Supplementary file 6. Epigenome-wide association study results and annotations for 27996 CpG probes,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
Differentially methylated CpGs (DMCs) selected at Bonferroni p = 0.05 (unadjusted p = 1.8E-0.06),,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
Regression model: lm(CpG ~ age + diet + strain median lifespan + final body weight + PC1),,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
,,Association with chronological age,,,,,,Association with strain median lifespan,,,,,,Association with strain diet,,,,,,Association with strain final body weight,,,,,,,Probe annotations,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
Index,CGid,age.estimate,age.stEr,age.tval,unadjusted.age.p,AgeEff,Age-DMC,ls.estimate,ls.stEr,ls.tval,ls.p,lsEff,LS-DMC,diet.estimate,diet.stEr,diet.tval,diet.p,dietEff,diet-DMC,minusLog10diet.p,bwF.estimate,bwF.stEr,bwF.tval,bwF.p,bwFEff,BW-DMC,Mean methylation,SYMBOL,GeneRegionID,seqnames,probeStart,probeEnd,CGstart,CGend,width,strand,seq,annotation,geneChr,geneStart,geneEnd,geneLength,geneStrand,transcriptId,distanceToTSS,flank_txIds,flank_geneIds,flank_gene_distances,genic,Intergenic,Promoter,fiveUTR,threeUTR,Exon,Intron,downstream,distal_intergenic,main_Categories,CpG_number_on_geneRegion,CpGs_number_on_gene,ENTREZID,ENSEMBL,conservationInHuman,CpGislandseqnames,CpGislandstart,CpGislandend,CpGislandwidth,CpGislandstrand,CpGislandlen,CpGislandcount,CpGislandgc,CpGislandoe,CpGislandden,CpGislandpvalue,CpGisland,CG,Liver_P90_U,Liver_P90_ChromHMM
26629,cg18711590,0.0000386,0.00000901,4.280476953,0.0000249,gain,ns,-0.000116932,0.0000153,-7.63807722,2.76E-13,neg,yes,0.00726382,0.004485044,1.61956503,0.106342566,pos,ns,0.973292865,-0.001089869,0.00015424,-7.066045082,1.06E-11,neg,yes,0.760627112,Dennd5b,Dennd5b_Exon,6,149044508,149044557,149044508,149044509,50,+,CGGTTGGTCAGCCAGGATTCCATGTCCTGGGCAGTCTGAATGACAAATGC,"Exon (Dennd5b-201/Dennd5b, exon 5 of 21)",6,148988071,149101680,113610,2,Dennd5b-201,57123,Dennd5b-201;Dennd5b-205;Dennd5b-207;Gm15781-201,Dennd5b;Dennd5b;Dennd5b;Gm15781,0;0;-1635;3528,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,320560,ENSMUSG00000030313,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27070,cg25575366,0.00000784,0.000014,0.559156796,0.576458436,gain,ns,0.000170696,0.0000238,7.165240486,5.70E-12,pos,yes,0.021599854,0.006979263,3.094861718,0.002148641,pos,ns,2.667836191,0.0000581,0.000240016,0.242221479,0.808768718,pos,ns,0.435168755,Ctnnbl1,Ctnnbl1_Intergenic_upstream,2,157664124,157664173,157664172,157664173,50,+,AACACTCATTTTAAACACAGGCAACTGAATTCCTGCAGACAGGCGCCACG,Distal Intergenic,2,157737401,157891614,154214,1,Ctnnbl1-201,-73228,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,8,66642,ENSMUSG00000027649,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16763,cg09498415,0.0000609,0.0000087,6.99517903,1.64E-11,gain,yes,-0.000103779,0.0000148,-7.01757891,1.43E-11,neg,yes,-0.000856762,0.0043325,-0.197752288,0.843368484,neg,ns,0.073982632,-0.000169578,0.000148994,-1.138152219,0.255935768,neg,ns,0.619983198,Syn3,Syn3_Intron,10,86457360,86457409,86457408,86457409,50,-,ACTGTGTGCACATTGTCTCCCTGATAAAAGGGGCCGGGCCTGGGAAAACG,"Intron (Syn3-201/Syn3, intron 2 of 13)",10,86055125,86498856,443732,2,Syn3-201,41447,Syn3-201;Syn3-206;Syn3-202;Syn3-203;Syn3-204,Syn3;Syn3;Syn3;Syn3;Syn3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,27204,ENSMUSG00000059602,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19993,cg18455914,0.00000579,0.0000111,0.521032073,0.602716408,gain,ns,0.000131203,0.0000189,6.945790892,2.22E-11,pos,yes,0.028659231,0.005534009,5.178746789,0.000000403,pos,ns,6.394933051,-0.000560651,0.000190314,-2.945925507,0.003463854,neg,ns,0.218755753,Nhsl2,Nhsl2_fiveUTR,X,102005054,102005103,102005102,102005103,50,-,GGCTGCCAGTCCAGAGCAGAATGATGGGCAACTCTCACCACAAGCAACCG,5' UTR,20,101849385,102076276,226892,1,Nhsl2-202,155669,Nhsl2-202;Nhsl2-201;Nhsl2-207;Nhsl2-206,Nhsl2;Nhsl2;Nhsl2;Nhsl2,0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,7,100042480,ENSMUSG00000079481,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
14838,cg19929340,0.0000274,0.000012,2.280405361,0.023262262,gain,ns,0.000140171,0.0000204,6.87870997,3.34E-11,pos,yes,0.007779826,0.00596991,1.303172914,0.193482818,pos,ns,0.713357595,0.000281183,0.000205305,1.369589215,0.171806444,pos,ns,0.491436584,Sez6,Sez6_Promoter,11,77930437,77930486,77930485,77930486,50,-,AGCCCTGGCATTTATTGAGCGCAAAGTAATAATTTATTATCCTTTGTACG,Promoter (<=1kb),11,77930800,77979048,48249,1,Sez6-202,-363,Sez6-202;Sez6-207;Sez6-205;Sez6-201;Sez6-209,Sez6;Sez6;Sez6;Sez6;Sez6,0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,9,20370,ENSMUSG00000000632,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
26920,cg21566778,-0.000015,0.0000925,-0.162391313,0.87110351,loss,ns,0.001078695,0.000157146,6.864287575,3.65E-11,pos,yes,0.16955193,0.046038455,3.682832755,0.000272056,pos,ns,3.565341894,-0.002402388,0.001583259,-1.517369184,0.13019259,neg,ns,0.30862721,Rpl5-ps2,Rpl5-ps2_Intergenic_downstream,2,154708129,154708178,154708129,154708130,50,+,CGGGCCAATTAAGAAGGCAAATGTTTTCAAACAGGAGGATTTATTGGCAT,Distal Intergenic,2,154703809,154704699,891,1,Rpl5-ps2-201,4320,Rpl5-ps2-201,Rpl5-ps2,4320,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,668936,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11393,cg13225177,0.0000182,0.0000148,1.230436243,0.219466627,gain,ns,0.000171914,0.0000251,6.837766923,4.29E-11,pos,yes,0.034289644,0.007365714,4.655304741,0.0000048,pos,ns,5.318494381,-0.000621937,0.000253306,-2.455275719,0.014626522,neg,ns,0.319111432,Zic3,Zic3_Intergenic_upstream,X,57918904,57918953,57918904,57918905,50,-,CGAGTAATTGATTTAATGAAGTTCATATGAAACTCCTGAGATTGGCCAAG,Distal Intergenic,20,58022700,58031448,8749,1,Zic3-204,-103796,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,17,22773,ENSMUSG00000067860,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
21076,cg14456595,-0.0000155,0.00000495,-3.129889885,0.001915174,loss,ns,0.0000571,0.00000842,6.780071386,6.08E-11,pos,yes,0.001426396,0.0024658,0.57847187,0.563365597,pos,ns,0.249209677,0.000138412,0.0000848,1.632239746,0.103644322,pos,ns,0.906050406,Gm42915,Gm42915_Intergenic_downstream,5,106350215,106350264,106350263,106350264,50,-,TGATGAAACAGACCAGAAATGTATAATGAGGAACATTTAACAAGCTCCCG,Distal Intergenic,5,106355362,106355684,323,2,Gm42915-201,5469,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,4,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22170,cg22237674,0.0000886,0.0000358,2.471294172,0.013999687,gain,ns,-0.000409719,0.0000609,-6.730425757,8.19E-11,neg,yes,-0.007437463,0.017834513,-0.417026433,0.67694771,neg,ns,0.169444877,-0.001268552,0.000613327,-2.068311033,0.039439796,neg,ns,0.789076096,Eif5,Eif5_fiveUTR,12,111539481,111539530,111539481,111539482,50,-,CGAAAATTTTTTCATGTCAGAGACCGAGAACTCTTGCAGTCGTTTATGTC,5' UTR,12,111538016,111546752,8737,1,Eif5-202,1465,Eif5-202;Eif5-214;Eif5-209;Eif5-204;Eif5-212;Eif5-213;Eif5-207;Eif5-210;Eif5-201;Eif5-203;Eif5-208;Eif5-211;Eif5-215;Eif5-217;Eif5-216;Eif5-205;Eif5-206,Eif5;Eif5;Eif5;Eif5;Eif5;Eif5;Eif5;Eif5;Eif5;Eif5;Eif5;Eif5;Eif5;Eif5;Eif5;Eif5;Eif5,0;0;1265;0;0;0;0;0;0;0;0;0;0;0;0;-2695;-3301,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,3,217869,ENSMUSG00000021282,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10793,cg21389633,0.000161577,0.0000115,14.09515403,3.32E-35,gain,yes,-0.000130626,0.0000195,-6.707498448,9.39E-11,neg,yes,-0.007818264,0.005705388,-1.370329933,0.171575439,neg,ns,0.765544881,-0.000764847,0.000196208,-3.898146585,0.000118837,neg,ns,0.731179152,Grk6,Grk6_Exon,13,55451374,55451423,55451374,55451375,50,+,CGACAGCATCTACTTCAACCGTTTCCTGCAGTGGAAGTGGCTGGAAAGGT,"Exon (Grk6-205/Grk6, exon 6 of 16)",13,55445072,55460922,15851,1,Grk6-205,6302,Grk6-205;Grk6-201;Grk6-206;Grk6-207;Grk6-202;Grk6-203,Grk6;Grk6;Grk6;Grk6;Grk6;Grk6,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,26385,ENSMUSG00000074886,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22817,cg00915901,0.00000901,0.0000219,0.412334112,0.680379546,gain,ns,0.000248425,0.0000371,6.689619634,1.05E-10,pos,yes,0.039296657,0.010879555,3.611972744,0.000354345,pos,ns,3.45057332,-0.00023041,0.000374147,-0.615828369,0.538459683,neg,ns,0.700413372,Faah,Faah_Intron,4,115972817,115972866,115972865,115972866,50,+,ATTGAAAATGATAGAGAGCAGATTGGAAATGGCTTCGCCCGCCCGACCCG,"Intron (Faah-202/Faah, intron 13 of 14)",4,115967145,116017675,50531,2,Faah-202,44809,Faah-202,Faah,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,20,14073,ENSMUSG00000034171,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
276,cg19993195,-0.00000372,0.0000197,-0.188741672,0.850418791,loss,ns,0.00022317,0.0000335,6.668027848,1.19E-10,pos,yes,0.023898785,0.009805191,2.437360405,0.015356926,pos,ns,1.813695713,0.000167786,0.0003372,0.497585447,0.619129022,pos,ns,0.584521719,Npas4,Npas4_threeUTR,19,4985018,4985067,4985018,4985019,50,+,CGTCTTGATGACAATATGCCATACTTGACGACGTTAAGTCACAGACTTAT,3' UTR,19,4984355,4989971,5617,2,Npas4-202,4904,Npas4-202;Npas4-201;Npas4-203,Npas4;Npas4;Npas4,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,14,16,225872,ENSMUSG00000045903,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
21083,cg15868957,0.000004,0.00000829,0.482856096,0.629538725,gain,ns,0.0000933,0.0000141,6.623908567,1.55E-10,pos,yes,0.015398759,0.004125749,3.732354609,0.000225624,pos,ns,3.646614575,-0.0000826,0.000141884,-0.581887622,0.561065287,neg,ns,0.918397905,Gm42915,Gm42915_Intergenic_upstream,5,106386755,106386804,106386755,106386756,50,+,CGGTGATTTTGTGACATGAAACATTGAATGCTCTTTTTTGACACACTATT,Distal Intergenic,5,106355362,106355684,323,2,Gm42915-201,-31071,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,4,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25207,cg15523513,-0.0000183,0.0000127,-1.439563792,0.150999863,loss,ns,0.00014271,0.0000216,6.610443938,1.67E-10,pos,yes,0.025865575,0.006324732,4.08959196,0.0000551,pos,ns,4.258626821,-0.000513309,0.000217507,-2.359965079,0.018896012,neg,ns,0.21329473,Pcdh19,Pcdh19_Promoter,X,133691530,133691579,133691530,133691531,50,+,CGGCCATTAACAATCCCCCAGGTAACGAGAAATGGAAGAATTACTCAGGT,Promoter (2-3kb),20,133582860,133688987,106128,2,Pcdh19-202,-2543,Pcdh19-202;Pcdh19-203,Pcdh19;Pcdh19,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,8,279653,ENSMUSG00000051323,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
27069,cg23795407,0.0000493,0.000015,3.294848995,0.001098853,gain,ns,0.000163562,0.0000254,6.428137338,4.87E-10,pos,yes,0.030205739,0.00745444,4.052046854,0.0000642,pos,ns,4.192194087,0.00000212,0.000256358,0.008281135,0.993398013,pos,ns,0.297276438,Ctnnbl1,Ctnnbl1_Intergenic_upstream,2,157664119,157664168,157664167,157664168,50,+,ATGTTAACACTCATTTTAAACACAGGCAACTGAATTCCTGCAGACAGGCG,Distal Intergenic,2,157737401,157891614,154214,1,Ctnnbl1-201,-73233,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,8,66642,ENSMUSG00000027649,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24197,cg12232590,0.0000364,0.0000208,1.748442547,0.081377291,gain,ns,-0.000224385,0.0000354,-6.337862709,8.20E-10,neg,yes,0.023104912,0.010372145,2.227592438,0.02662525,pos,ns,1.574706309,-0.001570012,0.000356697,-4.401526933,0.0000148,neg,ns,0.659972778,Pabpc4,Pabpc4_Intron,4,123295693,123295742,123295693,123295694,50,-,CGTGGCCAGTTGGACATCTGCCGCCAACACTGATGTGCATTTGCTGGTCT,"Intron (Pabpc4-204/Pabpc4, intron 10 of 13)",4,123282825,123298925,16101,1,Pabpc4-204,12868,Pabpc4-204;Pabpc4-203;Pabpc4-208;Pabpc4-202;Pabpc4-201;Pabpc4-205;Pabpc4-206,Pabpc4;Pabpc4;Pabpc4;Pabpc4;Pabpc4;Pabpc4;Pabpc4,0;0;0;0;0;0;-1438,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,5,230721,ENSMUSG00000011257,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1691,cg03288037,0.0000675,0.0000144,4.687672761,0.00000415,gain,ns,-0.000153908,0.0000244,-6.294968653,1.05E-09,neg,yes,0.036386357,0.007162816,5.079895294,0.000000653,pos,ns,6.184779228,-0.000741768,0.000246329,-3.011295789,0.002815338,neg,ns,0.807313977,Tle4,Tle4_Intron,19,14590347,14590396,14590395,14590396,50,+,GACAGCATTTTCTCCAGCAGATGAAGTAGATGCCGATTGATTTGCTGTCG,"Intron (Tle4-201/Tle4, intron 4 of 19)",19,14448150,14598051,149902,2,Tle4-201,7655,Tle4-201;Tle4-202;Tle4-203,Tle4;Tle4;Tle4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,29,21888,ENSMUSG00000024642,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27054,cg25820606,0.0000135,0.00000699,1.931284025,0.054359382,gain,ns,-0.0000748,0.0000119,-6.294386435,1.05E-09,neg,yes,-0.011184534,0.003479859,-3.214076864,0.001446486,neg,ns,2.839685764,0.000223639,0.000119672,1.868766528,0.062598236,pos,ns,0.935735434,Rpn2,Rpn2_Exon,2,157310243,157310292,157310291,157310292,50,+,GATCTTTCCACCGTGGATAAGGATCAGAGCATTGCACCCAAAACTACCCG,"Exon (Rpn2-202/Rpn2, exon 10 of 17)",2,157279059,157326319,47261,1,Rpn2-202,31184,Rpn2-202;Rpn2-201;Rpn2-206;Rpn2-205;Rpn2-203,Rpn2;Rpn2;Rpn2;Rpn2;Rpn2,0;0;0;0;-4259,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,20014,ENSMUSG00000027642,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23780,cg12285577,0.000123485,0.0000101,12.26105103,1.91E-28,gain,yes,-0.000107644,0.0000171,-6.291385464,1.07E-09,neg,yes,0.006994482,0.005012595,1.395381337,0.163899633,pos,ns,0.785422019,-0.00072866,0.000172383,-4.226987967,0.0000312,neg,ns,0.790175257,Vps39,Vps39_Exon,2,120338468,120338517,120338468,120338469,50,+,CGAGCTGCAGAGCCAATTCAAACTGCTTGTCCTGGAGAAGTTGTTGGATT,"Exon (Vps39-201/Vps39, exon 10 of 25)",2,120316461,120353125,36665,2,Vps39-201,14608,Vps39-201;Vps39-202;Vps39-204;Vps39-209;Vps39-207;Vps39-210,Vps39;Vps39;Vps39;Vps39;Vps39;Vps39,0;0;0;0;0;14604,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,269338,ENSMUSG00000027291,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11328,cg20552236,0.0000189,0.00000685,2.756156185,0.0061948,gain,ns,-0.0000731,0.0000116,-6.279366555,1.15E-09,neg,yes,0.011705747,0.003409228,3.433547227,0.00067676,pos,ns,3.169565451,-0.001083425,0.000117243,-9.240846473,4.03E-18,neg,yes,0.803740065,Csk,Csk_Exon,9,57630957,57631006,57631005,57631006,50,-,TGCCGTGGAAGTTGTACTTGGCAATACATTCTGTACCGGATGGCCAGGCG,Promoter (<=1kb),9,57630477,57630970,494,2,Csk-205,0,Csk-201;Csk-209;Csk-204;Csk-202;Csk-208;Csk-206;Csk-207;Csk-205,Csk;Csk;Csk;Csk;Csk;Csk;Csk;Csk,0;0;0;-2196;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,12988,ENSMUSG00000032312,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
278,cg08221382,0.0000034,0.0000176,0.193501294,0.846693116,gain,ns,0.000187225,0.0000299,6.263463834,1.26E-09,pos,yes,0.033334774,0.008757221,3.806547113,0.000169821,pos,ns,3.770009102,-0.000439793,0.00030116,-1.460329792,0.145212162,neg,ns,0.159592564,Npas4,Npas4_threeUTR,19,4985026,4985075,4985074,4985075,50,+,TGACAATATGCCATACTTGACGACGTTAAGTCACAGACTTATTCAAAACG,3' UTR,19,4984355,4989971,5617,2,Npas4-202,4896,Npas4-202;Npas4-201;Npas4-203,Npas4;Npas4;Npas4,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,14,16,225872,ENSMUSG00000045903,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
13784,cg26303013,0.0000128,0.00000416,3.073023731,0.002307179,gain,ns,-0.000044,0.00000707,-6.226987743,1.54E-09,neg,yes,0.002441986,0.002071157,1.179044331,0.239284652,pos,ns,0.621085157,-0.0000356,0.0000712,-0.500060833,0.617387021,neg,ns,0.83291207,Rfx7,Rfx7_Exon,9,72616723,72616772,72616771,72616772,50,+,CACTCAGCACATGCAGTCTGTGAAACAGGCACCAAAGACTCCCCAGAACG,"Exon (Rfx7-202/Rfx7, exon 9 of 9)",9,72532240,72622829,90590,1,Rfx7-202,84483,Rfx7-202;Rfx7-201;Rfx7-203;Rfx7-205;Rfx7-204,Rfx7;Rfx7;Rfx7;Rfx7;Rfx7,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,8,319758,ENSMUSG00000037674,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24626,cg12713245,-0.00000632,0.0000115,-0.550002465,0.582713729,loss,ns,-0.000120959,0.0000195,-6.193108146,1.87E-09,neg,yes,-0.000444035,0.005721995,-0.077601515,0.938195099,neg,ns,0.02770684,-0.001562248,0.000196779,-7.939102741,3.77E-14,neg,yes,0.757382862,Mbd6,Mbd6_threeUTR,10,127282831,127282880,127282879,127282880,50,-,TGCTATGGGGCCAGTTTCCTCCTCTTGTTTTTGGCAGGACGGCCAGGGCG,Promoter (<=1kb),10,127281956,127283668,1713,2,Mbd6-204,788,Dctn2-201;Dctn2-205;Dctn2-203;Dctn2-204;Mbd6-204;Mbd6-203;Mbd6-201;Mbd6-202;Mbd6-205;Mbd6-207;Mbd6-206,Dctn2;Dctn2;Dctn2;Dctn2;Mbd6;Mbd6;Mbd6;Mbd6;Mbd6;Mbd6;Mbd6,0;5891;5550;5425;0;0;0;0;0;1491;0,TRUE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,6,110962,ENSMUSG00000025409,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26863,cg18463965,-0.000144759,0.000033,-4.381566199,0.0000162,loss,ns,0.000347233,0.0000561,6.186507494,1.94E-09,pos,yes,0.116543776,0.01644345,7.087549969,9.25E-12,pos,yes,11.03394683,-0.002517044,0.000565489,-4.45109294,0.0000119,neg,ns,0.488015044,Nol4l,Nol4l_Intron,2,153494573,153494622,153494573,153494574,50,+,CGGAAAGGGAGATGTTCGTACCTTCTGACATACACTGAGTAATGTGCAAA,"Intron (Nol4l-201/Nol4l, intron 1 of 10)",2,153407462,153529971,122510,2,Nol4l-201,35349,4930404H24Rik-201;Nol4l-201;Nol4l-203,4930404H24Rik;Nol4l;Nol4l,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,14,329540,ENSMUSG00000061411,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
485,cg22868841,-0.0000231,0.0000134,-1.715849967,0.087188604,loss,ns,0.000140737,0.0000228,6.162706244,2.22E-09,pos,yes,0.006847688,0.006690441,1.023503228,0.306867994,pos,ns,0.513048405,0.000382065,0.000230084,1.660549146,0.097815099,pos,ns,0.794643691,Gm8652,Gm8652_Intron,6,6459559,6459608,6459559,6459560,50,+,CGCTCACTTTAAGCACAGGCAGCTGGAGATTGTCATATTCTGAAAATGAC,"Intron (Gm20617-202/Gm20617-202, intron 1 of 1)",6,6351304,6352267,964,2,Gm8652-201,-107292,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,667471,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
841,cg16754150,-0.00000736,0.000011,-0.670059235,0.503318848,loss,ns,0.000114285,0.0000187,6.121871624,2.79E-09,pos,yes,0.022351409,0.005469191,4.086784903,0.0000558,pos,ns,4.25364295,-0.0000947,0.000188085,-0.503373929,0.61505888,neg,ns,0.795917953,Nxph1,Nxph1_Intron,6,8955146,8955195,8955194,8955195,50,-,AGATTTTCTGCAGACTACAGAAATTGACAGCATTGTCCGGGTAATAACCG,"Intron (Nxph1-202/Nxph1, intron 2 of 2)",6,8948614,9249032,300419,1,Nxph1-202,6532,Nxph1-203;Nxph1-202;Nxph1-201,Nxph1;Nxph1;Nxph1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,12,18231,ENSMUSG00000046178,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
10770,cg22979709,-0.0000473,0.0000061,-7.766129979,1.19E-13,loss,yes,-0.0000634,0.0000104,-6.116321903,2.88E-09,neg,yes,0.008569616,0.003034451,2.824107585,0.005048314,pos,ns,2.296853649,-0.000352725,0.000104355,-3.380067854,0.000817384,neg,ns,0.790379541,Nsd1,Nsd1_Exon,13,55312262,55312311,55312310,55312311,50,+,ACTGAGCATGACCCCTGTGGGCCCAATCCTCTGGAACCTGGGGAGATCCG,"Exon (Nsd1-207/Nsd1, exon 21 of 21)",13,55209782,55315755,105974,1,Nsd1-207,102480,Nsd1-207;Nsd1-201,Nsd1;Nsd1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,7,18193,ENSMUSG00000021488,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27037,cg03584734,-4.88E-09,0.0000109,-0.000446378,0.999644129,loss,ns,-0.000113228,0.0000186,-6.100937805,3.14E-09,neg,yes,-0.027415779,0.005437178,-5.042280549,0.000000784,neg,ns,6.105643008,0.000626649,0.000186984,3.3513495,0.000903709,pos,ns,0.749250218,Dlgap4,Dlgap4_fiveUTR,2,156748373,156748422,156748373,156748374,50,-,CGCTACCAAATTCCAGTCCATCGGGGTTCAGGTAGAGGACGACTGGCGGT,5' UTR,2,156613705,156764361,150657,1,Dlgap4-205,134668,Dlgap4-205;Dlgap4-212;Dlgap4-206;Dlgap4-202;Dlgap4-210;Dlgap4-209;Dlgap4-204;Dlgap4-208;Dlgap4-211;Dlgap4-214;Dlgap4-213;Dlgap4-201;Dlgap4-203,Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,10,17,228836,ENSMUSG00000061689,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14837,cg17977273,0.00000868,0.00000825,1.051864316,0.293681035,gain,ns,0.0000852,0.000014,6.078524015,3.56E-09,pos,yes,0.003591949,0.004105998,0.874805237,0.382357135,pos,ns,0.417530801,0.000183938,0.000141205,1.30262958,0.193668111,pos,ns,0.901692167,Sez6,Sez6_Promoter,11,77930408,77930457,77930456,77930457,50,+,CACAGTTTGCTGCTGATGCAGCTGCCTGGAGCCCTGGCATTTATTGAGCG,Promoter (<=1kb),11,77930800,77979048,48249,1,Sez6-202,-343,Sez6-202;Sez6-207;Sez6-205;Sez6-201;Sez6-209,Sez6;Sez6;Sez6;Sez6;Sez6,0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,9,20370,ENSMUSG00000000632,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
22189,cg04412186,0.0000416,0.0000172,2.418469029,0.016161894,gain,ns,0.000177484,0.0000293,6.067167716,3.79E-09,pos,yes,0.032908425,0.008570207,3.839863362,0.00014926,pos,ns,3.826055372,-0.000145752,0.000294729,-0.494530868,0.621281585,neg,ns,0.242579912,Hdx,Hdx_Promoter,X,111697088,111697137,111697088,111697089,50,+,CGTGTCCGATCATCAATTCTCATCATGATCGTGACGTCACAAAAGACAGC,Promoter (<=1kb),20,111569933,111697079,127147,2,Hdx-201,-9,Hdx-202;Hdx-201,Hdx;Hdx,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,8,245596,ENSMUSG00000034551,conserved gene but different region,X,111697031,111697165,135,*,135,10,0.533333333,1.062155783,0.074074074,0.00000108,CpGisland,TRUE,NA,NRS
9372,cg14084430,-0.00000678,0.00000859,-0.789473829,0.430438531,loss,ns,0.000088,0.0000146,6.030782454,4.64E-09,pos,yes,0.013832081,0.004277326,3.233814915,0.0013532,pos,ns,2.868638,-0.000119439,0.000147097,-0.811977734,0.417427459,neg,ns,0.532109001,Elf4,Elf4_Intron,X,48450036,48450085,48450084,48450085,50,+,AATTGAAACTCAGCAGCCCCTATGAGGTCAGAACCCTCATAAGCACCCCG,"Intron (Elf4-202/Elf4, intron 1 of 8)",20,48411046,48454169,43124,2,Elf4-202,4084,Elf4-202;Elf4-201;Elf4-203,Elf4;Elf4;Elf4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,2,56501,ENSMUSG00000031103,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19682,cg08799387,-0.0000152,0.0000153,-0.994391437,0.320807872,loss,ns,-0.00015576,0.0000259,-6.003034928,5.41E-09,neg,yes,0.042281985,0.007601539,5.562292707,5.76E-08,pos,ns,7.239828412,-0.002174861,0.000261416,-8.319530697,2.84E-15,neg,yes,0.821352267,Dazap2,Dazap2_Exon,15,100619443,100619492,100619443,100619444,50,+,CGGAAGGGGAACTTCTTCATGGGTGGTTCAGATGGTGGCTACACCATCTG,"Exon (Dazap2-201/Dazap2, exon 4 of 4)",15,100615349,100620761,5413,1,Dazap2-201,4094,Dazap2-201;Dazap2-204;Dazap2-202;Dazap2-203;Smagp-201;Smagp-205;Smagp-202;Smagp-204;Smagp-203;Smagp-206,Dazap2;Dazap2;Dazap2;Dazap2;Smagp;Smagp;Smagp;Smagp;Smagp;Smagp,0;3509;0;3111;17363;17199;17448;17372;16008;16067,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,23994,ENSMUSG00000000346,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3260,cg13721678,0.000505472,0.0000198,25.54895787,2.86E-78,gain,yes,-0.000201265,0.0000336,-5.988034636,5.87E-09,neg,yes,0.013120208,0.009846919,1.332417599,0.183701599,pos,ns,0.735887063,0.000510987,0.000338635,1.508960768,0.132327304,pos,ns,0.507528365,Cadps2,Cadps2_Exon,6,23410880,23410929,23410880,23410881,50,+,CGGGCACAGTACTCATCTAACACAAAGACTTGGCCAGGGCTAAACCATCC,"Exon (Cadps2-213/Cadps2, exon 14 of 30)",6,23262773,23839137,576365,2,Cadps2-213,428208,Cadps2-213;Cadps2-205;Cadps2-212;Cadps2-201;Cadps2-209;Cadps2-206;Cadps2-207;Cadps2-202;Cadps2-204,Cadps2;Cadps2;Cadps2;Cadps2;Cadps2;Cadps2;Cadps2;Cadps2;Cadps2,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,15,320405,ENSMUSG00000017978,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22818,cg05950850,0.0000246,0.0000294,0.836967145,0.403255779,gain,ns,0.000297481,0.0000499,5.963056533,6.74E-09,pos,yes,0.039441674,0.01461529,2.698658226,0.007343578,pos,ns,2.134092311,0.0000428,0.000502619,0.085215393,0.932145161,pos,ns,0.489469205,Faah,Faah_Intron,4,115972831,115972880,115972879,115972880,50,+,AGAGCAGATTGGAAATGGCTTCGCCCGCCCGACCCGCAGAGATGGAAACG,"Intron (Faah-202/Faah, intron 13 of 14)",4,115967145,116017675,50531,2,Faah-202,44795,Faah-202,Faah,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,20,14073,ENSMUSG00000034171,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
14429,cg18230281,0.000055,0.0000112,4.917674308,0.00000142,gain,yes,0.000113199,0.000019,5.952549863,7.14E-09,pos,yes,0.033171309,0.005571327,5.953933052,7.09E-09,pos,ns,8.149636371,-0.00045043,0.000191597,-2.35091707,0.019353307,neg,ns,0.188897543,Rab39b,Rab39b_fiveUTR,X,75578173,75578222,75578221,75578222,50,-,GGATGCTGCGCTCGCAAAGGTGATGAAATGGCAGCAGCATCAGCACCACG,Promoter (<=1kb),20,75572046,75578231,6186,2,Rab39b-201,9,Rab39b-201,Rab39b,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,3,67790,ENSMUSG00000031202,conserved gene but different region,X,75578153,75578359,207,*,207,12,0.497584541,0.943768997,0.057971015,0.00000084,CpGisland,TRUE,U15,NS
15679,cg06434807,0.00000583,0.0000123,0.472007819,0.637253278,gain,ns,0.000124794,0.000021,5.947932876,7.32E-09,pos,yes,0.011919981,0.006146719,1.939243023,0.053378882,pos,ns,1.272630526,0.000117376,0.000211385,0.555271568,0.579109383,pos,ns,0.508879282,Gm14741,Gm14741_Intergenic_upstream,X,82814731,82814780,82814731,82814732,50,-,CGACTGACGTATCAGATAGTCAGAGTGGTTACCACACCGACGTTGTAGCA,Distal Intergenic,20,82757430,82758438,1009,2,Gm14741-201,-56342,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,11,100415954,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21469,cg12652554,0.00000804,0.00000812,0.99029661,0.322801484,gain,ns,0.000082,0.0000138,5.943697972,7.49E-09,pos,yes,0.010184481,0.004039835,2.521014357,0.0122031,pos,ns,1.913529822,-0.0000999,0.00013893,-0.719355538,0.472463815,neg,ns,0.800235369,Bcl11b,Bcl11b_Exon,12,107915498,107915547,107915546,107915547,50,-,AGGGCATCTGGCAGATGTCGCAGCGGTACACCTCCTTGCCGATCTGCCCG,"Exon (Bcl11b-201/Bcl11b, exon 4 of 4)",12,107910403,108003602,93200,2,Bcl11b-201,88055,Bcl11b-201;Bcl11b-202;Bcl11b-203,Bcl11b;Bcl11b;Bcl11b,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,11,39,58208,ENSMUSG00000048251,conserved gene and region,12,107915259,107916962,1704,*,1704,150,0.66314554,0.800892387,0.088028169,2.06E-104,CpGisland,TRUE,U15,NS
14283,cg03724931,0.0000298,0.0000128,2.320293843,0.020973917,gain,ns,-0.000129603,0.0000218,-5.943337869,7.51E-09,neg,yes,0.004179577,0.00638853,0.654231379,0.513447799,pos,ns,0.289503704,-0.000323909,0.000219701,-1.474319283,0.141410426,neg,ns,0.570983868,Smg6,Smg6_Intron,11,75054288,75054337,75054288,75054289,50,+,CGATCATTTCCTCACTTGTTTAAATAGTGCAGCTTGTGTTGGCAGTGCTC,"Intron (Smg6-201/Smg6, intron 13 of 18)",11,74925823,75164448,238626,1,Smg6-201,128465,Smg6-201;Smg6-202;Smg6-204,Smg6;Smg6;Smg6,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,34,103677,ENSMUSG00000038290,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
16475,cg25117614,0.0000361,0.00000982,3.678255343,0.000276775,gain,ns,-0.0000988,0.0000167,-5.921797315,8.45E-09,neg,yes,-0.007633275,0.004889331,-1.561210521,0.119494344,neg,ns,0.922652649,-0.0000244,0.000168144,-0.144868663,0.884908709,neg,ns,0.638908369,Cntln,Cntln_Intron,4,85118927,85118976,85118975,85118976,50,+,TATTACTGTGTCTTCCCGCATTCTCTACAATATTTTCTACTGAGACCTCG,"Intron (Cntln-201/Cntln, intron 25 of 25)",4,84884309,85131921,247613,1,Cntln-201,234618,Cntln-201;Cntln-204;Cntln-203,Cntln;Cntln;Cntln,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,25,338349,ENSMUSG00000038070,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21466,cg13795805,0.00000151,0.00000404,0.374407769,0.70835694,gain,ns,0.0000405,0.00000687,5.895278971,9.76E-09,pos,yes,0.005112631,0.002012024,2.541038254,0.01153959,pos,ns,1.937809603,-0.00000985,0.0000692,-0.142407709,0.886850483,neg,ns,0.960772379,Bcl11b,Bcl11b_Exon,12,107915468,107915517,107915516,107915517,50,+,TGTGTTTCTCCAGGGTGCTGTAGACGCTGAAGGGCATCTGGCAGATGTCG,"Exon (Bcl11b-201/Bcl11b, exon 4 of 4)",12,107910403,108003602,93200,2,Bcl11b-201,88085,Bcl11b-201;Bcl11b-202;Bcl11b-203,Bcl11b;Bcl11b;Bcl11b,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,11,39,58208,ENSMUSG00000048251,conserved gene and region,12,107915259,107916962,1704,*,1704,150,0.66314554,0.800892387,0.088028169,2.06E-104,CpGisland,TRUE,U15,NS
26751,cg07143052,0.0000324,0.0000162,1.998635822,0.046520735,gain,ns,0.000162531,0.0000276,5.894706662,9.79E-09,pos,yes,0.047823866,0.008077746,5.920446919,8.51E-09,pos,ns,8.070031111,-0.001174495,0.000277793,-4.227949068,0.0000311,neg,ns,0.356226296,Smc1a,Smc1a_Exon,X,152016594,152016643,152016594,152016595,50,+,CGGACCATTTCAGAGGTTCACCGCCATCATTGGACCCAATGGCTCTGGTG,Promoter (<=1kb),20,152016428,152036212,19785,1,Smc1a-206,166,Ribc1-201;Ribc1-202;Smc1a-206;Smc1a-201,Ribc1;Ribc1;Smc1a;Smc1a,-299;-324;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,24061,ENSMUSG00000041133,conserved gene but different region,X,152016189,152016683,495,*,495,40,0.56969697,0.996727913,0.080808081,7.75E-27,CpGisland,TRUE,U1,Pr-A
5678,cg17453502,-0.00000573,0.0000138,-0.414659125,0.678678257,loss,ns,-0.00013809,0.0000235,-5.87711897,1.08E-08,neg,yes,0.049067902,0.006883611,7.128221422,7.18E-12,pos,yes,11.14394955,-0.001069446,0.000236727,-4.517636248,0.0000089,neg,ns,0.802520691,Mapkap1,Mapkap1_Intron,2,34535261,34535310,34535261,34535262,50,+,CGGCTTTTGCCAGCTGACTGCGCCGTTTGATAACCAGCTCTCTGGATGCC,"Intron (Mapkap1-204/Mapkap1, intron 6 of 10)",2,34406862,34623475,216614,1,Mapkap1-204,128399,Mapkap1-204;Mapkap1-202;Mapkap1-201;Mapkap1-209;Mapkap1-203;Mapkap1-207,Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,59,227743,ENSMUSG00000038696,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4201,cg23479761,0.0000159,0.0000173,0.9219477,0.357272809,gain,ns,-0.000171936,0.0000293,-5.865750768,1.15E-08,neg,yes,0.027057558,0.008587378,3.150852247,0.001786893,pos,ns,2.747901473,-0.001668519,0.000295319,-5.649884523,3.64E-08,neg,yes,0.703034018,Tasor,Tasor_threeUTR,14,27480682,27480731,27480730,27480731,50,-,GATTTCCCAACATTAAACGTGAACACATTTCGCAGAAGCTTTTAGCATCG,3' UTR,14,27428834,27483555,54722,1,Tasor-201,51848,Ccdc66-202;Ccdc66-203;Ccdc66-201;Tasor-201;Tasor-204,Ccdc66;Ccdc66;Ccdc66;Tasor;Tasor,27729;3144;27714;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,3,218850,ENSMUSG00000040651,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22815,cg02266179,0.000014,0.0000174,0.802974598,0.422604621,gain,ns,0.00017289,0.0000296,5.837261389,1.34E-08,pos,yes,0.014425909,0.008677164,1.662514127,0.097420459,pos,ns,1.011349829,0.00035206,0.000298407,1.179799122,0.238984693,pos,ns,0.693478573,Faah,Faah_Intron,4,115972724,115972773,115972724,115972725,50,+,CGAGCTGGTGATGAATATGTGTCACTTTACACGGCGCACACTCGGGGGCC,"Intron (Faah-202/Faah, intron 13 of 14)",4,115967145,116017675,50531,2,Faah-202,44902,Faah-202,Faah,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,20,14073,ENSMUSG00000034171,mapped to different genes,4,115972623,115972781,159,*,159,18,0.666666667,1.042622951,0.113207547,4.61E-15,CpGisland,TRUE,U13,Hc-P
6094,cg03225697,0.0000335,0.000014,2.388649196,0.017508455,gain,ns,0.000138839,0.0000238,5.83499526,1.35E-08,pos,yes,0.012239247,0.00697088,1.755767841,0.080115632,pos,ns,1.096282736,-0.000332633,0.000239728,-1.387541943,0.166273169,neg,ns,0.187433763,Nrg2,Nrg2_threeUTR,18,36017680,36017729,36017728,36017729,50,-,CGAAGCTGTAAATCAGGATGTTACATATAAATAGTTTCCCTATAAAAACG,3' UTR,18,36017652,36197380,179729,2,Nrg2-203,179651,Nrg2-203;Nrg2-206;Nrg2-202;Nrg2-205;Psd2-201;Psd2-205;Psd2-206;Psd2-204;Psd2-203,Nrg2;Nrg2;Nrg2;Nrg2;Psd2;Psd2;Psd2;Psd2;Psd2,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,20,100042150,ENSMUSG00000060275,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
26440,cg04585931,0.000079,0.0000568,1.391808455,0.164978194,gain,ns,-0.000562397,0.0000964,-5.831770522,1.38E-08,neg,yes,-0.065198525,0.028252716,-2.307690566,0.021674672,neg,ns,1.664047456,0.001988808,0.000971609,2.046922657,0.041508578,pos,ns,0.831140327,Foxa2,Foxa2_Intron,2,148036970,148037019,148037018,148037019,50,-,CCTCCCATCCCACGTTGTTGGTTTTCTGTGTGTGGCTTTTGGTGTGAGCG,"Intron (9030622O22Rik-203/9030622O22Rik-203, intron 1 of 2)",2,148044240,148045464,1225,2,Foxa2-203,8494,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,25,15376,ENSMUSG00000037025,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
13153,cg11493626,0.0000224,0.00000503,4.445610652,0.0000122,gain,ns,-0.0000498,0.00000855,-5.826565164,1.42E-08,neg,yes,-0.00595343,0.002504192,-2.377385408,0.018042246,neg,ns,1.743709389,-0.000110835,0.0000861,-1.286997082,0.199055453,neg,ns,0.811013603,Ikzf2,Ikzf2_Exon,1,69577835,69577884,69577883,69577884,50,+,CACAGACGTCACATTTCAGTTTACCATTCGGAAGCCGGATTCCTCCCTCG,"Exon (Ikzf2-201/Ikzf2, exon 4 of 8)",1,69531214,69685821,154608,2,Ikzf2-201,107937,Ikzf2-201;Ikzf2-207;Ikzf2-202;Ikzf2-204;Ikzf2-208;Ikzf2-209;Ikzf2-206,Ikzf2;Ikzf2;Ikzf2;Ikzf2;Ikzf2;Ikzf2;Ikzf2,0;0;0;0;0;0;107416,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,14,22779,ENSMUSG00000025997,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18080,cg06080904,0.0000108,0.00000765,1.416020218,0.157773538,gain,ns,0.0000756,0.000013,5.822972183,1.44E-08,pos,yes,0.013193975,0.003805596,3.466993365,0.000600664,pos,ns,3.221368103,-0.000236631,0.000130874,-1.808077499,0.071563459,neg,ns,0.180280484,Pcyt1b,Pcyt1b_Exon,X,93675471,93675520,93675471,93675472,50,+,CGACTGGTAAGTAAAGACAAAGGATGGAAATGTATGCGTGGCTATGGCAT,"Exon (Pcyt1b-201/Pcyt1b, exon 1 of 8)",20,93654863,93749951,95089,1,Pcyt1b-202,20608,Pcyt1b-202;Pcyt1b-201,Pcyt1b;Pcyt1b,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,236899,ENSMUSG00000035246,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
26814,cg23754359,-0.0000105,0.00000831,-1.263650302,0.207305013,loss,ns,0.0000819,0.0000141,5.797867704,1.65E-08,pos,yes,0.008638987,0.004136059,2.088700283,0.037550193,pos,ns,1.425387832,-0.00022191,0.000142239,-1.56012222,0.119751269,neg,ns,0.619038064,Rem1,Rem1_Intergenic_downstream,2,152636851,152636900,152636851,152636852,50,-,CGGCAGCAGCCGGGAGAGTGGAAAAAATGATATCAAACCCGGAAAAATGC,Downstream (1-2kb),2,152632967,152635198,2232,1,Rem1-202,3933,Rem1-201;Rem1-202,Rem1;Rem1,9900;3884,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,2,2,19700,ENSMUSG00000000359,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
25724,cg02730271,-0.000014,0.00000741,-1.892835622,0.059311065,loss,ns,0.0000729,0.0000126,5.792447802,0.000000017,pos,yes,0.009400708,0.00368804,2.548971012,0.011285757,pos,ns,1.947469292,-0.0000827,0.000126831,-0.652199377,0.514755849,neg,ns,0.856587204,Lhx9,Lhx9_Exon,1,138828673,138828722,138828673,138828674,50,+,CGGGATGTTTGGCTGTAATGCCCCAAGATTTGTTCTCCCTGAAAAAAATC,"Exon (Lhx9-201/Lhx9, exon 5 of 5)",1,138825186,138842457,17272,2,Lhx9-201,13735,Lhx9-201;Lhx9-203;Lhx9-205;Lhx9-202;Lhx9-204;Lhx9-206;Lhx9-207,Lhx9;Lhx9;Lhx9;Lhx9;Lhx9;Lhx9;Lhx9,0;0;0;0;0;4937;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,12,16876,ENSMUSG00000019230,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11402,cg03789534,0.000130059,0.0000312,4.163315922,0.0000407,gain,ns,0.000306704,0.0000531,5.779082096,1.83E-08,pos,yes,0.064923893,0.015548114,4.175676556,0.0000387,pos,ns,4.412801549,-0.000677184,0.000534698,-1.266479222,0.206292346,neg,ns,0.406543033,Zic3,Zic3_Promoter,X,58019044,58019093,58019092,58019093,50,+,GCGCCGCACACTATAAGGAAATAGCGTTTCACGGCTTGCTTTATGGTGCG,Promoter (3-4kb),20,58022700,58031448,8749,1,Zic3-204,-3607,Zic3-204,Zic3,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,17,22773,ENSMUSG00000067860,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
15269,cg18536396,-0.00000121,0.0000112,-0.107309848,0.914612587,loss,ns,0.000110255,0.0000191,5.776875494,1.85E-08,pos,yes,0.015273523,0.005591446,2.731587281,0.006664159,pos,ns,2.176254651,-0.000462972,0.000192289,-2.407685313,0.016637909,neg,ns,0.1961653,Zfp36l1,Zfp36l1_threeUTR,12,80109166,80109215,80109166,80109167,50,+,CGGGTGCCCTCTGGCGCTGAAGAGGTAATGTAGTCACAGTGACAAAGTTA,3' UTR,12,80107754,80113013,5260,2,Zfp36l1-201,3798,Zfp36l1-201;Zfp36l1-202;Zfp36l1-204;Zfp36l1-203,Zfp36l1;Zfp36l1;Zfp36l1;Zfp36l1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,8,12192,ENSMUSG00000021127,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
1690,cg27370397,0.000110952,0.00000919,12.07754351,8.74E-28,gain,yes,-0.0000901,0.0000156,-5.772910914,1.89E-08,neg,yes,0.00643007,0.00457229,1.406312892,0.160632831,pos,ns,0.794165688,0.0000129,0.000157241,0.081971373,0.934722378,pos,ns,0.818602008,Tle4,Tle4_Intron,19,14590380,14590429,14590380,14590381,50,+,CGATTGATTTGCTGTCGAGCATGGTAAATTAATAGCAACAAATTGCTGAG,"Intron (Tle4-201/Tle4, intron 4 of 19)",19,14448150,14598051,149902,2,Tle4-201,7622,Tle4-201;Tle4-202;Tle4-203,Tle4;Tle4;Tle4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,29,21888,ENSMUSG00000024642,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25206,cg11012613,0.0000065,0.0000109,0.59832792,0.550058048,gain,ns,0.000106064,0.0000184,5.749377666,2.14E-08,pos,yes,0.026953875,0.0054046,4.98720954,0.00000102,pos,ns,5.99061214,-0.000567398,0.000185864,-3.052760596,0.002463844,neg,ns,0.177122442,Pcdh19,Pcdh19_Promoter,X,133691502,133691551,133691502,133691503,50,-,CGGGAGCAAAGAGTCTGAGAAGTAGTCTCGGCCATTAACAATCCCCCAGG,Promoter (2-3kb),20,133582860,133688987,106128,2,Pcdh19-202,-2564,Pcdh19-202;Pcdh19-203,Pcdh19;Pcdh19,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,8,279653,ENSMUSG00000051323,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
15008,cg12456170,-0.0000298,0.0000166,-1.792192794,0.074077143,loss,ns,0.000162293,0.0000282,5.745687898,2.19E-08,pos,yes,0.011400484,0.008275162,1.377675132,0.169297351,pos,ns,0.771349837,-0.0000664,0.000284582,-0.233432685,0.815579502,neg,ns,0.240314987,Pou4f2,Pou4f2_Promoter,8,78438858,78438907,78438906,78438907,50,-,GTGTAATCTGCTATGCCTCATCTGATTTGTATGCTTAATTCAGCTTGACG,Promoter (2-3kb),8,78433010,78436645,3636,2,Pou4f2-201,-2262,Pou4f2-201,Pou4f2,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,6,23,18997,ENSMUSG00000031688,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
14481,cg15628967,-0.00000675,0.0000033,-2.047785053,0.04142341,loss,ns,-0.0000321,0.0000056,-5.726645812,2.42E-08,neg,yes,0.004655706,0.001640294,2.838336265,0.00483415,pos,ns,2.31567988,-0.000219552,0.0000564,-3.892109683,0.000121692,neg,ns,0.945994909,Smarcb1,Smarcb1_Exon,10,75916768,75916817,75916768,75916769,50,+,CGCACCCTTAGTGTTAGGTTTTGTTTTTTTACCATGTGACGATGCAACTA,"Exon (Smarcb1-201/Smarcb1, exon 2 of 9)",10,75896769,75921617,24849,2,Smarcb1-201,4800,Smarcb1-201;Smarcb1-203;Smarcb1-205;Smarcb1-202;Smarcb1-204;Smarcb1-206,Smarcb1;Smarcb1;Smarcb1;Smarcb1;Smarcb1;Smarcb1,0;-2606;-196;0;0;-1604,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,20587,ENSMUSG00000000902,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17975,cg04527423,-0.00000767,0.00000752,-1.019701287,0.308665274,loss,ns,0.0000729,0.0000128,5.707523124,2.68E-08,pos,yes,0.009956706,0.003741836,2.660914764,0.008198665,pos,ns,2.086256877,-0.000285518,0.000128681,-2.218793793,0.027224728,neg,ns,0.124363144,Arx,Arx_Intergenic_upstream,X,93069784,93069833,93069784,93069785,50,+,CGATTTAAATTCTGCTTGCCTCATTCTTTGCATAGACAGCAACGGGCTGA,Distal Intergenic,20,93286445,93288382,1938,1,Arx-203,-216612,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,32,11878,ENSMUSG00000035277,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15938,cg25646471,-0.00000496,0.0000174,-0.284139591,0.7764931,loss,ns,0.000168436,0.0000296,5.683686691,3.04E-08,pos,yes,0.022994908,0.008682052,2.648556896,0.008497501,pos,ns,2.070708787,-0.0000139,0.000298575,-0.046465692,0.962968997,neg,ns,0.672207054,Dmd,Dmd_Exon,X,83928764,83928813,83928812,83928813,50,-,GCTAACTGCCCTGGGCCCTGTATTGGTTTTGCTCAATAGGAAATTGATCG,"Exon (Dmd-203/Dmd, exon 41 of 79)",20,82948903,85206141,2257239,1,Dmd-203,979861,Dmd-203;Dmd-215;Dmd-209,Dmd;Dmd;Dmd,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,20,28,13405,ENSMUSG00000045103,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5679,cg26263695,-0.0000362,0.0000101,-3.580469868,0.000397991,loss,ns,-0.0000973,0.0000172,-5.67183355,3.24E-08,neg,yes,0.030346997,0.005027077,6.036708654,4.49E-09,pos,ns,8.347847807,-0.000707189,0.000172881,-4.090618487,0.0000549,neg,ns,0.86260772,Mapkap1,Mapkap1_Intron,2,34535281,34535330,34535281,34535282,50,+,CGCCGTTTGATAACCAGCTCTCTGGATGCCCATCACTGGCCGCAGAGATA,"Intron (Mapkap1-204/Mapkap1, intron 6 of 10)",2,34406862,34623475,216614,1,Mapkap1-204,128419,Mapkap1-204;Mapkap1-202;Mapkap1-201;Mapkap1-209;Mapkap1-203;Mapkap1-207,Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,59,227743,ENSMUSG00000038696,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17996,cg20086357,0.0000442,0.0000134,3.292198314,0.001108906,gain,ns,0.000129198,0.0000228,5.666574518,3.33E-08,pos,yes,0.033722246,0.006679611,5.048534748,0.000000761,pos,ns,6.118769103,-0.000721929,0.000229711,-3.142768815,0.00183539,neg,ns,0.34985172,Arx,Arx_Intron,X,93292237,93292286,93292285,93292286,50,+,ATTTGGTTGTTAGACAAATCCGCTCAGTTCCAAGCAGGTATTTGGCTGCG,"Intron (Arx-201/Arx, intron 3 of 4)",20,93286496,93298357,11862,1,Arx-201,5741,Arx-203;Arx-201;Arx-202,Arx;Arx;Arx,5792;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,32,11878,ENSMUSG00000035277,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
6841,cg09556778,0.0000892,0.0000083,10.75196346,3.98E-23,gain,yes,-0.0000798,0.0000141,-5.661752214,3.42E-08,neg,yes,0.012044909,0.004130357,2.916190701,0.003801828,pos,ns,2.420007513,-0.000498677,0.000142043,-3.510757703,0.000513144,neg,ns,0.708985437,Nr6a1,Nr6a1_Exon,2,38739015,38739064,38739015,38739016,50,+,CGTGTAATCCTTGATTGAGAGCTCGCAGAAGAAAGGCAGTTTCTTGATCC,"Exon (Nr6a1-202/Nr6a1, exon 9 of 12)",2,38723370,38927688,204319,2,Nr6a1-202,188624,Nr6a1-202;Nr6a1-210;Nr6a1-201;Nr6a1-204;Nr6a1-205;Nr6a1-207;Nr6a1-206;Nr6a1-208;Nr6a1-209;Nr6a1-211,Nr6a1;Nr6a1;Nr6a1;Nr6a1;Nr6a1;Nr6a1;Nr6a1;Nr6a1;Nr6a1;Nr6a1,0;0;0;0;0;45456;46047;0;45405;24701,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,12,14536,ENSMUSG00000063972,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22811,cg08815464,0.0000294,0.0000247,1.190748191,0.23466343,gain,ns,0.000237136,0.000042,5.647486412,3.68E-08,pos,yes,0.035955687,0.012301559,2.922856054,0.003723551,pos,ns,2.429042739,-0.000150384,0.00042305,-0.355475986,0.722474786,neg,ns,0.598233175,Faah,Faah_Intron,4,115972603,115972652,115972651,115972652,50,-,GGCTGCTGGGGAAAGTGACACGGGCTCCAGGTGATGGATTCGTGCCATCG,"Intron (Faah-202/Faah, intron 13 of 14)",4,115967145,116017675,50531,2,Faah-202,45023,Faah-202,Faah,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,20,14073,ENSMUSG00000034171,mapped to different genes,4,115972623,115972781,159,*,159,18,0.666666667,1.042622951,0.113207547,4.61E-15,CpGisland,TRUE,U13,Hc-P
2908,cg23603747,-0.00000957,0.00000522,-1.834540316,0.06753205,loss,ns,0.00005,0.00000886,5.639619148,3.84E-08,pos,yes,0.004495027,0.002595945,1.731556839,0.084347342,pos,ns,1.0739286,-0.00000664,0.0000893,-0.074348396,0.940781121,neg,ns,0.911115495,Lrmda,Lrmda_Intron,14,22046216,22046265,22046216,22046217,50,-,CGTTTTGCATTTTAATGACAAATCAAGTACGCTAACTTGCATTTGAAACG,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,26504,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206,Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19558,cg14572301,0.0000287,0.0000116,2.46747025,0.01414712,gain,ns,0.00011149,0.0000198,5.638854824,3.85E-08,pos,yes,0.027240891,0.005792475,4.702806641,0.00000387,pos,ns,5.412441526,-0.000575846,0.000199203,-2.890751075,0.004114597,neg,ns,0.488622835,Tmem28,Tmem28_Exon,X,99821496,99821545,99821544,99821545,50,-,TGGACGCAGCTTGCACCAAATTGCAATCTTTGCAGAGACTTTTCGAACCG,Promoter (<=1kb),20,99821021,99848790,27770,1,Tmem28-201,475,Tmem28-201,Tmem28,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,7,620592,ENSMUSG00000071719,conserved gene and region,X,99821158,99821708,551,*,551,58,0.691470054,0.900783584,0.105263158,1.24E-45,CpGisland,TRUE,NA,NRS
25336,cg14676280,-0.0000593,0.00000951,-6.238025755,1.45E-09,loss,yes,-0.0000908,0.0000162,-5.621937684,4.21E-08,neg,yes,0.026509034,0.004734297,5.599359709,4.74E-08,pos,ns,7.323927295,-0.000602296,0.000162812,-3.699329641,0.000255671,neg,ns,0.837986319,Srrm1,Srrm1_Exon,4,135346367,135346416,135346415,135346416,50,+,ACACTCACTCTGCTGTGACCTAATAAGGTGATGGTGCTATACTTCAGACG,"Exon (Srrm1-212/Srrm1, exon 3 of 16)",4,135320484,135353321,32838,2,Srrm1-203,6905,Srrm1-203;Srrm1-202;Srrm1-208;Srrm1-201;Srrm1-212;Srrm1-204;Srrm1-214;Srrm1-205;Srrm1-207;Srrm1-209;Srrm1-206,Srrm1;Srrm1;Srrm1;Srrm1;Srrm1;Srrm1;Srrm1;Srrm1;Srrm1;Srrm1;Srrm1,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,8,51796,ENSMUSG00000028809,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6818,cg04411685,0.0000147,0.00000549,2.68179738,0.007715103,gain,ns,-0.0000523,0.00000932,-5.612705104,4.42E-08,neg,yes,0.000341468,0.002731548,0.125009046,0.900597415,pos,ns,0.045469304,-0.000151013,0.0000939,-1.607586935,0.10894366,neg,ns,0.821727693,Psmb7,Psmb7_Intron,2,38595091,38595140,38595139,38595140,50,+,CGCTACATGACAAATGGGCAGCACTTGTAAAAGGCACAAAGAGGTCCACG,"Intron (Psmb7-201/Psmb7, intron 6 of 7)",2,38588036,38644087,56052,2,Psmb7-201,48947,Nek6-201;Psmb7-201,Nek6;Psmb7,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,9,19177,ENSMUSG00000026750,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17541,cg03866292,0.0000409,0.0000571,0.716389836,0.474289999,gain,ns,0.000544312,0.0000971,5.607247722,4.55E-08,pos,yes,0.079932027,0.028439076,2.810640767,0.005258913,pos,ns,2.279104014,0.000696836,0.000978017,0.712498332,0.476692163,pos,ns,0.39598174,Mtch2,Mtch2_Exon,2,90847307,90847356,90847307,90847308,50,-,CGCGGCCAGTCAGGTGCTCCTGGGCTCCGGTCTCACCATCCTGTCCCAGC,Promoter (<=1kb),2,90847155,90866810,19656,1,Mtch2-205,152,Mtch2-205;Mtch2-203;Mtch2-210;Mtch2-211;Mtch2-209;Mtch2-202;Mtch2-201;Mtch2-208,Mtch2;Mtch2;Mtch2;Mtch2;Mtch2;Mtch2;Mtch2;Mtch2,0;0;0;0;0;0;0;-4835,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,56428,ENSMUSG00000027282,conserved gene and region,2,90847027,90847575,549,*,549,62,0.695810565,0.948001671,0.112932605,7.90E-51,CpGisland,TRUE,U1,Pr-A
22816,cg07085643,0.0000276,0.0000175,1.575300269,0.116207097,gain,ns,0.00016656,0.0000298,5.593819454,4.88E-08,pos,yes,0.017330177,0.008723252,1.986664786,0.047839672,pos,ns,1.320211809,0.000374013,0.000299992,1.246742023,0.213433293,pos,ns,0.712773468,Faah,Faah_Intron,4,115972780,115972829,115972780,115972781,50,-,CGCAGGCATGGAAAATAGAGTGTCTGGGATTAATGATATTGAAAATGATA,"Intron (Faah-202/Faah, intron 13 of 14)",4,115967145,116017675,50531,2,Faah-202,44846,Faah-202,Faah,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,20,14073,ENSMUSG00000034171,mapped to different genes,4,115972623,115972781,159,*,159,18,0.666666667,1.042622951,0.113207547,4.61E-15,CpGisland,TRUE,U13,Hc-P
4941,cg17186761,0.0000224,0.00000585,3.832071801,0.000153846,gain,ns,-0.0000556,0.00000994,-5.593216971,0.000000049,neg,yes,0.014814323,0.002913076,5.085456783,0.000000636,pos,ns,6.19651881,-0.000545818,0.00010018,-5.448346738,0.000000104,neg,yes,0.885765545,Marchf6,Marchf6_Exon,15,31500937,31500986,31500985,31500986,50,+,AGCGTCAGTAGTGAGCTCACGGAGCCAGTAAACAAGCACTTGTAGATGCG,"Exon (Marchf6-201/Marchf6, exon 5 of 26)",15,31455891,31531053,75163,2,Marchf6-201,30067,Marchf6-201;Marchf6-202;Marchf6-204,Marchf6;Marchf6;Marchf6,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,7,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27962,cg17612293,0.0000054,0.0000104,0.519270114,0.603942918,gain,ns,0.0000989,0.0000177,5.59205968,4.93E-08,pos,yes,0.014791833,0.005178733,2.856264632,0.004576072,pos,ns,2.339507185,0.0000725,0.000178096,0.407339237,0.684039983,pos,ns,0.593209293,Gm21362,Gm21362_Intergenic_downstream,1,193989180,193989229,193989228,193989229,50,-,AGGAAGAATTGCCCTCCCATCTCTCTTGTAAATGTCGACAGGTTCCATCG,Distal Intergenic,1,193867009,193867936,928,1,Gm21362-201,122220,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,5,100861968,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12894,cg26717772,-0.000000634,0.0000122,-0.051884086,0.958654471,loss,ns,0.000116153,0.0000208,5.591847312,4.93E-08,pos,yes,0.01829699,0.006085467,3.006669725,0.002857282,pos,ns,2.544046916,-0.000363258,0.000209279,-1.735759722,0.083599973,neg,ns,0.404583916,Iqcj,Iqcj_Exon,3,68055350,68055399,68055398,68055399,50,+,GCTGAGCAGCTCTGTCAGCATGAACACCTTCTCCGACAGCAGCACACCCG,"Exon (Iqcj-201/Iqcj, exon 4 of 4)",3,67892220,68056593,164374,1,Iqcj-201,163130,Iqcj-201;Iqschfp-201,Iqcj;Iqschfp,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,2,208426,ENSMUSG00000051777,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24918,cg24549671,0.000152952,0.0000188,8.132654056,1.02E-14,gain,yes,-0.000178597,0.000032,-5.589754572,4.99E-08,neg,yes,0.072839532,0.009360512,7.781575806,1.08E-13,pos,yes,12.96831537,-0.002443819,0.000321907,-7.591686979,3.74E-13,neg,yes,0.517179011,Kpna6,Kpna6_Exon,4,129648099,129648148,129648147,129648148,50,-,AGTAGTGCTCAATGAGGTCGAAGGCCTTCTGGTAGATCTCCTGGTTCTCG,"Exon (Kpna6-202/Kpna6, exon 14 of 14)",4,129643980,129672767,28788,2,Kpna6-202,24619,Kpna6-202;Kpna6-201,Kpna6;Kpna6,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,16650,ENSMUSG00000003731,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17860,cg15051610,0.000057,0.00000564,10.11768674,5.58E-21,gain,yes,-0.0000535,0.00000958,-5.58733886,5.05E-08,neg,yes,-0.000448904,0.00280547,-0.160010306,0.872977166,neg,ns,0.058997116,-0.000158176,0.0000965,-1.639474054,0.102128934,neg,ns,0.875646224,Phf21a,Phf21a_Intron,2,92165510,92165559,92165510,92165511,50,-,CGGATTGGCAGCTGGGACTGAAGGCGATAGAAATAAGCTATTGATCAAGG,"Intron (Phf21a-201/Phf21a, intron 1 of 15)",2,92093117,92364666,271550,1,Phf21a-201,72393,Phf21a-201;Phf21a-202;Phf21a-204;Phf21a-209,Phf21a;Phf21a;Phf21a;Phf21a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,21,192285,ENSMUSG00000058318,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19274,cg23437216,0.000118881,0.0000129,9.228843573,4.40E-18,gain,yes,-0.000121787,0.0000219,-5.565123946,5.67E-08,neg,yes,0.0467354,0.006411246,7.289597014,2.60E-12,pos,yes,11.58462498,-0.001076654,0.000220482,-4.883179351,0.00000167,neg,yes,0.548292498,Lmbr1l,Lmbr1l_Exon,15,98904769,98904818,98904817,98904818,50,+,AAATTGCCCAGCCAGTTGAAGCGTCCAAAGTCACCCAGCAGGTCAAAGCG,"Exon (Lmbr1l-201/Lmbr1l, exon 16 of 17)",15,98903917,98918231,14315,2,Lmbr1l-201,13413,Lmbr1l-201;Lmbr1l-202;Lmbr1l-208;Lmbr1l-203;Lmbr1l-205;Lmbr1l-207,Lmbr1l;Lmbr1l;Lmbr1l;Lmbr1l;Lmbr1l;Lmbr1l,0;0;0;4119;4445;4642,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,74775,ENSMUSG00000022999,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13484,cg19447278,0.0000358,0.00000801,4.465674919,0.0000112,gain,ns,-0.0000756,0.0000136,-5.559870698,5.83E-08,neg,yes,0.026953401,0.003986128,6.761799408,6.78E-11,pos,yes,10.16866066,-0.000651212,0.000137083,-4.750504345,0.00000311,neg,ns,0.863995901,Tlk1,Tlk1_Exon,2,70768891,70768940,70768891,70768892,50,+,CGTCACTTGCACAGTCCTTTCAGCTGCCTGCCAGTTGTTTCTGTGGAAGG,"Exon (Tlk1-205/Tlk1, exon 4 of 22)",2,70712407,70825397,112991,2,Tlk1-205,56457,Tlk1-205;Tlk1-201;Tlk1-203;Tlk1-204;Tlk1-202,Tlk1;Tlk1;Tlk1;Tlk1;Tlk1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,228012,ENSMUSG00000041997,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19389,cg25996747,0.0000363,0.0000157,2.320840755,0.020943962,gain,ns,0.000147695,0.0000266,5.554337811,0.00000006,pos,yes,0.034002119,0.007790234,4.364710658,0.0000174,pos,ns,4.760363914,-0.000591065,0.000267906,-2.206244825,0.028099961,neg,ns,0.419311937,Efnb1,Efnb1_Intergenic_downstream,X,99199396,99199445,99199396,99199397,50,-,CGGGGCCTGCTCAGGAAGCAGGAGCTGAGCTGAGATAATGGGTCTGAAAT,Distal Intergenic,20,99138131,99147230,9100,1,Efnb1-202,61314,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,14,13641,ENSMUSG00000031217,conserved gene and region,X,99199338,99199570,233,*,233,13,0.60944206,0.615650407,0.055793991,0.000000389,CpGisland,TRUE,NA,NRS
11354,cg01370575,0.00000712,0.00000914,0.778947878,0.436604619,gain,ns,-0.0000861,0.0000155,-5.550512614,6.12E-08,neg,yes,0.025226241,0.004546606,5.548366902,6.19E-08,pos,ns,7.208343157,-0.000995785,0.000156357,-6.368646917,6.87E-10,neg,yes,0.879243816,Clk3,Clk3_Exon,9,57758701,57758750,57758701,57758702,50,+,CGCTTACTGCTCTGTTGGCTTCTCTGCATGCACCGCCCCCCGAAACGCCA,"Exon (Clk3-207/Clk3, exon 3 of 12)",9,57750624,57765103,14480,2,Clk3-207,6353,Clk3-207;Clk3-201;Clk3-205;Clk3-203;Clk3-206;Clk3-209;Clk3-208;Clk3-204,Clk3;Clk3;Clk3;Clk3;Clk3;Clk3;Clk3;Clk3,0;0;0;0;-3380;0;5558;6103,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,14,102414,ENSMUSG00000032316,conserved gene and region,9,57758611,57758779,169,*,169,14,0.615384615,0.908602151,0.082840237,7.36E-10,CpGisland,TRUE,U12,Tr-I
11810,cg16695688,0.000025,0.0000115,2.16460316,0.031181091,gain,ns,0.000108643,0.0000196,5.546865624,6.24E-08,pos,yes,0.02942927,0.005738138,5.128714326,0.000000515,pos,ns,6.288171846,-0.000514585,0.000197334,-2.607684571,0.009556831,neg,ns,0.383500623,Gm14660,Gm14660_Intergenic_downstream,X,60831512,60831561,60831512,60831513,50,+,CGTTTTGTGTTTGCCAAACAAAGCATGAAGGCAGAGTGAGTAAAGGGGGC,Distal Intergenic,20,60818208,60818782,575,1,Gm14660-201,13304,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,671636,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3995,cg12034923,0.0000325,0.00000754,4.308515819,0.0000221,gain,ns,-0.000071,0.0000128,-5.543567326,6.35E-08,neg,yes,-0.014003254,0.003750675,-3.73352902,0.000224619,neg,ns,3.648552568,0.000201895,0.000128985,1.565255103,0.118543307,pos,ns,0.770638649,L3mbtl3,L3mbtl3_Exon,10,26327684,26327733,26327732,26327733,50,+,CACCAATAGTCATAGCTCTCATCCCAGTTGTCAAAATGTACCAGGAAACG,"Exon (L3mbtl3-202/L3mbtl3, exon 11 of 21)",10,26274468,26373956,99489,2,L3mbtl3-202,46223,L3mbtl3-202;L3mbtl3-201;L3mbtl3-203,L3mbtl3;L3mbtl3;L3mbtl3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,6,237339,ENSMUSG00000039089,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19560,cg13102615,0.0000229,0.0000134,1.711923702,0.087910834,gain,ns,0.000126054,0.0000227,5.543288253,6.36E-08,pos,yes,0.022468801,0.006662025,3.372668088,0.00083886,pos,ns,3.076310513,-0.000434068,0.000229107,-1.894612745,0.059074174,neg,ns,0.494400932,Tmem28,Tmem28_Exon,X,99821828,99821877,99821828,99821829,50,+,CGACACGCTCAGGAAAAATATGACGAGTTCGACCTCGTGCTGCATAAATA,Promoter (<=1kb),20,99821021,99848790,27770,1,Tmem28-201,807,Tmem28-201,Tmem28,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,7,620592,ENSMUSG00000071719,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
25159,cg02115892,0.0000182,0.0000196,0.929734095,0.353232182,gain,ns,-0.000183922,0.0000333,-5.522322402,7.09E-08,neg,yes,0.022803499,0.009757278,2.337075758,0.020071664,pos,ns,1.697416616,0.00048049,0.000335552,1.431939208,0.153168696,pos,ns,0.457510254,Wasf2,Wasf2_threeUTR,4,133198116,133198165,133198116,133198117,50,-,CGATGTGCTATGTTCTCATCCTACAGTTGGTTTGGTAATGATCTGCAAGT,3' UTR,4,133130505,133199756,69252,1,Wasf2-201,67611,Wasf2-201;Wasf2-202,Wasf2;Wasf2,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,5,242687,ENSMUSG00000028868,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23070,cg24677551,-0.0000164,0.0000176,-0.932532027,0.351787358,loss,ns,-0.000164903,0.0000299,-5.520426209,7.16E-08,neg,yes,0.042574514,0.008751319,4.864925428,0.00000182,pos,ns,5.738740245,-0.002153723,0.000300957,-7.156244624,6.03E-12,neg,yes,0.719003427,Rnf220,Rnf220_Exon,4,117272681,117272730,117272681,117272682,50,-,CGTCCGAGCCTTTTATTACTGTCTCCGGGCGACATTTTAATGGCTGCTCC,"Exon (Rnf220-211/Rnf220, exon 2 of 2)",4,117271463,117497052,225590,2,Rnf220-201,224322,Rnf220-201;Rnf220-203;Rnf220-212;Rnf220-202;Rnf220-205;Rnf220-214;Rnf220-211;Rnf220-209;Tmem53-201;Tmem53-204;Tmem53-203;Tmem53-206;Tmem53-202;Tmem53-205,Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Tmem53;Tmem53;Tmem53;Tmem53;Tmem53;Tmem53,0;0;0;0;0;0;0;0;20730;20641;20639;20619;20341;7310,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,15,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10317,cg14064981,-0.0000124,0.0000152,-0.820475832,0.412575345,loss,ns,0.00014211,0.0000258,5.513985433,0.000000074,pos,yes,0.02632403,0.007550514,3.486389232,0.000560281,pos,ns,3.251593955,-0.000233761,0.000259662,-0.900253729,0.368684048,neg,ns,0.484331216,Phf6,Phf6_Intron,X,52913418,52913467,52913466,52913467,50,-,AGTGCGAAGCATGTAATAATATCGTGCAACCAAATTCAGGTGCCCTTCCG,"Intron (Phf6-201/Phf6, intron 1 of 10)",20,52912266,52956943,44678,1,Phf6-201,1152,Phf6-201;Phf6-202;Phf6-203,Phf6;Phf6;Phf6,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,70998,ENSMUSG00000025626,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
2608,cg23117269,0.0000915,0.00000685,13.36131732,1.80E-32,gain,yes,-0.0000641,0.0000116,-5.507510272,7.65E-08,neg,yes,-0.003550467,0.003407416,-1.041982138,0.298231882,neg,ns,0.525445932,0.00000867,0.000117181,0.073957495,0.941091905,pos,ns,0.829564143,Aftph,Aftph_threeUTR,11,20696787,20696836,20696787,20696788,50,-,CGGGCCCAAAGAAATCAAGGTTCAGAAGAGTGGAACCTCCACTAGCTTGA,3' UTR,11,20685084,20727607,42524,2,Aftph-205,30771,Aftph-205;Aftph-201;Aftph-208;Aftph-209;Aftph-203;Aftph-207;Aftph-206,Aftph;Aftph;Aftph;Aftph;Aftph;Aftph;Aftph,0;0;0;0;-3985;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,4,216549,ENSMUSG00000049659,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14320,cg12571830,0.0000513,0.00000641,8.014117139,2.28E-14,gain,yes,-0.0000599,0.0000109,-5.506054681,7.71E-08,neg,yes,-0.006936613,0.003188803,-2.17530321,0.030362783,neg,ns,1.517658421,0.000324942,0.000109663,2.963101189,0.003281381,pos,ns,0.84943943,Smg6,Smg6_Intron,11,75156592,75156641,75156640,75156641,50,+,AGCAAAGCTGGTTCCCGTTATTGGTAAACACTCAGCCCTGGCAGATAACG,"Intron (Smg6-201/Smg6, intron 16 of 18)",11,74925823,75164448,238626,1,Smg6-201,230769,Smg6-201;Smg6-202;Smg6-206,Smg6;Smg6;Smg6,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,34,103677,ENSMUSG00000038290,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21703,cg22844979,-0.0000277,0.0000202,-1.373517492,0.170584013,loss,ns,0.000188572,0.0000343,5.50487043,7.76E-08,pos,yes,0.010196731,0.010035691,1.016046693,0.310399479,pos,ns,0.508079017,-0.000176886,0.000345127,-0.512525789,0.608648055,neg,ns,0.281713058,Slitrk1,Slitrk1_threeUTR,14,108909992,108910041,108910040,108910041,50,-,AAAACATTTTCGCTTTAATACTGAAAAAATATGCCATTATAAAATCCTCG,3' UTR,14,108908800,108914158,5359,2,Slitrk1-201,4117,Slitrk1-201,Slitrk1,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,17,76965,ENSMUSG00000075478,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15183,cg00909225,0.000141061,0.0000183,7.702724963,1.81E-13,gain,yes,-0.000170973,0.0000311,-5.495486346,8.14E-08,neg,yes,0.049187362,0.009114633,5.39652712,0.000000135,pos,ns,6.868971886,-0.001928758,0.000313451,-6.153291131,2.34E-09,neg,yes,0.532946229,Ddx17,Ddx17_Exon,15,79530103,79530152,79530151,79530152,50,+,GGCTGTGCAAACTGTTGTGACATCAGTGGCTGTGGCTGCTGCCCAGACCG,"Exon (Ddx17-201/Ddx17, exon 13 of 13)",15,79527736,79546741,19006,2,Ddx17-201,16589,Ddx17-201;Ddx17-203;Ddx17-204;Ddx17-202;Kdelr3-201,Ddx17;Ddx17;Ddx17;Ddx17;Kdelr3,0;0;0;0;13692,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,14,67040,ENSMUSG00000055065,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22812,cg04770203,0.0000161,0.0000245,0.656906942,0.511728128,gain,ns,0.000228985,0.0000417,5.494789539,8.17E-08,pos,yes,0.029235321,0.012208823,2.394606107,0.01723182,pos,ns,1.763668854,-0.0000135,0.00041986,-0.032182311,0.974347373,neg,ns,0.632571291,Faah,Faah_Intron,4,115972611,115972660,115972659,115972660,50,+,GGGAAAGTGACACGGGCTCCAGGTGATGGATTCGTGCCATCGGGGAGCCG,"Intron (Faah-202/Faah, intron 13 of 14)",4,115967145,116017675,50531,2,Faah-202,45015,Faah-202,Faah,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,20,14073,ENSMUSG00000034171,mapped to different genes,4,115972623,115972781,159,*,159,18,0.666666667,1.042622951,0.113207547,4.61E-15,CpGisland,TRUE,U13,Hc-P
11453,cg11320734,0.000014,0.00000499,2.801204662,0.005411196,gain,ns,-0.0000466,0.00000848,-5.493722775,8.22E-08,neg,yes,-0.00099239,0.002483728,-0.399556729,0.689758174,neg,ns,0.161303144,-0.000222531,0.0000854,-2.605284419,0.009622568,neg,ns,0.86278768,Hnrnpk,Hnrnpk_threeUTR,13,58396166,58396215,58396214,58396215,50,-,GTTCAATGGCACTATGACATACATTTAAGCATTCCACAGCATCAGATTCG,3' UTR,13,58391142,58403343,12202,2,Hnrnpk-202,7128,Hnrnpk-202;Hnrnpk-224;Hnrnpk-221;Hnrnpk-232;Hnrnpk-216;Hnrnpk-201;Hnrnpk-205;Hnrnpk-217;Hnrnpk-206;Hnrnpk-209;Hnrnpk-213;Hnrnpk-227;Hnrnpk-234;Hnrnpk-233;Hnrnpk-228;Hnrnpk-214;Hnrnpk-215;Hnrnpk-211;Hnrnpk-208;Hnrnpk-212;Hnrnpk-231;Hnrnpk-230;Hnrnpk-203;Hnrnpk-218;Hnrnpk-226;Hnrnpk-207;Hnrnpk-219;Hnrnpk-225;Hnrnpk-229;Hnrnpk-223;Hnrnpk-220;Hnrnpk-210;Hnrnpk-204;Hnrnpk-222,Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk,0;0;0;0;0;0;0;-2298;-1381;-2191;-968;-2082;-2277;-1996;-1470;0;-446;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;6287;5840,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,19,15387,ENSMUSG00000021546,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16277,cg13896129,0.0000671,0.0000086,7.798455742,9.62E-14,gain,yes,-0.00008,0.0000146,-5.477239808,8.94E-08,neg,yes,-0.006728795,0.00428026,-1.572052986,0.11695831,neg,ns,0.931968915,0.000169049,0.000147198,1.148448099,0.251669029,pos,ns,0.833564535,Lrpprc,Lrpprc_Intron,17,84709558,84709607,84709606,84709607,50,-,ATTGGTCCCACGCCTCAATTTGACACAGGGAGTCTACACAAACACAGCCG,"Intron (Lrpprc-201/Lrpprc, intron 34 of 37)",17,84705247,84790558,85312,2,Lrpprc-201,80951,Lrpprc-201;Lrpprc-207,Lrpprc;Lrpprc,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,15,72416,ENSMUSG00000024120,conserved gene and region,17,84709606,84709717,112,*,112,11,0.6875,0.831309042,0.098214286,0.000000013,CpGisland,TRUE,U10,Tr-S
13476,cg19723283,0.0000607,0.00000896,6.776546057,6.21E-11,gain,yes,-0.000083,0.0000152,-5.453244841,0.000000101,neg,yes,0.016994225,0.004458065,3.812018703,0.00016627,pos,ns,3.779186679,-0.000888138,0.000153312,-5.792993835,0.000000017,neg,yes,0.879933354,Xpo7,Xpo7_Exon,14,70692748,70692797,70692748,70692749,50,-,CGGGCCAGTAGTCTGCAAAACTCATGGTAATTGTTTGGGTCTGATAAACT,"Exon (Xpo7-202/Xpo7, exon 10 of 28)",14,70654246,70766628,112383,2,Xpo7-202,73831,Xpo7-202;Xpo7-201;Xpo7-206;Xpo7-203;Xpo7-204,Xpo7;Xpo7;Xpo7;Xpo7;Xpo7,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,13,65246,ENSMUSG00000022100,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17054,cg05193157,0.0000123,0.0000165,0.746878667,0.455702884,gain,ns,0.000152473,0.000028,5.451671958,0.000000102,pos,yes,0.028434054,0.008193691,3.47023768,0.000593725,pos,ns,3.226414489,-0.000243737,0.00028178,-0.86498849,0.387713968,neg,ns,0.328981686,Il1rapl1,Il1rapl1_Promoter,X,88115998,88116047,88116046,88116047,50,-,CCAATGGATATTTTAGTACTAGCCAATCCACAGACAGCCACCGCTTTGCG,Promoter (<=1kb),20,86740870,88115645,1374776,2,Il1rapl1-203,-402,Il1rapl1-203;Il1rapl1-202,Il1rapl1;Il1rapl1,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,6,18,331461,ENSMUSG00000052372,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17999,cg04118889,0.0000307,0.0000134,2.295587489,0.022366805,gain,ns,0.000123855,0.0000227,5.444464275,0.000000106,pos,yes,0.030973755,0.006664636,4.647478906,0.00000498,pos,ns,5.303089408,-0.000413082,0.000229196,-1.80230858,0.07246812,neg,ns,0.46940161,Arx,Arx_threeUTR,X,93297441,93297490,93297441,93297442,50,-,CGAAAGGTCACCTCACTCAGCACCACTCAAGACCAAATGGAAACAGAGGA,3' UTR,20,93286496,93298357,11862,1,Arx-201,10945,Arx-201;Arx-202,Arx;Arx,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,32,11878,ENSMUSG00000035277,conserved gene and region,X,93297193,93297442,250,*,250,31,0.724,0.948592411,0.124,4.72E-27,CpGisland,TRUE,U3,Pr-B
16917,cg18662889,0.000137001,0.0000199,6.894765158,3.03E-11,gain,yes,-0.000183567,0.0000338,-5.437889314,0.000000109,neg,yes,0.095559103,0.009889679,9.662508271,1.77E-19,pos,yes,18.75284239,-0.002502164,0.000340105,-7.357028656,1.70E-12,neg,yes,0.634194539,Gigyf2,Gigyf2_fiveUTR,1,87386537,87386586,87386585,87386586,50,+,GTCTTGTCAAAATTCTCCATCTTGATTTGATATTCACCTTTGGAACCTCG,5' UTR,1,87327003,87450796,123794,1,Gigyf2-201,59534,Gigyf2-201;Gigyf2-205;Gigyf2-202;Gigyf2-214;Gigyf2-210;Gigyf2-206;Gigyf2-217;Gigyf2-218;Gigyf2-215;Kcnj13-201;Kcnj13-202,Gigyf2;Gigyf2;Gigyf2;Gigyf2;Gigyf2;Gigyf2;Gigyf2;Gigyf2;Gigyf2;Kcnj13;Kcnj13,0;0;0;0;0;0;0;0;0;0;2803,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,2,227331,ENSMUSG00000048000,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23068,cg22819840,0.0000414,0.0000161,2.563381579,0.010837364,gain,ns,-0.00014923,0.0000274,-5.439306909,0.000000109,neg,yes,0.037429158,0.008037691,4.656705326,0.00000477,pos,ns,5.32125357,-0.001536855,0.000276416,-5.559945982,5.83E-08,neg,yes,0.708055873,Rnf220,Rnf220_Exon,4,117272642,117272691,117272642,117272643,50,+,CGAGATTACACGCGGCCTTTGATCAGGACACAGAGCCCACGTCCGAGCCT,"Exon (Rnf220-211/Rnf220, exon 2 of 2)",4,117271463,117497052,225590,2,Rnf220-201,224361,Rnf220-201;Rnf220-203;Rnf220-212;Rnf220-202;Rnf220-205;Rnf220-214;Rnf220-211;Rnf220-209;Tmem53-201;Tmem53-204;Tmem53-203;Tmem53-206;Tmem53-202;Tmem53-205,Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Tmem53;Tmem53;Tmem53;Tmem53;Tmem53;Tmem53,0;0;0;0;0;0;0;0;20691;20602;20600;20580;20302;7271,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,15,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2076,cg16170739,0.0000854,0.00000688,12.41803639,5.17E-29,gain,yes,-0.0000635,0.0000117,-5.432557828,0.000000112,neg,yes,-0.011586494,0.003423677,-3.384224935,0.000805545,neg,ns,3.093910294,0.00029644,0.00011774,2.517752842,0.012314333,pos,ns,0.796278813,St7,St7_Exon,6,17905699,17905748,17905747,17905748,50,-,TCCTGTAGATCGCCAGTACCTACTGCAACATCTTTTCTCCCTACACAGCG,"Exon (St7-215/St7, exon 12 of 13)",6,17693947,17943022,249076,1,St7-209,211752,St7-209;St7-208;St7-202;St7-205;St7-219;St7-217;St7-207;St7-201;St7-204;St7-215;St7-203;St7-206;St7-220;St7-216;St7-221;St7-218;St7-211,St7;St7;St7;St7;St7;St7;St7;St7;St7;St7;St7;St7;St7;St7;St7;St7;St7,0;0;0;0;0;0;0;0;0;0;0;0;0;0;65143;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,2,64213,ENSMUSG00000029534,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22813,cg15610892,0.0000349,0.000027,1.295059567,0.196263336,gain,ns,0.0002487,0.0000458,5.431223819,0.000000113,pos,yes,0.026564115,0.013415126,1.980161341,0.048569348,pos,ns,1.313637723,0.000219225,0.000461345,0.475186868,0.634988411,pos,ns,0.671826084,Faah,Faah_Intron,4,115972615,115972664,115972663,115972664,50,+,AAGTGACACGGGCTCCAGGTGATGGATTCGTGCCATCGGGGAGCCGGGCG,"Intron (Faah-202/Faah, intron 13 of 14)",4,115967145,116017675,50531,2,Faah-202,45011,Faah-202,Faah,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,20,14073,ENSMUSG00000034171,mapped to different genes,4,115972623,115972781,159,*,159,18,0.666666667,1.042622951,0.113207547,4.61E-15,CpGisland,TRUE,U13,Hc-P
20450,cg15143618,0.000115561,0.0000173,6.671041581,1.17E-10,gain,yes,-0.000159765,0.0000294,-5.428812401,0.000000115,neg,yes,0.035301776,0.008621728,4.094512832,0.000054,pos,ns,4.267370366,-0.000845524,0.000296501,-2.851677476,0.004640882,neg,ns,0.671853494,Csde1,Csde1_Exon,3,103040477,103040526,103040525,103040526,50,-,TCTCCAGCTGCCCCGGGTCAGAGTCCAACAGGGAGTGTATGCTACGAACG,"Exon (Csde1-201/Csde1, exon 5 of 20)",3,103020426,103058186,37761,1,Csde1-201,20051,Csde1-201;Csde1-211;Csde1-207;Csde1-214;Csde1-215;Csde1-216;Csde1-206;Csde1-212;Csde1-213;Csde1-205;Csde1-217;Csde1-202;Csde1-210;Csde1-209,Csde1;Csde1;Csde1;Csde1;Csde1;Csde1;Csde1;Csde1;Csde1;Csde1;Csde1;Csde1;Csde1;Csde1,0;0;0;0;0;0;0;0;0;0;0;0;0;-3016,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,10,229663,ENSMUSG00000068823,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17034,cg05111574,0.000115569,0.00000816,14.1645165,1.82E-35,gain,yes,-0.0000752,0.0000139,-5.426437136,0.000000116,neg,yes,-0.005546063,0.004060859,-1.365736469,0.173011758,neg,ns,0.76192438,0.000378556,0.000139653,2.710698555,0.007088226,pos,ns,0.825950085,Mllt3,Mllt3_Intron,4,88030440,88030489,88030488,88030489,50,+,CCAATAAAGATTACGGATCAAATGGAAGATAACTACTAACCATTGTGTCG,"Intron (Mllt3-201/Mllt3, intron 2 of 10)",4,87769925,88033364,263440,2,Mllt3-201,2875,Mllt3-201;Mllt3-203;Mllt3-205;Mllt3-206,Mllt3;Mllt3;Mllt3;Mllt3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,13,70122,ENSMUSG00000028496,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11403,cg19446833,0.0000558,0.0000127,4.40938126,0.0000143,gain,ns,0.000116379,0.0000215,5.414348156,0.000000123,pos,yes,0.033623472,0.006297181,5.339448346,0.000000181,pos,ns,6.743271338,-0.000624045,0.00021656,-2.88163342,0.004232288,neg,ns,0.359914644,Zic3,Zic3_fiveUTR,X,58030595,58030644,58030595,58030596,50,+,CGGTTTATGTGCGAGGAGTGAGTGATTGACTTTATCAGTCCAAGGACATT,Promoter (<=1kb),20,58030643,58036559,5917,1,Zic3-201,0,Zic3-204;Zic3-201;Zic3-203;Zic3-202,Zic3;Zic3;Zic3;Zic3,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,17,22773,ENSMUSG00000067860,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
14480,cg12658208,-0.00000727,0.00000597,-1.216840536,0.224590485,loss,ns,-0.0000549,0.0000101,-5.412665359,0.000000125,neg,yes,0.012304829,0.002971957,4.14031207,0.0000448,pos,ns,4.349152715,-0.000509695,0.000102205,-4.986968494,0.00000102,neg,yes,0.685414976,Smarcb1,Smarcb1_Exon,10,75916760,75916809,75916760,75916761,50,-,CGTGAAGACGCACCCTTAGTGTTAGGTTTTGTTTTTTTACCATGTGACGA,"Exon (Smarcb1-201/Smarcb1, exon 2 of 9)",10,75896769,75921617,24849,2,Smarcb1-201,4808,Smarcb1-201;Smarcb1-203;Smarcb1-205;Smarcb1-202;Smarcb1-204;Smarcb1-206,Smarcb1;Smarcb1;Smarcb1;Smarcb1;Smarcb1;Smarcb1,0;-2598;-188;0;0;-1596,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,20587,ENSMUSG00000000902,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13571,cg11765988,-0.00000448,0.00000777,-0.576698937,0.564561363,loss,ns,0.0000714,0.0000132,5.411707078,0.000000125,pos,yes,0.018791528,0.003866937,4.859537718,0.00000187,pos,ns,5.727756259,-0.000316446,0.000132984,-2.379584448,0.017936922,neg,ns,0.3356992,Rmnd5a,Rmnd5a_Exon,6,71398383,71398432,71398383,71398384,50,-,CGGAGAGCCCCAGGAGGGCACAAGCATCCCGTGTAAAGATGTCACAGATA,"Exon (Rmnd5a-201/Rmnd5a, exon 6 of 9)",6,71388634,71440637,52004,2,Rmnd5a-201,42205,Rmnd5a-201;Rmnd5a-205;Rmnd5a-204;Rmnd5a-203;Rmnd5a-202,Rmnd5a;Rmnd5a;Rmnd5a;Rmnd5a;Rmnd5a,0;0;-2101;-2196;-1185,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,68477,ENSMUSG00000002222,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19254,cg18562542,0.0000127,0.000006,2.123452427,0.034507789,gain,ns,-0.0000551,0.0000102,-5.410687745,0.000000126,neg,yes,0.004319218,0.002985695,1.446637455,0.149008842,pos,ns,0.826787959,-0.000343922,0.000102678,-3.349529322,0.000909457,neg,ns,0.839100968,Tnpo1,Tnpo1_Exon,13,98850120,98850169,98850168,98850169,50,+,AACTGCTGTAGCATGGGGGCCACCTCTTGAGGACAAACGTAACCAAGACG,"Exon (Tnpo1-201/Tnpo1, exon 20 of 24)",13,98839019,98891040,52022,2,Tnpo1-201,40871,Tnpo1-201;Tnpo1-202;Tnpo1-206;Tnpo1-204,Tnpo1;Tnpo1;Tnpo1;Tnpo1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,9,238799,ENSMUSG00000009470,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21146,cg25245209,-0.0000248,0.0000144,-1.723046592,0.085877295,loss,ns,0.00013229,0.0000245,5.41049391,0.000000126,pos,yes,0.044707069,0.007163216,6.241200816,1.43E-09,pos,ns,8.846160068,-0.000784573,0.000246342,-3.18488653,0.001595406,neg,ns,0.327157483,Gm17304,Gm17304_Intron,5,106561003,106561052,106561003,106561004,50,+,CGATGTTTGATTACACTTTAATAAAGTACAAGAAAACTGTCTGGCTGCCT,"Intron (Gm28050-202/Gm28050-202, intron 1 of 2)",5,106609098,106609201,104,1,Gm17304-201,-48046,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,35,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
22303,cg19127048,-0.0000572,0.00000873,-6.552720461,2.35E-10,loss,yes,-0.0000802,0.0000148,-5.407668699,0.000000128,neg,yes,0.010425055,0.004343049,2.40040031,0.016966445,pos,ns,1.770409158,-0.00057539,0.000149357,-3.852443432,0.000142128,neg,ns,0.733086019,Setd5,Setd5_Exon,6,113110128,113110177,113110128,113110129,50,-,CGTCTAGCCCTGCATCATTGTTCTTGTTTTTATGTCCCAGTTGACCTTGG,"Exon (Setd5-212/Setd5, exon 4 of 18)",6,113077365,113153435,76071,1,Setd5-201,32763,Setd5-209;Setd5-201;Setd5-206;Setd5-205;Setd5-203;Setd5-212;Setd5-202;Setd5-204;Setd5-210;Setd5-214;Setd5-207,Setd5;Setd5;Setd5;Setd5;Setd5;Setd5;Setd5;Setd5;Setd5;Setd5;Setd5,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,19,72895,ENSMUSG00000034269,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14428,cg10512285,0.0000293,0.0000109,2.699247654,0.007330887,gain,ns,0.0000998,0.0000185,5.404657814,0.00000013,pos,yes,0.022474317,0.005407709,4.155977839,0.0000419,pos,ns,4.377294256,-0.000427518,0.000185971,-2.298846359,0.022178567,neg,ns,0.18525691,Rab39b,Rab39b_fiveUTR,X,75578185,75578234,75578185,75578186,50,-,CGCAAAGGTGATGAAATGGCAGCAGCATCAGCACCACGCACTCTGACTCA,Promoter (<=1kb),20,75572046,75578231,6186,2,Rab39b-201,0,Rab39b-201,Rab39b,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,3,67790,ENSMUSG00000031202,conserved gene and region,X,75578153,75578359,207,*,207,12,0.497584541,0.943768997,0.057971015,0.00000084,CpGisland,TRUE,U15,NS
19586,cg19940131,0.0000287,0.0000133,2.153870422,0.032020933,gain,ns,0.000122156,0.0000227,5.39270906,0.000000138,pos,yes,0.031928796,0.006636302,4.811233096,0.00000235,pos,ns,5.629706039,-0.000482545,0.000228222,-2.114368266,0.035281906,neg,ns,0.360303799,Eda,Eda_Exon,X,99975881,99975930,99975929,99975930,50,+,CGGGCGAAGGGAACAGCTGCCTGCTCTTCCTGGGTTTCTTTGGCCTCTCG,Promoter (<=1kb),20,99975606,100311299,335694,1,Eda-211,275,Eda-211;Eda-208;Eda-209;Eda-202;Eda-203;Eda-206;Eda-205;Eda-207;Eda-204;Eda-201,Eda;Eda;Eda;Eda;Eda;Eda;Eda;Eda;Eda;Eda,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,9,13607,ENSMUSG00000059327,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22809,cg06184921,0.00000928,0.0000242,0.382762831,0.702157932,gain,ns,0.000221935,0.0000412,5.388966041,0.000000141,pos,yes,0.032025899,0.012065292,2.654382479,0.008355429,pos,ns,2.07803125,-0.000104249,0.000414924,-0.251247356,0.801789335,neg,ns,0.488773472,Faah,Faah_Intron,4,115972575,115972624,115972623,115972624,50,-,ATTACCTCCTAAGTGCCCAAACAAATGTGGCTGCTGGGGAAAGTGACACG,"Intron (Faah-202/Faah, intron 13 of 14)",4,115967145,116017675,50531,2,Faah-202,45051,Faah-202,Faah,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,20,14073,ENSMUSG00000034171,mapped to different genes,4,115972623,115972781,159,*,159,18,0.666666667,1.042622951,0.113207547,4.61E-15,CpGisland,TRUE,U13,Hc-P
22814,cg16072358,0.0000222,0.0000175,1.266108268,0.206424931,gain,ns,0.000160365,0.0000298,5.387439687,0.000000142,pos,yes,0.012083931,0.008720567,1.385681735,0.166840179,pos,ns,0.777699352,0.000327563,0.0002999,1.092241809,0.275574937,pos,ns,0.769758262,Faah,Faah_Intron,4,115972719,115972768,115972719,115972720,50,+,CGCCACGAGCTGGTGATGAATATGTGTCACTTTACACGGCGCACACTCGG,"Intron (Faah-202/Faah, intron 13 of 14)",4,115967145,116017675,50531,2,Faah-202,44907,Faah-202,Faah,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,20,14073,ENSMUSG00000034171,mapped to different genes,4,115972623,115972781,159,*,159,18,0.666666667,1.042622951,0.113207547,4.61E-15,CpGisland,TRUE,U13,Hc-P
22306,cg12386526,-0.0000216,0.00000597,-3.621720728,0.000341779,loss,ns,-0.0000546,0.0000101,-5.385036724,0.000000143,neg,yes,0.001139982,0.002972319,0.383532868,0.701587599,pos,ns,0.153918096,-0.000363052,0.000102218,-3.55175379,0.000442127,neg,ns,0.762165402,Setd5,Setd5_Exon,6,113110654,113110703,113110654,113110655,50,-,CGAATTCTCTGCACTAGGTGAGAATTGCTGACAACAAGGAATGAGAGATT,"Exon (Setd5-204/Setd5, exon 1 of 6)",6,113077365,113153435,76071,1,Setd5-201,33289,Setd5-209;Setd5-201;Setd5-206;Setd5-205;Setd5-203;Setd5-212;Setd5-202;Setd5-204;Setd5-210;Setd5-214;Setd5-207,Setd5;Setd5;Setd5;Setd5;Setd5;Setd5;Setd5;Setd5;Setd5;Setd5;Setd5,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,19,72895,ENSMUSG00000034269,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5651,cg24886640,-0.0000569,0.0000121,-4.710893555,0.00000373,loss,ns,-0.00011014,0.0000205,-5.36687828,0.000000157,neg,yes,0.017606842,0.006012322,2.928459469,0.003658886,pos,ns,2.436651066,-0.000939045,0.000206763,-4.541645072,0.000008,neg,ns,0.588440058,Fam13b,Fam13b_Exon,18,34497992,34498041,34497992,34497993,50,+,CGTGGCGGACTATGAATGGAACCTCATTGTCTGGATGTCCTCCCTGCTGC,"Exon (Fam13b-201/Fam13b, exon 3 of 21)",18,34442351,34506823,64473,2,Fam13b-201,8782,Fam13b-201;Fam13b-206;Fam13b-212;Fam13b-209;Fam13b-203;Fam13b-213;Fam13b-205,Fam13b;Fam13b;Fam13b;Fam13b;Fam13b;Fam13b;Fam13b,0;0;-3798;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,225358,ENSMUSG00000036501,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8886,cg23340456,0.0000223,0.00000392,5.693232419,2.89E-08,gain,yes,-0.0000357,0.00000666,-5.361206456,0.000000162,neg,yes,-0.006069181,0.001951757,-3.109598903,0.002047392,neg,ns,2.688799079,-0.00000411,0.0000671,-0.061294038,0.951164536,neg,ns,0.896843067,Gbf1,Gbf1_Exon,19,46254573,46254622,46254573,46254574,50,-,CGCAGAGCACACTCTCGTAGACATGGTGCAGCTGCTCTTCACAAGGTAAA,"Exon (Gbf1-201/Gbf1, exon 7 of 40)",19,46152509,46286510,134002,1,Gbf1-201,102064,Gbf1-201;Gbf1-204;Gbf1-214;Gbf1-213;Gbf1-210,Gbf1;Gbf1;Gbf1;Gbf1;Gbf1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,18,107338,ENSMUSG00000025224,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11156,cg07117595,-0.0000632,0.0000134,-4.72613076,0.00000348,loss,ns,0.000121751,0.0000227,5.357319524,0.000000165,pos,yes,0.030946849,0.006657977,4.648086068,0.00000496,pos,ns,5.304283857,-0.000528175,0.000228967,-2.30677239,0.021726515,neg,ns,0.425014641,Fhl1,Fhl1_Exon,X,56791262,56791311,56791310,56791311,50,+,AGCCACCCAGTCTCTAAAGCTAGGAAGCCCCCAGTGTGCCACGGGAAACG,"Exon (Fhl1-203/Fhl1, exon 7 of 8)",20,56731787,56793346,61560,1,Fhl1-201,59475,Fhl1-201;Fhl1-203;Fhl1-206;Fhl1-205;Fhl1-204;Fhl1-202;Fhl1-210;Fhl1-207;Fhl1-208;Fhl1-209,Fhl1;Fhl1;Fhl1;Fhl1;Fhl1;Fhl1;Fhl1;Fhl1;Fhl1;Fhl1,0;0;0;0;0;0;11443;0;3537;3264,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,11,14199,ENSMUSG00000023092,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8723,cg16743922,0.0000985,0.00000608,16.20669357,3.24E-43,gain,yes,-0.0000552,0.0000103,-5.339690549,0.00000018,neg,yes,-0.008206272,0.003026302,-2.711650248,0.007068388,neg,ns,2.150679593,0.000204729,0.000104074,1.967138726,0.05005872,pos,ns,0.742959783,Fbxw4,Fbxw4_Intron,19,45616881,45616930,45616929,45616930,50,+,CCTAGTAGAGACACCAGACCTTTTCAAACAAGGGACAACAAGGAAAATCG,"Intron (Fbxw4-206/Fbxw4, intron 1 of 4)",19,45578254,45631138,52885,2,Fbxw4-206,14208,Fbxw4-206;Fbxw4-201;Fbxw4-208,Fbxw4;Fbxw4;Fbxw4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,14,30838,ENSMUSG00000040913,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8388,cg23812660,0.000038,0.00000865,4.395738004,0.0000152,gain,ns,-0.0000784,0.0000147,-5.337105374,0.000000183,neg,yes,-0.004146828,0.004304404,-0.963392077,0.336101689,neg,ns,0.473529305,0.0000984,0.000148028,0.664982637,0.506555995,pos,ns,0.773370707,Zeb2,Zeb2_Intron,2,45083179,45083228,45083227,45083228,50,-,AAAATTTACAGGATTCTTAATCACGCTGCTCATTTGGGTGCGCAGCAGCG,"Intron (Zeb2-212/Zeb2, intron 3 of 10)",2,44983632,45117395,133764,2,Zeb2-212,34167,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15354,cg00251628,0.0000147,0.00000454,3.238159839,0.001333428,gain,ns,-0.0000411,0.00000771,-5.332021788,0.000000188,neg,yes,0.002368044,0.00225895,1.048293769,0.295319879,pos,ns,0.529707319,-0.000172829,0.0000777,-2.224743116,0.026818116,neg,ns,0.860861709,Psmd11,Psmd11_threeUTR,11,80471954,80472003,80472002,80472003,50,-,AAGGCTTACACTACCTAAAGCTGTGCTCTCTGCCTCCTGGGAGAGGGCCG,3' UTR,11,80428625,80473248,44624,1,Psmd11-201,43329,Psmd11-214;Psmd11-201;Psmd11-204;Psmd11-215;Psmd11-209;Psmd11-205;Psmd11-203;Psmd11-213;Psmd11-202,Psmd11;Psmd11;Psmd11;Psmd11;Psmd11;Psmd11;Psmd11;Psmd11;Psmd11,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,TRUE,FALSE,threeUTR,4,4,69077,ENSMUSG00000017428,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25779,cg09851167,0.0000961,0.0000067,14.3436424,3.87E-36,gain,yes,-0.0000606,0.0000114,-5.323059515,0.000000196,neg,yes,0.004270516,0.003332878,1.28132984,0.20103546,pos,ns,0.696727332,-0.000369191,0.000114617,-3.221069392,0.001412777,neg,ns,0.190219571,Uncx,Uncx_Promoter,5,139540711,139540760,139540711,139540712,50,+,CGTCTTATTATCAAGTTAATTAAAGCTAGCATCTGACAATGTCACTCGGC,Promoter (2-3kb),5,139543494,139548179,4686,1,Uncx-201,-2734,Uncx-201;Uncx-202,Uncx;Uncx,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,22,88,22255,ENSMUSG00000029546,conserved gene and region,5,139540545,139540712,168,*,168,16,0.690476191,0.8,0.095238095,3.56E-12,CpGisland,TRUE,U13,Hc-P
15890,cg24327048,0.00000599,0.000021,0.285420323,0.775512746,gain,ns,0.000189801,0.0000357,5.322933965,0.000000196,pos,yes,0.022453069,0.010446358,2.149368161,0.032378996,pos,ns,1.489736616,-0.000419019,0.000359249,-1.166374914,0.244359412,neg,ns,0.688257317,Gm6411,Gm6411_Intron,13,83750000,83750049,83750048,83750049,50,+,TTTGGAAGCCATGCATAGAAAATAGCTCATTTACATGCATCTGCTTAGCG,"Intron (C130071C03Rik-204/C130071C03Rik-204, intron 3 of 3)",13,83761132,83762335,1204,2,Gm6411-201,12286,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,36,623241,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21468,cg01809820,0.0000105,0.00000855,1.2321659,0.21882086,gain,ns,0.0000773,0.0000145,5.320630206,0.000000199,pos,yes,0.008862388,0.00425753,2.081579515,0.038201131,pos,ns,1.417923775,-0.0000576,0.000146416,-0.393319226,0.694354079,neg,ns,0.971986439,Bcl11b,Bcl11b_Exon,12,107915489,107915538,107915537,107915538,50,+,AGACGCTGAAGGGCATCTGGCAGATGTCGCAGCGGTACACCTCCTTGCCG,"Exon (Bcl11b-201/Bcl11b, exon 4 of 4)",12,107910403,108003602,93200,2,Bcl11b-201,88064,Bcl11b-201;Bcl11b-202;Bcl11b-203,Bcl11b;Bcl11b;Bcl11b,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,11,39,58208,ENSMUSG00000048251,conserved gene and region,12,107915259,107916962,1704,*,1704,150,0.66314554,0.800892387,0.088028169,2.06E-104,CpGisland,TRUE,U15,NS
26817,cg27634685,0.00000102,0.00000422,0.241967719,0.808965165,gain,ns,-0.0000381,0.00000717,-5.316699472,0.000000203,neg,yes,0.001971654,0.002099465,0.939122031,0.348399234,pos,ns,0.457922809,-0.0000749,0.0000722,-1.037504114,0.30030956,neg,ns,0.885763762,H13,H13_Exon,2,152681050,152681099,152681098,152681099,50,+,GATATTCTCCCAGGAGTACATCAACCTCCTGCTGTCCATGTATTTCTTCG,"Exon (H13-204/H13, exon 3 of 12)",2,152669461,152708670,39210,1,H13-204,11589,H13-204;H13-206;H13-203;H13-202;H13-201,H13;H13;H13;H13;H13,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,4,14950,ENSMUSG00000019188,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20449,cg10418984,0.0000482,0.0000114,4.218354378,0.0000323,gain,ns,-0.000103236,0.0000194,-5.3128511,0.000000207,neg,yes,0.019196927,0.005692709,3.372195648,0.000840249,pos,ns,3.075592067,-0.000664567,0.000195772,-3.394600376,0.00077669,neg,ns,0.835735737,Csde1,Csde1_Exon,3,103040473,103040522,103040521,103040522,50,-,TAAATCTCCAGCTGCCCCGGGTCAGAGTCCAACAGGGAGTGTATGCTACG,"Exon (Csde1-201/Csde1, exon 5 of 20)",3,103020426,103058186,37761,1,Csde1-201,20047,Csde1-201;Csde1-211;Csde1-207;Csde1-214;Csde1-215;Csde1-216;Csde1-206;Csde1-212;Csde1-213;Csde1-205;Csde1-217;Csde1-202;Csde1-210;Csde1-209,Csde1;Csde1;Csde1;Csde1;Csde1;Csde1;Csde1;Csde1;Csde1;Csde1;Csde1;Csde1;Csde1;Csde1,0;0;0;0;0;0;0;0;0;0;0;0;0;-3020,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,10,229663,ENSMUSG00000068823,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2179,cg15656937,0.0000123,0.00000863,1.42112695,0.156284986,gain,ns,-0.0000779,0.0000147,-5.311309926,0.000000208,neg,yes,0.016936259,0.004295987,3.942344125,0.0000998,pos,ns,4.000914675,-0.000696596,0.000147739,-4.715054257,0.00000366,neg,ns,0.853543561,Kdm6a,Kdm6a_threeUTR,X,18278760,18278809,18278808,18278809,50,+,AAACTGTGTCTATGCAACCTTCCAAGTGCGGAGTGTCAACCAACTGGACG,3' UTR,20,18162575,18279936,117362,1,Kdm6a-201,116185,Kdm6a-201;Kdm6a-202;Kdm6a-208;Kdm6a-204,Kdm6a;Kdm6a;Kdm6a;Kdm6a,0;0;0;4248,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,7,14,22289,ENSMUSG00000037369,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12888,cg12653841,0.00020476,0.0000135,15.20055717,2.22E-39,gain,yes,-0.000121241,0.0000229,-5.297889768,0.000000223,neg,yes,0.006372361,0.006704437,0.950469116,0.342614358,pos,ns,0.465194441,-0.0000688,0.000230565,-0.298236898,0.765722156,neg,ns,0.598592808,Psd3,Psd3_fiveUTR,8,67974149,67974198,67974197,67974198,50,+,CCAGCAGTTACCCATTGATCATAGAAAATGCCCAGTTCATCAGTTTAACG,Promoter (<=1kb),8,67689082,67974574,285493,2,Psd3-201,376,Psd3-201;Psd3-205;Psd3-204;Psd3-213;Psd3-214;Psd3-210,Psd3;Psd3;Psd3;Psd3;Psd3;Psd3,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,2,234353,ENSMUSG00000030465,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22979,cg21405047,0.000103905,0.0000143,7.264671451,3.05E-12,gain,yes,-0.000128684,0.0000243,-5.295937086,0.000000225,neg,yes,0.022158393,0.007118667,3.112716581,0.002026544,pos,ns,2.693243981,-0.000320649,0.00024481,-1.309783277,0.191238964,neg,ns,0.592800047,Cnot2,Cnot2_fiveUTR,10,116549038,116549087,116549086,116549087,50,+,AGTTTCTTTTCTCAGATAATGTATGTCCATCAGTCCTCACCATAGAGTCG,5' UTR,10,116485161,116581511,96351,2,Cnot2-210,32424,Cnot2-210;Cnot2-204;Cnot2-212;Cnot2-203;Cnot2-202;Cnot2-213;Cnot2-209;Cnot2-214;Cnot2-215;Cnot2-205;Cnot2-207;Cnot2-211;Cnot2-217;Cnot2-216;Cnot2-206;Cnot2-201;Cnot2-208;Cnot2-218,Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,6,15,72068,ENSMUSG00000020166,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4042,cg22916962,-0.0000184,0.00000843,-2.185622957,0.029591189,loss,ns,0.0000759,0.0000143,5.293800594,0.000000227,pos,yes,0.002729135,0.004197789,0.650136174,0.516085762,pos,ns,0.287278123,0.000208413,0.000144362,1.443686275,0.149837048,pos,ns,0.692627108,Gm45647,Gm45647_Intergenic_upstream,8,26626676,26626725,26626724,26626725,50,+,TGTGACTTTACGAGGTCATAAAGAAAACGATGCCACTCTGCACTGAAACG,Distal Intergenic,8,26780315,26780509,195,1,Gm45647-201,-153590,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,46,62,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4942,cg21808200,0.000163799,0.0000159,10.32731275,1.11E-21,gain,yes,-0.000142321,0.0000269,-5.28186482,0.000000241,neg,yes,0.055622196,0.007894052,7.046089737,1.20E-11,pos,yes,10.9222549,-0.001277382,0.000271476,-4.705326857,0.00000382,neg,ns,0.803057393,Marchf6,Marchf6_Exon,15,31502734,31502783,31502782,31502783,50,-,ACAACTCCCAACCATGCAAAGGCCACAAGTGTATAATGAAACCAATATCG,"Exon (Marchf6-201/Marchf6, exon 4 of 26)",15,31455891,31531053,75163,2,Marchf6-201,28270,Marchf6-201;Marchf6-202;Marchf6-204,Marchf6;Marchf6;Marchf6,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,7,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1033,cg24266105,-0.00000112,0.0000108,-0.103312427,0.917781814,loss,ns,0.0000972,0.0000184,5.278096141,0.000000246,pos,yes,0.009238649,0.005392846,1.713130524,0.087688327,pos,ns,1.057058217,-0.000111595,0.00018546,-0.601719442,0.5478007,neg,ns,0.205662578,Grm1,Grm1_Exon,10,11080147,11080196,11080147,11080148,50,-,CGAATGGAAATCAGAGAGTCCCTAATGAACTCAATGCTCTGTTCCAGAGC,"Exon (Grm1-201/Grm1, exon 2 of 9)",10,10686059,11082356,396298,2,Grm1-201,2160,Grm1-201;Grm1-203;Grm1-202;Grm1-206,Grm1;Grm1;Grm1;Grm1,0;0;0;2054,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,7,14816,ENSMUSG00000019828,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
18380,cg12083852,0.0000929,0.0000136,6.840166911,4.22E-11,gain,yes,-0.000121686,0.0000231,-5.273416094,0.000000252,neg,yes,0.029351054,0.006760324,4.341663665,0.0000192,pos,ns,4.717330185,-0.0000156,0.000232487,-0.06688834,0.946713714,neg,ns,0.52098589,Pi4kb,Pi4kb_Exon,3,94989299,94989348,94989347,94989348,50,+,CCAGGAGCTCTCCTCCAGCACCGAGAGTATTGATAATTCATTCAGTTCCG,"Exon (Pi4kb-202/Pi4kb, exon 3 of 12)",3,94974731,95006843,32113,1,Pi4kb-201,14568,Pi4kb-201;Pi4kb-207;Pi4kb-202;Pi4kb-203;Pi4kb-206,Pi4kb;Pi4kb;Pi4kb;Pi4kb;Pi4kb,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,107650,ENSMUSG00000038861,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
17542,cg03517030,0.0000499,0.0000677,0.73702167,0.461666601,gain,ns,0.000606106,0.00011497,5.27185273,0.000000254,pos,yes,0.091865651,0.033682375,2.727410124,0.00674708,pos,ns,2.17088411,0.000724379,0.001158334,0.625362644,0.532193155,pos,ns,0.396539854,Mtch2,Mtch2_Exon,2,90847309,90847358,90847309,90847310,50,+,CGGCCAGTCAGGTGCTCCTGGGCTCCGGTCTCACCATCCTGTCCCAGCCG,Promoter (<=1kb),2,90847155,90866810,19656,1,Mtch2-205,154,Mtch2-205;Mtch2-203;Mtch2-210;Mtch2-211;Mtch2-209;Mtch2-202;Mtch2-201;Mtch2-208,Mtch2;Mtch2;Mtch2;Mtch2;Mtch2;Mtch2;Mtch2;Mtch2,0;0;0;0;0;0;0;-4833,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,56428,ENSMUSG00000027282,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
21215,cg08666298,-0.0000728,0.0000107,-6.805580714,5.21E-11,loss,yes,-0.0000958,0.0000182,-5.270138134,0.000000256,neg,yes,0.001902124,0.005323839,0.357284361,0.721122042,pos,ns,0.14199123,-0.000478883,0.000183086,-2.615614558,0.009342491,neg,ns,0.635890647,Ddx5,Ddx5_threeUTR,11,106783279,106783328,106783327,106783328,50,-,CCAGGATTCACTTGAGAATGTGTCTCTCTCTGGCAGGTCTCGACATGACG,3' UTR,11,106780355,106788532,8178,2,Ddx5-201,5204,Ddx5-201;Ddx5-208;Ddx5-205;Ddx5-207;Ddx5-203;Ddx5-202;Ddx5-209;Ddx5-206;Ddx5-204;Polg2-201;Polg2-203;Polg2-206;Polg2-204;Polg2-202,Ddx5;Ddx5;Ddx5;Ddx5;Ddx5;Ddx5;Ddx5;Ddx5;Ddx5;Polg2;Polg2;Polg2;Polg2;Polg2,0;0;0;0;0;0;2722;0;0;-3764;-3742;-3806;-3806;-3777,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,5,6,13207,ENSMUSG00000020719,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16647,cg11831565,-0.000014,0.00000519,-2.690985137,0.007510605,loss,ns,-0.0000464,0.00000881,-5.267898484,0.000000259,neg,yes,0.002197418,0.002582203,0.850985897,0.395434027,pos,ns,0.402925963,-0.000354498,0.0000888,-3.992019744,0.0000818,neg,ns,0.805683892,Erg28,Erg28_Exon,12,85819503,85819552,85819551,85819552,50,+,CAGAGGCAGCGAATCACTGATGAGAGCAGCGTCCAGATCCCAAAGGTCCG,"Exon (Erg28-201/Erg28, exon 3 of 5)",12,85815448,85824522,9075,2,Erg28-201,4970,Erg28-201;Erg28-203;Erg28-202;Erg28-205;Erg28-204,Erg28;Erg28;Erg28;Erg28;Erg28,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,58520,ENSMUSG00000021252,conserved gene and region,12,85819414,85819552,139,*,139,10,0.575539568,0.869293308,0.071942446,0.00000141,CpGisland,TRUE,NA,NRS
11353,cg03058520,0.0000182,0.0000098,1.852968452,0.06483705,gain,ns,-0.0000877,0.0000166,-5.267538912,0.000000259,neg,yes,0.030975096,0.004877841,6.350164653,7.64E-10,pos,ns,9.116638877,-0.001139984,0.000167749,-6.795792253,5.53E-11,neg,yes,0.865764576,Clk3,Clk3_Exon,9,57758692,57758741,57758692,57758693,50,-,CGGCTGCTGCGCTTACTGCTCTGTTGGCTTCTCTGCATGCACCGCCCCCC,"Exon (Clk3-207/Clk3, exon 3 of 12)",9,57750624,57765103,14480,2,Clk3-207,6362,Clk3-207;Clk3-201;Clk3-205;Clk3-203;Clk3-206;Clk3-209;Clk3-208;Clk3-204,Clk3;Clk3;Clk3;Clk3;Clk3;Clk3;Clk3;Clk3,0;0;0;0;-3371;0;5567;6112,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,14,102414,ENSMUSG00000032316,conserved gene and region,9,57758611,57758779,169,*,169,14,0.615384615,0.908602151,0.082840237,7.36E-10,CpGisland,TRUE,U12,Tr-I
17059,cg02429698,-0.0000155,0.0000131,-1.185781574,0.236616662,loss,ns,0.000117318,0.0000223,5.267096447,0.00000026,pos,yes,0.0135672,0.006525429,2.079127879,0.038427465,pos,ns,1.41535826,0.000224808,0.000224409,1.001778707,0.317231789,pos,ns,0.777752551,Il1rapl1,Il1rapl1_Promoter,X,88120152,88120201,88120200,88120201,50,-,AATGCCCCAAATGAAACACTGTGTACATAAGCGATGCAAATGCATCCCCG,Promoter (4-5kb),20,86740870,88115645,1374776,2,Il1rapl1-203,-4556,Il1rapl1-203;Il1rapl1-202,Il1rapl1;Il1rapl1,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,6,18,331461,ENSMUSG00000052372,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15438,cg20150985,0.0000163,0.00000379,4.286755636,0.0000242,gain,ns,-0.0000339,0.00000644,-5.263970079,0.000000264,neg,yes,-0.001010547,0.001887742,-0.535320516,0.592812049,neg,ns,0.227082978,0.0000169,0.0000649,0.260325548,0.794785494,pos,ns,0.892797364,Tnrc6b,Tnrc6b_Exon,15,80890219,80890268,80890219,80890220,50,+,CGTCAGCCTTGGAGCAATCGGCACAGGGCTCAACCCCCAAAACTTCGCTG,"Exon (Tnrc6b-205/Tnrc6b, exon 2 of 3)",15,80711313,80941085,229773,1,Tnrc6b-201,178906,Tnrc6b-201;Tnrc6b-207;Tnrc6b-208;Tnrc6b-205,Tnrc6b;Tnrc6b;Tnrc6b;Tnrc6b,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,20,24,213988,ENSMUSG00000047888,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21683,cg12378720,0.0000266,0.0000104,2.557556058,0.011016676,gain,ns,0.0000928,0.0000177,5.24801745,0.000000286,pos,yes,0.02294193,0.005181259,4.42786772,0.0000132,pos,ns,4.879224399,-0.000475174,0.000178183,-2.666771481,0.008060367,neg,ns,0.237808611,Brwd3,Brwd3_Intron,X,108832808,108832857,108832856,108832857,50,+,CAGAAACCAGTTTTCTTCCACTAATCCGGAACTCCGGGCTGTTACCAACG,"Intron (Brwd3-205/Brwd3, intron 4 of 40)",20,108737016,108834348,97333,2,Brwd3-205,1491,Brwd3-205;Brwd3-201;Brwd3-204;Brwd3-203;Brwd3-202,Brwd3;Brwd3;Brwd3;Brwd3;Brwd3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,5,382236,ENSMUSG00000063663,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
25156,cg05933505,-0.0000182,0.0000115,-1.579944733,0.115139294,loss,ns,-0.000102421,0.0000195,-5.246825697,0.000000287,neg,yes,0.042231131,0.005718883,7.384507092,1.42E-12,pos,yes,11.84689865,-0.001016276,0.000196672,-5.167365276,0.000000426,neg,yes,0.418629545,Wasf2,Wasf2_Exon,4,133176484,133176533,133176532,133176533,50,-,TGCCGTTAGTAACGAGGAACATCGAGCCAAGGCACCTGTGCCGTCAGACG,"Exon (Wasf2-201/Wasf2, exon 2 of 9)",4,133130505,133199756,69252,1,Wasf2-201,45979,Wasf2-201;Wasf2-206;Wasf2-204;Wasf2-203;Wasf2-202,Wasf2;Wasf2;Wasf2;Wasf2;Wasf2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,5,242687,ENSMUSG00000028868,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9139,cg07105870,0.000101247,0.0000113,8.944923531,3.46E-17,gain,yes,-0.000100506,0.0000192,-5.226705749,0.000000318,neg,yes,0.001494102,0.005633524,0.265216308,0.791019104,pos,ns,0.101813028,-0.000318726,0.000193736,-1.645153453,0.100951716,neg,ns,0.70980646,Samd4,Samd4_Exon,14,47083524,47083573,47083572,47083573,50,+,TTGTTGTCATGGAAACAGCAGGTGCAGAAGCTCTTTCGGTCTTTCCCTCG,"Exon (Samd4-201/Samd4, exon 9 of 13)",14,46882854,47103150,220297,1,Samd4-201,200670,Samd4-201;Samd4-211;Samd4-202;Samd4-206;Samd4-203;Samd4-204;Samd4-210;Samd4-205,Samd4;Samd4;Samd4;Samd4;Samd4;Samd4;Samd4;Samd4,0;0;0;0;0;0;0;-3562,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,11,16,74480,ENSMUSG00000021838,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24494,cg06385312,0.0000158,0.0000219,0.722284524,0.470664065,gain,ns,0.000194623,0.0000373,5.22106601,0.000000327,pos,yes,0.011807939,0.01092077,1.081236878,0.280432157,pos,ns,0.552172188,0.000200198,0.000375564,0.533057802,0.594375497,pos,ns,0.621845733,Kcna1,Kcna1_Exon,6,126642194,126642243,126642194,126642195,50,+,CGATCTTGCCTCCAATTGTCACAGGGTACATGTCACCGTATCCTACAGTG,"Exon (Kcna1-201/Kcna1, exon 2 of 2)",6,126640397,126644796,4400,2,Kcna1-201,2553,Kcna1-201;Kcna1-202;Kcna1-203,Kcna1;Kcna1;Kcna1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,12,16485,ENSMUSG00000047976,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
19702,cg09824710,0.0000422,0.0000151,2.798884565,0.005449247,gain,ns,0.000133698,0.0000256,5.216806605,0.000000334,pos,yes,0.032922666,0.007508214,4.38488666,0.0000159,pos,ns,4.798186404,-0.000771795,0.000258207,-2.989058436,0.003022261,neg,ns,0.39253766,Dlg3,Dlg3_fiveUTR,X,100768058,100768107,100768058,100768059,50,+,CGGGGGGCAGTGCCATGCACAAGCACCAGCACTGCTGTAAGTGCCCTGAG,Promoter (<=1kb),20,100767722,100818406,50685,1,Dlg3-201,336,Dlg3-201;Dlg3-204;Dlg3-202;Dlg3-206,Dlg3;Dlg3;Dlg3;Dlg3,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,11,53310,ENSMUSG00000000881,conserved gene and region,X,100767770,100768059,290,*,290,29,0.751724138,0.710784314,0.1,2.23E-22,CpGisland,TRUE,U3,Pr-B
6456,cg21089733,-0.0000313,0.0000131,-2.384224596,0.017716455,loss,ns,0.00011614,0.0000223,5.214828988,0.000000337,pos,yes,0.013937106,0.006524658,2.136066845,0.033457047,pos,ns,1.47551239,-0.000235738,0.000224382,-1.050607929,0.294257003,neg,ns,0.554901345,Zfp536,Zfp536_Intron,7,37342999,37343048,37343047,37343048,50,-,ACAGGATGGAACTAAAAGCCATCTATCTCTCTTATACCACATGATCATCG,"Intron (Zfp536-211/Zfp536, intron 3 of 3)",7,37318024,37568390,250367,2,Zfp536-211,225342,Zfp536-211,Zfp536,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,73,112,243937,ENSMUSG00000043456,conserved gene and region,7,37343007,37343158,152,*,152,10,0.546052632,0.904761905,0.065789474,0.00000314,CpGisland,TRUE,NA,NRS
6746,cg21736204,-0.00000902,0.00000914,-0.985998161,0.324902947,loss,ns,-0.0000806,0.0000155,-5.190215372,0.000000381,neg,yes,0.010544017,0.004551,2.316857099,0.021163009,pos,ns,1.674422592,-0.000542749,0.000156509,-3.467856565,0.000598811,neg,ns,0.635488288,Dennd1a,Dennd1a_Intergenic_upstream,2,38301862,38301911,38301910,38301911,50,-,TTCACCTCACCTGGTTTGTTTACCCAAACAAGCTGCTCATTAACAACACG,Distal Intergenic,2,37816916,38287390,470475,2,Dennd1a-207,-14521,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,46,227801,ENSMUSG00000035392,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5672,cg21333598,0.00000484,0.00000732,0.661091391,0.509044718,gain,ns,-0.0000645,0.0000124,-5.188614493,0.000000384,neg,yes,0.02089188,0.003643423,5.734135447,2.33E-08,pos,ns,7.633279829,-0.000631407,0.000125297,-5.039279391,0.000000796,neg,yes,0.830209302,Mapkap1,Mapkap1_Intron,2,34535049,34535098,34535049,34535050,50,-,CGATAAGAGCTGTAAAAAATGGCAGAGGAGAGCAATTGAATGGAGCAATG,"Intron (Mapkap1-204/Mapkap1, intron 6 of 10)",2,34406862,34623475,216614,1,Mapkap1-204,128187,Mapkap1-204;Mapkap1-202;Mapkap1-201;Mapkap1-209;Mapkap1-203;Mapkap1-207,Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,59,227743,ENSMUSG00000038696,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5898,cg27278067,0.000148186,0.0000155,9.576976703,3.35E-19,gain,yes,-0.000136131,0.0000263,-5.17865987,0.000000403,neg,yes,0.049754403,0.007701168,6.460631064,4.03E-10,pos,ns,9.394306754,-0.002040117,0.000264843,-7.70313373,1.80E-13,neg,yes,0.531241596,Rab14,Rab14_threeUTR,2,35182268,35182317,35182316,35182317,50,-,CACTAGCAGCCACAGCCTTCTCTCTGGGGTTGGGGTTCACTGGTTAGCCG,3' UTR,2,35180205,35201120,20916,2,Rab14-201,18803,Cntrl-212;Cntrl-202;Cntrl-203;Cntrl-206;Cntrl-210;Rab14-201;Rab14-202;Rab14-204;Rab14-213;Rab14-212;Rab14-205;Rab14-211;Rab14-208,Cntrl;Cntrl;Cntrl;Cntrl;Cntrl;Rab14;Rab14;Rab14;Rab14;Rab14;Rab14;Rab14;Rab14,72776;72776;72649;50034;7020;0;0;0;0;7643;1831;18655;10346,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,3,68365,ENSMUSG00000026878,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11462,cg12583945,-0.0000551,0.0000107,-5.144929637,0.000000476,loss,yes,-0.0000942,0.0000182,-5.178556697,0.000000403,neg,yes,0.027410929,0.005326433,5.146207957,0.000000473,pos,ns,6.325408686,-0.001402696,0.000183176,-7.65765609,2.43E-13,neg,yes,0.703843269,Hnrnpk,Hnrnpk_fiveUTR,13,58397873,58397922,58397873,58397874,50,-,CGTTTGGCAACGAGCACATTTTTGGGCATAGCCAACCAGGGTTTTCACAT,5' UTR,13,58391142,58403343,12202,2,Hnrnpk-202,5421,Hnrnpk-202;Hnrnpk-224;Hnrnpk-221;Hnrnpk-232;Hnrnpk-216;Hnrnpk-201;Hnrnpk-205;Hnrnpk-217;Hnrnpk-206;Hnrnpk-209;Hnrnpk-213;Hnrnpk-227;Hnrnpk-234;Hnrnpk-233;Hnrnpk-228;Hnrnpk-214;Hnrnpk-215;Hnrnpk-211;Hnrnpk-208;Hnrnpk-212;Hnrnpk-231;Hnrnpk-230;Hnrnpk-203;Hnrnpk-218;Hnrnpk-226;Hnrnpk-207;Hnrnpk-219;Hnrnpk-225;Hnrnpk-229;Hnrnpk-223;Hnrnpk-220;Hnrnpk-210;Hnrnpk-204;Hnrnpk-222;Rmi1-205;Rmi1-201;Rmi1-204,Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Rmi1;Rmi1;Rmi1,0;0;0;0;0;0;0;-4005;-3088;-3898;-2675;-3789;-3984;-3703;-3177;0;-2153;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;4580;4133;-4326;-4341;-4778,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,10,19,15387,ENSMUSG00000021546,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24491,cg14726883,0.0000186,0.0000122,1.521052543,0.129265965,gain,ns,0.000107306,0.0000208,5.17013424,0.00000042,pos,yes,0.008323205,0.006080513,1.36883268,0.172042623,pos,ns,0.764363945,-0.00012207,0.000209108,-0.583766656,0.559801817,neg,ns,0.536671533,Kcna1,Kcna1_Exon,6,126642106,126642155,126642106,126642107,50,-,CGGTGGTAGAAATAGTTGAAATTGGACACAATGACAGGTACGGGCAGGGC,"Exon (Kcna1-201/Kcna1, exon 2 of 2)",6,126640397,126644796,4400,2,Kcna1-201,2641,Kcna1-201;Kcna1-202;Kcna1-203,Kcna1;Kcna1;Kcna1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,12,16485,ENSMUSG00000047976,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
21333,cg05358536,0.0000624,0.0000123,5.089996594,0.000000622,gain,yes,-0.000107658,0.0000208,-5.169091202,0.000000422,neg,yes,0.042286654,0.006101692,6.930315514,2.44E-11,pos,yes,10.61275934,-0.001233041,0.000209837,-5.876195676,1.08E-08,neg,yes,0.70343752,Nfat5,Nfat5_threeUTR,8,107372877,107372926,107372877,107372878,50,+,CGTTTTCAGTAGTACAGGCTTCTTGCCGATATGAAGGGAACTTTTCAGAA,3' UTR,8,107293470,107379516,86047,1,Nfat5-214,79407,Nfat5-213;Nfat5-214;Nfat5-206;Nfat5-211;Nfat5-203;Nfat5-201;Nfat5-202;Nfat5-207;Nfat5-208,Nfat5;Nfat5;Nfat5;Nfat5;Nfat5;Nfat5;Nfat5;Nfat5;Nfat5,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,13,17,54446,ENSMUSG00000003847,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17997,cg06453041,-0.00000177,0.00001,-0.175968613,0.860433494,loss,ns,0.0000881,0.000017,5.169117048,0.000000422,pos,yes,0.020713764,0.004992855,4.148681521,0.0000432,pos,ns,4.364176737,-0.000567682,0.000171704,-3.306167153,0.001056873,neg,ns,0.18262981,Arx,Arx_Intron,X,93292581,93292630,93292581,93292582,50,-,CGAGTTAGGAGCTGAGTGAATCACTTTACAGTCAAAATCAAGCGCTGATA,"Intron (Arx-201/Arx, intron 3 of 4)",20,93286496,93298357,11862,1,Arx-201,6085,Arx-203;Arx-201;Arx-202,Arx;Arx;Arx,6136;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,32,11878,ENSMUSG00000035277,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
9288,cg05894849,0.0000547,0.000012,4.55684481,0.00000748,gain,ns,-0.000105257,0.0000204,-5.162358157,0.000000437,neg,yes,0.028359174,0.005973373,4.747598107,0.00000315,pos,ns,5.501719623,-0.001424827,0.000205424,-6.93603773,2.36E-11,neg,yes,0.73203733,Foxp4,Foxp4_Intron,17,47914934,47914983,47914982,47914983,50,+,CTTTTGAAATTAAATTACTCCCTAATTAGCATATCAAAGCCATTGATTCG,"Intron (Foxp4-204/Foxp4, intron 1 of 16)",17,47867133,47924645,57513,2,Foxp4-204,9662,Foxp4-204;Foxp4-203;Foxp4-201;Foxp4-202;Foxp4-207,Foxp4;Foxp4;Foxp4;Foxp4;Foxp4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,25,74123,ENSMUSG00000023991,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25625,cg02963783,-0.0000135,0.00000697,-1.930340042,0.05447667,loss,ns,-0.0000611,0.0000118,-5.159488828,0.000000443,neg,yes,0.002082477,0.003468546,0.600389088,0.548685615,pos,ns,0.260676425,-0.000683569,0.000119283,-5.730645193,2.37E-08,neg,yes,0.735313298,Epo,Epo_Exon,5,137525253,137525302,137525253,137525254,50,+,CGCTGGAAGCCAAAGAATTTGCCAAACAATTCCTGGAGCGGAGGGCCAAG,"Exon (Gigyf1-201/Gigyf1, exon 22 of 24)",5,137483020,137533242,50223,2,Epo-202,7940,Epo-202;Gigyf1-202;Gigyf1-201;Gnb2-201;Gnb2-213;Gnb2-209;Gnb2-203;Gnb2-204;Gnb2-202;Gnb2-212;Gnb2-214;Gnb2-215;Gnb2-208;Gnb2-205;Gnb2-210;Gnb2-211;Gnb2-206;Gnb2-207,Epo;Gigyf1;Gigyf1;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2,0;6705;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,9,13856,ENSMUSG00000029711,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22404,cg08587914,-0.0000123,0.0000108,-1.134981707,0.257259779,loss,ns,0.0000949,0.0000184,5.156422326,0.00000045,pos,yes,0.014418909,0.005393277,2.673496971,0.007904146,pos,ns,2.102145036,-0.000572095,0.000185474,-3.084499347,0.002222574,neg,ns,0.665836694,Gm11692,Gm11692_Intergenic_upstream,11,114300732,114300781,114300732,114300733,50,+,CGGGCTTATCTGTAAACTGACTGAATTCACACTGGGATGCTAAGAAAATA,Distal Intergenic,11,114357129,114358261,1133,1,Gm11692-201,-56348,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,634710,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23898,cg04855834,0.0000353,0.00000657,5.36944725,0.000000155,gain,yes,-0.0000575,0.0000112,-5.149085357,0.000000466,neg,yes,-0.00447245,0.003272141,-1.366826655,0.172670056,neg,ns,0.762782971,-0.0000382,0.000112529,-0.339542601,0.734430928,neg,ns,0.826050631,Csnk1d,Csnk1d_threeUTR,11,120963867,120963916,120963867,120963868,50,-,CGACAGACTGAAGACCACTGGAAGCCACCCGACCAGGAATCTGTCGGAGC,3' UTR,11,120958990,120991330,32341,2,Csnk1d-209,27414,Csnk1d-209;Csnk1d-202;Csnk1d-201;Csnk1d-203;Csnk1d-205;Csnk1d-204;Slc16a3-202;Slc16a3-208,Csnk1d;Csnk1d;Csnk1d;Csnk1d;Csnk1d;Csnk1d;Slc16a3;Slc16a3,0;0;0;0;0;4145;14800;14786,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,5,104318,ENSMUSG00000025162,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11392,cg23420041,0.0000411,0.0000149,2.761790761,0.006091466,gain,ns,0.000130335,0.0000253,5.149328963,0.000000466,pos,yes,0.022363971,0.007415302,3.015921848,0.002773959,pos,ns,2.556899892,-0.000117844,0.000255012,-0.462111082,0.644325809,neg,ns,0.382704354,Zic3,Zic3_Intergenic_upstream,X,57918813,57918862,57918813,57918814,50,+,CGTTGTCCCTTCTGTAGCTACATCTGCTCCGACCTATTAAGAAAAGTAAG,Distal Intergenic,20,58022700,58031448,8749,1,Zic3-204,-103838,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,17,22773,ENSMUSG00000067860,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
25723,cg08193095,-0.0000138,0.0000147,-0.937632042,0.349163454,loss,ns,0.000128815,0.000025,5.149056768,0.000000466,pos,yes,0.013883455,0.007329189,1.894268842,0.059119955,pos,ns,1.228265905,-0.000000352,0.00025205,-0.001394793,0.998888014,neg,ns,0.64652486,Lhx9,Lhx9_Exon,1,138828670,138828719,138828670,138828671,50,+,CGTCGGGATGTTTGGCTGTAATGCCCCAAGATTTGTTCTCCCTGAAAAAA,"Exon (Lhx9-201/Lhx9, exon 5 of 5)",1,138825186,138842457,17272,2,Lhx9-201,13738,Lhx9-201;Lhx9-203;Lhx9-205;Lhx9-202;Lhx9-204;Lhx9-206;Lhx9-207,Lhx9;Lhx9;Lhx9;Lhx9;Lhx9;Lhx9;Lhx9,0;0;0;0;0;4940;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,12,16876,ENSMUSG00000019230,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19843,cg05901294,0.0000124,0.00000784,1.580972382,0.114904079,gain,ns,0.0000686,0.0000133,5.147892446,0.000000469,pos,yes,0.01112489,0.003901463,2.851466193,0.004643887,pos,ns,2.333118348,-0.000262441,0.000134171,-1.956020087,0.051360609,neg,ns,0.738105866,Nlgn3,Nlgn3_Exon,X,101303094,101303143,101303094,101303095,50,-,CGCCCGAAAGCCCAACAAGAAAATTTGTAGGAAAGGAGGTAGGTAGCGAG,"Exon (Gm21986-201/Gm21986-201, exon 6 of 11)",20,101299168,101325963,26796,1,Nlgn3-202,3926,Nlgn3-202;Nlgn3-203;Nlgn3-206;Nlgn3-201;Nlgn3-205,Nlgn3;Nlgn3;Nlgn3;Nlgn3;Nlgn3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,16,245537,ENSMUSG00000031302,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4525,cg24874499,0.000211229,0.00000977,21.62799137,6.99E-64,gain,yes,-0.0000854,0.0000166,-5.145409118,0.000000475,neg,yes,0.012135872,0.004860859,2.496651798,0.013056036,pos,ns,1.884188677,-0.000282689,0.000167165,-1.691082166,0.091826157,neg,ns,0.850791778,Med27,Med27_Intron,2,29452169,29452218,29452169,29452170,50,+,CGGTTGCTATTATCCCTGAACACTGTAAAAATGAACTTTGAAACAGTTGG,"Intron (Med27-201/Med27, intron 3 of 7)",2,29346819,29524793,177975,1,Med27-201,105350,Med27-201;Med27-202;Med27-208;Med27-207;Med27-209;Med27-206;Med27-205;Med27-203,Med27;Med27;Med27;Med27;Med27;Med27;Med27;Med27,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,2,68975,ENSMUSG00000026799,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18884,cg27359924,-0.0000111,0.0000187,-0.591949759,0.554315692,loss,ns,0.000163406,0.0000318,5.143750367,0.000000478,pos,yes,0.035886713,0.00930689,3.855929383,0.000140209,pos,ns,3.853222963,-0.000287571,0.000320063,-0.898481227,0.369626366,neg,ns,0.546999089,Rps18-ps6,Rps18-ps6_Intron,13,97824607,97824656,97824655,97824656,50,+,CTGCCATTTCTCATGACAAACTTTAATGCTTTAATTAGGAGGCATCTGCG,"Intron (Gm41031-201/Gm41031-201, intron 1 of 2)",13,97760072,97760632,561,2,Rps18-ps6-201,-63975,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2643,cg12580399,0.0000758,0.00000465,16.29926354,1.44E-43,gain,yes,-0.0000406,0.0000079,-5.137140056,0.000000494,neg,yes,-0.006615674,0.002313086,-2.860107238,0.004522416,neg,ns,2.344629487,0.000165855,0.0000795,2.084998336,0.037887409,pos,ns,0.823792889,Arhgap21,Arhgap21_Exon,2,20854159,20854208,20854207,20854208,50,+,GTTCCAGCTGTCCATCAGGGACATCACAGAATCCACTAGTGACATTACCG,"Exon (Arhgap21-217/Arhgap21, exon 18 of 20)",2,20847919,20967721,119803,2,Arhgap21-210,113513,Arhgap21-210;Arhgap21-201;Arhgap21-213;Arhgap21-208;Arhgap21-205;Arhgap21-217;Arhgap21-203;Arhgap21-209;Arhgap21-206;Arhgap21-218;Arhgap21-216,Arhgap21;Arhgap21;Arhgap21;Arhgap21;Arhgap21;Arhgap21;Arhgap21;Arhgap21;Arhgap21;Arhgap21;Arhgap21,0;0;0;0;-912;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,4,71435,ENSMUSG00000036591,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5083,cg00560327,-0.0000048,0.00000855,-0.561065461,0.575158237,loss,ns,-0.0000745,0.0000145,-5.128354589,0.000000516,neg,yes,0.007499926,0.004254739,1.762722766,0.078932588,pos,ns,1.102743658,-0.000457067,0.00014632,-3.123748747,0.001954334,neg,ns,0.84955712,Brd4,Brd4_Exon,17,32224972,32225021,32225020,32225021,50,-,CATCTGTGGTCTGAACTGTAAACAAATGATCTGGCTTCATGGCACAGCCG,"Exon (Brd4-204/Brd4, exon 5 of 11)",17,32196274,32284097,87824,2,Brd4-201,59076,Brd4-201;Brd4-203;Brd4-202;Brd4-212;Brd4-205;Brd4-204;Brd4-210;Brd4-211,Brd4;Brd4;Brd4;Brd4;Brd4;Brd4;Brd4;Brd4,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,5,57261,ENSMUSG00000024002,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21677,cg05203258,0.000277346,0.0000158,17.55752114,2.16E-48,gain,yes,-0.000137568,0.0000268,-5.126234435,0.000000521,neg,yes,-0.018397584,0.007862053,-2.340048284,0.01991545,neg,ns,1.700809885,0.000744363,0.000270375,2.753072074,0.006252029,pos,ns,0.645754164,Zfhx3,Zfhx3_Intron,8,108823057,108823106,108823057,108823058,50,+,CGAATTATGTCATGTGGTATCCCCTTTGATTTCGACATGCCTCAGTTTGT,"Intron (Zfhx3-204/Zfhx3, intron 9 of 15)",8,107942644,108961630,1018987,1,Zfhx3-204,880413,Zfhx3-204;Zfhx3-201,Zfhx3;Zfhx3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,114,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
26281,cg24856637,0.0000173,0.0000129,1.340270678,0.18113882,gain,ns,0.000112538,0.000022,5.121518073,0.000000533,pos,yes,0.015292287,0.006437522,2.375492772,0.018133331,pos,ns,1.741522422,-0.000256352,0.000221386,-1.157943267,0.247778527,neg,ns,0.3303445,Insm1,Insm1_threeUTR,2,146224311,146224360,146224311,146224312,50,-,CGATTAGCTTTATTATGGCTTGTGAACTGCTGGAGTCTGGCTTTACCTTT,3' UTR,2,146221921,146225020,3100,1,Insm1-201,2390,Insm1-201,Insm1,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,3,53626,ENSMUSG00000068154,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
18051,cg12645831,-0.00000668,0.00000259,-2.577560867,0.010411766,loss,ns,0.0000225,0.0000044,5.116148504,0.000000548,pos,yes,0.006733635,0.001289727,5.220977594,0.000000327,pos,ns,6.485673395,-0.000148778,0.0000444,-3.354356488,0.000894287,neg,ns,0.936983627,Pola1,Pola1_Intron,X,93409561,93409610,93409609,93409610,50,+,ACCGATTAGGCGATAAATGGACTCGCTTTGAATTGAAGTGAATGCACCCG,"Intron (Pola1-201/Pola1, intron 35 of 36)",20,93304767,93632155,327389,2,Pola1-201,222545,Pola1-201,Pola1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,59,62,18968,ENSMUSG00000006678,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14816,cg01036197,0.0000143,0.0000075,1.908191604,0.05729004,gain,ns,0.0000652,0.0000127,5.115491193,0.000000549,pos,yes,0.017546067,0.003733655,4.699434473,0.00000393,pos,ns,5.40574728,-0.000450524,0.0001284,-3.50874925,0.000516884,neg,ns,0.85586462,Fam172a,Fam172a_Intron,13,77868314,77868363,77868314,77868315,50,-,CGACTTTATTATTGAGTATAACAGCTGAAGTGTTCATATAATTATTTGTT,"Intron (Fam172a-203/Fam172a, intron 6 of 10)",13,77708690,78163655,454966,1,Fam172a-203,159624,Fam172a-203;Fam172a-201;Fam172a-202;Fam172a-209;Fam172a-205;Fam172a-207;Fam172a-208,Fam172a;Fam172a;Fam172a;Fam172a;Fam172a;Fam172a;Fam172a,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,24,68675,ENSMUSG00000064138,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4733,cg17000486,0.0000313,0.0000074,4.233937461,0.0000303,gain,ns,-0.0000642,0.0000126,-5.110876951,0.000000562,neg,yes,0.031117326,0.003682698,8.449601158,1.15E-15,pos,yes,14.93828326,-0.000763607,0.000126648,-6.02937892,4.68E-09,neg,yes,0.829360866,Sh3glb2,Sh3glb2_Exon,2,30348567,30348616,30348615,30348616,50,-,GGCCGAGAGAATGTAATTACGAGGTCTAGTCTCCTGAAAGTCAGGCACCG,"Exon (Sh3glb2-202/Sh3glb2, exon 6 of 12)",2,30344809,30359240,14432,2,Sh3glb2-202,10624,Nup188-201;Nup188-203;Sh3glb2-202;Sh3glb2-201;Sh3glb2-203;Sh3glb2-214;Sh3glb2-204;Sh3glb2-213;Sh3glb2-209;Sh3glb2-205;Sh3glb2-211;Sh3glb2-210;Sh3glb2-207;Sh3glb2-208;Sh3glb2-212;Sh3glb2-206,Nup188;Nup188;Sh3glb2;Sh3glb2;Sh3glb2;Sh3glb2;Sh3glb2;Sh3glb2;Sh3glb2;Sh3glb2;Sh3glb2;Sh3glb2;Sh3glb2;Sh3glb2;Sh3glb2;Sh3glb2,62170;5627;0;0;0;0;0;0;-2466;0;-911;-980;0;0;10629;10644,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,227700,ENSMUSG00000026860,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5984,cg18897227,0.0000138,0.0000124,1.110115098,0.267809784,gain,ns,-0.000107624,0.0000211,-5.102193486,0.000000586,neg,yes,-0.011821933,0.006179716,-1.913022006,0.056666328,neg,ns,1.246674932,-0.000512929,0.00021252,-2.41355689,0.016377214,neg,ns,0.680946,Ddr1,Ddr1_Exon,17,35686492,35686541,35686540,35686541,50,+,GTGGGTTTGGCCCAGGCGGGTGTGGGGGGGCCCGGGCCTCGAGGGGGACG,"Exon (Ddr1-204/Ddr1, exon 12 of 18)",17,35681567,35700610,19044,2,Ddr1-204,14069,Ddr1-204;Ddr1-203;Ddr1-212;Ddr1-202;Ddr1-201;Ddr1-211;Ddr1-210;Ddr1-209;Ddr1-205;Ddr1-208;Ddr1-207,Ddr1;Ddr1;Ddr1;Ddr1;Ddr1;Ddr1;Ddr1;Ddr1;Ddr1;Ddr1;Ddr1,0;0;0;0;0;0;0;17436;18080;11430;15505,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,12305,ENSMUSG00000003534,conserved gene and region,17,35686508,35686619,112,*,112,10,0.714285714,0.903954802,0.089285714,0.000000188,CpGisland,TRUE,U11,Tr-P
3371,cg27284917,0.00000821,0.0000116,0.705382171,0.481102119,gain,ns,0.000100798,0.0000198,5.100791774,0.00000059,pos,yes,0.015918057,0.005789378,2.749528199,0.006318381,pos,ns,2.199394215,-0.000385857,0.000199096,-1.938042056,0.053525876,neg,ns,0.58520158,Apba1,Apba1_Exon,19,23893933,23893982,23893933,23893934,50,+,CGACGAGCCCAAAGAGCCCATCTGGGTCATGCGCCAGGACATTAGCCCCA,"Exon (Apba1-201/Apba1, exon 2 of 13)",19,23758887,23949596,190710,1,Apba1-201,135046,Apba1-201,Apba1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,319924,ENSMUSG00000024897,conserved gene and region,19,23893916,23894039,124,*,124,10,0.612903226,0.859320859,0.080645161,0.000000493,CpGisland,TRUE,U13,Hc-P
4255,cg19302474,0.0000478,0.0000109,4.379558881,0.0000163,gain,ns,0.0000945,0.0000185,5.097558801,0.0000006,pos,yes,0.018201943,0.005433098,3.350196167,0.000907347,pos,ns,3.042226693,-0.000152981,0.000186844,-0.818762507,0.41355088,neg,ns,0.662202591,Tpm3-rs2,Tpm3-rs2_Intergenic_downstream,4,27988097,27988146,27988097,27988098,50,+,CGTTGTGTAAAGAAATTGAAATGGAATCCTACTTGACCCAGCAGGATGGG,Distal Intergenic,4,27996583,27996905,323,2,Tpm3-rs2-201,8759,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,3,625912,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16807,cg09074860,0.000286957,0.0000134,21.45465196,3.13E-63,gain,yes,-0.00011572,0.0000227,-5.092755851,0.000000614,neg,yes,0.001119945,0.006656899,0.168238277,0.866505538,pos,ns,0.062228658,0.000220315,0.00022893,0.962365881,0.336615907,pos,ns,0.618311355,Lrba,Lrba_Intron,3,86557111,86557160,86557111,86557112,50,+,CGTTAGGTTGTCCTGAAAGCATCAGGCAGTCACAGCCCCTTTCATGTAAG,"Intron (Lrba-202/Lrba, intron 40 of 50)",3,86224680,86746712,522033,1,Lrba-202,332431,Lrba-202;Lrba-204;Lrba-201;Lrba-203;Lrba-205;Lrba-206,Lrba;Lrba;Lrba;Lrba;Lrba;Lrba,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,45,80877,ENSMUSG00000028080,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
103,cg24468708,0.000100843,0.0000106,9.549467439,4.12E-19,gain,yes,-0.0000913,0.0000179,-5.091078844,0.000000619,neg,yes,-0.02552442,0.005255847,-4.856385574,0.0000019,neg,ns,5.721334393,0.000489396,0.000180748,2.707612651,0.007152897,pos,ns,0.709589494,Bet1,Bet1_Intergenic_upstream,6,4140803,4140852,4140851,4140852,50,+,AGTCATGTCAATCAAAAAGTCATTTCCTTTTGTTTGCGTTTTAACATTCG,Distal Intergenic,6,4080318,4086972,6655,2,Bet1-203,-53831,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,12068,ENSMUSG00000032757,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18406,cg11338199,-0.0000333,0.0000136,-2.45084639,0.014804182,loss,ns,0.000117311,0.0000231,5.076331056,0.000000665,pos,yes,0.018395416,0.006770273,2.717086139,0.006956036,pos,ns,2.157638195,-0.000431933,0.000232829,-1.855151905,0.064523725,neg,ns,0.402943726,Arhgef9,Arhgef9_fiveUTR,X,95165866,95165915,95165914,95165915,50,+,CAGGGTCATGGTGCAATGCAGAACACTGTAGTGTTCCAGGTGGGGGGCCG,Promoter (<=1kb),20,95048935,95166361,117427,2,Arhgef9-202,446,Arhgef9-202;Arhgef9-217;Arhgef9-205;Arhgef9-207;Arhgef9-210;Arhgef9-203;Arhgef9-209;Arhgef9-206;Arhgef9-208;Arhgef9-204;Arhgef9-216;Arhgef9-219;Arhgef9-201;Arhgef9-218;Arhgef9-220;Arhgef9-213;Arhgef9-214,Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,8,14,236915,ENSMUSG00000025656,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23703,cg25118146,0.0000233,0.00000505,4.610003384,0.00000589,gain,ns,-0.0000436,0.00000858,-5.073903401,0.000000673,neg,yes,0.004264147,0.002514654,1.695719201,0.090943074,pos,ns,1.041230369,-0.0000354,0.0000865,-0.409790056,0.682242989,neg,ns,0.625671219,Wnk1,Wnk1_Exon,6,119952906,119952955,119952906,119952907,50,+,CGTTGGAAGAGGGAGCAATATTTGAATCTCCTGGGTACTGTGGTGGCAGT,"Exon (Wnk1-202/Wnk1, exon 12 of 28)",6,119923969,120038672,114704,2,Wnk1-202,85717,Wnk1-202;Wnk1-203;Wnk1-223;Wnk1-204;Wnk1-224;Wnk1-222;Wnk1-219;Wnk1-226;Wnk1-215;Wnk1-221;Wnk1-207;Wnk1-214;Wnk1-211;Wnk1-206;Wnk1-210,Wnk1;Wnk1;Wnk1;Wnk1;Wnk1;Wnk1;Wnk1;Wnk1;Wnk1;Wnk1;Wnk1;Wnk1;Wnk1;Wnk1;Wnk1,0;0;0;0;0;-4480;-4801;-2752;-908;0;0;0;0;0;9975,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,9,232341,ENSMUSG00000045962,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11813,cg14754937,0.00000593,0.0000202,0.293915759,0.769018964,gain,ns,0.000173781,0.0000343,5.072804497,0.000000676,pos,yes,0.034256405,0.010036235,3.413272554,0.000727177,pos,ns,3.138359844,-0.000787441,0.000345145,-2.28147718,0.023198034,neg,ns,0.52595218,Sox3,Sox3_Promoter,X,60899625,60899674,60899625,60899626,50,-,CGACGTGGGCCTTTTGATCAGAAAAGAAATTAGCTCTAAAAAACAGACAA,Promoter (6-7kb),20,60891366,60893430,2065,2,Sox3-201,-6244,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,1,20675,ENSMUSG00000045179,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27245,cg08415412,0.0000158,0.0000102,1.542136372,0.124060606,gain,ns,0.0000883,0.0000174,5.070242475,0.000000685,pos,yes,0.02567302,0.005099682,5.034238904,0.000000815,pos,ns,6.088784186,-0.000645835,0.000175378,-3.682538861,0.000272357,neg,ns,0.521801179,Nhs,Nhs_Exon,X,161908711,161908760,161908759,161908760,50,-,TGGATGCTGCCTTCTGATGAGGAAGTCGACTGGGGAGGTCTCTGCGCACG,"Exon (Gm15202-201/Gm15202-201, exon 2 of 2)",20,161833296,162159730,326435,2,Nhs-202,250970,Nhs-202;Nhs-201,Nhs;Nhs,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,12,195727,ENSMUSG00000059493,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
12475,cg03819788,-0.000420662,0.0000379,-11.09783024,2.55E-24,loss,yes,0.000326259,0.0000644,5.06650188,0.000000697,pos,yes,0.088702942,0.018865643,4.701824544,0.00000389,pos,ns,5.410491527,-0.004765552,0.000648788,-7.345316549,1.83E-12,neg,yes,0.605204643,Gm13577,Gm13577_Intergenic_downstream,2,64462496,64462545,64462544,64462545,50,+,CTGCTTCACTGCAAAGCCACTCTTAAAACATAATTCCTTAATGAAGTCCG,Distal Intergenic,2,64474745,64474949,205,2,Gm13577-201,12404,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,17,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15681,cg07340783,-0.0000102,0.000017,-0.600604705,0.548542145,loss,ns,0.000146176,0.0000289,5.059841557,0.00000072,pos,yes,0.024288248,0.008463631,2.869719665,0.004390693,pos,ns,2.357466881,-0.000310561,0.000291064,-1.066987606,0.286807668,neg,ns,0.344668516,Gm14741,Gm14741_Intergenic_upstream,X,82814768,82814817,82814768,82814769,50,-,CGACGTTGTAGCAGCTGCATAATAAATGACTGAAAGAATCATGTTAGGCA,Distal Intergenic,20,82757430,82758438,1009,2,Gm14741-201,-56379,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,11,100415954,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27238,cg07998710,0.0000316,0.0000146,2.174322892,0.030436976,gain,ns,0.000125059,0.0000247,5.059089406,0.000000723,pos,yes,0.020203321,0.00724205,2.78972422,0.005601861,pos,ns,2.251667671,-0.0000389,0.000249053,-0.156387103,0.875829697,neg,ns,0.440244522,Rai2,Rai2_Intron,X,161718760,161718809,161718808,161718809,50,-,ATTTTGCTGAGGATAAGTGACATCAACAGAATGATATTCCGCAGAGCCCG,"Intron (Rai2-202/Rai2, intron 1 of 1)",20,161717069,161779494,62426,1,Rai2-202,1691,Rai2-202;Rai2-201,Rai2;Rai2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,5,24004,ENSMUSG00000043518,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
4363,cg00896947,0.0000357,0.00000659,5.413427935,0.000000124,gain,yes,-0.0000566,0.0000112,-5.053771715,0.000000742,neg,yes,0.001913573,0.003278924,0.583597866,0.559915255,pos,ns,0.2518777,-0.00012311,0.000112762,-1.09176715,0.275783239,neg,ns,0.782544311,Snd1,Snd1_Intron,6,28538008,28538057,28538008,28538009,50,-,CGTTTTAGCTGATCTGTGCTGTTTGTAGCCATATGGTCCCCTGAGCACGT,"Intron (Snd1-203/Snd1, intron 8 of 16)",6,28480348,28877723,397376,1,Snd1-203,57660,Snd1-203;Snd1-201;Snd1-206,Snd1;Snd1;Snd1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,9,56463,ENSMUSG00000001424,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6267,cg21533331,0.00000264,0.00000704,0.375389387,0.707627615,gain,ns,0.0000604,0.000012,5.050264446,0.000000754,pos,yes,0.008680106,0.003504789,2.476641728,0.013795796,pos,ns,1.860253238,0.00000312,0.000120529,0.025912728,0.979343621,pos,ns,0.124768892,Tshz3,Tshz3_Promoter,7,36690738,36690787,36690738,36690739,50,+,CGCCAGTCTGGTCAATTTATCATGCAAATGTGGGTGCCCTCCGCGCCAGA,Promoter (7-8kb),7,36698118,36773553,75436,1,Tshz3-201,-7331,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,58,243931,ENSMUSG00000021217,conserved gene and region,7,36690706,36690841,136,*,136,14,0.617647059,1.079977311,0.102941177,3.56E-11,CpGisland,TRUE,U13,Hc-P
20943,cg18408272,0.000184787,0.0000105,17.6667276,8.23E-49,gain,yes,-0.0000897,0.0000178,-5.048669282,0.00000076,neg,yes,-0.010859378,0.005205852,-2.085994317,0.03779643,neg,ns,1.422549216,0.000740372,0.000179029,4.135492386,0.0000457,pos,ns,0.450961871,Elp4,Elp4_Intron,2,105779525,105779574,105779573,105779574,50,+,TATTATCCATCCTCATTAATGACAATGGGAAAGTTTATCTTGGGAACACG,"Intron (Elp4-202/Elp4, intron 9 of 9)",2,105701027,105904564,203538,2,Elp4-202,124990,Elp4-202;Elp4-201,Elp4;Elp4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,16,77766,ENSMUSG00000027167,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
510,cg15044753,0.000195586,0.0000173,11.30675463,4.75E-25,gain,yes,-0.000148311,0.0000294,-5.0467798,0.000000767,neg,yes,0.023012466,0.008609453,2.672930051,0.007917209,pos,ns,2.101427904,-0.001102961,0.000296078,-3.725233104,0.000231807,neg,ns,0.334138921,Tox,Tox_Intron,4,6718460,6718509,6718460,6718461,50,-,CGACTGTGTCTCCAATTAGGAACTTAAGGTTCATTTAGTAATTTACATCT,"Intron (Tox-201/Tox, intron 5 of 8)",4,6686353,6990799,304447,2,Tox-201,272290,Tox-201,Tox,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,15,252838,ENSMUSG00000041272,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18468,cg16007694,0.0000715,0.00000598,11.96644589,2.19E-27,gain,yes,-0.0000512,0.0000102,-5.044304718,0.000000776,neg,yes,0.004074411,0.002974265,1.369888162,0.171713184,pos,ns,0.765196358,-0.000279073,0.000102285,-2.72838886,0.006727568,neg,ns,0.890602242,Fggy,Fggy_Exon,4,95822042,95822091,95822090,95822091,50,+,GGTTTCCTTACTGTTGATTTACATGTTTGGCCAGATTTCCATGGCAACCG,"Exon (Fggy-202/Fggy, exon 11 of 16)",4,95557507,95926939,369433,1,Fggy-202,264535,Fggy-202;Fggy-216;Fggy-208;Fggy-201;Fggy-203;Fggy-211;Fggy-204;Fggy-205;Fggy-215,Fggy;Fggy;Fggy;Fggy;Fggy;Fggy;Fggy;Fggy;Fggy,0;0;0;242621;0;0;185155;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,2,75578,ENSMUSG00000028573,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1109,cg12231138,-0.0000226,0.0000101,-2.235189456,0.026116893,loss,ns,0.0000868,0.0000172,5.043544152,0.000000779,pos,yes,0.041309733,0.005043217,8.191147152,6.85E-15,pos,yes,14.16420904,-0.001520139,0.000173436,-8.764849733,1.25E-16,neg,yes,0.223552704,Gm14515,Gm14515_Intergenic_downstream,X,11631252,11631301,11631252,11631253,50,+,CGTGTGGTGAAAGAATTTGCTGGAATCTGCAAGGGAGCTCCTGGCAGCAA,Distal Intergenic,20,11601354,11601569,216,1,Gm14515-201,29898,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,28,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22134,cg18396508,-0.00000717,0.00000571,-1.256753915,0.209788884,loss,ns,0.0000489,0.0000097,5.041549285,0.000000787,pos,yes,0.009627947,0.002841122,3.388783178,0.000792747,pos,ns,3.100865275,-0.000168357,0.0000977,-1.723099595,0.085867697,neg,ns,0.909691975,Osbpl8,Osbpl8_Exon,10,111288697,111288746,111288697,111288698,50,-,CGACCATGGGACCCACTTAATGATATGATACAGTTTGAAAAAGATGGTGT,"Exon (Osbpl8-202/Osbpl8, exon 21 of 24)",10,111164752,111297249,132498,1,Osbpl8-202,123945,Osbpl8-202;Osbpl8-201;Osbpl8-205,Osbpl8;Osbpl8;Osbpl8,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,237542,ENSMUSG00000020189,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
190,cg26980821,0.0000126,0.00000512,2.470784857,0.014019245,gain,ns,-0.0000438,0.00000869,-5.039971448,0.000000793,neg,yes,0.009785045,0.002546043,3.843236034,0.000147316,pos,ns,3.831750972,-0.000320888,0.0000876,-3.66485293,0.000291038,neg,ns,0.936024553,Ascc2,Ascc2_Exon,11,4646605,4646654,4646605,4646606,50,+,CGCCCCCTAAAGACAACATTCCCGCCCTAGTGGAGGAGTACCTGGAACGC,"Exon (Ascc2-201/Ascc2, exon 3 of 20)",11,4637747,4683385,45639,1,Ascc2-201,8858,Ascc2-201;Ascc2-202,Ascc2;Ascc2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,9,75452,ENSMUSG00000020412,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2656,cg24556765,0.00000839,0.00000274,3.065191797,0.002366612,gain,ns,-0.0000234,0.00000465,-5.039801589,0.000000794,neg,yes,-0.002462924,0.001361627,-1.808808727,0.071449457,neg,ns,1.146001066,-0.000054,0.0000468,-1.153143874,0.249739687,neg,ns,0.920794846,Vcl,Vcl_Exon,14,21027178,21027227,21027178,21027179,50,+,CGATTACGAACCTGAGCTGCTGTTAATGCCATCCAATCAGCCGGTCAACC,"Exon (Vcl-202/Vcl, exon 3 of 3)",14,20929398,21033676,104279,1,Vcl-201,97780,Ap3m1-206;Vcl-201;Vcl-202,Ap3m1;Vcl;Vcl,25223;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,8,22330,ENSMUSG00000021823,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27273,cg16372141,0.0000138,0.0000114,1.206194333,0.228662307,gain,ns,0.0000978,0.0000194,5.033757785,0.000000817,pos,yes,0.024018416,0.005691354,4.220158186,0.0000321,pos,ns,4.493475839,-0.000226938,0.000195725,-1.159472999,0.24715572,neg,ns,0.311169038,Rbbp7,Rbbp7_Exon,X,162761641,162761690,162761641,162761642,50,-,CGTTTCTATATGACCTGGTTATGACCCATGCTCTTCAGTGGCCCAGTCTT,"Exon (Rbbp7-201/Rbbp7, exon 2 of 12)",20,162760402,162779092,18691,1,Rbbp7-201,1239,Rbbp7-201;Rbbp7-203;Rbbp7-202;Rbbp7-204,Rbbp7;Rbbp7;Rbbp7;Rbbp7,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,245688,ENSMUSG00000031353,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
22171,cg18713221,-0.00000176,0.00000272,-0.645559458,0.51904223,loss,ns,-0.0000233,0.00000463,-5.033820063,0.000000817,neg,yes,0.000475493,0.001355335,0.350830845,0.725953546,pos,ns,0.139091169,-0.0000907,0.0000466,-1.94599066,0.052559281,neg,ns,0.953526127,Eif5,Eif5_threeUTR,12,111540192,111540241,111540192,111540193,50,+,CGTTACATTGTCAATGGATCTCATGAGGCGAATAAGCTGCAAGACATGTT,3' UTR,12,111538016,111546752,8737,1,Eif5-202,2176,Eif5-202;Eif5-214;Eif5-209;Eif5-204;Eif5-212;Eif5-213;Eif5-207;Eif5-210;Eif5-201;Eif5-203;Eif5-208;Eif5-211;Eif5-215;Eif5-217;Eif5-216;Eif5-205;Eif5-206,Eif5;Eif5;Eif5;Eif5;Eif5;Eif5;Eif5;Eif5;Eif5;Eif5;Eif5;Eif5;Eif5;Eif5;Eif5;Eif5;Eif5,0;0;1976;0;0;0;0;0;0;0;0;0;0;0;0;-1984;-2590,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,3,217869,ENSMUSG00000021282,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U4,Pr-F
25594,cg21451202,0.0000191,0.0000165,1.159676115,0.247073107,gain,ns,-0.000140966,0.000028,-5.032681201,0.000000821,neg,yes,0.000321473,0.008205996,0.039175432,0.968775738,pos,ns,0.013776746,-0.0000743,0.000282204,-0.263206915,0.792565956,neg,ns,0.677209909,Srrt,Srrt_threeUTR,5,137301291,137301340,137301291,137301292,50,-,CGCAGGCATCACCTCCAGGATCTTTACCTTGGCCGCTTGGTCAAACAGAG,3' UTR,5,137295704,137307674,11971,2,Srrt-201,6334,Srrt-201;Srrt-212;Srrt-209;Srrt-211;Srrt-202;Srrt-216;Srrt-205;Srrt-206;Srrt-208;Srrt-217;Srrt-207;Srrt-213;Srrt-215;Srrt-204;Srrt-214;Srrt-203;Srrt-218;Srrt-210,Srrt;Srrt;Srrt;Srrt;Srrt;Srrt;Srrt;Srrt;Srrt;Srrt;Srrt;Srrt;Srrt;Srrt;Srrt;Srrt;Srrt;Srrt,0;0;0;0;-1646;-3866;-4357;-4074;-4438;-3724;-2744;-1282;-973;-1405;0;-560;0;6300,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,2,83701,ENSMUSG00000037364,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24685,cg22749775,0.00013383,0.00000841,15.91190955,4.34E-42,gain,yes,-0.0000719,0.0000143,-5.031785905,0.000000825,neg,yes,-0.01014984,0.00418608,-2.424664663,0.015893882,neg,ns,1.798770019,0.000342617,0.000143959,2.37996031,0.017918975,pos,ns,0.248675075,Neurog2,Neurog2_Promoter,3,127625903,127625952,127625951,127625952,50,-,CACTCTTGTAAATATGAAAGATGCTAATCATATGACATATCACGTCTCCG,Promoter (7-8kb),3,127633135,127635631,2497,1,Neurog2-201,-7232,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,13,14,11924,ENSMUSG00000027967,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
8725,cg12553580,0.0000969,0.00000597,16.23412334,2.55E-43,gain,yes,-0.0000509,0.0000101,-5.022630155,0.000000862,neg,yes,-0.000205666,0.002969825,-0.06925178,0.944833856,neg,ns,0.024644553,0.0000765,0.000102132,0.74891786,0.454474584,pos,ns,0.729247462,Fbxw4,Fbxw4_Intron,19,45617040,45617089,45617088,45617089,50,+,ATTCTTTTGACCTGCACCTAATCAAAGATTCACCGGCCCTTTCAAATCCG,"Intron (Fbxw4-206/Fbxw4, intron 1 of 4)",19,45578254,45631138,52885,2,Fbxw4-206,14049,Fbxw4-206;Fbxw4-201;Fbxw4-208,Fbxw4;Fbxw4;Fbxw4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,14,30838,ENSMUSG00000040913,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18421,cg05560670,0.0000969,0.00000594,16.33104952,1.08E-43,gain,yes,-0.0000506,0.0000101,-5.016046899,0.00000089,neg,yes,-0.003757044,0.002954315,-1.271714064,0.204427963,neg,ns,0.689459698,0.000166808,0.000101599,1.641837311,0.101637755,pos,ns,0.849481828,Csnk2a2,Csnk2a2_threeUTR,8,95477213,95477262,95477261,95477262,50,-,ACGGGGTCCTTTACAGTGTCAATCAGCTTAATGATATTTGTTCCACCACG,3' UTR,8,95446096,95488827,42732,2,Csnk2a2-201,11565,Csnk2a2-201;Csnk2a2-203;Csnk2a2-207;Csnk2a2-210;Csnk2a2-204;Csnk2a2-205;Csnk2a2-202;Csnk2a2-206,Csnk2a2;Csnk2a2;Csnk2a2;Csnk2a2;Csnk2a2;Csnk2a2;Csnk2a2;Csnk2a2,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,2,13000,ENSMUSG00000046707,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26174,cg05630725,0.000142394,0.0000121,11.72809561,1.55E-26,gain,yes,-0.000103388,0.0000206,-5.012392945,0.000000906,neg,yes,0.017543719,0.006042853,2.903218055,0.003958502,pos,ns,2.402469178,-0.001316069,0.000207813,-6.33294355,8.44E-10,neg,yes,0.485402807,Sox5,Sox5_Intron,6,144210906,144210955,144210954,144210955,50,-,TGATTAGATTTTCTGTGGAGAATTCCACGAGGAAATTCCCTTCAAAGCCG,"Intron (Sox5-209/Sox5, intron 4 of 13)",6,143843739,144781977,938239,2,Sox5-209,571022,Sox5-201;Sox5-214;Sox5-205;Sox5-202;Sox5-209;Sox5-210;Sox5-212;Sox5-213,Sox5;Sox5;Sox5;Sox5;Sox5;Sox5;Sox5;Sox5,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,71,20678,ENSMUSG00000041540,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
25506,cg00046614,0.0000722,0.0000068,10.61664087,1.16E-22,gain,yes,-0.0000579,0.0000116,-5.006004434,0.000000934,neg,yes,-0.013493559,0.003386156,-3.984919906,0.0000842,neg,ns,4.074648775,0.000349885,0.00011645,3.004604802,0.002876189,pos,ns,0.860021779,Mgmt,Mgmt_Intron,7,137025278,137025327,137025326,137025327,50,+,AAAGTTGGATTTGAGCAACATCAAGTGAAATGTCTTCCCATCTCACGCCG,"Intron (Mgmt-201/Mgmt, intron 2 of 4)",7,136894614,137130266,235653,1,Mgmt-201,130664,Mgmt-201,Mgmt,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,16,17314,ENSMUSG00000054612,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25335,cg09169719,-0.0000746,0.0000132,-5.639648989,3.84E-08,loss,yes,-0.000112541,0.0000225,-5.005984334,0.000000934,neg,yes,0.042057206,0.006586258,6.385599055,6.23E-10,pos,ns,9.205329296,-0.000818367,0.000226501,-3.613084406,0.000352891,neg,ns,0.862063108,Srrm1,Srrm1_Exon,4,135346357,135346406,135346357,135346358,50,+,CGACATTGGGACACTCACTCTGCTGTGACCTAATAAGGTGATGGTGCTAT,"Exon (Srrm1-212/Srrm1, exon 3 of 16)",4,135320484,135353321,32838,2,Srrm1-203,6915,Srrm1-203;Srrm1-202;Srrm1-208;Srrm1-201;Srrm1-212;Srrm1-204;Srrm1-214;Srrm1-205;Srrm1-207;Srrm1-209;Srrm1-206,Srrm1;Srrm1;Srrm1;Srrm1;Srrm1;Srrm1;Srrm1;Srrm1;Srrm1;Srrm1;Srrm1,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,8,51796,ENSMUSG00000028809,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17290,cg09667213,0.000120924,0.0000113,10.72016195,5.12E-23,gain,yes,-0.0000959,0.0000192,-5.005139025,0.000000938,neg,yes,0.007790303,0.005614217,1.387602856,0.166254627,pos,ns,0.779226259,0.000107465,0.000193072,0.556605623,0.57819849,pos,ns,0.335306089,Shc1,Shc1_fiveUTR,3,89422261,89422310,89422261,89422262,50,-,CGGGAGCTTTGTCAATAAGCCCACGCGGGGCTGGCTGCATCCCAACGACA,5' UTR,3,89418443,89430015,11573,1,Shc1-201,3818,Cks1b-201;Cks1b-202;Cks1b-203;Shc1-201;Shc1-204;Shc1-210;Shc1-209;Shc1-205;Shc1-203;Shc1-208;Shc1-202;Shc1-206;Shc1-207,Cks1b;Cks1b;Cks1b;Shc1;Shc1;Shc1;Shc1;Shc1;Shc1;Shc1;Shc1;Shc1;Shc1,0;0;0;0;0;0;0;0;0;0;0;0;-2216,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,3,20416,ENSMUSG00000042626,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U4,Pr-F
9140,cg24006557,0.0000744,0.0000207,3.587433174,0.00038793,gain,ns,0.000176373,0.0000353,5.00346519,0.000000945,pos,yes,-0.002462094,0.010327098,-0.238411019,0.811719839,neg,ns,0.090593839,0.000909212,0.000355148,2.560094062,0.010938232,pos,ns,0.674598497,Samd4,Samd4_Exon,14,47083554,47083603,47083602,47083603,50,-,CTCTTTCGGTCTTTCCCTCGGAAAACCCTTCTAGACATATCAGGATATCG,"Exon (Samd4-201/Samd4, exon 9 of 13)",14,46882854,47103150,220297,1,Samd4-201,200700,Samd4-201;Samd4-211;Samd4-202;Samd4-206;Samd4-203;Samd4-204;Samd4-210;Samd4-205,Samd4;Samd4;Samd4;Samd4;Samd4;Samd4;Samd4;Samd4,0;0;0;0;0;0;0;-3532,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,11,16,74480,ENSMUSG00000021838,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16308,cg04952588,-0.00000523,0.0000148,-0.354156523,0.723462353,loss,ns,0.000125581,0.0000251,5.001133072,0.000000956,pos,yes,0.023269537,0.007356556,3.163102091,0.001715651,pos,ns,2.765571005,-0.000401146,0.000252991,-1.585609973,0.11384732,neg,ns,0.752471701,Mrm1,Mrm1_Intergenic_downstream,11,84726276,84726325,84726276,84726277,50,+,CGGTTCTGTAAATGACATTCTGTACTGTTAGCATTTTAAATGTGGCACAA,Distal Intergenic,11,84814743,84815390,648,2,Mrm1-203,89065,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,37,42,217038,ENSMUSG00000018405,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5675,cg09654498,0.0000855,0.0000225,3.806831253,0.000169635,gain,ns,-0.000190615,0.0000382,-4.996283972,0.000000978,neg,yes,0.091800139,0.011177061,8.213262861,5.89E-15,pos,yes,14.22987078,-0.002326758,0.000384378,-6.053302471,4.09E-09,neg,yes,0.609852301,Mapkap1,Mapkap1_Intron,2,34535181,34535230,34535229,34535230,50,-,AAGCAATTTGGATGCTTGCCAGGAGTCATTGTTCACCCTCGGCTGTGGCG,"Intron (Mapkap1-204/Mapkap1, intron 6 of 10)",2,34406862,34623475,216614,1,Mapkap1-204,128319,Mapkap1-204;Mapkap1-202;Mapkap1-201;Mapkap1-209;Mapkap1-203;Mapkap1-207,Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,59,227743,ENSMUSG00000038696,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5477,cg04830281,0.0000184,0.00000609,3.020534325,0.002733259,gain,ns,-0.0000517,0.0000103,-4.995625234,0.000000981,neg,yes,0.006667549,0.003029165,2.201117482,0.028464522,pos,ns,1.545696105,-0.000543195,0.000104173,-5.214371214,0.000000338,neg,yes,0.849567205,Dnajc19,Dnajc19_threeUTR,3,34058152,34058201,34058152,34058153,50,+,CGTCTCTTCTGTACAAGGTTCTAGGTCTTATAGCGGAAGAGGCAGAGGTC,3' UTR,3,34056020,34081312,25293,2,Dnajc19-201,23111,Dnajc19-201;Fxr1-201;Fxr1-202;Fxr1-207;Fxr1-206;Fxr1-204;Fxr1-208,Dnajc19;Fxr1;Fxr1;Fxr1;Fxr1;Fxr1;Fxr1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,8,67713,ENSMUSG00000027679,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14740,cg02714778,-0.00000352,0.00000779,-0.452264316,0.651394887,loss,ns,-0.0000661,0.0000132,-4.995579833,0.000000982,neg,yes,0.00769658,0.003878034,1.984660203,0.048063589,pos,ns,1.318183799,-0.000746923,0.000133365,-5.600578073,4.71E-08,neg,yes,0.776714804,Git1,Git1_Exon,11,77506497,77506546,77506497,77506498,50,-,CGCCCCAGTGGACTTCCAGCTGCTGACTCAGCAGGTGATCCAGTGCGCCT,"Exon (Git1-201/Git1, exon 20 of 20)",11,77493562,77507786,14225,1,Git1-201,12935,Git1-201;Git1-202;Git1-206;Git1-203;Git1-205;Git1-204;Trp53i13-201;Trp53i13-203;Trp53i13-202;Trp53i13-204,Git1;Git1;Git1;Git1;Git1;Git1;Trp53i13;Trp53i13;Trp53i13;Trp53i13,0;0;7406;5509;4018;1361;6824;6217;6489;9185,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,216963,ENSMUSG00000011877,conserved gene but different region,11,77506417,77506498,82,*,82,9,0.682926829,0.942528736,0.109756098,0.000000162,CpGisland,TRUE,NA,NRS
8593,cg25830020,0.0000436,0.00000449,9.707770265,1.26E-19,gain,yes,-0.0000381,0.00000764,-4.985040999,0.00000103,neg,yes,-0.006331574,0.002237115,-2.830241255,0.004954957,neg,ns,2.304960096,0.000156587,0.0000769,2.035341773,0.042666774,pos,ns,0.801317661,Btrc,Btrc_Exon,19,45423148,45423197,45423196,45423197,50,+,TCTCTGTGGCTGGGCTGCTCCAGCCTGGCGGACAGCATGCCTTCGCTGCG,"Exon (Btrc-201/Btrc, exon 2 of 15)",19,45363734,45507736,144003,1,Btrc-204,59414,Btrc-204;Btrc-201;Btrc-210;Btrc-206;Btrc-202;Btrc-207;Btrc-203,Btrc;Btrc;Btrc;Btrc;Btrc;Btrc;Btrc,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,30,98,12234,ENSMUSG00000025217,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1798,cg21202820,-0.000000296,0.0000109,-0.02710672,0.978392056,loss,ns,0.0000923,0.0000185,4.984906594,0.00000103,pos,yes,0.014825159,0.005426044,2.732222421,0.006651632,pos,ns,2.17707181,-0.000223731,0.000186601,-1.198979475,0.231451612,neg,ns,0.685109458,Gm5513,Gm5513_Intergenic_upstream,19,15340846,15340895,15340894,15340895,50,-,ATAATGGATATCCTGGGGGCTGTGAGAACACGTTGATTTATGCAACCTCG,Distal Intergenic,19,14959549,14960766,1218,2,Gm5513-201,-380129,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,22,433225,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23382,cg12939608,0.0000476,0.00000406,11.72214047,1.63E-26,gain,yes,-0.0000344,0.0000069,-4.983087194,0.00000104,neg,yes,-0.000280856,0.002020036,-0.139035063,0.88951272,neg,ns,0.050847837,-0.0000595,0.0000695,-0.856509894,0.392377392,neg,ns,0.863021804,Smg1,Smg1_Exon,7,118212475,118212524,118212523,118212524,50,+,GGTGAACTCAGGGCTGGTCACATTGTTAACCCTCAGCTCTTGCCCCAACG,"Exon (Smg1-201/Smg1, exon 3 of 63)",7,118131308,118243637,112330,2,Smg1-201,31113,Smg1-201;Smg1-204;Smg1-209;Smg1-206;Smg1-203;Smg1-205,Smg1;Smg1;Smg1;Smg1;Smg1;Smg1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,9,233789,ENSMUSG00000030655,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17052,cg18230558,-0.0000173,0.0000173,-1.00070634,0.317749273,loss,ns,0.000146612,0.0000294,4.982853405,0.00000104,pos,yes,0.031356315,0.00862001,3.637619259,0.000322178,pos,ns,3.491904383,-0.000440724,0.000296441,-1.486713906,0.138106731,neg,ns,0.329498792,Il1rapl1,Il1rapl1_fiveUTR,X,88115619,88115668,88115619,88115620,50,-,CGACGGGGTTTTCCTTGTACAGTACTGCTATGTGAAAGCACACAACCCCT,Promoter (<=1kb),20,86740870,88115645,1374776,2,Il1rapl1-203,0,Il1rapl1-203;Il1rapl1-202,Il1rapl1;Il1rapl1,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,18,331461,ENSMUSG00000052372,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10293,cg21296237,0.0000449,0.00000311,14.44297076,1.64E-36,gain,yes,-0.0000263,0.00000528,-4.979102285,0.00000106,neg,yes,-0.004058619,0.00154782,-2.622152175,0.009169038,neg,ns,2.03767622,0.000107976,0.0000532,2.02850607,0.04336321,pos,ns,0.942073606,Hibadh,Hibadh_Intron,6,52567451,52567500,52567499,52567500,50,+,TCACAGGGACCATTTACGACTTGCTATGGTGTCTCTATTGTTTACCAGCG,"Intron (Hibadh-201/Hibadh, intron 4 of 7)",6,52546228,52640389,94162,2,Hibadh-201,72889,Hibadh-201;Hibadh-203,Hibadh;Hibadh,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,13,58875,ENSMUSG00000029776,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8403,cg19100188,0.00000252,0.0000104,0.242626447,0.808455239,gain,ns,0.0000879,0.0000176,4.979011197,0.00000106,pos,yes,0.023076457,0.005170143,4.463408083,0.0000113,pos,ns,4.946709886,-0.000444223,0.000177801,-2.498429682,0.012992045,neg,ns,0.339482079,Zeb2,Zeb2_threeUTR,2,45097120,45097169,45097168,45097169,50,-,AAATACCTCCAGGGAAAACCCTGAAACTGATGAACAGTTATGTCAAGTCG,3' UTR,2,44983632,45117395,133764,2,Zeb2-212,20226,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219;Zeb2-211,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,10,158,24136,ENSMUSG00000026872,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25975,cg04745590,0.0000348,0.0000122,2.851824186,0.004638796,gain,ns,0.000103214,0.0000207,4.976572336,0.00000108,pos,yes,0.015282952,0.006076136,2.515242123,0.012400574,pos,ns,1.906558217,-0.00026623,0.000208958,-1.274083717,0.203588075,neg,ns,0.157002553,Tmem164,Tmem164_fiveUTR,X,142682294,142682343,142682342,142682343,50,+,GGCCAACGGCTCCTTTCAACCCTGCCTCGTTGGTGGCCACTGGAGAAGCG,Promoter (<=1kb),20,142681406,142843494,162089,1,Tmem164-204,888,Tmem164-204;Tmem164-202;Tmem164-205;Tmem164-201;Tmem164-206;Tmem164-208;Tmem164-207,Tmem164;Tmem164;Tmem164;Tmem164;Tmem164;Tmem164;Tmem164,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,15,209497,ENSMUSG00000047045,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
661,cg11075694,0.0000246,0.0000103,2.379409844,0.017945265,gain,ns,0.0000873,0.0000176,4.969632923,0.00000111,pos,yes,0.022639694,0.0051458,4.399645258,0.0000149,pos,ns,4.825941564,-0.000310857,0.000176964,-1.756612652,0.079971161,neg,ns,0.683070684,Ppp1r3f,Ppp1r3f_Exon,X,7573342,7573391,7573390,7573391,50,+,GCTGCTGCTGGGGCAGCCCTTCGGCATCAGTGGGTGTGGGAGCGGGTGCG,Promoter (<=1kb),20,7557296,7574283,16988,2,Ppp1r3f-205,892,Foxp3-209;Ppp1r3f-205;Ppp1r3f-201;Ppp1r3f-203,Foxp3;Ppp1r3f;Ppp1r3f;Ppp1r3f,-253;0;0;-499,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,8,54646,ENSMUSG00000039556,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
17994,cg05623230,0.0000297,0.0000147,2.016736199,0.044584966,gain,ns,0.000124126,0.000025,4.959107444,0.00000117,pos,yes,0.032644437,0.007332908,4.451772038,0.0000119,pos,ns,4.924567478,-0.000718167,0.000252178,-2.847854324,0.004695535,neg,ns,0.397650322,Arx,Arx_Intron,X,93291098,93291147,93291098,93291099,50,+,CGGTAAACAGGTTGTAAGCCGTTTTACAGCATCTTAATGGTTTCCTATTT,"Intron (Arx-201/Arx, intron 2 of 4)",20,93286496,93298357,11862,1,Arx-201,4602,Arx-203;Arx-201;Arx-202,Arx;Arx;Arx,4653;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,32,11878,ENSMUSG00000035277,conserved gene and region,X,93291081,93291118,38,*,38,6,0.552631579,2.072727273,0.157894737,0.00000546,CpGisland,TRUE,U13,Hc-P
14927,cg08566952,-0.0000329,0.0000167,-1.967429792,0.050025015,loss,ns,0.000140904,0.0000284,4.955912117,0.00000119,pos,yes,0.009468439,0.008329438,1.136744031,0.256523241,pos,ns,0.590873281,-0.0000617,0.000286449,-0.215238101,0.829723221,neg,ns,0.401841059,Nr2f1,Nr2f1_Intron,13,78177904,78177953,78177952,78177953,50,-,ACTTAGCGCTTGTCTGACAAAACAATGTCCTTTAACTTTATTACACATCG,"Intron (3110006O06Rik-201/3110006O06Rik-201, intron 1 of 1)",13,78189872,78190443,572,2,Nr2f1-204,12539,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,55,13865,ENSMUSG00000069171,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
25205,cg08796800,-0.00000248,0.0000101,-0.244766843,0.806798906,loss,ns,0.0000853,0.0000172,4.951309072,0.00000121,pos,yes,0.013004312,0.005046332,2.576983061,0.010428813,pos,ns,1.981765127,-0.000319111,0.000173543,-1.838802339,0.066900661,neg,ns,0.143622615,Pcdh19,Pcdh19_Promoter,X,133691433,133691482,133691481,133691482,50,-,TTGTGGCGAAGGCTGTCAGGAACCCACTGATCAATAAAAGTAAACTGGCG,Promoter (2-3kb),20,133582860,133688987,106128,2,Pcdh19-202,-2495,Pcdh19-202;Pcdh19-203,Pcdh19;Pcdh19,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,8,279653,ENSMUSG00000051323,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
27246,cg03837769,0.0000909,0.0000133,6.819158668,4.80E-11,gain,yes,0.000112048,0.0000226,4.947657307,0.00000123,pos,yes,0.03516408,0.006634698,5.300026971,0.00000022,pos,ns,6.657058922,-0.000498189,0.000228167,-2.183441809,0.029752844,neg,ns,0.385864327,Nhs,Nhs_Exon,X,161908714,161908763,161908762,161908763,50,-,ATGCTGCCTTCTGATGAGGAAGTCGACTGGGGAGGTCTCTGCGCACGGCG,"Exon (Gm15202-201/Gm15202-201, exon 2 of 2)",20,161833296,162159730,326435,2,Nhs-202,250967,Nhs-202;Nhs-201,Nhs;Nhs,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,12,195727,ENSMUSG00000059493,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
19559,cg03779905,0.0000152,0.00000796,1.913510413,0.056603581,gain,ns,0.0000668,0.0000135,4.944575542,0.00000125,pos,yes,0.020153231,0.003959617,5.089692351,0.000000623,pos,ns,6.205466275,-0.000406176,0.000136171,-2.982837188,0.003082596,neg,ns,0.445428889,Tmem28,Tmem28_Exon,X,99821614,99821663,99821662,99821663,50,+,AAAAAACTTGCTCAAAGGCCACTTTCGGAACTTCACTCTCTCCTTTTGCG,Promoter (<=1kb),20,99821021,99848790,27770,1,Tmem28-201,593,Tmem28-201,Tmem28,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,7,620592,ENSMUSG00000071719,conserved gene and region,X,99821158,99821708,551,*,551,58,0.691470054,0.900783584,0.105263158,1.24E-45,CpGisland,TRUE,U13,Hc-P
21315,cg24992459,0.0000792,0.0000106,7.455836349,9.01E-13,gain,yes,-0.0000892,0.000018,-4.943106181,0.00000126,neg,yes,0.004039732,0.005284727,0.764416472,0.445200561,pos,ns,0.351444297,0.000107892,0.000181741,0.59365467,0.553176019,pos,ns,0.777939441,Nfat5,Nfat5_Intron,8,107332191,107332240,107332239,107332240,50,-,CCAGAGACACTTAACCCATCCAATCTCACCCAGGGTATAGGTCGGTCTCG,"Intron (Nfat5-213/Nfat5, intron 2 of 14)",8,107293470,107372227,78758,1,Nfat5-213,38721,Nfat5-212;Nfat5-213;Nfat5-214;Nfat5-206;Nfat5-210;Nfat5-211;Nfat5-203;Nfat5-201,Nfat5;Nfat5;Nfat5;Nfat5;Nfat5;Nfat5;Nfat5;Nfat5,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,17,54446,ENSMUSG00000003847,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19417,cg15840225,0.000226839,0.0000137,16.53070044,1.87E-44,gain,yes,-0.000115147,0.0000233,-4.939328398,0.00000128,neg,yes,0.01035508,0.006829721,1.516179078,0.13049309,pos,ns,0.884412485,-0.000319855,0.000234874,-1.361817335,0.174244348,neg,ns,0.629819431,Gm12689,Gm12689_Intergenic_upstream,4,99282243,99282292,99282243,99282244,50,+,CGAGTTGTAACAAGAACAAGATGAGCTTGTGGCCTCGGGCTTCTAACCTG,Distal Intergenic,4,99295900,99297258,1359,1,Gm12689-201,-13608,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,26,100137011,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14732,cg11287852,0.0000377,0.0000192,1.963540914,0.050476914,gain,ns,-0.000161273,0.0000326,-4.940391088,0.00000128,neg,yes,0.010186166,0.009563509,1.06510764,0.287656101,pos,ns,0.54112641,-0.000871094,0.000328888,-2.648601713,0.0084964,neg,ns,0.567794919,Rnf165,Rnf165_Exon,18,77484384,77484433,77484432,77484433,50,+,GCTGCTGCGGCTGCGGGGGGCCCAGGTGGAAGTGGCGGCAGGAGGTAGCG,"Exon (Rnf165-201/Rnf165, exon 2 of 8)",18,77456110,77565136,109027,2,Rnf165-201,80703,Rnf165-201;Rnf165-202;Rnf165-204;Rnf165-206,Rnf165;Rnf165;Rnf165;Rnf165,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,21,225743,ENSMUSG00000025427,conserved gene but different region,18,77484249,77484433,185,*,185,14,0.735135135,0.625603865,0.075675676,2.48E-09,CpGisland,TRUE,NA,NRS
17989,cg17962021,0.0000287,0.0000184,1.563466783,0.118963072,gain,ns,0.000153939,0.0000312,4.937958166,0.00000129,pos,yes,0.029514591,0.009133102,3.231606525,0.001363353,pos,ns,2.865391639,-0.000860585,0.000314087,-2.739961881,0.006500681,neg,ns,0.253686208,Arx,Arx_Promoter,X,93282673,93282722,93282673,93282674,50,+,CGACGCTTGTTATCCTCACAAGGCTTCAGTTTGTTTGCCTGATCTCAGCA,Promoter (3-4kb),20,93286445,93288382,1938,1,Arx-203,-3723,Arx-203;Arx-201;Arx-202,Arx;Arx;Arx,-3723;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,7,32,11878,ENSMUSG00000035277,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
25666,cg22940022,0.0000936,0.000013,7.177716159,5.27E-12,gain,yes,-0.000109392,0.0000222,-4.936288375,0.0000013,neg,yes,0.048718683,0.006492365,7.503996064,6.60E-13,pos,yes,12.18030227,-0.002157097,0.000223272,-9.661302727,1.78E-19,neg,yes,0.632279955,Mcm7,Mcm7_Exon,5,138165338,138165387,138165338,138165339,50,-,CGAGACAAGTGCAATGCCCAGGGCAGCGTCCAGCAATTGCCCAAGTCTCC,"Exon (Mcm7-202/Mcm7, exon 1 of 2)",5,138164583,138172422,7840,2,Mcm7-201,7035,Cops6-201;Cops6-202;Cops6-203;Cops6-205;Cops6-204;Mcm7-201;Mcm7-202;Mcm7-208;Mcm7-205;Mcm7-209;Mcm7-203;Mcm7-204;Mcm7-210;Mcm7-207;Mcm7-206,Cops6;Cops6;Cops6;Cops6;Cops6;Mcm7;Mcm7;Mcm7;Mcm7;Mcm7;Mcm7;Mcm7;Mcm7;Mcm7;Mcm7,4267;4238;4229;4169;2561;0;0;0;4994;5879;4256;5630;6428;5274;5854,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,17220,ENSMUSG00000029730,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
848,cg09194982,-0.000025,0.00000904,-2.768108117,0.005977467,loss,ns,0.0000758,0.0000154,4.93659008,0.0000013,pos,yes,0.007985732,0.004497506,1.775591432,0.076781275,pos,ns,1.114744681,-0.0000317,0.000154669,-0.2051746,0.83757037,neg,ns,0.20190965,Gm49447,Gm49447_Intergenic_upstream,16,9009454,9009503,9009454,9009455,50,+,CGCAGCTTTTTTTGGGTCTAGAGAGCCAGTTTCCATGATGAAAGTGGCAC,Distal Intergenic,16,8996088,8996396,309,2,Gm49447-201,-13058,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16804,cg20668096,0.0000296,0.0000121,2.44980303,0.014846308,gain,ns,-0.000101158,0.0000205,-4.931481533,0.00000133,neg,yes,-0.00573798,0.006009538,-0.954812133,0.340416659,neg,ns,0.467989195,-0.000339159,0.000206668,-1.641083347,0.101794253,neg,ns,0.871022745,Lrba,Lrba_Intron,3,86551296,86551345,86551344,86551345,50,-,CCACTTCAAGTCTTCAGACCGATTCATCTGTATTCTCTTGTTATAATCCG,"Intron (Lrba-202/Lrba, intron 40 of 50)",3,86224680,86746712,522033,1,Lrba-202,326616,Lrba-202;Lrba-204;Lrba-201;Lrba-203;Lrba-205;Lrba-206;Mab21l2-201;Mab21l2-202,Lrba;Lrba;Lrba;Lrba;Lrba;Lrba;Mab21l2;Mab21l2,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,45,80877,ENSMUSG00000028080,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
15682,cg03811583,0.0000131,0.0000132,0.992764547,0.321598972,gain,ns,0.000110596,0.0000224,4.931291911,0.00000133,pos,yes,0.015134722,0.006570488,2.303439535,0.02191561,pos,ns,1.659246444,-0.0000369,0.000225959,-0.163162311,0.870496954,neg,ns,0.224509813,Gm14741,Gm14741_Intergenic_upstream,X,82814771,82814820,82814771,82814772,50,-,CGTTGTAGCAGCTGCATAATAAATGACTGAAAGAATCATGTTAGGCATGC,Distal Intergenic,20,82757430,82758438,1009,2,Gm14741-201,-56382,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,11,100415954,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22093,cg22741677,-0.00000296,0.0000217,-0.136362354,0.891623344,loss,ns,0.00018204,0.0000369,4.931832232,0.00000133,pos,yes,0.033095303,0.010813725,3.060490495,0.002402961,pos,ns,2.619253277,-0.000479797,0.000371883,-1.290182841,0.197948727,neg,ns,0.390267337,Pou3f4,Pou3f4_threeUTR,X,110816162,110816211,110816162,110816163,50,+,CGGTGTTTTACTACAATCTGTACACAATATTTGTGAGATAATTTGTATCT,3' UTR,20,110814280,110817207,2928,1,Pou3f4-201,1882,Pou3f4-201,Pou3f4,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,7,18994,ENSMUSG00000056854,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
2577,cg03817728,-0.0000112,0.00000653,-1.70639821,0.088935442,loss,ns,0.0000547,0.0000111,4.928816078,0.00000135,pos,yes,0.008377536,0.003252281,2.575895151,0.010460977,pos,ns,1.980427771,-0.0000549,0.000111846,-0.490521026,0.62411227,neg,ns,0.884682871,Rbm10,Rbm10_Intron,X,20641117,20641166,20641117,20641118,50,-,CGGGAACGCCGTGTGTCCAAAGCTGTTGACTAACCCACTGCGTCTGTATC,"Intron (Rbm10-205/Rbm10, intron 5 of 23)",20,20617503,20650888,33386,1,Rbm10-205,23614,Rbm10-205;Rbm10-204;Rbm10-203;Rbm10-206;Rbm10-201;Rbm10-202;Rbm10-207,Rbm10;Rbm10;Rbm10;Rbm10;Rbm10;Rbm10;Rbm10,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,14,236732,ENSMUSG00000031060,conserved gene and region,X,20641104,20641268,165,*,165,11,0.56969697,0.821638751,0.066666667,0.000000724,CpGisland,TRUE,U10,Tr-S
1689,cg10990973,0.000162657,0.0000212,7.685719487,2.02E-13,gain,yes,-0.000176806,0.000036,-4.917537345,0.00000142,neg,yes,0.084740925,0.01053333,8.045027238,1.85E-14,pos,yes,13.73313935,-0.00198351,0.00036224,-5.475672891,9.02E-08,neg,yes,0.64902931,Tle4,Tle4_Intron,19,14590327,14590376,14590327,14590328,50,-,CGAGCCTTTTATCTGCCCTGGACAGCATTTTCTCCAGCAGATGAAGTAGA,"Intron (Tle4-201/Tle4, intron 4 of 19)",19,14448150,14598051,149902,2,Tle4-201,7675,Tle4-201;Tle4-202;Tle4-203,Tle4;Tle4;Tle4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,29,21888,ENSMUSG00000024642,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11250,cg21667939,0.0000331,0.00000917,3.60714428,0.00036073,gain,ns,-0.0000767,0.0000156,-4.918641825,0.00000142,neg,yes,0.002524957,0.004565518,0.553049326,0.580628231,pos,ns,0.236101852,-0.00031858,0.000157008,-2.029068798,0.043305516,neg,ns,0.829214428,Tomm70a,Tomm70a_Exon,16,57134731,57134780,57134731,57134732,50,-,CGTGCAAAAGCCCATGAGAAGCTAGACAATAAGAAGGAATGTTTAGAAGG,"Exon (Tomm70a-201/Tomm70a, exon 3 of 12)",16,57121703,57156705,35003,1,Tomm70a-201,13028,Tomm70a-201;Tomm70a-202,Tomm70a;Tomm70a,0;-2718,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,28185,ENSMUSG00000022752,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1606,cg20998727,-0.0000117,0.0000162,-0.723747403,0.469766608,loss,ns,0.000135199,0.0000275,4.918859612,0.00000142,pos,yes,0.03560101,0.008052446,4.421142271,0.0000136,pos,ns,4.866502332,-0.000982695,0.000276923,-3.548620782,0.000447211,neg,ns,0.397319487,Cask,Cask_Intron,X,13844889,13844938,13844937,13844938,50,+,CTTGGTTTCATTTCCCAACTGTGGACCTTAAAATAGACAATAAAGCACCG,"Intron (Cask-203/Cask, intron 1 of 24)",20,13517080,13846541,329462,2,Cask-203,1603,Cask-203;Cask-204;Cask-201;Cask-210;Cask-205;Cask-208;Cask-211,Cask;Cask;Cask;Cask;Cask;Cask;Cask,0;0;0;0;0;0;1797,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,9,12361,ENSMUSG00000031012,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11898,cg12433048,0.0000675,0.00000673,10.02666321,1.12E-20,gain,yes,-0.0000561,0.0000114,-4.908732452,0.00000148,neg,yes,0.009792647,0.003348867,2.924167271,0.003708326,pos,ns,2.430822079,-0.000327864,0.000115167,-2.846855156,0.004709914,neg,ns,0.717616243,Csnk1a1,Csnk1a1_Intron,18,61571793,61571842,61571793,61571794,50,+,CGGTGTTGCCTGTCTGCGCCGGCCATTGTTGCAATGTAAGCAATACTGTT,"Intron (Csnk1a1-204/Csnk1a1, intron 4 of 9)",18,61555274,61590061,34788,1,Csnk1a1-204,16519,Csnk1a1-204;Csnk1a1-206;Csnk1a1-201;Csnk1a1-207;Csnk1a1-202;Csnk1a1-210;Csnk1a1-208;Csnk1a1-203,Csnk1a1;Csnk1a1;Csnk1a1;Csnk1a1;Csnk1a1;Csnk1a1;Csnk1a1;Csnk1a1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,9,93687,ENSMUSG00000024576,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4403,cg07962869,0.0000855,0.0000115,7.425348629,1.10E-12,gain,yes,-0.0000959,0.0000196,-4.904313221,0.00000152,neg,yes,0.029066492,0.005729027,5.073547519,0.000000674,pos,ns,6.171392157,-0.000677659,0.000197021,-3.439530906,0.000662516,neg,ns,0.662326269,Lrrc4,Lrrc4_Intron,6,28817178,28817227,28817226,28817227,50,-,TGGACAGGTCCAAGCTGTCTGAGCCATCAGCAGCTGCACCTCCTCCCTCG,"Intron (Snd1-203/Snd1, intron 15 of 16)",6,28661831,28830345,168515,2,Lrrc4-202,13118,Lrrc4-202;Snd1-203;Snd1-201;Snd1-206;Snd1-210;Snd1-209,Lrrc4;Snd1;Snd1;Snd1;Snd1;Snd1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,6,192198,ENSMUSG00000049939,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11158,cg02275649,-0.0000457,0.000012,-3.821130933,0.000160511,loss,ns,0.0000996,0.0000203,4.899916363,0.00000155,pos,yes,0.013606725,0.005954278,2.285201426,0.022976064,pos,ns,1.638724375,-0.000125089,0.000204767,-0.610882623,0.541724927,neg,ns,0.449487641,Fhl1,Fhl1_Exon,X,56791382,56791431,56791430,56791431,50,+,TCGTGGGTGGTGGTTCTTTATAGAAAAAATCGAAGCTTAGCAGCTCCTCG,"Exon (Fhl1-203/Fhl1, exon 7 of 8)",20,56731787,56793346,61560,1,Fhl1-201,59595,Fhl1-201;Fhl1-203;Fhl1-206;Fhl1-205;Fhl1-204;Fhl1-202;Fhl1-210;Fhl1-207;Fhl1-208;Fhl1-209,Fhl1;Fhl1;Fhl1;Fhl1;Fhl1;Fhl1;Fhl1;Fhl1;Fhl1;Fhl1,0;0;0;0;0;0;11563;0;3657;3384,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,11,14199,ENSMUSG00000023092,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25667,cg23994606,0.000076,0.0000106,7.143672933,6.52E-12,gain,yes,-0.0000885,0.0000181,-4.894927992,0.00000158,neg,yes,0.041286839,0.005295352,7.79680717,9.73E-14,pos,yes,13.01209095,-0.001792948,0.000182107,-9.84558804,4.44E-20,neg,yes,0.623872236,Mcm7,Mcm7_Exon,5,138165316,138165365,138165364,138165365,50,-,TGTTGGGCCGGCACTGTCAGACCGAGACAAGTGCAATGCCCAGGGCAGCG,"Exon (Mcm7-202/Mcm7, exon 1 of 2)",5,138164583,138172422,7840,2,Mcm7-201,7057,Cops6-201;Cops6-202;Cops6-203;Cops6-205;Cops6-204;Mcm7-201;Mcm7-202;Mcm7-208;Mcm7-205;Mcm7-209;Mcm7-203;Mcm7-204;Mcm7-210;Mcm7-207;Mcm7-206,Cops6;Cops6;Cops6;Cops6;Cops6;Mcm7;Mcm7;Mcm7;Mcm7;Mcm7;Mcm7;Mcm7;Mcm7;Mcm7;Mcm7,4245;4216;4207;4147;2539;0;0;0;5016;5901;4278;5652;6450;5296;5876,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,17220,ENSMUSG00000029730,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27579,cg16878881,-0.0000294,0.0000102,-2.876444919,0.004300623,loss,ns,0.0000848,0.0000173,4.893073948,0.0000016,pos,yes,0.013174076,0.005078869,2.59389952,0.009939934,pos,ns,2.002616497,-0.000276555,0.000174662,-1.58337433,0.114355788,neg,ns,0.883910754,Tshz2,Tshz2_threeUTR,2,170071274,170071323,170071322,170071323,50,-,TTTTTCATTAAAACTTTGAGGGCCCAATTTTAATTTGTGGAATATTCCCG,3' UTR,2,169884893,170071816,186924,1,Tshz2-203,186381,Tshz2-203;Tshz2-205,Tshz2;Tshz2,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,8,30,228911,ENSMUSG00000047907,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26173,cg07322848,0.0000674,0.0000107,6.282067511,1.13E-09,gain,yes,-0.0000892,0.0000182,-4.890544702,0.00000162,neg,yes,0.018976702,0.005340619,3.553277516,0.000439674,pos,ns,3.356869176,-0.00106074,0.000183663,-5.775456954,1.87E-08,neg,yes,0.149945451,Sox5,Sox5_Intron,6,144210933,144210982,144210933,144210934,50,+,CGAGGAAATTCCCTTCAAAGCCGAAGTGATTAACTGGGGGCTATTCTGGA,"Intron (Sox5-209/Sox5, intron 4 of 13)",6,143843739,144781977,938239,2,Sox5-209,570995,Sox5-201;Sox5-214;Sox5-205;Sox5-202;Sox5-209;Sox5-210;Sox5-212;Sox5-213,Sox5;Sox5;Sox5;Sox5;Sox5;Sox5;Sox5;Sox5,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,71,20678,ENSMUSG00000041540,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
25160,cg12068417,-0.0000694,0.000028,-2.482420834,0.013578417,loss,ns,-0.000232132,0.0000475,-4.88715608,0.00000164,neg,yes,-0.007850973,0.013915398,-0.564193218,0.573030599,neg,ns,0.241822187,0.001913206,0.000478549,3.997928365,0.0000799,pos,ns,0.774614102,Wasf2,Wasf2_threeUTR,4,133198148,133198197,133198196,133198197,50,+,TGGTAATGATCTGCAAGTCCCGGAGAGCAACAGCACAGCTCTGCCTGACG,3' UTR,4,133130505,133199756,69252,1,Wasf2-201,67643,Wasf2-201;Wasf2-202,Wasf2;Wasf2,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,5,242687,ENSMUSG00000028868,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
56,cg03124868,0.0000289,0.00000998,2.891983641,0.004098918,gain,ns,-0.0000828,0.000017,-4.884683982,0.00000166,neg,yes,0.040866525,0.004966014,8.229241421,5.28E-15,pos,yes,14.27737901,-0.001198258,0.000170781,-7.016349125,1.44E-11,neg,yes,0.842178204,Ankib1,Ankib1_Exon,5,3701925,3701974,3701925,3701926,50,-,CGAAGGTAAGGCCTATTGACTTTCTGGGCAAGGTCTTCAGTGACCATTTC,"Exon (Ankib1-201/Ankib1, exon 16 of 20)",5,3690000,3802925,112926,2,Ankib1-201,100951,Ankib1-201;Ankib1-203;Ankib1-206;Ankib1-205,Ankib1;Ankib1;Ankib1;Ankib1,0;0;0;-56,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,70797,ENSMUSG00000040351,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23704,cg00321644,0.00000171,0.00000351,0.486027565,0.627290995,gain,ns,-0.0000292,0.00000597,-4.884923369,0.00000166,neg,yes,-0.001730677,0.001748703,-0.989692174,0.323096447,neg,ns,0.490667818,0.0000148,0.0000601,0.245474146,0.806251754,pos,ns,0.908196559,Wnk1,Wnk1_Exon,6,119963553,119963602,119963553,119963554,50,-,CGTTCATGAATAGTTGGGAAAAATATCTGTGATTCTGGGTATGTTGGGGT,"Exon (Wnk1-203/Wnk1, exon 9 of 28)",6,119923969,120038672,114704,2,Wnk1-202,75070,Wnk1-202;Wnk1-203;Wnk1-223;Wnk1-204;Wnk1-224;Wnk1-221;Wnk1-214;Wnk1-211;Wnk1-206;Wnk1-210;Wnk1-218,Wnk1;Wnk1;Wnk1;Wnk1;Wnk1;Wnk1;Wnk1;Wnk1;Wnk1;Wnk1;Wnk1,0;0;0;0;0;0;0;0;0;-623;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,9,232341,ENSMUSG00000045962,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21214,cg13681420,-0.0000595,0.000012,-4.971549828,0.0000011,loss,yes,-0.0000991,0.0000203,-4.87650361,0.00000173,neg,yes,-0.010594209,0.005953618,-1.779457427,0.076144442,neg,ns,1.118361792,-0.000138733,0.000204744,-0.677591045,0.498536409,neg,ns,0.637733992,Ddx5,Ddx5_threeUTR,11,106783271,106783320,106783319,106783320,50,+,CCAAGAAGCCAGGATTCACTTGAGAATGTGTCTCTCTCTGGCAGGTCTCG,3' UTR,11,106780355,106788532,8178,2,Ddx5-201,5212,Ddx5-201;Ddx5-208;Ddx5-205;Ddx5-207;Ddx5-203;Ddx5-202;Ddx5-209;Ddx5-206;Ddx5-204;Polg2-201;Polg2-203;Polg2-206;Polg2-204;Polg2-202,Ddx5;Ddx5;Ddx5;Ddx5;Ddx5;Ddx5;Ddx5;Ddx5;Ddx5;Polg2;Polg2;Polg2;Polg2;Polg2,0;0;0;0;0;0;2730;0;0;-3756;-3734;-3798;-3798;-3769,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,5,6,13207,ENSMUSG00000020719,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6284,cg18625283,0.0000853,0.0000183,4.661462305,0.00000467,gain,ns,-0.000151182,0.0000311,-4.862810219,0.00000184,neg,yes,0.031390422,0.009108124,3.44642003,0.000646464,pos,ns,3.189455562,0.001136814,0.000313228,3.629353882,0.000332232,pos,ns,0.445635782,Nrn1,Nrn1_fiveUTR,13,36730127,36730176,36730127,36730128,50,+,CGTCTTGTCGTCCAGGCCCTGCGGGTAGTTGGCCATGCTGTCGCCCAGCT,Promoter (<=1kb),13,36725361,36730680,5320,2,Nrn1-204,504,Fars2-211;Nrn1-204;Nrn1-201;Nrn1-203;Nrn1-202;Nrn1-205,Fars2;Nrn1;Nrn1;Nrn1;Nrn1;Nrn1,8201;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,8,9,68404,ENSMUSG00000039114,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22810,cg19641802,0.0000377,0.00003,1.256150913,0.210007092,gain,ns,0.00024776,0.000051,4.858993341,0.00000188,pos,ns,0.041669371,0.014938312,2.789429741,0.005606831,pos,ns,2.251282551,-0.000375439,0.000513727,-0.730813981,0.465444764,neg,ns,0.537077755,Faah,Faah_Intron,4,115972595,115972644,115972643,115972644,50,+,ACAAATGTGGCTGCTGGGGAAAGTGACACGGGCTCCAGGTGATGGATTCG,"Intron (Faah-202/Faah, intron 13 of 14)",4,115967145,116017675,50531,2,Faah-202,45031,Faah-202,Faah,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,20,14073,ENSMUSG00000034171,mapped to different genes,4,115972623,115972781,159,*,159,18,0.666666667,1.042622951,0.113207547,4.61E-15,CpGisland,TRUE,U13,Hc-P
25360,cg16982757,0.000150777,0.0000111,13.6407193,1.65E-33,gain,yes,-0.0000911,0.0000188,-4.852413424,0.00000194,neg,ns,-0.007930584,0.005501412,-1.441554407,0.150437517,neg,ns,0.822643843,0.000772935,0.000189193,4.085431419,0.0000561,pos,ns,0.820082323,Gm9341,Gm9341_Intergenic_downstream,7,135965751,135965800,135965799,135965800,50,+,TGCCTGTGTTTGTCTTTGGCTCTCAGAAGGACAAAATTCACCATGTGGCG,Distal Intergenic,7,135952798,135953783,986,1,Gm9341-201,12953,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,27,28,668764,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2553,cg06012376,-0.00000375,0.0000145,-0.259270395,0.795598705,loss,ns,-0.000119069,0.0000246,-4.849289211,0.00000196,neg,ns,0.030063714,0.007193465,4.179309236,0.0000381,pos,ns,4.419364239,-0.001393167,0.000247383,-5.631625851,0.00000004,neg,yes,0.782477438,Ppp3cb,Ppp3cb_Exon,14,20508641,20508690,20508641,20508642,50,+,CGTCCTCCAGCTAACACTCCACTAGGCAACATCCCTGTGGGAGTCAGGCC,"Exon (Ppp3cb-202/Ppp3cb, exon 12 of 14)",14,20499364,20546573,47210,2,Ppp3cb-202,37883,Ppp3cb-202;Ppp3cb-205;Ppp3cb-201;Ppp3cb-208;Ppp3cb-206;Ppp3cb-207,Ppp3cb;Ppp3cb;Ppp3cb;Ppp3cb;Ppp3cb;Ppp3cb,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,10,19056,ENSMUSG00000021816,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23441,cg11830277,0.0000325,0.0000094,3.454307037,0.000628534,gain,ns,0.0000775,0.000016,4.84780064,0.00000198,pos,ns,0.016376378,0.00468069,3.498710519,0.000535963,pos,ns,3.270865422,-0.000194353,0.000160969,-1.207400561,0.228198329,neg,ns,0.201561466,Gm5672,Gm5672_Intergenic_upstream,14,118436129,118436178,118436177,118436178,50,+,TATTTGAGAGTAAGTAACCATTTAATCTGATGCTAACTGAAAAATCACCG,Distal Intergenic,14,118375261,118376194,934,2,Gm5672-201,-59935,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,9,435422,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
15274,cg01928902,-0.00000114,0.00000834,-0.136591632,0.891442254,loss,ns,0.0000686,0.0000142,4.840705828,0.00000204,pos,ns,0.014393224,0.004152071,3.466517008,0.00060169,pos,ns,3.220627471,-0.000343799,0.000142789,-2.407732908,0.016635781,neg,ns,0.208427413,Zfp36l1,Zfp36l1_Exon,12,80112812,80112861,80112860,80112861,50,-,CCTTTACCTTGCATAAAACTTCGCTCAAGTCGAAGATGGTGGCAGACACG,Promoter (<=1kb),12,80107754,80113013,5260,2,Zfp36l1-201,152,Zfp36l1-201;Zfp36l1-202;Zfp36l1-204;Zfp36l1-203,Zfp36l1;Zfp36l1;Zfp36l1;Zfp36l1,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,8,12192,ENSMUSG00000021127,conserved gene and region,12,80112801,80113026,226,*,226,23,0.654867257,0.949406393,0.101769912,5.06E-18,CpGisland,TRUE,U1,Pr-A
26825,cg00857814,0.000178203,0.0000106,16.75964292,2.48E-45,gain,yes,-0.0000874,0.0000181,-4.839850792,0.00000205,neg,ns,0.01195847,0.005292095,2.259685457,0.024534724,pos,ns,1.610218819,-0.000637031,0.000181995,-3.500274869,0.000532947,neg,ns,0.495475954,Smg7,Smg7_Exon,1,152845418,152845467,152845418,152845419,50,+,CGTTGCTGGCTGTAAGGAATGTGGGACTGTTTCCCAGCTTGCACCTGGTT,"Exon (Smg7-202/Smg7, exon 16 of 22)",1,152836995,152902622,65628,2,Smg7-202,57155,Smg7-202;Smg7-201;Smg7-203;Smg7-204;Smg7-205;Smg7-206,Smg7;Smg7;Smg7;Smg7;Smg7;Smg7,0;0;0;0;0;3453,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,7,226517,ENSMUSG00000042772,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4424,cg26282474,0.0000965,0.00000805,11.98207519,1.92E-27,gain,yes,-0.0000661,0.0000137,-4.833712612,0.00000211,neg,ns,-0.010576461,0.004008835,-2.638288016,0.008753228,neg,ns,2.05783178,0.00031958,0.000137864,2.318089786,0.021095014,pos,ns,0.827262941,Ddx31,Ddx31_Intron,2,28885202,28885251,28885202,28885203,50,+,CGGTCCTGGCTGCCCGGCTTTCAATATTGCTTTGACAACCATTCTGCCCT,"Intron (Ddx31-201/Ddx31, intron 17 of 19)",2,28840459,28905571,65113,1,Ddx31-201,44743,Ddx31-201,Ddx31,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,5,227674,ENSMUSG00000026806,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8248,cg15777606,0.0000277,0.00000854,3.244205749,0.001306362,gain,ns,-0.0000701,0.0000145,-4.833004812,0.00000212,neg,ns,0.024468013,0.004248124,5.759721846,2.03E-08,pos,ns,7.692636736,-0.00078143,0.000146093,-5.348864003,0.000000172,neg,yes,0.674178642,Jarid2,Jarid2_Exon,13,44902430,44902479,44902478,44902479,50,-,GTCAACCACACAATCTCAGGGAAAACTGAAAGTAGCAATGCAAAAACCCG,"Exon (Jarid2-210/Jarid2, exon 8 of 19)",13,44730774,44920108,189335,1,Jarid2-210,171656,Jarid2-210;Jarid2-201;Jarid2-209;Jarid2-208;Jarid2-216;Jarid2-211,Jarid2;Jarid2;Jarid2;Jarid2;Jarid2;Jarid2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,21,16468,ENSMUSG00000038518,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11410,cg10839068,0.0000145,0.0000134,1.076844587,0.28238699,gain,ns,0.000110245,0.0000228,4.826807704,0.00000218,pos,ns,0.023469245,0.006691374,3.507387791,0.000519433,pos,ns,3.284470164,-0.000419248,0.000230116,-1.821898731,0.069433847,neg,ns,0.54926047,Zic3,Zic3_Exon,X,58034495,58034544,58034543,58034544,50,+,TAGCACCAGCCACAACCCTGGACTTCCTCCTAATTTTAACGAATGGTACG,"Exon (Zic3-201/Zic3, exon 3 of 3)",20,58030643,58036559,5917,1,Zic3-201,3852,Zic3-204;Zic3-201;Zic3-203;Zic3-202,Zic3;Zic3;Zic3;Zic3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,17,22773,ENSMUSG00000067860,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
14743,cg02171705,0.0000112,0.0000104,1.080045673,0.2809614,gain,ns,0.000085,0.0000176,4.824845817,0.0000022,pos,ns,0.022467177,0.005162177,4.352267596,0.0000183,pos,ns,4.737107382,-0.000463807,0.000177527,-2.612603673,0.00942336,neg,ns,0.131176408,Tbl1x,Tbl1x_Promoter,X,77509265,77509314,77509313,77509314,50,+,TGATGTCAACTTGTTATTTACTTTCCAAATCTGAATGACTGAGCAAGGCG,Promoter (1-2kb),20,77511013,77662983,151971,1,Tbl1x-201,-1699,Tbl1x-201;Tbl1x-202,Tbl1x;Tbl1x,-1699;-1900,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,2,21372,ENSMUSG00000025246,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3294,cg18230121,-0.0000537,0.0000125,-4.29170823,0.0000237,loss,ns,0.000102595,0.0000213,4.823905794,0.00000221,pos,ns,0.013938408,0.006230813,2.237012788,0.025996146,pos,ns,1.58509104,-0.000459265,0.000214277,-2.143321344,0.032865317,neg,ns,0.686546049,Gm11889,Gm11889_Intergenic_downstream,4,23505166,23505215,23505166,23505167,50,+,CGATATTATTGTTGACTGTGCTAATAAAACACCTCCCGTGACCCTGATGC,Distal Intergenic,4,23517362,23518440,1079,2,Gm11889-201,13225,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,8,383998,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1112,cg10340181,0.0000354,0.000013,2.71511195,0.006996652,gain,ns,0.00010676,0.0000221,4.821687696,0.00000223,pos,ns,0.034616806,0.006486717,5.336567779,0.000000183,pos,ns,6.736954992,-0.000881687,0.000223078,-3.952376756,0.0000959,neg,ns,0.35945877,Gm14515,Gm14515_Intergenic_downstream,X,11631301,11631350,11631349,11631350,50,+,AGAAAATGCGTTGATTCACTCCCAAATCTGCTTTGCCCAAGCCGGGTGCG,Distal Intergenic,20,11601354,11601569,216,1,Gm14515-201,29947,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,28,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17127,cg21960772,0.0000386,0.0000105,3.684599543,0.000270255,gain,ns,-0.0000858,0.0000178,-4.818958587,0.00000226,neg,ns,0.021569224,0.005218101,4.133539039,0.000046,pos,ns,4.337012272,-0.000751391,0.00017945,-4.187189855,0.0000368,neg,ns,0.746160179,Ubqln4,Ubqln4_Exon,3,88563286,88563335,88563286,88563287,50,+,CGACAGTCTCGAACCCCTTTGGGATCAATGCGGCTAGCCTGGGGTCAGGT,"Exon (Ubqln4-201/Ubqln4, exon 6 of 11)",3,88553758,88569725,15968,1,Ubqln4-201,9528,Ubqln4-201;Ubqln4-204;Ubqln4-202;Ubqln4-205,Ubqln4;Ubqln4;Ubqln4;Ubqln4,0;0;0;-572,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,94232,ENSMUSG00000008604,conserved gene and region,3,88563137,88563317,181,*,181,12,0.674033149,0.607212748,0.066298343,0.0000002,CpGisland,TRUE,U10,Tr-S
27581,cg20512638,-0.00000448,0.00000459,-0.977228734,0.3292179,loss,ns,0.0000375,0.00000779,4.818627609,0.00000227,pos,ns,0.008948659,0.002282179,3.921102198,0.000108551,pos,ns,3.9643658,-0.0001948,0.0000785,-2.482032763,0.013592918,neg,ns,0.918128839,Tshz2,Tshz2_threeUTR,2,170071378,170071427,170071426,170071427,50,+,ACGTAAAAATTCCAATAGAACTGTATTAGATTTTCTCCATTAAATTAACG,3' UTR,2,169884893,170071816,186924,1,Tshz2-203,186485,Tshz2-203;Tshz2-205,Tshz2;Tshz2,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,8,30,228911,ENSMUSG00000047907,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27382,cg15444935,-0.0000526,0.0000114,-4.632175909,0.00000533,loss,ns,-0.0000929,0.0000193,-4.815210408,0.0000023,neg,ns,0.049299264,0.005652411,8.721812012,1.70E-16,pos,yes,15.76904107,-0.001512692,0.000194386,-7.781900982,1.07E-13,neg,yes,0.788561999,Pou2f1,Pou2f1_Exon,1,165902162,165902211,165902162,165902163,50,-,CGTCTTTGTTTGAAGGTCTTGGCAAACTGCTCAAGCTCCTCAAGGTCACT,"Exon (Pou2f1-205/Pou2f1, exon 9 of 17)",1,165865154,165934948,69795,2,Pou2f1-205,32737,Pou2f1-205;Pou2f1-208;Pou2f1-207;Pou2f1-206;Pou2f1-216;Pou2f1-209;Pou2f1-204;Pou2f1-201;Pou2f1-202;Pou2f1-213;Pou2f1-203;Pou2f1-215,Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,18,18986,ENSMUSG00000026565,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27150,cg08071218,-0.0000172,0.000012,-1.426502879,0.154729557,loss,ns,0.0000984,0.0000204,4.815163034,0.0000023,pos,ns,0.016703348,0.005987163,2.789860455,0.005599563,pos,ns,2.251845851,-0.000563206,0.000205898,-2.735366039,0.00658994,neg,ns,0.527215419,Tnr,Tnr_Intron,1,159578487,159578536,159578487,159578488,50,-,CGAGGCCAATAAAGGCAATGAGAGGCAAGGTTATTGATGTCTGTCTGAGG,"Intron (Tnr-202/Tnr, intron 1 of 22)",1,159523769,159931729,407961,1,Tnr-202,54718,Tnr-202;Tnr-205,Tnr;Tnr,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,13,21960,ENSMUSG00000015829,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5983,cg02458378,-0.0000354,0.0000125,-2.843408835,0.00475982,loss,ns,-0.000101909,0.0000212,-4.812666712,0.00000233,neg,ns,-0.006642392,0.006203603,-1.070731334,0.285123174,neg,ns,0.544967482,-0.000529832,0.000213341,-2.483494991,0.01353835,neg,ns,0.518173739,Ddr1,Ddr1_Exon,17,35686483,35686532,35686531,35686532,50,+,TGGGTGTTGGTGGGTTTGGCCCAGGCGGGTGTGGGGGGGCCCGGGCCTCG,"Exon (Ddr1-204/Ddr1, exon 12 of 18)",17,35681567,35700610,19044,2,Ddr1-204,14078,Ddr1-204;Ddr1-203;Ddr1-212;Ddr1-202;Ddr1-201;Ddr1-211;Ddr1-210;Ddr1-209;Ddr1-205;Ddr1-208;Ddr1-207,Ddr1;Ddr1;Ddr1;Ddr1;Ddr1;Ddr1;Ddr1;Ddr1;Ddr1;Ddr1;Ddr1,0;0;0;0;0;0;0;17445;18089;11439;15514,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,12305,ENSMUSG00000003534,conserved gene and region,17,35686508,35686619,112,*,112,10,0.714285714,0.903954802,0.089285714,0.000000188,CpGisland,TRUE,U11,Tr-P
1607,cg15931112,0.00000583,0.0000101,0.578292718,0.563486371,gain,ns,0.0000824,0.0000171,4.812941114,0.00000233,pos,ns,0.019401287,0.005015716,3.868099522,0.000133702,pos,ns,3.873863424,-0.000443651,0.00017249,-2.572038118,0.010575724,neg,ns,0.448276386,Cask,Cask_Intron,X,13845267,13845316,13845315,13845316,50,+,ATGAAAGGATGAGCATTTGGACTGTCAGTTCTATATTCTAGACCAGCCCG,"Intron (Cask-203/Cask, intron 1 of 24)",20,13517080,13846541,329462,2,Cask-203,1225,Cask-203;Cask-204;Cask-201;Cask-210;Cask-205;Cask-208;Cask-211,Cask;Cask;Cask;Cask;Cask;Cask;Cask,0;0;0;0;0;0;1419,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,9,12361,ENSMUSG00000031012,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25599,cg23102356,-0.0000499,0.00000964,-5.177189066,0.000000406,loss,yes,0.0000787,0.0000164,4.806826219,0.00000239,pos,ns,0.011474675,0.004797954,2.391576979,0.017372005,pos,ns,1.760150047,-0.000358169,0.000165001,-2.17070575,0.030712084,neg,ns,0.674058518,Ebf3,Ebf3_Intron,7,137303022,137303071,137303022,137303023,50,+,CGGCATTAGGCCCAAATTACACGATATTAATACTTGAACAGGTGCAGAAA,"Intron (Ebf3-204/Ebf3, intron 6 of 15)",7,137193673,137314445,120773,2,Ebf3-204,11374,Ebf3-204;Ebf3-201;Ebf3-202;Ebf3-203;Ebf3-208;Ebf3-206,Ebf3;Ebf3;Ebf3;Ebf3;Ebf3;Ebf3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,62,84,13593,ENSMUSG00000010476,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
2962,cg25463057,-0.00000396,0.00000501,-0.790844026,0.429639624,loss,ns,0.0000409,0.00000852,4.807614856,0.00000239,pos,ns,0.006252828,0.002495331,2.505810681,0.012729357,pos,ns,1.895193532,-0.0000514,0.0000858,-0.599361028,0.549369939,neg,ns,0.918890552,Lrmda,Lrmda_Intron,14,22176356,22176405,22176404,22176405,50,-,TAGGTTGTTTGTCTCTGCTGCTGACTAACCATGCAATCTATCAGAGGCCG,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,156644,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206,Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11460,cg06275769,-0.000005,0.0000108,-0.462368454,0.644141468,loss,ns,-0.0000882,0.0000184,-4.803169773,0.00000244,neg,ns,0.031252425,0.005379198,5.809866675,1.55E-08,pos,ns,7.809543026,-0.001084818,0.00018499,-5.864192558,1.16E-08,neg,yes,0.854568483,Hnrnpk,Hnrnpk_fiveUTR,13,58397765,58397814,58397813,58397814,50,+,CTGCTGTCTGGGACTGAAACACTGGCATTGTACTGCATTGGTCATTGGCG,5' UTR,13,58391142,58403343,12202,2,Hnrnpk-202,5529,Hnrnpk-202;Hnrnpk-224;Hnrnpk-221;Hnrnpk-232;Hnrnpk-216;Hnrnpk-201;Hnrnpk-205;Hnrnpk-217;Hnrnpk-206;Hnrnpk-209;Hnrnpk-213;Hnrnpk-227;Hnrnpk-234;Hnrnpk-233;Hnrnpk-228;Hnrnpk-214;Hnrnpk-215;Hnrnpk-211;Hnrnpk-208;Hnrnpk-212;Hnrnpk-231;Hnrnpk-230;Hnrnpk-203;Hnrnpk-218;Hnrnpk-226;Hnrnpk-207;Hnrnpk-219;Hnrnpk-225;Hnrnpk-229;Hnrnpk-223;Hnrnpk-220;Hnrnpk-210;Hnrnpk-204;Hnrnpk-222;Rmi1-205;Rmi1-201;Rmi1-204,Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Rmi1;Rmi1;Rmi1,0;0;0;0;0;0;0;-3897;-2980;-3790;-2567;-3681;-3876;-3595;-3069;0;-2045;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;4688;4241;-4434;-4449;-4886,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,10,19,15387,ENSMUSG00000021546,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3285,cg19192708,-0.0000334,0.00000616,-5.420033402,0.00000012,loss,yes,0.0000502,0.0000105,4.800531262,0.00000247,pos,ns,0.011830524,0.003064852,3.860063698,0.000137966,pos,ns,3.860228852,-0.000329181,0.0001054,-3.12315705,0.001958146,neg,ns,0.84821459,Cadps2,Cadps2_Intron,6,23464398,23464447,23464398,23464399,50,+,CGATTCTCAATATGTAATCAAAAATTATGGCTGGAAGTGTTTCACAATGT,"Intron (Cadps2-213/Cadps2, intron 9 of 29)",6,23262773,23839137,576365,2,Cadps2-213,374690,Cadps2-213;Cadps2-205;Cadps2-212;Cadps2-201;Cadps2-209;Cadps2-206;Cadps2-207;Cadps2-202;Cadps2-204,Cadps2;Cadps2;Cadps2;Cadps2;Cadps2;Cadps2;Cadps2;Cadps2;Cadps2,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,15,320405,ENSMUSG00000017978,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6362,cg13193974,0.0000188,0.000003,6.273227015,1.19E-09,gain,yes,-0.0000245,0.0000051,-4.799591,0.00000248,neg,ns,0.007034108,0.001495536,4.70340271,0.00000386,pos,ns,5.413625207,-0.000233532,0.0000514,-4.540656503,0.00000804,neg,ns,0.924035374,Hdac2,Hdac2_Exon,10,36997078,36997127,36997078,36997079,50,-,CGATGTTGGACATATGAGACTGCAGTTGCCCTTGATTGTGAGATTCCCAA,"Exon (Hdac2-201/Hdac2, exon 9 of 14)",10,36974544,37001889,27346,1,Hdac2-201,22534,Hdac2-201;Hdac2-202;Hdac2-204;Hdac2-203,Hdac2;Hdac2;Hdac2;Hdac2,0;22508;0;-1045,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,15182,ENSMUSG00000019777,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22191,cg03039483,0.0000134,0.0000141,0.945648182,0.345064546,gain,ns,0.00011494,0.000024,4.785932729,0.00000264,pos,ns,0.026312758,0.007035909,3.739780749,0.000219342,pos,ns,3.658877324,-0.000393277,0.000241964,-1.625352981,0.105103541,neg,ns,0.401249708,Hdx,Hdx_fiveUTR,X,111697069,111697118,111697117,111697118,50,+,CTTCAGACAATGAAATCAGCGTGTCCGATCATCAATTCTCATCATGATCG,Promoter (<=1kb),20,111569931,111697079,127149,2,Hdx-202,0,Hdx-202;Hdx-201,Hdx;Hdx,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,8,245596,ENSMUSG00000034551,conserved gene but different region,X,111697031,111697165,135,*,135,10,0.533333333,1.062155783,0.074074074,0.00000108,CpGisland,TRUE,NA,NRS
2278,cg05563253,-0.0000355,0.0000134,-2.65387671,0.008367678,loss,ns,-0.000108776,0.0000227,-4.781560521,0.00000269,neg,ns,0.047047813,0.006664692,7.059262621,1.10E-11,pos,yes,10.95769329,-0.001282699,0.000229198,-5.596461078,4.82E-08,neg,yes,0.48289483,Gm28539,Gm28539_threeUTR,16,18896673,18896722,18896673,18896674,50,+,CGGCCTGCTGTCTGAAGGCACAGATGTTGGCTGCACACCTGGGTGAGTTA,3' UTR,16,18836584,18956247,119664,1,Gm28539-201,60089,Gm28539-201;Hira-202;Hira-201;Hira-206;Hira-208;Hira-203,Gm28539;Hira;Hira;Hira;Hira;Hira,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12156,cg19705440,-0.0000117,0.0000138,-0.84663299,0.397852809,loss,ns,0.000112145,0.0000235,4.781017916,0.0000027,pos,ns,0.018444072,0.006871928,2.683973559,0.007666218,pos,ns,2.115418833,-0.000173913,0.000236325,-0.735906538,0.462344029,neg,ns,0.290956745,Skor1,Skor1_Promoter,9,63152069,63152118,63152069,63152070,50,+,CGGCAGTTTTCGTCAGTTAATTAGGTTTAATTTACATAATTAGTACAGTA,Promoter (3-4kb),9,63138170,63148961,10792,2,Skor1-202,-3108,Skor1-202,Skor1,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,6,15,207667,ENSMUSG00000022245,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
4882,cg10340825,-0.0000152,0.00000446,-3.422088777,0.000704837,loss,ns,-0.0000362,0.00000757,-4.778958996,0.00000273,neg,ns,0.003462403,0.002217569,1.5613509,0.119461236,pos,ns,0.922772998,-0.000465415,0.0000763,-6.102843255,3.11E-09,neg,yes,0.772118577,Aplp2,Aplp2_Exon,9,31152330,31152379,31152378,31152379,50,-,CTCCAACTCTCTCGGCATTGAAAATCATTTCCTTAACATCCAGAGTCTCG,"Exon (Aplp2-209/Aplp2, exon 14 of 16)",9,31149557,31211787,62231,2,Aplp2-209,59408,Aplp2-209;Aplp2-201;Aplp2-202;Aplp2-207;Aplp2-205;Aplp2-203,Aplp2;Aplp2;Aplp2;Aplp2;Aplp2;Aplp2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,11804,ENSMUSG00000031996,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22172,cg01914744,-0.00000613,0.00000495,-1.239847507,0.215969506,loss,ns,-0.0000401,0.0000084,-4.773520988,0.00000279,neg,ns,0.01007844,0.002462088,4.093452328,0.0000543,pos,ns,4.265485318,-0.000301285,0.0000847,-3.558296947,0.000431684,neg,ns,0.924822151,Eif5,Eif5_threeUTR,12,111540220,111540269,111540220,111540221,50,-,CGAATAAGCTGCAAGACATGTTGGATGGATTCATTAAAAAATTTGTTCTC,3' UTR,12,111538016,111546752,8737,1,Eif5-202,2204,Eif5-202;Eif5-214;Eif5-209;Eif5-204;Eif5-212;Eif5-213;Eif5-207;Eif5-210;Eif5-201;Eif5-203;Eif5-208;Eif5-211;Eif5-215;Eif5-217;Eif5-216;Eif5-205;Eif5-206,Eif5;Eif5;Eif5;Eif5;Eif5;Eif5;Eif5;Eif5;Eif5;Eif5;Eif5;Eif5;Eif5;Eif5;Eif5;Eif5;Eif5,0;0;2004;0;0;0;0;0;0;0;0;0;0;0;0;-1956;-2562,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,threeUTR,2,3,217869,ENSMUSG00000021282,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24492,cg21299339,0.0000209,0.0000182,1.147054665,0.25224355,gain,ns,0.00014743,0.0000309,4.773777493,0.00000279,pos,ns,0.006246753,0.009047751,0.690420588,0.490446323,pos,ns,0.309408517,0.0000353,0.000311151,0.113565086,0.909656076,pos,ns,0.712834525,Kcna1,Kcna1_Exon,6,126642146,126642195,126642146,126642147,50,+,CGGGCAGGGCAATTGTTAGCACACCAGCGATGGCACACAAGGAGCCCACG,"Exon (Kcna1-201/Kcna1, exon 2 of 2)",6,126640397,126644796,4400,2,Kcna1-201,2601,Kcna1-201;Kcna1-202;Kcna1-203,Kcna1;Kcna1;Kcna1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,12,16485,ENSMUSG00000047976,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
6286,cg14004899,0.0000624,0.0000217,2.877269801,0.004289692,gain,ns,-0.000175733,0.0000368,-4.769860929,0.00000284,neg,ns,0.027508612,0.010793561,2.548613273,0.011297096,pos,ns,1.947033175,0.001592788,0.00037119,4.291035444,0.0000238,pos,ns,0.385367804,Nrn1,Nrn1_fiveUTR,13,36730120,36730169,36730168,36730169,50,+,TGATGTTCGTCTTGTCGTCCAGGCCCTGCGGGTAGTTGGCCATGCTGTCG,Promoter (<=1kb),13,36725361,36730680,5320,2,Nrn1-204,511,Fars2-211;Nrn1-204;Nrn1-201;Nrn1-203;Nrn1-202;Nrn1-205,Fars2;Nrn1;Nrn1;Nrn1;Nrn1;Nrn1,8194;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,8,9,68404,ENSMUSG00000039114,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9831,cg15667675,0.0000332,0.0000107,3.112615347,0.002027218,gain,ns,0.0000865,0.0000181,4.768044167,0.00000287,pos,ns,0.026712661,0.005314597,5.026282019,0.000000847,pos,ns,6.072123785,-0.000551996,0.000182769,-3.020191781,0.002736263,neg,ns,0.20499611,Rap2c,Rap2c_Exon,X,51017766,51017815,51017766,51017767,50,+,CGATCTCTTTGCGGTAGAAATCTTCAATGGTGGGGTCATATTTCTCAATG,Promoter (<=1kb),20,51003912,51018018,14107,2,Rap2c-201,203,Rap2c-201,Rap2c,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,6,72065,ENSMUSG00000050029,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
14611,cg15903069,0.0000538,0.0000127,4.230011936,0.0000308,gain,ns,0.000102931,0.0000216,4.764739768,0.00000291,pos,ns,0.006224111,0.006328837,0.98345249,0.326151705,pos,ns,0.486580347,0.000367664,0.000217648,1.689258259,0.092175395,pos,ns,0.204286387,Skor2,Skor2_Intergenic_upstream,18,76845758,76845807,76845758,76845759,50,+,CGTAGAGGCAATGTGTTTACCACATTGTAATTGAACTCATTAGGGCTATG,Distal Intergenic,18,76856405,76900342,43938,1,Skor2-201,-10598,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,7,664805,ENSMUSG00000091519,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
26487,cg19261871,0.0000115,0.00000692,1.659349508,0.09805666,gain,ns,0.000056,0.0000118,4.763049063,0.00000293,pos,ns,0.003391535,0.0034464,0.984080649,0.325843276,pos,ns,0.486991237,0.0000442,0.000118521,0.372984759,0.709414689,pos,ns,0.830491652,Casz1,Casz1_Intergenic_upstream,4,148778369,148778418,148778417,148778418,50,-,TTTATGATTTGTCCCTCGTTTGATGAGCATCTCTCCCATCAATTGTGCCG,Distal Intergenic,4,148804429,148954889,150461,1,Casz1-202,-26060,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,14,124,69743,ENSMUSG00000028977,mapped to different genes,4,148778336,148778496,161,*,161,13,0.546583851,1.101578947,0.080745342,4.82E-09,CpGisland,TRUE,NA,NRS
2178,cg18754842,0.00000419,0.00000563,0.744992902,0.456840436,gain,ns,-0.0000455,0.00000956,-4.759564763,0.00000298,neg,ns,0.004104293,0.002801493,1.465037859,0.143924029,pos,ns,0.841866692,-0.000244784,0.0000963,-2.540753821,0.011548786,neg,ns,0.878152344,Kdm6a,Kdm6a_threeUTR,X,18278742,18278791,18278742,18278743,50,+,CGTAAGGCTGCTGGCTGAAAACTGTGTCTATGCAACCTTCCAAGTGCGGA,3' UTR,20,18162575,18279936,117362,1,Kdm6a-201,116167,Kdm6a-201;Kdm6a-202;Kdm6a-208;Kdm6a-204,Kdm6a;Kdm6a;Kdm6a;Kdm6a,0;0;0;4230,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,7,14,22289,ENSMUSG00000037369,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22603,cg19369305,-0.000104634,0.0000183,-5.719984987,2.51E-08,loss,yes,0.000147769,0.0000311,4.754970644,0.00000304,pos,ns,0.032825246,0.009104425,3.605416827,0.00036304,pos,ns,3.440045825,-0.00101635,0.0003131,-3.246082267,0.001298065,neg,ns,0.435083133,BC052040,BC052040_Intergenic_upstream,2,115384960,115385009,115384960,115384961,50,-,CGTTTAAGCCAAATCATTTTGGACTGTGAAAAGAGCCCTGAGTGGTGGAT,Distal Intergenic,2,115581716,115778768,197053,1,BC052040-203,-196756,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,9,49,399568,ENSMUSG00000040282,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5154,cg11868140,0.00000837,0.00000348,2.406499958,0.01669098,gain,ns,-0.0000281,0.00000591,-4.753595366,0.00000306,neg,ns,-0.007332509,0.001730444,-4.237356481,0.0000299,neg,ns,4.524851337,0.000135615,0.0000595,2.27886304,0.023354956,pos,ns,0.898987645,Mfn1,Mfn1_Exon,3,32561460,32561509,32561460,32561461,50,+,CGCAGGAGTGTATCTCGCAGTCAGCAGTGAAAACAAAGTTCGAACAGCAC,"Exon (Mfn1-201/Mfn1, exon 10 of 18)",3,32529465,32579239,49775,1,Mfn1-201,31995,Mfn1-201;Mfn1-202;Mfn1-205;Mfn1-209;Mfn1-207;Mfn1-208,Mfn1;Mfn1;Mfn1;Mfn1;Mfn1;Mfn1,0;0;0;0;-37;-1399,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,67414,ENSMUSG00000027668,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2013,cg25317453,0.0000532,0.0000118,4.510328231,0.0000092,gain,ns,-0.0000953,0.00002,-4.751960221,0.00000309,neg,ns,-0.014697916,0.005873319,-2.502488986,0.012846985,neg,ns,1.891198773,-0.000880356,0.000201983,-4.358565245,0.0000178,neg,ns,0.388319068,Tes,Tes_Intron,6,17143169,17143218,17143217,17143218,50,-,TAAGGTCACAAGACAGACAGTTCTTTCTTGATTACTCAAACAAATACACG,"Intron (Gm4876-204/Gm4876-204, intron 1 of 1)",6,17065224,17105828,40605,1,Tes-201,77994,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,2,21753,ENSMUSG00000029552,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
192,cg19721103,0.00013833,0.0000182,7.592793869,3.71E-13,gain,yes,-0.000147049,0.000031,-4.751055342,0.0000031,neg,ns,0.06868581,0.009067568,7.574888042,4.17E-13,pos,yes,12.37977696,-0.001845965,0.000311833,-5.919725938,8.54E-09,neg,yes,0.547715325,Ascc2,Ascc2_Exon,11,4646604,4646653,4646652,4646653,50,-,CCGCCCCCTAAAGACAACATTCCCGCCCTAGTGGAGGAGTACCTGGAACG,"Exon (Ascc2-201/Ascc2, exon 3 of 20)",11,4637747,4683385,45639,1,Ascc2-201,8857,Ascc2-201;Ascc2-202,Ascc2;Ascc2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,9,75452,ENSMUSG00000020412,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13470,cg02353150,0.00000386,0.00000243,1.590235981,0.112800876,gain,ns,-0.0000196,0.00000412,-4.748461299,0.00000314,neg,ns,-0.002230221,0.001207988,-1.846227111,0.0658124,neg,ns,1.181692269,-0.0000324,0.0000415,-0.779612055,0.43621404,neg,ns,0.934414612,Xpo7,Xpo7_Intron,14,70683986,70684035,70684034,70684035,50,+,CTGGGGCACTCCAGGGCTGATTTCTGCAGCAAGGGTAAGAGATTTCTGCG,"Intron (Xpo7-202/Xpo7, intron 15 of 27)",14,70654246,70766628,112383,2,Xpo7-202,82593,Xpo7-202;Xpo7-201;Xpo7-206;Xpo7-203;Xpo7-204;Xpo7-205,Xpo7;Xpo7;Xpo7;Xpo7;Xpo7;Xpo7,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,13,65246,ENSMUSG00000022100,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20811,cg19101845,-0.000110318,0.0000186,-5.941882131,7.57E-09,loss,yes,0.000149737,0.0000315,4.747314032,0.00000315,pos,ns,-0.011147551,0.009240554,-1.206372626,0.228593684,neg,ns,0.640935773,0.000593157,0.000317782,1.866553597,0.062907917,pos,ns,0.522758142,Kcnd3,Kcnd3_Promoter,3,105449867,105449916,105449867,105449868,50,-,CGACAAGCTCCCAAATTAGCTTTTTAAATAGAAGCTGAGAGTTAAAGGAA,Promoter (2-3kb),3,105452330,105674002,221673,1,Kcnd3-202,-2463,Kcnd3-202;Kcnd3-204;Kcnd3-203,Kcnd3;Kcnd3;Kcnd3,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,1,9,56543,ENSMUSG00000040896,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
5787,cg13304807,0.0000386,0.00000667,5.787520327,1.75E-08,gain,yes,-0.0000537,0.0000113,-4.740456571,0.00000326,neg,ns,0.037007211,0.003319944,11.14693855,1.72E-24,pos,yes,23.76504882,-0.001535952,0.000114173,-13.45289138,8.25E-33,neg,yes,0.868990052,Cald1,Cald1_threeUTR,6,34771078,34771127,34771078,34771079,50,+,CGGAACCTCTGGGAAAAGCAATCTGTGGATAAGGTCACTTCCCCCACTAA,3' UTR,6,34598500,34775454,176955,1,Cald1-202,172578,Cald1-202;Cald1-205;Cald1-204;Cald1-203;Cald1-214;Cald1-201;Cald1-218;Cald1-209,Cald1;Cald1;Cald1;Cald1;Cald1;Cald1;Cald1;Cald1,0;0;0;0;0;0;8218;6122,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,109624,ENSMUSG00000029761,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
840,cg20096021,-0.0000213,0.000016,-1.333337706,0.183399942,loss,ns,0.000128789,0.0000272,4.739660903,0.00000327,pos,ns,0.019115625,0.007960645,2.401265845,0.016927114,pos,ns,1.771417084,-0.000314605,0.000273766,-1.14917535,0.251369543,neg,ns,0.309980407,Nxph1,Nxph1_Exon,6,8952269,8952318,8952317,8952318,50,+,GGAGCATTTGAAAACCATTCAGTGTGCAAATTATGCTGATTCAATTACCG,"Exon (Nxph1-203/Nxph1, exon 3 of 3)",6,8948431,8952430,4000,1,Nxph1-203,3838,Nxph1-203;Nxph1-202;Nxph1-201,Nxph1;Nxph1;Nxph1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,12,18231,ENSMUSG00000046178,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
26957,cg11134207,0.0000521,0.00000498,10.47215427,3.59E-22,gain,yes,-0.0000401,0.00000846,-4.738592314,0.00000328,neg,ns,0.013350646,0.002478296,5.387027011,0.000000142,pos,ns,6.847979072,-0.000567151,0.0000852,-6.654485264,1.29E-10,neg,yes,0.789316486,Acss2,Acss2_threeUTR,2,155561766,155561815,155561814,155561815,50,-,ATTGCCACACCAGACTACATCCAGAATGCACCTGGCTTGCCTAAAACCCG,3' UTR,2,155517948,155562746,44799,1,Acss2-201,43818,Acss2-201;Acss2-202;Acss2-203;Acss2-205;Acss2-209;Gss-201;Gss-203;Gss-208;Gss-205,Acss2;Acss2;Acss2;Acss2;Acss2;Gss;Gss;Gss;Gss,0;0;0;0;12534;30995;30899;11189;12568,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,60525,ENSMUSG00000027605,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17395,cg11129543,-0.0000373,0.00000401,-9.31716624,2.30E-18,loss,yes,-0.0000323,0.00000681,-4.736513488,0.00000331,neg,ns,-0.001974654,0.001995104,-0.98975027,0.323068088,neg,ns,0.490705939,-0.00000775,0.0000686,-0.112923945,0.910163943,neg,ns,0.86173509,Ubap2l,Ubap2l_Exon,3,90038805,90038854,90038853,90038854,50,-,CATTACTGACCCACAGCTGGTTTTGATAAAGCCCCATGCATACACTCTCG,"Exon (Ubap2l-215/Ubap2l, exon 5 of 27)",3,90000140,90052455,52316,2,Ubap2l-215,13601,Ubap2l-215;Ubap2l-201;Ubap2l-202;Ubap2l-208;Ubap2l-203;Ubap2l-204;Ubap2l-220;Ubap2l-205;Ubap2l-216;Ubap2l-206;Ubap2l-214;Ubap2l-213;Ubap2l-221,Ubap2l;Ubap2l;Ubap2l;Ubap2l;Ubap2l;Ubap2l;Ubap2l;Ubap2l;Ubap2l;Ubap2l;Ubap2l;Ubap2l;Ubap2l,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,15,74383,ENSMUSG00000042520,conserved gene and region,3,90038853,90038926,74,*,74,8,0.675675676,1.027777778,0.108108108,0.0000012,CpGisland,TRUE,U10,Tr-S
14911,cg04398268,-0.0000675,0.00000978,-6.896322411,3.00E-11,loss,yes,-0.0000787,0.0000166,-4.735632744,0.00000333,neg,ns,0.029835631,0.004868537,6.128253793,2.70E-09,pos,ns,8.569415942,-0.001462645,0.000167429,-8.73593373,1.54E-16,neg,yes,0.836824829,Fam222b,Fam222b_fiveUTR,11,78153930,78153979,78153978,78153979,50,+,AAAGTGCCAGCCAAAAGCATACTCAAGGACTTTGACGGCACCCGAGCCCG,5' UTR,11,78094660,78156700,62041,1,Fam222b-201,59270,Fam222b-201;Fam222b-202;Fam222b-203;Gm12571-201;Traf4-203,Fam222b;Fam222b;Fam222b;Gm12571;Traf4,0;0;0;-4492;11610,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,10,21,216971,ENSMUSG00000037750,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
664,cg15958715,0.0000672,0.0000078,8.626636174,3.34E-16,gain,yes,0.0000627,0.0000132,4.733788138,0.00000336,pos,ns,0.022079996,0.003879926,5.690829841,2.93E-08,pos,ns,7.533272121,-0.00049018,0.00013343,-3.6736749,0.000281573,neg,ns,0.476509831,Ppp1r3f,Ppp1r3f_Exon,X,7573420,7573469,7573468,7573469,50,-,CGTGGTTGTTGGCCCAGAAAGTGCCCTCAGGGGTCTCATAGCGCACCACG,Promoter (<=1kb),20,7557296,7574283,16988,2,Ppp1r3f-205,814,Foxp3-209;Ppp1r3f-205;Ppp1r3f-201;Ppp1r3f-203,Foxp3;Ppp1r3f;Ppp1r3f;Ppp1r3f,-175;0;0;-577,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,8,54646,ENSMUSG00000039556,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
499,cg25409637,0.0000766,0.0000101,7.569540074,4.32E-13,gain,yes,-0.0000814,0.0000172,-4.733583621,0.00000336,neg,ns,0.015029445,0.005037956,2.983242609,0.003078631,pos,ns,2.511642349,-0.00039943,0.000173255,-2.305450044,0.021801369,neg,ns,0.604538987,Celf2,Celf2_Exon,2,6604116,6604165,6604164,6604165,50,+,GGAGGCGCCTTTGCTCTTTGTCCTTCTGAGTGTCAGCAAACTTCACCACG,"Exon (Celf2-201/Celf2, exon 9 of 16)",2,6539694,7396000,856307,2,Celf2-201,791835,Celf2-201;Celf2-202;Celf2-204;Celf2-214;Celf2-206;Celf2-226;Celf2-223;Celf2-224;Celf2-221;Celf2-205;Celf2-211;Celf2-213;Celf2-225;Celf2-228;Celf2-217;Celf2-227;Celf2-212;Celf2-210,Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,24,14007,ENSMUSG00000002107,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2636,cg25824158,-0.000309233,0.0000252,-12.28795612,1.53E-28,loss,yes,-0.000202148,0.0000428,-4.728293753,0.00000344,neg,ns,0.082806579,0.012525145,6.611227266,1.67E-10,pos,yes,9.778375864,-0.003486484,0.000430739,-8.094197428,1.33E-14,neg,yes,0.762049583,Camk2g,Camk2g_Exon,14,20757705,20757754,20757705,20757706,50,-,CGGGGGCGGAGCTCTGCCTGCCAACTGAGGGGATACAGTCTCTCAGTGCA,"Exon (Camk2g-209/Camk2g, exon 4 of 11)",14,20734875,20794051,59177,2,Camk2g-203,36297,Camk2g-203;Camk2g-201;Camk2g-202;Camk2g-217;Camk2g-209;Camk2g-204;Camk2g-212;Camk2g-211;Camk2g-214;Camk2g-216;Camk2g-206,Camk2g;Camk2g;Camk2g;Camk2g;Camk2g;Camk2g;Camk2g;Camk2g;Camk2g;Camk2g;Camk2g,0;0;0;0;0;0;0;0;0;0;7755,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,15,12325,ENSMUSG00000021820,conserved gene and region,14,20757639,20757712,74,*,74,11,0.783783784,0.986666667,0.148648649,1.07E-10,CpGisland,TRUE,NA,NRS
25332,cg25194481,0.0000386,0.00000388,9.953778086,1.95E-20,gain,yes,-0.0000311,0.00000659,-4.726012393,0.00000348,neg,ns,-0.00400661,0.001930331,-2.075607692,0.03875445,neg,ns,1.411678421,0.000105105,0.0000664,1.58329496,0.114373872,pos,ns,0.909377233,Srrm1,Srrm1_Exon,4,135342541,135342590,135342541,135342542,50,+,CGTCTTCTAGGGGAAGGAGATCTGGATTTGCGTCTAGGATGAAAGTAATT,"Exon (Srrm1-203/Srrm1, exon 6 of 17)",4,135320484,135353321,32838,2,Srrm1-203,10731,Srrm1-203;Srrm1-202;Srrm1-208;Srrm1-201;Srrm1-212;Srrm1-213;Srrm1-204;Srrm1-214;Srrm1-205;Srrm1-207;Srrm1-209;Srrm1-206,Srrm1;Srrm1;Srrm1;Srrm1;Srrm1;Srrm1;Srrm1;Srrm1;Srrm1;Srrm1;Srrm1;Srrm1,0;0;0;0;0;-4468;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,8,51796,ENSMUSG00000028809,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26464,cg12027384,0.0000104,0.00000276,3.756522119,0.000205781,gain,ns,-0.0000221,0.00000468,-4.72437875,0.0000035,neg,ns,-0.006937076,0.001372521,-5.054258185,0.00000074,neg,ns,6.130792404,0.0000924,0.0000472,1.958188332,0.051104516,pos,ns,0.887220099,Mtor,Mtor_Exon,4,148538823,148538872,148538823,148538824,50,+,CGTGAAAGGCATGTTTGAGGTGCTGGAGCCCTTGCATGCTATGATGGAAC,"Exon (Mtor-202/Mtor, exon 44 of 58)",4,148448611,148557683,109073,1,Mtor-202,90212,Mtor-202,Mtor,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,5,56717,ENSMUSG00000028991,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9732,cg06937549,0.0000847,0.0000166,5.111440436,0.00000056,gain,yes,-0.000132987,0.0000282,-4.723300085,0.00000352,neg,ns,0.022321722,0.008248638,2.7061101,0.007184578,pos,ns,2.143598726,-0.000333008,0.00028367,-1.173928529,0.241324733,neg,ns,0.400920323,Hnrnph1,Hnrnph1_Exon,11,50381516,50381565,50381516,50381517,50,+,CGGGGGAGGCCTTCGTGCAGTTTGCTTCACAGGAAATAGCTGAAAAGGCT,"Exon (Hnrnph1-203/Hnrnph1, exon 6 of 15)",11,50376990,50386528,9539,1,Hnrnph1-203,4526,Hnrnph1-203;Hnrnph1-201;Hnrnph1-205;Hnrnph1-206;Hnrnph1-215;Hnrnph1-204;Hnrnph1-202;Hnrnph1-207;Hnrnph1-208;Hnrnph1-210;Hnrnph1-211;Hnrnph1-213;Hnrnph1-209;Hnrnph1-218;Hnrnph1-216;Hnrnph1-214;Hnrnph1-212;Hnrnph1-217,Hnrnph1;Hnrnph1;Hnrnph1;Hnrnph1;Hnrnph1;Hnrnph1;Hnrnph1;Hnrnph1;Hnrnph1;Hnrnph1;Hnrnph1;Hnrnph1;Hnrnph1;Hnrnph1;Hnrnph1;Hnrnph1;Hnrnph1;Hnrnph1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;-2247;-2266;-3398,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,59013,ENSMUSG00000007850,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
18288,cg10397346,0.000163455,0.0000174,9.397803358,1.27E-18,gain,yes,-0.000139434,0.0000295,-4.718881651,0.00000359,neg,ns,0.054762921,0.008656604,6.326143653,8.78E-10,pos,ns,9.056719338,-0.001636372,0.0002977,-5.496715124,8.09E-08,neg,yes,0.748641807,Dyrk1a,Dyrk1a_Exon,16,94692018,94692067,94692018,94692019,50,-,CGTCTACTCCAATCCCCGCCAAGAGACTGGCATAGCTGGACATCCAACAT,"Exon (Dyrk1a-202/Dyrk1a, exon 12 of 12)",16,94570010,94695067,125058,1,Dyrk1a-202,122008,Dyrk1a-202;Dyrk1a-203;Dyrk1a-201,Dyrk1a;Dyrk1a;Dyrk1a,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,14,13548,ENSMUSG00000022897,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8882,cg13653679,0.000142369,0.0000214,6.661062956,1.24E-10,gain,yes,-0.000171182,0.0000363,-4.714405639,0.00000367,neg,ns,0.01377784,0.010637728,1.295186248,0.196219697,pos,ns,0.7072574,-0.001283216,0.000365831,-3.507677548,0.00051889,neg,ns,0.561912321,Gm15217,Gm15217_Intergenic_upstream,14,46240591,46240640,46240591,46240592,50,+,CGGTGCTGAGCAGTGATTTTCCATATCTGACTGCCTTTGTGTTCACCCCA,Distal Intergenic,14,46379414,46383418,4005,1,Gm15217-202,-138774,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,100041724,ENSMUSG00000079261,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24916,cg07260343,0.0000251,0.00000551,4.544211783,0.00000791,gain,ns,-0.0000441,0.00000937,-4.713543345,0.00000368,neg,ns,0.0076964,0.0027438,2.805015362,0.005349223,pos,ns,2.271709322,-0.000325602,0.0000944,-3.450666021,0.000636753,neg,ns,0.834452262,Wdr11,Wdr11_Exon,7,129606591,129606640,129606591,129606592,50,+,CGTCCCTTCAGTATGGTGTGCTGTCCTGTCAATGAGAATGCAGCCGCCCT,"Exon (Wdr11-201/Wdr11, exon 8 of 29)",7,129591863,129635738,43876,1,Wdr11-201,14728,Wdr11-201;Wdr11-205;Wdr11-203;Wdr11-207;Wdr11-206;Wdr11-208;Wdr11-209,Wdr11;Wdr11;Wdr11;Wdr11;Wdr11;Wdr11;Wdr11,0;0;0;0;0;0;-1167,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,207425,ENSMUSG00000042055,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23069,cg08113048,-0.0000494,0.00000885,-5.585205292,5.11E-08,loss,yes,-0.0000708,0.000015,-4.712355665,0.0000037,neg,ns,0.012456306,0.004402639,2.829281477,0.004969461,pos,ns,2.303690711,-0.00112058,0.000151406,-7.401137482,1.28E-12,neg,yes,0.774209551,Rnf220,Rnf220_Exon,4,117272654,117272703,117272654,117272655,50,-,CGGCCTTTGATCAGGACACAGAGCCCACGTCCGAGCCTTTTATTACTGTC,"Exon (Rnf220-211/Rnf220, exon 2 of 2)",4,117271463,117497052,225590,2,Rnf220-201,224349,Rnf220-201;Rnf220-203;Rnf220-212;Rnf220-202;Rnf220-205;Rnf220-214;Rnf220-211;Rnf220-209;Tmem53-201;Tmem53-204;Tmem53-203;Tmem53-206;Tmem53-202;Tmem53-205,Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Tmem53;Tmem53;Tmem53;Tmem53;Tmem53;Tmem53,0;0;0;0;0;0;0;0;20703;20614;20612;20592;20314;7283,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,15,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11404,cg26828243,0.0000239,0.0000111,2.165979072,0.031074811,gain,ns,0.0000884,0.0000188,4.709537446,0.00000375,pos,ns,0.018696529,0.005500404,3.39911938,0.000764427,pos,ns,3.11666412,-0.000350289,0.000189158,-1.851829107,0.065001046,neg,ns,0.342056974,Zic3,Zic3_fiveUTR,X,58030606,58030655,58030606,58030607,50,+,CGAGGAGTGAGTGATTGACTTTATCAGTCCAAGGACATTACTCTGGAGGC,Promoter (<=1kb),20,58030643,58036559,5917,1,Zic3-201,0,Zic3-204;Zic3-201;Zic3-203;Zic3-202,Zic3;Zic3;Zic3;Zic3,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,17,22773,ENSMUSG00000067860,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
17495,cg02610586,0.00000376,0.00000509,0.738178605,0.460964367,gain,ns,0.0000407,0.00000865,4.7069439,0.0000038,pos,ns,0.007387314,0.002533848,2.915452512,0.003810589,pos,ns,2.419007862,-0.000118138,0.0000871,-1.355742672,0.17616787,neg,ns,0.908667484,Chtop,Chtop_Exon,3,90503239,90503288,90503239,90503240,50,-,CGTGCCTGGATGTTACTCTTACCCAGGCGCTGCTTTAAGCTCTTCTGGAA,"Exon (Chtop-205/Chtop, exon 3 of 4)",3,90498956,90509450,10495,2,Chtop-205,6162,Chtop-205;Chtop-201;Chtop-206;Chtop-203;Chtop-202;Chtop-207;Chtop-204;Chtop-209;Chtop-208,Chtop;Chtop;Chtop;Chtop;Chtop;Chtop;Chtop;Chtop;Chtop,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,10,66511,ENSMUSG00000001017,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8957,cg24661451,-0.00000271,0.00000222,-1.219836054,0.223454241,loss,ns,0.0000178,0.00000377,4.705299476,0.00000382,pos,ns,0.002819476,0.001105649,2.550063752,0.011251185,pos,ns,1.948801736,-0.0000164,0.000038,-0.430341788,0.667246055,neg,ns,0.953269395,Kcnc1,Kcnc1_Exon,7,46428159,46428208,46428159,46428160,50,-,CGGCCACCGCAGCTGGGATCTCCCAATTATTGTAAATCTGTCGTAAACTC,"Exon (Kcnc1-201/Kcnc1, exon 2 of 2)",7,46396497,46433354,36858,1,Kcnc1-201,31662,Kcnc1-201;Kcnc1-203;Kcnc1-202,Kcnc1;Kcnc1;Kcnc1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,14,16502,ENSMUSG00000058975,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
293,cg23697154,0.0000799,0.00000532,15.01887708,1.09E-38,gain,yes,-0.0000425,0.00000904,-4.701625545,0.00000389,neg,ns,-0.008487157,0.002648196,-3.204882481,0.001491943,neg,ns,2.826247635,0.000307158,0.0000911,3.372723156,0.000838698,pos,ns,0.87969616,Syne1,Syne1_Exon,10,5030382,5030431,5030430,5030431,50,-,TGTGGACTGCTGACAGAGGGTCCAGGCTGTGAGAGACTACACTTGCCTCG,"Exon (Syne1-205/Syne1, exon 145 of 146)",10,5020917,5550678,529762,2,Syne1-205,520247,Syne1-205;Syne1-202,Syne1;Syne1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,64009,ENSMUSG00000096054,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22389,cg11338714,-0.000000183,0.00000194,-0.09396063,0.925201131,loss,ns,-0.0000155,0.0000033,-4.70064057,0.00000391,neg,ns,0.004235964,0.000967885,4.376516806,0.0000165,pos,ns,4.782479115,-0.00016909,0.0000333,-5.079999679,0.000000653,neg,yes,0.955643973,Ubp1,Ubp1_Exon,9,113959436,113959485,113959436,113959437,50,+,CGGACTTTGCCAGCAGACTACGGTGATTCTCTGGCAAAGCGAGGCAGTGT,"Exon (Ubp1-202/Ubp1, exon 9 of 17)",9,113930934,113977199,46266,1,Ubp1-201,28502,Fbxl2-202;Ubp1-201;Ubp1-202;Ubp1-204;Ubp1-203;Ubp1-207;Ubp1-206,Fbxl2;Ubp1;Ubp1;Ubp1;Ubp1;Ubp1;Ubp1,67244;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,22221,ENSMUSG00000009741,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10040,cg05606175,0.0000893,0.0000202,4.422249083,0.0000135,gain,ns,-0.00016122,0.0000343,-4.69820165,0.00000395,neg,ns,0.064906008,0.010053208,6.456248688,4.14E-10,pos,ns,9.383225432,-0.001726018,0.000345729,-4.992400555,0.000000997,neg,yes,0.407327564,Hnrnpc,Hnrnpc_fiveUTR,14,52098533,52098582,52098533,52098534,50,+,CGCCTTGCTGCCCTGTGAAAGGAGAAGGGACAGATTGAGTCAGAGTTCCT,5' UTR,14,52073377,52104028,30652,2,Hnrnpc-201,5446,Hnrnpc-201;Hnrnpc-202;Hnrnpc-205;Hnrnpc-209;Hnrnpc-211;Hnrnpc-206;Hnrnpc-207;Hnrnpc-210;Hnrnpc-204;Hnrnpc-208;Hnrnpc-203;Hnrnpc-213;Hnrnpc-212,Hnrnpc;Hnrnpc;Hnrnpc;Hnrnpc;Hnrnpc;Hnrnpc;Hnrnpc;Hnrnpc;Hnrnpc;Hnrnpc;Hnrnpc;Hnrnpc;Hnrnpc,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,3,15381,ENSMUSG00000060373,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21966,cg15340018,0.00000867,0.00000373,2.324451868,0.020747119,gain,ns,-0.0000297,0.00000633,-4.689313398,0.00000411,neg,ns,-0.0000805,0.001855562,-0.04339192,0.965417054,neg,ns,0.015285034,0.00000467,0.0000638,0.073239748,0.94166257,pos,ns,0.89333402,Ap1g1,Ap1g1_Exon,8,109843354,109843403,109843354,109843355,50,-,CGTGCAATGGAATTGAGTTTTGCCCTGGTAAATGGGAATAATATCCGAGG,"Exon (Ap1g1-202/Ap1g1, exon 13 of 24)",8,109778554,109864204,85651,1,Ap1g1-202,64800,Ap1g1-202;Ap1g1-201;Ap1g1-203,Ap1g1;Ap1g1;Ap1g1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,11,16,11765,ENSMUSG00000031731,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15937,cg25776150,-0.000000297,0.0000132,-0.02248624,0.982074555,loss,ns,0.000105078,0.0000224,4.688035727,0.00000414,pos,ns,0.022681541,0.006566579,3.454087944,0.000629025,pos,ns,3.20133188,-0.000461448,0.000225824,-2.043395046,0.041858505,neg,ns,0.471965475,Dmd,Dmd_Exon,X,83928749,83928798,83928749,83928750,50,-,CGGTTGATGTGGTTAGCTAACTGCCCTGGGCCCTGTATTGGTTTTGCTCA,"Exon (Dmd-209/Dmd, exon 2 of 2)",20,82948903,85206141,2257239,1,Dmd-203,979846,Dmd-203;Dmd-215;Dmd-209,Dmd;Dmd;Dmd,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,20,28,13405,ENSMUSG00000045103,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5982,cg01382164,-0.0000174,0.0000126,-1.377566805,0.169330782,loss,ns,-0.000100572,0.0000215,-4.685441722,0.00000419,neg,ns,-0.004588482,0.006288442,-0.729669125,0.466143435,neg,ns,0.331480428,-0.00055605,0.000216259,-2.571224253,0.01060008,neg,ns,0.713093067,Ddr1,Ddr1_Exon,17,35686476,35686525,35686524,35686525,50,+,CTTACCCTGGGTGTTGGTGGGTTTGGCCCAGGCGGGTGTGGGGGGGCCCG,"Exon (Ddr1-204/Ddr1, exon 12 of 18)",17,35681567,35700610,19044,2,Ddr1-204,14085,Ddr1-204;Ddr1-203;Ddr1-212;Ddr1-202;Ddr1-201;Ddr1-211;Ddr1-210;Ddr1-209;Ddr1-205;Ddr1-208;Ddr1-207,Ddr1;Ddr1;Ddr1;Ddr1;Ddr1;Ddr1;Ddr1;Ddr1;Ddr1;Ddr1;Ddr1,0;0;0;0;0;0;0;17452;18096;11446;15521,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,12305,ENSMUSG00000003534,conserved gene and region,17,35686508,35686619,112,*,112,10,0.714285714,0.903954802,0.089285714,0.000000188,CpGisland,TRUE,U11,Tr-P
3222,cg08201223,0.000315368,0.0000131,24.06225049,6.76E-73,gain,yes,-0.000104291,0.0000223,-4.683869649,0.00000422,neg,ns,0.019765786,0.006523166,3.030090647,0.002650673,pos,ns,2.576643821,-0.000121197,0.000224331,-0.540259661,0.589405889,neg,ns,0.274652912,Cadps2,Cadps2_Intron,6,23272823,23272872,23272823,23272824,50,-,CGGAAAACAGAACATCAGTCTAATCTAGTGTTTAAGGTGAGGTTTTCAAA,"Intron (Cadps2-213/Cadps2, intron 28 of 29)",6,23262773,23839137,576365,2,Cadps2-213,566265,Cadps2-213;Cadps2-205;Cadps2-212;Cadps2-201;Cadps2-209;Cadps2-206;Cadps2-211;Cadps2-207;Cadps2-202;Cadps2-210,Cadps2;Cadps2;Cadps2;Cadps2;Cadps2;Cadps2;Cadps2;Cadps2;Cadps2;Cadps2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,15,320405,ENSMUSG00000017978,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11159,cg26769410,-0.0000233,0.0000143,-1.629978979,0.104121555,loss,ns,0.000113487,0.0000242,4.682492617,0.00000424,pos,ns,0.01648186,0.007100479,2.321232,0.020922557,pos,ns,1.679385245,-0.000241353,0.000244185,-0.988404274,0.323725525,neg,ns,0.429556849,Fhl1,Fhl1_Exon,X,56791389,56791438,56791437,56791438,50,-,TGGTGGTTCTTTATAGAAAAAATCGAAGCTTAGCAGCTCCTCGAGGCCCG,"Exon (Fhl1-203/Fhl1, exon 7 of 8)",20,56731787,56793346,61560,1,Fhl1-201,59602,Fhl1-201;Fhl1-203;Fhl1-206;Fhl1-205;Fhl1-204;Fhl1-202;Fhl1-210;Fhl1-207;Fhl1-208;Fhl1-209,Fhl1;Fhl1;Fhl1;Fhl1;Fhl1;Fhl1;Fhl1;Fhl1;Fhl1;Fhl1,0;0;0;0;0;0;11570;0;3664;3391,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,11,14199,ENSMUSG00000023092,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4458,cg10329153,-0.0000231,0.0000108,-2.131473635,0.033836419,loss,ns,0.000086,0.0000184,4.677939353,0.00000433,pos,ns,0.011911893,0.005387895,2.210862254,0.027775123,pos,ns,1.556344012,0.000393978,0.000185289,2.12628874,0.034269096,pos,ns,0.250552239,Sox4,Sox4_threeUTR,13,28949492,28949541,28949492,28949493,50,+,CGGCATTTAGATAGATCCAGTGGTTTAAACGGCACGTTTTTGCTTATAAA,3' UTR,13,28948919,28953713,4795,2,Sox4-201,4172,Sox4-201,Sox4,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,8,12,20677,ENSMUSG00000076431,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
733,cg26237121,0.000101066,0.0000132,7.657389832,2.44E-13,gain,yes,-0.000104839,0.0000224,-4.675605057,0.00000438,neg,ns,0.056157039,0.006569035,8.548750736,5.77E-16,pos,yes,15.23907256,-0.000756802,0.000225909,-3.350034988,0.000907856,neg,ns,0.824133625,Nipbl,Nipbl_Exon,15,8351675,8351724,8351723,8351724,50,-,ATCAATGCTAACCATTAATGCTGGCCTTGACCCATTTCCCGTAGAACCCG,"Exon (Nipbl-201/Nipbl, exon 10 of 47)",15,8290617,8444463,153847,2,Nipbl-201,92739,Nipbl-201,Nipbl,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,19,36,71175,ENSMUSG00000022141,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19456,cg25861579,0.00000865,0.0000172,0.503640554,0.614871689,gain,ns,0.000136425,0.0000292,4.673398037,0.00000442,pos,ns,-0.000464401,0.008552245,-0.054301689,0.956729782,neg,ns,0.019210707,0.000437282,0.000294111,1.48679157,0.13808622,pos,ns,0.667876092,Gm12689,Gm12689_Intergenic_downstream,4,99355403,99355452,99355451,99355452,50,+,CCTTGTCCCCTGTTATTGCGGTCACTTGACCTCAGATGTAACTTCTGTCG,Distal Intergenic,4,99295900,99297258,1359,1,Gm12689-201,59503,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,12,26,100137011,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22042,cg25217583,-0.0000436,0.0000148,-2.954627778,0.003370273,loss,ns,0.000117127,0.0000251,4.673205342,0.00000443,pos,ns,0.003979938,0.007342764,0.542021746,0.588192909,pos,ns,0.230480216,-0.000052,0.000252517,-0.205784207,0.83709455,neg,ns,0.393372011,Elavl4,Elavl4_Intron,4,110287687,110287736,110287735,110287736,50,-,ACAGAGACCAGATTTCTGAACTGCTTCTTGTGTCTGGTAATTAAGGCCCG,"Intron (Elavl4-205/Elavl4, intron 1 of 6)",4,110203737,110290272,86536,2,Elavl4-205,2536,Elavl4-204;Elavl4-201;Elavl4-203;Elavl4-202;Elavl4-205;Elavl4-206;Elavl4-207;Elavl4-208;Elavl4-212;Elavl4-209,Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,36,15572,ENSMUSG00000028546,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14962,cg12811653,0.00000631,0.00000595,1.059943723,0.289995339,gain,ns,-0.0000472,0.0000101,-4.67081118,0.00000448,neg,ns,-0.00516554,0.002963487,-1.743061167,0.082314428,neg,ns,1.084524034,-0.000111862,0.000101914,-1.097615666,0.273224174,neg,ns,0.832928286,Supt6,Supt6_Exon,11,78208961,78209010,78209009,78209010,50,-,GCACTGAACATCTGTGAAGTCATGTTCTGAGGCAGGGCATTCACAGCCCG,"Exon (Supt6-201/Supt6, exon 35 of 37)",11,78206746,78245987,39242,2,Supt6-201,36977,Proca1-202;Proca1-205;Proca1-201;Proca1-203;Proca1-204;Supt6-201;Supt6-202,Proca1;Proca1;Proca1;Proca1;Proca1;Supt6;Supt6,15569;14896;14257;14227;14215;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,7,20926,ENSMUSG00000002052,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7274,cg10527498,0.0000026,0.00000282,0.922736636,0.356862077,gain,ns,-0.0000224,0.00000479,-4.668746177,0.00000452,neg,ns,-0.001102773,0.00140338,-0.785797492,0.432586331,neg,ns,0.363927207,-0.0000222,0.0000483,-0.459213037,0.646403023,neg,ns,0.919421672,Zdhhc16,Zdhhc16_threeUTR,19,41938788,41938837,41938836,41938837,50,+,CCTGTGTCCCTTCCTCACAGGTGTGTGCTGAAGATGGATCACCACTGCCG,3' UTR,19,41933490,41944104,10615,1,Zdhhc16-201,5298,Mms19-209;Mms19-217;Zdhhc16-206;Zdhhc16-201;Zdhhc16-209;Zdhhc16-208;Zdhhc16-211;Zdhhc16-207;Zdhhc16-204;Zdhhc16-210;Zdhhc16-203;Zdhhc16-202;Zdhhc16-205,Mms19;Mms19;Zdhhc16;Zdhhc16;Zdhhc16;Zdhhc16;Zdhhc16;Zdhhc16;Zdhhc16;Zdhhc16;Zdhhc16;Zdhhc16;Zdhhc16,42277;42320;5308;0;5266;0;0;0;0;0;-1167;-2533;-2782,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,2,74168,ENSMUSG00000025157,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12576,cg21147196,0.000139506,0.0000179,7.787483299,1.03E-13,gain,yes,-0.000142034,0.0000304,-4.667008609,0.00000455,neg,ns,0.039965501,0.008916018,4.482438325,0.0000104,pos,ns,4.983022177,-0.001714134,0.000306621,-5.590399225,4.97E-08,neg,yes,0.656698484,Clpx,Clpx_Exon,9,65318742,65318791,65318742,65318743,50,-,CGTTCAGCAAGTAAGCAGTTGAGTATTTTGTTCAAGCCCACTAAAAGGAA,"Exon (Clpx-201/Clpx, exon 9 of 14)",9,65294260,65330657,36398,1,Clpx-201,24482,Clpx-201;Clpx-202;Clpx-203,Clpx;Clpx;Clpx,0;0;8590,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,Exon,1,1,270166,ENSMUSG00000015357,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18265,cg23114440,0.0000194,0.0000123,1.573561364,0.116608893,gain,ns,0.0000975,0.0000209,4.665607311,0.00000458,pos,ns,0.02065964,0.006124986,3.373010135,0.000837856,pos,ns,3.076830717,-0.000365791,0.000210638,-1.736585702,0.083453731,neg,ns,0.548346792,Ap3b1,Ap3b1_Intergenic_downstream,13,94645521,94645570,94645569,94645570,50,-,TGTTTCGCTTCAGCTCTGCCCCTGCAACAGAGGATCTAATCAATCTGCCG,Distal Intergenic,13,94542303,94547867,5565,1,Ap3b1-202,103267,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,33,55,11774,ENSMUSG00000021686,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1102,cg12887144,0.000139062,0.0000134,10.34356873,9.75E-22,gain,yes,-0.000106534,0.0000228,-4.66431716,0.00000461,neg,ns,-0.004788622,0.006691386,-0.71563977,0.474752482,neg,ns,0.323532756,0.00000248,0.000230116,0.010788187,0.991399378,pos,ns,0.700831357,Rad54b,Rad54b_Intron,4,11579567,11579616,11579615,11579616,50,-,CTGCGTCAGCTTAAGCTGGAGGAATTTTAATAAACCCTCCCCTGTAGGCG,"Intron (Rad54b-206/Rad54b, intron 3 of 4)",4,11558922,11593653,34732,1,Rad54b-206,20645,Fsbp-201;Rad54b-206;Rad54b-202;Rad54b-203;Rad54b-201;Rad54b-207,Fsbp;Rad54b;Rad54b;Rad54b;Rad54b;Rad54b,0;0;0;20618;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,623474,ENSMUSG00000078773,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18883,cg22179638,0.0000134,0.0000126,1.065690417,0.287392911,gain,ns,0.0000996,0.0000214,4.659883987,0.0000047,pos,ns,0.018160397,0.006261117,2.900504437,0.003992011,pos,ns,2.398808322,-0.0000503,0.000215319,-0.233649192,0.815411551,neg,ns,0.682678276,Rps18-ps6,Rps18-ps6_Intron,13,97824452,97824501,97824500,97824501,50,+,AAATTAACTGCCTCTTGCCATTATCTGCTCCCTGAGGACCAATCAGAGCG,"Intron (Gm41031-201/Gm41031-201, intron 1 of 2)",13,97760072,97760632,561,2,Rps18-ps6-201,-63820,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20577,cg20432508,0.0000194,0.0000044,4.414418035,0.000014,gain,ns,-0.0000348,0.00000747,-4.655778896,0.00000479,neg,ns,0.005264305,0.002187601,2.406428774,0.016694172,pos,ns,1.77743512,-0.000138985,0.0000752,-1.847429887,0.065637495,neg,ns,0.89451207,Srek1,Srek1_Exon,13,103760485,103760534,103760533,103760534,50,+,AATTCCACAAAAGCAAACCGAGTTGGCTGAGTCTCATCACCTGCCATCCG,"Exon (Srek1-204/Srek1, exon 3 of 10)",13,103739348,103764582,25235,2,Srek1-204,4048,Srek1-204;Srek1-201;Srek1-210;Srek1-205;Srek1-209;Srek1-206;Srek1-202,Srek1;Srek1;Srek1;Srek1;Srek1;Srek1;Srek1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,10,218543,ENSMUSG00000032621,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11484,cg08293311,-0.0000068,0.00000534,-1.27507866,0.203236186,loss,ns,-0.0000422,0.00000907,-4.654484052,0.00000482,neg,ns,0.007704169,0.002655968,2.900700777,0.003989577,pos,ns,2.399073108,-0.000303725,0.0000913,-3.325263576,0.000989408,neg,ns,0.892716107,Acvr1,Acvr1_Exon,2,58479684,58479733,58479684,58479685,50,+,CGTGATGTTCCTGTTACACCAGTCCCCTTGGCAGCACTCCACGGCTTGGC,"Exon (Acvr1-206/Acvr1, exon 3 of 11)",2,58388644,58516272,127629,2,Acvr1-206,36539,Acvr1-206;Acvr1-203;Acvr1-202;Acvr1-204;Acvr1-201;Acvr1-205,Acvr1;Acvr1;Acvr1;Acvr1;Acvr1;Acvr1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,11477,ENSMUSG00000026836,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3227,cg05861987,0.000577975,0.0000208,27.76405132,4.54E-86,gain,yes,-0.000164535,0.0000354,-4.652359033,0.00000487,neg,ns,0.043973127,0.010361023,4.244091042,0.000029,pos,ns,4.537165326,-0.0000222,0.000356315,-0.062366751,0.950310964,neg,ns,0.492304102,Cadps2,Cadps2_Intron,6,23273362,23273411,23273410,23273411,50,+,TCAGTCCCAGACTCGGCAATTTTCTAACAAGGATTAAAGTTGTTTCTCCG,"Intron (Cadps2-213/Cadps2, intron 28 of 29)",6,23262773,23839137,576365,2,Cadps2-213,565726,Cadps2-213;Cadps2-205;Cadps2-212;Cadps2-201;Cadps2-209;Cadps2-206;Cadps2-211;Cadps2-207;Cadps2-202;Cadps2-210,Cadps2;Cadps2;Cadps2;Cadps2;Cadps2;Cadps2;Cadps2;Cadps2;Cadps2;Cadps2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,15,320405,ENSMUSG00000017978,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
782,cg13487069,0.0000775,0.0000081,9.571733112,3.49E-19,gain,yes,-0.000064,0.0000138,-4.648884271,0.00000494,neg,ns,0.0000392,0.004031253,0.00972966,0.992243235,pos,ns,0.003381853,0.000188092,0.000138634,1.356747029,0.17584875,pos,ns,0.800644166,Usp7,Usp7_Exon,16,8715910,8715959,8715910,8715911,50,+,CGTTACTCCCCTGGGAAGGACACAACCCTCATGAGGATTGATGGACATGC,"Exon (Usp7-210/Usp7, exon 3 of 32)",16,8689595,8792308,102714,2,Usp7-207,76349,Usp7-207;Usp7-206;Usp7-208;Usp7-210,Usp7;Usp7;Usp7;Usp7,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,10,252870,ENSMUSG00000022710,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8840,cg17945038,0.0000313,0.0000111,2.82293001,0.005066419,gain,ns,-0.0000876,0.0000189,-4.645976567,0.00000501,neg,ns,0.020519887,0.005522533,3.71566578,0.000240365,pos,ns,3.619128066,-0.000361067,0.000189919,-1.901157239,0.058208587,neg,ns,0.7237991,Vegfa,Vegfa_Exon,17,46021004,46021053,46021004,46021005,50,-,CGTTTAACTCAAGCTGCCTCGCCTTGCAACGCGAGTCTGTGTTTTTGCAG,"Exon (Vegfa-202/Vegfa, exon 6 of 7)",17,46016993,46031815,14823,2,Vegfa-201,10762,Vegfa-201;Vegfa-202;Vegfa-210;Vegfa-207;Vegfa-205;Vegfa-208;Vegfa-204;Vegfa-206;Vegfa-203;Vegfa-209,Vegfa;Vegfa;Vegfa;Vegfa;Vegfa;Vegfa;Vegfa;Vegfa;Vegfa;Vegfa,0;0;0;0;0;0;0;0;0;10303,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,7,22339,ENSMUSG00000023951,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9138,cg16582560,-0.000125134,0.000108086,-1.157728943,0.247865873,loss,ns,0.000853074,0.000183624,4.645771005,0.00000501,pos,ns,-0.077921496,0.053795517,-1.448475655,0.148494756,neg,ns,0.828288882,0.005906883,0.001850023,3.19286917,0.001553331,pos,ns,0.251483536,Samd4,Samd4_Exon,14,47083462,47083511,47083462,47083463,50,-,CGTCACCCATTTAAAAGTCCTGTTTGTTTTTGCAGGCATTTACAGAGACA,"Exon (Samd4-201/Samd4, exon 9 of 13)",14,46882854,47103150,220297,1,Samd4-201,200608,Samd4-201;Samd4-211;Samd4-202;Samd4-206;Samd4-203;Samd4-204;Samd4-210;Samd4-205,Samd4;Samd4;Samd4;Samd4;Samd4;Samd4;Samd4;Samd4,0;0;0;0;0;0;0;-3624,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,16,74480,ENSMUSG00000021838,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22190,cg06936709,0.000043,0.0000183,2.346257348,0.019592583,gain,ns,0.000144525,0.0000311,4.640603725,0.00000513,pos,ns,0.034532974,0.009123999,3.784850858,0.00018462,pos,ns,3.73372224,-0.000412494,0.000313774,-1.314622798,0.189608454,neg,ns,0.554825653,Hdx,Hdx_Promoter,X,111697094,111697143,111697094,111697095,50,-,CGATCATCAATTCTCATCATGATCGTGACGTCACAAAAGACAGCGGCCAA,Promoter (<=1kb),20,111569931,111697079,127149,2,Hdx-202,-64,Hdx-202;Hdx-201,Hdx;Hdx,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,8,245596,ENSMUSG00000034551,conserved gene but different region,X,111697031,111697165,135,*,135,10,0.533333333,1.062155783,0.074074074,0.00000108,CpGisland,TRUE,NA,NRS
26435,cg12460733,0.000036,0.00000601,5.984143971,0.000000006,gain,yes,-0.0000474,0.0000102,-4.637354034,0.00000521,neg,ns,-0.014030071,0.002992411,-4.688551544,0.00000413,neg,ns,5.38416903,0.000290903,0.000102909,2.826809347,0.005006997,pos,ns,0.86257713,Clcn6,Clcn6_Exon,4,148010745,148010794,148010745,148010746,50,+,CGCTCCTCCATGGTCCAGTCTTCACTTGGGGACTGGTCAGGGTATAGGTT,"Exon (Clcn6-205/Clcn6, exon 20 of 23)",4,148004259,148038821,34563,2,Clcn6-205,28027,Clcn6-205;Clcn6-201;Clcn6-202,Clcn6;Clcn6;Clcn6,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,26372,ENSMUSG00000029016,conserved gene but different region,4,148010653,148010772,120,*,120,9,0.583333333,0.881632653,0.075,0.0000042,CpGisland,TRUE,U10,Tr-S
777,cg12841944,0.0000052,0.00000616,0.843577112,0.399556212,gain,ns,-0.0000485,0.0000105,-4.631106829,0.00000536,neg,ns,0.002465975,0.003068285,0.803698132,0.422187169,pos,ns,0.37449497,-0.000318919,0.000105518,-3.022409908,0.002716866,neg,ns,0.833519769,Usp7,Usp7_Exon,16,8712062,8712111,8712110,8712111,50,-,AAAGCGTGGCATCACCATAATCTTCCATGGCAGATTTCGCACAAAACACG,"Exon (Usp7-207/Usp7, exon 4 of 32)",16,8689595,8792308,102714,2,Usp7-207,80197,Usp7-207;Usp7-206;Usp7-208;Usp7-210,Usp7;Usp7;Usp7;Usp7,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,10,252870,ENSMUSG00000022710,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13067,cg01462040,0.0000531,0.000013,4.085913012,0.000056,gain,ns,0.000102311,0.0000221,4.6305534,0.00000537,pos,ns,0.026631078,0.006473011,4.114171602,0.0000498,pos,ns,4.302384906,-0.000388376,0.000222606,-1.744675118,0.082032449,neg,ns,0.306718387,Aff2,Aff2_fiveUTR,X,69360277,69360326,69360277,69360278,50,+,CGGCTTCTAGCTGTCCAGGCTCCGCCCCCTGTGAGTGTGTAAGTGTGTGA,Promoter (<=1kb),20,69360294,69868037,507744,1,Aff2-201,0,Aff2-201;Aff2-202;Aff2-203,Aff2;Aff2;Aff2,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,5,14266,ENSMUSG00000031189,conserved gene but different region,X,69360221,69360804,584,*,584,74,0.739726027,0.934278796,0.126712329,9.30E-65,CpGisland,TRUE,U3,Pr-B
27610,cg10915888,0.00000723,0.00000352,2.053543713,0.040858509,gain,ns,-0.0000277,0.00000598,-4.626767032,0.00000546,neg,ns,0.005259057,0.001752979,3.000069359,0.00291812,pos,ns,2.534896898,-0.0001844,0.0000603,-3.058809307,0.002416084,neg,ns,0.910390865,Copa,Copa_threeUTR,1,172110646,172110695,172110694,172110695,50,-,ACAGAACACTCATGCCCTTTGCCTCTTACAGCCATTGTGATCTGTAACCG,3' UTR,1,172082529,172122325,39797,1,Copa-206,28117,Copa-206;Copa-203;Copa-201;Copa-210;Copa-205;Copa-202,Copa;Copa;Copa;Copa;Copa;Copa,0;0;0;10910;-1496;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,2,12847,ENSMUSG00000026553,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4364,cg04521819,0.0000442,0.00000918,4.812554205,0.00000233,gain,ns,-0.0000721,0.0000156,-4.625494499,0.0000055,neg,ns,0.000779288,0.004567336,0.170622055,0.86463226,pos,ns,0.063168565,-0.000211667,0.00015707,-1.347593755,0.178773121,neg,ns,0.815709858,Snd1,Snd1_Intron,6,28538007,28538056,28538055,28538056,50,+,GCGTTTTAGCTGATCTGTGCTGTTTGTAGCCATATGGTCCCCTGAGCACG,"Intron (Snd1-203/Snd1, intron 8 of 16)",6,28480348,28877723,397376,1,Snd1-203,57659,Snd1-203;Snd1-201;Snd1-206,Snd1;Snd1;Snd1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,9,56463,ENSMUSG00000001424,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17105,cg21421484,-0.0000351,0.000021,-1.669779003,0.095972499,loss,ns,-0.00016476,0.0000357,-4.618340311,0.00000568,neg,ns,0.007690795,0.010451586,0.735849558,0.462378659,pos,ns,0.335002219,-0.000892225,0.000359429,-2.48233903,0.013581473,neg,ns,0.90754248,Gnptab,Gnptab_threeUTR,10,88429557,88429606,88429557,88429558,50,+,CGGAATATTTTCATTGTCACCAACGGGCAGATTCCATCCTGGCTGAACCT,Promoter (<=1kb),10,88429566,88433288,3723,1,Gnptab-204,0,Gnptab-206;Gnptab-201;Gnptab-204;Gnptab-205,Gnptab;Gnptab;Gnptab;Gnptab,0;0;0;-3755,TRUE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,432486,ENSMUSG00000035311,conserved gene but different region,10,88429478,88429672,195,*,195,14,0.553846154,0.9375,0.071794872,4.95E-09,CpGisland,TRUE,U10,Tr-S
19992,cg13470529,0.0000078,0.0000111,0.703917259,0.482012702,gain,ns,0.000087,0.0000188,4.616828244,0.00000572,pos,ns,0.024902919,0.005518232,4.51284376,0.00000909,pos,ns,5.041295398,-0.000588406,0.000189772,-3.100601297,0.002108672,neg,ns,0.461564021,Nhsl2,Nhsl2_fiveUTR,X,102005048,102005097,102005048,102005049,50,-,CGCGGTGGCTGCCAGTCCAGAGCAGAATGATGGGCAACTCTCACCACAAG,5' UTR,20,101849385,102076276,226892,1,Nhsl2-202,155663,Nhsl2-202;Nhsl2-201;Nhsl2-207;Nhsl2-206,Nhsl2;Nhsl2;Nhsl2;Nhsl2,0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,7,100042480,ENSMUSG00000079481,conserved gene and region,X,102005034,102005051,18,*,18,7,1,1.575,0.388888889,6.48E-11,CpGisland,TRUE,U13,Hc-P
24375,cg08519469,-0.0000381,0.00000588,-6.481464796,3.57E-10,loss,yes,-0.0000461,0.00001,-4.615301211,0.00000575,neg,ns,0.000974631,0.002928609,0.332796665,0.739512719,pos,ns,0.131054352,-0.000488194,0.000100715,-4.847304482,0.00000198,neg,ns,0.771389946,Ing4,Ing4_threeUTR,6,125047874,125047923,125047874,125047875,50,+,CGAACCCACCTATTGCCTTTGTCACCAGGTCTCCTATGGAGAGATGATTG,3' UTR,6,125039760,125049002,9243,1,Ing4-205,8114,Acrbp-205;Acrbp-204;Acrbp-202;Acrbp-201;Acrbp-203;Ing4-205;Ing4-203;Ing4-201;Ing4-208;Ing4-207;Ing4-202;Ing4-209;Ing4-204;Ing4-206,Acrbp;Acrbp;Acrbp;Acrbp;Acrbp;Ing4;Ing4;Ing4;Ing4;Ing4;Ing4;Ing4;Ing4;Ing4,-1766;-2024;-2036;-2044;-3931;0;8038;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,5,28019,ENSMUSG00000030330,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
269,cg16010785,0.000000627,0.0000133,0.047180304,0.962399905,gain,ns,0.000104112,0.0000226,4.612258244,0.00000583,pos,ns,0.022098572,0.006613113,3.341629432,0.0009348,pos,ns,3.029281425,-0.000344914,0.000227424,-1.516607653,0.130384813,neg,ns,0.575703926,Npas4,Npas4_threeUTR,19,4984354,4984403,4984402,4984403,50,-,ACCAAAAAGGCAAACTGGACTTTATTATAAAGTTGGCTACAAAGTCACCG,3' UTR,19,4984355,4989971,5617,2,Npas4-202,5568,Npas4-202;Npas4-201;Npas4-203,Npas4;Npas4;Npas4,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,14,16,225872,ENSMUSG00000045903,conserved gene and region,19,4984402,4984672,271,*,271,24,0.63099631,0.889740082,0.088560886,2.74E-17,CpGisland,TRUE,U13,Hc-P
24851,cg05791576,0.0000697,0.00000725,9.620760032,2.42E-19,gain,yes,-0.0000568,0.0000123,-4.609002111,0.00000592,neg,ns,-0.000493699,0.003608197,-0.136826942,0.891256405,neg,ns,0.049997336,-0.0000225,0.000124086,-0.181700783,0.855936301,neg,ns,0.500184802,Gdf11,Gdf11_Exon,10,128886228,128886277,128886276,128886277,50,-,AGTTGCTCTGTGGCTGGCGGAACCAGCTGTGTAGCACTTGCTTGAAGTCG,"Exon (Gdf11-201/Gdf11, exon 2 of 3)",10,128882295,128891718,9424,2,Gdf11-201,5441,Gdf11-201,Gdf11,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,7,14561,ENSMUSG00000025352,conserved gene and region,10,128886195,128886438,244,*,244,15,0.594262295,0.697940503,0.06147541,1.03E-08,CpGisland,TRUE,U11,Tr-P
11394,cg15129042,0.0000223,0.00000731,3.050258997,0.00248385,gain,ns,0.0000572,0.0000124,4.60707139,0.00000597,pos,ns,0.014142903,0.003639601,3.885838869,0.000124726,pos,ns,3.904043013,-0.000259354,0.000125166,-2.07208658,0.039083894,neg,ns,0.458266,Zic3,Zic3_Intergenic_upstream,X,57921633,57921682,57921633,57921634,50,+,CGATCCTGGAGGACAGAGCGTGAAAGGGTTATCATCATCAGTTTTGACTG,Distal Intergenic,20,58022700,58031448,8749,1,Zic3-204,-101018,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,17,22773,ENSMUSG00000067860,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26939,cg17906950,-0.0000208,0.00000537,-3.875466805,0.000129902,loss,ns,-0.000042,0.00000912,-4.605719811,0.00000601,neg,ns,0.007376955,0.002671416,2.761439846,0.006097855,pos,ns,2.214822885,-0.000492448,0.0000919,-5.360284828,0.000000163,neg,yes,0.740824194,Itch,Itch_Exon,2,155206326,155206375,155206326,155206327,50,+,CGTTTGTGGGTGATTTTTCCAGGAGAAGAAGGTTTAGATTATGGAGGTGT,"Exon (Itch-201/Itch, exon 17 of 25)",2,155133509,155226855,93347,1,Itch-201,72817,Itch-201;Itch-206;Itch-202;Itch-203,Itch;Itch;Itch;Itch,0;72795;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,16396,ENSMUSG00000027598,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14900,cg00896768,0.0000077,0.00000281,2.736790149,0.006562164,gain,ns,-0.000022,0.00000478,-4.604006317,0.00000605,neg,ns,-0.002044703,0.001400326,-1.460162377,0.14525813,neg,ns,0.837859551,-0.0000698,0.0000482,-1.449790888,0.148127763,neg,ns,0.899142404,Fam222b,Fam222b_fiveUTR,11,78143140,78143189,78143188,78143189,50,-,CCTGTCTACCAGGGCCAGGTGACCTGTCCTTTCAGCTTCTTTCTCACACG,5' UTR,11,78094660,78156700,62041,1,Fam222b-201,48480,Fam222b-201;Fam222b-202;Fam222b-203,Fam222b;Fam222b;Fam222b,0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,10,21,216971,ENSMUSG00000037750,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24493,cg13326443,0.0000165,0.0000215,0.769048053,0.442450311,gain,ns,0.000168105,0.0000365,4.603150186,0.00000608,pos,ns,0.012976922,0.010698977,1.212912421,0.226086756,pos,ns,0.645724877,0.000215932,0.000367937,0.586871662,0.557717043,pos,ns,0.392696345,Kcna1,Kcna1_Exon,6,126642173,126642222,126642173,126642174,50,-,CGATGGCACACAAGGAGCCCACGATCTTGCCTCCAATTGTCACAGGGTAC,"Exon (Kcna1-201/Kcna1, exon 2 of 2)",6,126640397,126644796,4400,2,Kcna1-201,2574,Kcna1-201;Kcna1-202;Kcna1-203,Kcna1;Kcna1;Kcna1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,12,16485,ENSMUSG00000047976,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
24443,cg08593249,0.0000491,0.00000554,8.863091751,6.22E-17,gain,yes,-0.0000433,0.0000094,-4.600911867,0.00000614,neg,ns,-0.003203182,0.002755188,-1.162599931,0.245886067,neg,ns,0.60926608,0.0000102,0.0000948,0.107404708,0.914537397,pos,ns,0.696829041,Map7d1,Map7d1_Exon,4,126238588,126238637,126238588,126238589,50,+,CGTGTTTGGGCAGGTTAACTGCCGACACGGAGCACCTGCTCCCACCTGGA,"Exon (Map7d1-203/Map7d1, exon 6 of 18)",4,126232167,126240111,7945,2,Map7d1-204,1474,Map7d1-204;Map7d1-203;Map7d1-201;Map7d1-202;Map7d1-205,Map7d1;Map7d1;Map7d1;Map7d1;Map7d1,0;0;0;0;-3812,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,245877,ENSMUSG00000028849,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21440,cg08957853,-0.00000169,0.00000923,-0.183117984,0.85482515,loss,ns,-0.0000721,0.0000157,-4.600649268,0.00000615,neg,ns,0.036302939,0.004592869,7.904196157,4.76E-14,pos,yes,13.32228312,-0.001351088,0.000157948,-8.553983313,5.56E-16,neg,yes,0.758776203,Rbm5,Rbm5_threeUTR,9,107759792,107759841,107759840,107759841,50,+,CAGCTGGTAGCATCTTGCAAGTGATAAAACTCCACGAAGGCGAAACCACG,3' UTR,9,107740371,107770996,30626,2,Rbm5-214,11155,Rbm5-214;Rbm5-219;Rbm5-224;Rbm5-210;Rbm5-201;Rbm5-211;Rbm5-221;Rbm5-220;Rbm5-223;Rbm5-208;Rbm5-203;Rbm5-204;Rbm5-218,Rbm5;Rbm5;Rbm5;Rbm5;Rbm5;Rbm5;Rbm5;Rbm5;Rbm5;Rbm5;Rbm5;Rbm5;Rbm5,0;0;0;0;0;0;0;0;0;0;0;11118;11104,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,11,83486,ENSMUSG00000032580,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23252,cg15713562,0.000145764,0.00000964,15.12394657,4.35E-39,gain,yes,-0.0000753,0.0000164,-4.597147438,0.00000624,neg,ns,-0.005655005,0.004796907,-1.178885713,0.239347721,neg,ns,0.620970703,0.000136525,0.000164965,0.827600835,0.408533225,pos,ns,0.719164426,Eri3,Eri3_Intron,4,117611419,117611468,117611467,117611468,50,+,TGTTGAAATGAGAAACCCCTATTTCCTAGCTTGACCCCCTCACTAATTCG,"Intron (Eri3-201/Eri3, intron 6 of 8)",4,117550365,117674297,123933,1,Eri3-201,61054,Eri3-201;Eri3-206;Eri3-202;Eri3-204,Eri3;Eri3;Eri3;Eri3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,82,97,140546,ENSMUSG00000033423,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21470,cg13080172,0.0000048,0.00000951,0.505086906,0.61385668,gain,ns,0.0000742,0.0000162,4.593299926,0.00000635,pos,ns,0.011351665,0.004732184,2.398821313,0.017038403,pos,ns,1.768571108,-0.000189478,0.000162739,-1.164303359,0.245196347,neg,ns,0.916777924,Bcl11b,Bcl11b_Exon,12,107916615,107916664,107916663,107916664,50,-,GGCCTTGTGCATGTGCGTCTTCATGTGGCGCTTGAGCTTGCTGGCCTGCG,"Exon (Bcl11b-201/Bcl11b, exon 4 of 4)",12,107910403,108003602,93200,2,Bcl11b-201,86938,Bcl11b-201;Bcl11b-202;Bcl11b-203,Bcl11b;Bcl11b;Bcl11b,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,11,39,58208,ENSMUSG00000048251,conserved gene and region,12,107915259,107916962,1704,*,1704,150,0.66314554,0.800892387,0.088028169,2.06E-104,CpGisland,TRUE,NA,NRS
4511,cg23405587,-0.0000463,0.0000451,-1.027230945,0.305112578,loss,ns,-0.000351943,0.0000766,-4.592532678,0.00000638,neg,ns,-0.064635418,0.022451071,-2.878945828,0.00426756,neg,ns,2.369820344,-0.000268062,0.00077209,-0.347189786,0.728684327,neg,ns,0.633647077,Echdc1,Echdc1_threeUTR,10,29347353,29347402,29347401,29347402,50,-,ACTCCCTTCTTTGGTATATCTATTATATCTCGCTTAATCTTCCTGCGACG,3' UTR,10,29313500,29347469,33970,1,Echdc1-201,33853,Echdc1-202;Echdc1-204;Echdc1-201;Rnf146-202;Rnf146-201;Rnf146-203;Rnf146-205;Rnf146-204;Rnf146-206,Echdc1;Echdc1;Echdc1;Rnf146;Rnf146;Rnf146;Rnf146;Rnf146;Rnf146,34187;34072;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,2,52665,ENSMUSG00000019883,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11025,cg20778764,-0.00000861,0.0000188,-0.457565955,0.647584829,loss,ns,0.000146754,0.000032,4.58913429,0.00000647,pos,ns,0.033603127,0.009368663,3.586758172,0.000388895,pos,ns,3.410168055,-0.000635862,0.000322188,-1.973576298,0.049317727,neg,ns,0.316053016,Mbip,Mbip_Intergenic_downstream,12,56302180,56302229,56302180,56302181,50,-,CGCTGCTCAGGCGCGCACAGTAATATGCAATAAAACAGCAAGAAGTGAAT,Distal Intergenic,12,56340511,56345821,5311,2,Mbip-202,43641,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,12,13,217588,ENSMUSG00000021028,conserved gene and region,12,56302089,56302194,106,*,106,9,0.566037736,1.07918552,0.08490566,0.0000015,CpGisland,TRUE,U2,Pr-W
6842,cg24991381,0.0000685,0.00000799,8.577423531,4.72E-16,gain,yes,-0.0000622,0.0000136,-4.588415624,0.00000649,neg,ns,0.017316809,0.003974456,4.357026057,0.0000179,pos,ns,4.745994845,-0.000896945,0.000136681,-6.562313785,2.22E-10,neg,yes,0.768605338,Nr6a1,Nr6a1_Exon,2,38739038,38739087,38739038,38739039,50,+,CGCAGAAGAAAGGCAGTTTCTTGATCCAGGCAATCTGCCTAAAGAGCAGC,"Exon (Nr6a1-202/Nr6a1, exon 9 of 12)",2,38723370,38927688,204319,2,Nr6a1-202,188601,Nr6a1-202;Nr6a1-210;Nr6a1-201;Nr6a1-204;Nr6a1-205;Nr6a1-207;Nr6a1-206;Nr6a1-208;Nr6a1-209;Nr6a1-211,Nr6a1;Nr6a1;Nr6a1;Nr6a1;Nr6a1;Nr6a1;Nr6a1;Nr6a1;Nr6a1;Nr6a1,0;0;0;0;0;45433;46024;0;45382;24678,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,12,14536,ENSMUSG00000063972,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11024,cg06981318,-0.00000368,0.0000186,-0.197429724,0.843620658,loss,ns,0.00014512,0.0000317,4.582392721,0.00000667,pos,ns,0.032708483,0.009277971,3.525391921,0.000486649,pos,ns,3.312784544,-0.000588776,0.000319069,-1.845294322,0.06594831,neg,ns,0.349635707,Mbip,Mbip_Intergenic_downstream,12,56302140,56302189,56302140,56302141,50,-,CGTGTGCCCTGACTTGATTGTAATTGCCCGAATCTGCTCCCGCTGCTCAG,Distal Intergenic,12,56340511,56345821,5311,2,Mbip-202,43681,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,12,13,217588,ENSMUSG00000021028,conserved gene and region,12,56302089,56302194,106,*,106,9,0.566037736,1.07918552,0.08490566,0.0000015,CpGisland,TRUE,U2,Pr-W
11811,cg01085723,-0.0000183,0.0000124,-1.46850759,0.142980354,loss,ns,0.0000968,0.0000211,4.580209518,0.00000674,pos,ns,0.019875252,0.006193784,3.208903043,0.001471905,pos,ns,2.832120136,-0.000538174,0.000213004,-2.526594263,0.012014873,neg,ns,0.476528936,Gm14660,Gm14660_Intergenic_downstream,X,60831615,60831664,60831663,60831664,50,+,AAATACAGTTCAGTGGGCCTGAATTGATACGCTCAGCCCCTAAAGCCCCG,Distal Intergenic,20,60818208,60818782,575,1,Gm14660-201,13407,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,671636,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13528,cg08357176,0.00000942,0.00000845,1.11450714,0.265924991,gain,ns,0.0000658,0.0000144,4.579683022,0.00000675,pos,ns,0.011786231,0.004207541,2.80121582,0.005411014,pos,ns,2.266721344,-0.000103907,0.000144697,-0.718103352,0.473234396,neg,ns,0.620946298,Adamts16,Adamts16_Intergenic_upstream,13,71165711,71165760,71165759,71165760,50,-,ATGACAGCAGGCACTTAATTTGCATGTTCGACAGACAACAAACGGCCCCG,Distal Intergenic,13,70727802,70841811,114010,2,Adamts16-201,-323949,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,7,271127,ENSMUSG00000049538,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21389,cg01045442,-0.0000602,0.0000111,-5.439422639,0.000000109,loss,yes,0.0000859,0.0000188,4.573966686,0.00000693,pos,ns,0.018361824,0.005504195,3.335968816,0.000953362,pos,ns,3.020742208,-0.000304809,0.000189289,-1.610287463,0.108352857,neg,ns,0.79642571,Psmd7,Psmd7_Intergenic_upstream,8,107603437,107603486,107603485,107603486,50,-,ATTACTGCTTTATTTTGCTGTCTTGGTTTAAAATCATTTTAACCACTCCG,Distal Intergenic,8,107580381,107588464,8084,2,Psmd7-201,-15022,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,3,17463,ENSMUSG00000039067,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4199,cg05950040,0.000000859,0.000017,0.050379171,0.959852679,gain,ns,-0.000132437,0.000029,-4.5734875,0.00000694,neg,ns,0.029643567,0.008483585,3.494226558,0.000544696,pos,ns,3.263845825,-0.001240069,0.00029175,-4.250455403,0.0000283,neg,ns,0.660505052,Tasor,Tasor_threeUTR,14,27480651,27480700,27480699,27480700,50,+,TGACATTAACCCCTTTGGAGCTGGGAGTTGGGATTTCCCAACATTAAACG,3' UTR,14,27428834,27483555,54722,1,Tasor-201,51817,Ccdc66-202;Ccdc66-203;Ccdc66-201;Tasor-201;Tasor-204,Ccdc66;Ccdc66;Ccdc66;Tasor;Tasor,27760;3175;27745;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,3,218850,ENSMUSG00000040651,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21312,cg08391895,0.000112401,0.0000102,11.0263552,4.51E-24,gain,yes,-0.0000792,0.0000173,-4.57255211,0.00000697,neg,ns,0.042032264,0.005073562,8.284566541,3.61E-15,pos,yes,14.4423113,-0.001243929,0.000174479,-7.129374117,7.13E-12,neg,yes,0.83592508,Rbm15,Rbm15_Exon,3,107330210,107330259,107330210,107330211,50,-,CGCACCACGGACAATGATCATGACCAGGTAATCTTCTTCAGATTTGGCCA,"Exon (Rbm15-201/Rbm15, exon 1 of 2)",3,107325421,107333673,8253,2,Rbm15-201,3414,Rbm15-201;Rbm15-202,Rbm15;Rbm15,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,9,229700,ENSMUSG00000048109,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U4,Pr-F
25180,cg27735940,0.00000293,0.000009,0.325331183,0.745149896,gain,ns,0.0000699,0.0000153,4.567428185,0.00000713,pos,ns,0.001939991,0.004481083,0.432929065,0.665367353,pos,ns,0.176938512,0.000209819,0.000154104,1.361541941,0.174331208,pos,ns,0.58206096,Gm10051,Gm10051_Intergenic_downstream,5,133482428,133482477,133482476,133482477,50,+,CTTATCTAAATTTAGAACTAGGCCAGGCTTTGAGGCTTGCCCTTCGTTCG,Distal Intergenic,5,133475123,133475536,414,1,Gm10051-201,7305,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,3,100039731,ENSMUSG00000058905,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11020,cg08743477,-0.0000189,0.0000497,-0.379734458,0.704402549,loss,ns,0.00038567,0.0000845,4.566020481,0.00000718,pos,ns,0.073223503,0.024745462,2.959067904,0.003323422,pos,ns,2.478414543,-0.001036901,0.000850994,-1.218457512,0.223976628,neg,ns,0.489943565,Mbip,Mbip_Intergenic_downstream,12,56302089,56302138,56302089,56302090,50,+,CGATAAGTGCCTCATCAGTATCCTCATCATGCTCGTGTTGCTCCGCCGCG,Distal Intergenic,12,56340511,56345821,5311,2,Mbip-202,43683,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,12,13,217588,ENSMUSG00000021028,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
1973,cg01589578,0.00000309,0.00000868,0.355731838,0.722283344,gain,ns,0.0000674,0.0000148,4.565319482,0.0000072,pos,ns,-0.000315422,0.004322046,-0.072979866,0.941869204,neg,ns,0.026009403,0.000140806,0.000148635,0.94733095,0.344208025,pos,ns,0.705974597,Tfec,Tfec_Intergenic_downstream,6,16727592,16727641,16727640,16727641,50,-,ATTAATCTTATGGAAATCTCCTGAAGCCAGATTCCAGCAAGGTTGCCCCG,Distal Intergenic,6,16834692,16835263,572,2,Tfec-204,107671,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,19,23,21426,ENSMUSG00000029553,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9942,cg21064897,0.0000315,0.00000769,4.098873035,0.0000531,gain,ns,0.0000596,0.0000131,4.56519068,0.00000721,pos,ns,0.01750993,0.00382791,4.574279089,0.00000692,pos,ns,5.159995215,-0.000435473,0.000131642,-3.308018816,0.001050149,neg,ns,0.500761898,Hs6st2,Hs6st2_Exon,X,51680379,51680428,51680427,51680428,50,-,TTGTTGGATTTCTCATCCATGTTCCCGACGCTGGGGGAAACCCAAGCTCG,"Exon (Hs6st2-201/Hs6st2, exon 2 of 5)",20,51387212,51681703,294492,2,Hs6st2-201,1275,Hs6st2-201;Hs6st2-202;Hs6st2-204;Hs6st2-205;Hs6st2-203,Hs6st2;Hs6st2;Hs6st2;Hs6st2;Hs6st2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,6,50786,ENSMUSG00000062184,conserved gene but different region,X,51680404,51681589,1186,*,1186,115,0.697301855,0.813413965,0.096964587,2.22E-85,CpGisland,TRUE,U3,Pr-B
26356,cg15782392,0.00015096,0.00000918,16.4463208,3.93E-44,gain,yes,-0.0000712,0.0000156,-4.563005852,0.00000728,neg,ns,-0.010545987,0.004568447,-2.308440299,0.021632421,neg,ns,1.664894878,0.000424493,0.000157109,2.701909608,0.007273817,pos,ns,0.838065546,Kiz,Kiz_Intron,2,146958905,146958954,146958905,146958906,50,+,CGATGTTTATTGTATTATAAATCACGGGCAAGTAGGCAGATTGGCAACAG,"Intron (Kiz-201/Kiz, intron 12 of 13)",2,146855864,146970097,114234,1,Kiz-201,103041,Kiz-201;Kiz-202,Kiz;Kiz,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,29,228730,ENSMUSG00000074749,conserved gene and region,2,146958830,146958947,118,*,118,11,0.508474576,1.483428571,0.093220339,2.29E-08,CpGisland,TRUE,NA,NRS
25602,cg20198417,0.00000932,0.0000159,0.585080506,0.558919204,gain,ns,0.00012331,0.0000271,4.556534134,0.00000749,pos,ns,0.021040904,0.007928337,2.653885992,0.008367453,pos,ns,2.077406703,0.00000168,0.000272655,0.006163982,0.99508585,pos,ns,0.679913766,Ebf3,Ebf3_Intron,7,137306981,137307030,137306981,137306982,50,+,CGACAGCTACAATTGGAAAAAAATTAGGACACATTTTGCAACTAATTGAG,"Intron (Ebf3-204/Ebf3, intron 6 of 15)",7,137193673,137314445,120773,2,Ebf3-204,7415,Ebf3-204;Ebf3-201;Ebf3-202;Ebf3-203;Ebf3-208;Ebf3-206,Ebf3;Ebf3;Ebf3;Ebf3;Ebf3;Ebf3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,62,84,13593,ENSMUSG00000010476,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
20728,cg26114982,0.0000479,0.0000121,3.959254644,0.0000933,gain,ns,0.0000936,0.0000206,4.556152804,0.0000075,pos,ns,0.028390381,0.006021115,4.71513691,0.00000366,pos,ns,5.436951298,-0.000490249,0.000207066,-2.36759992,0.018517555,neg,ns,0.401994718,Zdhhc15,Zdhhc15_Exon,X,104670711,104670760,104670759,104670760,50,+,AGGACAATAACGAGCACTGGCACCCAGGACAGTACCCGGCGGCAGCACCG,Promoter (<=1kb),20,104536969,104671064,134096,2,Zdhhc15-201,304,Zdhhc15-201,Zdhhc15,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,108672,ENSMUSG00000033906,conserved gene and region,X,104670682,104671005,324,*,324,32,0.688271605,0.834782609,0.098765432,1.84E-24,CpGisland,TRUE,U2,Pr-W
1776,cg14280211,-0.00000438,0.0000121,-0.360341009,0.718837528,loss,ns,0.000094,0.0000206,4.555136667,0.00000754,pos,ns,0.011456587,0.006045294,1.895124767,0.059006068,pos,ns,1.229103321,0.000047,0.000207897,0.22620955,0.821187519,pos,ns,0.135467127,Kctd1,Kctd1_Promoter,18,15151715,15151764,15151763,15151764,50,+,TCTAACTTGCTTTTTACCCTCCTCTTGCACAGAAAAGCTGATTTTAATCG,Promoter (<=1kb),18,14968685,15151446,182762,2,Kctd1-201,-269,Kctd1-201,Kctd1,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,6,24,106931,ENSMUSG00000036225,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
10027,cg14002243,0.0000448,0.0000061,7.330760978,2.00E-12,gain,yes,-0.0000472,0.0000104,-4.55379831,0.00000758,neg,ns,-0.004155923,0.003038381,-1.367808246,0.172362825,neg,ns,0.763556396,0.000210938,0.00010449,2.018740398,0.044374884,pos,ns,0.86145391,Skap2,Skap2_Intron,6,51975873,51975922,51975921,51975922,50,+,TCCACCAGCCACAAACTTAGAAACAGTCTTGAATTATTTGTTGCTGACCG,"Intron (Skap2-205/Skap2, intron 4 of 12)",6,51857422,52012549,155128,2,Skap2-205,36627,Skap2-205;Skap2-201,Skap2;Skap2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,19,54353,ENSMUSG00000059182,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20316,cg04794183,0.000081,0.00000537,15.08210553,6.27E-39,gain,yes,-0.0000415,0.00000912,-4.55203606,0.00000764,neg,ns,0.000833356,0.002672912,0.31177822,0.75541866,pos,ns,0.121812292,0.00000665,0.0000919,0.072356884,0.942364557,pos,ns,0.166723268,Hoxc5,Hoxc5_Intron,15,102998073,102998122,102998073,102998074,50,-,CGCTACACAAATGCATCGCATTCCCGGTTGTTTGCAGAAAATTTACAGCT,"Intron (Hoxc5-202/Hoxc5, intron 1 of 1)",15,102967443,103015676,48234,1,Hoxc5-202,30630,Hoxc5-202;Hoxc6-202;Hoxc6-203;Hoxc8-201;Hoxc8-202,Hoxc5;Hoxc6;Hoxc6;Hoxc8;Hoxc8,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,46,134,15424,ENSMUSG00000022485,conserved gene but different region,15,102997967,102998098,132,*,132,9,0.613636364,0.776470588,0.068181818,0.00000904,CpGisland,TRUE,U13,Hc-P
17472,cg15562933,-0.0000284,0.0000096,-2.954565075,0.003370939,loss,ns,0.0000742,0.0000163,4.550265141,0.0000077,pos,ns,0.008174949,0.004777347,1.711190069,0.08804632,pos,ns,1.055288791,-0.000199021,0.000164293,-1.21137962,0.226672555,neg,ns,0.57300177,Gm12635,Gm12635_Intergenic_upstream,4,90438060,90438109,90438060,90438061,50,+,CGTGGTGATTGATTCCTTGCCAGTATGGCATCACCACAGGGAGTGCAGCT,Distal Intergenic,4,90452874,90453625,752,1,Gm12635-201,-14765,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,5,100417247,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18972,cg25479597,-0.000016,0.0000107,-1.504152447,0.133560219,loss,ns,0.0000823,0.0000181,4.548500756,0.00000776,pos,ns,-0.006073038,0.005301646,-1.145500441,0.252885449,neg,ns,0.597076159,0.000531173,0.000182323,2.913357378,0.003835555,pos,ns,0.848808095,Fbxl20,Fbxl20_Exon,11,98089619,98089668,98089619,98089620,50,+,CGCTGTCTGCTGCCCCCTACTGATGGGGGTGGAGTGACAGGTGCGAAGTA,"Exon (Fbxl20-201/Fbxl20, exon 15 of 15)",11,98082556,98149612,67057,2,Fbxl20-201,59944,Fbxl20-201;Fbxl20-202,Fbxl20;Fbxl20,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,72194,ENSMUSG00000020883,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22973,cg18416931,0.00000249,0.00000195,1.280412797,0.201357207,gain,ns,-0.000015,0.00000331,-4.545583094,0.00000786,neg,ns,-0.003341591,0.000968857,-3.449004299,0.000640537,neg,ns,3.193455792,0.0000564,0.0000333,1.693681798,0.091330231,pos,ns,0.9200054,Cnot2,Cnot2_threeUTR,10,116507106,116507155,116507106,116507107,50,-,CGGTAACTGAGTGCCTTGTGATAAGCTGCGATTTAACTGAGGGGTATTGT,3' UTR,10,116485161,116581511,96351,2,Cnot2-210,74356,Cnot2-210;Cnot2-204;Cnot2-212;Cnot2-203;Cnot2-202;Cnot2-213;Cnot2-209;Cnot2-214;Cnot2-215;Cnot2-205;Cnot2-207;Cnot2-211;Cnot2-217;Cnot2-216;Cnot2-206;Cnot2-201;Cnot2-208,Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,9,15,72068,ENSMUSG00000020166,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11157,cg11754189,-0.0000294,0.0000108,-2.728744728,0.006720486,loss,ns,0.0000831,0.0000183,4.541558253,0.00000801,pos,ns,0.012667082,0.005359458,2.363500731,0.018719914,pos,ns,1.72769616,-0.00037586,0.000184311,-2.039268649,0.04227101,neg,ns,0.24399813,Fhl1,Fhl1_Exon,X,56791383,56791432,56791383,56791384,50,+,CGTGGGTGGTGGTTCTTTATAGAAAAAATCGAAGCTTAGCAGCTCCTCGA,"Exon (Fhl1-203/Fhl1, exon 7 of 8)",20,56731787,56793346,61560,1,Fhl1-201,59596,Fhl1-201;Fhl1-203;Fhl1-206;Fhl1-205;Fhl1-204;Fhl1-202;Fhl1-210;Fhl1-207;Fhl1-208;Fhl1-209,Fhl1;Fhl1;Fhl1;Fhl1;Fhl1;Fhl1;Fhl1;Fhl1;Fhl1;Fhl1,0;0;0;0;0;0;11564;0;3658;3385,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,11,14199,ENSMUSG00000023092,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11026,cg25100008,-0.0000363,0.0000125,-2.91141993,0.003858775,loss,ns,0.0000963,0.0000212,4.539773695,0.00000807,pos,ns,0.021016736,0.006213866,3.382231785,0.000811201,pos,ns,3.090871502,-0.000309872,0.000213694,-1.450073459,0.148049008,neg,ns,0.235981371,Mbip,Mbip_Intergenic_downstream,12,56302191,56302240,56302191,56302192,50,-,CGCGCACAGTAATATGCAATAAAACAGCAAGAAGTGAATGTTAACCATCT,Distal Intergenic,12,56340511,56345821,5311,2,Mbip-202,43630,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,12,13,217588,ENSMUSG00000021028,conserved gene and region,12,56302089,56302194,106,*,106,9,0.566037736,1.07918552,0.08490566,0.0000015,CpGisland,TRUE,U2,Pr-W
5715,cg09909555,-0.00005,0.0000129,-3.867002502,0.000134276,loss,ns,0.0000995,0.000022,4.530524506,0.00000841,pos,ns,0.010082405,0.006431741,1.567601151,0.1179944,pos,ns,0.928138603,-0.000507697,0.000221187,-2.295328964,0.022381797,neg,ns,0.558737415,Kctd15,Kctd15_Intergenic_downstream,7,34606318,34606367,34606366,34606367,50,+,AGACACACGGCCTCAGGCAGCCTAAAACCTTTGGAGACCAAAATGGCTCG,Distal Intergenic,7,34640182,34648744,8563,2,Kctd15-206,42377,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,25,233107,ENSMUSG00000030499,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24199,cg26672023,0.0000329,0.0000107,3.074635044,0.002295123,gain,ns,-0.0000824,0.0000182,-4.530120269,0.00000842,neg,ns,0.015221118,0.005331138,2.855135119,0.004591953,pos,ns,2.338002544,-0.000618463,0.000183337,-3.373362372,0.000836823,neg,ns,0.820974776,Pabpc4,Pabpc4_threeUTR,4,123295719,123295768,123295767,123295768,50,-,ACACTGATGTGCATTTGCTGGTCTGTTGTAGGGTCTGAGTGCCCGGACCG,3' UTR,4,123282825,123298925,16101,1,Pabpc4-204,12894,Pabpc4-204;Pabpc4-203;Pabpc4-208;Pabpc4-202;Pabpc4-201;Pabpc4-205;Pabpc4-206,Pabpc4;Pabpc4;Pabpc4;Pabpc4;Pabpc4;Pabpc4;Pabpc4,0;0;0;0;0;0;-1412,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,5,230721,ENSMUSG00000011257,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22092,cg15309974,0.0000195,0.0000154,1.266119837,0.206420794,gain,ns,0.000118327,0.0000262,4.521245155,0.00000876,pos,ns,0.041781969,0.007667315,5.449361125,0.000000103,pos,ns,6.986239936,-0.000896017,0.000263678,-3.398144387,0.000767057,neg,ns,0.355867955,Pou3f4,Pou3f4_Exon,X,110814575,110814624,110814623,110814624,50,+,TCTCCAAAGTGATTACTTGCAGGGAGTTCCCAGCAATGGGCATCCCCTCG,Promoter (<=1kb),20,110814280,110817207,2928,1,Pou3f4-201,295,Pou3f4-201,Pou3f4,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,7,18994,ENSMUSG00000056854,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21972,cg10121219,0.0000264,0.00000422,6.272409475,1.19E-09,gain,yes,-0.0000324,0.00000716,-4.520976323,0.00000877,neg,ns,-0.004050323,0.002098113,-1.930459782,0.054461781,neg,ns,1.263908161,0.000138116,0.0000722,1.914182385,0.056517346,pos,ns,0.884986734,Phlpp2,Phlpp2_Exon,8,109876863,109876912,109876863,109876864,50,-,CGAGAAAGAGACTGGCTAAGAGAAGATGTAAAGAGAGGCTGTGTTTACCT,"Exon (Phlpp2-202/Phlpp2, exon 2 of 4)",8,109868542,109904971,36430,1,Phlpp2-202,8321,Phlpp2-202;Phlpp2-203;Phlpp2-201,Phlpp2;Phlpp2;Phlpp2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,244650,ENSMUSG00000031732,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15839,cg17331449,0.00000947,0.00000751,1.260317824,0.208502581,gain,ns,0.0000576,0.0000128,4.516546634,0.00000895,pos,ns,0.016210802,0.003739358,4.335183243,0.0000197,pos,ns,4.70526268,-0.000367175,0.000128596,-2.855257266,0.004590233,neg,ns,0.457049772,Scube1,Scube1_Exon,15,83651722,83651771,83651770,83651771,50,-,CTCAATTGCAGCCTCATCCTTCTCTAAAACACAAGTAAGGGACAAACACG,"Exon (Scube1-201/Scube1, exon 7 of 23)",15,83604999,83725021,120023,2,Scube1-204,73250,Scube1-204;Scube1-202;Scube1-201;Scube1-203;Scube1-205;Scube1-206,Scube1;Scube1;Scube1;Scube1;Scube1;Scube1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,8,64706,ENSMUSG00000016763,conserved gene but different region,15,83651770,83651878,109,*,109,9,0.660550459,0.762237762,0.082568807,0.0000019,CpGisland,TRUE,NA,NRS
27528,cg08760632,0.00000404,0.00000717,0.563646699,0.573402094,gain,ns,0.000055,0.0000122,4.516062838,0.00000896,pos,ns,0.003022377,0.003568912,0.846862224,0.397725207,pos,ns,0.400416883,0.0000448,0.000122735,0.365172664,0.71523154,pos,ns,0.571877221,Zfp64,Zfp64_Intergenic_upstream,2,169158811,169158860,169158859,169158860,50,+,TCCCCCTTGCTTTGACAAGTACGTAATTTTCTTCAGAGATGCTCTTCACG,Distal Intergenic,2,168893331,168955587,62257,2,Zfp64-203,-203224,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,11,22722,ENSMUSG00000027551,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19585,cg07459759,0.0000305,0.0000125,2.432218833,0.01557242,gain,ns,0.0000961,0.0000213,4.513610872,0.00000906,pos,ns,0.030757053,0.006237219,4.931212899,0.00000133,pos,ns,5.874664549,-0.000863385,0.000214497,-4.025151879,0.0000716,neg,ns,0.254364841,Eda,Eda_Promoter,X,99975104,99975153,99975104,99975105,50,-,CGTCTGTTAAACGCTTTGAAGATTGGAAGCAACAGATAAGTACTGGATGA,Promoter (<=1kb),20,99975606,100400762,425157,1,Eda-207,-502,Eda-211;Eda-208;Eda-209;Eda-202;Eda-203;Eda-206;Eda-205;Eda-207;Eda-204;Eda-201,Eda;Eda;Eda;Eda;Eda;Eda;Eda;Eda;Eda;Eda,0;0;0;0;0;0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,9,13607,ENSMUSG00000059327,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
10223,cg21447117,0.0000404,0.00000995,4.058830448,0.0000625,gain,ns,-0.0000763,0.0000169,-4.512048016,0.00000913,neg,ns,0.002741332,0.004950978,0.553695195,0.580186603,pos,ns,0.236432304,0.000170044,0.000170264,0.998709757,0.318714227,pos,ns,0.348383116,Hoxa11,Hoxa11_fiveUTR,6,52245778,52245827,52245826,52245827,50,+,CCTCTTTGAAGCGGATCCGTGAAGTAGAAATTTGGAGACGTAAGCTGACG,Promoter (<=1kb),6,52242106,52245810,3705,2,Hoxa11-201,0,Hoxa10-201;Hoxa10-204;Hoxa11-201;Hoxa11-202,Hoxa10;Hoxa10;Hoxa11;Hoxa11,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,18,15396,ENSMUSG00000038210,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
27247,cg25103781,0.0000678,0.0000129,5.251610408,0.000000281,gain,yes,0.0000989,0.0000219,4.509767449,0.00000922,pos,ns,0.019980291,0.00642319,3.110649455,0.002040345,pos,ns,2.690296464,-0.000171581,0.000220893,-0.776760063,0.437892627,neg,ns,0.320521015,Nhs,Nhs_Exon,X,161908764,161908813,161908764,161908765,50,+,CGCTCCATCAAAGCAGGGGCATCGGCCCCTCCACTGCTTCAATGCTGCAG,"Exon (Gm15202-201/Gm15202-201, exon 2 of 2)",20,161833296,162159730,326435,2,Nhs-202,250917,Nhs-202;Nhs-201,Nhs;Nhs,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,12,195727,ENSMUSG00000059493,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
7292,cg02347319,0.0000264,0.0000176,1.50014571,0.134594405,gain,ns,0.000134559,0.0000298,4.509031259,0.00000925,pos,ns,0.046931281,0.008742718,5.368042112,0.000000156,pos,ns,6.806112642,-0.00083156,0.000300661,-2.765768109,0.006019466,neg,ns,0.343049828,Stag2,Stag2_Intron,X,42151222,42151271,42151270,42151271,50,+,AGAAGGTGTGGGAAACAGCATCAAGTAGTTCCGCAAAACTTTGAGCCCCG,"Intron (Stag2-203/Stag2, intron 1 of 33)",20,42149317,42277185,127869,1,Stag2-203,1905,Stag2-203;Stag2-202;Stag2-207;Stag2-205;Stag2-208;Stag2-201;Stag2-204;Stag2-206,Stag2;Stag2;Stag2;Stag2;Stag2;Stag2;Stag2;Stag2,0;0;0;0;0;0;0;-909,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,7,20843,ENSMUSG00000025862,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
24921,cg08866851,0.0000267,0.00000763,3.498590793,0.000536194,gain,ns,-0.0000584,0.000013,-4.507937641,0.00000929,neg,ns,0.000629759,0.003797878,0.165818569,0.868407821,pos,ns,0.061276274,-0.0000686,0.000130609,-0.525385134,0.599691059,neg,ns,0.879193142,Tmem39b,Tmem39b_threeUTR,4,129684385,129684434,129684433,129684434,50,-,GCAGCAGGTCACAGTAGCTGGCAGGCAGCAGGTGCTGCATGAGGATCACG,3' UTR,4,129676355,129696796,20442,2,Tmem39b-202,12362,Tmem39b-202;Tmem39b-201,Tmem39b;Tmem39b,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,3,230770,ENSMUSG00000053730,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8844,cg19346212,0.0000397,0.0000102,3.900313833,0.000117828,gain,ns,-0.0000779,0.0000173,-4.506948801,0.00000933,neg,ns,0.032479266,0.005065344,6.412055863,5.35E-10,pos,ns,9.271782103,-0.00038452,0.000174197,-2.207391796,0.028018965,neg,ns,0.814512693,Vegfa,Vegfa_Exon,17,46021051,46021100,46021099,46021100,50,+,CAGGAACATTTACACGTCTGCGGATCTTGTACAAACAAATGCTTTCTCCG,"Exon (Vegfa-202/Vegfa, exon 6 of 7)",17,46016993,46031815,14823,2,Vegfa-201,10715,Vegfa-201;Vegfa-202;Vegfa-210;Vegfa-207;Vegfa-205;Vegfa-208;Vegfa-204;Vegfa-206;Vegfa-203;Vegfa-209,Vegfa;Vegfa;Vegfa;Vegfa;Vegfa;Vegfa;Vegfa;Vegfa;Vegfa;Vegfa,0;0;0;0;0;0;0;0;0;10256,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,7,22339,ENSMUSG00000023951,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4359,cg24246880,0.000224291,0.0000283,7.917692543,4.35E-14,gain,yes,-0.000216763,0.0000481,-4.50415691,0.00000945,neg,ns,-0.02721553,0.014099018,-1.930313786,0.054479935,neg,ns,1.263763415,0.000460948,0.000484864,0.950674763,0.342510089,pos,ns,0.42046946,Wnt5a,Wnt5a_Exon,14,28511616,28511665,28511616,28511617,50,+,CGAAATCAGATTTCCTGGTGAGGTTGCGTGGGTGGATTAATTTGGAAAAA,"Exon (Wnt5a-203/Wnt5a, exon 1 of 4)",14,28504750,28527448,22699,1,Wnt5a-201,6866,Wnt5a-201;Wnt5a-204;Wnt5a-206;Wnt5a-203;Wnt5a-202;Wnt5a-205,Wnt5a;Wnt5a;Wnt5a;Wnt5a;Wnt5a;Wnt5a,0;5716;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,8,22418,ENSMUSG00000021994,conserved gene but different region,14,28511548,28511643,96,*,96,8,0.583333333,0.990967742,0.083333333,0.00000859,CpGisland,TRUE,U13,Hc-P
22107,cg13552338,0.0000491,0.00000663,7.410691151,1.20E-12,gain,yes,-0.0000507,0.0000113,-4.502627691,0.00000951,neg,ns,-0.005349006,0.003298177,-1.621806829,0.105861291,neg,ns,0.975262814,0.0000711,0.000113424,0.62667799,0.531331549,pos,ns,0.798434919,Ctr9,Ctr9_Exon,7,111038394,111038443,111038394,111038395,50,+,CGTTTAGGAATGGGTCATTGCTTTGTGAAACTTAACAAACTGGAAAAAGC,"Exon (Ctr9-201/Ctr9, exon 6 of 25)",7,111028951,111056377,27427,1,Ctr9-201,9443,Ctr9-201;Ctr9-207;Ctr9-204;Ctr9-203,Ctr9;Ctr9;Ctr9;Ctr9,0;0;0;4358,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,22083,ENSMUSG00000005609,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
310,cg15746205,-0.0000222,0.00000703,-3.154029182,0.001768159,loss,ns,-0.0000538,0.0000119,-4.501254859,0.00000957,neg,ns,0.004567127,0.003499563,1.305056113,0.192841606,pos,ns,0.71479926,-0.000578481,0.00012035,-4.806664096,0.0000024,neg,ns,0.810092632,Ewsr1,Ewsr1_Exon,11,5080683,5080732,5080731,5080732,50,+,TGTAACCTGTAGCATATAAATGCGACAAAGCATGTTAAAAAGTTTCCACG,"Exon (Ewsr1-204/Ewsr1, exon 9 of 9)",11,5069689,5099266,29578,2,Ewsr1-203,18534,Ewsr1-203;Ewsr1-202;Ewsr1-205;Ewsr1-209;Ewsr1-212;Ewsr1-208;Ewsr1-211;Ewsr1-204;Ewsr1-210,Ewsr1;Ewsr1;Ewsr1;Ewsr1;Ewsr1;Ewsr1;Ewsr1;Ewsr1;Ewsr1,0;0;0;0;-2162;0;0;0;5304,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,8,14030,ENSMUSG00000009079,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25361,cg25667123,0.000124265,0.00000879,14.1345435,2.36E-35,gain,yes,-0.0000672,0.0000149,-4.500534182,0.0000096,neg,ns,-0.000157074,0.004375678,-0.035897055,0.971387547,neg,ns,0.012607468,0.000534378,0.000150479,3.551176795,0.000443059,pos,ns,0.703333498,Gm9341,Gm9341_Intergenic_downstream,7,135965754,135965803,135965802,135965803,50,-,CTGTGTTTGTCTTTGGCTCTCAGAAGGACAAAATTCACCATGTGGCGACG,Distal Intergenic,7,135952798,135953783,986,1,Gm9341-201,13005,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,27,28,668764,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17171,cg19710076,0.000184178,0.0000256,7.196685181,4.68E-12,gain,yes,-0.000195513,0.0000435,-4.496874034,0.00000976,neg,ns,0.044658754,0.012737458,3.506096208,0.000521863,pos,ns,3.282443427,-0.001407041,0.00043804,-3.212128632,0.00145601,neg,ns,0.62015257,Sall1,Sall1_Exon,8,89030317,89030366,89030317,89030318,50,-,CGCATCTGATGTGTCAACATGTGCTGCTTCAAATTACCCTTTGTGGAAAA,"Exon (Sall1-201/Sall1, exon 3 of 4)",8,89027235,89044162,16928,2,Sall1-201,13796,Sall1-201,Sall1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,15,58198,ENSMUSG00000031665,conserved gene and region,8,89030021,89030318,298,*,298,14,0.553691275,0.66709306,0.046979866,0.000000954,CpGisland,TRUE,U11,Tr-P
17291,cg24927174,0.000107973,0.0000121,8.920480779,4.12E-17,gain,yes,-0.0000925,0.0000206,-4.496429982,0.00000978,neg,ns,0.01216241,0.006024257,2.018906367,0.044357525,pos,ns,1.353032697,-0.00035269,0.000207174,-1.702389674,0.089684792,neg,ns,0.31110726,Shc1,Shc1_fiveUTR,3,89422286,89422335,89422286,89422287,50,+,CGGGGCTGGCTGCATCCCAACGACAAAGTCATGGGACCCGGGGTTTCCTA,5' UTR,3,89418443,89430015,11573,1,Shc1-201,3843,Cks1b-201;Cks1b-202;Cks1b-203;Shc1-201;Shc1-204;Shc1-210;Shc1-209;Shc1-205;Shc1-203;Shc1-208;Shc1-202;Shc1-206;Shc1-207,Cks1b;Cks1b;Cks1b;Shc1;Shc1;Shc1;Shc1;Shc1;Shc1;Shc1;Shc1;Shc1;Shc1,0;0;0;0;0;0;0;0;0;0;0;0;-2191,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,3,20416,ENSMUSG00000042626,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U4,Pr-F
15286,cg00080475,-0.0000328,0.0000113,-2.899265973,0.004007389,loss,ns,0.0000864,0.0000192,4.496080663,0.00000979,pos,ns,0.004113663,0.005629043,0.730792612,0.4654578,pos,ns,0.332119688,0.000171506,0.000193582,0.885960466,0.376325564,pos,ns,0.837110326,Gm8371,Gm8371_Intergenic_downstream,13,80195161,80195210,80195209,80195210,50,+,ATGAACATACTTAAGGATATATCAATACGCTCATAAATCATCTGCAGGCG,Distal Intergenic,13,80161328,80161879,552,1,Gm8371-201,33833,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,4,666933,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23353,cg11654257,0.000021,0.0000101,2.074645106,0.038844276,gain,ns,-0.0000773,0.0000172,-4.495344048,0.00000982,neg,ns,-0.009682141,0.005040329,-1.920934311,0.055656945,neg,ns,1.254480633,-0.000319919,0.000173337,-1.845653497,0.06589595,neg,ns,0.71110457,Smg1,Smg1_threeUTR,7,118135402,118135451,118135402,118135403,50,-,CGAGATTTCCTAGGTTTCCTCAGAGTAAGCCCCCAGTTGCATCACCACCG,3' UTR,7,118131308,118243637,112330,2,Smg1-201,108186,Smg1-201;Smg1-204;Smg1-207,Smg1;Smg1;Smg1,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,7,9,233789,ENSMUSG00000030655,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22193,cg15336560,0.0000506,0.0000183,2.766951863,0.005998186,gain,ns,0.000139537,0.0000311,4.492959839,0.00000993,pos,ns,0.036978177,0.009098596,4.064162987,0.0000612,pos,ns,4.213578666,-0.000520766,0.0003129,-1.664320372,0.097058828,neg,ns,0.393836515,Hdx,Hdx_Promoter,X,111697089,111697138,111697137,111697138,50,+,GTGTCCGATCATCAATTCTCATCATGATCGTGACGTCACAAAAGACAGCG,Promoter (<=1kb),20,111569933,111697079,127147,2,Hdx-201,-10,Hdx-202;Hdx-201,Hdx;Hdx,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,8,245596,ENSMUSG00000034551,conserved gene and region,X,111697031,111697165,135,*,135,10,0.533333333,1.062155783,0.074074074,0.00000108,CpGisland,TRUE,NA,NRS
2277,cg11293159,0.0000157,0.0000147,1.066880268,0.286856064,gain,ns,-0.000112493,0.000025,-4.491705813,0.00000998,neg,ns,0.054272495,0.007337248,7.396846177,1.31E-12,pos,yes,11.88116293,-0.001280186,0.000252327,-5.073512365,0.000000674,neg,yes,0.52593186,Gm28539,Gm28539_threeUTR,16,18896660,18896709,18896660,18896661,50,+,CGGTAACTCCCCTCGGCCTGCTGTCTGAAGGCACAGATGTTGGCTGCACA,3' UTR,16,18836584,18956247,119664,1,Gm28539-201,60076,Gm28539-201;Hira-202;Hira-201;Hira-206;Hira-208;Hira-203,Gm28539;Hira;Hira;Hira;Hira;Hira,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21907,cg11819496,0.0000118,0.00000896,1.311661753,0.190604849,gain,ns,0.0000684,0.0000152,4.490130209,0.0000101,pos,ns,0.029421847,0.004459774,6.597161224,1.81E-10,pos,yes,9.742235323,-0.001019909,0.000153371,-6.649938098,1.32E-10,neg,yes,0.114022685,Bdnf,Bdnf_Intron,2,109692288,109692337,109692288,109692289,50,+,CGGAACTCTTCTAATAAAAGATGTATCATTTTAAATGCGCTGAATTTTGA,"Intron (Bdnf-201/Bdnf, intron 1 of 1)",2,109674700,109727007,52308,1,Bdnf-201,17588,Bdnf-201;Bdnf-207;Bdnf-208;Bdnf-210;Bdnf-206;Bdnf-209;Bdnf-211;Bdnf-205;Bdnf-203;Bdnf-204,Bdnf;Bdnf;Bdnf;Bdnf;Bdnf;Bdnf;Bdnf;Bdnf;Bdnf;Bdnf,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,18,12064,ENSMUSG00000048482,conserved gene and region,2,109692288,109692501,214,*,214,13,0.53271028,0.869375,0.060747664,0.000000147,CpGisland,TRUE,NA,NRS
20521,cg00426154,0.0000312,0.00000411,7.59304929,3.71E-13,gain,yes,-0.0000313,0.00000697,-4.487761576,0.0000102,neg,ns,-0.001567587,0.002043227,-0.767211169,0.443539889,neg,ns,0.353067317,0.00020659,0.0000703,2.940090806,0.003527923,pos,ns,0.842996948,Mycbp2,Mycbp2_Exon,14,103269372,103269421,103269372,103269373,50,+,CGTTTATGCTTTAGCTGTGCTGGATGGGATCTGAGTCTGGCTAGAGCCTG,"Exon (Mycbp2-202/Mycbp2, exon 18 of 83)",14,103113411,103346418,233008,2,Mycbp2-202,76997,Mycbp2-202;Mycbp2-201;Mycbp2-209;Mycbp2-208,Mycbp2;Mycbp2;Mycbp2;Mycbp2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,6,105689,ENSMUSG00000033004,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27281,cg13471083,-0.0000577,0.0000112,-5.137036472,0.000000495,loss,yes,0.0000855,0.0000191,4.484746388,0.0000103,pos,ns,-0.003590827,0.005585835,-0.642845087,0.520799803,neg,ns,0.283329189,0.000285894,0.000192096,1.488283245,0.137692734,pos,ns,0.844968158,Gtsf1l,Gtsf1l_Intergenic_upstream,2,163119109,163119158,163119109,163119110,50,-,CGTTCCTCAAATGGATAGTGATAGGTGATCTAAAAAATAATCTTTAAAAA,Distal Intergenic,2,163087034,163087855,822,2,Gtsf1l-201,-31303,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,5,68236,ENSMUSG00000070708,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27909,cg17829746,0.0000448,0.00001,4.466974488,0.0000111,gain,ns,-0.0000764,0.000017,-4.485262133,0.0000103,neg,ns,0.007445813,0.004992973,1.491258247,0.136910557,pos,ns,0.863563063,-0.000281139,0.000171708,-1.637309767,0.102580424,neg,ns,0.79674607,Prox1,Prox1_Exon,1,190161904,190161953,190161904,190161905,50,-,CGCTGGCTTGGAAACTGGGCTCCGTGCCACCATTTTTGTTCATGTTATTT,"Exon (Prox1-202/Prox1, exon 2 of 5)",1,190118035,190170714,52680,2,Prox1-202,8761,Prox1-202;Prox1-201;Prox1-203,Prox1;Prox1;Prox1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,19,59,19130,ENSMUSG00000010175,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2803,cg03663497,-0.0000449,0.0000117,-3.832881024,0.000153364,loss,ns,0.0000893,0.0000199,4.485501135,0.0000103,pos,ns,-0.000130765,0.005834985,-0.022410558,0.982134876,neg,ns,0.007828867,0.0000246,0.000200665,0.122772598,0.902366728,pos,ns,0.798873393,Ccdc178,Ccdc178_Intron,18,21845300,21845349,21845348,21845349,50,+,AAAGCTGATGAGTAAAATATTTCTACTTCACCCAGTTTAACTCAAAACCG,"Intron (Ccdc178-204/Ccdc178, intron 22 of 23)",18,21810893,22171442,360550,2,Ccdc178-204,326093,Ccdc178-204;Ccdc178-201;Ccdc178-202,Ccdc178;Ccdc178;Ccdc178,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,19,21,70950,ENSMUSG00000024306,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26284,cg24383169,0.0000954,0.00000689,13.84200372,2.94E-34,gain,yes,-0.0000525,0.0000117,-4.482584869,0.0000104,neg,ns,0.000766017,0.003429284,0.223375116,0.823390693,pos,ns,0.084394046,-0.00022861,0.000117933,-1.938473388,0.053473043,neg,ns,0.727743829,Ralgapa2,Ralgapa2_Intron,2,146262373,146262422,146262421,146262422,50,-,GGCCTGAGTGGCCGTCTGGCGAACAGGCACTCTGACACTAAGCTGGCACG,"Intron (A930019D19Rik-201/A930019D19Rik-201, intron 2 of 3)",2,146239879,146512004,272126,2,Ralgapa2-202,249582,Ralgapa2-202;Ralgapa2-211;Ralgapa2-210;Ralgapa2-203;Ralgapa2-205;Ralgapa2-208,Ralgapa2;Ralgapa2;Ralgapa2;Ralgapa2;Ralgapa2;Ralgapa2,0;0;0;-998;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,26,241694,ENSMUSG00000037110,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23503,cg22347395,-0.0000188,0.00000788,-2.385179132,0.017671399,loss,ns,0.00006,0.0000134,4.479338553,0.0000105,pos,ns,0.008649762,0.003922001,2.205445758,0.028156508,pos,ns,1.550421204,-0.000259828,0.000134877,-1.926400703,0.054968419,neg,ns,0.874397903,Gm18441,Gm18441_Intergenic_downstream,12,118720766,118720815,118720814,118720815,50,-,TATTTTTCTTTTTTAGACTTAACCTGGATTATGTCAACACAAAATTTACG,Distal Intergenic,12,118732439,118733055,617,2,Gm18441-201,12289,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,9,100417195,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1268,cg24690041,0.000100115,0.000016,6.248357757,1.37E-09,gain,yes,-0.000121898,0.0000272,-4.478203271,0.0000106,neg,ns,-0.0255243,0.007974611,-3.2006953,0.00151308,neg,ns,2.820138025,0.000568626,0.000274246,2.073414334,0.038959386,pos,ns,0.675366827,Zfr,Zfr_Exon,15,12149651,12149700,12149699,12149700,50,+,CTCTGCGATGTGTCTTGTACAGGAGCAGATGCGTATGCTGCCCACATTCG,"Exon (Zfr-201/Zfr, exon 7 of 20)",15,12117831,12185683,67853,1,Zfr-201,31820,Zfr-201;Zfr-210;Zfr-203,Zfr;Zfr;Zfr,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,12,22763,ENSMUSG00000022201,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15126,cg08662919,-0.000025,0.0000102,-2.461226902,0.014390795,loss,ns,0.0000772,0.0000173,4.475394572,0.0000107,pos,ns,0.013190521,0.005055043,2.609378702,0.009510674,pos,ns,2.021788717,-0.000193473,0.000173842,-1.112919921,0.266605065,neg,ns,0.393751919,Gm48470,Gm48470_Intergenic_downstream,13,79277995,79278044,79277995,79277996,50,-,CGTGGGGTGGTTCCTATTTCTGTCGGCAAATACAAATTTTTCACTCAGCA,Distal Intergenic,13,79441143,79441407,265,2,Gm48470-201,163412,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,20,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4931,cg17030869,0.0000697,0.0000102,6.847934169,4.03E-11,gain,yes,-0.0000773,0.0000173,-4.473202036,0.0000108,neg,ns,0.021338663,0.005062723,4.214859363,0.0000328,pos,ns,4.483829626,-0.000851291,0.000174107,-4.889480109,0.00000163,neg,yes,0.859414432,Mkln1,Mkln1_Exon,6,31468209,31468258,31468257,31468258,50,+,TTGGATTCCTCTGTGAGGAACAGCAAATCTCTGAAAAGTGACTTCTATCG,"Exon (Mkln1-201/Mkln1, exon 10 of 18)",6,31398735,31516811,118077,1,Mkln1-201,69474,Mkln1-201;Mkln1-204;Mkln1-210;Mkln1-208;Mkln1-207,Mkln1;Mkln1;Mkln1;Mkln1;Mkln1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,27418,ENSMUSG00000025609,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25429,cg09035645,0.00000416,0.0000109,0.381598962,0.703020279,gain,ns,0.0000828,0.0000185,4.473320727,0.0000108,pos,ns,0.001317759,0.005424032,0.242948151,0.808206235,pos,ns,0.092477804,0.000215188,0.000186532,1.153622993,0.249543418,pos,ns,0.77843457,Gm5904,Gm5904_Intergenic_upstream,7,136490830,136490879,136490830,136490831,50,-,CGCAGGAATTGGGCAGTCAGCAAGAGCCAGAGAGTGCTGGCATGTATCAT,Distal Intergenic,7,136657209,136658073,865,1,Gm5904-201,-166379,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,14,17,546009,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22716,cg22891062,-0.0000252,0.00000944,-2.668763414,0.008013811,loss,ns,0.0000717,0.000016,4.470964873,0.0000109,pos,ns,-0.004816858,0.004696552,-1.025615795,0.305872343,neg,ns,0.51445979,0.000281424,0.000161514,1.742411391,0.082428176,pos,ns,0.698831227,Meis2,Meis2_Intergenic_downstream,2,115813473,115813522,115813521,115813522,50,-,CTAAGAAAGTTCTTGACACCAGCGATTGCTTTTCAGCACCACTGCTTCCG,Distal Intergenic,2,115864227,115868867,4641,2,Meis2-219,55394,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,97,17536,ENSMUSG00000027210,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1796,cg25474998,-0.000000047,0.0000121,-0.003874535,0.996911068,loss,ns,0.0000922,0.0000206,4.470990441,0.0000109,pos,ns,0.014979141,0.006041155,2.479516093,0.013687295,pos,ns,1.863682381,-0.000250786,0.000207755,-1.207125499,0.228304073,neg,ns,0.819200034,Gm5513,Gm5513_Intergenic_upstream,19,15340637,15340686,15340637,15340638,50,-,CGCTTCACACACTAATTAGTTGCCTGCTCTCCACTGAGATGTCAGACCCT,Distal Intergenic,19,14959549,14960766,1218,2,Gm5513-201,-379920,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,22,433225,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27649,cg20925015,-0.000011,0.00000638,-1.730519613,0.084532617,loss,ns,-0.0000485,0.0000108,-4.469978248,0.000011,neg,ns,0.012452204,0.003176934,3.919566345,0.000109212,pos,ns,3.961729373,-0.000436089,0.000109255,-3.991500925,0.000082,neg,ns,0.842826929,Gm20721,Gm20721_threeUTR,2,174345243,174345292,174345243,174345244,50,+,CGTGTCCTGACTTCTGGAATCTTTGAGACCAAGTTCCAGGTGGACAAAGT,3' UTR,2,174330319,174346712,16394,2,Gm20721-201,1420,Gm20721-201;Gnas-211;Gnas-215;Gnas-201;Gnas-209;Gnas-220;Gnas-223;Gnas-224;Gnas-203;Gnas-212;Gnas-221;Gnas-202;Gnas-218;Gnas-207;Gnas-226;Gnas-208;Gnas-206;Gnas-216;Gnas-228;Gnas-225;Gnas-213,Gm20721;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,9,10,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18472,cg27029166,0.0000389,0.00000529,7.354303689,1.73E-12,gain,yes,-0.0000402,0.00000899,-4.467419866,0.0000111,neg,ns,-0.00620465,0.002633696,-2.355871543,0.019101714,neg,ns,1.718927669,-0.000083,0.0000906,-0.916197765,0.360275345,neg,ns,0.824508519,Prpf3,Prpf3_threeUTR,3,95849691,95849740,95849739,95849740,50,+,ACACCGGTGGTAGGCTTTGGGTGACATCCCCTCTTCACTAGGAGGGCTCG,3' UTR,3,95830124,95855885,25762,2,Prpf3-201,6145,Prpf3-201;Prpf3-204;Prpf3-207;Prpf3-208;Prpf3-206;Prpf3-203;Prpf3-205,Prpf3;Prpf3;Prpf3;Prpf3;Prpf3;Prpf3;Prpf3,0;0;0;-4524;-3515;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,6,70767,ENSMUSG00000015748,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19841,cg21138313,0.0000309,0.0000108,2.869991154,0.004387024,gain,ns,0.0000816,0.0000183,4.466131074,0.0000112,pos,ns,0.022093807,0.005352718,4.127586974,0.0000472,pos,ns,4.326356568,-0.000373017,0.00018408,-2.026389602,0.043580788,neg,ns,0.61124073,Nlgn3,Nlgn3_Intron,X,101302738,101302787,101302738,101302739,50,+,CGGGAGGATGCTGGCTCCACCAGGCCCCCCTGTTGCCATTCCACCTGCTT,"Intron (Gm21986-201/Gm21986-201, intron 5 of 10)",20,101299168,101325963,26796,1,Nlgn3-202,3570,Nlgn3-202;Nlgn3-203;Nlgn3-206;Nlgn3-201;Nlgn3-205,Nlgn3;Nlgn3;Nlgn3;Nlgn3;Nlgn3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,16,245537,ENSMUSG00000031302,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10064,cg05042466,-0.00000962,0.00000786,-1.223732608,0.221982412,loss,ns,0.0000596,0.0000134,4.46460874,0.0000112,pos,ns,0.004311677,0.00391162,1.102273994,0.271197594,pos,ns,0.566714167,-0.0000159,0.00013452,-0.118436712,0.905798345,neg,ns,0.360845712,Rps8-ps3,Rps8-ps3_Intergenic_downstream,6,52119366,52119415,52119414,52119415,50,-,TTGGTCTGTGCTGTGGGATGTAGCATAAATTATCTGCCTTCAGCAAAACG,Downstream (<1kb),6,52118242,52118891,650,1,Rps8-ps3-201,1173,Rps8-ps3-201,Rps8-ps3,1124,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,1,1,666391,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10678,cg25813765,0.00000366,0.0000158,0.231866906,0.816794372,gain,ns,0.000119722,0.0000268,4.464062483,0.0000113,pos,ns,0.011806739,0.007857068,1.50269011,0.133936947,pos,ns,0.873099603,0.000148061,0.000270204,0.547960399,0.584113434,pos,ns,0.506773265,Unc5a,Unc5a_Promoter,13,54948259,54948308,54948259,54948260,50,-,CGAGAGAGGGCCTCGTGTCTCAAGAAATATAGGAGAGCTCATATCTCTTT,Promoter (1-2kb),13,54949411,55006018,56608,1,Unc5a-202,-1152,Unc5a-201;Unc5a-202,Unc5a;Unc5a,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,12,107448,ENSMUSG00000025876,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
24378,cg05916870,0.0000486,0.0000131,3.712934316,0.000242863,gain,ns,-0.0000992,0.0000222,-4.460218126,0.0000115,neg,ns,0.029022328,0.006516076,4.453957707,0.0000118,pos,ns,4.928723102,-0.000426799,0.000224087,-1.904609491,0.057756267,neg,ns,0.474229836,Chd4,Chd4_Promoter,6,125089891,125089940,125089891,125089892,50,-,CGTAACCAGTAAAACAGGCGGCCAGCTATTATGGGATGGCTGCTCCCAGC,Promoter (6-7kb),6,125095981,125130591,34611,1,Chd4-201,-6090,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,4,15,107932,ENSMUSG00000063870,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
15007,cg20212912,-0.0000437,0.0000161,-2.719770143,0.006901158,loss,ns,0.000121759,0.0000273,4.45714649,0.0000116,pos,ns,0.003091855,0.008003183,0.386328164,0.699518667,pos,ns,0.155200692,0.000108906,0.000275229,0.395694267,0.692602763,pos,ns,0.630776302,Pou4f2,Pou4f2_Promoter,8,78438837,78438886,78438837,78438838,50,-,CGGGAGACACCGCGCTTCACTGTGTAATCTGCTATGCCTCATCTGATTTG,Promoter (2-3kb),8,78433010,78436645,3636,2,Pou4f2-201,-2241,Pou4f2-201,Pou4f2,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,6,23,18997,ENSMUSG00000031688,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
8842,cg16555117,-0.0000103,0.0000115,-0.893461921,0.372302937,loss,ns,-0.0000873,0.0000196,-4.456529263,0.0000117,neg,ns,0.029692031,0.005738102,5.174538269,0.000000411,pos,ns,6.38592169,-0.000441852,0.000197333,-2.239117912,0.025857341,neg,ns,0.846841807,Vegfa,Vegfa_Exon,17,46021035,46021084,46021035,46021036,50,-,CGAGTCTGTGTTTTTGCAGGAACATTTACACGTCTGCGGATCTTGTACAA,"Exon (Vegfa-202/Vegfa, exon 6 of 7)",17,46016993,46031815,14823,2,Vegfa-201,10731,Vegfa-201;Vegfa-202;Vegfa-210;Vegfa-207;Vegfa-205;Vegfa-208;Vegfa-204;Vegfa-206;Vegfa-203;Vegfa-209,Vegfa;Vegfa;Vegfa;Vegfa;Vegfa;Vegfa;Vegfa;Vegfa;Vegfa;Vegfa,0;0;0;0;0;0;0;0;0;10272,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,7,22339,ENSMUSG00000023951,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21679,cg17208028,0.000252403,0.0000147,17.19070299,5.51E-47,gain,yes,-0.000110972,0.0000249,-4.448898155,0.000012,neg,ns,0.009826823,0.007307646,1.344731658,0.179694949,pos,ns,0.745464129,-0.000198624,0.000251309,-0.790358327,0.429922717,neg,ns,0.488831877,Zfhx3,Zfhx3_Intron,8,108823101,108823150,108823149,108823150,50,-,GTTTGTAAATACATGAGCCACTCAAAGGCTTGTGGTTAGTGTACACTCCG,"Intron (Zfhx3-204/Zfhx3, intron 9 of 15)",8,107942644,108961630,1018987,1,Zfhx3-204,880457,Zfhx3-204;Zfhx3-201,Zfhx3;Zfhx3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,114,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
26860,cg15517131,0.00000804,0.00000182,4.412391408,0.0000141,gain,ns,0.0000138,0.0000031,4.449747639,0.000012,pos,ns,0.001879826,0.000906903,2.072797575,0.03901718,pos,ns,1.408744126,0.000064,0.0000312,2.052867866,0.040924465,pos,ns,0.045558083,4930404H24Rik,4930404H24Rik_Exon,2,153492881,153492930,153492929,153492930,50,+,TCTCACACAGTAATTAGATACCAGCTGTCAGTGCAGGGGGGACGGCTCCG,Promoter (<=1kb),2,153492790,153493841,1052,1,4930404H24Rik-201,91,4930404H24Rik-201;Nol4l-201;Nol4l-203,4930404H24Rik;Nol4l;Nol4l,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,4,78151,NA,mapped to different genes,2,153492923,153493123,201,*,201,27,0.776119403,0.892598684,0.134328358,1.13E-24,CpGisland,TRUE,NA,NRS
9287,cg02745872,0.00000514,0.00000392,1.312137961,0.190444344,gain,ns,-0.0000296,0.00000666,-4.449118678,0.000012,neg,ns,0.003896117,0.001950221,1.997782806,0.04661369,pos,ns,1.331486519,-0.0000998,0.0000671,-1.487637952,0.137862848,neg,ns,0.879802302,Foxp4,Foxp4_Intron,17,47914882,47914931,47914930,47914931,50,-,AGATTACTCCGCTTAACTACAGCATGTCCACAACACCCTTGTTAATTGCG,"Intron (Foxp4-204/Foxp4, intron 1 of 16)",17,47867133,47924645,57513,2,Foxp4-204,9714,Foxp4-204;Foxp4-203;Foxp4-201;Foxp4-202;Foxp4-207,Foxp4;Foxp4;Foxp4;Foxp4;Foxp4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,25,74123,ENSMUSG00000023991,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21234,cg05176833,0.000102913,0.0000079,13.02967861,3.02E-31,gain,yes,-0.0000597,0.0000134,-4.447189289,0.0000121,neg,ns,-0.009892877,0.00393108,-2.516579729,0.012354562,neg,ns,1.908172661,0.0000825,0.00013519,0.610257453,0.542138378,pos,ns,0.774561524,Dock3,Dock3_Exon,9,106908482,106908531,106908482,106908483,50,+,CGTGGGGTGCTGGTGCCTGAACATGCAGGACTTAGCTTATCCAAACCTGG,"Exon (Dock3-201/Dock3, exon 47 of 53)",9,106892825,107231909,339085,2,Dock3-201,323378,Dock3-201;Dock3-211;Dock3-204;Dock3-206,Dock3;Dock3;Dock3;Dock3,0;0;0;4925,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,9,208869,ENSMUSG00000039716,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24056,cg20891401,0.000093,0.0000119,7.824272919,8.11E-14,gain,yes,-0.0000898,0.0000202,-4.446301044,0.0000122,neg,ns,0.04477801,0.005913644,7.571982902,4.25E-13,pos,yes,12.37157832,-0.000474863,0.00020337,-2.334972858,0.020182826,neg,ns,0.639842241,Shf,Shf_Intron,2,122354516,122354565,122354564,122354565,50,+,CTTCAGCACTGATAATATTGTTTCTTTCTCCTCCTCAGAGTTCATTACCG,"Intron (Shf-201/Shf, intron 3 of 5)",2,122348892,122366828,17937,2,Shf-201,12263,Shf-201;Shf-203;Shf-208;Shf-204;Shf-210;Shf-206;Shf-205;Shf-202;Shf-209;Shf-207,Shf;Shf;Shf;Shf;Shf;Shf;Shf;Shf;Shf;Shf,0;0;0;0;0;0;0;0;0;-385,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,435684,ENSMUSG00000033256,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19455,cg09189256,-0.00000245,0.00000348,-0.705344011,0.481125827,loss,ns,0.0000263,0.00000591,4.446114395,0.0000122,pos,ns,0.002202214,0.001730152,1.272844113,0.204027119,pos,ns,0.690312103,0.0000654,0.0000595,1.100002083,0.272184681,pos,ns,0.946973463,Gm12689,Gm12689_Intergenic_downstream,4,99355421,99355470,99355421,99355422,50,-,CGGTCACTTGACCTCAGATGTAACTTCTGTCGAATACCATCATTTTAACA,Distal Intergenic,4,99295900,99297258,1359,1,Gm12689-201,59570,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,12,26,100137011,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22776,cg20233898,-0.0000392,0.00000601,-6.525253693,2.77E-10,loss,yes,-0.0000454,0.0000102,-4.442401146,0.0000124,neg,ns,0.009661496,0.002992768,3.228281136,0.001378775,pos,ns,2.860506623,-0.000371253,0.000102921,-3.607159003,0.00036071,neg,ns,0.83166182,Sap30bp,Sap30bp_Exon,11,115938018,115938067,115938018,115938019,50,+,CGATTCAGAGACTGAAAAACCTGAGGCTGATGACCCAAAGGTATTTGGTG,"Exon (Sap30bp-203/Sap30bp, exon 3 of 11)",11,115933282,115966725,33444,1,Sap30bp-203,4736,Recql5-201;Recql5-205;Recql5-206;Recql5-203;Sap30bp-203;Sap30bp-204;Sap30bp-202;Sap30bp-201,Recql5;Recql5;Recql5;Recql5;Sap30bp;Sap30bp;Sap30bp;Sap30bp,-4541;-4541;-4541;-4541;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,57230,ENSMUSG00000020755,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14569,cg21244191,0.0000232,0.0000108,2.143342638,0.032863594,gain,ns,0.0000817,0.0000184,4.442858832,0.0000124,pos,ns,0.018870592,0.005384591,3.504554384,0.000524777,pos,ns,3.2800248,-0.000434706,0.000185176,-2.347533019,0.01952682,neg,ns,0.416427924,Scrt1,Scrt1_threeUTR,15,76516473,76516522,76516473,76516474,50,+,CGGGCCCTACTTGTAGAATCAGTACAAAATAGGTGCTACCTAAACGTTCC,3' UTR,15,76516203,76522499,6297,2,Scrt1-201,5977,Dgat1-201;Dgat1-210;Dgat1-212;Dgat1-211;Dgat1-209;Scrt1-201;Scrt1-202,Dgat1;Dgat1;Dgat1;Dgat1;Dgat1;Scrt1;Scrt1,-4522;-4793;-4799;-4520;-4647;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,6,170729,ENSMUSG00000048385,conserved gene and region,15,76516237,76516474,238,*,238,25,0.726890756,0.812175812,0.105042017,6.43E-20,CpGisland,TRUE,U13,Hc-P
23372,cg13989363,-0.0000228,0.0000145,-1.576615703,0.115903877,loss,ns,0.00010926,0.0000246,4.439418788,0.0000126,pos,ns,0.008755458,0.007210279,1.214302258,0.225556534,pos,ns,0.646744588,-0.0000251,0.000247961,-0.101319476,0.919362356,neg,ns,0.502078294,Sox21,Sox21_Intergenic_downstream,14,118194771,118194820,118194771,118194772,50,-,CGGATTCCTTCCAACATATGTTTTTGCCAGATAAGTAAACAGTGTGTGTC,Distal Intergenic,14,118233232,118237030,3799,2,Sox21-201,42259,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,26,27,223227,ENSMUSG00000061517,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
270,cg16988131,-0.00000507,0.00000987,-0.513480812,0.607980793,loss,ns,0.0000745,0.0000168,4.438823142,0.0000126,pos,ns,0.010473585,0.004914654,2.131092911,0.03386803,pos,ns,1.470210063,-0.000138538,0.000169015,-0.819680685,0.413027916,neg,ns,0.379317408,Npas4,Npas4_threeUTR,19,4984364,4984413,4984412,4984413,50,-,CAAACTGGACTTTATTATAAAGTTGGCTACAAAGTCACCGCAGCACCACG,3' UTR,19,4984355,4989971,5617,2,Npas4-202,5558,Npas4-202;Npas4-201;Npas4-203,Npas4;Npas4;Npas4,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,14,16,225872,ENSMUSG00000045903,conserved gene and region,19,4984402,4984672,271,*,271,24,0.63099631,0.889740082,0.088560886,2.74E-17,CpGisland,TRUE,U13,Hc-P
5429,cg03653137,0.00000963,0.0000202,0.475355275,0.634868528,gain,ns,-0.00015269,0.0000344,-4.438766802,0.0000126,neg,ns,0.004004062,0.010077809,0.39731478,0.69140877,pos,ns,0.160265116,-0.001845416,0.000346575,-5.324722877,0.000000195,neg,yes,0.676652257,Rgl2,Rgl2_Exon,17,33932702,33932751,33932750,33932751,50,+,TGGTGTTCCTCGCTGACCACTTGGCCGAACAGCTGACCCTGCTAGATGCG,"Exon (Rgl2-201/Rgl2, exon 6 of 18)",17,33929582,33937687,8106,1,Rgl2-201,3120,Rgl2-202;Rgl2-201;Rgl2-205;Rgl2-203;Rgl2-213;Rgl2-210;Rgl2-214;Rgl2-212;Rgl2-207;Rgl2-204;Rgl2-209;Rgl2-208;Rgl2-206;Rgl2-211;Tapbp-201;Tapbp-206;Tapbp-207;Tapbp-204,Rgl2;Rgl2;Rgl2;Rgl2;Rgl2;Rgl2;Rgl2;Rgl2;Rgl2;Rgl2;Rgl2;Rgl2;Rgl2;Rgl2;Tapbp;Tapbp;Tapbp;Tapbp,3159;0;2798;2728;0;1819;0;1794;1767;0;0;0;0;0;13370;13065;12175;6584,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,19732,ENSMUSG00000041354,mapped to different genes,17,33932533,33932751,219,*,219,13,0.657534247,0.550890093,0.059360731,0.000000192,CpGisland,TRUE,NA,NRS
20787,cg18851363,0.0000911,0.0000126,7.257405902,3.19E-12,gain,yes,-0.0000946,0.0000213,-4.436817566,0.0000127,neg,ns,0.022885964,0.006247084,3.663463827,0.000292555,pos,ns,3.533792685,-0.000640843,0.000214837,-2.982932623,0.003081663,neg,ns,0.791439266,D230025D16Rik,D230025D16Rik_Exon,8,105234475,105234524,105234523,105234524,50,+,TTTGTAGTCTCCTCTAAGCCATGACCTCATTCTTAACCTGACTCAGGACG,"Exon (D230025D16Rik-201/D230025D16Rik, exon 3 of 16)",8,105225145,105253053,27909,1,D230025D16Rik-201,9330,D230025D16Rik-201;D230025D16Rik-206;D230025D16Rik-205;D230025D16Rik-202;D230025D16Rik-203,D230025D16Rik;D230025D16Rik;D230025D16Rik;D230025D16Rik;D230025D16Rik,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,2,234678,ENSMUSG00000031889,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5985,cg08320045,0.0000102,0.0000136,0.744133914,0.457359135,gain,ns,-0.000102874,0.0000232,-4.436851722,0.0000127,neg,ns,-0.014218397,0.006792773,-2.093165478,0.037146868,neg,ns,1.430077799,-0.000267071,0.000233603,-1.143269339,0.253808899,neg,ns,0.772707132,Ddr1,Ddr1_Exon,17,35686496,35686545,35686544,35686545,50,+,GTTTGGCCCAGGCGGGTGTGGGGGGGCCCGGGCCTCGAGGGGGACGGGCG,"Exon (Ddr1-204/Ddr1, exon 12 of 18)",17,35681567,35700610,19044,2,Ddr1-204,14065,Ddr1-204;Ddr1-203;Ddr1-212;Ddr1-202;Ddr1-201;Ddr1-211;Ddr1-210;Ddr1-209;Ddr1-205;Ddr1-208;Ddr1-207,Ddr1;Ddr1;Ddr1;Ddr1;Ddr1;Ddr1;Ddr1;Ddr1;Ddr1;Ddr1;Ddr1,0;0;0;0;0;0;0;17432;18076;11426;15501,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,12305,ENSMUSG00000003534,conserved gene and region,17,35686508,35686619,112,*,112,10,0.714285714,0.903954802,0.089285714,0.000000188,CpGisland,TRUE,U11,Tr-P
23242,cg21648373,0.0000752,0.00000961,7.827315658,7.94E-14,gain,yes,-0.0000724,0.0000163,-4.433578435,0.0000129,neg,ns,-0.004737681,0.004783687,-0.9903828,0.322759438,neg,ns,0.491121049,0.000148806,0.000164511,0.904534795,0.366414301,pos,ns,0.493232792,Eri3,Eri3_Intron,4,117585817,117585866,117585865,117585866,50,-,CAGAGACAAGTGCTTATGTAATCAACAAACTGTCTTGGTGTCAGAATACG,"Intron (Eri3-201/Eri3, intron 4 of 8)",4,117550365,117674297,123933,1,Eri3-201,35452,Eri3-201;Eri3-205;Eri3-206;Eri3-202;Eri3-204,Eri3;Eri3;Eri3;Eri3;Eri3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,82,97,140546,ENSMUSG00000033423,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11401,cg24785205,0.0000258,0.0000102,2.537143948,0.011666054,gain,ns,0.0000765,0.0000173,4.427392104,0.0000132,pos,ns,0.012502228,0.00506405,2.46881986,0.014094929,pos,ns,1.850937112,-0.000134786,0.000174152,-0.773953003,0.439548409,neg,ns,0.189021335,Zic3,Zic3_Promoter,X,58019020,58019069,58019068,58019069,50,-,ATATATCACACTAGCCTTTGAAAAGCGCCGCACACTATAAGGAAATAGCG,Promoter (3-4kb),20,58022700,58031448,8749,1,Zic3-204,-3680,Zic3-204,Zic3,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,17,22773,ENSMUSG00000067860,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
11023,cg02860346,0.00000975,0.000019,0.512524229,0.608649145,gain,ns,0.000143156,0.0000323,4.428399437,0.0000132,pos,ns,0.037299305,0.00947064,3.938414358,0.000101358,pos,ns,3.994141131,-0.000643794,0.000325695,-1.976679051,0.048963902,neg,ns,0.331481262,Mbip,Mbip_Intergenic_downstream,12,56302137,56302186,56302137,56302138,50,+,CGGCGTGTGCCCTGACTTGATTGTAATTGCCCGAATCTGCTCCCGCTGCT,Distal Intergenic,12,56340511,56345821,5311,2,Mbip-202,43635,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,12,13,217588,ENSMUSG00000021028,conserved gene and region,12,56302089,56302194,106,*,106,9,0.566037736,1.07918552,0.08490566,0.0000015,CpGisland,TRUE,U2,Pr-W
10881,cg14478165,0.000168874,0.0000143,11.80196553,8.46E-27,gain,yes,-0.000107609,0.0000243,-4.426718185,0.0000133,neg,ns,0.046064091,0.007121711,6.468121595,3.86E-10,pos,ns,9.413259921,-0.001633715,0.000244915,-6.670537955,1.17E-10,neg,yes,0.653874865,Ralgapa1,Ralgapa1_Exon,12,55722743,55722792,55722743,55722744,50,+,CGGGATGAACTGTCAATGACAGGAACTGCACCTTTGGCTCGTTCAACAGT,"Exon (Ralgapa1-211/Ralgapa1, exon 17 of 40)",12,55602896,55820767,217872,2,Ralgapa1-211,97975,Ralgapa1-211;Ralgapa1-212;Ralgapa1-201;Ralgapa1-202;Ralgapa1-204;Ralgapa1-207;Ralgapa1-208,Ralgapa1;Ralgapa1;Ralgapa1;Ralgapa1;Ralgapa1;Ralgapa1;Ralgapa1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,15,56784,ENSMUSG00000021027,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25809,cg01668584,0.0000669,0.00000786,8.511716567,7.47E-16,gain,yes,-0.0000591,0.0000134,-4.426108691,0.0000133,neg,ns,-0.001855356,0.003913701,-0.474066926,0.635785907,neg,ns,0.196689103,-0.00000325,0.000134592,-0.024154599,0.980744833,neg,ns,0.198140214,Uncx,Uncx_Intergenic_downstream,5,139550489,139550538,139550537,139550538,50,+,GTTTTTGCTCTATTATGCATCCGACGCCATCATTTTTCTTTCTAATTACG,Distal Intergenic,5,139543898,139545268,1371,1,Uncx-202,6591,Uncx-201,Uncx,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,59,88,22255,ENSMUSG00000029546,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
5481,cg09937229,0.0000253,0.00000311,8.135553613,1.00E-14,gain,yes,-0.0000234,0.00000528,-4.42639928,0.0000133,neg,ns,-0.000119312,0.001546911,-0.077129071,0.938570622,neg,ns,0.027533044,-0.00000997,0.0000532,-0.187493826,0.851396122,neg,ns,0.931147773,Dnajc19,Dnajc19_Exon,3,34065021,34065070,34065021,34065022,50,-,CGCTTCAGGGGTCAGGCAGAAGATAGACAGCCAGGTAACTTGAGTGGACC,"Exon (Fxr1-201/Fxr1, exon 15 of 17)",3,34056020,34081312,25293,2,Dnajc19-201,16242,Dnajc19-201;Fxr1-201;Fxr1-202;Fxr1-207;Fxr1-206;Fxr1-204;Fxr1-208,Dnajc19;Fxr1;Fxr1;Fxr1;Fxr1;Fxr1;Fxr1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,8,67713,ENSMUSG00000027679,mapped to different genes,3,34064997,34065022,26,*,26,6,0.692307692,1.925925926,0.230769231,0.000000406,CpGisland,TRUE,U10,Tr-S
5103,cg16139811,-0.00000713,0.00000966,-0.738079001,0.461024801,loss,ns,0.0000727,0.0000164,4.426113876,0.0000133,pos,ns,0.02524812,0.004810263,5.248802352,0.000000285,pos,ns,6.545772175,-0.000695283,0.000165425,-4.203022686,0.0000345,neg,ns,0.215266792,Dnm1,Dnm1_Exon,2,32318525,32318574,32318573,32318574,50,-,CAGTAGTCTGCACATTGGTTAGGCTGGGCTGGGTTAGACCCTCGGCACCG,"Exon (Mir199b-201/Mir199b-201, exon 1 of 1)",2,32308471,32353263,44793,2,Dnm1-204,34689,Dnm1-204;Dnm1-209;Dnm1-202;Dnm1-201;Dnm1-203;Dnm1-205;Dnm1-214;Dnm1-206;Dnm1-216;Dnm1-217;Dnm1-213,Dnm1;Dnm1;Dnm1;Dnm1;Dnm1;Dnm1;Dnm1;Dnm1;Dnm1;Dnm1;Dnm1,0;0;0;0;0;0;0;0;0;0;-1194,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,16,13429,ENSMUSG00000026825,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
26869,cg21822721,-0.0000913,0.0000184,-4.954427197,0.0000012,loss,yes,0.000138495,0.0000313,4.423770248,0.0000134,pos,ns,0.058494295,0.009171871,6.37757521,6.53E-10,pos,ns,9.185214725,-0.001045661,0.00031542,-3.315140634,0.001024655,neg,ns,0.487527617,Nol4l,Nol4l_Intergenic_upstream,2,153548253,153548302,153548253,153548254,50,-,CGTGGCTGGGACAGAACATCTGTCTGTTGCTATGGTTGCCATACACTTGA,Distal Intergenic,2,153407462,153529971,122510,2,Nol4l-201,-18331,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,14,329540,ENSMUSG00000061411,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5017,cg26717373,0.00000267,0.00000464,0.576371833,0.564782114,gain,ns,-0.0000348,0.00000787,-4.42501497,0.0000134,neg,ns,0.00249023,0.002307089,1.079381863,0.28125662,pos,ns,0.550897246,-0.00010144,0.0000793,-1.278544133,0.202014,neg,ns,0.862560962,Wdr33,Wdr33_Exon,18,31833690,31833739,31833690,31833691,50,-,CGTCAAGATGTTCCAGGCACATAAGGAGGCGATTAGAGAGGCCAGGTTTA,"Exon (Wdr33-202/Wdr33, exon 6 of 8)",18,31804090,31841642,37553,1,Wdr33-202,29600,Wdr33-204;Wdr33-202;Wdr33-207;Wdr33-201;Wdr33-205,Wdr33;Wdr33;Wdr33;Wdr33;Wdr33,29600;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,6,74320,ENSMUSG00000024400,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11400,cg07200166,0.0000355,0.0000119,2.979999945,0.003110478,gain,ns,0.0000894,0.0000202,4.421075911,0.0000136,pos,ns,0.032154743,0.005924406,5.42750535,0.000000115,pos,ns,6.937623373,-0.000574724,0.00020374,-2.820873008,0.005098186,neg,ns,0.29128738,Zic3,Zic3_Promoter,X,58018949,58018998,58018949,58018950,50,+,CGTGATTGACAAGAGCTTAGTTTGGTAAAGGGAAGACACGCAAGCTTTCA,Promoter (3-4kb),20,58022700,58031448,8749,1,Zic3-204,-3702,Zic3-204,Zic3,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,17,22773,ENSMUSG00000067860,conserved gene but different region,X,58018706,58019003,298,*,298,21,0.546979866,0.950197388,0.070469799,3.87E-13,CpGisland,TRUE,U13,Hc-P
10297,cg02810163,0.000147263,0.00000992,14.84244145,5.07E-38,gain,yes,-0.0000744,0.0000169,-4.414293637,0.000014,neg,ns,-0.013346459,0.004938143,-2.702728211,0.007256348,neg,ns,2.139281889,0.000424145,0.000169822,2.497579972,0.013022594,pos,ns,0.748466459,Hibadh,Hibadh_Intron,6,52567516,52567565,52567564,52567565,50,-,AGGCGACAGCTGGGACAGAAAGCTGCTACTCAACGAACAATATAATCCCG,"Intron (Hibadh-201/Hibadh, intron 4 of 7)",6,52546228,52640389,94162,2,Hibadh-201,72824,Hibadh-201;Hibadh-203,Hibadh;Hibadh,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,13,58875,ENSMUSG00000029776,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11635,cg12054225,0.000076,0.00000935,8.125188614,1.07E-14,gain,yes,0.0000701,0.0000159,4.41461833,0.000014,pos,ns,0.024806505,0.004654364,5.32973052,0.00000019,pos,ns,6.721973167,-0.000321161,0.000160063,-2.006464856,0.045674894,neg,ns,0.620096404,Fgf13,Fgf13_fiveUTR,X,59567787,59567836,59567835,59567836,50,-,AAGGGAAATGTTTGAACATGTGATGAGCAACGTGTGAGCCTGTTACACCG,Promoter (<=1kb),20,59250885,59567821,316937,2,Fgf13-208,0,Fgf13-203;Fgf13-205;Fgf13-206;Fgf13-208;Fgf13-209,Fgf13;Fgf13;Fgf13;Fgf13;Fgf13,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,9,14168,ENSMUSG00000031137,mapped to different genes,X,59567671,59567972,302,*,302,20,0.496688742,1.073777778,0.066225166,4.98E-12,CpGisland,TRUE,NA,NRS
2627,cg08170671,0.00000777,0.00000599,1.29840973,0.19511166,gain,ns,-0.0000449,0.0000102,-4.414344767,0.000014,neg,ns,-0.012436645,0.002978857,-4.174972416,0.0000388,neg,ns,4.41153,0.000202521,0.000102443,1.976916979,0.048936858,pos,ns,0.885592841,Camk2g,Camk2g_threeUTR,14,20736640,20736689,20736688,20736689,50,-,TTTTTTTTCTTAAATGTAAAAAACACCTCGGTACAGCAGAGACAGACACG,3' UTR,14,20734875,20794051,59177,2,Camk2g-203,57362,Camk2g-203;Camk2g-201;Camk2g-202;Camk2g-205;Camk2g-217;Camk2g-210;Camk2g-209;Camk2g-204;Camk2g-212;Camk2g-211;Ndst2-202,Camk2g;Camk2g;Camk2g;Camk2g;Camk2g;Camk2g;Camk2g;Camk2g;Camk2g;Camk2g;Ndst2,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,15,12325,ENSMUSG00000021820,conserved gene and region,14,20736668,20736817,150,*,150,10,0.593333333,0.765306122,0.066666667,0.00000279,CpGisland,TRUE,U11,Tr-P
15251,cg21636615,-0.0000149,0.0000125,-1.189666667,0.235087783,loss,ns,0.0000938,0.0000213,4.408642618,0.0000144,pos,ns,0.009930337,0.006236508,1.592291162,0.112338427,pos,ns,0.949471662,-0.000163817,0.000214473,-0.763812577,0.445559877,neg,ns,0.841783545,Gm5197,Gm5197_Intron,13,80000551,80000600,80000599,80000600,50,-,AAGCCCCCAACTGAATTGTTTTTTTCCTTCATAGTCTAAAAAGCACAGCG,"Intron (Gm28526-201/Gm28526-201, intron 1 of 2)",13,80098222,80099418,1197,2,Gm5197-201,98867,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,4,382780,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18373,cg13505793,-0.000015,0.0000138,-1.090219331,0.27646324,loss,ns,0.000102984,0.0000234,4.407347325,0.0000144,pos,ns,0.009285072,0.006845574,1.356361435,0.175971216,pos,ns,0.754558366,-0.000115104,0.000235419,-0.48893207,0.625235516,neg,ns,0.34886963,Otp,Otp_Intron,13,94880284,94880333,94880332,94880333,50,+,CACTATTAAACTGTAATGAATTCGGCCCAGAGTTCACGGCTGGCTGATCG,"Intron (Otp-201/Otp, intron 2 of 2)",13,94875602,94885130,9529,1,Otp-201,4682,Otp-201;Otp-202,Otp;Otp,0;-2267,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,34,18420,ENSMUSG00000021685,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
10760,cg17352520,0.0000213,0.00000748,2.850167334,0.0046624,gain,ns,0.000056,0.0000127,4.405461683,0.0000146,pos,ns,0.018876303,0.00372226,5.071194518,0.000000682,pos,ns,6.166433143,-0.000375255,0.000128008,-2.931494979,0.003624286,neg,ns,0.418594211,Ube2q2,Ube2q2_Exon,9,55149649,55149698,55149697,55149698,50,+,GCTCAAGGCCGAGCTGAAGTTCCTGGCGTCCATCTTCGACAAGAACCACG,Promoter (<=1kb),9,55148854,55207529,58676,1,Ube2q2-201,795,Ube2q2-201;Ube2q2-202;Ube2q2-203,Ube2q2;Ube2q2;Ube2q2,0;0;-385,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,109161,ENSMUSG00000032307,conserved gene and region,9,55148829,55150136,1308,*,1308,171,0.737767584,0.963878475,0.130733945,1.52E-151,CpGisland,TRUE,U2,Pr-W
8777,cg06360155,-0.0000268,0.0000116,-2.298004694,0.02222705,loss,ns,0.0000871,0.0000198,4.404411198,0.0000146,pos,ns,0.012506304,0.005794802,2.158193302,0.031680351,pos,ns,1.499210019,-0.000205964,0.000199283,-1.033526305,0.302163264,neg,ns,0.326494292,Fgf8,Fgf8_Intron,19,45740448,45740497,45740448,45740449,50,+,CGATCCCCCAAACTGGCTCAAGAAGAGGAGAAAGTATTCAGGAAATGTTA,"Intron (Fgf8-201/Fgf8, intron 4 of 5)",19,45736798,45742874,6077,2,Fgf8-201,2377,Fgf8-201;Fgf8-206;Fgf8-202;Fgf8-205;Fgf8-203;Fgf8-204,Fgf8;Fgf8;Fgf8;Fgf8;Fgf8;Fgf8,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,18,14179,ENSMUSG00000025219,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
21936,cg12483863,0.00000754,0.00000544,1.386146147,0.166698485,gain,ns,-0.0000407,0.00000924,-4.404670622,0.0000146,neg,ns,-0.011027548,0.002707811,-4.072495557,0.0000591,neg,ns,4.228315168,0.000449044,0.0000931,4.822131573,0.00000223,pos,ns,0.884159133,Faf1,Faf1_Intron,4,109763217,109763266,109763217,109763218,50,-,CGTTATTTTTGGGGAGGGTGGATGTATGAAAAGCCAATTGGAGTTTTTTT,"Intron (Faf1-201/Faf1, intron 7 of 18)",4,109676588,109963960,287373,1,Faf1-201,86629,Faf1-201,Faf1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,24,14084,ENSMUSG00000010517,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18125,cg02019798,0.0000849,0.0000106,8.003848534,2.44E-14,gain,yes,-0.0000794,0.000018,-4.40354954,0.0000147,neg,ns,0.024292691,0.005282194,4.59897721,0.00000619,pos,ns,5.20807434,-0.000769686,0.000181654,-4.237093447,0.0000299,neg,ns,0.703881942,Spag9,Spag9_fiveUTR,11,94044361,94044410,94044361,94044362,50,-,CGCCATGAGTCCTGGATGCATGCTGCTGTTTGTGTTTGGCTTTGTTGGCG,Promoter (<=1kb),11,94044365,94126083,81719,1,Spag9-201,0,Spag9-209;Spag9-208;Spag9-202;Spag9-212;Spag9-207;Spag9-206;Spag9-203;Spag9-204;Spag9-205;Spag9-201,Spag9;Spag9;Spag9;Spag9;Spag9;Spag9;Spag9;Spag9;Spag9;Spag9,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,6,70834,ENSMUSG00000020859,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
19491,cg18929422,-0.0000178,0.0000112,-1.592952249,0.112189991,loss,ns,0.0000835,0.000019,4.403763955,0.0000147,pos,ns,-0.0000519,0.005557231,-0.009347524,0.992547876,neg,ns,0.003248536,0.000199824,0.000191113,1.045582571,0.296568394,pos,ns,0.705306929,Pja1,Pja1_Intergenic_downstream,X,99443802,99443851,99443850,99443851,50,-,TCATTTCCTGTGGCCTAAAGTACTTATTTGCAAGTTGTAAGGACTGCCCG,Distal Intergenic,20,99466146,99470672,4527,2,Pja1-204,26870,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,17,18744,ENSMUSG00000034403,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18407,cg15393941,0.0000744,0.0000124,6.015337048,5.05E-09,gain,yes,-0.0000924,0.000021,-4.398075302,0.000015,neg,ns,-0.010815313,0.006156394,-1.756760955,0.079945821,neg,ns,1.097204233,0.000105452,0.000211718,0.498079794,0.618780963,pos,ns,0.44556929,Jun,Jun_Exon,4,95197453,95197502,95197501,95197502,50,+,TGTTCCCCAAAGTTGCTAAAAATGCCTGCGGGTTTGCACACAAGCAGACG,"Exon (Gm12708-201/Gm12708-201, exon 3 of 4)",4,95049034,95052222,3189,2,Jun-201,-145231,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,2,16476,ENSMUSG00000052684,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14744,cg01252899,0.000025,0.00000867,2.886036705,0.004175072,gain,ns,0.0000648,0.0000147,4.398110361,0.000015,pos,ns,0.019968392,0.004313416,4.62936841,0.0000054,pos,ns,5.267518244,-0.000475836,0.000148338,-3.207781401,0.00147747,neg,ns,0.179746846,Tbl1x,Tbl1x_Promoter,X,77509313,77509362,77509361,77509362,50,-,CGAAAGGAGAATCAATCAACCACAATGTGACCCTACAGGCGGAAAAAACG,Promoter (1-2kb),20,77511013,77662983,151971,1,Tbl1x-201,-1700,Tbl1x-201;Tbl1x-202,Tbl1x;Tbl1x,-1651;-1852,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,2,21372,ENSMUSG00000025246,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14350,cg14443857,-0.0000783,0.00000744,-10.52251993,2.42E-22,loss,yes,-0.0000556,0.0000126,-4.394994269,0.0000152,neg,ns,0.008601454,0.003704081,2.322155748,0.020872093,pos,ns,1.680433997,-0.000959336,0.000127383,-7.531111279,5.54E-13,neg,yes,0.771689748,Specc1l,Specc1l_Exon,10,75246641,75246690,75246689,75246690,50,+,GCTAGTAGCTTGCAGGAAGATCTGGCTCATACCCGAAATGATGCCAATCG,"Exon (Specc1l-204/Specc1l, exon 4 of 16)",10,75212073,75311063,98991,1,Specc1l-204,34568,Specc1l-204;Specc1l-205;Specc1l-202;Specc1l-206;Specc1l-201,Specc1l;Specc1l;Specc1l;Specc1l;Specc1l,0;34546;0;34221;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,74392,ENSMUSG00000033444,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4696,cg24324866,0.0000597,0.00000725,8.226929911,5.36E-15,gain,yes,-0.0000541,0.0000123,-4.394855146,0.0000152,neg,ns,0.01280583,0.003609645,3.547669905,0.000448764,pos,ns,3.347981598,-0.00029233,0.000124135,-2.354928518,0.019149379,neg,ns,0.787786284,Tbc1d13,Tbc1d13_threeUTR,2,30136648,30136697,30136696,30136697,50,+,TGACCTTTGCCTGCTGTGTCCACAGGCATCCCCTGTGAGGGCGGACTGCG,3' UTR,2,30133746,30137296,3551,1,Tbc1d13-207,2902,Tbc1d13-207;Tbc1d13-201;Tbc1d13-208;Tbc1d13-202;Tbc1d13-204;Tbc1d13-206;Tbc1d13-203,Tbc1d13;Tbc1d13;Tbc1d13;Tbc1d13;Tbc1d13;Tbc1d13;Tbc1d13,0;0;2876;0;0;0;-333,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,1,70296,ENSMUSG00000039678,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27480,cg07369538,0.0000786,0.00000463,16.9574139,4.32E-46,gain,yes,-0.0000346,0.00000787,-4.391899851,0.0000154,neg,ns,-0.009790245,0.002306708,-4.244250432,0.000029,neg,ns,4.537456958,0.000377414,0.0000793,4.757671854,0.00000301,pos,ns,0.798446812,Pbx1,Pbx1_Intron,1,168342111,168342160,168342111,168342112,50,-,CGCGAGATGAAATAAACATGAGGACTGTCAGCAGTGACAGCCTAAGCAAA,"Intron (Pbx1-208/Pbx1, intron 2 of 7)",1,168119364,168432270,312907,2,Pbx1-208,90110,Pbx1-208;Pbx1-205;Pbx1-206;Pbx1-201;Pbx1-202;Pbx1-204,Pbx1;Pbx1;Pbx1;Pbx1;Pbx1;Pbx1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,84,18514,ENSMUSG00000052534,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19642,cg01325609,-0.00000547,0.00000742,-0.737309414,0.461491891,loss,ns,0.0000553,0.0000126,4.389235229,0.0000156,pos,ns,0.002425735,0.003692837,0.656875595,0.511748259,pos,ns,0.290943626,0.000182073,0.000126996,1.433683211,0.152670522,pos,ns,0.912039093,Gm28267,Gm28267_Intergenic_upstream,9,100252491,100252540,100252539,100252540,50,-,CTTTTAATGGCATTATAATTTTTTTCCCTGTGCGCTCCATAACTGCGTCG,Distal Intergenic,9,100404495,100404759,265,1,Gm28267-201,-152004,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,29,29,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12873,cg19155816,-0.000162506,0.000014,-11.64471521,3.06E-26,loss,yes,0.000103984,0.0000237,4.386006379,0.0000158,pos,ns,0.014010875,0.006945706,2.017199474,0.04453633,pos,ns,1.351285574,-0.000454814,0.000238862,-1.904084059,0.05782492,neg,ns,0.409506014,Gm47010,Gm47010_Intergenic_upstream,14,67613273,67613322,67613321,67613322,50,-,CACAATCAACTGCTATTTTCATTGTTCTTTGGCAAATTTATACACAGTCG,Distal Intergenic,14,67588363,67588792,430,2,Gm47010-201,-24530,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,8,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
15236,cg14245610,-0.0000225,0.0000115,-1.951589897,0.05188722,loss,ns,-0.0000858,0.0000196,-4.385662421,0.0000159,neg,ns,0.022274815,0.00573233,3.885822418,0.000124734,pos,ns,3.904014975,-0.000429483,0.000197134,-2.178628963,0.030112246,neg,ns,0.719588946,Plppr3,Plppr3_Exon,10,79861747,79861796,79861747,79861748,50,+,CGGAATTTCTTTGCCAACTGACTGCACGGTACTTCTGCTTCCTGTTGTTG,"Exon (Ptbp1-204/Ptbp1, exon 1 of 4)",10,79860475,79874570,14096,2,Plppr3-207,12774,Plppr3-207;Plppr3-202;Plppr3-206;Plppr3-201;Plppr3-210;Plppr3-209;Plppr3-204;Ptbp1-216;Ptbp1-210;Ptbp1-206;Ptbp1-205;Ptbp1-203;Ptbp1-201;Ptbp1-215;Ptbp1-208;Ptbp1-212;Ptbp1-202;Ptbp1-209;Ptbp1-211;Ptbp1-214;Ptbp1-207;Ptbp1-204;Ptbp1-213,Plppr3;Plppr3;Plppr3;Plppr3;Plppr3;Plppr3;Plppr3;Ptbp1;Ptbp1;Ptbp1;Ptbp1;Ptbp1;Ptbp1;Ptbp1;Ptbp1;Ptbp1;Ptbp1;Ptbp1;Ptbp1;Ptbp1;Ptbp1;Ptbp1;Ptbp1,0;12570;12774;12838;5485;12428;12612;0;7142;0;0;7106;0;7082;7080;7080;0;6709;2975;2753;0;0;-221,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,216152,ENSMUSG00000035835,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17820,cg12777332,-0.00000786,0.00000582,-1.349563922,0.178140624,loss,ns,0.0000434,0.00000989,4.383435738,0.000016,pos,ns,-0.000396187,0.002898029,-0.136709159,0.89134943,neg,ns,0.049952009,0.0000945,0.0000997,0.948026898,0.343854189,pos,ns,0.842306214,Irx3,Irx3_Intergenic_upstream,8,91864228,91864277,91864228,91864229,50,-,CGGCTTTGATTTGTTGAGCTCCCTGAATGAGTTTATCCAAACAATGTGAA,Distal Intergenic,8,91798525,91802067,3543,2,Irx3-202,-62210,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,15,36,16373,ENSMUSG00000031734,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17498,cg04314650,0.0000078,0.00000954,0.817559619,0.414236602,gain,ns,0.0000711,0.0000162,4.383938836,0.000016,pos,ns,0.018861618,0.004750145,3.970746193,0.0000891,pos,ns,4.050031505,-0.000200242,0.000163357,-1.225795514,0.221206029,neg,ns,0.830710529,Chtop,Chtop_fiveUTR,3,90507541,90507590,90507589,90507590,50,+,TCACCGCTCATTTAGAGACATCTTGGTGGTGCTTTTTAGCACAACTTTCG,5' UTR,3,90498956,90509450,10495,2,Chtop-205,1860,Chtop-205;Chtop-201;Chtop-206;Chtop-203;Chtop-202;Chtop-207;Chtop-204;Chtop-209;Chtop-208;S100a1-201;S100a1-202,Chtop;Chtop;Chtop;Chtop;Chtop;Chtop;Chtop;Chtop;Chtop;S100a1;S100a1,0;0;0;0;0;0;0;0;0;6802;6688,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,10,66511,ENSMUSG00000001017,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15145,cg14433164,0.0000434,0.0000047,9.234082648,4.24E-18,gain,yes,-0.000035,0.00000798,-4.379043272,0.0000163,neg,ns,-0.003082272,0.00233829,-1.318173474,0.188418739,neg,ns,0.724875907,0.000178119,0.0000804,2.215033819,0.027484454,pos,ns,0.866374902,Fanci,Fanci_threeUTR,7,79449980,79450029,79449980,79449981,50,+,CGTTTTTCCAAGGAGCCTTTGGTGAGTTCAATTATCTGGTAAATATCCAG,3' UTR,7,79392312,79450264,57953,1,Fanci-201,57668,Fanci-201;Fanci-204;Fanci-207;Polg-201;Polg-217;Polg-206;Polg-214;Polg-203;Polg-213;Polg-205;Polg-212;Polg-218;Polg-215;Polg-209;Polg-207;Polg-204,Fanci;Fanci;Fanci;Polg;Polg;Polg;Polg;Polg;Polg;Polg;Polg;Polg;Polg;Polg;Polg;Polg,0;0;9312;0;0;0;0;0;0;0;2051;1893;3757;4311;6036;5365,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,1,208836,ENSMUSG00000039187,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2562,cg25479924,-0.00000661,0.0000162,-0.408197148,0.683410739,loss,ns,-0.000120481,0.0000275,-4.379466316,0.0000163,neg,ns,-0.015468025,0.008059639,-1.919195855,0.055877422,neg,ns,1.252763636,0.000444311,0.00027717,1.603025905,0.109947301,pos,ns,0.609868187,Pde7b,Pde7b_Intron,10,20534042,20534091,20534042,20534043,50,+,CGTCAAAAGAATTAGGCTAGAAATCTTATGATTACAGCTTTTCTTGTGAT,"Intron (Pde7b-201/Pde7b, intron 2 of 12)",10,20398004,20725078,327075,2,Pde7b-201,190987,Pde7b-201;Pde7b-204;Pde7b-205;Pde7b-206;Pde7b-202;Pde7b-207,Pde7b;Pde7b;Pde7b;Pde7b;Pde7b;Pde7b,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,4,29863,ENSMUSG00000019990,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19641,cg16187601,-0.00000604,0.0000047,-1.285782187,0.199478699,loss,ns,0.000035,0.00000799,4.376928851,0.0000165,pos,ns,0.000307165,0.002339535,0.131293268,0.895628482,pos,ns,0.047872104,0.000151735,0.0000805,1.88592926,0.060239218,pos,ns,0.956099139,Gm28267,Gm28267_Intergenic_upstream,9,100252488,100252537,100252536,100252537,50,-,TAACTTTTAATGGCATTATAATTTTTTTCCCTGTGCGCTCCATAACTGCG,Distal Intergenic,9,100404495,100404759,265,1,Gm28267-201,-152007,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,29,29,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26486,cg04952455,-0.00000957,0.00000687,-1.392068844,0.164899409,loss,ns,0.0000511,0.0000117,4.375488205,0.0000166,pos,ns,0.002557127,0.003421355,0.747401869,0.455387557,pos,ns,0.341618841,-0.000130196,0.00011766,-1.106545574,0.269348384,neg,ns,0.886463033,Casz1,Casz1_Intergenic_upstream,4,148778267,148778316,148778267,148778268,50,+,CGGAGAATCATTAGCAGAAATCATTAGCTAGAATACAGCCTCCCCCATAA,Distal Intergenic,4,148804429,148945129,140701,1,Casz1-201,-26113,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,14,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25241,cg08277008,0.000229041,0.0000142,16.12430799,6.70E-43,gain,yes,-0.000105533,0.0000241,-4.373204543,0.0000167,neg,ns,-0.009490731,0.007069812,-1.342430602,0.180438648,neg,ns,0.743670436,0.000238127,0.00024313,0.97942241,0.328135029,pos,ns,0.581165934,Etv6,Etv6_Intron,6,134144362,134144411,134144362,134144363,50,+,CGATGCAGGCAGACGTTAATTCCTAGCTCCATGCTTCCTGATAAGGAAGC,"Intron (Etv6-201/Etv6, intron 2 of 7)",6,134035700,134270155,234456,1,Etv6-201,108662,Etv6-201;Etv6-202;Etv6-204,Etv6;Etv6;Etv6,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,7,14011,ENSMUSG00000030199,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
4234,cg17226346,0.0000258,0.00000492,5.247668511,0.000000286,gain,yes,-0.0000366,0.00000836,-4.373630706,0.0000167,neg,ns,0.006429327,0.002449661,2.624578435,0.009105404,pos,ns,2.040700774,-0.000275535,0.0000842,-3.270691502,0.001193688,neg,ns,0.902173137,Ilrun,Ilrun_Exon,17,27786227,27786276,27786227,27786228,50,+,CGACATATTTAAGACAAACCCCTGGAGGCCAGGCCTCTGCCCCTGAGTTC,"Exon (Ilrun-203/Ilrun, exon 3 of 5)",17,27751235,27820625,69391,2,Ilrun-203,34349,Ilrun-203;Ilrun-202;Ilrun-205;Ilrun-206;Ilrun-207;Ilrun-201;Ilrun-204;Rps2-ps9-202;Rps2-ps9-201,Ilrun;Ilrun;Ilrun;Ilrun;Ilrun;Ilrun;Ilrun;Rps2-ps9;Rps2-ps9,0;0;0;0;0;0;0;1848;1803,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,224647,ENSMUSG00000056692,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17849,cg21408215,0.000014,0.00000307,4.58054243,0.00000673,gain,ns,-0.0000228,0.00000521,-4.37182602,0.0000168,neg,ns,0.001237805,0.001526604,0.810822631,0.418089581,pos,ns,0.378730655,-0.0000767,0.0000525,-1.460349754,0.145206682,neg,ns,0.924207715,Gm49711,Gm49711_Exon,16,92078065,92078114,92078113,92078114,50,+,ATGCTGGTGTGTGGAAGCAGAGCTGGTTGCTCCAATATTGCTTACCCACG,"Exon (Slc5a3-201/Slc5a3, exon 2 of 2)",16,92058316,92187341,129026,1,Gm49711-201,19749,Gm49711-201;Mrps6-201;Mrps6-203;Slc5a3-201;Slc5a3-202,Gm49711;Mrps6;Mrps6;Slc5a3;Slc5a3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6095,cg11217865,0.00000781,0.0000161,0.486057636,0.6272697,gain,ns,0.000119312,0.0000273,4.369245249,0.000017,pos,ns,0.008635672,0.008000094,1.079446279,0.281227963,pos,ns,0.550941499,-0.000196033,0.000275123,-0.712530796,0.476672095,neg,ns,0.695973617,Nrg2,Nrg2_threeUTR,18,36017689,36017738,36017737,36017738,50,+,AAATCAGGATGTTACATATAAATAGTTTCCCTATAAAAACGCCTTTGCCG,3' UTR,18,36017652,36197380,179729,2,Nrg2-203,179642,Nrg2-203;Nrg2-206;Nrg2-202;Nrg2-205;Psd2-201;Psd2-205;Psd2-206;Psd2-204;Psd2-203,Nrg2;Nrg2;Nrg2;Nrg2;Psd2;Psd2;Psd2;Psd2;Psd2,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,20,100042150,ENSMUSG00000060275,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
18131,cg16652705,0.0000153,0.0000113,1.354740873,0.176486608,gain,ns,0.0000836,0.0000191,4.367812961,0.0000171,pos,ns,0.019494446,0.005610173,3.474838538,0.000584013,pos,ns,3.233577422,-0.000439192,0.000192933,-2.276391779,0.023504152,neg,ns,0.545646177,Zfx,Zfx_fiveUTR,X,94123096,94123145,94123144,94123145,50,-,TGGCGGGTGCTGCAGGCCGGCCTTTCTCTGGAGCACTGGGCCGGGCTCCG,Promoter (<=1kb),20,94098174,94123109,24936,2,Zfx-202,0,Zfx-201;Zfx-203;Zfx-204;Zfx-207;Zfx-202;Zfx-206;Zfx-205,Zfx;Zfx;Zfx;Zfx;Zfx;Zfx;Zfx,0;-196;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,1,22764,ENSMUSG00000079509,mapped to different genes,X,94122186,94123757,1572,*,1572,190,0.730279898,0.914930572,0.12086514,8.99E-161,CpGisland,TRUE,U1,Pr-A
275,cg02859575,0.0000197,0.0000132,1.488759241,0.137567355,gain,ns,0.0000981,0.0000225,4.363364525,0.0000175,pos,ns,0.014954546,0.006586868,2.270357478,0.023871954,pos,ns,1.622112035,-0.000161784,0.000226522,-0.714207111,0.475636537,neg,ns,0.821857021,Npas4,Npas4_threeUTR,19,4985010,4985059,4985010,4985011,50,+,CGGCTCCACGTCTTGATGACAATATGCCATACTTGACGACGTTAAGTCAC,3' UTR,19,4984355,4989971,5617,2,Npas4-202,4912,Npas4-202;Npas4-201;Npas4-203,Npas4;Npas4;Npas4,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,14,16,225872,ENSMUSG00000045903,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
8456,cg22976699,0.00000879,0.0000108,0.810123191,0.418490813,gain,ns,-0.0000803,0.0000184,-4.358319388,0.0000178,neg,ns,0.00281707,0.005399193,0.521757542,0.602211733,pos,ns,0.220250788,-0.000363786,0.000185678,-1.959231764,0.050981659,neg,ns,0.767168091,Zeb2,Zeb2_Intergenic_upstream,2,45170401,45170450,45170449,45170450,50,+,ATTAGTGTACCTTGCCAGTTATTAACATCCCCGGGTGCTCAGCAAGCACG,Distal Intergenic,2,45116441,45117395,955,2,Zeb2-230,-53006,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,9,158,24136,ENSMUSG00000026872,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11461,cg20980840,0.0000278,0.0000165,1.684361874,0.093118251,gain,ns,-0.00012215,0.000028,-4.357147737,0.0000179,neg,ns,0.055963047,0.008213101,6.813875362,4.95E-11,pos,yes,10.30508227,-0.00188689,0.000282448,-6.680487907,1.10E-10,neg,yes,0.765382368,Hnrnpk,Hnrnpk_fiveUTR,13,58397769,58397818,58397817,58397818,50,+,TGTCTGGGACTGAAACACTGGCATTGTACTGCATTGGTCATTGGCGTTCG,5' UTR,13,58391142,58403343,12202,2,Hnrnpk-202,5525,Hnrnpk-202;Hnrnpk-224;Hnrnpk-221;Hnrnpk-232;Hnrnpk-216;Hnrnpk-201;Hnrnpk-205;Hnrnpk-217;Hnrnpk-206;Hnrnpk-209;Hnrnpk-213;Hnrnpk-227;Hnrnpk-234;Hnrnpk-233;Hnrnpk-228;Hnrnpk-214;Hnrnpk-215;Hnrnpk-211;Hnrnpk-208;Hnrnpk-212;Hnrnpk-231;Hnrnpk-230;Hnrnpk-203;Hnrnpk-218;Hnrnpk-226;Hnrnpk-207;Hnrnpk-219;Hnrnpk-225;Hnrnpk-229;Hnrnpk-223;Hnrnpk-220;Hnrnpk-210;Hnrnpk-204;Hnrnpk-222;Rmi1-205;Rmi1-201;Rmi1-204,Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Rmi1;Rmi1;Rmi1,0;0;0;0;0;0;0;-3901;-2984;-3794;-2571;-3685;-3880;-3599;-3073;0;-2049;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;4684;4237;-4430;-4445;-4882,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,10,19,15387,ENSMUSG00000021546,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6285,cg18957179,0.0000889,0.00002,4.453108891,0.0000118,gain,ns,-0.000147726,0.0000339,-4.355994329,0.000018,neg,ns,0.028582029,0.009935429,2.876778453,0.0042962,pos,ns,2.366915506,0.001289022,0.000341679,3.772615457,0.000193494,pos,ns,0.38175567,Nrn1,Nrn1_fiveUTR,13,36730148,36730197,36730148,36730149,50,+,CGGGTAGTTGGCCATGCTGTCGCCCAGCTTGAGCAAACAGTCCGAAAAGC,Promoter (<=1kb),13,36725361,36730680,5320,2,Nrn1-204,483,Fars2-211;Nrn1-204;Nrn1-201;Nrn1-203;Nrn1-202;Nrn1-205,Fars2;Nrn1;Nrn1;Nrn1;Nrn1;Nrn1,8222;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,8,9,68404,ENSMUSG00000039114,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25892,cg10921475,0.00000117,0.0000189,0.06196363,0.950631727,gain,ns,0.000140107,0.0000322,4.35476728,0.0000181,pos,ns,0.02804233,0.009425693,2.975094693,0.003159227,pos,ns,2.500419219,-0.000742476,0.000324149,-2.290540099,0.022661105,neg,ns,0.832811236,Frmpd3,Frmpd3_Exon,X,140433292,140433341,140433340,140433341,50,+,GTGCTGAGCAGCCTCATTGAGACCTTCGTGCGGCTGGTGTTCATTGTGCG,"Exon (Frmpd3-203/Frmpd3, exon 15 of 15)",20,140342263,140435467,93205,1,Frmpd3-203,91029,Frmpd3-203,Frmpd3,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,10,245643,ENSMUSG00000042425,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21968,cg24720513,0.000140524,0.0000104,13.51380592,4.90E-33,gain,yes,-0.0000769,0.0000177,-4.35170705,0.0000184,neg,ns,0.012546017,0.005175471,2.424130501,0.015916833,pos,ns,1.798143337,-0.000284321,0.000177984,-1.597453718,0.111183393,neg,ns,0.812198547,Ap1g1,Ap1g1_Exon,8,109855584,109855633,109855632,109855633,50,-,ATCACAGCATACAGTAAGAATGGCTTGAAGATAGAATTCACCTTTGAACG,"Exon (Ap1g1-202/Ap1g1, exon 22 of 24)",8,109778554,109864204,85651,1,Ap1g1-202,77030,Ap1g1-202;Ap1g1-201;Ap1g1-205,Ap1g1;Ap1g1;Ap1g1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,11,16,11765,ENSMUSG00000031731,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27667,cg19163499,-0.0000404,0.0000121,-3.35078562,0.000905486,loss,ns,-0.000089,0.0000205,-4.349427748,0.0000185,neg,ns,0.013496722,0.005998091,2.250169777,0.025139135,pos,ns,1.599649665,-0.0000838,0.000206274,-0.406217317,0.6848632,neg,ns,0.745957689,Sdccag8,Sdccag8_Intron,1,176946454,176946503,176946502,176946503,50,-,TCTGTTGCACCATCTGGATTATGAGTTTATTTACCTGTGTTCAAGAAACG,"Intron (Sdccag8-204/Sdccag8, intron 15 of 16)",1,176814660,176956360,141701,1,Sdccag8-204,131794,Sdccag8-204;Sdccag8-201;Sdccag8-203,Sdccag8;Sdccag8;Sdccag8,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,20,76816,ENSMUSG00000026504,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21314,cg22351690,0.0000944,0.0000141,6.690550123,1.04E-10,gain,yes,-0.000104229,0.000024,-4.348705227,0.0000186,neg,ns,0.012683887,0.007021761,1.806368322,0.071830511,pos,ns,1.143691042,-0.000169273,0.000241478,-0.700989316,0.483835519,neg,ns,0.738966726,Nfat5,Nfat5_Intron,8,107332093,107332142,107332141,107332142,50,-,TTAATACACTTAACTTGCATTCTAGCTTCGCCATTCAGAGACAGGCATCG,"Intron (Nfat5-213/Nfat5, intron 2 of 14)",8,107293470,107372227,78758,1,Nfat5-213,38623,Nfat5-212;Nfat5-213;Nfat5-214;Nfat5-206;Nfat5-210;Nfat5-211;Nfat5-203;Nfat5-201,Nfat5;Nfat5;Nfat5;Nfat5;Nfat5;Nfat5;Nfat5;Nfat5,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,17,54446,ENSMUSG00000003847,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15533,cg25356922,0.00000362,0.00000335,1.080415933,0.280796823,gain,ns,-0.0000247,0.00000569,-4.34771742,0.0000187,neg,ns,-0.003967206,0.001667693,-2.378858291,0.017971642,neg,ns,1.745412241,-0.0000285,0.0000574,-0.497628145,0.619098956,neg,ns,0.835561288,Ep300,Ep300_Exon,15,81633936,81633985,81633936,81633937,50,-,CGTTGCTTGGCTTGGGCTGTGTTGTGTGAACGGAACAGTTCACCCCAGTA,Promoter (<=1kb),15,81633979,81640529,6551,1,Ep300-207,0,Ep300-201;Ep300-207;Ep300-204,Ep300;Ep300;Ep300,0;0;-2163,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,7,328572,ENSMUSG00000055024,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17221,cg05694277,0.00000904,0.00000886,1.020338887,0.308363376,gain,ns,0.0000655,0.0000151,4.347367649,0.0000187,pos,ns,0.016201717,0.004411237,3.672828792,0.000282468,pos,ns,3.549030141,-0.000336946,0.000151702,-2.221103865,0.027066213,neg,ns,0.796421638,Nrxn3,Nrxn3_Exon,12,89260409,89260458,89260457,89260458,50,+,CAAGCAGTGTGACAGCTACCCCTGCAAGAATAATGCTGTGTGCAAGGACG,"Exon (Nrxn3-209/Nrxn3, exon 8 of 8)",12,88722876,89261571,538696,1,Nrxn3-209,537533,Nrxn3-209;Nrxn3-213;Nrxn3-208;Nrxn3-205;Nrxn3-201;Nrxn3-210,Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,39,18191,ENSMUSG00000066392,conserved gene and region,12,89260161,89260564,404,*,404,30,0.606435644,0.810702341,0.074257426,3.49E-19,CpGisland,TRUE,U15,NS
26085,cg07239853,-0.00000771,0.00000429,-1.797785319,0.073184003,loss,ns,0.0000317,0.00000729,4.345322081,0.0000189,pos,ns,0.004364825,0.002134469,2.044923051,0.041706625,pos,ns,1.379794955,-0.000203376,0.0000734,-2.770631112,0.005932481,neg,ns,0.903403958,Gm2505,Gm2505_Intron,3,143790415,143790464,143790463,143790464,50,-,TAGTAAATGGCCTCAAAGCAATAATTACCAGTGTAGGTGTGTCAGAAGCG,"Intron (Gm42705-201/Gm42705-201, intron 1 of 5)",3,143872995,143873819,825,1,Gm2505-201,-82580,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,37,100039938,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
170,cg04613586,0.000122664,0.0000119,10.2874519,1.51E-21,gain,yes,-0.000088,0.0000203,-4.341903737,0.0000192,neg,ns,0.034935097,0.005934539,5.886741484,1.02E-08,pos,ns,7.990243357,-0.000798162,0.000204088,-3.910866594,0.000113029,neg,ns,0.652894361,Mtmr3,Mtmr3_Exon,11,4485929,4485978,4485977,4485978,50,+,CTGTGCTGCAGCGAGACAAACAGTTCTGATCCAGATTGCTTTCCGAGTCG,"Exon (Mtmr3-207/Mtmr3, exon 1 of 3)",11,4480868,4594815,113948,2,Mtmr3-202,108837,Mtmr3-202;Mtmr3-207;Mtmr3-201;Mtmr3-203;Mtmr3-205;Mtmr3-204,Mtmr3;Mtmr3;Mtmr3;Mtmr3;Mtmr3;Mtmr3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,4,74302,ENSMUSG00000034354,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5829,cg20650267,-0.0000112,0.00000493,-2.264934471,0.024206766,loss,ns,-0.0000363,0.00000837,-4.341509805,0.0000192,neg,ns,-0.000472144,0.002452863,-0.192487126,0.847486687,neg,ns,0.071867115,-0.000253618,0.0000844,-3.006597942,0.002857937,neg,ns,0.863820438,Mylk,Mylk_Exon,16,34914967,34915016,34914967,34914968,50,-,CGTGTTCACCCTGGTTCTAAAGAAGGTGCAGCCCTGGCATGCCGGCCAGT,"Exon (Mylk-201/Mylk, exon 14 of 32)",16,34784921,35002420,217500,1,Mylk-201,130046,Mylk-201;Mylk-207;Mylk-208,Mylk;Mylk;Mylk,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,7,107589,ENSMUSG00000022836,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
808,cg21843014,0.0000799,0.0000153,5.214697505,0.000000337,gain,yes,-0.000112729,0.000026,-4.330935485,0.0000201,neg,ns,-0.016057648,0.007625563,-2.10576553,0.03602868,neg,ns,1.44335165,0.000416256,0.000262242,1.587293105,0.113465695,pos,ns,0.762387235,Hnrnpul2,Hnrnpul2_Exon,19,8822890,8822939,8822938,8822939,50,+,GAACATGGCCGAGCTTACTATGAATTCCGAGAGGAGGCTTACCACAGCCG,"Exon (Hnrnpul2-201/Hnrnpul2, exon 2 of 14)",19,8820010,8834143,14134,1,Hnrnpul2-201,2880,Hnrnpul2-201;Hnrnpul2-202;Ttc9c-202;Ttc9c-204;Ttc9c-201;Ttc9c-203,Hnrnpul2;Hnrnpul2;Ttc9c;Ttc9c;Ttc9c;Ttc9c,0;0;-3557;-3966;-3596;-3658,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,68693,ENSMUSG00000071659,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U4,Pr-F
13973,cg22385855,0.00007,0.0000244,2.864703219,0.004458993,gain,ns,0.000179641,0.0000415,4.330163918,0.0000201,pos,ns,0.039299469,0.012153954,3.23347203,0.001354772,pos,ns,2.868133838,-0.00113015,0.000417973,-2.703878788,0.007231859,neg,ns,0.431990778,Hcfc1,Hcfc1_Promoter,X,73966364,73966413,73966364,73966365,50,-,CGTAGCCCTCCCCCGCCGGAAATGGCGGAGCCCCGGCCCGGTTCCCACAC,Promoter (<=1kb),20,73942792,73966357,23566,2,Hcfc1-201,-56,Hcfc1-201;Hcfc1-202,Hcfc1;Hcfc1,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,4,15161,ENSMUSG00000031386,conserved gene but different region,X,73966237,73966739,503,*,503,37,0.624254473,0.771600332,0.073558648,2.30E-23,CpGisland,TRUE,U1,Pr-A
2915,cg18295902,0.0000501,0.00000519,9.661894341,1.78E-19,gain,yes,-0.0000382,0.00000882,-4.327907659,0.0000203,neg,ns,-0.008724101,0.002582642,-3.377975299,0.000823404,neg,ns,3.084386798,0.000315454,0.0000888,3.551733272,0.00044216,pos,ns,0.910171912,Ehbp1,Ehbp1_Intron,11,22053339,22053388,22053387,22053388,50,-,TCAGGCTTCAAAGATTCACACTTCCAAAACTCTATAAGAGTTTGTGAACG,"Intron (Ehbp1-201/Ehbp1, intron 20 of 23)",11,22005828,22285838,280011,2,Ehbp1-201,232450,Ehbp1-201;Ehbp1-202;Ehbp1-207,Ehbp1;Ehbp1;Ehbp1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,34,45,216565,ENSMUSG00000042302,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
937,cg09103452,0.0000234,0.000012,1.953516831,0.051657613,gain,ns,0.0000881,0.0000204,4.328634214,0.0000203,pos,ns,0.006077809,0.005962495,1.019339937,0.308836457,pos,ns,0.510271438,0.00010336,0.00020505,0.504071522,0.61456917,pos,ns,0.436647177,Gata3,Gata3_Promoter,2,9892577,9892626,9892577,9892578,50,-,CGGCGCTTGCCTGCTCACCAGTGTTTTATGGCGTTTTCTTGCCTCTGACT,Promoter (2-3kb),2,9874702,9890034,15333,2,Gata3-202,-2592,9230102O04Rik-202;Gata3-202;Gata3-204;Gata3-203,9230102O04Rik;Gata3;Gata3;Gata3,-3037;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,12,21,14462,ENSMUSG00000015619,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
25495,cg16043309,0.00000174,0.00000863,0.201246411,0.840637884,gain,ns,0.0000635,0.0000147,4.328714724,0.0000203,pos,ns,0.009163852,0.004297099,2.132567088,0.033745773,pos,ns,1.47178062,0.00000937,0.000147777,0.063410284,0.949480665,pos,ns,0.744763066,Epha8,Epha8_Exon,4,136936053,136936102,136936101,136936102,50,-,ACCTCCATGGCCTGGCTGAAGCGGCCACAGCCTGCTGAGGTGCGGGCTCG,"Exon (Epha8-201/Epha8, exon 7 of 17)",4,136929419,136956816,27398,2,Epha8-201,20714,Epha8-201,Epha8,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,4,13842,ENSMUSG00000028661,conserved gene and region,4,136936045,136936153,109,*,109,9,0.678899083,0.721323529,0.082568807,0.0000019,CpGisland,TRUE,U11,Tr-P
5550,cg04841737,0.0000348,0.00000316,11.01717556,4.85E-24,gain,yes,-0.0000232,0.00000536,-4.322176654,0.0000208,neg,ns,-0.000648986,0.001571487,-0.412975358,0.679910161,neg,ns,0.167548468,0.0000894,0.000054,1.653419048,0.099257873,pos,ns,0.958917934,Pbx3,Pbx3_Intron,2,34244868,34244917,34244916,34244917,50,+,TTCCTTTCCCACACACTAGCAAAGTCCATTTTCACAACTGCTATAAAGCG,"Intron (Pbx3-202/Pbx3, intron 2 of 7)",2,34171457,34372038,200582,2,Pbx3-202,127121,Pbx3-202;Pbx3-201;Pbx3-210;Pbx3-206;Pbx3-207;Pbx3-209;Pbx3-204;Pbx3-205;Pbx3-203,Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,82,18516,ENSMUSG00000038718,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19815,cg00908601,0.0000367,0.0000109,3.368138759,0.000852264,gain,ns,0.0000801,0.0000185,4.322415129,0.0000208,pos,ns,0.015906863,0.005426388,2.931390635,0.003625471,pos,ns,2.440635597,-0.000356955,0.000186613,-1.912808613,0.056693761,neg,ns,0.5809584,Foxo4,Foxo4_threeUTR,X,101260782,101260831,101260782,101260783,50,+,CGCCTGGCCTACCCAGATTGTATCATGTGCTAGATTGGAGTGGGGAAGTG,3' UTR,20,101254528,101260873,6346,1,Foxo4-201,6254,Foxo4-201;Foxo4-203;Foxo4-202;Gm20489-201;Gm614-202;Gm614-201;Il2rg-201;Il2rg-203,Foxo4;Foxo4;Foxo4;Gm20489;Gm614;Gm614;Il2rg;Il2rg,0;0;0;8192;3144;3161;7424;6603,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,2,54601,ENSMUSG00000042903,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5681,cg01368226,-0.00000846,0.00000562,-1.506196458,0.133035022,loss,ns,-0.0000412,0.00000954,-4.322120572,0.0000208,neg,ns,0.006449559,0.002794717,2.307767989,0.021670306,pos,ns,1.664134958,-0.000114599,0.0000961,-1.192370827,0.234027786,neg,ns,0.881567774,Mapkap1,Mapkap1_Intron,2,34535321,34535370,34535321,34535322,50,-,CGCAGAGATAGAATTAAATGATGATGATCTTCCCACAAGTTGGGAGAGGA,"Intron (Mapkap1-204/Mapkap1, intron 6 of 10)",2,34406862,34623475,216614,1,Mapkap1-204,128459,Mapkap1-204;Mapkap1-202;Mapkap1-201;Mapkap1-209;Mapkap1-203;Mapkap1-207,Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,59,227743,ENSMUSG00000038696,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1052,cg04282184,0.0000675,0.000012,5.603610304,4.64E-08,gain,yes,0.0000884,0.0000205,4.321756941,0.0000209,pos,ns,0.032626548,0.005993043,5.444070753,0.000000106,pos,ns,6.974458136,-0.000585687,0.0002061,-2.841757128,0.004783908,neg,ns,0.464727955,Gm14481,Gm14481_Intergenic_downstream,X,11250261,11250310,11250261,11250262,50,+,CGGTTGGCTTGGAGTGACAGTGATAGATTAAATGCACCAATTAAATTAGA,Distal Intergenic,20,11220607,11221235,629,1,Gm14481-201,29654,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,5,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10310,cg13110075,0.0000377,0.00000965,3.909488965,0.000113645,gain,ns,0.0000708,0.0000164,4.321643469,0.0000209,pos,ns,0.024274004,0.004801324,5.055689649,0.000000735,pos,ns,6.133801164,-0.000325669,0.000165117,-1.9723503,0.049458127,neg,ns,0.215322303,Gm14586,Gm14586_Exon,X,52743952,52744001,52744000,52744001,50,+,ACAAAGCATCATGGGAAACGGAGTTCTCCATTCAAAGCACCAAAAACGCG,"Exon (Kis2-202/Kis2-202, exon 1 of 2)",20,52772342,52772749,408,2,Gm14586-201,28748,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,2,100041925,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
17544,cg06579347,-0.0000193,0.0000151,-1.281296398,0.201047186,loss,ns,-0.000110722,0.0000256,-4.321104237,0.0000209,neg,ns,-0.02246903,0.007506831,-2.993144538,0.002983223,neg,ns,2.525314244,-0.0000811,0.000258159,-0.314290856,0.75351155,neg,ns,0.887665181,Mtch2,Mtch2_Exon,2,90849371,90849420,90849419,90849420,50,+,GTGGGATATGAGCCTCTTCCTCCAACAATAGGACGAAATATTTTTGGGCG,"Exon (Mtch2-205/Mtch2, exon 2 of 13)",2,90847155,90866810,19656,1,Mtch2-205,2216,Mtch2-205;Mtch2-203;Mtch2-210;Mtch2-211;Mtch2-209;Mtch2-202;Mtch2-201;Mtch2-208;Mtch2-207,Mtch2;Mtch2;Mtch2;Mtch2;Mtch2;Mtch2;Mtch2;Mtch2;Mtch2,0;0;0;0;0;0;0;-2771;-3406,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,56428,ENSMUSG00000027282,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27249,cg26938944,0.0000198,0.0000113,1.753539432,0.080497737,gain,ns,0.0000828,0.0000192,4.317319809,0.0000213,pos,ns,0.032783661,0.005617979,5.835490667,1.35E-08,pos,ns,7.869576191,-0.001445635,0.000193202,-7.482509936,7.58E-13,neg,yes,0.606178353,Nhs,Nhs_Intron,X,161940965,161941014,161941013,161941014,50,+,GCCTGCACACATTTTTCACATTAGGGAACAGATGGAAGCTGTAATTCCCG,"Intron (Nhs-202/Nhs, intron 1 of 8)",20,161833296,162159730,326435,2,Nhs-202,218716,Nhs-202;Nhs-201,Nhs;Nhs,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,12,195727,ENSMUSG00000059493,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17130,cg01980251,0.000076,0.0000106,7.17287878,5.43E-12,gain,yes,-0.0000777,0.000018,-4.31514743,0.0000215,neg,ns,-0.021697042,0.005274118,-4.113870784,0.0000499,neg,ns,4.301848098,0.000577239,0.000181376,3.182544259,0.001607951,pos,ns,0.730943359,Rufy3,Rufy3_Exon,5,88584185,88584234,88584233,88584234,50,+,GACAAGATCACACAGGCTGCCATGGAGACCATCTACCTTTGCAAATTCCG,"Exon (Rufy3-207/Rufy3, exon 2 of 15)",5,88565040,88642695,77656,1,Rufy3-203,19145,Rufy3-203;Rufy3-205;Rufy3-207;Rufy3-201;Rufy3-204;Rufy3-206;Rufy3-202,Rufy3;Rufy3;Rufy3;Rufy3;Rufy3;Rufy3;Rufy3,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,4,52822,ENSMUSG00000029291,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21682,cg11219763,0.0000177,0.0000126,1.411599549,0.159070805,gain,ns,0.000092,0.0000213,4.314887818,0.0000215,pos,ns,0.020590816,0.006249267,3.294916802,0.001098597,pos,ns,2.959161612,-0.000690071,0.000214912,-3.210951522,0.001461792,neg,ns,0.35107936,Brwd3,Brwd3_Intron,X,108832786,108832835,108832834,108832835,50,-,CGTATTTCAGGCCAGGACCAACCAGAAACCAGTTTTCTTCCACTAATCCG,"Intron (Brwd3-205/Brwd3, intron 4 of 40)",20,108737016,108834348,97333,2,Brwd3-205,1513,Brwd3-205;Brwd3-201;Brwd3-204;Brwd3-203;Brwd3-202,Brwd3;Brwd3;Brwd3;Brwd3;Brwd3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,5,382236,ENSMUSG00000063663,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
1078,cg22102193,-0.0000569,0.0000115,-4.928478272,0.00000135,loss,yes,0.0000846,0.0000196,4.312076308,0.0000218,pos,ns,0.020065845,0.005746919,3.491582982,0.000549907,pos,ns,3.259710725,-0.000371563,0.000197636,-1.880034769,0.061040926,neg,ns,0.604583806,Gm14515,Gm14515_Intergenic_upstream,X,11494376,11494425,11494376,11494377,50,-,CGGCATTTCTTCCGACTGTCAGACTTAGCAGATTGCTTTCTGGAAAGGAT,Distal Intergenic,20,11601354,11601569,216,1,Gm14515-201,-106978,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,21,28,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21444,cg16165290,0.0000133,0.00000406,3.274684017,0.001177508,gain,ns,-0.0000298,0.0000069,-4.31096358,0.0000219,neg,ns,-0.006068714,0.002022299,-3.00089861,0.002910411,neg,ns,2.536045604,0.000154333,0.0000695,2.219130962,0.027201541,pos,ns,0.846955324,Zswim6,Zswim6_Intron,13,107767420,107767469,107767468,107767469,50,+,AGCCAGAAGCCTGCAGAAAACACCAATTAACTTGCAGATCCCATTTGCCG,"Intron (Zswim6-204/Zswim6, intron 4 of 12)",13,107724617,107890064,165448,2,Zswim6-204,122595,Zswim6-204;Zswim6-201,Zswim6;Zswim6,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,26,67263,ENSMUSG00000032846,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14124,cg26637809,0.0000243,0.0000128,1.900459544,0.058300358,gain,ns,0.0000934,0.0000217,4.306781246,0.0000223,pos,ns,0.018654102,0.006353582,2.935997931,0.00357351,pos,ns,2.446904976,-0.000385449,0.000218499,-1.764075127,0.078704216,neg,ns,0.306478124,Hoxd10,Hoxd10_Exon,2,74692196,74692245,74692244,74692245,50,+,CCTTATATACCTCAAGTAGACAGTTGGACAGATCCGAACAGATCTTGTCG,Promoter (<=1kb),2,74691924,74695105,3182,1,Hoxd10-201,272,Hoxd10-201,Hoxd10,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,21,24,15430,ENSMUSG00000050368,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
24792,cg09201244,-0.0000166,0.00000308,-5.401508491,0.000000132,loss,yes,-0.0000225,0.00000524,-4.305417394,0.0000224,neg,ns,-0.003851552,0.001533688,-2.511301144,0.012537027,neg,ns,1.901805431,-0.000125313,0.0000527,-2.375904248,0.018113494,neg,ns,0.900861363,Smarcc2,Smarcc2_Exon,10,128481662,128481711,128481662,128481663,50,+,CGCCAAGCTCTGTCCCCCAGGGCCGCCAGGTTGATGCTGATACCAAGGCT,"Exon (Smarcc2-202/Smarcc2, exon 18 of 29)",10,128459248,128490482,31235,1,Smarcc2-205,22414,Smarcc2-205;Smarcc2-201;Smarcc2-202;Smarcc2-203;Smarcc2-204,Smarcc2;Smarcc2;Smarcc2;Smarcc2;Smarcc2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,16,68094,ENSMUSG00000025369,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24994,cg25649770,0.000137597,0.0000272,5.060187918,0.000000719,gain,yes,0.000198817,0.0000462,4.303781659,0.0000225,pos,ns,0.037874022,0.013533801,2.798476394,0.005455966,pos,ns,2.263128364,-0.000959689,0.000465426,-2.061957738,0.04004493,neg,ns,0.464227032,Spef1,Spef1_Exon,2,131171910,131171959,131171958,131171959,50,-,TCTCTTGAGAGGCCAACAGCTCCTGCTCCTTTTCAGCGATCTGGAGGACG,"Exon (Spef1-201/Spef1, exon 7 of 8)",2,131170261,131187282,17022,2,Spef1-201,15323,Cenpb-201;Spef1-201;Spef1-202;Spef1-203,Cenpb;Spef1;Spef1;Spef1,8108;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,70997,ENSMUSG00000027329,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
25425,cg10042482,0.00000842,0.0000098,0.859753026,0.390589572,gain,ns,0.0000716,0.0000166,4.302155344,0.0000227,pos,ns,0.004559369,0.004877102,0.934851912,0.35059225,pos,ns,0.455197688,-0.000115027,0.000167723,-0.685816544,0.493341368,neg,ns,0.872574172,Cux1,Cux1_Intron,5,136462748,136462797,136462796,136462797,50,-,ACTGACAATGTGAATATAGTAATTGGGGCTGATTTCTTGGCGCCTGGCCG,"Intron (Cux1-207/Cux1, intron 2 of 22)",5,136248135,136567248,319114,2,Cux1-207,104451,Cux1-207;Cux1-211;Cux1-203;Cux1-213;Cux1-201;Cux1-204;Cux1-212;Cux1-206;Cux1-210,Cux1;Cux1;Cux1;Cux1;Cux1;Cux1;Cux1;Cux1;Cux1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,21,13047,ENSMUSG00000029705,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6713,cg27236661,0.0000414,0.000012,3.439621164,0.000662303,gain,ns,0.000088,0.0000204,4.301468529,0.0000228,pos,ns,0.023766965,0.005990409,3.967502592,0.0000903,pos,ns,4.044407864,-0.000328669,0.00020601,-1.595405791,0.111640449,neg,ns,0.448671117,Pcdh1,Pcdh1_Intergenic_downstream,18,38158661,38158710,38158661,38158662,50,-,CGCGGGCAGGCAGAGAAGCACCACACAAGAAATTGATTCCATTAAAAAGT,Distal Intergenic,18,38188890,38203163,14274,2,Pcdh1-204,44502,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,17,75599,ENSMUSG00000051375,conserved gene and region,18,38158603,38158664,62,*,62,7,0.709677419,0.96875,0.112903226,0.00000583,CpGisland,TRUE,NA,NRS
18420,cg11591093,0.0000166,0.00000313,5.296590136,0.000000224,gain,yes,-0.0000228,0.00000531,-4.299822516,0.0000229,neg,ns,0.004655755,0.001555525,2.993045019,0.002984169,pos,ns,2.525176656,-0.000134834,0.0000535,-2.52051976,0.01221991,neg,ns,0.951687413,Spop,Spop_fiveUTR,11,95470580,95470629,95470628,95470629,50,-,AACTGGCGATGTCAAGGGTTCCAAGTCCTCCACCTCCGGCAGAAATGTCG,5' UTR,11,95414080,95493406,79327,1,Spop-202,56500,Spop-202;Spop-204;Spop-201;Spop-203;Spop-205,Spop;Spop;Spop;Spop;Spop,0;0;0;0;-3690,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,3,20747,ENSMUSG00000057522,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12227,cg25895486,-0.00000556,0.00000374,-1.484101966,0.138797907,loss,ns,-0.0000273,0.00000636,-4.297753029,0.0000231,neg,ns,0.007650565,0.001863624,4.105209339,0.0000517,pos,ns,4.286405363,-0.000228526,0.0000641,-3.565715025,0.000420125,neg,ns,0.945037348,Ptch1,Ptch1_Exon,13,63540765,63540814,63540765,63540766,50,+,CGCCAGCCAGCCCCACGGCACCCTGGGACTTGGAGCAGTCCCAGCGCAGC,"Exon (Ptch1-201/Ptch1, exon 10 of 23)",13,63508328,63565735,57408,2,Ptch1-201,24921,Ptch1-201;Ptch1-204;Ptch1-206;Ptch1-202;Ptch1-210;Ptch1-207;Ptch1-203;Ptch1-205;Ptch1-208,Ptch1;Ptch1;Ptch1;Ptch1;Ptch1;Ptch1;Ptch1;Ptch1;Ptch1,0;0;0;0;-1087;0;0;0;4502,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,36,19206,ENSMUSG00000021466,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22040,cg26227005,-0.0000397,0.0000142,-2.794735515,0.005517898,loss,ns,0.000103634,0.0000241,4.293598702,0.0000235,pos,ns,0.010153883,0.007071291,1.43593059,0.152030386,pos,ns,0.818069602,-0.000169728,0.000243181,-0.697947933,0.485732931,neg,ns,0.398108102,Elavl4,Elavl4_Intron,4,110287601,110287650,110287601,110287602,50,+,CGAAGGGAGGCGTTGCAACATCAGGTGCTATTTAAATTAGCTACTGCCAG,"Intron (Elavl4-205/Elavl4, intron 1 of 6)",4,110203737,110290272,86536,2,Elavl4-205,2622,Elavl4-204;Elavl4-201;Elavl4-203;Elavl4-202;Elavl4-205;Elavl4-206;Elavl4-207;Elavl4-208;Elavl4-212;Elavl4-209,Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,36,15572,ENSMUSG00000028546,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20834,cg09998296,0.0000445,0.0000164,2.705182942,0.00720419,gain,ns,-0.000119883,0.0000279,-4.291230096,0.0000238,neg,ns,0.021083065,0.008184537,2.57596312,0.010458964,pos,ns,1.980511312,-0.001067008,0.000281466,-3.790901518,0.000180374,neg,ns,0.421170363,Rpl10-ps1,Rpl10-ps1_Intron,2,105608248,105608297,105608248,105608249,50,-,CGTGTGGTGGTTTCAGCATGAGACAGTTACTCAGTTTAATGCCAAATACA,"Intron (Pax6os1-202/Pax6os1-202, intron 1 of 3)",2,105554201,105554845,645,2,Rpl10-ps1-201,-53452,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,100043391,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
634,cg01125381,0.0000436,0.00000748,5.832193651,1.38E-08,gain,yes,0.0000545,0.0000127,4.289298848,0.000024,pos,ns,0.008661971,0.003724176,2.325876125,0.020669929,pos,ns,1.684661014,-0.000118825,0.000128074,-0.927785921,0.354240422,neg,ns,0.51907986,Usp27x,Usp27x_fiveUTR,X,7375017,7375066,7375065,7375066,50,+,TGCAGGACTTTGCCTTGCTTTTCCTGGTCTCTGGGGTTCCACACCACACG,Promoter (<=1kb),20,7371274,7375826,4553,2,Usp27x-202,760,Usp27x-202;Usp27x-203;Usp27x-201,Usp27x;Usp27x;Usp27x,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,6,54651,ENSMUSG00000046269,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19516,cg26226631,0.0000327,0.00000609,5.362993144,0.00000016,gain,yes,-0.0000444,0.0000103,-4.288844075,0.000024,neg,ns,-0.010353646,0.003032097,-3.414681965,0.000723562,neg,ns,3.140524327,0.000234812,0.000104274,2.251881493,0.025029466,pos,ns,0.873615105,Armc8,Armc8_threeUTR,9,99520415,99520464,99520415,99520416,50,+,CGACTTTCAGGTTGACGTCACTCCCTGCCTGCTGGCTGTCAGGACTGGGG,3' UTR,9,99478372,99568899,90528,2,Armc8-201,48435,Armc8-201;Armc8-202;Armc8-203,Armc8;Armc8;Armc8,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,10,74125,ENSMUSG00000032468,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
708,cg03340793,0.00000385,0.00000741,0.519284846,0.603932658,gain,ns,0.000054,0.0000126,4.288458644,0.0000241,pos,ns,0.008327235,0.003688752,2.257466499,0.024674524,pos,ns,1.607751219,-0.000126408,0.000126856,-0.996465487,0.319801189,neg,ns,0.787192472,Porcn,Porcn_Exon,X,8204272,8204321,8204272,8204273,50,+,CGAGGTAGCACAGGAGGCTGAGCAGCACGACCCAAACCATGTGCAGCTGG,"Exon (Porcn-202/Porcn, exon 3 of 14)",20,8193848,8206525,12678,2,Porcn-202,2204,Porcn-202;Porcn-207;Porcn-201;Porcn-203;Porcn-204;Porcn-205;Porcn-206,Porcn;Porcn;Porcn;Porcn;Porcn;Porcn;Porcn,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,4,53627,ENSMUSG00000031169,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18418,cg07609421,0.0000139,0.00000343,4.063406543,0.0000613,gain,ns,-0.000025,0.00000582,-4.287255931,0.0000242,neg,ns,0.009828047,0.00170509,5.763945206,1.98E-08,pos,ns,7.702453512,-0.000237759,0.0000586,-4.054695066,0.0000636,neg,ns,0.918496998,Spop,Spop_fiveUTR,11,95470586,95470635,95470586,95470587,50,+,CGATGTCAAGGGTTCCAAGTCCTCCACCTCCGGCAGAAATGTCGAGTGGC,5' UTR,11,95414080,95493406,79327,1,Spop-202,56506,Spop-202;Spop-204;Spop-201;Spop-203;Spop-205,Spop;Spop;Spop;Spop;Spop,0;0;0;0;-3684,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,3,20747,ENSMUSG00000057522,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3551,cg12835446,0.0000391,0.00000548,7.129649615,7.12E-12,gain,yes,-0.0000399,0.00000931,-4.284740042,0.0000244,neg,ns,-0.006872998,0.002726185,-2.521104493,0.012200039,neg,ns,1.913638784,0.000180489,0.0000938,1.92515018,0.055125297,pos,ns,0.880470537,Agap3,Agap3_Intron,5,24490585,24490634,24490633,24490634,50,-,TTAATAGCTTTCCACGCTCTGAACTCGTTGTTAATTCCAGTAATAAAACG,"Intron (Agap3-201/Agap3, intron 10 of 17)",5,24452177,24502047,49871,1,Agap3-201,38408,Agap3-201;Agap3-202,Agap3;Agap3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,13,213990,ENSMUSG00000023353,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27007,cg05845204,0.0000139,0.00000599,2.326237529,0.020650382,gain,ns,-0.0000436,0.0000102,-4.281478613,0.0000248,neg,ns,0.025110346,0.002982335,8.419692963,1.42E-15,pos,yes,14.84796347,-0.000711347,0.000102562,-6.935755896,2.36E-11,neg,yes,0.880892114,Rbm39,Rbm39_threeUTR,2,156167535,156167584,156167583,156167584,50,-,TACCTCACAGGGCTCTTGTCTTTTCTGAATGGACTTTTGCTTCGGGAACG,3' UTR,2,156147239,156180238,33000,2,Rbm39-203,12654,Rbm39-203;Rbm39-217;Rbm39-215;Rbm39-201;Rbm39-225;Rbm39-223;Rbm39-220;Rbm39-204;Rbm39-209;Rbm39-207;Rbm39-206;Rbm39-216;Rbm39-221;Rbm39-213;Rbm39-214,Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39,0;0;0;0;0;0;-2612;0;-2323;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,11,13,170791,ENSMUSG00000027620,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25944,cg14795764,0.0000423,0.00000875,4.838589274,0.00000207,gain,ns,-0.0000636,0.0000149,-4.280638962,0.0000249,neg,ns,-0.007391047,0.004353111,-1.697877193,0.09053445,neg,ns,1.04318613,0.000425129,0.000149703,2.839813773,0.004812391,pos,ns,0.891257148,Spen,Spen_Exon,4,141517262,141517311,141517262,141517263,50,-,CGTTCATGGTGTCCATAGGCACTATGTTCATAAGCACGCTCCCTGTTATC,"Exon (Spen-201/Spen, exon 3 of 15)",4,141467890,141538449,70560,2,Spen-201,21138,Spen-201;Spen-202;Spen-203;Spen-205,Spen;Spen;Spen;Spen,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,17,19,56381,ENSMUSG00000040761,conserved gene and region,4,141517106,141517299,194,*,194,13,0.510309278,1.030228758,0.067010309,4.64E-08,CpGisland,TRUE,U10,Tr-S
16819,cg03257592,0.000031,0.0000153,2.030192366,0.043190516,gain,ns,0.000110781,0.0000259,4.271573756,0.0000258,pos,ns,0.008541887,0.007597945,1.124236508,0.261782482,pos,ns,0.582059418,0.0000267,0.000261293,0.102284868,0.918596696,pos,ns,0.746555562,Gm8504,Gm8504_Intergenic_upstream,12,86635946,86635995,86635946,86635947,50,-,CGCTGGTAAATCTTTATTAATTTTAATTGGCGGCACCCATTTATAAGAAC,Distal Intergenic,12,86650573,86651662,1090,1,Gm8504-201,-14627,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,8,667191,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16285,cg03328885,0.000182912,0.0000175,10.47575137,3.49E-22,gain,yes,-0.000126641,0.0000297,-4.269306855,0.0000261,neg,ns,0.004949193,0.008690272,0.56950949,0.569422869,pos,ns,0.244565095,0.000225946,0.000298858,0.756033259,0.450203368,pos,ns,0.46263081,Nfix,Nfix_Exon,8,84716282,84716331,84716282,84716283,50,-,CGTTGGGCTGCGAACAACATAAATAGAGTGACGCATGAAGGCACATCACA,"Exon (Nfix-204/Nfix, exon 9 of 11)",8,84704712,84773396,68685,2,Nfix-204,57065,Nfix-204;Nfix-201;Nfix-202;Nfix-203;Nfix-206;Nfix-205,Nfix;Nfix;Nfix;Nfix;Nfix;Nfix,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,20,49,18032,ENSMUSG00000001911,conserved gene but different region,8,84716235,84716387,153,*,153,15,0.62745098,1,0.098039216,1.26E-11,CpGisland,TRUE,NA,NRS
6820,cg09463627,0.0000292,0.00000465,6.292768783,1.06E-09,gain,yes,-0.0000337,0.0000079,-4.26639033,0.0000264,neg,ns,-0.000828313,0.002313055,-0.358103396,0.720509655,neg,ns,0.142360195,-0.000108951,0.0000795,-1.369665369,0.171782683,neg,ns,0.904714867,Psmb7,Psmb7_Intron,2,38595172,38595221,38595172,38595173,50,-,CGAGTGCTTGAGGGGACAAAACAGACCCCCAAGTTCATTAAACTGACCAG,"Intron (Psmb7-201/Psmb7, intron 6 of 7)",2,38588036,38644087,56052,2,Psmb7-201,48866,Nek6-201;Psmb7-201,Nek6;Psmb7,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,9,19177,ENSMUSG00000026750,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23371,cg05101180,-0.0000116,0.000011,-1.060599448,0.289697586,loss,ns,0.0000794,0.0000186,4.263744232,0.0000267,pos,ns,0.000272623,0.005453526,0.049990269,0.960162337,pos,ns,0.017655334,0.0000748,0.000187546,0.39880663,0.690310256,pos,ns,0.431339528,Sox21,Sox21_Intergenic_downstream,14,118194728,118194777,118194728,118194729,50,+,CGTTTCCATTGCACTTTTACCCAAGGCAATGGGCAGAATTTAACGGATTC,Distal Intergenic,14,118233232,118237030,3799,2,Sox21-201,42253,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,26,27,223227,ENSMUSG00000061517,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
8105,cg11540609,-0.00000402,0.0000181,-0.222318457,0.824212381,loss,ns,0.000131051,0.0000308,4.261314091,0.000027,pos,ns,0.015822584,0.009009795,1.756153683,0.080049623,pos,ns,1.09664071,0.000321642,0.000309846,1.038069448,0.300046727,pos,ns,0.447602384,Pax2,Pax2_Promoter,19,44748175,44748224,44748223,44748224,50,+,ATGGTGTTGAAGATGGAATTCAATTGAGAGCCCATCTGTGCACCCCCTCG,Promoter (7-8kb),19,44756045,44837851,81807,1,Pax2-203,-7821,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,5,166,18504,ENSMUSG00000004231,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
11542,cg01759284,0.00000203,0.00000259,0.784907086,0.433107464,gain,ns,-0.0000187,0.00000439,-4.259672607,0.0000272,neg,ns,0.001260009,0.001286988,0.979037202,0.328325012,pos,ns,0.483696031,-0.0000593,0.0000443,-1.340882483,0.180940289,neg,ns,0.876209287,Pnn,Pnn_Exon,12,59071443,59071492,59071443,59071444,50,-,CGCATCGAATTTGCAGAACAAATAAATAAAATGGAGGCTAGGCCTAGAAG,"Exon (Pnn-201/Pnn, exon 9 of 9)",12,59066884,59073998,7115,1,Pnn-201,4559,Pnn-201;Pnn-203;Pnn-204;Pnn-202,Pnn;Pnn;Pnn;Pnn,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,18949,ENSMUSG00000020994,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13151,cg23976139,0.0000151,0.00000338,4.463525428,0.0000113,gain,ns,-0.0000244,0.00000574,-4.258697589,0.0000273,neg,ns,-0.002875548,0.001680609,-1.71101515,0.088078649,neg,ns,1.055129356,0.0000241,0.0000578,0.417357597,0.676705759,pos,ns,0.891099278,Ikzf2,Ikzf2_Exon,1,69577815,69577864,69577863,69577864,50,-,GGGCCCAATGCAAACCATGCCACAGACGTCACATTTCAGTTTACCATTCG,"Exon (Ikzf2-201/Ikzf2, exon 4 of 8)",1,69531214,69685821,154608,2,Ikzf2-201,107957,Ikzf2-201;Ikzf2-207;Ikzf2-202;Ikzf2-204;Ikzf2-208;Ikzf2-209;Ikzf2-206,Ikzf2;Ikzf2;Ikzf2;Ikzf2;Ikzf2;Ikzf2;Ikzf2,0;0;0;0;0;0;107436,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,14,22779,ENSMUSG00000025997,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3036,cg13885520,-0.000140693,0.0000637,-2.210301557,0.027814394,loss,ns,0.00046049,0.000108139,4.258327676,0.0000273,pos,ns,-0.001407611,0.031680998,-0.044430765,0.964589645,neg,ns,0.015657405,0.002745519,0.001089507,2.519964382,0.012238811,pos,ns,0.861792337,Lrmda,Lrmda_Intron,14,22457711,22457760,22457759,22457760,50,+,ACTCCTTCCTTTCTTTATAGAATGCAAATTGTAACCTGTTTTTAAAGCCG,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,437999,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206;Lrmda-202,Lrmda;Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11022,cg16238815,0.00000507,0.000023,0.220626607,0.825528415,gain,ns,0.000166239,0.000039,4.257883482,0.0000274,pos,ns,0.038713096,0.011438202,3.384543808,0.000804643,pos,ns,3.094396587,-0.000605598,0.000393359,-1.53955554,0.124688816,neg,ns,0.318592622,Mbip,Mbip_Intergenic_downstream,12,56302135,56302184,56302135,56302136,50,-,CGCGGCGTGTGCCCTGACTTGATTGTAATTGCCCGAATCTGCTCCCGCTG,Distal Intergenic,12,56340511,56345821,5311,2,Mbip-202,43686,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,12,13,217588,ENSMUSG00000021028,conserved gene and region,12,56302089,56302194,106,*,106,9,0.566037736,1.07918552,0.08490566,0.0000015,CpGisland,TRUE,U2,Pr-W
5101,cg18722778,-0.00000691,0.0000127,-0.543632639,0.587085021,loss,ns,0.0000918,0.0000216,4.254910111,0.0000277,pos,ns,0.024195571,0.006321834,3.82730274,0.000156719,pos,ns,3.804879063,-0.000665128,0.000217407,-3.059365413,0.002411736,neg,ns,0.514960243,Dnm1,Dnm1_Exon,2,32318479,32318528,32318479,32318480,50,+,CGTCTACCCAGTGTTTAGACTATCTGTTCAGGACTCCCAAATTGTACAGT,"Exon (Mir199b-201/Mir199b-201, exon 1 of 1)",2,32308471,32353263,44793,2,Dnm1-204,34735,Dnm1-204;Dnm1-209;Dnm1-202;Dnm1-201;Dnm1-203;Dnm1-205;Dnm1-214;Dnm1-206;Dnm1-216;Dnm1-217;Dnm1-213,Dnm1;Dnm1;Dnm1;Dnm1;Dnm1;Dnm1;Dnm1;Dnm1;Dnm1;Dnm1;Dnm1,0;0;0;0;0;0;0;0;0;0;-1148,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,16,13429,ENSMUSG00000026825,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
21884,cg11514271,-0.00000231,0.00000718,-0.321680785,0.74791133,loss,ns,0.0000519,0.0000122,4.252669745,0.000028,pos,ns,0.005850906,0.003575127,1.636558719,0.102737471,pos,ns,0.988271128,0.000132378,0.000122948,1.076699266,0.282451825,pos,ns,0.875741917,Gm13925,Gm13925_Intergenic_downstream,2,109544141,109544190,109544189,109544190,50,-,GATAAAAATTTAGCATTTTGGTCACTCCCTGTCCCCTGAGCAGAGCTCCG,Distal Intergenic,2,109477003,109499200,22198,1,Gm13925-201,67187,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14741,cg24676204,0.0000185,0.00000694,2.669393943,0.007999125,gain,ns,-0.0000501,0.0000118,-4.25216083,0.0000281,neg,ns,0.018971702,0.003451636,5.496437304,0.000000081,pos,ns,7.091465981,-0.000716252,0.000118701,-6.034063598,4.56E-09,neg,yes,0.740403372,Git1,Git1_Exon,11,77506506,77506555,77506554,77506555,50,+,GGACTTCCAGCTGCTGACTCAGCAGGTGATCCAGTGCGCCTATGACATCG,"Exon (Git1-201/Git1, exon 20 of 20)",11,77493562,77507786,14225,1,Git1-201,12944,Git1-201;Git1-202;Git1-206;Git1-203;Git1-205;Git1-204;Trp53i13-201;Trp53i13-203;Trp53i13-202;Trp53i13-204,Git1;Git1;Git1;Git1;Git1;Git1;Trp53i13;Trp53i13;Trp53i13;Trp53i13,0;0;7415;5518;4027;1370;6815;6208;6480;9176,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,216963,ENSMUSG00000011877,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14906,cg24543303,-0.0000167,0.00000245,-6.790714655,5.70E-11,loss,yes,-0.0000177,0.00000417,-4.247236375,0.0000286,neg,ns,0.004240759,0.0012215,3.471764348,0.000590486,pos,ns,3.228790466,-0.000145463,0.000042,-3.462807739,0.000609729,neg,ns,0.976645262,Fam222b,Fam222b_fiveUTR,11,78153792,78153841,78153840,78153841,50,+,AAAATCTTCCCCAACAGTGTGAAGGTTCCCCAGCGGAAACACGTTCGTCG,5' UTR,11,78094660,78156700,62041,1,Fam222b-201,59132,Fam222b-201;Fam222b-202;Fam222b-203;Gm12571-201;Traf4-203,Fam222b;Fam222b;Fam222b;Gm12571;Traf4,0;0;0;-4354;11748,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,10,21,216971,ENSMUSG00000037750,conserved gene and region,11,78153825,78153900,76,*,76,9,0.631578947,1.266666667,0.118421053,8.12E-08,CpGisland,TRUE,U10,Tr-S
4677,cg09260569,0.0000613,0.00000562,10.91527648,1.09E-23,gain,yes,-0.0000405,0.00000954,-4.246895038,0.0000287,neg,ns,0.004966256,0.002796104,1.776134347,0.07669158,pos,ns,1.115252315,-0.000226389,0.0000962,-2.354346149,0.019178867,neg,ns,0.861277549,Cacna1d,Cacna1d_Exon,14,30089831,30089880,30089879,30089880,50,+,GCTGAGGGCCACGTCTATAATGCTGCCGATTACGATGAGGGAGTCAAACG,"Exon (Cacna1d-202/Cacna1d, exon 30 of 47)",14,30039941,30491453,451513,2,Cacna1d-202,401573,Cacna1d-202;Cacna1d-201;Cacna1d-208;Cacna1d-209;Cacna1d-214;Cacna1d-204;Cacna1d-207;Cacna1d-218;Cacna1d-216;Cacna1d-217;Cacna1d-210;Cacna1d-219,Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,26,12289,ENSMUSG00000015968,conserved gene and region,14,30089796,30089891,96,*,96,9,0.572916667,1.145888594,0.09375,0.000000648,CpGisland,TRUE,U11,Tr-P
26619,cg26438184,-0.0000203,0.00000402,-5.048502305,0.000000761,loss,yes,-0.000029,0.00000682,-4.245822833,0.0000288,neg,ns,0.007116139,0.001998926,3.559981558,0.000429033,pos,ns,3.367509327,-0.000439533,0.0000687,-6.393868985,5.94E-10,neg,yes,0.873450031,Dennd5b,Dennd5b_Intron,6,149032449,149032498,149032497,149032498,50,-,GGTCCCACTCCCAGAATGCCATGGAGTTCTGACAGACCAAAAGTTCCCCG,"Intron (Dennd5b-201/Dennd5b, intron 8 of 20)",6,148988071,149101680,113610,2,Dennd5b-201,69182,Dennd5b-201;Dennd5b-205,Dennd5b;Dennd5b,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,3,320560,ENSMUSG00000030313,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25636,cg23832435,0.0000335,0.00000752,4.456761233,0.0000116,gain,ns,-0.0000542,0.0000128,-4.244240332,0.000029,neg,ns,-0.000319186,0.003741081,-0.085319213,0.932062693,neg,ns,0.030554875,0.0000652,0.000128655,0.50700855,0.612509274,pos,ns,0.797034107,Btbd3,Btbd3_Intron,2,137687310,137687359,137687358,137687359,50,+,CAGAGCTGGGGACACCAGGAGGGACAATGACCATGTAAGTGGTTCTCACG,"Intron (Gm14064-201/Gm14064-201, intron 2 of 4)",2,138256565,138287422,30858,1,Btbd3-202,-569206,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,6,228662,ENSMUSG00000062098,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4309,cg04312977,0.00000233,0.00000498,0.468420266,0.63981327,gain,ns,0.0000359,0.00000847,4.242660115,0.0000292,pos,ns,0.00243575,0.002480794,0.981842985,0.32694285,pos,ns,0.485528156,0.000103754,0.0000853,1.216135316,0.224858588,pos,ns,0.695331921,Dll3,Dll3_Exon,7,28298628,28298677,28298676,28298677,50,+,GTGGAGACAGGGACCGTGCAGAGGGGTCCAGTCCAGCCCTCTAGGCATCG,"Exon (Dll3-201/Dll3, exon 5 of 9)",7,28293553,28302238,8686,2,Dll3-201,3561,Dll3-201;Dll3-202;Dll3-203,Dll3;Dll3;Dll3,0;-4147;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,13389,ENSMUSG00000003436,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
1342,cg14764790,-0.0000019,0.0000246,-0.077382083,0.938369514,loss,ns,0.000177435,0.0000418,4.243022228,0.0000292,pos,ns,0.021982082,0.012251265,1.794270405,0.073744304,pos,ns,1.132271521,0.0000377,0.00042132,0.089412416,0.928811894,pos,ns,0.797639664,Cadps,Cadps_Intron,14,12389311,12389360,12389359,12389360,50,+,CAACAGATTGAGCCTCGTATAAAGGCCTGAGACTGTGCAAGGGTTCCCCG,"Intron (Cadps-210/Cadps, intron 27 of 28)",14,12372563,12823053,450491,2,Cadps-210,433693,Cadps-210;Cadps-202;Cadps-203;Cadps-204;Cadps-201;Cadps-212;Cadps-208,Cadps;Cadps;Cadps;Cadps;Cadps;Cadps;Cadps,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,34,27062,ENSMUSG00000054423,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19228,cg03850330,0.0000177,0.00000391,4.531453653,0.00000837,gain,ns,-0.0000282,0.00000664,-4.240944222,0.0000294,neg,ns,0.009183969,0.001944678,4.722615981,0.00000353,pos,ns,5.451842751,-0.000223451,0.0000669,-3.341208033,0.00093617,neg,ns,0.939775459,Msl1,Msl1_Exon,11,98800335,98800384,98800335,98800336,50,+,CGTTACCATTACGGGAATCCTCTCCAAAGAAGGAGGAGACTGTAGCAAGT,"Exon (Msl1-201/Msl1, exon 3 of 9)",11,98795516,98807859,12344,1,Msl1-201,4819,Casc3-201;Msl1-201;Msl1-203;Msl1-204;Msl1-202;Msl1-205;Msl1-206,Casc3;Msl1;Msl1;Msl1;Msl1;Msl1;Msl1,-4521;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,13,74026,ENSMUSG00000052915,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26689,cg22112884,0.00000907,0.00000421,2.155785414,0.031869672,gain,ns,0.0000303,0.00000715,4.240446265,0.0000295,pos,ns,0.00421283,0.002093545,2.012294958,0.045053506,pos,ns,1.346271412,-0.000121444,0.000072,-1.686797545,0.092648267,neg,ns,0.854495793,Fgd1,Fgd1_Exon,X,151086556,151086605,151086556,151086557,50,-,CGGGAAAAGGAAGTCACCATGTGCATGCGCTGCCAGGAGCCCTTCAATTC,"Exon (Fgd1-202/Fgd1, exon 15 of 18)",20,151046150,151089521,43372,1,Fgd1-202,40406,Fgd1-202;Fgd1-201;Fgd1-204;Tsr2-202;Tsr2-201;Tsr2-203;Tsr2-204,Fgd1;Fgd1;Fgd1;Tsr2;Tsr2;Tsr2;Tsr2,0;0;0;9938;9938;9938;9918,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,14163,ENSMUSG00000025265,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20096,cg07992814,0.000085,0.0000165,5.136639758,0.000000495,gain,yes,-0.000119099,0.0000281,-4.238551966,0.0000297,neg,ns,0.038330354,0.008232023,4.656249479,0.00000478,pos,ns,5.320355466,-0.001281425,0.000283099,-4.526426807,0.00000856,neg,ns,0.57988444,Gpatch8,Gpatch8_Exon,11,102531308,102531357,102531308,102531309,50,-,CGAACCTGGCTTTAAAAACTGGGCTGTCAAAAGAACAGTTAAATGTAACA,"Exon (Gpatch8-205/Gpatch8, exon 3 of 6)",11,102475915,102556199,80285,2,Gpatch8-206,24842,Gpatch8-206;Gpatch8-205;Gpatch8-203,Gpatch8;Gpatch8;Gpatch8,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,3,237943,ENSMUSG00000034621,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
22039,cg08106706,-0.0000523,0.0000126,-4.162032885,0.0000409,loss,ns,0.0000905,0.0000213,4.2386872,0.0000297,pos,ns,-0.00473886,0.006251705,-0.758010808,0.44902036,neg,ns,0.347733966,0.0000281,0.000214996,0.130921773,0.895922111,pos,ns,0.269072693,Elavl4,Elavl4_fiveUTR,4,110287479,110287528,110287527,110287528,50,-,CTAGGATGTAGATAAGAACAACTGAACAGAGCCTTGCTGAAATTGGCTCG,Promoter (<=1kb),4,110203722,110287527,83806,2,Elavl4-204,0,Elavl4-204;Elavl4-201;Elavl4-203;Elavl4-202;Elavl4-205;Elavl4-206;Elavl4-207;Elavl4-208;Elavl4-212;Elavl4-209,Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,7,36,15572,ENSMUSG00000028546,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23006,cg00672291,0.0000314,0.00000627,5.004676379,0.00000094,gain,yes,-0.0000451,0.0000106,-4.237064389,0.0000299,neg,ns,0.013641038,0.003119318,4.373083887,0.0000167,pos,ns,4.776043667,-0.000466907,0.000107273,-4.352509799,0.0000183,neg,ns,0.864543,Toe1,Toe1_Exon,4,116806308,116806357,116806308,116806309,50,+,CGGGTCCTGGCAGCATGACACACGGCCTTGTAACGTTCCTCAATGCACCT,"Exon (Toe1-202/Toe1, exon 4 of 9)",4,116794310,116807548,13239,2,Toe1-202,1191,Mutyh-201;Mutyh-203;Mutyh-202;Mutyh-206;Tesk2-201;Tesk2-203;Tesk2-202;Tesk2-204;Toe1-202;Toe1-201;Toe1-208;Toe1-207;Toe1-204;Toe1-203;Toe1-206;Toe1-205,Mutyh;Mutyh;Mutyh;Mutyh;Tesk2;Tesk2;Tesk2;Tesk2;Toe1;Toe1;Toe1;Toe1;Toe1;Toe1;Toe1;Toe1,-1366;-1368;-1381;-1391;85360;0;64625;34545;0;0;-1116;-703;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,68276,ENSMUSG00000028688,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
14432,cg01933423,0.0000207,0.0000105,1.980065243,0.048580201,gain,ns,-0.0000753,0.0000178,-4.236375455,0.00003,neg,ns,0.024101278,0.005209852,4.62609615,0.00000548,pos,ns,5.261102902,-0.000924533,0.000179166,-5.160191568,0.000000441,neg,yes,0.882243688,Ppp2r5e,Ppp2r5e_Exon,12,75593236,75593285,75593236,75593237,50,-,CGACCTCTTCTGTCTGGCTTTTCTGACGGACTTCCGAGAAAATCCGTCTA,"Exon (Ppp2r5e-201/Ppp2r5e, exon 2 of 14)",12,75450881,75596200,145320,2,Ppp2r5e-201,2915,Ppp2r5e-201;Ppp2r5e-205;Ppp2r5e-202;Ppp2r5e-204,Ppp2r5e;Ppp2r5e;Ppp2r5e;Ppp2r5e,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,7,26932,ENSMUSG00000021051,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10696,cg11736686,-0.0000627,0.0000133,-4.724478747,0.0000035,loss,ns,0.0000955,0.0000225,4.235698505,0.0000301,pos,ns,-0.011070345,0.006603381,-1.676466287,0.094655006,neg,ns,1.023856412,0.000481835,0.00022709,2.121780992,0.034649118,pos,ns,0.704150069,Myh7,Myh7_Exon,14,54989287,54989336,54989287,54989288,50,+,CGCTGCTTCAGCTTGAACTTCATGTTTCCAAAGTGCATGATGGCGCCTGT,"Exon (Myh7-201/Myh7, exon 13 of 41)",14,54970684,54994626,23943,2,Myh7-201,5290,Myh7-201;Myh7-204;Myh7-202;Myh7-208;Myh7-207;Myh7-203;Myh7-205,Myh7;Myh7;Myh7;Myh7;Myh7;Myh7;Myh7,0;0;-1869;4355;5207;5212;5207,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,140781,ENSMUSG00000053093,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5428,cg06196984,0.0000352,0.00000711,4.951817725,0.00000121,gain,yes,-0.0000511,0.0000121,-4.234721353,0.0000302,neg,ns,0.000927177,0.003536363,0.262183857,0.793353833,pos,ns,0.100533076,-0.000523316,0.000121615,-4.303050722,0.0000226,neg,ns,0.825628279,Rgl2,Rgl2_Exon,17,33932673,33932722,33932673,33932674,50,+,CGATCCCCCTGCTGACCCCACGGATGTCCTGGTGTTCCTCGCTGACCACT,"Exon (Rgl2-201/Rgl2, exon 6 of 18)",17,33929582,33937687,8106,1,Rgl2-201,3091,Rgl2-202;Rgl2-201;Rgl2-205;Rgl2-203;Rgl2-213;Rgl2-210;Rgl2-214;Rgl2-212;Rgl2-207;Rgl2-204;Rgl2-209;Rgl2-208;Rgl2-206;Rgl2-211;Tapbp-201;Tapbp-206;Tapbp-207;Tapbp-204,Rgl2;Rgl2;Rgl2;Rgl2;Rgl2;Rgl2;Rgl2;Rgl2;Rgl2;Rgl2;Rgl2;Rgl2;Rgl2;Rgl2;Tapbp;Tapbp;Tapbp;Tapbp,3130;0;2769;2699;0;1790;0;1765;1738;0;0;0;0;0;13341;13036;12146;6555,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,19732,ENSMUSG00000041354,mapped to different genes,17,33932533,33932751,219,*,219,13,0.657534247,0.550890093,0.059360731,0.000000192,CpGisland,TRUE,NA,NRS
10410,cg14576207,0.0000169,0.00000426,3.979227913,0.0000861,gain,ns,-0.0000306,0.00000723,-4.232237357,0.0000305,neg,ns,0.003161293,0.002118153,1.49247642,0.136591275,pos,ns,0.864577041,-0.0000728,0.0000728,-0.998840516,0.318650972,neg,ns,0.911340462,Aff4,Aff4_Exon,11,53380569,53380618,53380617,53380618,50,+,TAATAATTACATTTCAGGAGATGACGCATTCATGGCCTCCCCCTCTAACG,"Exon (Aff4-201/Aff4, exon 5 of 21)",11,53350833,53421830,70998,1,Aff4-201,29736,Aff4-201;Aff4-205;Aff4-204;Aff4-206;Aff4-203,Aff4;Aff4;Aff4;Aff4;Aff4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,93736,ENSMUSG00000049470,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15055,cg17870945,-0.0000269,0.0000202,-1.330752132,0.18424856,loss,ns,0.000145146,0.0000343,4.231634122,0.0000306,pos,ns,0.026230171,0.010048821,2.610273529,0.009486375,pos,ns,2.022899733,-0.00034003,0.000345578,-0.983944193,0.32591026,neg,ns,0.65164026,Elfn2,Elfn2_Exon,15,78673115,78673164,78673115,78673116,50,-,CGATAACCATGCCAAAGAGGCAGCCCAGGATGGTCATGATGTAGTGGGTG,"Exon (Elfn2-202/Elfn2, exon 2 of 2)",15,78667331,78718113,50783,2,Elfn2-202,44949,Elfn2-202;Elfn2-201;Elfn2-204;Elfn2-203,Elfn2;Elfn2;Elfn2;Elfn2,0;0;2062;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,4,207393,ENSMUSG00000043460,conserved gene and region,15,78672914,78673116,203,*,203,14,0.581280788,0.824963716,0.068965517,8.36E-09,CpGisland,TRUE,U13,Hc-P
807,cg13362034,0.0000651,0.0000106,6.157759141,2.28E-09,gain,yes,-0.000076,0.000018,-4.22923606,0.0000309,neg,ns,-0.015094039,0.005265625,-2.866523921,0.004434093,neg,ns,2.3531952,0.000385497,0.000181084,2.128827017,0.034056688,pos,ns,0.735389872,Hnrnpul2,Hnrnpul2_Exon,19,8822899,8822948,8822899,8822900,50,+,CGAGCTTACTATGAATTCCGAGAGGAGGCTTACCACAGCCGGTGAGGGAA,"Exon (Hnrnpul2-201/Hnrnpul2, exon 2 of 14)",19,8820010,8834143,14134,1,Hnrnpul2-201,2889,Hnrnpul2-201;Hnrnpul2-202;Ttc9c-202;Ttc9c-204;Ttc9c-201;Ttc9c-203,Hnrnpul2;Hnrnpul2;Ttc9c;Ttc9c;Ttc9c;Ttc9c,0;0;-3566;-3975;-3605;-3667,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,68693,ENSMUSG00000071659,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U4,Pr-F
18413,cg08695452,0.0000628,0.0000078,8.055303188,1.73E-14,gain,yes,-0.000056,0.0000133,-4.228809808,0.000031,neg,ns,0.014729407,0.003882362,3.793929164,0.000178285,pos,ns,3.748885324,-0.000419382,0.000133514,-3.141104894,0.001845522,neg,ns,0.756876348,Mmp15,Mmp15_Exon,8,95368195,95368244,95368195,95368196,50,-,CGCAGATGAGCCCTGGACCTTCTCCAGCACTGACCTGCATGGTGAGGACA,"Exon (Mmp15-201/Mmp15, exon 4 of 10)",8,95352268,95375080,22813,1,Mmp15-201,15927,Mmp15-201;Mmp15-202,Mmp15;Mmp15,0;-1627,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,17388,ENSMUSG00000031790,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17050,cg06792724,-0.00001,0.0000172,-0.58301401,0.560307733,loss,ns,0.000123776,0.0000293,4.226843899,0.0000312,pos,ns,0.019301546,0.008579037,2.249850027,0.025159668,pos,ns,1.599295095,-0.0000679,0.000295032,-0.23020762,0.818082276,neg,ns,0.446262899,Il1rapl1,Il1rapl1_fiveUTR,X,88115557,88115606,88115557,88115558,50,-,CGGGATGCAGCCATAAGAAAGAATCCTATGTATATTTCACAAGTATCCCG,Promoter (<=1kb),20,86740870,88115645,1374776,2,Il1rapl1-203,39,Il1rapl1-203;Il1rapl1-202,Il1rapl1;Il1rapl1,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,18,331461,ENSMUSG00000052372,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9564,cg17548032,0.000146096,0.00000807,18.11384816,1.59E-50,gain,yes,-0.0000579,0.0000137,-4.22644133,0.0000313,neg,ns,0.00521006,0.004014249,1.297891742,0.195289401,pos,ns,0.709321326,0.000194769,0.00013805,1.410861695,0.159288119,pos,ns,0.271938994,Foxg1,Foxg1_Promoter,12,49381698,49381747,49381746,49381747,50,-,CATATCAGAGTACAAATAGTATAGTTACTCCACATCAGTAAATGTTTACG,Promoter (<=1kb),12,49382660,49384364,1705,1,Foxg1-202,-962,Foxg1-202;Foxg1-203;Foxg1-204;Foxg1-201;Gm43517-201,Foxg1;Foxg1;Foxg1;Foxg1;Gm43517,0;-1053;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,11,27,15228,ENSMUSG00000020950,mapped to different genes,12,49381746,49381860,115,*,115,11,0.556521739,1.280364373,0.095652174,1.73E-08,CpGisland,TRUE,U13,Hc-P
18241,cg09645993,0.000174843,0.0000105,16.62064983,8.44E-45,gain,yes,-0.0000754,0.0000179,-4.220189781,0.0000321,neg,ns,-0.008755923,0.005235724,-1.672342527,0.095465714,neg,ns,1.020152573,0.000162101,0.000180056,0.900281817,0.368669128,pos,ns,0.81988207,Ap3b1,Ap3b1_Intergenic_downstream,13,94576089,94576138,94576089,94576090,50,-,CGGTCCCATTGTTTGCCCTTGATGAGCATGTCATTAATGGAAATAGAAGA,Distal Intergenic,13,94542303,94547867,5565,1,Ap3b1-202,33835,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,33,55,11774,ENSMUSG00000021686,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5427,cg22745440,0.0000711,0.0000201,3.532495161,0.000474256,gain,ns,-0.000144353,0.0000342,-4.220366548,0.0000321,neg,ns,0.019767519,0.010020561,1.972695814,0.049418525,pos,ns,1.306110219,-0.001788483,0.000344606,-5.189931046,0.000000381,neg,yes,0.495854854,Rgl2,Rgl2_Exon,17,33932485,33932534,33932533,33932534,50,-,GCCTCTCACCCTGAGGATTTTGGCTCTGAGGCCAAGGGTCAGCTTGACCG,"Exon (Rgl2-201/Rgl2, exon 6 of 18)",17,33929582,33937687,8106,1,Rgl2-201,2903,Rgl2-202;Rgl2-201;Rgl2-205;Rgl2-203;Rgl2-213;Rgl2-210;Rgl2-214;Rgl2-212;Rgl2-207;Rgl2-204;Rgl2-209;Rgl2-208;Rgl2-206;Rgl2-211;Tapbp-201;Tapbp-206;Tapbp-207;Tapbp-204,Rgl2;Rgl2;Rgl2;Rgl2;Rgl2;Rgl2;Rgl2;Rgl2;Rgl2;Rgl2;Rgl2;Rgl2;Rgl2;Rgl2;Tapbp;Tapbp;Tapbp;Tapbp,2942;0;2581;2511;0;1602;0;1577;1550;0;0;0;0;0;13153;12848;11958;6367,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,Exon,4,4,19732,ENSMUSG00000041354,mapped to different genes,17,33932533,33932751,219,*,219,13,0.657534247,0.550890093,0.059360731,0.000000192,CpGisland,TRUE,NA,NRS
7565,cg08530886,0.000000733,0.00000172,0.425425943,0.670821374,gain,ns,0.0000123,0.00000293,4.219454136,0.0000322,pos,ns,0.003213916,0.000857046,3.749991441,0.000210974,pos,ns,3.675770242,-0.0000593,0.0000295,-2.012108108,0.045073309,neg,ns,0.965527469,Zbtb20,Zbtb20_Intron,16,43254423,43254472,43254471,43254472,50,+,TCATTTTACATTATAAATAAATAACAAACCAATTTGGCACATGCCCACCG,"Intron (Zbtb20-209/Zbtb20, intron 5 of 7)",16,42875881,43463175,587295,1,Zbtb20-209,378542,Zbtb20-209;Zbtb20-211;Zbtb20-217;Zbtb20-218;Zbtb20-204;Zbtb20-215;Zbtb20-212;Zbtb20-201;Zbtb20-203,Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,98,56490,ENSMUSG00000022708,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23684,cg05659128,-0.00000298,0.00000401,-0.742894483,0.45810815,loss,ns,-0.0000287,0.00000681,-4.217672245,0.0000324,neg,ns,0.005245852,0.001995726,2.628542986,0.009002277,pos,ns,2.045647615,-0.000248304,0.0000686,-3.617860642,0.000346704,neg,ns,0.900837367,Ptpn4,Ptpn4_Exon,1,119802402,119802451,119802450,119802451,50,+,AACTCTGATGCTCGTACATTGTAGGTTCTGCCAGCAGGCAATCGGAAACG,Promoter (<=1kb),1,119743405,119802422,59018,2,Ptpn4-210,0,Ptpn4-201;Ptpn4-203;Ptpn4-210;Ptpn4-207;Ptpn4-209;Ptpn4-205;Ptpn4-204,Ptpn4;Ptpn4;Ptpn4;Ptpn4;Ptpn4;Ptpn4;Ptpn4,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,5,19258,ENSMUSG00000026384,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22133,cg23623568,-0.00000286,0.00000394,-0.725242595,0.46885031,loss,ns,0.0000282,0.00000669,4.218020056,0.0000324,pos,ns,0.004905771,0.001960759,2.501975679,0.012865249,pos,ns,1.89058182,-0.0000904,0.0000674,-1.340074451,0.181202531,neg,ns,0.934799703,Osbpl8,Osbpl8_Exon,10,111275019,111275068,111275019,111275020,50,+,CGTTTGAAGAAAGTAGTGAAATGGTATTTGTCAGGATTCTATAAAAAGCC,"Exon (Osbpl8-202/Osbpl8, exon 13 of 24)",10,111164752,111297249,132498,1,Osbpl8-202,110267,Osbpl8-202;Osbpl8-201;Osbpl8-205,Osbpl8;Osbpl8;Osbpl8,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,237542,ENSMUSG00000020189,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27117,cg08587172,0.00000548,0.0000234,0.234346521,0.814870672,gain,ns,-0.0001675,0.0000397,-4.216387163,0.0000326,neg,ns,-0.037415259,0.011638369,-3.214819951,0.001442869,neg,ns,2.840773173,0.001150656,0.000400243,2.874896252,0.004321214,pos,ns,0.505639141,Slc32a1,Slc32a1_Exon,2,158602834,158602883,158602882,158602883,50,-,GGCTTGTCCCAGTCCAATAGTTCCCTTAATTGCCTTTTTATAGCACGTCG,Promoter (7-8kb),2,158610767,158615748,4982,1,Slc32a1-201,-7933,NA,NA,NA,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,22348,ENSMUSG00000037771,conserved gene but different region,2,158602879,158602992,114,*,114,10,0.614035088,0.981912145,0.087719298,0.000000223,CpGisland,TRUE,U11,Tr-P
22808,cg07547913,0.0000277,0.0000143,1.933563655,0.054077014,gain,ns,0.000102683,0.0000244,4.215786097,0.0000327,pos,ns,0.011505259,0.007135719,1.612347509,0.10790389,pos,ns,0.966962898,0.0000639,0.000245397,0.260432752,0.794702884,pos,ns,0.324339059,Faah,Faah_Intron,4,115971650,115971699,115971650,115971651,50,-,CGAGTTTGCATTTTAAATGCGAATTTGACAAGACGGGCAATTTGTCTGCT,"Intron (Faah-202/Faah, intron 13 of 14)",4,115967145,116017675,50531,2,Faah-202,45976,Faah-202,Faah,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,20,14073,ENSMUSG00000034171,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
19196,cg14346040,0.00000683,0.00000736,0.92838613,0.353929601,gain,ns,-0.0000527,0.0000125,-4.215030978,0.0000328,neg,ns,0.009765475,0.003660713,2.667642887,0.00803997,pos,ns,2.094745545,-0.000654783,0.000125892,-5.201167658,0.000000361,neg,yes,0.755207888,Nr1d1,Nr1d1_Exon,11,98769178,98769227,98769226,98769227,50,+,GCAGGCTGTAGGTGGTGCGGCTTAGGAACATCACTGTCTGGTCCTTCACG,"Exon (Nr1d1-201/Nr1d1, exon 7 of 8)",11,98767932,98775333,7402,2,Nr1d1-201,6106,Nr1d1-201;Nr1d1-202;Thra-201;Thra-202;Thra-203,Nr1d1;Nr1d1;Thra;Thra;Thra,0;1199;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,9,217166,ENSMUSG00000020889,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20491,cg08638594,0.0000278,0.00000588,4.723176045,0.00000352,gain,ns,0.0000421,0.00000999,4.214050561,0.0000329,pos,ns,0.007829058,0.002927214,2.67457684,0.007879318,pos,ns,2.103511357,-0.0000693,0.000100667,-0.6888113,0.491457206,neg,ns,0.539080036,Mier1,Mier1_fiveUTR,4,103115574,103115623,103115574,103115575,50,+,CGATTCTCCCAGTGCCTGGCTGAGTTTCGGACGTGGTTAAGAACCAACTG,5' UTR,4,103114390,103115904,1515,1,Mier1-209,1184,Mier1-209;Mier1-205;Mier1-210;Mier1-214;Mier1-211;Mier1-212;Mier1-208;Mier1-201;Mier1-202;Mier1-213;Mier1-204;Mier1-215;Mier1-206;Wdr78-201;Wdr78-202;Wdr78-204;Wdr78-203,Mier1;Mier1;Mier1;Mier1;Mier1;Mier1;Mier1;Mier1;Mier1;Mier1;Mier1;Mier1;Mier1;Wdr78;Wdr78;Wdr78;Wdr78,0;0;0;0;0;0;0;0;0;-1672;0;0;0;-1275;-1275;-1350;-1019,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,4,71148,ENSMUSG00000028522,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U4,Pr-F
13938,cg08675781,-0.00000454,0.00000297,-1.531261093,0.126724688,loss,ns,0.0000212,0.00000504,4.213526195,0.000033,pos,ns,0.001100144,0.001475934,0.745388043,0.456601942,pos,ns,0.340462246,0.00000736,0.0000508,0.144997059,0.884807419,pos,ns,0.950629505,Atp2b3,Atp2b3_Exon,X,73559915,73559964,73559915,73559916,50,+,CGCCGGCGGTCTTCGGTCCTCAGCCAGCTTCATGACGTAACCAATCTTTC,"Exon (Atp2b3-203/Atp2b3, exon 21 of 22)",20,73503086,73571005,67920,1,Atp2b3-202,56829,Atp2b3-201;Atp2b3-202;Atp2b3-203,Atp2b3;Atp2b3;Atp2b3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,3,320707,ENSMUSG00000031376,conserved gene and region,X,73559893,73560008,116,*,116,9,0.612068966,0.892307692,0.077586207,0.00000318,CpGisland,TRUE,NA,NRS
12067,cg01710150,0.000011,0.00000764,1.440780772,0.150655877,gain,ns,-0.0000547,0.000013,-4.213334178,0.000033,neg,ns,0.022142491,0.003804145,5.820621751,1.46E-08,pos,ns,7.83471638,-0.000758701,0.000130824,-5.799390297,1.64E-08,neg,yes,0.149555311,Nrp2,Nrp2_Intron,1,62704529,62704578,62704529,62704530,50,+,CGGTGTTCATATGTCACATATGGACTGAATCAAAGGTTTAAAAATACTAC,"Intron (Nrp2-207/Nrp2, intron 1 of 2)",1,62703285,62739932,36648,1,Nrp2-207,1244,Nrp2-207;Nrp2-203;Nrp2-204;Nrp2-201;Nrp2-205;Nrp2-202;Nrp2-206,Nrp2;Nrp2;Nrp2;Nrp2;Nrp2;Nrp2;Nrp2,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,6,18187,ENSMUSG00000025969,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
14479,cg02990488,-0.0000208,0.00000584,-3.56661077,0.000418749,loss,ns,-0.0000418,0.00000992,-4.212511087,0.0000331,neg,ns,0.011291635,0.002907541,3.883567948,0.000125842,pos,ns,3.900173336,-0.000327842,0.0001,-3.278748524,0.001161245,neg,ns,0.877417086,Smarcb1,Smarcb1_Exon,10,75916729,75916778,75916729,75916730,50,-,CGAGTGGTTTTGAAACAGGTTTACAAACCCTCGTGAAGACGCACCCTTAG,"Exon (Smarcb1-201/Smarcb1, exon 2 of 9)",10,75896769,75921617,24849,2,Smarcb1-201,4839,Smarcb1-201;Smarcb1-203;Smarcb1-205;Smarcb1-202;Smarcb1-204;Smarcb1-206,Smarcb1;Smarcb1;Smarcb1;Smarcb1;Smarcb1;Smarcb1,0;-2567;-157;0;0;-1565,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,20587,ENSMUSG00000000902,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2842,cg23407421,-0.0000054,0.00000833,-0.648103357,0.517397837,loss,ns,0.0000596,0.0000141,4.21249187,0.0000331,pos,ns,0.007133458,0.004144748,1.72108376,0.086233348,pos,ns,1.064324752,0.0000809,0.000142538,0.567909808,0.570507299,pos,ns,0.869284043,Zfp503,Zfp503_Intergenic_downstream,14,21967645,21967694,21967645,21967646,50,-,CGATGTTGATTTTATCTCCCGAGATTAGCATGATTTACTTCGGATGGATA,Distal Intergenic,14,21983959,21989601,5643,2,Zfp503-201,21956,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,27,218820,ENSMUSG00000039081,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12775,cg14792969,-0.0000278,0.0000178,-1.567184837,0.118091659,loss,ns,0.000127106,0.0000302,4.212058378,0.0000332,pos,ns,0.028905841,0.008840763,3.269609344,0.001198109,pos,ns,2.921503561,-0.000408962,0.000304033,-1.34512301,0.179568693,neg,ns,0.839570018,Rsrc1,Rsrc1_Intron,3,67147384,67147433,67147384,67147385,50,+,CGGCCTTATTGAATGGAATAACAGTGTAATGTACCATTGAAGGCAGGATT,"Intron (Rsrc1-206/Rsrc1, intron 4 of 9)",3,66981390,67356559,375170,1,Rsrc1-206,165994,Rsrc1-206;Rsrc1-203;Rsrc1-202;Rsrc1-201;Rsrc1-209;Rsrc1-205,Rsrc1;Rsrc1;Rsrc1;Rsrc1;Rsrc1;Rsrc1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,37,66880,ENSMUSG00000034544,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21001,cg01432400,-0.0000381,0.0000169,-2.256111507,0.024760232,loss,ns,0.000120725,0.0000287,4.210414331,0.0000334,pos,ns,0.017443833,0.008400186,2.076600885,0.038661954,pos,ns,1.412716197,-0.000316688,0.000288882,-1.096254925,0.273818116,neg,ns,0.607850848,Vrk1,Vrk1_Intergenic_upstream,12,105960104,105960153,105960104,105960105,50,+,CGCAGTTAACAATTAGCAATTAAACCTGCAGTGTCTACAAAGAGCACGGA,Distal Intergenic,12,106010228,106075220,64993,1,Vrk1-202,-50075,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,37,22367,ENSMUSG00000021115,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23613,cg05341636,0.000031,0.0000121,2.568807251,0.010672708,gain,ns,0.0000864,0.0000205,4.208857615,0.0000337,pos,ns,0.023847067,0.006013938,3.965299885,0.0000911,pos,ns,4.040590998,-0.000436424,0.000206819,-2.110175611,0.035644181,neg,ns,0.17622592,Dll4,Dll4_Promoter,2,119322613,119322662,119322613,119322614,50,-,CGCCGGCCTCATTTCAATGTGAATGGATCGAATGGAGCAGCCATGTGGCA,Promoter (3-4kb),2,119325784,119335962,10179,1,Dll4-201,-3171,Dll4-201,Dll4,0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,8,20,54485,ENSMUSG00000027314,conserved gene and region,2,119322514,119322642,129,*,129,12,0.705426357,0.752186589,0.093023256,4.32E-09,CpGisland,TRUE,U3,Pr-B
21465,cg25729109,0.00000949,0.00000534,1.777935945,0.076394552,gain,ns,0.0000382,0.00000907,4.208526242,0.0000337,pos,ns,0.002134947,0.002655928,0.803842434,0.422103941,pos,ns,0.374580593,0.0000236,0.0000913,0.258921322,0.795867787,pos,ns,0.89411134,Bcl11b,Bcl11b_Exon,12,107915453,107915502,107915453,107915454,50,+,CGTGCCACTTTTTCATGTGTTTCTCCAGGGTGCTGTAGACGCTGAAGGGC,"Exon (Bcl11b-201/Bcl11b, exon 4 of 4)",12,107910403,108003602,93200,2,Bcl11b-201,88100,Bcl11b-201;Bcl11b-202;Bcl11b-203,Bcl11b;Bcl11b;Bcl11b,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,11,39,58208,ENSMUSG00000048251,conserved gene and region,12,107915259,107916962,1704,*,1704,150,0.66314554,0.800892387,0.088028169,2.06E-104,CpGisland,TRUE,U15,NS
7152,cg08579332,-0.00020433,0.0000161,-12.71739059,4.21E-30,loss,yes,0.00011485,0.0000273,4.207645807,0.0000338,pos,ns,0.037225585,0.007996705,4.655115197,0.00000481,pos,ns,5.318121024,-0.001300865,0.000275006,-4.730315803,0.00000341,neg,ns,0.335132451,Immp2l,Immp2l_fiveUTR,12,41485926,41485975,41485926,41485927,50,+,CGTTCACCCGATCAGTTGTCACACTGACATGGTGCTGCCTGCTCAGCGGT,5' UTR,12,41024090,41955588,931499,1,Immp2l-202,461836,Immp2l-202;Immp2l-203;Lrrn3-201,Immp2l;Immp2l;Lrrn3,0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,4,93757,ENSMUSG00000056899,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24830,cg02164420,0.000026,0.00000439,5.927793278,8.18E-09,gain,yes,-0.0000314,0.00000746,-4.206803162,0.0000339,neg,ns,0.009211077,0.002186717,4.21228606,0.0000332,pos,ns,4.479148579,-0.000346813,0.0000752,-4.611817729,0.00000585,neg,ns,0.906831351,Phc2,Phc2_threeUTR,4,128745828,128745877,128745876,128745877,50,+,GAGCTCTGTGGCCGGGTGGACTTTGCCTATAAGTTCAAGCGTTCCAAGCG,3' UTR,4,128654702,128752881,98180,1,Phc2-201,91126,Phc2-201;Phc2-203;Phc2-209;Phc2-202;Phc2-208;Phc2-205;Phc2-210;Phc2-204;Phc2-206,Phc2;Phc2;Phc2;Phc2;Phc2;Phc2;Phc2;Phc2;Phc2,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,13,54383,ENSMUSG00000028796,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
861,cg07131970,0.0000283,0.00000634,4.457963344,0.0000116,gain,ns,-0.0000453,0.0000108,-4.205562896,0.0000341,neg,ns,-0.007099199,0.003155006,-2.250138028,0.025141173,neg,ns,1.599614457,-0.000212954,0.0001085,-1.962705841,0.050574399,neg,ns,0.800383025,Larp4b,Larp4b_Exon,13,9143792,9143841,9143792,9143793,50,-,CGAGAAGTACTTAAAAAAACATTGGAATTCTGCTTATCTAGGTAAGGCTG,"Exon (Larp4b-202/Larp4b, exon 6 of 18)",13,9093881,9173988,80108,1,Larp4b-202,49911,Gm28155-201;Larp4b-202;Larp4b-204;Larp4b-201;Larp4b-203,Gm28155;Larp4b;Larp4b;Larp4b;Larp4b,-2911;0;0;0;7577,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,Exon,1,1,217980,ENSMUSG00000033499,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27458,cg05112916,0.00000305,0.00000381,0.799537154,0.424591216,gain,ns,0.0000272,0.00000647,4.204222728,0.0000343,pos,ns,0.009439348,0.001896706,4.976706527,0.00000107,pos,ns,5.968786169,-0.000215269,0.0000652,-3.300283605,0.001078506,neg,ns,0.904452562,Pbx1,Pbx1_Intron,1,168275925,168275974,168275925,168275926,50,+,CGGCAGCTTATGATTATCCAGCGCTACAGACTATACAATTCCAGCTTCAT,"Intron (Pbx1-208/Pbx1, intron 2 of 7)",1,168119364,168432270,312907,2,Pbx1-208,156296,Pbx1-208;Pbx1-205;Pbx1-206;Pbx1-201;Pbx1-202;Pbx1-204,Pbx1;Pbx1;Pbx1;Pbx1;Pbx1;Pbx1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,84,18514,ENSMUSG00000052534,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23375,cg11421980,-0.0000188,0.00000609,-3.081327583,0.002245668,loss,ns,0.0000435,0.0000104,4.203496607,0.0000344,pos,ns,-0.001131166,0.003032444,-0.373021276,0.709387538,neg,ns,0.149116445,0.000156748,0.000104286,1.503063246,0.133840742,pos,ns,0.889111567,Sox21,Sox21_Intergenic_downstream,14,118194840,118194889,118194888,118194889,50,+,CAATTTAATGACATTACAGCTCTCAGCTTAGGCTGGCGTGCTGCGAGGCG,Distal Intergenic,14,118233232,118237030,3799,2,Sox21-201,42141,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,26,27,223227,ENSMUSG00000061517,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17844,cg08535442,-0.00000744,0.00000289,-2.569847145,0.010641406,loss,ns,-0.0000206,0.00000492,-4.198995352,0.0000351,neg,ns,-0.004310176,0.001440657,-2.991812409,0.002995899,neg,ns,2.523472842,0.00000766,0.0000495,0.154664817,0.877186215,pos,ns,0.898492674,G3bp2,G3bp2_Exon,5,92066491,92066540,92066539,92066540,50,+,CCTTCATCAAGTTCAGGCTCAGAATCACCAAACACTTCATCTTCATAACG,"Exon (G3bp2-203/G3bp2, exon 5 of 11)",5,92052146,92083557,31412,2,G3bp2-203,17017,G3bp2-203;G3bp2-201;G3bp2-202;G3bp2-204;G3bp2-209;G3bp2-210;G3bp2-206;G3bp2-207;G3bp2-205;G3bp2-208,G3bp2;G3bp2;G3bp2;G3bp2;G3bp2;G3bp2;G3bp2;G3bp2;G3bp2;G3bp2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,5,23881,ENSMUSG00000029405,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
299,cg24276148,-0.0000196,0.00000463,-4.23091125,0.0000307,loss,ns,-0.000033,0.00000786,-4.197573032,0.0000353,neg,ns,0.00566114,0.002304162,2.45691981,0.01456106,pos,ns,1.836807014,-0.000292484,0.0000792,-3.691119688,0.000263705,neg,ns,0.820804808,U2af2,U2af2_fiveUTR,7,5068711,5068760,5068759,5068760,50,-,TTGTTTCCATTTCTCTTTAAAGTGAAATATTGTGGGGCTGAGATCCCTCG,5' UTR,7,5062143,5079938,17796,1,U2af2-201,6568,U2af2-201;U2af2-209;U2af2-203;U2af2-207;U2af2-208;U2af2-205;U2af2-204;U2af2-202;U2af2-206,U2af2;U2af2;U2af2;U2af2;U2af2;U2af2;U2af2;U2af2;U2af2,0;0;6436;6428;6419;6407;0;0;0,TRUE,FALSE,FALSE,TRUE,TRUE,TRUE,TRUE,TRUE,FALSE,fiveUTR,3,4,22185,ENSMUSG00000030435,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26855,cg22167768,0.000049,0.0000177,2.773994804,0.005872982,gain,ns,-0.000125932,0.00003,-4.197747968,0.0000353,neg,ns,-0.025667283,0.00878896,-2.920400481,0.003752216,neg,ns,2.425712187,0.000138265,0.000302252,0.457450004,0.647668059,pos,ns,0.351084715,Nol4l,Nol4l_Exon,2,153483759,153483808,153483759,153483760,50,-,CGAGTAGATGATGTCAAAGAAATCTTCCACCACAGCGACCCGCTTCAGAG,"Exon (Nol4l-201/Nol4l, exon 2 of 11)",2,153407462,153529971,122510,2,Nol4l-201,46163,Nol4l-201;Nol4l-205;Nol4l-203;Nol4l-206,Nol4l;Nol4l;Nol4l;Nol4l,0;0;0;-4033,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,14,329540,ENSMUSG00000061411,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15854,cg13463879,-0.00000354,0.00000873,-0.405815599,0.685158055,loss,ns,0.0000623,0.0000148,4.195715502,0.0000356,pos,ns,0.014266039,0.004347228,3.281640466,0.001149801,pos,ns,2.939377132,-0.000327203,0.000149501,-2.188636885,0.029369063,neg,ns,0.81184314,Mef2c,Mef2c_threeUTR,13,83662906,83662955,83662954,83662955,50,-,CTTTGCAAAATGTATGTTACAATAGATAGTGTCATGTTGCAGGTTCAACG,3' UTR,13,83504034,83663343,159310,1,Mef2c-218,158872,Mef2c-218;Mef2c-228;Mef2c-201;Mef2c-202;Mef2c-222;Mef2c-223;Mef2c-227;Mef2c-213;Mef2c-214;Mef2c-212;Mef2c-203;Mef2c-219;Mef2c-225;Mef2c-230;Mef2c-211,Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,threeUTR,10,41,17260,ENSMUSG00000005583,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4932,cg12787746,0.0000226,0.0000051,4.431877308,0.000013,gain,ns,-0.0000364,0.00000867,-4.193441439,0.0000359,neg,ns,0.006130586,0.002540597,2.413049099,0.016399616,pos,ns,1.78516632,-0.000272719,0.0000874,-3.121389699,0.001969573,neg,ns,0.891356654,Marchf6,Marchf6_Exon,15,31471716,31471765,31471764,31471765,50,-,ATAGAGACCACAAGCAGCTGTGTAGAGCTCATGGATTTTGGCAGTCCCCG,"Exon (Marchf6-201/Marchf6, exon 21 of 26)",15,31455891,31531053,75163,2,Marchf6-201,59288,Marchf6-201;Marchf6-203,Marchf6;Marchf6,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,7,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4117,cg02894327,-0.00000705,0.00000327,-2.15834467,0.031668482,loss,ns,0.0000233,0.00000555,4.192417686,0.0000361,pos,ns,0.004810517,0.001625296,2.959778408,0.00331598,pos,ns,2.479388066,-0.000137562,0.0000559,-2.461135442,0.014394392,neg,ns,0.914085427,Gm12072,Gm12072_Promoter,11,26824640,26824689,26824688,26824689,50,+,TTCGATTTAACCATCTGATTTAATTGACAGAATAAATGCACCTGTCAACG,Promoter (8-9kb),11,26832804,26845457,12654,1,Gm12072-201,-8115,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,7,666270,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9438,cg05847200,0.00000951,0.00000763,1.246218933,0.213624956,gain,ns,0.0000543,0.000013,4.192242558,0.0000361,pos,ns,0.000185934,0.003796183,0.048979297,0.960967335,pos,ns,0.017291374,0.000166787,0.00013055,1.277566847,0.202358118,pos,ns,0.517332504,Gm48909,Gm48909_Intron,14,48738291,48738340,48738339,48738340,50,-,CCTACACAGTGGAACAAAGCCCAGCAAAGCCTTTGAACACTGTTCAGCCG,"Intron (Otx2os1-206/Otx2os1-206, intron 2 of 4)",14,48695601,48695981,381,2,Gm48909-201,-42359,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,8,105245868,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18284,cg12983763,-0.00000649,0.0000173,-0.375135284,0.707816384,loss,ns,0.000123263,0.0000294,4.191108331,0.0000362,pos,ns,0.011221895,0.008616299,1.302403159,0.193745366,pos,ns,0.712768677,-0.000355951,0.000296314,-1.201264727,0.230565505,neg,ns,0.598134992,Gm48316,Gm48316_Intergenic_upstream,13,94680629,94680678,94680677,94680678,50,+,TGGACATTCAAATGTGTCGGCTTTGATTAGCACCATTGCTTTTCAAGTCG,Distal Intergenic,13,94752270,94752593,324,1,Gm48316-201,-71592,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,36,42,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23049,cg25000361,0.0000122,0.00000867,1.406446365,0.160593251,gain,ns,-0.0000617,0.0000147,-4.186317012,0.000037,neg,ns,0.029285362,0.004317582,6.78281624,5.98E-11,pos,yes,10.22362929,-0.000595555,0.000148481,-4.010979558,0.0000758,neg,ns,0.731121099,Cxcl12,Cxcl12_Exon,6,117176090,117176139,117176090,117176091,50,-,CGCAGAGAAGAAAAAGTGGGGAAAAAAGAAAAGATAGGAAAAAAGAAGCG,"Exon (Cxcl12-204/Cxcl12, exon 3 of 3)",6,117168574,117181366,12793,1,Cxcl12-203,7516,Cxcl12-202;Cxcl12-203;Cxcl12-204;Cxcl12-201,Cxcl12;Cxcl12;Cxcl12;Cxcl12,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,20315,ENSMUSG00000061353,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11104,cg15831187,-0.0000078,0.0000131,-0.597671135,0.550495726,loss,ns,0.0000928,0.0000222,4.185378399,0.0000371,pos,ns,0.027905424,0.006496223,4.295638385,0.0000233,pos,ns,4.631937203,-0.000435533,0.000223405,-1.949527126,0.052133964,neg,ns,0.734194335,Lingo1,Lingo1_Exon,9,56619845,56619894,56619845,56619846,50,+,CGTTGTCCTGTACCTGGGCGTAGCGCACCTCCAGCGTGCCATCAGGGAAG,"Exon (Lingo1-201/Lingo1, exon 4 of 4)",9,56618475,56685253,66779,2,Lingo1-201,65359,Lingo1-201;Lingo1-206;Lingo1-203;Lingo1-202,Lingo1;Lingo1;Lingo1;Lingo1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,25,235402,ENSMUSG00000049556,conserved gene and region,9,56619454,56620252,799,*,799,46,0.600750939,0.647544883,0.057571965,3.48E-24,CpGisland,TRUE,NA,NRS
14349,cg18527971,-0.0000328,0.0000105,-3.11871996,0.00198695,loss,ns,0.0000747,0.0000179,4.184196635,0.0000373,pos,ns,-0.001120919,0.005231473,-0.214264546,0.830481632,neg,ns,0.080669969,0.0000748,0.00017991,0.415702126,0.677915593,pos,ns,0.281706083,Gm13653,Gm13653_Intron,2,75246418,75246467,75246466,75246467,50,+,AGAACATTGCATTTCATGTGGAATGTCAATTATTAAAATGCAGTGTCCCG,"Intron (2600014E21Rik-210/2600014E21Rik-210, intron 2 of 6)",2,75192277,75192759,483,1,Gm13653-201,54141,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,108168770,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2920,cg07549765,0.0000716,0.00000428,16.70645458,3.96E-45,gain,yes,-0.0000304,0.00000728,-4.1809906,0.0000378,neg,ns,-0.003843677,0.00213173,-1.80307835,0.072346866,neg,ns,1.140580277,0.000129249,0.0000733,1.763048468,0.078877537,pos,ns,0.896656271,Ehbp1,Ehbp1_Exon,11,22053471,22053520,22053471,22053472,50,+,CGGCACGGGTGTCAATTTGCTTTTGCTCATTCTCTAGTGCTGCCAATTCT,"Exon (Ehbp1-201/Ehbp1, exon 20 of 24)",11,22005828,22285838,280011,2,Ehbp1-201,232318,Ehbp1-201;Ehbp1-202;Ehbp1-207,Ehbp1;Ehbp1;Ehbp1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,11,45,216565,ENSMUSG00000042302,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12039,cg02323424,0.0000454,0.00000471,9.638263386,2.12E-19,gain,yes,-0.0000334,0.000008,-4.180867103,0.0000378,neg,ns,-0.004348706,0.002342301,-1.856595808,0.064317215,neg,ns,1.191672766,0.000148058,0.0000806,1.838056655,0.067010775,pos,ns,0.857396446,Fbxo38,Fbxo38_Exon,18,62515046,62515095,62515046,62515047,50,+,CGGCTGGTTGAAGGACGTTCCTCATCAGAACACCTGCTAGTTCTCCTTTG,"Exon (Fbxo38-201/Fbxo38, exon 15 of 22)",18,62504155,62548695,44541,2,Fbxo38-201,33600,Fbxo38-201;Fbxo38-203;Fbxo38-204,Fbxo38;Fbxo38;Fbxo38,0;0;5634,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,6,107035,ENSMUSG00000042211,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19589,cg05612157,0.00000651,0.00000874,0.745244414,0.456688623,gain,ns,0.0000621,0.0000148,4.180314313,0.0000379,pos,ns,0.018333799,0.00434885,4.215780693,0.0000327,pos,ns,4.485506159,-0.000395041,0.000149557,-2.641416911,0.008674586,neg,ns,0.41236882,Eda,Eda_Promoter,X,99976604,99976653,99976652,99976653,50,+,GGCTCCCCTTTGGAGTTGGAGCTGTAAACAGCTGTAATAACTGTTCCACG,Promoter (<=1kb),20,99975606,100311299,335694,1,Eda-211,998,Eda-211;Eda-208;Eda-209;Eda-202;Eda-203;Eda-206;Eda-205;Eda-207;Eda-204;Eda-201,Eda;Eda;Eda;Eda;Eda;Eda;Eda;Eda;Eda;Eda,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,2,9,13607,ENSMUSG00000059327,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
1665,cg05120647,0.0000211,0.00000741,2.851345147,0.00464561,gain,ns,0.0000526,0.0000126,4.179659617,0.000038,pos,ns,0.008545281,0.003686155,2.318209848,0.021088402,pos,ns,1.675956325,-0.0000788,0.000126767,-0.621903723,0.53446228,neg,ns,0.114821311,Gm26993,Gm26993_Intergenic_upstream,19,14124090,14124139,14124138,14124139,50,-,AGAACATCGGAAACAGGACAAAATAGCCTTCTTGAAGCTGAAATCCCTCG,Distal Intergenic,19,14017583,14018371,789,2,Gm26993-201,-105768,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,8,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
837,cg10118204,-0.0000794,0.0000113,-7.046976977,1.19E-11,loss,yes,-0.00008,0.0000191,-4.178944619,0.0000381,neg,ns,0.005149212,0.00560985,0.917887788,0.359391191,pos,ns,0.444432572,-0.001585965,0.000192922,-8.220748397,5.60E-15,neg,yes,0.433468552,Abcb4,Abcb4_Exon,5,8909167,8909216,8909167,8909168,50,-,CGTTTTTTGCAGGATTCATAGTGGGATTCATCAGAGGATGGAAGCTCACC,"Exon (Abcb4-201/Abcb4, exon 7 of 28)",5,8893717,8959226,65510,1,Abcb4-201,15450,Abcb4-201;Abcb4-202;Gm17936-201,Abcb4;Abcb4;Gm17936,0;0;-3755,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,18670,ENSMUSG00000042476,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8383,cg05152013,0.0000441,0.00000763,5.77895086,1.83E-08,gain,yes,-0.0000541,0.000013,-4.17753672,0.0000384,neg,ns,-0.004101447,0.003797385,-1.080071506,0.280949915,neg,ns,0.551371095,0.000057,0.000130592,0.436822983,0.662543837,pos,ns,0.581206747,Zeb2,Zeb2_Intron,2,45073182,45073231,45073230,45073231,50,+,GTGACAATTAGTTTCAGGTGAGCTGATTTCTATGCAGCTTGCCCAAGACG,"Intron (Zeb2-212/Zeb2, intron 3 of 10)",2,44983632,45117395,133764,2,Zeb2-212,44164,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21951,cg22779638,0.0000011,0.00000547,0.201853069,0.840163987,gain,ns,0.0000388,0.00000929,4.177288024,0.0000384,pos,ns,0.016610591,0.002721384,6.10372859,3.09E-09,pos,ns,8.509815699,-0.000283938,0.0000936,-3.033910179,0.002618311,neg,ns,0.872336465,Faf1,Faf1_Intron,4,109806381,109806430,109806429,109806430,50,+,TGGCAGTTACATATCAAACCTCACGGGGGTTTGACAGGCAACGAATATCG,"Intron (Faf1-201/Faf1, intron 8 of 18)",4,109676588,109963960,287373,1,Faf1-201,129793,Faf1-201,Faf1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,24,14084,ENSMUSG00000010517,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6740,cg13763783,-0.00000948,0.00000294,-3.225888519,0.001389971,loss,ns,0.0000209,0.00000499,4.176665301,0.0000385,pos,ns,0.003395163,0.001463173,2.320410891,0.020967503,pos,ns,1.678453286,-0.0000347,0.0000503,-0.690585064,0.490343069,neg,ns,0.047417084,Lgi1,Lgi1_Promoter,19,38264484,38264533,38264532,38264533,50,+,AATAAGACATAATGCCGTCCTATTTTTGGTAACAATTAAAGGGCCTCCCG,Promoter (<=1kb),19,38264536,38312214,47679,1,Lgi1-207,-3,Lgi1-207;Lgi1-201;Lgi1-209;Lgi1-206;Lgi1-205;Lgi1-204;Lgi1-208;Lgi1-203;Lgi1-202,Lgi1;Lgi1;Lgi1;Lgi1;Lgi1;Lgi1;Lgi1;Lgi1;Lgi1,0;0;0;0;0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,7,56839,ENSMUSG00000067242,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5102,cg21642467,-0.0000198,0.0000148,-1.338113841,0.181840013,loss,ns,0.000104972,0.0000251,4.174879182,0.0000388,pos,ns,0.035773814,0.007366278,4.856430067,0.0000019,pos,ns,5.721425017,-0.000981727,0.000253326,-3.875353266,0.00012996,neg,ns,0.318843422,Dnm1,Dnm1_Exon,2,32318519,32318568,32318567,32318568,50,-,ATTGTACAGTAGTCTGCACATTGGTTAGGCTGGGCTGGGTTAGACCCTCG,"Exon (Mir199b-201/Mir199b-201, exon 1 of 1)",2,32308471,32353263,44793,2,Dnm1-204,34695,Dnm1-204;Dnm1-209;Dnm1-202;Dnm1-201;Dnm1-203;Dnm1-205;Dnm1-214;Dnm1-206;Dnm1-216;Dnm1-217;Dnm1-213,Dnm1;Dnm1;Dnm1;Dnm1;Dnm1;Dnm1;Dnm1;Dnm1;Dnm1;Dnm1;Dnm1,0;0;0;0;0;0;0;0;0;0;-1188,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,16,13429,ENSMUSG00000026825,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
14715,cg03064443,0.000132496,0.0000208,6.366926019,6.94E-10,gain,yes,-0.000147557,0.0000354,-4.173742905,0.000039,neg,ns,0.098644476,0.010357389,9.524067622,4.97E-19,pos,yes,18.30339048,-0.001594597,0.00035619,-4.476819906,0.0000107,neg,ns,0.416574094,Zfp385b,Zfp385b_Exon,2,77450200,77450249,77450248,77450249,50,+,ATTAGCCTTTGCGCTGTCCTTGGAAGGAACCATTTTGGGTTTATTTTTCG,"Exon (Zfp385b-203/Zfp385b, exon 4 of 8)",2,77410634,77519618,108985,2,Zfp385b-203,69369,Zfp385b-203;Zfp385b-211;Zfp385b-201;Zfp385b-204;Zfp385b-209;Zfp385b-207,Zfp385b;Zfp385b;Zfp385b;Zfp385b;Zfp385b;Zfp385b,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,3,241494,ENSMUSG00000027016,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12805,cg23832187,-0.0000496,0.0000177,-2.804480012,0.00535789,loss,ns,0.000125282,0.0000301,4.166869063,0.0000401,pos,ns,-0.009778793,0.008808367,-1.110170943,0.267785761,neg,ns,0.57221252,0.000463013,0.000302919,1.528504007,0.127407143,pos,ns,0.247642537,Tmem33,Tmem33_Intergenic_upstream,5,67222098,67222147,67222146,67222147,50,-,GCATTGTTGGCCTGAAAGGATATCTATTTATCATCTTATAAGACAGCTCG,Distal Intergenic,5,67260565,67291461,30897,1,Tmem33-201,-38467,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,22,22,67878,ENSMUSG00000037720,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
24592,cg18508905,0.0000715,0.00000761,9.399264997,1.26E-18,gain,yes,-0.0000538,0.0000129,-4.16241431,0.0000408,neg,ns,-0.011088924,0.003786566,-2.928490677,0.003658529,neg,ns,2.436693472,0.000257219,0.00013022,1.975273146,0.049123959,pos,ns,0.82722763,Sfpq,Sfpq_Exon,4,127035428,127035477,127035428,127035429,50,-,CGTTGTCACATACCTTCACATAAGGGATAGTATATTTTGGGTTGCAGTCA,"Exon (Gm12940-201/Gm12940-201, exon 1 of 3)",4,127023527,127037013,13487,1,Sfpq-206,11901,Sfpq-201;Sfpq-206,Sfpq;Sfpq,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,12,71514,ENSMUSG00000028820,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22730,cg23282125,0.0000427,0.00000503,8.493621912,8.48E-16,gain,yes,-0.0000355,0.00000854,-4.159526022,0.0000413,neg,ns,-0.007627748,0.002501935,-3.048739403,0.002496074,neg,ns,2.602742465,0.000348744,0.000086,4.053216981,0.0000639,pos,ns,0.862465261,Mknk1,Mknk1_Intron,4,115863982,115864031,115864030,115864031,50,+,CAGAGAGTGCTCACCGGGGAAGGCCACAAGTGCTACAGTGGCCAGGAACG,"Intron (Mknk1-201/Mknk1, intron 5 of 12)",4,115839198,115879250,40053,1,Mknk1-201,24784,Mknk1-201;Mknk1-207;Mknk1-208;Mknk1-212;Mknk1-202;Mknk1-203;Mknk1-210;Mknk1-206;Mknk1-211;Mknk1-209;Mknk1-213,Mknk1;Mknk1;Mknk1;Mknk1;Mknk1;Mknk1;Mknk1;Mknk1;Mknk1;Mknk1;Mknk1,0;0;0;0;0;0;0;24722;0;0;-2236,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,3,17346,ENSMUSG00000028708,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26643,cg03836368,0.0000281,0.00000588,4.785511751,0.00000264,gain,ns,-0.0000415,0.00000999,-4.158990568,0.0000414,neg,ns,0.007850428,0.002925748,2.683220784,0.007683096,pos,ns,2.114463723,-0.000184451,0.000100616,-1.83321218,0.067729808,neg,ns,0.859437683,Pex14,Pex14_Intron,4,149061998,149062047,149062046,149062047,50,-,AAATACAGATCTTTTCTGTAACAGTCAATATGACAGCTCCCGGCAATACG,"Intron (Pex14-201/Pex14, intron 2 of 8)",4,148960535,149099876,139342,2,Pex14-201,37829,Pex14-201;Pex14-202;Pex14-205;Pex14-203;Pex14-204,Pex14;Pex14;Pex14;Pex14;Pex14,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,41,48,56273,ENSMUSG00000028975,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6464,cg15369744,0.00000733,0.00000254,2.882884458,0.00421596,gain,ns,-0.0000179,0.00000432,-4.154151332,0.0000423,neg,ns,-0.003182539,0.001265718,-2.514414748,0.012429111,neg,ns,1.905559935,0.0000934,0.0000435,2.146141826,0.032637701,pos,ns,0.952499452,Zfp536,Zfp536_Intron,7,37364368,37364417,37364416,37364417,50,-,GCAACATAATACCAGTCTTTATTCAGTAACAATGTAACATAATGAGATCG,"Intron (Zfp536-211/Zfp536, intron 3 of 3)",7,37318024,37568390,250367,2,Zfp536-211,203973,Zfp536-211,Zfp536,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,73,112,243937,ENSMUSG00000043456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9395,cg21329721,0.000000337,0.0000174,0.019384834,0.984546579,gain,ns,0.000122469,0.0000295,4.152631877,0.0000425,pos,ns,0.018551374,0.008640105,2.147123574,0.032558792,pos,ns,1.487331723,-0.000178866,0.000297133,-0.601973214,0.547631978,neg,ns,0.446799138,Slc25a14,Slc25a14_fiveUTR,X,48624139,48624188,48624187,48624188,50,-,TCTTTCCCGGAATAATCCTAATTTTTCTAAGGGTGAAGTTTGCAACGGCG,Promoter (<=1kb),20,48623413,48631036,7624,1,Slc25a14-203,726,Slc25a14-203;Slc25a14-201;Slc25a14-204;Slc25a14-205;Slc25a14-207;Slc25a14-202;Slc25a14-206;Slc25a14-208,Slc25a14;Slc25a14;Slc25a14;Slc25a14;Slc25a14;Slc25a14;Slc25a14;Slc25a14,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,3,20523,ENSMUSG00000031105,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5707,cg19109725,0.00022128,0.0000198,11.17519072,1.37E-24,gain,yes,-0.000139678,0.0000336,-4.152215765,0.0000426,neg,ns,0.07650405,0.009855171,7.762833626,1.22E-13,pos,yes,12.9145251,-0.002000124,0.000338919,-5.901488586,9.44E-09,neg,yes,0.572723716,Mapkap1,Mapkap1_Intron,2,34602460,34602509,34602508,34602509,50,+,CTGTTGAGAGCTGCCAGGGAAGTCGACATTTTGATTGATGTTGGTACACG,"Intron (Mapkap1-204/Mapkap1, intron 9 of 10)",2,34406862,34623475,216614,1,Mapkap1-204,195598,Mapkap1-204;Mapkap1-202;Mapkap1-201;Mapkap1-209;Mapkap1-203,Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,59,227743,ENSMUSG00000038696,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3609,cg23441889,-0.00000248,0.00000437,-0.567163648,0.571013461,loss,ns,0.0000309,0.00000743,4.152474695,0.0000426,pos,ns,0.008590684,0.00217725,3.945658667,0.0000985,pos,ns,4.006632014,-0.000243194,0.0000749,-3.247977707,0.001289735,neg,ns,0.899958186,Gm12067,Gm12067_Intergenic_upstream,11,24764492,24764541,24764492,24764493,50,+,CGAGGAATCAATTAAAGTTGATTTGGCATATCTGCTTTTGACAAATATAA,Distal Intergenic,11,24552438,24553962,1525,2,Gm12067-201,-210530,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,26,58,100417843,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18702,cg25548142,0.0000527,0.00000853,6.176899351,2.05E-09,gain,yes,-0.0000602,0.0000145,-4.151582504,0.0000427,neg,ns,0.012647309,0.004247132,2.977846626,0.003131792,pos,ns,2.504207074,-0.000673699,0.000146059,-4.612527835,0.00000583,neg,ns,0.621105213,Snx11,Snx11_Intron,11,96767293,96767342,96767341,96767342,50,-,CATTTGGAGCATTGGGCTCATTAATATTCATGAGCCATCCCCACCAATCG,"Intron (Gm11537-201/Gm11537-201, intron 1 of 1)",11,96770098,96771050,953,2,Snx11-203,3757,Snx11-201;Snx11-202;Snx11-204;Snx11-203,Snx11;Snx11;Snx11;Snx11,10189;10217;10150;3708,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,74479,ENSMUSG00000020876,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14247,cg14398903,0.00000378,0.0000106,0.358080443,0.720526814,gain,ns,0.0000744,0.0000179,4.151424392,0.0000427,pos,ns,0.016207106,0.005253122,3.085233142,0.002217262,pos,ns,2.65418289,-0.000327373,0.000180654,-1.812148097,0.070930734,neg,ns,0.80914945,Onecut1,Onecut1_Intergenic_downstream,9,74893672,74893721,74893720,74893721,50,-,TTTGTAAACTCCTAGGACGAGTGCCTTGCTTGAACCAAAGTGTTAAACCG,Downstream (1-2kb),9,74866484,74890360,23877,1,Onecut1-202,27237,Onecut1-201;Onecut1-202,Onecut1;Onecut1,0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,4,28,15379,ENSMUSG00000043013,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17598,cg18736756,0.00000466,0.00000664,0.701716761,0.483382291,gain,ns,0.0000468,0.0000113,4.151166783,0.0000428,pos,ns,0.008936292,0.003303543,2.7050632,0.007206727,pos,ns,2.142261953,-0.000120811,0.000113609,-1.063395833,0.288430123,neg,ns,0.946440655,Aktip,Aktip_Exon,8,91171149,91171198,91171197,91171198,50,-,CAGAAAGATTTTATTAAACCAAATGAGCAAATCATCTGCGTATTATTGCG,"Exon (Gm45666-201/Gm45666-201, exon 2 of 2)",8,91125916,91199976,74061,2,Aktip-209,28778,Aktip-209;Aktip-207,Aktip;Aktip,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,6,14339,ENSMUSG00000031667,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1076,cg20509119,-0.00000431,0.0000146,-0.294542073,0.768540857,loss,ns,0.000103244,0.0000249,4.149556236,0.0000431,pos,ns,0.012326253,0.007289227,1.691023291,0.091837413,pos,ns,1.036980358,-0.0000921,0.000250676,-0.367594179,0.713426693,neg,ns,0.298723578,Gm14515,Gm14515_Intergenic_upstream,X,11494210,11494259,11494258,11494259,50,-,CCCAGATGGTCAGGGAAGCCCTTTCCCGCCTCACAAAGAGGATCGCTGCG,Distal Intergenic,20,11601354,11601569,216,1,Gm14515-201,-107144,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,21,28,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9232,cg11069909,0.000029,0.00000339,8.556065788,5.48E-16,gain,yes,-0.0000239,0.00000576,-4.148802548,0.0000432,neg,ns,-0.007150985,0.001688704,-4.234598868,0.0000302,neg,ns,4.519813629,0.000194357,0.0000581,3.346684696,0.000918508,pos,ns,0.897807963,Cadm1,Cadm1_Intron,9,47803301,47803350,47803301,47803302,50,+,CGCTCTTGTTTGTGACATTTCCCTGTTGGGTGCTCGTTTGCAAGCTCATT,"Intron (Cadm1-204/Cadm1, intron 5 of 9)",9,47530173,47853385,323213,1,Cadm1-204,273128,Cadm1-204;Cadm1-209;Cadm1-206;Cadm1-202;Cadm1-203;Cadm1-205;Cadm1-211;Cadm1-208;Cadm1-201,Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,77,54725,ENSMUSG00000032076,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12228,cg08716112,-0.00000118,0.00000467,-0.253552644,0.80000926,loss,ns,-0.0000329,0.00000794,-4.148136338,0.0000433,neg,ns,0.005066449,0.002325947,2.178230776,0.030142148,pos,ns,1.520825806,-0.000301455,0.00008,-3.768696601,0.000196421,neg,ns,0.887759122,Ptch1,Ptch1_Exon,13,63540780,63540829,63540780,63540781,50,-,CGGCACCCTGGGACTTGGAGCAGTCCCAGCGCAGCATGGTTAGACAGGCA,"Exon (Ptch1-201/Ptch1, exon 10 of 23)",13,63508328,63565735,57408,2,Ptch1-201,24906,Ptch1-201;Ptch1-204;Ptch1-206;Ptch1-202;Ptch1-210;Ptch1-207;Ptch1-203;Ptch1-205;Ptch1-208,Ptch1;Ptch1;Ptch1;Ptch1;Ptch1;Ptch1;Ptch1;Ptch1;Ptch1,0;0;0;0;-1102;0;0;0;4487,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,36,19206,ENSMUSG00000021466,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13648,cg10510607,-0.0000173,0.0000192,-0.900804703,0.368391439,loss,ns,0.00013497,0.0000326,4.145098417,0.0000439,pos,ns,0.002512254,0.009539364,0.263356603,0.792450697,pos,ns,0.101027748,0.000694484,0.000328058,2.116955602,0.035059921,pos,ns,0.745867985,Gpr50,Gpr50_Exon,X,71667226,71667275,71667274,71667275,50,-,CTCAATGAGAATTTCCGAAGAGAATACTGGACCATCTTCCATGCTATGCG,"Exon (Gpr50-201/Gpr50, exon 2 of 2)",20,71663667,71669257,5591,1,Gpr50-201,3559,Gpr50-201;Gpr50-202;Gpr50-203,Gpr50;Gpr50;Gpr50,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,14765,ENSMUSG00000056380,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
26108,cg26601187,0.0000158,0.0000171,0.922857303,0.356799282,gain,ns,0.000120577,0.0000291,4.14404456,0.0000441,pos,ns,0.012466853,0.008524307,1.462506307,0.144615566,pos,ns,0.839784958,-0.0000439,0.00029315,-0.149854453,0.880976896,neg,ns,0.756587118,Dcx,Dcx_Exon,X,143931090,143931139,143931138,143931139,50,-,ACAGCGTACACAATCCCCTTGAAGTAGCGGTCCCCATTGCGGTAGAAACG,"Exon (Dcx-201/Dcx, exon 2 of 7)",20,143855842,143933311,77470,2,Dcx-201,2172,Dcx-201;Dcx-203;Dcx-202;Dcx-204;Dcx-206;Dcx-205,Dcx;Dcx;Dcx;Dcx;Dcx;Dcx,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,8,13193,ENSMUSG00000031285,conserved gene and region,X,143930980,143931139,160,*,160,10,0.49375,1.025641026,0.0625,0.00000493,CpGisland,TRUE,NA,NRS
11949,cg20252108,0.0000604,0.00000598,10.10841658,5.99E-21,gain,yes,-0.0000421,0.0000102,-4.141270829,0.0000446,neg,ns,-0.004463721,0.002975443,-1.500186882,0.134583747,neg,ns,0.871007386,0.000248486,0.000102325,2.428392247,0.015734532,pos,ns,0.719976268,Psmd14,Psmd14_Intron,2,61794987,61795036,61794987,61794988,50,-,CGTTTCTAGTGTGAATAGCCACAAACATTTTCAGTGCTTTTTTGTTGGTT,"Intron (Psmd14-201/Psmd14, intron 10 of 11)",2,61711694,61800376,88683,1,Psmd14-201,83293,Psmd14-201;Psmd14-208;Psmd14-202,Psmd14;Psmd14;Psmd14,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,9,59029,ENSMUSG00000026914,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8843,cg10083965,0.0000419,0.0000141,2.982886462,0.003082114,gain,ns,-0.0000988,0.0000239,-4.137571656,0.0000453,neg,ns,0.049728159,0.006998365,7.10568269,8.26E-12,pos,yes,11.08293662,-0.000647904,0.000240673,-2.692049155,0.007487241,neg,ns,0.566614227,Vegfa,Vegfa_Exon,17,46021017,46021066,46021065,46021066,50,+,CTGCCTCGCCTTGCAACGCGAGTCTGTGTTTTTGCAGGAACATTTACACG,"Exon (Vegfa-202/Vegfa, exon 6 of 7)",17,46016993,46031815,14823,2,Vegfa-201,10749,Vegfa-201;Vegfa-202;Vegfa-210;Vegfa-207;Vegfa-205;Vegfa-208;Vegfa-204;Vegfa-206;Vegfa-203;Vegfa-209,Vegfa;Vegfa;Vegfa;Vegfa;Vegfa;Vegfa;Vegfa;Vegfa;Vegfa;Vegfa,0;0;0;0;0;0;0;0;0;10290,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,7,22339,ENSMUSG00000023951,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25415,cg19416390,-0.00000463,0.00000246,-1.88399506,0.060501315,loss,ns,0.0000173,0.00000417,4.136250991,0.0000455,pos,ns,0.001516778,0.001222022,1.241203838,0.215468852,pos,ns,0.666615503,0.00000287,0.000042,0.06818893,0.9456792,pos,ns,0.953321218,Hnrnpr,Hnrnpr_Exon,4,136332384,136332433,136332432,136332433,50,+,TGTTGGTTTAACAGAGGGTTTGGTGGACGTTATTCTCTATCATCAACCCG,"Exon (Hnrnpr-204/Hnrnpr, exon 7 of 10)",4,136310942,136340681,29740,1,Hnrnpr-204,21442,Hnrnpr-204;Hnrnpr-202;Hnrnpr-207;Hnrnpr-201;Hnrnpr-206;Hnrnpr-205;Hnrnpr-208,Hnrnpr;Hnrnpr;Hnrnpr;Hnrnpr;Hnrnpr;Hnrnpr;Hnrnpr,0;0;0;0;0;20793;-3640,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,7,74326,ENSMUSG00000066037,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8145,cg22414596,-0.0000384,0.0000103,-3.739934149,0.000219214,loss,ns,0.0000721,0.0000174,4.135154073,0.0000457,pos,ns,0.005019538,0.005107968,0.982687858,0.326527401,pos,ns,0.486080369,-0.000169485,0.000175663,-0.96483507,0.335379478,neg,ns,0.342491169,Pax2,Pax2_Intron,19,44797690,44797739,44797690,44797691,50,-,CGTGTGAGGTGACATTTGAATTTACAATTCCGCTGAGAAAAGCCATTAAT,"Intron (Pax2-203/Pax2, intron 5 of 9)",19,44756045,44837851,81807,1,Pax2-203,41645,Pax2-203;Pax2-201;Pax2-202,Pax2;Pax2;Pax2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,35,166,18504,ENSMUSG00000004231,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
6692,cg19977633,0.00000311,0.00000904,0.344206822,0.730924123,gain,ns,0.0000635,0.0000154,4.134822103,0.0000458,pos,ns,0.009702581,0.004497469,2.157342687,0.03174712,pos,ns,1.498295672,-0.000150109,0.000154668,-0.970525426,0.332541278,neg,ns,0.467276918,Arap3,Arap3_Intron,18,38059448,38059497,38059448,38059449,50,+,CGAGGAGGCCTTTTGCATTTGATGTAAATATTATGGTGATGAGAGGTGAC,"Intron (Gm30093-201/Gm30093-201, intron 3 of 3)",18,37996312,37998969,2658,2,Arap3-203,-60479,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,10,106952,ENSMUSG00000024451,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20516,cg01856529,0.000319082,0.0000212,15.03306204,9.62E-39,gain,yes,-0.000149084,0.0000361,-4.134449291,0.0000459,neg,ns,-0.020110751,0.010564071,-1.903693319,0.057876018,neg,ns,1.237501355,0.000433235,0.000363298,1.192506999,0.233974498,pos,ns,0.576706111,Cbx5,Cbx5_fiveUTR,15,103215011,103215060,103215059,103215060,50,+,CCACCACTCACCTTGGAATTTCCGGGAGCTGAGCAGTTTAGGTCAGAGCG,5' UTR,15,103191544,103239816,48273,2,Cbx5-202,24756,Cbx5-202;Cbx5-201;Cbx5-203;Cbx5-204,Cbx5;Cbx5;Cbx5;Cbx5,0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,3,12419,ENSMUSG00000009575,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23510,cg12211405,0.0000122,0.0000173,0.704826104,0.481447657,gain,ns,0.000121621,0.0000294,4.132604083,0.0000462,pos,ns,0.002016078,0.008621866,0.233833146,0.81526886,pos,ns,0.088699146,0.000397221,0.000296505,1.339675931,0.181331972,pos,ns,0.741145993,Gm18441,Gm18441_Promoter,12,118739536,118739585,118739536,118739537,50,+,CGACAATTGCACCACCAGAAAAACACTGGCTGATGAAATCTGAGCAGTTA,Promoter (6-7kb),12,118732439,118733055,617,2,Gm18441-201,-6481,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,9,100417195,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3221,cg12307242,0.000434507,0.000017,25.55465448,2.73E-78,gain,yes,-0.000119357,0.0000289,-4.132023197,0.0000463,neg,ns,0.026848677,0.008462588,3.172631933,0.001662054,pos,ns,2.779354962,0.000236163,0.000291028,0.811478134,0.417713761,pos,ns,0.743135186,Cadps2,Cadps2_Intron,6,23272710,23272759,23272758,23272759,50,-,TCACACTTATTGTGCATGACTGTAGACTGGTAAATCATATTAGCAGCCCG,"Intron (Cadps2-213/Cadps2, intron 28 of 29)",6,23262773,23839137,576365,2,Cadps2-213,566378,Cadps2-213;Cadps2-205;Cadps2-212;Cadps2-201;Cadps2-209;Cadps2-206;Cadps2-211;Cadps2-207;Cadps2-202;Cadps2-210,Cadps2;Cadps2;Cadps2;Cadps2;Cadps2;Cadps2;Cadps2;Cadps2;Cadps2;Cadps2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,15,320405,ENSMUSG00000017978,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25708,cg13449577,0.0000519,0.00000855,6.069448729,3.74E-09,gain,yes,-0.00006,0.0000145,-4.131832938,0.0000463,neg,ns,0.015586469,0.004255649,3.662536486,0.000293572,pos,ns,3.532285541,-0.000348369,0.000146351,-2.380357248,0.017900038,neg,ns,0.755259525,Nek7,Nek7_Intron,1,138500316,138500365,138500364,138500365,50,+,CTCCCAGCAGCTGAATTTTTCAGGCTAATTTGATCCTCCACACTGAGACG,"Intron (Nek7-202/Nek7, intron 8 of 9)",1,138482875,138619749,136875,2,Nek7-202,119384,Nek7-202;Nek7-203;Nek7-201,Nek7;Nek7;Nek7,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,9,59125,ENSMUSG00000026393,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25976,cg01608469,0.0000773,0.0000142,5.431247664,0.000000113,gain,yes,0.0000999,0.0000242,4.132010447,0.0000463,pos,ns,0.032956858,0.007080539,4.654569216,0.00000482,pos,ns,5.31704564,-0.000764177,0.000243499,-3.138316412,0.001862619,neg,ns,0.312072653,Tmem164,Tmem164_Exon,X,142682610,142682659,142682610,142682611,50,+,CGTGGACCCCAGTTTTGCAGGCAATGGGGGCCCCGACTGTGCTGCCTTCC,"Exon (Tmem164-201/Tmem164, exon 2 of 7)",20,142681406,142843494,162089,1,Tmem164-204,1204,Tmem164-204;Tmem164-202;Tmem164-205;Tmem164-201;Tmem164-206;Tmem164-208;Tmem164-207,Tmem164;Tmem164;Tmem164;Tmem164;Tmem164;Tmem164;Tmem164,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,15,209497,ENSMUSG00000047045,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
21421,cg07714022,0.0000466,0.00000642,7.266938774,3.00E-12,gain,yes,-0.000045,0.0000109,-4.12787172,0.0000471,neg,ns,-0.004506546,0.003193505,-1.411159726,0.159200315,neg,ns,0.798056076,0.000023,0.000109824,0.209160743,0.834460134,pos,ns,0.752323679,Rbm5,Rbm5_Intergenic_downstream,9,107729940,107729989,107729988,107729989,50,-,CATAGTAACAGAAAGGTGCATCCCATCACCATGGCAACAGGCAAACACCG,Distal Intergenic,9,107743333,107744234,902,2,Rbm5-207,14294,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,11,83486,ENSMUSG00000032580,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22547,cg24695375,-0.0000473,0.0000123,-3.842267553,0.000147872,loss,ns,0.0000863,0.0000209,4.126219098,0.0000474,pos,ns,0.022662584,0.006128925,3.697643985,0.000257302,pos,ns,3.589557641,-0.001108586,0.000210773,-5.25961445,0.00000027,neg,yes,0.279445132,Olfm3,Olfm3_fiveUTR,3,115081012,115081061,115081012,115081013,50,+,CGGGATCTTAATCAGTCACTATGAAAACTCATTAGCTCCACAGCAATGAG,5' UTR,3,114904078,115125722,221645,1,Olfm3-202,176934,Olfm3-202;Olfm3-203;Olfm3-201,Olfm3;Olfm3;Olfm3,0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,2,229759,ENSMUSG00000027965,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7693,cg20498067,0.000156965,0.0000218,7.200747966,4.56E-12,gain,yes,-0.000152797,0.000037,-4.12601918,0.0000475,neg,ns,0.070603763,0.010849305,6.507675867,3.06E-10,pos,ns,9.513605086,-0.00255592,0.000373107,-6.850371545,3.97E-11,neg,yes,0.584390555,Fbxl5,Fbxl5_Exon,5,43745304,43745353,43745304,43745305,50,+,CGCCAGAGCGGCAGCAGGCTCGAAAACCACACTGCAAATTCTGGCATCCA,"Exon (Fbxl5-204/Fbxl5, exon 11 of 11)",5,43744615,43782143,37529,2,Fbxl5-204,36790,Cc2d2a-201;Fbxl5-204;Fbxl5-209;Fbxl5-211;Fbxl5-201;Fbxl5-203,Cc2d2a;Fbxl5;Fbxl5;Fbxl5;Fbxl5;Fbxl5,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,242960,ENSMUSG00000039753,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23951,cg04695476,0.00000705,0.00000479,1.470898837,0.14233278,gain,ns,-0.0000336,0.00000814,-4.1238636,0.0000479,neg,ns,-0.001934534,0.002384223,-0.811389725,0.417764437,neg,ns,0.379068532,-0.00011014,0.000082,-1.343277332,0.180164719,neg,ns,0.844213099,Hectd4,Hectd4_Exon,5,121304369,121304418,121304369,121304370,50,-,CGGATCAGACTGCCTCCAGGAATCATGATAAAGCTCAGGGAAATTTCTGG,"Exon (Hectd4-201/Hectd4, exon 25 of 76)",5,121220219,121368577,148359,1,Hectd4-201,84150,Hectd4-201;Hectd4-207;Hectd4-203;Hectd4-205;Hectd4-202,Hectd4;Hectd4;Hectd4;Hectd4;Hectd4,0;0;0;0;-1312,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,8,269700,ENSMUSG00000042744,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23640,cg22315785,0.00000299,0.0000173,0.172902196,0.862841139,gain,ns,0.000121242,0.0000294,4.123582597,0.000048,pos,ns,0.013394086,0.008613818,1.554953458,0.120977443,pos,ns,0.9172956,-0.0000749,0.000296228,-0.252865685,0.800539601,neg,ns,0.915015932,Ino80,Ino80_Exon,2,119423723,119423772,119423723,119423724,50,+,CGTAGCTGATGGAGCCTGTAGGAGGCTTTCAGAGACAGGAAAAGAGCTAA,"Exon (Ino80-201/Ino80, exon 24 of 36)",2,119373042,119477687,104646,2,Ino80-201,53915,Ino80-201;Ino80-202,Ino80;Ino80,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,3,68142,ENSMUSG00000034154,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23369,cg24028289,0.00000738,0.0000123,0.60020288,0.548809532,gain,ns,0.0000861,0.0000209,4.121699521,0.0000483,pos,ns,-0.000737468,0.006122775,-0.120446736,0.904207297,neg,ns,0.043731993,0.000250023,0.000210562,1.187408597,0.235975531,pos,ns,0.646514387,Sox21,Sox21_Intergenic_downstream,14,118194620,118194669,118194668,118194669,50,+,TAATCTCCCGCTGTATCTTCATTTTTCATTGAACTAGCCAGTTTTCTGCG,Distal Intergenic,14,118233232,118237030,3799,2,Sox21-201,42361,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,26,27,223227,ENSMUSG00000061517,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
12814,cg17341782,0.000147932,0.0000123,12.01363866,1.48E-27,gain,yes,-0.0000861,0.0000209,-4.114533136,0.0000498,neg,ns,-0.003281508,0.00612866,-0.535436411,0.592732021,neg,ns,0.22714161,0.000286435,0.000210764,1.359031927,0.175124372,pos,ns,0.680461752,Tmem33,Tmem33_Intergenic_upstream,5,67228751,67228800,67228751,67228752,50,+,CGCCACTCGATTCCGGGATAATTTTTAATATATATGCAATAAATGTTCAC,Distal Intergenic,5,67260565,67291461,30897,1,Tmem33-201,-31765,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,22,22,67878,ENSMUSG00000037720,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
22117,cg08981150,0.0000198,0.00000315,6.289664712,1.08E-09,gain,yes,-0.000022,0.00000535,-4.107148518,0.0000513,neg,ns,0.001388613,0.001567717,0.885754798,0.376436231,pos,ns,0.424308583,-0.0000697,0.0000539,-1.291976212,0.197327708,neg,ns,0.930017025,Eif4g2,Eif4g2_Exon,7,111078444,111078493,111078492,111078493,50,-,TGACCCTCTGCTGCTGGGCCATCAAAGTTTGGTGCATCTTCTGCCAATCG,"Exon (Eif4g2-213/Eif4g2, exon 6 of 22)",7,111067750,111083030,15281,2,Eif4g2-213,4537,Eif4g2-213;Eif4g2-206;Eif4g2-208;Eif4g2-214;Eif4g2-202;Eif4g2-204;Eif4g2-211;Eif4g2-210;Eif4g2-209;Eif4g2-203;Eif4g2-201;Eif4g2-212;Eif4g2-205,Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2,0;0;0;-4195;-3745;-3059;-2235;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,20,22,13690,ENSMUSG00000005610,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19147,cg16797109,0.0000253,0.00000543,4.653113215,0.00000485,gain,ns,-0.0000379,0.00000923,-4.106642576,0.0000514,neg,ns,-0.007115371,0.002703134,-2.632267255,0.008906357,neg,ns,2.050299919,0.000122555,0.000093,1.318356847,0.188357447,pos,ns,0.871975631,Ddx23,Ddx23_Exon,15,98650970,98651019,98650970,98650971,50,+,CGTGACTGCTCTCGCTTCTGCTGCTTGAGGTCAATGCCTGCAATGAAGCC,"Exon (Ddx23-201/Ddx23, exon 9 of 17)",15,98645134,98662889,17756,2,Ddx23-201,11870,Ddx23-201;Ddx23-204;Ddx23-203;Ddx23-205,Ddx23;Ddx23;Ddx23;Ddx23,0;0;0;11865,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,74351,ENSMUSG00000003360,conserved gene but different region,15,98650708,98651116,409,*,409,20,0.550122249,0.664284554,0.048899756,1.18E-09,CpGisland,TRUE,U10,Tr-S
23374,cg26490921,-0.0000296,0.0000117,-2.53416923,0.011763486,loss,ns,0.0000815,0.0000198,4.104240847,0.0000519,pos,ns,-0.009024135,0.005814584,-1.551982907,0.121686594,neg,ns,0.914757264,0.000416097,0.000199963,2.080867705,0.038266728,pos,ns,0.740924976,Sox21,Sox21_Intergenic_downstream,14,118194835,118194884,118194883,118194884,50,-,ATTTGCAATTTAATGACATTACAGCTCTCAGCTTAGGCTGGCGTGCTGCG,Distal Intergenic,14,118233232,118237030,3799,2,Sox21-201,42195,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,26,27,223227,ENSMUSG00000061517,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21438,cg24911138,0.0000237,0.0000177,1.340942587,0.180920794,gain,ns,-0.000123392,0.0000301,-4.103689966,0.000052,neg,ns,0.043752498,0.008809057,4.966763107,0.00000113,pos,ns,5.948156334,-0.00151251,0.000302943,-4.992724496,0.000000995,neg,yes,0.429523927,Rbm5,Rbm5_threeUTR,9,107759826,107759875,107759826,107759827,50,+,CGAAGGCGAAACCACGGCTTACACCTAGAGACAGCATTCAGATATAGACG,3' UTR,9,107740371,107770996,30626,2,Rbm5-214,11121,Rbm5-214;Rbm5-219;Rbm5-224;Rbm5-210;Rbm5-201;Rbm5-211;Rbm5-221;Rbm5-220;Rbm5-223;Rbm5-208;Rbm5-203;Rbm5-204;Rbm5-218,Rbm5;Rbm5;Rbm5;Rbm5;Rbm5;Rbm5;Rbm5;Rbm5;Rbm5;Rbm5;Rbm5;Rbm5;Rbm5,0;0;0;0;0;0;0;0;0;0;0;11084;11070,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,11,83486,ENSMUSG00000032580,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
301,cg13888366,0.0000407,0.00000586,6.951905836,2.14E-11,gain,yes,-0.0000408,0.00000995,-4.099690161,0.0000529,neg,ns,0.014296089,0.002915579,4.903344258,0.00000152,pos,ns,5.817342824,-0.000594513,0.000100267,-5.929323278,8.11E-09,neg,yes,0.616674488,U2af2,U2af2_Exon,7,5068807,5068856,5068855,5068856,50,-,TTCTGACTTTCTCAACCTGCACTTTGCTACATTTGATAAACCAGCCCCCG,"Exon (U2af2-206/U2af2, exon 2 of 8)",7,5062143,5079938,17796,1,U2af2-201,6664,U2af2-201;U2af2-209;U2af2-203;U2af2-207;U2af2-208;U2af2-205;U2af2-204;U2af2-202;U2af2-206,U2af2;U2af2;U2af2;U2af2;U2af2;U2af2;U2af2;U2af2;U2af2,0;0;6532;6524;6515;6503;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,Exon,1,4,22185,ENSMUSG00000030435,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
994,cg22603530,0.0000107,0.0000142,0.753191783,0.451906296,gain,ns,0.0000985,0.000024,4.095688918,0.0000538,pos,ns,0.022332679,0.007044733,3.170124321,0.001676005,pos,ns,2.775724745,-0.000662804,0.000242268,-2.735831242,0.006580855,neg,ns,0.624877927,Syt7,Syt7_threeUTR,19,10426594,10426643,10426642,10426643,50,+,CGCTCCAACCCAGGCAGCTGGGACCACGTGGTGGGGCAGATTCGAAACCG,3' UTR,19,10389090,10448444,59355,1,Syt7-201,37504,Syt7-201;Syt7-208;Syt7-206;Syt7-203;Syt7-202;Syt7-210;Syt7-211;Syt7-204;Syt7-205;Syt7-207;Syt7-209;Syt7-213;Syt7-214;Syt7-215;Syt7-212,Syt7;Syt7;Syt7;Syt7;Syt7;Syt7;Syt7;Syt7;Syt7;Syt7;Syt7;Syt7;Syt7;Syt7;Syt7,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,9,10,54525,ENSMUSG00000024743,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23058,cg25285086,0.000130186,0.00000759,17.14603186,8.18E-47,gain,yes,-0.0000528,0.0000129,-4.094054883,0.0000541,neg,ns,-0.003430088,0.003778996,-0.907671735,0.364756721,neg,ns,0.437996697,0.0000923,0.000129959,0.710472995,0.477945015,pos,ns,0.634585419,Taok3,Taok3_fiveUTR,5,117241100,117241149,117241148,117241149,50,-,ATGTATTCATAAGGGATGAGGCGGGCCACGGCGATCCCAGGCCTGAGCCG,5' UTR,5,117120129,117275217,155089,1,Taok3-203,120971,Taok3-203;Taok3-210;Taok3-201;Taok3-205;Taok3-208;Taok3-202,Taok3;Taok3;Taok3;Taok3;Taok3;Taok3,0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,11,20,330177,ENSMUSG00000061288,conserved gene and region,5,117241107,117241224,118,*,118,13,0.661016949,1.011206328,0.110169492,8.62E-11,CpGisland,TRUE,U10,Tr-S
5823,cg10823530,-0.00000213,0.00000537,-0.397279753,0.691434569,loss,ns,-0.0000373,0.00000912,-4.09106722,0.0000548,neg,ns,0.00177865,0.002670536,0.666027144,0.505889056,pos,ns,0.295944715,-0.000336777,0.0000918,-3.667019713,0.000288686,neg,ns,0.682445448,Prpf4b,Prpf4b_threeUTR,13,34901987,34902036,34901987,34901988,50,+,CGTTTTCCTAGGTGTGTGTGTGCAGGCCACAGCAGCATGCCCTTGGTGTA,3' UTR,13,34875302,34906064,30763,1,Prpf4b-201,26685,Prpf4b-201;Prpf4b-208;Prpf4b-202;Prpf4b-203;Prpf4b-210;Prpf4b-207;Prpf4b-204;Prpf4b-205;Prpf4b-209,Prpf4b;Prpf4b;Prpf4b;Prpf4b;Prpf4b;Prpf4b;Prpf4b;Prpf4b;Prpf4b,0;0;0;9863;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,4,19134,ENSMUSG00000021413,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20088,cg02262384,0.0000675,0.00000932,7.239836656,3.56E-12,gain,yes,-0.0000648,0.0000158,-4.090269192,0.000055,neg,ns,-0.007280824,0.004640894,-1.568840736,0.117705183,neg,ns,0.929204412,0.000116216,0.0001596,0.72817026,0.467059031,pos,ns,0.725687565,Map3k12,Map3k12_Exon,15,102502357,102502406,102502357,102502358,50,+,CGGTGCAGACAGGTCCCTTCTGACTTAATCTTTTCAAAGTGCAGTTTTAC,"Exon (Map3k12-201/Map3k12, exon 8 of 14)",15,102497646,102516836,19191,2,Map3k12-201,14430,Gm10337-201;Map3k12-201;Map3k12-208;Map3k12-207;Map3k12-206;Map3k12-203;Map3k12-205;Map3k12-202;Pcbp2-201;Pcbp2-212;Pcbp2-214;Pcbp2-216;Pcbp2-203;Pcbp2-217;Pcbp2-202;Pcbp2-206;Pcbp2-219;Pcbp2-230;Pcbp2-210;Pcbp2-204;Pcbp2-215;Pcbp2-225,Gm10337;Map3k12;Map3k12;Map3k12;Map3k12;Map3k12;Map3k12;Map3k12;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2,0;0;0;0;14598;14569;14410;14406;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,26404,ENSMUSG00000023050,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8056,cg07410014,0.0000203,0.0000109,1.868842633,0.062587608,gain,ns,0.0000754,0.0000184,4.089819341,0.0000551,pos,ns,0.00801603,0.005401462,1.484048299,0.138812136,pos,ns,0.857572562,0.000101744,0.000185756,0.547729218,0.584271992,pos,ns,0.54428424,Pax5,Pax5_Intron,4,44708577,44708626,44708625,44708626,50,-,GATTAAATGATTATTCAGGCAATTGAACTAATCAAAGAGCCCATCGACCG,"Intron (Pax5-201/Pax5, intron 1 of 9)",4,44524757,44710487,185731,2,Pax5-201,1861,Pax5-201;Pax5-202;Pax5-203;Pax5-204;Pax5-205;Pax5-207;Pax5-206;Pax5-209;Pax5-210;Pax5-212;Pax5-213;Pax5-214;Pax5-215;Pax5-208,Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,19,45,18507,ENSMUSG00000014030,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
11409,cg12271854,0.00000783,0.0000151,0.519112833,0.604052457,gain,ns,0.000104772,0.0000256,4.089110609,0.0000552,pos,ns,0.024141398,0.007506408,3.216105169,0.001436632,pos,ns,2.842654393,-0.000499794,0.000258145,-1.936098637,0.053764463,neg,ns,0.53447227,Zic3,Zic3_Exon,X,58034486,58034535,58034534,58034535,50,+,AGTTCAAACTAGCACCAGCCACAACCCTGGACTTCCTCCTAATTTTAACG,"Exon (Zic3-201/Zic3, exon 3 of 3)",20,58030643,58036559,5917,1,Zic3-201,3843,Zic3-204;Zic3-201;Zic3-203;Zic3-202,Zic3;Zic3;Zic3;Zic3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,17,22773,ENSMUSG00000067860,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
5196,cg01810880,0.0000205,0.00000776,2.648988087,0.008486911,gain,ns,0.0000539,0.0000132,4.088798648,0.0000553,pos,ns,-0.000988666,0.003861046,-0.25606168,0.798073043,neg,ns,0.097957358,0.000376133,0.000132781,2.832727202,0.004917569,pos,ns,0.736699427,Gm13852,Gm13852_Intergenic_downstream,6,32706716,32706765,32706716,32706717,50,-,CGGAAAGGGTTTCCCAAGACAATGGAGATGCAATTTGAATTCCCAAGCCC,Distal Intergenic,6,32610119,32610360,242,1,Gm13852-201,96646,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27333,cg15569619,0.0000263,0.00000432,6.090687604,3.33E-09,gain,yes,-0.00003,0.00000734,-4.088592681,0.0000554,neg,ns,-0.005404254,0.002150222,-2.5133473,0.012466015,neg,ns,1.904272362,0.000184435,0.0000739,2.494183336,0.013145346,pos,ns,0.807593209,Ncoa5,Ncoa5_Exon,2,165023101,165023150,165023149,165023150,50,-,GAGCCCAACTCTCCCAAGGTAACTCACGGCTTCAGGGTACTTTACCTTCG,"Exon (Ncoa5-201/Ncoa5, exon 2 of 8)",2,165000357,165034867,34511,2,Ncoa5-201,11717,Ncoa5-201;Ncoa5-202;Ncoa5-203;Ncoa5-206;Ncoa5-208;Ncoa5-205;Ncoa5-207,Ncoa5;Ncoa5;Ncoa5;Ncoa5;Ncoa5;Ncoa5;Ncoa5,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,7,228869,ENSMUSG00000039804,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20854,cg04638311,0.00000288,0.0000116,0.248054533,0.804256444,gain,ns,0.0000807,0.0000197,4.088419592,0.0000554,pos,ns,0.006491821,0.005782335,1.122698861,0.262434174,pos,ns,0.580979613,0.0000571,0.000198854,0.286900695,0.774380023,pos,ns,0.253165009,Pax6,Pax6_Promoter,2,105665093,105665142,105665141,105665142,50,+,TGATGAGAGATCTTTCCGCTCATTGCCCATTCAAATACAATTGTAGATCG,Promoter (3-4kb),2,105668900,105697364,28465,1,Pax6-206,-3758,Pax6-206;Pax6-207;Pax6-210;Pax6-214,Pax6;Pax6;Pax6;Pax6,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,10,78,18508,ENSMUSG00000027168,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
4599,cg19264807,0.0000648,0.00000784,8.269309136,4.01E-15,gain,yes,-0.0000544,0.0000133,-4.085210948,0.0000561,neg,ns,0.001944657,0.003902584,0.498299955,0.61862598,pos,ns,0.208571845,0.0000531,0.00013421,0.395750088,0.692561621,pos,ns,0.769711629,E2f3,E2f3_Exon,13,29916865,29916914,29916865,29916866,50,+,CGGTTAACAGTTTGAGGTCCAGGGTGCAGCTTTGGATCAGTTCATCTAAT,"Exon (E2f3-203/E2f3, exon 4 of 7)",13,29906575,29984391,77817,2,E2f3-203,67477,E2f3-203;E2f3-204;E2f3-201;E2f3-202,E2f3;E2f3;E2f3;E2f3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,10,13557,ENSMUSG00000016477,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4787,cg02179615,0.0000745,0.00000703,10.60426667,1.28E-22,gain,yes,-0.0000488,0.0000119,-4.084435551,0.0000563,neg,ns,-0.010078245,0.003498978,-2.880339865,0.004249231,neg,ns,2.371689623,0.000175008,0.00012033,1.454409314,0.146844585,pos,ns,0.690689001,Kcnk3,Kcnk3_Intergenic_upstream,5,30572061,30572110,30572061,30572062,50,+,CGGGCCAGGTGGGCCTCTGACACACAGCAGGAATTTTCCACTGGCGCATC,Distal Intergenic,5,30588170,30625271,37102,1,Kcnk3-201,-16060,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,2,16527,ENSMUSG00000049265,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3355,cg17179896,-0.0000137,0.0000121,-1.13723485,0.256318373,loss,ns,-0.0000837,0.0000205,-4.082725491,0.0000567,neg,ns,0.019287239,0.006006748,3.210928577,0.001461905,pos,ns,2.835080894,-0.001388558,0.000206572,-6.721922832,8.62E-11,neg,yes,0.714149368,Srrm2,Srrm2_fiveUTR,17,23808098,23808147,23808098,23808099,50,-,CGACCTTTCGACTCATGTTGCTGGAGAAGGATGTGAACCCTGGGGGCAAG,Promoter (<=1kb),17,23808098,23808708,611,1,Srrm2-208,0,Srrm2-206;Srrm2-210;Srrm2-201;Srrm2-212;Srrm2-211;Srrm2-208;Srrm2-203;Srrm2-207,Srrm2;Srrm2;Srrm2;Srrm2;Srrm2;Srrm2;Srrm2;Srrm2,0;0;0;0;0;0;0;-3753,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,13,75956,ENSMUSG00000039218,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7295,cg27456819,-0.00000185,0.00000411,-0.449521893,0.65336935,loss,ns,0.0000285,0.00000698,4.08255054,0.0000567,pos,ns,0.002269735,0.002044515,1.110158426,0.267791145,pos,ns,0.572203787,-0.0000245,0.0000703,-0.347861876,0.72818,neg,ns,0.955673602,Lsamp,Lsamp_threeUTR,16,42174154,42174203,42174154,42174155,50,+,CGGTGAGAGGAATAAATGGATCCATCAGTCTGGCCGTACCACTGTGGCTG,3' UTR,16,39984371,42176295,2191925,1,Lsamp-206,2189783,Lsamp-206;Lsamp-202;Lsamp-204;Lsamp-203,Lsamp;Lsamp;Lsamp;Lsamp,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,23,268890,ENSMUSG00000061080,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23507,cg15587557,0.0000106,0.00000388,2.728853474,0.006718324,gain,ns,-0.0000269,0.00000659,-4.082416508,0.0000568,neg,ns,0.002241998,0.001930441,1.161391935,0.246376013,pos,ns,0.608401577,-0.000196133,0.0000664,-2.954364289,0.003373072,neg,ns,0.81361809,Med13l,Med13l_Exon,5,118728670,118728719,118728670,118728671,50,+,CGTAGGCCAAAGACTGCCTCTCATGGCAGAGGTCAGCGAGACAGCCTTAT,"Exon (Med13l-201/Med13l, exon 10 of 31)",5,118560719,118765438,204720,1,Med13l-201,167951,Med13l-201;Med13l-202,Med13l;Med13l,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,16,76199,ENSMUSG00000018076,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13860,cg23374309,-0.0000115,0.00000985,-1.163281874,0.245609784,loss,ns,0.0000683,0.0000167,4.078574822,0.0000577,pos,ns,0.007936369,0.004903542,1.618497059,0.106572453,pos,ns,0.972355038,0.000218711,0.000168632,1.29697119,0.195605571,pos,ns,0.737935876,Rpl31-ps2,Rpl31-ps2_Intergenic_upstream,13,73117211,73117260,73117259,73117260,50,+,TTCTGTAAGATTGTAATTACAAGCTTCGTTGGTTTGCTACTTATCACACG,Distal Intergenic,13,73233395,73233737,343,1,Rpl31-ps2-201,-116135,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,8,621486,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5325,cg09080324,0.00000115,0.00000496,0.231884668,0.816780588,gain,ns,0.0000344,0.00000843,4.077224626,0.000058,pos,ns,0.012879786,0.002469653,5.215220096,0.000000336,pos,ns,6.473268709,-0.00017826,0.0000849,-2.098870107,0.036636986,neg,ns,0.103827092,Nkx1-1,Nkx1-1_Promoter,5,33443622,33443671,33443670,33443671,50,-,TCAGGATGGCAGATGACGGCTAAAATTACCCGGAATCAATATTCTCACCG,Promoter (9-10kb),5,33430734,33433976,3243,2,Nkx1-1-201,-9695,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,8,13,672284,ENSMUSG00000029112,conserved gene and region,5,33443554,33443671,118,*,118,9,0.542372881,1.041176471,0.076271186,0.00000366,CpGisland,TRUE,NA,NRS
2615,cg11580199,0.000363389,0.0000182,19.93477413,1.75E-57,gain,yes,-0.000126248,0.000031,-4.076666675,0.0000581,neg,ns,-0.023260076,0.009072709,-2.563741114,0.010826383,neg,ns,1.965516623,0.000641124,0.00031201,2.054822161,0.040733992,pos,ns,0.467384262,Etl4,Etl4_Intron,2,20722310,20722359,20722358,20722359,50,+,CATTGAGAGGTTATGACAACATGAGCCATATTGTATTTATAAACATCACG,"Intron (Etl4-207/Etl4, intron 7 of 7)",2,19909780,20744816,835037,1,Etl4-207,812530,Etl4-207;Etl4-209;Etl4-201;Etl4-208;Etl4-203;Etl4-202;Etl4-211;Etl4-217;Etl4-212;Etl4-205,Etl4;Etl4;Etl4;Etl4;Etl4;Etl4;Etl4;Etl4;Etl4;Etl4,0;0;0;0;0;0;0;-19;-19;-266,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,208618,ENSMUSG00000036617,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27008,cg05809127,-0.0000421,0.00000777,-5.419227318,0.00000012,loss,yes,-0.0000538,0.0000132,-4.076350037,0.0000582,neg,ns,0.004011062,0.003864807,1.037842739,0.300152109,pos,ns,0.522658601,-0.000640247,0.00013291,-4.817135393,0.00000228,neg,ns,0.848257012,Rbm39,Rbm39_threeUTR,2,156167673,156167722,156167721,156167722,50,+,ATGTTTAAAAACCTTAATTTGATGCTATGAGGCAACCCAATCTTTCCTCG,3' UTR,2,156147239,156180238,33000,2,Rbm39-203,12516,Rbm39-203;Rbm39-217;Rbm39-215;Rbm39-201;Rbm39-225;Rbm39-223;Rbm39-220;Rbm39-204;Rbm39-209;Rbm39-207;Rbm39-206;Rbm39-216;Rbm39-221;Rbm39-213;Rbm39-214,Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39,0;0;0;0;0;0;-2750;0;-2461;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,11,13,170791,ENSMUSG00000027620,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5024,cg06392275,0.00001,0.00000526,1.9059975,0.057575237,gain,ns,-0.0000364,0.00000893,-4.074790751,0.0000586,neg,ns,-0.006285655,0.002616664,-2.402163854,0.016886393,neg,ns,1.772463119,-0.000140743,0.00009,-1.564042292,0.118827858,neg,ns,0.832202724,Dlg1,Dlg1_threeUTR,16,31846825,31846874,31846873,31846874,50,+,CTTCTTCAGCAGTCATTCAATGACAAGCGTAAAAAGAACCTCTTTTCCCG,3' UTR,16,31663443,31875129,211687,1,Dlg1-206,183382,Dlg1-206;Dlg1-205;Dlg1-203;Dlg1-209;Dlg1-202;Dlg1-201;Dlg1-204;Dlg1-208;Dlg1-207;Dlg1-213;Dlg1-214,Dlg1;Dlg1;Dlg1;Dlg1;Dlg1;Dlg1;Dlg1;Dlg1;Dlg1;Dlg1;Dlg1,0;0;0;0;0;0;0;55054;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,8,13383,ENSMUSG00000022770,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24612,cg06759265,0.00000077,0.0000134,0.057263997,0.954371791,gain,ns,0.000093,0.0000228,4.074621981,0.0000586,pos,ns,0.018781318,0.006688428,2.808031724,0.005300625,pos,ns,2.275672936,-0.000339597,0.000230014,-1.476414233,0.140847787,neg,ns,0.671521283,Dlgap3,Dlgap3_Exon,4,127214398,127214447,127214398,127214399,50,-,CGGCTGTTTCCGCATGCGGAGCCACAGCTACCTCCGGGCCATCCAGGCCG,"Exon (Dlgap3-201/Dlgap3, exon 6 of 12)",4,127169204,127237022,67819,1,Dlgap3-201,45194,Dlgap3-201;Dlgap3-203;Dlgap3-202;Dlgap3-204,Dlgap3;Dlgap3;Dlgap3;Dlgap3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,7,242667,ENSMUSG00000042388,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27571,cg14830513,0.0000437,0.0000207,2.110825909,0.035587783,gain,ns,0.000143308,0.0000352,4.070623981,0.0000596,pos,ns,0.031245745,0.010314021,3.029443647,0.002656191,pos,ns,2.575740638,-0.000410091,0.000354698,-1.156168647,0.248502418,neg,ns,0.348854906,Tshz2,Tshz2_Intron,2,169962278,169962327,169962278,169962279,50,+,CGCTGACATGACCTTTCTTGATTGAGTTTCACTGAGGAAATTTTTTGATG,"Intron (Tshz2-203/Tshz2, intron 1 of 1)",2,169884893,170071816,186924,1,Tshz2-203,77385,Tshz2-203;Tshz2-205,Tshz2;Tshz2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,21,30,228911,ENSMUSG00000047907,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2001,cg03543715,0.0000292,0.0000142,2.054185222,0.040795988,gain,ns,0.0000981,0.0000241,4.070318157,0.0000596,pos,ns,0.015592339,0.00706377,2.207367753,0.028020661,pos,ns,1.552521622,-0.00022653,0.000242922,-0.932521683,0.351792693,neg,ns,0.402322788,Gm5721,Gm5721_Intergenic_downstream,6,16992236,16992285,16992284,16992285,50,+,TTCTGAAAAGCAATGTCACACTCTGATGACCTCTTCTCCTCATTAAAACG,Distal Intergenic,6,16925231,16926926,1696,1,Gm5721-201,67005,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,435881,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10222,cg04189329,0.000107563,0.0000078,13.7855835,4.77E-34,gain,yes,-0.0000539,0.0000133,-4.068941567,0.00006,neg,ns,0.004533339,0.003883417,1.167358365,0.243962791,pos,ns,0.612676406,0.00020524,0.00013355,1.536800216,0.125362248,pos,ns,0.285806261,Hoxa11,Hoxa11_Exon,6,52245816,52245865,52245816,52245817,50,-,CGTAAGCTGACGTGGAAATCTATCCCCATCCTTAGCAGGGAGGTGCTGGT,Promoter (<=1kb),6,52242106,52245810,3705,2,Hoxa11-201,-55,Hoxa10-201;Hoxa11-201;Hoxa11-202,Hoxa10;Hoxa11;Hoxa11,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,15,18,15396,ENSMUSG00000038210,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
27395,cg11332417,-0.0000212,0.00000722,-2.940563119,0.003522697,loss,ns,-0.0000499,0.0000123,-4.068040977,0.0000602,neg,ns,0.005650867,0.003593024,1.572732848,0.116800717,pos,ns,0.93255449,-0.000361283,0.000123564,-2.923855106,0.003711946,neg,ns,0.946047468,Ildr2,Ildr2_Exon,1,166291430,166291479,166291478,166291479,50,+,CTTGCTGATCTCTTGCCCAGTTTTGCTGTGGAGATTATGCCAGGTATTCG,"Exon (Ildr2-201/Ildr2, exon 4 of 10)",1,166254139,166316823,62685,1,Ildr2-201,37291,Ildr2-201;Ildr2-202;Ildr2-203;Ildr2-204;Ildr2-205;Ildr2-206;Ildr2-207,Ildr2;Ildr2;Ildr2;Ildr2;Ildr2;Ildr2;Ildr2,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,100039795,ENSMUSG00000040612,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5387,cg22256767,-0.00000925,0.00000729,-1.269536041,0.205202162,loss,ns,-0.0000503,0.0000124,-4.066700288,0.0000605,neg,ns,0.005422204,0.003626822,1.495029058,0.135924104,pos,ns,0.866703521,-0.000120561,0.000124726,-0.966605626,0.334494696,neg,ns,0.852820333,Fgfr3,Fgfr3_Exon,5,33732193,33732242,33732241,33732242,50,+,AGTACACCTGCCTGGCGGGCAATTCTATTGGGTTTTCTCATCACTCTGCG,"Exon (Fgfr3-201/Fgfr3, exon 8 of 18)",5,33721724,33737067,15344,1,Fgfr3-201,10469,Fgfr3-214;Fgfr3-201;Fgfr3-203;Fgfr3-210;Fgfr3-209;Fgfr3-202;Fgfr3-211;Fgfr3-215;Fgfr3-216;Fgfr3-205;Fgfr3-208;Fgfr3-212;Fgfr3-204;Fgfr3-213;Fgfr3-217;Fgfr3-207;Fgfr3-206,Fgfr3;Fgfr3;Fgfr3;Fgfr3;Fgfr3;Fgfr3;Fgfr3;Fgfr3;Fgfr3;Fgfr3;Fgfr3;Fgfr3;Fgfr3;Fgfr3;Fgfr3;Fgfr3;Fgfr3,10519;0;0;0;0;0;0;0;9749;0;8421;0;0;0;-1010;-1450;-2363,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,14184,ENSMUSG00000054252,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27141,cg00953793,-0.00000335,0.0000146,-0.229453739,0.818667588,loss,ns,0.000100729,0.0000248,4.065043241,0.0000609,pos,ns,0.022113763,0.007259468,3.046196086,0.002516659,pos,ns,2.599175639,-0.000674321,0.000249653,-2.701036796,0.007292485,neg,ns,0.187357637,Rps6ka3,Rps6ka3_Intron,X,159257235,159257284,159257283,159257284,50,+,TAATAGTTACTGAGTGAGTGACCCCATTTCTGGAAAGCATGACTGAAACG,"Intron (Rps6ka3-204/Rps6ka3, intron 2 of 24)",20,159210307,159364502,154196,1,Rps6ka3-204,46928,Rps6ka3-204;Rps6ka3-205;Rps6ka3-201;Rps6ka3-203;Rps6ka3-207,Rps6ka3;Rps6ka3;Rps6ka3;Rps6ka3;Rps6ka3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,6,110651,ENSMUSG00000031309,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
305,cg16886381,0.000102436,0.0000144,7.107425608,8.17E-12,gain,yes,-0.0000995,0.0000245,-4.06427827,0.0000611,neg,ns,0.039787909,0.007173278,5.546684714,6.24E-08,pos,ns,7.204543928,-0.001475226,0.000246688,-5.980120353,6.14E-09,neg,yes,0.280299487,Ewsr1,Ewsr1_Exon,11,5079547,5079596,5079595,5079596,50,-,AGGCCTTTCCCTTTAAAAGCCAGTACCGCTCTGAGCCTTGGGGGGGCTCG,"Exon (Ewsr1-208/Ewsr1, exon 1 of 5)",11,5069689,5099266,29578,2,Ewsr1-203,19670,Ewsr1-203;Ewsr1-202;Ewsr1-205;Ewsr1-209;Ewsr1-212;Ewsr1-208;Ewsr1-211;Ewsr1-204;Ewsr1-210,Ewsr1;Ewsr1;Ewsr1;Ewsr1;Ewsr1;Ewsr1;Ewsr1;Ewsr1;Ewsr1,0;0;0;0;-1026;0;0;0;6440,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,8,14030,ENSMUSG00000009079,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6107,cg01011077,0.000019,0.000021,0.904136003,0.366625363,gain,ns,0.000145016,0.0000357,4.064330743,0.0000611,pos,ns,-0.002480922,0.010453105,-0.237338256,0.812551159,neg,ns,0.090149286,0.000668281,0.000359481,1.859014548,0.063972512,pos,ns,0.215353966,Rpl17-ps9,Rpl17-ps9_Intergenic_upstream,7,36071766,36071815,36071814,36071815,50,-,TTTCCGCAGGTGCAGCTGAGGCAATCAGTCAATTCAATCAAAAGCCTCCG,Distal Intergenic,7,36118274,36118828,555,1,Rpl17-ps9-201,-46508,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,14,22,100043872,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17167,cg27462914,-0.0000264,0.0000144,-1.838652376,0.066922794,loss,ns,-0.0000991,0.0000244,-4.063804891,0.0000612,neg,ns,-0.009108037,0.007147395,-1.274315514,0.203506054,neg,ns,0.691422667,-0.000205543,0.000245798,-0.836224992,0.403672441,neg,ns,0.867870471,Ano4,Ano4_threeUTR,10,88982231,88982280,88982279,88982280,50,-,AAAAGAAACATTTTCAGGGTGAAGCTGTTCTCCCACTCAGACTCTGTGCG,3' UTR,10,88948994,89257790,308797,2,Ano4-206,275510,Ano4-206;Ano4-204;Ano4-208;Ano4-210;Ano4-207,Ano4;Ano4;Ano4;Ano4;Ano4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,8,9,320091,ENSMUSG00000035189,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24621,cg14363797,0.00018824,0.000011,17.18391516,5.85E-47,gain,yes,-0.0000756,0.0000186,-4.062262015,0.0000616,neg,ns,-0.008203707,0.005452131,-1.504678946,0.133424784,neg,ns,0.87476349,0.000450409,0.000187498,2.402201545,0.016884685,pos,ns,0.45293682,Kif5a,Kif5a_Exon,10,127262785,127262834,127262785,127262786,50,+,CGTCCCCTTGGAAAATGGGGATGAACTTGTCTCCCCGCAGAATCTCAGCC,Promoter (<=1kb),10,127225696,127263348,37653,2,Kif5a-201,514,Dctn2-202;Dctn2-201;Kif5a-201;Kif5a-202;Kif5a-203,Dctn2;Dctn2;Kif5a;Kif5a;Kif5a,-3534;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,8,16572,ENSMUSG00000074657,conserved gene and region,10,127262730,127263217,488,*,488,47,0.653688525,0.908068731,0.096311475,3.88E-35,CpGisland,TRUE,U3,Pr-B
22395,cg05754145,0.0000233,0.00000291,8.002290374,2.47E-14,gain,yes,-0.0000201,0.00000494,-4.062390063,0.0000616,neg,ns,-0.001451115,0.001446832,-1.002960178,0.3166623,neg,ns,0.499403638,0.0000633,0.0000498,1.271196161,0.204611863,pos,ns,0.939972953,Actc1,Actc1_Exon,2,114047542,114047591,114047590,114047591,50,-,GTGGACAGAGAGGCCAGGATGGAGCCCCCAATCCAGACAGAGTATTTACG,"Exon (Actc1-201/Actc1, exon 7 of 7)",2,114047282,114052887,5606,2,Actc1-201,5296,Actc1-201;Actc1-202,Actc1;Actc1,0;5957,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,11464,ENSMUSG00000068614,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10294,cg11266179,0.000120509,0.00000681,17.69665805,6.32E-49,gain,yes,-0.000047,0.0000116,-4.060848458,0.000062,neg,ns,-0.005174182,0.003389255,-1.526642663,0.1278695,neg,ns,0.893233034,0.000351425,0.000116556,3.015068156,0.002781553,pos,ns,0.878877064,Hibadh,Hibadh_Intron,6,52567458,52567507,52567506,52567507,50,+,GACCATTTACGACTTGCTATGGTGTCTCTATTGTTTACCAGCGACATTCG,"Intron (Hibadh-201/Hibadh, intron 4 of 7)",6,52546228,52640389,94162,2,Hibadh-201,72882,Hibadh-201;Hibadh-203,Hibadh;Hibadh,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,13,58875,ENSMUSG00000029776,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15840,cg25595588,0.00000835,0.0000108,0.775360217,0.438717894,gain,ns,0.0000743,0.0000183,4.059106136,0.0000624,pos,ns,0.015293884,0.005360191,2.853234713,0.004618787,pos,ns,2.335472043,-0.000466052,0.000184337,-2.528265456,0.011959004,neg,ns,0.679520007,Scube1,Scube1_Intron,15,83651753,83651802,83651801,83651802,50,+,CAAGTAAGGGACAAACACGGAGCCAGTGGTTAATGACAGCCCACTTCCCG,"Intron (Scube1-204/Scube1, intron 6 of 20)",15,83604999,83725021,120023,2,Scube1-204,73219,Scube1-204;Scube1-202;Scube1-201;Scube1-203;Scube1-205;Scube1-206,Scube1;Scube1;Scube1;Scube1;Scube1;Scube1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,8,64706,ENSMUSG00000016763,conserved gene and region,15,83651770,83651878,109,*,109,9,0.660550459,0.762237762,0.082568807,0.0000019,CpGisland,TRUE,NA,NRS
16150,cg23314394,0.0000267,0.00000506,5.283265199,0.00000024,gain,yes,-0.0000349,0.00000859,-4.05807477,0.0000627,neg,ns,-0.005481976,0.002517072,-2.177917491,0.030165692,neg,ns,1.520486708,0.000245992,0.0000866,2.841804221,0.00478322,pos,ns,0.870845589,Lin52,Lin52_Intron,12,84532573,84532622,84532573,84532574,50,-,CGGCTGGAGTTTGCCGCTAAGACTCTTGCTGTTTGGGTCCCAGCAACACA,"Intron (Lin52-202/Lin52, intron 4 of 4)",12,84456248,84546145,89898,1,Lin52-202,76325,Lin52-201;Lin52-202;Lin52-203;Lin52-204,Lin52;Lin52;Lin52;Lin52,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,6,217708,ENSMUSG00000085793,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26595,cg09319435,-0.00000222,0.0000051,-0.434728609,0.664061892,loss,ns,-0.0000352,0.00000867,-4.058166011,0.0000627,neg,ns,0.001873459,0.002540636,0.737397657,0.461438319,pos,ns,0.335886343,-0.000311532,0.0000874,-3.565575934,0.000420339,neg,ns,0.921327881,Pex14,Pex14_Intron,4,148964792,148964841,148964792,148964793,50,+,CGCATATGGTGCCAGATGCCAGGATTTAGAAATAAAATCTGACATCTGGG,"Intron (Gm17029-201/Gm17029-201, intron 1 of 2)",4,148960535,149099876,139342,2,Pex14-201,135035,Pex14-201;Pex14-202,Pex14;Pex14,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,41,48,56273,ENSMUSG00000028975,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20213,cg01163536,-0.00000109,0.00000397,-0.27390115,0.784343,loss,ns,0.0000274,0.00000675,4.053249203,0.0000639,pos,ns,0.003084511,0.001977152,1.560077698,0.119761789,pos,ns,0.921681726,-0.0000538,0.000068,-0.791686406,0.429148897,neg,ns,0.075477137,Hoxc11,Hoxc11_Exon,15,102949857,102949906,102949857,102949858,50,+,CGAGGCTCTCCAAGTTTGGGGCCAGGCGATAAATCTCTGGCGAATCTTCC,Promoter (4-5kb),15,102954427,102957708,3282,1,Hoxc11-201,-4521,Hoxc11-201,Hoxc11,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,24,109663,ENSMUSG00000001656,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
12937,cg14466155,-0.0000254,0.0000114,-2.23436706,0.026171514,loss,ns,0.0000782,0.0000193,4.052209125,0.0000642,pos,ns,0.010730204,0.005650937,1.898836147,0.058514359,pos,ns,1.232737547,-0.0000359,0.000194335,-0.184868546,0.853453028,neg,ns,0.396457009,Gm44887,Gm44887_Intron,7,68482735,68482784,68482735,68482736,50,-,CGACTGGATAGATCATTAAGAGAATTGGTTTACAAGGCTCTTGCTGAGCT,"Intron (Gm34549-203/Gm34549-203, intron 4 of 6)",7,68598677,68598854,178,2,Gm44887-201,116119,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,4,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25149,cg10400390,-0.0000238,0.0000198,-1.19961027,0.231206779,loss,ns,-0.000136309,0.0000336,-4.051656225,0.0000643,neg,ns,0.01485222,0.009856202,1.506890769,0.132856988,pos,ns,0.876615597,0.0000321,0.000338954,0.09483203,0.924509513,pos,ns,0.706532975,Ahdc1,Ahdc1_Intergenic_downstream,4,133086130,133086179,133086178,133086179,50,-,GCGGTTGCCTAGCAACCCCACAGCTGTCTGTTGACCTAGAAGAAGCTGCG,Distal Intergenic,4,133066249,133072063,5815,1,Ahdc1-208,19930,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,49,230793,ENSMUSG00000037692,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7622,cg10570966,0.000204863,0.0000125,16.41384223,5.23E-44,gain,yes,-0.0000859,0.0000212,-4.051251198,0.0000644,neg,ns,-0.007961984,0.006211984,-1.281713607,0.200900926,neg,ns,0.697018061,0.000339545,0.00021363,1.589409169,0.112987347,pos,ns,0.442507967,Zbtb20,Zbtb20_Intron,16,43503054,43503103,43503102,43503103,50,+,CCGAGCCTGCTGACAGATCATTCAAATTCAATTGTTTTATGTCTAAGCCG,"Intron (Zbtb20-211/Zbtb20, intron 4 of 4)",16,42907542,43569781,662240,1,Zbtb20-211,595512,Zbtb20-211;Zbtb20-217;Zbtb20-204;Zbtb20-215;Zbtb20-201;Zbtb20-203;Zbtb20-214;Zbtb20-213;Zbtb20-219;Zbtb20-216;Zbtb20-208;Zbtb20-207;Zbtb20-220;Zbtb20-206,Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,98,56490,ENSMUSG00000022708,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4457,cg22103215,-0.000037,0.0000128,-2.889020832,0.004136699,loss,ns,0.0000881,0.0000217,4.05069128,0.0000646,pos,ns,0.005313653,0.006369045,0.834293499,0.404758043,pos,ns,0.392804512,0.000640424,0.000219031,2.923895503,0.003711477,pos,ns,0.520533525,Sox4,Sox4_threeUTR,13,28949481,28949530,28949481,28949482,50,+,CGAACTCAAATCGGCATTTAGATAGATCCAGTGGTTTAAACGGCACGTTT,3' UTR,13,28948919,28953713,4795,2,Sox4-201,4183,Sox4-201,Sox4,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,8,12,20677,ENSMUSG00000076431,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18294,cg19107537,0.0000217,0.0000138,1.56544198,0.11849951,gain,ns,0.0000952,0.0000235,4.050139656,0.0000647,pos,ns,0.01925762,0.006888011,2.795817482,0.00549992,pos,ns,2.259643624,-0.000303787,0.000236878,-1.282463025,0.2006384,neg,ns,0.73430864,Gm48316,Gm48316_Intron,13,94702289,94702338,94702337,94702338,50,+,CCAAATTCACCCGTTTAAGCCATAATTGCAGAAACTATCAAATAATTACG,"Intron (Gm32351-201/Gm32351-201, intron 1 of 2)",13,94752270,94752593,324,1,Gm48316-201,-49932,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,42,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
123,cg27356290,0.0000365,0.00000856,4.261848311,0.0000269,gain,ns,-0.0000589,0.0000145,-4.049650206,0.0000649,neg,ns,0.010183504,0.00425891,2.391105624,0.017393909,pos,ns,1.759602799,-0.000316943,0.000146464,-2.163971419,0.031229994,neg,ns,0.885230113,Kdm2a,Kdm2a_threeUTR,19,4317824,4317873,4317872,4317873,50,+,AGTGCAAAAAGCTCTCTGCTGCCCTAGAGAGAGGATCTTTGGACAGGCCG,3' UTR,19,4314419,4398285,83867,2,Kdm2a-201,80412,Kdm2a-201;Kdm2a-202;Kdm2a-213;Kdm2a-211;Kdm2a-207,Kdm2a;Kdm2a;Kdm2a;Kdm2a;Kdm2a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,30,225876,ENSMUSG00000054611,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1035,cg25922496,-0.0000115,0.00000607,-1.89142557,0.059499589,loss,ns,0.0000417,0.0000103,4.046775472,0.0000656,pos,ns,-0.001922995,0.003021036,-0.636534889,0.524897569,neg,ns,0.279925439,0.000122803,0.000103893,1.182015771,0.238105326,pos,ns,0.861784043,Gm14485,Gm14485_Intergenic_upstream,X,11088975,11089024,11089023,11089024,50,+,ACATGCTATCTTCCTCCTTGCTCACACCTCTGTAGGCAAGACTGGCTGCG,Distal Intergenic,20,11020515,11021007,493,2,Gm14485-201,-67968,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,9,547156,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26924,cg26883243,0.0000382,0.0000236,1.617305099,0.106829496,gain,ns,0.000162507,0.0000402,4.047061874,0.0000656,pos,ns,0.025455711,0.011763862,2.163890596,0.031236255,pos,ns,1.50534104,0.000248146,0.000404558,0.613374206,0.540078711,pos,ns,0.445727041,Cacna1e,Cacna1e_fiveUTR,1,154725652,154725701,154725700,154725701,50,-,GCCAATCGATGAGCTTCTTGGCATATTTCCTGACAATGTTATCTTCTCCG,Promoter (<=1kb),1,154390731,154726356,335626,2,Cacna1e-203,655,Cacna1e-203;Cacna1e-201;Cacna1e-207;Cacna1e-206;Cacna1e-209;Cacna1e-204,Cacna1e;Cacna1e;Cacna1e;Cacna1e;Cacna1e;Cacna1e,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,9,19,12290,ENSMUSG00000004110,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
11466,cg08195802,-0.00000113,0.00000438,-0.259035606,0.795779689,loss,ns,-0.0000301,0.00000744,-4.04556866,0.000066,neg,ns,-0.002317208,0.002178708,-1.063569994,0.288351308,neg,ns,0.540078074,-0.0001125,0.0000749,-1.50148614,0.134247734,neg,ns,0.897380653,Hnrnpk,Hnrnpk_fiveUTR,13,58397900,58397949,58397948,58397949,50,+,ATAGCCAACCAGGGTTTTCACATGGGCGTTCAGGGGCGGATGGGCCAACG,5' UTR,13,58391142,58403343,12202,2,Hnrnpk-202,5394,Hnrnpk-202;Hnrnpk-224;Hnrnpk-221;Hnrnpk-232;Hnrnpk-216;Hnrnpk-201;Hnrnpk-205;Hnrnpk-217;Hnrnpk-206;Hnrnpk-209;Hnrnpk-213;Hnrnpk-227;Hnrnpk-234;Hnrnpk-233;Hnrnpk-228;Hnrnpk-214;Hnrnpk-215;Hnrnpk-211;Hnrnpk-208;Hnrnpk-212;Hnrnpk-231;Hnrnpk-230;Hnrnpk-203;Hnrnpk-218;Hnrnpk-226;Hnrnpk-207;Hnrnpk-219;Hnrnpk-225;Hnrnpk-229;Hnrnpk-223;Hnrnpk-220;Hnrnpk-210;Hnrnpk-204;Hnrnpk-222;Rmi1-205;Rmi1-201;Rmi1-204;Rmi1-203,Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Rmi1;Rmi1;Rmi1;Rmi1,0;0;0;0;0;0;0;-4032;-3115;-3925;-2702;-3816;-4011;-3730;-3204;0;-2180;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;4553;4106;-4299;-4314;-4751;-4994,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,10,19,15387,ENSMUSG00000021546,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11942,cg12277614,0.0000239,0.00000382,6.257757693,1.30E-09,gain,yes,-0.0000263,0.00000649,-4.045041736,0.0000661,neg,ns,-0.000772004,0.001901379,-0.406023196,0.685005676,neg,ns,0.16430583,0.0000261,0.0000654,0.398952329,0.690203007,pos,ns,0.862268357,Psmd14,Psmd14_Exon,2,61761052,61761101,61761052,61761053,50,-,CGTCAGAGTGATTGATGTGTTTGCTATGCCACAGTCAGGAACAGTGAGTA,"Exon (Psmd14-201/Psmd14, exon 5 of 12)",2,61711694,61800376,88683,1,Psmd14-201,49358,Psmd14-201;Psmd14-206;Psmd14-207;Psmd14-208,Psmd14;Psmd14;Psmd14;Psmd14,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,9,59029,ENSMUSG00000026914,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11636,cg08719385,0.000039,0.0000178,2.189377687,0.029314688,gain,ns,0.000122221,0.0000302,4.040643503,0.0000673,pos,ns,0.033803581,0.008861592,3.814617061,0.000164608,pos,ns,3.783548662,-0.000754784,0.000304749,-2.476737866,0.013792155,neg,ns,0.511250485,Fgf13,Fgf13_fiveUTR,X,59567795,59567844,59567843,59567844,50,+,TGTTTGAACATGTGATGAGCAACGTGTGAGCCTGTTACACCGCAGAGTCG,Promoter (<=1kb),20,59250885,59567821,316937,2,Fgf13-208,0,Fgf13-203;Fgf13-205;Fgf13-206;Fgf13-208;Fgf13-209,Fgf13;Fgf13;Fgf13;Fgf13;Fgf13,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,9,14168,ENSMUSG00000031137,mapped to different genes,X,59567671,59567972,302,*,302,20,0.496688742,1.073777778,0.066225166,4.98E-12,CpGisland,TRUE,NA,NRS
25197,cg07810218,0.0000116,0.000013,0.892239471,0.372956639,gain,ns,0.0000893,0.0000221,4.038751324,0.0000678,pos,ns,0.004192001,0.006480479,0.646865944,0.51819737,pos,ns,0.285504795,-0.000198227,0.000222863,-0.889455889,0.374447814,neg,ns,0.354957653,Pcdh19,Pcdh19_Exon,X,133682157,133682206,133682157,133682158,50,+,CGAGATGCAATGCAGACACTTGCTGTTTTGTCCTTTTATAAAACAGCCGA,"Exon (Pcdh19-202/Pcdh19, exon 2 of 6)",20,133582860,133688987,106128,2,Pcdh19-202,6781,Pcdh19-202;Pcdh19-203;Pcdh19-201;Pcdh19-205,Pcdh19;Pcdh19;Pcdh19;Pcdh19,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,8,279653,ENSMUSG00000051323,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26368,cg04050203,-0.00000288,0.00000305,-0.946459913,0.344651208,loss,ns,0.0000209,0.00000518,4.037614668,0.0000681,pos,ns,0.002147283,0.001517116,1.415371489,0.157963405,pos,ns,0.801443513,-0.000031,0.0000522,-0.594082237,0.552890387,neg,ns,0.962043926,Htr2c,Htr2c_Intron,X,147169802,147169851,147169850,147169851,50,+,CTATGCTCAATACTTTCGGATTATGTACTGTGAACAACGTACAGACGTCG,"Intron (Htr2c-201/Htr2c, intron 5 of 5)",20,146962513,147197274,234762,1,Htr2c-201,207289,Htr2c-201;Htr2c-202;Htr2c-207;Htr2c-203,Htr2c;Htr2c;Htr2c;Htr2c,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,8,15560,ENSMUSG00000041380,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15607,cg20031917,0.0000128,0.00000317,4.032637471,0.0000695,gain,ns,-0.0000217,0.00000538,-4.036615816,0.0000684,neg,ns,0.0018553,0.001577143,1.176367935,0.240350416,pos,ns,0.619155122,-0.0000443,0.0000542,-0.816785558,0.414678223,neg,ns,0.928812302,Nfib,Nfib_threeUTR,4,82290345,82290394,82290393,82290394,50,-,GTTCATTTGCAACCCACAAAAAGTACCCAAAGAACGTTATCCTCCAACCG,3' UTR,4,82290173,82505308,215136,2,Nfib-201,214914,Nfib-201;Nfib-203;Nfib-202,Nfib;Nfib;Nfib,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,11,66,18028,ENSMUSG00000008575,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18419,cg23075928,0.0000182,0.00000372,4.903026192,0.00000153,gain,yes,-0.0000255,0.00000632,-4.033229955,0.0000693,neg,ns,0.008673718,0.001850295,4.687748319,0.00000414,pos,ns,5.382577998,-0.000295844,0.0000636,-4.649337468,0.00000493,neg,ns,0.925425509,Spop,Spop_fiveUTR,11,95470568,95470617,95470616,95470617,50,-,GTTTAACCTTCAAACTGGCGATGTCAAGGGTTCCAAGTCCTCCACCTCCG,5' UTR,11,95414080,95493406,79327,1,Spop-202,56488,Spop-202;Spop-204;Spop-201;Spop-203;Spop-205,Spop;Spop;Spop;Spop;Spop,0;0;0;0;-3702,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,3,20747,ENSMUSG00000057522,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21051,cg22879048,-0.0000285,0.00000929,-3.069338555,0.002334971,loss,ns,0.0000636,0.0000158,4.032508901,0.0000695,pos,ns,0.011060277,0.004622851,2.392522839,0.017328124,pos,ns,1.761248448,-0.00018843,0.000158979,-1.185249822,0.236826467,neg,ns,0.553120947,Vrk1,Vrk1_Intergenic_downstream,12,106173354,106173403,106173354,106173355,50,+,CGAAGCAAACAGGGGGTGAGACTTTGGCGTAATATTTTAATCAAATTGTC,Distal Intergenic,12,106030717,106075409,44693,1,Vrk1-204,142637,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,29,37,22367,ENSMUSG00000021115,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
24777,cg08019530,0.0000128,0.00000404,3.176583017,0.001640289,gain,ns,-0.0000276,0.00000686,-4.032282609,0.0000696,neg,ns,0.001100926,0.002008477,0.548139572,0.58399056,pos,ns,0.233594173,-0.0000736,0.0000691,-1.065498005,0.287479789,neg,ns,0.896669126,Tial1,Tial1_Exon,7,128448716,128448765,128448764,128448765,50,-,TATGCTGCAAAACAGAAAATCCAACAGAAGAGTTGACCCTTCTGCTATCG,"Exon (Tial1-202/Tial1, exon 3 of 12)",7,128439777,128461672,21896,2,Tial1-202,12907,Tial1-202;Tial1-208;Tial1-203;Tial1-211;Tial1-206;Tial1-214;Tial1-201;Tial1-204;Tial1-209;Tial1-205;Tial1-210;Tial1-212;Tial1-213;Tial1-207,Tial1;Tial1;Tial1;Tial1;Tial1;Tial1;Tial1;Tial1;Tial1;Tial1;Tial1;Tial1;Tial1;Tial1,0;0;0;0;0;0;0;0;0;0;0;0;-146;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,5,21843,ENSMUSG00000030846,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
659,cg03474625,0.000052,0.0000103,5.025092136,0.000000852,gain,yes,0.0000709,0.0000176,4.030324499,0.0000701,pos,ns,0.026632438,0.005150346,5.170999672,0.000000418,pos,ns,6.378349191,-0.000343938,0.00017712,-1.941838647,0.053062344,neg,ns,0.550667575,Ppp1r3f,Ppp1r3f_Exon,X,7573259,7573308,7573259,7573260,50,-,CGGCTTCATGCAGCTCTTCAGCTGCCTGGCCTCAGCCTCCACGGGACCCT,Promoter (<=1kb),20,7557296,7574283,16988,2,Ppp1r3f-205,975,Foxp3-209;Ppp1r3f-205;Ppp1r3f-201;Ppp1r3f-203,Foxp3;Ppp1r3f;Ppp1r3f;Ppp1r3f,-336;0;0;-416,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,8,54646,ENSMUSG00000039556,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
20064,cg14450387,0.0000148,0.00000777,1.908411184,0.057261564,gain,ns,-0.0000532,0.0000132,-4.028520978,0.0000707,neg,ns,0.019505646,0.003866586,5.044668598,0.000000775,pos,ns,6.11065346,-0.000852671,0.000132972,-6.412431418,5.34E-10,neg,yes,0.820000542,Rundc3a,Rundc3a_Exon,11,102402015,102402064,102402015,102402016,50,-,CGGCTCCCTGGCCTCCATTCCCAGCTGCAAGTCCCTGGCGAGCTTCAAAT,"Exon (Rundc3a-201/Rundc3a, exon 11 of 11)",11,102393403,102402555,9153,1,Rundc3a-201,8612,Rundc3a-202;Rundc3a-203;Rundc3a-204;Rundc3a-201;Rundc3a-209;Rundc3a-205;Rundc3a-210;Rundc3a-208;Rundc3a-206;Rundc3a-207;Slc25a39-202;Slc25a39-201;Slc25a39-205;Slc25a39-213;Slc25a39-207;Slc25a39-208;Slc25a39-215;Slc25a39-209;Slc25a39-203;Slc25a39-212;Slc25a39-206;Slc25a39-214;Slc25a39-204;Slc25a39-210;Slc25a39-211,Rundc3a;Rundc3a;Rundc3a;Rundc3a;Rundc3a;Rundc3a;Rundc3a;Rundc3a;Rundc3a;Rundc3a;Slc25a39;Slc25a39;Slc25a39;Slc25a39;Slc25a39;Slc25a39;Slc25a39;Slc25a39;Slc25a39;Slc25a39;Slc25a39;Slc25a39;Slc25a39;Slc25a39;Slc25a39,0;0;0;0;0;0;0;0;0;2157;5425;5480;2429;5442;5444;5392;4752;5423;5399;5251;4891;5319;5882;4744;4820,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,Exon,5,6,51799,ENSMUSG00000006575,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9558,cg10227581,0.00000635,0.00000554,1.146291482,0.252558604,gain,ns,-0.0000379,0.00000941,-4.026400913,0.0000713,neg,ns,-0.004090433,0.002758056,-1.48308576,0.139067539,neg,ns,0.85677423,0.000164789,0.0000948,1.737375935,0.083314012,pos,ns,0.871081359,Bicd2,Bicd2_Intron,13,49352951,49353000,49352999,49353000,50,+,TGCCCAGGGATGAATTCCCAGTTTTCTAAAAGCAGCTTAGCATTTGGACG,"Intron (Bicd2-201/Bicd2, intron 1 of 6)",13,49341585,49387019,45435,1,Bicd2-201,11366,Bicd2-201;Bicd2-202;Bicd2-203,Bicd2;Bicd2;Bicd2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,3,76895,ENSMUSG00000037933,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
22299,cg17489709,-0.0000348,0.00000505,-6.893307677,3.06E-11,loss,yes,-0.0000346,0.00000858,-4.025605395,0.0000715,neg,ns,0.003755416,0.002514689,1.493391773,0.136351742,pos,ns,0.865339309,-0.000157504,0.0000865,-1.821274224,0.069528931,neg,ns,0.855255268,Setd5,Setd5_Exon,6,113109620,113109669,113109620,113109621,50,+,CGTTTGTGTTTGTCATTAGGGACACCTTGTATCTCAGGTGCCTGCCTTCA,"Exon (Setd5-204/Setd5, exon 1 of 6)",6,113077365,113153435,76071,1,Setd5-201,32255,Setd5-209;Setd5-201;Setd5-206;Setd5-205;Setd5-203;Setd5-212;Setd5-202;Setd5-204;Setd5-210;Setd5-214;Setd5-207,Setd5;Setd5;Setd5;Setd5;Setd5;Setd5;Setd5;Setd5;Setd5;Setd5;Setd5,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,19,72895,ENSMUSG00000034269,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9121,cg27342032,-0.0000697,0.0000318,-2.192423574,0.02909203,loss,ns,0.00021735,0.000054,4.02547762,0.0000715,pos,ns,0.014547531,0.015818273,0.919666158,0.358462299,pos,ns,0.445556515,0.000306761,0.000543989,0.563909358,0.573223538,pos,ns,0.434466352,Samd4,Samd4_Exon,14,47016612,47016661,47016660,47016661,50,+,CACCAAAGACAGAACTCTGATGACAAGCTCAATGGGTGGCAGAACTCTCG,"Exon (Samd4-201/Samd4, exon 3 of 13)",14,46882854,47103150,220297,1,Samd4-201,133758,Samd4-201;Samd4-211;Samd4-202;Samd4-206;Samd4-203,Samd4;Samd4;Samd4;Samd4;Samd4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,11,16,74480,ENSMUSG00000021838,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
7625,cg12958012,0.000247485,0.0000141,17.54255431,2.47E-48,gain,yes,-0.0000965,0.000024,-4.024838391,0.0000717,neg,ns,-0.001914818,0.007021538,-0.272706297,0.785260559,neg,ns,0.104986215,0.000237751,0.00024147,0.984596484,0.325590141,pos,ns,0.302148627,Zbtb20,Zbtb20_Intron,16,43503441,43503490,43503441,43503442,50,+,CGGAGATTTGTGCATTGTGTCTGGTTTCCTACGGGCAGGCTGACCCAGTG,"Intron (Zbtb20-211/Zbtb20, intron 4 of 4)",16,42907542,43569781,662240,1,Zbtb20-211,595899,Zbtb20-211;Zbtb20-217;Zbtb20-204;Zbtb20-215;Zbtb20-201;Zbtb20-203;Zbtb20-214;Zbtb20-213;Zbtb20-219;Zbtb20-216;Zbtb20-208;Zbtb20-207;Zbtb20-220;Zbtb20-206;Zbtb20-221;Zbtb20-202,Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,98,56490,ENSMUSG00000022708,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
23373,cg18589741,-0.0000066,0.0000125,-0.528034086,0.597853443,loss,ns,0.0000855,0.0000212,4.024359385,0.0000719,pos,ns,-0.005498558,0.006221348,-0.88382106,0.377477734,neg,ns,0.423108661,0.000368866,0.000213952,1.72406159,0.085693646,pos,ns,0.601991803,Sox21,Sox21_Intergenic_downstream,14,118194772,118194821,118194820,118194821,50,+,GGATTCCTTCCAACATATGTTTTTGCCAGATAAGTAAACAGTGTGTGTCG,Distal Intergenic,14,118233232,118237030,3799,2,Sox21-201,42209,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,26,27,223227,ENSMUSG00000061517,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19845,cg23438859,-0.00000366,0.00000864,-0.423584515,0.672162591,loss,ns,0.000059,0.0000147,4.021626832,0.0000727,pos,ns,0.007162962,0.004300114,1.665760903,0.096771191,pos,ns,1.014253914,-0.000117659,0.000147881,-0.795636696,0.426852029,neg,ns,0.723438222,Nlgn3,Nlgn3_Intron,X,101307011,101307060,101307059,101307060,50,-,TGAATTCTCTCTCTGTTTTGTTCTCTGTTCTGTGCTGTTGTGTCTCCCCG,"Intron (Gm21986-201/Gm21986-201, intron 6 of 10)",20,101299168,101325963,26796,1,Nlgn3-202,7843,Nlgn3-202;Nlgn3-203;Nlgn3-206;Nlgn3-201;Nlgn3-205,Nlgn3;Nlgn3;Nlgn3;Nlgn3;Nlgn3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,16,245537,ENSMUSG00000031302,conserved gene but different region,X,101307059,101307160,102,*,102,9,0.607843137,1.092857143,0.088235294,0.00000109,CpGisland,TRUE,U11,Tr-P
27568,cg26959509,0.0000137,0.0000251,0.547915256,0.584144394,gain,ns,0.000171158,0.0000426,4.018259809,0.0000736,pos,ns,0.027570677,0.012478879,2.209387329,0.027878529,pos,ns,1.554730146,-0.000479023,0.000429148,-1.116220297,0.265192303,neg,ns,0.355753278,Tshz2,Tshz2_Intron,2,169962082,169962131,169962130,169962131,50,+,TGTCACACATTGTCTAGAGAAAGTTGTGCCTGGCAATCTTCCCTGTTTCG,"Intron (Tshz2-203/Tshz2, intron 1 of 1)",2,169884893,170071816,186924,1,Tshz2-203,77189,Tshz2-203;Tshz2-205,Tshz2;Tshz2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,21,30,228911,ENSMUSG00000047907,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12954,cg18203890,-0.00000516,0.00000604,-0.853120907,0.394250935,loss,ns,-0.0000412,0.0000103,-4.017520093,0.0000739,neg,ns,-0.010442475,0.003007843,-3.47174923,0.000590518,neg,ns,3.228766934,0.000170605,0.000103439,1.649319461,0.100095118,pos,ns,0.845939936,Fmr1,Fmr1_Exon,X,68712235,68712284,68712283,68712284,50,-,TAATTCTGAAGCATCAAATGCTTCTGAAACAGAATCTGACCACAGAGACG,"Exon (Fmr1-201/Fmr1, exon 15 of 17)",20,68678541,68717963,39423,1,Fmr1-201,33694,Fmr1-201;Fmr1-213;Fmr1-205;Fmr1-203;Fmr1-204;Fmr1-206;Fmr1-202;Fmr1-208,Fmr1;Fmr1;Fmr1;Fmr1;Fmr1;Fmr1;Fmr1;Fmr1,0;33653;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,8,14265,ENSMUSG00000000838,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18000,cg08257516,0.0000281,0.000011,2.546133862,0.011375963,gain,ns,0.0000752,0.0000188,4.010472779,0.000076,pos,ns,0.017400117,0.005493977,3.167126149,0.001692827,pos,ns,2.771387362,-0.000100879,0.000188937,-0.533929448,0.593772999,neg,ns,0.257550202,Arx,Arx_threeUTR,X,93298095,93298144,93298095,93298096,50,+,CGCAATTGCACTCAGCGTGGTATGGTAAAAGTTTGTCCTCCCGTAGATTC,3' UTR,20,93286496,93298357,11862,1,Arx-201,11599,Arx-201;Arx-202,Arx;Arx,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,32,11878,ENSMUSG00000035277,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
14966,cg12985822,0.00000405,0.00000995,0.40655798,0.684613196,gain,ns,0.0000678,0.0000169,4.010257707,0.0000761,pos,ns,-0.004295858,0.004953461,-0.867243694,0.386479292,neg,ns,0.412873772,0.000439442,0.000170349,2.579655729,0.010350171,pos,ns,0.726857333,Ptprd,Ptprd_Exon,4,78214015,78214064,78214015,78214016,50,+,CGCAGGAAGCTTTTAACAAGATGCAGCTGAGCGTGTCGATATCTTATATC,Promoter (2-3kb),4,77351290,78211961,860672,2,Ptprd-210,-2054,Ptprd-205;Ptprd-211;Ptprd-209;Ptprd-215;Ptprd-210;Ptprd-207;Ptprd-208,Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,13,32,19266,ENSMUSG00000028399,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2535,cg22036689,0.0000274,0.0000128,2.144126789,0.032800178,gain,ns,0.0000872,0.0000217,4.009124751,0.0000764,pos,ns,0.016713571,0.006371467,2.623190552,0.009141756,pos,ns,2.038970386,-0.00059583,0.000219114,-2.719265117,0.006911454,neg,ns,0.585867195,Elmo1,Elmo1_Intron,13,20354135,20354184,20354135,20354136,50,-,CGACATAATTACAGGACAGTGTGTAATGTGCAATTAAACTTAACTATGAA,"Intron (Elmo1-201/Elmo1, intron 14 of 21)",13,20090619,20608353,517735,1,Elmo1-201,263516,Elmo1-201;Elmo1-207,Elmo1;Elmo1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,4,140580,ENSMUSG00000041112,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17284,cg23094735,-0.0000019,0.00000502,-0.377863778,0.705790384,loss,ns,0.0000342,0.00000853,4.007386361,0.0000769,pos,ns,0.00312242,0.002499054,1.249440941,0.212446375,pos,ns,0.672750674,0.0000478,0.0000859,0.555827193,0.578729919,pos,ns,0.882772253,Cks1b,Cks1b_threeUTR,3,89416271,89416320,89416319,89416320,50,-,GACCTGGTTCATGGATCATATAATGGACCCATCCCTGACTCTGCTGAACG,3' UTR,3,89415472,89418383,2912,2,Cks1b-201,2063,Cks1b-201;Cks1b-202;Cks1b-203;Flad1-201;Flad1-204;Flad1-202;Flad1-203;Flad1-205;Shc1-201;Shc1-204;Shc1-210;Shc1-209;Shc1-205;Shc1-203;Shc1-208,Cks1b;Cks1b;Cks1b;Flad1;Flad1;Flad1;Flad1;Flad1;Shc1;Shc1;Shc1;Shc1;Shc1;Shc1;Shc1,0;0;0;-4401;-4408;-4402;-4490;-4401;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,1,54124,ENSMUSG00000028044,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27937,cg26334717,-0.000021,0.0000137,-1.525014644,0.128274972,loss,ns,0.0000935,0.0000233,4.005610578,0.0000775,pos,ns,0.014631932,0.006837536,2.139942327,0.033139805,pos,ns,1.479650051,-0.00016725,0.000235142,-0.711270625,0.477451393,neg,ns,0.732696917,Rps6kc1,Rps6kc1_Intergenic_downstream,1,190690916,190690965,190690916,190690917,50,-,CGAGGCAGTGCTGCAGCTGCCAGGCAATAACTTAGATAGTTACAGCTGCC,Distal Intergenic,1,190808888,190810463,1576,2,Rps6kc1-207,119547,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,14,29,320119,ENSMUSG00000089872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18128,cg23701418,0.000170089,0.0000101,16.76265466,2.41E-45,gain,yes,-0.000069,0.0000172,-4.003286089,0.0000782,neg,ns,0.0025686,0.005050228,0.508610685,0.611386905,pos,ns,0.213683867,-0.000101263,0.000173677,-0.583052597,0.56028179,neg,ns,0.255410211,Spag9,Spag9_Exon,11,94044436,94044485,94044484,94044485,50,+,CTTAGTATCTCTCTCTGTTTTGCTGCTTGTGCACTTTTCTATTTCTACCG,"Exon (Spag9-207/Spag9, exon 1 of 16)",11,93996103,94050649,54547,1,Spag9-208,48333,Spag9-209;Spag9-208;Spag9-202;Spag9-212;Spag9-207;Spag9-206;Spag9-203;Spag9-204;Spag9-205;Spag9-201,Spag9;Spag9;Spag9;Spag9;Spag9;Spag9;Spag9;Spag9;Spag9;Spag9,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,6,70834,ENSMUSG00000020859,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
11021,cg19633001,0.000000661,0.0000183,0.036176739,0.971164717,gain,ns,0.000124301,0.0000311,4.003027817,0.0000783,pos,ns,0.032321989,0.009097094,3.553001591,0.000440117,pos,ns,3.356431595,-0.000547962,0.000312848,-1.751526261,0.080844212,neg,ns,0.209271513,Mbip,Mbip_Intergenic_downstream,12,56302074,56302123,56302122,56302123,50,-,ATGATGTGGGGTTTTCGATAAGTGCCTCATCAGTATCCTCATCATGCTCG,Distal Intergenic,12,56340511,56345821,5311,2,Mbip-202,43747,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,12,13,217588,ENSMUSG00000021028,conserved gene and region,12,56302089,56302194,106,*,106,9,0.566037736,1.07918552,0.08490566,0.0000015,CpGisland,TRUE,U2,Pr-W
8820,cg23333310,0.000131562,0.0000116,11.32887356,3.97E-25,gain,yes,-0.0000789,0.0000197,-3.999960504,0.0000793,neg,ns,0.027447177,0.005779884,4.748741952,0.00000313,pos,ns,5.504008296,-0.000964618,0.00019877,-4.852943051,0.00000193,neg,ns,0.760248699,Clint1,Clint1_Intron,11,45886658,45886707,45886658,45886659,50,-,CGAGTGCAGAATCCAAGACGTGGGGCCCTAGAGTATTAATTAGTGAAGAC,"Intron (Clint1-201/Clint1, intron 4 of 11)",11,45851964,45910625,58662,1,Clint1-201,34694,Clint1-201;Clint1-202;Clint1-203,Clint1;Clint1;Clint1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,7,216705,ENSMUSG00000006169,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14312,cg10616581,0.00012783,0.0000174,7.345202808,1.83E-12,gain,yes,-0.000118244,0.0000296,-3.999353067,0.0000795,neg,ns,0.027430027,0.008661758,3.166796907,0.001694684,pos,ns,2.770911254,-0.001042459,0.000297877,-3.499626779,0.000534194,neg,ns,0.359321696,Smg6,Smg6_Intron,11,75147350,75147399,75147398,75147399,50,-,ATATGCGTGAACCCTGGAGTCTGTGCCGAGGTGGCTGTAAAACAGGGCCG,"Intron (Smg6-201/Smg6, intron 15 of 18)",11,74925823,75164448,238626,1,Smg6-201,221527,Smg6-201;Smg6-202,Smg6;Smg6,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,34,103677,ENSMUSG00000038290,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24645,cg27582354,0.0000036,0.0000112,0.32036004,0.748911243,gain,ns,-0.0000763,0.0000191,-3.999199794,0.0000795,neg,ns,0.008935327,0.005590086,1.598423838,0.1109674,pos,ns,0.954804591,-0.000688902,0.000192243,-3.583501387,0.000393581,neg,ns,0.918837717,R3hdm2,R3hdm2_threeUTR,10,127458817,127458866,127458865,127458866,50,+,TTCAAGAAGTTCCCTCAGATGACCTCATATCACCGGATGCTATTACACCG,3' UTR,10,127380662,127499360,118699,1,R3hdm2-212,78155,R3hdm2-212;R3hdm2-202;R3hdm2-204;R3hdm2-201;R3hdm2-218;R3hdm2-208;R3hdm2-210;R3hdm2-205;R3hdm2-203;R3hdm2-211;R3hdm2-207;R3hdm2-216;R3hdm2-221,R3hdm2;R3hdm2;R3hdm2;R3hdm2;R3hdm2;R3hdm2;R3hdm2;R3hdm2;R3hdm2;R3hdm2;R3hdm2;R3hdm2;R3hdm2,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,8,71750,ENSMUSG00000025404,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25072,cg24187520,-0.0000283,0.0000107,-2.645833706,0.008564654,loss,ns,-0.0000725,0.0000181,-3.99843873,0.0000798,neg,ns,0.022838264,0.005314367,4.29745672,0.0000232,pos,ns,4.63529702,-0.000976322,0.000182761,-5.342078556,0.000000178,neg,yes,0.89965478,Rbbp5,Rbbp5_Exon,1,132498035,132498084,132498035,132498036,50,-,CGAAACTCTACAAAGGGGACAGAGGTTTACCTCTGGAAGGATCAGCGAAG,"Exon (Rbbp5-206/Rbbp5, exon 13 of 14)",1,132477365,132504490,27126,1,Rbbp5-206,20670,Rbbp5-206;Rbbp5-207;Rbbp5-202;Rbbp5-201,Rbbp5;Rbbp5;Rbbp5;Rbbp5,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,213464,ENSMUSG00000026439,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24198,cg20121509,0.0000487,0.0000143,3.413452085,0.000726716,gain,ns,-0.0000969,0.0000242,-3.997820546,0.00008,neg,ns,0.021824189,0.007100071,3.07379848,0.002301375,pos,ns,2.63801257,-0.000968955,0.000244171,-3.968349947,0.00009,neg,ns,0.735412031,Pabpc4,Pabpc4_threeUTR,4,123295714,123295763,123295762,123295763,50,+,CGCCAACACTGATGTGCATTTGCTGGTCTGTTGTAGGGTCTGAGTGCCCG,3' UTR,4,123282825,123298925,16101,1,Pabpc4-204,12889,Pabpc4-204;Pabpc4-203;Pabpc4-208;Pabpc4-202;Pabpc4-201;Pabpc4-205;Pabpc4-206,Pabpc4;Pabpc4;Pabpc4;Pabpc4;Pabpc4;Pabpc4;Pabpc4,0;0;0;0;0;0;-1417,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,5,230721,ENSMUSG00000011257,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14876,cg11125928,0.0000222,0.00000375,5.937045326,7.77E-09,gain,yes,-0.0000254,0.00000636,-3.994468901,0.000081,neg,ns,-0.004177335,0.001864486,-2.240475879,0.025768143,neg,ns,1.588916874,0.0000749,0.0000641,1.167577957,0.243874293,pos,ns,0.904625893,Flot2,Flot2_fiveUTR,11,78053346,78053395,78053394,78053395,50,+,CCCTGGCTGCTCCTCAGACTGTCTCTGGAGGTTATGACCATCCTGTGTCG,5' UTR,11,78037931,78060434,22504,1,Flot2-201,15415,Flot2-201;Flot2-205;Flot2-203;Flot2-202;Flot2-204,Flot2;Flot2;Flot2;Flot2;Flot2,0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,9,13,14252,ENSMUSG00000061981,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12232,cg24399485,0.0000327,0.0000068,4.812558313,0.00000233,gain,ns,-0.0000462,0.0000116,-3.994618535,0.000081,neg,ns,0.018353088,0.003386212,5.419947281,0.00000012,pos,ns,6.920845928,-0.000462777,0.000116452,-3.973986609,0.000088,neg,ns,0.858574959,Ptch1,Ptch1_Intron,13,63554647,63554696,63554695,63554696,50,-,GGAGGTAAGCTTTGGCGGCCCTGACCTGCAGCTGGAACACAATACTTTCG,"Intron (Ptch1-201/Ptch1, intron 2 of 22)",13,63508328,63565735,57408,2,Ptch1-201,11039,Ptch1-201;Ptch1-204;Ptch1-206;Ptch1-202;Ptch1-207;Ptch1-203;Ptch1-205,Ptch1;Ptch1;Ptch1;Ptch1;Ptch1;Ptch1;Ptch1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,36,19206,ENSMUSG00000021466,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11670,cg26808264,0.000187086,0.0000117,15.96733513,2.67E-42,gain,yes,-0.0000795,0.0000199,-3.99428772,0.0000811,neg,ns,-0.020936546,0.005831554,-3.590217232,0.000383975,neg,ns,3.41569756,0.000564548,0.000200547,2.815047915,0.00518913,pos,ns,0.600976629,Tanc1,Tanc1_Exon,2,59772421,59772470,59772421,59772422,50,-,CGATAGCCCCTGCTCAACCTTGAATAGCTGTGTCAGCAAGACGGCAGCCA,"Exon (Tanc1-203/Tanc1, exon 7 of 27)",2,59612042,59845717,233676,1,Tanc1-203,160379,Tanc1-203;Tanc1-201;Tanc1-208;Tanc1-202;Tanc1-204,Tanc1;Tanc1;Tanc1;Tanc1;Tanc1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,66860,ENSMUSG00000035168,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19341,cg11122179,-0.0000284,0.00000666,-4.259257989,0.0000272,loss,ns,0.0000452,0.0000113,3.994191469,0.0000811,pos,ns,-0.003404946,0.003315591,-1.02694997,0.305244658,neg,ns,0.515351928,0.000209329,0.000114023,1.835853388,0.067337004,pos,ns,0.854872528,Cdh8,Cdh8_threeUTR,8,99030801,99030850,99030801,99030802,50,+,CGACATCAACACCATTTGGAACTGGAGCAAGCCCTTGCCTTGGCATAAAC,3' UTR,8,99024471,99416427,391957,2,Cdh8-207,385577,Cdh8-207;Cdh8-204;Cdh8-201;Cdh8-206;Cdh8-203,Cdh8;Cdh8;Cdh8;Cdh8;Cdh8,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,16,12564,ENSMUSG00000036510,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2916,cg19057807,0.0000578,0.00000401,14.41591959,2.07E-36,gain,yes,-0.0000272,0.00000681,-3.994099525,0.0000812,neg,ns,-0.00298632,0.001994048,-1.49761723,0.13525023,neg,ns,0.868861988,0.000174493,0.0000686,2.544551042,0.011426567,pos,ns,0.928908723,Ehbp1,Ehbp1_Intron,11,22053379,22053428,22053427,22053428,50,-,TTTGTGAACGCTCAATTTGCCAAAACTGTTTACAGTGTAATTGGGCACCG,"Intron (Ehbp1-201/Ehbp1, intron 20 of 23)",11,22005828,22285838,280011,2,Ehbp1-201,232410,Ehbp1-201;Ehbp1-202;Ehbp1-207,Ehbp1;Ehbp1;Ehbp1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,34,45,216565,ENSMUSG00000042302,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15918,cg26885075,-0.0000385,0.0000049,-7.857826679,6.49E-14,loss,yes,0.0000333,0.00000833,3.993486511,0.0000814,pos,ns,0.001964621,0.00243992,0.805199057,0.421321965,pos,ns,0.375385899,-0.000031,0.0000839,-0.369170563,0.712252621,neg,ns,0.884998074,Gm5452,Gm5452_Intron,13,83869284,83869333,83869284,83869285,50,-,CGGTTCACAGACCTCTTGAAGGAAAGTTTGTTTTCCACTCATAGATGAAA,"Intron (C130071C03Rik-204/C130071C03Rik-204, intron 3 of 3)",13,83832340,83833336,997,1,Gm5452-201,36993,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,16,432789,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19812,cg08477918,0.000153431,0.0000158,9.739776395,9.88E-20,gain,yes,-0.000106866,0.0000268,-3.993146941,0.0000815,neg,ns,0.071977662,0.007840469,9.18027471,6.28E-18,pos,yes,17.20226099,-0.001435466,0.000269633,-5.323775467,0.000000195,neg,yes,0.72672551,Fchsd2,Fchsd2_Exon,7,101246313,101246362,101246313,101246314,50,-,CGCCCAACTGGTGGATATTGAGCTCTCCCCTGTCAGTGCTCTGAGAATGA,"Exon (Fchsd2-201/Fchsd2, exon 11 of 21)",7,101108733,101284405,175673,1,Fchsd2-201,137580,Fchsd2-201;Fchsd2-202;Fchsd2-207;Fchsd2-210,Fchsd2;Fchsd2;Fchsd2;Fchsd2,0;0;0;-4480,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,207278,ENSMUSG00000030691,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24908,cg05759182,-0.00000225,0.00000129,-1.751176043,0.08090461,loss,ns,0.00000873,0.00000219,3.992990929,0.0000815,pos,ns,0.00148051,0.000640631,2.311018879,0.021487653,pos,ns,1.667811023,-0.0000294,0.000022,-1.335666637,0.182638052,neg,ns,0.050641948,Sfswap,Sfswap_Exon,5,129501543,129501592,129501591,129501592,50,+,ACAGGGACAGCACCTCATCCCCTGGATGGGGGACCACAAGATCCTCATCG,Promoter (<=1kb),5,129501221,129571384,70164,1,Sfswap-201,322,Sfswap-201;Sfswap-204;Sfswap-212;Sfswap-213;Sfswap-214;Sfswap-208;Sfswap-203;Sfswap-215,Sfswap;Sfswap;Sfswap;Sfswap;Sfswap;Sfswap;Sfswap;Sfswap,0;0;0;0;0;0;0;-2749,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,5,231769,ENSMUSG00000029439,conserved gene and region,5,129501591,129502227,637,*,637,65,0.681318681,0.879367102,0.102040816,4.10E-50,CpGisland,TRUE,U1,Pr-A
8875,cg23927870,0.0000408,0.00000452,9.022693512,1.97E-17,gain,yes,-0.0000307,0.00000768,-3.992373468,0.0000817,neg,ns,0.012497966,0.002249345,5.556267758,5.94E-08,pos,ns,7.226199041,-0.000171651,0.0000774,-2.219005174,0.027210189,neg,ns,0.905948317,Gbf1,Gbf1_Intron,19,46173749,46173798,46173797,46173798,50,-,ACGGAGTGTGTTTGATCAGGTGTGGCAGGAATATCCACTGTCAAGCTGCG,"Intron (Gbf1-201/Gbf1, intron 3 of 39)",19,46152509,46286510,134002,1,Gbf1-201,21240,Gbf1-201;Gbf1-204;Gbf1-214;Gbf1-207;Gbf1-216,Gbf1;Gbf1;Gbf1;Gbf1;Gbf1,0;0;0;0;21169,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,18,107338,ENSMUSG00000025224,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13473,cg14261993,-0.00000288,0.00000443,-0.649892849,0.516242723,loss,ns,-0.00003,0.00000752,-3.99037331,0.0000824,neg,ns,-0.002444301,0.002203489,-1.109286762,0.268166286,neg,ns,0.571595822,-0.000142141,0.0000758,-1.875761344,0.06162769,neg,ns,0.875665619,Xpo7,Xpo7_Intron,14,70684707,70684756,70684755,70684756,50,+,CTAAGCACAGCTTGTCACACACTCAAATGCACAATTTTCTGACGCAAACG,"Intron (Xpo7-202/Xpo7, intron 15 of 27)",14,70654246,70766628,112383,2,Xpo7-202,81872,Xpo7-202;Xpo7-201;Xpo7-206;Xpo7-203;Xpo7-204;Xpo7-205,Xpo7;Xpo7;Xpo7;Xpo7;Xpo7;Xpo7,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,13,65246,ENSMUSG00000022100,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4967,cg06444905,-0.0000286,0.00000973,-2.934223079,0.003593446,loss,ns,-0.000066,0.0000165,-3.98918578,0.0000828,neg,ns,0.01087225,0.004845009,2.244010498,0.025537226,pos,ns,1.592826287,-0.000667571,0.000166619,-4.006558749,0.0000772,neg,ns,0.78909519,Fubp3,Fubp3_threeUTR,2,31596583,31596632,31596631,31596632,50,-,TCTTCTTATAGAGAGTTCTGGGATTCCAGAGAGGCCCTGTGTACTTACCG,3' UTR,2,31572651,31617526,44876,1,Fubp3-202,23932,Fubp3-202;Fubp3-208;Fubp3-211;Fubp3-201;Fubp3-210,Fubp3;Fubp3;Fubp3;Fubp3;Fubp3,0;23792;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,2,320267,ENSMUSG00000026843,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11463,cg25517295,-0.0000595,0.0000112,-5.299003472,0.000000221,loss,yes,-0.0000761,0.0000191,-3.988851929,0.0000829,neg,ns,0.029126194,0.005591027,5.209453129,0.000000346,pos,ns,6.460854273,-0.00133074,0.000192275,-6.921023592,2.58E-11,neg,yes,0.738899343,Hnrnpk,Hnrnpk_fiveUTR,13,58397883,58397932,58397883,58397884,50,-,CGAGCACATTTTTGGGCATAGCCAACCAGGGTTTTCACATGGGCGTTCAG,5' UTR,13,58391142,58403343,12202,2,Hnrnpk-202,5411,Hnrnpk-202;Hnrnpk-224;Hnrnpk-221;Hnrnpk-232;Hnrnpk-216;Hnrnpk-201;Hnrnpk-205;Hnrnpk-217;Hnrnpk-206;Hnrnpk-209;Hnrnpk-213;Hnrnpk-227;Hnrnpk-234;Hnrnpk-233;Hnrnpk-228;Hnrnpk-214;Hnrnpk-215;Hnrnpk-211;Hnrnpk-208;Hnrnpk-212;Hnrnpk-231;Hnrnpk-230;Hnrnpk-203;Hnrnpk-218;Hnrnpk-226;Hnrnpk-207;Hnrnpk-219;Hnrnpk-225;Hnrnpk-229;Hnrnpk-223;Hnrnpk-220;Hnrnpk-210;Hnrnpk-204;Hnrnpk-222;Rmi1-205;Rmi1-201;Rmi1-204,Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Rmi1;Rmi1;Rmi1,0;0;0;0;0;0;0;-4015;-3098;-3908;-2685;-3799;-3994;-3713;-3187;0;-2163;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;4570;4123;-4316;-4331;-4768,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,10,19,15387,ENSMUSG00000021546,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6840,cg18224101,-0.00000287,0.00000363,-0.790203263,0.43001312,loss,ns,-0.0000246,0.00000616,-3.988307771,0.0000831,neg,ns,-0.000166352,0.001805235,-0.092149983,0.926638397,neg,ns,0.033089708,-0.0000868,0.0000621,-1.398663231,0.162913625,neg,ns,0.880587403,Nr6a1,Nr6a1_Exon,2,38738997,38739046,38738997,38738998,50,+,CGTAGAGCTCAAGAGGCACGTGTAATCCTTGATTGAGAGCTCGCAGAAGA,"Exon (Nr6a1-202/Nr6a1, exon 9 of 12)",2,38723370,38927688,204319,2,Nr6a1-202,188642,Nr6a1-202;Nr6a1-210;Nr6a1-201;Nr6a1-204;Nr6a1-205;Nr6a1-207;Nr6a1-206;Nr6a1-208;Nr6a1-209;Nr6a1-211,Nr6a1;Nr6a1;Nr6a1;Nr6a1;Nr6a1;Nr6a1;Nr6a1;Nr6a1;Nr6a1;Nr6a1,0;0;0;0;0;45474;46065;0;45423;24719,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,12,14536,ENSMUSG00000063972,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13150,cg07900685,0.0000107,0.0000035,3.056121627,0.002437199,gain,ns,-0.0000237,0.00000595,-3.985189526,0.0000841,neg,ns,-0.003753831,0.001743754,-2.152729965,0.032111309,neg,ns,1.493341986,0.0000228,0.00006,0.380102054,0.70412995,pos,ns,0.82779359,Ikzf2,Ikzf2_Exon,1,69577793,69577842,69577841,69577842,50,-,TTTTATGTACCATAAGCACATTGGGCCCAATGCAAACCATGCCACAGACG,"Exon (Ikzf2-201/Ikzf2, exon 4 of 8)",1,69531214,69685821,154608,2,Ikzf2-201,107979,Ikzf2-201;Ikzf2-207;Ikzf2-202;Ikzf2-204;Ikzf2-208;Ikzf2-209;Ikzf2-206,Ikzf2;Ikzf2;Ikzf2;Ikzf2;Ikzf2;Ikzf2;Ikzf2,0;0;0;0;0;0;107458,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,14,22779,ENSMUSG00000025997,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13951,cg26399970,0.0000363,0.0000164,2.208936968,0.02791017,gain,ns,0.000111201,0.0000279,3.984836668,0.0000842,pos,ns,0.034412605,0.008175535,4.209217663,0.0000336,pos,ns,4.473569916,-0.000835525,0.000281156,-2.971748515,0.003192882,neg,ns,0.417920605,Slc6a8,Slc6a8_fiveUTR,X,73673531,73673580,73673531,73673532,50,-,CGGGCCCCCGACACACATGAGATTCTTCAGGCTCACTTTCAAGTGCTTCG,Promoter (<=1kb),20,73673150,73682502,9353,1,Slc6a8-201,381,Slc6a8-201;Slc6a8-204;Slc6a8-206;Slc6a8-203;Slc6a8-205;Slc6a8-210;Slc6a8-213;Slc6a8-202;Slc6a8-209;Slc6a8-212,Slc6a8;Slc6a8;Slc6a8;Slc6a8;Slc6a8;Slc6a8;Slc6a8;Slc6a8;Slc6a8;Slc6a8,0;0;0;0;0;0;0;0;-3479;-4574,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,4,102857,ENSMUSG00000019558,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
26862,cg00897651,0.00000237,0.00000186,1.275276415,0.203166298,gain,ns,0.0000126,0.00000315,3.984544748,0.0000843,pos,ns,0.002363009,0.000923574,2.558549875,0.0109859,pos,ns,1.959164368,0.0000117,0.0000318,0.368239318,0.712946118,pos,ns,0.052568787,4930404H24Rik,4930404H24Rik_Promoter,2,153492894,153492943,153492942,153492943,50,+,TTAGATACCAGCTGTCAGTGCAGGGGGGACGGCTCCGCGGCTGCAGCCCG,Promoter (<=1kb),2,153492790,153493841,1052,1,4930404H24Rik-201,104,4930404H24Rik-201;Nol4l-201;Nol4l-203,4930404H24Rik;Nol4l;Nol4l,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,1,4,78151,NA,mapped to different genes,2,153492923,153493123,201,*,201,27,0.776119403,0.892598684,0.134328358,1.13E-24,CpGisland,TRUE,NA,NRS
17991,cg21426639,0.0000167,0.0000144,1.165399613,0.244753195,gain,ns,0.0000972,0.0000244,3.980407138,0.0000857,pos,ns,0.020710113,0.007151126,2.89606324,0.004047411,pos,ns,2.392822676,-0.000304918,0.000245927,-1.239874478,0.215959543,neg,ns,0.381643035,Arx,Arx_Promoter,X,93282789,93282838,93282837,93282838,50,+,ATTGTTGTTTTCTCTCTCTCTTTCTCTCCTCCTAACACTGCAATAACGCG,Promoter (3-4kb),20,93286445,93288382,1938,1,Arx-203,-3607,Arx-203;Arx-201;Arx-202,Arx;Arx;Arx,-3607;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,7,32,11878,ENSMUSG00000035277,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
5625,cg18128160,-0.0000284,0.00000649,-4.379386941,0.0000163,loss,ns,-0.0000439,0.000011,-3.979081688,0.0000862,neg,ns,0.00923527,0.003230045,2.859176786,0.004535355,pos,ns,2.34338867,-0.000365109,0.000111081,-3.286871963,0.001129365,neg,ns,0.806360405,Fam193a,Fam193a_Exon,5,34410699,34410748,34410699,34410700,50,-,CGAGCAAATTGGCCCTTTCCATGGCTCCCAAGGGCAACAGCGTGCTGCAC,"Exon (Fam193a-202/Fam193a, exon 2 of 21)",5,34369933,34486456,116524,1,Fam193a-202,40766,Fam193a-202,Fam193a,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,4,231128,ENSMUSG00000037210,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
10975,cg08262939,-0.000033,0.0000132,-2.490499283,0.013279646,loss,ns,0.0000895,0.0000225,3.978187483,0.0000865,pos,ns,0.000581779,0.006588742,0.088298949,0.929696088,pos,ns,0.031658997,0.0000607,0.000226586,0.267726245,0.789088089,pos,ns,0.52481787,Brms1l,Brms1l_Intergenic_downstream,12,55939695,55939744,55939695,55939696,50,+,CGTTGCTATAGCAACAGAATCTGCCTCCCAGCACCACAAGAGAAGCTATG,Distal Intergenic,12,55844192,55865983,21792,1,Brms1l-206,95503,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,2,52592,ENSMUSG00000012076,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15939,cg16242270,0.0000188,0.0000111,1.682337687,0.093510297,gain,ns,0.0000753,0.0000189,3.977867421,0.0000866,pos,ns,0.00245545,0.00554807,0.442577251,0.658380182,pos,ns,0.18152325,0.000124429,0.000190798,0.652150649,0.514787237,pos,ns,0.774214319,Dmd,Dmd_Exon,X,83928886,83928935,83928886,83928887,50,+,CGCAATGGCAGTGGAGCCAACTCAGATCCAGCTCAGCAAGCGCTGGCGGG,"Exon (Dmd-203/Dmd, exon 41 of 79)",20,82948903,85206141,2257239,1,Dmd-203,979983,Dmd-203;Dmd-215;Dmd-209,Dmd;Dmd;Dmd,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,20,28,13405,ENSMUSG00000045103,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27097,cg16384274,0.0000162,0.00000526,3.073853676,0.002300962,gain,ns,-0.0000355,0.00000893,-3.976659036,0.000087,neg,ns,0.009601152,0.002615505,3.670859743,0.000284562,pos,ns,3.545823758,-0.000318748,0.0000899,-3.543730996,0.000455255,neg,ns,0.894044052,Srsf11,Srsf11_Exon,3,158026740,158026789,158026740,158026741,50,+,CGACTATCAAAGCTCTGTCAACGAATACAGTGTTTGTCAGATGCTGTGCC,"Exon (Srsf11-204/Srsf11, exon 3 of 13)",3,158010473,158036639,26167,2,Srsf11-204,9850,Srsf11-204;Srsf11-213;Srsf11-202;Srsf11-207;Srsf11-201;Srsf11-217;Srsf11-218;Srsf11-206;Srsf11-209;Srsf11-210;Srsf11-212;Srsf11-203;Srsf11-208;Srsf11-215;Srsf11-219;Srsf11-216,Srsf11;Srsf11;Srsf11;Srsf11;Srsf11;Srsf11;Srsf11;Srsf11;Srsf11;Srsf11;Srsf11;Srsf11;Srsf11;Srsf11;Srsf11;Srsf11,0;0;0;-3600;0;-4736;0;0;0;0;0;0;0;0;4965;9825,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,8,69207,ENSMUSG00000055436,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19837,cg24618784,0.00000838,0.00000654,1.281351663,0.201027808,gain,ns,0.0000442,0.0000111,3.975171161,0.0000876,pos,ns,0.004076212,0.003255662,1.252037669,0.211499956,pos,ns,0.674689718,-0.000148394,0.000111962,-1.325398465,0.186014981,neg,ns,0.749254556,Nlgn3,Nlgn3_fiveUTR,X,101301874,101301923,101301874,101301875,50,+,CGAGAGCTCAGTTTTGAGGTTCAAGTCAGTGTGGCCATGAAGGGGCTGCC,5' UTR,20,101299168,101325963,26796,1,Nlgn3-202,2706,Med12-204;Med12-203;Med12-201;Med12-202;Med12-208;Med12-206;Nlgn3-202;Nlgn3-203;Nlgn3-206;Nlgn3-201;Nlgn3-205,Med12;Med12;Med12;Med12;Med12;Med12;Nlgn3;Nlgn3;Nlgn3;Nlgn3;Nlgn3,0;0;0;0;0;5305;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,16,245537,ENSMUSG00000031302,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17292,cg09025625,0.0000659,0.0000097,6.797944358,5.45E-11,gain,yes,-0.0000654,0.0000165,-3.971234294,0.0000889,neg,ns,0.005724151,0.004827791,1.185666641,0.236661998,pos,ns,0.625871473,-0.0001944,0.000166027,-1.170889915,0.242542281,neg,ns,0.277211909,Shc1,Shc1_fiveUTR,3,89422295,89422344,89422343,89422344,50,+,CTGCATCCCAACGACAAAGTCATGGGACCCGGGGTTTCCTACTTGGTTCG,5' UTR,3,89418443,89430015,11573,1,Shc1-201,3852,Cks1b-201;Cks1b-202;Cks1b-203;Shc1-201;Shc1-204;Shc1-210;Shc1-209;Shc1-205;Shc1-203;Shc1-208;Shc1-202;Shc1-206;Shc1-207,Cks1b;Cks1b;Cks1b;Shc1;Shc1;Shc1;Shc1;Shc1;Shc1;Shc1;Shc1;Shc1;Shc1,0;0;0;0;0;0;0;0;0;0;0;0;-2182,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,3,20416,ENSMUSG00000042626,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U4,Pr-F
23370,cg21298229,-0.00000488,0.0000121,-0.403324265,0.686987732,loss,ns,0.0000817,0.0000206,3.970747574,0.0000891,pos,ns,-0.002225046,0.006025729,-0.369257513,0.712187881,neg,ns,0.147405421,0.0000937,0.000207224,0.45210039,0.65151284,pos,ns,0.652528955,Sox21,Sox21_Intergenic_downstream,14,118194626,118194675,118194674,118194675,50,-,CCCGCTGTATCTTCATTTTTCATTGAACTAGCCAGTTTTCTGCGAAGCCG,Distal Intergenic,14,118233232,118237030,3799,2,Sox21-201,42404,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,26,27,223227,ENSMUSG00000061517,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
24788,cg22192672,0.0000625,0.0000119,5.259925547,0.000000269,gain,yes,-0.0000802,0.0000202,-3.970096569,0.0000894,neg,ns,0.004361452,0.005918486,0.736920236,0.461728198,pos,ns,0.335613602,-0.000597613,0.000203536,-2.936152233,0.003571782,neg,ns,0.182061659,Smarcc2,Smarcc2_Promoter,10,128458485,128458534,128458533,128458534,50,-,CTGTGCGGGGAAACCCCATTGGATTTCGAGTCCAACGCCTTAACCACTCG,Promoter (<=1kb),10,128459248,128490482,31235,1,Smarcc2-205,-763,Smarcc2-205;Smarcc2-201;Smarcc2-202;Smarcc2-203;Smarcc2-206,Smarcc2;Smarcc2;Smarcc2;Smarcc2;Smarcc2,0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,6,16,68094,ENSMUSG00000025369,conserved gene and region,10,128458453,128458841,389,*,389,38,0.645244216,0.938658877,0.097686375,9.20E-29,CpGisland,TRUE,U2,Pr-W
23607,cg09786645,0.0000661,0.0000122,5.422160799,0.000000119,gain,yes,0.0000822,0.0000207,3.968255992,0.00009,pos,ns,0.028237573,0.006071773,4.650630391,0.00000491,pos,ns,5.309290557,-0.000590336,0.000208808,-2.827173345,0.005001454,neg,ns,0.203388407,Dll4,Dll4_Promoter,2,119322230,119322279,119322230,119322231,50,-,CGGCATCTGTCCCAGGCGGGCGGGAAGCTGCTGCATTAAATTGTAAAATC,Promoter (3-4kb),2,119325784,119335962,10179,1,Dll4-201,-3554,Dll4-201,Dll4,0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,8,20,54485,ENSMUSG00000027314,conserved gene and region,2,119322082,119322448,367,*,367,37,0.632152589,1.026301867,0.100817439,1.47E-28,CpGisland,TRUE,U3,Pr-B
3803,cg15576772,0.0000272,0.00000402,6.772886468,6.34E-11,gain,yes,-0.0000271,0.00000682,-3.967379733,0.0000903,neg,ns,-0.006860372,0.001999241,-3.43148818,0.000681727,neg,ns,3.166389513,0.0000955,0.0000688,1.38931925,0.16573279,pos,ns,0.915660005,Celf4,Celf4_threeUTR,18,25481726,25481775,25481726,25481727,50,+,CGCCATCATGTCACACTGTGAACTTTGAGTTGATTTGAACTTACGGATGG,3' UTR,18,25477632,25753983,276352,2,Celf4-202,272208,Celf4-202;Celf4-201;Celf4-203;Celf4-207;Celf4-206;Celf4-208;Celf4-204,Celf4;Celf4;Celf4;Celf4;Celf4;Celf4;Celf4,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,59,108013,ENSMUSG00000024268,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5781,cg07241706,0.00000459,0.00000217,2.116238809,0.035121299,gain,ns,-0.0000146,0.00000368,-3.966995179,0.0000905,neg,ns,-0.001306001,0.001079299,-1.210044604,0.227183651,neg,ns,0.643622925,-0.0000174,0.0000371,-0.468510654,0.639748718,neg,ns,0.919010303,Gapvd1,Gapvd1_Exon,2,34706705,34706754,34706753,34706754,50,-,AACACTGAGGCCTGGTGTGCTGGGGCGGGAACTGACCTCCCTGACATCCG,"Exon (Gapvd1-202/Gapvd1, exon 13 of 27)",2,34674594,34755232,80639,2,Gapvd1-202,48478,Gapvd1-202;Gapvd1-206;Gapvd1-201;Gapvd1-203;Gapvd1-204;Gapvd1-213;Gapvd1-208;Gapvd1-205;Gapvd1-207;Gapvd1-211;Gapvd1-212,Gapvd1;Gapvd1;Gapvd1;Gapvd1;Gapvd1;Gapvd1;Gapvd1;Gapvd1;Gapvd1;Gapvd1;Gapvd1,0;0;0;0;0;0;0;0;0;0;5975,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,66691,ENSMUSG00000026867,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4050,cg23025641,-0.0000294,0.0000099,-2.968533387,0.003225528,loss,ns,0.0000667,0.0000168,3.966240188,0.0000907,pos,ns,0.000192821,0.004929322,0.039117152,0.968822166,pos,ns,0.013755934,0.0000382,0.000169519,0.225364128,0.821844509,pos,ns,0.844423039,Gm45647,Gm45647_Intergenic_upstream,8,26661167,26661216,26661215,26661216,50,-,AATGGCCAGTTTATTAGAGCGTTAACCATCCTTGGCAATGGGCTGAGTCG,Distal Intergenic,8,26780315,26780509,195,1,Gm45647-201,-119148,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,46,62,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15021,cg11275232,0.00000652,0.00000372,1.750430125,0.081033373,gain,ns,-0.0000251,0.00000633,-3.964138655,0.0000915,neg,ns,0.002562741,0.00185305,1.382985802,0.167664517,pos,ns,0.775558838,-0.0000491,0.0000637,-0.770130506,0.441808956,neg,ns,0.893765555,Gphn,Gphn_Exon,12,78522911,78522960,78522911,78522912,50,+,CGGATGAAAGCAAAGGAGTTGCTAGTAGAGTTGGATCCCTCAAAGTAAAT,"Exon (Gphn-201/Gphn, exon 9 of 24)",12,78226379,78684772,458394,1,Gphn-201,296532,Gphn-201;Gphn-202,Gphn;Gphn,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,11,268566,ENSMUSG00000047454,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21288,cg25046890,-0.00000698,0.00000902,-0.773622119,0.439743823,loss,ns,0.0000608,0.0000153,3.963798952,0.0000916,pos,ns,0.014053847,0.004491818,3.128765786,0.001922288,pos,ns,2.716181632,-0.000669436,0.000154473,-4.333671487,0.0000198,neg,ns,0.724508065,Gm5187,Gm5187_Intergenic_downstream,12,107105036,107105085,107105036,107105037,50,+,CGGTTAGGACATACATTATCAAACTTCCACAGTGCGGGGGGCAGGGGGCC,Distal Intergenic,12,107205076,107206066,991,2,Gm5187-201,100981,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,10,382635,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12683,cg18338004,-0.00000267,0.0000154,-0.173684683,0.862226635,loss,ns,0.000103607,0.0000262,3.960075606,0.000093,pos,ns,0.02201576,0.00766484,2.872305266,0.004355863,pos,ns,2.360925745,-0.000494744,0.000263593,-1.876920951,0.061468007,neg,ns,0.725028901,Unc80,Unc80_Exon,1,66606460,66606509,66606508,66606509,50,+,AGGAAGATCAGGATAGGAGGTTCTCGCCTGCTCCAGATTAAAGGAACCCG,"Exon (Unc80-201/Unc80, exon 27 of 65)",1,66468367,66699148,230782,1,Unc80-201,138093,Unc80-201;Unc80-206,Unc80;Unc80,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,9,329178,ENSMUSG00000055567,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2523,cg03005827,0.0000268,0.00000551,4.863903502,0.0000018,gain,yes,-0.000037,0.00000935,-3.959684551,0.0000931,neg,ns,-0.0000596,0.002739972,-0.021738393,0.982670623,neg,ns,0.007592027,0.000126184,0.0000942,1.339147917,0.18150358,pos,ns,0.896428116,Map7,Map7_Exon,10,20250358,20250407,20250406,20250407,50,-,CATTTGTTTTAGATCCAGACAGGCGGTCAGTTTCCACCATGAATCTTTCG,"Exon (Map7-201/Map7, exon 6 of 18)",10,20148471,20281522,133052,1,Map7-201,101887,Map7-201;Map7-202;Map7-206;Map7-208;Map7-209;Map7-204;Map7-203,Map7;Map7;Map7;Map7;Map7;Map7;Map7,0;0;0;79336;78652;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,17761,ENSMUSG00000019996,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19842,cg27218009,0.0000216,0.0000108,1.992357393,0.047208589,gain,ns,0.0000728,0.0000184,3.959741985,0.0000931,pos,ns,0.01491275,0.005384743,2.769445303,0.005953586,pos,ns,2.225221367,-0.000275309,0.000185181,-1.486701233,0.138110078,neg,ns,0.803328411,Nlgn3,Nlgn3_Exon,X,101303077,101303126,101303077,101303078,50,+,CGGATTTCCAAGGAATGCGCCCGAAAGCCCAACAAGAAAATTTGTAGGAA,"Exon (Gm21986-201/Gm21986-201, exon 6 of 11)",20,101299168,101325963,26796,1,Nlgn3-202,3909,Nlgn3-202;Nlgn3-203;Nlgn3-206;Nlgn3-201;Nlgn3-205,Nlgn3;Nlgn3;Nlgn3;Nlgn3;Nlgn3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,16,245537,ENSMUSG00000031302,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9514,cg01810374,-0.000000187,0.00000691,-0.027012949,0.978466787,loss,ns,0.0000465,0.0000117,3.959477961,0.0000932,pos,ns,0.008058948,0.003441403,2.341762298,0.019825859,pos,ns,1.702767988,-0.000232683,0.00011835,-1.966065189,0.050183196,neg,ns,0.742860317,Lrfn2,Lrfn2_Exon,17,49070730,49070779,49070730,49070731,50,+,CGTGAGGAGGAGTTTGTGTGCGAGCCGCCTCTCATCACCCAGCACACACA,"Exon (Lrfn2-201/Lrfn2, exon 2 of 3)",17,48932379,49097588,165210,1,Lrfn2-201,138351,Lrfn2-201,Lrfn2,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,70530,ENSMUSG00000040490,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27570,cg16541327,0.0000243,0.0000366,0.664573937,0.506817085,gain,ns,0.00024601,0.0000621,3.958618974,0.0000935,pos,ns,0.03887018,0.018206467,2.134965573,0.033547671,pos,ns,1.474337624,-0.00060773,0.000626119,-0.970629727,0.332489401,neg,ns,0.483555945,Tshz2,Tshz2_Intron,2,169962214,169962263,169962214,169962215,50,-,CGATGATTTTGACAGAACTCACTTTCCATGTCTAATTTGATGCTAATTTA,"Intron (Tshz2-203/Tshz2, intron 1 of 1)",2,169884893,170071816,186924,1,Tshz2-203,77321,Tshz2-203;Tshz2-205,Tshz2;Tshz2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,21,30,228911,ENSMUSG00000047907,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3559,cg18412623,-0.0000119,0.00000771,-1.547845632,0.122679712,loss,ns,0.0000518,0.0000131,3.95603956,0.0000945,pos,ns,0.00955368,0.003837178,2.489767101,0.013306482,pos,ns,1.875936744,-0.000342234,0.00013196,-2.59346052,0.009952357,neg,ns,0.783969447,Cadm4,Cadm4_Exon,7,24502718,24502767,24502718,24502719,50,-,CGGCATCCTGGCGCTGCTGGTGTTTCTGATCATATGTGTGCTAGTGGGCA,"Exon (Cadm4-201/Cadm4, exon 8 of 9)",7,24482023,24504539,22517,1,Cadm4-201,20695,Cadm4-201;Cadm4-202;Zfp428-202;Zfp428-201;Zfp428-204;Zfp428-203,Cadm4;Cadm4;Zfp428;Zfp428;Zfp428;Zfp428,0;0;-4239;-4303;-4332;-4363,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,260299,ENSMUSG00000054793,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
627,cg10605049,0.00000119,0.00000185,0.643319188,0.520492598,gain,ns,0.0000125,0.00000315,3.955442568,0.0000947,pos,ns,0.001751984,0.000922174,1.899842156,0.058381667,pos,ns,1.233723509,-0.0000248,0.0000317,-0.781611513,0.435039451,neg,ns,0.971605714,Rbfox1,Rbfox1_Intron,16,7293105,7293154,7293105,7293106,50,-,CGATAACGCTTAGGCCCCTCACCAAACTCTCAGTAACCATGGTAACTGTA,"Intron (Rbfox1-205/Rbfox1, intron 8 of 11)",16,5885355,7353045,1467691,1,Rbfox1-205,1407750,Rbfox1-205;Rbfox1-201;Rbfox1-202;Rbfox1-203;Rbfox1-208;Rbfox1-207,Rbfox1;Rbfox1;Rbfox1;Rbfox1;Rbfox1;Rbfox1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,35,268859,ENSMUSG00000008658,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15436,cg02957160,0.0000237,0.00000472,5.017916343,0.000000882,gain,yes,-0.0000317,0.00000802,-3.953260807,0.0000956,neg,ns,-0.007824028,0.002349782,-3.329681619,0.000974381,neg,ns,3.011271386,0.0000072,0.0000808,0.089080754,0.929075255,pos,ns,0.829122131,Tnrc6b,Tnrc6b_Exon,15,80889056,80889105,80889056,80889057,50,+,CGGGGATTTTAATGATATCATGAGGAAGGATCGATCTGGGTTCCGTCCAC,"Exon (Tnrc6b-201/Tnrc6b, exon 13 of 25)",15,80711313,80941085,229773,1,Tnrc6b-201,177743,Tnrc6b-201;Tnrc6b-207;Tnrc6b-208;Tnrc6b-209;Tnrc6b-205,Tnrc6b;Tnrc6b;Tnrc6b;Tnrc6b;Tnrc6b,0;0;0;4706;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,20,24,213988,ENSMUSG00000047888,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14819,cg10581746,0.000241621,0.0000169,14.29305982,6.00E-36,gain,yes,-0.000113504,0.0000287,-3.952241496,0.0000959,neg,ns,-0.000249781,0.008413698,-0.02968742,0.976335448,neg,ns,0.010400942,-0.000117727,0.000289346,-0.406873462,0.684381703,neg,ns,0.445814088,Fam172a,Fam172a_Intron,13,77878707,77878756,77878755,77878756,50,-,CACAAATTCTGCTCTAATTTGATATGGGAAAGCATGTAACCATGGAAACG,"Intron (Fam172a-203/Fam172a, intron 6 of 10)",13,77708690,78163655,454966,1,Fam172a-203,170017,Fam172a-203;Fam172a-201;Fam172a-202;Fam172a-209;Fam172a-205;Fam172a-207;Fam172a-208,Fam172a;Fam172a;Fam172a;Fam172a;Fam172a;Fam172a;Fam172a,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,24,68675,ENSMUSG00000064138,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
7133,cg05678488,-0.00000497,0.00000703,-0.706440294,0.48044498,loss,ns,0.0000472,0.0000119,3.950034657,0.0000968,pos,ns,0.002709805,0.003498566,0.774547227,0.439197597,pos,ns,0.357340045,0.0000304,0.000120315,0.252586239,0.800755363,pos,ns,0.156370971,Gm5973,Gm5973_Intergenic_upstream,1,41275242,41275291,41275290,41275291,50,+,CACTGAGACCTCCAGTTCAAAGAACTTTCCTTAAACCCTCTTCTTAAACG,Distal Intergenic,1,40863737,40864232,496,2,Gm5973-201,-411010,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,18,18,546733,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25134,cg02003853,0.0000774,0.0000154,5.026856792,0.000000845,gain,yes,-0.000103325,0.0000262,-3.949806322,0.0000969,neg,ns,0.076513655,0.007663826,9.983741477,1.55E-20,pos,yes,19.80846109,-0.003147292,0.000263558,-11.94153762,2.69E-27,neg,yes,0.584580291,Ahdc1,Ahdc1_Intron,4,133047422,133047471,133047470,133047471,50,-,GTTTATTCTTGGGCTTTAACAATTGGGATTCTGACTTGGAGGAGCGGGCG,"Intron (Ahdc1-210/Ahdc1, intron 2 of 3)",4,133011260,133060820,49561,1,Ahdc1-210,36162,Ahdc1-210;Ahdc1-203;Ahdc1-204;Ahdc1-205;Ahdc1-207;Ahdc1-211;Ahdc1-209;Ahdc1-206;Ahdc1-201;Ahdc1-202,Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,35,49,230793,ENSMUSG00000037692,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9725,cg26274031,0.0000781,0.00000862,9.059432701,1.51E-17,gain,yes,-0.0000578,0.0000146,-3.94943466,0.000097,neg,ns,-0.003715675,0.004288717,-0.866383835,0.386949761,neg,ns,0.412345417,0.000460138,0.000147489,3.119817161,0.001979791,pos,ns,0.82680903,Osbpl3,Osbpl3_Exon,6,50323054,50323103,50323054,50323055,50,-,CGTGTTCAGGGGCTCGTTCAGCTCCACCGGCATGGCCACCTTGGACAGGT,"Exon (Osbpl3-204/Osbpl3, exon 14 of 22)",6,50293330,50382837,89508,2,Osbpl3-204,59734,Osbpl3-204;Osbpl3-202;Osbpl3-201;Osbpl3-203;Osbpl3-205;Osbpl3-210,Osbpl3;Osbpl3;Osbpl3;Osbpl3;Osbpl3;Osbpl3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,71720,ENSMUSG00000029822,conserved gene and region,6,50323000,50323169,170,*,170,11,0.617647059,0.68,0.064705882,0.000000972,CpGisland,TRUE,U15,NS
5527,cg23197495,0.0000308,0.00000546,5.640321362,3.83E-08,gain,yes,-0.0000366,0.00000927,-3.947792157,0.0000977,neg,ns,-0.006492632,0.002716348,-2.390206263,0.01743577,neg,ns,1.758558858,0.000132761,0.0000934,1.421195287,0.156265139,pos,ns,0.805743287,Kalrn,Kalrn_Exon,16,34187430,34187479,34187430,34187431,50,-,CGCATGCTCCAGGATAAGCTGGTTGGAATCAGGCTTGTTTTTACAGTAGG,"Exon (Kalrn-201/Kalrn, exon 27 of 60)",16,33975495,34456917,481423,2,Kalrn-201,269438,Kalrn-201;Kalrn-217;Kalrn-208;Kalrn-207;Kalrn-206;Kalrn-202;Kalrn-205;Kalrn-204;Kalrn-218;Kalrn-203,Kalrn;Kalrn;Kalrn;Kalrn;Kalrn;Kalrn;Kalrn;Kalrn;Kalrn;Kalrn,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,18,22,545156,ENSMUSG00000061751,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12206,cg04340533,0.0000215,0.00000625,3.438755469,0.000664346,gain,ns,-0.0000419,0.0000106,-3.946822843,0.000098,neg,ns,-0.001144352,0.003110267,-0.367927056,0.713178714,neg,ns,0.146801628,0.000218127,0.000106962,2.039298462,0.042268017,pos,ns,0.705001604,2300009A05Rik,2300009A05Rik_Intron,9,63420568,63420617,63420568,63420569,50,-,CGGAGACAGTTTTCTTTTAAAGTCCAGAGCAGATGAGAGCCATAAGGAGA,"Intron (Gm16759-204/Gm16759-204, intron 1 of 3)",9,63397476,63399246,1771,2,2300009A05Rik-202,-21371,Iqch-201;Iqch-203;Iqch-204;Iqch-202;Iqch-206,Iqch;Iqch;Iqch;Iqch;Iqch,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,69478,ENSMUSG00000032403,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11299,cg06734127,0.0000321,0.0000249,1.287811012,0.198772264,gain,ns,0.000166839,0.0000423,3.944192061,0.0000991,pos,ns,0.022124312,0.012392418,1.785310334,0.075188556,pos,ns,1.123848258,-0.000747777,0.000426174,-1.75462782,0.080310926,neg,ns,0.48647517,Rbmx,Rbmx_fiveUTR,X,57392978,57393027,57392978,57392979,50,-,CGAGGGCGAACAAAGGAGACAGCAAACTTTATACTGCCCGGGAACGAGGC,Promoter (<=1kb),20,57383530,57392981,9452,2,Rbmx-205,0,Rbmx-205;Rbmx-201;Rbmx-203;Rbmx-202;Rbmx-206;Rbmx-204,Rbmx;Rbmx;Rbmx;Rbmx;Rbmx;Rbmx,0;0;0;0;0;-181,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,6,19655,ENSMUSG00000031134,mapped to different genes,X,57392853,57393069,217,*,217,20,0.557603687,1.186440678,0.092165899,7.82E-15,CpGisland,TRUE,U1,Pr-A
1038,cg04626222,-0.0000126,0.0000105,-1.196565342,0.232390329,loss,ns,0.0000705,0.0000179,3.941098422,0.000100284,pos,ns,0.000636937,0.005240612,0.121538725,0.903343088,pos,ns,0.044147274,0.000259604,0.000180224,1.440452348,0.150748649,pos,ns,0.902635856,Gm14485,Gm14485_Intergenic_upstream,X,11106151,11106200,11106151,11106152,50,-,CGATTATAAAGCTCTTTGAAATATGAAGTGCTGCATGATAATATCTGTAA,Distal Intergenic,20,11020515,11021007,493,2,Gm14485-201,-85193,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,9,547156,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13518,cg09658327,0.00000871,0.00002,0.435944105,0.663180701,gain,ns,-0.000133808,0.000034,-3.94039986,0.000100563,neg,ns,0.050861096,0.009948555,5.112410355,0.000000558,pos,ns,6.253556294,-0.001998368,0.00034213,-5.840961408,1.31E-08,neg,yes,0.664314123,Arid4a,Arid4a_Exon,12,71019380,71019429,71019428,71019429,50,+,GATGAGCCTGCCTACCTGACAGTGGGAACCGATGTCAGTGCCAAGTACCG,"Exon (Arid4a-201/Arid4a, exon 3 of 24)",12,71015990,71098592,82603,1,Arid4a-201,3390,Arid4a-201;Arid4a-203;Arid4a-202,Arid4a;Arid4a;Arid4a,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,9,238247,ENSMUSG00000048118,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26323,cg26532108,0.000032,0.0000119,2.689988948,0.007532539,gain,ns,0.0000797,0.0000202,3.938221509,0.000101436,pos,ns,0.012207099,0.005929707,2.058634425,0.040364607,pos,ns,1.393999274,-0.000118933,0.000203922,-0.583228902,0.560163264,neg,ns,0.655974961,Gm14111,Gm14111_Intergenic_downstream,2,146745529,146745578,146745577,146745578,50,-,ACAAATGCCTAGCTGTCACCGTGAGTTTTATCACTCAGTTTTTCCCTCCG,Distal Intergenic,2,146754707,146755705,999,2,Gm14111-201,10176,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,15,17,668918,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22721,cg06462819,0.0000973,0.0000075,12.97153405,4.94E-31,gain,yes,-0.0000502,0.0000127,-3.937886553,0.000101571,neg,ns,-0.000700873,0.003731796,-0.18781111,0.851147599,neg,ns,0.069995122,0.0000185,0.000128336,0.1439367,0.885643978,pos,ns,0.190456431,Meis2,Meis2_Intergenic_downstream,2,115856486,115856535,115856486,115856487,50,-,CGCTGATTGAAAAATAAAAGCGGACTTGGGGTGTGAGCCCAGCTCAACTT,Distal Intergenic,2,115864227,115868867,4641,2,Meis2-219,12381,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,97,17536,ENSMUSG00000027210,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
13638,cg07158748,-0.00000707,0.00000933,-0.757572214,0.449282582,loss,ns,-0.0000624,0.0000158,-3.936691042,0.000102053,neg,ns,0.014199012,0.004642304,3.058612833,0.002417622,pos,ns,2.616611687,-0.000941751,0.000159648,-5.898906253,9.57E-09,neg,yes,0.768351637,Fn1,Fn1_Exon,1,71603702,71603751,71603702,71603703,50,+,CGTGCAAGGCAACCACACTGACTGTGTACTCAGAACCCGGTCTGAGGCCT,"Exon (Fn1-214/Fn1, exon 32 of 45)",1,71585520,71653172,67653,2,Fn1-214,49421,Fn1-214;Fn1-211;Fn1-213;Fn1-216;Fn1-217;Fn1-201;Fn1-203;Fn1-202;Fn1-210;Fn1-209;Fn1-212;Fn1-215,Fn1;Fn1;Fn1;Fn1;Fn1;Fn1;Fn1;Fn1;Fn1;Fn1;Fn1;Fn1,0;0;0;0;0;0;0;0;-3334;-1326;-858;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,14268,ENSMUSG00000026193,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1786,cg26081767,0.00010274,0.00000757,13.57432797,2.92E-33,gain,yes,-0.0000506,0.0000129,-3.935240556,0.000102642,neg,ns,0.014317012,0.003767022,3.800618464,0.000173749,pos,ns,3.760076881,-0.000525715,0.000129548,-4.058087653,0.0000627,neg,ns,0.686913762,Foxp2,Foxp2_Exon,6,15196977,15197026,15196977,15196978,50,+,CGACAGAGACAATAAGCAACAGTTCAATGAATCAAAATGGAATGAGCACT,"Exon (Foxp2-207/Foxp2, exon 4 of 19)",6,14901349,15441977,540629,1,Foxp2-207,295628,Foxp2-207;Foxp2-213;Foxp2-208;Foxp2-211;Foxp2-217;Foxp2-203;Foxp2-216;Foxp2-205;Foxp2-204;Foxp2-201;Foxp2-210;Foxp2-214;Foxp2-212;Foxp2-209;Foxp2-202,Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,65,114142,ENSMUSG00000029563,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27351,cg08154911,0.0000166,0.00000674,2.464350229,0.014268432,gain,ns,0.000045,0.0000115,3.93363111,0.000103299,pos,ns,0.011057964,0.003354784,3.296177475,0.001093847,pos,ns,2.9610436,-0.000122239,0.000115371,-1.059535905,0.290180626,neg,ns,0.728148878,Cdh22,Cdh22_Intron,2,165192270,165192319,165192318,165192319,50,+,GAACTCACTGCAGCCCAGTGATCAGGACAAATTGAATACCATCCTGGCCG,"Intron (Cdh22-201/Cdh22, intron 1 of 11)",2,165111507,165234853,123347,2,Cdh22-201,42534,Cdh22-201,Cdh22,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,23,104010,ENSMUSG00000053166,conserved gene and region,2,165191991,165192372,382,*,382,21,0.602094241,0.6112,0.054973822,4.81E-11,CpGisland,TRUE,U11,Tr-P
26245,cg04382789,-0.00000643,0.00000449,-1.431531841,0.153285239,loss,ns,-0.00003,0.00000764,-3.933126203,0.000103506,neg,ns,-0.002940469,0.002236974,-1.314485034,0.189654726,neg,ns,0.72203633,-0.0000649,0.0000769,-0.842984986,0.399886783,neg,ns,0.884537247,Vps13d,Vps13d_Exon,4,145131621,145131670,145131669,145131670,50,-,TGCAATTTCAGCCTACAAGGCTCGGTTAAGAGGCTTCCTCCTGTCTGTCG,"Exon (Vps13d-202/Vps13d, exon 27 of 70)",4,144972622,145195005,222384,2,Vps13d-202,63335,Vps13d-202;Vps13d-201;Vps13d-210,Vps13d;Vps13d;Vps13d,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,10,230895,ENSMUSG00000020220,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20836,cg12433965,0.0000361,0.0000104,3.472889927,0.000588108,gain,ns,-0.0000695,0.0000177,-3.932873099,0.00010361,neg,ns,0.009902098,0.005180269,1.911502741,0.056861884,pos,ns,1.245178757,-0.000364948,0.000178149,-2.04855624,0.041347377,neg,ns,0.294141752,Pax6,Pax6_Intron,2,105612324,105612373,105612372,105612373,50,-,GCCACTGAATATTTCACTTTCAGCTGGGAGTGACAATGTGCTCAGGCCCG,"Intron (Pax6os1-202/Pax6os1-202, intron 1 of 3)",2,105668900,105697364,28465,1,Pax6-207,-56576,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,78,18508,ENSMUSG00000027168,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
271,cg23891594,0.0000433,0.0000111,3.916806111,0.00011041,gain,ns,0.0000738,0.0000188,3.929970882,0.000104808,pos,ns,0.017053721,0.005502847,3.099072366,0.002119251,pos,ns,2.673817527,-0.0000236,0.000189242,-0.12480889,0.900755743,neg,ns,0.210712398,Npas4,Npas4_threeUTR,19,4984591,4984640,4984591,4984592,50,-,CGCCAGGGCGGCAGAGTCCATCGGAATTGAAATCCCGTTACTGGTGTGTA,3' UTR,19,4984355,4989971,5617,2,Npas4-202,5331,Npas4-202;Npas4-201;Npas4-203,Npas4;Npas4;Npas4,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,14,16,225872,ENSMUSG00000045903,conserved gene and region,19,4984402,4984672,271,*,271,24,0.63099631,0.889740082,0.088560886,2.74E-17,CpGisland,TRUE,U13,Hc-P
19961,cg25448958,0.0000984,0.0000136,7.218873342,4.07E-12,gain,yes,-0.000091,0.0000232,-3.929732218,0.000104907,neg,ns,0.031846774,0.006785651,4.69325244,0.00000404,pos,ns,5.393484919,-0.001253118,0.000233358,-5.369937474,0.000000155,neg,yes,0.500470487,Clpb,Clpb_Intron,7,101772811,101772860,101772859,101772860,50,-,TTTCAGTTTCCCTAGCAACGCTGAGTGCTCATCCTGGAAAACTTTATCCG,"Intron (Clpb-201/Clpb, intron 7 of 15)",7,101663633,101790168,126536,1,Clpb-201,109178,Clpb-201;Clpb-202;Clpb-211;Clpb-208;Clpb-204;Clpb-209,Clpb;Clpb;Clpb;Clpb;Clpb;Clpb,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,21,21,20480,ENSMUSG00000001829,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4933,cg18838698,-0.00000983,0.00000933,-1.052814632,0.293245885,loss,ns,-0.0000623,0.0000159,-3.926772664,0.000106143,neg,ns,0.023841385,0.004644784,5.132937373,0.000000504,pos,ns,6.297151953,-0.000778594,0.000159734,-4.87432207,0.00000175,neg,yes,0.87046627,Marchf6,Marchf6_Exon,15,31471786,31471835,31471786,31471787,50,-,CGGCCAGCAAATACTGAAAATAGAAAAGCTGATAAATGAGACATGTGGCT,"Exon (Marchf6-201/Marchf6, exon 21 of 26)",15,31455891,31531053,75163,2,Marchf6-201,59218,Marchf6-201;Marchf6-203,Marchf6;Marchf6,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,7,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20090,cg11585868,-0.00000791,0.00000638,-1.240497076,0.21572963,loss,ns,0.0000425,0.0000108,3.926594834,0.000106218,pos,ns,0.007075509,0.003174627,2.228768706,0.026545982,pos,ns,1.576001208,-0.0000124,0.000109175,-0.113852652,0.909428299,neg,ns,0.944458632,Gpatch8,Gpatch8_Intron,11,102508957,102509006,102509005,102509006,50,+,GGGGCAGACAAGCACTTTACTACCACAGCTGTTTTACATCACAACCTGCG,"Intron (Gpatch8-206/Gpatch8, intron 3 of 7)",11,102475915,102556199,80285,2,Gpatch8-206,47193,Gpatch8-206;Gpatch8-201;Gpatch8-205;Gpatch8-203,Gpatch8;Gpatch8;Gpatch8;Gpatch8,0;-510;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,3,237943,ENSMUSG00000034621,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25138,cg07646293,0.000102247,0.0000146,7.010391157,1.49E-11,gain,yes,-0.0000973,0.0000248,-3.925452304,0.000106699,neg,ns,0.012924275,0.007259103,1.780422973,0.075986068,pos,ns,1.119266027,-0.001734403,0.00024964,-6.947617481,2.19E-11,neg,yes,0.542671388,Ahdc1,Ahdc1_fiveUTR,4,133060686,133060735,133060734,133060735,50,-,AAGAATTAAATGAAACGATGCCTGGACAGCTTCCAGCCCAGTACCTGGCG,5' UTR,4,133011260,133060820,49561,1,Ahdc1-210,49426,Ahdc1-210;Ahdc1-203;Ahdc1-204;Ahdc1-205;Ahdc1-211;Ahdc1-209;Ahdc1-206;Ahdc1-201;Ahdc1-202,Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,49,230793,ENSMUSG00000037692,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19033,cg14297543,0.00000818,0.0000331,0.247075632,0.805013239,gain,ns,0.000220688,0.0000562,3.925168093,0.00010682,pos,ns,0.044338733,0.01647166,2.69181939,0.007492281,pos,ns,2.125385953,-0.001176881,0.000566459,-2.077610113,0.038568158,neg,ns,0.684315551,Cdk12,Cdk12_Exon,11,98249786,98249835,98249786,98249787,50,+,CGCCCCCCAGGAGTTGAACCCAGCCGTGACAGCCGCCTTGCTGCAACTTT,"Exon (Cdk12-203/Cdk12, exon 14 of 14)",11,98203059,98251564,48506,1,Cdk12-203,46727,Cdk12-203;Cdk12-201;Cdk12-202;Cdk12-206,Cdk12;Cdk12;Cdk12;Cdk12,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,25,69131,ENSMUSG00000003119,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10296,cg22362271,0.0000325,0.00000266,12.2274288,2.53E-28,gain,yes,-0.0000177,0.00000452,-3.922065929,0.000108138,neg,ns,-0.000404968,0.001324577,-0.305734048,0.760012351,neg,ns,0.11917935,0.0000936,0.0000456,2.05529181,0.040688331,pos,ns,0.956085227,Hibadh,Hibadh_Intron,6,52567549,52567598,52567549,52567550,50,+,CGAACAATATAATCCCGTGAAAGTAATCAACAAATTTAAGGGTGTTAATT,"Intron (Hibadh-201/Hibadh, intron 4 of 7)",6,52546228,52640389,94162,2,Hibadh-201,72791,Hibadh-201;Hibadh-203,Hibadh;Hibadh,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,13,58875,ENSMUSG00000029776,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21145,cg03755582,0.0000347,0.0000137,2.528311193,0.011957478,gain,ns,0.0000914,0.0000233,3.921934226,0.000108195,pos,ns,0.046758623,0.006827657,6.848413796,4.02E-11,pos,yes,10.39596571,-0.000978347,0.000234803,-4.166680218,0.0000401,neg,ns,0.288275738,Gm17304,Gm17304_Intron,5,106560825,106560874,106560873,106560874,50,+,AACCGCAAACTGGTCATTATCCAGCCATTATTTTAGTTGATTTACAATCG,"Intron (Gm28050-202/Gm28050-202, intron 1 of 2)",5,106609098,106609201,104,1,Gm17304-201,-48224,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,35,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
14254,cg25974818,0.0000665,0.00000885,7.514687144,6.16E-13,gain,yes,-0.0000589,0.000015,-3.920316301,0.000108889,neg,ns,-0.006022722,0.004403505,-1.367711031,0.172393234,neg,ns,0.763479783,-0.000772217,0.000151436,-5.099290925,0.000000595,neg,yes,0.45196436,Smg6,Smg6_Exon,11,74981858,74981907,74981906,74981907,50,+,AAAAGGTTCATCCTCAGTTTTCTCCATGCCCATGGGAAGCTGTTTACCCG,"Exon (Smg6-201/Smg6, exon 9 of 19)",11,74925823,75164448,238626,1,Smg6-201,56035,Smg6-201;Smg6-202,Smg6;Smg6,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,34,103677,ENSMUSG00000038290,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8106,cg15564505,0.000000963,0.0000166,0.058166127,0.953653777,gain,ns,0.000110261,0.0000281,3.919019003,0.000109449,pos,ns,0.007766624,0.008242576,0.942256819,0.346794881,pos,ns,0.459927322,0.000481146,0.000283462,1.69739388,0.090625838,pos,ns,0.611774048,Pax2,Pax2_Promoter,19,44748179,44748228,44748227,44748228,50,-,TGTTGAAGATGGAATTCAATTGAGAGCCCATCTGTGCACCCCCTCGACCG,Promoter (7-8kb),19,44756045,44837851,81807,1,Pax2-203,-7866,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,5,166,18504,ENSMUSG00000004231,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
18293,cg01901338,0.0000295,0.0000131,2.253365591,0.024934717,gain,ns,0.0000871,0.0000222,3.918606813,0.000109627,pos,ns,0.027962761,0.006508873,4.296098448,0.0000233,pos,ns,4.632787173,-0.000662445,0.00022384,-2.959462785,0.003319284,neg,ns,0.380456867,Gm48316,Gm48316_Intron,13,94702252,94702301,94702300,94702301,50,+,AATATCAAATTTAGGCCAATTAGGGTCCTCCACAGTCCCAAATTCACCCG,"Intron (Gm32351-201/Gm32351-201, intron 1 of 2)",13,94752270,94752593,324,1,Gm48316-201,-49969,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,42,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
786,cg24539381,0.00000911,0.00000448,2.034259186,0.042776433,gain,ns,-0.0000298,0.0000076,-3.918596962,0.000109631,neg,ns,0.012137412,0.002227931,5.447839316,0.000000104,pos,ns,6.982849927,-0.000407182,0.0000766,-5.314418075,0.000000205,neg,yes,0.86715981,Pum2,Pum2_Exon,12,8733417,8733466,8733465,8733466,50,-,TAGGCATGCCTCTGCCAAGCCAAACTCCAGGACATTCACTTACGCCACCG,"Exon (Pum2-203/Pum2, exon 13 of 21)",12,8674134,8751454,77321,1,Pum2-203,59283,Pum2-203;Pum2-216;Pum2-201;Pum2-202;Pum2-207;Pum2-204;Pum2-210;Pum2-209;Pum2-206,Pum2;Pum2;Pum2;Pum2;Pum2;Pum2;Pum2;Pum2;Pum2,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,11,80913,ENSMUSG00000020594,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3240,cg04565108,0.000093,0.0000179,5.189497575,0.000000382,gain,yes,-0.000119239,0.0000304,-3.917576874,0.000110074,neg,ns,0.031866391,0.008916956,3.573684965,0.000408029,pos,ns,3.389308543,-0.001041484,0.000306653,-3.396290247,0.000772083,neg,ns,0.534495384,Usp34,Usp34_Exon,11,23333537,23333586,23333585,23333586,50,-,TCCGGGACCAGCTTTGTAAACATTGTACTACCATTAACATAGATTCCACG,"Exon (Usp34-208/Usp34, exon 3 of 80)",11,23306895,23490560,183666,1,Usp34-208,26642,Usp34-208;Usp34-205,Usp34;Usp34,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,13,14,17847,ENSMUSG00000056342,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6742,cg27184847,-0.0000467,0.0000127,-3.673444926,0.000281816,loss,ns,0.0000846,0.0000216,3.916587041,0.000110505,pos,ns,0.003136678,0.006330835,0.4954605,0.620626127,pos,ns,0.207169946,0.0000577,0.000217717,0.264831221,0.791315484,pos,ns,0.216855603,Lgi1,Lgi1_Exon,19,38265014,38265063,38265014,38265015,50,+,CGTGTGTACTTGTACCAAAGATAATGCTTTATGTGAGAATGCCAGATCCA,Promoter (<=1kb),19,38264536,38312214,47679,1,Lgi1-207,478,Lgi1-207;Lgi1-201;Lgi1-209;Lgi1-206;Lgi1-205;Lgi1-204;Lgi1-208;Lgi1-203;Lgi1-202,Lgi1;Lgi1;Lgi1;Lgi1;Lgi1;Lgi1;Lgi1;Lgi1;Lgi1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,7,56839,ENSMUSG00000067242,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12250,cg20771405,-0.00000835,0.00000234,-3.567597504,0.000417238,loss,ns,0.0000156,0.00000397,3.915216241,0.000111105,pos,ns,0.003805001,0.001164328,3.267978957,0.001204799,pos,ns,2.919085484,-0.000123305,0.00004,-3.079454411,0.00225941,neg,ns,0.066571273,Ptch1,Ptch1_Intron,13,63566290,63566339,63566290,63566291,50,-,CGAAAGAGAAAAAGGCTGGAGCTCCCGCCCCCGGGGCTGTCAGATGGCTT,"Intron (Ptch1-204/Ptch1, intron 1 of 23)",13,63508329,63573460,65132,2,Ptch1-204,7121,Ptch1-201;Ptch1-204;Ptch1-206;Ptch1-202;Ptch1-207;Ptch1-203;Ptch1-205,Ptch1;Ptch1;Ptch1;Ptch1;Ptch1;Ptch1;Ptch1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,36,19206,ENSMUSG00000021466,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
27908,cg25379954,0.000078,0.0000127,6.162803853,2.22E-09,gain,yes,-0.0000841,0.0000215,-3.913545892,0.00011184,neg,ns,0.01793728,0.006297463,2.848334371,0.00468864,pos,ns,2.328953075,-0.000436768,0.000216569,-2.01675763,0.044582715,neg,ns,0.764347658,Prox1,Prox1_Exon,1,190161835,190161884,190161883,190161884,50,-,GGGGGCTGTCTCTTGAAGAGTTGCTGCATATATCCTCCTGATGTACTTCG,"Exon (Prox1-202/Prox1, exon 2 of 5)",1,190118035,190170714,52680,2,Prox1-202,8830,Prox1-202;Prox1-201;Prox1-203,Prox1;Prox1;Prox1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,19,59,19130,ENSMUSG00000010175,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18117,cg01890425,0.0000702,0.0000129,5.456712824,9.94E-08,gain,yes,-0.0000855,0.0000219,-3.912720063,0.000112205,neg,ns,0.006895135,0.006402629,1.076922527,0.282352222,pos,ns,0.549208791,-0.000516387,0.000220186,-2.345233952,0.01964548,neg,ns,0.897649535,Gnao1,Gnao1_threeUTR,8,93966956,93967005,93967004,93967005,50,-,CATGACTTGTGCCACAGACACGAATAACATCCAGGTGGTGTTCGACGCCG,3' UTR,8,93810838,93969388,158551,1,Gnao1-201,156118,Amfr-201;Gnao1-201;Gnao1-203;Gnao1-204;Gnao1-208;Gnao1-210;Gnao1-211;Gnao1-212,Amfr;Gnao1;Gnao1;Gnao1;Gnao1;Gnao1;Gnao1;Gnao1,45837;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,5,13,14681,ENSMUSG00000031748,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17046,cg20294961,0.0000135,0.0000173,0.780225809,0.435853292,gain,ns,0.000115268,0.0000295,3.911949004,0.000112547,pos,ns,0.016891561,0.008632459,1.956749767,0.051274306,pos,ns,1.29010021,0.000238939,0.00029687,0.804861827,0.421516269,pos,ns,0.584802095,Il1rapl1,Il1rapl1_Promoter,X,88114859,88114908,88114907,88114908,50,+,CAGTTATTCCATTCAGTGCCAATAACGGCCACATCACAGCCATCAATGCG,Promoter (<=1kb),20,86740870,88115645,1374776,2,Il1rapl1-203,737,Il1rapl1-203;Il1rapl1-202,Il1rapl1;Il1rapl1,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,6,18,331461,ENSMUSG00000052372,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13642,cg21652399,0.0000201,0.00000629,3.20406044,0.001496071,gain,ns,-0.0000418,0.0000107,-3.911431784,0.000112777,neg,ns,0.010328399,0.003129247,3.300601822,0.001077326,pos,ns,2.967653029,-0.000420382,0.000107615,-3.906369454,0.000115051,neg,ns,0.879039541,Fn1,Fn1_Exon,1,71613934,71613983,71613982,71613983,50,-,TGCGGTACCCAATAATGGTGGAAGAGTTTAGCGGGGTCCACCTCAGGCCG,"Exon (Fn1-201/Fn1, exon 25 of 46)",1,71585520,71653172,67653,2,Fn1-214,39189,Fn1-214;Fn1-211;Fn1-213;Fn1-216;Fn1-217;Fn1-201;Fn1-203;Fn1-202;Fn1-215,Fn1;Fn1;Fn1;Fn1;Fn1;Fn1;Fn1;Fn1;Fn1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,14268,ENSMUSG00000026193,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11027,cg10842253,-0.00000569,0.00000873,-0.651842647,0.514985664,loss,ns,0.000058,0.0000148,3.910060967,0.000113388,pos,ns,0.013546346,0.004345427,3.117379843,0.001995726,pos,ns,2.69989906,-0.000255772,0.000149439,-1.711546619,0.087980452,neg,ns,0.105349076,Mbip,Mbip_Intergenic_downstream,12,56302204,56302253,56302252,56302253,50,-,ATGCAATAAAACAGCAAGAAGTGAATGTTAACCATCTGAGTTCTGACACG,Distal Intergenic,12,56340511,56345821,5311,2,Mbip-202,43617,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,12,13,217588,ENSMUSG00000021028,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2626,cg14699463,0.000015,0.0000112,1.341030093,0.180892414,gain,ns,-0.0000743,0.000019,-3.908357995,0.000114153,neg,ns,0.038438877,0.005568833,6.902501697,2.89E-11,pos,yes,10.5389351,-0.001220035,0.000191512,-6.370551487,6.80E-10,neg,yes,0.657787739,Chrd,Chrd_threeUTR,16,20736037,20736086,20736085,20736086,50,+,TCCTGCAAAGTGTCCTTTGTGGGGCTGATGCCCTGATCCCAGTCCAGACG,3' UTR,16,20733127,20738152,5026,1,Chrd-202,2910,Chrd-202;Chrd-201;Chrd-204;Chrd-205;Chrd-207;Chrd-209;Chrd-210;Chrd-208;Chrd-206;Chrd-203;Thpo-202,Chrd;Chrd;Chrd;Chrd;Chrd;Chrd;Chrd;Chrd;Chrd;Chrd;Thpo,0;0;0;0;0;0;0;2603;2534;-120;-1526,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,12667,ENSMUSG00000006958,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17810,cg11375753,-0.00000711,0.00000375,-1.898552527,0.058551814,loss,ns,-0.0000249,0.00000637,-3.906275429,0.000115094,neg,ns,-0.002724527,0.001865104,-1.460791093,0.145085559,neg,ns,0.838375813,0.0000348,0.0000641,0.542971663,0.587539488,pos,ns,0.857697337,Ambra1,Ambra1_Exon,2,91825301,91825350,91825301,91825302,50,+,CGTGGACAGCCTGGCTTGGCTACTCACTCTTCTGTTAACAGGGTCCTGGC,"Exon (Ambra1-203/Ambra1, exon 12 of 19)",2,91730134,91918849,188716,1,Ambra1-203,95167,Ambra1-203;Ambra1-205;Ambra1-204;Ambra1-202;Ambra1-201;Ambra1-207;Ambra1-208,Ambra1;Ambra1;Ambra1;Ambra1;Ambra1;Ambra1;Ambra1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,12,228361,ENSMUSG00000040506,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5713,cg10534067,-0.00000541,0.0000144,-0.374502087,0.708286852,loss,ns,0.0000958,0.0000245,3.906057709,0.000115192,pos,ns,0.009129192,0.0071859,1.270431399,0.20488364,pos,ns,0.688492719,-0.000221113,0.000247122,-0.894752465,0.371613598,neg,ns,0.586005539,Kctd15,Kctd15_Intergenic_downstream,7,34606307,34606356,34606307,34606308,50,+,CGAAACACTGCAGACACACGGCCTCAGGCAGCCTAAAACCTTTGGAGACC,Distal Intergenic,7,34640182,34648744,8563,2,Kctd15-206,42388,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,25,233107,ENSMUSG00000030499,conserved gene and region,7,34606195,34606326,132,*,132,9,0.606060606,0.754285714,0.068181818,0.00000904,CpGisland,TRUE,U15,NS
6257,cg26669819,-0.00000373,0.00000443,-0.841016672,0.400986837,loss,ns,0.0000294,0.00000753,3.905232378,0.000115568,pos,ns,0.002162617,0.002205175,0.980701155,0.32750487,pos,ns,0.484782238,0.0000266,0.0000758,0.350933762,0.725876409,pos,ns,0.917616148,Trpc3,Trpc3_Exon,3,36634382,36634431,36634382,36634383,50,+,CGTGTTGGCTGATTGAGAATGCTGTTAAAACTGTGTGATTCAAAAACTCT,"Exon (Trpc3-201/Trpc3, exon 10 of 12)",3,36620482,36690167,69686,2,Trpc3-201,55736,Trpc3-201;Trpc3-204,Trpc3;Trpc3,0;6189,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,22065,ENSMUSG00000027716,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13745,cg01194316,0.0000214,0.0000041,5.217587264,0.000000332,gain,yes,-0.0000272,0.00000697,-3.903940684,0.000116157,neg,ns,-0.004912943,0.002041687,-2.406315055,0.016699272,neg,ns,1.777302459,0.000193277,0.0000702,2.752705407,0.006258865,pos,ns,0.785740496,Eps15l1,Eps15l1_Exon,8,72358350,72358399,72358350,72358351,50,-,CGGAGGCAGAGCAGGAGTGTCCTGTTTACTTTTAAAGGGGTCATCTGAGA,"Exon (Eps15l1-201/Eps15l1, exon 22 of 24)",8,72340999,72421460,80462,2,Eps15l1-201,63061,Eps15l1-201;Eps15l1-203;Eps15l1-204;Eps15l1-206,Eps15l1;Eps15l1;Eps15l1;Eps15l1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,13859,ENSMUSG00000006276,conserved gene but different region,8,72358262,72358351,90,*,90,12,0.733333333,1.015037594,0.133333333,4.94E-11,CpGisland,TRUE,U10,Tr-S
10357,cg00349017,0.0000592,0.00000519,11.42312632,1.85E-25,gain,yes,-0.0000344,0.00000881,-3.902208133,0.000116953,neg,ns,-0.002359581,0.002581026,-0.914202491,0.361320957,neg,ns,0.442106848,0.0000547,0.0000888,0.616369991,0.5381027,pos,ns,0.884237366,Snx2,Snx2_Exon,18,53210295,53210344,53210295,53210296,50,+,CGGTTTGTTTGCCCTTATTTGTCATTCAATTCCAGCTGCCTAGAGCAGTT,"Exon (Snx2-201/Snx2, exon 9 of 15)",18,53176316,53220865,44550,1,Snx2-201,33979,Snx2-201;Snx2-203,Snx2;Snx2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,67804,ENSMUSG00000034484,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9235,cg09665273,0.00000146,0.00000956,0.152476992,0.878909928,gain,ns,0.0000634,0.0000162,3.901993148,0.000117052,pos,ns,0.002663222,0.004759238,0.559589965,0.576163236,pos,ns,0.239454457,0.0000742,0.00016367,0.453081933,0.650806701,pos,ns,0.895678972,Smarca1,Smarca1_threeUTR,X,47809691,47809740,47809739,47809740,50,-,GAAACAACAATAATACAACTATAGAATCTAGGTTCTCTTTCAAAGCAGCG,3' UTR,20,47809368,47892519,83152,2,Smarca1-201,82779,Smarca1-201;Smarca1-203;Smarca1-202,Smarca1;Smarca1;Smarca1,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,2,93761,ENSMUSG00000031099,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26853,cg08074847,0.000221743,0.0000205,10.80529617,2.61E-23,gain,yes,-0.000135983,0.0000349,-3.900418632,0.000117779,neg,ns,0.062419147,0.010213853,6.11122458,2.96E-09,pos,ns,8.528013473,-0.001850372,0.000351254,-5.267909748,0.000000259,neg,yes,0.364656442,Dhx9,Dhx9_threeUTR,1,153476503,153476552,153476503,153476504,50,-,CGATGCCAGTATGTTTCTCAGCCAGGCTTAAAGTCAGCACTCAATCTCAT,3' UTR,1,153455758,153487608,31851,2,Dhx9-202,11056,Dhx9-202;Dhx9-201;Dhx9-203;Dhx9-209;Dhx9-204;Dhx9-207;Dhx9-206;Dhx9-208,Dhx9;Dhx9;Dhx9;Dhx9;Dhx9;Dhx9;Dhx9;Dhx9,0;0;0;0;0;0;11106;3998,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,1,13211,ENSMUSG00000042699,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19561,cg08414807,-0.0000174,0.00000958,-1.814392093,0.070583908,loss,ns,0.0000635,0.0000163,3.900323415,0.000117824,pos,ns,-0.000859443,0.00476917,-0.180208001,0.857107022,neg,ns,0.066964947,0.0000969,0.000164011,0.591066078,0.554906855,pos,ns,0.845123523,Tmem28,Tmem28_Exon,X,99845443,99845492,99845491,99845492,50,-,TGCCAGCGCTGGGTGCCCTGCAAGCAATACTGCCTGGAGGTGCAGACCCG,"Exon (Tmem28-201/Tmem28, exon 2 of 3)",20,99821021,99848790,27770,1,Tmem28-201,24422,Tmem28-201,Tmem28,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,7,620592,ENSMUSG00000071719,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15475,cg25796577,-0.00000893,0.0000155,-0.577216038,0.564212474,loss,ns,0.000102451,0.0000263,3.899883291,0.000118028,pos,ns,0.018229939,0.00769629,2.368665804,0.018465253,pos,ns,1.733644744,-0.000146965,0.000264675,-0.555266328,0.579112962,neg,ns,0.472562063,Sall3,Sall3_Promoter,18,80991671,80991720,80991719,80991720,50,-,TGCTACAGACTTATGATGAATAGCCAGAGTGGTTAAAGTCCTTTATCACG,Promoter (4-5kb),18,80966376,80986771,20396,2,Sall3-201,-4949,Sall3-201,Sall3,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,10,20689,ENSMUSG00000024565,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
19038,cg04537039,0.0000272,0.00000568,4.786559712,0.00000263,gain,ns,-0.0000376,0.00000966,-3.89840378,0.000118717,neg,ns,-0.004554634,0.002829288,-1.609816422,0.108455725,neg,ns,0.96474752,0.0000299,0.0000973,0.307716863,0.758504425,pos,ns,0.786366737,Cdk12,Cdk12_Intron,11,98266053,98266102,98266053,98266054,50,-,CGAGCAGAGCAGCAGTGCAGATTAAAATCTCCAATTAGCGTTAAAGTGAA,"Intron (Cdk12-206/Cdk12, intron 6 of 7)",11,98241737,98278504,36768,1,Cdk12-206,24316,Cdk12-206;Cdk12-204,Cdk12;Cdk12,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,25,69131,ENSMUSG00000003119,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20371,cg16184782,0.000140154,0.0000103,13.63374293,1.76E-33,gain,yes,-0.0000681,0.0000175,-3.89788333,0.00011896,neg,ns,-0.004578337,0.005116433,-0.894829846,0.37157229,neg,ns,0.429956681,0.000228912,0.000175954,1.30098052,0.19423129,pos,ns,0.313982807,Hoxc5,Hoxc5_Exon,15,103014239,103014288,103014239,103014240,50,+,CGCCTTCCAACTCTCTCCACGGGGTAGACATGGCTGCCAACCCCCGGGCT,"Exon (Hoxc5-201/Hoxc5, exon 1 of 2)",15,102967443,103015676,48234,1,Hoxc5-202,46796,Hoxc4-202;Hoxc5-202;Hoxc5-201;Hoxc6-202;Hoxc6-203;Hoxc6-201,Hoxc4;Hoxc5;Hoxc5;Hoxc6;Hoxc6;Hoxc6,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,72,134,15424,ENSMUSG00000022485,mapped to different genes,15,103014167,103014734,568,*,568,41,0.588028169,0.835773758,0.072183099,1.73E-25,CpGisland,TRUE,U13,Hc-P
7587,cg13275896,0.00000429,0.0000228,0.187965449,0.851026713,gain,ns,-0.000151037,0.0000388,-3.897660402,0.000119065,neg,ns,0.035001385,0.011352662,3.083099419,0.00223274,pos,ns,2.651161859,-0.001860818,0.000390417,-4.766230496,0.00000289,neg,ns,0.682263433,Cpeb2,Cpeb2_Intergenic_downstream,5,43339231,43339280,43339231,43339232,50,-,CGACAATGCAGTGCTTTCTGCACCATCTGCTGGCTCTGCAAAGGTAATTA,Distal Intergenic,5,43237315,43246459,9145,1,Cpeb2-203,101965,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,11,231207,ENSMUSG00000039782,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7538,cg18331603,-0.00000432,0.00000677,-0.637335531,0.524376724,loss,ns,0.0000448,0.0000115,3.897588938,0.000119098,pos,ns,0.003191414,0.003369727,0.94708388,0.344333697,pos,ns,0.463020475,-0.00000776,0.000115885,-0.066980441,0.946640452,neg,ns,0.883436142,Tenm1,Tenm1_Intron,X,43052790,43052839,43052790,43052791,50,+,CGATGTTTAGATTAAACCTCGCTAAGGACTAAAAGGATAATTTGTCAGTA,"Intron (Tenm1-202/Tenm1, intron 3 of 30)",20,42527866,43167817,639952,2,Tenm1-202,114978,Tenm1-202;Tenm1-203;Tenm1-201;Tenm1-206;Tenm1-205,Tenm1;Tenm1;Tenm1;Tenm1;Tenm1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,2,23963,ENSMUSG00000016150,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19034,cg23849723,0.0000573,0.0000465,1.23299596,0.218511446,gain,ns,0.000307955,0.000079,3.897568939,0.000119108,pos,ns,0.054962636,0.023147839,2.374417566,0.018185255,pos,ns,1.740280595,-0.001618599,0.000796052,-2.033281665,0.042875655,neg,ns,0.814901191,Cdk12,Cdk12_Exon,11,98249940,98249989,98249988,98249989,50,-,AACACTGATGGGCCTGAAACAGGGTTCAGTGCCATTGACACTGATGAACG,"Exon (Cdk12-203/Cdk12, exon 14 of 14)",11,98203059,98251564,48506,1,Cdk12-203,46881,Cdk12-203;Cdk12-201;Cdk12-202;Cdk12-206,Cdk12;Cdk12;Cdk12;Cdk12,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,25,69131,ENSMUSG00000003119,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15943,cg25860081,0.0000941,0.0000151,6.218883141,1.62E-09,gain,yes,-0.000100194,0.0000257,-3.897017584,0.000119366,neg,ns,0.059932081,0.007532317,7.956659042,3.35E-14,pos,yes,13.47480158,-0.001294647,0.000259036,-4.997946977,0.000000971,neg,yes,0.750729524,Zfp638,Zfp638_Exon,6,83929254,83929303,83929254,83929255,50,+,CGCTATACAAAAGAGAGTGCCTCAAGTATCTTAGCAAGTTTTGGATTATC,"Exon (Zfp638-220/Zfp638, exon 2 of 27)",6,83867110,83943021,75912,1,Zfp638-205,62144,Zfp638-217;Zfp638-205;Zfp638-220;Zfp638-218;Zfp638-213;Zfp638-215;Zfp638-207;Zfp638-203;Zfp638-202;Zfp638-201;Zfp638-211;Zfp638-206;Zfp638-212,Zfp638;Zfp638;Zfp638;Zfp638;Zfp638;Zfp638;Zfp638;Zfp638;Zfp638;Zfp638;Zfp638;Zfp638;Zfp638,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,3,18139,ENSMUSG00000030016,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5109,cg15785552,0.0000381,0.00000594,6.405697057,5.55E-10,gain,yes,-0.0000393,0.0000101,-3.895281819,0.000120184,neg,ns,0.008644499,0.002956835,2.923564438,0.003715319,pos,ns,2.430003947,-0.000127836,0.000101685,-1.257170826,0.209638113,neg,ns,0.774613629,Akap8l,Akap8l_Exon,17,32333925,32333974,32333973,32333974,50,-,TCTGGGCCACGGGGTCAGCTTTGTCTGGAGAGCCCAGGGGCCGGGCGCCG,"Exon (Akap8l-206/Akap8l, exon 9 of 13)",17,32321424,32350575,29152,2,Akap8l-206,16601,Akap8l-206;Akap8l-207;Akap8l-201;Akap8l-209;Akap8l-205;Akap8l-212;Akap8l-204;Akap8l-210;Akap8l-208;Akap8l-211;Akap8l-213;Akap8l-202;Akap8l-203,Akap8l;Akap8l;Akap8l;Akap8l;Akap8l;Akap8l;Akap8l;Akap8l;Akap8l;Akap8l;Akap8l;Akap8l;Akap8l,0;0;0;0;-1026;-444;0;0;-451;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,7,54194,ENSMUSG00000002625,conserved gene but different region,17,32333847,32333977,131,*,131,14,0.748091603,0.771885522,0.106870229,2.07E-11,CpGisland,TRUE,U10,Tr-S
18211,cg04056615,0.0000116,0.00000808,1.431272826,0.153359376,gain,ns,0.0000535,0.0000137,3.89451734,0.000120546,pos,ns,0.017758951,0.004022157,4.415280706,0.0000139,pos,ns,4.855427014,-0.000316908,0.000138322,-2.291097796,0.022628422,neg,ns,0.455587933,Celf3,Celf3_Exon,3,94484297,94484346,94484297,94484298,50,-,CGTTGCCACGGAGACTGGGCATCTGCTCCCTTTGTGCTGCCCGAGTGCCT,Promoter (<=1kb),3,94484327,94492193,7867,1,Celf3-211,0,Celf3-214;Celf3-208;Celf3-204;Celf3-215;Celf3-201;Celf3-213;Celf3-212;Celf3-207;Celf3-206;Celf3-211;Celf3-205;Celf3-209;Celf3-210;Celf3-202;Celf3-203;Riiad1-202,Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Riiad1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,12,78784,ENSMUSG00000028137,conserved gene but different region,3,94484222,94484339,118,*,118,11,0.652542373,0.879403794,0.093220339,2.29E-08,CpGisland,TRUE,U11,Tr-P
12121,cg13241746,0.000075,0.0000103,7.274579498,2.86E-12,gain,yes,-0.0000682,0.0000175,-3.893750197,0.00012091,neg,ns,0.013557624,0.005132639,2.641452871,0.008673686,pos,ns,2.061796313,-0.000288576,0.000176511,-1.634887397,0.103087642,neg,ns,0.523939098,Hnrnph3,Hnrnph3_Exon,10,63018839,63018888,63018887,63018888,50,-,CTGTGCTTCTCCCCTGGTAGTCCATCGTCAATGTTATCCCATTTGGCACG,"Exon (Hnrnph3-201/Hnrnph3, exon 3 of 10)",10,63014664,63023894,9231,2,Hnrnph3-201,5006,Hnrnph3-201;Hnrnph3-202;Hnrnph3-204;Hnrnph3-205;Hnrnph3-206;Hnrnph3-203;Rufy2-202;Rufy2-205,Hnrnph3;Hnrnph3;Hnrnph3;Hnrnph3;Hnrnph3;Hnrnph3;Rufy2;Rufy2,0;0;0;-2671;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,7,432467,ENSMUSG00000020069,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16619,cg20847714,0.0000625,0.00000647,9.663548664,1.75E-19,gain,yes,-0.0000428,0.000011,-3.893129126,0.000121205,neg,ns,-0.006931444,0.003220029,-2.152602853,0.032121396,neg,ns,1.493205589,0.000213487,0.000110737,1.927880679,0.054783239,pos,ns,0.807754295,Btbd11,Btbd11_Exon,10,85632099,85632148,85632099,85632100,50,+,CGCAAACTGCTCGCCCAGCCAGAGAAGGAGAAGAGTGATATCCTGTCCCT,"Exon (Btbd11-203/Btbd11, exon 10 of 17)",10,85386814,85660292,273479,1,Btbd11-203,245285,Btbd11-203;Btbd11-201;Btbd11-202;Btbd11-206,Btbd11;Btbd11;Btbd11;Btbd11,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,13,13,74007,ENSMUSG00000020042,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18010,cg16692177,0.0000339,0.0000129,2.630794044,0.00894419,gain,ns,0.0000852,0.0000219,3.890827946,0.000122306,pos,ns,0.019483069,0.006417278,3.036033409,0.002600478,pos,ns,2.584946809,-0.000564672,0.00022069,-2.558669625,0.010982197,neg,ns,0.510873272,Arx,Arx_Intergenic_downstream,X,93302181,93302230,93302229,93302230,50,+,ACAAAACGAAACCTACTTATTAGCTTAGTGGTTAAATTAATGCAGAGCCG,Downstream (2-3kb),20,93286510,93298062,11553,1,Arx-202,15671,Arx-201;Arx-202;Pola1-201,Arx;Arx;Pola1,0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,8,32,11878,ENSMUSG00000035277,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8581,cg10596657,0.000013,0.00000389,3.341726292,0.000934485,gain,ns,-0.0000257,0.0000066,-3.890202583,0.000122607,neg,ns,-0.003607292,0.001934578,-1.86463975,0.063176769,neg,ns,1.199442588,0.00000681,0.0000665,0.102290349,0.91859235,pos,ns,0.913890733,Snrnp70,Snrnp70_threeUTR,7,45383129,45383178,45383177,45383178,50,-,CACTGAGGTGTTGTAAGGGGAGCGTAAGCATCAGCTGCAAGCCAGCTGCG,3' UTR,7,45376453,45395742,19290,2,Snrnp70-201,12564,Snrnp70-201;Snrnp70-207;Snrnp70-216;Snrnp70-215;Snrnp70-214;Snrnp70-204;Snrnp70-209;Snrnp70-213;Snrnp70-206;Snrnp70-205;Snrnp70-217;Snrnp70-203;Snrnp70-202;Snrnp70-212;Snrnp70-211,Snrnp70;Snrnp70;Snrnp70;Snrnp70;Snrnp70;Snrnp70;Snrnp70;Snrnp70;Snrnp70;Snrnp70;Snrnp70;Snrnp70;Snrnp70;Snrnp70;Snrnp70,0;0;0;0;0;0;-1812;0;11621;4592;11994;12016;11541;12531;9600,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,8,20637,ENSMUSG00000063511,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9368,cg03533765,-0.0000104,0.0000109,-0.947056997,0.344347373,loss,ns,0.0000723,0.0000186,3.88965399,0.000122872,pos,ns,0.030098544,0.005442587,5.530190711,0.000000068,pos,ns,7.167338745,-0.001200076,0.00018717,-6.411684482,5.36E-10,neg,yes,0.768167982,Gm13472,Gm13472_Intron,2,48425976,48426025,48425976,48425977,50,+,CGCTGCAGGATGATAGTGACTTCTGAAATTATCACAATTATCATTCCATT,"Intron (Gm13481-201/Gm13481-201, intron 1 of 5)",2,48388037,48388350,314,1,Gm13472-201,37939,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,4,108168751,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19165,cg04226139,-0.000062,0.0000113,-5.471842395,0.000000092,loss,yes,0.0000748,0.0000192,3.889311636,0.000123037,pos,ns,0.001320581,0.005635783,0.23432069,0.814890706,pos,ns,0.088900636,-0.0000856,0.000193814,-0.441561858,0.659114129,neg,ns,0.630958068,Gm27034,Gm27034_Intergenic_downstream,14,98730258,98730307,98730306,98730307,50,+,AAATAGGTTCAGAATGTTCCCACAAACTCATTATAAATCAAGCTGCTTCG,Distal Intergenic,14,98714813,98715752,940,1,Gm27034-201,15445,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,5,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12800,cg16414169,0.000153029,0.000017,9.023601463,1.96E-17,gain,yes,-0.000112029,0.0000288,-3.888458873,0.00012345,neg,ns,0.030003557,0.008440562,3.554687022,0.000437416,pos,ns,3.359104898,-0.001621185,0.00029027,-5.585087332,5.11E-08,neg,yes,0.638171122,Jmjd1c,Jmjd1c_Exon,10,67218058,67218107,67218058,67218059,50,+,CGATCCTTCTATGGTTCAAATGACCTTTCTAGATGATGTTGTTCACTCTT,"Exon (Jmjd1c-211/Jmjd1c, exon 6 of 26)",10,67096492,67224962,128471,1,Jmjd1c-210,121566,Jmjd1c-210;Jmjd1c-211;Jmjd1c-201;Jmjd1c-205;Jmjd1c-206;Jmjd1c-202,Jmjd1c;Jmjd1c;Jmjd1c;Jmjd1c;Jmjd1c;Jmjd1c,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,9,108829,ENSMUSG00000037876,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9940,cg24810859,0.0000243,0.0000124,1.96007376,0.0508827,gain,ns,0.0000819,0.0000211,3.888395999,0.00012348,pos,ns,0.014688893,0.006169562,2.380864696,0.017875854,pos,ns,1.747733203,-0.000195889,0.000212171,-0.923263192,0.35658811,neg,ns,0.590990828,Hs6st2,Hs6st2_Exon,X,51680335,51680384,51680335,51680336,50,-,CGATCACGGCAAATAGGAAGAGCATCACCAAAGCTAGCAGCAGCTTGTTG,"Exon (Hs6st2-201/Hs6st2, exon 2 of 5)",20,51387212,51681703,294492,2,Hs6st2-201,1319,Hs6st2-201;Hs6st2-202;Hs6st2-204;Hs6st2-205;Hs6st2-203,Hs6st2;Hs6st2;Hs6st2;Hs6st2;Hs6st2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,6,50786,ENSMUSG00000062184,conserved gene and region,X,51680149,51680343,195,*,195,20,0.620512821,1.071428571,0.102564103,8.60E-16,CpGisland,TRUE,U3,Pr-B
17128,cg20393486,-0.00000688,0.0000137,-0.501985287,0.616034218,loss,ns,-0.0000905,0.0000233,-3.886775653,0.000124268,neg,ns,0.034758708,0.006820669,5.096084871,0.000000604,pos,ns,6.218981218,-0.000892135,0.000234562,-3.803402863,0.000171894,neg,ns,0.69108079,Ubqln4,Ubqln4_Exon,3,88563295,88563344,88563295,88563296,50,+,CGAACCCCTTTGGGATCAATGCGGCTAGCCTGGGGTCAGGTATGTCCTAG,"Exon (Ubqln4-201/Ubqln4, exon 6 of 11)",3,88553758,88569725,15968,1,Ubqln4-201,9537,Ubqln4-201;Ubqln4-204;Ubqln4-202;Ubqln4-205,Ubqln4;Ubqln4;Ubqln4;Ubqln4,0;0;0;-563,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,94232,ENSMUSG00000008604,conserved gene and region,3,88563137,88563317,181,*,181,12,0.674033149,0.607212748,0.066298343,0.0000002,CpGisland,TRUE,U10,Tr-S
19838,cg22572209,-0.0000134,0.0000118,-1.138622461,0.2557398,loss,ns,0.0000778,0.00002,3.884463872,0.000125401,pos,ns,0.013436845,0.005866296,2.290516139,0.02266251,pos,ns,1.64469199,-0.000368881,0.000201741,-1.828484009,0.068437716,neg,ns,0.634469218,Nlgn3,Nlgn3_Exon,X,101302221,101302270,101302221,101302222,50,-,CGTTTCCTGCCCCCTGAACCACCCCCATCCTGGTCGGGCATCCGGAACGC,"Exon (Gm21986-201/Gm21986-201, exon 5 of 11)",20,101299168,101325963,26796,1,Nlgn3-202,3053,Med12-204;Med12-203;Med12-201;Med12-202;Med12-208;Med12-206;Nlgn3-202;Nlgn3-203;Nlgn3-206;Nlgn3-201;Nlgn3-205,Med12;Med12;Med12;Med12;Med12;Med12;Nlgn3;Nlgn3;Nlgn3;Nlgn3;Nlgn3,0;0;0;0;0;5652;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,Exon,11,16,245537,ENSMUSG00000031302,conserved gene and region,X,101302196,101302269,74,*,74,8,0.675675676,1.027777778,0.108108108,0.0000012,CpGisland,TRUE,NA,NRS
5806,cg05825700,0.00000881,0.0000244,0.360862632,0.718447922,gain,ns,0.00016101,0.0000415,3.882837279,0.000126203,pos,ns,0.02183987,0.012148431,1.797752309,0.073189249,pos,ns,1.13555271,0.000429121,0.000417784,1.027138008,0.305156261,pos,ns,0.502990389,Kcns2,Kcns2_Exon,15,34838807,34838856,34838807,34838808,50,+,CGAGTACTGGGGCATCAACGAGTTCTTCATTGACTCCTGCTGCAGCTACA,"Exon (Kcns2-201/Kcns2, exon 2 of 2)",15,34837355,34843407,6053,1,Kcns2-201,1452,Kcns2-201;Kcns2-202,Kcns2;Kcns2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,16539,ENSMUSG00000050963,conserved gene and region,15,34838414,34839020,607,*,607,42,0.579901153,0.823981901,0.069192751,2.44E-25,CpGisland,TRUE,U13,Hc-P
8144,cg20499794,-0.00000575,0.0000101,-0.569373052,0.569515322,loss,ns,0.0000666,0.0000171,3.882477308,0.000126382,pos,ns,0.003598347,0.005022786,0.716404608,0.474280893,pos,ns,0.323964371,0.00011957,0.000172733,0.692224548,0.489314492,pos,ns,0.39596656,Pax2,Pax2_Intron,19,44797298,44797347,44797298,44797299,50,-,CGCTGGGCAGGGCCTCGGTATCAGCCTCACTTTAACTTCAGGGTCATTAA,"Intron (Pax2-203/Pax2, intron 5 of 9)",19,44756045,44837851,81807,1,Pax2-203,41253,Pax2-203;Pax2-201;Pax2-202,Pax2;Pax2;Pax2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,35,166,18504,ENSMUSG00000004231,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
22610,cg27039984,-0.0000771,0.00000878,-8.784308947,1.09E-16,loss,yes,-0.0000579,0.0000149,-3.881853934,0.000126691,neg,ns,0.000673573,0.004370445,0.154119987,0.877615414,pos,ns,0.056695757,-0.000462059,0.000150299,-3.074257657,0.002297942,neg,ns,0.901910906,Kctd2,Kctd2_Exon,11,115429341,115429390,115429389,115429390,50,-,TTGTCTCCAGAGAACTAAATAATTCTACCAATGGCATCGTCATAGAGCCG,Promoter (<=1kb),11,115429353,115430201,849,1,Kctd2-204,0,Kctd2-201;Kctd2-202;Kctd2-203;Kctd2-204,Kctd2;Kctd2;Kctd2;Kctd2,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,70382,ENSMUSG00000016940,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21779,cg10190382,0.0000557,0.0000131,4.256785434,0.0000275,gain,ns,-0.0000863,0.0000222,-3.88138505,0.000126924,neg,ns,-0.000122901,0.006511905,-0.0188733,0.98495432,neg,ns,0.00658391,-0.000336719,0.000223944,-1.503588466,0.133705415,neg,ns,0.137897665,Pde4d,Pde4d_Intron,13,109117683,109117732,109117683,109117684,50,-,CGTGGGTGACTTGGAGAGTTTGGAGCAAAATGTTCAGCAATCCTTGAGAG,"Intron (Pde4d-209/Pde4d, intron 3 of 16)",13,108654177,109951474,1297298,1,Pde4d-209,463506,Pde4d-209;Pde4d-220;Pde4d-210;Pde4d-214;Pde4d-208,Pde4d;Pde4d;Pde4d;Pde4d;Pde4d,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,7,238871,ENSMUSG00000021699,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
4514,cg10817504,0.000012,0.00000615,1.946571796,0.052489191,gain,ns,-0.0000406,0.0000105,-3.880402448,0.000127414,neg,ns,0.000436584,0.003061969,0.1425826,0.886712466,pos,ns,0.052217186,-0.00037274,0.000105301,-3.539758175,0.00046189,neg,ns,0.741093373,Calu,Calu_Exon,6,29361441,29361490,29361441,29361442,50,-,CGTTTCCTGGGAGGAGTATAAAAATGCCACCTACGGCTACGTTTTAGGTA,Promoter (<=1kb),6,29361461,29373352,11892,1,Calu-204,0,Calu-207;Calu-208;Calu-206;Calu-201;Calu-202;Calu-209;Calu-204,Calu;Calu;Calu;Calu;Calu;Calu;Calu,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,9,12321,ENSMUSG00000029767,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3226,cg16023341,0.000501939,0.0000203,24.78524169,1.60E-75,gain,yes,-0.000133463,0.0000344,-3.879206836,0.000128013,neg,ns,0.026365903,0.010079401,2.615820445,0.009336984,pos,ns,2.029793366,0.000353042,0.00034663,1.018498389,0.30923537,pos,ns,0.663412812,Cadps2,Cadps2_Intron,6,23273236,23273285,23273284,23273285,50,+,AATAGAAATTGACAAACCTCATCTCCTAAATAGTGCAGCTGAGCCGGGCG,"Intron (Cadps2-213/Cadps2, intron 28 of 29)",6,23262773,23839137,576365,2,Cadps2-213,565852,Cadps2-213;Cadps2-205;Cadps2-212;Cadps2-201;Cadps2-209;Cadps2-206;Cadps2-211;Cadps2-207;Cadps2-202;Cadps2-210,Cadps2;Cadps2;Cadps2;Cadps2;Cadps2;Cadps2;Cadps2;Cadps2;Cadps2;Cadps2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,15,320405,ENSMUSG00000017978,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6741,cg18994669,-0.0000278,0.0000107,-2.589702881,0.010059263,loss,ns,0.0000706,0.0000182,3.878718441,0.000128258,pos,ns,-0.005152776,0.005333973,-0.966029615,0.334782374,neg,ns,0.475237415,0.000467425,0.000183435,2.548181208,0.011310804,pos,ns,0.530254378,Lgi1,Lgi1_Exon,19,38264995,38265044,38264995,38264996,50,+,CGAAGCCAAAATGCCCTGCCGTGTGTACTTGTACCAAAGATAATGCTTTA,Promoter (<=1kb),19,38264536,38312214,47679,1,Lgi1-207,459,Lgi1-207;Lgi1-201;Lgi1-209;Lgi1-206;Lgi1-205;Lgi1-204;Lgi1-208;Lgi1-203;Lgi1-202,Lgi1;Lgi1;Lgi1;Lgi1;Lgi1;Lgi1;Lgi1;Lgi1;Lgi1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,7,56839,ENSMUSG00000067242,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1958,cg24956561,-0.0000411,0.00000828,-4.96375832,0.00000114,loss,yes,0.0000545,0.0000141,3.87763216,0.000128805,pos,ns,0.003025777,0.004119732,0.734459837,0.463223711,pos,ns,0.334209219,-0.000284813,0.000141677,-2.010297815,0.045265555,neg,ns,0.786648794,Tfec,Tfec_Intergenic_downstream,6,16606918,16606967,16606966,16606967,50,-,CCGCTGACTTCTCTGATCAACACATAATTATCTCTGAATAAAAATGCACG,Distal Intergenic,6,16834692,16835263,572,2,Tfec-204,228345,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,19,23,21426,ENSMUSG00000029553,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5851,cg00023292,0.0000129,0.00000308,4.1813412,0.0000378,gain,ns,-0.0000203,0.00000523,-3.877197529,0.000129025,neg,ns,-0.001186743,0.001531406,-0.774936864,0.438967654,neg,ns,0.35756748,0.0000226,0.0000527,0.429414632,0.667919803,pos,ns,0.877685025,Cnot4,Cnot4_Exon,6,35023337,35023386,35023337,35023338,50,+,CGTCCATCTCTGTGAGGGCCTGAAGGGATTTTAGCCAGTGTGGAGGATTG,"Exon (Cnot4-205/Cnot4, exon 1 of 1)",6,35022065,35024864,2800,2,Cnot4-205,1478,Cnot4-205;Cnot4-206;Cnot4-202;Cnot4-203,Cnot4;Cnot4;Cnot4;Cnot4,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,10,53621,ENSMUSG00000038784,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2960,cg19275555,0.00000559,0.00000626,0.892887942,0.372609782,gain,ns,0.0000412,0.0000106,3.874736192,0.000130274,pos,ns,0.005877093,0.003114235,1.887170649,0.0600715,pos,ns,1.221331523,0.0000944,0.000107098,0.881193162,0.378895965,pos,ns,0.883157222,Lrmda,Lrmda_Intron,14,22168233,22168282,22168233,22168234,50,+,CGACTCATAAATAAATGGTTACCCTTTGGTGCTTGCAGTTTTCATTAAAG,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,148521,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206,Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20585,cg25513455,0.0000172,0.00000499,3.449818321,0.000638681,gain,ns,-0.0000329,0.00000848,-3.874323084,0.000130485,neg,ns,-0.001202068,0.002485654,-0.483602371,0.629009503,neg,ns,0.201342793,-0.000134818,0.0000855,-1.577162487,0.115778022,neg,ns,0.858505927,Caprin1,Caprin1_Exon,2,103768396,103768445,103768444,103768445,50,+,AAAATATTACCTCGTGGGGCTCCCCGTGGTCCACTCTGCCCAGAGCCTCG,"Exon (Caprin1-201/Caprin1, exon 18 of 19)",2,103762941,103797649,34709,2,Caprin1-201,29204,Caprin1-201;Caprin1-202;Caprin1-209;Caprin1-210;Caprin1-214;Caprin1-204;Caprin1-206;Caprin1-208;Caprin1-205,Caprin1;Caprin1;Caprin1;Caprin1;Caprin1;Caprin1;Caprin1;Caprin1;Caprin1,0;0;0;0;4239;5827;5267;10923;7563,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,53872,ENSMUSG00000027184,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19862,cg12559547,0.0000196,0.0000084,2.335655988,0.020146656,gain,ns,-0.0000553,0.0000143,-3.873414055,0.00013095,neg,ns,0.003262846,0.004179939,0.780596635,0.435635415,pos,ns,0.360876821,-0.000560596,0.000143748,-3.899856887,0.00011804,neg,ns,0.815440336,Stard10,Stard10_threeUTR,7,101343929,101343978,101343929,101343930,50,+,CGGAAAGACTTGGTCCGAGCTGTGTCCATCCAGACGGGCTACCTCATCCA,3' UTR,7,101317086,101346626,29541,1,Stard10-202,26843,Arap1-204;Stard10-202;Stard10-203;Stard10-201;Stard10-211;Stard10-205;Stard10-210;Stard10-204;Stard10-206;Stard10-207;Stard10-208;Stard10-209,Arap1;Stard10;Stard10;Stard10;Stard10;Stard10;Stard10;Stard10;Stard10;Stard10;Stard10;Stard10,-4089;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,5,6,56018,ENSMUSG00000030688,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
273,cg27242415,0.0000273,0.0000126,2.170245036,0.030747278,gain,ns,0.0000827,0.0000214,3.872601887,0.000131367,pos,ns,0.019699936,0.006259554,3.147179082,0.001808782,pos,ns,2.742613858,-0.000223709,0.000215266,-1.039225483,0.299509748,neg,ns,0.314270867,Npas4,Npas4_threeUTR,19,4984612,4984661,4984612,4984613,50,-,CGGAATTGAAATCCCGTTACTGGTGTGTAGAGAATTCTACGTGGGTGTCA,3' UTR,19,4984355,4989971,5617,2,Npas4-202,5310,Npas4-202;Npas4-201;Npas4-203,Npas4;Npas4;Npas4,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,14,16,225872,ENSMUSG00000045903,conserved gene and region,19,4984402,4984672,271,*,271,24,0.63099631,0.889740082,0.088560886,2.74E-17,CpGisland,TRUE,U13,Hc-P
14039,cg23165895,-0.0000779,0.0000135,-5.786333713,1.76E-08,loss,yes,0.0000885,0.0000229,3.871819109,0.00013177,pos,ns,-0.01273123,0.006697536,-1.900882557,0.058244702,neg,ns,1.234743569,0.000587072,0.000230328,2.548853289,0.011289488,pos,ns,0.555659618,Lnpk,Lnpk_Intergenic_downstream,2,74408844,74408893,74408892,74408893,50,-,TTAGCCTGCAGCTAAAATTGCTTGTTTATCAGATGGTGCCTGGTTTAGCG,Distal Intergenic,2,74520341,74533106,12766,2,Lnpk-204,124262,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,15,16,69605,ENSMUSG00000009207,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12792,cg02376561,0.000244286,0.0000244,10.01841591,1.19E-20,gain,yes,-0.000160254,0.0000414,-3.868567231,0.000133457,neg,ns,0.064091241,0.012136004,5.28108264,0.000000242,pos,ns,6.615804432,-0.000641533,0.000417356,-1.537136177,0.125279983,neg,ns,0.588528264,Cps1,Cps1_Exon,1,67198294,67198343,67198342,67198343,50,+,TCTGCAGGCAGCAGTGTGGAATTTGATTGGTGTGCTGTCTCTAGTATCCG,"Exon (Cps1-201/Cps1, exon 25 of 38)",1,67123026,67231259,108234,1,Cps1-201,75268,Cps1-201,Cps1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,227231,ENSMUSG00000025991,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21684,cg04487404,0.0000292,0.0000138,2.108288613,0.035808269,gain,ns,0.0000909,0.0000235,3.868565224,0.000133458,pos,ns,0.024124063,0.006883093,3.504829005,0.000524257,pos,ns,3.280455529,-0.000420947,0.000236709,-1.778330182,0.076329681,neg,ns,0.308514752,Brwd3,Brwd3_Intron,X,108832824,108832873,108832872,108832873,50,+,TCCACTAATCCGGAACTCCGGGCTGTTACCAACGCTGTCATTGGCCAGCG,"Intron (Brwd3-205/Brwd3, intron 4 of 40)",20,108737016,108834348,97333,2,Brwd3-205,1475,Brwd3-205;Brwd3-201;Brwd3-204;Brwd3-203;Brwd3-202,Brwd3;Brwd3;Brwd3;Brwd3;Brwd3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,5,382236,ENSMUSG00000063663,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
8142,cg27505819,0.0000866,0.00000839,10.32779001,1.10E-21,gain,yes,-0.0000551,0.0000143,-3.864178399,0.000135766,neg,ns,0.020031899,0.004174871,4.79820821,0.00000249,pos,ns,5.603400077,-0.00064964,0.000143573,-4.524795234,0.00000862,neg,ns,0.790424091,Tmem25,Tmem25_threeUTR,9,44796530,44796579,44796530,44796531,50,-,CGCACCAGGGCAAACAGGACAACCAGGAGGCCTGGGCCCTGAGCTTCCTG,3' UTR,9,44793769,44799233,5465,2,Tmem25-204,2654,Ift46-201;Ift46-215;Tmem25-204;Tmem25-202;Tmem25-203;Tmem25-201;Tmem25-208;Tmem25-206;Tmem25-205;Tmem25-207;Ttc36-201;Ttc36-202,Ift46;Ift46;Tmem25;Tmem25;Tmem25;Tmem25;Tmem25;Tmem25;Tmem25;Tmem25;Ttc36;Ttc36,23620;23521;0;0;0;0;0;2626;2629;2627;6493;5233,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,71687,ENSMUSG00000002032,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26738,cg20338328,0.0000581,0.00000441,13.1655659,9.53E-32,gain,yes,-0.000029,0.0000075,-3.864105046,0.000135805,neg,ns,0.006714133,0.002197064,3.055956801,0.0024385,pos,ns,2.61287725,-0.000250997,0.0000756,-3.321959132,0.001000788,neg,ns,0.815682493,Huwe1,Huwe1_Exon,X,151923475,151923524,151923523,151923524,50,+,CCAGGTTCCTCCGGTTTAGGCTCAGCTAGCAGCATCCAGGCAGCTGTTCG,"Exon (Huwe1-201/Huwe1, exon 72 of 83)",20,151803327,151935417,132091,1,Huwe1-201,120148,Huwe1-201;Huwe1-202;Huwe1-209;Huwe1-205;Huwe1-213,Huwe1;Huwe1;Huwe1;Huwe1;Huwe1,0;0;2193;0;-734,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,22,28,59026,ENSMUSG00000025261,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27403,cg24762949,0.0000696,0.000015,4.658679275,0.00000473,gain,ns,-0.0000981,0.0000254,-3.86310557,0.000136337,neg,ns,0.047703657,0.007441046,6.410880795,5.38E-10,pos,ns,9.268826414,-0.001973864,0.000255897,-7.713511264,1.69E-13,neg,yes,0.59181159,Arfgef2,Arfgef2_Exon,2,166861641,166861690,166861689,166861690,50,+,CTAAAACAGCCAAAGCTCTGATGGAGGCTGTGAGCCATGCCAAAGCCCCG,"Exon (Arfgef2-201/Arfgef2, exon 19 of 39)",2,166805588,166898052,92465,1,Arfgef2-201,56053,Arfgef2-201,Arfgef2,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,99371,ENSMUSG00000074582,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20331,cg10992228,0.000134578,0.00000842,15.99175249,2.15E-42,gain,yes,-0.0000552,0.0000143,-3.861957583,0.000136949,neg,ns,-0.00379412,0.004188469,-0.905848836,0.365719379,neg,ns,0.436852026,0.00038143,0.000144041,2.648063988,0.008509621,pos,ns,0.611055107,Dcakd,Dcakd_Intron,11,102998933,102998982,102998981,102998982,50,+,AACTGGGACTGTGGAAGCCACAGCTGTCGTCCTCATTTTTCACCTTATCG,"Intron (Dcakd-201/Dcakd, intron 3 of 4)",11,102994047,103017168,23122,2,Dcakd-201,18186,Dcakd-201;Dcakd-203;Dcakd-205,Dcakd;Dcakd;Dcakd,0;-1385;29322,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,4,68087,ENSMUSG00000020935,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10444,cg08481056,-0.00000265,0.00000322,-0.823237592,0.411005738,loss,ns,0.0000212,0.00000548,3.861809513,0.000137029,pos,ns,0.004786016,0.001604997,2.981948192,0.003091308,pos,ns,2.509857763,-0.000117082,0.0000552,-2.121221063,0.034696574,neg,ns,0.925338189,Npas3,Npas3_Intron,12,53566838,53566887,53566886,53566887,50,+,TGGCAGCTGGTGATGCATTATAGAGACATTGAGCTAATCGATTAAAACCG,"Intron (Npas3-204/Npas3, intron 2 of 10)",12,53248157,54069532,821376,1,Npas3-204,318681,Npas3-204;Npas3-201;Npas3-203,Npas3;Npas3;Npas3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,83,103,27386,ENSMUSG00000021010,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
356,cg14142021,-0.0000094,0.00000366,-2.572403563,0.010564804,loss,ns,0.000024,0.00000621,3.861512141,0.000137188,pos,ns,0.007224268,0.001819488,3.970493895,0.0000892,pos,ns,4.049593948,-0.000100334,0.0000626,-1.603499535,0.10984274,neg,ns,0.940385285,Klhl29,Klhl29_Intron,12,5239900,5239949,5239900,5239901,50,+,CGCGGGTTGTGCAGTGTGAACAATTCACTTTCGTTAAGTACCATATGGCC,"Intron (Klhl29-201/Klhl29, intron 2 of 13)",12,5077472,5375682,298211,2,Klhl29-201,135733,Klhl29-201;Klhl29-202,Klhl29;Klhl29,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,23,208439,ENSMUSG00000020627,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2384,cg12279668,-0.000012,0.00000591,-2.033836231,0.04281934,loss,ns,0.0000388,0.00001,3.859156433,0.000138455,pos,ns,-0.002524806,0.002942952,-0.857916099,0.391601591,neg,ns,0.407155552,0.000146793,0.000101208,1.450412577,0.147954534,pos,ns,0.061989312,Tfap2b,Tfap2b_Exon,1,19228450,19228499,19228450,19228451,50,+,CGAAAAATGGGGGGAGATCTTTGCGAGAAAGGCTAGAAAAAATCGGTTTG,"Exon (Tfap2b-201/Tfap2b, exon 5 of 7)",1,19208914,19238576,29663,1,Tfap2b-201,19536,Tfap2b-201;Tfap2b-204;Tfap2b-202,Tfap2b;Tfap2b;Tfap2b,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,40,21419,ENSMUSG00000025927,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3223,cg18913902,0.000475135,0.0000171,27.83504301,2.58E-86,gain,yes,-0.000111834,0.000029,-3.85644967,0.000139925,neg,ns,0.041149948,0.008495755,4.843589338,0.00000202,pos,ns,5.695298345,0.0000655,0.000292168,0.224082276,0.822840894,pos,ns,0.433580312,Cadps2,Cadps2_Intron,6,23273022,23273071,23273070,23273071,50,+,GCCAGGAGTTGCCACTGACTATGGAAATTGCCACACCAGGGCTATAAACG,"Intron (Cadps2-213/Cadps2, intron 28 of 29)",6,23262773,23839137,576365,2,Cadps2-213,566066,Cadps2-213;Cadps2-205;Cadps2-212;Cadps2-201;Cadps2-209;Cadps2-206;Cadps2-211;Cadps2-207;Cadps2-202;Cadps2-210,Cadps2;Cadps2;Cadps2;Cadps2;Cadps2;Cadps2;Cadps2;Cadps2;Cadps2;Cadps2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,15,320405,ENSMUSG00000017978,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24825,cg12174936,-0.0000553,0.0000139,-3.990307571,0.0000824,loss,ns,-0.0000908,0.0000236,-3.854475851,0.000141006,neg,ns,0.050664293,0.006901857,7.340675218,1.88E-12,pos,yes,11.72549153,-0.002290064,0.000237354,-9.648292741,1.97E-19,neg,yes,0.605421579,Phc2,Phc2_Exon,4,128743469,128743518,128743517,128743518,50,+,TAAACCACCACAGGCCATTGTGAAACCCCAAATCCTGACGCATGTTATCG,"Exon (Phc2-201/Phc2, exon 10 of 15)",4,128654702,128752881,98180,1,Phc2-201,88767,Phc2-201;Phc2-203;Phc2-209;Phc2-202;Phc2-208;Phc2-205;Phc2-210;Phc2-204;Phc2-206,Phc2;Phc2;Phc2;Phc2;Phc2;Phc2;Phc2;Phc2;Phc2,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,13,54383,ENSMUSG00000028796,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4076,cg22124077,0.000034,0.0000114,2.981998176,0.003090817,gain,ns,0.0000746,0.0000194,3.851621324,0.000142584,pos,ns,0.017276768,0.005675507,3.044092584,0.002533801,pos,ns,2.596227411,-0.000063,0.00019518,-0.322659162,0.747170892,neg,ns,0.628397052,Gm12071,Gm12071_Intergenic_downstream,11,26725465,26725514,26725465,26725466,50,-,CGACATTACAGTCCCTGCTGCTTTTAGCTGTATCGATCCGATGCCTGACC,Distal Intergenic,11,26712905,26713373,469,1,Gm12071-201,12609,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,5,606714,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27886,cg00597719,0.0000509,0.0000113,4.504389415,0.00000944,gain,ns,-0.0000739,0.0000192,-3.849646936,0.000143685,neg,ns,-0.003024779,0.005622707,-0.537957701,0.590992251,neg,ns,0.228418214,-0.0000274,0.000193364,-0.141461724,0.88759708,neg,ns,0.858239014,Prox1,Prox1_Intron,1,190128881,190128930,190128929,190128930,50,+,ACATGCATCAGCTGTTGGGCTTTTGTTACGGGTATTGTAGAACTAATCCG,"Intron (Prox1-202/Prox1, intron 4 of 4)",1,190118035,190170714,52680,2,Prox1-202,41784,Prox1-202;Prox1-201;Prox1-203,Prox1;Prox1;Prox1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,59,19130,ENSMUSG00000010175,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14311,cg17526723,0.000106655,0.0000148,7.201508932,4.54E-12,gain,yes,-0.0000968,0.0000252,-3.849283932,0.000143888,neg,ns,0.021613066,0.007371143,2.932118817,0.003617213,pos,ns,2.441625953,-0.00081171,0.000253493,-3.202099153,0.001505963,neg,ns,0.374933603,Smg6,Smg6_Intron,11,75147328,75147377,75147376,75147377,50,+,AGCCAGACACATCTGTCTGGCCATATGCGTGAACCCTGGAGTCTGTGCCG,"Intron (Smg6-201/Smg6, intron 15 of 18)",11,74925823,75164448,238626,1,Smg6-201,221505,Smg6-201;Smg6-202,Smg6;Smg6,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,34,103677,ENSMUSG00000038290,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14896,cg21421559,-0.0000338,0.00001,-3.361715002,0.000871616,loss,ns,0.0000656,0.0000171,3.846436201,0.000145493,pos,ns,0.001726749,0.004999936,0.345354183,0.730062338,pos,ns,0.136640055,-0.0000344,0.000171947,-0.199876393,0.841708304,neg,ns,0.771702506,Cacng2,Cacng2_Exon,15,78118827,78118876,78118875,78118876,50,-,CTGAAGGCAGCGAAAGCACCAACGGTGGTTAAAAGCATTTGAACACCTCG,"Exon (Cacng2-201/Cacng2, exon 1 of 4)",15,77991748,78120028,128281,2,Cacng2-201,1152,Cacng2-201,Cacng2,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,6,12300,ENSMUSG00000019146,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
6457,cg24903784,-0.00000966,0.0000113,-0.852069215,0.394833449,loss,ns,0.0000741,0.0000193,3.845538159,0.000146002,pos,ns,0.01008185,0.005641537,1.787075047,0.074902285,pos,ns,1.125504933,-0.00026046,0.000194012,-1.34249275,0.180418532,neg,ns,0.559349624,Zfp536,Zfp536_Intron,7,37343010,37343059,37343058,37343059,50,+,CTAAAAGCCATCTATCTCTCTTATACCACATGATCATCGATTCATAATCG,"Intron (Zfp536-211/Zfp536, intron 3 of 3)",7,37318024,37568390,250367,2,Zfp536-211,225331,Zfp536-211,Zfp536,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,73,112,243937,ENSMUSG00000043456,conserved gene and region,7,37343007,37343158,152,*,152,10,0.546052632,0.904761905,0.065789474,0.00000314,CpGisland,TRUE,NA,NRS
24824,cg12338698,0.00000649,0.0000136,0.478791523,0.632424476,gain,ns,-0.0000886,0.000023,-3.844752817,0.000146449,neg,ns,0.058126152,0.006751314,8.609605634,3.76E-16,pos,yes,15.42471765,-0.002078452,0.000232177,-8.952008042,3.28E-17,neg,yes,0.54479144,Phc2,Phc2_Exon,4,128743459,128743508,128743507,128743508,50,+,ATGGTGAGAATAAACCACCACAGGCCATTGTGAAACCCCAAATCCTGACG,"Exon (Phc2-201/Phc2, exon 10 of 15)",4,128654702,128752881,98180,1,Phc2-201,88757,Phc2-201;Phc2-203;Phc2-209;Phc2-202;Phc2-208;Phc2-205;Phc2-210;Phc2-204;Phc2-206,Phc2;Phc2;Phc2;Phc2;Phc2;Phc2;Phc2;Phc2;Phc2,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,13,54383,ENSMUSG00000028796,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22500,cg18312869,0.00000952,0.00000794,1.198874426,0.231492403,gain,ns,0.0000519,0.0000135,3.84434649,0.000146681,pos,ns,0.005736056,0.003953074,1.451036653,0.147780797,pos,ns,0.830381997,0.0000794,0.000135946,0.583959667,0.559672115,pos,ns,0.655805376,Gm13975,Gm13975_Intron,2,114872413,114872462,114872413,114872414,50,-,CGATGCATGGCTTGCAGAGCAGATGTTCGCAAGGATGCAGTGATTATTGA,"Intron (Gm13974-201/Gm13974-201, intron 2 of 8)",2,114708112,114708893,782,1,Gm13975-201,164350,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,9,100043219,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1421,cg14368225,0.0000132,0.00000395,3.35270158,0.000899461,gain,ns,-0.0000258,0.00000671,-3.843456292,0.00014719,neg,ns,0.003384072,0.001966686,1.720697373,0.086303578,pos,ns,1.063971197,-0.0000266,0.0000676,-0.392795721,0.694740324,neg,ns,0.896240511,Cntf,Cntf_threeUTR,19,12765306,12765355,12765354,12765355,50,-,TCTGAACGAATCTTCCTTGCTAGCCAGATAGAGCGGCTACAGAGGTCCCG,Promoter (<=1kb),19,12763660,12765632,1973,2,Cntf-201,277,Cntf-201;Zfp91-203;Zfp91-201,Cntf;Zfp91;Zfp91,0;0;30771,TRUE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,2,12803,ENSMUSG00000079415,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14880,cg03039118,-0.0000217,0.00000509,-4.26373199,0.0000267,loss,ns,-0.0000332,0.00000864,-3.841504267,0.000148311,neg,ns,0.000867863,0.002532345,0.342711245,0.732047964,pos,ns,0.135460463,-0.000364617,0.0000871,-4.186808546,0.0000369,neg,ns,0.781025287,Flot2,Flot2_fiveUTR,11,78054757,78054806,78054805,78054806,50,-,CATGCCCCTGTTTTGCGTTTCTTGGCAGGATTTCCCTAGAGATTATGACG,5' UTR,11,78037931,78060434,22504,1,Flot2-201,16826,Flot2-201;Flot2-205;Flot2-203;Flot2-202;Flot2-204,Flot2;Flot2;Flot2;Flot2;Flot2,0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,9,13,14252,ENSMUSG00000061981,conserved gene but different region,11,78054805,78054920,116,*,116,9,0.612068966,0.836538462,0.077586207,0.00000318,CpGisland,TRUE,NA,NRS
13937,cg05998656,-7.29E-08,0.0000141,-0.005176456,0.995873134,loss,ns,0.0000919,0.0000239,3.841455828,0.000148339,pos,ns,0.008661396,0.007006474,1.236198912,0.217320468,pos,ns,0.662899369,-0.000186442,0.000240952,-0.773772524,0.43965499,neg,ns,0.771186027,Atp2b3,Atp2b3_Exon,X,73559845,73559894,73559893,73559894,50,-,CTCATTTTCTCTCCCACAGATGGAGGTAGTGAGTACCTTCAAGAGAAGCG,"Exon (Atp2b3-203/Atp2b3, exon 21 of 22)",20,73503086,73571005,67920,1,Atp2b3-202,56759,Atp2b3-201;Atp2b3-202;Atp2b3-203,Atp2b3;Atp2b3;Atp2b3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,3,320707,ENSMUSG00000031376,conserved gene and region,X,73559893,73560008,116,*,116,9,0.612068966,0.892307692,0.077586207,0.00000318,CpGisland,TRUE,NA,NRS
5398,cg13912499,-0.0000373,0.00000863,-4.318436067,0.0000212,loss,ns,0.0000563,0.0000147,3.841127575,0.000148529,pos,ns,0.006102492,0.004293198,1.421432785,0.156196179,pos,ns,0.806329593,-0.0000991,0.000147643,-0.671503248,0.502400067,neg,ns,0.880002078,Mvb12b,Mvb12b_Intron,2,33788860,33788909,33788908,33788909,50,+,TCAGAAATTATACAAGTAATAAATCCTTGAAAAAACTAAGCGTACTCCCG,"Intron (Mvb12b-201/Mvb12b, intron 7 of 9)",2,33729953,33887946,157994,2,Mvb12b-201,99037,Mvb12b-201;Mvb12b-205;Mvb12b-204,Mvb12b;Mvb12b;Mvb12b,0;-101;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,28,47,72543,ENSMUSG00000038740,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6271,cg20382379,-0.00010608,0.0000141,-7.503849036,6.61E-13,loss,yes,0.0000922,0.000024,3.839667707,0.000149374,pos,ns,-0.014516438,0.007036031,-2.063157005,0.039930101,neg,ns,1.398699594,0.000426725,0.000241969,1.763554961,0.078791992,pos,ns,0.698964313,Tshz3,Tshz3_Intron,7,36707548,36707597,36707596,36707597,50,+,TCTGACACATTTTTTTCCTTTAAAATTTACTATGCAGATGTCAAGCTGCG,"Intron (Tshz3-201/Tshz3, intron 1 of 1)",7,36698118,36773553,75436,1,Tshz3-201,9430,Tshz3-201,Tshz3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,58,243931,ENSMUSG00000021217,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24495,cg18518020,0.0000274,0.0000199,1.375267697,0.170041484,gain,ns,0.000129861,0.0000338,3.839407588,0.000149525,pos,ns,0.019557349,0.00990906,1.973683644,0.04930545,pos,ns,1.307105077,-0.000316299,0.000340772,-0.928183933,0.35403429,neg,ns,0.589890136,Kcna1,Kcna1_Exon,6,126642210,126642259,126642258,126642259,50,+,TGTCACAGGGTACATGTCACCGTATCCTACAGTGGTCATGGACACCACCG,"Exon (Kcna1-201/Kcna1, exon 2 of 2)",6,126640397,126644796,4400,2,Kcna1-201,2537,Kcna1-201;Kcna1-202;Kcna1-203,Kcna1;Kcna1;Kcna1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,12,16485,ENSMUSG00000047976,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
21326,cg19519638,-0.00000178,0.00000186,-0.955683938,0.339976596,loss,ns,0.0000122,0.00000317,3.838460276,0.000150077,pos,ns,0.003430764,0.000927494,3.698961117,0.000256027,pos,ns,3.591714887,-0.0000733,0.0000319,-2.296555085,0.02231077,neg,ns,0.954590728,Nfat5,Nfat5_threeUTR,8,107339249,107339298,107339249,107339250,50,+,CGACGAGATTGTGAAGAATCTAATATGGATATATTTGATGCCGACAGTGC,3' UTR,8,107293470,107372227,78758,1,Nfat5-213,45779,Nfat5-213;Nfat5-214;Nfat5-206;Nfat5-211;Nfat5-203;Nfat5-201;Nfat5-209;Nfat5-205;Nfat5-202;Nfat5-207,Nfat5;Nfat5;Nfat5;Nfat5;Nfat5;Nfat5;Nfat5;Nfat5;Nfat5;Nfat5,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,13,17,54446,ENSMUSG00000003847,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15168,cg02788145,-0.00000656,0.0000051,-1.28778762,0.198780399,loss,ns,0.0000332,0.00000866,3.838435147,0.000150091,pos,ns,0.007352512,0.002536955,2.898164097,0.004021118,pos,ns,2.395653214,-0.000239302,0.0000872,-2.742846909,0.006445208,neg,ns,0.889141406,Kcnj4,Kcnj4_Intron,15,79500321,79500370,79500369,79500370,50,-,AGCCCATATTATTATTTCAATTACCATCTGAATTAAAAGTTTGAGCAGCG,"Intron (Kcnj4-201/Kcnj4, intron 1 of 1)",15,79483714,79505241,21528,2,Kcnj4-201,4871,Kcnj4-201,Kcnj4,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,9,16520,ENSMUSG00000044216,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18496,cg13224508,0.000208752,0.0000193,10.81600334,2.40E-23,gain,yes,-0.000125845,0.0000328,-3.838060063,0.00015031,neg,ns,0.061271921,0.00960596,6.378531919,6.49E-10,pos,ns,9.18761209,-0.001160247,0.000330348,-3.512195337,0.000510482,neg,ns,0.683324868,Cnot6l,Cnot6l_threeUTR,5,96091605,96091654,96091653,96091654,50,+,GCACAACCATCTACATGCTTTCTCTCCTGCTCAGACATGATTTTGGCACG,3' UTR,5,96070333,96161990,91658,2,Cnot6l-210,70336,Cnot6l-210;Cnot6l-208;Cnot6l-201;Cnot6l-202;Cnot6l-203,Cnot6l;Cnot6l;Cnot6l;Cnot6l;Cnot6l,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,11,13,231464,ENSMUSG00000034724,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22820,cg17831448,0.000000783,0.0000109,0.071824932,0.942787547,gain,ns,0.0000711,0.0000185,3.836995774,0.000150933,pos,ns,0.004705801,0.005424989,0.867430488,0.386377134,pos,ns,0.412988583,0.0000758,0.000186565,0.406332351,0.684778776,pos,ns,0.802679297,Faah,Faah_Intron,4,115977640,115977689,115977640,115977641,50,+,CGGTCACTCTGGTGGTATAAATATGTTTATAGCGGACCAAGGGGAAATGA,"Intron (Faah-202/Faah, intron 13 of 14)",4,115967145,116017675,50531,2,Faah-202,39986,Faah-202,Faah,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,20,14073,ENSMUSG00000034171,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
21956,cg14133125,-0.000000213,0.00000378,-0.056469725,0.955003992,loss,ns,-0.0000246,0.00000642,-3.836965395,0.000150951,neg,ns,-0.001561737,0.001880733,-0.830387708,0.406958659,neg,ns,0.390449706,0.000041,0.0000647,0.633368986,0.526959699,pos,ns,0.886044509,Ap1g1,Ap1g1_Intron,8,109830542,109830591,109830542,109830543,50,-,CGTATCTGTCCCTAATGCTTGCTTTGTATGTTTTGTTCCTGTTGTCTGTT,"Intron (Ap1g1-202/Ap1g1, intron 6 of 23)",8,109778554,109864204,85651,1,Ap1g1-202,51988,Ap1g1-202;Ap1g1-201,Ap1g1;Ap1g1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,16,11765,ENSMUSG00000031731,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6328,cg01697072,0.00000205,0.00000171,1.198642237,0.231582582,gain,ns,-0.0000111,0.0000029,-3.836172319,0.000151417,neg,ns,0.004448515,0.000850048,5.233253863,0.000000307,pos,ns,6.512158407,-0.000185434,0.0000292,-6.343289897,7.95E-10,neg,yes,0.96588404,Golgb1,Golgb1_Exon,16,36893355,36893404,36893355,36893356,50,+,CGCTTTGAAACACAAGTTCGTCTTCATGAAGATGAGCTTCTTCAGTTAGT,"Exon (Golgb1-202/Golgb1, exon 6 of 21)",16,36875168,36933085,57918,1,Golgb1-203,18187,Golgb1-203;Golgb1-204;Golgb1-202,Golgb1;Golgb1;Golgb1,0;18153;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,224139,ENSMUSG00000034243,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14129,cg04161431,0.0000119,0.00000374,3.188482454,0.001576324,gain,ns,0.0000244,0.00000636,3.834433355,0.000152443,pos,ns,0.006231507,0.001863238,3.344449922,0.000925677,pos,ns,3.033540555,-0.0000835,0.0000641,-1.303452188,0.193387629,neg,ns,0.0602861,Hoxd10,Hoxd10_Exon,2,74692459,74692508,74692459,74692460,50,+,CGGGAAAACCCAAGAGTACAATAATAGCCCCGAAGGCAGCTCCACTGTCA,Promoter (<=1kb),2,74691924,74695105,3182,1,Hoxd10-201,535,Hoxd10-201,Hoxd10,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,21,24,15430,ENSMUSG00000050368,conserved gene and region,2,74692453,74693054,602,*,602,35,0.609634552,0.625742457,0.058139535,1.01E-18,CpGisland,TRUE,U13,Hc-P
8784,cg13892288,0.00000744,0.00000814,0.914416974,0.361208467,gain,ns,0.000053,0.0000138,3.831701478,0.000154068,pos,ns,0.00854083,0.004049047,2.109343443,0.035716465,pos,ns,1.447131536,-0.0000224,0.000139246,-0.160537465,0.872562273,neg,ns,0.867799343,Dscaml1,Dscaml1_Exon,9,45744200,45744249,45744200,45744201,50,-,CGCTCCTTCAAGCTGGACAGCCTCAAGTGTGGCACGTGGTACAAGGTGAA,"Exon (Dscaml1-211/Dscaml1, exon 25 of 33)",9,45430291,45753262,322972,1,Dscaml1-211,313909,Dscaml1-211;Dscaml1-201;Dscaml1-210;Dscaml1-207;Dscaml1-204,Dscaml1;Dscaml1;Dscaml1;Dscaml1;Dscaml1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,32,114873,ENSMUSG00000032087,conserved gene and region,9,45744112,45744334,223,*,223,14,0.600896861,0.705536723,0.062780269,2.78E-08,CpGisland,TRUE,NA,NRS
1003,cg05218225,0.0000432,0.0000107,4.047419191,0.0000655,gain,ns,0.0000695,0.0000181,3.831685301,0.000154077,pos,ns,0.023303821,0.00531363,4.385668573,0.0000159,pos,ns,4.799655007,-0.0005645,0.000182735,-3.089169221,0.00218897,neg,ns,0.364834354,Tspan7,Tspan7_Exon,X,10485181,10485230,10485229,10485230,50,+,CAAACCTGTGATAACCTGTCTCAAAACCCTCCTCATCATCTACTCCTTCG,Promoter (<=1kb),20,10485158,10596605,111448,1,Tspan7-201,23,Tspan7-201;Tspan7-202;Tspan7-203,Tspan7;Tspan7;Tspan7,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,21912,ENSMUSG00000058254,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14123,cg02330041,-0.0000133,0.0000141,-0.939368271,0.348273039,loss,ns,0.0000921,0.000024,3.831489251,0.000154195,pos,ns,0.013623714,0.007039205,1.935405206,0.053849809,pos,ns,1.268815834,-0.000223114,0.000242078,-0.921661095,0.357422094,neg,ns,0.339246046,Hoxd10,Hoxd10_Exon,2,74692182,74692231,74692230,74692231,50,-,GTATGAATGTGCATCCTTATATACCTCAAGTAGACAGTTGGACAGATCCG,Promoter (<=1kb),2,74691924,74695105,3182,1,Hoxd10-201,258,Hoxd10-201,Hoxd10,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,21,24,15430,ENSMUSG00000050368,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
5684,cg21421053,0.000124947,0.00000688,18.16898414,9.77E-51,gain,yes,-0.0000448,0.0000117,-3.830690765,0.000154673,neg,ns,-0.002299841,0.003422711,-0.671935485,0.502125221,neg,ns,0.299187964,0.0000878,0.000117707,0.745971344,0.456250009,pos,ns,0.837245224,Mapkap1,Mapkap1_Intron,2,34556812,34556861,34556812,34556813,50,-,CGGTTCAATTTAGTTACGATTTTTTGCCATTAGGCTGGGGCTGAATGATG,"Intron (Mapkap1-204/Mapkap1, intron 6 of 10)",2,34406862,34623475,216614,1,Mapkap1-204,149950,Mapkap1-204;Mapkap1-202;Mapkap1-201;Mapkap1-209;Mapkap1-203,Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,59,227743,ENSMUSG00000038696,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12234,cg06044403,0.000063,0.00000655,9.614417705,2.53E-19,gain,yes,-0.0000426,0.0000111,-3.830334038,0.000154887,neg,ns,-0.006831764,0.003259097,-2.096213922,0.036873647,neg,ns,1.433283908,0.000329318,0.00011208,2.938237035,0.003548504,pos,ns,0.889121663,Ptch1,Ptch1_Intron,13,63554762,63554811,63554810,63554811,50,+,CATATGTATAGCTGCTCGGTGCTAATTATGCTAATCACCTGTCTAACTCG,"Intron (Ptch1-201/Ptch1, intron 2 of 22)",13,63508328,63565735,57408,2,Ptch1-201,10924,Ptch1-201;Ptch1-204;Ptch1-206;Ptch1-202;Ptch1-207;Ptch1-203;Ptch1-205,Ptch1;Ptch1;Ptch1;Ptch1;Ptch1;Ptch1;Ptch1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,36,19206,ENSMUSG00000021466,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23950,cg05267150,-0.0000431,0.000014,-3.084498021,0.002222584,loss,ns,0.0000908,0.0000237,3.8272999,0.00015672,pos,ns,0.008992579,0.006948759,1.294127256,0.196584722,pos,ns,0.706450236,0.0000446,0.000238967,0.186626669,0.852075428,pos,ns,0.718641186,Galnt2l,Galnt2l_Intron,8,121300757,121300806,121300805,121300806,50,+,ACAGCACCCGTTAATTGTCTGGTTAGGTATGACCTATTAAACATTTACCG,"Intron (Galnt2l-201/Galnt2l, intron 1 of 15)",8,119910841,124345722,4434882,1,Galnt2l-201,1389916,Galnt2l-201,Galnt2l,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,28,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19703,cg24376537,0.0000546,0.0000118,4.611840643,0.00000585,gain,ns,0.000077,0.0000201,3.826143742,0.000157424,pos,ns,0.025132389,0.00589378,4.264222278,0.0000267,pos,ns,4.574068279,-0.000531059,0.000202687,-2.620101294,0.009223138,neg,ns,0.394487173,Dlg3,Dlg3_Exon,X,100768075,100768124,100768123,100768124,50,+,CACAAGCACCAGCACTGCTGTAAGTGCCCTGAGTGCTATGAGGTGACCCG,Promoter (<=1kb),20,100767722,100818406,50685,1,Dlg3-201,353,Dlg3-201;Dlg3-204;Dlg3-202;Dlg3-206,Dlg3;Dlg3;Dlg3;Dlg3,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,11,53310,ENSMUSG00000000881,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
14546,cg07308881,0.000076,0.00000965,7.87983345,5.60E-14,gain,yes,-0.0000627,0.0000164,-3.825719823,0.000157683,neg,ns,-0.003130339,0.004801236,-0.651986073,0.514893259,neg,ns,0.288282794,0.000146519,0.000165114,0.887382713,0.375560826,pos,ns,0.808469612,Rbm45,Rbm45_Exon,2,76380366,76380415,76380366,76380367,50,-,CGTTTTGGTAACCTGATCGAAGTTTACCTTGTGTCAGGAAAAAATGTGGG,"Exon (Rbm45-201/Rbm45, exon 9 of 10)",2,76369984,76383768,13785,1,Rbm45-201,10382,Rbm45-201,Rbm45,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,241490,ENSMUSG00000042369,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14201,cg14980293,0.0000168,0.00000301,5.602076125,4.68E-08,gain,yes,-0.0000195,0.00000511,-3.822946563,0.000159387,neg,ns,-0.002478736,0.00149615,-1.656743201,0.098583122,neg,ns,1.006197434,-0.0000354,0.0000515,-0.687803447,0.492090867,neg,ns,0.927806213,Lrch1,Lrch1_Exon,14,74765182,74765231,74765230,74765231,50,+,GTCAACAGTCTTTCGAATGTGACGAAAATCCAACTGCAGGATGTCACACG,"Exon (Lrch1-202/Lrch1, exon 10 of 10)",14,74754675,74947866,193192,2,Lrch1-201,182635,Lrch1-201;Lrch1-204;Lrch1-205;Lrch1-202,Lrch1;Lrch1;Lrch1;Lrch1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,380916,ENSMUSG00000068015,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24774,cg03201458,-0.00000015,0.00000681,-0.022109558,0.982374786,loss,ns,0.0000442,0.0000116,3.820554448,0.00016087,pos,ns,0.001365427,0.003387726,0.403051081,0.687188475,pos,ns,0.162924133,0.000224546,0.000116504,1.927374831,0.054846473,pos,ns,0.030787767,Nabp2,Nabp2_Exon,10,128409272,128409321,128409320,128409321,50,-,GTTCAGATTCTTGAGCCCAGGCTTGATATCCTTCACAAAGGTCTCCGTCG,Promoter (<=1kb),10,128401395,128409728,8334,2,Nabp2-202,407,Ankrd52-202;Nabp2-202;Nabp2-201;Nabp2-204;Nabp2-205;Nabp2-209;Nabp2-203;Nabp2-208;Nabp2-207;Nabp2-206;Rnf41-202;Rnf41-203;Rnf41-201,Ankrd52;Nabp2;Nabp2;Nabp2;Nabp2;Nabp2;Nabp2;Nabp2;Nabp2;Nabp2;Rnf41;Rnf41;Rnf41,0;0;0;0;-429;0;0;-92;0;0;-2336;-2392;-2425,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,69917,ENSMUSG00000025374,conserved gene and region,10,128409289,128409357,69,*,69,8,0.637681159,1.142857143,0.115942029,0.00000069,CpGisland,TRUE,NA,NRS
6643,cg26226228,-0.0000265,0.00000481,-5.521709269,7.11E-08,loss,yes,0.0000312,0.00000817,3.819861638,0.000161302,pos,ns,0.001488304,0.002393042,0.621929646,0.534445256,pos,ns,0.272096774,-0.00001,0.0000823,-0.1221025,0.902896956,neg,ns,0.908806015,Uri1,Uri1_Intergenic_downstream,7,37905622,37905671,37905622,37905623,50,-,CGTAGTTGAATATTGGAAATTGGGAGTACACAGAAATATTCTCAAAAGCT,Distal Intergenic,7,37961301,37962528,1228,2,Uri1-203,56906,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,19,27,19777,ENSMUSG00000030421,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8393,cg00393367,0.00000676,0.00000648,1.04298116,0.297769682,gain,ns,-0.000042,0.000011,-3.819418832,0.000161579,neg,ns,-0.004645792,0.003224065,-1.440973583,0.150601433,neg,ns,0.822170896,0.000258128,0.000110875,2.328093037,0.02055028,pos,ns,0.856509411,Zeb2,Zeb2_Intron,2,45087853,45087902,45087901,45087902,50,-,TACCTGTGAAATCCATGCATACTTCTCCCATTTGCTGCAGTTCCCAGGCG,"Intron (Zeb2-212/Zeb2, intron 3 of 10)",2,44983632,45117395,133764,2,Zeb2-212,29493,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14467,cg14213846,0.00000524,0.00000508,1.032104221,0.302827824,gain,ns,-0.0000329,0.00000862,-3.816700071,0.000163287,neg,ns,-0.002733669,0.002526301,-1.082083706,0.280056332,neg,ns,0.552754604,-0.000156611,0.0000869,-1.802622954,0.07241858,neg,ns,0.885837099,Zc3h3,Zc3h3_Intron,15,75799490,75799539,75799538,75799539,50,+,GGTTTAAATTGAAAACCCCCAACTGAATCAATATTTACTGCATTGAAACG,"Intron (Zc3h3-201/Zc3h3, intron 4 of 11)",15,75754430,75841915,87486,2,Zc3h3-201,42376,Zc3h3-201;Zc3h3-203;Zc3h3-202,Zc3h3;Zc3h3;Zc3h3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,18,223642,ENSMUSG00000075600,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3224,cg20665157.1,0.000414938,0.0000154,26.88329567,5.34E-83,gain,yes,-0.000100065,0.0000262,-3.816108986,0.000163661,neg,ns,0.036227254,0.007682045,4.715834668,0.00000364,pos,ns,5.438339803,-0.000326862,0.000264185,-1.237246358,0.216932007,neg,ns,0.271216923,Cadps2,Cadps2_Intron,6,23273232,23273281,23273280,23273281,50,-,TGTCAATAGAAATTGACAAACCTCATCTCCTAAATAGTGCAGCTGAGCCG,"Intron (Cadps2-213/Cadps2, intron 28 of 29)",6,23262773,23839137,576365,2,Cadps2-213,565856,Cadps2-213;Cadps2-205;Cadps2-212;Cadps2-201;Cadps2-209;Cadps2-206;Cadps2-211;Cadps2-207;Cadps2-202;Cadps2-210,Cadps2;Cadps2;Cadps2;Cadps2;Cadps2;Cadps2;Cadps2;Cadps2;Cadps2;Cadps2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,15,320405,ENSMUSG00000017978,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24256,cg03100301,0.0000119,0.0000118,1.012828571,0.311931907,gain,ns,0.0000765,0.00002,3.815973958,0.000163747,pos,ns,0.009152203,0.005870242,1.559084594,0.119996634,pos,ns,0.920830934,-0.000194594,0.000201877,-0.963922414,0.335836141,neg,ns,0.611690113,Pou3f1,Pou3f1_Intergenic_upstream,4,124375565,124375614,124375613,124375614,50,-,CCCTTGATAACTGAAGTCAGGAGCGAGGGCCTGTCTGTCAATCTCTGACG,Distal Intergenic,4,124656807,124660655,3849,1,Pou3f1-201,-281242,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,24,85,18991,ENSMUSG00000090125,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23610,cg20012467,0.0000922,0.0000133,6.933502038,2.39E-11,gain,yes,0.0000862,0.0000226,3.814281407,0.000164822,pos,ns,0.018559671,0.00661906,2.80397384,0.005366097,pos,ns,2.270341501,-0.000408794,0.000227629,-1.795880464,0.073487214,neg,ns,0.14693634,Dll4,Dll4_Promoter,2,119322243,119322292,119322291,119322292,50,+,AGGCGGGCGGGAAGCTGCTGCATTAAATTGTAAAATCGATTTATTGACCG,Promoter (3-4kb),2,119325784,119335962,10179,1,Dll4-201,-3492,Dll4-201,Dll4,0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,8,20,54485,ENSMUSG00000027314,conserved gene and region,2,119322082,119322448,367,*,367,37,0.632152589,1.026301867,0.100817439,1.47E-28,CpGisland,TRUE,U3,Pr-B
17990,cg00653777,0.0000356,0.0000123,2.8953255,0.004056682,gain,ns,0.0000798,0.0000209,3.813488119,0.000165328,pos,ns,0.019176822,0.006127516,3.12962392,0.001916855,pos,ns,2.717410732,-0.000438971,0.000210725,-2.083150397,0.038056708,neg,ns,0.30064404,Arx,Arx_Promoter,X,93282787,93282836,93282835,93282836,50,+,GTATTGTTGTTTTCTCTCTCTCTTTCTCTCCTCCTAACACTGCAATAACG,Promoter (3-4kb),20,93286445,93288382,1938,1,Arx-203,-3609,Arx-203;Arx-201;Arx-202,Arx;Arx;Arx,-3609;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,7,32,11878,ENSMUSG00000035277,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
16649,cg02829706,0.000096,0.0000164,5.861484278,1.17E-08,gain,yes,-0.000106106,0.0000278,-3.81274869,0.000165801,neg,ns,-0.011279203,0.008153055,-1.383432753,0.16752764,neg,ns,0.775913529,-0.001148989,0.000280383,-4.097929415,0.0000533,neg,ns,0.447634255,Tbx2,Tbx2_fiveUTR,11,85832597,85832646,85832645,85832646,50,+,TGGTTAATATTTTATTCTGTTGACATGTTTTCTTACTGCTGAGGCTTCCG,Promoter (<=1kb),11,85832551,85841948,9398,1,Tbx2-201,46,Tbx2-201,Tbx2,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,12,14,21385,ENSMUSG00000000093,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
5121,cg07664972.1,0.0000148,0.0000227,0.652241258,0.514728871,gain,ns,-0.000146915,0.0000385,-3.812483723,0.000165971,neg,ns,0.043369139,0.011289546,3.841531011,0.000148296,pos,ns,3.828871111,-0.003432307,0.000388247,-8.840534127,7.31E-17,neg,yes,0.677375989,Wiz,Wiz_threeUTR,17,32381069,32381118,32381117,32381118,50,-,CAGCATGGCACTCACCAGCTGCTGATCCGATGGGTGGCGGAGGTGACACG,3' UTR,17,32354055,32388644,34590,2,Wiz-210,7526,Wiz-210;Wiz-203;Wiz-204;Wiz-201;Wiz-213;Wiz-205;Wiz-212;Wiz-206;Wiz-211;Wiz-202;Wiz-214,Wiz;Wiz;Wiz;Wiz;Wiz;Wiz;Wiz;Wiz;Wiz;Wiz;Wiz,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,4,22404,ENSMUSG00000024050,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4536,cg03121615,-0.0000152,0.00000928,-1.637723236,0.102494047,loss,ns,0.0000601,0.0000158,3.811513786,0.000166595,pos,ns,0.003792018,0.004616357,0.821430966,0.412032105,pos,ns,0.385068943,0.0000832,0.000158756,0.523910697,0.60071501,pos,ns,0.720387971,Mnx1,Mnx1_Intergenic_upstream,5,29497246,29497295,29497294,29497295,50,+,CCCTAGATAATAAATACGAGACACAGCACACACTGCTTTTAATTGCATCG,Distal Intergenic,5,29473261,29478470,5210,2,Mnx1-201,-18776,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,8,15285,ENSMUSG00000001566,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27569,cg09473797,0.0000347,0.0000337,1.030675762,0.303496346,gain,ns,0.000218243,0.0000573,3.811499583,0.000166604,pos,ns,0.031415661,0.016774983,1.872768581,0.062041399,pos,ns,1.207318417,-0.000195364,0.00057689,-0.338649524,0.735103028,neg,ns,0.574436729,Tshz2,Tshz2_Intron,2,169962209,169962258,169962209,169962210,50,-,CGCTGCGATGATTTTGACAGAACTCACTTTCCATGTCTAATTTGATGCTA,"Intron (Tshz2-203/Tshz2, intron 1 of 1)",2,169884893,170071816,186924,1,Tshz2-203,77316,Tshz2-203;Tshz2-205,Tshz2;Tshz2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,21,30,228911,ENSMUSG00000047907,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18126,cg10536349,0.0000303,0.00000748,4.04318657,0.0000666,gain,ns,-0.0000485,0.0000127,-3.811478432,0.000166617,neg,ns,0.006539775,0.003724795,1.755740753,0.080120268,pos,ns,1.096257606,-0.000167408,0.000128095,-1.306897924,0.192216005,neg,ns,0.876781849,Spag9,Spag9_fiveUTR,11,94044361,94044410,94044409,94044410,50,-,CGCCATGAGTCCTGGATGCATGCTGCTGTTTGTGTTTGGCTTTGTTGGCG,Promoter (<=1kb),11,94044365,94126083,81719,1,Spag9-201,0,Spag9-209;Spag9-208;Spag9-202;Spag9-212;Spag9-207;Spag9-206;Spag9-203;Spag9-204;Spag9-205;Spag9-201,Spag9;Spag9;Spag9;Spag9;Spag9;Spag9;Spag9;Spag9;Spag9;Spag9,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,6,70834,ENSMUSG00000020859,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
25433,cg09075048,0.0000316,0.00000897,3.522530032,0.000491727,gain,ns,0.0000581,0.0000152,3.810211265,0.000167435,pos,ns,0.015785391,0.004465264,3.53515291,0.000469695,pos,ns,3.328184,-0.000211981,0.00015356,-1.380440965,0.168445471,neg,ns,0.42588326,Gm5904,Gm5904_Intergenic_upstream,7,136491628,136491677,136491676,136491677,50,-,CTAAAGAGCTAGATATCCCCACTATGGAAAGATTAACAGCGCTAAATCCG,Distal Intergenic,7,136657209,136658073,865,1,Gm5904-201,-165581,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,14,17,546009,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6971,cg09313780,0.0000057,0.0000204,0.279698843,0.779895095,gain,ns,0.00013194,0.0000346,3.80938211,0.000167972,pos,ns,0.016383266,0.01014705,1.614584192,0.107418103,pos,ns,0.96892252,-0.0000495,0.000348956,-0.141793238,0.887335429,neg,ns,0.571798447,Kctd16,Kctd16_Exon,18,40258607,40258656,40258607,40258608,50,-,CGTTATATTCTGGACTATCTCAGGGACAGGCAGGTGGTCCTGCCTGATCA,"Exon (Kctd16-206/Kctd16, exon 2 of 3)",18,40257023,40531630,274608,1,Kctd16-206,1584,Kctd16-202;Kctd16-206;Kctd16-201;Kctd16-203,Kctd16;Kctd16;Kctd16;Kctd16,1645;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,383348,ENSMUSG00000051401,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26274,cg13470958,0.0000386,0.0000137,2.818038468,0.005142258,gain,ns,0.0000887,0.0000233,3.809136102,0.000168132,pos,ns,0.025177902,0.006820083,3.691729468,0.000263101,pos,ns,3.579878262,-0.000648889,0.000234542,-2.766621018,0.006004127,neg,ns,0.527349659,Cfap61,Cfap61_Exon,2,146045476,146045525,146045476,146045477,50,-,CGACGACAGATTGTCTATCCTCTGGAAAAGCTTGGCATAAACGCTCCATC,"Exon (Cfap61-206/Cfap61, exon 17 of 27)",2,145934814,146215039,280226,1,Cfap61-206,110662,Cfap61-204;Cfap61-206;Cfap61-213;Cfap61-211;Cfap61-203;Cfap61-209,Cfap61;Cfap61;Cfap61;Cfap61;Cfap61;Cfap61,0;0;0;0;0;-1726,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,13,78774,ENSMUSG00000037143,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2637,cg26102159,-0.000231867,0.0000156,-14.87471503,3.83E-38,loss,yes,-0.000100866,0.0000265,-3.808871659,0.000168304,neg,ns,0.043380592,0.007758301,5.591506802,4.94E-08,pos,ns,7.306074834,-0.001983418,0.000266807,-7.433897706,1.04E-12,neg,yes,0.844089439,Camk2g,Camk2g_Exon,14,20757711,20757760,20757711,20757712,50,-,CGGAGCTCTGCCTGCCAACTGAGGGGATACAGTCTCTCAGTGCACAGAGC,"Exon (Camk2g-209/Camk2g, exon 4 of 11)",14,20734875,20794051,59177,2,Camk2g-203,36291,Camk2g-203;Camk2g-201;Camk2g-202;Camk2g-217;Camk2g-209;Camk2g-204;Camk2g-212;Camk2g-211;Camk2g-214;Camk2g-216;Camk2g-206,Camk2g;Camk2g;Camk2g;Camk2g;Camk2g;Camk2g;Camk2g;Camk2g;Camk2g;Camk2g;Camk2g,0;0;0;0;0;0;0;0;0;0;7749,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,15,12325,ENSMUSG00000021820,conserved gene and region,14,20757639,20757712,74,*,74,11,0.783783784,0.986666667,0.148648649,1.07E-10,CpGisland,TRUE,NA,NRS
12178,cg00211423,-0.0000254,0.0000156,-1.631399764,0.103821432,loss,ns,0.000100636,0.0000264,3.807633114,0.00016911,pos,ns,0.023729281,0.007743134,3.064557632,0.002371485,pos,ns,2.624979552,-0.000516854,0.000266286,-1.940976054,0.053167363,neg,ns,0.825990179,Map2k5,Map2k5_Intron,9,63230124,63230173,63230124,63230125,50,-,CGCTGGCGGTTGTATAAACATCAGATCAAGTCTGATGTCTTCAAGGATTT,"Intron (Map2k5-201/Map2k5, intron 17 of 21)",9,63163768,63377902,214135,2,Map2k5-201,147729,Map2k5-201;Map2k5-202,Map2k5;Map2k5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,34,37,23938,ENSMUSG00000058444,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1075,cg01515407,0.000013,0.0000161,0.807004863,0.4202824,gain,ns,0.000104235,0.0000274,3.805100316,0.000170772,pos,ns,0.026838463,0.008025333,3.344217872,0.000926424,pos,ns,3.033190036,-0.000680075,0.000275991,-2.464124992,0.014277225,neg,ns,0.402382496,Gm14515,Gm14515_Intergenic_upstream,X,11494205,11494254,11494253,11494254,50,-,TGAGGCCCAGATGGTCAGGGAAGCCCTTTCCCGCCTCACAAAGAGGATCG,Distal Intergenic,20,11601354,11601569,216,1,Gm14515-201,-107149,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,21,28,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18551,cg23119788,0.000100861,0.0000134,7.531792602,5.52E-13,gain,yes,-0.0000865,0.0000228,-3.803731432,0.000171676,neg,ns,-0.027643543,0.006665034,-4.147546867,0.0000434,neg,ns,4.36213849,0.001091452,0.00022921,4.761799321,0.00000295,pos,ns,0.459346829,Hoxb8,Hoxb8_threeUTR,11,96285239,96285288,96285287,96285288,50,-,TTTTGTTGTTCCTCTATACTTTGTTCTGTTGTCTGCGCCTGAAAAGGGCG,3' UTR,11,96281905,96285315,3411,1,Hoxb8-201,3334,Hoxb7-201;Hoxb7-202;Hoxb8-201;Hoxb8-202;Hoxb8-203,Hoxb7;Hoxb7;Hoxb8;Hoxb8;Hoxb8,0;-3427;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,26,15416,ENSMUSG00000056648,mapped to different genes,11,96285274,96285363,90,*,90,9,0.588888889,1.153846154,0.1,0.00000037,CpGisland,TRUE,U13,Hc-P
2966,cg22975794,-0.00000391,0.00000214,-1.823202517,0.069235683,loss,ns,0.0000138,0.00000364,3.799779408,0.000174312,pos,ns,0.003157308,0.001067222,2.958435935,0.003330054,pos,ns,2.477548784,0.00000289,0.0000367,0.078704936,0.937318098,pos,ns,0.952752148,Lrmda,Lrmda_Intron,14,22192316,22192365,22192364,22192365,50,-,TCTTGGTGGCATCTGATGTTGATTGGCTTTGTCCTGCGCGGCTGCGCTCG,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,172604,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206,Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,14,22192352,22192427,76,*,76,8,0.565789474,1.375565611,0.105263158,0.00000148,CpGisland,TRUE,U11,Tr-P
25780,cg14737427,0.0000341,0.00000338,10.08330488,7.26E-21,gain,yes,-0.0000218,0.00000575,-3.799520652,0.000174486,neg,ns,0.002370454,0.001683941,1.407682153,0.160227148,pos,ns,0.795263899,-0.000101314,0.0000579,-1.7494854,0.081196694,neg,ns,0.089365112,Uncx,Uncx_Promoter,5,139540709,139540758,139540757,139540758,50,-,TGCGTCTTATTATCAAGTTAATTAAAGCTAGCATCTGACAATGTCACTCG,Promoter (2-3kb),5,139543494,139548179,4686,1,Uncx-201,-2785,Uncx-201;Uncx-202,Uncx;Uncx,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,22,88,22255,ENSMUSG00000029546,conserved gene and region,5,139540757,139540917,161,*,161,14,0.658385093,0.845778612,0.086956522,3.80E-10,CpGisland,TRUE,U13,Hc-P
8384,cg13096896,0.0000253,0.0000077,3.279321937,0.001158968,gain,ns,-0.0000497,0.0000131,-3.798892171,0.000174909,neg,ns,-0.000685241,0.003834471,-0.178705362,0.858285792,neg,ns,0.066368077,0.0000724,0.000131867,0.549142892,0.583302719,pos,ns,0.809971457,Zeb2,Zeb2_Intron,2,45073272,45073321,45073272,45073273,50,-,CGACTGACTGGCACCAGACACAATCATCCTCTTGATTCAGCAAATTGTCC,"Intron (Zeb2-212/Zeb2, intron 3 of 10)",2,44983632,45117395,133764,2,Zeb2-212,44074,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6816,cg10096350,0.0000295,0.00000446,6.615164066,1.63E-10,gain,yes,-0.0000288,0.00000758,-3.797922946,0.000175564,neg,ns,0.003532486,0.002221687,1.590001402,0.112853756,pos,ns,0.947483982,-0.0001048,0.0000764,-1.371666601,0.171159169,neg,ns,0.846311068,Psmb7,Psmb7_Intron,2,38595001,38595050,38595049,38595050,50,+,TGACAAGCAGCACTTTATAGAGCTATCTGTTTGTCTCCATCACCGCATCG,"Intron (Psmb7-201/Psmb7, intron 6 of 7)",2,38588036,38644087,56052,2,Psmb7-201,49037,Nek6-201;Psmb7-201,Nek6;Psmb7,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,9,19177,ENSMUSG00000026750,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
125,cg03139948,-0.0000018,0.00000861,-0.209079317,0.834523641,loss,ns,-0.0000556,0.0000146,-3.797716764,0.000175703,neg,ns,0.004980755,0.004286041,1.16208757,0.246093789,pos,ns,0.608899346,-0.000504666,0.000147397,-3.423861737,0.000700423,neg,ns,0.587635087,Kdm2a,Kdm2a_threeUTR,19,4320930,4320979,4320930,4320931,50,+,CGAATTTGAGGGTCCTTGATTCCTACTGCCCACCGAAGATCAAGGGTCCT,3' UTR,19,4314419,4398285,83867,2,Kdm2a-201,77306,Kdm2a-201;Kdm2a-202;Kdm2a-213;Kdm2a-211;Kdm2a-207;Kdm2a-214;Kdm2a-212,Kdm2a;Kdm2a;Kdm2a;Kdm2a;Kdm2a;Kdm2a;Kdm2a,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,30,225876,ENSMUSG00000054611,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9414,cg15005306,0.000109715,0.000011,9.966160889,1.78E-20,gain,yes,-0.000071,0.0000187,-3.795476877,0.000177226,neg,ns,0.015124845,0.005479175,2.760423995,0.006116387,pos,ns,2.213505058,-0.000335123,0.000188428,-1.778516167,0.076299093,neg,ns,0.46578532,Zbtb16,Zbtb16_Intron,9,48675484,48675533,48675484,48675485,50,-,CGGAACAAATGTGCCCTGGCACCACGGGGGCCCCCATTTGTGAAACTAAT,"Intron (Zbtb16-201/Zbtb16, intron 4 of 6)",9,48654297,48835945,181649,2,Zbtb16-201,160412,Zbtb16-201;Zbtb16-202,Zbtb16;Zbtb16,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,37,235320,ENSMUSG00000066687,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24490,cg17512976,0.0000306,0.0000221,1.384425919,0.16722379,gain,ns,0.000142398,0.0000375,3.795173421,0.000177433,pos,ns,-0.002264422,0.010992323,-0.206000301,0.836925896,neg,ns,0.077312994,0.000369139,0.000378025,0.976494232,0.329580994,pos,ns,0.645114768,Kcna1,Kcna1_Exon,6,126641977,126642026,126642025,126642026,50,-,TCCTCTTCGATCTCCATGTACTCAGACTTGCTCATAGTAGAGGAACTGCG,"Exon (Kcna1-201/Kcna1, exon 2 of 2)",6,126640397,126644796,4400,2,Kcna1-201,2770,Kcna1-201;Kcna1-202;Kcna1-203,Kcna1;Kcna1;Kcna1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,12,16485,ENSMUSG00000047976,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
14397,cg20402664,-0.00000227,0.000017,-0.133330054,0.894018869,loss,ns,0.000109661,0.0000289,3.795027757,0.000177532,pos,ns,0.016588412,0.008465551,1.959519506,0.050947823,pos,ns,1.292874372,-0.0000628,0.00029113,-0.215643061,0.8294078,neg,ns,0.433409569,Asic4,Asic4_Exon,1,75451218,75451267,75451218,75451219,50,+,CGATGCCGACATCTTCCACCTGGCCAATCTGACAGGGCTGCCCCCCAAAG,Promoter (<=1kb),1,75450436,75474340,23905,1,Asic4-202,782,Asic4-202;Asic4-201,Asic4;Asic4,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,11,241118,ENSMUSG00000033007,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
11416,cg06362153,-0.000111166,0.00000834,-13.33205511,2.31E-32,loss,yes,-0.0000537,0.0000142,-3.793817484,0.000178362,neg,ns,0.027021638,0.004150048,6.511162971,3.00E-10,pos,ns,9.522472575,-0.001125233,0.00014272,-7.88420877,5.44E-14,neg,yes,0.829804242,Larp1,Larp1_Exon,11,58057314,58057363,58057362,58057363,50,+,AAAAATTTGGACATTGACCCCAAACTGCAAGAATACCTCGGCAAATTCCG,"Exon (Larp1-201/Larp1, exon 18 of 19)",11,58009064,58062031,52968,1,Larp1-201,48250,Larp1-201;Larp1-203,Larp1;Larp1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,6,73158,ENSMUSG00000037331,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24871,cg16569295,-0.00000691,0.0000167,-0.413652886,0.679414354,loss,ns,0.000107566,0.0000284,3.792123901,0.000179528,pos,ns,0.027800775,0.008310163,3.345394516,0.00092264,pos,ns,3.034967601,-0.000756154,0.000285786,-2.645876815,0.008563587,neg,ns,0.6243469,Hpca,Hpca_Exon,4,129112682,129112731,129112730,129112731,50,+,GTTTGTGTCCATTTGGCGGAAGATTTTCTCAGTCCTCTTTTCCGGGGTCG,"Exon (Hpca-202/Hpca, exon 2 of 3)",4,129111570,129118967,7398,2,Hpca-202,6236,Hpca-202;Hpca-204;Hpca-201;Hpca-209;Hpca-203;Hpca-207;Hpca-205;Hpca-208;Tmem54-203;Tmem54-201;Tmem54-202;Tmem54-204,Hpca;Hpca;Hpca;Hpca;Hpca;Hpca;Hpca;Hpca;Tmem54;Tmem54;Tmem54;Tmem54,0;0;0;0;0;0;0;0;7134;7108;7081;5813,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,15444,ENSMUSG00000028785,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2538,cg20938109,0.0000892,0.00000815,10.94663509,8.51E-24,gain,yes,-0.0000525,0.0000138,-3.791479742,0.000179974,neg,ns,0.008388214,0.004055814,2.068194886,0.039450788,pos,ns,1.403944314,-0.000311812,0.000139479,-2.235543994,0.026093376,neg,ns,0.838609285,Abcc5,Abcc5_threeUTR,16,20402272,20402321,20402272,20402273,50,-,CGAGAGATTCTGCCCAGCTTGACTCTCTCATTCTGACCGCAGAATACAGC,3' UTR,16,20331303,20426394,95092,2,Abcc5-202,24073,Abcc5-202;Abcc5-204;Abcc5-213;Abcc5-201;Abcc5-206;Abcc5-208;Abcc5-203;Abcc5-212,Abcc5;Abcc5;Abcc5;Abcc5;Abcc5;Abcc5;Abcc5;Abcc5,0;0;0;0;-1986;0;0;24032,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,6,27416,ENSMUSG00000022822,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4456,cg12545961,0.00000608,0.0000165,0.369477858,0.712023831,gain,ns,0.000105981,0.000028,3.791030626,0.000180285,pos,ns,0.017874665,0.008190102,2.182471686,0.029824988,pos,ns,1.525419718,0.000648175,0.000281657,2.301294343,0.02203808,pos,ns,0.209334454,Sox4,Sox4_threeUTR,13,28949479,28949528,28949479,28949480,50,-,CGCGAACTCAAATCGGCATTTAGATAGATCCAGTGGTTTAAACGGCACGT,3' UTR,13,28948919,28953713,4795,2,Sox4-201,4185,Sox4-201,Sox4,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,8,12,20677,ENSMUSG00000076431,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8146,cg02863109,-0.0000552,0.0000118,-4.67063174,0.00000448,loss,ns,0.0000761,0.0000201,3.790976499,0.000180322,pos,ns,0.000694435,0.005883368,0.118033568,0.906117502,pos,ns,0.042815481,0.0000641,0.000202329,0.316671051,0.751706357,pos,ns,0.685408583,Pax2,Pax2_Intron,19,44797672,44797721,44797720,44797721,50,+,GACCAGCCGTGGTGTCACCGTGTGAGGTGACATTTGAATTTACAATTCCG,"Intron (Pax2-203/Pax2, intron 5 of 9)",19,44756045,44837851,81807,1,Pax2-203,41627,Pax2-203;Pax2-201;Pax2-202,Pax2;Pax2;Pax2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,35,166,18504,ENSMUSG00000004231,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
193,cg15560305,0.000124392,0.0000192,6.49347997,3.33E-10,gain,yes,-0.000123356,0.0000325,-3.7904046,0.00018072,neg,ns,0.059503747,0.009534349,6.240986756,1.43E-09,pos,ns,8.845632074,-0.001622866,0.000327885,-4.949489472,0.00000122,neg,yes,0.515716178,Ascc2,Ascc2_Exon,11,4646615,4646664,4646663,4646664,50,+,AGACAACATTCCCGCCCTAGTGGAGGAGTACCTGGAACGCGCCACCTTCG,"Exon (Ascc2-201/Ascc2, exon 3 of 20)",11,4637747,4683385,45639,1,Ascc2-201,8868,Ascc2-201;Ascc2-202,Ascc2;Ascc2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,9,75452,ENSMUSG00000020412,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9479,cg07848539,-0.0000497,0.0000203,-2.442145856,0.015158732,loss,ns,0.000130813,0.0000346,3.785113832,0.000184433,pos,ns,-0.01504958,0.010124854,-1.486399678,0.138189741,neg,ns,0.859524196,0.001107482,0.000348193,3.180657121,0.001618124,pos,ns,0.751117899,Gm49155,Gm49155_Intron,14,48853452,48853501,48853452,48853453,50,-,CGCTAATTATACATCCTGAAAAGAATTTGGTTCAGTGTAAGATGATCCTA,"Intron (Otx2os1-206/Otx2os1-206, intron 2 of 4)",14,48867329,48867800,472,2,Gm49155-201,14348,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,4,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19877,cg15281901,-0.00000324,0.00000754,-0.430198292,0.667350313,loss,ns,0.0000485,0.0000128,3.784149349,0.000185118,pos,ns,0.012250993,0.00375285,3.264450352,0.001219395,pos,ns,2.913855412,-0.000401124,0.00012906,-3.108035592,0.00205792,neg,ns,0.592214787,Zmym3,Zmym3_Promoter,X,101419567,101419616,101419615,101419616,50,+,TTGCCCACCCCCAACCTCAGGCATTTACAGGAAGACATTTTGGAGCTACG,Promoter (<=1kb),20,101404384,101419798,15415,2,Zmym3-203,182,Zmym3-203;Zmym3-209;Zmym3-206;Zmym3-201;Zmym3-212;Zmym3-214;Zmym3-210;Zmym3-215;Zmym3-207;Zmym3-202;Zmym3-208;Zmym3-204;Zmym3-205;Zmym3-211;Zmym3-217;Zmym3-216;Zmym3-213,Zmym3;Zmym3;Zmym3;Zmym3;Zmym3;Zmym3;Zmym3;Zmym3;Zmym3;Zmym3;Zmym3;Zmym3;Zmym3;Zmym3;Zmym3;Zmym3;Zmym3,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,1,7,56364,ENSMUSG00000031310,conserved gene and region,X,101419615,101420088,474,*,474,40,0.681434599,0.729455217,0.084388186,1.33E-27,CpGisland,TRUE,U1,Pr-A
19259,cg00258173,0.00000691,0.00000413,1.670793153,0.095771753,gain,ns,-0.0000266,0.00000702,-3.784137302,0.000185126,neg,ns,0.007106723,0.002057318,3.454363302,0.000628407,pos,ns,3.201758757,-0.000336992,0.0000708,-4.763070792,0.00000293,neg,ns,0.876541076,Kmt2d,Kmt2d_Exon,15,98853656,98853705,98853656,98853657,50,+,CGGGCTATGTCGCCCACCTTGGTCTGCTTGTTGATCTGGCTCTCAGCCTG,"Exon (Kmt2d-202/Kmt2d, exon 32 of 55)",15,98831669,98871183,39515,2,Kmt2d-202,17478,Kmt2d-202;Kmt2d-201;Kmt2d-205;Kmt2d-203,Kmt2d;Kmt2d;Kmt2d;Kmt2d,0;0;-4419;2604,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,16,381022,ENSMUSG00000048154,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27350,cg02055942,0.0000274,0.0000109,2.521109117,0.012199882,gain,ns,0.0000697,0.0000184,3.783345896,0.00018569,pos,ns,0.009136282,0.005400298,1.691810784,0.091686941,pos,ns,1.037692516,-0.0000364,0.000185716,-0.19585289,0.844853629,neg,ns,0.849898446,Cdh22,Cdh22_Intron,2,165192258,165192307,165192258,165192259,50,+,CGCGCCCTGTCAGAACTCACTGCAGCCCAGTGATCAGGACAAATTGAATA,"Intron (Cdh22-201/Cdh22, intron 1 of 11)",2,165111507,165234853,123347,2,Cdh22-201,42546,Cdh22-201,Cdh22,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,23,104010,ENSMUSG00000053166,conserved gene and region,2,165191991,165192372,382,*,382,21,0.602094241,0.6112,0.054973822,4.81E-11,CpGisland,TRUE,U11,Tr-P
11321,cg20948518,0.0000069,0.00000915,0.754599394,0.451062242,gain,ns,0.0000588,0.0000155,3.783266652,0.000185747,pos,ns,0.015767974,0.004552257,3.463770394,0.000607633,pos,ns,3.216358675,-0.000182984,0.000156552,-1.168842215,0.243365222,neg,ns,0.270347011,Gm13532,Gm13532_Intergenic_downstream,2,57598191,57598240,57598191,57598192,50,+,CGGTTTTACCCACAGCAAATATAGCTGACAAAATCAGCCAGGGGGCACAA,Distal Intergenic,2,57628989,57629228,240,2,Gm13532-201,30988,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,6,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26283,cg01178999,0.00000339,0.00000468,0.725111824,0.46893041,gain,ns,-0.0000301,0.00000795,-3.782558854,0.000186252,neg,ns,0.00569628,0.002330125,2.444624781,0.015056957,pos,ns,1.822262791,-0.000487342,0.0000801,-6.08168554,3.50E-09,neg,yes,0.893878255,Ralgapa2,Ralgapa2_Intron,2,146262392,146262441,146262392,146262393,50,-,CGAACAGGCACTCTGACACTAAGCTGGCACGTGCTGGCCCAGCAGGGGCT,"Intron (A930019D19Rik-201/A930019D19Rik-201, intron 2 of 3)",2,146239879,146512004,272126,2,Ralgapa2-202,249563,Ralgapa2-202;Ralgapa2-211;Ralgapa2-210;Ralgapa2-203;Ralgapa2-205;Ralgapa2-208,Ralgapa2;Ralgapa2;Ralgapa2;Ralgapa2;Ralgapa2;Ralgapa2,0;0;0;-1017;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,26,241694,ENSMUSG00000037110,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17419,cg11367480,0.0000251,0.00000681,3.689624807,0.000265194,gain,ns,0.0000437,0.0000116,3.781719361,0.000186854,pos,ns,0.0072244,0.003389121,2.131644419,0.033822248,pos,ns,1.470797534,-0.000018,0.000116552,-0.154583792,0.877250042,neg,ns,0.879669817,Nrxn3,Nrxn3_Exon,12,90199158,90199207,90199206,90199207,50,+,AATGAACGCTTCCAAATGGTAAAACAGAAAATCCCCTTCAAATATAATCG,"Exon (Nrxn3-208/Nrxn3, exon 17 of 21)",12,88722986,90332878,1609893,1,Nrxn3-213,1476172,Nrxn3-213;Nrxn3-208;Nrxn3-205;Nrxn3-201;Nrxn3-210;Nrxn3-214;Nrxn3-203;Nrxn3-202,Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,39,18191,ENSMUSG00000066392,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13467,cg10156179,0.0000428,0.00000755,5.668135371,0.000000033,gain,yes,-0.0000485,0.0000128,-3.781635027,0.000186914,neg,ns,-0.004978094,0.003759805,-1.32402958,0.186468652,neg,ns,0.729394168,-0.000102011,0.000129299,-0.788952214,0.430742891,neg,ns,0.747852149,Xpo7,Xpo7_Exon,14,70682353,70682402,70682353,70682354,50,+,CGCCCAAGTGCTGTGTAGAAGGTAGTCCGACACCGCATGTCTGTCAGGTT,"Exon (Xpo7-202/Xpo7, exon 18 of 28)",14,70654246,70766628,112383,2,Xpo7-202,84226,Xpo7-202;Xpo7-201;Xpo7-206;Xpo7-203;Xpo7-204;Xpo7-205,Xpo7;Xpo7;Xpo7;Xpo7;Xpo7;Xpo7,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,13,65246,ENSMUSG00000022100,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21082,cg11137360,-0.00000212,0.00000682,-0.311323024,0.755764317,loss,ns,0.0000438,0.0000116,3.781364891,0.000187108,pos,ns,0.014003121,0.003392984,4.127081395,0.0000473,pos,ns,4.325452023,-0.000351035,0.000116684,-3.008414246,0.002841398,neg,ns,0.871222679,Gm42915,Gm42915_Intergenic_upstream,5,106385441,106385490,106385441,106385442,50,+,CGCACCATCTGCTGTGAGACAATCACATTTGTATGCCTCTCAGAATAATC,Distal Intergenic,5,106355362,106355684,323,2,Gm42915-201,-29757,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,4,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2078,cg24356617,-0.000000614,0.00000361,-0.170273906,0.864905803,loss,ns,0.0000232,0.00000613,3.78040299,0.0001878,pos,ns,0.00523748,0.001795306,2.917319156,0.003788471,pos,ns,2.421536045,-0.000140299,0.0000617,-2.272406062,0.02374653,neg,ns,0.925211384,Mmp16,Mmp16_Exon,4,17987555,17987604,17987603,17987604,50,-,TGTACTTGTTATTGCAGGTTTGGTTACAAAAGTACGGCTACCTTCCACCG,"Exon (Mmp16-206/Mmp16, exon 3 of 12)",4,17852893,18117457,264565,1,Mmp16-206,134662,Mmp16-206;Mmp16-204;Mmp16-201;Mmp16-202;Mmp16-205,Mmp16;Mmp16;Mmp16;Mmp16;Mmp16,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,6,17389,ENSMUSG00000028226,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27293,cg01851212,0.000133213,0.00000672,19.82710793,4.50E-57,gain,yes,-0.0000431,0.0000114,-3.779869897,0.000188185,neg,ns,0.002681841,0.003343992,0.801987714,0.423174408,pos,ns,0.373480605,0.000273852,0.000115,2.381333409,0.017853542,pos,ns,0.179442224,Prrx1,Prrx1_fiveUTR,1,163313167,163313216,163313215,163313216,50,-,CACCAACAGAAGAAGGCTTGTTCCAGCTTTAAAACATCTTCAAGAAAACG,Promoter (<=1kb),1,163245119,163313672,68554,2,Prrx1-202,456,Prrx1-202;Prrx1-201;Prrx1-204;Prrx1-203,Prrx1;Prrx1;Prrx1;Prrx1,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,11,18933,ENSMUSG00000026586,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
22089,cg26906954,-0.0000151,0.0000134,-1.120983447,0.263162534,loss,ns,0.0000863,0.0000228,3.779384322,0.000188536,pos,ns,-0.0000845,0.006692908,-0.012632347,0.989929239,neg,ns,0.004395848,0.0000496,0.000230169,0.21537972,0.829612912,pos,ns,0.589256347,Pou3f4,Pou3f4_Promoter,X,110811206,110811255,110811206,110811207,50,+,CGTCTATTGAATGTGGCTCTTTTATTTTGCATGGGGCAGGGGATTTGTGA,Promoter (3-4kb),20,110814280,110817207,2928,1,Pou3f4-201,-3025,Pou3f4-201,Pou3f4,0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,2,7,18994,ENSMUSG00000056854,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26361,cg09285821,0.000019,0.00000396,4.796992861,0.00000251,gain,ns,-0.0000254,0.00000673,-3.779119071,0.000188728,neg,ns,-0.000388297,0.001972661,-0.196839483,0.84408214,neg,ns,0.073615289,0.00000662,0.0000678,0.097522975,0.922374112,pos,ns,0.935716845,Xrn2,Xrn2_Exon,2,147029743,147029792,147029743,147029744,50,+,CGTTTGGTTAACATATACAAAAATGTGGTACACAAAACTGGGGTAAGTTC,"Exon (Xrn2-201/Xrn2, exon 12 of 30)",2,147012996,147078000,65005,1,Xrn2-201,16747,Xrn2-201;Xrn2-204,Xrn2;Xrn2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,24128,ENSMUSG00000027433,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23929,cg21181232,0.000000226,0.00000491,0.046020528,0.96332352,gain,ns,-0.0000315,0.00000834,-3.778231351,0.000189372,neg,ns,-0.008172283,0.002444661,-3.342911041,0.000930644,neg,ns,3.031216383,0.000025,0.0000841,0.297568167,0.766232087,pos,ns,0.848749267,Trp53bp1,Trp53bp1_threeUTR,2,121199706,121199755,121199754,121199755,50,+,ACATGAGACACACAAGGAATCCCACTGGCAAGGCACAGGAAGTACTTCCG,3' UTR,2,121193281,121211975,18695,2,Trp53bp1-211,12220,Trp53bp1-211;Trp53bp1-201;Trp53bp1-202;Trp53bp1-216;Trp53bp1-217;Trp53bp1-218;Tubgcp4-203;Tubgcp4-208;Tubgcp4-215;Tubgcp4-201;Tubgcp4-211;Tubgcp4-209;Tubgcp4-213,Trp53bp1;Trp53bp1;Trp53bp1;Trp53bp1;Trp53bp1;Trp53bp1;Tubgcp4;Tubgcp4;Tubgcp4;Tubgcp4;Tubgcp4;Tubgcp4;Tubgcp4,0;0;0;0;0;8007;0;0;0;0;0;12347;7759,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,5,27223,ENSMUSG00000043909,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3847,cg17324187,0.0000191,0.00000412,4.63356708,0.0000053,gain,ns,-0.0000264,0.000007,-3.777430883,0.000189954,neg,ns,0.005515211,0.002051261,2.688693341,0.007561153,pos,ns,2.121411993,-0.000283545,0.0000705,-4.019481007,0.0000733,neg,ns,0.870859827,Zmiz1,Zmiz1_fiveUTR,14,25572060,25572109,25572108,25572109,50,+,ACGGCCAGAATGAATTCTATGGACAGGCACATCCAGCAGACCAATGACCG,5' UTR,14,25459224,25666743,207520,1,Zmiz1-208,112836,Zmiz1-208;Zmiz1-201;Zmiz1-202;Zmiz1-205,Zmiz1;Zmiz1;Zmiz1;Zmiz1,0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,15,328365,ENSMUSG00000007817,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22377,cg12774174,0.0000921,0.0000104,8.861321979,6.30E-17,gain,yes,-0.0000667,0.0000177,-3.776535089,0.000190608,neg,ns,-0.007829911,0.005175349,-1.512924134,0.131317721,neg,ns,0.881676662,0.00040564,0.00017798,2.279135396,0.023338564,pos,ns,0.174370775,Grem1,Grem1_Promoter,2,113758877,113758926,113758925,113758926,50,-,GGTCACCCCAGGGAACCGCGCCTGGAATGCACAGCAAATCACATTTTCCG,Promoter (<=1kb),2,113746164,113758646,12483,2,Grem1-201,-280,Grem1-201,Grem1,-231,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,4,4,23892,ENSMUSG00000074934,conserved gene but different region,2,113758428,113758970,543,*,543,54,0.67587477,0.887953486,0.099447514,4.38E-41,CpGisland,TRUE,U13,Hc-P
11248,cg17656516,0.000106026,0.000024,4.426234535,0.0000133,gain,ns,0.000153678,0.0000407,3.776380683,0.000190721,pos,ns,0.003775332,0.01192211,0.316666395,0.751709887,pos,ns,0.123949738,0.000770889,0.00041,1.880214749,0.061016316,pos,ns,0.619127306,Nr4a2,Nr4a2_Promoter,2,57122995,57123044,57122995,57122996,50,+,CGTATCAGGTCAAGGGATATAAATTGTACCAGGTAATTCATTTTGCTGTT,Promoter (<=1kb),2,57106830,57124003,17174,2,Nr4a2-203,959,Nr4a2-203;Nr4a2-206,Nr4a2;Nr4a2,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,2,25,18227,ENSMUSG00000026826,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21648,cg18312439,0.000314405,0.0000289,10.88808077,1.36E-23,gain,yes,-0.000185221,0.0000491,-3.775655753,0.000191252,neg,ns,0.110087561,0.01437193,7.659900762,2.40E-13,pos,yes,12.62060228,-0.001108994,0.000494249,-2.243793197,0.02555137,neg,ns,0.489925831,Zfhx3,Zfhx3_Intron,8,108767491,108767540,108767491,108767492,50,-,CGCTGGGAGCATCTTGCAGGGACCCTGCAATTATCATAATAAACAGTTTT,"Intron (Zfhx3-204/Zfhx3, intron 7 of 15)",8,107942644,108961630,1018987,1,Zfhx3-204,824847,Zfhx3-204;Zfhx3-202;Zfhx3-201,Zfhx3;Zfhx3;Zfhx3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,114,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
27047,cg24957775,0.0000248,0.00000351,7.069798836,1.03E-11,gain,yes,-0.0000225,0.00000597,-3.774095859,0.000192399,neg,ns,-0.00444886,0.001749075,-2.543549575,0.011458688,neg,ns,1.940865119,0.000188089,0.0000602,3.126977163,0.001933657,pos,ns,0.929099339,Rasal2,Rasal2_Exon,1,157147705,157147754,157147705,157147706,50,+,CGGGCCTTGTATTCCAGCAGCAGCTTCTGCATCTGCTGCTCCTGCACCAG,"Exon (Rasal2-201/Rasal2, exon 16 of 18)",1,157135182,157412595,277414,2,Rasal2-201,264841,Rasal2-201;Rasal2-204,Rasal2;Rasal2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,10,226525,ENSMUSG00000070565,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
250,cg06529586,0.0000592,0.00000899,6.591278109,1.87E-10,gain,yes,-0.0000576,0.0000153,-3.773753977,0.000192652,neg,ns,0.033861977,0.004473633,7.569233811,4.33E-13,pos,yes,12.36382196,-0.000518176,0.000153848,-3.368105604,0.000852362,neg,ns,0.718570264,Gm21992,Gm21992_Exon,19,4804008,4804057,4804008,4804009,50,+,CGCGTAGTCTGATAAAGCAGCAGACAGAGGGTTAGCAATTAGGGGGGCAG,"Exon (Rbm14-201/Rbm14, exon 2 of 3)",19,4742913,4811612,68700,2,Gm21992-203,7555,Gm21992-203;Gm21992-206;Gm21992-204;Gm21992-201;Gm21992-205;Gm21992-202;Rbm14-201;Rbm14-202;Rbm14-203,Gm21992;Gm21992;Gm21992;Gm21992;Gm21992;Gm21992;Rbm14;Rbm14;Rbm14,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,27,48,102902673,ENSMUSG00000096370,mapped to different genes,19,4803923,4804011,89,*,89,8,0.561797753,1.146537842,0.08988764,0.00000491,CpGisland,TRUE,U10,Tr-S
2904,cg15288049,0.0000078,0.00000311,2.504446401,0.012777553,gain,ns,0.00002,0.00000529,3.773471235,0.00019286,pos,ns,0.00348276,0.001550015,2.246919645,0.025348522,pos,ns,1.596047359,0.0000511,0.0000533,0.959485736,0.338061837,pos,ns,0.940786974,Lrmda,Lrmda_Intron,14,22037591,22037640,22037591,22037592,50,+,CGACAAATGCCAGCTTTGCTGTGGGTACATCGCGTGCTCAATGACAATAA,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,17879,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206,Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7031,cg05811474,0.000056,0.00000487,11.51232686,8.99E-26,gain,yes,-0.0000312,0.00000827,-3.772977387,0.000193226,neg,ns,0.003672573,0.002422399,1.516088836,0.130515898,pos,ns,0.884336584,-0.00000667,0.0000833,-0.080061354,0.936240118,neg,ns,0.070211859,Tfap2a,Tfap2a_Intergenic_downstream,13,40709078,40709127,40709126,40709127,50,+,ATTGAAATGGCGTGTGCCAGGGCTGATGGGAGCCAGCGAGGGACAAAGCG,Distal Intergenic,13,40716724,40728944,12221,2,Tfap2a-209,19817,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,15,57,21418,ENSMUSG00000021359,mapped to different genes,13,40709088,40709361,274,*,274,22,0.653284672,0.763037975,0.080291971,5.99E-15,CpGisland,TRUE,U13,Hc-P
17756,cg17161441,0.000242388,0.0000103,23.44532725,1.23E-70,gain,yes,-0.0000663,0.0000176,-3.772749812,0.000193394,neg,ns,0.004844555,0.005145556,0.941502698,0.3471804,pos,ns,0.459444801,0.000171478,0.000176955,0.969047739,0.333276806,pos,ns,0.844318598,Fto,Fto_Intron,8,91630633,91630682,91630681,91630682,50,+,AATATCCCTAGAAGCTAGTTGTGTCTAATGTTCCATGTAGTATTTGAACG,"Intron (Fto-201/Fto, intron 8 of 8)",8,91313525,91668439,354915,1,Fto-201,317108,Fto-201;Fto-205,Fto;Fto,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,26,26383,ENSMUSG00000055932,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11019,cg23662713,-0.00000693,0.0000146,-0.474102216,0.635760771,loss,ns,0.0000937,0.0000248,3.772211936,0.000193794,pos,ns,0.020967315,0.007278129,2.880865857,0.004242334,pos,ns,2.372395116,-0.000381127,0.000250294,-1.522717514,0.1288488,neg,ns,0.155601048,Mbip,Mbip_Intergenic_downstream,12,56301938,56301987,56301986,56301987,50,+,ACAGCTGCTGTTTGAACCCAGTTCTGACCGTAAAATCAAAAGTGGGTCCG,Distal Intergenic,12,56340511,56345821,5311,2,Mbip-202,43834,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,12,13,217588,ENSMUSG00000021028,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
26138,cg08563010,-0.000187838,0.0000241,-7.784259965,1.06E-13,loss,yes,-0.000154595,0.000041,-3.771134184,0.000194595,neg,ns,0.071132589,0.012009974,5.922792895,8.40E-09,pos,ns,8.075597191,-0.002713553,0.000413022,-6.569997086,2.13E-10,neg,yes,0.386158676,Sox5,Sox5_Intron,6,144181099,144181148,144181147,144181148,50,-,TTCTGTTTCACTTGTTGGCAAACTTACATTTCAAAACAACAACAAAAACG,"Intron (Sox5-201/Sox5, intron 1 of 14)",6,143828425,144209480,381056,2,Sox5-201,28332,Sox5-201;Sox5-214;Sox5-205;Sox5-202;Sox5-209;Sox5-207;Sox5-210;Sox5-212;Sox5-208;Sox5-213,Sox5;Sox5;Sox5;Sox5;Sox5;Sox5;Sox5;Sox5;Sox5;Sox5,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,71,20678,ENSMUSG00000041540,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3533,cg16178770,0.0000255,0.0000153,1.66585997,0.096751435,gain,ns,0.000098,0.000026,3.769850003,0.000195555,pos,ns,0.024967067,0.007614911,3.278707733,0.001161407,pos,ns,2.935015383,-0.000302587,0.000261876,-1.155458554,0.248792491,neg,ns,0.617023864,Irgc1,Irgc1_Exon,7,24432417,24432466,24432417,24432418,50,-,CGCAGGTCACCTGCCTGTTTGCCCACCTGCTCGGCCAGCTTGGCCAGCGA,"Exon (Irgc1-201/Irgc1, exon 2 of 2)",7,24431922,24435534,3613,2,Irgc1-201,3068,Irgc1-201;Irgc1-204;Irgc1-202,Irgc1;Irgc1;Irgc1,0;0;19705,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,210145,ENSMUSG00000062028,conserved gene and region,7,24432257,24432555,299,*,299,26,0.66555184,0.786842105,0.086956522,1.77E-18,CpGisland,TRUE,U11,Tr-P
833,cg13688373,0.00000423,0.00000268,1.580396505,0.115035842,gain,ns,-0.0000171,0.00000455,-3.769720474,0.000195652,neg,ns,-0.000173711,0.001332152,-0.13039914,0.896335223,neg,ns,0.047529537,-0.0000455,0.0000458,-0.993662946,0.321161953,neg,ns,0.912845683,1810013L24Rik,1810013L24Rik_Exon,16,8855973,8856022,8856021,8856022,50,-,ACCTCAGCCCAGTGTGGCGATGTCATTACAGACTCACCAACCCATAAACG,"Exon (1810013L24Rik-201/1810013L24Rik, exon 4 of 4)",16,8830100,8858922,28823,1,1810013L24Rik-201,25873,1810013L24Rik-201,1810013L24Rik,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,18,19,69053,ENSMUSG00000022507,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19545,cg20532309,0.000027,0.00000857,3.1525698,0.001776742,gain,ns,0.0000549,0.0000146,3.769452197,0.000195853,pos,ns,0.00799759,0.004264333,1.875461043,0.061669098,pos,ns,1.209932402,-0.00012532,0.00014665,-0.854552089,0.393459068,neg,ns,0.276175377,Gm14816,Gm14816_Intergenic_downstream,X,99658341,99658390,99658389,99658390,50,+,TTACATGCAGTGTCCTGCCAGGCCTGATTTAAAGCTCATCCTGTAATCCG,Distal Intergenic,20,99687481,99687774,294,2,Gm14816-201,29384,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,108168471,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3280,cg00259969,0.0000288,0.0000121,2.377305829,0.018046068,gain,ns,0.0000776,0.0000206,3.768544606,0.000196535,pos,ns,0.005417666,0.006032281,0.898112372,0.369822649,pos,ns,0.432006494,-0.0000336,0.00020745,-0.162103856,0.871329676,neg,ns,0.658336729,Cdh18,Cdh18_Exon,15,23460357,23460406,23460357,23460358,50,-,CGAACTGTTCAGGATGTGTATTATCTGCCCATTATGATCTCTGATGGTGG,"Exon (Cdh18-203/Cdh18, exon 11 of 12)",15,23036463,23474418,437956,1,Cdh18-203,423894,Cdh18-203;Cdh18-204;Cdh18-207;Cdh18-205,Cdh18;Cdh18;Cdh18;Cdh18,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,4,320865,ENSMUSG00000040420,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5350,cg06580009,0.00000992,0.00000705,1.4077752,0.160199608,gain,ns,0.0000451,0.000012,3.768155493,0.000196828,pos,ns,-0.000208965,0.003506846,-0.059587823,0.952522312,neg,ns,0.021124843,0.000375808,0.0001206,3.116146534,0.002003834,pos,ns,0.883462993,Fam53a,Fam53a_Intergenic_downstream,5,33564261,33564310,33564309,33564310,50,-,CACCTTTTAGTGATTGCTTCAATTTCCGAAGATTTTGATAAAATCATGCG,Distal Intergenic,5,33600356,33628912,28557,2,Fam53a-203,64651,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,13,13,74504,ENSMUSG00000037339,conserved gene and region,5,33564258,33564437,180,*,180,11,0.494444444,1.001011122,0.061111111,0.0000017,CpGisland,TRUE,NA,NRS
27748,cg00098422,0.0000156,0.00000589,2.638840938,0.008739284,gain,ns,-0.0000377,0.00001,-3.767245803,0.000197515,neg,ns,-0.003408486,0.002933008,-1.162112655,0.246083617,neg,ns,0.608917299,0.0000169,0.000100866,0.16793164,0.866746561,pos,ns,0.899407469,Wdr26,Wdr26_threeUTR,1,181177738,181177787,181177786,181177787,50,-,CAAATCCCAAGCCATTAAAATACGACTAATTTTAAGTTAAACAGAAGTCG,3' UTR,1,181173228,181211978,38751,2,Wdr26-207,34191,Wdr26-207;Wdr26-209;Wdr26-208;Wdr26-201;Wdr26-204;Wdr26-202;Wdr26-205,Wdr26;Wdr26;Wdr26;Wdr26;Wdr26;Wdr26;Wdr26,0;0;0;0;0;5952;6609,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,7,226757,ENSMUSG00000038733,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11397,cg24657928,0.00000233,0.0000183,0.12715532,0.898899906,gain,ns,-0.000117072,0.0000311,-3.766452446,0.000198115,neg,ns,0.000426668,0.009106179,0.046854748,0.962659164,pos,ns,0.016527451,-0.000642628,0.000313161,-2.0520696,0.041002485,neg,ns,0.458959748,Galntl6,Galntl6_Exon,8,57958356,57958405,57958356,57958357,50,-,CGCATGGCATCCCCAGCTTGTGCCTCATACCCGAAGTGATTGTGGTCAAT,"Exon (Galntl6-208/Galntl6, exon 7 of 13)",8,57774052,58912640,1138589,2,Galntl6-208,954235,Galntl6-208;Galntl6-202,Galntl6;Galntl6,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,270049,ENSMUSG00000096914,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14750,cg00500341,-0.0000151,0.0000047,-3.216659534,0.00143395,loss,ns,-0.0000301,0.00000798,-3.766300769,0.00019823,neg,ns,-0.007031862,0.002338146,-3.007451885,0.00285015,neg,ns,2.545132274,-0.000057,0.0000804,-0.708442353,0.479202963,neg,ns,0.877534114,Abhd15,Abhd15_Exon,11,77537915,77537964,77537915,77537916,50,+,CGTGCTTCTGCTCATGCCCTGCTCCGTCCGTCCCCCAGAAGCTGTCCGCC,"Exon (Taok1-201/Taok1, exon 19 of 19)",11,77515984,77538607,22624,1,Abhd15-202,21931,Abhd15-202;Abhd15-203;Gm12734-201;Taok1-201;Taok1-202,Abhd15;Abhd15;Gm12734;Taok1;Taok1,0;0;-4169;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,6,67477,ENSMUSG00000000686,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16476,cg24286551,-0.0000117,0.0000102,-1.147823228,0.251926553,loss,ns,-0.0000651,0.0000173,-3.76575239,0.000198647,neg,ns,-0.016761841,0.005062068,-3.311263163,0.001038463,neg,ns,2.983608937,0.000190418,0.000174084,1.093826964,0.274880083,pos,ns,0.686980667,Cntln,Cntln_Intron,4,85119075,85119124,85119075,85119076,50,-,CGACATTTTCTGGGCCGAGTGGAAAGCTGCATAGAGGATGACAAGGCCAA,"Intron (Cntln-201/Cntln, intron 25 of 25)",4,84884309,85131921,247613,1,Cntln-201,234766,Cntln-201;Cntln-204;Cntln-203,Cntln;Cntln;Cntln,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,25,338349,ENSMUSG00000038070,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7952,cg10021193,0.0000241,0.0000162,1.487131623,0.137996442,gain,ns,0.000103836,0.0000276,3.765505347,0.000198835,pos,ns,0.007845953,0.008078698,0.971190278,0.332210687,pos,ns,0.478586401,-0.0000153,0.000277826,-0.054979485,0.956190223,neg,ns,0.491261612,Pax2,Pax2_Intergenic_upstream,19,44666827,44666876,44666875,44666876,50,+,GAAATCTTGTTTGCATTCCTCCCAATTTCCCAACGAAAGGCGCCCAACCG,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-89169,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15787,cg20941225,0.000128257,0.000014,9.144989664,8.12E-18,gain,yes,-0.0000897,0.0000238,-3.765325826,0.000198971,neg,ns,0.015508453,0.00698029,2.221749034,0.027022086,pos,ns,1.568281134,-0.000824024,0.000240052,-3.432694244,0.000678813,neg,ns,0.235815141,Tet3,Tet3_Exon,6,83440936,83440985,83440984,83440985,50,-,GCAAAAAGAATCCAAACAAAACCCACACAGGCCTGAGAATTCATTGGCCG,Promoter (<=1kb),6,83362373,83441675,79303,2,Tet3-202,690,Tet3-202;Tet3-203;Tet3-201;Tet3-204;Tet3-205,Tet3;Tet3;Tet3;Tet3;Tet3,0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,8,194388,ENSMUSG00000034832,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25275,cg14002474,0.0000104,0.0000119,0.879347513,0.379893998,gain,ns,0.0000758,0.0000201,3.763851192,0.000200097,pos,ns,0.016876042,0.005898514,2.861066687,0.004509109,pos,ns,2.345909306,-0.000447933,0.000202849,-2.208205843,0.027961603,neg,ns,0.311381339,Gm43559,Gm43559_Intergenic_upstream,3,134302726,134302775,134302774,134302775,50,+,CAGCAACATTTAGGTTCCACCTTAACAGTGCACCTTAAAAGATTATCTCG,Distal Intergenic,3,134272045,134272510,466,2,Gm43559-201,-30216,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,7,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27910,cg22800590,0.0000277,0.00000625,4.43587732,0.0000128,gain,ns,-0.0000399,0.0000106,-3.762496063,0.000201137,neg,ns,-0.001081282,0.003109829,-0.347698136,0.728302857,neg,ns,0.137687986,-0.0000255,0.000106947,-0.238358567,0.811760481,neg,ns,0.850969524,Prox1,Prox1_Exon,1,190161962,190162011,190162010,190162011,50,-,CTGGGAAATTATGGTTGCTCCTGGAAAAGGCATCATGGCATCTTCATACG,"Exon (Prox1-202/Prox1, exon 2 of 5)",1,190118035,190170714,52680,2,Prox1-202,8703,Prox1-202;Prox1-201;Prox1-203,Prox1;Prox1;Prox1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,19,59,19130,ENSMUSG00000010175,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18001,cg02082650,0.0000287,0.00000938,3.064378212,0.002372866,gain,ns,0.00006,0.0000159,3.762430279,0.000201187,pos,ns,0.018930669,0.004668508,4.054971781,0.0000635,pos,ns,4.197351786,-0.0002512,0.00016055,-1.56462485,0.118691111,neg,ns,0.43309188,Arx,Arx_threeUTR,X,93298162,93298211,93298162,93298163,50,-,CGGTAGGGTTCCTAGACAAATATTTATGTACTCAAGCCCTTTATTTAACT,3' UTR,20,93286496,93298357,11862,1,Arx-201,11666,Arx-201;Arx-202,Arx;Arx,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,threeUTR,4,32,11878,ENSMUSG00000035277,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
5071,cg01686771,0.00000252,0.00000268,0.939342172,0.348286413,gain,ns,-0.0000171,0.00000456,-3.761700748,0.000201749,neg,ns,-0.001809807,0.001335294,-1.355362091,0.176288907,neg,ns,0.753775016,-0.00000157,0.0000459,-0.034205509,0.972735287,neg,ns,0.91197813,Sgms1,Sgms1_Exon,19,32159611,32159660,32159611,32159612,50,+,CGGTTAAAATGGTCAAAAAATGTGTCCGGTAGTGGAGGCTGCACCTCCTT,"Exon (Sgms1-201/Sgms1, exon 6 of 10)",19,32122727,32388512,265786,2,Sgms1-201,228852,Sgms1-201;Sgms1-212;Sgms1-209;Sgms1-215;Sgms1-214;Sgms1-206;Sgms1-202;Sgms1-213;Sgms1-210;Sgms1-208;Sgms1-205,Sgms1;Sgms1;Sgms1;Sgms1;Sgms1;Sgms1;Sgms1;Sgms1;Sgms1;Sgms1;Sgms1,0;0;0;0;0;0;0;36768;79152;163569;117266,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,8,208449,ENSMUSG00000040451,conserved gene and region,19,32159576,32159686,111,*,111,9,0.504504505,1.274234694,0.081081081,0.00000221,CpGisland,TRUE,U10,Tr-S
12874,cg11779147,-0.0000338,0.0000141,-2.392482847,0.017329978,loss,ns,0.0000903,0.000024,3.759513998,0.000203443,pos,ns,-0.012367501,0.00703967,-1.756829608,0.079934093,neg,ns,1.097267948,0.000610876,0.000242094,2.523304014,0.012125548,pos,ns,0.586915307,Gm47010,Gm47010_Intergenic_upstream,14,67613450,67613499,67613450,67613451,50,-,CGCAGGAAATGGCAGGACAGTGAGACGCAAAATAAATGAGTTCACTTCCA,Distal Intergenic,14,67588363,67588792,430,2,Gm47010-201,-24707,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,8,,NA,mapped to different genes,14,67613379,67613666,288,*,288,13,0.475694444,0.81038961,0.045138889,0.00000402,CpGisland,TRUE,U9,En-Pp
10831,cg10856741,-0.0000279,0.00000565,-4.933007642,0.00000132,loss,yes,-0.0000361,0.00000959,-3.75846152,0.000204262,neg,ns,0.014226611,0.002810453,5.062034999,0.000000713,pos,ns,6.147146325,-0.000519481,0.0000967,-5.374794563,0.000000151,neg,yes,0.851448391,Fam193b,Fam193b_fiveUTR,13,55556084,55556133,55556084,55556085,50,+,CGAGCTTTGGCATGAAGTCAGGGGGCAGCTTCTCACCCTGCAACACCAGT,5' UTR,13,55539316,55571100,31785,2,Fam193b-206,14967,Fam193b-206;Fam193b-201;Fam193b-204;Fam193b-203;Fam193b-207,Fam193b;Fam193b;Fam193b;Fam193b;Fam193b,0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,11,212483,ENSMUSG00000021495,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16280,cg21309927,0.000053,0.00000667,7.955144079,3.39E-14,gain,yes,-0.0000426,0.0000113,-3.757801531,0.000204778,neg,ns,-0.007111925,0.003318821,-2.142906903,0.032898878,neg,ns,1.482818913,0.000168459,0.000114134,1.475974315,0.140965791,pos,ns,0.749666398,Nfix,Nfix_threeUTR,8,84713762,84713811,84713810,84713811,50,-,CTACCTGAGACTGCTGTGGGATGTTCAGAAAGTTGCCGTCCCGGGGTCCG,3' UTR,8,84704712,84773396,68685,2,Nfix-204,59585,Nfix-204;Nfix-201;Nfix-202;Nfix-203;Nfix-206;Nfix-205,Nfix;Nfix;Nfix;Nfix;Nfix;Nfix,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,5,49,18032,ENSMUSG00000001911,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18290,cg16317419,0.0000196,0.00000689,2.848257839,0.004689739,gain,ns,-0.000044,0.0000117,-3.756638291,0.00020569,neg,ns,0.017297022,0.003431693,5.040375358,0.000000791,pos,ns,6.101646987,-0.000968917,0.000118016,-8.210074,6.02E-15,neg,yes,0.887044877,Dyrk1a,Dyrk1a_threeUTR,16,94693165,94693214,94693213,94693214,50,+,ATAGACTTTTGTGACCCACTAATTGTAAGGTATTGCAAGGTCACTTTGCG,3' UTR,16,94570010,94695067,125058,1,Dyrk1a-202,123155,Dyrk1a-202;Dyrk1a-203;Dyrk1a-201,Dyrk1a;Dyrk1a;Dyrk1a,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,14,13548,ENSMUSG00000022897,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27612,cg13082458,0.00000683,0.00000714,0.956036903,0.339798533,gain,ns,-0.0000456,0.0000121,-3.755857737,0.000206304,neg,ns,0.008850191,0.003554546,2.489823187,0.013304425,pos,ns,1.876003897,-0.000528277,0.000122241,-4.321618934,0.0000209,neg,ns,0.824153287,Dcaf8,Dcaf8_Exon,1,172186868,172186917,172186916,172186917,50,+,CCAAAGCAAACATCACCTGTCTTGTGTACAGCCACGACGGCACAGGTACG,"Exon (Dcaf8-211/Dcaf8, exon 9 of 10)",1,172148084,172194794,46711,1,Dcaf8-207,38784,Dcaf8-207;Dcaf8-211;Dcaf8-202;Dcaf8-209;Dcaf8-206;Dcaf8-201;Dcaf8-204;Dcaf8-210;Dcaf8-205;Dcaf8-203,Dcaf8;Dcaf8;Dcaf8;Dcaf8;Dcaf8;Dcaf8;Dcaf8;Dcaf8;Dcaf8;Dcaf8,0;0;0;0;0;0;0;0;8331;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,2,98193,ENSMUSG00000026554,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13989,cg21381839,-0.00000913,0.00000429,-2.128799468,0.034058988,loss,ns,0.0000274,0.00000729,3.75562109,0.00020649,pos,ns,0.006007608,0.002134504,2.81452148,0.005197422,pos,ns,2.284212061,-0.000161862,0.0000734,-2.20504796,0.028184696,neg,ns,0.862747521,Mecp2,Mecp2_Exon,X,74036398,74036447,74036398,74036399,50,-,CGTGAAGTCAAAATCATTAGGGTCCAGGGATGTGTCGCCTACCTTTTCGA,"Exon (Mecp2-202/Mecp2, exon 4 of 4)",20,74026592,74085669,59078,2,Mecp2-202,49222,Mecp2-202;Mecp2-205;Mecp2-201;Mecp2-203;Mecp2-204,Mecp2;Mecp2;Mecp2;Mecp2;Mecp2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,10,17257,ENSMUSG00000031393,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19556,cg23108121,0.0000819,0.0000135,6.054349012,4.07E-09,gain,yes,0.0000863,0.000023,3.753147405,0.00020845,pos,ns,0.029457425,0.006733264,4.374910316,0.0000166,pos,ns,4.77946704,-0.000775993,0.000231556,-3.351204387,0.000904166,neg,ns,0.43710035,Tmem28,Tmem28_fiveUTR,X,99821056,99821105,99821104,99821105,50,-,ACCCCCCTGAAATATGTTCAGGGGCGCTTGGATGTGGCCCGGGAAAGACG,Promoter (<=1kb),20,99821021,99848790,27770,1,Tmem28-201,35,Tmem28-201,Tmem28,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,7,620592,ENSMUSG00000071719,conserved gene but different region,X,99820045,99821113,1069,*,1069,144,0.779232928,0.896718046,0.134705332,6.18E-130,CpGisland,TRUE,U3,Pr-B
19553,cg22232845,-0.0000137,0.0000197,-0.693554968,0.488480673,loss,ns,0.000125658,0.0000335,3.752922676,0.000208628,pos,ns,-0.010722344,0.009809289,-1.093080626,0.275207091,neg,ns,0.56034038,0.001082764,0.000337341,3.209704584,0.00146794,pos,ns,0.825307968,Cldn18,Cldn18_Intron,9,99744693,99744742,99744693,99744694,50,+,CGAAGTGCTCCCATTTATTGGCTGAGCGACTGCATCAGTCATTCATTCAC,"Intron (Gm16004-201/Gm16004-201, intron 2 of 2)",9,99692722,99717267,24546,2,Cldn18-203,-27426,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,3,56492,ENSMUSG00000032473,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24937,cg02630138,0.0000335,0.0000125,2.676452003,0.007836372,gain,ns,0.0000797,0.0000212,3.752348765,0.000209086,pos,ns,0.02821291,0.006224343,4.532672967,0.00000833,pos,ns,5.079467907,-0.000651152,0.000214055,-3.041992079,0.002551027,neg,ns,0.665987262,Adgrb2,Adgrb2_Exon,4,130005419,130005468,130005467,130005468,50,-,TGGAGCGTGTGTTCCCTGACGTGTGGGCAGGGTCTGCAGGTGCGGACCCG,"Exon (Adgrb2-207/Adgrb2, exon 4 of 28)",4,129984870,130022633,37764,1,Adgrb2-207,20549,Adgrb2-207;Adgrb2-205;Adgrb2-208;Adgrb2-204;Adgrb2-201;Adgrb2-202;Adgrb2-206;Adgrb2-211;Adgrb2-203,Adgrb2;Adgrb2;Adgrb2;Adgrb2;Adgrb2;Adgrb2;Adgrb2;Adgrb2;Adgrb2,0;0;0;0;0;0;0;-4408;-4601,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,8,230775,ENSMUSG00000028782,conserved gene and region,4,130005366,130005561,196,*,196,15,0.683673469,0.655518395,0.076530612,4.88E-10,CpGisland,TRUE,U13,Hc-P
22192,cg19514725,0.0000274,0.0000148,1.850936419,0.065129779,gain,ns,0.0000945,0.0000252,3.749868707,0.000211073,pos,ns,0.022532639,0.007380627,3.052943886,0.002462384,pos,ns,2.60864415,-0.00037329,0.000253819,-1.470691741,0.142388774,neg,ns,0.358328841,Hdx,Hdx_fiveUTR,X,111697074,111697123,111697122,111697123,50,-,GACAATGAAATCAGCGTGTCCGATCATCAATTCTCATCATGATCGTGACG,Promoter (<=1kb),20,111569931,111697079,127149,2,Hdx-202,0,Hdx-202;Hdx-201,Hdx;Hdx,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,8,245596,ENSMUSG00000034551,conserved gene but different region,X,111697031,111697165,135,*,135,10,0.533333333,1.062155783,0.074074074,0.00000108,CpGisland,TRUE,NA,NRS
19869,cg02769235,0.00010799,0.0000126,8.567226894,5.07E-16,gain,yes,0.0000803,0.0000214,3.749393323,0.000211456,pos,ns,0.037446122,0.006273645,5.968798778,6.53E-09,pos,ns,8.185083307,-0.000728571,0.00021575,-3.376919102,0.000826459,neg,ns,0.457687827,Gjb1,Gjb1_Exon,X,101384865,101384914,101384865,101384866,50,-,CGGGCTTCGGCCACCGCCTCTCACCTGAATACAAGCAGAATGAGATCAAC,"Exon (Gjb1-202/Gjb1, exon 2 of 2)",20,101376378,101385629,9252,1,Gjb1-202,8487,Gjb1-202;Gjb1-201;Gjb1-203,Gjb1;Gjb1;Gjb1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,14618,ENSMUSG00000047797,conserved gene and region,X,101384707,101384880,174,*,174,18,0.655172414,1.008695652,0.103448276,2.56E-14,CpGisland,TRUE,NA,NRS
23338,cg15211532,0.000127937,0.0000137,9.361447197,1.66E-18,gain,yes,-0.000087,0.0000232,-3.747226838,0.00021321,neg,ns,0.033154039,0.006801881,4.87424588,0.00000175,pos,ns,5.757764594,-0.001400303,0.000233916,-5.986348997,5.93E-09,neg,yes,0.450553161,St3gal3,St3gal3_fiveUTR,4,117964365,117964414,117964365,117964366,50,+,CGGATTCTAGCCCACTTGCGAAAGGAGTCATCCAGGAACATGGGTGCTGG,5' UTR,4,117932154,118134890,202737,2,St3gal3-201,170476,St3gal3-201;St3gal3-203;St3gal3-202;St3gal3-205;St3gal3-204,St3gal3;St3gal3;St3gal3;St3gal3;St3gal3,0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,1,20441,ENSMUSG00000028538,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26967,cg19303255,0.0000152,0.0000134,1.13232288,0.258373786,gain,ns,0.0000852,0.0000227,3.744269699,0.000215626,pos,ns,0.024187936,0.006663487,3.629921443,0.000331532,pos,ns,3.479474111,-0.000615559,0.000229157,-2.686189865,0.007616719,neg,ns,0.427885614,Ptchd1,Ptchd1_fiveUTR,X,155623264,155623313,155623264,155623265,50,-,CGGGAGAAACACGTCCTCAAGCCCCTGTGCAGAACCTGCCGCAGCATCCT,Promoter (<=1kb),20,155573455,155623325,49871,2,Ptchd1-201,12,Gm15155-202;Gm15155-201;Ptchd1-201;Ptchd1-203;Ptchd1-202,Gm15155;Gm15155;Ptchd1;Ptchd1;Ptchd1,-1428;-1462;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,11,211612,ENSMUSG00000041552,conserved gene but different region,X,155623027,155623834,808,*,808,97,0.735148515,0.890798327,0.120049505,4.32E-82,CpGisland,TRUE,U3,Pr-B
3952,cg07088808,-0.00000306,0.00000462,-0.661875395,0.508542775,loss,ns,0.0000294,0.00000785,3.743854389,0.000215967,pos,ns,0.008243339,0.002298504,3.586392342,0.000389418,pos,ns,3.409583505,-0.000254433,0.000079,-3.218817472,0.001423553,neg,ns,0.906025593,5730522E02Rik,5730522E02Rik_Intron,11,25902204,25902253,25902204,25902205,50,-,CGGTGAACGCTGCTAAGCTTTTGAATTATGACAAGAACCAGCAGCTCAGT,"Intron (5730522E02Rik-202/5730522E02Rik, intron 2 of 5)",11,25617668,26210569,592902,2,5730522E02Rik-202,308316,5730522E02Rik-202;5730522E02Rik-201;5730522E02Rik-204,5730522E02Rik;5730522E02Rik;5730522E02Rik,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,90,70626,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24517,cg00220722,0.0000788,0.00000889,8.86100144,6.31E-17,gain,yes,-0.0000566,0.0000151,-3.743529898,0.000216234,neg,ns,-0.009212837,0.004425923,-2.081562787,0.038202672,neg,ns,1.417906262,0.0000482,0.000152207,0.31659995,0.751760262,pos,ns,0.813139528,Ncdn,Ncdn_threeUTR,4,126743764,126743813,126743812,126743813,50,-,CCAATGAACATTTATTGAGTGTCCACATGTGCACAGCTTTGAACTTGGCG,3' UTR,4,126743750,126753409,9660,2,Ncdn-201,9596,Ncdn-201;Ncdn-202;Ncdn-203,Ncdn;Ncdn;Ncdn,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,3,26562,ENSMUSG00000028833,conserved gene and region,4,126743812,126743914,103,*,103,9,0.650485437,0.882857143,0.087378641,0.00000118,CpGisland,TRUE,U11,Tr-P
16269,cg11935737,0.0000216,0.00000732,2.957983061,0.003334813,gain,ns,0.0000464,0.0000124,3.737529991,0.000221229,pos,ns,0.022993026,0.003640762,6.315442521,9.33E-10,pos,ns,9.030078887,-0.000386883,0.000125206,-3.08998655,0.002183137,neg,ns,0.431524126,Mrm1,Mrm1_Intergenic_downstream,11,84701557,84701606,84701605,84701606,50,+,ACAATAACGCTCAGAGGCAACAAATGCTGATGAGTTTTCTATGCAGTCCG,Distal Intergenic,11,84814743,84815390,648,2,Mrm1-203,113784,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,37,42,217038,ENSMUSG00000018405,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17680,cg19078816,0.000041,0.00000655,6.266954551,1.23E-09,gain,yes,0.0000416,0.0000111,3.736519926,0.00022208,pos,ns,0.014556591,0.003259964,4.465261223,0.0000112,pos,ns,4.950240512,-0.000081,0.00011211,-0.722176073,0.470730636,neg,ns,0.114336089,Elavl2,Elavl2_Promoter,4,91375878,91375927,91375926,91375927,50,+,CTGGGTTTGCCAGCGCATCGCTGCAACTAATGATTAAAGAAACCAAACCG,Promoter (<=1kb),4,91250763,91376463,125701,2,Elavl2-208,536,Elavl2-204;Elavl2-201;Elavl2-207;Elavl2-208;Elavl2-202;Elavl2-209;Elavl2-203;Elavl2-205;Elavl2-215;Elavl2-212;Elavl2-214;Elavl2-211,Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,4,31,15569,ENSMUSG00000008489,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
26465,cg17698820,-0.0000223,0.0000071,-3.1348472,0.001884092,loss,ns,-0.0000451,0.0000121,-3.735584605,0.000222871,neg,ns,0.005900671,0.00353476,1.669327269,0.096062026,pos,ns,1.017448256,-0.000921018,0.00012156,-7.576645567,4.12E-13,neg,yes,0.766113414,Mtor,Mtor_Exon,4,148549393,148549442,148549393,148549394,50,-,CGTCTGAGTGGGAAGATCCTGCACATTGACTTTGGGGACTGCTTTGAGGT,"Exon (Mtor-202/Mtor, exon 51 of 58)",4,148448611,148557683,109073,1,Mtor-202,100782,Mtor-202;Mtor-204,Mtor;Mtor,0;4980,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,5,56717,ENSMUSG00000028991,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15322,cg22705792,-0.0000519,0.0000099,-5.241137973,0.000000296,loss,yes,0.0000628,0.0000168,3.734854944,0.00022349,pos,ns,0.002626501,0.004928202,0.532953109,0.594447882,pos,ns,0.225886216,-0.000187704,0.00016948,-1.107528801,0.268923969,neg,ns,0.460637561,Gm46388,Gm46388_Intergenic_upstream,13,80347338,80347387,80347386,80347387,50,-,CATGACATCTCAAAATTCAAACTTAATGAGAGCTTTGGCAGCTTCTGTCG,Distal Intergenic,13,80493009,80493484,476,1,Gm46388-201,-145671,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,11,108168047,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24917,cg08170844,-0.00000409,0.00000189,-2.164553315,0.031184947,loss,ns,-0.000012,0.00000321,-3.73439893,0.000223878,neg,ns,0.000395006,0.000939951,0.420241329,0.674600301,pos,ns,0.17095347,-0.0000336,0.0000323,-1.038483746,0.299854211,neg,ns,0.947564764,Elovl6,Elovl6_threeUTR,3,129633251,129633300,129633251,129633252,50,+,CGAGTCTCCCGGAAGTTTGCCATGTTCATCACCTTGTCCCAGATCACTCA,3' UTR,3,129532355,129634971,102617,1,Elovl6-205,100896,Elovl6-205;Elovl6-202;Elovl6-201;Elovl6-203;Elovl6-204,Elovl6;Elovl6;Elovl6;Elovl6;Elovl6,0;0;0;0;80871,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,2,170439,ENSMUSG00000041220,conserved gene but different region,3,129633166,129633261,96,*,96,8,0.583333333,0.990967742,0.083333333,0.00000859,CpGisland,TRUE,U11,Tr-P
17236,cg03259543,0.0000723,0.00000678,10.65780589,8.37E-23,gain,yes,-0.000043,0.0000115,-3.733727593,0.00022445,neg,ns,0.01424344,0.003375379,4.21980493,0.0000321,pos,ns,4.492832453,-0.000543301,0.000116079,-4.680440876,0.00000428,neg,ns,0.799201975,Sbf1,Sbf1_threeUTR,15,89300346,89300395,89300394,89300395,50,-,CACCAGGCTGCTCATGGTCATGCGGTCGGAGGGCTTCAGGGCTGAGGACG,3' UTR,15,89288236,89315311,27076,2,Sbf1-201,14916,Sbf1-201;Sbf1-205;Sbf1-203;Sbf1-202;Sbf1-208;Sbf1-209;Sbf1-204;Sbf1-211;Sbf1-207,Sbf1;Sbf1;Sbf1;Sbf1;Sbf1;Sbf1;Sbf1;Sbf1;Sbf1,0;0;0;-4695;0;2235;2939;4700;6222,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,77980,ENSMUSG00000036529,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18806,cg05372452,0.0000107,0.00000808,1.322262607,0.18705547,gain,ns,0.0000512,0.0000137,3.732861083,0.00022519,pos,ns,0.009779672,0.004022131,2.431465301,0.015604226,pos,ns,1.806757764,-0.0000463,0.000138321,-0.334797818,0.738004024,neg,ns,0.672776993,Gm5186,Gm5186_Intergenic_downstream,12,97511964,97512013,97512012,97512013,50,-,TATCACTGCCTTTAATGACCATAAACCAGAAAATCTTGCATAATTCAGCG,Distal Intergenic,12,97564149,97565068,920,2,Gm5186-201,53104,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,382626,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25785,cg26973693,0.000107191,0.00000716,14.96315143,1.77E-38,gain,yes,-0.0000454,0.0000122,-3.732810657,0.000225233,neg,ns,-0.000132991,0.003565423,-0.037300337,0.970269545,neg,ns,0.0131076,0.00021047,0.000122615,1.716519893,0.087065855,pos,ns,0.232022256,Uncx,Uncx_fiveUTR,5,139543500,139543549,139543500,139543501,50,+,CGCTCAATGTCTCTCTGTAATTGGAGCAACATCACTTTAAAGGTTCAGAG,Promoter (<=1kb),5,139543494,139548179,4686,1,Uncx-201,6,Uncx-201;Uncx-202,Uncx;Uncx,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,88,22255,ENSMUSG00000029546,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
1734,cg05966186,0.000000851,0.00000661,0.128701376,0.897677404,gain,ns,0.0000419,0.0000112,3.732429046,0.00022556,pos,ns,0.004377069,0.003289088,1.330784688,0.184237857,pos,ns,0.734621127,0.000027,0.000113111,0.239078937,0.811202355,pos,ns,0.113390031,Gm5513,Gm5513_Intergenic_downstream,19,14891006,14891055,14891054,14891055,50,-,AAACTGCTAGCTGTAAATGAGGTCAATATGTCTGGTTCATAAACAGTCCG,Distal Intergenic,19,14959549,14960766,1218,2,Gm5513-201,69760,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,22,433225,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
5649,cg05777973,-0.0000234,0.0000077,-3.04382738,0.00253597,loss,ns,-0.0000488,0.0000131,-3.729522461,0.000228064,neg,ns,0.017473028,0.003831203,4.56071559,0.00000735,pos,ns,5.13367917,-0.000580315,0.000131755,-4.40450621,0.0000146,neg,ns,0.844359684,Mapkap1,Mapkap1_Intron,2,34487558,34487607,34487558,34487559,50,-,CGTTCTTAATAATAAAAGCTTAATGGAACCAAGGTTGGTGATTCAGAGGA,"Intron (Mapkap1-210/Mapkap1, intron 4 of 4)",2,34406771,34497716,90946,1,Mapkap1-210,80787,Mapkap1-210;Mapkap1-204;Mapkap1-202;Mapkap1-201;Mapkap1-209;Mapkap1-203;Mapkap1-207;Mapkap1-206,Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,59,227743,ENSMUSG00000038696,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22017,cg26991442,-0.000013,0.000017,-0.764774166,0.444987813,loss,ns,0.000107793,0.0000289,3.729396021,0.000228174,pos,ns,0.010326465,0.008467784,1.219500395,0.223581355,pos,ns,0.650564416,-0.000359478,0.000291206,-1.234445002,0.217972055,neg,ns,0.595091699,Gm7134,Gm7134_Intergenic_upstream,X,110177246,110177295,110177294,110177295,50,-,GCCAATTTCTAAAGTTACGCTTTTATCCACTAAACAAGCATCCTGATCCG,Distal Intergenic,20,110372753,110375158,2406,1,Gm7134-201,-195507,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,634340,ENSMUSG00000082853,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3243,cg23141779,-0.0000253,0.0000129,-1.963761567,0.050451182,loss,ns,0.0000816,0.0000219,3.72933919,0.000228223,pos,ns,0.009129845,0.006412606,1.423734119,0.155529166,pos,ns,0.808188156,-0.000326326,0.000220529,-1.479741396,0.139957769,neg,ns,0.760456564,Gm11888,Gm11888_Intron,4,23341370,23341419,23341370,23341371,50,+,CGTGGGATGACAGCTGCAACACGTACTCAGGCGCAATAAACAGCTAAATG,"Intron (Gm11884-201/Gm11884-201, intron 1 of 4)",4,23484820,23486020,1201,1,Gm11888-201,-143401,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,14,625462,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26322,cg08978913,0.0000247,0.0000105,2.343335516,0.019743939,gain,ns,0.0000668,0.0000179,3.727798671,0.000229561,pos,ns,0.015164223,0.00524694,2.890108067,0.004122798,pos,ns,2.384807926,-0.000229259,0.000180442,-1.27054466,0.204843373,neg,ns,0.622307969,Gm14111,Gm14111_Intergenic_downstream,2,146745446,146745495,146745446,146745447,50,+,CGGCTTTAACCTCTATTAGTGAGGATTATGAGGACGTAGCCACATTGGCA,Distal Intergenic,2,146754707,146755705,999,2,Gm14111-201,10210,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,15,17,668918,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6117,cg04254211,-0.0000251,0.00000665,-3.779726892,0.000188288,loss,ns,0.0000421,0.0000113,3.727795835,0.000229564,pos,ns,-0.001603821,0.003308784,-0.484716289,0.628219922,neg,ns,0.201888295,0.000389552,0.000113789,3.423467012,0.000701404,pos,ns,0.070436521,Lhx6,Lhx6_Intron,2,36104062,36104111,36104062,36104063,50,+,CGCCGAACAATGAGTCCTAACTTTGTAGTGGGCATTTAAAGCCCTTCCCC,"Intron (Lhx6-201/Lhx6, intron 1 of 9)",2,36081953,36105271,23319,2,Lhx6-201,1160,Lhx6-202;Lhx6-204;Lhx6-201;Lhx6-205;Lhx6-203;Lhx6-208;Lhx6-209;Lhx6-207,Lhx6;Lhx6;Lhx6;Lhx6;Lhx6;Lhx6;Lhx6;Lhx6,0;0;0;0;0;0;-470;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,9,16874,ENSMUSG00000026890,conserved gene but different region,2,36103991,36104063,73,*,73,8,0.657534247,1.020979021,0.109589041,0.00000108,CpGisland,TRUE,U3,Pr-B
7807,cg25945416,0.0000375,0.0000217,1.729227491,0.084763887,gain,ns,0.000137115,0.0000368,3.726209431,0.00023095,pos,ns,0.025076938,0.010780429,2.326154031,0.020654897,pos,ns,1.684976969,-0.000359511,0.000370738,-0.969716798,0.332943647,neg,ns,0.672658008,Gm12455,Gm12455_Intergenic_downstream,4,44392927,44392976,44392975,44392976,50,+,TATTCAGCGCAAAGTGCCAGCTGGGGAATTGATTATGTCTTCTCTCAGCG,Distal Intergenic,4,44382922,44383337,416,1,Gm12455-201,10005,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,15,15,,NA,mapped to different genes,4,44392975,44393204,230,*,230,20,0.686956522,0.737534071,0.086956522,2.53E-14,CpGisland,TRUE,U15,NS
12193,cg16496042,-0.0000309,0.0000196,-1.57360694,0.116598348,loss,ns,-0.000124316,0.0000334,-3.725978629,0.000231152,neg,ns,0.065476901,0.009774682,6.698622193,9.90E-11,pos,yes,10.00414756,-0.00243004,0.00033615,-7.229024579,3.82E-12,neg,yes,0.604180847,Aopep,Aopep_threeUTR,13,63301229,63301278,63301277,63301278,50,+,TATCAGTTCTCATTTTACACACTGGCTCAGTTCAGCAGGAACAGGAGTCG,Promoter (<=1kb),13,63301255,63302560,1306,1,Aopep-222,0,Aopep-202;Aopep-201;Aopep-208;Aopep-219;Aopep-224;Aopep-227;Aopep-203;Aopep-216;Aopep-209;Aopep-210;Aopep-228;Aopep-213;Aopep-225;Aopep-226;Aopep-221;Aopep-214;Aopep-205;Aopep-222;Aopep-211;Fancc-218;Fancc-201,Aopep;Aopep;Aopep;Aopep;Aopep;Aopep;Aopep;Aopep;Aopep;Aopep;Aopep;Aopep;Aopep;Aopep;Aopep;Aopep;Aopep;Aopep;Aopep;Fancc;Fancc,0;0;0;0;0;0;0;0;0;0;0;0;0;0;22270;19322;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,5,7,72061,ENSMUSG00000021458,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
458,cg10169507,0.0000409,0.00000391,10.46122167,3.90E-22,gain,yes,-0.0000247,0.00000664,-3.725666472,0.000231426,neg,ns,-0.003165875,0.001945331,-1.62742241,0.104663343,neg,ns,0.980205399,0.000118143,0.0000669,1.765975443,0.078384224,pos,ns,0.922985885,Slc25a13,Slc25a13_Exon,6,6042833,6042882,6042833,6042834,50,+,CGGGCAGCCACCTGTAATCTCGTCTTGATAACATCAGCAGGGGTCACTAA,"Exon (Slc25a13-201/Slc25a13, exon 16 of 18)",6,6041218,6217118,175901,2,Slc25a13-201,174236,Slc25a13-201;Slc25a13-203,Slc25a13;Slc25a13,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,3,50799,ENSMUSG00000015112,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
272,cg15273822,0.0000334,0.00001,3.329996486,0.000973318,gain,ns,0.0000635,0.000017,3.724481752,0.000232469,pos,ns,0.017277433,0.004994949,3.45898067,0.000618129,pos,ns,3.208920978,-0.000195644,0.000171776,-1.138949208,0.255603694,neg,ns,0.214773419,Npas4,Npas4_threeUTR,19,4984599,4984648,4984599,4984600,50,-,CGGCAGAGTCCATCGGAATTGAAATCCCGTTACTGGTGTGTAGAGAATTC,3' UTR,19,4984355,4989971,5617,2,Npas4-202,5323,Npas4-202;Npas4-201;Npas4-203,Npas4;Npas4;Npas4,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,14,16,225872,ENSMUSG00000045903,conserved gene and region,19,4984402,4984672,271,*,271,24,0.63099631,0.889740082,0.088560886,2.74E-17,CpGisland,TRUE,U13,Hc-P
9485,cg10718624,-0.0000513,0.000019,-2.700593778,0.007301977,loss,ns,0.000120276,0.0000323,3.723431013,0.000233397,pos,ns,0.01017094,0.009463548,1.074749166,0.283322842,pos,ns,0.547718411,-0.00015878,0.000325451,-0.487875865,0.625982641,neg,ns,0.667992633,Zbtb16,Zbtb16_Intergenic_upstream,9,48866785,48866834,48866833,48866834,50,-,CAAACCCTCCTGCTGGAAAAGCAACCTGCTGGTAGACTGTGATTATACCG,Distal Intergenic,9,48656917,48836222,179306,2,Zbtb16-202,-30612,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,37,235320,ENSMUSG00000066687,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25822,cg23712728,0.0000641,0.000014,4.573486261,0.00000694,gain,ns,0.0000887,0.0000238,3.722716844,0.00023403,pos,ns,0.031340648,0.006977466,4.491694478,0.00000998,pos,ns,5.000728705,-0.000403478,0.000239954,-1.681478812,0.093677046,neg,ns,0.269381598,Uncx,Uncx_Intergenic_downstream,5,139580506,139580555,139580554,139580555,50,-,TCCACTAAAATCAACACAATAATTGAAATATTTTCAAGCTGATTACACCG,Distal Intergenic,5,139543898,139545268,1371,1,Uncx-202,36657,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,59,88,22255,ENSMUSG00000029546,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
18005,cg23185247,0.0000157,0.00000674,2.329715665,0.020463091,gain,ns,0.0000426,0.0000114,3.720269347,0.000236211,pos,ns,0.007458286,0.003353941,2.223738296,0.026886419,pos,ns,1.570467035,-0.000177162,0.000115342,-1.535975332,0.125564412,neg,ns,0.869738362,Arx,Arx_Intergenic_downstream,X,93301582,93301631,93301582,93301583,50,+,CGGAAATCTTCGTAAAAGCCTGAATCATACTTCTACAAGCAGCAATTTTG,Distal Intergenic,20,93286510,93298062,11553,1,Arx-202,15072,Arx-201;Arx-202;Pola1-201,Arx;Arx;Pola1,0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,32,11878,ENSMUSG00000035277,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25823,cg22748772,-0.0000233,0.0000133,-1.7615983,0.079122888,loss,ns,0.0000838,0.0000225,3.720102805,0.00023636,pos,ns,0.01335244,0.006595827,2.024376744,0.043788573,pos,ns,1.358639211,-0.000246537,0.00022683,-1.086881506,0.277933549,neg,ns,0.188321947,Uncx,Uncx_Intergenic_downstream,5,139580594,139580643,139580594,139580595,50,+,CGGTTGCTAGGGGGAGTAAATCATCTTGCATTATTTGATTTTTGTTATAG,Distal Intergenic,5,139543898,139545268,1371,1,Uncx-202,36696,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,59,88,22255,ENSMUSG00000029546,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
17043,cg14876894,0.0000196,0.00000954,2.052852527,0.040925963,gain,ns,0.0000603,0.0000162,3.719132719,0.00023723,pos,ns,0.016244006,0.004747555,3.421552137,0.000706179,pos,ns,3.151085365,-0.000265869,0.000163268,-1.628419675,0.104451736,neg,ns,0.884644838,Gm28877,Gm28877_Intergenic_upstream,9,88069493,88069542,88069541,88069542,50,-,ATAACCCACAAAAATTTTCAAATTAAAAAGGCATATTTAGAGGCCCCCCG,Distal Intergenic,9,88039089,88039692,604,2,Gm28877-201,-29850,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,7,102639108,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26558,cg20288000,0.0000628,0.0000119,5.294219303,0.000000227,gain,yes,-0.0000749,0.0000201,-3.718539784,0.000237764,neg,ns,-0.007372207,0.005900798,-1.249357646,0.212476784,neg,ns,0.672688515,0.000311149,0.000202928,1.533297144,0.126222547,pos,ns,0.869220516,Casz1,Casz1_Intron,4,148919349,148919398,148919349,148919350,50,-,CGGGAGTGACTCGGGTGTAATATAACCCTTTATGCGATGTGGGAATGTTT,"Intron (Casz1-201/Casz1, intron 4 of 15)",4,148804429,148945129,140701,1,Casz1-201,114920,Casz1-201;Casz1-202;Casz1-206,Casz1;Casz1;Casz1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,94,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4950,cg15381220,0.0000293,0.00000463,6.34431994,7.91E-10,gain,yes,-0.0000292,0.00000786,-3.71572387,0.000240313,neg,ns,-0.001407811,0.0023024,-0.611453459,0.541347547,neg,ns,0.266523826,-0.0000587,0.0000792,-0.74101993,0.459242294,neg,ns,0.853451579,Ass1,Ass1_Intron,2,31516733,31516782,31516781,31516782,50,+,GACTTGAAAGCCCTTGAGTGACAGCGTCACAGGGACCAGCGAGGAAGCCG,"Intron (Ass1-201/Ass1, intron 14 of 15)",2,31470207,31520672,50466,1,Ass1-201,46526,Ass1-201;Ass1-204;Ass1-203,Ass1;Ass1;Ass1,0;0;-1708,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,9,11898,ENSMUSG00000076441,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13092,cg23688904,0.0000423,0.0000165,2.561200781,0.010904182,gain,ns,-0.00010413,0.000028,-3.715118482,0.000240864,neg,ns,0.047388482,0.008211485,5.771000344,1.91E-08,pos,ns,7.718864572,-0.002370139,0.000282392,-8.393073528,1.71E-15,neg,yes,0.568492395,Kdm6b,Kdm6b_Exon,11,69406452,69406501,69406500,69406501,50,-,GGGGGACGGGTGGCAGGCAGGCAGCCATGGCTCTCTGCTCCTGGGGGGCG,"Exon (Kdm6b-201/Kdm6b, exon 10 of 23)",11,69398508,69413675,15168,2,Kdm6b-201,7174,Kdm6b-201;Kdm6b-202,Kdm6b;Kdm6b,0;-2237,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,8,216850,ENSMUSG00000018476,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12164,cg00471663,0.000113709,0.00000851,13.36934299,1.68E-32,gain,yes,-0.0000537,0.0000144,-3.714696942,0.000241248,neg,ns,-0.012051963,0.004233123,-2.847061785,0.004706937,neg,ns,2.327261587,0.000370279,0.000145577,2.543529726,0.011459325,pos,ns,0.732130279,Map2k5,Map2k5_Intron,9,63182048,63182097,63182048,63182049,50,+,CGGGGGCCCTTCATAGACAATTAGCTGCTCCCTGTGAATGCTGAATAAAC,"Intron (Map2k5-201/Map2k5, intron 21 of 21)",9,63163768,63377902,214135,2,Map2k5-201,195805,Map2k5-201,Map2k5,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,34,37,23938,ENSMUSG00000058444,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25595,cg03509905,0.000000809,0.0000044,0.184038743,0.854103387,gain,ns,-0.0000277,0.00000747,-3.714613195,0.000241325,neg,ns,-0.004058672,0.002187685,-1.855235671,0.064511729,neg,ns,1.190361315,-0.00000458,0.0000752,-0.060871556,0.951500727,neg,ns,0.855426698,Srrt,Srrt_threeUTR,5,137301624,137301673,137301624,137301625,50,-,CGGGTGTAGTTCCCAGTTCTGGCTCTTTTCAAGGAGGAGGAGCAGAAAGA,3' UTR,5,137295704,137307674,11971,2,Srrt-201,6001,Srrt-201;Srrt-212;Srrt-209;Srrt-211;Srrt-202;Srrt-216;Srrt-205;Srrt-206;Srrt-208;Srrt-217;Srrt-207;Srrt-213;Srrt-215;Srrt-204;Srrt-214;Srrt-203;Srrt-218;Srrt-210,Srrt;Srrt;Srrt;Srrt;Srrt;Srrt;Srrt;Srrt;Srrt;Srrt;Srrt;Srrt;Srrt;Srrt;Srrt;Srrt;Srrt;Srrt,0;0;0;0;-1979;-4199;-4690;-4407;-4771;-4057;-3077;-1615;-1306;-1738;0;-893;0;5967,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,2,83701,ENSMUSG00000037364,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17051,cg20350671,0.00000336,0.0000129,0.260900351,0.794342586,gain,ns,0.0000812,0.0000219,3.713228582,0.000242593,pos,ns,0.016869021,0.006404175,2.634066119,0.008860355,pos,ns,2.052548865,-0.0000465,0.000220239,-0.210938283,0.833074022,neg,ns,0.561795893,Il1rapl1,Il1rapl1_fiveUTR,X,88115557,88115606,88115605,88115606,50,-,CGGGATGCAGCCATAAGAAAGAATCCTATGTATATTTCACAAGTATCCCG,Promoter (<=1kb),20,86740870,88115645,1374776,2,Il1rapl1-203,39,Il1rapl1-203;Il1rapl1-202,Il1rapl1;Il1rapl1,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,18,331461,ENSMUSG00000052372,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2135,cg00922630,0.000000327,0.00000381,0.085989245,0.931530478,gain,ns,0.000024,0.00000647,3.712974259,0.000242826,pos,ns,0.006087461,0.001895553,3.211443821,0.001459371,pos,ns,2.835834272,-0.000053,0.0000652,-0.812353642,0.417212117,neg,ns,0.928403411,Bhlhe22,Bhlhe22_Intergenic_downstream,3,18058508,18058557,18058508,18058509,50,+,CGATGTCTAATATTATGTTAATTTGAAAACAACTGTGTATGAAAACTGTC,Distal Intergenic,3,18054174,18057517,3344,1,Bhlhe22-201,4334,Bhlhe22-201,Bhlhe22,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,22,59058,ENSMUSG00000025128,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
1072,cg15718283,0.0000143,0.0000158,0.908181629,0.364487735,gain,ns,0.0000996,0.0000268,3.711376166,0.000244299,pos,ns,0.014440974,0.007858783,1.837558687,0.067084393,pos,ns,1.173378507,0.0000603,0.000270263,0.223003097,0.823679964,pos,ns,0.322894207,Gm14515,Gm14515_Intergenic_upstream,X,11492163,11492212,11492163,11492164,50,-,CGCTGGTCATATCCGATCCTGCCACATGAAAAGAAGCATTACACCAGCCT,Distal Intergenic,20,11601354,11601569,216,1,Gm14515-201,-109191,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,21,28,,NA,mapped to different genes,X,11492065,11492273,209,*,209,19,0.622009569,0.945476191,0.090909091,5.36E-14,CpGisland,TRUE,NA,NRS
19194,cg08097199,0.0000202,0.00000927,2.183649511,0.029737417,gain,ns,-0.0000584,0.0000157,-3.710595505,0.000245021,neg,ns,0.00621192,0.004611966,1.346913683,0.178991839,pos,ns,0.74716677,-0.000325174,0.000158605,-2.050213254,0.041184408,neg,ns,0.670093638,Nr1d1,Nr1d1_Exon,11,98768284,98768333,98768332,98768333,50,-,TCCGGCAGCTTGAGCAGCAGCTTGGTGAAGCGGGAAGTCTCCAAGGGCCG,"Exon (Thra-201/Thra, exon 10 of 10)",11,98767932,98775333,7402,2,Nr1d1-201,7000,Nr1d1-201;Nr1d1-202;Thra-201;Thra-202;Thra-203,Nr1d1;Nr1d1;Thra;Thra;Thra,0;2093;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,9,217166,ENSMUSG00000020889,mapped to different genes,11,98768145,98768493,349,*,349,27,0.633237822,0.781732205,0.077363897,8.51E-18,CpGisland,TRUE,U6,En-Sp
4562,cg07014363,0.0000339,0.00000661,5.12421938,0.000000527,gain,yes,0.0000417,0.0000112,3.710333454,0.000245264,pos,ns,0.003244493,0.003288736,0.986547094,0.324634082,pos,ns,0.488605887,-0.000107104,0.000113099,-0.946989178,0.344381875,neg,ns,0.584858125,Ntm,Ntm_Intron,9,29771541,29771590,29771589,29771590,50,+,GAAATAGACTTTTCCCTCATCCATCATAAGTCAGCGTGACAGGGCTGTCG,"Intron (Ntm-201/Ntm, intron 1 of 7)",9,28994750,29963129,968380,2,Ntm-201,191539,Ntm-201;Ntm-204;Ntm-210;Ntm-207,Ntm;Ntm;Ntm;Ntm,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,27,32,235106,ENSMUSG00000059974,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15680,cg21836062,0.0000243,0.00000978,2.487093376,0.01340489,gain,ns,0.0000616,0.0000166,3.71014184,0.000245442,pos,ns,0.010261431,0.00486575,2.108910306,0.035754137,pos,ns,1.446673698,-0.0000669,0.000167333,-0.399935911,0.689479154,neg,ns,0.546039402,Gm14741,Gm14741_Intergenic_upstream,X,82814738,82814787,82814738,82814739,50,-,CGTATCAGATAGTCAGAGTGGTTACCACACCGACGTTGTAGCAGCTGCAT,Distal Intergenic,20,82757430,82758438,1009,2,Gm14741-201,-56349,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,11,100415954,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22337,cg03934886,-0.00000857,0.00000247,-3.474507361,0.000584707,loss,ns,-0.0000155,0.00000419,-3.708312089,0.000247145,neg,ns,-0.000000296,0.001228077,-0.000241271,0.999807649,neg,ns,0.0000835,-0.0000766,0.0000422,-1.814495085,0.070568024,neg,ns,0.947150555,Brpf1,Brpf1_Exon,6,113317660,113317709,113317660,113317661,50,+,CGGTCCCTCTGTCTGAGGTAACCGAATTGGACGAAGTAAGAATCCCTTCC,"Exon (Brpf1-204/Brpf1, exon 6 of 14)",6,113307137,113324857,17721,1,Brpf1-204,10523,Brpf1-204;Brpf1-209;Brpf1-203;Brpf1-202;Brpf1-201;Brpf1-210;Brpf1-208;Brpf1-205;Brpf1-207;Brpf1-206,Brpf1;Brpf1;Brpf1;Brpf1;Brpf1;Brpf1;Brpf1;Brpf1;Brpf1;Brpf1,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,16,78783,ENSMUSG00000001632,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8252,cg16937191,-0.0000962,0.0000147,-6.552193642,2.36E-10,loss,yes,0.0000925,0.000025,3.70830281,0.000247154,pos,ns,0.048100712,0.007310876,6.579336604,2.01E-10,pos,ns,9.696516519,-0.001343688,0.00025142,-5.344385212,0.000000176,neg,yes,0.69016837,Ebf1,Ebf1_Intron,11,44904165,44904214,44904213,44904214,50,+,CAACACCCTGAAATGAAATTTAAACCAATTAATCTGTTAGATTTTTATCG,"Intron (Ebf1-203/Ebf1, intron 8 of 15)",11,44617317,45004995,387679,1,Ebf1-203,286848,Ebf1-203;Ebf1-202;Ebf1-201,Ebf1;Ebf1;Ebf1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,80,13591,ENSMUSG00000057098,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9030,cg03927796,-0.000103971,0.0000104,-9.991627551,1.46E-20,loss,yes,0.0000655,0.0000177,3.705755957,0.000249544,pos,ns,0.008080911,0.005179075,1.560300019,0.119709265,pos,ns,0.921872237,-0.000047,0.000178108,-0.263773618,0.792129619,neg,ns,0.490182967,Wbp1l,Wbp1l_threeUTR,19,46653964,46654013,46654012,46654013,50,-,GGGTTTTTGCCAAACTATTTACTACCTCCTTATGAGGAAGTGGTGAACCG,3' UTR,19,46599084,46657389,58306,1,Wbp1l-204,54880,Wbp1l-204;Wbp1l-203;Wbp1l-201;Wbp1l-205;Wbp1l-202,Wbp1l;Wbp1l;Wbp1l;Wbp1l;Wbp1l,0;0;0;30563;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,2,226178,ENSMUSG00000047731,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6425,cg09890767,-0.0000138,0.00000763,-1.81189498,0.070969944,loss,ns,0.000048,0.000013,3.704841654,0.000250407,pos,ns,0.007044409,0.003797853,1.854840011,0.064568404,pos,ns,1.189979945,-0.0000698,0.000130608,-0.534528236,0.593359269,neg,ns,0.924702148,Tmem218,Tmem218_Intergenic_upstream,9,37197144,37197193,37197144,37197145,50,-,CGCTAAATATTTTTATTAGCAGCAAATTTGCTGCTTGCTGGAACTAATTT,Distal Intergenic,9,37208223,37224700,16478,1,Tmem218-201,-11079,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,5,66279,ENSMUSG00000032121,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4420,cg24120604,0.000149524,0.0000173,8.650027726,2.83E-16,gain,yes,-0.000108795,0.0000294,-3.704735558,0.000250507,neg,ns,0.060219803,0.008603412,6.99952555,1.59E-11,pos,yes,10.79735078,-0.001737649,0.000295871,-5.873001341,0.000000011,neg,yes,0.388523572,Snd1,Snd1_Intron,6,28864782,28864831,28864830,28864831,50,+,TTGCCTGCACCAAAGGAACAGATTGCGTCAGTTTGTAAACTGTGTTAGCG,"Intron (Snd1-203/Snd1, intron 15 of 16)",6,28480348,28877723,397376,1,Snd1-203,384434,Snd1-203;Snd1-201;Snd1-206;Snd1-210;Snd1-209;Snd1-205,Snd1;Snd1;Snd1;Snd1;Snd1;Snd1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,9,56463,ENSMUSG00000001424,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26835,cg27632562,0.00000109,0.00000273,0.400477258,0.689080879,gain,ns,0.0000172,0.00000464,3.70447176,0.000250757,pos,ns,0.003580551,0.001359823,2.633100445,0.008885023,pos,ns,2.051341428,-0.0000519,0.0000468,-1.109313263,0.268154875,neg,ns,0.932148178,Tm9sf4,Tm9sf4_Exon,2,153191962,153192011,153191962,153191963,50,+,CGGAAGGACATTGCCAACTACAACAAGGAGGATGACATTGTACGAGGTCT,"Exon (Tm9sf4-203/Tm9sf4, exon 9 of 17)",2,153161303,153204862,43560,1,Tm9sf4-203,30659,Tm9sf4-203;Tm9sf4-201;Tm9sf4-205;Tm9sf4-208;Tm9sf4-204;Tm9sf4-206;Tm9sf4-202;Tm9sf4-207,Tm9sf4;Tm9sf4;Tm9sf4;Tm9sf4;Tm9sf4;Tm9sf4;Tm9sf4;Tm9sf4,0;0;30421;0;0;0;-2330;-3519,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,99237,ENSMUSG00000068040,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24533,cg22526531,0.000035,0.00000425,8.221324626,5.57E-15,gain,yes,-0.0000268,0.00000723,-3.704213602,0.000251001,neg,ns,-0.00654741,0.002117022,-3.092745935,0.00216355,neg,ns,2.664833111,0.000206905,0.0000728,2.841935767,0.004781297,pos,ns,0.822267377,AU040320,AU040320_Exon,4,126842578,126842627,126842626,126842627,50,-,TGGGGGTGCTGGATTCCGACATCATTGTGCAAAAGATTCAGCCGTACACG,"Exon (AU040320-203/AU040320, exon 16 of 24)",4,126753555,126870070,116516,1,AU040320-203,89023,AU040320-203;AU040320-201;AU040320-202;AU040320-211,AU040320;AU040320;AU040320;AU040320,0;0;0;7299,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,100317,ENSMUSG00000028830,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16707,cg18804410,0.0000248,0.0000179,1.381059528,0.168255396,gain,ns,0.000112812,0.0000305,3.704195776,0.000251018,pos,ns,0.02146242,0.008922305,2.405479176,0.016736803,pos,ns,1.776327507,-0.000130751,0.000306837,-0.426125163,0.670312368,neg,ns,0.246714849,Gpatch2l,Gpatch2l_Intergenic_upstream,12,86214468,86214517,86214468,86214469,50,+,CGCTTAAGTTGCCGGAGAGAATTACTTAACCCTGACCCGTGTATTAGGGG,Distal Intergenic,12,86241858,86291784,49927,1,Gpatch2l-204,-27341,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,13,17,70373,ENSMUSG00000021254,conserved gene but different region,12,86214265,86214574,310,*,310,23,0.54516129,1.024719747,0.074193548,7.83E-15,CpGisland,TRUE,U13,Hc-P
22352,cg06188748,0.000113951,0.0000143,7.958566767,3.31E-14,gain,yes,-0.0000901,0.0000243,-3.703425803,0.000251749,neg,ns,0.024521698,0.007126254,3.441036392,0.000658977,pos,ns,3.181129884,-0.000747248,0.000245071,-3.049105211,0.002493127,neg,ns,0.400572274,Btbd10,Btbd10_Intron,7,113347504,113347553,113347504,113347505,50,+,CGCAGGAGTTGAGGGCTTAGAGATATGTAGATATGTTGCCAAATGCCATC,"Intron (Btbd10-201/Btbd10, intron 4 of 10)",7,113315626,113369339,53714,2,Btbd10-201,21786,Btbd10-202;Btbd10-201;Btbd10-203;Btbd10-205,Btbd10;Btbd10;Btbd10;Btbd10,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,6,68815,ENSMUSG00000038187,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6728,cg05786939,0.0000677,0.00000903,7.494914218,7.00E-13,gain,yes,-0.0000568,0.0000153,-3.702277052,0.000252843,neg,ns,0.019787932,0.004495175,4.40203802,0.0000148,pos,ns,4.830448434,-0.000970828,0.000154589,-6.280072261,1.14E-09,neg,yes,0.868434619,Gsk3b,Gsk3b_Exon,16,38191544,38191593,38191544,38191545,50,-,CGAGGAGAACCCAATGTTTCGTATATCTGTTCTCGGTACTATAGGGCACC,"Exon (Gsk3b-201/Gsk3b, exon 6 of 11)",16,38089001,38246084,157084,1,Gsk3b-201,102543,Gsk3b-201;Gsk3b-202;Gsk3b-204;Gsk3b-203,Gsk3b;Gsk3b;Gsk3b;Gsk3b,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,11,56637,ENSMUSG00000022812,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7689,cg04510365,0.0000345,0.00000718,4.803138026,0.00000244,gain,ns,-0.0000451,0.0000122,-3.702195365,0.000252921,neg,ns,-0.010026086,0.003572737,-2.806276029,0.005328863,neg,ns,2.273365479,0.000147357,0.000122866,1.199328364,0.231316173,pos,ns,0.829366641,Tmem8b,Tmem8b_fiveUTR,4,43674569,43674618,43674569,43674570,50,+,CGTCAGCAGCCCCTTACCTGGGGACTGGTTCTTGGCTGCCCACCTTCCCC,5' UTR,4,43668971,43692668,23698,1,Tmem8b-202,5598,Tmem8b-202;Tmem8b-209;Tmem8b-201;Tmem8b-203;Tmem8b-204;Tmem8b-206;Tmem8b-207;Tmem8b-205,Tmem8b;Tmem8b;Tmem8b;Tmem8b;Tmem8b;Tmem8b;Tmem8b;Tmem8b,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,1,242409,ENSMUSG00000078716,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12236,cg26304862,0.0000209,0.00000353,5.905647609,9.23E-09,gain,yes,-0.0000222,0.000006,-3.701596357,0.000253494,neg,ns,-0.006868902,0.001757304,-3.908772342,0.000113966,neg,ns,3.943223992,0.000147039,0.0000604,2.433074556,0.015536371,pos,ns,0.944023188,Ptch1,Ptch1_Intron,13,63554891,63554940,63554891,63554892,50,-,CGGCCCTGAATGGCAAGATTTTTCCACGTTGCTGGCTACATTCAGGCCTC,"Intron (Ptch1-201/Ptch1, intron 2 of 22)",13,63508328,63565735,57408,2,Ptch1-201,10795,Ptch1-201;Ptch1-204;Ptch1-206;Ptch1-202;Ptch1-207;Ptch1-203;Ptch1-205,Ptch1;Ptch1;Ptch1;Ptch1;Ptch1;Ptch1;Ptch1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,36,19206,ENSMUSG00000021466,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6093,cg09400970,-0.000083,0.0000115,-7.19673682,4.68E-12,loss,yes,0.0000726,0.0000196,3.701569817,0.000253519,pos,ns,-0.00321192,0.005743095,-0.559266405,0.576383732,neg,ns,0.239288285,0.000192304,0.000197505,0.973669716,0.330979694,pos,ns,0.547222135,Rpl17-ps9,Rpl17-ps9_Intergenic_upstream,7,36017298,36017347,36017298,36017299,50,+,CGTGTCCCATGACCAGCCGTGGCAGGGTTTTTGTTCCCATGAATGAATGG,Distal Intergenic,7,36118274,36118828,555,1,Rpl17-ps9-201,-100927,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,14,22,100043872,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16306,cg08229531,-0.00000664,0.0000069,-0.962211912,0.336693103,loss,ns,0.0000434,0.0000117,3.699795882,0.000255222,pos,ns,0.009914606,0.003436199,2.885340936,0.004184066,pos,ns,2.378401483,-0.000202142,0.000118171,-1.710595079,0.088156327,neg,ns,0.926191082,Mrm1,Mrm1_Intergenic_downstream,11,84726147,84726196,84726147,84726148,50,-,CGGACCTTGACATTATTAATAGTCCTATTCATTAAGTATTACTCTTGTAG,Distal Intergenic,11,84814743,84815390,648,2,Mrm1-203,89243,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,37,42,217038,ENSMUSG00000018405,conserved gene and region,11,84726113,84726148,36,*,36,6,0.722222222,1.411764706,0.166666667,0.00000387,CpGisland,TRUE,U11,Tr-P
26528,cg23298936,0.0000108,0.0000185,0.584848275,0.559075162,gain,ns,0.000116432,0.0000315,3.699535496,0.000255473,pos,ns,0.028057299,0.009220238,3.043012583,0.002542645,pos,ns,2.594714331,-0.000752733,0.000317083,-2.373929319,0.018208877,neg,ns,0.556771227,Casz1,Casz1_Intron,4,148882443,148882492,148882443,148882444,50,-,CGAAGCTAAAATATAAATGACTCCCTGTCAAGAAGCAGCTTTTGTTTGTT,"Intron (Casz1-201/Casz1, intron 2 of 15)",4,148804429,148945129,140701,1,Casz1-201,78014,Casz1-201;Casz1-202,Casz1;Casz1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,94,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18281,cg25266160,-0.0000227,0.00000748,-3.032205496,0.002632709,loss,ns,0.000047,0.0000127,3.696992489,0.000257934,pos,ns,0.006763794,0.003721876,1.817307931,0.070135333,pos,ns,1.154063135,-0.00022074,0.000127995,-1.724600189,0.085596324,neg,ns,0.864392652,Gm48316,Gm48316_Intergenic_upstream,13,94680473,94680522,94680521,94680522,50,+,GGAGACGTTCTCTATTACAGAGATAAATAGCTTTGGGCTAACTGTCAACG,Distal Intergenic,13,94752270,94752593,324,1,Gm48316-201,-71748,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,36,42,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27564,cg22102759,0.0000182,0.000012,1.520060198,0.129515102,gain,ns,0.0000751,0.0000203,3.696162431,0.000258743,pos,ns,0.026590278,0.005954546,4.465542191,0.0000112,pos,ns,4.950775918,-0.000551192,0.000204776,-2.691675582,0.007495437,neg,ns,0.641473187,Mid1,Mid1_Exon,X,169927624,169927673,169927624,169927625,50,+,CGATCATCAGGTGGCAGCTTTGAGTGAGCGCTATGACAAATTGAAGGTTA,"Exon (Mid1-204/Mid1, exon 2 of 10)",20,169685199,169990795,305597,1,Mid1-206,242425,Mid1-206;Mid1-204;Mid1-201;Mid1-205;Mid1-202;Mid1-214;Mid1-215;Mid1-211,Mid1;Mid1;Mid1;Mid1;Mid1;Mid1;Mid1;Mid1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,8,17318,ENSMUSG00000035299,conserved gene and region,X,169927461,169927683,223,*,223,13,0.533632287,0.835928489,0.058295964,0.000000236,CpGisland,TRUE,NA,NRS
21555,cg25894239,-0.00000101,0.00000202,-0.501634027,0.61628104,loss,ns,-0.0000127,0.00000343,-3.694797061,0.000260078,neg,ns,0.001967332,0.001005436,1.956694493,0.051280839,pos,ns,1.290044876,-0.0000115,0.0000346,-0.333170254,0.739230989,neg,ns,0.956413353,Ppp1r12a,Ppp1r12a_threeUTR,10,108274141,108274190,108274141,108274142,50,-,CGAAGAGCTCTAGAAAGAAGAATATCTGAAATGGAAGAAGAGCTCAAAGT,3' UTR,10,108162193,108277351,115159,1,Ppp1r12a-205,111948,Ppp1r12a-205;Ppp1r12a-201;Ppp1r12a-208;Ppp1r12a-202;Ppp1r12a-207;Ppp1r12a-206,Ppp1r12a;Ppp1r12a;Ppp1r12a;Ppp1r12a;Ppp1r12a;Ppp1r12a,0;0;0;0;7044;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,8,17931,ENSMUSG00000019907,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9516,cg01574836,0.00000962,0.00000787,1.222495138,0.222449078,gain,ns,-0.0000494,0.0000134,-3.694606934,0.000260264,neg,ns,0.003362954,0.003916786,0.858600352,0.391224429,pos,ns,0.407574035,-0.000394807,0.000134698,-2.931056201,0.003629269,neg,ns,0.097873112,Malsu1,Malsu1_Exon,6,49075111,49075160,49075111,49075112,50,-,CGATATGATGGTTTCACTTCTGAGGCAAGAAAATGCAAGAGACATTTGTG,"Exon (Malsu1-203/Malsu1, exon 2 of 4)",6,49073795,49086751,12957,1,Malsu1-203,1316,Gm19253-201;Gpnmb-203;Malsu1-203;Malsu1-202;Malsu1-201;Malsu1-205,Gm19253;Gpnmb;Malsu1;Malsu1;Malsu1;Malsu1,3481;38434;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,75593,ENSMUSG00000029815,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20065,cg03707556,0.0000969,0.0000125,7.779084147,1.09E-13,gain,yes,-0.0000781,0.0000212,-3.69429374,0.000260571,neg,ns,0.054208108,0.006196918,8.747591,1.42E-16,pos,yes,15.84851495,-0.002083633,0.000213112,-9.777194682,7.45E-20,neg,yes,0.633956724,Rundc3a,Rundc3a_Exon,11,102402036,102402085,102402084,102402085,50,-,CAGCTGCAAGTCCCTGGCGAGCTTCAAATCCAACGAGTGCCTGGTGAGCG,"Exon (Rundc3a-201/Rundc3a, exon 11 of 11)",11,102393403,102402555,9153,1,Rundc3a-201,8633,Rundc3a-202;Rundc3a-203;Rundc3a-204;Rundc3a-201;Rundc3a-209;Rundc3a-205;Rundc3a-210;Rundc3a-208;Rundc3a-206;Rundc3a-207;Slc25a39-202;Slc25a39-201;Slc25a39-205;Slc25a39-213;Slc25a39-207;Slc25a39-208;Slc25a39-215;Slc25a39-209;Slc25a39-203;Slc25a39-212;Slc25a39-206;Slc25a39-214;Slc25a39-204;Slc25a39-210;Slc25a39-211,Rundc3a;Rundc3a;Rundc3a;Rundc3a;Rundc3a;Rundc3a;Rundc3a;Rundc3a;Rundc3a;Rundc3a;Slc25a39;Slc25a39;Slc25a39;Slc25a39;Slc25a39;Slc25a39;Slc25a39;Slc25a39;Slc25a39;Slc25a39;Slc25a39;Slc25a39;Slc25a39;Slc25a39;Slc25a39,0;0;0;0;0;0;0;0;0;2178;5404;5459;2408;5421;5423;5371;4731;5402;5378;5230;4870;5298;5861;4723;4799,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,Exon,5,6,51799,ENSMUSG00000006575,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21678,cg00688252,0.000238891,0.0000129,18.5040615,5.08E-52,gain,yes,-0.000081,0.0000219,-3.69425106,0.000260613,neg,ns,0.001109056,0.006425525,0.172601661,0.863077179,pos,ns,0.063950367,0.000146321,0.000220973,0.662164408,0.508357806,pos,ns,0.516705594,Zfhx3,Zfhx3_Intron,8,108823041,108823090,108823089,108823090,50,+,TGTTGACATTTTAATGCGAATTATGTCATGTGGTATCCCCTTTGATTTCG,"Intron (Zfhx3-204/Zfhx3, intron 9 of 15)",8,107942644,108961630,1018987,1,Zfhx3-204,880397,Zfhx3-204;Zfhx3-201,Zfhx3;Zfhx3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,114,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
17063,cg17752822,-0.0000292,0.00000509,-5.735771749,2.31E-08,loss,yes,-0.0000319,0.00000865,-3.693523252,0.000261329,neg,ns,-0.003549,0.002532936,-1.401140896,0.162172222,neg,ns,0.790023532,-0.000196863,0.0000871,-2.260000263,0.024514947,neg,ns,0.765607892,Mef2d,Mef2d_Exon,3,88158316,88158365,88158316,88158317,50,-,CGAGGAGTTTGATAAAATGATGCAGAGTTATAGACTGGCCGTGAGTAGTC,"Exon (Mef2d-202/Mef2d, exon 4 of 11)",3,88142372,88172086,29715,1,Mef2d-201,15944,Mef2d-201;Mef2d-204;Mef2d-202;Mef2d-203;Mef2d-206;Mef2d-205,Mef2d;Mef2d;Mef2d;Mef2d;Mef2d;Mef2d,0;0;0;0;15742;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,10,17261,ENSMUSG00000001419,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21974,cg02082809,-0.0000398,0.0000157,-2.531082739,0.011865344,loss,ns,0.0000988,0.0000267,3.693017064,0.000261828,pos,ns,-0.001471586,0.007835136,-0.187818872,0.851141519,neg,ns,0.069998224,0.0000316,0.00026945,0.11719631,0.906780383,pos,ns,0.625168924,Lin7c,Lin7c_Promoter,2,109884372,109884421,109884420,109884421,50,+,AAAAACCAATCTGTGCCCACAAAATTAATCACGGAACACATTTTATGACG,Promoter (6-7kb),2,109890853,109901003,10151,1,Lin7c-201,-6432,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,2,22343,ENSMUSG00000027162,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19839,cg02900540,-0.00000521,0.00000539,-0.966515624,0.334539635,loss,ns,0.0000338,0.00000916,3.692069976,0.000262763,pos,ns,0.007675172,0.002682149,2.86157577,0.004502062,pos,ns,2.346588514,-0.000136504,0.0000922,-1.479896282,0.139916444,neg,ns,0.857754979,Nlgn3,Nlgn3_fiveUTR,X,101302313,101302362,101302361,101302362,50,-,TGTGCCCGAAGTCATGCTGCCGGTCTGGTTCACTGCCAACTTGGATATCG,5' UTR,20,101299168,101325963,26796,1,Nlgn3-202,3145,Med12-204;Med12-203;Med12-201;Med12-202;Med12-208;Med12-206;Nlgn3-202;Nlgn3-203;Nlgn3-206;Nlgn3-201;Nlgn3-205,Med12;Med12;Med12;Med12;Med12;Med12;Nlgn3;Nlgn3;Nlgn3;Nlgn3;Nlgn3,0;0;0;0;0;5744;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,TRUE,FALSE,fiveUTR,2,16,245537,ENSMUSG00000031302,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16894,cg01971426,-0.0000834,0.0000169,-4.938470822,0.00000129,loss,yes,0.000105885,0.0000287,3.69190343,0.000262928,pos,ns,0.008715864,0.008402384,1.037308418,0.300400577,pos,ns,0.522299237,-0.000206417,0.000288957,-0.71435262,0.475546706,neg,ns,0.652470131,N6amt1,N6amt1_Intergenic_upstream,16,87128452,87128501,87128452,87128453,50,-,CGTCACTGCCATTCTGAATCATGCAAATGAGAATGTCATATCCTCTGACT,Distal Intergenic,16,87354185,87368742,14558,1,N6amt1-201,-225733,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,67768,ENSMUSG00000044442,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23866,cg16530054,0.00000202,0.00000657,0.306833733,0.75917593,gain,ns,0.0000412,0.0000112,3.691149297,0.000263676,pos,ns,-0.001938796,0.003270179,-0.59287137,0.553699484,neg,ns,0.256725881,0.0000671,0.000112461,0.596270496,0.551429679,pos,ns,0.807015941,Gm42927,Gm42927_Intron,3,120678521,120678570,120678521,120678522,50,-,CGGGTCTGCTGTAAGGTAGTTTCAGGTTTGGAATTTAGGGTTCCCCAAGG,"Intron (6530403H02Rik-202/6530403H02Rik-202, intron 3 of 11)",3,120735721,120739561,3841,2,Gm42927-201,61040,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,7,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23608,cg14407961,0.0000788,0.0000133,5.947647185,7.33E-09,gain,yes,0.0000831,0.0000225,3.69105626,0.000263768,pos,ns,0.028597609,0.006594977,4.336271224,0.0000196,pos,ns,4.707287654,-0.00062593,0.000226801,-2.759823563,0.006127364,neg,ns,0.202808687,Dll4,Dll4_Promoter,2,119322246,119322295,119322246,119322247,50,+,CGGGCGGGAAGCTGCTGCATTAAATTGTAAAATCGATTTATTGACCGGCA,Promoter (3-4kb),2,119325784,119335962,10179,1,Dll4-201,-3489,Dll4-201,Dll4,0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,8,20,54485,ENSMUSG00000027314,conserved gene and region,2,119322082,119322448,367,*,367,37,0.632152589,1.026301867,0.100817439,1.47E-28,CpGisland,TRUE,U3,Pr-B
22957,cg23141081,0.0000399,0.00000643,6.205950908,1.74E-09,gain,yes,-0.0000403,0.0000109,-3.69043727,0.000264384,neg,ns,-0.006474063,0.00319844,-2.024131069,0.043813991,neg,ns,1.358387186,0.0000907,0.000109994,0.824539525,0.410267041,pos,ns,0.881949862,Pik3c2a,Pik3c2a_Exon,7,116350810,116350859,116350858,116350859,50,+,CTTATCAAGTTGTAGGCCTGACAGCAGAGGTCCACAAACAACTGAAAACG,"Exon (Pik3c2a-201/Pik3c2a, exon 25 of 33)",7,116337265,116443449,106185,2,Pik3c2a-201,92590,Pik3c2a-201;Pik3c2a-206;Pik3c2a-204,Pik3c2a;Pik3c2a;Pik3c2a,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,18704,ENSMUSG00000030660,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8724,cg19175123,0.000130801,0.00000796,16.42452617,4.76E-44,gain,yes,-0.0000499,0.0000135,-3.690413198,0.000264408,neg,ns,0.006771475,0.003963646,1.708395533,0.088563962,pos,ns,1.052742961,-0.0000972,0.000136309,-0.712967102,0.476402444,neg,ns,0.651621266,Fbxw4,Fbxw4_Intron,19,45617025,45617074,45617073,45617074,50,+,GGTCACAATGTGTAAATTCTTTTGACCTGCACCTAATCAAAGATTCACCG,"Intron (Fbxw4-206/Fbxw4, intron 1 of 4)",19,45578254,45631138,52885,2,Fbxw4-206,14064,Fbxw4-206;Fbxw4-201;Fbxw4-208,Fbxw4;Fbxw4;Fbxw4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,14,30838,ENSMUSG00000040913,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24379,cg14518762,0.000182036,0.0000175,10.41675112,5.52E-22,gain,yes,-0.00010956,0.0000297,-3.690345726,0.000264475,neg,ns,-0.002157067,0.008697627,-0.248006382,0.804293665,neg,ns,0.094585352,0.0000117,0.000299111,0.039205281,0.96875196,pos,ns,0.534651437,Chd4,Chd4_Promoter,6,125089956,125090005,125090004,125090005,50,-,GGGCGGTCACCGCGGAATGTCTCTTGTGGGTGGCTATTATGGGATGGCCG,Promoter (6-7kb),6,125095981,125130591,34611,1,Chd4-201,-6025,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,4,15,107932,ENSMUSG00000063870,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
3225,cg20665157.2,0.000423743,0.000016,26.54005294,8.61E-82,gain,yes,-0.000100085,0.0000271,-3.689848667,0.00026497,neg,ns,0.038092014,0.007946536,4.793536779,0.00000255,pos,ns,5.593979053,-0.000391596,0.000273281,-1.432945178,0.15288119,neg,ns,0.28242304,Cadps2,Cadps2_Intron,6,23273232,23273281,23273280,23273281,50,+,TGTCAATAGAAATTGACAAACCTCATCTCCTAAATAGTGCAGCTGAGCCG,"Intron (Cadps2-213/Cadps2, intron 28 of 29)",6,23262773,23839137,576365,2,Cadps2-213,565856,Cadps2-213;Cadps2-205;Cadps2-212;Cadps2-201;Cadps2-209;Cadps2-206;Cadps2-211;Cadps2-207;Cadps2-202;Cadps2-210,Cadps2;Cadps2;Cadps2;Cadps2;Cadps2;Cadps2;Cadps2;Cadps2;Cadps2;Cadps2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,15,320405,ENSMUSG00000017978,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21603,cg27352496,0.0000185,0.00000392,4.703827116,0.00000385,gain,ns,-0.0000246,0.00000667,-3.689745732,0.000265073,neg,ns,-0.00596807,0.001953027,-3.05580565,0.002439693,neg,ns,2.612664806,0.000114585,0.0000672,1.706031854,0.089003717,pos,ns,0.834016547,Usp19,Usp19_Exon,9,108501825,108501874,108501825,108501826,50,+,CGTATTCTGTTGCAGGGACTAGGCCCTGGCCAGGCCCCCGAGGTGGCCCC,"Exon (Usp19-203/Usp19, exon 26 of 26)",9,108490840,108502337,11498,1,Usp19-203,10985,Usp19-201;Usp19-203;Usp19-202;Usp19-210;Usp19-204;Usp19-212;Usp19-216;Usp19-213;Usp19-215;Usp19-209;Usp19-211,Usp19;Usp19;Usp19;Usp19;Usp19;Usp19;Usp19;Usp19;Usp19;Usp19;Usp19,0;0;0;0;0;0;5478;4836;4736;3122;1675,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,71472,ENSMUSG00000006676,conserved gene but different region,9,108501783,108501951,169,*,169,11,0.698224852,0.544044484,0.065088757,0.000000917,CpGisland,TRUE,U10,Tr-S
3370,cg14024823,0.0000167,0.00000992,1.685359638,0.092925492,gain,ns,0.0000622,0.0000169,3.689031185,0.000265787,pos,ns,0.001349784,0.004937573,0.273369956,0.78475088,pos,ns,0.105268188,0.0000686,0.000169803,0.404231122,0.686321507,pos,ns,0.798614704,Apba1,Apba1_Exon,19,23893920,23893969,23893920,23893921,50,+,CGCCTTACACCCCCGACGAGCCCAAAGAGCCCATCTGGGTCATGCGCCAG,"Exon (Apba1-201/Apba1, exon 2 of 13)",19,23758887,23949596,190710,1,Apba1-201,135033,Apba1-201,Apba1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,319924,ENSMUSG00000024897,conserved gene and region,19,23893916,23894039,124,*,124,10,0.612903226,0.859320859,0.080645161,0.000000493,CpGisland,TRUE,U13,Hc-P
12452,cg06070696,-0.0000417,0.0000174,-2.393778875,0.017270004,loss,ns,-0.000109024,0.0000296,-3.687304577,0.000267519,neg,ns,-0.013015248,0.008662233,-1.502528153,0.133978722,neg,ns,0.87296417,-0.000189189,0.000297893,-0.635091082,0.525837486,neg,ns,0.688299871,Tll1,Tll1_Intergenic_upstream,8,64362519,64362568,64362567,64362568,50,-,TCAATTGTAGGAATCCTGGCCTTAATCATTTGTGTCAACACACACTTCCG,Distal Intergenic,8,64203529,64206271,2743,2,Tll1-204,-156297,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,21892,ENSMUSG00000053626,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21615,cg16766999,0.0000335,0.00000994,3.373960717,0.000835071,gain,ns,0.0000623,0.0000169,3.6865454,0.000268284,pos,ns,0.010070546,0.00494842,2.035103216,0.042690918,pos,ns,1.369664511,-0.0000483,0.000170176,-0.283976925,0.776617641,neg,ns,0.487525567,Dalrd3,Dalrd3_Exon,9,108568784,108568833,108568832,108568833,50,-,TTTGGAATGACACGATCACTCCCGTTGAGTGGGCACCCGAGAAGCCATCG,Promoter (1-2kb),9,108569886,108572774,2889,1,Dalrd3-201,-1102,Dalrd3-201;Dalrd3-209;Dalrd3-206;Dalrd3-205;Dalrd3-208;Dalrd3-203;Dalrd3-207;Dalrd3-202;Dalrd3-204;Impdh2-201;Impdh2-207;Impdh2-208;Impdh2-203;Impdh2-206;Ndufaf3-201;Ndufaf3-203;Ndufaf3-202;Ndufaf3-204;Wdr6-201,Dalrd3;Dalrd3;Dalrd3;Dalrd3;Dalrd3;Dalrd3;Dalrd3;Dalrd3;Dalrd3;Impdh2;Impdh2;Impdh2;Impdh2;Impdh2;Ndufaf3;Ndufaf3;Ndufaf3;Ndufaf3;Wdr6,-1053;-1077;-1081;-1863;-2174;-2404;-2679;-3434;-3559;8498;5649;5515;3584;3580;-1350;-2067;-1874;-1854;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,67789,ENSMUSG00000019039,mapped to different genes,9,108568796,108569003,208,*,208,12,0.548076923,0.78,0.057692308,0.000000884,CpGisland,TRUE,NA,NRS
18487,cg18508910,-0.00000307,0.00000193,-1.595101011,0.111708597,loss,ns,-0.0000121,0.00000327,-3.685799531,0.000269038,neg,ns,0.001436459,0.000958721,1.498307634,0.135070911,pos,ns,0.869438172,-0.0000247,0.000033,-0.748550993,0.454695427,neg,ns,0.94867605,Ube2z,Ube2z_Exon,11,96060967,96061016,96060967,96060968,50,-,CGGTAGAAGTTGGGGTTAAACCTCACTGTGTTATTGCCCGTTGTCATCAG,"Exon (Ube2z-201/Ube2z, exon 3 of 7)",11,96047432,96065388,17957,2,Ube2z-201,4372,Ube2z-201,Ube2z,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,6,268470,ENSMUSG00000014349,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14905,cg05506474,-0.0000946,0.00000766,-12.36038296,8.36E-29,loss,yes,-0.0000479,0.000013,-3.685032217,0.000269816,neg,ns,0.024578229,0.003810931,6.449403063,4.31E-10,pos,ns,9.36592635,-0.000807714,0.000131058,-6.163045318,2.22E-09,neg,yes,0.78814129,Fam222b,Fam222b_fiveUTR,11,78153789,78153838,78153837,78153838,50,+,ATAAAAATCTTCCCCAACAGTGTGAAGGTTCCCCAGCGGAAACACGTTCG,5' UTR,11,78094660,78156700,62041,1,Fam222b-201,59129,Fam222b-201;Fam222b-202;Fam222b-203;Gm12571-201;Traf4-203,Fam222b;Fam222b;Fam222b;Gm12571;Traf4,0;0;0;-4351;11751,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,10,21,216971,ENSMUSG00000037750,conserved gene and region,11,78153825,78153900,76,*,76,9,0.631578947,1.266666667,0.118421053,8.12E-08,CpGisland,TRUE,U10,Tr-S
23011,cg10078733,-0.0000621,0.0000103,-5.998465512,5.55E-09,loss,yes,0.0000648,0.0000176,3.684328513,0.00027053,pos,ns,0.006159794,0.005150847,1.195879829,0.23265738,pos,ns,0.633283166,-0.0000658,0.000177137,-0.371294754,0.710671631,neg,ns,0.380282546,Tmco5,Tmco5_Intergenic_upstream,2,116821234,116821283,116821234,116821235,50,+,CGAGAAAGGTGCAAAGCTGTAGATATGTATTAATCTGATATATAAAAACT,Distal Intergenic,2,116878691,116892181,13491,1,Tmco5-202,-57408,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,14,67356,ENSMUSG00000027355,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18921,cg01986981,0.00025555,0.000016,16.00995887,1.83E-42,gain,yes,-0.0000999,0.0000271,-3.683967761,0.000270898,neg,ns,-0.01132331,0.007944422,-1.425315632,0.155072045,neg,ns,0.809466486,-0.0000665,0.000273208,-0.243542282,0.807746419,neg,ns,0.594698059,Antxr2,Antxr2_Intron,5,97935178,97935227,97935226,97935227,50,-,CCTGCTGTCCCCTGTCACTCCCTGGAAACTTGGCGGCAGATGTTGCAGCG,"Intron (Antxr2-201/Antxr2, intron 16 of 16)",5,97882783,98030962,148180,2,Antxr2-201,95735,Antxr2-201;Antxr2-202,Antxr2;Antxr2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,4,71914,ENSMUSG00000029338,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
9532,cg00764339,0.000132199,0.00000787,16.80685079,1.63E-45,gain,yes,-0.0000492,0.0000134,-3.683616304,0.000271256,neg,ns,0.001836408,0.003914889,0.469083005,0.63934003,pos,ns,0.194268103,0.000000841,0.000134633,0.006249166,0.995017939,pos,ns,0.126024171,Igf2bp3,Igf2bp3_fiveUTR,6,49214919,49214968,49214919,49214920,50,-,CGAGTGTCCGGCTTTTTGAATGAGCCACGTGTTCAAACTACAAATCAACG,Promoter (<=1kb),6,49085223,49214957,129735,2,Igf2bp3-201,0,Igf2bp3-201;Igf2bp3-202;Igf2bp3-203,Igf2bp3;Igf2bp3;Igf2bp3,0;-758;-215,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,5,140488,ENSMUSG00000029814,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
1802,cg00839434,-0.0000288,0.00000468,-6.14380052,2.47E-09,loss,yes,0.0000293,0.00000796,3.683391434,0.000271485,pos,ns,0.005956584,0.00233117,2.555190762,0.011090234,pos,ns,1.95505929,-0.0000687,0.0000802,-0.856798142,0.39221829,neg,ns,0.098467091,Dll1,Dll1_Promoter,17,15376997,15377046,15376997,15376998,50,+,CGTGGCTGTCATTAAGGCAGCCTGTTATTGTGCGAGGCTGAATCAGTGGC,Promoter (<=1kb),17,15374794,15376872,2079,2,Dll1-205,-125,Dll1-201;Dll1-203;Dll1-202;Dll1-205,Dll1;Dll1;Dll1;Dll1,-1021;-2925;-1897;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,9,9,13388,ENSMUSG00000014773,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16708,cg15977208,-0.0000104,0.000016,-0.648357758,0.51723354,loss,ns,0.000100205,0.0000272,3.682993806,0.000271891,pos,ns,0.013809622,0.007970892,1.732506465,0.084178003,pos,ns,1.07480138,-0.000224687,0.000274118,-0.819670138,0.413033922,neg,ns,0.214581105,Gpatch2l,Gpatch2l_Intergenic_upstream,12,86214457,86214506,86214505,86214506,50,+,GCTTCATTATTCGCTTAAGTTGCCGGAGAGAATTACTTAACCCTGACCCG,Distal Intergenic,12,86241858,86291784,49927,1,Gpatch2l-204,-27352,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,13,17,70373,ENSMUSG00000021254,conserved gene but different region,12,86214265,86214574,310,*,310,23,0.54516129,1.024719747,0.074193548,7.83E-15,CpGisland,TRUE,U13,Hc-P
21070,cg09351171,-0.0000132,0.00000736,-1.795461809,0.073553993,loss,ns,-0.000046,0.0000125,-3.681205043,0.000273725,neg,ns,0.006679712,0.003663851,1.823139957,0.069245181,pos,ns,1.159610443,-0.00051984,0.000126,-4.125731518,0.0000475,neg,ns,0.802453966,Smpd3,Smpd3_Exon,8,106259699,106259748,106259699,106259700,50,-,CGAGGAGGTAGATTTTCGGAAATCAGCCAGCCAGTCCTGAAGCAGGTCCA,"Exon (Smpd3-201/Smpd3, exon 5 of 9)",8,106252548,106337988,85441,2,Smpd3-201,78240,Smpd3-201;Smpd3-202,Smpd3;Smpd3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,58994,ENSMUSG00000031906,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25534,cg21128693,0.0000154,0.00000253,6.090398854,3.33E-09,gain,yes,0.0000158,0.00000429,3.680484174,0.000274467,pos,ns,-0.000483338,0.001257611,-0.384330373,0.7009971,neg,ns,0.154283779,0.000061,0.0000432,1.411574332,0.159078228,pos,ns,0.962063635,Ebf3,Ebf3_Exon,7,137199070,137199119,137199070,137199071,50,+,CGTGTGACAAAAACAGACACTTACTGCCGTAGGGAGAGTTAGCGGAGGAG,"Exon (Ebf3-204/Ebf3, exon 14 of 16)",7,137193673,137314445,120773,2,Ebf3-204,115326,Ebf3-204;Ebf3-201;Ebf3-202;Ebf3-203;Ebf3-208;Ebf3-205,Ebf3;Ebf3;Ebf3;Ebf3;Ebf3;Ebf3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,84,13593,ENSMUSG00000010476,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5298,cg06540073,0.0000862,0.0000084,10.26442319,1.80E-21,gain,yes,-0.0000525,0.0000143,-3.68044343,0.000274509,neg,ns,-0.001852653,0.004181161,-0.443095315,0.658005843,neg,ns,0.18177025,0.000214335,0.00014379,1.490612795,0.137079964,pos,ns,0.907633856,Atxn7l1,Atxn7l1_Intron,12,33345227,33345276,33345275,33345276,50,+,CAGTAAATTGTATTTATAGGCACTCACAGGCGGTTCTAAAGCCTGCTACG,"Intron (Atxn7l1-212/Atxn7l1, intron 6 of 12)",12,33147754,33373030,225277,1,Atxn7l1-212,197473,Atxn7l1-212;Atxn7l1-204;Atxn7l1-202;Atxn7l1-207;Atxn7l1-213;Atxn7l1-205,Atxn7l1;Atxn7l1;Atxn7l1;Atxn7l1;Atxn7l1;Atxn7l1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,24,380753,ENSMUSG00000020564,conserved gene and region,12,33345257,33345411,155,*,155,14,0.64516129,0.885352917,0.090322581,2.25E-10,CpGisland,TRUE,U12,Tr-I
16650,cg25622623,0.000139625,0.00000869,16.06551575,1.12E-42,gain,yes,-0.0000543,0.0000148,-3.679693024,0.000275284,neg,ns,-0.007734353,0.004325577,-1.78805097,0.074744356,neg,ns,1.126421595,0.00010785,0.000148756,0.725012733,0.468991111,pos,ns,0.092057604,Tbx2,Tbx2_fiveUTR,11,85832704,85832753,85832704,85832705,50,-,CGCCCCCGGAGACCCACAATTGGTCCAAAAAGCGTAAAATCAGCAATCAA,Promoter (<=1kb),11,85832551,85841948,9398,1,Tbx2-201,153,Tbx2-201,Tbx2,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,12,14,21385,ENSMUSG00000000093,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
8419,cg10500926,-0.0000332,0.0000146,-2.282891973,0.023113491,loss,ns,0.000091,0.0000247,3.678754171,0.000276257,pos,ns,0.020993244,0.007247093,2.896781518,0.004038404,pos,ns,2.393790248,-0.000428607,0.000249227,-1.71974418,0.086477031,neg,ns,0.508092338,Kazald1,Kazald1_Intron,19,45104799,45104848,45104847,45104848,50,+,GAGCTGTGCACCTCCAAATTAAATTTGTGATTCAGGCATCAGATGGGCCG,"Intron (Gm35867-203/Gm35867-203, intron 2 of 4)",19,45076139,45079289,3151,1,Kazald1-201,28660,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,8,107250,ENSMUSG00000025213,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15817,cg03011459,0.00000355,0.00000279,1.271565948,0.204480545,gain,ns,-0.0000174,0.00000474,-3.678453142,0.000276569,neg,ns,0.005768602,0.001388409,4.154827857,0.0000421,pos,ns,4.375225557,-0.000250175,0.0000477,-5.239563856,0.000000298,neg,yes,0.938854221,Zfyve1,Zfyve1_fiveUTR,12,83558673,83558722,83558673,83558674,50,-,CGCCATCTGGTCATCGGGGATCTCACCGCTGAAGCGGTCACTTAGTGCCT,5' UTR,12,83546558,83597114,50557,2,Zfyve1-203,38392,Zfyve1-203;Zfyve1-201;Zfyve1-204,Zfyve1;Zfyve1;Zfyve1,0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,1,217695,ENSMUSG00000042628,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14892,cg12215343,0.000129421,0.0000142,9.113095109,1.02E-17,gain,yes,-0.0000887,0.0000241,-3.677812275,0.000277235,neg,ns,0.051990968,0.007068315,7.355496581,1.71E-12,pos,yes,11.76649019,-0.001517596,0.000243079,-6.243225728,1.41E-09,neg,yes,0.661069981,Fam222b,Fam222b_Intron,11,78113852,78113901,78113852,78113853,50,+,CGTCCAGGGCTTTTTCAGGAACCGTGCCATTTTATCTACAGGAGAAGCCA,"Intron (Fam222b-201/Fam222b, intron 1 of 2)",11,78094660,78156700,62041,1,Fam222b-201,19192,Fam222b-201;Fam222b-202;Fam222b-203,Fam222b;Fam222b;Fam222b,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,21,216971,ENSMUSG00000037750,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14904,cg15918741,-0.0000481,0.0000064,-7.505403589,6.54E-13,loss,yes,-0.00004,0.0000109,-3.67739232,0.000277673,neg,ns,0.016942783,0.003187274,5.315760396,0.000000204,pos,ns,6.691407899,-0.000750883,0.00010961,-6.850489315,3.97E-11,neg,yes,0.738768623,Fam222b,Fam222b_fiveUTR,11,78153785,78153834,78153833,78153834,50,-,GACTATAAAAATCTTCCCCAACAGTGTGAAGGTTCCCCAGCGGAAACACG,5' UTR,11,78094660,78156700,62041,1,Fam222b-201,59125,Fam222b-201;Fam222b-202;Fam222b-203;Gm12571-201;Traf4-203,Fam222b;Fam222b;Fam222b;Gm12571;Traf4,0;0;0;-4347;11755,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,10,21,216971,ENSMUSG00000037750,conserved gene and region,11,78153825,78153900,76,*,76,9,0.631578947,1.266666667,0.118421053,8.12E-08,CpGisland,TRUE,U10,Tr-S
25977,cg05450500,0.0000802,0.000011,7.261761652,3.10E-12,gain,yes,0.000069,0.0000188,3.677156066,0.000277919,pos,ns,0.020281781,0.005497027,3.68959104,0.000265227,pos,ns,3.576381699,-0.000416014,0.000189042,-2.200637547,0.028498855,neg,ns,0.427064778,Tmem164,Tmem164_Exon,X,142682674,142682723,142682674,142682675,50,+,CGGCTGCTGGAAAGTGTGGTGGTCCTGACCCTGGCTCTGTTGGAGATCCT,"Exon (Tmem164-201/Tmem164, exon 2 of 7)",20,142681406,142843494,162089,1,Tmem164-204,1268,Tmem164-204;Tmem164-202;Tmem164-205;Tmem164-201;Tmem164-206;Tmem164-208;Tmem164-207,Tmem164;Tmem164;Tmem164;Tmem164;Tmem164;Tmem164;Tmem164,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,15,209497,ENSMUSG00000047045,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
4476,cg19234378,0.0000677,0.0000112,6.032179522,4.60E-09,gain,yes,-0.0000701,0.0000191,-3.676536838,0.000278566,neg,ns,0.03825682,0.005589603,6.844282527,4.12E-11,pos,yes,10.38507789,-0.000763526,0.000192226,-3.972021586,0.0000887,neg,ns,0.418152406,Srsf3,Srsf3_threeUTR,17,29039512,29039561,29039560,29039561,50,+,CCTTTCAGCGTCATGTGACCAGCGCGCCCCATTCAGCTTGGCTGGTGTCG,Promoter (<=1kb),17,29039518,29042110,2593,1,Srsf3-205,0,Srsf3-202;Srsf3-201;Srsf3-204;Srsf3-210;Srsf3-209;Srsf3-208;Srsf3-203;Srsf3-206;Srsf3-205;Srsf3-207,Srsf3;Srsf3;Srsf3;Srsf3;Srsf3;Srsf3;Srsf3;Srsf3;Srsf3;Srsf3,0;0;0;6839;6823;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,7,20383,ENSMUSG00000071172,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7648,cg09195412,0.0000568,0.0000159,3.567532431,0.000417337,gain,ns,-0.0000994,0.000027,-3.676452182,0.000278654,neg,ns,0.012246173,0.007923181,1.5456131,0.123218249,pos,ns,0.909324968,0.000225327,0.000272478,0.826956281,0.408897912,pos,ns,0.712686422,Zbtb20,Zbtb20_Intron,16,43557538,43557587,43557586,43557587,50,-,ACAGAGACATGATTCATGCTGCTTGTAGTAACAGTAACCACCTCCAAACG,"Intron (Zbtb20-211/Zbtb20, intron 4 of 4)",16,42907542,43569781,662240,1,Zbtb20-211,649996,Zbtb20-211;Zbtb20-217;Zbtb20-204;Zbtb20-215;Zbtb20-201;Zbtb20-203;Zbtb20-214;Zbtb20-213;Zbtb20-219;Zbtb20-216;Zbtb20-208;Zbtb20-207;Zbtb20-220;Zbtb20-206;Zbtb20-221;Zbtb20-202;Zbtb20-205,Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,98,56490,ENSMUSG00000022708,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14893,cg22914892,0.0000154,0.00000907,1.700868359,0.089970517,gain,ns,0.0000566,0.0000154,3.6759568,0.000279173,pos,ns,0.002500059,0.004513443,0.553913999,0.580037025,pos,ns,0.236544283,-0.000122502,0.000155217,-0.789231062,0.430580169,neg,ns,0.694436341,Cacng2,Cacng2_Intron,15,78117245,78117294,78117293,78117294,50,+,TCAATGAAGTCACTTAGCTATTCAAAACATGTTCAGCCATCACTCAACCG,"Intron (Cacng2-201/Cacng2, intron 1 of 3)",15,77991748,78120028,128281,2,Cacng2-201,2734,Cacng2-201,Cacng2,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,6,12300,ENSMUSG00000019146,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15532,cg01594275,0.00000276,0.0000029,0.953265119,0.341198453,gain,ns,-0.0000181,0.00000492,-3.675741678,0.000279398,neg,ns,-0.002439713,0.001441866,-1.69205319,0.091640663,neg,ns,1.037911778,-0.0000174,0.0000496,-0.351636267,0.725349953,neg,ns,0.924085559,Ep300,Ep300_Intron,15,81633853,81633902,81633901,81633902,50,-,TGCATCATTGAATGTCCTTGTCGCCGTTGATGACCTGCTCTCTGCTCCCG,"Intron (Ep300-201/Ep300, intron 19 of 30)",15,81585397,81652077,66681,1,Ep300-201,48456,Ep300-201;Ep300-207;Ep300-204,Ep300;Ep300;Ep300,0;0;-2246,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,7,328572,ENSMUSG00000055024,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6659,cg16073260,-0.000039,0.00000527,-7.385729495,1.41E-12,loss,yes,-0.0000329,0.00000896,-3.675632882,0.000279513,neg,ns,0.003968532,0.002624913,1.511871799,0.131585194,pos,ns,0.880792975,-0.000477434,0.0000903,-5.288923266,0.000000233,neg,yes,0.916469191,Trim24,Trim24_Exon,6,37945534,37945583,37945534,37945535,50,+,CGAGGATAAAGAGAGCCAGCCACAAATGCCTAAGCAGAATCCTGTCGTGG,"Exon (Trim24-207/Trim24, exon 8 of 8)",6,37870811,37946799,75989,1,Trim24-207,74723,Trim24-207;Trim24-201;Trim24-203;Trim24-202;Trim24-205,Trim24;Trim24;Trim24;Trim24;Trim24,0;0;0;0;-2976,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,21848,ENSMUSG00000029833,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4515,cg00250826,0.00000543,0.00000374,1.45448219,0.146824406,gain,ns,-0.0000233,0.00000635,-3.674180609,0.00028104,neg,ns,-0.004685469,0.001859054,-2.520351541,0.012225633,neg,ns,1.91272866,0.0000192,0.0000639,0.300985003,0.763627704,pos,ns,0.856823691,Calu,Calu_threeUTR,6,29361701,29361750,29361701,29361702,50,+,CGGCTTAATCTCCTGGGATGAGTACAGAAACGTGACTTATGGCACTTACC,3' UTR,6,29348069,29374503,26435,1,Calu-207,13632,Calu-207;Calu-208;Calu-206;Calu-201;Calu-202;Calu-209;Calu-204,Calu;Calu;Calu;Calu;Calu;Calu;Calu,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,9,12321,ENSMUSG00000029767,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1350,cg20257626,-0.000137811,0.000022,-6.270600584,1.21E-09,loss,yes,0.00013715,0.0000373,3.673340541,0.000281927,pos,ns,-0.010550414,0.010938322,-0.964536769,0.335528694,neg,ns,0.474270334,0.000547353,0.000376168,1.455075713,0.146660141,pos,ns,0.751054681,Fam49a,Fam49a_Intergenic_downstream,12,12401520,12401569,12401568,12401569,50,+,GTCTATAAACAGAAGCAGGTTTTCTGTGATACGTTACCCCGATAAACCCG,Distal Intergenic,12,12262189,12343432,81244,1,Fam49a-204,139331,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,76820,ENSMUSG00000020589,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18607,cg17854644,0.0000234,0.00000992,2.359670731,0.018910738,gain,ns,0.0000619,0.0000169,3.672464228,0.000282855,pos,ns,0.013911179,0.004939193,2.816488066,0.00516651,pos,ns,2.286802723,-0.000385367,0.000169858,-2.268751957,0.023970654,neg,ns,0.27578102,Hoxb5,Hoxb5_Intergenic_downstream,11,96310644,96310693,96310644,96310645,50,-,CGATTAAATCGCCATTTTAACAATATAATGGAGTTTGCATCCTGAAAGGG,Distal Intergenic,11,96303512,96306120,2609,1,Hoxb5-201,7181,Hoxb5-202;Hoxb5-201,Hoxb5;Hoxb5,0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,34,15413,ENSMUSG00000038700,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26426,cg19567491,0.0000352,0.0000122,2.888560265,0.0041426,gain,ns,-0.0000759,0.0000207,-3.672247757,0.000283085,neg,ns,0.005976417,0.006058269,0.986489275,0.324662395,pos,ns,0.488568012,-0.000053,0.000208343,-0.25425716,0.799465461,neg,ns,0.111312486,Foxa2,Foxa2_Intergenic_downstream,2,147876788,147876837,147876836,147876837,50,+,ACAATCTGTTTGCTTATGTTGAACAAACAGACTGTGTGTGGCATCCTTCG,Distal Intergenic,2,148044240,148045464,1225,2,Foxa2-203,168627,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,25,15376,ENSMUSG00000037025,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
18644,cg23350964,0.0000259,0.00000728,3.556342109,0.000434779,gain,ns,0.0000454,0.0000124,3.671225007,0.000284172,pos,ns,0.007937805,0.003621875,2.191628432,0.029150014,pos,ns,1.535361231,-0.000041,0.000124556,-0.329323773,0.742133368,neg,ns,0.788860062,Skap1,Skap1_Intergenic_upstream,11,96448140,96448189,96448188,96448189,50,-,AAAAATGGGAGGTGACAGTTCATTTTGCCAGTGACAGTCTGTCGGTCTCG,Distal Intergenic,11,96464593,96759130,294538,1,Skap1-203,-16453,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,46,78473,ENSMUSG00000057058,conserved gene and region,11,96448182,96448434,253,*,253,14,0.584980237,0.682860999,0.055335968,0.000000134,CpGisland,TRUE,U11,Tr-P
24007,cg14867393,0.000167245,0.0000153,10.96021125,7.64E-24,gain,yes,-0.0000952,0.0000259,-3.670682416,0.000284751,neg,ns,0.068862657,0.007594691,9.067209345,1.43E-17,pos,yes,16.84496838,-0.001650358,0.000261181,-6.318832139,9.15E-10,neg,yes,0.654257035,Atxn2,Atxn2_threeUTR,5,121814336,121814385,121814384,121814385,50,-,AGTACAAGCCCACCACCAACAGCAGTTGTAAGGCTGCCCTGGAGGAACCG,3' UTR,5,121711609,121814950,103342,1,Atxn2-201,102727,Atxn2-201;Atxn2-209;Atxn2-214;Atxn2-215;Atxn2-210;Atxn2-203;Atxn2-206;Atxn2-212;Atxn2-211;Atxn2-205;Atxn2-218;Sh2b3-205;Sh2b3-202;Sh2b3-208;Sh2b3-204;Sh2b3-201;Sh2b3-203;Sh2b3-207,Atxn2;Atxn2;Atxn2;Atxn2;Atxn2;Atxn2;Atxn2;Atxn2;Atxn2;Atxn2;Atxn2;Sh2b3;Sh2b3;Sh2b3;Sh2b3;Sh2b3;Sh2b3;Sh2b3,0;0;0;12590;0;0;0;3672;3371;0;0;22440;22474;14356;21719;22465;22432;23261,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,16,20239,ENSMUSG00000042605,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26856,cg10548441,0.0000339,0.0000125,2.706667499,0.007172811,gain,ns,-0.0000781,0.0000213,-3.668921199,0.000286637,neg,ns,-0.019741124,0.006240132,-3.163574892,0.001712955,neg,ns,2.766254083,0.00015813,0.000214598,0.736867686,0.461760111,pos,ns,0.665563442,Nol4l,Nol4l_Exon,2,153483825,153483874,153483825,153483826,50,+,CGACAGGCCATCTGCCCCCTGCGACAGGGTGGACAAGCTGTGTTAGTGTC,Promoter (<=1kb),2,153453899,153483826,29928,2,Nol4l-205,0,Nol4l-201;Nol4l-205;Nol4l-203;Nol4l-206,Nol4l;Nol4l;Nol4l;Nol4l,0;0;0;-4099,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,14,329540,ENSMUSG00000061411,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
22041,cg08538032,-0.0000593,0.0000161,-3.687318297,0.000267505,loss,ns,0.000100225,0.0000273,3.665678004,0.00029014,pos,ns,0.004268104,0.008010131,0.532838215,0.594527324,pos,ns,0.225828181,-0.000121967,0.000275468,-0.442764645,0.658244767,neg,ns,0.436323148,Elavl4,Elavl4_Intron,4,110287611,110287660,110287611,110287612,50,+,CGTTGCAACATCAGGTGCTATTTAAATTAGCTACTGCCAGATTGACGATG,"Intron (Elavl4-205/Elavl4, intron 1 of 6)",4,110203737,110290272,86536,2,Elavl4-205,2612,Elavl4-204;Elavl4-201;Elavl4-203;Elavl4-202;Elavl4-205;Elavl4-206;Elavl4-207;Elavl4-208;Elavl4-212;Elavl4-209,Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,36,15572,ENSMUSG00000028546,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19645,cg12916629,0.0000252,0.0000118,2.131769515,0.03381187,gain,ns,-0.0000735,0.0000201,-3.665148517,0.000290716,neg,ns,-0.002701023,0.005874196,-0.459811523,0.645973822,neg,ns,0.189785081,-0.000190119,0.000202013,-0.941120249,0.347376019,neg,ns,0.895784186,Gm28267,Gm28267_Intergenic_upstream,9,100266938,100266987,100266986,100266987,50,-,AAGACAGCTTGCACAGGCCCCGATAAATGCCTATCGCTCATTTGCATACG,Distal Intergenic,9,100404495,100404759,265,1,Gm28267-201,-137557,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,29,29,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21287,cg12249063,0.000015,0.00000843,1.775783142,0.076749593,gain,ns,0.0000525,0.0000143,3.66493442,0.000290949,pos,ns,0.009140144,0.004195081,2.17877646,0.030101176,pos,ns,1.521416541,-0.00042282,0.000144268,-2.930785481,0.003632347,neg,ns,0.427280685,Gm5187,Gm5187_Intergenic_downstream,12,107104876,107104925,107104924,107104925,50,+,ACAATCTACATGTATTAAGTGGTAATGACTTTCCAGTTAAGAGCAAATCG,Distal Intergenic,12,107205076,107206066,991,2,Gm5187-201,101141,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,10,382635,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7627,cg10258729,0.000164793,0.0000159,10.34816022,9.41E-22,gain,yes,-0.0000991,0.0000271,-3.664756483,0.000291143,neg,ns,0.000684868,0.007925971,0.086408123,0.931197773,pos,ns,0.030958071,0.00000752,0.000272573,0.027599986,0.977998952,pos,ns,0.616403761,Zbtb20,Zbtb20_Intron,16,43503988,43504037,43504036,43504037,50,-,TTACCCAAGTTCATTTCTAGCAGGTGGATTTAGACGGGAGTTACTTAACG,"Intron (Zbtb20-211/Zbtb20, intron 4 of 4)",16,42907542,43569781,662240,1,Zbtb20-211,596446,Zbtb20-211;Zbtb20-217;Zbtb20-204;Zbtb20-215;Zbtb20-201;Zbtb20-203;Zbtb20-214;Zbtb20-213;Zbtb20-219;Zbtb20-216;Zbtb20-208;Zbtb20-207;Zbtb20-220;Zbtb20-206;Zbtb20-221;Zbtb20-202,Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,98,56490,ENSMUSG00000022708,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23351,cg27243599,-0.0000144,0.0000048,-2.995598134,0.002960005,loss,ns,0.0000299,0.00000815,3.664215582,0.000291733,pos,ns,0.000698879,0.002387585,0.292713794,0.769936752,pos,ns,0.113544949,-0.000161382,0.0000821,-1.965460504,0.050253424,neg,ns,0.92995565,Thbs1,Thbs1_Exon,2,118120851,118120900,118120899,118120900,50,+,CATTACAACCCAGCTCAGTATGACTATGACAGAGATGATGTGGGAGACCG,"Exon (Thbs1-201/Thbs1, exon 15 of 22)",2,118111876,118127133,15258,1,Thbs1-201,8975,Thbs1-201;Thbs1-202,Thbs1;Thbs1,0;-2040,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,21825,ENSMUSG00000040152,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8685,cg17380464,0.0000136,0.00000706,1.93235425,0.054226664,gain,ns,0.0000439,0.000012,3.663919692,0.000292056,pos,ns,0.006285935,0.003513606,1.789026846,0.074586708,pos,ns,1.12733856,0.0000429,0.000120833,0.35505118,0.722792686,pos,ns,0.830584337,Poll,Poll_Intergenic_downstream,19,45549109,45549158,45549109,45549110,50,+,CGGGAGCTGGGTAAGAGGCGGGGAAATGAATATTAATTTATCATGATTAG,Distal Intergenic,19,45552275,45560531,8257,2,Poll-201,11373,Poll-201,Poll,11373,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,16,56626,ENSMUSG00000025218,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5700,cg23463700,0.00019941,0.0000143,13.92375022,1.45E-34,gain,yes,-0.0000891,0.0000243,-3.662122816,0.000294027,neg,ns,-0.009458888,0.007128011,-1.327002474,0.18548443,neg,ns,0.73169254,0.000789118,0.000245132,3.219158346,0.001421917,pos,ns,0.728727559,Pbx2,Pbx2_threeUTR,17,34596394,34596443,34596442,34596443,50,-,CAATAGAATCGCTCGGTGGACGAGAGTGTCTGACTCAGATATCTACCTCG,3' UTR,17,34591266,34596607,5342,1,Pbx2-203,5128,Ager-201;Ager-209;Ager-212;Ager-213;Ager-202;Ager-203;Ager-205;Ager-206;Ager-210;Ager-211;Ager-204;Ager-207;Ager-208;Gpsm3-201;Gpsm3-202;Gpsm3-203;Pbx2-203;Pbx2-201;Pbx2-205;Pbx2-204;Pbx2-202;Rnf5-201;Rnf5-203,Ager;Ager;Ager;Ager;Ager;Ager;Ager;Ager;Ager;Ager;Ager;Ager;Ager;Gpsm3;Gpsm3;Gpsm3;Pbx2;Pbx2;Pbx2;Pbx2;Pbx2;Rnf5;Rnf5,-1419;-1419;-1432;-1432;-1451;-1451;-1451;-1451;-1451;-1451;-1451;-1451;-1451;6588;6302;6163;0;0;0;2999;934;7247;6933,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,threeUTR,2,4,18515,ENSMUSG00000034673,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26873,cg15803228,-0.0000103,0.00000508,-2.020032138,0.044239928,loss,ns,-0.0000316,0.00000863,-3.661143273,0.000295106,neg,ns,-0.008755021,0.002529725,-3.46085818,0.000613995,neg,ns,3.211835474,0.0000128,0.000087,0.146607378,0.883537224,pos,ns,0.870962123,Snta1,Snta1_Exon,2,154377128,154377177,154377176,154377177,50,-,GCCCACAGTGTGAAGCCCTTGTCGATGTGCACAGACAGGCTGCAGGGACG,"Exon (Snta1-201/Snta1, exon 7 of 8)",2,154376313,154408081,31769,2,Snta1-201,30904,Cdk5rap1-203;Cdk5rap1-201;Cdk5rap1-205;Cdk5rap1-202;Cdk5rap1-204;Snta1-201;Snta1-202,Cdk5rap1;Cdk5rap1;Cdk5rap1;Cdk5rap1;Cdk5rap1;Snta1;Snta1,-4118;-4409;-4367;-4397;-4437;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,20648,ENSMUSG00000027488,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15174,cg18470131,0.0000409,0.00000434,9.417316694,1.10E-18,gain,yes,-0.000027,0.00000738,-3.659435886,0.000296997,neg,ns,0.001990029,0.002161278,0.920765016,0.357889093,pos,ns,0.446251537,0.0000647,0.0000743,0.87003452,0.384954716,pos,ns,0.147361837,Polg,Polg_Intron,7,79505999,79506048,79505999,79506000,50,-,CGCCCCTCGGTGAGGTCAAGTTCTTGATAATTTGATCACTTTTCACGGGC,"Intron (Mir9-3hg-205/Mir9-3hg-205, intron 1 of 1)",7,79446231,79466362,20132,2,Polg-201,-39686,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,16,18975,ENSMUSG00000039176,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
4360,cg19625375,0.0000838,0.0000213,3.930051945,0.000104774,gain,ns,-0.000132566,0.0000362,-3.659348369,0.000297094,neg,ns,-0.032834002,0.010613219,-3.093689278,0.002156891,neg,ns,2.666171861,0.000626594,0.000364988,1.716753649,0.087023057,pos,ns,0.561243592,Wnt5a,Wnt5a_Exon,14,28511642,28511691,28511642,28511643,50,+,CGTGGGTGGATTAATTTGGAAAAAGAAACTGCCTATATCTTGCCATCAAA,"Exon (Wnt5a-203/Wnt5a, exon 1 of 4)",14,28504750,28527448,22699,1,Wnt5a-201,6892,Wnt5a-201;Wnt5a-204;Wnt5a-206;Wnt5a-203;Wnt5a-202;Wnt5a-205,Wnt5a;Wnt5a;Wnt5a;Wnt5a;Wnt5a;Wnt5a,0;5742;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,8,22418,ENSMUSG00000021994,conserved gene but different region,14,28511548,28511643,96,*,96,8,0.583333333,0.990967742,0.083333333,0.00000859,CpGisland,TRUE,U13,Hc-P
22469,cg23545992,0.0000981,0.0000126,7.795738643,9.79E-14,gain,yes,-0.0000782,0.0000214,-3.65746517,0.000299193,neg,ns,-0.029507017,0.006260653,-4.713089262,0.00000369,neg,ns,5.432877519,0.00078806,0.000215303,3.660230371,0.000296115,pos,ns,0.731052218,Gm13975,Gm13975_Intergenic_downstream,2,114763311,114763360,114763311,114763312,50,+,CGTTTGAAATGTTTAAGCAATCTCAGTGATGTATGGAATCCTGACACTCC,Distal Intergenic,2,114708112,114708893,782,1,Gm13975-201,55199,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,9,100043219,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26184,cg15751632,0.0000427,0.0000223,1.917891047,0.056043383,gain,ns,-0.000138392,0.0000379,-3.656236579,0.00030057,neg,ns,0.034690425,0.01108903,3.128355308,0.001924891,pos,ns,2.715593803,-0.001531054,0.000381351,-4.014818306,0.0000747,neg,ns,0.627494487,Sox5,Sox5_Intron,6,144256314,144256363,144256362,144256363,50,-,GCCCTCCCAGGCCAGACAAAGGTCAAATCACAGGATTTCAATTTCATCCG,"Intron (Sox5-209/Sox5, intron 4 of 13)",6,143843739,144781977,938239,2,Sox5-209,525614,Sox5-209;Sox5-212,Sox5;Sox5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,71,20678,ENSMUSG00000041540,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21467,cg25007568,0.0000093,0.00000648,1.4349575,0.152307305,gain,ns,0.0000403,0.000011,3.65605225,0.000300777,pos,ns,0.001836698,0.003226564,0.569242714,0.569603648,pos,ns,0.244427238,0.0000105,0.000110961,0.095035637,0.924347921,pos,ns,0.915967601,Bcl11b,Bcl11b_Exon,12,107915473,107915522,107915521,107915522,50,-,TTCTCCAGGGTGCTGTAGACGCTGAAGGGCATCTGGCAGATGTCGCAGCG,"Exon (Bcl11b-201/Bcl11b, exon 4 of 4)",12,107910403,108003602,93200,2,Bcl11b-201,88080,Bcl11b-201;Bcl11b-202;Bcl11b-203,Bcl11b;Bcl11b;Bcl11b,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,11,39,58208,ENSMUSG00000048251,conserved gene and region,12,107915259,107916962,1704,*,1704,150,0.66314554,0.800892387,0.088028169,2.06E-104,CpGisland,TRUE,U15,NS
3408,cg04371354,0.0000028,0.00000493,0.56782165,0.57056709,gain,ns,0.0000306,0.00000838,3.655431267,0.000301475,pos,ns,0.002319896,0.002456091,0.944548114,0.345625214,pos,ns,0.461394583,-0.0000573,0.0000845,-0.678858356,0.497734104,neg,ns,0.831636278,A830031A19Rik,A830031A19Rik_Intergenic_downstream,11,24046494,24046543,24046542,24046543,50,+,AGAGCTATTTTAGAAAACCCAAATTGCCAACAGTAATAATCTCTCCGCCG,Downstream (2-3kb),11,24048955,24075054,26100,2,A830031A19Rik-201,28511,A830031A19Rik-201,A830031A19Rik,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,4,23,268391,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7491,cg19166078,0.0000704,0.0000056,12.57169372,1.43E-29,gain,yes,-0.0000347,0.00000951,-3.652836152,0.000304412,neg,ns,-0.010799168,0.002785667,-3.876690202,0.000129281,neg,ns,3.888464685,0.000354575,0.0000958,3.701247422,0.000253828,pos,ns,0.793162703,Mrps9,Mrps9_Intron,1,42888684,42888733,42888684,42888685,50,+,CGCCGCCGGTTTGATCTGTGGTAATATTTGTGAAGGTTCCATATGGACTT,"Intron (Mrps9-201/Mrps9, intron 5 of 10)",1,42851233,42905682,54450,1,Mrps9-201,37451,Mrps9-201;Mrps9-202;Mrps9-203;Mrps9-204;Mrps9-206,Mrps9;Mrps9;Mrps9;Mrps9;Mrps9,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,12,69527,ENSMUSG00000060679,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22046,cg15337108,-0.0000505,0.0000136,-3.727355793,0.000229948,loss,ns,0.0000841,0.000023,3.649781418,0.000307902,pos,ns,-0.005988144,0.006748049,-0.887388858,0.375557524,neg,ns,0.425323533,-0.0000207,0.000232065,-0.089237802,0.928950548,neg,ns,0.601454979,Gm7134,Gm7134_Intergenic_upstream,X,110318752,110318801,110318800,110318801,50,+,TGAACATAATGTCTTTCAGTTTTACAATTAACAGTTCACTAGGCAAATCG,Distal Intergenic,20,110372753,110375158,2406,1,Gm7134-201,-53952,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,634340,ENSMUSG00000082853,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26527,cg09179030,0.0000137,0.000018,0.762623548,0.44626783,gain,ns,0.000111507,0.0000306,3.649757581,0.00030793,pos,ns,0.023998968,0.008950676,2.681246557,0.00772752,pos,ns,2.111959839,-0.000585964,0.000307813,-1.90363516,0.057883627,neg,ns,0.482192149,Casz1,Casz1_Intron,4,148882427,148882476,148882427,148882428,50,-,CGTTAGGATAATGGAACGAAGCTAAAATATAAATGACTCCCTGTCAAGAA,"Intron (Casz1-201/Casz1, intron 2 of 15)",4,148804429,148945129,140701,1,Casz1-201,77998,Casz1-201;Casz1-202,Casz1;Casz1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,94,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1111,cg01184817,-0.00000259,0.0000151,-0.171198081,0.864179708,loss,ns,0.0000937,0.0000257,3.647243141,0.000310832,pos,ns,0.035738248,0.007522579,4.750797002,0.0000031,pos,ns,5.508121258,-0.001305826,0.000258701,-5.04762825,0.000000764,neg,yes,0.421072837,Gm14515,Gm14515_Intergenic_downstream,X,11631295,11631344,11631343,11631344,50,-,GCAGCAAGAAAATGCGTTGATTCACTCCCAAATCTGCTTTGCCCAAGCCG,Distal Intergenic,20,11601354,11601569,216,1,Gm14515-201,29990,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,28,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12658,cg00067884,0.0000214,0.00000297,7.197136989,4.66E-12,gain,yes,-0.0000184,0.00000505,-3.644600527,0.000313909,neg,ns,0.003282447,0.001478793,2.219679967,0.027163824,pos,ns,1.566009085,-0.0000631,0.0000509,-1.24078885,0.215621945,neg,ns,0.935445634,Herc1,Herc1_Exon,9,66448329,66448378,66448377,66448378,50,+,TGACCTCTCAGAGCTGCAGCTGAGGACTCTTTGCATAGAGGTGTGGCCCG,"Exon (Herc1-201/Herc1, exon 37 of 78)",9,66350526,66508775,158250,1,Herc1-201,97803,Herc1-201;Herc1-206;Herc1-204,Herc1;Herc1;Herc1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,15,15,235439,ENSMUSG00000038664,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21233,cg05757838,0.000051,0.0000206,2.472877759,0.013939032,gain,ns,-0.000127587,0.000035,-3.643015223,0.000315769,neg,ns,-0.002444489,0.010260405,-0.238244918,0.811848542,neg,ns,0.090524985,0.0000621,0.000352854,0.175945181,0.860451887,pos,ns,0.48306631,Gm13901,Gm13901_Intergenic_upstream,2,106895714,106895763,106895762,106895763,50,-,AAAGCTTATCTTCTAATAGACCAGCTGCTTTATTAGGCCGCCCCCACCCG,Distal Intergenic,2,106916771,106917238,468,1,Gm13901-201,-21057,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,3,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24550,cg25609082,-0.00000376,0.00000731,-0.513858923,0.607716702,loss,ns,-0.0000452,0.0000124,-3.642644782,0.000316205,neg,ns,-0.004930587,0.003638431,-1.355141203,0.176359185,neg,ns,0.753601918,-0.000149897,0.000125125,-1.197971243,0.231843326,neg,ns,0.61875761,Zmym4,Zmym4_Exon,4,126915240,126915289,126915240,126915241,50,-,CGAACAGCTGTGGCTGGAACTGAAGGAAGCATTTTATTCATGCCAGATGA,"Exon (Zmym4-204/Zmym4, exon 3 of 24)",4,126861939,126923148,61210,2,Zmym4-204,7859,Zmym4-204;Zmym4-201;Zmym4-208;Zmym4-207;Zmym4-206,Zmym4;Zmym4;Zmym4;Zmym4;Zmym4,0;0;0;-122;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,8,67785,ENSMUSG00000042446,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3907,cg04502704,0.0000489,0.0000104,4.725101581,0.00000349,gain,ns,-0.0000641,0.0000176,-3.642033413,0.000316926,neg,ns,-0.007608401,0.005155736,-1.475715853,0.141035158,neg,ns,0.850672612,-0.000201753,0.000177305,-1.137885764,0.256046857,neg,ns,0.580493672,Ddhd2,Ddhd2_Exon,8,25741672,25741721,25741672,25741673,50,+,CGGTTCATTTCAGAAGCAACTGTGTCCACAATAGTCTGACAGTAGGTGGG,"Exon (Ddhd2-201/Ddhd2, exon 8 of 18)",8,25725346,25754280,28935,2,Ddhd2-201,12559,Ddhd2-201;Ddhd2-206;Ddhd2-205,Ddhd2;Ddhd2;Ddhd2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,72108,ENSMUSG00000061313,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12018,cg05309081,0.0000388,0.00000552,7.021666208,1.39E-11,gain,yes,-0.0000342,0.00000938,-3.640217941,0.000319076,neg,ns,0.002576986,0.002748789,0.937498634,0.349231932,pos,ns,0.456886054,-0.0000644,0.0000945,-0.681275186,0.496205981,neg,ns,0.877869611,Ncor1,Ncor1_Exon,11,62359895,62359944,62359895,62359896,50,-,CGTTTGACCTCAGCATAAGGCATATAGGCGACTGATTTTCCTATGAAAGT,"Exon (Ncor1-211/Ncor1, exon 12 of 20)",11,62316426,62438515,122090,2,Ncor1-204,78571,Ncor1-204;Ncor1-201;Ncor1-213;Ncor1-214;Ncor1-202;Ncor1-205;Ncor1-211;Ncor1-218,Ncor1;Ncor1;Ncor1;Ncor1;Ncor1;Ncor1;Ncor1;Ncor1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,10,20185,ENSMUSG00000018501,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13202,cg16257604,0.0000697,0.0000181,3.856361119,0.000139973,gain,ns,-0.000111576,0.0000307,-3.635682594,0.000324508,neg,ns,0.027462607,0.008990868,3.054500201,0.00245002,pos,ns,2.610830334,-0.001631625,0.000309195,-5.277006593,0.000000247,neg,yes,0.756158476,Polr2a,Polr2a_Exon,11,69746376,69746425,69746376,69746377,50,-,CGCAGCTGATTGTTGATCTTCACGATGTCAGCCAGTTTGTGAGTCAGGTC,"Exon (Polr2a-201/Polr2a, exon 6 of 29)",11,69733997,69758637,24641,2,Polr2a-201,12212,Polr2a-201;Polr2a-202;Polr2a-203,Polr2a;Polr2a;Polr2a,0;0;-3805,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,20020,ENSMUSG00000005198,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20849,cg12308848,0.0000103,0.00000862,1.194314451,0.233268015,gain,ns,0.0000532,0.0000146,3.634868486,0.000325492,pos,ns,0.005212962,0.004288854,1.215467418,0.225112714,pos,ns,0.647599977,0.0000508,0.000147493,0.344705751,0.730549334,pos,ns,0.154092346,Pax6,Pax6_Promoter,2,105664673,105664722,105664673,105664674,50,+,CGGAAATGACAAATGTGCTGTTTTATCCGTACAATTTATTTCATTATTGT,Promoter (4-5kb),2,105668900,105697364,28465,1,Pax6-206,-4178,Pax6-206;Pax6-207;Pax6-210;Pax6-214,Pax6;Pax6;Pax6;Pax6,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,10,78,18508,ENSMUSG00000027168,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
11182,cg20255327,0.00000357,0.00000596,0.598642536,0.54984845,gain,ns,-0.0000368,0.0000101,-3.634074501,0.000326454,neg,ns,-0.010210551,0.002966125,-3.442386936,0.000655817,neg,ns,3.183217487,0.00025806,0.000102005,2.52988106,0.011905213,pos,ns,0.930690495,Slc25a21,Slc25a21_Intron,12,56851677,56851726,56851677,56851678,50,+,CGTCTGAAAGGCACTTAAATGAGTGGCACATTATCTCACACATCTGGAGT,"Intron (Slc25a21-201/Slc25a21, intron 3 of 9)",12,56712634,57197472,484839,2,Slc25a21-201,345746,Slc25a21-201;Slc25a21-205;Slc25a21-202;Slc25a21-204,Slc25a21;Slc25a21;Slc25a21;Slc25a21,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,7,217593,ENSMUSG00000035472,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21018,cg02355269,0.0000063,0.0000051,1.236252153,0.21730071,gain,ns,-0.0000315,0.00000866,-3.633469894,0.000327189,neg,ns,0.003821866,0.002538098,1.50579911,0.133136992,pos,ns,0.875701259,-0.000219651,0.0000873,-2.516484825,0.012357821,neg,ns,0.840216491,Nfatc3,Nfatc3_Exon,8,106078927,106078976,106078975,106078976,50,+,GAAAGGCCTTCTAGAGATCATCTCTATCTTCCTCTTGAGCCATCCTACCG,"Exon (Nfatc3-207/Nfatc3, exon 2 of 4)",8,106058840,106092576,33737,1,Nfatc3-207,20087,Nfatc3-207;Nfatc3-206;Nfatc3-202;Nfatc3-203;Nfatc3-201,Nfatc3;Nfatc3;Nfatc3;Nfatc3;Nfatc3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,18021,ENSMUSG00000031902,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14433,cg21458384,0.0000971,0.0000232,4.186807686,0.0000369,gain,ns,-0.000143205,0.0000394,-3.633185931,0.000327534,neg,ns,0.074282761,0.011547537,6.432779626,4.74E-10,pos,ns,9.323973538,-0.002704838,0.000397119,-6.811156097,5.04E-11,neg,yes,0.473062063,Ppp2r5e,Ppp2r5e_Exon,12,75593262,75593311,75593262,75593263,50,+,CGGACTTCCGAGAAAATCCGTCTACTTTATCCACTGATGGAGGAGTAGTT,"Exon (Ppp2r5e-201/Ppp2r5e, exon 2 of 14)",12,75450881,75596200,145320,2,Ppp2r5e-201,2889,Ppp2r5e-201;Ppp2r5e-205;Ppp2r5e-202;Ppp2r5e-204,Ppp2r5e;Ppp2r5e;Ppp2r5e;Ppp2r5e,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,7,26932,ENSMUSG00000021051,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6098,cg13911960,0.0000198,0.00000848,2.331760279,0.020353688,gain,ns,0.0000523,0.0000144,3.632562841,0.000328294,pos,ns,0.015886287,0.004220544,3.764037808,0.000199954,pos,ns,3.699069643,-0.00014896,0.000145144,-1.026292276,0.305553974,neg,ns,0.620778082,Nrg2,Nrg2_Exon,18,36032314,36032363,36032362,36032363,50,-,GTGTTTGTATCTTCAAACATACTTTGCTTAGGATCTGGCATGTACAATCG,"Exon (Nrg2-203/Nrg2, exon 5 of 10)",18,36017652,36197380,179729,2,Nrg2-203,165017,Nrg2-203;Nrg2-206;Nrg2-202;Nrg2-205;Nrg2-204;Nrg2-201,Nrg2;Nrg2;Nrg2;Nrg2;Nrg2;Nrg2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,20,100042150,ENSMUSG00000060275,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19814,cg01073946,0.000133122,0.0000102,13.08554168,1.88E-31,gain,yes,0.0000628,0.0000173,3.632459093,0.000328421,pos,ns,0.015685726,0.005063312,3.09791828,0.00212727,pos,ns,2.672177472,-0.000023,0.000174127,-0.132219951,0.894896098,neg,ns,0.439460552,Foxo4,Foxo4_Exon,X,101255133,101255182,101255181,101255182,50,+,TCATATGCAGAACTCATCAGCCAGGCCATTGAAAGCGCCCCGGAGAAGCG,Promoter (<=1kb),20,101254528,101260873,6346,1,Foxo4-201,605,Foxo4-201;Foxo4-203;Foxo4-202,Foxo4;Foxo4;Foxo4,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,2,54601,ENSMUSG00000042903,conserved gene and region,X,101255168,101255353,186,*,186,11,0.596774194,0.684280937,0.059139785,0.00000233,CpGisland,TRUE,NA,NRS
23570,cg15873606,-0.0000276,0.00000895,-3.078770171,0.002264449,loss,ns,0.0000552,0.0000152,3.630781211,0.000330475,pos,ns,0.001956621,0.004456723,0.439026773,0.660947978,pos,ns,0.179832721,-0.0000616,0.000153266,-0.401743917,0.688149323,neg,ns,0.845796811,Gprc5b,Gprc5b_Intergenic_upstream,7,119033734,119033783,119033782,119033783,50,-,TTTGACCCATGCATTCATCTTCTTTGAAATCTGAGAGACGACAGCATCCG,Distal Intergenic,7,118972047,118995211,23165,2,Gprc5b-201,-38572,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,64297,ENSMUSG00000008734,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27039,cg27625286,-0.00000409,0.00000372,-1.098230557,0.272956075,loss,ns,-0.000023,0.00000633,-3.629788302,0.000331696,neg,ns,-0.007829032,0.001853334,-4.224296423,0.0000315,neg,ns,4.501016028,0.000126234,0.0000637,1.980572469,0.048522944,pos,ns,0.859440621,Dlgap4,Dlgap4_Exon,2,156761868,156761917,156761916,156761917,50,-,TGAACTCTACCACCTCAAGGCCAACAGCTGGCAGCTGGTGGAGACCCCCG,"Exon (Dlgap4-205/Dlgap4, exon 12 of 13)",2,156613705,156764361,150657,1,Dlgap4-205,148163,Dlgap4-205;Dlgap4-212;Dlgap4-206;Dlgap4-202;Dlgap4-209;Dlgap4-204;Dlgap4-208;Dlgap4-213;Dlgap4-201;Dlgap4-203;Dlgap4-207,Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,17,228836,ENSMUSG00000061689,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25655,cg17145918,-0.0000427,0.00000932,-4.586009795,0.00000656,loss,ns,0.0000575,0.0000158,3.628912629,0.000332777,pos,ns,-0.003483622,0.004639432,-0.750872524,0.453298962,neg,ns,0.343615276,0.000141628,0.00015955,0.887674258,0.375404182,pos,ns,0.553822936,1110002E22Rik,1110002E22Rik_Exon,3,138066620,138066669,138066620,138066621,50,-,CGTGCGTGCAAAGCAAAACATTATTTATGCTGCCAAGCATGAAGGCGACA,"Exon (1110002E22Rik-201/1110002E22Rik, exon 1 of 2)",3,138065052,138081506,16455,1,1110002E22Rik-201,1568,1110002E22Rik-201;1110002E22Rik-202;Gm5105-201,1110002E22Rik;1110002E22Rik;Gm5105,0;-4928;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,7,102634333,ENSMUSG00000090066,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20030,cg20677061,0.0000375,0.0000109,3.446315697,0.000646705,gain,ns,0.000067,0.0000185,3.627772601,0.000334189,pos,ns,0.020145193,0.005410839,3.723117977,0.000233674,pos,ns,3.631389575,-0.000369341,0.000186078,-1.984869264,0.048040195,neg,ns,0.619279613,Cited1,Cited1_fiveUTR,X,102251985,102252034,102252033,102252034,50,+,GTCCTGGCTCGTGGGCGAGTTGGTGGCAAAATCTGAACTGGATACTCACG,Promoter (<=1kb),20,102247381,102252181,4801,2,Cited1-201,147,Cited1-201;Cited1-202;Cited1-204;Cited1-203;Cited1-205,Cited1;Cited1;Cited1;Cited1;Cited1,0;-133;-1039;-1210;-67,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,3,12705,ENSMUSG00000051159,conserved gene and region,X,102251994,102252330,337,*,337,27,0.643916914,0.783316116,0.080118694,3.34E-18,CpGisland,TRUE,U3,Pr-B
18296,cg18304538,0.0000498,0.0000185,2.689478123,0.007543809,gain,ns,0.000114079,0.0000315,3.62679074,0.000335409,pos,ns,0.023718869,0.009215074,2.573920712,0.010519577,pos,ns,1.97800173,-0.000432738,0.000316906,-1.365511384,0.173082371,neg,ns,0.43330339,Gm48316,Gm48316_Intron,13,94702352,94702401,94702400,94702401,50,+,AATATTTGTGACAGATACAACAAATTCTTGCACAAATTACATTTCATTCG,"Intron (Gm32351-201/Gm32351-201, intron 1 of 2)",13,94752270,94752593,324,1,Gm48316-201,-49869,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,42,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
16899,cg04484646,0.000000424,0.0000111,0.038112565,0.969622464,gain,ns,0.0000686,0.0000189,3.626617934,0.000335625,pos,ns,-0.002892828,0.005541541,-0.522025876,0.602025113,neg,ns,0.220385392,0.000305674,0.000190573,1.603974756,0.109737907,pos,ns,0.750536743,Ecel1,Ecel1_Intergenic_upstream,1,87169776,87169825,87169776,87169777,50,+,CGATCAGAGAGCACAATATTTCATTGCCGGCAATCGCAGCCAAGACATCA,Distal Intergenic,1,87147655,87156521,8867,2,Ecel1-204,-13255,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,13599,ENSMUSG00000026247,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8212,cg13406794,0.000102682,0.00000788,13.0240703,3.16E-31,gain,yes,-0.0000485,0.0000134,-3.624590479,0.00033816,neg,ns,-0.005804282,0.003923968,-1.479186665,0.140105857,neg,ns,0.853543708,0.000349229,0.000134945,2.587933537,0.010109956,pos,ns,0.831366771,Zcchc7,Zcchc7_Intron,4,44852234,44852283,44852234,44852235,50,-,CGTGTGATCACTAGGCTGTGCCATTGAAAATGTTAGACTGAGGATTGTAT,"Intron (Zcchc7-203/Zcchc7, intron 2 of 8)",4,44756568,44932203,175636,1,Zcchc7-203,95666,Zcchc7-203;Zcchc7-207;Zcchc7-205;Zcchc7-201,Zcchc7;Zcchc7;Zcchc7;Zcchc7,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,27,27,319885,ENSMUSG00000035649,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10590,cg07567498,-0.00000636,0.00000599,-1.061286464,0.289385847,loss,ns,-0.0000369,0.0000102,-3.624157168,0.000338704,neg,ns,0.004152605,0.00298112,1.392967824,0.164627624,pos,ns,0.78349729,-0.000273638,0.00010252,-2.669110146,0.008005732,neg,ns,0.939912998,Cdh24,Cdh24_Exon,14,54633700,54633749,54633748,54633749,50,+,GCTGGGGAGCATTGTCATTCTCATCCAGGGTCTGGATGGCCACTTGCACG,"Exon (Cdh24-201/Cdh24, exon 9 of 12)",14,54631231,54641364,10134,2,Cdh24-201,7615,Cdh24-201;Cdh24-202;Psmb11-201,Cdh24;Cdh24;Psmb11,0;0;8390,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,239096,ENSMUSG00000059674,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9052,cg00295725,-0.0000275,0.0000131,-2.095215905,0.036962906,loss,ns,0.0000807,0.0000223,3.62335074,0.000339719,pos,ns,0.008362659,0.006527518,1.28113907,0.201102361,pos,ns,0.69658283,-0.0000464,0.000224481,-0.206913901,0.836212943,neg,ns,0.402408086,Gm8863,Gm8863_Intergenic_downstream,9,46702529,46702578,46702529,46702530,50,-,CGATTGCAGCATTAGCTGGCTTTTTACATTCCCAGGCAGACAATGCAAGT,Distal Intergenic,9,46713233,46714158,926,2,Gm8863-201,11629,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,20,667890,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6160,cg25939793,0.0000555,0.0000107,5.193847549,0.000000374,gain,yes,-0.0000658,0.0000182,-3.622973095,0.000340195,neg,ns,0.003554327,0.005321355,0.667936571,0.50467105,pos,ns,0.296991607,-0.000364789,0.000183001,-1.993373635,0.047096672,neg,ns,0.223121285,Nrg2,Nrg2_Intron,18,36196122,36196171,36196122,36196123,50,-,CGCTACTGGGCTATGATGGCAGCTTTCCAGCCCCACATGCCATACATCAG,"Intron (Nrg2-203/Nrg2, intron 1 of 9)",18,36017652,36197380,179729,2,Nrg2-203,1209,Nrg2-203;Nrg2-201,Nrg2;Nrg2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,20,100042150,ENSMUSG00000060275,conserved gene and region,18,36196033,36196123,91,*,91,8,0.703296703,0.728728729,0.087912088,0.0000058,CpGisland,TRUE,U3,Pr-B
17178,cg13461045,-0.0000108,0.00000262,-4.106020541,0.0000515,loss,ns,-0.0000161,0.00000445,-3.622500863,0.000340791,neg,ns,-0.002518173,0.001303759,-1.931470483,0.05433624,neg,ns,1.264910419,-0.0000317,0.0000448,-0.707668041,0.479683114,neg,ns,0.941559983,Ash1l,Ash1l_Exon,3,89043222,89043271,89043222,89043223,50,-,CGAGCTGAGGAAAAAGGTTGGGGAATCAGAACCAAAGAGCCCCTAAAAGC,"Exon (Ash1l-202/Ash1l, exon 11 of 28)",3,88950622,89079375,128754,1,Ash1l-202,92600,Ash1l-202;Ash1l-201,Ash1l;Ash1l,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,5,192195,ENSMUSG00000028053,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10671,cg03338794,0.00000288,0.00000699,0.411849189,0.680734586,gain,ns,0.000043,0.0000119,3.622170624,0.000341209,pos,ns,0.010157595,0.003480383,2.918527827,0.003774212,pos,ns,2.42317375,-0.000160411,0.00011969,-1.340218938,0.181155618,neg,ns,0.746900571,Unc5a,Unc5a_Intergenic_upstream,13,54936298,54936347,54936346,54936347,50,-,TCCGCAAGATGGATTTTCCTGGCTGTGCCAATCTTGCTGCCACCTGTTCG,Distal Intergenic,13,54949411,55006018,56608,1,Unc5a-202,-13113,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,12,107448,ENSMUSG00000025876,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25073,cg15581312,-0.0000519,0.0000111,-4.691916401,0.00000407,loss,ns,-0.000068,0.0000188,-3.621875435,0.000341583,neg,ns,0.024784337,0.005501947,4.504648624,0.00000943,pos,ns,5.025558184,-0.001035889,0.000189211,-5.474768066,9.06E-08,neg,yes,0.806825214,Rbbp5,Rbbp5_Exon,1,132498080,132498129,132498080,132498081,50,-,CGAAGGGTAAAGTGCAGGCGGAACTCAGCCAGCCCTTGACAGGTAAGGAC,"Exon (Rbbp5-206/Rbbp5, exon 13 of 14)",1,132477365,132504490,27126,1,Rbbp5-206,20715,Rbbp5-206;Rbbp5-207;Rbbp5-202;Rbbp5-201,Rbbp5;Rbbp5;Rbbp5;Rbbp5,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,213464,ENSMUSG00000026439,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27479,cg09520301,0.000036,0.00000525,6.866667922,3.60E-11,gain,yes,-0.0000323,0.00000891,-3.619392414,0.000344742,neg,ns,-0.005265108,0.002611155,-2.016390081,0.044621331,neg,ns,1.350457477,0.000213781,0.0000898,2.380701944,0.017883607,pos,ns,0.921681526,Pbx1,Pbx1_Intron,1,168342097,168342146,168342097,168342098,50,-,CGAGACAGCCACCACGCGAGATGAAATAAACATGAGGACTGTCAGCAGTG,"Intron (Pbx1-208/Pbx1, intron 2 of 7)",1,168119364,168432270,312907,2,Pbx1-208,90124,Pbx1-208;Pbx1-205;Pbx1-206;Pbx1-201;Pbx1-202;Pbx1-204,Pbx1;Pbx1;Pbx1;Pbx1;Pbx1;Pbx1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,84,18514,ENSMUSG00000052534,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16225,cg04359093,0.00000486,0.00000255,1.90482474,0.057728162,gain,ns,0.0000157,0.00000434,3.618922084,0.000345343,pos,ns,0.00307228,0.001271094,2.417036656,0.016224421,pos,ns,1.789830782,-0.00000566,0.0000437,-0.1295208,0.897029565,neg,ns,0.936589803,Bnc2,Bnc2_Intron,4,84616014,84616063,84616062,84616063,50,-,TGCTCTTTGCAAATGTCATGTGTCCGCTTATCAGCACTCTAAGGAGTGCG,"Intron (Bnc2-201/Bnc2, intron 1 of 7)",4,84275095,84675034,399940,2,Bnc2-201,58971,Bnc2-201;Bnc2-202;Bnc2-214;Bnc2-215;Bnc2-206;Bnc2-211;Bnc2-217;Bnc2-207;Bnc2-203;Bnc2-209;Bnc2-204;Bnc2-210,Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,91,242509,ENSMUSG00000028487,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18729,cg05847151,-0.000134026,0.0000322,-4.161583584,0.000041,loss,ns,0.000197972,0.0000547,3.618379646,0.000346038,pos,ns,0.116818056,0.016029041,7.287900626,2.63E-12,pos,yes,11.57995792,-0.005420521,0.000551237,-9.833369541,4.87E-20,neg,yes,0.518177858,Gm12695,Gm12695_Intergenic_upstream,4,96969592,96969641,96969592,96969593,50,+,CGATATAGATTACCAGCCAAAATTAATTTAGGGTGCAGCTTTTTTGGAAA,Distal Intergenic,4,96723647,96785186,61540,2,Gm12695-201,-184406,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,4,620779,ENSMUSG00000078639,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2618,cg13649634,-0.00000901,0.00000739,-1.21949139,0.223584766,loss,ns,-0.0000454,0.0000126,-3.616787909,0.000348084,neg,ns,-0.005757684,0.003678481,-1.565234072,0.118548237,neg,ns,0.9261049,-0.000167278,0.000126503,-1.322325505,0.187034558,neg,ns,0.659320517,Zswim8,Zswim8_Exon,14,20722834,20722883,20722882,20722883,50,-,ACTACGTGCACCAGTTCTGTGTGGGGGCAGCCAAGGGGGTGCTGAGCCCG,"Exon (Zswim8-201/Zswim8, exon 25 of 26)",14,20707552,20723619,16068,1,Zswim8-201,15282,Ndst2-202;Ndst2-205;Ndst2-201;Ndst2-204;Ndst2-207;Zswim8-201;Zswim8-208;Zswim8-204;Zswim8-203;Zswim8-209;Zswim8-207;Zswim8-202;Zswim8-210;Zswim8-214,Ndst2;Ndst2;Ndst2;Ndst2;Ndst2;Zswim8;Zswim8;Zswim8;Zswim8;Zswim8;Zswim8;Zswim8;Zswim8;Zswim8,0;0;0;0;0;0;0;0;0;0;4233;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,13,14,268721,ENSMUSG00000021819,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17390,cg08434513,0.00000448,0.00000223,2.011733884,0.045112993,gain,ns,-0.0000137,0.00000378,-3.616398413,0.000348587,neg,ns,-0.001799325,0.001107757,-1.624294899,0.10532918,neg,ns,0.977451297,0.0000169,0.0000381,0.442649491,0.658327979,pos,ns,0.942647482,Ubap2l,Ubap2l_Exon,3,90009179,90009228,90009227,90009228,50,-,GGTGTAACTGTAGCCAGGAGGCAGCGCCGGGTTCAGGAATGTCTGCTGCG,"Exon (Ubap2l-215/Ubap2l, exon 23 of 27)",3,90000140,90052455,52316,2,Ubap2l-215,43227,Ubap2l-215;Ubap2l-201;Ubap2l-202;Ubap2l-208;Ubap2l-203;Ubap2l-211;Ubap2l-204;Ubap2l-220;Ubap2l-207,Ubap2l;Ubap2l;Ubap2l;Ubap2l;Ubap2l;Ubap2l;Ubap2l;Ubap2l;Ubap2l,0;0;0;0;0;0;0;0;7065,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,15,74383,ENSMUSG00000042520,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24823,cg06893666,-0.0000919,0.0000113,-8.152715779,8.91E-15,loss,yes,-0.0000692,0.0000192,-3.614711752,0.000350771,neg,ns,0.027002343,0.005611022,4.812374957,0.00000233,pos,ns,5.632014904,-0.001460099,0.000192963,-7.566748291,4.40E-13,neg,yes,0.751977777,Phc2,Phc2_Exon,4,128743442,128743491,128743442,128743443,50,-,CGGCACTGCCCCCCAGAATGGTGAGAATAAACCACCACAGGCCATTGTGA,"Exon (Phc2-201/Phc2, exon 10 of 15)",4,128654702,128752881,98180,1,Phc2-201,88740,Phc2-201;Phc2-203;Phc2-209;Phc2-202;Phc2-208;Phc2-205;Phc2-210;Phc2-204;Phc2-206,Phc2;Phc2;Phc2;Phc2;Phc2;Phc2;Phc2;Phc2;Phc2,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,13,54383,ENSMUSG00000028796,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6108,cg19093840,0.0000091,0.0000139,0.654526756,0.513257802,gain,ns,0.0000854,0.0000236,3.614511752,0.000351031,pos,ns,-0.004140727,0.006921375,-0.598252129,0.550108546,neg,ns,0.259551608,0.000494719,0.000238026,2.078427346,0.038492348,pos,ns,0.109851713,Rpl17-ps9,Rpl17-ps9_Intergenic_upstream,7,36071776,36071825,36071824,36071825,50,-,TGCAGCTGAGGCAATCAGTCAATTCAATCAAAAGCCTCCGTCAACTTGCG,Distal Intergenic,7,36118274,36118828,555,1,Rpl17-ps9-201,-46498,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,14,22,100043872,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26805,cg08040307,0.0000125,0.00000291,4.29962968,0.0000229,gain,ns,-0.0000179,0.00000494,-3.614444908,0.000351118,neg,ns,0.001294027,0.001447478,0.893987078,0.372022331,pos,ns,0.429430991,-0.00000601,0.0000498,-0.120636001,0.904057503,neg,ns,0.922853733,Zzz3,Zzz3_fiveUTR,3,152427304,152427353,152427304,152427305,50,+,CGTATTGTAGGGACTTGCCATAGTATGGCTGCTTCCCGATCTACTCGTGT,5' UTR,3,152395473,152459474,64002,1,Zzz3-204,31831,Zzz3-204;Zzz3-206;Zzz3-202;Zzz3-207;Zzz3-208;Zzz3-210;Zzz3-201;Zzz3-203,Zzz3;Zzz3;Zzz3;Zzz3;Zzz3;Zzz3;Zzz3;Zzz3,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,7,108946,ENSMUSG00000039068,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27583,cg17442116,-0.00000234,0.00000668,-0.349961212,0.726605451,loss,ns,0.000041,0.0000114,3.609439102,0.000357682,pos,ns,0.004899181,0.003326035,1.472979374,0.141771193,pos,ns,0.848412006,0.0000501,0.000114382,0.438147091,0.661584809,pos,ns,0.908263323,Zfp217,Zfp217_Intergenic_downstream,2,170072110,170072159,170072158,170072159,50,-,CATTCTGAAGTAATGAGGCATGGACAGAAAATATACCCCTCACATCATCG,Downstream (<1kb),2,170120333,170131220,10888,2,Zfp217-204,59110,Tshz2-203;Tshz2-205,Tshz2;Tshz2,0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,Intergenic_downstream,4,4,228913,ENSMUSG00000052056,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27096,cg12923877,-0.0000133,0.00000363,-3.653952532,0.000303145,loss,ns,-0.0000223,0.00000617,-3.608152536,0.000359388,neg,ns,-0.001637996,0.001807145,-0.90639977,0.365428267,neg,ns,0.437197861,-0.000015,0.0000621,-0.241849937,0.80905635,neg,ns,0.912760032,Srsf11,Srsf11_Exon,3,158024665,158024714,158024713,158024714,50,-,CTACAATTTAAAAATAGCAATGAGGCCCCTCACCAGTTAATTTTCATGCG,"Exon (Srsf11-203/Srsf11, exon 4 of 5)",3,158010473,158036639,26167,2,Srsf11-204,11925,Srsf11-204;Srsf11-213;Srsf11-202;Srsf11-207;Srsf11-201;Srsf11-217;Srsf11-218;Srsf11-206;Srsf11-209;Srsf11-210;Srsf11-212;Srsf11-203;Srsf11-208;Srsf11-215,Srsf11;Srsf11;Srsf11;Srsf11;Srsf11;Srsf11;Srsf11;Srsf11;Srsf11;Srsf11;Srsf11;Srsf11;Srsf11;Srsf11,0;0;0;-1525;0;-2661;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,8,69207,ENSMUSG00000055436,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5199,cg13531493,-0.0000603,0.00000814,-7.400552567,1.28E-12,loss,yes,-0.0000499,0.0000138,-3.606712612,0.000361306,neg,ns,0.010156409,0.004052138,2.506432479,0.012707445,pos,ns,1.895941775,-0.000475239,0.000139353,-3.41033154,0.000734775,neg,ns,0.84962163,Fbxw11,Fbxw11_threeUTR,11,32711916,32711965,32711916,32711917,50,-,CGAATGTGTCATTATCAGCATGGACATATTAACTCTTACCTGAAGCCCAT,3' UTR,11,32642724,32746569,103846,1,Fbxw11-203,69192,Fbxw11-203;Fbxw11-202;Fbxw11-201;Fbxw11-205,Fbxw11;Fbxw11;Fbxw11;Fbxw11,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,4,103583,ENSMUSG00000020271,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24175,cg20318183,0.000203415,0.0000206,9.883991272,3.32E-20,gain,yes,-0.000126097,0.000035,-3.606584742,0.000361476,neg,ns,0.046687678,0.01024299,4.558012751,0.00000744,pos,ns,5.128442523,-0.000419532,0.000352256,-1.190987996,0.234569412,neg,ns,0.42820248,Tnrc6a,Tnrc6a_threeUTR,7,123171089,123171138,123171089,123171090,50,-,CGTGTCCTGTCCAACTCTGGTTGGGGACAGACTCCTATTAAGCAGAATAC,3' UTR,7,123124177,123193987,69811,1,Tnrc6a-203,46912,Tnrc6a-203;Tnrc6a-201;Tnrc6a-210;Tnrc6a-206;Tnrc6a-205;Tnrc6a-202;Tnrc6a-211;Tnrc6a-204;Tnrc6a-207,Tnrc6a;Tnrc6a;Tnrc6a;Tnrc6a;Tnrc6a;Tnrc6a;Tnrc6a;Tnrc6a;Tnrc6a,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,TRUE,FALSE,threeUTR,5,24,233833,ENSMUSG00000052707,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13974,cg07361703,0.0000379,0.0000153,2.486070732,0.013442699,gain,ns,0.0000934,0.0000259,3.605417204,0.000363039,pos,ns,0.020716932,0.007590951,2.729161694,0.006712197,pos,ns,2.173135309,-0.000675568,0.000261052,-2.587864448,0.01011194,neg,ns,0.328307743,Hcfc1,Hcfc1_Promoter,X,73966944,73966993,73966944,73966945,50,-,CGCTCATGCCTCCTCCCTGGGAGCCGCCATCTTGTGTGAAGAAGTAACAA,Promoter (<=1kb),20,73942792,73966357,23566,2,Hcfc1-201,-636,Hcfc1-201;Hcfc1-202,Hcfc1;Hcfc1,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,4,15161,ENSMUSG00000031386,conserved gene but different region,X,73966821,73967069,249,*,249,19,0.59437751,0.867914144,0.076305221,1.44E-12,CpGisland,TRUE,U1,Pr-A
27224,cg20931542,-0.00000082,0.00000131,-0.626443695,0.53148497,loss,ns,0.00000802,0.00000222,3.605290898,0.000363209,pos,ns,0.001649597,0.000651572,2.531717151,0.011844344,pos,ns,1.926488993,-0.0000328,0.0000224,-1.463498465,0.144344237,neg,ns,0.966193438,Chd6,Chd6_Exon,2,161008506,161008555,161008506,161008507,50,-,CGCAGGTTTCCCCGTACTCGCCCATCAATTCGCTCATAGGTGTATCTGAG,"Exon (Chd6-201/Chd6, exon 17 of 37)",2,160946978,161109022,162045,2,Chd6-201,100467,Chd6-201;Chd6-204;Chd6-209;Chd6-207,Chd6;Chd6;Chd6;Chd6,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,8,71389,ENSMUSG00000057133,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14716,cg21155517,0.0000438,0.0000171,2.554948383,0.011097796,gain,ns,-0.000104851,0.0000291,-3.603702844,0.000365346,neg,ns,0.0807954,0.008523943,9.478642008,6.97E-19,pos,yes,18.15665721,-0.001680579,0.000293138,-5.73307104,2.34E-08,neg,yes,0.514992564,Zfp385b,Zfp385b_Exon,2,77450256,77450305,77450304,77450305,50,+,CTAGTGCTTTGACCTTCTTGGCATGTTTACTTCCTTTGTAGTGGGCCTCG,"Exon (Zfp385b-203/Zfp385b, exon 4 of 8)",2,77410634,77519618,108985,2,Zfp385b-203,69313,Zfp385b-203;Zfp385b-211;Zfp385b-201;Zfp385b-204;Zfp385b-209;Zfp385b-207,Zfp385b;Zfp385b;Zfp385b;Zfp385b;Zfp385b;Zfp385b,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,3,241494,ENSMUSG00000027016,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8387,cg00286137,0.000024,0.00000745,3.225173141,0.001393335,gain,ns,-0.0000456,0.0000127,-3.603274797,0.000365924,neg,ns,-0.00278347,0.003708668,-0.750531001,0.453504245,neg,ns,0.343418644,0.000157896,0.000127541,1.238002162,0.216652019,pos,ns,0.747963886,Zeb2,Zeb2_Intron,2,45083154,45083203,45083202,45083203,50,-,TAGGGTAGCCATCCGTTTCCTTTCAAAAATTTACAGGATTCTTAATCACG,"Intron (Zeb2-212/Zeb2, intron 3 of 10)",2,44983632,45117395,133764,2,Zeb2-212,34192,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18707,cg16184314,-0.00000185,0.00000339,-0.544665025,0.586375511,loss,ns,-0.0000207,0.00000575,-3.602049734,0.000367583,neg,ns,0.001065891,0.001686015,0.632195521,0.527725097,pos,ns,0.277592252,-0.000117438,0.000058,-2.025416912,0.043681093,neg,ns,0.852206778,Rnf115,Rnf115_threeUTR,3,96784986,96785035,96784986,96784987,50,-,CGTATAGGAGCGGGATGCTGCACTCCAACCCTGGGGACTATGCCTGGGGT,3' UTR,3,96727664,96791152,63489,1,Rnf115-201,57322,Rnf115-201;Rnf115-202;Rnf115-203,Rnf115;Rnf115;Rnf115,0;0;57147,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,2,67845,ENSMUSG00000028098,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1427,cg15957055,0.000169536,0.000028,6.056980006,4.01E-09,gain,yes,-0.000171267,0.0000476,-3.601717554,0.000368034,neg,ns,0.022891254,0.013930966,1.643192182,0.101357012,pos,ns,0.994146201,-0.001473781,0.000479085,-3.076241939,0.002283158,neg,ns,0.136683972,Cadps,Cadps_fiveUTR,14,12823042,12823091,12823090,12823091,50,-,CTGCTGAAGGAGGCGCCTCCAGAAAAGATGCCGAGTGTTGCAAGCTGTCG,Promoter (<=1kb),14,12372563,12823053,450491,2,Cadps-210,0,Cadps-210;Cadps-202;Cadps-203;Cadps-204;Cadps-201,Cadps;Cadps;Cadps;Cadps;Cadps,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,34,27062,ENSMUSG00000054423,mapped to different genes,14,12822717,12823224,508,*,508,45,0.667322835,0.834367472,0.088582677,5.95E-32,CpGisland,TRUE,U13,Hc-P
13952,cg14667271,0.000102332,0.0000163,6.272604634,1.19E-09,gain,yes,0.0000998,0.0000277,3.601610806,0.000368179,pos,ns,0.031307591,0.008119667,3.855772972,0.000140295,pos,ns,3.852958031,-0.000561503,0.000279235,-2.010862937,0.045205467,neg,ns,0.514548448,Slc6a8,Slc6a8_fiveUTR,X,73673539,73673588,73673539,73673540,50,-,CGACACACATGAGATTCTTCAGGCTCACTTTCAAGTGCTTCGTGGACTGC,Promoter (<=1kb),20,73673150,73682502,9353,1,Slc6a8-201,389,Slc6a8-201;Slc6a8-204;Slc6a8-206;Slc6a8-203;Slc6a8-205;Slc6a8-210;Slc6a8-213;Slc6a8-202;Slc6a8-209;Slc6a8-212,Slc6a8;Slc6a8;Slc6a8;Slc6a8;Slc6a8;Slc6a8;Slc6a8;Slc6a8;Slc6a8;Slc6a8,0;0;0;0;0;0;0;0;-3471;-4566,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,4,102857,ENSMUSG00000019558,mapped to different genes,X,73672917,73674047,1131,*,1131,123,0.714412025,0.852345416,0.108753316,5.71E-98,CpGisland,TRUE,U2,Pr-W
14059,cg05824380,0.0000936,0.0000125,7.46196103,8.66E-13,gain,yes,-0.0000767,0.0000213,-3.599465081,0.000371106,neg,ns,0.031267884,0.00624536,5.006578272,0.000000931,pos,ns,6.030956232,-0.001320775,0.000214777,-6.149503821,2.39E-09,neg,yes,0.484086447,Cnot9,Cnot9_Exon,1,74528780,74528829,74528828,74528829,50,+,CTTGCACAACTGGTGAAGAACCTGCAAGAGGGCCAGGTCACCGATCCCCG,"Exon (Cnot9-201/Cnot9, exon 8 of 8)",1,74506058,74530842,24785,1,Cnot9-201,22722,Cnot9-201;Cnot9-202;Cnot9-203;Usp37-205,Cnot9;Cnot9;Cnot9;Usp37,0;22720;5253;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,58184,ENSMUSG00000026174,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18801,cg26496796,0.0000741,0.00000626,11.83826868,6.28E-27,gain,yes,-0.0000383,0.0000106,-3.599226799,0.000371433,neg,ns,-0.003815706,0.003114232,-1.225247559,0.221412063,neg,ns,0.654798721,0.000124203,0.000107098,1.159707012,0.247060542,pos,ns,0.728393023,Arhgap23,Arhgap23_Exon,11,97463605,97463654,97463605,97463606,50,+,CGCTGACTTCTGTGAATATCTCTTTCAGGCTGAGGACCGGGATGACATGC,"Exon (Arhgap23-203/Arhgap23, exon 12 of 24)",11,97415533,97502402,86870,1,Arhgap23-203,48072,Arhgap23-203;Arhgap23-202;Arhgap23-204,Arhgap23;Arhgap23;Arhgap23,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,8,58996,ENSMUSG00000049807,mapped to different genes,11,97463388,97463699,312,*,312,36,0.692307692,0.98457223,0.115384615,4.29E-30,CpGisland,TRUE,U10,Tr-S
17835,cg17871185,-0.0000795,0.0000191,-4.170815351,0.0000394,loss,ns,0.000116476,0.0000324,3.598540525,0.000372374,pos,ns,0.020586759,0.009482597,2.171004278,0.030689298,pos,ns,1.51301305,-0.000798003,0.000326106,-2.44706746,0.014957263,neg,ns,0.579174067,Irx3,Irx3_Exon,8,91991910,91991959,91991958,91991959,50,-,AAAGTCTATAATAAAAAGGTCAACATCTCCTATTTTTCTGTACAGTGTCG,"Exon (Gm36670-201/Gm36670-201, exon 1 of 3)",8,91798525,91802067,3543,2,Irx3-202,-189892,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,16,36,16373,ENSMUSG00000031734,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24838,cg11416597,-0.00000466,0.00000216,-2.15254303,0.032126144,loss,ns,0.0000132,0.00000368,3.598104175,0.000372974,pos,ns,0.00165114,0.0010767,1.53351896,0.126167936,pos,ns,0.899051002,-0.0000413,0.000037,-1.114255116,0.266032895,neg,ns,0.03962637,Zfp362,Zfp362_Promoter,4,128805687,128805736,128805687,128805688,50,-,CGTTTATTTGCATTATGCCCCATGAATCATTGTTTACCGGAGAATTGCAG,Promoter (<=1kb),4,128773088,128806045,32958,2,Zfp362-202,309,Zfp362-202;Zfp362-204,Zfp362;Zfp362,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,1,7,230761,ENSMUSG00000028799,conserved gene and region,4,128805590,128806787,1198,*,1198,176,0.7721202,0.988949551,0.146911519,1.19E-166,CpGisland,TRUE,U1,Pr-A
12345,cg19002093,-0.0000417,0.00000584,-7.144473124,6.49E-12,loss,yes,0.0000357,0.00000992,3.596007679,0.000375869,pos,ns,0.008180654,0.002906288,2.814812191,0.005192841,pos,ns,2.284594936,-0.00026981,0.0000999,-2.69952732,0.007324872,neg,ns,0.826161238,Fign,Fign_threeUTR,2,63980832,63980881,63980880,63980881,50,+,GGTTGAGGTGATGTCAAAGTGCTGTTCTGGCCACTGGGCATGCTCTGGCG,3' UTR,2,63971507,64098012,126506,2,Fign-203,117131,Fign-203;Fign-201;Fign-202;Fign-204,Fign;Fign;Fign;Fign,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,14,84,60344,ENSMUSG00000075324,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10736,cg17118380,0.0000576,0.00000638,9.031745722,1.85E-17,gain,yes,-0.000039,0.0000108,-3.595947067,0.000375953,neg,ns,0.012888257,0.003176025,4.057983378,0.0000627,pos,ns,4.202665443,-0.000586885,0.000109223,-5.373263763,0.000000152,neg,yes,0.793401427,Coq10b,Coq10b_Exon,1,55067545,55067594,55067545,55067546,50,+,CGTTTTAGCCCAGGTCTTCCTGGCTACCCAAGAACTTGTACCTTGGATTT,"Exon (Coq10b-202/Coq10b, exon 3 of 4)",1,55052770,55071953,19184,1,Coq10b-202,14775,Coq10b-202;Coq10b-201;Gm17971-201,Coq10b;Coq10b;Gm17971,0;0;1281,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,67876,ENSMUSG00000025981,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7230,cg06439928,-0.0000297,0.0000191,-1.555358097,0.120881097,loss,ns,0.000116663,0.0000324,3.595945421,0.000375955,pos,ns,0.024598718,0.009504674,2.588065332,0.010106172,pos,ns,1.995413307,-0.00056718,0.000326865,-1.735213402,0.083696816,neg,ns,0.796856538,Gria3,Gria3_threeUTR,X,41676432,41676481,41676432,41676433,50,-,CGGGCATGACACGAATATTGCTGATGGTGCAATGACCTTTCAATAGGAAA,3' UTR,20,41401128,41676585,275458,1,Gria3-202,275304,Gria3-202;Gria3-201;Gria3-208;Gria3-206;Gria3-209,Gria3;Gria3;Gria3;Gria3;Gria3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,26,53623,ENSMUSG00000001986,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14786,cg11589094,0.000187576,0.0000159,11.77952388,1.02E-26,gain,yes,-0.0000973,0.0000271,-3.595360742,0.000376767,neg,ns,0.062434916,0.007925476,7.877749439,5.68E-14,pos,yes,13.24564092,-0.000965162,0.000272556,-3.541146494,0.000459561,neg,ns,0.428754949,Gm11146,Gm11146_Intron,16,77662267,77662316,77662267,77662268,50,-,CGTAAGTTATTGAACTGAGACTGGCTTTTGGTTTAGCAGATAATTAGGTT,"Intron (Mir99ahg-211/Mir99ahg-211, intron 5 of 6)",16,77588578,77602094,13517,2,Gm11146-201,-60222,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,21,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9763,cg05564036,-0.0000083,0.00000316,-2.627071875,0.009040421,loss,ns,0.0000193,0.00000537,3.595325224,0.000376816,pos,ns,0.003472627,0.001573244,2.207303546,0.02802519,pos,ns,1.552451433,-0.000122036,0.0000541,-2.255598753,0.024792733,neg,ns,0.943740329,Gm45386,Gm45386_Intergenic_upstream,8,50708562,50708611,50708562,50708563,50,+,CGCTTGACCCATAAAAGAAACGGCAGGAAACCTGAAATGAAGGCATTATC,Distal Intergenic,8,51137630,51137847,218,1,Gm45386-201,-429019,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20329,cg10918927,0.0000888,0.00000687,12.93722715,6.60E-31,gain,yes,-0.0000419,0.0000117,-3.595151548,0.000377057,neg,ns,0.004666667,0.003417694,1.365443373,0.173103711,pos,ns,0.761693621,-0.0000183,0.000117534,-0.156103482,0.876053059,neg,ns,0.238609523,Hoxc5,Hoxc5_Exon,15,102998766,102998815,102998766,102998767,50,+,CGCTCGGTAAGTGTTTCCTTATTGGTTCAAATATGTAACTAATGGTCCGT,"Exon (Hoxc6-202/Hoxc6, exon 1 of 3)",15,102967443,103015676,48234,1,Hoxc5-202,31323,Hoxc5-202;Hoxc6-202;Hoxc6-203;Hoxc8-201;Hoxc8-202,Hoxc5;Hoxc6;Hoxc6;Hoxc8;Hoxc8,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,72,134,15424,ENSMUSG00000022485,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
1002,cg09509790,0.0000018,0.0000161,0.112239495,0.910706156,gain,ns,0.0000981,0.0000273,3.592573582,0.000380656,pos,ns,0.03341569,0.007998996,4.17748547,0.0000384,pos,ns,4.416068905,-0.000728537,0.000275085,-2.648408525,0.008501147,neg,ns,0.37814292,Tspan7,Tspan7_Exon,X,10485165,10485214,10485165,10485166,50,-,CGAGGAGAATGGAGACCAAACCTGTGATAACCTGTCTCAAAACCCTCCTC,Promoter (<=1kb),20,10485158,10596605,111448,1,Tspan7-201,7,Tspan7-201;Tspan7-202;Tspan7-203,Tspan7;Tspan7;Tspan7,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,21912,ENSMUSG00000058254,conserved gene and region,X,10485001,10485166,166,*,166,28,0.807228916,1.125968992,0.168674699,6.87E-29,CpGisland,TRUE,U9,En-Pp
22394,cg04569181,0.0000421,0.0000156,2.700612437,0.007301577,gain,ns,0.0000951,0.0000265,3.592431472,0.000380856,pos,ns,0.015253654,0.007754745,1.967009038,0.050073743,pos,ns,1.300389943,-0.00027797,0.000266685,-1.042315418,0.298077636,neg,ns,0.79789536,Gjd2,Gjd2_Exon,2,114011808,114011857,114011856,114011857,50,+,TACAGCCGGGCTGCAGGGTGTTGCACACAAACATGGTCTGCTCATCATCG,"Exon (Gjd2-201/Gjd2, exon 2 of 2)",2,114009601,114013619,4019,2,Gjd2-201,1762,Gjd2-201,Gjd2,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,14617,ENSMUSG00000068615,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22562,cg09439840,-0.00000562,0.00000332,-1.692491088,0.091557111,loss,ns,-0.0000203,0.00000564,-3.591896639,0.000381607,neg,ns,-0.003767446,0.001653591,-2.278341794,0.023386356,neg,ns,1.631037446,0.000175041,0.0000569,3.078077038,0.002269564,pos,ns,0.883477021,Mlec,Mlec_Exon,5,115147948,115147997,115147996,115147997,50,-,GAAGACTCCGAAGGCCACCAGGATGGGAAACATGAGGCTGCTGTTGTCCG,"Exon (Mlec-201/Mlec, exon 5 of 5)",5,115142981,115158179,15199,2,Mlec-201,10182,Mlec-201;Mlec-202,Mlec;Mlec,0;3049,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,109154,ENSMUSG00000048578,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22324,cg24403549,-0.0000597,0.00000994,-6.001833189,5.44E-09,loss,yes,0.0000606,0.0000169,3.591112114,0.000382711,pos,ns,-0.002389781,0.004947366,-0.483041007,0.629407578,neg,ns,0.201068033,-0.000119636,0.00017014,-0.703164551,0.482480949,neg,ns,0.612343317,Gzmk,Gzmk_Intron,13,113209565,113209614,113209613,113209614,50,-,ATAACAGATGACATCAGCTTGGGCTTTTCAATTCCTGGATGGCAGCAGCG,"Intron (Gzmk-202/Gzmk, intron 2 of 5)",13,113171608,113225908,54301,2,Gzmk-202,16294,Esm1-201;Gzmk-202,Esm1;Gzmk,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,2,14945,ENSMUSG00000042385,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13066,cg08985228,0.000000933,0.00000254,0.367290952,0.713652612,gain,ns,-0.0000155,0.00000431,-3.59051761,0.00038355,neg,ns,-0.002206857,0.00126365,-1.746415092,0.081729334,neg,ns,1.08762204,-0.0000173,0.0000435,-0.398068396,0.690853768,neg,ns,0.939687983,Nemf,Nemf_Exon,12,69354720,69354769,69354768,69354769,50,-,ACACCAAGCTGTTTTGCACTGACTAATCTCCGACTCTTCAAATGTTTTCG,"Exon (Nemf-201/Nemf, exon 4 of 33)",12,69310522,69357165,46644,2,Nemf-201,2396,Nemf-201;Nemf-203;Nemf-212;Nemf-202;Nemf-204;Nemf-210,Nemf;Nemf;Nemf;Nemf;Nemf;Nemf,0;0;0;0;-651;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,66244,ENSMUSG00000020982,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4973,cg23689487,0.0000178,0.00000256,6.944460369,2.24E-11,gain,yes,-0.0000156,0.00000436,-3.589688043,0.000384723,neg,ns,0.000356098,0.001276005,0.279072584,0.780375206,pos,ns,0.107696537,-0.0000411,0.0000439,-0.937453569,0.349255065,neg,ns,0.063782134,Prdm12,Prdm12_Exon,2,31635948,31635997,31635948,31635949,50,+,CGATCTGCCCTCCAGGGTGGATTTTCCCCCGGCAGATGTTTCGGGAGGAG,Promoter (4-5kb),2,31640037,31655795,15759,1,Prdm12-201,-4040,Prdm12-201,Prdm12,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,10,381359,ENSMUSG00000079466,conserved gene but different region,2,31635705,31636030,326,*,326,27,0.662576687,0.755666209,0.082822086,1.36E-18,CpGisland,TRUE,U3,Pr-B
16951,cg25997426,-0.0000154,0.00000421,-3.655530768,0.000301363,loss,ns,0.0000257,0.00000716,3.588054673,0.000387044,pos,ns,0.009880713,0.002096192,4.713648243,0.00000368,pos,ns,5.433989469,-0.00022843,0.0000721,-3.168772502,0.00168357,neg,ns,0.889658351,Mtmr4,Mtmr4_threeUTR,11,87616184,87616233,87616232,87616233,50,-,GTGGGTGTAAGTGACATGATGTGGCCAAAAATCCAAACTGTGCAGTTGCG,3' UTR,11,87592162,87616302,24141,1,Mtmr4-202,24022,Hsf5-201;Mtmr4-202;Mtmr4-201;Mtmr4-203,Hsf5;Mtmr4;Mtmr4;Mtmr4,-931;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,2,170749,ENSMUSG00000018401,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16049,cg21637344,-0.000000282,0.00000307,-0.091683046,0.927009084,loss,ns,-0.0000187,0.00000522,-3.587935207,0.000387214,neg,ns,-0.004904239,0.001528694,-3.208122934,0.001475774,neg,ns,2.830980235,0.0000564,0.0000526,1.072141449,0.284490439,pos,ns,0.935826856,Tmem161b,Tmem161b_Intron,13,84285414,84285463,84285414,84285415,50,-,CGCTGTGGGCTGCTCCTTGATACTAGAGTGTTCCCTAGCAACACTGCATA,"Intron (Tmem161b-201/Tmem161b, intron 8 of 11)",13,84222300,84296141,73842,1,Tmem161b-201,63114,Gm46432-201;Tmem161b-204;Tmem161b-201;Tmem161b-203;Tmem161b-202;Tmem161b-206;Tmem161b-209,Gm46432;Tmem161b;Tmem161b;Tmem161b;Tmem161b;Tmem161b;Tmem161b,-3598;63118;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,2,72745,ENSMUSG00000035762,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23492,cg13689075,-0.0000232,0.0000108,-2.155407876,0.031899444,loss,ns,0.0000655,0.0000183,3.585434923,0.000390792,pos,ns,0.005170917,0.005354219,0.965764913,0.334914628,pos,ns,0.475065884,-0.0000974,0.000184131,-0.528979998,0.597197873,neg,ns,0.707531623,Cacna1c,Cacna1c_Exon,6,118654328,118654377,118654328,118654329,50,-,CGAAGATGTTCATCATGAAGAAGGCGATGATGATGATGTAGATGATGAAG,"Exon (Cacna1c-207/Cacna1c, exon 27 of 47)",6,118587240,119196231,608992,2,Cacna1c-207,541854,Cacna1c-207;Cacna1c-205;Cacna1c-215;Cacna1c-224;Cacna1c-225;Cacna1c-226;Cacna1c-227;Cacna1c-202;Cacna1c-201;Cacna1c-203;Cacna1c-212;Cacna1c-216;Cacna1c-210;Cacna1c-206;Cacna1c-208;Cacna1c-213;Cacna1c-217;Cacna1c-219;Cacna1c-220;Cacna1c-209;Cacna1c-204;Cacna1c-214;Cacna1c-222,Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,13,15,12288,ENSMUSG00000051331,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26815,cg25361894,-0.0000179,0.00000721,-2.480840403,0.01363756,loss,ns,0.0000439,0.0000122,3.5848356,0.000391655,pos,ns,0.001486644,0.003586573,0.414502551,0.678792776,pos,ns,0.168262788,-0.000158952,0.000123342,-1.288713024,0.198458775,neg,ns,0.727719654,Rem1,Rem1_Intergenic_downstream,2,152636861,152636910,152636861,152636862,50,-,CGGGAGAGTGGAAAAAATGATATCAAACCCGGAAAAATGCAGGCCGGATG,Downstream (1-2kb),2,152632967,152635198,2232,1,Rem1-202,3943,Rem1-201;Rem1-202,Rem1;Rem1,9910;3894,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,2,2,19700,ENSMUSG00000000359,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
24413,cg25516699,-0.00000334,0.0000101,-0.331364096,0.740593372,loss,ns,0.0000613,0.0000171,3.584822327,0.000391674,pos,ns,0.005293594,0.005009427,1.056726465,0.291459235,pos,ns,0.53542218,0.0000309,0.000172274,0.179342733,0.857785757,pos,ns,0.572504648,Grik3,Grik3_Intron,4,125493646,125493695,125493646,125493647,50,-,CGAGAAAAAATGATCATTGATTATTTTATGTGAATATGTGGAAGATGTAT,"Intron (Grik3-201/Grik3, intron 1 of 15)",4,125490700,125714173,223474,1,Grik3-201,2946,Grik3-201,Grik3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,14,18,14807,ENSMUSG00000001985,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
22852,cg20253437,0.0000089,0.00000166,5.369343958,0.000000155,gain,yes,-0.0000101,0.00000282,-3.584797908,0.000391709,neg,ns,-0.00041242,0.000824781,-0.500035868,0.617404578,neg,ns,0.209430154,-0.0000394,0.0000284,-1.389410667,0.165705031,neg,ns,0.035901575,Sox6,Sox6_Intron,7,116032661,116032710,116032709,116032710,50,+,TTTAATTTATGGCTTATGCATTCTTTTAAGGTCGATTTACATGACCTCCG,"Intron (Sox6-204/Sox6, intron 1 of 15)",7,115471344,116038744,567401,2,Sox6-204,6034,Sox6-210;Sox6-202;Sox6-204;Sox6-209;Sox6-214;Sox6-208,Sox6;Sox6;Sox6;Sox6;Sox6;Sox6,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,37,57,20679,ENSMUSG00000051910,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24496,cg22426869,0.000037,0.0000139,2.666135068,0.008075293,gain,ns,0.0000844,0.0000236,3.584369348,0.000392327,pos,ns,0.004825744,0.00690138,0.699243292,0.484924307,pos,ns,0.314326046,0.000161793,0.000237338,0.681697719,0.495939078,pos,ns,0.757277985,Kcna1,Kcna1_Exon,6,126642261,126642310,126642309,126642310,50,+,CCACCAGAAAGCATCGGGGATACTGGAGAAGTGCGACTCAGCTTCTTCCG,"Exon (Kcna1-201/Kcna1, exon 2 of 2)",6,126640397,126644796,4400,2,Kcna1-201,2486,Kcna1-201;Kcna1-202;Kcna1-203,Kcna1;Kcna1;Kcna1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,12,16485,ENSMUSG00000047976,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
18375,cg04860674,-0.00000639,0.00000608,-1.05180572,0.29370788,loss,ns,0.000037,0.0000103,3.583304974,0.000393865,pos,ns,0.000710058,0.003026006,0.2346518,0.814633912,pos,ns,0.089037515,0.0000129,0.000104064,0.124141651,0.901283576,pos,ns,0.562239964,Slc9a9,Slc9a9_Intron,9,94910866,94910915,94910914,94910915,50,+,TCGCCATGGCAACAGCTGCAGCTACTTATTACAGAGCAGTGGAAATGACG,"Intron (Slc9a9-201/Slc9a9, intron 6 of 15)",9,94669909,95230445,560537,1,Slc9a9-201,240957,Slc9a9-201,Slc9a9,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,3,331004,ENSMUSG00000031129,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8887,cg00638788,0.0000542,0.00000428,12.65480071,7.12E-30,gain,yes,-0.0000261,0.00000728,-3.582352743,0.000395247,neg,ns,0.003067648,0.002131844,1.438964221,0.151169556,pos,ns,0.820535662,-0.000140237,0.0000733,-1.912824337,0.056691739,neg,ns,0.883366725,Gbf1,Gbf1_Exon,19,46254597,46254646,46254645,46254646,50,+,GGTGCAGCTGCTCTTCACAAGGTAAACCTGCTGCTGTTTGCTTCAGCCCG,"Exon (Gbf1-201/Gbf1, exon 7 of 40)",19,46152509,46286510,134002,1,Gbf1-201,102088,Gbf1-201;Gbf1-204;Gbf1-214;Gbf1-213;Gbf1-210,Gbf1;Gbf1;Gbf1;Gbf1;Gbf1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,18,107338,ENSMUSG00000025224,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26553,cg09579869,0.0000275,0.0000053,5.182844766,0.000000395,gain,yes,-0.0000323,0.000009,-3.581903656,0.000395899,neg,ns,-0.003297738,0.00263816,-1.250014555,0.212237048,neg,ns,0.673178803,0.0000747,0.0000907,0.823508279,0.410852089,pos,ns,0.85787415,Casz1,Casz1_Intron,4,148916024,148916073,148916024,148916025,50,-,CGTTTATGTCACTTTAATCTCCTTACAGCGGCTGCTGTGCATTTGTTTGA,"Intron (Casz1-201/Casz1, intron 4 of 15)",4,148804429,148945129,140701,1,Casz1-201,111595,Casz1-201;Casz1-202;Casz1-206,Casz1;Casz1;Casz1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,94,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16017,cg26958154,0.0000542,0.00000913,5.939174969,7.68E-09,gain,yes,-0.0000555,0.0000155,-3.581663854,0.000396249,neg,ns,0.028370518,0.004543489,6.244213481,1.40E-09,pos,ns,8.853592419,-0.000420454,0.00015625,-2.690901333,0.007512448,neg,ns,0.728253758,Pid1,Pid1_Intron,1,84211617,84211666,84211665,84211666,50,-,CAAGCAAACTGTCCATTCAGCAGTTCTGCAGGCTACTGTTTCACCATGCG,"Intron (Pid1-201/Pid1, intron 1 of 2)",1,84036296,84284645,248350,2,Pid1-201,72979,Pid1-201;Pid1-204;Pid1-205;Pid1-203;Pid1-206;Pid1-207,Pid1;Pid1;Pid1;Pid1;Pid1;Pid1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,98496,ENSMUSG00000045658,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27118,cg08918292,0.00000442,0.0000193,0.229266888,0.818812673,gain,ns,-0.000117172,0.0000327,-3.581046745,0.000397148,neg,ns,-0.030024751,0.009585892,-3.13218122,0.001900749,neg,ns,2.721075131,0.00106917,0.000329658,3.243271148,0.001310512,pos,ns,0.621939191,Slc32a1,Slc32a1_Exon,2,158602851,158602900,158602899,158602900,50,+,TAGTTCCCTTAATTGCCTTTTTATAGCACGTCGTACAACTGTTCATTACG,Promoter (7-8kb),2,158610767,158615748,4982,1,Slc32a1-201,-7867,NA,NA,NA,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,22348,ENSMUSG00000037771,conserved gene but different region,2,158602879,158602992,114,*,114,10,0.614035088,0.981912145,0.087719298,0.000000223,CpGisland,TRUE,U11,Tr-P
20535,cg26846067,-0.000114906,0.000016,-7.170796794,5.50E-12,loss,yes,-0.0000975,0.0000272,-3.579946392,0.000398757,neg,ns,0.017119534,0.007975375,2.146549048,0.03260495,pos,ns,1.486716463,-0.00139524,0.000274272,-5.087056706,0.000000631,neg,yes,0.423975781,Fam181a,Fam181a_Intron,12,103314011,103314060,103314011,103314012,50,+,CGTTGGCACGGTGACAGTAGCCAAGTGTGCAAACTTGTCCCATTGTCCGC,"Intron (Fam181a-203/Fam181a, intron 1 of 1)",12,103310975,103317065,6091,1,Fam181a-203,3036,Fam181a-203;Fam181a-202;Fam181a-201,Fam181a;Fam181a;Fam181a,0;-893;-899,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,9,100504156,ENSMUSG00000096753,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5194,cg27566689,-0.000017,0.00000553,-3.077744863,0.00227202,loss,ns,-0.0000336,0.00000939,-3.57753823,0.0004023,neg,ns,0.00699102,0.002752084,2.540264499,0.01156462,pos,ns,1.936868647,-0.000321247,0.0000946,-3.394272133,0.000777588,neg,ns,0.847084665,Tnk2,Tnk2_Exon,16,32679823,32679872,32679823,32679824,50,-,CGACGTGGCCCAGGATGAGGATGACTTTGAGATCTGCTCCATCAACAGCA,"Exon (Tnk2-207/Tnk2, exon 12 of 15)",16,32644506,32683493,38988,1,Tnk2-207,35317,Tnk2-207;Tnk2-205;Tnk2-206;Tnk2-204;Tnk2-222;Tnk2-219;Tnk2-221;Tnk2-210;Tnk2-218;Tnk2-203;Tnk2-201;Tnk2-209;Tnk2-223;Tnk2-202;Tnk2-216;Tnk2-213;Tnk2-224;Tnk2-220;Tnk2-217,Tnk2;Tnk2;Tnk2;Tnk2;Tnk2;Tnk2;Tnk2;Tnk2;Tnk2;Tnk2;Tnk2;Tnk2;Tnk2;Tnk2;Tnk2;Tnk2;Tnk2;Tnk2;Tnk2,0;0;0;0;0;0;0;11587;10430;6669;0;6645;6640;0;6628;0;0;0;-942,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,Exon,1,1,51789,ENSMUSG00000022791,conserved gene but different region,16,32679743,32679827,85,*,85,9,0.705882353,0.91507177,0.105882353,0.000000223,CpGisland,TRUE,U10,Tr-S
18289,cg16170567,0.0000171,0.000004,4.280828608,0.0000249,gain,ns,-0.0000243,0.00000679,-3.577264262,0.000402704,neg,ns,0.0089678,0.001990305,4.505740764,0.00000938,pos,ns,5.027654116,-0.000332076,0.0000684,-4.851613549,0.00000194,neg,ns,0.905994034,Dyrk1a,Dyrk1a_Exon,16,94691986,94692035,94692034,94692035,50,-,GGACAGAATGGAGCTATGGACGTTAATTTGACCGTCTACTCCAATCCCCG,"Exon (Dyrk1a-202/Dyrk1a, exon 12 of 12)",16,94570010,94695067,125058,1,Dyrk1a-202,121976,Dyrk1a-202;Dyrk1a-203;Dyrk1a-201,Dyrk1a;Dyrk1a;Dyrk1a,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,14,13548,ENSMUSG00000022897,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18099,cg01434367,-0.0000224,0.0000164,-1.365345839,0.173134319,loss,ns,0.0000995,0.0000278,3.577089947,0.000402962,pos,ns,0.016148502,0.008148989,1.981657147,0.048400695,pos,ns,1.315148403,-0.000119621,0.000280243,-0.426847601,0.669786621,neg,ns,0.304717723,Gnao1,Gnao1_Exon,8,93812854,93812903,93812854,93812855,50,-,CGTGCACACACAGCTCCTAATTAGGGGTTGCTGTGCAGTAAACAAAAATG,"Exon (4930488L21Rik-202/4930488L21Rik-202, exon 1 of 3)",8,93809966,93950403,140438,1,Gnao1-206,2888,Gnao1-206;Gnao1-202;Gnao1-201;Gnao1-203;Gnao1-207,Gnao1;Gnao1;Gnao1;Gnao1;Gnao1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,13,14681,ENSMUSG00000031748,mapped to different genes,8,93812682,93812855,174,*,174,14,0.649425287,0.776785714,0.08045977,1.09E-09,CpGisland,TRUE,U13,Hc-P
325,cg03784958,0.0000301,0.0000189,1.595497567,0.111619935,gain,ns,0.000114689,0.0000321,3.575913153,0.000404707,pos,ns,0.011549597,0.009396207,1.229176559,0.219937794,pos,ns,0.657700136,-0.000311259,0.000323135,-0.963248089,0.336173809,neg,ns,0.661758473,Klhl29,Klhl29_Intron,12,5119379,5119428,5119427,5119428,50,+,TGGCAACACAATAGATCATAGTAAAAATGCACCGACAAGCGATGTGTCCG,"Intron (Klhl29-201/Klhl29, intron 5 of 13)",12,5077472,5375682,298211,2,Klhl29-201,256254,Klhl29-201;Klhl29-202,Klhl29;Klhl29,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,23,208439,ENSMUSG00000020627,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22296,cg26019380,-0.0000391,0.00000954,-4.097322157,0.0000534,loss,ns,-0.0000579,0.0000162,-3.575400112,0.00040547,neg,ns,0.006648764,0.004746273,1.400839074,0.162262401,pos,ns,0.789782103,-0.000339165,0.000163224,-2.077912922,0.038540054,neg,ns,0.740317408,Setd5,Setd5_fiveUTR,6,113105047,113105096,113105047,113105048,50,+,CGTCATGAGCATTGCAATCCCTCTGGGAGTCACCACATCAGATACATCCT,5' UTR,6,113077365,113107561,30197,1,Setd5-209,27682,Setd5-209;Setd5-201;Setd5-206;Setd5-205;Setd5-203;Setd5-212;Setd5-202;Setd5-204;Setd5-210,Setd5;Setd5;Setd5;Setd5;Setd5;Setd5;Setd5;Setd5;Setd5,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,19,72895,ENSMUSG00000034269,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5021,cg19665414,0.0000248,0.00000307,8.080672985,1.45E-14,gain,yes,-0.0000186,0.00000521,-3.573662053,0.000408064,neg,ns,-0.001110946,0.001527048,-0.727512131,0.467461372,neg,ns,0.330254271,0.000153467,0.0000525,2.922338917,0.003729571,pos,ns,0.928622623,Nrg1,Nrg1_threeUTR,8,31837665,31837714,31837665,31837666,50,-,CGTACTGTAGAAGCTGGCCATTACGTAGTTTTGGCAGCGATCACCAGTAA,3' UTR,8,31814551,32009540,194990,2,Nrg1-203,171826,Nrg1-203;Nrg1-202;Nrg1-218;Nrg1-219;Nrg1-213;Nrg1-206;Nrg1-201;Nrg1-214;Nrg1-210;Nrg1-224;Nrg1-231;Nrg1-221;Nrg1-233;Nrg1-208;Nrg1-212;Nrg1-211;Nrg1-205;Nrg1-227;Nrg1-226;Nrg1-209;Nrg1-216;Nrg1-217;Nrg1-232;Nrg1-223;Nrg1-220;Nrg1-225;Nrg1-230;Nrg1-204;Nrg1-229;Nrg1-228,Nrg1;Nrg1;Nrg1;Nrg1;Nrg1;Nrg1;Nrg1;Nrg1;Nrg1;Nrg1;Nrg1;Nrg1;Nrg1;Nrg1;Nrg1;Nrg1;Nrg1;Nrg1;Nrg1;Nrg1;Nrg1;Nrg1;Nrg1;Nrg1;Nrg1;Nrg1;Nrg1;Nrg1;Nrg1;Nrg1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,5,211323,ENSMUSG00000062991,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15915,cg08399485,-0.000073,0.000017,-4.283572697,0.0000246,loss,ns,0.00010337,0.0000289,3.572576452,0.000409692,pos,ns,-0.001874711,0.00847679,-0.221158168,0.825114879,neg,ns,0.083485582,0.00039115,0.000291516,1.341778386,0.18064986,pos,ns,0.541636528,Gm5452,Gm5452_Intron,13,83869038,83869087,83869038,83869039,50,-,CGCTATTACTGATATGTTTCCTTGGTTTGTGGTTTTCTGTGAAAGGCAGG,"Intron (C130071C03Rik-204/C130071C03Rik-204, intron 3 of 3)",13,83832340,83833336,997,1,Gm5452-201,36747,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,16,432789,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
416,cg26391562,-0.000124657,0.000011,-11.3036772,4.87E-25,loss,yes,0.0000669,0.0000187,3.57248618,0.000409828,pos,ns,0.016243164,0.005488757,2.959352137,0.003320443,pos,ns,2.478803973,-0.000587284,0.000188758,-3.111308931,0.002035932,neg,ns,0.253258396,Zeb1,Zeb1_Intron,18,5593975,5594024,5593975,5593976,50,-,CGCCAGAGAAAGGGGCTTTTCTTGTTGCTGACGACATGTGTGTGACATGT,"Intron (Zeb1-212/Zeb1, intron 1 of 2)",18,5591860,5641385,49526,1,Zeb1-212,2115,Zeb1-212;Zeb1-201;Zeb1-204;Zeb1-202;Zeb1-209;Zeb1-206;Zeb1-208;Zeb1-205;Zeb1-211;Zeb1-207,Zeb1;Zeb1;Zeb1;Zeb1;Zeb1;Zeb1;Zeb1;Zeb1;Zeb1;Zeb1,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,7,21417,ENSMUSG00000024238,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U4,Pr-F
27433,cg17097250,-0.00000373,0.00000673,-0.554425524,0.579687412,loss,ns,-0.0000408,0.0000114,-3.572005914,0.00041055,neg,ns,-0.004577994,0.003350337,-1.366428083,0.172794923,neg,ns,0.762469021,0.000159273,0.000115218,1.38236613,0.167854428,pos,ns,0.822056805,Pbx1,Pbx1_threeUTR,1,168158607,168158656,168158655,168158656,50,-,TCTTATTGTGTTTGCTGATTGCTTCGACCTCCAGTCTGACCGCTTCAGCG,3' UTR,1,168119364,168432270,312907,2,Pbx1-208,273614,Pbx1-208;Pbx1-205;Pbx1-206;Pbx1-203;Pbx1-201,Pbx1;Pbx1;Pbx1;Pbx1;Pbx1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,84,18514,ENSMUSG00000052534,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16491,cg13611779,0.00000188,0.00000316,0.596083373,0.551554513,gain,ns,0.0000192,0.00000536,3.571897169,0.000410714,pos,ns,0.001242122,0.001571707,0.790301047,0.42995611,pos,ns,0.366575875,0.0000542,0.0000541,1.002912977,0.316685039,pos,ns,0.952865887,Dmd,Dmd_Exon,X,85177846,85177895,85177846,85177847,50,+,CGTCAACACAAAGGCCGCCTGGAAGCCAGGATGCAAATCCTGGAAGACCA,"Exon (Dmd-203/Dmd, exon 75 of 79)",20,82948903,85206141,2257239,1,Dmd-203,2228943,Dmd-203;Dmd-215;Dmd-214;Dmd-202;Dmd-201;Dmd-204,Dmd;Dmd;Dmd;Dmd;Dmd;Dmd,0;0;0;0;0;-41,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,20,28,13405,ENSMUSG00000045103,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5529,cg11899916,0.0000683,0.0000143,4.764238665,0.00000292,gain,ns,-0.000087,0.0000244,-3.571207588,0.000411754,neg,ns,-0.01309802,0.007136249,-1.835420905,0.067401195,neg,ns,1.171332407,-0.000273813,0.000245415,-1.115715413,0.265408088,neg,ns,0.655848099,Hdac9,Hdac9_Intron,12,34200274,34200323,34200274,34200275,50,-,CGCACTTTTCAAATCCAAGCTCAAACAAGAAAGCCAAGGCCTTCTGGATT,"Intron (Hdac9-205/Hdac9, intron 20 of 24)",12,34047580,34528328,480749,2,Hdac9-205,328005,Hdac9-205;Hdac9-204;Hdac9-206;Hdac9-210;Hdac9-207,Hdac9;Hdac9;Hdac9;Hdac9;Hdac9,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,19,31,79221,ENSMUSG00000004698,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2695,cg22997701,0.00006,0.0000219,2.740443556,0.006491389,gain,ns,-0.000132717,0.0000372,-3.570585068,0.000412694,neg,ns,0.091104557,0.010889434,8.366326315,2.05E-15,pos,yes,14.68728093,-0.001296859,0.000374487,-3.463029888,0.000609245,neg,ns,0.674697044,Aldh8a1,Aldh8a1_Exon,10,21395494,21395543,21395542,21395543,50,-,TGCTTCCCACGGTGATAACAGACATTAAGGATGAATCCTGCTGCATGACG,"Exon (Aldh8a1-201/Aldh8a1, exon 7 of 7)",10,21377291,21396585,19295,1,Aldh8a1-201,18203,Aldh8a1-201,Aldh8a1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,237320,ENSMUSG00000037542,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25050,cg25918810,0.0000138,0.00000388,3.551085272,0.000443207,gain,ns,-0.0000235,0.00000659,-3.568797653,0.000415407,neg,ns,-0.000745042,0.001929827,-0.386066893,0.699711951,neg,ns,0.155080708,-0.000359216,0.0000664,-5.412604115,0.000000125,neg,yes,0.933057887,Slc41a1,Slc41a1_Exon,1,131846553,131846602,131846601,131846602,50,-,CTGATTCTCCTGTACATCGCAGACTGGATGGTGCACTGGATGTGGGGCCG,"Exon (Slc41a1-201/Slc41a1, exon 11 of 11)",1,131827977,131848865,20889,1,Slc41a1-201,18576,Slc41a1-201;Slc41a1-203,Slc41a1;Slc41a1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,98396,ENSMUSG00000013275,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6656,cg27205174,0.000175036,0.0000135,12.99035438,4.21E-31,gain,yes,-0.0000817,0.0000229,-3.568063355,0.000416526,neg,ns,0.043389819,0.006706298,6.470010329,3.82E-10,pos,ns,9.418041446,-0.002277233,0.000230629,-9.874009954,3.58E-20,neg,yes,0.518760803,Rreb1,Rreb1_Exon,13,37941557,37941606,37941605,37941606,50,-,CCTTGTCAAAAATGCGATGCCTTCTTTTCTACCAAATCTAACTGTGAACG,"Exon (Rreb1-207/Rreb1, exon 11 of 13)",13,37826315,37952005,125691,1,Rreb1-207,115242,Rreb1-207;Rreb1-206;Rreb1-205;Rreb1-201,Rreb1;Rreb1;Rreb1;Rreb1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,10,68750,ENSMUSG00000039087,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
27239,cg16209866,0.000121375,0.0000158,7.673653802,2.19E-13,gain,yes,0.0000959,0.0000269,3.56799758,0.000416627,pos,ns,0.043524547,0.00787236,5.52877999,6.85E-08,pos,ns,7.16416054,-0.000527748,0.00027073,-1.949353471,0.052154781,neg,ns,0.393867673,Rai2,Rai2_Intron,X,161723669,161723718,161723669,161723670,50,+,CGACATTCTGGCGAAAAATAATTCATTAACAGCCAGGGTATTACCAGTTC,"Intron (Rai2-202/Rai2, intron 1 of 1)",20,161717069,161779494,62426,1,Rai2-202,6600,Rai2-202;Rai2-201,Rai2;Rai2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,5,24004,ENSMUSG00000043518,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24005,cg17749809,-0.00000754,0.00000392,-1.92526591,0.055110763,loss,ns,-0.0000238,0.00000666,-3.567850806,0.000416851,neg,ns,-0.00561305,0.001950348,-2.877973356,0.004280389,neg,ns,2.36851677,0.0000532,0.0000671,0.79262006,0.428605379,pos,ns,0.889114318,Atxn2,Atxn2_Exon,5,121813529,121813578,121813577,121813578,50,+,TTCCCCTATATGACGCACCCTTCAGGTGAGGCGTGTGTGTGCAGGGGCCG,"Exon (Atxn2-201/Atxn2, exon 24 of 25)",5,121711609,121814950,103342,1,Atxn2-201,101920,Atxn2-201;Atxn2-209;Atxn2-214;Atxn2-215;Atxn2-217;Atxn2-210;Atxn2-203;Atxn2-206;Atxn2-212;Atxn2-211;Atxn2-205;Atxn2-218;Sh2b3-205;Sh2b3-202;Sh2b3-208;Sh2b3-204;Sh2b3-201;Sh2b3-203,Atxn2;Atxn2;Atxn2;Atxn2;Atxn2;Atxn2;Atxn2;Atxn2;Atxn2;Atxn2;Atxn2;Atxn2;Sh2b3;Sh2b3;Sh2b3;Sh2b3;Sh2b3;Sh2b3,0;0;0;11783;11418;0;0;0;2865;2564;0;0;23247;23281;15163;22526;23272;23239,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,16,20239,ENSMUSG00000042605,conserved gene but different region,5,121813431,121813604,174,*,174,15,0.632183908,0.881458967,0.086206897,8.65E-11,CpGisland,TRUE,U10,Tr-S
5249,cg04840997,-0.0000227,0.0000141,-1.608796018,0.10867883,loss,ns,0.0000856,0.000024,3.567134066,0.000417947,pos,ns,0.006741911,0.007032738,0.958646676,0.338483826,pos,ns,0.470462078,0.000299494,0.000241855,1.238319381,0.216534582,pos,ns,0.888338225,Tlx3,Tlx3_Intergenic_downstream,11,33192401,33192450,33192449,33192450,50,-,CTAAAACTGCAGCATTTTATCTCAAGTTTATTACCCATTTTTGAGAATCG,Distal Intergenic,11,33200752,33203589,2838,2,Tlx3-201,11188,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,20,27140,ENSMUSG00000040610,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
8031,cg08157379,-0.0000118,0.00000591,-1.99222788,0.047222868,loss,ns,0.0000358,0.00001,3.56709231,0.000418011,pos,ns,0.003973759,0.002939934,1.351649007,0.177473058,pos,ns,0.750867567,-0.0000966,0.000101104,-0.955871541,0.339881947,neg,ns,0.821683315,Pax5,Pax5_Exon,4,44697594,44697643,44697642,44697643,50,+,TGATGAGCAAGTTCCACTATCCTCTGGCGGACTACATCCGGGAGTGGCCG,"Exon (Pax5-201/Pax5, exon 2 of 10)",4,44524757,44710487,185731,2,Pax5-201,12844,Pax5-201;Pax5-202;Pax5-203;Pax5-204;Pax5-205;Pax5-207;Pax5-206;Pax5-209;Pax5-210;Pax5-212;Pax5-213;Pax5-214;Pax5-215;Pax5-208;Pax5-216;Pax5-217;Pax5-218;Pax5-219,Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,45,18507,ENSMUSG00000014030,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5815,cg20408638,0.0000963,0.0000242,3.984427262,0.0000844,gain,ns,-0.000146453,0.0000411,-3.566286141,0.000419247,neg,ns,0.079475349,0.012030976,6.605893813,1.72E-10,pos,yes,9.76466592,-0.003881701,0.000413744,-9.381883591,1.43E-18,neg,yes,0.747256628,Tnks,Tnks_Intron,8,34890672,34890721,34890672,34890673,50,-,CGTGACGTTAGCCAGCTTGTGAAGGCAGCATCACCAGTGCCTTGGAGACG,"Intron (Tnks-201/Tnks, intron 3 of 26)",8,34826460,34965690,139231,2,Tnks-201,74969,Tnks-201;Tnks-203,Tnks;Tnks,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,6,21951,ENSMUSG00000031529,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7628,cg17824848,0.0000675,0.0000123,5.478355603,8.89E-08,gain,yes,-0.0000746,0.0000209,-3.566281495,0.000419254,neg,ns,0.007607057,0.006131978,1.240555182,0.215708182,pos,ns,0.666133382,0.0000861,0.000210878,0.408229914,0.68338671,pos,ns,0.766431118,Zbtb20,Zbtb20_Intron,16,43503996,43504045,43504044,43504045,50,-,GTTCATTTCTAGCAGGTGGATTTAGACGGGAGTTACTTAACGCTTGACCG,"Intron (Zbtb20-211/Zbtb20, intron 4 of 4)",16,42907542,43569781,662240,1,Zbtb20-211,596454,Zbtb20-211;Zbtb20-217;Zbtb20-204;Zbtb20-215;Zbtb20-201;Zbtb20-203;Zbtb20-214;Zbtb20-213;Zbtb20-219;Zbtb20-216;Zbtb20-208;Zbtb20-207;Zbtb20-220;Zbtb20-206;Zbtb20-221;Zbtb20-202,Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,98,56490,ENSMUSG00000022708,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21035,cg16625559,0.00000946,0.0000141,0.672372393,0.501847486,gain,ns,0.0000853,0.0000239,3.565426225,0.000420569,pos,ns,-0.002691428,0.007005727,-0.384175403,0.701111831,neg,ns,0.154212704,0.000439805,0.000240926,1.825472979,0.068891709,pos,ns,0.870502303,Dcdc5,Dcdc5_Intron,2,106133378,106133427,106133378,106133379,50,+,CGATTGCTGGGGCCACAGTGTTGGTACTCTTATTTTGCTGTGCCACCTTT,"Intron (Dcdc5-203/Dcdc5, intron 8 of 8)",2,106003336,106157718,154383,1,Dcdc5-203,130042,Dcdc5-203;Dcdc5-202,Dcdc5;Dcdc5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,22,329482,ENSMUSG00000074981,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20089,cg13469182,0.0000089,0.0000115,0.774909031,0.438984078,gain,ns,-0.0000695,0.0000195,-3.56424361,0.000422394,neg,ns,0.002515653,0.005713719,0.440282967,0.660039007,pos,ns,0.180430398,-0.000450372,0.000196494,-2.292033042,0.022573705,neg,ns,0.853828426,Gm47014,Gm47014_Intergenic_upstream,13,102504629,102504678,102504677,102504678,50,-,TCTAAATCTCATCAGCACAAAAGCCAAAAAGGTTAATCCTGATTTAGCCG,Distal Intergenic,13,102604533,102606903,2371,1,Gm47014-201,-99904,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12741,cg12727607,0.00000735,0.00000711,1.032669322,0.302563628,gain,ns,-0.000043,0.0000121,-3.561534633,0.000426603,neg,ns,-0.006265043,0.00354119,-1.769191425,0.077845113,neg,ns,1.108768648,0.0000183,0.000121781,0.149898063,0.880942518,pos,ns,0.693004447,Tpm1,Tpm1_Exon,9,67029692,67029741,67029740,67029741,50,+,CCAGCTCCTCGCTGATGGCTTTGTACTTCAGTTTCTGAGCGTACAGCTCG,"Exon (Tpm1-205/Tpm1, exon 9 of 10)",9,67022590,67043907,21318,2,Tpm1-212,14166,Tpm1-212;Tpm1-215;Tpm1-216;Tpm1-211;Tpm1-209;Tpm1-202;Tpm1-218;Tpm1-214;Tpm1-213;Tpm1-220;Tpm1-210;Tpm1-208;Tpm1-205;Tpm1-203;Tpm1-206;Tpm1-207;Tpm1-204;Tpm1-201;Tpm1-221;Tpm1-217;Tpm1-219,Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,10,22003,ENSMUSG00000032366,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13517,cg26113820,0.0000489,0.0000135,3.636628031,0.000323368,gain,ns,-0.0000814,0.0000229,-3.561397919,0.000426816,neg,ns,0.048012766,0.006698816,7.167351561,5.62E-12,pos,yes,11.25018872,-0.001539217,0.000230372,-6.681449962,1.10E-10,neg,yes,0.711109401,Arid4a,Arid4a_Exon,12,71019375,71019424,71019375,71019376,50,+,CGGCAGATGAGCCTGCCTACCTGACAGTGGGAACCGATGTCAGTGCCAAG,"Exon (Arid4a-201/Arid4a, exon 3 of 24)",12,71015990,71098592,82603,1,Arid4a-201,3385,Arid4a-201;Arid4a-203;Arid4a-202,Arid4a;Arid4a;Arid4a,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,9,238247,ENSMUSG00000048118,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12967,cg24483202,-0.00000522,0.00000396,-1.317635071,0.188598783,loss,ns,0.000024,0.00000673,3.561146646,0.000427209,pos,ns,0.002940881,0.001972782,1.490727749,0.137049781,pos,ns,0.863121655,-0.00010675,0.0000678,-1.573463581,0.11663152,neg,ns,0.913039201,Erbb4,Erbb4_Intron,1,68861050,68861099,68861050,68861051,50,-,CGGTCCCCACAGACCTGATGGTGCTCTCTGCTGCAAAAGCAATTTTCATT,"Intron (Erbb4-201/Erbb4, intron 1 of 27)",1,68032186,69107756,1075571,2,Erbb4-201,246657,Erbb4-201;Erbb4-202;Erbb4-205,Erbb4;Erbb4;Erbb4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,13,13869,ENSMUSG00000062209,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25018,cg02053521,-0.00000291,0.00000984,-0.296037019,0.767400023,loss,ns,0.0000595,0.0000167,3.560778392,0.000427784,pos,ns,0.003147243,0.004895841,0.642840183,0.520802981,pos,ns,0.283326539,-0.00015037,0.000168368,-0.893106843,0.372492741,neg,ns,0.163163978,Fgfr2,Fgfr2_Intron,7,131550575,131550624,131550623,131550624,50,+,ATGTCATTTGCACCAAAGAACGAACAGCAGAGGCCCTTGAACGAAAATCG,"Intron (Hmx2-202/Hmx2, intron 1 of 2)",7,130162451,133123350,2960900,2,Fgfr2-217,1572726,Fgfr2-217;Hmx2-202;Hmx2-201,Fgfr2;Hmx2;Hmx2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,58,79,14183,ENSMUSG00000030849,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
20828,cg03972931,0.0000545,0.00000639,8.524603925,6.83E-16,gain,yes,-0.0000386,0.0000109,-3.560082364,0.000428875,neg,ns,-0.001701445,0.003179845,-0.535071596,0.59298395,neg,ns,0.226957061,-0.000217769,0.000109355,-1.991400823,0.04731414,neg,ns,0.661861012,Apbb1,Apbb1_fiveUTR,7,105569318,105569367,105569318,105569319,50,-,CGTGCTTCCCGTTACCAGGGAAACCAGGAATCCTGACTGGTCCAAGAGGC,5' UTR,7,105558483,105581653,23171,2,Apbb1-217,12286,Apbb1-217;Apbb1-209;Apbb1-215;Apbb1-212;Apbb1-219;Apbb1-201;Apbb1-208;Apbb1-214;Apbb1-213;Apbb1-205;Apbb1-221;Apbb1-218;Apbb1-202;Apbb1-210;Apbb1-207;Apbb1-206;Apbb1-220;Apbb1-204;Apbb1-203;Apbb1-216;Apbb1-211,Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1,0;0;0;0;0;0;0;0;0;0;0;-3813;0;0;-355;-53;-47;-45;0;-648;11821,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,6,8,11785,ENSMUSG00000037032,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20032,cg17081575,0.0000398,0.0000161,2.479625194,0.013683191,gain,ns,0.0000971,0.0000273,3.558859569,0.000430797,pos,ns,0.008767263,0.007995959,1.096461691,0.273727809,pos,ns,0.562681079,-0.000102911,0.00027498,-0.37424969,0.708474415,neg,ns,0.480312774,Cited1,Cited1_Promoter,X,102254062,102254111,102254062,102254063,50,-,CGCCCTCCATCTATTGGATGGCTCCCAGGCCAATTGTTAGAAAGAGGCAT,Promoter (1-2kb),20,102247381,102252181,4801,2,Cited1-201,-1930,Cited1-201;Cited1-202;Cited1-204;Cited1-203;Cited1-205,Cited1;Cited1;Cited1;Cited1;Cited1,0;-2210;-3116;-3287;-2144,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,2,3,12705,ENSMUSG00000051159,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22087,cg10665864,0.0000186,0.0000112,1.663108554,0.097301328,gain,ns,0.0000677,0.000019,3.555923902,0.000435444,pos,ns,0.009922239,0.005580435,1.778040507,0.076377342,pos,ns,1.117035459,-0.000220769,0.000191911,-1.150372302,0.250877177,neg,ns,0.596630889,Pou3f4,Pou3f4_Intron,X,110802724,110802773,110802724,110802725,50,-,CGGCTGGCTCAGAGAGCCAGCCTGGGTGCAAAGCAGGGCCTATGGTTTAG,"Intron (Gm44593-201/Gm44593-201, intron 1 of 2)",20,110814280,110817207,2928,1,Pou3f4-201,-11556,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,7,18994,ENSMUSG00000056854,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5462,cg23356959,0.0000169,0.0000117,1.443471821,0.149897368,gain,ns,0.0000708,0.0000199,3.555606225,0.00043595,pos,ns,0.023558517,0.00583112,4.040135486,0.0000674,pos,ns,4.171220979,-0.000493516,0.000200532,-2.461038603,0.014398202,neg,ns,0.848206647,Mvb12b,Mvb12b_Intergenic_upstream,2,34016621,34016670,34016669,34016670,50,+,GAAAAAAATTAATTCTCATTTGCATTACCTCGTCTAAATGTCACCCACCG,Distal Intergenic,2,33729953,33887946,157994,2,Mvb12b-201,-128675,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,16,47,72543,ENSMUSG00000038740,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18327,cg12076803,0.000145818,0.0000175,8.329803497,2.64E-15,gain,yes,-0.000105715,0.0000297,-3.554685309,0.000437419,neg,ns,0.002032901,0.008712693,0.233326303,0.815662028,pos,ns,0.088489755,-0.00078043,0.000299629,-2.604657731,0.009639798,neg,ns,0.513510875,Plxnc1,Plxnc1_threeUTR,10,94792943,94792992,94792991,94792992,50,-,AGGCTGTTTGCAACAACCACTTCAACTCTATTTACAGAAGGGTTCCCACG,3' UTR,10,94790866,94944835,153970,2,Plxnc1-201,151843,Cep83-201;Cep83-202;Plxnc1-201,Cep83;Cep83;Plxnc1,104289;52859;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,5,54712,ENSMUSG00000074785,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27455,cg08609368,0.0000536,0.00000415,12.91055032,8.26E-31,gain,yes,-0.0000251,0.00000705,-3.554440698,0.00043781,neg,ns,-0.001417195,0.002066013,-0.685956807,0.493253034,neg,ns,0.306930235,0.000173453,0.0000711,2.44128099,0.015194382,pos,ns,0.92028548,Pbx1,Pbx1_Intron,1,168269157,168269206,168269205,168269206,50,-,GAAAGTAATTAACAGTAATTAATCCTTAATTACAGTAATTAGCCAAGTCG,"Intron (Pbx1-208/Pbx1, intron 2 of 7)",1,168119364,168432270,312907,2,Pbx1-208,163064,Pbx1-208;Pbx1-205;Pbx1-206;Pbx1-201;Pbx1-202;Pbx1-204,Pbx1;Pbx1;Pbx1;Pbx1;Pbx1;Pbx1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,84,18514,ENSMUSG00000052534,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24686,cg14817080,0.0000385,0.00000343,11.21943122,9.60E-25,gain,yes,-0.0000207,0.00000583,-3.553435843,0.00043942,neg,ns,-0.000843328,0.001709222,-0.493399072,0.622079991,neg,ns,0.206153768,0.0000361,0.0000588,0.61464905,0.539237382,pos,ns,0.098488836,Neurog2,Neurog2_Promoter,3,127625954,127626003,127625954,127625955,50,+,CGGAGCCGGAATAAAGCCTTCAGATTTGGGATCATTGCCTCCAGACAACA,Promoter (7-8kb),3,127633135,127635631,2497,1,Neurog2-201,-7132,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,13,14,11924,ENSMUSG00000027967,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
19816,cg03102453,0.00000347,0.00000364,0.954101476,0.340775651,gain,ns,-0.000022,0.00000619,-3.552438829,0.000441023,neg,ns,-0.000772186,0.001812148,-0.42611646,0.670318703,neg,ns,0.173718663,-0.0000126,0.0000623,-0.201822499,0.840187866,neg,ns,0.924043037,Nr4a1,Nr4a1_Exon,15,101271754,101271803,101271802,101271803,50,+,GCCAAGTACATCTGCCTGGCTAACAAGGACTGCCCTGTGGACAAGAGGCG,"Exon (Nr4a1-202/Nr4a1, exon 4 of 8)",15,101254269,101274795,20527,1,Nr4a1-202,17485,Nr4a1-202;Nr4a1-203;Nr4a1-201;Nr4a1-204,Nr4a1;Nr4a1;Nr4a1;Nr4a1,0;4908;0;-1058,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,15370,ENSMUSG00000023034,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5671,cg10439738,-0.00000807,0.00000743,-1.086183385,0.278241746,loss,ns,-0.0000448,0.0000126,-3.552231641,0.000441356,neg,ns,0.012341391,0.003698034,3.337284407,0.000949017,pos,ns,3.022725782,-0.000480743,0.000127175,-3.780170061,0.000187968,neg,ns,0.836231785,Mapkap1,Mapkap1_Intron,2,34535014,34535063,34535014,34535015,50,-,CGGATGAGCTGTCTCAAGGCCATATTCCAGGGGAACGATAAGAGCTGTAA,"Intron (Mapkap1-204/Mapkap1, intron 6 of 10)",2,34406862,34623475,216614,1,Mapkap1-204,128152,Mapkap1-204;Mapkap1-202;Mapkap1-201;Mapkap1-209;Mapkap1-203;Mapkap1-207,Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,59,227743,ENSMUSG00000038696,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21269,cg03909657,-0.00000189,0.00000301,-0.62732547,0.530907683,loss,ns,-0.0000182,0.00000512,-3.551980315,0.000441761,neg,ns,0.000917999,0.001500362,0.611852128,0.541084066,pos,ns,0.266735255,-0.000104293,0.0000516,-2.021289074,0.044108943,neg,ns,0.927938087,Bptf,Bptf_threeUTR,11,107035638,107035687,107035638,107035639,50,+,CGTTGGACAAAATTGGCCAAGAATATAATTGGACTGTTATGACCAATAAA,3' UTR,11,107033081,107131922,98842,2,Bptf-201,96235,Bptf-201;Bptf-202;Bptf-203;Bptf-208;Bptf-206,Bptf;Bptf;Bptf;Bptf;Bptf,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,4,207165,ENSMUSG00000040481,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26366,cg01609034,-0.00000108,0.00000124,-0.870365233,0.3847743,loss,ns,0.00000748,0.00000211,3.550623083,0.000443955,pos,ns,0.000606354,0.000616985,0.982768527,0.326487751,pos,ns,0.486133108,-0.0000191,0.0000212,-0.899585341,0.369039207,neg,ns,0.979621617,Htr2c,Htr2c_Exon,X,147169662,147169711,147169710,147169711,50,+,ATATCGCTGGATCGGTATGTAGCAATACGTAATCCTATTGAGCATAGCCG,"Exon (Htr2c-201/Htr2c, exon 5 of 6)",20,146962513,147197274,234762,1,Htr2c-201,207149,Htr2c-201;Htr2c-202;Htr2c-207;Htr2c-203,Htr2c;Htr2c;Htr2c;Htr2c,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,8,15560,ENSMUSG00000041380,conserved gene and region,X,147169604,147169752,149,*,149,10,0.483221477,1.157731158,0.067114094,0.00000263,CpGisland,TRUE,U15,NS
19591,cg04182635,0.0000493,0.0000148,3.324223825,0.000992975,gain,ns,0.0000893,0.0000252,3.54976349,0.00044535,pos,ns,0.014613106,0.007373938,1.981723467,0.048393229,pos,ns,1.315215401,0.00012071,0.000253589,0.476005353,0.634405848,pos,ns,0.413387356,Eda,Eda_Intron,X,99976831,99976880,99976879,99976880,50,-,AACAGCAATTTTAAAAATCTATGGAAATAAAACTCACCCTTTGCATGCCG,"Intron (Eda-211/Eda, intron 1 of 1)",20,99975606,100311299,335694,1,Eda-211,1225,Eda-211;Eda-208;Eda-209;Eda-202;Eda-203;Eda-206;Eda-205;Eda-207;Eda-204;Eda-201,Eda;Eda;Eda;Eda;Eda;Eda;Eda;Eda;Eda;Eda,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,9,13607,ENSMUSG00000059327,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
5610,cg17437489,-0.00000511,0.00000526,-0.97125982,0.33217612,loss,ns,-0.0000317,0.00000893,-3.54972258,0.000445417,neg,ns,-0.007741691,0.002617494,-2.957672645,0.00333808,neg,ns,2.476503318,0.000155047,0.00009,1.722448722,0.085985621,pos,ns,0.863840232,Pbx3,Pbx3_Intron,2,34355899,34355948,34355947,34355948,50,+,GCTTTCTTCAAGCAAGTGCGTATTAATTTCTGTCATCCCAAACATCATCG,"Intron (Pbx3-202/Pbx3, intron 2 of 7)",2,34171457,34372038,200582,2,Pbx3-202,16090,Pbx3-202;Pbx3-201;Pbx3-206;Pbx3-207;Pbx3-209;Pbx3-204;Pbx3-205;Pbx3-203,Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,82,18516,ENSMUSG00000038718,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13815,cg27056301,-0.00000406,0.0000148,-0.274016482,0.784254449,loss,ns,0.0000893,0.0000252,3.549675653,0.000445493,pos,ns,0.008402742,0.007369264,1.140241627,0.255065833,pos,ns,0.593347713,0.0000267,0.000253428,0.105406462,0.916121459,pos,ns,0.730613632,Rpl31-ps2,Rpl31-ps2_Intergenic_upstream,13,73009303,73009352,73009351,73009352,50,+,CCTTTCATAACACCCATAAATATTTCATAACAAATAAATAAAGAATGTCG,Distal Intergenic,13,73233395,73233737,343,1,Rpl31-ps2-201,-224043,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,8,621486,NA,mapped to different genes,13,73009351,73009425,75,*,75,9,0.72,0.931034483,0.12,7.18E-08,CpGisland,TRUE,U15,NS
14994,cg12844801,-0.00000458,0.0000129,-0.354954666,0.722864918,loss,ns,0.0000777,0.0000219,3.549375907,0.00044598,pos,ns,-0.011528035,0.006415023,-1.797037261,0.073302955,neg,ns,1.134878521,0.000724921,0.000220612,3.285954712,0.001132924,pos,ns,0.794078035,Pou4f2,Pou4f2_Intergenic_downstream,8,78421911,78421960,78421959,78421960,50,+,TGGTGTACTTGCTCTTCCAAACTCATCTAAATTACATCAATAACAGAGCG,Distal Intergenic,8,78433010,78436645,3636,2,Pou4f2-201,14685,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,23,18997,ENSMUSG00000031688,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
23052,cg04016348,0.0000408,0.00000626,6.523077115,2.80E-10,gain,yes,-0.0000377,0.0000106,-3.549311716,0.000446085,neg,ns,-0.006411174,0.0031148,-2.058293737,0.040397501,neg,ns,1.393645501,0.0000929,0.000107118,0.867511564,0.386332799,pos,ns,0.844208057,Taok3,Taok3_fiveUTR,5,117240482,117240531,117240530,117240531,50,-,AGAACTGTGTACGATCATGACTGGAAAGCAGGATCCCTCAGTGACTGCCG,5' UTR,5,117120129,117275217,155089,1,Taok3-203,120353,Taok3-203;Taok3-210;Taok3-201;Taok3-205;Taok3-208;Taok3-202,Taok3;Taok3;Taok3;Taok3;Taok3;Taok3,0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,11,20,330177,ENSMUSG00000061288,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19599,cg13600411,0.00000426,0.0000127,0.335652288,0.737360135,gain,ns,0.0000765,0.0000216,3.547761038,0.000448615,pos,ns,0.013503732,0.006316919,2.137708385,0.033322356,pos,ns,1.477264307,-0.00000577,0.000217238,-0.026552842,0.978833471,neg,ns,0.85682048,Gm8641,Gm8641_Intron,9,100025979,100026028,100026027,100026028,50,-,ACTCTGATAGCATTACGGCCAAACATGGAACCATTTTCTGTGGCGAATCG,"Intron (4930519F24Rik-201/4930519F24Rik-201, intron 2 of 2)",9,99946564,99947389,826,2,Gm8641-201,-78639,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,15,667456,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27071,cg12849734,0.0000411,0.0000169,2.432304333,0.015568815,gain,ns,-0.000101823,0.0000287,-3.546747011,0.000450277,neg,ns,-0.014779551,0.008410743,-1.757223107,0.079866899,neg,ns,1.09763318,0.000535636,0.000289245,1.851844739,0.064998794,pos,ns,0.38372302,Ctnnbl1,Ctnnbl1_Intergenic_upstream,2,157705660,157705709,157705660,157705661,50,+,CGGGTTACTCAGTACAATTATTTATTCGGAATTAGATCTGGAGGCATCTG,Distal Intergenic,2,157737401,157891614,154214,1,Ctnnbl1-201,-31692,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,8,66642,ENSMUSG00000027649,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
307,cg25499940,0.0000145,0.00000238,6.087846785,3.38E-09,gain,yes,-0.0000143,0.00000404,-3.546728221,0.000450308,neg,ns,0.000103776,0.001184233,0.087631285,0.930226315,pos,ns,0.031411379,-0.0000678,0.0000407,-1.664624118,0.096998121,neg,ns,0.935985931,Ewsr1,Ewsr1_Exon,11,5080623,5080672,5080623,5080624,50,-,CGGCTGAGTACTGAGTACGGGTACTTTTTAAGTATTGAAGTGTATACAAG,"Exon (Ewsr1-204/Ewsr1, exon 9 of 9)",11,5069689,5099266,29578,2,Ewsr1-203,18594,Ewsr1-203;Ewsr1-202;Ewsr1-205;Ewsr1-209;Ewsr1-212;Ewsr1-208;Ewsr1-211;Ewsr1-204;Ewsr1-210,Ewsr1;Ewsr1;Ewsr1;Ewsr1;Ewsr1;Ewsr1;Ewsr1;Ewsr1;Ewsr1,0;0;0;0;-2102;0;0;0;5364,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,8,14030,ENSMUSG00000009079,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13106,cg25325269,0.00000583,0.00000395,1.47628221,0.140883193,gain,ns,0.0000238,0.00000671,3.544704166,0.000453643,pos,ns,0.003199468,0.001964843,1.628358464,0.104464714,pos,ns,0.981030381,0.0000149,0.0000676,0.220528193,0.825604983,pos,ns,0.915008655,Gm7627,Gm7627_Intergenic_downstream,7,69491209,69491258,69491209,69491210,50,-,CGGCAAGGGAATTCACACTGAAGCCAGGGTTGCCTGATTTAAAGATGTAG,Distal Intergenic,7,69605842,69606840,999,2,Gm7627-201,115631,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,11,665410,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4927,cg21736365,-0.0000114,0.00000435,-2.618807632,0.00925741,loss,ns,-0.0000262,0.00000739,-3.54412563,0.000454601,neg,ns,-0.002324445,0.002164711,-1.073790426,0.283751735,neg,ns,0.547061475,-0.000106355,0.0000744,-1.428659065,0.154109034,neg,ns,0.895260626,Nfrkb,Nfrkb_threeUTR,9,31403524,31403573,31403572,31403573,50,+,GGGCCAGTGAAGGGCGTGTTTGACAAGGAGACCTCGCTCAACAAGGCTCG,3' UTR,9,31386192,31421333,35142,1,Nfrkb-201,17332,Nfrkb-201;Nfrkb-204;Nfrkb-208;Nfrkb-209;Nfrkb-205;Nfrkb-210;Nfrkb-207;Nfrkb-202,Nfrkb;Nfrkb;Nfrkb;Nfrkb;Nfrkb;Nfrkb;Nfrkb;Nfrkb,0;0;0;0;0;0;6292;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,4,235134,ENSMUSG00000042185,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27527,cg02499472,0.00000771,0.00000739,1.043819573,0.297382161,gain,ns,0.0000444,0.0000125,3.541764568,0.000458528,pos,ns,-0.003788645,0.003675956,-1.030655736,0.303505725,neg,ns,0.517833112,0.000281109,0.000126416,2.223682592,0.02689021,pos,ns,0.864455329,Zfp64,Zfp64_Intergenic_upstream,2,169158832,169158881,169158832,169158833,50,+,CGTAATTTTCTTCAGAGATGCTCTTCACGTCTGGAGAGTTATGAGGCAAT,Distal Intergenic,2,168893331,168955587,62257,2,Zfp64-203,-203245,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,11,22722,ENSMUSG00000027551,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21156,cg13993270,-0.0000387,0.0000114,-3.410294915,0.00073487,loss,ns,0.0000683,0.0000193,3.540530898,0.000460592,pos,ns,0.008287833,0.005652337,1.466266552,0.14358931,pos,ns,0.842877893,-0.000000711,0.000194383,-0.003659461,0.997082533,neg,ns,0.391881682,Gm17304,Gm17304_Exon,5,106574976,106575025,106575024,106575025,50,-,TATCCTTTTGATGGCTATAATTTATTCCAAATCGTCCCTGGACTGAAACG,"Exon (Gm29464-201/Gm29464-201, exon 1 of 1)",5,106609098,106609201,104,1,Gm17304-201,-34122,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,35,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16845,cg21012014,0.0000265,0.000015,1.765769786,0.078418803,gain,ns,-0.0000901,0.0000255,-3.539318372,0.00046263,neg,ns,0.002436865,0.007458859,0.326707513,0.744109589,pos,ns,0.128363099,-0.000895703,0.00025651,-3.491887958,0.000549303,neg,ns,0.817309587,Il1rapl1,Il1rapl1_Exon,X,86747569,86747618,86747569,86747570,50,+,CGAGACAGTCTGCAGCTCCCCAAAAGGCCCTTGCTCACTGACATCTAAAG,"Exon (Il1rapl1-203/Il1rapl1, exon 11 of 11)",20,86740870,88115645,1374776,2,Il1rapl1-203,1368027,Il1rapl1-203;Il1rapl1-201,Il1rapl1;Il1rapl1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,18,331461,ENSMUSG00000052372,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24037,cg21380226,0.0000231,0.0000119,1.934714481,0.053934935,gain,ns,-0.0000718,0.0000203,-3.538862145,0.000463399,neg,ns,0.051053327,0.005944195,8.588770278,4.35E-16,pos,yes,15.36106937,-0.001888633,0.00020442,-9.238967158,4.09E-18,neg,yes,0.845701504,Ubfd1,Ubfd1_threeUTR,7,122078469,122078518,122078469,122078470,50,+,CGGAAGCCTCTTACTACTGGGTGTACTGGGTTCCAACTCAATATGTGGAT,3' UTR,7,122067175,122082194,15020,1,Ubfd1-201,11294,Ubfd1-201;Ubfd1-204;Ubfd1-205,Ubfd1;Ubfd1;Ubfd1,0;11261;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,2,28018,ENSMUSG00000030870,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12622,cg14639087,0.0000773,0.0000125,6.191547918,1.89E-09,gain,yes,-0.000075,0.0000212,-3.538181149,0.000464549,neg,ns,0.04305916,0.006209903,6.93395049,2.39E-11,pos,yes,10.62242263,-0.001620947,0.000213558,-7.590193903,3.78E-13,neg,yes,0.212904216,Ccnl1,Ccnl1_threeUTR,3,65950064,65950113,65950112,65950113,50,-,AGAACTAGAAGATGCTGCCAGATGGATATGGACCACTTCAGTGAATCTCG,3' UTR,3,65946151,65958162,12012,2,Ccnl1-203,8049,Ccnl1-203;Ccnl1-214;Ccnl1-202;Ccnl1-201;Ccnl1-205;Ccnl1-206;Ccnl1-212;Ccnl1-207;Ccnl1-213;Ccnl1-211;Ccnl1-208;Ccnl1-204;Ccnl1-209;Ccnl1-210,Ccnl1;Ccnl1;Ccnl1;Ccnl1;Ccnl1;Ccnl1;Ccnl1;Ccnl1;Ccnl1;Ccnl1;Ccnl1;Ccnl1;Ccnl1;Ccnl1,0;0;0;0;0;0;0;0;0;0;0;1755;2880;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,7,7,56706,ENSMUSG00000027829,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20855,cg26912563,0.0000225,0.0000114,1.962436839,0.050605835,gain,ns,0.0000688,0.0000194,3.537626095,0.000465488,pos,ns,0.016594716,0.005694207,2.91431547,0.00382412,pos,ns,2.41746848,-0.000237218,0.000195823,-1.211388982,0.226668974,neg,ns,0.175377254,Pax6,Pax6_Promoter,2,105665099,105665148,105665147,105665148,50,+,GAGATCTTTCCGCTCATTGCCCATTCAAATACAATTGTAGATCGAAGCCG,Promoter (3-4kb),2,105668900,105697364,28465,1,Pax6-206,-3752,Pax6-206;Pax6-207;Pax6-210;Pax6-214,Pax6;Pax6;Pax6;Pax6,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,10,78,18508,ENSMUSG00000027168,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
22065,cg19513715,0.00000109,0.00000403,0.270122939,0.787245411,gain,ns,-0.0000242,0.00000685,-3.536486034,0.000467423,neg,ns,-0.003867924,0.002006225,-1.927960587,0.054773255,neg,ns,1.26143145,0.00000795,0.000069,0.115218055,0.908346882,pos,ns,0.920807811,Dync1h1,Dync1h1_Exon,12,110639848,110639897,110639848,110639849,50,-,CGCTGCCTGGGCTCGCTCTTCTCCATGCTGCACCAGGCCTGCCGCAACGT,"Exon (Dync1h1-201/Dync1h1, exon 36 of 77)",12,110601452,110666945,65494,1,Dync1h1-201,38396,Dync1h1-201;Dync1h1-208,Dync1h1;Dync1h1,0;-627,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,13424,ENSMUSG00000018707,conserved gene and region,12,110639713,110639901,189,*,189,14,0.592592593,0.857142857,0.074074074,3.29E-09,CpGisland,TRUE,U10,Tr-S
7216,cg16514417,0.0000737,0.00000934,7.893214757,5.12E-14,gain,yes,-0.0000561,0.0000159,-3.534129176,0.000471447,neg,ns,0.006852245,0.004646657,1.474661231,0.141318471,pos,ns,0.849801071,-0.000127875,0.000159798,-0.800228956,0.424190964,neg,ns,0.580778733,Cntfr,Cntfr_Exon,4,41658847,41658896,41658847,41658848,50,+,CGCTCCAGTCACTCCATGTCCCAATCTCATTGTCCTTGGCTGCCACCTGG,"Exon (Cntfr-203/Cntfr, exon 8 of 10)",4,41657498,41695442,37945,2,Cntfr-203,36546,Cntfr-203;Cntfr-204;Cntfr-206,Cntfr;Cntfr;Cntfr,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,12,12804,ENSMUSG00000028444,conserved gene and region,4,41658691,41658848,158,*,158,14,0.772151899,0.726436782,0.088607595,2.93E-10,CpGisland,TRUE,U11,Tr-P
26546,cg02766229,0.000102661,0.00000759,13.52551933,4.44E-33,gain,yes,-0.0000456,0.0000129,-3.532748675,0.000473819,neg,ns,-0.005579181,0.003777718,-1.476865117,0.14072692,neg,ns,0.851622818,0.000219461,0.000129915,1.689258125,0.092175421,pos,ns,0.822044288,Casz1,Casz1_Intron,4,148908433,148908482,148908481,148908482,50,+,CAGGGTGACCTGTTTAATCATCTCATTTTCTGGTGGCCGTTTATTCCTCG,"Intron (Casz1-201/Casz1, intron 4 of 15)",4,148804429,148945129,140701,1,Casz1-201,104004,Casz1-201;Casz1-202;Casz1-206,Casz1;Casz1;Casz1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,94,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23421,cg09619923,-0.00011819,0.0000146,-8.078320605,1.48E-14,loss,yes,0.0000878,0.0000249,3.53114001,0.000476597,pos,ns,0.033733713,0.007281761,4.632631158,0.00000532,pos,ns,5.273918525,-0.002381403,0.000250419,-9.50966934,5.54E-19,neg,yes,0.339286932,Dpyd,Dpyd_Intergenic_upstream,3,118325303,118325352,118325351,118325352,50,-,GAAAGAGTTCAAATATGACAAACATTCTTAGCTGTCCCTTCTGGGACACG,Distal Intergenic,3,118562129,119432924,870796,1,Dpyd-201,-236826,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,29,99586,ENSMUSG00000033308,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14434,cg17228011,0.0000276,0.000024,1.149372229,0.25128851,gain,ns,-0.000143817,0.0000407,-3.52949394,0.000479455,neg,ns,0.066865832,0.011937543,5.601305892,0.000000047,pos,ns,7.328354613,-0.002898453,0.000410531,-7.060252238,1.10E-11,neg,yes,0.497999045,Ppp2r5e,Ppp2r5e_Exon,12,75593270,75593319,75593270,75593271,50,+,CGAGAAAATCCGTCTACTTTATCCACTGATGGAGGAGTAGTTGGTGCTGA,"Exon (Ppp2r5e-201/Ppp2r5e, exon 2 of 14)",12,75450881,75596200,145320,2,Ppp2r5e-201,2881,Ppp2r5e-201;Ppp2r5e-205;Ppp2r5e-202;Ppp2r5e-204,Ppp2r5e;Ppp2r5e;Ppp2r5e;Ppp2r5e,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,7,26932,ENSMUSG00000021051,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1073,cg02770072,-0.00000206,0.00000602,-0.341856858,0.732690248,loss,ns,0.0000361,0.0000102,3.529023225,0.000480276,pos,ns,0.009578886,0.002995936,3.197293145,0.001530458,pos,ns,2.815178564,-0.000187321,0.00010303,-1.818116702,0.070011328,neg,ns,0.655507798,Gm14515,Gm14515_Intergenic_upstream,X,11494097,11494146,11494145,11494146,50,+,GCCAGCCGGCAGCGAGGCCAGTCTGGTGTGAGTGGCAGCAAAGATAAACG,Distal Intergenic,20,11601354,11601569,216,1,Gm14515-201,-107208,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,21,28,,NA,mapped to different genes,X,11494085,11494196,112,*,112,10,0.669642857,0.797720798,0.089285714,0.000000188,CpGisland,TRUE,NA,NRS
3936,cg15649265,0.000000373,0.0000158,0.023652173,0.981145273,gain,ns,0.0000944,0.0000268,3.528850846,0.000480576,pos,ns,-0.001153299,0.007839689,-0.147110272,0.883140609,neg,ns,0.053970145,0.000280514,0.000269606,1.040457475,0.298938197,pos,ns,0.589111564,Fbxl16,Fbxl16_threeUTR,17,25821146,25821195,25821146,25821147,50,-,CGACCTCATTCTCCTGTATATGCGGAAGATATAACCTTATATTTGGTAAG,3' UTR,17,25809085,25821255,12171,1,Fbxl16-201,12061,Fbxl16-201;Fbxl16-203;Fbxl16-202;Wdr24-201;Wdr24-203;Wdr24-204;Wdr24-202,Fbxl16;Fbxl16;Fbxl16;Wdr24;Wdr24;Wdr24;Wdr24,0;0;0;-2432;-2454;-3335;-3467,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,2,214931,ENSMUSG00000025738,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
16574,cg27603363,-0.0000411,0.0000244,-1.683976902,0.093192711,loss,ns,0.000146313,0.0000415,3.527720305,0.000482553,pos,ns,-0.001622037,0.01215086,-0.1334915,0.893891302,neg,ns,0.048715289,0.000365697,0.000417867,0.875151616,0.382168959,pos,ns,0.47957176,Gm14765,Gm14765_Intergenic_downstream,X,85502374,85502423,85502422,85502423,50,+,TTTTTTAATTACAAAAAGCTACATTTTTCCAATAAATGAAATGTCAAACG,Distal Intergenic,20,85431827,85432152,326,1,Gm14765-201,70547,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18485,cg00158333,0.000078,0.00000429,18.15117916,1.14E-50,gain,yes,-0.0000257,0.0000073,-3.526702691,0.000484339,neg,ns,0.000944349,0.002137647,0.441770018,0.65896364,pos,ns,0.181138548,0.0000107,0.0000735,0.145816599,0.884160941,pos,ns,0.07733673,Igf2bp1,Igf2bp1_Intron,11,96004885,96004934,96004885,96004886,50,+,CGCCCCACTTTCAAATCAAAATGGCTCAAGCCCCAGGCCCTGGGCGGGAG,"Intron (Igf2bp1-201/Igf2bp1, intron 1 of 14)",11,95957163,96005940,48778,2,Igf2bp1-201,1006,Igf2bp1-201,Igf2bp1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,140486,ENSMUSG00000013415,conserved gene and region,11,96004571,96004886,316,*,316,41,0.699367089,1.068976898,0.129746835,1.42E-36,CpGisland,TRUE,U3,Pr-B
23241,cg21553452,0.0000211,0.00000479,4.39611128,0.0000152,gain,ns,-0.0000287,0.00000814,-3.526585275,0.000484546,neg,ns,-0.004407328,0.002383349,-1.849216524,0.065378397,neg,ns,1.184565733,0.000306746,0.000082,3.742490821,0.000217091,pos,ns,0.88392252,Eri3,Eri3_Intron,4,117581857,117581906,117581905,117581906,50,-,GCCTGTTTGCACACCAGGACCTTGGTGCTGTGCATCTCTATTAAATAGCG,"Intron (Eri3-201/Eri3, intron 3 of 8)",4,117550365,117674297,123933,1,Eri3-201,31492,Eri3-201;Eri3-205;Eri3-206;Eri3-202,Eri3;Eri3;Eri3;Eri3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,82,97,140546,ENSMUSG00000033423,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27613,cg00484915,0.0000018,0.0000055,0.327070678,0.743835167,gain,ns,-0.0000329,0.00000934,-3.526079832,0.000485435,neg,ns,0.009523815,0.002737164,3.479446486,0.000574435,pos,ns,3.24075904,-0.000614398,0.0000941,-6.527068367,2.74E-10,neg,yes,0.772249404,Dcaf8,Dcaf8_threeUTR,1,172188985,172189034,172188985,172188986,50,+,CGGTAGTGACTGTGGGCACATCTTCCTCTGGGAGAAATCATCCTGCCAGA,3' UTR,1,172148084,172194794,46711,1,Dcaf8-207,40901,Dcaf8-207;Dcaf8-211;Dcaf8-202;Dcaf8-209;Dcaf8-206;Dcaf8-201;Dcaf8-204;Dcaf8-210;Dcaf8-203,Dcaf8;Dcaf8;Dcaf8;Dcaf8;Dcaf8;Dcaf8;Dcaf8;Dcaf8;Dcaf8,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,2,98193,ENSMUSG00000026554,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19364,cg27589326,0.0000177,0.00000506,3.493819446,0.000545495,gain,ns,-0.0000303,0.00000859,-3.525346466,0.000486729,neg,ns,-0.003331608,0.002517339,-1.323464004,0.186656333,neg,ns,0.72895727,0.000277102,0.0000866,3.200857772,0.001512255,pos,ns,0.912257689,Foxp1,Foxp1_Intron,6,99102427,99102476,99102427,99102428,50,+,CGTCAACAGAGAGTACAAGGAAAACTGTCAACTAAATATTGTTTCCTTCA,"Intron (Foxp1-206/Foxp1, intron 3 of 17)",6,98925338,99266515,341178,2,Foxp1-206,164039,Foxp1-206;Foxp1-204;Foxp1-220;Foxp1-201;Foxp1-205;Foxp1-207;Foxp1-208;Foxp1-226;Foxp1-228;Foxp1-221;Foxp1-222;Foxp1-223,Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,87,108655,ENSMUSG00000030067,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4832,cg17903645,0.000148445,0.00000863,17.2078679,4.74E-47,gain,yes,-0.0000517,0.0000147,-3.525325331,0.000486766,neg,ns,-0.014170207,0.004293547,-3.300349728,0.001078261,neg,ns,2.967276241,0.000515589,0.000147655,3.491858994,0.000549361,pos,ns,0.714658718,Agbl5,Agbl5_fiveUTR,5,30890154,30890203,30890202,30890203,50,-,CCCAGCCCCACCATGGAGCTGCGCTGTGGGGGATTGCTGTTCAGTTCTCG,5' UTR,5,30888694,30891207,2514,1,Agbl5-203,1460,Agbl5-203;Agbl5-201;Agbl5-207;Agbl5-213;Agbl5-205;Agbl5-218;Agbl5-214;Agbl5-208;Agbl5-215;Agbl5-211;Agbl5-209;Agbl5-202;Agbl5-204;Agbl5-210;Agbl5-217;Agbl5-216;Agbl5-212,Agbl5;Agbl5;Agbl5;Agbl5;Agbl5;Agbl5;Agbl5;Agbl5;Agbl5;Agbl5;Agbl5;Agbl5;Agbl5;Agbl5;Agbl5;Agbl5;Agbl5,0;0;0;0;0;0;0;0;0;0;0;0;0;-79;0;-4794;-4936,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,5,231093,ENSMUSG00000029165,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
1106,cg03684591,0.000032,0.00000696,4.605412464,0.00000602,gain,ns,-0.0000417,0.0000118,-3.525296592,0.000486817,neg,ns,-0.004275316,0.003463589,-1.234359996,0.218003671,neg,ns,0.661536194,0.00000574,0.000119113,0.048212504,0.961577931,pos,ns,0.865429683,Ankrd10,Ankrd10_Exon,8,11623799,11623848,11623847,11623848,50,+,ATGGAATGCTCCCCCTTTCTAGGATTACTTGAAAAAATCAAGTCAATTCG,"Exon (Ankrd10-206/Ankrd10, exon 4 of 7)",8,11611583,11635754,24172,2,Ankrd10-204,11906,Ankrd10-204;Ankrd10-202;Ankrd10-201;Ankrd10-206;Ankrd10-209;Ankrd10-208;Ankrd10-203;Ankrd10-207;Ankrd10-205,Ankrd10;Ankrd10;Ankrd10;Ankrd10;Ankrd10;Ankrd10;Ankrd10;Ankrd10;Ankrd10,0;0;0;0;0;0;0;11906;10102,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,102334,ENSMUSG00000031508,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24000,cg18368305,0.00000925,0.00000532,1.738080458,0.083189608,gain,ns,-0.0000319,0.00000905,-3.524781183,0.000487728,neg,ns,0.018716877,0.002650025,7.06290583,1.08E-11,pos,yes,10.96750246,-0.000583443,0.0000911,-6.402029075,5.67E-10,neg,yes,0.869966003,Atxn2,Atxn2_threeUTR,5,121813401,121813450,121813449,121813450,50,+,GAATGGTTCCTTCTCATCCAACTGCCCATGCGCCAATGATGCTAATGACG,3' UTR,5,121711609,121814950,103342,1,Atxn2-201,101792,Atxn2-201;Atxn2-209;Atxn2-214;Atxn2-215;Atxn2-217;Atxn2-210;Atxn2-203;Atxn2-206;Atxn2-212;Atxn2-211;Atxn2-205;Atxn2-218;Sh2b3-205;Sh2b3-202;Sh2b3-208;Sh2b3-204;Sh2b3-201;Sh2b3-203,Atxn2;Atxn2;Atxn2;Atxn2;Atxn2;Atxn2;Atxn2;Atxn2;Atxn2;Atxn2;Atxn2;Atxn2;Sh2b3;Sh2b3;Sh2b3;Sh2b3;Sh2b3;Sh2b3,0;0;0;11655;11290;0;0;0;2737;2436;0;0;23375;23409;15291;22654;23400;23367,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,16,20239,ENSMUSG00000042605,conserved gene and region,5,121813431,121813604,174,*,174,15,0.632183908,0.881458967,0.086206897,8.65E-11,CpGisland,TRUE,U10,Tr-S
6106,cg00554332,0.00000188,0.0000311,0.060695069,0.951641169,gain,ns,0.000185951,0.0000528,3.524529877,0.000488173,pos,ns,-0.005250781,0.015456623,-0.339710731,0.734304422,neg,ns,0.134123856,0.000686268,0.000531552,1.291064751,0.197643155,pos,ns,0.727128918,Rpl17-ps9,Rpl17-ps9_Intergenic_upstream,7,36071722,36071771,36071770,36071771,50,+,AGTTTCAAATCCTAATGAATGGTTTAGACAGCATTGTCATCAATTTTCCG,Distal Intergenic,7,36118274,36118828,555,1,Rpl17-ps9-201,-46503,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,14,22,100043872,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27251,cg01813294,-0.00000161,0.00000688,-0.23457611,0.814692611,loss,ns,0.0000412,0.0000117,3.523380299,0.000490213,pos,ns,0.009719049,0.003422553,2.839707451,0.004813954,pos,ns,2.317498053,-0.0000296,0.000117701,-0.251637389,0.80148809,neg,ns,0.847620206,Nhs,Nhs_Promoter,X,162159854,162159903,162159902,162159903,50,-,GGGTGGGTGGGTGTGAGTGTGTGCGCGCGCCTCAGTTTGAAAGTACCCCG,Promoter (<=1kb),20,161833296,162159730,326435,2,Nhs-202,-173,Nhs-202;Nhs-201,Nhs;Nhs,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,12,195727,ENSMUSG00000059493,conserved gene and region,X,162159877,162160230,354,*,354,39,0.700564972,0.909486166,0.110169492,1.06E-31,CpGisland,TRUE,U3,Pr-B
1994,cg22987615,0.0000563,0.0000159,3.536038714,0.000468184,gain,ns,0.0000952,0.000027,3.521071616,0.000494334,pos,ns,0.021156681,0.00791984,2.671352098,0.007953669,pos,ns,2.099432477,-0.000459841,0.000272363,-1.688342125,0.092351219,neg,ns,0.509396428,Ndp,Ndp_fiveUTR,X,16911603,16911652,16911651,16911652,50,-,AGAGAATGTCAAATGGAAAAGTGCCATTGCAGTCATATATCAATCAGGCG,Promoter (<=1kb),20,16885521,16911774,26254,2,Ndp-201,122,Ndp-201,Ndp,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,5,17986,ENSMUSG00000040138,conserved gene but different region,X,16911651,16911744,94,*,94,8,0.595744681,0.960408685,0.085106383,0.00000736,CpGisland,TRUE,NA,NRS
26005,cg26448296,0.0000246,0.0000181,1.363037649,0.173859848,gain,ns,0.000108077,0.0000307,3.520345091,0.000495638,pos,ns,0.035561633,0.008994299,3.953796951,0.0000953,pos,ns,4.020686354,-0.000973953,0.000309313,-3.14875839,0.00179934,neg,ns,0.394347003,Ammecr1,Ammecr1_Exon,X,142966235,142966284,142966235,142966236,50,-,CGGGGCTGCTGGTATCCATACAGGTGACAGTAGAGCACATCGAAGCAAAA,Promoter (<=1kb),20,142851146,142966728,115583,2,Ammecr1-201,444,Ammecr1-201,Ammecr1,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,8,56068,ENSMUSG00000042225,conserved gene and region,X,142966115,142967008,894,*,894,109,0.730425056,0.91412758,0.121923937,5.25E-93,CpGisland,TRUE,U1,Pr-A
7861,cg07849666,0.000277955,0.000128385,2.165003205,0.031150158,gain,ns,0.000767803,0.00021811,3.520259632,0.000495791,pos,ns,0.19046662,0.063898734,2.980757315,0.003103013,pos,ns,2.508216469,-0.004282329,0.002197472,-1.948752239,0.052226908,neg,ns,0.404673951,Gtdc1,Gtdc1_threeUTR,2,44565286,44565335,44565286,44565287,50,+,CGCCACAGGTTTGTGGCAGATGGCTCTGTGTCAGCTATGACAAGCAGCCA,3' UTR,2,44564412,44861622,297211,2,Gtdc1-203,296287,Gtdc1-203;Gtdc1-201;Gtdc1-207,Gtdc1;Gtdc1;Gtdc1,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,43,227835,ENSMUSG00000036890,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27664,cg20218251,-0.0000229,0.00000545,-4.202517397,0.0000346,loss,ns,-0.0000326,0.00000927,-3.520121281,0.00049604,neg,ns,-0.000140354,0.002714471,-0.051705928,0.958796315,neg,ns,0.018273644,0.00000383,0.0000934,0.041018407,0.967307626,pos,ns,0.888010373,Sdccag8,Sdccag8_Intron,1,176946314,176946363,176946362,176946363,50,-,AACACCTGTAACCTTTGGCTGGCCGAAGGGAGCAGATGCTAACTACACCG,"Intron (Sdccag8-204/Sdccag8, intron 15 of 16)",1,176814660,176956360,141701,1,Sdccag8-204,131654,Sdccag8-204;Sdccag8-201;Sdccag8-203,Sdccag8;Sdccag8;Sdccag8,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,20,76816,ENSMUSG00000026504,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2634,cg23218273,0.00000634,0.0000058,1.092975313,0.275253255,gain,ns,-0.0000347,0.00000986,-3.520029222,0.000496205,neg,ns,-0.011525372,0.00288873,-3.989770732,0.0000826,neg,ns,4.083090026,0.000160802,0.0000993,1.618651363,0.106539214,pos,ns,0.808395096,Camk2g,Camk2g_Exon,14,20747792,20747841,20747840,20747841,50,-,GGCGATGGGTGGGCAGGCAAGGCTCACCATTAGGTGCACGCTGGAACTCG,"Exon (Camk2g-201/Camk2g, exon 14 of 21)",14,20734875,20794051,59177,2,Camk2g-203,46210,Camk2g-203;Camk2g-201;Camk2g-202;Camk2g-217;Camk2g-209;Camk2g-204;Camk2g-212;Camk2g-211;Camk2g-214,Camk2g;Camk2g;Camk2g;Camk2g;Camk2g;Camk2g;Camk2g;Camk2g;Camk2g,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,15,12325,ENSMUSG00000021820,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1305,cg01504682,0.0000486,0.000028,1.732031443,0.084262675,gain,ns,-0.000167593,0.0000476,-3.517442394,0.000500878,neg,ns,-0.009040639,0.013958761,-0.647667721,0.517679243,neg,ns,0.285939248,-0.000467949,0.000480041,-0.974811877,0.330413632,neg,ns,0.099870278,Fezf2,Fezf2_Intergenic_downstream,14,12340380,12340429,12340380,12340381,50,+,CGAGGACGCTCTCCTTTCAGGAAATGGAATTCTAATGTACGCGTTCCTAT,Downstream (1-2kb),14,12342094,12345844,3751,2,Fezf2-203,5415,Fezf2-203;Fezf2-201;Fezf2-202,Fezf2;Fezf2;Fezf2,0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,21,45,54713,ENSMUSG00000021743,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
26364,cg12654165,0.0000265,0.000017,1.555747286,0.120788486,gain,ns,0.000101684,0.0000289,3.51665084,0.000502316,pos,ns,0.001663091,0.008471096,0.196325319,0.844484183,pos,ns,0.07340848,-0.0000472,0.00029132,-0.162189299,0.87126245,neg,ns,0.735335162,Htr2c,Htr2c_Exon,X,147169666,147169715,147169666,147169667,50,+,CGCTGGATCGGTATGTAGCAATACGTAATCCTATTGAGCATAGCCGTTTC,"Exon (Htr2c-201/Htr2c, exon 5 of 6)",20,146962513,147197274,234762,1,Htr2c-201,207153,Htr2c-201;Htr2c-202;Htr2c-207;Htr2c-203,Htr2c;Htr2c;Htr2c;Htr2c,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,8,15560,ENSMUSG00000041380,conserved gene and region,X,147169604,147169752,149,*,149,10,0.483221477,1.157731158,0.067114094,0.00000263,CpGisland,TRUE,U15,NS
8175,cg23407105,-0.00000517,0.0000028,-1.842083614,0.066417897,loss,ns,-0.0000168,0.00000476,-3.516275444,0.000502999,neg,ns,-0.000645676,0.001395957,-0.462533298,0.644023412,neg,ns,0.191098345,-0.0000137,0.000048,-0.285413587,0.775517901,neg,ns,0.872903883,Kmt2a,Kmt2a_threeUTR,9,44826821,44826870,44826869,44826870,50,+,CCAGCTGCTTGCCCCTGATCACAGCCATATGCACATTCTTTAGTGATCCG,3' UTR,9,44803355,44881296,77942,2,Kmt2a-201,54426,Kmt2a-201;Kmt2a-202;Kmt2a-205,Kmt2a;Kmt2a;Kmt2a,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,10,214162,ENSMUSG00000002028,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21593,cg13166264,0.000230477,0.0000231,9.994201941,1.44E-20,gain,yes,-0.00013769,0.0000392,-3.514489023,0.000506263,neg,ns,0.049635753,0.011477745,4.324521182,0.0000206,pos,ns,4.685439745,-0.002964219,0.000394719,-7.509700316,6.36E-13,neg,yes,0.499021493,Itpr1,Itpr1_Intron,6,108482708,108482757,108482756,108482757,50,+,TCTGAAACTAGAGATTTTCATCTGTCTTTTATTCTTACCACTTTCTCACG,"Intron (Itpr1-201/Itpr1, intron 47 of 61)",6,108213096,108551109,338014,1,Itpr1-201,269612,Itpr1-201;Itpr1-205,Itpr1;Itpr1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,5,16438,ENSMUSG00000030102,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26297,cg01766859,0.000154071,0.0000103,14.94291261,2.11E-38,gain,yes,-0.0000615,0.0000175,-3.513639495,0.000507822,neg,ns,-0.002468515,0.005131713,-0.481031258,0.630833618,neg,ns,0.200085171,0.00021565,0.000176479,1.221955226,0.222652907,pos,ns,0.545025892,Ralgapa2,Ralgapa2_Intron,2,146302283,146302332,146302331,146302332,50,-,CAACAGTGGAATTTGTGTCATCATGACCAAATGATTACGGTGCAAACCCG,"Intron (Ralgapa2-202/Ralgapa2, intron 38 of 40)",2,146239879,146512004,272126,2,Ralgapa2-202,209672,Gm14117-201;Ralgapa2-202;Ralgapa2-211;Ralgapa2-210;Ralgapa2-205;Ralgapa2-208,Gm14117;Ralgapa2;Ralgapa2;Ralgapa2;Ralgapa2;Ralgapa2,-3215;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,26,241694,ENSMUSG00000037110,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5856,cg08635620,0.0000484,0.00000823,5.885270915,1.03E-08,gain,yes,0.0000491,0.000014,3.513086397,0.000508839,pos,ns,0.011961852,0.004094185,2.921668422,0.003737389,pos,ns,2.427431649,-0.000144301,0.000140799,-1.024876456,0.306220548,neg,ns,0.595276363,Kirrel3,Kirrel3_Exon,9,35035097,35035146,35035145,35035146,50,-,CAGCAGCTCCTTCCTGGACACGCAGTGTGACAGCAGCGTCAGCAGCAGCG,"Exon (Kirrel3-202/Kirrel3, exon 17 of 17)",9,34486126,35035280,549155,1,Kirrel3-202,548971,Kirrel3-202;Kirrel3-206;Kirrel3-209;Kirrel3-201;Kirrel3-208;Kirrel3-205;Kirrel3-207,Kirrel3;Kirrel3;Kirrel3;Kirrel3;Kirrel3;Kirrel3;Kirrel3,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,21,67703,ENSMUSG00000032036,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11359,cg15498790,-0.000019,0.0000144,-1.317311516,0.188707043,loss,ns,-0.000086,0.0000245,-3.512097244,0.000510663,neg,ns,0.056877337,0.007173864,7.928410358,4.05E-14,pos,yes,13.39259848,-0.001614464,0.000246709,-6.544013201,2.48E-10,neg,yes,0.746156033,Clk3,Clk3_Exon,9,57758831,57758880,57758831,57758832,50,+,CGGTGGGTTGGTTGGTTGGATTTTCCAGATCCCAGCATTTCATAAGGCAC,"Exon (Clk3-207/Clk3, exon 3 of 12)",9,57750624,57765103,14480,2,Clk3-207,6223,Clk3-207;Clk3-201;Clk3-205;Clk3-203;Clk3-206;Clk3-209;Clk3-208;Clk3-204,Clk3;Clk3;Clk3;Clk3;Clk3;Clk3;Clk3;Clk3,0;0;0;0;-3510;0;5428;5973,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,14,102414,ENSMUSG00000032316,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
23443,cg24128008,0.0000195,0.00000997,1.955179228,0.051460214,gain,ns,0.0000595,0.0000169,3.511637431,0.000511514,pos,ns,0.010797086,0.004963522,2.175286924,0.030364014,pos,ns,1.517640811,-0.000221862,0.000170695,-1.299755199,0.194650536,neg,ns,0.885626242,Gm5672,Gm5672_Intergenic_upstream,14,118436267,118436316,118436267,118436268,50,+,CGGCGTGTGAATAATTACAAAGTAGCAAGTATTTTTACATACAGCAAATA,Distal Intergenic,14,118375261,118376194,934,2,Gm5672-201,-60073,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,9,435422,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
27617,cg01579428,-0.00000788,0.0000114,-0.692706378,0.489012424,loss,ns,0.0000679,0.0000193,3.510926977,0.00051283,pos,ns,0.018938474,0.005662102,3.344777883,0.000924622,pos,ns,3.034035986,-0.00034124,0.000194719,-1.752470239,0.080681598,neg,ns,0.343518438,Kcnj9,Kcnj9_Exon,1,172326070,172326119,172326070,172326071,50,-,CGAGATCTTGACGAACATGCAGCCCACCATGAAGGCGTTCACCATGGAGC,"Exon (Kcnj9-201/Kcnj9, exon 3 of 4)",1,172320501,172329318,8818,2,Kcnj9-201,3199,Kcnj9-201;Kcnj9-202;Kcnj9-203,Kcnj9;Kcnj9;Kcnj9,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,6,16524,ENSMUSG00000038026,conserved gene and region,1,172325701,172326106,406,*,406,49,0.642857143,1.182758621,0.120689655,7.23E-42,CpGisland,TRUE,U3,Pr-B
6884,cg01107103,0.00000221,0.0000187,0.11811452,0.906053414,gain,ns,0.000111591,0.0000318,3.510665269,0.000513315,pos,ns,0.013825325,0.00931232,1.484627399,0.138658651,pos,ns,0.858053028,0.000155156,0.00032025,0.484484789,0.628383981,pos,ns,0.836555098,Gm12131,Gm12131_Intergenic_downstream,11,39228571,39228620,39228619,39228620,50,-,CAATAAATCAAAGACATCTGCTTGTCACCACCAGATGCTTGGCCACATCG,Distal Intergenic,11,39727070,39727712,643,2,Gm12131-201,499141,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,4,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11772,cg21768236,0.0000648,0.0000145,4.479047676,0.0000106,gain,ns,-0.0000863,0.0000246,-3.51006388,0.000514433,neg,ns,0.013629022,0.007199182,1.893134862,0.059271121,pos,ns,1.227156858,-0.000911773,0.000247579,-3.682752515,0.000272138,neg,ns,0.359208187,Mbnl1,Mbnl1_Exon,3,60529749,60529798,60529749,60529750,50,-,CGAAAAGCTGCCAAGTTGAAAATGGACGAGTAATCGCCTGCTTTGATTCA,"Exon (Mbnl1-221/Mbnl1, exon 2 of 4)",3,60472830,60595764,122935,1,Mbnl1-222,56919,Mbnl1-222;Mbnl1-221;Mbnl1-216;Mbnl1-220;Mbnl1-211;Mbnl1-204;Mbnl1-201;Mbnl1-209;Mbnl1-202;Mbnl1-225;Mbnl1-217;Mbnl1-203;Mbnl1-218;Mbnl1-208;Mbnl1-219;Mbnl1-214;Mbnl1-207;Mbnl1-205;Mbnl1-212,Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,19,36,56758,ENSMUSG00000027763,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22460,cg20497836,0.00000193,0.00000942,0.204477622,0.83811446,gain,ns,0.0000561,0.000016,3.509337158,0.000515786,pos,ns,0.004260475,0.00468615,0.909163063,0.363970347,pos,ns,0.438933997,-0.0000517,0.000161156,-0.321050498,0.748388456,neg,ns,0.820157235,Gm15500,Gm15500_Promoter,7,114706807,114706856,114706807,114706808,50,+,CGTTTTTAATTGAGAAGAGCATTGCTGTGCATGAGCCAAGAGACTCCTTC,Promoter (<=1kb),7,114705217,114706235,1019,2,Gm15500-202,-572,Gm15500-202;Gm15500-201,Gm15500;Gm15500,-572;-644,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,1,100043295,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15845,cg24147395,0.0000104,0.00000305,3.394909561,0.000775845,gain,ns,-0.0000182,0.00000519,-3.509193852,0.000516054,neg,ns,-0.001783645,0.001519044,-1.174189473,0.241220377,neg,ns,0.617586009,0.0000411,0.0000522,0.787147707,0.431796782,pos,ns,0.922373949,Zc3h15,Zc3h15_Exon,2,83658585,83658634,83658585,83658586,50,-,CGGTGAGGCGGAAAAGAAAAAACCAAAAACTCAAATAGTATGTCCTTTTC,"Exon (Zc3h15-201/Zc3h15, exon 5 of 10)",2,83644435,83664622,20188,1,Zc3h15-201,14150,Zc3h15-201;Zc3h15-203;Zc3h15-202;Zc3h15-207;Zc3h15-205;Zc3h15-204,Zc3h15;Zc3h15;Zc3h15;Zc3h15;Zc3h15;Zc3h15,0;0;0;1965;0;-1376,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,Exon,2,2,69082,ENSMUSG00000027091,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26001,cg27186921,-0.00000705,0.00000331,-2.132191405,0.033776893,loss,ns,0.0000197,0.00000562,3.508935533,0.000516536,pos,ns,0.003115376,0.001645025,1.893816497,0.059180217,pos,ns,1.227823449,0.000025,0.0000566,0.441844475,0.658909815,pos,ns,0.935953146,Ammecr1,Ammecr1_threeUTR,X,142855399,142855448,142855399,142855400,50,+,CGAAGCTTCACCATGGCAACGGAAACTATCATCATAAAATGGTACAGTAA,3' UTR,20,142851146,142966728,115583,2,Ammecr1-201,111280,Ammecr1-201,Ammecr1,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,8,56068,ENSMUSG00000042225,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20108,cg03381157,0.000155399,0.0000162,9.583788094,3.19E-19,gain,yes,-0.0000967,0.0000275,-3.508865746,0.000516666,neg,ns,0.004449057,0.008070274,0.551289526,0.581832341,pos,ns,0.235202142,-0.000327271,0.000277536,-1.179201302,0.239222248,neg,ns,0.558132521,Atf7,Atf7_Intron,15,102594150,102594199,102594198,102594199,50,+,GTGCTCCATTTTACAGGGCCATAATCTGGCTCCCTGGTGTATAAACTACG,"Intron (Gm28047-201/Gm28047, intron 1 of 12)",15,102525946,102625073,99128,2,Atf7-211,30874,Atf7-211;Atf7-210;Atf7-209;Atf7-202;Atf7-203;Atf7-205;Atf7-204;Atf7-206;Atf7-208;Atf7-213;Atf7-212;Atf7-207;Gm28047-201,Atf7;Atf7;Atf7;Atf7;Atf7;Atf7;Atf7;Atf7;Atf7;Atf7;Atf7;Atf7;Gm28047,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,11,223922,ENSMUSG00000099083,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6026,cg04654552,-0.00000439,0.00000319,-1.377777073,0.169265895,loss,ns,-0.000019,0.00000542,-3.508123277,0.000518055,neg,ns,-0.004876564,0.00158709,-3.072644209,0.002310027,neg,ns,2.636382915,0.0000679,0.0000546,1.243174793,0.214742823,pos,ns,0.959804106,Cxxc5,Cxxc5_threeUTR,18,35860747,35860796,35860795,35860796,50,+,TCGTGTGGTCTCCAGCAAGGGATTCGGGCGAAGACAAACGGATGCACCCG,3' UTR,18,35829788,35861688,31901,1,Cxxc5-201,30959,Cxxc5-202;Cxxc5-201;Cxxc5-206;Cxxc5-203;Cxxc5-204;Cxxc5-205,Cxxc5;Cxxc5;Cxxc5;Cxxc5;Cxxc5;Cxxc5,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,7,49,67393,ENSMUSG00000046668,conserved gene and region,18,35860501,35860796,296,*,296,26,0.628378378,0.896447292,0.087837838,1.36E-18,CpGisland,TRUE,U10,Tr-S
24425,cg26814712,-0.00000571,0.00000926,-0.617126753,0.53760412,loss,ns,0.0000552,0.0000157,3.507588538,0.000519057,pos,ns,0.009622363,0.004607538,2.088395707,0.03757784,pos,ns,1.42506819,-0.000054,0.000158453,-0.34107955,0.73327475,neg,ns,0.159122218,Shc4,Shc4_Exon,2,125723283,125723332,125723283,125723284,50,-,CGGCTGTACTTGGCCCTGTGCAGCATCCCGGGGTGCCCGAAGAGTCCTAC,Promoter (<=1kb),2,125627447,125723387,95941,2,Shc4-201,55,Shc4-201;Shc4-204,Shc4;Shc4,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,271849,ENSMUSG00000035109,conserved gene and region,2,125723112,125723284,173,*,173,14,0.658959538,0.76043956,0.080924856,1.01E-09,CpGisland,TRUE,U3,Pr-B
3569,cg13710662,-0.0000193,0.0000141,-1.375294327,0.170033239,loss,ns,0.0000837,0.0000239,3.506631922,0.000520854,pos,ns,0.012996387,0.006996792,1.857478119,0.064191296,pos,ns,1.192523856,0.000000838,0.000240619,0.003482771,0.997223396,pos,ns,0.37544514,Iqca1l,Iqca1l_Intron,5,24551189,24551238,24551189,24551190,50,-,CGCAGAGACAATTACTGAAAACGCTGAGCTCACACTGTTGATAGGCCCGG,"Intron (Iqca1l-201/Iqca1l, intron 5 of 18)",5,24543432,24555410,11979,2,Iqca1l-201,4172,Iqca1l-201;Iqca1l-205;Iqca1l-204;Iqca1l-203;Iqca1l-202,Iqca1l;Iqca1l;Iqca1l;Iqca1l;Iqca1l,0;0;0;4231;5571,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,4,231045,ENSMUSG00000038199,conserved gene and region,5,24550952,24551241,290,*,290,17,0.582758621,0.703481735,0.05862069,1.75E-09,CpGisland,TRUE,U13,Hc-P
16459,cg06787971,-0.0000951,0.0000121,-7.870858769,5.95E-14,loss,yes,0.000072,0.0000205,3.506527651,0.00052105,pos,ns,0.022230319,0.006013612,3.696666619,0.000258251,pos,ns,3.587957276,-0.000684203,0.000206808,-3.308404579,0.001048753,neg,ns,0.669857688,Dmd,Dmd_Intron,X,85041606,85041655,85041654,85041655,50,+,CTCAGAATGAATTCACTAATTGGGGTTTTCACCTGCTGTGAGTCTAATCG,"Intron (Dmd-203/Dmd, intron 62 of 78)",20,82948903,85206141,2257239,1,Dmd-203,2092703,Dmd-203;Dmd-215;Dmd-210,Dmd;Dmd;Dmd,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,28,13405,ENSMUSG00000045103,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5378,cg14082100,0.0000289,0.00000341,8.460757237,1.07E-15,gain,yes,-0.0000203,0.0000058,-3.504417622,0.000525037,neg,ns,-0.004579178,0.001697905,-2.696957382,0.00738031,neg,ns,2.131925398,0.000182161,0.0000584,3.119692412,0.001980604,pos,ns,0.907508812,Hnrnpm,Hnrnpm_Exon,17,33665533,33665582,33665581,33665582,50,+,GTGCCTATTCCACGACTTTTTCCATCTTTATCTTCAAGAATGTCTGCTCG,"Exon (Hnrnpm-206/Hnrnpm, exon 7 of 16)",17,33646233,33686860,40628,2,Hnrnpm-206,21278,Hnrnpm-206;Hnrnpm-202;Hnrnpm-205;Hnrnpm-201;Hnrnpm-207;Hnrnpm-212;Hnrnpm-215;Hnrnpm-208;Hnrnpm-209,Hnrnpm;Hnrnpm;Hnrnpm;Hnrnpm;Hnrnpm;Hnrnpm;Hnrnpm;Hnrnpm;Hnrnpm,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,7,76936,ENSMUSG00000059208,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22609,cg19515043,-0.0000765,0.0000105,-7.263131634,3.08E-12,loss,yes,-0.0000626,0.0000179,-3.501993647,0.000529652,neg,ns,0.019086651,0.005239897,3.642562087,0.000316303,pos,ns,3.499897136,-0.000689802,0.0001802,-3.827987163,0.000156303,neg,ns,0.888581321,Kctd2,Kctd2_Exon,11,115429330,115429379,115429378,115429379,50,-,ATTCCTCTGTGTTGTCTCCAGAGAACTAAATAATTCTACCAATGGCATCG,Promoter (<=1kb),11,115429353,115430201,849,1,Kctd2-204,0,Kctd2-201;Kctd2-202;Kctd2-203;Kctd2-204,Kctd2;Kctd2;Kctd2;Kctd2,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,70382,ENSMUSG00000016940,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14558,cg04037898,-0.0000021,0.00000184,-1.140897672,0.254793112,loss,ns,0.0000109,0.00000313,3.501777236,0.000530065,pos,ns,0.001505403,0.000916011,1.643433259,0.101307123,pos,ns,0.994360016,-0.0000166,0.0000315,-0.526046202,0.599232227,neg,ns,0.943363001,Gm50360,Gm50360_Intergenic_downstream,18,76438674,76438723,76438674,76438675,50,-,CGACATTAAACCGCATTGGCTATGGAAGAGTCTTTGATTGTCATTGAGAT,Distal Intergenic,18,76321824,76322259,436,1,Gm50360-201,116899,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,10,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3004,cg02157959,0.000063,0.0000148,4.268134531,0.0000262,gain,ns,0.0000878,0.0000251,3.501553546,0.000530494,pos,ns,0.022418697,0.007348365,3.050841725,0.002479176,pos,ns,2.605692612,-0.000069,0.00025271,-0.273043547,0.785001545,neg,ns,0.712617509,Lrmda,Lrmda_Intron,14,22307283,22307332,22307331,22307332,50,+,AGGGCATCAGTAATCTTTGCTCAAGGGCACGGCTAACAGACAGATAGACG,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,287571,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206;Lrmda-202,Lrmda;Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26958,cg16873695,-0.00000177,0.00000527,-0.335089794,0.737783983,loss,ns,0.0000313,0.00000896,3.500686591,0.000532156,pos,ns,0.004529363,0.002623543,1.726429857,0.085266382,pos,ns,1.069222163,0.00000019,0.0000902,0.002102371,0.998323904,pos,ns,0.928517981,Ptchd1,Ptchd1_threeUTR,X,155574694,155574743,155574742,155574743,50,+,ACTACAAAAGGCTTGACATAGGTGTTGGTTATCCAGTCACAGTAATAGCG,3' UTR,20,155573455,155623325,49871,2,Ptchd1-201,48582,Ptchd1-201;Ptchd1-203,Ptchd1;Ptchd1,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,11,211612,ENSMUSG00000041552,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26054,cg24780501,-0.000000642,0.0000116,-0.05544281,0.955821406,loss,ns,0.0000688,0.0000197,3.500221005,0.00053305,pos,ns,-0.004306879,0.005762278,-0.747426583,0.455372664,neg,ns,0.341633043,0.000336056,0.000198164,1.695843817,0.090919437,pos,ns,0.567033079,Cdkn1c,Cdkn1c_Intergenic_downstream,7,143445113,143445162,143445161,143445162,50,+,TGTGATGCGTGGGCTGTCGGGACATCTGTCTTCTATACCTAATAAAGTCG,Distal Intergenic,7,143458722,143459311,590,2,Cdkn1c-204,14149,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,5,12577,ENSMUSG00000037664,mapped to different genes,7,143445084,143445200,117,*,117,9,0.504273504,1.210344828,0.076923077,0.00000341,CpGisland,TRUE,U13,Hc-P
847,cg20095345,-0.0000215,0.00000728,-2.956743806,0.00334787,loss,ns,0.0000433,0.0000124,3.500214081,0.000533064,pos,ns,0.008350841,0.003624524,2.303982904,0.021884683,pos,ns,1.659859741,-0.000110898,0.000124647,-0.889694644,0.374319767,neg,ns,0.128303257,Gm49447,Gm49447_Intergenic_upstream,16,9009403,9009452,9009451,9009452,50,+,TCCAAGAAATGCAGCTAAAATTGGCCCTCAAACAGCTTTTGCAGAGCACG,Distal Intergenic,16,8996088,8996396,309,2,Gm49447-201,-13007,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21588,cg00364500,0.000000766,0.00000359,0.21329784,0.831234864,gain,ns,0.0000214,0.0000061,3.499553749,0.000534335,pos,ns,0.001193501,0.001787685,0.667623569,0.504870604,pos,ns,0.296819915,0.0000266,0.0000615,0.432664653,0.665559254,pos,ns,0.952337762,Zfhx3,Zfhx3_Intron,8,108468015,108468064,108468063,108468064,50,-,ATTAAACTGTGACACAAAGATATTATACCGTTAGTTTACTAATGACACCG,"Intron (Zfhx3-204/Zfhx3, intron 3 of 15)",8,107942644,108961630,1018987,1,Zfhx3-204,525371,Zfhx3-204,Zfhx3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,114,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6819,cg16692605,0.0000154,0.00000432,3.566213229,0.000419359,gain,ns,-0.0000257,0.00000734,-3.498322258,0.000536714,neg,ns,-0.002307275,0.002150007,-1.073147715,0.284039499,neg,ns,0.546621261,0.0000136,0.0000739,0.183451033,0.854564066,pos,ns,0.754591526,Psmb7,Psmb7_Intron,2,38595094,38595143,38595142,38595143,50,+,TACATGACAAATGGGCAGCACTTGTAAAAGGCACAAAGAGGTCCACGTCG,"Intron (Psmb7-201/Psmb7, intron 6 of 7)",2,38588036,38644087,56052,2,Psmb7-201,48944,Nek6-201;Psmb7-201,Nek6;Psmb7,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,9,19177,ENSMUSG00000026750,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16411,cg23963256,0.00000262,0.00000514,0.509738475,0.610597386,gain,ns,0.0000306,0.00000874,3.497773362,0.000537777,pos,ns,0.006809048,0.002559181,2.660635646,0.008205309,pos,ns,2.085905081,-0.000203335,0.000088,-2.31036132,0.021524489,neg,ns,0.562957303,Fbxw7,Fbxw7_Exon,3,84925743,84925792,84925791,84925792,50,+,ATGAAGATATTTAGCATTAGCATCATTGCCCAAGGCCTCCCTTTTTGTCG,"Exon (Fbxw7-202/Fbxw7, exon 1 of 11)",3,84815268,84979198,163931,1,Fbxw7-204,110475,Fbxw7-204;Fbxw7-205;Fbxw7-203;Fbxw7-202;Gm37240-203,Fbxw7;Fbxw7;Fbxw7;Fbxw7;Gm37240,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,10,50754,ENSMUSG00000028086,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17796,cg19128960,0.0000104,0.00000686,1.518450288,0.12992008,gain,ns,-0.0000407,0.0000116,-3.497744398,0.000537833,neg,ns,-0.010730621,0.00341261,-3.144402597,0.001825491,neg,ns,2.738620303,0.000370964,0.000117359,3.160924164,0.001728122,pos,ns,0.709925157,Twist2,Twist2_Intergenic_upstream,1,91760315,91760364,91760315,91760316,50,+,CGACTTTCTGTGCAAATCTTATGGAATGCGGCATTCCAGACTTTAAAGGG,Distal Intergenic,1,91801461,91848028,46568,1,Twist2-201,-41097,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,2,13345,ENSMUSG00000007805,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2259,cg11820374,0.0000126,0.00000638,1.981166548,0.048455956,gain,ns,0.0000379,0.0000108,3.497673838,0.00053797,pos,ns,0.011691051,0.003173185,3.684327321,0.000270532,pos,ns,3.567781897,-0.000167955,0.000109126,-1.539096824,0.124800734,neg,ns,0.147567389,Meis1,Meis1_Intergenic_downstream,11,18874720,18874769,18874768,18874769,50,+,CCCCCCTAACAATCCAGGAGCCCAGGGGCTCCGGGGGCTGAACACAGTCG,Distal Intergenic,11,18880668,19012002,131335,2,Meis1-203,137233,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,88,17268,ENSMUSG00000020160,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22871,cg02434996,0.0000313,0.00000504,6.221766298,1.59E-09,gain,yes,-0.0000299,0.00000856,-3.496241976,0.000540754,neg,ns,-0.004094466,0.002507733,-1.632735772,0.103539848,neg,ns,0.984892477,0.0000813,0.0000862,0.942665499,0.346586071,pos,ns,0.856301984,Unk,Unk_Exon,11,116058250,116058299,116058250,116058251,50,-,CGGGATGAACAGCAGCATCTGGGAGCATTTTGCCTCTGGAAGCTTCTCCC,"Exon (Unk-201/Unk, exon 14 of 16)",11,116030322,116061214,30893,1,Unk-201,27928,Unc13d-202;Unc13d-201;Unc13d-203;Unc13d-207;Unc13d-209;Unk-201;Unk-202;Unk-204;Unk-206;Unk-205;Unk-203,Unc13d;Unc13d;Unc13d;Unc13d;Unc13d;Unk;Unk;Unk;Unk;Unk;Unk,0;0;0;0;0;0;0;0;8951;4955;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,217331,ENSMUSG00000020770,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23611,cg26300812,0.00015147,0.000021,7.227115727,3.86E-12,gain,yes,0.000124452,0.0000356,3.495266789,0.000542658,pos,ns,0.03077452,0.010431315,2.950205245,0.003417538,pos,ns,2.466286606,-0.000489585,0.000358732,-1.364764272,0.173316907,neg,ns,0.155527333,Dll4,Dll4_Promoter,2,119322259,119322308,119322307,119322308,50,-,GCTGCATTAAATTGTAAAATCGATTTATTGACCGGCAGGTGCGAGCAGCG,Promoter (3-4kb),2,119325784,119335962,10179,1,Dll4-201,-3525,Dll4-201,Dll4,0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,8,20,54485,ENSMUSG00000027314,conserved gene and region,2,119322082,119322448,367,*,367,37,0.632152589,1.026301867,0.100817439,1.47E-28,CpGisland,TRUE,U3,Pr-B
8008,cg20032980,-0.000046,0.0000115,-4.005394822,0.0000776,loss,ns,0.0000682,0.0000195,3.49428071,0.00054459,pos,ns,-0.005411427,0.005721026,-0.94588393,0.344944469,neg,ns,0.462250814,0.000116494,0.000196746,0.592106188,0.554211077,pos,ns,0.548038342,Pax2,Pax2_Intergenic_upstream,19,44681903,44681952,44681903,44681904,50,+,CGGGGCCCCTCGCTAATGTAAGGTTATTGTAATTGATATGAAGGTAATTG,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-74093,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
1318,cg18284930,0.0000414,0.00000476,8.689646168,2.14E-16,gain,yes,-0.0000283,0.00000809,-3.49334559,0.000546427,neg,ns,0.001058592,0.002370999,0.446475198,0.655565744,pos,ns,0.183383748,0.000174591,0.0000815,2.141214614,0.033036223,pos,ns,0.090172652,Fezf2,Fezf2_fiveUTR,14,12345673,12345722,12345673,12345674,50,-,CGCGTGAGATCACTGTCTTTTACATTCAGCTGACATCACATGAAGTCACT,Promoter (<=1kb),14,12342094,12345844,3751,2,Fezf2-203,122,Fezf2-203;Fezf2-201;Fezf2-202,Fezf2;Fezf2;Fezf2,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,13,45,54713,ENSMUSG00000021743,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
20,cg08620960,0.00000432,0.0000029,1.490000033,0.137240941,gain,ns,-0.0000172,0.00000493,-3.492215305,0.000548656,neg,ns,-0.003853591,0.001444351,-2.668043208,0.008030616,neg,ns,2.095251144,0.000102835,0.0000497,2.070310634,0.039250961,pos,ns,0.912366677,Patz1,Patz1_Exon,11,3306318,3306367,3306366,3306367,50,-,GGGGGAGCAGCGTTCCACTGCGCCAGGACCTATGGCAACAAAGGCAAGCG,"Exon (Patz1-207/Patz1, exon 5 of 6)",11,3289167,3309083,19917,1,Patz1-204,17151,Patz1-204;Patz1-207;Patz1-205;Patz1-201;Patz1-202;Patz1-206;Patz1-212,Patz1;Patz1;Patz1;Patz1;Patz1;Patz1;Patz1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,9,56218,ENSMUSG00000020453,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13886,cg26736130,-0.00000734,0.00000857,-0.856604638,0.392325093,loss,ns,0.0000508,0.0000146,3.492123255,0.000548838,pos,ns,0.006033194,0.004265392,1.41445237,0.158232706,pos,ns,0.800703745,-0.0000673,0.000146686,-0.458512103,0.646905844,neg,ns,0.144384744,Sp9,Sp9_Promoter,2,73268933,73268982,73268933,73268934,50,-,CGACATTTAATAGTGCTAATTGCACTCCAGTTAAATTGCCCTGATTGCAG,Promoter (2-3kb),2,73271925,73277471,5547,1,Sp9-201,-2992,Sp9-201;Sp9-202,Sp9;Sp9,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,6,21,381373,ENSMUSG00000068859,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
18987,cg07885525,0.0000689,0.0000128,5.380022511,0.000000147,gain,yes,-0.000076,0.0000218,-3.491741187,0.000549594,neg,ns,-0.014841644,0.00637791,-2.327038741,0.020607106,neg,ns,1.685983001,0.000470479,0.000219336,2.145015228,0.032728456,pos,ns,0.80522,Nfia,Nfia_threeUTR,4,98113982,98114031,98114030,98114031,50,+,GTCAATCCACATTCAATAAAAAGTATATAATGCCCATTTTTATATGCACG,3' UTR,4,97777608,98118871,341264,1,Nfia-202,336374,Nfia-202;Nfia-203;Nfia-205;Nfia-201;Nfia-204,Nfia;Nfia;Nfia;Nfia;Nfia,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,8,44,18027,ENSMUSG00000028565,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22502,cg06033025,0.0000164,0.00000397,4.144122855,0.0000441,gain,ns,-0.0000235,0.00000674,-3.491316222,0.000550435,neg,ns,-0.000288874,0.00197498,-0.146266973,0.883805705,neg,ns,0.053643199,-0.000029,0.0000679,-0.427688259,0.669175044,neg,ns,0.919389229,Gm13973,Gm13973_Intron,2,114873018,114873067,114873018,114873019,50,+,CGGAAGATCTGTAGTGGTATAATGTGCCAAGCTATATGATACTGTTGGTT,"Intron (Gm13974-201/Gm13974-201, intron 2 of 8)",2,115036419,115037312,894,2,Gm13973-201,164245,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,13,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14827,cg08072036,0.000214718,0.0000142,15.09681462,5.51E-39,gain,yes,-0.0000844,0.0000242,-3.490975099,0.000551112,neg,ns,0.015655641,0.0070788,2.211623696,0.027721869,pos,ns,1.557177497,-0.000320954,0.000243439,-1.318414801,0.188338079,neg,ns,0.418370894,Fam172a,Fam172a_Intron,13,77892540,77892589,77892540,77892541,50,-,CGGAGCATTGTTTGATTTGAAGCAGTTCCCTGTGTATAATTGCACTTTGA,"Intron (Fam172a-203/Fam172a, intron 6 of 10)",13,77708690,78163655,454966,1,Fam172a-203,183850,Fam172a-203;Fam172a-201;Fam172a-202;Fam172a-209;Fam172a-205;Fam172a-207;Fam172a-208,Fam172a;Fam172a;Fam172a;Fam172a;Fam172a;Fam172a;Fam172a,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,24,68675,ENSMUSG00000064138,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26209,cg06064644,0.000124072,0.0000105,11.78484078,9.73E-27,gain,yes,-0.0000624,0.0000179,-3.490273523,0.000552506,neg,ns,-0.008386598,0.005239928,-1.600517945,0.110502291,neg,ns,0.956628719,0.000319731,0.000180201,1.774303425,0.076994411,pos,ns,0.525458168,Sox5,Sox5_Intron,6,144454415,144454464,144454415,144454416,50,-,CGGTAGGGATCAAACACTGGAGACGTCCTAAAACTCCCACAGAGAAGATG,"Intron (Sox5-209/Sox5, intron 3 of 13)",6,143843739,144781977,938239,2,Sox5-209,327513,Sox5-209;Sox5-212,Sox5;Sox5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,71,20678,ENSMUSG00000041540,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20850,cg25688663,-0.0000372,0.0000224,-1.665113682,0.09690034,loss,ns,0.000132539,0.000038,3.490149663,0.000552752,pos,ns,-0.002328919,0.011125457,-0.209332433,0.834326228,neg,ns,0.078664103,0.000546833,0.000382604,1.429241725,0.153941678,pos,ns,0.298878976,Pax6,Pax6_Promoter,2,105664683,105664732,105664731,105664732,50,+,AAATGTGCTGTTTTATCCGTACAATTTATTTCATTATTGTTGCCAGCACG,Promoter (4-5kb),2,105668900,105697364,28465,1,Pax6-206,-4168,Pax6-206;Pax6-207;Pax6-210;Pax6-214,Pax6;Pax6;Pax6;Pax6,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,10,78,18508,ENSMUSG00000027168,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
24484,cg16793862,-0.00000657,0.00000392,-1.673171627,0.095302271,loss,ns,-0.0000233,0.00000667,-3.489809343,0.000553429,neg,ns,-0.005236127,0.001953459,-2.680438081,0.007745779,neg,ns,2.110934876,0.0000152,0.0000672,0.226731105,0.820782274,pos,ns,0.860280506,Atxn2l,Atxn2l_Exon,7,126492921,126492970,126492969,126492970,50,-,GTGCAGCAGCATCACCTGGGGCGGGTGGGGAGCCCCAGGGTGAGGGGGCG,"Exon (Atxn2l-201/Atxn2l, exon 22 of 23)",7,126491708,126503437,11730,2,Atxn2l-201,10467,Atxn2l-201;Atxn2l-203;Atxn2l-206;Atxn2l-205;Atxn2l-202;Tufm-201;Tufm-202;Tufm-203;Tufm-204;Tufm-205;Tufm-206,Atxn2l;Atxn2l;Atxn2l;Atxn2l;Atxn2l;Tufm;Tufm;Tufm;Tufm;Tufm;Tufm,0;0;0;0;0;5560;5543;5292;4307;4235;3550,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,13,233871,ENSMUSG00000032637,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27291,cg11106122,0.0000689,0.00000616,11.1791902,1.33E-24,gain,yes,-0.0000365,0.0000105,-3.489596071,0.000553854,neg,ns,-0.003374195,0.003065398,-1.100736398,0.27186537,neg,ns,0.56564611,0.000121563,0.000105419,1.153146311,0.249738688,pos,ns,0.087451943,Prrx1,Prrx1_Exon,1,163312512,163312561,163312560,163312561,50,+,GGTCTAGCAGGTGACTGACGGAGAAGTTCTTTTTCGCCTGCAGGGTGTCG,"Exon (Prrx1-202/Prrx1, exon 1 of 5)",1,163245119,163313672,68554,2,Prrx1-202,1111,Prrx1-202;Prrx1-201;Prrx1-204;Prrx1-203,Prrx1;Prrx1;Prrx1;Prrx1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,11,18933,ENSMUSG00000026586,conserved gene and region,1,163312287,163312621,335,*,335,30,0.689552239,0.785893025,0.089552239,1.24E-21,CpGisland,TRUE,U3,Pr-B
8007,cg15686078,-0.0000589,0.0000127,-4.640045613,0.00000515,loss,ns,0.0000753,0.0000216,3.489595679,0.000553855,pos,ns,-0.001803513,0.006317582,-0.285475232,0.775470724,neg,ns,0.110434594,0.000048,0.000217261,0.221018815,0.825223286,pos,ns,0.343999914,Pax2,Pax2_Intergenic_upstream,19,44681887,44681936,44681887,44681888,50,-,CGGGGCTTGAGGGTCTCGGGGCCCCTCGCTAATGTAAGGTTATTGTAATT,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-74158,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
15375,cg21269362,0.0000511,0.00000508,10.04353633,9.84E-21,gain,yes,-0.0000301,0.00000864,-3.489229078,0.000554586,neg,ns,-0.010618846,0.002530768,-4.195898171,0.0000355,neg,ns,4.449391514,0.000304444,0.000087,3.498032305,0.000537275,pos,ns,0.875828988,Myo1d,Myo1d_Exon,11,80557476,80557525,80557476,80557477,50,-,CGACTCTCATGGGTTGGCTGTTTGCTGAAGAGGCAGACAATGAGGTCTTT,"Exon (Myo1d-201/Myo1d, exon 21 of 22)",11,80482126,80780025,297900,2,Myo1d-201,222500,Myo1d-201,Myo1d,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,338367,ENSMUSG00000035441,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10250,cg21839841,-0.00000613,0.00000198,-3.103930553,0.002085803,loss,ns,-0.0000117,0.00000336,-3.486070593,0.000560924,neg,ns,0.0000632,0.000983242,0.064282323,0.94878686,pos,ns,0.022831339,-0.0000484,0.0000338,-1.430501425,0.153580333,neg,ns,0.951236852,Rab2b,Rab2b_Exon,14,52275444,52275493,52275492,52275493,50,-,GTATCCCAGATTTGCAGTTTGATTTGTTTTCCATCAATGTTGACCATACG,Promoter (<=1kb),14,52264750,52275489,10740,2,Rab2b-205,0,Rab2b-201;Rab2b-203;Rab2b-202;Rab2b-206;Rab2b-204;Rab2b-207;Rab2b-205;Tox4-201;Tox4-203;Tox4-204;Tox4-202,Rab2b;Rab2b;Rab2b;Rab2b;Rab2b;Rab2b;Rab2b;Tox4;Tox4;Tox4;Tox4,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,76338,ENSMUSG00000022159,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8720,cg17695612,-0.00000172,0.000037,-0.046501971,0.962940106,loss,ns,-0.000219009,0.0000628,-3.485827271,0.000561415,neg,ns,0.005359285,0.018406564,0.291161642,0.771122411,pos,ns,0.112876675,-0.000867673,0.000633,-1.370731214,0.171450391,neg,ns,0.836307064,Ddhd1,Ddhd1_threeUTR,14,45610723,45610772,45610723,45610724,50,-,CGATTCAGCTCTTGCTGAAGGCCTTTAACTAGCTGTTTGAAATAAGAAAA,3' UTR,14,45588467,45658142,69676,2,Ddhd1-203,47370,Ddhd1-203;Ddhd1-202;Ddhd1-201;Ddhd1-209;Ddhd1-205;Ddhd1-208;Ddhd1-206;Ddhd1-204,Ddhd1;Ddhd1;Ddhd1;Ddhd1;Ddhd1;Ddhd1;Ddhd1;Ddhd1,0;0;0;0;0;0;0;-1381,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,3,114874,ENSMUSG00000037697,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16722,cg20517637,-0.00000389,0.00000175,-2.22646454,0.026701451,loss,ns,0.0000103,0.00000297,3.485220134,0.000562642,pos,ns,0.001020743,0.000869525,1.173908451,0.241332763,pos,ns,0.617383714,-0.00000673,0.0000299,-0.224928636,0.822182985,neg,ns,0.960140591,Gm49062,Gm49062_Intron,14,86253019,86253068,86253019,86253020,50,-,CGAGATATTTACCATCTGTGTTATGATATCTAATTCACTTGGTTACCTGC,"Intron (4930529K09Rik-201/4930529K09Rik-201, intron 1 of 3)",14,86229612,86229801,190,2,Gm49062-201,-23267,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22722,cg18639088,0.000136246,0.00000813,16.76839479,2.29E-45,gain,yes,-0.0000481,0.0000138,-3.484519122,0.000564061,neg,ns,0.000636948,0.004043969,0.157505586,0.874948946,pos,ns,0.058017288,0.000136977,0.000139072,0.984934738,0.32542422,pos,ns,0.212529555,Meis2,Meis2_Intergenic_downstream,2,115856506,115856555,115856506,115856507,50,-,CGGACTTGGGGTGTGAGCCCAGCTCAACTTCATCTATTAATTTAACATGT,Distal Intergenic,2,115864227,115868867,4641,2,Meis2-219,12361,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,97,17536,ENSMUSG00000027210,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
7158,cg03488359,0.0000685,0.000028,2.444476976,0.015063008,gain,ns,0.000165911,0.0000476,3.482756796,0.000567645,pos,ns,0.021543796,0.013956266,1.543664725,0.123689755,pos,ns,0.907666271,-0.000214306,0.000479955,-0.446512371,0.655538927,neg,ns,0.581799122,Fam219a,Fam219a_Exon,4,41524323,41524372,41524371,41524372,50,-,ACTTGGAGCGGGGATGGTTTGTAATTCATGGCTACTGACTCACCCTCCCG,"Exon (Fam219a-201/Fam219a, exon 2 of 6)",4,41517691,41569509,51819,2,Fam219a-201,45137,Fam219a-201;Fam219a-202;Fam219a-203;Fam219a-204;Fam219a-205,Fam219a;Fam219a;Fam219a;Fam219a;Fam219a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,7,71901,ENSMUSG00000028439,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8712,cg12129962,-0.0000173,0.00000767,-2.250865743,0.025094494,loss,ns,-0.0000453,0.000013,-3.481796036,0.000569608,neg,ns,-0.018720686,0.003815497,-4.906487048,0.0000015,neg,ns,5.823794303,0.000352958,0.000131215,2.689927445,0.007533896,pos,ns,0.805017999,Gm13478,Gm13478_Intergenic_upstream,2,45586897,45586946,45586897,45586898,50,-,CGTAAATTCAGAATGTCACCTTTAGGCAGAGGCATTTTTATTATTGTTAG,Distal Intergenic,2,45647191,45647603,413,1,Gm13478-201,-60294,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,10,100042661,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26712,cg12682061,0.0000347,0.00000543,6.395807395,5.88E-10,gain,yes,-0.0000321,0.00000922,-3.481295301,0.000570634,neg,ns,0.00725936,0.002701524,2.687135139,0.007595695,pos,ns,2.119432487,-0.000098,0.0000929,-1.054689267,0.292388764,neg,ns,0.919386638,Camta1,Camta1_threeUTR,4,151780905,151780954,151780905,151780906,50,-,CGCCCATGAACAAGTGTGTGGTGAGAGCCTGAAATAAATAGGTGTAAAAT,3' UTR,4,150917322,151861669,944348,2,Camta1-211,80715,Camta1-211;Camta1-202;Camta1-201;Camta1-210;Camta1-209,Camta1;Camta1;Camta1;Camta1;Camta1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,22,100072,ENSMUSG00000014592,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17418,cg00467357,0.0000331,0.00000876,3.779767115,0.000188259,gain,ns,-0.0000518,0.0000149,-3.48084314,0.000571561,neg,ns,0.025360669,0.004361408,5.814789015,1.51E-08,pos,ns,7.821059922,-0.00061004,0.000149988,-4.067244938,0.0000604,neg,ns,0.865558908,Picalm,Picalm_Exon,7,90194248,90194297,90194296,90194297,50,+,TAATTGTTCTCCCTGGGAAAAACAGAATGGCATGCATTTTCCACAATACG,"Exon (Picalm-206/Picalm, exon 18 of 21)",7,90130213,90208932,78720,1,Picalm-205,64035,Picalm-205;Picalm-206;Picalm-215;Picalm-212;Picalm-213;Picalm-201;Picalm-202;Picalm-209;Picalm-214;Picalm-203;Picalm-210,Picalm;Picalm;Picalm;Picalm;Picalm;Picalm;Picalm;Picalm;Picalm;Picalm;Picalm,0;0;0;0;0;0;0;0;0;0;-935,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,4,233489,ENSMUSG00000039361,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6745,cg00919407,-0.00000783,0.00000737,-1.061747591,0.289176734,loss,ns,0.0000436,0.0000125,3.480825376,0.000571598,pos,ns,0.000549224,0.003669084,0.149689686,0.881106785,pos,ns,0.054971454,-0.0000711,0.00012618,-0.563217918,0.573693638,neg,ns,0.888893835,Lgi1,Lgi1_threeUTR,19,38283981,38284030,38283981,38283982,50,-,CGAACTCCTTTGATGTGATCAGTGATGATGCTTTTATTGGTCTTCCACAT,3' UTR,19,38264536,38312214,47679,1,Lgi1-207,19445,Gm50141-201;Lgi1-207;Lgi1-201;Lgi1-209;Lgi1-206;Lgi1-205;Lgi1-204;Lgi1-202,Gm50141;Lgi1;Lgi1;Lgi1;Lgi1;Lgi1;Lgi1;Lgi1,-3921;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,7,56839,ENSMUSG00000067242,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7140,cg21790694,0.0000486,0.0000218,2.229438942,0.026500907,gain,ns,-0.000128971,0.0000371,-3.479287979,0.000574762,neg,ns,0.092889431,0.010859719,8.553575631,5.57E-16,pos,yes,15.25376304,-0.00306174,0.000373465,-8.198200135,6.53E-15,neg,yes,0.672510638,Ubap1,Ubap1_Exon,4,41388756,41388805,41388804,41388805,50,+,CTATTACACAACAATGACCAGGACAATGCTTTGGAAGACCTCATGGCTCG,"Exon (Ubap1-202/Ubap1, exon 6 of 6)",4,41348996,41389766,40771,1,Ubap1-202,39760,Kif24-202;Kif24-201;Ubap1-202;Ubap1-201;Ubap1-203,Kif24;Kif24;Ubap1;Ubap1;Ubap1,76035;76043;0;0;17031,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,67123,ENSMUSG00000028437,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
18009,cg09408647,0.0000505,0.0000152,3.32354784,0.000995301,gain,ns,0.0000897,0.0000258,3.478400268,0.000576597,pos,ns,0.021256901,0.007558494,2.812319643,0.00523223,pos,ns,2.281313179,-0.000111028,0.000259936,-0.427136373,0.669576515,neg,ns,0.44765782,Arx,Arx_Intergenic_downstream,X,93302064,93302113,93302064,93302065,50,-,CGCTATGAATAATAGAGGAAGAATGGAGCGCTAATTCCCTCATCAAAGAA,Distal Intergenic,20,93286510,93298062,11553,1,Arx-202,15603,Arx-201;Arx-202;Pola1-201,Arx;Arx;Pola1,0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,32,11878,ENSMUSG00000035277,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14412,cg15845068,0.0000265,0.0000107,2.467391958,0.014150153,gain,ns,0.0000633,0.0000182,3.477127366,0.000579237,pos,ns,0.003954143,0.005337549,0.74081631,0.459365584,pos,ns,0.337841546,0.000251196,0.000183558,1.368486729,0.172150705,pos,ns,0.340404539,Obsl1,Obsl1_Exon,1,75480344,75480393,75480344,75480345,50,-,CGGCCCTCGTCTGCATCATGTGCTGTTTGTTTGGAGTCGTCTACTGCTTC,"Exon (Tmem198-202/Tmem198, exon 2 of 5)",1,75479310,75487233,7924,2,Obsl1-212,6840,Chpf-201;Chpf-202;Chpf-205;Chpf-204;Chpf-203;Obsl1-212;Tmem198-202;Tmem198-203;Tmem198-201;Tmem198-204,Chpf;Chpf;Chpf;Chpf;Chpf;Obsl1;Tmem198;Tmem198;Tmem198;Tmem198,-1073;-1037;-1598;-1225;-1230;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,98733,ENSMUSG00000026211,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
22234,cg02965730,0.00000331,0.00000104,3.174496596,0.001651749,gain,ns,-0.00000617,0.00000177,-3.476656452,0.000580217,neg,ns,0.00063255,0.000519667,1.217221211,0.22444586,pos,ns,0.648888402,-0.0000172,0.0000179,-0.961172979,0.337214298,neg,ns,0.971879582,Usp47,Usp47_threeUTR,7,112110421,112110470,112110421,112110422,50,+,CGCTAGTAAAACTAGCCTCAAACAGGATGCTCATAGCTTAATAATAAAAG,3' UTR,7,112023504,112111384,87881,1,Usp47-201,86917,Usp47-201;Usp47-206;Usp47-202,Usp47;Usp47;Usp47,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,4,74996,ENSMUSG00000059263,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7057,cg08636145,-0.000012,0.000011,-1.083021538,0.279640521,loss,ns,0.0000652,0.0000188,3.475517257,0.000582593,pos,ns,0.017777984,0.005496335,3.234516169,0.001349991,pos,ns,2.869669223,-0.000444712,0.000189018,-2.352744961,0.019260148,neg,ns,0.130556484,Tfap2a,Tfap2a_Intron,13,40726513,40726562,40726561,40726562,50,-,AAGTTTAAAACCCCACTGAGATATTAATGATTAAATAATTTTCACCATCG,"Intron (Tfap2a-201/Tfap2a, intron 2 of 6)",13,40715302,40730443,15142,2,Tfap2a-201,3881,Tfap2a-201;Tfap2a-202;Tfap2a-205;Tfap2a-203;Tfap2a-209;Tfap2a-208;Tfap2a-206;Tfap2a-204;Tfap2a-207,Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,57,21418,ENSMUSG00000021359,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
16751,cg10550033,0.000110868,0.0000191,5.791303709,1.71E-08,gain,yes,-0.000113008,0.0000325,-3.474710261,0.000584282,neg,ns,0.005950512,0.009528103,0.624522209,0.532744047,pos,ns,0.273481395,-0.000298651,0.000327671,-0.911437027,0.362773343,neg,ns,0.579014856,Gm4350,Gm4350_Intergenic_downstream,14,86396129,86396178,86396129,86396130,50,-,CGTCAATTCATCCCACGTGAGGGAGATTATGTGATTTACATGTTAAAGTG,Distal Intergenic,14,86320285,86320863,579,1,Gm4350-201,75893,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,100043306,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26526,cg22123411,-0.0000148,0.00000447,-3.317172214,0.001017489,loss,ns,0.0000264,0.00000759,3.474652484,0.000584403,pos,ns,0.001759654,0.002224767,0.790938487,0.42958458,pos,ns,0.366951316,-0.0000634,0.0000765,-0.829303422,0.407570841,neg,ns,0.8717118,Casz1,Casz1_Intron,4,148882338,148882387,148882338,148882339,50,-,CGGCACATGATTGCCGTCTTGATGAAATCCCCCCGGATGTAATGAGCTGA,"Intron (Casz1-201/Casz1, intron 2 of 15)",4,148804429,148945129,140701,1,Casz1-201,77909,Casz1-201;Casz1-202,Casz1;Casz1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,94,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23190,cg12459762,0.0000517,0.00000647,7.988912755,2.70E-14,gain,yes,-0.0000382,0.000011,-3.47428092,0.000585182,neg,ns,-0.002185515,0.003219588,-0.678818394,0.497759393,neg,ns,0.302980536,0.000102862,0.000110721,0.92901838,0.353602375,pos,ns,0.818159864,Rnf220,Rnf220_Intron,4,117411877,117411926,117411925,117411926,50,+,ATTATTTACGGTACAAGACATTAAATAAATAATGCAAACTCAGGCAAGCG,"Intron (Rnf220-201/Rnf220, intron 2 of 14)",4,117271463,117497052,225590,2,Rnf220-201,85126,Rnf220-201;Rnf220-207,Rnf220;Rnf220,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18295,cg20463846,0.00004,0.0000177,2.259182156,0.024566373,gain,ns,0.000104411,0.0000301,3.474193031,0.000585367,pos,ns,0.02986155,0.008804622,3.391576468,0.000784999,pos,ns,3.105130997,-0.000370747,0.00030279,-1.224436635,0.221717228,neg,ns,0.523615324,Gm48316,Gm48316_Intron,13,94702293,94702342,94702341,94702342,50,+,ATTCACCCGTTTAAGCCATAATTGCAGAAACTATCAAATAATTACGGTCG,"Intron (Gm32351-201/Gm32351-201, intron 1 of 2)",13,94752270,94752593,324,1,Gm48316-201,-49928,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,42,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20808,cg03490417,0.00000425,0.00000216,1.965195238,0.050284258,gain,ns,-0.0000128,0.00000368,-3.47415102,0.000585455,neg,ns,-0.002045448,0.001076699,-1.899738832,0.058395284,neg,ns,1.233622228,0.0000305,0.000037,0.82472368,0.410162618,pos,ns,0.937253774,Cnga4,Cnga4_Exon,7,105407897,105407946,105407945,105407946,50,+,TGATCTACAGACCAAGTTTGCTCGCCTCCTGGCTGAGCTGGAGTCCAGCG,"Exon (Cnga4-201/Cnga4, exon 6 of 6)",7,105404568,105408742,4175,1,Cnga4-201,3329,Cnga4-201;Cnga4-202;Gm4972-201,Cnga4;Cnga4;Gm4972,0;0;6027,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,233649,ENSMUSG00000030897,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11360,cg26703991,-0.000091,0.00000834,-10.91992045,1.05E-23,loss,yes,-0.0000492,0.0000142,-3.474021859,0.000585726,neg,ns,0.019876943,0.004149289,4.790445141,0.00000258,pos,ns,5.587748033,-0.00121574,0.000142694,-8.519929796,7.06E-16,neg,yes,0.906713297,Clk3,Clk3_Exon,9,57758846,57758895,57758894,57758895,50,-,TTGGATTTTCCAGATCCCAGCATTTCATAAGGCACACAGCATATATAACG,"Exon (Clk3-207/Clk3, exon 3 of 12)",9,57750624,57765103,14480,2,Clk3-207,6208,Clk3-207;Clk3-201;Clk3-205;Clk3-203;Clk3-206;Clk3-209;Clk3-208;Clk3-204,Clk3;Clk3;Clk3;Clk3;Clk3;Clk3;Clk3;Clk3,0;0;0;0;-3525;0;5413;5958,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,14,102414,ENSMUSG00000032316,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
9832,cg21140729,0.0000488,0.0000122,4.006794697,0.0000771,gain,ns,0.0000718,0.0000207,3.473488381,0.000586848,pos,ns,0.026722342,0.006059303,4.410134798,0.0000143,pos,ns,4.845713594,-0.000498831,0.000208379,-2.39386541,0.017266006,neg,ns,0.38914582,Rap2c,Rap2c_Exon,X,51017777,51017826,51017777,51017778,50,-,CGGTAGAAATCTTCAATGGTGGGGTCATATTTCTCAATGAAAGTCCCAGT,Promoter (<=1kb),20,51003912,51018018,14107,2,Rap2c-201,192,Rap2c-201,Rap2c,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,6,72065,ENSMUSG00000050029,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
18641,cg06186330,0.0000178,0.00000754,2.36062497,0.018863035,gain,ns,0.0000444,0.0000128,3.472036217,0.000589911,pos,ns,0.004131796,0.003750378,1.101701256,0.271446201,pos,ns,0.566316231,0.0000951,0.000128975,0.737109776,0.461613101,pos,ns,0.879397686,Skap1,Skap1_Intergenic_upstream,11,96448078,96448127,96448078,96448079,50,-,CGGAACTCAATCAACAGCGGGCCGCAAGGTTCAAGGCTGCAATTCATCCC,Distal Intergenic,11,96464593,96759130,294538,1,Skap1-203,-16515,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,46,78473,ENSMUSG00000057058,conserved gene and region,11,96447944,96448131,188,*,188,16,0.54787234,1.147215866,0.085106383,2.15E-11,CpGisland,TRUE,U11,Tr-P
2951,cg01967702,0.0000119,0.00000457,2.603436545,0.009673454,gain,ns,0.000027,0.00000776,3.471017781,0.000592068,pos,ns,0.005536207,0.002274787,2.433725703,0.015508989,pos,ns,1.809416517,-0.0000703,0.0000782,-0.898467608,0.369633612,neg,ns,0.89734495,Lrmda,Lrmda_Intron,14,22152542,22152591,22152590,22152591,50,-,TCAGTGGGAGCTGTCAATGTGTCAAGCTGTCAGCCTGCTGCGAGGGGACG,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,132830,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206,Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20777,cg04574222,-0.0000351,0.00000897,-3.915186924,0.000111118,loss,ns,0.0000529,0.0000152,3.470880478,0.000592359,pos,ns,-0.004906714,0.004462307,-1.099591348,0.272363398,neg,ns,0.564851257,0.0000578,0.000153458,0.376589167,0.706736566,pos,ns,0.890071639,Wt1,Wt1_Exon,2,105172289,105172338,105172337,105172338,50,-,TCCGCCATCACAACATGCATCAGAGAAACATGACCAAACTCCAGCTGGCG,"Exon (Wt1-205/Wt1, exon 10 of 10)",2,105126529,105173612,47084,1,Wt1-205,45760,Wt1-205;Wt1-207;Wt1-203;Wt1-204;Wt1-201;Wt1-202;Wt1-208,Wt1;Wt1;Wt1;Wt1;Wt1;Wt1;Wt1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,Exon,6,6,22431,ENSMUSG00000016458,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17358,cg23930466,0.0000465,0.0000204,2.286015804,0.022927773,gain,ns,0.000119997,0.0000346,3.470874535,0.000592372,pos,ns,0.029392247,0.01012855,2.901920465,0.003974493,pos,ns,2.400718303,-0.00038798,0.00034832,-1.113860517,0.266201903,neg,ns,0.634349327,Me3,Me3_Exon,7,89848621,89848670,89848621,89848622,50,+,CGCAGGAGCCTTCACGGAGCAGATTCTGAGGGACATGGCCTCCTTCCACG,"Exon (Me3-202/Me3, exon 11 of 14)",7,89632703,89854359,221657,1,Me3-202,215918,Me3-202;Me3-203;Me3-201,Me3;Me3;Me3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,109264,ENSMUSG00000030621,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16683,cg00861892,-0.0000209,0.0000181,-1.150469026,0.250837418,loss,ns,0.000106967,0.0000308,3.470707581,0.000592726,pos,ns,-0.000764822,0.009029233,-0.084705045,0.932550561,neg,ns,0.030327612,0.000131183,0.000310515,0.422468991,0.6729756,pos,ns,0.766768539,Samt3,Samt3_Intergenic_downstream,X,86076259,86076308,86076259,86076260,50,-,CGATGTTACTCATTTTAATTACTGGTATTTGGAAATTAAATGGCCTAGGG,Distal Intergenic,20,86044199,86047313,3115,1,Samt3-201,32109,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,73495,ENSMUSG00000035454,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14142,cg15940363,0.0000174,0.0000201,0.863932008,0.388293199,gain,ns,0.000118617,0.0000342,3.467906855,0.000598703,pos,ns,0.019053645,0.01002064,1.901439806,0.058171453,pos,ns,1.235290086,-0.000290015,0.000344609,-0.841576174,0.400673956,neg,ns,0.69586318,Hoxd10,Hoxd10_threeUTR,2,74694630,74694679,74694630,74694631,50,+,CGTAATGCAGGGTAACTATTATTGCGCATTTTCATTTGGGTCTTAACTTA,3' UTR,2,74691924,74695105,3182,1,Hoxd10-201,2706,Hoxd10-201;Hoxd9-201,Hoxd10;Hoxd9,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,24,15430,ENSMUSG00000050368,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
13843,cg23167070,0.00000786,0.00000284,2.768693732,0.005966998,gain,ns,0.0000167,0.00000482,3.46736659,0.000599862,pos,ns,0.002602063,0.001412631,1.841997844,0.066430479,pos,ns,1.177632614,-0.0000659,0.0000486,-1.356100581,0.1760541,neg,ns,0.942054325,Fryl,Fryl_Exon,5,73090600,73090649,73090648,73090649,50,-,CCTGGAACATTCTGAATAATATTCGCCACTAAGGCACTAAAATGGCATCG,"Exon (Fryl-202/Fryl, exon 28 of 63)",5,73020322,73256619,236298,2,Fryl-202,165970,Fryl-202;Fryl-201;Fryl-217,Fryl;Fryl;Fryl,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,7,72313,ENSMUSG00000070733,conserved gene and region,5,73090588,73090767,180,*,180,12,0.505555556,1.044487428,0.066666667,0.000000189,CpGisland,TRUE,U10,Tr-S
17826,cg22907348,0.0000138,0.00000828,1.661586962,0.097606508,gain,ns,0.0000487,0.0000141,3.467169958,0.000600285,pos,ns,0.008975595,0.004119165,2.178984202,0.03008559,pos,ns,1.521641462,-0.000120035,0.000141658,-0.847357691,0.397449494,neg,ns,0.199148076,Chrm4,Chrm4_Exon,2,91928119,91928168,91928167,91928168,50,-,ACTTCCAATGAGTCCAGCTCAGGCAGTGCCACCCAGAACACCAAGGAACG,Promoter (<=1kb),2,91927249,91928688,1440,1,Chrm4-201,870,Chrm4-201;Dgkz-206;Dgkz-202;Dgkz-201;Dgkz-214;Dgkz-203;Dgkz-212;Mdk-204;Mdk-202;Mdk-201;Mdk-203,Chrm4;Dgkz;Dgkz;Dgkz;Dgkz;Dgkz;Dgkz;Mdk;Mdk;Mdk;Mdk,0;37419;47696;35489;37432;22259;37432;3520;3612;4129;3531,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,12672,ENSMUSG00000040495,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11969,cg11235379,0.00011216,0.00000788,14.23127039,1.02E-35,gain,yes,-0.0000464,0.0000134,-3.467038149,0.000600568,neg,ns,0.000924013,0.003922563,0.235563495,0.813926945,pos,ns,0.089414574,0.000292554,0.000134897,2.168730783,0.030863197,pos,ns,0.228579117,Tbr1,Tbr1_Exon,2,61806063,61806112,61806111,61806112,50,+,CCAATCACTGGAGGTTTCAAGGAGGCAAATGGGTTCCTTGCGGCAAAGCG,"Exon (Tbr1-201/Tbr1, exon 2 of 6)",2,61804453,61814114,9662,1,Tbr1-201,1610,Tbr1-204;Tbr1-201;Tbr1-202;Tbr1-203,Tbr1;Tbr1;Tbr1;Tbr1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,24,27,21375,ENSMUSG00000035033,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
9141,cg10886038,-0.000039,0.0000113,-3.441305023,0.000658347,loss,ns,0.0000667,0.0000192,3.466238633,0.00060229,pos,ns,-0.001781904,0.005633985,-0.316277673,0.75200461,neg,ns,0.123779497,-0.0000438,0.000193752,-0.226033986,0.821323942,neg,ns,0.771130485,Gm13469,Gm13469_Intergenic_upstream,2,47085058,47085107,47085058,47085059,50,-,CGTGTGAGACTGTTTAATTACCTCCAGCTAATTAGATTCTTGACCAAATT,Distal Intergenic,2,46406220,46406569,350,2,Gm13469-201,-678538,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,20,27,383690,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22142,cg14497492,-0.000018,0.00000449,-4.004051917,0.000078,loss,ns,0.0000265,0.00000763,3.466035462,0.000602728,pos,ns,0.005843474,0.002235949,2.613420134,0.009401369,pos,ns,2.0268089,-0.000281952,0.0000769,-3.666757884,0.000288969,neg,ns,0.065151755,Mn1,Mn1_Promoter,5,111415935,111415984,111415935,111415936,50,+,CGTTTATTTCATTTCAGATTTCATGCGTAATTTAGCAAACGCTAGACAGA,Promoter (1-2kb),5,111417362,111418073,712,1,Mn1-202,-1378,Mn1-202;Mn1-201,Mn1;Mn1,-1378;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,5,12,433938,ENSMUSG00000070576,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
17790,cg09984378,0.00000934,0.00000824,1.133727728,0.257784759,gain,ns,-0.0000485,0.000014,-3.465933086,0.000602949,neg,ns,0.035495697,0.004100142,8.657187908,2.69E-16,pos,yes,15.57041284,-0.000882973,0.000141004,-6.262064164,1.27E-09,neg,yes,0.841110972,Son,Son_threeUTR,16,91665678,91665727,91665726,91665727,50,-,ATCTTTTAATAAACAGTTTACTTTTATTTAACTTGTTGTGCAAAATCACG,3' UTR,16,91647506,91679207,31702,1,Son-203,18172,Son-203;Son-204;Son-202;Son-208;Son-201;Son-205;Son-212;Son-207,Son;Son;Son;Son;Son;Son;Son;Son,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,14,31,20658,ENSMUSG00000022961,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16860,cg09162738,0.000132375,0.0000156,8.491685695,8.60E-16,gain,yes,-0.0000918,0.0000265,-3.465268354,0.000604385,neg,ns,-0.010688527,0.007758716,-1.377615538,0.169315742,neg,ns,0.771302663,0.000111639,0.000266822,0.418402225,0.675942764,pos,ns,0.332708068,Gm10095,Gm10095_Intergenic_downstream,12,86824353,86824402,86824353,86824354,50,-,CGCAGGAACTTGCATTAGGATGAATGAGCAGAAACTCCTGTCTTTGTCAA,Distal Intergenic,12,86845778,86846467,690,2,Gm10095-201,22114,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,100042650,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
10388,cg15328344,-0.00000648,0.00000205,-3.160626674,0.001729832,loss,ns,0.0000121,0.00000348,3.464756122,0.000605494,pos,ns,0.004628987,0.001019973,4.538343018,0.00000812,pos,ns,5.090407627,-0.0000817,0.0000351,-2.328181783,0.020545503,neg,ns,0.071663029,Mxi1,Mxi1_Intron,19,53313865,53313914,53313865,53313866,50,-,CGCGGGGCTTGTTTTGCTCCAGAGCTCTGCTTTCCGAAACGCTTACATCA,"Intron (Mxi1-201/Mxi1, intron 1 of 5)",19,53310518,53373293,62776,1,Mxi1-201,3347,Mxi1-201;Mxi1-208,Mxi1;Mxi1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,10,17859,ENSMUSG00000025025,conserved gene and region,19,53312964,53313905,942,*,942,96,0.671974522,0.92014652,0.101910828,1.22E-73,CpGisland,TRUE,U1,Pr-A
20070,cg26664612,-0.0000448,0.00000838,-5.354013097,0.000000168,loss,yes,-0.0000493,0.0000142,-3.462137253,0.000611193,neg,ns,0.011427343,0.004169207,2.740891009,0.006482769,pos,ns,2.18823948,-0.000773916,0.000143379,-5.397703585,0.000000134,neg,yes,0.702136243,Sp1,Sp1_Exon,15,102408256,102408305,102408304,102408305,50,+,GCAGCAGAATTGAGTCACCCAATGAGAACAGCAACAACTCCCAGGGCCCG,"Exon (Sp1-201/Sp1, exon 3 of 6)",15,102406333,102432679,26347,1,Sp1-202,1923,Sp1-206;Sp1-202;Sp1-201;Sp1-203;Sp1-205;Sp1-204,Sp1;Sp1;Sp1;Sp1;Sp1;Sp1,0;0;0;0;987;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,4,20683,ENSMUSG00000001280,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11106,cg09773079,0.00000666,0.000021,0.317106668,0.751376122,gain,ns,0.000123546,0.0000357,3.461977741,0.000611542,pos,ns,0.044158922,0.010454976,4.223722946,0.0000316,pos,ns,4.499970756,-0.00080814,0.000359546,-2.247668013,0.025300175,neg,ns,0.628184348,Lingo1,Lingo1_Exon,9,56619856,56619905,56619904,56619905,50,+,ACCTGGGCGTAGCGCACCTCCAGCGTGCCATCAGGGAAGACTGTGAGCCG,"Exon (Lingo1-201/Lingo1, exon 4 of 4)",9,56618475,56685253,66779,2,Lingo1-201,65348,Lingo1-201;Lingo1-206;Lingo1-203;Lingo1-202,Lingo1;Lingo1;Lingo1;Lingo1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,25,235402,ENSMUSG00000049556,conserved gene and region,9,56619454,56620252,799,*,799,46,0.600750939,0.647544883,0.057571965,3.48E-24,CpGisland,TRUE,NA,NRS
24140,cg19709702,0.000109931,0.0000139,7.893394708,5.12E-14,gain,yes,-0.0000819,0.0000237,-3.461517141,0.00061255,neg,ns,0.030020888,0.006931623,4.331004116,0.0000201,pos,ns,4.697488178,-0.001323002,0.000238378,-5.550019553,6.14E-08,neg,yes,0.605972307,Usp53,Usp53_fiveUTR,3,122962942,122962991,122962990,122962991,50,-,CTTTCTGCAAGAGCATGCCTTATGTTATCTGAGGGAAGTGCTTTTTCTCG,5' UTR,3,122931493,122984510,53018,2,Usp53-201,21519,Usp53-201;Usp53-207;Usp53-205;Usp53-202;Usp53-209;Usp53-204;Usp53-208;Usp53-203;Usp53-210,Usp53;Usp53;Usp53;Usp53;Usp53;Usp53;Usp53;Usp53;Usp53,0;0;0;0;0;-1493;0;0;20902,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,1,99526,ENSMUSG00000039701,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21844,cg19243613,-0.0000176,0.00000695,-2.533867727,0.011773401,loss,ns,0.0000409,0.0000118,3.460875723,0.000613956,pos,ns,0.006727711,0.003460061,1.944390625,0.052752667,pos,ns,1.27775558,-0.000127111,0.000118991,-1.068241983,0.286242509,neg,ns,0.906738303,Gm1943,Gm1943_Intron,8,109249539,109249588,109249587,109249588,50,-,CTTAATGTTTCAAAGCTCATTAGCCAAACGATTATTCCTCATTAACAGCG,"Intron (D030068K23Rik-202/D030068K23Rik-202, intron 8 of 9)",8,109340691,109340864,174,2,Gm1943-201,91325,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,28,384864,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3562,cg25607727,-0.00000585,0.00000248,-2.354703394,0.019160773,loss,ns,-0.0000146,0.00000422,-3.458131366,0.000620008,neg,ns,-0.001279618,0.001236073,-1.035228544,0.301369067,neg,ns,0.520901327,-0.00000709,0.0000425,-0.166907673,0.867551513,neg,ns,0.945114064,Rprd1a,Rprd1a_Exon,18,24506850,24506899,24506898,24506899,50,+,TTCTCTGCAAGGGCTTCCTTTTGACAACGAAGAAAATCTGCTAACATTCG,"Exon (Rprd1a-201/Rprd1a, exon 6 of 7)",18,24484960,24530204,45245,2,Rprd1a-201,23305,Rprd1a-201;Rprd1a-203;Rprd1a-202,Rprd1a;Rprd1a;Rprd1a,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,225283,ENSMUSG00000040446,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17531,cg25823571,-0.0000127,0.0000107,-1.188267601,0.235637538,loss,ns,-0.0000626,0.0000181,-3.457981815,0.000620339,neg,ns,-0.01676176,0.005306435,-3.158761239,0.001740591,neg,ns,2.759303375,0.0000658,0.000182488,0.360302269,0.718866466,pos,ns,0.825997141,Gm19935,Gm19935_Intron,8,90717273,90717322,90717321,90717322,50,+,CTTCTATTTAAGTTGCTTGACAACCAGACTACCCAACCACAAAGAGATCG,"Intron (Gm35850-201/Gm35850-201, intron 3 of 5)",8,90816145,90817393,1249,2,Gm19935-201,100071,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,3,100503868,ENSMUSG00000110332,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22595,cg00267853,0.0000473,0.0000123,3.857728374,0.000139229,gain,ns,-0.000072,0.0000208,-3.456697408,0.000623192,neg,ns,-0.011794755,0.006098201,-1.934136632,0.054006236,neg,ns,1.26755609,0.000272311,0.000209717,1.298469017,0.195091324,pos,ns,0.71970902,BC052040,BC052040_Intergenic_upstream,2,115322585,115322634,115322633,115322634,50,+,GGCATCTAATCCTATTCTTGGAACATTTAAACTGTTTAAATGCACTGACG,Distal Intergenic,2,115581716,115778768,197053,1,BC052040-203,-259082,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,9,49,399568,ENSMUSG00000040282,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2025,cg16540180,-0.0000269,0.0000131,-2.044918163,0.04170711,loss,ns,0.0000771,0.0000223,3.455199423,0.000626534,pos,ns,0.003760607,0.006539757,0.575037663,0.565682932,pos,ns,0.247426925,0.000199087,0.000224902,0.885216192,0.376726143,pos,ns,0.887108816,Gm48312,Gm48312_Intergenic_downstream,14,17347275,17347324,17347323,17347324,50,-,TGTCATTTCAGTCCTGCAGTTAGCTATAAAGCAAATCTTTTCTTTTTCCG,Distal Intergenic,14,17121503,17122100,598,1,Gm48312-201,225821,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,5,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17792,cg04787747,0.000160413,0.0000136,11.7716575,1.08E-26,gain,yes,-0.00008,0.0000232,-3.455063342,0.000626839,neg,ns,0.041693774,0.00678232,6.147420701,2.42E-09,pos,ns,8.616117204,-0.000392765,0.000233243,-1.683928028,0.093202167,neg,ns,0.803662561,Donson,Donson_threeUTR,16,91678171,91678220,91678171,91678172,50,+,CGCTTACCAGCCCAGCTTTGCCAGCCCTAATAAGAAGCATGCTAAAGCCA,3' UTR,16,91676808,91681310,4503,2,Donson-212,3090,Donson-212;Donson-205;Donson-202;Donson-203;Donson-204;Donson-208;Donson-201;Donson-206;Donson-210;Donson-209;Donson-207;Donson-211;Donson-213;Son-203;Son-202;Son-208;Son-205;Son-212;Son-214;Son-211;Son-209;Son-210;Son-213,Donson;Donson;Donson;Donson;Donson;Donson;Donson;Donson;Donson;Donson;Donson;Donson;Donson;Son;Son;Son;Son;Son;Son;Son;Son;Son;Son,0;0;10545;10545;10545;10545;10550;9655;9655;10497;10483;3170;4400;0;0;0;0;0;0;4730;4500;0;3239,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,1,60364,ENSMUSG00000022960,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3763,cg06524778,0.0000149,0.00000623,2.390524512,0.017420947,gain,ns,-0.0000366,0.0000106,-3.451475212,0.000634917,neg,ns,-0.001558241,0.00310281,-0.502203264,0.615881073,neg,ns,0.210503143,-0.000164654,0.000106705,-1.543071819,0.123833519,neg,ns,0.767598237,Cic,Cic_Exon,7,25292274,25292323,25292274,25292275,50,-,CGGCCCCCGCCCCTGAAGAAGACCTTTGACTCTGTGGACAAGTGAGCATG,"Exon (Cic-212/Cic, exon 17 of 21)",7,25267704,25294159,26456,1,Cic-212,24570,Cic-212;Cic-202;Cic-201;Cic-207;Cic-210;Cic-208;Cic-206;Cic-215;Cic-209;Cic-204;Pafah1b3-203;Pafah1b3-202;Pafah1b3-201;Pafah1b3-204;Pafah1b3-207;Pafah1b3-205;Pafah1b3-206,Cic;Cic;Cic;Cic;Cic;Cic;Cic;Cic;Cic;Cic;Pafah1b3;Pafah1b3;Pafah1b3;Pafah1b3;Pafah1b3;Pafah1b3;Pafah1b3,0;0;0;9464;0;3011;0;1066;0;-697;4379;4989;5663;5559;5614;5598;5611,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,Exon,2,3,71722,ENSMUSG00000005442,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5381,cg12154271,0.00000218,0.00000412,0.527747784,0.598051931,gain,ns,-0.0000242,0.000007,-3.451405936,0.000635074,neg,ns,0.008869106,0.002052193,4.321769898,0.0000209,pos,ns,4.680330893,-0.000322516,0.0000706,-4.569843986,0.00000706,neg,ns,0.854533252,Hnrnpm,Hnrnpm_Exon,17,33670068,33670117,33670116,33670117,50,+,CTCAGACACTTACCCTTGACTTTCCTTCAGCGTCCATTAAGAGCTCCACG,"Exon (Hnrnpm-206/Hnrnpm, exon 3 of 16)",17,33646233,33686860,40628,2,Hnrnpm-206,16743,Hnrnpm-206;Hnrnpm-202;Hnrnpm-205;Hnrnpm-201;Hnrnpm-207;Hnrnpm-212;Hnrnpm-215;Hnrnpm-208;Hnrnpm-209;Hnrnpm-203,Hnrnpm;Hnrnpm;Hnrnpm;Hnrnpm;Hnrnpm;Hnrnpm;Hnrnpm;Hnrnpm;Hnrnpm;Hnrnpm,0;0;0;0;0;0;0;0;0;15286,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,7,76936,ENSMUSG00000059208,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12086,cg08887457,0.000290969,0.0000144,20.16081341,2.42E-58,gain,yes,0.0000846,0.0000245,3.450392654,0.000637374,pos,ns,0.025547337,0.007183163,3.556558006,0.000434436,pos,ns,3.362073706,0.000459553,0.000247028,1.860326267,0.063786216,pos,ns,0.305498148,Nrp2,Nrp2_Exon,1,62795731,62795780,62795731,62795732,50,-,CGAGCCCACAGTGGACACGGTGCCCATGCAGCCCATCCCAGCCTACTGGT,"Exon (Nrp2-201/Nrp2, exon 16 of 16)",1,62703285,62818695,115411,1,Nrp2-203,92446,Nrp2-203;Nrp2-204;Nrp2-201;Nrp2-205;Nrp2-202;Nrp2-206,Nrp2;Nrp2;Nrp2;Nrp2;Nrp2;Nrp2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,6,18187,ENSMUSG00000025969,conserved gene and region,1,62795721,62796077,357,*,357,25,0.613445378,0.766225962,0.070028011,1.81E-15,CpGisland,TRUE,NA,NRS
17599,cg18889401,0.00000378,0.00000412,0.917601326,0.35954096,gain,ns,0.0000241,0.00000699,3.449545413,0.000639302,pos,ns,0.002414681,0.002048847,1.178555831,0.239478926,pos,ns,0.620732698,0.0000568,0.0000705,0.805833706,0.420956438,pos,ns,0.969584117,Aktip,Aktip_Exon,8,91171174,91171223,91171222,91171223,50,-,AGCAAATCATCTGCGTATTATTGCGATTTGATTGACACTGACAAGTGTCG,"Exon (Gm45666-201/Gm45666-201, exon 2 of 2)",8,91125916,91199976,74061,2,Aktip-209,28753,Aktip-209;Aktip-207,Aktip;Aktip,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,6,14339,ENSMUSG00000031667,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20374,cg15229894,0.0000986,0.0000076,12.98349003,4.46E-31,gain,yes,-0.0000445,0.0000129,-3.448480858,0.000641733,neg,ns,-0.000102546,0.003781347,-0.027118934,0.978382322,neg,ns,0.009491403,0.000117265,0.00013004,0.901761033,0.367883901,pos,ns,0.101703288,Hoxc5,Hoxc5_Exon,15,103014346,103014395,103014394,103014395,50,+,GACGAAGCGGCTCCTCTGAACCCCGGGATGTACAGTCAGAAGGCGGCTCG,"Exon (Hoxc5-201/Hoxc5, exon 1 of 2)",15,102967443,103015676,48234,1,Hoxc5-202,46903,Hoxc4-202;Hoxc5-202;Hoxc5-201;Hoxc6-202;Hoxc6-203;Hoxc6-201,Hoxc4;Hoxc5;Hoxc5;Hoxc6;Hoxc6;Hoxc6,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,72,134,15424,ENSMUSG00000022485,mapped to different genes,15,103014167,103014734,568,*,568,41,0.588028169,0.835773758,0.072183099,1.73E-25,CpGisland,TRUE,U13,Hc-P
3037,cg22250202,-0.00000379,0.0000018,-2.101526928,0.036401571,loss,ns,0.0000106,0.00000307,3.447567092,0.000643827,pos,ns,0.0021826,0.000897996,2.430523422,0.015644063,pos,ns,1.805650454,-0.000052,0.0000309,-1.682449106,0.093488683,neg,ns,0.963096237,Lrmda,Lrmda_Intron,14,22457769,22457818,22457817,22457818,50,+,AGTGAACTTTAATGGGATTTGACAACATCATATTAAGCACAACAACTACG,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,438057,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206;Lrmda-202,Lrmda;Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24722,cg03774447,0.00014852,0.0000108,13.74345265,6.85E-34,gain,yes,-0.0000633,0.0000184,-3.447427528,0.000644147,neg,ns,0.039892705,0.00537854,7.417013884,1.16E-12,pos,yes,11.93724848,-0.000284748,0.000184968,-1.539447343,0.124715207,neg,ns,0.802600796,Bckdk,Bckdk_Exon,7,127907454,127907503,127907502,127907503,50,-,GAGTCACCTAGACACTCCCTACAATGTCCCAGATGTGGTCATCACCATCG,"Exon (Bckdk-201/Bckdk, exon 10 of 12)",7,127904082,127910221,6140,1,Bckdk-201,3372,Bckdk-201;Bckdk-203;Bckdk-204;Bckdk-202;Bckdk-207;Bckdk-206;Bckdk-205,Bckdk;Bckdk;Bckdk;Bckdk;Bckdk;Bckdk;Bckdk,0;3351;2814;0;0;2537;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,12041,ENSMUSG00000030802,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5078,cg13828988,-0.00000671,0.00000362,-1.855275531,0.064506022,loss,ns,-0.0000212,0.00000615,-3.446788404,0.000645616,neg,ns,-0.007800719,0.001801147,-4.330973223,0.0000201,neg,ns,4.697430731,0.000141171,0.0000619,2.279110768,0.023340046,pos,ns,0.863720463,Prrc2b,Prrc2b_Exon,2,32185383,32185432,32185383,32185384,50,-,CGCAGCCGGGTTTGCAGAAATCTGTCTCCAATTTGCAGAAACCGACACAG,"Exon (Prrc2b-201/Prrc2b, exon 4 of 30)",2,32151082,32234537,83456,1,Prrc2b-201,34301,Prrc2b-201;Prrc2b-202;Prrc2b-206,Prrc2b;Prrc2b;Prrc2b,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,6,227723,ENSMUSG00000039262,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9890,cg24996622,0.0000132,0.00000964,1.366122077,0.172890837,gain,ns,-0.0000565,0.0000164,-3.445653208,0.000648233,neg,ns,0.001197498,0.004799661,0.249496413,0.803142052,pos,ns,0.095207634,-0.000342045,0.00016506,-2.072248303,0.039068711,neg,ns,0.551575869,Gm46574,Gm46574_Intergenic_downstream,17,51398675,51398724,51398723,51398724,50,+,TGAAAGTCCTTAATTGGCCTTAATGAAATGCACTTAAAGGGCAATAAACG,Distal Intergenic,17,51484292,51484721,430,2,Gm46574-201,85997,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,19,108168316,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12140,cg19102839,0.00000143,0.00000356,0.402301219,0.687739609,gain,ns,-0.0000208,0.00000604,-3.445183531,0.000649318,neg,ns,-0.005689217,0.001770262,-3.213771799,0.001447973,neg,ns,2.8392394,0.0000427,0.0000609,0.701413313,0.483571323,pos,ns,0.897093116,Ino80d,Ino80d_fiveUTR,1,63093409,63093458,63093409,63093410,50,+,CGTTGAGTCGCCTCTGCTTGCACAGTTTGGGGCTATATGAGCACAAGGGC,5' UTR,1,63047801,63114267,66467,2,Ino80d-205,20809,Ino80d-202;Ino80d-205;Ino80d-206;Ino80d-201;Ino80d-203;Ino80d-204,Ino80d;Ino80d;Ino80d;Ino80d;Ino80d;Ino80d,0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,9,12,227195,ENSMUSG00000040865,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18037,cg26848592,-0.00000283,0.00000209,-1.352834143,0.177094458,loss,ns,0.0000122,0.00000355,3.444945884,0.000649868,pos,ns,0.001954005,0.001041332,1.87644778,0.061533123,pos,ns,1.210891041,-0.0000311,0.0000358,-0.868675113,0.385696872,neg,ns,0.966420693,Pola1,Pola1_Intron,X,93377770,93377819,93377770,93377771,50,+,CGCTGGGTCAATATAGCTGCTTGTCAATTCAGAAATGCAAAGTGCTGTGT,"Intron (Pola1-201/Pola1, intron 35 of 36)",20,93304767,93632155,327389,2,Pola1-201,254336,Pola1-201,Pola1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,59,62,18968,ENSMUSG00000006678,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19761,cg18465043,0.0000499,0.0000341,1.463532969,0.144334808,gain,ns,0.000199401,0.0000579,3.44454532,0.000650796,pos,ns,0.011798973,0.016959481,0.695715422,0.487128285,pos,ns,0.312356652,0.000290769,0.000583235,0.498544582,0.618453794,pos,ns,0.640183532,Ppp4r3a,Ppp4r3a_Exon,12,101040722,101040771,101040770,101040771,50,+,CATCCTCATCATCATCTTCATCATCATCAGGATAATCTACCAGACCCACG,"Exon (Ppp4r3a-201/Ppp4r3a, exon 15 of 15)",12,101039409,101083663,44255,2,Ppp4r3a-201,42892,Ppp4r3a-201;Ppp4r3a-205;Ppp4r3a-202;Ppp4r3a-208;Ppp4r3a-206,Ppp4r3a;Ppp4r3a;Ppp4r3a;Ppp4r3a;Ppp4r3a,0;0;0;2774;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,10,68734,ENSMUSG00000041846,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8338,cg09939588,0.0000182,0.0000136,1.340212922,0.181157571,gain,ns,-0.0000793,0.000023,-3.444282269,0.000651406,neg,ns,-0.003828329,0.006746716,-0.567435937,0.570828727,neg,ns,0.243494179,0.000398897,0.000232019,1.719240966,0.086568716,pos,ns,0.557779727,Zeb2,Zeb2_Intron,2,45024745,45024794,45024745,45024746,50,+,CGGGGGAAACAAAACCTTTTCAAGAGGTGTGACCACAAGGGCTTAGGCAA,"Intron (Zeb2-212/Zeb2, intron 3 of 10)",2,44983632,45117395,133764,2,Zeb2-212,92601,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-227;Zeb2-216;Zeb2-229;Zeb2-218;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14897,cg25954699,0.0000134,0.0000165,0.813726447,0.416426254,gain,ns,0.0000964,0.000028,3.443385723,0.000653489,pos,ns,0.002170296,0.008199169,0.264697068,0.791418741,pos,ns,0.10159367,-0.000087,0.000281969,-0.308556025,0.757866522,neg,ns,0.667989118,Cacng2,Cacng2_fiveUTR,15,78118870,78118919,78118918,78118919,50,+,CACCTCGATCAAACAGCCCCATAATTCTTCATTATATAAACACCCAACCG,5' UTR,15,77991748,78120028,128281,2,Cacng2-201,1109,Cacng2-201,Cacng2,0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,6,12300,ENSMUSG00000019146,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
8332,cg09571004,-0.0000193,0.0000167,-1.155989891,0.248575417,loss,ns,-0.0000974,0.0000283,-3.443118712,0.00065411,neg,ns,-0.020282958,0.008288969,-2.446982058,0.014960738,neg,ns,1.825046975,0.000395372,0.000285057,1.38699421,0.166439972,pos,ns,0.309120182,Zeb2,Zeb2_Intron,2,45024596,45024645,45024596,45024597,50,-,CGTGCATATCTGCTCATAATATGATCTTTGTATAATCCGCGGGTCTGCAC,"Intron (Zeb2-212/Zeb2, intron 3 of 10)",2,44983632,45117395,133764,2,Zeb2-212,92750,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-227;Zeb2-216;Zeb2-229;Zeb2-218;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9396,cg13097175,0.0000264,0.0000175,1.502762775,0.133918208,gain,ns,0.000102602,0.0000298,3.442814235,0.00065482,pos,ns,0.011155519,0.008730953,1.277697722,0.20231201,pos,ns,0.693978335,0.0000563,0.000300257,0.187353466,0.851506069,pos,ns,0.578694782,Slc25a14,Slc25a14_fiveUTR,X,48624155,48624204,48624203,48624204,50,-,CCTAATTTTTCTAAGGGTGAAGTTTGCAACGGCGGCCGTGATTGTAAGCG,Promoter (<=1kb),20,48623413,48631036,7624,1,Slc25a14-203,742,Slc25a14-203;Slc25a14-201;Slc25a14-204;Slc25a14-205;Slc25a14-207;Slc25a14-202;Slc25a14-206;Slc25a14-208,Slc25a14;Slc25a14;Slc25a14;Slc25a14;Slc25a14;Slc25a14;Slc25a14;Slc25a14,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,3,20523,ENSMUSG00000031105,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
3387,cg10146459,-0.0000119,0.00000245,-4.876852727,0.00000173,loss,yes,0.0000143,0.00000416,3.442456234,0.000655655,pos,ns,0.003296585,0.001218636,2.705142927,0.007205038,pos,ns,2.142363741,-0.0000265,0.0000419,-0.632196954,0.527724161,neg,ns,0.063852955,Bcl6,Bcl6_Intron,16,23987110,23987159,23987158,23987159,50,+,ATTCTTACTCCCTCGAGGAGAGCCACAGGTTGCAAATCCAACCAACCTCG,"Intron (Bcl6-201/Bcl6, intron 1 of 9)",16,23965052,23988852,23801,2,Bcl6-201,1693,Bcl6-201;Gm37419-201,Bcl6;Gm37419,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,18,12053,ENSMUSG00000022508,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
1717,cg22001114,0.0000227,0.0000374,0.608104882,0.543563171,gain,ns,-0.000218449,0.0000635,-3.441487301,0.00065792,neg,ns,-0.013031497,0.018596109,-0.700764737,0.483975488,neg,ns,0.315176634,-0.000526528,0.000639519,-0.823319917,0.410959005,neg,ns,0.419127572,Tle4,Tle4_Intergenic_upstream,19,14777401,14777450,14777449,14777450,50,+,GATAAACTGTCACCCAAATTGCAAACTAATTAGTGATTCAAACATTTTCG,Distal Intergenic,19,14448150,14598051,149902,2,Tle4-202,-179350,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,29,21888,ENSMUSG00000024642,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17106,cg25973483,0.000106647,0.0000118,9.02056456,2.00E-17,gain,yes,-0.0000691,0.0000201,-3.44133271,0.000658282,neg,ns,-0.008207533,0.005884243,-1.394832404,0.164064994,neg,ns,0.784984074,0.00037835,0.000202359,1.869699267,0.062468087,pos,ns,0.526917165,Msi2,Msi2_Intron,11,88432128,88432177,88432176,88432177,50,-,CTTCAGAGAAGCACTCAAACAACTGTAAACCCATTAGATCATGTCAAACG,"Intron (Msi2-203/Msi2, intron 7 of 13)",11,88339382,88718229,378848,2,Msi2-203,286052,Gm11510-201;Msi2-203;Msi2-201;Msi2-207,Gm11510;Msi2;Msi2;Msi2,1337;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,21,36,76626,ENSMUSG00000069769,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6717,cg19719499,0.000103661,0.0000216,4.804832962,0.00000242,gain,ns,-0.000126122,0.0000367,-3.441064095,0.000658912,neg,ns,0.072255478,0.010737791,6.729082028,8.25E-11,pos,yes,10.08332882,-0.00242715,0.000369272,-6.572802822,2.09E-10,neg,yes,0.692283265,Gsk3b,Gsk3b_Exon,16,38184462,38184511,38184510,38184511,50,-,CTGGACTATGTTCCGGAAACAGTATACAGAGTTGCCAGACACTATAGTCG,"Exon (Gsk3b-201/Gsk3b, exon 4 of 11)",16,38089001,38246084,157084,1,Gsk3b-201,95461,Gsk3b-201;Gsk3b-202;Gsk3b-204;Gsk3b-203,Gsk3b;Gsk3b;Gsk3b;Gsk3b,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,11,56637,ENSMUSG00000022812,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
2963,cg13094532,-0.00000106,0.00000298,-0.356680474,0.721573678,loss,ns,0.0000174,0.00000507,3.441032938,0.000658985,pos,ns,0.005133337,0.001484673,3.457554776,0.000621286,pos,ns,3.206708386,-0.0000992,0.0000511,-1.943743655,0.052831031,neg,ns,0.935786397,Lrmda,Lrmda_Intron,14,22192304,22192353,22192352,22192353,50,-,GCAGTAGGTCCATCTTGGTGGCATCTGATGTTGATTGGCTTTGTCCTGCG,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,172592,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206,Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,14,22192352,22192427,76,*,76,8,0.565789474,1.375565611,0.105263158,0.00000148,CpGisland,TRUE,U11,Tr-P
988,cg27403476,0.0000183,0.00000915,1.994833336,0.046936309,gain,ns,0.0000535,0.0000155,3.439538218,0.000662499,pos,ns,0.005748932,0.004555048,1.262101239,0.207861063,pos,ns,0.682226856,-0.0000896,0.000156648,-0.572092671,0.567673812,neg,ns,0.734512347,Syt7,Syt7_Intron,19,10397989,10398038,10397989,10397990,50,+,CGAAGGGAGTGATTTCACAGCCTGTCAGCTGAGGCCTAAAAATACCCAGA,"Intron (Syt7-201/Syt7, intron 1 of 8)",19,10389090,10448444,59355,1,Syt7-201,8899,Syt7-201;Syt7-208;Syt7-206;Syt7-203;Syt7-202;Syt7-210;Syt7-211;Syt7-204;Syt7-205;Syt7-207;Syt7-209;Syt7-213;Syt7-214;Syt7-215,Syt7;Syt7;Syt7;Syt7;Syt7;Syt7;Syt7;Syt7;Syt7;Syt7;Syt7;Syt7;Syt7;Syt7,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,10,54525,ENSMUSG00000024743,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3799,cg10830920,-0.0000915,0.000072,-1.27205645,0.204306453,loss,ns,0.000420239,0.000122261,3.437230296,0.000667959,pos,ns,0.018211125,0.035818289,0.508430889,0.611512815,pos,ns,0.213594438,0.002061989,0.001231788,1.67398067,0.095142998,pos,ns,0.528037615,Celf4,Celf4_Exon,18,25481502,25481551,25481550,25481551,50,-,AAAACCAAACAACAGAAAGTAAAACCACTGCAAGCACCAAGAACGAAACG,"Exon (Celf4-204/Celf4, exon 1 of 1)",18,25477632,25753983,276352,2,Celf4-202,272432,Celf4-202;Celf4-201;Celf4-203;Celf4-207;Celf4-206;Celf4-208;Celf4-204,Celf4;Celf4;Celf4;Celf4;Celf4;Celf4;Celf4,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,31,59,108013,ENSMUSG00000024268,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26352,cg18203498,0.0000128,0.00000272,4.706293523,0.00000381,gain,ns,-0.0000159,0.00000462,-3.435595354,0.000671852,neg,ns,-0.00276827,0.001353348,-2.04549811,0.041649587,neg,ns,1.380389301,0.0000267,0.0000465,0.573401794,0.566788399,pos,ns,0.906241859,Kiz,Kiz_Exon,2,146956254,146956303,146956254,146956255,50,-,CGGAAGCTAGTTTTTCATCTAGTGAAGGAAGTCCTTTGTCAAGGTAAAGT,"Exon (Kiz-201/Kiz, exon 12 of 14)",2,146855864,146970097,114234,1,Kiz-201,100390,Kiz-201;Kiz-202,Kiz;Kiz,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,29,228730,ENSMUSG00000074749,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25978,cg26500922,0.0000636,0.0000114,5.577011685,5.33E-08,gain,yes,0.0000666,0.0000194,3.435012461,0.000673246,pos,ns,0.023385244,0.005677301,4.119077967,0.0000488,pos,ns,4.31114472,-0.000717713,0.000195242,-3.676019959,0.000279107,neg,ns,0.409991329,Tmem164,Tmem164_Exon,X,142682820,142682869,142682868,142682869,50,+,GGAGAGCCTGAGCAAGAATCTGCTCTTAGTAGCCCTGTGCCTGACCTTCG,"Exon (Tmem164-201/Tmem164, exon 2 of 7)",20,142681406,142843494,162089,1,Tmem164-204,1414,Tmem164-204;Tmem164-202;Tmem164-205;Tmem164-201;Tmem164-206;Tmem164-208;Tmem164-207,Tmem164;Tmem164;Tmem164;Tmem164;Tmem164;Tmem164;Tmem164,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,15,209497,ENSMUSG00000047045,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8420,cg12264936,-0.0000623,0.0000149,-4.184455498,0.0000373,loss,ns,0.0000868,0.0000253,3.434997545,0.000673281,pos,ns,0.022113645,0.007404242,2.986618587,0.003045793,pos,ns,2.516299629,-0.000465617,0.000254631,-1.82859519,0.068421,neg,ns,0.437794641,Kazald1,Kazald1_Intron,19,45104826,45104875,45104874,45104875,50,-,TGATTCAGGCATCAGATGGGCCGACAGCCAGAGATTAATTCAACTGATCG,"Intron (Gm35867-203/Gm35867-203, intron 2 of 4)",19,45076139,45079289,3151,1,Kazald1-201,28736,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,8,107250,ENSMUSG00000025213,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25334,cg25089365,-0.0000167,0.00000355,-4.698908335,0.00000394,loss,ns,-0.0000207,0.00000603,-3.43470591,0.000673979,neg,ns,-0.00239433,0.001767606,-1.354561069,0.176543861,neg,ns,0.753147379,-0.000094,0.0000608,-1.545613456,0.123218163,neg,ns,0.927928514,Srrm1,Srrm1_Exon,4,135345445,135345494,135345493,135345494,50,+,CAACCACCTTGAGTTTAATGTTATATCATTTATCTAAATTGCAAAAGACG,"Exon (Srrm1-212/Srrm1, exon 3 of 16)",4,135320484,135353321,32838,2,Srrm1-203,7827,Srrm1-203;Srrm1-202;Srrm1-208;Srrm1-201;Srrm1-212;Srrm1-204;Srrm1-214;Srrm1-205;Srrm1-207;Srrm1-209;Srrm1-206,Srrm1;Srrm1;Srrm1;Srrm1;Srrm1;Srrm1;Srrm1;Srrm1;Srrm1;Srrm1;Srrm1,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,8,51796,ENSMUSG00000028809,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22756,cg08509859,-0.00000403,0.00000378,-1.066126117,0.287196249,loss,ns,-0.0000221,0.00000643,-3.434333461,0.000674872,neg,ns,-0.006744586,0.001882836,-3.582141401,0.000395554,neg,ns,3.402794567,0.0000359,0.0000648,0.555137923,0.579200673,pos,ns,0.924468277,Dmbx1,Dmbx1_Exon,4,115920693,115920742,115920693,115920694,50,+,CGGGCCTCCAAGATGATGTCTTGAAATGTACAGCCGTTGGAGGGCAAGGA,"Exon (Dmbx1-201/Dmbx1, exon 2 of 4)",4,115915119,115925638,10520,2,Dmbx1-201,4896,Dmbx1-201;Dmbx1-203;Dmbx1-202,Dmbx1;Dmbx1;Dmbx1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,42,140477,ENSMUSG00000028707,conserved gene and region,4,115920644,115920728,85,*,85,9,0.576470588,1.287878788,0.105882353,0.000000223,CpGisland,TRUE,U11,Tr-P
22523,cg14878057,0.00000215,0.0000105,0.205885677,0.837015355,gain,ns,0.000061,0.0000178,3.434209832,0.000675169,pos,ns,0.011461453,0.005203234,2.202755816,0.028347592,pos,ns,1.547483833,0.000166208,0.000178939,0.928855521,0.353686645,pos,ns,0.853618339,Gm13973,Gm13973_Intron,2,114918872,114918921,114918920,114918921,50,+,TCGTCTGCTTGGCAAGTGCAGTGTGATGTCCATATGCTCTATTGTTCCCG,"Intron (Gm13974-201/Gm13974-201, intron 5 of 8)",2,115036419,115037312,894,2,Gm13973-201,118391,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,13,,NA,mapped to different genes,2,114918811,114918938,128,*,128,9,0.53125,1.004359198,0.0703125,0.00000707,CpGisland,TRUE,U15,NS
654,cg10997627,0.00000134,0.0000159,0.084504993,0.932709479,gain,ns,0.0000925,0.0000269,3.434196573,0.0006752,pos,ns,0.006787907,0.007894211,0.859858782,0.390531357,pos,ns,0.40834409,-0.00011519,0.000271481,-0.424300764,0.671640781,neg,ns,0.501735344,Tac1,Tac1_fiveUTR,6,7556729,7556778,7556729,7556730,50,-,CGGAGACCCAAGCCTCAGCAGTTCTTTGGATTAATGGGCAAACGGGATGC,5' UTR,6,7554879,7562977,8099,1,Tac1-205,1850,Tac1-205;Tac1-201;Tac1-203;Tac1-204,Tac1;Tac1;Tac1;Tac1,0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,1,21333,ENSMUSG00000061762,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
26923,cg11369802,0.00000301,0.0000121,0.247777713,0.804470437,gain,ns,0.0000708,0.0000206,3.431201303,0.000682422,pos,ns,0.004296168,0.006042838,0.710952074,0.477648498,pos,ns,0.320891583,0.000234407,0.000207813,1.127970381,0.26020466,pos,ns,0.732662217,Cacna1e,Cacna1e_fiveUTR,1,154725658,154725707,154725658,154725659,50,-,CGATGAGCTTCTTGGCATATTTCCTGACAATGTTATCTTCTCCGAAGATG,Promoter (<=1kb),1,154390731,154726356,335626,2,Cacna1e-203,649,Cacna1e-203;Cacna1e-201;Cacna1e-207;Cacna1e-206;Cacna1e-209;Cacna1e-204,Cacna1e;Cacna1e;Cacna1e;Cacna1e;Cacna1e;Cacna1e,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,9,19,12290,ENSMUSG00000004110,conserved gene but different region,1,154725658,154725913,256,*,256,21,0.6015625,0.907341772,0.08203125,1.74E-14,CpGisland,TRUE,U13,Hc-P
22971,cg13421440,0.000104778,0.000022,4.760205082,0.00000297,gain,ns,-0.000128274,0.0000374,-3.430322507,0.000684554,neg,ns,0.047562153,0.010955211,4.341509622,0.0000192,pos,ns,4.717043166,-0.001299363,0.000376749,-3.448883714,0.000640812,neg,ns,0.336076267,Rtca,Rtca_fiveUTR,3,116506946,116506995,116506946,116506947,50,+,CGAATCATTTCCAGTCCAGATAAATGTTGAGGCCTTCAGGTCATAATACT,5' UTR,3,116488963,116508208,19246,2,Rtca-201,1213,Rtca-201;Rtca-203;Rtca-205;Rtca-204,Rtca;Rtca;Rtca;Rtca,0;0;0;0,TRUE,FALSE,FALSE,TRUE,TRUE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,1,66368,ENSMUSG00000000339,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
1068,cg26718537,0.0000237,0.0000146,1.628119422,0.10451541,gain,ns,0.0000847,0.0000247,3.426990327,0.000692696,pos,ns,0.012470633,0.007242398,1.721892911,0.086086425,pos,ns,1.065065327,-6.03E-09,0.000249065,-0.0000242,0.999980703,neg,ns,0.785557574,Gm14515,Gm14515_Intergenic_upstream,X,11480063,11480112,11480111,11480112,50,+,CTCTGTTCATGGAGAACTTGCTTTTAAATGAGAGTCAATGGACCAGGTCG,Distal Intergenic,20,11601354,11601569,216,1,Gm14515-201,-121242,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,21,28,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6455,cg20451246,-0.0000471,0.0000112,-4.222311966,0.0000318,loss,ns,0.0000649,0.0000189,3.426528206,0.000693832,pos,ns,0.017315736,0.005549915,3.120000125,0.0019786,pos,ns,2.703642026,-0.000436687,0.000190861,-2.287984704,0.022811389,neg,ns,0.368289769,Zfp536,Zfp536_Intron,7,37342922,37342971,37342922,37342923,50,+,CGGATAGGCTACTCCAAATAAGTTCCATTAATCAAAAGACACAGTGTAAT,"Intron (Zfp536-211/Zfp536, intron 3 of 3)",7,37318024,37568390,250367,2,Zfp536-211,225419,Zfp536-211,Zfp536,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,73,112,243937,ENSMUSG00000043456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7626,cg21170961,0.000247076,0.0000155,15.91049202,4.40E-42,gain,yes,-0.0000904,0.0000264,-3.425891955,0.0006954,neg,ns,0.013957602,0.00772899,1.805876464,0.071907514,pos,ns,1.143225725,0.000268815,0.000265799,1.011347094,0.312639049,pos,ns,0.295506164,Zbtb20,Zbtb20_Intron,16,43503472,43503521,43503472,43503473,50,+,CGGGCAGGCTGACCCAGTGCCTCCAGGGACTTATCAATAGACCACTCAGA,"Intron (Zbtb20-211/Zbtb20, intron 4 of 4)",16,42907542,43569781,662240,1,Zbtb20-211,595930,Zbtb20-211;Zbtb20-217;Zbtb20-204;Zbtb20-215;Zbtb20-201;Zbtb20-203;Zbtb20-214;Zbtb20-213;Zbtb20-219;Zbtb20-216;Zbtb20-208;Zbtb20-207;Zbtb20-220;Zbtb20-206;Zbtb20-221;Zbtb20-202,Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,98,56490,ENSMUSG00000022708,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
9922,cg20817759,-0.00000229,0.00000161,-1.41882881,0.156953536,loss,ns,-0.00000939,0.00000274,-3.423355631,0.000701681,neg,ns,0.002889689,0.000803346,3.597067771,0.000374403,pos,ns,3.426661203,-0.0000748,0.0000276,-2.708597108,0.007132208,neg,ns,0.970585182,Snx10,Snx10_Intergenic_downstream,6,51593854,51593903,51593854,51593855,50,-,CGCACAATGAATCGGGAAGGATTTATGTAATTAATTGACCAGTCTTAACC,Distal Intergenic,6,51544566,51589043,44478,1,Snx10-205,49337,Snx10-201;Snx10-207;Snx10-202;Snx10-205,Snx10;Snx10;Snx10;Snx10,0;0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,10,71982,ENSMUSG00000038301,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11030,cg07518195,-0.00000597,0.00000609,-0.980828432,0.327442192,loss,ns,0.0000354,0.0000103,3.422964757,0.000702653,pos,ns,0.000773621,0.00303096,0.255239641,0.798707272,pos,ns,0.097612361,-0.000273777,0.000104234,-2.62655198,0.009053936,neg,ns,0.789375076,Gm13518,Gm13518_Intergenic_downstream,2,56316559,56316608,56316607,56316608,50,-,AGTACTGCAACATGGTAATAATAACATCCCAGCTGTAGCCACAATCACCG,Distal Intergenic,2,56039853,56040085,233,1,Gm13518-201,276755,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,37,37,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21950,cg00059897,-0.00000226,0.00000395,-0.573440036,0.566762545,loss,ns,0.000023,0.00000671,3.422861812,0.00070291,pos,ns,0.006377232,0.001965388,3.244769256,0.001303865,pos,ns,2.884767239,-0.000118255,0.0000676,-1.749605426,0.081175929,neg,ns,0.90198748,Faf1,Faf1_Intron,4,109806374,109806423,109806422,109806423,50,+,CTTTGAGTGGCAGTTACATATCAAACCTCACGGGGGTTTGACAGGCAACG,"Intron (Faf1-201/Faf1, intron 8 of 18)",4,109676588,109963960,287373,1,Faf1-201,129786,Faf1-201,Faf1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,24,14084,ENSMUSG00000010517,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14195,cg23027674,-0.00000472,0.00000888,-0.531570346,0.595404302,loss,ns,0.0000516,0.0000151,3.422558653,0.000703665,pos,ns,0.004294584,0.00441941,0.971755126,0.33192999,pos,ns,0.478953507,0.000177311,0.000151983,1.166651389,0.244247865,pos,ns,0.925526104,Myo5b,Myo5b_Exon,18,74742129,74742178,74742177,74742178,50,+,CACAATGATGACTTTGAGATGACGTCATTCTGGTTATCCAACACCTGCCG,"Exon (Myo5b-201/Myo5b, exon 34 of 39)",18,74442537,74771493,328957,1,Myo5b-201,299592,Myo5b-201;Myo5b-203;Myo5b-210,Myo5b;Myo5b;Myo5b,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,17919,ENSMUSG00000025885,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14572,cg08481155,0.0000393,0.0000136,2.882510935,0.004220829,gain,ns,0.0000793,0.0000232,3.421691014,0.000705831,pos,ns,0.017474108,0.006790852,2.57318343,0.010541534,pos,ns,1.977096182,-0.000301418,0.000233537,-1.290667398,0.197780791,neg,ns,0.489824642,Scrt1,Scrt1_threeUTR,15,76516496,76516545,76516544,76516545,50,-,ACAAAATAGGTGCTACCTAAACGTTCCTTCTACCTGAATTCGCTAAGTCG,3' UTR,15,76516203,76522499,6297,2,Scrt1-201,5954,Dgat1-201;Dgat1-210;Dgat1-212;Dgat1-211;Dgat1-209;Scrt1-201;Scrt1-202,Dgat1;Dgat1;Dgat1;Dgat1;Dgat1;Scrt1;Scrt1,-4545;-4816;-4822;-4543;-4670;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,6,170729,ENSMUSG00000048385,conserved gene and region,15,76516517,76516632,116,*,116,9,0.612068966,0.892307692,0.077586207,0.00000318,CpGisland,TRUE,U13,Hc-P
3896,cg12124064,0.0000079,0.0000137,0.575269136,0.565526594,gain,ns,0.0000798,0.0000233,3.42110958,0.000707287,pos,ns,0.014870544,0.0068354,2.1755193,0.03034645,pos,ns,1.517892105,-0.000158094,0.000235069,-0.672543839,0.501738524,neg,ns,0.287456587,Celf4,Celf4_Intron,18,25694177,25694226,25694225,25694226,50,+,CATTTCCATCCAGGCGGCTCTCCAAGACGAAATTTTTCTACTGGGAACCG,"Intron (Celf4-202/Celf4, intron 1 of 12)",18,25477632,25753983,276352,2,Celf4-202,59757,Celf4-202;Celf4-201;Celf4-203;Celf4-207;Celf4-206;Celf4-209;Celf4-205,Celf4;Celf4;Celf4;Celf4;Celf4;Celf4;Celf4,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,59,108013,ENSMUSG00000024268,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26580,cg04290831,0.000151842,0.0000131,11.57360797,5.46E-26,gain,yes,-0.0000762,0.0000223,-3.420106208,0.000709805,neg,ns,0.019879876,0.006529777,3.04449541,0.00253051,pos,ns,2.596791879,-0.000712434,0.000224558,-3.172598791,0.001662237,neg,ns,0.469414728,Casz1,Casz1_Intron,4,148926203,148926252,148926203,148926204,50,+,CGTTTATATTTTAGGGAAGAAAGTCAGAGGAATGTTTACATGGACAGGAG,"Intron (Casz1-201/Casz1, intron 4 of 15)",4,148804429,148945129,140701,1,Casz1-201,121774,Casz1-201;Casz1-202;Casz1-206,Casz1;Casz1;Casz1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,94,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12196,cg16723927,0.000104256,0.0000167,6.255665145,1.31E-09,gain,yes,-0.0000968,0.0000283,-3.420026181,0.000710006,neg,ns,0.080726077,0.008294757,9.732181433,1.05E-19,pos,yes,18.98030755,-0.001487847,0.000285256,-5.215831059,0.000000335,neg,yes,0.607414712,Map2k5,Map2k5_Intron,9,63322430,63322479,63322430,63322431,50,-,CGATACCAAGGGACGAAGTGATGGAAAGTTTAATGACAATTTGTTTGCCT,"Intron (Map2k5-201/Map2k5, intron 7 of 21)",9,63163768,63377902,214135,2,Map2k5-201,55423,Map2k5-201,Map2k5,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,34,37,23938,ENSMUSG00000058444,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23053,cg09347937,0.0000186,0.00000518,3.588542896,0.000386349,gain,ns,-0.0000301,0.00000881,-3.420010023,0.000710046,neg,ns,-0.008146326,0.002580069,-3.157406234,0.001748444,neg,ns,2.757348329,0.000266617,0.0000887,3.004866037,0.00287379,pos,ns,0.806827413,Taok3,Taok3_fiveUTR,5,117240954,117241003,117240954,117240955,50,-,CGTGGGAGCTGCGGGGACTAGCAGAGAGCTAAACTATGCATTTCAAACAG,5' UTR,5,117120129,117275217,155089,1,Taok3-203,120825,Taok3-203;Taok3-210;Taok3-201;Taok3-205;Taok3-208;Taok3-202,Taok3;Taok3;Taok3;Taok3;Taok3;Taok3,0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,11,20,330177,ENSMUSG00000061288,conserved gene and region,5,117240845,117241057,213,*,213,11,0.549295775,0.743809524,0.051643193,0.00000834,CpGisland,TRUE,U10,Tr-S
12297,cg07110894,-0.0000209,0.000014,-1.49207476,0.136696486,loss,ns,0.0000812,0.0000237,3.419552308,0.000711198,pos,ns,0.022400062,0.006956235,3.220141824,0.001417206,pos,ns,2.848566902,-0.000571313,0.000239224,-2.388188329,0.017530019,neg,ns,0.628126259,Gm18541,Gm18541_Intergenic_upstream,9,63876519,63876568,63876567,63876568,50,-,GCAACAAAGCACAAGTCTTATTAATTTAGCTCAATCAAATCAGCACCACG,Distal Intergenic,9,63898265,63898802,538,1,Gm18541-201,-21746,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,13,100417338,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19704,cg03853119,0.0000709,0.00000966,7.343004582,1.85E-12,gain,yes,0.0000561,0.0000164,3.419085994,0.000712373,pos,ns,0.020141887,0.00480775,4.189461962,0.0000365,pos,ns,4.437730136,-0.000331098,0.000165338,-2.002548199,0.046096404,neg,ns,0.447814162,Dlg3,Dlg3_Exon,X,100768083,100768132,100768131,100768132,50,+,CCAGCACTGCTGTAAGTGCCCTGAGTGCTATGAGGTGACCCGCCTGGCCG,Promoter (<=1kb),20,100767722,100818406,50685,1,Dlg3-201,361,Dlg3-201;Dlg3-204;Dlg3-202;Dlg3-206,Dlg3;Dlg3;Dlg3;Dlg3,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,11,53310,ENSMUSG00000000881,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
26231,cg25611243,-0.0000163,0.0000132,-1.237523443,0.21682933,loss,ns,0.0000764,0.0000224,3.418975968,0.000712651,pos,ns,0.018187583,0.006548596,2.777325484,0.0058146,pos,ns,2.235480158,-0.000328577,0.000225206,-1.459007706,0.145575478,neg,ns,0.871790257,Sox5,Sox5_Intergenic_upstream,6,144871553,144871602,144871553,144871554,50,+,CGGGCATCTCTGTAATTGAAAACCAGTGGGTGATAATTCTGTACTGAAAA,Distal Intergenic,6,143843739,144781977,938239,2,Sox5-209,-89576,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,71,20678,ENSMUSG00000041540,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7994,cg07919443,0.0000478,0.00000925,5.16331947,0.000000435,gain,yes,0.0000537,0.0000157,3.418674596,0.000713412,pos,ns,0.017973838,0.004604254,3.903745626,0.000116246,pos,ns,3.934620151,-0.000202421,0.00015834,-1.27839824,0.202065344,neg,ns,0.176604728,Pax2,Pax2_Intergenic_upstream,19,44674915,44674964,44674915,44674916,50,+,CGGCATATTTGCTGCTTGGCTAGCCAAATAGAAGTTGTTTTTTGCACAAA,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-81081,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,19,44674652,44674916,265,*,265,31,0.59245283,1.339693412,0.116981132,3.55E-26,CpGisland,TRUE,U13,Hc-P
24778,cg22535472,-0.00000261,0.00000148,-1.770364865,0.07764916,loss,ns,0.00000858,0.00000251,3.418085544,0.000714901,pos,ns,0.00177122,0.000735048,2.409666004,0.016549561,pos,ns,1.781213529,-0.0000625,0.0000253,-2.471928743,0.013975353,neg,ns,0.967422537,Gm43656,Gm43656_Intergenic_upstream,3,128450576,128450625,128450624,128450625,50,-,CAAGAAGGCTCAATTTTACAGTTATAGTGCCTAATGCCTAAACATGAGCG,Distal Intergenic,3,128280658,128281091,434,2,Gm43656-201,-169534,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,8,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26326,cg18893738,0.0000245,0.000013,1.885634467,0.060279103,gain,ns,0.0000754,0.0000221,3.417310617,0.000716864,pos,ns,0.020013764,0.006463228,3.096558312,0.002136754,pos,ns,2.670245468,-0.000358294,0.00022227,-1.611976573,0.107984623,neg,ns,0.773011066,Gm14111,Gm14111_Intergenic_downstream,2,146745716,146745765,146745716,146745717,50,-,CGCTTTGATGAGGCGAATTCAATCTCCCTGCTGTAATGACAATGGGGCCA,Distal Intergenic,2,146754707,146755705,999,2,Gm14111-201,9989,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,15,17,668918,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21313,cg23549256,0.0000295,0.00000637,4.628794294,0.00000542,gain,ns,-0.000037,0.0000108,-3.416776048,0.000718221,neg,ns,0.004164477,0.003170432,1.313535858,0.189973762,pos,ns,0.721306377,-0.000320027,0.000109031,-2.935191832,0.003582552,neg,ns,0.810222313,Rbm15,Rbm15_Exon,3,107330577,107330626,107330577,107330578,50,+,CGCTGAGTGATCTTGAGCTGGGCCACTTTGCCTCCAGTTGAACCCTCCAC,"Exon (Rbm15-201/Rbm15, exon 1 of 2)",3,107325421,107333673,8253,2,Rbm15-201,3047,Rbm15-201;Rbm15-202,Rbm15;Rbm15,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,9,229700,ENSMUSG00000048109,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U4,Pr-F
20145,cg00017737,-0.0000137,0.00000874,-1.565379245,0.118514211,loss,ns,0.0000507,0.0000148,3.416107805,0.000719922,pos,ns,0.00358286,0.00434807,0.824011656,0.41056645,pos,ns,0.386616542,0.000155183,0.00014953,1.037803936,0.300170149,pos,ns,0.864757191,Calcoco1,Calcoco1_Intergenic_upstream,15,102737379,102737428,102737427,102737428,50,+,AATGTCTCGGAATTGGTGTAATTCAGAGAAATTAATGACGACTTTCCGCG,Distal Intergenic,15,102706777,102722178,15402,2,Calcoco1-201,-15201,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,20,29,67488,ENSMUSG00000023055,conserved gene but different region,15,102737359,102737627,269,*,269,21,0.565055762,0.991922739,0.078066915,4.85E-14,CpGisland,TRUE,U11,Tr-P
10072,cg13369768,0.000102777,0.0000131,7.863662141,6.24E-14,gain,yes,-0.0000758,0.0000222,-3.415825723,0.00072064,neg,ns,0.083980354,0.006505032,12.91005955,8.30E-31,pos,yes,30.08111067,-0.001160343,0.000223708,-5.186876059,0.000000387,neg,yes,0.682592147,Dhx15,Dhx15_Exon,5,52157580,52157629,52157628,52157629,50,+,AAACAAGGTTGGTATGGGCCCAACACAAACGCCCATATCGATGAGTCACG,"Exon (Dhx15-206/Dhx15, exon 1 of 2)",5,52150203,52190514,40312,2,Dhx15-201,32885,Dhx15-201;Dhx15-207;Dhx15-206;Dhx15-205;Dhx15-204,Dhx15;Dhx15;Dhx15;Dhx15;Dhx15,0;0;0;0;4004,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,14,13204,ENSMUSG00000029169,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4415,cg21129531,0.000183782,0.0000129,14.21734028,1.16E-35,gain,yes,-0.000075,0.000022,-3.415184375,0.000722277,neg,ns,-0.010627212,0.006433702,-1.651803585,0.099587121,neg,ns,1.001796824,0.000632808,0.000221254,2.860089198,0.004522667,pos,ns,0.814180663,Lrrc4,Lrrc4_fiveUTR,6,28831624,28831673,28831624,28831625,50,+,CGTTCATAATTCACCATCGCCTGGGATTTTGGCTCGGAAAGGAGAACCAG,Promoter (<=1kb),6,28828133,28831747,3615,2,Lrrc4-201,74,Lrrc4-202;Lrrc4-201;Snd1-203;Snd1-201;Snd1-206;Snd1-210;Snd1-209,Lrrc4;Lrrc4;Snd1;Snd1;Snd1;Snd1;Snd1,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,6,192198,ENSMUSG00000049939,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
18892,cg06946661,0.0000578,0.00000715,8.092493662,1.34E-14,gain,yes,-0.0000415,0.0000121,-3.414854866,0.00072312,neg,ns,0.006217421,0.003557566,1.747661222,0.081512812,pos,ns,1.088774126,0.0000327,0.000122344,0.267199549,0.789493194,pos,ns,0.838943758,Nfia,Nfia_Intron,4,97844214,97844263,97844214,97844215,50,+,CGGTAAATCAGATGTTGAAGAAAGTACCAGCTTAACTTCACTTTGCTTTA,"Intron (Nfia-208/Nfia, intron 2 of 3)",4,97772734,98000466,227733,1,Nfia-208,71480,Nfia-208;Nfia-202;Nfia-203;Nfia-205;Nfia-201;Nfia-204,Nfia;Nfia;Nfia;Nfia;Nfia;Nfia,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,44,18027,ENSMUSG00000028565,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26070,cg00756693,0.0000133,0.00000812,1.634406197,0.103188638,gain,ns,0.0000471,0.0000138,3.41431885,0.000724492,pos,ns,0.006949848,0.004041361,1.719680164,0.086488691,pos,ns,1.063040677,-0.000059,0.000138982,-0.424240254,0.671684858,neg,ns,0.845442097,B3galt2,B3galt2_Exon,1,143647133,143647182,143647133,143647134,50,-,CGTTTGCACTTGGAAGATGTATATGTAGGGATCTGTCTTGCCAAGTTGAG,"Exon (B3galt2-201/B3galt2, exon 2 of 2)",1,143640664,143654614,13951,1,B3galt2-201,6469,B3galt2-201;Cdc73-201;Cdc73-205,B3galt2;Cdc73;Cdc73,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,3,26878,ENSMUSG00000033849,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8470,cg17393488,0.0000917,0.0000534,1.717707768,0.086848546,gain,ns,0.000309741,0.0000907,3.413715615,0.000726039,pos,ns,0.046970487,0.026582089,1.766997565,0.07821255,pos,ns,1.106723554,-0.000270217,0.000914156,-0.295592276,0.767739366,neg,ns,0.723382617,Zeb2,Zeb2_Intergenic_upstream,2,45221966,45222015,45221966,45221967,50,-,CGCACCCAGATTAAATGGGTGCATTAGTTGATTGTTTCTGGTATGAAGAT,Distal Intergenic,2,44983632,45117395,133764,2,Zeb2-212,-104620,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,9,158,24136,ENSMUSG00000026872,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18006,cg09562327,-0.00000182,0.0000067,-0.272428361,0.785474036,loss,ns,0.0000388,0.0000114,3.413525968,0.000726526,pos,ns,0.006557037,0.003333378,1.967084875,0.050064957,pos,ns,1.300466148,-0.000127134,0.000114635,-1.109034798,0.268274792,neg,ns,0.845953475,Arx,Arx_Intergenic_downstream,X,93301544,93301593,93301592,93301593,50,-,CATTAAGAAATGTCATTCAGTCATTTTTATTCATTCTCCGGAAATCTTCG,Distal Intergenic,20,93286510,93298062,11553,1,Arx-202,15083,Arx-201;Arx-202;Pola1-201,Arx;Arx;Pola1,0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,32,11878,ENSMUSG00000035277,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25887,cg12291306,0.0000058,0.0000064,0.905793904,0.365748413,gain,ns,0.0000371,0.0000109,3.413132947,0.000727536,pos,ns,0.005603167,0.003184432,1.759549854,0.079470522,pos,ns,1.099793933,-0.000175218,0.000109512,-1.599984925,0.110620529,neg,ns,0.514830223,Frmpd3,Frmpd3_Exon,X,140404513,140404562,140404561,140404562,50,+,CATCAGCCATGTTATTGACCTCAAAACCAACCTCACCACTGTGCTGTCCG,"Exon (Frmpd3-203/Frmpd3, exon 12 of 15)",20,140342263,140435467,93205,1,Frmpd3-203,62250,Frmpd3-203,Frmpd3,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,10,245643,ENSMUSG00000042425,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23468,cg00538388,0.0000442,0.0000041,10.78096653,3.17E-23,gain,yes,-0.0000238,0.00000697,-3.412267856,0.000729764,neg,ns,-0.001699388,0.002041748,-0.832320335,0.405868876,neg,ns,0.391614252,0.0000125,0.0000702,0.17780138,0.858995088,pos,ns,0.765527248,Clasp1,Clasp1_Exon,1,118536095,118536144,118536143,118536144,50,+,GTGTTAATCCTGTGGGTGTTGCCATTCCTTTTACCTGCAGCCTCTCGACG,"Exon (Clasp1-202/Clasp1, exon 24 of 41)",1,118389058,118609432,220375,1,Clasp1-201,147037,Clasp1-201;Clasp1-202;Clasp1-204;Clasp1-218;Clasp1-219;Clasp1-208;Clasp1-216;Clasp1-203;Clasp1-214;Clasp1-220;Clasp1-212;Clasp1-206;Clasp1-205;Clasp1-210;Clasp1-224;Clasp1-221;Clasp1-230;Clasp1-226;Clasp1-213,Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,8,76707,ENSMUSG00000064302,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11438,cg14512779,0.0000336,0.00000939,3.575088711,0.000405933,gain,ns,0.0000544,0.000016,3.411469047,0.000731828,pos,ns,0.026005394,0.004674807,5.562880434,5.74E-08,pos,ns,7.241158545,-0.000623107,0.000160766,-3.875858662,0.000129703,neg,ns,0.25515714,Gm14649,Gm14649_Intergenic_downstream,X,58155552,58155601,58155552,58155553,50,-,CGTGATCAAGGCCTCAGCAGGTGATGAGAAAGGCATGAGAACAAGCTGGA,Distal Intergenic,20,58184163,58184486,324,2,Gm14649-201,28934,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,4,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1110,cg18778101,-0.000078,0.0000112,-6.949438877,2.17E-11,loss,yes,0.000065,0.0000191,3.409031995,0.000738156,pos,ns,0.020583878,0.00558904,3.68290016,0.000271987,pos,ns,3.565451923,-0.000940846,0.000192207,-4.894970776,0.00000158,neg,yes,0.333464985,Gm14515,Gm14515_Intergenic_downstream,X,11631261,11631310,11631309,11631310,50,-,AAAGAATTTGCTGGAATCTGCAAGGGAGCTCCTGGCAGCAAGAAAATGCG,Distal Intergenic,20,11601354,11601569,216,1,Gm14515-201,29956,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,28,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27561,cg26767155,0.00002,0.00000814,2.456248929,0.014587741,gain,ns,0.0000471,0.0000138,3.408195135,0.000740341,pos,ns,0.020014461,0.00404921,4.942806706,0.00000126,pos,ns,5.898586491,-0.00047452,0.000139252,-3.407632111,0.000741814,neg,ns,0.597303655,Mid1,Mid1_Exon,X,169927576,169927625,169927576,169927577,50,+,CGATGACCAGTTAATCTGTGCCTTGTGTAAACTGGTTGGGCGGCACCGCG,"Exon (Mid1-204/Mid1, exon 2 of 10)",20,169685199,169990795,305597,1,Mid1-206,242377,Mid1-206;Mid1-204;Mid1-201;Mid1-205;Mid1-202;Mid1-214;Mid1-215;Mid1-211,Mid1;Mid1;Mid1;Mid1;Mid1;Mid1;Mid1;Mid1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,8,17318,ENSMUSG00000035299,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11178,cg19658834,0.000111316,0.0000115,9.660061773,1.80E-19,gain,yes,-0.0000667,0.0000196,-3.408170397,0.000740406,neg,ns,0.026808841,0.005735296,4.674360144,0.0000044,pos,ns,5.356090463,-0.000460031,0.000197236,-2.332385245,0.02032035,neg,ns,0.66916149,Satb2,Satb2_Exon,1,56845602,56845651,56845650,56845651,50,+,CAAACAGGGCTTGAGACACCTTGGCCCTTTTCATCTCCTGTTGGATCTCG,"Exon (Satb2-201/Satb2, exon 8 of 10)",1,56793981,56972502,178522,2,Satb2-201,126851,Satb2-201;Satb2-202;Satb2-205,Satb2;Satb2;Satb2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,33,212712,ENSMUSG00000038331,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8092,cg15547395,0.00000775,0.00000547,1.41619375,0.157722779,gain,ns,0.0000317,0.00000929,3.407885265,0.000741151,pos,ns,0.007247391,0.002722578,2.661959088,0.008173849,pos,ns,2.087573375,-0.0000509,0.0000936,-0.543923126,0.586885342,neg,ns,0.875453792,Ebf1,Ebf1_Intron,11,44739820,44739869,44739868,44739869,50,+,GGTGTCTTACAATAAGCTGGCTGCATTAGTGCCGGGAAAAATCAATACCG,"Intron (Ebf1-203/Ebf1, intron 6 of 15)",11,44617317,45004995,387679,1,Ebf1-203,122503,Ebf1-203;Ebf1-202;Ebf1-201,Ebf1;Ebf1;Ebf1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,80,13591,ENSMUSG00000057098,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16035,cg13282050,0.0000184,0.00000451,4.077028576,0.000058,gain,ns,-0.0000261,0.00000766,-3.407292479,0.000742704,neg,ns,-0.005997777,0.00224399,-2.672818213,0.007919788,neg,ns,2.101286448,0.0000994,0.0000772,1.28772483,0.198802235,pos,ns,0.900534405,Acaca,Acaca_Intron,11,84272140,84272189,84272188,84272189,50,-,AGGCCTTCAATTTTCTTCAGAGTCCAGTCACTCAAGTGTGTAATTACGCG,"Intron (Acaca-202/Acaca, intron 25 of 55)",11,84173122,84401651,228530,1,Acaca-202,99018,Acaca-202;Acaca-201,Acaca;Acaca,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,28,28,107476,ENSMUSG00000020532,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15118,cg00443041,-0.0000164,0.00000651,-2.513925979,0.012445997,loss,ns,-0.0000377,0.0000111,-3.40645409,0.000744906,neg,ns,0.014762358,0.003241173,4.554633713,0.00000755,pos,ns,5.121899243,-0.000497677,0.000111464,-4.464928193,0.0000112,neg,ns,0.872470825,Wsb1,Wsb1_threeUTR,11,79243427,79243476,79243427,79243428,50,+,CGAATGCAAGGTTACTTCATCCTATGGTAAAGGTCGCCCCCAGCCCGGTA,3' UTR,11,79239372,79254671,15300,2,Wsb1-201,11195,Wsb1-201;Wsb1-206;Wsb1-202;Wsb1-207;Wsb1-205;Wsb1-203;Wsb1-204,Wsb1;Wsb1;Wsb1;Wsb1;Wsb1;Wsb1;Wsb1,0;-403;0;-478;0;0;7548,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,7,7,78889,ENSMUSG00000017677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6703,cg17917881,0.000127527,0.0000138,9.229972564,4.36E-18,gain,yes,-0.0000799,0.0000235,-3.405814404,0.00074659,neg,ns,0.012038416,0.006876677,1.750615263,0.081001398,pos,ns,1.091507486,-0.000660316,0.000236488,-2.792172185,0.005560702,neg,ns,0.698879437,Dennd1a,Dennd1a_Intron,2,38137302,38137351,38137350,38137351,50,+,GGATCAGAGTGAATAACACCGAGCCACATGGGTTTGGCCTGGCAGGGCCG,"Intron (Dennd1a-201/Dennd1a, intron 3 of 21)",2,37798991,38287375,488385,2,Dennd1a-201,150024,Dennd1a-201;Dennd1a-207;Dennd1a-210;Dennd1a-204;Dennd1a-202;Dennd1a-209;Dennd1a-208,Dennd1a;Dennd1a;Dennd1a;Dennd1a;Dennd1a;Dennd1a;Dennd1a,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,46,227801,ENSMUSG00000035392,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23589,cg17421638,-0.0000464,0.0000153,-3.0238102,0.002704686,loss,ns,0.0000887,0.0000261,3.405535456,0.000747325,pos,ns,-0.007615688,0.007632373,-0.997813896,0.319147826,neg,ns,0.49600811,0.000117591,0.000262477,0.448007393,0.654460793,pos,ns,0.626060991,Med13l,Med13l_Intergenic_downstream,5,119143619,119143668,119143619,119143620,50,-,CGTCATAATCTTGTGTCACAGCAGCATCTAAACACAGCTGATTGAGATGC,Distal Intergenic,5,118750387,118763916,13530,1,Med13l-206,393281,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,16,76199,ENSMUSG00000018076,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10478,cg06448663,-0.00001,0.00000311,-3.22338943,0.001401755,loss,ns,0.000018,0.00000528,3.405054743,0.000748594,pos,ns,0.003376911,0.001546324,2.183831341,0.029723918,pos,ns,1.526893948,-0.000110309,0.0000532,-2.074343689,0.03887244,neg,ns,0.917812804,Hecw2,Hecw2_Exon,1,53827901,53827950,53827901,53827902,50,+,CGTTGTTCATTGTTGAATCTTTCCACTGCAGCCCAGAACCACCGAATTAC,"Exon (Hecw2-203/Hecw2, exon 27 of 29)",1,53806876,54194048,387173,2,Hecw2-203,366098,Hecw2-203;Hecw2-201;Hecw2-205,Hecw2;Hecw2;Hecw2,0;0;13221,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,6,329152,ENSMUSG00000042807,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11358,cg01360156,0.00005,0.000014,3.567443819,0.000417473,gain,ns,-0.000081,0.0000238,-3.403863299,0.000751747,neg,ns,0.061029009,0.006969156,8.757015908,1.33E-16,pos,yes,15.87760489,-0.001463338,0.000239669,-6.105670193,3.06E-09,neg,yes,0.692299245,Clk3,Clk3_Exon,9,57758820,57758869,57758820,57758821,50,+,CGGTGAGGAGCCGGTGGGTTGGTTGGTTGGATTTTCCAGATCCCAGCATT,"Exon (Clk3-207/Clk3, exon 3 of 12)",9,57750624,57765103,14480,2,Clk3-207,6234,Clk3-207;Clk3-201;Clk3-205;Clk3-203;Clk3-206;Clk3-209;Clk3-208;Clk3-204,Clk3;Clk3;Clk3;Clk3;Clk3;Clk3;Clk3;Clk3,0;0;0;0;-3499;0;5439;5984,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,14,102414,ENSMUSG00000032316,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
14493,cg00717629,0.0000262,0.00000903,2.905073859,0.003935733,gain,ns,0.0000522,0.0000153,3.403758426,0.000752025,pos,ns,-0.002145457,0.00449641,-0.477148941,0.633592271,neg,ns,0.198190129,0.000345236,0.000154631,2.23264068,0.026286497,pos,ns,0.70464461,Zbtb7c,Zbtb7c_Intron,18,76011100,76011149,76011100,76011101,50,-,CGATGCATTTTCTGGCCTTTGTTGGTTTGTGTCAGCTCTTGAACATTATT,"Intron (Zbtb7c-201/Zbtb7c, intron 2 of 4)",18,75820178,76148564,328387,1,Zbtb7c-201,190922,Zbtb7c-201;Zbtb7c-203,Zbtb7c;Zbtb7c,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,4,207259,ENSMUSG00000044646,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12239,cg25326950,0.0000308,0.00000716,4.293612045,0.0000235,gain,ns,-0.0000414,0.0000122,-3.402525886,0.000755302,neg,ns,0.015645315,0.003564978,4.388614362,0.0000157,pos,ns,4.805189718,-0.00009,0.000122599,-0.734151709,0.463411192,neg,ns,0.901523548,Ptch1,Ptch1_Intron,13,63554990,63555039,63554990,63554991,50,+,CGAGAAAAAAGTGAGTGTGTTCTTGCCCTAACATTCTGGATCTGCTTGCA,"Intron (Ptch1-201/Ptch1, intron 2 of 22)",13,63508328,63565735,57408,2,Ptch1-201,10696,Ptch1-201;Ptch1-204;Ptch1-206;Ptch1-202;Ptch1-207;Ptch1-203;Ptch1-205,Ptch1;Ptch1;Ptch1;Ptch1;Ptch1;Ptch1;Ptch1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,36,19206,ENSMUSG00000021466,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22038,cg27609967,-0.0000318,0.00000934,-3.407103453,0.0007432,loss,ns,0.000054,0.0000159,3.401385145,0.000758346,pos,ns,-0.002967409,0.004648336,-0.638380986,0.523697022,neg,ns,0.280919896,0.000216995,0.000159856,1.357440206,0.175628756,pos,ns,0.555390783,Elavl4,Elavl4_fiveUTR,4,110286691,110286740,110286739,110286740,50,-,AGCATTTACTGAAGCCCAAATAAATCACTCTCTTTGCCGTTTTGACTGCG,Promoter (<=1kb),4,110203722,110287527,83806,2,Elavl4-204,787,Elavl4-204;Elavl4-201;Elavl4-203;Elavl4-202;Elavl4-205;Elavl4-206;Elavl4-207;Elavl4-208;Elavl4-212;Elavl4-209,Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,7,36,15572,ENSMUSG00000028546,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19938,cg06071123,0.0000118,0.00000271,4.347861473,0.0000187,gain,ns,-0.0000157,0.00000461,-3.400160795,0.000761626,neg,ns,-0.003879666,0.001350372,-2.87303437,0.004346087,neg,ns,2.361901541,0.000124974,0.0000464,2.691140212,0.007507196,pos,ns,0.841501515,Uchl3,Uchl3_Exon,14,101685664,101685713,101685712,101685713,50,+,CGTAACCATGTAGGCCCTGCAAAGGCTACCAGTCCATCTCTCCGTCTTCG,"Exon (Uchl3-202/Uchl3, exon 5 of 8)",14,101653994,101696125,42132,1,Uchl3-201,31670,Uchl3-201;Uchl3-205;Uchl3-202,Uchl3;Uchl3;Uchl3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,50933,ENSMUSG00000022111,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1664,cg16193888,0.0000744,0.000016,4.637815908,0.0000052,gain,ns,0.0000926,0.0000272,3.398898981,0.000765021,pos,ns,0.016298613,0.007981799,2.041972302,0.042000344,pos,ns,1.37674715,-0.000203582,0.000274493,-0.741663943,0.458852474,neg,ns,0.22018712,Gm26993,Gm26993_Intergenic_upstream,19,14124019,14124068,14124067,14124068,50,-,TGCAATGAATATGGATGTTTTCAATTATCACAGTCTTCCAGGGCTATACG,Distal Intergenic,19,14017583,14018371,789,2,Gm26993-201,-105697,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,8,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
5576,cg01607361,-0.0000132,0.00000732,-1.797225501,0.073273007,loss,ns,-0.0000422,0.0000124,-3.398471155,0.000766175,neg,ns,-0.005854033,0.003641689,-1.607504986,0.108961628,neg,ns,0.962726416,-0.0000183,0.000125237,-0.146152452,0.883896032,neg,ns,0.855021946,4931406P16Rik,4931406P16Rik_Exon,7,34285081,34285130,34285081,34285082,50,+,CGGCCCAGCTCAGGCATCGGGTATTGCTGGTGCTGCTGCACCTTCTGCTT,"Exon (4931406P16Rik-202/4931406P16Rik, exon 2 of 14)",7,34236707,34313551,76845,2,4931406P16Rik-202,28421,4931406P16Rik-202;4931406P16Rik-201;4931406P16Rik-210;4931406P16Rik-208;4931406P16Rik-203;4931406P16Rik-204,4931406P16Rik;4931406P16Rik;4931406P16Rik;4931406P16Rik;4931406P16Rik;4931406P16Rik,0;0;0;0;28415;20382,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,8,233103,ENSMUSG00000066571,conserved gene and region,7,34285022,34285154,133,*,133,9,0.69924812,0.561444653,0.067669173,0.00000959,CpGisland,TRUE,U10,Tr-S
1367,cg04842607,0.0000361,0.00000597,6.050829408,4.15E-09,gain,yes,-0.0000344,0.0000101,-3.395224225,0.000774987,neg,ns,-0.007421237,0.002969382,-2.499253183,0.0129625,neg,ns,1.887311225,0.000166079,0.000102117,1.626359357,0.104889285,pos,ns,0.765437437,Pdzd2,Pdzd2_Exon,15,12445566,12445615,12445566,12445567,50,-,CGTGAGGTGAGCGCTTTGATCCTCGGCCTCCACTAACCTGAATTCCCAGC,"Exon (Pdzd2-201/Pdzd2, exon 3 of 24)",15,12359711,12592556,232846,2,Pdzd2-201,146941,Pdzd2-201;Pdzd2-208;Pdzd2-206,Pdzd2;Pdzd2;Pdzd2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,5,68070,ENSMUSG00000022197,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
667,cg01050998,-0.00000417,0.000014,-0.297695262,0.766135164,loss,ns,0.0000809,0.0000238,3.394690112,0.000776445,pos,ns,-0.002725224,0.006977506,-0.39057282,0.696381278,neg,ns,0.157152913,0.000214448,0.000239956,0.893699249,0.37217611,pos,ns,0.690024773,Gm49533,Gm49533_Intergenic_downstream,16,7628329,7628378,7628329,7628330,50,+,CGACAGTCCCTTTGGATTTTTGATTGATTACTAGGCAAATTAGATAAGAA,Distal Intergenic,16,7708736,7709066,331,2,Gm49533-201,80688,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
896,cg20627439,0.0000145,0.00000661,2.188192905,0.029401694,gain,ns,0.0000381,0.0000112,3.3928185,0.000781576,pos,ns,0.015619244,0.003291483,4.745351313,0.00000318,pos,ns,5.497225373,-0.000319325,0.000113194,-2.82104726,0.005095488,neg,ns,0.375240054,Rrs1,Rrs1_Exon,1,9545590,9545639,9545590,9545591,50,+,CGCATCACGGTGCACAAGGAGCTGGAGCTGCAGTTTGACCTGGGCAACCT,Promoter (<=1kb),1,9545408,9547455,2048,1,Rrs1-201,182,Adhfe1-203;Adhfe1-201;Adhfe1-202;Adhfe1-204;Adhfe1-205;Rrs1-201,Adhfe1;Adhfe1;Adhfe1;Adhfe1;Adhfe1;Rrs1,-2309;-2416;-2453;-2468;-2480;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,59014,ENSMUSG00000061024,conserved gene and region,1,9545270,9546139,870,*,870,89,0.668965517,0.914545562,0.102298851,1.75E-68,CpGisland,TRUE,U1,Pr-A
930,cg04982951,0.0000475,0.00000457,10.39538146,6.52E-22,gain,yes,-0.0000263,0.00000777,-3.392191992,0.000783301,neg,ns,-0.000363486,0.002275636,-0.159729411,0.873198254,neg,ns,0.058887141,0.0000475,0.0000783,0.60725039,0.544129281,pos,ns,0.100255487,Gata3,Gata3_fiveUTR,2,9878557,9878606,9878605,9878606,50,-,AAGTATCAAGACGGCGCCAGGCAGCTCAGTGTTCGCAGACAGCTGTGGCG,Promoter (<=1kb),2,9857078,9878600,21523,2,Gata3-201,0,4930412O13Rik-201;4930412O13Rik-202;9230102O04Rik-202;9230102O04Rik-201;Gata3-201;Gata3-205;Gata3-206;Gata3-202;Gata3-204;Gata3-203,4930412O13Rik;4930412O13Rik;9230102O04Rik;9230102O04Rik;Gata3;Gata3;Gata3;Gata3;Gata3;Gata3,-2646;-4030;10934;5387;0;0;-3158;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,21,14462,ENSMUSG00000015619,conserved gene but different region,2,9878568,9878714,147,*,147,12,0.639455782,0.804377565,0.081632653,1.97E-08,CpGisland,TRUE,U3,Pr-B
1180,cg25326872,-0.0000124,0.0000179,-0.691701569,0.489642471,loss,ns,0.00010314,0.0000304,3.392128256,0.000783477,pos,ns,0.035467301,0.008907853,3.981576941,0.0000853,pos,ns,4.068836267,-0.000741913,0.00030634,-2.421858893,0.016014764,neg,ns,0.39765746,Gm14512,Gm14512_Intergenic_downstream,X,11998245,11998294,11998293,11998294,50,+,ACCCATAACTCATTAGTGTTGAACTCACGAGGTATAAAGACCAACGCACG,Distal Intergenic,20,11984468,11984697,230,1,Gm14512-201,13777,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,22,22,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10960,cg19451739,0.000000249,0.00000126,0.197753239,0.843367741,gain,ns,0.00000725,0.00000214,3.392102171,0.000783548,pos,ns,0.001881238,0.000625832,3.005980788,0.002863577,pos,ns,2.543091104,-0.0000506,0.0000215,-2.350040456,0.019398124,neg,ns,0.966451389,Tcf7l2,Tcf7l2_Exon,19,55924524,55924573,55924572,55924573,50,-,TTTCAGAACACAGCGAATGTTTCCTAAATCCTTGCCTTTCACTTCCTCCG,"Exon (Tcf7l2-208/Tcf7l2, exon 12 of 12)",19,55741820,55933229,191410,1,Tcf7l2-213,182704,Tcf7l2-213;Tcf7l2-201;Tcf7l2-208;Tcf7l2-211;Tcf7l2-212;Tcf7l2-222;Tcf7l2-215;Tcf7l2-207;Tcf7l2-202;Tcf7l2-209;Tcf7l2-210;Tcf7l2-220;Tcf7l2-203;Tcf7l2-221,Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,88,21416,ENSMUSG00000024985,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19776,cg20462091,-0.00000786,0.00000307,-2.558568296,0.01098533,loss,ns,-0.0000177,0.00000522,-3.391796156,0.000784392,neg,ns,0.001996557,0.00152845,1.306263076,0.192431472,pos,ns,0.715723898,-0.0000782,0.0000526,-1.488650768,0.137595919,neg,ns,0.941666057,Ppp4r3a,Ppp4r3a_Exon,12,101053457,101053506,101053505,101053506,50,-,TTCTTACTTACATCATCATTCTGTTGTGCCTCCTGCATGACAAACTCTCG,"Exon (Ppp4r3a-201/Ppp4r3a, exon 7 of 15)",12,101039409,101083663,44255,2,Ppp4r3a-201,30157,Ppp4r3a-201;Ppp4r3a-205;Ppp4r3a-202;Ppp4r3a-206;Ppp4r3a-207,Ppp4r3a;Ppp4r3a;Ppp4r3a;Ppp4r3a;Ppp4r3a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,10,68734,ENSMUSG00000041846,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12390,cg03123810,0.0000348,0.00000946,3.682479,0.000272418,gain,ns,0.0000545,0.0000161,3.391794103,0.000784398,pos,ns,0.01578103,0.004709002,3.351247244,0.000904031,pos,ns,3.043816815,-0.000333593,0.000161942,-2.059949064,0.04023789,neg,ns,0.209974934,Ctnna3,Ctnna3_fiveUTR,10,64089813,64089862,64089813,64089814,50,+,CGCTGACACCCAGGAAGAAAAATTGGACCCCTTGGGAGATGGACCGATTT,5' UTR,10,63430098,65002965,1572868,1,Ctnna3-203,659715,Ctnna3-203;Ctnna3-202;Ctnna3-201;Lrrtm3-201;Lrrtm3-202;Lrrtm3-204;Lrrtm3-203,Ctnna3;Ctnna3;Ctnna3;Lrrtm3;Lrrtm3;Lrrtm3;Lrrtm3,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,11,216033,ENSMUSG00000060843,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
24544,cg13291081,0.0000161,0.00000465,3.465428899,0.000604038,gain,ns,-0.0000268,0.0000079,-3.391534386,0.000785115,neg,ns,-0.000627534,0.002313672,-0.2712287,0.786395659,neg,ns,0.104358892,-0.000128024,0.0000796,-1.609007802,0.108632494,neg,ns,0.891082041,Taok2,Taok2_Exon,7,126871400,126871449,126871448,126871449,50,-,ACTTTGAGGCTCTTGGGCTGCTGGCGAACCTGGGCCGCATGCTTCTGCCG,Promoter (<=1kb),7,126865678,126871641,5964,2,Taok2-205,192,Taok2-205;Taok2-201;Taok2-203;Taok2-202,Taok2;Taok2;Taok2;Taok2,0;0;-4144;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,11,381921,ENSMUSG00000059981,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20769,cg04685888,0.00000461,0.0000143,0.322166566,0.747543661,gain,ns,0.0000825,0.0000243,3.391215867,0.000785995,pos,ns,0.020594807,0.00712497,2.89051136,0.004117653,pos,ns,2.385350285,-0.000081,0.000245027,-0.330548243,0.741209037,neg,ns,0.793840406,Gm5671,Gm5671_Intergenic_downstream,14,105085073,105085122,105085121,105085122,50,-,TTCATTTGTGTGCTCAAATTTGGTTATCTGTCCTCTTTTATGCAAATGCG,Distal Intergenic,14,105043450,105044354,905,1,Gm5671-201,41672,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,12,435420,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15564,cg04720265,0.000000576,0.0000133,0.043210338,0.965561683,gain,ns,0.0000767,0.0000226,3.390343241,0.000788411,pos,ns,0.022986848,0.006631125,3.466507906,0.000601709,pos,ns,3.22061332,-0.000618048,0.000228044,-2.710216646,0.007098291,neg,ns,0.592314278,Adgrl3,Adgrl3_threeUTR,5,81794883,81794932,81794931,81794932,50,-,CGAAGATGTTTACTACAAAAGCATGCCAAACCTAGGCTCCAGAAACCACG,3' UTR,5,81020571,81796634,776064,1,Adgrl3-223,774312,Adgrl3-223;Adgrl3-203;Adgrl3-211;Adgrl3-217;Adgrl3-232;Adgrl3-207;Adgrl3-205;Adgrl3-206;Adgrl3-208;Adgrl3-212;Adgrl3-213;Adgrl3-214;Adgrl3-215;Adgrl3-216;Adgrl3-209;Adgrl3-218;Adgrl3-219;Adgrl3-204;Adgrl3-210;Adgrl3-201;Adgrl3-202;Adgrl3-220;Adgrl3-229;Adgrl3-235,Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,13,319387,ENSMUSG00000037605,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11938,cg15248086,-0.0000087,0.00000826,-1.053211929,0.293064091,loss,ns,0.0000476,0.000014,3.390214099,0.000788769,pos,ns,-0.002625028,0.004112015,-0.638380128,0.523697579,neg,ns,0.280919434,0.000079,0.000141412,0.558738213,0.576743765,pos,ns,0.771498298,Gm47241,Gm47241_Promoter,9,61756891,61756940,61756891,61756892,50,+,CGTAAATTACATGCTGACACCTTTAATTTGTGCAAAGTATGCCTGGCTGC,Promoter (6-7kb),9,61763084,61763442,359,1,Gm47241-201,-6144,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,6,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21303,cg04525271,0.0000226,0.00000461,4.907233047,0.0000015,gain,yes,-0.0000265,0.00000783,-3.388986662,0.00079218,neg,ns,0.001994692,0.002293785,0.869607401,0.385187804,pos,ns,0.414327473,-0.00000121,0.0000789,-0.015394478,0.987727372,neg,ns,0.848204956,Mapkapk3,Mapkapk3_threeUTR,9,107256253,107256302,107256253,107256254,50,-,CGGTTGTTAGAGGTCTTCAGGTCCTTGATCTTCACCTGGTCGTAGTCTAC,3' UTR,9,107254927,107289877,34951,2,Mapkapk3-201,33575,Mapkapk3-201;Mapkapk3-206;Mapkapk3-202;Mapkapk3-208;Mapkapk3-205;Mapkapk3-207,Mapkapk3;Mapkapk3;Mapkapk3;Mapkapk3;Mapkapk3;Mapkapk3,0;0;0;0;5634;33477,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,2,102626,ENSMUSG00000032577,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17723,cg15987146,-0.000000882,0.00000837,-0.105356219,0.916161293,loss,ns,-0.0000482,0.0000142,-3.388817588,0.000792651,neg,ns,0.003084363,0.004166257,0.740319806,0.45966629,pos,ns,0.337557344,-0.000244737,0.000143277,-1.708135368,0.088612279,neg,ns,0.893368933,Lrp4,Lrp4_Exon,2,91485747,91485796,91485795,91485796,50,-,TGATCAGGTCTTGACAAGTTCCTGCTTTTTGCCCGAAGGATGGACATCCG,"Exon (Lrp4-201/Lrp4, exon 17 of 38)",2,91457511,91513779,56269,1,Lrp4-201,28236,Lrp4-201;Lrp4-202,Lrp4;Lrp4,0;9491,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,7,228357,ENSMUSG00000027253,conserved gene and region,2,91485740,91485897,158,*,158,11,0.588607595,0.803885291,0.069620253,0.000000471,CpGisland,TRUE,NA,NRS
10381,cg02052767,0.00000143,0.00000149,0.963994887,0.335799863,gain,ns,0.00000855,0.00000252,3.387082155,0.000797501,pos,ns,0.00234283,0.000739469,3.168260267,0.001686446,pos,ns,2.773027677,-0.0000471,0.0000254,-1.851918038,0.064988233,neg,ns,0.046878503,Creb5,Creb5_fiveUTR,6,53287277,53287326,53287325,53287326,50,-,ATGTAATGCACTCTAAATAGAATGTATTGTAATCTTTGCTCAGTCCAACG,Promoter (<=1kb),6,53287286,53394677,107392,1,Creb5-213,0,Creb5-214;Creb5-203;Creb5-213;Creb5-208;Creb5-211;Creb5-210;Creb5-209;Creb5-204;Creb5-207;Creb5-215;Creb5-202,Creb5;Creb5;Creb5;Creb5;Creb5;Creb5;Creb5;Creb5;Creb5;Creb5;Creb5,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,7,12,231991,ENSMUSG00000053007,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
10081,cg14171314,0.000224144,0.0000164,13.6629352,1.37E-33,gain,yes,-0.0000944,0.0000279,-3.386961405,0.000797839,neg,ns,0.028187364,0.008165057,3.45219438,0.00063329,pos,ns,3.198397093,-0.000928004,0.000280796,-3.304909305,0.001061464,neg,ns,0.25459618,Gm28308,Gm28308_Exon,6,52164522,52164571,52164522,52164523,50,-,CGTCGAGGTCTTGATTGATGAACTTTGAAATGTATCAGCGACAGGGGGAA,"Exon (Hoxa2-201/Hoxa2, exon 1 of 2)",6,52163359,52213339,49981,2,Gm28308-201,48768,Gm28308-201;Hoxa2-201;Hoxa3-201,Gm28308;Hoxa2;Hoxa3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,30,103,,NA,mapped to different genes,6,52164510,52164668,159,*,159,10,0.496855346,1.023166023,0.062893082,0.00000467,CpGisland,TRUE,U3,Pr-B
23502,cg02251472,-0.0000732,0.0000177,-4.125611042,0.0000476,loss,ns,0.000102044,0.0000301,3.386516016,0.000799089,pos,ns,0.012046566,0.008827761,1.364623088,0.173361255,pos,ns,0.761047958,-0.000288544,0.000303586,-0.950451416,0.342623333,neg,ns,0.689529287,Gm18441,Gm18441_Intergenic_downstream,12,118720409,118720458,118720457,118720458,50,+,GCAATCTGATGCAATTTGCTTGCAATTTTGTCTGCTTTCAGTAGCACTCG,Distal Intergenic,12,118732439,118733055,617,2,Gm18441-201,12597,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,9,100417195,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24625,cg05537515,0.0000248,0.0000141,1.768218691,0.078007856,gain,ns,-0.0000808,0.0000239,-3.386310556,0.000799666,neg,ns,0.023767307,0.006993788,3.398345091,0.000766515,pos,ns,3.115479283,-0.001659756,0.000240516,-6.900820379,2.92E-11,neg,yes,0.368074186,Mbd6,Mbd6_threeUTR,10,127282822,127282871,127282870,127282871,50,-,AGGTATGGCTGCTATGGGGCCAGTTTCCTCCTCTTGTTTTTGGCAGGACG,Promoter (<=1kb),10,127281956,127283668,1713,2,Mbd6-204,797,Dctn2-201;Dctn2-205;Dctn2-203;Dctn2-204;Mbd6-204;Mbd6-203;Mbd6-201;Mbd6-202;Mbd6-205;Mbd6-207;Mbd6-206,Dctn2;Dctn2;Dctn2;Dctn2;Mbd6;Mbd6;Mbd6;Mbd6;Mbd6;Mbd6;Mbd6,0;5882;5541;5416;0;0;0;0;0;1500;0,TRUE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,6,110962,ENSMUSG00000025409,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18278,cg14173470,-0.00000205,0.0000024,-0.853870881,0.393835857,loss,ns,-0.0000138,0.00000408,-3.385837508,0.000800996,neg,ns,-0.001831529,0.001196295,-1.531001214,0.126788893,neg,ns,0.89691879,-0.0000365,0.0000411,-0.887521257,0.375486383,neg,ns,0.914660803,Dyrk1a,Dyrk1a_Exon,16,94673367,94673416,94673367,94673368,50,+,CGGTCTCCAGAGGTGCTACTGGGAATGCCTTATGACCTTGCCATTGATAT,"Exon (Dyrk1a-202/Dyrk1a, exon 8 of 12)",16,94570010,94695067,125058,1,Dyrk1a-202,103357,Dyrk1a-202;Dyrk1a-203;Dyrk1a-206;Dyrk1a-201;Dyrk1a-204,Dyrk1a;Dyrk1a;Dyrk1a;Dyrk1a;Dyrk1a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,14,13548,ENSMUSG00000022897,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27562,cg16218119,0.0000342,0.0000145,2.365698529,0.018611178,gain,ns,0.0000832,0.0000246,3.385428163,0.000802148,pos,ns,0.027222508,0.007202997,3.779330934,0.000188575,pos,ns,3.724516868,-0.000538623,0.00024771,-2.174403826,0.030430844,neg,ns,0.724801312,Mid1,Mid1_Exon,X,169927568,169927617,169927616,169927617,50,-,TGTGTGACCGATGACCAGTTAATCTGTGCCTTGTGTAAACTGGTTGGGCG,"Exon (Mid1-204/Mid1, exon 2 of 10)",20,169685199,169990795,305597,1,Mid1-206,242369,Mid1-206;Mid1-204;Mid1-201;Mid1-205;Mid1-202;Mid1-214;Mid1-215;Mid1-211,Mid1;Mid1;Mid1;Mid1;Mid1;Mid1;Mid1;Mid1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,8,17318,ENSMUSG00000035299,conserved gene and region,X,169927461,169927683,223,*,223,13,0.533632287,0.835928489,0.058295964,0.000000236,CpGisland,TRUE,NA,NRS
20530,cg09009538,0.00000997,0.00000661,1.507257253,0.13276309,gain,ns,-0.000038,0.0000112,-3.38507466,0.000803145,neg,ns,0.013075517,0.003291283,3.972772463,0.0000884,pos,ns,4.053546458,-0.00037874,0.000113187,-3.346146138,0.000920231,neg,ns,0.60166813,Gpr84,Gpr84_Intergenic_downstream,15,103300280,103300329,103300328,103300329,50,-,CCAGCGCTGCTCCAGAAGGTCAGGACGGTGGTGTAAATAACCTCTTCTCG,Downstream (<1kb),15,103308235,103310612,2378,2,Gpr84-201,10332,Copz1-202;Copz1-201;Copz1-204,Copz1;Copz1;Copz1,0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,3,5,80910,ENSMUSG00000063234,mapped to different genes,15,103300161,103300329,169,*,169,14,0.621301775,0.887471868,0.082840237,7.36E-10,CpGisland,TRUE,U11,Tr-P
21696,cg20569293,-0.00000674,0.00000177,-3.803205988,0.000172024,loss,ns,0.0000102,0.00000301,3.38461888,0.000804431,pos,ns,0.000433016,0.000881896,0.491005515,0.623769955,pos,ns,0.204975548,0.0000102,0.0000303,0.337664083,0.735844874,pos,ns,0.958605663,Zfhx3,Zfhx3_Intron,8,108890386,108890435,108890434,108890435,50,+,CAGGAAAGCCAGGCTAATTGTAAATCAATGGGTCTTAAAATGCAGCATCG,"Intron (Zfhx3-204/Zfhx3, intron 10 of 15)",8,107942644,108961630,1018987,1,Zfhx3-204,947742,Zfhx3-204;Zfhx3-201,Zfhx3;Zfhx3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,114,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18169,cg25529610,-0.00000391,0.00000505,-0.773623536,0.439742986,loss,ns,-0.000029,0.00000858,-3.382651509,0.000810007,neg,ns,-0.007330236,0.00251429,-2.915429614,0.003810861,neg,ns,2.418976857,0.0000888,0.0000865,1.026701119,0.305361669,pos,ns,0.885019567,Luc7l3,Luc7l3_threeUTR,11,94292499,94292548,94292547,94292548,50,-,AATAATTCATAAACCCTACACTTCCATCAATCCAATGCTACTGGCTCTCG,3' UTR,11,94287890,94321958,34069,2,Luc7l3-209,29410,Luc7l3-209;Luc7l3-205;Luc7l3-203;Luc7l3-201;Luc7l3-202;Luc7l3-207;Luc7l3-204;Luc7l3-210;Luc7l3-206;Luc7l3-208,Luc7l3;Luc7l3;Luc7l3;Luc7l3;Luc7l3;Luc7l3;Luc7l3;Luc7l3;Luc7l3;Luc7l3,0;0;0;0;0;0;0;5670;6483;7683,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,7,7,67684,ENSMUSG00000020863,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
929,cg06230736,0.000101324,0.00000542,18.70825815,8.40E-53,gain,yes,-0.0000311,0.0000092,-3.380668007,0.000815665,neg,ns,0.00155709,0.002695598,0.577641792,0.563925296,pos,ns,0.248778424,0.000139555,0.0000927,1.505425239,0.133232993,pos,ns,0.097778854,Gata3,Gata3_fiveUTR,2,9878542,9878591,9878590,9878591,50,-,ATGCATTCTTTCTGAAAGTATCAAGACGGCGCCAGGCAGCTCAGTGTTCG,Promoter (<=1kb),2,9857078,9878600,21523,2,Gata3-201,9,4930412O13Rik-201;4930412O13Rik-202;9230102O04Rik-202;9230102O04Rik-201;Gata3-201;Gata3-205;Gata3-206;Gata3-202;Gata3-204;Gata3-203,4930412O13Rik;4930412O13Rik;9230102O04Rik;9230102O04Rik;Gata3;Gata3;Gata3;Gata3;Gata3;Gata3,-2661;-4045;10949;5402;0;0;-3143;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,21,14462,ENSMUSG00000015619,conserved gene and region,2,9878568,9878714,147,*,147,12,0.639455782,0.804377565,0.081632653,1.97E-08,CpGisland,TRUE,U3,Pr-B
22739,cg03158071,0.0000246,0.0000126,1.948748581,0.052227347,gain,ns,-0.0000724,0.0000214,-3.378694613,0.00082133,neg,ns,-0.005378349,0.006277423,-0.8567765,0.392230234,neg,ns,0.406458933,-0.000186018,0.00021588,-0.861672156,0.389533972,neg,ns,0.742893741,Meis2,Meis2_Intron,2,115867395,115867444,115867395,115867396,50,-,CGAGGACACAGAGGAGAAAGAAGAAAAGATATACCAAACAATCAGCAATT,"Intron (Meis2-201/Meis2, intron 10 of 11)",2,115863064,116065047,201984,2,Meis2-201,197603,Meis2-201;Meis2-203;Meis2-205;Meis2-206;Meis2-204;Meis2-202;Meis2-208;Meis2-219;Meis2-216;Meis2-218;Meis2-214;Meis2-207;Meis2-215,Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,45,97,17536,ENSMUSG00000027210,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4479,cg25322213,0.00000243,0.00000694,0.349982838,0.726589237,gain,ns,-0.0000398,0.0000118,-3.37790418,0.00082361,neg,ns,0.00858737,0.003453902,2.486281126,0.013434913,pos,ns,1.871765155,0.000100425,0.000118779,0.845476497,0.398496942,pos,ns,0.758505904,Srsf3,Srsf3_threeUTR,17,29039808,29039857,29039856,29039857,50,-,AATCCAACGCAACATCTGGCAAAACCTTTTCAGCAAATTCTTCCTGGCCG,3' UTR,17,29032628,29043373,10746,1,Srsf3-202,7180,Srsf3-202;Srsf3-201;Srsf3-204;Srsf3-210;Srsf3-209;Srsf3-208;Srsf3-203;Srsf3-206;Srsf3-205;Srsf3-207,Srsf3;Srsf3;Srsf3;Srsf3;Srsf3;Srsf3;Srsf3;Srsf3;Srsf3;Srsf3,0;0;0;7135;7119;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,7,20383,ENSMUSG00000071172,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14775,cg21460254,-0.000016,0.00000367,-4.351388306,0.0000184,loss,ns,0.000021,0.00000623,3.377756448,0.000824036,pos,ns,-0.0000488,0.001825188,-0.026741621,0.978683023,neg,ns,0.009357945,0.000054,0.0000628,0.86018616,0.390351178,pos,ns,0.931307309,Gm11146,Gm11146_Exon,16,77599711,77599760,77599759,77599760,50,-,AGTTAACTGTACAACCTTCTAGCTTTCCTTGGAGCACACTTGAGCCGTCG,"Exon (Mirlet7c-1-201/Mirlet7c-1-201, exon 1 of 1)",16,77588578,77602094,13517,2,Gm11146-201,2334,Gm11146-201,Gm11146,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,21,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3020,cg00304877,0.000000373,0.00000375,0.099419326,0.920869598,gain,ns,-0.0000215,0.00000637,-3.377730196,0.000824112,neg,ns,-0.002857218,0.001866424,-1.53085126,0.126825952,neg,ns,0.89679187,0.0000603,0.0000642,0.940027828,0.34793517,pos,ns,0.954751489,Lrmda,Lrmda_Intron,14,22413039,22413088,22413087,22413088,50,+,AGCTTAATTTGTATTTAATCTCCTCTTTTGTTTCTACATTATTGCCTTCG,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,393327,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206;Lrmda-202,Lrmda;Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9038,cg16663507,-0.00000519,0.00000966,-0.53760849,0.591233076,loss,ns,0.0000554,0.0000164,3.377719769,0.000824142,pos,ns,0.009168575,0.004807477,1.90714893,0.057425423,pos,ns,1.240895797,-0.0002454,0.000165329,-1.484314734,0.138741504,neg,ns,0.817029146,Nova1,Nova1_threeUTR,12,46696361,46696410,46696409,46696410,50,+,ATAAATATATAATACAGGACTTGCTAACCTCTGTTAACCATCTGAATGCG,3' UTR,12,46694517,46818929,124413,2,Nova1-201,122519,Nova1-201;Nova1-204,Nova1;Nova1,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,10,24,664883,ENSMUSG00000021047,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27924,cg12169122,0.0000188,0.0000107,1.752618873,0.080656018,gain,ns,0.0000615,0.0000182,3.376664178,0.000827198,pos,ns,-0.002801753,0.005335815,-0.525084302,0.599899913,neg,ns,0.221921201,0.000479657,0.000183498,2.613959618,0.009386864,pos,ns,0.752114401,Prox1,Prox1_Intergenic_upstream,1,190375273,190375322,190375273,190375274,50,-,CGCGCTGCGTTTCAAGTGTCAATCAAAAAGGAAGGACGCAGCTTAGGTCC,Distal Intergenic,1,190118035,190170714,52680,2,Prox1-202,-204608,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,13,59,19130,ENSMUSG00000010175,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13276,cg01576619,0.0000868,0.00001,8.662231869,2.60E-16,gain,yes,-0.0000575,0.000017,-3.376558273,0.000827505,neg,ns,-0.001830754,0.004989632,-0.366911675,0.713935227,neg,ns,0.146341188,-0.00023539,0.000171593,-1.371794435,0.171119398,neg,ns,0.610676975,Ank3,Ank3_Exon,10,69988715,69988764,69988763,69988764,50,-,CTTATCCCGGGGAGATATTAACCTAAAAGATTTTCTGCCAGAAAAACACG,"Exon (Ank3-244/Ank3, exon 6 of 9)",10,69398996,70023957,624962,1,Ank3-247,589719,Ank3-247;Ank3-231;Ank3-210;Ank3-239;Ank3-240;Ank3-220;Ank3-201;Ank3-202;Ank3-203;Ank3-204;Ank3-206;Ank3-233;Ank3-221;Ank3-232;Ank3-228;Ank3-205;Ank3-215;Ank3-237;Ank3-242;Ank3-208;Ank3-227;Ank3-207;Ank3-230;Ank3-219;Ank3-244;Ank3-238;Ank3-213;Ank3-224;Ank3-236;Ank3-225;Ank3-243,Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,13,11735,ENSMUSG00000069601,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U14,Hc-H
2517,cg16839842,-0.0000141,0.0000123,-1.143665583,0.253644722,loss,ns,0.0000707,0.0000209,3.376470898,0.000827758,pos,ns,0.005114723,0.006131392,0.834186311,0.40481834,pos,ns,0.39273982,0.000188559,0.000210858,0.894244229,0.371884975,pos,ns,0.793245618,Pkhd1,Pkhd1_Intron,1,20180371,20180420,20180419,20180420,50,-,CTAGCTCACGTTTCATTTCACAGGTCATTATTGCATTAAGAAGTAAATCG,"Intron (Pkhd1-201/Pkhd1, intron 60 of 66)",1,20057779,20618064,560286,2,Pkhd1-201,437644,Pkhd1-201,Pkhd1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,25,241035,ENSMUSG00000043760,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19032,cg11186325,-0.0000247,0.0000193,-1.279188719,0.201787265,loss,ns,-0.000110576,0.0000328,-3.375662102,0.000830108,neg,ns,-0.015904664,0.009596639,-1.657315991,0.098467227,neg,ns,1.006708293,0.000502081,0.000330028,1.521328838,0.129196666,pos,ns,0.816998773,Cdk12,Cdk12_Exon,11,98249774,98249823,98249774,98249775,50,+,CGATCTTTCCAGCGCCCCCCAGGAGTTGAACCCAGCCGTGACAGCCGCCT,"Exon (Cdk12-203/Cdk12, exon 14 of 14)",11,98203059,98251564,48506,1,Cdk12-203,46715,Cdk12-203;Cdk12-201;Cdk12-202;Cdk12-206,Cdk12;Cdk12;Cdk12;Cdk12,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,25,69131,ENSMUSG00000003119,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25511,cg23414644,0.0000993,0.00000759,13.07686671,2.02E-31,gain,yes,-0.0000435,0.0000129,-3.375130295,0.000831656,neg,ns,-0.015255891,0.003779297,-4.036701174,0.0000684,neg,ns,4.165183191,0.00054284,0.00012997,4.176666084,0.0000385,pos,ns,0.736007125,Mgmt,Mgmt_Intron,7,137040911,137040960,137040911,137040912,50,+,CGGCTGTTATCTGTTTGAGTTTTTGCAGCCAGGTCATCTCAGGGGACTGG,"Intron (Mgmt-201/Mgmt, intron 2 of 4)",7,136894614,137130266,235653,1,Mgmt-201,146297,Mgmt-201,Mgmt,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,16,17314,ENSMUSG00000054612,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27576,cg12626758,-0.0000208,0.0000102,-2.028032628,0.043411801,loss,ns,0.0000587,0.0000174,3.374873086,0.000832406,pos,ns,0.020228387,0.005097798,3.968063511,0.0000901,pos,ns,4.045380101,-0.000533004,0.000175313,-3.040303872,0.002564949,neg,ns,0.830905346,Tshz2,Tshz2_Intron,2,170028739,170028788,170028739,170028740,50,-,CGTGATTTTTGTGGGGCACCAATGATTAAACTTGTCACAGGGCTTGATTG,"Intron (Tshz2-203/Tshz2, intron 1 of 1)",2,169884893,170071816,186924,1,Tshz2-203,143846,Tshz2-203;Tshz2-205,Tshz2;Tshz2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,21,30,228911,ENSMUSG00000047907,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
791,cg13320956,-0.00000258,0.00000367,-0.70129106,0.483647492,loss,ns,0.0000211,0.00000624,3.37435336,0.000833923,pos,ns,0.004435411,0.001828255,2.426034872,0.015835142,pos,ns,1.800378036,-0.000147376,0.0000629,-2.344009959,0.019708911,neg,ns,0.057220013,Stx5a,Stx5a_Exon,19,8742293,8742342,8742293,8742294,50,-,CGGGTCTAAGAACACGGATCAGGGTGTCTACCTGGGTCTCTCAAAGACAC,Promoter (<=1kb),19,8741413,8755586,14174,1,Stx5a-218,880,1700092M07Rik-201;1700092M07Rik-202;Stx5a-218;Stx5a-213;Stx5a-203;Stx5a-219;Stx5a-205;Stx5a-201;Stx5a-209;Stx5a-212;Stx5a-202;Stx5a-206;Stx5a-208;Stx5a-211;Stx5a-207;Wdr74-202;Wdr74-201;Wdr74-203;Wdr74-204;Wdr74-207;Wdr74-205;Wdr74-206;Wdr74-208,1700092M07Rik;1700092M07Rik;Stx5a;Stx5a;Stx5a;Stx5a;Stx5a;Stx5a;Stx5a;Stx5a;Stx5a;Stx5a;Stx5a;Stx5a;Stx5a;Wdr74;Wdr74;Wdr74;Wdr74;Wdr74;Wdr74;Wdr74;Wdr74,1575;1531;0;0;0;0;0;0;0;0;0;0;0;0;-518;0;0;0;6412;0;0;0;2625,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,56389,ENSMUSG00000010110,conserved gene and region,19,8742266,8742308,43,*,43,7,0.558139535,2.104895105,0.162790698,0.000000419,CpGisland,TRUE,U1,Pr-A
25973,cg22101208,-0.00000476,0.0000252,-0.188429662,0.850663139,loss,ns,-0.000144682,0.0000429,-3.37353871,0.000836306,neg,ns,-0.026620433,0.012564506,-2.118701025,0.034910847,neg,ns,1.457039612,0.000578086,0.000432092,1.337876119,0.18191742,pos,ns,0.812138092,Rbmx2-ps,Rbmx2-ps_Intergenic_downstream,2,142599474,142599523,142599522,142599523,50,+,TTGTTTGTGGAACTTTTATAGCTAATTGACATTTTTTCAGTGCTCCCCCG,Distal Intergenic,2,142576928,142577857,930,1,Rbmx2-ps-201,22546,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,668914,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18127,cg17398634,0.0000363,0.00000753,4.824276273,0.00000221,gain,ns,-0.0000432,0.0000128,-3.372406588,0.000839628,neg,ns,-0.003144004,0.003748823,-0.838664379,0.402303882,neg,ns,0.395445776,0.0000918,0.000128922,0.712271465,0.47683241,pos,ns,0.873967684,Spag9,Spag9_Exon,11,94044366,94044415,94044414,94044415,50,-,TGAGTCCTGGATGCATGCTGCTGTTTGTGTTTGGCTTTGTTGGCGGGGCG,"Exon (Spag9-207/Spag9, exon 1 of 16)",11,93996103,94050649,54547,1,Spag9-208,48263,Spag9-209;Spag9-208;Spag9-202;Spag9-212;Spag9-207;Spag9-206;Spag9-203;Spag9-204;Spag9-205;Spag9-201,Spag9;Spag9;Spag9;Spag9;Spag9;Spag9;Spag9;Spag9;Spag9;Spag9,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,6,70834,ENSMUSG00000020859,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
11137,cg13848598,0.000159675,0.00000787,20.27960129,8.58E-59,gain,yes,-0.0000451,0.0000134,-3.371915823,0.000841072,neg,ns,0.009301039,0.003918816,2.373431051,0.018233012,pos,ns,1.739141579,0.0000906,0.000134768,0.672282479,0.501904637,pos,ns,0.17929797,Adrb1,Adrb1_Exon,19,56723058,56723107,56723058,56723059,50,-,CGTAGTCTCCTTCTACGTGCCCCTGTGCATCATGGCCTTCGTGTACCTGC,Promoter (<=1kb),19,56722199,56725150,2952,1,Adrb1-201,859,Adrb1-201;Adrb1-202,Adrb1;Adrb1,0;-756,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,11554,ENSMUSG00000035283,conserved gene and region,19,56721990,56723878,1889,*,1889,218,0.710428798,0.916980082,0.115404976,2.37E-179,CpGisland,TRUE,U3,Pr-B
15128,cg05265858,-0.0000335,0.0000145,-2.31259181,0.021399761,loss,ns,0.000083,0.0000246,3.371848795,0.00084127,pos,ns,0.012354718,0.007214048,1.712591551,0.087787643,pos,ns,1.056566611,-0.000309675,0.000248091,-1.248233635,0.212887442,neg,ns,0.362511898,Gm48470,Gm48470_Intergenic_downstream,13,79278016,79278065,79278064,79278065,50,-,GTCGGCAAATACAAATTTTTCACTCAGCAGGCATAATCAGAGCTAACTCG,Distal Intergenic,13,79441143,79441407,265,2,Gm48470-201,163391,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,20,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12389,cg15010148,-0.0000447,0.0000325,-1.374528596,0.170270431,loss,ns,0.000186164,0.0000552,3.371483011,0.000842348,pos,ns,0.049105881,0.016176785,3.035577282,0.0026043,pos,ns,2.584309069,-0.001341574,0.000556318,-2.411521847,0.016467157,neg,ns,0.398057228,Ctnna3,Ctnna3_Exon,10,64088926,64088975,64088926,64088927,50,-,CGAAACTGTTCAGATCCCAGAGAATGCAGCTGATTATAGGACAGATCCAA,"Exon (Lrrtm3-201/Lrrtm3, exon 2 of 3)",10,63430098,65002965,1572868,1,Ctnna3-203,658828,Ctnna3-203;Ctnna3-202;Ctnna3-201;Lrrtm3-201;Lrrtm3-202;Lrrtm3-204;Lrrtm3-203,Ctnna3;Ctnna3;Ctnna3;Lrrtm3;Lrrtm3;Lrrtm3;Lrrtm3,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,11,216033,ENSMUSG00000060843,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
11505,cg06433000,0.00000833,0.00000432,1.926290963,0.054982171,gain,ns,-0.0000248,0.00000734,-3.370398723,0.000845551,neg,ns,0.000431526,0.002151767,0.200544685,0.841186118,pos,ns,0.075107903,-0.000110733,0.000074,-1.496409481,0.135564364,neg,ns,0.90064142,Nptn,Nptn_Exon,9,58618865,58618914,58618913,58618914,50,+,GAGTGTGCTGAGAATAACCCGGCTCACCTTGGAGGACTCTGGGACTTACG,"Exon (Nptn-212/Nptn, exon 2 of 8)",9,58582240,58651318,69079,1,Nptn-212,36625,Nptn-212;Nptn-201;Nptn-213;Nptn-206;Nptn-203;Nptn-202;Nptn-211;Nptn-207;Nptn-204,Nptn;Nptn;Nptn;Nptn;Nptn;Nptn;Nptn;Nptn;Nptn,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,20,22,20320,ENSMUSG00000032336,conserved gene and region,9,58618678,58618932,255,*,255,20,0.6,0.879917184,0.078431373,1.96E-13,CpGisland,TRUE,NA,NRS
26978,cg00247864,0.0000336,0.00000637,5.272110637,0.000000253,gain,yes,-0.0000365,0.0000108,-3.370229515,0.000846052,neg,ns,-0.009285887,0.003170572,-2.928773779,0.00365529,neg,ns,2.437078178,0.000112949,0.000109036,1.035887658,0.301061926,pos,ns,0.65522106,Acbd6,Acbd6_Intron,1,155681230,155681279,155681278,155681279,50,-,TATCATTGCATCTGTGTCTCCCAGGGGAAATCAAGGCTTTTCCTTGCACG,"Intron (Acbd6-201/Acbd6, intron 7 of 7)",1,155558122,155691330,133209,1,Acbd6-201,123108,Acbd6-201;Acbd6-206,Acbd6;Acbd6,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,7,72482,ENSMUSG00000033701,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8661,cg20167583,0.0000206,0.00000469,4.385352208,0.0000159,gain,ns,-0.0000269,0.00000798,-3.37007136,0.00084652,neg,ns,-0.006104089,0.002336715,-2.612252006,0.009432846,neg,ns,2.025357257,0.000289673,0.0000804,3.604721772,0.000363973,pos,ns,0.882719389,Btrc,Btrc_Intron,19,45494135,45494184,45494135,45494136,50,-,CGGTAATTAACTAAATGAGAAAGTTAAATCTTACTTGAGAGCTGGGAGAG,"Intron (Btrc-204/Btrc, intron 1 of 2)",19,45363734,45507736,144003,1,Btrc-204,130401,Btrc-204;Btrc-201;Btrc-210;Btrc-202;Btrc-203;Btrc-209,Btrc;Btrc;Btrc;Btrc;Btrc;Btrc,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,63,98,12234,ENSMUSG00000025217,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23383,cg22993731,-0.0000375,0.00000702,-5.346113449,0.000000175,loss,yes,0.0000402,0.0000119,3.368377588,0.000851552,pos,ns,-0.002314035,0.003493109,-0.662457177,0.50817047,neg,ns,0.293990576,0.0000459,0.000120128,0.382155406,0.702607944,pos,ns,0.552983147,Cmc1,Cmc1_Intergenic_upstream,9,118227874,118227923,118227874,118227875,50,+,CGAGAAATGAGCACAGACTGCGGCCCAGTGGCAGCAGTCACTTGGAAAAT,Distal Intergenic,9,118064522,118150177,85656,2,Cmc1-201,-77697,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,3,67899,ENSMUSG00000039163,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22749,cg10688581,-0.00000761,0.00000382,-1.992153906,0.047231026,loss,ns,0.0000218,0.00000649,3.366198489,0.000858066,pos,ns,0.005121944,0.00190069,2.694780876,0.007427557,pos,ns,2.129154035,-0.000100714,0.0000654,-1.54080775,0.1243837,neg,ns,0.933225394,Meis2,Meis2_Intron,2,115905164,115905213,115905164,115905165,50,+,CGTAAGTAGATTTTACACCACATTAGAGTTGTCCAATTTCTCATGTTTAA,"Intron (Meis2-201/Meis2, intron 9 of 11)",2,115863064,116065047,201984,2,Meis2-201,159834,Meis2-201;Meis2-203;Meis2-205;Meis2-206;Meis2-204;Meis2-202;Meis2-216,Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,45,97,17536,ENSMUSG00000027210,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6838,cg14509153,-0.000021,0.00000995,-2.107333116,0.035891603,loss,ns,-0.0000569,0.0000169,-3.366089168,0.000858394,neg,ns,0.012395984,0.004954416,2.502007338,0.012864121,pos,ns,1.890619868,-0.000771894,0.000170382,-4.530376821,0.00000841,neg,ns,0.157225645,Nr5a1,Nr5a1_Promoter,2,38718830,38718879,38718878,38718879,50,+,TCAGATCCGATGCCAATGTCAGAGAAGTCCATAGTGCTGGGTCAAGGCCG,Promoter (4-5kb),2,38692660,38714542,21883,2,Nr5a1-201,-4288,Nr5a1-201;Nr6a1-202;Nr6a1-210;Nr6a1-201,Nr5a1;Nr6a1;Nr6a1;Nr6a1,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,3,7,26423,ENSMUSG00000026751,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
27625,cg02803284,0.0000476,0.0000122,3.898775493,0.000118544,gain,ns,0.0000698,0.0000207,3.365750745,0.000859411,pos,ns,0.027307127,0.006071844,4.497336578,0.00000974,pos,ns,5.011536028,-0.000235808,0.00020881,-1.129292841,0.259647417,neg,ns,0.139722565,Vsig8,Vsig8_Exon,1,172562142,172562191,172562190,172562191,50,-,TGGCTAGTGAGATCAGGTAAAACCTGATGCATGCTGCATGCTGCTGTGCG,"Exon (Vsig8-201/Vsig8, exon 6 of 7)",1,172555938,172563717,7780,1,Vsig8-201,6204,Vsig8-201;Vsig8-202,Vsig8;Vsig8,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,240916,ENSMUSG00000049598,mapped to different genes,1,172562190,172562346,157,*,157,12,0.668789809,0.724615385,0.076433121,4.16E-08,CpGisland,TRUE,NA,NRS
7637,cg12515976,0.000285763,0.0000273,10.46255778,3.86E-22,gain,yes,-0.000156123,0.0000464,-3.364648368,0.000862729,neg,ns,0.12682207,0.013593941,9.329308688,2.10E-18,pos,yes,17.67692022,-0.003644856,0.000467494,-7.796574526,9.74E-14,neg,yes,0.485603329,Zbtb20,Zbtb20_Intron,16,43534259,43534308,43534307,43534308,50,-,CTCAAGAGGCAGCTTTGGCATTAGAATAGCAACTTTCAAAGCAGTGAACG,"Intron (Zbtb20-211/Zbtb20, intron 4 of 4)",16,42907542,43569781,662240,1,Zbtb20-211,626717,Zbtb20-211;Zbtb20-217;Zbtb20-204;Zbtb20-215;Zbtb20-201;Zbtb20-203;Zbtb20-214;Zbtb20-213;Zbtb20-219;Zbtb20-216;Zbtb20-208;Zbtb20-207;Zbtb20-220;Zbtb20-206;Zbtb20-221;Zbtb20-202;Zbtb20-205,Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,98,56490,ENSMUSG00000022708,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15313,cg26495571,0.000064,0.0000134,4.79036833,0.00000259,gain,ns,-0.0000764,0.0000227,-3.364250036,0.000863931,neg,ns,0.041135314,0.006651631,6.184244507,1.97E-09,pos,ns,8.706141345,-0.002145601,0.000228749,-9.379717126,1.45E-18,neg,yes,0.669932208,Dazap1,Dazap1_Exon,10,80280945,80280994,80280993,80280994,50,-,TTTCGAGGACGAACAATCAGTGGACCAGGCTGTCAACATGCATTTTCACG,"Exon (Dazap1-207/Dazap1, exon 7 of 7)",10,80261486,80281005,19520,1,Dazap1-207,19459,Dazap1-207;Dazap1-203;Dazap1-202;Dazap1-201;Dazap1-205;Dazap1-204;Dazap1-206,Dazap1;Dazap1;Dazap1;Dazap1;Dazap1;Dazap1;Dazap1,0;0;0;0;15821;0;-1873,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,6,70248,ENSMUSG00000069565,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U5,En-Sd
23292,cg14166279,0.0000344,0.00000432,7.965673843,3.15E-14,gain,yes,-0.0000247,0.00000734,-3.363805207,0.000865275,neg,ns,0.004524388,0.002149339,2.105014234,0.036094536,pos,ns,1.44255854,-0.0000591,0.0000739,-0.799262811,0.424750003,neg,ns,0.695816704,Eri3,Eri3_Intron,4,117651897,117651946,117651897,117651898,50,-,CGCACCAAAGAGACAGCTTTAATGAGCTTCAGCTGGCGATGCCCCGAGTT,"Intron (Eri3-201/Eri3, intron 8 of 8)",4,117550365,117674297,123933,1,Eri3-201,101532,Eri3-201;Eri3-206;Eri3-203,Eri3;Eri3;Eri3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,82,97,140546,ENSMUSG00000033423,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23366,cg03769961,-0.0000138,0.00000477,-2.888520987,0.004143104,loss,ns,0.0000273,0.00000811,3.362950262,0.000867863,pos,ns,0.003510077,0.002375301,1.477739922,0.140492642,pos,ns,0.852346421,-0.000130284,0.0000817,-1.594929847,0.111746884,neg,ns,0.894555845,Sox21,Sox21_Intergenic_downstream,14,118194420,118194469,118194468,118194469,50,-,CTGGCTTAAAGGTGCATCAGAGATATGCATTTTAGCATATTCAGAACACG,Distal Intergenic,14,118233232,118237030,3799,2,Sox21-201,42610,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,26,27,223227,ENSMUSG00000061517,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9328,cg24700789,0.0000319,0.0000184,1.729006037,0.084803576,gain,ns,0.000105304,0.0000313,3.36255803,0.000869053,pos,ns,0.012386638,0.00917475,1.350079058,0.177975522,pos,ns,0.749639724,-0.00053267,0.000315519,-1.688234505,0.092371891,neg,ns,0.6537036,Nxpe4,Nxpe4_Intron,9,48183272,48183321,48183320,48183321,50,-,TCTATCTTGTCTCAGATCTAATTACATTCAGGAGAATTCAGACACTGACG,"Intron (Nxpe4-203/Nxpe4, intron 1 of 8)",9,48162023,48399871,237849,1,Nxpe4-203,21249,Nxpe4-203;Nxpe4-202,Nxpe4;Nxpe4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,7,244853,ENSMUSG00000044229,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13861,cg27448250,-0.00000308,0.00000691,-0.446249236,0.655728762,loss,ns,0.0000395,0.0000117,3.362174663,0.000870218,pos,ns,0.004983223,0.003440396,1.448444336,0.148503504,pos,ns,0.8282633,0.000170828,0.000118315,1.443842607,0.149793087,pos,ns,0.873833857,Rpl31-ps2,Rpl31-ps2_Intergenic_upstream,13,73117331,73117380,73117331,73117332,50,+,CGCTGTAACGTCCCTGTATTTATTAGGCCAAACAGAGCTGTTTGCAGAAG,Distal Intergenic,13,73233395,73233737,343,1,Rpl31-ps2-201,-116015,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,8,621486,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5996,cg01634795,-0.0000119,0.00000998,-1.192669909,0.233910759,loss,ns,0.000057,0.000017,3.362062961,0.000870557,pos,ns,0.00801915,0.004968586,1.613970218,0.107551279,pos,ns,0.968384419,-0.000233939,0.000170869,-1.369113275,0.171954997,neg,ns,0.834887515,Atp11b,Atp11b_Exon,3,35788105,35788154,35788105,35788106,50,+,CGGCATAACTCAGATAATGAAGTAAATGGAGCTCCTGTTTATGTTGTTCG,Promoter (<=1kb),3,35788115,35806968,18854,1,Atp11b-208,0,Atp11b-210;Atp11b-203;Atp11b-201;Atp11b-208;Atp11b-207,Atp11b;Atp11b;Atp11b;Atp11b;Atp11b,0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,76295,ENSMUSG00000037400,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7757,cg15102419,0.000015,0.00000204,7.341730295,1.87E-12,gain,yes,-0.0000117,0.00000347,-3.360807317,0.000874383,neg,ns,-0.001609404,0.001015863,-1.584272058,0.114151396,neg,ns,0.942518773,0.0000171,0.0000349,0.488170173,0.625774418,pos,ns,0.951925599,Rnf38,Rnf38_Exon,4,44152414,44152463,44152462,44152463,50,+,CTTGGTCGAACTGAAGGGGGCTGCCTATTTGATGTCATCTCCCATGGTCG,"Exon (Rnf38-202/Rnf38, exon 2 of 11)",4,44126210,44167608,41399,2,Rnf38-202,15145,Rnf38-202;Rnf38-203;Rnf38-201;Rnf38-204;Rnf38-208;Rnf38-206;Rnf38-212;Rnf38-210;Rnf38-217;Rnf38-209;Rnf38-205;Rnf38-207;Rnf38-216,Rnf38;Rnf38;Rnf38;Rnf38;Rnf38;Rnf38;Rnf38;Rnf38;Rnf38;Rnf38;Rnf38;Rnf38;Rnf38,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,6,73469,ENSMUSG00000035696,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1692,cg03657570,0.000000539,0.00000248,0.21750423,0.827958499,gain,ns,-0.0000141,0.00000421,-3.360415874,0.000875579,neg,ns,0.005869688,0.001233469,4.758682062,0.00000299,pos,ns,5.523915422,-0.0000912,0.0000424,-2.150127921,0.032318332,neg,ns,0.962607429,Tle4,Tle4_Intron,19,14590386,14590435,14590434,14590435,50,+,ATTTGCTGTCGAGCATGGTAAATTAATAGCAACAAATTGCTGAGGGCCCG,"Intron (Tle4-201/Tle4, intron 4 of 19)",19,14448150,14598051,149902,2,Tle4-201,7616,Tle4-201;Tle4-202;Tle4-203,Tle4;Tle4;Tle4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,29,21888,ENSMUSG00000024642,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10283,cg14255803,0.00000122,0.00000474,0.258022517,0.796560738,gain,ns,0.0000271,0.00000806,3.359641374,0.00087795,pos,ns,0.005164043,0.002360201,2.187967337,0.029418284,pos,ns,1.531382662,-0.000172985,0.0000812,-2.131215013,0.033857889,neg,ns,0.914332023,Kcnh8,Kcnh8_Intron,17,52460156,52460205,52460204,52460205,50,+,CCACATCATTTGCACGTCTGCAAGTACACGTGAGTAACCGTAATTACACG,"Intron (Gm5094-201/Gm5094-201, intron 1 of 2)",17,52602709,52979194,376486,1,Kcnh8-201,-142504,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,8,211468,ENSMUSG00000035580,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22139,cg10934081,0.0000721,0.0000101,7.156806636,6.01E-12,gain,yes,-0.0000575,0.0000171,-3.35960631,0.000878057,neg,ns,0.001253638,0.00501523,0.249966152,0.80277909,pos,ns,0.095403948,-0.000247334,0.000172473,-1.434040847,0.152568516,neg,ns,0.855768493,Pitpnb,Pitpnb_Intergenic_downstream,5,111394521,111394570,111394569,111394570,50,-,ATGAAGTAATAGGAATGCACCACAGCTCTGCTTAGCTGAAGATGGAGACG,Distal Intergenic,5,111380169,111383703,3535,1,Pitpnb-203,14401,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,3,56305,ENSMUSG00000050017,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11458,cg11391016,0.0000158,0.00000664,2.384268882,0.017714362,gain,ns,-0.0000379,0.0000113,-3.358936957,0.000880111,neg,ns,0.016230933,0.003303743,4.912891737,0.00000146,pos,ns,5.836951829,-0.000586997,0.000113615,-5.16652058,0.000000428,neg,yes,0.877397615,Hnrnpk,Hnrnpk_threeUTR,13,58397709,58397758,58397757,58397758,50,-,TCTCTTTCTAATCAGGCAGTGAGGCATAAACTGTTGGGACATACCGCTCG,3' UTR,13,58391142,58403343,12202,2,Hnrnpk-202,5585,Hnrnpk-202;Hnrnpk-224;Hnrnpk-221;Hnrnpk-232;Hnrnpk-216;Hnrnpk-201;Hnrnpk-205;Hnrnpk-217;Hnrnpk-206;Hnrnpk-209;Hnrnpk-213;Hnrnpk-227;Hnrnpk-234;Hnrnpk-233;Hnrnpk-228;Hnrnpk-214;Hnrnpk-215;Hnrnpk-211;Hnrnpk-208;Hnrnpk-212;Hnrnpk-231;Hnrnpk-230;Hnrnpk-203;Hnrnpk-218;Hnrnpk-226;Hnrnpk-207;Hnrnpk-219;Hnrnpk-225;Hnrnpk-229;Hnrnpk-223;Hnrnpk-220;Hnrnpk-210;Hnrnpk-204;Hnrnpk-222;Rmi1-205;Rmi1-201;Rmi1-204,Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Rmi1;Rmi1;Rmi1,0;0;0;0;0;0;0;-3841;-2924;-3734;-2511;-3625;-3820;-3539;-3013;0;-1989;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;4744;4297;-4490;-4505;-4942,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,19,15387,ENSMUSG00000021546,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12887,cg02712553,-0.000000876,0.00000975,-0.089842862,0.928470105,loss,ns,0.0000556,0.0000166,3.358897652,0.000880232,pos,ns,0.007893228,0.004853305,1.62636144,0.104888843,pos,ns,0.979270707,-0.000121755,0.000166905,-0.729488589,0.466253664,neg,ns,0.869370329,Zfp365,Zfp365_Exon,10,67909812,67909861,67909860,67909861,50,+,GGCCCTCAAGGATGACAAGCTTCTAAATCTGGTATGGTCTCCACACCTCG,"Exon (Zfp365-201/Zfp365, exon 2 of 5)",10,67886103,67912662,26560,2,Zfp365-201,2801,Zfp365-201;Zfp365-204,Zfp365;Zfp365,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,216049,ENSMUSG00000037855,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7000,cg19910880,-0.00000571,0.00000241,-2.366001783,0.018596218,loss,ns,0.0000138,0.0000041,3.358762267,0.000880648,pos,ns,0.001648494,0.001201038,1.372557416,0.17088217,pos,ns,0.767303249,-0.0000744,0.0000413,-1.801015511,0.07267218,neg,ns,0.942046357,Gm7382,Gm7382_Intron,15,40517387,40517436,40517435,40517436,50,+,TATTATCATATATCAGGTGTCACCTGCAATTTCATGTCTCTGGCAATGCG,"Intron (Gm16294-201/Gm16294-201, intron 2 of 2)",15,40537321,40538425,1105,1,Gm7382-201,-19885,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,22,664872,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25059,cg24881483,-0.0000199,0.00000543,-3.670447808,0.000285001,loss,ns,-0.000031,0.00000922,-3.358141335,0.000882559,neg,ns,-0.012207095,0.002700212,-4.520790972,0.00000878,neg,ns,5.056578286,0.000163054,0.0000929,1.755905515,0.080092074,pos,ns,0.871990009,Slc23a2,Slc23a2_Exon,2,132078464,132078513,132078512,132078513,50,+,CCAAAAATGCAAAAGCACTGGCCTGAAACAGGGGTAACCTAAAAGAAACG,"Exon (Slc23a2-201/Slc23a2, exon 6 of 16)",2,132052496,132145108,92613,2,Slc23a2-201,66595,Slc23a2-201;Slc23a2-202;Slc23a2-207,Slc23a2;Slc23a2;Slc23a2,0;0;-456,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,4,54338,ENSMUSG00000027340,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4459,cg26603143,0.0000337,0.00000802,4.200530598,0.0000349,gain,ns,0.0000457,0.0000136,3.356405969,0.000887918,pos,ns,0.008712144,0.003989235,2.183913504,0.02971782,pos,ns,1.526983057,0.000337962,0.000137189,2.463470235,0.014302814,pos,ns,0.098892918,Sox4,Sox4_threeUTR,13,28949826,28949875,28949874,28949875,50,-,TGAGATATTAACCAGCCGCCCTGTTATAAAATCAGGAAATCCAAACAGCG,3' UTR,13,28948919,28953713,4795,2,Sox4-201,3838,Sox4-201,Sox4,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,8,12,20677,ENSMUSG00000076431,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21273,cg17033047,-0.0000696,0.0000192,-3.625183294,0.000337417,loss,ns,0.000109411,0.0000326,3.355818932,0.000889738,pos,ns,-0.011253034,0.009551663,-1.17812299,0.239651159,neg,ns,0.620420466,0.00042722,0.000328481,1.300593467,0.194363649,pos,ns,0.510782403,Kcna3,Kcna3_Intron,3,107038831,107038880,107038831,107038832,50,-,CGGAAGTTACTAATTCGGACCTGACTGATGCAGTTTCCATAGCAACCCAT,"Intron (Gm27008-201/Gm27008-201, intron 2 of 5)",3,107036169,107038070,1902,1,Kcna3-201,2711,Kcna3-201,Kcna3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,3,16491,ENSMUSG00000047959,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20387,cg02994891,0.0000422,0.00000434,9.739931682,9.87E-20,gain,yes,-0.0000247,0.00000737,-3.355009189,0.000892254,neg,ns,0.00121888,0.002158965,0.564567022,0.572776572,pos,ns,0.242014754,0.0000599,0.0000742,0.806125941,0.420788188,pos,ns,0.073599644,Hoxc5,Hoxc5_Intron,15,103014685,103014734,103014733,103014734,50,-,TGTGTGCGCCCAAATTTACGACGACATAATTGGATCATAGGAACAAAACG,"Intron (Hoxc5-202/Hoxc5, intron 1 of 1)",15,102967443,103015676,48234,1,Hoxc5-202,47242,Hoxc4-202;Hoxc5-202;Hoxc5-201;Hoxc6-202;Hoxc6-203;Hoxc6-201,Hoxc4;Hoxc5;Hoxc5;Hoxc6;Hoxc6;Hoxc6,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,46,134,15424,ENSMUSG00000022485,mapped to different genes,15,103014167,103014734,568,*,568,41,0.588028169,0.835773758,0.072183099,1.73E-25,CpGisland,TRUE,U13,Hc-P
17450,cg16918277,0.00000313,0.00000488,0.641349065,0.521769802,gain,ns,-0.0000278,0.00000829,-3.354945542,0.000892452,neg,ns,-0.005502743,0.002430049,-2.264458058,0.024236374,neg,ns,1.615532359,-0.00000678,0.0000836,-0.081160257,0.935366878,neg,ns,0.874067257,Nrxn3,Nrxn3_Exon,12,90321922,90321971,90321970,90321971,50,+,TCCCTTCCTTACAGCCAGAAGCTCTAATGCAGCTAGATCACTCCGTGCCG,"Exon (Nrxn3-213/Nrxn3, exon 18 of 19)",12,88722986,90332878,1609893,1,Nrxn3-213,1598936,Nrxn3-213;Nrxn3-208;Nrxn3-205;Nrxn3-201;Nrxn3-210;Nrxn3-214;Nrxn3-203;Nrxn3-202,Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,39,18191,ENSMUSG00000066392,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10376,cg08153006,-0.0000309,0.0000104,-2.972480474,0.003185492,loss,ns,0.0000593,0.0000177,3.354339532,0.00089434,pos,ns,0.012877842,0.00517629,2.487851708,0.013376914,pos,ns,1.873644081,-0.000395604,0.000178012,-2.222343495,0.026981482,neg,ns,0.827424514,Npas3,Npas3_Intron,12,53262212,53262261,53262260,53262261,50,-,CTGTGAAATTTGTCATAGATAAATTTGCTTGGATTATCTTGTCACCACCG,"Intron (Npas3-204/Npas3, intron 1 of 10)",12,53248157,54069532,821376,1,Npas3-204,14055,Npas3-204;Npas3-201;Npas3-202;Npas3-203,Npas3;Npas3;Npas3;Npas3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,83,103,27386,ENSMUSG00000021010,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19647,cg04419051,0.00000418,0.0000173,0.24231092,0.80869948,gain,ns,-0.0000984,0.0000293,-3.352511838,0.000900056,neg,ns,-0.000275967,0.008594823,-0.0321085,0.974406188,neg,ns,0.011259967,-0.000609528,0.000295575,-2.062176658,0.040023947,neg,ns,0.712461294,Gm28267,Gm28267_Intergenic_upstream,9,100271768,100271817,100271768,100271769,50,-,CGGGCCATTAGTTTTCATTAAAGATCAAATGGAATGGGTACTTACTTACT,Distal Intergenic,9,100404495,100404759,265,1,Gm28267-201,-132727,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,29,29,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25927,cg14415959,0.000147017,0.00000948,15.50448099,1.55E-40,gain,yes,-0.000054,0.0000161,-3.352474799,0.000900172,neg,ns,-0.006555492,0.004719389,-1.389055264,0.165812969,neg,ns,0.780381505,0.00012005,0.000162299,0.739680323,0.460053753,pos,ns,0.601023303,Szrd1,Szrd1_Exon,4,141118673,141118722,141118721,141118722,50,+,ACCGTTGCTGGTGGGCCTCTTGAGGATGCGGATCTGTGGAGGGGGCCCCG,"Exon (Szrd1-205/Szrd1, exon 3 of 4)",4,141113001,141139727,26727,2,Szrd1-205,21005,Szrd1-205;Szrd1-203;Szrd1-201;Szrd1-202;Szrd1-204,Szrd1;Szrd1;Szrd1;Szrd1;Szrd1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,213491,ENSMUSG00000040842,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25829,cg23645068,0.0000259,0.00000733,3.526635004,0.000484458,gain,ns,0.0000417,0.0000125,3.351923911,0.000901902,pos,ns,0.016355778,0.003648722,4.482605178,0.0000104,pos,ns,4.983341101,-0.000273622,0.000125479,-2.180615141,0.029963475,neg,ns,0.082743903,Uncx,Uncx_Intergenic_downstream,5,139585582,139585631,139585630,139585631,50,+,ATACATTTCCTAACGAAATTGAAGTGCTTTGTGCTGCCAGTGGAAAGCCG,Distal Intergenic,5,139543898,139545268,1371,1,Uncx-202,41684,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,59,88,22255,ENSMUSG00000029546,conserved gene and region,5,139585354,139585726,373,*,373,27,0.616621984,0.761512287,0.072386059,4.94E-17,CpGisland,TRUE,U13,Hc-P
5712,cg23701217,0.00000831,0.0000226,0.367584663,0.713433783,gain,ns,0.000128714,0.0000384,3.350196122,0.000907347,pos,ns,0.009835215,0.011255746,0.873794963,0.382906311,pos,ns,0.416907476,-0.00018706,0.000387084,-0.483254427,0.629256225,neg,ns,0.575186152,Kctd15,Kctd15_Intergenic_downstream,7,34606285,34606334,34606285,34606286,50,+,CGTGCTAAGGCAAGTCATTTCCCGAAACACTGCAGACACACGGCCTCAGG,Distal Intergenic,7,34640182,34648744,8563,2,Kctd15-206,42410,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,25,233107,ENSMUSG00000030499,conserved gene and region,7,34606195,34606326,132,*,132,9,0.606060606,0.754285714,0.068181818,0.00000904,CpGisland,TRUE,U15,NS
12159,cg22653845,0.00000159,0.0000254,0.062704105,0.950042538,gain,ns,0.000144497,0.0000431,3.349818386,0.000908541,pos,ns,0.034309313,0.012637331,2.714917613,0.007000662,pos,ns,2.154860913,-0.000444107,0.000434597,-1.021882632,0.30763324,neg,ns,0.644833894,Skor1,Skor1_Promoter,9,63152153,63152202,63152153,63152154,50,+,CGCTTACTGTGTAAACACGTATTCTGAATTAAAAATCAGATGTAATTAAG,Promoter (3-4kb),9,63138170,63148961,10792,2,Skor1-202,-3192,Skor1-202,Skor1,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,6,15,207667,ENSMUSG00000022245,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
10414,cg17942396,0.00000381,0.00000892,0.427807491,0.669088321,gain,ns,0.0000507,0.0000151,3.348791883,0.000911795,pos,ns,0.007470046,0.004437884,1.683244885,0.093334426,pos,ns,1.029958138,-0.0000556,0.000152618,-0.364409345,0.715800802,neg,ns,0.458437286,Msx2,Msx2_Intergenic_downstream,13,53463990,53464039,53463990,53463991,50,+,CGTTAGTAATGGAAAATACCAGGTTGTTTAAAATTATAATAATAATTGTT,Downstream (2-3kb),13,53466884,53473074,6191,2,Msx2-201,9035,Msx2-201,Msx2,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,2,4,17702,ENSMUSG00000021469,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
6748,cg12399307,-0.0000417,0.0000108,-3.866991588,0.000134282,loss,ns,0.0000613,0.0000183,3.348258208,0.000913491,pos,ns,0.004491455,0.005366397,0.836959093,0.403260298,pos,ns,0.394414534,-0.000262027,0.00018455,-1.419815118,0.156666344,neg,ns,0.593820032,Gm12129,Gm12129_Intergenic_downstream,11,38346522,38346571,38346522,38346523,50,+,CGGCAGTACTTTGAAAAAGTTATGAACGTGGGTGAGATCAATCACTTTCT,Distal Intergenic,11,38219069,38220215,1147,1,Gm12129-201,127453,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,11,276941,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19896,cg12304451,-0.00000763,0.00000481,-1.588252758,0.113248562,loss,ns,-0.0000273,0.00000816,-3.347978175,0.000914382,neg,ns,0.016935038,0.002392034,7.079765991,9.71E-12,pos,yes,11.01294289,-0.000314875,0.0000823,-3.827715644,0.000156468,neg,ns,0.92377292,Atp1a1,Atp1a1_Exon,3,101590485,101590534,101590485,101590486,50,-,CGATGATACCGATGAGGAAGATGACAGCCTCAAGCCAGGTGTACTCAAGG,"Exon (Atp1a1-201/Atp1a1, exon 8 of 23)",3,101576219,101604684,28466,2,Atp1a1-201,14150,Atp1a1-201;Atp1a1-203,Atp1a1;Atp1a1,0;-1446,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,11928,ENSMUSG00000033161,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8483,cg15148667,0.00000873,0.0000161,0.54104473,0.588865321,gain,ns,0.0000917,0.0000274,3.34721396,0.000916817,pos,ns,-0.003572939,0.008028471,-0.445033514,0.656606115,neg,ns,0.182695077,0.000472996,0.000276098,1.713140797,0.087686434,pos,ns,0.447084193,Lbx1,Lbx1_Intergenic_downstream,19,45225931,45225980,45225931,45225932,50,+,CGCAGGCAAACAGCTCCATATAATTCTTTCAGTGGAGAGTAATTAATCAC,Distal Intergenic,19,45232684,45235812,3129,2,Lbx1-201,9832,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,30,50,16814,ENSMUSG00000025216,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
13639,cg27167954,-0.0000132,0.0000097,-1.364912191,0.173270453,loss,ns,0.0000551,0.0000165,3.346808769,0.000918111,pos,ns,-0.00090791,0.004826331,-0.188115997,0.850908799,neg,ns,0.070116985,-0.0000773,0.000165977,-0.465518511,0.641887053,neg,ns,0.711117159,Gm48818,Gm48818_Intergenic_downstream,11,71611022,71611071,71611022,71611023,50,+,CGTGCTAATATGGCATCAGGAGCTCACCTGCTTCTTGGCATTTGGAGCAG,Distal Intergenic,11,71696271,71697516,1246,2,Gm48818-201,86445,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,5,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20743,cg16609170,-0.00000432,0.00000991,-0.435935108,0.663187222,loss,ns,0.0000563,0.0000168,3.345332751,0.000922839,pos,ns,0.007458202,0.004932381,1.51208958,0.131529805,pos,ns,0.880975822,0.0000531,0.000169624,0.31303361,0.754465621,pos,ns,0.933794723,Capza1,Capza1_Exon,3,104842658,104842707,104842706,104842707,50,+,TACTGTGCTGCCCCTTCCCTGAGGAGATTGTCATTATTAAGTAGTAGCCG,"Exon (Capza1-201/Capza1, exon 3 of 10)",3,104822779,104864505,41727,2,Capza1-201,21798,Capza1-201;Capza1-203;Capza1-204;Capza1-202,Capza1;Capza1;Capza1;Capza1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,12340,ENSMUSG00000070372,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9186,cg24510043,-0.00000696,0.00000924,-0.753093078,0.451965516,loss,ns,0.0000525,0.0000157,3.344861645,0.000924352,pos,ns,0.009888986,0.00460052,2.14953661,0.032365538,pos,ns,1.48991717,-0.000227386,0.000158211,-1.437224917,0.151662648,neg,ns,0.809693814,Gm13471,Gm13471_Intergenic_upstream,2,47429997,47430046,47430045,47430046,50,+,CAATTTACTTGTGTGCCCCAATTAGCACTGCTAACTGGGGCACAAAATCG,Distal Intergenic,2,48140146,48140578,433,1,Gm13471-201,-710100,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,9,10,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24406,cg09511421,-0.0000276,0.000012,-2.302616336,0.021962536,loss,ns,0.0000682,0.0000204,3.344849995,0.00092439,pos,ns,0.008506805,0.005969272,1.42509915,0.155134557,pos,ns,0.809291451,0.0000117,0.000205283,0.05691481,0.954649723,pos,ns,0.548523915,Ndst4,Ndst4_fiveUTR,3,125404237,125404286,125404237,125404238,50,+,CGGTGTGCTGAACAGAGGTTTGAATCATTCCAGCTGGCTGCTTGTTTTGA,Promoter (<=1kb),3,125404076,125728899,324824,1,Ndst4-204,161,Ndst4-204;Ndst4-202,Ndst4;Ndst4,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,3,64580,ENSMUSG00000027971,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3828,cg26992565,-0.0000148,0.00000816,-1.817001882,0.070182305,loss,ns,0.0000463,0.0000139,3.343183304,0.000929763,pos,ns,-0.001142035,0.004061546,-0.281182383,0.778758101,neg,ns,0.108597422,-0.0000827,0.000139676,-0.591847464,0.554384109,neg,ns,0.722469924,Adgrb3,Adgrb3_Exon,1,25553675,25553724,25553723,25553724,50,+,CTGGACAGAGGGCAGTGTTATTGCAAACCCTTGATTCTCTTAATGGGCCG,"Exon (Adgrb3-206/Adgrb3, exon 3 of 29)",1,25067550,25826139,758590,2,Adgrb3-206,272415,Adgrb3-206;Adgrb3-205;Adgrb3-207;Adgrb3-201;Adgrb3-210,Adgrb3;Adgrb3;Adgrb3;Adgrb3;Adgrb3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,14,25,210933,ENSMUSG00000033569,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20002,cg10771391,0.0000898,0.0000116,7.756250905,1.27E-13,gain,yes,0.0000657,0.0000197,3.342948377,0.000930523,pos,ns,0.029678735,0.005761219,5.151468284,0.000000461,pos,ns,6.336625096,-0.00053029,0.000198128,-2.676502818,0.007835211,neg,ns,0.445697913,Nhsl2,Nhsl2_Exon,X,102071309,102071358,102071357,102071358,50,+,TCTCTCCTTCCCTAGCTGCAGCTAACTCGGGTCGGGAAAATGCGACAGCG,"Exon (Nhsl2-201/Nhsl2, exon 2 of 8)",20,101849385,102076276,226892,1,Nhsl2-202,221924,Nhsl2-202;Nhsl2-201;Nhsl2-207;Nhsl2-206;Nhsl2-205;Nhsl2-204;Rtl5-201;Rtl5-202;Rtl5-204;Rtl5-203,Nhsl2;Nhsl2;Nhsl2;Nhsl2;Nhsl2;Nhsl2;Rtl5;Rtl5;Rtl5;Rtl5,0;0;0;0;0;0;-113;-5;-5;-3709,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,7,100042480,ENSMUSG00000079481,conserved gene and region,X,102070952,102071518,567,*,567,50,0.66313933,0.807968536,0.088183422,2.48E-35,CpGisland,TRUE,NA,NRS
23258,cg02368158,0.0000978,0.0000153,6.413060697,5.32E-10,gain,yes,-0.0000866,0.0000259,-3.342344503,0.000932479,neg,ns,-0.007176694,0.007592959,-0.945177585,0.345304322,neg,ns,0.461797986,-0.000240229,0.000261121,-0.91999062,0.358292987,neg,ns,0.716843565,Eri3,Eri3_Intron,4,117630473,117630522,117630473,117630474,50,-,CGGCAGTTGTTTAACTATGCAAGCTGCATGCCTGCCTTTATTGCGCTGTG,"Intron (Eri3-201/Eri3, intron 7 of 8)",4,117550365,117674297,123933,1,Eri3-201,80108,Eri3-201;Eri3-206,Eri3;Eri3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,82,97,140546,ENSMUSG00000033423,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26583,cg08244911,0.0000324,0.0000117,2.761407804,0.006098439,gain,ns,-0.0000666,0.0000199,-3.341982496,0.000933653,neg,ns,-0.000353319,0.005839359,-0.060506474,0.951791248,neg,ns,0.021458293,-0.000100104,0.000200815,-0.498487052,0.618494287,neg,ns,0.878049312,Casz1,Casz1_Intron,4,148930515,148930564,148930515,148930516,50,-,CGCCACATCAGTGACAGAGTAATTAACAAACATTGCGAGATCAATGAGGA,"Intron (Casz1-201/Casz1, intron 5 of 15)",4,148804429,148945129,140701,1,Casz1-201,126086,Casz1-201;Casz1-202;Casz1-206;Casz1-204,Casz1;Casz1;Casz1;Casz1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,94,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27057,cg25332194,-0.000000529,0.00000175,-0.301858164,0.762962593,loss,ns,-0.00000996,0.00000298,-3.341708071,0.000934544,neg,ns,-0.002364911,0.000872755,-2.709708495,0.007108917,neg,ns,2.14819655,0.00008,0.00003,2.665499548,0.008090222,pos,ns,0.961158612,Rpn2,Rpn2_Exon,2,157323221,157323270,157323269,157323270,50,-,AGGATCGCTGCAGAGCAGAGCAGTAGATTGGCAAAATATAGGACACTACG,"Exon (Rpn2-201/Rpn2, exon 16 of 17)",2,157279059,157326319,47261,1,Rpn2-202,44162,Rpn2-202;Rpn2-201;Rpn2-206;Rpn2-205;Rpn2-207;Rpn2-209,Rpn2;Rpn2;Rpn2;Rpn2;Rpn2;Rpn2,0;0;0;0;7044;3438,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,20014,ENSMUSG00000027642,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24940,cg09614161,0.0000264,0.0000106,2.483065677,0.013554351,gain,ns,-0.0000604,0.0000181,-3.341543665,0.000935078,neg,ns,-0.002083952,0.005297912,-0.393353425,0.694328849,neg,ns,0.15843479,0.0000602,0.000182195,0.330481746,0.741259225,pos,ns,0.604068503,Adgrb2,Adgrb2_Exon,4,130014979,130015028,130014979,130014980,50,+,CGTGTGGAGCGGTCCCCAGCCCCCTGCTCAGCTCAGCCTCGGCCAGGAAC,"Exon (Adgrb2-208/Adgrb2, exon 22 of 29)",4,129984870,130022633,37764,1,Adgrb2-207,30109,Adgrb2-207;Adgrb2-205;Adgrb2-208;Adgrb2-204;Adgrb2-201;Adgrb2-202;Adgrb2-206;Adgrb2-211;Adgrb2-203;Adgrb2-213;Adgrb2-209;Adgrb2-212,Adgrb2;Adgrb2;Adgrb2;Adgrb2;Adgrb2;Adgrb2;Adgrb2;Adgrb2;Adgrb2;Adgrb2;Adgrb2;Adgrb2,0;0;0;0;0;0;0;5103;4910;2778;1343;-3748,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,8,230775,ENSMUSG00000028782,conserved gene and region,4,130014860,130015101,242,*,242,13,0.698347107,0.441358025,0.053719008,0.000000597,CpGisland,TRUE,NA,NRS
26791,cg13486813,-0.00000833,0.000012,-0.691870363,0.489536601,loss,ns,0.0000683,0.0000205,3.341000326,0.000936846,pos,ns,0.006540381,0.00599176,1.091562569,0.275873051,pos,ns,0.559290722,0.0000426,0.000206056,0.206698997,0.836380637,pos,ns,0.84696425,Gpr173,Gpr173_Exon,X,152347177,152347226,152347225,152347226,50,-,GCCACAATCTTGCAGCTGAGTGCACTGAAGGTCCATGAAGAGCCGTGGCG,"Exon (Gpr173-201/Gpr173, exon 3 of 3)",20,152343598,152368704,25107,2,Gpr173-201,21478,Gpr173-201;Tspyl2-202;Tspyl2-203;Tspyl2-201,Gpr173;Tspyl2;Tspyl2;Tspyl2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,70771,ENSMUSG00000056679,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3627,cg07945623,-0.0000739,0.0000165,-4.480669567,0.0000105,loss,ns,0.0000935,0.000028,3.340421174,0.000938733,pos,ns,-0.00287353,0.008204436,-0.350241044,0.726395658,neg,ns,0.13882676,-0.0000447,0.00028215,-0.158506448,0.874160947,neg,ns,0.362644933,Gm47909,Gm47909_Intergenic_downstream,14,24827010,24827059,24827010,24827011,50,+,CGACCTCCCTGTCAGGGAGAAATGGCAAGCATATCAAACAAGACCAAGAT,Distal Intergenic,14,25089939,25090406,468,2,Gm47909-201,263347,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,13,17,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2243,cg23485338,0.0000303,0.0000139,2.175225791,0.030368637,gain,ns,-0.000079,0.0000236,-3.339517674,0.000941685,neg,ns,0.024040747,0.00692853,3.469819117,0.000594616,pos,ns,3.225763221,-0.001416947,0.000238272,-5.946771806,7.37E-09,neg,yes,0.485455777,Gm12024,Gm12024_Intergenic_upstream,11,18748135,18748184,18748135,18748136,50,-,CGTCTGGTTTGTCTGTTGTTTTACTGCTGACCTTCAAATCAACTTTAACC,Distal Intergenic,11,18577227,18578479,1253,2,Gm12024-201,-169705,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,12,100417654,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8421,cg15456045,-0.0000754,0.0000214,-3.529290238,0.00047981,loss,ns,0.000121185,0.0000363,3.338592266,0.000944717,pos,ns,0.019740012,0.010634163,1.856282687,0.064361952,pos,ns,1.191370793,-0.000358271,0.000365708,-0.979663677,0.328016073,neg,ns,0.726031422,Kazald1,Kazald1_Intron,19,45104840,45104889,45104888,45104889,50,-,GATGGGCCGACAGCCAGAGATTAATTCAACTGATCGAGTTATAAAGAGCG,"Intron (Gm35867-203/Gm35867-203, intron 2 of 4)",19,45076139,45079289,3151,1,Kazald1-201,28750,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,8,107250,ENSMUSG00000025213,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12717,cg02054884,-0.0000151,0.00000862,-1.749213405,0.081243765,loss,ns,0.0000489,0.0000147,3.338178687,0.000946075,pos,ns,0.008510316,0.004292573,1.98256786,0.048298253,pos,ns,1.316068574,-0.00026351,0.000147621,-1.78504418,0.075231809,neg,ns,0.851977909,Gm43516,Gm43516_Intergenic_upstream,3,66939034,66939083,66939082,66939083,50,+,ATTTAATGTGTCGTCTTCCATTTTTACTGTCCCATATGTATGCTTACACG,Distal Intergenic,3,66953541,66953862,322,1,Gm43516-201,-14458,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,11,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16307,cg11523137,-0.00000484,0.00000638,-0.758661093,0.448631735,loss,ns,0.0000362,0.0000108,3.336777591,0.000950689,pos,ns,0.006238668,0.003176155,1.96422002,0.050397753,pos,ns,1.297588826,-0.000178188,0.000109228,-1.631346208,0.103832733,neg,ns,0.781955859,Mrm1,Mrm1_Intergenic_downstream,11,84726262,84726311,84726262,84726263,50,+,CGGAGCAAACGCCCCGGTTCTGTAAATGACATTCTGTACTGTTAGCATTT,Distal Intergenic,11,84814743,84815390,648,2,Mrm1-203,89079,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,37,42,217038,ENSMUSG00000018405,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27884,cg20591271,0.000127277,0.0000129,9.836942281,4.74E-20,gain,yes,-0.0000733,0.000022,-3.336488654,0.000951643,neg,ns,0.052887607,0.006439706,8.212736053,5.91E-15,pos,yes,14.22830541,-0.000213557,0.000221461,-0.964310897,0.335641707,neg,ns,0.875073413,Prox1,Prox1_Exon,1,190123317,190123366,190123365,190123366,50,-,CAGGAAGGATCAACATCTTTGCCTGCGATAATGGCATTGAAAAACTCCCG,"Exon (Prox1-202/Prox1, exon 5 of 5)",1,190118035,190170714,52680,2,Prox1-202,47348,Prox1-202;Prox1-201;Prox1-203,Prox1;Prox1;Prox1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,19,59,19130,ENSMUSG00000010175,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15262,cg04707251,-0.00000563,0.00000682,-0.825450094,0.409750869,loss,ns,-0.0000387,0.0000116,-3.334872749,0.000956996,neg,ns,0.002118011,0.003396199,0.623641504,0.533321646,pos,ns,0.273010789,-0.000353797,0.000116795,-3.029210871,0.002658179,neg,ns,0.826535439,Hnrnpll,Hnrnpll_Exon,17,80048625,80048674,80048673,80048674,50,-,GGTTTAGTGTAGTCCCAACTGTCATTGTCATTCCTAATAACATTTAGACG,"Exon (Hnrnpll-205/Hnrnpll, exon 6 of 13)",17,80029487,80062227,32741,2,Hnrnpll-205,13553,Hnrnpll-205;Hnrnpll-201;Hnrnpll-203;Hnrnpll-204;Hnrnpll-207;Hnrnpll-206,Hnrnpll;Hnrnpll;Hnrnpll;Hnrnpll;Hnrnpll;Hnrnpll,0;0;0;0;0;13594,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,6,72692,ENSMUSG00000024095,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21017,cg02321644,-0.0000688,0.0000492,-1.397758554,0.163184975,loss,ns,-0.000278933,0.0000837,-3.334038139,0.000959771,neg,ns,0.028909923,0.024510227,1.179504491,0.23910175,pos,ns,0.621417246,-0.002253882,0.000842905,-2.673946185,0.00789381,neg,ns,0.62251249,Dcdc5,Dcdc5_Intron,2,106074792,106074841,106074840,106074841,50,+,ACTTGCTCAAGCAGAAGATGTGCCAGCATATTTAATGCACAGCTACTTCG,"Intron (Dcdc5-203/Dcdc5, intron 6 of 8)",2,106003336,106157718,154383,1,Dcdc5-203,71456,Dcdc5-203;Dcdc5-202,Dcdc5;Dcdc5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,22,329482,ENSMUSG00000074981,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23314,cg14962578,-0.00000434,0.00000402,-1.077802768,0.281959752,loss,ns,0.0000228,0.00000684,3.333310856,0.000962196,pos,ns,0.005554824,0.002003228,2.772936063,0.005891651,pos,ns,2.229762984,-0.0000506,0.0000689,-0.735182855,0.462783955,neg,ns,0.946389294,Tnrc6c,Tnrc6c_Exon,11,117749241,117749290,117749289,117749290,50,+,CAGGCATACCAACGTTTACAAATCCAGCAGCAGATGTTACAGGCCCAGCG,"Exon (Tnrc6c-201/Tnrc6c, exon 14 of 22)",11,117654289,117763437,109149,1,Tnrc6c-201,94952,Tnrc6c-201;Tnrc6c-205;Tnrc6c-202;Tnrc6c-203;Tnrc6c-204;Tnrc6c-206,Tnrc6c;Tnrc6c;Tnrc6c;Tnrc6c;Tnrc6c;Tnrc6c,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,217351,ENSMUSG00000025571,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26779,cg04927657,1.53E-08,0.00000907,0.001687956,0.998654292,gain,ns,0.0000513,0.0000154,3.333291342,0.000962261,pos,ns,0.011488655,0.00451247,2.545979416,0.011380892,pos,ns,1.943823711,-0.000218503,0.000155183,-1.408031683,0.160123714,neg,ns,0.10838397,Kdm5c,Kdm5c_Exon,X,152233604,152233653,152233604,152233605,50,-,CGGTGTTCGAGCCTAGCTGGGCCGAGTTCCGAGACCCTCTTGGCTACATC,Promoter (<=1kb),20,152233020,152273768,40749,1,Kdm5c-202,584,Kdm5c-202;Kdm5c-203;Kdm5c-204;Kdm5c-201,Kdm5c;Kdm5c;Kdm5c;Kdm5c,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,7,20591,ENSMUSG00000025332,conserved gene and region,X,152233407,152233786,380,*,380,37,0.660526316,0.892811786,0.097368421,5.79E-28,CpGisland,TRUE,NA,NRS
1944,cg20911152,0.00000989,0.00000333,2.974135385,0.003168842,gain,ns,-0.0000188,0.00000565,-3.332882186,0.000963627,neg,ns,-0.004036989,0.001655136,-2.43906864,0.015285916,neg,ns,1.81570853,0.0000829,0.0000569,1.45630696,0.146319828,pos,ns,0.9189825,Arhgap35,Arhgap35_Exon,7,16564849,16564898,16564897,16564898,50,-,GTCTGCTCCACAATGTGCATCTTACATTCCACACAATCCTCCAGGGAGCG,"Exon (Arhgap35-201/Arhgap35, exon 2 of 7)",7,16493719,16614993,121275,2,Arhgap35-201,50095,Arhgap35-201;Arhgap35-202,Arhgap35;Arhgap35,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,5,232906,ENSMUSG00000058230,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20048,cg10183248,0.0000664,0.0000104,6.383571328,6.31E-10,gain,yes,-0.0000589,0.0000177,-3.331648682,0.000967759,neg,ns,0.027853676,0.005178762,5.378442936,0.000000148,pos,ns,6.829034951,-0.000146115,0.000178097,-0.820422105,0.412605916,neg,ns,0.325963249,Ubtf,Ubtf_Exon,11,102316352,102316401,102316400,102316401,50,-,GGCCTTTGGGGGCGGCCATTTCCAGGTCTGTGGGGCAGTCGGCTTCTCCG,"Exon (Ubtf-210/Ubtf, exon 2 of 21)",11,102304560,102319096,14537,2,Ubtf-210,2695,Ubtf-210;Ubtf-213;Ubtf-202;Ubtf-203;Ubtf-204;Ubtf-201;Ubtf-205;Ubtf-206;Ubtf-209;Ubtf-208;Ubtf-207,Ubtf;Ubtf;Ubtf;Ubtf;Ubtf;Ubtf;Ubtf;Ubtf;Ubtf;Ubtf;Ubtf,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,8,21429,ENSMUSG00000020923,conserved gene and region,11,102316364,102316454,91,*,91,8,0.67032967,0.81981982,0.087912088,0.0000058,CpGisland,TRUE,NA,NRS
16439,cg01522923,-0.0000101,0.00000325,-3.114930532,0.002011858,loss,ns,0.0000184,0.00000552,3.331474895,0.000968342,pos,ns,0.004971354,0.001616828,3.074758253,0.002294204,pos,ns,2.639367996,-0.000125622,0.0000556,-2.259286918,0.024559782,neg,ns,0.897239391,Exoc6b,Exoc6b_threeUTR,6,85003203,85003252,85003251,85003252,50,-,CACAGCATTAATTTATCAACAGTGGCAGAAATATTTCTCTGTTGTAGTCG,3' UTR,6,84618487,85069513,451027,2,Exoc6b-203,66261,Exoc6b-203;Exoc6b-202;Exoc6b-201;Exoc6b-207;Exoc6b-204;Exoc6b-205;Exoc6b-206,Exoc6b;Exoc6b;Exoc6b;Exoc6b;Exoc6b;Exoc6b;Exoc6b,0;0;0;0;0;0;66223,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,8,75914,ENSMUSG00000033769,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17998,cg10570391,0.000134746,0.0000147,9.174101632,6.57E-18,gain,yes,0.0000831,0.000025,3.331445374,0.000968441,pos,ns,0.041010126,0.007310182,5.610000547,4.49E-08,pos,ns,7.348148136,-0.000620364,0.000251397,-2.467672635,0.014139283,neg,ns,0.280700729,Arx,Arx_Exon,X,93297354,93297403,93297354,93297355,50,-,CGCAGCTCAACATCCTGCCGGGCACCAGCACGGGCAAGGAGGTGTGCTAA,"Exon (Arx-201/Arx, exon 5 of 5)",20,93286496,93298357,11862,1,Arx-201,10858,Arx-201;Arx-202,Arx;Arx,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,32,11878,ENSMUSG00000035277,conserved gene and region,X,93297193,93297442,250,*,250,31,0.724,0.948592411,0.124,4.72E-27,CpGisland,TRUE,U3,Pr-B
27454,cg13467309,0.00000415,0.00000273,1.521869908,0.12906104,gain,ns,-0.0000154,0.00000464,-3.330932177,0.000970166,neg,ns,-0.001189711,0.001358031,-0.87605574,0.381678046,neg,ns,0.41830282,-0.0000311,0.0000467,-0.66668743,0.50546769,neg,ns,0.960147695,Pbx1,Pbx1_Intron,1,168269143,168269192,168269143,168269144,50,-,CGTTGAGTTTATGTGAAAGTAATTAACAGTAATTAATCCTTAATTACAGT,"Intron (Pbx1-208/Pbx1, intron 2 of 7)",1,168119364,168432270,312907,2,Pbx1-208,163078,Pbx1-208;Pbx1-205;Pbx1-206;Pbx1-201;Pbx1-202;Pbx1-204,Pbx1;Pbx1;Pbx1;Pbx1;Pbx1;Pbx1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,84,18514,ENSMUSG00000052534,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23056,cg25165498,0.0000823,0.00000838,9.828402902,5.06E-20,gain,yes,-0.0000474,0.0000142,-3.329718505,0.000974256,neg,ns,-0.007482629,0.004168337,-1.795111414,0.073609922,neg,ns,1.133063645,0.000304362,0.000143349,2.123228033,0.034526734,pos,ns,0.813511289,Taok3,Taok3_fiveUTR,5,117241080,117241129,117241128,117241129,50,-,TTATCCATTTCTGCAGGATCATGTATTCATAAGGGATGAGGCGGGCCACG,5' UTR,5,117120129,117275217,155089,1,Taok3-203,120951,Taok3-203;Taok3-210;Taok3-201;Taok3-205;Taok3-208;Taok3-202,Taok3;Taok3;Taok3;Taok3;Taok3;Taok3,0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,11,20,330177,ENSMUSG00000061288,conserved gene and region,5,117241107,117241224,118,*,118,13,0.661016949,1.011206328,0.110169492,8.62E-11,CpGisland,TRUE,U10,Tr-S
27504,cg19827223,0.0000458,0.0000197,2.318624131,0.0210656,gain,ns,0.000111698,0.0000335,3.329573475,0.000974746,pos,ns,0.024525759,0.009828209,2.49544531,0.013099619,pos,ns,1.882741329,0.0000736,0.000337991,0.217818379,0.827713928,pos,ns,0.490594181,Pbx1,Pbx1_Intergenic_upstream,1,168676840,168676889,168676888,168676889,50,-,TTCTCTCCTCCTCATGTAATTTGCATTAATAAAGAGGCTGTTCCTTGTCG,Distal Intergenic,1,168119364,168432270,312907,2,Pbx1-208,-244619,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,17,84,18514,ENSMUSG00000052534,conserved gene and region,1,168676888,168677048,161,*,161,10,0.527950311,0.897435897,0.062111801,0.00000521,CpGisland,TRUE,U15,NS
7905,cg20990500,0.00000526,0.00000268,1.962128637,0.050641873,gain,ns,-0.0000151,0.00000455,-3.329388117,0.000975372,neg,ns,0.004019509,0.001333001,3.015383489,0.002778746,pos,ns,2.556151149,-0.000159065,0.0000458,-3.46987692,0.000594493,neg,ns,0.917871189,Ddx6,Ddx6_Exon,9,44631413,44631462,44631413,44631414,50,-,CGAAATGGCTTATGCCGCAATCTTGTTTGCACTGGTAAGTATTTTTGTAT,"Exon (Ddx6-201/Ddx6, exon 11 of 14)",9,44604892,44640731,35840,1,Ddx6-201,26521,Ddx6-201;Ddx6-203;Ddx6-202,Ddx6;Ddx6;Ddx6,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,13209,ENSMUSG00000032097,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1375,cg15391710,-0.0000177,0.00000754,-2.344361371,0.019690681,loss,ns,0.0000426,0.0000128,3.32843913,0.000978585,pos,ns,0.001916708,0.003753905,0.510590501,0.610001219,pos,ns,0.214669297,-0.000127693,0.000129096,-0.989128144,0.32337185,neg,ns,0.844373249,Cadps,Cadps_threeUTR,14,12467087,12467136,12467135,12467136,50,+,TTGCACCTCTAAGGCTGCATCCATGTCTACTGCAAAGAGTGACAGGAACG,3' UTR,14,12372563,12823053,450491,2,Cadps-210,355917,Cadps-210;Cadps-202;Cadps-203;Cadps-204;Cadps-201;Cadps-208;Cadps-206;Cadps-209,Cadps;Cadps;Cadps;Cadps;Cadps;Cadps;Cadps;Cadps,0;0;0;0;0;0;0;7391,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,8,34,27062,ENSMUSG00000054423,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4200,cg14570758,-0.00000231,0.00000554,-0.416493765,0.677336951,loss,ns,-0.0000314,0.00000942,-3.328334786,0.000978939,neg,ns,0.010666071,0.00275969,3.864952109,0.000135357,pos,ns,3.868520414,-0.000490538,0.0000949,-5.16869707,0.000000423,neg,yes,0.907079005,Tasor,Tasor_threeUTR,14,27480664,27480713,27480712,27480713,50,+,TTTGGAGCTGGGAGTTGGGATTTCCCAACATTAAACGTGAACACATTTCG,3' UTR,14,27428834,27483555,54722,1,Tasor-201,51830,Ccdc66-202;Ccdc66-203;Ccdc66-201;Tasor-201;Tasor-204,Ccdc66;Ccdc66;Ccdc66;Tasor;Tasor,27747;3162;27732;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,3,218850,ENSMUSG00000040651,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15562,cg16554380,0.00000269,0.00000575,0.467482924,0.640482848,gain,ns,0.0000325,0.00000977,3.328296442,0.000979069,pos,ns,0.005809918,0.002863274,2.029117428,0.043300533,pos,ns,1.363506757,-0.0000615,0.0000985,-0.624618784,0.532680729,neg,ns,0.936746772,Adgrl3,Adgrl3_threeUTR,5,81794304,81794353,81794352,81794353,50,+,TACTCTACCACTGAATGGTAACCATGGCAATAGTTACAGCATTGCCAGCG,3' UTR,5,81020571,81796634,776064,1,Adgrl3-223,773733,Adgrl3-223;Adgrl3-203;Adgrl3-211;Adgrl3-217;Adgrl3-232;Adgrl3-207;Adgrl3-205;Adgrl3-206;Adgrl3-208;Adgrl3-212;Adgrl3-213;Adgrl3-214;Adgrl3-215;Adgrl3-216;Adgrl3-209;Adgrl3-218;Adgrl3-219;Adgrl3-204;Adgrl3-210;Adgrl3-201;Adgrl3-202;Adgrl3-220;Adgrl3-229;Adgrl3-235,Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,13,319387,ENSMUSG00000037605,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10739,cg26944298,-0.00000179,0.00000305,-0.585387301,0.558713205,loss,ns,-0.0000172,0.00000518,-3.328267125,0.000979168,neg,ns,-0.002081509,0.001517981,-1.37123503,0.171293487,neg,ns,0.76625915,0.00000875,0.0000522,0.167702589,0.866926609,pos,ns,0.929320224,Uimc1,Uimc1_Exon,13,55075831,55075880,55075879,55075880,50,-,AAACACTGGCTGGCTTGACTGGTCCCAGCTTCCTGAGCTGCCAGAGACCG,"Exon (Uimc1-201/Uimc1, exon 6 of 15)",13,55027880,55100295,72416,2,Uimc1-201,24415,Uimc1-201;Uimc1-204;Uimc1-207;Uimc1-202;Uimc1-206;Uimc1-205,Uimc1;Uimc1;Uimc1;Uimc1;Uimc1;Uimc1,0;0;0;0;0;10312,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,20184,ENSMUSG00000025878,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22970,cg24431755,0.00000443,0.00000476,0.932478008,0.351815218,gain,ns,-0.0000269,0.00000808,-3.328187822,0.000979437,neg,ns,0.002599637,0.002366954,1.098304556,0.272923822,pos,ns,0.563958555,-0.000147526,0.0000814,-1.812369408,0.070896467,neg,ns,0.897881181,Cnot2,Cnot2_threeUTR,10,116506250,116506299,116506250,116506251,50,+,CGAGAAGGCTGCTGCTTTGGCATACATATTATGCTTGGCGAGCTTCTGTT,3' UTR,10,116485161,116581511,96351,2,Cnot2-210,75212,Cnot2-210;Cnot2-204;Cnot2-212;Cnot2-203;Cnot2-202;Cnot2-213;Cnot2-209;Cnot2-214;Cnot2-215;Cnot2-205;Cnot2-207;Cnot2-211;Cnot2-217;Cnot2-216;Cnot2-206;Cnot2-201;Cnot2-208,Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,9,15,72068,ENSMUSG00000020166,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19612,cg19670346,0.0000201,0.0000054,3.714696615,0.000241249,gain,ns,-0.0000305,0.00000918,-3.328055694,0.000979886,neg,ns,-0.003235695,0.002688376,-1.203587182,0.229667458,neg,ns,0.638900536,0.000184601,0.0000925,1.99670057,0.046731849,pos,ns,0.878723055,Klf12,Klf12_Exon,14,100109765,100109814,100109813,100109814,50,-,GCTTACCCCTTGTTCAGATTCCAAAAGCTCTGTTTTGACTCTGACTGCCG,"Exon (Klf12-205/Klf12, exon 3 of 8)",14,99870632,100284679,414048,2,Klf12-205,174865,Klf12-205;Klf12-201;Klf12-204,Klf12;Klf12;Klf12,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,11,16597,ENSMUSG00000072294,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23614,cg07431199,0.0000348,0.00000828,4.204738204,0.0000342,gain,ns,0.0000468,0.0000141,3.327948732,0.000980249,pos,ns,0.01563704,0.00412331,3.792351204,0.000179371,pos,ns,3.746247627,-0.000273862,0.0001418,-1.931318786,0.054355067,neg,ns,0.101959597,Dll4,Dll4_Promoter,2,119322616,119322665,119322616,119322617,50,-,CGGCCTCATTTCAATGTGAATGGATCGAATGGAGCAGCCATGTGGCAGCA,Promoter (3-4kb),2,119325784,119335962,10179,1,Dll4-201,-3168,Dll4-201,Dll4,0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,8,20,54485,ENSMUSG00000027314,conserved gene and region,2,119322514,119322642,129,*,129,12,0.705426357,0.752186589,0.093023256,4.32E-09,CpGisland,TRUE,U3,Pr-B
21039,cg02409454,0.0000163,0.00000985,1.656946689,0.098541937,gain,ns,0.0000557,0.0000167,3.327089348,0.000983172,pos,ns,0.003961852,0.004904195,0.807849558,0.419796647,pos,ns,0.376961035,-0.000192181,0.000168655,-1.139490039,0.255378522,neg,ns,0.568538126,Vrk1,Vrk1_Intron,12,106143168,106143217,106143168,106143169,50,+,CGACACTTGATCATTTACATCAAGTTGACATTCGCAGAGTTTACTCAGGG,"Intron (Gm47646-201/Gm47646-201, intron 1 of 1)",12,106030717,106075409,44693,1,Vrk1-204,112451,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,37,22367,ENSMUSG00000021115,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2998,cg26918276,-0.0000102,0.00000653,-1.563206434,0.11902428,loss,ns,0.0000369,0.0000111,3.326799723,0.000984158,pos,ns,0.004722156,0.003251822,1.45215729,0.147469214,pos,ns,0.831298636,-0.000195028,0.00011183,-1.743968401,0.082155825,neg,ns,0.859755508,Lrmda,Lrmda_Intron,14,22270547,22270596,22270547,22270548,50,+,CGTGCTGTGAGGTTCAATTCACTGAAAGGCCAAATTATCTTCAACTACAT,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,250835,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206,Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2162,cg18371171,0.0000205,0.00000416,4.931356526,0.00000133,gain,yes,0.0000235,0.00000707,3.325026086,0.000990221,pos,ns,0.008822797,0.00207194,4.258229452,0.0000273,pos,ns,4.563068081,-0.000147991,0.0000713,-2.076959923,0.038628564,neg,ns,0.073860782,Kdm6a,Kdm6a_fiveUTR,X,18162617,18162666,18162617,18162618,50,-,CGTGGGGTTCGCTGTGTGACACAATTACAACAACTTTGTGCTGGTGCCGG,Promoter (<=1kb),20,18162637,18236715,74079,1,Kdm6a-209,0,Kdm6a-201;Kdm6a-202;Kdm6a-209;Kdm6a-205;Kdm6a-203,Kdm6a;Kdm6a;Kdm6a;Kdm6a;Kdm6a,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,14,22289,ENSMUSG00000037369,conserved gene but different region,X,18162378,18162803,426,*,426,38,0.657276995,0.82697318,0.089201878,3.42E-27,CpGisland,TRUE,U1,Pr-A
25847,cg00449321,0.000025,0.0000187,1.334219175,0.183111299,gain,ns,0.000105889,0.0000319,3.324415046,0.000992318,pos,ns,0.007341854,0.009331512,0.786780775,0.432011265,pos,ns,0.364504928,0.0000231,0.00032091,0.071906412,0.942722756,pos,ns,0.701227641,Tas1r2,Tas1r2_Intergenic_downstream,4,139725269,139725318,139725269,139725270,50,-,CGGAGACCTAGAAGGCGGCCTATGTTTTTTAAAAAGCAGCGGACAAAAAT,Distal Intergenic,4,139653549,139669855,16307,1,Tas1r2-202,71769,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,83770,ENSMUSG00000028738,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15069,cg02106685,-0.0000161,0.0000045,-3.569432339,0.000414442,loss,ns,0.0000254,0.00000765,3.324344803,0.00099256,pos,ns,-0.001009619,0.002240516,-0.450619071,0.652579121,neg,ns,0.185366826,0.000097,0.0000771,1.259415549,0.20882769,pos,ns,0.80415059,Kcne4,Kcne4_Exon,1,78817789,78817838,78817789,78817790,50,+,CGGAATCATGCTGGGCTACATGAAATCCAAGAGGCGGGAGAAGAAGTCCA,"Exon (Kcne4-201/Kcne4, exon 2 of 2)",1,78816758,78820028,3271,1,Kcne4-201,1031,Kcne4-201;Kcne4-202,Kcne4;Kcne4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,57814,ENSMUSG00000047330,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19864,cg19526275,0.00000865,0.00000361,2.394196115,0.017250735,gain,ns,-0.0000204,0.00000614,-3.323699225,0.00099478,neg,ns,0.005937736,0.001798268,3.301919926,0.001072449,pos,ns,2.969623487,-0.000338697,0.0000618,-5.476794829,8.96E-08,neg,yes,0.943083423,Stard10,Stard10_threeUTR,7,101343963,101344012,101343963,101343964,50,-,CGGGCTACCTCATCCAGAGCACAGGGCCCAAGAGCTGCGTCATCACCTAC,3' UTR,7,101317086,101346626,29541,1,Stard10-202,26877,Arap1-204;Stard10-202;Stard10-203;Stard10-201;Stard10-211;Stard10-205;Stard10-210;Stard10-204;Stard10-206;Stard10-207;Stard10-208;Stard10-209,Arap1;Stard10;Stard10;Stard10;Stard10;Stard10;Stard10;Stard10;Stard10;Stard10;Stard10;Stard10,-4055;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,5,6,56018,ENSMUSG00000030688,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
2257,cg13851508,0.0000231,0.00000568,4.070752416,0.0000595,gain,ns,0.0000321,0.00000965,3.323409572,0.000995778,pos,ns,0.011840551,0.00282814,4.186691694,0.0000369,pos,ns,4.432715277,-0.00010028,0.0000973,-1.031058369,0.303317188,neg,ns,0.194678342,Meis1,Meis1_Intergenic_downstream,11,18874548,18874597,18874596,18874597,50,+,ATTAAAGGGGACAAACAGTACTTTGGCTTCCTCTGACCCCAGAATGCACG,Distal Intergenic,11,18880668,19012002,131335,2,Meis1-203,137405,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,88,17268,ENSMUSG00000020160,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
1881,cg17663591,-0.0000165,0.00000739,-2.226171784,0.026721261,loss,ns,0.0000417,0.0000126,3.322842914,0.000997732,pos,ns,0.019803708,0.0036789,5.383051751,0.000000145,pos,ns,6.839203214,-0.000656764,0.000126517,-5.191109193,0.000000379,neg,yes,0.810196616,Csmd1,Csmd1_threeUTR,8,15892832,15892881,15892880,15892881,50,+,ATTCTTCATAAAAAATATATCTCTGTACAAAAAGGTCTTTCGCACCTACG,3' UTR,8,15892537,17535281,1642745,2,Csmd1-201,1642400,Csmd1-201;Csmd1-203,Csmd1;Csmd1,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,94109,ENSMUSG00000060924,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U14,Hc-H
11355,cg15915945,-0.0000246,0.00000469,-5.255466303,0.000000275,loss,yes,-0.0000265,0.00000796,-3.322627883,0.000998475,neg,ns,0.002690607,0.002333281,1.153143303,0.249739921,pos,ns,0.602512031,-0.000344432,0.0000802,-4.292445332,0.0000237,neg,ns,0.902403421,Clk3,Clk3_Exon,9,57758686,57758735,57758734,57758735,50,-,ACACTCCGGCTGCTGCGCTTACTGCTCTGTTGGCTTCTCTGCATGCACCG,"Exon (Clk3-207/Clk3, exon 3 of 12)",9,57750624,57765103,14480,2,Clk3-207,6368,Clk3-207;Clk3-201;Clk3-205;Clk3-203;Clk3-206;Clk3-209;Clk3-208;Clk3-204,Clk3;Clk3;Clk3;Clk3;Clk3;Clk3;Clk3;Clk3,0;0;0;0;-3365;0;5573;6118,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,14,102414,ENSMUSG00000032316,conserved gene and region,9,57758611,57758779,169,*,169,14,0.615384615,0.908602151,0.082840237,7.36E-10,CpGisland,TRUE,U12,Tr-I
19844,cg07323054,0.000000434,0.00000146,0.298335362,0.765647083,gain,ns,0.00000821,0.00000247,3.322514158,0.000998868,pos,ns,0.000826366,0.000724262,1.140976495,0.254760358,pos,ns,0.593868149,0.00003,0.0000249,1.204523928,0.229305946,pos,ns,0.957822989,Nlgn3,Nlgn3_Exon,X,101303050,101303099,101303098,101303099,50,-,TAGTTTTTTATTCATTTTACAGTAAAGCGGATTTCCAAGGAATGCGCCCG,"Exon (Gm21986-201/Gm21986-201, exon 6 of 11)",20,101299168,101325963,26796,1,Nlgn3-202,3882,Nlgn3-202;Nlgn3-203;Nlgn3-206;Nlgn3-201;Nlgn3-205,Nlgn3;Nlgn3;Nlgn3;Nlgn3;Nlgn3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,16,245537,ENSMUSG00000031302,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18403,cg04365423,0.0000111,0.0000144,0.773789704,0.439644843,gain,ns,0.000081,0.0000244,3.322412621,0.000999219,pos,ns,0.003494365,0.007144927,0.489069461,0.625138359,pos,ns,0.204023852,-0.0000556,0.000245713,-0.226306111,0.821112488,neg,ns,0.760403576,Arhgef9,Arhgef9_fiveUTR,X,95130946,95130995,95130994,95130995,50,+,ACTCCCGGTTGGCCATGGTGACGTGATCCCATACTGCCTCAGCACTAACG,5' UTR,20,95048935,95166361,117427,2,Arhgef9-202,35366,Arhgef9-202;Arhgef9-217;Arhgef9-205;Arhgef9-207;Arhgef9-210;Arhgef9-203;Arhgef9-209;Arhgef9-206;Arhgef9-208;Arhgef9-204;Arhgef9-216;Arhgef9-219;Arhgef9-201;Arhgef9-218;Arhgef9-220;Arhgef9-213;Arhgef9-214,Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,8,14,236915,ENSMUSG00000025656,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1289,cg17725572,0.00000213,0.00000281,0.757964851,0.449047832,gain,ns,-0.0000159,0.00000478,-3.32191817,0.001000929,neg,ns,0.000283477,0.001399558,0.202547832,0.839621336,pos,ns,0.075916534,-0.000123175,0.0000481,-2.559169213,0.010966759,neg,ns,0.951784687,Ptprg,Ptprg_threeUTR,14,12226333,12226382,12226333,12226334,50,+,CGGCACTTTCAGTGTCCCAAATGGCCTAACCCAGATGCCCCCATAAGTAG,3' UTR,14,11553532,12242041,688510,1,Ptprg-201,672801,Ptprg-201;Ptprg-204;Ptprg-202;Ptprg-203,Ptprg;Ptprg;Ptprg;Ptprg,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,23,19270,ENSMUSG00000021745,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19863,cg08191439,0.0000103,0.00000311,3.296157841,0.00109392,gain,ns,-0.0000176,0.00000529,-3.32067369,0.001005247,neg,ns,0.002850828,0.001548598,1.840909173,0.066590357,pos,ns,1.17658866,-0.000214992,0.0000533,-4.036933628,0.0000683,neg,ns,0.939876032,Stard10,Stard10_threeUTR,7,101343944,101343993,101343944,101343945,50,-,CGAGCTGTGTCCATCCAGACGGGCTACCTCATCCAGAGCACAGGGCCCAA,3' UTR,7,101317086,101346626,29541,1,Stard10-202,26858,Arap1-204;Stard10-202;Stard10-203;Stard10-201;Stard10-211;Stard10-205;Stard10-210;Stard10-204;Stard10-206;Stard10-207;Stard10-208;Stard10-209,Arap1;Stard10;Stard10;Stard10;Stard10;Stard10;Stard10;Stard10;Stard10;Stard10;Stard10;Stard10,-4074;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,5,6,56018,ENSMUSG00000030688,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
7229,cg11628475,-0.0000254,0.0000104,-2.448870374,0.014884054,loss,ns,0.0000584,0.0000176,3.319856858,0.001008091,pos,ns,0.014098393,0.005155847,2.734447609,0.00660791,pos,ns,2.179935862,-0.000519561,0.000177309,-2.930257577,0.003638355,neg,ns,0.827268144,Gm5267,Gm5267_Intergenic_upstream,1,41674518,41674567,41674566,41674567,50,+,CTGCAAAGAATTTAGAAACATTTCAATAAACATACTTGCAAATATTTTCG,Distal Intergenic,1,42103289,42104333,1045,1,Gm5267-201,-428722,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,15,383634,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10871,cg14933432,-0.0000639,0.0000123,-5.205264653,0.000000353,loss,yes,0.0000692,0.0000209,3.31972335,0.001008556,pos,ns,-0.006287867,0.006108478,-1.029367132,0.304109651,neg,ns,0.516969797,0.000394273,0.00021007,1.876861997,0.061476117,pos,ns,0.782372844,Neurod6,Neurod6_Intergenic_upstream,6,55700661,55700710,55700661,55700662,50,-,CGGTTGGGCTAATTAGAATACCAATTAGAACTGGCAGGGCTATCGTTAAT,Distal Intergenic,6,55677822,55681263,3442,2,Neurod6-201,-19447,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,16,11922,ENSMUSG00000037984,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9837,cg01340195,-0.00000512,0.00000427,-1.198764261,0.231535187,loss,ns,-0.0000241,0.00000725,-3.318721447,0.001012056,neg,ns,-0.005590584,0.002124316,-2.631710545,0.008920636,neg,ns,2.04960416,0.000222084,0.0000731,3.039959964,0.002567793,pos,ns,0.8922321,Tbc1d5,Tbc1d5_Intron,17,51048780,51048829,51048828,51048829,50,-,TCTAAATCAATAATCAGCACAGCATGCTTCATTAACAGTGACCAATCACG,"Intron (Tbc1d5-201/Tbc1d5, intron 2 of 21)",17,50733124,51179168,446045,2,Tbc1d5-201,130339,Tbc1d5-201;Tbc1d5-207;Tbc1d5-205;Tbc1d5-208;Tbc1d5-203;Tbc1d5-202;Tbc1d5-206;Tbc1d5-209,Tbc1d5;Tbc1d5;Tbc1d5;Tbc1d5;Tbc1d5;Tbc1d5;Tbc1d5;Tbc1d5,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,14,72238,ENSMUSG00000023923,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17427,cg26283807,0.00000433,0.0000044,0.983846569,0.325958188,gain,ns,-0.0000248,0.00000748,-3.318366812,0.001013297,neg,ns,-0.003790154,0.002191359,-1.729590809,0.084698807,neg,ns,1.072122707,-0.00025258,0.0000754,-3.351612067,0.000902882,neg,ns,0.878906912,Scaf4,Scaf4_Exon,16,90242662,90242711,90242710,90242711,50,+,TGGGATTTCCAATAGATAAGTCTTTTGTAGTGTCTTCATTTATACCAGCG,"Exon (Scaf4-201/Scaf4, exon 19 of 20)",16,90228951,90284308,55358,2,Scaf4-202,41597,Scaf4-202;Scaf4-208;Scaf4-201;Scaf4-205;Scaf4-203,Scaf4;Scaf4;Scaf4;Scaf4;Scaf4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,224432,ENSMUSG00000022983,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22963,cg24770551,0.00000638,0.0000131,0.485110741,0.627940424,gain,ns,0.0000741,0.0000223,3.317989766,0.001014618,pos,ns,-0.00192264,0.006542904,-0.293851241,0.76906822,neg,ns,0.114035134,0.000273987,0.00022501,1.217667935,0.224276227,pos,ns,0.405703417,Cdc14a,Cdc14a_fiveUTR,3,116422589,116422638,116422589,116422590,50,+,CGATGGAGAAATAGTGGGTATTTACTGTGCTTTTTGGTCTATTCCTTAAA,5' UTR,3,116272553,116423986,151434,2,Cdc14a-202,1348,Cdc14a-202;Cdc14a-201;Cdc14a-208;Cdc14a-206;Cdc14a-203;Cdc14a-205;Cdc14a-204,Cdc14a;Cdc14a;Cdc14a;Cdc14a;Cdc14a;Cdc14a;Cdc14a,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,1,229776,ENSMUSG00000033502,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9523,cg12923481,-0.00000512,0.00000564,-0.907999333,0.364583888,loss,ns,0.0000318,0.00000957,3.317281398,0.001017105,pos,ns,0.002857863,0.00280482,1.018911542,0.309039483,pos,ns,0.509986031,-0.000062,0.0000965,-0.642561464,0.520983628,neg,ns,0.919122208,Grik2,Grik2_threeUTR,10,49100984,49101033,49100984,49100985,50,-,CGGCATGAGGTAACTCATTTTATTTTGCACAGGTTGCATATTTCCACAGG,3' UTR,10,49094833,49788766,693934,2,Grik2-207,687733,Grik2-207;Grik2-203;Grik2-202;Grik2-205;Grik2-209;Grik2-204;Grik2-211;Grik2-201,Grik2;Grik2;Grik2;Grik2;Grik2;Grik2;Grik2;Grik2,0;0;0;0;0;0;2898;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,12,14806,ENSMUSG00000056073,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27121,cg00213533,-0.0000216,0.00000996,-2.172003436,0.03061314,loss,ns,0.0000561,0.0000169,3.315625259,0.001022942,pos,ns,0.015083613,0.004958073,3.04223295,0.002549046,pos,ns,2.593622332,-0.000512226,0.000170508,-3.00412317,0.002880615,neg,ns,0.76478636,Gm15168,Gm15168_Intergenic_upstream,X,158614615,158614664,158614615,158614616,50,-,CGTCAGTACTACATTGAGAACCTCCCACTCAGAGACTGTATTTAGGAAAG,Distal Intergenic,20,158503317,158503901,585,2,Gm15168-201,-110763,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13323,cg19802820,-0.0000236,0.0000218,-1.084576558,0.278951994,loss,ns,-0.0001225,0.000037,-3.315211789,0.001024403,neg,ns,0.071362424,0.010825317,6.592178753,1.86E-10,pos,ns,9.729446781,-0.001308354,0.000372282,-3.514417852,0.000506393,neg,ns,0.705739133,Bin3,Bin3_Intron,14,70102368,70102417,70102368,70102369,50,-,CGTAGAGCCATCATGGGAGGCTGATGCCCAAGGTCAAGTTCACCAAGTAC,"Intron (Bin3-201/Bin3, intron 1 of 8)",14,70100105,70138206,38102,1,Bin3-201,2263,Bin3-201;Bin3-203;Bin3-202;Bin3-205;Bin3-204,Bin3;Bin3;Bin3;Bin3;Bin3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,4,57784,ENSMUSG00000022089,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U5,En-Sd
12726,cg26400593,0.0000224,0.00000347,6.473584821,3.74E-10,gain,yes,-0.0000195,0.00000589,-3.314478451,0.001027001,neg,ns,0.003230678,0.001724895,1.872970742,0.06201338,pos,ns,1.207514594,-0.000239985,0.0000593,-4.045665559,0.0000659,neg,ns,0.08427111,Rsrc1,Rsrc1_fiveUTR,3,66981494,66981543,66981542,66981543,50,-,CTCCTTCTTCTCCTTCACTTTCTGGTCAAAAGACTTGGAGACGAACGCCG,Promoter (<=1kb),3,66981390,67356559,375170,1,Rsrc1-206,104,Rsrc1-206;Rsrc1-207;Rsrc1-203;Rsrc1-208;Rsrc1-202;Rsrc1-201;Rsrc1-209;Rsrc1-205;Rsrc1-204;Shox2-203;Shox2-201;Shox2-202;Shox2-204;Shox2-205,Rsrc1;Rsrc1;Rsrc1;Rsrc1;Rsrc1;Rsrc1;Rsrc1;Rsrc1;Rsrc1;Shox2;Shox2;Shox2;Shox2;Shox2,0;-4127;0;0;0;0;0;0;-4435;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,37,66880,ENSMUSG00000034544,conserved gene and region,3,66981535,66981613,79,*,79,13,0.70886076,1.426388889,0.164556962,2.70E-13,CpGisland,TRUE,U3,Pr-B
6736,cg03624519,0.00000771,0.00000598,1.290311994,0.197903956,gain,ns,-0.0000336,0.0000102,-3.313868168,0.001029168,neg,ns,0.002589611,0.002974343,0.870649618,0.384619198,pos,ns,0.414969042,-0.000208697,0.000102287,-2.040302667,0.042167319,neg,ns,0.878015234,Gsk3b,Gsk3b_threeUTR,16,38243449,38243498,38243449,38243450,50,-,CGAGCTTTTTAAAGCCATATAGTTTTAACTCTGTACAGTAGGTACCGGCC,3' UTR,16,38089001,38246084,157084,1,Gsk3b-201,154448,Gsk3b-201;Gsk3b-202;Gsk3b-205;Nr1i2-201,Gsk3b;Gsk3b;Gsk3b;Nr1i2,0;0;0;51326,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,11,56637,ENSMUSG00000022812,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16648,cg01141580,0.0000384,0.00000406,9.457688562,8.15E-19,gain,yes,-0.0000229,0.0000069,-3.313844838,0.001029251,neg,ns,-0.003702095,0.00202074,-1.832049451,0.06790333,neg,ns,1.16810893,-0.000000527,0.0000695,-0.007577236,0.993959172,neg,ns,0.099348088,Tbx2,Tbx2_fiveUTR,11,85832591,85832640,85832591,85832592,50,-,CGTCATTGGTTAATATTTTATTCTGTTGACATGTTTTCTTACTGCTGAGG,Promoter (<=1kb),11,85832551,85841948,9398,1,Tbx2-201,40,Tbx2-201,Tbx2,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,12,14,21385,ENSMUSG00000000093,mapped to different genes,11,85832024,85832592,569,*,569,52,0.734622144,0.677380952,0.091388401,1.46E-37,CpGisland,TRUE,U3,Pr-B
26954,cg12381692,0.0000144,0.0000079,1.826400953,0.068751528,gain,ns,0.0000445,0.0000134,3.31352795,0.001030377,pos,ns,0.004135877,0.003931091,1.052093742,0.293575941,pos,ns,0.532279539,-0.000174993,0.00013519,-1.294425715,0.196481795,neg,ns,0.783474199,Prkcz,Prkcz_Exon,4,155293194,155293243,155293194,155293195,50,-,CGTTCTTGTCGTCTACTGGAGGCTCTTGGGAAGGCATGACAGAATCCTGC,"Exon (Prkcz-202/Prkcz, exon 4 of 15)",4,155260129,155345772,85644,2,Prkcz-202,52529,Prkcz-202;Prkcz-201;Prkcz-206;Prkcz-204;Prkcz-208;Prkcz-205;Prkcz-210,Prkcz;Prkcz;Prkcz;Prkcz;Prkcz;Prkcz;Prkcz,0;0;0;0;0;7928;51497,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,18762,ENSMUSG00000029053,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18919,cg14497036,0.000232199,0.0000235,9.871343947,3.66E-20,gain,yes,-0.000132358,0.00004,-3.312115988,0.001035411,neg,ns,-0.032896841,0.011707421,-2.809913554,0.005270509,neg,ns,2.278147425,0.000270585,0.000402617,0.67206568,0.50204245,pos,ns,0.373063947,Antxr2,Antxr2_Intron,5,97935169,97935218,97935169,97935170,50,-,CGATCTGTACCTGCTGTCCCCTGTCACTCCCTGGAAACTTGGCGGCAGAT,"Intron (Antxr2-201/Antxr2, intron 16 of 16)",5,97882783,98030962,148180,2,Antxr2-201,95744,Antxr2-201;Antxr2-202,Antxr2;Antxr2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,4,71914,ENSMUSG00000029338,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11231,cg16052035,0.000035,0.0000132,2.651587822,0.008423315,gain,ns,0.0000743,0.0000224,3.312027493,0.001035728,pos,ns,0.019743532,0.006575564,3.002560819,0.002895017,pos,ns,2.538348908,-0.000395438,0.000226133,-1.748695458,0.081333463,neg,ns,0.551883745,Nr4a2,Nr4a2_threeUTR,2,57107927,57107976,57107927,57107928,50,-,CGGAGCCAAAATGCCCTTTCAGGTTCTGCCTGCAGGTTAGGAAATAGCAA,3' UTR,2,57106830,57115038,8209,2,Nr4a2-201,7062,Nr4a2-201;Nr4a2-203;Nr4a2-206;Nr4a2-202;Nr4a2-205,Nr4a2;Nr4a2;Nr4a2;Nr4a2;Nr4a2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,25,18227,ENSMUSG00000026826,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
17186,cg08669389,0.00000566,0.00000704,0.80370192,0.422184984,gain,ns,0.0000396,0.000012,3.310368231,0.001041674,pos,ns,-0.002144952,0.003505248,-0.61192575,0.541035416,neg,ns,0.266774306,0.000189535,0.000120545,1.572316057,0.11689731,pos,ns,0.902293352,Ano4,Ano4_threeUTR,10,89084565,89084614,89084565,89084566,50,-,CGGCGGGGCAGGTAATAGATTTTTCTCCTGGAAGAACAGCAAAAATGAAG,3' UTR,10,88948994,89257790,308797,2,Ano4-206,173176,Ano4-206;Ano4-204;Ano4-208;Ano4-210;Ano4-203;Ano4-205;Ano4-212;Ano4-202;Ano4-209,Ano4;Ano4;Ano4;Ano4;Ano4;Ano4;Ano4;Ano4;Ano4,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,8,9,320091,ENSMUSG00000035189,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
500,cg09681292,-0.00001,0.00000475,-2.111935133,0.03549176,loss,ns,0.0000267,0.00000807,3.309867657,0.001043475,pos,ns,0.005896482,0.00236469,2.493553416,0.013168223,pos,ns,1.880472821,-0.000239941,0.0000813,-2.950521341,0.00341414,neg,ns,0.905819117,St18,St18_Intron,1,6605100,6605149,6605148,6605149,50,+,CTGCTTCTGCAACAATTACTGGTCAATTGCAAGTGATTATAATGGCACCG,"Intron (St18-208/St18, intron 2 of 23)",1,6487231,6860934,373704,1,St18-208,117869,St18-208;St18-204,St18;St18,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,20,240690,ENSMUSG00000033740,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5817,cg14127056,-0.00001,0.00000686,-1.459340494,0.14548396,loss,ns,-0.0000385,0.0000117,-3.307523229,0.001051945,neg,ns,0.013729092,0.003413403,4.022112213,0.0000725,pos,ns,4.139580707,-0.000821008,0.000117387,-6.994052053,1.65E-11,neg,yes,0.789596942,Tnks,Tnks_Intron,8,34890672,34890721,34890720,34890721,50,+,CGTGACGTTAGCCAGCTTGTGAAGGCAGCATCACCAGTGCCTTGGAGACG,"Intron (Tnks-201/Tnks, intron 3 of 26)",8,34826460,34965690,139231,2,Tnks-201,74969,Tnks-201;Tnks-203,Tnks;Tnks,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,6,21951,ENSMUSG00000031529,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26808,cg18708443,0.0000488,0.00000467,10.46535078,3.78E-22,gain,yes,-0.0000262,0.00000793,-3.306075103,0.001057209,neg,ns,0.001493097,0.002323023,0.642738645,0.520868787,pos,ns,0.283271667,-0.00000184,0.0000799,-0.023055591,0.981620763,neg,ns,0.901220034,Zzz3,Zzz3_Exon,3,152427330,152427379,152427378,152427379,50,+,GGCTGCTTCCCGATCTACTCGTGTTACAAGATCAACAGTGGGGTTAAACG,"Exon (Zzz3-206/Zzz3, exon 4 of 4)",3,152395473,152459474,64002,1,Zzz3-204,31857,Zzz3-204;Zzz3-206;Zzz3-202;Zzz3-207;Zzz3-208;Zzz3-210;Zzz3-201;Zzz3-203,Zzz3;Zzz3;Zzz3;Zzz3;Zzz3;Zzz3;Zzz3;Zzz3,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,7,108946,ENSMUSG00000039068,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19468,cg10007431,-0.00000639,0.00000682,-0.936567772,0.349709977,loss,ns,-0.0000383,0.0000116,-3.305141433,0.001060615,neg,ns,0.009617852,0.003393388,2.834291755,0.00489417,pos,ns,2.310320944,-0.00023581,0.000116698,-2.020678181,0.044172563,neg,ns,0.689254615,Foxn3,Foxn3_Intron,12,99376061,99376110,99376109,99376110,50,+,AACTCCGTTGCTAAGGCAACTGCTTACTTTCCATATCAACTGCAAACTCG,"Intron (Foxn3-201/Foxn3, intron 2 of 5)",12,99190078,99393797,203720,2,Foxn3-201,17687,Foxn3-201;Foxn3-209;Foxn3-202;Foxn3-207,Foxn3;Foxn3;Foxn3;Foxn3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,17,71375,ENSMUSG00000033713,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23666,cg10926100,0.00000546,0.0000031,1.763061638,0.078875312,gain,ns,-0.0000174,0.00000526,-3.304465059,0.00106309,neg,ns,-0.003177196,0.001541016,-2.061754268,0.04006444,neg,ns,1.397240925,0.000101588,0.000053,1.9169254,0.05616647,pos,ns,0.848178905,Erc1,Erc1_Exon,6,119713753,119713802,119713801,119713802,50,+,CTTTCTCTTAGTGCTTCTTCCAGCTCTTCAATCCTGTCATCCTTCTTACG,"Exon (Erc1-203/Erc1, exon 16 of 21)",6,119570796,119848150,277355,2,Erc1-203,134348,Erc1-203;Erc1-201;Erc1-211;Erc1-210;Erc1-206;Erc1-208;Erc1-209;Erc1-207;Erc1-212,Erc1;Erc1;Erc1;Erc1;Erc1;Erc1;Erc1;Erc1;Erc1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,111173,ENSMUSG00000030172,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21726,cg10236414,-0.00000447,0.00000915,-0.489007478,0.62518219,loss,ns,0.0000514,0.0000155,3.304323303,0.001063609,pos,ns,0.007746759,0.004554286,1.700982005,0.089949148,pos,ns,1.046002948,0.0000253,0.000156622,0.161521722,0.871787722,pos,ns,0.197874381,Slitrk1,Slitrk1_fiveUTR,14,108913329,108913378,108913377,108913378,50,+,TCCTGCTCGCCACAGACACAATTCAAGTTCATTTAGTGCTCCAATGTCCG,Promoter (<=1kb),14,108908800,108914158,5359,2,Slitrk1-201,780,Slitrk1-201,Slitrk1,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,7,17,76965,ENSMUSG00000075478,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
1925,cg26600422,-0.00000116,0.00000106,-1.096032719,0.273915189,loss,ns,0.00000596,0.0000018,3.303898457,0.001065167,pos,ns,0.001366654,0.000528113,2.587805609,0.01011363,pos,ns,1.995092931,-0.00000496,0.0000182,-0.273180121,0.784896661,neg,ns,0.967631649,Dnm1l,Dnm1l_Exon,16,16333898,16333947,16333946,16333947,50,-,GTACCCGCATCCATGAGATCAAGTTTAGTGATTACAGCTAGGGTTCTGCG,"Exon (Dnm1l-201/Dnm1l, exon 7 of 18)",16,16312230,16358959,46730,2,Dnm1l-201,25012,Dnm1l-201;Dnm1l-202;Dnm1l-203;Dnm1l-204;Dnm1l-207;Dnm1l-205,Dnm1l;Dnm1l;Dnm1l;Dnm1l;Dnm1l;Dnm1l,0;0;0;0;0;25004,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,74006,ENSMUSG00000022789,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13569,cg17526513,-0.00000152,0.00000874,-0.173797239,0.862138249,loss,ns,-0.000049,0.0000148,-3.30342632,0.0010669,neg,ns,0.005000931,0.00434979,1.149694899,0.251155743,pos,ns,0.600056886,-0.000404309,0.000149589,-2.702799471,0.007254829,neg,ns,0.437394751,Nr2f6,Nr2f6_threeUTR,8,71375808,71375857,71375808,71375809,50,-,CGGCCCAGCTTGTCCACCTGCTCCTGGAAGGCGCGCACCTGGTCCATGAA,3' UTR,8,71374123,71381906,7784,2,Nr2f6-204,6049,Nr2f6-204;Nr2f6-201;Nr2f6-206;Nr2f6-207;Nr2f6-208;Nr2f6-203;Nr2f6-202;Nr2f6-205;Ocel1-202;Ocel1-201;Ocel1-203;Ocel1-204,Nr2f6;Nr2f6;Nr2f6;Nr2f6;Nr2f6;Nr2f6;Nr2f6;Nr2f6;Ocel1;Ocel1;Ocel1;Ocel1,0;0;-18;-18;-18;0;0;0;4510;4469;0;3335,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,13864,ENSMUSG00000002393,conserved gene but different region,8,71375703,71376378,676,*,676,73,0.711538462,0.853623941,0.107988166,3.61E-58,CpGisland,TRUE,U4,Pr-F
4866,cg00019068,-0.0000169,0.00000245,-6.883045064,3.26E-11,loss,yes,0.0000137,0.00000416,3.302656219,0.001069733,pos,ns,0.002122635,0.001219319,1.740836167,0.08270446,pos,ns,1.082471068,0.00000832,0.0000419,0.198429278,0.842839279,pos,ns,0.940586729,Zbtb44,Zbtb44_Exon,9,31066900,31066949,31066900,31066901,50,-,CGTGCACCTGAGGAGTCTGAACCATGAAGCATCAGAGCTAGCAAACTACT,"Exon (Zbtb44-206/Zbtb44, exon 4 of 5)",9,31030644,31070233,39590,1,Zbtb44-205,36256,Zbtb44-205;Zbtb44-201;Zbtb44-206;Zbtb44-202;Zbtb44-204,Zbtb44;Zbtb44;Zbtb44;Zbtb44;Zbtb44,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,15,235132,ENSMUSG00000047412,conserved gene and region,9,31066713,31066901,189,*,189,12,0.486772487,1.07641196,0.063492064,0.00000032,CpGisland,TRUE,U10,Tr-S
169,cg07397105,0.0000378,0.0000106,3.571168516,0.000411813,gain,ns,-0.0000594,0.000018,-3.302604205,0.001069925,neg,ns,0.01555896,0.005270328,2.952180415,0.003396354,pos,ns,2.468986996,-0.000260993,0.000181246,-1.439989833,0.150879372,neg,ns,0.847539575,Mtmr3,Mtmr3_Exon,11,4485892,4485941,4485940,4485941,50,-,TTATCCACCTGCTCCCAGCTGGCTTCAGAGAAAATCTCTGTGCTGCAGCG,"Exon (Mtmr3-207/Mtmr3, exon 1 of 3)",11,4480868,4594815,113948,2,Mtmr3-202,108874,Mtmr3-202;Mtmr3-207;Mtmr3-201;Mtmr3-203;Mtmr3-205;Mtmr3-204,Mtmr3;Mtmr3;Mtmr3;Mtmr3;Mtmr3;Mtmr3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,4,74302,ENSMUSG00000034354,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10771,cg27378109,0.0000864,0.0000115,7.519346496,5.98E-13,gain,yes,-0.0000645,0.0000195,-3.302470131,0.001070419,neg,ns,0.027614976,0.005721447,4.826571801,0.00000218,pos,ns,5.660757297,-0.000556131,0.00019676,-2.826440029,0.005012627,neg,ns,0.834428854,Vti1a,Vti1a_Intron,19,55350745,55350794,55350793,55350794,50,-,GGCCCAGAAATAGCAATCAGCTGGGGAGCAGGATGACATGCCTCTTAGCG,"Intron (Vti1a-206/Vti1a, intron 3 of 7)",19,55316295,55577001,260707,1,Vti1a-206,34450,Vti1a-206;Vti1a-207;Vti1a-205;Vti1a-202;Vti1a-201,Vti1a;Vti1a;Vti1a;Vti1a;Vti1a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,32,53611,ENSMUSG00000024983,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14500,cg14712389,-0.00000085,0.00000425,-0.200144316,0.841498947,loss,ns,-0.0000238,0.00000722,-3.302205429,0.001071395,neg,ns,-0.005538464,0.002113876,-2.620051674,0.00922445,neg,ns,2.035059508,0.0000416,0.0000727,0.572663586,0.567287597,pos,ns,0.932551178,Ptprd,Ptprd_Exon,4,76066292,76066341,76066340,76066341,50,+,TCAAAGTGAGCGGCAATATATGGCTTTAATTCAACTTCTCTCCCATAACG,"Exon (Ptprd-206/Ptprd, exon 22 of 36)",4,75941238,76449980,508743,2,Ptprd-206,383639,Ptprd-206;Ptprd-204;Ptprd-213;Ptprd-220;Ptprd-203;Ptprd-217;Ptprd-218;Ptprd-219;Ptprd-201;Ptprd-222,Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,13,32,19266,ENSMUSG00000028399,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2811,cg03280986,0.0000185,0.00000477,3.874422799,0.000130434,gain,ns,-0.0000268,0.0000081,-3.30197092,0.00107226,neg,ns,-0.005376498,0.002373878,-2.264858294,0.024211498,neg,ns,1.61597834,0.000016,0.0000816,0.196403685,0.844422903,pos,ns,0.820001311,Pnisr,Pnisr_Exon,4,21874194,21874243,21874194,21874195,50,-,CGTGGAAATCTTAGTGGGAACAGTCATAAGCATAAAGGTGAGGCTAAAGA,Promoter (<=1kb),4,21874204,21875256,1053,1,Pnisr-204,0,Pnisr-201;Pnisr-213;Pnisr-202;Pnisr-203;Pnisr-207;Pnisr-204,Pnisr;Pnisr;Pnisr;Pnisr;Pnisr;Pnisr,0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,10,66625,ENSMUSG00000028248,conserved gene and region,4,21874041,21874195,155,*,155,11,0.483870968,1.262962963,0.070967742,0.000000389,CpGisland,TRUE,U10,Tr-S
26107,cg11222788,0.00000389,0.00000406,0.957315902,0.33915381,gain,ns,0.0000228,0.0000069,3.30137672,0.001074456,pos,ns,0.002277884,0.002022122,1.126482367,0.260832656,pos,ns,0.583638037,0.0000437,0.0000695,0.628007716,0.530461246,pos,ns,0.973956396,Dcx,Dcx_Exon,X,143931081,143931130,143931129,143931130,50,-,TCAGAGGACACAGCGTACACAATCCCCTTGAAGTAGCGGTCCCCATTGCG,"Exon (Dcx-201/Dcx, exon 2 of 7)",20,143855842,143933311,77470,2,Dcx-201,2181,Dcx-201;Dcx-203;Dcx-202;Dcx-204;Dcx-206;Dcx-205,Dcx;Dcx;Dcx;Dcx;Dcx;Dcx,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,8,13193,ENSMUSG00000031285,conserved gene and region,X,143930980,143931139,160,*,160,10,0.49375,1.025641026,0.0625,0.00000493,CpGisland,TRUE,NA,NRS
21107,cg04633983,-0.000018,0.00000775,-2.325689575,0.020680025,loss,ns,0.0000435,0.0000132,3.301349965,0.001074555,pos,ns,0.004791393,0.003859395,1.241488201,0.215363993,pos,ns,0.666826905,-0.000228934,0.000132724,-1.724887246,0.085544491,neg,ns,0.318492467,Barhl2,Barhl2_Intron,5,106468641,106468690,106468641,106468642,50,-,CGGCCAATGAGACAGAAAATAGACTAAAGGGAAATCATTAGTGGATGAGA,"Intron (Gm26872-201/Gm26872-201, intron 1 of 1)",5,106452523,106458166,5644,2,Barhl2-201,-10524,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,27,104382,ENSMUSG00000034384,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
8436,cg24488281,0.000115709,0.0000127,9.14166305,8.32E-18,gain,yes,-0.000071,0.0000215,-3.300768796,0.001076707,neg,ns,-0.009013762,0.006299695,-1.430825224,0.153487555,neg,ns,0.813926831,0.000446747,0.000216646,2.062107305,0.040030594,pos,ns,0.396265156,Zeb2,Zeb2_Exon,2,45113399,45113448,45113399,45113400,50,-,CGGAAAACGGTGCACACCATTCACAGAACTGGAGAACTCCAAGGGGCGAA,"Exon (Zeb2os-201/Zeb2os-201, exon 3 of 3)",2,44983632,45117395,133764,2,Zeb2-212,3947,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219;Zeb2-211;Zeb2-210;Zeb2-205;Zeb2-223;Zeb2-217;Zeb2-225;Zeb2-204;Zeb2-206;Zeb2-230,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;-3323;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,21,158,24136,ENSMUSG00000026872,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3834,cg26859540,-0.00000638,0.0000162,-0.394269354,0.693653272,loss,ns,0.0000908,0.0000275,3.3006837,0.001077022,pos,ns,-0.001552782,0.008058786,-0.192681869,0.847334291,neg,ns,0.071945217,0.000100363,0.000277141,0.362137086,0.717496329,pos,ns,0.814625332,Adgrb3,Adgrb3_Exon,1,25559778,25559827,25559826,25559827,50,+,GCATCAGCTTGTTCCTGAGGGACCCTTTTTTCATGAACAGATCGAGGTCG,"Exon (Adgrb3-206/Adgrb3, exon 2 of 29)",1,25067550,25826139,758590,2,Adgrb3-206,266312,Adgrb3-206;Adgrb3-205;Adgrb3-207;Adgrb3-201;Adgrb3-210,Adgrb3;Adgrb3;Adgrb3;Adgrb3;Adgrb3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,14,25,210933,ENSMUSG00000033569,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2148,cg00167250,-0.0000221,0.0000107,-2.070663515,0.039217716,loss,ns,0.00006,0.0000182,3.300237659,0.001078677,pos,ns,0.026941075,0.00532206,5.06215178,0.000000712,pos,ns,6.147392053,-0.001064758,0.000183025,-5.817548598,1.49E-08,neg,yes,0.725806467,Gm48800,Gm48800_Intron,13,18085616,18085665,18085616,18085617,50,-,CGGGGAGCAATCTTCCATCAAGTATTGATTTTTTTACACTCATGGAGTCT,"Intron (4930448F12Rik-201/4930448F12Rik-201, intron 5 of 5)",13,18094472,18095954,1483,2,Gm48800-201,10338,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,3,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7572,cg08664578,0.0000167,0.00000657,2.551115542,0.011217997,gain,ns,-0.0000368,0.0000112,-3.299721043,0.001080596,neg,ns,0.003866997,0.003267522,1.183464716,0.237531757,pos,ns,0.624278318,-0.000210843,0.00011237,-1.876328844,0.0615495,neg,ns,0.878751751,Cpeb2,Cpeb2_Exon,5,43285818,43285867,43285866,43285867,50,+,ACTTGCCTGCAGTATTACTGTGAGTTTTGTTGGGCAAATATCCACTCTCG,"Exon (Cpeb2-204/Cpeb2, exon 12 of 12)",5,43233170,43289723,56554,1,Cpeb2-204,52648,Cpeb2-204;Cpeb2-201;Cpeb2-205;Cpeb2-202,Cpeb2;Cpeb2;Cpeb2;Cpeb2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,11,231207,ENSMUSG00000039782,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24407,cg20586603,-0.00000501,0.00000891,-0.56232356,0.574301971,loss,ns,0.0000499,0.0000151,3.299177442,0.001082619,pos,ns,0.005053258,0.00443517,1.13936069,0.255432363,pos,ns,0.592724079,-0.000297863,0.000152525,-1.952879248,0.051733491,neg,ns,0.721422361,Fbn1,Fbn1_Exon,2,125412650,125412699,125412698,125412699,50,+,CAGGGGTGAGGCTGGGCAGGACACATCTCACAGGGGTGGCCCCAGGCTCG,"Exon (Fbn1-201/Fbn1, exon 7 of 66)",2,125300594,125506385,205792,2,Fbn1-201,93686,Fbn1-201;Fbn1-202;Fbn1-203,Fbn1;Fbn1;Fbn1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,14118,ENSMUSG00000027204,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3901,cg12198223,-0.00000286,0.0000013,-2.204199405,0.028244905,loss,ns,-0.00000727,0.0000022,-3.298431487,0.001085401,neg,ns,-0.001475933,0.000645762,-2.285569313,0.022954238,neg,ns,1.639137121,-0.000000413,0.0000222,-0.018619535,0.985156597,neg,ns,0.967063701,Nsd3,Nsd3_Exon,8,25706598,25706647,25706598,25706599,50,-,CGAGAACAGTGTAACTAATTTTTATATGTTAACTGTTACCAAGGTAAAAT,"Exon (Nsd3-204/Nsd3, exon 19 of 23)",8,25602284,25714970,112687,1,Nsd3-204,104314,Nsd3-204;Nsd3-206;Nsd3-201;Nsd3-210;Nsd3-202,Nsd3;Nsd3;Nsd3;Nsd3;Nsd3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,14,234135,ENSMUSG00000054823,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21401,cg25579186,-0.00000922,0.0000266,-0.34659226,0.729132801,loss,ns,-0.000149096,0.0000452,-3.298317917,0.001085825,neg,ns,0.03570309,0.013243096,2.695977569,0.007401546,pos,ns,2.130677578,-0.001875439,0.000455429,-4.117961966,0.0000491,neg,ns,0.655713912,Slc38a3,Slc38a3_threeUTR,9,107655334,107655383,107655334,107655335,50,+,CGGGTCCACCTTGCTGTAGGTGTGCAGCAGCTCCGACTCCACCCCGTCTG,3' UTR,9,107650634,107659528,8895,2,Slc38a3-202,4145,Slc38a3-202;Slc38a3-201;Slc38a3-211;Slc38a3-209;Slc38a3-203;Slc38a3-213;Slc38a3-205;Slc38a3-210;Slc38a3-212;Slc38a3-204;Slc38a3-206;Slc38a3-207;Slc38a3-214;Slc38a3-208,Slc38a3;Slc38a3;Slc38a3;Slc38a3;Slc38a3;Slc38a3;Slc38a3;Slc38a3;Slc38a3;Slc38a3;Slc38a3;Slc38a3;Slc38a3;Slc38a3,0;0;0;0;0;0;0;0;1878;3836;14147;13617;10078;13630,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,1,76257,ENSMUSG00000010064,conserved gene but different region,9,107655245,107655379,135,*,135,10,0.592592593,0.87040619,0.074074074,0.00000108,CpGisland,TRUE,NA,NRS
7914,cg14944561,0.0000697,0.00000473,14.74640805,1.17E-37,gain,yes,-0.0000265,0.00000803,-3.298235987,0.001086131,neg,ns,-0.002452866,0.002353248,-1.042332175,0.298069881,neg,ns,0.525681905,0.000160857,0.0000809,1.987661402,0.047728675,pos,ns,0.884581235,Gtdc1,Gtdc1_Intron,2,44632679,44632728,44632727,44632728,50,-,ATTTATCTGTTGTCAGCACAGGTTACACACTGTAATCCTTGACTGCCTCG,"Intron (Gtdc1-203/Gtdc1, intron 6 of 10)",2,44564412,44861622,297211,2,Gtdc1-203,228894,Gtdc1-203;Gtdc1-201;Gtdc1-205;Gtdc1-210;Gtdc1-204;Gtdc1-211,Gtdc1;Gtdc1;Gtdc1;Gtdc1;Gtdc1;Gtdc1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,43,227835,ENSMUSG00000036890,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19040,cg09822402,-0.0000033,0.00000468,-0.705842303,0.480816297,loss,ns,-0.0000262,0.00000794,-3.298150635,0.00108645,neg,ns,-0.005015441,0.002327583,-2.154784984,0.031948617,neg,ns,1.495547941,-0.000103797,0.00008,-1.296732111,0.195687746,neg,ns,0.832282821,Cdk12,Cdk12_Intron,11,98267093,98267142,98267093,98267094,50,+,CGTTTTCACCTGCCATTTAATTGGATGTATTTTTAATTAATGGGACCTCA,"Intron (Cdk12-206/Cdk12, intron 6 of 7)",11,98241737,98278504,36768,1,Cdk12-206,25356,Cdk12-206;Cdk12-204,Cdk12;Cdk12,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,25,69131,ENSMUSG00000003119,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25102,cg11352386,0.000165633,0.0000189,8.766817611,1.24E-16,gain,yes,-0.00010585,0.0000321,-3.297831143,0.001087644,neg,ns,0.04033787,0.009403324,4.289746059,0.0000239,pos,ns,4.621057527,-0.001725495,0.00032338,-5.335821556,0.000000184,neg,yes,0.412039004,Fgfr2,Fgfr2_Exon,7,132981291,132981340,132981291,132981292,50,+,CGCTGGAAAGATTGGGAATCATGGTATTCTCAGAGCTTTGGTTTACATTT,"Exon (Zranb1-202/Zranb1, exon 7 of 10)",7,130162451,133123350,2960900,2,Fgfr2-217,142010,Fgfr2-217;Zranb1-202;Zranb1-205;Zranb1-201;Zranb1-204;Zranb1-203,Fgfr2;Zranb1;Zranb1;Zranb1;Zranb1;Zranb1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,79,14183,ENSMUSG00000030849,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8855,cg22468194,0.0000535,0.00000906,5.903000908,9.36E-09,gain,yes,-0.0000508,0.0000154,-3.297067717,0.001090503,neg,ns,-0.003962896,0.004511029,-0.878490541,0.380357956,neg,ns,0.419807495,0.000127774,0.000155134,0.823638431,0.410778224,pos,ns,0.766289839,Ldb1,Ldb1_Exon,19,46035426,46035475,46035474,46035475,50,-,TGAACATGGGCTTGCCATGCTGGGTCACCATGCTGCCCTGGTCACAGTCG,"Exon (Ldb1-207/Ldb1, exon 6 of 11)",19,46031570,46045210,13641,2,Ldb1-207,9735,Ldb1-207;Ldb1-206;Ldb1-202;Ldb1-208;Ldb1-201;Ldb1-205;Ldb1-203;Ldb1-204,Ldb1;Ldb1;Ldb1;Ldb1;Ldb1;Ldb1;Ldb1;Ldb1,0;0;0;0;0;0;-548;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,9,16825,ENSMUSG00000025223,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
779,cg18583797,-0.00000529,0.00000432,-1.226025326,0.22111966,loss,ns,-0.0000242,0.00000733,-3.296496726,0.001092647,neg,ns,-0.003122087,0.002148067,-1.4534406,0.147113021,neg,ns,0.832348885,-0.000137705,0.0000739,-1.864103656,0.063252249,neg,ns,0.854523971,Usp7,Usp7_Exon,16,8712132,8712181,8712180,8712181,50,-,CTCAGTCTGCTGAAGCGCTCCACAGTGAACTGAAAGGTTGCCTCGGAGCG,"Exon (Usp7-207/Usp7, exon 4 of 32)",16,8689595,8792308,102714,2,Usp7-207,80127,Usp7-207;Usp7-206;Usp7-208;Usp7-210,Usp7;Usp7;Usp7;Usp7,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,10,252870,ENSMUSG00000022710,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25624,cg12981876,-0.000123023,0.00000819,-15.02357696,1.05E-38,loss,yes,-0.0000458,0.0000139,-3.295704946,0.001095625,neg,ns,0.006837955,0.004075575,1.677789098,0.094396126,pos,ns,1.025045827,-0.000933895,0.000140159,-6.66312944,1.22E-10,neg,yes,0.687537976,Epo,Epo_Exon,5,137525234,137525283,137525234,137525235,50,+,CGTTCCTGCCTGGGGGACACGCTGGAAGCCAAAGAATTTGCCAAACAATT,"Exon (Gigyf1-201/Gigyf1, exon 22 of 24)",5,137483020,137533242,50223,2,Epo-202,7959,Epo-202;Gigyf1-202;Gigyf1-201;Gnb2-201;Gnb2-213;Gnb2-209;Gnb2-203;Gnb2-204;Gnb2-202;Gnb2-212;Gnb2-214;Gnb2-215;Gnb2-208;Gnb2-205;Gnb2-210;Gnb2-211;Gnb2-206;Gnb2-207,Epo;Gigyf1;Gigyf1;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2,0;6686;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,9,13856,ENSMUSG00000029711,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16265,cg03685652,-0.00000187,0.00000382,-0.49018821,0.624347467,loss,ns,-0.0000214,0.00000648,-3.29515215,0.001097709,neg,ns,-0.003048946,0.001898987,-1.60556453,0.109387782,neg,ns,0.961031183,-0.000026,0.0000653,-0.398529975,0.69051392,neg,ns,0.911074353,Zdhhc5,Zdhhc5_Exon,2,84690105,84690154,84690153,84690154,50,+,CCTGGTGTTGACTGAATGCCTGAGTCCCCCAAGCCTGGTTCTTCCTCACG,"Exon (Zdhhc5-201/Zdhhc5, exon 11 of 12)",2,84687970,84715180,27211,2,Zdhhc5-201,25026,Med19-201;Med19-202;Zdhhc5-201,Med19;Med19;Zdhhc5,11703;4472;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,228136,ENSMUSG00000034075,conserved gene and region,2,84690153,84690319,167,*,167,10,0.610778443,0.667732907,0.05988024,0.00000716,CpGisland,TRUE,U10,Tr-S
9188,cg12908948,0.000134653,0.00000935,14.39679922,2.44E-36,gain,yes,-0.0000523,0.0000159,-3.291992511,0.00110969,neg,ns,0.00146744,0.004655066,0.315235106,0.752795247,pos,ns,0.123323132,-0.000294625,0.000160087,-1.840404286,0.06666461,neg,ns,0.390830506,Cadm1,Cadm1_Intergenic_upstream,9,47474985,47475034,47475033,47475034,50,-,GCCTTCATTGCCTCCCCAGCAGAAATGGCTAATACCTGCTTTCTGGGACG,Distal Intergenic,9,47530173,47853385,323213,1,Cadm1-204,-55188,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,18,77,54725,ENSMUSG00000032076,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2671,cg15668691,0.00000578,0.0000112,0.515380706,0.606654337,gain,ns,0.0000627,0.000019,3.291766921,0.00111055,pos,ns,0.012685554,0.005578625,2.273957336,0.023651937,pos,ns,1.626133291,-0.000200558,0.000191848,-1.045395708,0.296654575,neg,ns,0.861212413,Kcnd2,Kcnd2_Exon,6,21217096,21217145,21217096,21217097,50,-,CGTGGTGGCCATCCTGCCTTATTACATTGGGCTGGTGATGACAGACAATG,"Exon (Kcnd2-201/Kcnd2, exon 1 of 6)",6,21215503,21729805,514303,1,Kcnd2-201,1593,Kcnd2-201,Kcnd2,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,16508,ENSMUSG00000060882,conserved gene and region,6,21216975,21217097,123,*,123,10,0.544715447,1.098214286,0.081300813,0.000000457,CpGisland,TRUE,U13,Hc-P
22314,cg25982943,0.000215032,0.00000944,22.78441907,3.40E-68,gain,yes,-0.0000527,0.000016,-3.289472526,0.001119333,neg,ns,0.008256188,0.004697239,1.757668276,0.079790937,pos,ns,1.098046437,0.00000998,0.000161538,0.061767485,0.950787801,pos,ns,0.178586612,Lhfpl4,Lhfpl4_Exon,6,113194079,113194128,113194079,113194080,50,+,CGCCCACCCAGTAGGGCTGGATGAAGACCACCACGTTGATGATGGCGAAG,"Exon (Lhfpl4-201/Lhfpl4, exon 2 of 4)",6,113168090,113195384,27295,2,Lhfpl4-201,1256,Lhfpl4-201;Lhfpl4-202,Lhfpl4;Lhfpl4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,7,269788,ENSMUSG00000042873,conserved gene and region,6,113193884,113194365,482,*,482,42,0.668049793,0.8053467,0.08713693,1.49E-29,CpGisland,TRUE,U13,Hc-P
15014,cg27290859,0.00000743,0.00000214,3.478739482,0.000575895,gain,ns,-0.0000119,0.00000363,-3.289304078,0.00111998,neg,ns,0.003900775,0.001062705,3.670610154,0.000284828,pos,ns,3.545417428,-0.0000771,0.0000365,-2.109567331,0.035697005,neg,ns,0.941374245,Gphn,Gphn_Exon,12,78492041,78492090,78492089,78492090,50,-,TGCTTTCAATTCATACTGCCAGCTCTACCTCATGCCATTGACCTTTTACG,"Exon (Gphn-201/Gphn, exon 7 of 24)",12,78226379,78684772,458394,1,Gphn-201,265662,Gphn-201;Gphn-202,Gphn;Gphn,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,11,268566,ENSMUSG00000047454,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8314,cg01998606,0.0000658,0.0000179,3.668670473,0.000286906,gain,ns,-0.000100149,0.0000305,-3.287842241,0.001125613,neg,ns,0.027338049,0.008923847,3.063482643,0.002379768,pos,ns,2.623465447,-0.000959261,0.00030689,-3.125745919,0.001941519,neg,ns,0.787438619,Zeb2,Zeb2_Exon,2,45001612,45001661,45001660,45001661,50,-,TGGCTTGTGTGTCACCATATGCCGCTCGAGCTGGGTGCGGTAGGCAAACG,"Exon (Zeb2-212/Zeb2, exon 7 of 11)",2,44983632,45117395,133764,2,Zeb2-212,115734,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-227;Zeb2-216;Zeb2-229;Zeb2-218;Zeb2-222,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,21,158,24136,ENSMUSG00000026872,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
16286,cg13649253,0.000185136,0.0000219,8.450220508,1.15E-15,gain,yes,-0.000122342,0.0000372,-3.286935222,0.00112912,neg,ns,-0.022300273,0.010904366,-2.04507746,0.041691303,neg,ns,1.379954531,0.001158898,0.000375,3.090393135,0.002180241,pos,ns,0.742737072,Nfix,Nfix_Exon,8,84716244,84716293,84716292,84716293,50,-,TAGCAAAAATGACCCCGGGACTTTGCCCTGGCCGCTACCGTTGGGCTGCG,"Exon (Nfix-204/Nfix, exon 9 of 11)",8,84704712,84773396,68685,2,Nfix-204,57103,Nfix-204;Nfix-201;Nfix-202;Nfix-203;Nfix-206;Nfix-205,Nfix;Nfix;Nfix;Nfix;Nfix;Nfix,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,20,49,18032,ENSMUSG00000001911,conserved gene but different region,8,84716235,84716387,153,*,153,15,0.62745098,1,0.098039216,1.26E-11,CpGisland,TRUE,NA,NRS
20956,cg25366257,0.0000191,0.00000696,2.738256315,0.006533678,gain,ns,-0.0000388,0.0000118,-3.285261414,0.001135621,neg,ns,0.003544234,0.003463593,1.02328248,0.306972157,pos,ns,0.512901014,-0.0000599,0.000119113,-0.503089084,0.61525889,neg,ns,0.700556117,Papola,Papola_Intergenic_downstream,12,105843401,105843450,105843401,105843402,50,-,CGAAAAGAGACAGTTGGGCAGAACTGCTCCCCATGAGTGACAGAGGGCAT,Distal Intergenic,12,105829067,105835499,6433,1,Papola-220,14383,Papola-202;Papola-201;Papola-214,Papola;Papola;Papola,0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,8,18789,ENSMUSG00000021111,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17530,cg15595407,-0.00000577,0.0000109,-0.528874365,0.597271067,loss,ns,-0.0000609,0.0000185,-3.284815577,0.001137358,neg,ns,0.000446047,0.005427989,0.082175377,0.934560286,pos,ns,0.029392678,-0.000219624,0.000186668,-1.176545758,0.240279501,neg,ns,0.918699852,Nrxn1,Nrxn1_Exon,17,90704269,90704318,90704317,90704318,50,+,ACAGAGTTATTTCATCACTGCTGCTTTGAATGGGGTTTTGAGACAAGTCG,"Exon (Nrxn1-202/Nrxn1, exon 5 of 21)",17,90033631,91088907,1055277,2,Nrxn1-202,384589,Nrxn1-202;Nrxn1-207;Nrxn1-216;Nrxn1-209;Nrxn1-201;Nrxn1-206;Nrxn1-208;Nrxn1-210;Nrxn1-224;Nrxn1-205;Nrxn1-203,Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,22,27,18189,ENSMUSG00000024109,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9053,cg06468355,-0.00000776,0.00000527,-1.473274628,0.141691636,loss,ns,-0.0000294,0.00000895,-3.284659034,0.001137968,neg,ns,0.002404549,0.002621044,0.917401179,0.359645625,pos,ns,0.444125218,-0.000249975,0.0000901,-2.773261063,0.005885915,neg,ns,0.90260105,Cdkn3,Cdkn3_Intergenic_upstream,14,46718466,46718515,46718514,46718515,50,-,TCCTGCCAAAGTACACATCAATTATACAGCTTCAGTCAGGCGGATGCTCG,Distal Intergenic,14,46760541,46771669,11129,1,Cdkn3-201,-42075,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,72391,ENSMUSG00000037628,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5676,cg16839209,0.0000966,0.0000226,4.269789603,0.000026,gain,ns,-0.000126219,0.0000384,-3.284072561,0.001140259,neg,ns,0.090176291,0.011259736,8.008739417,2.36E-14,pos,yes,13.62683761,-0.002007386,0.000387221,-5.184077066,0.000000392,neg,yes,0.487547128,Mapkap1,Mapkap1_Intron,2,34535187,34535236,34535235,34535236,50,+,TTTGGATGCTTGCCAGGAGTCATTGTTCACCCTCGGCTGTGGCGGCTCCG,"Intron (Mapkap1-204/Mapkap1, intron 6 of 10)",2,34406862,34623475,216614,1,Mapkap1-204,128325,Mapkap1-204;Mapkap1-202;Mapkap1-201;Mapkap1-209;Mapkap1-203;Mapkap1-207,Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,59,227743,ENSMUSG00000038696,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17202,cg22311716,-0.00000739,0.0000049,-1.508174668,0.132528262,loss,ns,-0.0000273,0.00000832,-3.283878582,0.001141017,neg,ns,-0.003015623,0.002437241,-1.237309899,0.216908458,neg,ns,0.663723512,-0.0000475,0.0000838,-0.566499564,0.571464128,neg,ns,0.782795465,Clk2,Clk2_threeUTR,3,89173410,89173459,89173458,89173459,50,+,CCATGGCCACATGTGTATCTCCTTTGAGCTTCTGGGCCTTAGCACCTTCG,3' UTR,3,89164795,89176921,12127,1,Clk2-202,8615,Clk2-202;Clk2-201;Clk2-209;Clk2-207;Clk2-203;Clk2-204;Clk2-206;Clk2-211;Clk2-205;Clk2-208;Scamp3-201;Scamp3-203;Scamp3-206;Scamp3-202;Scamp3-208;Scamp3-207;Scamp3-205;Scamp3-204,Clk2;Clk2;Clk2;Clk2;Clk2;Clk2;Clk2;Clk2;Clk2;Clk2;Scamp3;Scamp3;Scamp3;Scamp3;Scamp3;Scamp3;Scamp3;Scamp3,0;0;0;0;0;0;0;0;-496;-1576;0;0;-4037;0;-4072;-4078;-4162;-4299,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,10,12748,ENSMUSG00000068917,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11164,cg17943107,0.0000364,0.00000387,9.396270439,1.28E-18,gain,yes,-0.0000216,0.00000658,-3.282771353,0.001145355,neg,ns,-0.001183086,0.001927199,-0.613888881,0.539738974,neg,ns,0.267816221,0.0000771,0.0000663,1.162963032,0.245738932,pos,ns,0.900419738,Marchf3,Marchf3_Exon,18,56807716,56807765,56807764,56807765,50,-,TCACAGTAGCTGGTGTTTGAGGATGACAGCCAGTGCTCCAGGCAGCTCCG,"Exon (Marchf3-202/Marchf3, exon 3 of 5)",18,56761716,56925548,163833,2,Marchf3-202,117783,Marchf3-202;Marchf3-201;Marchf3-203,Marchf3;Marchf3;Marchf3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,7,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23269,cg08527720,0.0000447,0.00000529,8.454849806,1.11E-15,gain,yes,-0.0000295,0.00000898,-3.282418711,0.00114674,neg,ns,-0.003492883,0.002630569,-1.327805096,0.185219373,neg,ns,0.732313591,0.00014534,0.0000905,1.606588193,0.109162805,pos,ns,0.879374363,Eri3,Eri3_Intron,4,117644991,117645040,117645039,117645040,50,-,GCTGCAGCCGATGAGGGCTACTTCATCTATTAAACCCAATACACTTGTCG,"Intron (Eri3-201/Eri3, intron 7 of 8)",4,117550365,117674297,123933,1,Eri3-201,94626,Eri3-201;Eri3-206;Eri3-203,Eri3;Eri3;Eri3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,82,97,140546,ENSMUSG00000033423,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27627,cg01277258,0.0000173,0.0000141,1.230363128,0.219493955,gain,ns,0.0000784,0.0000239,3.282033218,0.001148255,pos,ns,0.001870416,0.006998618,0.267254963,0.78945057,pos,ns,0.102675057,0.000203221,0.000240682,0.844353685,0.399122919,pos,ns,0.382164128,Bmp7,Bmp7_Intron,2,172933971,172934020,172934019,172934020,50,-,AACACAGTTTATACTTGGCCAGCCCTTTGAAATACTGTACCATGCTACCG,"Intron (Bmp7-201/Bmp7, intron 1 of 6)",2,172868012,172940321,72310,2,Bmp7-201,6301,Bmp7-201;Bmp7-202,Bmp7;Bmp7,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,12162,ENSMUSG00000008999,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
15129,cg05418746,0.0000282,0.0000116,2.422271588,0.015996933,gain,ns,-0.0000648,0.0000198,-3.281659854,0.001149725,neg,ns,0.034523409,0.005787612,5.965052783,6.67E-09,pos,ns,8.176144876,-0.001615866,0.000199035,-8.118482806,1.12E-14,neg,yes,0.631673055,Pla2g6,Pla2g6_Exon,15,79286794,79286843,79286794,79286795,50,+,CGGTGCTCATAGATGTAGACCTCGGTCTCCCAGAGGGCGTTGACCAGCAC,"Exon (Pla2g6-210/Pla2g6, exon 17 of 17)",15,79286228,79327964,41737,2,Pla2g6-210,41121,Baiap2l2-201;Baiap2l2-203;Baiap2l2-205;Pla2g6-210;Pla2g6-202;Pla2g6-206;Pla2g6-201;Pla2g6-203;Pla2g6-213;Pla2g6-212,Baiap2l2;Baiap2l2;Baiap2l2;Pla2g6;Pla2g6;Pla2g6;Pla2g6;Pla2g6;Pla2g6;Pla2g6,-1257;-1352;-1301;0;0;0;0;0;1394;17649,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,53357,ENSMUSG00000042632,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21724,cg22057720,0.0000145,0.00000669,2.174025894,0.030459484,gain,ns,0.0000373,0.0000114,3.281243623,0.001151366,pos,ns,0.006255679,0.003329194,1.879036987,0.061177509,pos,ns,1.213408213,0.0000748,0.000114491,0.653614818,0.513844511,pos,ns,0.150375117,Slitrk1,Slitrk1_fiveUTR,14,108913238,108913287,108913286,108913287,50,-,AACAAAGAGACGTCTCCAGCAACAGAATCCAAAGCAGCATTTTTAAAGCG,Promoter (<=1kb),14,108908800,108914158,5359,2,Slitrk1-201,871,Slitrk1-201,Slitrk1,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,7,17,76965,ENSMUSG00000075478,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
13576,cg16034794,0.000116283,0.0000084,13.84873401,2.77E-34,gain,yes,-0.0000468,0.0000143,-3.280718226,0.001153439,neg,ns,0.018994304,0.004179112,4.545057706,0.00000788,pos,ns,5.103376938,-0.000107135,0.000143719,-0.745449224,0.456565021,neg,ns,0.866798158,Hat1,Hat1_Exon,2,71420614,71420663,71420614,71420615,50,+,CGAGAATATCATGAAAGGCTTCAGACCTTTTTGATGTGGTTTATTGAAAC,"Exon (Hat1-202/Hat1, exon 6 of 11)",2,71388958,71441622,52665,1,Hat1-202,31656,Hat1-202;Hat1-201;Hat1-204,Hat1;Hat1;Hat1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,11,12,107435,ENSMUSG00000027018,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12781,cg01997098,-0.00000583,0.00000117,-5.000842795,0.000000957,loss,yes,0.0000065,0.00000198,3.279783905,0.001157136,pos,ns,0.001203392,0.000580217,2.074037441,0.038901073,pos,ns,1.410038423,-0.0000333,0.00002,-1.666864329,0.096551329,neg,ns,0.043098248,Jmjd1c,Jmjd1c_Intron,10,67185642,67185691,67185642,67185643,50,-,CGTGCTGGAAGTGACTCCATCAGCACCTGTGACGGGGGATTAGTTACAGT,"Intron (Jmjd1c-209/Jmjd1c, intron 2 of 2)",10,67096125,67191748,95624,1,Jmjd1c-209,89517,Jmjd1c-209;Jmjd1c-210;Jmjd1c-211;Jmjd1c-201;Jmjd1c-212;Jmjd1c-205;Jmjd1c-206;Jmjd1c-208,Jmjd1c;Jmjd1c;Jmjd1c;Jmjd1c;Jmjd1c;Jmjd1c;Jmjd1c;Jmjd1c,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,9,108829,ENSMUSG00000037876,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
11105,cg06038792,0.00000138,0.0000109,0.126108622,0.899727692,gain,ns,0.0000608,0.0000185,3.279561487,0.001158018,pos,ns,0.024212336,0.005429678,4.459258295,0.0000115,pos,ns,4.938807899,-0.000409536,0.000186726,-2.193243067,0.029032374,neg,ns,0.729053172,Lingo1,Lingo1_Exon,9,56619868,56619917,56619868,56619869,50,-,CGCACCTCCAGCGTGCCATCAGGGAAGACTGTGAGCCGCCCATTGCTCTT,"Exon (Lingo1-201/Lingo1, exon 4 of 4)",9,56618475,56685253,66779,2,Lingo1-201,65336,Lingo1-201;Lingo1-206;Lingo1-203;Lingo1-202,Lingo1;Lingo1;Lingo1;Lingo1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,25,235402,ENSMUSG00000049556,conserved gene and region,9,56619454,56620252,799,*,799,46,0.600750939,0.647544883,0.057571965,3.48E-24,CpGisland,TRUE,NA,NRS
27760,cg16744764,0.00000596,0.00000679,0.876927735,0.381204947,gain,ns,-0.0000378,0.0000115,-3.278806853,0.001161013,neg,ns,-0.002602988,0.003380573,-0.76998411,0.441895665,neg,ns,0.354680259,-0.000123526,0.000116258,-1.062515319,0.288828811,neg,ns,0.775577691,Dusp10,Dusp10_Exon,1,184037397,184037446,184037445,184037446,50,+,AGTCACATCCAAGGAGCTGTCCACATTAACTGTGCCGATAAGATCAGCCG,"Exon (Dusp10-201/Dusp10, exon 2 of 4)",1,184034381,184075636,41256,1,Dusp10-201,3016,1700056E22Rik-202;1700056E22Rik-201;Dusp10-202;Dusp10-201,1700056E22Rik;1700056E22Rik;Dusp10;Dusp10,-3096;-3399;24095;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,63953,ENSMUSG00000039384,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8337,cg23383461,0.0000289,0.0000121,2.390573493,0.017418667,gain,ns,-0.0000673,0.0000205,-3.278561653,0.001161988,neg,ns,-0.009826736,0.006016035,-1.633424063,0.103395018,neg,ns,0.985500386,0.000490778,0.000206891,2.372158772,0.018294766,pos,ns,0.587064397,Zeb2,Zeb2_Intron,2,45024703,45024752,45024703,45024704,50,-,CGGGCAAACAGAATCTGCTGACCTGGTTTGAATACCAATTGACGGGGGAA,"Intron (Zeb2-212/Zeb2, intron 3 of 10)",2,44983632,45117395,133764,2,Zeb2-212,92643,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-227;Zeb2-216;Zeb2-229;Zeb2-218;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13468,cg22416332,-0.0000171,0.00000412,-4.153687593,0.0000423,loss,ns,-0.0000229,0.000007,-3.27853737,0.001162085,neg,ns,0.005537253,0.002050167,2.700878481,0.007295876,pos,ns,2.13692257,-0.000391035,0.0000705,-5.546191268,6.26E-08,neg,yes,0.921033439,Xpo7,Xpo7_Exon,14,70682386,70682435,70682386,70682387,50,+,CGCATGTCTGTCAGGTTGGACTGATTGTTAATACCCAAAAATGAAAAGTG,"Exon (Xpo7-202/Xpo7, exon 18 of 28)",14,70654246,70766628,112383,2,Xpo7-202,84193,Xpo7-202;Xpo7-201;Xpo7-206;Xpo7-203;Xpo7-204;Xpo7-205,Xpo7;Xpo7;Xpo7;Xpo7;Xpo7;Xpo7,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,13,65246,ENSMUSG00000022100,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25815,cg04595593,0.000110224,0.00000789,13.96721777,1.00E-34,gain,yes,-0.000044,0.0000134,-3.2783862,0.001162687,neg,ns,0.009034378,0.003927754,2.300138345,0.022104324,pos,ns,1.655522756,0.0000151,0.000135075,0.112017605,0.910881944,pos,ns,0.267445856,Uncx,Uncx_Intergenic_downstream,5,139551888,139551937,139551888,139551889,50,+,CGTGAAAAATGAGAGAGACTCCATCCGGAGGTGTCGGATCGATTCAGGAT,Distal Intergenic,5,139543898,139545268,1371,1,Uncx-202,7990,Uncx-201,Uncx,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,59,88,22255,ENSMUSG00000029546,conserved gene and region,5,139551796,139551928,133,*,133,9,0.518796993,1.023076923,0.067669173,0.00000959,CpGisland,TRUE,U13,Hc-P
9210,cg12003528,-0.0000109,0.0000073,-1.490080481,0.137219798,loss,ns,-0.0000406,0.0000124,-3.276647793,0.001169624,neg,ns,0.007899307,0.003631869,2.174997496,0.030385903,pos,ns,1.517327846,-0.000601179,0.0001249,-4.813298343,0.00000232,neg,ns,0.855639063,Ezh2,Ezh2_threeUTR,6,47561866,47561915,47561914,47561915,50,+,ACTCTTGGCAGAAGGCTGGTTCCAAGTAAAAACTGTGTTATGGAAAATCG,3' UTR,6,47530139,47595030,64892,2,Ezh2-201,33115,Ezh2-201;Ezh2-203;Ezh2-204;Ezh2-202;Ezh2-215;Ezh2-205;Ezh2-211,Ezh2;Ezh2;Ezh2;Ezh2;Ezh2;Ezh2;Ezh2,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,3,14056,ENSMUSG00000029687,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15666,cg11595310,0.0000064,0.0000132,0.485929148,0.627360695,gain,ns,0.0000733,0.0000224,3.27619933,0.00117142,pos,ns,0.010884766,0.00655126,1.661476702,0.097628652,pos,ns,1.010422707,-0.0000697,0.000225297,-0.309414496,0.757214113,neg,ns,0.556638855,Nfib,Nfib_Intron,4,82691277,82691326,82691277,82691278,50,+,CGTGATTAGTTAGTATTATGCTAATCTGAGCCTGGAATTTACCTAAATCT,"Intron (Nfib-212/Nfib, intron 1 of 1)",4,82498321,82705750,207430,2,Nfib-212,14424,Nfib-212,Nfib,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,66,18028,ENSMUSG00000008575,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17563,cg11417778,-0.00000259,0.00000153,-1.684494668,0.093092578,loss,ns,-0.00000854,0.00000261,-3.275075439,0.001175933,neg,ns,0.001826398,0.000763803,2.391189466,0.017390011,pos,ns,1.759700134,-0.0000413,0.0000263,-1.572524884,0.116848906,neg,ns,0.957555059,Paxbp1,Paxbp1_Exon,16,91030432,91030481,91030480,91030481,50,+,CTTGAATGGCTTGAAAACTCCGAAGATTCATCTTTAATATCATCTTGTCG,"Exon (Paxbp1-202/Paxbp1, exon 8 of 18)",16,91014037,91044543,30507,2,Paxbp1-202,14062,Paxbp1-202;Paxbp1-201;Paxbp1-207;Paxbp1-206;Paxbp1-205;Paxbp1-203;Paxbp1-204,Paxbp1;Paxbp1;Paxbp1;Paxbp1;Paxbp1;Paxbp1;Paxbp1,0;0;0;0;-2794;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,7,67367,ENSMUSG00000022974,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22424,cg17734775,-0.00012235,0.0000178,-6.866797743,3.59E-11,loss,yes,0.0000991,0.0000303,3.273486094,0.001182341,pos,ns,0.040659796,0.008867999,4.585002518,0.00000659,pos,ns,5.180844918,-0.001970041,0.00030497,-6.45979214,4.05E-10,neg,yes,0.662220679,Mvk,Mvk_Intergenic_downstream,5,114475312,114475361,114475312,114475313,50,+,CGAGCGTTGGTTCCACTTTATATTTGTCTGTGTGATTAATAAAGGCAGCT,Distal Intergenic,5,114452420,114460572,8153,1,Mvk-207,22892,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,7,17855,ENSMUSG00000041939,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26925,cg04679148,0.000041,0.0000277,1.480769682,0.139683584,gain,ns,0.00015394,0.000047,3.27344319,0.001182515,pos,ns,0.01855211,0.013777334,1.346567462,0.179103264,pos,ns,0.7468965,0.00055158,0.000473801,1.164158884,0.245254792,pos,ns,0.395884666,Cacna1e,Cacna1e_fiveUTR,1,154725693,154725742,154725741,154725742,50,-,TCTTCTCCGAAGATGAACAGGGATCTGTTGACGGTGAAACAGTTCTGCCG,Promoter (<=1kb),1,154390731,154726356,335626,2,Cacna1e-203,614,Cacna1e-203;Cacna1e-201;Cacna1e-207;Cacna1e-206;Cacna1e-209;Cacna1e-204,Cacna1e;Cacna1e;Cacna1e;Cacna1e;Cacna1e;Cacna1e,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,9,19,12290,ENSMUSG00000004110,conserved gene but different region,1,154725658,154725913,256,*,256,21,0.6015625,0.907341772,0.08203125,1.74E-14,CpGisland,TRUE,U13,Hc-P
23368,cg19429582,-0.0000156,0.0000112,-1.39726311,0.163333724,loss,ns,0.0000621,0.000019,3.273442133,0.001182519,pos,ns,-0.000109799,0.005562018,-0.01974083,0.984262819,neg,ns,0.00688892,0.0000738,0.000191277,0.385933104,0.699810933,pos,ns,0.755428317,Sox21,Sox21_Intergenic_downstream,14,118194580,118194629,118194628,118194629,50,+,TGACCCTCTCTCCAGGAATTTTGTGCTCAGTGTTCTTCCCTAATCTCCCG,Distal Intergenic,14,118233232,118237030,3799,2,Sox21-201,42401,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,26,27,223227,ENSMUSG00000061517,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
25281,cg16540608,0.0000286,0.0000082,3.48837734,0.000556289,gain,ns,0.0000456,0.0000139,3.272728682,0.001185407,pos,ns,0.00740598,0.004081006,1.814743873,0.070529665,pos,ns,1.151628178,-0.0000135,0.000140345,-0.096186569,0.923434549,neg,ns,0.524885468,Gm43559,Gm43559_Intergenic_upstream,3,134302903,134302952,134302951,134302952,50,+,CAGCAGTGAAAGCCCCCGTGGGAATAATATATTTAGCAGGGTTCGCTGCG,Distal Intergenic,3,134272045,134272510,466,2,Gm43559-201,-30393,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,7,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20860,cg09166627,0.000114541,0.00000736,15.57271703,8.54E-41,gain,yes,-0.0000409,0.0000125,-3.271323842,0.001191112,neg,ns,0.003144375,0.003660783,0.858935274,0.391039899,pos,ns,0.407778928,0.000190322,0.000125894,1.511761542,0.131613243,pos,ns,0.212462063,Pax6,Pax6_fiveUTR,2,105668895,105668944,105668943,105668944,50,-,CACCCTCTTTTCTTATCATTGACATTTAAACTCTGGGGCAGGTCCTCGCG,Promoter (<=1kb),2,105668900,105697364,28465,1,Pax6-206,0,Pax6-206;Pax6-207;Pax6-210;Pax6-214;Pax6-208,Pax6;Pax6;Pax6;Pax6;Pax6,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,15,78,18508,ENSMUSG00000027168,mapped to different genes,2,105668770,105669154,385,*,385,27,0.594805195,0.805813954,0.07012987,1.13E-16,CpGisland,TRUE,NA,NRS
474,cg12698769,0.000000907,0.00000257,0.353210248,0.724170889,gain,ns,-0.0000143,0.00000436,-3.269684229,0.001197803,neg,ns,-0.001270945,0.001278684,-0.993947266,0.32102373,neg,ns,0.493462863,-0.000109526,0.000044,-2.490708497,0.013271987,neg,ns,0.925986637,Ogdh,Ogdh_Exon,11,6316981,6317030,6316981,6316982,50,-,CGAGGGCACCATGTAGCACAGCTGGACCCCCTGGGGATTTTGGATGCTGA,"Exon (Ogdh-201/Ogdh, exon 4 of 23)",11,6291633,6356642,65010,1,Ogdh-201,25348,Ogdh-201;Ogdh-204;Ogdh-203;Ogdh-207;Ogdh-206;Ogdh-202,Ogdh;Ogdh;Ogdh;Ogdh;Ogdh;Ogdh,0;0;0;24996;24809;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,18293,ENSMUSG00000020456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21267,cg02957122,0.000014,0.00000412,3.406010817,0.000746072,gain,ns,-0.0000229,0.000007,-3.269396189,0.001198982,neg,ns,-0.003464825,0.002050096,-1.690079433,0.092018026,neg,ns,1.036127088,0.000151349,0.0000705,2.146716988,0.032591451,pos,ns,0.880949127,Ssbp3,Ssbp3_Exon,4,107027255,107027304,107027303,107027304,50,+,TCCACCTCACAATCCTAGCAGCATGATGGGACCCCACAGTCAGGTAAACG,"Exon (Ssbp3-216/Ssbp3, exon 6 of 9)",4,106910701,107031069,120369,1,Ssbp3-216,116554,Ssbp3-216;Ssbp3-201;Ssbp3-215;Ssbp3-202;Ssbp3-203;Ssbp3-213;Ssbp3-214;Ssbp3-211;Ssbp3-212;Ssbp3-204;Ssbp3-206;Ssbp3-210;Ssbp3-205,Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3,0;0;0;0;0;0;0;0;0;0;0;0;-3528,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,18,72475,ENSMUSG00000061887,conserved gene but different region,4,107027303,107027364,62,*,62,9,0.806451613,0.93,0.14516129,1.18E-08,CpGisland,TRUE,U10,Tr-S
2468,cg10393810,0.00000391,0.0000167,0.233933131,0.815191305,gain,ns,0.0000929,0.0000284,3.269117319,0.001200124,pos,ns,0.021001864,0.008328825,2.521587814,0.012183635,pos,ns,1.914223105,-0.00049695,0.000286428,-1.734993131,0.083735887,neg,ns,0.738168102,Gm4849,Gm4849_Intergenic_downstream,1,19700056,19700105,19700056,19700057,50,-,CGGAAGCGAGTTTAAAGCATAAAATCACCAGGGGAAATAAGAAGAGTTTC,Distal Intergenic,1,19330939,19333184,2246,1,Gm4849-201,369166,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,10,226901,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1919,cg25269791,-0.00000923,0.00000439,-2.103818818,0.036199534,loss,ns,0.0000244,0.00000745,3.268689604,0.001201879,pos,ns,0.006646921,0.002183713,3.043862565,0.002535683,pos,ns,2.595905119,-0.00020766,0.0000751,-2.765202286,0.006029661,neg,ns,0.904472684,Dnm1l,Dnm1l_Exon,16,16314006,16314055,16314006,16314007,50,-,CGGATTTCAGCAATAATTTGACTGGCTCCTTGTAATGCCTGCATTAAAGG,"Exon (Dnm1l-201/Dnm1l, exon 18 of 18)",16,16312230,16358959,46730,2,Dnm1l-201,44904,Dnm1l-201;Dnm1l-202;Dnm1l-203;Dnm1l-206;Dnm1l-204;Dnm1l-207;Yars2-201;Yars2-203,Dnm1l;Dnm1l;Dnm1l;Dnm1l;Dnm1l;Dnm1l;Yars2;Yars2,0;0;0;0;0;0;11028;11025,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,74006,ENSMUSG00000022789,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12966,cg12944823,-0.0000129,0.0000056,-2.293550995,0.022485143,loss,ns,0.0000311,0.00000952,3.268237609,0.001203735,pos,ns,0.014144966,0.002789656,5.070504715,0.000000684,pos,ns,6.164979705,-0.000481218,0.0000959,-5.016032763,0.00000089,neg,yes,0.82875005,Gm50259,Gm50259_Intergenic_upstream,18,68853040,68853089,68853088,68853089,50,+,CTGAACATAACAAATGAAGTTTGGGCACTGGATCTGGTGAAGTGGACACG,Distal Intergenic,18,68568411,68568744,334,2,Gm50259-201,-284296,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,7,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8422,cg11070690,-0.0000606,0.0000163,-3.704389656,0.000250835,loss,ns,0.0000907,0.0000278,3.267688218,0.001205995,pos,ns,0.00549322,0.008135925,0.675180752,0.500064216,pos,ns,0.300974222,-0.0000967,0.000279794,-0.345690581,0.729809734,neg,ns,0.453398785,Kazald1,Kazald1_Intron,19,45104901,45104950,45104949,45104950,50,+,TAATCAATCTTGCAGCTGTCAGGCCGACAGGCAGGAGTATTAACCTGGCG,"Intron (Gm35867-203/Gm35867-203, intron 2 of 4)",19,45076139,45079289,3151,1,Kazald1-201,28762,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,8,107250,ENSMUSG00000025213,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25467,cg16998038,-0.0000178,0.0000102,-1.7430521,0.082316015,loss,ns,0.0000566,0.0000173,3.266602255,0.001210474,pos,ns,0.007973199,0.005080432,1.569393732,0.11757634,pos,ns,0.929680062,-0.00029243,0.000174716,-1.67374571,0.095189232,neg,ns,0.772382162,Ephb2,Ephb2_Intron,4,136773250,136773299,136773298,136773299,50,+,TCTAATTAACATGCGGAGGCCCTGCAGCCTAAACACCCCAAATAATTGCG,"Intron (Ephb2-202/Ephb2, intron 2 of 15)",4,136647539,136835988,188450,2,Ephb2-202,62689,Ephb2-202;Ephb2-201;Ephb2-203;Ephb2-204,Ephb2;Ephb2;Ephb2;Ephb2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,15,13844,ENSMUSG00000028664,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13552,cg20063406,-0.0000223,0.00000924,-2.41858481,0.016156849,loss,ns,0.0000513,0.0000157,3.26595431,0.001213154,pos,ns,0.007928883,0.004598007,1.724417287,0.085629363,pos,ns,1.067377286,-0.000211381,0.000158125,-1.336797733,0.182268875,neg,ns,0.805419098,Mtm1,Mtm1_Exon,X,71254313,71254362,71254313,71254314,50,-,CGCGACAAGTAGAGGAGAAAATTCCTATGGTCTAGATATTACTTGTAAAG,"Exon (Mtm1-213/Mtm1, exon 5 of 15)",20,71210767,71315295,104529,1,Mtm1-213,43546,Mtm1-213;Mtm1-204;Mtm1-201;Mtm1-203;Mtm1-206;Mtm1-209;Mtm1-207;Mtm1-202;Mtm1-212;Mtm1-205;Mtm1-211,Mtm1;Mtm1;Mtm1;Mtm1;Mtm1;Mtm1;Mtm1;Mtm1;Mtm1;Mtm1;Mtm1,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,17772,ENSMUSG00000031337,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
993,cg23335790,-0.00000421,0.0000172,-0.244480457,0.807020474,loss,ns,0.0000956,0.0000293,3.265111525,0.001216648,pos,ns,0.012844645,0.008579918,1.497059231,0.135395295,pos,ns,0.868396428,-0.000621492,0.000295063,-2.106304567,0.035981494,neg,ns,0.760289276,Syt7,Syt7_threeUTR,19,10426322,10426371,10426322,10426323,50,-,CGGCCACTACCCTTGAGTCTATCCCCAGCTCCACGGGAGAGCCGAAATGC,3' UTR,19,10389090,10448444,59355,1,Syt7-201,37232,Syt7-201;Syt7-208;Syt7-206;Syt7-203;Syt7-202;Syt7-210;Syt7-211;Syt7-204;Syt7-205;Syt7-207;Syt7-209;Syt7-213;Syt7-214;Syt7-215;Syt7-212,Syt7;Syt7;Syt7;Syt7;Syt7;Syt7;Syt7;Syt7;Syt7;Syt7;Syt7;Syt7;Syt7;Syt7;Syt7,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,9,10,54525,ENSMUSG00000024743,conserved gene and region,19,10426290,10426439,150,*,150,11,0.666666667,0.682100041,0.073333333,0.000000279,CpGisland,TRUE,U11,Tr-P
18934,cg01341452,-0.00000804,0.00000546,-1.473002846,0.141764867,loss,ns,0.0000303,0.00000927,3.263626816,0.001222826,pos,ns,0.006609365,0.002717013,2.432585389,0.015556969,pos,ns,1.80807501,-0.000225818,0.0000934,-2.416774631,0.016235883,neg,ns,0.889075798,Dach1,Dach1_Intron,14,97963669,97963718,97963669,97963670,50,-,CGATTTGGAATCTGCTCACAGTACTGCCAGCTTAACCAAAAAGGATTAAC,"Intron (Dach1-201/Dach1, intron 3 of 10)",14,97786853,98169543,382691,2,Dach1-201,205825,Dach1-201;Dach1-202;Dach1-203,Dach1;Dach1;Dach1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,76,13134,ENSMUSG00000055639,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16752,cg23405844,-0.0000145,0.00000454,-3.192525851,0.00155512,loss,ns,0.0000252,0.00000772,3.262945284,0.001225671,pos,ns,0.005350953,0.002261175,2.366447811,0.018574234,pos,ns,1.731089089,-0.000257482,0.0000778,-3.311172766,0.001038787,neg,ns,0.896486102,Abcc12,Abcc12_Intergenic_downstream,8,86403344,86403393,86403344,86403345,50,+,CGATTTAATGTTTTGAAAGAGACTTATTATCTTGTCAGGAATAATTTGAA,Distal Intergenic,8,86504583,86534747,30165,2,Abcc12-206,131354,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,244562,ENSMUSG00000036872,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25486,cg02694968,-0.0000117,0.00000716,-1.641152496,0.101779892,loss,ns,0.0000397,0.0000122,3.26288181,0.001225937,pos,ns,0.006134282,0.0035622,1.722048967,0.086058112,pos,ns,1.065208184,-0.000245812,0.000122504,-2.006567501,0.045663891,neg,ns,0.602684276,Rab9b,Rab9b_Exon,X,136861375,136861424,136861375,136861376,50,-,CGATCATCCACGCTGAAGGTCAAGAGGCAGCAGTCTGCTCCCCTGTAGAA,"Exon (Rab9b-201/Rab9b, exon 3 of 3)",20,136858147,136868755,10609,2,Rab9b-201,7331,Rab9b-201,Rab9b,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,319642,ENSMUSG00000043463,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8850,cg18199325,-0.0000378,0.00000633,-5.963058727,6.74E-09,loss,yes,-0.0000351,0.0000108,-3.262667083,0.001226835,neg,ns,-0.004653578,0.003151804,-1.476480672,0.140829971,neg,ns,0.851304909,-0.0000443,0.00010839,-0.408597936,0.683116852,neg,ns,0.841473327,Ldb1,Ldb1_Exon,19,46033284,46033333,46033284,46033285,50,-,CGTCCTCGTCCCCGAACTCCCCGCCCATCAGGGTGGGCTCCCCCACCACC,"Exon (Ldb1-207/Ldb1, exon 11 of 11)",19,46031570,46045210,13641,2,Ldb1-207,11877,Ldb1-207;Ldb1-206;Ldb1-202;Ldb1-208;Ldb1-201;Ldb1-205;Ldb1-203;Ldb1-204,Ldb1;Ldb1;Ldb1;Ldb1;Ldb1;Ldb1;Ldb1;Ldb1,0;0;0;0;0;0;1545;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,9,16825,ENSMUSG00000025223,conserved gene and region,19,46033191,46033306,116,*,116,12,0.637931035,1.01978022,0.103448276,1.21E-09,CpGisland,TRUE,U10,Tr-S
13253,cg02269623,-0.0000255,0.0000112,-2.27793318,0.023410997,loss,ns,0.000062,0.000019,3.261352555,0.001232345,pos,ns,0.007420335,0.005570086,1.332176078,0.183780843,pos,ns,0.735699761,-0.000143967,0.000191555,-0.751571995,0.452878688,neg,ns,0.783332745,Pebp4,Pebp4_Intron,14,69885760,69885809,69885808,69885809,50,+,ACCAGTGTTGGTGGCAGACAGAAAAACAGATTACACTTGAGTTCAAATCG,"Intron (Pebp4-201/Pebp4, intron 3 of 6)",14,69840420,70059918,219499,1,Pebp4-201,45340,Pebp4-201,Pebp4,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,14,14,73523,ENSMUSG00000022085,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27534,cg12945551,-0.0000145,0.00000624,-2.323224946,0.020813817,loss,ns,0.0000346,0.0000106,3.261308391,0.001232531,pos,ns,-0.001125941,0.003105549,-0.362557855,0.717182251,neg,ns,0.144370467,0.000115131,0.0001068,1.078010228,0.281867307,pos,ns,0.937251272,Gm11011,Gm11011_Intergenic_downstream,2,169296926,169296975,169296926,169296927,50,-,CGTAATGGATGAGATATTTACAGCAAAGCTGTTAAAACATTGAATAAAAT,Distal Intergenic,2,169582845,169587745,4901,2,Gm11011-201,290819,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,10,,NA,mapped to different genes,2,169296803,169296927,125,*,125,9,0.496,1.216216216,0.072,0.00000584,CpGisland,TRUE,U15,NS
15563,cg07265280,-0.00000854,0.00000779,-1.09608704,0.273891456,loss,ns,0.0000432,0.0000132,3.261268656,0.001232698,pos,ns,0.004139955,0.003876651,1.067920574,0.286387248,pos,ns,0.543046324,0.0000478,0.000133318,0.358609139,0.720131605,pos,ns,0.907778471,Adgrl3,Adgrl3_threeUTR,5,81794358,81794407,81794406,81794407,50,+,ATACCTGAGCAACTGTGTGCAAATCATAGACCGTGGCTATAACCATAACG,3' UTR,5,81020571,81796634,776064,1,Adgrl3-223,773787,Adgrl3-223;Adgrl3-203;Adgrl3-211;Adgrl3-217;Adgrl3-232;Adgrl3-207;Adgrl3-205;Adgrl3-206;Adgrl3-208;Adgrl3-212;Adgrl3-213;Adgrl3-214;Adgrl3-215;Adgrl3-216;Adgrl3-209;Adgrl3-218;Adgrl3-219;Adgrl3-204;Adgrl3-210;Adgrl3-201;Adgrl3-202;Adgrl3-220;Adgrl3-229;Adgrl3-235,Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,13,319387,ENSMUSG00000037605,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10554,cg22935354,-0.000022,0.0000109,-2.015398036,0.044725702,loss,ns,0.0000605,0.0000186,3.260210041,0.001237153,pos,ns,0.012389034,0.005436874,2.278705269,0.023364456,pos,ns,1.631444322,-0.000505489,0.000186974,-2.70352866,0.007239303,neg,ns,0.78475791,Gm47553,Gm47553_Intergenic_upstream,12,54334876,54334925,54334876,54334877,50,+,CGCTGATTAATTTCATGTTTAATCTAACTGATACTTCTGTAGCCTTTGCA,Distal Intergenic,12,54428077,54428556,480,1,Gm47553-201,-93152,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27248,cg06382285,0.000063,0.0000135,4.669618135,0.0000045,gain,ns,0.0000747,0.0000229,3.260134275,0.001237473,pos,ns,0.026869603,0.006710306,4.004229382,0.0000779,pos,ns,4.108299511,-0.000521415,0.000230767,-2.259487166,0.024547189,neg,ns,0.371744274,Nhs,Nhs_Intron,X,161908821,161908870,161908869,161908870,50,+,CACCTAATTGACCACTGGGAAATCAGGTGCCGGGAGACCTGGGCGGGACG,"Intron (Nhs-202/Nhs, intron 1 of 8)",20,161833296,162159730,326435,2,Nhs-202,250860,Nhs-202;Nhs-201,Nhs;Nhs,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,12,195727,ENSMUSG00000059493,conserved gene and region,X,161908852,161909038,187,*,187,18,0.673796791,0.848928121,0.096256685,9.78E-14,CpGisland,TRUE,U3,Pr-B
9708,cg27602966,0.0000272,0.00000324,8.395799251,1.68E-15,gain,yes,-0.0000179,0.0000055,-3.259952049,0.001238242,neg,ns,-0.00398631,0.00161127,-2.474017001,0.01389554,neg,ns,1.857124578,0.0000616,0.0000554,1.111160449,0.26736035,pos,ns,0.913621384,Tbc1d9b,Tbc1d9b_Exon,11,50140408,50140457,50140456,50140457,50,+,ACACTGGGAATGGCTGGAAAATAACTTGCTCCAGACACTGTCCATCTTCG,"Exon (Tbc1d9b-201/Tbc1d9b, exon 3 of 21)",11,50131396,50172030,40635,1,Tbc1d9b-201,9012,Tbc1d9b-201;Tbc1d9b-202;Tbc1d9b-207;Tbc1d9b-204;Tbc1d9b-205,Tbc1d9b;Tbc1d9b;Tbc1d9b;Tbc1d9b;Tbc1d9b,0;0;0;0;-4726,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,76795,ENSMUSG00000036644,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8832,cg23773983,-0.00000358,0.00000153,-2.344001547,0.019709347,loss,ns,0.00000844,0.00000259,3.258392167,0.00124484,pos,ns,0.002064969,0.000759291,2.719602521,0.006904573,pos,ns,2.160863155,-0.000055,0.0000261,-2.1069752,0.035922861,neg,ns,0.036606776,Atxn1,Atxn1_Promoter,13,45965100,45965149,45965148,45965149,50,-,TGTAAATGTGTAATAGAAGCCAAATATGGAGCAGTTGGCTGCCGCCGCCG,Promoter (<=1kb),13,45792329,45965008,172680,2,Atxn1-204,-141,Atxn1-201;Atxn1-202;Atxn1-203;Atxn1-204;Atxn1-206,Atxn1;Atxn1;Atxn1;Atxn1;Atxn1,0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,10,20238,ENSMUSG00000046876,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
12229,cg08435008,0.00000772,0.00000281,2.751574294,0.006279995,gain,ns,-0.0000155,0.00000477,-3.258247903,0.001245452,neg,ns,-0.00023561,0.001397214,-0.168628559,0.866198785,neg,ns,0.06238243,-0.0000112,0.0000481,-0.233658346,0.81540445,neg,ns,0.936209534,Ptch1,Ptch1_fiveUTR,13,63548101,63548150,63548149,63548150,50,-,TGTATCATGAGTTGAGGATTAAACATAGCCTCTTCTCCAATCTTCTGGCG,5' UTR,13,63508328,63565735,57408,2,Ptch1-201,17585,Ptch1-201;Ptch1-204;Ptch1-206;Ptch1-202;Ptch1-207;Ptch1-203;Ptch1-205;Ptch1-208,Ptch1;Ptch1;Ptch1;Ptch1;Ptch1;Ptch1;Ptch1;Ptch1,0;0;0;0;0;0;0;-2785,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,9,36,19206,ENSMUSG00000021466,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25626,cg09375284,-0.00000694,0.0000058,-1.196287987,0.23249835,loss,ns,-0.0000321,0.00000985,-3.256855506,0.001251372,neg,ns,0.002180009,0.002887003,0.75511163,0.450755309,pos,ns,0.346059149,-0.000351367,0.0000993,-3.539022018,0.000463129,neg,ns,0.841060049,Epo,Epo_Exon,5,137525243,137525292,137525291,137525292,50,-,CTGGGGGACACGCTGGAAGCCAAAGAATTTGCCAAACAATTCCTGGAGCG,"Exon (Gigyf1-201/Gigyf1, exon 22 of 24)",5,137483020,137533242,50223,2,Epo-202,7950,Epo-202;Gigyf1-202;Gigyf1-201;Gnb2-201;Gnb2-213;Gnb2-209;Gnb2-203;Gnb2-204;Gnb2-202;Gnb2-212;Gnb2-214;Gnb2-215;Gnb2-208;Gnb2-205;Gnb2-210;Gnb2-211;Gnb2-206;Gnb2-207,Epo;Gigyf1;Gigyf1;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2,0;6695;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,9,13856,ENSMUSG00000029711,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27965,cg10066933,0.000131792,0.0000123,10.69458103,6.27E-23,gain,yes,-0.0000682,0.0000209,-3.256597001,0.001252473,neg,ns,0.001003806,0.006133405,0.163662078,0.87010382,pos,ns,0.060428925,0.000289627,0.000210927,1.373114794,0.170709025,pos,ns,0.486422114,Plxna2,Plxna2_Intron,1,194635626,194635675,194635626,194635627,50,+,CGACCTTTAGATAATAAAGGGAATTCTGGGAGATTTCTGACAGGCCCATG,"Intron (Plxna2-201/Plxna2, intron 1 of 31)",1,194619825,194816869,197045,1,Plxna2-201,15801,Plxna2-201,Plxna2,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,4,18845,ENSMUSG00000026640,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25596,cg04784052,-0.0000133,0.00000574,-2.324227653,0.020759294,loss,ns,-0.0000317,0.00000975,-3.252609603,0.001269585,neg,ns,-0.00402843,0.002855689,-1.410668328,0.159345107,neg,ns,0.797661267,-0.000021,0.0000982,-0.213941828,0.830733068,neg,ns,0.74012491,Wnt4,Wnt4_Intergenic_downstream,4,137301720,137301769,137301720,137301721,50,+,CGGCACTTCGGAGGCAATTAGCAGCCCAGCTGAGCTAATCCCCCGCCTGG,Distal Intergenic,4,137277489,137299726,22238,1,Wnt4-201,24231,Wnt4-201,Wnt4,24231,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,22417,ENSMUSG00000036856,conserved gene and region,4,137301716,137301888,173,*,173,10,0.641618497,0.567213115,0.057803468,0.00000971,CpGisland,TRUE,U11,Tr-P
6822,cg05369916,0.0000217,0.00000563,3.85813064,0.00013901,gain,ns,-0.0000311,0.00000957,-3.251361622,0.001274985,neg,ns,0.012703538,0.002804316,4.529995437,0.00000843,pos,ns,5.074305703,-0.000345548,0.0000964,-3.583029326,0.000394265,neg,ns,0.643506083,Luc7l2,Luc7l2_threeUTR,6,38608181,38608230,38608229,38608230,50,+,GACTTAGCATCATGTGACAGAGACAGGAGTTCAAGAGACAGATCACCTCG,3' UTR,6,38551465,38609470,58006,1,Luc7l2-201,56716,Luc7l2-213;Luc7l2-208;Luc7l2-201;Luc7l2-209;Luc7l2-207;Luc7l2-204;Luc7l2-203,Luc7l2;Luc7l2;Luc7l2;Luc7l2;Luc7l2;Luc7l2;Luc7l2,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,10,192196,ENSMUSG00000029823,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17405,cg07250129,0.0000256,0.00000693,3.701518351,0.000253568,gain,ns,0.0000382,0.0000118,3.250156596,0.001280219,pos,ns,0.01259888,0.003447448,3.654552583,0.000302467,pos,ns,3.519322562,-0.000352315,0.000118557,-2.971683743,0.003193536,neg,ns,0.130925052,Tox3,Tox3_Intergenic_downstream,8,90121142,90121191,90121142,90121143,50,-,CGTTTGACTGGATTAGAATACTTGATGACAGTTTGGATAAGTTTGAGGCA,Distal Intergenic,8,90257946,90348126,90181,2,Tox3-202,226984,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,19,244579,ENSMUSG00000043668,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7088,cg11506040,0.0000631,0.00000879,7.176515896,5.31E-12,gain,yes,-0.0000485,0.0000149,-3.249189433,0.001284435,neg,ns,0.008267653,0.004373381,1.890448712,0.059630487,pos,ns,1.224531646,-0.000473617,0.0001504,-3.149041653,0.001797652,neg,ns,0.660495501,Slc7a2,Slc7a2_Exon,8,40908084,40908133,40908084,40908085,50,-,CGTGTAATCTATGCTATGGCGGAGGATGGGTTGCTTTTCAAATGTCTAGC,"Exon (Slc7a2-202/Slc7a2, exon 7 of 12)",8,40862396,40918056,55661,1,Slc7a2-202,45688,Slc7a2-202;Slc7a2-201;Slc7a2-203;Slc7a2-204,Slc7a2;Slc7a2;Slc7a2;Slc7a2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,11988,ENSMUSG00000031596,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24894,cg07464418,-0.0000555,0.0000132,-4.196458255,0.0000354,loss,ns,0.000073,0.0000225,3.248861597,0.001285867,pos,ns,0.006889508,0.006580228,1.047001404,0.295914575,pos,ns,0.528833644,-0.000362684,0.000226293,-1.602716261,0.110015703,neg,ns,0.679852571,Gm14986,Gm14986_Intergenic_downstream,X,129243418,129243467,129243418,129243419,50,+,CGTCCCAGATGTTGTTTTTGCAAAGCTCAATCCTTCTGCACAGATAATAG,Distal Intergenic,20,129517525,129518526,1002,2,Gm14986-201,275059,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,669120,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24781,cg26724535,-0.0000185,0.00000652,-2.835354098,0.00487834,loss,ns,0.000036,0.0000111,3.248775795,0.001286242,pos,ns,0.007697548,0.003246413,2.371093462,0.018346615,pos,ns,1.736444064,-0.000330561,0.000111644,-2.960853634,0.003304748,neg,ns,0.861860807,Gm43656,Gm43656_Intergenic_upstream,3,128450980,128451029,128450980,128450981,50,+,CGTTCTGTGCTATAAAAGACTGTCAAATGTCACACCCCAAGAGATGCAAC,Distal Intergenic,3,128280658,128281091,434,2,Gm43656-201,-169889,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,8,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13807,cg15530403,0.0000339,0.00000506,6.699328209,9.86E-11,gain,yes,-0.0000279,0.0000086,-3.24767366,0.001291068,neg,ns,0.007672254,0.002518953,3.045810903,0.00251979,pos,ns,2.598635652,-0.000320983,0.0000866,-3.705368935,0.000249909,neg,ns,0.874471157,Sp3,Sp3_Intron,2,72941880,72941929,72941928,72941929,50,+,CTCACACTCAGTAGCATGTGAAATTGCCATAGGACAAACAGTGCTAAACG,"Intron (Sp3-202/Sp3, intron 5 of 6)",2,72936427,72980446,44020,2,Sp3-202,38517,Sp3-202;Sp3-201;Sp3-204;Sp3-203;Sp3-205,Sp3;Sp3;Sp3;Sp3;Sp3,0;0;0;-796;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,6,20687,ENSMUSG00000027109,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25570,cg26335624,0.00000205,0.00000822,0.248998034,0.803527191,gain,ns,0.0000453,0.000014,3.247119249,0.001293501,pos,ns,0.005363103,0.00409104,1.310938835,0.1908487,pos,ns,0.719310795,0.0000876,0.000140691,0.622726189,0.533922281,pos,ns,0.7221488,Jag1,Jag1_Intergenic_upstream,2,137248099,137248148,137248099,137248100,50,+,CGTGCTTAAACCGCTTATTAAAGTCTAGACGCAACATAAAAGCACGTAAA,Distal Intergenic,2,137081456,137116644,35189,2,Jag1-201,-131455,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,16,16449,ENSMUSG00000027276,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6269,cg05362042,0.0000243,0.00000606,4.010403672,0.000076,gain,ns,0.0000334,0.0000103,3.246419234,0.001296581,pos,ns,0.010883826,0.003014908,3.610002465,0.000356937,pos,ns,3.447407826,-0.000169267,0.000103682,-1.63255447,0.103578024,neg,ns,0.113333552,Tshz3,Tshz3_Promoter,7,36690733,36690782,36690781,36690782,50,+,GCTGCCGCCAGTCTGGTCAATTTATCATGCAAATGTGGGTGCCCTCCGCG,Promoter (7-8kb),7,36698118,36773553,75436,1,Tshz3-201,-7336,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,58,243931,ENSMUSG00000021217,conserved gene and region,7,36690706,36690841,136,*,136,14,0.617647059,1.079977311,0.102941177,3.56E-11,CpGisland,TRUE,U13,Hc-P
12935,cg10996763,-0.00000308,0.00000402,-0.766336068,0.444059511,loss,ns,0.0000222,0.00000683,3.245625968,0.001300078,pos,ns,0.007767302,0.002001824,3.880112984,0.000127559,pos,ns,3.894289528,-0.000234321,0.0000688,-3.403717847,0.000752133,neg,ns,0.90393654,Cabcoco1,Cabcoco1_Intergenic_downstream,10,68430683,68430732,68430731,68430732,50,+,GCTTCAAACTGCATTATATAATTTCAGAAAATTGGTTTCACACTGAAACG,Downstream (<1kb),10,68430960,68525767,94808,2,Cabcoco1-202,95035,Cabcoco1-201;Cabcoco1-202,Cabcoco1;Cabcoco1,111164;95035,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,2,2,73287,ENSMUSG00000019945,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26557,cg25972097,0.0000161,0.00000528,3.044972583,0.002526617,gain,ns,-0.0000291,0.00000898,-3.245427911,0.001300953,neg,ns,-0.003016977,0.002629938,-1.147166646,0.252197346,neg,ns,0.598259489,0.00010018,0.0000904,1.107651916,0.268870858,pos,ns,0.844398744,Casz1,Casz1_Intron,4,148919181,148919230,148919229,148919230,50,-,CAGCGCAGGGCACTGAAAAACTGCTGGCACTGCCAAAAACCCTGTGTGCG,"Intron (Casz1-201/Casz1, intron 4 of 15)",4,148804429,148945129,140701,1,Casz1-201,114752,Casz1-201;Casz1-202;Casz1-206,Casz1;Casz1;Casz1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,94,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11937,cg15237969,0.0000194,0.000105071,0.184284032,0.853911131,gain,ns,0.000579191,0.000178502,3.244725344,0.00130406,pos,ns,0.083778013,0.052295096,1.602024286,0.110168685,pos,ns,0.957941835,-0.001790067,0.001798424,-0.995353145,0.320340829,neg,ns,0.467202881,Psmd14,Psmd14_Intron,2,61751408,61751457,61751456,61751457,50,+,TGAAAGAATTCATTTCCACTTTAATGACCTAGCCTTGCTGGGTTAGGACG,"Intron (Psmd14-201/Psmd14, intron 3 of 11)",2,61711694,61800376,88683,1,Psmd14-201,39714,Psmd14-201;Psmd14-206;Psmd14-207;Psmd14-203,Psmd14;Psmd14;Psmd14;Psmd14,0;0;0;35585,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,9,59029,ENSMUSG00000026914,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24829,cg22807090,-0.0000281,0.00000625,-4.494989431,0.00000984,loss,ns,-0.0000344,0.0000106,-3.244483152,0.001305132,neg,ns,0.010739999,0.003108799,3.454710442,0.000627629,pos,ns,3.202296956,-0.000554981,0.000106911,-5.191041618,0.000000379,neg,yes,0.859427634,Phc2,Phc2_threeUTR,4,128745840,128745889,128745840,128745841,50,+,CGGGTGGACTTTGCCTATAAGTTCAAGCGTTCCAAGCGCTTCTGTTCCAT,3' UTR,4,128654702,128752881,98180,1,Phc2-201,91138,Phc2-201;Phc2-203;Phc2-209;Phc2-202;Phc2-208;Phc2-205;Phc2-210;Phc2-204;Phc2-206,Phc2;Phc2;Phc2;Phc2;Phc2;Phc2;Phc2;Phc2;Phc2,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,13,54383,ENSMUSG00000028796,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10974,cg02156108,-0.0000342,0.000016,-2.134950317,0.033548928,loss,ns,0.0000884,0.0000272,3.244252656,0.001306154,pos,ns,0.016692512,0.007981983,2.091273739,0.037317287,pos,ns,1.428089937,-0.000572953,0.0002745,-2.087261213,0.037680974,neg,ns,0.577142161,Plcl1,Plcl1_Intron,1,55937034,55937083,55937082,55937083,50,+,CCTGAAACTGCACTAGTTTACAATAATTTTATTACTTTATTAATTAAACG,"Intron (9130227L01Rik-202/9130227L01Rik-202, intron 2 of 5)",1,55702025,55735227,33203,1,Plcl1-202,235009,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,7,227120,ENSMUSG00000038349,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1716,cg09257340,0.0000646,0.0000484,1.334624438,0.182978707,gain,ns,-0.00026684,0.0000823,-3.242548787,0.001313729,neg,ns,-0.025462907,0.024109149,-1.056151238,0.291721495,neg,ns,0.535031569,-0.000255066,0.000829112,-0.307637276,0.758564933,neg,ns,0.694189911,Tle4,Tle4_Intergenic_upstream,19,14777390,14777439,14777390,14777391,50,-,CGCCTGCGTCAGATAAACTGTCACCCAAATTGCAAACTAATTAGTGATTC,Distal Intergenic,19,14448150,14598051,149902,2,Tle4-201,-179388,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,29,21888,ENSMUSG00000024642,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7690,cg09871285,-0.00007,0.0000125,-5.604457327,4.62E-08,loss,yes,0.0000687,0.0000212,3.241621754,0.001317867,pos,ns,-0.005630542,0.006213207,-0.906221614,0.365522389,neg,ns,0.437086017,0.000401841,0.000213672,1.880646008,0.060957381,pos,ns,0.745232878,Gm49734,Gm49734_Intron,16,43709593,43709642,43709641,43709642,50,-,GGCTCTCTAGGGAGTAGCATGAAATGCTGGTTTTCAAAACCTGAGCAGCG,"Intron (Gm49735-201/Gm49735-201, intron 1 of 2)",16,43689251,43689396,146,2,Gm49734-201,-20246,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
24993,cg08302351,-0.00000921,0.00000509,-1.8078489,0.071599129,loss,ns,0.000028,0.00000865,3.241018853,0.001320565,pos,ns,0.001708555,0.002534514,0.674115456,0.500740266,pos,ns,0.300387484,0.000101953,0.0000872,1.16969499,0.243022265,pos,ns,0.896483287,Lef1,Lef1_Intron,3,131137502,131137551,131137502,131137503,50,+,CGCTGACATGCCACATCTCGATGACAATTATAGACATATGAATGATGTGG,"Intron (Lef1-201/Lef1, intron 3 of 11)",3,131110471,131224356,113886,1,Lef1-201,27031,Lef1-201;Lef1-202;Lef1-204;Lef1-203;Lef1-205;Lef1-208;Lef1-207,Lef1;Lef1;Lef1;Lef1;Lef1;Lef1;Lef1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,9,16842,ENSMUSG00000027985,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3171,cg00623160,0.0000146,0.00000507,2.874199248,0.00433051,gain,ns,-0.0000279,0.00000861,-3.240053868,0.001324894,neg,ns,-0.00385707,0.002521114,-1.52990659,0.127059607,neg,ns,0.895992493,0.0000936,0.0000867,1.07989475,0.281028502,pos,ns,0.756978942,Eif4a2,Eif4a2_threeUTR,16,23112413,23112462,23112413,23112414,50,+,CGTGGAATCATAAGCGAAACAGCACACTGTTTGAATAAAGAGCGAGTCGG,3' UTR,16,23107444,23113947,6504,1,Eif4a2-201,4969,Eif4a2-201;Eif4a2-222;Eif4a2-216;Eif4a2-210;Eif4a2-223;Eif4a2-213;Eif4a2-208;Eif4a2-224;Eif4a2-202;Eif4a2-212;Eif4a2-206;Eif4a2-220;Eif4a2-218;Eif4a2-203;Eif4a2-209;Eif4a2-207;Eif4a2-214;Eif4a2-211;Eif4a2-204;Eif4a2-217;Eif4a2-221;Eif4a2-205;Eif4a2-219;Eif4a2-215;Rfc4-201;Rfc4-203;Rfc4-205;Rfc4-204,Eif4a2;Eif4a2;Eif4a2;Eif4a2;Eif4a2;Eif4a2;Eif4a2;Eif4a2;Eif4a2;Eif4a2;Eif4a2;Eif4a2;Eif4a2;Eif4a2;Eif4a2;Eif4a2;Eif4a2;Eif4a2;Eif4a2;Eif4a2;Eif4a2;Eif4a2;Eif4a2;Eif4a2;Rfc4;Rfc4;Rfc4;Rfc4,0;0;0;4655;0;4654;4654;4654;0;4646;4642;4640;4636;0;0;4634;4496;3831;3182;2437;2368;2180;1741;1714;15275;15255;2282;15229,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,3,13682,ENSMUSG00000022884,conserved gene and region,16,23112355,23112461,107,*,107,10,0.476635514,1.759868421,0.093457944,0.000000121,CpGisland,TRUE,U10,Tr-S
23559,cg08574252,-0.000000828,0.0000108,-0.076668498,0.938936723,loss,ns,0.0000594,0.0000183,3.239704938,0.001326462,pos,ns,-0.000921103,0.005373679,-0.17141016,0.8640131,neg,ns,0.063479673,-0.0000315,0.0001848,-0.170256037,0.864919844,neg,ns,0.687152755,Dpyd,Dpyd_Intron,3,118888051,118888100,118888051,118888052,50,-,CGATGGAGATAAGTGTTTTAATTACTTTTTTAATGTCTGTGCTTTTGTAT,"Intron (Dpyd-201/Dpyd, intron 8 of 22)",3,118562129,119432924,870796,1,Dpyd-201,325922,Dpyd-201;Dpyd-203,Dpyd;Dpyd,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,14,29,99586,ENSMUSG00000033308,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19728,cg13835968,0.00000139,0.00000242,0.573854208,0.566482569,gain,ns,-0.0000133,0.00000411,-3.239502823,0.001327372,neg,ns,-0.003455155,0.001204567,-2.868378885,0.004408855,neg,ns,2.355674233,0.0000325,0.0000414,0.785013026,0.433045441,pos,ns,0.916275933,Stag1,Stag1_threeUTR,9,100954222,100954271,100954222,100954223,50,+,CGGGGTCTAATGGAGGAAGATGCTGAGCCCATCTTTGAAGATGTGATGAT,3' UTR,9,100643448,100958545,315098,1,Stag1-206,310774,Stag1-206;Stag1-201;Stag1-216;Stag1-203;Stag1-215;Stag1-214;Stag1-211;Stag1-217,Stag1;Stag1;Stag1;Stag1;Stag1;Stag1;Stag1;Stag1,0;0;0;0;0;0;0;-1498,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,15,20842,ENSMUSG00000037286,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15688,cg13290565,-0.0000205,0.00000699,-2.937648197,0.003555065,loss,ns,0.0000385,0.0000119,3.239224208,0.001328626,pos,ns,0.003316682,0.003477656,0.953711796,0.340972603,pos,ns,0.467280515,-0.0000339,0.000119596,-0.283743402,0.776796441,neg,ns,0.914217718,Gm14741,Gm14741_Intergenic_upstream,X,82815603,82815652,82815651,82815652,50,+,CATCTGTTTCAGCTATTGAACTGTATTCACGTTTTGCCAAGTTGATGTCG,Distal Intergenic,20,82757430,82758438,1009,2,Gm14741-201,-57165,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,11,100415954,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11071,cg26713204,-0.0000227,0.00000808,-2.812421082,0.005230622,loss,ns,0.0000445,0.0000137,3.239044249,0.001329437,pos,ns,0.011761602,0.004021637,2.92458099,0.003703534,pos,ns,2.431383632,-0.000400508,0.000138304,-2.895859314,0.004049972,neg,ns,0.866067795,Gm13518,Gm13518_Intergenic_downstream,2,56519639,56519688,56519639,56519640,50,-,CGTGGTTCACGATGGCACATAACGCACACATCTCATTACAGGTGAAATAT,Distal Intergenic,2,56039853,56040085,233,1,Gm13518-201,479835,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,37,37,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4783,cg09071556,-0.0000368,0.0000103,-3.571880569,0.000410739,loss,ns,0.0000566,0.0000175,3.2388852,0.001330154,pos,ns,-0.000105931,0.005122259,-0.020680505,0.983513825,neg,ns,0.007219531,0.00000374,0.000176154,0.021206246,0.983094775,pos,ns,0.844267925,Prkg1,Prkg1_threeUTR,19,30565386,30565435,30565386,30565387,50,-,CGCAGCAAGCTAAGAAAGGACAACATTTTGAGGTGTGTTTGTCTTTGTCA,3' UTR,19,30564489,31765033,1200545,2,Prkg1-201,1199598,Prkg1-201;Prkg1-208;Prkg1-202;Prkg1-207;Prkg1-204,Prkg1;Prkg1;Prkg1;Prkg1;Prkg1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,13,19091,ENSMUSG00000052920,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27466,cg10726594,-0.00000948,0.00000279,-3.396281573,0.000772107,loss,ns,0.0000154,0.00000474,3.238759497,0.001330721,pos,ns,0.001238624,0.00138914,0.89164855,0.373272888,pos,ns,0.427973553,0.0000348,0.0000478,0.727453595,0.467497166,pos,ns,0.941511978,Pbx1,Pbx1_Intron,1,168310224,168310273,168310224,168310225,50,-,CGTAATGTATTGTCAGCGTACCCAGCAATGAGGGGACATTAATTTCAATT,"Intron (Pbx1-208/Pbx1, intron 2 of 7)",1,168119364,168432270,312907,2,Pbx1-208,121997,Pbx1-208;Pbx1-205;Pbx1-206;Pbx1-201;Pbx1-202;Pbx1-204,Pbx1;Pbx1;Pbx1;Pbx1;Pbx1;Pbx1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,84,18514,ENSMUSG00000052534,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2903,cg09401622,-0.000000692,0.00000191,-0.36302076,0.716836777,loss,ns,0.0000105,0.00000324,3.236556472,0.001340693,pos,ns,0.003956831,0.00094845,4.171890242,0.0000393,pos,ns,4.405966184,-0.0000923,0.0000326,-2.829138919,0.004971619,neg,ns,0.954401014,Lrmda,Lrmda_Intron,14,22037372,22037421,22037420,22037421,50,+,CATTTGAAACTGTCACGCATTAATAATTGCGAAATCCTGTAGATACTGCG,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,17660,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206,Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
812,cg25634661,0.00017351,0.0000227,7.659738884,2.40E-13,gain,yes,0.000124547,0.0000385,3.236401912,0.001341395,pos,ns,0.060000953,0.011274262,5.321940779,0.000000197,pos,ns,6.704922334,-0.001451454,0.000387721,-3.743553741,0.000216215,neg,ns,0.686543805,Chd7,Chd7_Exon,4,8826474,8826523,8826474,8826475,50,+,CGGAGAGTTCCAGGGAGTATAAAAACAATAACAAACTCAGGGAATACCAG,"Exon (Chd7-201/Chd7, exon 11 of 38)",4,8690921,8866810,175890,1,Chd7-201,135553,Chd7-201;Chd7-202;Chd7-206,Chd7;Chd7;Chd7,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,16,320790,ENSMUSG00000041235,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11064,cg27463586,0.0000159,0.0000123,1.29437338,0.196499841,gain,ns,0.0000675,0.0000209,3.236212947,0.001342254,pos,ns,0.012712998,0.006109005,2.081025861,0.038252145,pos,ns,1.417344211,-0.0000948,0.000210088,-0.451229266,0.652139804,neg,ns,0.773711308,Nkx2-1,Nkx2-1_Intergenic_downstream,12,56482856,56482905,56482904,56482905,50,-,GACCCTCCGGTGTACTTACTACATAATGCTTTAAAAACCCAGCTAAAACG,Distal Intergenic,12,56531958,56535106,3149,2,Nkx2-1-202,52250,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,29,21869,ENSMUSG00000001496,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1767,cg03345607,-0.0000189,0.00000673,-2.813947128,0.005206481,loss,ns,0.000037,0.0000114,3.234918194,0.001348154,pos,ns,0.008159853,0.003351532,2.434663821,0.015469614,pos,ns,1.810520512,-0.000171245,0.000115259,-1.48573786,0.138364701,neg,ns,0.865452075,Foxp2,Foxp2_Intron,6,15123751,15123800,15123751,15123752,50,+,CGATTTTGTATTAGATGAAAAATGAAAATAGACTGTGTACTGGTAAATAG,"Intron (Foxp2-207/Foxp2, intron 3 of 18)",6,14901349,15441977,540629,1,Foxp2-207,222402,Foxp2-207;Foxp2-213;Foxp2-208;Foxp2-211;Foxp2-217,Foxp2;Foxp2;Foxp2;Foxp2;Foxp2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,38,65,114142,ENSMUSG00000029563,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22531,cg00787186,-0.0000115,0.00000798,-1.437925812,0.151463796,loss,ns,0.0000439,0.0000136,3.233657881,0.00135392,pos,ns,0.004597303,0.003972888,1.157169124,0.248094127,pos,ns,0.605383516,-0.0000278,0.000136627,-0.203756684,0.838677334,neg,ns,0.865757581,Rps4l-ps,Rps4l-ps_Intron,7,114963223,114963272,114963271,114963272,50,+,ATAGCAAACCTTTAGTTTGCATTACAAGTGTTAATATATGCAGAGCCCCG,"Intron (A730082K24Rik-203/A730082K24Rik-203, intron 2 of 3)",7,114926959,114927726,768,2,Rps4l-ps-201,-35497,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,19,627967,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14737,cg02775328,-0.00000441,0.00000303,-1.456820092,0.14617818,loss,ns,0.0000166,0.00000514,3.233137799,0.001356306,pos,ns,0.004827037,0.001507161,3.202735446,0.001502747,pos,ns,2.823114051,-0.000135185,0.0000518,-2.608189723,0.009543047,neg,ns,0.935036277,2210408I21Rik,2210408I21Rik_Intron,13,77490771,77490820,77490771,77490772,50,-,CGGCACTTTTAATTTGCAAAGTGCATTTTCATTATGAATGGCAGTTTAAT,"Intron (2210408I21Rik-201/2210408I21Rik, intron 19 of 19)",13,77135540,77613784,478245,1,2210408I21Rik-201,355231,2210408I21Rik-201,2210408I21Rik,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,19,20,72371,ENSMUSG00000071252,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21405,cg13138766,-0.00000778,0.00000419,-1.856003364,0.064401881,loss,ns,-0.000023,0.00000712,-3.232987963,0.001356994,neg,ns,0.000252095,0.002085431,0.120883828,0.903861365,pos,ns,0.043898177,-0.0000941,0.0000717,-1.312125553,0.190448525,neg,ns,0.923834317,Ahcyl1,Ahcyl1_Exon,3,107674078,107674127,107674078,107674079,50,-,CGTTTCCTGAGTGAAATCAGAGCAGACATGTCTGTGAAAGAACAGAGGAT,"Exon (Ahcyl1-203/Ahcyl1, exon 3 of 15)",3,107663118,107677767,14650,2,Ahcyl1-203,3640,Ahcyl1-203;Ahcyl1-201;Ahcyl1-205;Ahcyl1-206;Ahcyl1-208;Ahcyl1-204,Ahcyl1;Ahcyl1;Ahcyl1;Ahcyl1;Ahcyl1;Ahcyl1,0;0;-3504;-4569;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,4,229709,ENSMUSG00000027893,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5225,cg24332529,0.000000839,0.00000319,0.26283259,0.792854206,gain,ns,-0.0000175,0.00000542,-3.232661046,0.001358496,neg,ns,-0.001786756,0.00158807,-1.125111679,0.261412067,neg,ns,0.58267437,-0.0000109,0.0000546,-0.19949779,0.842004165,neg,ns,0.900875211,Depdc5,Depdc5_Exon,5,32959269,32959318,32959317,32959318,50,-,CTGTGACTTCAGGACGGGGCCTTCTTTATGGAGTTTGTCCGCAGCCCACG,"Exon (Depdc5-202/Depdc5, exon 34 of 43)",5,32863721,32994236,130516,1,Depdc5-202,95548,Depdc5-201;Depdc5-202;Depdc5-204;Depdc5-217;Depdc5-205;Depdc5-206;Depdc5-210;Depdc5-209,Depdc5;Depdc5;Depdc5;Depdc5;Depdc5;Depdc5;Depdc5;Depdc5,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,7,277854,ENSMUSG00000037426,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25264,cg08833820,-0.0000304,0.0000147,-2.064498046,0.039802029,loss,ns,0.0000809,0.000025,3.232223587,0.001360509,pos,ns,0.023690229,0.007332841,3.230702716,0.001367529,pos,ns,2.86406354,-0.000456751,0.000252176,-1.811239756,0.071071524,neg,ns,0.630737747,Cxxc4,Cxxc4_Exon,3,134258035,134258084,134258083,134258084,50,+,CTTGCTCTTTTTTTATAGAGAACACCTGTTCCCAGCGCTGAAGCATTCCG,"Exon (Cxxc4-204/Cxxc4, exon 3 of 3)",3,134236484,134259620,23137,1,Cxxc4-204,21551,Cxxc4-204;Cxxc4-203;Cxxc4-201,Cxxc4;Cxxc4;Cxxc4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,18,20,319478,ENSMUSG00000044365,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
327,cg27249970,0.0000515,0.0000301,1.713981817,0.087531645,gain,ns,0.000165115,0.0000511,3.231895293,0.001362022,pos,ns,0.016578043,0.014967426,1.107608143,0.268889741,pos,ns,0.570425768,-0.000114362,0.000514729,-0.222178615,0.824321141,neg,ns,0.429254189,Klhl29,Klhl29_Intron,12,5119672,5119721,5119672,5119673,50,-,CGGAAATCAAAAGCCCATTTGGAGAAAAGAAGGCTCAGATTAAAGTCACT,"Intron (Klhl29-201/Klhl29, intron 5 of 13)",12,5077472,5375682,298211,2,Klhl29-201,255961,Klhl29-201;Klhl29-202,Klhl29;Klhl29,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,23,208439,ENSMUSG00000020627,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
17993,cg10294846,-0.0000174,0.00000696,-2.508028058,0.012651369,loss,ns,0.0000382,0.0000118,3.230783526,0.001367155,pos,ns,0.006406535,0.003462581,1.850219717,0.065233286,pos,ns,1.185530747,0.0000168,0.000119078,0.140735839,0.888170035,pos,ns,0.901169646,Yaf2,Yaf2_threeUTR,15,93285551,93285600,93285599,93285600,50,-,ATGACTGTCAGATCTCCAACAGTAACTTCCAAATGCTGAGCACTACTCCG,3' UTR,15,93284278,93336808,52531,2,Yaf2-201,51208,Yaf2-201;Yaf2-202,Yaf2;Yaf2,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,3,67057,ENSMUSG00000022634,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18283,cg09742670,-0.00000262,0.00000903,-0.289922301,0.772069506,loss,ns,0.0000495,0.0000153,3.229040442,0.001375239,pos,ns,0.002520839,0.004493066,0.561050977,0.575168098,pos,ns,0.24020521,-0.0000127,0.000154516,-0.082259911,0.93449312,neg,ns,0.811127877,Gm48316,Gm48316_Intergenic_upstream,13,94680646,94680695,94680646,94680647,50,+,CGGCTTTGATTAGCACCATTGCTTTTCAAGTCGACGTTGGCTGAGGGGCT,Distal Intergenic,13,94752270,94752593,324,1,Gm48316-201,-71575,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,36,42,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2408,cg03650138,0.0000234,0.0000103,2.277312287,0.023448482,gain,ns,0.0000563,0.0000175,3.228914264,0.001375826,pos,ns,0.006758681,0.005112318,1.322038304,0.18713006,pos,ns,0.727856444,-0.0000627,0.000175812,-0.356728747,0.721537572,neg,ns,0.766929146,Fosb,Fosb_Exon,7,19307348,19307397,19307396,19307397,50,-,GGGTTGCACAAGCCACTGGAGGTCCTGGCTGGTTGTGATCGCGGTGACCG,"Exon (Fosb-201/Fosb, exon 2 of 4)",7,19302696,19310051,7356,2,Fosb-201,2654,Fosb-201;Fosb-202;Fosb-203;Fosb-205;Fosb-207;Fosb-206;Fosb-204,Fosb;Fosb;Fosb;Fosb;Fosb;Fosb;Fosb,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,13,14282,ENSMUSG00000003545,mapped to different genes,7,19307356,19307554,199,*,199,14,0.592964824,0.806134259,0.070351759,6.46E-09,CpGisland,TRUE,U13,Hc-P
25810,cg22756866,0.0000743,0.0000101,7.385657373,1.41E-12,gain,yes,-0.0000552,0.0000171,-3.227604656,0.001381932,neg,ns,-0.016579481,0.005010145,-3.30918162,0.001045947,neg,ns,2.980490432,0.000530626,0.000172298,3.079689439,0.002257682,pos,ns,0.232329157,Uncx,Uncx_Intergenic_downstream,5,139550519,139550568,139550567,139550568,50,-,CATTTTTCTTTCTAATTACGGAGGTGTCAGGTCGAGCTGTCATGCAGGCG,Downstream (2-3kb),5,139543898,139545268,1371,1,Uncx-202,6670,Uncx-201,Uncx,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,59,88,22255,ENSMUSG00000029546,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
2363,cg18966350,0.00000459,0.00000654,0.701957985,0.48323205,gain,ns,0.0000359,0.0000111,3.226255552,0.001388248,pos,ns,0.004694551,0.003255877,1.441870154,0.150348466,pos,ns,0.822900997,-0.000069,0.000111969,-0.616105097,0.538277277,neg,ns,0.901462962,Tfap2d,Tfap2d_Exon,1,19166125,19166174,19166125,19166126,50,-,CGGAAAACTTCAGAGGCTGCCGTGAAAGAGGGCAAAACAGAAAAGACAGA,"Exon (Tfap2d-201/Tfap2d, exon 8 of 8)",1,19103022,19166346,63325,1,Tfap2d-201,63103,Tfap2d-201,Tfap2d,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,14,23,226896,ENSMUSG00000042596,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26926,cg15741130,0.0000507,0.000035,1.447468212,0.148776337,gain,ns,0.000191781,0.0000595,3.225705776,0.001390829,pos,ns,0.035181357,0.017418042,2.0198227,0.044261786,pos,ns,1.353971068,0.000286401,0.000599005,0.478127479,0.632896468,pos,ns,0.317829695,Cacna1e,Cacna1e_fiveUTR,1,154725907,154725956,154725907,154725908,50,-,CGAAGCGAGCCATCCTGAGGTTTAAACAGACAGAAGACACACAAAGGTGA,Promoter (<=1kb),1,154392519,154725920,333402,2,Cacna1e-201,0,Cacna1e-203;Cacna1e-201;Cacna1e-207;Cacna1e-206;Cacna1e-209;Cacna1e-204,Cacna1e;Cacna1e;Cacna1e;Cacna1e;Cacna1e;Cacna1e,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,9,19,12290,ENSMUSG00000004110,conserved gene but different region,1,154725658,154725913,256,*,256,21,0.6015625,0.907341772,0.08203125,1.74E-14,CpGisland,TRUE,U13,Hc-P
22964,cg14769599,-0.00000111,0.00000094,-1.177000044,0.240098402,loss,ns,0.00000515,0.0000016,3.224760279,0.001395279,pos,ns,0.000696584,0.000467999,1.488431034,0.137653796,pos,ns,0.861211807,-0.0000238,0.0000161,-1.476121711,0.140926245,neg,ns,0.970683678,Ncapg2,Ncapg2_Exon,12,116425797,116425846,116425797,116425798,50,-,CGATCAAATGCTGCATTGTTGTTTGTTGAAGCATTTCCTATTAGGGATCC,"Exon (Ncapg2-201/Ncapg2, exon 12 of 29)",12,116405402,116461611,56210,1,Ncapg2-201,20395,Ncapg2-201,Ncapg2,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,76044,ENSMUSG00000042029,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3354,cg05262711,0.0000379,0.00002,1.89186303,0.059441047,gain,ns,-0.00010968,0.000034,-3.224541564,0.001396311,neg,ns,0.063813852,0.009964953,6.403828733,5.61E-10,pos,ns,9.251096352,-0.002176373,0.000342694,-6.350778381,7.62E-10,neg,yes,0.676100294,Srrm2,Srrm2_fiveUTR,17,23808069,23808118,23808069,23808070,50,-,CGAGGAACAGCAAATTCAGGAAAAAGTGGCGACCTTTCGACTCATGTTGC,Promoter (<=1kb),17,23808098,23808708,611,1,Srrm2-208,0,Srrm2-206;Srrm2-210;Srrm2-201;Srrm2-212;Srrm2-211;Srrm2-208;Srrm2-203;Srrm2-207,Srrm2;Srrm2;Srrm2;Srrm2;Srrm2;Srrm2;Srrm2;Srrm2,0;0;0;0;0;0;0;-3782,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,13,75956,ENSMUSG00000039218,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3826,cg17276603,0.000019,0.00000872,2.18278168,0.029801919,gain,ns,0.0000477,0.0000148,3.223171294,0.001402788,pos,ns,0.015010588,0.004338096,3.460179197,0.000615487,pos,ns,3.210781329,-0.000212885,0.000149187,-1.42696778,0.154595603,neg,ns,0.287063154,Celf4,Celf4_Exon,18,25537664,25537713,25537712,25537713,50,-,AGTGGGCCCTCACGTGAAGGGGGCTGGCGCAGGCAGCTACTACCTCCTCG,"Exon (Celf4-202/Celf4, exon 3 of 13)",18,25477632,25753983,276352,2,Celf4-202,216270,Celf4-202;Celf4-201;Celf4-203;Celf4-207;Celf4-206;Celf4-209,Celf4;Celf4;Celf4;Celf4;Celf4;Celf4,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,31,59,108013,ENSMUSG00000024268,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
24036,cg00566395,-0.0000307,0.00000673,-4.556396006,0.00000749,loss,ns,-0.0000369,0.0000114,-3.223116274,0.001403048,neg,ns,0.004568255,0.003351493,1.363050557,0.173855784,pos,ns,0.759810855,-0.000513726,0.000115258,-4.457200708,0.0000116,neg,ns,0.837761798,Ubfd1,Ubfd1_threeUTR,7,122078451,122078500,122078451,122078452,50,+,CGTTTCAGTTGGGCCCCACGGAAGCCTCTTACTACTGGGTGTACTGGGTT,3' UTR,7,122067175,122082194,15020,1,Ubfd1-201,11276,Ubfd1-201;Ubfd1-204;Ubfd1-205,Ubfd1;Ubfd1;Ubfd1,0;11243;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,2,28018,ENSMUSG00000030870,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11072,cg03023666,-0.0000122,0.0000085,-1.435063004,0.152277263,loss,ns,0.0000465,0.0000144,3.222401083,0.00140644,pos,ns,0.016317669,0.004229224,3.858312878,0.000138912,pos,ns,3.857261226,-0.000523553,0.000145443,-3.599724256,0.000370751,neg,ns,0.855495127,Gm13518,Gm13518_Intergenic_downstream,2,56519648,56519697,56519648,56519649,50,+,CGATGGCACATAACGCACACATCTCATTACAGGTGAAATATTCTAACTGC,Distal Intergenic,2,56039853,56040085,233,1,Gm13518-201,479795,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,37,37,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13407,cg05108467,0.000205876,0.0000203,10.14545059,4.51E-21,gain,yes,-0.000111083,0.0000345,-3.222193703,0.001407426,neg,ns,-0.013107422,0.010099782,-1.297792543,0.195323454,neg,ns,0.709245605,0.000579312,0.000347331,1.667898494,0.096345632,pos,ns,0.370357724,Nr2f2,Nr2f2_fiveUTR,7,70366545,70366594,70366545,70366546,50,-,CGTTGTTACACCTTGTTTGGGGCTGGAAAGACGAGACTTTAAAAACACCC,Promoter (<=1kb),7,70354439,70366735,12297,2,Nr2f2-202,141,Nr2f2-202,Nr2f2,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,69,11819,ENSMUSG00000030551,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
10767,cg21958171,-0.0000121,0.00000256,-4.74740863,0.00000315,loss,ns,-0.000014,0.00000435,-3.220802033,0.001414052,neg,ns,0.000547836,0.001273673,0.43012324,0.667404846,pos,ns,0.175610644,-0.000108347,0.0000438,-2.473592077,0.013911748,neg,ns,0.950720272,Nsd1,Nsd1_Exon,13,55277361,55277410,55277361,55277362,50,+,CGCCCAATCACAGCAGGGTTAGAACTAACATTGCATGCAGTCCGCCCGAG,"Exon (Nsd1-202/Nsd1, exon 4 of 5)",13,55209782,55315755,105974,1,Nsd1-207,67579,Nsd1-207;Nsd1-201;Nsd1-202,Nsd1;Nsd1;Nsd1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,7,18193,ENSMUSG00000021488,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23367,cg06245192,-0.0000136,0.00000601,-2.265140554,0.024193968,loss,ns,0.0000329,0.0000102,3.220510062,0.001415446,pos,ns,0.000333063,0.002990066,0.111389762,0.911379364,pos,ns,0.040300809,0.0000471,0.000102828,0.458477085,0.646930969,pos,ns,0.903436006,Sox21,Sox21_Intergenic_downstream,14,118194473,118194522,118194473,118194474,50,+,CGTGAAATTAAATGTTTGACAGAGTGAGAAAAATATACAGACTTTGGAGA,Distal Intergenic,14,118233232,118237030,3799,2,Sox21-201,42508,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,26,27,223227,ENSMUSG00000061517,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20888,cg00777340,0.0000858,0.00000755,11.37630205,2.71E-25,gain,yes,-0.0000413,0.0000128,-3.219875183,0.001418482,neg,ns,0.002653829,0.003755289,0.706690992,0.480289358,pos,ns,0.318497036,0.000289255,0.000129144,2.239787275,0.02581334,pos,ns,0.224533129,Pax6,Pax6_Exon,2,105682386,105682435,105682386,105682387,50,+,CGCCTATTTCCAGAAATTAAGCTCAAACTTGACGTGCAGCTAGTTTTATT,"Exon (Pax6-221/Pax6, exon 1 of 2)",2,105668900,105697364,28465,1,Pax6-206,13486,Pax6-206;Pax6-207;Pax6-210;Pax6-214;Pax6-208;Pax6-202;Pax6-205;Pax6-225;Pax6-204;Pax6-201;Pax6-203;Pax6-224;Pax6-219;Pax6-221;Pax6-213;Pax6-211;Pax6-222;Pax6-212;Pax6-215;Pax6-223;Pax6-209;Pax6-216,Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,31,78,18508,ENSMUSG00000027168,conserved gene but different region,2,105682176,105682419,244,*,244,18,0.524590164,1.074626866,0.073770492,1.12E-11,CpGisland,TRUE,NA,NRS
4423,cg05090858,0.0000182,0.00000399,4.564584547,0.00000723,gain,ns,-0.0000218,0.00000678,-3.2192228,0.001421608,neg,ns,-0.002576699,0.001985805,-1.297558869,0.195403685,neg,ns,0.70906725,0.000308043,0.0000683,4.5106907,0.00000918,pos,ns,0.864471669,Ddx31,Ddx31_Exon,2,28875760,28875809,28875808,28875809,50,+,GGAGCAGCCTGCTCATTTTGGCTCCTTCGGAGGCAGAATATGTCAACTCG,"Exon (Ddx31-201/Ddx31, exon 16 of 20)",2,28840459,28905571,65113,1,Ddx31-201,35301,Ddx31-201,Ddx31,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,5,227674,ENSMUSG00000026806,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11451,cg27547112,0.00000731,0.00000246,2.970758625,0.003202901,gain,ns,-0.0000134,0.00000418,-3.218166009,0.001426684,neg,ns,0.001915308,0.001224115,1.564647033,0.118685906,pos,ns,0.925600851,-0.000064,0.0000421,-1.520011492,0.12952734,neg,ns,0.884339601,Hnrnpk,Hnrnpk_Exon,13,58395891,58395940,58395939,58395940,50,-,TTTTCAGGTCCTGCAACACCATACCCACACTGCAGCCATTTAGCATGTCG,"Exon (Hnrnpk-220/Hnrnpk, exon 7 of 7)",13,58391142,58403343,12202,2,Hnrnpk-202,7403,Hnrnpk-202;Hnrnpk-224;Hnrnpk-221;Hnrnpk-232;Hnrnpk-216;Hnrnpk-201;Hnrnpk-205;Hnrnpk-217;Hnrnpk-206;Hnrnpk-209;Hnrnpk-213;Hnrnpk-227;Hnrnpk-234;Hnrnpk-233;Hnrnpk-228;Hnrnpk-214;Hnrnpk-215;Hnrnpk-211;Hnrnpk-208;Hnrnpk-212;Hnrnpk-231;Hnrnpk-230;Hnrnpk-203;Hnrnpk-218;Hnrnpk-226;Hnrnpk-207;Hnrnpk-219;Hnrnpk-225;Hnrnpk-229;Hnrnpk-223;Hnrnpk-220;Hnrnpk-210;Hnrnpk-204;Hnrnpk-222,Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk,0;0;0;0;0;0;0;-2023;-1106;-1916;-693;-1807;-2002;-1721;-1195;0;-171;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;6562;6115,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,19,15387,ENSMUSG00000021546,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2089,cg02360445,0.0000498,0.00000659,7.564717673,4.46E-13,gain,yes,-0.000036,0.0000112,-3.21728895,0.00143091,neg,ns,0.005667911,0.003278249,1.728944636,0.084814582,pos,ns,1.071529472,-0.000331121,0.000112739,-2.937064149,0.003561583,neg,ns,0.9496777,A930004D18Rik,A930004D18Rik_Promoter,2,18040235,18040284,18040283,18040284,50,-,AAGACCTTGCTATTTACTATAAATTAGGCACTCTTTAAGAGACCAGTGCG,Promoter (2-3kb),2,18025193,18037737,12545,2,A930004D18Rik-201,-2547,A930004D18Rik-201;Skida1-205;Skida1-202;Skida1-201,A930004D18Rik;Skida1;Skida1;Skida1,0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,10,77940,ENSMUSG00000054057,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21880,cg20311547,0.0000201,0.000009,2.229983619,0.026464325,gain,ns,0.0000492,0.0000153,3.216744138,0.001433541,pos,ns,0.006326903,0.004477649,1.412996767,0.158659911,pos,ns,0.799532794,-0.000029,0.000153986,-0.188267111,0.850790447,neg,ns,0.80236833,Pmfbp1,Pmfbp1_Promoter,8,109484482,109484531,109484482,109484483,50,-,CGGCTTCAGTCAATGTGGTCGATAGCTCCACTGAGAAACTCAACACGGCT,Promoter (9-10kb),8,109494027,109542640,48614,1,Pmfbp1-201,-9545,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,4,56523,ENSMUSG00000031727,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9898,cg27125915,0.00000823,0.00000571,1.442337314,0.150216787,gain,ns,-0.0000312,0.0000097,-3.216539566,0.00143453,neg,ns,-0.004695508,0.002840727,-1.652924821,0.099358508,neg,ns,1.002794937,0.000133392,0.0000977,1.365432723,0.173107053,pos,ns,0.888703897,Hnrnpa2b1,Hnrnpa2b1_Exon,6,51462469,51462518,51462469,51462470,50,-,CGTCAAGAGTTCTCTTGTACTAGACCTGTGTCCCTGAAGAGTACCTCGCT,"Exon (Hnrnpa2b1-211/Hnrnpa2b1, exon 1 of 2)",6,51460932,51469894,8963,2,Hnrnpa2b1-201,7376,Hnrnpa2b1-201;Hnrnpa2b1-207;Hnrnpa2b1-202;Hnrnpa2b1-209;Hnrnpa2b1-211;Hnrnpa2b1-204;Hnrnpa2b1-210;Hnrnpa2b1-203;Hnrnpa2b1-208;Hnrnpa2b1-205;Hnrnpa2b1-212;Hnrnpa2b1-206;Hnrnpa2b1-213;Nfe2l3-201,Hnrnpa2b1;Hnrnpa2b1;Hnrnpa2b1;Hnrnpa2b1;Hnrnpa2b1;Hnrnpa2b1;Hnrnpa2b1;Hnrnpa2b1;Hnrnpa2b1;Hnrnpa2b1;Hnrnpa2b1;Hnrnpa2b1;Hnrnpa2b1;Nfe2l3,0;0;0;0;0;0;0;0;1642;4183;3719;4149;0;29799,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,3,53379,ENSMUSG00000004980,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6196,cg26589497,0.0000314,0.00000779,4.026013444,0.0000714,gain,ns,-0.0000425,0.0000132,-3.215384857,0.001440124,neg,ns,0.003252215,0.003876246,0.839011605,0.402109308,pos,ns,0.395655874,-0.0000861,0.000133304,-0.646152738,0.518658488,neg,ns,0.182079478,Pura,Pura_Exon,18,36287918,36287967,36287918,36287919,50,-,CGCAACTCCATCACCGTGCCCTACAAGGTGTGGGCCAAGTTCGGACACAC,"Exon (Pura-201/Pura, exon 2 of 2)",18,36281097,36292535,11439,1,Pura-201,6821,Pura-201,Pura,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,13,19,19290,ENSMUSG00000043991,conserved gene and region,18,36286687,36288029,1343,*,1343,129,0.68652271,0.823041768,0.096053611,4.14E-95,CpGisland,TRUE,U4,Pr-F
8874,cg04833780,0.0000273,0.00000248,10.99749188,5.68E-24,gain,yes,-0.0000136,0.00000422,-3.215160612,0.001441213,neg,ns,0.00084782,0.00123669,0.685556066,0.493505432,pos,ns,0.306708063,0.0000121,0.0000425,0.285213446,0.775671078,pos,ns,0.951244447,Gbf1,Gbf1_Intron,19,46173638,46173687,46173686,46173687,50,-,TATATTATGTATTTTCTCTATCCCCAAAGAATCCGTTTTAATCTTTTCCG,"Intron (Gbf1-201/Gbf1, intron 3 of 39)",19,46152509,46286510,134002,1,Gbf1-201,21129,Gbf1-201;Gbf1-204;Gbf1-214;Gbf1-207;Gbf1-216,Gbf1;Gbf1;Gbf1;Gbf1;Gbf1,0;0;0;0;21058,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,18,107338,ENSMUSG00000025224,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10085,cg24239752,0.000220689,0.0000139,15.82890632,9.00E-42,gain,yes,-0.0000761,0.0000237,-3.214705531,0.001443425,neg,ns,0.026688286,0.006939142,3.84604955,0.000145712,pos,ns,3.836505379,-0.000468159,0.000238637,-1.961808307,0.050679352,neg,ns,0.294001486,Hoxa2,Hoxa2_fiveUTR,6,52164812,52164861,52164812,52164813,50,-,CGCGCTACTATTAAACTATTGAATTCATGGAGACAAGGTTGAAATTGGAC,Promoter (<=1kb),6,52162417,52164831,2415,2,Hoxa2-201,0,Gm28308-201;Hoxa2-201;Hoxa3-201,Gm28308;Hoxa2;Hoxa3,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,3,15399,ENSMUSG00000014704,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24122,cg25567652,0.0000177,0.00000895,1.979618677,0.048630657,gain,ns,0.0000489,0.0000152,3.214581976,0.001444026,pos,ns,0.00592852,0.004452323,1.331556652,0.183984194,pos,ns,0.735219485,-0.0000187,0.000153115,-0.122170857,0.902842865,neg,ns,0.595514093,Galnt2l,Galnt2l_Intron,8,122742717,122742766,122742717,122742718,50,-,CGGCACTAAGAAGATGCGGAAAATGATTGTGAGAAGATGGAATTGACATT,"Intron (Galnt2l-201/Galnt2l, intron 1 of 15)",8,119910841,124345722,4434882,1,Galnt2l-201,2831876,Galnt2l-201,Galnt2l,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,28,,NA,mapped to different genes,8,122742642,122742867,226,*,226,16,0.566371681,0.884756545,0.07079646,3.66E-10,CpGisland,TRUE,U13,Hc-P
19375,cg17074762,0.0000314,0.00000857,3.662917037,0.000293154,gain,ns,0.0000468,0.0000146,3.214381175,0.001445004,pos,ns,0.01381544,0.004265425,3.238936365,0.001329923,pos,ns,2.876173422,-0.000609356,0.000146688,-4.154108049,0.0000423,neg,ns,0.618005557,Efnb1,Efnb1_Intron,X,99139295,99139344,99139343,99139344,50,-,TCACTCTCTGCCTCTTTTTCTCAAGTCCTTTTGTTTCTCGCACATGCCCG,"Intron (Efnb1-201/Efnb1, intron 1 of 4)",20,99136130,99148991,12862,1,Efnb1-201,3165,Efnb1-201;Efnb1-202,Efnb1;Efnb1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,14,13641,ENSMUSG00000031217,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12136,cg27477138,0.0000195,0.00000464,4.194274352,0.0000358,gain,ns,-0.0000253,0.00000788,-3.213739924,0.001448129,neg,ns,0.003980602,0.002308753,1.724134916,0.085680391,pos,ns,1.06711856,-0.0000593,0.0000794,-0.746889599,0.455696294,neg,ns,0.915970666,Fbxl17,Fbxl17_Intron,17,63076341,63076390,63076389,63076390,50,+,TCTCCATCCAACTGCTTTTCACAAGGGTTTGGCATTTGAGAATTGCTACG,"Intron (Fbxl17-201/Fbxl17, intron 8 of 8)",17,63057452,63500017,442566,2,Fbxl17-201,423627,Fbxl17-201;Fbxl17-203;Fbxl17-204;Fbxl17-205,Fbxl17;Fbxl17;Fbxl17;Fbxl17,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,8,50758,ENSMUSG00000023965,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27508,cg09871685,0.0000286,0.0000178,1.60605445,0.109280064,gain,ns,0.0000972,0.0000302,3.21366424,0.001448498,pos,ns,0.018592037,0.008856872,2.099165096,0.036610784,pos,ns,1.436390971,0.000201426,0.000304587,0.661308573,0.508905645,pos,ns,0.723452297,Pbx1,Pbx1_Intergenic_upstream,1,168676936,168676985,168676984,168676985,50,+,GAGCTCTGGGAGAATCCAACTGTCAGAGCCGACAAGACAAATGAATCCCG,Distal Intergenic,1,168119364,168432270,312907,2,Pbx1-208,-244666,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,17,84,18514,ENSMUSG00000052534,conserved gene and region,1,168676888,168677048,161,*,161,10,0.527950311,0.897435897,0.062111801,0.00000521,CpGisland,TRUE,U15,NS
16180,cg21227575,0.0000178,0.00000243,7.338545039,1.91E-12,gain,yes,-0.0000133,0.00000413,-3.212173904,0.001455788,neg,ns,0.000302236,0.001209042,0.249979586,0.80276871,pos,ns,0.095409564,-0.00000634,0.0000416,-0.152569595,0.878836958,neg,ns,0.940599926,Zfp407,Zfp407_Exon,18,84560282,84560331,84560330,84560331,50,+,CTTGCTTCTATTTCTACCCGTCCTTTATGTTTCTTGGTGGCACAATGACG,"Exon (Zfp407-202/Zfp407, exon 2 of 9)",18,84207701,84589504,381804,2,Zfp407-202,29173,Zfp407-201;Zfp407-202;Zfp407-204;Zfp407-205,Zfp407;Zfp407;Zfp407;Zfp407,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,32,240476,ENSMUSG00000048410,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18116,cg06783533,0.0000506,0.0000115,4.401524802,0.0000148,gain,ns,-0.0000627,0.0000195,-3.211852126,0.001457366,neg,ns,0.004695728,0.005720285,0.820890534,0.412339428,pos,ns,0.384745136,-0.000363294,0.00019672,-1.846755344,0.065735538,neg,ns,0.78771496,Gnao1,Gnao1_threeUTR,8,93966950,93966999,93966998,93966999,50,+,TTGTCACATGACTTGTGCCACAGACACGAATAACATCCAGGTGGTGTTCG,3' UTR,8,93810838,93969388,158551,1,Gnao1-201,156112,Amfr-201;Gnao1-201;Gnao1-203;Gnao1-204;Gnao1-208;Gnao1-210;Gnao1-211;Gnao1-212,Amfr;Gnao1;Gnao1;Gnao1;Gnao1;Gnao1;Gnao1;Gnao1,45843;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,5,13,14681,ENSMUSG00000031748,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23240,cg21334666,0.0000203,0.00000383,5.311231232,0.000000208,gain,yes,-0.0000209,0.0000065,-3.211744546,0.001457894,neg,ns,-0.002196551,0.001904436,-1.153386663,0.249640216,neg,ns,0.602685451,0.00015255,0.0000655,2.329242713,0.020488471,pos,ns,0.894247107,Eri3,Eri3_Intron,4,117581819,117581868,117581819,117581820,50,+,CGATGTATGAGGCGTGCTGCACAGCCAGCGTTCTGCAAGCCTGTTTGCAC,"Intron (Eri3-201/Eri3, intron 3 of 8)",4,117550365,117674297,123933,1,Eri3-201,31454,Eri3-201;Eri3-205;Eri3-206;Eri3-202,Eri3;Eri3;Eri3;Eri3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,82,97,140546,ENSMUSG00000033423,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10763,cg20720451,0.00013906,0.0000114,12.18818076,3.50E-28,gain,yes,-0.0000622,0.0000194,-3.210075095,0.001466111,neg,ns,-0.002595104,0.005678582,-0.456998672,0.64799207,neg,ns,0.188430309,0.000122442,0.000195286,0.626990445,0.531126982,pos,ns,0.565802892,Nsd1,Nsd1_Exon,13,55213501,55213550,55213549,55213550,50,+,GATCAGAATCCTTTCAAGACCCTGAAAAAAGTGATTCAAGAGCTCAGACG,"Exon (Nsd1-207/Nsd1, exon 2 of 21)",13,55209782,55315755,105974,1,Nsd1-207,3719,Nsd1-207;Nsd1-201;Nsd1-203;Nsd1-204;Nsd1-206;Nsd1-209;Nsd1-211;Nsd1-205;Nsd1-208,Nsd1;Nsd1;Nsd1;Nsd1;Nsd1;Nsd1;Nsd1;Nsd1;Nsd1,0;0;0;0;0;0;0;0;1115,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,7,18193,ENSMUSG00000021488,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U4,Pr-F
18668,cg16235582,0.0000758,0.00000894,8.480101682,9.32E-16,gain,yes,-0.0000487,0.0000152,-3.209584376,0.001468534,neg,ns,0.00380044,0.004447186,0.854571848,0.393448143,pos,ns,0.405112501,0.0000963,0.000152938,0.62953043,0.529465527,pos,ns,0.221022697,Tenm4,Tenm4_Exon,7,96644135,96644184,96644183,96644184,50,+,CTCTGAGGAAGAGTTTGTCCCTAATTCATTCTTAGTTAAAAGTGGCTCCG,Promoter (<=1kb),7,96644172,96732280,88109,1,Tenm4-207,0,Tenm4-201;Tenm4-203;Tenm4-202;Tenm4-207,Tenm4;Tenm4;Tenm4;Tenm4,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,17,26,23966,ENSMUSG00000048078,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12677,cg08112186,0.00000488,0.00000244,2.003337151,0.046011233,gain,ns,-0.0000133,0.00000414,-3.208805194,0.00147239,neg,ns,-0.001441107,0.001212227,-1.188809148,0.235424632,neg,ns,0.628148101,0.0000345,0.0000417,0.828057864,0.408274757,pos,ns,0.955665101,Phf20l1,Phf20l1_Exon,15,66580109,66580158,66580157,66580158,50,+,AGTAAAAAGCCCCCAAATCGCCCTGGAATCACTTTTGAGATTGGTGCTCG,"Exon (Phf20l1-209/Phf20l1, exon 2 of 9)",15,66577560,66611616,34057,1,Phf20l1-209,2549,Phf20l1-209;Phf20l1-210;Phf20l1-205;Phf20l1-201;Phf20l1-211;Phf20l1-203;Phf20l1-206,Phf20l1;Phf20l1;Phf20l1;Phf20l1;Phf20l1;Phf20l1;Phf20l1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,239510,ENSMUSG00000072501,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14972,cg13325480,0.0000169,0.0000123,1.366755017,0.172692494,gain,ns,0.0000673,0.000021,3.208740957,0.001472708,pos,ns,0.014799323,0.006143897,2.408784488,0.016588829,pos,ns,1.780184264,-0.0000954,0.000211288,-0.451560063,0.651901695,neg,ns,0.709413717,Slc14a2,Slc14a2_Intron,18,78237877,78237926,78237925,78237926,50,-,TTTTCATGATTTTACAAAGTGCCTCCACCAGACACTCGCAGCTGGAGGCG,"Intron (Slc14a2-206/Slc14a2, intron 3 of 21)",18,78146148,78596942,450795,2,Slc14a2-206,359016,Slc14a2-206;Slc14a2-203,Slc14a2;Slc14a2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,12,27411,ENSMUSG00000024552,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26960,cg00556573,0.0000658,0.00000749,8.783816823,1.10E-16,gain,yes,-0.0000408,0.0000127,-3.207752556,0.001477614,neg,ns,-0.003766151,0.003730099,-1.009665018,0.313443226,neg,ns,0.503841112,-0.0000666,0.000128278,-0.519464212,0.60380775,neg,ns,0.186470894,Myh7b,Myh7b_Promoter,2,155611118,155611167,155611166,155611167,50,-,GGGAATTTGCCTTTTGTGTCCTGTGGCCAGGCTGGGGGGGCTGTGACACG,Promoter (<=1kb),2,155611212,155634307,23096,1,Myh7b-201,-94,Myh7b-201,Myh7b,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,6,668940,ENSMUSG00000074652,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12347,cg07206761,0.00000439,0.00000742,0.591830995,0.554395124,gain,ns,-0.0000404,0.0000126,-3.207733118,0.00147771,neg,ns,-0.009966558,0.003693323,-2.698533865,0.007346258,neg,ns,2.133933836,0.000340569,0.000127013,2.681369766,0.007724741,pos,ns,0.878355811,Fign,Fign_Intron,2,63981547,63981596,63981595,63981596,50,+,TAATCCAACTCTCATCTAAAGTGGTCCACGACAGTTTCAAATCTGCTTCG,"Intron (Fign-203/Fign, intron 2 of 2)",2,63971507,64098012,126506,2,Fign-203,116416,Fign-203;Fign-201;Fign-202;Fign-204,Fign;Fign;Fign;Fign,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,84,60344,ENSMUSG00000075324,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1769,cg12745837,-0.00000521,0.00000214,-2.429447775,0.015689667,loss,ns,0.0000117,0.00000364,3.207493039,0.001478904,pos,ns,0.001813268,0.001067393,1.698782989,0.090363377,pos,ns,1.044007546,0.0000496,0.0000367,1.352100381,0.177328792,pos,ns,0.047329641,Kctd1,Kctd1_Intron,18,15149413,15149462,15149461,15149462,50,-,ACTTGTATCTCTAGCTGCCAGCTTAGTTGATTGAAAACAGAAGGCAAACG,"Intron (Kctd1-201/Kctd1, intron 1 of 4)",18,14968685,15151446,182762,2,Kctd1-201,1984,Kctd1-201,Kctd1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,24,106931,ENSMUSG00000036225,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
16299,cg07905408,-0.0000247,0.00000526,-4.684055663,0.00000421,loss,ns,0.0000287,0.00000894,3.207202307,0.001480351,pos,ns,-0.000146272,0.00262002,-0.055828555,0.955514351,neg,ns,0.019762786,-0.0000566,0.0000901,-0.627957986,0.530493781,neg,ns,0.890576941,Mrm1,Mrm1_Intergenic_downstream,11,84723191,84723240,84723239,84723240,50,-,CAAAAAAGACAGATTCAGGCTGTATACCATCAATATAAAAGCATCCCCCG,Distal Intergenic,11,84814743,84815390,648,2,Mrm1-203,92199,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,37,42,217038,ENSMUSG00000018405,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21359,cg21814911,0.00000518,0.0000103,0.50187543,0.616111407,gain,ns,0.0000562,0.0000175,3.206187044,0.001485414,pos,ns,0.020395657,0.005138671,3.969053145,0.0000897,pos,ns,4.047095698,-0.000566325,0.000176718,-3.204672623,0.001492996,neg,ns,0.210230777,Apoo-ps,Apoo-ps_Intron,13,107470146,107470195,107470194,107470195,50,+,ACAATAAATCTCCTTGCTTTCATGAGTTTAAATCAGACTTTAAAACATCG,"Intron (AI197445-203/AI197445-203, intron 1 of 1)",13,107414144,107414729,586,2,Apoo-ps-201,-55417,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,5,621156,ENSMUSG00000049233,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
17343,cg09576428,-0.00003,0.00000598,-5.022488117,0.000000863,loss,yes,-0.0000326,0.0000102,-3.206148265,0.001485608,neg,ns,-0.003505415,0.002977657,-1.177239292,0.240003065,neg,ns,0.619783211,-0.000036,0.000102401,-0.351896567,0.725154918,neg,ns,0.825082725,Ube2q1,Ube2q1_threeUTR,3,89782399,89782448,89782399,89782400,50,+,CGTGATAGCTCTGCCTATTGCAGGACAATGATGGCTATTCTAAACGCTAA,3' UTR,3,89773616,89784000,10385,1,Ube2q1-201,8783,AC102392.1-201;Ube2q1-201;Ube2q1-203;Ube2q1-202,AC102392.1;Ube2q1;Ube2q1;Ube2q1,3862;0;8539;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,6,70093,ENSMUSG00000042572,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18207,cg02846173,-0.00000638,0.0000148,-0.430126529,0.667402456,loss,ns,0.0000807,0.0000252,3.206076542,0.001485966,pos,ns,0.018572082,0.00737865,2.517002681,0.012340044,pos,ns,1.908683286,-0.000316944,0.000253751,-1.249033217,0.212595255,neg,ns,0.456462998,Celf3,Celf3_fiveUTR,3,94479190,94479239,94479238,94479239,50,-,ACAGTTTGGTCGGATCTTTGAGCTGACTGTCATCAAGGACAAGTACACCG,Promoter (<=1kb),3,94478295,94485318,7024,1,Celf3-214,895,Celf3-214;Celf3-208;Celf3-204;Celf3-215;Celf3-201;Celf3-213;Celf3-212;Celf3-207;Celf3-206;Riiad1-202,Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Riiad1,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,12,78784,ENSMUSG00000028137,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
2416,cg08773740,-0.00000048,0.0000164,-0.029366611,0.976591099,loss,ns,0.0000891,0.0000278,3.205825121,0.001487223,pos,ns,0.00706094,0.008139521,0.867488407,0.386345461,pos,ns,0.413024186,0.0000428,0.000279917,0.152989086,0.878506415,pos,ns,0.694860973,Rorb,Rorb_Intergenic_upstream,19,19344257,19344306,19344305,19344306,50,-,TGCACAGTTGTTTGTTTTCACACTTTATGGGAATGAATCACACCATGTCG,Distal Intergenic,19,18930605,19111196,180592,2,Rorb-203,-233110,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,10,225998,ENSMUSG00000036192,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27153,cg10242074,0.00000339,0.0000192,0.176483243,0.860029551,gain,ns,0.000104581,0.0000326,3.205548841,0.001488605,pos,ns,-0.004212545,0.009558006,-0.440734728,0.659712239,neg,ns,0.180645459,0.000443193,0.000328699,1.348325884,0.178537885,pos,ns,0.808066286,Gm11445,Gm11445_Intergenic_downstream,2,159712844,159712893,159712892,159712893,50,-,TAAAAGTTGCACATAAATTTCCTCTTGTCATATTTTGGGCTTCACTAACG,Distal Intergenic,2,159777676,159778207,532,2,Gm11445-201,65363,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,100043689,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16284,cg21128541,0.000389991,0.0000334,11.68552194,2.19E-26,gain,yes,-0.000181746,0.0000567,-3.205515806,0.00148877,neg,ns,-0.039006734,0.016610522,-2.348314678,0.019486621,neg,ns,1.710263466,0.001647017,0.000571234,2.883258981,0.004211083,pos,ns,0.64427884,Nfix,Nfix_Exon,8,84716228,84716277,84716276,84716277,50,-,CTGGAGGCGGCGGCGGTAGCAAAAATGACCCCGGGACTTTGCCCTGGCCG,"Exon (Nfix-204/Nfix, exon 9 of 11)",8,84704712,84773396,68685,2,Nfix-204,57119,Nfix-204;Nfix-201;Nfix-202;Nfix-203;Nfix-206;Nfix-205,Nfix;Nfix;Nfix;Nfix;Nfix;Nfix,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,20,49,18032,ENSMUSG00000001911,conserved gene but different region,8,84716235,84716387,153,*,153,15,0.62745098,1,0.098039216,1.26E-11,CpGisland,TRUE,NA,NRS
9780,cg25628588,-0.00000264,0.0000042,-0.628554917,0.530103315,loss,ns,-0.0000229,0.00000714,-3.205102097,0.001490842,neg,ns,-0.00499784,0.002091544,-2.389545833,0.017466567,neg,ns,1.757792449,-0.000111871,0.0000719,-1.555314598,0.120891451,neg,ns,0.915712708,Trps1,Trps1_Exon,15,50846090,50846139,50846090,50846091,50,-,CGGTTGACCTTCTGGAAGTCTTTGGAATGGCTGAACTGCACCATGTTATG,"Exon (Trps1-202/Trps1, exon 2 of 6)",15,50654752,50889691,234940,2,Trps1-202,43552,Trps1-202;Trps1-206;Trps1-204;Trps1-205;Trps1-207;Trps1-201;Trps1-208,Trps1;Trps1;Trps1;Trps1;Trps1;Trps1;Trps1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,36,83925,ENSMUSG00000038679,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16638,cg19233240,0.0000473,0.00000748,6.329125893,8.63E-10,gain,yes,-0.0000407,0.0000127,-3.205041653,0.001491145,neg,ns,-0.014960494,0.003720578,-4.021012963,0.0000728,neg,ns,4.13765463,0.000305944,0.00012795,2.391115535,0.017393448,pos,ns,0.746541322,Bcas3,Bcas3_Intron,11,85737461,85737510,85737509,85737510,50,+,AAGGAAGAGCCTCTATAAATCACTGGAGATTAGAGACCCCGTTCTTGCCG,"Intron (Bcas3-205/Bcas3, intron 24 of 27)",11,85353167,85826058,472892,1,Bcas3-205,384294,Bcas3-205;Bcas3-206;Bcas3-201;Bcas3-202;Bcas3-216;Bcas3-212;Bcas3-203;Bcas3-207,Bcas3;Bcas3;Bcas3;Bcas3;Bcas3;Bcas3;Bcas3;Bcas3,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,24,192197,ENSMUSG00000059439,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2651,cg12178858,0.00000176,0.00000185,0.949013179,0.343353142,gain,ns,-0.0000101,0.00000315,-3.204677812,0.00149297,neg,ns,0.002561933,0.000921456,2.780307724,0.005762772,pos,ns,2.239368538,-0.0000678,0.0000317,-2.1396781,0.033161352,neg,ns,0.958948078,Dnmt1,Dnmt1_fiveUTR,9,20941526,20941575,20941526,20941527,50,+,CGTTCTCCAAGGACAAATCTTTATTTAAAAGGGATTTGACTTTAGCCAGG,5' UTR,9,20907209,20952623,45415,2,Dnmt1-203,11048,Dnmt1-203;Dnmt1-201;Dnmt1-202;Dnmt1-207;Dnmt1-205;Dnmt1-206,Dnmt1;Dnmt1;Dnmt1;Dnmt1;Dnmt1;Dnmt1,0;0;0;0;0;-4337,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,1,13433,ENSMUSG00000004099,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5498,cg00482994,-0.0000144,0.00000599,-2.412357896,0.016430154,loss,ns,-0.0000326,0.0000102,-3.203474518,0.00149902,neg,ns,-0.00352407,0.002981198,-1.182098432,0.238072579,neg,ns,0.623290624,-0.0000948,0.000102523,-0.924878619,0.355748435,neg,ns,0.901753456,Brd2,Brd2_threeUTR,17,34114462,34114511,34114462,34114463,50,+,CGGTTCTCCATCTTCCGCTGCAGAAGGAGGCAGCATCAGAAGCTGCACAG,3' UTR,17,34112023,34121747,9725,2,Brd2-203,7236,Brd2-203;Brd2-201;Brd2-207;Brd2-202;Brd2-216;Brd2-204;Brd2-205;Brd2-215;Brd2-209;Brd2-210;Brd2-214;Brd2-206;Brd2-208;Brd2-217;Brd2-219,Brd2;Brd2;Brd2;Brd2;Brd2;Brd2;Brd2;Brd2;Brd2;Brd2;Brd2;Brd2;Brd2;Brd2;Brd2,0;0;0;0;-609;-730;0;0;0;0;0;0;959;1925;2684,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,3,14312,ENSMUSG00000024335,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12334,cg23133455,-0.00000517,0.00000286,-1.811347545,0.071054805,loss,ns,0.0000155,0.00000485,3.2033408,0.001499694,pos,ns,0.00372276,0.001420983,2.61984864,0.009229822,pos,ns,2.034806664,-0.000138021,0.0000489,-2.824384841,0.00504406,neg,ns,0.938422333,Fign,Fign_Intergenic_downstream,2,63970500,63970549,63970500,63970501,50,-,CGGGAGCCTTCAGAAGTTTATCAAAAATGAAGAATTGCCTTGTGTAAATC,Distal Intergenic,2,63980447,64097988,117542,2,Fign-202,127488,Fign-203,Fign,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,28,84,60344,ENSMUSG00000075324,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2843,cg02500125,-0.00000404,0.00000771,-0.524143451,0.600553317,loss,ns,0.000042,0.0000131,3.203120136,0.001500806,pos,ns,0.005234855,0.00383734,1.364188366,0.173497861,pos,ns,0.760705876,0.000162961,0.000131966,1.234874064,0.217812526,pos,ns,0.709281147,Zfp503,Zfp503_Intergenic_downstream,14,21967685,21967734,21967685,21967686,50,+,CGGATGGATAATAATGTCATTTGCTTGATGCAGTAGATCTGTTTACGAGC,Distal Intergenic,14,21983959,21989601,5643,2,Zfp503-201,21867,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,27,218820,ENSMUSG00000039081,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3063,cg08881069,0.00000606,0.00000474,1.277987049,0.202210106,gain,ns,0.0000258,0.00000805,3.201515561,0.001508918,pos,ns,-0.000171221,0.00235922,-0.072575344,0.94219085,neg,ns,0.025861118,0.0000531,0.0000811,0.654843955,0.51305381,pos,ns,0.81092802,Lrmda,Lrmda_Intron,14,22495500,22495549,22495500,22495501,50,+,CGAGGGCTTTGATGGATGAGTTAGCTCCATCTGGTCGCAGTATATGTAAT,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,475788,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206;Lrmda-202,Lrmda;Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19908,cg00486031,0.0000075,0.00000278,2.69700966,0.007379178,gain,ns,-0.0000151,0.00000472,-3.200944614,0.001511814,neg,ns,-0.002097485,0.001383332,-1.51625578,0.130473707,neg,ns,0.884477,-0.00000896,0.0000476,-0.188337076,0.850735651,neg,ns,0.868744482,Ogt,Ogt_Exon,X,101652155,101652204,101652155,101652156,50,-,CGCAGTGACCTGGGGAACCTGCTCAAAGCCCTGGGTCGCTTGGAAGAAGC,"Exon (Ogt-202/Ogt, exon 5 of 23)",20,101640060,101682940,42881,1,Ogt-202,12095,Ogt-202;Ogt-206;Ogt-201;Ogt-205;Ogt-204;Ogt-207;Ogt-203,Ogt;Ogt;Ogt;Ogt;Ogt;Ogt;Ogt,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,32,33,108155,ENSMUSG00000034160,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3062,cg24217703,0.0000134,0.00000843,1.592187235,0.112361776,gain,ns,0.0000458,0.0000143,3.200093219,0.001516142,pos,ns,0.001636441,0.004194628,0.390127675,0.696710058,pos,ns,0.156947919,-0.0000465,0.000144253,-0.322383108,0.747379786,neg,ns,0.554125362,Lrmda,Lrmda_Intron,14,22495177,22495226,22495177,22495178,50,-,CGGGCCTATGAGGAACTGATGAATGAGGGAGCAAGTGTCAGAAACGCCCT,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,475465,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206;Lrmda-202,Lrmda;Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25770,cg18234517,-0.00000708,0.00000626,-1.130565266,0.259112042,loss,ns,0.000034,0.0000106,3.200073809,0.001516241,pos,ns,0.001630322,0.00311621,0.523174627,0.601226484,pos,ns,0.220961897,0.000107497,0.000107166,1.003088188,0.316600638,pos,ns,0.094528379,Uncx,Uncx_Exon,5,139537242,139537291,139537290,139537291,50,-,CTAGAAGCAGATAATAGTTAACGCTTTCTCTCTACCAGATCTGAACAACG,Promoter (6-7kb),5,139543494,139548179,4686,1,Uncx-201,-6252,NA,NA,NA,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,88,22255,ENSMUSG00000029546,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
19723,cg26760256,0.000065,0.000012,5.427879142,0.000000115,gain,yes,0.0000651,0.0000203,3.199625927,0.001518523,pos,ns,0.025278246,0.005957767,4.242906458,0.0000292,pos,ns,4.534998204,-0.000394605,0.000204887,-1.925964341,0.055023118,neg,ns,0.6967149,Trim45,Trim45_Exon,3,100923328,100923377,100923328,100923329,50,-,CGACAGGGAAGTAGAGAAGAGGTGTCAGACCTGCAAAGCCAACCTCTGCC,"Exon (Trim45-202/Trim45, exon 2 of 7)",3,100922202,100931702,9501,1,Trim45-202,1126,Trim45-202;Trim45-201;Trim45-203;Trim45-204,Trim45;Trim45;Trim45;Trim45,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,229644,ENSMUSG00000033233,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14650,cg08768357,0.0000143,0.00000765,1.874603583,0.061787462,gain,ns,-0.0000416,0.000013,-3.197873963,0.001527478,neg,ns,0.011318025,0.003807518,2.972547034,0.003184821,pos,ns,2.496915006,-0.000436032,0.00013094,-3.330009351,0.000973274,neg,ns,0.787987123,Rbfox2,Rbfox2_Intron,15,77091678,77091727,77091726,77091727,50,+,CGCTCACAAGTCTTGATTGTCCAAAAAAGCCTCTGTTCCCATCTCTAACG,"Intron (1700109K24Rik-201/1700109K24Rik-201, intron 2 of 2)",15,77078990,77306928,227939,2,Rbfox2-204,215201,Rbfox2-204;Rbfox2-203;Rbfox2-202;Rbfox2-206;Rbfox2-208;Rbfox2-209;Rbfox2-201;Rbfox2-215;Rbfox2-207,Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,20,93686,ENSMUSG00000033565,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7333,cg11848487,0.0000143,0.0000185,0.77034035,0.441684686,gain,ns,0.000100764,0.0000315,3.197524899,0.001529268,pos,ns,0.016712649,0.009232277,1.810241266,0.071226552,pos,ns,1.147358081,-0.000403863,0.000317497,-1.272020018,0.20431938,neg,ns,0.431943359,Ptchd4,Ptchd4_Exon,17,42317046,42317095,42317046,42317047,50,+,CGAGCCGTGCTGGAAATGAAGGTGAACCACAAGGGCTATAATTATACTTT,"Exon (Ptchd4-201/Ptchd4, exon 2 of 4)",17,42315947,42505077,189131,1,Ptchd4-201,1099,Ptchd4-201;Ptchd4-203;Ptchd4-202,Ptchd4;Ptchd4;Ptchd4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,9,627626,ENSMUSG00000042256,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6824,cg15177520,0.00000276,0.00000488,0.567065288,0.571080201,gain,ns,-0.0000265,0.00000828,-3.197143703,0.001531226,neg,ns,0.00060815,0.002426748,0.250602881,0.802287165,pos,ns,0.095670156,0.000054,0.0000835,0.646893548,0.518179528,pos,ns,0.93029917,Psmb7,Psmb7_Intron,2,38609548,38609597,38609596,38609597,50,-,ACTTTCATTAAGCTTGTTTAATTAGATTCCAGATGCTAATTTGCAAGTCG,"Intron (Psmb7-201/Psmb7, intron 6 of 7)",2,38588036,38644087,56052,2,Psmb7-201,34490,Psmb7-201;Psmb7-202,Psmb7;Psmb7,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,9,19177,ENSMUSG00000026750,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6743,cg15070011,-0.0000309,0.00000833,-3.714139026,0.000241758,loss,ns,0.0000452,0.0000142,3.196508284,0.001534493,pos,ns,0.000106561,0.004146984,0.025695914,0.979516416,pos,ns,0.008988281,0.000233719,0.000142614,1.638815218,0.102266205,pos,ns,0.479550692,Lgi1,Lgi1_Exon,19,38265026,38265075,38265074,38265075,50,+,TACCAAAGATAATGCTTTATGTGAGAATGCCAGATCCATTCCACGCACCG,Promoter (<=1kb),19,38264536,38312214,47679,1,Lgi1-207,490,Lgi1-207;Lgi1-201;Lgi1-209;Lgi1-206;Lgi1-205;Lgi1-204;Lgi1-208;Lgi1-203;Lgi1-202,Lgi1;Lgi1;Lgi1;Lgi1;Lgi1;Lgi1;Lgi1;Lgi1;Lgi1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,7,56839,ENSMUSG00000067242,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21762,cg05543909,-0.00000546,0.00000115,-4.724803714,0.0000035,loss,ns,0.00000627,0.00000196,3.196026299,0.001536976,pos,ns,0.000296005,0.000574744,0.515021665,0.60690491,pos,ns,0.216879349,0.00000279,0.0000198,0.14095116,0.888000072,pos,ns,0.975708557,Zfhx3,Zfhx3_threeUTR,8,108957273,108957322,108957273,108957274,50,+,CGTGGGTTGTTTTCCCATATACCTATCTATGCCGGTGATTTTACATTCTT,3' UTR,8,107942644,108961630,1018987,1,Zfhx3-204,1014629,Zfhx3-204;Zfhx3-201,Zfhx3;Zfhx3,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5182,cg26033442,0.00000288,0.00000614,0.469629711,0.638949755,gain,ns,0.0000333,0.0000104,3.195851833,0.001537876,pos,ns,0.003166963,0.003053806,1.037054298,0.300518796,pos,ns,0.522128359,0.0000269,0.00010502,0.256469793,0.797758221,pos,ns,0.769982426,Prrxl1,Prrxl1_Intron,14,32605500,32605549,32605548,32605549,50,-,CGGTCATTCATAATTAACTAGTGATAATGTTCTACACTAATTTGTCCGCG,"Intron (Prrxl1-203/Prrxl1, intron 4 of 7)",14,32599407,32649204,49798,1,Prrxl1-203,6093,Prrxl1-203;Prrxl1-204;Prrxl1-202;Prrxl1-201;Prrxl1-205,Prrxl1;Prrxl1;Prrxl1;Prrxl1;Prrxl1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,23,107751,ENSMUSG00000041730,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1990,cg05611223,0.0000043,0.00000377,1.140524482,0.254948223,gain,ns,0.0000205,0.00000641,3.194742699,0.001543606,pos,ns,0.004804572,0.001877392,2.559172935,0.010966644,pos,ns,1.959926251,-0.000105298,0.0000646,-1.630925972,0.103921438,neg,ns,0.925262978,Foxb2,Foxb2_Promoter,19,16880120,16880169,16880120,16880121,50,-,CGTGCACCAAGGCGAAACAGACCATTTAAATCAATTAGGACTGCTCTGAT,Promoter (6-7kb),19,16872319,16873805,1487,2,Foxb2-201,-6364,NA,NA,NA,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,3,3,14240,ENSMUSG00000056829,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
2018,cg14311946,0.0000134,0.00000724,1.856213131,0.064371893,gain,ns,-0.0000393,0.0000123,-3.192308023,0.001556255,neg,ns,-0.009786832,0.003603149,-2.716188932,0.006974468,neg,ns,2.156488911,0.000156338,0.000123912,1.261685534,0.208010469,pos,ns,0.842862647,Ppp3r1,Ppp3r1_threeUTR,11,17198322,17198371,17198370,17198371,50,-,CACCCAACACTTTTGCTTTCTTCTCCATCTCTGAAGATCTGCTCAAGACG,3' UTR,11,17159263,17200375,41113,1,Ppp3r1-201,39059,Pno1-201;Ppp3r1-201;Ppp3r1-202;Wdr92-202,Pno1;Ppp3r1;Ppp3r1;Wdr92,13197;0;5478;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,2,19058,ENSMUSG00000033953,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5782,cg20051624,-0.00000771,0.00000527,-1.462253955,0.14468464,loss,ns,0.0000286,0.00000896,3.192001848,0.001557853,pos,ns,0.012447436,0.002624392,4.742978274,0.00000322,pos,ns,5.492480424,-0.000369533,0.0000903,-4.094430968,0.000054,neg,ns,0.862355058,Gapvd1,Gapvd1_Exon,2,34717294,34717343,34717294,34717295,50,-,CGCAAGGTTTTATCAGGTTTACCATGGAGTTTGTTTTCATCAACAGGGAC,Promoter (<=1kb),2,34676184,34717297,41114,2,Gapvd1-206,0,Gapvd1-202;Gapvd1-206;Gapvd1-201;Gapvd1-203;Gapvd1-208;Gapvd1-205;Gapvd1-211;Gapvd1-212,Gapvd1;Gapvd1;Gapvd1;Gapvd1;Gapvd1;Gapvd1;Gapvd1;Gapvd1,0;0;0;0;0;0;0;-4565,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,66691,ENSMUSG00000026867,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1827,cg12836107,0.000178739,0.000014,12.7635199,2.85E-30,gain,yes,-0.0000759,0.0000238,-3.191332978,0.001561348,neg,ns,0.016683569,0.00696988,2.393666442,0.0172752,pos,ns,1.762576924,-0.0000247,0.000239694,-0.103148914,0.917911479,neg,ns,0.763590659,Foxp2,Foxp2_threeUTR,6,15413810,15413859,15413810,15413811,50,-,CGTCATAATCTTAGCCTGCACAAGTGTTTTGTTCGAGTAGAAAATGTTAA,3' UTR,6,14901349,15441977,540629,1,Foxp2-207,512461,Foxp2-207;Foxp2-213;Foxp2-205;Foxp2-204;Foxp2-201;Foxp2-206,Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,10,65,114142,ENSMUSG00000029563,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18328,cg07398354,0.0000433,0.00000418,10.36271364,8.40E-22,gain,yes,-0.0000227,0.00000711,-3.191126016,0.001562431,neg,ns,-0.002365464,0.002081921,-1.136192642,0.256753528,neg,ns,0.590483579,-0.0000393,0.0000716,-0.548332744,0.583858098,neg,ns,0.905041093,Plxnc1,Plxnc1_Exon,10,94793217,94793266,94793265,94793266,50,+,AATAAGACTTTTACATGCAAGAGTTGTTTCTGAGCTTCTTCCAGCCCTCG,"Exon (Plxnc1-201/Plxnc1, exon 31 of 31)",10,94790866,94944835,153970,2,Plxnc1-201,151569,Cep83-201;Cep83-202;Plxnc1-201,Cep83;Cep83;Plxnc1,104563;53133;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,5,54712,ENSMUSG00000074785,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25644,cg00111333,0.0000231,0.00000679,3.400100712,0.000761788,gain,ns,0.0000368,0.0000115,3.190683965,0.001564746,pos,ns,0.007040121,0.003378453,2.083829723,0.037994396,pos,ns,1.42028045,0.0000116,0.000116185,0.099464633,0.920833657,pos,ns,0.83816771,Ptprc,Ptprc_Exon,1,137966477,137966526,137966477,137966478,50,-,CGCTGTCGGTGAGTTTGGAATTAAAATCAAAACCATCGACCGTTGATTGT,"Exon (Mir181a-1-201/Mir181a-1-201, exon 1 of 1)",1,138112030,138115474,3445,2,Ptprc-211,148997,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,19264,ENSMUSG00000026395,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23498,cg21218248,-0.00000508,0.00000172,-2.957853324,0.003336178,loss,ns,0.00000931,0.00000292,3.189582571,0.001570529,pos,ns,0.001439946,0.000854794,1.684554094,0.093081091,pos,ns,1.031138535,-0.0000388,0.0000294,-1.318922699,0.188168406,neg,ns,0.960502945,Cacna1c,Cacna1c_Exon,6,118686228,118686277,118686228,118686229,50,-,CGGTCAGGATCTGAATGACACATTCCCACCAATAAGGGACACAGCGTTAG,"Exon (Cacna1c-207/Cacna1c, exon 15 of 47)",6,118587240,119196231,608992,2,Cacna1c-207,509954,Cacna1c-207;Cacna1c-205;Cacna1c-215;Cacna1c-224;Cacna1c-225;Cacna1c-226;Cacna1c-227;Cacna1c-202;Cacna1c-201;Cacna1c-203;Cacna1c-212;Cacna1c-216;Cacna1c-210;Cacna1c-206;Cacna1c-208;Cacna1c-213;Cacna1c-217;Cacna1c-219;Cacna1c-220;Cacna1c-209;Cacna1c-204;Cacna1c-214;Cacna1c-222,Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,13,15,12288,ENSMUSG00000051331,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7256,cg19625359,-0.000076,0.0000111,-6.868326768,3.56E-11,loss,yes,0.00006,0.0000188,3.189570837,0.00157059,pos,ns,0.002904488,0.005506881,0.527428836,0.598273087,pos,ns,0.223100533,-0.000239207,0.000189381,-1.263098165,0.207503083,neg,ns,0.329789322,Gm5267,Gm5267_Intron,1,41812234,41812283,41812234,41812235,50,+,CGTGAATGCTGGTGTTCTGGCAGGAAGCAAGCCCTGCATTAATAAAATGT,"Intron (Gm29260-201/Gm29260-201, intron 1 of 5)",1,42103289,42104333,1045,1,Gm5267-201,-291006,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,15,383634,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21311,cg22275760,0.0000164,0.00000737,2.230247594,0.026446611,gain,ns,-0.0000399,0.0000125,-3.189509276,0.001570914,neg,ns,0.01371038,0.003666134,3.739737853,0.000219378,pos,ns,3.658806434,-0.000422457,0.000126078,-3.350760773,0.000905564,neg,ns,0.685815621,Rbm15,Rbm15_Intergenic_downstream,3,107325261,107325310,107325309,107325310,50,-,CCAAGGCATGTGGAACCAAAGGTCAAATAAGGCACAGATACCAAGTAACG,Distal Intergenic,3,107327135,107333101,5967,2,Rbm15-202,7840,Rbm15-201;Rbm15-202,Rbm15;Rbm15,0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,9,229700,ENSMUSG00000048109,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25597,cg16474417,0.0000772,0.00000891,8.666453635,2.52E-16,gain,yes,0.0000482,0.0000151,3.18846948,0.001576393,pos,ns,0.016732681,0.00443265,3.774871206,0.000191828,pos,ns,3.717087452,-0.000340301,0.000152438,-2.232380616,0.026303856,neg,ns,0.639771972,Ebf3,Ebf3_Intron,7,137302935,137302984,137302935,137302936,50,+,CGGTGCTGTTTGTAAGGCTTGGTAATAATCATACATAATCGTTTGGAAAT,"Intron (Ebf3-204/Ebf3, intron 6 of 15)",7,137193673,137314445,120773,2,Ebf3-204,11461,Ebf3-204;Ebf3-201;Ebf3-202;Ebf3-203;Ebf3-208;Ebf3-206,Ebf3;Ebf3;Ebf3;Ebf3;Ebf3;Ebf3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,62,84,13593,ENSMUSG00000010476,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
1321,cg04004289,0.0000633,0.00000598,10.58629454,1.47E-22,gain,yes,-0.0000324,0.0000102,-3.18817941,0.001577924,neg,ns,0.003619691,0.002974603,1.216865419,0.22458103,pos,ns,0.648626931,-0.0000222,0.000102296,-0.217305049,0.828113575,neg,ns,0.111824109,Fezf2,Fezf2_fiveUTR,14,12345697,12345746,12345745,12345746,50,-,TTCAGCTGACATCACATGAAGTCACTTGAAGTGGAATGACATGGGCGGCG,Promoter (<=1kb),14,12342094,12345844,3751,2,Fezf2-203,98,Fezf2-203;Fezf2-201;Fezf2-202,Fezf2;Fezf2;Fezf2,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,13,45,54713,ENSMUSG00000021743,conserved gene and region,14,12345742,12345947,206,*,206,23,0.679611651,1.001479603,0.111650485,5.22E-19,CpGisland,TRUE,U13,Hc-P
17091,cg06354898,0.0000227,0.00000369,6.152292881,2.36E-09,gain,yes,-0.00002,0.00000626,-3.187363823,0.001582238,neg,ns,-0.003079829,0.001834432,-1.678900273,0.094179106,neg,ns,1.026045439,0.0000322,0.0000631,0.509984608,0.610425139,pos,ns,0.914464769,Msi2,Msi2_Intron,11,88348996,88349045,88349044,88349045,50,+,GTGTGCAGAGAATAGAGCTGGGTATGAGGCCAGAAGCCAGGCATGCACCG,"Intron (Msi2-203/Msi2, intron 11 of 13)",11,88339382,88718229,378848,2,Msi2-203,369184,Msi2-203;Msi2-201,Msi2;Msi2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,21,36,76626,ENSMUSG00000069769,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19601,cg22310572,0.0000254,0.00000485,5.248442817,0.000000285,gain,yes,-0.0000262,0.00000823,-3.186991281,0.001584212,neg,ns,-0.007623222,0.002412575,-3.159787045,0.001734667,neg,ns,2.760783886,0.000268645,0.000083,3.237921544,0.001334506,pos,ns,0.896891656,Hnrnpdl,Hnrnpdl_threeUTR,5,100035597,100035646,100035645,100035646,50,+,ATCTTTACGCTGGTACATGAAGTTGGAAGAGACCATACCACAGGACAGCG,Promoter (<=1kb),5,100033577,100036068,2492,2,Hnrnpdl-203,422,Enoph1-202;Enoph1-201;Enoph1-203;Hnrnpdl-203;Hnrnpdl-202;Hnrnpdl-207;Hnrnpdl-201;Hnrnpdl-204;Hnrnpdl-205;Hnrnpdl-206,Enoph1;Enoph1;Enoph1;Hnrnpdl;Hnrnpdl;Hnrnpdl;Hnrnpdl;Hnrnpdl;Hnrnpdl;Hnrnpdl,0;0;0;0;0;0;0;0;0;1477,TRUE,FALSE,TRUE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,8,8,50926,ENSMUSG00000029328,conserved gene and region,5,100035645,100035745,101,*,101,9,0.613861386,0.945889698,0.089108911,0.000001,CpGisland,TRUE,U12,Tr-I
10713,cg02860623,0.000155269,0.0000163,9.510099932,5.52E-19,gain,yes,-0.0000884,0.0000277,-3.18687922,0.001584806,neg,ns,-0.009523958,0.00812597,-1.172039525,0.242081132,neg,ns,0.616039059,-0.00062612,0.000279451,-2.240534188,0.025764319,neg,ns,0.393196596,Anxa6,Anxa6_Exon,11,54998542,54998591,54998542,54998543,50,+,CGGGCCACTGCACTAAGTTCCCACATCTGATAGGCCACCTGCGCTGCCTC,"Exon (Anxa6-201/Anxa6, exon 14 of 25)",11,54979108,55033445,54338,2,Anxa6-201,34854,Anxa6-201;Anxa6-202;Anxa6-203,Anxa6;Anxa6;Anxa6,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,11749,ENSMUSG00000018340,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12821,cg23018667,-0.00000741,0.0000192,-0.386359126,0.699495763,loss,ns,0.000103764,0.0000326,3.18545001,0.001592402,pos,ns,0.004671814,0.009543165,0.489545547,0.62480174,pos,ns,0.204257769,-0.0000963,0.000328189,-0.293395208,0.769416403,neg,ns,0.314665733,Tmem33,Tmem33_Intergenic_upstream,5,67231832,67231881,67231880,67231881,50,+,TTACATTGCCTACATTTTCAGTTGATGCTCCGGTAATTTCGGATAGGCCG,Distal Intergenic,5,67260565,67291461,30897,1,Tmem33-201,-28684,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,22,22,67878,ENSMUSG00000037720,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
14570,cg01371095,0.0000468,0.00000952,4.917063735,0.00000143,gain,yes,0.0000515,0.0000162,3.185445745,0.001592425,pos,ns,0.018261417,0.004736627,3.855363496,0.000140519,pos,ns,3.852264497,-0.000307943,0.000162892,-1.890470676,0.059627541,neg,ns,0.306875645,Scrt1,Scrt1_threeUTR,15,76516517,76516566,76516517,76516518,50,+,CGTTCCTTCTACCTGAATTCGCTAAGTCGGTTATTGTGCTGCTTAGTTAT,3' UTR,15,76516203,76522499,6297,2,Scrt1-201,5933,Dgat1-201;Dgat1-210;Dgat1-212;Dgat1-211;Dgat1-209;Scrt1-201;Scrt1-202,Dgat1;Dgat1;Dgat1;Dgat1;Dgat1;Scrt1;Scrt1,-4566;-4837;-4843;-4564;-4691;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,6,170729,ENSMUSG00000048385,conserved gene and region,15,76516517,76516632,116,*,116,9,0.612068966,0.892307692,0.077586207,0.00000318,CpGisland,TRUE,U13,Hc-P
22351,cg18201277,0.0000905,0.0000152,5.944377694,7.47E-09,gain,yes,-0.0000824,0.0000259,-3.185346548,0.001592953,neg,ns,0.005940244,0.007579095,0.783766897,0.43377532,pos,ns,0.362735161,-0.000455752,0.000260644,-1.748557547,0.081357359,neg,ns,0.668994382,Btbd10,Btbd10_Intron,7,113347335,113347384,113347383,113347384,50,+,CCCTCTACATATTAATTCAGTTTATTTTCTCACAGACACTGACTCAGCCG,"Intron (Btbd10-201/Btbd10, intron 4 of 10)",7,113315626,113369339,53714,2,Btbd10-201,21955,Btbd10-202;Btbd10-201;Btbd10-203;Btbd10-205,Btbd10;Btbd10;Btbd10;Btbd10,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,6,68815,ENSMUSG00000038187,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17048,cg10271516,-0.0000164,0.0000162,-1.0100745,0.313247332,loss,ns,0.0000877,0.0000275,3.184413791,0.001597931,pos,ns,0.007227948,0.008064452,0.896272644,0.37080262,pos,ns,0.430857205,0.000449429,0.000277336,1.620520915,0.106137141,pos,ns,0.258374662,Il1rapl1,Il1rapl1_fiveUTR,X,88115038,88115087,88115086,88115087,50,+,TCGGTAAGGTAATTGCTGGTCATCACAATGCGTATTCAGAAAAATCCACG,Promoter (<=1kb),20,86740870,88115645,1374776,2,Il1rapl1-203,558,Il1rapl1-203;Il1rapl1-202,Il1rapl1;Il1rapl1,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,18,331461,ENSMUSG00000052372,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2859,cg01658750,-0.000035,0.0000234,-1.492100791,0.136689665,loss,ns,0.000126801,0.0000398,3.184353612,0.001598253,pos,ns,0.009555542,0.011665908,0.819099713,0.413358774,pos,ns,0.38367284,0.0000118,0.00040119,0.029301101,0.976643303,pos,ns,0.339256264,Sgk1,Sgk1_Intron,10,21991668,21991717,21991716,21991717,50,+,ACCTTCCTGTTCGGAAGTCTTAGTAGGTTGCTGGGACAGAACAGGGGGCG,"Intron (Sgk1-204/Sgk1, intron 3 of 13)",10,21882184,21999893,117710,1,Sgk1-204,109484,Sgk1-204;Sgk1-205;Sgk1-210;Sgk1-213;Sgk1-212;Sgk1-203;Sgk1-202;Sgk1-201;Sgk1-209;Sgk1-207;Sgk1-206;Sgk1-208,Sgk1;Sgk1;Sgk1;Sgk1;Sgk1;Sgk1;Sgk1;Sgk1;Sgk1;Sgk1;Sgk1;Sgk1,0;63198;0;0;-506;0;0;0;-2966;0;0;-4874,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,3,20393,ENSMUSG00000019970,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11894,cg26523262,0.0000261,0.0000115,2.276496286,0.023497826,gain,ns,-0.0000621,0.0000195,-3.183950845,0.001600407,neg,ns,-0.011056284,0.005714263,-1.934857338,0.053917319,neg,ns,1.268271707,0.000000202,0.000196513,0.001025733,0.999182244,pos,ns,0.098113138,Csnk1a1,Csnk1a1_Exon,18,61557011,61557060,61557059,61557060,50,+,TGTTGTGTTTTTGTTCCAACATGTCTTCCTCCTCCGCTTAGAAAATGGCG,"Exon (Csnk1a1-205/Csnk1a1, exon 2 of 2)",18,61555274,61590061,34788,1,Csnk1a1-204,1737,Csnk1a1-204;Csnk1a1-206;Csnk1a1-201;Csnk1a1-207;Csnk1a1-202;Csnk1a1-205;Csnk1a1-210;Csnk1a1-208,Csnk1a1;Csnk1a1;Csnk1a1;Csnk1a1;Csnk1a1;Csnk1a1;Csnk1a1;Csnk1a1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,9,93687,ENSMUSG00000024576,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
21404,cg00021588,0.0000085,0.00000157,5.412652459,0.000000125,gain,yes,-0.00000849,0.00000267,-3.183888573,0.00160074,neg,ns,0.000409317,0.00078141,0.523818338,0.600779177,pos,ns,0.221285129,-0.00000935,0.0000269,-0.34808341,0.72801379,neg,ns,0.951281133,Ahcyl1,Ahcyl1_Exon,3,107671174,107671223,107671174,107671175,50,+,CGGATCTTCTTAAACACGTTTGGATACTTCTTATAAACCCAGTGGGTTAA,"Exon (Ahcyl1-201/Ahcyl1, exon 7 of 17)",3,107663118,107677767,14650,2,Ahcyl1-203,6544,Ahcyl1-203;Ahcyl1-201;Ahcyl1-205;Ahcyl1-202;Ahcyl1-206;Ahcyl1-208;Ahcyl1-204,Ahcyl1;Ahcyl1;Ahcyl1;Ahcyl1;Ahcyl1;Ahcyl1;Ahcyl1,0;0;-600;-3691;-1665;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,4,229709,ENSMUSG00000027893,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20574,cg09916017,-0.00000816,0.00000323,-2.529401468,0.011921159,loss,ns,-0.0000174,0.00000548,-3.1838292,0.001601058,neg,ns,-0.000820034,0.001605612,-0.510729795,0.609903779,neg,ns,0.214738675,-0.0000468,0.0000552,-0.847847781,0.397176886,neg,ns,0.897987843,Hipk1,Hipk1_Intron,3,103752013,103752062,103752061,103752062,50,+,CAAGAAATAACATTCCAATGTGAGGCAGAAATCTGGCGTTCCAAGCGACG,"Intron (Hipk1-203/Hipk1, intron 10 of 15)",3,103739815,103791563,51749,2,Hipk1-203,39501,Hipk1-203;Hipk1-202;Hipk1-201;Hipk1-206;Hipk1-207;Hipk1-204;Hipk1-205,Hipk1;Hipk1;Hipk1;Hipk1;Hipk1;Hipk1;Hipk1,0;0;0;0;-948;-999;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,11,15257,ENSMUSG00000008730,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10237,cg08608749,0.0000555,0.00000511,10.85415796,1.78E-23,gain,yes,-0.0000276,0.00000868,-3.182497679,0.001608201,neg,ns,0.004309366,0.002544331,1.69371282,0.091324326,pos,ns,1.039413525,-0.0000271,0.0000875,-0.309941903,0.756813387,neg,ns,0.180893726,Hoxa13,Hoxa13_Exon,6,52259898,52259947,52259898,52259899,50,+,CGCCTGCTCTTTGGGGCAGTACATTTGGCCGTTCCAGCCGTTGGGCAGCG,Promoter (<=1kb),6,52257694,52260803,3110,2,Hoxa13-203,856,Hoxa13-203;Hoxa13-201;Hoxa13-202;Hoxa13-204;Hoxa13-205;Hoxa13-206,Hoxa13;Hoxa13;Hoxa13;Hoxa13;Hoxa13;Hoxa13,0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,12,15398,ENSMUSG00000038203,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
706,cg13475786,-0.000015,0.0000143,-1.043711093,0.297432282,loss,ns,0.0000776,0.0000244,3.181993547,0.001610913,pos,ns,0.00621656,0.007140191,0.870643313,0.384622636,pos,ns,0.41496516,0.000391106,0.000245551,1.592772078,0.11223043,pos,ns,0.724708257,Porcn,Porcn_Exon,X,8203035,8203084,8203035,8203036,50,-,CGTTTCTTGCTGTAGTAACAGAAGACAGAAAGAAGCATTAAGAGACAGGC,"Exon (Porcn-202/Porcn, exon 7 of 14)",20,8193848,8206525,12678,2,Porcn-202,3441,Porcn-202;Porcn-207;Porcn-201;Porcn-203;Porcn-204;Porcn-205;Porcn-206,Porcn;Porcn;Porcn;Porcn;Porcn;Porcn;Porcn,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,4,53627,ENSMUSG00000031169,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22027,cg05160580,-0.0000152,0.00000901,-1.687335232,0.092544774,loss,ns,0.0000487,0.0000153,3.181507356,0.001613533,pos,ns,0.003352418,0.004485591,0.747374908,0.455403802,pos,ns,0.341603347,-0.000215903,0.000154259,-1.399614809,0.162628577,neg,ns,0.761115087,Elavl4,Elavl4_Exon,4,110206499,110206548,110206499,110206500,50,+,CGTTGTTCACTGCTCCAAAGGGGCCAAAGAGCTGCCAGAGGACACTCTCA,"Exon (Elavl4-204/Elavl4, exon 7 of 7)",4,110203722,110287527,83806,2,Elavl4-204,80979,Elavl4-204;Elavl4-201;Elavl4-203;Elavl4-202;Elavl4-205;Elavl4-206;Elavl4-207;Elavl4-211,Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,36,15572,ENSMUSG00000028546,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1670,cg20078404,0.00000136,0.00000317,0.430480257,0.667145455,gain,ns,-0.0000171,0.00000538,-3.181440222,0.001613895,neg,ns,-0.002007133,0.001577318,-1.272497167,0.204150125,neg,ns,0.690050351,0.0000725,0.0000542,1.33628582,0.182435889,pos,ns,0.906744367,Arid4b,Arid4b_Exon,13,14170079,14170128,14170079,14170080,50,-,CGAGGGAAAAATCAAAAAATGTATGAAGCTAGTATTAAAGATTCTGATGT,"Exon (Arid4b-203/Arid4b, exon 17 of 24)",13,14063785,14199367,135583,1,Arid4b-204,106294,Arid4b-205;Arid4b-204;Arid4b-203;Arid4b-201;Arid4b-202;Arid4b-207,Arid4b;Arid4b;Arid4b;Arid4b;Arid4b;Arid4b,106295;0;0;0;106280;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,Exon,3,3,94246,ENSMUSG00000039219,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24919,cg11362390,-0.00000243,0.00000306,-0.795278512,0.427059995,loss,ns,-0.0000165,0.00000519,-3.181300752,0.001614647,neg,ns,-0.000919777,0.001521793,-0.604403466,0.54601752,neg,ns,0.262793422,-0.000129326,0.0000523,-2.471148021,0.014005297,neg,ns,0.916437484,Kpna6,Kpna6_Exon,4,129653863,129653912,129653863,129653864,50,-,CGGCAGACTCCGGAGTCTATGACTGCCTGGATCTTCTCATTGGGGCCATC,"Exon (Kpna6-202/Kpna6, exon 9 of 14)",4,129643980,129672767,28788,2,Kpna6-202,18855,Kpna6-202;Kpna6-201;Kpna6-204;Kpna6-205;Kpna6-203,Kpna6;Kpna6;Kpna6;Kpna6;Kpna6,0;0;0;2814;18616,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,16650,ENSMUSG00000003731,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5948,cg16328394,0.0000233,0.00000658,3.531934634,0.000475223,gain,ns,-0.0000356,0.0000112,-3.180972338,0.00161642,neg,ns,-0.000942577,0.003276819,-0.287649985,0.773806879,neg,ns,0.111367414,-0.0000339,0.00011269,-0.300977245,0.763633615,neg,ns,0.842614816,Slit3,Slit3_Intron,11,35544332,35544381,35544332,35544333,50,+,CGGAGGGCAGAGCAGTGACCTCCAATGATTTACAGGCCTTTAGCTTAATG,"Intron (Slit3-201/Slit3, intron 5 of 35)",11,35121224,35708507,587284,1,Slit3-201,423108,Slit3-201;Slit3-202,Slit3;Slit3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,21,20564,ENSMUSG00000056427,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
1659,cg16176986,0.0000495,0.00000829,5.977637314,6.22E-09,gain,yes,-0.0000448,0.0000141,-3.1802815,0.001620156,neg,ns,0.00556332,0.004125381,1.348559197,0.178462969,pos,ns,0.748451886,0.0000467,0.000141872,0.329063377,0.742329985,pos,ns,0.805336738,Atxn7,Atxn7_Exon,14,14095402,14095451,14095402,14095403,50,-,CGATTTGATGTGTTATTAGCCGAGCACAAAAACAAAACCAGGGAAAAGGA,"Exon (Atxn7-203/Atxn7, exon 9 of 13)",14,13961440,14103482,142043,1,Atxn7-203,133962,Atxn7-203;Atxn7-202;Atxn7-201;Atxn7-207;Atxn7-204;Atxn7-205,Atxn7;Atxn7;Atxn7;Atxn7;Atxn7;Atxn7,0;0;0;7933;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,246103,ENSMUSG00000021738,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14427,cg00547789,0.000057,0.0000115,4.951957559,0.00000121,gain,yes,0.0000622,0.0000196,3.180005697,0.001621649,pos,ns,0.024056072,0.005728741,4.19919008,0.000035,pos,ns,4.455361479,-0.000423702,0.000197011,-2.150652198,0.032276528,neg,ns,0.225688176,Rab39b,Rab39b_fiveUTR,X,75578181,75578230,75578181,75578182,50,+,CGCTCGCAAAGGTGATGAAATGGCAGCAGCATCAGCACCACGCACTCTGA,Promoter (<=1kb),20,75572046,75578231,6186,2,Rab39b-201,1,Rab39b-201,Rab39b,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,3,67790,ENSMUSG00000031202,conserved gene and region,X,75578153,75578359,207,*,207,12,0.497584541,0.943768997,0.057971015,0.00000084,CpGisland,TRUE,U15,NS
26199,cg27478856,-0.00000184,0.000000889,-2.067012318,0.039562857,loss,ns,0.0000048,0.00000151,3.179644216,0.001623609,pos,ns,0.000619678,0.000442312,1.400998322,0.162214816,pos,ns,0.789909482,-0.0000162,0.0000152,-1.066700323,0.286937209,neg,ns,0.973011405,Sox5,Sox5_Intron,6,144367965,144368014,144367965,144367966,50,+,CGAAAGCCAACACGAGCCCGGCTGTAATGGCTGTTGTAATGTTTTAATAG,"Intron (Sox5-209/Sox5, intron 4 of 13)",6,143843739,144781977,938239,2,Sox5-209,413963,Sox5-209;Sox5-212,Sox5;Sox5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,71,20678,ENSMUSG00000041540,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19658,cg00519323,-0.0000165,0.0000119,-1.391581197,0.165046979,loss,ns,0.0000642,0.0000202,3.178561502,0.00162949,pos,ns,0.003227738,0.005919083,0.545310435,0.585932154,pos,ns,0.232152669,0.000128221,0.000203557,0.629902256,0.529222531,pos,ns,0.857075301,Gm28267,Gm28267_Intergenic_upstream,9,100325359,100325408,100325359,100325360,50,-,CGATGTCTGCTAAGAAACCCAATTTCCATGATGAATTGCCCGAAGCCCCT,Distal Intergenic,9,100404495,100404759,265,1,Gm28267-201,-79136,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,29,29,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25161,cg18687508,0.0000112,0.00000797,1.401960081,0.161927657,gain,ns,0.000043,0.0000135,3.178275191,0.001631049,pos,ns,0.004971461,0.003965438,1.253697994,0.210896431,pos,ns,0.675930769,-0.000075,0.000136371,-0.549895835,0.582786778,neg,ns,0.668366576,Gpr3,Gpr3_Intergenic_downstream,4,133204612,133204661,133204612,133204613,50,-,CGGGAGCCTGTTTTCCAGCCTGCGGAAGCTGTGAGCCCGTGAACTCATCT,Distal Intergenic,4,133209340,133211857,2518,2,Gpr3-202,7245,Gpr3-202;Wasf2-201,Gpr3;Wasf2,0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,3,14748,ENSMUSG00000049649,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
60,cg00249744,0.0000842,0.0000061,13.81926574,3.57E-34,gain,yes,-0.0000329,0.0000104,-3.178178921,0.001631573,neg,ns,-0.007860987,0.003033561,-2.591339582,0.010012573,neg,ns,1.999454321,-0.000287129,0.000104324,-2.752286029,0.006266692,neg,ns,0.127038423,Osbp2,Osbp2_Intron,11,3761942,3761991,3761990,3761991,50,-,CACTAACCCTTCTTAAATTTATTCAGGCAGCCGGAGCTGCAGAAGGAGCG,"Intron (Osbp2-201/Osbp2, intron 2 of 13)",11,3703731,3863903,160173,2,Osbp2-201,101912,Osbp2-201;Osbp2-204;Osbp2-206;Osbp2-205,Osbp2;Osbp2;Osbp2;Osbp2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,2,74309,ENSMUSG00000020435,conserved gene but different region,11,3761990,3762439,450,*,450,66,0.755555556,1.027717222,0.146666667,9.10E-63,CpGisland,TRUE,U3,Pr-B
16639,cg10718354,0.0000148,0.00000274,5.394225354,0.000000137,gain,yes,-0.0000148,0.00000465,-3.178132694,0.001631825,neg,ns,0.000932396,0.001361806,0.684675855,0.494060057,pos,ns,0.306220256,-0.000152876,0.0000468,-3.264323038,0.001219925,neg,ns,0.873546434,Gk,Gk_Exon,X,85749657,85749706,85749657,85749658,50,-,CGGCAACTGGAACTGAAGGGCCAGGAGAAACTGGAGCAGCTGGAGCATTA,"Exon (Gm14764-201/Gm14764-201, exon 2 of 2)",20,85701937,85776624,74688,2,Gk-206,26918,Gk-206;Gk-208;Gk-202;Gk-201,Gk;Gk;Gk;Gk,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,14933,ENSMUSG00000025059,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24360,cg00130134,-0.00000837,0.0000083,-1.007773733,0.314349055,loss,ns,0.0000448,0.0000141,3.1766478,0.001639935,pos,ns,0.007246072,0.004132078,1.753614324,0.080484871,pos,ns,1.094285749,-0.000052,0.000142102,-0.365680148,0.71485316,neg,ns,0.904492029,Egln1,Egln1_Exon,8,124914053,124914102,124914053,124914054,50,-,CGACGGTCAGACCAGAAAAACAGCAGTCTATCAAATTTGGGTTCAATGTC,"Exon (Egln1-201/Egln1, exon 3 of 5)",8,124908587,124949324,40738,2,Egln1-201,35222,Egln1-201,Egln1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,112405,ENSMUSG00000031987,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
191,cg23458760,0.0000176,0.00000436,4.051737984,0.0000643,gain,ns,-0.0000235,0.0000074,-3.176082342,0.001643033,neg,ns,0.009274717,0.002168092,4.277823899,0.0000252,pos,ns,4.599080879,-0.000317766,0.0000746,-4.261857966,0.0000269,neg,ns,0.884883479,Ascc2,Ascc2_Exon,11,4646579,4646628,4646627,4646628,50,-,AGACCGGTATTTTGTGTTATACAAACCGCCCCCTAAAGACAACATTCCCG,"Exon (Ascc2-201/Ascc2, exon 3 of 20)",11,4637747,4683385,45639,1,Ascc2-201,8832,Ascc2-201;Ascc2-202,Ascc2;Ascc2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,9,75452,ENSMUSG00000020412,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1459,cg26372885,-0.0000228,0.0000124,-1.832097111,0.06789621,loss,ns,0.000067,0.0000211,3.176054151,0.001643187,pos,ns,0.010191952,0.006182942,1.6483984,0.100284,pos,ns,0.998768351,-0.000279829,0.000212631,-1.31603422,0.189134868,neg,ns,0.853609339,Cdh6,Cdh6_Exon,15,13064430,13064479,13064478,13064479,50,-,TGTAAACGGGTTTTTCTTCCCTGTCCAGCCTCTTGGTGGCCTGTATGTCG,"Exon (Cdh6-201/Cdh6, exon 3 of 12)",15,13028701,13173675,144975,2,Cdh6-201,109196,Cdh6-201;Cdh6-202,Cdh6;Cdh6,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,5,12563,ENSMUSG00000039385,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23934,cg03443502,0.000026,0.0000119,2.190202931,0.029254216,gain,ns,0.0000641,0.0000202,3.175719171,0.001645025,pos,ns,0.01620177,0.005909295,2.741743318,0.006466377,pos,ns,2.189338997,-0.0000119,0.00020322,-0.058339027,0.953516168,neg,ns,0.477131396,Insig2,Insig2_Intron,1,121226952,121227001,121227000,121227001,50,-,TGTTTAAATAAAATATAGTCGCTCTTAGCAAGAGGCTCATTTTCTCCACG,"Intron (Gm29359-201/Gm29359-201, intron 1 of 1)",1,121305893,121307318,1426,2,Insig2-206,80366,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,17,72999,ENSMUSG00000003721,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
806,cg05856738,0.0000346,0.00000957,3.620203488,0.000343707,gain,ns,-0.0000516,0.0000163,-3.175303672,0.001647308,neg,ns,-0.013864349,0.004763656,-2.910442906,0.003870533,neg,ns,2.412229175,0.000351634,0.000163822,2.146445337,0.032613288,pos,ns,0.808495114,Hnrnpul2,Hnrnpul2_Exon,19,8822875,8822924,8822875,8822876,50,+,CGGGATGAGAAGGATGAACATGGCCGAGCTTACTATGAATTCCGAGAGGA,"Exon (Hnrnpul2-201/Hnrnpul2, exon 2 of 14)",19,8820010,8834143,14134,1,Hnrnpul2-201,2865,Hnrnpul2-201;Hnrnpul2-202;Ttc9c-202;Ttc9c-204;Ttc9c-201;Ttc9c-203,Hnrnpul2;Hnrnpul2;Ttc9c;Ttc9c;Ttc9c;Ttc9c,0;0;-3542;-3951;-3581;-3643,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,68693,ENSMUSG00000071659,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U4,Pr-F
14891,cg24445834,-0.0000261,0.00000774,-3.367566472,0.000853971,loss,ns,0.0000417,0.0000131,3.174656185,0.00165087,pos,ns,0.003429849,0.00385071,0.890705461,0.373777956,pos,ns,0.427386315,-0.000153592,0.000132426,-1.159832954,0.24700933,neg,ns,0.804861532,Pax3,Pax3_Exon,1,78103428,78103477,78103476,78103477,50,+,GTCCAAGCTCTTCATATGGTCTAGTCTCTGACTGCAGCTGGCCGACACCG,"Exon (Pax3-201/Pax3, exon 8 of 9)",1,78101267,78196838,95572,2,Pax3-201,93361,Pax3-201;Pax3-202,Pax3;Pax3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,17,18505,ENSMUSG00000004872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17638,cg11886779,0.0000847,0.0000135,6.292681563,1.06E-09,gain,yes,-0.0000726,0.0000229,-3.174289464,0.001652891,neg,ns,0.000251793,0.006700583,0.037577734,0.970048548,pos,ns,0.01320653,-0.000228582,0.000230432,-0.991967602,0.321986965,neg,ns,0.571018922,Ifnar2,Ifnar2_Intergenic_upstream,16,91334427,91334476,91334427,91334428,50,-,CGTTAGGTCACAATATCCACGGGTGGACAAAATGTAGTAAAAATTTTATG,Distal Intergenic,16,91372783,91405589,32807,1,Ifnar2-201,-38356,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,15976,ENSMUSG00000022971,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15951,cg05400092,-0.00000353,0.00000247,-1.430634677,0.153542147,loss,ns,0.0000133,0.00000419,3.173073681,0.001659607,pos,ns,0.00181346,0.001228314,1.476381901,0.140856457,pos,ns,0.85122324,-0.0000301,0.0000422,-0.712793309,0.476509843,neg,ns,0.932108951,Gm50420,Gm50420_Intergenic_downstream,18,83944724,83944773,83944772,83944773,50,+,TTGACGTGGCGATTGATAACTCATAAATGCAAGCAGGAATGACAAATGCG,Distal Intergenic,18,83905796,83905942,147,1,Gm50420-201,38928,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,9,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10714,cg19186858,0.0000181,0.0000118,1.538879441,0.124853799,gain,ns,0.0000634,0.00002,3.171967643,0.001665739,pos,ns,0.010370439,0.005859873,1.769737719,0.077753837,pos,ns,1.109278171,0.0000431,0.000201521,0.213714025,0.830910565,pos,ns,0.7095676,Unc5a,Unc5a_Exon,13,55002824,55002873,55002872,55002873,50,+,CCACTTGAGGTTGCCCCTAGCTGGCTGTCAGACCCTGCTGAGTCCCATCG,"Exon (Unc5a-201/Unc5a, exon 11 of 16)",13,54949411,55006018,56608,1,Unc5a-201,53413,Hk3-201;Hk3-208;Hk3-204;Hk3-203;Hk3-202;Unc5a-201;Unc5a-202;Unc5a-203;Unc5a-205;Unc5a-204,Hk3;Hk3;Hk3;Hk3;Hk3;Unc5a;Unc5a;Unc5a;Unc5a;Unc5a,18512;18361;18423;18031;18031;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,12,107448,ENSMUSG00000025876,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23327,cg04310193,-0.0000222,0.0000127,-1.752505386,0.080675549,loss,ns,-0.0000683,0.0000215,-3.171682432,0.001667324,neg,ns,0.008491623,0.006306859,1.346410771,0.179153709,pos,ns,0.746774196,-0.0000693,0.000216892,-0.31934041,0.749683478,neg,ns,0.864854943,Slc6a9,Slc6a9_Intron,4,117849721,117849770,117849769,117849770,50,+,GAATCTGCTCTGTGTATCAAAGCTGCATTGTCCTAGCTCCCGGGGAGACG,"Intron (Slc6a9-202/Slc6a9, intron 3 of 14)",4,117834506,117869296,34791,1,Slc6a9-202,15215,Slc6a9-202;Slc6a9-201;Slc6a9-207;Slc6a9-210;Slc6a9-206;Slc6a9-204;Slc6a9-211;Slc6a9-209,Slc6a9;Slc6a9;Slc6a9;Slc6a9;Slc6a9;Slc6a9;Slc6a9;Slc6a9,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,8,14664,ENSMUSG00000028542,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11523,cg16538283,0.000206517,0.0000189,10.94411537,8.68E-24,gain,yes,-0.000101676,0.0000321,-3.17162955,0.001667617,neg,ns,0.063504277,0.009391881,6.761614045,6.79E-11,pos,yes,10.16817639,-0.002849653,0.000322986,-8.822836507,8.29E-17,neg,yes,0.802900328,Mtss1,Mtss1_Exon,15,58947337,58947386,58947385,58947386,50,+,GGATCTGAGATGACGGGAACATGCCGGGCCCAATGGTGTAATAATGAGCG,"Exon (Mtss1-201/Mtss1, exon 12 of 15)",15,58941234,59081989,140756,2,Mtss1-201,134603,Mtss1-201;Mtss1-202;Mtss1-204;Mtss1-205;Mtss1-206;Mtss1-210;Mtss1-208;Mtss1-207;Mtss1-211,Mtss1;Mtss1;Mtss1;Mtss1;Mtss1;Mtss1;Mtss1;Mtss1;Mtss1,0;0;0;0;0;0;25153;9450;93210,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,4,211401,ENSMUSG00000022353,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7018,cg10590786,-0.0000108,0.0000193,-0.562588342,0.574121837,loss,ns,0.000103806,0.0000327,3.171562826,0.001667988,pos,ns,0.009489953,0.009588815,0.989689776,0.323097617,pos,ns,0.490666245,-0.0000324,0.000329759,-0.098285765,0.921768901,neg,ns,0.503918263,Tfap2a,Tfap2a_Intergenic_downstream,13,40651178,40651227,40651226,40651227,50,+,ATCACAAAAGATTTTTGTTTTGCCTGCAGCTAGTTCTGGGGTGACTCACG,Distal Intergenic,13,40716724,40728944,12221,2,Tfap2a-209,77717,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,15,57,21418,ENSMUSG00000021359,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20348,cg09151897,0.000135888,0.00000727,18.68263804,1.05E-52,gain,yes,-0.0000392,0.0000124,-3.171397213,0.00166891,neg,ns,0.003736435,0.003620089,1.032139117,0.302811505,pos,ns,0.518827628,0.000172833,0.000124495,1.388278269,0.166049132,pos,ns,0.394590772,Hoxc5,Hoxc5_Exon,15,103009763,103009812,103009811,103009812,50,-,CCTTTTATTCGCCACAGGAGAATGTCGTGTTCAGTTCCAGCCGGGGGCCG,"Exon (Hoxc6-202/Hoxc6, exon 2 of 3)",15,102967443,103015676,48234,1,Hoxc5-202,42320,Hoxc5-202;Hoxc5-201;Hoxc6-202;Hoxc6-203;Hoxc6-201,Hoxc5;Hoxc5;Hoxc6;Hoxc6;Hoxc6,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,72,134,15424,ENSMUSG00000022485,mapped to different genes,15,103009647,103009812,166,*,166,14,0.602409639,0.948184415,0.084337349,5.77E-10,CpGisland,TRUE,U13,Hc-P
13795,cg11260459,0.0000228,0.0000111,2.057502754,0.04047396,gain,ns,0.0000596,0.0000188,3.171335196,0.001669255,pos,ns,0.025522973,0.005508758,4.633162539,0.00000531,pos,ns,5.274961231,-0.000638392,0.000189446,-3.369789397,0.000847356,neg,ns,0.184534256,Irx2,Irx2_Intron,13,72816243,72816292,72816243,72816244,50,-,CGAAATTGTAGACTTGATGTTGTGCGGCAATCCATAATTTATGAGTGGAC,"Intron (D730050B12Rik-201/D730050B12Rik-201, intron 1 of 3)",13,72632597,72633770,1174,1,Irx2-205,183695,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,3,16372,ENSMUSG00000001504,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15137,cg02520894,-0.0000341,0.0000291,-1.173229223,0.241604555,loss,ns,0.000156605,0.0000494,3.171243631,0.001669764,pos,ns,0.032016503,0.01446752,2.21299183,0.027626406,pos,ns,1.558675612,-0.000292379,0.000497537,-0.587652858,0.557193128,neg,ns,0.579489714,Maff,Maff_Exon,15,79357617,79357666,79357665,79357666,50,-,AGCTGCAGAAGCAGAAGTCGGAGCTGGAGCGCGAGGTGGACAAGCTGGCG,"Exon (Maff-203/Maff, exon 3 of 3)",15,79346621,79359072,12452,1,Maff-203,10996,Maff-203;Maff-201;Maff-202;Maff-204;Tmem184b-201;Tmem184b-202;Tmem184b-204,Maff;Maff;Maff;Maff;Tmem184b;Tmem184b;Tmem184b,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,5,17133,ENSMUSG00000042622,conserved gene but different region,15,79357314,79357884,571,*,571,71,0.712784588,0.979251208,0.124343257,1.75E-61,CpGisland,TRUE,U4,Pr-F
9011,cg07982889,0.0000211,0.0000125,1.690550441,0.09192786,gain,ns,-0.0000673,0.0000212,-3.170822105,0.001672112,neg,ns,0.004385633,0.006218284,0.705280258,0.481165438,pos,ns,0.317705576,-0.000258029,0.000213846,-1.206607747,0.228503211,neg,ns,0.211152075,Arl3,Arl3_Intergenic_downstream,19,46528772,46528821,46528772,46528773,50,+,CGGCATAATCGCTGACTTTCAGCTGTGCACCGACATGTTCCCCAGCTCAG,Downstream (2-3kb),19,46531135,46542813,11679,2,Arl3-203,13992,Arl3-201;Arl3-205;Arl3-204;Arl3-203,Arl3;Arl3;Arl3;Arl3,44272;44377;29571;13992,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,2,2,56350,ENSMUSG00000025035,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U4,Pr-F
27498,cg14627911,0.0000335,0.00000447,7.492450539,7.11E-13,gain,yes,-0.0000241,0.00000759,-3.170807799,0.001672192,neg,ns,0.002093093,0.002222809,0.941643207,0.347108549,pos,ns,0.45953469,-0.000155341,0.0000764,-2.032141974,0.042991584,neg,ns,0.088089669,Nfatc2,Nfatc2_Promoter,2,168601775,168601824,168601775,168601776,50,-,CGCTCCGTGTTTATAGGCTTTCAATGCAGTAAAATAACGGGATTCCCTCA,Promoter (<=1kb),2,168519098,168601657,82560,2,Nfatc2-205,-167,Nfatc2-203;Nfatc2-209;Nfatc2-205,Nfatc2;Nfatc2;Nfatc2,-143;-120;-118,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,4,4,18019,ENSMUSG00000027544,conserved gene and region,2,168601147,168601870,724,*,724,65,0.662983425,0.81707063,0.089779006,2.91E-46,CpGisland,TRUE,U3,Pr-B
17012,cg21938936,-0.00000793,0.00000504,-1.574208793,0.116459169,loss,ns,0.0000271,0.00000856,3.169610691,0.001678876,pos,ns,0.006869955,0.002507105,2.740194411,0.006496194,pos,ns,2.187341038,-0.000180145,0.0000862,-2.089389004,0.03748774,neg,ns,0.90622184,Gm9541,Gm9541_Intergenic_downstream,9,87865173,87865222,87865173,87865174,50,+,CGTCTGATCTATTCTCAAAATACGGAAGTGCTTGAAGCCCGACCACCTGC,Distal Intergenic,9,87769770,87770271,502,1,Gm9541-201,95403,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,3,671731,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2211,cg12499300,-0.0000121,0.00000595,-2.024654735,0.043759826,loss,ns,0.0000321,0.0000101,3.169454328,0.001679751,pos,ns,0.010341389,0.002963725,3.489321721,0.000554401,pos,ns,3.256175642,-0.000281431,0.000101922,-2.761230327,0.006101673,neg,ns,0.885318179,Vps41,Vps41_Intergenic_upstream,13,18613622,18613671,18613622,18613623,50,-,CGTAAGAATTTTCTGTAGATATGAAATGACATTGACAAATATCCAATACC,Distal Intergenic,13,18717286,18748999,31714,1,Vps41-204,-103664,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,4,218035,ENSMUSG00000041236,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9858,cg26878566,0.0000544,0.0000109,5.01057222,0.000000914,gain,yes,-0.0000584,0.0000184,-3.168036331,0.001687704,neg,ns,0.012989967,0.005403546,2.403970807,0.016804716,pos,ns,1.774568827,-0.000202385,0.000185828,-1.089102431,0.276954639,neg,ns,0.616517205,Gm7172,Gm7172_Intergenic_upstream,12,51195588,51195637,51195636,51195637,50,-,CACAGAAAACATTACCAAATGAGCCTGCTTTTAGCCTACTGCCTCATACG,Distal Intergenic,12,51133551,51134702,1152,2,Gm7172-201,-60935,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,3,636070,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1077,cg00527415,-0.0000329,0.0000112,-2.936426368,0.003568713,loss,ns,0.0000603,0.0000191,3.167706745,0.001689557,pos,ns,0.013809923,0.005581064,2.474424727,0.013880004,pos,ns,1.857610419,-0.000368645,0.000191932,-1.920704359,0.055686067,neg,ns,0.614891246,Gm14515,Gm14515_Intergenic_upstream,X,11494364,11494413,11494364,11494365,50,+,CGCTCAGCAGCCCGGCATTTCTTCCGACTGTCAGACTTAGCAGATTGCTT,Distal Intergenic,20,11601354,11601569,216,1,Gm14515-201,-106941,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,21,28,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
938,cg02586638,0.000032,0.0000134,2.387547109,0.017560061,gain,ns,0.0000722,0.0000228,3.16753768,0.001690509,pos,ns,0.006814476,0.006679306,1.020237237,0.308411493,pos,ns,0.510869446,0.000189188,0.000229701,0.823628687,0.410783753,pos,ns,0.402916278,Gata3,Gata3_Promoter,2,9892580,9892629,9892580,9892581,50,-,CGCTTGCCTGCTCACCAGTGTTTTATGGCGTTTTCTTGCCTCTGACTTTA,Promoter (2-3kb),2,9874702,9890034,15333,2,Gata3-202,-2595,9230102O04Rik-202;Gata3-202;Gata3-204;Gata3-203,9230102O04Rik;Gata3;Gata3;Gata3,-3040;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,12,21,14462,ENSMUSG00000015619,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
24620,cg19683772,0.000187444,0.0000115,16.26873139,1.88E-43,gain,yes,-0.000062,0.0000196,-3.16696769,0.001693721,neg,ns,-0.005606326,0.005734486,-0.977651057,0.329009247,neg,ns,0.482791896,0.000493524,0.000197209,2.502550099,0.012844812,pos,ns,0.495059144,Kif5a,Kif5a_Exon,10,127262779,127262828,127262779,127262780,50,+,CGCTGTCGTCCCCTTGGAAAATGGGGATGAACTTGTCTCCCCGCAGAATC,Promoter (<=1kb),10,127225696,127263348,37653,2,Kif5a-201,520,Dctn2-202;Dctn2-201;Kif5a-201;Kif5a-202;Kif5a-203,Dctn2;Dctn2;Kif5a;Kif5a;Kif5a,-3540;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,8,16572,ENSMUSG00000074657,conserved gene and region,10,127262730,127263217,488,*,488,47,0.653688525,0.908068731,0.096311475,3.88E-35,CpGisland,TRUE,U3,Pr-B
2459,cg13843674,-0.00000196,0.00000268,-0.732962738,0.464135024,loss,ns,0.0000144,0.00000455,3.166663794,0.001695435,pos,ns,0.003974953,0.001331656,2.984970551,0.003061783,pos,ns,2.514025584,-0.000202994,0.0000458,-4.432625795,0.0000129,neg,ns,0.945237516,Gm12353,Gm12353_Exon,4,19611757,19611806,19611805,19611806,50,-,AGTTTTTCCTTTAGTTGTTCATAACTCTTATATGGTGGTAGATCCAAGCG,"Exon (Wwp1-202/Wwp1, exon 25 of 25)",4,19605451,19651130,45680,1,Gm12353-201,6306,Gm12353-201;Rmdn1-201;Wwp1-202;Wwp1-201,Gm12353;Rmdn1;Wwp1;Wwp1,0;36550;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11644,cg20804290,-0.000000318,0.00000134,-0.237601234,0.812347349,loss,ns,0.0000072,0.00000227,3.16664077,0.001695565,pos,ns,0.001455227,0.000666482,2.183445503,0.029752569,pos,ns,1.526475528,-0.0000125,0.0000229,-0.54523871,0.585981417,neg,ns,0.95595449,Gm973,Gm973_Exon,1,59597041,59597090,59597041,59597042,50,-,CGCAAGCTGCACATCGACATGACGCCGTTCCTGAAGGTGATCTCACACTG,"Exon (Gm973-210/Gm973, exon 2 of 3)",1,59516264,59634509,118246,1,Gm973-201,80777,Gm973-201;Gm973-210;Sumo1-204,Gm973;Gm973;Sumo1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,381260,ENSMUSG00000047361,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20323,cg20381985,0.0000999,0.0000115,8.710105621,1.85E-16,gain,yes,-0.0000617,0.0000195,-3.166620493,0.00169568,neg,ns,0.002598388,0.005707705,0.455242214,0.649253667,pos,ns,0.187585589,0.000167598,0.000196288,0.85383968,0.39385312,pos,ns,0.475902957,Hoxc6,Hoxc6_Exon,15,102998225,102998274,102998225,102998226,50,-,CGAGCGCTCCGCAGAACAGTCCTCCCTGTAAGAGCCTAACCATTGCCAGG,Promoter (<=1kb),15,102998257,103010768,12512,1,Hoxc6-202,0,Hoxc5-202;Hoxc6-202;Hoxc6-203;Hoxc8-201;Hoxc8-202,Hoxc5;Hoxc6;Hoxc6;Hoxc8;Hoxc8,0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,15425,ENSMUSG00000001661,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
4351,cg08067367,0.0000541,0.0000138,3.930166448,0.000104727,gain,ns,-0.0000741,0.0000234,-3.166473319,0.001696511,neg,ns,0.019813297,0.0068515,2.891818766,0.004101012,pos,ns,2.387108931,-0.000693826,0.000235623,-2.944650671,0.003477761,neg,ns,0.362766468,Erc2,Erc2_Intron,14,28468143,28468192,28468191,28468192,50,-,TAGAATTTGTAACAAATGACCACTTTGTGTTTGCATTAATGCCAAACACG,"Intron (Erc2-205/Erc2, intron 19 of 19)",14,27622428,28478535,856108,1,Erc2-205,845715,Erc2-205;Erc2-201;Erc2-208;Erc2-204;Erc2-214,Erc2;Erc2;Erc2;Erc2;Erc2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,14,17,238988,ENSMUSG00000040640,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23896,cg18468479,0.0000466,0.00000706,6.603945417,1.74E-10,gain,yes,-0.000038,0.000012,-3.166426981,0.001696773,neg,ns,-0.008202798,0.003511988,-2.335656452,0.020146631,neg,ns,1.695797566,0.0000322,0.000120777,0.266256582,0.790218613,pos,ns,0.773192757,Ctnnb1,Ctnnb1_threeUTR,9,120959838,120959887,120959838,120959839,50,-,CGAGGGGTGGGCTGGTATCTCAGAAAGTGCCTGACACACTAACCAAGCTG,3' UTR,9,120933400,120960507,27108,1,Ctnnb1-201,26438,Ctnnb1-201;Ctnnb1-208;Ctnnb1-209;Ctnnb1-214;Ctnnb1-211;Ctnnb1-213;Ctnnb1-202;Ctnnb1-210;Ctnnb1-212;Ctnnb1-205;Ctnnb1-206;Ctnnb1-215;Ulk4-210;Ulk4-207;Ulk4-205;Ulk4-209,Ctnnb1;Ctnnb1;Ctnnb1;Ctnnb1;Ctnnb1;Ctnnb1;Ctnnb1;Ctnnb1;Ctnnb1;Ctnnb1;Ctnnb1;Ctnnb1;Ulk4;Ulk4;Ulk4;Ulk4,0;0;0;0;0;0;4713;4541;4381;0;2971;0;0;148638;85045;317310,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,TRUE,FALSE,threeUTR,4,9,12387,ENSMUSG00000006932,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7056,cg25682023,0.00000722,0.0000146,0.494489098,0.621311042,gain,ns,0.0000785,0.0000248,3.166160966,0.001698276,pos,ns,0.022531819,0.007265492,3.101210395,0.002104471,pos,ns,2.676857132,-0.000470848,0.00024986,-1.884450067,0.060439573,neg,ns,0.212752518,Tfap2a,Tfap2a_Intron,13,40726232,40726281,40726232,40726233,50,+,CGCAATGATTCCGGGTGGATGGTACTAAGTTGCTTTATTACAGGTTTTAT,"Intron (Tfap2a-201/Tfap2a, intron 2 of 6)",13,40715302,40730443,15142,2,Tfap2a-201,4162,Tfap2a-201;Tfap2a-202;Tfap2a-205;Tfap2a-203;Tfap2a-209;Tfap2a-208;Tfap2a-206;Tfap2a-204;Tfap2a-207,Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,57,21418,ENSMUSG00000021359,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
26519,cg09946098,0.00000139,0.0000108,0.128340031,0.897963106,gain,ns,-0.0000581,0.0000184,-3.165031649,0.001704672,neg,ns,0.001996097,0.005376376,0.371271834,0.710688683,pos,ns,0.1483206,0.0000533,0.000184893,0.28830625,0.773304992,pos,ns,0.66026618,Casz1,Casz1_Intron,4,148867358,148867407,148867358,148867359,50,+,CGGTCGGTCACAGTTGTAAAACAACAACACACAGAGTTGGCAACTAACGA,"Intron (Casz1-201/Casz1, intron 2 of 15)",4,148804429,148945129,140701,1,Casz1-201,62929,Casz1-201;Casz1-202,Casz1;Casz1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,94,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10777,cg23798080,-0.0000118,0.00000506,-2.338333742,0.020005423,loss,ns,0.0000272,0.00000859,3.164863515,0.001705626,pos,ns,0.008645086,0.002516889,3.434830317,0.000673682,pos,ns,3.171545304,-0.000158174,0.0000866,-1.827424575,0.068597171,neg,ns,0.877582719,Vti1a,Vti1a_Intron,19,55384439,55384488,55384487,55384488,50,-,CTGTGCATAAAGTGTGTCAAACTTCAGCTACAGACCAGGGGGTGAAGTCG,"Intron (Vti1a-206/Vti1a, intron 4 of 7)",19,55316295,55577001,260707,1,Vti1a-206,68144,Vti1a-206;Vti1a-205;Vti1a-202;Vti1a-201;Vti1a-203,Vti1a;Vti1a;Vti1a;Vti1a;Vti1a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,32,53611,ENSMUSG00000024983,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26236,cg07653944,0.0000463,0.00000646,7.155982518,6.04E-12,gain,yes,-0.0000347,0.000011,-3.164608992,0.001707071,neg,ns,-0.010613851,0.003216957,-3.299344666,0.001081996,neg,ns,2.96577427,0.000318775,0.000110631,2.881431842,0.004234924,pos,ns,0.874705737,Smurf1,Smurf1_Exon,5,144899161,144899210,144899161,144899162,50,-,CGAACTGCATCAGTATCTGAGGGGTTTAGTTTGCATAGATCCAAACGCTG,"Exon (Smurf1-203/Smurf1, exon 5 of 19)",5,144876495,144965839,89345,2,Smurf1-203,66629,Smurf1-203;Smurf1-201;Smurf1-202;Smurf1-205,Smurf1;Smurf1;Smurf1;Smurf1,0;0;0;-1167,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,75788,ENSMUSG00000038780,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8356,cg07605328,0.0000859,0.0000141,6.076132454,3.61E-09,gain,yes,-0.000076,0.000024,-3.163588566,0.001712877,neg,ns,0.008466988,0.007035643,1.203442077,0.229723494,pos,ns,0.638794586,-0.000225677,0.000241955,-0.932722837,0.351688964,neg,ns,0.413222102,Zeb2,Zeb2_Intron,2,45044899,45044948,45044947,45044948,50,-,AAATCTGTTTGGATTTCTGTAAATTGGAGTCCGACAAGCCTGCAGTTCCG,"Intron (Zeb2-212/Zeb2, intron 3 of 10)",2,44983632,45117395,133764,2,Zeb2-212,72447,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-218;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14,cg17523042,0.0000532,0.00000586,9.069214582,1.41E-17,gain,yes,-0.0000315,0.00000996,-3.163298787,0.001714529,neg,ns,0.003535871,0.002916833,1.212229457,0.226347634,pos,ns,0.645224041,0.000127386,0.00010031,1.269924988,0.205063751,pos,ns,0.674295522,Patz1,Patz1_fiveUTR,11,3294436,3294485,3294484,3294485,50,-,ACTCTCTGCCCTTTTTCCAGGTGTGGGTTGGGAGCAGCAGCGGCCTGCCG,5' UTR,11,3289167,3309083,19917,1,Patz1-204,5269,Patz1-209;Patz1-204;Patz1-210;Patz1-207;Patz1-203;Patz1-205;Patz1-201;Patz1-202;Patz1-206;Patz1-211;Patz1-208;Patz1-212,Patz1;Patz1;Patz1;Patz1;Patz1;Patz1;Patz1;Patz1;Patz1;Patz1;Patz1;Patz1,5562;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,9,56218,ENSMUSG00000020453,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7023,cg16795940,0.0000606,0.0000108,5.598325296,4.77E-08,gain,yes,0.0000581,0.0000184,3.162211318,0.001720742,pos,ns,0.018126767,0.005386426,3.365268159,0.000860862,pos,ns,3.065066633,-0.000421506,0.000185239,-2.27547511,0.023559704,neg,ns,0.581081911,Zfpm2,Zfpm2_fiveUTR,15,40666178,40666227,40666178,40666179,50,+,CGTCTGATAAAACCTGATTGATTGATGTCTGGCTTCCCCACCATCACAGG,5' UTR,15,40655035,40872723,217689,1,Zfpm2-202,11143,Zfpm2-202;Zfpm2-201;Zfpm2-204;Zfpm2-203,Zfpm2;Zfpm2;Zfpm2;Zfpm2,0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,41,22762,ENSMUSG00000022306,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13981,cg16050082,0.0000652,0.0000111,5.895832607,9.73E-09,gain,yes,0.0000594,0.0000188,3.161009606,0.001727632,pos,ns,0.023134861,0.005503814,4.203423651,0.0000344,pos,ns,4.463044695,-0.000404438,0.000189276,-2.136764774,0.033399724,neg,ns,0.533434344,Irak1,Irak1_Exon,X,74023610,74023659,74023610,74023611,50,+,CGAACTGGCACCAGTCGGCGGGCTCCAGGGCGTCCATCACTTTGTAGAAG,Promoter (<=1kb),20,74013914,74023918,10005,2,Irak1-206,259,Irak1-206;Irak1-204;Irak1-202;Irak1-207;Irak1-220;Irak1-222;Irak1-201;Irak1-211;Irak1-203;Irak1-205;Irak1-214;Irak1-210;Irak1-215;Irak1-213;Irak1-209;Irak1-208;Irak1-221;Irak1-217;Irak1-218;Irak1-216;Irak1-212;Mecp2-202;Mecp2-205,Irak1;Irak1;Irak1;Irak1;Irak1;Irak1;Irak1;Irak1;Irak1;Irak1;Irak1;Irak1;Irak1;Irak1;Irak1;Irak1;Irak1;Irak1;Irak1;Irak1;Irak1;Mecp2;Mecp2,0;0;0;0;0;0;0;-3669;0;0;-2622;-1114;-959;-519;-437;-666;0;0;-234;-102;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,16179,ENSMUSG00000031392,conserved gene and region,X,74023589,74024003,415,*,415,51,0.739759036,0.902481665,0.122891566,5.20E-44,CpGisland,TRUE,U1,Pr-A
19132,cg02476543,0.00000569,0.00000655,0.867650773,0.386256682,gain,ns,-0.0000352,0.0000111,-3.159189969,0.001738113,neg,ns,0.0126764,0.003261638,3.886513456,0.000124396,pos,ns,3.90519287,-0.000944591,0.000112167,-8.421253885,1.40E-15,neg,yes,0.645424809,Copb2,Copb2_Exon,9,98577334,98577383,98577334,98577335,50,+,CGGGAGGAACCTGCCATGTCCATGGATGCCAATGGAAAGATAATTTGGGC,"Exon (Copb2-201/Copb2, exon 9 of 22)",9,98563731,98588382,24652,1,Copb2-201,13603,Copb2-201;Copb2-202;Gm47147-201,Copb2;Copb2;Gm47147,0;-2568;-568,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,50797,ENSMUSG00000032458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7036,cg27003880,-0.0000186,0.00000815,-2.277238196,0.023452958,loss,ns,0.0000438,0.0000139,3.159001497,0.001739202,pos,ns,0.008304821,0.004058255,2.046401821,0.041560086,pos,ns,1.381323567,-0.000342658,0.000139563,-2.455217775,0.014628834,neg,ns,0.155128663,Tfap2a,Tfap2a_Intergenic_downstream,13,40713190,40713239,40713190,40713191,50,+,CGACTGTAATTGATTTATTTGAAACCAGAGGTTAAGGACTGAATTAGCTA,Downstream (2-3kb),13,40716724,40728944,12221,2,Tfap2a-209,15705,Tfap2a-201;Tfap2a-202;Tfap2a-205;Tfap2a-203;Tfap2a-209;Tfap2a-208;Tfap2a-206,Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a,0;0;0;0;0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,15,57,21418,ENSMUSG00000021359,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
992,cg11997728,-0.0000331,0.0000138,-2.390934642,0.017401861,loss,ns,0.0000742,0.0000235,3.158227489,0.00174368,pos,ns,0.003561345,0.006882258,0.517467558,0.605198852,pos,ns,0.218101905,-0.000285134,0.00023668,-1.204720844,0.229230003,neg,ns,0.859870868,Syt7,Syt7_threeUTR,19,10426302,10426351,10426302,10426303,50,-,CGAGGACTCCACCCTGTCCACGGCCACTACCCTTGAGTCTATCCCCAGCT,3' UTR,19,10389090,10448444,59355,1,Syt7-201,37212,Syt7-201;Syt7-208;Syt7-206;Syt7-203;Syt7-202;Syt7-210;Syt7-211;Syt7-204;Syt7-205;Syt7-207;Syt7-209;Syt7-213;Syt7-214;Syt7-215;Syt7-212,Syt7;Syt7;Syt7;Syt7;Syt7;Syt7;Syt7;Syt7;Syt7;Syt7;Syt7;Syt7;Syt7;Syt7;Syt7,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,9,10,54525,ENSMUSG00000024743,conserved gene and region,19,10426290,10426439,150,*,150,11,0.666666667,0.682100041,0.073333333,0.000000279,CpGisland,TRUE,U11,Tr-P
16287,cg03095484,0.000135418,0.0000204,6.6458396,1.36E-10,gain,yes,-0.000109293,0.0000346,-3.157246932,0.001749369,neg,ns,-0.007718905,0.01014152,-0.76111917,0.447164465,neg,ns,0.349532716,0.00095557,0.000348766,2.739860326,0.006502641,pos,ns,0.827541339,Nfix,Nfix_Exon,8,84716265,84716314,84716313,84716314,50,-,TTTGCCCTGGCCGCTACCGTTGGGCTGCGAACAACATAAATAGAGTGACG,"Exon (Nfix-204/Nfix, exon 9 of 11)",8,84704712,84773396,68685,2,Nfix-204,57082,Nfix-204;Nfix-201;Nfix-202;Nfix-203;Nfix-206;Nfix-205,Nfix;Nfix;Nfix;Nfix;Nfix;Nfix,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,20,49,18032,ENSMUSG00000001911,conserved gene but different region,8,84716235,84716387,153,*,153,15,0.62745098,1,0.098039216,1.26E-11,CpGisland,TRUE,NA,NRS
26859,cg24761695,-3.97E-08,0.00000155,-0.025564602,0.979621069,loss,ns,0.00000833,0.00000264,3.157237464,0.001749424,pos,ns,0.00195098,0.000773036,2.523790499,0.012109127,pos,ns,1.916887175,-0.0000508,0.0000266,-1.911105534,0.056913104,neg,ns,0.045893329,4930404H24Rik,4930404H24Rik_Exon,2,153492806,153492855,153492854,153492855,50,-,ACCCACCAGAGGAAGTGTATTCTGCAGGAGACGTTAATCCCCTCTCCCCG,Promoter (<=1kb),2,153492790,153493841,1052,1,4930404H24Rik-201,16,4930404H24Rik-201;Nol4l-201;Nol4l-203,4930404H24Rik;Nol4l;Nol4l,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,4,78151,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22240,cg09520928,0.0000657,0.00000856,7.679879125,2.10E-13,gain,yes,-0.0000459,0.0000145,-3.156564034,0.001753341,neg,ns,-0.012261285,0.00426063,-2.877810751,0.004282537,neg,ns,2.368298835,0.000369897,0.000146523,2.52450638,0.012084999,pos,ns,0.82802532,Gm11679,Gm11679_Intergenic_upstream,11,112239429,112239478,112239429,112239430,50,-,CGTCAGCCAGCAATAATTTGCAATCCAAACAGACTTGACGCTCCCTGACA,Distal Intergenic,11,112042800,112043578,779,2,Gm11679-201,-195900,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,7,100504331,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15119,cg15054687,-0.0000187,0.00000461,-4.052584153,0.0000641,loss,ns,-0.0000247,0.00000782,-3.155641492,0.001758721,neg,ns,0.000903711,0.002292404,0.394219795,0.69368982,pos,ns,0.158834679,-0.000220762,0.0000788,-2.800280203,0.005426329,neg,ns,0.89239555,Wsb1,Wsb1_threeUTR,11,79243413,79243462,79243461,79243462,50,-,GTACACCTTGCAGCCGAATGCAAGGTTACTTCATCCTATGGTAAAGGTCG,3' UTR,11,79239372,79254671,15300,2,Wsb1-201,11209,Wsb1-201;Wsb1-206;Wsb1-202;Wsb1-207;Wsb1-205;Wsb1-203;Wsb1-204,Wsb1;Wsb1;Wsb1;Wsb1;Wsb1;Wsb1;Wsb1,0;-389;0;-464;0;0;7562,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,7,7,78889,ENSMUSG00000017677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16830,cg25489080,0.0000782,0.00000873,8.957184054,3.17E-17,gain,yes,-0.0000468,0.0000148,-3.154580457,0.001764927,neg,ns,-0.009625295,0.004343885,-2.215826198,0.027429541,neg,ns,1.561781456,0.000308671,0.000149386,2.06626332,0.039633977,pos,ns,0.819913912,Lrba,Lrba_Intron,3,86700318,86700367,86700366,86700367,50,-,AACATTTAATTATATCATGCCCAAAGGTGTAAAGCTGTCAAATAAATCCG,"Intron (Lrba-202/Lrba, intron 47 of 50)",3,86224680,86746712,522033,1,Lrba-202,475638,Lrba-202;Lrba-204;Lrba-201;Lrba-206,Lrba;Lrba;Lrba;Lrba,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,45,80877,ENSMUSG00000028080,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26200,cg07582800,-0.00002,0.0000112,-1.785192993,0.075207622,loss,ns,0.0000601,0.000019,3.15436935,0.001766164,pos,ns,0.010693103,0.005577418,1.917213815,0.056129683,pos,ns,1.25080741,-0.00030039,0.000191807,-1.566105467,0.118344115,neg,ns,0.848390625,Sox5,Sox5_Intron,6,144367929,144367978,144367977,144367978,50,-,TTAGGCATTCACTCGGAAGCATATGTTCATTGGGAGCGAAAGCCAACACG,"Intron (Sox5-209/Sox5, intron 4 of 13)",6,143843739,144781977,938239,2,Sox5-209,413999,Sox5-209;Sox5-212,Sox5;Sox5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,71,20678,ENSMUSG00000041540,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5085,cg10474903,-0.00000338,0.00000282,-1.198154255,0.231772188,loss,ns,-0.0000151,0.0000048,-3.153953712,0.001768602,neg,ns,-0.000978218,0.001405733,-0.695877138,0.487027138,neg,ns,0.312446839,-0.00000264,0.0000483,-0.054651808,0.956451068,neg,ns,0.934669119,Brd4,Brd4_Intron,17,32224992,32225041,32225040,32225041,50,+,AACAAATGATCTGGCTTCATGGCACAGCCGAGCCGAAAGGTTTGGCTACG,"Intron (Brd4-201/Brd4, intron 4 of 19)",17,32196274,32284097,87824,2,Brd4-201,59056,Brd4-201;Brd4-203;Brd4-202;Brd4-212;Brd4-205;Brd4-204;Brd4-210;Brd4-211,Brd4;Brd4;Brd4;Brd4;Brd4;Brd4;Brd4;Brd4,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,5,57261,ENSMUSG00000024002,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23050,cg20964784,-0.00000808,0.00000439,-1.84108725,0.066564183,loss,ns,0.0000235,0.00000745,3.153496198,0.001771289,pos,ns,0.007086419,0.002184046,3.244629059,0.001304486,pos,ns,2.884560536,-0.000253535,0.0000751,-3.375553112,0.000830425,neg,ns,0.883987223,Spred1,Spred1_Exon,2,117177848,117177897,117177896,117177897,50,+,TTCATTGTACCATGTATGTGCTGCTACGTCCCTTTGAGAATGTGCCATCG,"Exon (Spred1-201/Spred1, exon 7 of 7)",2,117121374,117182279,60906,1,Spred1-201,56474,Spred1-201;Spred1-202,Spred1;Spred1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,6,114715,ENSMUSG00000027351,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2501,cg09219207,-0.00000249,0.00000263,-0.946838516,0.34445853,loss,ns,0.0000141,0.00000447,3.153126435,0.001773464,pos,ns,0.003861927,0.001309206,2.949823139,0.00342165,pos,ns,2.465764369,-0.00012261,0.000045,-2.72324468,0.006830696,neg,ns,0.948178097,Anxa1,Anxa1_Intron,19,20035356,20035405,20035404,20035405,50,+,TCCTTTGTTGGTGCTTTTGAACTCCCTGGTCGTGGGCTACAAAGAGTCCG,"Intron (Gm3728-201/Gm3728-201, intron 1 of 3)",19,20373556,20375587,2032,2,Anxa1-202,340182,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,8,16952,ENSMUSG00000024659,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19959,cg07933997,0.00000749,0.0000044,1.703921961,0.089397747,gain,ns,-0.0000235,0.00000747,-3.15312024,0.0017735,neg,ns,0.007885501,0.002187589,3.604654317,0.000364064,pos,ns,3.438822386,-0.000328096,0.0000752,-4.361177659,0.0000176,neg,ns,0.919758162,Clpb,Clpb_Intron,7,101762590,101762639,101762638,101762639,50,-,TGTATGTGGCGCCTGAGGGAGCTGCACAGTGACACTCTGGATTCCAACCG,"Intron (Clpb-201/Clpb, intron 6 of 15)",7,101663633,101790168,126536,1,Clpb-201,98957,Clpb-201;Clpb-202;Clpb-211;Clpb-208;Clpb-207;Clpb-204;Clpb-209,Clpb;Clpb;Clpb;Clpb;Clpb;Clpb;Clpb,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,21,21,20480,ENSMUSG00000001829,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25902,cg05096292,0.0000594,0.00000848,6.998808482,1.60E-11,gain,yes,-0.0000454,0.0000144,-3.152834275,0.001775184,neg,ns,0.029483654,0.004221298,6.984498793,1.75E-11,pos,yes,10.75716483,-0.00013465,0.00014517,-0.927534767,0.354370535,neg,ns,0.65102667,Tsc22d3,Tsc22d3_Intron,X,140573051,140573100,140573099,140573100,50,-,AAGCATTTTTCAAGCACCTACTGTGCATGGAGCACTGTCCCAGACACTCG,"Intron (Tsc22d3-203/Tsc22d3, intron 2 of 3)",20,140540262,140600659,60398,2,Tsc22d3-203,27559,Tsc22d3-203,Tsc22d3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,4,14605,ENSMUSG00000031431,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23899,cg24595298,-0.00000142,0.00000399,-0.355803821,0.722229486,loss,ns,-0.0000214,0.00000678,-3.152457532,0.001777404,neg,ns,-0.004037093,0.00198575,-2.033031511,0.042901078,neg,ns,1.3675318,-0.00000325,0.0000683,-0.047648004,0.962027456,neg,ns,0.83694934,Csnk1d,Csnk1d_threeUTR,11,120963848,120963897,120963896,120963897,50,-,GAGAGTTCTCATCGGTGCACGACAGACTGAAGACCACTGGAAGCCACCCG,3' UTR,11,120958990,120991330,32341,2,Csnk1d-209,27433,Csnk1d-209;Csnk1d-202;Csnk1d-201;Csnk1d-203;Csnk1d-205;Csnk1d-204;Slc16a3-202;Slc16a3-208,Csnk1d;Csnk1d;Csnk1d;Csnk1d;Csnk1d;Csnk1d;Slc16a3;Slc16a3,0;0;0;0;0;4164;14781;14767,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,5,104318,ENSMUSG00000025162,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4602,cg07425443,-0.000137579,0.0000113,-12.18215301,3.68E-28,loss,yes,-0.0000605,0.0000192,-3.151525014,0.00178291,neg,ns,0.018583784,0.005620885,3.306202395,0.001056745,pos,ns,2.976029781,-0.001311833,0.000193302,-6.786450591,5.85E-11,neg,yes,0.440995136,Odf2,Odf2_Exon,2,29922335,29922384,29922335,29922336,50,-,CGACCTCACAGCCATCATATCAGACCTGCGCAGCCGGGTAAGGGACTGGC,"Exon (Odf2-211/Odf2, exon 16 of 16)",2,29889720,29922539,32820,1,Odf2-211,32615,Odf2-211;Odf2-208;Odf2-205;Odf2-204;Odf2-225;Odf2-206;Odf2-203;Odf2-202;Odf2-201;Odf2-207;Odf2-210;Odf2-209;Odf2-222;Odf2-221,Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2,0;0;0;0;0;0;0;0;0;0;0;0;7941;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,8,18286,ENSMUSG00000026790,conserved gene and region,2,29922320,29922481,162,*,162,10,0.617283951,0.649038462,0.061728395,0.0000055,CpGisland,TRUE,U10,Tr-S
22023,cg02237910,-0.00000427,0.0000032,-1.334623855,0.182978897,loss,ns,0.0000171,0.00000543,3.150911887,0.00178654,pos,ns,0.001742552,0.001591784,1.094716805,0.274490547,pos,ns,0.561472607,-0.0000245,0.0000547,-0.44723655,0.655016596,neg,ns,0.942816602,Elavl4,Elavl4_threeUTR,4,110205464,110205513,110205512,110205513,50,+,TTTAAAACACACATCTTGATCTCTAAAAAGTTACCAGTGCAGTATGAACG,3' UTR,4,110203722,110287527,83806,2,Elavl4-204,82014,Elavl4-204;Elavl4-201;Elavl4-203;Elavl4-202;Elavl4-205;Elavl4-206;Elavl4-207;Elavl4-211,Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,8,36,15572,ENSMUSG00000028546,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21429,cg00122769,-0.00000834,0.00000374,-2.227946834,0.026601346,loss,ns,-0.00002,0.00000636,-3.15083931,0.00178697,neg,ns,0.005366232,0.001862689,2.880905837,0.00424181,pos,ns,2.372448744,-0.000161127,0.0000641,-2.515335038,0.012397373,neg,ns,0.884608904,Rbm5,Rbm5_threeUTR,9,107740978,107741027,107741026,107741027,50,-,CAGTGAACCGGGCAAACATGGCTTTCCGGACAGCATCTTTGTAGGAATCG,3' UTR,9,107740371,107770996,30626,2,Rbm5-214,29969,Rbm5-214;Rbm5-219;Rbm5-224;Rbm5-210;Rbm5-201;Rbm5-205;Rbm5-207;Rbm5-209;Rbm5-215,Rbm5;Rbm5;Rbm5;Rbm5;Rbm5;Rbm5;Rbm5;Rbm5;Rbm5,0;0;0;0;0;0;3207;8995;8884,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,11,83486,ENSMUSG00000032580,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3467,cg03724838,-0.00000797,0.00000567,-1.406113469,0.16069198,loss,ns,0.0000303,0.00000963,3.150628008,0.001788222,pos,ns,0.003983083,0.002820582,1.412149591,0.158908952,pos,ns,0.798851637,-0.0000627,0.000097,-0.646651336,0.518336101,neg,ns,0.936653006,Bcl11a,Bcl11a_Exon,11,24163286,24163335,24163286,24163287,50,+,CGGGTTGGTATCCCTTCAGGACTAGGTGCAGAATGTCCTTCCCAGCCACC,"Exon (Bcl11a-201/Bcl11a, exon 4 of 5)",11,24078056,24173194,95139,1,Bcl11a-201,85230,Bcl11a-201;Bcl11a-203;Bcl11a-202;Bcl11a-204;Bcl11a-206,Bcl11a;Bcl11a;Bcl11a;Bcl11a;Bcl11a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,51,98,14025,ENSMUSG00000000861,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19418,cg23764151,0.000107373,0.0000108,9.928286049,2.37E-20,gain,yes,-0.0000579,0.0000184,-3.150167743,0.001790953,neg,ns,0.024295463,0.005382687,4.513631002,0.00000906,pos,ns,5.042808347,-0.000648915,0.00018511,-3.505563011,0.000522869,neg,ns,0.360432869,Gm12689,Gm12689_Intergenic_upstream,4,99282230,99282279,99282278,99282279,50,-,ACTGCAGGGCATCCGAGTTGTAACAAGAACAAGATGAGCTTGTGGCCTCG,Distal Intergenic,4,99295900,99297258,1359,1,Gm12689-201,-13670,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,26,100137011,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12686,cg21684161,0.000108883,0.0000216,5.050532624,0.000000753,gain,yes,0.000115358,0.0000366,3.149682342,0.001793838,pos,ns,0.044360422,0.01073,4.134242649,0.0000459,pos,ns,4.338272726,-0.000887179,0.000369004,-2.404253241,0.016791981,neg,ns,0.269175118,Slitrk2,Slitrk2_Exon,X,66653968,66654017,66653968,66653969,50,+,CGCAAAACTGCCAAAGACATTTGCAAGATCCGCTGTCTGTGCGAAGAAAA,"Exon (Slitrk2-202/Slitrk2, exon 3 of 3)",20,66649318,66661393,12076,1,Slitrk2-202,4650,Slitrk2-202;Slitrk2-201,Slitrk2;Slitrk2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,245450,ENSMUSG00000036790,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12158,cg06633079,0.0000349,0.0000252,1.384632914,0.167160514,gain,ns,0.00013483,0.0000428,3.148829158,0.001798918,pos,ns,0.029466807,0.012544584,2.348966494,0.019453154,pos,ns,1.711009966,-0.00054294,0.000431407,-1.258533078,0.20914602,neg,ns,0.732948272,Skor1,Skor1_Promoter,9,63152148,63152197,63152148,63152149,50,+,CGTAGCGCTTACTGTGTAAACACGTATTCTGAATTAAAAATCAGATGTAA,Promoter (3-4kb),9,63138170,63148961,10792,2,Skor1-202,-3187,Skor1-202,Skor1,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,6,15,207667,ENSMUSG00000022245,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
22566,cg09213135,-0.000101915,0.0000119,-8.555424243,5.50E-16,loss,yes,0.0000637,0.0000202,3.147574575,0.001806413,pos,ns,-0.00051615,0.005928894,-0.087056674,0.930682669,neg,ns,0.031198373,0.000223111,0.000203894,1.09424835,0.27469557,pos,ns,0.797676336,Rpl19-ps10,Rpl19-ps10_Promoter,7,115170216,115170265,115170264,115170265,50,-,CAGTCTCTTTTTCAGATGTTATTGGAAAGAACATGTAATTTATAACCACG,Promoter (1-2kb),7,115172056,115172385,330,1,Rpl19-ps10-201,-1840,Rpl19-ps10-201,Rpl19-ps10,-1791,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,29,668472,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1613,cg15580396,-0.0000463,0.00000844,-5.486915341,8.51E-08,loss,yes,0.0000451,0.0000143,3.147443479,0.001807198,pos,ns,-0.004528009,0.004200811,-1.077889235,0.28192122,neg,ns,0.549872235,-0.000113812,0.000144466,-0.787812482,0.431408357,neg,ns,0.857796142,Zfp521,Zfp521_Intron,18,13850481,13850530,13850481,13850482,50,+,CGCCTGACTTTTCTCCAAGCAGACAGGAATGCCCATGATTCAGCAGCCTG,"Intron (Zfp521-201/Zfp521, intron 3 of 7)",18,13687013,13972787,285775,2,Zfp521-201,122257,Zfp521-201;Zfp521-204;Zfp521-203;Zfp521-207;Zfp521-202,Zfp521;Zfp521;Zfp521;Zfp521;Zfp521,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,81,225207,ENSMUSG00000024420,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20636,cg01743031,-0.00000549,0.00000618,-0.888785775,0.374807349,loss,ns,0.0000331,0.0000105,3.147350112,0.001807757,pos,ns,0.007291992,0.003077105,2.369757163,0.018411835,pos,ns,1.734902916,-0.000166045,0.000105821,-1.56910904,0.117642657,neg,ns,0.834654532,Pou4f1,Pou4f1_Intergenic_downstream,14,104208537,104208586,104208537,104208538,50,+,CGACAGCCGCAGCTGGCTGGAGCCAGTTTATGTATCCAGTCTCTCAAGAC,Distal Intergenic,14,104463973,104465365,1393,2,Pou4f1-202,256779,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,31,18996,ENSMUSG00000048349,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5311,cg13021533,0.0000254,0.00000725,3.505874102,0.000522282,gain,ns,0.0000387,0.0000123,3.147281025,0.001808171,pos,ns,0.0223421,0.003606271,6.195346071,1.85E-09,pos,ns,8.733359073,-0.000498177,0.000124019,-4.016929705,0.000074,neg,ns,0.890350788,Ranbp17,Ranbp17_Intron,11,33400508,33400557,33400508,33400509,50,-,CGTTGTCTTGAAAACTAAATGTGAAGATGATCATAAACAGAATTTAAACT,"Intron (Ranbp17-202/Ranbp17, intron 14 of 27)",11,33211795,33513746,301952,2,Ranbp17-202,113189,Ranbp17-202;Ranbp17-206;Ranbp17-203,Ranbp17;Ranbp17;Ranbp17,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,31,66011,ENSMUSG00000040594,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12482,cg26931215,0.00000372,0.00000978,0.380266128,0.70400829,gain,ns,0.0000523,0.0000166,3.147194375,0.00180869,pos,ns,0.012449218,0.004867448,2.557647944,0.011013827,pos,ns,1.958061735,0.0000686,0.000167391,0.409769168,0.682258297,pos,ns,0.362025014,Megf11,Megf11_Intron,9,64543359,64543408,64543407,64543408,50,+,TGCGTGATAAGAAATTGCCAGGCACTTTCTAATTACAATTATCATCATCG,"Intron (Megf11-202/Megf11, intron 4 of 22)",9,64385626,64700975,315350,1,Megf11-202,157733,Megf11-202;Megf11-203;Megf11-210;Megf11-207;Megf11-201;Megf11-205;Megf11-206,Megf11;Megf11;Megf11;Megf11;Megf11;Megf11;Megf11,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,7,214058,ENSMUSG00000036466,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10325,cg02505036,-0.0000166,0.0000075,-2.210875459,0.027774199,loss,ns,0.0000401,0.0000127,3.146936426,0.001810236,pos,ns,0.004689356,0.00373211,1.256489233,0.209884644,pos,ns,0.678019334,-0.000280718,0.000128347,-2.187181036,0.029476179,neg,ns,0.771344162,Hprt,Hprt_Exon,X,53049406,53049455,53049454,53049455,50,-,TCCCAGACCTTTCAGTTATCAATCTGTCACAAGTGCACACTGGTATCTCG,"Exon (Mir542-201/Mir542-201, exon 1 of 1)",20,52988137,53021659,33523,1,Hprt-201,61318,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,15452,ENSMUSG00000025630,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27340,cg16293952,-0.0000472,0.00000918,-5.148109572,0.000000468,loss,yes,0.0000491,0.0000156,3.146606643,0.001812215,pos,ns,0.012177878,0.004566854,2.666579248,0.008064873,pos,ns,2.093402474,-0.000193023,0.000157054,-1.229024733,0.219994631,neg,ns,0.518940201,Cdh22,Cdh22_Intron,2,165114890,165114939,165114890,165114891,50,+,CGTTTGTGGGCAATTAGGCAGAACTTTGTTTGCACTGCCTCGGAAAATGA,"Intron (Cdh22-201/Cdh22, intron 11 of 11)",2,165111507,165234853,123347,2,Cdh22-201,119914,Cdh22-201;Cdh22-202,Cdh22;Cdh22,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,23,104010,ENSMUSG00000053166,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
21266,cg09072115,0.0000268,0.0000034,7.876978334,5.71E-14,gain,yes,-0.0000182,0.00000577,-3.145789031,0.001817129,neg,ns,-0.004913424,0.001691124,-2.905419251,0.003931509,neg,ns,2.405440728,0.000152345,0.0000582,2.619525213,0.009238385,pos,ns,0.85163197,Ssbp3,Ssbp3_Exon,4,107027176,107027225,107027224,107027225,50,-,TGCTGTGATCTATAACCTGCCTCTACTGTCTGGCCTCACAGGGTCCTCCG,"Exon (Ssbp3-216/Ssbp3, exon 6 of 9)",4,106910701,107031069,120369,1,Ssbp3-216,116475,Ssbp3-216;Ssbp3-201;Ssbp3-215;Ssbp3-202;Ssbp3-203;Ssbp3-213;Ssbp3-214;Ssbp3-211;Ssbp3-212;Ssbp3-204;Ssbp3-206;Ssbp3-210;Ssbp3-205,Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3,0;0;0;0;0;0;0;0;0;0;0;0;-3607,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,18,72475,ENSMUSG00000061887,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9528,cg26285771,-0.0000392,0.0000163,-2.405508726,0.016735475,loss,ns,-0.0000871,0.0000277,-3.145354081,0.001819749,neg,ns,0.04884187,0.008114553,6.019046543,4.95E-09,pos,ns,8.3053842,-0.001914944,0.000279059,-6.86215348,3.70E-11,neg,yes,0.498186163,Naa30,Naa30_Exon,14,49178084,49178133,49178084,49178085,50,-,CGTTTGCAAGTTGGATATGCACAAAAAGATGTTCCGCAGAGGTTATATAG,"Exon (Naa30-205/Naa30, exon 3 of 5)",14,49172226,49190885,18660,1,Naa30-205,5858,Naa30-205;Naa30-201;Naa30-203;Naa30-204;Naa30-202,Naa30;Naa30;Naa30;Naa30;Naa30,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,7,70646,ENSMUSG00000036282,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17044,cg14702549,-0.0000102,0.0000212,-0.483150692,0.629329789,loss,ns,0.000113091,0.000036,3.145300402,0.001820072,pos,ns,0.001925813,0.010533785,0.182822504,0.855056796,pos,ns,0.068005037,-0.000137545,0.000362256,-0.379690081,0.70443546,neg,ns,0.654648172,Gm28877,Gm28877_Intergenic_upstream,9,88073699,88073748,88073699,88073700,50,-,CGGTATTGATTAAACAATGTCTGGAGCTGGCAAACATTATTAATATATAG,Distal Intergenic,9,88039089,88039692,604,2,Gm28877-201,-34056,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,7,102639108,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5195,cg24662930,-0.0000286,0.00000919,-3.112585996,0.002027413,loss,ns,0.0000491,0.0000156,3.144343592,0.001825848,pos,ns,-0.00094641,0.004573725,-0.206923116,0.836205752,neg,ns,0.077686849,-0.000109349,0.00015729,-0.695206542,0.487446648,neg,ns,0.841504265,Gm13852,Gm13852_Intergenic_downstream,6,32703699,32703748,32703747,32703748,50,+,GGTTTAGCATGCACAGGCAGTTTGATGCTGTCTTGATGGCCTTTTAAGCG,Distal Intergenic,6,32610119,32610360,242,1,Gm13852-201,93580,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26742,cg18370228,0.0000627,0.00000592,10.58988,1.43E-22,gain,yes,-0.0000316,0.0000101,-3.143172317,0.001832941,neg,ns,0.011331704,0.002947687,3.844269656,0.000146725,pos,ns,3.833497307,-0.000513302,0.000101371,-5.063611039,0.000000707,neg,yes,0.486197041,Huwe1,Huwe1_Exon,X,151923557,151923606,151923605,151923606,50,-,AAATGGTACGTGAGGGTCAAAGGGCGCGGAGACAGCAACAAGCAGCAACG,"Exon (Huwe1-201/Huwe1, exon 72 of 83)",20,151803327,151935417,132091,1,Huwe1-201,120230,Huwe1-201;Huwe1-202;Huwe1-209;Huwe1-205;Huwe1-213,Huwe1;Huwe1;Huwe1;Huwe1;Huwe1,0;0;2275;0;-652,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,22,28,59026,ENSMUSG00000025261,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5785,cg04690108,0.000154997,0.00000838,18.50662015,4.97E-52,gain,yes,-0.0000447,0.0000142,-3.14201239,0.00183999,neg,ns,0.013679784,0.00416844,3.281751813,0.001149363,pos,ns,2.939542794,-0.0000204,0.000143352,-0.142479848,0.886793554,neg,ns,0.609161329,Sox2,Sox2_Intergenic_downstream,3,34747740,34747789,34747788,34747789,50,-,ACAAAGCCCCTGGGAGAACTCGGGCAAGCTGAACACCTTGGTCAAACACG,Distal Intergenic,3,34650405,34652461,2057,1,Sox2-201,97384,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,62,20674,ENSMUSG00000074637,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
17234,cg19510557,0.0000785,0.00000802,9.787463148,6.90E-20,gain,yes,-0.0000428,0.0000136,-3.141990469,0.001840123,neg,ns,0.003571572,0.003990372,0.895047311,0.371456219,pos,ns,0.430092367,0.000104177,0.000137229,0.759148257,0.44834072,pos,ns,0.201479137,Nog,Nog_Intergenic_downstream,11,89300227,89300276,89300227,89300228,50,-,CGCCCCCAGGGTAGGTGTGAAAGACACGTGTCCCCATTGTGAAGGGCCTG,Distal Intergenic,11,89300638,89302332,1695,2,Nog-201,2105,Nog-201,Nog,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,36,18121,ENSMUSG00000048616,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
7315,cg22377379,-0.00000352,0.0000019,-1.845695468,0.065889834,loss,ns,0.0000102,0.00000324,3.141008072,0.001846113,pos,ns,0.0019304,0.000948088,2.036098009,0.042590314,pos,ns,1.370689158,-0.0000923,0.0000326,-2.83140647,0.004937401,neg,ns,0.953929776,Stag2,Stag2_Exon,X,42266454,42266503,42266454,42266455,50,+,CGAACTAATCTTCAGCATGCCATGTAAGTGAGAGTGCCTTATTGTCTGAG,"Exon (Stag2-203/Stag2, exon 31 of 34)",20,42149317,42277185,127869,1,Stag2-203,117137,Stag2-203;Stag2-202;Stag2-201,Stag2;Stag2;Stag2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,7,20843,ENSMUSG00000025862,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3815,cg04343297,0.0000259,0.00000786,3.300538112,0.001077562,gain,ns,0.0000419,0.0000134,3.139868315,0.001853086,pos,ns,0.007859394,0.003912028,2.009033114,0.045400273,pos,ns,1.342941533,0.00000737,0.000134534,0.054747335,0.956375024,pos,ns,0.801812851,Celf4,Celf4_Exon,18,25504173,25504222,25504221,25504222,50,+,ATGGCCATGGGGTTGAACATGCCCATCTGGCCAGCCATCTGCTGCATTCG,"Exon (Celf4-202/Celf4, exon 6 of 13)",18,25477632,25753983,276352,2,Celf4-202,249761,Celf4-202;Celf4-201;Celf4-203;Celf4-207;Celf4-206;Celf4-210;Celf4-209,Celf4;Celf4;Celf4;Celf4;Celf4;Celf4;Celf4,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,31,59,108013,ENSMUSG00000024268,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
10890,cg10876801,0.000122656,0.0000176,6.98226224,1.77E-11,gain,yes,-0.0000937,0.0000298,-3.139709074,0.001854062,neg,ns,0.082774877,0.008743163,9.467383619,7.58E-19,pos,yes,18.1203479,-0.001458756,0.000300677,-4.851577418,0.00000194,neg,ns,0.737387603,Tcf7l2,Tcf7l2_Intron,19,55748054,55748103,55748102,55748103,50,-,CAGGCTTTATTTACAGCCCATAACACTTATGAATGTTAAGATATTTGACG,"Intron (Tcf7l2-213/Tcf7l2, intron 3 of 13)",19,55741820,55933229,191410,1,Tcf7l2-213,6234,Tcf7l2-213;Tcf7l2-201;Tcf7l2-208;Tcf7l2-211;Tcf7l2-212;Tcf7l2-206;Tcf7l2-204;Tcf7l2-205;Tcf7l2-222;Tcf7l2-215;Tcf7l2-214;Tcf7l2-207;Tcf7l2-202;Tcf7l2-209;Tcf7l2-210;Tcf7l2-217,Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,55,88,21416,ENSMUSG00000024985,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17573,cg07520269,0.0000124,0.0000225,0.550106142,0.582642708,gain,ns,0.000120177,0.0000383,3.139650953,0.001854418,pos,ns,0.044214785,0.011213886,3.942860321,0.0000996,pos,ns,4.001804821,-0.000887746,0.000385645,-2.301980337,0.021998851,neg,ns,0.303815442,Dlg2,Dlg2_fiveUTR,7,91090980,91091029,91090980,91090981,50,+,CGGTCCATATGCTCCTTATTTACTGCAATGTTCTTTGCATGTTACTGTGC,5' UTR,7,90477231,92449247,1972017,1,Dlg2-217,613749,Dlg2-217;Dlg2-204;Dlg2-209;Dlg2-201,Dlg2;Dlg2;Dlg2;Dlg2,0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,21,23859,ENSMUSG00000052572,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7844,cg17899961,-0.0000215,0.00000796,-2.704574122,0.007217095,loss,ns,0.0000424,0.0000135,3.13956669,0.001854935,pos,ns,0.004260832,0.003960924,1.075716622,0.282890497,pos,ns,0.548381642,-0.000109401,0.000136216,-0.803144222,0.422506732,neg,ns,0.175845449,Gm12455,Gm12455_Intergenic_downstream,4,44508721,44508770,44508769,44508770,50,+,GAAGTTCACATATTTGGGCATTAGTGCAGCTATTAGTTTAACAAGCTTCG,Distal Intergenic,4,44382922,44383337,416,1,Gm12455-201,125799,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,15,15,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9616,cg01683319,-0.00000231,0.0000116,-0.198241123,0.842986353,loss,ns,0.0000621,0.0000198,3.139529859,0.001855161,pos,ns,0.009180452,0.005792508,1.584883725,0.114012299,pos,ns,0.943048297,-0.000464262,0.000199204,-2.330589389,0.020416277,neg,ns,0.686078734,Grik2,Grik2_Exon,10,49535448,49535497,49535448,49535449,50,-,CGAAGATTATACCTTGATGGAGCTTTGATGAGCTCTTGCAAACGAATGAG,"Exon (Grik2-207/Grik2, exon 5 of 17)",10,49094833,49788766,693934,2,Grik2-207,253269,Grik2-207;Grik2-202;Grik2-205;Grik2-204;Grik2-201;Grik2-206;Grik2-210,Grik2;Grik2;Grik2;Grik2;Grik2;Grik2;Grik2,0;0;0;0;0;-95;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,12,14806,ENSMUSG00000056073,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27353,cg09601867,0.0000572,0.00000704,8.126285197,1.07E-14,gain,yes,-0.0000375,0.000012,-3.139062969,0.001858027,neg,ns,0.006753765,0.003503865,1.927518599,0.054828495,pos,ns,1.260993676,-0.000200803,0.000120498,-1.66644532,0.096634771,neg,ns,0.157970792,Cdh22,Cdh22_Intron,2,165211432,165211481,165211432,165211433,50,+,CGAATTGGGTTCTTTTAATCAAATGTTTGGCAGGTGTATGAATTATTTAT,"Intron (Cdh22-201/Cdh22, intron 1 of 11)",2,165111507,165234853,123347,2,Cdh22-201,23372,Cdh22-201,Cdh22,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,23,104010,ENSMUSG00000053166,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
6124,cg11249940,-0.00000999,0.0000126,-0.793423431,0.428138028,loss,ns,0.0000671,0.0000214,3.138970515,0.001858595,pos,ns,0.011198538,0.006267098,1.786877663,0.07493426,pos,ns,1.125319576,-0.000279763,0.000215525,-1.29805365,0.195233832,neg,ns,0.424817161,Tenm2,Tenm2_Exon,11,36106716,36106765,36106764,36106765,50,-,CACCTCCCTCATTATCCTTGTTATCAGCACAGGAAGTTTCCATGGCAACG,"Exon (Tenm2-202/Tenm2, exon 15 of 31)",11,36006656,37235882,1229227,2,Tenm2-202,1129117,Tenm2-202;Tenm2-208;Tenm2-201,Tenm2;Tenm2;Tenm2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,21,84,23964,ENSMUSG00000049336,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16311,cg12689672,-0.0000459,0.0000151,-3.032606935,0.002629312,loss,ns,0.0000808,0.0000257,3.138583836,0.001860973,pos,ns,0.018158894,0.007538327,2.408875916,0.016584753,pos,ns,1.780291002,-0.000261998,0.000259242,-1.010629313,0.312982043,neg,ns,0.654976227,Mrm1,Mrm1_Intergenic_downstream,11,84729068,84729117,84729068,84729069,50,-,CGTTATAGGCCATTAGGCTAAAGTAATATGTATGAGGAGTCACTTTTCCC,Distal Intergenic,11,84814743,84815390,648,2,Mrm1-203,86322,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,37,42,217038,ENSMUSG00000018405,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21321,cg16662111,0.00000374,0.00000314,1.191281243,0.234454479,gain,ns,-0.0000168,0.00000534,-3.138144156,0.001863679,neg,ns,-0.001602211,0.001563841,-1.024535655,0.306381143,neg,ns,0.513737967,0.0000287,0.0000538,0.534363129,0.593473335,pos,ns,0.874355786,Nfat5,Nfat5_threeUTR,8,107339027,107339076,107339075,107339076,50,+,ACAGTCTTGTACATCTCACCACCACCTGAGGACTTGCTGGATAACAGTCG,3' UTR,8,107293470,107372227,78758,1,Nfat5-213,45557,Nfat5-213;Nfat5-214;Nfat5-206;Nfat5-211;Nfat5-203;Nfat5-201;Nfat5-209;Nfat5-205;Nfat5-202;Nfat5-207,Nfat5;Nfat5;Nfat5;Nfat5;Nfat5;Nfat5;Nfat5;Nfat5;Nfat5;Nfat5,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,13,17,54446,ENSMUSG00000003847,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26530,cg24221221,0.0000487,0.00000844,5.767945958,1.94E-08,gain,yes,0.000045,0.0000143,3.137984401,0.001864664,pos,ns,0.018427718,0.004199773,4.387789491,0.0000157,pos,ns,4.803639605,-0.000296218,0.00014443,-2.050944169,0.041112697,neg,ns,0.453898275,Casz1,Casz1_Intron,4,148885981,148886030,148885981,148885982,50,-,CGGGCTCCTGACAGCTCCTCAATACAGGAAGGAGGCCAAACAGAATATTT,"Intron (Casz1-201/Casz1, intron 2 of 15)",4,148804429,148945129,140701,1,Casz1-201,81552,Casz1-201;Casz1-202;Casz1-205,Casz1;Casz1;Casz1,0;0;-3351,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,94,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4512,cg11438204,0.0000114,0.00000385,2.961030349,0.003302905,gain,ns,-0.0000205,0.00000654,-3.137700979,0.001866411,neg,ns,0.002780759,0.001915687,1.451572615,0.147631714,pos,ns,0.830820338,-0.0000762,0.0000659,-1.157132789,0.248108947,neg,ns,0.84330172,Calu,Calu_Exon,6,29361318,29361367,29361318,29361319,50,-,CGACAAGGACGGGTTTGTCACTGTGGATGAGCTCAAAGACTGGATTAAAT,"Exon (Calu-208/Calu, exon 3 of 5)",6,29348069,29374503,26435,1,Calu-207,13249,Calu-207;Calu-208;Calu-206;Calu-201;Calu-202;Calu-209;Calu-204,Calu;Calu;Calu;Calu;Calu;Calu;Calu,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,9,12321,ENSMUSG00000029767,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8514,cg04547234,0.0000388,0.0000115,3.368540045,0.000851068,gain,ns,0.0000614,0.0000196,3.137514479,0.001867562,pos,ns,0.00958033,0.005737886,1.669662126,0.095995656,pos,ns,1.01774842,-0.0000271,0.000197325,-0.1371698,0.890985626,neg,ns,0.579851083,Lbx1,Lbx1_Intergenic_upstream,19,45272431,45272480,45272431,45272432,50,+,CGACTGAGTAATCTAATCTATAAGTTAAGCGTTCCACACAGCAGCGATTT,Distal Intergenic,19,45232684,45235812,3129,2,Lbx1-201,-36619,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,15,50,16814,ENSMUSG00000025216,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21298,cg00345769,-0.00000622,0.00000623,-0.999055819,0.318546836,loss,ns,-0.0000332,0.0000106,-3.137272382,0.001869057,neg,ns,0.000683809,0.003099488,0.220620179,0.825533417,pos,ns,0.083265342,-0.000047,0.000106591,-0.440990425,0.659527318,neg,ns,0.886486361,Tmem59,Tmem59_threeUTR,4,107190618,107190667,107190666,107190667,50,+,ACAGAGCTTCATAACCTCTTCATGGACTTTTTATCTTCAAGCCGATGACG,3' UTR,4,107178399,107200996,22598,1,Tmem59-201,12219,Tmem59-201;Tmem59-204;Tmem59-202;Tmem59-205;Tmem59-206;Tmem59-203,Tmem59;Tmem59;Tmem59;Tmem59;Tmem59;Tmem59,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,3,56374,ENSMUSG00000028618,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22082,cg03969757,-0.00000112,0.00000291,-0.383377017,0.701703018,loss,ns,-0.0000155,0.00000495,-3.137179199,0.001869633,neg,ns,0.004517587,0.001449675,3.116275972,0.002002982,pos,ns,2.698322976,-0.00000188,0.0000499,-0.037640648,0.969998425,neg,ns,0.932420032,Ep400,Ep400_Exon,5,110753849,110753898,110753849,110753850,50,-,CGGAAGCTGGGTTGCTATAGCAACGGGAGTCCCAGTCTGCCCATCCTTTC,"Exon (Ep400-203/Ep400, exon 3 of 52)",5,110664373,110770527,106155,2,Ep400-201,16629,Ep400-201;Ep400-203;Ep400-204;Ep400-210;Ep400-202;Ep400-211,Ep400;Ep400;Ep400;Ep400;Ep400;Ep400,0;0;0;0;0;16819,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,75560,ENSMUSG00000029505,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18767,cg16143691,0.000225606,0.0000198,11.41434129,1.99E-25,gain,yes,-0.000105318,0.0000336,-3.136487437,0.001873911,neg,ns,0.061808551,0.009837312,6.283073145,1.12E-09,pos,ns,8.94969531,-0.000598749,0.000338304,-1.769854323,0.077734366,neg,ns,0.57475074,Npepps,Npepps_threeUTR,11,97240948,97240997,97240996,97240997,50,-,AACCATTGATGGGCAAGTTCATGTCCCACAACCAGAGCAACCCACTGGCG,3' UTR,11,97205842,97280486,74645,2,Npepps-215,39489,Npepps-215;Npepps-219;Npepps-201;Npepps-214;Npepps-213;Npepps-208;Npepps-211;Npepps-209;Npepps-205;Npepps-216;Npepps-210,Npepps;Npepps;Npepps;Npepps;Npepps;Npepps;Npepps;Npepps;Npepps;Npepps;Npepps,0;0;0;0;0;0;0;0;0;0;39473,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,5,19155,ENSMUSG00000001441,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25757,cg12316900,0.00000218,0.00000448,0.486294151,0.627102215,gain,ns,-0.0000239,0.00000761,-3.136456,0.001874106,neg,ns,-0.003388322,0.002228138,-1.520696535,0.129355301,neg,ns,0.888215769,-0.000192522,0.0000766,-2.512501564,0.012495323,neg,ns,0.90808383,Ubr4,Ubr4_Exon,4,139441265,139441314,139441265,139441266,50,-,CGCAGGAACCCTCTCTGACACCACAGCATCAGGTAACTGTCCACAGCAAG,"Exon (Ubr4-201/Ubr4, exon 58 of 106)",4,139352609,139469763,117155,1,Ubr4-210,88656,Ubr4-210;Ubr4-212;Ubr4-201;Ubr4-203;Ubr4-202,Ubr4;Ubr4;Ubr4;Ubr4;Ubr4,0;0;0;0;6255,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,10,69116,ENSMUSG00000066036,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
165,cg21885075,-0.0000126,0.00000722,-1.742137981,0.082476076,loss,ns,0.0000385,0.0000123,3.136173283,0.001875857,pos,ns,0.007659735,0.003592593,2.132090577,0.03378525,pos,ns,1.471272867,-0.000260639,0.000123549,-2.10959983,0.035694181,neg,ns,0.865208953,Gria4,Gria4_Exon,9,4432847,4432896,4432895,4432896,50,+,CTTGTTCATTCAGTTTTAAAACTGCGAGGTTAACAGCATTTCTTGAAACG,"Exon (Gria4-204/Gria4, exon 14 of 16)",9,4417896,4796142,378247,2,Gria4-202,363246,Gria4-202;Gria4-204;Gria4-201,Gria4;Gria4;Gria4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,16,18,14802,ENSMUSG00000025892,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21697,cg20219431,0.000216283,0.0000211,10.2372045,2.22E-21,gain,yes,-0.000112561,0.0000359,-3.136080768,0.001876431,neg,ns,0.077884237,0.010515202,7.406822426,1.23E-12,pos,yes,11.90889375,-0.00054292,0.000361617,-1.501367932,0.134278278,neg,ns,0.489231579,Zfhx3,Zfhx3_Intron,8,108897134,108897183,108897182,108897183,50,-,AATGCCATGGGCAATTTGCATATTGATCATAAACAACTTTGAAGGCACCG,"Intron (Zfhx3-204/Zfhx3, intron 10 of 15)",8,107942644,108961630,1018987,1,Zfhx3-204,954490,Zfhx3-204;Zfhx3-201,Zfhx3;Zfhx3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,114,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15902,cg16280875,-0.00000798,0.00000495,-1.613088824,0.10774269,loss,ns,-0.0000264,0.00000841,-3.135903877,0.001877528,neg,ns,-0.000204367,0.002463393,-0.082961703,0.933935534,neg,ns,0.0296831,-0.000295344,0.0000847,-3.48628653,0.000560488,neg,ns,0.762421032,Numb,Numb_threeUTR,12,83801087,83801136,83801087,83801088,50,+,CGTTTAAAGGGTGACATCTTCTGGCTAAGAGCAGGAAAACCTCGGAAAGA,3' UTR,12,83794034,83921934,127901,2,Numb-204,120798,Numb-204;Numb-203;Numb-202;Numb-201;Numb-207;Numb-210;Numb-211,Numb;Numb;Numb;Numb;Numb;Numb;Numb,0;0;0;0;0;0;120731,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,18222,ENSMUSG00000021224,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6300,cg26567841,0.00000119,0.00000369,0.323694838,0.746387345,gain,ns,-0.0000196,0.00000626,-3.135746881,0.001878502,neg,ns,0.000164541,0.00183505,0.089665501,0.928610934,pos,ns,0.032166207,-0.00017599,0.0000631,-2.788743298,0.005618431,neg,ns,0.922117578,Stt3a,Stt3a_Exon,9,36746558,36746607,36746606,36746607,50,-,ACAGCTGAAAAGTACATGCTGGTCACACCATACATGATGATAAAAATCCG,"Exon (Stt3a-201/Stt3a, exon 11 of 18)",9,36729344,36767679,38336,2,Stt3a-201,21072,Stt3a-201;Stt3a-204;Stt3a-208,Stt3a;Stt3a;Stt3a,0;0;20992,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,16430,ENSMUSG00000032116,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5816,cg10419849,0.0000881,0.0000252,3.493930852,0.000545277,gain,ns,-0.00013432,0.0000428,-3.134694298,0.001885044,neg,ns,0.094709235,0.012553419,7.544497082,5.08E-13,pos,yes,12.29411231,-0.004127959,0.000431711,-9.561855393,3.75E-19,neg,yes,0.539568508,Tnks,Tnks_Intron,8,34890677,34890726,34890677,34890678,50,+,CGTTAGCCAGCTTGTGAAGGCAGCATCACCAGTGCCTTGGAGACGGGCAG,"Intron (Tnks-201/Tnks, intron 3 of 26)",8,34826460,34965690,139231,2,Tnks-201,74964,Tnks-201;Tnks-203,Tnks;Tnks,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,6,21951,ENSMUSG00000031529,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22599,cg11137703,-0.00000113,0.0000129,-0.087266276,0.930516201,loss,ns,0.0000689,0.000022,3.134298025,0.001887513,pos,ns,0.013024087,0.006435492,2.023790311,0.043849267,pos,ns,1.358037658,-0.000187746,0.000221316,-0.848316497,0.396916273,neg,ns,0.72482926,Otop3,Otop3_Exon,11,115344725,115344774,115344773,115344774,50,+,CCTGGATGTGGTGCTGCTAATGGGTGCTGCACTGGGCCAGATGGGCATCG,"Exon (Otop3-202/Otop3, exon 6 of 7)",11,115334731,115346927,12197,1,Otop3-202,9994,Hid1-201;Hid1-202;Hid1-206;Otop3-202;Otop3-201,Hid1;Hid1;Hid1;Otop3;Otop3,22945;22982;6229;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,69602,ENSMUSG00000018862,conserved gene and region,11,115344539,115344816,278,*,278,16,0.597122302,0.647170086,0.057553957,7.61E-09,CpGisland,TRUE,NA,NRS
27277,cg11399644,0.000144608,0.0000182,7.941699075,3.71E-14,gain,yes,-0.0000969,0.0000309,-3.132957594,0.001895885,neg,ns,0.002143736,0.009062649,0.236546286,0.813165019,pos,ns,0.089821312,-0.001018813,0.000311664,-3.268948282,0.001200817,neg,ns,0.731916871,Srsf6,Srsf6_threeUTR,2,162933039,162933088,162933039,162933040,50,+,CGTGTTTTGTGGCCAAACCACCACCAAAAACCTCACACTGTGATGTAAGT,3' UTR,2,162931528,162935208,3681,1,Srsf6-204,1511,Srsf6-204;Srsf6-203;Srsf6-201;Srsf6-202,Srsf6;Srsf6;Srsf6;Srsf6,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,4,67996,ENSMUSG00000016921,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3894,cg03278936,0.0000075,0.0000128,0.586768099,0.557786516,gain,ns,0.000068,0.0000217,3.132424039,0.001899227,pos,ns,0.021019114,0.006362963,3.303353138,0.001067169,pos,ns,2.971766738,-0.000538706,0.000218822,-2.461848857,0.014366355,neg,ns,0.555091716,Celf4,Celf4_Intron,18,25694165,25694214,25694165,25694166,50,-,CGGTGCTGAAGCCATTTCCATCCAGGCGGCTCTCCAAGACGAAATTTTTC,"Intron (Celf4-202/Celf4, intron 1 of 12)",18,25477632,25753983,276352,2,Celf4-202,59769,Celf4-202;Celf4-201;Celf4-203;Celf4-207;Celf4-206;Celf4-209;Celf4-205,Celf4;Celf4;Celf4;Celf4;Celf4;Celf4;Celf4,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,59,108013,ENSMUSG00000024268,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10948,cg07539019,0.00000302,0.00000156,1.937528351,0.053588855,gain,ns,-0.00000828,0.00000264,-3.13239803,0.00189939,neg,ns,0.004611207,0.000774824,5.951296873,7.19E-09,pos,ns,8.143357346,-0.000125398,0.0000266,-4.706034775,0.00000381,neg,ns,0.968462712,Scaper,Scaper_Intron,9,55902749,55902798,55902797,55902798,50,+,TATAGATGTACAGCTAAAATTACCAATTAGTTTACCAATTGGCTGCAACG,"Intron (Scaper-202/Scaper, intron 6 of 32)",9,55549879,55938101,388223,2,Scaper-202,35303,Scaper-202;Scaper-201;Scaper-204;Scaper-205,Scaper;Scaper;Scaper;Scaper,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,3,244891,ENSMUSG00000034007,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25553,cg25579328,-0.0000862,0.0000343,-2.514473315,0.012427089,loss,ns,0.000182318,0.0000582,3.132200454,0.001900629,pos,ns,0.140135258,0.017052856,8.217700338,5.71E-15,pos,yes,14.24305881,-0.00431804,0.000586446,-7.363060705,1.63E-12,neg,yes,0.545021509,Ebf3,Ebf3_Intron,7,137212320,137212369,137212320,137212321,50,+,CGGTTCCCTCTGCAGCCGATTGCAGGTGCAAATTAATATTGTAAAATGAA,"Intron (Ebf3-204/Ebf3, intron 10 of 15)",7,137193673,137314445,120773,2,Ebf3-204,102076,Ebf3-204;Ebf3-201;Ebf3-202;Ebf3-203;Ebf3-208;Ebf3-205,Ebf3;Ebf3;Ebf3;Ebf3;Ebf3;Ebf3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,62,84,13593,ENSMUSG00000010476,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7237,cg22062581,-0.0000428,0.0000153,-2.790502641,0.005588743,loss,ns,0.0000816,0.0000261,3.131107722,0.001907495,pos,ns,-0.004975942,0.007638752,-0.651407732,0.515265921,neg,ns,0.28796858,0.000166889,0.000262696,0.635292274,0.525706459,pos,ns,0.071912973,Cntfr,Cntfr_Intron,4,41684979,41685028,41684979,41684980,50,+,CGCTTTTCTGACTTGGCAGCGTTGGGCGTTTTAAATAGACCCATTTAGAG,"Intron (Cntfr-203/Cntfr, intron 2 of 9)",4,41657498,41695442,37945,2,Cntfr-203,10414,Cntfr-203;Cntfr-204;Cntfr-201;Cntfr-202;Cntfr-205,Cntfr;Cntfr;Cntfr;Cntfr;Cntfr,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,12,12804,ENSMUSG00000028444,conserved gene and region,4,41684854,41685032,179,*,179,13,0.581005587,0.865699405,0.072625698,1.77E-08,CpGisland,TRUE,NA,NRS
11318,cg19280670,-0.000000985,0.00000304,-0.323826951,0.746287413,loss,ns,0.0000162,0.00000517,3.130849458,0.001909121,pos,ns,0.005277491,0.001513211,3.487610155,0.000557826,pos,ns,3.253501134,-0.000119843,0.000052,-2.302927079,0.021944812,neg,ns,0.925413812,Galnt7,Galnt7_Exon,8,57552519,57552568,57552567,57552568,50,+,CTGTTCTCATGAGGGTTGACCATCCTTCATTATGGAAGACAATGACAACG,"Exon (Galnt7-201/Galnt7, exon 3 of 12)",8,57523828,57653031,129204,2,Galnt7-201,100463,Galnt7-201;Galnt7-202;Galnt7-204;Gm10284-201,Galnt7;Galnt7;Galnt7;Gm10284,0;0;0;2220,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,108150,ENSMUSG00000031608,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
124,cg14444871,-0.0000103,0.00000384,-2.684196195,0.007661233,loss,ns,0.0000204,0.00000652,3.130788501,0.001909505,pos,ns,0.003919588,0.001910446,2.051661005,0.041042469,pos,ns,1.38676652,-0.000124201,0.0000657,-1.890430819,0.059632887,neg,ns,0.885636228,Kdm2a,Kdm2a_threeUTR,19,4319161,4319210,4319209,4319210,50,-,TCTGAGATGAAGTGCTCGCAGGCTTTTCGAGTGATCTGCTTGCATCCTCG,3' UTR,19,4314419,4398285,83867,2,Kdm2a-201,79075,Kdm2a-201;Kdm2a-202;Kdm2a-213;Kdm2a-211;Kdm2a-207,Kdm2a;Kdm2a;Kdm2a;Kdm2a;Kdm2a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,30,225876,ENSMUSG00000054611,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12473,cg27021764,0.00000807,0.00000905,0.891198299,0.373513965,gain,ns,-0.0000481,0.0000154,-3.130316986,0.001912478,neg,ns,-0.02198353,0.004505408,-4.87936461,0.00000171,neg,ns,5.768224835,0.000513089,0.000154941,3.311518912,0.001037547,pos,ns,0.80485463,Gm13577,Gm13577_Intergenic_downstream,2,64451775,64451824,64451823,64451824,50,-,GTCCCTGACAGGCGATGGATGGTCAGGGTCCATCTGGCCAGTGCAGCTCG,Distal Intergenic,2,64474745,64474949,205,2,Gm13577-201,23174,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,17,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6,cg10092862,-0.0000391,0.00000572,-6.836917827,4.31E-11,loss,yes,-0.0000304,0.00000972,-3.129035579,0.001920578,neg,ns,0.00775987,0.00284881,2.723898817,0.006817504,pos,ns,2.166374616,-0.000266585,0.000098,-2.721083213,0.006874453,neg,ns,0.85016291,Scaf8,Scaf8_threeUTR,17,3198801,3198850,3198801,3198802,50,+,CGTTTCAATGTTGGGTGAATTTTGTTTTTAGATGCCAATAAAACTTATTT,3' UTR,17,3114979,3198859,83881,1,Scaf8-201,83822,Scaf8-201,Scaf8,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,4,106583,ENSMUSG00000046201,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26850,cg21040165,-0.0000167,0.00000902,-1.850048061,0.065258097,loss,ns,-0.0000479,0.0000153,-3.128192384,0.001925926,neg,ns,-0.006384574,0.004488865,-1.422313882,0.155940547,neg,ns,0.807040946,0.00000315,0.000154372,0.020396182,0.983740451,pos,ns,0.692154842,Asxl1,Asxl1_Exon,2,153397942,153397991,153397990,153397991,50,-,GTGTTCACACCGAAAAGCCACAGCCCACTAAAGAGGAGCCCAAAGTCCCG,"Exon (Asxl1-205/Asxl1, exon 11 of 12)",2,153345829,153404007,58179,1,Asxl1-205,52113,Asxl1-205;Asxl1-201;Asxl1-203,Asxl1;Asxl1;Asxl1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,8,228790,ENSMUSG00000042548,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11436,cg22995271,0.0000378,0.0000134,2.814972465,0.005190318,gain,ns,0.0000714,0.0000228,3.127942942,0.00192751,pos,ns,0.030782543,0.006689446,4.601657821,0.00000612,pos,ns,5.21330499,-0.000729432,0.00023005,-3.170762332,0.001672445,neg,ns,0.313738181,Gm14649,Gm14649_Intergenic_downstream,X,58155484,58155533,58155532,58155533,50,+,ACATATGGTCAAATGATCAAAGTCTGAACTCCTCTCTAATTGTCCCCCCG,Distal Intergenic,20,58184163,58184486,324,2,Gm14649-201,28953,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,4,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7299,cg04847116,-0.0000855,0.0000105,-8.166624933,8.10E-15,loss,yes,0.0000556,0.0000178,3.127708122,0.001929003,pos,ns,-0.003453508,0.005211061,-0.66272639,0.507998238,neg,ns,0.294137794,0.000223136,0.000179208,1.245123147,0.214026863,pos,ns,0.751268641,Sfrp5,Sfrp5_Exon,19,42198798,42198847,42198798,42198799,50,-,CGGCCATGAGCAGCAGCTGTCCATCCACTTTGCGGCCCATGACCAGGAAG,"Exon (Sfrp5-201/Sfrp5, exon 3 of 3)",19,42197971,42202252,4282,2,Sfrp5-201,3405,Sfrp5-201;Zfyve27-207,Sfrp5;Zfyve27,0;28231,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,54612,ENSMUSG00000018822,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
25558,cg01009870,0.0000744,0.00000606,12.27654213,1.68E-28,gain,yes,-0.0000322,0.0000103,-3.127205877,0.001932199,neg,ns,-0.008469971,0.003016795,-2.807605949,0.00530746,neg,ns,2.275113247,0.000198729,0.000103747,1.915513052,0.056346904,pos,ns,0.881558855,Ebf3,Ebf3_Intron,7,137227700,137227749,137227748,137227749,50,-,TTGACTTCATGCTAATAAGTTCATACAAATTTTCATTTCTGAGGCTTCCG,"Intron (Ebf3-204/Ebf3, intron 8 of 15)",7,137193673,137314445,120773,2,Ebf3-204,86696,Ebf3-204;Ebf3-201;Ebf3-202;Ebf3-203;Ebf3-208;Ebf3-205;Ebf3-207,Ebf3;Ebf3;Ebf3;Ebf3;Ebf3;Ebf3;Ebf3,0;0;0;0;0;0;-898,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,62,84,13593,ENSMUSG00000010476,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4609,cg26140548,0.0000251,0.00000909,2.763972914,0.006051867,gain,ns,-0.0000483,0.0000154,-3.126861657,0.001934393,neg,ns,0.000206947,0.004525333,0.045730733,0.963554312,pos,ns,0.016123801,-0.000174192,0.000155626,-1.119298534,0.263879308,neg,ns,0.827255179,Ntm,Ntm_Intron,9,29942206,29942255,29942206,29942207,50,-,CGCTCTGCTTGCGAGAATGTTTAATGGATGTCAAGGGAGCTAATGATCGC,"Intron (Ntm-201/Ntm, intron 1 of 7)",9,28994750,29963129,968380,2,Ntm-201,20874,Ntm-201;Ntm-204;Ntm-210;Ntm-207;Ntm-209,Ntm;Ntm;Ntm;Ntm;Ntm,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,27,32,235106,ENSMUSG00000059974,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1108,cg19841392,-0.00000202,0.00000227,-0.890228294,0.374033663,loss,ns,0.000012,0.00000385,3.126503725,0.001936676,pos,ns,0.003135013,0.001128767,2.777377429,0.005813694,pos,ns,2.235547858,-0.00015136,0.0000388,-3.899202191,0.000118345,neg,ns,0.943648451,Ryr2,Ryr2_Intron,13,11624209,11624258,11624257,11624258,50,+,AGTTCTCGCCGAGGCTGGCAAATTTGTTTCTTAAATCTTTGATAATATCG,"Intron (Ryr2-201/Ryr2, intron 80 of 104)",13,11553102,12106945,553844,2,Ryr2-201,482687,Ryr2-201;Ryr2-202;Ryr2-207,Ryr2;Ryr2;Ryr2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,5,20191,ENSMUSG00000021313,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15783,cg23174377,-0.00000113,0.00000114,-0.988232146,0.323809663,loss,ns,0.00000605,0.00000194,3.12632897,0.001937792,pos,ns,0.000905552,0.000567067,1.596904525,0.111305816,pos,ns,0.953482144,-0.0000161,0.0000195,-0.826410084,0.409207102,neg,ns,0.969041569,Tet3,Tet3_Exon,6,83403732,83403781,83403780,83403781,50,-,TAGGCAGGGCCTCAGGCCGCTTGAATACTGACTGGATGTAATCACTGGCG,"Exon (Tet3-202/Tet3, exon 3 of 11)",6,83362373,83441675,79303,2,Tet3-202,37894,Tet3-202;Tet3-203;Tet3-201;Tet3-204,Tet3;Tet3;Tet3;Tet3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,8,194388,ENSMUSG00000034832,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12807,cg08999587,0.0000106,0.00000422,2.519457332,0.01225609,gain,ns,0.0000224,0.00000718,3.126325117,0.001937817,pos,ns,0.006633595,0.002102291,3.155411643,0.001760063,pos,ns,2.754471686,-0.000128738,0.0000723,-1.78066405,0.075946568,neg,ns,0.128505841,Tmem33,Tmem33_Intergenic_upstream,5,67223172,67223221,67223220,67223221,50,+,TAAATACAGACAGGTCCTTGTCAATTAAGGCTTTGAGAAGCAGGTCCTCG,Distal Intergenic,5,67260565,67291461,30897,1,Tmem33-201,-37344,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,22,22,67878,ENSMUSG00000037720,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
21090,cg19500162,-0.00000221,0.00000265,-0.833093426,0.405433431,loss,ns,0.0000141,0.0000045,3.126296141,0.001938002,pos,ns,0.003546961,0.001319196,2.6887291,0.007560362,pos,ns,2.12145743,-0.00008,0.0000454,-1.762768556,0.078924847,neg,ns,0.95144711,Usp24,Usp24_Intron,4,106419893,106419942,106419941,106419942,50,-,GTTTCTAAACAAATAAAATGTTTTTCAAAGCTTTCCATGAGGCGTCAGCG,"Intron (Usp24-204/Usp24, intron 56 of 67)",4,106316213,106441317,125105,1,Usp24-204,103680,Usp24-204;Usp24-201,Usp24;Usp24,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,5,329908,ENSMUSG00000028514,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27098,cg02287493,0.0000813,0.00000938,8.67443594,2.38E-16,gain,yes,0.0000498,0.0000159,3.126293652,0.001938017,pos,ns,0.024375435,0.00466672,5.223247259,0.000000323,pos,ns,6.49056637,-0.00043686,0.000160488,-2.722070117,0.006854443,neg,ns,0.385122641,Cnksr2,Cnksr2_Exon,X,158042772,158042821,158042820,158042821,50,+,ATTACCTTTCATCCAGTCCACTACTTGACTCGGAGACCATTTGCTCACCG,Promoter (<=1kb),20,157821436,158043294,221859,2,Cnksr2-201,473,Cnksr2-201;Cnksr2-202,Cnksr2;Cnksr2,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,11,245684,ENSMUSG00000025658,conserved gene and region,X,158042802,158043636,835,*,835,118,0.761676647,0.977839088,0.141317365,1.60E-109,CpGisland,TRUE,U3,Pr-B
10084,cg20747380,0.00019955,0.0000117,17.10164495,1.21E-46,gain,yes,-0.0000619,0.0000198,-3.124189778,0.001951498,neg,ns,0.024116057,0.005807528,4.152551099,0.0000425,pos,ns,4.371131264,-0.000410536,0.00019972,-2.05555267,0.040662988,neg,ns,0.320521562,Hoxa2,Hoxa2_fiveUTR,6,52164801,52164850,52164801,52164802,50,+,CGTATGGGGACCGCGCTACTATTAAACTATTGAATTCATGGAGACAAGGT,Promoter (<=1kb),6,52162417,52164831,2415,2,Hoxa2-201,0,Gm28308-201;Hoxa2-201;Hoxa3-201,Gm28308;Hoxa2;Hoxa3,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,3,15399,ENSMUSG00000014704,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21232,cg25520032,0.0000481,0.0000197,2.441299462,0.01519362,gain,ns,-0.00010457,0.0000335,-3.124135511,0.001951846,neg,ns,-0.002228224,0.009806079,-0.227228819,0.820395599,neg,ns,0.085976678,0.0000417,0.00033723,0.123620793,0.901695641,pos,ns,0.74043431,Gm13901,Gm13901_Intergenic_upstream,2,106895639,106895688,106895639,106895640,50,-,CGCCACCAAAGCTTATTATCTAGGGCAATAAAGTTTAGGATTAGGGGGAT,Distal Intergenic,2,106916771,106917238,468,1,Gm13901-201,-21132,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,3,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25828,cg12827251,0.00002,0.00000873,2.293108424,0.022510933,gain,ns,0.0000463,0.0000148,3.123418518,0.001956461,pos,ns,0.017991026,0.004342661,4.142857818,0.0000443,pos,ns,4.353720014,-0.000242589,0.000149344,-1.624365962,0.105314013,neg,ns,0.127281199,Uncx,Uncx_Intergenic_downstream,5,139585562,139585611,139585562,139585563,50,+,CGCTCAAGTCAGTTAAATTGATACATTTCCTAACGAAATTGAAGTGCTTT,Distal Intergenic,5,139543898,139545268,1371,1,Uncx-202,41664,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,59,88,22255,ENSMUSG00000029546,conserved gene and region,5,139585354,139585726,373,*,373,27,0.616621984,0.761512287,0.072386059,4.94E-17,CpGisland,TRUE,U13,Hc-P
14408,cg20289217,0.000137001,0.0000171,7.994774491,2.59E-14,gain,yes,-0.0000909,0.0000291,-3.122321224,0.001963542,neg,ns,0.01775653,0.008528947,2.081913424,0.038170393,pos,ns,1.418273364,-0.000849196,0.00029331,-2.89521903,0.004058021,neg,ns,0.196344004,Tlcd2,Tlcd2_Intron,11,75463146,75463195,75463194,75463195,50,+,CCGGCAGACAGCCTGGAATTCATACCAGATGTACCCGGAATGCGCAAGCG,"Intron (Mir22hg-202/Mir22hg-202, intron 1 of 2)",11,75461715,75469663,7949,1,Tlcd2-203,1431,Tlcd2-203;Tlcd2-201;Tlcd2-202,Tlcd2;Tlcd2;Tlcd2,0;-4884;-4884,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,6,380712,ENSMUSG00000038217,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6966,cg11128041,0.00000788,0.00000919,0.857407535,0.391882057,gain,ns,0.0000487,0.0000156,3.120507422,0.0019753,pos,ns,-0.000134494,0.004574087,-0.029403501,0.976561701,neg,ns,0.010300312,0.000232287,0.000157302,1.476689251,0.140774054,pos,ns,0.836519847,Lsamp,Lsamp_Intron,16,40234543,40234592,40234591,40234592,50,+,TGCAGCTTGTGCTCCGTTCAAACATGTCAATAAACATTATTGCAAAGACG,"Intron (Lsamp-207/Lsamp, intron 1 of 2)",16,39984361,40979709,995349,1,Lsamp-207,250182,Lsamp-207;Lsamp-206;Lsamp-208;Lsamp-210;Lsamp-209,Lsamp;Lsamp;Lsamp;Lsamp;Lsamp,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,23,268890,ENSMUSG00000061080,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2256,cg24954327,-0.0000158,0.0000096,-1.649025402,0.10015539,loss,ns,0.0000509,0.0000163,3.119907759,0.001979201,pos,ns,0.010800005,0.004776611,2.26101828,0.024451085,pos,ns,1.611701864,-0.000118597,0.000164267,-0.721972843,0.4708554,neg,ns,0.198246908,Meis1,Meis1_Intergenic_downstream,11,18874409,18874458,18874457,18874458,50,-,CAAGACAGGTACTTGATTTAGCATTTAAGCAAAAGGTTACACAAACCGCG,Distal Intergenic,11,18880668,19012002,131335,2,Meis1-203,137593,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,88,17268,ENSMUSG00000020160,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
5714,cg26366602,-0.0000292,0.0000118,-2.480166578,0.013662846,loss,ns,0.0000623,0.00002,3.119895734,0.00197928,pos,ns,0.006328505,0.005854345,1.080992855,0.280540519,pos,ns,0.552004404,-0.000139254,0.00020133,-0.691671196,0.489661523,neg,ns,0.429329565,Kctd15,Kctd15_Intergenic_downstream,7,34606325,34606374,34606325,34606326,50,+,CGGCCTCAGGCAGCCTAAAACCTTTGGAGACCAAAATGGCTCGCAGGGGT,Distal Intergenic,7,34640182,34648744,8563,2,Kctd15-206,42370,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,25,233107,ENSMUSG00000030499,conserved gene and region,7,34606195,34606326,132,*,132,9,0.606060606,0.754285714,0.068181818,0.00000904,CpGisland,TRUE,U15,NS
26248,cg01097606,0.000127027,0.0000224,5.680854692,3.09E-08,gain,yes,-0.000118491,0.000038,-3.119200268,0.001983813,neg,ns,0.052739768,0.011129115,4.738900259,0.00000328,pos,ns,5.484330721,-0.002392759,0.000382729,-6.251830832,1.34E-09,neg,yes,0.546500977,Cpsf4,Cpsf4_Exon,5,145178771,145178820,145178771,145178772,50,-,CGCCATTACAAAGGTCGTCCTCCTTGATCCAGTTAACGAGTCAGAACTCT,"Exon (Cpsf4-202/Cpsf4, exon 7 of 8)",5,145167213,145182041,14829,1,Cpsf4-205,11558,Atp5j2-202;Atp5j2-204;Atp5j2-201;Cpsf4-205;Cpsf4-201;Cpsf4-202;Cpsf4-207;Cpsf4-204;Cpsf4-206;Cpsf4-203,Atp5j2;Atp5j2;Atp5j2;Cpsf4;Cpsf4;Cpsf4;Cpsf4;Cpsf4;Cpsf4;Cpsf4,13242;12772;12772;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,54188,ENSMUSG00000029625,mapped to different genes,5,145178540,145178844,305,*,305,13,0.508196721,0.677777778,0.042622951,0.00000739,CpGisland,TRUE,NA,NRS
15426,cg04383857,0.0000175,0.00000411,4.263139613,0.0000268,gain,ns,-0.0000218,0.00000699,-3.118543998,0.0019881,neg,ns,-0.000994992,0.002047551,-0.485942389,0.627351317,neg,ns,0.202489186,0.00011418,0.0000704,1.621532216,0.105920152,pos,ns,0.898093004,Tnrc6b,Tnrc6b_Exon,15,80879950,80879999,80879950,80879951,50,-,CGACTGGGTCTGATGAGTTGAAAATTGGAGAATGGAGTGGTCCAAACCAA,"Exon (Tnrc6b-201/Tnrc6b, exon 8 of 25)",15,80711313,80941085,229773,1,Tnrc6b-201,168637,Tnrc6b-201;Tnrc6b-204;Tnrc6b-207;Tnrc6b-208;Tnrc6b-206;Tnrc6b-209,Tnrc6b;Tnrc6b;Tnrc6b;Tnrc6b;Tnrc6b;Tnrc6b,0;0;0;0;-2674;-4351,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,20,24,213988,ENSMUSG00000047888,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27363,cg19033447,0.0000505,0.00000769,6.563825609,2.20E-10,gain,yes,0.0000407,0.0000131,3.118014153,0.001991568,pos,ns,0.013557875,0.003826088,3.543535065,0.00045558,pos,ns,3.341435471,-0.0000865,0.000131579,-0.657245175,0.511510951,neg,ns,0.076657101,Glra2,Glra2_Promoter,X,165327401,165327450,165327401,165327402,50,-,CGGAGACGTGATCTTACCCAGCCTATAAATTTCAGCACTCGGACAGCTCC,Promoter (<=1kb),20,165129017,165327393,198377,2,Glra2-201,-57,Glra2-201,Glra2,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,5,237213,ENSMUSG00000018589,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1708,cg14295283,0.000013,0.00000714,1.821808674,0.069447552,gain,ns,-0.0000378,0.0000121,-3.117854125,0.001992616,neg,ns,0.003180085,0.003554233,0.894731718,0.371624674,pos,ns,0.429895459,-0.00012799,0.00012223,-1.047127372,0.295856574,neg,ns,0.724728426,Ss18,Ss18_Intron,18,14654827,14654876,14654875,14654876,50,+,GCTACATCAAAGCCCAAGGGCAGCCTGATAAACACTGAATACAGGTCACG,"Intron (Ss18-202/Ss18, intron 4 of 9)",18,14624198,14682766,58569,2,Ss18-202,27890,Ss18-202;Ss18-201;Ss18-210;Ss18-203;Ss18-206;Ss18-205;Ss18-204;Ss18-209;Ss18-211;Ss18-208,Ss18;Ss18;Ss18;Ss18;Ss18;Ss18;Ss18;Ss18;Ss18;Ss18,0;0;0;0;0;0;0;0;0;15910,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,10,268996,ENSMUSG00000037013,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18688,cg18378793,0.000000313,0.00000263,0.118872382,0.905453455,gain,ns,0.0000139,0.00000447,3.117108505,0.001997507,pos,ns,0.002612368,0.001308851,1.995924271,0.046816761,pos,ns,1.329598635,-0.0000162,0.000045,-0.360336147,0.718841159,neg,ns,0.943235855,Skap1,Skap1_Intron,11,96738991,96739040,96739039,96739040,50,+,ATATTCATCACTGAGTAATTTTTTACCACATAAATCTTTAAAACTAACCG,"Intron (Skap1-204/Skap1, intron 11 of 12)",11,96464593,96758941,294349,1,Skap1-204,274398,Skap1-204;Skap1-203;Skap1-201,Skap1;Skap1;Skap1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,40,46,78473,ENSMUSG00000057058,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11536,cg24911286,0.000000599,0.0000064,0.093600881,0.925486675,gain,ns,-0.0000339,0.0000109,-3.115200203,0.002010076,neg,ns,-0.001967084,0.003186994,-0.617222396,0.537541124,neg,ns,0.269588305,0.0000853,0.0001096,0.778470697,0.436885357,pos,ns,0.813687045,Shtn1,Shtn1_Intron,19,59044237,59044286,59044285,59044286,50,-,TATGAAATCACGCAATAGGTCCTAAAATGCAGCTGCTTGGCATACAAACG,"Intron (Shtn1-202/Shtn1, intron 3 of 14)",19,58973356,59076069,102714,2,Shtn1-202,31783,Shtn1-202;Shtn1-201,Shtn1;Shtn1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,10,71653,ENSMUSG00000041362,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13496,cg05280471,0.00000439,0.00000472,0.93069548,0.352735308,gain,ns,-0.000025,0.00000801,-3.114867968,0.002012272,neg,ns,-0.001156574,0.00234711,-0.492765265,0.622527294,neg,ns,0.205841603,-0.00000554,0.0000807,-0.068620451,0.945335979,neg,ns,0.893205589,Kcnn1,Kcnn1_Exon,8,70848169,70848218,70848217,70848218,50,+,ACTTACTGATGGATGGCTTGGAGGAACTTACGCTGGTGTTTCCGAACCCG,"Exon (Kcnn1-202/Kcnn1, exon 7 of 10)",8,70842049,70857008,14960,2,Kcnn1-202,8790,Kcnn1-202;Kcnn1-201;Kcnn1-204;Kcnn1-208;Kcnn1-205;Kcnn1-207;Kcnn1-203,Kcnn1;Kcnn1;Kcnn1;Kcnn1;Kcnn1;Kcnn1;Kcnn1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,84036,ENSMUSG00000002908,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
9665,cg11376093,-0.00000968,0.00000598,-1.619061658,0.106450871,loss,ns,0.0000316,0.0000102,3.114261018,0.002016289,pos,ns,-0.00011606,0.002974246,-0.039021563,0.968898315,neg,ns,0.013721799,-0.0000385,0.000102284,-0.376068374,0.707123298,neg,ns,0.873675969,Igsf1,Igsf1_Intron,X,49786735,49786784,49786735,49786736,50,+,CGCCTGCCTGGCTCTAAGATTGGACACAGGCTCTCAGGACCAGCAGCAAA,"Intron (Igsf1-204/Igsf1, intron 4 of 10)",20,49782536,49788243,5708,2,Igsf1-204,1459,Igsf1-204;Igsf1-201;Igsf1-202,Igsf1;Igsf1;Igsf1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,209268,ENSMUSG00000031111,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1718,cg04109263,0.000015,0.0000396,0.37890144,0.705020433,gain,ns,-0.000209376,0.0000672,-3.114136515,0.002017114,neg,ns,-0.018628429,0.019697342,-0.945733135,0.345021273,neg,ns,0.462154127,-0.000438143,0.00067739,-0.646810626,0.518233128,neg,ns,0.497309613,Tle4,Tle4_Intergenic_upstream,19,14777476,14777525,14777476,14777477,50,-,CGCTTGTTTCTCAGTTTCCAGCTGGCACGGGCTGCTGACTGGAGCCCTAA,Distal Intergenic,19,14448150,14598051,149902,2,Tle4-201,-179474,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,29,21888,ENSMUSG00000024642,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23405,cg09986036,-0.0000366,0.0000083,-4.407822715,0.0000144,loss,ns,-0.0000439,0.0000141,-3.114124412,0.002017194,neg,ns,-0.016683883,0.004133126,-4.036625918,0.0000684,neg,ns,4.165050931,-0.0000741,0.000142138,-0.521105688,0.602665189,neg,ns,0.892494035,Usp36,Usp36_Exon,11,118272967,118273016,118272967,118272968,50,-,CGTAGGCCTGCTGGTTCAGAACCACCTTGACGTTGCTGGAATGGACCAAG,"Exon (Usp36-202/Usp36, exon 12 of 21)",11,118259651,118290231,30581,2,Usp36-202,17215,Usp36-202;Usp36-201;Usp36-204,Usp36;Usp36;Usp36,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,72344,ENSMUSG00000033909,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11348,cg03422384,0.00000255,0.00000547,0.46537732,0.641988028,gain,ns,-0.000029,0.0000093,-3.114062744,0.002017603,neg,ns,0.013375238,0.00272383,4.910452688,0.00000147,pos,ns,5.831939557,-0.000530009,0.0000937,-5.658117124,3.48E-08,neg,yes,0.91839311,Clk3,Clk3_Exon,9,57758277,57758326,57758277,57758278,50,-,CGCTCACCTGGCATGGTCCAAGCACTCCACCACCTTGCCAAAGGTGCCTT,"Exon (Clk3-207/Clk3, exon 4 of 12)",9,57750624,57765103,14480,2,Clk3-207,6777,Clk3-207;Clk3-201;Clk3-205;Clk3-203;Clk3-206;Clk3-202;Clk3-209;Clk3-208;Clk3-204,Clk3;Clk3;Clk3;Clk3;Clk3;Clk3;Clk3;Clk3;Clk3,0;0;0;0;-2956;-4816;0;5982;6527,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,14,102414,ENSMUSG00000032316,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
10063,cg26644873,-0.00000369,0.00000265,-1.392612264,0.164735078,loss,ns,0.000014,0.0000045,3.113668155,0.00202022,pos,ns,0.00346474,0.001317886,2.629014294,0.008990087,pos,ns,2.046236084,-0.0000944,0.0000453,-2.082813447,0.038087647,neg,ns,0.937326009,Ppp2ca,Ppp2ca_Exon,11,52119134,52119183,52119182,52119183,50,+,ATTTTTTAGGGTCCAATGTGTGACTTGCTGTGGTCAGATCCAGATGACCG,"Exon (Ppp2ca-201/Ppp2ca, exon 5 of 7)",11,52098681,52127778,29098,1,Ppp2ca-201,20453,Ppp2ca-201;Ppp2ca-202,Ppp2ca;Ppp2ca,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,2,19052,ENSMUSG00000020349,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8013,cg19982295,0.0000116,0.00000229,5.080685398,0.000000651,gain,yes,-0.0000121,0.00000389,-3.11343047,0.002021798,neg,ns,-0.000671975,0.001140784,-0.589046708,0.556258931,neg,ns,0.254723004,0.0000427,0.0000392,1.088414654,0.277257536,pos,ns,0.062672909,Pax2,Pax2_Intergenic_upstream,19,44684038,44684087,44684086,44684087,50,+,TTTAAGCAAATGACTGTGTCAGCTTCTATTTACTCCTGACAGGATCGCCG,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-71958,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,19,44684083,44684169,87,*,87,12,0.643678161,1.338461539,0.137931035,3.16E-11,CpGisland,TRUE,U13,Hc-P
13088,cg13881017,0.0000411,0.000011,3.747253746,0.000213188,gain,ns,-0.000058,0.0000186,-3.113217013,0.002023216,neg,ns,0.039248482,0.005456674,7.192747965,4.79E-12,pos,yes,11.31935216,-0.001356899,0.000187655,-7.230834984,3.77E-12,neg,yes,0.750528065,Kdm6b,Kdm6b_Exon,11,69406378,69406427,69406378,69406379,50,-,CGGTGGTTGCTGCTGGTGAAACGCTGGAGTCCATCCGCGACCTCTGAACT,"Exon (Kdm6b-201/Kdm6b, exon 10 of 23)",11,69398508,69413675,15168,2,Kdm6b-201,7248,Kdm6b-201;Kdm6b-202,Kdm6b;Kdm6b,0;-2163,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,8,216850,ENSMUSG00000018476,conserved gene and region,11,69406336,69406459,124,*,124,10,0.661290323,0.766852195,0.080645161,0.000000493,CpGisland,TRUE,U10,Tr-S
17053,cg10730492,-0.0000138,0.000018,-0.764714012,0.445023587,loss,ns,0.0000953,0.0000306,3.113157462,0.002023612,pos,ns,0.020006081,0.008970388,2.230235804,0.026447402,pos,ns,1.577616982,0.000149589,0.000308491,0.484905862,0.628085589,pos,ns,0.434104922,Il1rapl1,Il1rapl1_Promoter,X,88115875,88115924,88115875,88115876,50,+,CGAAAACAAGAAAGAGAAACTGCAACGCATAAATGATTCCAGTGTTTCTA,Promoter (<=1kb),20,86769118,88115645,1346528,2,Il1rapl1-202,-230,Il1rapl1-203;Il1rapl1-202,Il1rapl1;Il1rapl1,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,6,18,331461,ENSMUSG00000052372,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26367,cg15154886,0.0000377,0.0000172,2.195488569,0.028869453,gain,ns,0.0000909,0.0000292,3.113065458,0.002024223,pos,ns,0.000448576,0.008557156,0.052421174,0.958226866,pos,ns,0.018531657,-0.0000385,0.00029428,-0.130826552,0.895997375,neg,ns,0.843527255,Htr2c,Htr2c_Exon,X,147169672,147169721,147169720,147169721,50,+,ATCGGTATGTAGCAATACGTAATCCTATTGAGCATAGCCGTTTCAATTCG,"Exon (Htr2c-201/Htr2c, exon 5 of 6)",20,146962513,147197274,234762,1,Htr2c-201,207159,Htr2c-201;Htr2c-202;Htr2c-207;Htr2c-203,Htr2c;Htr2c;Htr2c;Htr2c,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,8,15560,ENSMUSG00000041380,conserved gene and region,X,147169604,147169752,149,*,149,10,0.483221477,1.157731158,0.067114094,0.00000263,CpGisland,TRUE,U15,NS
9076,cg26289105,-0.0000125,0.00000577,-2.167767544,0.030937131,loss,ns,0.0000305,0.00000981,3.112929675,0.002025126,pos,ns,0.010996517,0.002872763,3.827853131,0.000156385,pos,ns,3.805805812,-0.000346828,0.0000988,-3.510612161,0.000513414,neg,ns,0.883774642,Gm8863,Gm8863_Intergenic_upstream,9,46784172,46784221,46784172,46784173,50,+,CGTTTTAGTTTAGCCAAATTTGTGGAAATTTACATAGCAAATTGACCCTC,Distal Intergenic,9,46713233,46714158,926,2,Gm8863-201,-70014,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,20,667890,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
168,cg06475639,-0.00000988,0.00000378,-2.610423972,0.009482295,loss,ns,-0.00002,0.00000643,-3.112916301,0.002025215,neg,ns,-0.001444001,0.001883825,-0.766525707,0.443946877,neg,ns,0.352668995,-0.000000325,0.0000648,-0.005022119,0.995996176,neg,ns,0.886711613,Mtmr3,Mtmr3_threeUTR,11,4481084,4481133,4481132,4481133,50,-,TAAGAGCTGCAAGCATTTATTCACACTGTACATCAGACCCAAGAAACCCG,3' UTR,11,4480868,4594815,113948,2,Mtmr3-202,113682,Mtmr3-202;Mtmr3-207;Mtmr3-201;Mtmr3-203;Mtmr3-205;Mtmr3-204,Mtmr3;Mtmr3;Mtmr3;Mtmr3;Mtmr3;Mtmr3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,4,74302,ENSMUSG00000034354,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7129,cg26422848,-0.0000173,0.00000541,-3.199306397,0.001520152,loss,ns,-0.0000286,0.00000919,-3.112870782,0.002025518,neg,ns,-0.00518542,0.002693649,-1.925053872,0.055137395,neg,ns,1.25855376,-0.000238343,0.0000926,-2.572939284,0.010548814,neg,ns,0.886988776,Ube2r2,Ube2r2_Exon,4,41190683,41190732,41190731,41190732,50,+,CAAAACTAAAGTGCCTTCCAATGACAACAGCTCAGATTTGCTTTACGACG,"Exon (Ube2r2-201/Ube2r2, exon 5 of 5)",4,41135743,41193380,57638,1,Ube2r2-201,54940,Ubap2-202;Ubap2-201;Ubap2-206;Ube2r2-201;Ube2r2-203;Ube2r2-202,Ubap2;Ubap2;Ubap2;Ube2r2;Ube2r2;Ube2r2,84412;84403;5033;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,67615,ENSMUSG00000036241,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27926,cg22299662,0.0000521,0.0000124,4.214284187,0.0000329,gain,ns,0.0000653,0.000021,3.11181046,0.002032583,pos,ns,-0.004171173,0.006148092,-0.678449986,0.497992558,neg,ns,0.302777147,0.000510831,0.000211432,2.416048613,0.016267677,pos,ns,0.70186659,Prox1,Prox1_Intergenic_upstream,1,190375280,190375329,190375280,190375281,50,-,CGTTTCAAGTGTCAATCAAAAAGGAAGGACGCAGCTTAGGTCCTGGTCAT,Distal Intergenic,1,190118035,190170714,52680,2,Prox1-202,-204615,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,13,59,19130,ENSMUSG00000010175,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20289,cg13127071,0.00000826,0.0000109,0.761244755,0.447089575,gain,ns,0.0000574,0.0000184,3.111655483,0.002033617,pos,ns,0.015573406,0.005400462,2.883717374,0.004205121,pos,ns,2.376221519,-0.000350974,0.000185721,-1.889789812,0.059718914,neg,ns,0.200558594,Hoxc5,Hoxc5_Intron,15,102987051,102987100,102987051,102987052,50,+,CGGATTATAGGAATGTTTTGTCTATGGCCCACGGAGAACAGGACCTCACT,"Intron (Hoxc5-202/Hoxc5, intron 1 of 1)",15,102967443,103015676,48234,1,Hoxc5-202,19608,Hoxc5-202;Hoxc8-201;Hoxc8-202;Hoxc9-201,Hoxc5;Hoxc8;Hoxc8;Hoxc9,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,46,134,15424,ENSMUSG00000022485,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
20418,cg11980067,0.0000841,0.00000592,14.20458467,1.29E-35,gain,yes,-0.0000313,0.0000101,-3.111304493,0.002035962,neg,ns,0.00275107,0.002947381,0.933394751,0.351342617,pos,ns,0.454269169,0.0000164,0.00010136,0.161960931,0.871442132,pos,ns,0.169701897,Hoxc4,Hoxc4_Exon,15,103034785,103034834,103034833,103034834,50,+,AGAATATTCGCAAAATAGCTACATCCCTGAACACAGTCCGGAATATTACG,"Exon (Hoxc4-202/Hoxc4, exon 2 of 4)",15,103018934,103036405,17472,1,Hoxc4-202,15851,Hoxc4-202;Hoxc4-201,Hoxc4;Hoxc4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,91,15423,ENSMUSG00000075394,conserved gene and region,15,103034736,103035107,372,*,372,27,0.626344086,0.794494542,0.072580645,4.60E-17,CpGisland,TRUE,NA,NRS
24534,cg18232211,0.000022,0.00000918,2.399855022,0.016991264,gain,ns,0.0000485,0.0000156,3.110111804,0.002043948,pos,ns,0.018139226,0.004569924,3.969261741,0.0000896,pos,ns,4.047457356,-0.0000645,0.000157159,-0.410522493,0.681706301,neg,ns,0.37614933,Doc2a,Doc2a_Exon,7,126848595,126848644,126848595,126848596,50,-,CGCAGGGGCGATCGCATGACCATCAACATCCAGGAGCACATGGCCATCAA,"Exon (Doc2a-204/Doc2a, exon 2 of 4)",7,126847416,126849525,2110,1,Doc2a-204,1179,Doc2a-204;Doc2a-201;Doc2a-207;Doc2a-209;Doc2a-206;Doc2a-205;Doc2a-203;Doc2a-202;Doc2a-208;Ino80e-211;Ino80e-201;Ino80e-202;Ino80e-203;Ino80e-204;Ino80e-214;Ino80e-208;Ino80e-213;Ino80e-215;Ino80e-212,Doc2a;Doc2a;Doc2a;Doc2a;Doc2a;Doc2a;Doc2a;Doc2a;Doc2a;Ino80e;Ino80e;Ino80e;Ino80e;Ino80e;Ino80e;Ino80e;Ino80e;Ino80e;Ino80e,0;0;0;0;0;0;0;0;-153;12627;12819;13042;13194;13733;13216;13088;9086;13717;13139,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,13446,ENSMUSG00000052301,conserved gene and region,7,126848542,126848748,207,*,207,15,0.676328502,0.634839501,0.072463768,1.06E-09,CpGisland,TRUE,U13,Hc-P
23183,cg14259906,0.0000979,0.0000134,7.297523724,2.48E-12,gain,yes,-0.0000709,0.0000228,-3.109750414,0.002046374,neg,ns,0.015667131,0.00667561,2.34692131,0.01955833,pos,ns,1.708668222,-0.000523315,0.000229574,-2.279508146,0.023316146,neg,ns,0.623098107,Rnf220,Rnf220_Intron,4,117391704,117391753,117391704,117391705,50,-,CGGTCTCAAATGAAATATCGAACATTCAGCGTTTAGGTCCTGAATAGGGG,"Intron (Rnf220-201/Rnf220, intron 2 of 14)",4,117271463,117497052,225590,2,Rnf220-201,105299,Rnf220-201;Rnf220-207,Rnf220;Rnf220,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23066,cg23720877,-0.000000774,0.00000695,-0.111240863,0.911497337,loss,ns,-0.0000367,0.0000118,-3.109747222,0.002046395,neg,ns,0.00110643,0.00346149,0.319639974,0.749456571,pos,ns,0.125253528,-0.000454875,0.00011904,-3.821187394,0.000160476,neg,ns,0.702445283,Taok3,Taok3_Exon,5,117251049,117251098,117251049,117251050,50,+,CGAGCTGGAGAAGCTGGCCAAGAAGCAAGTGGCTATCATAGAAAAGGAGG,"Exon (Taok3-203/Taok3, exon 15 of 21)",5,117120129,117275217,155089,1,Taok3-203,130920,Taok3-203;Taok3-210;Taok3-201;Taok3-208;Taok3-202,Taok3;Taok3;Taok3;Taok3;Taok3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,20,330177,ENSMUSG00000061288,conserved gene and region,5,117250755,117251050,296,*,296,22,0.648648649,0.709368192,0.074324324,3.15E-14,CpGisland,TRUE,U10,Tr-S
9319,cg12977525,-0.0000235,0.0000106,-2.226227864,0.026717465,loss,ns,0.0000557,0.0000179,3.109457636,0.002048341,pos,ns,0.016325698,0.005251717,3.108640288,0.002053841,pos,ns,2.687433087,-0.000663584,0.000180606,-3.674205542,0.000281013,neg,ns,0.788703712,Nxpe4,Nxpe4_Intergenic_upstream,9,48124013,48124062,48124061,48124062,50,+,AATTAGATTTCTTCTGAAGAGTTATTTTCAAGGGTTTTTATCCACTGACG,Distal Intergenic,9,48162023,48399871,237849,1,Nxpe4-203,-37961,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,7,244853,ENSMUSG00000044229,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10326,cg01490570,0.00000573,0.00000355,1.612245313,0.107926128,gain,ns,-0.0000188,0.00000603,-3.109247996,0.00204975,neg,ns,-0.001854555,0.00176736,-1.049336549,0.294840618,neg,ns,0.530412687,0.0000488,0.0000608,0.803197801,0.422475815,pos,ns,0.91818964,Fmnl2,Fmnl2_Exon,2,53054492,53054541,53054492,53054493,50,+,CGGTGGACAAATCAAAGCCCTGGAGTAGGTCCATCGAGGACCTGCACAGA,"Exon (Fmnl2-205/Fmnl2, exon 6 of 27)",2,52857860,53132203,274344,1,Fmnl2-205,196632,Fmnl2-205;Fmnl2-201;Fmnl2-203;Fmnl2-204;Fmnl2-202,Fmnl2;Fmnl2;Fmnl2;Fmnl2;Fmnl2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,71409,ENSMUSG00000036053,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4491,cg23613139,0.000314385,0.000022,14.30773109,5.28E-36,gain,yes,-0.000116048,0.0000373,-3.108755649,0.002053064,neg,ns,0.021800446,0.010936238,1.993413681,0.047092266,pos,ns,1.327050411,-0.000595449,0.000376096,-1.583234133,0.114387733,neg,ns,0.518075978,Spred3,Spred3_Exon,7,29167872,29167921,29167872,29167873,50,+,CGACACACGCTCACCTGGCTGAGGCCCCCGCCCCCCACAGGCAGCCAGCC,Promoter (<=1kb),7,29158829,29168647,9819,2,Spred3-201,726,Ggn-202;Ggn-201;Ggn-203;Ggn-205;Ggn-204;Spred3-201;Spred3-203;Spred3-202;Spred3-204,Ggn;Ggn;Ggn;Ggn;Ggn;Spred3;Spred3;Spred3;Spred3,-2289;-2469;-2469;-2486;-2583;0;-722;0;2490,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,7,101809,ENSMUSG00000037239,conserved gene and region,7,29167803,29167963,161,*,161,14,0.745341615,0.667851852,0.086956522,3.80E-10,CpGisland,TRUE,U13,Hc-P
11540,cg03045079,0.0000497,0.000011,4.519865204,0.00000882,gain,ns,-0.0000581,0.0000187,-3.108093624,0.002057528,neg,ns,-0.000455381,0.005472139,-0.083218175,0.933731771,neg,ns,0.029777864,-0.000541389,0.000188186,-2.876874539,0.004294927,neg,ns,0.252606657,Pnn,Pnn_Exon,12,59067783,59067832,59067831,59067832,50,+,ATCCAAGCCAGATTGCTGGCCCTTTCTGGTCCTGGTGGAGGTAGAGGACG,Promoter (<=1kb),12,59066884,59073998,7115,1,Pnn-201,899,Pnn-201;Pnn-203;Pnn-204;Pnn-202,Pnn;Pnn;Pnn;Pnn,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,18949,ENSMUSG00000020994,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14787,cg06047944,0.000272603,0.0000258,10.55237503,1.92E-22,gain,yes,-0.000136379,0.0000439,-3.107479944,0.002061674,neg,ns,0.123492825,0.012857512,9.60472176,2.72E-19,pos,yes,18.56482556,-0.00165021,0.000442169,-3.732080795,0.000225859,neg,ns,0.34332897,Gm11146,Gm11146_Intron,16,77662302,77662351,77662350,77662351,50,-,GCAGATAATTAGGTTCTGTCTCACAGGTTCATTTTCCTGTGACTGGGACG,"Intron (Mir99ahg-211/Mir99ahg-211, intron 5 of 6)",16,77588578,77602094,13517,2,Gm11146-201,-60257,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,21,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8650,cg16059869,0.000196472,0.0000204,9.636685549,2.14E-19,gain,yes,-0.000107549,0.0000346,-3.10507568,0.00207799,neg,ns,0.006458204,0.010147298,0.636445653,0.524955637,pos,ns,0.279877397,0.000363207,0.000348965,1.04081233,0.298773707,pos,ns,0.515218968,Btrc,Btrc_Intron,19,45477607,45477656,45477655,45477656,50,-,GGGTTTAACTAATGGCTGATTTTCATGGCTTTGACAGTGAGCTGTGTGCG,"Intron (Btrc-204/Btrc, intron 1 of 2)",19,45363734,45507736,144003,1,Btrc-204,113873,Btrc-204;Btrc-201;Btrc-210;Btrc-202;Btrc-203;Btrc-209,Btrc;Btrc;Btrc;Btrc;Btrc;Btrc,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,63,98,12234,ENSMUSG00000025217,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11895,cg21443940,0.0000598,0.000012,4.975611448,0.00000108,gain,yes,-0.0000634,0.0000204,-3.104767199,0.002080092,neg,ns,-0.010386503,0.005985219,-1.735358945,0.083671007,neg,ns,1.077425002,-0.0000564,0.000205831,-0.27387662,0.784361834,neg,ns,0.125439953,Csnk1a1,Csnk1a1_Exon,18,61557016,61557065,61557064,61557065,50,-,TGTTTTTGTTCCAACATGTCTTCCTCCTCCGCTTAGAAAATGGCGGAACG,"Exon (Csnk1a1-205/Csnk1a1, exon 2 of 2)",18,61555274,61590061,34788,1,Csnk1a1-204,1742,Csnk1a1-204;Csnk1a1-206;Csnk1a1-201;Csnk1a1-207;Csnk1a1-202;Csnk1a1-205;Csnk1a1-210;Csnk1a1-208,Csnk1a1;Csnk1a1;Csnk1a1;Csnk1a1;Csnk1a1;Csnk1a1;Csnk1a1;Csnk1a1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,9,93687,ENSMUSG00000024576,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
15379,cg05279637,0.0000266,0.0000154,1.721894907,0.086086063,gain,ns,0.0000814,0.0000262,3.103971776,0.002085521,pos,ns,0.009835081,0.007683752,1.279984158,0.201507725,pos,ns,0.695708299,0.000000972,0.000264244,0.003679985,0.99706617,pos,ns,0.480513131,Gm46388,Gm46388_Intergenic_downstream,13,80623200,80623249,80623248,80623249,50,-,GTTTCAGATGTAGCAGAATTTGTCTGTCTACAAACAGGGATACTTTGTCG,Distal Intergenic,13,80493009,80493484,476,1,Gm46388-201,130240,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,11,108168047,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7837,cg13427453,0.00013659,0.00000891,15.32529648,7.47E-40,gain,yes,-0.000047,0.0000151,-3.102205797,0.002097622,neg,ns,-0.002731516,0.004435954,-0.615767351,0.538499907,neg,ns,0.268814367,0.000221316,0.000152552,1.450756336,0.147858815,pos,ns,0.648685465,Bcl9l,Bcl9l_Intron,9,44500016,44500065,44500064,44500065,50,-,ATATCCTCTCCCGTGATGTGATCTTTCCAGCGGCTATTAATAGGTCTCCG,"Intron (Bcl9l-206/Bcl9l, intron 1 of 7)",9,44482825,44510422,27598,1,Bcl9l-206,17191,Bcl9l-206;Bcl9l-202;Bcl9l-203;Bcl9l-205;Bcl9l-201;Bcl9l-204,Bcl9l;Bcl9l;Bcl9l;Bcl9l;Bcl9l;Bcl9l,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,9,80288,ENSMUSG00000063382,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6081,cg12374136,0.0000193,0.00000695,2.774217517,0.005869062,gain,ns,0.0000366,0.0000118,3.102094793,0.002098384,pos,ns,0.011912764,0.00345973,3.443263905,0.000653772,pos,ns,3.184573416,-0.000407782,0.00011898,-3.427318995,0.000691889,neg,ns,0.575315608,Psd2,Psd2_Exon,18,36006091,36006140,36006091,36006092,50,+,CGTGGCTGGAAGAAATTCTACGCAGTGCTCAAAGGGACCATCCTGTACCT,"Exon (Psd2-201/Psd2, exon 11 of 15)",18,35964830,36014712,49883,1,Psd2-201,41261,Psd2-201;Psd2-205;Psd2-206;Psd2-204;Psd2-203;Psd2-202,Psd2;Psd2;Psd2;Psd2;Psd2;Psd2,0;0;0;0;0;19072,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,29,74002,ENSMUSG00000024347,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18855,cg18567986,-0.00000924,0.00000308,-3.002460186,0.002895947,loss,ns,0.0000162,0.00000523,3.101346565,0.002103532,pos,ns,0.006012694,0.001531641,3.925654339,0.000106614,pos,ns,3.972184831,-0.000128826,0.0000527,-2.445767475,0.015010247,neg,ns,0.936389296,Ppip5k2,Ppip5k2_Exon,1,97721191,97721240,97721191,97721192,50,-,CGTCTTCGACGCCCAGTACCCACACCACTGGTATAATGCAGCCAGGTACC,"Exon (Ppip5k2-202/Ppip5k2, exon 25 of 31)",1,97706048,97770411,64364,2,Ppip5k2-201,49171,Ppip5k2-201;Ppip5k2-202;Ppip5k2-205;Ppip5k2-207;Ppip5k2-206,Ppip5k2;Ppip5k2;Ppip5k2;Ppip5k2;Ppip5k2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,10,227399,ENSMUSG00000040648,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25103,cg14505366,0.00000578,0.00000386,1.495557946,0.135786188,gain,ns,-0.0000204,0.00000657,-3.101256674,0.002104152,neg,ns,0.001055193,0.001923356,0.54862062,0.583660723,pos,ns,0.233839531,-0.000264024,0.0000661,-3.991651605,0.000082,neg,ns,0.921374004,Fgfr2,Fgfr2_threeUTR,7,132982425,132982474,132982425,132982426,50,+,CGACCAATTATAGTTTATGGAGTAAAATATTACAAGAGTTTCCGGGGAGA,3' UTR,7,130162451,133123350,2960900,2,Fgfr2-217,140876,Fgfr2-217;Zranb1-202;Zranb1-205;Zranb1-201;Zranb1-204;Zranb1-203,Fgfr2;Zranb1;Zranb1;Zranb1;Zranb1;Zranb1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,9,79,14183,ENSMUSG00000030849,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20572,cg13647131,-0.0000367,0.0000135,-2.719691937,0.006902751,loss,ns,0.000071,0.0000229,3.100797987,0.002107314,pos,ns,0.027090909,0.006709884,4.037462869,0.0000682,pos,ns,4.166521952,-0.000708003,0.000230752,-3.068237692,0.002343333,neg,ns,0.400883536,Gosr2,Gosr2_Intron,11,103722008,103722057,103722008,103722009,50,-,CGCCTCTGGGCAGAGAAAGCAATTTCAGAAATGACATGTTGCCAACAAGC,"Intron (C130046K22Rik-201/C130046K22Rik-201, intron 2 of 2)",11,103676849,103697898,21050,2,Gosr2-201,-24159,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,56494,ENSMUSG00000020946,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24498,cg02371571,0.000023,0.0000132,1.735797389,0.0835933,gain,ns,0.0000698,0.0000225,3.100653041,0.002108315,pos,ns,0.008664891,0.006593804,1.314095825,0.189785499,pos,ns,0.721736975,-0.0000124,0.00022676,-0.054666532,0.956439347,neg,ns,0.608998764,Kcna1,Kcna1_Exon,6,126642461,126642510,126642509,126642510,50,-,CCCTTACCAAGCGGATGACCCTGAGGATGGCCAGGGAGGTGGCCTGCTCG,"Exon (Kcna1-201/Kcna1, exon 2 of 2)",6,126640397,126644796,4400,2,Kcna1-201,2286,Kcna1-201;Kcna1-202;Kcna1-203,Kcna1;Kcna1;Kcna1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,12,16485,ENSMUSG00000047976,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
24510,cg10698964,-0.00000603,0.00000181,-3.328068433,0.000979843,loss,ns,0.00000954,0.00000308,3.100589449,0.002108754,pos,ns,0.003159719,0.000901399,3.505351602,0.000523269,pos,ns,3.281275272,-0.0000718,0.000031,-2.314869767,0.021273032,neg,ns,0.05197251,Gabpb1,Gabpb1_fiveUTR,2,126675299,126675348,126675347,126675348,50,-,GAAGAGATCAACTTCCACATCCGGTGGTAACAGGGCCCTACACAGACCCG,Promoter (<=1kb),2,126652326,126675339,23014,2,Gabpb1-208,0,Gabpb1-206;Gabpb1-205;Gabpb1-204;Gabpb1-201;Gabpb1-203;Gabpb1-202;Gabpb1-208;Gabpb1-207,Gabpb1;Gabpb1;Gabpb1;Gabpb1;Gabpb1;Gabpb1;Gabpb1;Gabpb1,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,7,12,14391,ENSMUSG00000027361,mapped to different genes,2,126674561,126675949,1389,*,1389,168,0.699064075,0.9905509,0.120950324,2.65E-142,CpGisland,TRUE,U1,Pr-A
1803,cg25580139,-0.0000601,0.00000635,-9.466420496,7.63E-19,loss,yes,0.0000334,0.0000108,3.099213457,0.002118273,pos,ns,0.009623558,0.00316119,3.044283033,0.002532245,pos,ns,2.596494274,0.0000827,0.000108713,0.760665092,0.447435306,pos,ns,0.142036701,Dll1,Dll1_Promoter,17,15377029,15377078,15377029,15377030,50,-,CGAGGCTGAATCAGTGGCTCTTTGTGCGCTCAGCTGTATGGTAATGCAGA,Promoter (<=1kb),17,15374794,15376872,2079,2,Dll1-205,-206,Dll1-201;Dll1-203;Dll1-202;Dll1-205,Dll1;Dll1;Dll1;Dll1,-1053;-2957;-1929;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,9,9,13388,ENSMUSG00000014773,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13826,cg08634813,-0.0000155,0.00000688,-2.251333966,0.0250645,loss,ns,0.0000362,0.0000117,3.098523286,0.002123063,pos,ns,-0.000544685,0.003426203,-0.158976239,0.873791114,neg,ns,0.058592376,-0.0000397,0.000117827,-0.337003392,0.736342386,neg,ns,0.801715993,Slitrk3,Slitrk3_Exon,3,73048527,73048576,73048527,73048528,50,-,CGAGGTAATCCGGCTTGGTTTGAAGTTTGGCCCTTAACTCGAGGTAATCA,"Exon (Slitrk3-202/Slitrk3, exon 2 of 2)",3,73047265,73056943,9679,2,Slitrk3-202,8367,Slitrk3-202;Slitrk3-201,Slitrk3;Slitrk3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,386750,ENSMUSG00000048304,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4588,cg07690060,0.000119643,0.00000714,16.76571346,2.35E-45,gain,yes,-0.0000376,0.0000121,-3.097530739,0.002129968,neg,ns,-0.000303827,0.003551758,-0.085542789,0.9318851,neg,ns,0.030637632,-0.000186484,0.000122145,-1.52674632,0.127843717,neg,ns,0.159849414,Odf2,Odf2_fiveUTR,2,29890779,29890828,29890779,29890780,50,-,CGACTTGGACAGTAGAGGAGCGCCTCCCAAGTTTTCATCCAACTGCCAAC,5' UTR,2,29889221,29901107,11887,1,Odf2-212,1558,Odf2-212;Odf2-219;Odf2-211;Odf2-208;Odf2-205;Odf2-204;Odf2-225;Odf2-213;Odf2-217;Odf2-206;Odf2-203;Odf2-224;Odf2-218;Odf2-202;Odf2-201;Odf2-220;Odf2-207;Odf2-210;Odf2-209;Odf2-215,Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,8,18286,ENSMUSG00000026790,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U4,Pr-F
12221,cg09540833,-0.000000103,0.00000318,-0.032247484,0.974295441,loss,ns,0.0000167,0.00000541,3.096716349,0.00213565,pos,ns,0.003955669,0.00158402,2.497233552,0.013035066,pos,ns,1.884886763,-0.0000377,0.0000545,-0.692244766,0.489301815,neg,ns,0.940568758,Iqch,Iqch_Intron,9,63523689,63523738,63523737,63523738,50,-,ATAGCAGCCCCCACATAATGACTTTATTTGCTTAATCCCCAAATTAAACG,"Intron (Gm16759-201/Gm16759-201, intron 3 of 4)",9,63421455,63602493,181039,2,Iqch-201,78755,Iqch-201;Iqch-203;Iqch-204;Iqch-202;Iqch-206,Iqch;Iqch;Iqch;Iqch;Iqch,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,22,78250,ENSMUSG00000037801,mapped to different genes,9,63523737,63523798,62,*,62,7,0.548387097,1.522807018,0.112903226,0.00000583,CpGisland,TRUE,NA,NRS
5598,cg13983146,0.00000304,0.00000469,0.647221892,0.517967315,gain,ns,-0.0000247,0.00000798,-3.096562292,0.002136726,neg,ns,-0.004975114,0.002336454,-2.129343962,0.034013568,neg,ns,1.468347806,0.00000615,0.0000804,0.076489254,0.939079204,pos,ns,0.826245224,Apc,Apc_Exon,18,34298681,34298730,34298729,34298730,50,-,AAGAGAGGCAGGCGTGAAATCCGAGTCCTTCATCTTTTGGAACAGATACG,"Exon (Apc-209/Apc, exon 8 of 14)",18,34220924,34313506,92583,1,Apc-209,77757,Apc-209;Apc-203;Apc-202;Apc-207;Apc-205;Apc-206,Apc;Apc;Apc;Apc;Apc;Apc,0;0;0;0;0;-2531,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,7,11789,ENSMUSG00000005871,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3065,cg26972338,-0.0000295,0.0000169,-1.742194115,0.08246624,loss,ns,0.0000891,0.0000288,3.096432542,0.002137633,pos,ns,0.002970085,0.00842689,0.352453321,0.724737819,pos,ns,0.139819075,0.000624628,0.0002898,2.155375617,0.031901989,pos,ns,0.480268598,Pou3f2,Pou3f2_Promoter,4,22496436,22496485,22496436,22496437,50,+,CGTGTTCAGAGAAAAGCAAAACACATTATTTTAATAGTCTGATATGCAAA,Promoter (8-9kb),4,22482780,22488366,5587,2,Pou3f2-201,-8070,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,18,18992,ENSMUSG00000095139,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
26414,cg06303875,0.0000908,0.00000643,14.1323154,2.41E-35,gain,yes,-0.0000338,0.0000109,-3.096422826,0.002137701,neg,ns,-0.002104418,0.003199444,-0.657744941,0.511190141,neg,ns,0.29141753,0.00030914,0.000110029,2.809629724,0.005275041,pos,ns,0.17639173,Cdx2,Cdx2_Promoter,5,147307291,147307340,147307339,147307340,50,+,AGACTCTATTAGTAATGACACAGACACCAATGGTTGGAGACGTCGAGGCG,Promoter (<=1kb),5,147300805,147307270,6466,2,Cdx2-201,-21,Cdx2-201,Cdx2,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,7,12591,ENSMUSG00000029646,conserved gene and region,5,147307331,147307436,106,*,106,9,0.632075472,0.851785714,0.08490566,0.0000015,CpGisland,TRUE,U13,Hc-P
2914,cg19508323,0.00013604,0.00000768,17.7223709,5.04E-49,gain,yes,-0.0000404,0.000013,-3.096147091,0.00213963,neg,ns,-0.00200236,0.00382052,-0.52410681,0.60057877,neg,ns,0.221430024,0.000228218,0.000131387,1.736984657,0.083383169,pos,ns,0.681564777,Ehbp1,Ehbp1_Intron,11,22053181,22053230,22053229,22053230,50,-,TTCCAACTCTGCATGGATGAGCACACTGTTCAATAGTGCTGGCTCACACG,"Intron (Ehbp1-201/Ehbp1, intron 20 of 23)",11,22005828,22285838,280011,2,Ehbp1-201,232608,Ehbp1-201;Ehbp1-202;Ehbp1-207,Ehbp1;Ehbp1;Ehbp1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,34,45,216565,ENSMUSG00000042302,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6712,cg12780058,0.0000231,0.00000762,3.033300872,0.002623449,gain,ns,-0.0000401,0.0000129,-3.094180499,0.002153431,neg,ns,-0.012294758,0.003792384,-3.241960384,0.001316354,neg,ns,2.880627278,0.000272813,0.00013042,2.091805433,0.037269321,pos,ns,0.813161315,Dennd1a,Dennd1a_Intron,2,38156918,38156967,38156918,38156919,50,+,CGTGTTGGGTCTGCATTACTTCCGTGACAGAAAGAAAGGCTTCTTCTGTA,"Intron (Dennd1a-201/Dennd1a, intron 3 of 21)",2,37798991,38287375,488385,2,Dennd1a-201,130408,Dennd1a-201;Dennd1a-207;Dennd1a-210;Dennd1a-204;Dennd1a-202;Dennd1a-209;Dennd1a-208;Dennd1a-205,Dennd1a;Dennd1a;Dennd1a;Dennd1a;Dennd1a;Dennd1a;Dennd1a;Dennd1a,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,46,227801,ENSMUSG00000035392,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
326,cg14383707,0.0000501,0.000025,2.000552156,0.046312481,gain,ns,0.000131624,0.0000425,3.093953648,0.002155028,pos,ns,0.002202347,0.012463441,0.176704563,0.859855844,pos,ns,0.065574353,-0.000134501,0.000428617,-0.313803292,0.753881498,neg,ns,0.447220282,Klhl29,Klhl29_Intron,12,5119544,5119593,5119592,5119593,50,+,TGCTGCTTGTGCTTTATAATGATTCTACCAGAGGAAGTTTATTTATATCG,"Intron (Klhl29-201/Klhl29, intron 5 of 13)",12,5077472,5375682,298211,2,Klhl29-201,256089,Klhl29-201;Klhl29-202,Klhl29;Klhl29,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,23,208439,ENSMUSG00000020627,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8102,cg26192546,-0.0000026,0.00000918,-0.282616119,0.777659729,loss,ns,0.0000482,0.0000156,3.091848618,0.002169901,pos,ns,0.003831518,0.004571366,0.838155996,0.402588868,pos,ns,0.395138238,0.000278554,0.000157209,1.77187253,0.077397988,pos,ns,0.170471625,Pax2,Pax2_Intergenic_upstream,19,44743759,44743808,44743807,44743808,50,+,TGACAAGACAATAACAACAGAAAAAGCTTTTAAAACCAATTTAGCACACG,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-12237,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
4099,cg21375168,-0.00000714,0.0000112,-0.636016889,0.525234687,loss,ns,0.0000589,0.0000191,3.091739388,0.002170676,pos,ns,0.013041876,0.005583995,2.335581632,0.02015059,pos,ns,1.695712237,-0.000451514,0.000192033,-2.351230905,0.019337284,neg,ns,0.659812988,Gm12070,Gm12070_Intergenic_downstream,11,26794282,26794331,26794330,26794331,50,+,ATTAAATTCATTTTTTATATTAACATGTTCACAAATATTATTGCATCTCG,Distal Intergenic,11,26786633,26787634,1002,1,Gm12070-201,7649,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,8,654472,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11504,cg08957869,0.0000412,0.00000458,8.98078008,2.67E-17,gain,yes,-0.0000241,0.00000779,-3.091709856,0.002170885,neg,ns,-0.001280841,0.002281485,-0.561406592,0.574926002,neg,ns,0.240388049,-0.0000159,0.0000785,-0.202287696,0.839824509,neg,ns,0.872329501,Nptn,Nptn_Exon,9,58618884,58618933,58618884,58618885,50,-,CGGCTCACCTTGGAGGACTCTGGGACTTACGAGTGCAGGGCCAGCAACGA,"Exon (Nptn-212/Nptn, exon 2 of 8)",9,58582240,58651318,69079,1,Nptn-212,36644,Nptn-212;Nptn-201;Nptn-213;Nptn-206;Nptn-203;Nptn-202;Nptn-211;Nptn-207;Nptn-204,Nptn;Nptn;Nptn;Nptn;Nptn;Nptn;Nptn;Nptn;Nptn,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,20,22,20320,ENSMUSG00000032336,conserved gene and region,9,58618678,58618932,255,*,255,20,0.6,0.879917184,0.078431373,1.96E-13,CpGisland,TRUE,NA,NRS
22921,cg24411035,0.000000789,0.00000562,0.140329488,0.888490801,gain,ns,0.0000295,0.00000955,3.091141619,0.002174918,pos,ns,0.006121128,0.002797193,2.188311056,0.029393007,pos,ns,1.531755977,-0.000102844,0.0000962,-1.069121608,0.285846646,neg,ns,0.924839274,Meis2,Meis2_Intergenic_upstream,2,116201598,116201647,116201646,116201647,50,+,CTGTGATTAATTGCTAGCATAGATCAGCATTATGTCTTTCCAGTGAATCG,Distal Intergenic,2,115863064,116065839,202776,2,Meis2-206,-135759,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,97,17536,ENSMUSG00000027210,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1005,cg17709058,0.00000977,0.00000269,3.632225509,0.000328706,gain,ns,-0.0000141,0.00000457,-3.090627456,0.002178573,neg,ns,-0.004203308,0.00133825,-3.140898823,0.001846781,neg,ns,2.733584666,0.000136453,0.000046,2.964939819,0.003262378,pos,ns,0.937283535,Greb1l,Greb1l_Exon,18,10560424,10560473,10560472,10560473,50,+,CAAACTGCTAACAGCAGTGATGACAAGCCTCTCTACTTTCTTACTGGACG,"Exon (Greb1l-201/Greb1l, exon 33 of 33)",18,10325179,10562940,237762,1,Greb1l-201,235245,Greb1l-201;Greb1l-204,Greb1l;Greb1l,0;6638,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,3,381157,ENSMUSG00000042942,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15637,cg20408384,0.0000546,0.0000241,2.269133028,0.023947196,gain,ns,-0.000126332,0.0000409,-3.089454156,0.002186935,neg,ns,0.077285587,0.011979817,6.451316345,4.26E-10,pos,ns,9.370759935,-0.002175328,0.000411985,-5.280115002,0.000000243,neg,yes,0.618660726,Nfib,Nfib_Intron,4,82495005,82495054,82495005,82495006,50,-,CGAATCAAAGGCATTCAGCAACTAGACAAAGAGGGTCTGATGCCAACCTC,"Intron (Nfib-201/Nfib, intron 2 of 11)",4,82290173,82505308,215136,2,Nfib-201,10254,Nfib-201;Nfib-203;Nfib-202;Nfib-205;Nfib-206;Nfib-204;Nfib-207;Nfib-209;Nfib-210;Nfib-208;Nfib-212;Nfib-211,Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,66,18028,ENSMUSG00000008575,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18073,cg09322656,-0.000006,0.00000308,-1.945999523,0.052558212,loss,ns,0.0000162,0.00000524,3.088811618,0.002191527,pos,ns,0.002197469,0.001534157,1.43236286,0.153047566,pos,ns,0.815173573,-0.000143537,0.0000528,-2.720587515,0.006884523,neg,ns,0.934799215,Pola1,Pola1_Intron,X,93497766,93497815,93497814,93497815,50,+,CAATCAGGAGACTCGGTGTCACACAAGGCTCTCTTGCAATGCAGCAGCCG,"Intron (Pola1-201/Pola1, intron 26 of 36)",20,93304767,93632155,327389,2,Pola1-201,134340,Pola1-201,Pola1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,59,62,18968,ENSMUSG00000006678,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15744,cg05579189,-0.0000621,0.0000105,-5.923607775,8.37E-09,loss,yes,0.000055,0.0000178,3.088592159,0.002193097,pos,ns,0.001308054,0.005214556,0.250846634,0.802098866,pos,ns,0.095772098,-0.000135367,0.000179328,-0.754858213,0.450907142,neg,ns,0.458245498,Zfp516,Zfp516_Intergenic_downstream,18,83116454,83116503,83116454,83116455,50,-,CGTGCAGACACACAAAAGAGCCTATTTGGACTGGCGTGTCAGCTCATCTT,Distal Intergenic,18,82987808,83001700,13893,1,Zfp516-205,128695,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,6,329003,ENSMUSG00000058881,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7494,cg12935350,0.000024,0.00000417,5.765436651,1.97E-08,gain,yes,-0.0000219,0.00000708,-3.087873784,0.002198245,neg,ns,-0.003415864,0.002075427,-1.645860243,0.100805977,neg,ns,0.996513717,0.000129178,0.0000714,1.809886991,0.071281624,pos,ns,0.897237754,Mrps9,Mrps9_Intron,1,42888875,42888924,42888875,42888876,50,+,CGGATGGGTTGCACGCAGCGAAGCTGTGGAAAATCTGTGCCTTTTAACTT,"Intron (Mrps9-201/Mrps9, intron 5 of 10)",1,42851233,42905682,54450,1,Mrps9-201,37642,Mrps9-201;Mrps9-202;Mrps9-203;Mrps9-204;Mrps9-206,Mrps9;Mrps9;Mrps9;Mrps9;Mrps9,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,12,69527,ENSMUSG00000060679,conserved gene and region,1,42888767,42888894,128,*,128,10,0.5703125,0.992248062,0.078125,0.000000662,CpGisland,TRUE,U10,Tr-S
20536,cg13026754,-0.00013189,0.0000168,-7.832528352,7.67E-14,loss,yes,-0.0000883,0.0000286,-3.087556226,0.002200524,neg,ns,0.021166413,0.008380797,2.525584677,0.012048736,pos,ns,1.919058494,-0.00148915,0.000288215,-5.166804205,0.000000427,neg,yes,0.552603704,Fam181a,Fam181a_Intron,12,103314019,103314068,103314019,103314020,50,-,CGGTGACAGTAGCCAAGTGTGCAAACTTGTCCCATTGTCCGCAGGCCAGG,"Intron (Fam181a-203/Fam181a, intron 1 of 1)",12,103310975,103317065,6091,1,Fam181a-203,3044,Fam181a-203;Fam181a-202;Fam181a-201,Fam181a;Fam181a;Fam181a,0;-885;-891,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,9,100504156,ENSMUSG00000096753,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21172,cg20894241,-0.00000563,0.0000125,-0.451226807,0.652141574,loss,ns,0.0000654,0.0000212,3.087457507,0.002201233,pos,ns,0.004092491,0.006205793,0.659462933,0.510088137,pos,ns,0.292354777,-0.00000357,0.000213417,-0.01673878,0.986655777,neg,ns,0.727071402,Gm17053,Gm17053_Intergenic_upstream,12,106626832,106626881,106626880,106626881,50,-,TGACAAATTTGCATCTCTTTGAATGTGACGCTTGAAAAAAGCCGGAGCCG,Distal Intergenic,12,106544837,106546326,1490,2,Gm17053-201,-80555,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,6,108167962,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U14,Hc-H
6836,cg12808985,0.0000712,0.0000127,5.590557483,4.97E-08,gain,yes,-0.0000668,0.0000216,-3.087214036,0.002202982,neg,ns,0.01998612,0.006342259,3.151261949,0.001784467,pos,ns,2.748491556,-0.001295182,0.00021811,-5.938210659,7.72E-09,neg,yes,0.295964801,Nr5a1,Nr5a1_Promoter,2,38718797,38718846,38718797,38718798,50,-,CGCTGCACCCCTTATCAGCCTGCTGCCAGATGTTCAGATCCGATGCCAAT,Promoter (4-5kb),2,38692660,38714542,21883,2,Nr5a1-201,-4304,Nr5a1-201;Nr6a1-202;Nr6a1-210;Nr6a1-201,Nr5a1;Nr6a1;Nr6a1;Nr6a1,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,3,7,26423,ENSMUSG00000026751,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
12480,cg20531262,-0.0000273,0.0000095,-2.87824411,0.004276814,loss,ns,0.0000498,0.0000161,3.08685796,0.002205543,pos,ns,-0.004667928,0.00472679,-0.987547158,0.324144631,neg,ns,0.489261167,0.000493484,0.000162554,3.035820056,0.002602265,pos,ns,0.756767441,Msra,Msra_Intron,14,64534088,64534137,64534088,64534089,50,+,CGGCTGTCAGTTTCACACCACCAAGCAGATTGTAATTGGCAGGATGAGGT,"Intron (Gm47202-201/Gm47202-201, intron 1 of 2)",14,64122625,64455903,333279,2,Msra-201,-78185,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,4,110265,ENSMUSG00000054733,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10212,cg24800098,0.000100005,0.00000717,13.93883421,1.28E-34,gain,yes,-0.0000376,0.0000122,-3.086675137,0.002206859,neg,ns,0.001251292,0.003570862,0.350417227,0.726263582,pos,ns,0.138905733,0.000277058,0.000122802,2.256139435,0.024758463,pos,ns,0.237000677,Hoxa11,Hoxa11_Exon,6,52244908,52244957,52244956,52244957,50,+,ACCTTATATGCTTATAAAACAGCATATAAAAATTTAACAGCGGTGCTGCG,Promoter (<=1kb),6,52242106,52245810,3705,2,Hoxa11-201,853,Hoxa10-201;Hoxa10-204;Hoxa11-201;Hoxa11-202,Hoxa10;Hoxa10;Hoxa11;Hoxa11,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,15,18,15396,ENSMUSG00000038210,conserved gene but different region,6,52244948,52245549,602,*,602,70,0.674418605,1.022616968,0.11627907,2.62E-58,CpGisland,TRUE,U13,Hc-P
681,cg00181698,0.0000991,0.0000431,2.299384323,0.022147627,gain,ns,-0.000225933,0.0000732,-3.085690833,0.002213955,neg,ns,0.082638804,0.021450816,3.852478374,0.000142109,pos,ns,3.847379613,-0.002745428,0.000737692,-3.721646322,0.000234981,neg,ns,0.374146151,Tab2,Tab2_Exon,10,7911091,7911140,7911091,7911092,50,-,CGGGCTTGAAAAAGATCAATTTCTTTGGTTAAGCAGTCAATGTCAATCTG,"Exon (Tab2-204/Tab2, exon 5 of 7)",10,7905653,7956230,50578,2,Tab2-204,45090,Tab2-204;Tab2-203;Tab2-202;Tab2-205,Tab2;Tab2;Tab2;Tab2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,68652,ENSMUSG00000015755,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2977,cg16423684,-0.00000012,0.00000182,-0.065664596,0.947687185,loss,ns,0.00000955,0.00000309,3.085511094,0.002215254,pos,ns,0.001865366,0.00090631,2.058198275,0.040406722,pos,ns,1.393546381,-0.0000152,0.0000312,-0.486625714,0.626867455,neg,ns,0.956002271,Lrmda,Lrmda_Intron,14,22241008,22241057,22241008,22241009,50,+,CGACAAGATTTGATCGATGGAGTCGTATGATGCCCTTGCCTTGTTTTATA,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,221296,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206,Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25271,cg21841556,-0.0000476,0.0000144,-3.315401939,0.001023731,loss,ns,-0.0000753,0.0000244,-3.084359888,0.002223585,neg,ns,0.040089084,0.007151733,5.605506079,4.59E-08,pos,ns,7.337913491,-0.000911533,0.000245948,-3.706208779,0.000249117,neg,ns,0.756120381,Pdik1l,Pdik1l_fiveUTR,4,134284496,134284545,134284496,134284497,50,+,CGTATTAGATCGTACTTTGGCTGGCTACTCACCATCTTCAAGGTCGAGGT,5' UTR,4,134275002,134287239,12238,2,Pdik1l-203,2694,Pdik1l-203;Pdik1l-201;Pdik1l-202;Pdik1l-206;Pdik1l-204;Pdik1l-205,Pdik1l;Pdik1l;Pdik1l;Pdik1l;Pdik1l;Pdik1l,0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,8,230809,ENSMUSG00000050890,conserved gene but different region,4,134284376,134284541,166,*,166,11,0.493975904,1.129251701,0.06626506,0.000000769,CpGisland,TRUE,U10,Tr-S
18039,cg24665462,-0.00000791,0.00000282,-2.807822483,0.005303983,loss,ns,0.0000148,0.00000479,3.083381556,0.002230688,pos,ns,0.000571557,0.001402426,0.407549095,0.683886039,pos,ns,0.165016262,-0.0000124,0.0000482,-0.257420433,0.797025017,neg,ns,0.936901387,Pola1,Pola1_Intron,X,93377896,93377945,93377896,93377897,50,+,CGTCAGCCACGGAGTTTAGTGACCTGATATTAGTAGGCAGGCTAATTGAA,"Intron (Pola1-201/Pola1, intron 35 of 36)",20,93304767,93632155,327389,2,Pola1-201,254210,Pola1-201,Pola1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,59,62,18968,ENSMUSG00000006678,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23569,cg23526544,-0.000000225,0.00000524,-0.042991985,0.9657356,loss,ns,-0.0000274,0.0000089,-3.083313245,0.002231184,neg,ns,-0.005082419,0.002606117,-1.95018883,0.052054705,neg,ns,1.283540009,0.000111195,0.0000896,1.24067806,0.215662829,pos,ns,0.825984565,Ctdspl,Ctdspl_Exon,9,119033565,119033614,119033565,119033566,50,-,CGAGTTCCTCCAGAGGATGGGGCAGCTTTTTGAATGTGTGCTCTTTACTG,"Exon (Ctdspl-201/Ctdspl, exon 6 of 8)",9,118926453,119043998,117546,1,Ctdspl-201,107112,Ctdspl-201;Ctdspl-202;Ctdspl-204;Ctdspl-203,Ctdspl;Ctdspl;Ctdspl;Ctdspl,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,7,69274,ENSMUSG00000047409,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4775,cg05656590,0.0000822,0.00000844,9.740498243,9.83E-20,gain,yes,-0.0000442,0.0000143,-3.083192687,0.002232061,neg,ns,-0.001374674,0.004199078,-0.327375136,0.743605131,neg,ns,0.128657622,0.0000214,0.000144406,0.148187937,0.882290794,pos,ns,0.097238197,Mecom,Mecom_fiveUTR,3,30509785,30509834,30509833,30509834,50,+,TTATCACTTTGATTTGGAGATCTTGTCAGATGGCAATCGCCGAGGAGGCG,Promoter (<=1kb),3,29965456,30509822,544367,2,Mecom-207,0,Mecom-212;Mecom-213;Mecom-207;Mecom-208;Mecom-211;Mecom-209,Mecom;Mecom;Mecom;Mecom;Mecom;Mecom,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,13,80,14013,ENSMUSG00000027684,conserved gene but different region,3,30509822,30509917,96,*,96,11,0.739583333,1.005714286,0.114583333,2.34E-09,CpGisland,TRUE,U3,Pr-B
17513,cg11535535,-0.000017,0.0000044,-3.857734844,0.000139225,loss,ns,0.0000231,0.00000748,3.08301524,0.002233353,pos,ns,0.001431358,0.002191849,0.653036831,0.514216548,pos,ns,0.288853951,-0.0000806,0.0000754,-1.069345356,0.285746011,neg,ns,0.895291438,Gm2497,Gm2497_Intergenic_downstream,9,90693036,90693085,90693036,90693037,50,+,CGCAAAGTGCAATGAAGTGGCTGTGACCATTGTGTAGACACCACCTCTCT,Distal Intergenic,9,90732924,90733524,601,2,Gm2497-201,40439,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,9,100039925,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6244,cg01556289,-0.000115193,0.000025,-4.600540836,0.00000615,loss,ns,0.000131122,0.0000425,3.082473668,0.002237298,pos,ns,0.004893107,0.012462172,0.392636776,0.69485761,pos,ns,0.158104182,-0.000325635,0.000428573,-0.759811393,0.447944759,neg,ns,0.7147577,Tenm2,Tenm2_Intron,11,36561348,36561397,36561348,36561349,50,+,CGATGGAGTATTTTGCCAGCAGCTCTGTCTTGCAACATGCAATCTGTTTT,"Intron (Tenm2-202/Tenm2, intron 4 of 30)",11,36006656,37235882,1229227,2,Tenm2-202,674485,Tenm2-202;Tenm2-208;Tenm2-201;Tenm2-204;Tenm2-205,Tenm2;Tenm2;Tenm2;Tenm2;Tenm2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,47,84,23964,ENSMUSG00000049336,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24677,cg25230010,-0.0000205,0.00000853,-2.408550986,0.016599245,loss,ns,-0.0000446,0.0000145,-3.081098757,0.002247342,neg,ns,0.01481333,0.0042448,3.489759094,0.000553529,pos,ns,3.256859253,-0.000581291,0.000145978,-3.982035404,0.0000852,neg,ns,0.884628541,Lrp1,Lrp1_Exon,10,127582690,127582739,127582690,127582691,50,-,CGGCAGGCTCAGGACAGGTCTGTTCGTCAGAGCCGTCCCCACAATCCTTC,"Exon (Lrp1-207/Lrp1, exon 2 of 3)",10,127538161,127621148,82988,2,Lrp1-201,38409,Lrp1-201;Lrp1-206;Lrp1-207;Lrp1-204,Lrp1;Lrp1;Lrp1;Lrp1,0;-805;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,8,16971,ENSMUSG00000040249,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16358,cg02261822,0.000117359,0.0000127,9.245786638,3.89E-18,gain,yes,-0.0000664,0.0000216,-3.081094015,0.002247377,neg,ns,-0.009774265,0.006317539,-1.547163481,0.122844065,neg,ns,0.91064582,0.000105511,0.00021726,0.485645994,0.627561245,pos,ns,0.712939624,Nfix,Nfix_Exon,8,84771884,84771933,84771884,84771885,50,-,CGACTTGTAGAGCCGCTCCCCATCAGTACTTTCCAGGGGGATCCCCTTAA,"Exon (Nfix-204/Nfix, exon 2 of 11)",8,84704712,84773396,68685,2,Nfix-204,1463,Nfix-204;Nfix-201;Nfix-202;Nfix-203;Nfix-205,Nfix;Nfix;Nfix;Nfix;Nfix,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,20,49,18032,ENSMUSG00000001911,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
18124,cg01761801,-0.00001,0.0000098,-1.023314978,0.306956821,loss,ns,0.0000513,0.0000167,3.080124819,0.002254483,pos,ns,-0.005183754,0.004878113,-1.062655628,0.288765255,neg,ns,0.539455063,0.000276267,0.000167758,1.646817823,0.100608794,pos,ns,0.887191914,Gm6987,Gm6987_Promoter,X,94022470,94022519,94022470,94022471,50,+,CGCTTTCACTTAAAACCATTCTGAGGTAGACCTTTTAATAGAAAGTGACA,Promoter (1-2kb),20,94023860,94024626,767,1,Gm6987-201,-1341,Gm6987-201,Gm6987,-1341,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,2,629591,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1709,cg06540487,0.000157928,0.0000126,12.56744911,1.48E-29,gain,yes,-0.0000657,0.0000213,-3.079739305,0.002257315,neg,ns,-0.010286185,0.006254443,-1.644620436,0.101061735,neg,ns,0.995413248,0.000451994,0.00021509,2.101421407,0.036410897,pos,ns,0.657569776,Ss18,Ss18_Intron,18,14654925,14654974,14654973,14654974,50,+,CAAAGCAGTTTTGTCATCAACAATCTAGTATCCCTTGAGCCCCCATGTCG,"Intron (Ss18-202/Ss18, intron 4 of 9)",18,14624198,14682766,58569,2,Ss18-202,27792,Ss18-202;Ss18-201;Ss18-210;Ss18-203;Ss18-206;Ss18-205;Ss18-204;Ss18-209;Ss18-211;Ss18-208,Ss18;Ss18;Ss18;Ss18;Ss18;Ss18;Ss18;Ss18;Ss18;Ss18,0;0;0;0;0;0;0;0;0;15812,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,10,268996,ENSMUSG00000037013,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5674,cg06492554,0.000106485,0.0000219,4.868933286,0.00000179,gain,yes,-0.000114424,0.0000372,-3.079659476,0.002257902,neg,ns,0.083816863,0.010885077,7.700162701,1.84E-13,pos,yes,12.73526697,-0.001989853,0.000374337,-5.315673139,0.000000204,neg,yes,0.376130468,Mapkap1,Mapkap1_Intron,2,34535172,34535221,34535220,34535221,50,+,AGCGTCTGCAAGCAATTTGGATGCTTGCCAGGAGTCATTGTTCACCCTCG,"Intron (Mapkap1-204/Mapkap1, intron 6 of 10)",2,34406862,34623475,216614,1,Mapkap1-204,128310,Mapkap1-204;Mapkap1-202;Mapkap1-201;Mapkap1-209;Mapkap1-203;Mapkap1-207,Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,59,227743,ENSMUSG00000038696,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12848,cg17704721,-0.00000197,0.00000582,-0.339190847,0.734695622,loss,ns,0.0000304,0.00000988,3.079345085,0.002260215,pos,ns,0.016399119,0.002895187,5.664270227,3.37E-08,pos,ns,7.472220829,-0.000417225,0.0000996,-4.190472729,0.0000363,neg,ns,0.896792378,Rsrc1,Rsrc1_Intron,3,67309853,67309902,67309901,67309902,50,+,AGCTTAGTGATCCTGAAACTCCATGTGTCTCACTGAAATCTGTGCGGACG,"Intron (Rsrc1-206/Rsrc1, intron 7 of 9)",3,66981390,67356559,375170,1,Rsrc1-206,328463,Rsrc1-206;Rsrc1-203;Rsrc1-202;Rsrc1-201;Rsrc1-209;Rsrc1-205,Rsrc1;Rsrc1;Rsrc1;Rsrc1;Rsrc1;Rsrc1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,37,66880,ENSMUSG00000034544,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15492,cg07267732,-0.0000032,0.0000139,-0.230496003,0.817858404,loss,ns,0.0000726,0.0000236,3.079219875,0.002261136,pos,ns,-0.000643286,0.006911817,-0.093070438,0.925907722,neg,ns,0.033432294,0.000310546,0.000237697,1.306477749,0.192358592,pos,ns,0.765919305,Gm7503,Gm7503_Intergenic_upstream,18,81166369,81166418,81166417,81166418,50,+,ATACAGCGCTCTTGAGCACTGCAAAGACAATTAGTCATATTTGTATGCCG,Distal Intergenic,18,80997003,80997383,381,2,Gm7503-201,-168986,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,17,21,665124,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
440,cg00595156,0.000006,0.00000345,1.737951006,0.083212456,gain,ns,-0.0000181,0.00000587,-3.079155872,0.002261607,neg,ns,-0.001031536,0.001718672,-0.600193524,0.548815759,neg,ns,0.260573427,-0.0000474,0.0000591,-0.801332987,0.423552671,neg,ns,0.923046994,Snx9,Snx9_Exon,17,5920590,5920639,5920638,5920639,50,-,TGGGGAAGTTCACCAAGGCCATGGATGACGGCGTGAAGGAGCTGCTGACG,"Exon (Snx9-201/Snx9, exon 12 of 18)",17,5841329,5931954,90626,1,Snx9-201,79261,Snx9-201,Snx9,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,66616,ENSMUSG00000002365,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17335,cg20706526,0.000048,0.00000752,6.379099649,6.47E-10,gain,yes,-0.0000393,0.0000128,-3.077616785,0.002272967,neg,ns,-0.003124759,0.003741594,-0.835141206,0.404281371,neg,ns,0.39331627,0.0000509,0.000128673,0.395252845,0.692928135,pos,ns,0.854749288,Agap1,Agap1_Intron,1,89751208,89751257,89751256,89751257,50,+,CTGTGCAGAATGGCAGCTCATTGGCGGTACTTAAGGATACATTATCCCCG,"Intron (Agap1-201/Agap1, intron 11 of 17)",1,89454806,89897617,442812,1,Agap1-201,296402,Agap1-201;Agap1-204;Agap1-202,Agap1;Agap1;Agap1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,29,347722,ENSMUSG00000055013,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8231,cg12942661,-0.00000807,0.0000031,-2.605320755,0.00962157,loss,ns,-0.0000162,0.00000526,-3.076915392,0.002278161,neg,ns,-0.004153573,0.001541678,-2.69419005,0.007440429,neg,ns,2.128402032,-0.0000241,0.000053,-0.454522133,0.649771166,neg,ns,0.90025983,Ebf1,Ebf1_Exon,11,44883901,44883950,44883901,44883902,50,+,CGGAGGGCTCGGAGGCTTGACCCCTCGGAAGGTACGCCCTCTTATCTGGA,"Exon (Ebf1-203/Ebf1, exon 8 of 16)",11,44617317,45004995,387679,1,Ebf1-203,266584,Ebf1-203;Ebf1-202;Ebf1-201,Ebf1;Ebf1;Ebf1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,15,80,13591,ENSMUSG00000057098,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23603,cg09722803,-0.00000594,0.0000171,-0.347270982,0.728623393,loss,ns,-0.0000894,0.0000291,-3.076589335,0.002280579,neg,ns,-0.026988732,0.008515941,-3.169201523,0.001681166,neg,ns,2.774389406,0.000419141,0.000292862,1.431185419,0.1533844,pos,ns,0.623700716,Vps18,Vps18_Intergenic_downstream,2,119300809,119300858,119300809,119300810,50,-,CGAGACACTTTCACAGGCGGAAATTCCCAGAGGTCAGAGGAGGGAAACGG,Downstream (2-3kb),2,119288787,119298326,9540,1,Vps18-203,12071,Vps18-201;Vps18-203,Vps18;Vps18,0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,3,4,228545,ENSMUSG00000034216,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5303,cg09672745,-0.00000188,0.00000341,-0.550366355,0.582464472,loss,ns,0.0000178,0.00000579,3.076483359,0.002281366,pos,ns,0.004849863,0.001696847,2.858162224,0.004549503,pos,ns,2.342036051,-0.000055,0.0000584,-0.943042802,0.346393365,neg,ns,0.939770579,Atxn7l1,Atxn7l1_Exon,12,33364461,33364510,33364509,33364510,50,+,AGCAACATTGGGGCTGCCTGGGTGTCAACTCTGGAGAGCGTAGCACCCCG,"Exon (Atxn7l1-212/Atxn7l1, exon 10 of 13)",12,33147754,33373030,225277,1,Atxn7l1-212,216707,Atxn7l1-212;Atxn7l1-204;Atxn7l1-202;Atxn7l1-213;Atxn7l1-205;Atxn7l1-209,Atxn7l1;Atxn7l1;Atxn7l1;Atxn7l1;Atxn7l1;Atxn7l1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,24,380753,ENSMUSG00000020564,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10080,cg16995119,0.000144538,0.0000137,10.57092337,1.66E-22,gain,yes,-0.0000715,0.0000232,-3.076473736,0.002281437,neg,ns,0.019423002,0.006805268,2.854112843,0.00460637,pos,ns,2.336641159,-0.000728564,0.000234033,-3.113087227,0.002024078,neg,ns,0.18121392,Gm28308,Gm28308_Exon,6,52164510,52164559,52164510,52164511,50,+,CGAGTGTGAAAGCGTCGAGGTCTTGATTGATGAACTTTGAAATGTATCAG,"Exon (Hoxa2-201/Hoxa2, exon 1 of 2)",6,52163359,52213339,49981,2,Gm28308-201,48780,Gm28308-201;Hoxa2-201;Hoxa3-201,Gm28308;Hoxa2;Hoxa3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,30,103,,NA,mapped to different genes,6,52164510,52164668,159,*,159,10,0.496855346,1.023166023,0.062893082,0.00000467,CpGisland,TRUE,U3,Pr-B
23660,cg00632889,-0.000014,0.00000674,-2.084756883,0.037909493,loss,ns,0.0000352,0.0000114,3.076364792,0.002282246,pos,ns,0.002866358,0.003354087,0.854586514,0.393440033,pos,ns,0.405121452,-0.000168054,0.000115347,-1.456941608,0.146144651,neg,ns,0.853429739,Gm4332,Gm4332_Intergenic_upstream,3,119567823,119567872,119567823,119567824,50,-,CGATTTCATTGCCCTATTGAGCCAAAGGCAAAGAGAGGCAACAAGAGATA,Distal Intergenic,3,119709516,119709861,346,1,Gm4332-201,-141693,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,100043278,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6780,cg00616272,-0.0000448,0.0000111,-4.02378554,0.000072,loss,ns,0.0000581,0.0000189,3.074177509,0.002298541,pos,ns,0.009866605,0.005535908,1.782292006,0.075680267,pos,ns,1.121017345,-0.000396507,0.000190379,-2.082718576,0.038096362,neg,ns,0.776520897,Dgkb,Dgkb_Intron,12,38435983,38436032,38436031,38436032,50,-,ATTAAGAAGTGACTGACATAAATTAGGCAGATTTCAGAAGCCACAGGCCG,"Intron (Dgkb-203/Dgkb, intron 21 of 24)",12,37880337,38632119,751783,1,Dgkb-203,555646,Dgkb-203;Dgkb-206;Dgkb-201,Dgkb;Dgkb;Dgkb,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,4,217480,ENSMUSG00000036095,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22278,cg08749684,0.000106421,0.00002,5.307873728,0.000000212,gain,yes,-0.000104702,0.0000341,-3.073891025,0.002300683,neg,ns,-0.029467108,0.009978932,-2.952932161,0.003388323,neg,ns,2.470015136,0.001199792,0.000343175,3.496154975,0.000540924,pos,ns,0.529631942,Tead1,Tead1_Exon,7,112842031,112842080,112842079,112842080,50,-,ACCCTGCAGGTGTCTAGTCACATTCAGGTTCTTGCCAGAAGGAAATCTCG,"Exon (Tead1-203/Tead1, exon 4 of 12)",7,112679318,112899459,220142,1,Tead1-203,162713,Tead1-203;Tead1-216;Tead1-217;Tead1-201;Tead1-204;Tead1-214;Tead1-206;Tead1-202;Tead1-211;Tead1-207;Tead1-210;Tead1-212;Tead1-208;Tead1-209;Tead1-215,Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,16,21676,ENSMUSG00000055320,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
16870,cg19511760,-0.0000152,0.00000873,-1.737090924,0.083364382,loss,ns,0.0000456,0.0000148,3.073626374,0.002302663,pos,ns,0.016458411,0.004344727,3.78813504,0.000182304,pos,ns,3.739204281,-0.000515839,0.000149415,-3.452393193,0.000632841,neg,ns,0.867476903,Ythdc1,Ythdc1_threeUTR,5,86830555,86830604,86830555,86830556,50,+,CGTCGACCAGAAGATTATGATATTCATAACAGCAGAAAGAAACCAAGGAT,3' UTR,5,86804221,86836654,32434,1,Ythdc1-202,26334,Ythdc1-202;Ythdc1-203;Ythdc1-208;Ythdc1-201;Ythdc1-207;Ythdc1-206;Ythdc1-205;Ythdc1-204,Ythdc1;Ythdc1;Ythdc1;Ythdc1;Ythdc1;Ythdc1;Ythdc1;Ythdc1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,12,17,231386,ENSMUSG00000035851,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24769,cg08825623,-0.00000429,0.00000613,-0.700078923,0.484403057,loss,ns,0.000032,0.0000104,3.073148724,0.002306242,pos,ns,0.004550027,0.003049017,1.492292999,0.136639313,pos,ns,0.864424332,-0.000211629,0.000104855,-2.018288945,0.044422132,neg,ns,0.706721124,Csmd2,Csmd2_Exon,4,128395070,128395119,128395070,128395071,50,+,CGCCTCTGCCAAGGTGTGTTGGTAGGTGGTCACGTGCTTTCATTTTGCTT,"Exon (Csmd2-203/Csmd2, exon 21 of 25)",4,127988044,128419617,431574,1,Csmd2-203,407026,Csmd2-203;Csmd2-205,Csmd2;Csmd2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,9,329942,ENSMUSG00000028804,conserved gene and region,4,128394921,128395171,251,*,251,18,0.641434263,0.699380805,0.071713147,1.82E-11,CpGisland,TRUE,U15,NS
14121,cg21229874,0.0000157,0.00000235,6.654256685,1.29E-10,gain,yes,-0.0000123,0.000004,-3.072986773,0.002307456,neg,ns,0.00160584,0.001172019,1.370148611,0.171631966,pos,ns,0.765401824,-0.0000758,0.0000403,-1.879728452,0.061082829,neg,ns,0.019022814,Hoxd10,Hoxd10_Promoter,2,74691820,74691869,74691820,74691821,50,-,CGTGACCCGAGAGGAGGCTGCGGCTCAAGGCCATTTTCAAATCTCATTGG,Promoter (<=1kb),2,74691924,74695105,3182,1,Hoxd10-201,-104,Hoxd10-201;Hoxd11-201,Hoxd10;Hoxd11,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,2,24,15430,ENSMUSG00000050368,conserved gene but different region,2,74691476,74691841,366,*,366,33,0.680327869,0.780232558,0.090163934,7.59E-24,CpGisland,TRUE,U13,Hc-P
25444,cg24347950,-0.0000213,0.0000096,-2.220239948,0.0271254,loss,ns,0.0000501,0.0000163,3.072942745,0.002307787,pos,ns,0.014300503,0.00477983,2.991843821,0.002995599,pos,ns,2.523516255,-0.000348847,0.000164378,-2.122228104,0.034611264,neg,ns,0.214644627,Zfp281,Zfp281_Exon,1,136625400,136625449,136625448,136625449,50,-,GCAGAGATGGAACCCACCTTTCCCCAGGGTATGGTTATGTTCAACCACCG,Promoter (<=1kb),1,136624901,136630053,5153,1,Zfp281-201,499,Zfp281-201;Zfp281-202,Zfp281;Zfp281,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,7,226442,ENSMUSG00000041483,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
9818,cg25303549,-0.0000068,0.0000136,-0.500507637,0.617072822,loss,ns,0.0000709,0.0000231,3.072880611,0.002308253,pos,ns,0.014960484,0.006764163,2.211727473,0.027714618,pos,ns,1.557291109,-0.000334515,0.000232619,-1.438038992,0.151431705,neg,ns,0.517364446,Frmd7,Frmd7_Exon,X,50942669,50942718,50942717,50942718,50,+,CTTCTGGGAATCATCCAAAAACTGCACTTTTAAATGTAGCATTCTCAGCG,Promoter (<=1kb),20,50895180,50942710,47531,2,Frmd7-201,0,Frmd7-201;Frmd7-202,Frmd7;Frmd7,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,385354,ENSMUSG00000036131,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1673,cg00084503,-0.0000123,0.0000223,-0.553230508,0.580504328,loss,ns,0.000116458,0.0000379,3.071816767,0.002316248,pos,ns,0.011543572,0.011106877,1.039317564,0.299467004,pos,ns,0.523651022,0.0000875,0.000381965,0.229203714,0.818861728,pos,ns,0.797819757,Gm26993,Gm26993_Intergenic_upstream,19,14240314,14240363,14240314,14240315,50,-,CGACTGCATTGGTTTCGGAGCCAAATCCCAAGGGCTCCAAAGATGGATCA,Distal Intergenic,19,14017583,14018371,789,2,Gm26993-201,-221992,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,8,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6598,cg17744123,-0.000011,0.00000774,-1.423233665,0.155674032,loss,ns,0.0000404,0.0000131,3.071775115,0.002316561,pos,ns,0.013562148,0.003850651,3.522040686,0.0004926,pos,ns,3.307505356,-0.000383355,0.000132424,-2.894912727,0.004061877,neg,ns,0.882807077,Tsga10,Tsga10_Exon,1,37819548,37819597,37819596,37819597,50,-,ATTTTCTCCTGAGTAAGCTGTAGCTCATATTTTTTCTTAGCAAGGTGTCG,"Exon (Tsga10-201/Tsga10, exon 10 of 20)",1,37754776,37865079,110304,2,Tsga10-201,45482,Tsga10-201;Tsga10-203;Tsga10-209;Tsga10-202;Tsga10-206,Tsga10;Tsga10;Tsga10;Tsga10;Tsga10,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,211484,ENSMUSG00000060771,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7413,cg16188689,0.0000161,0.0000187,0.860106077,0.390395248,gain,ns,0.0000977,0.0000318,3.07093263,0.002322912,pos,ns,-0.010074312,0.009323914,-1.08048098,0.280767917,neg,ns,0.55165252,0.000692782,0.000320649,2.160565122,0.031494814,pos,ns,0.475133476,Nr2e1,Nr2e1_Exon,10,42574351,42574400,42574399,42574400,50,-,ATTACCGTCTTTGTTCATGTTGACTTCCAAACACTTCTTCAGCCGACACG,"Exon (Nr2e1-201/Nr2e1, exon 3 of 9)",10,42561963,42583632,21670,2,Nr2e1-201,9232,Nr2e1-201;Nr2e1-203;Nr2e1-204,Nr2e1;Nr2e1;Nr2e1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,11,21907,ENSMUSG00000019803,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
15657,cg22632258,0.00000541,0.00000971,0.557289394,0.577731874,gain,ns,0.0000506,0.0000165,3.069408072,0.002334444,pos,ns,0.014023295,0.00483301,2.901565447,0.003978878,pos,ns,2.400239375,-0.000436917,0.000166207,-2.628752158,0.008996865,neg,ns,0.677500906,Mbp,Mbp_Exon,18,82554632,82554681,82554680,82554681,50,-,GTACCATGGACCATGCCAGGCATGGCTTCCTCCCAAGGCACAGAGACACG,"Exon (Mbp-205/Mbp, exon 4 of 4)",18,82475146,82558703,83558,1,Mbp-205,79486,Mbp-205;Mbp-201;Mbp-213;Mbp-215;Mbp-212;Mbp-204;Mbp-211;Mbp-209;Mbp-216;Mbp-202;Mbp-203;Mbp-206;Mbp-207;Mbp-210,Mbp;Mbp;Mbp;Mbp;Mbp;Mbp;Mbp;Mbp;Mbp;Mbp;Mbp;Mbp;Mbp;Mbp,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,17196,ENSMUSG00000041607,conserved gene and region,18,82554680,82554790,111,*,111,9,0.621621622,0.870209059,0.081081081,0.00000221,CpGisland,TRUE,U11,Tr-P
763,cg02635521,0.000000877,0.00000347,0.252655436,0.800701934,gain,ns,-0.0000181,0.0000059,-3.069375481,0.002334691,neg,ns,-0.006775317,0.001728354,-3.920097144,0.000108983,neg,ns,3.962640443,0.000178576,0.0000594,3.00440595,0.002878016,pos,ns,0.891937934,Arglu1,Arglu1_Exon,8,8681889,8681938,8681937,8681938,50,-,ACTGTCTTGTCCAGTGTCCTGCAGAGTGTGCTCCTCGGCTGCCATACGCG,"Exon (Arglu1-204/Arglu1, exon 2 of 3)",8,8665075,8690521,25447,2,Arglu1-201,8583,Arglu1-201;Arglu1-204;Arglu1-203;Arglu1-202,Arglu1;Arglu1;Arglu1;Arglu1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,7,234023,ENSMUSG00000040459,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3200,cg02779868,-0.000000796,0.00000142,-0.559224549,0.576412259,loss,ns,0.00000741,0.00000242,3.067183056,0.002351369,pos,ns,0.002580922,0.000708147,3.644611236,0.000313897,pos,ns,3.503213256,-0.0000725,0.0000244,-2.975271345,0.003157459,neg,ns,0.955019411,Gm46443,Gm46443_Intergenic_upstream,14,23244692,23244741,23244740,23244741,50,+,ACTTTTACTACCCTTCATTTGCTTTGACGGGTTGATGTTGCCATGGTGCG,Distal Intergenic,14,23321144,23321507,364,1,Gm46443-201,-76403,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,12,12,108168141,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23365,cg15006148,-0.0000175,0.0000107,-1.637151934,0.102613411,loss,ns,0.0000556,0.0000181,3.066529265,0.002356364,pos,ns,0.005222668,0.00531366,0.982875749,0.326435056,pos,ns,0.486203209,-0.000299621,0.000182736,-1.639635707,0.102095276,neg,ns,0.373431283,Sox21,Sox21_Intergenic_downstream,14,118194413,118194462,118194413,118194414,50,-,CGTTTTTCTGGCTTAAAGGTGCATCAGAGATATGCATTTTAGCATATTCA,Distal Intergenic,14,118233232,118237030,3799,2,Sox21-201,42617,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,26,27,223227,ENSMUSG00000061517,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10035,cg01182628,-0.00000888,0.00000486,-1.827349431,0.068608493,loss,ns,-0.0000253,0.00000826,-3.066514372,0.002356478,neg,ns,-0.008009823,0.002418886,-3.311368814,0.001038085,neg,ns,2.983767262,0.0000417,0.0000832,0.500933674,0.616773291,pos,ns,0.884354202,Maml3,Maml3_Intron,3,52062212,52062261,52062260,52062261,50,+,TGTATAAGATCTGACAGCCCGGCAGTTATAGGCCACCTGCATCACTGTCG,"Intron (Maml3-202/Maml3, intron 1 of 4)",3,51685907,52105076,419170,2,Maml3-202,42815,Maml3-202,Maml3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,32,433586,ENSMUSG00000061143,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25071,cg10217408,-0.000017,0.00000502,-3.389945129,0.000789515,loss,ns,-0.0000261,0.00000853,-3.066416319,0.002357228,neg,ns,0.004819782,0.002498174,1.92932163,0.054603444,pos,ns,1.262779965,-0.000417015,0.0000859,-4.853978764,0.00000192,neg,ns,0.922748768,Rbbp5,Rbbp5_Exon,1,132497989,132498038,132497989,132497990,50,-,CGGCCTAAAGGATCAAAAGGTAAAGAGAAAGATTCTCCATTTAAACCGAA,"Exon (Rbbp5-206/Rbbp5, exon 13 of 14)",1,132477365,132504490,27126,1,Rbbp5-206,20624,Rbbp5-206;Rbbp5-207;Rbbp5-202;Rbbp5-201,Rbbp5;Rbbp5;Rbbp5;Rbbp5,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,213464,ENSMUSG00000026439,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11785,cg14700070,0.000190789,0.0000162,11.7480058,1.32E-26,gain,yes,-0.0000846,0.0000276,-3.066357543,0.002357677,neg,ns,0.061503824,0.008082889,7.609138831,3.34E-13,pos,yes,12.47659192,-0.002820646,0.00027797,-10.14730942,4.44E-21,neg,yes,0.635634884,Mbnl1,Mbnl1_Exon,3,60614642,60614691,60614690,60614691,50,-,CTGGCCCATTGCCATCATGTGCTCGCTGCCTGCTAATTAAGACTCAGTCG,"Exon (Mbnl1-216/Mbnl1, exon 5 of 7)",3,60473074,60621458,148385,1,Mbnl1-216,141568,Mbnl1-216;Mbnl1-211;Mbnl1-201;Mbnl1-202;Mbnl1-203;Mbnl1-218;Mbnl1-219;Mbnl1-214;Mbnl1-207;Mbnl1-205;Mbnl1-212;Mbnl1-210;Mbnl1-215;Mbnl1-223;Mbnl1-206,Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1,0;0;0;0;0;0;0;0;0;0;0;19001;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,19,36,56758,ENSMUSG00000027763,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6597,cg08488161,0.0000425,0.0000103,4.138694777,0.0000451,gain,ns,0.0000535,0.0000175,3.065370966,0.002365237,pos,ns,0.012133783,0.005116569,2.371468638,0.01832834,pos,ns,1.736876871,-0.0000522,0.000175958,-0.296727721,0.7668731,neg,ns,0.720904687,Gm37013,Gm37013_Exon,18,37817882,37817931,37817882,37817883,50,-,CGGAGTGATAGCTTCATGATGGTGAAGTCACCCAGTGCACCTATGGCAGG,"Exon (Pcdhgc4-201/Pcdhgc4, exon 1 of 4)",18,36969916,37833296,863381,1,Gm37013-201,847966,Gm37013-201;Gm37388-201;Gm42416-201;Pcdhga1-201;Pcdhga10-201;Pcdhga11-201;Pcdhga12-201;Pcdhga2-201;Pcdhga3-201;Pcdhga4-201;Pcdhga5-201;Pcdhga6-201;Pcdhga7-201;Pcdhga8-201;Pcdhga9-201;Pcdhgb1-201;Pcdhgb2-202;Pcdhgb4-202;Pcdhgb5-201;Pcdhgb6-201;Pcdhgb7-201;Pcdhgb8-201;Pcdhgc3-201;Pcdhgc3-202;Pcdhgc4-201;Pcdhgc4-203;Pcdhgc4-202;Pcdhgc5-201;Pcdhgc5-203;Pcdhgc5-204;Pcdhgc5-202,Gm37013;Gm37388;Gm42416;Pcdhga1;Pcdhga10;Pcdhga11;Pcdhga12;Pcdhga2;Pcdhga3;Pcdhga4;Pcdhga5;Pcdhga6;Pcdhga7;Pcdhga8;Pcdhga9;Pcdhgb1;Pcdhgb2;Pcdhgb4;Pcdhgb5;Pcdhgb6;Pcdhgb7;Pcdhgb8;Pcdhgc3;Pcdhgc3;Pcdhgc4;Pcdhgc4;Pcdhgc4;Pcdhgc5;Pcdhgc5;Pcdhgc5;Pcdhgc5,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;-1582;-1621;-1635;-1723,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,14,100384868,ENSMUSG00000103458,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
26461,cg08798726,-0.00000368,0.00000501,-0.734212639,0.463374116,loss,ns,-0.0000261,0.00000851,-3.065030423,0.002367851,neg,ns,0.003560795,0.002492122,1.428820568,0.154062632,pos,ns,0.812302688,-0.000162055,0.0000857,-1.890876429,0.059573143,neg,ns,0.930072355,Mtor,Mtor_Intron,4,148500539,148500588,148500587,148500588,50,-,CCCTCCCAGCTCATCTGGGAGGGTCAGGTGCCTGTTGGGTGAAGTCAGCG,"Intron (Mtor-202/Mtor, intron 28 of 57)",4,148448611,148557683,109073,1,Mtor-202,51928,Angptl7-201;Mtor-202,Angptl7;Mtor,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,5,56717,ENSMUSG00000028991,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20381,cg14462513,0.000122701,0.00000778,15.76813932,1.54E-41,gain,yes,-0.0000405,0.0000132,-3.064748446,0.002370018,neg,ns,-0.000494846,0.003872966,-0.127769154,0.898414504,neg,ns,0.046523246,0.00024806,0.000133191,1.862439995,0.063486963,pos,ns,0.208310307,Hoxc5,Hoxc5_Intron,15,103014571,103014620,103014571,103014572,50,+,CGCCTGGGTTTTATAGGCCATGCGGGGCAAATAAAGAAAAAAAACCTGCG,"Intron (Hoxc5-202/Hoxc5, intron 1 of 1)",15,102967443,103015676,48234,1,Hoxc5-202,47128,Hoxc4-202;Hoxc5-202;Hoxc5-201;Hoxc6-202;Hoxc6-203;Hoxc6-201,Hoxc4;Hoxc5;Hoxc5;Hoxc6;Hoxc6;Hoxc6,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,46,134,15424,ENSMUSG00000022485,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
10571,cg16768306,-0.000000467,0.0000014,-0.333894074,0.738685243,loss,ns,0.00000728,0.00000238,3.064669731,0.002370623,pos,ns,0.001416892,0.000696366,2.034694927,0.042732266,pos,ns,1.369244074,0.0000034,0.0000239,0.141782813,0.887343656,pos,ns,0.959820337,Fnip1,Fnip1_Exon,11,54480256,54480305,54480256,54480257,50,+,CGGTGCTCTTCTGATGCCAATATGCTTGGAGAGATGATGTTTGGCTCAGT,"Exon (Fnip1-201/Fnip1, exon 4 of 18)",11,54438199,54518235,80037,1,Fnip1-201,42057,Fnip1-201;Fnip1-202,Fnip1;Fnip1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,7,216742,ENSMUSG00000035992,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17546,cg16713487,-0.0000137,0.00000641,-2.140139812,0.033123709,loss,ns,0.0000334,0.0000109,3.064383283,0.002372827,pos,ns,0.008382148,0.003189334,2.628181612,0.009011634,pos,ns,2.045196465,-0.000239896,0.000109681,-2.187214515,0.029473712,neg,ns,0.874909249,Gm20561,Gm20561_Intergenic_downstream,9,90884155,90884204,90884203,90884204,50,+,ATTTATCCAAGATGAATACCTAGAGATATTCTTTGGTATCAGTGTCAGCG,Distal Intergenic,9,90907906,90908197,292,2,Gm20561-201,23993,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,3,108167674,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19179,cg10858898,-0.0000037,0.00000428,-0.865186146,0.387605659,loss,ns,-0.0000223,0.00000727,-3.06388976,0.002376628,neg,ns,0.007510728,0.002129135,3.527595821,0.000482771,pos,ns,3.316258539,-0.000163959,0.0000732,-2.239238332,0.02584942,neg,ns,0.636551337,Thra,Thra_Exon,11,98764378,98764427,98764426,98764427,50,-,GCACTTCTGGCCCAAGCTGCTGATGAAGGTGACTGACCTCCGCATGATCG,"Exon (Thra-201/Thra, exon 9 of 10)",11,98741811,98769006,27196,1,Thra-201,22567,Nr1d1-201;Nr1d1-202;Thra-201;Thra-202;Thra-203,Nr1d1;Nr1d1;Thra;Thra;Thra,0;5999;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,13,18,21833,ENSMUSG00000058756,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9394,cg13324140,-0.0000293,0.00000936,-3.131627161,0.001904228,loss,ns,0.0000487,0.0000159,3.06315586,0.002382291,pos,ns,0.010716493,0.00465734,2.300990105,0.022055497,pos,ns,1.656483143,-0.000312704,0.000160166,-1.95237785,0.051793227,neg,ns,0.540329272,Slc25a14,Slc25a14_fiveUTR,X,48624136,48624185,48624184,48624185,50,+,GTATCTTTCCCGGAATAATCCTAATTTTTCTAAGGGTGAAGTTTGCAACG,Promoter (<=1kb),20,48623413,48631036,7624,1,Slc25a14-203,723,Slc25a14-203;Slc25a14-201;Slc25a14-204;Slc25a14-205;Slc25a14-207;Slc25a14-202;Slc25a14-206;Slc25a14-208,Slc25a14;Slc25a14;Slc25a14;Slc25a14;Slc25a14;Slc25a14;Slc25a14;Slc25a14,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,3,20523,ENSMUSG00000031105,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1387,cg01194026,-0.0000497,0.00000678,-7.331935359,1.99E-12,loss,yes,-0.0000353,0.0000115,-3.062960828,0.002383798,neg,ns,-0.000984504,0.003373662,-0.291820564,0.770619007,neg,ns,0.113160284,-0.000109562,0.00011602,-0.944334465,0.345734171,neg,ns,0.875643991,Sema3d,Sema3d_Exon,5,12585096,12585145,12585096,12585097,50,-,CGGTTGAGATACAAAGACTACATCCAAATCCTTAGCAGCCCAAACTTCAG,"Exon (Sema3d-201/Sema3d, exon 18 of 18)",5,12383385,12588948,205564,1,Sema3d-201,201711,Sema3d-201;Sema3d-202,Sema3d;Sema3d,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,108151,ENSMUSG00000040254,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22198,cg24143917,0.00000262,0.00000883,0.296260819,0.767229278,gain,ns,0.000046,0.000015,3.062684487,0.002385934,pos,ns,0.004742102,0.004396012,1.078727989,0.281547629,pos,ns,0.550448126,-0.000261748,0.000151179,-1.731384732,0.084378062,neg,ns,0.498119929,Gm26897,Gm26897_Intron,5,111741211,111741260,111741211,111741212,50,+,CGGGATTTTAAGTGGCTAATGGCAGCTGGGGCGTCAAAAGCAGTTTTTAC,"Intron (E130006D01Rik-203/E130006D01Rik-203, intron 2 of 4)",5,111733924,111734574,651,1,Gm26897-201,7287,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,23,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
26069,cg22367907,-0.0000051,0.00000286,-1.784383779,0.07533922,loss,ns,-0.0000149,0.00000485,-3.062531954,0.002387114,neg,ns,-0.00305137,0.00142147,-2.14662979,0.03259846,neg,ns,1.486802922,0.0000608,0.0000489,1.243266263,0.214709172,pos,ns,0.922551402,B3galt2,B3galt2_Exon,1,143647130,143647179,143647130,143647131,50,+,CGCCGTTTGCACTTGGAAGATGTATATGTAGGGATCTGTCTTGCCAAGTT,"Exon (B3galt2-201/B3galt2, exon 2 of 2)",1,143640664,143654614,13951,1,B3galt2-201,6466,B3galt2-201;Cdc73-201;Cdc73-205,B3galt2;Cdc73;Cdc73,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,3,26878,ENSMUSG00000033849,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16611,cg07679131,0.0000697,0.00000658,10.59470902,1.37E-22,gain,yes,-0.0000342,0.0000112,-3.062428212,0.002387917,neg,ns,-0.008008419,0.003273331,-2.446565328,0.014977708,neg,ns,1.824554626,0.000223617,0.00011257,1.98647829,0.047860467,pos,ns,0.6847509,Bcas3,Bcas3_Intron,11,85628555,85628604,85628603,85628604,50,-,TTTGGCTCGCCTCACCGGCAGTAATTTAATTTTTCCTTCATTCTGACTCG,"Intron (Bcas3-205/Bcas3, intron 24 of 27)",11,85353167,85826058,472892,1,Bcas3-205,275388,Bcas3-205;Bcas3-206;Bcas3-201;Bcas3-202;Bcas3-216;Bcas3-212;Bcas3-203,Bcas3;Bcas3;Bcas3;Bcas3;Bcas3;Bcas3;Bcas3,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,24,192197,ENSMUSG00000059439,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9771,cg07199887,-0.00000452,0.00000355,-1.274702194,0.203369281,loss,ns,0.0000185,0.00000603,3.062409354,0.002388063,pos,ns,0.004308411,0.001766506,2.438944551,0.015291065,pos,ns,1.815562279,-0.0000926,0.0000608,-1.523645135,0.128616838,neg,ns,0.919366258,Ascc3,Ascc3_Intron,10,50793114,50793163,50793162,50793163,50,-,GTTATGCTTGTAAAACAAGCTCAGGTGGAGTCTCTAATCCTCAGGGCACG,"Intron (Ascc3-201/Ascc3, intron 36 of 41)",10,50592669,50851485,258817,1,Ascc3-201,200445,Ascc3-201;Ascc3-202,Ascc3;Ascc3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,6,77987,ENSMUSG00000038774,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24474,cg07256747,0.00001,0.00000463,2.168229952,0.030901619,gain,ns,-0.0000241,0.00000787,-3.062354865,0.002388485,neg,ns,-0.004050696,0.002304985,-1.757363503,0.079842935,neg,ns,1.097763504,-0.000047,0.0000793,-0.592762451,0.553772292,neg,ns,0.794524734,Atxn2l,Atxn2l_threeUTR,7,126492423,126492472,126492471,126492472,50,-,GGCCCTGTCTGCTGCACTGACCTTACCTCGGCTAAGTCAGGAGACAGTCG,3' UTR,7,126491708,126503437,11730,2,Atxn2l-201,10965,Atxn2l-201;Atxn2l-203;Atxn2l-206;Atxn2l-205;Atxn2l-202;Tufm-201;Tufm-202;Tufm-203;Tufm-204;Tufm-205;Tufm-206,Atxn2l;Atxn2l;Atxn2l;Atxn2l;Atxn2l;Tufm;Tufm;Tufm;Tufm;Tufm;Tufm,0;0;0;0;0;5062;5045;4794;3809;3737;3052,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,8,13,233871,ENSMUSG00000032637,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27191,cg07536573,0.000162568,0.0000173,9.422457546,1.06E-18,gain,yes,-0.0000897,0.0000293,-3.061331386,0.002396422,neg,ns,0.018127209,0.008587126,2.110975057,0.035574859,pos,ns,1.448856817,-0.000856298,0.000295311,-2.899651906,0.004002591,neg,ns,0.085297092,Mafb,Mafb_Exon,2,160365946,160365995,160365946,160365947,50,+,CGCCGCTTCTGCTTCAGGCGGATCACCTCGTCCTTGGTGAAGCCCCGCAG,"Exon (Mafb-201/Mafb, exon 1 of 1)",2,160363703,160367065,3363,2,Mafb-201,1070,Mafb-201,Mafb,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,14,22,16658,ENSMUSG00000074622,conserved gene and region,2,160365864,160367635,1772,*,1772,185,0.687358917,0.886994873,0.104401806,2.50E-143,CpGisland,TRUE,U3,Pr-B
1114,cg20431797,0.0000564,0.000013,4.32706213,0.0000204,gain,ns,0.0000678,0.0000221,3.060940956,0.002399456,pos,ns,0.017783562,0.006487319,2.741280665,0.00647527,pos,ns,2.188742121,-0.00023319,0.000223098,-1.04523445,0.296728961,neg,ns,0.710236726,Gm14515,Gm14515_Intergenic_downstream,X,11632121,11632170,11632169,11632170,50,-,TTCTGGAGAGATGTGAATTGGCATTGATTTAATCCTCTTCCCAGCACGCG,Distal Intergenic,20,11601354,11601569,216,1,Gm14515-201,30816,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,28,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
2896,cg06610975,0.0000666,0.0000046,14.46339489,1.37E-36,gain,yes,-0.0000239,0.00000782,-3.060537926,0.002402592,neg,ns,-0.007494509,0.002290168,-3.272471505,0.001186449,neg,ns,2.925750852,0.000263865,0.0000788,3.350293335,0.00090704,pos,ns,0.733651392,Ehbp1,Ehbp1_Intron,11,22034739,22034788,22034739,22034740,50,+,CGGGAAGCCGAGTAAAGATCAGAGCAAGCTCATTAGCATTCTGACAAAAT,"Intron (Ehbp1-201/Ehbp1, intron 20 of 23)",11,22005828,22285838,280011,2,Ehbp1-201,251050,Ehbp1-201;Ehbp1-202;Ehbp1-207,Ehbp1;Ehbp1;Ehbp1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,34,45,216565,ENSMUSG00000042302,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18238,cg08490238,0.000186848,0.0000105,17.81776,2.17E-49,gain,yes,-0.0000545,0.0000178,-3.060112946,0.002405902,neg,ns,-0.004709496,0.00521931,-0.902321516,0.367586648,neg,ns,0.434640272,0.000171009,0.000179492,0.952742612,0.341462766,pos,ns,0.649535471,Ap3b1,Ap3b1_Intergenic_downstream,13,94575963,94576012,94576011,94576012,50,-,CCGCGGAAGCACCTGTCTGCATTGACGGCACAGAGCACTTCTTATTAGCG,Distal Intergenic,13,94542303,94547867,5565,1,Ap3b1-202,33709,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,33,55,11774,ENSMUSG00000021686,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2275,cg19792695,0.000313872,0.0000152,20.59110969,5.66E-60,gain,yes,-0.0000792,0.0000259,-3.059740277,0.002408809,neg,ns,0.016045818,0.007586638,2.115010315,0.035226708,pos,ns,1.453127936,0.000491832,0.000260904,1.885109228,0.060350222,pos,ns,0.483315294,Meis1,Meis1_threeUTR,11,18885550,18885599,18885598,18885599,50,-,TTTCGCTTGCGTGACTTGAATACAGTCACTATGGGGGACTTGCCTGCTCG,3' UTR,11,18879817,19018985,139169,2,Meis1-206,133386,Meis1-206;Meis1-202;Meis1-209;Meis1-201;Meis1-203;Meis1-208;Meis1-207,Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,12,88,17268,ENSMUSG00000020160,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9080,cg02710949,0.0000163,0.0000127,1.281197273,0.201081948,gain,ns,0.0000662,0.0000216,3.059435523,0.002411188,pos,ns,0.002637035,0.00633655,0.416162673,0.677578936,pos,ns,0.169040103,0.000114967,0.000217913,0.52758094,0.598167615,pos,ns,0.33410706,Gm13469,Gm13469_Intergenic_upstream,2,46802952,46803001,46803000,46803001,50,+,CGGATGTTAACTTCCCACTGAGAGAATTTCTCCAGGTCGAATAGAAAACG,Distal Intergenic,2,46406220,46406569,350,2,Gm13469-201,-396383,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,20,27,383690,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25884,cg20951495,-0.0000305,0.00000936,-3.256929287,0.001251057,loss,ns,0.0000486,0.0000159,3.059424481,0.002411274,pos,ns,0.001210373,0.004658619,0.259813754,0.795179908,pos,ns,0.099534602,0.0000809,0.00016021,0.504957954,0.613947144,pos,ns,0.779048546,Frmpd3,Frmpd3_Exon,X,140362236,140362285,140362284,140362285,50,+,ATATATGGCTTTGGCTTCGTGGCTGGCAGTGAGAGGCCTGTGGTGGTTCG,"Exon (Frmpd3-203/Frmpd3, exon 2 of 15)",20,140342263,140435467,93205,1,Frmpd3-203,19973,Frmpd3-203,Frmpd3,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,10,245643,ENSMUSG00000042425,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2505,cg14911328,-0.0000117,0.00000442,-2.640860637,0.008688521,loss,ns,0.000023,0.00000751,3.059372417,0.002411681,pos,ns,-0.001588636,0.002201605,-0.721580722,0.471096177,neg,ns,0.32689042,-0.0000618,0.0000757,-0.816700601,0.414726709,neg,ns,0.908506113,Pkhd1,Pkhd1_Intron,1,20106662,20106711,20106662,20106663,50,-,CGAATCTCCGTGGCCTTTTAGAGAAATCATCATTAAATGCAGGGTCCTGT,"Intron (Pkhd1-201/Pkhd1, intron 61 of 66)",1,20057779,20618064,560286,2,Pkhd1-201,511353,Pkhd1-201,Pkhd1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,25,241035,ENSMUSG00000043760,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21649,cg22914193,0.000217963,0.0000197,11.0861667,2.80E-24,gain,yes,-0.000102148,0.0000334,-3.058219092,0.002420706,neg,ns,0.086117116,0.009785408,8.800564772,9.72E-17,pos,yes,16.01225329,-0.001080422,0.000336519,-3.210580061,0.001463621,neg,ns,0.59830912,Zfhx3,Zfhx3_Intron,8,108775382,108775431,108775430,108775431,50,+,ATTTCTGATCAATGAAAATGAAATTGCATCACCTCCTCAGAGGCTCCACG,"Intron (Zfhx3-204/Zfhx3, intron 7 of 15)",8,107942644,108961630,1018987,1,Zfhx3-204,832738,Zfhx3-204;Zfhx3-202;Zfhx3-201,Zfhx3;Zfhx3;Zfhx3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,114,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5274,cg18088758,-0.0000164,0.00000357,-4.594960915,0.00000631,loss,ns,0.0000186,0.00000607,3.057999096,0.002422431,pos,ns,0.003712411,0.0017781,2.087852429,0.037627198,pos,ns,1.424498126,-0.000088,0.0000611,-1.438670264,0.151252806,neg,ns,0.925642221,Exoc4,Exoc4_Intron,6,33283800,33283849,33283848,33283849,50,+,CCTCTGCATTTAAATTGAAATTTTAATTCCCTTATTGTCTTGAAAAGACG,"Intron (Exoc4-201/Exoc4, intron 3 of 17)",6,33249085,33973979,724895,1,Exoc4-201,34715,Exoc4-201;Exoc4-206;Exoc4-202;Exoc4-204;Exoc4-203;Exoc4-207,Exoc4;Exoc4;Exoc4;Exoc4;Exoc4;Exoc4,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,7,20336,ENSMUSG00000029763,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4671,cg13062760,-0.0000072,0.00000468,-1.538444602,0.124959999,loss,ns,0.0000243,0.00000795,3.057303807,0.002427891,pos,ns,0.007495833,0.002329228,3.218162321,0.001426702,pos,ns,2.845666772,-0.000225404,0.0000801,-2.813958602,0.0052063,neg,ns,0.90887808,Uhrf2,Uhrf2_Exon,19,30086289,30086338,30086337,30086338,50,+,GGAGCAGAGTCTCGGAATTGGAGAGCTGGTAAGCCAGTCAGAGTGATACG,"Exon (Uhrf2-201/Uhrf2, exon 11 of 16)",19,30030513,30093722,63210,1,Uhrf2-201,55776,Uhrf2-207;Uhrf2-201;Uhrf2-204;Uhrf2-203,Uhrf2;Uhrf2;Uhrf2;Uhrf2,55776;0;0;-2718,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,109113,ENSMUSG00000024817,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26187,cg11661600,0.0000492,0.0000106,4.625555274,0.0000055,gain,ns,-0.0000553,0.0000181,-3.057009332,0.002430206,neg,ns,0.023481389,0.005296141,4.433678692,0.0000129,pos,ns,4.890229048,-0.00049098,0.000182134,-2.69571031,0.007407348,neg,ns,0.477485582,Sox5,Sox5_Intron,6,144313142,144313191,144313190,144313191,50,-,TGCTCAACACCCAATAGCCATTCAAACGTTCTTCACAACTCTATCAAACG,"Intron (Sox5-209/Sox5, intron 4 of 13)",6,143843739,144781977,938239,2,Sox5-209,468786,Sox5-209;Sox5-212,Sox5;Sox5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,71,20678,ENSMUSG00000041540,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
19722,cg06916066,0.0000526,0.00000834,6.30408089,9.96E-10,gain,yes,-0.0000433,0.0000142,-3.055398617,0.002442909,neg,ns,-0.016038383,0.004152195,-3.862627557,0.000136591,neg,ns,3.864576532,0.0000912,0.000142794,0.638756182,0.523453199,pos,ns,0.897360493,Cachd1,Cachd1_Intron,4,100911022,100911071,100911070,100911071,50,-,TGGGAATTAAATGTCTGAAGTTCAAAGCAGTTTGCACATCAGAGCAAACG,"Intron (Cachd1-201/Cachd1, intron 3 of 26)",4,100776675,101004544,227870,1,Cachd1-201,134347,Cachd1-201;Cachd1-202,Cachd1;Cachd1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,5,320508,ENSMUSG00000028532,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7623,cg08916715,0.000140347,0.000013,10.80263693,2.67E-23,gain,yes,-0.0000674,0.0000221,-3.054983289,0.002446194,neg,ns,-0.009366307,0.006466195,-1.44850361,0.148486948,neg,ns,0.828311718,0.00048267,0.000222372,2.170551596,0.030723856,pos,ns,0.682668754,Zbtb20,Zbtb20_Intron,16,43503099,43503148,43503147,43503148,50,+,AGCCGAACAGCTAATTAAAGTAGGGATGATTAACCTGACTGGCAGTGCCG,"Intron (Zbtb20-211/Zbtb20, intron 4 of 4)",16,42907542,43569781,662240,1,Zbtb20-211,595557,Zbtb20-211;Zbtb20-217;Zbtb20-204;Zbtb20-215;Zbtb20-201;Zbtb20-203;Zbtb20-214;Zbtb20-213;Zbtb20-219;Zbtb20-216;Zbtb20-208;Zbtb20-207;Zbtb20-220;Zbtb20-206,Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,98,56490,ENSMUSG00000022708,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6197,cg14640670,0.0000249,0.00000873,2.850465982,0.004658138,gain,ns,-0.0000453,0.0000148,-3.054915362,0.002446732,neg,ns,-0.007452855,0.004344234,-1.715573858,0.087239236,neg,ns,1.059288145,0.0000214,0.000149398,0.143272243,0.886168259,pos,ns,0.545434438,Pura,Pura_threeUTR,18,36288278,36288327,36288326,36288327,50,-,ACAGAACCTCCACCAACTGACAGTTTCTCTTCTTGACTTGCCACCCATCG,3' UTR,18,36281097,36292535,11439,1,Pura-201,7181,Pura-201,Pura,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,19,19290,ENSMUSG00000043991,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19910,cg08902250,0.00000814,0.0000085,0.956733598,0.339447243,gain,ns,-0.0000441,0.0000144,-3.054819269,0.002447492,neg,ns,0.018835711,0.004232334,4.450431004,0.000012,pos,ns,4.922018567,-0.000754697,0.00014555,-5.185154395,0.00000039,neg,yes,0.830305751,Ogt,Ogt_Exon,X,101652936,101652985,101652936,101652937,50,-,CGAAAGAAAACTTGCCAAAGTGGAAAGGTGGCTTTTAGCATTCTGTGTTT,"Exon (Ogt-204/Ogt, exon 4 of 4)",20,101640060,101682940,42881,1,Ogt-202,12876,Ogt-202;Ogt-206;Ogt-201;Ogt-205;Ogt-204;Ogt-207;Ogt-203,Ogt;Ogt;Ogt;Ogt;Ogt;Ogt;Ogt,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,Exon,32,33,108155,ENSMUSG00000034160,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14748,cg22858632,-0.00000258,0.00000174,-1.479656694,0.139980373,loss,ns,-0.00000904,0.00000296,-3.054664801,0.002448716,neg,ns,-0.00010857,0.000866611,-0.125280891,0.900382384,neg,ns,0.045573011,0.0000189,0.0000298,0.633382869,0.526950647,pos,ns,0.957995221,Abhd15,Abhd15_threeUTR,11,77537682,77537731,77537730,77537731,50,-,CCGGCAGCCAAGTACTATGACATCCCAATTAGTAAACACAAAACAGAACG,3' UTR,11,77515984,77538607,22624,1,Abhd15-202,21698,Abhd15-202;Abhd15-203;Gm12734-201;Taok1-201;Taok1-202,Abhd15;Abhd15;Gm12734;Taok1;Taok1,0;0;-4402;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,6,67477,ENSMUSG00000000686,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16620,cg11976852,0.0000622,0.00000632,9.833107388,4.88E-20,gain,yes,-0.0000328,0.0000107,-3.054633099,0.002448967,neg,ns,0.00135881,0.003147731,0.431679348,0.666274549,pos,ns,0.176346776,-0.0000769,0.00010825,-0.709988336,0.478245088,neg,ns,0.588486742,Btbd11,Btbd11_Exon,10,85632110,85632159,85632110,85632111,50,+,CGCCCAGCCAGAGAAGGAGAAGAGTGATATCCTGTCCCTGGAGGAGATTC,"Exon (Btbd11-203/Btbd11, exon 10 of 17)",10,85386814,85660292,273479,1,Btbd11-203,245296,Btbd11-203;Btbd11-201;Btbd11-202;Btbd11-206,Btbd11;Btbd11;Btbd11;Btbd11,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,13,13,74007,ENSMUSG00000020042,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6242,cg12732110,-0.0000639,0.0000222,-2.875971823,0.004306904,loss,ns,0.000115206,0.0000377,3.054147345,0.002452818,pos,ns,-0.008635587,0.011051049,-0.781426955,0.435147793,neg,ns,0.361363214,0.000864995,0.000380045,2.276034392,0.023525797,pos,ns,0.817730763,Tshz3,Tshz3_Intergenic_upstream,7,36513161,36513210,36513161,36513162,50,-,CGCTGCCTGCATCTCTCAGGCTAATGACACACACACTAGAGTCATTGATT,Distal Intergenic,7,36698118,36773553,75436,1,Tshz3-201,-184957,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,12,58,243931,ENSMUSG00000021217,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23992,cg13331751,0.0000316,0.000011,2.870152515,0.004384845,gain,ns,-0.0000572,0.0000187,-3.053635317,0.002456884,neg,ns,0.037473217,0.005488111,6.828071902,4.55E-11,pos,yes,10.34239971,-0.001676297,0.000188736,-8.881714829,5.44E-17,neg,yes,0.807382414,Atxn2,Atxn2_Exon,5,121779561,121779610,121779561,121779562,50,+,CGAATTCTGGTTCAGACCAAAGAGTAGTTAATGGAGGCAAGTATTTTGAC,"Exon (Atxn2-201/Atxn2, exon 9 of 25)",5,121711609,121814950,103342,1,Atxn2-201,67952,Atxn2-201;Atxn2-220;Atxn2-209;Atxn2-208;Atxn2-219;Atxn2-214,Atxn2;Atxn2;Atxn2;Atxn2;Atxn2;Atxn2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,16,20239,ENSMUSG00000042605,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25729,cg12434982,0.00012059,0.0000346,3.482387208,0.0005684,gain,ns,0.000179606,0.0000588,3.052996984,0.002461962,pos,ns,0.040569219,0.017235011,2.353884093,0.019202291,pos,ns,1.71664695,-0.000398742,0.000592711,-0.672742875,0.501612042,neg,ns,0.415596868,Lhx9,Lhx9_Exon,1,138838652,138838701,138838652,138838653,50,-,CGGAAATGCCAAGGTGGCAGCGGGCACATCTCTGCACAGAGAACCTTCTG,"Exon (Lhx9-201/Lhx9, exon 3 of 5)",1,138825186,138842457,17272,2,Lhx9-201,3756,Lhx9-201;Lhx9-203;Lhx9-205;Lhx9-202;Lhx9-204;Lhx9-206;Lhx9-207,Lhx9;Lhx9;Lhx9;Lhx9;Lhx9;Lhx9;Lhx9,0;0;0;0;0;-4993;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,12,16876,ENSMUSG00000019230,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
12511,cg20766935,-0.000034,0.0000148,-2.300175873,0.022102171,loss,ns,0.0000766,0.0000251,3.05299301,0.002461993,pos,ns,0.012203338,0.007355133,1.659159356,0.098094994,pos,ns,1.008353157,-0.000229284,0.000252942,-0.906466884,0.365392814,neg,ns,0.701113105,Gm13578,Gm13578_Intergenic_downstream,2,64814568,64814617,64814616,64814617,50,-,ACTAATTAAGGGAATGTATTAATTGCAACTATTCATCAACACCACCAACG,Distal Intergenic,2,64867999,64868588,590,2,Gm13578-201,54020,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,10,667291,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21361,cg20522807,0.0000107,0.00000988,1.080630216,0.280701607,gain,ns,0.0000513,0.0000168,3.052789698,0.002463612,pos,ns,-0.000224627,0.004919814,-0.045657613,0.963612546,neg,ns,0.016097554,0.000260942,0.000169192,1.542284333,0.124024665,pos,ns,0.836249915,Slc6a17,Slc6a17_Exon,3,107473647,107473696,107473647,107473648,50,-,CGCTGGACGAACAACAGCCCCACGAGGAATGCAAAGACACAGCAGCCCAC,"Exon (Slc6a17-208/Slc6a17, exon 10 of 12)",3,107467543,107518018,50476,2,Slc6a17-208,44322,Slc6a17-208;Slc6a17-201;Slc6a17-206;Slc6a17-210,Slc6a17;Slc6a17;Slc6a17;Slc6a17,0;0;0;-4942,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,229706,ENSMUSG00000027894,conserved gene and region,3,107473564,107473716,153,*,153,10,0.549019608,0.885416667,0.065359477,0.00000333,CpGisland,TRUE,NA,NRS
12626,cg03260195,0.00000127,0.00000902,0.140331859,0.88848893,gain,ns,0.0000468,0.0000153,3.052690788,0.002464401,pos,ns,0.009073046,0.004490263,2.020604732,0.044180217,pos,ns,1.354772152,-0.000210212,0.00015442,-1.361304995,0.174405968,neg,ns,0.640924058,Kcnq3,Kcnq3_Exon,15,66005930,66005979,66005930,66005931,50,+,CGAGGATTAGAAAGGCGAACCCGATCCAAGAGACCCAGCTTTTGGCTACA,"Exon (Kcnq3-201/Kcnq3, exon 10 of 15)",15,65986387,66286642,300256,2,Kcnq3-201,280663,Kcnq3-201,Kcnq3,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,110862,ENSMUSG00000056258,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15525,cg24237468,-0.00000593,0.00000235,-2.522393018,0.012156351,loss,ns,0.0000122,0.00000399,3.052614817,0.002465006,pos,ns,0.001316483,0.001169215,1.125954975,0.261055487,pos,ns,0.583267175,0.0000301,0.0000402,0.748582757,0.454676303,pos,ns,0.946993114,Gm7503,Gm7503_Intergenic_upstream,18,81584321,81584370,81584369,81584370,50,-,AATCTGTGACAATCAAAACGTTACTTACAAATGAAATCACCAATGACCCG,Distal Intergenic,18,80997003,80997383,381,2,Gm7503-201,-586987,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,17,21,665124,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1275,cg26530885,-0.0000295,0.00000951,-3.100397443,0.00211008,loss,ns,0.0000493,0.0000162,3.051860375,0.002471026,pos,ns,0.018352264,0.004735413,3.875536163,0.000129867,pos,ns,3.886501691,-0.00054234,0.00016285,-3.330297334,0.000972303,neg,ns,0.771397604,Ptprg,Ptprg_Intron,14,12156039,12156088,12156087,12156088,50,+,TTTGCTTTTGCACTTGTAAACATTAAAATTCATCTAAAGCTGAGATCTCG,"Intron (Ptprg-201/Ptprg, intron 12 of 29)",14,11553532,12242041,688510,1,Ptprg-201,602507,Ptprg-201;Ptprg-204;Ptprg-208,Ptprg;Ptprg;Ptprg,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,23,19270,ENSMUSG00000021745,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10101,cg10976898,0.000190488,0.0000184,10.33140772,1.07E-21,gain,yes,-0.0000956,0.0000313,-3.051755517,0.002471864,neg,ns,0.024386868,0.009176648,2.657491955,0.008280474,pos,ns,2.081944824,-0.001149306,0.000315584,-3.641836183,0.000317159,neg,ns,0.198392404,Gm28308,Gm28308_Intron,6,52175501,52175550,52175549,52175550,50,-,TCAGTCACTGCCGGGAAGGAAGCTCCGGCTTGTGAACTCTTCTTGAACCG,"Intron (Hoxaas3-203/Hoxaas3-203, intron 1 of 1)",6,52163359,52213339,49981,2,Gm28308-201,37789,Gm28308-201;Hoxa3-201;Hoxa3-202,Gm28308;Hoxa3;Hoxa3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,46,103,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
93,cg09576259,-0.0000103,0.00000409,-2.511536914,0.012528826,loss,ns,-0.0000212,0.00000695,-3.051006504,0.002477856,neg,ns,-0.001102995,0.0020348,-0.542065424,0.588162856,neg,ns,0.230502406,-0.00013441,0.00007,-1.920791645,0.055675011,neg,ns,0.78428073,Doc2g,Doc2g_threeUTR,19,4004577,4004626,4004577,4004578,50,-,CGGGTGCCCCTGAGGAAGCTGGTGCCAAACCGAGCCAGGAGCTTTGACAT,3' UTR,19,4003313,4007005,3693,1,Doc2g-201,1264,Doc2g-201;Doc2g-204;Doc2g-203;Doc2g-206;Doc2g-202;Doc2g-205;Gm49405-201;Ndufv1-214;Ndufv1-207;Ndufv1-201;Ndufv1-213;Ndufv1-209;Ndufv1-202;Ndufv1-204;Ndufv1-206;Ndufv1-211;Ndufv1-205;Ndufv1-203;Ndufv1-208;Ndufv1-212;Nudt8-201;Nudt8-202,Doc2g;Doc2g;Doc2g;Doc2g;Doc2g;Doc2g;Gm49405;Ndufv1;Ndufv1;Ndufv1;Ndufv1;Ndufv1;Ndufv1;Ndufv1;Ndufv1;Ndufv1;Ndufv1;Ndufv1;Ndufv1;Ndufv1;Nudt8;Nudt8,0;0;0;0;0;0;0;8068;8040;8180;8042;3392;8047;5221;4514;8078;8082;8039;8133;8071;3997;3946,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,2,60425,ENSMUSG00000024871,mapped to different genes,19,4004535,4004641,107,*,107,9,0.682242991,0.729545455,0.08411215,0.00000163,CpGisland,TRUE,U11,Tr-P
21627,cg26406731,-0.00000249,0.00000196,-1.267939094,0.205771171,loss,ns,0.0000102,0.00000334,3.049856224,0.002487084,pos,ns,0.002383386,0.000977642,2.437892452,0.015334778,pos,ns,1.814322509,-0.0000665,0.0000336,-1.978180934,0.048793404,neg,ns,0.957024059,Arih2,Arih2_Exon,9,108629331,108629380,108629331,108629332,50,-,CGGCCTGAAAAAATACAGGTGGTAGTTTCAATTTTTATTTAGAATTCTTA,"Exon (Arih2-206/Arih2, exon 2 of 8)",9,108602942,108649380,46439,2,Arih2-201,20000,Arih2-201;Arih2-204;Arih2-205;Arih2-206;Arih2-212;Arih2-210;Arih2-207,Arih2;Arih2;Arih2;Arih2;Arih2;Arih2;Arih2,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,23807,ENSMUSG00000064145,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23166,cg25639809,0.00000274,0.00000663,0.414101408,0.679086208,gain,ns,-0.0000343,0.0000113,-3.049824322,0.002487341,neg,ns,0.016773278,0.003298832,5.084611714,0.000000639,pos,ns,6.194734333,-0.000308467,0.000113447,-2.719048008,0.006915884,neg,ns,0.828696216,Cmip,Cmip_Exon,8,117377122,117377171,117377122,117377123,50,+,CGTTCAGCTGCTGTCCTGGGAGAATGCCCCGAAGTACTGTTTACAGCTCA,"Exon (Cmip-202/Cmip, exon 2 of 21)",8,117257064,117459430,202367,1,Cmip-202,120058,Cmip-202;Cmip-203;Cmip-201,Cmip;Cmip;Cmip,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,74440,ENSMUSG00000034390,conserved gene and region,8,117377076,117377189,114,*,114,10,0.587719298,1.017857143,0.087719298,0.000000223,CpGisland,TRUE,U10,Tr-S
27623,cg06433674,0.0000736,0.00000579,12.71407872,4.33E-30,gain,yes,-0.00003,0.00000984,-3.049609466,0.002489068,neg,ns,-0.003382883,0.002882317,-1.173667993,0.241428957,neg,ns,0.617210641,0.000225541,0.0000991,2.27536851,0.023566172,pos,ns,0.092361879,Tfap2c,Tfap2c_fiveUTR,2,172549831,172549880,172549831,172549832,50,+,CGCCATGTTGTGGAAAATAACCGATAATGTCAAGTACGAAGAGGACTGCG,Promoter (<=1kb),2,172549593,172558622,9030,1,Tfap2c-201,238,Tfap2c-201;Tfap2c-204;Tfap2c-203;Tfap2c-202;Tfap2c-206;Tfap2c-205,Tfap2c;Tfap2c;Tfap2c;Tfap2c;Tfap2c;Tfap2c,0;-773;-884;-902;-1111;-2236,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,2,21420,ENSMUSG00000028640,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
25734,cg23185292,0.0000244,0.0000156,1.57169815,0.117040628,gain,ns,0.0000805,0.0000264,3.04858046,0.002497356,pos,ns,0.021518468,0.007740109,2.780124892,0.005765938,pos,ns,2.239130059,-0.000679747,0.000266182,-2.553694054,0.011137006,neg,ns,0.803795466,Gm9038,Gm9038_Intergenic_upstream,6,138873149,138873198,138873149,138873150,50,+,CGATTAGTGTTCTTCAGCCATCAGAAAACTGACTGCAGGACTCTGCGGGT,Distal Intergenic,6,138859521,138860124,604,2,Gm9038-201,-13025,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,5,668196,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26425,cg00330845,0.0000578,0.0000126,4.588570838,0.00000649,gain,ns,-0.0000652,0.0000214,-3.048396488,0.002498841,neg,ns,0.014463954,0.006266185,2.308254993,0.021642857,pos,ns,1.664685408,-0.000252814,0.000215494,-1.173183957,0.241622676,neg,ns,0.137528883,Foxa2,Foxa2_Intergenic_downstream,2,147876733,147876782,147876733,147876734,50,-,CGAAAGGCTGACAGCTGTAAATGACATTGTCAGTACAAAAATTATCAGCC,Distal Intergenic,2,148044240,148045464,1225,2,Foxa2-203,168731,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,25,15376,ENSMUSG00000037025,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
8862,cg06745406,-0.00000727,0.00000521,-1.395401195,0.163893653,loss,ns,-0.000027,0.00000885,-3.048223235,0.00250024,neg,ns,-0.002691546,0.002592398,-1.038245818,0.299964761,neg,ns,0.522929761,-0.0000659,0.0000892,-0.739194926,0.460347978,neg,ns,0.929633051,Tstd2,Tstd2_Exon,4,46119947,46119996,46119995,46119996,50,+,GGGAAGTAACTGAATTTCCTGATGTCTGGGGCTAAGCAGCCTTGGAATCG,"Exon (Tstd2-202/Tstd2, exon 8 of 10)",4,46114746,46138475,23730,2,Tstd2-202,18479,Tmod1-201;Tstd2-202;Tstd2-201;Tstd2-208,Tmod1;Tstd2;Tstd2;Tstd2,81012;0;0;18417,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,272027,ENSMUSG00000035495,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17047,cg22811135,-0.0000106,0.0000122,-0.867227456,0.386488173,loss,ns,0.0000633,0.0000208,3.048064378,0.002501523,pos,ns,0.005488472,0.006085461,0.901899021,0.367810705,pos,ns,0.434375635,0.000326582,0.000209279,1.560512683,0.119659039,pos,ns,0.843847216,Il1rapl1,Il1rapl1_fiveUTR,X,88115039,88115088,88115039,88115040,50,-,CGGTAAGGTAATTGCTGGTCATCACAATGCGTATTCAGAAAAATCCACGT,Promoter (<=1kb),20,86740870,88115645,1374776,2,Il1rapl1-203,557,Il1rapl1-203;Il1rapl1-202,Il1rapl1;Il1rapl1,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,18,331461,ENSMUSG00000052372,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10389,cg14633509,-0.00000395,0.00000205,-1.930036502,0.05451443,loss,ns,0.0000106,0.00000348,3.047860324,0.002503172,pos,ns,0.004519169,0.001019484,4.432799279,0.0000129,pos,ns,4.888562902,-0.0000805,0.0000351,-2.296897668,0.02229096,neg,ns,0.072647127,Mxi1,Mxi1_Intron,19,53313867,53313916,53313867,53313868,50,+,CGGGGCTTGTTTTGCTCCAGAGCTCTGCTTTCCGAAACGCTTACATCATT,"Intron (Mxi1-201/Mxi1, intron 1 of 5)",19,53310518,53373293,62776,1,Mxi1-201,3349,Mxi1-201;Mxi1-208,Mxi1;Mxi1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,10,17859,ENSMUSG00000025025,conserved gene and region,19,53312964,53313905,942,*,942,96,0.671974522,0.92014652,0.101910828,1.22E-73,CpGisland,TRUE,U1,Pr-A
17688,cg24930802,0.0000666,0.00000613,10.85761993,1.73E-23,gain,yes,-0.0000317,0.0000104,-3.046509955,0.00251411,neg,ns,0.005159023,0.003053212,1.689703514,0.09209004,pos,ns,1.035787338,-0.000061,0.000105,-0.581372206,0.561412097,neg,ns,0.160547851,Zic4,Zic4_threeUTR,9,91386700,91386749,91386748,91386749,50,-,GCCAAGCCTGGAGCCCGTCCAGGCTTTTCATTAAGGACATAATATTTACG,3' UTR,9,91368970,91387793,18824,1,Zic4-204,17730,Zic4-204;Zic4-209;Zic4-205;Zic4-201;Zic4-202,Zic4;Zic4;Zic4;Zic4;Zic4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,18,55,22774,ENSMUSG00000036972,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
26796,cg07233233,-0.0000207,0.0000091,-2.272232329,0.023757145,loss,ns,0.0000471,0.0000155,3.045620173,0.002521342,pos,ns,0.008216521,0.004528525,1.814392131,0.070583902,pos,ns,1.151294334,-0.000247687,0.000155736,-1.590431017,0.112756925,neg,ns,0.515228288,Chd5,Chd5_Exon,4,152385788,152385837,152385788,152385789,50,+,CGGGAGGGATTGTCAACTACAACCAGATGCCCCTGGGGCCCTATGTGACC,"Exon (Chd5-202/Chd5, exon 40 of 42)",4,152338651,152390194,51544,1,Chd5-202,47137,Chd5-202;Chd5-205;Chd5-201;Chd5-203;Kcnab2-206;Kcnab2-208;Kcnab2-201;Kcnab2-218;Kcnab2-217,Chd5;Chd5;Chd5;Chd5;Kcnab2;Kcnab2;Kcnab2;Kcnab2;Kcnab2,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,7,269610,ENSMUSG00000005045,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24998,cg10671915,-0.00000256,0.00000362,-0.705676138,0.480919504,loss,ns,-0.0000188,0.00000616,-3.04555747,0.002521852,neg,ns,-0.002203859,0.001804176,-1.221532035,0.222812765,neg,ns,0.652059932,-0.0000884,0.000062,-1.425061831,0.155145335,neg,ns,0.898948696,Srgap2,Srgap2_Exon,1,131296405,131296454,131296453,131296454,50,+,GTGGCTCAGAAATGACCTCAATCTCAGACTTGGGGCTGGACCTCTCCACG,"Exon (Srgap2-201/Srgap2, exon 21 of 23)",1,131285251,131527347,242097,2,Srgap2-201,230893,Srgap2-201;Srgap2-205;Srgap2-212;Srgap2-204;Srgap2-210;Srgap2-209;Srgap2-208;Srgap2-203,Srgap2;Srgap2;Srgap2;Srgap2;Srgap2;Srgap2;Srgap2;Srgap2,0;0;0;0;0;0;0;67610,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,14270,ENSMUSG00000026425,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24988,cg18404903,-0.00000465,0.000012,-0.388751992,0.697726487,loss,ns,0.0000619,0.0000203,3.045357697,0.002523479,pos,ns,0.012101865,0.005950145,2.033877389,0.042815163,pos,ns,1.368402396,-0.000389627,0.000204625,-1.904102737,0.057822478,neg,ns,0.725677678,Galnt17,Galnt17_Exon,5,131081560,131081609,131081560,131081561,50,+,CGGCGTCCCACCAGTCTTTTGGGGGGCTGATGTACATGCACCACAGCTCC,"Exon (Galnt17-201/Galnt17, exon 5 of 11)",5,130872082,131308497,436416,2,Galnt17-201,226888,Galnt17-201;Galnt17-202;Galnt17-203,Galnt17;Galnt17;Galnt17,0;0;225306,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,212996,ENSMUSG00000034040,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14126,cg01119116,0.000000841,0.00000584,0.143877305,0.885690841,gain,ns,0.0000302,0.00000993,3.045047032,0.00252601,pos,ns,0.008578725,0.002907788,2.95025838,0.003416967,pos,ns,2.466359233,-0.000228027,0.0001,-2.280299163,0.023268634,neg,ns,0.14453644,Hoxd10,Hoxd10_Exon,2,74692309,74692358,74692357,74692358,50,-,ATCCAATTGCTGCATGTATTCTGATAAGCGCAACAAACTCATTTCGGCCG,Promoter (<=1kb),2,74691924,74695105,3182,1,Hoxd10-201,385,Hoxd10-201,Hoxd10,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,21,24,15430,ENSMUSG00000050368,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
16902,cg26149636,0.000000237,0.00000225,0.105652742,0.915926208,gain,ns,-0.0000116,0.00000382,-3.042958448,0.002543089,neg,ns,-0.001694986,0.001118478,-1.515438986,0.130680235,neg,ns,0.883790094,0.0000728,0.0000385,1.89334047,0.059243689,pos,ns,0.937167754,Eif4e2,Eif4e2_Exon,1,87226189,87226238,87226237,87226238,50,+,TCCCAACACCATTATGGAATACAAAACTCACACCGACAGCATCAAGTACG,"Exon (Eif4e2-205/Eif4e2, exon 6 of 6)",1,87213914,87226607,12694,1,Eif4e2-205,12275,Eif4e2-205;Eif4e2-206;Eif4e2-201;Eif4e2-202;Eif4e2-207;Eif4e2-203;Eif4e2-208;Eif4e2-204,Eif4e2;Eif4e2;Eif4e2;Eif4e2;Eif4e2;Eif4e2;Eif4e2;Eif4e2,0;0;0;0;0;0;12210;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,6,26987,ENSMUSG00000026254,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4938,cg00170518,0.0000632,0.00000866,7.30224588,2.40E-12,gain,yes,-0.0000448,0.0000147,-3.041657666,0.002553779,neg,ns,0.014540394,0.004310366,3.373354888,0.000836845,pos,ns,3.07735508,-0.000480699,0.000148233,-3.242859974,0.001312342,neg,ns,0.837206359,Ass1,Ass1_Intron,2,31495348,31495397,31495396,31495397,50,+,TTACTTGCTTTAACTTCATACGGTCCACAGTGAAAGAGTTCATTCAGTCG,"Intron (Ass1-201/Ass1, intron 9 of 15)",2,31470207,31520672,50466,1,Ass1-201,25141,Ass1-201;Ass1-202,Ass1;Ass1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,9,11898,ENSMUSG00000076441,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22103,cg16159306,0.0000517,0.0000154,3.365502754,0.000860156,gain,ns,-0.0000794,0.0000261,-3.041655991,0.002553793,neg,ns,0.015413976,0.007647055,2.015674767,0.044696567,pos,ns,1.349725834,-0.001605882,0.000262982,-6.106442848,3.05E-09,neg,yes,0.388594691,Zdhhc17,Zdhhc17_threeUTR,10,110962351,110962400,110962351,110962352,50,+,CGGTCCAGCTGAGCATCCCTTCCACTAGAGGGCCATGTGACACCTAAGGA,3' UTR,10,110941780,111010066,68287,2,Zdhhc17-201,47666,Zdhhc17-201;Zdhhc17-203;Zdhhc17-210;Zdhhc17-207;Zdhhc17-206;Zdhhc17-202,Zdhhc17;Zdhhc17;Zdhhc17;Zdhhc17;Zdhhc17;Zdhhc17,0;0;0;-1268;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,4,320150,ENSMUSG00000035798,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2845,cg14539088,-0.0000326,0.0000102,-3.212486114,0.001454258,loss,ns,0.0000525,0.0000173,3.041576327,0.002554449,pos,ns,-0.006897823,0.005054895,-1.364582974,0.173373857,neg,ns,0.761016389,0.000639111,0.000173837,3.676489014,0.000278616,pos,ns,0.727155883,Zfp503,Zfp503_Intergenic_downstream,14,21967804,21967853,21967852,21967853,50,+,AGCTGGGGAAATGTCCCACATTCCATGTCACAATAAATCACTGCTTCACG,Distal Intergenic,14,21983959,21989601,5643,2,Zfp503-201,21748,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,27,218820,ENSMUSG00000039081,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25629,cg22037288,0.0000123,0.00000567,2.169049811,0.030838743,gain,ns,-0.0000293,0.00000964,-3.041540811,0.002554741,neg,ns,0.009416682,0.002823968,3.334556584,0.000958046,pos,ns,3.018613622,-0.000357486,0.0000971,-3.681016305,0.000273919,neg,ns,0.85815061,Epo,Epo_Exon,5,137529443,137529492,137529491,137529492,50,-,CAGGTGGTATCCCCAGAGCTGGTGATGATTTGGTTGTCATCCAGGAAGCG,"Exon (Gnb2-201/Gnb2, exon 7 of 10)",5,137483020,137533242,50223,2,Epo-202,3750,Epo-202;Gigyf1-201;Gnb2-201;Gnb2-213;Gnb2-209;Gnb2-203;Gnb2-204;Gnb2-202;Gnb2-212;Gnb2-214;Gnb2-215;Gnb2-208;Gnb2-205;Gnb2-210;Gnb2-211;Gnb2-206;Gnb2-207,Epo;Gigyf1;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,9,13856,ENSMUSG00000029711,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17482,cg20635820,-0.0000159,0.0000185,-0.857628686,0.39176008,loss,ns,-0.0000956,0.0000314,-3.040605811,0.002562454,neg,ns,-0.022099145,0.009213314,-2.39860963,0.017048071,neg,ns,1.768324766,0.000333955,0.000316845,1.054001156,0.292703185,pos,ns,0.623143456,Crebzf,Crebzf_threeUTR,7,90445452,90445501,90445452,90445453,50,+,CGGGACCAGCTGCTGGCCACATTTCCTGCTTTATTTTAAAAGGTAGTATA,3' UTR,7,90442729,90446104,3376,1,Crebzf-201,2723,Crebzf-201;Crebzf-203;Crebzf-204;Crebzf-205;Crebzf-202;Crebzf-208;Crebzf-207;Crebzf-209;Crebzf-206,Crebzf;Crebzf;Crebzf;Crebzf;Crebzf;Crebzf;Crebzf;Crebzf;Crebzf,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,9,233490,ENSMUSG00000051451,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U4,Pr-F
10883,cg14306227,0.0000282,0.0000108,2.613845575,0.009389928,gain,ns,-0.0000556,0.0000183,-3.040333052,0.002564708,neg,ns,0.037990885,0.005361192,7.086275758,9.32E-12,pos,yes,11.03050748,-0.001272187,0.000184371,-6.900150063,2.93E-11,neg,yes,0.761042819,Ralgapa1,Ralgapa1_Exon,12,55722779,55722828,55722827,55722828,50,+,GCTCGTTCAACAGTGAATGGTTCCAAGATGTCAGAAGTGCTGCTACTTCG,"Exon (Ralgapa1-211/Ralgapa1, exon 17 of 40)",12,55602896,55820767,217872,2,Ralgapa1-211,97939,Ralgapa1-211;Ralgapa1-212;Ralgapa1-201;Ralgapa1-202;Ralgapa1-204;Ralgapa1-207;Ralgapa1-208,Ralgapa1;Ralgapa1;Ralgapa1;Ralgapa1;Ralgapa1;Ralgapa1;Ralgapa1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,15,56784,ENSMUSG00000021027,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21840,cg09462569,-0.0000264,0.0000102,-2.600057701,0.009767123,loss,ns,0.0000525,0.0000173,3.039632136,0.002570508,pos,ns,0.012110421,0.005062991,2.391950103,0.017354683,pos,ns,1.760583306,-0.000324998,0.000174116,-1.86656464,0.062906368,neg,ns,0.489253661,Lmo1,Lmo1_Intergenic_upstream,7,109241228,109241277,109241228,109241229,50,-,CGTTTACTGACCCAAGAGGCACAATTTTGTCTTTGGTAAATTTATTTTGA,Distal Intergenic,7,109138675,109175207,36533,2,Lmo1-202,-66070,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,34,66,109594,ENSMUSG00000036111,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17155,cg26284526,-0.00000779,0.00000528,-1.476585244,0.140801935,loss,ns,-0.0000272,0.00000897,-3.037437664,0.002588745,neg,ns,-0.012957385,0.002626855,-4.932661729,0.00000133,neg,ns,5.877651561,0.000341915,0.0000903,3.784873671,0.000184603,pos,ns,0.837776354,Rps6-ps2,Rps6-ps2_Intergenic_downstream,8,88881708,88881757,88881708,88881709,50,-,CGTGGCGGCCGAGCTGTCTTGTCCAATTCACTGAAGCCAGGCCTCTAATC,Distal Intergenic,8,88806391,88807137,747,1,Rps6-ps2-201,75366,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,14,675985,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18645,cg11722817,0.0000287,0.00000779,3.691292377,0.000263534,gain,ns,0.0000402,0.0000132,3.037404088,0.002589025,pos,ns,0.004692455,0.003876257,1.210563407,0.226984935,pos,ns,0.644002965,0.0000509,0.000133304,0.381623819,0.703001858,pos,ns,0.797755341,Skap1,Skap1_Intergenic_upstream,11,96448144,96448193,96448192,96448193,50,-,ATGGGAGGTGACAGTTCATTTTGCCAGTGACAGTCTGTCGGTCTCGCTCG,Distal Intergenic,11,96464593,96759130,294538,1,Skap1-203,-16449,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,46,78473,ENSMUSG00000057058,conserved gene and region,11,96448182,96448434,253,*,253,14,0.584980237,0.682860999,0.055335968,0.000000134,CpGisland,TRUE,U11,Tr-P
19809,cg11051128,-0.00000988,0.00000503,-1.962811378,0.05056207,loss,ns,-0.000026,0.00000855,-3.037292374,0.002589957,neg,ns,-0.006915238,0.002505676,-2.759828834,0.006127268,neg,ns,2.212733154,0.000213213,0.0000862,2.474330847,0.01388358,pos,ns,0.904050553,Ppp2r3a,Ppp2r3a_Exon,9,101198620,101198669,101198668,101198669,50,-,AAATTTCAAACCTGTGTCTGCTGAAATGACTTCAGCCGCTTCTTAAACCG,"Exon (Ppp2r3a-201/Ppp2r3a, exon 1 of 13)",9,101105084,101251795,146712,2,Ppp2r3a-202,53126,Ppp2r3a-202;Ppp2r3a-201;Ppp2r3a-206;Ppp2r3a-205;Ppp2r3a-204,Ppp2r3a;Ppp2r3a;Ppp2r3a;Ppp2r3a;Ppp2r3a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,235542,ENSMUSG00000043154,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27511,cg11272860,0.0000206,0.0000151,1.367312287,0.172518005,gain,ns,0.0000777,0.0000256,3.036059138,0.002600263,pos,ns,0.009273507,0.007500254,1.236425779,0.217236288,pos,ns,0.663067627,0.000427473,0.000257933,1.657299865,0.098470488,pos,ns,0.683087577,Pbx1,Pbx1_Intergenic_upstream,1,168676992,168677041,168677040,168677041,50,+,GGAGCGTGTGGTTCAACGATGACAGATTGAGAAGAACTGTCCCCCTCTCG,Distal Intergenic,1,168119364,168432270,312907,2,Pbx1-208,-244722,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,17,84,18514,ENSMUSG00000052534,conserved gene and region,1,168676888,168677048,161,*,161,10,0.527950311,0.897435897,0.062111801,0.00000521,CpGisland,TRUE,U15,NS
4105,cg27416592,-0.00000125,0.0000155,-0.080509464,0.935884019,loss,ns,0.00008,0.0000264,3.03537284,0.002606014,pos,ns,0.010494297,0.007721977,1.359016938,0.175129117,pos,ns,0.756641641,0.0000616,0.000265558,0.231889238,0.816777042,pos,ns,0.761179002,Gm12070,Gm12070_Intergenic_downstream,11,26807039,26807088,26807087,26807088,50,-,AGTAATAATAATTATCACACATGACAATCACCTGTGACCACTTCCCCGCG,Distal Intergenic,11,26786633,26787634,1002,1,Gm12070-201,20455,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,8,654472,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26806,cg18321687,0.00000507,0.00000149,3.412015247,0.000730416,gain,ns,-0.00000766,0.00000252,-3.035192237,0.002607529,neg,ns,0.000145628,0.000739174,0.197014243,0.843945498,pos,ns,0.073685599,0.000000862,0.0000254,0.033895877,0.972981995,pos,ns,0.969034249,Zzz3,Zzz3_Exon,3,152427340,152427389,152427340,152427341,50,+,CGATCTACTCGTGTTACAAGATCAACAGTGGGGTTAAACGGCTTGGATGA,"Exon (Zzz3-206/Zzz3, exon 4 of 4)",3,152395473,152459474,64002,1,Zzz3-204,31867,Zzz3-204;Zzz3-206;Zzz3-202;Zzz3-207;Zzz3-208;Zzz3-210;Zzz3-201;Zzz3-203,Zzz3;Zzz3;Zzz3;Zzz3;Zzz3;Zzz3;Zzz3;Zzz3,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,7,108946,ENSMUSG00000039068,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26483,cg26227235,-0.00000578,0.00000689,-0.838779791,0.402239203,loss,ns,-0.0000355,0.0000117,-3.035162522,0.002607779,neg,ns,-0.009787949,0.003430832,-2.852937246,0.004623,neg,ns,2.335076068,0.000345623,0.000117986,2.92935122,0.003648691,pos,ns,0.857140042,Casz1,Casz1_Intergenic_upstream,4,148753417,148753466,148753465,148753466,50,+,CCAGTTGCTGTTGCTTCTATAAACAAGCATTTTGGTGACCTTCCCCTCCG,Distal Intergenic,4,148804429,148945129,140701,1,Casz1-201,-50963,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,14,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24458,cg03411242,-0.0000037,0.00000528,-0.700079774,0.484402526,loss,ns,0.0000272,0.00000898,3.035135404,0.002608007,pos,ns,0.003704979,0.002629621,1.408940547,0.159854999,pos,ns,0.796273778,-0.000108984,0.0000904,-1.205140999,0.229068026,neg,ns,0.107927384,Slc35f3,Slc35f3_Exon,8,126382125,126382174,126382125,126382126,50,+,CGATTTTTTGGAGACAATGGCTTGACTTTGAAGGTGTTTTTTACCAAGGC,"Exon (Slc35f3-203/Slc35f3, exon 4 of 8)",8,126138995,126395978,256984,1,Slc35f3-203,243130,Slc35f3-203;Slc35f3-202;Slc35f3-201,Slc35f3;Slc35f3;Slc35f3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,210027,ENSMUSG00000057060,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1720,cg13127008,0.0000141,0.0000295,0.479582877,0.63186219,gain,ns,-0.000152121,0.0000501,-3.034915005,0.002609857,neg,ns,-0.010281238,0.014684531,-0.700140728,0.484364516,neg,ns,0.31482768,-0.000361272,0.000505,-0.715390451,0.474906265,neg,ns,0.340223895,Tle4,Tle4_Intergenic_upstream,19,14777482,14777531,14777530,14777531,50,+,TTTCTCAGTTTCCAGCTGGCACGGGCTGCTGACTGGAGCCCTAATTAACG,Distal Intergenic,19,14448150,14598051,149902,2,Tle4-202,-179431,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,29,21888,ENSMUSG00000024642,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9820,cg24365016,-0.00000062,0.00000271,-0.228650895,0.819291025,loss,ns,0.000014,0.0000046,3.033164372,0.002624601,pos,ns,0.004662002,0.001348791,3.45642918,0.000623789,pos,ns,3.20496229,-0.00012009,0.0000464,-2.588984459,0.010079819,neg,ns,0.957275854,Gm43015,Gm43015_Intergenic_downstream,5,50950754,50950803,50950754,50950755,50,-,CGCTATAATTCTTTGAGAAACAGATAGTTATGTGAGAGTCATATGATGGT,Distal Intergenic,5,50921342,50921906,565,1,Gm43015-201,29461,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,4,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1340,cg10196526,0.00000195,0.0000174,0.112394746,0.910583165,gain,ns,0.0000894,0.0000295,3.033099812,0.002625146,pos,ns,0.010868201,0.008636677,1.258377528,0.209202168,pos,ns,0.67943382,0.000110521,0.000297015,0.372105077,0.710068854,pos,ns,0.584574427,Cadps,Cadps_Intron,14,12389021,12389070,12389069,12389070,50,-,CATGTTACAGGAAGCCACAGCTCGCCCCAGGGGTGCTGCAAACAGACACG,"Intron (Cadps-210/Cadps, intron 27 of 28)",14,12372563,12823053,450491,2,Cadps-210,433983,Cadps-210;Cadps-202;Cadps-203;Cadps-204;Cadps-201;Cadps-212;Cadps-208,Cadps;Cadps;Cadps;Cadps;Cadps;Cadps;Cadps,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,34,27062,ENSMUSG00000054423,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8158,cg25668851,-0.0000031,0.00000493,-0.630384704,0.528907326,loss,ns,0.0000254,0.00000837,3.032015465,0.002634319,pos,ns,-0.003265288,0.002451462,-1.331976131,0.183846465,neg,ns,0.735544716,0.0000113,0.0000843,0.133629219,0.893782484,pos,ns,0.808725732,Pax2,Pax2_Intron,19,44802855,44802904,44802903,44802904,50,+,AATGGCCTTTACTGTCGCTCTGATGCAGTCATTTGCAACCCTGCTTTCCG,"Intron (Pax2-203/Pax2, intron 5 of 9)",19,44756045,44837851,81807,1,Pax2-203,46810,Pax2-203;Pax2-201;Pax2-202,Pax2;Pax2;Pax2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,35,166,18504,ENSMUSG00000004231,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27176,cg05513775,-0.00000345,0.00000862,-0.400466421,0.689088851,loss,ns,0.0000444,0.0000146,3.031990522,0.00263453,pos,ns,0.029946243,0.004290067,6.980366887,1.79E-11,pos,yes,10.74612536,-0.000745124,0.000147535,-5.050489803,0.000000754,neg,yes,0.809512035,Rabgap1l,Rabgap1l_threeUTR,1,160219348,160219397,160219348,160219349,50,-,CGATTATAAAAGTAAACATTTGTTGGGACAATGTACAATAAATTGCACTT,3' UTR,1,160219174,160351571,132398,2,Rabgap1l-202,132174,Rabgap1l-202,Rabgap1l,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,5,29809,ENSMUSG00000026721,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24447,cg22569774,0.0000819,0.00000584,14.01888758,6.41E-35,gain,yes,-0.0000301,0.00000993,-3.031202319,0.002641216,neg,ns,0.003749385,0.002908411,1.289152498,0.198306171,pos,ns,0.702663772,-0.000100363,0.00010002,-1.003424279,0.31643878,neg,ns,0.132521519,Slc35f3,Slc35f3_Exon,8,126298814,126298863,126298814,126298815,50,+,CGCTCAGCGCCTGCAACAGTCCGGTCCTGACCCTTACCAAAGTGGAAGGT,"Exon (Slc35f3-201/Slc35f3, exon 1 of 7)",8,126138995,126395978,256984,1,Slc35f3-203,159819,Slc35f3-203;Slc35f3-202;Slc35f3-201,Slc35f3;Slc35f3;Slc35f3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,210027,ENSMUSG00000057060,conserved gene and region,8,126298424,126299049,626,*,626,68,0.739616613,0.830757221,0.108626198,2.03E-54,CpGisland,TRUE,U3,Pr-B
21962,cg26693178,-0.0000105,0.00000284,-3.712229315,0.000243511,loss,ns,-0.0000146,0.00000483,-3.03058913,0.002646429,neg,ns,-0.003899119,0.001413733,-2.758031066,0.006160241,neg,ns,2.210402298,-0.0000198,0.0000486,-0.407622496,0.683832199,neg,ns,0.937995248,Ap1g1,Ap1g1_Exon,8,109833523,109833572,109833523,109833524,50,-,CGGTTTTGACTATCATGGATATTAAGTCAGAGAGTGGATTGCGAGTAAGT,"Exon (Ap1g1-202/Ap1g1, exon 10 of 24)",8,109778554,109864204,85651,1,Ap1g1-202,54969,Ap1g1-202;Ap1g1-201,Ap1g1;Ap1g1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,16,11765,ENSMUSG00000031731,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11508,cg01939401,0.00000945,0.00000536,1.764765159,0.078587899,gain,ns,-0.0000276,0.0000091,-3.030182476,0.002649891,neg,ns,-0.007134717,0.002665461,-2.676729113,0.007830043,neg,ns,2.106235835,-0.0000763,0.0000917,-0.831834591,0.406142616,neg,ns,0.795523418,Nptn,Nptn_Exon,9,58618952,58619001,58619000,58619001,50,+,GAGGCAAAACCCCTCCATAACATGGATTCGAGCCCAGGCCACCATAAGCG,"Exon (Nptn-212/Nptn, exon 2 of 8)",9,58582240,58651318,69079,1,Nptn-212,36712,Nptn-212;Nptn-201;Nptn-213;Nptn-206;Nptn-203;Nptn-202;Nptn-211;Nptn-207;Nptn-204,Nptn;Nptn;Nptn;Nptn;Nptn;Nptn;Nptn;Nptn;Nptn,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,20,22,20320,ENSMUSG00000032336,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5087,cg05597983,0.00000992,0.00000483,2.051847992,0.041024167,gain,ns,-0.0000249,0.00000821,-3.029852429,0.002652704,neg,ns,-0.000516737,0.002406299,-0.214743402,0.830108578,neg,ns,0.080865098,-0.000044,0.0000828,-0.531853228,0.595208583,neg,ns,0.900605688,Fbxo45,Fbxo45_Exon,16,32233204,32233253,32233252,32233253,50,+,TATCCACGTTCAAAAGCTAAAGTCTTATCTTCCATGTCCAAGATGACTCG,"Exon (Fbxo45-201/Fbxo45, exon 3 of 3)",16,32230112,32247158,17047,2,Fbxo45-201,13905,Fbxo45-201,Fbxo45,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,268882,ENSMUSG00000035764,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12192,cg09951047,-0.00000112,0.0000265,-0.042255365,0.96632233,loss,ns,-0.000136635,0.0000451,-3.029634125,0.002654566,neg,ns,0.098625171,0.013212673,7.464437459,8.52E-13,pos,yes,12.06953112,-0.003009788,0.000454383,-6.62390572,1.55E-10,neg,yes,0.751945593,Aopep,Aopep_threeUTR,13,63301211,63301260,63301211,63301212,50,+,CGGTGCCTACTGAGCTGATATCAGTTCTCATTTTACACACTGGCTCAGTT,Promoter (<=1kb),13,63301255,63302560,1306,1,Aopep-222,0,Aopep-202;Aopep-201;Aopep-208;Aopep-219;Aopep-224;Aopep-227;Aopep-203;Aopep-216;Aopep-209;Aopep-210;Aopep-228;Aopep-213;Aopep-225;Aopep-226;Aopep-221;Aopep-214;Aopep-205;Aopep-222;Aopep-211;Fancc-218;Fancc-201,Aopep;Aopep;Aopep;Aopep;Aopep;Aopep;Aopep;Aopep;Aopep;Aopep;Aopep;Aopep;Aopep;Aopep;Aopep;Aopep;Aopep;Aopep;Aopep;Fancc;Fancc,0;0;0;0;0;0;0;0;0;0;0;0;0;0;22252;19304;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,5,7,72061,ENSMUSG00000021458,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11045,cg08817724,-0.0000201,0.0000111,-1.808875348,0.071439078,loss,ns,0.0000571,0.0000188,3.029163901,0.002658581,pos,ns,0.014125664,0.005522264,2.557947871,0.011004533,pos,ns,1.958428371,-0.000271427,0.00018991,-1.429236761,0.153943103,neg,ns,0.725890747,Gm18027,Gm18027_Intergenic_upstream,12,56455531,56455580,56455579,56455580,50,+,CTATATTATTTCATTTGGCCCTGCCAATATTTATTAGATCATGCAGCCCG,Distal Intergenic,12,56409939,56410557,619,2,Gm18027-201,-44974,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,8,100416309,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8841,cg18471385,0.0000258,0.0000154,1.670724293,0.095785373,gain,ns,-0.0000793,0.0000262,-3.028838119,0.002661365,neg,ns,0.055356207,0.007671183,7.216123666,4.14E-12,pos,yes,11.3831592,-0.000789589,0.000263811,-2.993005912,0.00298454,neg,ns,0.641936162,Vegfa,Vegfa_Exon,17,46020985,46021034,46021033,46021034,50,-,ACCAACCTGCAAGTACGTTCGTTTAACTCAAGCTGCCTCGCCTTGCAACG,"Exon (Vegfa-202/Vegfa, exon 6 of 7)",17,46016993,46031815,14823,2,Vegfa-201,10781,Vegfa-201;Vegfa-202;Vegfa-210;Vegfa-207;Vegfa-205;Vegfa-208;Vegfa-204;Vegfa-206;Vegfa-203;Vegfa-209,Vegfa;Vegfa;Vegfa;Vegfa;Vegfa;Vegfa;Vegfa;Vegfa;Vegfa;Vegfa,0;0;0;0;0;0;0;0;0;10322,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,7,22339,ENSMUSG00000023951,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26858,cg13635516,0.0000611,0.00000974,6.273319674,1.19E-09,gain,yes,-0.0000501,0.0000165,-3.027994536,0.002668589,neg,ns,-0.01352109,0.004848493,-2.788720316,0.00561882,neg,ns,2.250354892,0.000136226,0.000166739,0.817002183,0.414554605,pos,ns,0.529051093,Nol4l,Nol4l_Exon,2,153491738,153491787,153491786,153491787,50,-,CCAAGACCTCCTTTCTGCTTCGCTGAACCTCCATCTTCTTTCAAATCACG,"Exon (Nol4l-203/Nol4l, exon 1 of 8)",2,153407462,153529971,122510,2,Nol4l-201,38184,4930404H24Rik-201;Nol4l-201;Nol4l-203,4930404H24Rik;Nol4l;Nol4l,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,14,329540,ENSMUSG00000061411,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23313,cg02188840,-0.00000832,0.00000565,-1.471756855,0.142100973,loss,ns,-0.0000291,0.0000096,-3.027764244,0.002670564,neg,ns,0.003767548,0.00281197,1.339825118,0.181283507,pos,ns,0.741641705,-0.000530468,0.0000967,-5.485517029,8.57E-08,neg,yes,0.772797864,Tnrc6c,Tnrc6c_Exon,11,117736003,117736052,117736051,117736052,50,+,CCTGGATCATGAGCCGGCTGATCAAACAACTCACAGACATGGGCTTCCCG,"Exon (Tnrc6c-201/Tnrc6c, exon 8 of 22)",11,117654289,117763437,109149,1,Tnrc6c-201,81714,Tnrc6c-201;Tnrc6c-205;Tnrc6c-202;Tnrc6c-203,Tnrc6c;Tnrc6c;Tnrc6c;Tnrc6c,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,217351,ENSMUSG00000025571,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25196,cg00466720,0.00000299,0.00000283,1.055189113,0.29216051,gain,ns,0.0000146,0.00000481,3.02761954,0.002671806,pos,ns,0.002143496,0.001409147,1.521130247,0.129246473,pos,ns,0.8885813,0.000018,0.0000485,0.370587477,0.711197904,pos,ns,0.925491691,Arid1a,Arid1a_Exon,4,133681250,133681299,133681250,133681251,50,-,CGCTTGGCAAGAGAATCCTGCCAGTCCAGAAGGGTACACAGTGGGGTCTC,"Exon (Arid1a-202/Arid1a, exon 20 of 20)",4,133679008,133753611,74604,2,Arid1a-202,72312,Arid1a-202;Arid1a-205;Arid1a-201,Arid1a;Arid1a;Arid1a,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,13,31,93760,ENSMUSG00000007880,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21668,cg19190454,0.0000184,0.00000437,4.204407394,0.0000343,gain,ns,-0.0000225,0.00000742,-3.027582826,0.002672121,neg,ns,-0.003606935,0.002173532,-1.659481164,0.098030126,neg,ns,1.008640438,-0.0000187,0.0000747,-0.25077871,0.802151336,neg,ns,0.851033107,Zfhx3,Zfhx3_Exon,8,108800241,108800290,108800289,108800290,50,-,GGTGTCAGAGGAGCTGATGAACCTGGGCGAGAGCTTCATCCAGACCAACG,"Exon (Zfhx3-204/Zfhx3, exon 9 of 16)",8,107942644,108961630,1018987,1,Zfhx3-204,857597,Zfhx3-204;Zfhx3-202;Zfhx3-201,Zfhx3;Zfhx3;Zfhx3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,46,177,11906,ENSMUSG00000038872,conserved gene and region,8,108800199,108800500,302,*,302,21,0.612582782,0.741407529,0.069536424,5.06E-13,CpGisland,TRUE,U11,Tr-P
21700,cg06637343,0.00000834,0.00000299,2.78818314,0.005627913,gain,ns,-0.0000154,0.00000508,-3.027003828,0.002677095,neg,ns,-0.0047325,0.00148944,-3.177368635,0.001635993,neg,ns,2.786218442,0.0000651,0.0000512,1.271629357,0.204458033,pos,ns,0.910539653,Prpf38b,Prpf38b_threeUTR,3,108905870,108905919,108905918,108905919,50,-,GGAAACGCATAATCCATGATGACCATTGTCTCTGAAAAGGGTCATTACCG,3' UTR,3,108902805,108911696,8892,2,Prpf38b-204,5777,Prpf38b-204;Prpf38b-201;Prpf38b-208;Prpf38b-202;Prpf38b-203;Prpf38b-206;Prpf38b-205;Prpf38b-207,Prpf38b;Prpf38b;Prpf38b;Prpf38b;Prpf38b;Prpf38b;Prpf38b;Prpf38b,0;0;0;-285;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,13,66921,ENSMUSG00000027881,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7205,cg08514277,0.00000435,0.00000453,0.960123668,0.337741229,gain,ns,0.0000233,0.0000077,3.026808809,0.002678773,pos,ns,0.00111549,0.002255802,0.494498333,0.62130453,pos,ns,0.20669548,0.0000622,0.0000776,0.801832041,0.423264329,pos,ns,0.881191798,Gria3,Gria3_Exon,X,41654184,41654233,41654184,41654185,50,-,CGATGAAAGTTGGTGGAAATCTGGATTCCAAAGGCTATGGTGTGGCAACC,"Exon (Gria3-202/Gria3, exon 14 of 17)",20,41401128,41676585,275458,1,Gria3-202,253056,Gria3-202;Gria3-201;Gria3-208;Gria3-206;Gria3-209,Gria3;Gria3;Gria3;Gria3;Gria3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,26,53623,ENSMUSG00000001986,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16214,cg07003873,-0.00000806,0.0000153,-0.525730308,0.599451462,loss,ns,0.0000788,0.000026,3.025716298,0.002688188,pos,ns,0.013358983,0.007631323,1.750546135,0.081013336,pos,ns,1.091443486,-0.000396111,0.000262441,-1.509336915,0.13223123,neg,ns,0.725026111,Cacna1a,Cacna1a_Exon,8,84594148,84594197,84594148,84594149,50,-,CGATGCCTGGAACATCTTCGACTTTGTGACTGTTCTGGGCAGCATCACCG,"Exon (Cacna1a-213/Cacna1a, exon 33 of 49)",8,84338639,84640246,301608,1,Cacna1a-213,255509,Cacna1a-213;Cacna1a-201;Cacna1a-202;Cacna1a-211,Cacna1a;Cacna1a;Cacna1a;Cacna1a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,12,12286,ENSMUSG00000034656,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19176,cg23526824,-0.0000129,0.00000414,-3.107496905,0.002061559,loss,ns,-0.0000213,0.00000703,-3.02547449,0.002690276,neg,ns,0.003636148,0.00205964,1.765429402,0.078476062,pos,ns,1.1052628,-0.000225536,0.0000708,-3.184144923,0.001599368,neg,ns,0.935788913,Thra,Thra_Exon,11,98764361,98764410,98764361,98764362,50,+,CGCAAACACAACATTCCGCACTTCTGGCCCAAGCTGCTGATGAAGGTGAC,"Exon (Thra-201/Thra, exon 9 of 10)",11,98741811,98769006,27196,1,Thra-201,22550,Nr1d1-201;Nr1d1-202;Thra-201;Thra-202;Thra-203,Nr1d1;Nr1d1;Thra;Thra;Thra,0;6016;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,13,18,21833,ENSMUSG00000058756,conserved gene and region,11,98764222,98764378,157,*,157,10,0.592356688,0.751196172,0.063694268,0.00000418,CpGisland,TRUE,U10,Tr-S
14998,cg05156492,-0.000013,0.00000652,-2.000116894,0.046359713,loss,ns,0.0000335,0.0000111,3.025441003,0.002690565,pos,ns,-0.000408145,0.003246754,-0.125708495,0.900044163,neg,ns,0.04573618,0.00010785,0.000111656,0.965915496,0.334839387,pos,ns,0.88765621,Pou4f2,Pou4f2_Intergenic_downstream,8,78422081,78422130,78422081,78422082,50,+,CGATCAGATATAAATTAGAGCCCCAACAGTTATTTGCCTTAAGGACTTTA,Distal Intergenic,8,78433010,78436645,3636,2,Pou4f2-201,14515,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,23,18997,ENSMUSG00000031688,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
15339,cg01726897,-0.00000245,0.0000056,-0.437446503,0.662092164,loss,ns,-0.0000288,0.00000951,-3.025168363,0.002692921,neg,ns,-0.003602329,0.002786629,-1.292719242,0.197070827,neg,ns,0.705377661,0.0000234,0.0000958,0.244515455,0.806993396,pos,ns,0.934588993,Zfp207,Zfp207_Exon,11,80395497,80395546,80395497,80395498,50,-,CGACCTCCGATGGGAATGAGACCTCCTGTAATGTCGCAAGGTGGCCGTTA,"Exon (Zfp207-206/Zfp207, exon 11 of 11)",11,80383279,80396245,12967,1,Zfp207-206,12218,Zfp207-206;Zfp207-207;Zfp207-208;Zfp207-201;Zfp207-203;Zfp207-202;Zfp207-205;Zfp207-204,Zfp207;Zfp207;Zfp207;Zfp207;Zfp207;Zfp207;Zfp207;Zfp207,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,22680,ENSMUSG00000017421,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11396,cg00668187,0.0000251,0.0000153,1.644192261,0.101150184,gain,ns,-0.0000785,0.000026,-3.024823856,0.002695901,neg,ns,0.007835107,0.0076041,1.03037934,0.303635195,pos,ns,0.517647889,-0.00054703,0.000261504,-2.091859509,0.037264446,neg,ns,0.348053446,Galntl6,Galntl6_Exon,8,57958345,57958394,57958345,57958346,50,-,CGAAGGCTCCTCGCATGGCATCCCCAGCTTGTGCCTCATACCCGAAGTGA,"Exon (Galntl6-208/Galntl6, exon 7 of 13)",8,57774052,58912640,1138589,2,Galntl6-208,954246,Galntl6-208;Galntl6-202,Galntl6;Galntl6,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,270049,ENSMUSG00000096914,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13068,cg11756104,0.0000595,0.0000141,4.224783525,0.0000315,gain,ns,0.0000723,0.0000239,3.024242333,0.002700938,pos,ns,0.033038225,0.007005551,4.716006838,0.00000364,pos,ns,5.438682436,-0.000634741,0.00024092,-2.634651042,0.008845443,neg,ns,0.40698765,Aff2,Aff2_fiveUTR,X,69360788,69360837,69360788,69360789,50,+,CGCTATGGATCTATTCGACTTTTTCAGAGACTGGGACTTGGAGCAGCAGT,Promoter (<=1kb),20,69360294,69868037,507744,1,Aff2-201,494,Aff2-201;Aff2-202;Aff2-203,Aff2;Aff2;Aff2,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,5,14266,ENSMUSG00000031189,conserved gene and region,X,69360221,69360804,584,*,584,74,0.739726027,0.934278796,0.126712329,9.30E-65,CpGisland,TRUE,U3,Pr-B
2980,cg15674081,-0.00000174,0.00000136,-1.280355166,0.201377439,loss,ns,0.000007,0.00000231,3.024198518,0.002701318,pos,ns,0.001051069,0.000678205,1.54978114,0.12221432,pos,ns,0.912877904,-0.00000418,0.0000233,-0.179351216,0.857779102,neg,ns,0.972118069,Lrmda,Lrmda_Intron,14,22241069,22241118,22241069,22241070,50,-,CGCTTAACTGGGACTGAAGTATCTGGGTAACAAAAATTGATATAATGACT,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,221357,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206,Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20294,cg13775600,0.0000882,0.00000553,15.95984484,2.85E-42,gain,yes,-0.0000284,0.00000939,-3.02343673,0.00270793,neg,ns,0.00316617,0.002751272,1.150802157,0.250700521,pos,ns,0.600844764,0.0000573,0.0000946,0.606064701,0.5449153,pos,ns,0.112835844,Hoxc5,Hoxc5_Exon,15,102991057,102991106,102991057,102991058,50,+,CGCTCCCCAGACAGTCCCTTTATGGGGCTCAGCAAGAGGCGAGCGTGGTG,"Exon (Hoxc8-201/Hoxc8, exon 1 of 2)",15,102967443,103015676,48234,1,Hoxc5-202,23614,Hoxc5-202;Hoxc8-201;Hoxc8-202,Hoxc5;Hoxc8;Hoxc8,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,72,134,15424,ENSMUSG00000022485,conserved gene and region,15,102990435,102991303,869,*,869,73,0.63406214,0.844205792,0.084004603,1.12E-49,CpGisland,TRUE,U13,Hc-P
10735,cg19289878,-0.00000631,0.00000349,-1.810243922,0.071226139,loss,ns,0.0000179,0.00000593,3.021600856,0.002723926,pos,ns,0.001883094,0.001736067,1.084690158,0.27890174,pos,ns,0.554548777,-0.0000695,0.0000597,-1.164130993,0.245266076,neg,ns,0.906154841,Galnt13,Galnt13_Exon,2,55060516,55060565,55060564,55060565,50,+,AAAATCTGAAGTGTAAGCCCTTTTCTTGGTACCTAGAAAACATCTATCCG,"Exon (Galnt13-204/Galnt13, exon 9 of 12)",2,54436317,55118309,681993,1,Galnt13-204,624199,Galnt13-204;Galnt13-202;Galnt13-203;Galnt13-201,Galnt13;Galnt13;Galnt13;Galnt13,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,271786,ENSMUSG00000060988,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15912,cg19471843,-0.00000424,0.00000277,-1.529307135,0.127208051,loss,ns,0.0000142,0.00000471,3.021478637,0.002724994,pos,ns,0.002515638,0.001381036,1.821557972,0.069485716,pos,ns,1.158104464,-0.0000532,0.0000475,-1.120238354,0.263479335,neg,ns,0.944530719,Cbx3-ps3,Cbx3-ps3_Intergenic_downstream,4,83865396,83865445,83865444,83865445,50,+,TCTGCCTTGTAGCACACAAAAGTAAAATTGTATGTCAGGCCGAGATGTCG,Distal Intergenic,4,83701084,83702036,953,1,Cbx3-ps3-201,164312,Ccdc171-201;Ccdc171-206;Ccdc171-203,Ccdc171;Ccdc171;Ccdc171,0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,4,102641235,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
430,cg24889477,0.00011035,0.00000812,13.58798728,2.60E-33,gain,yes,-0.0000417,0.0000138,-3.021126593,0.002728073,neg,ns,0.008052105,0.004041974,1.992122182,0.047234524,pos,ns,1.325740453,-0.000311755,0.000139003,-2.24279397,0.025616498,neg,ns,0.45592365,Zdhhc14,Zdhhc14_Exon,17,5752699,5752748,5752747,5752748,50,+,AAGACCAGTGCATTCAGAGCACCAAATTCGTTTTGCAGGCTGCAGCCACG,"Exon (Zdhhc14-201/Zdhhc14, exon 9 of 9)",17,5492557,5753811,261255,1,Zdhhc14-201,260142,Zdhhc14-201,Zdhhc14,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,8,224454,ENSMUSG00000034265,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12160,cg06587088,0.0000496,0.0000179,2.769589606,0.005951014,gain,ns,0.000092,0.0000305,3.021004617,0.00272914,pos,ns,0.036369602,0.008921274,4.076727327,0.0000581,pos,ns,4.235808521,-0.00062596,0.000306802,-2.040275812,0.042170009,neg,ns,0.496145155,Skor1,Skor1_Promoter,9,63152170,63152219,63152170,63152171,50,+,CGTATTCTGAATTAAAAATCAGATGTAATTAAGGCGCGCAGGCCCTGTTT,Promoter (3-4kb),9,63138170,63148961,10792,2,Skor1-202,-3209,Skor1-202,Skor1,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,6,15,207667,ENSMUSG00000022245,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
4480,cg02284095,-0.00000293,0.00000289,-1.014287362,0.31123663,loss,ns,-0.0000148,0.00000491,-3.02079841,0.002730945,neg,ns,-0.000666485,0.001439601,-0.462964852,0.643714388,neg,ns,0.191306783,0.000119058,0.0000495,2.404842067,0.016765458,pos,ns,0.671316161,Srsf3,Srsf3_threeUTR,17,29039816,29039865,29039864,29039865,50,+,GCAACATCTGGCAAAACCTTTTCAGCAAATTCTTCCTGGCCGTCAGTCCG,3' UTR,17,29032628,29043373,10746,1,Srsf3-202,7188,Srsf3-202;Srsf3-201;Srsf3-204;Srsf3-210;Srsf3-209;Srsf3-208;Srsf3-203;Srsf3-206;Srsf3-205;Srsf3-207,Srsf3;Srsf3;Srsf3;Srsf3;Srsf3;Srsf3;Srsf3;Srsf3;Srsf3;Srsf3,0;0;0;7143;7127;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,7,20383,ENSMUSG00000071172,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22969,cg02759449,-0.0000103,0.00000479,-2.157463138,0.031737657,loss,ns,0.0000246,0.00000814,3.020626498,0.002732451,pos,ns,0.011177621,0.00238408,4.688442337,0.00000413,pos,ns,5.383952698,-0.000368875,0.000082,-4.499122819,0.00000966,neg,ns,0.849925326,Cnot2,Cnot2_threeUTR,10,116501260,116501309,116501260,116501261,50,+,CGGTCTGCTAATGCTGGGAAATCTGAAAGGTCCAATCCTGTCACATTTTC,3' UTR,10,116485161,116581511,96351,2,Cnot2-210,80202,Cnot2-210;Cnot2-204;Cnot2-212;Cnot2-203;Cnot2-202;Cnot2-213;Cnot2-209;Cnot2-219;Cnot2-214;Cnot2-215;Cnot2-205;Cnot2-207;Cnot2-211;Cnot2-217,Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,9,15,72068,ENSMUSG00000020166,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24473,cg24719233,0.0000579,0.00000563,10.27318167,1.68E-21,gain,yes,-0.0000289,0.00000957,-3.020607518,0.002732618,neg,ns,-0.002702545,0.002802944,-0.96418095,0.335706737,neg,ns,0.474039943,-0.0000956,0.0000964,-0.992190075,0.321878623,neg,ns,0.689904525,Atxn2l,Atxn2l_threeUTR,7,126492127,126492176,126492175,126492176,50,-,TCCACTCATGGAGGTCTCAGGTCGCGGCCAGGACAATCTTCAGTTCCCCG,3' UTR,7,126491708,126503437,11730,2,Atxn2l-201,11261,Atxn2l-201;Atxn2l-203;Atxn2l-206;Atxn2l-205;Atxn2l-202;Tufm-201;Tufm-202;Tufm-203;Tufm-204;Tufm-205;Tufm-206,Atxn2l;Atxn2l;Atxn2l;Atxn2l;Atxn2l;Tufm;Tufm;Tufm;Tufm;Tufm;Tufm,0;0;0;0;0;4766;4749;4498;3513;3441;2756,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,8,13,233871,ENSMUSG00000032637,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11601,cg08864092,0.0000211,0.00000487,4.323958846,0.0000207,gain,ns,-0.000025,0.00000827,-3.020457131,0.002733936,neg,ns,0.015670226,0.002424261,6.463918864,3.96E-10,pos,ns,9.402623873,-0.000658815,0.0000834,-7.902290674,4.82E-14,neg,yes,0.865520562,Arih1,Arih1_Exon,9,59436841,59436890,59436841,59436842,50,+,CGTGTTCGAGACTTTTTACTTGGATTAATTACATGACACTCAGCAAAGAG,"Exon (Arih1-207/Arih1, exon 3 of 14)",9,59388258,59486614,98357,2,Arih1-207,49724,Arih1-207;Arih1-201;Arih1-202;Arih1-204;Arih1-205,Arih1;Arih1;Arih1;Arih1;Arih1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,13,23806,ENSMUSG00000025234,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16417,cg17669678,-0.000007,0.00000257,-2.724880019,0.006797758,loss,ns,-0.0000132,0.00000436,-3.02041323,0.00273432,neg,ns,-0.001151268,0.001278711,-0.900335369,0.368640682,neg,ns,0.433396739,0.0000577,0.000044,1.312241168,0.190409571,pos,ns,0.939120412,Ric8b,Ric8b_Exon,10,84947848,84947897,84947848,84947849,50,-,CGCTGCTAACGCAGATCTTGGAAAGTGCCTTTAGCATCAAGTGGACCGAT,"Exon (Ric8b-201/Ric8b, exon 3 of 10)",10,84917616,85016447,98832,1,Ric8b-201,30232,Ric8b-201;Ric8b-203;Ric8b-202;Ric8b-205,Ric8b;Ric8b;Ric8b;Ric8b,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,14,237422,ENSMUSG00000035620,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14515,cg16067088,0.00000149,0.00000288,0.518021075,0.604813063,gain,ns,0.0000148,0.00000489,3.02006119,0.002737409,pos,ns,0.001730553,0.00143337,1.207331064,0.228225043,pos,ns,0.641636702,-0.0000134,0.0000493,-0.271445094,0.786229395,neg,ns,0.950662036,Ptprd,Ptprd_Intron,4,76137030,76137079,76137078,76137079,50,-,TCAACGTCGATTCAATCTCTTGCTAAGTTGCACAGACAGAAAATGATGCG,"Intron (Ptprd-206/Ptprd, intron 7 of 35)",4,75941238,76449980,508743,2,Ptprd-206,312901,Ptprd-206;Ptprd-204;Ptprd-213;Ptprd-220;Ptprd-203;Ptprd-217;Ptprd-218;Ptprd-219;Ptprd-201;Ptprd-221;Ptprd-205;Ptprd-202,Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd,0;0;0;0;0;0;0;0;0;-2887;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,32,19266,ENSMUSG00000028399,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1508,cg15211069,0.00000262,0.0000103,0.253782151,0.799832098,gain,ns,0.000053,0.0000176,3.019965219,0.002738251,pos,ns,-0.009257659,0.005146337,-1.798883171,0.073009717,neg,ns,1.136619333,0.000272216,0.000176982,1.538097729,0.125044767,pos,ns,0.514573905,Gm50093,Gm50093_Intergenic_downstream,18,13373955,13374004,13374003,13374004,50,+,AATTATTGTGGCAGGCTCCTTCCTGTCTAGAATAACTCCCCGAACAGTCG,Distal Intergenic,18,13372089,13372552,464,1,Gm50093-201,1866,Gm50093-201,Gm50093,1866,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,11,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4490,cg03708116,0.000316957,0.0000247,12.82628026,1.68E-30,gain,yes,-0.000126778,0.000042,-3.019843791,0.002739317,neg,ns,0.026836607,0.012299169,2.18198533,0.029861214,pos,ns,1.524892543,-0.000746589,0.000422967,-1.765122739,0.078527678,neg,ns,0.4031859,Spred3,Spred3_Exon,7,29167866,29167915,29167866,29167867,50,+,CGGACCCGACACACGCTCACCTGGCTGAGGCCCCCGCCCCCCACAGGCAG,Promoter (<=1kb),7,29158829,29168647,9819,2,Spred3-201,732,Ggn-202;Ggn-201;Ggn-203;Ggn-205;Ggn-204;Spred3-201;Spred3-203;Spred3-202;Spred3-204,Ggn;Ggn;Ggn;Ggn;Ggn;Spred3;Spred3;Spred3;Spred3,-2295;-2475;-2475;-2492;-2589;0;-716;0;2496,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,7,101809,ENSMUSG00000037239,conserved gene and region,7,29167803,29167963,161,*,161,14,0.745341615,0.667851852,0.086956522,3.80E-10,CpGisland,TRUE,U13,Hc-P
18115,cg24512570,0.0000147,0.0000034,4.32456752,0.0000206,gain,ns,-0.0000174,0.00000577,-3.019711075,0.002740483,neg,ns,0.001054715,0.001691157,0.623664557,0.533306523,pos,ns,0.273023104,0.0000762,0.0000582,1.309591088,0.191303929,pos,ns,0.870284708,Mbtd1,Mbtd1_Intron,11,93939583,93939632,93939631,93939632,50,-,GTGCGGAGGAGCTTCTCTGGTGACGAAGAGTTGACTCCTCCTCCATATCG,"Intron (Mbtd1-205/Mbtd1, intron 15 of 15)",11,93885852,93946985,61134,1,Mbtd1-205,53731,Mbtd1-205;Mbtd1-202;Mbtd1-206;Mbtd1-214,Mbtd1;Mbtd1;Mbtd1;Mbtd1,0;0;0;14043,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,7,103537,ENSMUSG00000059474,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11997,cg04556560,-0.0000102,0.0000068,-1.501475849,0.134250393,loss,ns,0.0000349,0.0000115,3.019255375,0.002744489,pos,ns,0.011589075,0.003382623,3.426062094,0.00069498,pos,ns,3.15802748,-0.000379363,0.000116328,-3.261143414,0.001233224,neg,ns,0.092527635,Adrb2,Adrb2_Exon,18,62179575,62179624,62179623,62179624,50,-,TGGCAATGGCTGTGATGACCAGCACATTGCCAAACACGATGGCCAGGACG,Promoter (<=1kb),18,62177816,62179959,2144,2,Adrb2-201,335,Adrb2-201,Adrb2,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,11555,ENSMUSG00000045730,conserved gene and region,18,62179489,62180164,676,*,676,53,0.653846154,0.733939692,0.078402367,1.22E-34,CpGisland,TRUE,U1,Pr-A
25621,cg00499973,-0.00000984,0.00000459,-2.144577429,0.032763782,loss,ns,-0.0000235,0.00000779,-3.018969705,0.002747003,neg,ns,-0.010129994,0.002282802,-4.437526007,0.0000127,neg,ns,4.897521323,0.000201207,0.0000785,2.562974983,0.010849794,pos,ns,0.884887298,Jag1,Jag1_Intergenic_upstream,2,137447120,137447169,137447120,137447121,50,+,CGTGGTGTCTGTATGTATGTGGTCATAGATTTGTTATAACCTCTTGTCTG,Distal Intergenic,2,137081456,137116644,35189,2,Jag1-201,-330476,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,16,16449,ENSMUSG00000027276,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
792,cg10263594,-0.00000167,0.00000246,-0.679067111,0.497602012,loss,ns,0.0000126,0.00000417,3.018958543,0.002747102,pos,ns,0.004348565,0.001222053,3.558409753,0.000431506,pos,ns,3.365013228,-0.00011395,0.000042,-2.711393131,0.007073743,neg,ns,0.050391268,Stx5a,Stx5a_Exon,19,8742307,8742356,8742307,8742308,50,+,CGGATCAGGGTGTCTACCTGGGTCTCTCAAAGACACAGGTCCTGTCCCCT,Promoter (<=1kb),19,8741413,8755586,14174,1,Stx5a-218,894,1700092M07Rik-201;1700092M07Rik-202;Stx5a-218;Stx5a-213;Stx5a-203;Stx5a-219;Stx5a-205;Stx5a-201;Stx5a-209;Stx5a-212;Stx5a-202;Stx5a-206;Stx5a-208;Stx5a-211;Stx5a-207;Wdr74-202;Wdr74-201;Wdr74-203;Wdr74-204;Wdr74-207;Wdr74-205;Wdr74-206;Wdr74-208,1700092M07Rik;1700092M07Rik;Stx5a;Stx5a;Stx5a;Stx5a;Stx5a;Stx5a;Stx5a;Stx5a;Stx5a;Stx5a;Stx5a;Stx5a;Stx5a;Wdr74;Wdr74;Wdr74;Wdr74;Wdr74;Wdr74;Wdr74;Wdr74,1589;1545;0;0;0;0;0;0;0;0;0;0;0;0;-504;0;0;0;6426;0;0;0;2639,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,56389,ENSMUSG00000010110,conserved gene and region,19,8742266,8742308,43,*,43,7,0.558139535,2.104895105,0.162790698,0.000000419,CpGisland,TRUE,U1,Pr-A
18711,cg22225812,0.00000994,0.0000136,0.728669498,0.466753955,gain,ns,0.00007,0.0000232,3.018604817,0.002750218,pos,ns,0.018987819,0.006791587,2.795785515,0.00550045,pos,ns,2.259601743,-0.000450615,0.000233562,-1.929313688,0.054604434,neg,ns,0.583740533,Dscam,Dscam_Exon,16,96820725,96820774,96820773,96820774,50,-,AGCTGATTTGACAAGCACCTCTTACGTTTATTCGAGCCTGGTACAGGACG,"Exon (Dscam-201/Dscam, exon 7 of 33)",16,96590840,97170752,579913,2,Dscam-201,349978,Dscam-201,Dscam,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,12,13508,ENSMUSG00000050272,conserved gene and region,16,96820653,96821038,386,*,386,20,0.567357513,0.644514944,0.051813472,4.30E-10,CpGisland,TRUE,NA,NRS
6678,cg14425465,0.0000166,0.00000514,3.235443192,0.001345759,gain,ns,-0.0000263,0.00000873,-3.017789305,0.002757414,neg,ns,0.018083295,0.002557815,7.069822684,1.03E-11,pos,yes,10.98613534,-0.000250202,0.000088,-2.844402671,0.004745379,neg,ns,0.915591997,Uri1,Uri1_Intron,7,37995945,37995994,37995993,37995994,50,-,TGCAGACAATAATCAAGACAGCTCCTGTTGTTCTCTCAGTAAAACCTTCG,"Intron (Uri1-201/Uri1, intron 2 of 10)",7,37959992,38019542,59551,2,Uri1-201,23548,Uri1-201;Uri1-206;Uri1-207;Uri1-205,Uri1;Uri1;Uri1;Uri1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,27,19777,ENSMUSG00000030421,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9896,cg22371751,-0.000000958,0.0000045,-0.21268621,0.831711511,loss,ns,0.0000231,0.00000765,3.01717976,0.002762805,pos,ns,0.006904329,0.00224129,3.080516468,0.002251609,pos,ns,2.647507018,-0.000223956,0.0000771,-2.905584379,0.003929491,neg,ns,0.901289414,Naa15,Naa15_Exon,3,51443861,51443910,51443861,51443862,50,+,CGGGAAGCAGGTCTCTATAGAGAAGCTTTGGAACATCTTTGTACCTATGA,"Exon (Naa15-205/Naa15, exon 6 of 20)",3,51415148,51476507,61360,1,Naa15-205,28713,Naa15-205;Naa15-201;Naa15-204;Naa15-203;Naa15-209;Naa15-202,Naa15;Naa15;Naa15;Naa15;Naa15;Naa15,0;0;0;27247;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,5,74838,ENSMUSG00000063273,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15658,cg21322241,0.0000107,0.00000799,1.334535109,0.183007927,gain,ns,0.000041,0.0000136,3.017172031,0.002762873,pos,ns,0.011618688,0.0039775,2.921103417,0.00374399,pos,ns,2.42666537,-0.000352748,0.000136786,-2.578831509,0.010374367,neg,ns,0.83674397,Mbp,Mbp_Exon,18,82554651,82554700,82554699,82554700,50,-,GCATGGCTTCCTCCCAAGGCACAGAGACACGGGCATCCTTGACTCCATCG,"Exon (Mbp-205/Mbp, exon 4 of 4)",18,82475146,82558703,83558,1,Mbp-205,79505,Mbp-205;Mbp-201;Mbp-213;Mbp-215;Mbp-212;Mbp-204;Mbp-211;Mbp-209;Mbp-216;Mbp-202;Mbp-203;Mbp-206;Mbp-207;Mbp-210,Mbp;Mbp;Mbp;Mbp;Mbp;Mbp;Mbp;Mbp;Mbp;Mbp;Mbp;Mbp;Mbp;Mbp,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,17196,ENSMUSG00000041607,conserved gene and region,18,82554680,82554790,111,*,111,9,0.621621622,0.870209059,0.081081081,0.00000221,CpGisland,TRUE,U11,Tr-P
19590,cg23292987,0.0000365,0.0000123,2.97613233,0.003148856,gain,ns,0.0000628,0.0000208,3.016514514,0.002768699,pos,ns,0.01567134,0.006103796,2.567474421,0.010712947,pos,ns,1.970091024,-0.000119179,0.000209909,-0.567765423,0.570605227,neg,ns,0.238398603,Eda,Eda_Intron,X,99976780,99976829,99976780,99976781,50,+,CGCCCCTGAGGAATTCTGGTAGAAATATGCCGTCTTGCTAGACAACTTCT,"Intron (Eda-211/Eda, intron 1 of 1)",20,99975606,100311299,335694,1,Eda-211,1174,Eda-211;Eda-208;Eda-209;Eda-202;Eda-203;Eda-206;Eda-205;Eda-207;Eda-204;Eda-201,Eda;Eda;Eda;Eda;Eda;Eda;Eda;Eda;Eda;Eda,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,9,13607,ENSMUSG00000059327,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
18762,cg04399564,0.0000433,0.00000511,8.457787376,1.09E-15,gain,yes,-0.0000262,0.00000869,-3.016292346,0.00277067,neg,ns,-0.007582511,0.002545381,-2.978929789,0.003121054,neg,ns,2.505698739,0.000182929,0.0000875,2.089773408,0.037452921,pos,ns,0.825753773,Bcl9,Bcl9_Exon,3,97215118,97215167,97215166,97215167,50,+,TGTCAGAGTCATCGTTTGGAGTCCCAGGATCTCTCTGATCAAAGGAGTCG,"Exon (Bcl9-201/Bcl9, exon 5 of 10)",3,97203662,97227364,23703,2,Bcl9-201,12197,Bcl9-201;Bcl9-207;Bcl9-203;Bcl9-206;Bcl9-204;Bcl9-205;Bcl9-208,Bcl9;Bcl9;Bcl9;Bcl9;Bcl9;Bcl9;Bcl9,0;0;-1109;0;13679;12368;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,10,77578,ENSMUSG00000038256,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14310,cg24405683,0.0000499,0.0000068,7.342369813,1.86E-12,gain,yes,-0.0000349,0.0000116,-3.016217085,0.002771338,neg,ns,0.006787732,0.003385236,2.005098586,0.045821559,pos,ns,1.338930134,-0.000445142,0.000116418,-3.823654968,0.00015895,neg,ns,0.616165433,Myo5a,Myo5a_threeUTR,9,75146961,75147010,75147009,75147010,50,+,ACAGAGACATACATCAAGCCCATCTCCAAGCTGCAGGCCACAAATGCCCG,3' UTR,9,75071188,75223688,152501,1,Myo5a-201,75773,Myo5a-201;Myo5a-214;Myo5a-202;Myo5a-206;Myo5a-208,Myo5a;Myo5a;Myo5a;Myo5a;Myo5a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,3,17918,ENSMUSG00000034593,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4688,cg26589958,-0.0000172,0.0000068,-2.533990999,0.011769346,loss,ns,0.0000348,0.0000115,3.016212143,0.002771382,pos,ns,-0.000966898,0.003383739,-0.285748406,0.775261668,neg,ns,0.110551689,0.000203241,0.000116366,1.74656319,0.081703577,pos,ns,0.638768571,Mecom,Mecom_Intron,3,30106714,30106763,30106714,30106715,50,+,CGTCTATCATACTGATTGACGAAACCAAGAGTGAGCAGAAAAAATAAACA,"Intron (Mecom-212/Mecom, intron 1 of 15)",3,29951299,30509733,558435,2,Mecom-212,402970,Mecom-212;Mecom-203;Mecom-210;Mecom-213;Mecom-207;Mecom-208;Mecom-211,Mecom;Mecom;Mecom;Mecom;Mecom;Mecom;Mecom,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,80,14013,ENSMUSG00000027684,conserved gene and region,3,30106598,30106734,137,*,137,14,0.613138686,1.097254005,0.102189781,3.95E-11,CpGisland,TRUE,U9,En-Pp
20602,cg01387835,0.0000473,0.00000544,8.70642666,1.90E-16,gain,yes,-0.0000279,0.00000924,-3.016032351,0.002772978,neg,ns,-0.005254635,0.002706209,-1.941695729,0.053079732,neg,ns,1.275071278,-0.0000843,0.0000931,-0.906325809,0.36546734,neg,ns,0.855475074,Nsf,Nsf_Intron,11,103840937,103840986,103840937,103840938,50,+,CGGACATTTCCTAACACTGGACAAATTGTACGTCCAGCTCAGGGAGGGTG,"Intron (Nsf-202/Nsf, intron 17 of 20)",11,103821782,103954056,132275,2,Nsf-202,113070,Nsf-202,Nsf,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,3,18195,ENSMUSG00000034187,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20217,cg08962452,0.0000579,0.00000594,9.736082797,1.02E-19,gain,yes,-0.0000305,0.0000101,-3.015988014,0.002773372,neg,ns,0.003961957,0.002958664,1.339103594,0.181517991,pos,ns,0.741080324,-0.000102697,0.000101748,-1.009320691,0.313608012,neg,ns,0.116131586,Hoxc11,Hoxc11_Promoter,15,102954270,102954319,102954318,102954319,50,-,AATCTGCAATTGATTTTCATAATGTTTCTGCGGTGTTTGCAAACCAATCG,Promoter (<=1kb),15,102954427,102957708,3282,1,Hoxc11-201,-157,Hoxc11-201,Hoxc11,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,12,24,109663,ENSMUSG00000001656,mapped to different genes,15,102954221,102954599,379,*,379,28,0.519788918,1.094020619,0.073878628,6.96E-18,CpGisland,TRUE,U13,Hc-P
20322,cg26035702,0.0000903,0.00000568,15.91819131,4.11E-42,gain,yes,-0.0000291,0.00000964,-3.015736206,0.002775609,neg,ns,0.003141307,0.002824834,1.112032663,0.266985752,pos,ns,0.573511915,0.000153275,0.0000971,1.577779013,0.115636243,pos,ns,0.183060577,Hoxc5,Hoxc5_Intron,15,102998172,102998221,102998220,102998221,50,-,GTCATGTGGATTCCATCCATGAACGTGAACTTTTTATTGTGGTTTGTCCG,"Intron (Hoxc5-202/Hoxc5, intron 1 of 1)",15,102967443,103015676,48234,1,Hoxc5-202,30729,Hoxc5-202;Hoxc6-202;Hoxc6-203;Hoxc8-201;Hoxc8-202,Hoxc5;Hoxc6;Hoxc6;Hoxc8;Hoxc8,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,46,134,15424,ENSMUSG00000022485,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
13311,cg07964178,0.0000217,0.00000257,8.424985352,1.37E-15,gain,yes,-0.0000132,0.00000437,-3.015594006,0.002776873,neg,ns,-0.002849572,0.001279095,-2.227803222,0.02661103,neg,ns,1.574938313,0.0000924,0.000044,2.099994557,0.036537193,pos,ns,0.055012637,Egr3,Egr3_Promoter,14,70076901,70076950,70076949,70076950,50,+,GAGTTCCCTGGCTGGGAGCTTTTGGGCAGCAGTGAGCTTGCTAGGAAGCG,Promoter (<=1kb),14,70077203,70079955,2753,1,Egr3-201,-253,Egr3-201;Egr3-204;Egr3-203;Egr3-202,Egr3;Egr3;Egr3;Egr3,0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,10,19,13655,ENSMUSG00000033730,conserved gene but different region,14,70076949,70077094,146,*,146,18,0.739726027,1.080592105,0.123287671,8.72E-16,CpGisland,TRUE,U3,Pr-B
15818,cg07894658,-0.0000363,0.00000626,-5.796198609,1.67E-08,loss,yes,0.0000321,0.0000106,3.012834404,0.002801513,pos,ns,0.002288909,0.003116807,0.73437621,0.46327459,pos,ns,0.33416152,-0.0000104,0.000107187,-0.097030007,0.922765266,neg,ns,0.856692774,Mef2c,Mef2c_Intron,13,83566284,83566333,83566332,83566333,50,+,AGCTCTTACTTTGATGAGGTTCAATTGCAATCATGTTGGAGTCGAGTACG,"Intron (Mef2c-218/Mef2c, intron 2 of 10)",13,83504034,83663343,159310,1,Mef2c-218,62250,Mef2c-218;Mef2c-228;Mef2c-221;Mef2c-229;Mef2c-201;Mef2c-202;Mef2c-207;Mef2c-231;Mef2c-222;Mef2c-223;Mef2c-227;Mef2c-217;Mef2c-213;Mef2c-214;Mef2c-215;Mef2c-226;Mef2c-216,Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,41,17260,ENSMUSG00000005583,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10228,cg10028985,-0.000000904,0.00000221,-0.40911907,0.682734791,loss,ns,0.0000113,0.00000376,3.012459766,0.002804873,pos,ns,0.002733816,0.001100143,2.484963762,0.013483733,pos,ns,1.870189862,-0.0000503,0.0000378,-1.330309511,0.184394126,neg,ns,0.948998971,Alcam,Alcam_threeUTR,16,52250598,52250647,52250646,52250647,50,-,ATCTCAAGGTGCATTCAATATCTGTAGGGTAGTTAACAAAAACACACACG,3' UTR,16,52248996,52454074,205079,2,Alcam-201,203427,Alcam-201;Alcam-205;Alcam-207;Alcam-202;Alcam-204,Alcam;Alcam;Alcam;Alcam;Alcam,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,3,11658,ENSMUSG00000022636,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10485,cg26854008,0.0000223,0.00000736,3.028735986,0.002662239,gain,ns,0.0000377,0.0000125,3.011702907,0.002811674,pos,ns,-0.000835396,0.003664833,-0.227949243,0.819835976,neg,ns,0.086273028,0.000161168,0.000126033,1.27876916,0.201934825,pos,ns,0.758144501,Npas3,Npas3_Intron,12,53837647,53837696,53837647,53837648,50,-,CGGCAGGATCCTTGGGGGAAAAAGTTCCTCTGTTCGATCCAGATATTGAA,"Intron (Npas3-204/Npas3, intron 4 of 10)",12,53248157,54069532,821376,1,Npas3-204,589490,Npas3-204;Npas3-201;Npas3-203,Npas3;Npas3;Npas3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,83,103,27386,ENSMUSG00000021010,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13308,cg13673047,0.0000557,0.00000635,8.766064309,1.24E-16,gain,yes,-0.0000325,0.0000108,-3.011600289,0.002812597,neg,ns,-0.008370498,0.003160326,-2.648618381,0.00849599,neg,ns,2.070786005,0.000361725,0.000108683,3.32824825,0.000979232,pos,ns,0.154630551,Egr3,Egr3_Promoter,14,70076860,70076909,70076860,70076861,50,-,CGTCACGGAGCTTTCCCGGGGCTCAGATAAATAGGCTGGTGGAGTTCCCT,Promoter (<=1kb),14,70077203,70079955,2753,1,Egr3-201,-343,Egr3-201;Egr3-204;Egr3-203;Egr3-202,Egr3;Egr3;Egr3;Egr3,0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,10,19,13655,ENSMUSG00000033730,conserved gene and region,14,70076812,70076877,66,*,66,7,0.621212121,1.105263158,0.106060606,0.00000889,CpGisland,TRUE,U3,Pr-B
12079,cg10578662,-0.00000252,0.00000204,-1.234215097,0.21805757,loss,ns,-0.0000104,0.00000346,-3.011510927,0.002813401,neg,ns,-0.001405829,0.001015005,-1.385046822,0.167034041,neg,ns,0.777195012,0.0000184,0.0000349,0.526214691,0.599115308,pos,ns,0.947280756,Ccar1,Ccar1_Exon,10,62764314,62764363,62764314,62764315,50,+,CGTTCAGTGCCTGTTCTCCATCAGCCTCCTTGCGTTCACCCTGAAGCTTC,"Exon (Ccar1-201/Ccar1, exon 14 of 25)",10,62743928,62792231,48304,2,Ccar1-201,27868,Ccar1-201;Ccar1-211;Ccar1-207;Ccar1-206;Ccar1-212;Ccar1-205;Ccar1-210;Gm48145-201,Ccar1;Ccar1;Ccar1;Ccar1;Ccar1;Ccar1;Ccar1;Gm48145,0;0;-847;0;-3965;0;0;2563,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,10,67500,ENSMUSG00000020074,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14846,cg07785210,0.00000079,0.00000265,0.297957526,0.765935175,gain,ns,-0.0000136,0.0000045,-3.011259664,0.002815663,neg,ns,-0.004117686,0.001319397,-3.120885172,0.001972846,neg,ns,2.704906846,0.000106852,0.0000454,2.354928742,0.019149367,pos,ns,0.733539857,Eif3d,Eif3d_Exon,15,77959592,77959641,77959592,77959593,50,+,CGGATGACCTGCTTGTTGGGGTCCTTGAGGATGAGGTATTTGCCCTCCTC,"Exon (Eif3d-201/Eif3d, exon 14 of 15)",15,77958998,77970813,11816,2,Eif3d-201,11172,Eif3d-201;Eif3d-206;Eif3d-208;Eif3d-204;Foxred2-201;Foxred2-202;Foxred2-203,Eif3d;Eif3d;Eif3d;Eif3d;Foxred2;Foxred2;Foxred2,0;0;4131;4537;-2870;-2917;-2909,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,55944,ENSMUSG00000016554,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9439,cg00159476,0.000000607,0.0000131,0.046453778,0.962978485,gain,ns,0.0000669,0.0000222,3.010000641,0.002827023,pos,ns,-0.00611553,0.006508202,-0.939665084,0.348120966,neg,ns,0.45826982,0.000425316,0.000223817,1.900289372,0.05832276,pos,ns,0.744322972,Gm48909,Gm48909_Intron,14,48738565,48738614,48738565,48738566,50,-,CGGGAATGGACACAGTGGGGAGAATTGGATCACCAGATTAGGTCTTTAGG,"Intron (Otx2os1-206/Otx2os1-206, intron 2 of 4)",14,48695601,48695981,381,2,Gm48909-201,-42633,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,8,105245868,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3072,cg02093669,-0.00000576,0.00000666,-0.864710497,0.38786633,loss,ns,0.0000341,0.0000113,3.009973503,0.002827269,pos,ns,0.010892258,0.003314348,3.286395118,0.001131214,pos,ns,2.946455189,-0.000368276,0.00011398,-3.231057553,0.001365888,neg,ns,0.859856645,Lrmda,Lrmda_Intron,14,22539703,22539752,22539751,22539752,50,-,TATTTTCTTTGTCTGATTATACATGATAAACACACATTAGTGACATTTCG,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,519991,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206;Lrmda-202,Lrmda;Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8960,cg18980854,-0.000000512,0.00000242,-0.211694918,0.832484162,loss,ns,0.0000124,0.00000411,3.009939946,0.002827572,pos,ns,0.002669312,0.0012045,2.216117255,0.027409395,pos,ns,1.562100557,-0.0000723,0.0000414,-1.746506039,0.081713516,neg,ns,0.97373669,Kcnc1,Kcnc1_Exon,7,46435191,46435240,46435191,46435192,50,-,CGCTGGCGAACGAAGACTGCCCCCACATAGACCAGGCCCTCACTCCCGAT,"Exon (Kcnc1-203/Kcnc1, exon 3 of 4)",7,46397648,46438704,41057,1,Kcnc1-203,37543,Kcnc1-201;Kcnc1-203,Kcnc1;Kcnc1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,14,16502,ENSMUSG00000058975,conserved gene but different region,7,46435182,46435318,137,*,137,14,0.656934307,0.970647773,0.102189781,3.95E-11,CpGisland,TRUE,U15,NS
12564,cg20916989,0.0000543,0.00000932,5.83006786,1.39E-08,gain,yes,-0.0000476,0.0000158,-3.009628162,0.002830392,neg,ns,0.018797384,0.004637631,4.053229973,0.0000639,pos,ns,4.194279991,-0.000381861,0.000159488,-2.394294902,0.017246176,neg,ns,0.853386159,Pappa,Pappa_Exon,4,65297383,65297432,65297383,65297384,50,+,CGTTCCTTCGACAACTTTGACCCCGTCACCCTGAGCAGCTGCCAGAGAGG,"Exon (Pappa-201/Pappa, exon 13 of 22)",4,65124174,65357509,233336,1,Pappa-201,173209,Pappa-201,Pappa,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,5,18491,ENSMUSG00000028370,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3539,cg01698540,-0.00000135,0.0000102,-0.133236029,0.894093165,loss,ns,0.0000519,0.0000172,3.009058435,0.002835553,pos,ns,0.001499274,0.005051799,0.296780232,0.766833045,pos,ns,0.11529918,0.0000905,0.000173731,0.521108322,0.602663356,pos,ns,0.839002321,Gm12067,Gm12067_Intron,11,24448125,24448174,24448173,24448174,50,+,GCCAGCTGCCAGTAGGCATTTTCTCTCTGATAGCGCTAACCACTTAACCG,"Intron (Gm12068-201/Gm12068-201, intron 1 of 3)",11,24552438,24553962,1525,2,Gm12067-201,105788,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,58,100417843,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24487,cg15845854,-0.0000167,0.0000078,-2.144480951,0.032771571,loss,ns,0.0000399,0.0000132,3.00890107,0.002836979,pos,ns,0.01443452,0.003881594,3.71870951,0.000237611,pos,ns,3.624133691,-0.000469307,0.000133488,-3.515732255,0.000503989,neg,ns,0.843956346,Gm47965,Gm47965_Intergenic_upstream,10,126615863,126615912,126615911,126615912,50,-,TTTTTATGAGTTGTTTGTCACCATATACCAGTCTTGTTAAGAAGCAATCG,Distal Intergenic,10,126586690,126586804,115,2,Gm47965-201,-29108,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17970,cg07869104,-0.0000627,0.0000117,-5.349705412,0.000000172,loss,yes,0.0000599,0.0000199,3.008677869,0.002839004,pos,ns,0.033462356,0.005835678,5.734099536,2.33E-08,pos,ns,7.633196661,-0.000970403,0.000200688,-4.835369892,0.0000021,neg,ns,0.828239829,Pcdh9,Pcdh9_threeUTR,14,93013748,93013797,93013748,93013749,50,+,CGTAGAACTGGCAAAGCAGTAACAAGGATAATTGTTTAGATATTTATTCT,3' UTR,14,93013410,93890669,877260,2,Pcdh9-208,876872,Pcdh9-208;Pcdh9-204;Pcdh9-202;Pcdh9-207;Pcdh9-201,Pcdh9;Pcdh9;Pcdh9;Pcdh9;Pcdh9,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,10,211712,ENSMUSG00000055421,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
677,cg09203697,-0.0000103,0.00000358,-2.868432362,0.004408129,loss,ns,-0.0000183,0.00000609,-3.00847828,0.002840816,neg,ns,-0.000895789,0.001782718,-0.50248504,0.615683128,neg,ns,0.210642747,-0.000168001,0.0000613,-2.740304194,0.006494076,neg,ns,0.9224111,Flnb,Flnb_Exon,14,7890728,7890777,7890776,7890777,50,-,AGCCCCTTTGAAGTTCAAGTTGGCCCTGAAGCGGGTATGCAGAAAGTCCG,"Exon (Flnb-201/Flnb, exon 11 of 46)",14,7817957,7951588,133632,1,Flnb-201,72771,Flnb-201;Flnb-202,Flnb;Flnb,0;5987,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,286940,ENSMUSG00000025278,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2950,cg19516550,0.0000618,0.0000113,5.451455969,0.000000102,gain,yes,0.000058,0.0000193,3.008009623,0.002845075,pos,ns,0.018489022,0.005645902,3.27476829,0.001177169,pos,ns,2.92916131,-0.000168424,0.000194162,-0.867441277,0.386371234,neg,ns,0.748812555,Lrmda,Lrmda_Intron,14,22152534,22152583,22152582,22152583,50,+,GTTGTCATTCAGTGGGAGCTGTCAATGTGTCAAGCTGTCAGCCTGCTGCG,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,132822,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206,Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17976,cg16593601,-0.00000856,0.0000132,-0.64655899,0.518395803,loss,ns,0.0000677,0.0000225,3.00790524,0.002846024,pos,ns,0.016409588,0.006590847,2.489753954,0.013306964,pos,ns,1.875921003,-0.000172248,0.000226659,-0.759945086,0.447864954,neg,ns,0.284809689,Arx,Arx_Intergenic_upstream,X,93070394,93070443,93070442,93070443,50,+,AACGGGGGATTAACAGGTATTTGTCTCAGCTAATTTCACTCTCTATACCG,Distal Intergenic,20,93286445,93288382,1938,1,Arx-203,-216002,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,32,11878,ENSMUSG00000035277,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13148,cg11989578,0.00000493,0.00000339,1.453978038,0.146964048,gain,ns,-0.0000173,0.00000576,-3.007081137,0.002853529,neg,ns,-0.002463624,0.001688154,-1.45936037,0.145478496,neg,ns,0.837201199,0.0000111,0.0000581,0.191939778,0.847915044,pos,ns,0.881511876,Wrap53,Wrap53_Exon,11,69563886,69563935,69563934,69563935,50,-,ATCAGAGAATACCAGCAGTAATCATAGATGGTATCACCTTCCACCATTCG,Promoter (<=1kb),11,69561758,69563922,2165,2,Wrap53-203,0,Efnb3-201;Wrap53-203;Wrap53-201,Efnb3;Wrap53;Wrap53,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,216853,ENSMUSG00000041346,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18297,cg19208044,0.0000893,0.0000183,4.865755617,0.00000182,gain,yes,0.0000937,0.0000312,3.006634203,0.002857606,pos,ns,0.022630299,0.009130967,2.478412019,0.013728881,pos,ns,1.862364851,-0.000230919,0.000314013,-0.735379869,0.462664167,neg,ns,0.638233938,Gm48316,Gm48316_Exon,13,94702415,94702464,94702415,94702416,50,+,CGCCACTGAAATTTTATCGAAGTCTAATTTAACTTACATAATGAGTTGAA,"Exon (Gm32351-201/Gm32351-201, exon 1 of 3)",13,94752270,94752593,324,1,Gm48316-201,-49806,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,42,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
8404,cg05934936,0.000022,0.00000971,2.268271811,0.024000241,gain,ns,0.0000496,0.0000165,3.006585331,0.002858052,pos,ns,0.02512199,0.004835072,5.195783788,0.00000037,pos,ns,6.43147116,-0.000454317,0.000166278,-2.732280382,0.006650489,neg,ns,0.385484944,Zeb2,Zeb2_threeUTR,2,45097134,45097183,45097182,45097183,50,+,AAAACCCTGAAACTGATGAACAGTTATGTCAAGTCGATTTTGCACCATCG,3' UTR,2,44983632,45117395,133764,2,Zeb2-212,20212,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219;Zeb2-211,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,10,158,24136,ENSMUSG00000026872,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9938,cg26617413,0.0000422,0.00000575,7.341417332,1.87E-12,gain,yes,0.0000294,0.00000978,3.005878903,0.002864509,pos,ns,0.010182484,0.002864097,3.555216124,0.000436572,pos,ns,3.35994433,-0.000169399,0.0000985,-1.719854498,0.086456942,neg,ns,0.54286491,Hs6st2,Hs6st2_Exon,X,51680139,51680188,51680187,51680188,50,+,TGCAGGAACACGATCAGGTCATCGCCCTTGATGTCGAAGTCTACCTTGCG,"Exon (Hs6st2-201/Hs6st2, exon 2 of 5)",20,51387212,51681703,294492,2,Hs6st2-201,1515,Hs6st2-201;Hs6st2-202;Hs6st2-204;Hs6st2-205;Hs6st2-203,Hs6st2;Hs6st2;Hs6st2;Hs6st2;Hs6st2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,6,50786,ENSMUSG00000062184,conserved gene and region,X,51680149,51680343,195,*,195,20,0.620512821,1.071428571,0.102564103,8.60E-16,CpGisland,TRUE,U3,Pr-B
6418,cg05546219,-0.0000051,0.000017,-0.300009217,0.764371196,loss,ns,0.0000868,0.0000289,3.005852214,0.002864753,pos,ns,0.009814883,0.008459392,1.160235085,0.246845859,pos,ns,0.607574153,-0.000344737,0.000290918,-1.184998922,0.236925507,neg,ns,0.663372774,Gm37013,Gm37013_threeUTR,18,37185046,37185095,37185046,37185047,50,-,CGGTGAGTTGCCCGACAAATTCATTATCCCAGGATCTCCTGCAATCATCT,3' UTR,18,36969916,37833296,863381,1,Gm37013-201,215130,Gm37013-201;Gm37388-201;Gm42416-201;Pcdha1-202;Pcdha1-201;Pcdha11-201;Pcdha11-202;Pcdha11-203;Pcdha11-204;Pcdha12-201;Pcdha2-201;Pcdha2-202;Pcdha3-201;Pcdha4-202;Pcdha4-201;Pcdha5-201;Pcdha6-202;Pcdha6-201;Pcdha6-203;Pcdha7-201;Pcdha8-201;Pcdha9-201;Pcdhac1-201;Pcdhac2-201,Gm37013;Gm37388;Gm42416;Pcdha1;Pcdha1;Pcdha11;Pcdha11;Pcdha11;Pcdha11;Pcdha12;Pcdha2;Pcdha2;Pcdha3;Pcdha4;Pcdha4;Pcdha5;Pcdha6;Pcdha6;Pcdha6;Pcdha7;Pcdha8;Pcdha9;Pcdhac1;Pcdhac2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,14,100384868,ENSMUSG00000103458,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1981,cg24369285,0.000172503,0.0000164,10.4976686,2.94E-22,gain,yes,-0.0000839,0.0000279,-3.005488634,0.002868082,neg,ns,0.080304499,0.008178643,9.818804793,5.44E-20,pos,yes,19.26427436,-0.001533845,0.000281263,-5.453421549,0.000000101,neg,yes,0.313606076,Cdh2,Cdh2_Exon,18,16774569,16774618,16774617,16774618,50,-,AGGAAATCCAGTCTTGCATAATGCGATTTCACCAGAAGCCTCTACAGACG,"Exon (Cdh2-201/Cdh2, exon 2 of 16)",18,16588877,16809246,220370,2,Cdh2-201,34628,Cdh2-201;Cdh2-203,Cdh2;Cdh2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,12558,ENSMUSG00000024304,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18398,cg05884078,-0.00000787,0.00000664,-1.185935652,0.236555894,loss,ns,0.0000339,0.0000113,3.005328321,0.002869551,pos,ns,0.003304991,0.003304685,1.000092624,0.318045678,pos,ns,0.497510501,-0.0000043,0.000113648,-0.037813179,0.969860975,neg,ns,0.918866152,Arhgef9,Arhgef9_Exon,X,95130874,95130923,95130874,95130875,50,-,CGATCTGGCCCCACCACCAATCCTTGTTGGAAGCATCCAAGACTTTGATG,"Exon (Arhgef9-202/Arhgef9, exon 2 of 10)",20,95048935,95166361,117427,2,Arhgef9-202,35438,Arhgef9-202;Arhgef9-217;Arhgef9-205;Arhgef9-207;Arhgef9-210;Arhgef9-203;Arhgef9-209;Arhgef9-206;Arhgef9-208;Arhgef9-204;Arhgef9-216;Arhgef9-219;Arhgef9-201;Arhgef9-218;Arhgef9-220;Arhgef9-213;Arhgef9-214,Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,14,236915,ENSMUSG00000025656,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19636,cg01789783,-0.00000326,0.00000326,-1.000414747,0.317890081,loss,ns,-0.0000166,0.00000553,-3.005308787,0.00286973,neg,ns,-0.002902025,0.001621374,-1.789855836,0.074453003,neg,ns,1.128117779,0.0000468,0.0000558,0.838980443,0.402126767,pos,ns,0.934389504,Gm28267,Gm28267_Intergenic_upstream,9,100210931,100210980,100210931,100210932,50,-,CGGGCTGGAAAAATTGCTTATTGACATCAAAATACAGTGCCCTCAACCTG,Distal Intergenic,9,100404495,100404759,265,1,Gm28267-201,-193564,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,29,29,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18523,cg23394448,0.0000127,0.00000401,3.166563541,0.001696001,gain,ns,-0.0000205,0.00000681,-3.004656297,0.002875716,neg,ns,-0.002069276,0.001995435,-1.037004892,0.300541784,neg,ns,0.52209514,0.0000328,0.0000686,0.478235108,0.632819956,pos,ns,0.102918936,Hoxb9,Hoxb9_Exon,11,96271547,96271596,96271595,96271596,50,-,CATTTCTGGGACGCTTAGCAGCTATTATGTCGACTCGATCATAAGTCACG,Promoter (<=1kb),11,96271457,96276595,5139,1,Hoxb9-201,90,Hoxb9-201;Hoxb9-202,Hoxb9;Hoxb9,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,22,15417,ENSMUSG00000020875,mapped to different genes,11,96271433,96272051,619,*,619,70,0.675282714,0.992327951,0.113085622,2.33E-57,CpGisland,TRUE,NA,NRS
20367,cg03668274,0.000131495,0.0000144,9.108616229,1.06E-17,gain,yes,-0.0000737,0.0000245,-3.00373409,0.002884195,neg,ns,-0.023197782,0.007185113,-3.228589703,0.001377337,neg,ns,2.86095974,0.000513628,0.000247095,2.078663713,0.038470446,pos,ns,0.556992145,Hoxc5,Hoxc5_fiveUTR,15,103014078,103014127,103014078,103014079,50,-,CGCCATGAGCTCCTACGTAGCCAATTCATTCTATAAGCAGAGCCCCAATA,5' UTR,15,102967443,103015676,48234,1,Hoxc5-202,46635,Hoxc4-202;Hoxc5-202;Hoxc5-201;Hoxc6-202;Hoxc6-203;Hoxc6-201,Hoxc4;Hoxc5;Hoxc5;Hoxc6;Hoxc6;Hoxc6,0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,13,134,15424,ENSMUSG00000022485,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
27510,cg09009057,0.0000281,0.0000132,2.137136027,0.033369266,gain,ns,0.0000672,0.0000224,3.003640672,0.002885056,pos,ns,0.011387429,0.006554519,1.737340295,0.083320309,pos,ns,1.079249126,0.000127182,0.000225409,0.564226834,0.573007752,pos,ns,0.721290087,Pbx1,Pbx1_Intergenic_upstream,1,168677008,168677057,168677008,168677009,50,+,CGATGACAGATTGAGAAGAACTGTCCCCCTCTCGACAGGCGGGCTTCATT,Distal Intergenic,1,168119364,168432270,312907,2,Pbx1-208,-244738,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,17,84,18514,ENSMUSG00000052534,conserved gene and region,1,168676888,168677048,161,*,161,10,0.527950311,0.897435897,0.062111801,0.00000521,CpGisland,TRUE,U15,NS
16038,cg19770145,-0.00000128,0.00000678,-0.189108728,0.850131351,loss,ns,0.0000346,0.0000115,3.003622986,0.002885219,pos,ns,0.002036374,0.003376608,0.603082774,0.546894585,pos,ns,0.262096377,-0.00000208,0.000116121,-0.01787733,0.985748215,neg,ns,0.700201784,Bnc2,Bnc2_Intron,4,84278868,84278917,84278916,84278917,50,+,TGTAATCTAATTAGACGATGTACCAGCCCTCAATATCTGTCAACCAAACG,"Intron (Bnc2-201/Bnc2, intron 7 of 7)",4,84275095,84675034,399940,2,Bnc2-201,396117,Bnc2-201;Bnc2-202;Bnc2-214;Bnc2-218;Bnc2-215;Bnc2-222;Bnc2-216;Bnc2-213;Bnc2-219,Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,91,242509,ENSMUSG00000028487,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1719,cg24862683,0.0000311,0.0000291,1.067531474,0.286562536,gain,ns,-0.000148511,0.0000494,-3.003603045,0.002885402,neg,ns,-0.00954351,0.014485452,-0.658834091,0.510491362,neg,ns,0.292011602,-0.000420295,0.000498154,-0.843706314,0.399484103,neg,ns,0.402581648,Tle4,Tle4_Intergenic_upstream,19,14777455,14777504,14777503,14777504,50,+,GATTGATGACAGAATAATTTACGCTTGTTTCTCAGTTTCCAGCTGGCACG,Distal Intergenic,19,14448150,14598051,149902,2,Tle4-202,-179404,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,29,21888,ENSMUSG00000024642,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24476,cg00472898,0.0000121,0.00000462,2.619164484,0.009247945,gain,ns,-0.0000236,0.00000785,-3.003372181,0.002887529,neg,ns,-0.005266325,0.002299441,-2.290262948,0.022677362,neg,ns,1.644407458,0.000119394,0.0000791,1.509830598,0.132105217,pos,ns,0.794017801,Atxn2l,Atxn2l_threeUTR,7,126492578,126492627,126492578,126492579,50,-,CGGCGACTGTGGCTTCTGCCCACCCTACATACTTCACAGACAGGTGCAGG,3' UTR,7,126491708,126503437,11730,2,Atxn2l-201,10810,Atxn2l-201;Atxn2l-203;Atxn2l-206;Atxn2l-205;Atxn2l-202;Tufm-201;Tufm-202;Tufm-203;Tufm-204;Tufm-205;Tufm-206,Atxn2l;Atxn2l;Atxn2l;Atxn2l;Atxn2l;Tufm;Tufm;Tufm;Tufm;Tufm;Tufm,0;0;0;0;0;5217;5200;4949;3964;3892;3207,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,8,13,233871,ENSMUSG00000032637,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15040,cg23698415,0.00000398,0.00000282,1.41156986,0.159079545,gain,ns,-0.0000144,0.0000048,-3.00279533,0.002892851,neg,ns,-0.000717089,0.001405065,-0.510359802,0.610162615,neg,ns,0.214554406,-0.0000894,0.0000483,-1.8493635,0.06535712,neg,ns,0.948355819,Nlk,Nlk_Exon,11,78589306,78589355,78589354,78589355,50,-,TTTAGAACACAGTTGCTGTTCACAAGGAGATTCCCTGGCTTAATGTCTCG,"Exon (Nlk-201/Nlk, exon 5 of 11)",11,78567168,78697373,130206,2,Nlk-201,108018,Gm11196-201;Nlk-201,Gm11196;Nlk,-3751;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,6,18099,ENSMUSG00000017376,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6237,cg05250259,0.00000273,0.000013,0.210616687,0.833324762,gain,ns,0.0000662,0.000022,3.002559275,0.002895031,pos,ns,-0.002754515,0.006459215,-0.426447263,0.670077943,neg,ns,0.173874678,0.000491971,0.000222132,2.214769559,0.027502789,pos,ns,0.900748301,Tbc1d14,Tbc1d14_Exon,5,36507602,36507651,36507602,36507603,50,-,CGCCATTTGACAGGGTTTATTCAGAAGGTTAGAAAAGGCAATAAAGGCAT,"Exon (Tbc1d14-215/Tbc1d14, exon 11 of 14)",5,36490604,36574325,83722,2,Tbc1d14-215,66674,Tbc1d14-215;Tbc1d14-205;Tbc1d14-201;Tbc1d14-221;Tbc1d14-203;Tbc1d14-210;Tbc1d14-223;Tbc1d14-202;Tbc1d14-204;Tbc1d14-222;Tbc1d14-219;Tbc1d14-217,Tbc1d14;Tbc1d14;Tbc1d14;Tbc1d14;Tbc1d14;Tbc1d14;Tbc1d14;Tbc1d14;Tbc1d14;Tbc1d14;Tbc1d14;Tbc1d14,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,100855,ENSMUSG00000029192,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15785,cg16323231,0.0000335,0.0000132,2.542675736,0.011486781,gain,ns,0.0000671,0.0000224,3.000309247,0.002915888,pos,ns,0.012309703,0.00655258,1.878604086,0.061236846,pos,ns,1.212987185,-0.000123739,0.000225343,-0.549113005,0.583323203,neg,ns,0.709211455,Rasl10b,Rasl10b_Exon,11,83412660,83412709,83412708,83412709,50,-,TGTGGGCAAGAGTGCCATCGTGCGCCAGTTCTTGTACAACGAGTTCAGCG,"Exon (Rasl10b-201/Rasl10b, exon 2 of 4)",11,83409137,83418834,9698,1,Rasl10b-201,3523,Rasl10b-201;Rasl10b-204;Rasl10b-202;Rasl10b-203,Rasl10b;Rasl10b;Rasl10b;Rasl10b,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,276952,ENSMUSG00000020684,mapped to different genes,11,83412536,83412737,202,*,202,15,0.678217822,0.651612903,0.074257426,7.51E-10,CpGisland,TRUE,NA,NRS
2057,cg26643110,-0.00000681,0.00000334,-2.038876411,0.0423104,loss,ns,-0.000017,0.00000568,-2.998388743,0.002933799,neg,ns,-0.00285036,0.001662733,-1.714262226,0.087480085,neg,ns,1.058090804,0.0000289,0.0000572,0.504543405,0.614238006,pos,ns,0.91417678,Cdk13,Cdk13_Exon,13,17764984,17765033,17765032,17765033,50,-,GTCCGTAAGTACCTTCTCCAATAATTCCGATGATATCAAATTTATCCACG,"Exon (Cdk13-207/Cdk13, exon 4 of 14)",13,17710315,17805097,94783,2,Cdk13-207,40064,Cdk13-207;Cdk13-201;Cdk13-205;Cdk13-206,Cdk13;Cdk13;Cdk13;Cdk13,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,6,69562,ENSMUSG00000041297,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21409,cg09541874,-0.0000133,0.0000102,-1.30844889,0.191690358,loss,ns,-0.0000519,0.0000173,-2.997924764,0.002938141,neg,ns,0.021414268,0.005070612,4.223211359,0.0000317,pos,ns,4.499038384,-0.001355114,0.000174378,-7.771132533,1.15E-13,neg,yes,0.602550861,Sema3f,Sema3f_Intron,9,107706425,107706474,107706473,107706474,50,+,TGTGTTTTTCAAATATTGTCTCCCCAGGCAGGCTGGCTGTTGGGTAAACG,"Intron (Sema3f-201/Sema3f, intron 1 of 17)",9,107681500,107710475,28976,2,Sema3f-201,4001,Sema3f-201;Sema3f-204;Sema3f-208;Sema3f-206,Sema3f;Sema3f;Sema3f;Sema3f,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,6,20350,ENSMUSG00000034684,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
1339,cg13325878,-0.0000113,0.0000158,-0.716697126,0.474100599,loss,ns,0.0000804,0.0000268,2.997221393,0.002944735,pos,ns,0.007584967,0.00786301,0.964639136,0.335477483,pos,ns,0.474336624,0.0000572,0.000270408,0.211672261,0.832501824,pos,ns,0.746457159,Cadps,Cadps_Intron,14,12388826,12388875,12388874,12388875,50,-,AAATCTGCAAGTAGCACACTGATTGTGGCACATTTTATCAAAAAACGGCG,"Intron (Cadps-210/Cadps, intron 27 of 28)",14,12372563,12823053,450491,2,Cadps-210,434178,Cadps-210;Cadps-202;Cadps-203;Cadps-204;Cadps-201;Cadps-212;Cadps-208,Cadps;Cadps;Cadps;Cadps;Cadps;Cadps;Cadps,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,34,27062,ENSMUSG00000054423,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22135,cg21101798,-0.00000588,0.00000356,-1.652818041,0.099380262,loss,ns,-0.0000181,0.00000605,-2.996529708,0.002951233,neg,ns,-0.007005857,0.001771441,-3.954890845,0.0000949,neg,ns,4.022577222,0.000118892,0.0000609,1.951614429,0.051884292,pos,ns,0.936930048,Cdc42bpb,Cdc42bpb_Exon,12,111299149,111299198,111299149,111299150,50,-,CGTACAGTCCCATGTGGCTGAAGCAAAGCAGGTACTCCTCGCTTTCGAGC,"Exon (Cdc42bpb-201/Cdc42bpb, exon 30 of 37)",12,111292976,111377718,84743,2,Cdc42bpb-201,78520,Cdc42bpb-204;Cdc42bpb-201;Cdc42bpb-206;Cdc42bpb-203;Cdc42bpb-207;Cdc42bpb-202,Cdc42bpb;Cdc42bpb;Cdc42bpb;Cdc42bpb;Cdc42bpb;Cdc42bpb,-3833;0;-4548;-2874;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,217866,ENSMUSG00000021279,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4221,cg01511450,-0.00000877,0.0000111,-0.791459715,0.429280923,loss,ns,0.0000564,0.0000188,2.996382931,0.002952614,pos,ns,0.001114981,0.005513971,0.202210222,0.83988502,pos,ns,0.075780165,-0.000244346,0.000189625,-1.28857283,0.198507475,neg,ns,0.371574705,Gm7729,Gm7729_Intron,18,27695547,27695596,27695547,27695548,50,-,CGATTTGTTGGCTGATAAAAAGTGAATAGTAAGTAGCTTGTAATAAAATG,"Intron (Gm49978-202/Gm49978-202, intron 2 of 3)",18,27598644,27599756,1113,1,Gm7729-201,96952,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,22,665646,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12463,cg03972751,-0.00000301,0.00000183,-1.641063254,0.101798426,loss,ns,0.00000933,0.00000311,2.995855907,0.002957575,pos,ns,0.000914812,0.000912469,1.002567485,0.31685151,pos,ns,0.499144219,-0.00000522,0.0000314,-0.166334504,0.868002148,neg,ns,0.952179536,Gm13577,Gm13577_Intergenic_downstream,2,64394961,64395010,64395009,64395010,50,-,AAGTGTCTTCAATTTTCGTGTTGTCTGATGTTGAAGTTAGCTGTCATCCG,Distal Intergenic,2,64474745,64474949,205,2,Gm13577-201,79988,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,17,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5526,cg23928037,-0.00000989,0.00000578,-1.711314738,0.088023284,loss,ns,-0.0000294,0.00000982,-2.995151957,0.002964215,neg,ns,-0.010571547,0.002876072,-3.675689299,0.000279453,neg,ns,3.553690632,0.0000526,0.0000989,0.532225933,0.594950762,pos,ns,0.806060162,Dse,Dse_Exon,10,34183692,34183741,34183740,34183741,50,+,CAACTAGGCTGCGCTGCCATCCTCTCCATGTAGTCTTTGGCCATGTCTCG,"Exon (Dse-201/Dse, exon 2 of 6)",10,34151393,34207715,56323,2,Dse-201,23974,Dse-201;Dse-202;Dse-203,Dse;Dse;Dse,0;0;23336,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,212898,ENSMUSG00000039497,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7920,cg26867175,-0.0000154,0.00001,-1.535400494,0.125705445,loss,ns,0.0000509,0.000017,2.995056559,0.002965116,pos,ns,0.000774316,0.004977949,0.155549232,0.876489581,pos,ns,0.057253242,0.00010706,0.000171191,0.625379803,0.532181911,pos,ns,0.839516534,Hif1an,Hif1an_Intron,19,44632810,44632859,44632858,44632859,50,+,TTTTGAAGAGTCATTAATAATGTGAAAGCTGAAAGCACCCTCCATTTGCG,"Intron (Gm35460-201/Gm35460-201, intron 3 of 6)",19,44562850,44576274,13425,1,Hif1an-201,69960,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,31,319594,ENSMUSG00000036450,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18501,cg12958327,-0.00000319,0.00000179,-1.781880693,0.075747477,loss,ns,0.00000912,0.00000305,2.994547408,0.002969928,pos,ns,0.001732059,0.00089213,1.941485865,0.053105273,pos,ns,1.274862351,-0.0000513,0.0000307,-1.672484171,0.095437776,neg,ns,0.958300854,Cnot6l,Cnot6l_threeUTR,5,96131116,96131165,96131164,96131165,50,-,AGATCCAGGTAAACCAGATTATGAAGCTTGGCAATATCAGGTGGAATGCG,3' UTR,5,96070333,96161990,91658,2,Cnot6l-210,30825,Cnot6l-210;Cnot6l-201;Cnot6l-202;Cnot6l-203;Cnot6l-205;Cnot6l-204;Cnot6l-207;Cnot6l-206;Cnot6l-209,Cnot6l;Cnot6l;Cnot6l;Cnot6l;Cnot6l;Cnot6l;Cnot6l;Cnot6l;Cnot6l,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,11,13,231464,ENSMUSG00000034724,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
802,cg20165101,-0.000000899,0.00000197,-0.456445911,0.648388987,loss,ns,0.00001,0.00000335,2.994108583,0.002974081,pos,ns,0.003843801,0.000980567,3.91997975,0.000109034,pos,ns,3.962438937,-0.0000728,0.0000337,-2.159524461,0.031576105,neg,ns,0.953398718,Chd7,Chd7_Exon,4,8785352,8785401,8785352,8785353,50,+,CGGAGCCCTTTCTAGAGAAACCAGTGCCGGATATGACTCAGGTTAGTGGA,"Exon (Chd7-203/Chd7, exon 3 of 3)",4,8690470,8785591,95122,1,Chd7-203,94882,Chd7-203;Chd7-201;Chd7-202;Chd7-206,Chd7;Chd7;Chd7;Chd7,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,16,320790,ENSMUSG00000041235,conserved gene but different region,4,8785352,8785443,92,*,92,8,0.586956522,1.009602195,0.086956522,0.00000628,CpGisland,TRUE,NA,NRS
4984,cg11682995,-0.0000194,0.00000408,-4.749608232,0.00000312,loss,ns,-0.0000208,0.00000693,-2.993596218,0.002978937,neg,ns,-0.002508166,0.002030989,-1.234947963,0.217785058,neg,ns,0.661971921,0.00011877,0.0000698,1.700472113,0.090045059,pos,ns,0.91721769,U2af1,U2af1_Exon,17,31652518,31652567,31652518,31652519,50,+,CGTCTGTGCACTGTTTTGGGGATTACGATAGATGTTTTGAATCAAGATGG,"Exon (U2af1-202/U2af1, exon 3 of 8)",17,31647081,31658769,11689,2,U2af1-202,6202,U2af1-202;U2af1-201;U2af1-208;U2af1-209;U2af1-206;U2af1-207;U2af1-205;U2af1-203;U2af1-204,U2af1;U2af1;U2af1;U2af1;U2af1;U2af1;U2af1;U2af1;U2af1,0;0;0;0;-3206;0;0;0;6136,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,108121,ENSMUSG00000061613,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20735,cg13788309,0.0000153,0.00000556,2.754925217,0.006217585,gain,ns,-0.0000283,0.00000944,-2.99284394,0.002986079,neg,ns,0.000491263,0.002765606,0.177633191,0.859127069,pos,ns,0.065942597,-0.0000282,0.0000951,-0.296567564,0.766995271,neg,ns,0.747298709,Dicer1,Dicer1_Exon,12,104728417,104728466,104728465,104728466,50,+,TCTGGATCACATTTCCCATTTAAAATGGAAGCAGTTAGTCCCAAAATGCG,"Exon (Dicer1-201/Dicer1, exon 6 of 27)",12,104687742,104751952,64211,2,Dicer1-201,23486,Dicer1-201;Dicer1-202;Dicer1-203,Dicer1;Dicer1;Dicer1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,12,192119,ENSMUSG00000041415,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10802,cg00915004,0.0000119,0.00000263,4.516529021,0.00000895,gain,ns,-0.0000134,0.00000447,-2.990514494,0.003008297,neg,ns,0.004872345,0.001309726,3.720125622,0.000236339,pos,ns,3.626463711,0.0000126,0.000045,0.278714054,0.780650105,pos,ns,0.944154522,Vti1a,Vti1a_Intron,19,55477107,55477156,55477107,55477108,50,-,CGATGGGTTTTAATGAAATCCATTTGACAAATATAATTAAGGTGTTTTAA,"Intron (Vti1a-206/Vti1a, intron 5 of 7)",19,55316295,55577001,260707,1,Vti1a-206,160812,Vti1a-206;Vti1a-202;Vti1a-201,Vti1a;Vti1a;Vti1a,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,32,53611,ENSMUSG00000024983,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16281,cg25467381,0.0000702,0.00000658,10.67229675,7.47E-23,gain,yes,-0.0000334,0.0000112,-2.989824113,0.00301491,neg,ns,-0.005405144,0.003273172,-1.651347176,0.0996803,neg,ns,1.001390664,0.000185284,0.000112564,1.646027982,0.100771414,pos,ns,0.881539676,Nfix,Nfix_threeUTR,8,84713776,84713825,84713824,84713825,50,-,TGTGGGATGTTCAGAAAGTTGCCGTCCCGGGGTCCGATGCTGACAAACCG,3' UTR,8,84704712,84773396,68685,2,Nfix-204,59571,Nfix-204;Nfix-201;Nfix-202;Nfix-203;Nfix-206;Nfix-205,Nfix;Nfix;Nfix;Nfix;Nfix;Nfix,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,49,18032,ENSMUSG00000001911,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25688,cg06393286,0.0000188,0.00000325,5.777498345,1.85E-08,gain,yes,-0.0000165,0.00000553,-2.98875934,0.003025136,neg,ns,-0.0010574,0.001619565,-0.652891307,0.514310241,neg,ns,0.288774828,0.0000346,0.0000557,0.620849743,0.535154688,pos,ns,0.087545742,Fam43b,Fam43b_Exon,4,138395781,138395830,138395829,138395830,50,-,TACCACACGGTGTAGGTCGGGTCCTCCTTGTTGAGCTCCACTTTCTGGCG,Promoter (<=1kb),4,138394092,138396528,2437,2,Fam43b-201,698,Fam43b-201,Fam43b,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,625638,ENSMUSG00000078235,conserved gene and region,4,138395829,138396260,432,*,432,40,0.680555556,0.801001252,0.092592593,2.87E-29,CpGisland,TRUE,U13,Hc-P
601,cg24936113,0.0000518,0.00000967,5.35616628,0.000000166,gain,yes,-0.0000491,0.0000164,-2.988197501,0.003030545,neg,ns,0.047752546,0.004812727,9.922139077,2.48E-20,pos,yes,19.60468236,-0.001222029,0.000165509,-7.383445946,1.43E-12,neg,yes,0.598011058,Pcmtd1,Pcmtd1_threeUTR,1,7155103,7155152,7155103,7155104,50,-,CGTCTAAGAGGGAAGCTACAGGGCAAGGCTAGGTCACCCTGATCTCCTAG,3' UTR,1,7088920,7173628,84709,1,Pcmtd1-201,66183,Pcmtd1-201;Pcmtd1-202;Pcmtd1-203;Pcmtd1-206;Pcmtd1-205;Pcmtd1-204;Pcmtd1-207,Pcmtd1;Pcmtd1;Pcmtd1;Pcmtd1;Pcmtd1;Pcmtd1;Pcmtd1,0;0;0;0;0;0;-4933,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,1,319263,ENSMUSG00000051285,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8687,cg13144031,-0.00000571,0.00000327,-1.747931017,0.081465995,loss,ns,0.0000166,0.00000555,2.985985892,0.003051923,pos,ns,0.001951085,0.001626763,1.199366499,0.231301373,pos,ns,0.63582179,-0.0000336,0.0000559,-0.601043806,0.548250026,neg,ns,0.93319114,Poll,Poll_Intergenic_downstream,19,45549188,45549237,45549188,45549189,50,+,CGGAGGAGGCTAAAAAGATGAATTTCAGCAATAAAATTAAATAAGGACGG,Distal Intergenic,19,45552275,45560531,8257,2,Poll-201,11294,Poll-201,Poll,11294,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,16,56626,ENSMUSG00000025218,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
611,cg16065693,-0.00000451,0.00000147,-3.076643521,0.002280177,loss,ns,0.00000744,0.00000249,2.985371965,0.003057881,pos,ns,0.001402225,0.000730192,1.920349945,0.055730975,pos,ns,1.253903356,-0.0000375,0.0000251,-1.493030938,0.136446128,neg,ns,0.0587688,Rcor2,Rcor2_fiveUTR,19,7268246,7268295,7268246,7268247,50,-,CGCAGCCGGCACTACTTCCCTGCCAGCAGCTTCATTGTGTGCGCGAGGAG,Promoter (<=1kb),19,7268279,7275225,6947,1,Rcor2-201,0,Rcor2-204;Rcor2-201;Rcor2-202;Rcor2-203,Rcor2;Rcor2;Rcor2;Rcor2,0;0;0;-2657,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,3,104383,ENSMUSG00000024968,conserved gene but different region,19,7268106,7269070,965,*,965,115,0.744041451,0.861393132,0.119170985,8.73E-97,CpGisland,TRUE,U2,Pr-W
27296,cg01169686,0.000000291,0.00000618,0.047156432,0.962418916,gain,ns,0.0000313,0.0000105,2.984836288,0.003063089,pos,ns,0.010741442,0.00307598,3.492039133,0.000549005,pos,ns,3.26042406,-0.000357502,0.000105783,-3.379586062,0.000818766,neg,ns,0.880416269,Gorab,Gorab_Intergenic_downstream,1,163378086,163378135,163378086,163378087,50,-,CGGTGCTTTTGACTGACAAGCATATTGTTATGATTATGACTGGACTTCTT,Distal Intergenic,1,163394416,163403611,9196,2,Gorab-202,25525,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,2,98376,ENSMUSG00000040124,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7681,cg03596170,0.0000226,0.00000247,9.142281227,8.28E-18,gain,yes,-0.0000125,0.0000042,-2.984168045,0.003069597,neg,ns,-0.003439916,0.001229784,-2.797171598,0.005477495,neg,ns,2.261417988,0.0000547,0.0000423,1.293727066,0.196722795,pos,ns,0.944840887,Zbtb20,Zbtb20_threeUTR,16,43642412,43642461,43642412,43642413,50,+,CGAAAATAAATTTTACAAGGTTTCTGTTTTGTGTGGAAGAGTAATTGATG,3' UTR,16,42907652,43642602,734951,1,Zbtb20-204,734760,Zbtb20-204,Zbtb20,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,9,98,56490,ENSMUSG00000022708,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4180,cg05553771,-0.00000553,0.00000172,-3.218065622,0.001427167,loss,ns,0.00000871,0.00000292,2.983817365,0.003073018,pos,ns,0.00187077,0.00085557,2.186577688,0.029520669,pos,ns,1.529873802,-0.0000544,0.0000294,-1.847766625,0.065588596,neg,ns,0.955417305,Vldlr,Vldlr_threeUTR,19,27241297,27241346,27241345,27241346,50,+,CAGCCATTGCTGTTGATTGGGTGTACAAGACCATCTACTGGACTGATGCG,3' UTR,19,27216484,27249755,33272,1,Vldlr-204,24813,Vldlr-204;Vldlr-208;Vldlr-202;Vldlr-207;Vldlr-201;Vldlr-206,Vldlr;Vldlr;Vldlr;Vldlr;Vldlr;Vldlr,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,4,22359,ENSMUSG00000024924,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25573,cg20733736,0.00000329,0.00000151,2.179422973,0.030052695,gain,ns,0.00000765,0.00000256,2.983519187,0.003075929,pos,ns,0.002820628,0.000751283,3.754415684,0.000207443,pos,ns,3.68310138,-0.0000193,0.0000258,-0.745839933,0.456329282,neg,ns,0.962205137,Ebf3,Ebf3_Intron,7,137248625,137248674,137248673,137248674,50,+,TGTGCCCTCTCAGCTCTTTTGCATTAATCTGCCTCTGAATAAGCTATTCG,"Intron (Ebf3-204/Ebf3, intron 6 of 15)",7,137193673,137314445,120773,2,Ebf3-204,65771,Ebf3-204;Ebf3-201;Ebf3-202;Ebf3-203;Ebf3-208;Ebf3-205,Ebf3;Ebf3;Ebf3;Ebf3;Ebf3;Ebf3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,62,84,13593,ENSMUSG00000010476,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3497,cg12601967,-0.00000348,0.00000193,-1.807574484,0.071641968,loss,ns,-0.00000977,0.00000328,-2.983017108,0.003080836,neg,ns,-0.000918629,0.000959578,-0.957325761,0.339148844,neg,ns,0.469609659,-0.0000265,0.000033,-0.802261858,0.423016083,neg,ns,0.969735923,Bcl11a,Bcl11a_Exon,11,24172722,24172771,24172722,24172723,50,-,CGTAGTACCCAGAGAGCTCAAGATGTGTGGCAGTTTTCGGATGGAAGCTC,"Exon (Bcl11a-201/Bcl11a, exon 5 of 5)",11,24078056,24173194,95139,1,Bcl11a-201,94666,Bcl11a-201;Bcl11a-203;Bcl11a-202;Bcl11a-204,Bcl11a;Bcl11a;Bcl11a;Bcl11a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,51,98,14025,ENSMUSG00000000861,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25155,cg24834487,-0.000026,0.0000117,-2.223921132,0.02687398,loss,ns,-0.0000592,0.0000199,-2.982407601,0.003086803,neg,ns,0.044398547,0.005819498,7.629274056,2.93E-13,pos,yes,12.53364034,-0.001020204,0.000200132,-5.097653052,0.000000599,neg,yes,0.561671089,Wasf2,Wasf2_fiveUTR,4,133176477,133176526,133176525,133176526,50,+,TCCACCATGCCGTTAGTAACGAGGAACATCGAGCCAAGGCACCTGTGCCG,5' UTR,4,133130505,133199756,69252,1,Wasf2-201,45972,Wasf2-201;Wasf2-206;Wasf2-204;Wasf2-203;Wasf2-202,Wasf2;Wasf2;Wasf2;Wasf2;Wasf2,0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,5,242687,ENSMUSG00000028868,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21513,cg05779772,-0.00000325,0.00000583,-0.557820401,0.577369629,loss,ns,-0.0000295,0.0000099,-2.981610652,0.003094621,neg,ns,0.003666871,0.002901396,1.263829938,0.207240601,pos,ns,0.683525157,-0.000820216,0.0000998,-8.220342448,5.61E-15,neg,yes,0.808693822,Rnf123,Rnf123_threeUTR,9,108056380,108056429,108056380,108056381,50,-,CGATCAAACAGGTTCCTCTCAGCTGTCACCCGGTTCAGCACCTGGTTTAG,3' UTR,9,108051534,108083346,31813,2,Rnf123-207,26917,Amigo3-201;Gmppb-202;Gmppb-203;Gmppb-201;Gmppb-204;Rnf123-207;Rnf123-214;Rnf123-201;Rnf123-218;Rnf123-210;Rnf123-205;Rnf123-203;Rnf123-208;Rnf123-206;Rnf123-202;Rnf123-212;Rnf123-216;Rnf123-209,Amigo3;Gmppb;Gmppb;Gmppb;Gmppb;Rnf123;Rnf123;Rnf123;Rnf123;Rnf123;Rnf123;Rnf123;Rnf123;Rnf123;Rnf123;Rnf123;Rnf123;Rnf123,3221;0;0;0;0;0;0;0;0;0;-4150;0;0;-3681;0;0;3336;5560,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,1,84585,ENSMUSG00000041528,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21045,cg10606240,-0.0000757,0.0000315,-2.401991241,0.016894213,loss,ns,-0.000159575,0.0000535,-2.980643293,0.003104135,neg,ns,0.000442927,0.015684523,0.028239777,0.977489083,pos,ns,0.009888084,-0.000843201,0.000539389,-1.563251446,0.119013696,neg,ns,0.782706283,Dcdc5,Dcdc5_Intron,2,106149933,106149982,106149981,106149982,50,-,TTTCAGTAACTAACTCTGACTCCCACAGTCTGGACAAATGATTGATTTCG,"Intron (Dcdc5-203/Dcdc5, intron 8 of 8)",2,106003336,106157718,154383,1,Dcdc5-203,146597,Dcdc5-203;Dcdc5-202,Dcdc5;Dcdc5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,22,329482,ENSMUSG00000074981,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26669,cg23626362,0.00000376,0.00000599,0.627576152,0.530743623,gain,ns,0.0000303,0.0000102,2.980426601,0.00310627,pos,ns,0.005077776,0.00298219,1.702700754,0.089626456,pos,ns,1.047563774,-0.0000413,0.000102557,-0.402867521,0.687323373,neg,ns,0.86775168,Tpr,Tpr_Exon,1,150424670,150424719,150424670,150424671,50,+,CGACGAGAAAAAGAAATTGCTGAAACTAGGTTTGAGGTGGCTCAGGTTGA,"Exon (Tpr-203/Tpr, exon 28 of 52)",1,150392838,150449815,56978,1,Tpr-203,31832,Tpr-203;Tpr-201;Tpr-208;Tpr-213,Tpr;Tpr;Tpr;Tpr,0;0;-20;-4645,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,108989,ENSMUSG00000006005,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16166,cg24341129,-0.0000178,0.00000557,-3.199417003,0.001519588,loss,ns,0.0000282,0.00000947,2.980224129,0.003108266,pos,ns,0.009503775,0.002774326,3.425616039,0.00069608,pos,ns,3.157340546,-0.00020949,0.0000954,-2.195708119,0.028853566,neg,ns,0.131357563,Bnc2,Bnc2_threeUTR,4,84546240,84546289,84546240,84546241,50,+,CGTTTTGCCATGTCCCCATGAACCCTGGTTCAGCCGTAGTCGTTCTGGTT,3' UTR,4,84275095,84675034,399940,2,Bnc2-201,128745,Bnc2-201;Bnc2-202;Bnc2-214;Bnc2-215;Bnc2-206;Bnc2-211;Bnc2-217;Bnc2-207;Bnc2-203;Bnc2-209;Bnc2-221;Bnc2-204;Bnc2-220;Bnc2-210,Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,91,242509,ENSMUSG00000028487,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
25898,cg20085561,-0.0000864,0.0000133,-6.491886705,3.36E-10,loss,yes,0.0000674,0.0000226,2.979851258,0.003111945,pos,ns,0.044942255,0.006623031,6.785753867,5.87E-11,pos,yes,10.23132207,-0.000748948,0.000227765,-3.288242236,0.001124069,neg,ns,0.234845965,Tsc22d3,Tsc22d3_Exon,X,140543242,140543291,140543242,140543243,50,+,CGTCAGGGGCCATGCAAATGAGTCCTGTACCGGGCTTTGTGGCCCAGTTA,"Exon (Tsc22d3-206/Tsc22d3, exon 2 of 2)",20,140540262,140600659,60398,2,Tsc22d3-203,57368,Tsc22d3-202;Tsc22d3-201;Tsc22d3-205;Tsc22d3-203;Tsc22d3-204;Tsc22d3-206,Tsc22d3;Tsc22d3;Tsc22d3;Tsc22d3;Tsc22d3;Tsc22d3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,4,14605,ENSMUSG00000031431,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8033,cg26540559,-0.0000385,0.0000252,-1.528659625,0.127368547,loss,ns,0.000127472,0.0000428,2.978976737,0.003120589,pos,ns,-0.004266961,0.012536171,-0.340371928,0.733806987,neg,ns,0.134418157,0.001128379,0.000431118,2.617332624,0.009296626,pos,ns,0.302174021,Pax2,Pax2_Intergenic_upstream,19,44699005,44699054,44699005,44699006,50,+,CGCTAATGGAAACACATGGCTGCCGGCTGCGGGCTTGTCAGCTTCCCCCG,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-56991,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
11288,cg20265375,0.00000245,0.00000931,0.262945417,0.79276732,gain,ns,0.0000471,0.0000158,2.978772168,0.003122614,pos,ns,-0.001795239,0.0046326,-0.387522953,0.698635028,neg,ns,0.155749644,-0.000142278,0.000159315,-0.893063137,0.372516108,neg,ns,0.883072852,Gria1,Gria1_Exon,11,57327444,57327493,57327492,57327493,50,+,GTTTTTGTTTGATCCCACAGCAATCCATCAACGAAGCCATACGGACATCG,"Exon (Gria1-201/Gria1, exon 16 of 16)",11,57011810,57330244,318435,1,Gria1-201,315634,Gria1-201;Gria1-202;Gria1-204,Gria1;Gria1;Gria1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,13,14799,ENSMUSG00000020524,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13885,cg06918893,0.0000315,0.0000104,3.035781619,0.002602587,gain,ns,0.0000526,0.0000176,2.978020318,0.003130068,pos,ns,0.007968865,0.005170322,1.541270637,0.12427106,pos,ns,0.905629996,-0.0000152,0.000177807,-0.08572316,0.931741829,neg,ns,0.323938276,Sp9,Sp9_Promoter,2,73268845,73268894,73268845,73268846,50,-,CGGATACATAATTTTAAAAAATCAGTTTCAGTGTATATGAGGTTCTCACC,Promoter (3-4kb),2,73271925,73277471,5547,1,Sp9-201,-3080,Sp9-201;Sp9-202,Sp9;Sp9,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,6,21,381373,ENSMUSG00000068859,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
15631,cg06271247,-0.0000141,0.00000746,-1.887408887,0.060039358,loss,ns,0.0000378,0.0000127,2.977966245,0.003130605,pos,ns,0.009417047,0.003715389,2.53460595,0.011749136,pos,ns,1.929994053,-0.000366041,0.000127772,-2.864801433,0.004457647,neg,ns,0.876523069,Gm49047,Gm49047_Intergenic_upstream,14,82431349,82431398,82431349,82431350,50,-,CGAATGCTCTTGGGCACTATTAAATAGTAATAATGAACTTCACCTAAAGC,Distal Intergenic,14,82128619,82128850,232,2,Gm49047-201,-302548,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2260,cg01239622,0.000036,0.00000432,8.323660287,2.76E-15,gain,yes,-0.0000219,0.00000735,-2.977962416,0.003130643,neg,ns,-0.006010265,0.002151837,-2.793085801,0.005545412,neg,ns,2.256066221,0.0000962,0.000074,1.300125131,0.194523893,pos,ns,0.080271858,Meis1,Meis1_Intergenic_downstream,11,18877422,18877471,18877422,18877423,50,+,CGTTTATAATTCGATAAGTGATTTCAATTTGAAATTGTTAGTAACTAATT,Downstream (2-3kb),11,18880668,19012002,131335,2,Meis1-203,134531,Meis1-206;Meis1-202;Meis1-209;Meis1-201;Meis1-203;Meis1-208;Meis1-207,Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1,0;0;0;0;0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,17,88,17268,ENSMUSG00000020160,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
19177,cg01346827,-0.0000214,0.0000052,-4.121718227,0.0000483,loss,ns,-0.0000263,0.00000884,-2.977728552,0.003132965,neg,ns,0.009823205,0.002589106,3.794052525,0.0001782,pos,ns,3.74909157,-0.00032601,0.000089,-3.661423769,0.000294797,neg,ns,0.870389334,Thra,Thra_Exon,11,98764377,98764426,98764377,98764378,50,+,CGCACTTCTGGCCCAAGCTGCTGATGAAGGTGACTGACCTCCGCATGATC,"Exon (Thra-201/Thra, exon 9 of 10)",11,98741811,98769006,27196,1,Thra-201,22566,Nr1d1-201;Nr1d1-202;Thra-201;Thra-202;Thra-203,Nr1d1;Nr1d1;Thra;Thra;Thra,0;6000;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,13,18,21833,ENSMUSG00000058756,conserved gene and region,11,98764222,98764378,157,*,157,10,0.592356688,0.751196172,0.063694268,0.00000418,CpGisland,TRUE,U10,Tr-S
9240,cg05125455,0.000130897,0.0000111,11.75329448,1.26E-26,gain,yes,-0.0000563,0.0000189,-2.977121025,0.003139004,neg,ns,0.001996354,0.005543036,0.360155224,0.71897631,pos,ns,0.143285419,0.000279565,0.000190625,1.466576297,0.143505024,pos,ns,0.77058477,Cadm1,Cadm1_Exon,9,47829389,47829438,47829389,47829390,50,+,CGACAGAACCAGCAGTTCACGGTTGGTATCACATTACTGTTTATCTACTT,"Exon (Cadm1-204/Cadm1, exon 8 of 10)",9,47530173,47853385,323213,1,Cadm1-204,299216,Cadm1-204;Cadm1-209;Cadm1-206;Cadm1-202;Cadm1-203;Cadm1-211;Cadm1-201,Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,13,77,54725,ENSMUSG00000032076,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17861,cg01260478,0.0000227,0.00000844,2.694354396,0.007436846,gain,ns,-0.0000427,0.0000143,-2.976717001,0.003143027,neg,ns,-0.016119967,0.004201969,-3.836288852,0.000151348,neg,ns,3.820023315,0.000393608,0.000144505,2.723827871,0.006818933,pos,ns,0.882840142,Irx5,Irx5_Exon,8,92172774,92172823,92172822,92172823,50,-,CACCAAAGCGGAGTCACTTTATAGAATCTAAATTCACAAATCAACTGTCG,"Exon (Gm45335-201/Gm45335-201, exon 1 of 2)",8,92357625,92376286,18662,1,Irx5-202,-184851,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,30,54352,ENSMUSG00000031737,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21591,cg05211223,-0.0000192,0.00000542,-3.539100466,0.000462997,loss,ns,0.0000274,0.0000092,2.976676169,0.003143434,pos,ns,0.00453017,0.002696343,1.680116176,0.093942092,pos,ns,1.027139775,-0.0000904,0.0000927,-0.975337983,0.330153103,neg,ns,0.922262638,Zfhx3,Zfhx3_Intron,8,108468134,108468183,108468134,108468135,50,+,CGCTGACATTTTCAAAAATTACTTTGAGGTTTCTTAATTGTCGGCAGCAG,"Intron (Zfhx3-204/Zfhx3, intron 3 of 15)",8,107942644,108961630,1018987,1,Zfhx3-204,525490,Zfhx3-204,Zfhx3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,114,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2938,cg07724254,-0.00000522,0.00000164,-3.183314906,0.001603813,loss,ns,0.00000828,0.00000278,2.976343059,0.003146754,pos,ns,0.002403909,0.000815379,2.948212384,0.003439034,pos,ns,2.46356348,-0.0000682,0.000028,-2.43196315,0.015583206,neg,ns,0.958399832,Ehbp1,Ehbp1_Intron,11,22079063,22079112,22079063,22079064,50,+,CGGACCTGGATCAATGCACACATGCCACGATCAATGCATTTGATAAAGAA,"Intron (Ehbp1-201/Ehbp1, intron 14 of 23)",11,22005828,22285838,280011,2,Ehbp1-201,206726,Ehbp1-201;Ehbp1-202;Ehbp1-207,Ehbp1;Ehbp1;Ehbp1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,34,45,216565,ENSMUSG00000042302,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23422,cg12367300,-0.00000981,0.00000677,-1.448362973,0.14852623,loss,ns,0.0000342,0.0000115,2.975327934,0.003156893,pos,ns,0.00805512,0.00336949,2.390604733,0.017417213,pos,ns,1.759021349,-0.000203821,0.000115876,-1.758953878,0.079571897,neg,ns,0.903485074,Gm5672,Gm5672_Intergenic_downstream,14,118363337,118363386,118363337,118363338,50,+,CGGATTGCAAATAAGGTTTGATCACATTCCAGCTTAATCTACTCTCTGAG,Distal Intergenic,14,118375261,118376194,934,2,Gm5672-201,12808,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,9,435422,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27110,cg12343411,-0.000016,0.0000118,-1.350936643,0.177700919,loss,ns,0.0000597,0.0000201,2.975239167,0.003157781,pos,ns,0.020310206,0.005879234,3.45456687,0.000627951,pos,ns,3.20207436,-0.000448137,0.000202186,-2.216454492,0.027386067,neg,ns,0.856603904,Ralgapb,Ralgapb_Exon,2,158430436,158430485,158430484,158430485,50,+,CAGATTCGACTATGCTTACAGGTCCTGAGAGCCATTCAGAAACTGGCCCG,"Exon (Ralgapb-203/Ralgapb, exon 4 of 30)",2,158409848,158499253,89406,1,Ralgapb-203,20588,Ralgapb-203;Ralgapb-201;Ralgapb-207;Ralgapb-205;Ralgapb-209;Ralgapb-202,Ralgapb;Ralgapb;Ralgapb;Ralgapb;Ralgapb;Ralgapb,0;0;20560;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,6,228850,ENSMUSG00000027652,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22206,cg16478519,-0.00000847,0.0000046,-1.840353365,0.066672103,loss,ns,0.0000233,0.00000782,2.975130435,0.003158869,pos,ns,0.005195788,0.002290602,2.268306979,0.023998072,pos,ns,1.619823641,-0.000268106,0.0000788,-3.403502177,0.000752706,neg,ns,0.915889963,Spata6,Spata6_Exon,4,111779219,111779268,111779219,111779220,50,-,CGGCTGGCCCATTTAAATCTGGGACCCTATGAGTTCAAAAAAGAAACAGA,"Exon (Spata6-201/Spata6, exon 7 of 13)",4,111719984,111829142,109159,1,Spata6-201,59235,Spata6-201;Spata6-204;Spata6-213;Spata6-214;Spata6-208;Spata6-205;Spata6-203;Spata6-212;Spata6-211;Spata6-206,Spata6;Spata6;Spata6;Spata6;Spata6;Spata6;Spata6;Spata6;Spata6;Spata6,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,Exon,4,5,67946,ENSMUSG00000034401,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13303,cg02049318,0.0000792,0.00000686,11.55463052,6.38E-26,gain,yes,-0.0000347,0.0000116,-2.97486972,0.003161479,neg,ns,-0.006241134,0.003413018,-1.828626148,0.068416346,neg,ns,1.164840124,0.000322682,0.000117373,2.749190827,0.00632473,pos,ns,0.162900937,Egr3,Egr3_Promoter,14,70076766,70076815,70076766,70076767,50,+,CGCTTCCTGCTTTCTAATGTTCCATTGTGAGGAGCTTCCATTGTGACGTC,Promoter (<=1kb),14,70077203,70079955,2753,1,Egr3-201,-388,Egr3-201;Egr3-204;Egr3-203;Egr3-202,Egr3;Egr3;Egr3;Egr3,0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,10,19,13655,ENSMUSG00000033730,conserved gene and region,14,70076729,70076767,39,*,39,7,0.794871795,1.197368421,0.17948718,0.000000196,CpGisland,TRUE,U3,Pr-B
10605,cg16781658,0.0000101,0.000011,0.917869105,0.359400958,gain,ns,0.0000555,0.0000187,2.974703779,0.003163142,pos,ns,0.021732632,0.005464109,3.977342303,0.0000868,pos,ns,4.061479017,-0.000610576,0.00018791,-3.249298043,0.001283961,neg,ns,0.499316205,Acin1,Acin1_Exon,14,54650910,54650959,54650958,54650959,50,-,AGAAGGACCTTGTAATAAATAATATTCTGCACATCAAATCACTTTCACCG,"Exon (Acin1-214/Acin1, exon 3 of 3)",14,54642161,54653616,11456,2,Acin1-208,2657,Acin1-208;Acin1-216;Acin1-202;Acin1-201;Acin1-219;Acin1-218;Acin1-221;Acin1-224;Acin1-203;Acin1-205;Acin1-211;Acin1-225;Acin1-207;Acin1-204;Acin1-226;Acin1-213;Acin1-214;Acin1-209;Acin1-220;Gm17606-201,Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Gm17606,0;0;0;0;0;0;0;0;0;0;-4863;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,22,56215,ENSMUSG00000022185,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14910,cg22632094,-0.0000649,0.00000882,-7.361791399,1.65E-12,loss,yes,-0.0000445,0.000015,-2.973442891,0.003175799,neg,ns,0.01796909,0.004388724,4.094377177,0.0000541,pos,ns,4.267129217,-0.000609858,0.000150928,-4.040726848,0.0000673,neg,ns,0.864449501,Fam222b,Fam222b_fiveUTR,11,78153889,78153938,78153889,78153890,50,+,CGACACAGGCTGCCACCAAGGCAGGCCTGCTTGCCATTGTCAAAGTGCCA,5' UTR,11,78094660,78156700,62041,1,Fam222b-201,59229,Fam222b-201;Fam222b-202;Fam222b-203;Gm12571-201;Traf4-203,Fam222b;Fam222b;Fam222b;Gm12571;Traf4,0;0;0;-4451;11651,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,10,21,216971,ENSMUSG00000037750,conserved gene and region,11,78153825,78153900,76,*,76,9,0.631578947,1.266666667,0.118421053,8.12E-08,CpGisland,TRUE,U10,Tr-S
23901,cg21065165,0.00000304,0.00000479,0.635641802,0.525478866,gain,ns,-0.0000242,0.00000813,-2.973157551,0.00317867,neg,ns,-0.005746478,0.002382933,-2.411514167,0.016467498,neg,ns,1.78337239,0.0000426,0.0000819,0.520325051,0.603208435,pos,ns,0.901959532,Smap2,Smap2_Exon,4,120982137,120982186,120982185,120982186,50,-,TTGATGTCCAGACTTCGGTCCATGTATTTCTTCTTCTCATATTTGTCTCG,"Exon (Smap2-201/Smap2, exon 4 of 10)",4,120968317,121017247,48931,2,Smap2-201,35061,Smap2-201,Smap2,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,69780,ENSMUSG00000032870,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18239,cg19194917,0.0000294,0.00000466,6.322553934,8.96E-10,gain,yes,-0.0000235,0.00000791,-2.973009524,0.00318016,neg,ns,-0.005199176,0.002317475,-2.243466057,0.025572676,neg,ns,1.592223816,0.0000535,0.0000797,0.671037064,0.502696587,pos,ns,0.908330675,Ap3b1,Ap3b1_Intergenic_downstream,13,94576079,94576128,94576079,94576080,50,+,CGCCGGCAGCCGGTCCCATTGTTTGCCCTTGATGAGCATGTCATTAATGG,Distal Intergenic,13,94542303,94547867,5565,1,Ap3b1-202,33776,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,33,55,11774,ENSMUSG00000021686,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17196,cg07991826,0.0000011,0.0000011,0.998129019,0.318995261,gain,ns,-0.00000555,0.00000187,-2.971969355,0.003190651,neg,ns,-0.001408747,0.000547341,-2.573799897,0.010523172,neg,ns,1.977853328,-0.00000619,0.0000188,-0.328677344,0.742621497,neg,ns,0.983470738,Clk2,Clk2_Exon,3,89169627,89169676,89169627,89169628,50,+,CGGAGAGCCAAGAGTGTAGAGGACGACGCTGAGGGCCACCTCATCTACCA,"Exon (Clk2-202/Clk2, exon 4 of 13)",3,89164795,89176921,12127,1,Clk2-202,4832,Clk2-202;Clk2-210;Clk2-201;Clk2-209;Clk2-207;Clk2-203;Clk2-204;Clk2-206;Clk2-211;Clk2-205,Clk2;Clk2;Clk2;Clk2;Clk2;Clk2;Clk2;Clk2;Clk2;Clk2,0;4810;0;0;0;0;0;0;0;-4279,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,10,12748,ENSMUSG00000068917,conserved gene and region,3,89169381,89169717,337,*,337,23,0.637982196,0.717685185,0.068249258,4.95E-14,CpGisland,TRUE,U10,Tr-S
6293,cg10220925,0.00000524,0.00000338,1.551373902,0.121832383,gain,ns,-0.0000171,0.00000574,-2.970641958,0.003204083,neg,ns,-0.00535644,0.001681875,-3.184801932,0.001595858,neg,ns,2.797005769,0.0000825,0.0000578,1.426915367,0.154610701,pos,ns,0.896209443,Stt3a,Stt3a_Exon,9,36734361,36734410,36734409,36734410,50,-,AGGACATCAAGCTCAAAGTCTTTATTCCCAATCTCAGCATTTCGGACACG,"Exon (Stt3a-201/Stt3a, exon 17 of 18)",9,36729344,36767679,38336,2,Stt3a-201,33269,Stt3a-201;Stt3a-204,Stt3a;Stt3a,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,16430,ENSMUSG00000032116,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14765,cg00060633,-0.00000144,0.00000358,-0.402888414,0.687308018,loss,ns,0.0000181,0.00000608,2.970424653,0.003206287,pos,ns,0.004738044,0.001782393,2.658248874,0.008262319,pos,ns,2.082898018,-0.000111675,0.0000613,-1.821894269,0.069434526,neg,ns,0.924323436,Taok1,Taok1_Exon,11,77578742,77578791,77578742,77578743,50,-,CGTAAATAACAGCCTTTGTATTCTATACTGTTGGGATGTTTTATTCTTTG,"Exon (Taok1-201/Taok1, exon 3 of 19)",11,77529162,77585506,56345,2,Taok1-201,6715,Taok1-201;Taok1-202,Taok1;Taok1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,216965,ENSMUSG00000017291,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21942,cg01330940,0.0000128,0.000015,0.847517518,0.397360579,gain,ns,0.0000759,0.0000256,2.969866089,0.003211959,pos,ns,0.006341049,0.007487803,0.846850395,0.397731791,pos,ns,0.400409694,0.000133771,0.000257505,0.519488811,0.60379062,pos,ns,0.684049698,Ntng1,Ntng1_threeUTR,3,109782118,109782167,109782166,109782167,50,+,CTAACATCAGACAAAGAAATCTTTCAACCAACAAGGGTTACAGAGCAACG,3' UTR,3,109780040,110143004,362965,2,Ntng1-211,360837,Ntng1-211;Ntng1-208;Ntng1-206;Ntng1-202;Ntng1-203;Ntng1-204;Ntng1-205;Ntng1-207;Ntng1-209;Ntng1-210,Ntng1;Ntng1;Ntng1;Ntng1;Ntng1;Ntng1;Ntng1;Ntng1;Ntng1;Ntng1,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,7,80883,ENSMUSG00000059857,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4883,cg19097839,0.00000906,0.00000246,3.680574839,0.000274374,gain,ns,-0.0000124,0.00000418,-2.9690265,0.003220501,neg,ns,-0.002880218,0.001225078,-2.351047339,0.019346654,neg,ns,1.713394125,0.0000665,0.0000421,1.578889498,0.115381218,pos,ns,0.822093988,Aplp2,Aplp2_Exon,9,31167573,31167622,31167621,31167622,50,-,ACACAGCCATACAATAATCCTCAGACTCAAAATTGTTCCTGTTGCCGCCG,"Exon (Aplp2-201/Aplp2, exon 7 of 17)",9,31149557,31211787,62231,2,Aplp2-209,44165,Aplp2-209;Aplp2-201;Aplp2-202;Aplp2-203;Aplp2-208;Aplp2-206,Aplp2;Aplp2;Aplp2;Aplp2;Aplp2;Aplp2,0;0;0;0;0;2952,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,11804,ENSMUSG00000031996,conserved gene and region,9,31167618,31167704,87,*,87,9,0.620689655,1.0875,0.103448276,0.000000274,CpGisland,TRUE,U10,Tr-S
16607,cg03717442,0.0000898,0.0000122,7.362082242,1.64E-12,gain,yes,-0.0000615,0.0000207,-2.968829533,0.003222508,neg,ns,-0.003671881,0.006071178,-0.60480536,0.545750764,neg,ns,0.263005647,0.00033273,0.000208787,1.593629799,0.11203802,pos,ns,0.589389696,Six3,Six3_threeUTR,17,85624212,85624261,85624212,85624213,50,-,CGGGCAGAAAACATAAAAGAGGTGACAATTGTATACTTTCTAGGACAAGC,3' UTR,17,85613608,85625222,11615,1,Six3-202,10604,Six3-202;Six3-203;Six3-201,Six3;Six3;Six3,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,24,20473,ENSMUSG00000038805,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
5833,cg16947402,0.0000451,0.00000748,6.025245417,4.78E-09,gain,yes,-0.0000377,0.0000127,-2.968508284,0.003225784,neg,ns,-0.016911383,0.003723589,-4.541688557,0.000008,neg,ns,5.096867572,0.000437966,0.000128054,3.420171589,0.00070964,pos,ns,0.737870669,Msantd1,Msantd1_fiveUTR,5,34917443,34917492,34917491,34917492,50,-,TGCAGTTGCTCTGTTGCTATGGAAACGTGACATCAAAATGACGTTTCCCG,5' UTR,5,34908012,34917816,9805,1,Msantd1-202,9431,Htt-201;Msantd1-202;Msantd1-204;Msantd1-201;Msantd1-203,Htt;Msantd1;Msantd1;Msantd1;Msantd1,0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,4,403174,ENSMUSG00000051246,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19278,cg00568797,0.0000316,0.000006,5.266968917,0.00000026,gain,yes,-0.0000303,0.0000102,-2.967447568,0.003236622,neg,ns,0.011695103,0.002987256,3.914998037,0.000111201,pos,ns,3.953892391,-0.000429362,0.000102731,-4.179461317,0.0000381,neg,ns,0.670509938,Foxp1,Foxp1_Intron,6,98930967,98931016,98931015,98931016,50,-,TTTACAAACTGTCAATAAGGCAAGAAAAGCCCTGCCAGGAAACACAAACG,"Intron (Foxp1-206/Foxp1, intron 17 of 17)",6,98925338,99266515,341178,2,Foxp1-206,335499,Foxp1-206;Foxp1-204;Foxp1-229;Foxp1-220;Foxp1-230;Foxp1-225;Foxp1-201;Foxp1-205;Foxp1-207;Foxp1-208;Foxp1-226;Foxp1-228;Foxp1-221;Foxp1-222;Foxp1-217,Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1,0;0;-1182;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,87,108655,ENSMUSG00000030067,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18950,cg20782692,0.00000255,0.00000147,1.736859002,0.083405388,gain,ns,0.00000741,0.0000025,2.966765992,0.003243604,pos,ns,0.003601816,0.000732153,4.919486849,0.00000141,pos,ns,5.850514656,-0.000108421,0.0000252,-4.306059616,0.0000223,neg,ns,0.963695114,Mitf,Mitf_threeUTR,6,98010427,98010476,98010427,98010428,50,+,CGCATTAAAGAACTAGGTACTTTGATTCCCAAGTCAAATGATCCGTGAGT,3' UTR,6,97807052,98018593,211542,1,Mitf-207,203375,Mitf-207;Mitf-202;Mitf-203;Mitf-204;Mitf-201;Mitf-205;Mitf-208,Mitf;Mitf;Mitf;Mitf;Mitf;Mitf;Mitf,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,16,17342,ENSMUSG00000035158,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13422,cg24151104,-0.0000258,0.0000134,-1.929761266,0.054548687,loss,ns,0.0000673,0.0000227,2.966719966,0.003244076,pos,ns,-0.002497745,0.006647262,-0.37575542,0.707355728,neg,ns,0.150362125,0.0000783,0.000228599,0.342490563,0.732213843,pos,ns,0.527728853,Rpl9-ps7,Rpl9-ps7_Intergenic_upstream,2,70444374,70444423,70444422,70444423,50,+,AACAGATGGTGGGACCAGCTGTCTTTTTCAGCCATTTAATAAACTCTTCG,Distal Intergenic,2,70458982,70459560,579,1,Rpl9-ps7-201,-14559,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,100040021,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27389,cg07352145,0.0000601,0.0000236,2.546773583,0.011355567,gain,ns,-0.000118853,0.0000401,-2.966321695,0.003248162,neg,ns,0.038040699,0.011738422,3.240699468,0.001321996,pos,ns,2.878769764,-0.001528027,0.000403683,-3.785212508,0.000184363,neg,ns,0.451311137,Pou2f1,Pou2f1_Intron,1,166001233,166001282,166001233,166001234,50,+,CGGGGAAAGCCAGGCGGCCATTTCAATAATATAAACCTCCCCGAATTAGA,"Intron (Pou2f1-208/Pou2f1, intron 1 of 16)",1,165865154,166002678,137525,2,Pou2f1-208,1396,Pou2f1-208;Pou2f1-206;Pou2f1-216;Pou2f1-209;Pou2f1-201;Pou2f1-215;Pou2f1-214;Pou2f1-211;Pou2f1-212,Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,18,18986,ENSMUSG00000026565,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
4860,cg14920842,-0.0000353,0.00000537,-6.573339796,2.08E-10,loss,yes,-0.000027,0.00000912,-2.965748748,0.003254049,neg,ns,0.003234104,0.002670602,1.211001709,0.22681715,pos,ns,0.64432411,-0.000327108,0.0000918,-3.561646436,0.000426428,neg,ns,0.877073378,Zbtb44,Zbtb44_Exon,9,31066744,31066793,31066792,31066793,50,+,TAAACGCTGTTTCCGGTGCCAGATATGTAGTGCCACTTTCACTTCCTTCG,"Exon (Zbtb44-206/Zbtb44, exon 4 of 5)",9,31030644,31070233,39590,1,Zbtb44-205,36100,Zbtb44-205;Zbtb44-201;Zbtb44-206;Zbtb44-202;Zbtb44-204,Zbtb44;Zbtb44;Zbtb44;Zbtb44;Zbtb44,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,15,235132,ENSMUSG00000047412,conserved gene and region,9,31066713,31066901,189,*,189,12,0.486772487,1.07641196,0.063492064,0.00000032,CpGisland,TRUE,U10,Tr-S
16025,cg22263440,-0.00000125,0.00000123,-1.018060812,0.309442926,loss,ns,0.00000618,0.00000208,2.96571413,0.003254405,pos,ns,0.001415449,0.000610819,2.317295591,0.0211388,pos,ns,1.674919676,-0.000044,0.000021,-2.092257014,0.037228624,neg,ns,0.969349794,Zfp407,Zfp407_Intron,18,84242368,84242417,84242368,84242369,50,+,CGCCTCCAACAGACTGTGGTTTTATGAGAAATCAGTCTTTTAATCAAAAT,"Intron (Zfp407-201/Zfp407, intron 2 of 2)",18,84128027,84558425,430399,2,Zfp407-201,316008,Zfp407-201;Zfp407-202,Zfp407;Zfp407,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,32,240476,ENSMUSG00000048410,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17448,cg00696623,0.00000907,0.00000222,4.088903937,0.0000553,gain,ns,-0.0000112,0.00000377,-2.965386641,0.003257775,neg,ns,-0.001793351,0.001103776,-1.62474201,0.105233785,neg,ns,0.977844809,0.0000483,0.000038,1.272218087,0.204249108,pos,ns,0.932647652,Ankrd17,Ankrd17_Exon,5,90300012,90300061,90300060,90300061,50,+,TGTGCTTTCAGCTCTCATACGGGTAAGTGCAGCAGCAGCTTCATCCAACG,"Exon (Ankrd17-201/Ankrd17, exon 3 of 34)",5,90227166,90366577,139412,2,Ankrd17-201,66516,Ankrd17-201;Ankrd17-203;Ankrd17-202;Ankrd17-205;Ankrd17-212;Ankrd17-214;Ankrd17-210,Ankrd17;Ankrd17;Ankrd17;Ankrd17;Ankrd17;Ankrd17;Ankrd17,0;0;0;0;0;0;-4880,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,11,12,81702,ENSMUSG00000055204,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10693,cg20237752,0.0000145,0.00000437,3.326976483,0.000983556,gain,ns,-0.000022,0.00000743,-2.96507159,0.00326102,neg,ns,0.003359094,0.002176416,1.543406037,0.123752464,pos,ns,0.907446146,-0.000199181,0.0000748,-2.661185539,0.008192224,neg,ns,0.038142998,Zfp608,Zfp608_Exon,18,54988061,54988110,54988061,54988062,50,-,CGCTGAATTCATGCCAGTTGCCTCTCCAGGGCGCCCTTGGACTTCCTGCC,"Exon (Zfp608-201/Zfp608, exon 2 of 10)",18,54888048,54990166,102119,2,Zfp608-201,2056,Zfp608-201;Zfp608-203,Zfp608;Zfp608,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,32,269023,ENSMUSG00000052713,conserved gene and region,18,54987980,54988133,154,*,154,11,0.642857143,0.694831829,0.071428571,0.000000364,CpGisland,TRUE,U1,Pr-A
6800,cg12179980,0.0000231,0.00000753,3.073601778,0.002302847,gain,ns,0.0000379,0.0000128,2.964795938,0.003263861,pos,ns,0.01029067,0.003747482,2.746022672,0.00638464,pos,ns,2.194863596,-0.000269407,0.000128876,-2.090439827,0.037392623,neg,ns,0.481028076,Cul4b,Cul4b_Exon,X,38564123,38564172,38564123,38564124,50,-,CGGAGTGGTGCTGGTATTACCATCAGTGGCAGATCTGACCTCCTGAGCAG,Promoter (<=1kb),20,38533274,38564525,31252,2,Cul4b-201,353,Cul4b-201;Cul4b-203;Cul4b-204;Cul4b-202,Cul4b;Cul4b;Cul4b;Cul4b,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,72584,ENSMUSG00000031095,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
26745,cg05377512,-0.0000229,0.00000305,-7.499517645,6.80E-13,loss,yes,-0.0000154,0.00000518,-2.964617365,0.003265703,neg,ns,0.004489447,0.001517843,2.957780404,0.003336945,pos,ns,2.476650901,-0.000172256,0.0000522,-3.300023282,0.001079473,neg,ns,0.928897892,Phf13,Phf13_Exon,4,151991602,151991651,151991602,151991603,50,-,CGGATGTCAAACTTGGAGTCCCGGCACTTTTGGCAGACAAACACTTCTGG,"Exon (Phf13-201/Phf13, exon 4 of 4)",4,151989633,151996258,6626,2,Phf13-201,4607,Phf13-201;Thap3-201;Thap3-202;Thap3-203,Phf13;Thap3;Thap3;Thap3,0;-2605;-2632;-2622,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,230936,ENSMUSG00000047777,conserved gene and region,4,151991572,151991760,189,*,189,13,0.566137566,0.875623664,0.068783069,0.000000034,CpGisland,TRUE,U10,Tr-S
2661,cg27231496,0.0000148,0.00000488,3.040616286,0.002562367,gain,ns,-0.0000246,0.00000829,-2.964600811,0.003265874,neg,ns,0.007716578,0.002427339,3.179027718,0.001626955,pos,ns,2.788624386,-0.000335793,0.0000835,-4.022634626,0.0000724,neg,ns,0.905998133,Vcl,Vcl_Exon,14,21029185,21029234,21029233,21029234,50,-,ATCATTGCAGCAGCCAAGCGCATGGCTCTGCTGATGGCTGAGATGTCTCG,"Exon (Vcl-201/Vcl, exon 19 of 21)",14,20929398,21033676,104279,1,Vcl-201,99787,Ap3m1-206;Vcl-201;Vcl-202,Ap3m1;Vcl;Vcl,23216;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,8,22330,ENSMUSG00000021823,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22520,cg19746734,0.0000155,0.0000266,0.582987752,0.560325387,gain,ns,0.000133838,0.0000452,2.963836329,0.003273771,pos,ns,0.047533627,0.013229484,3.593006981,0.000380049,pos,ns,3.420160261,-0.001822077,0.000454961,-4.004908602,0.0000777,neg,ns,0.724455458,Wwox,Wwox_Intron,8,114908172,114908221,114908220,114908221,50,-,CTTTCTTTGATGTCCCAATTCTATATTTAAATAGTGCAAGATTTCTATCG,"Intron (Wwox-201/Wwox, intron 8 of 8)",8,114439655,115352708,913054,1,Wwox-201,468517,Wwox-201;Wwox-204;Wwox-209,Wwox;Wwox;Wwox,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,32,32,80707,ENSMUSG00000004637,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27015,cg03824676,0.0000258,0.00000956,2.700361774,0.007306952,gain,ns,-0.0000481,0.0000162,-2.963240457,0.003279938,neg,ns,0.01278745,0.004756275,2.688542977,0.00756448,pos,ns,2.121220934,-0.000407636,0.000163568,-2.492152382,0.013219233,neg,ns,0.105343836,Rbm39,Rbm39_threeUTR,2,156177842,156177891,156177842,156177843,50,+,CGCCCATTTCCGTTGGAGGGTTGGGACTGTAAGAGCTTGATGCCACCTCT,3' UTR,2,156147239,156180238,33000,2,Rbm39-203,2347,Rbm39-203;Rbm39-217;Rbm39-215;Rbm39-201;Rbm39-225;Rbm39-223;Rbm39-204;Rbm39-216;Rbm39-221;Rbm39-213;Rbm39-214;Rbm39-218;Rbm39-219;Rbm39-210;Rbm39-224;Rbm39-212;Rbm39-202;Rbm39-208;Rbm39-222;Rbm39-205;Rbm39-211,Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,11,13,170791,ENSMUSG00000027620,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U4,Pr-F
22091,cg00810883,0.0000491,0.0000137,3.584289468,0.000392442,gain,ns,0.000069,0.0000233,2.963186238,0.0032805,pos,ns,0.030932465,0.006817612,4.537140683,0.00000816,pos,ns,5.088086948,-0.000601263,0.000234457,-2.564490661,0.010803522,neg,ns,0.204101827,Pou3f4,Pou3f4_fiveUTR,X,110814412,110814461,110814460,110814461,50,+,GCTGAAGCTGCTCCCTTTGCCACATTATAACTAGTAGGGGATCCTCACCG,Promoter (<=1kb),20,110814280,110817207,2928,1,Pou3f4-201,132,Pou3f4-201,Pou3f4,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,7,18994,ENSMUSG00000056854,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17833,cg22971493,-0.000071,0.0000227,-3.120354564,0.001976294,loss,ns,0.000114479,0.0000386,2.963141554,0.003280963,pos,ns,0.010179066,0.01131852,0.899328408,0.36917579,pos,ns,0.432766787,-0.0004969,0.000389243,-1.276579376,0.202706258,neg,ns,0.497425745,Irx3,Irx3_Exon,8,91991653,91991702,91991701,91991702,50,+,TGAGCTGGGCTGGGAGCTTCCACAATACCTGAGTGGTTAATTAAGAGCCG,"Exon (Gm36670-202/Gm36670-202, exon 1 of 3)",8,91798525,91802067,3543,2,Irx3-202,-189586,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,16,36,16373,ENSMUSG00000031734,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
16312,cg23169811,-0.0000158,0.00000253,-6.247295648,1.38E-09,loss,yes,-0.0000127,0.0000043,-2.963133024,0.003281051,neg,ns,-0.002891723,0.001259701,-2.295563503,0.022368195,neg,ns,1.650369052,-0.0000223,0.0000433,-0.515414785,0.606630556,neg,ns,0.926868659,Trip12,Trip12_Exon,1,84731643,84731692,84731691,84731692,50,-,CCTTGGCCATTAATTTTCCTAAGAAGCGAAACTTCATCTTAACCTTTGCG,"Exon (Trip12-201/Trip12, exon 35 of 41)",1,84721189,84839304,118116,2,Trip12-201,107612,Trip12-201;Trip12-206;Trip12-212;Trip12-207;Trip12-209;Trip12-218;Trip12-204,Trip12;Trip12;Trip12;Trip12;Trip12;Trip12;Trip12,0;0;0;0;0;-2767;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,11,14897,ENSMUSG00000026219,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5189,cg13037365,0.00000975,0.00000261,3.729922237,0.000227718,gain,ns,-0.0000132,0.00000444,-2.962737317,0.003285154,neg,ns,-0.00011231,0.001300719,-0.086344688,0.931248157,neg,ns,0.030934574,0.0000106,0.0000447,0.238009494,0.812030969,pos,ns,0.886463665,Fbxw11,Fbxw11_Exon,11,32652752,32652801,32652752,32652753,50,+,CGAAGTGCATGTTTGGGATTTTGTTGAAGAAAGCTGGATACAGTAAACGG,"Exon (Fbxw11-204/Fbxw11, exon 2 of 2)",11,32642724,32746569,103846,1,Fbxw11-203,10028,Fbxw11-203;Fbxw11-204;Fbxw11-202;Fbxw11-201;Fbxw11-205,Fbxw11;Fbxw11;Fbxw11;Fbxw11;Fbxw11,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,4,103583,ENSMUSG00000020271,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
333,cg26624269,0.000102494,0.0000177,5.788832754,1.74E-08,gain,yes,0.0000891,0.0000301,2.961885575,0.003294,pos,ns,0.01805538,0.00881218,2.048911744,0.041312367,pos,ns,1.383919926,-0.00012426,0.00030305,-0.410031578,0.682065997,neg,ns,0.450519136,Zfhx4,Zfhx4_Intron,3,5203408,5203457,5203408,5203409,50,-,CGGAATTGTTTAAAGAAGATATTAGCCTCAATACAAATCAGTGAACCTCA,"Intron (2700069I18Rik-201/2700069I18Rik-201, intron 1 of 2)",3,5218526,5413165,194640,1,Zfhx4-203,-15118,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,27,77,80892,ENSMUSG00000025255,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3584,cg21117683,0.0000322,0.00000843,3.821500328,0.000160282,gain,ns,-0.0000424,0.0000143,-2.960666027,0.003306705,neg,ns,-0.009392921,0.004197292,-2.237852427,0.025940705,neg,ns,1.586018221,0.00043191,0.000144345,2.992216802,0.002992046,pos,ns,0.065549569,Smarcd3,Smarcd3_Exon,5,24601789,24601838,24601837,24601838,50,+,GGACCAGAAACTCAAAAAGTTTGCTTTTCGTGGCTTTGCGCGCCCCTCCG,Promoter (<=1kb),5,24590818,24601976,11159,2,Smarcd3-205,138,Smarcd3-205;Smarcd3-201;Smarcd3-208;Smarcd3-207;Smarcd3-203;Smarcd3-206;Smarcd3-204;Smarcd3-202,Smarcd3;Smarcd3;Smarcd3;Smarcd3;Smarcd3;Smarcd3;Smarcd3;Smarcd3,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,66993,ENSMUSG00000028949,conserved gene and region,5,24601817,24601874,58,*,58,9,0.74137931,1.12987013,0.155172414,6.08E-09,CpGisland,TRUE,U3,Pr-B
15346,cg06167345,-0.00000848,0.0000308,-0.275788521,0.782894251,loss,ns,0.000154688,0.0000523,2.96049549,0.003308485,pos,ns,-0.009925047,0.015307708,-0.648369215,0.517226141,neg,ns,0.286319534,0.000806929,0.000526431,1.532830557,0.126337481,pos,ns,0.124307304,Dcaf5,Dcaf5_Exon,12,80436200,80436249,80436248,80436249,50,+,GGCCTCCATTGTTGGAGAATTCAATGGCATTGACACAGCCGAAGTGGCCG,Promoter (<=1kb),12,80335848,80436601,100754,2,Dcaf5-201,352,Dcaf5-201;Dcaf5-202,Dcaf5;Dcaf5,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,6,320808,ENSMUSG00000049106,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
19627,cg14728698,-0.0000166,0.0000126,-1.316349996,0.189029034,loss,ns,0.0000633,0.0000214,2.959955226,0.003314131,pos,ns,0.003445353,0.006261045,0.550283913,0.582520938,pos,ns,0.23468846,-0.0000297,0.000215317,-0.13791123,0.89040011,neg,ns,0.624508513,Gm8641,Gm8641_Intergenic_upstream,9,100167596,100167645,100167644,100167645,50,+,AATAAAGATATTGGTCCTTGGGAGTCTATCCTCTCTCTCATGTTATTTCG,Distal Intergenic,9,99946564,99947389,826,2,Gm8641-201,-220207,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,15,667456,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6693,cg15396498,0.0000663,0.00000941,7.045984347,1.20E-11,gain,yes,-0.0000473,0.000016,-2.959940928,0.00331428,neg,ns,-0.010372205,0.004684156,-2.214316844,0.027534224,neg,ns,1.560127167,0.000261341,0.000161088,1.622353812,0.105744127,pos,ns,0.777038764,Arap3,Arap3_Intergenic_upstream,18,38064499,38064548,38064499,38064500,50,+,CGCAGGTAATTATGTCTCTTTTAAGCCGCTAACAGGATTGGCCATTTGAT,Distal Intergenic,18,37996312,37998969,2658,2,Arap3-203,-65530,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,10,106952,ENSMUSG00000024451,conserved gene but different region,18,38064372,38064500,129,*,129,9,0.558139535,0.898606811,0.069767442,0.00000752,CpGisland,TRUE,U11,Tr-P
25364,cg18445981,-0.00000384,0.00000126,-3.041054382,0.002558751,loss,ns,0.00000635,0.00000215,2.958711982,0.003327155,pos,ns,0.001308939,0.000629013,2.080942721,0.03825981,pos,ns,1.417257189,-0.0000312,0.0000216,-1.442917231,0.150053447,neg,ns,0.960565677,Gm9341,Gm9341_Intergenic_downstream,7,136030970,136031019,136030970,136030971,50,+,CGCTGTTCAGAGATTCTTGTACTAAGCAGGTTAATTAAACCTTAATTTGA,Distal Intergenic,7,135952798,135953783,986,1,Gm9341-201,78172,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,27,28,668764,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18002,cg09492859,0.0000356,0.0000174,2.040722976,0.042125232,gain,ns,0.0000876,0.0000296,2.95862366,0.003328082,pos,ns,0.024138278,0.008674595,2.782640322,0.005722527,pos,ns,2.242412166,-0.00045176,0.000298319,-1.514355728,0.130954532,neg,ns,0.422528903,Arx,Arx_threeUTR,X,93298274,93298323,93298322,93298323,50,+,ATGTGTAATTGTTACCACTTTTCCTTGCTATCTAGTGGAGAAGTGTCACG,3' UTR,20,93286496,93298357,11862,1,Arx-201,11778,Arx-201;Arx-202,Arx;Arx,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,32,11878,ENSMUSG00000035277,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
18766,cg13782531,0.000200564,0.0000175,11.48353628,1.14E-25,gain,yes,-0.0000878,0.0000297,-2.958288191,0.003331606,neg,ns,0.058070078,0.008692671,6.680348961,1.10E-10,pos,yes,9.956767662,-0.000605949,0.00029894,-2.026989034,0.043519071,neg,ns,0.558278648,Npepps,Npepps_threeUTR,11,97240948,97240997,97240996,97240997,50,-,AACCATTGATGGGCGAGTTCATGTCCCACAACCAGAGCAACCCACTGGCG,3' UTR,11,97205842,97280486,74645,2,Npepps-215,39489,Npepps-215;Npepps-219;Npepps-201;Npepps-214;Npepps-213;Npepps-208;Npepps-211;Npepps-209;Npepps-205;Npepps-216;Npepps-210,Npepps;Npepps;Npepps;Npepps;Npepps;Npepps;Npepps;Npepps;Npepps;Npepps;Npepps,0;0;0;0;0;0;0;0;0;0;39473,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,5,19155,ENSMUSG00000001441,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
392,cg02495570,-0.00000379,0.00000234,-1.621990106,0.105822021,loss,ns,-0.0000117,0.00000397,-2.95790537,0.003335631,neg,ns,-0.001566823,0.001163577,-1.346557726,0.179106398,neg,ns,0.746888901,-0.0000184,0.00004,-0.460169905,0.645716867,neg,ns,0.958275843,Zfhx4,Zfhx4_Intron,3,5357924,5357973,5357924,5357925,50,-,CGAGTTAAAGGCTGATGACGCTAACGAATCCCAGCGCAAATGACTGAATC,"Intron (Zfhx4-203/Zfhx4, intron 4 of 10)",3,5218526,5413165,194640,1,Zfhx4-203,139398,Zfhx4-203;Zfhx4-201;Zfhx4-205,Zfhx4;Zfhx4;Zfhx4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,27,77,80892,ENSMUSG00000025255,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16114,cg06764225,-0.0000368,0.0000155,-2.373193656,0.018244521,loss,ns,0.0000778,0.0000263,2.957420061,0.003340739,pos,ns,-0.003235017,0.007711595,-0.419500432,0.675140998,neg,ns,0.170605519,-0.0000543,0.000265201,-0.204751757,0.837900449,neg,ns,0.661158773,Gm26927,Gm26927_Intergenic_upstream,13,84438626,84438675,84438674,84438675,50,-,TTTCACCTCTAGGTTATTGGTTTGTATCTGACCCAGGTGATGAAAAGTCG,Distal Intergenic,13,84339149,84340113,965,2,Gm26927-201,-98562,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,3,102631850,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16015,cg14763613,0.000082,0.00000599,13.70328572,9.67E-34,gain,yes,-0.0000301,0.0000102,-2.956589892,0.003349495,neg,ns,-0.008547583,0.002979225,-2.869062272,0.004399589,neg,ns,2.356587852,0.000375855,0.000102455,3.668474284,0.000287117,pos,ns,0.814860365,Trim2,Trim2_Exon,3,84210221,84210270,84210221,84210222,50,-,CGTTCCAGGCATATACTGCAAATCAGAAACTGCTTGTCAATCTGGCGCAC,"Exon (Trim2-204/Trim2, exon 2 of 12)",3,84160439,84304809,144371,2,Trim2-204,94539,Trim2-204;Trim2-203;Trim2-206;Trim2-205;Trim2-202;Trim2-208;Trim2-201;Trim2-212;Trim2-207;Trim2-209;Trim2-215;Trim2-210;Trim2-214;Trim2-217,Trim2;Trim2;Trim2;Trim2;Trim2;Trim2;Trim2;Trim2;Trim2;Trim2;Trim2;Trim2;Trim2;Trim2,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,4,80890,ENSMUSG00000027993,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24514,cg23893180,0.000000559,0.00000515,0.108454256,0.913705529,gain,ns,-0.0000259,0.00000875,-2.955795561,0.003357892,neg,ns,-0.007619083,0.002564825,-2.970604903,0.003204459,neg,ns,2.494245273,-0.0000893,0.0000882,-1.011994938,0.312329688,neg,ns,0.85370919,Psmb2,Psmb2_Intron,4,126700382,126700431,126700430,126700431,50,-,CTTGCTGTGACTTTAGCTTCCGCCAGATGTCACACCGCTGCTTGTCACCG,"Intron (Psmb2-201/Psmb2, intron 3 of 5)",4,126677630,126709714,32085,1,Psmb2-201,22752,Psmb2-201;Psmb2-203,Psmb2;Psmb2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,26445,ENSMUSG00000028837,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17493,cg18441871,0.000014,0.00000297,4.713168758,0.00000369,gain,ns,-0.0000149,0.00000505,-2.953595789,0.003381248,neg,ns,-0.001342894,0.001480024,-0.907345728,0.364928765,neg,ns,0.437791902,0.0000504,0.0000509,0.989471606,0.323204127,pos,ns,0.937999016,Chtop,Chtop_Exon,3,90502238,90502287,90502238,90502239,50,-,CGGAGCAGGTTTTGACCTTAGAGAGGAGGCATACAATGTATATGCAGGTA,"Exon (Chtop-201/Chtop, exon 4 of 5)",3,90498956,90509450,10495,2,Chtop-205,7163,Chtop-205;Chtop-201;Chtop-206;Chtop-203;Chtop-202;Chtop-207;Chtop-204;Chtop-209;Chtop-208,Chtop;Chtop;Chtop;Chtop;Chtop;Chtop;Chtop;Chtop;Chtop,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,10,66511,ENSMUSG00000001017,conserved gene but different region,3,90502125,90502239,115,*,115,10,0.643478261,1.033243486,0.086956522,0.000000242,CpGisland,TRUE,U10,Tr-S
11472,cg09483526,0.0000735,0.00000946,7.772411704,1.14E-13,gain,yes,-0.0000475,0.0000161,-2.953019,0.003387397,neg,ns,0.026561781,0.004709636,5.639880067,3.83E-08,pos,ns,7.416347211,-0.000110207,0.000161964,-0.680442794,0.496732005,neg,ns,0.301613031,Clk1,Clk1_Exon,1,58420182,58420231,58420230,58420231,50,+,ACTCCTGGTTCTTTTCCTTCGGTGACTCTTCTGGAAACGTCAAGTGGGCG,"Exon (Clk1-212/Clk1, exon 3 of 11)",1,58410189,58424066,13878,2,Clk1-212,3835,Clk1-212;Clk1-202;Clk1-201;Clk1-210;Clk1-211;Clk1-213;Clk1-206;Clk1-204;Clk1-205;Clk1-209,Clk1;Clk1;Clk1;Clk1;Clk1;Clk1;Clk1;Clk1;Clk1;Clk1,0;-3417;0;0;0;0;0;0;-2756;3835,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,12747,ENSMUSG00000026034,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5056,cg27147137,-0.0000309,0.0000142,-2.173850719,0.030472766,loss,ns,0.0000714,0.0000242,2.952414849,0.003393848,pos,ns,-0.000120712,0.007082992,-0.017042533,0.986413648,neg,ns,0.005940928,0.000362508,0.000243584,1.488230163,0.137706721,pos,ns,0.593453412,Fam78a,Fam78a_Exon,2,32082803,32082852,32082803,32082804,50,+,CGGAAGACTCTGGCTTTGCCTCCGATGCTCTGAATACAGCCCATGGCATA,"Exon (Fam78a-203/Fam78a, exon 2 of 6)",2,32050055,32084669,34615,2,Fam78a-203,1817,Fam78a-203;Fam78a-201;Fam78a-202;Fam78a-204,Fam78a;Fam78a;Fam78a;Fam78a,0;0;-3451;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,241303,ENSMUSG00000050592,conserved gene and region,2,32082597,32082860,264,*,264,15,0.571969697,0.695468915,0.056818182,2.97E-08,CpGisland,TRUE,NA,NRS
16469,cg03746795,0.00000905,0.00000272,3.322096653,0.001000312,gain,ns,-0.0000137,0.00000463,-2.95179591,0.003400469,neg,ns,-0.0000373,0.001355795,-0.027531607,0.978053446,neg,ns,0.009637412,0.0000104,0.0000466,0.223542794,0.82326032,pos,ns,0.880097422,Ylpm1,Ylpm1_threeUTR,12,85069684,85069733,85069684,85069685,50,-,CGGACAGACTGATTGGGAGAAGATCACAGATGAAAGTGGTCACCTGGCTG,3' UTR,12,84996321,85070492,74172,1,Ylpm1-207,73363,Ylpm1-207;Ylpm1-201;Ylpm1-202;Ylpm1-203;Ylpm1-206;Ylpm1-205,Ylpm1;Ylpm1;Ylpm1;Ylpm1;Ylpm1;Ylpm1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,13,56531,ENSMUSG00000021244,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25845,cg14629221,0.000044,0.0000119,3.691496841,0.000263331,gain,ns,-0.0000598,0.0000203,-2.951116407,0.003407751,neg,ns,-0.001836992,0.005936936,-0.309417501,0.757211829,neg,ns,0.12078261,-0.000198541,0.000204171,-0.972428135,0.331595744,neg,ns,0.370782287,Gm42424,Gm42424_Intergenic_upstream,5,139682227,139682276,139682275,139682276,50,-,GTGTTAATGAGCTAAAAGCAACCCAAATTAAATTAATGCAGTAATAAGCG,Distal Intergenic,5,139701647,139702022,376,1,Gm42424-201,-19420,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,5,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
11124,cg02341818,-0.000141078,0.0000156,-9.044383434,1.69E-17,loss,yes,0.0000782,0.0000265,2.95079673,0.003411182,pos,ns,0.005575746,0.007763505,0.718199602,0.47317514,pos,ns,0.32497808,-0.0000888,0.000266986,-0.332611952,0.739652028,neg,ns,0.689515174,Pax9,Pax9_Promoter,12,56682955,56683004,56683003,56683004,50,+,GCATTCAGACACATGGCGACCCTTTTGCAATAAAACTTTATTGATGATCG,Promoter (8-9kb),12,56691767,56712707,20941,1,Pax9-203,-8763,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,7,18511,ENSMUSG00000001497,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
19855,cg00385093,-0.000114512,0.000014,-8.183372688,7.23E-15,loss,yes,-0.0000701,0.0000238,-2.949654335,0.003423468,neg,ns,0.031074829,0.006964561,4.461850596,0.0000114,pos,ns,4.943743448,-0.001701262,0.000239511,-7.103073907,8.40E-12,neg,yes,0.838165782,Psme3,Psme3_threeUTR,11,101321899,101321948,101321947,101321948,50,-,GTGAGTCTGGCTCAAGACCGACATTGCCTTGGTTTGTTACATGACTATCG,3' UTR,11,101316213,101323537,7325,1,Psme3-201,5686,Aoc2-201;Aoc2-202;Psme3-204;Psme3-201;Psme3-205;Psme3-202;Psme3-203,Aoc2;Aoc2;Psme3;Psme3;Psme3;Psme3;Psme3,-3115;-3139;0;0;4922;4876;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,3,19192,ENSMUSG00000078652,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1043,cg13431683,0.0000205,0.00000496,4.137402383,0.0000453,gain,ns,-0.0000249,0.00000843,-2.94950564,0.003425071,neg,ns,-0.007550643,0.002470632,-3.056158768,0.002436907,neg,ns,2.613161129,0.000129073,0.000085,1.519130018,0.129748972,pos,ns,0.9041433,Txndc11,Txndc11_threeUTR,16,11116862,11116911,11116862,11116863,50,-,CGGCGGACAAACTTCTCAATGTAAACAGCACTCATGGGGCCTTTGTATTC,3' UTR,16,11074911,11134650,59740,2,Txndc11-201,17739,Txndc11-201;Txndc11-202;Txndc11-205;Txndc11-204;Txndc11-209;Txndc11-207;Txndc11-203,Txndc11;Txndc11;Txndc11;Txndc11;Txndc11;Txndc11;Txndc11,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,3,106200,ENSMUSG00000022498,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2276,cg18690837,0.000227049,0.0000125,18.15085788,1.15E-50,gain,yes,-0.0000627,0.0000213,-2.949433514,0.003425848,neg,ns,0.018731694,0.00622586,3.008691701,0.002838879,pos,ns,2.546853153,0.000210702,0.000214107,0.984095317,0.325836076,pos,ns,0.3490639,Meis1,Meis1_threeUTR,11,18885589,18885638,18885637,18885638,50,-,TTGCCTGCTCGGTTGGACTGGTCTATCATGGGCTGCACTATTCTTCTCCG,3' UTR,11,18879817,19018985,139169,2,Meis1-206,133347,Meis1-206;Meis1-202;Meis1-209;Meis1-201;Meis1-203;Meis1-208;Meis1-207,Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,12,88,17268,ENSMUSG00000020160,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2965,cg11401677,-0.00000194,0.00000212,-0.91133976,0.362824493,loss,ns,0.0000106,0.00000361,2.948626598,0.003434556,pos,ns,0.003386868,0.001057205,3.203606093,0.001498358,pos,ns,2.824384552,-0.0000632,0.0000364,-1.739135003,0.083003681,neg,ns,0.945449818,Lrmda,Lrmda_Intron,14,22192312,22192361,22192360,22192361,50,-,TCCATCTTGGTGGCATCTGATGTTGATTGGCTTTGTCCTGCGCGGCTGCG,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,172600,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206,Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,14,22192352,22192427,76,*,76,8,0.565789474,1.375565611,0.105263158,0.00000148,CpGisland,TRUE,U11,Tr-P
11147,cg11980520,0.000000943,0.00000812,0.116244539,0.907534006,gain,ns,0.0000407,0.0000138,2.948572386,0.003435142,pos,ns,0.003190082,0.004039208,0.789779287,0.430260356,pos,ns,0.366268668,0.0000238,0.000138908,0.171044058,0.864300711,pos,ns,0.852216737,Lingo1,Lingo1_Intron,9,56746389,56746438,56746389,56746390,50,-,CGCCTAATTAAGCAGTTTATGAAAGTGTATGGATTTACATACTGCCACGC,"Intron (Lingo1-206/Lingo1, intron 2 of 6)",9,56618475,56796138,177664,2,Lingo1-206,49700,Lingo1-206;Lingo1-205;Lingo1-207;Lingo1-204;Lingo1-208,Lingo1;Lingo1;Lingo1;Lingo1;Lingo1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,25,235402,ENSMUSG00000049556,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21134,cg18709313,0.00000954,0.0000178,0.535302349,0.592824595,gain,ns,0.0000893,0.0000303,2.948545366,0.003435434,pos,ns,0.025350031,0.008871958,2.85732102,0.004561263,pos,ns,2.340914839,-0.000495761,0.000305106,-1.624880906,0.105204164,neg,ns,0.35544506,Gm17053,Gm17053_Intergenic_downstream,12,106528703,106528752,106528751,106528752,50,-,ACAGATGTAAGTGTTGGAGACTCGGCTCTGGCAGACCTCACGAAACCTCG,Distal Intergenic,12,106544837,106546326,1490,2,Gm17053-201,17623,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,6,108167962,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20538,cg26267081,-0.000036,0.00000917,-3.924121387,0.000107263,loss,ns,-0.0000459,0.0000156,-2.948484591,0.003436091,neg,ns,-0.006136001,0.004563768,-1.34450336,0.179768633,neg,ns,0.745286085,-0.000111953,0.000156948,-0.713317014,0.476186248,neg,ns,0.774142395,Fam181a,Fam181a_Intron,12,103314115,103314164,103314163,103314164,50,+,ATGGCAATTCTATGGGCTTTGTCCACCTCTTTCTCCATCATGACGACTCG,"Intron (Fam181a-203/Fam181a, intron 1 of 1)",12,103310975,103317065,6091,1,Fam181a-203,3140,Fam181a-203;Fam181a-202;Fam181a-201,Fam181a;Fam181a;Fam181a,0;-789;-795,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,9,100504156,ENSMUSG00000096753,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25686,cg18056481,0.000022,0.00000984,2.237478444,0.025965386,gain,ns,0.0000493,0.0000167,2.947591699,0.003445755,pos,ns,0.010803904,0.004896852,2.206295823,0.028096355,pos,ns,1.551350014,-0.000233997,0.000168402,-1.389513697,0.16567375,neg,ns,0.527256832,Gm28500,Gm28500_Intergenic_downstream,1,138385367,138385416,138385367,138385368,50,+,CGTATATCACACTGGTCATTAGTGGAGGATCATTCTGGACCTTTGCTCAC,Distal Intergenic,1,138377264,138377414,151,1,Gm28500-201,8103,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,105246716,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6513,cg17593845,-0.000034,0.00000967,-3.522197724,0.00049232,loss,ns,0.0000484,0.0000164,2.947231711,0.003449658,pos,ns,0.000260649,0.004810968,0.054178051,0.956828205,pos,ns,0.019166031,0.000212822,0.000165449,1.286332778,0.199286802,pos,ns,0.373889824,Siae,Siae_Intron,9,37568367,37568416,37568367,37568368,50,-,CGAGGGATTGAAGGCAACTAAAAATAGTGCATTAAATATAATCTGTTGAG,"Intron (Siae-202/Siae, intron 2 of 10)",9,37555698,37646987,91290,1,Siae-202,12669,Siae-202,Siae,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,5,22619,ENSMUSG00000001942,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
16983,cg02524931,0.00019789,0.0000321,6.157914239,2.28E-09,gain,yes,-0.000160844,0.0000546,-2.946155877,0.003461347,neg,ns,0.017066909,0.015994382,1.067056466,0.286776623,pos,ns,0.542456253,-0.000675002,0.000550045,-1.227174701,0.22068806,neg,ns,0.348071561,Kcnk12,Kcnk12_Exon,17,87746383,87746432,87746431,87746432,50,+,TGAAGAGGAAGTTGCCCAGGCGGTAGAGCCCCTGGTTCCGGTAGGCGGCG,"Exon (Kcnk12-201/Kcnk12, exon 2 of 2)",17,87745801,87797994,52194,2,Kcnk12-201,51562,Kcnk12-201,Kcnk12,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,210741,ENSMUSG00000050138,mapped to different genes,17,87746344,87746970,627,*,627,51,0.629984051,0.838499056,0.081339713,3.47E-34,CpGisland,TRUE,U3,Pr-B
9661,cg18622507,0.00000121,0.00000244,0.497196142,0.619403184,gain,ns,0.0000122,0.00000414,2.945378313,0.003469817,pos,ns,0.000087,0.00121363,0.071692472,0.942892877,pos,ns,0.025537645,0.0000044,0.0000417,0.105432466,0.916100842,pos,ns,0.953997051,Gm7476,Gm7476_Intergenic_downstream,12,49764753,49764802,49764753,49764754,50,+,CGATGTCATATAGATTTGAAAACGATGTTGTGCCAAGGAAGATGTTAATG,Distal Intergenic,12,49776115,49776775,661,2,Gm7476-201,11973,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,665071,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7405,cg09566653,-0.000000802,0.0000026,-0.308757537,0.757713364,loss,ns,-0.000013,0.00000441,-2.944578235,0.003478553,neg,ns,-0.001163942,0.001292193,-0.900749769,0.368420607,neg,ns,0.433656086,0.0000154,0.0000444,0.347537133,0.728423668,pos,ns,0.92271388,Tcerg1,Tcerg1_Exon,18,42552559,42552608,42552559,42552560,50,+,CGAGAAAGGGCCATTGTCCCTCTGGAGGCTCGAATGAAGCAGTTCAAGGA,"Exon (Tcerg1-209/Tcerg1, exon 13 of 22)",18,42511487,42575793,64307,1,Tcerg1-209,41072,Tcerg1-209;Tcerg1-203;Tcerg1-201;Tcerg1-202;Tcerg1-204;Tcerg1-205;Tcerg1-210;Tcerg1-206;Tcerg1-211,Tcerg1;Tcerg1;Tcerg1;Tcerg1;Tcerg1;Tcerg1;Tcerg1;Tcerg1;Tcerg1,0;0;0;0;0;16223;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,12,56070,ENSMUSG00000024498,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10817,cg22976006,-0.000021,0.00000438,-4.797453897,0.0000025,loss,ns,-0.0000219,0.00000745,-2.944199719,0.003482693,neg,ns,-0.006272198,0.002181408,-2.875297321,0.004315872,neg,ns,2.364931402,0.0000841,0.000075,1.12073314,0.263268931,pos,ns,0.736040352,Pck2,Pck2_Exon,14,55544477,55544526,55544477,55544478,50,+,CGGCAGCGGCTATGGTGGCAACTCCCTGCTGGGCAAGAAGTGCTTTGCCC,"Exon (Pck2-201/Pck2, exon 5 of 10)",14,55540266,55550017,9752,1,Pck2-201,4211,Pck2-201;Pck2-207;Pck2-205;Pck2-206;Pck2-210;Pck2-209;Pck2-203;Pck2-211;Pck2-213;Pck2-208;Pck2-212;Pck2-202;Pck2-204,Pck2;Pck2;Pck2;Pck2;Pck2;Pck2;Pck2;Pck2;Pck2;Pck2;Pck2;Pck2;Pck2,0;0;0;4087;0;0;4010;0;2072;0;907;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,74551,ENSMUSG00000040618,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25163,cg14652449,0.00000371,0.00000457,0.810901954,0.418044092,gain,ns,0.0000229,0.00000777,2.944173302,0.003482982,pos,ns,0.001601623,0.002275902,0.703731052,0.482128515,pos,ns,0.316837181,-0.000105619,0.0000783,-1.349447595,0.178177923,neg,ns,0.913913902,Gpr3,Gpr3_Exon,4,133211183,133211232,133211183,133211184,50,-,CGCATTCTCGCAGGACACCAGGGTGCCTGAGATGCAGAGCACCACATCCC,Promoter (<=1kb),4,133209340,133211857,2518,2,Gpr3-202,625,Cd164l2-204;Cd164l2-205;Cd164l2-206;Gpr3-202;Gpr3-201;Gpr3-203,Cd164l2;Cd164l2;Cd164l2;Gpr3;Gpr3;Gpr3,-899;-1143;-1674;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,3,14748,ENSMUSG00000049649,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
9100,cg09256063,-0.0000299,0.00000699,-4.27035828,0.000026,loss,ns,0.000035,0.0000119,2.94224179,0.003504179,pos,ns,0.000629532,0.0034806,0.18086875,0.856588788,pos,ns,0.067227615,-0.00000225,0.000119698,-0.018773646,0.985033755,neg,ns,0.822420087,Nova1,Nova1_Intergenic_upstream,12,46882304,46882353,46882352,46882353,50,+,ATTTCCTCTGAATGCTGCTGAATTCACACTTCACTAATGGCAAGGATCCG,Distal Intergenic,12,46694517,46818929,124413,2,Nova1-201,-63375,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,24,664883,ENSMUSG00000021047,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2959,cg26237529,-0.00000331,0.00000634,-0.522031538,0.602021176,loss,ns,0.0000317,0.0000108,2.941356119,0.003513938,pos,ns,0.002225064,0.003154071,0.705457876,0.481055087,pos,ns,0.317805189,-0.000217552,0.000108468,-2.005671508,0.045760009,neg,ns,0.806485712,Lrmda,Lrmda_Intron,14,22168192,22168241,22168192,22168193,50,-,CGTGAGAAGGGAAGATAAATTTTGTCCTAGTAATACTATAGCGACTCATA,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,148480,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206,Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14270,cg24657774,0.00000452,0.000012,0.375355092,0.707653092,gain,ns,-0.0000602,0.0000205,-2.941063531,0.003517167,neg,ns,0.007857034,0.005997274,1.310100882,0.191131641,pos,ns,0.71866741,-0.0000711,0.000206246,-0.344534967,0.730677617,neg,ns,0.524626948,Smg6,Smg6_Intron,11,75015510,75015559,75015510,75015511,50,-,CGTTCCTTGTTGTTACAGTCTGTGCAGTGCCCATCCTTGAGGGTGTTTTA,"Intron (Smg6-201/Smg6, intron 10 of 18)",11,74925823,75164448,238626,1,Smg6-201,89687,Smg6-201;Smg6-202;Smg6-204,Smg6;Smg6;Smg6,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,34,103677,ENSMUSG00000038290,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7672,cg25534230,-0.00000541,0.00000445,-1.216909235,0.22456438,loss,ns,-0.0000222,0.00000756,-2.940806382,0.003520008,neg,ns,0.00000498,0.002213854,0.002251195,0.998205256,pos,ns,0.000780148,-0.000169318,0.0000761,-2.223942127,0.026872551,neg,ns,0.903243363,Zbtb20,Zbtb20_Exon,16,43618690,43618739,43618738,43618739,50,-,TGACCAAATCGAGCAGTTCAACGACCACATGAGGATGCATGTGTCTGACG,"Exon (Zbtb20-204/Zbtb20, exon 15 of 15)",16,42907652,43642602,734951,1,Zbtb20-204,711038,Zbtb20-204;Zbtb20-201;Zbtb20-203;Zbtb20-202;Zbtb20-205,Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,17,98,56490,ENSMUSG00000022708,conserved gene and region,16,43618553,43618783,231,*,231,17,0.597402597,0.833404075,0.073593074,4.87E-11,CpGisland,TRUE,U11,Tr-P
24051,cg06678289,0.0000138,0.0000318,0.433468638,0.664975818,gain,ns,0.000158788,0.000054,2.940689256,0.003521302,pos,ns,-0.019320697,0.015819223,-1.221342965,0.222884212,neg,ns,0.651920694,0.001178245,0.000544022,2.165804311,0.031088293,pos,ns,0.201304603,Bcar3,Bcar3_Exon,3,122292978,122293027,122293026,122293027,50,-,TTGAATGCCTTCAGCCTCTAGAAGTCCAATGCGCTATCCATTGCGCCACG,Promoter (1-2kb),3,122294136,122427148,133013,1,Bcar3-202,-1158,Bcar3-202,Bcar3,-1109,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,8,29815,ENSMUSG00000028121,conserved gene and region,3,122292926,122294040,1115,*,1115,150,0.722869955,1.030721351,0.134529148,3.20E-135,CpGisland,TRUE,U1,Pr-A
12565,cg13783485,0.000133572,0.0000119,11.18584745,1.26E-24,gain,yes,-0.0000597,0.0000203,-2.940577831,0.003522534,neg,ns,0.018050647,0.00594325,3.037167683,0.002590997,pos,ns,2.586533039,-0.000236046,0.000204388,-1.154892747,0.249023792,neg,ns,0.545570826,Pappa,Pappa_Exon,4,65297391,65297440,65297391,65297392,50,-,CGACAACTTTGACCCCGTCACCCTGAGCAGCTGCCAGAGAGGGGAGACCT,"Exon (Pappa-201/Pappa, exon 13 of 22)",4,65124174,65357509,233336,1,Pappa-201,173217,Pappa-201,Pappa,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,5,18491,ENSMUSG00000028370,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9450,cg27537290,0.00000607,0.0000046,1.319221117,0.188068767,gain,ns,0.000023,0.00000782,2.939919271,0.003529823,pos,ns,0.00390785,0.00229085,1.705851608,0.089037324,pos,ns,1.050427902,0.0000041,0.0000788,0.052105279,0.958478366,pos,ns,0.075734995,Csmd3,Csmd3_Promoter,15,48791488,48791537,48791536,48791537,50,-,CATACTGCAAGAATATTTATTGAGCACAAGCTCAATCACCGCATTGAACG,Promoter (<=1kb),15,47580637,48791933,1211297,2,Csmd3-204,396,Csmd3-204;Csmd3-201;Csmd3-209;Csmd3-205;Csmd3-203,Csmd3;Csmd3;Csmd3;Csmd3;Csmd3,0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,4,16,239420,ENSMUSG00000022311,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
8017,cg24610046,-0.000032,0.00000587,-5.456180585,9.97E-08,loss,yes,-0.0000293,0.00000997,-2.939782992,0.003531333,neg,ns,-0.006049782,0.00291967,-2.072077748,0.039084723,neg,ns,1.407992957,-0.0000029,0.000100407,-0.028906433,0.976957815,neg,ns,0.86264744,Phldb1,Phldb1_Exon,9,44688641,44688690,44688689,44688690,50,-,GTAGTACACTTCCTCAATGGCCTGGAAATAGATGACTCCCTTCAGCTTCG,"Exon (Phldb1-214/Phldb1, exon 20 of 22)",9,44686304,44728100,41797,2,Phldb1-214,39410,Phldb1-214;Phldb1-213;Phldb1-218;Phldb1-207;Phldb1-212;Phldb1-201;Phldb1-211;Phldb1-215;Phldb1-210;Phldb1-208;Treh-201;Treh-203;Treh-202;Treh-204,Phldb1;Phldb1;Phldb1;Phldb1;Phldb1;Phldb1;Phldb1;Phldb1;Phldb1;Phldb1;Treh;Treh;Treh;Treh,0;0;0;0;0;0;0;0;0;0;15408;15406;15392;5345,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,102693,ENSMUSG00000048537,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2706,cg09979094,0.0000232,0.00000487,4.756749042,0.00000302,gain,ns,-0.0000243,0.00000828,-2.939560335,0.003533801,neg,ns,-0.002846247,0.002426217,-1.173121326,0.24164775,neg,ns,0.616817245,-0.0000309,0.0000834,-0.370631151,0.711165402,neg,ns,0.917464341,Dnm2,Dnm2_Exon,9,21480425,21480474,21480425,21480426,50,+,CGACATGGCCTTTGAAGCCATTGTGAAAAAACAGATTGTAAAACTCAAAG,"Exon (Dnm2-211/Dnm2, exon 10 of 21)",9,21424908,21507754,82847,1,Dnm2-204,55517,Dnm2-204;Dnm2-211;Dnm2-201;Dnm2-202;Dnm2-203;Dnm2-206;Dnm2-205;Dnm2-212;Dnm2-208;Dnm2-207,Dnm2;Dnm2;Dnm2;Dnm2;Dnm2;Dnm2;Dnm2;Dnm2;Dnm2;Dnm2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,13430,ENSMUSG00000033335,conserved gene and region,9,21480323,21480521,199,*,199,11,0.567839196,0.68836478,0.055276382,0.00000442,CpGisland,TRUE,U10,Tr-S
4386,cg09751652,0.00000758,0.00000757,1.001268423,0.317477964,gain,ns,0.0000378,0.0000129,2.939103895,0.003538867,pos,ns,-0.001289605,0.0037689,-0.342170193,0.732454677,neg,ns,0.135219244,-0.0000217,0.000129612,-0.167567341,0.867032925,neg,ns,0.813386058,Unc5d,Unc5d_Exon,8,28675279,28675328,28675327,28675328,50,-,AGGATTGATGTCTGCACTTGGAGGATCTGTTCATGGCCTTTGAGCTGCCG,"Exon (Unc5d-201/Unc5d, exon 16 of 18)",8,28646717,29219636,572920,2,Unc5d-201,544308,Unc5d-201;Unc5d-204;Unc5d-202;Unc5d-203;Unc5d-205,Unc5d;Unc5d;Unc5d;Unc5d;Unc5d,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,11,210801,ENSMUSG00000063626,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25874,cg24714722,0.0000743,0.00000854,8.698507516,2.01E-16,gain,yes,0.0000426,0.0000145,2.937832247,0.003553013,pos,ns,0.021505071,0.004250012,5.060002964,0.00000072,pos,ns,6.142871246,-0.000288963,0.000146158,-1.977066196,0.048919904,neg,ns,0.467595836,Morc4,Morc4_fiveUTR,X,139871102,139871151,139871150,139871151,50,-,GTGTGGCTGCTGGAGTTGCTCTGGAGGTAGCGGGGGCTCATCTGGGGGCG,Promoter (<=1kb),20,139821632,139871654,50023,2,Morc4-201,503,Morc4-201;Morc4-202;Morc4-205;Morc4-203;Morc4-206;Morc4-209;Morc4-207,Morc4;Morc4;Morc4;Morc4;Morc4;Morc4;Morc4,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,7,75746,ENSMUSG00000031434,conserved gene but different region,X,139870932,139871804,873,*,873,89,0.718213058,0.792745638,0.101947308,2.45E-68,CpGisland,TRUE,U1,Pr-A
21324,cg08778443,-0.00000322,0.00000355,-0.9064752,0.365388422,loss,ns,-0.0000177,0.00000603,-2.937597482,0.00355563,neg,ns,-0.003753983,0.001766915,-2.124597825,0.034411226,neg,ns,1.463299855,0.000047,0.0000608,0.772811337,0.440222867,pos,ns,0.905588102,Nfat5,Nfat5_threeUTR,8,107339171,107339220,107339219,107339220,50,+,ACCAGTTCCTACAATGATAACACTGAGGTACCTCGTAAATCACGAAAACG,3' UTR,8,107293470,107372227,78758,1,Nfat5-213,45701,Nfat5-213;Nfat5-214;Nfat5-206;Nfat5-211;Nfat5-203;Nfat5-201;Nfat5-209;Nfat5-205;Nfat5-202;Nfat5-207,Nfat5;Nfat5;Nfat5;Nfat5;Nfat5;Nfat5;Nfat5;Nfat5;Nfat5;Nfat5,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,13,17,54446,ENSMUSG00000003847,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4702,cg09837009,0.000105587,0.00000785,13.45290275,8.25E-33,gain,yes,-0.0000392,0.0000133,-2.93749328,0.003556793,neg,ns,0.015170937,0.003906343,3.883667083,0.000125793,pos,ns,3.900342225,-0.000371438,0.000134339,-2.764935403,0.006034476,neg,ns,0.816313603,Cacna1d,Cacna1d_Exon,14,30171340,30171389,30171388,30171389,50,-,AAGGATGATCAGACTAACAAAATACACCCATGGCCATTCCCATCCTATCG,"Exon (Cacna1d-202/Cacna1d, exon 8 of 47)",14,30039941,30491453,451513,2,Cacna1d-202,320064,Cacna1d-202;Cacna1d-201;Cacna1d-208;Cacna1d-209;Cacna1d-214;Cacna1d-204;Cacna1d-207;Cacna1d-218;Cacna1d-216;Cacna1d-206,Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,26,12289,ENSMUSG00000015968,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2698,cg27647617,0.00000231,0.00000273,0.846181577,0.398104158,gain,ns,-0.0000136,0.00000463,-2.937143597,0.003560696,neg,ns,-0.002552196,0.001357677,-1.879826121,0.061069466,neg,ns,1.21417588,0.0000772,0.0000467,1.653274564,0.099287284,pos,ns,0.916911886,Ilf3,Ilf3_threeUTR,9,21400561,21400610,21400609,21400610,50,+,ACCCAAAGTGTCCGTGCTGTGTCCCTGTGCTTCACTGGGTTTCTCAACCG,3' UTR,9,21367871,21405360,37490,1,Ilf3-201,32690,Ilf3-201;Ilf3-203;Ilf3-206;Ilf3-213;Ilf3-202;Ilf3-204;Ilf3-208;Ilf3-216;Ilf3-211;Ilf3-214;Ilf3-212;Ilf3-205,Ilf3;Ilf3;Ilf3;Ilf3;Ilf3;Ilf3;Ilf3;Ilf3;Ilf3;Ilf3;Ilf3;Ilf3,0;0;0;0;0;0;0;0;0;0;0;-3023,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,5,11,16201,ENSMUSG00000032178,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16116,cg14427009,0.0000443,0.0000339,1.305328413,0.192749021,gain,ns,-0.000169024,0.0000576,-2.93437931,0.003591687,neg,ns,0.04003875,0.016875189,2.37264006,0.018271383,pos,ns,1.73822857,-0.002355121,0.000580336,-4.058199397,0.0000627,neg,ns,0.243180561,Pcdh17,Pcdh17_Exon,14,84446427,84446476,84446475,84446476,50,+,CAACGACAAGGAGATCTGCATGATCAAGGTAGAGATCCAGGACATCAACG,"Exon (Pcdh17-201/Pcdh17, exon 1 of 4)",14,84443563,84539002,95440,1,Pcdh17-201,2864,Pcdh17-201;Pcdh17-202,Pcdh17;Pcdh17,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,13,219228,ENSMUSG00000035566,conserved gene and region,14,84446475,84446662,188,*,188,21,0.638297872,1.159811986,0.111702128,2.17E-17,CpGisland,TRUE,U3,Pr-B
389,cg02632558,-0.00000339,0.00000183,-1.852205194,0.064946875,loss,ns,0.00000911,0.00000311,2.934236157,0.003593298,pos,ns,0.002425682,0.000909851,2.666019966,0.008077995,pos,ns,2.092696429,-0.0000542,0.0000313,-1.731521282,0.084353688,neg,ns,0.952673346,Zfhx4,Zfhx4_Intron,3,5349929,5349978,5349977,5349978,50,-,AATCAGTCTGGACCACGTTATGAATAATTTAGGGATCAGCAGACTTCACG,"Intron (Zfhx4-203/Zfhx4, intron 4 of 10)",3,5218526,5413165,194640,1,Zfhx4-203,131403,Zfhx4-203;Zfhx4-201;Zfhx4-205,Zfhx4;Zfhx4;Zfhx4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,27,77,80892,ENSMUSG00000025255,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24497,cg15027358,0.0000333,0.0000217,1.538088783,0.125046954,gain,ns,0.000108061,0.0000368,2.933930902,0.003596737,pos,ns,0.008964818,0.010790342,0.830818688,0.406715483,pos,ns,0.390709294,0.000158735,0.000371079,0.427766088,0.669118435,pos,ns,0.459021208,Kcna1,Kcna1_Exon,6,126642388,126642437,126642436,126642437,50,-,ATACTAGCTTTGAGGGTCTGGCCCAGGATCTGGAGGCCCTTAGAGTGGCG,"Exon (Kcna1-201/Kcna1, exon 2 of 2)",6,126640397,126644796,4400,2,Kcna1-201,2359,Kcna1-201;Kcna1-202;Kcna1-203,Kcna1;Kcna1;Kcna1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,12,16485,ENSMUSG00000047976,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
24417,cg06184939,-0.0000136,0.0000114,-1.185724011,0.236639367,loss,ns,0.000057,0.0000194,2.933721932,0.003599093,pos,ns,0.010211205,0.005692028,1.793948391,0.073795811,pos,ns,1.131968292,-0.00076135,0.000195748,-3.889429382,0.00012298,neg,ns,0.616849214,Grik3,Grik3_Intron,4,125545186,125545235,125545186,125545187,50,+,CGAGGGTGAAAACATTTCACTGTGTCAATGAACATACTTAATTTTTCTGG,"Intron (Grik3-201/Grik3, intron 1 of 15)",4,125490700,125714173,223474,1,Grik3-201,54486,Grik3-201,Grik3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,14,18,14807,ENSMUSG00000001985,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11039,cg22246605,-0.00000635,0.00000433,-1.46459844,0.14404388,loss,ns,0.0000216,0.00000736,2.933187983,0.003605119,pos,ns,0.006248101,0.002156805,2.8969248,0.004036609,pos,ns,2.393983281,-0.000163161,0.0000742,-2.199757674,0.02856189,neg,ns,0.910732824,Gm13518,Gm13518_Intergenic_downstream,2,56399651,56399700,56399699,56399700,50,+,TCAAGTGAAGCAGTTAATATTAGTATAATCATCAAACTAACACTAGTCCG,Distal Intergenic,2,56039853,56040085,233,1,Gm13518-201,359798,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,37,37,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18733,cg01614688,0.0000296,0.0000062,4.777446368,0.00000274,gain,ns,-0.0000309,0.0000105,-2.932577425,0.003612021,neg,ns,-0.001364002,0.003083744,-0.442320079,0.658566041,neg,ns,0.181400668,-0.0000274,0.00010605,-0.258051002,0.796538775,neg,ns,0.811446151,Sp6,Sp6_Intergenic_upstream,11,97001340,97001389,97001388,97001389,50,+,TCTGGTGCCGTGTGTGGTTTCAGGATAAGCTGCCGATGCCACCCAGAGCG,Distal Intergenic,11,97013394,97024734,11341,1,Sp6-201,-12005,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,83395,ENSMUSG00000038560,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4823,cg03904834,-0.0000333,0.0000124,-2.680413893,0.007746326,loss,ns,0.000062,0.0000211,2.932517343,0.0036127,pos,ns,0.000620834,0.006190103,0.100294634,0.920175248,pos,ns,0.036129453,0.0000306,0.000212877,0.143882007,0.885687131,pos,ns,0.819770384,Gm11920,Gm11920_Intergenic_upstream,4,30855465,30855514,30855513,30855514,50,-,AATTATCCAGATTCCAAGGCAATCATACAACCGTAATCATTCACCTCACG,Distal Intergenic,4,30701973,30702535,563,2,Gm11920-201,-152979,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,619906,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14347,cg23630423,0.0000802,0.0000305,2.629928098,0.008966495,gain,ns,-0.000151855,0.0000518,-2.931897252,0.003619724,neg,ns,-0.028671281,0.015173923,-1.889510203,0.059756472,neg,ns,1.223615049,-0.001664869,0.00052183,-3.19044358,0.001566006,neg,ns,0.441233251,Rtn4rl1,Rtn4rl1_Intron,11,75212519,75212568,75212567,75212568,50,+,CCTCTCTTTAAATAGGAGCAGGGCTGGAGGCTGCAGCTCTTCCCCAGCCG,"Intron (Rtn4rl1-201/Rtn4rl1, intron 1 of 1)",11,75193783,75267769,73987,1,Rtn4rl1-201,18736,Rtn4rl1-201,Rtn4rl1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,3,237847,ENSMUSG00000045287,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
19039,cg17332426,-0.00000981,0.00000392,-2.500067131,0.012933356,loss,ns,-0.0000195,0.00000666,-2.931429497,0.00362503,neg,ns,0.000795747,0.001952602,0.40753159,0.68389888,pos,ns,0.165008107,-0.0000905,0.0000671,-1.348203011,0.178577348,neg,ns,0.894258988,Cdk12,Cdk12_Intron,11,98266043,98266092,98266091,98266092,50,-,CCCAGCACCCCGAGCAGAGCAGCAGTGCAGATTAAAATCTCCAATTAGCG,"Intron (Cdk12-206/Cdk12, intron 6 of 7)",11,98241737,98278504,36768,1,Cdk12-206,24306,Cdk12-206;Cdk12-204,Cdk12;Cdk12,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,25,69131,ENSMUSG00000003119,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5034,cg14803181,-0.0000214,0.0000115,-1.863355178,0.063357757,loss,ns,0.0000572,0.0000195,2.930506387,0.003635522,pos,ns,0.005548787,0.005713962,0.971092766,0.33225916,pos,ns,0.478523037,-0.0000646,0.000196503,-0.328572284,0.742700839,neg,ns,0.790664284,Map3k7,Map3k7_Intergenic_upstream,4,31909366,31909415,31909414,31909415,50,+,ATGTTTTTCCTGTTTTGACAGGTAGTTGTAATTCTATTAGCAGCCCATCG,Distal Intergenic,4,31964097,32023467,59371,1,Map3k7-201,-54682,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,4,26409,ENSMUSG00000028284,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18372,cg02188429,0.000000136,0.00000816,0.016701125,0.986685793,gain,ns,0.0000406,0.0000139,2.929721651,0.003644463,pos,ns,0.006561749,0.004063586,1.61476811,0.107378236,pos,ns,0.969083735,-0.000234557,0.000139746,-1.67844804,0.094267382,neg,ns,0.227484374,Otp,Otp_Intron,13,94880272,94880321,94880320,94880321,50,-,TTCCTCTCCCAGCACTATTAAACTGTAATGAATTCGGCCCAGAGTTCACG,"Intron (Otp-201/Otp, intron 2 of 2)",13,94875602,94885130,9529,1,Otp-201,4670,Otp-201;Otp-202,Otp;Otp,0;-2279,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,34,18420,ENSMUSG00000021685,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
10086,cg06045699,0.000230961,0.0000156,14.83496641,5.41E-38,gain,yes,-0.0000775,0.0000264,-2.929686503,0.003644864,neg,ns,0.027130796,0.007748704,3.501333271,0.000530915,pos,ns,3.27497467,-0.000606636,0.000266477,-2.276502042,0.023497477,neg,ns,0.301980847,Hoxa2,Hoxa2_fiveUTR,6,52164814,52164863,52164814,52164815,50,+,CGCTACTATTAAACTATTGAATTCATGGAGACAAGGTTGAAATTGGACCG,Promoter (<=1kb),6,52162417,52164831,2415,2,Hoxa2-201,0,Gm28308-201;Hoxa2-201;Hoxa3-201,Gm28308;Hoxa2;Hoxa3,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,3,15399,ENSMUSG00000014704,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27394,cg21839212,-0.000046,0.00000884,-5.207442576,0.00000035,loss,yes,-0.000044,0.000015,-2.929038701,0.003652261,neg,ns,-0.011161572,0.004401227,-2.53601355,0.011702993,neg,ns,1.931703049,0.0000135,0.000151358,0.088963856,0.929168081,pos,ns,0.840958671,Ncoa3,Ncoa3_Intron,2,166010424,166010473,166010472,166010473,50,-,TGTCAGCCTGTGAAATTTTCCACTATTTCCCATAATAACATGCAGGCACG,"Intron (Ncoa3-202/Ncoa3, intron 1 of 22)",2,165992636,166071470,78835,1,Ncoa3-202,17788,Ncoa3-202;Ncoa3-201,Ncoa3;Ncoa3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,17979,ENSMUSG00000027678,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16921,cg12087132,-0.000000244,0.00000168,-0.145424117,0.884470533,loss,ns,0.00000836,0.00000285,2.92869228,0.003656222,pos,ns,0.001876594,0.000836274,2.243995727,0.025538187,pos,ns,1.59280994,-0.0000174,0.0000288,-0.604588131,0.545894941,neg,ns,0.957197415,Gm9540,Gm9540_Intergenic_downstream,9,87411251,87411300,87411299,87411300,50,+,TGACTTTTAAGTAACATTTTATTGAAGTAACTGCCGTGCTTATTAGCCCG,Distal Intergenic,9,87394250,87394727,478,1,Gm9540-201,17001,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,7,671706,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3231,cg10879164,0.0000609,0.00000498,12.24529961,2.18E-28,gain,yes,-0.0000248,0.00000845,-2.928544423,0.003657914,neg,ns,0.008456811,0.002476618,3.414660738,0.000723616,pos,ns,3.140491722,-0.00017475,0.0000852,-2.051756134,0.041033157,neg,ns,0.896415032,Xpo1,Xpo1_Exon,11,23284245,23284294,23284245,23284246,50,-,CGTTTATTAATGGTTAGTCGAATGGCTAAACCAGAGGAAGTATTGGTTGT,"Exon (Xpo1-201/Xpo1, exon 14 of 26)",11,23256041,23297597,41557,1,Xpo1-201,28204,Xpo1-201;Xpo1-204;Xpo1-203;Xpo1-206;Xpo1-202;Xpo1-207,Xpo1;Xpo1;Xpo1;Xpo1;Xpo1;Xpo1,0;0;0;0;0;-350,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,14,103573,ENSMUSG00000020290,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8177,cg23263602,-0.00000309,0.00000256,-1.204741069,0.229222204,loss,ns,0.0000127,0.00000435,2.928459394,0.003658887,pos,ns,0.003167113,0.001274561,2.484865129,0.013487394,pos,ns,1.870071943,-0.0000792,0.0000438,-1.807047966,0.071724221,neg,ns,0.941476886,Zcchc7,Zcchc7_Intron,4,44830584,44830633,44830632,44830633,50,+,GAATGAAGGCTAATTACCTCAAGATCAGAACAAAATAACTCCTCATTTCG,"Intron (Zcchc7-203/Zcchc7, intron 2 of 8)",4,44756568,44932203,175636,1,Zcchc7-203,74016,Zcchc7-203;Zcchc7-207;Zcchc7-205;Zcchc7-201,Zcchc7;Zcchc7;Zcchc7;Zcchc7,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,27,27,319885,ENSMUSG00000035649,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18808,cg10313530,0.0000986,0.0000106,9.316802229,2.31E-18,gain,yes,-0.0000526,0.000018,-2.928100292,0.003663,neg,ns,-0.006755993,0.005265131,-1.283157705,0.200395274,neg,ns,0.698112525,0.0000287,0.000181067,0.158331614,0.874298588,pos,ns,0.179141383,Gk2,Gk2_Intron,5,97538011,97538060,97538059,97538060,50,+,GTAATTTGCTTAATGGCTGCCCAGAGTACAGATTATAGCAATCAGTCACG,"Intron (4930467D21Rik-202/4930467D21Rik-202, intron 3 of 4)",5,97455142,97457021,1880,2,Gk2-201,-80990,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,13,14626,ENSMUSG00000050553,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17519,cg05549181,0.00000829,0.00000208,3.993971082,0.0000812,gain,ns,-0.0000103,0.00000353,-2.928064786,0.003663407,neg,ns,-0.000510659,0.001033356,-0.49417533,0.621532344,neg,ns,0.206536266,0.0000126,0.0000355,0.355003235,0.722828568,pos,ns,0.930624856,Nup160,Nup160_Exon,2,90693863,90693912,90693863,90693864,50,-,CGGATATCTGGGCCCTGTGGCATGATGCTGAGAACCAAACAGTAGTGAAA,"Exon (Nup160-201/Nup160, exon 10 of 37)",2,90677215,90736328,59114,1,Nup160-201,16648,Nup160-201;Nup160-207;Nup160-206;Nup160-205,Nup160;Nup160;Nup160;Nup160,0;8692;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,59015,ENSMUSG00000051329,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8274,cg07016010,-0.00000116,0.00000303,-0.382457532,0.7023841,loss,ns,0.0000151,0.00000515,2.927979934,0.00366438,pos,ns,0.005635046,0.001509233,3.733714376,0.000224461,pos,ns,3.648858484,-0.000139866,0.0000519,-2.694791418,0.007427327,neg,ns,0.910576308,Zcchc7,Zcchc7_Intron,4,44918081,44918130,44918129,44918130,50,+,CCCCCCAAAAAAAATGAGTTGTGTTATCTGGATGGCTGCAGACACATACG,"Intron (Zcchc7-203/Zcchc7, intron 6 of 8)",4,44756568,44932203,175636,1,Zcchc7-203,161513,Zcchc7-203;Zcchc7-202;Zcchc7-208,Zcchc7;Zcchc7;Zcchc7,0;0;-4988,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,27,27,319885,ENSMUSG00000035649,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19092,cg16023422,0.0000207,0.00000316,6.545602397,2.45E-10,gain,yes,0.0000157,0.00000536,2.927861562,0.003665737,pos,ns,0.002831003,0.001570493,1.802620862,0.072418909,pos,ns,1.140148021,0.0000433,0.000054,0.801738519,0.423318355,pos,ns,0.032405141,Ppp1r1b,Ppp1r1b_Promoter,11,98339314,98339363,98339362,98339363,50,-,TGCATAAAATTTTAATGGTCTCTCTGGCTGATCCGGGACGGCAGCGCGCG,Promoter (9-10kb),11,98348404,98357796,9393,1,Ppp1r1b-201,-9090,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,16,16,19049,ENSMUSG00000061718,conserved gene and region,11,98339347,98339463,117,*,117,11,0.717948718,0.783323189,0.094017094,2.09E-08,CpGisland,TRUE,U3,Pr-B
27139,cg24250921,-0.0000238,0.00000752,-3.170773196,0.001672384,loss,ns,0.0000374,0.0000128,2.927570422,0.003669077,pos,ns,0.010202514,0.003741989,2.726494548,0.00676538,pos,ns,2.169707818,-0.000348943,0.000128687,-2.711567117,0.007070119,neg,ns,0.844851655,Gm14219,Gm14219_Intergenic_downstream,2,159186053,159186102,159186053,159186054,50,+,CGTTCCCTGTGATTAAATTAGTGTAAGTAATAAGATATCATAGATTTGAT,Distal Intergenic,2,159456170,159456457,288,2,Gm14219-201,270355,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,5,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9713,cg18877697,-0.00000507,0.00000346,-1.463485461,0.14434779,loss,ns,0.0000172,0.00000588,2.927156419,0.003673832,pos,ns,0.000935744,0.001723521,0.54292599,0.587570897,pos,ns,0.230939723,0.000018,0.0000593,0.303158575,0.761972359,pos,ns,0.947125379,Sorcs1,Sorcs1_threeUTR,19,50189997,50190046,50190045,50190046,50,+,AAACCAACAACAGTAATAACATACAAGTTACATGTAAGTACAGGACGGCG,3' UTR,19,50143299,50678646,535348,2,Sorcs1-205,488600,Sorcs1-205;Sorcs1-201;Sorcs1-208;Sorcs1-203;Sorcs1-204;Sorcs1-202;Sorcs1-207;Sorcs1-206,Sorcs1;Sorcs1;Sorcs1;Sorcs1;Sorcs1;Sorcs1;Sorcs1;Sorcs1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,5,8,58178,ENSMUSG00000043531,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19451,cg13185781,-0.00000858,0.000011,-0.783295875,0.434051391,loss,ns,0.0000545,0.0000186,2.926772724,0.003678243,pos,ns,0.001446471,0.005451941,0.265313144,0.790944579,pos,ns,0.101853946,-0.00020499,0.000187492,-1.093325912,0.27509959,neg,ns,0.274724446,Cdh8,Cdh8_Intron,8,99338358,99338407,99338406,99338407,50,+,ACCTACAGTCTATCTGATTGTTCCCTTCAAGGAAGCCAGAAAGAATGTCG,"Intron (Cdh8-207/Cdh8, intron 2 of 12)",8,99024471,99416427,391957,2,Cdh8-207,78020,Cdh8-207;Cdh8-204;Cdh8-201;Cdh8-206;Cdh8-203;Cdh8-205,Cdh8;Cdh8;Cdh8;Cdh8;Cdh8;Cdh8,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,16,12564,ENSMUSG00000036510,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24150,cg16900594,0.00000272,0.00000167,1.629126312,0.104302003,gain,ns,-0.0000083,0.00000284,-2.926459266,0.00368185,neg,ns,0.001263959,0.000831379,1.520315806,0.129450894,pos,ns,0.887894947,-0.0000582,0.0000286,-2.034158618,0.042786632,neg,ns,0.013493036,Mycl,Mycl_Exon,4,122996600,122996649,122996600,122996601,50,-,CGAGGACATCTGGAAGAAATTCGAGCTGGTGCCATCGCCCCCCACGTCGC,Promoter (<=1kb),4,122995652,122996739,1088,1,Mycl-204,948,Mycl-204;Mycl-202;Mycl-201;Mycl-203;Mycl-205,Mycl;Mycl;Mycl;Mycl;Mycl,0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,4,16918,ENSMUSG00000028654,conserved gene and region,4,122996386,122997032,647,*,647,60,0.678516229,0.806063123,0.092735703,1.21E-43,CpGisland,TRUE,U3,Pr-B
15889,cg26024182,-0.0000178,0.00000548,-3.252515251,0.001269993,loss,ns,0.0000272,0.00000931,2.926161196,0.003685284,pos,ns,0.003783657,0.002727155,1.38740097,0.166316088,pos,ns,0.779065739,-0.000102532,0.0000938,-1.093250019,0.275132848,neg,ns,0.596946615,Gm6411,Gm6411_Intron,13,83749914,83749963,83749962,83749963,50,+,ATGTCTGCTGGCACACATCGCTGGATTTGTGTGTCACTAAACAATGAGCG,"Intron (C130071C03Rik-204/C130071C03Rik-204, intron 3 of 3)",13,83761132,83762335,1204,2,Gm6411-201,12372,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,36,623241,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7162,cg08945781,0.000116957,0.000021,5.578875873,5.28E-08,gain,yes,-0.000104215,0.0000356,-2.926111224,0.00368586,neg,ns,0.032688851,0.010434103,3.132885592,0.001896335,pos,ns,2.722084858,-0.000610797,0.000358828,-1.702199547,0.08972046,neg,ns,0.61823959,Lcor,Lcor_fiveUTR,19,41552465,41552514,41552465,41552466,50,+,CGACCCCAATATTCCCCTAGTGGCCCGTGAGATCATGCAGCGAATGATCC,5' UTR,19,41482637,41562261,79625,1,Lcor-201,69828,Lcor-201;Lcor-204;Lcor-206;Lcor-202;Lcor-205,Lcor;Lcor;Lcor;Lcor;Lcor,0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,25,212391,ENSMUSG00000025019,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17187,cg23094811,0.000012,0.00000758,1.576496413,0.115931348,gain,ns,0.0000377,0.0000129,2.925663267,0.003691026,pos,ns,-0.001045259,0.003774294,-0.276941564,0.782009546,neg,ns,0.106787945,0.0000902,0.000129798,0.694844751,0.487673058,pos,ns,0.85100226,Ano4,Ano4_threeUTR,10,89084568,89084617,89084568,89084569,50,-,CGGGGCAGGTAATAGATTTTTCTCCTGGAAGAACAGCAAAAATGAAGCCA,3' UTR,10,88948994,89257790,308797,2,Ano4-206,173173,Ano4-206;Ano4-204;Ano4-208;Ano4-210;Ano4-203;Ano4-205;Ano4-212;Ano4-202;Ano4-209,Ano4;Ano4;Ano4;Ano4;Ano4;Ano4;Ano4;Ano4;Ano4,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,8,9,320091,ENSMUSG00000035189,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1171,cg00301226,-0.00000158,0.00000307,-0.516473413,0.605892027,loss,ns,0.0000152,0.00000521,2.924458577,0.003704952,pos,ns,0.006518539,0.001525722,4.272427753,0.0000258,pos,ns,4.589150037,-0.000144388,0.0000525,-2.751852861,0.006274785,neg,ns,0.902074072,Gm14512,Gm14512_Intergenic_downstream,X,11989524,11989573,11989572,11989573,50,+,TTGGCATCCCTGGCTCGAATATGAAATTATTACACAAGAATTGACTCTCG,Distal Intergenic,20,11984468,11984697,230,1,Gm14512-201,5056,Gm14512-201,Gm14512,5056,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,22,22,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20013,cg25172570,-0.00000381,0.00000395,-0.965813793,0.334890203,loss,ns,0.0000196,0.0000067,2.923940768,0.003710952,pos,ns,0.006085906,0.001963552,3.099437734,0.002116719,pos,ns,2.674336847,-0.000122736,0.0000675,-1.817606589,0.070089521,neg,ns,0.941114526,Nup98,Nup98_Exon,7,102180389,102180438,102180437,102180438,50,-,TGTTTGTATTGGTTCCTAAAGTCAGGGTTGGTTTGTTACCAAAGAGCCCG,"Exon (Nup98-203/Nup98, exon 10 of 33)",7,102119398,102210176,90779,2,Nup98-203,29738,Nup98-203;Nup98-201;Nup98-206;Nup98-204;Nup98-205;Nup98-208;Nup98-202,Nup98;Nup98;Nup98;Nup98;Nup98;Nup98;Nup98,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,269966,ENSMUSG00000063550,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19739,cg10637076,-0.0000102,0.00000445,-2.294233085,0.022445447,loss,ns,-0.0000221,0.00000757,-2.923934637,0.003711023,neg,ns,-0.002541666,0.002216744,-1.146576112,0.252441072,neg,ns,0.597839984,-0.0000412,0.0000762,-0.540071192,0.589535695,neg,ns,0.95196175,Cachd1,Cachd1_Exon,4,100974898,100974947,100974898,100974899,50,+,CGTCCTCAGAATTTATCCTGGTTCCCTCATGGACAAAGCATTTGATCCCA,"Exon (Cachd1-201/Cachd1, exon 15 of 27)",4,100776675,101004544,227870,1,Cachd1-201,198223,Cachd1-201;Cachd1-202,Cachd1;Cachd1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,5,320508,ENSMUSG00000028532,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5452,cg24576158,0.0000692,0.0000102,6.768733952,6.51E-11,gain,yes,-0.0000508,0.0000174,-2.923445812,0.003716696,neg,ns,0.010036419,0.00509159,1.971175682,0.04959296,pos,ns,1.304579971,-0.000498095,0.000175099,-2.844643433,0.004741887,neg,ns,0.464275449,Mvb12b,Mvb12b_Intergenic_upstream,2,33983427,33983476,33983475,33983476,50,+,AACCTGGCTAAGGCAATTACCTCTGCATAAATGCATATATTATTCATCCG,Distal Intergenic,2,33729953,33887946,157994,2,Mvb12b-201,-95481,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,16,47,72543,ENSMUSG00000038740,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8336,cg14807945,0.0000175,0.0000105,1.659115953,0.098103745,gain,ns,-0.0000523,0.0000179,-2.923361991,0.003717669,neg,ns,-0.005757465,0.005244302,-1.09785155,0.273121305,neg,ns,0.563644421,0.000570424,0.000180351,3.162850012,0.00171709,pos,ns,0.376667678,Zeb2,Zeb2_Intron,2,45024643,45024692,45024691,45024692,50,-,CACTTGCCTTCCGAACAACTGCACAACAGGTGCAAATTAAAATGAAAACG,"Intron (Zeb2-212/Zeb2, intron 3 of 10)",2,44983632,45117395,133764,2,Zeb2-212,92703,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-227;Zeb2-216;Zeb2-229;Zeb2-218;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25994,cg17464264,0.00000128,0.00000543,0.236623679,0.813105025,gain,ns,-0.0000269,0.00000922,-2.92292833,0.00372271,neg,ns,0.00580827,0.002701138,2.150304852,0.032304219,pos,ns,1.490740753,-0.00034819,0.0000929,-3.748340649,0.000212307,neg,ns,0.713160039,Tmem164,Tmem164_Exon,X,142834298,142834347,142834298,142834299,50,-,CGGGAAGCTGGTCATCCTGTTCTCATACATGGCTGGGCCCTTGTGTAAAT,"Exon (Tmem164-204/Tmem164, exon 6 of 7)",20,142681406,142843494,162089,1,Tmem164-204,152892,Tmem164-204;Tmem164-202;Tmem164-205;Tmem164-201;Tmem164-206;Tmem164-208;Tmem164-209;Tmem164-203,Tmem164;Tmem164;Tmem164;Tmem164;Tmem164;Tmem164;Tmem164;Tmem164,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,15,209497,ENSMUSG00000047045,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8249,cg24982465,-0.0000359,0.0000115,-3.124344049,0.001950506,loss,ns,-0.000057,0.0000195,-2.922773065,0.003724516,neg,ns,0.011191529,0.005717366,1.957462412,0.051190135,pos,ns,1.290813724,-0.000654615,0.00019662,-3.329344018,0.000975521,neg,ns,0.733797658,Jarid2,Jarid2_Exon,13,44902458,44902507,44902506,44902507,50,+,AAAGTAGCAATGCAAAAACCCGCAAACAGGTGCTATCCCTCGGGGGGGCG,"Exon (Jarid2-210/Jarid2, exon 8 of 19)",13,44730774,44920108,189335,1,Jarid2-210,171684,Jarid2-210;Jarid2-201;Jarid2-209;Jarid2-208;Jarid2-216;Jarid2-211,Jarid2;Jarid2;Jarid2;Jarid2;Jarid2;Jarid2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,21,16468,ENSMUSG00000038518,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10882,cg20939616,0.0000141,0.00000328,4.289270251,0.000024,gain,ns,-0.0000163,0.00000558,-2.922483641,0.003727885,neg,ns,-0.001660079,0.001634645,-1.015559315,0.31063124,neg,ns,0.507754869,-0.0000548,0.0000562,-0.97478755,0.330425683,neg,ns,0.936010323,Ralgapa1,Ralgapa1_Exon,12,55722782,55722831,55722782,55722783,50,+,CGTTCAACAGTGAATGGTTCCAAGATGTCAGAAGTGCTGCTACTTCGAGG,"Exon (Ralgapa1-211/Ralgapa1, exon 17 of 40)",12,55602896,55820767,217872,2,Ralgapa1-211,97936,Ralgapa1-211;Ralgapa1-212;Ralgapa1-201;Ralgapa1-202;Ralgapa1-204;Ralgapa1-207;Ralgapa1-208,Ralgapa1;Ralgapa1;Ralgapa1;Ralgapa1;Ralgapa1;Ralgapa1;Ralgapa1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,15,56784,ENSMUSG00000021027,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21952,cg07055193,-0.00000291,0.00000527,-0.551067975,0.581984016,loss,ns,0.0000262,0.00000896,2.922448017,0.0037283,pos,ns,0.009011805,0.002623875,3.43453995,0.000674377,pos,ns,3.171097206,-0.000178144,0.0000902,-1.974230055,0.049242996,neg,ns,0.886884663,Faf1,Faf1_Intron,4,109806391,109806440,109806439,109806440,50,+,ATATCAAACCTCACGGGGGTTTGACAGGCAACGAATATCGTTATTAGACG,"Intron (Faf1-201/Faf1, intron 8 of 18)",4,109676588,109963960,287373,1,Faf1-201,129803,Faf1-201,Faf1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,24,14084,ENSMUSG00000010517,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15442,cg01895513,-0.000000718,0.0000129,-0.055820802,0.955520523,loss,ns,0.0000638,0.0000219,2.921244571,0.00374234,pos,ns,0.015334209,0.006403042,2.394832079,0.017221402,pos,ns,1.763931491,-0.000120691,0.0002202,-0.548095639,0.584020687,neg,ns,0.720966047,Gm49044,Gm49044_Intergenic_upstream,14,80901885,80901934,80901885,80901886,50,-,CGAAGGAAAAAGACTTGATCGTGAACCTGAGGGAAAGATAATCAAATGTT,Distal Intergenic,14,80930737,80931037,301,1,Gm49044-201,-28852,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9939,cg17355765,0.0000773,0.00000934,8.274916292,3.86E-15,gain,yes,0.0000464,0.0000159,2.920693333,0.003748787,pos,ns,0.026994175,0.004649883,5.805345519,1.59E-08,pos,ns,7.798971248,-0.000524316,0.000159909,-3.278839306,0.001160884,neg,ns,0.430676253,Hs6st2,Hs6st2_Exon,X,51680275,51680324,51680323,51680324,50,+,AGCTGAACGCCTGCAGGCGGAGGAGCTGGCATTCTGTGCCGGGGCACACG,"Exon (Hs6st2-201/Hs6st2, exon 2 of 5)",20,51387212,51681703,294492,2,Hs6st2-201,1379,Hs6st2-201;Hs6st2-202;Hs6st2-204;Hs6st2-205;Hs6st2-203,Hs6st2;Hs6st2;Hs6st2;Hs6st2;Hs6st2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,6,50786,ENSMUSG00000062184,conserved gene and region,X,51680149,51680343,195,*,195,20,0.620512821,1.071428571,0.102564103,8.60E-16,CpGisland,TRUE,U3,Pr-B
19768,cg17040833,-0.000106093,0.0000137,-7.740032613,1.42E-13,loss,yes,-0.000068,0.0000233,-2.920376061,0.003752502,neg,ns,0.038114089,0.006822116,5.586842634,5.06E-08,pos,ns,7.295480546,-0.00131765,0.000234612,-5.616295957,4.34E-08,neg,yes,0.769474424,Ppp4r3a,Ppp4r3a_threeUTR,12,101045609,101045658,101045609,101045610,50,+,CGTTAAATTGCCAATTTGCTATTAATCAAGTCCTTCATGAGCAGGTAGCC,3' UTR,12,101039409,101083663,44255,2,Ppp4r3a-201,38005,Ppp4r3a-201;Ppp4r3a-205;Ppp4r3a-202;Ppp4r3a-208;Ppp4r3a-206,Ppp4r3a;Ppp4r3a;Ppp4r3a;Ppp4r3a;Ppp4r3a,0;0;0;-2064;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,10,68734,ENSMUSG00000041846,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10773,cg12883843,0.0000199,0.00000341,5.834973137,1.35E-08,gain,yes,-0.0000169,0.0000058,-2.919892901,0.003758166,neg,ns,-0.000695242,0.001697852,-0.409483397,0.682467739,neg,ns,0.165917873,0.00000633,0.0000584,0.108484014,0.913681944,pos,ns,0.87988662,Tmem266,Tmem266_fiveUTR,9,55380734,55380783,55380782,55380783,50,-,GAAGAAACCAAGAGCATTGCTCCTGTGCAGCTGGTGAACTTTGCCTATCG,5' UTR,9,55326913,55438345,111433,1,Tmem266-202,53821,Tmem266-202;Tmem266-201;Tmem266-203,Tmem266;Tmem266;Tmem266,0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,2,244886,ENSMUSG00000032313,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11398,cg06048014,-0.0000726,0.0000155,-4.685993137,0.00000418,loss,ns,-0.0000768,0.0000263,-2.918883286,0.003770027,neg,ns,-0.013713857,0.007711511,-1.778361889,0.076324465,neg,ns,1.11733623,-0.0000193,0.000265198,-0.072748647,0.942053051,neg,ns,0.723990355,Galntl6,Galntl6_Exon,8,57958411,57958460,57958411,57958412,50,+,CGATCATGGGACACACGATGGTTTTGTGGTTTAGTGCAATTTGGTCTGAA,"Exon (Galntl6-208/Galntl6, exon 7 of 13)",8,57774052,58912640,1138589,2,Galntl6-208,954180,Galntl6-208;Galntl6-202,Galntl6;Galntl6,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,270049,ENSMUSG00000096914,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18061,cg03262217,-0.00000657,0.00000317,-2.069844372,0.039294924,loss,ns,0.0000157,0.00000539,2.918879934,0.003770067,pos,ns,0.003151884,0.001579756,1.995171339,0.046899242,pos,ns,1.328834174,-0.00011658,0.0000543,-2.145868153,0.032659727,neg,ns,0.925857529,Pola1,Pola1_Intron,X,93429780,93429829,93429780,93429781,50,+,CGACTACAGCTGTAATTTCTAACTTGATTAATTAGGATGGTAACAGTCCT,"Intron (Pola1-201/Pola1, intron 34 of 36)",20,93304767,93632155,327389,2,Pola1-201,202326,Pola1-201,Pola1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,59,62,18968,ENSMUSG00000006678,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22127,cg00966157,-0.00000357,0.0000118,-0.302144302,0.762744671,loss,ns,0.0000585,0.0000201,2.918451766,0.003775108,pos,ns,0.000563377,0.005876211,0.095874166,0.923682459,pos,ns,0.034477303,0.000211439,0.000202082,1.046300379,0.296237496,pos,ns,0.708103421,Agbl4,Agbl4_Intron,4,111224543,111224592,111224591,111224592,50,+,AAAATAGGCTACCTCGTCAAAACAGCATTTAACTAAATGGGTGAGCAACG,"Intron (Agbl4-205/Agbl4, intron 5 of 8)",4,110397698,111567010,1169313,1,Agbl4-205,826845,Agbl4-205;Agbl4-206;Agbl4-201;Agbl4-202;Agbl4-207;Agbl4-209,Agbl4;Agbl4;Agbl4;Agbl4;Agbl4;Agbl4,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,16,78933,ENSMUSG00000061298,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2136,cg26155004,0.0000385,0.0000156,2.469978696,0.014050251,gain,ns,0.0000774,0.0000265,2.918155282,0.003778601,pos,ns,0.016912996,0.007766237,2.177759504,0.030177571,pos,ns,1.520315716,-0.000236942,0.00026708,-0.88715789,0.375681648,neg,ns,0.711618017,Bhlhe22,Bhlhe22_Intergenic_downstream,3,18058545,18058594,18058593,18058594,50,+,TATGAAAACTGTCGACTATAATACCTAAATTCATTTAATGAAACACATCG,Distal Intergenic,3,18054174,18057517,3344,1,Bhlhe22-201,4371,Bhlhe22-201,Bhlhe22,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,22,59058,ENSMUSG00000025128,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
1032,cg23121302,0.000190492,0.0000105,18.08981953,1.96E-50,gain,yes,-0.0000522,0.0000179,-2.917990435,0.003780545,neg,ns,-0.00158129,0.005241062,-0.301711825,0.763074051,neg,ns,0.117433315,0.000375296,0.00018024,2.082203692,0.03814369,pos,ns,0.787279179,Prkn,Prkn_Exon,17,11067170,11067219,11067218,11067219,50,-,GTCGATTCTGACACCAGCATCTTCCAGCTCAAGGAGGTGGTTGCTAAGCG,"Exon (Prkn-201/Prkn, exon 2 of 7)",17,10840384,11557234,716851,1,Prkn-201,226786,Prkn-201;Prkn-205;Prkn-209;Prkn-216;Prkn-211;Prkn-212;Prkn-213;Prkn-214;Prkn-215;Prkn-203;Prkn-210,Prkn;Prkn;Prkn;Prkn;Prkn;Prkn;Prkn;Prkn;Prkn;Prkn;Prkn,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,4,50873,ENSMUSG00000023826,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26060,cg26275002,0.0000319,0.0000168,1.898495792,0.058559309,gain,ns,-0.0000832,0.0000285,-2.917183629,0.003790073,neg,ns,-0.003998543,0.008355636,-0.478544445,0.632600077,neg,ns,0.19887076,-0.000371711,0.00028735,-1.293583108,0.19677248,neg,ns,0.271187867,Etnk1,Etnk1_Intergenic_downstream,6,143530916,143530965,143530964,143530965,50,-,CCATAAATCAATAAAGTAATTGCTACATAATGACCTATTGTTGGTGTTCG,Distal Intergenic,6,143167254,143192282,25029,1,Etnk1-202,363711,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,10,75320,ENSMUSG00000030275,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12317,cg13895439,0.0000997,0.0000114,8.740932177,1.49E-16,gain,yes,-0.0000565,0.0000194,-2.916917069,0.003793225,neg,ns,0.017719357,0.005678862,3.120230065,0.001977103,pos,ns,2.703970606,-0.000795357,0.000195296,-4.072579776,0.0000591,neg,ns,0.141830748,Gm18541,Gm18541_Intron,9,63927876,63927925,63927876,63927877,50,+,CGGGGCTGGAAGAAAAAACAATAATTAGGTCACTGGGCAGGCGGCAGAGA,"Intron (Gm36033-201/Gm36033-201, intron 1 of 1)",9,63898265,63898802,538,1,Gm18541-201,29611,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,13,100417338,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
11620,cg14804833,0.0000405,0.00000488,8.31115078,3.01E-15,gain,yes,-0.0000242,0.00000828,-2.91678961,0.003794734,neg,ns,0.001192723,0.002426647,0.491510601,0.623413174,pos,ns,0.205224024,0.00000351,0.0000835,0.04207063,0.966469477,pos,ns,0.096712783,Emx2,Emx2_Intergenic_downstream,19,59467298,59467347,59467298,59467299,50,-,CGGCTCGCCTTGATCCACTGCAAACAAATTTGGCGCACTTTCGAGTCCTT,Downstream (1-2kb),19,59462802,59464215,1414,1,Emx2-203,4545,Emx2-201;Emx2-202;Emx2-203,Emx2;Emx2;Emx2,0;7779;4496,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,15,23,13797,ENSMUSG00000043969,mapped to different genes,19,59467121,59467392,272,*,272,18,0.525735294,0.993103448,0.066176471,7.09E-11,CpGisland,TRUE,U13,Hc-P
7712,cg26022924,-0.00000387,0.00000488,-0.793723741,0.427963403,loss,ns,-0.0000242,0.00000829,-2.91673427,0.003795389,neg,ns,-0.00597216,0.002427662,-2.460045956,0.014437303,neg,ns,1.840513935,-0.00000872,0.0000835,-0.104465284,0.916867672,neg,ns,0.916299349,Reck,Reck_Exon,4,43905084,43905133,43905084,43905085,50,-,CGTTACCTGCAGCTGATGAGCTCCAAAAAGAGCGAAACCTATTAGGTCCT,"Exon (Gm27265-201/Gm27265-201, exon 1 of 1)",4,43875530,43944745,69216,1,Reck-202,29554,Reck-202;Reck-201,Reck;Reck,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,53614,ENSMUSG00000028476,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7758,cg19092999,-0.00000826,0.00000178,-4.638487479,0.00000518,loss,ns,0.00000882,0.00000302,2.915820693,0.003806217,pos,ns,0.00184725,0.000885925,2.085108099,0.037877374,pos,ns,1.42162014,-0.0000134,0.0000305,-0.440043118,0.660212521,neg,ns,0.062135555,Usf3,Usf3_Promoter,16,44172956,44173005,44173004,44173005,50,+,CTACCTTTAAGAATATTTCCTGTTTCTTCAACCCAACTTGCACACCTCCG,Promoter (<=1kb),16,44173246,44227465,54220,1,Usf3-202,-241,Usf3-202;Usf3-201;Usf3-203;Usf3-204,Usf3;Usf3;Usf3;Usf3,-241;-392;-392;-392,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,1,207806,ENSMUSG00000068284,conserved gene and region,16,44173004,44173764,761,*,761,86,0.768725361,0.766831486,0.113009198,2.66E-70,CpGisland,TRUE,U2,Pr-W
14997,cg08279414,-0.0000208,0.00000903,-2.308417332,0.021633714,loss,ns,0.0000447,0.0000153,2.915798721,0.003806478,pos,ns,-0.001346112,0.004492107,-0.299661695,0.76463604,neg,ns,0.116545236,0.000255666,0.000154483,1.654976601,0.098941254,pos,ns,0.870936229,Pou4f2,Pou4f2_Intergenic_downstream,8,78422070,78422119,78422070,78422071,50,+,CGGCTAATTTTCGATCAGATATAAATTAGAGCCCCAACAGTTATTTGCCT,Distal Intergenic,8,78433010,78436645,3636,2,Pou4f2-201,14526,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,23,18997,ENSMUSG00000031688,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
16851,cg00128439,0.000002,0.00000428,0.467458004,0.640500653,gain,ns,0.0000212,0.00000726,2.915593375,0.003808916,pos,ns,0.007762637,0.002128306,3.64733051,0.00031073,pos,ns,3.507616152,-0.00025179,0.0000732,-3.440120346,0.000661128,neg,ns,0.910331752,Dhx40,Dhx40_Exon,11,86773846,86773895,86773846,86773847,50,+,CGTAGTACTTCATGTTTAGGGCCTTCAAAGGTCTCTTTTGGGAAATCACT,"Exon (Dhx40-201/Dhx40, exon 15 of 18)",11,86768846,86807746,38901,2,Dhx40-201,33851,Dhx40-201;Dhx40-204,Dhx40;Dhx40,0;27193,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,67487,ENSMUSG00000018425,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24562,cg15985470,0.00000259,0.00000861,0.301129088,0.763517939,gain,ns,0.0000426,0.0000146,2.915314406,0.00381223,pos,ns,0.011925711,0.004282958,2.784456867,0.005691362,pos,ns,2.244783823,-0.000164762,0.000147291,-1.118621408,0.264167743,neg,ns,0.458713658,Fgf6,Fgf6_Exon,6,127015565,127015614,127015565,127015566,50,-,CGTGCCTGAGAGGCAAGGTGGATGGCCCTGGGACAGAAACTGTTCATCAC,Promoter (<=1kb),6,127015586,127028187,12602,1,Fgf6-201,0,Fgf6-201,Fgf6,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,5,14177,ENSMUSG00000000183,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11052,cg17896191,0.0000501,0.0000168,2.986900177,0.003043068,gain,ns,0.0000831,0.0000285,2.915058344,0.003815275,pos,ns,0.020148724,0.008350698,2.412819312,0.016409763,pos,ns,1.784897704,-0.000218191,0.00028718,-0.759771436,0.447968611,neg,ns,0.508804686,Gm13518,Gm13518_Intergenic_downstream,2,56456848,56456897,56456896,56456897,50,+,TTTTACATTTGTTAACCATATCCTTCAGCTGACGAACCATTGAGACCACG,Distal Intergenic,2,56039853,56040085,233,1,Gm13518-201,416995,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,37,37,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19551,cg10542208,0.000062,0.00000925,6.69823887,9.93E-11,gain,yes,-0.0000458,0.0000157,-2.914471054,0.003822266,neg,ns,0.023535512,0.004604145,5.111809755,0.000000559,pos,ns,6.252282779,-0.000984146,0.000158336,-6.215549759,1.65E-09,neg,yes,0.618960237,Asic1,Asic1_threeUTR,15,99700239,99700288,99700287,99700288,50,+,CTGTACTGTGTACACACATCCCTCTGAGAAGCACAAGGAGACGACACGCG,3' UTR,15,99670368,99701128,30761,1,Asic1-201,29871,Asic1-201;Asic1-204;Asic1-205;Asic1-206;Asic1-203;Gm17349-201;Smarcd1-201;Smarcd1-203;Smarcd1-202;Smarcd1-204;Smarcd1-206;Smarcd1-205,Asic1;Asic1;Asic1;Asic1;Asic1;Gm17349;Smarcd1;Smarcd1;Smarcd1;Smarcd1;Smarcd1;Smarcd1,0;0;8006;5195;0;5202;0;0;-2306;-2326;-2641;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,6,11419,ENSMUSG00000023017,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27758,cg00951891,-0.00000862,0.00000166,-5.190254362,0.000000381,loss,yes,0.00000822,0.00000282,2.913561342,0.003833118,pos,ns,0.000489948,0.000826706,0.592651369,0.553846551,pos,ns,0.256610545,-0.0000135,0.0000284,-0.474555604,0.635437873,neg,ns,0.95627513,Enah,Enah_Exon,1,181956394,181956443,181956442,181956443,50,+,CTGTTTCCTGTGAATTTAACACTTCTAAGGCATGCATCATGGCACTTGCG,"Exon (Enah-211/Enah, exon 3 of 14)",1,181896384,182019661,123278,2,Enah-211,63218,Enah-211;Enah-202;Enah-203;Enah-205;Enah-210;Enah-201;Enah-204;Enah-212;Enah-216;Enah-207,Enah;Enah;Enah;Enah;Enah;Enah;Enah;Enah;Enah;Enah,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,13800,ENSMUSG00000022995,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16665,cg06626742,-0.0000115,0.00000673,-1.708750661,0.088498044,loss,ns,0.0000333,0.0000114,2.913527935,0.003833517,pos,ns,0.0098264,0.003348531,2.934540521,0.003589873,pos,ns,2.444920963,0.000273662,0.000115156,2.376453865,0.018087027,pos,ns,0.17263851,Tbx4,Tbx4_Intron,11,85893914,85893963,85893914,85893915,50,-,CGTTTGAAAAATGAACTACCGATGAGAACTCCTGTTGAACCTGTATTGTT,"Intron (Tbx4-203/Tbx4, intron 3 of 8)",11,85886422,85916095,29674,1,Tbx4-203,7492,Tbx4-203;Tbx4-201;Tbx4-202,Tbx4;Tbx4;Tbx4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,9,21387,ENSMUSG00000000094,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
6348,cg03456363,-0.00000244,0.00000677,-0.360511027,0.718710531,loss,ns,0.0000335,0.0000115,2.913242814,0.003836925,pos,ns,-0.003507705,0.003368298,-1.041388001,0.298506988,neg,ns,0.525045498,0.000162753,0.000115835,1.40503317,0.16101269,pos,ns,0.842587744,Tshz3,Tshz3_Intergenic_downstream,7,36945389,36945438,36945437,36945438,50,+,TAAAATACGGAGCTTTGCTCCCGTCAGCAGTCTCTGGAATCTTATTGTCG,Distal Intergenic,7,36698217,36702113,3897,1,Tshz3-202,247172,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,21,58,243931,ENSMUSG00000021217,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19425,cg18133238,-0.00000154,0.00000305,-0.505525219,0.613549231,loss,ns,0.0000151,0.00000518,2.913028344,0.00383949,pos,ns,0.002858765,0.001516776,1.884764544,0.060396931,pos,ns,1.218985126,-0.0000723,0.0000522,-1.38546974,0.16690489,neg,ns,0.929264211,Gm12689,Gm12689_Promoter,4,99295005,99295054,99295053,99295054,50,-,TTAGCCTGAGATGGAATTAGCAGACTCGGGGCTCTTTATAGGTCAAGTCG,Promoter (<=1kb),4,99295900,99297258,1359,1,Gm12689-201,-895,Gm12689-201,Gm12689,-846,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,7,26,100137011,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17396,cg22887292,0.0000209,0.00000478,4.371885887,0.0000168,gain,ns,-0.0000236,0.00000812,-2.912317727,0.003848,neg,ns,-0.000587258,0.00237824,-0.246929747,0.80512604,neg,ns,0.094136127,-0.000116291,0.0000818,-1.421865041,0.156070729,neg,ns,0.903048173,Ubap2l,Ubap2l_Exon,3,90047780,90047829,90047828,90047829,50,-,TGCTTGTGCTGTGTCTGGTTTTGGTTTTGAGGTTGTTCCCAGTTTCCCCG,"Exon (Ubap2l-215/Ubap2l, exon 2 of 27)",3,90000140,90052455,52316,2,Ubap2l-215,4626,4933434E20Rik-203;4933434E20Rik-205;4933434E20Rik-204;Ubap2l-215;Ubap2l-201;Ubap2l-202;Ubap2l-208;Ubap2l-203;Ubap2l-204;Ubap2l-220;Ubap2l-205;Ubap2l-206;Ubap2l-214;Ubap2l-213;Ubap2l-221;Ubap2l-209,4933434E20Rik;4933434E20Rik;4933434E20Rik;Ubap2l;Ubap2l;Ubap2l;Ubap2l;Ubap2l;Ubap2l;Ubap2l;Ubap2l;Ubap2l;Ubap2l;Ubap2l;Ubap2l;Ubap2l,-3807;-4985;-5000;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,14,15,74383,ENSMUSG00000042520,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13570,cg22050425,0.00000575,0.00000689,0.834559985,0.404608159,gain,ns,-0.0000341,0.0000117,-2.912114524,0.003850436,neg,ns,-0.010308533,0.00342886,-3.006402532,0.002859722,neg,ns,2.5436762,0.000110645,0.000117918,0.938318473,0.348811248,pos,ns,0.834318604,Polr2m,Polr2m_Intergenic_downstream,9,71390298,71390347,71390346,71390347,50,-,AAGTTTTTCTCCATCATTTGCAATCCAAACACTAAGAACACAGCCCTGCG,Distal Intergenic,9,71478471,71484958,6488,2,Polr2m-202,94660,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,3,28015,ENSMUSG00000032199,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4257,cg06663733,0.00000915,0.00000527,1.73667191,0.083438479,gain,ns,-0.0000261,0.00000895,-2.912038565,0.003851347,neg,ns,-0.0000186,0.002620979,-0.007078885,0.994356468,neg,ns,0.002457897,0.0000258,0.0000901,0.28583669,0.77519411,pos,ns,0.905025453,Rfx3,Rfx3_Intron,19,27988805,27988854,27988853,27988854,50,-,AAAGAAAACCATGACAACTGTTTGTACCTCTTGCTTTATTATTACATCCG,"Intron (Rfx3-201/Rfx3, intron 1 of 15)",19,27761727,28011048,249322,2,Rfx3-201,22194,Rfx3-201;Rfx3-208;Rfx3-204;Rfx3-205;Rfx3-207,Rfx3;Rfx3;Rfx3;Rfx3;Rfx3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,15,19726,ENSMUSG00000040929,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25557,cg24479366,0.000155564,0.0000164,9.503703525,5.79E-19,gain,yes,-0.000081,0.0000278,-2.911473071,0.003858137,neg,ns,-0.038651285,0.008146911,-4.744287018,0.0000032,neg,ns,5.495097058,0.001045603,0.000280172,3.732009602,0.00022592,pos,ns,0.715023587,Ebf3,Ebf3_Intron,7,137227660,137227709,137227660,137227661,50,+,CGCAGAGCACACACTGGGAACCTGCCCTTAACTAGCGCTGTTGACTTCAT,"Intron (Ebf3-204/Ebf3, intron 8 of 15)",7,137193673,137314445,120773,2,Ebf3-204,86736,Ebf3-204;Ebf3-201;Ebf3-202;Ebf3-203;Ebf3-208;Ebf3-205;Ebf3-207,Ebf3;Ebf3;Ebf3;Ebf3;Ebf3;Ebf3;Ebf3,0;0;0;0;0;0;-858,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,62,84,13593,ENSMUSG00000010476,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19629,cg27133206,0.0000438,0.0000177,2.470796381,0.014018802,gain,ns,0.0000876,0.0000301,2.908670049,0.003891953,pos,ns,0.051282592,0.008819138,5.814920818,1.51E-08,pos,ns,7.821368404,-0.001342371,0.000303289,-4.426038256,0.0000133,neg,ns,0.8340957,Gdap2,Gdap2_Exon,3,100190893,100190942,100190893,100190894,50,+,CGCTGGTTATGTCAAGCAAGATCTGAGGATCTGTCTGATATTGCTTCTCT,"Exon (Gdap2-201/Gdap2, exon 9 of 14)",3,100162381,100206981,44601,1,Gdap2-201,28512,Gdap2-201;Gdap2-202;Gdap2-204,Gdap2;Gdap2;Gdap2,0;0;-3638,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,14547,ENSMUSG00000027865,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3942,cg22655206,-0.000299257,0.000118176,-2.532304528,0.01182493,loss,ns,-0.000583793,0.000200765,-2.907841324,0.003902002,neg,ns,-0.142703738,0.058817379,-2.426217207,0.01582734,neg,ns,1.800592069,0.004322296,0.002022725,2.136867961,0.033391256,pos,ns,0.593476261,5730522E02Rik,5730522E02Rik_Intron,11,25855526,25855575,25855526,25855527,50,+,CGGATTAATAAGATAAAAAATTTGAAAAAGCCGTCAGTCAGGGAGCGAAA,"Intron (5730522E02Rik-202/5730522E02Rik, intron 2 of 5)",11,25617668,26210569,592902,2,5730522E02Rik-202,354994,5730522E02Rik-202;5730522E02Rik-201;5730522E02Rik-204,5730522E02Rik;5730522E02Rik;5730522E02Rik,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,90,70626,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8308,cg02841987,0.000127386,0.00000978,13.03056225,2.99E-31,gain,yes,-0.0000483,0.0000166,-2.907527635,0.003905812,neg,ns,-0.015122929,0.004865579,-3.108146121,0.002057174,neg,ns,2.686729047,0.000633628,0.000167327,3.786768359,0.000183264,pos,ns,0.709055553,Zeb2,Zeb2_Intron,2,44999998,45000047,44999998,44999999,50,-,CGGTATGACAACTGCTAGGGTGTGCTGAATCTTCCCACATTCCTAGTGAG,"Intron (Zeb2-212/Zeb2, intron 7 of 10)",2,44983632,45117395,133764,2,Zeb2-212,117348,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-227;Zeb2-216;Zeb2-229;Zeb2-218;Zeb2-222,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26795,cg14562227,-0.0000119,0.00000889,-1.334516603,0.183013981,loss,ns,0.0000439,0.0000151,2.907463679,0.003906589,pos,ns,0.006869817,0.004426176,1.55208866,0.121661292,pos,ns,0.914847575,-0.000278673,0.000152216,-1.830776479,0.068093725,neg,ns,0.600965053,Chd5,Chd5_Exon,4,152385775,152385824,152385775,152385776,50,-,CGGGGCCCTGGACCGGGAGGGATTGTCAACTACAACCAGATGCCCCTGGG,"Exon (Chd5-202/Chd5, exon 40 of 42)",4,152338651,152390194,51544,1,Chd5-202,47124,Chd5-202;Chd5-205;Chd5-201;Chd5-203;Kcnab2-206;Kcnab2-208;Kcnab2-201;Kcnab2-218;Kcnab2-217,Chd5;Chd5;Chd5;Chd5;Kcnab2;Kcnab2;Kcnab2;Kcnab2;Kcnab2,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,7,269610,ENSMUSG00000005045,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
619,cg02950845,-0.00000362,0.00000568,-0.63662931,0.524836131,loss,ns,0.0000281,0.00000966,2.905795794,0.003926908,pos,ns,0.007037893,0.002828634,2.488088999,0.01336817,pos,ns,1.873928037,-0.000198359,0.0000973,-2.039120953,0.042285839,neg,ns,0.906062158,Gm44908,Gm44908_Intergenic_downstream,8,7289560,7289609,7289608,7289609,50,+,ATTCCACTAATTTAAAGTAAATGCTTTTACAGATGGCATCTGTTAGGCCG,Distal Intergenic,8,7231234,7231499,266,1,Gm44908-201,58326,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,3,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21195,cg03603703,-0.00000669,0.00000418,-1.599529266,0.110721687,loss,ns,0.0000206,0.0000071,2.905661279,0.003928551,pos,ns,0.004257284,0.00208107,2.045718269,0.041627768,pos,ns,1.380616876,-0.0000887,0.0000716,-1.238769509,0.216368021,neg,ns,0.897079579,Mpped2,Mpped2_Exon,2,106699448,106699497,106699448,106699449,50,+,CGGTGGATGAGTACAGCTCAAACCCCACCCAGGCATTCACGCACTACAAC,"Exon (Mpped2-202/Mpped2, exon 2 of 7)",2,106693269,106868356,175088,1,Mpped2-202,6179,Mpped2-202;Mpped2-206;Mpped2-201;Mpped2-203;Mpped2-204,Mpped2;Mpped2;Mpped2;Mpped2;Mpped2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,16,33,77015,ENSMUSG00000016386,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12730,cg11102919,0.0000574,0.000004,14.34103727,3.96E-36,gain,yes,-0.0000198,0.0000068,-2.905357431,0.003932265,neg,ns,-0.003857431,0.001993019,-1.935471652,0.053841626,neg,ns,1.268881834,0.0000848,0.0000685,1.237361195,0.216889449,pos,ns,0.08291084,Rsrc1,Rsrc1_Promoter,3,66982309,66982358,66982357,66982358,50,-,TGGCCATTAATCCAGGATTGACAAGAATCCCTAATTAATTTAATTAGGCG,Promoter (<=1kb),3,66981390,67356559,375170,1,Rsrc1-206,919,Rsrc1-206;Rsrc1-207;Rsrc1-203;Rsrc1-208;Rsrc1-202;Rsrc1-201;Rsrc1-209;Rsrc1-205;Rsrc1-204;Shox2-203;Shox2-201;Shox2-202;Shox2-204;Shox2-205,Rsrc1;Rsrc1;Rsrc1;Rsrc1;Rsrc1;Rsrc1;Rsrc1;Rsrc1;Rsrc1;Shox2;Shox2;Shox2;Shox2;Shox2,0;-3312;0;0;0;0;0;0;-3620;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,3,37,66880,ENSMUSG00000034544,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
7166,cg04093455,-0.00000276,0.00000267,-1.036121733,0.3009529,loss,ns,-0.0000132,0.00000453,-2.905077383,0.00393569,neg,ns,-0.003473002,0.001326691,-2.617793319,0.009284361,neg,ns,2.032247964,0.00000283,0.0000456,0.061966306,0.950629597,pos,ns,0.918559443,Lcor,Lcor_Exon,19,41558288,41558337,41558336,41558337,50,-,TCAGTTTCCTTCCATCCAATTAGGCGACCTGGGAGACCCAGCCAGTACCG,"Exon (Lcor-201/Lcor, exon 8 of 8)",19,41482637,41562261,79625,1,Lcor-201,75651,Lcor-201;Lcor-204;Lcor-206;Lcor-202;Lcor-205,Lcor;Lcor;Lcor;Lcor;Lcor,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,25,212391,ENSMUSG00000025019,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24408,cg23568020,0.000368337,0.0000155,23.70100329,1.42E-71,gain,yes,-0.0000767,0.0000264,-2.904899885,0.003937863,neg,ns,0.015275209,0.0077349,1.974842356,0.049173091,pos,ns,1.308272489,0.000308749,0.000266003,1.160700996,0.246656557,pos,ns,0.3933072,Grik3,Grik3_Intergenic_upstream,4,125431116,125431165,125431116,125431117,50,-,CGCCCCTAAGGGTGCCATGTGTTTATCTTGCTTTCGAGTTAAAAAGGAAA,Distal Intergenic,4,125490700,125714173,223474,1,Grik3-201,-59584,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,18,14807,ENSMUSG00000001985,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13286,cg00785632,-0.0000128,0.00000806,-1.589807912,0.112897388,loss,ns,0.0000398,0.0000137,2.904800201,0.003939083,pos,ns,0.014697621,0.004011359,3.664000272,0.000291968,pos,ns,3.534664671,-0.000412548,0.00013795,-2.990557303,0.003007887,neg,ns,0.877112268,Ubr3,Ubr3_Exon,2,69999118,69999167,69999166,69999167,50,+,TATTGATCTCATTTATATTCCCTTGATGAAGGAACACATGCTGGTCTCCG,"Exon (Ubr3-205/Ubr3, exon 2 of 12)",2,69897246,70024013,126768,1,Ubr3-201,101872,Ubr3-201;Ubr3-202;Ubr3-210;Ubr3-205;Ubr3-204,Ubr3;Ubr3;Ubr3;Ubr3;Ubr3,0;0;0;0;-1342,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,5,68795,ENSMUSG00000044308,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
1277,cg07053071,-0.00000244,0.00000685,-0.356709547,0.721551933,loss,ns,-0.0000338,0.0000116,-2.904382309,0.003944204,neg,ns,0.009255799,0.003408029,2.71588053,0.006980814,pos,ns,2.15609393,-0.000579853,0.000117202,-4.947470452,0.00000124,neg,yes,0.131969675,Ptprg,Ptprg_Intron,14,12162093,12162142,12162093,12162094,50,-,CGTTTTTATTTGCTTCTACTGGGATGAGAGCCAAGCCAGTAAAAGGCAAA,"Intron (Ptprg-201/Ptprg, intron 12 of 29)",14,11553532,12242041,688510,1,Ptprg-201,608561,Ptprg-201;Ptprg-204;Ptprg-208;Ptprg-207,Ptprg;Ptprg;Ptprg;Ptprg,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,23,19270,ENSMUSG00000021745,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11774,cg15923785,0.0000765,0.0000187,4.090593736,0.0000549,gain,ns,-0.0000922,0.0000318,-2.904226527,0.003946114,neg,ns,0.011666727,0.009302369,1.254167319,0.21072606,pos,ns,0.676281753,-0.001164514,0.000319908,-3.640155429,0.000319151,neg,ns,0.447334579,Mbnl1,Mbnl1_Exon,3,60529735,60529784,60529783,60529784,50,+,ATTTGCACATCCTTCGAAAAGCTGCCAAGTTGAAAATGGACGAGTAATCG,"Exon (Mbnl1-221/Mbnl1, exon 2 of 4)",3,60472830,60595764,122935,1,Mbnl1-222,56905,Mbnl1-222;Mbnl1-221;Mbnl1-216;Mbnl1-220;Mbnl1-211;Mbnl1-204;Mbnl1-201;Mbnl1-209;Mbnl1-202;Mbnl1-225;Mbnl1-217;Mbnl1-203;Mbnl1-218;Mbnl1-208;Mbnl1-219;Mbnl1-214;Mbnl1-207;Mbnl1-205;Mbnl1-212,Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,19,36,56758,ENSMUSG00000027763,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14953,cg18526971,0.0000302,0.00000355,8.524092727,6.85E-16,gain,yes,-0.0000175,0.00000603,-2.904061637,0.003948137,neg,ns,-0.000628688,0.001766182,-0.355958633,0.722113659,neg,ns,0.14139444,0.000175573,0.0000607,2.890615319,0.004116327,pos,ns,0.073603497,Nr2f1,Nr2f1_Exon,13,78198110,78198159,78198158,78198159,50,-,AAATATTCACCTTCCCGCCTCATGCCCACTTTGAGGCACTTCTTGAGGCG,"Exon (A830082K12Rik-206/A830082K12Rik-206, exon 1 of 3)",13,78188973,78199757,10785,2,Nr2f1-201,1598,Nr2f1-201;Nr2f1-205;Nr2f1-203;Nr2f1-202;Nr2f1-206,Nr2f1;Nr2f1;Nr2f1;Nr2f1;Nr2f1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,25,55,13865,ENSMUSG00000069171,mapped to different genes,13,78198053,78198549,497,*,497,49,0.674044266,0.872867384,0.098591549,3.88E-37,CpGisland,TRUE,U3,Pr-B
21209,cg18763039,0.00000368,0.0000113,0.325324603,0.745154871,gain,ns,0.0000557,0.0000192,2.903219907,0.003958479,pos,ns,0.014094803,0.005625133,2.505683479,0.012733844,pos,ns,1.895040479,-0.000370406,0.000193448,-1.914757156,0.056443672,neg,ns,0.816232734,Trnt1,Trnt1_Promoter,6,106760306,106760355,106760306,106760307,50,-,CGATTCTACATTTGCTGAGAAATATCTTTATTTGTCCTCTGGGAGATCTT,Promoter (8-9kb),6,106769120,106777681,8562,1,Trnt1-202,-8814,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,1,70047,ENSMUSG00000013736,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19257,cg18298589,-0.0000077,0.00000512,-1.503980175,0.133604557,loss,ns,-0.0000252,0.00000869,-2.903189812,0.003958849,neg,ns,-0.001491468,0.00254703,-0.585571555,0.558589504,neg,ns,0.252907229,-0.0000285,0.0000876,-0.325551563,0.74498329,neg,ns,0.875028468,Tnpo1,Tnpo1_Exon,13,98850171,98850220,98850219,98850220,50,-,CCAATTGTTATTGCTAAGGTAACGCAATCACGGTTATACACCACCAAACG,"Exon (Tnpo1-201/Tnpo1, exon 20 of 24)",13,98839019,98891040,52022,2,Tnpo1-201,40820,Tnpo1-201;Tnpo1-202;Tnpo1-206;Tnpo1-204,Tnpo1;Tnpo1;Tnpo1;Tnpo1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,9,238799,ENSMUSG00000009470,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6277,cg14615301,-0.0000753,0.0000132,-5.697879213,2.82E-08,loss,yes,0.0000652,0.0000225,2.903169449,0.0039591,pos,ns,-0.003511588,0.006580809,-0.53361033,0.593993547,neg,ns,0.226218273,0.000373438,0.000226313,1.650089556,0.099937414,pos,ns,0.690781947,Tshz3,Tshz3_Intron,7,36710899,36710948,36710899,36710900,50,-,CGATGCTGGAGAGAAGTCTGATTATGAACAGAAGTAATATTTATTGTTTG,"Intron (Tshz3-201/Tshz3, intron 1 of 1)",7,36698118,36773553,75436,1,Tshz3-201,12781,Tshz3-201,Tshz3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,58,243931,ENSMUSG00000021217,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24848,cg24655241,0.00000858,0.000012,0.714252474,0.475608531,gain,ns,-0.0000592,0.0000204,-2.902894178,0.003962487,neg,ns,0.046882984,0.005978677,7.841699388,7.22E-14,pos,yes,13.14143209,-0.001242737,0.000205606,-6.044260317,4.30E-09,neg,yes,0.656295091,Gdf11,Gdf11_Exon,10,128885303,128885352,128885303,128885304,50,+,CGGAGCAGTAGTTGGCCTTGTAGCGCTTAGGTGCGATGATCCAGTCCCAG,"Exon (Gdf11-201/Gdf11, exon 3 of 3)",10,128882295,128891718,9424,2,Gdf11-201,6366,Gdf11-201,Gdf11,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,7,14561,ENSMUSG00000025352,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7005,cg26011419,-0.00000811,0.00000505,-1.607810004,0.108894762,loss,ns,0.0000249,0.00000857,2.901859976,0.00397524,pos,ns,0.000283599,0.002511659,0.112912896,0.910172696,pos,ns,0.040876197,0.0000588,0.0000864,0.680441839,0.496732608,pos,ns,0.890349087,Gm7382,Gm7382_Promoter,15,40533754,40533803,40533802,40533803,50,-,TTCTCTGCATAATTAATCCATCTCTGCCTCTCTTCATGCCAACTCGCCCG,Promoter (3-4kb),15,40537321,40538425,1105,1,Gm7382-201,-3567,Gm7382-201,Gm7382,-3518,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,17,22,664872,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11415,cg12880090,-0.0000579,0.000012,-4.833836733,0.00000211,loss,ns,-0.0000591,0.0000204,-2.90182979,0.003975612,neg,ns,0.040810297,0.005962335,6.844683404,4.11E-11,pos,yes,10.38613418,-0.001591602,0.000205044,-7.76223719,1.22E-13,neg,yes,0.477378864,Larp1,Larp1_Exon,11,58057304,58057353,58057352,58057353,50,+,TTCCAAAGCCAAAAATTTGGACATTGACCCCAAACTGCAAGAATACCTCG,"Exon (Larp1-201/Larp1, exon 18 of 19)",11,58009064,58062031,52968,1,Larp1-201,48240,Larp1-201;Larp1-203,Larp1;Larp1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,6,73158,ENSMUSG00000037331,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4686,cg26423680,-0.0000523,0.00000863,-6.068701406,3.76E-09,loss,yes,0.0000425,0.0000147,2.901722661,0.003976935,pos,ns,-0.008761316,0.004293119,-2.04078129,0.042119396,neg,ns,1.375517869,0.000365156,0.00014764,2.473284403,0.013923494,pos,ns,0.652149935,Mecom,Mecom_Intron,3,30106688,30106737,30106688,30106689,50,+,CGCGGGCTGCTCTAGTCAGGACTTATCGTCTATCATACTGATTGACGAAA,"Intron (Mecom-212/Mecom, intron 1 of 15)",3,29951299,30509733,558435,2,Mecom-212,402996,Mecom-212;Mecom-203;Mecom-210;Mecom-213;Mecom-207;Mecom-208;Mecom-211,Mecom;Mecom;Mecom;Mecom;Mecom;Mecom;Mecom,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,80,14013,ENSMUSG00000027684,conserved gene and region,3,30106598,30106734,137,*,137,14,0.613138686,1.097254005,0.102189781,3.95E-11,CpGisland,TRUE,U9,En-Pp
10275,cg08866989,0.0000225,0.0000039,5.778305495,1.84E-08,gain,yes,-0.0000192,0.00000663,-2.900422211,0.00399303,neg,ns,-0.002766762,0.001941818,-1.424830505,0.155212157,neg,ns,0.809074265,0.0000611,0.0000668,0.914824922,0.360994571,pos,ns,0.92219221,Neb,Neb_Exon,2,52325723,52325772,52325723,52325724,50,-,CGGCCTGGACAAGTTCAGGGGCATCAGGAGGAAGCAGGTACTTATCCTTG,"Exon (Neb-202/Neb, exon 8 of 157)",2,52136647,52338798,202152,2,Neb-202,13026,Neb-202;Neb-203;Neb-213;Neb-214;Neb-212;Neb-211;Neb-206,Neb;Neb;Neb;Neb;Neb;Neb;Neb,0;0;0;0;0;0;13026,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,8,17996,ENSMUSG00000026950,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17404,cg09311009,-0.0000141,0.00000497,-2.838899209,0.004825849,loss,ns,-0.0000245,0.00000844,-2.899345741,0.004006397,neg,ns,-0.003896086,0.002474084,-1.574759424,0.116331949,neg,ns,0.934300995,0.000106502,0.0000851,1.251729934,0.211611955,pos,ns,0.874509767,Tpm3,Tpm3_Exon,3,90098384,90098433,90098432,90098433,50,-,ACAGCCAACTTGAGCGAAACCGCCTGCTTTCTAATGAGCTGAAGCTAACG,"Exon (Tpm3-203/Tpm3, exon 8 of 8)",3,90072651,90100902,28252,1,Tpm3-204,25733,Tpm3-204;Tpm3-201;Tpm3-202;Tpm3-203;Tpm3-210,Tpm3;Tpm3;Tpm3;Tpm3;Tpm3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,6,59069,ENSMUSG00000027940,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19419,cg10437383,0.0000144,0.00000335,4.301162596,0.0000228,gain,ns,-0.0000165,0.0000057,-2.899262123,0.004007437,neg,ns,0.006802341,0.001668649,4.076556616,0.0000581,pos,ns,4.235506117,-0.00012712,0.0000574,-2.215223367,0.02747131,neg,ns,0.949360708,Gm12689,Gm12689_Intergenic_upstream,4,99282317,99282366,99282365,99282366,50,+,AGTTATTACACAAGAGTTAGACTAAATCAAACCAAACCGCAATGTTTGCG,Distal Intergenic,4,99295900,99297258,1359,1,Gm12689-201,-13534,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,26,100137011,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20663,cg21811040,-0.00000195,0.0000024,-0.810595461,0.418219872,loss,ns,0.0000118,0.00000408,2.898834196,0.004012764,pos,ns,0.002679044,0.001196211,2.239607773,0.025825134,pos,ns,1.587957424,-0.0000825,0.0000411,-2.005356499,0.045793843,neg,ns,0.944451723,Adamts6,Adamts6_Intron,13,104390855,104390904,104390855,104390856,50,-,CGGCTTCATTCAGGACCCATGACCTAGTGCCATGTTGATGGCTTTTCCAT,"Intron (Adamts6-207/Adamts6, intron 13 of 24)",13,104287835,104496695,208861,1,Adamts6-207,103020,Adamts6-207;Adamts6-202;Adamts6-201;Adamts6-206;Adamts6-203;Adamts6-204,Adamts6;Adamts6;Adamts6;Adamts6;Adamts6;Adamts6,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,31,108154,ENSMUSG00000046169,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3435,cg26310051,0.00004,0.00000253,15.83178471,8.78E-42,gain,yes,-0.0000125,0.0000043,-2.898567224,0.00401609,neg,ns,0.000499582,0.001258471,0.396975925,0.691658374,pos,ns,0.160108361,0.000115961,0.0000433,2.679394024,0.007769416,pos,ns,0.079210059,Bcl11a,Bcl11a_fiveUTR,11,24078289,24078338,24078337,24078338,50,-,TTTTCTCTGGAGTCTCCTTCTTTCTAACCCGGCTCTCCCGATGTGAACCG,Promoter (<=1kb),11,24078056,24173194,95139,1,Bcl11a-201,233,A830031A19Rik-201;Bcl11a-201;Bcl11a-203;Bcl11a-205;Bcl11a-202;Bcl11a-204,A830031A19Rik;Bcl11a;Bcl11a;Bcl11a;Bcl11a;Bcl11a,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,10,98,14025,ENSMUSG00000000861,conserved gene and region,11,24078318,24078446,129,*,129,20,0.705426357,1.347962382,0.15503876,8.63E-20,CpGisland,TRUE,NA,NRS
10215,cg12056279,0.000186115,0.0000112,16.63886493,7.19E-45,gain,yes,-0.0000551,0.000019,-2.898393829,0.004018252,neg,ns,0.002952066,0.005567162,0.530264011,0.596308507,pos,ns,0.224528995,0.000302505,0.000191454,1.580039705,0.11511754,pos,ns,0.140534847,Hoxa11,Hoxa11_Exon,6,52245461,52245510,52245509,52245510,50,+,CCGCGGAGTAGCAGTGGGCCAGATTGCCGCGGGGGTGCCATTTAGTGGCG,Promoter (<=1kb),6,52242106,52245810,3705,2,Hoxa11-201,300,Hoxa10-201;Hoxa10-204;Hoxa11-201;Hoxa11-202,Hoxa10;Hoxa10;Hoxa11;Hoxa11,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,15,18,15396,ENSMUSG00000038210,mapped to different genes,6,52244948,52245549,602,*,602,70,0.674418605,1.022616968,0.11627907,2.62E-58,CpGisland,TRUE,NA,NRS
20970,cg09263213,-0.00000911,0.00000689,-1.321397894,0.187343143,loss,ns,0.0000339,0.0000117,2.898120497,0.004021662,pos,ns,0.00712612,0.003431579,2.076630309,0.038659217,pos,ns,1.412746948,-0.0002584,0.000118012,-2.189611036,0.029297578,neg,ns,0.781577819,Zfp326,Zfp326_Exon,5,105888588,105888637,105888636,105888637,50,+,TTCGGAGGTAGAAACCAGGGCGGGTCTAGCTGGGAAGCACCTTACTCCCG,"Exon (Zfp326-201/Zfp326, exon 5 of 12)",5,105876565,105914780,38216,1,Zfp326-209,12023,Zfp326-209;Zfp326-208;Zfp326-201;Zfp326-205;Zfp326-206;Zfp326-202;Zfp326-203;Zfp326-204,Zfp326;Zfp326;Zfp326;Zfp326;Zfp326;Zfp326;Zfp326;Zfp326,0;0;0;0;0;11647;0;-2307,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,11,54367,ENSMUSG00000029290,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21251,cg01179128,0.0000463,0.0000123,3.775089674,0.000191668,gain,ns,0.0000604,0.0000209,2.898052495,0.004022511,pos,ns,0.016643318,0.006110302,2.723812509,0.006819243,pos,ns,2.16626383,-0.00057869,0.000210133,-2.753924566,0.006236163,neg,ns,0.699128775,Dock3,Dock3_Exon,9,106986016,106986065,106986064,106986065,50,-,TCCTGTCGAATCAGTTCTGCTGAGCAGTCCATATACCACTTCAAACAGCG,"Exon (Dock3-201/Dock3, exon 22 of 53)",9,106892825,107231909,339085,2,Dock3-201,245844,Dock3-201,Dock3,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,9,208869,ENSMUSG00000039716,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7985,cg08629602,0.0000637,0.0000137,4.65494959,0.00000481,gain,ns,0.0000673,0.0000232,2.897949791,0.004023793,pos,ns,0.021593409,0.006808532,3.171522026,0.001668215,pos,ns,2.77774789,-0.00012466,0.000234145,-0.532405638,0.594826468,neg,ns,0.264807503,Pax2,Pax2_Intergenic_upstream,19,44674749,44674798,44674797,44674798,50,+,CACGGATTCTATTTGCATCCGGAATCGCATGTACATGAAAAATGTGTCCG,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-81247,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,19,44674652,44674916,265,*,265,31,0.59245283,1.339693412,0.116981132,3.55E-26,CpGisland,TRUE,U13,Hc-P
24790,cg09377041,0.0000108,0.00000943,1.143985185,0.253512355,gain,ns,-0.0000464,0.000016,-2.897593203,0.004028247,neg,ns,0.012382056,0.004695027,2.637270137,0.008778949,pos,ns,2.056557493,-0.00053521,0.000161462,-3.314783941,0.001025918,neg,ns,0.855878962,Smarcc2,Smarcc2_Exon,10,128461422,128461471,128461470,128461471,50,+,AAGAAGTTTTTGGCAAACATGTCAGCAATGCACCGCTCACTAAACTGCCG,"Exon (Smarcc2-205/Smarcc2, exon 2 of 5)",10,128459248,128490482,31235,1,Smarcc2-205,2174,Smarcc2-205;Smarcc2-201;Smarcc2-202;Smarcc2-203;Smarcc2-206,Smarcc2;Smarcc2;Smarcc2;Smarcc2;Smarcc2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,16,68094,ENSMUSG00000025369,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17240,cg14530830,-0.00000379,0.0000204,-0.186039287,0.852535628,loss,ns,0.000100198,0.0000346,2.896371303,0.004043546,pos,ns,-0.005350829,0.010134965,-0.527957323,0.597906659,neg,ns,0.22336661,0.000823903,0.000348541,2.363866088,0.018701799,pos,ns,0.330608872,Nog,Nog_threeUTR,11,89301066,89301115,89301114,89301115,50,-,TTTTAACGTATAATACTGACCTTTTAATAAGTAAATTAAAACTGGGACCG,3' UTR,11,89300638,89302332,1695,2,Nog-201,1217,Nog-201,Nog,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,36,18121,ENSMUSG00000048616,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
23233,cg12351242,-0.0000082,0.00000273,-2.99959869,0.002922503,loss,ns,-0.0000135,0.00000464,-2.895834218,0.004050287,neg,ns,-0.005086632,0.001360766,-3.738064662,0.000220779,neg,ns,3.656041813,0.0000893,0.0000468,1.908732533,0.05721991,pos,ns,0.928700938,Eri3,Eri3_Intron,4,117576356,117576405,117576404,117576405,50,+,CCAAATGCCAAAGATGACCCGAAGCACAAAGCAACTGACAAACAAGTCCG,"Intron (Eri3-201/Eri3, intron 3 of 8)",4,117550365,117674297,123933,1,Eri3-201,25991,Eri3-201;Eri3-205;Eri3-206,Eri3;Eri3;Eri3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,82,97,140546,ENSMUSG00000033423,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3762,cg03206445,0.0000949,0.00000673,14.10049456,3.17E-35,gain,yes,-0.0000331,0.0000114,-2.895473242,0.004054823,neg,ns,0.001765423,0.003351073,0.526823303,0.598693062,pos,ns,0.222795775,0.0000422,0.000115243,0.365830781,0.714740861,pos,ns,0.224530444,Grin1,Grin1_threeUTR,2,25292108,25292157,25292156,25292157,50,+,GATATCAGTGGGATGGTACTGCTGCAAAATAGAAATACACAGACAAGGCG,3' UTR,2,25291181,25319095,27915,2,Grin1-203,26938,Grin1-203;Grin1-204;Grin1-207;Grin1-208;Grin1-201;Grin1-202;Grin1-206;Grin1-205;Grin1-209;Grin1-210;Lrrc26-201;Tmem210-201;Tmem210-202,Grin1;Grin1;Grin1;Grin1;Grin1;Grin1;Grin1;Grin1;Grin1;Grin1;Lrrc26;Tmem210;Tmem210,0;0;0;0;0;0;0;0;0;0;2193;3963;3907,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,7,14810,ENSMUSG00000026959,conserved gene and region,2,25292156,25292479,324,*,324,37,0.740740741,0.836216518,0.114197531,9.84E-31,CpGisland,TRUE,NA,NRS
24120,cg26227545,0.0000519,0.0000123,4.226931022,0.0000312,gain,ns,0.0000604,0.0000209,2.894617862,0.004065592,pos,ns,0.014295998,0.00610949,2.339965941,0.019919763,pos,ns,1.700715843,-0.00011597,0.000210105,-0.551963354,0.581371149,neg,ns,0.600281072,Galnt2l,Galnt2l_Intron,8,122742650,122742699,122742698,122742699,50,+,GCCTTGAAATTAGCGAGGTAGAATGCTTGGGCTAATTATGCATTCAAACG,"Intron (Galnt2l-201/Galnt2l, intron 1 of 15)",8,119910841,124345722,4434882,1,Galnt2l-201,2831809,Galnt2l-201,Galnt2l,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,28,,NA,mapped to different genes,8,122742642,122742867,226,*,226,16,0.566371681,0.884756545,0.07079646,3.66E-10,CpGisland,TRUE,U13,Hc-P
26300,cg09402653,-0.00001,0.00000626,-1.600317732,0.110546692,loss,ns,-0.0000308,0.0000106,-2.894429784,0.004067963,neg,ns,0.014122715,0.003116939,4.530956511,0.00000839,pos,ns,5.076158349,-0.00061743,0.000107191,-5.760080476,2.03E-08,neg,yes,0.871268086,Ralgapa2,Ralgapa2_Intron,2,146324952,146325001,146325000,146325001,50,+,TGTACCAAATGGCTGAGAATTAATCTCTGCTGACTAGCTGTAATCTAACG,"Intron (Ralgapa2-202/Ralgapa2, intron 37 of 40)",2,146239879,146512004,272126,2,Ralgapa2-202,187003,Ralgapa2-202;Ralgapa2-211;Ralgapa2-210;Ralgapa2-205;Ralgapa2-208,Ralgapa2;Ralgapa2;Ralgapa2;Ralgapa2;Ralgapa2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,26,241694,ENSMUSG00000037110,conserved gene and region,2,146325000,146325095,96,*,96,8,0.65625,0.775757576,0.083333333,0.00000859,CpGisland,TRUE,U10,Tr-S
16498,cg06892279,-0.00000409,0.00000432,-0.946774631,0.344491038,loss,ns,-0.0000212,0.00000734,-2.894344469,0.004069039,neg,ns,-0.008254826,0.002150721,-3.838166708,0.000150248,neg,ns,3.823191671,0.000150298,0.000074,2.032068142,0.042999104,pos,ns,0.888965588,Sfxn5,Sfxn5_Intron,6,85218357,85218406,85218405,85218406,50,+,AAAATATAACATCCCAGCAATCTTACCATGAGGTGTAACATAACCCTTCG,"Intron (Sfxn5-201/Sfxn5, intron 13 of 13)",6,85213049,85333422,120374,2,Sfxn5-201,115016,Sfxn5-201,Sfxn5,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,9,94282,ENSMUSG00000033720,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20067,cg10664254,-0.00000397,0.00000481,-0.825646193,0.409639757,loss,ns,-0.0000237,0.00000817,-2.89384699,0.004075319,neg,ns,0.005539687,0.002394344,2.313655775,0.021340488,pos,ns,1.670795654,-0.000222935,0.0000823,-2.707453705,0.007156243,neg,ns,0.880890162,Hdac8,Hdac8_Exon,X,102402604,102402653,102402652,102402653,50,+,GAGGATAGTGTTTTCCCTAGGATGACCCCGGTCAAGTATGTCCAGCATCG,"Exon (Hdac8-201/Hdac8, exon 9 of 11)",20,102284639,102505359,220721,2,Hdac8-201,102706,Hdac8-201;Hdac8-205;Hdac8-203,Hdac8;Hdac8;Hdac8,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,7,70315,ENSMUSG00000067567,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26804,cg04046171,-0.000000593,0.00000462,-0.128515115,0.897824672,loss,ns,0.0000227,0.00000784,2.893609938,0.004078314,pos,ns,0.000512455,0.002298097,0.222990961,0.823689401,pos,ns,0.084236523,-0.0000737,0.000079,-0.932160694,0.351978894,neg,ns,0.843173567,Kcnab2,Kcnab2_Exon,4,152425606,152425655,152425654,152425655,50,+,GATACTTCATGCCTGTGCGCTGGGCGGTGCAGCCGTCCAGGGAAAGGCCG,"Exon (Kcnab2-217/Kcnab2, exon 2 of 16)",4,152390742,152448840,58099,2,Kcnab2-206,23185,Kcnab2-206;Kcnab2-208;Kcnab2-201;Kcnab2-218;Kcnab2-217;Kcnab2-202;Kcnab2-203;Kcnab2-207;Kcnab2-209;Kcnab2-210;Kcnab2-204;Kcnab2-213;Kcnab2-214;Kcnab2-211;Kcnab2-205;Kcnab2-215,Kcnab2;Kcnab2;Kcnab2;Kcnab2;Kcnab2;Kcnab2;Kcnab2;Kcnab2;Kcnab2;Kcnab2;Kcnab2;Kcnab2;Kcnab2;Kcnab2;Kcnab2;Kcnab2,0;0;0;0;0;0;0;-2862;0;0;0;0;0;-3733;-3772;23086,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,16498,ENSMUSG00000028931,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12603,cg04149449,0.0000235,0.00000359,6.54042603,2.53E-10,gain,yes,-0.0000176,0.00000609,-2.893462166,0.004080182,neg,ns,0.000498608,0.001785227,0.279296746,0.780203347,pos,ns,0.107792191,-0.0000404,0.0000614,-0.658711937,0.510569709,neg,ns,0.895668466,Zfp609,Zfp609_Exon,9,65795200,65795249,65795248,65795249,50,+,CCTCCTTTGAGCCTGACATTTCCAGTTTCTGCTGGTCCTTTTCCAGATCG,"Exon (Zfp609-201/Zfp609, exon 2 of 10)",9,65692391,65827564,135174,2,Zfp609-201,32315,Zfp609-201;Zfp609-203,Zfp609;Zfp609,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,10,214812,ENSMUSG00000040524,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18582,cg11155697,0.000027,0.00000749,3.602741165,0.000366645,gain,ns,0.0000368,0.0000127,2.892851776,0.004087908,pos,ns,0.000863591,0.003728781,0.231601554,0.8170003,pos,ns,0.087777784,0.000112557,0.000128232,0.877760759,0.38075333,pos,ns,0.169178433,Hoxb5,Hoxb5_Exon,11,96303376,96303425,96303424,96303425,50,+,GTAACCATAGAGCATGAATTACCTCTTGAGGTCATCAGCGAGAATTTACG,Promoter (<=1kb),11,96303336,96306121,2786,1,Hoxb5-202,40,Hoxb5-202;Hoxb5-201;Hoxb6-202;Hoxb6-201,Hoxb5;Hoxb5;Hoxb6;Hoxb6,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,22,34,15413,ENSMUSG00000038700,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
4101,cg07316088,-0.0000178,0.00000757,-2.352598328,0.019267607,loss,ns,0.0000372,0.0000129,2.892239154,0.004095675,pos,ns,0.001864008,0.003768931,0.494572241,0.621252407,pos,ns,0.206731916,0.0000255,0.000129613,0.196861317,0.844065067,pos,ns,0.795540109,Gm45647,Gm45647_Intergenic_downstream,8,26804361,26804410,26804409,26804410,50,+,AACAAATAGTGACAGATTGCTAACACGTTACAGTGAAAATTACCAACACG,Distal Intergenic,8,26780315,26780509,195,1,Gm45647-201,24046,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,62,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15685,cg24040066,-0.0000429,0.0000062,-6.924977405,2.52E-11,loss,yes,0.0000304,0.0000105,2.892180601,0.004096418,pos,ns,0.005817199,0.00308426,1.886092399,0.060217155,pos,ns,1.220279768,-0.000114074,0.000106067,-1.075488089,0.282992585,neg,ns,0.546999454,Gm14741,Gm14741_Intergenic_upstream,X,82815128,82815177,82815128,82815129,50,-,CGAGCTCTTCAAACTCTGCAAACAGTGTTGCTTTTACAGAATGGATTTTA,Distal Intergenic,20,82757430,82758438,1009,2,Gm14741-201,-56739,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,11,100415954,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26319,cg22142824,0.0000124,0.00000823,1.50306564,0.133840124,gain,ns,0.0000404,0.000014,2.891969419,0.004099099,pos,ns,0.004815772,0.00409592,1.175748776,0.240597448,pos,ns,0.618708983,-0.0000562,0.000140858,-0.398973506,0.690187419,neg,ns,0.819050026,Gm14111,Gm14111_Intergenic_downstream,2,146723296,146723345,146723344,146723345,50,+,GTCATTCACCGGTGGCAAATGCTGTATAAATGGAATGATGATCAGGCCCG,Distal Intergenic,2,146754707,146755705,999,2,Gm14111-201,32360,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,15,17,668918,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1766,cg14182445,-0.0000189,0.0000118,-1.605394738,0.109425134,loss,ns,0.000058,0.00002,2.891814583,0.004101065,pos,ns,0.020750802,0.005871476,3.534171358,0.000471375,pos,ns,3.326633902,-0.000721701,0.00020192,-3.574199769,0.000407259,neg,ns,0.774642008,Foxp2,Foxp2_Intron,6,15123014,15123063,15123062,15123063,50,+,TTCTTTTAATAATTGAATCAACATGCAGATACATAATAAGCATAAAAGCG,"Intron (Foxp2-207/Foxp2, intron 3 of 18)",6,14901349,15441977,540629,1,Foxp2-207,221665,Foxp2-207;Foxp2-213;Foxp2-208;Foxp2-211;Foxp2-217,Foxp2;Foxp2;Foxp2;Foxp2;Foxp2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,38,65,114142,ENSMUSG00000029563,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24285,cg22531224,0.00000284,0.000000879,3.231136179,0.001365525,gain,ns,-0.00000432,0.00000149,-2.891715469,0.004102325,neg,ns,-0.00034469,0.000437289,-0.788244481,0.431156052,neg,ns,0.365365514,-0.0000087,0.000015,-0.578760508,0.56317104,neg,ns,0.027238054,Pou3f1,Pou3f1_Intron,4,124478186,124478235,124478234,124478235,50,-,TGAGGACAGCTTGTTTGGAAATCCCATTAACGGGTTATTTATGGGGCTCG,"Intron (1700057H15Rik-202/1700057H15Rik-202, intron 2 of 3)",4,124656807,124660655,3849,1,Pou3f1-201,-178621,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,43,85,18991,ENSMUSG00000090125,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
13950,cg21087155,0.000138744,0.000016,8.66042882,2.63E-16,gain,yes,0.0000787,0.0000272,2.890412113,0.004118918,pos,ns,0.045023023,0.007973529,5.646561759,0.000000037,pos,ns,7.431635607,-0.000991982,0.000274209,-3.61761437,0.00034702,neg,ns,0.34220473,Slc6a8,Slc6a8_fiveUTR,X,73673525,73673574,73673525,73673526,50,+,CGCCCCCGGGCCCCCGACACACATGAGATTCTTCAGGCTCACTTTCAAGT,Promoter (<=1kb),20,73673150,73682502,9353,1,Slc6a8-201,375,Slc6a8-201;Slc6a8-204;Slc6a8-206;Slc6a8-203;Slc6a8-205;Slc6a8-210;Slc6a8-213;Slc6a8-202;Slc6a8-209;Slc6a8-212,Slc6a8;Slc6a8;Slc6a8;Slc6a8;Slc6a8;Slc6a8;Slc6a8;Slc6a8;Slc6a8;Slc6a8,0;0;0;0;0;0;0;0;-3485;-4580,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,4,102857,ENSMUSG00000019558,mapped to different genes,X,73672917,73674047,1131,*,1131,123,0.714412025,0.852345416,0.108753316,5.71E-98,CpGisland,TRUE,U2,Pr-W
27812,cg15476781,0.00000464,0.00000358,1.29554185,0.196097236,gain,ns,0.0000176,0.00000609,2.890340361,0.004119834,pos,ns,0.001033313,0.001783971,0.579220826,0.562860828,pos,ns,0.249598975,-0.00000221,0.0000614,-0.035970246,0.971329235,neg,ns,0.912420862,Esrrg,Esrrg_Intron,1,188000476,188000525,188000524,188000525,50,-,CCTTTCAACCTCTGATTAAAATGTAACATTGACTACAGGATTATAGAGCG,"Intron (Esrrg-204/Esrrg, intron 3 of 3)",1,187608791,188043502,434712,1,Esrrg-204,391685,Esrrg-204;Esrrg-203;Esrrg-201;Esrrg-202,Esrrg;Esrrg;Esrrg;Esrrg,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,60,26381,ENSMUSG00000026610,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22736,cg14401402,0.0000454,0.00000745,6.085109709,3.43E-09,gain,yes,-0.0000366,0.0000127,-2.889938131,0.004124968,neg,ns,0.003694644,0.00371038,0.995759,0.320143864,pos,ns,0.494654818,-0.000114286,0.0001276,-0.895660998,0.371128785,neg,ns,0.889862931,Meis2,Meis2_Exon,2,115866227,115866276,115866275,115866276,50,-,CTCATGTCGGAAGTCAGTAGGCACATGTAAAAAATAATCAAAACACACCG,"Exon (Meis2-207/Meis2, exon 4 of 4)",2,115863064,116065047,201984,2,Meis2-201,198771,Meis2-201;Meis2-203;Meis2-205;Meis2-206;Meis2-204;Meis2-202;Meis2-208;Meis2-219;Meis2-216;Meis2-218;Meis2-214;Meis2-207;Meis2-215,Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,15,97,17536,ENSMUSG00000027210,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13249,cg25654577,-0.00000485,0.00000293,-1.654552533,0.099027378,loss,ns,0.0000144,0.00000498,2.888571212,0.00414246,pos,ns,-0.001937705,0.001459821,-1.327357955,0.185367002,neg,ns,0.731967575,0.0000751,0.0000502,1.496093924,0.135646534,pos,ns,0.946009791,Gm18745,Gm18745_Intergenic_upstream,9,69845207,69845256,69845207,69845208,50,+,CGTGGTATCAAAGGACACAATTTTGATAACTGGGCTTGAAAGAATATTTG,Distal Intergenic,9,69792604,69793151,548,2,Gm18745-201,-52056,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,6,100417660,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8659,cg06721611,-0.00000726,0.00000387,-1.87695401,0.06146346,loss,ns,-0.000019,0.00000657,-2.88830318,0.004145898,neg,ns,-0.005903669,0.00192574,-3.065663149,0.002362996,neg,ns,2.626537096,0.00018209,0.0000662,2.749517098,0.006318589,pos,ns,0.912743862,Btrc,Btrc_Intron,19,45494108,45494157,45494108,45494109,50,+,CGATCCGGGGAAATGATGATCCTCACTCGGTAATTAACTAAATGAGAAAG,"Intron (Btrc-204/Btrc, intron 1 of 2)",19,45363734,45507736,144003,1,Btrc-204,130374,Btrc-204;Btrc-201;Btrc-210;Btrc-202;Btrc-203;Btrc-209,Btrc;Btrc;Btrc;Btrc;Btrc;Btrc,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,63,98,12234,ENSMUSG00000025217,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6915,cg05053064,-0.0000016,0.00000182,-0.882118752,0.378396065,loss,ns,0.00000892,0.00000309,2.887019002,0.004162405,pos,ns,0.001761978,0.000904925,1.947099536,0.052425608,pos,ns,1.280456523,-0.0000524,0.0000311,-1.682996471,0.093382558,neg,ns,0.975225204,Rims2,Rims2_Exon,15,39534920,39534969,39534920,39534921,50,+,CGCTCCAGATCCACTGAACGTCCTGATACAAACCTCATGAGGTCGATGCC,"Exon (Rims2-205/Rims2, exon 17 of 26)",15,39198332,39681940,483609,1,Rims2-202,336588,Rims2-202;Rims2-205;Rims2-201;Rims2-206,Rims2;Rims2;Rims2;Rims2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,16,19,116838,ENSMUSG00000037386,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24563,cg16871332,-0.00000577,0.00000798,-0.722844201,0.470320598,loss,ns,0.0000391,0.0000136,2.886181569,0.004173202,pos,ns,0.004434522,0.003972369,1.116341946,0.265140329,pos,ns,0.576524209,-0.000192396,0.000136609,-1.408362961,0.160025729,neg,ns,0.857865602,Fgf6,Fgf6_Exon,6,127015574,127015623,127015622,127015623,50,-,GAGGCAAGGTGGATGGCCCTGGGACAGAAACTGTTCATCACTATGTCCCG,Promoter (<=1kb),6,127015586,127028187,12602,1,Fgf6-201,0,Fgf6-201,Fgf6,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,5,14177,ENSMUSG00000000183,conserved gene and region,6,127015622,127015726,105,*,105,11,0.695238095,0.868421053,0.104761905,6.39E-09,CpGisland,TRUE,U15,NS
16494,cg04691296,-0.0000111,0.00000244,-4.53575542,0.00000822,loss,ns,-0.000012,0.00000414,-2.886048177,0.004174924,neg,ns,0.002718543,0.001213243,2.240723461,0.02575191,pos,ns,1.589190559,-0.000238435,0.0000417,-5.714666947,2.58E-08,neg,yes,0.942086133,Appbp2,Appbp2_Exon,11,85201606,85201655,85201654,85201655,50,-,GCCAAATACACTGCATGTTTAATTAACTGTTCTGCCTTCTTAAATTCACG,"Exon (Appbp2-201/Appbp2, exon 7 of 13)",11,85187262,85235130,47869,2,Appbp2-201,33475,Appbp2-201,Appbp2,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,66884,ENSMUSG00000018481,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4689,cg23626248,-0.0000281,0.00000823,-3.421531828,0.00070623,loss,ns,0.0000403,0.000014,2.885841435,0.004177595,pos,ns,-0.004304565,0.004093791,-1.051486116,0.293854334,neg,ns,0.5318679,0.00023166,0.000140785,1.64548366,0.100883607,pos,ns,0.599075449,Mecom,Mecom_Intron,3,30106733,30106782,30106733,30106734,50,+,CGAAACCAAGAGTGAGCAGAAAAAATAAACACGAACAGAGGCTGCAGTGT,"Intron (Mecom-212/Mecom, intron 1 of 15)",3,29951299,30509733,558435,2,Mecom-212,402951,Mecom-212;Mecom-203;Mecom-210;Mecom-213;Mecom-207;Mecom-208;Mecom-211,Mecom;Mecom;Mecom;Mecom;Mecom;Mecom;Mecom,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,80,14013,ENSMUSG00000027684,conserved gene and region,3,30106598,30106734,137,*,137,14,0.613138686,1.097254005,0.102189781,3.95E-11,CpGisland,TRUE,U9,En-Pp
17065,cg04019195,-0.00000572,0.0000035,-1.635320734,0.102996759,loss,ns,-0.0000171,0.00000594,-2.885172079,0.004186251,neg,ns,-0.001597339,0.001740957,-0.917506272,0.359590665,neg,ns,0.444191591,-0.0000867,0.0000599,-1.448356776,0.148527962,neg,ns,0.909057739,Mef2d,Mef2d_Exon,3,88168282,88168331,88168330,88168331,50,+,CGCCCAGCCCCAGAGCCTGAGGCTGAGGGCTCAGCTGTGAAGAGGATGCG,"Exon (Mef2d-201/Mef2d, exon 10 of 11)",3,88142372,88172086,29715,1,Mef2d-201,25910,Mef2d-201;Mef2d-204;Mef2d-202;Mef2d-203;Mef2d-205;Mef2d-207,Mef2d;Mef2d;Mef2d;Mef2d;Mef2d;Mef2d,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,10,17261,ENSMUSG00000001419,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20815,cg14553312,0.0000111,0.00000477,2.337913887,0.02002751,gain,ns,0.0000234,0.0000081,2.884658231,0.004192908,pos,ns,0.004082677,0.002372104,1.72112044,0.086226683,pos,ns,1.064358319,0.0000817,0.0000816,1.001252458,0.317485668,pos,ns,0.119773476,Ndfip2,Ndfip2_Intergenic_downstream,14,105483368,105483417,105483416,105483417,50,+,GCTTTCACCCTGCTGAAAAGATTCAAAAGGCATCGCTTCCTGCACCAGCG,Distal Intergenic,14,105294546,105308869,14324,1,Ndfip2-203,188822,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,7,76273,ENSMUSG00000053253,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
888,cg01911033,0.0000239,0.0000166,1.443946851,0.149763779,gain,ns,0.0000812,0.0000282,2.884498099,0.004194984,pos,ns,0.012775632,0.008247373,1.549054732,0.122388822,pos,ns,0.912258247,-0.0000881,0.000283626,-0.310466058,0.756415197,neg,ns,0.484474222,Gm13220,Gm13220_Intron,2,9433365,9433414,9433413,9433414,50,-,TTAATTCACCGATTGGCTGATAAGCTTGAAGCCAAAGACTGATTTACACG,"Intron (Gm13219-201/Gm13219-201, intron 2 of 3)",2,9575836,9576343,508,1,Gm13220-201,-142471,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,8,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9461,cg02244834,0.0000167,0.0000117,1.420563723,0.156448633,gain,ns,0.0000575,0.0000199,2.884248303,0.004198225,pos,ns,0.003266043,0.00583979,0.559274007,0.576378551,pos,ns,0.239292189,0.000334944,0.00020083,1.66779996,0.096365215,pos,ns,0.677009623,Gm46453,Gm46453_Intron,14,48812906,48812955,48812954,48812955,50,-,TCTGCCTGTTTGAAATACCTTAGTCAGGAGAAGTACCACAAACTGAACCG,"Intron (Otx2os1-206/Otx2os1-206, intron 2 of 4)",14,48834168,48834534,367,2,Gm46453-201,21628,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,9,108168159,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17332,cg12649161,0.00000404,0.00000407,0.992946439,0.32151046,gain,ns,-0.0000199,0.00000691,-2.884032597,0.004201025,neg,ns,-0.00548016,0.002023289,-2.708540677,0.007133393,neg,ns,2.146703857,0.0000774,0.0000696,1.111976837,0.267009717,pos,ns,0.808133922,Agap1,Agap1_Intron,1,89751103,89751152,89751103,89751104,50,-,CGGAGATTAATGAGGCCTAAGAGTGCATTAGGAACAGTGACAAAGGTTTG,"Intron (Agap1-201/Agap1, intron 11 of 17)",1,89454806,89897617,442812,1,Agap1-201,296297,Agap1-201;Agap1-204;Agap1-202,Agap1;Agap1;Agap1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,29,347722,ENSMUSG00000055013,conserved gene and region,1,89750969,89751104,136,*,136,13,0.661764706,0.901580826,0.095588235,5.64E-10,CpGisland,TRUE,U11,Tr-P
12226,cg17604804,-0.00000881,0.00000765,-1.151560404,0.25038912,loss,ns,-0.0000375,0.000013,-2.883984979,0.004201644,neg,ns,-0.004600311,0.003805574,-1.208835184,0.227647376,neg,ns,0.64273735,-0.000219283,0.000130873,-1.675533244,0.09483795,neg,ns,0.84689507,Ptch1,Ptch1_Intron,13,63525486,63525535,63525486,63525487,50,-,CGTCTGTGTGCAGTTAACCTCTGTTGTTAACACTGAAGGAAATGCCACCC,"Intron (Ptch1-201/Ptch1, intron 16 of 22)",13,63508328,63565735,57408,2,Ptch1-201,40200,Ptch1-201;Ptch1-204;Ptch1-206;Ptch1-202,Ptch1;Ptch1;Ptch1;Ptch1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,36,19206,ENSMUSG00000021466,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9123,cg17662507,0.00000196,0.00000964,0.203322069,0.839016702,gain,ns,-0.0000472,0.0000164,-2.883944252,0.004202173,neg,ns,-0.010875787,0.004797455,-2.266991026,0.024079317,neg,ns,1.618355829,-0.00000772,0.000164984,-0.046770199,0.962726496,neg,ns,0.858472689,Samd4,Samd4_Exon,14,47052837,47052886,47052885,47052886,50,-,TTTTTTTTTCCAGTTCTCTCAGGCCAGGCACACCACAGCCCTTTGAAACG,"Exon (Samd4-201/Samd4, exon 4 of 13)",14,46882854,47103150,220297,1,Samd4-201,169983,Samd4-201;Samd4-211;Samd4-202;Samd4-206;Samd4-203,Samd4;Samd4;Samd4;Samd4;Samd4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,16,74480,ENSMUSG00000021838,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25458,cg12663290,-0.0000706,0.0000118,-5.970612482,6.47E-09,loss,yes,0.0000579,0.0000201,2.883785062,0.004204241,pos,ns,-0.007494295,0.005881508,-1.274213037,0.203542313,neg,ns,0.691345295,0.000353112,0.000202265,1.745793298,0.08183755,pos,ns,0.683132443,Ephb2,Ephb2_Intron,4,136761859,136761908,136761907,136761908,50,-,AGGCTTAGAAAGGCTTAAACTGTTAAATGCATAAACTTCCTCAATCAACG,"Intron (Ephb2-202/Ephb2, intron 3 of 15)",4,136647539,136835988,188450,2,Ephb2-202,74080,Ephb2-202;Ephb2-201;Ephb2-203,Ephb2;Ephb2;Ephb2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,15,13844,ENSMUSG00000028664,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9933,cg21709655,0.0000984,0.00000757,12.99440193,4.07E-31,gain,yes,-0.0000371,0.0000129,-2.883270274,0.004210936,neg,ns,0.01031188,0.003769509,2.735603235,0.006585307,pos,ns,2.181423994,-0.000286871,0.000129633,-2.21294418,0.027629726,neg,ns,0.149660183,Slc17a6,Slc17a6_Exon,7,51625456,51625505,51625456,51625457,50,+,CGCTGCAACCTGGGCGTGGCCATTGTGGACATGGTCAACAACAGCACCAT,"Exon (Slc17a6-201/Slc17a6, exon 2 of 12)",7,51622006,51671119,49114,1,Slc17a6-201,3450,Slc17a6-201;Slc17a6-203;Slc17a6-202;Slc17a6-204,Slc17a6;Slc17a6;Slc17a6;Slc17a6,0;0;0;-3975,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,4,140919,ENSMUSG00000030500,conserved gene and region,7,51625255,51625562,308,*,308,23,0.594155844,0.846153846,0.074675325,6.78E-15,CpGisland,TRUE,U13,Hc-P
19205,cg14028528,-0.000000796,0.00000303,-0.262840921,0.79284779,loss,ns,0.0000148,0.00000514,2.883262234,0.004211041,pos,ns,0.000916003,0.001506793,0.60791564,0.54368852,pos,ns,0.264649837,-0.0000974,0.0000518,-1.879739466,0.061081322,neg,ns,0.949825543,Kank4,Kank4_Exon,4,98777049,98777098,98777097,98777098,50,+,TGCACGGAAGCCATAGTCTTTCTTTTTCATTATGGATTTAAGGCTGGTCG,"Exon (Kank4-201/Kank4, exon 4 of 10)",4,98754898,98817537,62640,2,Kank4-201,40439,Kank4-201,Kank4,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,242553,ENSMUSG00000035407,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20843,cg02865068,0.000026,0.00000287,9.042442774,1.71E-17,gain,yes,-0.0000141,0.00000488,-2.882686757,0.004218536,neg,ns,0.00075381,0.001429464,0.527337523,0.59833641,pos,ns,0.223054569,0.0000654,0.0000492,1.329459019,0.18467407,pos,ns,0.043473306,Pax6,Pax6_Exon,2,105660232,105660281,105660232,105660233,50,+,CGCTTCTCCGGTTCGAGTTATGCCATCAAGCTAATATATTGTGACTGCTC,Promoter (8-9kb),2,105668900,105697364,28465,1,Pax6-206,-8619,NA,NA,NA,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,31,78,18508,ENSMUSG00000027168,mapped to different genes,2,105660188,105660246,59,*,59,8,0.762711864,0.955465587,0.13559322,0.000000192,CpGisland,TRUE,U13,Hc-P
16190,cg21654796,0.0000161,0.00000251,6.395400505,5.89E-10,gain,yes,-0.0000123,0.00000427,-2.882343653,0.004223011,neg,ns,0.003613191,0.001250607,2.889150551,0.004135038,pos,ns,2.383520471,-0.000140313,0.000043,-3.262466905,0.001227672,neg,ns,0.079944329,Vsx2,Vsx2_Exon,12,84569959,84570008,84570007,84570008,50,+,GGGAAGCGCTGAGCAAGCCCAAATCCGAGACAGTGGCCAAGAGTACCTCG,Promoter (<=1kb),12,84569762,84595457,25696,1,Vsx2-201,197,Vsx2-201;Vsx2-202,Vsx2;Vsx2,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,20,12677,ENSMUSG00000021239,conserved gene and region,12,84569841,84570039,199,*,199,16,0.693467337,0.689625298,0.08040201,5.23E-11,CpGisland,TRUE,U13,Hc-P
22330,cg11712989,-0.0000184,0.0000114,-1.618728851,0.106522525,loss,ns,0.0000557,0.0000193,2.882310764,0.00422344,pos,ns,0.003454236,0.005662059,0.610067093,0.542264302,pos,ns,0.265788984,-0.0000545,0.000194718,-0.279926176,0.779720835,neg,ns,0.817155615,Dach2,Dach2_Intron,X,113304440,113304489,113304440,113304441,50,+,CGGCTCTGTGAGGCTGCAGATGTTGCCCTGTGTTTAATAAATCAATGAGA,"Intron (Dach2-204/Dach2, intron 2 of 15)",20,113297510,113836386,538877,1,Dach2-204,6930,Dach2-204;Dach2-203;Dach2-202;Dach2-208;Dach2-205;Dach2-201;Dach2-207,Dach2;Dach2;Dach2;Dach2;Dach2;Dach2;Dach2,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,4,93837,ENSMUSG00000025592,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3257,cg12458581,-0.00000513,0.0000049,-1.047809024,0.295542845,loss,ns,0.000024,0.00000832,2.881588115,0.00423288,pos,ns,0.011220259,0.002437901,4.602426472,0.0000061,pos,ns,5.214805297,-0.000307832,0.0000838,-3.671691891,0.000283675,neg,ns,0.890146764,Ogfrl1,Ogfrl1_fiveUTR,1,23378761,23378810,23378761,23378762,50,-,CGAAGATTGCTCAAGTCATTTTGATATCGGATATCTTTGAAGTTCTGCTA,5' UTR,1,23366424,23383175,16752,2,Ogfrl1-201,4365,Ogfrl1-201;Ogfrl1-202;Ogfrl1-203,Ogfrl1;Ogfrl1;Ogfrl1,0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,1,70155,ENSMUSG00000026158,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13326,cg06937916,0.00000943,0.00000452,2.089026039,0.037520642,gain,ns,0.0000221,0.00000767,2.880637237,0.004245331,pos,ns,0.0027305,0.002247671,1.214813247,0.225361816,pos,ns,0.647119666,-0.0000013,0.0000773,-0.016827051,0.986585414,neg,ns,0.909237195,Gm44690,Gm44690_Intergenic_upstream,7,70104675,70104724,70104675,70104676,50,+,CGCCAGCCTGTAATTTATAAAAGATACGCGCCATGTGGTGGAGCACTAAA,Distal Intergenic,7,69883979,69884360,382,2,Gm44690-201,-220315,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,15,24,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4211,cg25278451,-0.00000358,0.00000135,-2.656094252,0.008314091,loss,ns,0.0000066,0.00000229,2.880295409,0.004249815,pos,ns,0.001522631,0.000671127,2.268767914,0.023969672,pos,ns,1.620337918,-0.0000656,0.0000231,-2.841415991,0.004788897,neg,ns,0.967678293,Gm7729,Gm7729_Intergenic_downstream,18,27629619,27629668,27629619,27629620,50,+,CGCTACTTCACAGATTACTTGGAGAGAAAGTCTCTCAGCGTGCTTGAAGA,Distal Intergenic,18,27598644,27599756,1113,1,Gm7729-201,30975,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,22,665646,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24097,cg23946873,0.0000975,0.00000723,13.49541846,5.74E-33,gain,yes,-0.0000354,0.0000123,-2.880068063,0.004252799,neg,ns,0.001742995,0.003596442,0.48464432,0.628270924,pos,ns,0.201853039,0.000277874,0.000123681,2.246689245,0.025363423,pos,ns,0.363629595,Zic2,Zic2_Intron,14,122477665,122477714,122477665,122477666,50,-,CGAGGTGCGAGACAAGCTTTTAACAAGGTTTAAAATTTGAGAAATTTATT,"Intron (Zic2-201/Zic2, intron 1 of 2)",14,122475435,122479852,4418,1,Zic2-201,2230,Zic2-201;Zic2-202,Zic2;Zic2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,7,22772,ENSMUSG00000061524,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
13493,cg17298239,0.000436599,0.0000326,13.37558816,1.60E-32,gain,yes,-0.000159699,0.0000555,-2.879869641,0.004255406,neg,ns,-0.002149776,0.016246014,-0.132326357,0.894812007,neg,ns,0.048268197,-0.000307096,0.000558699,-0.549661862,0.582947081,neg,ns,0.378445272,Dlgap1,Dlgap1_Exon,17,70818163,70818212,70818163,70818164,50,-,CGCCAGAACTCGGCCACCGAGAGCGCCGAGAGCATCGAGATCTACATCCC,"Exon (Dlgap1-207/Dlgap1, exon 14 of 14)",17,69969073,70821413,852341,1,Dlgap1-207,849090,Dlgap1-207;Dlgap1-201;Dlgap1-210;Dlgap1-214;Dlgap1-208;Dlgap1-218;Dlgap1-219;Dlgap1-206;Dlgap1-211;Dlgap1-209;Dlgap1-202;Dlgap1-220,Dlgap1;Dlgap1;Dlgap1;Dlgap1;Dlgap1;Dlgap1;Dlgap1;Dlgap1;Dlgap1;Dlgap1;Dlgap1;Dlgap1,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,224997,ENSMUSG00000003279,conserved gene and region,17,70818028,70818412,385,*,385,46,0.716883117,0.969879518,0.11948052,4.17E-39,CpGisland,TRUE,U3,Pr-B
22006,cg01740828,0.0000132,0.00000295,4.466294247,0.0000112,gain,ns,-0.0000145,0.00000502,-2.879841059,0.004255781,neg,ns,-0.004634415,0.001470365,-3.151880826,0.001780808,neg,ns,2.749383022,0.0000196,0.0000506,0.387925536,0.698337379,pos,ns,0.851914035,Map4,Map4_threeUTR,9,110081840,110081889,110081888,110081889,50,+,GATTGAGACCTACAGGCTGACGTTCCGGGCAAATGCCAGGGCCCGCACCG,3' UTR,9,109931460,110083955,152496,1,Map4-201,150380,Dhx30-201;Dhx30-215;Dhx30-219;Dhx30-212;Dhx30-218;Dhx30-220;Dhx30-214;Dhx30-203;Dhx30-204;Dhx30-202;Dhx30-224;Dhx30-226;Dhx30-209;Map4-201;Map4-205;Map4-204;Map4-214;Map4-203;Map4-213;Map4-215;Map4-211;Map4-212;Map4-208;Map4-217;Map4-216,Dhx30;Dhx30;Dhx30;Dhx30;Dhx30;Dhx30;Dhx30;Dhx30;Dhx30;Dhx30;Dhx30;Dhx30;Dhx30;Map4;Map4;Map4;Map4;Map4;Map4;Map4;Map4;Map4;Map4;Map4;Map4,19198;0;0;0;3102;3161;0;0;0;0;0;3626;5565;0;0;0;0;0;0;0;13016;0;4240;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,2,17758,ENSMUSG00000032479,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
936,cg05812312,-0.00000215,0.0000111,-0.194184295,0.846158766,loss,ns,0.0000541,0.0000188,2.879775889,0.004256638,pos,ns,0.00484938,0.005501386,0.88148336,0.378739189,pos,ns,0.421659755,0.00000689,0.000189192,0.03641449,0.970975297,pos,ns,0.16154428,Gata3,Gata3_Promoter,2,9892511,9892560,9892511,9892512,50,-,CGTGGACGTGGAGAATTTTAATTAAATCTTACTGTGGATATAATAACATG,Promoter (2-3kb),2,9874702,9890034,15333,2,Gata3-202,-2526,9230102O04Rik-202;Gata3-202;Gata3-204;Gata3-203,9230102O04Rik;Gata3;Gata3;Gata3,-2971;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,12,21,14462,ENSMUSG00000015619,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
23550,cg20117682,0.0000856,0.0000064,13.37304175,1.63E-32,gain,yes,-0.0000313,0.0000109,-2.879543964,0.004259687,neg,ns,0.002605408,0.003185356,0.817933068,0.414023641,pos,ns,0.38297486,0.000160809,0.000109544,1.467983557,0.14312257,pos,ns,0.183975586,Sp8,Sp8_Promoter,12,118843996,118844045,118843996,118843997,50,-,CGACATGGATGAGACAGATGATATGATTAAGGGGCTGTGGTCGTTTTAAT,Promoter (2-3kb),12,118846329,118852576,6248,1,Sp8-201,-2333,Sp8-201;Sp8-202,Sp8;Sp8,0;-3541,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,27,29,320145,ENSMUSG00000048562,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
16775,cg18393308,-0.0000046,0.00000117,-3.944693411,0.0000989,loss,ns,0.0000057,0.00000198,2.879430854,0.004261175,pos,ns,0.001042811,0.000580421,1.796646853,0.073365098,pos,ns,1.1345105,-0.0000307,0.00002,-1.540110024,0.124553637,neg,ns,0.044115654,Pcbp1,Pcbp1_Exon,6,86525096,86525145,86525144,86525145,50,+,AACTTGCCCAATAGCCTTTCACCTCTGGAGAGCTGGAGTCAATTCCGGCG,"Exon (Pcbp1-201/Pcbp1, exon 1 of 1)",6,86524492,86526321,1830,2,Pcbp1-201,1176,Pcbp1-201,Pcbp1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,14,15,23983,ENSMUSG00000051695,mapped to different genes,6,86525141,86525160,20,*,20,5,0.8,1.666666667,0.25,0.00000436,CpGisland,TRUE,U1,Pr-A
6287,cg17799518,0.000000299,0.00000319,0.093622725,0.925469337,gain,ns,-0.0000156,0.00000542,-2.878754432,0.004270082,neg,ns,0.000385987,0.001586925,0.243229349,0.807988599,pos,ns,0.092594767,-0.000146705,0.0000546,-2.688166627,0.007572813,neg,ns,0.933926691,Tshz3,Tshz3_Intron,7,36731914,36731963,36731914,36731915,50,-,CGTGATGGATTATAAATCATTCAAGATTAAATTAAAAGATAATGCACAAA,"Intron (Tshz3-201/Tshz3, intron 1 of 1)",7,36698118,36773553,75436,1,Tshz3-201,33796,Tshz3-201,Tshz3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,58,243931,ENSMUSG00000021217,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22836,cg06534687,-0.00000214,0.00000538,-0.397895964,0.690980741,loss,ns,-0.0000263,0.00000915,-2.878272352,0.004276441,neg,ns,-0.003266781,0.002679392,-1.219224484,0.223685882,neg,ns,0.650361425,0.0000223,0.0000921,0.242248689,0.808747654,pos,ns,0.903909742,Meis2,Meis2_Intron,2,116002581,116002630,116002581,116002582,50,+,CGATCTCATCAGCTGTTCATGTGACACAGATGGAGAGTGGCTATTAGGAG,"Intron (Meis2-201/Meis2, intron 7 of 11)",2,115863064,116065047,201984,2,Meis2-201,62417,Meis2-201;Meis2-203;Meis2-205;Meis2-206;Meis2-204;Meis2-202;Meis2-216;Meis2-217;Meis2-213,Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,45,97,17536,ENSMUSG00000027210,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6047,cg18899797,0.000017,0.00000687,2.472723356,0.013944935,gain,ns,0.0000336,0.0000117,2.878225434,0.00427706,pos,ns,0.01284244,0.003419913,3.755195198,0.000206827,pos,ns,3.684393787,-0.000206801,0.000117611,-1.758351862,0.079674407,neg,ns,0.573923951,Psd2,Psd2_Exon,18,35913222,35913271,35913222,35913223,50,+,CGGGACTGAAATATTCCTGAGGGAGAAGAACCCTGAGGCTTCAGGGCGGC,"Exon (C330008A17Rik-201/C330008A17Rik-201, exon 1 of 2)",18,35964830,36014712,49883,1,Psd2-201,-51559,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,29,74002,ENSMUSG00000024347,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16506,cg11435847,-0.000017,0.00000293,-5.826237605,1.42E-08,loss,yes,0.0000143,0.00000497,2.87811019,0.004278582,pos,ns,0.003423278,0.001456315,2.350644169,0.019367249,pos,ns,1.712932062,-0.0000933,0.0000501,-1.863643368,0.063317115,neg,ns,0.928867663,Sfxn5,Sfxn5_Intron,6,85237996,85238045,85238044,85238045,50,+,TTTGGGGAGTGTGTGAGCCTGGGAGCGACTGCAGTTCTGGGCTGTGAACG,"Intron (Sfxn5-201/Sfxn5, intron 10 of 13)",6,85213049,85333422,120374,2,Sfxn5-201,95377,Sfxn5-201;Sfxn5-205;Sfxn5-202,Sfxn5;Sfxn5;Sfxn5,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,9,94282,ENSMUSG00000033720,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7079,cg03833577,0.0000255,0.00000728,3.499968976,0.000533535,gain,ns,-0.0000356,0.0000124,-2.877807783,0.004282577,neg,ns,-0.001865918,0.003621572,-0.515223144,0.606764294,neg,ns,0.216979984,-0.0000567,0.000124546,-0.455311237,0.649204071,neg,ns,0.121159737,Zfpm2,Zfpm2_Intron,15,40825477,40825526,40825525,40825526,50,-,TCTGATAGGGCACAAGGATTTGGAGACAGCCCATCTTTCTGCAGAAAACG,"Intron (Zfpm2-202/Zfpm2, intron 3 of 3)",15,40655035,40872723,217689,1,Zfpm2-202,170442,Zfpm2-202;Zfpm2-201;Zfpm2-203,Zfpm2;Zfpm2;Zfpm2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,41,22762,ENSMUSG00000022306,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5026,cg14349785,-0.00000607,0.00000572,-1.061531512,0.28927471,loss,ns,0.000028,0.00000971,2.877547197,0.004286022,pos,ns,0.009091509,0.002846061,3.194418644,0.001545284,pos,ns,2.810991572,-0.000274723,0.0000979,-2.806849627,0.005319622,neg,ns,0.887657704,Dlg1,Dlg1_threeUTR,16,31853836,31853885,31853884,31853885,50,+,ATTTCAGAGCATGTAACTTCTAATGCCAGCGATAGTGAAAGTAGTTACCG,3' UTR,16,31663443,31875129,211687,1,Dlg1-206,190393,Dlg1-206;Dlg1-205;Dlg1-203;Dlg1-209;Dlg1-202;Dlg1-201;Dlg1-204;Dlg1-207;Dlg1-213;Dlg1-214;Dlg1-211,Dlg1;Dlg1;Dlg1;Dlg1;Dlg1;Dlg1;Dlg1;Dlg1;Dlg1;Dlg1;Dlg1,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,8,13383,ENSMUSG00000022770,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15708,cg14110674,-0.0000308,0.0000072,-4.280944579,0.0000248,loss,ns,-0.0000352,0.0000122,-2.877420517,0.004287698,neg,ns,0.005708942,0.003581444,1.594033275,0.1119476,pos,ns,0.950985211,-0.000283514,0.000123166,-2.301892695,0.02200386,neg,ns,0.872570766,Phip,Phip_Exon,9,82945777,82945826,82945825,82945826,50,+,GTTCGATCAAAAGTTACACAGTACACAGATGACAAGTGTCCAAGAATTCG,"Exon (Phip-201/Phip, exon 7 of 40)",9,82866159,82975516,109358,2,Phip-201,29690,Phip-201;Phip-207;Phip-204;Phip-210;Phip-205,Phip;Phip;Phip;Phip;Phip,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,13,83946,ENSMUSG00000032253,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25832,cg10607454,0.0000241,0.0000164,1.466149347,0.143621212,gain,ns,0.0000803,0.0000279,2.877269146,0.004289701,pos,ns,0.025948144,0.008174823,3.1741538,0.001653639,pos,ns,2.781559256,-0.000217836,0.000281131,-0.774854394,0.439016318,neg,ns,0.080573551,Uncx,Uncx_Intergenic_downstream,5,139585601,139585650,139585649,139585650,50,+,TGAAGTGCTTTGTGCTGCCAGTGGAAAGCCGGGTGACCCGCCTCGGCCCG,Distal Intergenic,5,139543898,139545268,1371,1,Uncx-202,41703,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,59,88,22255,ENSMUSG00000029546,conserved gene and region,5,139585354,139585726,373,*,373,27,0.616621984,0.761512287,0.072386059,4.94E-17,CpGisland,TRUE,U13,Hc-P
6896,cg11327853,0.0000112,0.00000583,1.91207477,0.056788187,gain,ns,-0.0000285,0.00000991,-2.877118252,0.004291698,neg,ns,0.00992462,0.002902345,3.419517049,0.000711287,pos,ns,3.147955189,-0.000517615,0.0000998,-5.185932016,0.000000389,neg,yes,0.89110878,Arhgap26,Arhgap26_Exon,18,39357703,39357752,39357751,39357752,50,+,TGTTCTCTCATTGGCTCGGTCCTCTCTTCATGCAGTGTTCAGCCTCCTCG,"Exon (Arhgap26-201/Arhgap26, exon 21 of 23)",18,38993145,39376284,383140,1,Arhgap26-201,364558,Arhgap26-201;Arhgap26-205;Arhgap26-210;Arhgap26-209;Arhgap26-206;Arhgap26-208;Arhgap26-211;Arhgap26-204,Arhgap26;Arhgap26;Arhgap26;Arhgap26;Arhgap26;Arhgap26;Arhgap26;Arhgap26,0;0;0;0;0;0;0;-4831,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,6,71302,ENSMUSG00000036452,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2490,cg08372364,0.0000147,0.00000419,3.507291019,0.000519615,gain,ns,-0.0000205,0.00000712,-2.876691964,0.004297347,neg,ns,-0.007335536,0.00208575,-3.516977787,0.000501721,neg,ns,3.299537455,0.000201527,0.0000717,2.809565213,0.005276072,pos,ns,0.838133721,Klhl6,Klhl6_Exon,16,19953634,19953683,19953682,19953683,50,+,CATGAACACCTCAGACTGGAACTCATGCATCCTGGGCTTGGTGCGTTCCG,"Exon (Klhl6-201/Klhl6, exon 4 of 7)",16,19946496,19983037,36542,2,Klhl6-201,29354,Klhl6-201;Klhl6-204;Klhl6-203,Klhl6;Klhl6;Klhl6,0;12636;29324,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,239743,ENSMUSG00000043008,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22047,cg09957979,0.00000162,0.00000278,0.583382196,0.560060217,gain,ns,0.0000136,0.00000472,2.875449128,0.004313852,pos,ns,0.004504518,0.001383825,3.255121746,0.001258779,pos,ns,2.900050411,-0.000111553,0.0000476,-2.34405431,0.019706609,neg,ns,0.943442801,Sbf2,Sbf2_Exon,7,110371615,110371664,110371615,110371616,50,+,CGATGTACTGCTTCTAGGGTCTCAATGTGCATAGCTACAATTCCTAGGAT,"Exon (Sbf2-205/Sbf2, exon 21 of 40)",7,110308013,110614922,306910,2,Sbf2-205,243258,Sbf2-205;Sbf2-201;Sbf2-208,Sbf2;Sbf2;Sbf2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,319934,ENSMUSG00000038371,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1805,cg16171182,0.000062,0.000013,4.748438909,0.00000314,gain,ns,-0.0000637,0.0000222,-2.874955965,0.004320418,neg,ns,-0.004362186,0.006494532,-0.671670603,0.502293641,neg,ns,0.29904232,0.0000581,0.000223346,0.259991128,0.795043209,pos,ns,0.614430415,Foxp2,Foxp2_Intron,6,15378744,15378793,15378744,15378745,50,+,CGTACAGGAAACAGTTTTGACCTCCTGAGGCTTTGTTTCTGTTTGGATTT,"Intron (Foxp2-207/Foxp2, intron 7 of 18)",6,14901349,15441977,540629,1,Foxp2-207,477395,Foxp2-207;Foxp2-213;Foxp2-205;Foxp2-204;Foxp2-201;Foxp2-210;Foxp2-214;Foxp2-212;Foxp2-209;Foxp2-202;Foxp2-215;Foxp2-206,Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2,0;0;0;0;0;0;0;0;0;0;2055;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,38,65,114142,ENSMUSG00000029563,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24083,cg27411156,0.0000274,0.00000477,5.739921221,2.26E-08,gain,yes,0.0000233,0.00000811,2.874824491,0.00432217,pos,ns,0.010332632,0.002376148,4.348478916,0.0000186,pos,ns,4.730036751,-0.000128808,0.0000817,-1.576292665,0.115978282,neg,ns,0.072443183,Zic5,Zic5_Intergenic_downstream,14,122454019,122454068,122454067,122454068,50,+,GTCCGGGCTTTTTCACTCGGAGGAATCATCTGTTTGGTTATTTTTCATCG,Downstream (2-3kb),14,122459193,122460021,829,2,Zic5-202,5953,Zic5-201,Zic5,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,14,26,65100,ENSMUSG00000041703,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9779,cg23963089,-0.00000426,0.00000366,-1.163167297,0.245656188,loss,ns,0.0000179,0.00000622,2.874346029,0.004328551,pos,ns,0.005239632,0.001820946,2.877422903,0.004287666,pos,ns,2.367779054,-0.000125676,0.0000626,-2.006889953,0.045629342,neg,ns,0.931318908,Ascc3,Ascc3_Intron,10,50843431,50843480,50843479,50843480,50,+,ATGGTTATTTGGCTCAAAAGTGCTTCAATTTGCAGAGCAATCTGGTGCCG,"Intron (Ascc3-201/Ascc3, intron 39 of 41)",10,50592669,50851485,258817,1,Ascc3-201,250762,Ascc3-201;Ascc3-202,Ascc3;Ascc3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,6,77987,ENSMUSG00000038774,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5290,cg21920856,-0.00000216,0.00000193,-1.118794915,0.264093813,loss,ns,0.00000941,0.00000327,2.874091333,0.004331951,pos,ns,0.002334848,0.00095883,2.435102825,0.015451219,pos,ns,1.811037252,-0.0000507,0.000033,-1.536222475,0.125503815,neg,ns,0.967295592,Rngtt,Rngtt_Exon,4,33330873,33330922,33330921,33330922,50,-,GCCAGACCACCAGGAATCTACAAGGGTGATTATTTGAAGGAACTTTTTCG,"Exon (Rngtt-202/Rngtt, exon 6 of 16)",4,33310311,33502614,192304,1,Rngtt-202,20562,Rngtt-202;Rngtt-201;Rngtt-203;Rngtt-205;Rngtt-204,Rngtt;Rngtt;Rngtt;Rngtt;Rngtt,0;0;8637;0;-92,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,24018,ENSMUSG00000028274,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5673,cg21712213,0.000107493,0.0000186,5.772607662,1.89E-08,gain,yes,-0.0000909,0.0000316,-2.873013202,0.004346371,neg,ns,0.073447789,0.009267983,7.92489459,4.15E-14,pos,yes,13.38238061,-0.001646159,0.000318725,-5.164823531,0.000000431,neg,yes,0.409746188,Mapkap1,Mapkap1_Intron,2,34535174,34535223,34535174,34535175,50,+,CGTCTGCAAGCAATTTGGATGCTTGCCAGGAGTCATTGTTCACCCTCGGC,"Intron (Mapkap1-204/Mapkap1, intron 6 of 10)",2,34406862,34623475,216614,1,Mapkap1-204,128312,Mapkap1-204;Mapkap1-202;Mapkap1-201;Mapkap1-209;Mapkap1-203;Mapkap1-207,Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,59,227743,ENSMUSG00000038696,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8284,cg25010729,0.00000945,0.0000026,3.633199671,0.000327518,gain,ns,-0.0000127,0.00000442,-2.872256469,0.004356518,neg,ns,0.009034851,0.001294275,6.980626379,1.79E-11,pos,yes,10.74681852,-0.00019485,0.0000445,-4.37767021,0.0000164,neg,ns,0.943889445,Ube4a,Ube4a_threeUTR,9,44942829,44942878,44942829,44942830,50,-,CGATGCAGATTTTGGTTGATTTTTACCATCTGATCATGCAACCTGCCCCC,3' UTR,9,44923127,44965578,42452,2,Ube4a-201,22700,Ube4a-201;Ube4a-202;Ube4a-205;Ube4a-206;Ube4a-204,Ube4a;Ube4a;Ube4a;Ube4a;Ube4a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,4,140630,ENSMUSG00000059890,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2471,cg26143218,0.000000822,0.00000263,0.312172462,0.755119327,gain,ns,0.0000129,0.00000448,2.871615138,0.004365135,pos,ns,0.001472891,0.001311026,1.12346483,0.262109398,pos,ns,0.581517408,-0.0000133,0.0000451,-0.295924374,0.767485968,neg,ns,0.961903023,Glns-ps1,Glns-ps1_Promoter,11,19713551,19713600,19713551,19713552,50,-,CGATTTAAAGCATATTGCGGTGACATTTTTATCAAATTAAATGAGTTTGC,Promoter (6-7kb),11,19720355,19721472,1118,1,Glns-ps1-201,-6804,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,2,14646,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18215,cg09228482,-0.00000256,0.00000161,-1.583914957,0.114232665,loss,ns,0.00000787,0.00000274,2.871305881,0.004369296,pos,ns,0.003605112,0.000803487,4.486831019,0.0000102,pos,ns,4.991421535,-0.000105357,0.0000276,-3.812868777,0.000165724,neg,ns,0.9557453,Ap3b1,Ap3b1_Intron,13,94490846,94490895,94490846,94490847,50,+,CGGTGTGAAATTCTCATTTTACACACTTTGCAGGCGGAGCACATGAATTA,"Intron (Ap3b1-201/Ap3b1, intron 20 of 26)",13,94358960,94566317,207358,1,Ap3b1-201,131886,Ap3b1-201;Ap3b1-205,Ap3b1;Ap3b1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,55,11774,ENSMUSG00000021686,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22199,cg11572839,-0.0000467,0.00000931,-5.016090808,0.00000089,loss,yes,0.0000454,0.0000158,2.871056015,0.00437266,pos,ns,0.018506253,0.004633549,3.993969818,0.0000812,pos,ns,4.090403812,-0.000575107,0.000159347,-3.6091413,0.000358076,neg,ns,0.777196845,Galnt18,Galnt18_Intron,7,111749506,111749555,111749506,111749507,50,-,CGTTTTTCTATTTAATGACTCTAAAGAGACAGAAAAGCTTTAATCAATGC,"Intron (Galnt18-201/Galnt18, intron 1 of 10)",7,111471661,111779977,308317,2,Galnt18-201,30422,Galnt18-201;Galnt18-202,Galnt18;Galnt18,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,3,233733,ENSMUSG00000038296,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
911,cg13700099,-0.00000509,0.00000516,-0.984963149,0.325410286,loss,ns,0.0000252,0.00000877,2.870761947,0.004376623,pos,ns,0.003068542,0.002570311,1.193840376,0.23345317,pos,ns,0.631800224,-0.000170786,0.0000884,-1.932128627,0.054254621,neg,ns,0.890943734,Gm5110,Gm5110_Intergenic_downstream,6,9820731,9820780,9820731,9820732,50,+,CGTACCACAGCTGTCCTCCACTAAATGAATTAGATCAGGGTAATTAATCT,Distal Intergenic,6,10171792,10172854,1063,2,Gm5110-201,352074,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,330264,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25604,cg02941993,0.0000647,0.0000138,4.674265619,0.00000441,gain,ns,0.0000675,0.0000235,2.870456838,0.004380737,pos,ns,0.012489395,0.006885106,1.813972662,0.070648628,pos,ns,1.150896268,0.00019776,0.000236778,0.835211267,0.40424199,pos,ns,0.247519488,Ebf3,Ebf3_Intron,7,137308748,137308797,137308748,137308749,50,-,CGCTGCATCGCTGCTCTAGGGAAGAGGTTAACTGACAGAATCACAATCCA,"Intron (Ebf3-204/Ebf3, intron 5 of 15)",7,137193673,137314445,120773,2,Ebf3-204,5648,Ebf3-204;Ebf3-201;Ebf3-202;Ebf3-203;Ebf3-208;Ebf3-206,Ebf3;Ebf3;Ebf3;Ebf3;Ebf3;Ebf3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,62,84,13593,ENSMUSG00000010476,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
11068,cg01130719,-0.0000102,0.00000629,-1.627363665,0.104675818,loss,ns,0.0000307,0.0000107,2.870343763,0.004382263,pos,ns,0.008833129,0.003132662,2.819687918,0.00511657,pos,ns,2.291021056,-0.000322049,0.000107732,-2.989355107,0.003019411,neg,ns,0.86389639,Ints6l,Ints6l_Exon,X,56493035,56493084,56493083,56493084,50,-,ACAGATGACTTGTTTAAAGTTCACAAGCTTAAGCCAAATCTGAAGTGGCG,"Exon (Ints6l-204/Ints6l, exon 10 of 16)",20,56454857,56507840,52984,1,Ints6l-204,38178,Ints6l-204;Ints6l-201;Ints6l-202;Ints6l-207;Ints6l-203;Ints6l-206,Ints6l;Ints6l;Ints6l;Ints6l;Ints6l;Ints6l,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,236790,ENSMUSG00000035967,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23675,cg12767876,-0.00000414,0.00000149,-2.780167261,0.005765204,loss,ns,0.00000727,0.00000253,2.870274267,0.004383201,pos,ns,0.001355948,0.00074191,1.827645108,0.068563954,pos,ns,1.163904147,-0.0000477,0.0000255,-1.869745446,0.062461649,neg,ns,0.965819947,Ptbp2,Ptbp2_Intron,3,119724734,119724783,119724782,119724783,50,-,GGGTGGTTCCCGCAGAATGGTGAGGTGGTCATGGATCATGGTTCAAGGCG,"Intron (Ptbp2-201/Ptbp2, intron 9 of 13)",3,119718742,119783388,64647,2,Ptbp2-201,58605,Ptbp2-201;Ptbp2-213;Ptbp2-208;Ptbp2-206;Ptbp2-204;Ptbp2-211;Ptbp2-202,Ptbp2;Ptbp2;Ptbp2;Ptbp2;Ptbp2;Ptbp2;Ptbp2,0;0;0;0;0;-347;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,13,56195,ENSMUSG00000028134,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5544,cg25436049,-0.00000479,0.00000224,-2.142137442,0.032961266,loss,ns,0.0000109,0.0000038,2.869521519,0.004393373,pos,ns,0.002395242,0.001113089,2.151887077,0.032178246,pos,ns,1.492437639,-0.0000658,0.0000383,-1.718806925,0.08664786,neg,ns,0.94613199,Pbx3,Pbx3_Intron,2,34229594,34229643,34229594,34229595,50,-,CGGCAATGCACTGCACATTTCCACGCCAACCTAGTTGTCACTTTCGCTTG,"Intron (Pbx3-202/Pbx3, intron 2 of 7)",2,34171457,34372038,200582,2,Pbx3-202,142395,Pbx3-202;Pbx3-201;Pbx3-210;Pbx3-206;Pbx3-207;Pbx3-209;Pbx3-204;Pbx3-205;Pbx3-203,Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,82,18516,ENSMUSG00000038718,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3089,cg12029983,0.0000324,0.00000657,4.930621476,0.00000134,gain,yes,0.000032,0.0000112,2.868874173,0.004402138,pos,ns,0.005581918,0.003269566,1.707235254,0.088779608,pos,ns,1.051686777,0.00023706,0.00011244,2.10832187,0.035805372,pos,ns,0.804151818,Lrmda,Lrmda_Intron,14,22668826,22668875,22668874,22668875,50,-,CTCCTGACAGCAGATTTAATTCTTCCCTCCTCTCACCTGATGGAGCTTCG,"Intron (Lrmda-201/Lrmda, intron 5 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,649114,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206,Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11495,cg11218170,0.00000914,0.00000288,3.177885253,0.001633174,gain,ns,-0.000014,0.00000489,-2.86872804,0.004404119,neg,ns,-0.003303504,0.001431994,-2.30692596,0.021717837,neg,ns,1.663183437,0.0000939,0.0000492,1.907598599,0.057367004,pos,ns,0.933597184,Nptn,Nptn_Exon,9,58618769,58618818,58618769,58618770,50,+,CGCAGAAGTCAACCGGGCAGAGTCTTTCAGACAGCTGTGGGACGGTGCTC,"Exon (Nptn-212/Nptn, exon 2 of 8)",9,58582240,58651318,69079,1,Nptn-212,36529,Nptn-212;Nptn-201;Nptn-213;Nptn-206;Nptn-203;Nptn-202;Nptn-211;Nptn-207;Nptn-204,Nptn;Nptn;Nptn;Nptn;Nptn;Nptn;Nptn;Nptn;Nptn,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,20,22,20320,ENSMUSG00000032336,conserved gene and region,9,58618678,58618932,255,*,255,20,0.6,0.879917184,0.078431373,1.96E-13,CpGisland,TRUE,NA,NRS
15087,cg01962179,-0.0000392,0.00000911,-4.306497536,0.0000223,loss,ns,0.0000444,0.0000155,2.86859404,0.004405936,pos,ns,0.00436405,0.004534905,0.962324297,0.336636755,pos,ns,0.472838468,-0.000228611,0.000155955,-1.465878755,0.143694888,neg,ns,0.83752082,Gm8345,Gm8345_Intergenic_upstream,13,79044969,79045018,79044969,79044970,50,+,CGACATTCATTTGAAAAGCTAAAACTAGCATCCGGATAAAAAAAGGAAGG,Distal Intergenic,13,78953088,78954792,1705,2,Gm8345-201,-90177,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,13,666883,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2847,cg25561913,-0.00000324,0.00000553,-0.585266356,0.55879441,loss,ns,-0.000027,0.0000094,-2.868194911,0.004411352,neg,ns,0.003428345,0.002753825,1.244939255,0.214094363,pos,ns,0.669394767,-0.00021375,0.0000947,-2.257039343,0.024701515,neg,ns,0.364846862,Zfp503,Zfp503_fiveUTR,14,21987485,21987534,21987485,21987486,50,+,CGCTGTGCTTACTGCTTCTTAGGGCAGAAAGCGAGGGCGCTGTGCTCATG,5' UTR,14,21983959,21989601,5643,2,Zfp503-201,2067,Zfp503-201,Zfp503,0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,27,218820,ENSMUSG00000039081,conserved gene but different region,14,21987271,21988006,736,*,736,86,0.713315217,0.928039411,0.116847826,1.05E-71,CpGisland,TRUE,U3,Pr-B
13994,cg02324130,-0.0000114,0.00000673,-1.689670067,0.09209645,loss,ns,0.0000328,0.0000114,2.867845807,0.004416094,pos,ns,0.008705586,0.003350697,2.598141844,0.009820596,pos,ns,2.00786217,0.0000102,0.00011523,0.08825924,0.929727622,pos,ns,0.395254336,Gm13668,Gm13668_Intergenic_upstream,2,74119312,74119361,74119312,74119313,50,+,CGAGTCAGTTGAAATGATTCATGGGTCTGACAGATGTCTGGTACAGCTGG,Distal Intergenic,2,73959669,73960669,1001,2,Gm13668-201,-158643,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,18,20,667729,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17619,cg13609584,0.000017,0.00000864,1.971166056,0.049594066,gain,ns,0.0000421,0.0000147,2.867200898,0.004424867,pos,ns,0.001612102,0.004299317,0.374966918,0.70794147,pos,ns,0.150002647,0.0000407,0.000147853,0.275406518,0.783187417,pos,ns,0.667000054,Fbln2,Fbln2_Exon,6,91268561,91268610,91268561,91268562,50,-,CGCTGCAGCCAGGAGTGTGCCAACATCTATGGCTCCTACCAGTGCTACTG,"Exon (Fbln2-202/Fbln2, exon 14 of 17)",6,91212455,91272539,60085,1,Fbln2-202,56106,Fbln2-202;Fbln2-201;Fbln2-206,Fbln2;Fbln2;Fbln2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,14115,ENSMUSG00000064080,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16826,cg15578568,0.000009,0.00000573,1.572386124,0.116881067,gain,ns,-0.0000279,0.00000973,-2.865489923,0.004448219,neg,ns,-0.006109046,0.002850212,-2.143365706,0.032861727,neg,ns,1.483309621,-0.0000999,0.000098,-1.01888236,0.309053316,neg,ns,0.82294539,Lrba,Lrba_Intron,3,86668288,86668337,86668336,86668337,50,+,TTTTCAGCCCTCTGTTGGCAGGTTTCTGCTTTTCCAGATTATTACAGACG,"Intron (Lrba-202/Lrba, intron 47 of 50)",3,86224680,86746712,522033,1,Lrba-202,443608,Gm3788-201;Lrba-202;Lrba-204;Lrba-201;Lrba-206,Gm3788;Lrba;Lrba;Lrba;Lrba,3831;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,45,80877,ENSMUSG00000028080,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14913,cg02097077,-0.0000439,0.00000772,-5.682926549,3.05E-08,loss,yes,-0.0000376,0.0000131,-2.864988823,0.004455079,neg,ns,0.016925628,0.003840552,4.407081885,0.0000145,pos,ns,4.839955189,-0.000555393,0.000132076,-4.205095329,0.0000342,neg,ns,0.826582617,Fam222b,Fam222b_Exon,11,78154447,78154496,78154447,78154448,50,+,CGAGGGCAGGCATCAGCACTACCTCAGTGTGTGAGGGCCAGATCGCCAAC,"Exon (Fam222b-201/Fam222b, exon 3 of 3)",11,78094660,78156700,62041,1,Fam222b-201,59787,Fam222b-201;Fam222b-202;Fam222b-203;Traf4-203;Traf4-201,Fam222b;Fam222b;Fam222b;Traf4;Traf4,0;0;0;11093;11093,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,21,216971,ENSMUSG00000037750,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11874,cg17261277,-0.0000409,0.0000135,-3.016955491,0.002764791,loss,ns,0.0000659,0.000023,2.864806053,0.004457584,pos,ns,0.012474042,0.006743164,1.849879609,0.065282452,pos,ns,1.185203541,-0.000260067,0.000231897,-1.121477135,0.262952772,neg,ns,0.13641572,Tle3,Tle3_Promoter,9,61372217,61372266,61372265,61372266,50,+,TTCATGCATAGTTTTAGACACAAGAGGGCATTGTGACGTCGCGCCCAGCG,Promoter (<=1kb),9,61372366,61418497,46132,1,Tle3-218,-100,Tle3-218;Tle3-204;Tle3-201;Tle3-215;Tle3-212;Tle3-208;Tle3-207;Tle3-217;Tle3-202;Tle3-206;Tle3-210;Tle3-205;Tle3-211;Tle3-209;Tle3-213,Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,11,30,21887,ENSMUSG00000032280,conserved gene but different region,9,61372253,61372343,91,*,91,13,0.736263736,1.065765766,0.142857143,2.25E-12,CpGisland,TRUE,U6,En-Sp
27785,cg09147313,-0.00000542,0.00000229,-2.368087658,0.018493606,loss,ns,0.0000111,0.00000389,2.864728206,0.004458651,pos,ns,0.002121901,0.00113962,1.861937144,0.063558049,pos,ns,1.196829445,-0.0000551,0.0000392,-1.40534619,0.160919713,neg,ns,0.947042919,Gm19058,Gm19058_Intergenic_downstream,1,186988738,186988787,186988786,186988787,50,+,GAAGCTGGCCAGAGGGCAGAATGGACAAGTCCTGCTTTTCAAAAAGACCG,Distal Intergenic,1,187006007,187006604,598,2,Gm19058-201,17817,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,4,100418181,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7329,cg09803667,0.00000283,0.00000217,1.30532371,0.192750619,gain,ns,-0.0000106,0.00000369,-2.863845493,0.004470768,neg,ns,-0.000771095,0.001079947,-0.714011844,0.475757101,neg,ns,0.322614721,0.0000467,0.0000371,1.256408427,0.209913886,pos,ns,0.924601461,Rbm27,Rbm27_Exon,18,42314021,42314070,42314069,42314070,50,+,CAGTTGGGGACACCGCCTCCTCTGTTGGCAGCTCGTTTGGTGCCACCTCG,"Exon (Rbm27-201/Rbm27, exon 9 of 20)",18,42275353,42341542,66190,1,Rbm27-201,38668,Rbm27-201;Rbm27-202;Rbm27-203;Rbm27-205,Rbm27;Rbm27;Rbm27;Rbm27,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,10,225432,ENSMUSG00000024491,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6283,cg06980755,-0.0000167,0.0000113,-1.482619792,0.139191311,loss,ns,-0.0000548,0.0000192,-2.863038483,0.004481872,neg,ns,-0.005574719,0.005612239,-0.993314604,0.321331355,neg,ns,0.493046895,-0.0000649,0.000193004,-0.336266548,0.736897373,neg,ns,0.710848976,Tshz3,Tshz3_Intron,7,36728976,36729025,36728976,36728977,50,+,CGTTCCGATCTGCATTTTTGGTTTAGAATTTTTATGGTGAATTGCCATAT,"Intron (Tshz3-201/Tshz3, intron 1 of 1)",7,36698118,36773553,75436,1,Tshz3-201,30858,Tshz3-201,Tshz3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,58,243931,ENSMUSG00000021217,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23511,cg22688132,-0.000017,0.00000572,-2.982259539,0.003088254,loss,ns,0.0000278,0.00000971,2.862989506,0.004482547,pos,ns,-0.002482654,0.002845096,-0.872608246,0.383552019,neg,ns,0.416175727,0.0000402,0.0000978,0.410488841,0.681730956,pos,ns,0.888553914,Gm18441,Gm18441_Promoter,12,118739771,118739820,118739771,118739772,50,+,CGTGAGGTTTTATCAACTGTCCTGACACATCCCAGATAGCTCAGAATTCT,Promoter (6-7kb),12,118732439,118733055,617,2,Gm18441-201,-6716,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,9,100417195,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6970,cg19643847,-0.000029,0.00000788,-3.680869468,0.00027407,loss,ns,0.0000383,0.0000134,2.862775768,0.004485492,pos,ns,-0.001924915,0.003921622,-0.490846557,0.623882257,neg,ns,0.204897365,-0.0000155,0.000134864,-0.114626322,0.908815521,neg,ns,0.861995095,9330182O14Rik,9330182O14Rik_Intergenic_downstream,15,40256377,40256426,40256425,40256426,50,-,ACAATGATATCTCCCCAAAGCAGCCGGGCAGCCATTAATTTTGAAATTCG,Distal Intergenic,15,40142188,40148689,6502,1,9330182O14Rik-201,114238,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,6,328531,ENSMUSG00000094112,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15558,cg07630183,0.00000126,0.00000281,0.447229486,0.655021691,gain,ns,0.0000136,0.00000477,2.862031977,0.004495756,pos,ns,0.003436374,0.001397155,2.459551356,0.014456821,pos,ns,1.839927209,-0.0000853,0.000048,-1.775004918,0.07687827,neg,ns,0.944695717,Adgrl3,Adgrl3_Exon,5,81787472,81787521,81787520,81787521,50,+,TTCGTCCGCATGGTACTAACAATCCCTATAATACATTGCTTGGGGAACCG,"Exon (Adgrl3-203/Adgrl3, exon 26 of 27)",5,81020571,81796634,776064,1,Adgrl3-223,766901,Adgrl3-223;Adgrl3-203;Adgrl3-211;Adgrl3-217;Adgrl3-232;Adgrl3-207;Adgrl3-205;Adgrl3-206;Adgrl3-208;Adgrl3-212;Adgrl3-213;Adgrl3-214;Adgrl3-215;Adgrl3-216;Adgrl3-209;Adgrl3-218;Adgrl3-219;Adgrl3-204;Adgrl3-210;Adgrl3-201;Adgrl3-202;Adgrl3-220;Adgrl3-229;Adgrl3-235,Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,13,319387,ENSMUSG00000037605,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17788,cg13529178,-0.0000201,0.00000582,-3.446856618,0.000645459,loss,ns,-0.0000283,0.00000989,-2.861697657,0.004500377,neg,ns,0.000561329,0.00289793,0.19369997,0.846537673,pos,ns,0.07235371,-0.000386928,0.0000997,-3.882497078,0.000126372,neg,ns,0.876155461,Son,Son_Exon,16,91665085,91665134,91665133,91665134,50,+,TCCCTGCACTTGTGGGAAGGTAGTCCAAGGTACAACTATTTAGCTTCCCG,"Exon (Son-204/Son, exon 7 of 7)",16,91647506,91679207,31702,1,Son-203,17579,Son-203;Son-204;Son-202;Son-208;Son-201;Son-205;Son-212;Son-207,Son;Son;Son;Son;Son;Son;Son;Son,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,31,20658,ENSMUSG00000022961,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14063,cg09552025,0.0000324,0.0000139,2.326710551,0.020624823,gain,ns,-0.0000677,0.0000237,-2.861099666,0.004508652,neg,ns,0.036327607,0.006932508,5.240182789,0.000000297,pos,ns,6.527128275,-0.001466434,0.000238408,-6.150934657,2.37E-09,neg,yes,0.817766234,Birc6,Birc6_Exon,17,74558006,74558055,74558054,74558055,50,+,GTGGCGTCCTCAGTGATGGACAGATTGTCTTACCTCTTACCTAGTGCACG,"Exon (Birc6-202/Birc6, exon 4 of 73)",17,74528295,74703356,175062,1,Birc6-202,29711,Birc6-202;Birc6-204;Birc6-213;Birc6-218;Birc6-212;Birc6-220;Birc6-209;Birc6-203,Birc6;Birc6;Birc6;Birc6;Birc6;Birc6;Birc6;Birc6,0;0;0;0;0;0;0;-2728,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,10,12211,ENSMUSG00000024073,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26045,cg02628072,0.00000119,0.00000953,0.124577927,0.900938446,gain,ns,0.0000463,0.0000162,2.861095917,0.004508704,pos,ns,0.009051154,0.004741585,1.908887704,0.057199806,pos,ns,1.242605443,-0.000349076,0.000163063,-2.140744204,0.033074488,neg,ns,0.616053217,Gm2574,Gm2574_Intergenic_downstream,3,143411770,143411819,143411770,143411771,50,-,CGTTTGAGCTAGGTGTGAAATGTGAAGGTACAAAATTAACTGGTAAGGTA,Distal Intergenic,3,142962611,142963612,1002,1,Gm2574-201,449208,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,19,100040053,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25798,cg13399147,0.000068,0.00000534,12.73385686,3.66E-30,gain,yes,-0.0000259,0.00000907,-2.860645994,0.004514939,neg,ns,0.006419209,0.002657205,2.415774464,0.016279697,pos,ns,1.788353693,-0.0000507,0.0000914,-0.555056279,0.579256446,neg,ns,0.122095137,Uncx,Uncx_Intergenic_downstream,5,139549019,139549068,139549067,139549068,50,+,TGCGTTATCAGCCTATTGATCATGTGTCGCCTGTAATAGGACAGGCGCCG,Distal Intergenic,5,139543898,139545268,1371,1,Uncx-202,5121,Uncx-201;Uncx-202,Uncx;Uncx,0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,59,88,22255,ENSMUSG00000029546,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
21426,cg15243041,-0.00000963,0.00000771,-1.248446526,0.212809619,loss,ns,0.0000375,0.0000131,2.860366072,0.004518823,pos,ns,0.012300619,0.00383815,3.204830399,0.001492205,pos,ns,2.826171602,-0.0001979,0.000131994,-1.499315606,0.134809441,neg,ns,0.823703199,Cacng4,Cacng4_Exon,11,107735124,107735173,107735172,107735173,50,+,TCAACTCTTTATTTTTCTCAATGTAAATGTTTACAGCCAGGACGCCCACG,"Exon (Cacng4-201/Cacng4, exon 4 of 4)",11,107732357,107794557,62201,2,Cacng4-201,59384,Cacng4-201;Cacng4-202,Cacng4;Cacng4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,8,54377,ENSMUSG00000020723,conserved gene and region,11,107735166,107735331,166,*,166,12,0.493975904,1.18783542,0.072289157,7.76E-08,CpGisland,TRUE,U15,NS
7624,cg22552849,0.000059,0.00000469,12.56853701,1.47E-29,gain,yes,-0.0000228,0.00000798,-2.86030937,0.00451961,neg,ns,0.003585784,0.002336458,1.534709049,0.125875251,pos,ns,0.900059649,-0.0000454,0.0000804,-0.565368342,0.572232198,neg,ns,0.101031348,Zbtb20,Zbtb20_Intron,16,43503409,43503458,43503409,43503410,50,+,CGTGGTCTGCTTGCTGATGGCAGAATGGCACTCGGAGATTTGTGCATTGT,"Intron (Zbtb20-211/Zbtb20, intron 4 of 4)",16,42907542,43569781,662240,1,Zbtb20-211,595867,Zbtb20-211;Zbtb20-217;Zbtb20-204;Zbtb20-215;Zbtb20-201;Zbtb20-203;Zbtb20-214;Zbtb20-213;Zbtb20-219;Zbtb20-216;Zbtb20-208;Zbtb20-207;Zbtb20-220;Zbtb20-206;Zbtb20-221;Zbtb20-202,Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,98,56490,ENSMUSG00000022708,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
6604,cg00867415,-0.00000177,0.00000169,-1.050305566,0.294395729,loss,ns,0.0000082,0.00000287,2.859897083,0.004525336,pos,ns,0.002976621,0.000840462,3.541646404,0.000458725,pos,ns,3.338447455,-0.0000587,0.0000289,-2.030754192,0.043133109,neg,ns,0.048625068,Rreb1,Rreb1_fiveUTR,13,37827586,37827635,37827586,37827587,50,-,CGCGGTCTCTTAGGAAACTGCGACCTTAATGGTTGCTAAGGAGCAGGGGA,5' UTR,13,37778400,37893849,115450,1,Rreb1-204,49186,Rreb1-204;Rreb1-208;Rreb1-203;Rreb1-207;Rreb1-210;Rreb1-206;Rreb1-202,Rreb1;Rreb1;Rreb1;Rreb1;Rreb1;Rreb1;Rreb1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,10,68750,ENSMUSG00000039087,conserved gene but different region,13,37826930,37827866,937,*,937,108,0.724653148,0.883776986,0.115261473,3.68E-89,CpGisland,TRUE,U1,Pr-A
18191,cg27092966,0.00000367,0.0000027,1.359740468,0.1749002,gain,ns,-0.0000131,0.00000459,-2.858962009,0.004538347,neg,ns,0.00527574,0.001345133,3.922094493,0.000108126,pos,ns,3.966069602,-0.000192157,0.0000463,-4.153941511,0.0000423,neg,ns,0.944663543,Ap3b1,Ap3b1_Intron,13,94423852,94423901,94423852,94423853,50,+,CGATTGACTTTAAATTTACATATTAATGAGAAGATTTGTTAAGAGGGTGC,"Intron (Ap3b1-201/Ap3b1, intron 7 of 26)",13,94358960,94566317,207358,1,Ap3b1-201,64892,Ap3b1-201,Ap3b1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,55,11774,ENSMUSG00000021686,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19657,cg02466247,-0.0000672,0.0000155,-4.323983878,0.0000207,loss,ns,0.0000755,0.0000264,2.858725975,0.004541637,pos,ns,-0.015392286,0.007734196,-1.990159657,0.047451391,neg,ns,1.323751049,0.000402407,0.000265978,1.512931233,0.131315918,pos,ns,0.674968141,Gm28267,Gm28267_Intergenic_upstream,9,100325302,100325351,100325302,100325303,50,-,CGATTTACATTCTCAATGTAATGTATTAAAAAGTTGACAGGGACGAAAGG,Distal Intergenic,9,100404495,100404759,265,1,Gm28267-201,-79193,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,29,29,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17416,cg25331358,-0.0000135,0.0000309,-0.4367123,0.662624028,loss,ns,-0.000149841,0.0000524,-2.858436059,0.004545681,neg,ns,-0.01794393,0.015357514,-1.168413651,0.243537705,neg,ns,0.613433791,0.00000956,0.000528144,0.018096329,0.985573648,pos,ns,0.871572469,Nrxn1,Nrxn1_Exon,17,90163815,90163864,90163863,90163864,50,+,ACTACTCGACCAAGTCGATATGGAATTCGCTGTCTAGCAATCGCCAGGCG,"Exon (Nrxn1-202/Nrxn1, exon 18 of 21)",17,90033631,91088907,1055277,2,Nrxn1-202,925043,Nrxn1-202;Nrxn1-207;Nrxn1-216;Nrxn1-204;Nrxn1-217;Nrxn1-209;Nrxn1-201;Nrxn1-213;Nrxn1-206;Nrxn1-223;Nrxn1-219,Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,22,27,18189,ENSMUSG00000024109,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17740,cg25259119,-0.000000902,0.00000174,-0.519046829,0.604098428,loss,ns,0.00000843,0.00000295,2.857756939,0.004555166,pos,ns,0.001925627,0.000864506,2.227431504,0.026636111,pos,ns,1.574529184,-0.0000548,0.0000297,-1.842961933,0.066289163,neg,ns,0.970775023,Ckap5,Ckap5_Exon,2,91595712,91595761,91595712,91595713,50,+,CGTAAAGATGTTCGTGCCATCCTGAACCGGATGTGCCTTGTCTACCCAGC,"Exon (Ckap5-204/Ckap5, exon 31 of 44)",2,91526762,91620664,93903,1,Ckap5-204,68950,Ckap5-204;Ckap5-201;Ckap5-202;Ckap5-203;Ckap5-209;Ckap5-206,Ckap5;Ckap5;Ckap5;Ckap5;Ckap5;Ckap5,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,75786,ENSMUSG00000040549,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25581,cg01000178,0.0000027,0.00000758,0.356475068,0.72172732,gain,ns,-0.0000368,0.0000129,-2.857409657,0.004560023,neg,ns,0.001346852,0.003773696,0.356905398,0.72140545,pos,ns,0.141820581,-0.000132438,0.000129777,-1.020502563,0.308285909,neg,ns,0.820997968,Ebf3,Ebf3_Intron,7,137258601,137258650,137258601,137258602,50,-,CGGTGATTTATCCTCATTATTGTGTAAATAGGTTTCGGCAGTTCTCAGTA,"Intron (Ebf3-204/Ebf3, intron 6 of 15)",7,137193673,137314445,120773,2,Ebf3-204,55795,Ebf3-204;Ebf3-201;Ebf3-202;Ebf3-203;Ebf3-208;Ebf3-205,Ebf3;Ebf3;Ebf3;Ebf3;Ebf3;Ebf3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,62,84,13593,ENSMUSG00000010476,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13454,cg01309929,0.0000447,0.00000618,7.234857432,3.68E-12,gain,yes,-0.00003,0.0000105,-2.85721315,0.004562774,neg,ns,-0.007566162,0.00307453,-2.460916743,0.014402997,neg,ns,1.841547139,-0.000170366,0.000105733,-1.611286051,0.10813504,neg,ns,0.837254679,Mink1,Mink1_Exon,11,70612726,70612775,70612726,70612727,50,-,CGGCTCAAGGTCATCTATGGCTCCAGTGCTGGCTTCCATGCTGTGGATGT,"Exon (Mink1-201/Mink1, exon 30 of 33)",11,70562881,70614482,51602,1,Mink1-201,49845,4930544D05Rik-204;4930544D05Rik-201;4930544D05Rik-202;4930544D05Rik-203;Chrne-202;Chrne-201;Chrne-204;Chrne-203;Mink1-201;Mink1-202;Mink1-205;Mink1-203;Mink1-204;Mink1-208;Mink1-212;Mink1-211;Mink1-209;Mink1-206,4930544D05Rik;4930544D05Rik;4930544D05Rik;4930544D05Rik;Chrne;Chrne;Chrne;Chrne;Mink1;Mink1;Mink1;Mink1;Mink1;Mink1;Mink1;Mink1;Mink1;Mink1,-3073;-3119;-3122;-3135;6419;6441;2898;2922;0;0;0;0;0;0;0;0;2988;2675,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,7,50932,ENSMUSG00000020827,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22907,cg05277538,0.0000215,0.00000415,5.177480987,0.000000405,gain,yes,-0.0000202,0.00000705,-2.856735734,0.004569462,neg,ns,0.006772848,0.002066814,3.276951188,0.001168411,pos,ns,2.932404435,-0.000245411,0.0000711,-3.452726955,0.000632088,neg,ns,0.789223896,Lrrc41,Lrrc41_Exon,4,116088684,116088733,116088732,116088733,50,-,AAGTTCCGCCACCTGCTGTTCTCTGATGTGGCTGCTCAGCAGTCACTTCG,"Exon (Lrrc41-201/Lrrc41, exon 4 of 10)",4,116075269,116097043,21775,1,Lrrc41-201,13415,Lrrc41-201;Lrrc41-202;Lrrc41-204;Lrrc41-203,Lrrc41;Lrrc41;Lrrc41;Lrrc41,0;0;11799;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,Exon,9,9,230654,ENSMUSG00000028703,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13232,cg22876227,0.00000128,0.00000293,0.435907086,0.663207531,gain,ns,-0.0000142,0.00000497,-2.856455019,0.0045734,neg,ns,-0.003104793,0.001455934,-2.132510082,0.033750494,neg,ns,1.471719872,0.0000355,0.0000501,0.709579111,0.478498537,pos,ns,0.944906631,Nlgn2,Nlgn2_threeUTR,11,69823143,69823192,69823191,69823192,50,-,TACAATATTCTCTTCATCTTTTGCCAGGTTTAAAAATGTGTACAGAGCCG,3' UTR,11,69823122,69834849,11728,2,Nlgn2-201,11657,Nlgn2-201;Nlgn2-202;Nlgn2-203;Nlgn2-204;Spem1-201;Spem2-201,Nlgn2;Nlgn2;Nlgn2;Nlgn2;Spem1;Spem2,0;0;0;0;-963;-4678,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,17,216856,ENSMUSG00000051790,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15330,cg14387950,-0.000000596,0.0000106,-0.056431145,0.9550347,loss,ns,0.0000513,0.0000179,2.856357579,0.004574767,pos,ns,0.005623583,0.005256817,1.06976954,0.285555291,pos,ns,0.544309788,-0.0000678,0.000180782,-0.374854724,0.708024828,neg,ns,0.833287465,Arhgef33,Arhgef33_Exon,17,80381409,80381458,80381409,80381410,50,-,CGATCAAAATCCCAGGCAAGACCAGAAGGGGGGCTTTCGCAGCTCCTTCC,"Exon (Arhgef33-201/Arhgef33, exon 16 of 18)",17,80307407,80388688,81282,1,Arhgef33-201,74002,Arhgef33-201;Arhgef33-202;Arhgef33-206;Arhgef33-211;Arhgef33-207;Arhgef33-209;Arhgef33-210;Arhgef33-212,Arhgef33;Arhgef33;Arhgef33;Arhgef33;Arhgef33;Arhgef33;Arhgef33;Arhgef33,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,5,381112,ENSMUSG00000054901,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3090,cg16842195,0.0000446,0.00000821,5.436916469,0.00000011,gain,yes,0.0000398,0.0000139,2.856092974,0.004578482,pos,ns,0.007498042,0.004086181,1.834975738,0.06746732,pos,ns,1.170906542,0.000295569,0.000140523,2.103341639,0.036241519,pos,ns,0.6154296,Lrmda,Lrmda_Intron,14,22668903,22668952,22668903,22668904,50,-,CGACATGTGGAAAATGATTGATGAGCTGCCTGCGGCACTGAAGTACACTT,"Intron (Lrmda-201/Lrmda, intron 5 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,649191,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206,Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25082,cg21836698,0.0000215,0.0000108,1.989035944,0.047575944,gain,ns,0.0000523,0.0000183,2.855751135,0.004583285,pos,ns,0.005394072,0.005368391,1.004783755,0.315784629,pos,ns,0.500609014,0.000204073,0.000184619,1.105374739,0.269854383,pos,ns,0.230999513,Fgfr2,Fgfr2_Exon,7,132598313,132598362,132598313,132598314,50,-,CGATAGATGTCATCTATTAAAGGTAAGTTTTAATCGAACAATATTAGGAT,"Exon (Gm16764-202/Gm16764-202, exon 2 of 3)",7,130162451,133123350,2960900,2,Fgfr2-217,524988,Fgfr2-217;Nkx1-2-201,Fgfr2;Nkx1-2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,79,14183,ENSMUSG00000030849,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15684,cg22237797,0.00000813,0.00000647,1.255730288,0.210159402,gain,ns,0.0000314,0.000011,2.855303789,0.004589578,pos,ns,0.003588575,0.003222656,1.113545813,0.266336746,pos,ns,0.574568911,-0.00000896,0.000110827,-0.080875776,0.935592933,neg,ns,0.542730558,Gm14741,Gm14741_Intergenic_upstream,X,82814894,82814943,82814894,82814895,50,-,CGGCAGTAATAGAATGCTTTCAGGAAGATGACAGAATCAGGAGAAAGATG,Distal Intergenic,20,82757430,82758438,1009,2,Gm14741-201,-56505,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,11,100415954,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22772,cg21998093,-0.0000016,0.0000189,-0.084438159,0.932762572,loss,ns,0.0000917,0.0000321,2.85510873,0.004592325,pos,ns,-0.003677926,0.009407607,-0.390952343,0.696101012,neg,ns,0.157327735,0.00044262,0.000323527,1.368110249,0.172268383,pos,ns,0.553105912,Dmbx1,Dmbx1_Intron,4,115932186,115932235,115932186,115932187,50,-,CGAAGAATCAAGCAGAATTTTATTAGGGGGCATTTTTTATAAATTAACAG,"Intron (Dmbx1-203/Dmbx1, intron 1 of 4)",4,115915119,115939926,24808,2,Dmbx1-203,7691,Dmbx1-203;Dmbx1-202,Dmbx1;Dmbx1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,42,140477,ENSMUSG00000028707,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
4564,cg00658920,0.000014,0.0000047,2.97656894,0.003144502,gain,ns,-0.0000228,0.00000798,-2.855094215,0.004592529,neg,ns,0.006979862,0.002337739,2.985731777,0.003054388,pos,ns,2.51507584,-0.000195086,0.0000804,-2.426599458,0.015810995,neg,ns,0.887948763,9930021J03Rik,9930021J03Rik_Exon,19,29786380,29786429,29786428,29786429,50,-,TCCCTTCTCATCCTCCAATCCATAATAGCCTCTAGATGTAACTGCTATCG,"Exon (9930021J03Rik-201/9930021J03Rik, exon 2 of 8)",19,29714402,29805507,91106,2,9930021J03Rik-201,19078,9930021J03Rik-201;9930021J03Rik-204,9930021J03Rik;9930021J03Rik,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,240613,ENSMUSG00000046138,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5446,cg09246691,0.00000738,0.00000691,1.068833993,0.285976043,gain,ns,0.0000335,0.0000117,2.853025022,0.004621757,pos,ns,0.008884834,0.003438311,2.584069334,0.010221464,pos,ns,1.990486884,-0.000199978,0.000118243,-1.691239847,0.091796015,neg,ns,0.763902822,Mvb12b,Mvb12b_Intergenic_upstream,2,33966345,33966394,33966345,33966346,50,-,CGAAGCCCACGGATCTACAATTATTTGGTTGTTGTGAACAAATAAAGGAC,Distal Intergenic,2,33729953,33887946,157994,2,Mvb12b-201,-78448,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,16,47,72543,ENSMUSG00000038740,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12238,cg19977128,0.00000708,0.0000026,2.72559962,0.00678331,gain,ns,-0.0000126,0.00000441,-2.852785837,0.004625146,neg,ns,-0.000210099,0.001293108,-0.162476205,0.87103672,neg,ns,0.059963536,0.0000513,0.0000445,1.154183936,0.249313767,pos,ns,0.955097739,Ptch1,Ptch1_Intron,13,63554974,63555023,63554974,63554975,50,+,CGCAACAAAAAAGTTACGAGAAAAAAGTGAGTGTGTTCTTGCCCTAACAT,"Intron (Ptch1-201/Ptch1, intron 2 of 22)",13,63508328,63565735,57408,2,Ptch1-201,10712,Ptch1-201;Ptch1-204;Ptch1-206;Ptch1-202;Ptch1-207;Ptch1-203;Ptch1-205,Ptch1;Ptch1;Ptch1;Ptch1;Ptch1;Ptch1;Ptch1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,36,19206,ENSMUSG00000021466,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23881,cg08510751,-0.0000128,0.0000063,-2.027256584,0.043491548,loss,ns,0.0000305,0.0000107,2.851345715,0.004645601,pos,ns,0.005010757,0.003134919,1.598369154,0.110979566,pos,ns,0.954756979,-0.0000131,0.00010781,-0.121274953,0.903551829,neg,ns,0.661817427,Msrb3,Msrb3_Exon,10,120851984,120852033,120852032,120852033,50,+,CTTTCGGTCCCTTTCTCCTGAGTGACATGGTACTGCAGGGGTGTTAGCCG,"Exon (Msrb3-201/Msrb3, exon 3 of 7)",10,120781096,120899101,118006,2,Msrb3-201,47068,Msrb3-201;Msrb3-203;Msrb3-202,Msrb3;Msrb3;Msrb3,0;-1516;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,320183,ENSMUSG00000051236,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5846,cg14493233,-0.0000742,0.0000203,-3.65240811,0.000304899,loss,ns,0.0000983,0.0000345,2.850589485,0.004656376,pos,ns,0.045591906,0.010107711,4.510606318,0.00000918,pos,ns,5.03699655,-0.002219789,0.000347603,-6.385981284,6.22E-10,neg,yes,0.695326413,Grid1,Grid1_Intron,14,34986159,34986208,34986207,34986208,50,+,TTTAAAACTCATTGATTTTTGTGCTGACTTTTACAGTACAAATGTCATCG,"Intron (Grid1-201/Grid1, intron 3 of 15)",14,34820108,35583379,763272,1,Grid1-201,166051,Grid1-201,Grid1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,2,14803,ENSMUSG00000041078,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10435,cg12202087,-0.000000975,0.00000402,-0.242811319,0.808312142,loss,ns,0.0000194,0.00000682,2.850056751,0.00466398,pos,ns,0.006400675,0.001998756,3.202328818,0.001504802,pos,ns,2.822520768,-0.000171705,0.0000687,-2.498000713,0.013007459,neg,ns,0.924574581,Npas3,Npas3_Intron,12,53538018,53538067,53538066,53538067,50,+,CAAAGAGCGGTATTTTTCCAAGCGAACAAATAACATCAGTAAAGCTTACG,"Intron (Npas3-204/Npas3, intron 2 of 10)",12,53248157,54069532,821376,1,Npas3-204,289861,Npas3-204;Npas3-201;Npas3-203,Npas3;Npas3;Npas3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,83,103,27386,ENSMUSG00000021010,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
242,cg08644610,0.0000719,0.00000749,9.606799183,2.68E-19,gain,yes,-0.0000362,0.0000127,-2.84864945,0.00468412,neg,ns,0.003806348,0.003725508,1.021699205,0.307719934,pos,ns,0.511844369,-0.0000657,0.00012812,-0.513160146,0.608204801,neg,ns,0.546831042,Gm21992,Gm21992_Exon,19,4803532,4803581,4803532,4803533,50,-,CGGTAAGAGGCTGCCTGGGCTGTCATGGGCTGAGTCCGATAGCCAACACC,"Exon (Rbm14-201/Rbm14, exon 2 of 3)",19,4742913,4811612,68700,2,Gm21992-203,8031,Gm21992-203;Gm21992-206;Gm21992-204;Gm21992-201;Gm21992-205;Gm21992-202;Rbm14-201;Rbm14-202;Rbm14-203,Gm21992;Gm21992;Gm21992;Gm21992;Gm21992;Gm21992;Rbm14;Rbm14;Rbm14,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,27,48,102902673,ENSMUSG00000096370,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14624,cg23301448,-0.00000897,0.00000422,-2.128671122,0.034069701,loss,ns,0.0000204,0.00000716,2.848619427,0.004684551,pos,ns,0.002686876,0.002098,1.280684412,0.201261871,pos,ns,0.696238495,-0.000156954,0.0000722,-2.175388251,0.030356355,neg,ns,0.88944352,Ttn,Ttn_Exon,2,76925825,76925874,76925825,76925826,50,+,CGCATGAAATCTGACTGTCTCCCCGTTGTGCACCCTGAGGCTTGACAGAG,"Exon (Ttn-203/Ttn, exon 45 of 347)",2,76703980,76982455,278476,2,Ttn-201,56581,Ttn-201;Ttn-203;Ttn-205;Ttn-204;Ttn-211;Ttn-202,Ttn;Ttn;Ttn;Ttn;Ttn;Ttn,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,12,22138,ENSMUSG00000051747,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11428,cg06273039,0.0000673,0.00000568,11.84846133,5.77E-27,gain,yes,-0.0000275,0.00000966,-2.848180341,0.004690852,neg,ns,0.002740646,0.002828734,0.968859404,0.333370627,pos,ns,0.477072668,-0.00000806,0.0000973,-0.082817759,0.934049898,neg,ns,0.136608971,Fgf9,Fgf9_Exon,14,58073242,58073291,58073242,58073243,50,-,CGGAGGCAGCTATACTGCAGGACTGGATTTCACTTAGAAATCTTCCCCAA,"Exon (Fgf9-201/Fgf9, exon 1 of 3)",14,58070547,58112720,42174,1,Fgf9-203,2695,Fgf9-203;Fgf9-201;Fgf9-202;Fgf9-204,Fgf9;Fgf9;Fgf9;Fgf9,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,8,14180,ENSMUSG00000021974,conserved gene and region,14,58073088,58073243,156,*,156,14,0.641025641,0.902852418,0.08974359,2.46E-10,CpGisland,TRUE,U13,Hc-P
11226,cg13625573,-0.00000719,0.00000555,-1.294738029,0.196374133,loss,ns,0.0000269,0.00000944,2.847072006,0.00470679,pos,ns,0.000267983,0.002764369,0.096941885,0.92283519,pos,ns,0.034875853,-0.0000406,0.0000951,-0.427128041,0.669582576,neg,ns,0.903056877,Satb2,Satb2_Intergenic_upstream,1,57083224,57083273,57083272,57083273,50,-,GGTCACCGCAAAGTGTTTCTGTTGCTGCGGTAGACTGCAGTTAGGGAGCG,Distal Intergenic,1,56969740,56978650,8911,2,Satb2-204,-104623,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,33,212712,ENSMUSG00000038331,mapped to different genes,1,57083151,57083321,171,*,171,10,0.532163743,0.855855856,0.058479532,0.00000878,CpGisland,TRUE,U15,NS
25709,cg07382457,0.000074,0.0000067,11.05034451,3.72E-24,gain,yes,-0.0000324,0.0000114,-2.846433943,0.004715988,neg,ns,0.011612137,0.003332489,3.484524152,0.000564051,pos,ns,3.248681588,-0.000152835,0.000114604,-1.333591255,0.183316881,neg,ns,0.729057297,Nek7,Nek7_Intron,1,138500320,138500369,138500368,138500369,50,-,CAGCAGCTGAATTTTTCAGGCTAATTTGATCCTCCACACTGAGACGATCG,"Intron (Nek7-202/Nek7, intron 8 of 9)",1,138482875,138619749,136875,2,Nek7-202,119380,Nek7-202;Nek7-203;Nek7-201,Nek7;Nek7;Nek7,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,9,59125,ENSMUSG00000026393,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22226,cg09882129,-0.00000454,0.0000081,-0.560331876,0.575657797,loss,ns,0.0000392,0.0000138,2.846208946,0.004719236,pos,ns,0.003724668,0.00403094,0.924019758,0.356194702,pos,ns,0.448312545,-0.000227454,0.000138624,-1.640800568,0.101852998,neg,ns,0.616359805,Cryba4,Cryba4_Intergenic_downstream,5,112050638,112050687,112050686,112050687,50,+,AATTGCCTGCTAAAATTGTCGCTGTCTCCTAAAGTGCAAATTATCACCCG,Distal Intergenic,5,112246494,112251162,4669,2,Cryba4-202,200475,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,8,12959,ENSMUSG00000066975,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10925,cg05035746,-0.0000023,0.00000114,-2.009598142,0.045340044,loss,ns,0.00000552,0.00000194,2.845823429,0.004724804,pos,ns,0.001445211,0.000568579,2.541794105,0.011515187,pos,ns,1.938729,-0.000042,0.0000196,-2.148349915,0.032460453,neg,ns,0.97295184,Tcf7l2,Tcf7l2_Intron,19,55888836,55888885,55888884,55888885,50,-,CATTATTCTTGGAATATCCAATTAATTCCACGGGCAGTGATCAGTTAGCG,"Intron (Tcf7l2-213/Tcf7l2, intron 4 of 13)",19,55741820,55933229,191410,1,Tcf7l2-213,147016,Tcf7l2-213;Tcf7l2-201;Tcf7l2-208;Tcf7l2-211;Tcf7l2-212;Tcf7l2-206;Tcf7l2-204;Tcf7l2-205;Tcf7l2-222;Tcf7l2-215;Tcf7l2-214;Tcf7l2-207;Tcf7l2-202;Tcf7l2-209;Tcf7l2-210;Tcf7l2-217;Tcf7l2-220,Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,55,88,21416,ENSMUSG00000024985,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5685,cg10822431,0.0000288,0.00000402,7.167360715,5.62E-12,gain,yes,-0.0000194,0.00000683,-2.845589827,0.004728182,neg,ns,0.003651365,0.002001697,1.824134823,0.069094268,pos,ns,1.160557979,-0.000115075,0.0000688,-1.671672391,0.095597986,neg,ns,0.8717697,Mapkap1,Mapkap1_Intron,2,34556828,34556877,34556828,34556829,50,-,CGATTTTTTGCCATTAGGCTGGGGCTGAATGATGGTGATTTGGTTGAGGC,"Intron (Mapkap1-204/Mapkap1, intron 6 of 10)",2,34406862,34623475,216614,1,Mapkap1-204,149966,Mapkap1-204;Mapkap1-202;Mapkap1-201;Mapkap1-209;Mapkap1-203,Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,59,227743,ENSMUSG00000038696,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
63,cg05703789,0.00000299,0.00000204,1.465977687,0.143667948,gain,ns,-0.00000985,0.00000346,-2.845577228,0.004728364,neg,ns,0.004049496,0.001014093,3.993219129,0.0000815,pos,ns,4.089095839,-0.000111368,0.0000349,-3.193378953,0.00155068,neg,ns,0.955033682,Kmt5b,Kmt5b_threeUTR,19,3807266,3807315,3807266,3807267,50,+,CGCCTGCTCCTGTTATCAATAGCAAATATGGACTCAGAGAAACAGATAAA,3' UTR,19,3767421,3808829,41409,1,Kmt5b-202,39845,Kmt5b-202;Kmt5b-205;Kmt5b-207;Kmt5b-206;Kmt5b-208;Kmt5b-203;Kmt5b-204;Kmt5b-201;Kmt5b-221;Kmt5b-210;Kmt5b-213;Kmt5b-216;Kmt5b-219;Kmt5b-220;Kmt5b-218;Kmt5b-212,Kmt5b;Kmt5b;Kmt5b;Kmt5b;Kmt5b;Kmt5b;Kmt5b;Kmt5b;Kmt5b;Kmt5b;Kmt5b;Kmt5b;Kmt5b;Kmt5b;Kmt5b;Kmt5b,0;0;0;0;0;0;0;0;0;0;0;0;0;5193;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,3,225888,ENSMUSG00000045098,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2270,cg11371756,-0.00000218,0.00000961,-0.227102332,0.820493863,loss,ns,-0.0000465,0.0000163,-2.845096049,0.004735328,neg,ns,0.012594996,0.004784856,2.632262288,0.008906484,pos,ns,2.05029371,-0.000206709,0.000164551,-1.256203511,0.209988052,neg,ns,0.764338491,Meis1,Meis1_threeUTR,11,18881011,18881060,18881011,18881012,50,+,CGATTTACATCTGTTCAGGCCAATTCAAATATGGTGAGTAAATGAATTAG,3' UTR,11,18879817,19018985,139169,2,Meis1-206,137925,Meis1-206;Meis1-202;Meis1-209;Meis1-201;Meis1-203;Meis1-208;Meis1-207,Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,12,88,17268,ENSMUSG00000020160,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13822,cg07933800,0.0000503,0.00000336,14.97461956,1.60E-38,gain,yes,-0.0000162,0.0000057,-2.844390558,0.004745555,neg,ns,0.001828525,0.00167079,1.094407039,0.274626107,pos,ns,0.56125818,0.0000405,0.0000575,0.704963911,0.481362012,pos,ns,0.112854349,Six1,Six1_Exon,12,73045888,73045937,73045888,73045889,50,+,CGGTCTCTTTGCCTCCGGTTCTTAAACCAGTTGCTGACCTGGGTGGTGGT,"Exon (Six1-201/Six1, exon 1 of 2)",12,73041827,73047179,5353,2,Six1-201,1242,Six1-204;Six1-201;Six1-203;Six1-202,Six1;Six1;Six1;Six1,0;0;0;-597,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,18,20471,ENSMUSG00000051367,conserved gene and region,12,73045722,73046158,437,*,437,46,0.679633867,0.912400145,0.105263158,2.63E-36,CpGisland,TRUE,U3,Pr-B
12992,cg18884468,-0.00000382,0.00000391,-0.977805956,0.328932739,loss,ns,0.0000189,0.00000664,2.843714766,0.00475537,pos,ns,0.005573083,0.001944342,2.86630725,0.00443705,pos,ns,2.352905716,-0.000170904,0.0000669,-2.555923513,0.0110674,neg,ns,0.926391623,Kpna4,Kpna4_threeUTR,3,69073968,69074017,69073968,69073969,50,+,CGATTTAATGCAGCAGCAGATCCCATGAGCCAAGCTTGATGGATCAAACC,3' UTR,3,69067149,69127113,59965,2,Kpna4-201,53096,Kpna4-201;Kpna4-203,Kpna4;Kpna4,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,5,16649,ENSMUSG00000027782,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2975,cg16353470,-0.00000145,0.00000508,-0.2844218,0.776277049,loss,ns,-0.0000245,0.00000863,-2.843336263,0.004760876,neg,ns,-0.006655725,0.002529089,-2.631669436,0.008921692,neg,ns,2.049552788,0.000176275,0.000087,2.026725738,0.04354617,pos,ns,0.855572078,Lrmda,Lrmda_Intron,14,22198768,22198817,22198768,22198769,50,+,CGTATGGGCTGCTTAGGAGGACAGGGACCTGCCTGATAATGGACACATTT,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,179056,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206,Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24540,cg05928373,-0.0000401,0.00000763,-5.258113332,0.000000272,loss,yes,-0.0000368,0.000013,-2.843220305,0.004762564,neg,ns,-0.007602073,0.003795713,-2.002804847,0.046068683,neg,ns,1.336594201,-0.000379812,0.000130534,-2.909673589,0.003879815,neg,ns,0.781657585,Taok2,Taok2_Exon,7,126868284,126868333,126868284,126868285,50,-,CGTCTCCTGGAACTGCTTCTTGATCTGCAGCTCCTTAGACTATGCAGTGG,"Exon (Taok2-205/Taok2, exon 3 of 5)",7,126865678,126871641,5964,2,Taok2-205,3308,Hirip3-201;Hirip3-207;Hirip3-206;Hirip3-202;Hirip3-203;Hirip3-204;Hirip3-205;Taok2-205;Taok2-201;Taok2-203;Taok2-202,Hirip3;Hirip3;Hirip3;Hirip3;Hirip3;Hirip3;Hirip3;Taok2;Taok2;Taok2;Taok2,6312;5845;5820;5817;5803;4441;3868;0;0;-1028;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,11,381921,ENSMUSG00000059981,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14057,cg12321152,0.0000698,0.0000129,5.422369537,0.000000119,gain,yes,-0.0000621,0.0000219,-2.842454883,0.004773719,neg,ns,0.033820158,0.006404006,5.281094036,0.000000242,pos,ns,6.615829213,-0.000928849,0.000220233,-4.217569654,0.0000325,neg,ns,0.473322344,Cnot9,Cnot9_Exon,1,74528774,74528823,74528774,74528775,50,+,CGCTGGCTTGCACAACTGGTGAAGAACCTGCAAGAGGGCCAGGTCACCGA,"Exon (Cnot9-201/Cnot9, exon 8 of 8)",1,74506058,74530842,24785,1,Cnot9-201,22716,Cnot9-201;Cnot9-202;Cnot9-203;Usp37-205,Cnot9;Cnot9;Cnot9;Usp37,0;22714;5247;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,58184,ENSMUSG00000026174,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
201,cg17035304,-0.00000848,0.0000105,-0.809130129,0.41906087,loss,ns,0.0000506,0.0000178,2.842408902,0.004774389,pos,ns,0.005452309,0.005214098,1.04568596,0.296520718,pos,ns,0.527944957,-0.0000352,0.000179312,-0.196490036,0.84435538,neg,ns,0.406486431,Cabp7,Cabp7_Promoter,11,4753050,4753099,4753050,4753051,50,+,CGTTACTAATTGGATCGTTAGAGATTTGTGCTTTATGGCTGTGTAATTAG,Promoter (6-7kb),11,4736892,4746778,9887,2,Cabp7-201,-6272,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,3,192650,ENSMUSG00000009075,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9318,cg05030567,-0.000053,0.0000154,-3.43445989,0.000674569,loss,ns,0.0000745,0.0000262,2.841921593,0.004781504,pos,ns,0.007013964,0.007678626,0.913439985,0.361721049,pos,ns,0.441626218,-0.000623459,0.000264067,-2.360984586,0.018845085,neg,ns,0.655902778,Nxpe4,Nxpe4_Intergenic_upstream,9,48113979,48114028,48113979,48113980,50,-,CGTTTGACAGCCAATGGCATGAGGAAATGAAAGAATACCTTGAAAGTAGA,Distal Intergenic,9,48162023,48399871,237849,1,Nxpe4-203,-48044,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,7,244853,ENSMUSG00000044229,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24247,cg05915139,0.0000431,0.00000701,6.14651255,2.43E-09,gain,yes,-0.0000339,0.0000119,-2.841848265,0.004782576,neg,ns,0.001655652,0.003490219,0.474369163,0.635570646,pos,ns,0.196836169,-0.00027724,0.000120028,-2.309789184,0.021556585,neg,ns,0.60791814,Pitpnm2,Pitpnm2_Intron,5,124206729,124206778,124206729,124206730,50,+,CGCTGGGATAATGGCAAGGCCAGAAATAGCCTTGAAGACATTCACGTGAA,"Intron (Pitpnm2-201/Pitpnm2, intron 1 of 23)",5,124118690,124216418,97729,2,Pitpnm2-201,9640,Pitpnm2-201;Pitpnm2-210;Pitpnm2-205,Pitpnm2;Pitpnm2;Pitpnm2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,4,19679,ENSMUSG00000029406,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4029,cg20011459,0.0000273,0.000122621,0.222480908,0.824086042,gain,ns,-0.000591853,0.000208316,-2.841131311,0.004793064,neg,ns,0.042914086,0.061029533,0.703169176,0.482478071,pos,ns,0.316522421,-0.004044186,0.002098801,-1.926903238,0.054905481,neg,ns,0.670025573,Fbxl7,Fbxl7_Exon,15,26543736,26543785,26543736,26543737,50,+,CGGATGGAAATCTGTTTGCCATGCAAGGGTGACAGTTTAATGGAGGCCTC,"Exon (Fbxl7-201/Fbxl7, exon 4 of 4)",15,26540459,26895580,355122,2,Fbxl7-201,351795,Fbxl7-201,Fbxl7,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,448987,ENSMUSG00000043556,conserved gene and region,15,26543610,26543737,128,*,128,11,0.59375,1,0.0859375,5.43E-08,CpGisland,TRUE,U15,NS
14456,cg00802789,-0.0000116,0.0000047,-2.476196,0.013812689,loss,ns,-0.0000227,0.00000798,-2.84020689,0.004806617,neg,ns,-0.004469336,0.002338568,-1.911141865,0.056908418,neg,ns,1.24482349,0.0000347,0.0000804,0.431784257,0.666198374,pos,ns,0.876742525,Ell2,Ell2_Exon,13,75750043,75750092,75750043,75750044,50,+,CGCAACCGAAGCACAAAAGTTATCAAACCCGGTGGACCATATGTAGGTTT,"Exon (Ell2-201/Ell2, exon 4 of 12)",13,75706757,75772364,65608,1,Ell2-201,43286,Ell2-201;Ell2-202;Ell2-205;Ell2-203;Ell2-209;Ell2-207;Ell2-208,Ell2;Ell2;Ell2;Ell2;Ell2;Ell2;Ell2,0;0;0;42332;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,192657,ENSMUSG00000001542,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16706,cg04518304,-0.00000249,0.0000165,-0.151131978,0.879969905,loss,ns,0.0000795,0.000028,2.839295651,0.004820011,pos,ns,0.0177528,0.00820644,2.163276606,0.031283855,pos,ns,1.504679733,-0.0000837,0.000282219,-0.296594239,0.766974923,neg,ns,0.218888991,Gpatch2l,Gpatch2l_Intergenic_upstream,12,86214449,86214498,86214449,86214450,50,-,CGCTGCCAGCTTCATTATTCGCTTAAGTTGCCGGAGAGAATTACTTAACC,Distal Intergenic,12,86241858,86291784,49927,1,Gpatch2l-204,-27409,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,13,17,70373,ENSMUSG00000021254,conserved gene but different region,12,86214265,86214574,310,*,310,23,0.54516129,1.024719747,0.074193548,7.83E-15,CpGisland,TRUE,U13,Hc-P
2690,cg04490547,-0.00000204,0.00000414,-0.49367312,0.621886627,loss,ns,-0.00002,0.00000703,-2.838894451,0.004825919,neg,ns,-0.003866233,0.002060969,-1.875929548,0.061604506,neg,ns,1.210387522,-0.0000894,0.0000709,-1.262019857,0.207890306,neg,ns,0.865874389,Ilf3,Ilf3_Exon,9,21393739,21393788,21393739,21393740,50,+,CGTTCTGGACAGGCAGAAATGCCTTGCTGCCTTGGCGTCCCTCCGACACG,"Exon (Ilf3-201/Ilf3, exon 6 of 20)",9,21367871,21405360,37490,1,Ilf3-201,25868,Ilf3-201;Ilf3-203;Ilf3-206;Ilf3-213;Ilf3-210;Ilf3-202;Ilf3-204;Ilf3-208;Ilf3-209;Ilf3-216;Ilf3-211,Ilf3;Ilf3;Ilf3;Ilf3;Ilf3;Ilf3;Ilf3;Ilf3;Ilf3;Ilf3;Ilf3,0;0;0;0;25736;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,11,16201,ENSMUSG00000032178,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23186,cg27402320,0.000058,0.00000722,8.033104526,2.00E-14,gain,yes,-0.0000348,0.0000123,-2.838711076,0.004828622,neg,ns,0.003661544,0.003593302,1.018991502,0.309001582,pos,ns,0.510039298,-0.000196076,0.000123573,-1.586714388,0.113596796,neg,ns,0.554042603,Rnf220,Rnf220_Intron,4,117409782,117409831,117409830,117409831,50,-,TGATCCTTTCATAAAGAGAGTTTCTGGTGTCAGGAGACAGCCGCCCAGCG,"Intron (Rnf220-201/Rnf220, intron 2 of 14)",4,117271463,117497052,225590,2,Rnf220-201,87221,Rnf220-201;Rnf220-207,Rnf220;Rnf220,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10669,cg12309411,-0.0000152,0.0000035,-4.33647223,0.0000196,loss,ns,-0.0000169,0.00000594,-2.838671293,0.004829208,neg,ns,0.002242555,0.001741137,1.287983329,0.198712348,pos,ns,0.701775144,-0.000109852,0.0000599,-1.834615013,0.067520942,neg,ns,0.926547907,Ireb2,Ireb2_threeUTR,9,54909917,54909966,54909917,54909918,50,+,CGAATGGTGCTATTAATATTGCTAAAATCAACGTGTGAAGTGTGTTGTGG,3' UTR,9,54863789,54912530,48742,1,Ireb2-201,46128,Ireb2-201;Ireb2-202,Ireb2;Ireb2,0;7712,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,64602,ENSMUSG00000032293,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9079,cg11346223,0.00000732,0.0000156,0.468419263,0.639813987,gain,ns,0.0000753,0.0000265,2.838485613,0.004831947,pos,ns,0.006918122,0.007774371,0.889862552,0.374229733,pos,ns,0.426861711,-0.000142632,0.00026736,-0.533481541,0.594082566,neg,ns,0.521788762,Gm13469,Gm13469_Intergenic_upstream,2,46802941,46802990,46802989,46802990,50,+,AAGACAGTAAGCGGATGTTAACTTCCCACTGAGAGAATTTCTCCAGGTCG,Distal Intergenic,2,46406220,46406569,350,2,Gm13469-201,-396372,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,20,27,383690,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21327,cg23050114,-0.00000184,0.00000149,-1.235777077,0.217477053,loss,ns,0.0000072,0.00000254,2.838175676,0.00483652,pos,ns,0.002474997,0.000742842,3.33179445,0.00096727,pos,ns,3.014452486,-0.0000744,0.0000255,-2.913259616,0.003836724,neg,ns,0.967727675,Nfat5,Nfat5_threeUTR,8,107339252,107339301,107339252,107339253,50,-,CGAGATTGTGAAGAATCTAATATGGATATATTTGATGCCGACAGTGCCAA,3' UTR,8,107293470,107372227,78758,1,Nfat5-213,45782,Nfat5-213;Nfat5-214;Nfat5-206;Nfat5-211;Nfat5-203;Nfat5-201;Nfat5-209;Nfat5-205;Nfat5-202;Nfat5-207,Nfat5;Nfat5;Nfat5;Nfat5;Nfat5;Nfat5;Nfat5;Nfat5;Nfat5;Nfat5,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,13,17,54446,ENSMUSG00000003847,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2454,cg02340863,0.0000729,0.0000135,5.382623746,0.000000145,gain,yes,0.0000653,0.000023,2.837863113,0.004841137,pos,ns,0.023780347,0.00674077,3.527838313,0.000482346,pos,ns,3.316640884,-0.000354344,0.000231815,-1.528567084,0.127391498,neg,ns,0.507462227,Rorb,Rorb_Intergenic_upstream,19,19565011,19565060,19565011,19565012,50,-,CGCTGGGTTGTTAATAGGCAGTGATTCTTCAATGCTCCTTCAGTGAAGTT,Distal Intergenic,19,18930605,19111196,180592,2,Rorb-203,-453864,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,10,225998,ENSMUSG00000036192,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
542,cg05731834,0.0000395,0.00000469,8.422375459,1.39E-15,gain,yes,-0.0000226,0.00000796,-2.837835173,0.00484155,neg,ns,0.002191959,0.002333223,0.939455253,0.348228469,pos,ns,0.458135726,0.0000211,0.0000802,0.262778208,0.792896086,pos,ns,0.075067512,Dlx6,Dlx6_Promoter,6,6862958,6863007,6862958,6862959,50,+,CGTCTGCATCAAGTCTGAAAGCAGACGCGCAACTTTCGCAGAATCCACCT,Promoter (<=1kb),6,6863334,6867970,4637,1,Dlx6-203,-327,Dlx6-203;Dlx6-202;Dlx6-201;Dlx6-204,Dlx6;Dlx6;Dlx6;Dlx6,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,9,36,13396,ENSMUSG00000029754,conserved gene but different region,6,6862843,6862995,153,*,153,14,0.581699346,1.081818182,0.091503268,1.88E-10,CpGisland,TRUE,U3,Pr-B
5500,cg09137307,-0.00000663,0.00000224,-2.963801764,0.003274128,loss,ns,0.0000108,0.0000038,2.837503909,0.004846447,pos,ns,-0.000125688,0.001113003,-0.112927085,0.910161455,neg,ns,0.04088156,0.0000217,0.0000383,0.567717142,0.570637974,pos,ns,0.934951534,Mtdh,Mtdh_Exon,15,34114843,34114892,34114843,34114844,50,-,CGTAAACGTGATAAGGTGCTGACTGATTCTGGTTCATTGGATTCAACTAT,"Exon (Mtdh-201/Mtdh, exon 4 of 12)",15,34082719,34145624,62906,1,Mtdh-201,32124,Mtdh-201;Mtdh-203;Mtdh-204;Mtdh-202;Mtdh-206;Mtdh-207;Mtdh-210;Mtdh-211;Mtdh-205,Mtdh;Mtdh;Mtdh;Mtdh;Mtdh;Mtdh;Mtdh;Mtdh;Mtdh,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,3,67154,ENSMUSG00000022255,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18048,cg09933182,-0.00000251,0.00000179,-1.405433257,0.160893859,loss,ns,0.00000862,0.00000304,2.837194113,0.004851031,pos,ns,0.002382051,0.000889583,2.677716412,0.007807533,pos,ns,2.107486189,-0.0000451,0.0000306,-1.473362346,0.141668006,neg,ns,0.943710352,Pola1,Pola1_Intron,X,93409563,93409612,93409563,93409564,50,+,CGATTAGGCGATAAATGGACTCGCTTTGAATTGAAGTGAATGCACCCGTT,"Intron (Pola1-201/Pola1, intron 35 of 36)",20,93304767,93632155,327389,2,Pola1-201,222543,Pola1-201,Pola1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,59,62,18968,ENSMUSG00000006678,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21439,cg18982157,0.00000343,0.00000283,1.21077463,0.226904067,gain,ns,-0.0000136,0.00000481,-2.835974619,0.004869115,neg,ns,0.009764156,0.001407994,6.934798156,2.37E-11,pos,yes,10.62467659,-0.000310914,0.0000484,-6.42108309,5.08E-10,neg,yes,0.940027698,Rbm5,Rbm5_threeUTR,9,107759832,107759881,107759832,107759833,50,+,CGAAACCACGGCTTACACCTAGAGACAGCATTCAGATATAGACGGGATAC,3' UTR,9,107740371,107770996,30626,2,Rbm5-214,11115,Rbm5-214;Rbm5-219;Rbm5-224;Rbm5-210;Rbm5-201;Rbm5-211;Rbm5-221;Rbm5-220;Rbm5-223;Rbm5-208;Rbm5-203;Rbm5-204;Rbm5-218,Rbm5;Rbm5;Rbm5;Rbm5;Rbm5;Rbm5;Rbm5;Rbm5;Rbm5;Rbm5;Rbm5;Rbm5;Rbm5,0;0;0;0;0;0;0;0;0;0;0;11078;11064,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,11,83486,ENSMUSG00000032580,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5917,cg23826080,-0.00000614,0.00000687,-0.893270485,0.37240526,loss,ns,0.0000331,0.0000117,2.835865145,0.004870741,pos,ns,0.00309129,0.003421367,0.903524748,0.366949019,pos,ns,0.435394269,0.000195802,0.000117661,1.664124122,0.097098067,pos,ns,0.925050404,Ddx39b,Ddx39b_Exon,17,35248992,35249041,35249040,35249041,50,+,CACGAGAAGCAGGTCATGATGTTCAGTGCTACCTTGAGCAAAGAGATCCG,"Exon (Ddx39b-201/Ddx39b, exon 6 of 11)",17,35241746,35253707,11962,1,Ddx39b-201,7246,Ddx39b-201;Ddx39b-205;Ddx39b-204;Ddx39b-203;Ddx39b-202,Ddx39b;Ddx39b;Ddx39b;Ddx39b;Ddx39b,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,53817,ENSMUSG00000019432,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2500,cg15898239,-0.0000107,0.00000981,-1.086561883,0.278074623,loss,ns,0.0000473,0.0000167,2.835315234,0.004878918,pos,ns,-0.004370899,0.004884167,-0.894911886,0.371528499,neg,ns,0.430007867,0.000146583,0.000167966,0.872693347,0.383505692,pos,ns,0.719390288,Anxa1,Anxa1_Intron,19,20024881,20024930,20024881,20024882,50,-,CGGTTTAATTAGGCTAACTACAGGTAAGGGAATCCTATGGTACAGGGAGG,"Intron (Gm3728-201/Gm3728-201, intron 2 of 3)",19,20373556,20375587,2032,2,Anxa1-202,350706,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,8,16952,ENSMUSG00000024659,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23766,cg25438282,0.000155298,0.00000982,15.82120875,9.63E-42,gain,yes,-0.0000473,0.0000167,-2.835047493,0.004882904,neg,ns,0.002294306,0.004885437,0.46962132,0.638955745,pos,ns,0.194529221,0.000195752,0.00016801,1.165123858,0.244864614,pos,ns,0.139651575,Foxo6,Foxo6_Exon,4,120286841,120286890,120286889,120286890,50,+,TCCAGCCGGCCGAGCTGTTGCTGTCGCCTTTATCCTTGAAGTAGGGCACG,Promoter (<=1kb),4,120267079,120287349,20271,2,Foxo6-201,459,Foxo6-201,Foxo6,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,42,329934,ENSMUSG00000052135,conserved gene and region,4,120286820,120288190,1371,*,1371,160,0.728665208,0.879452187,0.116703136,1.00E-132,CpGisland,TRUE,U3,Pr-B
1927,cg23804001,0.0000327,0.0000172,1.904345546,0.057790746,gain,ns,-0.0000828,0.0000292,-2.834965276,0.004884128,neg,ns,0.064237966,0.008554543,7.50922235,6.38E-13,pos,yes,12.19496572,-0.001538972,0.00029419,-5.231216641,0.000000311,neg,yes,0.365429764,Rarb,Rarb_threeUTR,14,16432210,16432259,16432258,16432259,50,+,ATGAGAGGTGGCATTGATCCAGGAATTTCCATTTTCAAGGTAATTACACG,3' UTR,14,16430839,16575543,144705,2,Rarb-201,143284,Rarb-201;Rarb-207;Rarb-202;Top2b-201;Top2b-206;Top2b-207,Rarb;Rarb;Rarb;Top2b;Top2b;Top2b,0;0;0;0;8922;6782,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,16,218772,ENSMUSG00000017491,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4025,cg23447988,-0.0000224,0.00000877,-2.556905161,0.011036875,loss,ns,0.0000422,0.0000149,2.834908809,0.004884969,pos,ns,-0.003668676,0.004362745,-0.840909927,0.401046547,neg,ns,0.396805219,0.000284452,0.000150034,1.895908056,0.058902007,pos,ns,0.597312479,Gm45647,Gm45647_Intergenic_upstream,8,26526628,26526677,26526628,26526629,50,+,CGCTGATTAATTGACAGGTTAAAAAGATTGATTCCACATGTCAGAGCTGT,Distal Intergenic,8,26780315,26780509,195,1,Gm45647-201,-253638,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,46,62,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23181,cg15939697,0.000112877,0.0000162,6.956198801,2.08E-11,gain,yes,-0.0000781,0.0000276,-2.834247836,0.004894826,neg,ns,0.008529515,0.008076252,1.056122845,0.291734445,pos,ns,0.535012291,-0.000295192,0.000277742,-1.062829807,0.288686371,neg,ns,0.351199664,Rnf220,Rnf220_Intron,4,117391632,117391681,117391680,117391681,50,+,GCGCTAATAATTTGCCAAATTTGCGCCCATAATATGATATCTGTAAAACG,"Intron (Rnf220-201/Rnf220, intron 2 of 14)",4,117271463,117497052,225590,2,Rnf220-201,105371,Rnf220-201;Rnf220-207,Rnf220;Rnf220,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7694,cg19803349,0.000217888,0.0000232,9.402055668,1.23E-18,gain,yes,-0.000111564,0.0000394,-2.833707582,0.004902895,neg,ns,0.077446474,0.011534183,6.714517482,9.01E-11,pos,yes,10.04543619,-0.002444735,0.00039666,-6.163306171,2.21E-09,neg,yes,0.322191544,Fbxl5,Fbxl5_Exon,5,43745312,43745361,43745312,43745313,50,-,CGGCAGCAGGCTCGAAAACCACACTGCAAATTCTGGCATCCACTGGCGGT,"Exon (Fbxl5-204/Fbxl5, exon 11 of 11)",5,43744615,43782143,37529,2,Fbxl5-204,36782,Cc2d2a-201;Fbxl5-204;Fbxl5-209;Fbxl5-211;Fbxl5-201;Fbxl5-203,Cc2d2a;Fbxl5;Fbxl5;Fbxl5;Fbxl5;Fbxl5,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,242960,ENSMUSG00000039753,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23590,cg22143407,0.0000105,0.00000818,1.282557447,0.200605341,gain,ns,0.0000393,0.0000139,2.832696222,0.004918033,pos,ns,-0.001044932,0.004068952,-0.256806256,0.797498696,neg,ns,0.098270019,0.000145167,0.000139931,1.037417395,0.30034989,pos,ns,0.52902488,Med13l,Med13l_Intergenic_downstream,5,119143705,119143754,119143705,119143706,50,+,CGTCCGGAAAGCAAATAACCCCAAATGAGAAGATTGGATTTAGTGTGGTC,Distal Intergenic,5,118750387,118763916,13530,1,Med13l-206,393318,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,16,76199,ENSMUSG00000018076,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5228,cg04423730,-0.0000595,0.0000211,-2.818759629,0.005131013,loss,ns,0.000101529,0.0000358,2.832611806,0.004919299,pos,ns,0.022216495,0.010500728,2.115710039,0.035166636,pos,ns,1.453869169,-0.000708812,0.000361119,-1.962819004,0.050561179,neg,ns,0.403264881,Cdhr3,Cdhr3_Intron,12,33035894,33035943,33035894,33035895,50,-,CGTTTGCATATGAGGGTGGCAGGAAGCCAACACACTTGCCTCCTGAATTT,"Intron (Cdhr3-201/Cdhr3, intron 18 of 19)",12,33033796,33092875,59080,2,Cdhr3-201,56932,Cdhr3-201,Cdhr3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,68764,ENSMUSG00000035860,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23172,cg19546940,0.0000584,0.0000104,5.628955356,4.06E-08,gain,yes,-0.0000499,0.0000176,-2.832581162,0.004919758,neg,ns,-0.002001164,0.005159794,-0.38783796,0.698402124,neg,ns,0.155894448,-0.0000434,0.000177445,-0.244587615,0.806937567,neg,ns,0.58789201,Rnf220,Rnf220_Intron,4,117380176,117380225,117380176,117380177,50,-,CGTTATATACTGCACAAGTGTTGTTTTCTTGCCAATTATCTGCAGGCGGA,"Intron (Rnf220-201/Rnf220, intron 2 of 14)",4,117271463,117497052,225590,2,Rnf220-201,116827,Rnf220-201;Rnf220-202;Rnf220-207,Rnf220;Rnf220;Rnf220,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18276,cg05844902,-0.0000815,0.0000202,-4.037552067,0.0000681,loss,ns,0.0000971,0.0000343,2.83213171,0.004926502,pos,ns,-0.008130195,0.01004235,-0.809590913,0.418796305,neg,ns,0.377997159,0.000834474,0.000345356,2.416273705,0.016257814,pos,ns,0.330894959,Slc9a9,Slc9a9_Exon,9,94670152,94670201,94670200,94670201,50,+,CTCATCCTTACCATTTTGACAATCTGGTTATTTAAAAATCATCGATTCCG,Promoter (<=1kb),9,94669909,95230445,560537,1,Slc9a9-201,243,Slc9a9-201;Slc9a9-203,Slc9a9;Slc9a9,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,3,331004,ENSMUSG00000031129,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6350,cg16143065,-0.00000414,0.00000286,-1.444091991,0.149722981,loss,ns,-0.0000138,0.00000487,-2.83200779,0.004928362,neg,ns,-0.002525923,0.001425686,-1.77172462,0.0774226,neg,ns,1.111132246,-0.0000266,0.000049,-0.542719953,0.587712599,neg,ns,0.930375119,Tshz3,Tshz3_Intergenic_downstream,7,36966997,36967046,36966997,36966998,50,-,CGGTCAAGTTTGCTTCATGGGTTTATCGTGTTGTATTAACATGATAGAAA,Distal Intergenic,7,36698217,36702113,3897,1,Tshz3-202,268829,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,21,58,243931,ENSMUSG00000021217,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6865,cg12887865,-0.00000508,0.00000312,-1.630257409,0.104062686,loss,ns,0.000015,0.00000529,2.831980451,0.004928773,pos,ns,0.003940247,0.001551193,2.540139507,0.011568667,pos,ns,1.936716667,-0.000114488,0.0000533,-2.146162458,0.032636041,neg,ns,0.932237734,Slc35b3,Slc35b3_Intergenic_upstream,13,39015781,39015830,39015829,39015830,50,+,CATAAATTTTGCATTTGCACAGACAGTATTTTAAACGTTTTACTGCTTCG,Distal Intergenic,13,38932136,38960875,28740,2,Slc35b3-201,-54906,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,9,11,108652,ENSMUSG00000021432,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26601,cg22978368,0.0000297,0.00000434,6.826537466,4.59E-11,gain,yes,-0.0000209,0.00000738,-2.831778168,0.004931812,neg,ns,0.00088686,0.002161939,0.41021504,0.681931566,pos,ns,0.166259206,0.0000126,0.0000743,0.169927001,0.865178385,pos,ns,0.917839941,Pex14,Pex14_Intron,4,148973075,148973124,148973075,148973076,50,+,CGTTAAGAACATTTTATTGCCCCCTGGTTTTCATTATTAATGAAAAGGGA,"Intron (Gm17029-202/Gm17029-202, intron 2 of 2)",4,148960535,149099876,139342,2,Pex14-201,126752,Pex14-201;Pex14-202,Pex14;Pex14,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,41,48,56273,ENSMUSG00000028975,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12031,cg09421978,0.00000878,0.00000195,4.506055199,0.00000937,gain,ns,-0.00000938,0.00000331,-2.831482791,0.004936253,neg,ns,-0.003487631,0.000970066,-3.595252027,0.000376918,neg,ns,3.423753637,0.000103319,0.0000334,3.097061829,0.002133238,pos,ns,0.951725166,Dpp4,Dpp4_Intron,2,62431500,62431549,62431500,62431501,50,+,CGTTGTCACTTTGTGTGTTACATTTCCAAGCATAAGAAGTGTGAGTGAGT,"Intron (Gm13561-201/Gm13561-201, intron 1 of 4)",2,62330073,62412231,82159,2,Dpp4-201,-19269,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,6,13482,ENSMUSG00000035000,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10083,cg04481096,0.000191551,0.0000165,11.60202598,4.34E-26,gain,yes,-0.0000794,0.000028,-2.831330643,0.004938541,neg,ns,0.016152754,0.008217279,1.965705971,0.050224906,pos,ns,1.299080868,-0.000542837,0.000282592,-1.920925726,0.055658032,neg,ns,0.213631512,Gm28308,Gm28308_Exon,6,52164577,52164626,52164625,52164626,50,+,GTCAGGCACTCAGCGAGCGACGGCTGGCTATTGATAAAACCAATCTCTCG,"Exon (Hoxa2-201/Hoxa2, exon 1 of 2)",6,52163359,52213339,49981,2,Gm28308-201,48713,Gm28308-201;Hoxa2-201;Hoxa3-201,Gm28308;Hoxa2;Hoxa3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,30,103,,NA,mapped to different genes,6,52164510,52164668,159,*,159,10,0.496855346,1.023166023,0.062893082,0.00000467,CpGisland,TRUE,U3,Pr-B
4218,cg27590459,-0.00000588,0.00000211,-2.786296743,0.005659953,loss,ns,0.0000101,0.00000358,2.830593934,0.004949637,pos,ns,0.001727783,0.001049728,1.645935112,0.100790549,pos,ns,0.996580189,-0.0000218,0.0000361,-0.603002772,0.546947736,neg,ns,0.063109294,Rxra,Rxra_fiveUTR,2,27677244,27677293,27677292,27677293,50,-,GCAGACACAAGTAGTTTACATTGTTGGGCGACTTTTGCAACAACTCGCCG,Promoter (<=1kb),2,27677262,27761417,84156,1,Rxra-206,0,Rxra-204;Rxra-201;Rxra-206,Rxra;Rxra;Rxra,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,6,20181,ENSMUSG00000015846,conserved gene and region,2,27676993,27678034,1042,*,1042,159,0.777351248,1.01724699,0.152591171,7.74E-154,CpGisland,TRUE,NA,NRS
11078,cg21777070,0.000116248,0.0000104,11.19715977,1.15E-24,gain,yes,-0.0000499,0.0000176,-2.830268912,0.00495454,neg,ns,0.007185743,0.005167202,1.390644846,0.165330615,pos,ns,0.781646719,-0.000004,0.0001777,-0.022523015,0.982045244,neg,ns,0.12763327,Nkx2-1,Nkx2-1_Exon,12,56534950,56534999,56534950,56534951,50,+,CGGAGCCCCGAGGCCGCCGCCCTCCATGCCCACTTTCTTGTAGCTTTCCT,Promoter (<=1kb),12,56531958,56535106,3149,2,Nkx2-1-202,107,Nkx2-1-202;Nkx2-1-201,Nkx2-1;Nkx2-1,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,29,21869,ENSMUSG00000001496,mapped to different genes,12,56534575,56534968,394,*,394,56,0.766497462,0.967719298,0.14213198,2.10E-52,CpGisland,TRUE,U3,Pr-B
10482,cg09977861,0.00000615,0.00000742,0.828712778,0.407904548,gain,ns,0.0000357,0.0000126,2.830211345,0.004955409,pos,ns,-0.0011115,0.003693545,-0.30093037,0.763669326,neg,ns,0.117094653,0.0000385,0.000127021,0.302817659,0.762231921,pos,ns,0.817355865,Npas3,Npas3_Intron,12,53837542,53837591,53837542,53837543,50,-,CGAGTGCTTGACAGAGATAATCTCAGCAATCCCACGGGTGACCTTATCGT,"Intron (Npas3-204/Npas3, intron 4 of 10)",12,53248157,54069532,821376,1,Npas3-204,589385,Npas3-204;Npas3-201;Npas3-203,Npas3;Npas3;Npas3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,83,103,27386,ENSMUSG00000021010,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13585,cg16764906,-0.00000334,0.00000228,-1.462622554,0.144583755,loss,ns,0.000011,0.00000388,2.83015531,0.004956254,pos,ns,0.002125707,0.001136447,1.870485498,0.062358555,pos,ns,1.205103955,-0.0000248,0.0000391,-0.634920119,0.52594884,neg,ns,0.940105478,Hat1,Hat1_Exon,2,71421286,71421335,71421334,71421335,50,+,GTACCCAGACAAAACCCGGCCACGTGTAAGGTAATTGGCAGTATAACACG,"Exon (Hat1-202/Hat1, exon 7 of 11)",2,71388958,71441622,52665,1,Hat1-202,32328,Hat1-202;Hat1-201;Hat1-204,Hat1;Hat1;Hat1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,12,107435,ENSMUSG00000027018,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14547,cg20295353,-0.00000285,0.00000419,-0.679274001,0.497471119,loss,ns,0.0000202,0.00000713,2.829876224,0.004960469,pos,ns,0.000347613,0.002087715,0.166503839,0.86786901,pos,ns,0.061545819,0.0000122,0.0000718,0.170439805,0.864775453,pos,ns,0.922170425,Zbtb1,Zbtb1_Exon,12,76386817,76386866,76386865,76386866,50,+,TTATTTAAACATTCTGCCTGCCCTTTTCGATGTCCTAATTGTGGCCAGCG,"Exon (Zbtb1-201/Zbtb1, exon 2 of 2)",12,76370266,76396950,26685,1,Zbtb1-201,16551,Zbtb1-201,Zbtb1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,5,268564,ENSMUSG00000033454,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18078,cg24195523,-0.0000182,0.00000741,-2.45510561,0.01463331,loss,ns,0.0000356,0.0000126,2.829145559,0.004971518,pos,ns,0.011098234,0.003687872,3.009387172,0.002832574,pos,ns,2.54781872,-0.000269819,0.000126826,-2.127484436,0.034168897,neg,ns,0.866180801,Pola1,Pola1_Exon,X,93578091,93578140,93578091,93578092,50,-,CGATGTTAGTGATCTGCAATGCTAATGGAAGAACATTTAGCTCACACATG,"Exon (Pola1-201/Pola1, exon 21 of 37)",20,93304767,93632155,327389,2,Pola1-201,54015,Pola1-201,Pola1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,62,18968,ENSMUSG00000006678,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9842,cg05901467,-0.00000985,0.00000562,-1.752831932,0.080619362,loss,ns,0.000027,0.00000954,2.829128462,0.004971777,pos,ns,0.007082672,0.002796249,2.53291884,0.011804656,pos,ns,1.927946662,-0.000216104,0.0000962,-2.247276712,0.025325444,neg,ns,0.892035581,Tbc1d5,Tbc1d5_Intron,17,51071355,51071404,51071355,51071356,50,+,CGTCACTTATGTTTCTGATTAGCAAGGTGATTTATGCCACAATCACTAAA,"Intron (Tbc1d5-201/Tbc1d5, intron 2 of 21)",17,50733124,51179168,446045,2,Tbc1d5-201,107764,Tbc1d5-201;Tbc1d5-207;Tbc1d5-205;Tbc1d5-208;Tbc1d5-203;Tbc1d5-202;Tbc1d5-206;Tbc1d5-209,Tbc1d5;Tbc1d5;Tbc1d5;Tbc1d5;Tbc1d5;Tbc1d5;Tbc1d5;Tbc1d5,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,14,72238,ENSMUSG00000023923,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15345,cg08516652,-0.0000117,0.00000212,-5.546912707,6.24E-08,loss,yes,0.0000102,0.00000359,2.828594128,0.004979872,pos,ns,0.00075292,0.001052915,0.71508078,0.475097312,pos,ns,0.323217427,-0.0000328,0.0000362,-0.90674484,0.365246008,neg,ns,0.093394785,Dcaf5,Dcaf5_Exon,12,80436191,80436240,80436239,80436240,50,+,CCAGCCACTGGCCTCCATTGTTGGAGAATTCAATGGCATTGACACAGCCG,Promoter (<=1kb),12,80335848,80436601,100754,2,Dcaf5-201,361,Dcaf5-201;Dcaf5-202,Dcaf5;Dcaf5,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,6,320808,ENSMUSG00000049106,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
23420,cg25302064,-0.000130097,0.000014,-9.29510665,2.71E-18,loss,yes,0.0000673,0.0000238,2.828439032,0.004982224,pos,ns,0.017374883,0.006966102,2.494204423,0.01314458,pos,ns,1.881253273,-0.001752864,0.000239564,-7.316902162,2.19E-12,neg,yes,0.550674797,Dpyd,Dpyd_Intergenic_upstream,3,118325216,118325265,118325264,118325265,50,-,CTTCCCATGTTATGTGTTGCCAGGCAATCAGGGCAGAAATAATTAACACG,Distal Intergenic,3,118562129,119432924,870796,1,Dpyd-201,-236913,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,29,99586,ENSMUSG00000033308,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6349,cg18624139,0.0000395,0.00000802,4.927813958,0.00000136,gain,yes,0.0000385,0.0000136,2.827993797,0.004988981,pos,ns,0.006666929,0.003991908,1.670110607,0.095906822,pos,ns,1.018150498,-0.000161278,0.000137281,-1.174799546,0.240976522,neg,ns,0.573608438,Pknox2,Pknox2_Intron,9,36950794,36950843,36950842,36950843,50,+,TCCAATCATGGGATCTGCTCGGATTAGACTGCAATCATTAATCTGAGCCG,"Intron (Pknox2-207/Pknox2, intron 3 of 10)",9,36890982,37083309,192328,2,Pknox2-207,132466,Pknox2-207;Pknox2-201;Pknox2-202;Pknox2-203;Pknox2-206;Pknox2-204;Pknox2-205;Pknox2-208;Pknox2-210;Pknox2-209;Pknox2-212,Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,47,208076,ENSMUSG00000035934,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17337,cg25364055,0.0000123,0.00000267,4.601011215,0.00000614,gain,ns,-0.0000128,0.00000454,-2.827783541,0.004992174,neg,ns,-0.001010716,0.001331258,-0.7592184,0.448298827,neg,ns,0.348432397,0.0000189,0.0000458,0.412238763,0.68044935,pos,ns,0.924882021,Agap1,Agap1_Exon,1,89766323,89766372,89766371,89766372,50,+,TCTGGGTCTCAGATGGCAAGCGGCATCAGCCTGGTCTCCTTCAACAGCCG,"Exon (Agap1-201/Agap1, exon 12 of 18)",1,89454806,89897617,442812,1,Agap1-201,311517,Agap1-201;Agap1-204;Agap1-202,Agap1;Agap1;Agap1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,29,347722,ENSMUSG00000055013,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14895,cg13913281,0.00000591,0.000015,0.395343032,0.692861654,gain,ns,0.0000719,0.0000254,2.827717815,0.004993173,pos,ns,-0.003731008,0.007446443,-0.501045707,0.616694536,neg,ns,0.209929899,0.000199599,0.000256083,0.779434065,0.436318689,pos,ns,0.775750554,Cacng2,Cacng2_fiveUTR,15,78118849,78118898,78118849,78118850,50,-,CGGTGGTTAAAAGCATTTGAACACCTCGATCAAACAGCCCCATAATTCTT,5' UTR,15,77991748,78120028,128281,2,Cacng2-201,1130,Cacng2-201,Cacng2,0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,6,12300,ENSMUSG00000019146,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
19828,cg19624396,-0.00000242,0.00000917,-0.263428366,0.792395441,loss,ns,0.000044,0.0000156,2.827675191,0.004993821,pos,ns,0.002370947,0.004563366,0.519560988,0.603740361,pos,ns,0.21914979,-0.000157721,0.000156934,-1.005019354,0.315671354,neg,ns,0.796481938,Med12,Med12_Exon,X,101282780,101282829,101282828,101282829,50,+,GTTCATCTTCGACCTCATGGAATATTCACTCAGCATCAGTGGCCTCATCG,"Exon (Med12-204/Med12, exon 19 of 46)",20,101274030,101297465,23436,1,Med12-204,8750,Med12-204;Med12-203;Med12-201;Med12-202;Med12-209;Med12-207;Med12-208,Med12;Med12;Med12;Med12;Med12;Med12;Med12,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,15,15,59024,ENSMUSG00000079487,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25967,cg07683102,-0.0000109,0.00000327,-3.324378029,0.000992445,loss,ns,0.0000157,0.00000555,2.827257105,0.005000179,pos,ns,0.002068357,0.001626035,1.272024505,0.204317788,pos,ns,0.689693821,-0.0000891,0.0000559,-1.593201385,0.112134093,neg,ns,0.920651302,Gucy2f,Gucy2f_Intron,X,142183347,142183396,142183395,142183396,50,-,AATACTGAATTCAAACAACAGCATCTTAATTTAATAGATTGAGTGCTTCG,"Intron (Gucy2f-201/Gucy2f, intron 2 of 19)",20,142081160,142196931,115772,2,Gucy2f-201,13535,Gucy2f-201,Gucy2f,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,2,245650,ENSMUSG00000042282,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7296,cg20161627,0.000054,0.00000417,12.93708782,6.60E-31,gain,yes,-0.00002,0.00000709,-2.826439438,0.005012636,neg,ns,0.003559796,0.002076509,1.714317401,0.087469942,pos,ns,1.058141159,-0.0000455,0.0000714,-0.636598126,0.524856421,neg,ns,0.058439605,Gabra1,Gabra1_fiveUTR,11,42182432,42182481,42182432,42182433,50,-,CGTCCCAGGGCAAACCGGATGTGAAATAGGCGGTGACTTCATGCCAGAGA,Promoter (<=1kb),11,42177290,42182460,5171,2,Gabra1-204,0,Gabra1-205;Gabra1-201;Gabra1-207;Gabra1-208;Gabra1-203;Gabra1-202;Gabra1-204;Gabra1-206,Gabra1;Gabra1;Gabra1;Gabra1;Gabra1;Gabra1;Gabra1;Gabra1,-269;0;-2589;-328;-2476;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,3,14394,ENSMUSG00000010803,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11706,cg22031066,0.0000352,0.00000518,6.803424199,5.28E-11,gain,yes,-0.0000248,0.00000879,-2.826421503,0.005012909,neg,ns,-0.007811803,0.002575733,-3.03284678,0.002627284,neg,ns,2.580492971,0.000445271,0.0000886,5.026808851,0.000000845,pos,yes,0.86122256,Rai1,Rai1_Intron,11,60161239,60161288,60161287,60161288,50,-,CTTAGAACGTAAGGCATCAGAAATTCTGAAACCTTCATCTATTATTAACG,"Intron (Rai1-201/Rai1, intron 2 of 5)",11,60105013,60199195,94183,1,Rai1-201,56226,Rai1-201;Rai1-205;Rai1-204;Rai1-207;Rai1-202,Rai1;Rai1;Rai1;Rai1;Rai1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,6,19377,ENSMUSG00000062115,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13945,cg02126453,-0.00000147,0.00000884,-0.165941551,0.868311119,loss,ns,0.0000425,0.000015,2.826199396,0.005016298,pos,ns,0.001805489,0.004401502,0.410198452,0.68194372,pos,ns,0.166251466,0.000174471,0.000151367,1.152635505,0.249948057,pos,ns,0.89887266,Pnck,Pnck_Exon,X,73657427,73657476,73657427,73657428,50,-,CGGTCACTCACAGGATGTAGGAGATGACGCCCAGGGCCCACACATCTACG,"Exon (Pnck-203/Pnck, exon 7 of 12)",20,73655994,73659724,3731,2,Pnck-203,2248,Pnck-203;Pnck-201;Pnck-202;Pnck-204;Pnck-205,Pnck;Pnck;Pnck;Pnck;Pnck,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,93843,ENSMUSG00000002012,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7721,cg07276805,0.00000265,0.00000519,0.511130051,0.609623828,gain,ns,0.0000249,0.00000882,2.826045057,0.005018654,pos,ns,0.011483553,0.002584248,4.443673731,0.0000123,pos,ns,4.909184316,-0.000360992,0.0000889,-4.061928943,0.0000617,neg,ns,0.869538971,Arhgap15,Arhgap15_Intron,2,43978785,43978834,43978833,43978834,50,+,ACTACAATTACAGGTGATATACAGATTGAAATCACAGGGCTGGTTTGTCG,"Intron (Arhgap15-203/Arhgap15, intron 6 of 14)",2,43748824,44395953,647130,1,Arhgap15-203,229961,Arhgap15-203;Arhgap15-202;Arhgap15-201,Arhgap15;Arhgap15;Arhgap15,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,72,78,76117,ENSMUSG00000049744,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17908,cg16553929,-0.0000135,0.00000505,-2.675532386,0.007857407,loss,ns,0.0000242,0.00000858,2.825878539,0.005021197,pos,ns,0.002382949,0.002513392,0.948100769,0.343816645,pos,ns,0.463673102,-0.0000214,0.0000864,-0.247216745,0.804904133,neg,ns,0.10140914,Nup54,Nup54_Exon,5,92434253,92434302,92434253,92434254,50,+,CGGAGTCGCCGAGGTAGTAGAAACACCGAAATTCCCAATATTAAAGTTCA,Promoter (<=1kb),5,92415540,92435219,19680,2,Nup54-201,917,Nup54-201;Nup54-206;Nup54-202;Nup54-207;Nup54-205;Nup54-204,Nup54;Nup54;Nup54;Nup54;Nup54;Nup54,0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,269113,ENSMUSG00000034826,conserved gene and region,5,92434164,92434352,189,*,189,11,0.492063492,1.024137931,0.058201058,0.00000271,CpGisland,TRUE,NA,NRS
7093,cg14458992,-0.0000497,0.0000107,-4.636303703,0.00000523,loss,ns,0.0000514,0.0000182,2.824679399,0.005039544,pos,ns,-0.001372638,0.005335646,-0.257258151,0.797150168,neg,ns,0.098459858,-0.0000814,0.000183492,-0.443459265,0.657742913,neg,ns,0.488513873,Zfpm2,Zfpm2_Intron,15,40913505,40913554,40913505,40913506,50,+,CGAAATTCTCTGATTTATGACAGGGCTGCAGCCAAGATCTATCTCCAAAG,"Intron (Zfpm2-201/Zfpm2, intron 4 of 7)",15,40655035,41104592,449558,1,Zfpm2-201,258470,Zfpm2-201;Zfpm2-203,Zfpm2;Zfpm2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,41,22762,ENSMUSG00000022306,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26408,cg26062663,-0.0000114,0.00000884,-1.28521768,0.199675588,loss,ns,0.0000424,0.000015,2.824638381,0.005040172,pos,ns,0.013749525,0.004398707,3.125810916,0.001941103,pos,ns,2.711951447,-0.000317992,0.000151271,-2.102135043,0.03634787,neg,ns,0.108241871,Gsx1,Gsx1_Intergenic_downstream,5,147223954,147224003,147223954,147223955,50,+,CGATGTGGGTTAAATGGACAATGACGCTGGTTAAGTTGGAGGGTCCTTTG,Distal Intergenic,5,147188696,147190947,2252,1,Gsx1-201,35258,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,12,20,14842,ENSMUSG00000053129,mapped to different genes,5,147223948,147224060,113,*,113,9,0.566371681,1.029352227,0.079646018,0.00000256,CpGisland,TRUE,U13,Hc-P
3852,cg20638433,-0.0000366,0.0000231,-1.583657134,0.114291369,loss,ns,-0.000110981,0.0000393,-2.824488301,0.005042473,neg,ns,-0.046192564,0.011511362,-4.012780171,0.0000753,neg,ns,4.123242822,0.00096474,0.000395875,2.436983383,0.015372638,pos,ns,0.920136531,5730522E02Rik,5730522E02Rik_Intergenic_downstream,11,25601950,25601999,25601998,25601999,50,-,ATGGACCATATCCCAATTTTCAAAAGGCATAAAGTATCCTCATTAATACG,Distal Intergenic,11,25602816,25620098,17283,2,5730522E02Rik-205,18148,5730522E02Rik-207;5730522E02Rik-205,5730522E02Rik;5730522E02Rik,0;18099,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,21,90,70626,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12728,cg14961949,0.0000292,0.00000322,9.077950871,1.32E-17,gain,yes,-0.0000155,0.00000547,-2.823700307,0.005054569,neg,ns,-0.005039612,0.001603428,-3.143023348,0.001833844,neg,ns,2.736637508,0.000196921,0.0000551,3.571183793,0.00041179,pos,ns,0.086145024,Rsrc1,Rsrc1_Promoter,3,66981896,66981945,66981944,66981945,50,+,TGTTAAGATCTTTGACAATTCTTCCTGCGGAGAGTTCAGATCTGATAGCG,Promoter (<=1kb),3,66981390,67356559,375170,1,Rsrc1-206,506,Rsrc1-206;Rsrc1-207;Rsrc1-203;Rsrc1-208;Rsrc1-202;Rsrc1-201;Rsrc1-209;Rsrc1-205;Rsrc1-204;Shox2-203;Shox2-201;Shox2-202;Shox2-204;Shox2-205,Rsrc1;Rsrc1;Rsrc1;Rsrc1;Rsrc1;Rsrc1;Rsrc1;Rsrc1;Rsrc1;Shox2;Shox2;Shox2;Shox2;Shox2,0;-3725;0;0;0;0;0;0;-4033;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,3,37,66880,ENSMUSG00000034544,conserved gene but different region,3,66981837,66982094,258,*,258,14,0.554263566,0.714398734,0.054263566,0.00000017,CpGisland,TRUE,U3,Pr-B
13281,cg24760597,-0.00000023,0.000008,-0.028689597,0.977130614,loss,ns,0.0000384,0.0000136,2.823586119,0.005056324,pos,ns,0.00749038,0.003982528,1.880810412,0.060934926,pos,ns,1.215133712,-0.000100161,0.000136959,-0.731324516,0.46513339,neg,ns,0.539809981,Ank3,Ank3_threeUTR,10,69993685,69993734,69993685,69993686,50,-,CGAAGTCTGCTAGAGATAAGAAAACAGAGGCAGCACCTTTAAAATCAAAG,3' UTR,10,69398996,70023957,624962,1,Ank3-247,594689,Ank3-247;Ank3-231;Ank3-210;Ank3-239;Ank3-240;Ank3-220;Ank3-201;Ank3-202;Ank3-203;Ank3-204;Ank3-206;Ank3-233;Ank3-221;Ank3-232;Ank3-228;Ank3-205;Ank3-215;Ank3-237;Ank3-242;Ank3-208;Ank3-227;Ank3-207;Ank3-230;Ank3-219;Ank3-244;Ank3-213;Ank3-224;Ank3-236;Ank3-225;Ank3-243;Ank3-235,Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,13,11735,ENSMUSG00000069601,conserved gene and region,10,69993548,69993920,373,*,373,19,0.504021448,0.80433549,0.050938338,1.69E-09,CpGisland,TRUE,NA,NRS
2927,cg27010468,0.0000317,0.00000621,5.102914108,0.000000584,gain,yes,-0.0000298,0.0000105,-2.821781283,0.005084137,neg,ns,-0.003450854,0.003089499,-1.116962465,0.264875325,neg,ns,0.576958498,0.000137583,0.000106248,1.294927805,0.196308734,pos,ns,0.524636435,Gm11880,Gm11880_Intergenic_downstream,4,22067351,22067400,22067351,22067352,50,+,CGTCTCAGGAGGAGGAGCAGGTGCAGGCTTCAAGCAAGGCCTTCAGGCCC,Distal Intergenic,4,22117134,22117532,399,2,Gm11880-201,50132,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,11,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7607,cg12188188,-0.00000205,0.00000296,-0.692256989,0.48929415,loss,ns,0.0000142,0.00000502,2.821555578,0.005087625,pos,ns,0.003552674,0.00147206,2.413403646,0.016383972,pos,ns,1.785580815,-0.0000941,0.0000506,-1.858571776,0.064035498,neg,ns,0.932935984,Ranbp9,Ranbp9_Exon,13,43413989,43414038,43413989,43413990,50,-,CGGTGTCACAATCTTCCATTTCGTGGTCATGTTTAGAGCTACCATTTAGG,"Exon (Ranbp9-201/Ranbp9, exon 11 of 14)",13,43402675,43481282,78608,2,Ranbp9-201,67244,Gm47597-201;Ranbp9-201;Ranbp9-205;Ranbp9-208,Gm47597;Ranbp9;Ranbp9;Ranbp9,-3496;0;-1505;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,56705,ENSMUSG00000038546,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25830,cg01115712,0.0000443,0.0000126,3.521608174,0.000493373,gain,ns,0.0000603,0.0000214,2.821542177,0.005087832,pos,ns,0.024355715,0.006263873,3.888283518,0.000123535,pos,ns,3.908210763,-0.000244446,0.000215414,-1.134772907,0.257347142,neg,ns,0.18991154,Uncx,Uncx_Intergenic_downstream,5,139585591,139585640,139585639,139585640,50,+,CTAACGAAATTGAAGTGCTTTGTGCTGCCAGTGGAAAGCCGGGTGACCCG,Distal Intergenic,5,139543898,139545268,1371,1,Uncx-202,41693,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,59,88,22255,ENSMUSG00000029546,conserved gene and region,5,139585354,139585726,373,*,373,27,0.616621984,0.761512287,0.072386059,4.94E-17,CpGisland,TRUE,U13,Hc-P
8826,cg25709820,-0.00000934,0.00000408,-2.29070044,0.022651704,loss,ns,0.0000195,0.00000692,2.821125884,0.005094271,pos,ns,0.004798635,0.002028576,2.365518731,0.018620052,pos,ns,1.730019108,-0.000216505,0.0000698,-3.103449744,0.002089091,neg,ns,0.911619237,Gm13466,Gm13466_Intergenic_downstream,2,45922451,45922500,45922451,45922452,50,+,CGTTAAGTACCAGATATTATATTCTGTAATATGCTTAAGTGATATTAGAG,Distal Intergenic,2,45809472,45810470,999,1,Gm13466-201,112979,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,9,666604,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4367,cg21767478,0.0000371,0.0000052,7.13500572,6.88E-12,gain,yes,-0.0000249,0.00000883,-2.820547508,0.00510323,neg,ns,-0.003181361,0.00258662,-1.229929531,0.219656068,neg,ns,0.658256795,0.000108436,0.000089,1.219013499,0.223765836,pos,ns,0.845168804,Pak4,Pak4_Exon,7,28564363,28564412,28564411,28564412,50,+,GGGTCCACCACCAGCTGCAGGGCAGCCCGGAACTGCTCATGGGATACTCG,"Exon (Pak4-202/Pak4, exon 5 of 10)",7,28558819,28598185,39367,2,Pak4-202,33773,Pak4-202;Pak4-201;Pak4-203;Pak4-204;Samd4b-201,Pak4;Pak4;Pak4;Pak4;Samd4b,0;0;33743;33674;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,70584,ENSMUSG00000030602,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14768,cg22166055,0.0000206,0.00000832,2.472425936,0.013956314,gain,ns,-0.0000399,0.0000141,-2.820400009,0.005105517,neg,ns,-0.008635417,0.00413999,-2.085854645,0.037809177,neg,ns,1.42240277,0.000110316,0.000142374,0.77483326,0.439028789,pos,ns,0.757369039,Gm11146,Gm11146_Intron,16,77593953,77594002,77594001,77594002,50,+,AGCTTGCCAGGTAGACGTTTCCATGACTCCCAGCCCCCAAAGGTGATGCG,"Intron (Mir99ahg-207/Mir99ahg-207, intron 7 of 7)",16,77588578,77602094,13517,2,Gm11146-201,8092,Gm11146-201,Gm11146,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,21,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20681,cg02633867,0.0000244,0.0000169,1.450409845,0.147955295,gain,ns,0.0000807,0.0000286,2.819025781,0.005126868,pos,ns,-0.004639548,0.008388354,-0.553093999,0.58059768,neg,ns,0.236124704,0.000503564,0.000288475,1.745609975,0.081869477,pos,ns,0.620721511,Pou4f1,Pou4f1_Intron,14,104453341,104453390,104453389,104453390,50,-,CAAATAAGTAGCCCGGCTGATGCAAAACCCCCAGTGATTGAATTTTGACG,"Intron (D130079A08Rik-202/D130079A08Rik-202, intron 1 of 4)",14,104463973,104465365,1393,2,Pou4f1-202,12024,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,31,18996,ENSMUSG00000048349,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25756,cg04535387,-0.0000114,0.00000303,-3.767511815,0.000197314,loss,ns,-0.0000145,0.00000515,-2.818959422,0.005127901,neg,ns,0.001460367,0.001509474,0.96746768,0.334064458,pos,ns,0.476169728,-0.0000662,0.0000519,-1.276106733,0.202873047,neg,ns,0.934768225,Ubr4,Ubr4_Exon,4,139440770,139440819,139440770,139440771,50,-,CGAGACCATGGTTGAACTAGCCATTGCCCTGAGCCTGCAGCAGGACCAAC,"Exon (Ubr4-212/Ubr4, exon 58 of 106)",4,139352609,139469763,117155,1,Ubr4-210,88161,Ubr4-210;Ubr4-212;Ubr4-201;Ubr4-203;Ubr4-202,Ubr4;Ubr4;Ubr4;Ubr4;Ubr4,0;0;0;0;5760,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,10,69116,ENSMUSG00000066036,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16346,cg06766626,0.0000345,0.00000993,3.475800246,0.000582002,gain,ns,0.0000476,0.0000169,2.81888474,0.005129064,pos,ns,0.00597551,0.004944477,1.208522235,0.22776748,pos,ns,0.642508283,0.000148517,0.00017004,0.873424658,0.383107726,pos,ns,0.604468076,Mrm1,Mrm1_Intergenic_downstream,11,84760989,84761038,84761037,84761038,50,-,GCAACGGGCCGCTCATTTCAGAAGTGTCATGCCACATTATCATCCTGCCG,Distal Intergenic,11,84814743,84815390,648,2,Mrm1-203,54401,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,37,42,217038,ENSMUSG00000018405,conserved gene and region,11,84760897,84761083,187,*,187,12,0.524064171,0.994240142,0.064171123,0.000000285,CpGisland,TRUE,U11,Tr-P
7311,cg26441853,-0.0000146,0.00000912,-1.602221948,0.110124968,loss,ns,0.0000437,0.0000155,2.818533156,0.005134542,pos,ns,0.00509784,0.004539354,1.123032019,0.262292878,pos,ns,0.581213501,-0.000048,0.000156108,-0.307764575,0.758468152,neg,ns,0.872322847,Gm8176,Gm8176_Intergenic_upstream,1,42259353,42259402,42259401,42259402,50,-,CCCTGTCTCTGTCATATTTGTCTACTTGAATGGTCCTAAATACCACAGCG,Distal Intergenic,1,42179290,42180388,1099,2,Gm8176-201,-79014,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,13,17,666582,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27309,cg07693879,-7.04E-08,0.00000811,-0.008678975,0.993080849,loss,ns,0.0000388,0.0000138,2.817961585,0.005143458,pos,ns,-0.003728667,0.004038193,-0.923350549,0.356542671,neg,ns,0.447888487,0.000115808,0.000138873,0.833909027,0.404974346,pos,ns,0.818815943,Grpr,Grpr_Intergenic_upstream,X,163637958,163638007,163638006,163638007,50,+,AGAAGCTCATCTATGCTTTGGGTTGGCCCCACTAGGACTGTACTCATACG,Distal Intergenic,20,163513904,163549677,35774,2,Grpr-201,-88281,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,2,14829,ENSMUSG00000031364,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20989,cg11642696,-0.0000192,0.00000607,-3.156012124,0.001756558,loss,ns,0.0000291,0.0000103,2.817931707,0.005143925,pos,ns,0.009603872,0.003020794,3.17925407,0.001625726,pos,ns,2.788952712,-0.000420973,0.000103885,-4.052303089,0.0000642,neg,ns,0.836416618,Immp1l,Immp1l_Intron,2,105917738,105917787,105917738,105917739,50,+,CGGCTGCATATGGATAGTCCCCTGATATCATTCACTTGCTGTGTAATCTT,"Intron (Immp1l-201/Immp1l, intron 2 of 6)",2,105904638,105965558,60921,1,Immp1l-201,13100,Immp1l-201,Immp1l,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,7,66541,ENSMUSG00000042670,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24553,cg01222249,-0.00000649,0.00000521,-1.246032294,0.213693372,loss,ns,-0.0000249,0.00000885,-2.817756973,0.005146654,neg,ns,0.009168084,0.002591885,3.537225949,0.000466166,pos,ns,3.331458947,-0.000183703,0.0000891,-2.060964517,0.040140243,neg,ns,0.884738569,Zmym4,Zmym4_Exon,4,126925859,126925908,126925859,126925860,50,-,CGACTGGAATTCCTGCAAGATCCCCAGAGTTCAAAAAATAATCATCTTCA,"Exon (Zmym4-201/Zmym4, exon 3 of 30)",4,126861939,126968135,106197,2,Zmym4-201,42227,Zmym4-204;Zmym4-201;Zmym4-206;Zmym4-203;Zmym4-209;Zmym4-202,Zmym4;Zmym4;Zmym4;Zmym4;Zmym4;Zmym4,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,8,67785,ENSMUSG00000042446,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1322,cg27410528,0.0000339,0.00000504,6.730116343,8.20E-11,gain,yes,-0.0000241,0.00000857,-2.817303673,0.005153739,neg,ns,0.003632352,0.002510168,1.44705522,0.148891887,pos,ns,0.827128966,-0.0000567,0.0000863,-0.656719085,0.511848772,neg,ns,0.070643372,Fezf2,Fezf2_fiveUTR,14,12345700,12345749,12345748,12345749,50,-,AGCTGACATCACATGAAGTCACTTGAAGTGGAATGACATGGGCGGCGGCG,Promoter (<=1kb),14,12342094,12345844,3751,2,Fezf2-203,95,Fezf2-203;Fezf2-201;Fezf2-202,Fezf2;Fezf2;Fezf2,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,13,45,54713,ENSMUSG00000021743,conserved gene and region,14,12345742,12345947,206,*,206,23,0.679611651,1.001479603,0.111650485,5.22E-19,CpGisland,TRUE,U13,Hc-P
5181,cg25602724,-0.00000854,0.00000442,-1.930435552,0.054464794,loss,ns,0.0000212,0.00000752,2.817116144,0.005156673,pos,ns,0.001572501,0.002202363,0.714006103,0.475760646,pos,ns,0.322611485,0.0000814,0.0000757,1.075005611,0.283208196,pos,ns,0.935638227,Prrxl1,Prrxl1_Intron,14,32605498,32605547,32605546,32605547,50,-,ATCGGTCATTCATAATTAACTAGTGATAATGTTCTACACTAATTTGTCCG,"Intron (Prrxl1-203/Prrxl1, intron 4 of 7)",14,32599407,32649204,49798,1,Prrxl1-203,6091,Prrxl1-203;Prrxl1-204;Prrxl1-202;Prrxl1-201;Prrxl1-205,Prrxl1;Prrxl1;Prrxl1;Prrxl1;Prrxl1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,23,107751,ENSMUSG00000041730,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
662,cg03914308,0.0000305,0.00000826,3.692599968,0.000262239,gain,ns,0.0000395,0.000014,2.816874779,0.005160451,pos,ns,0.014610331,0.004112713,3.552479679,0.000440957,pos,ns,3.355603984,-0.000211822,0.000141436,-1.497652634,0.13524103,neg,ns,0.675555269,Ppp1r3f,Ppp1r3f_Exon,X,7573347,7573396,7573395,7573396,50,+,TGCTGGGGCAGCCCTTCGGCATCAGTGGGTGTGGGAGCGGGTGCGATCCG,Promoter (<=1kb),20,7557296,7574283,16988,2,Ppp1r3f-205,887,Foxp3-209;Ppp1r3f-205;Ppp1r3f-201;Ppp1r3f-203,Foxp3;Ppp1r3f;Ppp1r3f;Ppp1r3f,-248;0;0;-504,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,8,54646,ENSMUSG00000039556,conserved gene but different region,X,7573363,7573550,188,*,188,18,0.659574468,0.895238095,0.095744681,1.08E-13,CpGisland,TRUE,U6,En-Sp
20296,cg04192455,0.000122049,0.00000828,14.74439675,1.19E-37,gain,yes,-0.0000396,0.0000141,-2.816752585,0.005162365,neg,ns,0.010940122,0.004119879,2.655447581,0.008329686,pos,ns,2.079371382,-0.000141043,0.000141682,-0.995484676,0.320276987,neg,ns,0.252953918,Hoxc5,Hoxc5_Exon,15,102991100,102991149,102991100,102991101,50,-,CGTGGTGCAATATCCCGACTGTAAATCCTCCGCCAACACTAACAGTAGCG,"Exon (Hoxc8-201/Hoxc8, exon 1 of 2)",15,102967443,103015676,48234,1,Hoxc5-202,23657,Hoxc5-202;Hoxc8-201;Hoxc8-202,Hoxc5;Hoxc8;Hoxc8,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,72,134,15424,ENSMUSG00000022485,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
6073,cg18077247,0.0000376,0.00000811,4.631657104,0.00000535,gain,ns,0.0000388,0.0000138,2.816044003,0.005173475,pos,ns,0.010801805,0.004037159,2.675595871,0.007855954,pos,ns,2.104801095,-0.000201299,0.000138838,-1.449887683,0.148100782,neg,ns,0.144633832,Psd2,Psd2_Intergenic_upstream,18,35933710,35933759,35933710,35933711,50,+,CGGGCCCTTTGGGGGAATACTAATTCCACTACAAGATAAATCATAATTTG,Distal Intergenic,18,35964830,36014712,49883,1,Psd2-201,-31071,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,24,29,74002,ENSMUSG00000024347,mapped to different genes,18,35933670,35933711,42,*,42,10,0.761904762,1.647058824,0.238095238,3.06E-12,CpGisland,TRUE,U13,Hc-P
19386,cg15369693,-0.0000113,0.00000158,-7.149273004,6.29E-12,loss,yes,0.00000754,0.00000268,2.815816714,0.005177044,pos,ns,0.000575304,0.000784802,0.733056401,0.46407798,pos,ns,0.333409038,-0.0000144,0.000027,-0.531903673,0.595173684,neg,ns,0.962399437,Foxp1,Foxp1_Intron,6,99190001,99190050,99190049,99190050,50,+,CGTTAAATACAGTCAGTGTCAGGAAGATGCGTCCCACTCATAAAGCAGCG,"Intron (Foxp1-206/Foxp1, intron 2 of 17)",6,98925338,99266515,341178,2,Foxp1-206,76465,Foxp1-206;Foxp1-204;Foxp1-220;Foxp1-221;Foxp1-222;Foxp1-223;Foxp1-202;Foxp1-211;Foxp1-212;Foxp1-224,Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,87,108655,ENSMUSG00000030067,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7157,cg01494053,0.0000872,0.0000227,3.83225205,0.000153739,gain,ns,0.000108815,0.0000386,2.815693566,0.005178978,pos,ns,0.015270069,0.011321972,1.348711124,0.178414198,pos,ns,0.748570587,0.00000774,0.000389362,0.019888129,0.98414541,pos,ns,0.810067534,Fam219a,Fam219a_Exon,4,41524331,41524380,41524331,41524332,50,+,CGGGGATGGTTTGTAATTCATGGCTACTGACTCACCCTCCCGGGCGTCAC,"Exon (Fam219a-201/Fam219a, exon 2 of 6)",4,41517691,41569509,51819,2,Fam219a-201,45129,Fam219a-201;Fam219a-202;Fam219a-203;Fam219a-204;Fam219a-205,Fam219a;Fam219a;Fam219a;Fam219a;Fam219a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,7,71901,ENSMUSG00000028439,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15267,cg20449752,-0.00000609,0.00000585,-1.041859126,0.298288826,loss,ns,0.000028,0.00000994,2.815388445,0.005183774,pos,ns,0.007330436,0.002910946,2.518231634,0.012297948,pos,ns,1.910167363,-0.000187728,0.000100107,-1.875269199,0.061695564,neg,ns,0.914272396,Olfm4,Olfm4_Intergenic_downstream,14,80063033,80063082,80063033,80063034,50,+,CGGCAAGGACTCATTTGCCCATAACGAACACTGAGTACAAAAGCAAATTA,Distal Intergenic,14,80000302,80021930,21629,1,Olfm4-201,62731,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,380924,ENSMUSG00000022026,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14504,cg08924415,-0.00000829,0.00000551,-1.502631602,0.133952037,loss,ns,0.0000264,0.00000937,2.815113342,0.005188101,pos,ns,0.004316702,0.002744362,1.572934239,0.116754067,pos,ns,0.932727982,-0.0000731,0.0000944,-0.774477543,0.439238728,neg,ns,0.912053052,Puf60,Puf60_Exon,15,76074607,76074656,76074607,76074608,50,-,CGATTGCAAAGGTGAGAGAGGATCTCCAAAGCCCATTGTCACTGCTGCCA,"Exon (Puf60-202/Puf60, exon 5 of 12)",15,76070182,76080913,10732,2,Puf60-202,6257,Puf60-202;Puf60-204;Puf60-201;Puf60-203;Puf60-207;Puf60-210;Puf60-211;Puf60-208;Puf60-206;Puf60-209;Scrib-201;Scrib-202;Scrib-203,Puf60;Puf60;Puf60;Puf60;Puf60;Puf60;Puf60;Puf60;Puf60;Puf60;Scrib;Scrib;Scrib,0;0;0;-3210;0;0;0;0;3046;2297;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,6,67959,ENSMUSG00000002524,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15139,cg25162386,0.000100168,0.0000343,2.917714122,0.003783806,gain,ns,0.000164139,0.0000583,2.814269098,0.005201401,pos,ns,0.034479505,0.017086958,2.017884368,0.044464511,pos,ns,1.351986482,-0.000137642,0.000587619,-0.234237238,0.814955431,neg,ns,0.495193945,Maff,Maff_Exon,15,79357621,79357670,79357669,79357670,50,+,GCAGAAGCAGAAGTCGGAGCTGGAGCGCGAGGTGGACAAGCTGGCGCGCG,"Exon (Maff-203/Maff, exon 3 of 3)",15,79346621,79359072,12452,1,Maff-203,11000,Maff-203;Maff-201;Maff-202;Maff-204;Tmem184b-201;Tmem184b-202;Tmem184b-204,Maff;Maff;Maff;Maff;Tmem184b;Tmem184b;Tmem184b,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,5,17133,ENSMUSG00000042622,conserved gene but different region,15,79357314,79357884,571,*,571,71,0.712784588,0.979251208,0.124343257,1.75E-61,CpGisland,TRUE,U4,Pr-F
27663,cg02851990,-0.00000879,0.00000586,-1.499547949,0.134749226,loss,ns,-0.000028,0.00000996,-2.81349868,0.005213565,neg,ns,-0.007981628,0.002917277,-2.735985627,0.006577843,neg,ns,2.18191652,0.000220791,0.000100325,2.200762386,0.028489921,pos,ns,0.876088665,Sdccag8,Sdccag8_Intron,1,176946289,176946338,176946337,176946338,50,-,CGCCTTACTGTGAAATGACATCAGGAACACCTGTAACCTTTGGCTGGCCG,"Intron (Sdccag8-204/Sdccag8, intron 15 of 16)",1,176814660,176956360,141701,1,Sdccag8-204,131629,Sdccag8-204;Sdccag8-201;Sdccag8-203,Sdccag8;Sdccag8;Sdccag8,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,20,76816,ENSMUSG00000026504,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5453,cg18440245,-0.00000682,0.0000111,-0.613517832,0.539983893,loss,ns,0.0000531,0.0000189,2.813062783,0.005220458,pos,ns,0.019868581,0.005530074,3.592823366,0.000380306,pos,ns,3.41986645,-0.00088051,0.000190179,-4.629907817,0.00000539,neg,ns,0.385895736,Mvb12b,Mvb12b_Intergenic_upstream,2,33989872,33989921,33989920,33989921,50,-,GATTTGTGGATAAGCCTGAAGCAAAGTCAATGCTCGGTGTCAATCCCACG,Distal Intergenic,2,33729953,33887946,157994,2,Mvb12b-201,-101975,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,16,47,72543,ENSMUSG00000038740,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12408,cg13638959,0.000106241,0.0000156,6.828853543,4.52E-11,gain,yes,-0.0000743,0.0000264,-2.812997605,0.00522149,neg,ns,0.042114632,0.007743211,5.438910399,0.000000109,pos,ns,6.962974353,-0.001651952,0.000266288,-6.203620757,1.76E-09,neg,yes,0.246474981,Fign,Fign_Promoter,2,64099072,64099121,64099120,64099121,50,-,ACACGTTTTCTGGGGTCTCTTGTTAGATGTAAATGTGCGGCATCCAGACG,Promoter (1-2kb),2,63977337,64098038,120702,2,Fign-201,-1083,Fign-203;Fign-201;Fign-202;Fign-204,Fign;Fign;Fign;Fign,0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,12,84,60344,ENSMUSG00000075324,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19233,cg08992759,0.0000529,0.00000448,11.81926198,7.34E-27,gain,yes,-0.0000214,0.00000761,-2.812993152,0.00522156,neg,ns,-0.001409386,0.002228483,-0.632442122,0.527564203,neg,ns,0.277724681,0.0000212,0.0000766,0.276156368,0.782611979,pos,ns,0.106223404,Ddn,Ddn_Exon,15,98807189,98807238,98807189,98807190,50,+,CGCGGCCCACACCTGGGACAATGAGCAGGAACCCAGGTGAGCAGTTTGTG,Promoter (<=1kb),15,98803777,98807925,4149,2,Ddn-201,687,Ddn-201;Ddn-202,Ddn;Ddn,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,13199,ENSMUSG00000059213,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
23970,cg20280919,0.0000041,0.00000625,0.656046378,0.512280911,gain,ns,-0.0000298,0.0000106,-2.812729414,0.005225736,neg,ns,-0.007195453,0.003108407,-2.314836479,0.021274879,neg,ns,1.672132893,-0.000168136,0.000106898,-1.572863025,0.116770561,neg,ns,0.793466039,Mapkapk5,Mapkapk5_Exon,5,121537167,121537216,121537215,121537216,50,-,CTGTGAAATAGCTCTCCCCCTTCCATCATCTCCATTACAATTAAGAGTCG,Promoter (<=1kb),5,121534407,121537184,2778,2,Mapkapk5-208,0,Adam1a-202;Gm42878-201;Mapkapk5-201;Mapkapk5-204;Mapkapk5-202;Mapkapk5-203;Mapkapk5-205;Mapkapk5-211;Mapkapk5-209;Mapkapk5-213;Mapkapk5-208,Adam1a;Gm42878;Mapkapk5;Mapkapk5;Mapkapk5;Mapkapk5;Mapkapk5;Mapkapk5;Mapkapk5;Mapkapk5;Mapkapk5,0;0;0;0;0;0;0;0;-1316;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,17165,ENSMUSG00000029454,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2619,cg20097241,-0.0000338,0.00000747,-4.523868515,0.00000866,loss,ns,-0.0000357,0.0000127,-2.812674249,0.00522661,neg,ns,0.002818526,0.003719942,0.757680177,0.449218026,pos,ns,0.347542825,-0.000298153,0.000127928,-2.330619293,0.020414676,neg,ns,0.780194362,Zswim8,Zswim8_Exon,14,20722853,20722902,20722901,20722902,50,+,TGTGGGGGCAGCCAAGGGGGTGCTGAGCCCGTTTGTGCTGCAGGAGATCG,"Exon (Zswim8-201/Zswim8, exon 25 of 26)",14,20707552,20723619,16068,1,Zswim8-201,15301,Ndst2-202;Ndst2-205;Ndst2-201;Ndst2-204;Ndst2-207;Zswim8-201;Zswim8-208;Zswim8-204;Zswim8-203;Zswim8-209;Zswim8-207;Zswim8-202;Zswim8-210;Zswim8-214,Ndst2;Ndst2;Ndst2;Ndst2;Ndst2;Zswim8;Zswim8;Zswim8;Zswim8;Zswim8;Zswim8;Zswim8;Zswim8;Zswim8,0;0;0;0;0;0;0;0;0;0;4252;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,13,14,268721,ENSMUSG00000021819,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22947,cg26980159,-0.0000207,0.00000723,-2.856043085,0.004579183,loss,ns,-0.0000346,0.0000123,-2.812381023,0.005231257,neg,ns,-0.010433873,0.003600424,-2.897956896,0.004023704,neg,ns,2.395373974,-0.00000413,0.000123818,-0.033344955,0.973420964,neg,ns,0.851393315,Mast2,Mast2_Exon,4,116322331,116322380,116322331,116322332,50,-,CGAGATTTATCCAGGCAGTCTCGGGCCATCTCAATCACCTGATGATGAAT,"Exon (Mast2-217/Mast2, exon 7 of 26)",4,116306762,116371732,64971,2,Mast2-217,49352,Mast2-217;Mast2-216;Mast2-202;Mast2-201;Mast2-203;Mast2-204;Mast2-215;Mast2-212;Mast2-207;Mast2-205,Mast2;Mast2;Mast2;Mast2;Mast2;Mast2;Mast2;Mast2;Mast2;Mast2,0;0;0;0;0;0;-4571;0;0;83606,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,17776,ENSMUSG00000003810,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5355,cg18936678,-0.0000581,0.00001,-5.797280791,1.66E-08,loss,yes,0.0000478,0.000017,2.8117517,0.005241243,pos,ns,-0.002605232,0.004985247,-0.522588326,0.60163403,neg,ns,0.220667607,-0.0000723,0.000171442,-0.421879422,0.673405442,neg,ns,0.237890114,Lmx1b,Lmx1b_Intron,2,33605630,33605679,33605630,33605631,50,+,CGGGGAGGAGGGGCCATAAAAGCTGGGTTCTGCACTCCGTAATTATCCCT,"Intron (Lmx1b-201/Lmx1b, intron 2 of 7)",2,33560965,33640608,79644,2,Lmx1b-201,34929,Lmx1b-201;Lmx1b-203;Lmx1b-204;Lmx1b-202,Lmx1b;Lmx1b;Lmx1b;Lmx1b,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,26,16917,ENSMUSG00000038765,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23581,cg27520705,-0.0000389,0.0000173,-2.251864473,0.025030554,loss,ns,-0.0000825,0.0000293,-2.811727272,0.005241631,neg,ns,0.015352689,0.008595193,1.78619476,0.075044973,pos,ns,1.124678397,-0.001249391,0.000295588,-4.22679918,0.0000312,neg,ns,0.623250747,Dpyd,Dpyd_Intron,3,119063779,119063828,119063827,119063828,50,-,GCACTAATTAATGCTAATTAAGGTTTCCTGTCTATCTAGTTGGAAAAACG,"Intron (Dpyd-201/Dpyd, intron 13 of 22)",3,118562129,119432924,870796,1,Dpyd-201,501650,Dpyd-201,Dpyd,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,14,29,99586,ENSMUSG00000033308,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26521,cg01759293,-0.000327282,0.0000193,-16.92239637,5.89E-46,loss,yes,-0.0000924,0.0000329,-2.811227746,0.00524957,neg,ns,0.031372798,0.009625788,3.259244559,0.00124123,pos,ns,2.906147684,-0.000983956,0.00033103,-2.972406045,0.003186243,neg,ns,0.381040374,Casz1,Casz1_Intron,4,148871821,148871870,148871821,148871822,50,+,CGACAAGGAAAAATATGGAGCTTAACTGGAACCATATGGCTCAGTACTTG,"Intron (Casz1-201/Casz1, intron 2 of 15)",4,148804429,148945129,140701,1,Casz1-201,67392,Casz1-201;Casz1-202,Casz1;Casz1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,94,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
712,cg23728569,-0.00000631,0.00000438,-1.440143551,0.150835916,loss,ns,0.0000209,0.00000744,2.811184349,0.00525026,pos,ns,0.005195391,0.002180142,2.383051967,0.017771943,pos,ns,1.750265078,-0.0000984,0.000075,-1.312919533,0.190181133,neg,ns,0.94261112,Nipbl,Nipbl_threeUTR,15,8290829,8290878,8290877,8290878,50,-,AAAAAACAATGCTTCCCTGGAAACTGGGCTAAGCTAAAGAAAGCCATCCG,3' UTR,15,8290617,8444463,153847,2,Nipbl-201,153585,Nipbl-201,Nipbl,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,36,71175,ENSMUSG00000022141,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4684,cg13509839,-0.0000592,0.00000752,-7.865286494,6.17E-14,loss,yes,0.0000359,0.0000128,2.810802594,0.005256336,pos,ns,-0.008715182,0.003744336,-2.327563921,0.020578782,neg,ns,1.686580335,0.000343543,0.000128767,2.667934282,0.00803316,pos,ns,0.797872959,Mecom,Mecom_Intron,3,30106649,30106698,30106649,30106650,50,+,CGCCAACCACAACATGCTACCCACCGTGAGAGAGCAGGACGCGGGCTGCT,"Intron (Mecom-212/Mecom, intron 1 of 15)",3,29951299,30509733,558435,2,Mecom-212,403035,Mecom-212;Mecom-203;Mecom-210;Mecom-213;Mecom-207;Mecom-208;Mecom-211,Mecom;Mecom;Mecom;Mecom;Mecom;Mecom;Mecom,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,80,14013,ENSMUSG00000027684,conserved gene and region,3,30106598,30106734,137,*,137,14,0.613138686,1.097254005,0.102189781,3.95E-11,CpGisland,TRUE,U9,En-Pp
14870,cg17025698,0.000026,0.00000446,5.816198315,0.000000015,gain,yes,-0.0000213,0.00000758,-2.810419565,0.005262438,neg,ns,-0.004503551,0.002222019,-2.026783524,0.043540222,neg,ns,1.361109366,0.0000394,0.0000764,0.515846608,0.606329255,pos,ns,0.836131681,Phf12,Phf12_threeUTR,11,78028841,78028890,78028889,78028890,50,-,AGAATACCAAACATTATGAGCTGTTAAACTACAGTGAGCATGGGACAACG,3' UTR,11,77982802,78030539,47738,1,Phf12-201,46039,Dhrs13-201;Dhrs13-204;Dhrs13-203;Dhrs13-202;Phf12-202;Phf12-201;Phf12-207;Phf12-206;Phf12-208;Phf12-205;Phf12-203;Phf12-204,Dhrs13;Dhrs13;Dhrs13;Dhrs13;Phf12;Phf12;Phf12;Phf12;Phf12;Phf12;Phf12;Phf12,-3390;-3459;-3462;-3469;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,11,27,268448,ENSMUSG00000037791,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16461,cg26989810,-0.0000239,0.0000117,-2.037658807,0.042432876,loss,ns,0.0000559,0.0000199,2.810333028,0.005263817,pos,ns,0.002470721,0.00582897,0.423869333,0.671955073,pos,ns,0.172659763,-0.00000561,0.000200458,-0.027988613,0.977689242,neg,ns,0.881241793,Cntln,Cntln_Intron,4,85050224,85050273,85050224,85050225,50,+,CGATTTGGTATTCAGAAAAAATACTGTCAGATCCTTTGAAATATCTTGGG,"Intron (Cntln-201/Cntln, intron 15 of 25)",4,84884309,85131921,247613,1,Cntln-201,165915,Cntln-201;Cntln-204,Cntln;Cntln,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,25,338349,ENSMUSG00000038070,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25288,cg01131483,0.0000515,0.0000212,2.428933195,0.015711525,gain,ns,0.000101268,0.000036,2.80976019,0.005272958,pos,ns,0.02242099,0.01055892,2.123417005,0.034510779,pos,ns,1.462045232,-0.000390382,0.00036312,-1.075074807,0.283177266,neg,ns,0.549365326,Gm6077,Gm6077_Intergenic_downstream,3,134331655,134331704,134331655,134331656,50,-,CGCTTCTCTTGGGATTAATTCGAGCTGTCTGTCTGCACCAGGCTACCAGC,Distal Intergenic,3,134365606,134366104,499,2,Gm6077-201,34449,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,606718,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8115,cg04686788,-0.00000305,0.00000573,-0.533151979,0.594310387,loss,ns,0.0000273,0.00000973,2.809738588,0.005273303,pos,ns,0.005167273,0.00285125,1.812283421,0.070909779,pos,ns,1.149293865,0.00000576,0.0000981,0.058787675,0.953159103,pos,ns,0.073727826,Pax2,Pax2_Promoter,19,44753588,44753637,44753636,44753637,50,-,ATTTATTGGGCAGATCAGATGCACAGAGGCGGCTAATGAAGCAAATCCCG,Promoter (2-3kb),19,44756045,44837851,81807,1,Pax2-203,-2457,Pax2-203;Pax2-201,Pax2;Pax2,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,5,166,18504,ENSMUSG00000004231,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
13357,cg19818696,0.000125476,0.00000644,19.49262712,8.46E-56,gain,yes,-0.0000307,0.0000109,-2.809695498,0.005273991,neg,ns,0.006502889,0.003203816,2.02973263,0.04323754,pos,ns,1.364139027,-0.0000723,0.000110179,-0.656506372,0.511985396,neg,ns,0.484044364,Nr2f2,Nr2f2_Intron,7,70329649,70329698,70329697,70329698,50,+,CACATTTTATGGGTCACAAACCATCAACAATTGCCACATTATTGTCCACG,"Intron (Gm29683-202/Gm29683-202, intron 1 of 3)",7,70353074,70355237,2164,2,Nr2f2-203,25539,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,69,11819,ENSMUSG00000030551,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
9833,cg22151044,-0.00000352,0.00000223,-1.578775762,0.115407318,loss,ns,0.0000106,0.00000379,2.809632675,0.005274994,pos,ns,0.001420117,0.001109623,1.279819899,0.201565427,pos,ns,0.695583957,-0.000046,0.0000382,-1.204811671,0.229194981,neg,ns,0.939998492,Tbc1d5,Tbc1d5_Exon,17,51023440,51023489,51023440,51023441,50,+,CGAAAGTTTCTATTCATTTTAAGTGTTGTTAGTTGGAAGAGTCATTAGTC,"Exon (Tbc1d5-209/Tbc1d5, exon 3 of 3)",17,50733124,51179168,446045,2,Tbc1d5-201,155679,Tbc1d5-201;Tbc1d5-207;Tbc1d5-205;Tbc1d5-208;Tbc1d5-203;Tbc1d5-202;Tbc1d5-206;Tbc1d5-209,Tbc1d5;Tbc1d5;Tbc1d5;Tbc1d5;Tbc1d5;Tbc1d5;Tbc1d5;Tbc1d5,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,14,72238,ENSMUSG00000023923,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3077,cg15576133,-0.00000248,0.00000636,-0.390075555,0.696748558,loss,ns,0.0000304,0.0000108,2.809571656,0.005275969,pos,ns,0.005978925,0.00316598,1.888490919,0.059893552,pos,ns,1.222619929,-0.000144621,0.000108878,-1.328286952,0.18506038,neg,ns,0.546129532,Gm11881,Gm11881_Intergenic_upstream,4,22564632,22564681,22564680,22564681,50,+,TTTTGGCACTGGTTTTGGGTGTTAAGTATCAACTAACATGTTTATGCCCG,Distal Intergenic,4,22528438,22529009,572,2,Gm11881-201,-35623,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8851,cg12867675,-0.00000211,0.00000148,-1.427522474,0.154435893,loss,ns,0.00000704,0.00000251,2.809453525,0.005277857,pos,ns,0.000703619,0.000734315,0.958197606,0.338709817,pos,ns,0.470172216,-0.0000322,0.0000253,-1.276567414,0.202710478,neg,ns,0.964176167,Ldb1,Ldb1_Exon,19,46033305,46033354,46033305,46033306,50,+,CGCCCATCAGGGTGGGCTCCCCCACCACCATCACATCCTGAGAGTGGCGG,"Exon (Ldb1-207/Ldb1, exon 11 of 11)",19,46031570,46045210,13641,2,Ldb1-207,11856,Ldb1-207;Ldb1-206;Ldb1-202;Ldb1-208;Ldb1-201;Ldb1-205;Ldb1-203;Ldb1-204,Ldb1;Ldb1;Ldb1;Ldb1;Ldb1;Ldb1;Ldb1;Ldb1,0;0;0;0;0;0;1524;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,9,16825,ENSMUSG00000025223,conserved gene and region,19,46033191,46033306,116,*,116,12,0.637931035,1.01978022,0.103448276,1.21E-09,CpGisland,TRUE,U10,Tr-S
7776,cg11579008,0.0000044,0.00000391,1.125369849,0.261302866,gain,ns,-0.0000186,0.00000664,-2.809049234,0.005284322,neg,ns,-0.004678707,0.001944,-2.406742969,0.016680088,neg,ns,1.77780167,0.0000801,0.0000669,1.198347621,0.231697042,pos,ns,0.901665771,Hinfp,Hinfp_Exon,9,44298872,44298921,44298872,44298873,50,-,CGATCCAATGAGGTCTGGCGACGGATGTGATCTAAGAACTTGGTATTGTT,"Exon (Hinfp-205/Hinfp, exon 5 of 10)",9,44292440,44305671,13232,2,Hinfp-205,6750,Hinfp-205;Hinfp-203;Hinfp-201;Hinfp-204;Hinfp-206;Hinfp-207;Hinfp-202;Hinfp-208,Hinfp;Hinfp;Hinfp;Hinfp;Hinfp;Hinfp;Hinfp;Hinfp,0;-832;0;-236;-2;0;6725;6724,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,102423,ENSMUSG00000032119,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12559,cg18511286,-0.00000679,0.00000259,-2.623989294,0.009120819,loss,ns,0.0000123,0.00000439,2.808562503,0.005292115,pos,ns,0.002773703,0.001287021,2.15513433,0.03192103,pos,ns,1.4959231,-0.0000811,0.0000443,-1.833441075,0.067695691,neg,ns,0.941154162,Pikfyve,Pikfyve_threeUTR,1,65224182,65224231,65224182,65224183,50,-,CGCACATCAGTCAGCAGTTTCCAGTCCACAGTGGACAGTGACTCAGCCGC,3' UTR,1,65186689,65246898,60210,1,Pikfyve-209,37493,Pikfyve-209;Pikfyve-207;Pikfyve-201;Pikfyve-205;Pikfyve-202,Pikfyve;Pikfyve;Pikfyve;Pikfyve;Pikfyve,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,4,18711,ENSMUSG00000025949,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
253,cg01512389,0.0000828,0.0000112,7.381763368,1.45E-12,gain,yes,-0.0000535,0.0000191,-2.807513246,0.00530895,neg,ns,0.006087352,0.005585032,1.0899403,0.276585949,pos,ns,0.558169887,-0.000218513,0.000192069,-1.137680624,0.256132405,neg,ns,0.26302933,Cdk14,Cdk14_Intron,5,4834956,4835005,4835004,4835005,50,+,GCTGCTCTGTTAAATCATGGGGTTCCATCAACATCTCAGAATTCCTGCCG,"Intron (Cdk14-203/Cdk14, intron 13 of 13)",5,4803391,5266068,462678,2,Cdk14-203,431063,Cdk14-203;Cdk14-201;Cdk14-202;Cdk14-204,Cdk14;Cdk14;Cdk14;Cdk14,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,16,18647,ENSMUSG00000028926,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25896,cg03957288,2.16E-09,0.00000221,0.000978243,0.999220104,gain,ns,0.0000106,0.00000376,2.807147479,0.00531483,pos,ns,0.001411193,0.001101174,1.28153488,0.200963573,pos,ns,0.696882657,-0.0000337,0.0000379,-0.89091043,0.37366815,neg,ns,0.962031037,Chst12,Chst12_Exon,5,140524123,140524172,140524123,140524124,50,+,CGGGGCCATCTACTGCTACGTGCCCAAGGTGGCCTGCACCAACTGGAAGC,"Exon (Chst12-201/Chst12, exon 2 of 2)",5,140505550,140525724,20175,1,Chst12-201,18573,Chst12-201;Chst12-202,Chst12;Chst12,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,59031,ENSMUSG00000036599,conserved gene and region,5,140523793,140524317,525,*,525,32,0.598095238,0.690647482,0.060952381,8.62E-18,CpGisland,TRUE,NA,NRS
8110,cg14978835,-0.00000403,0.00000213,-1.892160317,0.059401291,loss,ns,0.0000102,0.00000362,2.806201277,0.005330068,pos,ns,0.003073284,0.001059969,2.899410199,0.004005596,pos,ns,2.397332885,-0.0000765,0.0000365,-2.09761452,0.036748694,neg,ns,0.952260431,Jarid2,Jarid2_Intron,13,44751969,44752018,44752017,44752018,50,+,CATCAGCTGCATAAGTGATGAGGCCAAGTTGAGGAATCCATTCCAGTGCG,"Intron (Jarid2-212/Jarid2, intron 2 of 3)",13,44729535,44848340,118806,1,Jarid2-212,22434,Jarid2-212;Jarid2-204;Jarid2-210;Jarid2-201;Jarid2-209;Jarid2-203;Jarid2-208;Jarid2-213;Jarid2-215;Jarid2-216;Jarid2-206;Jarid2-205;Jarid2-202,Jarid2;Jarid2;Jarid2;Jarid2;Jarid2;Jarid2;Jarid2;Jarid2;Jarid2;Jarid2;Jarid2;Jarid2;Jarid2,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,21,16468,ENSMUSG00000038518,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4707,cg26893744,-0.00000198,0.00000223,-0.886592706,0.375985491,loss,ns,0.0000106,0.00000379,2.806192828,0.005330204,pos,ns,0.003307915,0.001110605,2.978480852,0.0031255,pos,ns,2.50508044,-0.000087,0.0000382,-2.277494829,0.023437456,neg,ns,0.949262414,Gm19640,Gm19640_Intergenic_upstream,9,30196875,30196924,30196875,30196876,50,-,CGGGCACTGTATGTAAAATCTGGCTTTATAAATAAACACTACTTTGCCCT,Distal Intergenic,9,30063256,30063719,464,2,Gm19640-201,-133205,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,4,100503335,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18490,cg23683070,-0.00000435,0.00000137,-3.170164634,0.00167578,loss,ns,-0.00000654,0.00000233,-2.805933589,0.005334386,neg,ns,0.000111986,0.000683322,0.16388454,0.869928834,pos,ns,0.060516274,-0.0000352,0.0000235,-1.498722359,0.134963282,neg,ns,0.952671432,Ube2z,Ube2z_Exon,11,96061057,96061106,96061057,96061058,50,-,CGAAACACGAACAGGAAGAAACCCCCTTCATAAGGAGTGTCAAATGGGCC,"Exon (Ube2z-201/Ube2z, exon 3 of 7)",11,96047432,96065388,17957,2,Ube2z-201,4282,Ube2z-201,Ube2z,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,6,268470,ENSMUSG00000014349,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17089,cg04903706,0.000066,0.00000777,8.484174581,9.06E-16,gain,yes,-0.000037,0.0000132,-2.805126642,0.005347423,neg,ns,-0.002171202,0.003868964,-0.56118443,0.57507724,neg,ns,0.24027382,0.000147848,0.000133053,1.111197011,0.267344639,pos,ns,0.864827127,Msi2,Msi2_Exon,11,88348957,88349006,88348957,88348958,50,-,CGCCAAAATTCGGTTGAGCACTGTAGCTATTCAGGACTGGTGTGCAGAGA,"Exon (Msi2-201/Msi2, exon 12 of 14)",11,88339382,88718229,378848,2,Msi2-203,369223,Msi2-203;Msi2-201,Msi2;Msi2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,36,76626,ENSMUSG00000069769,conserved gene and region,11,88348768,88348968,201,*,201,21,0.696517413,0.87012987,0.104477612,9.68E-17,CpGisland,TRUE,U11,Tr-P
20986,cg21818536,-0.00000197,0.00000351,-0.561166163,0.575089677,loss,ns,-0.0000167,0.00000595,-2.804788956,0.005352887,neg,ns,-0.00336934,0.001744554,-1.931347312,0.054351526,neg,ns,1.264788257,0.0000695,0.00006,1.158637255,0.247495844,pos,ns,0.933728312,Tanc2,Tanc2_Exon,11,105914013,105914062,105914061,105914062,50,-,AACTTTTTGTTTTCTCCTTTCTTTGAAGGTTGTCAGACGTTACCGAGTCG,"Exon (Tanc2-204/Tanc2, exon 8 of 12)",11,105589991,105929304,339314,1,Tanc2-202,324022,Tanc2-202;Tanc2-204;Tanc2-201;Tanc2-205,Tanc2;Tanc2;Tanc2;Tanc2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,15,20,77097,ENSMUSG00000053580,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17977,cg08377921,-5.72E-08,0.00000374,-0.015298907,0.987803555,loss,ns,0.0000178,0.00000635,2.804742574,0.005353638,pos,ns,0.001101496,0.001859687,0.592301829,0.554080251,pos,ns,0.256427329,-0.0000182,0.000064,-0.283841706,0.776721172,neg,ns,0.934437251,Kif1a,Kif1a_Exon,1,93082321,93082370,93082369,93082370,50,+,GTGCTTCCAGACATCTGAATGATGCACTTGGAGTCACGGCTCATTTCCCG,"Exon (Kif1a-204/Kif1a, exon 2 of 48)",1,93015464,93101822,86359,2,Kif1a-204,19452,Kif1a-204;Kif1a-202;Kif1a-210;Kif1a-203;Kif1a-201;Kif1a-208;Kif1a-206,Kif1a;Kif1a;Kif1a;Kif1a;Kif1a;Kif1a;Kif1a,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,16560,ENSMUSG00000014602,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23342,cg08510667,0.000117242,0.0000196,5.969120943,6.52E-09,gain,yes,-0.0000936,0.0000334,-2.803759474,0.005369576,neg,ns,0.010088822,0.009775699,1.032030673,0.302862221,pos,ns,0.518754898,0.0000816,0.000336185,0.242655459,0.808432782,pos,ns,0.068219698,Socs3,Socs3_Exon,11,117968155,117968204,117968203,117968204,50,+,TGAAGGTCTTGAGGCGCAGGCTGGTGTCCAGGGGGCGGCTCATCCCGGCG,Promoter (<=1kb),11,117966079,117969186,3108,2,Socs3-201,982,Socs3-201;Socs3-202;Socs3-203,Socs3;Socs3;Socs3,0;1843;1247,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,9,12702,ENSMUSG00000053113,conserved gene and region,11,117967759,117969258,1500,*,1500,136,0.671333333,0.805559943,0.090666667,1.37E-96,CpGisland,TRUE,NA,NRS
23809,cg00419202,-0.000000794,0.00000239,-0.331898349,0.7401903,loss,ns,0.0000114,0.00000406,2.803138465,0.005379666,pos,ns,0.002469726,0.001190391,2.074718601,0.038837411,pos,ns,1.410749728,-0.0000885,0.0000409,-2.16241903,0.031350444,neg,ns,0.942586317,Gm42927,Gm42927_Intergenic_downstream,3,120429474,120429523,120429522,120429523,50,+,CAGCTTAGCTGCAATTATTATGGAATGTCTGAGGTATAATTTCCCCTGCG,Distal Intergenic,3,120735721,120739561,3841,2,Gm42927-201,310038,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,7,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23458,cg03436601,-0.000000361,0.00000957,-0.037736778,0.969921842,loss,ns,0.0000456,0.0000163,2.802782313,0.00538546,pos,ns,0.015191318,0.004764884,3.188181878,0.001577911,pos,ns,2.801917462,-0.000354167,0.000163864,-2.161347819,0.031433793,neg,ns,0.541849548,Rbfox3,Rbfox3_Exon,11,118502885,118502934,118502885,118502886,50,+,CGGGCTCGGTCAGCATCTGAGCTAGTTTCAAAAGTTACAAACCCAAAACC,"Exon (Rbfox3-205/Rbfox3, exon 7 of 14)",11,118489762,118909550,419789,2,Rbfox3-205,406616,Rbfox3-205;Rbfox3-203;Rbfox3-201;Rbfox3-202;Rbfox3-204;Rbfox3-206;Rbfox3-210;Rbfox3-209,Rbfox3;Rbfox3;Rbfox3;Rbfox3;Rbfox3;Rbfox3;Rbfox3;Rbfox3,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,13,52897,ENSMUSG00000025576,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26775,cg07607904,0.00000404,0.00000781,0.516767876,0.605686673,gain,ns,0.0000372,0.0000133,2.802513096,0.005389844,pos,ns,0.002574997,0.003888823,0.662153274,0.508364931,pos,ns,0.293824416,-0.000258739,0.000133736,-1.934694765,0.053937366,neg,ns,0.861434018,Iqsec2,Iqsec2_threeUTR,X,152222943,152222992,152222943,152222944,50,-,CGCCCTCACCAGAGGATGCCACCTCCGCCCCCACCCCCGCCGCCAGAGGA,3' UTR,20,152144268,152225235,80968,1,Iqsec2-207,78675,Iqsec2-207;Iqsec2-202;Iqsec2-203;Iqsec2-201,Iqsec2;Iqsec2;Iqsec2;Iqsec2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,16,245666,ENSMUSG00000041115,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5465,cg14481650,-0.0000175,0.0000112,-1.562957627,0.119082798,loss,ns,0.0000534,0.000019,2.802500294,0.005390053,pos,ns,0.01882386,0.005579535,3.373732869,0.000835738,pos,ns,3.077930033,-0.000529106,0.00019188,-2.757486686,0.006170257,neg,ns,0.738575082,Mvb12b,Mvb12b_Intergenic_upstream,2,34016709,34016758,34016709,34016710,50,+,CGCGGGGTAATTGTGTTCTGCCTGGTGCTGGGATTTACATAATTTCAGAC,Distal Intergenic,2,33729953,33887946,157994,2,Mvb12b-201,-128763,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,16,47,72543,ENSMUSG00000038740,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25173,cg02019879,-0.0000617,0.0000154,-4.020190894,0.0000731,loss,ns,0.0000731,0.0000261,2.802355624,0.00539241,pos,ns,0.030658255,0.007641607,4.012016697,0.0000755,pos,ns,4.121907536,-0.000982278,0.000262794,-3.737821148,0.000220984,neg,ns,0.704971836,Wdtc1,Wdtc1_Intron,4,133299876,133299925,133299924,133299925,50,-,TGCAGCCAGACGATGGCACACCAGCTGGCCTGTCTGTCTGGGCAGAGCCG,"Intron (Wdtc1-201/Wdtc1, intron 12 of 15)",4,133292459,133339324,46866,2,Wdtc1-201,39399,Wdtc1-201;Wdtc1-202,Wdtc1;Wdtc1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,3,230796,ENSMUSG00000037622,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20424,cg02385429,0.000101163,0.00000673,15.02297329,1.05E-38,gain,yes,-0.0000321,0.0000114,-2.802200756,0.005394934,neg,ns,0.002187791,0.003351521,0.652775448,0.514384841,pos,ns,0.288711838,0.00014255,0.000115259,1.236781578,0.217104316,pos,ns,0.14298117,Hoxc4,Hoxc4_Exon,15,103035063,103035112,103035063,103035064,50,+,CGCCAGCCTGCAGCCAGCCAGCCCCCGACCATCCCTCCAGCGCCGCCAGC,"Exon (Hoxc4-202/Hoxc4, exon 2 of 4)",15,103018934,103036405,17472,1,Hoxc4-202,16129,Hoxc4-202;Hoxc4-201,Hoxc4;Hoxc4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,91,15423,ENSMUSG00000075394,conserved gene and region,15,103034736,103035107,372,*,372,27,0.626344086,0.794494542,0.072580645,4.60E-17,CpGisland,TRUE,NA,NRS
27659,cg16737995,-0.000000848,0.0000016,-0.528988187,0.597192199,loss,ns,0.00000763,0.00000272,2.80210853,0.005396438,pos,ns,0.002206977,0.000797748,2.76650846,0.006006149,pos,ns,2.221403892,-0.0000569,0.0000274,-2.072785048,0.039018354,neg,ns,0.965187181,Cep170,Cep170_threeUTR,1,176750091,176750140,176750091,176750092,50,-,CGGTTTGATCCAAATTCATCTTCTGAGGTGGAAGCATAATCAGTAGGAAA,3' UTR,1,176733653,176807124,73472,2,Cep170-201,56984,Cep170-201;Cep170-203;Cep170-215;Cep170-212;Cep170-211;Cep170-204;Cep170-214;Cep170-206;Cep170-213,Cep170;Cep170;Cep170;Cep170;Cep170;Cep170;Cep170;Cep170;Cep170,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,4,545389,ENSMUSG00000057335,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11351,cg11194264,-0.0000185,0.00000635,-2.91974701,0.003759878,loss,ns,-0.0000302,0.0000108,-2.802057229,0.005397275,neg,ns,0.002874861,0.003159657,0.909864963,0.363600606,pos,ns,0.439375402,-0.00028429,0.00010866,-2.61631668,0.009323723,neg,ns,0.838147022,Clk3,Clk3_Exon,9,57758597,57758646,57758645,57758646,50,-,GAGGTAAAGTTTTACGAAAGGTGGCTGTACATCGCTCTTGGAGCCAATCG,"Exon (Clk3-207/Clk3, exon 3 of 12)",9,57750624,57765103,14480,2,Clk3-207,6457,Clk3-207;Clk3-201;Clk3-205;Clk3-203;Clk3-206;Clk3-209;Clk3-208;Clk3-204,Clk3;Clk3;Clk3;Clk3;Clk3;Clk3;Clk3;Clk3,0;0;0;0;-3276;0;5662;6207,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,14,102414,ENSMUSG00000032316,conserved gene and region,9,57758611,57758779,169,*,169,14,0.615384615,0.908602151,0.082840237,7.36E-10,CpGisland,TRUE,U12,Tr-I
7181,cg24991852,-0.00000844,0.00000604,-1.396630757,0.163523728,loss,ns,0.0000288,0.0000103,2.801974295,0.005398628,pos,ns,0.003680648,0.003008429,1.223445536,0.222090608,pos,ns,0.653469808,-0.0000586,0.00010346,-0.566821384,0.57124571,neg,ns,0.892486455,Gria3,Gria3_Intron,X,41565044,41565093,41565044,41565045,50,-,CGCTGATGTAGAAAATCCAAACAAGGAGATACTTAGGTCTACAAATAACC,"Intron (Gria3-205/Gria3, intron 5 of 11)",20,41400854,41613099,212246,1,Gria3-205,164190,Gria3-205;Gria3-202;Gria3-201;Gria3-208;Gria3-206;Gria3-207;Gria3-209,Gria3;Gria3;Gria3;Gria3;Gria3;Gria3;Gria3,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,26,53623,ENSMUSG00000001986,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16504,cg10160701,-0.0000616,0.0000254,-2.425504339,0.015857863,loss,ns,0.000120924,0.0000432,2.8017697,0.005401966,pos,ns,0.12512121,0.012644355,9.895420409,3.04E-20,pos,yes,19.51649332,-0.003435032,0.000434838,-7.899560521,4.91E-14,neg,yes,0.396754383,Fbln1,Fbln1_Exon,15,85232565,85232614,85232613,85232614,50,+,CATAACTGCCTCCCCGATTTTATCTGTCAGAATACTCTGGGATCCTTCCG,"Exon (Fbln1-201/Fbln1, exon 8 of 17)",15,85205949,85286535,80587,1,Fbln1-201,26616,Fbln1-201;Fbln1-202,Fbln1;Fbln1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,14114,ENSMUSG00000006369,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12638,cg18357091,-0.0000103,0.00000706,-1.458440504,0.145731561,loss,ns,0.0000336,0.000012,2.801356181,0.00540872,pos,ns,0.008618656,0.003511448,2.45444509,0.014659694,pos,ns,1.833875098,-0.000250163,0.000120758,-2.071598508,0.039129747,neg,ns,0.890457627,Ttc21b,Ttc21b_Exon,2,66201237,66201286,66201237,66201238,50,-,CGAGCTTTATTAAAATGTCGAAGGGCATCATTTGGTTCTCCAGTGTACCT,"Exon (Ttc21b-201/Ttc21b, exon 24 of 29)",2,66184327,66256617,72291,2,Ttc21b-201,55331,Ttc21b-201;Ttc21b-202,Ttc21b;Ttc21b,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,73668,ENSMUSG00000034848,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27264,cg04696266,-0.00000745,0.0000129,-0.579428772,0.562720719,loss,ns,0.0000612,0.0000219,2.800982072,0.005414836,pos,ns,-0.002131313,0.006401809,-0.332923557,0.739417024,neg,ns,0.131110555,0.000222756,0.000220158,1.01180256,0.312421531,pos,ns,0.677896669,Reps2,Reps2_Exon,X,162552568,162552617,162552616,162552617,50,-,CCGCAGTTTGCTGTAGCCATGGCTCAAGGGCACCCTCTGGTAATGAGGCG,Promoter (<=1kb),20,162546220,162552579,6360,2,Reps2-204,0,Reps2-203;Reps2-201;Reps2-202;Reps2-205;Reps2-204,Reps2;Reps2;Reps2;Reps2;Reps2,0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,194590,ENSMUSG00000040855,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26979,cg05434846,-0.00000851,0.00000574,-1.482594792,0.139197954,loss,ns,0.0000273,0.00000976,2.800933823,0.005415626,pos,ns,0.009029849,0.002858069,3.159422696,0.001736769,pos,ns,2.760257989,-0.00019999,0.0000983,-2.034719957,0.04272973,neg,ns,0.854422656,Acbd6,Acbd6_Intergenic_downstream,1,155693420,155693469,155693420,155693421,50,-,CGAAGCTTGGCATCCACTCCAGGGAATCACTTTAATTGAGGAGCATTAAA,Downstream (2-3kb),1,155686991,155688371,1381,1,Acbd6-205,6478,Acbd6-201;Lhx4-201,Acbd6;Lhx4,0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,1,7,72482,ENSMUSG00000033701,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15749,cg00185982,0.0000033,0.00000464,0.711027053,0.4776021,gain,ns,0.0000221,0.00000788,2.800909469,0.005416024,pos,ns,0.003353736,0.002307583,1.453354669,0.147136851,pos,ns,0.832278542,-0.0000386,0.0000794,-0.486252237,0.627131894,neg,ns,0.53569561,Pkdcc,Pkdcc_Intergenic_upstream,17,83133367,83133416,83133415,83133416,50,+,GATTTCCTACGGGCAGACTTGAAAGTGACTCGGAACTCTTTGCATGCCCG,Distal Intergenic,17,83215292,83225070,9779,1,Pkdcc-204,-81876,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,10,106522,ENSMUSG00000024247,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25144,cg04801829,-0.000000962,0.00000278,-0.346232675,0.729402733,loss,ns,-0.0000132,0.00000472,-2.800704069,0.005419386,neg,ns,-0.0000919,0.001383333,-0.066400182,0.947102027,neg,ns,0.023603234,-0.0000582,0.0000476,-1.222680761,0.222379032,neg,ns,0.930913037,Pik3c2b,Pik3c2b_Exon,1,133066312,133066361,133066360,133066361,50,-,CAGGGCAATGGGGAACACTGGAAGTCCCTGGAGTCAGTGGGCATCAGCCG,"Exon (Pik3c2b-204/Pik3c2b, exon 2 of 2)",1,133045667,133067229,21563,1,Pik3c2b-204,20645,Pik3c2b-204;Pik3c2b-203;Pik3c2b-202;Pik3c2b-201;Pik3c2b-205,Pik3c2b;Pik3c2b;Pik3c2b;Pik3c2b;Pik3c2b,0;0;0;0;-2218,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,240752,ENSMUSG00000026447,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20784,cg19911083,0.00000352,0.0000132,0.265959724,0.790447023,gain,ns,0.000063,0.0000225,2.800551942,0.005421877,pos,ns,0.021148574,0.006588194,3.210071379,0.001466129,pos,ns,2.83382773,-0.000794221,0.000226567,-3.505448678,0.000523085,neg,ns,0.749114508,Tlk2,Tlk2_Exon,11,105210559,105210608,105210559,105210560,50,+,CGGGCCAGGAACCAGCCCTGGCAGAAGTGTTCCACCAGTTGCACGATCCT,"Exon (Tlk2-204/Tlk2, exon 6 of 22)",11,105178807,105283959,105153,1,Tlk2-203,31752,Tlk2-203;Tlk2-206;Tlk2-204;Tlk2-202;Tlk2-201;Tlk2-209;Tlk2-207;Tlk2-211;Tlk2-205;Tlk2-212,Tlk2;Tlk2;Tlk2;Tlk2;Tlk2;Tlk2;Tlk2;Tlk2;Tlk2;Tlk2,0;29813;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,5,24086,ENSMUSG00000020694,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1700,cg13875257,0.00000279,0.00000312,0.89403534,0.37199655,gain,ns,-0.0000149,0.0000053,-2.800489208,0.005422904,neg,ns,-0.005525548,0.001553736,-3.556296694,0.000434852,neg,ns,3.36165899,0.000109241,0.0000534,2.044450072,0.041753588,pos,ns,0.87415372,Ss18,Ss18_Intergenic_downstream,18,14621945,14621994,14621945,14621946,50,+,CGTGCCGCATCAGGAAATCCTGACTTTTTGGTGCCAAGGGGGTAATTAAT,Downstream (2-3kb),18,14633542,14637406,3865,2,Ss18-212,15412,Ss18-202;Ss18-201;Ss18-210;Ss18-203;Ss18-206;Ss18-205,Ss18;Ss18;Ss18;Ss18;Ss18;Ss18,0;0;0;0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,2,10,268996,ENSMUSG00000037013,conserved gene and region,18,14621801,14621951,151,*,151,12,0.516556291,1.211229947,0.079470199,2.68E-08,CpGisland,TRUE,U11,Tr-P
12354,cg18800972,-0.000285395,0.0000291,-9.792258687,6.65E-20,loss,yes,-0.000138517,0.0000495,-2.79756348,0.005471021,neg,ns,0.112270466,0.014505727,7.73973364,1.42E-13,pos,yes,12.84834286,-0.003881906,0.000498851,-7.78169779,1.07E-13,neg,yes,0.655050601,Smad6,Smad6_Intron,9,63997977,63998026,63997977,63997978,50,-,CGCTGTGTGCACGGCCCCTTTAATAAGTTATTTCCGTGGAAAACCCTGGT,"Intron (Smad6-201/Smad6, intron 3 of 3)",9,63953076,64022059,68984,2,Smad6-201,24033,Smad6-201;Smad6-202,Smad6;Smad6,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,19,17130,ENSMUSG00000036867,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25278,cg17469509,0.0000409,0.0000133,3.083754383,0.002227978,gain,ns,0.000063,0.0000225,2.797107631,0.005478553,pos,ns,0.027086339,0.006601696,4.102936233,0.0000522,pos,ns,4.282356912,-0.000562531,0.000227032,-2.477763193,0.013753373,neg,ns,0.335889791,Gm43559,Gm43559_Intergenic_upstream,3,134302822,134302871,134302870,134302871,50,-,TTGAAAAGCAGCACAGGGCCAGGCAGATCTATTAGAAATTCCCATCCACG,Distal Intergenic,3,134272045,134272510,466,2,Gm43559-201,-30361,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,7,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15337,cg03780980,0.0000113,0.00000347,3.254918321,0.001259651,gain,ns,-0.0000165,0.00000589,-2.796814716,0.005483397,neg,ns,0.011229044,0.001725309,6.50842337,3.05E-10,pos,ns,9.515505651,-0.000393383,0.0000593,-6.630054056,1.49E-10,neg,yes,0.905616386,Zfp207,Zfp207_Exon,11,80389762,80389811,80389810,80389811,50,-,ACATTTTCACAGATTGCATCATCAGAGAAAATACACCCAGTCATTTTGCG,"Exon (Zfp207-207/Zfp207, exon 6 of 17)",11,80383279,80396245,12967,1,Zfp207-206,6483,Zfp207-206;Zfp207-207;Zfp207-208;Zfp207-201;Zfp207-203;Zfp207-202;Zfp207-205;Zfp207-204,Zfp207;Zfp207;Zfp207;Zfp207;Zfp207;Zfp207;Zfp207;Zfp207,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,22680,ENSMUSG00000017421,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22210,cg16856084,-0.0000086,0.00000496,-1.735194929,0.083700092,loss,ns,0.0000235,0.00000842,2.796314807,0.005491674,pos,ns,0.00639531,0.002466878,2.592470628,0.009980421,pos,ns,2.000851153,-0.000271586,0.0000848,-3.201313263,0.001509943,neg,ns,0.896195091,Spata6,Spata6_Exon,4,111828274,111828323,111828274,111828275,50,-,CGACCCATCTTTGAGAACAGCATGGACAAGATGTACAGGAACTTATACAA,"Exon (Spata6-201/Spata6, exon 13 of 13)",4,111719984,111829142,109159,1,Spata6-201,108290,Spata6-201;Spata6-203;Spata6-212;Spata6-211;Spata6-207,Spata6;Spata6;Spata6;Spata6;Spata6,0;0;0;0;6011,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,Exon,4,5,67946,ENSMUSG00000034401,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9326,cg08493441,-0.0000144,0.00000468,-3.075526287,0.00228848,loss,ns,0.0000223,0.00000796,2.795909627,0.005498391,pos,ns,0.000941573,0.002331687,0.40381622,0.686626286,pos,ns,0.163279575,0.000118304,0.0000802,1.475364015,0.141129626,pos,ns,0.888244635,Zdhhc9,Zdhhc9_Exon,X,48183102,48183151,48183150,48183151,50,+,GGTAGTTCCTCTTTCCAACACAATTCCCCACCCAGGGGCAGTGATGGTCG,"Exon (Zdhhc9-201/Zdhhc9, exon 5 of 10)",20,48171969,48208687,36719,2,Zdhhc9-201,25536,Zdhhc9-201;Zdhhc9-202;Zdhhc9-203,Zdhhc9;Zdhhc9;Zdhhc9,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,208884,ENSMUSG00000036985,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16356,cg02086782,0.0000914,0.00000938,9.746190468,9.42E-20,gain,yes,-0.0000445,0.0000159,-2.795770335,0.005500702,neg,ns,-0.002801755,0.004666121,-0.600446193,0.548647616,neg,ns,0.260706503,-0.0000614,0.000160468,-0.38280155,0.702129251,neg,ns,0.659553017,Nfix,Nfix_Exon,8,84771785,84771834,84771785,84771786,50,-,CGGAGTGTGGACAAAGTAAGCCAGATAAAGATCCAGTTCTTTGATTGTGA,"Exon (Nfix-204/Nfix, exon 2 of 11)",8,84704712,84773396,68685,2,Nfix-204,1562,Nfix-204;Nfix-201;Nfix-202;Nfix-203;Nfix-205,Nfix;Nfix;Nfix;Nfix;Nfix,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,20,49,18032,ENSMUSG00000001911,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
12322,cg18313683,0.0000318,0.00000703,4.520044384,0.00000881,gain,ns,-0.0000334,0.0000119,-2.795688099,0.005502067,neg,ns,0.00159931,0.003497846,0.457227021,0.64782813,pos,ns,0.188540198,-0.000289739,0.000120291,-2.408661153,0.01659433,neg,ns,0.923072305,Smad6,Smad6_Exon,9,63953917,63953966,63953965,63953966,50,-,GCTGCCCTGAGGTAGGTCGTAGAAGATGCTGACGGCCTGGTCGTACACCG,"Exon (Smad6-201/Smad6, exon 4 of 4)",9,63953076,64022059,68984,2,Smad6-201,68093,Smad6-201;Smad6-202,Smad6;Smad6,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,19,17130,ENSMUSG00000036867,conserved gene but different region,9,63953582,63954064,483,*,483,46,0.658385093,0.879398377,0.095238095,3.65E-34,CpGisland,TRUE,NA,NRS
16946,cg13542727,-0.0000537,0.0000149,-3.593011525,0.000380043,loss,ns,0.000071,0.0000254,2.795235279,0.005509587,pos,ns,0.009880896,0.007437436,1.328535294,0.184978477,pos,ns,0.7328788,-0.000305673,0.000255773,-1.19509521,0.232963308,neg,ns,0.559498957,Il1rapl1,Il1rapl1_Intron,X,87583921,87583970,87583921,87583922,50,-,CGGCTTATCAATGTTTAACAGACTTCAGTACAATGTTGAATATAGGATTA,"Intron (Il1rapl1-203/Il1rapl1, intron 2 of 10)",20,86740870,88115645,1374776,2,Il1rapl1-203,531675,Il1rapl1-203;Il1rapl1-201;Il1rapl1-202,Il1rapl1;Il1rapl1;Il1rapl1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,18,331461,ENSMUSG00000052372,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25943,cg18736324,-0.0000217,0.0000148,-1.467118221,0.143357651,loss,ns,-0.0000703,0.0000252,-2.794699362,0.005518499,neg,ns,0.020303084,0.007371735,2.754179933,0.006231417,pos,ns,2.205413201,0.000142616,0.000253513,0.562558292,0.574142279,pos,ns,0.919304814,Spen,Spen_Exon,4,141517179,141517228,141517227,141517228,50,-,GCCCATGTTGTAAAGTCCGCTCTCGAGGATCTCTATAGTAATCCTGATCG,"Exon (Spen-201/Spen, exon 3 of 15)",4,141467890,141538449,70560,2,Spen-201,21221,Spen-201;Spen-202;Spen-203;Spen-205,Spen;Spen;Spen;Spen,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,17,19,56381,ENSMUSG00000040761,conserved gene and region,4,141517106,141517299,194,*,194,13,0.510309278,1.030228758,0.067010309,4.64E-08,CpGisland,TRUE,U10,Tr-S
20425,cg24534517,0.0000188,0.00000245,7.684358357,2.04E-13,gain,yes,-0.0000116,0.00000416,-2.794135393,0.005527892,neg,ns,-0.001126875,0.001218921,-0.924485282,0.35595277,neg,ns,0.448607623,0.0000675,0.0000419,1.609880736,0.108441675,pos,ns,0.049699208,Hoxc4,Hoxc4_Exon,15,103035103,103035152,103035103,103035104,50,+,CGCCGCCAGCAAGCAACCCATAGTCTACCCATGGATGAAAAAAATTCACG,"Exon (Hoxc4-202/Hoxc4, exon 2 of 4)",15,103018934,103036405,17472,1,Hoxc4-202,16169,Hoxc4-202;Hoxc4-201,Hoxc4;Hoxc4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,91,15423,ENSMUSG00000075394,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3066,cg09816614,-0.00000165,0.00000317,-0.52076318,0.602903513,loss,ns,0.000015,0.00000538,2.793866088,0.005532382,pos,ns,0.004664738,0.001576431,2.959049435,0.003323615,pos,ns,2.478389241,-0.000105756,0.0000542,-1.950742113,0.051988511,neg,ns,0.938950601,Lrmda,Lrmda_Intron,14,22505692,22505741,22505740,22505741,50,-,AAAACCTAAATTGTATAACATTACTCACAATAACGCATATGTTATAATCG,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,485980,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206;Lrmda-202,Lrmda;Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18444,cg17097703,-0.0000141,0.00000326,-4.316370414,0.0000214,loss,ns,0.0000155,0.00000554,2.793437137,0.005539542,pos,ns,0.001900161,0.00162165,1.171745448,0.242199038,pos,ns,0.615827587,-0.000103464,0.0000558,-1.855238642,0.064511304,neg,ns,0.934727489,Trpc1,Trpc1_threeUTR,9,95736846,95736895,95736894,95736895,50,+,TTGGTCGATGATTAAGTAGTATATCAACAGCTCCCACTACTTCAGAGTCG,3' UTR,9,95705082,95750358,45277,2,Trpc1-204,13463,Trpc1-204;Trpc1-201;Trpc1-206;Trpc1-207;Trpc1-202,Trpc1;Trpc1;Trpc1;Trpc1;Trpc1,0;0;0;0;-4637,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,5,22063,ENSMUSG00000032839,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13199,cg04449857,-0.0000222,0.000014,-1.588288824,0.113240408,loss,ns,0.0000662,0.0000237,2.793120868,0.005544825,pos,ns,0.030685417,0.006943203,4.419490313,0.0000137,pos,ns,4.8633798,-0.001338504,0.000238776,-5.605686602,4.59E-08,neg,yes,0.789021759,Gm7627,Gm7627_Intergenic_upstream,7,69739912,69739961,69739912,69739913,50,-,CGATTAGACATATTTACGGGAAAAGTCAATGGATAAGACATTAGAGGCCA,Distal Intergenic,7,69605842,69606840,999,2,Gm7627-201,-133121,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,11,665410,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18200,cg21343971,-0.000000985,0.00000151,-0.651603382,0.515139835,loss,ns,0.00000717,0.00000257,2.792737801,0.005551231,pos,ns,0.002580765,0.000752624,3.429020867,0.000687724,pos,ns,3.162585867,-0.0000568,0.0000259,-2.195912574,0.028838778,neg,ns,0.963523058,Ap3b1,Ap3b1_Intron,13,94471310,94471359,94471310,94471311,50,+,CGATTAAGTTTTGAGTGCCATGTTTTTAGTTGTATTTCCACATTCATTAT,"Intron (Ap3b1-201/Ap3b1, intron 15 of 26)",13,94358960,94566317,207358,1,Ap3b1-201,112350,Ap3b1-201;Ap3b1-205,Ap3b1;Ap3b1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,55,11774,ENSMUSG00000021686,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17737,cg03519232,0.000107298,0.00000861,12.4672331,3.43E-29,gain,yes,-0.0000408,0.0000146,-2.792510763,0.005555031,neg,ns,-0.008033709,0.004283477,-1.875511301,0.061662167,neg,ns,1.20998122,0.000228861,0.000147308,1.55361825,0.12129579,pos,ns,0.699447285,Fto,Fto_Intron,8,91552335,91552384,91552383,91552384,50,-,AGTCAGCTGGGATGTAATTAAGACTCTGAGAACAGGCTGTCTTCTCCACG,"Intron (Fto-201/Fto, intron 8 of 8)",8,91313525,91668439,354915,1,Fto-201,238810,Fto-201;Fto-205,Fto;Fto,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,26,26383,ENSMUSG00000055932,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3759,cg14822418,-0.0000581,0.00000877,-6.619044362,1.59E-10,loss,yes,0.0000416,0.0000149,2.791563693,0.005570907,pos,ns,-0.004440869,0.004367129,-1.016885358,0.310000939,neg,ns,0.508636991,0.00000856,0.000150185,0.057009942,0.954574004,pos,ns,0.755733815,5730522E02Rik,5730522E02Rik_Intron,11,25287846,25287895,25287894,25287895,50,-,TCCAATTTGGGACAATAAATTTCCTCGGAACCTGTTCTTTTGCTGACTCG,"Intron (4933427E13Rik-204/4933427E13Rik-204, intron 1 of 1)",11,25602816,25620098,17283,2,5730522E02Rik-205,332252,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,90,70626,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15230,cg06673387,0.00000706,0.00000288,2.450215522,0.014829641,gain,ns,0.0000137,0.0000049,2.790355178,0.005591226,pos,ns,-0.002496031,0.001434694,-1.739765582,0.082892664,neg,ns,1.0814839,0.000183935,0.0000493,3.72799287,0.000229392,pos,ns,0.053022933,Cbx6,Cbx6_fiveUTR,15,79834190,79834239,79834190,79834191,50,+,CGCCCACTGCAGACAGCTCCATCTTGCTCAGCGGCACCCACAGCCCATAA,Promoter (<=1kb),15,79826141,79834237,8097,2,Cbx6-202,0,Cbx6-203;Cbx6-208;Cbx6-202;Cbx6-201;Cbx6-206;Cbx6-207;Cbx6-204;Cbx6-205;Npcd-201;Npcd-202,Cbx6;Cbx6;Cbx6;Cbx6;Cbx6;Cbx6;Cbx6;Cbx6;Npcd;Npcd,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,4,494448,ENSMUSG00000089715,conserved gene but different region,15,79834018,79834527,510,*,510,64,0.733333333,0.933638444,0.125490196,9.09E-56,CpGisland,TRUE,U1,Pr-A
1901,cg18536909,0.0000234,0.0000101,2.321020743,0.020934113,gain,ns,0.0000477,0.0000171,2.790137049,0.005594901,pos,ns,0.005698486,0.005012567,1.136839847,0.256483239,pos,ns,0.590941011,-0.00019694,0.000172382,-1.14246358,0.25414298,neg,ns,0.649834823,Slc8a2,Slc8a2_threeUTR,7,16160085,16160134,16160085,16160086,50,-,CGAAGAGGAGACCGAGGGTCCCAGAGGACCAATGCTACAAGCCAGCAAAT,3' UTR,7,16129826,16161063,31238,1,Slc8a2-202,30259,Slc8a2-202;Slc8a2-201,Slc8a2;Slc8a2,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,110891,ENSMUSG00000030376,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11539,cg08353069,0.0000723,0.0000115,6.272848402,1.19E-09,gain,yes,-0.0000546,0.0000196,-2.790042332,0.005596497,neg,ns,-0.00531557,0.005734389,-0.926963562,0.354666567,neg,ns,0.450179749,0.000443928,0.000197205,2.251099338,0.025079527,pos,ns,0.600649602,Minar2,Minar2_Exon,18,59062406,59062455,59062454,59062455,50,+,CTCTGTTTTGCCAAATAACAACCATCCTGACAAATTCCTGCAGCTTGACG,Promoter (<=1kb),18,59062248,59076962,14715,1,Minar2-202,158,Minar2-202;Minar2-205;Minar2-201;Minar2-207;Minar2-203;Minar2-204;Minar2-206,Minar2;Minar2;Minar2;Minar2;Minar2;Minar2;Minar2,0;0;-7;-11;-39;-55;-56,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,225583,ENSMUSG00000050875,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4833,cg06149692,-0.000000768,0.0000035,-0.219598632,0.826328283,loss,ns,-0.0000166,0.00000594,-2.790025251,0.005596785,neg,ns,-0.003748293,0.001739976,-2.154220778,0.031993213,neg,ns,1.494942141,0.000015,0.0000598,0.251182935,0.801839094,pos,ns,0.898057171,Agbl5,Agbl5_Exon,5,30892471,30892520,30892519,30892520,50,+,GAGACTCCATCTAGCTTTGTCTTCAATGGCTTTCTGGACTTCATCCTCCG,"Exon (Agbl5-201/Agbl5, exon 6 of 11)",5,30888852,30896687,7836,1,Agbl5-201,3619,Agbl5-203;Agbl5-201;Agbl5-207;Agbl5-213;Agbl5-205;Agbl5-218;Agbl5-214;Agbl5-208;Agbl5-215;Agbl5-211;Agbl5-209;Agbl5-202;Agbl5-204;Agbl5-210;Agbl5-217;Agbl5-216;Agbl5-212;Agbl5-206,Agbl5;Agbl5;Agbl5;Agbl5;Agbl5;Agbl5;Agbl5;Agbl5;Agbl5;Agbl5;Agbl5;Agbl5;Agbl5;Agbl5;Agbl5;Agbl5;Agbl5;Agbl5,0;0;0;0;0;0;0;0;0;0;0;0;0;2189;0;-2477;-2619;-3413,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,5,231093,ENSMUSG00000029165,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9047,cg24455002,-0.00000251,0.00000245,-1.024480717,0.306407037,loss,ns,0.0000116,0.00000416,2.789817337,0.00560029,pos,ns,0.001599643,0.001217816,1.31353399,0.18997439,pos,ns,0.721304941,-0.000139221,0.0000419,-3.324242063,0.000992913,neg,ns,0.945096367,Nova1,Nova1_threeUTR,12,46698871,46698920,46698919,46698920,50,+,CACAAAACATGCAAATTACCGAGTATTAGAAACTGCATTGGCTGCTAGCG,3' UTR,12,46694517,46818929,124413,2,Nova1-201,120009,Nova1-201;Nova1-204,Nova1;Nova1,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,10,24,664883,ENSMUSG00000021047,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20146,cg02917100,-0.000011,0.00000847,-1.302665254,0.193655941,loss,ns,0.0000401,0.0000144,2.78968218,0.00560257,pos,ns,0.000402875,0.004213728,0.095610139,0.923891988,pos,ns,0.034378799,0.000219938,0.00014491,1.517760492,0.130093903,pos,ns,0.965017682,Calcoco1,Calcoco1_Intergenic_upstream,15,102737384,102737433,102737432,102737433,50,+,CTCGGAATTGGTGTAATTCAGAGAAATTAATGACGACTTTCCGCGGGACG,Distal Intergenic,15,102706777,102722178,15402,2,Calcoco1-201,-15206,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,20,29,67488,ENSMUSG00000023055,conserved gene but different region,15,102737359,102737627,269,*,269,21,0.565055762,0.991922739,0.078066915,4.85E-14,CpGisland,TRUE,U11,Tr-P
27565,cg04077179,0.0000153,0.00000932,1.644157332,0.101157402,gain,ns,0.0000442,0.0000158,2.789361644,0.005607981,pos,ns,0.011917498,0.004637377,2.569879239,0.010640441,pos,ns,1.973040356,-0.000313521,0.000159479,-1.965906441,0.050201625,neg,ns,0.870383477,Mid1,Mid1_Exon,X,169927604,169927653,169927652,169927653,50,-,AAACTGGTTGGGCGGCACCGCGATCATCAGGTGGCAGCTTTGAGTGAGCG,"Exon (Mid1-204/Mid1, exon 2 of 10)",20,169685199,169990795,305597,1,Mid1-206,242405,Mid1-206;Mid1-204;Mid1-201;Mid1-205;Mid1-202;Mid1-214;Mid1-215;Mid1-211,Mid1;Mid1;Mid1;Mid1;Mid1;Mid1;Mid1;Mid1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,8,17318,ENSMUSG00000035299,conserved gene and region,X,169927461,169927683,223,*,223,13,0.533632287,0.835928489,0.058295964,0.000000236,CpGisland,TRUE,NA,NRS
1074,cg09633014,0.00000479,0.0000119,0.402496962,0.687595726,gain,ns,0.0000563,0.0000202,2.788590938,0.005621009,pos,ns,0.005142233,0.005917368,0.869006792,0.385515714,pos,ns,0.413957915,0.000113003,0.000203498,0.55530356,0.579087531,pos,ns,0.466609511,Gm14515,Gm14515_Intergenic_upstream,X,11494185,11494234,11494185,11494186,50,-,CGCCTCTCCCCGAGTCCCTCTGAGGCCCAGATGGTCAGGGAAGCCCTTTC,Distal Intergenic,20,11601354,11601569,216,1,Gm14515-201,-107169,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,21,28,,NA,mapped to different genes,X,11494085,11494196,112,*,112,10,0.669642857,0.797720798,0.089285714,0.000000188,CpGisland,TRUE,NA,NRS
14877,cg05628515,0.0000931,0.00000768,12.12928709,5.70E-28,gain,yes,-0.0000364,0.000013,-2.787983076,0.005631304,neg,ns,0.000848586,0.003821273,0.222069027,0.824406374,pos,ns,0.083858659,0.000225683,0.000131413,1.71735289,0.086913421,pos,ns,0.753191056,Flot2,Flot2_fiveUTR,11,78053365,78053414,78053413,78053414,50,-,TGTCTCTGGAGGTTATGACCATCCTGTGTCGCTGTGAGAATATTGAGACG,5' UTR,11,78037931,78060434,22504,1,Flot2-201,15434,Flot2-201;Flot2-205;Flot2-203;Flot2-202;Flot2-204,Flot2;Flot2;Flot2;Flot2;Flot2,0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,9,13,14252,ENSMUSG00000061981,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8657,cg25480877,-0.00000783,0.00000393,-1.994055149,0.047021743,loss,ns,0.0000186,0.00000667,2.787172763,0.005645054,pos,ns,0.005274699,0.00195433,2.698981267,0.00733662,pos,ns,2.134503993,-0.0000951,0.0000672,-1.414926864,0.158093636,neg,ns,0.92440992,Btrc,Btrc_Intron,19,45494038,45494087,45494086,45494087,50,-,AGTTATTAAGTTTTAGCAGCAGCCATCGATCAAGTTCACAAGTTAACACG,"Intron (Btrc-204/Btrc, intron 1 of 2)",19,45363734,45507736,144003,1,Btrc-204,130304,Btrc-204;Btrc-201;Btrc-210;Btrc-202;Btrc-203;Btrc-209,Btrc;Btrc;Btrc;Btrc;Btrc;Btrc,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,63,98,12234,ENSMUSG00000025217,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12074,cg06003285,-0.00000315,0.00000138,-2.281558855,0.023193146,loss,ns,0.00000654,0.00000235,2.787131358,0.005645757,pos,ns,0.001161695,0.000687768,1.689080598,0.092209471,pos,ns,1.03522447,-0.00000497,0.0000237,-0.210161749,0.833679493,neg,ns,0.04169845,Ints6,Ints6_fiveUTR,14,62760629,62760678,62760677,62760678,50,-,CGTGTCTATCAGGAACAGTAAGATGGGCATAGTGCTGGCCGGGGACACCG,Promoter (<=1kb),14,62676330,62761112,84783,2,Ints6-201,434,Ints6-201;Ints6-202;Ints6-206;Ints6-205;Ints6-204,Ints6;Ints6;Ints6;Ints6;Ints6,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,6,18130,ENSMUSG00000035161,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
13683,cg16971788,0.00000116,0.00000305,0.37956577,0.704527656,gain,ns,-0.0000144,0.00000517,-2.786602369,0.005654751,neg,ns,-0.003622926,0.001516075,-2.389673964,0.017460588,neg,ns,1.757941129,0.000110738,0.0000521,2.123946562,0.034466103,pos,ns,0.916196351,Mctp2,Mctp2_Intergenic_downstream,7,72048221,72048270,72048269,72048270,50,+,CACAGTGTGAAAATAGATTTAACCTTCACAGCGTATCGATCTCTACCCCG,Distal Intergenic,7,72080413,72110583,30171,2,Mctp2-203,62313,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,5,244049,ENSMUSG00000032776,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27678,cg10428890,-0.00000491,0.00000496,-0.990081423,0.322906474,loss,ns,0.0000235,0.00000842,2.785493734,0.005673642,pos,ns,0.005900849,0.002467824,2.391113825,0.017393528,pos,ns,1.75961232,-0.000141714,0.0000849,-1.669807132,0.095966927,neg,ns,0.918004087,Akt3,Akt3_Exon,1,177050038,177050087,177050038,177050039,50,+,CGTTTATTTGGATCCTTTATCAAGAGCCCTGAAAGCAATGATTTTGCATC,"Exon (Akt3-201/Akt3, exon 10 of 13)",1,177020073,177248805,228733,2,Akt3-201,198718,Akt3-201;Akt3-203;Akt3-202,Akt3;Akt3;Akt3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,14,23797,ENSMUSG00000019699,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11274,cg11156486,-0.000034,0.00000942,-3.611882905,0.000354463,loss,ns,0.0000446,0.000016,2.785019363,0.005681742,pos,ns,-0.004546295,0.004688752,-0.969617272,0.332993192,neg,ns,0.477564645,0.0000501,0.000161246,0.310491938,0.756395538,pos,ns,0.833118493,Gria1,Gria1_Intron,11,57310364,57310413,57310364,57310365,50,-,CGTTGCTGGTTACTCAAAGTGATATAGTGATACTCATCTTGCTATACTAG,"Intron (Gria1-201/Gria1, intron 13 of 15)",11,57011810,57330244,318435,1,Gria1-201,298554,Gria1-201;Gria1-202;Gria1-204,Gria1;Gria1;Gria1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,13,14799,ENSMUSG00000020524,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15705,cg18913164,-0.0000254,0.00000618,-4.116083821,0.0000495,loss,ns,0.0000292,0.0000105,2.784635551,0.005688304,pos,ns,0.001669484,0.003075192,0.542887779,0.587597175,pos,ns,0.230920301,-0.0000927,0.000105756,-0.876224876,0.381586253,neg,ns,0.809533848,Frem1,Frem1_Intron,4,82916837,82916886,82916885,82916886,50,+,TCAGAGAAATATATTAATTAACATGTCTACAGCTAGACTGCAGTAGCCCG,"Intron (Frem1-208/Frem1, intron 29 of 36)",4,82897920,83052167,154248,2,Frem1-208,135281,Frem1-208;Frem1-201;Frem1-202;Frem1-206;Frem1-204,Frem1;Frem1;Frem1;Frem1;Frem1,0;0;0;-2403;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,329872,ENSMUSG00000059049,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13295,cg10918079,0.0000798,0.00000682,11.70192363,1.92E-26,gain,yes,-0.0000323,0.0000116,-2.783978832,0.005699548,neg,ns,0.005044725,0.003395877,1.485544087,0.13841596,pos,ns,0.85881383,-0.0000249,0.000116784,-0.213570634,0.831022294,neg,ns,0.568061753,Dlg4,Dlg4_fiveUTR,11,70024067,70024116,70024115,70024116,50,+,TCCATGTCGGCTCGGAACAGATTCGCCTCCATGTGTCTCTGCGTGGTACG,5' UTR,11,70016942,70044954,28013,1,Dlg4-217,7125,Dlg4-217;Dlg4-205;Dlg4-204;Dlg4-209;Dlg4-202;Dlg4-215;Dlg4-203;Dlg4-219;Dlg4-210;Dlg4-214;Dlg4-206;Dlg4-211;Dlg4-222;Dlg4-216,Dlg4;Dlg4;Dlg4;Dlg4;Dlg4;Dlg4;Dlg4;Dlg4;Dlg4;Dlg4;Dlg4;Dlg4;Dlg4;Dlg4,0;0;0;0;0;0;0;0;0;0;0;0;-2883;-3672,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,4,13385,ENSMUSG00000020886,conserved gene but different region,11,70024074,70024158,85,*,85,10,0.647058824,1.142473118,0.117647059,1.22E-08,CpGisland,TRUE,U9,En-Pp
2002,cg06760134,-0.0000156,0.0000104,-1.495741891,0.135738247,loss,ns,0.0000492,0.0000177,2.783775461,0.005703034,pos,ns,0.004946777,0.005175921,0.95572894,0.33995389,pos,ns,0.468579985,-0.000181669,0.000177999,-1.020617085,0.308231714,neg,ns,0.836575233,Gm5721,Gm5721_Intergenic_downstream,6,16992251,16992300,16992299,16992300,50,+,TCACACTCTGATGACCTCTTCTCCTCATTAAAACGTTCCCAAAGACAGCG,Distal Intergenic,6,16925231,16926926,1696,1,Gm5721-201,67020,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,435881,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
635,cg00798698,0.0000636,0.0000102,6.207819814,1.72E-09,gain,yes,0.0000484,0.0000174,2.783518938,0.005707434,pos,ns,0.015032205,0.00509696,2.949248876,0.003427839,pos,ns,2.464979603,-0.000335885,0.000175284,-1.916233797,0.056254765,neg,ns,0.530690169,Usp27x,Usp27x_fiveUTR,X,7375037,7375086,7375085,7375086,50,+,TTCCTGGTCTCTGGGGTTCCACACCACACGAAGCACTGGTAGATAACCCG,Promoter (<=1kb),20,7371274,7375826,4553,2,Usp27x-202,740,Usp27x-202;Usp27x-203;Usp27x-201,Usp27x;Usp27x;Usp27x,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,6,54651,ENSMUSG00000046269,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22598,cg07645209,0.0000234,0.00000932,2.506423338,0.012707767,gain,ns,0.0000441,0.0000158,2.783106023,0.005714522,pos,ns,0.009886456,0.004639474,2.130943497,0.033880443,pos,ns,1.470050925,-0.000222542,0.000159551,-1.394799138,0.164075019,neg,ns,0.560447501,Otop3,Otop3_Exon,11,115344604,115344653,115344652,115344653,50,+,CCCTCTACTATGCCTTCTATGTGGCTGTGCTGCCCACCATGAGTCTGGCG,"Exon (Otop3-202/Otop3, exon 6 of 7)",11,115334731,115346927,12197,1,Otop3-202,9873,Hid1-201;Hid1-202;Hid1-206;Otop3-202;Otop3-201,Hid1;Hid1;Hid1;Otop3;Otop3,23066;23103;6350;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,69602,ENSMUSG00000018862,conserved gene and region,11,115344539,115344816,278,*,278,16,0.597122302,0.647170086,0.057553957,7.61E-09,CpGisland,TRUE,NA,NRS
1402,cg08512223,0.000000567,0.00000692,0.081948163,0.934740819,gain,ns,-0.0000327,0.0000118,-2.783071282,0.005715119,neg,ns,-0.009039709,0.003445106,-2.623927778,0.00912243,neg,ns,2.039889458,-0.000021,0.000118477,-0.177488405,0.859240686,neg,ns,0.802457539,Med14,Med14_Exon,X,12689327,12689376,12689375,12689376,50,-,ACCATGTGGACTAGCAAAACTGGCCCCTGGTCCTATTGAGATTCCATGCG,"Exon (Med14-202/Med14, exon 24 of 31)",20,12675369,12762073,86705,2,Med14-202,72697,Med14-202;Med14-203;Med14-204,Med14;Med14;Med14,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,7,26896,ENSMUSG00000064127,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26206,cg13156511,-0.0000374,0.0000118,-3.175697495,0.001645144,loss,ns,0.0000557,0.00002,2.782814771,0.005719527,pos,ns,-0.003804375,0.005866614,-0.648478846,0.517155348,neg,ns,0.28637898,0.000121748,0.000201752,0.603451986,0.546649322,pos,ns,0.723154989,Trpc5,Trpc5_Exon,X,144419696,144419745,144419696,144419697,50,-,CGTCCCAAAGAGATCTGCAGAGGTCCTAAGTGGGAGTTGGCTGTGAACAG,"Exon (Trpc5-201/Trpc5, exon 6 of 11)",20,144381671,144688180,306510,2,Trpc5-201,268435,Trpc5-201;Trpc5-202,Trpc5;Trpc5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,22067,ENSMUSG00000041710,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22331,cg14331586,-0.0000047,0.00000352,-1.335602871,0.182658881,loss,ns,0.0000166,0.00000598,2.782762399,0.005720428,pos,ns,0.002746692,0.001750642,1.568962727,0.117676751,pos,ns,0.929309331,-0.00007,0.0000602,-1.162555971,0.245903884,neg,ns,0.931153351,Dach2,Dach2_Intron,X,113304583,113304632,113304631,113304632,50,+,TCCCATACACTGCCAGCAATGTCAAAGAGATTGAAGCTTTTAAAGTGGCG,"Intron (Dach2-204/Dach2, intron 2 of 15)",20,113297510,113836386,538877,1,Dach2-204,7073,Dach2-204;Dach2-203;Dach2-202;Dach2-208;Dach2-205;Dach2-201;Dach2-207,Dach2;Dach2;Dach2;Dach2;Dach2;Dach2;Dach2,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,4,93837,ENSMUSG00000025592,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15694,cg03174933,-0.0000151,0.000012,-1.257521573,0.209511331,loss,ns,0.0000568,0.0000204,2.781928126,0.005734788,pos,ns,0.0074596,0.005986123,1.246148797,0.213650664,pos,ns,0.670295754,-0.000275111,0.000205862,-1.336386167,0.182403141,neg,ns,0.750424451,Rbm46,Rbm46_Exon,3,82864417,82864466,82864465,82864466,50,+,TCAATGCATTTTCCATTCATAACAGACATGGCAGCCACTGCATCTTCTCG,"Exon (Rbm46-201/Rbm46, exon 4 of 5)",3,82837228,82876483,39256,2,Rbm46-201,12017,Rbm46-201;Rbm46-202;Rbm46-203,Rbm46;Rbm46;Rbm46,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,633285,ENSMUSG00000033882,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13033,cg17157676,-0.000054,0.0000117,-4.626922152,0.00000546,loss,ns,0.0000551,0.0000198,2.781351135,0.005744738,pos,ns,0.003548833,0.005805113,0.611328726,0.541429997,pos,ns,0.266457687,-0.0000784,0.000199637,-0.392824421,0.694719147,neg,ns,0.642823751,Gm44533,Gm44533_Intergenic_downstream,7,69276814,69276863,69276862,69276863,50,-,ATTTTATTTTTTAGTATGTTATCAGCAAGCAAACCACCAGTATTAGCTCG,Distal Intergenic,7,69259595,69259862,268,1,Gm44533-201,17268,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25942,cg19713772,-0.00000584,0.0000106,-0.55004952,0.582681495,loss,ns,-0.0000502,0.000018,-2.781330354,0.005745097,neg,ns,0.011946394,0.005282695,2.261420135,0.024425916,pos,ns,1.612149139,0.000135603,0.000181671,0.746418299,0.455980444,pos,ns,0.933035078,Spen,Spen_Exon,4,141517202,141517251,141517202,141517203,50,-,CGAGGATCTCTATAGTAATCCTGATCGTAATGTCTTGTCCGATCAAATCC,"Exon (Spen-201/Spen, exon 3 of 15)",4,141467890,141538449,70560,2,Spen-201,21198,Spen-201;Spen-202;Spen-203;Spen-205,Spen;Spen;Spen;Spen,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,17,19,56381,ENSMUSG00000040761,conserved gene and region,4,141517106,141517299,194,*,194,13,0.510309278,1.030228758,0.067010309,4.64E-08,CpGisland,TRUE,U10,Tr-S
8515,cg14368704,0.0000185,0.00000537,3.451091103,0.000635788,gain,ns,0.0000254,0.00000912,2.780961899,0.00575146,pos,ns,0.00580198,0.002672265,2.1711848,0.030675526,pos,ns,1.513207983,-0.0000637,0.0000919,-0.692810152,0.488947379,neg,ns,0.876312123,Lbx1,Lbx1_Intergenic_upstream,19,45272460,45272509,45272460,45272461,50,+,CGTTCCACACAGCAGCGATTTTCACCGACAGAACTTCAATAAATCTTGTT,Distal Intergenic,19,45232684,45235812,3129,2,Lbx1-201,-36648,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,15,50,16814,ENSMUSG00000025216,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23750,cg15771070,0.000028,0.0000193,1.454006993,0.146956025,gain,ns,0.0000911,0.0000328,2.780355938,0.005761938,pos,ns,0.021088746,0.009600942,2.19652879,0.028794249,pos,ns,1.540694251,-0.000368993,0.000330176,-1.117564787,0.264618267,neg,ns,0.406366349,Foxo6,Foxo6_Intron,4,120269715,120269764,120269715,120269716,50,-,CGCGGTGACTGATTAAGCCCTGTTTAGAACTAATTGCTCTTTCGTGTGTG,"Intron (Foxo6-201/Foxo6, intron 1 of 1)",4,120267079,120287349,20271,2,Foxo6-201,17585,Foxo6-201,Foxo6,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,14,42,329934,ENSMUSG00000052135,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
23485,cg02794451,-0.00000846,0.0000162,-0.520942357,0.602778833,loss,ns,0.0000767,0.0000276,2.780293175,0.005763024,pos,ns,0.010517316,0.008083883,1.301022718,0.194216863,pos,ns,0.711713065,-0.0000743,0.000278004,-0.267292071,0.789422027,neg,ns,0.133273186,Cacna1c,Cacna1c_threeUTR,6,118593805,118593854,118593805,118593806,50,-,CGAGAACAGTGAGGCACTTCTGAAACGAACCCATTAGGAACATTGAAACA,3' UTR,6,118587240,119196231,608992,2,Cacna1c-207,602377,Cacna1c-207;Cacna1c-223;Cacna1c-205;Cacna1c-215;Cacna1c-224;Cacna1c-225;Cacna1c-226;Cacna1c-227;Cacna1c-202;Cacna1c-201;Cacna1c-203;Cacna1c-212;Cacna1c-216;Cacna1c-210;Cacna1c-206;Cacna1c-208;Cacna1c-213;Cacna1c-217;Cacna1c-219;Cacna1c-220;Cacna1c-209;Cacna1c-204;Cacna1c-214;Cacna1c-222,Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,15,12288,ENSMUSG00000051331,conserved gene and region,6,118593662,118594144,483,*,483,34,0.619047619,0.741734417,0.070393375,6.89E-21,CpGisland,TRUE,U3,Pr-B
9935,cg21307980,0.0000162,0.0000031,5.241997459,0.000000294,gain,yes,-0.0000146,0.00000526,-2.780121302,0.005766,neg,ns,0.005177297,0.001541415,3.358794153,0.00088055,pos,ns,3.055245913,-0.000197956,0.000053,-3.734376173,0.000223897,neg,ns,0.070969751,Slc17a6,Slc17a6_Exon,7,51625462,51625511,51625510,51625511,50,+,AACCTGGGCGTGGCCATTGTGGACATGGTCAACAACAGCACCATCCACCG,"Exon (Slc17a6-201/Slc17a6, exon 2 of 12)",7,51622006,51671119,49114,1,Slc17a6-201,3456,Slc17a6-201;Slc17a6-203;Slc17a6-202;Slc17a6-204,Slc17a6;Slc17a6;Slc17a6;Slc17a6,0;0;0;-3969,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,4,140919,ENSMUSG00000030500,conserved gene and region,7,51625255,51625562,308,*,308,23,0.594155844,0.846153846,0.074675325,6.78E-15,CpGisland,TRUE,U13,Hc-P
19865,cg16272260,0.00000251,0.00000547,0.458948211,0.64659298,gain,ns,-0.0000258,0.00000929,-2.780109619,0.005766202,neg,ns,0.007591686,0.002720663,2.790380807,0.005590794,pos,ns,2.252526473,-0.000408777,0.0000936,-4.368987227,0.000017,neg,ns,0.914679131,Stard10,Stard10_threeUTR,7,101344000,101344049,101344000,101344001,50,-,CGTCATCACCTACCTGGCCCAGGTGGACCCCAAAGGTGAGGGCTTGGCCC,3' UTR,7,101317086,101346626,29541,1,Stard10-202,26914,Arap1-204;Stard10-202;Stard10-203;Stard10-201;Stard10-211;Stard10-205;Stard10-210;Stard10-204;Stard10-206;Stard10-207;Stard10-208;Stard10-209,Arap1;Stard10;Stard10;Stard10;Stard10;Stard10;Stard10;Stard10;Stard10;Stard10;Stard10;Stard10,-4018;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,5,6,56018,ENSMUSG00000030688,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17094,cg02209224,0.0000011,0.0000113,0.097851836,0.922113183,gain,ns,0.0000533,0.0000192,2.778999394,0.005785458,pos,ns,0.002012779,0.005613764,0.358543578,0.720180609,pos,ns,0.142558576,0.000231302,0.000193057,1.198104667,0.231791462,pos,ns,0.289554849,Zdhhc25,Zdhhc25_Intron,15,88360864,88360913,88360864,88360865,50,+,CGGAGCTGCACTAATTTGCAAGCTAAAACAATATTAGCAAATTGTTAATG,"Intron (B230214G05Rik-201/B230214G05Rik-201, intron 1 of 2)",15,88600302,88601669,1368,1,Zdhhc25-201,-239389,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,70073,ENSMUSG00000054117,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
915,cg06343950,0.00000282,0.00000504,0.559435683,0.576268369,gain,ns,0.0000238,0.00000856,2.778832075,0.005788365,pos,ns,0.000818249,0.002507647,0.326301638,0.744416323,pos,ns,0.128184112,0.000142486,0.0000862,1.652240916,0.099497902,pos,ns,0.073168304,Gdf6,Gdf6_Intron,4,9847204,9847253,9847252,9847253,50,-,TGATTTTGATTTGATGTGTCACCGGCGGTGACCTCAGGCTGGACCTTCCG,"Intron (Gdf6-201/Gdf6, intron 1 of 1)",4,9844372,9862345,17974,1,Gdf6-201,2832,Gdf6-201,Gdf6,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,11,242316,ENSMUSG00000051279,conserved gene and region,4,9847226,9847435,210,*,210,17,0.580952381,0.959419511,0.080952381,1.02E-11,CpGisland,TRUE,NA,NRS
15223,cg14773150,-0.00000071,0.00000522,-0.136114226,0.891819329,loss,ns,-0.0000246,0.00000886,-2.778807212,0.005788797,neg,ns,-0.004617511,0.002596997,-1.77801908,0.076380869,neg,ns,1.117015406,0.0000574,0.0000893,0.642383247,0.521099154,pos,ns,0.834503255,Dnal4,Dnal4_Exon,15,79763518,79763567,79763566,79763567,50,+,TGTTGGAGAATTTCTCACAGGCTGTGACACATAGCTCCATGGTCTCCACG,"Exon (Dnal4-202/Dnal4, exon 3 of 5)",15,79761453,79774383,12931,2,Dnal4-202,10816,Dnal4-202;Dnal4-201;Dnal4-206;Dnal4-204;Dnal4-205,Dnal4;Dnal4;Dnal4;Dnal4;Dnal4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,54152,ENSMUSG00000022420,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6238,cg06794958,-0.0000266,0.0000108,-2.465005405,0.014242881,loss,ns,0.000051,0.0000184,2.778451723,0.005794978,pos,ns,-0.004976375,0.005380162,-0.924948952,0.355711905,neg,ns,0.448901599,0.000126451,0.000185023,0.683434487,0.494842819,pos,ns,0.614401944,Tenm2,Tenm2_Intron,11,36508302,36508351,36508302,36508303,50,-,CGATGTGACTGGGTAAATGAAGAGAAGGCAGTAACTGGAAAAGCAAAGAC,"Intron (Tenm2-202/Tenm2, intron 4 of 30)",11,36006656,37235882,1229227,2,Tenm2-202,727531,Tenm2-202;Tenm2-208;Tenm2-201;Tenm2-204;Tenm2-205,Tenm2;Tenm2;Tenm2;Tenm2;Tenm2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,47,84,23964,ENSMUSG00000049336,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17302,cg24309602,0.0000411,0.0000112,3.665106512,0.000290761,gain,ns,0.0000529,0.000019,2.777676801,0.005808473,pos,ns,0.014183277,0.005575323,2.543938028,0.011446219,pos,ns,1.941337955,-0.000257388,0.000191735,-1.34241555,0.18044352,neg,ns,0.288184487,Kcnn3,Kcnn3_Exon,3,89521252,89521301,89521252,89521253,50,+,CGGAAAAACCAAAACATTGGCTATAAGCTGGGACACAGGAGGGCCCTGTT,"Exon (Kcnn3-201/Kcnn3, exon 1 of 8)",3,89520164,89667761,147598,1,Kcnn3-201,1088,Kcnn3-201,Kcnn3,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,140493,ENSMUSG00000000794,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
19797,cg16323590,0.000000874,0.00000327,0.267334309,0.789389539,gain,ns,0.0000154,0.00000555,2.777611071,0.005809619,pos,ns,0.000440348,0.001626438,0.270743678,0.786768356,pos,ns,0.104153116,-0.0000297,0.0000559,-0.531405951,0.595518057,neg,ns,0.936805339,Msl2,Msl2_threeUTR,9,101102244,101102293,101102244,101102245,50,+,CGGAGCTCCTGCATATAGATCACTTGTATCAAGTGTTTTCATTGCTAAGT,3' UTR,9,101074762,101104800,30039,1,Msl2-201,27482,Msl2-202;Msl2-201;Ppp2r3a-202;Ppp2r3a-201,Msl2;Msl2;Ppp2r3a;Ppp2r3a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,19,77853,ENSMUSG00000066415,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26132,cg11082332,0.00000575,0.00000555,1.036860158,0.300609132,gain,ns,-0.0000262,0.00000943,-2.777505507,0.005811459,neg,ns,-0.010267148,0.002761682,-3.717715997,0.000238507,neg,ns,3.622499427,0.00034184,0.000095,3.599300761,0.000371331,pos,ns,0.809097598,Lmo4,Lmo4_Intergenic_downstream,3,144174110,144174159,144174110,144174111,50,+,CGTTTGGCGTCTGATTGAAGGTCCAGCGCAGCTAATTAATTTCATTAGGA,Distal Intergenic,3,144189062,144194818,5757,2,Lmo4-206,20659,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,54,16911,ENSMUSG00000028266,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18338,cg27570602,-0.00000402,0.00000226,-1.780692925,0.075941838,loss,ns,-0.0000106,0.00000383,-2.777433937,0.005812708,neg,ns,-0.000924362,0.001122421,-0.823542791,0.410832502,neg,ns,0.386335206,0.0000229,0.0000386,0.593661619,0.553171377,pos,ns,0.929687225,Tbca,Tbca_Intron,13,94817623,94817672,94817623,94817624,50,-,CGCAGCTAATGAGCATGCAGCTGGATTGCAAATGGCTGGATTTATAGTGT,"Intron (Tbca-201/Tbca, intron 1 of 3)",13,94788910,94842922,54013,1,Tbca-201,28713,Tbca-201;Tbca-203;Tbca-204,Tbca;Tbca;Tbca,0;0;-62,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,9,21371,ENSMUSG00000042043,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13200,cg23235203,-0.0000237,0.0000138,-1.716356739,0.087095736,loss,ns,0.000065,0.0000234,2.776376356,0.005831183,pos,ns,0.032142385,0.006862337,4.683882825,0.00000422,pos,ns,5.374924232,-0.001561728,0.000235995,-6.617625859,1.60E-10,neg,yes,0.730479322,Gm7627,Gm7627_Intergenic_upstream,7,69739928,69739977,69739928,69739929,50,-,CGGGAAAAGTCAATGGATAAGACATTAGAGGCCAACCTCAAAGTCAGAAT,Distal Intergenic,7,69605842,69606840,999,2,Gm7627-201,-133137,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,11,665410,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2120,cg21122960,-0.0000193,0.00000678,-2.85234358,0.004631419,loss,ns,0.000032,0.0000115,2.775541353,0.005845807,pos,ns,0.006812605,0.003376126,2.017876664,0.044465318,pos,ns,1.351978597,0.0000907,0.000116105,0.781135836,0.435318722,pos,ns,0.157593488,Bhlhe22,Bhlhe22_Promoter,3,18051918,18051967,18051966,18051967,50,-,CAGTGTTAAGTGCCTGACAACTTCCCAGAAGCAATCAGCAAAAGTTTACG,Promoter (2-3kb),3,18054174,18057517,3344,1,Bhlhe22-201,-2256,Bhlhe22-201,Bhlhe22,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,6,22,59058,ENSMUSG00000025128,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
7809,cg20975401,-0.00000429,0.00000185,-2.321228854,0.020922729,loss,ns,0.00000872,0.00000314,2.775236091,0.005851162,pos,ns,0.002737355,0.000920204,2.974726651,0.003162912,pos,ns,2.499912843,-0.000107569,0.0000316,-3.399169343,0.000764292,neg,ns,0.958465043,Arhgap15,Arhgap15_threeUTR,2,44395780,44395829,44395780,44395781,50,+,CGTAAAATTAAAGATGACAGACGCTCAAAACAAGTCTTGTGATCTTGATT,3' UTR,2,43748824,44395953,647130,1,Arhgap15-203,646956,Arhgap15-203,Arhgap15,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,78,76117,ENSMUSG00000049744,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2087,cg21186416,0.0000613,0.00000743,8.255312863,4.42E-15,gain,yes,-0.000035,0.0000126,-2.77517835,0.005852176,neg,ns,0.030146513,0.003698205,8.151661542,8.97E-15,pos,yes,14.0472477,-0.000665813,0.000127181,-5.235159401,0.000000305,neg,yes,0.771923478,Thrb,Thrb_Exon,14,18033460,18033509,18033508,18033509,50,+,AAGTACCAAGATAGTTTCCTGCTGGCCTTTGAACACTATATCAATTACCG,"Exon (Thrb-203/Thrb, exon 10 of 10)",14,17660896,18033792,372897,1,Thrb-203,372564,Thrb-203;Thrb-201;Thrb-202,Thrb;Thrb;Thrb,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,21834,ENSMUSG00000021779,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4333,cg02980324,0.0000014,0.00000323,0.43319253,0.665176162,gain,ns,-0.0000152,0.00000549,-2.775166844,0.005852378,neg,ns,-0.005601342,0.001608992,-3.481273031,0.000570679,neg,ns,3.24360788,0.000130603,0.0000553,2.360309822,0.018878778,pos,ns,0.857385902,Samd4b,Samd4b_threeUTR,7,28405967,28406016,28406015,28406016,50,+,CACTTTTCGATGAGCTGGAGGTAACTGGTGATGTTCTCCTCGTCTGGTCG,3' UTR,7,28399522,28436191,36670,2,Samd4b-204,30175,Samd4b-204;Samd4b-201;Samd4b-203;Samd4b-202;Samd4b-205,Samd4b;Samd4b;Samd4b;Samd4b;Samd4b,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,9,11,233033,ENSMUSG00000109336,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
469,cg05740896,0.0000169,0.0000117,1.442511638,0.150167672,gain,ns,-0.0000551,0.0000198,-2.774961735,0.005855979,neg,ns,0.049189213,0.005814181,8.460214169,1.07E-15,pos,yes,14.97037968,-0.001385027,0.000199949,-6.926896005,2.49E-11,neg,yes,0.82416314,Slc25a13,Slc25a13_Intron,6,6145423,6145472,6145471,6145472,50,-,TACTACTATCTTTCAAAATTGAAGCCATTATGGTCAATCGTGCAAATCCG,"Intron (Slc25a13-201/Slc25a13, intron 4 of 17)",6,6041218,6217118,175901,2,Slc25a13-201,71646,Slc25a13-201;Slc25a13-203;Slc25a13-205;Slc25a13-202,Slc25a13;Slc25a13;Slc25a13;Slc25a13,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,3,50799,ENSMUSG00000015112,conserved gene and region,6,6145461,6145651,191,*,191,11,0.544502618,0.779591837,0.057591623,0.000003,CpGisland,TRUE,NA,NRS
23169,cg20205799,0.0000453,0.00000884,5.131366536,0.000000508,gain,yes,-0.0000417,0.000015,-2.774442401,0.005865105,neg,ns,-0.007305015,0.004398445,-1.660817677,0.097761092,neg,ns,1.009833955,0.0000755,0.000151262,0.498922394,0.618187906,pos,ns,0.783595273,Rnf220,Rnf220_Intron,4,117380050,117380099,117380050,117380051,50,+,CGAGGGGCCTGGACTGTTTGCTCTGCCATTTCATATCATGCTAACAAGCT,"Intron (Rnf220-201/Rnf220, intron 2 of 14)",4,117271463,117497052,225590,2,Rnf220-201,116953,Rnf220-201;Rnf220-202;Rnf220-207,Rnf220;Rnf220;Rnf220,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17492,cg23623146,-0.00000709,0.00000291,-2.440102247,0.015243091,loss,ns,-0.0000137,0.00000494,-2.774403767,0.005865785,neg,ns,-0.001520771,0.001446076,-1.05165342,0.293777664,neg,ns,0.531981228,-0.0000181,0.0000497,-0.364626151,0.715639098,neg,ns,0.9343362,Chtop,Chtop_Exon,3,90502229,90502278,90502229,90502230,50,-,CGTCCACCTCGGAGCAGGTTTTGACCTTAGAGAGGAGGCATACAATGTAT,"Exon (Chtop-201/Chtop, exon 4 of 5)",3,90498956,90509450,10495,2,Chtop-205,7172,Chtop-205;Chtop-201;Chtop-206;Chtop-203;Chtop-202;Chtop-207;Chtop-204;Chtop-209;Chtop-208,Chtop;Chtop;Chtop;Chtop;Chtop;Chtop;Chtop;Chtop;Chtop,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,10,66511,ENSMUSG00000001017,conserved gene but different region,3,90502125,90502239,115,*,115,10,0.643478261,1.033243486,0.086956522,0.000000242,CpGisland,TRUE,U10,Tr-S
25387,cg07870985,-0.0000107,0.0000149,-0.718373511,0.473068084,loss,ns,0.0000702,0.0000253,2.773939635,0.005873953,pos,ns,0.002871157,0.007416038,0.387155153,0.698907001,pos,ns,0.155580609,-0.00037735,0.000255037,-1.479588716,0.139998516,neg,ns,0.246931671,Tceal8,Tceal8_fiveUTR,X,136172183,136172232,136172231,136172232,50,-,AACAGGCCCTGGACTATAAGGACTTCTGCACACGTCGACTCCTGGTCACG,Promoter (<=1kb),20,136170885,136172216,1332,2,Tceal8-203,0,Tceal8-204;Tceal8-201;Tceal8-203;Tceal8-202,Tceal8;Tceal8;Tceal8;Tceal8,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,1,66684,ENSMUSG00000051579,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17843,cg20567881,-0.000000539,0.00000355,-0.152109707,0.879199356,loss,ns,-0.0000167,0.00000602,-2.773832199,0.005875846,neg,ns,0.000932947,0.001764622,0.528695115,0.597395278,pos,ns,0.223738214,-0.0000367,0.0000607,-0.605263776,0.545446571,neg,ns,0.935792465,G3bp2,G3bp2_Exon,5,92055443,92055492,92055491,92055492,50,+,TTGGAAGCTTTCCCCCAACACCCTTGGTATTGATGCGAAGTTCCACAACG,"Exon (G3bp2-203/G3bp2, exon 10 of 11)",5,92052146,92083557,31412,2,G3bp2-203,28065,G3bp2-203;G3bp2-201;G3bp2-202;G3bp2-204;G3bp2-209;G3bp2-210;G3bp2-206,G3bp2;G3bp2;G3bp2;G3bp2;G3bp2;G3bp2;G3bp2,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,5,23881,ENSMUSG00000029405,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7741,cg03301294,0.00000247,0.0000076,0.324908688,0.745469335,gain,ns,-0.0000358,0.0000129,-2.773234804,0.005886378,neg,ns,0.008664589,0.003780549,2.291886481,0.022582272,pos,ns,1.646232363,-0.000157712,0.000130013,-1.213051628,0.226033609,neg,ns,0.823479167,Clta,Clta_Exon,4,44032462,44032511,44032462,44032463,50,-,CGGGTGGCCCGGCTGTGTGACTTTAACCCCAAGTCTAGCAAGCAGGCCAA,"Exon (Clta-202/Clta, exon 6 of 6)",4,44004452,44032846,28395,1,Clta-202,28010,Clta-202;Clta-203;Clta-206;Clta-204;Clta-205;Clta-201;Gne-201;Gne-214;Gne-202;Gne-208;Gne-209,Clta;Clta;Clta;Clta;Clta;Clta;Gne;Gne;Gne;Gne;Gne,0;0;0;0;0;0;51666;22786;40267;34409;34449,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,6,12757,ENSMUSG00000028478,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25674,cg22018180,0.0000175,0.0000136,1.289660267,0.198129958,gain,ns,0.000064,0.0000231,2.772848781,0.005893193,pos,ns,0.029210595,0.006766803,4.316749429,0.0000213,pos,ns,4.671015107,-0.0004622,0.00023271,-1.986163074,0.047895632,neg,ns,0.345648764,Map11,Map11_fiveUTR,5,138263108,138263157,138263108,138263109,50,+,CGGTGAGTGGGAAGATGACCTCATCTGTGGACACAATCGGTTCCTCCACA,Promoter (<=1kb),5,138262253,138263138,886,2,Map11-206,0,Gal3st4-203;Gal3st4-201;Gal3st4-202;Gal3st4-205;Gm43720-201;Lamtor4-201;Lamtor4-202;Map11-201;Map11-205;Map11-202;Map11-204;Map11-203;Map11-207;Map11-206,Gal3st4;Gal3st4;Gal3st4;Gal3st4;Gm43720;Lamtor4;Lamtor4;Map11;Map11;Map11;Map11;Map11;Map11;Map11,0;0;0;0;0;7626;7277;0;0;0;0;-2163;-914;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,1,231807,ENSMUSG00000036948,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20915,cg23865846,0.000154349,0.0000175,8.835206723,7.59E-17,gain,yes,-0.0000823,0.0000297,-2.771423863,0.005918409,neg,ns,0.009602963,0.008694865,1.104440757,0.270258491,pos,ns,0.568220652,0.000220828,0.000299016,0.738516892,0.460759148,pos,ns,0.353089855,Pax6,Pax6_Intron,2,105688359,105688408,105688407,105688408,50,+,GCTGAAAAGGTGCCGCAACCGGGTTGCTATCTTTTCTTGCTTGTTTTCCG,"Intron (Pax6-206/Pax6, intron 7 of 12)",2,105668900,105697364,28465,1,Pax6-206,19459,Pax6-206;Pax6-207;Pax6-210;Pax6-214;Pax6-208;Pax6-202;Pax6-205;Pax6-225;Pax6-204;Pax6-201;Pax6-203;Pax6-224;Pax6-219;Pax6-221;Pax6-213;Pax6-211;Pax6-222;Pax6-212;Pax6-215;Pax6-223;Pax6-209;Pax6-216;Pax6-218,Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;-4075,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,78,18508,ENSMUSG00000027168,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
27253,cg02206196,-0.0000241,0.00000997,-2.416455469,0.016249853,loss,ns,0.0000469,0.0000169,2.770144821,0.005941128,pos,ns,-0.005085929,0.004961872,-1.025002034,0.306161386,neg,ns,0.514049585,0.000375081,0.000170638,2.198102754,0.028680779,pos,ns,0.693479512,Nhs,Nhs_Promoter,X,162167250,162167299,162167250,162167251,50,+,CGAATTAGAACTCCCCATTAGTTTGATTAATCACTGATGTAAGTGCAGGC,Promoter (7-8kb),20,161833296,162159730,326435,2,Nhs-202,-7520,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,12,195727,ENSMUSG00000059493,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3054,cg13251691,0.0000396,0.00000674,5.875370335,1.09E-08,gain,yes,0.0000317,0.0000115,2.770143949,0.005941143,pos,ns,0.016794149,0.003354716,5.006130539,0.000000933,pos,ns,6.030022243,-0.000384375,0.000115368,-3.331718501,0.000967524,neg,ns,0.256016849,Pou3f2,Pou3f2_Exon,4,22487166,22487215,22487214,22487215,50,-,GTTCTTGAAGCTCAGCTGCAGGGCCTCAAACCTGCAGATGGTGGTCTGCG,"Exon (Pou3f2-201/Pou3f2, exon 1 of 1)",4,22482780,22488366,5587,2,Pou3f2-201,1151,Pou3f2-201,Pou3f2,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,18,18992,ENSMUSG00000095139,conserved gene and region,4,22487214,22487678,465,*,465,41,0.67311828,0.801387138,0.088172043,4.43E-29,CpGisland,TRUE,NA,NRS
20012,cg24843649,0.00000679,0.00000332,2.044703256,0.041728443,gain,ns,-0.0000156,0.00000564,-2.769696197,0.005949115,neg,ns,-0.004046136,0.00165339,-2.447174937,0.014952889,neg,ns,1.825274877,-0.000067,0.0000569,-1.178060665,0.239675966,neg,ns,0.907479093,Lsm12,Lsm12_Exon,11,102167086,102167135,102167086,102167087,50,+,CGTCTTGTGAATGGTCTGGAAGAGCTGCTGGCCCTCTAGAGAGACACCAG,"Exon (Lsm12-202/Lsm12, exon 2 of 4)",11,102162497,102185229,22733,2,Lsm12-202,18094,Lsm12-202;Lsm12-201;Lsm12-204;Lsm12-203;Lsm12-205,Lsm12;Lsm12;Lsm12;Lsm12;Lsm12,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,268490,ENSMUSG00000020922,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26027,cg01029859,0.0000299,0.00000439,6.807629164,5.14E-11,gain,yes,-0.0000207,0.00000746,-2.769454901,0.005953415,neg,ns,0.001864658,0.002186665,0.852740661,0.394461487,pos,ns,0.403995393,-0.0000977,0.0000752,-1.2993869,0.194776681,neg,ns,0.891180887,Etnk1,Etnk1_Intron,6,143192905,143192954,143192953,143192954,50,-,TCTTAAACGCACTGACTGGAGGTTTATCGCATCACTTGTTCACATGCACG,"Intron (Etnk1-203/Etnk1, intron 4 of 7)",6,143167221,143218497,51277,1,Etnk1-203,25684,Etnk1-203;Etnk1-201;Etnk1-202;Etnk1-204,Etnk1;Etnk1;Etnk1;Etnk1,0;0;25651;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,10,75320,ENSMUSG00000030275,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
6421,cg03376252,-0.00000408,0.0000089,-0.458576283,0.646859798,loss,ns,0.0000419,0.0000151,2.768745108,0.00596608,pos,ns,0.008120964,0.004429133,1.833533364,0.06768194,pos,ns,1.169527202,-0.000146867,0.000152318,-0.96421328,0.335690557,neg,ns,0.778410988,Gm37013,Gm37013_threeUTR,18,37185466,37185515,37185514,37185515,50,-,TTGTTTTCAGAACCTAAAAAGCAGACCCAAGTTTCCTTTCTCCTCCGCCG,3' UTR,18,36969916,37833296,863381,1,Gm37013-201,215550,Gm37013-201;Gm37388-201;Gm42416-201;Pcdha1-202;Pcdha1-201;Pcdha11-201;Pcdha11-202;Pcdha11-203;Pcdha11-204;Pcdha12-201;Pcdha2-201;Pcdha2-202;Pcdha3-201;Pcdha4-202;Pcdha4-201;Pcdha5-201;Pcdha6-202;Pcdha6-201;Pcdha6-203;Pcdha7-201;Pcdha8-201;Pcdha9-201;Pcdhac1-201;Pcdhac2-201,Gm37013;Gm37388;Gm42416;Pcdha1;Pcdha1;Pcdha11;Pcdha11;Pcdha11;Pcdha11;Pcdha12;Pcdha2;Pcdha2;Pcdha3;Pcdha4;Pcdha4;Pcdha5;Pcdha6;Pcdha6;Pcdha6;Pcdha7;Pcdha8;Pcdha9;Pcdhac1;Pcdhac2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,TRUE,FALSE,threeUTR,3,14,100384868,ENSMUSG00000103458,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16090,cg01567668,-0.00000552,0.00000189,-2.927257587,0.003672669,loss,ns,-0.00000887,0.0000032,-2.7686672,0.005967472,neg,ns,-0.000302999,0.000938726,-0.32277704,0.747081698,neg,ns,0.126631903,-0.0000619,0.0000323,-1.916679736,0.05619782,neg,ns,0.953742459,Acaca,Acaca_Intron,11,84376642,84376691,84376642,84376643,50,-,CGAACCGGCAATGACCCACAACAGGGAGACATCAAGCGTGAAATTTACTA,"Intron (Acaca-202/Acaca, intron 50 of 55)",11,84173122,84401651,228530,1,Acaca-202,203520,Acaca-202;Acaca-201,Acaca;Acaca,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,28,28,107476,ENSMUSG00000020532,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19696,cg15238085,-0.00000249,0.00000313,-0.794035427,0.427782206,loss,ns,0.0000147,0.00000532,2.768566963,0.005969263,pos,ns,-0.00048224,0.001559762,-0.309175501,0.757395724,neg,ns,0.120677151,0.0000216,0.0000536,0.403016069,0.687214205,pos,ns,0.930306223,Galnt6,Galnt6_Exon,15,100699176,100699225,100699176,100699177,50,-,CGATGTGCTCAAAGTAGGACTTGGAGATGGAGAAGAGGCCACCAGCAAAC,"Exon (Galnt6-202/Galnt6, exon 7 of 12)",15,100691813,100729376,37564,2,Galnt6-202,30151,Galnt6-202;Galnt6-201;Galnt6-203,Galnt6;Galnt6;Galnt6,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,207839,ENSMUSG00000037280,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2855,cg17615850,0.000126868,0.0000127,9.961426361,1.84E-20,gain,yes,-0.0000599,0.0000216,-2.768322435,0.005973634,neg,ns,0.016135044,0.006338821,2.545433087,0.011398342,pos,ns,1.943158307,-0.000519183,0.000217992,-2.381664206,0.01783781,neg,ns,0.496891775,Zfp503,Zfp503_Promoter,14,21991349,21991398,21991349,21991350,50,-,CGCTCAATTAAAAGCCTATCAGTTTGTAAGTAAATCAACGCCTATCAGAG,Promoter (1-2kb),14,21983959,21989601,5643,2,Zfp503-201,-1797,Zfp503-201,Zfp503,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,18,27,218820,ENSMUSG00000039081,mapped to different genes,14,21991208,21991513,306,*,306,17,0.513071895,0.84502924,0.055555556,3.96E-09,CpGisland,TRUE,NA,NRS
4810,cg01785567,0.0000327,0.00000519,6.298070165,1.03E-09,gain,yes,-0.0000244,0.00000881,-2.768312851,0.005973805,neg,ns,-0.004832125,0.002581739,-1.871655381,0.062195872,neg,ns,1.206238438,0.000143048,0.0000888,1.611163468,0.108161759,pos,ns,0.851294066,Cep41,Cep41_Intron,6,30669528,30669577,30669528,30669529,50,+,CGAGTTACTGGAAGGACAGAGACCTGACTATCTAGGATGTTTCACACTGG,"Intron (Cep41-201/Cep41, intron 3 of 10)",6,30653457,30693749,40293,2,Cep41-201,24172,Cep41-201;Cep41-206;Cep41-203;Cep41-204;Cep41-207;Cep41-210;Cep41-205,Cep41;Cep41;Cep41;Cep41;Cep41;Cep41;Cep41,0;0;0;-173;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,83922,ENSMUSG00000029790,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27383,cg13973505,-0.00000442,0.00000184,-2.398126834,0.017070137,loss,ns,-0.00000867,0.00000313,-2.767474625,0.005988811,neg,ns,0.00469938,0.000917425,5.122357693,0.000000531,pos,ns,6.27466563,-0.0000976,0.0000316,-3.09304032,0.00216147,neg,ns,0.964161221,Pou2f1,Pou2f1_Exon,1,165902192,165902241,165902240,165902241,50,-,TCAAGCTCCTCAAGGTCACTGGGCTCCTCCAAGCTGGGAGTATCAATTCG,"Exon (Pou2f1-205/Pou2f1, exon 9 of 17)",1,165865154,165934948,69795,2,Pou2f1-205,32707,Pou2f1-205;Pou2f1-208;Pou2f1-207;Pou2f1-206;Pou2f1-216;Pou2f1-209;Pou2f1-204;Pou2f1-201;Pou2f1-202;Pou2f1-213;Pou2f1-203;Pou2f1-215,Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,18,18986,ENSMUSG00000026565,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21008,cg26030946,0.0000354,0.0000254,1.395502679,0.163863097,gain,ns,0.000119238,0.0000431,2.767413907,0.005989899,pos,ns,0.026035758,0.012622898,2.062581718,0.039985149,pos,ns,1.398101281,-0.000554052,0.0004341,-1.27632132,0.20279731,neg,ns,0.578590707,Dcdc5,Dcdc5_Exon,2,106042214,106042263,106042262,106042263,50,+,CTGGTGTTGTGCAATGGTTTTTGACTGATAATCAATCTTTATGCTGCTCG,"Exon (Dcdc5-203/Dcdc5, exon 4 of 9)",2,106003336,106157718,154383,1,Dcdc5-203,38878,Dcdc5-203;Dcdc5-202,Dcdc5;Dcdc5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,22,329482,ENSMUSG00000074981,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4138,cg09671306,0.00000865,0.00000507,1.704457351,0.089297628,gain,ns,-0.0000238,0.00000862,-2.766460708,0.006007007,neg,ns,-0.000663732,0.002525221,-0.262841042,0.792847698,neg,ns,0.100810231,-0.00024296,0.0000868,-2.797716089,0.005468502,neg,ns,0.715680701,Syngap1,Syngap1_threeUTR,17,26959510,26959559,26959558,26959559,50,-,CCCCCTCAGCATGTTCCCTGGAAGCTGAGGGTCTCTGGGGCTCAGTCCCG,3' UTR,17,26941253,26972434,31182,1,Syngap1-204,18257,Syngap1-204;Syngap1-213;Syngap1-208;Syngap1-202;Syngap1-207;Syngap1-203;Syngap1-201;Syngap1-212;Syngap1-214;Syngap1-211;Syngap1-205;Syngap1-206;Syngap1-209;Syngap1-210,Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1,0;0;0;0;0;0;0;0;0;0;-279;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,18,240057,ENSMUSG00000067629,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3615,cg07922477,0.0000283,0.0000138,2.053977218,0.040816251,gain,ns,0.0000648,0.0000234,2.765647107,0.006021645,pos,ns,0.020907451,0.006869195,3.043653529,0.002537393,pos,ns,2.595612243,-0.000645634,0.000236231,-2.733062853,0.006635088,neg,ns,0.517386202,Gm12067,Gm12067_Intergenic_upstream,11,24783471,24783520,24783471,24783472,50,+,CGTTGTCTGACAGCTACAGTTTTGGCCAGAGGGCCGTGGCAGGCTTTAGA,Distal Intergenic,11,24552438,24553962,1525,2,Gm12067-201,-229509,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,26,58,100417843,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24955,cg00334236,0.0000187,0.00000305,6.123813577,2.76E-09,gain,yes,-0.0000143,0.00000519,-2.764959141,0.006034047,neg,ns,-0.002006529,0.001520397,-1.319740143,0.187895562,neg,ns,0.726083478,-0.0000129,0.0000523,-0.246685759,0.805314704,neg,ns,0.829760467,Fgfr2,Fgfr2_Exon,7,130198495,130198544,130198543,130198544,50,-,GTCCTCAAAAGTTACATTCCGAATATAGAGAACCTCAATCTCTTTGTCCG,"Exon (Fgfr2-207/Fgfr2, exon 6 of 16)",7,130162451,130266263,103813,2,Fgfr2-211,67719,Fgfr2-211;Fgfr2-217;Fgfr2-207;Fgfr2-226;Fgfr2-215;Fgfr2-201;Fgfr2-202;Fgfr2-203;Fgfr2-204;Fgfr2-205;Fgfr2-206;Fgfr2-208;Fgfr2-209;Fgfr2-210;Fgfr2-212;Fgfr2-213;Fgfr2-214;Fgfr2-216;Fgfr2-222;Fgfr2-225;Fgfr2-218,Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,79,14183,ENSMUSG00000030849,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7112,cg21426641,-0.00000484,0.00000547,-0.884419986,0.377154964,loss,ns,0.0000257,0.0000093,2.764759815,0.006037645,pos,ns,0.007733833,0.002723954,2.839193738,0.004821511,pos,ns,2.316816796,-0.000246008,0.0000937,-2.62614137,0.009064623,neg,ns,0.906886318,Zfpm2,Zfpm2_Intron,15,41040626,41040675,41040674,41040675,50,+,AAATTACAGTAATCTAGGGAGGTCTGACTAAGCTACTGGAGCAATGGGCG,"Intron (Zfpm2-201/Zfpm2, intron 5 of 7)",15,40655035,41104592,449558,1,Zfpm2-201,385591,Zfpm2-201;Zfpm2-203,Zfpm2;Zfpm2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,41,22762,ENSMUSG00000022306,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5677,cg02894112,-0.0000216,0.0000219,-0.987582718,0.324127236,loss,ns,-0.000102924,0.0000372,-2.764663272,0.006039388,neg,ns,0.086896255,0.010906703,7.967234195,3.12E-14,pos,yes,13.50562257,-0.002022015,0.000375081,-5.39088179,0.000000139,neg,yes,0.481953637,Mapkap1,Mapkap1_Intron,2,34535256,34535305,34535256,34535257,50,+,CGTTTCGGCTTTTGCCAGCTGACTGCGCCGTTTGATAACCAGCTCTCTGG,"Intron (Mapkap1-204/Mapkap1, intron 6 of 10)",2,34406862,34623475,216614,1,Mapkap1-204,128394,Mapkap1-204;Mapkap1-202;Mapkap1-201;Mapkap1-209;Mapkap1-203;Mapkap1-207,Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,59,227743,ENSMUSG00000038696,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25362,cg24924222,-0.00000496,0.00000205,-2.419582393,0.01611344,loss,ns,-0.00000963,0.00000348,-2.764498172,0.006042371,neg,ns,-0.002712793,0.001020508,-2.658276787,0.008261651,neg,ns,2.082933173,0.0000123,0.0000351,0.350298788,0.726352369,pos,ns,0.956446397,Plcb4,Plcb4_Exon,2,135968343,135968392,135968343,135968344,50,+,CGCATTTACCCCAAGGGAGGCCGAGTCGATTCCAGTAATTACATGCCTCA,"Exon (Plcb4-206/Plcb4, exon 23 of 29)",2,135659711,135983013,323303,1,Plcb4-206,308632,Plcb4-206;Plcb4-215;Plcb4-202;Plcb4-201,Plcb4;Plcb4;Plcb4;Plcb4,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,18798,ENSMUSG00000039943,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21095,cg00056596,0.00000513,0.00000973,0.52709736,0.59850297,gain,ns,0.0000457,0.0000165,2.764256302,0.006046742,pos,ns,0.012973981,0.00484365,2.678554854,0.007788462,pos,ns,2.108548307,-0.00042496,0.000166573,-2.551195809,0.011215468,neg,ns,0.491169721,Barhl2,Barhl2_Intergenic_downstream,5,106443482,106443531,106443482,106443483,50,+,CGTGATAATGAGTAGGTTGAGGGAAGGAAAGGTGTTATCTCATTAAGGTA,Distal Intergenic,5,106452523,106458166,5644,2,Barhl2-201,14635,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,27,104382,ENSMUSG00000034384,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2905,cg20386369,0.0000111,0.0000069,1.602527654,0.110057383,gain,ns,0.0000324,0.0000117,2.763910798,0.006052991,pos,ns,0.006901651,0.003432304,2.010792535,0.045212949,pos,ns,1.344737167,-0.0000922,0.000118037,-0.78146649,0.435124583,neg,ns,0.909511638,Lrmda,Lrmda_Intron,14,22037623,22037672,22037623,22037624,50,+,CGTGCTCAATGACAATAAATATAGTAATTATACTGGAGTTAGTAATTAAC,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,17911,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206,Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9220,cg09135713,0.0000175,0.000013,1.349050251,0.17830537,gain,ns,-0.0000608,0.000022,-2.763586042,0.006058871,neg,ns,0.048787206,0.00644671,7.567768621,4.37E-13,pos,yes,12.35968879,-0.000921271,0.000221702,-4.155451074,0.000042,neg,ns,0.709973328,Gm20517,Gm20517_threeUTR,17,47678882,47678931,47678930,47678931,50,-,AGTGAAGCTAGAAAGCAGTTAATGATCTACAGACTACCTCAGGTTCTCCG,3' UTR,17,47611613,47683861,72249,1,Gm20517-202,67269,Gm20517-202;Usp49-201;Usp49-204;Usp49-202,Gm20517;Usp49;Usp49;Usp49,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,6,112694759,ENSMUSG00000023984,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1797,cg01019608,-0.00000685,0.0000114,-0.60023939,0.548785235,loss,ns,0.0000536,0.0000194,2.763321038,0.006063672,pos,ns,0.006979182,0.005681701,1.228361272,0.220243128,pos,ns,0.657097633,0.000133114,0.000195393,0.681259772,0.496215719,pos,ns,0.755440413,Gm5513,Gm5513_Intergenic_upstream,19,15340828,15340877,15340876,15340877,50,-,GCCATCCAGCTGGCATCTATAATGGATATCCTGGGGGCTGTGAGAACACG,Distal Intergenic,19,14959549,14960766,1218,2,Gm5513-201,-380111,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,22,433225,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8134,cg16989060,-0.0000946,0.0000209,-4.533026036,0.00000832,loss,ns,0.000098,0.0000355,2.763281325,0.006064392,pos,ns,0.046253196,0.010386517,4.45319612,0.0000118,pos,ns,4.927274908,-0.002333503,0.000357191,-6.532918901,2.64E-10,neg,yes,0.527335001,Pax2,Pax2_Intron,19,44778489,44778538,44778537,44778538,50,+,AATTTATGTGACTCGCACGAGTCAGGAGGTCAAACAACTGTTATGGAGCG,"Intron (Pax2-203/Pax2, intron 3 of 9)",19,44756045,44837851,81807,1,Pax2-203,22444,Pax2-203;Pax2-201;Pax2-202,Pax2;Pax2;Pax2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,35,166,18504,ENSMUSG00000004231,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3052,cg06113157,0.0000393,0.00000267,14.74302826,1.21E-37,gain,yes,-0.0000125,0.00000453,-2.763231137,0.006065302,neg,ns,0.002987298,0.001327807,2.249797908,0.025163016,pos,ns,1.599237305,-0.0000217,0.0000457,-0.474891394,0.635198773,neg,ns,0.042822166,Pou3f2,Pou3f2_Exon,4,22487005,22487054,22487053,22487054,50,+,AGGAAATGGCTCTCCAGAGCCCCCTTGACGCTCACCTCGATGGAGGTCCG,"Exon (Pou3f2-201/Pou3f2, exon 1 of 1)",4,22482780,22488366,5587,2,Pou3f2-201,1312,Pou3f2-201,Pou3f2,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,18,18992,ENSMUSG00000095139,conserved gene and region,4,22487033,22487110,78,*,78,8,0.628205128,1.04,0.102564103,0.00000181,CpGisland,TRUE,U13,Hc-P
15365,cg15237513,-0.0000236,0.0000156,-1.509228743,0.132258853,loss,ns,0.0000733,0.0000266,2.76164872,0.006094051,pos,ns,0.003900175,0.007779314,0.501352004,0.616479242,pos,ns,0.210081542,0.0000194,0.00026753,0.072699744,0.942091935,pos,ns,0.452744066,Gm46388,Gm46388_Intergenic_downstream,13,80515189,80515238,80515189,80515190,50,-,CGCTAGAGAGCAGAAGTGCTTTTGTAAAATGACCCAGAGCAAAAACAAAA,Distal Intergenic,13,80493009,80493484,476,1,Gm46388-201,22229,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,11,108168047,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21148,cg25858695,0.0000173,0.00000845,2.04795662,0.041406485,gain,ns,0.0000397,0.0000144,2.761099131,0.006104065,pos,ns,0.023734132,0.004208104,5.64010043,3.83E-08,pos,ns,7.416851206,-0.000683088,0.000144716,-4.720183796,0.00000357,neg,ns,0.126210092,Gm17304,Gm17304_Intron,5,106561023,106561072,106561071,106561072,50,+,ATAAAGTACAAGAAAACTGTCTGGCTGCCTGCGTCTGATTGATCCTGCCG,"Intron (Gm28050-202/Gm28050-202, intron 1 of 2)",5,106609098,106609201,104,1,Gm17304-201,-48026,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,35,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
3448,cg23194329,0.0000281,0.00000801,3.507637144,0.000518965,gain,ns,0.0000376,0.0000136,2.76103171,0.006105295,pos,ns,0.013051716,0.00398857,3.272279783,0.001187227,pos,ns,2.925466254,-0.000107105,0.000137167,-0.780839902,0.435492519,neg,ns,0.350945739,Bcl11a,Bcl11a_Exon,11,24086305,24086354,24086305,24086306,50,+,CGGCTGCTCCCTGCAGCCTGCCTCCTCAGCTAAATGATAAATGCTTCTCT,"Exon (Bcl11a-205/Bcl11a, exon 2 of 2)",11,24078056,24173194,95139,1,Bcl11a-201,8249,Bcl11a-201;Bcl11a-203;Bcl11a-205;Bcl11a-202;Bcl11a-204,Bcl11a;Bcl11a;Bcl11a;Bcl11a;Bcl11a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,51,98,14025,ENSMUSG00000000861,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18682,cg17356452,0.0000303,0.0000141,2.152341103,0.032142175,gain,ns,0.0000659,0.0000239,2.760693131,0.006111472,pos,ns,0.015264983,0.006996164,2.181907566,0.029867009,pos,ns,1.52480826,-0.000458269,0.000240598,-1.90471047,0.057743081,neg,ns,0.648723459,Zbtb38,Zbtb38_Intron,9,96732056,96732105,96732104,96732105,50,+,ATATGGCATACAGAGCATTTACATACTCACATCTGAAATACTAGGCAACG,"Intron (Zbtb38-212/Zbtb38, intron 3 of 5)",9,96682770,96752831,70062,2,Zbtb38-212,20726,Zbtb38-212;Zbtb38-201;Zbtb38-210;Zbtb38-211;Zbtb38-205;Zbtb38-207;Zbtb38-202,Zbtb38;Zbtb38;Zbtb38;Zbtb38;Zbtb38;Zbtb38;Zbtb38,0;0;-3020;-715;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,2,245007,ENSMUSG00000040433,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20171,cg26191916,-0.0000079,0.00000618,-1.27874925,0.201941829,loss,ns,0.000029,0.0000105,2.760577877,0.006113576,pos,ns,0.010152392,0.003074347,3.302291893,0.001071076,pos,ns,2.970179662,-0.000305809,0.000105727,-2.892454825,0.004092939,neg,ns,0.880438595,Gm49473,Gm49473_Promoter,15,102803734,102803783,102803782,102803783,50,+,TCCAACAGGCTGCATAATTTTTATGACCAATTATTCCATTTGTAATGACG,Promoter (8-9kb),15,102795121,102795371,251,2,Gm49473-201,-8363,NA,NA,NA,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,1,12,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9274,cg14917766,-0.000000477,0.00000164,-0.28995477,0.772044689,loss,ns,-0.00000771,0.00000279,-2.760450126,0.006115909,neg,ns,0.000935969,0.000818199,1.143938089,0.253531857,pos,ns,0.595967462,-0.0000422,0.0000281,-1.4980579,0.135135753,neg,ns,0.960229547,Foxp4,Foxp4_Intron,17,47872629,47872678,47872677,47872678,50,-,TTTTCCCTCATTTCGAAGCCTGATTCGTGATGAGAGACTAATTCGTTACG,"Intron (Foxp4-204/Foxp4, intron 13 of 16)",17,47867133,47924645,57513,2,Foxp4-204,51967,Foxp4-204;Foxp4-203;Foxp4-201;Foxp4-202,Foxp4;Foxp4;Foxp4;Foxp4,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,25,74123,ENSMUSG00000023991,conserved gene and region,17,47872440,47872721,282,*,282,26,0.563829787,1.163809524,0.092198582,3.73E-19,CpGisland,TRUE,U10,Tr-S
6614,cg23871832,0.0000587,0.00000505,11.6305066,3.44E-26,gain,yes,-0.0000237,0.00000857,-2.760134426,0.006121679,neg,ns,0.001018784,0.002511903,0.405582421,0.685329226,pos,ns,0.164100747,0.0000469,0.0000864,0.542949209,0.58755493,pos,ns,0.124594858,Msx1,Msx1_Promoter,5,37828879,37828928,37828927,37828928,50,+,TATAGATAATATATCCCATTTCAAAGCAATTAGACCAATCAGGCGTAACG,Promoter (4-5kb),5,37820485,37824583,4099,2,Msx1-201,-4296,Msx1-201;Msx1-202,Msx1;Msx1,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,8,14,17701,ENSMUSG00000048450,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
425,cg14208700,0.0000901,0.00000618,14.58005199,4.98E-37,gain,yes,-0.000029,0.0000105,-2.75913002,0.006140066,neg,ns,-0.002876583,0.003074155,-0.935731133,0.350139989,neg,ns,0.455758287,0.0001327,0.00010572,1.255199703,0.210351642,pos,ns,0.813221613,Pcnx3,Pcnx3_Exon,19,5681561,5681610,5681609,5681610,50,-,TCGTGCAGGGAGTCCTGGTCCAGCAGGTCAAACTGCAGTCCCCACAGCCG,"Exon (Pcnx3-204/Pcnx3, exon 2 of 7)",19,5664635,5688908,24274,2,Pcnx3-202,7298,Pcnx3-202;Pcnx3-201;Pcnx3-210;Pcnx3-208;Pcnx3-204;Pcnx3-209;Pcnx3-212;Pcnx3-207,Pcnx3;Pcnx3;Pcnx3;Pcnx3;Pcnx3;Pcnx3;Pcnx3;Pcnx3,0;0;0;-1984;0;0;0;7085,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,7,104401,ENSMUSG00000054874,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3704,cg16045489,0.0000179,0.0000103,1.732119248,0.084247019,gain,ns,0.0000483,0.0000175,2.758974896,0.00614291,pos,ns,0.009560187,0.00513177,1.862941468,0.063416138,pos,ns,1.197800212,0.000173257,0.000176481,0.981732414,0.326997246,pos,ns,0.751553646,Pou2f2,Pou2f2_Exon,7,25096946,25096995,25096994,25096995,50,-,TGCAGGGGTTGATGCGTTTCTCCTTCTGGCGCCGGTTGCAGAACCAGACG,"Exon (Pou2f2-203/Pou2f2, exon 11 of 14)",7,25087344,25132488,45145,2,Pou2f2-203,35493,Pou2f2-203;Pou2f2-209;Pou2f2-201;Pou2f2-206;Pou2f2-204;Pou2f2-205;Pou2f2-202;Pou2f2-210;Pou2f2-207,Pou2f2;Pou2f2;Pou2f2;Pou2f2;Pou2f2;Pou2f2;Pou2f2;Pou2f2;Pou2f2,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,29,18987,ENSMUSG00000008496,conserved gene but different region,7,25096911,25097031,121,*,121,9,0.636363636,0.734817814,0.074380165,0.00000449,CpGisland,TRUE,NA,NRS
4045,cg05808663,-0.0000308,0.00000794,-3.873824617,0.00013074,loss,ns,0.0000372,0.0000135,2.758544126,0.006150814,pos,ns,-0.001916605,0.003953811,-0.484748906,0.628196809,neg,ns,0.201904274,-0.000221313,0.000135971,-1.627642575,0.104616597,neg,ns,0.661073362,Gm45647,Gm45647_Exon,8,26637827,26637876,26637875,26637876,50,-,ATTTAAAATATGATTACAGTGTTTTGAAGCACATCTCACCTGTCCCCTCG,"Exon (Gm45584-201/Gm45584-201, exon 1 of 3)",8,26780315,26780509,195,1,Gm45647-201,-142488,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,62,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3831,cg26480565,0.00000457,0.00000971,0.470671316,0.638206468,gain,ns,0.0000455,0.0000165,2.758456457,0.006152424,pos,ns,-0.002401017,0.004834895,-0.496601716,0.619821901,neg,ns,0.207733083,-0.0000555,0.000166272,-0.333706187,0.738826893,neg,ns,0.682103573,Adgrb3,Adgrb3_Exon,1,25553724,25553773,25553772,25553773,50,-,GCTGCAGTGTGTCCCGTAAGGTGATACACAAGTTCTGGTTCGCACCTGCG,"Exon (Adgrb3-206/Adgrb3, exon 3 of 29)",1,25067550,25826139,758590,2,Adgrb3-206,272366,Adgrb3-206;Adgrb3-205;Adgrb3-207;Adgrb3-201;Adgrb3-210,Adgrb3;Adgrb3;Adgrb3;Adgrb3;Adgrb3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,14,25,210933,ENSMUSG00000033569,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9731,cg26081366,0.00000475,0.00000934,0.509010429,0.611107009,gain,ns,-0.0000437,0.0000159,-2.757873007,0.006163148,neg,ns,-0.009554688,0.004647135,-2.056038718,0.040615804,neg,ns,1.391304949,0.00028881,0.000159815,1.807157648,0.07170708,pos,ns,0.105743704,Hnrnph1,Hnrnph1_Exon,11,50381421,50381470,50381469,50381470,50,-,TTGCCCCCCTACTGGGGTTATTTGTCCTTGGGTTGAAGGGTTGGAAATCG,"Exon (Hnrnph1-203/Hnrnph1, exon 6 of 15)",11,50376990,50386528,9539,1,Hnrnph1-203,4431,Hnrnph1-203;Hnrnph1-201;Hnrnph1-205;Hnrnph1-206;Hnrnph1-215;Hnrnph1-204;Hnrnph1-202;Hnrnph1-207;Hnrnph1-208;Hnrnph1-210;Hnrnph1-211;Hnrnph1-213;Hnrnph1-209;Hnrnph1-218;Hnrnph1-216;Hnrnph1-214;Hnrnph1-212;Hnrnph1-217,Hnrnph1;Hnrnph1;Hnrnph1;Hnrnph1;Hnrnph1;Hnrnph1;Hnrnph1;Hnrnph1;Hnrnph1;Hnrnph1;Hnrnph1;Hnrnph1;Hnrnph1;Hnrnph1;Hnrnph1;Hnrnph1;Hnrnph1;Hnrnph1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;-2342;-2361;-3493,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,59013,ENSMUSG00000007850,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
1608,cg11148085,0.0000402,0.0000103,3.915330317,0.000111055,gain,ns,0.0000481,0.0000174,2.757521121,0.006169623,pos,ns,0.014503884,0.005108269,2.839295114,0.004820019,pos,ns,2.316951227,-0.000198362,0.000175673,-1.129152219,0.259706631,neg,ns,0.39185501,Cask,Cask_Intron,X,13845295,13845344,13845343,13845344,50,+,TTCTATATTCTAGACCAGCCCGGTGACTCAAAGCAGACGGCTCTACCACG,"Intron (Cask-203/Cask, intron 1 of 24)",20,13517080,13846541,329462,2,Cask-203,1197,Cask-203;Cask-204;Cask-201;Cask-210;Cask-205;Cask-208;Cask-211,Cask;Cask;Cask;Cask;Cask;Cask;Cask,0;0;0;0;0;0;1391,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,9,12361,ENSMUSG00000031012,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6731,cg06423192,-0.0000647,0.00000982,-6.584925993,1.95E-10,loss,yes,0.000046,0.0000167,2.757198784,0.00617556,pos,ns,0.00536179,0.004886543,1.097256435,0.273380887,pos,ns,0.563231852,-0.000266283,0.000168048,-1.584567541,0.114084184,neg,ns,0.459025439,Pcdh1,Pcdh1_Promoter,18,38215118,38215167,38215166,38215167,50,-,TCTCTCGGCTGCACTTTCGCTCACTCATTAATTTTGGTATTTTTCTCACG,Promoter (3-4kb),18,38185914,38212053,26140,2,Pcdh1-203,-3114,Pcdh1-203;Pcdh1-202;Pcdh1-205,Pcdh1;Pcdh1;Pcdh1,0;-3148;-4564,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,3,17,75599,ENSMUSG00000051375,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8655,cg14002601,-0.00000212,0.00000476,-0.444090639,0.657286889,loss,ns,0.0000223,0.00000809,2.756981399,0.006179567,pos,ns,0.007195373,0.002371463,3.034149386,0.002616296,pos,ns,2.582313129,-0.000130675,0.0000816,-1.602301365,0.110107408,neg,ns,0.913914303,Btrc,Btrc_Intron,19,45493877,45493926,45493925,45493926,50,+,GCCTGGAGTCTTTTAAATATAAGTAACACGCAACCAGTAATAAGCTGTCG,"Intron (Btrc-204/Btrc, intron 1 of 2)",19,45363734,45507736,144003,1,Btrc-204,130143,Btrc-204;Btrc-201;Btrc-210;Btrc-202;Btrc-203;Btrc-209,Btrc;Btrc;Btrc;Btrc;Btrc;Btrc,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,63,98,12234,ENSMUSG00000025217,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18929,cg23649536,-0.0000355,0.0000135,-2.640573365,0.008695725,loss,ns,0.000063,0.0000229,2.755927309,0.00619903,pos,ns,0.024664531,0.006699107,3.681763846,0.000273151,pos,ns,3.563597303,-0.000732663,0.000230382,-3.180211733,0.001620533,neg,ns,0.625163623,Dach1,Dach1_Intron,14,97960598,97960647,97960598,97960599,50,+,CGCTATTAGGTGCTTTCAAGCTTGCTGTGCAGACATTAAATAATAACATA,"Intron (Dach1-201/Dach1, intron 3 of 10)",14,97786853,98169543,382691,2,Dach1-201,208896,Dach1-201;Dach1-202;Dach1-203,Dach1;Dach1;Dach1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,76,13134,ENSMUSG00000055639,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2787,cg06535652,-0.0000104,0.00000499,-2.089799853,0.037450527,loss,ns,0.0000234,0.00000848,2.755650181,0.006204157,pos,ns,0.004812896,0.002483792,1.937720859,0.053565247,pos,ns,1.271116889,-0.000167019,0.0000854,-1.955324239,0.051443025,neg,ns,0.909435137,Kcnd2,Kcnd2_Exon,6,21727166,21727215,21727166,21727167,50,+,CGATCCAGTTTAAATGCCAAAATGGAAGAGTGTGTTAAACTAAACTGTGA,"Exon (Kcnd2-201/Kcnd2, exon 6 of 6)",6,21215503,21729805,514303,1,Kcnd2-201,511663,Kcnd2-201,Kcnd2,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,16508,ENSMUSG00000060882,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
274,cg09599996,0.0000218,0.0000104,2.090547075,0.037382927,gain,ns,0.0000488,0.0000177,2.755489141,0.006207137,pos,ns,0.007795357,0.005186732,1.502941817,0.133872044,pos,ns,0.873310106,0.0000733,0.000178371,0.411064068,0.68130957,pos,ns,0.238164026,Npas4,Npas4_threeUTR,19,4984603,4984652,4984651,4984652,50,-,AGAGTCCATCGGAATTGAAATCCCGTTACTGGTGTGTAGAGAATTCTACG,3' UTR,19,4984355,4989971,5617,2,Npas4-202,5319,Npas4-202;Npas4-201;Npas4-203,Npas4;Npas4;Npas4,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,14,16,225872,ENSMUSG00000045903,conserved gene and region,19,4984402,4984672,271,*,271,24,0.63099631,0.889740082,0.088560886,2.74E-17,CpGisland,TRUE,U13,Hc-P
16065,cg26976533,0.00000806,0.00000294,2.743384043,0.006434927,gain,ns,-0.0000138,0.00000499,-2.755343617,0.006209832,neg,ns,0.000838116,0.001462693,0.572995311,0.567063249,pos,ns,0.246368498,0.000015,0.0000503,0.297804684,0.766051723,pos,ns,0.048998932,Gm26927,Gm26927_Promoter,13,84347882,84347931,84347930,84347931,50,+,TGGGGCAGAGCCAGTTGACTGGATCACAGGGTTTCTCTGCACTTTCTGCG,Promoter (7-8kb),13,84339149,84340113,965,2,Gm26927-201,-7769,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,3,102631850,NA,mapped to different genes,13,84347930,84348062,133,*,133,12,0.601503759,1.02901354,0.090225564,6.19E-09,CpGisland,TRUE,U3,Pr-B
20783,cg13116439,-0.00000218,0.0000135,-0.162005635,0.871406958,loss,ns,0.0000631,0.0000229,2.755143352,0.006213542,pos,ns,0.021306732,0.00671222,3.174319856,0.001652723,pos,ns,2.781799825,-0.000779352,0.000230833,-3.376265394,0.000828355,neg,ns,0.779629899,Tlk2,Tlk2_Exon,11,105210559,105210608,105210559,105210560,50,-,CGCGCCAGGAACCAGCCCTGGCAGAAGTGTTCCACCAGTTGCACGATCCT,"Exon (Tlk2-204/Tlk2, exon 6 of 22)",11,105178807,105283959,105153,1,Tlk2-203,31752,Tlk2-203;Tlk2-206;Tlk2-204;Tlk2-202;Tlk2-201;Tlk2-209;Tlk2-207;Tlk2-211;Tlk2-205;Tlk2-212,Tlk2;Tlk2;Tlk2;Tlk2;Tlk2;Tlk2;Tlk2;Tlk2;Tlk2;Tlk2,0;29813;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,Exon,4,5,24086,ENSMUSG00000020694,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27189,cg12302541,0.0000943,0.0000125,7.551251733,4.86E-13,gain,yes,-0.0000585,0.0000212,-2.754352011,0.006228221,neg,ns,0.009526117,0.006218484,1.53190337,0.126566118,pos,ns,0.89768254,-0.000544845,0.000213853,-2.547755066,0.011324339,neg,ns,0.059849309,Mafb,Mafb_Exon,2,160365923,160365972,160365923,160365924,50,-,CGTAGCCCCGGTTCTTCAGGGTCCGCCGCTTCTGCTTCAGGCGGATCACC,"Exon (Mafb-201/Mafb, exon 1 of 1)",2,160363703,160367065,3363,2,Mafb-201,1093,Mafb-201,Mafb,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,14,22,16658,ENSMUSG00000074622,conserved gene and region,2,160365864,160367635,1772,*,1772,185,0.687358917,0.886994873,0.104401806,2.50E-143,CpGisland,TRUE,U3,Pr-B
12929,cg07887668,0.00000253,0.00000515,0.491027561,0.62375438,gain,ns,-0.0000241,0.00000875,-2.754215878,0.006230749,neg,ns,-0.003502929,0.002563428,-1.366501947,0.172771778,neg,ns,0.762527198,0.0000295,0.0000882,0.33511276,0.737766677,pos,ns,0.856585097,Ntn1,Ntn1_Intron,11,68290787,68290836,68290835,68290836,50,+,TCTTCCTTTATTGTGCAGTAAATTTCCCTCCAGAGTTCGGATTTCATGCG,"Intron (Ntn1-201/Ntn1, intron 2 of 6)",11,68209364,68386826,177463,2,Ntn1-201,95990,Ntn1-201;Ntn1-202,Ntn1;Ntn1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,6,18208,ENSMUSG00000020902,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20063,cg08158748,0.0000146,0.00000949,1.536035189,0.125549733,gain,ns,-0.0000444,0.0000161,-2.753858433,0.006237392,neg,ns,0.010176999,0.004722954,2.154795196,0.03194781,pos,ns,1.495558907,-0.000769649,0.000162422,-4.738578786,0.00000328,neg,ns,0.697250509,Rundc3a,Rundc3a_Exon,11,102401993,102402042,102401993,102401994,50,+,CGCCCTCCATGCTGGGCCTCTGCGGCTCCCTGGCCTCCATTCCCAGCTGC,"Exon (Rundc3a-201/Rundc3a, exon 11 of 11)",11,102393403,102402555,9153,1,Rundc3a-201,8590,Rundc3a-202;Rundc3a-203;Rundc3a-204;Rundc3a-201;Rundc3a-209;Rundc3a-205;Rundc3a-210;Rundc3a-208;Rundc3a-206;Rundc3a-207;Slc25a39-202;Slc25a39-201;Slc25a39-205;Slc25a39-213;Slc25a39-207;Slc25a39-208;Slc25a39-215;Slc25a39-209;Slc25a39-203;Slc25a39-212;Slc25a39-206;Slc25a39-214;Slc25a39-204;Slc25a39-210;Slc25a39-211,Rundc3a;Rundc3a;Rundc3a;Rundc3a;Rundc3a;Rundc3a;Rundc3a;Rundc3a;Rundc3a;Rundc3a;Slc25a39;Slc25a39;Slc25a39;Slc25a39;Slc25a39;Slc25a39;Slc25a39;Slc25a39;Slc25a39;Slc25a39;Slc25a39;Slc25a39;Slc25a39;Slc25a39;Slc25a39,0;0;0;0;0;0;0;0;0;2135;5447;5502;2451;5464;5466;5414;4774;5445;5421;5273;4913;5341;5904;4766;4842,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,6,51799,ENSMUSG00000006575,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24246,cg20503006,0.00003,0.0000156,1.917859866,0.056047354,gain,ns,0.0000732,0.0000266,2.753724476,0.006239883,pos,ns,0.009327542,0.00778857,1.19759362,0.23199016,pos,ns,0.634530435,-0.00000177,0.000267848,-0.006589809,0.99474637,neg,ns,0.671293282,Gm12902,Gm12902_Intergenic_downstream,4,124198994,124199043,124198994,124198995,50,-,CGCTGTGAATGTTAAGAACTGCCAGTACTGGAAGCTGAGATCCCATCCAT,Distal Intergenic,4,123926234,123926555,322,1,Gm12902-201,272809,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,34,34,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2779,cg21785710,0.00000462,0.00000592,0.780915785,0.435447951,gain,ns,0.0000277,0.0000101,2.753242156,0.006248861,pos,ns,0.007386459,0.002945501,2.507708803,0.012662571,pos,ns,1.897478091,-0.000212129,0.000101296,-2.094163232,0.037057253,neg,ns,0.857166704,Wdpcp,Wdpcp_Intron,11,21694108,21694157,21694156,21694157,50,-,CAATTTGGATGAGCCTGATTATTTACTAAATACAATACATAAATGCAACG,"Intron (Wdpcp-201/Wdpcp, intron 8 of 17)",11,21572235,21898989,326755,1,Wdpcp-201,121873,Wdpcp-201;Wdpcp-205;Wdpcp-204;Wdpcp-206,Wdpcp;Wdpcp;Wdpcp;Wdpcp,0;0;0;-972,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,7,216560,ENSMUSG00000020319,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26659,cg06438063,0.00000957,0.00000362,2.642357435,0.008651071,gain,ns,-0.0000169,0.00000616,-2.753209801,0.006249463,neg,ns,-0.00417373,0.001803246,-2.314564211,0.021289993,neg,ns,1.671824482,0.000102378,0.000062,1.650905858,0.099770465,pos,ns,0.911650518,Bicd1,Bicd1_threeUTR,6,149520507,149520556,149520507,149520508,50,+,CGGCTCAGCAAGGAAAAAAGGTTAACCGTGGCTCCACCAGGTAAACATTT,3' UTR,6,149408984,149563329,154346,1,Bicd1-202,111523,Bicd1-202;Bicd1-203;Bicd1-201;Bicd1-207;Bicd1-208;Bicd1-206,Bicd1;Bicd1;Bicd1;Bicd1;Bicd1;Bicd1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,6,12121,ENSMUSG00000003452,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10583,cg19084627,-0.0000161,0.00000225,-7.177835785,5.26E-12,loss,yes,0.0000105,0.00000382,2.752284237,0.006266725,pos,ns,-0.000272446,0.001118056,-0.243678309,0.807641153,neg,ns,0.09278156,-0.0000131,0.0000384,-0.341612371,0.732874074,neg,ns,0.949854815,Gm5821,Gm5821_Intergenic_upstream,18,54580848,54580897,54580848,54580849,50,-,CGTTGTCCTTGCCAAAGGGGTAGTTGAATAATTGCATGCGATTATTGCAC,Distal Intergenic,18,54766132,54766380,249,1,Gm5821-201,-185284,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,4,545257,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16919,cg23738105,-0.00000605,0.0000043,-1.405124626,0.16098552,loss,ns,0.0000201,0.00000731,2.752188406,0.006268515,pos,ns,0.005446188,0.002141563,2.543089903,0.011473458,pos,ns,1.940305664,-0.00013529,0.0000736,-1.836975738,0.067170659,neg,ns,0.92319237,Ascl1,Ascl1_Intergenic_downstream,10,87389153,87389202,87389201,87389202,50,+,GCCAGACAGTTCAATGAACAGGATAATCGGGGTAGTTTTTGACAGGTGCG,Distal Intergenic,10,87490819,87493660,2842,2,Ascl1-201,104458,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,11,11,17172,ENSMUSG00000020052,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15260,cg23086084,-0.00000894,0.00000758,-1.17937903,0.239151608,loss,ns,0.0000354,0.0000129,2.75204852,0.006271128,pos,ns,0.020366566,0.003772712,5.398388541,0.000000134,pos,ns,6.873088483,-0.000589142,0.000129743,-4.540825877,0.00000803,neg,ns,0.841911634,Hnrnpll,Hnrnpll_threeUTR,17,80044513,80044562,80044513,80044514,50,-,CGAAGAAGGGTGTTCTCCCAAAATGGCTTGTCTCTGGCGACCCTTTCCTC,3' UTR,17,80029487,80062227,32741,2,Hnrnpll-205,17665,Hnrnpll-205;Hnrnpll-201;Hnrnpll-203;Hnrnpll-204;Hnrnpll-207,Hnrnpll;Hnrnpll;Hnrnpll;Hnrnpll;Hnrnpll,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,6,72692,ENSMUSG00000024095,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7935,cg00598724,-0.0000446,0.0000114,-3.909195435,0.000113776,loss,ns,0.0000534,0.0000194,2.752022713,0.00627161,pos,ns,0.001543112,0.005680616,0.271645143,0.786075699,pos,ns,0.10453563,-0.0000552,0.000195356,-0.282580716,0.777686846,neg,ns,0.836839689,Hif1an,Hif1an_Intron,19,44641509,44641558,44641557,44641558,50,-,ATTTACATCCTTATTTTTCAATTTGCTGCCACAGTAGTTTAATTTATTCG,"Intron (Gm35460-201/Gm35460-201, intron 5 of 6)",19,44562850,44563952,1103,1,Hif1an-202,78708,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,31,319594,ENSMUSG00000036450,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8114,cg21317803,0.0000248,0.0000129,1.92616176,0.054998365,gain,ns,0.0000602,0.0000219,2.75175284,0.006276655,pos,ns,0.015039211,0.006407906,2.346977346,0.019555442,pos,ns,1.708732363,-0.0000487,0.000220367,-0.220913469,0.82530524,neg,ns,0.289702857,Pax2,Pax2_Promoter,19,44753617,44753666,44753617,44753618,50,-,CGGCTAATGAAGCAAATCCCGAGATGGGTATCAGAGCAACTCCCCAAAAG,Promoter (2-3kb),19,44756045,44837851,81807,1,Pax2-203,-2428,Pax2-203;Pax2-201,Pax2;Pax2,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,5,166,18504,ENSMUSG00000004231,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
17666,cg20386712,-0.00000355,0.000000966,-3.679850311,0.000275122,loss,ns,0.00000451,0.00000164,2.750960585,0.006291486,pos,ns,0.000355273,0.000480723,0.739040007,0.460441905,pos,ns,0.336825158,-0.00000481,0.0000165,-0.290981124,0.77126034,neg,ns,0.033663273,Ssbp2,Ssbp2_Exon,13,91370869,91370918,91370869,91370870,50,+,CGATTAAATACTCGTGGAAGGTGAACGTACCCCACACAGGAGAAGTTTGA,"Exon (A830009L08Rik-201/A830009L08Rik-201, exon 3 of 3)",13,91460283,91688866,228584,1,Ssbp2-209,-89365,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,18,66970,ENSMUSG00000003992,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
4995,cg06110766,-0.0000134,0.00000942,-1.42560555,0.154988359,loss,ns,0.000044,0.000016,2.750724389,0.006295914,pos,ns,0.005546536,0.004687593,1.183237664,0.237621572,pos,ns,0.624114136,-0.000246839,0.000161206,-1.531203761,0.12673885,neg,ns,0.77053819,Podxl,Podxl_Exon,6,31719711,31719760,31719759,31719760,50,-,AAAACAAAAATCCCTGCCGTTAGATTTTCATAGCCTAATTATTCAGCACG,"Exon (Gm43154-207/Gm43154-207, exon 7 of 7)",6,31519488,31563981,44494,2,Podxl-201,-155779,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,3,27205,ENSMUSG00000025608,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19905,cg08310277,-0.0000233,0.0000095,-2.448696281,0.01489111,loss,ns,0.0000444,0.0000161,2.750618817,0.006297894,pos,ns,0.006814249,0.004728862,1.44099125,0.150596445,pos,ns,0.822185279,-0.000112724,0.000162625,-0.693150665,0.488733982,neg,ns,0.411040313,Ogt,Ogt_Exon,X,101642978,101643027,101643026,101643027,50,-,CCAACGAAACGTATGCTTTCCTTCCAAGGGTTAGCTGAGTTGGCACATCG,"Exon (Ogt-202/Ogt, exon 3 of 23)",20,101640060,101682940,42881,1,Ogt-202,2918,Ogt-202;Ogt-206;Ogt-201;Ogt-205;Ogt-204;Ogt-207,Ogt;Ogt;Ogt;Ogt;Ogt;Ogt,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,32,33,108155,ENSMUSG00000034160,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6958,cg22267456,-0.00000505,0.00000135,-3.733081831,0.000225002,loss,ns,0.00000632,0.0000023,2.75039538,0.006302086,pos,ns,-0.00058126,0.000673266,-0.863342748,0.388616499,neg,ns,0.410478765,0.0000174,0.0000232,0.753377382,0.451794953,pos,ns,0.968114087,Gm12133,Gm12133_Intron,11,40138213,40138262,40138261,40138262,50,-,ATCATATTCAAAATATTAATTTAGAGCAAAATTAAATCGGACACCCACCG,"Intron (Gm12132-201/Gm12132-201, intron 5 of 7)",11,40422694,40423354,661,2,Gm12133-201,285141,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,100416392,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5932,cg26169567,0.0000373,0.0000084,4.434720006,0.0000128,gain,ns,-0.0000393,0.0000143,-2.75032552,0.006303397,neg,ns,0.0000143,0.004182363,0.003419702,0.997273678,pos,ns,0.001185644,0.0000124,0.000143831,0.086534528,0.931097375,pos,ns,0.494357293,Gm5614,Gm5614_Intergenic_upstream,9,35344578,35344627,35344578,35344579,50,-,CGAGTGTTAGCAAAGCCTCTTGTGTATACAGTGGGAATAGTTAATCTTGT,Distal Intergenic,9,35281518,35281835,318,2,Gm5614-201,-62792,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,3,434394,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3879,cg04477010,-0.0000134,0.000004,-3.345595066,0.000921997,loss,ns,-0.0000187,0.00000679,-2.749833556,0.006312639,neg,ns,0.005609194,0.001989216,2.819801348,0.005114808,pos,ns,2.291170658,-0.0000647,0.0000684,-0.946047675,0.344861082,neg,ns,0.965673791,Nsd3,Nsd3_Exon,8,25676666,25676715,25676714,25676715,50,-,GGAGGCCTGATTGCGTTGTGTTTCCACCATTCCACAGGGTCGGCGGACCG,"Exon (Nsd3-211/Nsd3, exon 10 of 10)",8,25601601,25677214,75614,1,Nsd3-211,75065,Nsd3-211;Nsd3-203;Nsd3-208;Nsd3-204;Nsd3-206;Nsd3-201;Nsd3-205,Nsd3;Nsd3;Nsd3;Nsd3;Nsd3;Nsd3;Nsd3,0;74382;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,14,234135,ENSMUSG00000054823,conserved gene and region,8,25676544,25676764,221,*,221,19,0.601809955,0.956056466,0.085972851,1.56E-13,CpGisland,TRUE,U10,Tr-S
7864,cg11389618,-0.00000374,0.000003,-1.244643304,0.21420303,loss,ns,0.000014,0.0000051,2.749476337,0.006319356,pos,ns,0.005070705,0.001495477,3.390694606,0.000787437,pos,ns,3.103783973,-0.000130188,0.0000514,-2.531405146,0.011854668,neg,ns,0.947778968,Gtdc1,Gtdc1_Intron,2,44573631,44573680,44573631,44573632,50,+,CGGAGGAGAGTAAATAAAATGGAGTGATTAAAACATTGCTGCTTTAAGGG,"Intron (Gtdc1-203/Gtdc1, intron 8 of 10)",2,44564412,44861622,297211,2,Gtdc1-203,287942,Gtdc1-203;Gtdc1-201;Gtdc1-207;Gtdc1-208;Gtdc1-205,Gtdc1;Gtdc1;Gtdc1;Gtdc1;Gtdc1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,43,227835,ENSMUSG00000036890,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3198,cg23166004,0.00000448,0.00000512,0.875002045,0.382250209,gain,ns,0.0000239,0.00000869,2.749451165,0.00631983,pos,ns,0.006345287,0.002546724,2.491548724,0.013241266,pos,ns,1.878070504,-0.000172007,0.0000876,-1.963964667,0.050427506,neg,ns,0.860340414,Gm46443,Gm46443_Intergenic_upstream,14,23233338,23233387,23233338,23233339,50,-,CGATCCGCATCAGTTCCACCTGCATGCACCCACCAGGAACCACTTTATTG,Distal Intergenic,14,23321144,23321507,364,1,Gm46443-201,-87806,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,12,12,108168141,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2263,cg09409453,0.0000219,0.0000054,4.053643792,0.0000638,gain,ns,-0.0000252,0.00000918,-2.749217603,0.006324226,neg,ns,-0.001198526,0.002689408,-0.445646889,0.6561634,neg,ns,0.182987998,0.0000659,0.0000925,0.712138913,0.476914363,pos,ns,0.051048516,Meis1,Meis1_Intergenic_downstream,11,18878243,18878292,18878243,18878244,50,+,CGGAATTTCCAACGTGTAAAATGTTCTTAACGGAACCATTGAGCGAGTGC,Downstream (1-2kb),11,18880668,19012002,131335,2,Meis1-203,133710,Meis1-206;Meis1-202;Meis1-209;Meis1-201;Meis1-203;Meis1-208;Meis1-207,Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1,0;0;0;0;0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,17,88,17268,ENSMUSG00000020160,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
25406,cg21733082,0.0000121,0.00000311,3.883664982,0.000125794,gain,ns,-0.0000145,0.00000528,-2.748366095,0.006340277,neg,ns,-0.004400234,0.001545659,-2.846832706,0.004710238,neg,ns,2.326957165,0.0000842,0.0000532,1.583550807,0.114315585,pos,ns,0.946484087,Cux1,Cux1_threeUTR,5,136274533,136274582,136274581,136274582,50,+,GATTGGGCTTAATGCTCCTTTGTTTTCTATATGCACCTTGGCCTATGGCG,3' UTR,5,136248135,136360018,111884,2,Cux1-205,85436,Cux1-205;Cux1-207;Cux1-211;Cux1-203;Cux1-213;Cux1-201;Cux1-204;Cux1-209;Cux1-212;Cux1-206;Cux1-202,Cux1;Cux1;Cux1;Cux1;Cux1;Cux1;Cux1;Cux1;Cux1;Cux1;Cux1,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,8,21,13047,ENSMUSG00000029705,conserved gene and region,5,136274581,136275256,676,*,676,67,0.721893491,0.760800914,0.099112426,1.01E-50,CpGisland,TRUE,U10,Tr-S
12520,cg16471565,-0.00000277,0.0000159,-0.174067834,0.861925768,loss,ns,0.0000744,0.0000271,2.748176322,0.006343859,pos,ns,0.024066196,0.007933568,3.033464621,0.002622067,pos,ns,2.581356215,-0.000609798,0.000272835,-2.235046372,0.026126389,neg,ns,0.650666634,Gm13578,Gm13578_Intergenic_downstream,2,64853197,64853246,64853245,64853246,50,+,CCTATTTTCTTCAATTGCCTGGGGGTTTGTGTTCAGTACTTACAGAATCG,Distal Intergenic,2,64867999,64868588,590,2,Gm13578-201,15342,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,10,667291,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21069,cg26978528,-0.0000311,0.0000114,-2.715257863,0.006993643,loss,ns,0.0000534,0.0000194,2.747898296,0.00634911,pos,ns,0.014358014,0.005693936,2.521632361,0.012182125,pos,ns,1.914276966,-0.000559255,0.000195814,-2.856054114,0.004579028,neg,ns,0.743661362,Ddx42,Ddx42_Exon,11,106238538,106238587,106238586,106238587,50,+,GCTACCAATCTTCAAAGAGTCTCTTACCTTGTGTTTGATGAAGCAGATCG,"Exon (Ddx42-201/Ddx42, exon 11 of 18)",11,106216926,106249139,32214,1,Ddx42-201,21612,Ddx42-201;Ddx42-202,Ddx42;Ddx42,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,72047,ENSMUSG00000020705,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23612,cg05256005,0.0000133,0.0000103,1.285913252,0.199433007,gain,ns,0.0000481,0.0000175,2.747631855,0.006354146,pos,ns,0.014782491,0.005132522,2.880161261,0.004251576,pos,ns,2.371450091,-0.000172488,0.000176507,-0.977232585,0.329215997,neg,ns,0.162737169,Dll4,Dll4_Promoter,2,119322514,119322563,119322514,119322515,50,+,CGCCCCCACGGCTGCCAGGCTCTGCCAGTCCCACTGCCCCAGTTGGCACG,Promoter (3-4kb),2,119325784,119335962,10179,1,Dll4-201,-3221,Dll4-201,Dll4,0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,8,20,54485,ENSMUSG00000027314,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
21022,cg11678648,0.00000447,0.00000359,1.243795286,0.214514623,gain,ns,0.0000168,0.0000061,2.747125299,0.006363731,pos,ns,0.001493337,0.001788111,0.835147742,0.404277697,pos,ns,0.393320217,-0.000016,0.0000615,-0.260753011,0.794456111,neg,ns,0.933037222,Gm5987,Gm5987_Exon,5,106101800,106101849,106101848,106101849,50,+,AAATTTTCCTTAACTGGTCATGGCAGCAGAAAATACCCTGCTGTTAAACG,"Exon (Gm32736-201/Gm32736-201, exon 3 of 3)",5,106215651,106216801,1151,1,Gm5987-201,-113802,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,4,546882,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10707,cg02268254,0.0000177,0.00000517,3.431765795,0.000681055,gain,ns,0.0000241,0.00000879,2.746411233,0.006377265,pos,ns,0.00497625,0.002574036,1.933248056,0.054116033,pos,ns,1.26667405,-0.0000377,0.0000885,-0.425838774,0.670520831,neg,ns,0.732317025,Unc5a,Unc5a_Exon,13,54997163,54997212,54997211,54997212,50,+,CCTGACCCCAGTCCTTCTCTGTCCGGCCAGTGAACGGTGGGTGGTCGACG,"Exon (Unc5a-201/Unc5a, exon 6 of 16)",13,54949411,55006018,56608,1,Unc5a-201,47752,Unc5a-201;Unc5a-202;Unc5a-203,Unc5a;Unc5a;Unc5a,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,12,107448,ENSMUSG00000025876,conserved gene and region,13,54997158,54997472,315,*,315,22,0.676190476,0.63,0.06984127,1.18E-13,CpGisland,TRUE,U11,Tr-P
26698,cg11979881,-0.00000315,0.00000398,-0.790632874,0.429762682,loss,ns,0.0000186,0.00000676,2.746255356,0.006380222,pos,ns,-0.0000424,0.001980182,-0.021426596,0.982919143,neg,ns,0.007482207,0.0000344,0.0000681,0.505181888,0.61379005,pos,ns,0.954328856,Ivns1abp,Ivns1abp_Exon,1,151354664,151354713,151354712,151354713,50,-,TTGCCCAGCAATGGCAAATTATATACAAAGGTAATCAACTGGGTGCAGCG,"Exon (Ivns1abp-201/Ivns1abp, exon 7 of 15)",1,151344477,151364422,19946,1,Ivns1abp-201,10187,Ivns1abp-201;Ivns1abp-203;Ivns1abp-202;Ivns1abp-204,Ivns1abp;Ivns1abp;Ivns1abp;Ivns1abp,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,3,117198,ENSMUSG00000023150,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22328,cg10566267,-0.000025,0.0000102,-2.455417543,0.014620865,loss,ns,0.0000475,0.0000173,2.745981392,0.006385424,pos,ns,0.002883286,0.005068725,0.568838626,0.569877529,pos,ns,0.244218467,-0.000152074,0.000174313,-0.872417505,0.383655866,neg,ns,0.770111627,Gm7183,Gm7183_Intergenic_upstream,9,113248916,113248965,113248916,113248917,50,+,CGAGGTGTAAACTGCTTTCACATCTCATTTAGGAAACAGATGAGGCGTGA,Distal Intergenic,9,113530229,113531233,1005,1,Gm7183-201,-281264,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,636680,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23552,cg17528344,-0.0000206,0.0000107,-1.929375754,0.0545967,loss,ns,0.0000498,0.0000181,2.745865658,0.006387622,pos,ns,0.008018452,0.005317089,1.5080531,0.132559361,pos,ns,0.877589599,-0.000192168,0.000182854,-1.050935183,0.294106906,neg,ns,0.21671215,Sp8,Sp8_Promoter,12,118844041,118844090,118844089,118844090,50,+,TTAATTAACTTTTTGCTGTCCTGTAATGATCAAACTGGTCACCAGACCCG,Promoter (2-3kb),12,118846329,118852576,6248,1,Sp8-201,-2239,Sp8-201;Sp8-202,Sp8;Sp8,0;-3496,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,27,29,320145,ENSMUSG00000048562,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
18634,cg22206913,-0.0000328,0.000011,-2.993794346,0.002977058,loss,ns,0.0000511,0.0000186,2.745720919,0.006390373,pos,ns,0.007336608,0.00545263,1.345517124,0.179441613,pos,ns,0.746076836,-0.000312457,0.000187516,-1.666300445,0.096663635,neg,ns,0.605857305,Gm8637,Gm8637_Intron,8,96350846,96350895,96350894,96350895,50,+,TGTGCCAATATTCTCTTATCTAACTGGCCTTTCAAAATTGAATGCATTCG,"Intron (Gm32005-201/Gm32005-201, intron 1 of 4)",8,95921529,95922613,1085,1,Gm8637-201,429317,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,4,667445,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27135,cg22217897,0.0000283,0.00000621,4.551489865,0.00000766,gain,ns,0.000029,0.0000105,2.745539086,0.006393829,pos,ns,0.013416472,0.003090505,4.341190855,0.0000192,pos,ns,4.716449254,-0.000300068,0.000106282,-2.823317904,0.005060449,neg,ns,0.44762865,Dhx35,Dhx35_Intergenic_downstream,2,159069321,159069370,159069369,159069370,50,+,AGGCCCCCTCCTGCCTCTGCTTGTTTCCCTTGATTGTTATGTAATGTTCG,Distal Intergenic,2,158850629,158857368,6740,1,Dhx35-204,218692,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,14,14,71715,ENSMUSG00000027655,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24115,cg08056240,-0.00000293,0.00000932,-0.314364596,0.753455604,loss,ns,0.0000435,0.0000158,2.744871793,0.00640653,pos,ns,-0.006331767,0.004637906,-1.365221053,0.173173484,neg,ns,0.761518604,0.000300659,0.000159497,1.885041738,0.060359366,pos,ns,0.607026986,Cacng3,Cacng3_Exon,7,122671862,122671911,122671862,122671863,50,+,CGGACTACTGGTTATATTCCAGAGGTGTGTGCAGGACTAAATCTACAAGT,"Exon (Cacng3-201/Cacng3, exon 1 of 4)",7,122670492,122769393,98902,1,Cacng3-201,1370,Cacng3-201;Cacng3-203;Cacng3-202,Cacng3;Cacng3;Cacng3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,54376,ENSMUSG00000066189,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7471,cg07227780,-0.00000497,0.0000107,-0.465572769,0.64184825,loss,ns,0.0000498,0.0000182,2.74473986,0.006409043,pos,ns,0.000685263,0.005317856,0.128860747,0.897551399,pos,ns,0.046940672,-0.000149537,0.000182881,-0.817674962,0.41417082,neg,ns,0.599258084,Tenm1,Tenm1_Exon,X,42725412,42725461,42725460,42725461,50,+,CAACCCACCTGACACACACAGTGCCAACCATTTTGATCCAGGGTACATCG,"Exon (Tenm1-202/Tenm1, exon 14 of 31)",20,42527866,43167817,639952,2,Tenm1-202,442356,Tenm1-202;Tenm1-203;Tenm1-201,Tenm1;Tenm1;Tenm1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,23963,ENSMUSG00000016150,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25157,cg23316150,-0.0000519,0.0000106,-4.910340755,0.00000147,loss,yes,-0.0000493,0.000018,-2.744675729,0.006410266,neg,ns,0.017995288,0.00526196,3.419883229,0.000710365,pos,ns,3.148518301,-0.000668268,0.000180958,-3.692937889,0.000261906,neg,ns,0.38689551,Wasf2,Wasf2_Exon,4,133176604,133176653,133176652,133176653,50,-,GCAGCCTGAGTGAGTGCCTCAGAGAGCCTGTGCTTTGCCCTCAGGGGTCG,"Exon (Wasf2-201/Wasf2, exon 2 of 9)",4,133130505,133199756,69252,1,Wasf2-201,46099,Wasf2-201;Wasf2-206;Wasf2-204;Wasf2-203;Wasf2-202,Wasf2;Wasf2;Wasf2;Wasf2;Wasf2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,Exon,2,5,242687,ENSMUSG00000028868,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7222,cg27274433,0.0000132,0.0000083,1.587073472,0.113515436,gain,ns,0.0000387,0.0000141,2.744340951,0.006416649,pos,ns,0.005632951,0.004128734,1.364329092,0.173453631,pos,ns,0.760816606,-0.0000718,0.000141987,-0.50580964,0.613349764,neg,ns,0.894787249,Gria3,Gria3_Intron,X,41669297,41669346,41669297,41669298,50,-,CGATATGGGCAGGCCCTGGTAAATATAGCGTTGCTGTAGTGTTAACTTTT,"Intron (Gria3-202/Gria3, intron 15 of 16)",20,41401128,41676585,275458,1,Gria3-202,268169,Gria3-202;Gria3-201;Gria3-208;Gria3-206;Gria3-209,Gria3;Gria3;Gria3;Gria3;Gria3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,26,53623,ENSMUSG00000001986,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1018,cg03119066,0.0000253,0.00000439,5.756995278,2.06E-08,gain,yes,-0.0000205,0.00000746,-2.74424545,0.006418471,neg,ns,-0.002283726,0.002184444,-1.045449499,0.296629765,neg,ns,0.527785273,0.0000929,0.0000751,1.236785913,0.217102708,pos,ns,0.910864087,Mib1,Mib1_Intron,18,10787785,10787834,10787833,10787834,50,-,CCCTGACCATATTTAGTCAACCATAGCAAAAAATAGCCTCTCAGCTGTCG,"Intron (Mib1-201/Mib1, intron 12 of 20)",18,10725548,10818578,93031,1,Mib1-201,62237,Mib1-201;Mib1-205;Mib1-202,Mib1;Mib1;Mib1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,3,225164,ENSMUSG00000024294,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4587,cg09128939,0.0000166,0.00000321,5.159797454,0.000000442,gain,yes,-0.000015,0.00000545,-2.744081436,0.006421602,neg,ns,-0.000950452,0.001596918,-0.595178685,0.552158248,neg,ns,0.257936436,0.0000429,0.0000549,0.781648787,0.435017571,pos,ns,0.946689261,Eml6,Eml6_Exon,11,29880667,29880716,29880715,29880716,50,+,TCCCTGAGATCAATTTTGGTTATTGGTTTGAAATCAGTGTCCCACAGTCG,"Exon (Eml6-201/Eml6, exon 7 of 42)",11,29743048,30026033,282986,2,Eml6-201,145317,Eml6-201,Eml6,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,237711,ENSMUSG00000044072,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22517,cg27260095,0.000113753,0.00000814,13.98138949,8.85E-35,gain,yes,0.0000379,0.0000138,2.744042139,0.006422352,pos,ns,0.013627481,0.004049402,3.36530732,0.000860744,pos,ns,3.065126085,0.0000866,0.000139259,0.62150584,0.534723614,pos,ns,0.096743231,Foxd2,Foxd2_Intergenic_downstream,4,114903617,114903666,114903617,114903618,50,+,CGAAATTGAACGAAATGAAGTGAAATTGACCAGTGAAATTCGCCAATTTT,Downstream (2-3kb),4,114906282,114908873,2592,2,Foxd2-201,5207,Foxd2-201,Foxd2,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,2,3,17301,ENSMUSG00000055210,conserved gene and region,4,114903546,114903692,147,*,147,11,0.517006803,1.1484375,0.074829932,0.000000227,CpGisland,TRUE,U13,Hc-P
7839,cg01013124,-0.0000298,0.00000964,-3.095605009,0.002143426,loss,ns,0.0000449,0.0000164,2.743605192,0.006430699,pos,ns,0.008522647,0.004796724,1.776763836,0.076587689,pos,ns,1.115841033,-0.000100733,0.000164959,-0.610654129,0.541876021,neg,ns,0.196882922,Gm12455,Gm12455_Intergenic_downstream,4,44508577,44508626,44508577,44508578,50,+,CGGCTCCAGTTCATTTCTGCCTGTTTAATTGGGCCCCGGATGAGTTTGGT,Distal Intergenic,4,44382922,44383337,416,1,Gm12455-201,125655,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,15,15,,NA,mapped to different genes,4,44508566,44508719,154,*,154,13,0.662337662,0.784482759,0.084415584,2.76E-09,CpGisland,TRUE,U15,NS
16836,cg03070815,-0.00000179,0.00000479,-0.374399799,0.708362863,loss,ns,-0.0000223,0.00000814,-2.7434033,0.006434559,neg,ns,0.001604763,0.002383369,0.673317184,0.501247179,pos,ns,0.299948059,-0.000086,0.000082,-1.048723841,0.295122155,neg,ns,0.895932393,Cltc,Cltc_Exon,11,86733678,86733727,86733726,86733727,50,+,CACTGGCTGAGACTCTCCTTCCATACTCCAGTGATAAACTGCATTATCCG,"Exon (Cltc-202/Cltc, exon 3 of 32)",11,86694351,86757565,63215,2,Cltc-202,23838,Cltc-202;Cltc-201,Cltc;Cltc,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,10,67300,ENSMUSG00000047126,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10769,cg15702573,-0.0000146,0.00000284,-5.144863073,0.000000476,loss,yes,-0.0000132,0.00000482,-2.743116094,0.006440054,neg,ns,-0.001291759,0.001412191,-0.91471999,0.361049581,neg,ns,0.442433154,-0.00000971,0.0000486,-0.200003822,0.841608728,neg,ns,0.93964187,Nsd1,Nsd1_Exon,13,55312250,55312299,55312250,55312251,50,+,CGTCTGTCTTGTACTGAGCATGACCCCTGTGGGCCCAATCCTCTGGAACC,"Exon (Nsd1-207/Nsd1, exon 21 of 21)",13,55209782,55315755,105974,1,Nsd1-207,102468,Nsd1-207;Nsd1-201,Nsd1;Nsd1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,7,18193,ENSMUSG00000021488,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16410,cg08678661,-0.0000015,0.00000104,-1.432484726,0.153012736,loss,ns,0.00000487,0.00000177,2.742691701,0.006448181,pos,ns,0.001935264,0.000519734,3.723565207,0.000233278,pos,ns,3.632126058,-0.00005,0.0000179,-2.795922939,0.005498171,neg,ns,0.973575683,Rfx4,Rfx4_Exon,10,84905141,84905190,84905141,84905142,50,-,CGCAGGAATTCTGAATATGAGCACATGCAACACTTTCCTGGCTTTGCTTA,"Exon (Rfx4-202/Rfx4, exon 18 of 18)",10,84756062,84906144,150083,1,Rfx4-202,149079,Rfx4-202;Rfx4-205;Rfx4-203,Rfx4;Rfx4;Rfx4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,13,71137,ENSMUSG00000020037,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18541,cg27294582,-0.00000836,0.0000115,-0.726263327,0.468225346,loss,ns,0.0000536,0.0000196,2.742670878,0.00644858,pos,ns,-0.00287632,0.005728715,-0.502088258,0.615961871,neg,ns,0.21044617,0.000370414,0.00019701,1.880176845,0.061021498,pos,ns,0.210961504,Hoxb8,Hoxb8_fiveUTR,11,96282509,96282558,96282557,96282558,50,-,AAGACAGTGCAAAATATGAAACAACTCATTTGCAGGGAAGTAAATCACCG,Promoter (<=1kb),11,96282556,96284315,1760,1,Hoxb8-202,0,Hoxb7-201;Hoxb8-201;Hoxb8-202;Hoxb8-203,Hoxb7;Hoxb8;Hoxb8;Hoxb8,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,11,26,15416,ENSMUSG00000056648,mapped to different genes,11,96282557,96282759,203,*,203,11,0.517241379,0.858846154,0.054187192,0.00000533,CpGisland,TRUE,U13,Hc-P
24849,cg05661427,0.0000582,0.00000659,8.835691613,7.57E-17,gain,yes,-0.0000307,0.0000112,-2.74135601,0.006473821,neg,ns,-0.000278666,0.003278737,-0.084991774,0.932322793,neg,ns,0.030433698,-0.000135904,0.000112755,-1.205296644,0.229008043,neg,ns,0.68875397,Gdf11,Gdf11_Exon,10,128886171,128886220,128886219,128886220,50,-,GGGAGGTGACAGCCAGGTCTGTGCCACTGGGATCAAAGGCGTTGATCTCG,"Exon (Gdf11-201/Gdf11, exon 2 of 3)",10,128882295,128891718,9424,2,Gdf11-201,5498,Gdf11-201,Gdf11,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,7,14561,ENSMUSG00000025352,conserved gene and region,10,128886195,128886438,244,*,244,15,0.594262295,0.697940503,0.06147541,1.03E-08,CpGisland,TRUE,U11,Tr-P
27471,cg08573776,-0.00000271,0.00000137,-1.974112568,0.049256419,loss,ns,0.00000639,0.00000233,2.741303795,0.006474825,pos,ns,0.002191131,0.000683267,3.206842256,0.001482145,pos,ns,2.829109379,-0.0000364,0.0000235,-1.547069343,0.12286676,neg,ns,0.968613829,Pbx1,Pbx1_Intron,1,168327935,168327984,168327983,168327984,50,+,CATTATTTTTAATTAATCCTTAATTAAAATATATTACTCCGCAGATTCCG,"Intron (Pbx1-208/Pbx1, intron 2 of 7)",1,168119364,168432270,312907,2,Pbx1-208,104286,Pbx1-208;Pbx1-205;Pbx1-206;Pbx1-201;Pbx1-202;Pbx1-204,Pbx1;Pbx1;Pbx1;Pbx1;Pbx1;Pbx1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,84,18514,ENSMUSG00000052534,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10686,cg17246436,0.000171926,0.0000106,16.22507212,2.76E-43,gain,yes,-0.0000493,0.000018,-2.741106668,0.006478617,neg,ns,-0.00679492,0.00527389,-1.288407613,0.198564879,neg,ns,0.702097565,0.0006088,0.000181369,3.356700338,0.000887007,pos,ns,0.708105033,Zfp462,Zfp462_Intron,4,54969889,54969938,54969937,54969938,50,-,TATTTGGTTAATGGTTGACCTAGTTCTAATGCCATATGCTTCCTGGAACG,"Intron (Zfp462-204/Zfp462, intron 1 of 2)",4,54945048,55008314,63267,1,Zfp462-204,24841,Zfp462-204;Zfp462-203,Zfp462;Zfp462,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,23,242466,ENSMUSG00000060206,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15218,cg26359494,0.00000132,0.00000205,0.647672745,0.517675997,gain,ns,-0.00000952,0.00000347,-2.740729713,0.006485875,neg,ns,-0.001319449,0.001018037,-1.29607267,0.195914538,neg,ns,0.707933336,-0.00000248,0.000035,-0.070809094,0.943595352,neg,ns,0.929319905,Gtpbp1,Gtpbp1_threeUTR,15,79713336,79713385,79713384,79713385,50,+,CTAATTCTGTTCCATTGCACCCTTTAAGAAACCCTGAAGCTGTTACAGCG,3' UTR,15,79690845,79721479,30635,1,Gtpbp1-201,22491,Gtpbp1-201;Gtpbp1-206;Gtpbp1-209;Gtpbp1-205;Gtpbp1-202;Gtpbp1-204,Gtpbp1;Gtpbp1;Gtpbp1;Gtpbp1;Gtpbp1;Gtpbp1,0;0;0;0;-2847;-3621,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,4,14904,ENSMUSG00000042535,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19557,cg02703679,0.0000865,0.0000103,8.397578336,1.66E-15,gain,yes,0.0000479,0.0000175,2.740428869,0.006491672,pos,ns,0.024930617,0.005124084,4.865380166,0.00000182,pos,ns,5.739667765,-0.000437092,0.000176217,-2.480420395,0.013653316,neg,ns,0.488744339,Tmem28,Tmem28_fiveUTR,X,99821059,99821108,99821107,99821108,50,+,CCCCTGAAATATGTTCAGGGGCGCTTGGATGTGGCCCGGGAAAGACGCCG,Promoter (<=1kb),20,99821021,99848790,27770,1,Tmem28-201,38,Tmem28-201,Tmem28,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,7,620592,ENSMUSG00000071719,conserved gene but different region,X,99820045,99821113,1069,*,1069,144,0.779232928,0.896718046,0.134705332,6.18E-130,CpGisland,TRUE,U3,Pr-B
5548,cg14127269,-0.00000149,0.00000131,-1.143435031,0.253740238,loss,ns,0.00000608,0.00000222,2.739516478,0.006509283,pos,ns,0.001605121,0.00064967,2.470671329,0.014023608,pos,ns,1.853140239,-0.0000467,0.0000223,-2.088258347,0.037590314,neg,ns,0.973209742,Pbx3,Pbx3_Intron,2,34229834,34229883,34229834,34229835,50,-,CGAGACATTAAGAACTGACATGTAATCCTGTTAGGGCCCTGACGTGGAGA,"Intron (Pbx3-202/Pbx3, intron 2 of 7)",2,34171457,34372038,200582,2,Pbx3-202,142155,Pbx3-202;Pbx3-201;Pbx3-210;Pbx3-206;Pbx3-207;Pbx3-209;Pbx3-204;Pbx3-205;Pbx3-203,Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,82,18516,ENSMUSG00000038718,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21991,cg27393099,0.000103581,0.00000819,12.65415834,7.16E-30,gain,yes,-0.0000381,0.0000139,-2.739460554,0.006510364,neg,ns,0.001393463,0.004074039,0.342034748,0.732556504,pos,ns,0.135158872,0.000370078,0.000140106,2.641414584,0.008674644,pos,ns,0.340839318,Dmrta2,Dmrta2_Intergenic_downstream,4,109984349,109984398,109984349,109984350,50,-,CGCCAGGCAGTGAAACTTAATAGCAGGACAAGAAAACGGTTTAATAAAGA,Downstream (<1kb),4,109978053,109983687,5635,1,Dmrta2-201,6345,Dmrta2-201,Dmrta2,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,4,13,242620,ENSMUSG00000047143,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
1247,cg18315252,-0.0000189,0.0000148,-1.279552306,0.201659455,loss,ns,0.0000688,0.0000251,2.739408141,0.006511377,pos,ns,0.018208138,0.007356156,2.475224701,0.013849566,pos,ns,1.858563835,-0.000532507,0.000252978,-2.104956934,0.036099563,neg,ns,0.64244341,Bcor,Bcor_Intron,X,12130975,12131024,12131023,12131024,50,-,CACATCCTCTTGTGCATGGATTCAATGTTTAATACACAATATTGAATACG,"Intron (Bcor-201/Bcor, intron 1 of 13)",20,12036743,12160355,123613,2,Bcor-201,29331,Bcor-201;Bcor-207;Bcor-205;Bcor-208,Bcor;Bcor;Bcor;Bcor,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,56,74,71458,ENSMUSG00000040363,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
5699,cg13910855,0.000136209,0.0000118,11.5558104,6.32E-26,gain,yes,-0.0000549,0.00002,-2.739366567,0.006512181,neg,ns,-0.009255376,0.00586654,-1.577655032,0.115664743,neg,ns,0.936799002,0.00039141,0.00020175,1.940075861,0.053277145,pos,ns,0.18358872,Pbx2,Pbx2_Exon,17,34592712,34592761,34592760,34592761,50,-,CGGGGACATTCTGCAGCAGATAATGACCATCACCGACCAGAGCCTGGACG,Promoter (<=1kb),17,34592734,34596416,3683,1,Pbx2-205,0,Gpsm3-201;Gpsm3-202;Gpsm3-203;Notch4-201;Notch4-211;Notch4-210;Pbx2-203;Pbx2-201;Pbx2-205;Pbx2-204;Pbx2-202,Gpsm3;Gpsm3;Gpsm3;Notch4;Notch4;Notch4;Pbx2;Pbx2;Pbx2;Pbx2;Pbx2,2906;2620;2481;0;0;5671;0;0;0;-634;-2699,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,4,18515,ENSMUSG00000034673,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
25552,cg08855037,0.0000281,0.0000108,2.605677197,0.009611782,gain,ns,0.0000503,0.0000184,2.738689927,0.006525274,pos,ns,0.015074488,0.005376442,2.803803442,0.005368862,pos,ns,2.270117757,-0.000272427,0.000184895,-1.473410612,0.141655006,neg,ns,0.242359326,Gm13005,Gm13005_Intergenic_downstream,4,137212197,137212246,137212245,137212246,50,-,CCACATTTTTCAGTGACATTAATCTCTAGCCGGAAAAGCCTCTCTGGACG,Distal Intergenic,4,137219760,137220399,640,2,Gm13005-201,8202,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,4,100047000,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10361,cg21062691,-0.0000158,0.00000635,-2.48029359,0.013658076,loss,ns,0.0000295,0.0000108,2.738589942,0.006527211,pos,ns,0.003009663,0.003160575,0.952251585,0.341711274,pos,ns,0.466340692,-0.000167079,0.000108692,-1.537178252,0.125269683,neg,ns,0.698600261,Plac1,Plac1_Intron,X,53214705,53214754,53214753,53214754,50,-,GCAATGTGGACTGGCCTCCAAGTCCCTTAATCACCTATTTCATCATCTCG,"Intron (Plac1-201/Plac1, intron 1 of 2)",20,53069995,53240111,170117,2,Plac1-201,25357,Plac1-201;Plac1-203,Plac1;Plac1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,56096,ENSMUSG00000061082,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12923,cg12579673,-0.0000139,0.00000581,-2.395503151,0.017190497,loss,ns,0.000027,0.00000987,2.738071116,0.00653727,pos,ns,0.002256856,0.002890242,0.780853692,0.43548442,pos,ns,0.361027378,0.0000368,0.0000994,0.370657368,0.711145893,pos,ns,0.063678446,Arid5b,Arid5b_Promoter,10,68279677,68279726,68279677,68279678,50,+,CGTGTTTACAATGCTGATGGACGCCAAGGGCGCTCTCAAATGATAATGTG,Promoter (<=1kb),10,68092520,68278740,186221,2,Arid5b-204,-937,Arid5b-204;Arid5b-201;Arid5b-202,Arid5b;Arid5b;Arid5b,0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,16,33,71371,ENSMUSG00000019947,conserved gene and region,10,68279593,68279827,235,*,235,14,0.50212766,0.955007257,0.059574468,5.38E-08,CpGisland,TRUE,U1,Pr-A
7335,cg06658439,-0.00000838,0.0000126,-0.665181606,0.506428914,loss,ns,0.0000586,0.0000214,2.738047745,0.006537723,pos,ns,0.007455824,0.006268791,1.189355911,0.235209813,pos,ns,0.628544563,-0.000262459,0.000215583,-1.217437767,0.224363616,neg,ns,0.492508503,Ptchd4,Ptchd4_Exon,17,42317183,42317232,42317183,42317184,50,-,CGTCTCCAATAAGACAACAGCCAGGGTGCAAGTGAGGTATCCCAACACTA,"Exon (Ptchd4-201/Ptchd4, exon 2 of 4)",17,42315947,42505077,189131,1,Ptchd4-201,1236,Ptchd4-201;Ptchd4-203;Ptchd4-202,Ptchd4;Ptchd4;Ptchd4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,9,627626,ENSMUSG00000042256,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25831,cg02462130,0.0000129,0.0000134,0.963067836,0.336264108,gain,ns,0.0000625,0.0000228,2.737909286,0.00654041,pos,ns,0.022898132,0.006689743,3.422871563,0.000702885,pos,ns,3.15311558,-0.000255623,0.00023006,-1.111114394,0.267380139,neg,ns,0.118100354,Uncx,Uncx_Intergenic_downstream,5,139585596,139585645,139585644,139585645,50,+,GAAATTGAAGTGCTTTGTGCTGCCAGTGGAAAGCCGGGTGACCCGCCTCG,Distal Intergenic,5,139543898,139545268,1371,1,Uncx-202,41698,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,59,88,22255,ENSMUSG00000029546,conserved gene and region,5,139585354,139585726,373,*,373,27,0.616621984,0.761512287,0.072386059,4.94E-17,CpGisland,TRUE,U13,Hc-P
5967,cg11838603,0.0000199,0.00000699,2.844212358,0.004748141,gain,ns,0.0000325,0.0000119,2.737546438,0.006547456,pos,ns,0.006333974,0.003480112,1.820048994,0.069715792,pos,ns,1.156668836,-0.000213162,0.000119681,-1.781087277,0.075877262,neg,ns,0.686965957,Slit3,Slit3_Exon,11,35616828,35616877,35616828,35616829,50,-,CGGGGCTTTCCTTTGTGCTTGATCTAACCATGTGGTGGAACGATGGAAAC,"Exon (Mir218-2-201/Mir218-2-201, exon 1 of 1)",11,35121224,35708507,587284,1,Slit3-201,495604,Slit3-201;Slit3-202,Slit3;Slit3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,21,20564,ENSMUSG00000056427,mapped to different genes,11,35616700,35617001,302,*,302,18,0.602649007,0.686363636,0.059602649,4.00E-10,CpGisland,TRUE,U15,NS
19042,cg09117488,0.0000675,0.00000778,8.6827726,2.24E-16,gain,yes,-0.0000362,0.0000132,-2.737368262,0.006550918,neg,ns,0.002641943,0.003869759,0.682715314,0.495296608,pos,ns,0.305134647,-0.000354812,0.000133081,-2.666139147,0.008075197,neg,ns,0.713538213,Cdk12,Cdk12_Intergenic_downstream,11,98283790,98283839,98283838,98283839,50,-,TTAATTAACAAATTCACATGCATATTCATCAGGCTATTAATGTCTTCTCG,Distal Intergenic,11,98263502,98268011,4510,1,Cdk12-204,20337,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,25,69131,ENSMUSG00000003119,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19045,cg26077120,0.000281906,0.0000235,11.99354628,1.75E-27,gain,yes,-0.000109296,0.0000399,-2.737084547,0.006556435,neg,ns,-0.015365317,0.011698582,-1.313434156,0.190007969,neg,ns,0.721228184,0.0000174,0.000402313,0.043283901,0.965503091,pos,ns,0.453495946,Cdk12,Cdk12_Intergenic_downstream,11,98284364,98284413,98284364,98284365,50,+,CGGCATCAGCGCCGAATTGCCATCTCCTTGAGCTCTCTGTGGAGCAATCT,Distal Intergenic,11,98263502,98268011,4510,1,Cdk12-204,20862,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,25,69131,ENSMUSG00000003119,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21119,cg12001730,-0.000000197,0.0000166,-0.011836719,0.990563499,loss,ns,0.0000774,0.0000283,2.736943838,0.006559173,pos,ns,0.003242506,0.008281306,0.391545269,0.695663237,pos,ns,0.157600947,0.000129879,0.000284793,0.456047747,0.648674957,pos,ns,0.325170732,Barhl2,Barhl2_Intergenic_upstream,5,106472059,106472108,106472059,106472060,50,+,CGTTAAGCTTTGATATTATGAATTCCTTGGAGGTGATGCAAACAAGAAGG,Distal Intergenic,5,106452523,106458166,5644,2,Barhl2-201,-13893,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,27,104382,ENSMUSG00000034384,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
7629,cg00349375,0.0000292,0.000011,2.66557903,0.008088354,gain,ns,-0.0000509,0.0000186,-2.736911387,0.006559804,neg,ns,0.034062727,0.005450149,6.249870204,1.36E-09,pos,ns,8.86755484,-0.000431854,0.00018743,-2.30407825,0.02187926,neg,ns,0.239708332,Zbtb20,Zbtb20_Intron,16,43504321,43504370,43504369,43504370,50,+,GCCCAAAAGCCTCTAAGTGTTTTGCACTTGTTTCAGGGAGTAGCTGCCCG,"Intron (Zbtb20-211/Zbtb20, intron 4 of 4)",16,42907542,43569781,662240,1,Zbtb20-211,596779,Zbtb20-211;Zbtb20-217;Zbtb20-204;Zbtb20-215;Zbtb20-201;Zbtb20-203;Zbtb20-214;Zbtb20-213;Zbtb20-219;Zbtb20-216;Zbtb20-208;Zbtb20-207;Zbtb20-220;Zbtb20-206;Zbtb20-221;Zbtb20-202,Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,98,56490,ENSMUSG00000022708,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27244,cg03178290,0.0000692,0.0000114,6.082154446,3.49E-09,gain,yes,0.0000529,0.0000193,2.736606344,0.006565743,pos,ns,0.025275066,0.005665255,4.461417228,0.0000114,pos,ns,4.942918186,-0.000603351,0.000194828,-3.096843536,0.002134762,neg,ns,0.545364133,Nhs,Nhs_Exon,X,161908707,161908756,161908755,161908756,50,+,TGAATGGATGCTGCCTTCTGATGAGGAAGTCGACTGGGGAGGTCTCTGCG,"Exon (Gm15202-201/Gm15202-201, exon 2 of 2)",20,161833296,162159730,326435,2,Nhs-202,250974,Nhs-202;Nhs-201,Nhs;Nhs,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,12,195727,ENSMUSG00000059493,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
4845,cg24008903,-0.00000666,0.0000018,-3.698146539,0.000256814,loss,ns,0.00000837,0.00000306,2.735572698,0.006585903,pos,ns,0.002151165,0.000896611,2.399218676,0.017020269,pos,ns,1.769033576,-0.0000165,0.0000308,-0.53474345,0.593210599,neg,ns,0.05698856,Usf2,Usf2_Exon,7,30955855,30955904,30955855,30955856,50,-,CGCTGGGCTGCCCCGTCCACACCCACCTGGGTCACAGCCTGCTGCCCCCC,Promoter (<=1kb),7,30945248,30956803,11556,2,Usf2-201,899,Lsr-202;Lsr-201;Lsr-203;Lsr-205;Lsr-204;Usf2-201;Usf2-205;Usf2-208;Usf2-203;Usf2-209;Usf2-210;Usf2-211;Usf2-202;Usf2-207;Usf2-204;Usf2-206,Lsr;Lsr;Lsr;Lsr;Lsr;Usf2;Usf2;Usf2;Usf2;Usf2;Usf2;Usf2;Usf2;Usf2;Usf2;Usf2,17522;17560;17523;17418;17511;0;0;0;0;0;0;0;0;-405;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,22282,ENSMUSG00000058239,conserved gene but different region,7,30955786,30957106,1321,*,1321,161,0.774413323,0.813311664,0.121877366,5.10E-137,CpGisland,TRUE,U6,En-Sp
12738,cg06398214,-0.0000148,0.00000529,-2.791217775,0.005576716,loss,ns,0.0000246,0.00000898,2.735136596,0.006594426,pos,ns,0.005962853,0.002631896,2.26561168,0.024164733,pos,ns,1.616817995,-0.000223623,0.0000905,-2.470678983,0.014023314,neg,ns,0.820105779,Ppp2r2a,Ppp2r2a_threeUTR,14,67022305,67022354,67022353,67022354,50,+,TTTAAGTCCCAAATTTTGACTGACAAATAGTCTCTAGTCATCATATATCG,3' UTR,14,67014056,67072444,58389,2,Ppp2r2a-201,50090,Ppp2r2a-201;Ppp2r2a-204;Ppp2r2a-203;Ppp2r2a-202;Ppp2r2a-205,Ppp2r2a;Ppp2r2a;Ppp2r2a;Ppp2r2a;Ppp2r2a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,5,71978,ENSMUSG00000022052,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13091,cg25212682,-0.00000019,0.00000131,-0.145070402,0.884749561,loss,ns,-0.00000609,0.00000223,-2.734666197,0.006603629,neg,ns,0.003512396,0.000652419,5.38365185,0.000000144,pos,ns,6.840527684,-0.000130732,0.0000224,-5.826708455,1.42E-08,neg,yes,0.979507044,Kdm6b,Kdm6b_Exon,11,69406367,69406416,69406415,69406416,50,-,AGGCACGCAGGCGGTGGTTGCTGCTGGTGAAACGCTGGAGTCCATCCGCG,"Exon (Kdm6b-201/Kdm6b, exon 10 of 23)",11,69398508,69413675,15168,2,Kdm6b-201,7259,Kdm6b-201;Kdm6b-202,Kdm6b;Kdm6b,0;-2152,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,8,216850,ENSMUSG00000018476,conserved gene and region,11,69406336,69406459,124,*,124,10,0.661290323,0.766852195,0.080645161,0.000000493,CpGisland,TRUE,U10,Tr-S
4427,cg08299862,0.00000741,0.00000353,2.100117288,0.036526315,gain,ns,-0.0000164,0.000006,-2.734411207,0.006608623,neg,ns,0.000757953,0.001757076,0.431371756,0.666497912,pos,ns,0.176201207,-0.00000254,0.0000604,-0.042025411,0.966505495,neg,ns,0.85319156,Ddx31,Ddx31_Intron,2,28891136,28891185,28891136,28891137,50,+,CGATTGGGAAAAGGAGTTCACTTTACTCAGTAAATAGAGCTTTGATGGAT,"Intron (Ddx31-201/Ddx31, intron 18 of 19)",2,28840459,28905571,65113,1,Ddx31-201,50677,Ddx31-201,Ddx31,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,5,227674,ENSMUSG00000026806,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3427,cg11308371,0.0000363,0.00000638,5.697601967,2.83E-08,gain,yes,-0.0000296,0.0000108,-2.733150095,0.006633373,neg,ns,-0.011339026,0.003175028,-3.57131516,0.000411591,neg,ns,3.385533865,0.000270944,0.000109189,2.481424809,0.013615664,pos,ns,0.137879346,Bcl11a,Bcl11a_fiveUTR,11,24078013,24078062,24078013,24078014,50,-,CGCCCTGCCCATGTTTTGTGTGTCTCTGTCCATCCAGACTCCTGACGTTC,Promoter (<=1kb),11,24078056,24173194,95139,1,Bcl11a-201,0,A830031A19Rik-201;Bcl11a-201;Bcl11a-203;Bcl11a-205;Bcl11a-202;Bcl11a-204,A830031A19Rik;Bcl11a;Bcl11a;Bcl11a;Bcl11a;Bcl11a,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,10,98,14025,ENSMUSG00000000861,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3853,cg24949381,-0.0000419,0.0000137,-3.063474674,0.002379829,loss,ns,0.0000635,0.0000233,2.73261006,0.006643996,pos,ns,0.009894081,0.006811834,1.452484125,0.147378435,pos,ns,0.831566059,-0.0000753,0.000234258,-0.321406433,0.748119002,neg,ns,0.280690359,Dmrt1,Dmrt1_Intron,19,25602174,25602223,25602174,25602175,50,-,CGTGGCAGATGCTGGCAGTTAGTTACACAAACATTAGTATTAACGATTGG,"Intron (Dmrt1-201/Dmrt1, intron 4 of 4)",19,25505618,25604329,98712,1,Dmrt1-201,96556,Dmrt1-201;Dmrt1-202,Dmrt1;Dmrt1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,9,50796,ENSMUSG00000024837,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
2989,cg07934336,-0.0000284,0.0000132,-2.151077391,0.032242658,loss,ns,-0.0000613,0.0000224,-2.732478023,0.006646596,neg,ns,-0.013967346,0.00656962,-2.126050896,0.034289058,neg,ns,1.464844449,0.000191064,0.000225929,0.845683585,0.398381553,pos,ns,0.610494425,Tra2b,Tra2b_threeUTR,16,22258942,22258991,22258990,22258991,50,-,GTTTAGCAAAATATACAGGGACACATAAACAGACTAGTAATTACTTAGCG,3' UTR,16,22244549,22266005,21457,2,Tra2b-204,7014,Tra2b-204;Tra2b-201;Tra2b-206;Tra2b-202;Tra2b-209;Tra2b-203;Tra2b-207,Tra2b;Tra2b;Tra2b;Tra2b;Tra2b;Tra2b;Tra2b,0;-3695;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,3,20462,ENSMUSG00000022858,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27142,cg22309376,0.0000354,0.000012,2.957261148,0.003342414,gain,ns,0.0000556,0.0000203,2.732472265,0.00664671,pos,ns,0.020126744,0.005961677,3.376020706,0.000829065,pos,ns,3.081411197,-0.000261021,0.000205022,-1.27313799,0.203922971,neg,ns,0.138445636,Rps6ka3,Rps6ka3_Intron,X,159257237,159257286,159257285,159257286,50,+,ATAGTTACTGAGTGAGTGACCCCATTTCTGGAAAGCATGACTGAAACGCG,"Intron (Rps6ka3-204/Rps6ka3, intron 2 of 24)",20,159210307,159364502,154196,1,Rps6ka3-204,46930,Rps6ka3-204;Rps6ka3-205;Rps6ka3-201;Rps6ka3-203;Rps6ka3-207,Rps6ka3;Rps6ka3;Rps6ka3;Rps6ka3;Rps6ka3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,6,110651,ENSMUSG00000031309,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
23199,cg08859626,-0.00000499,0.00000534,-0.933777327,0.351145509,loss,ns,-0.0000248,0.00000908,-2.732069234,0.006654651,neg,ns,-0.005143611,0.002658919,-1.934474608,0.053964523,neg,ns,1.267891656,-0.000147597,0.0000914,-1.614136118,0.107515281,neg,ns,0.849293885,Cmip,Cmip_Exon,8,117431228,117431277,117431228,117431229,50,+,CGGGTCCTGCCCAACCTGGTGGCCGTGTGCCTGGCTGCCATCTACTCCTG,"Exon (Cmip-202/Cmip, exon 9 of 21)",8,117257064,117459430,202367,1,Cmip-202,174164,Cmip-202;Cmip-203;Cmip-201;Cmip-204,Cmip;Cmip;Cmip;Cmip,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,74440,ENSMUSG00000034390,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24974,cg04567755,0.0000144,0.0000134,1.075556714,0.282961927,gain,ns,-0.0000622,0.0000228,-2.731936869,0.006657261,neg,ns,0.045769457,0.006674319,6.857547029,3.80E-11,pos,yes,10.42005232,-0.00161452,0.000229529,-7.034047984,1.29E-11,neg,yes,0.489114321,Pum1,Pum1_Exon,4,130753969,130754018,130754017,130754018,50,-,CCCGCCGTGACTCCCTGACTGGCAGCAGTGACCTTTATAAGAGGACATCG,"Exon (Pum1-201/Pum1, exon 14 of 22)",4,130663321,130781564,118244,1,Pum1-201,90648,Pum1-201;Pum1-204;Pum1-205;Pum1-203;Pum1-202,Pum1;Pum1;Pum1;Pum1;Pum1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,8,80912,ENSMUSG00000028580,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24371,cg11028350,-0.000066,0.0000124,-5.330953927,0.000000189,loss,yes,-0.0000575,0.000021,-2.731735704,0.00666123,neg,ns,0.016750247,0.006161374,2.718589383,0.006925251,pos,ns,2.15956445,-0.001438409,0.000211889,-6.788495988,5.77E-11,neg,yes,0.446306644,Ing4,Ing4_Exon,6,125046906,125046955,125046954,125046955,50,-,CTGAAGGCTGAAATTGACAAGTTGGCCACTGAGTATATGAGTAGTGCCCG,"Exon (Ing4-205/Ing4, exon 3 of 8)",6,125039760,125049002,9243,1,Ing4-205,7146,Acrbp-205;Acrbp-204;Acrbp-202;Acrbp-201;Acrbp-203;Ing4-205;Ing4-203;Ing4-201;Ing4-208;Ing4-207;Ing4-202;Ing4-209;Ing4-204;Ing4-206,Acrbp;Acrbp;Acrbp;Acrbp;Acrbp;Ing4;Ing4;Ing4;Ing4;Ing4;Ing4;Ing4;Ing4;Ing4,-2734;-2992;-3004;-3012;-4899;0;7070;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,5,28019,ENSMUSG00000030330,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10708,cg11344291,-0.00000185,0.00000101,-1.820871206,0.06959035,loss,ns,0.00000471,0.00000172,2.730885407,0.006678027,pos,ns,-0.000231028,0.000504876,-0.457594066,0.647564652,neg,ns,0.188716866,-0.00000802,0.0000174,-0.461840998,0.644519278,neg,ns,0.991444089,Unc5a,Unc5a_Exon,13,54997179,54997228,54997227,54997228,50,-,CTCTGTCCGGCCAGTGAACGGTGGGTGGTCGACGTGGACCGAGTGGTCCG,"Exon (Unc5a-201/Unc5a, exon 6 of 16)",13,54949411,55006018,56608,1,Unc5a-201,47768,Unc5a-201;Unc5a-202;Unc5a-203,Unc5a;Unc5a;Unc5a,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,12,107448,ENSMUSG00000025876,conserved gene and region,13,54997158,54997472,315,*,315,22,0.676190476,0.63,0.06984127,1.18E-13,CpGisland,TRUE,U11,Tr-P
24627,cg20930899,0.0000229,0.0000128,1.783800517,0.075434189,gain,ns,-0.0000595,0.0000218,-2.730871969,0.006678293,neg,ns,0.023813822,0.006378107,3.733682073,0.000224489,pos,ns,3.64880517,-0.00133532,0.000219343,-6.087827119,3.38E-09,neg,yes,0.430770261,Mbd6,Mbd6_threeUTR,10,127282837,127282886,127282885,127282886,50,-,GGGGCCAGTTTCCTCCTCTTGTTTTTGGCAGGACGGCCAGGGCGGGCCCG,Promoter (<=1kb),10,127281956,127283668,1713,2,Mbd6-204,782,Dctn2-201;Dctn2-205;Dctn2-203;Dctn2-204;Mbd6-204;Mbd6-203;Mbd6-201;Mbd6-202;Mbd6-205;Mbd6-207;Mbd6-206,Dctn2;Dctn2;Dctn2;Dctn2;Mbd6;Mbd6;Mbd6;Mbd6;Mbd6;Mbd6;Mbd6,0;5897;5556;5431;0;0;0;0;0;1485;0,TRUE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,6,110962,ENSMUSG00000025409,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14117,cg07144534,0.000000162,0.00000131,0.123806966,0.901548351,gain,ns,0.00000608,0.00000223,2.730391201,0.006687808,pos,ns,0.001811502,0.00065209,2.777993873,0.005802948,pos,ns,2.23635135,-0.0000424,0.0000224,-1.88959809,0.059744665,neg,ns,0.970240494,Birc6,Birc6_threeUTR,17,74686128,74686177,74686176,74686177,50,-,ATCACAACCAGATTCAACGTATGCACAAAGCAGCGGATACCATGGTAGCG,3' UTR,17,74528295,74703356,175062,1,Birc6-202,157833,Birc6-202;Birc6-204;Birc6-213;Birc6-218;Birc6-220;Birc6-221;Birc6-215,Birc6;Birc6;Birc6;Birc6;Birc6;Birc6;Birc6,0;0;0;0;0;0;15921,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,10,12211,ENSMUSG00000024073,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17943,cg22094235,0.000277414,0.0000206,13.49597257,5.71E-33,gain,yes,-0.0000953,0.0000349,-2.729806953,0.006699387,neg,ns,0.018861398,0.010230608,1.843624247,0.066192225,pos,ns,1.179193019,-0.001188779,0.00035183,-3.378847157,0.000820891,neg,ns,0.292487369,Runx1,Runx1_Exon,16,92695701,92695750,92695749,92695750,50,+,GTGGAAGGCGGCGTGAAGCGGCGGCTCGTGCTGGCATCTACGGGGATACG,"Exon (Runx1-201/Runx1, exon 3 of 8)",16,92601466,92826149,224684,2,Runx1-201,130399,Runx1-201;Runx1-202;Runx1-203;Runx1-205;Runx1-206;Runx1-204,Runx1;Runx1;Runx1;Runx1;Runx1;Runx1,0;0;0;-206;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,10,12394,ENSMUSG00000022952,mapped to different genes,16,92695398,92695878,481,*,481,36,0.636174636,0.74,0.074844075,5.11E-23,CpGisland,TRUE,U3,Pr-B
7010,cg17902929,-0.0000152,0.0000109,-1.393043318,0.164604816,loss,ns,0.0000505,0.0000185,2.729560441,0.006704278,pos,ns,0.002057971,0.005422565,0.379519786,0.704561762,pos,ns,0.152080931,0.000154647,0.000186482,0.829289873,0.407578494,pos,ns,0.831013614,Gm7382,Gm7382_Promoter,15,40533986,40534035,40534034,40534035,50,-,GCAGAGCAAATTGAAAGCGTCTCCATGTTTGCAGAATTGGGTCCAGAACG,Promoter (3-4kb),15,40537321,40538425,1105,1,Gm7382-201,-3335,Gm7382-201,Gm7382,-3286,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,17,22,664872,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5933,cg06513706,-0.00000748,0.00000589,-1.270068682,0.205012632,loss,ns,0.0000273,0.00001,2.729545024,0.006704584,pos,ns,-0.002636175,0.002929811,-0.899776528,0.368937595,neg,ns,0.433047087,-0.00011666,0.000100756,-1.157842338,0.247819657,neg,ns,0.744704542,Gm7733,Gm7733_Intergenic_downstream,3,35362272,35362321,35362320,35362321,50,-,AGGCAGATACCATCAAAACACATCTCACTTGTGACCTTTCACAGCCAACG,Distal Intergenic,3,35536882,35537800,919,2,Gm7733-201,175528,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,14,15,665655,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
707,cg08885656,-0.00000757,0.00000697,-1.085004417,0.278762751,loss,ns,0.0000323,0.0000118,2.729409109,0.006707283,pos,ns,-0.002439329,0.0034714,-0.702693258,0.482774258,neg,ns,0.316255895,0.00000688,0.000119381,0.057595566,0.954107888,pos,ns,0.71510672,Porcn,Porcn_threeUTR,X,8203794,8203843,8203794,8203795,50,+,CGCATCTTGTGCCATGTCACGGTGTCTACCATGTGCATCTCACTGAGGAA,3' UTR,20,8193848,8206525,12678,2,Porcn-202,2682,Porcn-202;Porcn-207;Porcn-201;Porcn-203;Porcn-204;Porcn-205;Porcn-206,Porcn;Porcn;Porcn;Porcn;Porcn;Porcn;Porcn,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,4,53627,ENSMUSG00000031169,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23956,cg06538073,-0.00018282,0.0000248,-7.368042452,1.58E-12,loss,yes,0.000115048,0.0000422,2.729275362,0.006709939,pos,ns,0.073208014,0.012349493,5.92801796,8.17E-09,pos,ns,8.088000134,-0.002924305,0.000424698,-6.885609931,3.20E-11,neg,yes,0.316489901,Ccdc93,Ccdc93_Intergenic_upstream,1,121391199,121391248,121391199,121391200,50,-,CGAAGCAGATGATAAATCATTTGTATATAATTAGTGTACAGCAAGGTTAC,Distal Intergenic,1,121431049,121506460,75412,1,Ccdc93-201,-39850,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,70829,ENSMUSG00000026339,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15584,cg21940324,-0.0000028,0.00000291,-0.961076431,0.337262759,loss,ns,0.0000135,0.00000495,2.727855597,0.006738193,pos,ns,0.004071586,0.001450236,2.80753306,0.005308631,pos,ns,2.275017441,-0.0000829,0.0000499,-1.661247083,0.097674781,neg,ns,0.063859301,Cetn3,Cetn3_Intergenic_downstream,13,81944303,81944352,81944303,81944304,50,-,CGCTGGAGCACGCTGGACCTCATCTGCTTAAAAAGATGCACGGATATAGT,Distal Intergenic,13,81791977,81793668,1692,1,Cetn3-204,152375,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,9,12626,ENSMUSG00000021537,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25318,cg06625548,-0.00000382,0.00000385,-0.991962775,0.321989315,loss,ns,-0.0000179,0.00000654,-2.727779795,0.006739705,neg,ns,0.010508661,0.001917199,5.481257695,8.76E-08,pos,ns,7.05746033,-0.000128632,0.0000659,-1.950973868,0.051960805,neg,ns,0.902161303,Maco1,Maco1_threeUTR,4,134812535,134812584,134812535,134812536,50,-,CGTACTTGTTCTGCAGCAGCTCGTTCTCCTGCCGAAGCTGGCCCATTTCT,3' UTR,4,134802759,134853345,50587,2,Maco1-201,40761,Maco1-205;Maco1-201;Maco1-203,Maco1;Maco1;Maco1,-1322;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,3,66146,ENSMUSG00000028826,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27009,cg20316422,-0.0000221,0.00000525,-4.213883086,0.000033,loss,ns,-0.0000243,0.00000892,-2.727113726,0.006753,neg,ns,0.005620881,0.00261386,2.150414501,0.032295475,pos,ns,1.490858318,-0.000431149,0.0000899,-4.796389729,0.00000251,neg,ns,0.902051468,Rbm39,Rbm39_threeUTR,2,156167698,156167747,156167746,156167747,50,+,TATGAGGCAACCCAATCTTTCCTCGGATGGCACTGTTAAATTTTGGTCCG,3' UTR,2,156147239,156180238,33000,2,Rbm39-203,12491,Rbm39-203;Rbm39-217;Rbm39-215;Rbm39-201;Rbm39-225;Rbm39-223;Rbm39-220;Rbm39-204;Rbm39-209;Rbm39-207;Rbm39-206;Rbm39-216;Rbm39-221;Rbm39-213;Rbm39-214,Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39,0;0;0;0;0;0;-2775;0;-2486;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,11,13,170791,ENSMUSG00000027620,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11896,cg07363781,0.00000556,0.00000853,0.651593366,0.51514629,gain,ns,-0.0000395,0.0000145,-2.72709592,0.006753355,neg,ns,-0.008860731,0.004243137,-2.088249957,0.037591076,neg,ns,1.424915243,0.0000712,0.000145921,0.487709779,0.626100159,pos,ns,0.090230203,Csnk1a1,Csnk1a1_Exon,18,61557019,61557068,61557067,61557068,50,-,TTTTGTTCCAACATGTCTTCCTCCTCCGCTTAGAAAATGGCGGAACGACG,"Exon (Csnk1a1-205/Csnk1a1, exon 2 of 2)",18,61555274,61590061,34788,1,Csnk1a1-204,1745,Csnk1a1-204;Csnk1a1-206;Csnk1a1-201;Csnk1a1-207;Csnk1a1-202;Csnk1a1-205;Csnk1a1-210;Csnk1a1-208,Csnk1a1;Csnk1a1;Csnk1a1;Csnk1a1;Csnk1a1;Csnk1a1;Csnk1a1;Csnk1a1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,9,93687,ENSMUSG00000024576,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
6147,cg13752936,-0.0000361,0.0000207,-1.741645377,0.082562436,loss,ns,0.0000961,0.0000352,2.726929671,0.006756678,pos,ns,0.010462527,0.01032543,1.013277555,0.311717806,pos,ns,0.506238389,-0.000279818,0.000355091,-0.788018191,0.431288204,neg,ns,0.476038937,Tenm2,Tenm2_Intron,11,36152750,36152799,36152750,36152751,50,-,CGGGGTGAATTTAATTGCTTTAGTTAAGTGGAAATCGGGTTAAAAATGAT,"Intron (Tenm2-202/Tenm2, intron 11 of 30)",11,36006656,37235882,1229227,2,Tenm2-202,1083083,Tenm2-202;Tenm2-208;Tenm2-201;Tenm2-204;Tenm2-205,Tenm2;Tenm2;Tenm2;Tenm2;Tenm2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,47,84,23964,ENSMUSG00000049336,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13265,cg17975449,0.0000183,0.00000519,3.533263891,0.000472932,gain,ns,-0.000024,0.00000882,-2.726897524,0.00675732,neg,ns,-0.00275507,0.002582676,-1.066749966,0.286914821,neg,ns,0.542247016,0.000151585,0.0000888,1.706688105,0.088881447,pos,ns,0.694674691,Gm44690,Gm44690_Intergenic_upstream,7,69950199,69950248,69950199,69950200,50,-,CGCTGAAAGAAGCTTGTCACGGTGGTTGGTAGCTAATGAAGGCCCCTTTA,Distal Intergenic,7,69883979,69884360,382,2,Gm44690-201,-65888,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,15,24,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
308,cg22313325,0.00000368,0.00000193,1.903336706,0.057922686,gain,ns,-0.00000896,0.00000329,-2.725859368,0.006778101,neg,ns,-0.001514173,0.000962739,-1.572777086,0.116790469,neg,ns,0.932592598,2.19E-08,0.0000331,0.000660314,0.999473571,pos,ns,0.951828453,Ewsr1,Ewsr1_threeUTR,11,5080592,5080641,5080640,5080641,50,+,CCGTGTCTAGTCCCACTTTTCATTATGCTGCCGGCTGAGTACTGAGTACG,3' UTR,11,5069689,5099266,29578,2,Ewsr1-203,18625,Ewsr1-203;Ewsr1-202;Ewsr1-205;Ewsr1-209;Ewsr1-212;Ewsr1-208;Ewsr1-211;Ewsr1-204;Ewsr1-210,Ewsr1;Ewsr1;Ewsr1;Ewsr1;Ewsr1;Ewsr1;Ewsr1;Ewsr1;Ewsr1,0;0;0;0;-2071;0;0;0;5395,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,8,14030,ENSMUSG00000009079,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15885,cg22525783,0.0000324,0.00000681,4.765019789,0.00000291,gain,ns,-0.0000315,0.0000116,-2.725736821,0.006780558,neg,ns,-0.011885553,0.00338848,-3.507635422,0.000518969,neg,ns,3.284858812,0.000277722,0.00011653,2.383275598,0.017761349,pos,ns,0.869489738,Ccdc171,Ccdc171_threeUTR,4,83742976,83743025,83742976,83742977,50,-,CGTCAGCTCAATAGACATCTTACCCAGCTGGAGCAGGACAAGCGTCGACT,3' UTR,4,83525545,83864670,339126,1,Ccdc171-201,217431,Ccdc171-201;Ccdc171-206;Ccdc171-203;Ccdc171-205,Ccdc171;Ccdc171;Ccdc171;Ccdc171,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,9,320226,ENSMUSG00000052407,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1416,cg27704080,0.0000213,0.00000786,2.711515653,0.007071191,gain,ns,0.0000364,0.0000134,2.725130959,0.006792716,pos,ns,0.00859867,0.003912003,2.198022135,0.028686581,pos,ns,1.542321205,-0.0000841,0.000134533,-0.625443667,0.532140061,neg,ns,0.252444967,Rpl36-ps3,Rpl36-ps3_Intergenic_upstream,12,12725229,12725278,12725277,12725278,50,+,TTCAGATCCATCACCCTGAGATAAACTGTGAATATTGCCCTTTGTCGCCG,Distal Intergenic,12,12912022,12912336,315,1,Rpl36-ps3-201,-186744,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,19,20,100043215,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6272,cg07833128,-0.00005,0.0000102,-4.916387897,0.00000143,loss,yes,0.0000471,0.0000173,2.725087219,0.006793595,pos,ns,-0.000145551,0.005062516,-0.028750805,0.977081837,neg,ns,0.01006906,0.00016984,0.0001741,0.975535922,0.330055117,pos,ns,0.478750946,Tshz3,Tshz3_Intron,7,36707977,36708026,36707977,36707978,50,+,CGTCGGAGAATTCATTTCAGAGTTCTGAAACTAAATCCTGGTGGAGAAGA,"Intron (Tshz3-201/Tshz3, intron 1 of 1)",7,36698118,36773553,75436,1,Tshz3-201,9859,Tshz3-201,Tshz3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,58,243931,ENSMUSG00000021217,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4531,cg24120683,0.00000181,0.0000134,0.135369783,0.892407369,gain,ns,0.0000618,0.0000227,2.725081035,0.006793719,pos,ns,0.007506803,0.006645124,1.129670849,0.259488289,pos,ns,0.585882238,0.0000182,0.000228525,0.079489124,0.936694869,pos,ns,0.631292681,Mnx1,Mnx1_Promoter,5,29487691,29487740,29487739,29487740,50,+,TGATCTTTATAAATGTCCCTCTATTAAATTAGAAAATGATTCTCTTCTCG,Promoter (9-10kb),5,29473261,29478470,5210,2,Mnx1-201,-9221,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,6,8,15285,ENSMUSG00000001566,mapped to different genes,5,29487637,29487864,228,*,228,12,0.346491228,1.753846154,0.052631579,0.00000229,CpGisland,TRUE,U13,Hc-P
19325,cg16385223,-0.00000427,0.00000229,-1.863768225,0.063299514,loss,ns,0.0000106,0.00000389,2.72482523,0.006798859,pos,ns,0.004134086,0.001139401,3.628297952,0.000333538,pos,ns,3.476855241,-0.000111101,0.0000392,-2.835380682,0.004877944,neg,ns,0.93802699,Foxp1,Foxp1_Intron,6,99004768,99004817,99004768,99004769,50,+,CGATGGACTCCAGAGAATCCGAGTGGTTAAGAACTGTGAAATGAGTCTGA,"Intron (Foxp1-206/Foxp1, intron 7 of 17)",6,98925338,99266515,341178,2,Foxp1-206,261698,Foxp1-206;Foxp1-204;Foxp1-220;Foxp1-230;Foxp1-225;Foxp1-201;Foxp1-205;Foxp1-207;Foxp1-208;Foxp1-226;Foxp1-228;Foxp1-221;Foxp1-222;Foxp1-210;Foxp1-213;Foxp1-214;Foxp1-209;Foxp1-203,Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,87,108655,ENSMUSG00000030067,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13037,cg02572855,-0.0000159,0.0000112,-1.416346508,0.157678107,loss,ns,0.000052,0.0000191,2.724811171,0.006799142,pos,ns,0.000846083,0.005588642,0.151393386,0.879763878,pos,ns,0.055633873,-0.000033,0.000192193,-0.17155634,0.863898266,neg,ns,0.709972747,Gm44533,Gm44533_Intergenic_downstream,7,69336431,69336480,69336479,69336480,50,-,AGATAAATAGCAGAGTGTCCTCCTCAAAAATATGATTAATACCCTACTCG,Distal Intergenic,7,69259595,69259862,268,1,Gm44533-201,76885,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5680,cg05122695,-0.000107219,0.0000232,-4.61686098,0.00000572,loss,ns,-0.000107502,0.0000395,-2.724791678,0.006799534,neg,ns,0.088028639,0.011558519,7.615909922,3.19E-13,pos,yes,12.49576523,-0.00206907,0.000397497,-5.205252693,0.000000353,neg,yes,0.46952539,Mapkap1,Mapkap1_Intron,2,34535284,34535333,34535284,34535285,50,-,CGTTTGATAACCAGCTCTCTGGATGCCCATCACTGGCCGCAGAGATAGAA,"Intron (Mapkap1-204/Mapkap1, intron 6 of 10)",2,34406862,34623475,216614,1,Mapkap1-204,128422,Mapkap1-204;Mapkap1-202;Mapkap1-201;Mapkap1-209;Mapkap1-203;Mapkap1-207,Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,59,227743,ENSMUSG00000038696,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25996,cg02349046,-0.0000127,0.00000456,-2.771714293,0.005913262,loss,ns,-0.0000211,0.00000776,-2.72464991,0.006802384,neg,ns,0.007767281,0.00227204,3.418637837,0.000713504,pos,ns,3.146603331,-0.0000404,0.0000781,-0.516471243,0.60589354,neg,ns,0.902766515,Kif16b,Kif16b_Exon,2,142846984,142847033,142846984,142846985,50,-,CGGATAAGTTTGACGTTGGCATCCTCATTAATGGTAGGCTTGTTGATGAT,"Exon (Kif16b-205/Kif16b, exon 10 of 27)",2,142617474,142901519,284046,2,Kif16b-205,54486,Kif16b-205;Kif16b-201;Kif16b-203,Kif16b;Kif16b;Kif16b,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,16558,ENSMUSG00000038844,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14258,cg06252174,-0.0000155,0.00000783,-1.975367739,0.049113176,loss,ns,0.0000363,0.0000133,2.724624529,0.006802895,pos,ns,-0.009924095,0.003899185,-2.545171765,0.011406698,neg,ns,1.942840068,0.000296722,0.000134093,2.21281073,0.027639026,pos,ns,0.867997323,Hmgxb4,Hmgxb4_fiveUTR,8,74999571,74999620,74999619,74999620,50,+,GGTGATCATACCTTTGAGGACATAGGACTTGCAGCTGGCCGAAGCCAACG,5' UTR,8,74993356,75031972,38617,1,Hmgxb4-201,6215,Hmgxb4-201;Hmgxb4-207;Hmgxb4-206;Hmgxb4-205;Hmgxb4-208;Hmgxb4-204;Hmgxb4-209,Hmgxb4;Hmgxb4;Hmgxb4;Hmgxb4;Hmgxb4;Hmgxb4;Hmgxb4,0;0;0;5880;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,2,70823,ENSMUSG00000034518,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9872,cg10927916,-0.00000451,0.00000138,-3.272550447,0.001186129,loss,ns,0.00000637,0.00000234,2.724411793,0.006807174,pos,ns,0.000949052,0.0006852,1.38507323,0.167025974,pos,ns,0.777215986,0.0000362,0.0000236,1.537546748,0.125179506,pos,ns,0.051405001,Elf2,Elf2_Intron,3,51276047,51276096,51276095,51276096,50,-,TGCTTTTTCTATGTAACTTAAGTCCGTGCCCTTCCGCTGCAGCAGTGGCG,"Intron (Elf2-212/Elf2, intron 4 of 9)",3,51252720,51340663,87944,2,Elf2-212,64567,Elf2-212;Elf2-208;Elf2-201;Elf2-202;Elf2-203;Elf2-204;Elf2-206;Elf2-213;Elf2-207;Elf2-209;Elf2-211;Elf2-205,Elf2;Elf2;Elf2;Elf2;Elf2;Elf2;Elf2;Elf2;Elf2;Elf2;Elf2;Elf2,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,3,69257,ENSMUSG00000037174,conserved gene and region,3,51276071,51276321,251,*,251,21,0.621513944,0.94125,0.083665339,1.15E-14,CpGisland,TRUE,NA,NRS
20931,cg23758189,0.0000233,0.00000762,3.058052005,0.002422016,gain,ns,-0.0000353,0.0000129,-2.724350473,0.006808408,neg,ns,0.012381714,0.003793087,3.264283728,0.001220089,pos,ns,2.913608555,-0.000522152,0.000130444,-4.002880143,0.0000784,neg,ns,0.793403814,Elp4,Elp4_Intron,2,105720150,105720199,105720198,105720199,50,+,ACACACAGCTAGTTTGGCACAAACGATGTACTCTGAGACTATTTCAAACG,"Intron (Elp4-202/Elp4, intron 9 of 9)",2,105701027,105904564,203538,2,Elp4-202,184365,Elp4-202,Elp4,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,16,77766,ENSMUSG00000027167,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21147,cg27112227,0.0000404,0.0000102,3.952479933,0.0000958,gain,ns,0.0000473,0.0000174,2.723914257,0.006817193,pos,ns,0.029376184,0.005086429,5.775404615,1.87E-08,pos,ns,7.729117083,-0.000795416,0.000174922,-4.547264903,0.0000078,neg,ns,0.225612956,Gm17304,Gm17304_Intron,5,106561006,106561055,106561054,106561055,50,+,TGTTTGATTACACTTTAATAAAGTACAAGAAAACTGTCTGGCTGCCTGCG,"Intron (Gm28050-202/Gm28050-202, intron 1 of 2)",5,106609098,106609201,104,1,Gm17304-201,-48043,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,35,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
24547,cg11254527,-0.0000017,0.00000139,-1.225044905,0.221488297,loss,ns,-0.00000641,0.00000235,-2.723877917,0.006817925,neg,ns,-0.000131868,0.00068966,-0.191206839,0.848488715,neg,ns,0.07135393,-0.00000805,0.0000237,-0.339257119,0.73464575,neg,ns,0.962202568,Zmym4,Zmym4_Exon,4,126877645,126877694,126877693,126877694,50,-,CACAAGTATAAGATACTGTCTGGATCATATTTTTCACCATTTGGTCTCCG,"Exon (Zmym4-204/Zmym4, exon 20 of 24)",4,126861939,126923148,61210,2,Zmym4-204,45454,Zmym4-204;Zmym4-201,Zmym4;Zmym4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,8,67785,ENSMUSG00000042446,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25897,cg20655780,-0.00000995,0.00000311,-3.201929094,0.001506823,loss,ns,0.0000144,0.00000528,2.723740029,0.006820704,pos,ns,0.000869304,0.001547402,0.56178298,0.574669817,pos,ns,0.240581612,-0.0000162,0.0000532,-0.303933095,0.761382765,neg,ns,0.898167033,Chst12,Chst12_Exon,5,140524124,140524173,140524172,140524173,50,+,GGGGCCATCTACTGCTACGTGCCCAAGGTGGCCTGCACCAACTGGAAGCG,"Exon (Chst12-201/Chst12, exon 2 of 2)",5,140505550,140525724,20175,1,Chst12-201,18574,Chst12-201;Chst12-202,Chst12;Chst12,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,59031,ENSMUSG00000036599,conserved gene and region,5,140523793,140524317,525,*,525,32,0.598095238,0.690647482,0.060952381,8.62E-18,CpGisland,TRUE,NA,NRS
1292,cg10254089,-0.0000427,0.000013,-3.290488398,0.001115436,loss,ns,0.0000601,0.0000221,2.723683963,0.006821834,pos,ns,0.006769499,0.006461549,1.047658862,0.295611938,pos,ns,0.529278032,-0.000365344,0.000222212,-1.64412319,0.101164458,neg,ns,0.795832173,Gm11847,Gm11847_Intron,4,12306862,12306911,12306862,12306863,50,-,CGCATATTAATATGCATTTGCTTTGCATGGACTGACATTACAATATTTTC,"Intron (Gm11846-201/Gm11846-201, intron 1 of 2)",4,12232833,12233951,1119,1,Gm11847-201,74078,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,8,545592,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15311,cg02376954,-0.0000208,0.0000117,-1.781827932,0.075756102,loss,ns,-0.0000541,0.0000199,-2.723288567,0.00682981,neg,ns,0.02555874,0.005818255,4.392853251,0.0000154,pos,ns,4.813159191,-0.001651698,0.000200089,-8.254802175,4.43E-15,neg,yes,0.721010842,Dazap1,Dazap1_Exon,10,80280900,80280949,80280948,80280949,50,-,ACCTTGATTCACTCTTCGTCGTTGGCTAGGTTTTGGATTTATTACTTTCG,"Exon (Dazap1-207/Dazap1, exon 7 of 7)",10,80261486,80281005,19520,1,Dazap1-207,19414,Dazap1-207;Dazap1-203;Dazap1-202;Dazap1-201;Dazap1-205;Dazap1-204;Dazap1-206,Dazap1;Dazap1;Dazap1;Dazap1;Dazap1;Dazap1;Dazap1,0;0;0;0;15776;0;-1918,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,6,70248,ENSMUSG00000069565,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U5,En-Sd
22949,cg21954633,-0.0000103,0.00000232,-4.437800721,0.0000127,loss,ns,0.0000108,0.00000395,2.723107534,0.006833465,pos,ns,0.000379523,0.001156875,0.328059035,0.743088489,pos,ns,0.128959466,-0.0000185,0.0000398,-0.465042373,0.6422276,neg,ns,0.959472999,Gm13991,Gm13991_Intergenic_downstream,2,116322452,116322501,116322500,116322501,50,-,GGAAATTTCTTTTTCCCATTTCCTCGTCAGGAGCTGTGAATTTTAGTGCG,Distal Intergenic,2,116527843,116528490,648,2,Gm13991-201,206038,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,14,20,433464,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19598,cg18178230,0.00000244,0.00000807,0.302526012,0.762453993,gain,ns,0.0000373,0.0000137,2.722916951,0.006837315,pos,ns,0.006881619,0.004015236,1.713876691,0.087550981,pos,ns,1.057738983,-0.000179541,0.000138084,-1.300233858,0.194486683,neg,ns,0.710196758,Gm8641,Gm8641_Intron,9,100026022,100026071,100026022,100026023,50,-,CGAATCGCTGAGTTCTACCTGGTTATCTCTTGCCTTGCACATCACTTCCA,"Intron (4930519F24Rik-201/4930519F24Rik-201, intron 2 of 2)",9,99946564,99947389,826,2,Gm8641-201,-78682,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,15,667456,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3854,cg02339457,-0.0000296,0.00000675,-4.392176268,0.0000154,loss,ns,0.0000312,0.0000115,2.722701394,0.006841671,pos,ns,0.007399749,0.003357583,2.203891529,0.028266778,pos,ns,1.548723688,-0.000126215,0.000115467,-1.093083932,0.275205642,neg,ns,0.122937473,Dmrt1,Dmrt1_Intron,19,25602205,25602254,25602253,25602254,50,-,CATTAGTATTAACGATTGGCCATTTGGAATTGGTGACAAACTACTGCCCG,"Intron (Dmrt1-201/Dmrt1, intron 4 of 4)",19,25505618,25604329,98712,1,Dmrt1-201,96587,Dmrt1-201;Dmrt1-202,Dmrt1;Dmrt1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,9,50796,ENSMUSG00000024837,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
26861,cg00174373,0.00000473,0.00000174,2.716575031,0.006966531,gain,ns,0.00000806,0.00000296,2.722658275,0.006842542,pos,ns,0.001853527,0.000867334,2.137040138,0.03337713,pos,ns,1.476551007,0.0000519,0.0000298,1.740128169,0.082828884,pos,ns,0.050728472,4930404H24Rik,4930404H24Rik_Exon,2,153492883,153492932,153492931,153492932,50,+,TCACACAGTAATTAGATACCAGCTGTCAGTGCAGGGGGGACGGCTCCGCG,Promoter (<=1kb),2,153492790,153493841,1052,1,4930404H24Rik-201,93,4930404H24Rik-201;Nol4l-201;Nol4l-203,4930404H24Rik;Nol4l;Nol4l,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,4,78151,NA,mapped to different genes,2,153492923,153493123,201,*,201,27,0.776119403,0.892598684,0.134328358,1.13E-24,CpGisland,TRUE,NA,NRS
8048,cg22446589,0.0000729,0.0000062,11.76391844,1.16E-26,gain,yes,-0.0000287,0.0000105,-2.722353185,0.006848713,neg,ns,0.005889754,0.003083988,1.909784906,0.057083678,pos,ns,1.243488049,-0.0000176,0.000106058,-0.165806776,0.868417094,neg,ns,0.114037589,Pax5,Pax5_Exon,4,44703357,44703406,44703357,44703358,50,-,CGCCGCCTACTTACTATGCATGGATGCAAACGGGTCGTGCTTACAGTGTA,"Exon (Pax5-208/Pax5, exon 1 of 5)",4,44524757,44710487,185731,2,Pax5-201,7081,Pax5-201;Pax5-202;Pax5-203;Pax5-204;Pax5-205;Pax5-207;Pax5-206;Pax5-209;Pax5-210;Pax5-212;Pax5-213;Pax5-214;Pax5-215;Pax5-208;Pax5-216;Pax5-217;Pax5-218;Pax5-219,Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,45,18507,ENSMUSG00000014030,conserved gene but different region,4,44703085,44703505,421,*,421,37,0.617577197,0.926154944,0.087885986,3.03E-26,CpGisland,TRUE,U3,Pr-B
17708,cg03450698,-0.0000327,0.0000167,-1.959136695,0.050992842,loss,ns,0.0000772,0.0000283,2.722230044,0.006851205,pos,ns,-0.012858125,0.00830552,-1.548142015,0.122608356,neg,ns,0.911479929,0.000611565,0.000285626,2.141138458,0.033042415,pos,ns,0.527998331,Zic4,Zic4_Intergenic_downstream,9,91398972,91399021,91399020,91399021,50,-,GTGTGTAATCTTGCAGGCATGTACAGTTTGGGTCATTTCCTCATCTCCCG,Distal Intergenic,9,91382410,91388044,5635,1,Zic4-202,16611,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,55,22774,ENSMUSG00000036972,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6801,cg02864518,-0.0000123,0.00000872,-1.4105259,0.159387093,loss,ns,0.0000403,0.0000148,2.721369912,0.006868634,pos,ns,0.007922443,0.00434184,1.824674272,0.069012552,pos,ns,1.161071914,-0.000243569,0.000149316,-1.631236896,0.103855801,neg,ns,0.886057826,Luc7l2,Luc7l2_Exon,6,38568909,38568958,38568909,38568910,50,-,CGCCAAGCCGTGAGTTATCGCTAACTTTTCAGATGTGTTAATGAATGTGG,"Exon (Luc7l2-209/Luc7l2, exon 4 of 12)",6,38551334,38605040,53707,1,Luc7l2-213,17575,Luc7l2-213;Luc7l2-208;Luc7l2-201;Luc7l2-209;Luc7l2-207;Luc7l2-205;Luc7l2-202;Luc7l2-204;Luc7l2-210;Luc7l2-203,Luc7l2;Luc7l2;Luc7l2;Luc7l2;Luc7l2;Luc7l2;Luc7l2;Luc7l2;Luc7l2;Luc7l2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,10,192196,ENSMUSG00000029823,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11407,cg23650312,0.0000546,0.000019,2.877570803,0.00428571,gain,ns,0.0000878,0.0000323,2.721264608,0.006870771,pos,ns,0.03618268,0.009450149,3.828794514,0.000155815,pos,ns,3.807391163,-0.000622265,0.00032499,-1.914720596,0.056448356,neg,ns,0.545506526,Zic3,Zic3_Exon,X,58033376,58033425,58033424,58033425,50,+,AAATGTGAATTTGAAGGCTGTGACAGACGCTTTGCCAACAGCAGCGACCG,"Exon (Zic3-201/Zic3, exon 2 of 3)",20,58030643,58036559,5917,1,Zic3-201,2733,Zic3-204;Zic3-201;Zic3-203;Zic3-202,Zic3;Zic3;Zic3;Zic3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,17,22773,ENSMUSG00000067860,conserved gene and region,X,58033387,58033635,249,*,249,20,0.546184739,1.096191944,0.080321285,1.23E-13,CpGisland,TRUE,U13,Hc-P
18995,cg15264989,0.000058,0.00000684,8.479582601,9.35E-16,gain,yes,-0.0000316,0.0000116,-2.720501561,0.006886271,neg,ns,-0.008611009,0.003404065,-2.529624822,0.01191373,neg,ns,1.923952234,-0.0000606,0.000117066,-0.517863762,0.604922695,neg,ns,0.783315784,Med1,Med1_threeUTR,11,98153112,98153161,98153112,98153113,50,+,CGGGATTCTTTGATCTGGGATGAAGACAGAAAGAGAGAAAAGCTTCCCAG,3' UTR,11,98152154,98193260,41107,2,Med1-202,40099,Fbxl20-201;Fbxl20-202;Fbxl20-207;Med1-202;Med1-203;Med1-204;Med1-201;Med1-207,Fbxl20;Fbxl20;Fbxl20;Med1;Med1;Med1;Med1;Med1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,13,19014,ENSMUSG00000018160,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4985,cg02374131,-0.00000137,0.00000112,-1.221338167,0.222886025,loss,ns,0.00000519,0.00000191,2.71949469,0.006906771,pos,ns,0.001574745,0.000558663,2.81877149,0.005130828,pos,ns,2.289812553,-0.0000213,0.0000192,-1.107355173,0.268998883,neg,ns,0.967750718,U2af1,U2af1_Exon,17,31652495,31652544,31652543,31652544,50,-,GACTTACAGTGTGAGCCGTCAGCCGTCTGTGCACTGTTTTGGGGATTACG,"Exon (U2af1-202/U2af1, exon 3 of 8)",17,31647081,31658769,11689,2,U2af1-202,6225,U2af1-202;U2af1-201;U2af1-208;U2af1-209;U2af1-206;U2af1-207;U2af1-205;U2af1-203;U2af1-204,U2af1;U2af1;U2af1;U2af1;U2af1;U2af1;U2af1;U2af1;U2af1,0;0;0;0;-3183;0;0;0;6159,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,108121,ENSMUSG00000061613,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23062,cg05635693,0.0000203,0.00000461,4.410732965,0.0000142,gain,ns,-0.0000213,0.00000782,-2.718536307,0.006926336,neg,ns,0.008499374,0.002292334,3.707737854,0.000247682,pos,ns,3.606105541,-0.00031777,0.0000788,-4.030914922,0.00007,neg,ns,0.872153601,Taok3,Taok3_fiveUTR,5,117250911,117250960,117250959,117250960,50,-,GATGTCAGGTTATAAGCGGATGCGGCGCCAGCACCAGAAGCAGCTGATCG,5' UTR,5,117120129,117275217,155089,1,Taok3-203,130782,Taok3-203;Taok3-210;Taok3-201;Taok3-208;Taok3-202,Taok3;Taok3;Taok3;Taok3;Taok3,0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,11,20,330177,ENSMUSG00000061288,conserved gene but different region,5,117250755,117251050,296,*,296,22,0.648648649,0.709368192,0.074324324,3.15E-14,CpGisland,TRUE,U10,Tr-S
8235,cg17273372,-0.0000358,0.00000389,-9.203479034,5.30E-18,loss,yes,0.000018,0.0000066,2.718488628,0.006927311,pos,ns,0.001615948,0.001934657,0.835263167,0.404212819,pos,ns,0.393389917,-0.000000501,0.0000665,-0.007535752,0.993992244,neg,ns,0.099751357,Slf2,Slf2_Intergenic_upstream,19,44893183,44893232,44893231,44893232,50,-,CACTGTCTCTTTAATTAAAGTTCCCTGTTTGGAGGTTAAAGACAAACCCG,Distal Intergenic,19,44931151,44983188,52038,1,Slf2-201,-37968,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,15,17,226151,ENSMUSG00000036097,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1433,cg12505182,-0.00000877,0.00000249,-3.516913328,0.000501838,loss,ns,0.0000115,0.00000424,2.718367912,0.006929779,pos,ns,0.0076902,0.001241465,6.194455201,1.86E-09,pos,ns,8.731173602,-0.000127869,0.0000427,-2.995013407,0.002965523,neg,ns,0.942527768,Pter,Pter_Intergenic_upstream,2,12869002,12869051,12869002,12869003,50,+,CGCACTCTATTCAGAAATGTCACAATTGATTTGTCTTCTGCAAGCACTGA,Distal Intergenic,2,12924041,13000980,76940,1,Pter-205,-54990,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,19212,ENSMUSG00000026730,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27800,cg24128558,-0.00004,0.00000602,-6.637936739,1.42E-10,loss,yes,0.0000278,0.0000102,2.717046375,0.006956852,pos,ns,-0.003440709,0.002995475,-1.148635486,0.251591838,neg,ns,0.599303453,0.0000571,0.000103014,0.554090537,0.579916356,pos,ns,0.751388778,Esrrg,Esrrg_Intergenic_upstream,1,187428812,187428861,187428860,187428861,50,+,CTGCCTCCCCATTAATTCATTTGCAGGAGACACCTGTGCCAATAACCTCG,Distal Intergenic,1,187608791,188043502,434712,1,Esrrg-204,-179930,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,60,26381,ENSMUSG00000026610,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24856,cg17973684,0.0000124,0.00000669,1.849467117,0.065342124,gain,ns,0.0000309,0.0000114,2.716825749,0.006961381,pos,ns,0.014326082,0.003330938,4.300914577,0.0000228,pos,ns,4.641689393,-0.000465933,0.000114551,-4.067480871,0.0000603,neg,ns,0.838726698,Azin2,Azin2_Exon,4,128948905,128948954,128948905,128948906,50,-,CGATGGACTGAGCATAGGCCTGAGGGTCAGGACAGCCACTGCCAATGTGA,"Exon (Azin2-203/Azin2, exon 5 of 9)",4,128930233,128962420,32188,2,Azin2-203,13466,Azin2-203;Azin2-202;Azin2-201;Azin2-204;Azin2-206;Azin2-205,Azin2;Azin2;Azin2;Azin2;Azin2;Azin2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,242669,ENSMUSG00000028789,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13675,cg21908704,-0.000000954,0.00000265,-0.360326458,0.718848397,loss,ns,0.0000122,0.0000045,2.71672168,0.006963518,pos,ns,0.000475112,0.001317841,0.36052324,0.718701409,pos,ns,0.143451504,0.0000449,0.0000453,0.991004918,0.322456057,pos,ns,0.944132207,Tcf12,Tcf12_threeUTR,9,72000472,72000521,72000472,72000473,50,-,CGACTGTCATTCAAGTGATCACTGTAATGAGGGCTGTCTGTAAAACCCTA,Promoter (<=1kb),9,71882732,72000476,117745,2,Tcf12-214,0,Tcf12-202;Tcf12-201;Tcf12-220;Tcf12-221;Tcf12-218;Tcf12-216;Tcf12-208;Tcf12-210;Tcf12-214;Tcf12-205;Tcf12-203;Tcf12-211;Tcf12-204;Tcf12-212,Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,12,21406,ENSMUSG00000032228,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13292,cg12041712,-0.00000686,0.00000478,-1.436129179,0.15197392,loss,ns,-0.000022,0.00000811,-2.716628841,0.006965425,neg,ns,-0.007449486,0.002376782,-3.134273399,0.001887666,neg,ns,2.724074825,0.0000454,0.0000817,0.555119597,0.579213191,pos,ns,0.845344397,Acadvl,Acadvl_threeUTR,11,70012060,70012109,70012060,70012061,50,+,CGCATCCCCTAGGGCATTGGTGTAAAGCTGGAGACCCACTGCCCCAGGTG,3' UTR,11,70010183,70015408,5226,2,Acadvl-202,3299,Acadvl-202;Acadvl-203;Acadvl-201;Acadvl-206;Acadvl-207;Acadvl-204;Acadvl-205;Dlg4-217;Dlg4-205;Dlg4-204;Dvl2-201;Dvl2-202;Dvl2-207;Dvl2-205;Dvl2-206,Acadvl;Acadvl;Acadvl;Acadvl;Acadvl;Acadvl;Acadvl;Dlg4;Dlg4;Dlg4;Dvl2;Dvl2;Dvl2;Dvl2;Dvl2,0;-1149;0;0;3268;3302;3290;0;0;0;11465;0;0;6602;5080,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,1,11370,ENSMUSG00000018574,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1039,cg26155557,-0.0000108,0.00000925,-1.167079786,0.244075094,loss,ns,0.0000427,0.0000157,2.716186768,0.006974513,pos,ns,-0.001805835,0.004603732,-0.392254628,0.695139629,neg,ns,0.157927952,-0.0000245,0.000158322,-0.155011538,0.876913099,neg,ns,0.626078285,Gm14485,Gm14485_Intergenic_upstream,X,11106626,11106675,11106626,11106627,50,-,CGTGAAGAAAATAGGATAATGAATATGATAATATATGGGGAGTGCTTTGG,Distal Intergenic,20,11020515,11021007,493,2,Gm14485-201,-85668,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,9,547156,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27925,cg15466600,0.0000396,0.0000118,3.350046576,0.00090782,gain,ns,0.0000546,0.0000201,2.715772673,0.006983035,pos,ns,-0.002772047,0.005889654,-0.470663822,0.638211815,neg,ns,0.19503516,0.00049547,0.000202545,2.446226353,0.014991525,pos,ns,0.661048577,Prox1,Prox1_Intergenic_upstream,1,190375275,190375324,190375275,190375276,50,+,CGCTGCGTTTCAAGTGTCAATCAAAAAGGAAGGACGCAGCTTAGGTCCTG,Distal Intergenic,1,190118035,190170714,52680,2,Prox1-202,-204561,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,13,59,19130,ENSMUSG00000010175,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9522,cg26059407,-0.00000539,0.00000268,-2.012130748,0.045070909,loss,ns,0.0000123,0.00000455,2.715137216,0.006996131,pos,ns,0.00181791,0.001332043,1.364753063,0.173320428,pos,ns,0.761150248,-0.000138553,0.0000458,-3.024592463,0.002697904,neg,ns,0.936846059,Grik2,Grik2_threeUTR,10,49099832,49099881,49099880,49099881,50,+,CCTTTTTTCTTGATAAAAATAGTTTTCACCAAACGTTGGTGGTGCACACG,3' UTR,10,49094833,49788766,693934,2,Grik2-207,688885,Grik2-207;Grik2-203;Grik2-202;Grik2-205;Grik2-209;Grik2-204;Grik2-211,Grik2;Grik2;Grik2;Grik2;Grik2;Grik2;Grik2,0;0;0;0;0;0;4050,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,12,14806,ENSMUSG00000056073,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2218,cg04261763,-0.0000049,0.00000385,-1.273102691,0.203935479,loss,ns,0.0000177,0.00000654,2.714596011,0.007007302,pos,ns,0.00353341,0.001915568,1.84457584,0.066053153,pos,ns,1.180106444,-0.000100711,0.0000659,-1.528784799,0.127337508,neg,ns,0.901984927,Gm37317,Gm37317_Intergenic_upstream,3,18640472,18640521,18640520,18640521,50,-,CTGTTCCATGCTGCAAGGGACATATTTATGGACATACTTTCAACAAGACG,Distal Intergenic,3,18609808,18610831,1024,2,Gm37317-201,-29690,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,10,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13959,cg11043893,-0.00000791,0.00000196,-4.042384826,0.0000668,loss,ns,0.00000903,0.00000333,2.714372046,0.007011929,pos,ns,-0.000863964,0.000974154,-0.886886586,0.375827482,neg,ns,0.425011465,0.0000265,0.0000335,0.790394916,0.429901387,pos,ns,0.945327944,Robo2,Robo2_Intergenic_downstream,16,73785021,73785070,73785069,73785070,50,-,ATGCTTCCTTTAATTAATGCAACACTACTGCATTAGTCCGGACACTGCCG,Distal Intergenic,16,73894664,73899885,5222,2,Robo2-208,114864,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,11,268902,ENSMUSG00000052516,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16095,cg26386718,0.0000227,0.00000354,6.419339671,5.13E-10,gain,yes,-0.0000163,0.00000601,-2.714091052,0.007017739,neg,ns,0.000107656,0.001759475,0.061186173,0.951250369,pos,ns,0.021705162,-0.0000171,0.0000605,-0.281851998,0.77824506,neg,ns,0.932175441,Acaca,Acaca_Intron,11,84388875,84388924,84388923,84388924,50,+,GCTTAGCTTTTTACAATAGTCCAGTGAATAAGAAATGCTCCTGACAAACG,"Intron (Acaca-202/Acaca, intron 52 of 55)",11,84173122,84401651,228530,1,Acaca-202,215753,Acaca-202;Acaca-201,Acaca;Acaca,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,28,28,107476,ENSMUSG00000020532,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27776,cg16193928,0.000021,0.00000834,2.51963484,0.012250038,gain,ns,0.0000385,0.0000142,2.713799701,0.007023768,pos,ns,0.008950684,0.004152318,2.155586985,0.031885316,pos,ns,1.496409268,-0.000063,0.000142798,-0.441243032,0.659344651,neg,ns,0.479227092,Rrp15,Rrp15_Intergenic_upstream,1,186842984,186843033,186843032,186843033,50,-,AAGGTTACCACCGGCAGATTTGTTCCCATGATCAATCTGGTCAATAACCG,Distal Intergenic,1,186720978,186749358,28381,2,Rrp15-201,-93675,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,11,67223,ENSMUSG00000001305,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13881,cg20560916,0.0000325,0.00000355,9.138693269,8.50E-18,gain,yes,-0.0000164,0.00000604,-2.713577357,0.007028372,neg,ns,0.001121008,0.001768348,0.633929461,0.526594328,pos,ns,0.278523823,-0.000054,0.0000608,-0.887215239,0.375650826,neg,ns,0.877793093,Ptk2,Ptk2_Exon,15,73257115,73257164,73257163,73257164,50,-,GTAGGAGGACAATTTGGAGGCATTGGTAATCTTTCCCCATTTTCAATTCG,"Exon (Ptk2-208/Ptk2, exon 23 of 34)",15,73205102,73423128,218027,2,Ptk2-208,165964,Ptk2-208;Ptk2-201;Ptk2-216;Ptk2-211;Ptk2-215;Ptk2-204,Ptk2;Ptk2;Ptk2;Ptk2;Ptk2;Ptk2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,5,14083,ENSMUSG00000022607,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25135,cg08608204,-0.0000417,0.0000124,-3.368953523,0.000849838,loss,ns,-0.0000571,0.000021,-2.713561424,0.007028702,neg,ns,0.054777571,0.006161464,8.890350306,5.12E-17,pos,yes,16.29107054,-0.002355852,0.000211892,-11.11816326,2.16E-24,neg,yes,0.720061668,Ahdc1,Ahdc1_Intron,4,133047498,133047547,133047498,133047499,50,+,CGCCTTGGCAACTGGAGCCCGGTAGGCCTGGGCTCTGCGTTAGGATTACA,"Intron (Ahdc1-210/Ahdc1, intron 2 of 3)",4,133011260,133060820,49561,1,Ahdc1-210,36238,Ahdc1-210;Ahdc1-203;Ahdc1-204;Ahdc1-205;Ahdc1-207;Ahdc1-211;Ahdc1-209;Ahdc1-206;Ahdc1-201;Ahdc1-202,Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,35,49,230793,ENSMUSG00000037692,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3816,cg02487354,0.00000169,0.00000609,0.277410146,0.781650094,gain,ns,0.0000281,0.0000104,2.713192834,0.00703634,pos,ns,0.00794076,0.003033024,2.618099765,0.009276211,pos,ns,2.032629364,-0.00020037,0.000104305,-1.920996435,0.05564908,neg,ns,0.86555947,Celf4,Celf4_Exon,18,25504176,25504225,25504224,25504225,50,+,GCCATGGGGTTGAACATGCCCATCTGGCCAGCCATCTGCTGCATTCGCCG,"Exon (Celf4-202/Celf4, exon 6 of 13)",18,25477632,25753983,276352,2,Celf4-202,249758,Celf4-202;Celf4-201;Celf4-203;Celf4-207;Celf4-206;Celf4-210;Celf4-209,Celf4;Celf4;Celf4;Celf4;Celf4;Celf4;Celf4,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,31,59,108013,ENSMUSG00000024268,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
24611,cg06471283,0.0000173,0.0000205,0.845208204,0.398646463,gain,ns,0.0000943,0.0000348,2.712581591,0.007049023,pos,ns,0.03097838,0.01018515,3.041524058,0.002554879,pos,ns,2.592629609,-0.00055433,0.000350266,-1.582593952,0.114533697,neg,ns,0.46357018,Dlgap3,Dlgap3_Exon,4,127214383,127214432,127214383,127214384,50,-,CGCCCTGGACCTGCCCGGCTGTTTCCGCATGCGGAGCCACAGCTACCTCC,"Exon (Dlgap3-201/Dlgap3, exon 6 of 12)",4,127169204,127237022,67819,1,Dlgap3-201,45179,Dlgap3-201;Dlgap3-203;Dlgap3-202;Dlgap3-204,Dlgap3;Dlgap3;Dlgap3;Dlgap3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,7,242667,ENSMUSG00000042388,conserved gene and region,4,127214311,127214465,155,*,155,13,0.664516129,0.760377359,0.083870968,0.000000003,CpGisland,TRUE,NA,NRS
2235,cg04246600,0.000000169,0.00000482,0.03505254,0.972060405,gain,ns,0.0000222,0.00000819,2.71159689,0.007069499,pos,ns,0.011916497,0.002399503,4.966234838,0.00000113,pos,ns,5.947061228,-0.00040255,0.0000825,-4.878289273,0.00000171,neg,yes,0.850932175,Gm30341,Gm30341_Intergenic_upstream,3,18714377,18714426,18714425,18714426,50,+,TGTTAGCGAATTGCTCGGGTCTGCTTACTTTATTATCTAGATCACAAACG,Distal Intergenic,3,18753077,18753365,289,1,Gm30341-201,-38651,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,17,23,102632201,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1317,cg16328413,0.0000277,0.0000041,6.753320343,7.14E-11,gain,yes,-0.0000189,0.00000697,-2.710990459,0.007082136,neg,ns,0.000988552,0.002041694,0.484182225,0.628598431,pos,ns,0.201626707,0.0000544,0.0000702,0.774506701,0.439221517,pos,ns,0.114295515,Fezf2,Fezf2_fiveUTR,14,12345618,12345667,12345618,12345619,50,-,CGAGCCATGCAGCGTGTCTCTTCTGTCACATTTTGATGGCAAACATCTTC,Promoter (<=1kb),14,12342094,12345844,3751,2,Fezf2-203,177,Fezf2-203;Fezf2-201;Fezf2-202,Fezf2;Fezf2;Fezf2,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,13,45,54713,ENSMUSG00000021743,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
18556,cg25558655,0.000021,0.0000061,3.443479338,0.000653271,gain,ns,0.0000281,0.0000104,2.710981774,0.007082317,pos,ns,0.005825547,0.003038244,1.917406239,0.056105151,pos,ns,1.250997265,0.000117415,0.000104485,1.123750395,0.261988387,pos,ns,0.115402492,Hoxb7,Hoxb7_fiveUTR,11,96286670,96286719,96286718,96286719,50,+,AGGAATCTCGTAAAACCGACACTAAAACGTCCCTGCCTACAAATCATCCG,Promoter (<=1kb),11,96286623,96290162,3540,1,Hoxb7-201,47,Hoxb7-201;Hoxb7-202;Hoxb8-201;Hoxb8-202;Hoxb8-203,Hoxb7;Hoxb7;Hoxb8;Hoxb8;Hoxb8,0;-1996;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,8,15415,ENSMUSG00000038721,conserved gene and region,11,96286678,96287286,609,*,609,56,0.622331691,0.952625698,0.091954023,1.47E-40,CpGisland,TRUE,U3,Pr-B
10160,cg01370449,0.00018894,0.0000146,12.92100002,7.56E-31,gain,yes,-0.0000673,0.0000248,-2.710577543,0.007090752,neg,ns,0.017945407,0.007277869,2.465750236,0.014213884,pos,ns,1.847287246,-0.000491227,0.000250285,-1.962669778,0.050578612,neg,ns,0.186651121,Gm28308,Gm28308_fiveUTR,6,52204445,52204494,52204493,52204494,50,+,GGGACATGTACTTGGTTCCCTCCTACGTAGGCACCCAAATATGGGGTACG,5' UTR,6,52163359,52213339,49981,2,Gm28308-201,8845,Gm28308-201;Hoxa3-201;Hoxa3-203;Hoxa5-201;Hoxa6-201,Gm28308;Hoxa3;Hoxa3;Hoxa5;Hoxa6,0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,21,103,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
8299,cg25922845,-0.0000015,0.000000858,-1.751366007,0.080871845,loss,ns,0.00000395,0.00000146,2.710575168,0.007090802,pos,ns,0.001448591,0.000427206,3.390848846,0.00078701,pos,ns,3.104019551,-0.0000314,0.0000147,-2.13824741,0.033278229,neg,ns,0.971936317,Zeb2,Zeb2_threeUTR,2,44987911,44987960,44987959,44987960,50,+,TATTTCTCATCTTACTTTTTCCTTCACGTCCAGGTCACTTTAAGACTTCG,3' UTR,2,44983632,45117395,133764,2,Zeb2-212,129435,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,10,158,24136,ENSMUSG00000026872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10672,cg16384721,0.00000849,0.0000113,0.751313707,0.453033853,gain,ns,0.000052,0.0000192,2.710315121,0.007096233,pos,ns,0.011080715,0.00562376,1.970339275,0.049689158,pos,ns,1.30373836,0.000238119,0.000193401,1.231221017,0.219173462,pos,ns,0.828441358,Unc5a,Unc5a_Intergenic_upstream,13,54936348,54936397,54936348,54936349,50,-,CGCTGTGCTGGAGCCAGCAAAGTGGCTCAGCTTCAAACCCAGGGCAGCTG,Distal Intergenic,13,54949411,55006018,56608,1,Unc5a-202,-13063,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,12,107448,ENSMUSG00000025876,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7713,cg04975338,0.0000282,0.00000726,3.883113049,0.000126067,gain,ns,-0.0000334,0.0000123,-2.710119091,0.00710033,neg,ns,-0.006464906,0.003613699,-1.788999555,0.074591113,neg,ns,1.127312912,0.0000491,0.000124275,0.395435401,0.692793566,pos,ns,0.860439317,Ccdc191,Ccdc191_Exon,16,43906937,43906986,43906937,43906938,50,+,CGTCTTACCATGGAGATGAGACATAAGCAGGTGGGAGGGAAAAACAAAAT,"Exon (Ccdc191-203/Ccdc191, exon 5 of 17)",16,43889800,43964314,74515,1,Ccdc191-203,17137,Ccdc191-203;Ccdc191-206;Ccdc191-201;Ccdc191-205;Qtrt2-207,Ccdc191;Ccdc191;Ccdc191;Ccdc191;Qtrt2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,212153,ENSMUSG00000022701,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27505,cg26177197,0.0000628,0.0000206,3.042281298,0.002548649,gain,ns,0.000095,0.0000351,2.709603739,0.00711111,pos,ns,0.018676495,0.010271727,1.818242887,0.069991998,pos,ns,1.154951612,0.000288164,0.000353244,0.815765767,0.415260464,pos,ns,0.517255559,Pbx1,Pbx1_Intergenic_upstream,1,168676856,168676905,168676904,168676905,50,-,TAATTTGCATTAATAAAGAGGCTGTTCCTTGTCGGAATGTGTTTCATCCG,Distal Intergenic,1,168119364,168432270,312907,2,Pbx1-208,-244635,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,17,84,18514,ENSMUSG00000052534,conserved gene and region,1,168676888,168677048,161,*,161,10,0.527950311,0.897435897,0.062111801,0.00000521,CpGisland,TRUE,U15,NS
14458,cg17106054,0.00000961,0.00000322,2.990465203,0.003008768,gain,ns,-0.0000148,0.00000546,-2.708881948,0.007126232,neg,ns,-0.001552434,0.001600145,-0.970183316,0.332711472,neg,ns,0.477932225,0.0000151,0.000055,0.274803408,0.783650331,pos,ns,0.924677893,Zc3h3,Zc3h3_Intron,15,75756272,75756321,75756272,75756273,50,-,CGCGGAGAGCTGTAAAATGTTTACAGAAAGGGTCGTTTGCAGCCATAAAA,"Intron (Zc3h3-201/Zc3h3, intron 11 of 11)",15,75754430,75841915,87486,2,Zc3h3-201,85594,Zc3h3-201,Zc3h3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,18,223642,ENSMUSG00000075600,conserved gene and region,15,75756178,75756306,129,*,129,12,0.488372093,1.592592593,0.093023256,4.32E-09,CpGisland,TRUE,NA,NRS
14894,cg02042055,-0.0000107,0.00000697,-1.534380187,0.125956077,loss,ns,0.0000321,0.0000118,2.708732495,0.007129367,pos,ns,0.002600405,0.003469087,0.749593368,0.454068108,pos,ns,0.342879,0.0000238,0.000119302,0.199491179,0.842009331,pos,ns,0.933755691,Cacng2,Cacng2_Exon,15,78118837,78118886,78118837,78118838,50,+,CGAAAGCACCAACGGTGGTTAAAAGCATTTGAACACCTCGATCAAACAGC,"Exon (Cacng2-201/Cacng2, exon 1 of 4)",15,77991748,78120028,128281,2,Cacng2-201,1142,Cacng2-201,Cacng2,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,6,12300,ENSMUSG00000019146,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
18936,cg15509914,-0.0000119,0.00000591,-2.020795757,0.044160312,loss,ns,0.0000272,0.00001,2.708583949,0.007132485,pos,ns,0.004684392,0.002942598,1.59192418,0.112420894,pos,ns,0.949152967,-0.00025541,0.000101196,-2.523923598,0.012104638,neg,ns,0.880705476,Dach1,Dach1_Exon,14,97969828,97969877,97969828,97969829,50,-,CGTTTTCAGAGTCTGCTCCATGTTGGTTATTACTGGCATGATAGTTGCTC,"Exon (Dach1-201/Dach1, exon 3 of 11)",14,97786853,98169543,382691,2,Dach1-201,199666,Dach1-201;Dach1-202;Dach1-203,Dach1;Dach1;Dach1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,76,13134,ENSMUSG00000055639,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15882,cg18334734,0.00000322,0.0000113,0.285136057,0.775730311,gain,ns,0.0000519,0.0000192,2.708508271,0.007134073,pos,ns,-0.001544783,0.005612325,-0.275248218,0.783308911,neg,ns,0.106066933,0.000146057,0.000193007,0.756741292,0.449779605,pos,ns,0.702734822,Gm6411,Gm6411_Intron,13,83741906,83741955,83741954,83741955,50,+,AATATGGGTAACCAGTGAATGACCAAGTTTCATTGTGCCCGCTTAAGTCG,"Intron (C130071C03Rik-204/C130071C03Rik-204, intron 3 of 3)",13,83761132,83762335,1204,2,Gm6411-201,20380,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,36,623241,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
7796,cg01973478,-0.000000172,0.00000252,-0.068320054,0.945574906,loss,ns,0.0000116,0.00000428,2.708370177,0.007136973,pos,ns,0.003521052,0.001254095,2.807643123,0.005306863,pos,ns,2.275162111,-0.0000814,0.0000431,-1.886467323,0.060166475,neg,ns,0.938797298,Arhgap15,Arhgap15_Intron,2,44341448,44341497,44341448,44341449,50,+,CGGCTAGAACAGGGCCAGCTCTGGACGGCACATGTTCAAGTGACGAAAAA,"Intron (Arhgap15-203/Arhgap15, intron 13 of 14)",2,43748824,44395953,647130,1,Arhgap15-203,592624,Arhgap15-203;Arhgap15-202;Arhgap15-201,Arhgap15;Arhgap15;Arhgap15,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,72,78,76117,ENSMUSG00000049744,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6875,cg12949849,0.0000041,0.00000457,0.897805918,0.369985777,gain,ns,-0.000021,0.00000777,-2.706861813,0.007168713,neg,ns,0.000325387,0.002275011,0.143026615,0.886362082,pos,ns,0.052388831,-0.0000812,0.0000782,-1.037417862,0.300349673,neg,ns,0.90671594,Ppp6c,Ppp6c_threeUTR,2,39197381,39197430,39197381,39197382,50,+,CGTTCTGAATCTGGAACTGCCCGGAATAACTTTGGTTCTCTTGTATTTAC,3' UTR,2,39194354,39226451,32098,2,Ppp6c-201,29021,Ppp6c-201;Ppp6c-203;Ppp6c-205;Ppp6c-202;Ppp6c-204,Ppp6c;Ppp6c;Ppp6c;Ppp6c;Ppp6c,0;0;0;3560;28602,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,67857,ENSMUSG00000026753,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26968,cg06619487,0.0000542,0.000013,4.164402382,0.0000405,gain,ns,0.0000599,0.0000221,2.706350607,0.007179499,pos,ns,0.025075307,0.006479437,3.869982357,0.000132721,pos,ns,3.877061377,-0.000450081,0.000222827,-2.019863785,0.044257497,neg,ns,0.321755201,Ptchd1,Ptchd1_fiveUTR,X,155623275,155623324,155623275,155623276,50,+,CGTCCTCAAGCCCCTGTGCAGAACCTGCCGCAGCATCCTAGAGCAGAGCG,Promoter (<=1kb),20,155573455,155623325,49871,2,Ptchd1-201,1,Gm15155-202;Gm15155-201;Ptchd1-201;Ptchd1-203;Ptchd1-202,Gm15155;Gm15155;Ptchd1;Ptchd1;Ptchd1,-1417;-1451;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,11,211612,ENSMUSG00000041552,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
6701,cg11645949,0.000109768,0.0000167,6.562781464,2.22E-10,gain,yes,-0.0000769,0.0000284,-2.705898125,0.007189058,neg,ns,0.066304214,0.008324588,7.96486447,3.17E-14,pos,yes,13.49871383,-0.001971732,0.000286282,-6.887379863,3.17E-11,neg,yes,0.634073087,Dennd1a,Dennd1a_threeUTR,2,38126578,38126627,38126578,38126579,50,-,CGAATCTCTGTTTGCTGTCAATGTCAGTGAGCACGAATGTGAAGTTCTGG,3' UTR,2,37798991,38287375,488385,2,Dennd1a-201,160748,Dennd1a-201;Dennd1a-207;Dennd1a-210;Dennd1a-204;Dennd1a-202;Dennd1a-209;Dennd1a-208,Dennd1a;Dennd1a;Dennd1a;Dennd1a;Dennd1a;Dennd1a;Dennd1a,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,46,227801,ENSMUSG00000035392,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13812,cg17950076,0.0000894,0.0000149,6.011121038,5.17E-09,gain,yes,-0.0000684,0.0000253,-2.705707311,0.007193092,neg,ns,0.014078373,0.007405346,1.901109591,0.05821485,pos,ns,1.234966217,-0.000499861,0.000254669,-1.962785396,0.050565105,neg,ns,0.354978504,Sp3,Sp3_Exon,2,72970906,72970955,72970954,72970955,50,-,CAAATGTCCGTCGGCATTAATGCCTGCAGTCATTGTCTGAGAACTGCCCG,"Exon (Sp3-202/Sp3, exon 4 of 7)",2,72936427,72980446,44020,2,Sp3-202,9491,Gm11084-201;Sp3-202;Sp3-201;Sp3-204;Sp3-205,Gm11084;Sp3;Sp3;Sp3;Sp3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,6,20687,ENSMUSG00000027109,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23248,cg09267964,0.000110539,0.0000149,7.400932246,1.28E-12,gain,yes,-0.0000686,0.0000254,-2.70530367,0.007201634,neg,ns,0.024596435,0.00743368,3.308782893,0.001047386,pos,ns,2.97989325,-0.002615115,0.000255644,-10.22953348,2.36E-21,neg,yes,0.500322586,Eri3,Eri3_Intron,4,117605198,117605247,117605198,117605199,50,-,CGAGGCAGCCTGTCTCTTTGTTAACAGAGTGACAGCAATGTGACACCATG,"Intron (Eri3-201/Eri3, intron 6 of 8)",4,117550365,117674297,123933,1,Eri3-201,54833,Eri3-201;Eri3-206;Eri3-202;Eri3-204,Eri3;Eri3;Eri3;Eri3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,82,97,140546,ENSMUSG00000033423,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20345,cg15129083,0.000111664,0.00000655,17.04754626,1.95E-46,gain,yes,-0.0000301,0.0000111,-2.704791175,0.007212492,neg,ns,0.0036894,0.003260068,1.131694275,0.258637653,pos,ns,0.58730825,0.0000766,0.000112113,0.683123869,0.495038787,pos,ns,0.212484802,Hoxc5,Hoxc5_Exon,15,103009772,103009821,103009772,103009773,50,-,CGCCACAGGAGAATGTCGTGTTCAGTTCCAGCCGGGGGCCGTATGACTAT,"Exon (Hoxc6-202/Hoxc6, exon 2 of 3)",15,102967443,103015676,48234,1,Hoxc5-202,42329,Hoxc5-202;Hoxc5-201;Hoxc6-202;Hoxc6-203;Hoxc6-201,Hoxc5;Hoxc5;Hoxc6;Hoxc6;Hoxc6,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,72,134,15424,ENSMUSG00000022485,mapped to different genes,15,103009647,103009812,166,*,166,14,0.602409639,0.948184415,0.084337349,5.77E-10,CpGisland,TRUE,U13,Hc-P
15748,cg15800651,-0.00000263,0.00000223,-1.175344969,0.240758657,loss,ns,0.0000103,0.00000379,2.704786933,0.007212582,pos,ns,0.002468901,0.001111722,2.220789884,0.027087711,pos,ns,1.567227693,-0.0000597,0.0000382,-1.561982313,0.119312404,neg,ns,0.958709105,Gm48156,Gm48156_Intron,13,83133089,83133138,83133137,83133138,50,-,CAGAACTTGAACTGGGAAAGGCTCAAGTTCACTTCTAAACTGAAAACCCG,"Intron (2310067P03Rik-201/2310067P03Rik-201, intron 3 of 3)",13,83189565,83189709,145,2,Gm48156-201,56620,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,16,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9378,cg20044019,-0.00000209,0.00000406,-0.514227812,0.607459102,loss,ns,-0.0000186,0.00000689,-2.704623055,0.007216057,neg,ns,-0.003798196,0.00201936,-1.880890793,0.06092395,neg,ns,1.215211949,0.000086,0.0000694,1.238473492,0.216477546,pos,ns,0.894430435,Tex10,Tex10_Exon,4,48468785,48468834,48468785,48468786,50,+,CGTATTTTGGGGGCCAGGAATTGAAGAAGTTGAACTGCTGCTAATCGTAC,Promoter (<=1kb),4,48430858,48468924,38067,2,Tex10-205,90,Tex10-205;Tex10-201;Tex10-206;Tex10-204;Tex10-202,Tex10;Tex10;Tex10;Tex10;Tex10,0;0;0;0;4509,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,269536,ENSMUSG00000028345,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
42,cg17230964,-0.00000948,0.0000042,-2.258572921,0.02460473,loss,ns,-0.0000193,0.00000713,-2.704366877,0.007221492,neg,ns,-0.004874672,0.002089211,-2.333259426,0.020273798,neg,ns,1.693064884,-0.0000318,0.0000718,-0.441980757,0.658811301,neg,ns,0.891080146,Smtn,Smtn_Exon,11,3520869,3520918,3520869,3520870,50,-,CGCACCATGTCCTCTGTATCCAGGAGCTGCGGGCAGTCCGCATGGGTCCT,"Exon (Smtn-201/Smtn, exon 8 of 9)",11,3517523,3527937,10415,2,Smtn-201,7019,Selenom-202;Selenom-203;Selenom-201;Smtn-201;Smtn-204;Smtn-203;Smtn-208;Smtn-202;Smtn-210;Smtn-206,Selenom;Selenom;Selenom;Smtn;Smtn;Smtn;Smtn;Smtn;Smtn;Smtn,6185;6167;6002;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,6,29856,ENSMUSG00000020439,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6389,cg10354132,-0.0000236,0.0000125,-1.884266766,0.06046444,loss,ns,0.0000575,0.0000213,2.704170967,0.007225651,pos,ns,-0.004135722,0.006227152,-0.664143431,0.507092182,neg,ns,0.294913085,0.000122064,0.000214151,0.569988123,0.569098594,pos,ns,0.786073038,Tenm2,Tenm2_Intron,11,37107374,37107423,37107374,37107375,50,+,CGTGAGATTCAACTGGCAATATTAAAGAATTAATTATAATGAAAATGCAA,"Intron (Tenm2-202/Tenm2, intron 2 of 30)",11,36006656,37235882,1229227,2,Tenm2-202,128459,Tenm2-202;Tenm2-207,Tenm2;Tenm2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,47,84,23964,ENSMUSG00000049336,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9433,cg08933909,-0.000037,0.0000104,-3.546756366,0.000450262,loss,ns,0.000048,0.0000177,2.704148794,0.007226122,pos,ns,-0.005909592,0.005197687,-1.136965863,0.256430634,neg,ns,0.591030093,0.000182993,0.000178748,1.02374899,0.306752056,pos,ns,0.466985983,Zbtb16,Zbtb16_Intron,9,48736669,48736718,48736717,48736718,50,-,AACGAGGGGGCTCTAAAGCCTCGATGCTCTACAGGAAGCAAAATCTGTCG,"Intron (Zbtb16-201/Zbtb16, intron 3 of 6)",9,48654297,48835945,181649,2,Zbtb16-201,99227,Zbtb16-201;Zbtb16-202,Zbtb16;Zbtb16,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,37,235320,ENSMUSG00000066687,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
10538,cg09750164,0.000038,0.0000152,2.497374642,0.013029985,gain,ns,0.00007,0.0000259,2.704018199,0.007228896,pos,ns,0.020552261,0.007581288,2.710919348,0.007083619,pos,ns,2.149744781,-0.000423216,0.00026072,-1.623259477,0.105550361,neg,ns,0.167492549,Npas3,Npas3_Exon,12,54068837,54068886,54068837,54068838,50,-,CGTTAACAGCCCCGGCTTTGGCCTCGACCCCAAGACGCCCATGGAGATGC,"Exon (Npas3-204/Npas3, exon 11 of 11)",12,53248157,54069532,821376,1,Npas3-204,820680,Npas3-204;Npas3-201;Npas3-203,Npas3;Npas3;Npas3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,13,103,27386,ENSMUSG00000021010,conserved gene and region,12,54068813,54069166,354,*,354,27,0.587570622,0.897717667,0.076271186,1.24E-17,CpGisland,TRUE,U13,Hc-P
18003,cg23679105,0.0000559,0.0000147,3.789598491,0.000181281,gain,ns,0.0000677,0.0000251,2.703996369,0.00722936,pos,ns,0.01385914,0.0073404,1.888063266,0.059951144,pos,ns,1.222202527,-0.0000752,0.000252436,-0.29798174,0.765916711,neg,ns,0.684843708,Arx,Arx_Intergenic_downstream,X,93300099,93300148,93300147,93300148,50,-,GAAATTACCTCCAAGGATTACATTTATTACTGGCCAATGAGAACCCCTCG,Downstream (1-2kb),20,93286510,93298062,11553,1,Arx-202,13638,Arx-201;Arx-202;Pola1-201,Arx;Arx;Pola1,0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,8,32,11878,ENSMUSG00000035277,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
13537,cg11413973,-0.0000603,0.0000139,-4.353622579,0.0000182,loss,ns,0.0000637,0.0000235,2.703831394,0.007232866,pos,ns,0.016082324,0.006896827,2.331843828,0.020349228,pos,ns,1.691452055,-0.000361434,0.000237181,-1.523872228,0.1285601,neg,ns,0.826341336,Gm10172,Gm10172_Intergenic_downstream,7,71198505,71198554,71198553,71198554,50,+,AACCCAAGCACTCAATCAAACCTGTTATTCTGTGGCTAAACAGCCTGGCG,Distal Intergenic,7,71332363,71332921,559,2,Gm10172-201,134367,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,31,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3069,cg05244071,0.000041,0.0000176,2.333303209,0.020271469,gain,ns,-0.0000807,0.0000299,-2.702916929,0.007252326,neg,ns,0.003149061,0.008746846,0.360022484,0.719075473,pos,ns,0.143225525,-0.000183757,0.000300803,-0.610885926,0.541722743,neg,ns,0.226706667,Lrmda,Lrmda_Intron,14,22514797,22514846,22514845,22514846,50,-,AGCTCAAGAGGTTTAATTTGCATGTGTTGCCTTTTACAATATGCTTTTCG,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,495085,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206;Lrmda-202,Lrmda;Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17543,cg10691379,-0.00000118,0.00000142,-0.82876494,0.40787507,loss,ns,-0.00000654,0.00000242,-2.702661151,0.007257778,neg,ns,-0.002091827,0.00070905,-2.950181866,0.00341779,neg,ns,2.466254653,0.000078,0.0000244,3.196840011,0.001532787,pos,ns,0.039077201,Mtch2,Mtch2_Exon,2,90847346,90847395,90847394,90847395,50,+,CCTGTCCCAGCCGCTCATGTACGTGAAAGTGCTCATCCAGGTATGAGGCG,Promoter (<=1kb),2,90847155,90866810,19656,1,Mtch2-205,191,Mtch2-205;Mtch2-203;Mtch2-210;Mtch2-211;Mtch2-209;Mtch2-202;Mtch2-201;Mtch2-208,Mtch2;Mtch2;Mtch2;Mtch2;Mtch2;Mtch2;Mtch2;Mtch2,0;0;0;0;0;0;0;-4796,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,56428,ENSMUSG00000027282,conserved gene and region,2,90847027,90847575,549,*,549,62,0.695810565,0.948001671,0.112932605,7.90E-51,CpGisland,TRUE,U1,Pr-A
10830,cg05094582,-0.00000221,0.00000325,-0.680667214,0.496590155,loss,ns,-0.0000149,0.00000553,-2.702462563,0.007262013,neg,ns,-0.001078917,0.0016189,-0.666450494,0.505618871,neg,ns,0.296176725,-0.000140758,0.0000557,-2.528253618,0.011959399,neg,ns,0.913793076,Fam193b,Fam193b_fiveUTR,13,55556066,55556115,55556066,55556067,50,-,CGCCTAGGAGATTCTTGACGAGCTTTGGCATGAAGTCAGGGGGCAGCTTC,5' UTR,13,55539316,55571100,31785,2,Fam193b-206,14985,Fam193b-206;Fam193b-201;Fam193b-204;Fam193b-203;Fam193b-207,Fam193b;Fam193b;Fam193b;Fam193b;Fam193b,0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,11,212483,ENSMUSG00000021495,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21328,cg00101175,-0.00000618,0.00000415,-1.490198183,0.137188869,loss,ns,0.0000191,0.00000705,2.702453623,0.007262204,pos,ns,0.00668285,0.002065252,3.235851745,0.001343898,pos,ns,2.871633738,-0.000181873,0.000071,-2.560729851,0.010918659,neg,ns,0.917376139,Nfat5,Nfat5_threeUTR,8,107339290,107339339,107339290,107339291,50,-,CGACAGTGCCAAAGCACCTCACTATGTGCTTTCTCAGCTTACCACGGACA,3' UTR,8,107293470,107372227,78758,1,Nfat5-213,45820,Nfat5-213;Nfat5-214;Nfat5-206;Nfat5-211;Nfat5-203;Nfat5-201;Nfat5-209;Nfat5-205;Nfat5-202;Nfat5-207,Nfat5;Nfat5;Nfat5;Nfat5;Nfat5;Nfat5;Nfat5;Nfat5;Nfat5;Nfat5,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,13,17,54446,ENSMUSG00000003847,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5795,cg20670041,0.0000179,0.00000695,2.57633772,0.010447881,gain,ns,-0.0000319,0.0000118,-2.702217342,0.007267246,neg,ns,-0.007821104,0.003458656,-2.261313078,0.024432619,neg,ns,1.612029976,0.000178063,0.000118943,1.497042272,0.135399705,pos,ns,0.810384852,Kdm3b,Kdm3b_Exon,18,34810408,34810457,34810456,34810457,50,+,GAACAGGAGCAAGATGATTCTACTGTAGCCTGCCGTTTCTTTCACTTCCG,"Exon (Kdm3b-201/Kdm3b, exon 9 of 24)",18,34777047,34838660,61614,1,Kdm3b-201,33361,Kdm3b-201;Kdm3b-206;Kdm3b-203,Kdm3b;Kdm3b;Kdm3b,0;0;-3100,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,6,277250,ENSMUSG00000038773,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16984,cg01724721,0.000207307,0.0000321,6.465155175,3.93E-10,gain,yes,-0.0001472,0.0000545,-2.702166906,0.007268322,neg,ns,0.021005286,0.015959244,1.316183042,0.189084984,pos,ns,0.723342959,-0.000618741,0.000548837,-1.127368068,0.260458731,neg,ns,0.355623677,Kcnk12,Kcnk12_Exon,17,87746447,87746496,87746495,87746496,50,+,CAGGTCCCCGAAGCCGATGGTGCTGAAGGTGACGAAGCAGAAGTAGAGCG,"Exon (Kcnk12-201/Kcnk12, exon 2 of 2)",17,87745801,87797994,52194,2,Kcnk12-201,51498,Kcnk12-201,Kcnk12,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,210741,ENSMUSG00000050138,mapped to different genes,17,87746344,87746970,627,*,627,51,0.629984051,0.838499056,0.081339713,3.47E-34,CpGisland,TRUE,U3,Pr-B
25778,cg12737399,0.0000979,0.00000529,18.51709811,4.53E-52,gain,yes,-0.0000243,0.00000898,-2.701541636,0.007281682,neg,ns,0.003874946,0.0026314,1.472579497,0.141878997,pos,ns,0.848081891,-0.0000688,0.0000905,-0.760637125,0.44745199,neg,ns,0.11684029,Uncx,Uncx_Promoter,5,139540700,139540749,139540700,139540701,50,-,CGAGTCGTGTGCGTCTTATTATCAAGTTAATTAAAGCTAGCATCTGACAA,Promoter (2-3kb),5,139543494,139548179,4686,1,Uncx-201,-2794,Uncx-201;Uncx-202,Uncx;Uncx,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,22,88,22255,ENSMUSG00000029546,conserved gene and region,5,139540545,139540712,168,*,168,16,0.690476191,0.8,0.095238095,3.56E-12,CpGisland,TRUE,U13,Hc-P
2147,cg22926123,-0.00000742,0.00000542,-1.369774797,0.171748545,loss,ns,0.0000249,0.00000921,2.701266653,0.007287565,pos,ns,0.013223164,0.002697402,4.902185222,0.00000153,pos,ns,5.814964392,-0.000329339,0.0000928,-3.550312104,0.000444459,neg,ns,0.9192011,Gm48800,Gm48800_Intron,13,18085585,18085634,18085585,18085586,50,-,CGAATTAATCCTGGAATCAAAACAGATTTTCCGGGGAGCAATCTTCCATC,"Intron (4930448F12Rik-201/4930448F12Rik-201, intron 5 of 5)",13,18094472,18095954,1483,2,Gm48800-201,10369,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,3,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22594,cg20565053,0.00000928,0.0000102,0.91361488,0.361629256,gain,ns,0.0000466,0.0000172,2.701044934,0.007292311,pos,ns,0.018427377,0.005053433,3.646506695,0.000311687,pos,ns,3.506281998,-0.000171707,0.000173787,-0.988030308,0.323908341,neg,ns,0.301086084,Otop2,Otop2_Exon,11,115318956,115319005,115319004,115319005,50,-,GTCCTTCAGCTTACCCACCAGCTTGGGGTTGAGGCTGCTCTGCTTGGCCG,"Exon (Ush1g-201/Ush1g, exon 2 of 3)",11,115307163,115332303,25141,1,Otop2-201,11793,Otop2-201;Otop2-204;Otop2-203;Otop2-202;Ush1g-201,Otop2;Otop2;Otop2;Otop2;Ush1g,0;-3525;-3756;-3920;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,237987,ENSMUSG00000050201,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
20169,cg13648096,-0.0000129,0.000013,-0.993751622,0.321118839,loss,ns,0.0000598,0.0000221,2.70079088,0.007297753,pos,ns,-0.001534077,0.006485126,-0.236553182,0.813159673,neg,ns,0.089824167,-0.000280831,0.000223023,-1.259203929,0.208903995,neg,ns,0.375472256,Gm49473,Gm49473_Intergenic_downstream,15,102789162,102789211,102789162,102789163,50,+,CGCAGCCTGAAGATCTAAGAGGCTCTAAAGAAGATGGATAAGAAAATCGA,Distal Intergenic,15,102795121,102795371,251,2,Gm49473-201,6160,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,12,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
734,cg19926327,-0.0000345,0.00000498,-6.938771845,2.32E-11,loss,yes,-0.0000228,0.00000845,-2.699456408,0.007326397,neg,ns,0.010234085,0.002476187,4.133001412,0.0000461,pos,ns,4.336049276,-0.000366936,0.0000852,-4.308991439,0.000022,neg,ns,0.893054738,Nipbl,Nipbl_Exon,15,8372079,8372128,8372127,8372128,50,-,AAATTGTCATCCCTACAAGCCAAAAGGCAGTTCACCTCTTCTGCTATTCG,"Exon (Nipbl-201/Nipbl, exon 3 of 47)",15,8290617,8444463,153847,2,Nipbl-201,72335,Nipbl-201,Nipbl,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,19,36,71175,ENSMUSG00000022141,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21973,cg13632042,-0.00000988,0.00000969,-1.019490922,0.308764923,loss,ns,0.0000444,0.0000165,2.699150493,0.007332977,pos,ns,0.001333229,0.004821247,0.276531942,0.782323808,pos,ns,0.106613453,-0.000163169,0.000165802,-0.984116517,0.32582567,neg,ns,0.802552618,Lin7c,Lin7c_Promoter,2,109884207,109884256,109884207,109884208,50,+,CGTGACAAGTGACATCATTGCTATAATGAGAATTCCAAGCAGCACCACTG,Promoter (6-7kb),2,109890853,109901003,10151,1,Lin7c-201,-6597,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,2,22343,ENSMUSG00000027162,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9815,cg27353865,0.000000607,0.00000281,0.215748604,0.829325598,gain,ns,0.0000129,0.00000478,2.698992441,0.007336379,pos,ns,0.005102156,0.001400723,3.642515318,0.000316358,pos,ns,3.499821469,-0.000145356,0.0000482,-3.017523034,0.002759768,neg,ns,0.925257568,Trps1,Trps1_Intron,15,50929624,50929673,50929624,50929625,50,+,CGCAAGTGTTATTTTGACCACGTGAACATGGTTTCCATTTTTTAACTAGA,"Intron (Gm48913-201/Gm48913-201, intron 3 of 3)",15,50846176,50890463,44288,2,Trps1-208,-39161,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,36,83925,ENSMUSG00000038679,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26559,cg02352801,-0.0000439,0.0000104,-4.239130446,0.0000296,loss,ns,0.0000475,0.0000176,2.698815834,0.007340182,pos,ns,-0.00334517,0.005153799,-0.649068839,0.516774454,neg,ns,0.286698964,-0.0000275,0.000177239,-0.155321151,0.876669226,neg,ns,0.824215069,Casz1,Casz1_Intron,4,148920855,148920904,148920855,148920856,50,+,CGCGTTTCCCTAAATTGTCTTTGACTGCGTGCATGGGTAATGAAAGTTTA,"Intron (Casz1-201/Casz1, intron 4 of 15)",4,148804429,148945129,140701,1,Casz1-201,116426,Casz1-201;Casz1-202;Casz1-206,Casz1;Casz1;Casz1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,94,124,69743,ENSMUSG00000028977,mapped to different genes,4,148920806,148920883,78,*,78,8,0.551282051,1.356521739,0.102564103,0.00000181,CpGisland,TRUE,U11,Tr-P
26302,cg11578175,0.0000209,0.00000402,5.197713018,0.000000367,gain,yes,-0.0000185,0.00000684,-2.698679633,0.007343116,neg,ns,-0.00146832,0.002003208,-0.732984467,0.46412179,neg,ns,0.333368042,-0.0000591,0.0000689,-0.858265066,0.391409212,neg,ns,0.9169575,Ralgapa2,Ralgapa2_Intron,2,146325018,146325067,146325066,146325067,50,-,GGGAGCCCGCAGCATGTCCCTGGCGGTATGTGCAGTGTGTCGAGTCTGCG,"Intron (Ralgapa2-202/Ralgapa2, intron 37 of 40)",2,146239879,146512004,272126,2,Ralgapa2-202,186937,Ralgapa2-202;Ralgapa2-211;Ralgapa2-210;Ralgapa2-205;Ralgapa2-208,Ralgapa2;Ralgapa2;Ralgapa2;Ralgapa2;Ralgapa2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,26,241694,ENSMUSG00000037110,conserved gene and region,2,146325000,146325095,96,*,96,8,0.65625,0.775757576,0.083333333,0.00000859,CpGisland,TRUE,U10,Tr-S
13884,cg21840213,0.0000269,0.00000957,2.809423274,0.00527834,gain,ns,0.0000439,0.0000163,2.698243202,0.007352525,pos,ns,0.013795353,0.004764002,2.895748574,0.004051363,pos,ns,2.392398858,-0.0000845,0.000163834,-0.51570085,0.606430949,neg,ns,0.179201092,Sp9,Sp9_Promoter,2,73268825,73268874,73268825,73268826,50,+,CGGATCAATTGTAAAGGACCCGGATACATAATTTTAAAAAATCAGTTTCA,Promoter (3-4kb),2,73271925,73277471,5547,1,Sp9-201,-3051,Sp9-201;Sp9-202,Sp9;Sp9,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,6,21,381373,ENSMUSG00000068859,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
26935,cg21686636,0.000168239,0.0000105,16.09615417,8.58E-43,gain,yes,-0.0000479,0.0000178,-2.698049923,0.007356696,neg,ns,0.014064488,0.00520212,2.7036071,0.007237635,pos,ns,2.140403348,-0.000258517,0.0001789,-1.445035299,0.149458027,neg,ns,0.448593448,Hes5,Hes5_Promoter,4,154958419,154958468,154958467,154958468,50,+,CCACACTTTGGCCCCATTCACAGTGTTAAACGGCCCACAAAGGCCAGGCG,Promoter (2-3kb),4,154960923,154962371,1449,1,Hes5-201,-2455,Hes5-201;Hes5-202,Hes5;Hes5,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,3,15208,ENSMUSG00000048001,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
18907,cg05904262,-0.0000263,0.00000478,-5.500040886,7.95E-08,loss,yes,0.0000219,0.00000812,2.697927759,0.007359333,pos,ns,0.002586871,0.002377449,1.08808689,0.277401962,pos,ns,0.556890471,-0.000162874,0.0000818,-1.992096363,0.047237372,neg,ns,0.892425443,Dach1,Dach1_Intron,14,97868614,97868663,97868614,97868615,50,+,CGCTTTAATAAATTTAAACATATTCTCAAGGCCAGGGAAGATAGGAAACC,"Intron (Dach1-201/Dach1, intron 6 of 10)",14,97786853,98169543,382691,2,Dach1-201,300880,Dach1-201;Dach1-202;Dach1-203,Dach1;Dach1;Dach1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,76,13134,ENSMUSG00000055639,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27156,cg23009726,-0.00000656,0.00000629,-1.042757877,0.297872943,loss,ns,0.0000288,0.0000107,2.697683054,0.007364618,pos,ns,0.004463146,0.00313229,1.424882639,0.155197096,pos,ns,0.80911641,-0.000121899,0.000107719,-1.131635708,0.258662246,neg,ns,0.894693773,Sh3kbp1,Sh3kbp1_Exon,X,159816614,159816663,159816662,159816663,50,-,AGACTGGAATGTTTCCTTCCAACTTCATCAAGGAGCTGTCAGGGGAGTCG,"Exon (Sh3kbp1-206/Sh3kbp1, exon 5 of 18)",20,159627272,159978069,350798,1,Sh3kbp1-206,189342,Sh3kbp1-206;Sh3kbp1-213;Sh3kbp1-201;Sh3kbp1-207;Sh3kbp1-211;Sh3kbp1-202,Sh3kbp1;Sh3kbp1;Sh3kbp1;Sh3kbp1;Sh3kbp1;Sh3kbp1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,58194,ENSMUSG00000040990,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12426,cg18237825,-0.00000273,0.00000198,-1.374114691,0.170398746,loss,ns,0.00000909,0.00000337,2.696394042,0.007392513,pos,ns,0.002910548,0.0009874,2.947688097,0.00344471,pos,ns,2.462847315,-0.0000858,0.000034,-2.527460682,0.011985879,neg,ns,0.963744704,Fign,Fign_Intergenic_upstream,2,64177832,64177881,64177880,64177881,50,+,TCCTCTCAGCTCAAATGCAGGTAACAAATGGAATTCAATCAGTGTTTGCG,Distal Intergenic,2,63977337,64098038,120702,2,Fign-201,-79794,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,84,60344,ENSMUSG00000075324,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13613,cg17507989,0.000150264,0.0000092,16.32541239,1.14E-43,gain,yes,-0.0000422,0.0000156,-2.696384994,0.007392709,neg,ns,-0.000582992,0.004581077,-0.127260905,0.89881641,neg,ns,0.046329007,0.000308057,0.000157543,1.955388146,0.051435451,pos,ns,0.257859058,Dlx1,Dlx1_Intron,2,71530608,71530657,71530656,71530657,50,+,AAACAGAAACCCACATGTGCACGTATTAGTCTCGGTAATTATTTATTGCG,"Intron (Dlx1-201/Dlx1, intron 1 of 2)",2,71528113,71533980,5868,1,Dlx1-201,2495,Dlx1-201;Dlx1-202;Dlx1-205;Dlx1-204;Dlx1-203;Dlx1-206,Dlx1;Dlx1;Dlx1;Dlx1;Dlx1;Dlx1,0;0;0;0;0;-123,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,36,13390,ENSMUSG00000041911,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
14052,cg06166932,0.0000343,0.00000395,8.702037598,1.96E-16,gain,yes,-0.0000181,0.00000671,-2.696172172,0.007397324,neg,ns,0.001345769,0.001964566,0.685021222,0.4938424,pos,ns,0.306411625,0.000168931,0.0000676,2.500418607,0.01292079,pos,ns,0.119763527,Adgrb1,Adgrb1_fiveUTR,15,74516154,74516203,74516202,74516203,50,-,TCCCCCTCTAATGTGTGATCTGGAAGCTCTATAAAGCCTGATGTAATCCG,Promoter (<=1kb),15,74516195,74589464,73270,1,Adgrb1-201,0,Adgrb1-201;Adgrb1-205;Adgrb1-206,Adgrb1;Adgrb1;Adgrb1,0;-235;-628,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,5,107831,ENSMUSG00000034730,conserved gene and region,15,74516202,74517009,808,*,808,101,0.742574257,0.914723816,0.125,1.74E-87,CpGisland,TRUE,U3,Pr-B
27858,cg24113826,-0.0000159,0.00000584,-2.718097039,0.00693532,loss,ns,-0.0000267,0.00000992,-2.69610023,0.007398884,neg,ns,-0.00997521,0.002905454,-3.43327132,0.000677423,neg,ns,3.169139796,0.000432796,0.0000999,4.331498218,0.00002,pos,ns,0.849480543,Ush2a,Ush2a_Intron,1,188656590,188656639,188656590,188656591,50,+,CGATCCGTAATGACCCTCTACATGTTAGTATTGCAGTAAAGCTGGGCTTT,"Intron (Ush2a-201/Ush2a, intron 36 of 70)",1,188263034,188965041,702008,1,Ush2a-201,393556,Ush2a-201;Ush2a-204,Ush2a;Ush2a,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,33,36,22283,ENSMUSG00000026609,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11849,cg02400551,-0.00000196,0.00000569,-0.344772497,0.7304992,loss,ns,-0.0000261,0.00000967,-2.695359259,0.007414975,neg,ns,-0.008745118,0.002832007,-3.087957504,0.002197644,neg,ns,2.658042593,0.000117451,0.0000974,1.205954624,0.228754592,pos,ns,0.884669739,Hmgxb3,Hmgxb3_threeUTR,18,61147308,61147357,61147356,61147357,50,+,AATAATTCGACCAAGAGGTTTGCTCGATGGTGACTGTCTCCTCACTCACG,3' UTR,18,61131277,61177050,45774,2,Hmgxb3-201,29693,Hmgxb3-201;Hmgxb3-202;Hmgxb3-203;Hmgxb3-205;Hmgxb3-207,Hmgxb3;Hmgxb3;Hmgxb3;Hmgxb3;Hmgxb3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,3,106894,ENSMUSG00000024622,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
538,cg20189913,0.000108405,0.0000139,7.796435873,9.75E-14,gain,yes,-0.0000637,0.0000236,-2.695255917,0.007417221,neg,ns,0.000135376,0.006920403,0.019561829,0.984405499,pos,ns,0.006825969,0.000371856,0.000237992,1.562471876,0.119197109,pos,ns,0.441974961,Dlx6,Dlx6_Promoter,6,6861704,6861753,6861704,6861705,50,+,CGGATATAAATCCCCTTGCAAATAATAAATGGATTAATAATAACAAGGTA,Promoter (1-2kb),6,6863334,6867970,4637,1,Dlx6-203,-1581,Dlx6-203;Dlx6-202;Dlx6-201;Dlx6-204,Dlx6;Dlx6;Dlx6;Dlx6,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,9,36,13396,ENSMUSG00000029754,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
24482,cg18131423,0.00002,0.0000041,4.88601218,0.00000165,gain,yes,-0.0000188,0.00000696,-2.6950561,0.007421567,neg,ns,0.003420659,0.002040336,1.676517744,0.094644925,pos,ns,1.023902668,-0.000230887,0.0000702,-3.290534055,0.001115261,neg,ns,0.842922326,Atxn2l,Atxn2l_Exon,7,126492776,126492825,126492824,126492825,50,+,CTCCTGGAAATCCAGGCGCCTGGCCAGGCTGCTCACCTTGGGGGTGTCCG,"Exon (Atxn2l-201/Atxn2l, exon 22 of 23)",7,126491708,126503437,11730,2,Atxn2l-201,10612,Atxn2l-201;Atxn2l-203;Atxn2l-206;Atxn2l-205;Atxn2l-202;Tufm-201;Tufm-202;Tufm-203;Tufm-204;Tufm-205;Tufm-206,Atxn2l;Atxn2l;Atxn2l;Atxn2l;Atxn2l;Tufm;Tufm;Tufm;Tufm;Tufm;Tufm,0;0;0;0;0;5415;5398;5147;4162;4090;3405,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,13,233871,ENSMUSG00000032637,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17280,cg12273770,0.0000122,0.0000037,3.296955828,0.001090923,gain,ns,0.0000169,0.00000629,2.694922751,0.007424468,pos,ns,0.006334289,0.0018422,3.438437904,0.000665097,pos,ns,3.177115122,-0.0000725,0.0000634,-1.144567724,0.253271213,neg,ns,0.0753512,Tmem135,Tmem135_Promoter,7,89403529,89403578,89403577,89403578,50,-,CCAACCTTATTTAGAAACCGTGTCCCCGAGACAGGAAGGGCGGCGGGCCG,Promoter (<=1kb),7,89156448,89404222,247775,2,Tmem135-203,644,Fzd4-201;Tmem135-203,Fzd4;Tmem135,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,2,3,72759,ENSMUSG00000039428,mapped to different genes,7,89403351,89403804,454,*,454,42,0.649779736,0.878143134,0.092511013,1.10E-30,CpGisland,TRUE,U1,Pr-A
3877,cg12209151,-0.0000056,0.00000687,-0.814957769,0.415722129,loss,ns,-0.0000314,0.0000117,-2.694483625,0.00743403,neg,ns,0.008665083,0.003417642,2.53539788,0.011723156,pos,ns,1.930955461,-0.000262207,0.000117532,-2.230934871,0.026400541,neg,ns,0.83376159,Nsd3,Nsd3_Exon,8,25676658,25676707,25676706,25676707,50,-,CGAGATTAGGAGGCCTGATTGCGTTGTGTTTCCACCATTCCACAGGGTCG,"Exon (Nsd3-211/Nsd3, exon 10 of 10)",8,25601601,25677214,75614,1,Nsd3-211,75057,Nsd3-211;Nsd3-203;Nsd3-208;Nsd3-204;Nsd3-206;Nsd3-201;Nsd3-205,Nsd3;Nsd3;Nsd3;Nsd3;Nsd3;Nsd3;Nsd3,0;74374;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,14,234135,ENSMUSG00000054823,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12893,cg15290048,0.0000167,0.0000483,0.345471421,0.7299743,gain,ns,0.000220868,0.000082,2.694266873,0.007438754,pos,ns,0.060102529,0.024016488,2.502552824,0.012844716,pos,ns,1.891275508,-0.000904775,0.000825925,-1.095468156,0.274161932,neg,ns,0.456399555,Erbb4,Erbb4_Intron,1,68046876,68046925,68046876,68046877,50,+,CGTGGAAGGGCAATGCAGCTCCAAGGGAACATCTGTGAGGCCAATTAGCT,"Intron (Erbb4-201/Erbb4, intron 25 of 27)",1,68032186,69107756,1075571,2,Erbb4-201,1060831,Erbb4-201;Erbb4-202,Erbb4;Erbb4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,13,13869,ENSMUSG00000062209,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
10634,cg21023136,-0.0000144,0.00000862,-1.670739379,0.095782389,loss,ns,0.0000395,0.0000147,2.694219497,0.007439787,pos,ns,0.007912428,0.004292629,1.843259051,0.066245662,pos,ns,1.178842557,-0.000318604,0.000147623,-2.158223364,0.031677993,neg,ns,0.817060832,Gm8881,Gm8881_Intergenic_downstream,16,54729107,54729156,54729155,54729156,50,-,AAATTTTAATTTTCCGCTATGAAGCATCTAAGGTCTGTCTGGGATAGTCG,Distal Intergenic,16,54826498,54827894,1397,2,Gm8881-201,98787,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,667927,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12058,cg03342531,-0.00000476,0.00000345,-1.382610931,0.167779384,loss,ns,0.0000158,0.00000585,2.694118132,0.007441997,pos,ns,0.000317664,0.001714897,0.185238088,0.853163431,pos,ns,0.068967768,-0.0000264,0.000059,-0.448297901,0.654251378,neg,ns,0.926145308,Efna5,Efna5_Intron,17,62624793,62624842,62624793,62624794,50,-,CGGCTTTCTGTGCACTGCTGTGAGGTTTTGACTTTATAGAAAAAGGCACT,"Intron (Efna5-201/Efna5, intron 2 of 4)",17,62604184,62881317,277134,2,Efna5-201,256475,Efna5-201;Efna5-202,Efna5;Efna5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,21,13640,ENSMUSG00000048915,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12043,cg23627331,0.000105241,0.00000882,11.93635217,2.80E-27,gain,yes,-0.0000403,0.000015,-2.693619322,0.007452882,neg,ns,0.008784456,0.004388244,2.001815645,0.046175606,pos,ns,1.335587398,-0.00000861,0.000150911,-0.057034321,0.954554599,neg,ns,0.793701237,Fap,Fap_Intron,2,62517934,62517983,62517934,62517935,50,+,CGGATACATCTAGGGTTGGCATTTCAAGGAATATGTGTGGGTTTTTCGTC,"Intron (Fap-202/Fap, intron 19 of 25)",2,62500943,62574075,73133,2,Fap-202,56092,Fap-202;Fap-205;Fap-201;Fap-208;Fap-209,Fap;Fap;Fap;Fap;Fap,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,8,14089,ENSMUSG00000000392,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26965,cg02150658,0.000036,0.0000158,2.274225489,0.023635619,gain,ns,0.0000725,0.0000269,2.693521014,0.007455029,pos,ns,0.031457198,0.007884199,3.989904032,0.0000825,pos,ns,4.083322106,-0.000806835,0.000271137,-2.975746973,0.003152704,neg,ns,0.583851862,Ptchd1,Ptchd1_Exon,X,155623167,155623216,155623215,155623216,50,+,GACCTGGTAGCGGCTGAAGCTGGCGCCGAGCAGGATGGAGATGAGCACCG,Promoter (<=1kb),20,155573455,155623325,49871,2,Ptchd1-201,109,Gm15155-202;Gm15155-201;Ptchd1-201;Ptchd1-203;Ptchd1-202,Gm15155;Gm15155;Ptchd1;Ptchd1;Ptchd1,-1525;-1559;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,11,211612,ENSMUSG00000041552,conserved gene and region,X,155623027,155623834,808,*,808,97,0.735148515,0.890798327,0.120049505,4.32E-82,CpGisland,TRUE,U3,Pr-B
2652,cg05932420,0.00000491,0.00000404,1.216517955,0.224713092,gain,ns,-0.0000185,0.00000686,-2.693130688,0.00746356,neg,ns,-0.005275947,0.002010458,-2.62425125,0.009113962,neg,ns,2.040292781,0.000166873,0.0000691,2.413576876,0.016376333,pos,ns,0.842311599,Ppp2r1a,Ppp2r1a_threeUTR,17,20956705,20956754,20956753,20956754,50,+,GTACTTCCGGAACCTGTGCTCAGATGACACCCCCATGGTGCGGCGGGCCG,3' UTR,17,20945311,20965916,20606,1,Ppp2r1a-201,11394,Ppp2r1a-201;Ppp2r1a-207;Ppp2r1a-206;Ppp2r1a-205;Ppp2r1a-202;Ppp2r1a-204;Ppp2r1a-203,Ppp2r1a;Ppp2r1a;Ppp2r1a;Ppp2r1a;Ppp2r1a;Ppp2r1a;Ppp2r1a,0;0;0;-24;-1987;-2235;-3736,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,51792,ENSMUSG00000007564,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4265,cg08433376,-0.00000334,0.00000203,-1.645545869,0.10087078,loss,ns,0.00000929,0.00000345,2.692591899,0.007475349,pos,ns,0.002717957,0.001011293,2.687606907,0.007585222,pos,ns,2.120031716,-0.0000608,0.0000348,-1.749133275,0.081257637,neg,ns,0.958147865,Opcml,Opcml_Intron,9,28034109,28034158,28034157,28034158,50,+,AGCTTGTTTGGGATAGATGATATTTTTATAGCTTCTGCTTTGCTTCACCG,"Intron (Opcml-202/Opcml, intron 1 of 7)",9,27790947,28925410,1134464,1,Opcml-202,243162,Opcml-202;Opcml-203,Opcml;Opcml,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,12,330908,ENSMUSG00000062257,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20428,cg09911121,0.0000548,0.00000471,11.63374454,3.35E-26,gain,yes,-0.0000215,0.000008,-2.692480288,0.007477793,neg,ns,0.004348634,0.002343244,1.8558182,0.064428362,pos,ns,1.19092291,-0.0000533,0.0000806,-0.661049775,0.509071369,neg,ns,0.129442921,Hoxc4,Hoxc4_threeUTR,15,103035303,103035352,103035303,103035304,50,+,CGAGCGAGAATGGGTAATTACATCCCCCATAAATTTTATGGCTTAGCTAC,3' UTR,15,103018934,103036405,17472,1,Hoxc4-202,16369,Hoxc4-202;Hoxc4-201,Hoxc4;Hoxc4,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,17,91,15423,ENSMUSG00000075394,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
17881,cg26853813,-0.0000304,0.00000586,-5.186698526,0.000000387,loss,yes,-0.0000268,0.00000996,-2.692330939,0.007481065,neg,ns,-0.004241046,0.002918794,-1.453013171,0.147231584,neg,ns,0.831999016,-0.000143568,0.000100377,-1.430284904,0.153642396,neg,ns,0.820027795,Phf21a,Phf21a_Exon,2,92327097,92327146,92327097,92327098,50,+,CGTCTAGTAAGGTCACTGGGCCTGGGGCAGAGGCTGTCCAAATTGTGGCA,"Exon (Phf21a-204/Phf21a, exon 6 of 17)",2,92093117,92364666,271550,1,Phf21a-201,233980,Phf21a-201;Phf21a-202;Phf21a-204;Phf21a-209;Phf21a-208;Phf21a-207;Phf21a-206;Phf21a-205;Phf21a-203;Phf21a-213;Phf21a-215;Phf21a-214;Phf21a-218,Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,21,192285,ENSMUSG00000058318,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22363,cg00718342,0.00020331,0.0000215,9.464232105,7.76E-19,gain,yes,-0.0000982,0.0000365,-2.691923506,0.007489997,neg,ns,0.019064942,0.01069179,1.783138485,0.075542103,pos,ns,1.121810929,-0.000872449,0.00036769,-2.372786571,0.018264271,neg,ns,0.456040145,Fmn1,Fmn1_Intron,2,113619072,113619121,113619072,113619073,50,-,CGATTGCTTAACAGGCATTAAGTGAGACACATAGGACTGTGTAAATATTT,"Intron (Fmn1-202/Fmn1, intron 14 of 18)",2,113327736,113716767,389032,1,Fmn1-202,291336,Fmn1-202;Fmn1-203;Fmn1-210;Fmn1-211;Fmn1-201,Fmn1;Fmn1;Fmn1;Fmn1;Fmn1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,4,14260,ENSMUSG00000044042,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8796,cg03907471,-0.00000328,0.00000137,-2.392190693,0.017343522,loss,ns,0.00000628,0.00000233,2.691385165,0.007501814,pos,ns,0.001711434,0.000683315,2.504606488,0.012771889,pos,ns,1.893744867,-0.0000391,0.0000235,-1.663050553,0.097312948,neg,ns,0.964361006,Oga,Oga_Intron,19,45761935,45761984,45761983,45761984,50,+,CAAAGAAACAATGTGAAGTGTATACCTAGAGCCGCTGCGCTTCGCAGGCG,"Intron (Oga-201/Oga, intron 11 of 15)",19,45750259,45783551,33293,2,Oga-201,21567,Oga-201;Oga-204;Oga-203;Oga-206,Oga;Oga;Oga;Oga,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,21,76055,ENSMUSG00000025220,conserved gene but different region,19,45761874,45761986,113,*,113,12,0.575221239,1.308880309,0.10619469,8.79E-10,CpGisland,TRUE,U10,Tr-S
19374,cg19551787,0.0000242,0.0000113,2.137109539,0.033371438,gain,ns,0.0000517,0.0000192,2.691384348,0.007501832,pos,ns,0.02141103,0.005630642,3.80259152,0.000172432,pos,ns,3.763380943,-0.000795717,0.000193637,-4.109314618,0.0000508,neg,ns,0.57308393,Efnb1,Efnb1_Intron,X,99139285,99139334,99139333,99139334,50,+,TCACTCTTAGTCACTCTCTGCCTCTTTTTCTCAAGTCCTTTTGTTTCTCG,"Intron (Efnb1-201/Efnb1, intron 1 of 4)",20,99136130,99148991,12862,1,Efnb1-201,3155,Efnb1-201;Efnb1-202,Efnb1;Efnb1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,14,13641,ENSMUSG00000031217,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23484,cg15442907,0.00000511,0.000018,0.283745524,0.776794817,gain,ns,0.0000824,0.0000306,2.691368958,0.00750217,pos,ns,0.008576252,0.008971572,0.955936404,0.339849226,pos,ns,0.468713715,0.000210516,0.000308532,0.68231644,0.495548388,pos,ns,0.117316212,Cacna1c,Cacna1c_threeUTR,6,118593788,118593837,118593788,118593789,50,-,CGGTTAACTCCAGGTCACGAGAACAGTGAGGCACTTCTGAAACGAACCCA,3' UTR,6,118587240,119196231,608992,2,Cacna1c-207,602394,Cacna1c-207;Cacna1c-223;Cacna1c-205;Cacna1c-215;Cacna1c-224;Cacna1c-225;Cacna1c-226;Cacna1c-227;Cacna1c-202;Cacna1c-201;Cacna1c-203;Cacna1c-212;Cacna1c-216;Cacna1c-210;Cacna1c-206;Cacna1c-208;Cacna1c-213;Cacna1c-217;Cacna1c-219;Cacna1c-220;Cacna1c-209;Cacna1c-204;Cacna1c-214;Cacna1c-222,Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,15,12288,ENSMUSG00000051331,conserved gene and region,6,118593662,118594144,483,*,483,34,0.619047619,0.741734417,0.070393375,6.89E-21,CpGisland,TRUE,U3,Pr-B
24878,cg14573370,-0.00000353,0.00000345,-1.024188402,0.306544836,loss,ns,-0.0000158,0.00000586,-2.691293874,0.007503819,neg,ns,-0.003385132,0.00171639,-1.972239724,0.049470807,neg,ns,1.305651005,0.0000014,0.000059,0.023762968,0.981056967,pos,ns,0.921226284,Slc20a1,Slc20a1_Exon,2,129206443,129206492,129206443,129206444,50,+,CGTCTGGTTCTTTGTATGTCCCAGGATGAAGAGAAAAATTGAACGTAAGT,"Exon (Slc20a1-201/Slc20a1, exon 6 of 11)",2,129198764,129211616,12853,1,Slc20a1-201,7679,Slc20a1-201;Slc20a1-205;Slc20a1-202;Slc20a1-203;Slc20a1-206,Slc20a1;Slc20a1;Slc20a1;Slc20a1;Slc20a1,0;7640;0;0;-868,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,20515,ENSMUSG00000027397,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26476,cg06146537,-0.0000551,0.0000176,-3.131034867,0.001907954,loss,ns,0.0000805,0.0000299,2.691086542,0.007508376,pos,ns,-0.017834834,0.008763559,-2.035113046,0.042689922,neg,ns,1.369674634,0.000312868,0.000301378,1.038125888,0.300020496,pos,ns,0.613306719,Gm18505,Gm18505_Intergenic_upstream,1,148721099,148721148,148721147,148721148,50,+,CAAGGATTCTCACTTTCCACCTCACAGATGTCCTTGTAAACTGGAACACG,Distal Intergenic,1,148650345,148651134,790,2,Gm18505-201,-69965,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,100417287,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25934,cg07201422,-0.0000169,0.0000148,-1.142874948,0.253972382,loss,ns,0.0000675,0.0000251,2.691007901,0.007510105,pos,ns,0.009850529,0.007351965,1.339849844,0.181275476,pos,ns,0.741660946,-0.0000349,0.000252833,-0.1378834,0.890422087,neg,ns,0.848431944,Spen,Spen_threeUTR,4,141467897,141467946,141467945,141467946,50,-,TATTTTTTAATAAAGTTTGTAATCCAATGGACACACAAAACAAAACTGCG,3' UTR,4,141467890,141538449,70560,2,Spen-201,70503,Spen-201;Spen-202;Spen-204;Zbtb17-201;Zbtb17-205;Zbtb17-204;Zbtb17-206;Zbtb17-202;Zbtb17-203,Spen;Spen;Spen;Zbtb17;Zbtb17;Zbtb17;Zbtb17;Zbtb17;Zbtb17,0;0;3547;23243;0;23198;4514;3079;2482,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,19,56381,ENSMUSG00000040761,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11034,cg05763600,-0.00000541,0.00000324,-1.66801926,0.096321634,loss,ns,0.0000148,0.00000551,2.690445655,0.007522476,pos,ns,0.003162212,0.001614991,1.958037187,0.051122333,pos,ns,1.291389336,-0.000107695,0.0000555,-1.939066864,0.053400422,neg,ns,0.945063331,Gm28900,Gm28900_Intergenic_upstream,1,56340568,56340617,56340616,56340617,50,-,AAACAATTTATACACAAAGAAGATTTTATTCTCTCATTTCAGAAGATCCG,Distal Intergenic,1,56451407,56451562,156,1,Gm28900-201,-110839,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,12,102635907,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16923,cg23704891,-0.00000029,0.00000258,-0.112524548,0.910480335,loss,ns,-0.0000118,0.00000438,-2.690097946,0.007530137,neg,ns,-0.001156433,0.001283317,-0.901127552,0.36822005,neg,ns,0.433892568,-0.0000432,0.0000441,-0.978296414,0.328690567,neg,ns,0.916342705,Gigyf2,Gigyf2_Exon,1,87442033,87442082,87442033,87442034,50,-,CGGCAGAATAAGAAAGTAGAAGAAGAAGAAAAGTTGCTGAAGCTCTTTCA,"Exon (Gigyf2-201/Gigyf2, exon 26 of 29)",1,87327003,87450796,123794,1,Gigyf2-201,115030,Gigyf2-201;Gigyf2-205;Gigyf2-206;Gigyf2-217;Gigyf2-211;Gigyf2-221;Gigyf2-216,Gigyf2;Gigyf2;Gigyf2;Gigyf2;Gigyf2;Gigyf2;Gigyf2,0;0;0;0;38366;0;-1246,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,Exon,1,2,227331,ENSMUSG00000048000,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13059,cg15049570,0.000104345,0.00000977,10.67788873,7.15E-23,gain,yes,-0.0000447,0.0000166,-2.690082043,0.007530487,neg,ns,-0.011620369,0.004863675,-2.389215687,0.01748198,neg,ns,1.757409384,0.000125208,0.000167261,0.748578116,0.454679097,pos,ns,0.212013013,Tcf4,Tcf4_Intron,18,69347215,69347264,69347215,69347216,50,+,CGATTGTGTTTTCTCCAAGGATTGGGACTGGATTTTCTGATTGCGGTTAT,"Intron (Tcf4-259/Tcf4, intron 1 of 6)",18,69343356,69564082,220727,1,Tcf4-259,3859,Tcf4-259;Tcf4-201;Tcf4-207;Tcf4-210;Tcf4-240;Tcf4-254;Tcf4-246;Tcf4-206;Tcf4-202;Tcf4-257;Tcf4-232;Tcf4-215;Tcf4-248;Tcf4-231;Tcf4-205;Tcf4-253;Tcf4-244;Tcf4-233;Tcf4-238;Tcf4-245;Tcf4-249;Tcf4-219;Tcf4-235;Tcf4-227,Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,42,66,21413,ENSMUSG00000053477,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
9013,cg21880169,-0.0000117,0.00000571,-2.052239267,0.040985892,loss,ns,0.0000261,0.0000097,2.689951146,0.007533373,pos,ns,0.003107479,0.002840949,1.093817189,0.274884364,pos,ns,0.560849963,0.0000833,0.0000977,0.852282157,0.394715462,pos,ns,0.566819123,Sergef,Sergef_Intron,7,46535755,46535804,46535803,46535804,50,-,AGTAAATTCAGTGGAAAAGTACTGTGTCAAGCAGCCTAATTAAACTGACG,"Intron (Sergef-201/Sergef, intron 9 of 10)",7,46443154,46639807,196654,2,Sergef-201,104003,Sergef-201;Sergef-206;Sergef-205,Sergef;Sergef;Sergef,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,27414,ENSMUSG00000030839,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25632,cg25736045,-0.0000443,0.00000908,-4.882956548,0.00000168,loss,yes,0.0000415,0.0000154,2.689748524,0.007537842,pos,ns,0.002256128,0.004518185,0.499343939,0.617891298,pos,ns,0.209087921,-0.0000947,0.00015538,-0.609196424,0.542840443,neg,ns,0.428234859,Jag1,Jag1_Intergenic_upstream,2,137560537,137560586,137560585,137560586,50,+,CAAAGCATGATTCAGAATCTAATTTTGTCAGCTGGTGATTGGCTCCCACG,Distal Intergenic,2,137081456,137116644,35189,2,Jag1-201,-443893,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,16,16449,ENSMUSG00000027276,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14114,cg19652291,0.000145406,0.0000135,10.75257668,3.97E-23,gain,yes,-0.0000618,0.000023,-2.689737093,0.007538094,neg,ns,0.0000534,0.006730501,0.007940118,0.993669876,pos,ns,0.002757876,0.000158944,0.000231461,0.686695555,0.492787932,pos,ns,0.651610224,Hoxd11,Hoxd11_Exon,2,74685384,74685433,74685432,74685433,50,-,TTAATTGGGTTATATTATACACCTTCTGGTGGGCCCAAAAGAGATTTCCG,"Exon (Hoxd11-201/Hoxd11, exon 2 of 2)",2,74679557,74687016,7460,1,Hoxd11-201,5827,Hoxd11-201;Hoxd11-202,Hoxd11;Hoxd11,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,14,15431,ENSMUSG00000042499,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
20327,cg15674058,-0.00000357,0.00000311,-1.149374874,0.251287422,loss,ns,0.0000142,0.00000528,2.68927653,0.007548261,pos,ns,0.003267835,0.001547361,2.111876413,0.035496837,pos,ns,1.449810339,-0.0000034,0.0000532,-0.063976386,0.949030263,neg,ns,0.948774397,Unc79,Unc79_Exon,12,102998622,102998671,102998622,102998623,50,+,CGCGGCCCGCAAAGTCGTGATGCTCAGTTGTCAGACTACCCTTCTTTGGA,"Exon (Unc79-202/Unc79, exon 3 of 49)",12,102948859,103184001,235143,1,Unc79-202,49763,Unc79-202;Unc79-208;Unc79-209;Unc79-204;Unc79-201;Unc79-205,Unc79;Unc79;Unc79;Unc79;Unc79;Unc79,0;0;-2396;-3167;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,24,217843,ENSMUSG00000021198,conserved gene but different region,12,102998516,102998638,123,*,123,9,0.577235772,1.02690167,0.073170732,0.00000513,CpGisland,TRUE,U15,NS
3603,cg07856801,-0.0000328,0.0000124,-2.638602378,0.008745298,loss,ns,0.0000568,0.0000211,2.688807963,0.007558617,pos,ns,0.000910116,0.006193898,0.146937591,0.883276793,pos,ns,0.05390318,-0.000324543,0.000213008,-1.52362076,0.128622929,neg,ns,0.700829398,Gm12067,Gm12067_Intron,11,24695576,24695625,24695576,24695577,50,+,CGGGGCATATTGACAAAAAGCCATGGTTTTTGCCCAGGGGGTGGAATTTC,"Intron (Gm12068-201/Gm12068-201, intron 2 of 3)",11,24552438,24553962,1525,2,Gm12067-201,-141614,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,58,100417843,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6972,cg23484102,0.00003,0.000014,2.141072604,0.033047771,gain,ns,0.0000641,0.0000238,2.68866895,0.007561692,pos,ns,0.007896584,0.006985297,1.130457853,0.259157206,pos,ns,0.586436711,-0.0000489,0.000240224,-0.203535774,0.838849827,neg,ns,0.499530591,Kctd16,Kctd16_Exon,18,40259070,40259119,40259118,40259119,50,-,TTGATATGTTGTCAGAGTGTGGATTCCACATGGTGGCCTGTAACTCATCG,"Exon (Kctd16-206/Kctd16, exon 2 of 3)",18,40257023,40531630,274608,1,Kctd16-206,2047,Kctd16-202;Kctd16-206;Kctd16-201;Kctd16-203,Kctd16;Kctd16;Kctd16;Kctd16,2108;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,383348,ENSMUSG00000051401,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6620,cg26917960,0.0000562,0.00000475,11.82754536,6.86E-27,gain,yes,-0.0000217,0.00000807,-2.688057065,0.007575241,neg,ns,-0.00390138,0.002363644,-1.650578752,0.099837337,neg,ns,1.00070701,0.000525979,0.0000813,6.470757785,3.80E-10,pos,yes,0.855655382,Dennd1a,Dennd1a_Intron,2,37832371,37832420,37832371,37832372,50,+,CGTGTGACATTTTTATTCATGGTGGCGTACGCCCTTGTAATGATCAGCTC,"Intron (Dennd1a-201/Dennd1a, intron 19 of 21)",2,37798991,38287375,488385,2,Dennd1a-201,454955,Dennd1a-201;Dennd1a-206;Dennd1a-207,Dennd1a;Dennd1a;Dennd1a,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,46,227801,ENSMUSG00000035392,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22440,cg09619699,0.0000534,0.000018,2.970079961,0.003209786,gain,ns,0.0000821,0.0000305,2.687583783,0.007585735,pos,ns,0.01190166,0.008948502,1.330017038,0.18449036,pos,ns,0.734026322,0.000139289,0.000307738,0.452620264,0.651138794,pos,ns,0.399041469,Klhl4,Klhl4_Exon,X,114558585,114558634,114558633,114558634,50,+,TGTTCCTCGAGATGCTGTTGCTGTGTGCCCTCTTGGAGACAAACTCTACG,"Exon (Klhl4-201/Klhl4, exon 10 of 11)",20,114474333,114560829,86497,1,Klhl4-201,84252,Klhl4-201;Klhl4-202;Klhl4-203,Klhl4;Klhl4;Klhl4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,237010,ENSMUSG00000025597,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24062,cg09746610,0.0000216,0.00000894,2.418641807,0.016154366,gain,ns,0.0000408,0.0000152,2.687239325,0.007593381,pos,ns,0.010534584,0.004448157,2.368302981,0.018483041,pos,ns,1.733226562,-0.000376914,0.000152972,-2.463946769,0.014284186,neg,ns,0.782700255,Clybl,Clybl_Intron,14,122367404,122367453,122367404,122367405,50,+,CGAGGGACCACCTCTTCCACTGGAGTGTAAAAGTGGACGGATGTTGTTTT,"Intron (Clybl-201/Clybl, intron 2 of 7)",14,122181704,122402234,220531,1,Clybl-201,185700,Clybl-201;Clybl-202,Clybl;Clybl,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,13,69634,ENSMUSG00000025545,mapped to different genes,14,122367319,122367490,172,*,172,14,0.552325581,1.076923077,0.081395349,9.34E-10,CpGisland,TRUE,U15,NS
1874,cg01118512,-0.00000176,0.00000178,-0.985042697,0.325371275,loss,ns,0.00000814,0.00000303,2.686967919,0.00759941,pos,ns,0.003409606,0.000887542,3.841627453,0.00014824,pos,ns,3.829033979,-0.0000955,0.0000305,-3.128833483,0.001921859,neg,ns,0.960997615,Mdfic,Mdfic_Intergenic_downstream,6,15806099,15806148,15806147,15806148,50,+,TTACTGTACTCAGGTGGTGTACCCATTAAAATTCCCACTTGTGGGTTCCG,Distal Intergenic,6,15727799,15770349,42551,1,Mdfic-204,78300,Mdfic-201;Mdfic-207;Mdfic-206,Mdfic;Mdfic;Mdfic,85438;85438;85438,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,3,16543,ENSMUSG00000041390,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16120,cg09624428,-0.00000529,0.00000199,-2.655037634,0.008339586,loss,ns,0.00000909,0.00000338,2.686660626,0.007606242,pos,ns,0.002555291,0.000990987,2.578532897,0.010383145,pos,ns,1.983671076,-0.0000805,0.0000341,-2.36178277,0.018805298,neg,ns,0.951474934,Zfp407,Zfp407_Intron,18,84450973,84451022,84450973,84450974,50,-,CGCCTCATTACTTTGATGAACTTTTTATGGTCAGCACCCATGAAGACCTC,"Intron (Zfp407-201/Zfp407, intron 2 of 2)",18,84128027,84558425,430399,2,Zfp407-201,107403,Zfp407-201;Zfp407-202,Zfp407;Zfp407,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,32,240476,ENSMUSG00000048410,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5084,cg21198882,-0.00000707,0.00000338,-2.094727465,0.037006657,loss,ns,-0.0000154,0.00000574,-2.686251161,0.007615354,neg,ns,0.005579088,0.001680561,3.319776947,0.001008369,pos,ns,2.996380393,-0.000203599,0.0000578,-3.522814063,0.000491221,neg,ns,0.942604199,Brd4,Brd4_Exon,17,32224977,32225026,32225025,32225026,50,+,GTGGTCTGAACTGTAAACAAATGATCTGGCTTCATGGCACAGCCGAGCCG,"Exon (Brd4-204/Brd4, exon 5 of 11)",17,32196274,32284097,87824,2,Brd4-201,59071,Brd4-201;Brd4-203;Brd4-202;Brd4-212;Brd4-205;Brd4-204;Brd4-210;Brd4-211,Brd4;Brd4;Brd4;Brd4;Brd4;Brd4;Brd4;Brd4,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,5,57261,ENSMUSG00000024002,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16053,cg18348774,0.0000177,0.00000334,5.306471127,0.000000213,gain,yes,-0.0000153,0.00000568,-2.685372786,0.007634934,neg,ns,-0.004442705,0.001664525,-2.669052658,0.008007071,neg,ns,2.096526325,0.00010529,0.0000572,1.839349017,0.066820029,pos,ns,0.932246079,Bnc2,Bnc2_Exon,4,84293589,84293638,84293637,84293638,50,+,AACTGCTGAAGGGTGATGATTTCCTCTTCTCGAGACATGATGGCCCAGCG,"Exon (Bnc2-201/Bnc2, exon 7 of 8)",4,84275095,84675034,399940,2,Bnc2-201,381396,Bnc2-201;Bnc2-202;Bnc2-214;Bnc2-218;Bnc2-215;Bnc2-222;Bnc2-216;Bnc2-213;Bnc2-219;Bnc2-206;Bnc2-211;Bnc2-205;Bnc2-217;Bnc2-207;Bnc2-212,Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,91,242509,ENSMUSG00000028487,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10163,cg12128839,0.000144055,0.0000145,9.926414544,2.41E-20,gain,yes,-0.0000662,0.0000247,-2.68521304,0.0076385,neg,ns,0.018338889,0.007222917,2.538986517,0.011606065,pos,ns,1.935314989,-0.000737117,0.000248396,-2.967511813,0.003235965,neg,ns,0.118968446,Gm28308,Gm28308_fiveUTR,6,52204512,52204561,52204560,52204561,50,-,TTTGTTGTCCAGTCGTAAATCCTGCCTGATGACCTCTAGAGGTAAACTCG,5' UTR,6,52163359,52213339,49981,2,Gm28308-201,8778,Gm28308-201;Hoxa3-201;Hoxa3-203;Hoxa5-201;Hoxa6-201,Gm28308;Hoxa3;Hoxa3;Hoxa5;Hoxa6,0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,21,103,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
18728,cg19075845,0.0000373,0.0000333,1.120743955,0.263264333,gain,ns,0.000151872,0.0000566,2.684993657,0.007643399,pos,ns,0.126114832,0.016571149,7.610506171,3.31E-13,pos,yes,12.48046284,-0.00551964,0.00056988,-9.685610982,1.49E-19,neg,yes,0.602424541,Gm12695,Gm12695_Intergenic_upstream,4,96969521,96969570,96969521,96969522,50,-,CGGTTACAAAACAAGATAAACATTTGGAGATGCCTCAGCTGTGTTACAGA,Distal Intergenic,4,96723647,96785186,61540,2,Gm12695-201,-184384,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,4,620779,ENSMUSG00000078639,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1300,cg22128882,0.0000213,0.00000681,3.128149394,0.001926199,gain,ns,-0.0000311,0.0000116,-2.684951343,0.007644345,neg,ns,-0.005482948,0.003391278,-1.616779079,0.106943088,neg,ns,0.970847278,0.000108647,0.000116626,0.931588925,0.352273946,pos,ns,0.114752314,Fezf2,Fezf2_Intergenic_downstream,14,12338059,12338108,12338107,12338108,50,-,TAATCTCTCATTTGTAATCAATTGTGTTGACTAAACAAAAGTCTAGGTCG,Distal Intergenic,14,12342094,12345844,3751,2,Fezf2-203,7785,Fezf2-203;Fezf2-201,Fezf2;Fezf2,0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,21,45,54713,ENSMUSG00000021743,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
15102,cg08131534,-0.000015,0.00000959,-1.568989046,0.117670618,loss,ns,0.0000437,0.0000163,2.684346652,0.007657865,pos,ns,0.006067183,0.004773198,1.27109383,0.204648214,pos,ns,0.688992042,-0.000255215,0.00016415,-1.554769241,0.121021326,neg,ns,0.668467312,Tmprss15,Tmprss15_Intergenic_upstream,16,79177480,79177529,79177528,79177529,50,+,CAGCACTTTCCCTTCAGCTCACAGATGGAGACAAGGGCTCTTTGAAGGCG,Distal Intergenic,16,78953464,79091097,137634,2,Tmprss15-202,-86383,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,19146,ENSMUSG00000022857,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15636,cg20158292,-0.0000011,0.00000169,-0.651259261,0.515361613,loss,ns,-0.0000077,0.00000287,-2.684146784,0.007662339,neg,ns,0.001339483,0.000840261,1.594128154,0.111926346,pos,ns,0.951067673,-0.0000257,0.0000289,-0.889935449,0.374190649,neg,ns,0.964231895,Nfib,Nfib_Intron,4,82494991,82495040,82494991,82494992,50,-,CGGATGCCAACCAACGAATCAAAGGCATTCAGCAACTAGACAAAGAGGGT,"Intron (Nfib-201/Nfib, intron 2 of 11)",4,82290173,82505308,215136,2,Nfib-201,10268,Nfib-201;Nfib-203;Nfib-202;Nfib-205;Nfib-206;Nfib-204;Nfib-207;Nfib-209;Nfib-210;Nfib-208;Nfib-212;Nfib-211,Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,66,18028,ENSMUSG00000008575,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8313,cg05366606,-0.0000252,0.0000114,-2.21049254,0.027801012,loss,ns,-0.0000519,0.0000194,-2.684112297,0.007663111,neg,ns,0.015610238,0.005670085,2.753087327,0.006251745,pos,ns,2.203998738,-0.00055678,0.000194994,-2.85537374,0.004588594,neg,ns,0.796928531,Zeb2,Zeb2_Intron,2,45001500,45001549,45001548,45001549,50,-,TTCAAAATGCCATGAAAAATTAATAATGATTGCCAATCAAAGCAATATCG,"Intron (Zeb2-212/Zeb2, intron 7 of 10)",2,44983632,45117395,133764,2,Zeb2-212,115846,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-227;Zeb2-216;Zeb2-229;Zeb2-218;Zeb2-222,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4269,cg25280609,-0.00000978,0.0000029,-3.373434834,0.000836611,loss,ns,0.0000132,0.00000492,2.683621301,0.007674112,pos,ns,0.000939566,0.001442287,0.651441708,0.515244024,pos,ns,0.287987037,-0.0000651,0.0000496,-1.31155218,0.190641795,neg,ns,0.922138924,Gm5064,Gm5064_Intergenic_downstream,18,28056281,28056330,28056329,28056330,50,+,CACTTGAACAGCAGGTGGGCAGACACTGAAATTTTTCAGGAGACTGAGCG,Distal Intergenic,18,28187110,28188817,1708,2,Gm5064-201,132487,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,3,271505,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14589,cg20860111,-0.00000343,0.0000012,-2.854158144,0.00460573,loss,ns,0.00000547,0.00000204,2.683603576,0.007674509,pos,ns,-0.000152503,0.000597307,-0.255317162,0.798647456,neg,ns,0.097644887,0.0000197,0.0000205,0.960154438,0.337725769,pos,ns,0.035794606,Sptb,Sptb_fiveUTR,12,76710064,76710113,76710112,76710113,50,-,AGATATAAATAACATTATCTGAGGAGGGACATTCCTGCCGGGGGACATCG,Promoter (<=1kb),12,76580488,76710547,130060,2,Sptb-201,434,Sptb-201;Sptb-202,Sptb;Sptb,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,6,20741,ENSMUSG00000021061,conserved gene but different region,12,76710102,76710748,647,*,647,53,0.680061824,0.708491736,0.081916538,1.15E-35,CpGisland,TRUE,NA,NRS
11903,cg03477439,0.0000165,0.00000943,1.745418867,0.081902771,gain,ns,-0.000043,0.000016,-2.683584701,0.007674933,neg,ns,-0.003690939,0.004694927,-0.786154786,0.432377319,neg,ns,0.364137096,0.000169568,0.000161458,1.050229101,0.294430819,pos,ns,0.782285008,Gm34424,Gm34424_Intergenic_downstream,9,61646295,61646344,61646343,61646344,50,-,AATCTCCCCAGTACAAGAAATGCTACTTAGCAGTATATCAATTGCAGGCG,Distal Intergenic,9,61533415,61534196,782,1,Gm34424-201,112929,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,6,102637673,ENSMUSG00000111381,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20279,cg19772179,-0.0000095,0.00000287,-3.311411646,0.001037931,loss,ns,-0.0000131,0.00000487,-2.683554789,0.007675603,neg,ns,-0.001374307,0.001427643,-0.962640253,0.336478372,neg,ns,0.473042846,0.00005,0.0000491,1.017982436,0.309480113,pos,ns,0.068436187,Kctd12,Kctd12_Exon,14,102982124,102982173,102982172,102982173,50,+,TAGTCGGGCAGCACGAGCTGCAAGTCCCGCAGGTAATCCAGGATGTAGCG,Promoter (<=1kb),14,102976581,102982637,6057,2,Kctd12-202,464,Kctd12-202;Kctd12-201,Kctd12;Kctd12,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,5,239217,ENSMUSG00000098557,conserved gene and region,14,102981706,102983032,1327,*,1327,169,0.7279578,0.96141282,0.127354936,1.57E-147,CpGisland,TRUE,U1,Pr-A
14376,cg13398027,-0.0000369,0.000018,-2.049571421,0.041247468,loss,ns,0.000082,0.0000306,2.683170445,0.007684226,pos,ns,0.062144502,0.008958583,6.936867073,2.34E-11,pos,yes,10.63017868,-0.000668114,0.000308085,-2.168603644,0.030872947,neg,ns,0.497471626,Smad7,Smad7_Exon,18,75394266,75394315,75394266,75394267,50,+,CGTGCAGATCAGCTTTGTGAAGGGCTGGGGCCAGTGCTACACCCGCCAGT,"Exon (Smad7-201/Smad7, exon 4 of 4)",18,75367529,75395935,28407,1,Smad7-201,26737,Smad7-201;Smad7-202;Smad7-205;Smad7-204;Smad7-203,Smad7;Smad7;Smad7;Smad7;Smad7,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,19,17131,ENSMUSG00000025880,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6976,cg19605887,-0.0000148,0.00000483,-3.0609896,0.002399078,loss,ns,0.000022,0.0000082,2.682833448,0.007691794,pos,ns,0.004542129,0.002401561,1.891323463,0.05951326,pos,ns,1.225386263,-0.000205096,0.0000826,-2.483322186,0.013544788,neg,ns,0.90062269,9330182O14Rik,9330182O14Rik_Intergenic_downstream,15,40314466,40314515,40314514,40314515,50,+,CTGTAATTAAGTCAAATAGGTTAAAGGCTTGTTATGCTAGCATTAACACG,Distal Intergenic,15,40142188,40148689,6502,1,9330182O14Rik-201,172278,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,6,328531,ENSMUSG00000094112,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13810,cg14274584,0.0000824,0.00000967,8.51397789,7.36E-16,gain,yes,-0.0000441,0.0000164,-2.682611271,0.007696787,neg,ns,0.037689266,0.004814961,7.827533332,7.93E-14,pos,yes,13.10056625,-0.000927458,0.000165586,-5.60106175,0.000000047,neg,yes,0.838042194,Sp3,Sp3_Exon,2,72970324,72970373,72970324,72970325,50,+,CGTCAAAGTTATTTGTTGGGCAGCAGTATTCTGTATTTGCAAATTCTGCA,"Exon (Sp3-202/Sp3, exon 4 of 7)",2,72936427,72980446,44020,2,Sp3-202,10073,Gm11084-201;Sp3-202;Sp3-201;Sp3-204;Sp3-205,Gm11084;Sp3;Sp3;Sp3;Sp3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,6,20687,ENSMUSG00000027109,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17061,cg11922307,-0.0000262,0.0000069,-3.793633303,0.000178488,loss,ns,-0.0000315,0.0000117,-2.682359444,0.00770245,neg,ns,-0.007725171,0.003435125,-2.248876545,0.02522227,neg,ns,1.598215836,-0.000224799,0.000118134,-1.902919102,0.057977376,neg,ns,0.68423584,Mef2d,Mef2d_Exon,3,88158265,88158314,88158265,88158266,50,-,CGAGGTGTTTGCCCTGACCCCCCAGACGGAAGAGAAATATAAAAAGATAG,"Exon (Mef2d-202/Mef2d, exon 4 of 11)",3,88142372,88172086,29715,1,Mef2d-201,15893,Mef2d-201;Mef2d-204;Mef2d-202;Mef2d-203;Mef2d-206;Mef2d-205,Mef2d;Mef2d;Mef2d;Mef2d;Mef2d;Mef2d,0;0;0;0;15691;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,10,17261,ENSMUSG00000001419,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8573,cg01585174,-0.00000644,0.00000461,-1.39821267,0.163048725,loss,ns,-0.000021,0.00000783,-2.68177071,0.007715703,neg,ns,-0.007563762,0.002293367,-3.298103443,0.001086626,neg,ns,2.963919886,0.000193096,0.0000789,2.448319159,0.014906403,pos,ns,0.918696937,Gm13475,Gm13475_Intron,2,45359846,45359895,45359846,45359847,50,+,CGTGCTTTTATAAGTATTTGAAAAGAAAATATTTTAAAGATTTGAAATAG,"Intron (Gm13479-201/Gm13479-201, intron 1 of 1)",2,45329232,45329465,234,1,Gm13475-201,30614,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,21,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21137,cg22637684,-0.000000311,0.00000466,-0.066790758,0.946791336,loss,ns,0.0000212,0.00000792,2.681655931,0.00771829,pos,ns,0.002812367,0.002320612,1.211907561,0.226470666,pos,ns,0.644988042,-0.000138822,0.0000798,-1.739494871,0.08294031,neg,ns,0.924562506,Ppfia2,Ppfia2_Exon,10,106557250,106557299,106557298,106557299,50,-,TCGAATCCCTAACAGGAGGGCTGGCTGGTTCTAAGGGGGCTGATCCACCG,"Exon (Ppfia2-201/Ppfia2, exon 3 of 32)",10,106470339,106932492,462154,1,Ppfia2-201,86911,Ppfia2-201;Ppfia2-202;Ppfia2-203,Ppfia2;Ppfia2;Ppfia2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,9,327814,ENSMUSG00000053825,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22735,cg03937152,0.0000621,0.00000755,8.229391627,5.27E-15,gain,yes,-0.0000344,0.0000128,-2.681512581,0.007721521,neg,ns,0.006288965,0.003756986,1.673939162,0.095151164,pos,ns,1.021585893,-0.000193208,0.000129202,-1.495387068,0.135830735,neg,ns,0.718843905,Meis2,Meis2_Exon,2,115866186,115866235,115866234,115866235,50,-,TTTCCCTTTAAATTTATTGACTGACTTTCCTGTCTTTCTGTCTCATGTCG,"Exon (Meis2-207/Meis2, exon 4 of 4)",2,115863064,116065047,201984,2,Meis2-201,198812,Meis2-201;Meis2-203;Meis2-205;Meis2-206;Meis2-204;Meis2-202;Meis2-208;Meis2-219;Meis2-216;Meis2-218;Meis2-214;Meis2-207;Meis2-215,Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,15,97,17536,ENSMUSG00000027210,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11073,cg05762667,-0.0000269,0.0000104,-2.587887339,0.010111283,loss,ns,0.0000473,0.0000176,2.681509973,0.00772158,pos,ns,0.018003589,0.005168897,3.48306194,0.000567023,pos,ns,3.246399185,-0.000667588,0.000177758,-3.755601925,0.000206506,neg,ns,0.8000562,Gm13518,Gm13518_Intergenic_downstream,2,56519661,56519710,56519661,56519662,50,+,CGCACACATCTCATTACAGGTGAAATATTCTAACTGCCACTATCACTGGG,Distal Intergenic,2,56039853,56040085,233,1,Gm13518-201,479808,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,37,37,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6880,cg09920422,-0.00000391,0.00000237,-1.647621984,0.100443441,loss,ns,0.0000108,0.00000403,2.681022008,0.007732588,pos,ns,0.003202181,0.001179622,2.714581434,0.007007603,pos,ns,2.154430515,-0.0000396,0.0000406,-0.975874402,0.329887604,neg,ns,0.048459701,Kdm7a,Kdm7a_Intron,6,39205433,39205482,39205481,39205482,50,+,GTTTAAATGCCTGTGAATCCCTCCCACGCCGGAGTCAAGAGGCTGTGGCG,"Intron (Kdm7a-201/Kdm7a, intron 1 of 19)",6,39136623,39206789,70167,2,Kdm7a-201,1307,Kdm7a-201,Kdm7a,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,8,338523,ENSMUSG00000042599,conserved gene and region,6,39205446,39207371,1926,*,1926,267,0.729491173,1.042169774,0.138629284,2.72E-244,CpGisland,TRUE,U1,Pr-A
15256,cg20264796,-0.000000176,0.00000783,-0.022417461,0.982129374,loss,ns,0.0000357,0.0000133,2.680549192,0.007743268,pos,ns,-0.000817164,0.003896456,-0.209719837,0.834024101,neg,ns,0.078821399,-0.0000198,0.000133999,-0.148122058,0.88234274,neg,ns,0.742789928,Lrrtm4,Lrrtm4_Exon,6,80021807,80021856,80021855,80021856,50,-,ATCATTAAGGTTCAACAGCATTCAGAAGCTCAAATCCAATCAGTTTGCCG,"Exon (Lrrtm4-208/Lrrtm4, exon 2 of 3)",6,80018877,80810143,791267,1,Lrrtm4-208,2930,Lrrtm4-208;Lrrtm4-204;Lrrtm4-202;Lrrtm4-205;Lrrtm4-203;Lrrtm4-206;Lrrtm4-207;Lrrtm4-201,Lrrtm4;Lrrtm4;Lrrtm4;Lrrtm4;Lrrtm4;Lrrtm4;Lrrtm4;Lrrtm4,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,Exon,2,4,243499,ENSMUSG00000052581,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8656,cg25327462,-0.000000951,0.00000516,-0.184147586,0.854018076,loss,ns,0.0000235,0.00000877,2.680440824,0.007745717,pos,ns,0.009199505,0.002569897,3.579717499,0.000399093,pos,ns,3.39892639,-0.000180831,0.0000884,-2.046097002,0.041590256,neg,ns,0.913257366,Btrc,Btrc_Intron,19,45494016,45494065,45494064,45494065,50,-,CTTACAATTTGCCAGGGGGTGAAGTTATTAAGTTTTAGCAGCAGCCATCG,"Intron (Btrc-204/Btrc, intron 1 of 2)",19,45363734,45507736,144003,1,Btrc-204,130282,Btrc-204;Btrc-201;Btrc-210;Btrc-202;Btrc-203;Btrc-209,Btrc;Btrc;Btrc;Btrc;Btrc;Btrc,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,63,98,12234,ENSMUSG00000025217,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16963,cg07536838,-0.0000478,0.0000238,-2.009421118,0.045358906,loss,ns,0.000108393,0.0000404,2.680388422,0.007746902,pos,ns,0.014449198,0.011847378,1.219611444,0.223539295,pos,ns,0.650646123,-0.000318383,0.00040743,-0.781442479,0.435138679,neg,ns,0.589774083,Zfp423,Zfp423_Intron,8,87707968,87708017,87708016,87708017,50,-,ATTATGACTTCATTCACTGATAAGCAACGGCATTACATAAATCTGATGCG,"Intron (Zfp423-203/Zfp423, intron 3 of 5)",8,87661810,87804439,142630,2,Zfp423-203,96422,Zfp423-203;Zfp423-202;Zfp423-201,Zfp423;Zfp423;Zfp423,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,42,53,94187,ENSMUSG00000045333,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4369,cg19195272,0.0000295,0.0000181,1.629199003,0.10428661,gain,ns,-0.0000824,0.0000308,-2.680127088,0.007752813,neg,ns,0.060766517,0.009011397,6.74329618,7.58E-11,pos,yes,10.12036564,-0.000875545,0.000309901,-2.825240051,0.005030958,neg,ns,0.531147528,Snd1,Snd1_Intron,6,28577119,28577168,28577167,28577168,50,-,GATAATGAATTGTCATGCCTCTGCTGATTATCTAACAAGTTTGTACAACG,"Intron (Snd1-203/Snd1, intron 9 of 16)",6,28480348,28877723,397376,1,Snd1-203,96771,Snd1-203;Snd1-201;Snd1-206;Snd1-211,Snd1;Snd1;Snd1;Snd1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,9,56463,ENSMUSG00000001424,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22043,cg06623258,-0.0000199,0.00000522,-3.818154827,0.000162371,loss,ns,0.0000238,0.00000887,2.680036665,0.00775486,pos,ns,0.004928601,0.002599544,1.895948762,0.058896603,pos,ns,1.229909752,-0.000242451,0.0000894,-2.712042556,0.007060225,neg,ns,0.906822376,Elavl4,Elavl4_fiveUTR,4,110290661,110290710,110290661,110290662,50,+,CGTCCTGCTGATTTCAAACATCTTGCCACAGATTTTGTTTTAAGAGAAAC,5' UTR,4,110203737,110292722,88986,2,Elavl4-206,2012,Elavl4-204;Elavl4-201;Elavl4-203;Elavl4-202;Elavl4-205;Elavl4-206;Elavl4-207;Elavl4-208;Elavl4-212;Elavl4-209,Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,7,36,15572,ENSMUSG00000028546,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16866,cg03547095,0.000000384,0.00000207,0.185815701,0.852710816,gain,ns,-0.00000942,0.00000351,-2.679971499,0.007756335,neg,ns,-0.0000647,0.001029425,-0.062856102,0.949921599,neg,ns,0.022312237,-0.000023,0.0000354,-0.650199624,0.516044836,neg,ns,0.956631756,Ythdc1,Ythdc1_threeUTR,5,86828735,86828784,86828783,86828784,50,+,GAAAACAATAGGTTCTTTCCAAAGGGGATCAAGTGGCCCTGGGAGACCCG,3' UTR,5,86804221,86836654,32434,1,Ythdc1-202,24514,Ythdc1-202;Ythdc1-203;Ythdc1-208;Ythdc1-201;Ythdc1-207;Ythdc1-206;Ythdc1-205;Ythdc1-204,Ythdc1;Ythdc1;Ythdc1;Ythdc1;Ythdc1;Ythdc1;Ythdc1;Ythdc1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,12,17,231386,ENSMUSG00000035851,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11053,cg17710254,-0.0000408,0.00000936,-4.355315531,0.0000181,loss,ns,0.0000426,0.0000159,2.67970529,0.007762363,pos,ns,0.007002476,0.004656822,1.503702877,0.13367595,pos,ns,0.873946721,-0.000473542,0.000160148,-2.956906672,0.003346152,neg,ns,0.792304956,Gm13518,Gm13518_Intergenic_downstream,2,56458531,56458580,56458579,56458580,50,+,CTGTAGTTAATCTTAGATCATTCACTCGCAAAATTAAATGAGCCAGAACG,Distal Intergenic,2,56039853,56040085,233,1,Gm13518-201,418678,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,37,37,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8610,cg01429475,0.00000013,0.00000301,0.043145348,0.965613447,gain,ns,-0.0000137,0.00000511,-2.679156672,0.007774799,neg,ns,-0.003416267,0.001495881,-2.283782986,0.023060385,neg,ns,1.637133444,0.000145367,0.0000514,2.825779948,0.005022703,pos,ns,0.905971452,Btrc,Btrc_Exon,19,45446662,45446711,45446662,45446663,50,-,CGTATGGCAGAGGGTCAGTAATCAGTGTCATCGTGCCTTTAAATCGTGTT,"Exon (Btrc-208/Btrc, exon 1 of 1)",19,45363734,45507736,144003,1,Btrc-204,82928,Btrc-204;Btrc-201;Btrc-210;Btrc-202;Btrc-203;Btrc-208;Btrc-205;Btrc-209;Gm6807-201,Btrc;Btrc;Btrc;Btrc;Btrc;Btrc;Btrc;Btrc;Gm6807,0;0;0;0;0;0;0;0;4484,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,30,98,12234,ENSMUSG00000025217,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13015,cg05637627,-0.00000957,0.00000379,-2.525228023,0.01206072,loss,ns,0.0000172,0.00000644,2.678796057,0.007782983,pos,ns,0.003240539,0.001885967,1.718237251,0.086751825,pos,ns,1.061721379,-0.0000875,0.0000649,-1.348469505,0.178491766,neg,ns,0.936822055,Gm4842,Gm4842_Intergenic_upstream,18,69130647,69130696,69130647,69130648,50,-,CGCGTCAGAATTTTAAAGTGCATTAAATAAAGGGCATTGGCACATTAATG,Distal Intergenic,18,69256288,69257122,835,1,Gm4842-201,-125641,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,10,225681,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27647,cg05800013,-0.00000938,0.0000063,-1.489921119,0.137261683,loss,ns,-0.0000287,0.0000107,-2.678680131,0.007785616,neg,ns,-0.004987673,0.003134138,-1.59140202,0.112538314,neg,ns,0.948699596,0.0000397,0.000107783,0.368046441,0.713089784,pos,ns,0.894609802,Gm20721,Gm20721_threeUTR,2,174336716,174336765,174336764,174336765,50,-,ATTAGGTGAGCTTTCAATCTCTCTTTAAAAGGGGCGGCGAAGAGGACCCG,3' UTR,2,174330319,174346712,16394,2,Gm20721-201,9947,Gm20721-201;Gnas-222;Gnas-211;Gnas-215;Gnas-214;Gnas-201;Gnas-209;Gnas-220;Gnas-223;Gnas-224;Gnas-203;Gnas-212;Gnas-221;Gnas-217;Gnas-202;Gnas-218;Gnas-207;Gnas-226;Gnas-208;Gnas-206;Gnas-205;Gnas-216,Gm20721;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,9,10,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23086,cg09899564,-0.0000268,0.00000703,-3.812728214,0.000165814,loss,ns,-0.000032,0.0000119,-2.67852301,0.007789185,neg,ns,-0.005951124,0.003499642,-1.700494829,0.090040785,neg,ns,1.04556073,0.000120127,0.000120352,0.998127872,0.318995817,pos,ns,0.787370364,Rnf220,Rnf220_Intron,4,117283306,117283355,117283354,117283355,50,+,CCTCTAACCGGTCTTGGCAGGCAATCTAATTCCTCCTGAAAAGGTCACCG,"Intron (Rnf220-201/Rnf220, intron 8 of 14)",4,117271463,117497052,225590,2,Rnf220-201,213697,Rnf220-201;Rnf220-203;Rnf220-212;Rnf220-202;Rnf220-205;Rnf220-209;Rnf220-213;Rnf220-210;Rnf220-206;Rnf220-208,Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11940,cg25937299,0.0000125,0.00000609,2.045594095,0.041640073,gain,ns,-0.0000277,0.0000103,-2.67851821,0.007789294,neg,ns,-0.000876984,0.00302921,-0.289509098,0.772385348,neg,ns,0.112165973,0.0000118,0.000104174,0.11365492,0.909584919,pos,ns,0.729139611,Palld,Palld_Intron,8,61756956,61757005,61757004,61757005,50,+,ATAACCTTCCTTTTAAATCATCTCTAACCAGCCCCAAATCACTCTGACCG,"Intron (Palld-203/Palld, intron 1 of 19)",8,61511433,61760089,248657,2,Palld-203,3084,Palld-203;Palld-204;Palld-201;Palld-208;Palld-205,Palld;Palld;Palld;Palld;Palld,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,72333,ENSMUSG00000058056,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13485,cg05573418,-0.00000903,0.00000569,-1.586126066,0.113730196,loss,ns,0.0000259,0.00000967,2.678066321,0.007799569,pos,ns,0.010019649,0.002832143,3.537833366,0.000465137,pos,ns,3.332418825,-0.000348847,0.0000974,-3.58169975,0.000396196,neg,ns,0.859454351,Adamts16,Adamts16_threeUTR,13,70770181,70770230,70770181,70770182,50,-,CGGCTATCCTCCGAGCATGGAGTCCCATCTTTGACTTTATTTGACAAAGA,3' UTR,13,70727802,70841811,114010,2,Adamts16-201,71581,Adamts16-201;Adamts16-203;Adamts16-202,Adamts16;Adamts16;Adamts16,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,7,271127,ENSMUSG00000049538,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6245,cg08602053,0.00000279,0.00000513,0.543328137,0.587294367,gain,ns,-0.0000233,0.00000871,-2.677945,0.007802329,neg,ns,0.002646737,0.002551825,1.037193616,0.30045398,pos,ns,0.522222038,-0.000239252,0.0000878,-2.726297437,0.006769325,neg,ns,0.89947981,Ankhd1,Ankhd1_Exon,18,36578626,36578675,36578674,36578675,50,-,AAATTGTCAACTGCTGATGGTAAAGCTTTTGCAGATCCTGAGGTACTCCG,"Exon (Ankhd1-205/Ankhd1, exon 3 of 5)",18,36559987,36583681,23695,1,Ankhd1-205,18639,Ankhd1-205;Ankhd1-201;Ankhd1-212;Ankhd1-208,Ankhd1;Ankhd1;Ankhd1;Ankhd1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,6,108857,ENSMUSG00000024483,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22325,cg13106512,-0.000069,0.0000168,-4.095404485,0.0000538,loss,ns,0.0000766,0.0000286,2.676844025,0.00782742,pos,ns,0.010167052,0.008379538,1.213319019,0.225931547,pos,ns,0.646023125,0.0000765,0.000288172,0.265338559,0.79092502,pos,ns,0.533942967,Esm1,Esm1_fiveUTR,13,113209630,113209679,113209678,113209679,50,-,CATCCTGGATTTCATAAACCAAAACAAGAGAGCCTGGCAGGAGGACAGCG,Promoter (<=1kb),13,113209659,113218098,8440,1,Esm1-201,0,Esm1-201;Gzmk-202,Esm1;Gzmk,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,1,71690,ENSMUSG00000042379,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8534,cg05093137,0.00000985,0.00000148,6.676064886,1.13E-10,gain,yes,-0.00000671,0.00000251,-2.676720957,0.00783023,neg,ns,-0.000336036,0.000734332,-0.457608129,0.647554558,neg,ns,0.188723636,0.0000062,0.0000253,0.245446634,0.806273035,pos,ns,0.028681175,Btrc,Btrc_Intron,19,45302441,45302490,45302489,45302490,50,+,ATATTGATGGCAGGAGCTGTGACCGCATCACTCTGCCTCCCGTTTCCACG,"Intron (Gm28578-211/Gm28578-211, intron 1 of 1)",19,45363734,45507736,144003,1,Btrc-204,-61244,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,63,98,12234,ENSMUSG00000025217,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
424,cg13403162,0.0000542,0.0000056,9.67313092,1.63E-19,gain,yes,-0.0000255,0.00000951,-2.676254532,0.007840885,neg,ns,-0.007523441,0.002786487,-2.699973816,0.007315279,neg,ns,2.135769133,0.000414417,0.0000958,4.324636145,0.0000206,pos,ns,0.856889256,Pcnx3,Pcnx3_Exon,19,5681562,5681611,5681562,5681563,50,-,CGTGCAGGGAGTCCTGGTCCAGCAGGTCAAACTGCAGTCCCCACAGCCGC,"Exon (Pcnx3-204/Pcnx3, exon 2 of 7)",19,5664635,5688908,24274,2,Pcnx3-202,7297,Pcnx3-202;Pcnx3-201;Pcnx3-210;Pcnx3-208;Pcnx3-204;Pcnx3-209;Pcnx3-212;Pcnx3-207,Pcnx3;Pcnx3;Pcnx3;Pcnx3;Pcnx3;Pcnx3;Pcnx3;Pcnx3,0;0;0;-1985;0;0;0;7084,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,7,104401,ENSMUSG00000054874,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25133,cg00594099,-0.0000123,0.0000142,-0.872517219,0.383601575,loss,ns,-0.0000643,0.000024,-2.676060279,0.007845326,neg,ns,0.061255416,0.007043444,8.696799446,2.03E-16,pos,yes,15.6920604,-0.002394549,0.000242223,-9.885704935,3.28E-20,neg,yes,0.513915122,Ahdc1,Ahdc1_Intron,4,133047412,133047461,133047412,133047413,50,+,CGCTTCAGCTGTTTATTCTTGGGCTTTAACAATTGGGATTCTGACTTGGA,"Intron (Ahdc1-210/Ahdc1, intron 2 of 3)",4,133011260,133060820,49561,1,Ahdc1-210,36152,Ahdc1-210;Ahdc1-203;Ahdc1-204;Ahdc1-205;Ahdc1-207;Ahdc1-211;Ahdc1-209;Ahdc1-206;Ahdc1-201;Ahdc1-202,Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,35,49,230793,ENSMUSG00000037692,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6708,cg03128260,0.0000947,0.0000184,5.159226092,0.000000443,gain,yes,-0.0000835,0.0000312,-2.67605146,0.007845528,neg,ns,0.052709445,0.009136143,5.769332557,1.93E-08,pos,ns,7.714983744,-0.001142938,0.000314191,-3.637715082,0.000322063,neg,ns,0.548442464,Dennd1a,Dennd1a_Intron,2,38144157,38144206,38144205,38144206,50,+,TCTTAGGCTTCTCCAAAGTCCACACAGAATAGCAAAGAACAAAACTAACG,"Intron (Dennd1a-201/Dennd1a, intron 3 of 21)",2,37798991,38287375,488385,2,Dennd1a-201,143169,Dennd1a-201;Dennd1a-207;Dennd1a-210;Dennd1a-204;Dennd1a-202;Dennd1a-209;Dennd1a-208,Dennd1a;Dennd1a;Dennd1a;Dennd1a;Dennd1a;Dennd1a;Dennd1a,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,46,227801,ENSMUSG00000035392,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21926,cg03208937,-0.00000488,0.00000221,-2.207315695,0.028024333,loss,ns,0.0000101,0.00000376,2.675928437,0.007848342,pos,ns,0.003049827,0.001100728,2.770735362,0.005930629,pos,ns,2.226899264,-0.0000969,0.0000379,-2.55887751,0.01097577,neg,ns,0.945685916,Gm9661,Gm9661_Exon,12,109733778,109733827,109733826,109733827,50,-,AGAGAAGTTGTTCGTGGTGGATTCGCTTTACTTATGACGAATCATTCACG,"Exon (Mir382-201/Mir382-201, exon 1 of 1)",12,109827003,109828124,1122,1,Gm9661-201,-93225,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,8,675987,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9236,cg21949868,-0.00000569,0.00000451,-1.260223735,0.208536466,loss,ns,0.0000205,0.00000767,2.67590719,0.007848828,pos,ns,0.002250321,0.002247025,1.001466849,0.317382223,pos,ns,0.498417402,-0.000045,0.0000773,-0.582893406,0.560388822,neg,ns,0.93874605,Smarca1,Smarca1_Exon,X,47823369,47823418,47823417,47823418,50,+,GCAGTCCTAGACTTGATAAACCAGTCAAATCTAAACTGGGGAGCATTTCG,"Exon (Smarca1-201/Smarca1, exon 22 of 24)",20,47809368,47892519,83152,2,Smarca1-201,69101,Smarca1-201;Smarca1-203;Smarca1-202,Smarca1;Smarca1;Smarca1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,93761,ENSMUSG00000031099,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21430,cg22830890,-0.0000118,0.00000239,-4.931960454,0.00000133,loss,yes,-0.0000108,0.00000405,-2.675133293,0.007866552,neg,ns,0.002285285,0.001187684,1.924152256,0.055250756,pos,ns,1.257661776,-0.000131227,0.0000408,-3.212858481,0.001452435,neg,ns,0.947853272,Rbm5,Rbm5_threeUTR,9,107742466,107742515,107742514,107742515,50,+,TCTTGTTGCCAATGTTACTGTGGTCAATGCCATCTTTGGTGGGTTGCTCG,3' UTR,9,107740371,107770996,30626,2,Rbm5-214,28481,Rbm5-214;Rbm5-219;Rbm5-224;Rbm5-210;Rbm5-201;Rbm5-205;Rbm5-207;Rbm5-209;Rbm5-215;Rbm5-211;Rbm5-222,Rbm5;Rbm5;Rbm5;Rbm5;Rbm5;Rbm5;Rbm5;Rbm5;Rbm5;Rbm5;Rbm5,0;0;0;0;0;0;1719;7507;7396;0;9395,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,11,83486,ENSMUSG00000032580,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6312,cg06744169,-0.000000964,0.00000131,-0.73359012,0.463753002,loss,ns,0.00000597,0.00000223,2.675078294,0.007867813,pos,ns,0.00179637,0.000653783,2.74765318,0.006353743,pos,ns,2.196970338,-0.0000671,0.0000225,-2.985950444,0.003052266,neg,ns,0.964857171,Tenm2,Tenm2_Intron,11,36837942,36837991,36837990,36837991,50,+,TAGCAACTGAAATGTACCTACTTAATGGAATCGATCTTTCATAAAGACCG,"Intron (Tenm2-202/Tenm2, intron 4 of 30)",11,36006656,37235882,1229227,2,Tenm2-202,397891,Tenm2-202;Tenm2-208;Tenm2-201;Tenm2-204,Tenm2;Tenm2;Tenm2;Tenm2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,47,84,23964,ENSMUSG00000049336,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10359,cg15828158,-0.000000591,0.00000162,-0.365052507,0.715321138,loss,ns,-0.00000735,0.00000275,-2.67443542,0.007882566,neg,ns,0.000755363,0.000805278,0.938014835,0.348967016,pos,ns,0.45721562,-0.0000348,0.0000277,-1.257717548,0.209440517,neg,ns,0.962707542,Snx2,Snx2_Exon,18,53210401,53210450,53210401,53210402,50,+,CGCTGTCAACAAAATGACAATCAAGATGAATGAATCGGATGCAGTAAGAG,"Exon (Snx2-201/Snx2, exon 9 of 15)",18,53176316,53220865,44550,1,Snx2-201,34085,Snx2-201;Snx2-203,Snx2;Snx2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,67804,ENSMUSG00000034484,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5909,cg14341524,0.0000917,0.0000118,7.751987152,1.31E-13,gain,yes,-0.0000538,0.0000201,-2.673563239,0.007902621,neg,ns,-0.010685786,0.005889887,-1.81425999,0.070604287,neg,ns,1.151168928,0.000615487,0.000202553,3.038649876,0.002578656,pos,ns,0.689046825,Lrrtm2,Lrrtm2_fiveUTR,18,35215000,35215049,35215000,35215001,50,+,CGAGAAACGGCACAAGAATGGATTTGCTTATGTGCTGCGACCACACAGAA,Promoter (<=1kb),18,35209003,35215024,6022,2,Lrrtm2-201,0,Ctnna1-201;Ctnna1-204;Ctnna1-210;Ctnna1-203;Ctnna1-202;Lrrtm2-201;Lrrtm2-202;Lrrtm2-203,Ctnna1;Ctnna1;Ctnna1;Ctnna1;Ctnna1;Lrrtm2;Lrrtm2;Lrrtm2,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,3,107065,ENSMUSG00000071862,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11364,cg01167862,-0.000000737,0.00000414,-0.177834112,0.858969403,loss,ns,0.0000188,0.00000704,2.673202578,0.007910927,pos,ns,0.002319519,0.002062693,1.124509852,0.261666751,pos,ns,0.582251459,0.0000527,0.0000709,0.742393842,0.458410893,pos,ns,0.534718693,Atrnl1,Atrnl1_Exon,19,57797447,57797496,57797495,57797496,50,+,GTGGCTGCTGTGGTTTGGAAGATCAAACAAAGTTGTTGGGCCTCCAGACG,"Exon (Atrnl1-201/Atrnl1, exon 26 of 29)",19,57611034,58133343,522310,1,Atrnl1-201,186413,Atrnl1-201,Atrnl1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,226255,ENSMUSG00000054843,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1529,cg02886263,0.0000086,0.00000312,2.758118797,0.006158628,gain,ns,0.0000142,0.0000053,2.672891952,0.007918087,pos,ns,0.000147571,0.001552381,0.095060853,0.924327909,pos,ns,0.034173934,-0.0000348,0.0000534,-0.651448802,0.515239452,neg,ns,0.896808955,Mrtfb,Mrtfb_Exon,16,13453842,13453891,13453842,13453843,50,-,CGCAGGGAAAATGAGGGACTTTTGGGGGCAGATGTGTTTCCATTCCACTA,"Exon (Mir365-1-201/Mir365-1-201, exon 1 of 1)",16,13358421,13417529,59109,1,Mrtfb-204,95470,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,5,239719,ENSMUSG00000009569,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23294,cg01072588,0.000117192,0.000013,9.003296356,2.27E-17,gain,yes,-0.0000591,0.0000221,-2.672484399,0.007927491,neg,ns,0.024894363,0.006478479,3.842624711,0.000147666,pos,ns,3.830718301,-0.000813295,0.000222794,-3.650430148,0.000307158,neg,ns,0.775676647,Eri3,Eri3_Intron,4,117651905,117651954,117651953,117651954,50,-,AGAGACAGCTTTAATGAGCTTCAGCTGGCGATGCCCCGAGTTACTGTGCG,"Intron (Eri3-201/Eri3, intron 8 of 8)",4,117550365,117674297,123933,1,Eri3-201,101540,Eri3-201;Eri3-206;Eri3-203,Eri3;Eri3;Eri3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,82,97,140546,ENSMUSG00000033423,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1399,cg24737665,-0.0000699,0.00000684,-10.22900676,2.37E-21,loss,yes,0.000031,0.0000116,2.672323871,0.007931197,pos,ns,0.006011904,0.003402504,1.766905886,0.078227936,pos,ns,1.106638129,-0.000418709,0.000117012,-3.578344915,0.00040111,neg,ns,0.113617056,Med14,Med14_threeUTR,X,12677576,12677625,12677624,12677625,50,+,GTCTATGGACGCCCACCAGGGGGCAGTGTAAGATTAGCCATTAAATCACG,3' UTR,20,12675369,12762073,86705,2,Med14-202,84448,1810030O07Rik-201;Med14-202;Med14-203;Med14-204,1810030O07Rik;Med14;Med14;Med14,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,7,26896,ENSMUSG00000064127,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5954,cg14136150,0.00000878,0.00000764,1.148937444,0.251467486,gain,ns,0.0000347,0.000013,2.671785708,0.007943635,pos,ns,-0.000673302,0.003804005,-0.176998227,0.859625367,neg,ns,0.065690777,-0.00010932,0.000130819,-0.835658682,0.403990556,neg,ns,0.616338196,Ddx25,Ddx25_Exon,9,35551312,35551361,35551360,35551361,50,-,AATCCTTGAGTGTCAATCATCACATCTGCTTCATCCAGGACAAACACACG,"Exon (Ddx25-201/Ddx25, exon 8 of 12)",9,35536647,35558528,21882,2,Ddx25-201,7167,Ddx25-201,Ddx25,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,30959,ENSMUSG00000032101,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23854,cg14297772,0.0000842,0.00000634,13.28015775,3.60E-32,gain,yes,-0.0000288,0.0000108,-2.671547423,0.007949148,neg,ns,0.005607682,0.003155654,1.777026519,0.07654437,pos,ns,1.116086745,0.0000117,0.000108523,0.107628193,0.914360255,pos,ns,0.093160342,En1,En1_fiveUTR,1,120602482,120602531,120602530,120602531,50,-,AAAGGCGATTAAAGGCGCTGCCAGCCTCACGCTCTGGGCACAGCTGAGCG,Promoter (<=1kb),1,120602418,120607992,5575,1,En1-201,64,En1-201,En1,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,36,13798,ENSMUSG00000058665,conserved gene and region,1,120602387,120602531,145,*,145,10,0.586206897,0.816441441,0.068965517,0.00000206,CpGisland,TRUE,U3,Pr-B
24930,cg05529086,-0.0000128,0.00000268,-4.787725484,0.00000262,loss,ns,0.0000122,0.00000456,2.671358113,0.00795353,pos,ns,0.00178569,0.001334772,1.337823283,0.181934628,pos,ns,0.740084633,-0.00000803,0.0000459,-0.174917028,0.861259017,neg,ns,0.927474445,Ptp4a2,Ptp4a2_fiveUTR,4,129839577,129839626,129839625,129839626,50,+,GCCATAATGAACCGTCCAGCCCCTGTGGAGATCTCCTATGAGAACATGCG,5' UTR,4,129820221,129849978,29758,1,Ptp4a2-201,19356,Ptp4a2-203;Ptp4a2-201;Ptp4a2-202;Ptp4a2-207;Ptp4a2-205;Ptp4a2-206,Ptp4a2;Ptp4a2;Ptp4a2;Ptp4a2;Ptp4a2;Ptp4a2,28358;0;18897;0;18856;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,1,19244,ENSMUSG00000028788,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25931,cg15618712,0.0000547,0.0000078,7.007257642,1.52E-11,gain,yes,-0.0000354,0.0000133,-2.671319544,0.007954423,neg,ns,0.007155267,0.003882116,1.843135919,0.066263687,pos,ns,1.178724405,-0.000359767,0.000133506,-2.694769412,0.007427806,neg,ns,0.062428213,Pde3a,Pde3a_Exon,6,141250189,141250238,141250237,141250238,50,-,GCTGGTGCTGAGGCTGAGGCTGGGCGTCCTCATGATCGCCTTGACTAGCG,Promoter (<=1kb),6,141249269,141507448,258180,1,Pde3a-201,920,Pde3a-201;Pde3a-202,Pde3a;Pde3a,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,54611,ENSMUSG00000041741,conserved gene and region,6,141249469,141250509,1041,*,1041,99,0.69740634,0.799154777,0.095100865,1.04E-72,CpGisland,TRUE,U3,Pr-B
8956,cg20117739,-0.000000211,0.00000164,-0.128438993,0.897884858,loss,ns,-0.00000745,0.00000279,-2.670831207,0.007965738,neg,ns,-0.002592631,0.000817079,-3.173050226,0.001659737,neg,ns,2.77996074,0.0000557,0.0000281,1.983825612,0.048157076,pos,ns,0.99027771,Kcnc1,Kcnc1_Exon,7,46427514,46427563,46427562,46427563,50,+,TACATCGAGGGCGTCTGTGTGGTCTGGTTCACCTTCGAGTTCCTCATGCG,"Exon (Kcnc1-201/Kcnc1, exon 2 of 2)",7,46396497,46433354,36858,1,Kcnc1-201,31017,Kcnc1-201;Kcnc1-203;Kcnc1-202,Kcnc1;Kcnc1;Kcnc1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,14,16502,ENSMUSG00000058975,conserved gene and region,7,46427411,46427568,158,*,158,17,0.582278481,1.271780303,0.107594937,7.61E-14,CpGisland,TRUE,U15,NS
1772,cg19748641,0.00000653,0.00000391,1.669897563,0.095949013,gain,ns,-0.0000177,0.00000664,-2.670720741,0.0079683,neg,ns,-0.006683149,0.001944985,-3.436093365,0.000670664,neg,ns,3.173494812,0.000113938,0.0000669,1.703423392,0.089491063,pos,ns,0.086352474,Kctd1,Kctd1_Promoter,18,15151217,15151266,15151217,15151218,50,+,CGCCCCATGCCTGGCACATGCGTAAAAGCGAGTTGCGCCCAAAGTCCCAG,Promoter (<=1kb),18,14968685,15151446,182762,2,Kctd1-201,180,Kctd1-201,Kctd1,0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,6,24,106931,ENSMUSG00000036225,mapped to different genes,18,15150796,15151253,458,*,458,65,0.744541485,1.024784854,0.141921397,1.05E-60,CpGisland,TRUE,U3,Pr-B
10674,cg18068695,-0.00000785,0.0000037,-2.121824381,0.034645443,loss,ns,0.0000168,0.00000629,2.669677087,0.007992537,pos,ns,0.003822141,0.001841796,2.075225376,0.038790105,pos,ns,1.41127904,-0.00000674,0.0000633,-0.106341634,0.915380081,neg,ns,0.941403741,Zfp608,Zfp608_Exon,18,54946672,54946721,54946672,54946673,50,-,CGAGTCCGAACCAAAAGCTGTTCAACCGGTGCTGCAATATTGGATGAAGA,"Exon (Zfp608-201/Zfp608, exon 3 of 10)",18,54888048,54990166,102119,2,Zfp608-201,43445,Zfp608-201;Zfp608-204;Zfp608-203,Zfp608;Zfp608;Zfp608,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,32,269023,ENSMUSG00000052713,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3124,cg00577233,0.0000607,0.000032,1.894576608,0.059078984,gain,ns,0.000145271,0.0000544,2.669551658,0.007995455,pos,ns,0.036117659,0.015942556,2.26548741,0.024172442,pos,ns,1.61667948,-0.001113893,0.000548263,-2.031674884,0.043039174,neg,ns,0.709458243,Trpm3,Trpm3_fiveUTR,19,22883901,22883950,22883949,22883950,50,+,CCAGACCAACTGAGCTTAGCTTTAGCCTGGAACAGAGTCGACATCGCTCG,5' UTR,19,22139046,22995410,856365,1,Trpm3-218,744855,Trpm3-218;Trpm3-202;Trpm3-203;Trpm3-213;Trpm3-222;Trpm3-207;Trpm3-209;Trpm3-214;Trpm3-216;Trpm3-223;Trpm3-224;Trpm3-201;Trpm3-204;Trpm3-206;Trpm3-217,Trpm3;Trpm3;Trpm3;Trpm3;Trpm3;Trpm3;Trpm3;Trpm3;Trpm3;Trpm3;Trpm3;Trpm3;Trpm3;Trpm3;Trpm3,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,12,226025,ENSMUSG00000052387,conserved gene but different region,19,22883945,22884092,148,*,148,11,0.52027027,1.141654979,0.074324324,0.000000244,CpGisland,TRUE,U15,NS
21006,cg10211416,-0.0000284,0.0000172,-1.648421553,0.100279249,loss,ns,0.000078,0.0000292,2.669402489,0.007998926,pos,ns,-0.002122241,0.008565562,-0.247764324,0.804480788,neg,ns,0.094484323,0.000263569,0.000294569,0.89476329,0.371607819,pos,ns,0.706312945,Gm19566,Gm19566_Intergenic_upstream,5,106003808,106003857,106003856,106003857,50,+,ATGTTACCATGCACGCCCAGGACATTAAAATGTTAACAGTGTTAGAATCG,Distal Intergenic,5,105980573,105981182,610,2,Gm19566-201,-22626,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,8,100503127,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17193,cg11638791,0.0000755,0.00000742,10.17185138,3.68E-21,gain,yes,-0.0000337,0.0000126,-2.668818992,0.008012516,neg,ns,-0.007124756,0.003695247,-1.928086313,0.05475755,neg,ns,1.26155599,0.0000637,0.000127079,0.501100542,0.616655991,pos,ns,0.339148039,Gm6625,Gm6625_Intergenic_downstream,8,89143903,89143952,89143951,89143952,50,+,CAATGCTGTCACCCCATTGTTCCTTTATCATCCTCCATTTTCATAAATCG,Downstream (2-3kb),8,89146787,89147058,272,2,Gm6625-201,3106,Gm6625-201,Gm6625,3106,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,5,7,625801,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9376,cg25141226,-0.00000601,0.00000289,-2.081019085,0.038252769,loss,ns,-0.0000131,0.0000049,-2.668276797,0.008025162,neg,ns,0.005585412,0.001436742,3.887552887,0.00012389,pos,ns,3.906964929,-0.000147696,0.0000494,-2.989229491,0.003020617,neg,ns,0.934441411,Tex10,Tex10_Exon,4,48468281,48468330,48468281,48468282,50,-,CGTAGCCTGAACTGTGAACTGACATTTGGCTGTGAACCCCCATTTTCATA,Promoter (<=1kb),4,48430858,48468924,38067,2,Tex10-205,594,Tex10-205;Tex10-201;Tex10-206;Tex10-204;Tex10-202,Tex10;Tex10;Tex10;Tex10;Tex10,0;0;0;0;5013,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,269536,ENSMUSG00000028345,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5624,cg08019955,-0.0000229,0.00000654,-3.494516978,0.000544126,loss,ns,0.0000297,0.0000111,2.66796836,0.008032364,pos,ns,0.01225349,0.003257083,3.762105068,0.000201438,pos,ns,3.695859549,-0.000385603,0.000112011,-3.442552917,0.000655429,neg,ns,0.84255659,Fam193a,Fam193a_Exon,5,34410611,34410660,34410659,34410660,50,-,ACACCACCCTACCCTGCTGGGGATTATTGTCTTCTGTGCAGAAGTGAACG,"Exon (Fam193a-202/Fam193a, exon 2 of 21)",5,34369933,34486456,116524,1,Fam193a-202,40678,Fam193a-202,Fam193a,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,4,231128,ENSMUSG00000037210,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
24770,cg16566466,-0.0000112,0.00000921,-1.218271465,0.224047196,loss,ns,0.0000417,0.0000156,2.667942043,0.008032979,pos,ns,0.00547909,0.004583576,1.195374524,0.232854369,pos,ns,0.632915609,-0.000336484,0.000157629,-2.134660554,0.033572808,neg,ns,0.69527556,Csmd2,Csmd2_Exon,4,128395054,128395103,128395102,128395103,50,+,CGGCGCCTGTGGAGCTCGCCTCTGCCAAGGTGTGTTGGTAGGTGGTCACG,"Exon (Csmd2-203/Csmd2, exon 21 of 25)",4,127988044,128419617,431574,1,Csmd2-203,407010,Csmd2-203;Csmd2-205,Csmd2;Csmd2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,9,329942,ENSMUSG00000028804,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8814,cg09451873,-0.00000173,0.00000359,-0.482239797,0.629975919,loss,ns,0.0000163,0.0000061,2.667737702,0.008037754,pos,ns,0.005774203,0.001787888,3.229622401,0.001372535,pos,ns,2.862476466,-0.000201671,0.0000615,-3.279984029,0.001156343,neg,ns,0.923611701,Gm13466,Gm13466_Intergenic_downstream,2,45837015,45837064,45837015,45837016,50,-,CGCTTACAGTAATGCACTAATAAGGTTAATTTATGAAGGTTCTCTTCCAG,Distal Intergenic,2,45809472,45810470,999,1,Gm13466-201,27592,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,9,666604,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26503,cg23429933,0.000174529,0.0000209,8.349611404,2.31E-15,gain,yes,-0.0000947,0.0000355,-2.667734261,0.008037834,neg,ns,0.057865686,0.010403471,5.562152127,5.76E-08,pos,ns,7.23951027,-0.002307413,0.000357774,-6.449351154,4.31E-10,neg,yes,0.341220439,Adgrl2,Adgrl2_Intron,3,148832215,148832264,148832263,148832264,50,+,TATTAACGATGCAGATGGAGCTGTCCAAATGATAAGAACAGCTCCTGACG,"Intron (Adgrl2-202/Adgrl2, intron 15 of 22)",3,148815586,148954635,139050,2,Adgrl2-202,122371,Adgrl2-210;Adgrl2-202;Adgrl2-208;Adgrl2-205;Adgrl2-217;Adgrl2-220;Adgrl2-215;Adgrl2-204;Adgrl2-212;Adgrl2-213;Adgrl2-214;Adgrl2-206;Adgrl2-209;Adgrl2-207,Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,10,99633,ENSMUSG00000028184,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25617,cg00102584,0.0000234,0.00000269,8.702529725,1.95E-16,gain,yes,-0.0000122,0.00000457,-2.667316068,0.008047615,neg,ns,0.000551684,0.001339813,0.41176222,0.680798268,pos,ns,0.166981558,0.0000178,0.0000461,0.385399133,0.700206039,pos,ns,0.063773833,Ebf3,Ebf3_Promoter,7,137321956,137322005,137322004,137322005,50,+,TGTTAGTCTAACTCTGCGATTTGAGACTTGATGTCCCCAAAGACCAGGCG,Promoter (7-8kb),7,137193721,137314445,120725,2,Ebf3-201,-7511,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,9,84,13593,ENSMUSG00000010476,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
1817,cg09216777,-0.0000039,0.00000261,-1.493377343,0.136355516,loss,ns,0.0000118,0.00000444,2.667263122,0.008048854,pos,ns,0.002434673,0.001299369,1.873734627,0.061907604,pos,ns,1.208256001,-0.0000933,0.0000447,-2.087867773,0.037625803,neg,ns,0.945789145,Foxp2,Foxp2_Intron,6,15407059,15407108,15407107,15407108,50,+,ATTGAAGTATTACATTACATAAACCACACATGAAAGAATTGCTAATTGCG,"Intron (Foxp2-207/Foxp2, intron 12 of 18)",6,14901349,15441977,540629,1,Foxp2-207,505710,Foxp2-207;Foxp2-213;Foxp2-205;Foxp2-204;Foxp2-201;Foxp2-209;Foxp2-202;Foxp2-206,Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,38,65,114142,ENSMUSG00000029563,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6997,cg16255876,-0.000213445,0.0000192,-11.09004243,2.71E-24,loss,yes,0.0000872,0.0000327,2.667200544,0.008050318,pos,ns,0.017363339,0.009579196,1.812609212,0.070859351,pos,ns,1.149602828,-0.001135348,0.000329428,-3.446426096,0.00064645,neg,ns,0.72272888,Gm7382,Gm7382_Intergenic_upstream,15,40475820,40475869,40475820,40475821,50,+,CGCTGAAAACCTTTGAAACCACAAATGCTAACCTACCTGGCCTGCAGCCA,Distal Intergenic,15,40537321,40538425,1105,1,Gm7382-201,-61452,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,22,664872,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9751,cg26131171,-0.00000429,0.00000237,-1.810029003,0.071259544,loss,ns,0.0000107,0.00000403,2.666317492,0.008071012,pos,ns,0.003334036,0.001180455,2.824365942,0.00504435,pos,ns,2.297194823,-0.000115056,0.0000406,-2.834197033,0.004895584,neg,ns,0.943084239,Trps1,Trps1_threeUTR,15,50659243,50659292,50659291,50659292,50,-,AGTTAATCTGACAGTGCATCCAGTAGCTTGTAATATCTTCTACATCTCCG,3' UTR,15,50654752,50889691,234940,2,Trps1-202,230399,Trps1-202;Trps1-206;Trps1-204;Trps1-205;Trps1-207;Trps1-201,Trps1;Trps1;Trps1;Trps1;Trps1;Trps1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,36,83925,ENSMUSG00000038679,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26865,cg21201483,-0.000000857,0.00000108,-0.792077031,0.428921449,loss,ns,-0.0000049,0.00000184,-2.666220367,0.008073291,neg,ns,-0.000965901,0.000538522,-1.793615208,0.073849135,neg,ns,1.131654586,0.0000147,0.0000185,0.792953582,0.428411321,pos,ns,0.03407825,Nol4l,Nol4l_Exon,2,153529448,153529497,153529448,153529449,50,-,CGTCTTGACCGGCACATACACCACTTGGCCCATCTTGGGTTCCCGGCCGC,Promoter (<=1kb),2,153407462,153529971,122510,2,Nol4l-201,474,Nol4l-201,Nol4l,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,14,329540,ENSMUSG00000061411,conserved gene and region,2,153528543,153530628,2086,*,2086,233,0.761744966,0.771121688,0.111697028,6.66E-188,CpGisland,TRUE,NA,NRS
12052,cg13442492,-0.0000173,0.00000879,-1.964967371,0.050310758,loss,ns,0.0000398,0.0000149,2.666162208,0.008074656,pos,ns,0.001894605,0.004374951,0.433057531,0.665274125,pos,ns,0.176999368,0.0000794,0.000150454,0.527961976,0.597903433,pos,ns,0.88371684,Efna5,Efna5_Exon,17,62607430,62607479,62607430,62607431,50,+,CGGGATGGCTCGGCTGACTCATGTACGGTGTCATCTGTTCAAATAGAAAG,"Exon (Efna5-201/Efna5, exon 5 of 5)",17,62604184,62881317,277134,2,Efna5-201,273838,Efna5-201;Efna5-202,Efna5;Efna5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,21,13640,ENSMUSG00000048915,conserved gene and region,17,62607324,62607456,133,*,133,11,0.578947368,1.015972222,0.082706767,8.11E-08,CpGisland,TRUE,U15,NS
22271,cg05156689,-0.0000453,0.0000142,-3.182205595,0.001609772,loss,ns,0.0000645,0.0000242,2.665750353,0.008084327,pos,ns,0.027286167,0.00709052,3.848260522,0.000144463,pos,ns,3.840243546,-0.000526405,0.000243842,-2.158791766,0.031633447,neg,ns,0.854249646,Tead1,Tead1_Intron,7,112797777,112797826,112797825,112797826,50,+,GTCAGATTGTTATAATTATTTAATGCCCACAATGCAGCTTTGTCCCCACG,"Intron (Tead1-203/Tead1, intron 2 of 11)",7,112679318,112899459,220142,1,Tead1-203,118459,Tead1-203;Tead1-216;Tead1-217;Tead1-201;Tead1-204;Tead1-214;Tead1-206;Tead1-202;Tead1-205;Tead1-211;Tead1-207;Tead1-210;Tead1-212;Tead1-208;Tead1-209,Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,16,21676,ENSMUSG00000055320,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24156,cg13279750,-0.00000408,0.00000719,-0.567460616,0.570811986,loss,ns,0.0000326,0.0000122,2.665538641,0.008089303,pos,ns,0.003190603,0.003578165,0.891686786,0.37325242,pos,ns,0.427997368,0.0000213,0.000123053,0.173021482,0.862747456,pos,ns,0.148242044,Gm6905,Gm6905_Intergenic_downstream,7,123031239,123031288,123031287,123031288,50,+,CAGATTTGTCTCATCACATGATGGGGGACCTGTATCATGTGATGGCTCCG,Distal Intergenic,7,123010112,123010622,511,1,Gm6905-201,21127,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,3,628696,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
12991,cg03993410,-0.00000399,0.0000048,-0.831839111,0.406140068,loss,ns,0.0000217,0.00000815,2.665494995,0.008090329,pos,ns,0.006719014,0.002387832,2.813855591,0.005207926,pos,ns,2.283335181,-0.000228232,0.0000821,-2.779338843,0.005779564,neg,ns,0.914735907,Kpna4,Kpna4_threeUTR,3,69073904,69073953,69073904,69073905,50,+,CGCCATCTTGACCTCATTTGGGCATTTTCTGTGATTCCAAATGAAATCTT,3' UTR,3,69067149,69127113,59965,2,Kpna4-201,53160,Kpna4-201;Kpna4-203,Kpna4;Kpna4,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,5,16649,ENSMUSG00000027782,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11118,cg18246525,0.00000429,0.00000516,0.830697092,0.406784083,gain,ns,0.0000234,0.00000877,2.664612907,0.008111092,pos,ns,0.0000216,0.002570611,0.008398356,0.993304562,pos,ns,0.00291757,0.000111123,0.0000884,1.2570045,0.209698254,pos,ns,0.901947188,Slc9a6,Slc9a6_Exon,X,56645808,56645857,56645856,56645857,50,-,GGTGCAATGGCATTTGCCTTGGCCATTCGAGATACTGCCACTTATGCACG,Promoter (<=1kb),20,56645848,56661381,15534,1,Slc9a6-205,0,Slc9a6-201;Slc9a6-202;Slc9a6-205,Slc9a6;Slc9a6;Slc9a6,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,236794,ENSMUSG00000060681,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5313,cg23328459,-0.00000409,0.00000337,-1.212549106,0.226225508,loss,ns,0.0000153,0.00000572,2.664150707,0.008121991,pos,ns,0.00463678,0.001677028,2.7648798,0.006035479,pos,ns,2.219288235,-0.000129046,0.0000577,-2.237560334,0.02595998,neg,ns,0.930810554,Ranbp17,Ranbp17_Intron,11,33430482,33430531,33430482,33430483,50,+,CGCTATTGTATCCCTCATGGCAGAGGAGTTTAGTGACCACTACTACATTA,"Intron (Ranbp17-202/Ranbp17, intron 14 of 27)",11,33211795,33513746,301952,2,Ranbp17-202,83215,Ranbp17-202;Ranbp17-206;Ranbp17-203,Ranbp17;Ranbp17;Ranbp17,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,31,66011,ENSMUSG00000040594,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7559,cg09391144,0.0000623,0.00000843,7.382221756,1.44E-12,gain,yes,-0.0000382,0.0000143,-2.664105061,0.008123068,neg,ns,0.025252569,0.004197726,6.015773948,5.04E-09,pos,ns,8.297526299,-0.000413524,0.000144359,-2.864542025,0.004461204,neg,ns,0.826127697,Zbtb20,Zbtb20_Intron,16,43191299,43191348,43191299,43191300,50,-,CGTTTGCCTGAGTGCCACAAAATGGTCCTGTTATTAGTCTTATTTGTGGT,"Intron (Zbtb20-209/Zbtb20, intron 4 of 7)",16,42875881,43463175,587295,1,Zbtb20-209,315418,Zbtb20-209;Zbtb20-211;Zbtb20-217;Zbtb20-218;Zbtb20-204,Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,98,56490,ENSMUSG00000022708,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8355,cg12336777,0.0000858,0.0000127,6.767535806,6.55E-11,gain,yes,-0.0000573,0.0000215,-2.663385359,0.008140067,neg,ns,0.009238041,0.006307706,1.464564163,0.144053233,pos,ns,0.841476991,-0.000223562,0.000216922,-1.030610849,0.303526749,neg,ns,0.358174805,Zeb2,Zeb2_Intron,2,45044882,45044931,45044930,45044931,50,+,GCAGATCGTGTCAACTAAAATCTGTTTGGATTTCTGTAAATTGGAGTCCG,"Intron (Zeb2-212/Zeb2, intron 3 of 10)",2,44983632,45117395,133764,2,Zeb2-212,72464,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-218;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3876,cg08046827,-0.00000126,0.00000462,-0.272773446,0.785208985,loss,ns,-0.0000209,0.00000784,-2.663173629,0.008145074,neg,ns,0.007376115,0.002298295,3.209386393,0.001469513,pos,ns,2.832826521,-0.0000504,0.000079,-0.638137384,0.523855359,neg,ns,0.930684563,Nsd3,Nsd3_Exon,8,25676658,25676707,25676658,25676659,50,+,CGAGATTAGGAGGCCTGATTGCGTTGTGTTTCCACCATTCCACAGGGTCG,"Exon (Nsd3-211/Nsd3, exon 10 of 10)",8,25601601,25677214,75614,1,Nsd3-211,75057,Nsd3-211;Nsd3-203;Nsd3-208;Nsd3-204;Nsd3-206;Nsd3-201;Nsd3-205,Nsd3;Nsd3;Nsd3;Nsd3;Nsd3;Nsd3;Nsd3,0;74374;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,14,234135,ENSMUSG00000054823,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12138,cg13416912,-0.00000198,0.00000151,-1.31054069,0.190983098,loss,ns,0.00000684,0.00000257,2.66310731,0.008146643,pos,ns,0.002155888,0.000752127,2.866386707,0.004435965,pos,ns,2.353011873,-0.000058,0.0000259,-2.24298919,0.025603762,neg,ns,0.961739334,Ino80d,Ino80d_fiveUTR,1,63093321,63093370,63093321,63093322,50,+,CGTTGGCTGTTATACTTGGCCACATATTCACATTGCTTGAAGGGGGCAGT,5' UTR,1,63047801,63114267,66467,2,Ino80d-205,20897,Ino80d-202;Ino80d-205;Ino80d-206;Ino80d-201;Ino80d-203;Ino80d-204,Ino80d;Ino80d;Ino80d;Ino80d;Ino80d;Ino80d,0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,9,12,227195,ENSMUSG00000040865,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26056,cg21953660,-0.00000413,0.00000245,-1.684219174,0.093145846,loss,ns,0.0000111,0.00000417,2.662755392,0.008154973,pos,ns,0.003411555,0.001220564,2.795063832,0.005512437,pos,ns,2.258656371,-0.000125482,0.000042,-2.989435575,0.003018638,neg,ns,0.944437404,Gm2505,Gm2505_Intergenic_upstream,3,143451836,143451885,143451884,143451885,50,-,CCCGGTTTAAATTAACAGGTAATTTGTAAATGTCACTTCAGGTTAGGCCG,Distal Intergenic,3,143872995,143873819,825,1,Gm2505-201,-421159,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,37,100039938,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18198,cg22998308,-0.0000133,0.0000105,-1.260956825,0.208272558,loss,ns,-0.0000476,0.0000179,-2.662089011,0.008170767,neg,ns,-0.003352403,0.005234613,-0.640429907,0.522366233,neg,ns,0.282024904,-0.000449607,0.000180018,-2.497565941,0.013023098,neg,ns,0.780185497,Cacna1g,Cacna1g_Exon,11,94461892,94461941,94461892,94461893,50,-,CGATGATGAGGAGGATGAAGTAGATGAAATTGTAGAAGGAATGAGCATCC,"Exon (Cacna1g-202/Cacna1g, exon 7 of 36)",11,94408391,94474100,65710,2,Cacna1g-202,12159,Cacna1g-202;Cacna1g-203;Cacna1g-205;Cacna1g-206;Cacna1g-207;Cacna1g-208;Cacna1g-209;Cacna1g-210;Cacna1g-211;Cacna1g-201;Cacna1g-204;Cacna1g-216,Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,18,12291,ENSMUSG00000020866,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26077,cg25760286,-0.00000443,0.00000409,-1.082297804,0.279961369,loss,ns,0.0000185,0.00000695,2.660957304,0.008197652,pos,ns,0.00528253,0.00203641,2.59403977,0.009935968,pos,ns,2.002789812,-0.000135692,0.00007,-1.937572247,0.053583471,neg,ns,0.92211403,Pak3,Pak3_Exon,X,143709688,143709737,143709736,143709737,50,+,TCCTTCAGACTTTGAGCATACGATTCATGTGGGGTTTGATGCAGTCACCG,"Exon (Pak3-201/Pak3, exon 3 of 16)",20,143518591,143797792,279202,1,Pak3-201,191097,Pak3-201;Pak3-207;Pak3-205;Pak3-209;Pak3-208;Pak3-204;Pak3-202;Pak3-203;Pak3-210,Pak3;Pak3;Pak3;Pak3;Pak3;Pak3;Pak3;Pak3;Pak3,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,9,18481,ENSMUSG00000031284,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7404,cg11201836,-0.0000238,0.0000119,-1.995675806,0.046843966,loss,ns,0.0000538,0.0000202,2.660900105,0.008199013,pos,ns,0.01568474,0.005925701,2.64690046,0.008538292,pos,ns,2.068629015,-0.000510744,0.000203784,-2.506295247,0.012712278,neg,ns,0.816394606,Tcerg1,Tcerg1_Exon,18,42551096,42551145,42551144,42551145,50,-,ACTGCTTTTATCAGGAGAATGTCAAAGAAGTCCTTTATGTGGATTGCCCG,"Exon (Tcerg1-203/Tcerg1, exon 12 of 16)",18,42511487,42575793,64307,1,Tcerg1-209,39609,Tcerg1-209;Tcerg1-203;Tcerg1-201;Tcerg1-202;Tcerg1-204;Tcerg1-205;Tcerg1-210;Tcerg1-206;Tcerg1-211,Tcerg1;Tcerg1;Tcerg1;Tcerg1;Tcerg1;Tcerg1;Tcerg1;Tcerg1;Tcerg1,0;0;0;0;0;14760;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,12,56070,ENSMUSG00000024498,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3428,cg03717201,0.00000315,0.00000175,1.8000452,0.072825615,gain,ns,-0.00000791,0.00000297,-2.659979069,0.008220956,neg,ns,-0.000587477,0.000870884,-0.6745756,0.500448193,neg,ns,0.300640875,-0.0000533,0.0000299,-1.778629032,0.076280535,neg,ns,0.061437622,Bcl11a,Bcl11a_fiveUTR,11,24078010,24078059,24078058,24078059,50,-,GCTCGCCCTGCCCATGTTTTGTGTGTCTCTGTCCATCCAGACTCCTGACG,Promoter (<=1kb),11,24078056,24173194,95139,1,Bcl11a-201,0,A830031A19Rik-201;Bcl11a-201;Bcl11a-203;Bcl11a-205;Bcl11a-202;Bcl11a-204,A830031A19Rik;Bcl11a;Bcl11a;Bcl11a;Bcl11a;Bcl11a,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,10,98,14025,ENSMUSG00000000861,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1590,cg15047244,-0.00000804,0.00000483,-1.666018774,0.096719773,loss,ns,0.0000218,0.0000082,2.659883629,0.008223233,pos,ns,0.007900352,0.002402252,3.288727959,0.001122197,pos,ns,2.949930995,-0.000194575,0.0000826,-2.355255077,0.019132861,neg,ns,0.904365435,Zfp521,Zfp521_Intron,18,13798495,13798544,13798495,13798496,50,+,CGGGTCTCATAATGAGAAAACTGTGATATGCAAAAACTCTGTGAAATCTT,"Intron (Zfp521-201/Zfp521, intron 5 of 7)",18,13687013,13972787,285775,2,Zfp521-201,174243,Zfp521-201;Zfp521-205;Zfp521-204,Zfp521;Zfp521;Zfp521,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,81,225207,ENSMUSG00000024420,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14033,cg08605439,-0.0000238,0.00000911,-2.610298752,0.00948569,loss,ns,0.0000412,0.0000155,2.65975792,0.008226233,pos,ns,0.002550766,0.004535901,0.562350516,0.574283632,pos,ns,0.240873562,-0.000271958,0.000155989,-1.74344186,0.082247845,neg,ns,0.758143627,Robo2,Robo2_Intron,16,74324591,74324640,74324591,74324592,50,-,CGAGTAGAGTGACTTATTAAGGGTTATGAGTCCTGGCTGGATAGCTGTAC,"Intron (Robo2-203/Robo2, intron 2 of 27)",16,73891839,74410989,519151,2,Robo2-203,86349,Robo2-203;Robo2-210;Robo2-202;Robo2-211;Robo2-206,Robo2;Robo2;Robo2;Robo2;Robo2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,11,268902,ENSMUSG00000052516,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25548,cg13935834,-0.0000202,0.0000257,-0.783195214,0.434110403,loss,ns,0.000116287,0.0000437,2.659062766,0.008242839,pos,ns,0.086298814,0.012812086,6.735734643,7.93E-11,pos,yes,10.10065621,-0.002049747,0.000440607,-4.652101913,0.00000487,neg,ns,0.668356435,Ebf3,Ebf3_Intron,7,137207505,137207554,137207505,137207506,50,-,CGCACAGGAATGTGAAGTAAGACATTTTCTTGTTAATAAAGCATTGATCC,"Intron (Ebf3-204/Ebf3, intron 10 of 15)",7,137193673,137314445,120773,2,Ebf3-204,106891,Ebf3-204;Ebf3-201;Ebf3-202;Ebf3-203;Ebf3-208;Ebf3-205,Ebf3;Ebf3;Ebf3;Ebf3;Ebf3;Ebf3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,62,84,13593,ENSMUSG00000010476,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16754,cg25035468,-0.00000158,0.00000179,-0.884373843,0.377179825,loss,ns,0.00000808,0.00000304,2.658700156,0.008251513,pos,ns,0.002638329,0.000890078,2.964153151,0.003270496,pos,ns,2.485386355,-0.0000879,0.0000306,-2.87172619,0.004363642,neg,ns,0.955415949,Tia1,Tia1_Exon,6,86419108,86419157,86419108,86419109,50,+,CGTTGTCAGCACACAGCGTTCACAAGGTAATTGTATCTTCTTAAACATAA,"Exon (Tia1-203/Tia1, exon 5 of 14)",6,86404219,86431201,26983,1,Tia1-203,14889,Tia1-203;Tia1-202;Tia1-215;Tia1-214;Tia1-218;Tia1-212;Tia1-201;Tia1-211;Tia1-221;Tia1-223;Tia1-205;Tia1-216;Tia1-206;Tia1-219;Tia1-204;Tia1-213;Tia1-227;Tia1-217;Tia1-209;Tia1-226;Tia1-207;Tia1-210;Tia1-225;Tia1-228,Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;3317;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,7,21841,ENSMUSG00000071337,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9041,cg15225054,-0.00000821,0.00000583,-1.40629602,0.160637834,loss,ns,0.0000264,0.00000991,2.658598151,0.008253954,pos,ns,0.008180565,0.002904089,2.816912511,0.00515986,pos,ns,2.287362048,-0.000290203,0.0000999,-2.90576607,0.003927271,neg,ns,0.895917369,Nova1,Nova1_threeUTR,12,46697952,46698001,46697952,46697953,50,+,CGGCAATGCTAACCACTGATTCCACGAGATACACTATTTGTCAAAACTTA,3' UTR,12,46694517,46818929,124413,2,Nova1-201,120928,Nova1-201;Nova1-204,Nova1;Nova1,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,10,24,664883,ENSMUSG00000021047,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18405,cg01394860,0.00000976,0.00000683,1.42933668,0.153914417,gain,ns,0.0000308,0.0000116,2.65713248,0.008289108,pos,ns,0.007967799,0.003399726,2.343658927,0.019727135,pos,ns,1.704935975,-0.000196893,0.000116916,-1.684048682,0.093178824,neg,ns,0.130358574,Arhgef9,Arhgef9_fiveUTR,X,95165584,95165633,95165632,95165633,50,+,TATACCAACGTCATACATATCACAGCGAGGCCATGTTGAAGCTCAAAACG,Promoter (<=1kb),20,95048935,95166361,117427,2,Arhgef9-202,728,Arhgef9-202;Arhgef9-217;Arhgef9-205;Arhgef9-207;Arhgef9-210;Arhgef9-203;Arhgef9-209;Arhgef9-206;Arhgef9-208;Arhgef9-204;Arhgef9-216;Arhgef9-219;Arhgef9-201;Arhgef9-218;Arhgef9-220;Arhgef9-213;Arhgef9-214,Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,8,14,236915,ENSMUSG00000025656,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
872,cg08618538,-0.00000496,0.0000046,-1.078021739,0.281862179,loss,ns,0.0000208,0.00000782,2.656154044,0.00831265,pos,ns,0.007759257,0.002290243,3.38796274,0.000795037,pos,ns,3.099612893,-0.000309791,0.0000788,-3.933288939,0.000103439,neg,ns,0.879923937,Zbtb10,Zbtb10_Exon,3,9264568,9264617,9264616,9264617,50,+,GACTTTAATAGTAGGCCAAATGAGAACTCTTATTGCTATCAACTTCTGCG,"Exon (Zbtb10-201/Zbtb10, exon 2 of 6)",3,9250602,9285333,34732,1,Zbtb10-201,13966,Zbtb10-201,Zbtb10,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,9,229055,ENSMUSG00000069114,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5730,cg05198393,-0.0000315,0.0000177,-1.783229645,0.075527236,loss,ns,0.0000798,0.00003,2.655391943,0.008331029,pos,ns,0.015596278,0.008801205,1.772061694,0.077366521,pos,ns,1.11144693,-0.000140839,0.000302673,-0.465317463,0.642030839,neg,ns,0.682989997,Sox2,Sox2_Intron,3,34638057,34638106,34638057,34638058,50,-,CGTGTTATTGTATTTAAAAGAACCATCTGTAGCAGAAACAATGGCATCAA,"Intron (Sox2ot-204/Sox2ot-204, intron 3 of 3)",3,34650405,34652461,2057,1,Sox2-201,-12348,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,34,62,20674,ENSMUSG00000074637,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
11803,cg09755662,0.0000056,0.00000291,1.927621722,0.054815602,gain,ns,-0.0000131,0.00000494,-2.654799101,0.008345351,neg,ns,0.00155491,0.0014461,1.075243624,0.283101818,pos,ns,0.548057342,-0.0000641,0.0000497,-1.289144216,0.198309046,neg,ns,0.922971332,Ndst1,Ndst1_Exon,18,60712749,60712798,60712749,60712750,50,-,CGTAGGCCACACAGTACTTGTCCAGCAGCTCCCGGTTCCAGGCGTCCAGG,"Exon (Ndst1-205/Ndst1, exon 2 of 15)",18,60684494,60727563,43070,2,Ndst1-202,14765,Ndst1-202;Ndst1-205;Ndst1-201;Ndst1-206;Ndst1-203,Ndst1;Ndst1;Ndst1;Ndst1;Ndst1,0;0;0;20352;35618,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,15531,ENSMUSG00000054008,conserved gene and region,18,60712716,60712914,199,*,199,11,0.567839196,0.685776942,0.055276382,0.00000442,CpGisland,TRUE,U10,Tr-S
1986,cg23383784,-0.0000319,0.00000976,-3.264271066,0.001220142,loss,ns,0.000044,0.0000166,2.654775506,0.008345921,pos,ns,0.000845687,0.004856865,0.174121947,0.861883279,pos,ns,0.064551545,-0.0000041,0.000167027,-0.024523158,0.98045109,neg,ns,0.775824387,Strn4,Strn4_threeUTR,7,16831514,16831563,16831514,16831515,50,+,CGGGGAGGTGAGCCTGGGGGACTTGGCAGATCTCACCGTCACCAACGACA,3' UTR,7,16815889,16840931,25043,1,Strn4-201,15625,Strn4-201;Strn4-202;Strn4-211;Strn4-213;Strn4-209;Strn4-203;Strn4-205;Strn4-214;Strn4-207;Strn4-204;Strn4-206,Strn4;Strn4;Strn4;Strn4;Strn4;Strn4;Strn4;Strn4;Strn4;Strn4;Strn4,0;0;15136;0;7456;0;1380;0;-1051;-1602;-4665,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,2,97387,ENSMUSG00000030374,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11520,cg19478349,0.000012,0.00000921,1.306531314,0.192340411,gain,ns,-0.0000415,0.0000156,-2.654036972,0.008363795,neg,ns,0.000273998,0.004583054,0.059784977,0.952365412,pos,ns,0.021196386,-0.0000168,0.000157611,-0.106539944,0.915222876,neg,ns,0.84445571,Neo1,Neo1_Intron,9,58931274,58931323,58931274,58931275,50,-,CGATGGGAAATAAAATAAAATGAATGAACATAAAAAAGGCCATTAAACTG,"Intron (Neo1-201/Neo1, intron 7 of 28)",9,58874687,59036441,161755,2,Neo1-201,105118,Neo1-201;Neo1-202;Neo1-206;Neo1-203;Neo1-205,Neo1;Neo1;Neo1;Neo1;Neo1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,3,18007,ENSMUSG00000032340,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23060,cg16581950,0.0000161,0.00000862,1.871769585,0.06218001,gain,ns,-0.0000388,0.0000146,-2.65365262,0.008373111,neg,ns,-0.00015376,0.004289076,-0.035849106,0.97142575,neg,ns,0.012590389,-0.000214634,0.000147501,-1.455136544,0.146643313,neg,ns,0.781620255,Taok3,Taok3_fiveUTR,5,117250903,117250952,117250903,117250904,50,+,CGGGAACAGATGTCAGGTTATAAGCGGATGCGGCGCCAGCACCAGAAGCA,5' UTR,5,117120129,117275217,155089,1,Taok3-203,130774,Taok3-203;Taok3-210;Taok3-201;Taok3-208;Taok3-202,Taok3;Taok3;Taok3;Taok3;Taok3,0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,11,20,330177,ENSMUSG00000061288,conserved gene and region,5,117250755,117251050,296,*,296,22,0.648648649,0.709368192,0.074324324,3.15E-14,CpGisland,TRUE,U10,Tr-S
22537,cg12347497,-0.0000668,0.000021,-3.179556928,0.001624082,loss,ns,0.0000947,0.0000357,2.652464283,0.008401972,pos,ns,0.068120092,0.010457821,6.513794141,2.96E-10,pos,ns,9.529165733,-0.002808636,0.000359644,-7.809498266,8.94E-14,neg,yes,0.651114384,Wwox,Wwox_Intron,8,114997835,114997884,114997883,114997884,50,+,ATTGAAAACTCATTACAAGCTGTTTAGACTCTGACTTTGACTTTTGCTCG,"Intron (Wwox-201/Wwox, intron 8 of 8)",8,114439655,115352708,913054,1,Wwox-201,558180,Wwox-201;Wwox-204;Wwox-209,Wwox;Wwox;Wwox,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,32,32,80707,ENSMUSG00000004637,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18615,cg19408827,0.000147402,0.0000135,10.90847861,1.15E-23,gain,yes,-0.0000609,0.000023,-2.651797604,0.008418202,neg,ns,0.004932412,0.006725353,0.73340563,0.463865323,pos,ns,0.333608093,0.000154647,0.000231284,0.668642776,0.504220962,pos,ns,0.625810771,Hoxb3,Hoxb3_Promoter,11,96323184,96323233,96323232,96323233,50,-,ATGTGAGAATTATACAGAAAACCATTAATCACTTCTTTTCTTTAAATACG,Promoter (<=1kb),11,96323326,96347930,24605,1,Hoxb3-202,-142,Hoxb3-202;Hoxb3-203;Hoxb4-201,Hoxb3;Hoxb3;Hoxb4,0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,19,15410,ENSMUSG00000048763,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
16434,cg14181437,-0.0000172,0.00000875,-1.964389202,0.050378048,loss,ns,0.0000394,0.0000149,2.650863484,0.008440991,pos,ns,0.007264758,0.004355118,1.668096658,0.096306257,pos,ns,1.016345495,-0.000269185,0.000149772,-1.797299555,0.073261228,neg,ns,0.829774264,Cntln,Cntln_Intron,4,84988046,84988095,84988046,84988047,50,-,CGTTGTTGTTTTTTTCATTACCTGGCTTCACATAAACACAGGTGGCGTAG,"Intron (Cntln-201/Cntln, intron 8 of 25)",4,84884309,85131921,247613,1,Cntln-201,103737,Cntln-201;Cntln-204,Cntln;Cntln,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,25,338349,ENSMUSG00000038070,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8041,cg17944695,-0.0000043,0.00000483,-0.889310635,0.374525729,loss,ns,0.0000218,0.00000821,2.650568289,0.008448204,pos,ns,0.004475996,0.002404176,1.861758882,0.063583265,pos,ns,1.196657178,0.000102943,0.0000827,1.245089193,0.214039325,pos,ns,0.923990328,Pax2,Pax2_Intergenic_upstream,19,44699212,44699261,44699212,44699213,50,+,CGGAAGGAAAGTGATATGCACTCAAAAATTTTAATAACCTATTAAGTTAC,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-56784,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
8662,cg13193654,-0.00000379,0.00000602,-0.629189563,0.52968834,loss,ns,0.0000271,0.0000102,2.650254161,0.008455886,pos,ns,0.011494211,0.002998345,3.833518342,0.000152985,pos,ns,3.815351138,-0.000326761,0.000103113,-3.168964043,0.001682497,neg,ns,0.874851039,Btrc,Btrc_Intron,19,45494365,45494414,45494413,45494414,50,-,AAAGGCTGTGTCCTGAAATGATTAGCACAGTGAAATTTAAACCATTAACG,"Intron (Btrc-204/Btrc, intron 1 of 2)",19,45363734,45507736,144003,1,Btrc-204,130631,Btrc-204;Btrc-201;Btrc-210;Btrc-202;Btrc-203;Btrc-209,Btrc;Btrc;Btrc;Btrc;Btrc;Btrc,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,63,98,12234,ENSMUSG00000025217,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25498,cg16382039,-0.00000459,0.00000166,-2.755300254,0.006210635,loss,ns,0.00000749,0.00000283,2.65001555,0.008461726,pos,ns,0.001122952,0.000828257,1.35580073,0.176149411,pos,ns,0.754118806,-0.0000317,0.0000285,-1.113732639,0.266256691,neg,ns,0.960668642,Mgmt,Mgmt_Intron,7,136976902,136976951,136976950,136976951,50,-,ATCACAAAATGTTCTTGGTCAAAATTGGCTTGAGGCAAGTGATATCTTCG,"Intron (Mgmt-201/Mgmt, intron 2 of 4)",7,136894614,137130266,235653,1,Mgmt-201,82288,Mgmt-201,Mgmt,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,16,17314,ENSMUSG00000054612,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4539,cg08735040,-0.00000839,0.00000554,-1.515616749,0.130635265,loss,ns,0.0000249,0.0000094,2.649834376,0.008466162,pos,ns,0.006679326,0.00275514,2.424314814,0.01590891,pos,ns,1.798359562,-0.000202231,0.0000947,-2.134389569,0.033595154,neg,ns,0.913977547,Ccdc88a,Ccdc88a_Exon,11,29499341,29499390,29499389,29499390,50,-,CATCCTTTGAAGACATAAGTCCACAAGGTGTTAGTGATGATTCTAGTACG,"Exon (Ccdc88a-201/Ccdc88a, exon 27 of 32)",11,29373658,29510808,137151,1,Ccdc88a-201,125683,Ccdc88a-201;Ccdc88a-208;Ccdc88a-203;Ccdc88a-205;Ccdc88a-206,Ccdc88a;Ccdc88a;Ccdc88a;Ccdc88a;Ccdc88a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,6,108686,ENSMUSG00000032740,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9026,cg26419237,-0.0000681,0.0000116,-5.889507484,1.01E-08,loss,yes,0.000052,0.0000196,2.649639677,0.008470931,pos,ns,-0.002824055,0.005752636,-0.490915066,0.623833856,neg,ns,0.20493106,0.0000472,0.000197833,0.238744368,0.811461559,pos,ns,0.525646148,Gm8863,Gm8863_Exon,9,46610251,46610300,46610251,46610252,50,-,CGAGATGTATTACTCAGGGATTGCCATGGTAACATCTTCAGGTTACCAGG,"Exon (Gm48945-201/Gm48945-201, exon 1 of 2)",9,46713233,46714158,926,2,Gm8863-201,103907,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,20,667890,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8755,cg27014350,0.000077,0.0000117,6.573856501,2.08E-10,gain,yes,-0.0000527,0.0000199,-2.649502576,0.008474291,neg,ns,-0.005834666,0.005827739,-1.001188675,0.317516447,neg,ns,0.498233773,-0.0000335,0.000200415,-0.167080465,0.86741567,neg,ns,0.510199608,Gm12412,Gm12412_Intron,4,45713981,45714030,45713981,45713982,50,+,CGTCTGCCAGCTCTAAAGTGTCTTTTTAATTGCATCTAATTTGGCCTCAT,"Intron (Gm829-202/Gm829-202, intron 1 of 2)",4,45776882,45777209,328,2,Gm12412-201,63179,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,2,100040580,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16843,cg22719669,-0.0000359,0.0000121,-2.957139272,0.003343698,loss,ns,0.0000546,0.0000206,2.649418008,0.008476365,pos,ns,-0.005634976,0.006035504,-0.933638002,0.351217283,neg,ns,0.454424121,-0.0000418,0.00020756,-0.201286908,0.840606248,neg,ns,0.674280716,Il1rapl1,Il1rapl1_threeUTR,X,86747077,86747126,86747125,86747126,50,+,GCTACAAAGAAATTCCAAAAAACATATGTACAAGACCCTGTTTTTCCTCG,3' UTR,20,86740870,88115645,1374776,2,Il1rapl1-203,1368519,Il1rapl1-203;Il1rapl1-201,Il1rapl1;Il1rapl1,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,18,331461,ENSMUSG00000052372,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21087,cg16787246,-0.0000205,0.0000106,-1.931849456,0.054289229,loss,ns,0.0000477,0.000018,2.649360207,0.008477782,pos,ns,0.013340504,0.005279351,2.526921098,0.012003928,pos,ns,1.920676604,-0.000797058,0.000181556,-4.390140932,0.0000156,neg,ns,0.715972666,Usp24,Usp24_Exon,4,106402124,106402173,106402172,106402173,50,-,GTGCCGCCATCAGTCAACAGGACTTTCATCCAAAGTATGGAAAATGCACG,"Exon (Usp24-204/Usp24, exon 41 of 68)",4,106316213,106441317,125105,1,Usp24-204,85911,Usp24-204;Usp24-201,Usp24;Usp24,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,5,329908,ENSMUSG00000028514,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20274,cg15055182,0.0000415,0.00000338,12.30069359,1.37E-28,gain,yes,-0.0000152,0.00000574,-2.649315869,0.008478869,neg,ns,-0.003880018,0.001680753,-2.308499403,0.021629093,neg,ns,1.664961692,0.000120746,0.0000578,2.088998841,0.037523109,pos,ns,0.042498435,Hoxc5,Hoxc5_Exon,15,102981678,102981727,102981726,102981727,50,+,ACTATTACGTGGACTCGCTCATCTCTCACGACAATGAAGACCTCCTAGCG,"Exon (Hoxc9-201/Hoxc9, exon 2 of 3)",15,102967443,103015676,48234,1,Hoxc5-202,14235,Hoxc5-202;Hoxc9-202;Hoxc9-201,Hoxc5;Hoxc9;Hoxc9,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,72,134,15424,ENSMUSG00000022485,conserved gene and region,15,102981651,102982178,528,*,528,70,0.696969697,1.109010712,0.132575758,6.92E-63,CpGisland,TRUE,U3,Pr-B
19554,cg27207181,-0.00000157,0.00000426,-0.36754362,0.71346436,loss,ns,0.0000192,0.00000724,2.649125669,0.008483535,pos,ns,-0.000421584,0.002119681,-0.198890129,0.84247907,neg,ns,0.074440879,0.000085,0.0000729,1.165955721,0.244528609,pos,ns,0.938344901,Cldn18,Cldn18_Intron,9,99744719,99744768,99744719,99744720,50,-,CGACTGCATCAGTCATTCATTCACAGGCGCAAGGTCTAAATTGCAGAACC,"Intron (Gm16004-201/Gm16004-201, intron 2 of 2)",9,99691820,99717267,25448,2,Cldn18-202,-27501,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,3,56492,ENSMUSG00000032473,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25547,cg14748273,-0.0000446,0.0000248,-1.795991728,0.073469475,loss,ns,0.000111809,0.0000422,2.64897437,0.008487248,pos,ns,0.079953314,0.012365678,6.465744464,3.92E-10,pos,ns,9.407243393,-0.001720186,0.000425255,-4.045072283,0.0000661,neg,ns,0.699181748,Ebf3,Ebf3_Intron,7,137207491,137207540,137207491,137207492,50,+,CGGAGATAAAGGTCCGCACAGGAATGTGAAGTAAGACATTTTCTTGTTAA,"Intron (Ebf3-204/Ebf3, intron 10 of 15)",7,137193673,137314445,120773,2,Ebf3-204,106905,Ebf3-204;Ebf3-201;Ebf3-202;Ebf3-203;Ebf3-208;Ebf3-205,Ebf3;Ebf3;Ebf3;Ebf3;Ebf3;Ebf3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,62,84,13593,ENSMUSG00000010476,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14050,cg04023117,-0.00000634,0.00000375,-1.689900679,0.092052264,loss,ns,0.0000169,0.00000638,2.648967402,0.008487419,pos,ns,0.004453619,0.001868108,2.384026071,0.017725838,pos,ns,1.751393219,-0.000145792,0.0000642,-2.269341134,0.023934393,neg,ns,0.913989968,Lnpk,Lnpk_Intergenic_downstream,2,74490717,74490766,74490717,74490718,50,+,CGGCTGCTCCATAAGCACTGCTGATTTATAGGGCTGTTTATGACAGAAAG,Distal Intergenic,2,74520341,74533106,12766,2,Lnpk-204,42340,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,15,16,69605,ENSMUSG00000009207,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24589,cg00006213,0.000018,0.0000049,3.673743953,0.0002815,gain,ns,-0.000022,0.00000832,-2.648920464,0.008488571,neg,ns,-0.002366021,0.00243746,-0.970691191,0.332458833,neg,ns,0.478262124,0.000162829,0.0000838,1.94251093,0.052980616,pos,ns,0.891105305,Sfpq,Sfpq_Intron,4,127032720,127032769,127032720,127032721,50,-,CGTAGTACCGCAAATGGCAATGGACATTAGGACCCGGATGTAGTATTCCT,"Intron (Sfpq-206/Sfpq, intron 7 of 9)",4,127023527,127037013,13487,1,Sfpq-206,9193,Sfpq-201;Sfpq-206;Sfpq-204,Sfpq;Sfpq;Sfpq,0;0;6764,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,12,71514,ENSMUSG00000028820,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9391,cg19146382,0.00000194,0.00000284,0.683729947,0.494656452,gain,ns,0.0000128,0.00000483,2.648389619,0.008501612,pos,ns,0.00614366,0.001415385,4.340628498,0.0000193,pos,ns,4.715401583,-0.000100796,0.0000487,-2.070791996,0.039205618,neg,ns,0.921998972,Tenm3,Tenm3_Intron,8,48596583,48596632,48596631,48596632,50,+,CATACACTGTCAACTTCATTTGTACTTGATCCATAAAAAGAGTTACATCG,"Intron (Tenm3-201/Tenm3, intron 2 of 28)",8,48227682,48674690,447009,2,Tenm3-201,78058,Tenm3-201;Tenm3-206,Tenm3;Tenm3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,39,23965,ENSMUSG00000031561,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6110,cg04602433,-0.00000916,0.00000541,-1.691717188,0.091704815,loss,ns,-0.0000244,0.0000092,-2.648373441,0.00850201,neg,ns,-0.002720829,0.002694923,-1.00961279,0.313468217,neg,ns,0.503806486,0.00000826,0.0000927,0.089154648,0.929016578,pos,ns,0.806956777,Rpl17-ps9,Rpl17-ps9_Intergenic_upstream,7,36078266,36078315,36078266,36078267,50,-,CGTGATTAGCGGCTTGGTTAAGAAGTAAGACACACACATTGTAATGCATG,Distal Intergenic,7,36118274,36118828,555,1,Rpl17-ps9-201,-40008,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,14,22,100043872,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2458,cg00427871,-0.00000569,0.00000435,-1.310171826,0.191107674,loss,ns,0.0000195,0.00000738,2.647347672,0.008527261,pos,ns,0.002748753,0.002163049,1.270777368,0.204760659,pos,ns,0.688753482,-0.0000388,0.0000744,-0.521415188,0.602449869,neg,ns,0.563908155,Glns-ps1,Glns-ps1_Intergenic_upstream,11,19599789,19599838,19599789,19599790,50,+,CGCAGGTGCTGCAGGAAGTATGTTAATTTAAGATCACATCTTACCAATTC,Distal Intergenic,11,19720355,19721472,1118,1,Glns-ps1-201,-120517,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,2,14646,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U14,Hc-H
20948,cg12929402,0.0000365,0.00000423,8.635747997,3.13E-16,gain,yes,-0.000019,0.00000718,-2.646658229,0.008544271,neg,ns,-0.004104709,0.002104431,-1.950507456,0.052016576,neg,ns,1.283858235,0.000268333,0.0000724,3.707731977,0.000247688,pos,ns,0.921999426,Elp4,Elp4_Intron,2,105804743,105804792,105804791,105804792,50,+,TGGAGGGCTGTACACATGCTCTTGGGGGCTCTTTAACAGGCTTCTTGGCG,"Intron (Elp4-202/Elp4, intron 7 of 9)",2,105701027,105904564,203538,2,Elp4-202,99772,Elp4-202;Elp4-201;Elp4-204,Elp4;Elp4;Elp4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,16,77766,ENSMUSG00000027167,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18055,cg25762464,-0.00000524,0.00000369,-1.420735397,0.156398739,loss,ns,0.0000166,0.00000627,2.646277038,0.008553689,pos,ns,0.003424333,0.001837406,1.863677368,0.063312322,pos,ns,1.198511757,-0.000151509,0.0000632,-2.397743151,0.017087692,neg,ns,0.908730758,Pola1,Pola1_Intron,X,93429282,93429331,93429282,93429283,50,+,CGTCTCTCCAGCTTAAATGCAGCTGCCTCTTTCAATGCCGCAAATGGGTA,"Intron (Pola1-201/Pola1, intron 34 of 36)",20,93304767,93632155,327389,2,Pola1-201,202824,Pola1-201,Pola1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,59,62,18968,ENSMUSG00000006678,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23760,cg15012766,-0.000000428,0.000000881,-0.485544624,0.627633049,loss,ns,-0.00000396,0.0000015,-2.646258162,0.008554156,neg,ns,0.000138062,0.000438503,0.314847788,0.753089039,pos,ns,0.123153674,-0.00000832,0.0000151,-0.551962835,0.581371504,neg,ns,0.014717697,Foxo6,Foxo6_Intron,4,120282549,120282598,120282597,120282598,50,+,TCTCTTTAAATTAGTCTGTCTGCAATTACCGCCTGGCACGGCGCTGCCCG,"Intron (Foxo6-201/Foxo6, intron 1 of 1)",4,120267079,120287349,20271,2,Foxo6-201,4751,Foxo6-201,Foxo6,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,14,42,329934,ENSMUSG00000052135,conserved gene and region,4,120282454,120283157,704,*,704,60,0.700284091,0.697259822,0.085227273,2.40E-41,CpGisland,TRUE,U3,Pr-B
18981,cg01851187,-0.0000497,0.00000606,-8.214124998,5.86E-15,loss,yes,0.0000272,0.0000103,2.646055567,0.008559165,pos,ns,-0.001456558,0.003013825,-0.483292309,0.629229361,neg,ns,0.201191021,-0.000144476,0.000103645,-1.393951438,0.16433064,neg,ns,0.889651191,Mitf,Mitf_Intergenic_downstream,6,98106261,98106310,98106309,98106310,50,+,AAAAGAGGTCACTGGTCTTTCCTTTAATTTCTGTCACAGGCTGCAGGCCG,Distal Intergenic,6,97991921,98018175,26255,1,Mitf-208,114340,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,16,17342,ENSMUSG00000035158,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22916,cg11857212,0.0000296,0.00000483,6.127894212,2.70E-09,gain,yes,-0.0000217,0.0000082,-2.645961013,0.008561504,neg,ns,-0.003709627,0.002402473,-1.544087203,0.123587396,neg,ns,0.90802582,-0.0000593,0.0000826,-0.717688799,0.47348966,neg,ns,0.862706376,Plekha7,Plekha7_Exon,7,116148275,116148324,116148275,116148276,50,-,CGTGCTGACTTCTTCAGCACTTTGTAAAGCACGTTGATCAAAGGTTCATT,"Exon (Plekha7-219/Plekha7, exon 15 of 19)",7,116123485,116237812,114328,2,Plekha7-210,89488,Plekha7-210;Plekha7-203;Plekha7-201;Plekha7-205;Plekha7-202;Plekha7-207;Plekha7-206;Plekha7-219;Plekha7-213,Plekha7;Plekha7;Plekha7;Plekha7;Plekha7;Plekha7;Plekha7;Plekha7;Plekha7,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,233765,ENSMUSG00000045659,conserved gene and region,7,116148129,116148307,179,*,179,12,0.586592179,0.779956427,0.067039106,0.000000178,CpGisland,TRUE,U11,Tr-P
2760,cg00860188,0.00000657,0.00000348,1.889186895,0.059799924,gain,ns,-0.0000156,0.00000591,-2.645815377,0.008565108,neg,ns,-0.00277936,0.001732021,-1.604691452,0.109579955,neg,ns,0.960268882,0.00000202,0.0000596,0.033950464,0.972938501,pos,ns,0.886872881,Smarca4,Smarca4_Exon,9,21685990,21686039,21686038,21686039,50,+,GCTGTCCTATTTTACTACTATTGACCCTGAAGGCCATCGAGGAGGGCACG,"Exon (Smarca4-201/Smarca4, exon 29 of 34)",9,21616169,21704217,88049,1,Smarca4-201,69821,Smarca4-201;Smarca4-202;Smarca4-204;Smarca4-203,Smarca4;Smarca4;Smarca4;Smarca4,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,6,20586,ENSMUSG00000032187,conserved gene but different region,9,21686027,21686185,159,*,159,14,0.616352201,0.946428571,0.088050315,3.20E-10,CpGisland,TRUE,U10,Tr-S
27206,cg02871478,-0.0000237,0.0000251,-0.947602896,0.344069733,loss,ns,0.000112629,0.0000426,2.645377801,0.008575943,pos,ns,0.014490673,0.012473278,1.161737336,0.246235853,pos,ns,0.608648711,0.0000666,0.000428955,0.155235386,0.87673678,pos,ns,0.47453381,Top1,Top1_Intron,2,160579261,160579310,160579261,160579262,50,+,CGATCATAAAAGGAATTAATAGTTGATTCGCTGTATAATTTCCTAGTTCA,"Intron (Gm14221-201/Gm14221-201, intron 1 of 2)",2,160645888,160722764,76877,1,Top1-201,-66578,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,8,21969,ENSMUSG00000070544,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
2513,cg23676799,-0.0000342,0.0000143,-2.392826422,0.017314061,loss,ns,0.0000643,0.0000243,2.645295681,0.008577978,pos,ns,-0.006503792,0.007118095,-0.913698393,0.36158543,neg,ns,0.441789078,0.000129601,0.000244791,0.529437386,0.596880996,pos,ns,0.501510077,Anxa1,Anxa1_Intron,19,20122571,20122620,20122571,20122572,50,+,CGCCAATGTTTCCATGGAAACCTCTGTCCACTACAGAATATACTAGAGCA,"Intron (Gm32629-201/Gm32629-201, intron 1 of 2)",19,20373556,20375587,2032,2,Anxa1-202,252967,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,8,16952,ENSMUSG00000024659,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7420,cg03637267,-0.0000147,0.00000622,-2.369556799,0.018421632,loss,ns,-0.0000279,0.0000106,-2.645156366,0.008581431,neg,ns,0.009001067,0.003094822,2.908427742,0.003894888,pos,ns,2.409504978,-0.000444388,0.000106431,-4.17537653,0.0000387,neg,ns,0.708344794,R3hcc1l,R3hcc1l_Exon,19,42590613,42590662,42590613,42590614,50,-,CGGTTGGAAGCCAAGCAACGGGAAGACATCTGGGAAGGCAGAGACCAGTC,"Exon (R3hcc1l-201/R3hcc1l, exon 7 of 7)",19,42518759,42592343,73585,1,R3hcc1l-201,71854,Loxl4-201;Loxl4-203;Loxl4-205;R3hcc1l-201;R3hcc1l-202,Loxl4;Loxl4;Loxl4;R3hcc1l;R3hcc1l,22151;22151;17869;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,13,52013,ENSMUSG00000025184,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20078,cg12877767,0.0000146,0.00000802,1.822368132,0.069362448,gain,ns,0.000036,0.0000136,2.644572483,0.008595917,pos,ns,0.002280502,0.003993511,0.571051864,0.568378226,pos,ns,0.245362568,0.0000977,0.000137337,0.711226262,0.47747884,pos,ns,0.726026316,Fjx1,Fjx1_Promoter,2,102458062,102458111,102458062,102458063,50,+,CGACGTGGCTAAGCTCTTAGGGTGATAATGTGTCAAGACCAATTGAGGCT,Promoter (5-6kb),2,102449366,102452499,3134,2,Fjx1-201,-5563,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,1,14221,ENSMUSG00000075012,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
264,cg10405727,0.000102698,0.0000091,11.28557647,5.63E-25,gain,yes,-0.0000409,0.0000155,-2.643374024,0.008625719,neg,ns,-0.019928263,0.004529127,-4.400022565,0.0000149,neg,ns,4.826652107,0.000766164,0.000155756,4.918992416,0.00000141,pos,yes,0.853373182,Gm4828,Gm4828_Intergenic_downstream,17,4907142,4907191,4907142,4907143,50,-,CGCTTAGAAATAGAAATGCATTTTCAATAAGTATTTATTATGTTGTTCTG,Distal Intergenic,17,4880626,4881115,490,1,Gm4828-201,26565,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,3,224460,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22179,cg09861427,-0.000024,0.00000782,-3.064674632,0.002370586,loss,ns,0.0000351,0.0000133,2.642670464,0.008643258,pos,ns,0.010291733,0.003894516,2.642621706,0.008644474,pos,ns,2.063261416,-0.000409376,0.000133932,-3.056594474,0.002433472,neg,ns,0.846498203,Hdx,Hdx_Exon,X,111671431,111671480,111671479,111671480,50,+,TCATAATAACGCTGTAAAATCCTTTGTTGTTCTACAGTAAATACAGAACG,"Exon (Hdx-202/Hdx, exon 2 of 10)",20,111569931,111697079,127149,2,Hdx-202,25599,Hdx-202;Hdx-201,Hdx;Hdx,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,8,245596,ENSMUSG00000034551,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17142,cg27293068,0.0000722,0.0000239,3.024636845,0.00269752,gain,ns,-0.000107089,0.0000405,-2.642402663,0.008649942,neg,ns,0.03721494,0.011873119,3.134386249,0.001886963,pos,ns,2.724236671,-0.000393042,0.000408316,-0.962592878,0.336502117,neg,ns,0.786007747,Msi2,Msi2_Intron,11,88714867,88714916,88714915,88714916,50,-,TTAAGGTAACAGTAAACAAGATCCTCGTTTCCATGTCAATAAACCAACCG,"Intron (Msi2-203/Msi2, intron 4 of 13)",11,88339382,88718229,378848,2,Msi2-203,3313,Msi2-203;Msi2-201;Msi2-205;Msi2-206;Msi2-202;Msi2-204,Msi2;Msi2;Msi2;Msi2;Msi2;Msi2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,21,36,76626,ENSMUSG00000069769,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1341,cg24181435,0.0000228,0.0000196,1.161997952,0.246130135,gain,ns,0.0000881,0.0000333,2.642371086,0.00865073,pos,ns,0.015655526,0.009765749,1.603105507,0.109929722,pos,ns,0.958884869,-0.000095,0.000335843,-0.282903469,0.777439647,neg,ns,0.404000975,Cadps,Cadps_Intron,14,12389278,12389327,12389326,12389327,50,+,TGGTAGTTTTTTTGTGTGTGAACAAGTGCCATACAACAGATTGAGCCTCG,"Intron (Cadps-210/Cadps, intron 27 of 28)",14,12372563,12823053,450491,2,Cadps-210,433726,Cadps-210;Cadps-202;Cadps-203;Cadps-204;Cadps-201;Cadps-212;Cadps-208,Cadps;Cadps;Cadps;Cadps;Cadps;Cadps;Cadps,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,34,27062,ENSMUSG00000054423,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7313,cg15159280,0.0000525,0.0000078,6.734222087,8.00E-11,gain,yes,0.000035,0.0000132,2.642139094,0.008656525,pos,ns,0.013607515,0.003879772,3.507297703,0.000519602,pos,ns,3.28432878,-0.000181175,0.000133425,-1.3578754,0.175490744,neg,ns,0.265791683,Gm8176,Gm8176_Exon,1,42261903,42261952,42261951,42261952,50,+,GGACAGTGCAGACTAAATAAAATTTCATTTTGATTTGGCCTCCCGCTGCG,"Exon (Gm28175-201/Gm28175-201, exon 1 of 1)",1,42179290,42180388,1099,2,Gm8176-201,-81515,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,17,666582,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15336,cg06497069,0.000031,0.00000802,3.858912333,0.000138587,gain,ns,0.000036,0.0000136,2.64203517,0.008659122,pos,ns,0.004698239,0.003993001,1.176618576,0.240250466,pos,ns,0.619335762,-0.0000888,0.000137319,-0.646909929,0.518168939,neg,ns,0.769709179,Cacna1i,Cacna1i_Exon,15,80389722,80389771,80389722,80389723,50,+,CGTCTCTTTAATCATCAAGGACTCCTTGGAGGGGGAGCTGACCATCATCG,"Exon (Cacna1i-202/Cacna1i, exon 33 of 37)",15,80287238,80398279,111042,1,Cacna1i-202,102484,Cacna1i-202;Cacna1i-205;Cacna1i-203;Cacna1i-204;Cacna1i-206;Cacna1i-201,Cacna1i;Cacna1i;Cacna1i;Cacna1i;Cacna1i;Cacna1i,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,11,239556,ENSMUSG00000022416,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22061,cg17885517,-0.000018,0.00000548,-3.287006182,0.001128846,loss,ns,-0.0000246,0.00000931,-2.641992202,0.008660196,neg,ns,0.002030828,0.002726795,0.744767404,0.45697657,pos,ns,0.340106066,-0.000108138,0.0000938,-1.153174329,0.249727208,neg,ns,0.754053609,Setd2,Setd2_threeUTR,9,110577151,110577200,110577199,110577200,50,+,ATCACCAGCTGACCATGTGTCTCCTTTTCTCAACTCCATTTCCAACTTCG,3' UTR,9,110532597,110618633,86037,1,Setd2-201,44554,Setd2-201;Setd2-203;Setd2-210;Setd2-206,Setd2;Setd2;Setd2;Setd2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,3,235626,ENSMUSG00000044791,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14693,cg12458210,-0.00000249,0.00000236,-1.056281539,0.291662074,loss,ns,0.0000106,0.000004,2.641256769,0.008678595,pos,ns,0.002996403,0.001172484,2.555603012,0.011077382,pos,ns,1.955562865,-0.0000917,0.0000403,-2.273628212,0.023671978,neg,ns,0.946698247,2210408I21Rik,2210408I21Rik_Exon,13,77263597,77263646,77263597,77263598,50,-,CGAACTACTGCGTCAGAGTTTGTGCTACAAGCATTTTACAGGATGCTGAG,"Exon (2210408I21Rik-201/2210408I21Rik, exon 9 of 20)",13,77135540,77613784,478245,1,2210408I21Rik-201,128057,2210408I21Rik-201;2210408I21Rik-203,2210408I21Rik;2210408I21Rik,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,20,72371,ENSMUSG00000071252,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26273,cg23732608,0.0000327,0.0000106,3.075446218,0.002289076,gain,ns,0.0000477,0.0000181,2.641230456,0.008679254,pos,ns,0.019574474,0.005296211,3.695939602,0.00025896,pos,ns,3.58676706,-0.000437518,0.000182136,-2.402148379,0.016887094,neg,ns,0.65341666,Cfap61,Cfap61_Exon,2,146045470,146045519,146045470,146045471,50,+,CGACCACGACGACAGATTGTCTATCCTCTGGAAAAGCTTGGCATAAACGC,"Exon (Cfap61-206/Cfap61, exon 17 of 27)",2,145934814,146215039,280226,1,Cfap61-206,110656,Cfap61-204;Cfap61-206;Cfap61-213;Cfap61-211;Cfap61-203;Cfap61-209,Cfap61;Cfap61;Cfap61;Cfap61;Cfap61;Cfap61,0;0;0;0;0;-1732,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,13,78774,ENSMUSG00000037143,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14620,cg01382846,0.0000017,0.00000292,0.581102663,0.561593507,gain,ns,0.0000131,0.00000496,2.640837187,0.008689109,pos,ns,0.0000234,0.001452069,0.016124045,0.987145803,pos,ns,0.005618696,-0.00000703,0.0000499,-0.140785508,0.888130828,neg,ns,0.907214211,Zfp647,Zfp647_Exon,15,76911028,76911077,76911028,76911029,50,-,CGTGTGGGTCCTCAGGTGCACAATCAGAGTTGCTTTCAGGCTGAAGGCTT,"Exon (Zfp647-202/Zfp647, exon 5 of 5)",15,76910371,76925448,15078,2,Zfp647-202,14371,Rpl8-201;Rpl8-202;Zfp647-202;Zfp647-201;Zfp647-203,Rpl8;Rpl8;Zfp647;Zfp647;Zfp647,6950;6926;0;0;14335,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,239546,ENSMUSG00000054967,conserved gene and region,15,76910892,76911049,158,*,158,11,0.601265823,0.770390071,0.069620253,0.000000471,CpGisland,TRUE,U10,Tr-S
1740,cg07228583,-0.0000326,0.0000119,-2.750105369,0.006307531,loss,ns,0.0000532,0.0000202,2.640551402,0.008696276,pos,ns,0.007471988,0.005906722,1.264997449,0.206822324,pos,ns,0.684402585,-0.0000745,0.000203132,-0.366766078,0.714043727,neg,ns,0.680159175,Gm5513,Gm5513_Intergenic_downstream,19,14940561,14940610,14940561,14940562,50,-,CGGCAAGGGCCTGTGTTTAAACACGGGGCTGAGTTATTATCCCAGTAGGC,Distal Intergenic,19,14959549,14960766,1218,2,Gm5513-201,20205,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,22,433225,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1179,cg23582482,-0.00000203,0.00000553,-0.366468176,0.714265746,loss,ns,0.0000248,0.00000939,2.639261801,0.008728684,pos,ns,0.01001126,0.002750605,3.639657707,0.000319743,pos,ns,3.495199578,-0.000214559,0.0000946,-2.268228205,0.024002929,neg,ns,0.588908898,Gm14512,Gm14512_Intergenic_downstream,X,11998224,11998273,11998272,11998273,50,+,ACATTATGTTTTCGTGGGCCAACCCATAACTCATTAGTGTTGAACTCACG,Distal Intergenic,20,11984468,11984697,230,1,Gm14512-201,13756,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,22,22,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1301,cg00324991,0.0000293,0.00000476,6.156346281,2.30E-09,gain,yes,-0.0000213,0.00000809,-2.638686383,0.00874318,neg,ns,0.003681585,0.002369727,1.55359007,0.121302516,pos,ns,0.916130191,-0.000109721,0.0000815,-1.346351795,0.179172698,neg,ns,0.082370688,Fezf2,Fezf2_Intergenic_downstream,14,12338266,12338315,12338314,12338315,50,-,GCTCCGTTGGCAATTAACATGTTTCTAGGAGCAAACTGGTTGCTCAGACG,Distal Intergenic,14,12342094,12345844,3751,2,Fezf2-203,7578,Fezf2-203;Fezf2-201,Fezf2;Fezf2,0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,21,45,54713,ENSMUSG00000021743,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
10271,cg18141729,0.0000344,0.0000102,3.367581922,0.000853925,gain,ns,0.0000458,0.0000174,2.63806831,0.008758774,pos,ns,0.008756621,0.005089164,1.720640276,0.08631396,pos,ns,1.063918956,0.0000402,0.000175016,0.229594677,0.818558156,pos,ns,0.149519554,Evx1,Evx1_Intergenic_downstream,6,52321761,52321810,52321761,52321762,50,-,CGCGGGTCACAGATTGAATCAATTGTCCAATCTTGTGAAAGTCATATCCT,Distal Intergenic,6,52313552,52316644,3093,1,Evx1-202,8258,Evx1-201,Evx1,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,19,14028,ENSMUSG00000005503,mapped to different genes,6,52321755,52321764,10,*,10,4,0.8,2.5,0.4,0.00000556,CpGisland,TRUE,U13,Hc-P
7542,cg27454350,-0.0000151,0.00000716,-2.106565112,0.035958705,loss,ns,0.0000321,0.0000122,2.637693128,0.008768252,pos,ns,0.009271394,0.003564169,2.60127811,0.009733198,pos,ns,2.011744459,-0.000268072,0.000122571,-2.187066576,0.029484614,neg,ns,0.876596023,Zbtb20,Zbtb20_Intron,16,43098304,43098353,43098352,43098353,50,-,TAATCAGGTTAATTATGCAAAGTGCTAATCAGTTCTTCTTGAAGCACACG,"Intron (Zbtb20-209/Zbtb20, intron 3 of 7)",16,42875881,43463175,587295,1,Zbtb20-209,222423,Zbtb20-209;Zbtb20-211;Zbtb20-217;Zbtb20-218;Zbtb20-204,Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,98,56490,ENSMUSG00000022708,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20060,cg10471976,0.000102996,0.00000531,19.38185668,2.24E-55,gain,yes,-0.0000238,0.00000903,-2.637623595,0.008770009,neg,ns,0.002517246,0.002644859,0.951750726,0.341964878,pos,ns,0.466018496,0.00000594,0.000091,0.065309391,0.947969761,pos,ns,0.189543916,Rundc3a,Rundc3a_fiveUTR,11,102393665,102393714,102393665,102393666,50,-,CGCACATCTGGATGGAAGCGAGCTTTGTCCAGACCACCATGGCTCTGGGG,Promoter (<=1kb),11,102393403,102401754,8352,1,Rundc3a-202,262,Rundc3a-202;Rundc3a-203;Rundc3a-204;Rundc3a-201;Rundc3a-209;Rundc3a-205,Rundc3a;Rundc3a;Rundc3a;Rundc3a;Rundc3a;Rundc3a,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,6,51799,ENSMUSG00000006575,mapped to different genes,11,102393275,102393684,410,*,410,39,0.719512195,0.74943757,0.095121951,4.98E-29,CpGisland,TRUE,U3,Pr-B
21485,cg11474318,0.0000127,0.00000971,1.304283933,0.193104336,gain,ns,0.0000435,0.0000165,2.637529771,0.008772381,pos,ns,0.012242375,0.00483218,2.533509797,0.011785182,pos,ns,1.928663697,-0.0000911,0.000166178,-0.548020208,0.584072416,neg,ns,0.575338285,Camkv,Camkv_threeUTR,9,107946100,107946149,107946148,107946149,50,-,TGACTGGATCCTGGACCAGGGCTACTACTCGGAGCGAGACACAAGCAACG,3' UTR,9,107935674,107949691,14018,1,Camkv-201,10426,Camkv-201;Camkv-202;Camkv-203;Camkv-205;Camkv-204;Traip-206;Traip-201;Traip-202;Traip-205,Camkv;Camkv;Camkv;Camkv;Camkv;Traip;Traip;Traip;Traip,0;0;0;0;0;-3987;-4807;-4818;-4839,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,3,235604,ENSMUSG00000032936,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
373,cg16140493,-0.00000459,0.00000313,-1.466666503,0.143480485,loss,ns,0.000014,0.00000532,2.637268252,0.008778996,pos,ns,0.00309993,0.001557677,1.990098481,0.047458165,pos,ns,1.323689059,-0.0000321,0.0000536,-0.598776741,0.549759055,neg,ns,0.927082072,Kremen1,Kremen1_Intron,11,5255853,5255902,5255853,5255854,50,-,CGAGGTGCAGATGGCAGCAGTTACAGCCCTCACCAGATGCTACAGTCTCT,"Intron (Kremen1-201/Kremen1, intron 1 of 8)",11,5191552,5261558,70007,2,Kremen1-201,5656,Kremen1-201,Kremen1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,84035,ENSMUSG00000020393,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10227,cg24446586,0.000177355,0.0000097,18.29083274,3.33E-51,gain,yes,-0.0000434,0.0000165,-2.637178289,0.008781273,neg,ns,0.003990564,0.004825986,0.826890906,0.408934912,pos,ns,0.388345811,0.000426436,0.000165965,2.569432127,0.010653889,pos,ns,0.252862986,Hoxa11,Hoxa11_Exon,6,52245987,52246036,52246035,52246036,50,+,ACCTCAGGGGAAGCAACAGATCGTCACTCGGTGTTCTCACCGAAAGCACG,Promoter (<=1kb),6,52242106,52245810,3705,2,Hoxa11-201,-177,Hoxa11-201;Hoxa11-202,Hoxa11;Hoxa11,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,15,18,15396,ENSMUSG00000038210,mapped to different genes,6,52246008,52246200,193,*,193,16,0.658031088,0.771614193,0.082901554,3.24E-11,CpGisland,TRUE,U13,Hc-P
901,cg12986671,-0.0000225,0.00000577,-3.902141756,0.000116983,loss,ns,0.0000259,0.00000981,2.637151689,0.008781946,pos,ns,-0.007435973,0.002873556,-2.587724736,0.010115953,neg,ns,1.994993177,0.000197698,0.0000988,2.000561847,0.04631143,pos,ns,0.824222544,Grin2a,Grin2a_Exon,16,9585084,9585133,9585084,9585085,50,-,CGCAGCTTCCAGTAGAAGAGGTGCTCCCAGATGAAGGTGATGAGGCTAAG,"Exon (Grin2a-206/Grin2a, exon 13 of 14)",16,9567898,9994923,427026,2,Grin2a-206,409790,Grin2a-206;Grin2a-202;Grin2a-201,Grin2a;Grin2a;Grin2a,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,14811,ENSMUSG00000059003,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5176,cg17063148,0.0000344,0.00000447,7.695707893,1.89E-13,gain,yes,-0.00002,0.00000759,-2.637141201,0.008782212,neg,ns,0.004025545,0.002224604,1.809556331,0.071333057,pos,ns,1.146709162,-0.0000498,0.0000765,-0.650624262,0.515770985,neg,ns,0.110354997,Prrxl1,Prrxl1_Promoter,14,32599310,32599359,32599310,32599311,50,+,CGCTGTAGACAGCGCTGGAAATAATCAGATTAAGGCCAATTATGCGTGAG,Promoter (<=1kb),14,32599407,32649204,49798,1,Prrxl1-203,-48,Prrxl1-203;Prrxl1-204;Prrxl1-202;Prrxl1-201;Prrxl1-205,Prrxl1;Prrxl1;Prrxl1;Prrxl1;Prrxl1,0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,14,23,107751,ENSMUSG00000041730,conserved gene and region,14,32599310,32599392,83,*,83,9,0.530120482,1.667410714,0.108433735,0.00000018,CpGisland,TRUE,U13,Hc-P
13154,cg08153570,0.000000957,0.00000558,0.171426593,0.86400019,gain,ns,0.000025,0.00000948,2.636654853,0.008794529,pos,ns,0.008414705,0.002778298,3.028727079,0.002662315,pos,ns,2.574740522,-0.000357438,0.0000955,-3.741023152,0.000218308,neg,ns,0.873140243,Tcf4,Tcf4_Intron,18,69577889,69577938,69577937,69577938,50,-,TACTGTGTTTAATGTTTGTCAAAATCTCCAGCCTGGTTTGATGGATGTCG,"Intron (Tcf4-201/Tcf4, intron 9 of 20)",18,69344146,69684343,340198,1,Tcf4-201,233743,Tcf4-201;Tcf4-207;Tcf4-240;Tcf4-254;Tcf4-246;Tcf4-206;Tcf4-202;Tcf4-257;Tcf4-232;Tcf4-248;Tcf4-231;Tcf4-205;Tcf4-253;Tcf4-238;Tcf4-249;Tcf4-219;Tcf4-227;Tcf4-250;Tcf4-229;Tcf4-260;Tcf4-226;Tcf4-216;Tcf4-256;Tcf4-230;Tcf4-221;Tcf4-234;Tcf4-258;Tcf4-217;Tcf4-247;Tcf4-252;Tcf4-218;Tcf4-243;Tcf4-237;Tcf4-239;Tcf4-262;Tcf4-223;Tcf4-212,Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,42,66,21413,ENSMUSG00000053477,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2961,cg05067709,-0.0000194,0.0000113,-1.716871593,0.087001469,loss,ns,0.0000505,0.0000192,2.636493152,0.008798628,pos,ns,0.008219401,0.005616035,1.463559598,0.144327531,pos,ns,0.840650817,-0.000326849,0.000193135,-1.692333077,0.091587253,neg,ns,0.773644893,Lrmda,Lrmda_Intron,14,22176238,22176287,22176286,22176287,50,+,TCAGCCAAAGTGGTTTCTTTTTAGCTGAGCAGCAAGCTAGAAAGCAACCG,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,156526,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206,Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16125,cg27222818,-0.0000225,0.0000118,-1.905579877,0.057629655,loss,ns,0.0000528,0.00002,2.635699028,0.008818783,pos,ns,0.001676978,0.005868944,0.28573761,0.77526993,pos,ns,0.11054706,0.0000362,0.000201832,0.17925474,0.857854786,pos,ns,0.810012097,Pcdh17,Pcdh17_Exon,14,84477337,84477386,84477337,84477338,50,-,CGCAGAGCCCAATTACATGGGCAGCAGGCAGCAGTTTGTTCAAAGGTAAG,"Exon (Pcdh17-201/Pcdh17, exon 2 of 4)",14,84443563,84539002,95440,1,Pcdh17-201,33774,Pcdh17-201;Pcdh17-202,Pcdh17;Pcdh17,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,13,219228,ENSMUSG00000035566,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10257,cg05825073,0.0000675,0.00000492,13.72808596,7.82E-34,gain,yes,-0.000022,0.00000836,-2.635442061,0.008825313,neg,ns,0.004773013,0.002448145,1.949644951,0.052119843,pos,ns,1.282996899,0.0000825,0.0000842,0.979560553,0.328066915,pos,ns,0.06953796,Evx1,Evx1_fiveUTR,6,52313452,52313501,52313452,52313453,50,+,CGAGGCCCACACCTGGCGCATCACTGCCGAGCCATTAGCTGCGGGTTTCC,Promoter (<=1kb),6,52313498,52318378,4881,1,Evx1-201,0,Evx1-201;Evx1-202,Evx1;Evx1,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,7,19,14028,ENSMUSG00000005503,mapped to different genes,6,52313448,52313581,134,*,134,12,0.574626866,1.093877551,0.089552239,6.76E-09,CpGisland,TRUE,U13,Hc-P
24767,cg22543640,-0.0000218,0.0000044,-4.956645427,0.00000118,loss,yes,-0.0000197,0.00000748,-2.635215976,0.008831062,neg,ns,-0.002042386,0.002190732,-0.932284735,0.351914906,neg,ns,0.453562338,-0.000142602,0.0000753,-1.892795752,0.059316389,neg,ns,0.894373284,Ankrd52,Ankrd52_Exon,10,128389106,128389155,128389154,128389155,50,-,ACCACAGAGATGCTACTGGGAGCTCTGGGTGCCAAGATTGTGAACAGCCG,"Exon (Ankrd52-201/Ankrd52, exon 23 of 28)",10,128377119,128394006,16888,1,Ankrd52-201,11987,Ankrd52-203;Ankrd52-201;Ankrd52-202,Ankrd52;Ankrd52;Ankrd52,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,12,237615,ENSMUSG00000014498,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3367,cg23610653,0.00000646,0.0000142,0.456036108,0.648683317,gain,ns,0.0000634,0.0000241,2.634866487,0.008839957,pos,ns,0.006690159,0.007052237,0.948657587,0.343533734,pos,ns,0.46403061,0.000192003,0.000242526,0.791680866,0.429152122,pos,ns,0.848375077,Sst,Sst_Exon,16,23889730,23889779,23889778,23889779,50,-,TAACAGGATGTGAAAGTCTTCCAGAAGAAATTCTTGCAGCCAGCTTTGCG,"Exon (Sst-201/Sst, exon 2 of 2)",16,23889573,23890958,1386,2,Sst-201,1179,Sst-201,Sst,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,20604,ENSMUSG00000004366,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9923,cg21112359,-0.00000325,0.00000275,-1.182279276,0.238000944,loss,ns,-0.0000123,0.00000467,-2.634614137,0.008846384,neg,ns,-0.00085842,0.001368235,-0.627391859,0.530864232,neg,ns,0.275016535,0.000017,0.0000471,0.36166421,0.717849359,pos,ns,0.929091173,Snx10,Snx10_Intergenic_downstream,6,51593910,51593959,51593910,51593911,50,+,CGTGATGTAAGGAATTTGGAACTCATTAATTTGGGCTCTGACAGATTTCA,Distal Intergenic,6,51544566,51589043,44478,1,Snx10-205,49344,Snx10-201;Snx10-207;Snx10-202;Snx10-205,Snx10;Snx10;Snx10;Snx10,0;0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,10,71982,ENSMUSG00000038301,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17722,cg04958799,0.0000454,0.00000698,6.503572847,3.14E-10,gain,yes,-0.0000312,0.0000119,-2.634048758,0.008860798,neg,ns,-0.007948163,0.003474889,-2.287313921,0.022850982,neg,ns,1.641095139,0.0000619,0.000119501,0.517650335,0.605071449,pos,ns,0.778380528,Lrp4,Lrp4_Exon,2,91485732,91485781,91485780,91485781,50,+,ACCCCTTTCGGCCTTTGATCAGGTCTTGACAAGTTCCTGCTTTTTGCCCG,"Exon (Lrp4-201/Lrp4, exon 17 of 38)",2,91457511,91513779,56269,1,Lrp4-201,28221,Lrp4-201;Lrp4-202,Lrp4;Lrp4,0;9476,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,7,228357,ENSMUSG00000027253,conserved gene and region,2,91485740,91485897,158,*,158,11,0.588607595,0.803885291,0.069620253,0.000000471,CpGisland,TRUE,NA,NRS
3460,cg10873006,-0.0000277,0.0000102,-2.720092458,0.006894594,loss,ns,0.0000455,0.0000173,2.63380343,0.00886706,pos,ns,-0.001060304,0.005059455,-0.209568745,0.834141931,neg,ns,0.078760047,-0.0000583,0.000173994,-0.335104212,0.737773118,neg,ns,0.78825488,Gm11892,Gm11892_Intergenic_upstream,4,24151566,24151615,24151566,24151567,50,-,CGGTGGTGGTGGTGACTGGCTCACAGTAATTTTCCTACAAAGTAGTTTAA,Distal Intergenic,4,24238100,24239301,1202,1,Gm11892-201,-86534,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,16,16,664973,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20298,cg01510925,0.000100526,0.00000772,13.02248653,3.21E-31,gain,yes,-0.0000345,0.0000131,-2.63349585,0.008874915,neg,ns,0.009074849,0.003842035,2.361990498,0.018794956,pos,ns,1.725958692,-0.000154887,0.000132127,-1.172255751,0.241994465,neg,ns,0.266762625,Hoxc5,Hoxc5_Exon,15,102991082,102991131,102991130,102991131,50,-,GGCTCAGCAAGAGGCGAGCGTGGTGCAATATCCCGACTGTAAATCCTCCG,"Exon (Hoxc8-201/Hoxc8, exon 1 of 2)",15,102967443,103015676,48234,1,Hoxc5-202,23639,Hoxc5-202;Hoxc8-201;Hoxc8-202,Hoxc5;Hoxc8;Hoxc8,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,72,134,15424,ENSMUSG00000022485,conserved gene and region,15,102990435,102991303,869,*,869,73,0.63406214,0.844205792,0.084004603,1.12E-49,CpGisland,TRUE,U13,Hc-P
21676,cg17310709,0.0000518,0.0000085,6.094898635,3.25E-09,gain,yes,-0.000038,0.0000144,-2.633465406,0.008875693,neg,ns,-0.012876226,0.004230627,-3.043573536,0.002538048,neg,ns,2.595500172,0.000549239,0.000145491,3.775075142,0.000191678,pos,ns,0.900513585,Zfhx3,Zfhx3_Intron,8,108823013,108823062,108823013,108823014,50,-,CGTGGATTGACTCTATAAATTGTCAGCCTGTTGACATTTTAATGCGAATT,"Intron (Zfhx3-204/Zfhx3, intron 9 of 15)",8,107942644,108961630,1018987,1,Zfhx3-204,880369,Zfhx3-204;Zfhx3-201,Zfhx3;Zfhx3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,114,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
13868,cg13472501,-0.00000217,0.00000206,-1.054701493,0.292383179,loss,ns,0.0000092,0.00000349,2.633215311,0.008882086,pos,ns,0.003142521,0.001023708,3.069745363,0.002331888,pos,ns,2.632292331,-0.0000845,0.0000352,-2.400136033,0.01697847,neg,ns,0.961245262,Ola1,Ola1_Intron,2,73140415,73140464,73140415,73140416,50,+,CGACAGCTAAATCACAGACTGGCGTCTCCTAAGCAGTCTGTCTACCATTA,"Intron (Ola1-201/Ola1, intron 7 of 10)",2,73092801,73214447,121647,2,Ola1-201,73983,Ola1-201;Ola1-206;Ola1-203;Ola1-202,Ola1;Ola1;Ola1;Ola1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,19,67059,ENSMUSG00000027108,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7291,cg20950386,0.0000857,0.000014,6.12296524,2.78E-09,gain,yes,0.0000626,0.0000238,2.632997569,0.008887655,pos,ns,0.03200382,0.006962865,4.596357762,0.00000627,pos,ns,5.202965378,-0.000800001,0.000239452,-3.340961221,0.000936973,neg,ns,0.348008314,Stag2,Stag2_fiveUTR,X,42149696,42149745,42149744,42149745,50,-,AAATGGCGGAGGCGAAGCTTCTAGAAGTTTGGAGGGGCACCCGGAGGGCG,Promoter (<=1kb),20,42149317,42277185,127869,1,Stag2-203,379,Stag2-203;Stag2-202;Stag2-207;Stag2-205;Stag2-208;Stag2-201;Stag2-204;Stag2-206,Stag2;Stag2;Stag2;Stag2;Stag2;Stag2;Stag2;Stag2,0;0;0;0;0;0;0;-2435,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,7,20843,ENSMUSG00000025862,mapped to different genes,X,42149672,42150272,601,*,601,67,0.713810316,0.875559904,0.111480865,1.83E-54,CpGisland,TRUE,U1,Pr-A
13764,cg09336476,0.000000357,0.00000311,0.11489059,0.908606223,gain,ns,-0.0000139,0.00000528,-2.632996227,0.008887689,neg,ns,-0.001142329,0.001547525,-0.738165638,0.460972234,neg,ns,0.336325233,0.0000395,0.0000532,0.742846839,0.458136955,pos,ns,0.924306565,Map3k20,Map3k20_Intron,2,72427008,72427057,72427056,72427057,50,+,GCAGTGTCATGGAAGCAGCTGCACATCTCAAAGACAATATAATGCCTGCG,"Intron (Map3k20-201/Map3k20, intron 16 of 19)",2,72285637,72442610,156974,1,Map3k20-201,141371,Map3k20-201,Map3k20,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,14,18,65964,ENSMUSG00000004085,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6574,cg00618420,0.000054,0.00000532,10.13830686,4.76E-21,gain,yes,-0.0000238,0.00000904,-2.631051685,0.008937563,neg,ns,0.004178069,0.002649378,1.576999877,0.115815439,pos,ns,0.936233543,0.0000133,0.0000911,0.14639164,0.883707377,pos,ns,0.123164044,Zfp536,Zfp536_Exon,7,37772998,37773047,37773046,37773047,50,-,TATCTGGTAGGTGAAATGCATTGTACCATTAAAAACGCTCTCCATTGTCG,Promoter (<=1kb),7,37569629,37773641,204013,2,Zfp536-208,594,Zfp536-202;Zfp536-201;Zfp536-203;Zfp536-206;Zfp536-209;Zfp536-208;Zfp536-205;Zfp536-207;Zfp536-210,Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536,0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,13,112,243937,ENSMUSG00000043456,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
5825,cg08580778,0.0000185,0.00000301,6.150260999,2.38E-09,gain,yes,-0.0000135,0.00000511,-2.631037709,0.008937922,neg,ns,-0.000335546,0.001498071,-0.223985467,0.822916155,neg,ns,0.084644412,-0.0000163,0.0000515,-0.315986075,0.752225719,neg,ns,0.926896977,Prpf4b,Prpf4b_threeUTR,13,34903216,34903265,34903216,34903217,50,+,CGACGCCTTCTCCAAGGGGTCTGATTTGCTGAGACACCAGCTTCACCTTC,3' UTR,13,34875302,34906064,30763,1,Prpf4b-201,27914,Prpf4b-201;Prpf4b-208;Prpf4b-202;Prpf4b-203;Prpf4b-210;Prpf4b-207;Prpf4b-204;Prpf4b-205;Prpf4b-209,Prpf4b;Prpf4b;Prpf4b;Prpf4b;Prpf4b;Prpf4b;Prpf4b;Prpf4b;Prpf4b,0;0;0;11092;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,4,19134,ENSMUSG00000021413,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15842,cg19907930,0.0000572,0.0000116,4.946666205,0.00000124,gain,yes,-0.0000517,0.0000196,-2.630796348,0.008944131,neg,ns,-0.011760284,0.005753457,-2.04403796,0.041794543,neg,ns,1.378880416,0.000138188,0.000197861,0.69840938,0.48544479,pos,ns,0.742145754,Ccdc171,Ccdc171_Intron,4,83656623,83656672,83656623,83656624,50,-,CGAATTGTTATTTGGGAGGATGAATGTCACATGATCCTCAGCACAGTTGA,"Intron (Ccdc171-201/Ccdc171, intron 12 of 25)",4,83525545,83864670,339126,1,Ccdc171-201,131078,Ccdc171-201;Ccdc171-206;Ccdc171-203,Ccdc171;Ccdc171;Ccdc171,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,9,320226,ENSMUSG00000052407,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10221,cg00608008,0.0000479,0.00000453,10.56633912,1.72E-22,gain,yes,-0.0000203,0.0000077,-2.630700853,0.008946588,neg,ns,0.005772423,0.002255879,2.558835517,0.010977068,pos,ns,1.959513636,-0.0000307,0.0000776,-0.39515098,0.693003229,neg,ns,0.124457935,Hoxa11,Hoxa11_fiveUTR,6,52245795,52245844,52245795,52245796,50,-,CGTGAAGTAGAAATTTGGAGACGTAAGCTGACGTGGAAATCTATCCCCAT,Promoter (<=1kb),6,52242106,52245810,3705,2,Hoxa11-201,0,Hoxa10-201;Hoxa10-204;Hoxa11-201;Hoxa11-202,Hoxa10;Hoxa10;Hoxa11;Hoxa11,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,18,15396,ENSMUSG00000038210,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
1763,cg13740303,0.00000198,0.00000322,0.614579791,0.539283073,gain,ns,-0.0000144,0.00000547,-2.630557273,0.008950284,neg,ns,-0.005546444,0.001602922,-3.460208427,0.000615422,neg,ns,3.210826707,0.0000635,0.0000551,1.151275751,0.250505991,pos,ns,0.915627737,Hephl1,Hephl1_Exon,9,15074081,15074130,15074081,15074082,50,+,CGTCCACGTGCTGCTTTTCGAACTCCCAGTTTTTGTTAGGGGCATAATCC,"Exon (Hephl1-201/Hephl1, exon 12 of 20)",9,15051841,15112108,60268,2,Hephl1-201,37978,Hephl1-201,Hephl1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,244698,ENSMUSG00000031936,conserved gene and region,9,15073987,15074100,114,*,114,9,0.605263158,0.876923077,0.078947368,0.00000276,CpGisland,TRUE,U15,NS
24134,cg14489470,-0.00000916,0.00000395,-2.31631548,0.021192944,loss,ns,-0.0000177,0.00000672,-2.630216954,0.008959049,neg,ns,-0.002293156,0.001968233,-1.165083771,0.244880814,neg,ns,0.61104524,-0.0000491,0.0000677,-0.725378168,0.468767276,neg,ns,0.891635975,Kdm2b,Kdm2b_Exon,5,122880219,122880268,122880267,122880268,50,-,GGTGGCTGAGGTAGCTGAAGACGGCCATCCACACCTCCCTGTGCATGACG,"Exon (Kdm2b-202/Kdm2b, exon 19 of 23)",5,122870665,122989099,118435,2,Kdm2b-202,108831,Kdm2b-202;Kdm2b-201;Kdm2b-204;Kdm2b-203;Kdm2b-207;Kdm2b-205;Kdm2b-212;Kdm2b-217;Kdm2b-209;Kdm2b-219;Kdm2b-208;Kdm2b-220,Kdm2b;Kdm2b;Kdm2b;Kdm2b;Kdm2b;Kdm2b;Kdm2b;Kdm2b;Kdm2b;Kdm2b;Kdm2b;Kdm2b,0;0;0;0;0;0;0;0;0;37456;41839;41280,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,6,30841,ENSMUSG00000029475,conserved gene and region,5,122880267,122880575,309,*,309,22,0.666666667,0.663348946,0.071197411,7.85E-14,CpGisland,TRUE,U10,Tr-S
21399,cg06942108,0.0000704,0.0000104,6.788247018,5.78E-11,gain,yes,-0.0000463,0.0000176,-2.630165526,0.008960374,neg,ns,0.014402098,0.005158156,2.792102231,0.005561875,pos,ns,2.254778813,-0.000304543,0.000177389,-1.716815594,0.087011718,neg,ns,0.712361635,Glis1,Glis1_Intron,4,107629345,107629394,107629345,107629346,50,-,CGTTTAAATAGCTTGACAGAATTATCTGATTCACTCAAAAATATGCTAAG,"Intron (Glis1-201/Glis1, intron 8 of 10)",4,107434719,107635061,200343,1,Glis1-201,194626,Glis1-201;Glis1-202;Glis1-206;Glis1-203,Glis1;Glis1;Glis1;Glis1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,11,230587,ENSMUSG00000034762,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12684,cg17760217,0.0000178,0.00000951,1.868072777,0.062695184,gain,ns,0.0000425,0.0000162,2.630037879,0.008963665,pos,ns,0.010832466,0.004733877,2.28828646,0.022793597,pos,ns,1.642187131,-0.000159065,0.000162798,-0.97706904,0.329296822,neg,ns,0.692445491,Unc80,Unc80_Exon,1,66606558,66606607,66606558,66606559,50,-,CGGCAGCTTAAAGAGCAGCAAGTTATCACGGCAGGACTCAGAGTCTGAGG,"Exon (Unc80-201/Unc80, exon 27 of 65)",1,66468367,66699148,230782,1,Unc80-201,138191,Unc80-201;Unc80-206,Unc80;Unc80,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,9,329178,ENSMUSG00000055567,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13278,cg00885424,0.0000536,0.0000103,5.186206998,0.000000388,gain,yes,-0.0000462,0.0000176,-2.629391791,0.008980335,neg,ns,0.006443294,0.005148671,1.251448117,0.211714559,pos,ns,0.674249277,-0.000398196,0.000177062,-2.248903434,0.025220539,neg,ns,0.753752963,Pebp4,Pebp4_Intron,14,69991919,69991968,69991967,69991968,50,+,GTTTCATTTAACATGCAAGGGCTAATAACTTGTCACAATTCAATAAGGCG,"Intron (Pebp4-201/Pebp4, intron 4 of 6)",14,69840420,70059918,219499,1,Pebp4-201,151499,Pebp4-201,Pebp4,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,14,14,73523,ENSMUSG00000022085,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
11399,cg06490492,-0.0000364,0.0000652,-0.558291451,0.577048375,loss,ns,0.000291121,0.000110727,2.629171306,0.00898603,pos,ns,-0.009794716,0.032439342,-0.30193941,0.762900715,neg,ns,0.117531978,0.003021985,0.001115586,2.708876064,0.007126356,pos,ns,0.760067974,Zic3,Zic3_Intergenic_upstream,X,57969786,57969835,57969834,57969835,50,-,TGTTTCCCTCAGATTTAATGCCTTATTGGCAGCAGGTCTCCCTACAGGCG,Distal Intergenic,20,58022700,58031448,8749,1,Zic3-204,-52914,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,17,22773,ENSMUSG00000067860,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25527,cg12966966,-0.00000499,0.00000649,-0.769152082,0.44238865,loss,ns,0.000029,0.000011,2.628809382,0.008995385,pos,ns,-0.0001568,0.003227872,-0.0485769,0.961287761,neg,ns,0.017146587,-0.0000392,0.000111006,-0.352879167,0.724418846,neg,ns,0.869314746,Gm45499,Gm45499_Intergenic_downstream,7,137172887,137172936,137172887,137172888,50,-,CGCCCAGTGCCATTAAGAATGGAGGAGAAAAGTTCAGCCCAGGATAAGAA,Distal Intergenic,7,137167820,137168099,280,1,Gm45499-201,5116,Gm45499-201,Gm45499,5067,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,4,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5346,cg21403558,0.0000527,0.00000913,5.776006617,1.86E-08,gain,yes,0.0000408,0.0000155,2.6280611,0.009014756,pos,ns,0.003695524,0.004544304,0.813221148,0.41671541,pos,ns,0.380160439,0.0000374,0.000156278,0.239453181,0.810912437,pos,ns,0.738218015,Fam53a,Fam53a_Intergenic_downstream,5,33542346,33542395,33542394,33542395,50,+,TTGGCCTATCTGACTCTGTACTTTTTATGCCGCTCATCTGCTCATTACCG,Distal Intergenic,5,33600356,33628912,28557,2,Fam53a-203,86517,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,13,13,74504,ENSMUSG00000037339,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4146,cg13780795,0.0000398,0.000004,9.954735953,1.94E-20,gain,yes,-0.0000179,0.0000068,-2.628038624,0.009015338,neg,ns,-0.0000633,0.00199159,-0.03180289,0.974649708,neg,ns,0.011151443,-0.0000157,0.0000685,-0.229098968,0.818943065,neg,ns,0.791221511,Syngap1,Syngap1_threeUTR,17,26966955,26967004,26967003,26967004,50,-,GAGGCTGCTCGACGCTCAGGTGGAAATTACAATGTCATTTATCTTCTCCG,3' UTR,17,26941253,26972434,31182,1,Syngap1-204,25702,Syngap1-204;Syngap1-213;Syngap1-208;Syngap1-202;Syngap1-207;Syngap1-203;Syngap1-201;Syngap1-212;Syngap1-214;Syngap1-206;Syngap1-209;Syngap1-210,Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,18,240057,ENSMUSG00000067629,conserved gene and region,17,26966844,26967077,234,*,234,16,0.641025641,0.701649175,0.068376068,6.16E-10,CpGisland,TRUE,U11,Tr-P
5312,cg20021133,-0.00000391,0.0000018,-2.175031353,0.030383342,loss,ns,0.00000802,0.00000305,2.627898498,0.00901897,pos,ns,0.002119261,0.000894456,2.369328858,0.018432783,pos,ns,1.734409092,-0.0000778,0.0000308,-2.529157795,0.011929267,neg,ns,0.954357673,Mapk8,Mapk8_threeUTR,14,33402625,33402674,33402625,33402626,50,+,CGATGAATAATTCCAGCAGAATGAAGGTGCTTGATTCCACACAGCATCTG,3' UTR,14,33377898,33447158,69261,2,Mapk8-205,44484,Mapk8-205;Mapk8-201;Mapk8-204;Mapk8-203;Mapk8-202;Mapk8-207;Mapk8-210;Mapk8-208,Mapk8;Mapk8;Mapk8;Mapk8;Mapk8;Mapk8;Mapk8;Mapk8,0;0;0;0;0;0;0;44483,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,26419,ENSMUSG00000021936,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15064,cg21685750,-0.00000695,0.00000159,-4.363336591,0.0000175,loss,ns,0.00000711,0.00000271,2.62773278,0.009023267,pos,ns,0.001683818,0.000793197,2.122823918,0.034560875,pos,ns,1.46141527,-0.0000439,0.0000273,-1.609102186,0.108611849,neg,ns,0.057429353,Strn,Strn_Exon,17,78736239,78736288,78736239,78736240,50,-,CGGGAGGGTCTTTACCTGCAGCTCCGCCCGCTCCACCTCCCACTGGGCTC,Promoter (<=1kb),17,78649913,78737196,87284,2,Strn-203,908,Strn-203,Strn,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,268980,ENSMUSG00000024077,conserved gene but different region,17,78736138,78736922,785,*,785,87,0.727388535,0.838181149,0.110828026,2.73E-70,CpGisland,TRUE,U1,Pr-A
23820,cg06111305,-0.00000768,0.0000019,-4.037137795,0.0000682,loss,ns,0.00000848,0.00000323,2.626444603,0.00905673,pos,ns,0.002352721,0.000946309,2.486207262,0.013437646,pos,ns,1.871676813,-0.0000614,0.0000325,-1.88782998,0.05998258,neg,ns,0.047077861,Rap2a,Rap2a_Exon,14,120478738,120478787,120478786,120478787,50,+,CAAAGTGGTGGTGCTGGGCTCGGGCGGGGTAGGCAAATCCGCCCTGACCG,Promoter (<=1kb),14,120478444,120507194,28751,1,Rap2a-201,294,Rap2a-201,Rap2a,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,76108,ENSMUSG00000051615,conserved gene and region,14,120477643,120478949,1307,*,1307,162,0.691660291,1.044140781,0.123947973,3.12E-139,CpGisland,TRUE,U1,Pr-A
22597,cg01952486,0.0000396,0.0000182,2.170305517,0.030742656,gain,ns,0.0000813,0.000031,2.625668477,0.009076945,pos,ns,0.013775258,0.009074993,1.517935908,0.130049682,pos,ns,0.885890704,-0.000180418,0.000312088,-0.578099217,0.563616833,neg,ns,0.656709634,Otop3,Otop3_Exon,11,115344380,115344429,115344428,115344429,50,+,TGAGTACTGCCTCATCTGCTGTGCTGTGCTGTTTGTCATGTGGAAGAACG,"Exon (Otop3-202/Otop3, exon 6 of 7)",11,115334731,115346927,12197,1,Otop3-202,9649,Hid1-201;Hid1-202;Hid1-206;Otop3-202;Otop3-201,Hid1;Hid1;Hid1;Otop3;Otop3,23290;23327;6574;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,69602,ENSMUSG00000018862,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24567,cg21635439,0.0000108,0.00000588,1.829491897,0.068286303,gain,ns,0.0000262,0.00001,2.625298947,0.009086584,pos,ns,-0.000488288,0.002928974,-0.16670967,0.867707181,neg,ns,0.061626808,0.000187457,0.000100727,1.861039815,0.063685064,pos,ns,0.716224045,Maz,Maz_Exon,7,127023595,127023644,127023643,127023644,50,-,GGGGTCTTGCAGTGCACGCTGCACAGCTTGCACAGGATGCGGTCAGCCCG,"Exon (Maz-203/Maz, exon 5 of 6)",7,127022130,127026526,4397,2,Maz-203,2882,Gm42742-201;Gm42742-203;Gm42742-204;Gm42742-202;Kif22-202;Kif22-201;Kif22-205;Maz-203;Maz-201;Maz-204;Maz-202;Maz-206;Maz-205;Prrt2-201;Prrt2-202;Prrt2-204;Prrt2-203;Prrt2-205;Prrt2-206;Prrt2-207,Gm42742;Gm42742;Gm42742;Gm42742;Kif22;Kif22;Kif22;Maz;Maz;Maz;Maz;Maz;Maz;Prrt2;Prrt2;Prrt2;Prrt2;Prrt2;Prrt2;Prrt2,0;0;0;0;5313;18827;4472;0;0;0;0;0;0;0;0;-3693;-4000;-2639;-2458;-3240,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,16,17,17188,ENSMUSG00000030678,conserved gene and region,7,127023537,127023683,147,*,147,10,0.700680272,0.560640732,0.068027211,0.00000233,CpGisland,TRUE,U12,Tr-I
13270,cg10155596,0.00000587,0.00000334,1.757513191,0.079817393,gain,ns,-0.0000149,0.00000567,-2.625017981,0.009093919,neg,ns,-0.001219943,0.001661698,-0.734154417,0.463409545,neg,ns,0.334035025,-0.0000272,0.0000571,-0.475431153,0.634814516,neg,ns,0.88923242,Ubr3,Ubr3_Intron,2,69971408,69971457,69971408,69971409,50,-,CGACGGCCTAAAGTTCTTCAAAGAGAGGTAGATGTGTATGATATTTTCAT,"Intron (Ubr3-201/Ubr3, intron 22 of 38)",2,69897246,70024013,126768,1,Ubr3-201,74162,Ubr3-201;Ubr3-202,Ubr3;Ubr3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,5,68795,ENSMUSG00000044308,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23319,cg15711932,0.0000115,0.0000206,0.557768738,0.577404868,gain,ns,0.0000917,0.0000349,2.6249021,0.009096945,pos,ns,0.01334223,0.010232541,1.303901888,0.193234423,pos,ns,0.713915505,0.000154294,0.000351896,0.43846383,0.661355483,pos,ns,0.667449927,Cdca7l,Cdca7l_Intron,12,117806197,117806246,117806197,117806198,50,+,CGTTGCACACGGTATCATTTGCTTGTCACTTAATGACTGACCAGCCTGCC,"Intron (Cdca7l-202/Cdca7l, intron 1 of 4)",12,117804289,117870047,65759,1,Cdca7l-202,1908,Cdca7l-202,Cdca7l,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,7,217946,ENSMUSG00000021175,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22975,cg00658751,-0.0000386,0.00000632,-6.103546418,3.10E-09,loss,yes,0.0000282,0.0000107,2.624581455,0.009105325,pos,ns,0.009098375,0.003147345,2.890809806,0.004113849,pos,ns,2.385751682,-0.000579513,0.000108237,-5.354111895,0.000000168,neg,yes,0.854247849,Srrm4,Srrm4_Intron,5,116516167,116516216,116516215,116516216,50,-,CCAATAACATAGCTTGTTAAATTTTAATCAAATAGAGTATTGTAAGCACG,"Intron (Srrm4-201/Srrm4, intron 1 of 12)",5,116439276,116591817,152542,2,Srrm4-201,75601,Srrm4-201,Srrm4,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,68955,ENSMUSG00000063919,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2867,cg13066404,-0.00000193,0.00000135,-1.43110692,0.153406877,loss,ns,0.00000601,0.00000229,2.624458185,0.009108549,pos,ns,0.000829309,0.000671308,1.235364118,0.217630422,pos,ns,0.662280395,-0.0000413,0.0000231,-1.786802876,0.074946378,neg,ns,0.96812094,Ccdc178,Ccdc178_Intron,18,21996259,21996308,21996307,21996308,50,-,TTTTAATTCTCAAATTGTTTCACTTCAATAACTCTTTTAAAGTTGTTGCG,"Intron (Ccdc178-204/Ccdc178, intron 21 of 23)",18,21810893,22171442,360550,2,Ccdc178-204,175134,Ccdc178-204;Ccdc178-201;Ccdc178-202,Ccdc178;Ccdc178;Ccdc178,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,19,21,70950,ENSMUSG00000024306,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16440,cg03518416,-0.0000138,0.00000416,-3.332873891,0.000963655,loss,ns,0.0000185,0.00000706,2.624371178,0.009110824,pos,ns,0.004583654,0.002067995,2.216472443,0.027384826,pos,ns,1.562490012,-0.000158305,0.0000711,-2.225940528,0.026736918,neg,ns,0.91710257,Dmd,Dmd_Intron,X,85003327,85003376,85003327,85003328,50,+,CGCTAATCATTAATGGGTTTTCATTTTGTAAATGACATTTGCAGAAGTTA,"Intron (Dmd-203/Dmd, intron 62 of 78)",20,82948903,85206141,2257239,1,Dmd-203,2054424,Dmd-203;Dmd-215;Dmd-210,Dmd;Dmd;Dmd,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,28,13405,ENSMUSG00000045103,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10680,cg07421911,0.0000731,0.00000774,9.43948551,9.32E-19,gain,yes,-0.0000345,0.0000131,-2.623986893,0.009120882,neg,ns,0.004201127,0.00385202,1.090629721,0.276282832,pos,ns,0.5586461,-0.000292125,0.000132471,-2.205205387,0.028173538,neg,ns,0.132808911,Zfp462,Zfp462_Intron,4,54949440,54949489,54949488,54949489,50,-,GTCTGCTTTGGTTCCAGTCCAGACTCCAAAACACAAAGCTCCTTCTCACG,"Intron (Zfp462-204/Zfp462, intron 1 of 2)",4,54945048,55008314,63267,1,Zfp462-204,4392,Zfp462-204;Zfp462-203,Zfp462;Zfp462,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,23,242466,ENSMUSG00000060206,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1023,cg20680098,-0.00000354,0.0000082,-0.431607694,0.666326579,loss,ns,0.0000366,0.0000139,2.623499077,0.009133664,pos,ns,-0.000334306,0.004083301,-0.081871447,0.934801775,neg,ns,0.029280472,0.000159298,0.000140424,1.134407105,0.257500245,pos,ns,0.902385683,Gm14473,Gm14473_Intergenic_upstream,X,10911727,10911776,10911727,10911728,50,+,CGCGGTGCTGTCTTTTTCAATTAATGCTTTTCACAGAAGTTCAGGTTTTA,Distal Intergenic,20,10865077,10865633,557,2,Gm14473-201,-46094,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,668982,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18874,cg03373557,-0.0000138,0.00000461,-2.996209768,0.002954243,loss,ns,0.0000205,0.00000782,2.623446612,0.009135039,pos,ns,0.003887779,0.002292191,1.696096887,0.090871451,pos,ns,1.041572539,-0.000156187,0.0000788,-1.981359963,0.048434163,neg,ns,0.923942098,Dach1,Dach1_threeUTR,14,97787105,97787154,97787153,97787154,50,-,GGTCCTACATGAAGATGAGTATGTTCTGTTCCAAGGGCTTGCATAGAGCG,3' UTR,14,97786853,98169543,382691,2,Dach1-201,382389,Dach1-201;Dach1-202,Dach1;Dach1,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,76,13134,ENSMUSG00000055639,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12906,cg18669384,0.0000809,0.0000132,6.136971622,2.57E-09,gain,yes,-0.0000587,0.0000224,-2.622863956,0.009150329,neg,ns,0.01477829,0.006558566,2.25328075,0.024940125,pos,ns,1.60310138,-0.000536841,0.000225549,-2.380156555,0.01790961,neg,ns,0.176452162,Arid5b,Arid5b_Intron,10,68208389,68208438,68208437,68208438,50,+,TGTTTACACTTTTTAAGTTACAAATCCACTTTCTGCTATTTCAACTCACG,"Intron (Arid5b-204/Arid5b, intron 3 of 9)",10,68092520,68278740,186221,2,Arid5b-204,70302,Arid5b-204;Arid5b-201;Arid5b-202,Arid5b;Arid5b;Arid5b,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,33,71371,ENSMUSG00000019947,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10267,cg11656502,0.000103869,0.00000656,15.82246469,9.53E-42,gain,yes,-0.0000292,0.0000112,-2.622662515,0.00915562,neg,ns,0.006840688,0.003267306,2.093678492,0.037100767,pos,ns,1.430617107,0.0000345,0.000112362,0.30737905,0.758761266,pos,ns,0.125465966,Evx1,Evx1_Exon,6,52314791,52314840,52314839,52314840,50,+,CGGCGCCAGGTCGGAAATGGTCCCAATGGTCTAATTGCCTTTGGTCTCCG,"Exon (Evx1os-201/Evx1os-201, exon 1 of 4)",6,52313498,52318378,4881,1,Evx1-201,1293,Evx1-201;Evx1-202,Evx1;Evx1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,19,14028,ENSMUSG00000005503,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
9624,cg24865442,-0.00000544,0.00000316,-1.720326852,0.086370969,loss,ns,-0.0000141,0.00000537,-2.622624554,0.009156618,neg,ns,-0.001387263,0.001573322,-0.881741021,0.378600024,neg,ns,0.421819363,-0.00013516,0.0000541,-2.498031725,0.013006344,neg,ns,0.908951987,Nav2,Nav2_Exon,7,49554220,49554269,49554220,49554221,50,+,CGCACCTTGATAGGAACACTTTGCCTAAGAAAGGACTCAGGTATCTGTGT,"Exon (Nav2-204/Nav2, exon 18 of 40)",7,48959097,49606821,647725,1,Nav2-204,595123,Nav2-204;Nav2-202;Nav2-216;Nav2-207;Nav2-213,Nav2;Nav2;Nav2;Nav2;Nav2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,7,78286,ENSMUSG00000052512,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17649,cg06813117,0.0000892,0.00000672,13.26926732,3.95E-32,gain,yes,-0.00003,0.0000114,-2.622460245,0.009160936,neg,ns,0.007606163,0.003346522,2.272856372,0.023719037,pos,ns,1.624902942,-0.000111174,0.000115087,-0.966001618,0.33479636,neg,ns,0.150529083,Zic1,Zic1_fiveUTR,9,91365759,91365808,91365759,91365760,50,-,CGAGACTGATAGCAGCAATCATTCCTGCAGATAAATGAATTGAAAGGACG,Promoter (<=1kb),9,91358058,91365768,7711,2,Zic1-201,0,Zic1-201;Zic1-202;Zic1-203;Zic4-208;Zic4-206;Zic4-207;Zic4-211;Zic4-204;Zic4-203,Zic1;Zic1;Zic1;Zic4;Zic4;Zic4;Zic4;Zic4;Zic4,0;0;-2705;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,10,22771,ENSMUSG00000032368,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
33,cg18472228,-0.00000455,0.00000198,-2.297659514,0.02224696,loss,ns,0.00000883,0.00000337,2.622398179,0.009162568,pos,ns,0.001755983,0.000986131,1.780679309,0.075944068,pos,ns,1.119506144,-0.0000257,0.0000339,-0.757030313,0.449606689,neg,ns,0.064428273,Bambi,Bambi_fiveUTR,18,3508205,3508254,3508205,3508206,50,+,CGTCAATGGATCGCCACTCCAGCTACATCTTCATCTGGCTGCAGCTGGAG,Promoter (<=1kb),18,3507923,3516404,8482,1,Bambi-201,282,Bambi-201,Bambi,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,3,68010,ENSMUSG00000024232,conserved gene and region,18,3507574,3508217,644,*,644,75,0.695652174,0.973790323,0.116459627,1.73E-62,CpGisland,TRUE,U1,Pr-A
18555,cg06493080,0.000002,0.0000019,1.054241308,0.292593426,gain,ns,0.00000847,0.00000323,2.622024941,0.009172386,pos,ns,0.001656961,0.000946514,1.750593201,0.081005208,pos,ns,1.091487061,0.0000222,0.0000326,0.682584561,0.495379135,pos,ns,0.045443868,Hoxb7,Hoxb7_fiveUTR,11,96286649,96286698,96286697,96286698,50,-,CTCTAATTCTGTAATATATCAAGGAATCTCGTAAAACCGACACTAAAACG,Promoter (<=1kb),11,96286623,96290162,3540,1,Hoxb7-201,26,Hoxb7-201;Hoxb7-202;Hoxb8-201;Hoxb8-202;Hoxb8-203,Hoxb7;Hoxb7;Hoxb8;Hoxb8;Hoxb8,0;-2017;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,8,15415,ENSMUSG00000038721,conserved gene and region,11,96286678,96287286,609,*,609,56,0.622331691,0.952625698,0.091954023,1.47E-40,CpGisland,TRUE,U3,Pr-B
11094,cg20322035,-0.00000933,0.00000343,-2.724000284,0.006815459,loss,ns,0.0000153,0.00000582,2.622020482,0.009172503,pos,ns,0.003384736,0.001705491,1.984610742,0.048069126,pos,ns,1.318133779,-0.0000855,0.0000587,-1.45703105,0.146119976,neg,ns,0.928564981,Gm13518,Gm13518_Intergenic_downstream,2,56550322,56550371,56550370,56550371,50,-,GGCTTTTAGCAGCGTATCATCATATCAAGAACTATTTTTACCCTTTGGCG,Distal Intergenic,2,56039853,56040085,233,1,Gm13518-201,510518,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,37,37,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21577,cg13138986,0.0000205,0.00000965,2.118955653,0.034889145,gain,ns,0.000043,0.0000164,2.621436891,0.009187874,pos,ns,0.00629331,0.004804411,1.309902546,0.191198657,pos,ns,0.718515164,-0.000249637,0.000165223,-1.510909366,0.131830188,neg,ns,0.592862585,Zfhx3,Zfhx3_Intron,8,108433285,108433334,108433285,108433286,50,-,CGTCATTAAATATTTGTAGGATAACAGGAGAAGCCTAATTTAGTTTTTGT,"Intron (Zfhx3-204/Zfhx3, intron 3 of 15)",8,107942644,108961630,1018987,1,Zfhx3-204,490641,Zfhx3-204,Zfhx3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,114,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12535,cg10931620,-0.0000927,0.0000117,-7.896014053,5.03E-14,loss,yes,0.0000523,0.00002,2.620947879,0.009200771,pos,ns,-0.016410346,0.005846271,-2.806976576,0.005317579,neg,ns,2.27428605,0.0004865,0.000201053,2.41976483,0.016105512,pos,ns,0.693751609,Elac2,Elac2_Intergenic_upstream,11,64955197,64955246,64955245,64955246,50,-,ATGTGGCAGACATTTCCTGAACACACCAAAAATTTGACAACCAGCTCCCG,Distal Intergenic,11,64979038,65002069,23032,1,Elac2-201,-23841,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,68626,ENSMUSG00000020549,conserved gene and region,11,64955245,64955319,75,*,75,8,0.586666667,1.242236025,0.106666667,0.00000133,CpGisland,TRUE,U11,Tr-P
22315,cg11084334,0.000238175,0.00000994,23.9651613,1.53E-72,gain,yes,-0.0000443,0.0000169,-2.620943874,0.009200877,neg,ns,0.01748183,0.004946436,3.534227305,0.000471279,pos,ns,3.326722247,0.0000749,0.000170108,0.44043957,0.659925726,pos,ns,0.34734185,Lhfpl4,Lhfpl4_Exon,6,113194076,113194125,113194124,113194125,50,+,TGTCGCCCACCCAGTAGGGCTGGATGAAGACCACCACGTTGATGATGGCG,"Exon (Lhfpl4-201/Lhfpl4, exon 2 of 4)",6,113168090,113195384,27295,2,Lhfpl4-201,1259,Lhfpl4-201;Lhfpl4-202,Lhfpl4;Lhfpl4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,7,269788,ENSMUSG00000042873,conserved gene and region,6,113193884,113194365,482,*,482,42,0.668049793,0.8053467,0.08713693,1.49E-29,CpGisland,TRUE,U13,Hc-P
24032,cg27093665,0.00000845,0.00000975,0.86748327,0.38634827,gain,ns,0.0000434,0.0000166,2.620859714,0.009203098,pos,ns,0.010733136,0.004850253,2.2129024,0.027632637,pos,ns,1.558577664,-0.0000461,0.0001668,-0.276531869,0.782323864,neg,ns,0.333498262,Cux2,Cux2_Intron,5,122048510,122048559,122048558,122048559,50,+,ACGTTCTTGTCATTCCTTATGTTACAGAACATCAATCATAAATAAAGACG,"Intron (Gm15637-201/Gm15637-201, intron 1 of 2)",5,121856366,122049851,193486,2,Cux2-202,1292,Cux2-202;Cux2-201;Cux2-207;Cux2-203,Cux2;Cux2;Cux2;Cux2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,21,13048,ENSMUSG00000042589,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
11710,cg02909927,-0.0000795,0.0000102,-7.773077259,1.14E-13,loss,yes,0.0000455,0.0000174,2.620727358,0.009206593,pos,ns,-0.007335982,0.005091236,-1.440903862,0.150621119,neg,ns,0.822114132,0.000478747,0.000175087,2.73433761,0.006610065,pos,ns,0.854857797,Rai1,Rai1_Intron,11,60177397,60177446,60177445,60177446,50,-,TCTCTCCTTAATAATAAAATTATACCAAGCAGTTTGCGGTGTGGCAGGCG,"Intron (Rai1-201/Rai1, intron 2 of 5)",11,60105013,60199195,94183,1,Rai1-201,72384,Rai1-201;Rai1-205;Rai1-204;Rai1-207;Rai1-202;Rai1-203,Rai1;Rai1;Rai1;Rai1;Rai1;Rai1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,6,19377,ENSMUSG00000062115,conserved gene and region,11,60177433,60177548,116,*,116,11,0.629310345,0.962292609,0.094827586,0.000000019,CpGisland,TRUE,U12,Tr-I
18898,cg02263483,-0.00000885,0.00000715,-1.237414501,0.216869696,loss,ns,0.0000319,0.0000122,2.620397949,0.009215295,pos,ns,0.004593622,0.00356098,1.289988129,0.19801624,pos,ns,0.70329919,-0.000300396,0.000122462,-2.45297357,0.014718624,neg,ns,0.873882542,Dach1,Dach1_Intron,14,97868297,97868346,97868297,97868298,50,+,CGTTCCCTATATTTAGAGATTAAATCGCTCACTGCACAAACCCATTTGGA,"Intron (Dach1-201/Dach1, intron 6 of 10)",14,97786853,98169543,382691,2,Dach1-201,301197,Dach1-201;Dach1-202;Dach1-203,Dach1;Dach1;Dach1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,76,13134,ENSMUSG00000055639,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10480,cg03886135,0.000122634,0.0000105,11.62940267,3.47E-26,gain,yes,-0.0000469,0.0000179,-2.620012108,0.009225497,neg,ns,0.007471583,0.005248444,1.423580493,0.155573625,pos,ns,0.808064028,-0.00016445,0.000180494,-0.911112961,0.362943778,neg,ns,0.439832981,Rbm20,Rbm20_Exon,19,53832723,53832772,53832723,53832724,50,+,CGTCATTAACCTGGGGCTGCCCTTTGGAAAGGTCACTAATTACATCCTCA,"Exon (Rbm20-203/Rbm20, exon 6 of 14)",19,53677306,53865380,188075,1,Rbm20-203,155417,Rbm20-203,Rbm20,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,73713,ENSMUSG00000043639,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18488,cg24034621,0.0000191,0.0000042,4.540449448,0.00000805,gain,ns,-0.0000187,0.00000713,-2.619629449,0.009235625,neg,ns,-0.002884797,0.002089522,-1.380601654,0.168396078,neg,ns,0.773668028,0.0000692,0.0000719,0.963623447,0.335985822,pos,ns,0.893372302,Ube2z,Ube2z_Exon,11,96060957,96061006,96061005,96061006,50,+,TTTCCCATTGCGGTAGAAGTTGGGGTTAAACCTCACTGTGTTATTGCCCG,"Exon (Ube2z-201/Ube2z, exon 3 of 7)",11,96047432,96065388,17957,2,Ube2z-201,4382,Ube2z-201,Ube2z,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,6,268470,ENSMUSG00000014349,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14299,cg23254416,-0.00000264,0.00000337,-0.785677519,0.432656527,loss,ns,0.000015,0.00000572,2.619208497,0.009246778,pos,ns,0.003665747,0.00167489,2.188649827,0.029368113,pos,ns,1.532123961,-0.000116834,0.0000576,-2.028394352,0.043374672,neg,ns,0.934447531,Pcsk1,Pcsk1_Exon,13,75099280,75099329,75099328,75099329,50,+,CCAGAGGCTAGCTATGATTTTAATGATAATGACCATGATCCATTTCCCCG,"Exon (Pcsk1-201/Pcsk1, exon 5 of 14)",13,75089826,75134861,45036,1,Pcsk1-201,9454,Pcsk1-201;Pcsk1-202,Pcsk1;Pcsk1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,3,18548,ENSMUSG00000021587,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20775,cg10674613,-0.0000209,0.00000647,-3.229614338,0.001372573,loss,ns,-0.0000288,0.000011,-2.618980662,0.009252819,neg,ns,0.00163087,0.003221951,0.50617463,0.613093835,pos,ns,0.212473051,-0.000265378,0.000110803,-2.395053225,0.017211212,neg,ns,0.952456497,Wt1,Wt1_Exon,2,105169975,105170024,105169975,105169976,50,+,CGACCACCTGAAGACCCACACCAGGACTCATACAGGTAAAACAAGTGCGT,"Exon (Wt1-205/Wt1, exon 9 of 10)",2,105126529,105173612,47084,1,Wt1-205,43446,Wt1-205;Wt1-207;Wt1-203;Wt1-204;Wt1-201;Wt1-202;Wt1-208,Wt1;Wt1;Wt1;Wt1;Wt1;Wt1;Wt1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,6,22431,ENSMUSG00000016458,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11322,cg20138719,-0.00000233,0.00000284,-0.820442943,0.412594058,loss,ns,0.0000126,0.00000482,2.618955765,0.00925348,pos,ns,0.002953879,0.001413343,2.089993776,0.037432973,pos,ns,1.426745683,-0.0000849,0.0000486,-1.746411734,0.081729918,neg,ns,0.941307511,Xpo4,Xpo4_threeUTR,14,57602629,57602678,57602629,57602630,50,-,CGGAGTCTCTCCCTGAGTATCATCAGCTAAGAGGTAGCCTTCAGTTTAAA,3' UTR,14,57577521,57665430,87910,2,Xpo4-209,62752,Xpo4-209;Xpo4-201;Xpo4-208,Xpo4;Xpo4;Xpo4,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,3,57258,ENSMUSG00000021952,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3061,cg03542000,0.000018,0.00000719,2.505240052,0.012749496,gain,ns,0.000032,0.0000122,2.618939491,0.009253912,pos,ns,0.001729893,0.003577997,0.48348088,0.629095646,pos,ns,0.201283321,-0.0000829,0.000123047,-0.673689344,0.501010819,neg,ns,0.770251122,Lrmda,Lrmda_Intron,14,22495146,22495195,22495146,22495147,50,-,CGGTATTGTGAAATCTTTTCATTGTCACCAACGGGCCTATGAGGAACTGA,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,475434,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206;Lrmda-202,Lrmda;Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22838,cg25100525,0.000308705,0.0000278,11.08561722,2.81E-24,gain,yes,-0.00012387,0.0000473,-2.618309901,0.009270626,neg,ns,0.016507262,0.013859925,1.191006588,0.234562124,pos,ns,0.629742114,-0.000370849,0.000476642,-0.778046391,0.437135075,neg,ns,0.525039476,Meis2,Meis2_Intron,2,116009257,116009306,116009257,116009258,50,-,CGGTATAAGCAGCATTTAGCAAATTCAGCCTCAAATGGCTCCAAATGCTC,"Intron (Meis2-201/Meis2, intron 7 of 11)",2,115863064,116065047,201984,2,Meis2-201,55741,Meis2-201;Meis2-203;Meis2-205;Meis2-206;Meis2-204;Meis2-202;Meis2-216;Meis2-217;Meis2-213,Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,45,97,17536,ENSMUSG00000027210,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10200,cg13036782,0.000011,0.0000043,2.551241197,0.011214038,gain,ns,0.0000191,0.00000731,2.618207777,0.00927334,pos,ns,0.008237267,0.002141949,3.845688587,0.000145917,pos,ns,3.835895251,-0.0000675,0.0000737,-0.916074562,0.360339853,neg,ns,0.083764268,Hoxa9,Hoxa9_Promoter,6,52230966,52231015,52231014,52231015,50,+,ACAGCCACAATCCAGATATACTAGCAAGCCATAAAACTGAACAAAAGCCG,Promoter (<=1kb),6,52223963,52231089,7127,2,Hoxa9-203,74,Hoxa10-202;Hoxa10-203;Hoxa10-201;Hoxa10-204;Hoxa9-201;Hoxa9-203;Hoxa9-202;Hoxa9-204;Hoxa9-205,Hoxa10;Hoxa10;Hoxa10;Hoxa10;Hoxa9;Hoxa9;Hoxa9;Hoxa9;Hoxa9,0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,1,14,15405,ENSMUSG00000038227,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
11564,cg17499716,-0.00000715,0.00000435,-1.642323164,0.10153701,loss,ns,-0.0000194,0.0000074,-2.618004607,0.009278741,neg,ns,-0.003028148,0.002166821,-1.397506991,0.16326049,neg,ns,0.787118904,-0.000145943,0.0000745,-1.958520834,0.051065339,neg,ns,0.928665333,Fbxo33,Fbxo33_threeUTR,12,59201115,59201164,59201163,59201164,50,+,ATTCGTACCACTTAAAACTGGGGTCAGGTGGAAGTCTCACAGAGACCACG,3' UTR,12,59200655,59219725,19071,2,Fbxo33-201,18561,Fbxo33-201;Fbxo33-204;Fbxo33-202;Fbxo33-203,Fbxo33;Fbxo33;Fbxo33;Fbxo33,0;0;0;17637,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,7,11,70611,ENSMUSG00000035329,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26670,cg17024238,-0.00000753,0.00000233,-3.231136547,0.001365523,loss,ns,-0.0000104,0.00000396,-2.617633444,0.009288616,neg,ns,0.001773839,0.001159998,1.529174468,0.127240922,pos,ns,0.895373194,-0.0000647,0.0000399,-1.621722635,0.105879334,neg,ns,0.94677727,Tpr,Tpr_Exon,1,150424673,150424722,150424673,150424674,50,+,CGAGAAAAAGAAATTGCTGAAACTAGGTTTGAGGTGGCTCAGGTTGAGAG,"Exon (Tpr-203/Tpr, exon 28 of 52)",1,150392838,150449815,56978,1,Tpr-203,31835,Tpr-203;Tpr-201;Tpr-208;Tpr-213,Tpr;Tpr;Tpr;Tpr,0;0;-17;-4642,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,108989,ENSMUSG00000006005,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27963,cg21853614,0.0000224,0.0000115,1.94973658,0.052108864,gain,ns,-0.0000512,0.0000195,-2.617512191,0.009291844,neg,ns,-0.008993936,0.005727013,-1.570440959,0.11733265,neg,ns,0.930581119,-0.000225701,0.000196952,-1.145973625,0.252689902,neg,ns,0.791847497,Gm21362,Gm21362_Intron,1,194218684,194218733,194218732,194218733,50,-,TCGATGTTGAAGCACTCCTTTAATCAAAAGTAAATTATGTACAGGCCACG,"Intron (4930503O07Rik-201/4930503O07Rik-201, intron 1 of 2)",1,193867009,193867936,928,1,Gm21362-201,351724,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,5,100861968,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11043,cg14885144,0.00000956,0.0000152,0.628636621,0.530049882,gain,ns,-0.0000676,0.0000258,-2.617468843,0.009292998,neg,ns,-0.003252719,0.007571248,-0.429614689,0.667774402,neg,ns,0.175370233,-0.0000862,0.000260375,-0.331175107,0.740735973,neg,ns,0.36503115,Gm13518,Gm13518_Intergenic_downstream,2,56454822,56454871,56454870,56454871,50,-,TGGAAGTGGCATGGTCACAGCTGACCCCAGGGTAGTCCCTGTCTCTGCCG,Distal Intergenic,2,56039853,56040085,233,1,Gm13518-201,415018,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,37,37,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15474,cg16463349,-0.0000276,0.0000176,-1.563884365,0.11886495,loss,ns,0.0000785,0.00003,2.617416117,0.009294402,pos,ns,0.006627706,0.008781691,0.754718686,0.450990752,pos,ns,0.345832364,0.000295798,0.000302002,0.97945935,0.328116814,pos,ns,0.744382879,Sall3,Sall3_Promoter,18,80991539,80991588,80991587,80991588,50,-,ATCAGCTATTGATAATTGCAAGAAGTATACAGCAGCTACTGTATCGATCG,Promoter (4-5kb),18,80966376,80986771,20396,2,Sall3-201,-4817,Sall3-201,Sall3,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,10,20689,ENSMUSG00000024565,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
131,cg20119248,0.0000176,0.0000044,3.996279527,0.0000805,gain,ns,-0.0000196,0.00000747,-2.617080123,0.009303354,neg,ns,-0.000434867,0.002189182,-0.198643561,0.842671788,neg,ns,0.074341546,-0.000129313,0.0000753,-1.717632697,0.086862267,neg,ns,0.799781972,Kdm2a,Kdm2a_Exon,19,4324633,4324682,4324633,4324634,50,+,CGTGATGGCCTGCAGCTTGGGCACAATGGATGTCCCGTGGAGCTCTTTGG,"Exon (Kdm2a-201/Kdm2a, exon 17 of 21)",19,4314419,4398285,83867,2,Kdm2a-201,73603,Kdm2a-201;Kdm2a-202;Kdm2a-213;Kdm2a-211;Kdm2a-207;Kdm2a-214;Kdm2a-212;Kdm2a-210,Kdm2a;Kdm2a;Kdm2a;Kdm2a;Kdm2a;Kdm2a;Kdm2a;Kdm2a,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,21,30,225876,ENSMUSG00000054611,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13520,cg27224831,-0.0000537,0.0000119,-4.498284889,0.0000097,loss,ns,0.0000531,0.0000203,2.616951334,0.009306787,pos,ns,-0.009073755,0.005943054,-1.526783066,0.127834578,neg,ns,0.893351658,0.000347107,0.000204381,1.698330822,0.090448743,pos,ns,0.759257895,Mamld1,Mamld1_Intron,X,71053977,71054026,71054025,71054026,50,+,CTGCCACTGACGCTGACAGTGACACAGATGTGTGGGTTGAAATAGGAACG,"Intron (Mamld1-203/Mamld1, intron 1 of 4)",20,71050240,71154947,104708,1,Mamld1-203,3737,Mamld1-203;Mamld1-202;Mamld1-201,Mamld1;Mamld1;Mamld1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,333639,ENSMUSG00000059401,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26228,cg05578172,0.0000209,0.00000437,4.786172807,0.00000264,gain,ns,-0.0000194,0.00000742,-2.616923963,0.009307517,neg,ns,-0.00173338,0.002173783,-0.797402482,0.425827659,neg,ns,0.370766134,0.000135035,0.0000748,1.806340468,0.07183487,pos,ns,0.851729397,Trrap,Trrap_Exon,5,144839595,144839644,144839643,144839644,50,+,GGGTAAACCGACCTGGTCCGGCATGCATTCATCATGTAATTTTCCAGACG,"Exon (Trrap-203/Trrap, exon 58 of 71)",5,144768794,144859778,90985,1,Trrap-203,70801,Trrap-203;Trrap-201;Trrap-202;Trrap-215;Trrap-207;Trrap-204,Trrap;Trrap;Trrap;Trrap;Trrap;Trrap,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,100683,ENSMUSG00000045482,conserved gene but different region,5,144839418,144839668,251,*,251,15,0.593625498,0.683551198,0.059760956,1.51E-08,CpGisland,TRUE,U10,Tr-S
3775,cg17251355,-0.0000212,0.0000102,-2.080996449,0.038254856,loss,ns,-0.0000452,0.0000173,-2.616552258,0.009317433,neg,ns,-0.015461222,0.005064984,-3.052570613,0.002465358,neg,ns,2.608119939,0.000199693,0.000174184,1.146444255,0.252495515,pos,ns,0.79819472,5730522E02Rik,5730522E02Rik_Intron,11,25335629,25335678,25335677,25335678,50,-,TGAAGCCGACCCATGAGTAATTTCTGAGTAGGTATTAAAACACCCTCACG,"Intron (4933427E13Rik-204/4933427E13Rik-204, intron 1 of 1)",11,25602816,25620098,17283,2,5730522E02Rik-205,284469,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,90,70626,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21243,cg24000268,0.00000328,0.00000367,0.894570477,0.371710758,gain,ns,-0.0000163,0.00000623,-2.616486678,0.009319184,neg,ns,-0.001863547,0.00182494,-1.02115526,0.307977118,neg,ns,0.51148155,-0.0000402,0.0000628,-0.640015783,0.522635069,neg,ns,0.898376979,Gm13902,Gm13902_Promoter,2,106931565,106931614,106931565,106931566,50,+,CGCTGTTCTTCAGTTCCCATCAGCGACAACTAAAGGCCAATTCAAGGTTG,Promoter (4-5kb),2,106926565,106927169,605,2,Gm13902-201,-4396,Gm13902-201,Gm13902,-4396,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,3,677260,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17805,cg07475235,0.0000724,0.0000058,12.47287641,3.27E-29,gain,yes,-0.0000258,0.00000986,-2.616415171,0.009321093,neg,ns,0.002783971,0.002887711,0.964075381,0.335759573,pos,ns,0.473971596,0.000187667,0.0000993,1.889741508,0.059725401,pos,ns,0.202566196,Irx3,Irx3_Exon,8,91805154,91805203,91805154,91805155,50,+,CGCTCTGTGAAGCGTAGACAAGAATTTAATGATTTAATTACAGTTGTAAG,Promoter (3-4kb),8,91798525,91802067,3543,2,Irx3-202,-3087,Irx3-201;Irx3-202,Irx3;Irx3,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,16,36,16373,ENSMUSG00000031734,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
26277,cg22989345,-0.00000577,0.00000835,-0.691183386,0.489967559,loss,ns,0.0000371,0.0000142,2.616323646,0.009323537,pos,ns,0.015138042,0.004154946,3.643378328,0.000315342,pos,ns,3.501217872,0.0000326,0.000142888,0.228442008,0.819453251,pos,ns,0.198450422,Cfap61,Cfap61_Intergenic_downstream,2,146217453,146217502,146217453,146217454,50,-,CGACCAGGAGGCCACACATCACTGAACAAATAGGCTCTCTCTAGACAAAT,Downstream (2-3kb),2,146214613,146214795,183,1,Cfap61-214,2889,Cfap61-206;Cfap61-209;Cfap61-208;Cfap61-210;Cfap61-214;Insm1-201,Cfap61;Cfap61;Cfap61;Cfap61;Cfap61;Insm1,0;170202;65109;3188;2840;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,2,13,78774,ENSMUSG00000037143,mapped to different genes,2,146217359,146217454,96,*,96,9,0.635416667,0.929032258,0.09375,0.000000648,CpGisland,TRUE,U13,Hc-P
8895,cg01553057,0.0000331,0.00000894,3.698964067,0.000256024,gain,ns,-0.0000397,0.0000152,-2.616248405,0.009325547,neg,ns,0.002938739,0.004447657,0.660738785,0.509270551,pos,ns,0.293051436,-0.0000899,0.000152955,-0.587469902,0.557315807,neg,ns,0.737187593,Cyfip2,Cyfip2_Exon,11,46272625,46272674,46272673,46272674,50,-,CATAGTGAGCACTGGTCTTAATGTATCTGGCCAGCTCTATCTGCATGTCG,"Exon (Cyfip2-205/Cyfip2, exon 10 of 31)",11,46193850,46312358,118509,2,Cyfip2-205,39684,Cyfip2-205;Cyfip2-201;Cyfip2-202;Cyfip2-204,Cyfip2;Cyfip2;Cyfip2;Cyfip2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,8,76884,ENSMUSG00000020340,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23500,cg00167491,0.00000507,0.00000239,2.126557165,0.03424658,gain,ns,0.0000106,0.00000405,2.616137467,0.00932851,pos,ns,0.00179136,0.001187125,1.50899071,0.132319654,pos,ns,0.878375643,-0.0000844,0.0000408,-2.06732737,0.039532974,neg,ns,0.054463232,Fgf10,Fgf10_fiveUTR,13,118715368,118715417,118715368,118715369,50,-,CGAGAGTTTCAGTACAATGTGGAAATGGATACTGACACATTGTGCCTCAG,5' UTR,13,118669791,118789334,119544,1,Fgf10-202,45577,Fgf10-202;Fgf10-203;Fgf10-201,Fgf10;Fgf10;Fgf10,0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,2,14165,ENSMUSG00000021732,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
8491,cg18033436,0.0000209,0.00000197,10.61095681,1.21E-22,gain,yes,-0.00000876,0.00000335,-2.615669125,0.009341032,neg,ns,0.00021964,0.000980945,0.223906458,0.82297758,pos,ns,0.084611996,0.0000462,0.0000337,1.369550224,0.17181861,pos,ns,0.038973285,Lbx1,Lbx1_Intergenic_downstream,19,45229277,45229326,45229277,45229278,50,+,CGTCCCTTTCAGGGGGGACTCATGCATCAAACTTCAATTTTCCGGACGAT,Distal Intergenic,19,45232684,45235812,3129,2,Lbx1-201,6486,Lbx1-201,Lbx1,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,30,50,16814,ENSMUSG00000025216,mapped to different genes,19,45229134,45229278,145,*,145,10,0.703448276,0.61026936,0.068965517,0.00000206,CpGisland,TRUE,U13,Hc-P
26886,cg03134455,-0.00000393,0.0000018,-2.178419109,0.030128002,loss,ns,0.00000801,0.00000306,2.615620142,0.009342342,pos,ns,0.001896732,0.000896909,2.114742609,0.035249714,pos,ns,1.452844397,-0.0000242,0.0000308,-0.785105571,0.432991264,neg,ns,0.94964573,Prdm16,Prdm16_Intron,4,154456678,154456727,154456678,154456679,50,+,CGCAGCCGGCTAAGAGCCCATGCCAGCAGTAATCAAACGCAAAATCTGCA,"Intron (Prdm16-201/Prdm16, intron 3 of 16)",4,154316125,154636866,320742,2,Prdm16-201,180139,Prdm16-201;Prdm16-202;Prdm16-203;Prdm16-204;Prdm16-205;Prdm16-206;Prdm16-210;Prdm16-207,Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,32,70673,ENSMUSG00000039410,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27622,cg06570848,-0.00000263,0.0000102,-0.256421712,0.797795309,loss,ns,0.0000455,0.0000174,2.615438593,0.0093472,pos,ns,0.01021261,0.005099977,2.002481685,0.046103591,pos,ns,1.33626525,-0.000160851,0.000175388,-0.917116143,0.359794715,neg,ns,0.757786867,Kcnj10,Kcnj10_Intron,1,172350016,172350065,172350064,172350065,50,-,GTCCTGCCCATTGTCAAAGCCCCTTTGTGCCAGGGAGCTCCATTGAGGCG,"Intron (Kcnj10-201/Kcnj10, intron 1 of 1)",1,172341210,172374085,32876,1,Kcnj10-201,8806,Kcnj10-201,Kcnj10,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,16513,ENSMUSG00000044708,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25062,cg13128792,0.0000017,0.00000451,0.377222044,0.706266705,gain,ns,-0.0000201,0.00000767,-2.614734812,0.009366056,neg,ns,-0.008172294,0.002246777,-3.637340538,0.000322512,neg,ns,3.491453941,0.000177865,0.0000773,2.301972894,0.021999276,pos,ns,0.863714698,Slc23a2,Slc23a2_Exon,2,132078500,132078549,132078548,132078549,50,+,ACCTAAAAGAAACGAGACCAAAACCATGATCACGGCATCGGGAACTACCG,"Exon (Slc23a2-201/Slc23a2, exon 6 of 16)",2,132052496,132145108,92613,2,Slc23a2-201,66559,Slc23a2-201;Slc23a2-202;Slc23a2-207,Slc23a2;Slc23a2;Slc23a2,0;0;-492,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,4,54338,ENSMUSG00000027340,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1562,cg02550880,-0.00000487,0.00000121,-4.006231497,0.0000773,loss,ns,0.0000054,0.00000206,2.614605076,0.009369535,pos,ns,0.001397755,0.000604526,2.312147991,0.021424529,pos,ns,1.669088721,-0.0000468,0.0000208,-2.249804204,0.025162612,neg,ns,0.965727302,Zfp521,Zfp521_Intron,18,13738894,13738943,13738894,13738895,50,+,CGCACTGGCAATCTGTCCTTAGTGGGAGTTACAAAAGAAGTCAAATGCCT,"Intron (Zfp521-201/Zfp521, intron 5 of 7)",18,13687013,13972787,285775,2,Zfp521-201,233844,Zfp521-201;Zfp521-205;Zfp521-204,Zfp521;Zfp521;Zfp521,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,81,225207,ENSMUSG00000024420,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11983,cg00106630,-0.00000192,0.00000249,-0.771784811,0.440829814,loss,ns,0.000011,0.00000422,2.614325926,0.009377026,pos,ns,0.003317714,0.001237332,2.681343695,0.007725329,pos,ns,2.112083005,-0.0000717,0.0000426,-1.684402365,0.093110422,neg,ns,0.959617835,Akap10,Akap10_fiveUTR,11,61916207,61916256,61916255,61916256,50,+,CAGCCTCCAGCAAGGCATGATTTTTAGTGCTTTTTTGTGGGGAATGTACG,Promoter (<=1kb),11,61889790,61916218,26429,2,Akap10-201,0,Akap10-202;Akap10-201;Akap10-203,Akap10;Akap10;Akap10,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,2,56697,ENSMUSG00000047804,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14396,cg17667578,-0.000015,0.00000891,-1.684019074,0.093184552,loss,ns,0.0000396,0.0000151,2.614280267,0.009378252,pos,ns,0.009214196,0.004435498,2.077375677,0.038589929,pos,ns,1.413526021,-0.0000648,0.000152536,-0.425055793,0.671090891,neg,ns,0.156511849,Asic4,Asic4_Exon,1,75450840,75450889,75450840,75450841,50,-,CGAGATTGTGTGCAAAATCAAATTTGCTGAGGAGGATGCGAAACCCAAGG,Promoter (<=1kb),1,75450436,75474340,23905,1,Asic4-202,404,Asic4-202;Asic4-201,Asic4;Asic4,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,11,241118,ENSMUSG00000033007,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
17808,cg02600036,-0.00000126,0.00000185,-0.684921752,0.493905083,loss,ns,-0.0000082,0.00000314,-2.614139199,0.00938204,neg,ns,-0.00153812,0.000919107,-1.673493005,0.095238977,neg,ns,1.021185279,0.0000407,0.0000316,1.288931811,0.198382792,pos,ns,0.959481186,Ambra1,Ambra1_Exon,2,91810052,91810101,91810100,91810101,50,+,GCCCAGAGGATGATCCAGTATCTCTCACGGAGAGACAGTATTCGCCAGCG,"Exon (Ambra1-203/Ambra1, exon 10 of 19)",2,91730134,91918849,188716,1,Ambra1-203,79918,Ambra1-203;Ambra1-205;Ambra1-206;Ambra1-209;Ambra1-204;Ambra1-202;Ambra1-201;Ambra1-207;Ambra1-208,Ambra1;Ambra1;Ambra1;Ambra1;Ambra1;Ambra1;Ambra1;Ambra1;Ambra1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,12,228361,ENSMUSG00000040506,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22390,cg00965104,-0.0000234,0.00000978,-2.394906028,0.017217994,loss,ns,-0.0000434,0.0000166,-2.61277745,0.009418675,neg,ns,0.033767329,0.004867436,6.937395759,2.34E-11,pos,yes,10.63158485,-0.001100976,0.000167391,-6.577280361,2.04E-10,neg,yes,0.883554411,Ubp1,Ubp1_Exon,9,113959408,113959457,113959456,113959457,50,-,TGAACATGAGCAGAAAAAGTCCAGCAAGCGGACTTTGCCAGCAGACTACG,"Exon (Ubp1-202/Ubp1, exon 9 of 17)",9,113930934,113977199,46266,1,Ubp1-201,28474,Fbxl2-202;Ubp1-201;Ubp1-202;Ubp1-204;Ubp1-203;Ubp1-207;Ubp1-206,Fbxl2;Ubp1;Ubp1;Ubp1;Ubp1;Ubp1;Ubp1,67272;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,22221,ENSMUSG00000009741,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19974,cg10676006,0.0000215,0.0000104,2.05410173,0.04080412,gain,ns,-0.0000464,0.0000178,-2.612547574,0.009424873,neg,ns,0.002085692,0.00520089,0.401025975,0.68867727,pos,ns,0.161984251,-0.000213441,0.000178858,-1.193352535,0.233643812,neg,ns,0.556682012,9630041A04Rik,9630041A04Rik_Intron,9,101845105,101845154,101845153,101845154,50,-,GATTCACAGGTTTGCTGAAGCCTGGAAAAGATCAAATGTTATGAGCCTCG,"Intron (Gm29521-201/Gm29521-201, intron 1 of 3)",9,101861841,101943228,81388,1,9630041A04Rik-204,-16736,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,3,442798,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26956,cg03448685,0.0000151,0.00000535,2.816599073,0.00516477,gain,ns,-0.0000237,0.00000908,-2.612536168,0.00942518,neg,ns,0.003800432,0.00266114,1.428121643,0.154263519,pos,ns,0.811736766,-0.000190901,0.0000915,-2.085978308,0.037797891,neg,ns,0.866261441,Ncoa6,Ncoa6_Exon,2,155421112,155421161,155421160,155421161,50,+,GTTATTTTGAGGTGGCCTTGGTCCCATCTGCTGCTGAGTTTGGTTAACCG,"Exon (Ncoa6-201/Ncoa6, exon 6 of 14)",2,155390656,155440783,50128,2,Ncoa6-201,19622,Ncoa6-201;Ncoa6-203;Ncoa6-204;Ncoa6-206;Ncoa6-202,Ncoa6;Ncoa6;Ncoa6;Ncoa6;Ncoa6,0;0;0;-2209;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,56406,ENSMUSG00000038369,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14259,cg27144659,-0.000003,0.00000235,-1.276557388,0.202714015,loss,ns,0.0000104,0.00000399,2.612351123,0.009430171,pos,ns,0.003599772,0.001169285,3.078609112,0.002265637,pos,ns,2.644809699,-0.000108983,0.0000402,-2.710240934,0.007097783,neg,ns,0.940115345,Hmgxb4,Hmgxb4_threeUTR,8,74999975,75000024,75000023,75000024,50,+,CTGACTCAGTGGCCTATTTAACAGGACAGTGGTTCTTGTTCTGAGTGCCG,3' UTR,8,74993356,75031972,38617,1,Hmgxb4-201,6619,Hmgxb4-201;Hmgxb4-207;Hmgxb4-206;Hmgxb4-205;Hmgxb4-208;Hmgxb4-204;Hmgxb4-209,Hmgxb4;Hmgxb4;Hmgxb4;Hmgxb4;Hmgxb4;Hmgxb4;Hmgxb4,0;0;0;6284;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,2,70823,ENSMUSG00000034518,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7704,cg18659931,0.0000173,0.00001,1.727426836,0.085087034,gain,ns,0.0000446,0.0000171,2.612349215,0.009430223,pos,ns,0.007258167,0.004996145,1.452753583,0.147303626,pos,ns,0.831786563,-0.000046,0.000171817,-0.267859637,0.7889855,neg,ns,0.68074633,Arhgap15,Arhgap15_Intron,2,43787276,43787325,43787276,43787277,50,-,CGAATCACGTTACCTTGTCATTTCTCTGCATGGATCAAGAAGAGATGAGC,"Intron (Arhgap15-203/Arhgap15, intron 2 of 14)",2,43748824,44395953,647130,1,Arhgap15-203,38452,Arhgap15-203;Arhgap15-202;Arhgap15-205;Arhgap15-201,Arhgap15;Arhgap15;Arhgap15;Arhgap15,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,72,78,76117,ENSMUSG00000049744,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26714,cg08434263,0.00015701,0.0000291,5.389298509,0.00000014,gain,yes,0.000129294,0.0000495,2.612302899,0.009431473,pos,ns,0.042869633,0.014500131,2.956499602,0.003350449,pos,ns,2.474897036,-0.00108554,0.000498658,-2.176921141,0.030240676,neg,ns,0.368629461,Huwe1,Huwe1_Intron,X,151802993,151803042,151803041,151803042,50,-,GGCAGTTTTCAGGACATGGCCGAGATTTGGCGCTGAGCTGTGTCATCGCG,"Intron (Huwe1-214/Huwe1, intron 2 of 5)",20,151800883,151804511,3629,1,Huwe1-214,2110,Huwe1-204;Huwe1-214;Huwe1-221;Huwe1-222;Huwe1-217;Huwe1-210;Huwe1-201;Huwe1-207;Huwe1-206;Huwe1-223;Huwe1-212;Huwe1-216;Huwe1-218,Huwe1;Huwe1;Huwe1;Huwe1;Huwe1;Huwe1;Huwe1;Huwe1;Huwe1;Huwe1;Huwe1;Huwe1;Huwe1,2186;0;0;-201;-219;-285;0;-305;-305;-616;-620;-620;-620,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,28,59026,ENSMUSG00000025261,conserved gene and region,X,151802983,151803802,820,*,820,82,0.612195122,1.113245033,0.1,2.85E-62,CpGisland,TRUE,U9,En-Pp
14370,cg06584607,0.00000291,0.00000513,0.568377082,0.57019043,gain,ns,0.0000228,0.00000871,2.612015525,0.00943923,pos,ns,-0.001623944,0.002551868,-0.636374737,0.525001785,neg,ns,0.27983922,0.000127865,0.0000878,1.457004799,0.146127218,pos,ns,0.809547455,Speg,Speg_Exon,1,75384019,75384068,75384067,75384068,50,-,CTGCTCCTATGGAAGCGAAGTTTTCCGCTCCTGCAGAAAGCAAAGTTACG,"Exon (Speg-214/Speg, exon 3 of 6)",1,75375297,75432320,57024,1,Speg-201,8722,Speg-201;Speg-214;Speg-205;Speg-215;Speg-208;Speg-213;Speg-207;Speg-210;Speg-209;Speg-211,Speg;Speg;Speg;Speg;Speg;Speg;Speg;Speg;Speg;Speg,0;0;0;0;0;0;0;0;-1444;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,9,11790,ENSMUSG00000026207,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
27584,cg07965068,0.00000543,0.00000613,0.885670367,0.376481668,gain,ns,0.0000272,0.0000104,2.611876324,0.009442989,pos,ns,0.000339762,0.003051294,0.111350042,0.911410834,pos,ns,0.040285813,0.000130619,0.000104934,1.244772243,0.214155681,pos,ns,0.919133619,Zfp217,Zfp217_Intergenic_downstream,2,170072127,170072176,170072175,170072176,50,-,GCATGGACAGAAAATATACCCCTCACATCATCGGATTGAGATGGCAGTCG,Downstream (<1kb),2,170120333,170131220,10888,2,Zfp217-204,59093,Tshz2-203;Tshz2-205,Tshz2;Tshz2,0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,4,4,228913,ENSMUSG00000052056,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18231,cg05686715,0.00000695,0.00000589,1.17940051,0.239143071,gain,ns,-0.0000261,0.00001,-2.611157328,0.009462429,neg,ns,-0.008077018,0.002932915,-2.753922,0.00623621,neg,ns,2.205079248,-0.000159206,0.000100863,-1.57844163,0.115484019,neg,ns,0.819939148,Ap3b1,Ap3b1_Intron,13,94561162,94561211,94561162,94561163,50,-,CGTCTTTCTTACTAATAGGATTCTGTCTGCTTCAGCAGGCAGTAATTGAA,"Intron (Ap3b1-201/Ap3b1, intron 26 of 26)",13,94358960,94566317,207358,1,Ap3b1-201,202202,Ap3b1-201;Ap3b1-205;Ap3b1-203,Ap3b1;Ap3b1;Ap3b1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,55,11774,ENSMUSG00000021686,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11049,cg20638025,-0.0000234,0.0000079,-2.959568341,0.003318179,loss,ns,0.000035,0.0000134,2.611155812,0.00946247,pos,ns,0.012502724,0.003931866,3.179845048,0.00162252,pos,ns,2.789810019,-0.000300235,0.000135217,-2.220402123,0.027114281,neg,ns,0.810621408,Gm13518,Gm13518_Intergenic_downstream,2,56456746,56456795,56456746,56456747,50,-,CGAATGTCAGAAAGTACTGTTAATTTCACGGGGTTAGGGGAAAGTAAATT,Distal Intergenic,2,56039853,56040085,233,1,Gm13518-201,416942,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,37,37,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4757,cg25268091,0.0000215,0.000019,1.130094725,0.259309933,gain,ns,0.0000845,0.0000324,2.611154808,0.009462498,pos,ns,0.036956648,0.009478451,3.899017643,0.000118431,pos,ns,3.926535766,-0.001176644,0.000325963,-3.609746433,0.000357276,neg,ns,0.119476745,Ier5l,Ier5l_Intergenic_downstream,2,30470879,30470928,30470879,30470880,50,+,CGCCGCCAGCACACCACCAAGTGGCACCGAGCAGTGATAACAAACTCAAC,Downstream (<1kb),2,30471537,30474219,2683,2,Ier5l-201,3291,Ier5l-201,Ier5l,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,6,13,72500,ENSMUSG00000089762,conserved gene and region,2,30470658,30470883,226,*,226,15,0.646017699,0.664184953,0.066371681,3.62E-09,CpGisland,TRUE,U3,Pr-B
21979,cg23659896,0.0000572,0.00000492,11.6347931,3.32E-26,gain,yes,-0.0000218,0.00000835,-2.611106738,0.009463799,neg,ns,0.001965864,0.002447495,0.8032147,0.422466064,pos,ns,0.374208172,-0.0000418,0.0000842,-0.497035293,0.619516474,neg,ns,0.883092465,Faf1,Faf1_Intron,4,109953146,109953195,109953146,109953147,50,+,CGTGCTGCATCTGGTAACTAGAAAATTTAATGATCTCCTGCTGTTTTGGT,"Intron (Faf1-201/Faf1, intron 18 of 18)",4,109676588,109963960,287373,1,Faf1-201,276558,Faf1-201,Faf1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,24,14084,ENSMUSG00000010517,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13692,cg12310716,-0.0000135,0.00000518,-2.602455667,0.009700563,loss,ns,0.000023,0.0000088,2.610595298,0.00947765,pos,ns,0.005310518,0.002577701,2.060176058,0.040216044,pos,ns,1.39560065,-0.000134427,0.0000886,-1.51643563,0.130428265,neg,ns,0.585386217,Rapgef4,Rapgef4_Exon,2,72137249,72137298,72137297,72137298,50,+,GACAGTATATGGCAGGACTTCTGGCTCCTCCTTATGGTGTTATGGAAACG,"Exon (Rapgef4-202/Rapgef4, exon 5 of 31)",2,71981240,72257474,276235,1,Rapgef4-202,156009,Rapgef4-202;Rapgef4-208;Rapgef4-203;Rapgef4-201;Rapgef4-205;Rapgef4-204;Rapgef4-209,Rapgef4;Rapgef4;Rapgef4;Rapgef4;Rapgef4;Rapgef4;Rapgef4,0;0;0;0;0;0;-3430,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,11,56508,ENSMUSG00000049044,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15443,cg06666664,-0.000029,0.0000128,-2.263615405,0.02428882,loss,ns,0.0000568,0.0000218,2.610478999,0.009480803,pos,ns,0.017106617,0.00637868,2.681843073,0.007714073,pos,ns,2.11271624,-0.000379629,0.000219362,-1.730601074,0.084518054,neg,ns,0.709473197,Gm49044,Gm49044_Intergenic_upstream,14,80901904,80901953,80901904,80901905,50,+,CGTGAACCTGAGGGAAAGATAATCAAATGTTGAACCTGCTGAGCCTGTTA,Distal Intergenic,14,80930737,80931037,301,1,Gm49044-201,-28784,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17549,cg25674839,0.000000763,0.0000073,0.104580366,0.916776425,gain,ns,0.0000324,0.0000124,2.610037828,0.00949277,pos,ns,0.005995722,0.003631771,1.650908837,0.099769856,pos,ns,1.001000655,-0.000169564,0.000124896,-1.35764001,0.175565383,neg,ns,0.169935921,Gm20561,Gm20561_Intergenic_downstream,9,90903949,90903998,90903997,90903998,50,-,GGCTCATTCACTCTCAGATAGAAGCAACAGGATTATTTCACACTTAAGCG,Distal Intergenic,9,90907906,90908197,292,2,Gm20561-201,4248,Gm20561-201,Gm20561,4199,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,3,108167674,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4084,cg10604959,-0.0000102,0.00000481,-2.116855468,0.03506849,loss,ns,0.0000213,0.00000816,2.609731245,0.009501094,pos,ns,-0.001438881,0.002391962,-0.601548485,0.547914376,neg,ns,0.261287305,0.00018623,0.0000823,2.263931236,0.024269151,pos,ns,0.923694722,Gm45647,Gm45647_Intron,8,26748094,26748143,26748142,26748143,50,+,CTCTAAGATCCCAATCAATTTCTGCCTCTCAAGGGCACGCTTGAAAAGCG,"Intron (Gm45646-201/Gm45646-201, intron 2 of 2)",8,26780315,26780509,195,1,Gm45647-201,-32172,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,62,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14043,cg13861044,-0.0000018,0.00000556,-0.323190329,0.746769002,loss,ns,0.0000247,0.00000945,2.608460109,0.009535676,pos,ns,0.002133262,0.002768934,0.770426912,0.441633429,pos,ns,0.35493806,0.0000398,0.0000952,0.417945236,0.676276507,pos,ns,0.917933025,Lnpk,Lnpk_Intergenic_downstream,2,74426937,74426986,74426937,74426938,50,+,CGGAGCTCTCAGTCCCAGCATATTGTGCAGATGTGGGCTAGCAGCTGCTC,Distal Intergenic,2,74520341,74533106,12766,2,Lnpk-204,106120,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,15,16,69605,ENSMUSG00000009207,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26762,cg13996925,0.0000399,0.0000195,2.046833065,0.041517434,gain,ns,0.0000865,0.0000332,2.608449016,0.009535979,pos,ns,0.034639158,0.00971305,3.566249249,0.000419303,pos,ns,3.37747153,-0.001147293,0.000334031,-3.434691096,0.000674015,neg,ns,0.431929376,Iqsec2,Iqsec2_Exon,X,152144545,152144594,152144593,152144594,50,+,GAGCTGAACAACATCATCGAGAGCCAGCAGCAGCTGCTGGAAACCCAGCG,Promoter (<=1kb),20,152144268,152225235,80968,1,Iqsec2-207,277,Iqsec2-207;Iqsec2-202;Iqsec2-203,Iqsec2;Iqsec2;Iqsec2,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,16,245666,ENSMUSG00000041115,conserved gene and region,X,152144075,152144600,526,*,526,69,0.796577947,0.837463658,0.131178707,1.27E-61,CpGisland,TRUE,U3,Pr-B
20027,cg25820456,0.0000277,0.00000775,3.572520283,0.000409776,gain,ns,-0.0000343,0.0000132,-2.608017674,0.00954774,neg,ns,-0.00017192,0.003855376,-0.044592322,0.964460973,neg,ns,0.015715342,-0.00054631,0.000132586,-4.120419055,0.0000486,neg,ns,0.582756099,Rarg,Rarg_Exon,15,102241867,102241916,102241915,102241916,50,-,TGGTAGCCAGAGGACTTGTCATTGCACACGAAGCATGGCTTGTAGACCCG,"Exon (Rarg-201/Rarg, exon 4 of 10)",15,102234938,102257517,22580,2,Rarg-201,15601,Rarg-201;Rarg-202;Rarg-205;Rarg-204;Rarg-203;Rarg-206,Rarg;Rarg;Rarg;Rarg;Rarg;Rarg,0;0;0;1673;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,19411,ENSMUSG00000001288,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9656,cg16113843,-0.00000174,0.00000266,-0.653412434,0.513974765,loss,ns,-0.0000118,0.00000452,-2.605925528,0.009604969,neg,ns,-0.00175878,0.00132379,-1.328594193,0.184959056,neg,ns,0.732924399,0.00000801,0.0000455,0.175882926,0.860500755,pos,ns,0.912096639,Iars,Iars_Exon,13,49706731,49706780,49706731,49706732,50,-,CGTGACTGGACAATTTCCAGAAACAGATACTGGGGCACCCCCATCCCACT,"Exon (Iars-206/Iars, exon 14 of 34)",13,49682100,49734267,52168,1,Iars-206,24631,Iars-206;Iars-201;Iars-202;Iars-208;Iars-204;Iars-203,Iars;Iars;Iars;Iars;Iars;Iars,0;0;0;0;0;-1436,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,105148,ENSMUSG00000037851,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9716,cg26621766,-0.00000208,0.00000339,-0.61392715,0.539713717,loss,ns,0.000015,0.00000576,2.605462318,0.009617681,pos,ns,0.007483484,0.001687569,4.434477081,0.0000128,pos,ns,4.891741915,-0.00019176,0.000058,-3.304201626,0.001064055,neg,ns,0.910118019,Bbx,Bbx_Exon,16,50197580,50197629,50197628,50197629,50,-,AAGTACAGGAGCCTGCGGCATTTCTTTTGGCTGTCCATCATGGGTGAGCG,"Exon (Bbx-208/Bbx, exon 17 of 17)",16,50191844,50432390,240547,2,Bbx-208,234761,Bbx-208;Bbx-201;Bbx-203;Bbx-205,Bbx;Bbx;Bbx;Bbx,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,10,70508,ENSMUSG00000022641,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10129,cg11256338,-0.00000708,0.00000516,-1.372785407,0.170811331,loss,ns,0.0000228,0.00000876,2.605114839,0.009627228,pos,ns,0.005398169,0.002567484,2.102512835,0.036314542,pos,ns,1.439919424,-0.000134967,0.0000883,-1.528578654,0.127388628,neg,ns,0.924602981,Gls,Gls_Exon,1,52200623,52200672,52200623,52200624,50,+,CGAAGTTTACAAAGCAGTAAGTTGTAGATCTGAAATCAAACGTATTAATT,"Exon (Gls-210/Gls, exon 6 of 11)",1,52163448,52233223,69776,2,Gls-204,32551,Gls-204;Gls-203;Gls-202;Gls-201;Gls-216;Gls-205;Gls-210;Gls-214;Gls-213;Gls-212,Gls;Gls;Gls;Gls;Gls;Gls;Gls;Gls;Gls;Gls,0;0;0;0;0;-3249;0;-249;14922;13861,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,6,14660,ENSMUSG00000026103,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13942,cg10890721,-0.000000328,0.00000367,-0.089378283,0.928838998,loss,ns,0.0000162,0.00000624,2.60497808,0.009630987,pos,ns,0.001916282,0.0018272,1.048753209,0.295108656,pos,ns,0.530018052,-0.00000735,0.0000628,-0.116929123,0.906991936,neg,ns,0.531458569,Mex3c,Mex3c_Exon,18,73590738,73590787,73590738,73590739,50,-,CGCCATCATGTCCAGTTTGCCAGACAGCTGTTACTCAGGCAATCCAAATT,"Exon (Mex3c-201/Mex3c, exon 2 of 2)",18,73573044,73592575,19532,1,Mex3c-201,17694,Mex3c-201,Mex3c,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,5,240396,ENSMUSG00000037253,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9772,cg03405660,-0.0000524,0.0000149,-3.510670291,0.000513306,loss,ns,-0.000066,0.0000253,-2.604475689,0.009644809,neg,ns,-0.005267892,0.007423729,-0.709601871,0.478484439,neg,ns,0.320132181,-0.000131872,0.000255301,-0.516533599,0.605850052,neg,ns,0.875546634,Tep1,Tep1_threeUTR,14,50824550,50824599,50824550,50824551,50,+,CGAAGCTGTCACCAGCAACTCAGGTAGCACATGGAGGGCTGTGACAGAGC,3' UTR,14,50824059,50870560,46502,2,Tep1-201,45961,Parp2-201;Parp2-206;Parp2-207;Parp2-208;Tep1-201;Tep1-202;Tep1-203;Tep1-208;Tep1-207,Parp2;Parp2;Parp2;Parp2;Tep1;Tep1;Tep1;Tep1;Tep1,16709;16604;5205;4271;0;0;0;5472;8863,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,1,21745,ENSMUSG00000006281,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4323,cg13907558,0.0000347,0.00000953,3.643656152,0.000315016,gain,ns,0.0000422,0.0000162,2.603257296,0.009678403,pos,ns,0.004643088,0.004744341,0.978657968,0.328512119,pos,ns,0.483448604,0.000381398,0.000163158,2.337604554,0.020043796,pos,ns,0.194469633,Zfp800,Zfp800_Promoter,6,28397053,28397102,28397101,28397102,50,-,ACAAAATGCACTTTTCAAACTGTATCAGAGTGGGTTCGCTTTACAGATCG,Promoter (<=1kb),6,28240240,28398005,157766,2,Zfp800-201,903,Zfp800-201,Zfp800,0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,1,10,627049,ENSMUSG00000039841,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9074,cg21041030,-0.00000713,0.00000479,-1.488227441,0.137707439,loss,ns,-0.0000212,0.00000814,-2.603103105,0.009682662,neg,ns,-0.008620399,0.002385227,-3.61407858,0.000351594,neg,ns,3.45395814,0.000211047,0.000082,2.572873441,0.010550778,pos,ns,0.87791469,Gm8863,Gm8863_Intergenic_upstream,9,46771051,46771100,46771099,46771100,50,+,TAATTTCTTTTTAAATCTCACTCAGCATCTGCGTTAAACAAGGCTGATCG,Distal Intergenic,9,46713233,46714158,926,2,Gm8863-201,-56893,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,20,667890,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14198,cg26231191,0.000119866,0.00000872,13.73834736,7.16E-34,gain,yes,-0.0000386,0.0000148,-2.602408604,0.009701865,neg,ns,0.001613414,0.0043425,0.371540298,0.710488958,pos,ns,0.148442667,0.000201646,0.000149338,1.350264541,0.177916103,pos,ns,0.361645581,Hoxd3,Hoxd3_Exon,2,74749747,74749796,74749795,74749796,50,-,AAACTTCATAAATTATAAACAAGCCGCCTTGGCCTTCGCAATAAATTCCG,"Exon (Haglr-201/Haglr-201, exon 1 of 1)",2,74745722,74748442,2721,1,Hoxd3-206,4074,Gm28230-201;Hoxd3-203;Hoxd3-202;Hoxd3-201;Hoxd3-204;Hoxd3-206,Gm28230;Hoxd3;Hoxd3;Hoxd3;Hoxd3;Hoxd3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,24,15434,ENSMUSG00000079277,mapped to different genes,2,74749625,74749796,172,*,172,17,0.61627907,1.042424242,0.098837209,3.41E-13,CpGisland,TRUE,NA,NRS
6445,cg13600326,-0.00000626,0.00000279,-2.24157061,0.025696431,loss,ns,0.0000123,0.00000474,2.602082854,0.009710884,pos,ns,-0.000390634,0.001389678,-0.281096853,0.778823639,neg,ns,0.108560875,-0.000033,0.0000478,-0.691176275,0.489972022,neg,ns,0.920355621,Grhl2,Grhl2_Exon,15,37288228,37288277,37288228,37288229,50,-,CGTCAGAAGCAGGGGGAGGGCCCCATGACCTACCTCAACAAAGGACAGTT,"Exon (Grhl2-203/Grhl2, exon 6 of 10)",15,37233036,37333647,100612,1,Grhl2-203,55192,Grhl2-203;Grhl2-201;Grhl2-206,Grhl2;Grhl2;Grhl2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,8,252973,ENSMUSG00000022286,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15264,cg06755692,0.0000295,0.00000957,3.083874,0.00222711,gain,ns,-0.0000423,0.0000163,-2.601877693,0.009716569,neg,ns,-0.008253951,0.004764268,-1.732469856,0.084184526,neg,ns,1.074767728,0.000671704,0.000163843,4.099686566,0.0000529,pos,ns,0.751780114,Hnrnpll,Hnrnpll_Exon,17,80050791,80050840,80050839,80050840,50,-,ACACATTCTTTGGCACTATCTATGTTTTCAAATTCCACTAGAGCCTGTCG,"Exon (Hnrnpll-205/Hnrnpll, exon 3 of 13)",17,80029487,80062227,32741,2,Hnrnpll-205,11387,Gpx4-ps1-201;Hnrnpll-205;Hnrnpll-201;Hnrnpll-203;Hnrnpll-204;Hnrnpll-207;Hnrnpll-206,Gpx4-ps1;Hnrnpll;Hnrnpll;Hnrnpll;Hnrnpll;Hnrnpll;Hnrnpll,-3186;0;0;0;0;0;11428,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,6,72692,ENSMUSG00000024095,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22264,cg26365768,0.00000548,0.00000273,2.006770361,0.045642153,gain,ns,-0.0000121,0.00000464,-2.601813362,0.009718352,neg,ns,-0.002189502,0.001358172,-1.612094975,0.107958848,neg,ns,0.966741759,0.00000339,0.0000467,0.072587305,0.94218134,pos,ns,0.930026844,Ryr3,Ryr3_Exon,2,112712228,112712277,112712228,112712229,50,-,CGCTTCATCCAGGAGGCCTCATCGATGCCCAGGTTGTTGTTGATGATTTT,"Exon (Ryr3-210/Ryr3, exon 66 of 102)",2,112631355,113217087,585733,2,Ryr3-210,504810,Ryr3-210;Ryr3-211;Ryr3-201;Ryr3-202;Ryr3-204,Ryr3;Ryr3;Ryr3;Ryr3;Ryr3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,5,20192,ENSMUSG00000057378,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22508,cg18051198,-0.00000199,0.00000158,-1.260242946,0.208529547,loss,ns,0.00000699,0.00000269,2.601765511,0.009719678,pos,ns,0.001224304,0.000787106,1.555450001,0.120859222,pos,ns,0.917720206,-0.0000103,0.0000271,-0.380766183,0.703637547,neg,ns,0.956938902,Rps4l-ps,Rps4l-ps_Intergenic_downstream,7,114896995,114897044,114897043,114897044,50,+,CTCACAGTTCTCGCTGGGGAGGCAGCGCGTCTGTATTAATTATCAGGACG,Distal Intergenic,7,114926959,114927726,768,2,Rps4l-ps-201,30682,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,13,19,627967,NA,mapped to different genes,7,114896968,114897083,116,*,116,9,0.50862069,1.202764977,0.077586207,0.00000318,CpGisland,TRUE,U15,NS
8718,cg18971569,0.000012,0.00000408,2.950625356,0.003413022,gain,ns,-0.000018,0.00000693,-2.601714602,0.009721089,neg,ns,-0.004845256,0.002031448,-2.385124348,0.017673982,neg,ns,1.752665591,0.000120988,0.0000699,1.73183013,0.08429858,pos,ns,0.865805066,Ddhd1,Ddhd1_threeUTR,14,45599136,45599185,45599136,45599137,50,-,CGGAAAAAGAAGTTGTGGGAGATTAAAGAACGATTCTTGAAGTCTGAAAT,3' UTR,14,45588467,45658142,69676,2,Ddhd1-203,58957,Ddhd1-203;Ddhd1-202;Ddhd1-201;Ddhd1-209;Ddhd1-205;Ddhd1-208;Ddhd1-211;Ddhd1-206,Ddhd1;Ddhd1;Ddhd1;Ddhd1;Ddhd1;Ddhd1;Ddhd1;Ddhd1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,3,114874,ENSMUSG00000037697,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23400,cg18693004,-0.0000246,0.00000932,-2.637354923,0.008776804,loss,ns,0.0000412,0.0000158,2.601645092,0.009723017,pos,ns,0.006661102,0.004639912,1.435609698,0.152121662,pos,ns,0.817808938,-0.000274033,0.000159566,-1.717360218,0.086912081,neg,ns,0.786833038,Sp4,Sp4_Exon,12,118254475,118254524,118254523,118254524,50,-,CAGTTGCATATAAAAGGTCTTTCTCCAGTATGCCAGCGAAGATGTGCTCG,"Exon (Sp4-201/Sp4, exon 5 of 6)",12,118234933,118301370,66438,2,Sp4-201,46846,Sp4-201;Sp4-203,Sp4;Sp4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,14,20688,ENSMUSG00000025323,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21515,cg11588488,-0.00000092,0.0000104,-0.088391889,0.929622282,loss,ns,-0.000046,0.0000177,-2.601610728,0.00972397,neg,ns,0.007850398,0.005179914,1.515546062,0.130653146,pos,ns,0.883880129,-0.00026539,0.000178137,-1.489807473,0.137291558,neg,ns,0.713669705,Setd3,Setd3_Intergenic_downstream,12,108069731,108069780,108069731,108069732,50,-,CGTGACCATCGACAGTGGATTGATGAAATTAAGCACAGATGGCTACTTTG,Distal Intergenic,12,108106666,108114947,8282,2,Setd3-207,45216,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,52690,ENSMUSG00000056770,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24659,cg12287916,-0.00000594,0.0000189,-0.314130147,0.753633485,loss,ns,-0.0000836,0.0000321,-2.601423187,0.009729172,neg,ns,0.037610068,0.009412535,3.99574255,0.0000806,pos,ns,4.093493337,-0.001662173,0.000323696,-5.134977472,0.000000499,neg,yes,0.625783907,Srcap,Srcap_fiveUTR,7,127516016,127516065,127516016,127516017,50,+,CGGTGGCCGGTGGCCCAGAATGAGGCCAGCTCCCAGCATGCCCTGCAGCC,5' UTR,7,127511983,127527040,15058,1,Srcap-203,4033,Gm42715-201;Srcap-203;Srcap-210;Srcap-211;Srcap-202;Srcap-209;Srcap-212;Srcap-204;Srcap-201;Srcap-208;Srcap-207;Srcap-205;Srcap-206;Srcap-214,Gm42715;Srcap;Srcap;Srcap;Srcap;Srcap;Srcap;Srcap;Srcap;Srcap;Srcap;Srcap;Srcap;Srcap,0;0;0;0;0;3904;3715;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,2,100043597,ENSMUSG00000053877,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26792,cg18729512,-0.000000448,0.00000283,-0.158630078,0.874063619,loss,ns,0.0000125,0.0000048,2.601276076,0.009733254,pos,ns,0.001251652,0.001406595,0.88984505,0.374239117,pos,ns,0.42685082,0.0000121,0.0000484,0.249231695,0.803346616,pos,ns,0.080882629,Chd5,Chd5_Intron,4,152350229,152350278,152350229,152350230,50,+,CGGGCTGCAGCCGGAACCTGAGCATATGTAGATGAAGCTCCCTGTCAGAC,"Intron (Chd5-202/Chd5, intron 2 of 41)",4,152338651,152390194,51544,1,Chd5-202,11578,Chd5-202;Chd5-205;Chd5-201;Chd5-204,Chd5;Chd5;Chd5;Chd5,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,7,269610,ENSMUSG00000005045,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2253,cg18675617,-9.16E-08,0.00000733,-0.012487709,0.990044542,loss,ns,0.0000324,0.0000125,2.600888893,0.009744006,pos,ns,0.006936238,0.003648994,1.900862993,0.058247276,pos,ns,1.234724384,-0.000365215,0.000125489,-2.91034096,0.003871762,neg,ns,0.183405208,Meis1,Meis1_Intron,11,18872669,18872718,18872669,18872670,50,+,CGATAGATTAAAATGCAAATGAAAGGTAGAAAAAGAAACATTAACATGGC,"Intron (8430419K02Rik-202/8430419K02Rik-202, intron 1 of 2)",11,18880668,19012002,131335,2,Meis1-203,139284,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,88,17268,ENSMUSG00000020160,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
22231,cg04899093,-0.00000692,0.0000035,-1.980421743,0.048539952,loss,ns,-0.0000154,0.00000594,-2.600855147,0.009744944,neg,ns,0.002083309,0.001740169,1.197187719,0.232148063,pos,ns,0.634234935,0.0000162,0.0000598,0.269948151,0.787379755,pos,ns,0.931423641,Usp47,Usp47_Exon,7,112103998,112104047,112103998,112103999,50,-,CGGCAATCAAAAGAGGAATTAATTCCTCAGCTCAGGGAGCAATGTGGTTT,"Exon (Usp47-201/Usp47, exon 23 of 28)",7,112023504,112111384,87881,1,Usp47-201,80494,Usp47-201;Usp47-206;Usp47-202,Usp47;Usp47;Usp47,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,4,74996,ENSMUSG00000059263,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18232,cg00838278,0.00000463,0.00000282,1.64144853,0.101718429,gain,ns,-0.0000124,0.00000479,-2.600471871,0.009755598,neg,ns,0.000168462,0.00140248,0.120116972,0.904468298,pos,ns,0.043606651,0.0000183,0.0000482,0.380296336,0.703985891,pos,ns,0.942051853,Snx27,Snx27_threeUTR,3,94561814,94561863,94561814,94561815,50,+,CGATATGGGCACTGCTTGCTTTTCTGTGTAATCATAAAATGATTGTCCCA,3' UTR,3,94497544,94582716,85173,2,Snx27-201,20853,Snx27-201;Snx27-202;Snx27-207;Snx27-208;Snx27-205,Snx27;Snx27;Snx27;Snx27;Snx27,0;0;0;0;-19,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,2,76742,ENSMUSG00000028136,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2,cg06983110,0.00000241,0.00000212,1.139704345,0.255289335,gain,ns,-0.00000935,0.00000359,-2.60025462,0.009761642,neg,ns,0.001741475,0.001053187,1.653529258,0.099235442,pos,ns,1.00333319,-0.0000255,0.0000362,-0.704947337,0.481372312,neg,ns,0.963048536,Insr,Insr_Exon,8,3155961,3156010,3156009,3156010,50,+,ATCTCCAGGAAGGTTGGCCTCATCTTGGGGTTGAATTGCCAGCACATGCG,"Exon (Insr-201/Insr, exon 21 of 21)",8,3122061,3159555,37495,2,Insr-205,3545,Insr-205;Insr-201,Insr;Insr,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,16337,ENSMUSG00000005534,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4796,cg09011026,0.000158959,0.0000165,9.610802305,2.60E-19,gain,yes,-0.0000731,0.0000281,-2.600170451,0.009763985,neg,ns,-0.021193121,0.008231917,-2.574506018,0.010502175,neg,ns,1.97872076,0.00059198,0.000283095,2.091101938,0.037332797,pos,ns,0.284855845,Cstad,Cstad_Promoter,2,30594959,30595008,30595007,30595008,50,-,TAAAACGAAAAGATCAGTATCTGTCAGTCTGACAGCTGATTGGCTGCTCG,Promoter (<=1kb),2,30595040,30608943,13904,1,Cstad-201,-81,Cstad-201,Cstad,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,7,78617,ENSMUSG00000047363,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9482,cg13234083,0.0000788,0.0000126,6.262687789,1.26E-09,gain,yes,-0.0000556,0.0000214,-2.59995949,0.009769858,neg,ns,0.024830315,0.006262783,3.96474161,0.0000913,pos,ns,4.039623886,-0.000989327,0.000215377,-4.593475237,0.00000635,neg,ns,0.416362717,Gm49155,Gm49155_Intron,14,48854702,48854751,48854750,48854751,50,-,TTATCTTGCCTAACCAGATGGCCGACTTGGATCAATGCACACACACCACG,"Intron (Otx2os1-206/Otx2os1-206, intron 2 of 4)",14,48867329,48867800,472,2,Gm49155-201,13098,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,4,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16831,cg15803043,0.00000384,0.00000275,1.398910023,0.162839662,gain,ns,-0.0000121,0.00000467,-2.599615501,0.009779442,neg,ns,0.007726651,0.001367075,5.651957987,0.000000036,pos,ns,7.443992759,-0.000189037,0.000047,-4.020905285,0.0000729,neg,ns,0.938205266,Cltc,Cltc_Intron,11,86700418,86700467,86700466,86700467,50,-,TAGCACCATAAGAACTGGACACCTGGAGAAACATGAGGAAAGTCTCTTCG,"Intron (Cltc-202/Cltc, intron 30 of 31)",11,86694351,86757565,63215,2,Cltc-202,57098,Cltc-202;Cltc-201;Cltc-203;Cltc-205,Cltc;Cltc;Cltc;Cltc,0;0;0;1963,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,10,67300,ENSMUSG00000047126,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1868,cg17354293,-0.000012,0.0000078,-1.538338592,0.124985901,loss,ns,0.0000345,0.0000133,2.599561548,0.009780946,pos,ns,0.015990102,0.003883339,4.117616631,0.0000491,pos,ns,4.308534776,-0.000410661,0.000133548,-3.075017059,0.002292274,neg,ns,0.886960229,Chd1,Chd1_Exon,17,15739552,15739601,15739600,15739601,50,+,GAATATGGTTATGCAAGCCTTCACAAGGAGCTTGAGCCATTTCTGTTACG,"Exon (Chd1-201/Chd1, exon 15 of 36)",17,15704967,15772610,67644,1,Chd1-201,34585,Chd1-201;Chd1-204;Chd1-205,Chd1;Chd1;Chd1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,12648,ENSMUSG00000023852,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4819,cg12830810,-0.0000234,0.00000802,-2.925428993,0.00369373,loss,ns,0.0000354,0.0000136,2.598997484,0.009796682,pos,ns,0.019629325,0.003989332,4.920454742,0.0000014,pos,ns,5.852506327,-0.000645604,0.000137193,-4.705816034,0.00000382,neg,ns,0.822818188,Psme4,Psme4_Exon,11,30807768,30807817,30807816,30807817,50,-,ATTTTTAACAAATGCTTATGATATAGGACATGCTGTAATATGGATCACCG,"Exon (Psme4-201/Psme4, exon 8 of 47)",11,30771726,30880361,108636,1,Psme4-201,36042,Psme4-201;Psme4-206;Psme4-203,Psme4;Psme4;Psme4,0;0;-3720,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,103554,ENSMUSG00000040850,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23678,cg13660589,0.0000432,0.00000919,4.701344101,0.0000039,gain,ns,-0.0000406,0.0000156,-2.598448504,0.009812019,neg,ns,0.009408689,0.004575369,2.056378365,0.040582859,pos,ns,1.39165736,-0.0000382,0.000157347,-0.24262339,0.808457605,neg,ns,0.80269372,Ptbp2,Ptbp2_Exon,3,119726215,119726264,119726263,119726264,50,+,GAAGCCCTAATTTTAAAATAAAGCATATTTTACGAAACACACACAAGTCG,"Exon (Ptbp2-202/Ptbp2, exon 2 of 4)",3,119718742,119783388,64647,2,Ptbp2-201,57124,Ptbp2-201;Ptbp2-213;Ptbp2-208;Ptbp2-206;Ptbp2-204;Ptbp2-211;Ptbp2-202,Ptbp2;Ptbp2;Ptbp2;Ptbp2;Ptbp2;Ptbp2;Ptbp2,0;0;0;0;0;-1828;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,13,56195,ENSMUSG00000028134,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25742,cg13992970,-0.000000094,0.00000144,-0.065128319,0.948113811,loss,ns,-0.00000637,0.00000245,-2.598325491,0.009815459,neg,ns,-0.000825869,0.000718408,-1.149582747,0.251201884,neg,ns,0.599977108,0.00000941,0.0000247,0.380878226,0.703554488,pos,ns,0.970551858,Dennd1b,Dennd1b_Intron,1,139011331,139011380,139011331,139011332,50,-,CGAAGAAAAGAAATTGCTTTCTTTGTCAAGGTGTTTTCAATTCAATTCTC,"Intron (Dennd1b-209/Dennd1b, intron 2 of 9)",1,138963435,139063718,100284,1,Dennd1b-209,47896,Dennd1b-209;Dennd1b-202;Dennd1b-205;Dennd1b-208;Dennd1b-201,Dennd1b;Dennd1b;Dennd1b;Dennd1b;Dennd1b,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,5,329260,ENSMUSG00000056268,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25483,cg08777014,0.00000978,0.0000102,0.95953879,0.338035166,gain,ns,0.000045,0.0000173,2.598079603,0.009822337,pos,ns,-0.00240853,0.005074402,-0.474643057,0.635375599,neg,ns,0.196969468,0.000341246,0.000174508,1.955469451,0.051425817,pos,ns,0.756082414,Plp1,Plp1_Exon,X,136832208,136832257,136832208,136832209,50,+,CGACAAGGTGATCATCCTCAGGATTTTGTGGCAATAACAAGGGGTGGGGG,"Exon (Plp1-201/Plp1, exon 3 of 7)",20,136822671,136839733,17063,1,Plp1-201,9537,Plp1-201;Plp1-202;Plp1-203;Plp1-204,Plp1;Plp1;Plp1;Plp1,0;0;0;-994,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,8,18823,ENSMUSG00000031425,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
796,cg03469121,-0.00000306,0.000002,-1.531846656,0.126580114,loss,ns,-0.00000882,0.0000034,-2.59784669,0.009828857,neg,ns,0.001912002,0.000995095,1.921425552,0.055594777,pos,ns,1.25496601,-0.000204588,0.0000342,-5.978397149,6.19E-09,neg,yes,0.947818492,Pum2,Pum2_threeUTR,12,8748472,8748521,8748472,8748473,50,-,CGAAATCAGGGGAAAGGTTTTAGCCCTGAGTCAACACAAATTTGCCAGGT,3' UTR,12,8674134,8751454,77321,1,Pum2-203,74338,Pum2-203;Pum2-216;Pum2-201;Pum2-202;Pum2-207;Pum2-204;Pum2-210;Pum2-209;Pum2-206;Pum2-215,Pum2;Pum2;Pum2;Pum2;Pum2;Pum2;Pum2;Pum2;Pum2;Pum2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,TRUE,FALSE,threeUTR,7,11,80913,ENSMUSG00000020594,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20716,cg03592537,-0.000000247,0.000000723,-0.341696447,0.732810857,loss,ns,0.00000319,0.00000123,2.597390848,0.009841628,pos,ns,0.000135789,0.000359602,0.377609165,0.705979354,pos,ns,0.151207999,0.000000827,0.0000124,0.066906959,0.946698903,pos,ns,0.979132593,Cstf3,Cstf3_Exon,2,104608905,104608954,104608905,104608906,50,-,CGGAAAAGAAATTAGAAGAGAATCCATATGACCTTGATGCTTGGAGCATT,"Exon (Cstf3-201/Cstf3, exon 2 of 21)",2,104590523,104665429,74907,1,Cstf3-201,18382,Cstf3-201;Cstf3-202;Cstf3-206,Cstf3;Cstf3;Cstf3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,6,228410,ENSMUSG00000027176,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7076,cg08888677,0.0000339,0.00000406,8.353608042,2.24E-15,gain,yes,-0.0000179,0.0000069,-2.596971112,0.0098534,neg,ns,0.006051078,0.0020226,2.991732383,0.002996662,pos,ns,2.523362243,-0.000257635,0.0000696,-3.703943289,0.000251258,neg,ns,0.06890333,Zfpm2,Zfpm2_Intron,15,40825412,40825461,40825412,40825413,50,-,CGACTTAAAGGAGCCTTATCTCGGGGCTCTTCGGCTTCATTTCATGCTTG,"Intron (Zfpm2-202/Zfpm2, intron 3 of 3)",15,40655035,40872723,217689,1,Zfpm2-202,170377,Zfpm2-202;Zfpm2-201;Zfpm2-203,Zfpm2;Zfpm2;Zfpm2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,41,22762,ENSMUSG00000022306,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20537,cg22251756,-0.00007,0.0000102,-6.858145271,3.79E-11,loss,yes,-0.000045,0.0000173,-2.596800363,0.009858193,neg,ns,-0.005845723,0.005077953,-1.15119673,0.250538441,neg,ns,0.601125629,-0.000207359,0.00017463,-1.187414298,0.235973287,neg,ns,0.601201381,Fam181a,Fam181a_Intron,12,103314110,103314159,103314158,103314159,50,-,TGCTGATGGCAATTCTATGGGCTTTGTCCACCTCTTTCTCCATCATGACG,"Intron (Fam181a-203/Fam181a, intron 1 of 1)",12,103310975,103317065,6091,1,Fam181a-203,3135,Fam181a-203;Fam181a-202;Fam181a-201,Fam181a;Fam181a;Fam181a,0;-794;-800,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,9,100504156,ENSMUSG00000096753,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24373,cg05297127,-0.0000145,0.00000366,-3.958010147,0.0000938,loss,ns,-0.0000161,0.00000622,-2.596646348,0.009862517,neg,ns,0.000722429,0.001821047,0.396710817,0.691853679,pos,ns,0.159985745,-0.00022007,0.0000626,-3.514051669,0.000507065,neg,ns,0.892062758,Ing4,Ing4_Exon,6,125047229,125047278,125047229,125047230,50,-,CGGCTGGACACAGACCTGGCCCGTTTTGAGGCTGATCTCAAGGAGAAACA,"Exon (Ing4-205/Ing4, exon 4 of 8)",6,125039760,125049002,9243,1,Ing4-205,7469,Acrbp-205;Acrbp-204;Acrbp-202;Acrbp-201;Acrbp-203;Ing4-205;Ing4-203;Ing4-201;Ing4-208;Ing4-207;Ing4-202;Ing4-209;Ing4-204;Ing4-206,Acrbp;Acrbp;Acrbp;Acrbp;Acrbp;Ing4;Ing4;Ing4;Ing4;Ing4;Ing4;Ing4;Ing4;Ing4,-2411;-2669;-2681;-2689;-4576;0;7393;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,5,28019,ENSMUSG00000030330,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
874,cg19070715,0.0000225,0.00000927,2.426533796,0.015813801,gain,ns,-0.0000409,0.0000157,-2.596290365,0.00987252,neg,ns,0.005006135,0.004611516,1.085572429,0.278511654,pos,ns,0.555156627,-0.000210899,0.00015859,-1.329842628,0.184547765,neg,ns,0.551972381,Clvs1,Clvs1_Intron,4,9270468,9270517,9270468,9270469,50,+,CGAGATTTTTGTGTGCTTTCTCAGTAATCAGGTGATAACACCATTTTCCT,"Intron (Clvs1-208/Clvs1, intron 1 of 1)",4,9269293,9282272,12980,1,Clvs1-208,1175,Clvs1-208;Clvs1-203;Clvs1-201;Clvs1-207;Clvs1-206;Clvs1-202,Clvs1;Clvs1;Clvs1;Clvs1;Clvs1;Clvs1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,2,74438,ENSMUSG00000041216,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10416,cg19328475,0.000109843,0.0000137,8.039602322,1.92E-14,gain,yes,-0.0000603,0.0000232,-2.596189457,0.009875357,neg,ns,0.016597971,0.006800115,2.440836797,0.015212721,pos,ns,1.817793088,-0.000434506,0.000233855,-1.858013593,0.064114975,neg,ns,0.628560983,Prdm6,Prdm6_Intron,18,53468821,53468870,53468821,53468822,50,+,CGACTGTTTATTCAAGGTGATAAAATGGTCCATCAGCAGTAATCTCCATC,"Intron (Prdm6-201/Prdm6, intron 1 of 6)",18,53464516,53575857,111342,1,Prdm6-201,4305,Prdm6-205;Prdm6-201;Prdm6-203,Prdm6;Prdm6;Prdm6,5238;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,16,225518,ENSMUSG00000069378,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
11641,cg04903269,-0.000053,0.00000984,-5.384628821,0.000000144,loss,yes,0.0000434,0.0000167,2.596084213,0.009878317,pos,ns,-0.007066357,0.004898394,-1.442586422,0.150146606,neg,ns,0.823484479,0.0000838,0.000168455,0.497684943,0.619058962,pos,ns,0.666584991,Celf6,Celf6_Intron,9,59589188,59589237,59589236,59589237,50,+,TACTGGGTAGCACTTGTGGCTATGGTAACAGGAAGCTGCCTGTTGTCTCG,"Intron (Celf6-207/Celf6, intron 2 of 10)",9,59577917,59607292,29376,1,Celf6-207,11271,Celf6-207;Celf6-203;Celf6-205;Celf6-201;Celf6-204;Celf6-202,Celf6;Celf6;Celf6;Celf6;Celf6;Celf6,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,8,76183,ENSMUSG00000032297,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
27509,cg11767291,0.0000291,0.0000115,2.522069315,0.012167313,gain,ns,0.0000509,0.0000196,2.595993929,0.009880856,pos,ns,0.005364698,0.005743128,0.934107303,0.35097556,pos,ns,0.454723125,0.000308532,0.000197506,1.562143273,0.119274487,pos,ns,0.744004071,Pbx1,Pbx1_Intergenic_upstream,1,168676996,168677045,168676996,168676997,50,-,CGTGTGGTTCAACGATGACAGATTGAGAAGAACTGTCCCCCTCTCGACAG,Distal Intergenic,1,168119364,168432270,312907,2,Pbx1-208,-244775,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,17,84,18514,ENSMUSG00000052534,conserved gene and region,1,168676888,168677048,161,*,161,10,0.527950311,0.897435897,0.062111801,0.00000521,CpGisland,TRUE,U15,NS
11048,cg26486740,0.0000128,0.0000087,1.472002845,0.142034569,gain,ns,-0.0000384,0.0000148,-2.595639564,0.00989083,neg,ns,-0.002009633,0.004329141,-0.464210582,0.642822703,neg,ns,0.191908793,-0.000165795,0.000148879,-1.113626482,0.266302177,neg,ns,0.819726788,Gm13518,Gm13518_Intergenic_downstream,2,56456687,56456736,56456687,56456688,50,+,CGGAGACACACTCATGCATGGTGCTTTTTAAATTCTTATTATGTGTGAGG,Distal Intergenic,2,56039853,56040085,233,1,Gm13518-201,416834,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,37,37,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1293,cg13941670,-0.0000767,0.000022,-3.487778604,0.000557488,loss,ns,0.000097,0.0000374,2.59531229,0.009900049,pos,ns,0.035492369,0.010944569,3.242920511,0.001312073,pos,ns,2.882042073,-0.000790863,0.000376383,-2.1012194,0.036428754,neg,ns,0.71652208,Fezf2,Fezf2_Intergenic_downstream,14,12324993,12325042,12325041,12325042,50,+,TGATGGAAAATATATACCACCCAGCTAAACACTCTCTTGATTTAGAATCG,Distal Intergenic,14,12342094,12345844,3751,2,Fezf2-203,20802,Gm49355-201,Gm49355,41017,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,21,45,54713,ENSMUSG00000021743,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5059,cg19255049,0.0000121,0.00000247,4.887017044,0.00000165,gain,yes,-0.0000109,0.0000042,-2.595255239,0.009901657,neg,ns,-0.000115778,0.001229343,-0.094178727,0.925028025,neg,ns,0.033845109,-0.0000426,0.0000423,-1.007231036,0.314609299,neg,ns,0.942553804,Sgms1,Sgms1_threeUTR,19,32124427,32124476,32124427,32124428,50,-,CGAGGTACAATTCCTTGGACATTCTTTTCAAAGTACTGAAATGGCCTGTA,3' UTR,19,32122727,32388512,265786,2,Sgms1-201,264036,Sgms1-201;Sgms1-212;Sgms1-209;Sgms1-215;Sgms1-214;Sgms1-206,Sgms1;Sgms1;Sgms1;Sgms1;Sgms1;Sgms1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,8,208449,ENSMUSG00000040451,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2479,cg02794453,-0.0000398,0.0000122,-3.266200356,0.001212136,loss,ns,0.0000538,0.0000207,2.595035191,0.009907861,pos,ns,-0.004615158,0.006069446,-0.760391947,0.447598271,neg,ns,0.3491116,-0.000395305,0.000208728,-1.8938778,0.059172047,neg,ns,0.804177239,Pkhd1,Pkhd1_Intergenic_downstream,1,19891328,19891377,19891328,19891329,50,+,CGAGGTCTATGTCTGTCACTAAAATTGACAACTGCCTATGGCTCTGCACA,Distal Intergenic,1,20374722,20409448,34727,2,Pkhd1-203,518071,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,25,241035,ENSMUSG00000043760,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20021,cg07698729,-0.00000695,0.00000223,-3.119940309,0.001978989,loss,ns,-0.00000982,0.00000378,-2.594875951,0.009912352,neg,ns,-0.001123598,0.001108382,-1.0137282,0.311503011,neg,ns,0.506537751,-0.0000277,0.0000381,-0.72568705,0.468578127,neg,ns,0.943140659,Zfp740,Zfp740_Exon,15,102212584,102212633,102212632,102212633,50,+,CTTTCTTCTCAGTGTTTTTCTCGGACAGATCGATTACTCAGACACAAACG,"Exon (Zfp740-201/Zfp740, exon 8 of 8)",15,102203648,102215605,11958,1,Zfp740-201,8936,Itgb7-203;Itgb7-201;Itgb7-204;Zfp740-201;Zfp740-202;Zfp740-209;Zfp740-208;Zfp740-212;Zfp740-203;Zfp740-205;Zfp740-207;Zfp740-210;Zfp740-206;Zfp740-204,Itgb7;Itgb7;Itgb7;Zfp740;Zfp740;Zfp740;Zfp740;Zfp740;Zfp740;Zfp740;Zfp740;Zfp740;Zfp740;Zfp740,4440;19311;4017;0;0;0;0;0;0;7838;7804;6025;4966;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,5,68744,ENSMUSG00000046897,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26147,cg22409694,0.00000395,0.00000468,0.844672793,0.398944953,gain,ns,-0.0000206,0.00000795,-2.594627378,0.009919367,neg,ns,-0.006061015,0.00232793,-2.603607471,0.009668737,neg,ns,2.014630251,0.00018196,0.0000801,2.272871202,0.023718132,pos,ns,0.891774516,Lmo4,Lmo4_Intron,3,144196044,144196093,144196044,144196045,50,-,CGACAGGGAGAGTAGTAAAACTGCCCCTTAAGATGGCTTTTAATAGGAAG,"Intron (Lmo4-203/Lmo4, intron 2 of 4)",3,144188530,144202396,13867,2,Lmo4-203,6303,Lmo4-203;Lmo4-201;Lmo4-202;Lmo4-207;Lmo4-206;Lmo4-208;Lmo4-205,Lmo4;Lmo4;Lmo4;Lmo4;Lmo4;Lmo4;Lmo4,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,54,16911,ENSMUSG00000028266,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27434,cg03077244,-0.000007,0.00000502,-1.395816323,0.163768687,loss,ns,-0.0000221,0.00000852,-2.594417971,0.009925281,neg,ns,0.002207981,0.002497266,0.8841596,0.377295269,pos,ns,0.423318641,-0.000068,0.0000859,-0.791692611,0.429145283,neg,ns,0.807332657,Pbx1,Pbx1_threeUTR,1,168158718,168158767,168158718,168158719,50,-,CGATTGCTGGGAGATCAGTTGGAGGTATCAGAGTGAACACTGCCAGGGCC,3' UTR,1,168119364,168432270,312907,2,Pbx1-208,273503,Pbx1-208;Pbx1-205;Pbx1-206;Pbx1-203;Pbx1-201,Pbx1;Pbx1;Pbx1;Pbx1;Pbx1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,84,18514,ENSMUSG00000052534,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1671,cg05265959,-0.00000765,0.00000423,-1.809359458,0.071363695,loss,ns,0.0000186,0.00000718,2.594364823,0.009926782,pos,ns,0.003645542,0.002103031,1.733470881,0.08400631,pos,ns,1.075688089,-0.0000313,0.0000723,-0.433310779,0.665090357,neg,ns,0.946550395,Arid4b,Arid4b_Exon,13,14170129,14170178,14170129,14170130,50,+,CGAAGGTGGAGAGGTCCTTTACTTGGTGCATTACTGCGGATGGAATGTGA,"Exon (Arid4b-203/Arid4b, exon 17 of 24)",13,14063785,14199367,135583,1,Arid4b-204,106344,Arid4b-205;Arid4b-204;Arid4b-203;Arid4b-201;Arid4b-202;Arid4b-207,Arid4b;Arid4b;Arid4b;Arid4b;Arid4b;Arid4b,106345;0;0;0;106330;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,94246,ENSMUSG00000039219,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18992,cg01401198,0.00000321,0.000003,1.068622051,0.286071419,gain,ns,-0.0000132,0.0000051,-2.594361582,0.009926873,neg,ns,-0.003739842,0.001493137,-2.504687351,0.012769029,neg,ns,1.89384213,0.0000831,0.0000513,1.6176722,0.106750279,pos,ns,0.931045809,Asb8,Asb8_Exon,15,98136163,98136212,98136211,98136212,50,-,AAGGATGCTGACACTCTCAAGATTTCCCTTCATGGCAGCCCAGCTGAGCG,"Exon (Asb8-204/Asb8, exon 4 of 4)",15,98134637,98165625,30989,2,Asb8-204,29413,Asb8-204;Asb8-201;Asb8-202;Asb8-203;Pfkm-202;Pfkm-205;Pfkm-201,Asb8;Asb8;Asb8;Asb8;Pfkm;Pfkm;Pfkm,0;0;0;0;43574;43519;27697,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,78541,ENSMUSG00000048175,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20609,cg07403155,-0.00000565,0.00000166,-3.399231632,0.000764124,loss,ns,0.00000733,0.00000283,2.594302515,0.009928542,pos,ns,0.001966488,0.000827676,2.375915336,0.018112959,pos,ns,1.742010587,-0.0000694,0.0000285,-2.436960996,0.015373571,neg,ns,0.049981226,Rsbn1,Rsbn1_Exon,3,103914986,103915035,103914986,103914987,50,-,CGGCCGGGCCCAAGCATAAGGGCCACAAGGAGCGGCACAAGCACCATCAC,Promoter (<=1kb),3,103914120,103966613,52494,1,Rsbn1-201,866,Ptpn22-204;Ptpn22-201;Ptpn22-202;Rsbn1-201;Rsbn1-202;Rsbn1-203,Ptpn22;Ptpn22;Ptpn22;Rsbn1;Rsbn1;Rsbn1,55191;54709;12947;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,16,229675,ENSMUSG00000044098,conserved gene and region,3,103914092,103915120,1029,*,1029,106,0.664723032,0.937553185,0.103012634,8.89E-82,CpGisland,TRUE,U1,Pr-A
5343,cg19901381,0.0000316,0.0000184,1.72145608,0.086165718,gain,ns,0.0000809,0.0000312,2.593215338,0.009959301,pos,ns,0.025272302,0.009139378,2.765210174,0.006029519,pos,ns,2.219717318,-0.000783632,0.000314302,-2.493242288,0.013179536,neg,ns,0.400979562,Fam53a,Fam53a_Intergenic_downstream,5,33540299,33540348,33540299,33540300,50,-,CGGGGTAATATGTGCTCATTACAAAAGCAAAACAGATCTGGCATGAATAA,Distal Intergenic,5,33600356,33628912,28557,2,Fam53a-203,88613,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,13,13,74504,ENSMUSG00000037339,conserved gene but different region,5,33540258,33540439,182,*,182,14,0.5,1.230917874,0.076923077,1.99E-09,CpGisland,TRUE,U13,Hc-P
12682,cg09549756,-0.00000821,0.00000833,-0.985202784,0.325292776,loss,ns,0.0000367,0.0000141,2.592845417,0.009969787,pos,ns,0.011390887,0.004145134,2.748014116,0.006346922,pos,ns,2.197436826,-0.000350572,0.000142551,-2.459275111,0.014467732,neg,ns,0.871552532,Unc80,Unc80_Exon,1,66606484,66606533,66606484,66606485,50,+,CGCCTGCTCCAGATTAAAGGAACCCGCAGTTTCCAGGTGAAGAAGGGGGG,"Exon (Unc80-201/Unc80, exon 27 of 65)",1,66468367,66699148,230782,1,Unc80-201,138117,Unc80-201;Unc80-206,Unc80;Unc80,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,9,329178,ENSMUSG00000055567,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6228,cg03599633,-0.0000293,0.00000691,-4.239894673,0.0000295,loss,ns,0.0000304,0.0000117,2.59276322,0.009972118,pos,ns,-0.001542457,0.003437601,-0.448701418,0.653960543,neg,ns,0.184448454,0.000297397,0.000118219,2.515652718,0.012386434,pos,ns,0.758992567,Cnnm4,Cnnm4_Exon,1,36472512,36472561,36472560,36472561,50,+,ATTGGCATTGTCATCTTTGGGGAGATCCTACCTCAGGCCCTGTGCTCCCG,Promoter (<=1kb),1,36471620,36508764,37145,1,Cnnm4-201,892,Cnnm4-201;Cnnm4-202,Cnnm4;Cnnm4,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,94220,ENSMUSG00000037408,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U4,Pr-F
9127,cg24163300,-0.0000227,0.0000134,-1.69141544,0.091762457,loss,ns,0.0000591,0.0000228,2.59262369,0.009976077,pos,ns,0.004086116,0.00668166,0.611542044,0.541288996,pos,ns,0.266570802,-0.0000564,0.000229782,-0.245345475,0.806351284,neg,ns,0.737342059,Gm14609,Gm14609_Intergenic_downstream,X,47061038,47061087,47061038,47061039,50,+,CGATTTCGCTCCCAGCTGTTCAGTCTAATCCATTTATGGTTGTTTATGGC,Distal Intergenic,20,47380433,47381334,902,2,Gm14609-201,320247,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,100417173,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18371,cg13394114,-0.0000105,0.0000166,-0.635174321,0.525783274,loss,ns,0.0000729,0.0000281,2.592372586,0.009983204,pos,ns,-0.004357808,0.008238474,-0.528958201,0.597212976,neg,ns,0.223870764,0.000313461,0.00028332,1.106383925,0.269418205,pos,ns,0.38370086,Otp,Otp_Intron,13,94880172,94880221,94880172,94880173,50,-,CGTGTCCCCCAGAATGGCCCTGTCACCTGCCACATCTTAATAGGGGGACA,"Intron (Otp-201/Otp, intron 2 of 2)",13,94875602,94885130,9529,1,Otp-201,4570,Otp-201;Otp-202,Otp;Otp,0;-2379,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,34,18420,ENSMUSG00000021685,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
1622,cg10342649,-0.00000567,0.00000646,-0.877443262,0.380925419,loss,ns,0.0000285,0.000011,2.592259026,0.009986429,pos,ns,0.00429225,0.003216594,1.334408527,0.183049339,pos,ns,0.737431835,0.0000254,0.000110618,0.229274946,0.818806417,pos,ns,0.863714439,Zfp521,Zfp521_Intron,18,13896608,13896657,13896608,13896609,50,+,CGGAGAGAACCCCCTAAGGGTCCCAAGTTCAAATTTCTGAAATGTAGGCA,"Intron (Zfp521-201/Zfp521, intron 3 of 7)",18,13687013,13972787,285775,2,Zfp521-201,76130,Zfp521-201;Zfp521-204;Zfp521-203;Zfp521-202,Zfp521;Zfp521;Zfp521;Zfp521,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,81,225207,ENSMUSG00000024420,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4252,cg17707748,0.000107366,0.0000115,9.325634148,2.16E-18,gain,yes,-0.0000507,0.0000196,-2.592257035,0.009986485,neg,ns,0.018603553,0.005730162,3.246601641,0.001295778,pos,ns,2.887469513,-0.001514873,0.00019706,-7.687376568,2.00E-13,neg,yes,0.587361693,Anks1,Anks1_Exon,17,27986253,27986302,27986253,27986254,50,-,CGGAGATGGGCAGTGCTTTGCATGAGGCTGCTTTGTTTGGCAAGACCGAT,"Exon (Anks1-203/Anks1, exon 6 of 25)",17,27909306,28062775,153470,1,Anks1-203,76947,Anks1-203;Anks1-202;Anks1-211;Anks1-201,Anks1;Anks1;Anks1;Anks1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,6,224650,ENSMUSG00000024219,conserved gene and region,17,27986135,27986254,120,*,120,10,0.6,0.987654321,0.083333333,0.000000362,CpGisland,TRUE,U10,Tr-S
13036,cg14319933,-0.00002,0.0000107,-1.869580227,0.062484684,loss,ns,0.000047,0.0000182,2.590963631,0.01002328,pos,ns,-0.00281082,0.005319793,-0.528370229,0.59762044,neg,ns,0.223574557,0.000678371,0.000182947,3.708012746,0.000247425,pos,ns,0.39949162,Pced1c-ps,Pced1c-ps_Intergenic_upstream,1,69331791,69331840,69331791,69331792,50,+,CGGTGTAATGTGTCACAAAACAGACAATGTAATTATCTCAGCAGCCTGTT,Distal Intergenic,1,69377321,69378071,751,1,Pced1c-ps-201,-45481,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,2,241084,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
8621,cg11850995,-0.00000352,0.00000236,-1.490015333,0.13723692,loss,ns,0.0000104,0.00000402,2.590619529,0.01003309,pos,ns,0.002679894,0.00117707,2.276749185,0.023482523,pos,ns,1.629255243,-0.0000729,0.0000405,-1.801278574,0.072630627,neg,ns,0.954202024,Gm13475,Gm13475_Intergenic_downstream,2,45459247,45459296,45459247,45459248,50,+,CGTAAAACATTCATGGAAGGCAGCTCTGCAGTTTTATAGAAAAACAACGT,Distal Intergenic,2,45329232,45329465,234,1,Gm13475-201,130015,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,21,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2508,cg27134912,-0.00000484,0.00000172,-2.813510542,0.005213377,loss,ns,0.00000758,0.00000293,2.59008312,0.010048398,pos,ns,0.000103617,0.000856949,0.12091406,0.903837439,pos,ns,0.043909673,0.00000637,0.0000295,0.216269326,0.828920059,pos,ns,0.957322295,Pkhd1,Pkhd1_Intron,1,20106993,20107042,20107041,20107042,50,-,TCCCCCTTCCCTGAAATGAAAGTGATCACAATACATCATAGCATTGTGCG,"Intron (Pkhd1-201/Pkhd1, intron 61 of 66)",1,20057779,20618064,560286,2,Pkhd1-201,511022,Pkhd1-201,Pkhd1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,25,241035,ENSMUSG00000043760,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23508,cg07375635,-0.00000928,0.00000816,-1.137475675,0.256217894,loss,ns,-0.0000359,0.0000139,-2.589508711,0.010064815,neg,ns,0.014113525,0.004061769,3.474723411,0.000584254,pos,ns,3.233398092,-0.00116888,0.000139684,-8.368038625,2.03E-15,neg,yes,0.816997196,Med13l,Med13l_Exon,5,118730913,118730962,118730961,118730962,50,+,CAGAGGATGGATTTGGTACCAAGGATGTCACTACACCAGGTCATTCCACG,"Exon (Med13l-201/Med13l, exon 12 of 31)",5,118560719,118765438,204720,1,Med13l-201,170194,Med13l-201;Med13l-202,Med13l;Med13l,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,16,76199,ENSMUSG00000018076,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24343,cg18977436,-0.0000155,0.0000248,-0.625688469,0.53197966,loss,ns,0.000109242,0.0000422,2.588944364,0.010080967,pos,ns,0.012192452,0.012361845,0.986297111,0.324756504,pos,ns,0.488442142,-0.000274788,0.000425123,-0.646373503,0.518515731,neg,ns,0.353017657,Fgf14,Fgf14_fiveUTR,14,124676717,124676766,124676765,124676766,50,-,TAGGAAAAACGATAATATTCCGGATCTTCTCCCAGTTTTTTCCCCTCACG,Promoter (<=1kb),14,123977907,124677127,699221,2,Fgf14-202,361,Fgf14-202,Fgf14,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,9,14169,ENSMUSG00000025551,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
18788,cg09427430,-0.00000258,0.00000207,-1.247587214,0.213123874,loss,ns,0.00000909,0.00000351,2.588878998,0.010082839,pos,ns,0.003792574,0.00102829,3.688235149,0.000266584,pos,ns,3.574165514,-0.000112416,0.0000354,-3.178942176,0.00162742,neg,ns,0.930352819,Socs7,Socs7_Exon,11,97377027,97377076,97377075,97377076,50,-,TCCTTGTGGCTCCGATGGGGTCTTCCTTGCAGTCTTTCCCCCTACCTCCG,"Exon (Socs7-203/Socs7, exon 4 of 10)",11,97362435,97398542,36108,1,Socs7-203,14592,Socs7-203;Socs7-201;Socs7-202,Socs7;Socs7;Socs7,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,192157,ENSMUSG00000038485,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24518,cg08599419,0.00000912,0.00000741,1.231251795,0.21916197,gain,ns,-0.0000326,0.0000126,-2.588590619,0.010091103,neg,ns,-0.0002619,0.003686945,-0.071034302,0.943416259,neg,ns,0.025296643,-0.000313424,0.000126794,-2.471917393,0.013975788,neg,ns,0.864738886,Ncdn,Ncdn_threeUTR,4,126743775,126743824,126743823,126743824,50,-,TTATTGAGTGTCCACATGTGCACAGCTTTGAACTTGGCGATCACAGAACG,3' UTR,4,126743750,126753409,9660,2,Ncdn-201,9585,Ncdn-201;Ncdn-202;Ncdn-203,Ncdn;Ncdn;Ncdn,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,3,26562,ENSMUSG00000028833,conserved gene and region,4,126743812,126743914,103,*,103,9,0.650485437,0.882857143,0.087378641,0.00000118,CpGisland,TRUE,U11,Tr-P
3455,cg22377555,-0.00000745,0.00000546,-1.366305355,0.172833386,loss,ns,0.000024,0.00000927,2.588499851,0.010093706,pos,ns,0.009055201,0.002715068,3.335164707,0.000956026,pos,ns,3.019530126,-0.000256112,0.0000934,-2.742951905,0.006443197,neg,ns,0.90814018,Bcl11a,Bcl11a_Intron,11,24095823,24095872,24095871,24095872,50,-,ATTACCTAGTTGTAAATTCTAATGACCATTAGGTCCTTCCAGTAATTGCG,"Intron (Bcl11a-201/Bcl11a, intron 2 of 4)",11,24078056,24173194,95139,1,Bcl11a-201,17767,Bcl11a-201;Bcl11a-203;Bcl11a-205;Bcl11a-202;Bcl11a-204,Bcl11a;Bcl11a;Bcl11a;Bcl11a;Bcl11a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,98,14025,ENSMUSG00000000861,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4303,cg14935662,0.000158496,0.0000111,14.24250444,9.29E-36,gain,yes,-0.0000489,0.0000189,-2.588164166,0.010103335,neg,ns,-0.010447056,0.005538718,-1.88618666,0.06020441,neg,ns,1.220371696,0.00017236,0.000190476,0.904892862,0.366224857,pos,ns,0.343462237,Zfp800,Zfp800_fiveUTR,6,28260733,28260782,28260733,28260734,50,+,CGTGATGATGGTGGTCAGTCTGACAGTATTTGTCCCTTAAAGGCATTTTC,5' UTR,6,28239927,28261911,21985,2,Zfp800-202,1129,Zfp800-202;Zfp800-201;Zfp800-203;Zfp800-204;Zfp800-205,Zfp800;Zfp800;Zfp800;Zfp800;Zfp800,0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,10,627049,ENSMUSG00000039841,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
773,cg18034053,0.000023,0.00000418,5.515054845,7.36E-08,gain,yes,-0.0000184,0.0000071,-2.587586813,0.010119917,neg,ns,0.008858731,0.00208012,4.258760198,0.0000273,pos,ns,4.564041798,-0.000221956,0.0000715,-3.102749866,0.002093887,neg,ns,0.907449112,Usp7,Usp7_Intron,16,8705510,8705559,8705510,8705511,50,-,CGTAATGGTCCACACCAAGAGATTAATGAGGTTGAGCCTGTCAACAGGAT,"Intron (Usp7-207/Usp7, intron 9 of 31)",16,8689595,8792308,102714,2,Usp7-207,86749,Usp7-207;Usp7-206;Usp7-208;Usp7-210;Usp7-212;Usp7-201;Usp7-202;Usp7-209;Usp7-204;Usp7-205,Usp7;Usp7;Usp7;Usp7;Usp7;Usp7;Usp7;Usp7;Usp7;Usp7,0;0;0;0;0;-1729;0;-201;0;1269,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,10,252870,ENSMUSG00000022710,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3965,cg08031258,0.0000188,0.000012,1.56696443,0.118143176,gain,ns,0.0000526,0.0000203,2.587551826,0.010120922,pos,ns,0.000449112,0.005956397,0.075400005,0.939945089,pos,ns,0.026897517,0.000277682,0.00020484,1.355605323,0.176211544,pos,ns,0.800171652,Gm7847,Gm7847_Intergenic_upstream,18,25999414,25999463,25999414,25999415,50,-,CGCTGGAAAATGGGTTTGACTACCAATTTTCCATTACAGCTGTTTTGTAA,Distal Intergenic,18,25823581,25824357,777,2,Gm7847-201,-175106,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,22,665916,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4361,cg22728007,-0.00000453,0.00000994,-0.455945299,0.648748546,loss,ns,-0.0000437,0.0000169,-2.58751283,0.010122043,neg,ns,0.011499839,0.004945514,2.325307241,0.020700731,pos,ns,1.684014328,-0.00050038,0.000170076,-2.942099862,0.003505741,neg,ns,0.771120783,Glis3,Glis3_Intron,19,28517844,28517893,28517844,28517845,50,+,CGACAAGCACTGCTGAATCACTTGAGATGGGCCAAAAGGTCAGGGCCCTG,"Intron (Glis3-209/Glis3, intron 4 of 10)",19,28258851,28680077,421227,2,Glis3-209,162184,Glis3-209;Glis3-201;Glis3-207;Glis3-202,Glis3;Glis3;Glis3;Glis3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,8,226075,ENSMUSG00000052942,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4051,cg25054515,-0.0000065,0.00000293,-2.220261951,0.027123891,loss,ns,0.0000129,0.00000497,2.587504808,0.010122274,pos,ns,0.00021147,0.001457256,0.145115286,0.884714153,pos,ns,0.053197025,-0.0000216,0.0000501,-0.431013657,0.666757988,neg,ns,0.954820525,Gm45647,Gm45647_Intergenic_upstream,8,26661183,26661232,26661231,26661232,50,-,GAGCGTTAACCATCCTTGGCAATGGGCTGAGTCGTTTAATGTGGGTAACG,Distal Intergenic,8,26780315,26780509,195,1,Gm45647-201,-119132,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,46,62,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9782,cg12221599,-0.00000307,0.00000456,-0.673770168,0.500959495,loss,ns,-0.00002,0.00000774,-2.587119264,0.010133362,neg,ns,-0.003834053,0.002268274,-1.690295136,0.091976725,neg,ns,1.03632206,-0.000102373,0.000078,-1.312381046,0.190362451,neg,ns,0.9062786,Trps1,Trps1_Exon,15,50846257,50846306,50846305,50846306,50,-,TCCACAGATATTGCATTTAAAGTCCTGAAGCTCTGGAGACAGAGGTGCCG,"Exon (Trps1-202/Trps1, exon 2 of 6)",15,50654752,50889691,234940,2,Trps1-202,43385,Trps1-202;Trps1-206;Trps1-204;Trps1-205;Trps1-207;Trps1-201;Trps1-208,Trps1;Trps1;Trps1;Trps1;Trps1;Trps1;Trps1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,36,83925,ENSMUSG00000038679,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3788,cg11146889,-0.0000164,0.00000793,-2.072695951,0.039026709,loss,ns,0.0000349,0.0000135,2.586825455,0.01014182,pos,ns,0.012921248,0.003947911,3.272932755,0.00118458,pos,ns,2.926435601,-0.000491918,0.000135768,-3.623212345,0.000339893,neg,ns,0.843690106,Nlgn1,Nlgn1_Exon,3,25434356,25434405,25434404,25434405,50,+,TAAAGTTGGTCTTTCTGGGAATATCTGGTCCATGCTACTTCTTCAAAACG,"Exon (Nlgn1-205/Nlgn1, exon 8 of 8)",3,25426215,26332460,906246,2,Nlgn1-205,898055,Nlgn1-205;Nlgn1-201;Nlgn1-202;Nlgn1-203,Nlgn1;Nlgn1;Nlgn1;Nlgn1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,7,192167,ENSMUSG00000063887,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24535,cg05361761,0.000018,0.00000786,2.291979565,0.022576831,gain,ns,0.0000345,0.0000134,2.586361332,0.010155193,pos,ns,0.016161169,0.003911873,4.131312134,0.0000464,pos,ns,4.333024103,-0.000331661,0.000134529,-2.46534964,0.014229473,neg,ns,0.249997269,Doc2a,Doc2a_Exon,7,126848603,126848652,126848603,126848604,50,+,CGATCGCATGACCATCAACATCCAGGAGCACATGGCCATCAACGTGTGCC,"Exon (Doc2a-204/Doc2a, exon 2 of 4)",7,126847416,126849525,2110,1,Doc2a-204,1187,Doc2a-204;Doc2a-201;Doc2a-207;Doc2a-209;Doc2a-206;Doc2a-205;Doc2a-203;Doc2a-202;Doc2a-208;Ino80e-211;Ino80e-201;Ino80e-202;Ino80e-203;Ino80e-204;Ino80e-214;Ino80e-208;Ino80e-213;Ino80e-215;Ino80e-212,Doc2a;Doc2a;Doc2a;Doc2a;Doc2a;Doc2a;Doc2a;Doc2a;Doc2a;Ino80e;Ino80e;Ino80e;Ino80e;Ino80e;Ino80e;Ino80e;Ino80e;Ino80e;Ino80e,0;0;0;0;0;0;0;0;-145;12619;12811;13034;13186;13725;13208;13080;9078;13709;13131,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,13446,ENSMUSG00000052301,conserved gene and region,7,126848542,126848748,207,*,207,15,0.676328502,0.634839501,0.072463768,1.06E-09,CpGisland,TRUE,U13,Hc-P
24013,cg17499276,0.0000934,0.00000772,12.10180341,7.15E-28,gain,yes,0.0000339,0.0000131,2.585206292,0.010188542,pos,ns,0.007735875,0.003841022,2.014014737,0.04487158,pos,ns,1.348028634,-0.000247845,0.000132092,-1.876299528,0.061553537,neg,ns,0.067250562,Cux2,Cux2_Intron,5,121948343,121948392,121948391,121948392,50,+,CTTTGTCTAAAAATAATCAGACATTCTGTGCACCACTGTTTGTTATAACG,"Intron (Cux2-202/Cux2, intron 2 of 22)",5,121856366,122049851,193486,2,Cux2-202,101459,Cux2-202;Cux2-201;Cux2-207;Cux2-205;Cux2-203,Cux2;Cux2;Cux2;Cux2;Cux2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,21,13048,ENSMUSG00000042589,conserved gene and region,5,121948371,121948694,324,*,324,26,0.552469136,1.057228916,0.080246914,1.44E-17,CpGisland,TRUE,NA,NRS
25177,cg25130381,0.00000442,0.00000727,0.6081512,0.543532494,gain,ns,-0.0000319,0.0000123,-2.585081264,0.010192157,neg,ns,-0.007544153,0.003616475,-2.086051533,0.037791209,neg,ns,1.42260921,-0.000284067,0.00012437,-2.284043842,0.023044858,neg,ns,0.773806111,Slc9a1,Slc9a1_Exon,4,133411844,133411893,133411892,133411893,50,+,TGTGATCCCCACTATCTCAAGCATCGTCCCGGAGAGCTGCCTGCTGATCG,"Exon (Slc9a1-201/Slc9a1, exon 2 of 12)",4,133369706,133423702,53997,1,Slc9a1-201,42138,Slc9a1-201;Slc9a1-203;Slc9a1-205,Slc9a1;Slc9a1;Slc9a1,0;0;-4413,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,20544,ENSMUSG00000028854,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1501,cg21390110,-0.0000128,0.00000812,-1.582638731,0.114523482,loss,ns,-0.0000356,0.0000138,-2.584350265,0.010213321,neg,ns,0.018719328,0.004039718,4.633820406,0.00000529,pos,ns,5.276252269,-0.000510101,0.000138926,-3.671756008,0.000283607,neg,ns,0.775721746,Ddx3x,Ddx3x_Exon,X,13287316,13287365,13287316,13287317,50,-,CGCTGGTGTGACAAATCAGATGAAGATGATTGGTCAAAACCACTCCCACC,"Exon (Ddx3x-201/Ddx3x, exon 5 of 17)",20,13280970,13294052,13083,1,Ddx3x-201,6346,Ddx3x-201;Ddx3x-205;Ddx3x-204;Ddx3x-202;Ddx3x-203,Ddx3x;Ddx3x;Ddx3x;Ddx3x;Ddx3x,0;0;0;0;-420,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,6,13205,ENSMUSG00000000787,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15512,cg08737597,-0.0000239,0.0000102,-2.336842993,0.020083942,loss,ns,0.0000449,0.0000174,2.584270406,0.010215635,pos,ns,0.006942126,0.00508947,1.364017462,0.173551587,pos,ns,0.760571411,-0.000415424,0.000175026,-2.373492812,0.018230019,neg,ns,0.744445191,Gm7503,Gm7503_Intergenic_upstream,18,81471850,81471899,81471850,81471851,50,+,CGGGTCATCTGCTCATCTGTCACGGCCCATCAGCTTTAGGGAGAAAAATC,Distal Intergenic,18,80997003,80997383,381,2,Gm7503-201,-474467,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,17,21,665124,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22596,cg02473887,-0.00000127,0.00000224,-0.566502873,0.571461882,loss,ns,0.00000983,0.00000381,2.584213087,0.010217296,pos,ns,0.004305074,0.001114849,3.861574991,0.000137154,pos,ns,3.862791356,-0.000074,0.0000383,-1.929514544,0.054579411,neg,ns,0.946183634,Srsf9,Srsf9_threeUTR,5,115332609,115332658,115332657,115332658,50,-,AGAAGCACCAGCTATGGCTACTCACGGTCTCGGTCTGGGTCAAGGGGCCG,3' UTR,5,115327177,115333080,5904,1,Srsf9-201,5432,Gatc-201;Srsf9-201;Srsf9-205;Srsf9-203;Srsf9-202;Srsf9-204,Gatc;Srsf9;Srsf9;Srsf9;Srsf9;Srsf9,8520;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,2,108014,ENSMUSG00000029538,mapped to different genes,5,115332594,115332686,93,*,93,9,0.64516129,0.931034483,0.096774194,0.000000492,CpGisland,TRUE,U10,Tr-S
13712,cg13228051,-0.00000707,0.00000661,-1.068358264,0.286190157,loss,ns,-0.000029,0.0000112,-2.583846521,0.010227927,neg,ns,-0.003998078,0.003291548,-1.214649609,0.225424159,neg,ns,0.646999542,0.000132215,0.000113196,1.168016945,0.243697444,pos,ns,0.862944819,Rapgef4,Rapgef4_Exon,2,72201050,72201099,72201050,72201051,50,+,CGTGGAGGCGAATACAGTCAGACTTAAAGAACATGACCAAGATGTCTTGG,"Exon (Rapgef4-202/Rapgef4, exon 15 of 31)",2,71981240,72257474,276235,1,Rapgef4-202,219810,Rapgef4-202;Rapgef4-203;Rapgef4-201;Rapgef4-204;Rapgef4-210;Rapgef4-211,Rapgef4;Rapgef4;Rapgef4;Rapgef4;Rapgef4;Rapgef4,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,11,56508,ENSMUSG00000049044,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U5,En-Sd
10265,cg20168281,0.0000628,0.00000679,9.254897738,3.64E-18,gain,yes,-0.0000298,0.0000115,-2.582745966,0.010259905,neg,ns,0.005016114,0.003376999,1.485376317,0.138460353,pos,ns,0.858674567,0.000111489,0.000116135,0.959997388,0.337804678,pos,ns,0.133833729,Evx1,Evx1_Exon,6,52314189,52314238,52314237,52314238,50,-,CGAGTCGGATTTCTATGAAGAAATCGAGGTGAGCTGCACCCCGGACTGCG,Promoter (<=1kb),6,52313498,52318378,4881,1,Evx1-201,691,Evx1-201;Evx1-202,Evx1;Evx1,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,19,14028,ENSMUSG00000005503,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
21805,cg21847690,-0.00000444,0.00000404,-1.096830339,0.273566848,loss,ns,0.0000177,0.00000687,2.582650923,0.01026267,pos,ns,0.005724807,0.002012787,2.84421892,0.004748046,pos,ns,2.323485073,-0.000163508,0.0000692,-2.362166711,0.018786186,neg,ns,0.901013124,Gm1943,Gm1943_Intron,8,109187693,109187742,109187741,109187742,50,+,ACACAATTTGGCCTAAAATTGAATTTCTCTGATAAGGCATTTCAGAAGCG,"Intron (D030068K23Rik-202/D030068K23Rik-202, intron 5 of 9)",8,109340691,109340864,174,2,Gm1943-201,153122,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,28,384864,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7371,cg06894182,0.000000987,0.00000384,0.257328897,0.797095609,gain,ns,0.0000168,0.00000652,2.582579726,0.010264742,pos,ns,0.004329169,0.001909033,2.267728938,0.02403373,pos,ns,1.619178816,-0.0000872,0.0000657,-1.328739446,0.184911168,neg,ns,0.933269102,Gm16415,Gm16415_Intergenic_upstream,18,42421759,42421808,42421807,42421808,50,+,TCCCAGAGGTCCCGGCATGGATGCAAACCAATTAAGTTAAGCACCTACCG,Distal Intergenic,18,42441019,42441507,489,1,Gm16415-201,-19211,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,4,100042767,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6555,cg04477447,0.0000108,0.00000546,1.97285414,0.049400387,gain,ns,0.000024,0.00000928,2.582578667,0.010264773,pos,ns,0.000536327,0.002719398,0.197222824,0.843782418,pos,ns,0.073769529,0.000142618,0.0000935,1.52499688,0.128279402,pos,ns,0.036107665,Cyp26a1,Cyp26a1_Exon,19,37698295,37698344,37698343,37698344,50,+,GGAAGTTCCTGCAGATGAAGCGCAGGAAATACGGCTTCATCTACAAGACG,Promoter (<=1kb),19,37697798,37701536,3739,1,Cyp26a1-201,497,Cyp26a1-201;Cyp26a1-202;Cyp26c1-201,Cyp26a1;Cyp26a1;Cyp26c1,0;0;12714,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,13082,ENSMUSG00000024987,conserved gene and region,19,37698184,37698508,325,*,325,30,0.649230769,0.877587759,0.092307692,4.83E-22,CpGisland,TRUE,U3,Pr-B
10161,cg04863892,0.000218171,0.0000177,12.34166948,9.76E-29,gain,yes,-0.0000776,0.00003,-2.582396584,0.010270075,neg,ns,0.025232539,0.008798301,2.867887811,0.004415523,pos,ns,2.355017823,-0.001092225,0.000302573,-3.609791438,0.000357216,neg,ns,0.329869745,Gm28308,Gm28308_fiveUTR,6,52204499,52204548,52204499,52204500,50,+,CGAATCACGTGCTTTTGTTGTCCAGTCGTAAATCCTGCCTGATGACCTCT,5' UTR,6,52163359,52213339,49981,2,Gm28308-201,8791,Gm28308-201;Hoxa3-201;Hoxa3-203;Hoxa5-201;Hoxa6-201,Gm28308;Hoxa3;Hoxa3;Hoxa5;Hoxa6,0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,21,103,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
27342,cg23711940,-0.0000103,0.00000722,-1.431503215,0.153293432,loss,ns,0.0000317,0.0000123,2.582240076,0.010274633,pos,ns,0.006747625,0.003591855,1.878590598,0.061238696,pos,ns,1.212974068,-0.000385005,0.000123524,-3.116856235,0.001999165,neg,ns,0.820487478,Glra2,Glra2_threeUTR,X,165129188,165129237,165129188,165129189,50,-,CGTAGCTCTGGTACCAAAAAGGCAACGGGTTATGAAAATCACAGTACAAT,3' UTR,20,165129017,165327393,198377,2,Glra2-201,198156,Glra2-201,Glra2,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,5,237213,ENSMUSG00000018589,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1019,cg19717233,0.0000405,0.00000555,7.304544708,2.37E-12,gain,yes,-0.0000243,0.00000942,-2.581818021,0.010286936,neg,ns,-0.002235976,0.002760127,-0.810098794,0.418504812,neg,ns,0.378299544,0.0000901,0.0000949,0.949442272,0.343135302,pos,ns,0.886550631,Mib1,Mib1_Intron,18,10787792,10787841,10787840,10787841,50,-,CATATTTAGTCAACCATAGCAAAAAATAGCCTCTCAGCTGTCGATTGTCG,"Intron (Mib1-201/Mib1, intron 12 of 20)",18,10725548,10818578,93031,1,Mib1-201,62244,Mib1-201;Mib1-205;Mib1-202,Mib1;Mib1;Mib1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,3,225164,ENSMUSG00000024294,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11678,cg23240335,-0.00000107,0.00000112,-0.956055841,0.339788981,loss,ns,0.00000491,0.0000019,2.580922915,0.010313071,pos,ns,0.000845262,0.000557233,1.516892086,0.130312991,pos,ns,0.885012285,-0.0000218,0.0000192,-1.139477316,0.255383818,neg,ns,0.981067217,Myo9a,Myo9a_Exon,9,59875231,59875280,59875279,59875280,50,+,TCGAATGGCGCGGACGCGCTCCGATTTCTTGACTAGAGGTACTTTTGCCG,"Exon (Myo9a-205/Myo9a, exon 27 of 43)",9,59750896,59928866,177971,1,Myo9a-203,124335,Myo9a-203;Myo9a-205;Myo9a-206;Myo9a-207,Myo9a;Myo9a;Myo9a;Myo9a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,8,270163,ENSMUSG00000039585,conserved gene and region,9,59875212,59875313,102,*,102,9,0.529411765,1.35,0.088235294,0.00000109,CpGisland,TRUE,NA,NRS
18941,cg17755632,0.0000817,0.0000229,3.560483208,0.000428247,gain,ns,-0.000100559,0.000039,-2.580486731,0.010325828,neg,ns,0.063814016,0.011416599,5.589581926,4.99E-08,pos,ns,7.301701815,-0.00178259,0.000392616,-4.540289767,0.00000805,neg,ns,0.368336008,Nfia,Nfia_Intron,4,97990543,97990592,97990543,97990544,50,-,CGGAAATTAGGTCAGCCTTCTGGAACATTTATCATGTATACCTGTCACCA,"Intron (Nfia-208/Nfia, intron 3 of 3)",4,97772734,98000466,227733,1,Nfia-208,217809,Nfia-208;Nfia-202;Nfia-203;Nfia-205;Nfia-201;Nfia-204;Nfia-207;Nfia-206,Nfia;Nfia;Nfia;Nfia;Nfia;Nfia;Nfia;Nfia,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,44,18027,ENSMUSG00000028565,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
21570,cg14877474,0.00000534,0.00000552,0.968183697,0.333707378,gain,ns,-0.0000242,0.00000937,-2.580325986,0.010330533,neg,ns,0.010062497,0.002745502,3.66508462,0.000290785,pos,ns,3.536427587,-0.00069517,0.0000944,-7.362712973,1.64E-12,neg,yes,0.921100072,Itpr1,Itpr1_Exon,6,108391840,108391889,108391888,108391889,50,-,AATGTGAGGTTGGATTATAGGATCTCCTGCCTCCTGTGTATATTTAAGCG,"Exon (Itpr1-201/Itpr1, exon 25 of 62)",6,108213096,108551109,338014,1,Itpr1-201,178744,Itpr1-201;Itpr1-205;Itpr1-209;Itpr1-213,Itpr1;Itpr1;Itpr1;Itpr1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,5,16438,ENSMUSG00000030102,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20819,cg20359340,0.0000148,0.0000131,1.131005067,0.258927173,gain,ns,-0.0000573,0.0000222,-2.580321066,0.010330677,neg,ns,-0.002036675,0.006506101,-0.313040767,0.754460189,neg,ns,0.122363672,-0.000243904,0.000223744,-1.090099544,0.276515914,neg,ns,0.746200869,Gm13890,Gm13890_Intergenic_downstream,2,105515740,105515789,105515740,105515741,50,+,CGCCAGAAAGAGTCACTAATTATGATATGTATTTGCATATGTTTAATCAC,Distal Intergenic,2,105537093,105537482,390,2,Gm13890-201,21693,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14503,cg08397597,-0.00000186,0.00000177,-1.04905599,0.294969511,loss,ns,0.00000776,0.00000301,2.580214953,0.010333784,pos,ns,0.001234503,0.000880912,1.401391916,0.162097251,pos,ns,0.790224349,-0.000016,0.0000303,-0.527161078,0.598458777,neg,ns,0.938826808,Puf60,Puf60_Exon,15,76074385,76074434,76074433,76074434,50,-,TTTAAGGTGGGCCCTCAGAGCAGATGGAGGCCTCCCCAGGGGCGGTCCCG,"Exon (Puf60-211/Puf60, exon 5 of 5)",15,76070182,76080913,10732,2,Puf60-202,6479,Puf60-202;Puf60-204;Puf60-201;Puf60-203;Puf60-207;Puf60-210;Puf60-211;Puf60-208;Puf60-206;Puf60-209;Scrib-201;Scrib-202;Scrib-203,Puf60;Puf60;Puf60;Puf60;Puf60;Puf60;Puf60;Puf60;Puf60;Puf60;Scrib;Scrib;Scrib,0;0;0;-2988;0;0;0;0;3268;2519;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,6,67959,ENSMUSG00000002524,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7548,cg13484596,-0.00000856,0.00000604,-1.417918362,0.157218996,loss,ns,0.0000265,0.0000103,2.579877476,0.01034367,pos,ns,0.008368495,0.003005071,2.784790556,0.005685653,pos,ns,2.245219615,-0.000224365,0.000103344,-2.171050868,0.030685743,neg,ns,0.896691713,Zbtb20,Zbtb20_Intron,16,43122397,43122446,43122445,43122446,50,+,ATACATACAGTGTATATATATTTCTGTCACTTTGTCTCAAATTAAACACG,"Intron (Zbtb20-209/Zbtb20, intron 3 of 7)",16,42875881,43463175,587295,1,Zbtb20-209,246516,Zbtb20-209;Zbtb20-211;Zbtb20-217;Zbtb20-218;Zbtb20-204,Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,98,56490,ENSMUSG00000022708,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11621,cg02739728,0.00005,0.00000643,7.772737536,1.14E-13,gain,yes,-0.0000282,0.0000109,-2.578725253,0.01037749,neg,ns,0.003969834,0.003201564,1.23996727,0.215925265,pos,ns,0.665696539,0.000115146,0.000110102,1.04581512,0.296461165,pos,ns,0.167873839,Emx2,Emx2_Intergenic_downstream,19,59467283,59467332,59467331,59467332,50,-,AAAGTGAAGCAGAGGCGGCTCGCCTTGATCCACTGCAAACAAATTTGGCG,Downstream (1-2kb),19,59462802,59464215,1414,1,Emx2-203,4530,Emx2-201;Emx2-202;Emx2-203,Emx2;Emx2;Emx2,0;7764;4481,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,15,23,13797,ENSMUSG00000043969,mapped to different genes,19,59467121,59467392,272,*,272,18,0.525735294,0.993103448,0.066176471,7.09E-11,CpGisland,TRUE,U13,Hc-P
20958,cg23436080,0.00000883,0.00000389,2.273837587,0.023659227,gain,ns,-0.000017,0.0000066,-2.578462259,0.010385223,neg,ns,-0.005528524,0.001933629,-2.859144065,0.004535811,neg,ns,2.34334504,0.0000838,0.0000665,1.26019292,0.208547565,pos,ns,0.864145727,Tanc2,Tanc2_Exon,11,105867473,105867522,105867521,105867522,50,+,TATTTACTCCAGTGCAATATGAAGTTCCCAACCCAGTCTTCCTTTGACCG,"Exon (Tanc2-202/Tanc2, exon 13 of 26)",11,105589991,105929304,339314,1,Tanc2-202,277482,Tanc2-202,Tanc2,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,15,20,77097,ENSMUSG00000053580,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26,cg10241757,0.0000391,0.00000345,11.33173003,3.88E-25,gain,yes,-0.0000151,0.00000586,-2.578397362,0.010387132,neg,ns,0.001880262,0.001717852,1.094542847,0.274566669,pos,ns,0.561352185,-0.000120411,0.0000591,-2.038211289,0.042377266,neg,ns,0.122168508,Cdk6,Cdk6_Promoter,5,3342421,3342470,3342421,3342422,50,-,CGGCTGCAGCCTTTGTAGTCGCGGAGGAATGCGGAAATGTTGAAGCACTA,Promoter (<=1kb),5,3341485,3344453,2969,1,Cdk6-205,936,Cdk6-205;Cdk6-204;Cdk6-202;Cdk6-203;Cdk6-201,Cdk6;Cdk6;Cdk6;Cdk6;Cdk6,0;-1262;0;-1446;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,1,2,12571,ENSMUSG00000040274,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
24992,cg17009874,-0.00000151,0.0000058,-0.260577747,0.794591157,loss,ns,0.0000254,0.00000985,2.578161718,0.010394066,pos,ns,0.000644387,0.002884363,0.223407146,0.823365789,pos,ns,0.084407182,0.000149146,0.0000992,1.503592427,0.133704395,pos,ns,0.853690724,Lef1,Lef1_Intron,3,131137477,131137526,131137477,131137478,50,-,CGGGGAGCAGAGAACACTGGAGTCCCGCTGACATGCCACATCTCGATGAC,"Intron (Lef1-201/Lef1, intron 3 of 11)",3,131110471,131224356,113886,1,Lef1-201,27006,Lef1-201;Lef1-202;Lef1-204;Lef1-203;Lef1-205;Lef1-208;Lef1-207,Lef1;Lef1;Lef1;Lef1;Lef1;Lef1;Lef1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,9,16842,ENSMUSG00000027985,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1571,cg23135349,-0.0000137,0.00000476,-2.868068434,0.004413069,loss,ns,0.0000209,0.00000809,2.578161489,0.010394073,pos,ns,0.002945432,0.002370556,1.242506697,0.214988727,pos,ns,0.667584312,-0.000146716,0.0000815,-1.799682414,0.072883051,neg,ns,0.911432723,Zfp521,Zfp521_Intron,18,13769167,13769216,13769167,13769168,50,-,CGCTCAGGACCAGCAAGCTGCCTTCACAGTGGGCCAAAAGTCATTATCAT,"Intron (Zfp521-201/Zfp521, intron 5 of 7)",18,13687013,13972787,285775,2,Zfp521-201,203571,Zfp521-201;Zfp521-205;Zfp521-204,Zfp521;Zfp521;Zfp521,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,81,225207,ENSMUSG00000024420,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15140,cg25528941,0.0000818,0.0000415,1.97210785,0.049485932,gain,ns,0.000181646,0.0000705,2.578060195,0.010397055,pos,ns,0.042088716,0.020641885,2.03899578,0.042298409,pos,ns,1.373675964,-0.000375065,0.000709873,-0.528354932,0.597631042,neg,ns,0.485248459,Maff,Maff_Exon,15,79357627,79357676,79357675,79357676,50,-,GCAGAAGTCGGAGCTGGAGCGCGAGGTGGACAAGCTGGCGCGCGAGAACG,"Exon (Maff-203/Maff, exon 3 of 3)",15,79346621,79359072,12452,1,Maff-203,11006,Maff-203;Maff-201;Maff-202;Maff-204;Tmem184b-201;Tmem184b-202;Tmem184b-204,Maff;Maff;Maff;Maff;Tmem184b;Tmem184b;Tmem184b,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,5,17133,ENSMUSG00000042622,conserved gene but different region,15,79357314,79357884,571,*,571,71,0.712784588,0.979251208,0.124343257,1.75E-61,CpGisland,TRUE,U4,Pr-F
18633,cg25338252,-0.0000292,0.0000095,-3.074722011,0.002294474,loss,ns,0.0000416,0.0000161,2.57787566,0.010402489,pos,ns,0.013208558,0.004730678,2.792107094,0.005561793,pos,ns,2.254785178,-0.000437805,0.000162688,-2.691074827,0.007508633,neg,ns,0.515109525,Gm8637,Gm8637_Intron,8,96350830,96350879,96350830,96350831,50,+,CGGATATCTGGAGAGTTGTGCCAATATTCTCTTATCTAACTGGCCTTTCA,"Intron (Gm32005-201/Gm32005-201, intron 1 of 4)",8,95921529,95922613,1085,1,Gm8637-201,429301,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,4,667445,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14381,cg10700567,-0.0000175,0.00000862,-2.026888259,0.043529441,loss,ns,0.0000377,0.0000146,2.577757898,0.010405959,pos,ns,0.00435293,0.004290273,1.01460425,0.311085733,pos,ns,0.507119906,0.000000488,0.000147542,0.00330472,0.997365345,pos,ns,0.51020137,Speg,Speg_Exon,1,75422088,75422137,75422136,75422137,50,+,CGGGGAGGCCTGGGTGAGGGCGAGTATGCCCAGAGGCTGCAGGCCCTGCG,"Exon (Speg-201/Speg, exon 30 of 41)",1,75375297,75432320,57024,1,Speg-201,46791,Speg-201;Speg-211;Speg-212,Speg;Speg;Speg,0;0;-1373,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,9,11790,ENSMUSG00000026207,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
7908,cg27275164,-0.00000267,0.0000064,-0.416595762,0.677262411,loss,ns,0.000028,0.0000109,2.577666529,0.010408652,pos,ns,0.001414223,0.003185443,0.443964247,0.657378168,pos,ns,0.182184723,0.0000585,0.000109547,0.533754572,0.593893854,pos,ns,0.902284825,Hif1an,Hif1an_Intron,19,44631553,44631602,44631553,44631554,50,-,CGTTCACGGAACATTAACTCTCACACATTCTCCAGTTGCAGGGAATTAAT,"Intron (Gm35460-201/Gm35460-201, intron 3 of 6)",19,44562850,44563952,1103,1,Hif1an-202,68752,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,31,319594,ENSMUSG00000036450,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
537,cg10887796,-0.0000403,0.0000183,-2.207403027,0.028018173,loss,ns,0.0000799,0.000031,2.576141079,0.010453698,pos,ns,0.00958204,0.009088326,1.05432398,0.292555647,pos,ns,0.533791514,-0.000371311,0.000312547,-1.188016856,0.235736163,neg,ns,0.704315545,Rbfox1,Rbfox1_Intron,16,6857053,6857102,6857053,6857054,50,-,CGATTGATTGGGTCTGACATTGCACTTGTCACCTTGAAATGCAAAATCCA,"Intron (Rbfox1-205/Rbfox1, intron 4 of 11)",16,5885355,7353045,1467691,1,Rbfox1-205,971698,Rbfox1-205;Rbfox1-201;Rbfox1-202,Rbfox1;Rbfox1;Rbfox1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,35,268859,ENSMUSG00000008658,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25326,cg00847072,-0.0000141,0.00000393,-3.592230097,0.000381138,loss,ns,0.0000172,0.00000668,2.575781612,0.010464338,pos,ns,0.003606708,0.001957421,1.84258125,0.066344934,pos,ns,1.178192234,-0.000122991,0.0000673,-1.827075796,0.068649733,neg,ns,0.912215483,Vps37d,Vps37d_threeUTR,5,135072943,135072992,135072943,135072944,50,-,CGGGGCTGGGGACAGAACGTACAAAGACAAGGACCTGCCCTCAAAAAGCT,3' UTR,5,135072900,135078266,5367,2,Vps37d-201,5274,Vps37d-201;Vps37d-202,Vps37d;Vps37d,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,194309,ENSMUSG00000043614,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4085,cg06031930,-0.00000161,0.00000127,-1.270688194,0.204792352,loss,ns,0.00000556,0.00000216,2.575453815,0.01047405,pos,ns,0.00062894,0.000632021,0.995124646,0.320451757,pos,ns,0.494237343,-0.00000892,0.0000217,-0.410204619,0.681939201,neg,ns,0.038686688,Smarca2,Smarca2_fiveUTR,19,26748475,26748524,26748475,26748476,50,-,CGCAACACGTCACCAGTCGGAAACTGGGGGTTTGCTTCTGTGATTTATTT,Promoter (<=1kb),19,26748514,26752024,3511,1,Smarca2-243,0,Smarca2-216;Smarca2-201;Smarca2-209;Smarca2-202;Smarca2-206;Smarca2-239;Smarca2-215;Smarca2-223;Smarca2-214;Smarca2-211;Smarca2-229;Smarca2-225;Smarca2-240;Smarca2-242;Smarca2-227;Smarca2-204;Smarca2-221;Smarca2-246;Smarca2-244;Smarca2-203;Smarca2-237;Smarca2-220;Smarca2-238;Smarca2-210;Smarca2-213;Smarca2-228;Smarca2-218;Smarca2-241;Smarca2-233;Smarca2-243;Smarca2-230;Smarca2-205;Smarca2-234;Smarca2-224;Smarca2-231;Smarca2-207;Smarca2-226,Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;-1765;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,6,8,67155,ENSMUSG00000024921,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23680,cg20190996,-0.00000387,0.00000286,-1.353381399,0.176919837,loss,ns,0.0000125,0.00000485,2.574780404,0.010494026,pos,ns,0.003764955,0.001421861,2.647906825,0.008513488,pos,ns,2.069892457,-0.000118779,0.0000489,-2.42913282,0.015703042,neg,ns,0.947642266,Ptbp2,Ptbp2_Exon,3,119751931,119751980,119751931,119751932,50,+,CGAAGATGAGGTGTCACAGCAGAATAGTAATTAACCATAGTAATAGCTGC,"Exon (Ptbp2-201/Ptbp2, exon 5 of 14)",3,119718742,119783388,64647,2,Ptbp2-201,31408,Ptbp2-201;Ptbp2-213;Ptbp2-208;Ptbp2-207;Ptbp2-209,Ptbp2;Ptbp2;Ptbp2;Ptbp2;Ptbp2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,13,56195,ENSMUSG00000028134,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6236,cg07683485,-0.00000984,0.00000706,-1.392472027,0.164777474,loss,ns,-0.0000309,0.000012,-2.57447093,0.010503217,neg,ns,-0.005152443,0.003515435,-1.465663277,0.143753578,neg,ns,0.842381337,-0.0000999,0.000120896,-0.826625739,0.409085008,neg,ns,0.891585857,Tshz3,Tshz3_Intergenic_upstream,7,36503966,36504015,36504014,36504015,50,-,TTTAAAAATGTAACTAAAAGCCTTCATCAAAGTTTAAAGAGCTTCTTGCG,Distal Intergenic,7,36698118,36773553,75436,1,Tshz3-201,-194152,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,12,58,243931,ENSMUSG00000021217,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5791,cg12389415,0.0000014,0.00000135,1.034411378,0.301750149,gain,ns,-0.00000592,0.0000023,-2.574439591,0.010504148,neg,ns,0.000153198,0.000674204,0.22722861,0.820395761,pos,ns,0.085976592,0.00000487,0.0000232,0.21016871,0.833674066,pos,ns,0.962404332,Htt,Htt_Exon,5,34795907,34795956,34795955,34795956,50,-,AGTTTGCGTGCTGCCCTGTGGAGGTTTGCTGAGCTGGCTCACCTGGTTCG,"Exon (Htt-205/Htt, exon 5 of 18)",5,34761740,34822078,60339,1,Htt-205,34167,Htt-205;Htt-201;Htt-202;Htt-208,Htt;Htt;Htt;Htt,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,15194,ENSMUSG00000029104,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4604,cg00311934,0.0000362,0.00000428,8.467605093,1.02E-15,gain,yes,-0.0000187,0.00000727,-2.574334689,0.010507266,neg,ns,-0.00266531,0.002129252,-1.251758839,0.211601433,neg,ns,0.674481395,0.0000913,0.0000732,1.246888964,0.213379475,pos,ns,0.778971738,Odf2,Odf2_Exon,2,29925970,29926019,29925970,29925971,50,+,CGAGTTCCTACAGGTGATTGCCAAGAGGGAGGAGGCAATCCACCAGTCCC,"Exon (Odf2-205/Odf2, exon 19 of 21)",2,29889795,29931095,41301,1,Odf2-205,36175,Odf2-211;Odf2-208;Odf2-205;Odf2-204;Odf2-225;Odf2-206;Odf2-203;Odf2-202;Odf2-201;Odf2-207;Odf2-210;Odf2-209;Odf2-221,Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,8,18286,ENSMUSG00000026790,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15566,cg27456541,0.000125402,0.0000153,8.200648965,6.42E-15,gain,yes,-0.0000669,0.000026,-2.574042164,0.010515964,neg,ns,0.040180149,0.007610837,5.279333966,0.000000244,pos,ns,6.61200216,-0.001191851,0.000261736,-4.553638633,0.00000759,neg,ns,0.338195795,Tef,Tef_Exon,15,81815059,81815108,81815059,81815060,50,+,CGAATCTTTCCACCTGGAGTACATGGACCTGGATGAGTTCCTGCTGGAGA,"Exon (Tef-202/Tef, exon 2 of 4)",15,81802421,81826863,24443,1,Tef-202,12638,Tef-202;Tef-203;Tef-206;Tef-201;Tef-210,Tef;Tef;Tef;Tef;Tef,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,21685,ENSMUSG00000022389,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7695,cg05761508,0.000156436,0.0000162,9.683902484,1.51E-19,gain,yes,-0.0000706,0.0000274,-2.573834489,0.010522143,neg,ns,0.067173093,0.008040125,8.354732691,2.23E-15,pos,yes,14.65245515,-0.002014963,0.000276499,-7.287407451,2.64E-12,neg,yes,0.398624794,Fbxl5,Fbxl5_Exon,5,43745310,43745359,43745358,43745359,50,+,AGCGGCAGCAGGCTCGAAAACCACACTGCAAATTCTGGCATCCACTGGCG,"Exon (Fbxl5-204/Fbxl5, exon 11 of 11)",5,43744615,43782143,37529,2,Fbxl5-204,36784,Cc2d2a-201;Fbxl5-204;Fbxl5-209;Fbxl5-211;Fbxl5-201;Fbxl5-203,Cc2d2a;Fbxl5;Fbxl5;Fbxl5;Fbxl5;Fbxl5,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,242960,ENSMUSG00000039753,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14723,cg27273275,0.000000144,0.00000108,0.13335517,0.893999023,gain,ns,0.00000471,0.00000183,2.573752311,0.010524588,pos,ns,0.000535275,0.000536574,0.997578713,0.319261719,pos,ns,0.495853152,0.00000825,0.0000185,0.447000042,0.655187164,pos,ns,0.972765133,Rnf165,Rnf165_threeUTR,18,77461774,77461823,77461822,77461823,50,-,GGTTCGGTCAGGCACCAAAACAAGAAACTCAATGAGAAATATTTGGTGCG,3' UTR,18,77456110,77565136,109027,2,Rnf165-201,103313,Rnf165-201;Rnf165-202;Rnf165-207;Rnf165-204,Rnf165;Rnf165;Rnf165;Rnf165,0;0;5325;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,10,21,225743,ENSMUSG00000025427,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16552,cg14973983,-0.00000245,0.00000449,-0.544942333,0.586184999,loss,ns,0.0000196,0.00000763,2.573631313,0.010528191,pos,ns,0.00636942,0.002234034,2.851084824,0.004649316,pos,ns,2.33261094,-0.000153848,0.0000768,-2.002494891,0.046102164,neg,ns,0.923493123,Camkmt,Camkmt_Exon,17,85431471,85431520,85431471,85431472,50,+,CGTTTTACGATGGGATAATGAGACAGATGTCTCTCAACTGGAAGGACATT,"Exon (Camkmt-201/Camkmt, exon 8 of 11)",17,85090552,85458588,368037,1,Camkmt-201,340919,Camkmt-201,Camkmt,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,44,73582,ENSMUSG00000071037,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15669,cg14962070,0.00000707,0.0000116,0.610346084,0.542079753,gain,ns,0.0000506,0.0000197,2.573599372,0.010529142,pos,ns,0.011219669,0.005764379,1.946379405,0.052512386,pos,ns,1.279738248,-0.0000128,0.000198237,-0.064421128,0.948676428,neg,ns,0.69350476,Nfib,Nfib_Promoter,4,82705828,82705877,82705828,82705829,50,-,CGTTCTTTGTGTATCATGTGTACAAGAGTTAAGTATCTTGCAAGTGGGCG,Promoter (<=1kb),4,82498321,82705750,207430,2,Nfib-212,-127,Nfib-212,Nfib,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,66,18028,ENSMUSG00000008575,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14475,cg07422543,-0.0000128,0.00000228,-5.599430967,4.74E-08,loss,yes,-0.00000998,0.00000388,-2.573534762,0.010531066,neg,ns,-0.003094317,0.001135836,-2.724264161,0.006810146,neg,ns,2.166843607,-0.0000657,0.0000391,-1.681735413,0.093627203,neg,ns,0.958214652,Zc3h3,Zc3h3_Intron,15,75835317,75835366,75835317,75835318,50,+,CGGCTCTTAGCCATCACAATGAATAAAGCTTAATGTTGATTGTGACGGAA,"Intron (Zc3h3-201/Zc3h3, intron 3 of 11)",15,75754430,75841915,87486,2,Zc3h3-201,6549,Zc3h3-201,Zc3h3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,18,223642,ENSMUSG00000075600,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17237,cg05621473,-0.0000609,0.0000274,-2.224261423,0.026850841,loss,ns,0.000119698,0.0000465,2.573496338,0.01053221,pos,ns,-0.00503621,0.013626347,-0.369593509,0.711937731,neg,ns,0.14755799,0.000736477,0.000468609,1.571624848,0.117057639,pos,ns,0.62372254,Nog,Nog_threeUTR,11,89300759,89300808,89300807,89300808,50,-,TCTATATTTACAATAACTGTAAAATAACATTGAACTCTATAGCTTCTTCG,3' UTR,11,89300638,89302332,1695,2,Nog-201,1524,Nog-201,Nog,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,36,18121,ENSMUSG00000048616,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
25735,cg08332206,0.0000291,0.0000153,1.904765299,0.057735922,gain,ns,0.0000667,0.0000259,2.573314953,0.010537614,pos,ns,0.025456568,0.007595525,3.351521663,0.000903167,pos,ns,3.044232036,-0.000644906,0.000261209,-2.468923124,0.014090943,neg,ns,0.753023359,Gm9038,Gm9038_Intergenic_upstream,6,138873146,138873195,138873194,138873195,50,-,ATGCGATTAGTGTTCTTCAGCCATCAGAAAACTGACTGCAGGACTCTGCG,Distal Intergenic,6,138859521,138860124,604,2,Gm9038-201,-13071,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,5,668196,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17597,cg19391758,0.00000959,0.00000561,1.710516305,0.088170899,gain,ns,0.0000245,0.00000953,2.573190231,0.010541331,pos,ns,0.002612766,0.002791176,0.936080477,0.349960393,pos,ns,0.455981104,0.0000638,0.000096,0.664647423,0.506770134,pos,ns,0.902114029,Aktip,Aktip_Exon,8,91171139,91171188,91171187,91171188,50,-,CGCAAATAAGCAGAAAGATTTTATTAAACCAAATGAGCAAATCATCTGCG,"Exon (Gm45666-201/Gm45666-201, exon 2 of 2)",8,91125916,91199976,74061,2,Aktip-209,28788,Aktip-209;Aktip-207,Aktip;Aktip,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,6,14339,ENSMUSG00000031667,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27404,cg21471303,-0.0000141,0.00000295,-4.779162606,0.00000272,loss,ns,-0.0000129,0.00000501,-2.572916643,0.010549489,neg,ns,-0.000777533,0.001468066,-0.529631037,0.596746858,neg,ns,0.224209859,-0.0000879,0.0000505,-1.742035794,0.082493985,neg,ns,0.931844595,Arfgef2,Arfgef2_Exon,2,166873896,166873945,166873944,166873945,50,-,CTATGGCCACACCTTTGAAAAGCACTGGTGGCAGGACCTGTTCAGAATCG,"Exon (Arfgef2-201/Arfgef2, exon 30 of 39)",2,166805588,166898052,92465,1,Arfgef2-201,68308,Arfgef2-201,Arfgef2,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,99371,ENSMUSG00000074582,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16570,cg02059807,0.00000491,0.00000862,0.569052236,0.569732742,gain,ns,-0.0000377,0.0000146,-2.572359604,0.010566117,neg,ns,-0.007511324,0.004291893,-1.750118887,0.081087149,neg,ns,1.09104797,0.000203338,0.000147598,1.377647151,0.169305986,pos,ns,0.820784917,Rpl31-ps16,Rpl31-ps16_Intergenic_upstream,17,85488432,85488481,85488432,85488433,50,-,CGCTCTGTCCCATGCTAATTGCAGCTTACATTATATAAATGGCTTTGTAA,Distal Intergenic,17,85498633,85499008,376,1,Rpl31-ps16-201,-10201,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,13,668850,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
19261,cg12147362,-0.00000845,0.00000489,-1.730389166,0.084555942,loss,ns,-0.0000213,0.0000083,-2.572175658,0.010571613,neg,ns,0.004844524,0.002431553,1.992358125,0.047208508,pos,ns,1.325979722,-0.000159772,0.0000836,-1.91067048,0.056969249,neg,ns,0.812404834,Kmt2d,Kmt2d_Exon,15,98864388,98864437,98864436,98864437,50,-,GTTGCATAGAGGTCACGTGCCCACCCTTTGGCTGCCCTTGGCATGCAACG,"Exon (Kmt2d-202/Kmt2d, exon 10 of 55)",15,98831669,98871183,39515,2,Kmt2d-202,6746,Kmt2d-202;Kmt2d-201,Kmt2d;Kmt2d,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,16,381022,ENSMUSG00000048154,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12681,cg16553145,-0.00000288,0.00000337,-0.853696737,0.393932215,loss,ns,0.0000147,0.00000573,2.572160884,0.010572055,pos,ns,0.005069086,0.00167884,3.019398187,0.002743233,pos,ns,2.561737295,-0.000151177,0.0000577,-2.618453596,0.009266809,neg,ns,0.944884672,Phf20l1,Phf20l1_Exon,15,66597681,66597730,66597729,66597730,50,+,AATCCCAGCATCCACTAAGCTGGTGTTGTCCTATCGACCCAGCTGGATCG,"Exon (Phf20l1-209/Phf20l1, exon 6 of 9)",15,66577560,66611616,34057,1,Phf20l1-209,20121,Phf20l1-209;Phf20l1-210;Phf20l1-205;Phf20l1-201;Phf20l1-211;Phf20l1-203;Phf20l1-206,Phf20l1;Phf20l1;Phf20l1;Phf20l1;Phf20l1;Phf20l1;Phf20l1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,239510,ENSMUSG00000072501,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11413,cg10901883,0.0000164,0.0000054,3.043852167,0.002535768,gain,ns,-0.0000236,0.00000917,-2.571956872,0.010578153,neg,ns,-0.002707821,0.002686546,-1.007918772,0.314279528,neg,ns,0.502683908,0.0000872,0.0000924,0.943952199,0.345929174,pos,ns,0.916134713,Ccdc33,Ccdc33_Intron,9,58043654,58043703,58043654,58043655,50,+,CGTGCCATGAATTTTTCATCAAAAGCCTGTAGACTTTGGGAAACGCACAA,"Intron (Gm16130-201/Gm16130-201, intron 4 of 4)",9,58028677,58102297,73621,2,Ccdc33-201,58594,Ccdc33-201;Ccdc33-203;Ccdc33-210;Ccdc33-204;Ccdc33-206,Ccdc33;Ccdc33;Ccdc33;Ccdc33;Ccdc33,0;0;0;0;-1618,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,8,382077,ENSMUSG00000037716,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
892,cg16321025,-0.00000467,0.00000477,-0.979750571,0.327973238,loss,ns,0.0000208,0.0000081,2.571688337,0.010586186,pos,ns,0.000687216,0.002374026,0.289472777,0.772413114,pos,ns,0.112150362,0.0000203,0.0000816,0.248057903,0.804253839,pos,ns,0.930396423,Gm13220,Gm13220_Intron,2,9435575,9435624,9435575,9435576,50,+,CGCTATCTCAAATTGAGTCCCAGCAAATTTTAATAAAGGCCCAAGGTTGA,"Intron (Gm13219-201/Gm13219-201, intron 3 of 3)",2,9575836,9576343,508,1,Gm13220-201,-140212,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,8,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26296,cg12126703,0.0000479,0.00000822,5.825437973,1.43E-08,gain,yes,-0.0000359,0.000014,-2.571639063,0.01058766,neg,ns,-0.004378223,0.0040908,-1.070260723,0.285334556,neg,ns,0.544645629,0.000354314,0.000140682,2.518542834,0.012287308,pos,ns,0.801617129,Ralgapa2,Ralgapa2_Intron,2,146302320,146302369,146302320,146302321,50,+,CGGTGCAAACCCGAGATTCTTCTGGGGCCCAGCAGGCTTCTGGTCCCTAT,"Intron (Ralgapa2-202/Ralgapa2, intron 38 of 40)",2,146239879,146512004,272126,2,Ralgapa2-202,209635,Gm14117-201;Ralgapa2-202;Ralgapa2-211;Ralgapa2-210;Ralgapa2-205;Ralgapa2-208,Gm14117;Ralgapa2;Ralgapa2;Ralgapa2;Ralgapa2;Ralgapa2,-3178;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,26,241694,ENSMUSG00000037110,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19536,cg19269615,-0.0000133,0.000005,-2.66234261,0.008164753,loss,ns,-0.0000218,0.00000849,-2.571309711,0.01059752,neg,ns,-0.006275862,0.002488007,-2.522445247,0.012154583,neg,ns,1.915259927,0.000138587,0.0000856,1.619724689,0.106308232,pos,ns,0.868390515,Gm20696,Gm20696_Intron,6,99589762,99589811,99589810,99589811,50,-,ACTGCCAAAATAATTGTTTCATTTACAGAACTGAAATTCTCCAGGGAGCG,"Intron (Gm20696-201/Gm20696, intron 3 of 5)",6,99257484,99666797,409314,2,Gm20696-201,76986,Gm20696-201;Gm20696-203,Gm20696;Gm20696,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,5,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25496,cg12591395,-0.0000172,0.00000777,-2.211456723,0.027733539,loss,ns,0.0000339,0.0000132,2.571187754,0.010601174,pos,ns,0.000373722,0.003867824,0.096623408,0.923087902,pos,ns,0.034756941,-0.0000388,0.000133014,-0.291557078,0.770820294,neg,ns,0.843057612,Epha8,Epha8_Exon,4,136940297,136940346,136940297,136940298,50,-,CGGGCACACAGCTGGTCCCCAGGGGCTGACTTGTAGAAGCCCAGCTCACA,"Exon (Epha8-201/Epha8, exon 4 of 17)",4,136929419,136956816,27398,2,Epha8-201,16470,Epha8-201,Epha8,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,4,13842,ENSMUSG00000028661,conserved gene and region,4,136940183,136940317,135,*,135,11,0.696296296,0.727941177,0.081481482,9.48E-08,CpGisland,TRUE,U11,Tr-P
7642,cg13230634,0.00011791,0.0000163,7.237656611,3.61E-12,gain,yes,-0.0000712,0.0000277,-2.570984899,0.010607253,neg,ns,0.003375422,0.008108308,0.416291781,0.677484571,pos,ns,0.169100591,-0.001715332,0.000278844,-6.151580453,2.36E-09,neg,yes,0.537373713,Zbtb20,Zbtb20_Intron,16,43540380,43540429,43540428,43540429,50,-,TTCACTTATAATTATATTGAAAGTAAACACTAATTCACAGACGGACTACG,"Intron (Zbtb20-211/Zbtb20, intron 4 of 4)",16,42907542,43569781,662240,1,Zbtb20-211,632838,Zbtb20-211;Zbtb20-217;Zbtb20-204;Zbtb20-215;Zbtb20-201;Zbtb20-203;Zbtb20-214;Zbtb20-213;Zbtb20-219;Zbtb20-216;Zbtb20-208;Zbtb20-207;Zbtb20-220;Zbtb20-206;Zbtb20-221;Zbtb20-202;Zbtb20-205,Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,98,56490,ENSMUSG00000022708,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10244,cg14572170,-0.00000834,0.00000543,-1.536770163,0.125369609,loss,ns,0.0000237,0.00000922,2.570683919,0.010616278,pos,ns,0.005208849,0.002701096,1.928420469,0.054715828,pos,ns,1.261887023,-0.000180138,0.0000929,-1.939246938,0.053378403,neg,ns,0.899008124,Alcam,Alcam_Exon,16,52268799,52268848,52268799,52268800,50,+,CGTCTGCCTCATCGTGTTCTGGAATACTTACTGAAATGAAAAATGTTAAT,"Exon (Alcam-201/Alcam, exon 13 of 16)",16,52248996,52454074,205079,2,Alcam-201,185226,Alcam-201;Alcam-205;Alcam-207;Alcam-202;Alcam-204;Alcam-203,Alcam;Alcam;Alcam;Alcam;Alcam;Alcam,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,3,11658,ENSMUSG00000022636,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2911,cg16070582,0.00000436,0.00000774,0.562824932,0.573960906,gain,ns,0.0000338,0.0000131,2.570444564,0.01062346,pos,ns,0.001910465,0.003851584,0.496020705,0.620231288,pos,ns,0.207446329,-0.00000933,0.000132456,-0.070444038,0.943885662,neg,ns,0.827692398,Lrmda,Lrmda_Intron,14,22046507,22046556,22046507,22046508,50,-,CGTGTGTCAACAATGGAAGAAATCTGTTAATTGACAAATGAGTGTCACAA,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,26795,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206,Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
894,cg25148482,-0.0000158,0.00000634,-2.501361777,0.012887121,loss,ns,0.0000277,0.0000108,2.570295665,0.010627931,pos,ns,0.001856404,0.003153739,0.588635779,0.556534267,pos,ns,0.25450809,0.00000456,0.000108457,0.042059863,0.966478053,pos,ns,0.85372616,Hmgb3-ps,Hmgb3-ps_Intergenic_upstream,14,9510940,9510989,9510940,9510941,50,-,CGTCTGCCTTTTAATTATAGAAGAGTGATTGCTATGCTAATCATAATCAG,Distal Intergenic,14,9863102,9863702,601,1,Hmgb3-ps-201,-352162,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,100417024,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14272,cg25782412,0.0000267,0.00000577,4.632653285,0.00000532,gain,ns,0.0000252,0.0000098,2.56993295,0.010638827,pos,ns,0.004401219,0.002871378,1.532789898,0.126347501,pos,ns,0.898433344,0.0000636,0.0000987,0.644344955,0.519828248,pos,ns,0.848612328,Fam214a,Fam214a_threeUTR,9,75023624,75023673,75023624,75023625,50,-,CGAGTACCTCCTTCAGGAACAATACAAGTGGTATGTGTTTTATAGCCTAC,3' UTR,9,74952964,75032448,79485,1,Fam214a-205,70660,Fam214a-205;Fam214a-203;Fam214a-202;Fam214a-201,Fam214a;Fam214a;Fam214a;Fam214a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,2,235493,ENSMUSG00000034858,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7750,cg19867914,0.0000673,0.0000158,4.269309874,0.0000261,gain,ns,0.0000688,0.0000268,2.569489511,0.010652162,pos,ns,0.025680674,0.007849752,3.271526675,0.001190287,pos,ns,2.924348448,-0.000445248,0.000269952,-1.649358658,0.100087087,neg,ns,0.604671758,Arhgap15,Arhgap15_Intron,2,44106578,44106627,44106578,44106579,50,-,CGATGAGCTTGGGTGTTATAATAAACAGAGAGGAAGGCTGCAATAATGTA,"Intron (Arhgap15-203/Arhgap15, intron 8 of 14)",2,43748824,44395953,647130,1,Arhgap15-203,357754,Arhgap15-203;Arhgap15-202;Arhgap15-201;Arhgap15-204,Arhgap15;Arhgap15;Arhgap15;Arhgap15,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,72,78,76117,ENSMUSG00000049744,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7517,cg18317754,0.0000652,0.00000895,7.28083416,2.75E-12,gain,yes,-0.0000391,0.0000152,-2.568991077,0.010667169,neg,ns,-0.016925977,0.004456537,-3.798011243,0.000175504,neg,ns,3.755712971,0.000430221,0.00015326,2.807133324,0.005315057,pos,ns,0.676017756,Dnajb5,Dnajb5_fiveUTR,4,42950819,42950868,42950819,42950820,50,+,CGAGGAGCTTTCCGGAGCTTCCCACACTCCTGGGGAGAAGACTTCTTAGC,5' UTR,4,42949814,42959425,9612,1,Dnajb5-201,1005,Dnajb5-201;Dnajb5-203;Dnajb5-205;Dnajb5-206;Dnajb5-202;Dnajb5-207;Dnajb5-204,Dnajb5;Dnajb5;Dnajb5;Dnajb5;Dnajb5;Dnajb5;Dnajb5,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,8,56323,ENSMUSG00000036052,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11796,cg22474739,-0.00000357,0.00000161,-2.216922023,0.027353756,loss,ns,0.00000703,0.00000274,2.56852658,0.01068117,pos,ns,0.002311346,0.00080173,2.882948726,0.004215123,pos,ns,2.375189788,-0.0000745,0.0000276,-2.700572222,0.007302439,neg,ns,0.963578273,Mbnl1,Mbnl1_Exon,3,60622167,60622216,60622167,60622168,50,+,CGCCAGCCACTGTGTCCGCAGCAACAACATCTGCCACAAGTGTTCCCTTC,"Exon (Mbnl1-211/Mbnl1, exon 7 of 9)",3,60473079,60628200,155122,1,Mbnl1-211,149088,Mbnl1-216;Mbnl1-211;Mbnl1-201;Mbnl1-202;Mbnl1-203;Mbnl1-218;Mbnl1-219;Mbnl1-214;Mbnl1-207;Mbnl1-205;Mbnl1-212;Mbnl1-215;Mbnl1-223;Mbnl1-213,Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,19,36,56758,ENSMUSG00000027763,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12572,cg02788185,-0.00000333,0.00000215,-1.54925583,0.122340493,loss,ns,-0.00000938,0.00000365,-2.568293048,0.010688216,neg,ns,-0.00130528,0.001069778,-1.220141144,0.223338748,neg,ns,0.651035922,-0.0000174,0.0000368,-0.472944487,0.636585607,neg,ns,0.963602143,Tjp1,Tjp1_Intron,7,65307639,65307688,65307687,65307688,50,-,GTCATAGCTAGTGTAAGAGCCAAGAAATCTAGGTGATGGCAAAGCAAGCG,"Intron (Tjp1-202/Tjp1, intron 23 of 27)",7,65296165,65371239,75075,2,Tjp1-202,63551,Tjp1-202;Tjp1-201;Tjp1-207,Tjp1;Tjp1;Tjp1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,13,21872,ENSMUSG00000030516,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16873,cg24488657,-0.00000978,0.00000806,-1.213008111,0.226050222,loss,ns,0.0000352,0.0000137,2.568274335,0.010688781,pos,ns,0.009704049,0.004013823,2.417657428,0.016197297,pos,ns,1.79055746,-0.000303788,0.000138035,-2.200800297,0.028487208,neg,ns,0.892308133,Ythdc1,Ythdc1_threeUTR,5,86831765,86831814,86831813,86831814,50,+,GAATTTAGTTTCACAAATCTTATTCCCAACAGACGATTTTCAGGAGTTCG,3' UTR,5,86804221,86836654,32434,1,Ythdc1-202,27544,Ythdc1-202;Ythdc1-203;Ythdc1-208;Ythdc1-201;Ythdc1-207;Ythdc1-206;Ythdc1-205;Ythdc1-204,Ythdc1;Ythdc1;Ythdc1;Ythdc1;Ythdc1;Ythdc1;Ythdc1;Ythdc1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,12,17,231386,ENSMUSG00000035851,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22090,cg14988765,-0.0000094,0.00000578,-1.626214167,0.104920175,loss,ns,0.0000252,0.00000982,2.568230036,0.010690118,pos,ns,0.007418551,0.002876403,2.579107329,0.010366264,pos,ns,1.984377724,-0.00013485,0.0000989,-1.36323688,0.173797134,neg,ns,0.149497717,Pou3f4,Pou3f4_Promoter,X,110812908,110812957,110812956,110812957,50,-,TTGCAATATATTTAATGGAATTTCAAACCAATAAGGGAACTCTGATGCCG,Promoter (1-2kb),20,110814280,110817207,2928,1,Pou3f4-201,-1372,Pou3f4-201,Pou3f4,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,7,18994,ENSMUSG00000056854,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19294,cg01621700,-0.0000238,0.00000566,-4.198875739,0.0000351,loss,ns,0.0000247,0.00000961,2.568229117,0.010690146,pos,ns,0.007660789,0.002815407,2.721023133,0.006875672,pos,ns,2.162684821,-0.000287559,0.0000968,-2.969991991,0.00321068,neg,ns,0.8624231,Foxp1,Foxp1_Exon,6,98941614,98941663,98941614,98941615,50,-,CGCACAAAACACTTGTGAAGACTAAGATTATGACGCACTGCATTCTGCAG,"Exon (Foxp1-206/Foxp1, exon 15 of 18)",6,98925338,99266515,341178,2,Foxp1-206,324852,Foxp1-206;Foxp1-204;Foxp1-220;Foxp1-230;Foxp1-225;Foxp1-201;Foxp1-205;Foxp1-207;Foxp1-208;Foxp1-226;Foxp1-228;Foxp1-221;Foxp1-222;Foxp1-210,Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,87,108655,ENSMUSG00000030067,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27049,cg23494488,-0.00000214,0.000000933,-2.290020106,0.022691616,loss,ns,0.00000407,0.00000159,2.568161906,0.010692175,pos,ns,0.000775904,0.000464521,1.670331945,0.095863005,pos,ns,1.018348962,-0.0000264,0.000016,-1.6549203,0.098952685,neg,ns,0.970911008,Rasal2,Rasal2_Exon,1,157176085,157176134,157176133,157176134,50,+,TGGTCTTGCTGGTTGTACGAGCAAAGAGGGTATCATCAAGGCACAGTTCG,"Exon (Rasal2-201/Rasal2, exon 8 of 18)",1,157135182,157412595,277414,2,Rasal2-201,236461,Rasal2-201;Rasal2-204;Rasal2-203;Rasal2-205;Rasal2-202;Rasal2-207,Rasal2;Rasal2;Rasal2;Rasal2;Rasal2;Rasal2,0;0;0;0;5307;55057,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,10,226525,ENSMUSG00000070565,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5824,cg10650226,-0.000012,0.00000563,-2.130723325,0.03389874,loss,ns,0.0000246,0.00000956,2.567841055,0.010701865,pos,ns,0.007662984,0.002801873,2.734951032,0.006598055,pos,ns,2.180584074,-0.000199282,0.0000964,-2.068184336,0.039451787,neg,ns,0.929151932,Prpf4b,Prpf4b_threeUTR,13,34903132,34903181,34903180,34903181,50,+,GATTTAACTAATGTTTCTGCTATTTTCTCACTTTTCCTTTTGATGGTGCG,Promoter (<=1kb),13,34903154,34904860,1707,1,Prpf4b-209,0,Prpf4b-201;Prpf4b-208;Prpf4b-202;Prpf4b-203;Prpf4b-210;Prpf4b-207;Prpf4b-204;Prpf4b-205;Prpf4b-209,Prpf4b;Prpf4b;Prpf4b;Prpf4b;Prpf4b;Prpf4b;Prpf4b;Prpf4b;Prpf4b,0;0;0;11008;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,4,19134,ENSMUSG00000021413,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10141,cg09756996,0.000167957,0.0000155,10.84586985,1.90E-23,gain,yes,-0.0000675,0.0000263,-2.56745534,0.010713525,neg,ns,-0.00129313,0.007707446,-0.167776712,0.866868343,neg,ns,0.062046857,0.000351596,0.000265058,1.326485198,0.185655404,pos,ns,0.747495406,Gm28308,Gm28308_Exon,6,52202693,52202742,52202741,52202742,50,-,AGGCAAAGAGCATGTGCTATTTCAATCCTCCTTCTGCGGGTCAGGTAACG,"Exon (Hoxa5-201/Hoxa5, exon 2 of 2)",6,52163359,52213339,49981,2,Gm28308-201,10597,Gm28308-201;Hoxa3-201;Hoxa3-203;Hoxa5-201;Hoxa6-201,Gm28308;Hoxa3;Hoxa3;Hoxa5;Hoxa6,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,30,103,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
18726,cg18131673,-0.00000671,0.00000748,-0.897253781,0.370279795,loss,ns,0.0000326,0.0000127,2.56715744,0.010722537,pos,ns,0.001900329,0.003721003,0.510703445,0.609922211,pos,ns,0.214725551,0.0000883,0.000127965,0.68985788,0.490799663,pos,ns,0.886079503,Gm12695,Gm12695_Intergenic_upstream,4,96969343,96969392,96969343,96969344,50,-,CGACAGATTGCAAGTTACGCATGTGTTGAGCAGATGGGTAAGTTAAAAGG,Distal Intergenic,4,96723647,96785186,61540,2,Gm12695-201,-184206,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,4,620779,ENSMUSG00000078639,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8391,cg14589873,-0.00000159,0.00000109,-1.455741228,0.146476119,loss,ns,0.00000476,0.00000185,2.566697497,0.010736466,pos,ns,0.000860925,0.000543091,1.585231233,0.113933333,pos,ns,0.943349197,-0.0000195,0.0000187,-1.044758416,0.296948622,neg,ns,0.973949885,Zeb2,Zeb2_Intron,2,45084308,45084357,45084356,45084357,50,+,GCTATCACACATGGGCAATGACTAATTTTCCTAAGGAATTTTAGTATTCG,"Intron (Zeb2-212/Zeb2, intron 3 of 10)",2,44983632,45117395,133764,2,Zeb2-212,33038,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16712,cg22031598,0.0000217,0.0000141,1.539243658,0.124764901,gain,ns,0.0000614,0.0000239,2.566358769,0.010746734,pos,ns,-0.000348606,0.007005656,-0.049760606,0.960345205,neg,ns,0.017572628,0.000255906,0.000240924,1.062186358,0.288977857,pos,ns,0.557386973,Gpatch2l,Gpatch2l_Intergenic_upstream,12,86214501,86214550,86214549,86214550,50,-,GACCCGTGTATTAGGGGCCTGTATTAATGCCGCGACAGGCGCCTCTTACG,Distal Intergenic,12,86241858,86291784,49927,1,Gpatch2l-204,-27357,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,13,17,70373,ENSMUSG00000021254,conserved gene but different region,12,86214265,86214574,310,*,310,23,0.54516129,1.024719747,0.074193548,7.83E-15,CpGisland,TRUE,U13,Hc-P
20847,cg27281116,-0.0000041,0.00000252,-1.629454755,0.104232466,loss,ns,-0.000011,0.00000427,-2.566338341,0.010747354,neg,ns,0.001908447,0.001252243,1.524022651,0.128522529,pos,ns,0.891020737,-0.000159983,0.0000431,-3.714965905,0.000241003,neg,ns,0.946931474,Ctcf,Ctcf_Exon,8,105664035,105664084,105664035,105664036,50,+,CGATACCCAGATTATAACTTTACAGGTTGTAAATATGGAGGAACAGCCCA,"Exon (Ctcf-201/Ctcf, exon 3 of 12)",8,105636568,105681647,45080,1,Ctcf-204,27467,Ctcf-204;Ctcf-201;Ctcf-202;Ctcf-203;Gm5915-201,Ctcf;Ctcf;Ctcf;Ctcf;Gm5915,0;0;0;0;-3248,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,8,13018,ENSMUSG00000005698,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20852,cg06391630,-0.00000104,0.00000125,-0.828312806,0.408130619,loss,ns,-0.00000547,0.00000213,-2.566284083,0.010749,neg,ns,0.000392932,0.000624418,0.62927789,0.529630599,pos,ns,0.276026932,-0.0000447,0.0000215,-2.082384781,0.038127038,neg,ns,0.966447546,Ctcf,Ctcf_Exon,8,105664906,105664955,105664906,105664907,50,-,CGTTCAAATTTGGATCGTCACATGAAAAGCCACACTGATGAGAGACCACA,"Exon (Ctcf-201/Ctcf, exon 4 of 12)",8,105636568,105681647,45080,1,Ctcf-204,28338,Ctcf-204;Ctcf-201;Ctcf-202;Ctcf-203;Gm5915-201,Ctcf;Ctcf;Ctcf;Ctcf;Gm5915,0;0;0;0;-4119,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,8,13018,ENSMUSG00000005698,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9689,cg12572894,-0.00000491,0.00000722,-0.679570732,0.497283418,loss,ns,-0.0000315,0.0000123,-2.566231573,0.010750593,neg,ns,-0.014839315,0.003593554,-4.129425273,0.0000468,neg,ns,4.329646273,0.000303413,0.000123582,2.455156403,0.014631283,pos,ns,0.797400107,Gm7481,Gm7481_Intergenic_upstream,12,49993044,49993093,49993044,49993045,50,+,CGTGTGAAGTTTCTAGTGATTAATGGGAGAAAAATAAGGCCGCCTGTCCC,Distal Intergenic,12,49840757,49841751,995,2,Gm7481-201,-151293,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,27,37,665077,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25191,cg11035773,-0.00000337,0.0000066,-0.510827171,0.609835666,loss,ns,-0.0000288,0.0000112,-2.565896386,0.010760765,neg,ns,-0.003342632,0.003285214,-1.017477703,0.309719657,neg,ns,0.50903123,-0.0000421,0.000112978,-0.372764501,0.709578461,neg,ns,0.856287756,Zdhhc18,Zdhhc18_Exon,4,133613890,133613939,133613890,133613891,50,-,CGTCTCCCCACACAGTTGCCCACCCAGGGGCAGTGATGGTCAAATCGTTC,"Exon (Zdhhc18-201/Zdhhc18, exon 4 of 8)",4,133605299,133633469,28171,2,Zdhhc18-201,19530,Zdhhc18-201;Zdhhc18-202;Zdhhc18-204;Zdhhc18-203,Zdhhc18;Zdhhc18;Zdhhc18;Zdhhc18,0;0;-856;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,2,503610,ENSMUSG00000037553,conserved gene and region,4,133613738,133613891,154,*,154,11,0.584415584,0.840277778,0.071428571,0.000000364,CpGisland,TRUE,NA,NRS
15640,cg07544506,0.00000064,0.00000216,0.29695497,0.76669976,gain,ns,-0.0000094,0.00000366,-2.565722461,0.010766047,neg,ns,-0.002068145,0.001073237,-1.927015237,0.054891462,neg,ns,1.2604952,0.00004,0.0000369,1.083391011,0.279476822,pos,ns,0.924919824,Nfib,Nfib_Intron,4,82495121,82495170,82495169,82495170,50,-,CACTTCACAAACAAAATGGCGGTTCTTGTAGCAACGAAACAGCCGAAGCG,"Intron (Nfib-201/Nfib, intron 2 of 11)",4,82290173,82505308,215136,2,Nfib-201,10138,Nfib-201;Nfib-203;Nfib-202;Nfib-205;Nfib-206;Nfib-204;Nfib-207;Nfib-209;Nfib-210;Nfib-208;Nfib-212;Nfib-211,Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,66,18028,ENSMUSG00000008575,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18401,cg14723263,0.00000151,0.00000262,0.574767498,0.565865429,gain,ns,0.0000114,0.00000446,2.565608096,0.010769522,pos,ns,0.004204143,0.001305688,3.219868065,0.001418516,pos,ns,2.848165737,-0.00007,0.0000449,-1.558252033,0.120193795,neg,ns,0.950459897,Arhgef9,Arhgef9_fiveUTR,X,95130951,95131000,95130951,95130952,50,+,CGGTTGGCCATGGTGACGTGATCCCATACTGCCTCAGCACTAACGATGGA,5' UTR,20,95048935,95166361,117427,2,Arhgef9-202,35361,Arhgef9-202;Arhgef9-217;Arhgef9-205;Arhgef9-207;Arhgef9-210;Arhgef9-203;Arhgef9-209;Arhgef9-206;Arhgef9-208;Arhgef9-204;Arhgef9-216;Arhgef9-219;Arhgef9-201;Arhgef9-218;Arhgef9-220;Arhgef9-213;Arhgef9-214,Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,8,14,236915,ENSMUSG00000025656,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17540,cg21884043,-0.0000248,0.0000162,-1.533092189,0.126273023,loss,ns,0.0000706,0.0000275,2.565210047,0.010781622,pos,ns,0.024778262,0.008059744,3.07432368,0.002297448,pos,ns,2.638754235,-0.000244002,0.000277174,-0.880320386,0.379367716,neg,ns,0.887491445,Gm19935,Gm19935_Intergenic_downstream,8,90784696,90784745,90784744,90784745,50,+,AACTGGAATAGTATTCACATTTAGACCTGCATATTAATTGGCTGATAACG,Distal Intergenic,8,90816145,90817393,1249,2,Gm19935-201,32648,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,3,100503868,ENSMUSG00000110332,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7091,cg22949148,0.0000225,0.0000147,1.527864435,0.127565865,gain,ns,-0.0000642,0.000025,-2.565176372,0.010782647,neg,ns,0.02665259,0.007335791,3.633226625,0.000327485,pos,ns,3.484808653,-0.001093023,0.000252277,-4.33262482,0.0000199,neg,ns,0.760575973,Slc7a2,Slc7a2_Exon,8,40908447,40908496,40908447,40908448,50,+,CGGGATGGCTTACTGTTTAGATTTCTTGCCAGAGTGAGTAAGAGGCAGTC,"Exon (Slc7a2-201/Slc7a2, exon 7 of 12)",8,40862396,40918056,55661,1,Slc7a2-202,46051,Slc7a2-202;Slc7a2-201;Slc7a2-203;Slc7a2-204,Slc7a2;Slc7a2;Slc7a2;Slc7a2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,11988,ENSMUSG00000031596,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5464,cg24263594,0.0000645,0.000014,4.602187226,0.00000611,gain,ns,0.000061,0.0000238,2.564300566,0.010809316,pos,ns,0.028053405,0.006970631,4.024514509,0.0000718,pos,ns,4.143791419,-0.000601237,0.000239719,-2.508086368,0.012649324,neg,ns,0.834343081,Mvb12b,Mvb12b_Intergenic_upstream,2,34016645,34016694,34016693,34016694,50,+,TTACCTCGTCTAAATGTCACCCACCGATATTTTGTTAGACATTAGCGGCG,Distal Intergenic,2,33729953,33887946,157994,2,Mvb12b-201,-128699,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,16,47,72543,ENSMUSG00000038740,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23150,cg09522374,-0.000138435,0.000013,-10.67023006,7.59E-23,loss,yes,0.0000565,0.000022,2.5643,0.010809333,pos,ns,-0.008595697,0.006457258,-1.331168376,0.184111747,neg,ns,0.734918502,-0.000118564,0.000222065,-0.533914633,0.593783237,neg,ns,0.739809407,Rnf220,Rnf220_Intron,4,117359982,117360031,117359982,117359983,50,-,CGAGCACAGCTTTTTCCACTTAATAAGCAGAGTGCTGACTTCATTGCGGG,"Intron (Rnf220-201/Rnf220, intron 2 of 14)",4,117271463,117497052,225590,2,Rnf220-201,137021,Rnf220-201;Rnf220-202;Rnf220-207,Rnf220;Rnf220;Rnf220,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18798,cg05618746,0.0000273,0.00000539,5.071206395,0.000000682,gain,yes,-0.0000235,0.00000916,-2.563860789,0.01082273,neg,ns,-0.005166164,0.002683976,-1.924817385,0.055167109,neg,ns,1.258319771,0.000166701,0.0000923,1.806046598,0.071880871,pos,ns,0.688919864,Arhgap23,Arhgap23_Exon,11,97463587,97463636,97463587,97463588,50,+,CGTGTTCCGGCTGACCACCGCTGACTTCTGTGAATATCTCTTTCAGGCTG,"Exon (Arhgap23-203/Arhgap23, exon 12 of 24)",11,97415533,97502402,86870,1,Arhgap23-203,48054,Arhgap23-203;Arhgap23-202;Arhgap23-204,Arhgap23;Arhgap23;Arhgap23,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,8,58996,ENSMUSG00000049807,mapped to different genes,11,97463388,97463699,312,*,312,36,0.692307692,0.98457223,0.115384615,4.29E-30,CpGisland,TRUE,U10,Tr-S
23359,cg14198986,-0.00000104,0.00000293,-0.354743683,0.72302283,loss,ns,-0.0000127,0.00000497,-2.56345754,0.010835043,neg,ns,-0.001649604,0.001455948,-1.133010221,0.258085479,neg,ns,0.588236429,0.0000172,0.0000501,0.344311942,0.730845153,pos,ns,0.911282672,Smg1,Smg1_threeUTR,7,118156885,118156934,118156933,118156934,50,+,CCTTCTACTCCAGTTACACCCAGTGCTGTTTCAATGTTTTGTGTCATTCG,3' UTR,7,118131308,118243637,112330,2,Smg1-201,86703,Smg1-201;Smg1-204;Smg1-208,Smg1;Smg1;Smg1,0;0;2330,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,7,9,233789,ENSMUSG00000030655,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4107,cg11199584,-0.0000236,0.00000761,-3.097509941,0.002130113,loss,ns,0.0000331,0.0000129,2.563182694,0.010843442,pos,ns,-0.001632728,0.003788621,-0.43095581,0.666800004,neg,ns,0.176004406,0.000155766,0.00013029,1.195530674,0.232793483,pos,ns,0.823591592,Gm45647,Gm45647_Intergenic_downstream,8,26808493,26808542,26808541,26808542,50,-,ACATCTGATTTGTACAAATTTCAAGACTAATAAATCTACCTGTCAAAGCG,Distal Intergenic,8,26780315,26780509,195,1,Gm45647-201,28227,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,62,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8481,cg13099136,0.0000341,0.00000525,6.497940044,3.24E-10,gain,yes,-0.0000229,0.00000892,-2.56303431,0.010847979,neg,ns,-0.004124671,0.002614683,-1.577503187,0.115699656,neg,ns,0.936667932,0.000171274,0.0000899,1.904762352,0.057736307,pos,ns,0.783990316,Gm13475,Gm13475_Intergenic_upstream,2,45225603,45225652,45225651,45225652,50,+,CTCGATTGCTCTCCCAGCGCACAGCTATTTAATAGTGGTGCTGGTGTCCG,Distal Intergenic,2,45329232,45329465,234,1,Gm13475-201,-103580,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,12,21,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14486,cg08657599,-0.00000489,0.00000299,-1.635542352,0.102950304,loss,ns,0.000013,0.00000508,2.562980512,0.010849625,pos,ns,0.004291777,0.001487015,2.886168965,0.004173365,pos,ns,2.379513654,-0.000126032,0.0000511,-2.46453764,0.014261119,neg,ns,0.946521406,Ptprd,Ptprd_threeUTR,4,75944951,75945000,75944999,75945000,50,-,GGGGTTTCTACGTTGCATAGTGGTCAAAGCTGCCCAGGTACTCTAGTGCG,3' UTR,4,75941238,76449980,508743,2,Ptprd-206,504980,Ptprd-206;Ptprd-204;Ptprd-213;Ptprd-220;Ptprd-203;Ptprd-217;Ptprd-218;Ptprd-219;Ptprd-201,Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,8,32,19266,ENSMUSG00000028399,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19609,cg23886556,-0.0000051,0.000002,-2.551325942,0.011211369,loss,ns,0.00000869,0.00000339,2.562659862,0.010859436,pos,ns,0.001541405,0.000993937,1.550807037,0.121968207,pos,ns,0.91375336,-0.0000698,0.0000342,-2.040903367,0.04210718,neg,ns,0.951697029,Spag17,Spag17_Exon,3,100058803,100058852,100058851,100058852,50,-,GCAAGTTTGGATCTTTTTCTGCCACCTTAGAAAATGGAATCTGCCTCTCG,"Exon (Spag17-204/Spag17, exon 24 of 49)",3,99885417,100143322,257906,1,Spag17-204,173386,Spag17-204,Spag17,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,74362,ENSMUSG00000027867,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25876,cg12276099,-0.00000208,0.000004,-0.520368386,0.603178272,loss,ns,-0.0000174,0.00000679,-2.562362648,0.010868537,neg,ns,0.007348671,0.001989295,3.694108656,0.000260753,pos,ns,3.583770413,-0.0000946,0.0000684,-1.383197865,0.167599563,neg,ns,0.914738591,Rbm41,Rbm41_Exon,X,139968263,139968312,139968263,139968264,50,+,CGATTTCTCTGGATTTCATCTTCTGGGACAAATTCTATTGGCTGCGTCAG,"Exon (Rbm41-202/Rbm41, exon 5 of 7)",20,139889511,139998595,109085,2,Rbm41-202,30283,Rbm41-202;Rbm41-204;Rbm41-203;Rbm41-201;Rbm41-206;Rbm41-205,Rbm41;Rbm41;Rbm41;Rbm41;Rbm41;Rbm41,0;0;0;0;0;30224,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,237073,ENSMUSG00000031433,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12309,cg09434016,0.0000187,0.0000303,0.616803814,0.537816855,gain,ns,0.000131735,0.0000514,2.56226017,0.010871677,pos,ns,0.039602439,0.01506247,2.629212869,0.008984956,pos,ns,2.046484046,-0.001034369,0.000517997,-1.996863158,0.046714081,neg,ns,0.41282376,Gm18541,Gm18541_Intergenic_upstream,9,63880968,63881017,63880968,63880969,50,-,CGACCCCGACCAGCAGCACAGAAAATGTTGGCATAGCAACTTTGGGCATT,Distal Intergenic,9,63898265,63898802,538,1,Gm18541-201,-17297,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,13,100417338,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
4475,cg07998304,-0.00000308,0.00000499,-0.618294261,0.536835383,loss,ns,0.0000217,0.00000847,2.562189953,0.010873829,pos,ns,0.004764716,0.002482563,1.919272587,0.055867676,pos,ns,1.252839397,-0.000170389,0.0000854,-1.995762486,0.046834474,neg,ns,0.556372823,Sox4,Sox4_Exon,13,29015573,29015622,29015621,29015622,50,+,AATAATTCATAGATTGAAATTACCCTGCTTTCACCTTTCCATTTAAGCCG,"Exon (A330102I10Rik-204/A330102I10Rik-204, exon 2 of 2)",13,28948919,28953713,4795,2,Sox4-201,-61860,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,12,20677,ENSMUSG00000076431,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23990,cg17331712,-0.00000823,0.00000151,-5.442821171,0.000000107,loss,yes,0.00000658,0.00000257,2.56165372,0.010890274,pos,ns,0.001475967,0.000752586,1.961192103,0.050751514,pos,ns,1.294551001,-0.000017,0.0000259,-0.65599353,0.512314868,neg,ns,0.062226963,BC048403,BC048403_fiveUTR,10,121740170,121740219,121740218,121740219,50,-,GAAGGTCTATCACAGCCTCACCTACCTGGGGCAGAAACTAGGTACCTCCG,Promoter (<=1kb),10,121739937,121752865,12929,1,BC048403-201,233,BC048403-201;BC048403-202,BC048403;BC048403,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,5,270802,ENSMUSG00000053684,conserved gene but different region,10,121740218,121740388,171,*,171,10,0.701754386,0.488571429,0.058479532,0.00000878,CpGisland,TRUE,NA,NRS
17736,cg15332970,0.000157954,0.0000159,9.940693079,2.16E-20,gain,yes,-0.0000691,0.000027,-2.56153826,0.010893818,neg,ns,-0.014535413,0.007908411,-1.83796885,0.067023751,neg,ns,1.173771271,0.000634816,0.00027197,2.334142545,0.020226865,pos,ns,0.656878501,Fto,Fto_Intron,8,91552327,91552376,91552327,91552328,50,+,CGCTGGGTAGTCAGCTGGGATGTAATTAAGACTCTGAGAACAGGCTGTCT,"Intron (Fto-201/Fto, intron 8 of 8)",8,91313525,91668439,354915,1,Fto-201,238802,Fto-201;Fto-205,Fto;Fto,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,26,26383,ENSMUSG00000055932,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11503,cg15296094,0.0000179,0.00000586,3.058982763,0.002414727,gain,ns,-0.0000255,0.00000996,-2.561137708,0.01090612,neg,ns,-0.005650212,0.00291837,-1.936084472,0.053766205,neg,ns,1.269490615,0.000106585,0.000100363,1.062004269,0.28906038,pos,ns,0.890584663,Nptn,Nptn_Exon,9,58618862,58618911,58618862,58618863,50,+,CGTGAGTGTGCTGAGAATAACCCGGCTCACCTTGGAGGACTCTGGGACTT,"Exon (Nptn-212/Nptn, exon 2 of 8)",9,58582240,58651318,69079,1,Nptn-212,36622,Nptn-212;Nptn-201;Nptn-213;Nptn-206;Nptn-203;Nptn-202;Nptn-211;Nptn-207;Nptn-204,Nptn;Nptn;Nptn;Nptn;Nptn;Nptn;Nptn;Nptn;Nptn,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,20,22,20320,ENSMUSG00000032336,conserved gene and region,9,58618678,58618932,255,*,255,20,0.6,0.879917184,0.078431373,1.96E-13,CpGisland,TRUE,NA,NRS
8049,cg03571891,0.0000805,0.00000613,13.13749544,1.21E-31,gain,yes,-0.0000267,0.0000104,-2.56094109,0.010912163,neg,ns,0.007973426,0.003051317,2.613110137,0.009409713,pos,ns,2.026423614,-0.000034,0.000104935,-0.3238474,0.746271946,neg,ns,0.153081906,Pax5,Pax5_Exon,4,44703360,44703409,44703360,44703361,50,+,CGCCTACTTACTATGCATGGATGCAAACGGGTCGTGCTTACAGTGTATTT,"Exon (Pax5-208/Pax5, exon 1 of 5)",4,44524757,44710487,185731,2,Pax5-201,7078,Pax5-201;Pax5-202;Pax5-203;Pax5-204;Pax5-205;Pax5-207;Pax5-206;Pax5-209;Pax5-210;Pax5-212;Pax5-213;Pax5-214;Pax5-215;Pax5-208;Pax5-216;Pax5-217;Pax5-218;Pax5-219,Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,45,18507,ENSMUSG00000014030,conserved gene but different region,4,44703085,44703505,421,*,421,37,0.617577197,0.926154944,0.087885986,3.03E-26,CpGisland,TRUE,U3,Pr-B
1588,cg11218720,-0.00000422,0.00000279,-1.509966639,0.132070509,loss,ns,0.0000122,0.00000474,2.560783335,0.010917014,pos,ns,0.002685756,0.001390115,1.932039179,0.054265708,pos,ns,1.265474528,-0.0000776,0.0000478,-1.623098268,0.105584831,neg,ns,0.935146919,Zfp521,Zfp521_Intron,18,13798407,13798456,13798407,13798408,50,-,CGCTCTAATTAAGATGTATCTGGTGAACAAGTGTCTGCTTTTCACCCTAC,"Intron (Zfp521-201/Zfp521, intron 5 of 7)",18,13687013,13972787,285775,2,Zfp521-201,174331,Zfp521-201;Zfp521-205;Zfp521-204,Zfp521;Zfp521;Zfp521,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,81,225207,ENSMUSG00000024420,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2420,cg26701034,-0.0000303,0.00000867,-3.502329628,0.00052901,loss,ns,0.0000377,0.0000147,2.560642012,0.010921362,pos,ns,0.001659609,0.004312702,0.384818986,0.700635405,pos,ns,0.154507921,-0.000196568,0.000148313,-1.325355347,0.186029259,neg,ns,0.852320952,Gm4849,Gm4849_Intergenic_downstream,1,19352145,19352194,19352193,19352194,50,+,AAACAATTATCCTCAAAGACATTCAGTCTGGTCTTGACTTGTTAAGAACG,Distal Intergenic,1,19330939,19333184,2246,1,Gm4849-201,21206,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,10,226901,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15683,cg19354122,-0.00000249,0.0000145,-0.171477974,0.863959827,loss,ns,0.0000632,0.0000247,2.560618669,0.01092208,pos,ns,0.001589735,0.007229657,0.219890725,0.826100987,pos,ns,0.082966859,0.000079,0.000248627,0.317634283,0.750976207,pos,ns,0.401719266,Gm14741,Gm14741_Intergenic_upstream,X,82814797,82814846,82814845,82814846,50,-,CTGAAAGAATCATGTTAGGCATGCCCACCTAACCTAACTTGAATCATGCG,Distal Intergenic,20,82757430,82758438,1009,2,Gm14741-201,-56408,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,11,100415954,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18643,cg19559023,0.0000417,0.0000099,4.207254755,0.0000339,gain,ns,0.0000431,0.0000168,2.560549559,0.010924206,pos,ns,0.014985622,0.004929211,3.040166549,0.002566084,pos,ns,2.590729086,-0.000301003,0.000169515,-1.775671076,0.076768112,neg,ns,0.609696229,Skap1,Skap1_Intergenic_upstream,11,96448130,96448179,96448130,96448131,50,-,CGTGCCTCTGAAAAATGGGAGGTGACAGTTCATTTTGCCAGTGACAGTCT,Distal Intergenic,11,96464593,96759130,294538,1,Skap1-203,-16463,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,46,78473,ENSMUSG00000057058,conserved gene and region,11,96447944,96448131,188,*,188,16,0.54787234,1.147215866,0.085106383,2.15E-11,CpGisland,TRUE,U11,Tr-P
11081,cg20669971,0.0000367,0.0000116,3.167117535,0.001692876,gain,ns,-0.0000504,0.0000197,-2.560292892,0.010932108,neg,ns,0.002944825,0.005764602,0.510846233,0.609822333,pos,ns,0.214796675,-0.00020926,0.000198244,-1.055567092,0.291987986,neg,ns,0.067158312,Nkx2-1,Nkx2-1_fiveUTR,12,56535023,56535072,56535071,56535072,50,-,ACTGAGAACGGAGTCGTGTGCTTTGGACTCATCGACATGATTCGGCGGCG,Promoter (<=1kb),12,56531958,56535106,3149,2,Nkx2-1-202,34,Nkx2-1-202;Nkx2-1-201,Nkx2-1;Nkx2-1,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,29,21869,ENSMUSG00000001496,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
2177,cg03218461,-0.00000108,0.00000371,-0.291861525,0.770587717,loss,ns,-0.0000161,0.0000063,-2.560256039,0.010933243,neg,ns,-0.001447552,0.001846361,-0.784002643,0.433637184,neg,ns,0.362873484,-0.0000308,0.0000635,-0.485634595,0.627569319,neg,ns,0.901499736,Kdm6a,Kdm6a_threeUTR,X,18254004,18254053,18254052,18254053,50,+,GGGCTTCACAAAGGTCAGAGTTCACATTCGGCAGGTCCTAATGGTGAACG,3' UTR,20,18162575,18279936,117362,1,Kdm6a-201,91429,Kdm6a-201;Kdm6a-202;Kdm6a-205;Kdm6a-203;Kdm6a-207;Kdm6a-206;Kdm6a-208;Kdm6a-210,Kdm6a;Kdm6a;Kdm6a;Kdm6a;Kdm6a;Kdm6a;Kdm6a;Kdm6a,0;0;0;0;7959;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,7,14,22289,ENSMUSG00000037369,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24106,cg22895640,-0.0000215,0.00000351,-6.142447959,2.49E-09,loss,yes,-0.0000152,0.00000596,-2.560118712,0.010937472,neg,ns,-0.00138683,0.001745038,-0.794728029,0.427379728,neg,ns,0.369186082,0.0000731,0.00006,1.218712917,0.223879778,pos,ns,0.940421908,Fnbp1l,Fnbp1l_Exon,3,122568751,122568800,122568799,122568800,50,-,ACATTATCCATCTGTTTCCAGCACATGTCAAGATATTGTTGAGCTTTTCG,"Exon (Fnbp1l-201/Fnbp1l, exon 5 of 14)",3,122538725,122619715,80991,2,Fnbp1l-201,50915,Fnbp1l-204;Fnbp1l-201;Fnbp1l-203;Fnbp1l-206,Fnbp1l;Fnbp1l;Fnbp1l;Fnbp1l,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,214459,ENSMUSG00000039735,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24385,cg23114362,-0.0000145,0.00000328,-4.433811017,0.0000129,loss,ns,0.0000143,0.00000557,2.559927693,0.010943359,pos,ns,-0.004716329,0.001632485,-2.889049574,0.004136331,neg,ns,2.383384719,0.0000938,0.0000561,1.670671607,0.095795795,pos,ns,0.867113071,Myef2,Myef2_Exon,2,125115425,125115474,125115473,125115474,50,+,CCACAGCACTTACCCTTGATTTTCCTTCCGCATCCTTAAAGAGCTCCACG,"Exon (Myef2-203/Myef2, exon 3 of 19)",2,125086271,125123595,37325,2,Myef2-203,8121,Myef2-203;Myef2-209;Myef2-206;Myef2-201;Myef2-207;Myef2-202;Myef2-205;Myef2-208,Myef2;Myef2;Myef2;Myef2;Myef2;Myef2;Myef2;Myef2,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,17876,ENSMUSG00000027201,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19820,cg01901696,-0.0000413,0.0000117,-3.535452283,0.000469184,loss,ns,0.0000508,0.0000199,2.559751946,0.010948777,pos,ns,0.026227276,0.005816895,4.508810048,0.00000926,pos,ns,5.033546565,-0.001252662,0.000200043,-6.261977546,1.27E-09,neg,yes,0.406575687,Med12,Med12_Exon,X,101274906,101274955,101274906,101274907,50,+,CGGCCTTGAATGTAAAACAAGGTTTCAATAACCAGCCTGCTGTCTCTGGG,Promoter (<=1kb),20,101274030,101297465,23436,1,Med12-204,876,Med12-204;Med12-203;Med12-201;Med12-202,Med12;Med12;Med12;Med12,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,15,15,59024,ENSMUSG00000079487,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U4,Pr-F
12088,cg23233023,0.000507549,0.0000263,19.32157232,3.80E-55,gain,yes,0.000114233,0.0000446,2.559750014,0.010948836,pos,ns,0.00812788,0.013074107,0.621677621,0.534610779,pos,ns,0.271962289,0.001164873,0.000449617,2.590808149,0.010027712,pos,ns,0.574890737,Nrp2,Nrp2_Exon,1,62795855,62795904,62795855,62795856,50,+,CGGTTCCGCTATGCGGCCAAGAAGACCGATCACTCCATCACCTACAAAAC,"Exon (Nrp2-201/Nrp2, exon 16 of 16)",1,62703285,62818695,115411,1,Nrp2-203,92570,Nrp2-203;Nrp2-204;Nrp2-201;Nrp2-205;Nrp2-202;Nrp2-206,Nrp2;Nrp2;Nrp2;Nrp2;Nrp2;Nrp2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,6,18187,ENSMUSG00000025969,conserved gene and region,1,62795721,62796077,357,*,357,25,0.613445378,0.766225962,0.070028011,1.81E-15,CpGisland,TRUE,U2,Pr-W
6254,cg27494453,-0.000113457,0.0000167,-6.797754999,5.46E-11,loss,yes,0.0000726,0.0000284,2.559631996,0.010952476,pos,ns,0.039125055,0.008307002,4.709888789,0.00000375,pos,ns,5.426513013,-0.001381354,0.000285677,-4.83536977,0.0000021,neg,ns,0.362554627,Hectd2,Hectd2_threeUTR,19,36609259,36609308,36609307,36609308,50,+,GCATAGCTTATGGGACTAGCTGTTTATAACAGCATCACCTTGGATATTCG,3' UTR,19,36554639,36621132,66494,1,Hectd2-202,54620,Hectd2-202;Hectd2-208;Hectd2-201;Hectd2-207;Hectd2-209;Hectd2-204,Hectd2;Hectd2;Hectd2;Hectd2;Hectd2;Hectd2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,2,226098,ENSMUSG00000041180,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1674,cg07771393,-0.0000015,0.00000109,-1.378354417,0.16908783,loss,ns,0.00000474,0.00000185,2.559615513,0.010952985,pos,ns,0.001486206,0.000542574,2.739178141,0.006515825,pos,ns,2.186030613,-0.0000305,0.0000187,-1.635495656,0.102960091,neg,ns,0.971958103,Gm26993,Gm26993_Intergenic_upstream,19,14241611,14241660,14241611,14241612,50,+,CGGAAAGGATTCCGCATCACTTACATGGTGTAAAGCTGGACAAATAAACA,Distal Intergenic,19,14017583,14018371,789,2,Gm26993-201,-223240,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,8,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18685,cg03712198,0.0000222,0.0000115,1.933999434,0.054023177,gain,ns,0.0000499,0.0000195,2.559606532,0.010953262,pos,ns,0.016812955,0.005715643,2.941568484,0.003511596,pos,ns,2.454495506,-0.000561789,0.00019656,-2.858095573,0.004550434,neg,ns,0.327880171,Skap1,Skap1_Intron,11,96736399,96736448,96736399,96736400,50,+,CGCTCTGCCTGAACATGAAATAGGAGCTAATATAAAAATCCATCTGCTGT,"Intron (Skap1-204/Skap1, intron 11 of 12)",11,96464593,96758941,294349,1,Skap1-204,271806,Skap1-204;Skap1-203;Skap1-209;Skap1-201,Skap1;Skap1;Skap1;Skap1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,40,46,78473,ENSMUSG00000057058,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
12290,cg02300610,-0.0000388,0.0000207,-1.870226335,0.062394642,loss,ns,-0.0000902,0.0000353,-2.559320392,0.010962091,neg,ns,-0.02730393,0.010327249,-2.643872535,0.008613311,neg,ns,2.064829854,0.000564753,0.000355153,1.59016682,0.112816465,pos,ns,0.909838604,Fign,Fign_Intergenic_downstream,2,63853346,63853395,63853394,63853395,50,+,ACTTCCCAGAAGTGTCCAACAAGAGAACTTTTGTTGAACATTTCTATACG,Distal Intergenic,2,63980447,64097988,117542,2,Fign-202,244593,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,28,84,60344,ENSMUSG00000075324,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
549,cg27246555,0.000057,0.00000772,7.384945912,1.42E-12,gain,yes,-0.0000336,0.0000131,-2.558683611,0.010981764,neg,ns,-0.006024396,0.003844635,-1.566961656,0.118143824,neg,ns,0.927588975,0.0000825,0.000132217,0.624256585,0.532918219,pos,ns,0.210987855,Dlx6,Dlx6_Intron,6,6869109,6869158,6869109,6869110,50,+,CGTCATACAAGCAGGAAGCCCCATACTGCGAGAATTAATGGCTACAGACC,"Intron (Dlx6os1-201/Dlx6os1-201, intron 2 of 2)",6,6863798,6865430,1633,1,Dlx6-204,5311,Dlx6-203;Dlx6-202;Dlx6-201;Dlx6-204,Dlx6;Dlx6;Dlx6;Dlx6,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,36,13396,ENSMUSG00000029754,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
14995,cg02056060,0.00000485,0.0000155,0.312217159,0.755085393,gain,ns,0.0000675,0.0000264,2.558342045,0.010992329,pos,ns,0.005760342,0.007726832,0.745498543,0.45653526,pos,ns,0.340525674,0.000340155,0.000265725,1.280101795,0.201466408,pos,ns,0.661591367,Pou4f2,Pou4f2_Intergenic_downstream,8,78422046,78422095,78422046,78422047,50,+,CGCTGCTAATGGAGCGCATAATGACGGCTAATTTTCGATCAGATATAAAT,Distal Intergenic,8,78433010,78436645,3636,2,Pou4f2-201,14550,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,23,18997,ENSMUSG00000031688,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
3550,cg04263029,0.0000332,0.00000654,5.080469496,0.000000652,gain,yes,-0.0000284,0.0000111,-2.558152653,0.010998192,neg,ns,-0.002414804,0.003256924,-0.741437058,0.458989787,neg,ns,0.338196978,0.000092,0.000112005,0.821048368,0.412249659,pos,ns,0.805219509,Agap3,Agap3_Intron,5,24490562,24490611,24490610,24490611,50,-,TGAATGTGGCTTAATCACACATCTTAATAGCTTTCCACGCTCTGAACTCG,"Intron (Agap3-201/Agap3, intron 10 of 17)",5,24452177,24502047,49871,1,Agap3-201,38385,Agap3-201;Agap3-202,Agap3;Agap3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,13,213990,ENSMUSG00000023353,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20756,cg23738088,0.00018262,0.0000257,7.096784413,8.73E-12,gain,yes,-0.000111833,0.0000437,-2.558142544,0.010998505,neg,ns,0.094790839,0.012807486,7.401205847,1.28E-12,pos,yes,11.89327837,-0.003119641,0.000440448,-7.082876358,9.52E-12,neg,yes,0.497290558,Prkaa2,Prkaa2_Exon,4,105036111,105036160,105036159,105036160,50,-,ATCAGACTGGCACACATTTCAAAAAAATCCATGGTGTGACTGCCCAGGCG,"Exon (Prkaa2-201/Prkaa2, exon 9 of 9)",4,105029874,105109890,80017,2,Prkaa2-201,73730,Prkaa2-201,Prkaa2,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,108079,ENSMUSG00000028518,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11214,cg16783010,0.0000351,0.0000107,3.288073317,0.00112472,gain,ns,-0.0000464,0.0000182,-2.557958825,0.011004194,neg,ns,-0.011893006,0.005317862,-2.236426426,0.026034923,neg,ns,1.584443697,0.000403955,0.000182881,2.208844352,0.027916681,pos,ns,0.891233994,Ablim1,Ablim1_Exon,19,57051217,57051266,57051217,57051218,50,-,CGCTGGACGGCTCATTGCCTCCAATGAGAAGAATGGAAAAAACAAAATGA,"Exon (Ablim1-201/Ablim1, exon 16 of 26)",19,57032733,57216032,183300,2,Ablim1-201,164766,Ablim1-201;Ablim1-207;Ablim1-203;Ablim1-202;Ablim1-213;Ablim1-206;Ablim1-205;Ablim1-210;Ablim1-212;Ablim1-211;Ablim1-209;Ablim1-208;Ablim1-221;Ablim1-219,Ablim1;Ablim1;Ablim1;Ablim1;Ablim1;Ablim1;Ablim1;Ablim1;Ablim1;Ablim1;Ablim1;Ablim1;Ablim1;Ablim1,0;0;0;0;0;0;0;0;0;0;0;0;0;-3979,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,4,226251,ENSMUSG00000025085,conserved gene and region,19,57051160,57051225,66,*,66,7,0.681818182,1.166666667,0.106060606,0.00000889,CpGisland,TRUE,U11,Tr-P
1987,cg18324647,-0.0000227,0.00000656,-3.458729633,0.000618684,loss,ns,-0.0000285,0.0000111,-2.557838001,0.011007937,neg,ns,-0.004865299,0.00326493,-1.490169212,0.137196482,neg,ns,0.862657026,-0.000465385,0.000112281,-4.144838804,0.0000439,neg,ns,0.789256195,Strn4,Strn4_threeUTR,7,16831517,16831566,16831565,16831566,50,+,GGAGGTGAGCCTGGGGGACTTGGCAGATCTCACCGTCACCAACGACAACG,3' UTR,7,16815889,16840931,25043,1,Strn4-201,15628,Strn4-201;Strn4-202;Strn4-211;Strn4-213;Strn4-209;Strn4-203;Strn4-205;Strn4-214;Strn4-207;Strn4-204;Strn4-206,Strn4;Strn4;Strn4;Strn4;Strn4;Strn4;Strn4;Strn4;Strn4;Strn4;Strn4,0;0;15139;0;7459;0;1383;0;-1048;-1599;-4662,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,2,97387,ENSMUSG00000030374,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16066,cg10746994,0.000000975,0.00000148,0.658040391,0.511000536,gain,ns,0.00000644,0.00000252,2.557569499,0.011016259,pos,ns,0.003066345,0.000737558,4.157430742,0.0000417,pos,ns,4.379908533,-0.0000562,0.0000254,-2.214381996,0.027529698,neg,ns,0.960656653,Acaca,Acaca_Intron,11,84349878,84349927,84349878,84349879,50,+,CGCTGCAGCTCCGGTGGAAATAATAAGATATAAACCACGAGGTTGTTATT,"Intron (Acaca-202/Acaca, intron 45 of 55)",11,84173122,84401651,228530,1,Acaca-202,176756,Acaca-202;Acaca-201,Acaca;Acaca,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,28,28,107476,ENSMUSG00000020532,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3287,cg22307154,-0.00000411,0.0000019,-2.16803636,0.030916482,loss,ns,0.00000823,0.00000322,2.557189243,0.011028055,pos,ns,0.001311407,0.000943285,1.390255818,0.165448566,pos,ns,0.781336992,-0.0000445,0.0000324,-1.370346787,0.171570186,neg,ns,0.944152397,Usp34,Usp34_Exon,11,23473235,23473284,23473235,23473236,50,+,CGGCCTCCGCGCCCTGAACTCAATATGTGCCTCTTGCCCACAATGGTGGA,"Exon (Usp34-208/Usp34, exon 74 of 80)",11,23306895,23490560,183666,1,Usp34-208,166340,Usp34-208;Usp34-205;Usp34-202,Usp34;Usp34;Usp34,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,13,14,17847,ENSMUSG00000056342,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10544,cg13745446,-0.0000123,0.00000437,-2.812494452,0.005229459,loss,ns,-0.000019,0.00000743,-2.557109741,0.011030523,neg,ns,-0.003583395,0.002177291,-1.645804681,0.100817428,neg,ns,0.996464387,0.0000141,0.0000749,0.187806359,0.85115132,pos,ns,0.927062862,Adra2a,Adra2a_Intergenic_downstream,19,54185931,54185980,54185931,54185932,50,-,CGCTTAAAATTCAGTTGGAATTTATAAGCTGATGAAACAGGTGTTCTTGG,Distal Intergenic,19,54045260,54048980,3721,1,Adra2a-202,140720,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,11551,ENSMUSG00000033717,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14027,cg24823649,-0.00000135,0.00000129,-1.049628922,0.294706338,loss,ns,0.00000558,0.00000218,2.556835848,0.011039028,pos,ns,0.000642896,0.000639558,1.005219068,0.315575354,pos,ns,0.500896922,-0.0000211,0.000022,-0.960930754,0.337335889,neg,ns,0.967936373,Slco3a1,Slco3a1_Exon,7,74284414,74284463,74284462,74284463,50,+,GCAAAGAACTCACTGGTGCTCAGCCCGCCCTCGTGGTTTTTGATGTAGCG,"Exon (Slco3a1-202/Slco3a1, exon 10 of 11)",7,74275419,74554633,279215,2,Slco3a1-202,270170,Slco3a1-202;Slco3a1-201,Slco3a1;Slco3a1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,108116,ENSMUSG00000025790,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27274,cg20374928,0.000120755,0.0000117,10.34764124,9.45E-22,gain,yes,-0.0000507,0.0000198,-2.555821927,0.011070563,neg,ns,0.008542824,0.005808207,1.47081959,0.142354205,pos,ns,0.8466297,-0.000444141,0.000199744,-2.223553694,0.026898984,neg,ns,0.248408787,Srsf6,Srsf6_Exon,2,162932884,162932933,162932932,162932933,50,-,TCCATACATTGTGTGACCCTTGCCCTATGACCCTTTGGCTGACCTTACCG,"Exon (Srsf6-204/Srsf6, exon 2 of 5)",2,162931528,162935208,3681,1,Srsf6-204,1356,Srsf6-204;Srsf6-203;Srsf6-201;Srsf6-202,Srsf6;Srsf6;Srsf6;Srsf6,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,4,67996,ENSMUSG00000016921,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U4,Pr-F
9132,cg19470875,0.00000297,0.00000174,1.707248632,0.088777119,gain,ns,-0.00000756,0.00000296,-2.55573057,0.011073408,neg,ns,0.000289916,0.000866242,0.334682663,0.738090813,pos,ns,0.1318902,-0.00000939,0.0000298,-0.315210158,0.75281417,neg,ns,0.950048964,Taf5,Taf5_Exon,19,47071070,47071119,47071118,47071119,50,+,TACTATAGTGGACTGAAACACTTCATTGAATGTTCCCTGGACTGCCATCG,"Exon (Taf5-201/Taf5, exon 2 of 11)",19,47067746,47083479,15734,1,Taf5-201,3324,Taf5-201,Taf5,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,10,226182,ENSMUSG00000025049,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20653,cg01079466,-0.0000547,0.00000668,-8.180359806,7.38E-15,loss,yes,-0.000029,0.0000114,-2.555486084,0.011081026,neg,ns,0.009303074,0.003325599,2.797413112,0.005473504,pos,ns,2.261734526,-0.000601651,0.000114367,-5.260705651,0.000000268,neg,yes,0.842470478,Kansl1,Kansl1_Exon,11,104338165,104338214,104338165,104338166,50,+,CGAGTTGTTGCAGCAACAGACATTGGGATGACAATGTTGTTAATATCAAA,"Exon (Kansl1-205/Kansl1, exon 10 of 14)",11,104333229,104442291,109063,2,Kansl1-205,104077,Kansl1-205;Kansl1-204;Kansl1-201;Kansl1-203;Kansl1-202,Kansl1;Kansl1;Kansl1;Kansl1;Kansl1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,11,76719,ENSMUSG00000018412,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25858,cg09067976,0.0000402,0.0000204,1.969611824,0.049772953,gain,ns,0.0000885,0.0000346,2.554921347,0.01109864,pos,ns,0.027621621,0.01014767,2.721966705,0.006856537,pos,ns,2.163895184,-0.000556126,0.000348978,-1.593588072,0.112047375,neg,ns,0.416026932,Pax7,Pax7_Intron,4,139818176,139818225,139818224,139818225,50,-,CTCGGGATAATGGGGGCTCTTTGTGGCCTAATCAGCCTCCTGAGGGGCCG,"Intron (Pax7-201/Pax7, intron 4 of 8)",4,139737062,139833528,96467,2,Pax7-201,15303,Pax7-201;Pax7-202,Pax7;Pax7,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,27,18509,ENSMUSG00000028736,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
22826,cg16702105,0.000115164,0.00000988,11.65798578,2.75E-26,gain,yes,-0.0000429,0.0000168,-2.5548068,0.011102216,neg,ns,-0.005304966,0.004916677,-1.078973845,0.281438186,neg,ns,0.550616977,0.000219271,0.000169084,1.29681395,0.195659614,pos,ns,0.188914051,Faah,Faah_Intron,4,115979573,115979622,115979621,115979622,50,-,CTCCTTTCAGTTGATAATTCATGGCTTGCATATGCGCTTTAATGCGGGCG,"Intron (Faah-202/Faah, intron 13 of 14)",4,115967145,116017675,50531,2,Faah-202,38053,Faah-202,Faah,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,20,14073,ENSMUSG00000034171,mapped to different genes,4,115979607,115979774,168,*,168,25,0.785714286,0.969752944,0.148809524,3.68E-24,CpGisland,TRUE,U3,Pr-B
25656,cg18633852,-0.00000713,0.00000642,-1.110889493,0.267476793,loss,ns,0.0000279,0.0000109,2.554201266,0.011121136,pos,ns,-0.006207238,0.003195581,-1.942443983,0.05298875,neg,ns,1.275816324,0.000166044,0.000109896,1.510918736,0.131827801,pos,ns,0.844178402,1110002E22Rik,1110002E22Rik_Exon,3,138066624,138066673,138066624,138066625,50,-,CGTGCAAAGCAAAACATTATTTATGCTGCCAAGCATGAAGGCGACATGAG,"Exon (1110002E22Rik-201/1110002E22Rik, exon 1 of 2)",3,138065052,138081506,16455,1,1110002E22Rik-201,1572,1110002E22Rik-201;1110002E22Rik-202;Gm5105-201,1110002E22Rik;1110002E22Rik;Gm5105,0;-4924;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,7,102634333,ENSMUSG00000090066,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1791,cg09249640,-0.00002,0.00000621,-3.221372588,0.001411332,loss,ns,0.000027,0.0000106,2.554129213,0.011123389,pos,ns,0.00415591,0.003091704,1.34421367,0.179862163,pos,ns,0.745060189,-0.000239564,0.000106323,-2.253160734,0.024947777,neg,ns,0.885220542,Foxp2,Foxp2_Intron,6,15203386,15203435,15203434,15203435,50,+,ATATATTACATGGTTTCATGGAATTTACAGTTCACTCCTGCAGTAACTCG,"Intron (Foxp2-207/Foxp2, intron 4 of 18)",6,14901349,15441977,540629,1,Foxp2-207,302037,Foxp2-207;Foxp2-213;Foxp2-208;Foxp2-211;Foxp2-203;Foxp2-205;Foxp2-204;Foxp2-201;Foxp2-210;Foxp2-214;Foxp2-212;Foxp2-209;Foxp2-202,Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,38,65,114142,ENSMUSG00000029563,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27237,cg01042193,0.0000446,0.00000874,5.099836349,0.000000593,gain,yes,0.0000379,0.0000148,2.553849509,0.01113214,pos,ns,0.013067374,0.004349951,3.004027784,0.002881493,pos,ns,2.540382506,0.00000682,0.000149594,0.045601443,0.96365728,pos,ns,0.384456353,Rai2,Rai2_fiveUTR,X,161717722,161717771,161717722,161717723,50,-,CGCCTTCCAGGCCCTTCGAAAGATGGATTCTGTTGACGTATCTGGCGGCC,Promoter (<=1kb),20,161717069,161779494,62426,1,Rai2-202,653,Rai2-202;Rai2-201,Rai2;Rai2,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,5,24004,ENSMUSG00000043518,conserved gene and region,X,161716877,161718077,1201,*,1201,97,0.691923397,0.676607929,0.080766028,4.75E-64,CpGisland,TRUE,NA,NRS
7306,cg05497416,-0.00000344,0.0000136,-0.252509013,0.800814992,loss,ns,0.0000591,0.0000232,2.553626558,0.011139119,pos,ns,0.029722028,0.006785394,4.380295296,0.0000162,pos,ns,4.789567048,-0.0006244,0.000233349,-2.675817795,0.007850873,neg,ns,0.360041072,Gm8176,Gm8176_Intergenic_upstream,1,42243136,42243185,42243184,42243185,50,-,GTTATTGAGCTGCCTTCTTTCCCTGTGTTGCCAAACCTGCATCATTTCCG,Distal Intergenic,1,42179290,42180388,1099,2,Gm8176-201,-62797,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,13,17,666582,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23591,cg14933452,-0.000014,0.00000888,-1.580885637,0.114923919,loss,ns,0.0000385,0.0000151,2.553599131,0.011139978,pos,ns,-0.012544949,0.004419168,-2.838758382,0.004827925,neg,ns,2.316239527,0.000458393,0.000151975,3.016241883,0.002771118,pos,ns,0.823674894,Med13l,Med13l_Intergenic_downstream,5,119143709,119143758,119143709,119143710,50,-,CGGAAAGCAAATAACCCCAAATGAGAAGATTGGATTTAGTGTGGTCTGGA,Distal Intergenic,5,118750387,118763916,13530,1,Med13l-206,393371,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,16,76199,ENSMUSG00000018076,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8921,cg26766294,-0.000000762,0.000004,-0.190695843,0.848888719,loss,ns,-0.0000173,0.00000679,-2.553414474,0.011145762,neg,ns,-0.005652767,0.001989347,-2.841518147,0.004787402,neg,ns,2.319900069,0.0000584,0.0000684,0.853847395,0.393848851,pos,ns,0.861836863,Dlk2,Dlk2_threeUTR,17,46302577,46302626,46302625,46302626,50,+,ACCATCAACCTGGATGACTGTGCCAGCCGCCCATGCCAGAGAGGGGCCCG,3' UTR,17,46297421,46303271,5851,1,Dlk2-201,5156,Abcc10-204;Abcc10-207;Abcc10-201;Abcc10-202;Dlk2-205;Dlk2-201;Dlk2-202;Dlk2-203;Dlk2-204,Abcc10;Abcc10;Abcc10;Abcc10;Dlk2;Dlk2;Dlk2;Dlk2;Dlk2,25397;25350;25353;23140;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,3,106565,ENSMUSG00000047428,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
839,cg01340046,-0.0000481,0.0000174,-2.759272708,0.006137451,loss,ns,0.0000757,0.0000296,2.553050383,0.011157175,pos,ns,0.045374715,0.008684701,5.224672238,0.000000321,pos,ns,6.493639201,-0.001501827,0.000298666,-5.028446905,0.000000838,neg,yes,0.296204891,Nxph1,Nxph1_Exon,6,8952170,8952219,8952218,8952219,50,-,AAACCGTTTTCCACTCATTACAACAACAGTGCTGGATTTATTCTAATGCG,"Exon (Nxph1-203/Nxph1, exon 3 of 3)",6,8948431,8952430,4000,1,Nxph1-203,3739,Nxph1-203;Nxph1-202;Nxph1-201,Nxph1;Nxph1;Nxph1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,12,18231,ENSMUSG00000046178,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
11265,cg18442545,-0.00000503,0.00000262,-1.91604943,0.056278322,loss,ns,0.0000114,0.00000446,2.552663732,0.011169306,pos,ns,0.003616959,0.0013061,2.769281664,0.005956504,pos,ns,2.225008577,-0.00010392,0.0000449,-2.3136176,0.021342612,neg,ns,0.952371228,Gm17994,Gm17994_Intergenic_downstream,8,57254734,57254783,57254782,57254783,50,-,AATGTCAAAGAAACTTTTTGACACTTCATACATTTGAGCAAGCTTAGCCG,Distal Intergenic,8,57291520,57292052,533,2,Gm17994-201,37318,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,3,100416239,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23345,cg15055738,0.000128654,0.0000271,4.753222932,0.00000307,gain,ns,-0.000117369,0.000046,-2.552462674,0.011175619,neg,ns,0.010897993,0.013471357,0.808975136,0.419149884,pos,ns,0.37763065,0.00049712,0.000463279,1.07304772,0.284084288,pos,ns,0.121607081,Socs3,Socs3_fiveUTR,11,117968210,117968259,117968258,117968259,50,+,AAACTTGCTGTGGGTGACCATGGCGCACGGAGCCAGCGTGGATCTGCGCG,Promoter (<=1kb),11,117966079,117969186,3108,2,Socs3-201,927,Socs3-201;Socs3-202;Socs3-203,Socs3;Socs3;Socs3,0;1788;1192,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,9,12702,ENSMUSG00000053113,conserved gene and region,11,117967759,117969258,1500,*,1500,136,0.671333333,0.805559943,0.090666667,1.37E-96,CpGisland,TRUE,NA,NRS
19987,cg18576402,-0.000017,0.00000414,-4.106870776,0.0000514,loss,ns,0.000018,0.00000704,2.551665102,0.011200692,pos,ns,0.000438608,0.002062519,0.212656436,0.831734715,pos,ns,0.080015171,-0.0000982,0.0000709,-1.384644145,0.167157081,neg,ns,0.943758579,Dusp3,Dusp3_threeUTR,11,101974763,101974812,101974811,101974812,50,+,GTCTGTCATTGAGCTGGCAGAGCTGGGCCAGGAAGCCATCGTTGGGGCCG,3' UTR,11,101971143,101983503,12361,2,Dusp3-206,8691,Dusp3-206;Dusp3-201;Dusp3-202;Dusp3-203;Dusp3-204;Dusp3-205,Dusp3;Dusp3;Dusp3;Dusp3;Dusp3;Dusp3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,3,72349,ENSMUSG00000003518,mapped to different genes,11,101974802,101974960,159,*,159,12,0.591194969,0.865306122,0.075471698,0.000000048,CpGisland,TRUE,U10,Tr-S
6367,cg15377754,-0.0000242,0.00000823,-2.940351762,0.003525035,loss,ns,0.0000357,0.000014,2.551601311,0.011202699,pos,ns,0.020727964,0.004098142,5.057893532,0.000000727,pos,ns,6.138434755,-0.000561982,0.000140935,-3.987530874,0.0000833,neg,ns,0.744665707,Cpeb3,Cpeb3_threeUTR,19,37021882,37021931,37021930,37021931,50,-,TTTTTTATACAAACAGTACAAACAGTATTGCACATAACAACAAATAGTCG,3' UTR,19,37021291,37207462,186172,2,Cpeb3-201,185531,Cpeb3-201;Cpeb3-203;Cpeb3-212;Cpeb3-210;Cpeb3-204;Cpeb3-208;Cpeb3-202,Cpeb3;Cpeb3;Cpeb3;Cpeb3;Cpeb3;Cpeb3;Cpeb3,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,9,208922,ENSMUSG00000039652,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6496,cg08356801,-0.00000528,0.00000347,-1.520480581,0.129409515,loss,ns,0.0000151,0.0000059,2.551429704,0.011208102,pos,ns,0.003190091,0.001728581,1.845497017,0.065918757,pos,ns,1.180990989,-0.0000615,0.0000594,-1.034209623,0.301844287,neg,ns,0.919008498,Zfp536,Zfp536_Intron,7,37515720,37515769,37515768,37515769,50,+,CTGCATTCAGCAATACATTTGGGCCATTTCCAAGTCAATTAAGGAAAACG,"Intron (Zfp536-211/Zfp536, intron 1 of 3)",7,37318024,37568390,250367,2,Zfp536-211,52621,Zfp536-211;Zfp536-202;Zfp536-201;Zfp536-203;Zfp536-206,Zfp536;Zfp536;Zfp536;Zfp536;Zfp536,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,73,112,243937,ENSMUSG00000043456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
431,cg25898064,-0.00000374,0.00000954,-0.392206817,0.695174916,loss,ns,0.0000414,0.0000162,2.551369463,0.011209998,pos,ns,-0.004320785,0.004749152,-0.909801365,0.363634098,neg,ns,0.4393354,-0.0000166,0.000163323,-0.101556631,0.919174259,neg,ns,0.647313675,Gm8797,Gm8797_Intergenic_downstream,3,5754962,5755011,5754962,5754963,50,+,CGCCTGACATTTCATTCTAATTAACAGTAGGGTTAATTGTTCTGGCAGGC,Distal Intergenic,3,5750806,5751295,490,1,Gm8797-201,4156,Gm8797-201,Gm8797,4156,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,4,667759,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5046,cg04175952,-0.0000262,0.0000103,-2.541195663,0.011534505,loss,ns,0.0000447,0.0000175,2.551119558,0.011217871,pos,ns,0.012036342,0.0051318,2.345442672,0.019634682,pos,ns,1.706976137,-0.000460567,0.000176482,-2.609710388,0.00950166,neg,ns,0.824116312,Gmds,Gmds_Intron,13,32005449,32005498,32005449,32005450,50,-,CGTCATAAGTGTGTAATGTCTTGAACCAAAATAGACTTCCTTAATGATTT,"Intron (Gmds-201/Gmds, intron 7 of 10)",13,31819579,32338740,519162,2,Gmds-201,333242,Gmds-201,Gmds,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,5,218138,ENSMUSG00000038372,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13956,cg08720341,-0.0000124,0.00000541,-2.288238678,0.022796414,loss,ns,0.0000234,0.00000919,2.550755236,0.011229356,pos,ns,0.006145376,0.002692244,2.282621786,0.023129616,pos,ns,1.635831585,-0.000214122,0.0000926,-2.312680339,0.021394824,neg,ns,0.895688909,Chn1,Chn1_fiveUTR,2,73679866,73679915,73679866,73679867,50,+,CGTAGTAGAGCCTGAAGTTTCTGGTTTGACTTCCAAATCTGCCTCAATGA,5' UTR,2,73610660,73775346,164687,2,Chn1-203,95431,Chn1-203;Chn1-210;Chn1-209;Chn1-204;Chn1-213;Chn1-207;Chn1-211;Chn1-205,Chn1;Chn1;Chn1;Chn1;Chn1;Chn1;Chn1;Chn1,0;0;0;0;0;0;-241;0,TRUE,FALSE,FALSE,TRUE,TRUE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,4,108699,ENSMUSG00000056486,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5549,cg25471194,0.0000595,0.00000721,8.244311653,4.76E-15,gain,yes,-0.0000312,0.0000123,-2.550152013,0.011248397,neg,ns,0.007713106,0.003589737,2.148654832,0.032436042,pos,ns,1.488972141,-0.000222736,0.000123451,-1.804251068,0.072162461,neg,ns,0.23247298,Pbx3,Pbx3_Intron,2,34235771,34235820,34235819,34235820,50,-,CTGACCTTTAATCTGATGCTAGTTTACTCTCATCACTGAAGTGGAAGTCG,"Intron (Pbx3-202/Pbx3, intron 2 of 7)",2,34171457,34372038,200582,2,Pbx3-202,136218,Pbx3-202;Pbx3-201;Pbx3-210;Pbx3-206;Pbx3-207;Pbx3-209;Pbx3-204;Pbx3-205;Pbx3-203,Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,82,18516,ENSMUSG00000038718,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
11693,cg02856943,0.000018,0.00000242,7.427743427,1.08E-12,gain,yes,-0.0000105,0.00000411,-2.550040151,0.011251931,neg,ns,-0.000530922,0.001204819,-0.440665552,0.659762271,neg,ns,0.180612523,0.0000711,0.0000414,1.71542051,0.087267367,pos,ns,0.940016109,Baz2b,Baz2b_Exon,2,59983891,59983940,59983939,59983940,50,-,TGGGTGGCTGACCATTGGGAAGGCACTCGACACTGTGGACAGGTTAAACG,"Exon (Baz2b-207/Baz2b, exon 5 of 6)",2,59899363,60125697,226335,2,Baz2b-202,141757,Baz2b-202;Baz2b-201;Baz2b-207;Baz2b-203,Baz2b;Baz2b;Baz2b;Baz2b,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,9,407823,ENSMUSG00000026987,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1601,cg25827457,-0.00000181,0.00000917,-0.197577737,0.843504943,loss,ns,-0.0000397,0.0000156,-2.54996081,0.011254438,neg,ns,-0.009692114,0.004564536,-2.123351436,0.034516315,neg,ns,1.46197558,-0.000177595,0.000156974,-1.131362522,0.258776986,neg,ns,0.85757705,Runx1t1,Runx1t1_Exon,4,13835636,13835685,13835684,13835685,50,+,GTACTGAGAAGCACTCCACAATGCCAGACTCACCTGTGGATGTGAAGACG,"Exon (Runx1t1-201/Runx1t1, exon 2 of 11)",4,13743436,13893649,150214,1,Runx1t1-201,92200,Runx1t1-201;Runx1t1-206;Runx1t1-204;Runx1t1-203;Runx1t1-202,Runx1t1;Runx1t1;Runx1t1;Runx1t1;Runx1t1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,24,12395,ENSMUSG00000006586,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4983,cg06263450,-0.0000167,0.00000432,-3.869964057,0.00013273,loss,ns,-0.0000187,0.00000733,-2.549133913,0.011280597,neg,ns,-0.003108057,0.002147627,-1.447205143,0.148849933,neg,ns,0.827251358,0.000158997,0.0000739,2.152776473,0.032107619,pos,ns,0.90902906,U2af1,U2af1_Exon,17,31652511,31652560,31652511,31652512,50,-,CGTCAGCCGTCTGTGCACTGTTTTGGGGATTACGATAGATGTTTTGAATC,"Exon (U2af1-202/U2af1, exon 3 of 8)",17,31647081,31658769,11689,2,U2af1-202,6209,U2af1-202;U2af1-201;U2af1-208;U2af1-209;U2af1-206;U2af1-207;U2af1-205;U2af1-203;U2af1-204,U2af1;U2af1;U2af1;U2af1;U2af1;U2af1;U2af1;U2af1;U2af1,0;0;0;0;-3199;0;0;0;6143,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,108121,ENSMUSG00000061613,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3064,cg13205056,-0.0000405,0.0000181,-2.237196363,0.025984016,loss,ns,0.0000783,0.0000307,2.548474214,0.011301506,pos,ns,0.005390602,0.009002793,0.598769994,0.549763549,pos,ns,0.259824059,0.000290894,0.000309605,0.939563123,0.348173201,pos,ns,0.329455662,Pou3f2,Pou3f2_Promoter,4,22496417,22496466,22496417,22496418,50,+,CGCAGAGGCTTGAACAATACGTGTTCAGAGAAAAGCAAAACACATTATTT,Promoter (8-9kb),4,22482780,22488366,5587,2,Pou3f2-201,-8051,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,18,18992,ENSMUSG00000095139,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
9306,cg08256909,0.000221637,0.000015,14.73770443,1.26E-37,gain,yes,-0.0000651,0.0000255,-2.548417568,0.011303303,neg,ns,0.015451384,0.007484942,2.064329345,0.039818121,pos,ns,1.399919234,-0.0001791,0.000257407,-0.69578558,0.487084403,neg,ns,0.547747572,Nr4a3,Nr4a3_fiveUTR,4,48049079,48049128,48049079,48049080,50,+,CGCTGGAGAGACCCCCAGCCCCACCATTCAGCGCGCAAGATACCCTCCAG,Promoter (<=1kb),4,48049114,48086447,37334,1,Nr4a3-203,0,Nr4a3-201;Nr4a3-204;Nr4a3-203;Nr4a3-202,Nr4a3;Nr4a3;Nr4a3;Nr4a3,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,20,18124,ENSMUSG00000028341,mapped to different genes,4,48048919,48049113,195,*,195,16,0.687179487,0.731707317,0.082051282,3.81E-11,CpGisland,TRUE,U13,Hc-P
2801,cg21583851,-0.0000411,0.0000121,-3.403702399,0.000752174,loss,ns,0.0000523,0.0000205,2.547611182,0.011328912,pos,ns,0.013071046,0.006013592,2.173583651,0.030493026,pos,ns,1.515799472,-0.00046687,0.000206807,-2.25751646,0.024671369,neg,ns,0.772612105,Slc26a5,Slc26a5_Exon,5,21834330,21834379,21834330,21834331,50,-,CGTTGAGGTTTTTAACATTCTGCAACACAGCAACTGTACTCTGTAACACA,"Exon (Slc26a5-202/Slc26a5, exon 6 of 18)",5,21810655,21861998,51344,2,Slc26a5-202,27619,Slc26a5-202;Slc26a5-201;Slc26a5-204;Slc26a5-203,Slc26a5;Slc26a5;Slc26a5;Slc26a5,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,80979,ENSMUSG00000029015,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21434,cg16882893,-0.000000568,0.00000232,-0.245007817,0.806612484,loss,ns,-0.00001,0.00000394,-2.547388859,0.011335982,neg,ns,0.000471801,0.001154734,0.408580351,0.683129746,pos,ns,0.165496804,-0.0000448,0.0000397,-1.129313308,0.259638799,neg,ns,0.940250488,Rbm5,Rbm5_Exon,9,107757068,107757117,107757068,107757069,50,-,CGGAAAAATCAGTGCTCTGGAATTAAATGGACAACATACGGGGAGGACCA,"Exon (Rbm5-219/Rbm5, exon 5 of 23)",9,107740371,107770996,30626,2,Rbm5-214,13879,Rbm5-214;Rbm5-219;Rbm5-224;Rbm5-210;Rbm5-201;Rbm5-211;Rbm5-217;Rbm5-212;Rbm5-221;Rbm5-220;Rbm5-223;Rbm5-208;Rbm5-203;Rbm5-204;Rbm5-218,Rbm5;Rbm5;Rbm5;Rbm5;Rbm5;Rbm5;Rbm5;Rbm5;Rbm5;Rbm5;Rbm5;Rbm5;Rbm5;Rbm5;Rbm5,0;0;0;0;0;0;-2978;-2466;0;0;0;0;0;13842;13828,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,11,83486,ENSMUSG00000032580,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
468,cg19624555,-0.0000567,0.000016,-3.531500739,0.000475973,loss,ns,-0.0000694,0.0000273,-2.547276214,0.011339565,neg,ns,0.061968325,0.007984588,7.760992045,1.23E-13,pos,yes,12.90924425,-0.001956059,0.000274589,-7.123578583,7.39E-12,neg,yes,0.74509788,Slc25a13,Slc25a13_Intron,6,6145413,6145462,6145461,6145462,50,+,TGCTCTCTGATACTACTATCTTTCAAAATTGAAGCCATTATGGTCAATCG,"Intron (Slc25a13-201/Slc25a13, intron 4 of 17)",6,6041218,6217118,175901,2,Slc25a13-201,71656,Slc25a13-201;Slc25a13-203;Slc25a13-205;Slc25a13-202,Slc25a13;Slc25a13;Slc25a13;Slc25a13,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,3,50799,ENSMUSG00000015112,conserved gene and region,6,6145461,6145651,191,*,191,11,0.544502618,0.779591837,0.057591623,0.000003,CpGisland,TRUE,NA,NRS
342,cg14113480,0.00000144,0.00000415,0.346960878,0.728856123,gain,ns,-0.000018,0.00000705,-2.547272533,0.011339682,neg,ns,-0.003860519,0.002065773,-1.868801289,0.062593381,neg,ns,1.203471588,-0.000109307,0.000071,-1.538625253,0.124915871,neg,ns,0.716240201,Arid1b,Arid1b_Intron,17,5212468,5212517,5212468,5212469,50,-,CGCAATGCATTATTTAGCTGGCTGTGTGATAGATGAGGGATGCGCAGAGT,"Intron (Arid1b-201/Arid1b, intron 4 of 18)",17,4994939,5343505,348567,1,Arid1b-201,217529,Arid1b-201;Arid1b-207;Arid1b-202;Arid1b-203,Arid1b;Arid1b;Arid1b;Arid1b,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,11,239985,ENSMUSG00000069729,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7953,cg05455896,0.0000555,0.00000521,10.638214,9.76E-23,gain,yes,-0.0000226,0.00000886,-2.545964444,0.01138137,neg,ns,-0.00103778,0.002595193,-0.39988544,0.68951629,neg,ns,0.161455469,0.000213369,0.0000892,2.390727783,0.017411485,pos,ns,0.111658601,Pax2,Pax2_Intergenic_upstream,19,44670297,44670346,44670345,44670346,50,+,GAAAATTCATCTAGAATTACATCTTATGTCATCATTATGTTTATTAAGCG,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-85699,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
26764,cg05031676,0.000165778,0.0000116,14.33390324,4.21E-36,gain,yes,-0.00005,0.0000196,-2.545905044,0.011383266,neg,ns,0.019856445,0.005756253,3.449543591,0.000639307,pos,ns,3.194290875,-0.000849144,0.000197957,-4.289536858,0.000024,neg,ns,0.280696473,Rps15a-ps7,Rps15a-ps7_Intergenic_downstream,2,152177366,152177415,152177414,152177415,50,-,GATTTCCTCCTGGAGCTTCCCTCAGCAAACAATGAGACAATGGCGAGCCG,Distal Intergenic,2,152185291,152185682,392,2,Rps15a-ps7-201,8316,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,100043843,NA,mapped to different genes,2,152177349,152177575,227,*,227,14,0.616740088,0.651897436,0.061674009,3.49E-08,CpGisland,TRUE,NA,NRS
20660,cg14411132,0.0000034,0.00000446,0.763641278,0.445661829,gain,ns,-0.0000193,0.00000758,-2.545724111,0.011389044,neg,ns,-0.006811577,0.002219223,-3.069352902,0.002334862,neg,ns,2.631738762,0.0000074,0.0000763,0.09702412,0.922769937,pos,ns,0.880774289,Adamts6,Adamts6_threeUTR,13,104375649,104375698,104375649,104375650,50,-,CGTGGTACTTGCCTTGATAATGAGCCTCCCAAGCGTGACTTTCTTTATCC,3' UTR,13,104287835,104496695,208861,1,Adamts6-207,87814,Adamts6-207;Adamts6-202;Adamts6-201;Adamts6-206;Adamts6-203;Adamts6-204;Adamts6-205,Adamts6;Adamts6;Adamts6;Adamts6;Adamts6;Adamts6;Adamts6,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,19,31,108154,ENSMUSG00000046169,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23496,cg00457583,0.0000107,0.0000071,1.509711215,0.132135681,gain,ns,-0.0000307,0.0000121,-2.544774952,0.011419396,neg,ns,0.00947654,0.003532727,2.682499932,0.00769929,pos,ns,2.11354931,-0.000365612,0.00012149,-3.00939845,0.002832472,neg,ns,0.832556218,Dpyd,Dpyd_threeUTR,3,118674558,118674607,118674558,118674559,50,-,CGAGAAGCAATGAGGTAAGTCTGGGTCACCATAGCAACAGTCACAGATGT,3' UTR,3,118562129,119432924,870796,1,Dpyd-201,112429,Dpyd-201;Dpyd-202;Dpyd-205;Dpyd-204,Dpyd;Dpyd;Dpyd;Dpyd,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,29,99586,ENSMUSG00000033308,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1047,cg11350655,0.0000133,0.0000127,1.050344901,0.29437768,gain,ns,0.0000547,0.0000215,2.544733992,0.011420707,pos,ns,0.00050151,0.006297755,0.079633105,0.936580446,pos,ns,0.028454914,0.000162445,0.000216579,0.750046793,0.453795383,pos,ns,0.814979792,Gm14481,Gm14481_Intergenic_upstream,X,11189670,11189719,11189670,11189671,50,+,CGTTGGGGTGCCTGCGTCTCAAATCACTGGCTCTGTGCAGCCTTGATGAG,Distal Intergenic,20,11220607,11221235,629,1,Gm14481-201,-30888,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,5,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13947,cg09962606,0.0000259,0.00000634,4.083550865,0.0000565,gain,ns,-0.0000274,0.0000108,-2.544230388,0.011436842,neg,ns,0.000599241,0.003157148,0.189804488,0.849586559,pos,ns,0.070792367,-0.000087,0.000108574,-0.800874619,0.423817607,neg,ns,0.77434295,Smad4,Smad4_Exon,18,73658616,73658665,73658616,73658617,50,+,CGTTTTGGTGGTGAGGCAAATTAGGTGTGTATGGTGCAGTCCTACTTCCA,"Exon (Smad4-201/Smad4, exon 7 of 12)",18,73639009,73703780,64772,2,Smad4-201,45115,Smad4-201;Smad4-202;Smad4-205;Smad4-203,Smad4;Smad4;Smad4;Smad4,0;0;0;16453,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,17128,ENSMUSG00000024515,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3255,cg25558559,-0.00000516,0.00000465,-1.109930094,0.267889378,loss,ns,0.0000201,0.0000079,2.544225151,0.01143701,pos,ns,0.008550686,0.002314933,3.693708236,0.000261147,pos,ns,3.583115219,-0.000223203,0.0000796,-2.803688445,0.005370729,neg,ns,0.928081123,Kcnma1,Kcnma1_Intron,14,23373797,23373846,23373797,23373798,50,-,CGCAGTAAAAGCTTTAACAGGCTGCACTTTAAATATTTTAGCAATTTGCC,"Intron (Kcnma1-207/Kcnma1, intron 19 of 27)",14,23289431,23803304,513874,2,Kcnma1-207,429458,Kcnma1-207;Kcnma1-210;Kcnma1-205;Kcnma1-201;Kcnma1-208;Kcnma1-209;Kcnma1-212;Kcnma1-204;Kcnma1-202;Kcnma1-211;Kcnma1-229;Kcnma1-234;Kcnma1-223;Kcnma1-214;Kcnma1-216;Kcnma1-219;Kcnma1-220;Kcnma1-224;Kcnma1-233;Kcnma1-236;Kcnma1-237;Kcnma1-213;Kcnma1-228;Kcnma1-203;Kcnma1-206;Kcnma1-221;Kcnma1-225;Kcnma1-226;Kcnma1-230;Kcnma1-235,Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,41,16531,ENSMUSG00000063142,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2128,cg05461995,-0.0000149,0.00000512,-2.90412683,0.003947337,loss,ns,0.0000221,0.0000087,2.544126051,0.011440188,pos,ns,0.005836483,0.002547609,2.290965514,0.02263617,pos,ns,1.645197047,-0.000215713,0.0000876,-2.462138867,0.014354971,neg,ns,0.896401088,Gm18532,Gm18532_Intergenic_downstream,15,18054300,18054349,18054348,18054349,50,-,TGTGTCGCATATTTCCAGAAAATCAATTTATTTTCAGTAACTTGGGAGCG,Distal Intergenic,15,18007430,18007845,416,1,Gm18532-201,46919,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,100417322,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5733,cg01033486,0.00000483,0.00000601,0.803695104,0.422188915,gain,ns,0.000026,0.0000102,2.543910334,0.011447107,pos,ns,0.002715549,0.002992848,0.907345918,0.364928665,pos,ns,0.437792021,0.0000735,0.000102924,0.714099175,0.475703177,pos,ns,0.103085358,Sox2,Sox2_Promoter,3,34640775,34640824,34640823,34640824,50,-,ATTTAGCCTTTAATCTCTTTTTATCCACGAAGACTAAAGCTCTGTACTCG,Promoter (9-10kb),3,34650405,34652461,2057,1,Sox2-201,-9630,NA,NA,NA,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,7,62,20674,ENSMUSG00000074637,mapped to different genes,3,34640800,34640945,146,*,146,19,0.671232877,1.163102725,0.130136986,3.83E-17,CpGisland,TRUE,U13,Hc-P
19152,cg24615765,-0.0000382,0.00000791,-4.83407845,0.00000211,loss,ns,0.0000342,0.0000134,2.543720655,0.011453195,pos,ns,-0.007577093,0.003938086,-1.924054796,0.055263021,neg,ns,1.257565374,0.0000853,0.00013543,0.629902598,0.529222307,pos,ns,0.80220024,Mrps22,Mrps22_Intergenic_upstream,9,98671862,98671911,98671910,98671911,50,-,AATTAGATTACAAGCATCGCCTGGTGAGCTATACGCCAGCACATTTGGCG,Distal Intergenic,9,98588730,98601660,12931,2,Mrps22-201,-70251,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,6,64655,ENSMUSG00000032459,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24025,cg07087497,-0.00000491,0.00000575,-0.853996905,0.393766134,loss,ns,0.0000248,0.00000976,2.543720487,0.0114532,pos,ns,0.008592553,0.002859481,3.004934765,0.00287316,pos,ns,2.541640213,-0.000259198,0.0000983,-2.635806883,0.008816043,neg,ns,0.915408876,Ctdspl2,Ctdspl2_Exon,2,121988765,121988814,121988813,121988814,50,+,AATTTTCTTAAAATCTGATTTATAGCTATTATTTCATCAAACATGTCCCG,"Exon (Ctdspl2-201/Ctdspl2, exon 7 of 13)",2,121956001,122013642,57642,1,Ctdspl2-201,32764,Ctdspl2-201;Ctdspl2-204;Ctdspl2-208;Ctdspl2-209;Ctdspl2-207;Ctdspl2-206;Ctdspl2-203;Ctdspl2-202;Ctdspl2-205,Ctdspl2;Ctdspl2;Ctdspl2;Ctdspl2;Ctdspl2;Ctdspl2;Ctdspl2;Ctdspl2;Ctdspl2,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,8,329506,ENSMUSG00000033411,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4032,cg17072947,-0.0000408,0.0000122,-3.336406389,0.000951915,loss,ns,0.0000529,0.0000208,2.542274607,0.011499698,pos,ns,0.005783381,0.006091239,0.949458797,0.343126914,pos,ns,0.464545216,-0.000299679,0.000209477,-1.430602081,0.153551487,neg,ns,0.606307113,Gm18089,Gm18089_Intergenic_upstream,18,26572886,26572935,26572886,26572887,50,+,CGTGAAGTCATTCTGATGAAAGATTACTCAGGAGCCTTCATTACTGAGTG,Distal Intergenic,18,27008674,27009328,655,1,Gm18089-201,-435739,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,5,100416384,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5891,cg08500171,0.000074,0.0000116,6.358851277,7.27E-10,gain,yes,-0.0000503,0.0000198,-2.54225031,0.01150048,neg,ns,0.001525839,0.005795434,0.263282947,0.792507411,pos,ns,0.100996668,-0.000129928,0.000199304,-0.651909101,0.514942849,neg,ns,0.51300533,Prrc2a,Prrc2a_fiveUTR,17,35162875,35162924,35162875,35162876,50,+,CGGGTTTCTGGATCTCTAAGGACTTGCCCTTATACGTATCAAACAGGTTG,5' UTR,17,35149076,35164897,15822,2,Prrc2a-201,1973,Prrc2a-201;Prrc2a-206;Prrc2a-203,Prrc2a;Prrc2a;Prrc2a,0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,13,53761,ENSMUSG00000024393,conserved gene but different region,17,35162847,35163042,196,*,196,12,0.556122449,0.8,0.06122449,0.000000472,CpGisland,TRUE,NA,NRS
17552,cg15503058,-0.00000482,0.00000301,-1.600928476,0.110411292,loss,ns,0.000013,0.00000512,2.542171151,0.011503031,pos,ns,0.001774477,0.001499648,1.183262455,0.237611764,pos,ns,0.624132062,-0.0000682,0.0000516,-1.321983368,0.187148332,neg,ns,0.919151324,Anks1b,Anks1b_threeUTR,10,90948559,90948608,90948559,90948560,50,+,CGTAATATCTCCTGTGCTGCCCAGGACCCAGAAGACCTCTCAACATTTGC,3' UTR,10,89873509,90970219,1096711,1,Anks1b-233,1075050,Anks1b-233;Anks1b-222;Anks1b-214;Anks1b-208;Anks1b-210;Anks1b-221;Anks1b-219;Anks1b-213;Anks1b-216;Anks1b-224;Anks1b-231;Anks1b-218;Anks1b-217;Anks1b-201;Anks1b-225;Anks1b-205;Anks1b-204;Anks1b-202;Anks1b-228,Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,14,77531,ENSMUSG00000058589,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10351,cg15006883,-0.000027,0.00000993,-2.716327408,0.00697162,loss,ns,0.0000429,0.0000169,2.542153683,0.011503594,pos,ns,0.011860223,0.004941903,2.399930571,0.016987824,pos,ns,1.769862256,-0.000388802,0.000169952,-2.287721472,0.022826919,neg,ns,0.863655912,Prpf40a,Prpf40a_threeUTR,2,53145864,53145913,53145864,53145865,50,+,CGTGCTTTAAGATCCTCAACATAAAACTTGAAAAGATCAAGTGCAGTTGA,3' UTR,2,53134704,53191225,56522,2,Prpf40a-201,45312,Prpf40a-201;Prpf40a-208;Prpf40a-211;Prpf40a-204;Prpf40a-206;Prpf40a-210,Prpf40a;Prpf40a;Prpf40a;Prpf40a;Prpf40a;Prpf40a,0;0;0;-555;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,2,56194,ENSMUSG00000061136,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9625,cg00240737,-0.0000332,0.00000873,-3.807850573,0.000168968,loss,ns,0.0000377,0.0000148,2.542112583,0.011504919,pos,ns,0.0000254,0.004344209,0.005842527,0.995342122,pos,ns,0.002027616,-0.00000746,0.000149397,-0.04990443,0.960230685,neg,ns,0.726727734,Grik2,Grik2_Exon,10,49573632,49573681,49573632,49573633,50,+,CGGCTGAGTGAAGAGAAGTCTGGGTAGAGACTGACATAGAAGGAATCTTT,"Exon (Grik2-207/Grik2, exon 4 of 17)",10,49094833,49788766,693934,2,Grik2-207,215085,Grik2-207;Grik2-202;Grik2-205;Grik2-204;Grik2-201;Grik2-210,Grik2;Grik2;Grik2;Grik2;Grik2;Grik2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,12,14806,ENSMUSG00000056073,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2242,cg19840473,0.0000929,0.0000143,6.475788441,3.69E-10,gain,yes,-0.000062,0.0000244,-2.542045467,0.011507082,neg,ns,0.026944497,0.007141792,3.772792394,0.000193363,pos,ns,3.713626796,-0.00106172,0.000245606,-4.322867251,0.0000208,neg,ns,0.450716994,Gm12024,Gm12024_Intergenic_upstream,11,18748112,18748161,18748112,18748113,50,-,CGACAGCTAAGGAACCAGTTTGGCGTCTGGTTTGTCTGTTGTTTTACTGC,Distal Intergenic,11,18577227,18578479,1253,2,Gm12024-201,-169682,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,12,100417654,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11642,cg08982699,-0.000078,0.0000131,-5.955478525,7.03E-09,loss,yes,0.0000565,0.0000222,2.541564826,0.011522585,pos,ns,-0.010116851,0.00651602,-1.552612137,0.121536108,neg,ns,0.915294676,0.000173282,0.000224085,0.773283536,0.439943835,pos,ns,0.518974818,Celf6,Celf6_Intron,9,59589194,59589243,59589242,59589243,50,+,GTAGCACTTGTGGCTATGGTAACAGGAAGCTGCCTGTTGTCTCGGCAACG,"Intron (Celf6-207/Celf6, intron 2 of 10)",9,59577917,59607292,29376,1,Celf6-207,11277,Celf6-207;Celf6-203;Celf6-205;Celf6-201;Celf6-204;Celf6-202,Celf6;Celf6;Celf6;Celf6;Celf6;Celf6,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,8,76183,ENSMUSG00000032297,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
15575,cg01288470,0.00000248,0.00000965,0.256811522,0.797494634,gain,ns,0.0000417,0.0000164,2.541386149,0.011528353,pos,ns,-0.004012025,0.004803962,-0.835149127,0.404276919,neg,ns,0.393321053,0.000295717,0.000165208,1.789966544,0.074435162,pos,ns,0.786691161,Gm50297,Gm50297_Intergenic_downstream,18,81852895,81852944,81852943,81852944,50,-,GAGCTCTAATGTGGCTGGACATGTTTCAGTGGGGTCATTAATCAGACCCG,Distal Intergenic,18,82261062,82261262,201,2,Gm50297-201,408367,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,17,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17431,cg05954117,0.000000381,0.00000109,0.349461696,0.726979995,gain,ns,0.00000471,0.00000185,2.541233395,0.011533286,pos,ns,0.001022799,0.000543247,1.882750637,0.060670445,pos,ns,1.217022821,-0.0000438,0.0000187,-2.342168442,0.019804682,neg,ns,0.971599945,Crtc2,Crtc2_Exon,3,90261015,90261064,90261015,90261016,50,-,CGGGCCCAGCCGACGCCAGAAGGTCCCAACAGCAGCTGCCCAAACAGTTT,"Exon (Crtc2-201/Crtc2, exon 11 of 14)",3,90254163,90264125,9963,1,Crtc2-201,6852,Crtc2-201;Crtc2-203;Crtc2-206;Crtc2-202;Crtc2-205;Crtc2-208;Crtc2-204;Crtc2-207;Dennd4b-202,Crtc2;Crtc2;Crtc2;Crtc2;Crtc2;Crtc2;Crtc2;Crtc2;Dennd4b,0;0;0;6691;0;0;2964;2050;-4121,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,5,74343,ENSMUSG00000027936,conserved gene but different region,3,90260975,90261067,93,*,93,8,0.688172043,0.775,0.086021505,0.00000681,CpGisland,TRUE,U10,Tr-S
1107,cg05320089,-0.00000644,0.00000438,-1.469633485,0.142675168,loss,ns,-0.0000189,0.00000745,-2.540861969,0.011545289,neg,ns,-0.000976355,0.002181341,-0.447594015,0.654758829,neg,ns,0.183918637,-0.0000877,0.000075,-1.169301481,0.243180478,neg,ns,0.941597179,Ankrd10,Ankrd10_Exon,8,11623806,11623855,11623854,11623855,50,+,GCTCCCCCTTTCTAGGATTACTTGAAAAAATCAAGTCAATTCGAATTACG,"Exon (Ankrd10-206/Ankrd10, exon 4 of 7)",8,11611583,11635754,24172,2,Ankrd10-204,11899,Ankrd10-204;Ankrd10-202;Ankrd10-201;Ankrd10-206;Ankrd10-209;Ankrd10-208;Ankrd10-203;Ankrd10-207;Ankrd10-205,Ankrd10;Ankrd10;Ankrd10;Ankrd10;Ankrd10;Ankrd10;Ankrd10;Ankrd10;Ankrd10,0;0;0;0;0;0;0;11899;10095,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,102334,ENSMUSG00000031508,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22899,cg00843792,-0.000000928,0.00000189,-0.492131557,0.622974667,loss,ns,0.00000814,0.0000032,2.540837081,0.011546093,pos,ns,0.002786056,0.000938573,2.968394892,0.003226941,pos,ns,2.491208984,-0.0000597,0.0000323,-1.850559635,0.065184177,neg,ns,0.050476172,Lrrc41,Lrrc41_Exon,4,116075437,116075486,116075485,116075486,50,-,GGAGTTGCTGGTTCTGTGAGGTAGCGGCGGCAACGACCATGGAGGCCACG,Promoter (<=1kb),4,116075463,116083056,7594,1,Lrrc41-206,0,Lrrc41-201;Lrrc41-206;Lrrc41-202;Lrrc41-204;Lrrc41-205;Uqcrh-201;Uqcrh-204;Uqcrh-202;Uqcrh-203,Lrrc41;Lrrc41;Lrrc41;Lrrc41;Lrrc41;Uqcrh;Uqcrh;Uqcrh;Uqcrh,0;0;0;-1399;-3930;-406;-403;-366;-378,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,9,230654,ENSMUSG00000028703,conserved gene and region,4,116075337,116076722,1386,*,1386,139,0.714285714,0.81376508,0.1002886,3.09E-105,CpGisland,TRUE,U1,Pr-A
21854,cg07864976,-0.0000264,0.0000107,-2.452546755,0.014735756,loss,ns,0.0000464,0.0000183,2.540826696,0.011546429,pos,ns,0.004967299,0.00534805,0.928805657,0.35371245,pos,ns,0.451349654,-0.0000525,0.000183919,-0.285491639,0.775458167,neg,ns,0.834637286,Gm1943,Gm1943_Exon,8,109251630,109251679,109251678,109251679,50,+,AAGCCGAAGAATTACAGTTAACTTTTCCCACAGGGTACAGACGCCAGCCG,"Exon (D030068K23Rik-202/D030068K23Rik-202, exon 10 of 10)",8,109340691,109340864,174,2,Gm1943-201,89185,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,28,384864,NA,mapped to different genes,8,109251360,109251796,437,*,437,24,0.544622426,0.749571184,0.054919909,1.62E-12,CpGisland,TRUE,U15,NS
10511,cg11983139,-0.00000471,0.0000013,-3.635215532,0.000325072,loss,ns,0.00000559,0.0000022,2.540555578,0.011555198,pos,ns,0.001141902,0.000644827,1.770865015,0.077565763,pos,ns,1.11032993,0.00000378,0.0000222,0.170441446,0.864774164,pos,ns,0.962470887,Csnk1g3,Csnk1g3_Exon,18,53936893,53936942,53936941,53936942,50,+,ATCCCCACCATTTGAGAGCTCACCTTGCAGCAGACAGACATGGTGGCTCG,"Exon (Csnk1g3-203/Csnk1g3, exon 11 of 13)",18,53862122,53955548,93427,1,Csnk1g3-201,74771,Csnk1g3-201;Csnk1g3-203;Csnk1g3-202,Csnk1g3;Csnk1g3;Csnk1g3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,2,70425,ENSMUSG00000073563,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14668,cg03673311,-0.0000418,0.0000118,-3.538132686,0.000464631,loss,ns,0.000051,0.0000201,2.540520209,0.011556343,pos,ns,-0.0002409,0.005886406,-0.040924837,0.967382162,neg,ns,0.014401925,-0.0000242,0.000202433,-0.119702166,0.904796621,neg,ns,0.474759303,Usp25,Usp25_Exon,16,77237157,77237206,77237157,77237158,50,-,CGCTGCCCGAGCAGGCAGGCACCAGAAGAGCTAGCAGCCAATCCGGCCAT,"Exon (Mir99ahg-214/Mir99ahg-214, exon 2 of 4)",16,77083900,77108205,24306,1,Usp25-203,153306,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,5,30940,ENSMUSG00000022867,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18969,cg22565658,0.000114793,0.00000671,17.10208163,1.21E-46,gain,yes,-0.000029,0.0000114,-2.540468337,0.011558021,neg,ns,-0.005161752,0.003340752,-1.545086664,0.123345507,neg,ns,0.908876666,0.0000666,0.000114888,0.579846201,0.562439516,pos,ns,0.704605083,Nfia,Nfia_Exon,4,98081778,98081827,98081778,98081779,50,+,CGGGATCCAAGCTTTGTAAATATCCCTCAACAGACACAGGTGGGCCGCTC,"Exon (Nfia-202/Nfia, exon 10 of 11)",4,97777608,98118871,341264,1,Nfia-202,304170,Nfia-202;Nfia-203;Nfia-205;Nfia-201;Nfia-204,Nfia;Nfia;Nfia;Nfia;Nfia,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,44,18027,ENSMUSG00000028565,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14353,cg13233081,-0.0000164,0.00000808,-2.031592061,0.043047617,loss,ns,0.0000349,0.0000137,2.54009902,0.011569979,pos,ns,0.001870008,0.004021318,0.465023649,0.642240994,pos,ns,0.192301977,-0.00000402,0.000138293,-0.029042321,0.976849525,neg,ns,0.843702153,Gm18494,Gm18494_Intron,2,75314913,75314962,75314961,75314962,50,-,TTTCTTCTAGCTACTTAAAGGCATTACTGAATTATGGGCATCACAAAACG,"Intron (2600014E21Rik-201/2600014E21Rik-201, intron 5 of 5)",2,75302072,75303225,1154,2,Gm18494-201,-11737,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,6,100417269,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4904,cg20872072,0.0000249,0.00000482,5.1783974,0.000000404,gain,yes,-0.0000208,0.00000818,-2.539956893,0.011574583,neg,ns,-0.000165759,0.002396629,-0.069163463,0.944904097,neg,ns,0.024612268,0.00000562,0.0000824,0.068144571,0.945714482,pos,ns,0.738604935,Ppm1g,Ppm1g_Exon,5,31206066,31206115,31206114,31206115,50,+,TCATCTGACTCATCCTCACTGTCCTCAAAGAACTTGGACTTAGCAACTCG,"Exon (Ppm1g-205/Ppm1g, exon 5 of 10)",5,31202664,31220565,17902,2,Ppm1g-205,14450,Ppm1g-205;Ppm1g-201;Ppm1g-206;Ppm1g-203;Ppm1g-204;Zfp513-202;Zfp513-201;Zfp513-208;Zfp513-206,Ppm1g;Ppm1g;Ppm1g;Ppm1g;Ppm1g;Zfp513;Zfp513;Zfp513;Zfp513,0;0;-983;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,14208,ENSMUSG00000029147,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
149,cg16084679,-0.000016,0.00000768,-2.078995731,0.038439698,loss,ns,0.0000331,0.0000131,2.539515664,0.011588889,pos,ns,0.008613416,0.003823786,2.252588107,0.024984314,pos,ns,1.602332564,-0.000265853,0.0001315,-2.021700621,0.044066127,neg,ns,0.839536231,Kdm2a,Kdm2a_Exon,19,4356869,4356918,4356917,4356918,50,+,GTCATTTCAATGCCTTTCTGTGTGTTCACGTCCATGACATCCACCATGCG,"Exon (Kdm2a-201/Kdm2a, exon 6 of 21)",19,4314419,4398285,83867,2,Kdm2a-201,41367,Kdm2a-201;Kdm2a-202;Kdm2a-203;Kdm2a-205;Kdm2a-206;Kdm2a-204,Kdm2a;Kdm2a;Kdm2a;Kdm2a;Kdm2a;Kdm2a,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,21,30,225876,ENSMUSG00000054611,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22200,cg07699102,-0.00000227,0.00000158,-1.440154408,0.150832847,loss,ns,0.00000679,0.00000268,2.539156768,0.011600536,pos,ns,0.001487324,0.000783913,1.897306294,0.058716629,pos,ns,1.231238886,-0.0000431,0.000027,-1.598358701,0.110981892,neg,ns,0.955305438,Gm26897,Gm26897_Intron,5,111752587,111752636,111752635,111752636,50,-,CACTAATGTTTATCATTACCACACAGAAATATTACAATTCTTAAGGGGCG,"Intron (E130006D01Rik-203/E130006D01Rik-203, intron 1 of 4)",5,111733924,111734574,651,1,Gm26897-201,18712,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,23,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13751,cg26742119,-0.00000808,0.00000202,-3.998630724,0.0000797,loss,ns,0.00000872,0.00000343,2.538919747,0.011608234,pos,ns,0.000762863,0.001005695,0.758543571,0.448701954,pos,ns,0.348042039,0.0000415,0.0000346,1.200532734,0.230849072,pos,ns,0.958653214,Map3k20,Map3k20_Intron,2,72379008,72379057,72379056,72379057,50,-,AGAAGCCATTGCGTCCAAGGTAGGGGAACAGTTTAACTCCATCTCCTGCG,"Intron (Map3k20-201/Map3k20, intron 8 of 19)",2,72285637,72442610,156974,1,Map3k20-201,93371,Map3k20-201;Map3k20-204;Map3k20-202;Map3k20-206,Map3k20;Map3k20;Map3k20;Map3k20,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,14,18,65964,ENSMUSG00000004085,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4296,cg00672891,-0.00000053,0.00000246,-0.215810267,0.829277572,loss,ns,-0.0000106,0.00000417,-2.538841705,0.01161077,neg,ns,0.001886317,0.001222962,1.542416615,0.12399254,pos,ns,0.906604443,0.0000407,0.0000421,0.967643637,0.333976685,pos,ns,0.947545846,Zfp800,Zfp800_Exon,6,28244014,28244063,28244062,28244063,50,-,ATCCCTCCTTAGTCCTCTATGAACTTCATCAAAATGCCTCCTTACATTCG,"Exon (Zfp800-202/Zfp800, exon 5 of 6)",6,28239927,28261911,21985,2,Zfp800-202,17848,Zfp800-202;Zfp800-201;Zfp800-203;Zfp800-204;Zfp800-205,Zfp800;Zfp800;Zfp800;Zfp800;Zfp800,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,10,627049,ENSMUSG00000039841,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27113,cg06998890,-0.0000256,0.0000101,-2.52391565,0.012104906,loss,ns,0.0000437,0.0000172,2.538676882,0.011616127,pos,ns,0.013043403,0.005048009,2.583870625,0.010227228,pos,ns,1.990242061,-0.000558931,0.000173601,-3.219635251,0.001419631,neg,ns,0.753569528,Ralgapb,Ralgapb_Exon,2,158443256,158443305,158443304,158443305,50,-,TCAAGGTTTGCAGATAAATGATTATGTGTGCCATCCTGTCTTGGCCAGCG,"Exon (Ralgapb-203/Ralgapb, exon 11 of 30)",2,158409848,158499253,89406,1,Ralgapb-203,33408,Ralgapb-203;Ralgapb-201;Ralgapb-205;Ralgapb-209;Ralgapb-202;Ralgapb-204,Ralgapb;Ralgapb;Ralgapb;Ralgapb;Ralgapb;Ralgapb,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,6,228850,ENSMUSG00000027652,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8305,cg12942249,0.00000289,0.00000139,2.074191313,0.038886684,gain,ns,0.000006,0.00000237,2.538252607,0.011629926,pos,ns,0.001621873,0.000692988,2.340406542,0.019896694,pos,ns,1.701219072,-0.00000811,0.0000238,-0.340122196,0.733994853,neg,ns,0.96025856,Zeb2,Zeb2_Exon,2,44994499,44994548,44994499,44994500,50,-,CGCAGAAGGGAACTGCTTTTCTGGAATGTCTTGTCACATAAGTCACATGC,"Exon (Zeb2-212/Zeb2, exon 10 of 11)",2,44983632,45117395,133764,2,Zeb2-212,122847,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,21,158,24136,ENSMUSG00000026872,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19190,cg11857072,-0.00000088,0.0000111,-0.078917526,0.93714914,loss,ns,-0.0000481,0.0000189,-2.538189221,0.011631989,neg,ns,-0.005469788,0.005547453,-0.985999794,0.324902147,neg,ns,0.488247419,0.000073,0.000190776,0.38261398,0.702268199,pos,ns,0.798948201,Nr1d1,Nr1d1_threeUTR,11,98768164,98768213,98768212,98768213,50,-,AAGTGCAGAGTTCGATTCTGTACAAGGGGGCAGCGGCAGAAGGCCGGCCG,3' UTR,11,98767932,98775333,7402,2,Nr1d1-201,7120,Nr1d1-201;Nr1d1-202;Thra-201;Thra-202;Thra-203,Nr1d1;Nr1d1;Thra;Thra;Thra,0;2213;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,9,217166,ENSMUSG00000020889,mapped to different genes,11,98768145,98768493,349,*,349,27,0.633237822,0.781732205,0.077363897,8.51E-18,CpGisland,TRUE,U6,En-Sp
16682,cg15495108,-0.00000986,0.0000121,-0.815855836,0.415209021,loss,ns,0.0000521,0.0000205,2.538047486,0.011636603,pos,ns,0.000845808,0.00601353,0.140650873,0.888237104,pos,ns,0.051471089,0.000169877,0.000206805,0.821436114,0.412029178,pos,ns,0.805973483,Samt3,Samt3_Intergenic_downstream,X,86076098,86076147,86076146,86076147,50,+,TATGAGGGACACTGTGAACAAGTCATATTTTAACCTCCCATGAGCATACG,Distal Intergenic,20,86044199,86047313,3115,1,Samt3-201,31899,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,73495,ENSMUSG00000035454,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
621,cg13793234,0.0000268,0.00000469,5.726839659,2.42E-08,gain,yes,-0.0000202,0.00000796,-2.537996788,0.011638254,neg,ns,0.000965376,0.002332536,0.413873878,0.679252665,pos,ns,0.167968649,-0.0000846,0.0000802,-1.054802969,0.292336831,neg,ns,0.900237588,Mark2,Mark2_Exon,19,7290625,7290674,7290625,7290626,50,-,CGGGCCAACTTCACCTTGGCAAAATTACCCTTGCCAATGGTCTTGAGGAG,"Exon (Mark2-202/Mark2, exon 2 of 18)",19,7275396,7341819,66424,2,Mark2-202,51145,Mark2-202;Mark2-206;Mark2-201;Mark2-221;Mark2-209;Mark2-203;Mark2-207;Mark2-215;Mark2-214;Mark2-220;Mark2-216;Mark2-210;Mark2-213,Mark2;Mark2;Mark2;Mark2;Mark2;Mark2;Mark2;Mark2;Mark2;Mark2;Mark2;Mark2;Mark2,0;0;0;0;0;0;0;0;-3262;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,10,13728,ENSMUSG00000024969,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27966,cg09372556,-0.0000287,0.00000811,-3.537572129,0.00046558,loss,ns,-0.0000349,0.0000138,-2.537981307,0.011638758,neg,ns,-0.008594538,0.004034304,-2.130364398,0.033928588,neg,ns,1.469434215,0.00011744,0.000138739,0.846475688,0.397940385,pos,ns,0.834225892,Plxna2,Plxna2_Intron,1,194743134,194743183,194743134,194743135,50,+,CGGGCCGAATGCAATGCAGACAGTTGTTTTAATTTGCAGCCAGATGCAGA,"Intron (Plxna2-201/Plxna2, intron 4 of 31)",1,194619825,194816869,197045,1,Plxna2-201,123309,Plxna2-201,Plxna2,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,4,18845,ENSMUSG00000026640,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21200,cg27035680,-0.00000334,0.00000149,-2.245088452,0.025467161,loss,ns,0.00000642,0.00000253,2.537700818,0.011647895,pos,ns,0.002109887,0.000740971,2.847461351,0.004701185,pos,ns,2.327792616,-0.0000621,0.0000255,-2.438018098,0.015329552,neg,ns,0.964850002,Mpped2,Mpped2_Intron,2,106716196,106716245,106716244,106716245,50,+,AAAGATCAGTTCCTCGCGTCCATAAAAACAAGTGTAAATTATCTGGTGCG,"Intron (Mpped2-202/Mpped2, intron 2 of 6)",2,106693269,106868356,175088,1,Mpped2-202,22927,Mpped2-202;Mpped2-206;Mpped2-201;Mpped2-203;Mpped2-204,Mpped2;Mpped2;Mpped2;Mpped2;Mpped2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,33,77015,ENSMUSG00000016386,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4991,cg13627994,-0.00000631,0.00000553,-1.140783724,0.254840466,loss,ns,0.0000238,0.0000094,2.537693099,0.011648146,pos,ns,0.007743132,0.002752593,2.813032068,0.005220944,pos,ns,2.282250945,-0.000239515,0.0000947,-2.530226374,0.011893744,neg,ns,0.899342764,Ankrd28,Ankrd28_Exon,14,31706789,31706838,31706789,31706790,50,+,CGTTTGCAAGGCTGCGTTGGTTGCATTGATGAGGTTTCTATCTGTTATCT,"Exon (Ankrd28-207/Ankrd28, exon 26 of 28)",14,31698768,31780393,81626,2,Ankrd28-207,73555,Ankrd28-207;Ankrd28-201;Ankrd28-204;Ankrd28-206,Ankrd28;Ankrd28;Ankrd28;Ankrd28,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,5,105522,ENSMUSG00000014496,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26022,cg26227101,-0.00000223,0.00000144,-1.548766079,0.122458218,loss,ns,0.00000621,0.00000245,2.537665534,0.011649045,pos,ns,0.001539823,0.000716591,2.148815911,0.032423153,pos,ns,1.489144753,0.0000151,0.0000246,0.614600584,0.539269355,pos,ns,0.036274324,Prdm2,Prdm2_Exon,4,143162119,143162168,143162167,143162168,50,-,CTGCTATCTCAGGGTTGTCTTCCCCATTGTACCAGACCAGGAGCTCCTCG,"Exon (Prdm2-201/Prdm2, exon 6 of 10)",4,143107391,143212705,105315,2,Prdm2-201,50537,Gm13039-201;Prdm2-201;Prdm2-203;Prdm2-202,Gm13039;Prdm2;Prdm2;Prdm2,-4435;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,110593,ENSMUSG00000057637,conserved gene but different region,4,143161653,143162177,525,*,525,68,0.718095238,1.014492754,0.12952381,2.66E-60,CpGisland,TRUE,U1,Pr-A
25939,cg10053134,0.0000192,0.0000047,4.073876096,0.0000588,gain,ns,-0.0000203,0.00000799,-2.536984803,0.011671248,neg,ns,-0.002410543,0.00233964,-1.030305156,0.303669951,neg,ns,0.51759818,0.000116502,0.0000805,1.447948919,0.148641928,pos,ns,0.919074494,Spen,Spen_Exon,4,141516864,141516913,141516912,141516913,50,-,TGCTGCTGATTGAATCACTACTGGAGGATCTACTTCTAGAGCCGCTGCCG,Promoter (<=1kb),4,141495529,141516909,21381,2,Spen-203,0,Spen-201;Spen-202;Spen-203;Spen-205,Spen;Spen;Spen;Spen,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,17,19,56381,ENSMUSG00000040761,conserved gene and region,4,141516893,141517057,165,*,165,11,0.636363636,0.665810712,0.066666667,0.000000724,CpGisland,TRUE,U10,Tr-S
16886,cg06073898,0.0000119,0.0000122,0.980524028,0.32759211,gain,ns,0.0000525,0.0000207,2.536677905,0.011681271,pos,ns,0.013992107,0.00606438,2.307260818,0.021698924,pos,ns,1.663561807,0.0000132,0.000208554,0.063510047,0.949401291,pos,ns,0.482010575,Zdhhc22,Zdhhc22_Exon,12,86988307,86988356,86988355,86988356,50,+,GCATGTTCCTGCTGCCGATGCAGTTGCCGGTGAAGAAACAGTGATGGTCG,"Exon (Zdhhc22-202/Zdhhc22, exon 2 of 3)",12,86980763,86990430,9668,2,Zdhhc22-202,2074,Zdhhc22-202;Zdhhc22-203;Zdhhc22-201,Zdhhc22;Zdhhc22;Zdhhc22,0;-4472;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,238331,ENSMUSG00000048483,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
23232,cg01865273,0.000000595,0.0000051,0.116581774,0.90726697,gain,ns,-0.000022,0.00000867,-2.536127443,0.011699267,neg,ns,-0.009605691,0.00254016,-3.781529447,0.00018699,neg,ns,3.728181949,0.00017148,0.0000874,1.963000255,0.050540011,pos,ns,0.843062872,Eri3,Eri3_Intron,4,117576327,117576376,117576375,117576376,50,-,GTGTAAATCAGCAATTAAAACCCAAACAGCCAAATGCCAAAGATGACCCG,"Intron (Eri3-201/Eri3, intron 3 of 8)",4,117550365,117674297,123933,1,Eri3-201,25962,Eri3-201;Eri3-205;Eri3-206,Eri3;Eri3;Eri3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,82,97,140546,ENSMUSG00000033423,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10321,cg27321055,-0.00000327,0.00000593,-0.55088078,0.582112185,loss,ns,0.0000256,0.0000101,2.536018319,0.011702837,pos,ns,0.007883161,0.002953296,2.669275511,0.008001881,pos,ns,2.096807892,-0.0000126,0.000101564,-0.123947813,0.901436923,neg,ns,0.895783635,Akap6,Akap6_Intron,12,53020881,53020930,53020881,53020882,50,+,CGTTTAAGCAAAGTTTAAGTTGAAATGTTGAGTTAATGATGCTCACTTTA,"Intron (Akap6-201/Akap6, intron 8 of 13)",12,52699383,53155599,456217,1,Akap6-201,321498,Akap6-201;Akap6-202,Akap6;Akap6,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,13,238161,ENSMUSG00000061603,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27954,cg06549091,-0.000104708,0.0000293,-3.570322249,0.000413092,loss,ns,0.000126335,0.0000498,2.535677001,0.011714011,pos,ns,0.085184685,0.014596447,5.835987697,1.35E-08,pos,ns,7.870742619,-0.003400507,0.000501971,-6.774315366,6.29E-11,neg,yes,0.465121498,Gm38360,Gm38360_Intergenic_upstream,1,192833122,192833171,192833170,192833171,50,-,AATTGCCTTTAATTAGCTTTAATAAGACAGCCTTTTTGCTAATTAAAACG,Distal Intergenic,1,192820674,192821127,454,2,Gm38360-201,-12044,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7437,cg17476964,0.0000363,0.00000361,10.06487279,8.36E-21,gain,yes,-0.0000156,0.00000614,-2.535233583,0.011728542,neg,ns,-0.001348489,0.001797378,-0.750253416,0.453671135,neg,ns,0.343258852,0.0000839,0.0000618,1.356668934,0.175873548,pos,ns,0.088595834,Ostm1,Ostm1_Intron,10,42632646,42632695,42632646,42632647,50,-,CGCCAATAGTGGGGAAGTCAGAGCTAATCCTCAGAAGGAATCACGGGAAA,"Intron (Ostm1-202/Ostm1, intron 2 of 5)",10,42583835,42698323,114489,1,Ostm1-202,48811,Ostm1-202;Ostm1-203,Ostm1;Ostm1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,21,22,14628,ENSMUSG00000038280,conserved gene and region,10,42632523,42632647,125,*,125,9,0.528,1.057330827,0.072,0.00000584,CpGisland,TRUE,U3,Pr-B
22181,cg10088241,-0.0000164,0.0000117,-1.407451302,0.160295489,loss,ns,0.0000503,0.0000198,2.534991387,0.011736485,pos,ns,0.008866494,0.005808151,1.526560557,0.127889925,pos,ns,0.893163668,-0.000296619,0.000199742,-1.485013245,0.138556459,neg,ns,0.610654993,Slitrk5,Slitrk5_Exon,14,111679068,111679117,111679068,111679069,50,+,CGATTATTATGGGGAAATCTGTGACAATGCATGTCCTTGTGAGGAAAAGG,"Exon (Slitrk5-201/Slitrk5, exon 2 of 2)",14,111675097,111683141,8045,1,Slitrk5-201,3971,Slitrk5-201;Slitrk5-202,Slitrk5;Slitrk5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,10,75409,ENSMUSG00000033214,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
7239,cg03738429,-0.000045,0.0000157,-2.85886941,0.004539637,loss,ns,0.0000678,0.0000267,2.534681553,0.011746654,pos,ns,0.007991612,0.007831061,1.020501857,0.308286243,pos,ns,0.511045855,-0.000378077,0.00026931,-1.403874351,0.161357249,neg,ns,0.813748476,Lsamp,Lsamp_Intron,16,41721406,41721455,41721454,41721455,50,-,ACCTTCTTTTGCTAATCGCTGATAAAAAGCTTAATTCTATTAACAACTCG,"Intron (Lsamp-206/Lsamp, intron 3 of 8)",16,39984371,42176295,2191925,1,Lsamp-206,1737035,Lsamp-206;Lsamp-201;Lsamp-202,Lsamp;Lsamp;Lsamp,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,23,268890,ENSMUSG00000061080,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27292,cg22520779,0.0000565,0.00000501,11.26538459,6.63E-25,gain,yes,-0.0000216,0.00000851,-2.533295999,0.011792224,neg,ns,0.003629843,0.002494578,1.455092569,0.146655478,pos,ns,0.83370171,-0.0000755,0.0000858,-0.880449242,0.379298044,neg,ns,0.033200986,Prrx1,Prrx1_Exon,1,163312535,163312584,163312583,163312584,50,+,AAGTTCTTTTTCGCCTGCAGGGTGTCGAGGTTGCCCGGGCTGTCCAAGCG,"Exon (Prrx1-202/Prrx1, exon 1 of 5)",1,163245119,163313672,68554,2,Prrx1-202,1088,Prrx1-202;Prrx1-201;Prrx1-204;Prrx1-203,Prrx1;Prrx1;Prrx1;Prrx1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,11,18933,ENSMUSG00000026586,conserved gene and region,1,163312287,163312621,335,*,335,30,0.689552239,0.785893025,0.089552239,1.24E-21,CpGisland,TRUE,U3,Pr-B
14708,cg07182005,-0.00000928,0.00000743,-1.249133403,0.212558666,loss,ns,-0.000032,0.0000126,-2.533217349,0.011794816,neg,ns,-0.007013257,0.003698059,-1.896469528,0.058827509,neg,ns,1.230419544,0.000147333,0.000127176,1.158496134,0.247553308,pos,ns,0.893431694,2210408I21Rik,2210408I21Rik_Intron,13,77397370,77397419,77397418,77397419,50,-,ACTATTCATTAAATGACACTTATTTTCTCCCACTTTACAAGAATACAGCG,"Intron (2210408I21Rik-201/2210408I21Rik, intron 19 of 19)",13,77135540,77613784,478245,1,2210408I21Rik-201,261830,2210408I21Rik-201,2210408I21Rik,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,19,20,72371,ENSMUSG00000071252,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18068,cg21416158,-0.00000147,0.00000186,-0.790247924,0.429987081,loss,ns,-0.00000801,0.00000316,-2.532392552,0.011822023,neg,ns,-0.00028436,0.000926417,-0.306946242,0.759090371,neg,ns,0.119706517,0.0000148,0.0000319,0.465746727,0.641723852,pos,ns,0.971642388,Lta4h,Lta4h_Exon,10,93482277,93482326,93482325,93482326,50,-,CGAATGCAAGAGGTGTACAACTTCAATGCCATTAACAATTCTGAAATACG,"Exon (Lta4h-201/Lta4h, exon 17 of 19)",10,93453411,93484874,31464,1,Lta4h-201,28866,Lta4h-201;Lta4h-202;Lta4h-207;Lta4h-208,Lta4h;Lta4h;Lta4h;Lta4h,0;0;0;-145,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,16993,ENSMUSG00000015889,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6193,cg21139873,0.00000378,0.00000173,2.179108396,0.030076276,gain,ns,-0.00000746,0.00000295,-2.532033904,0.011833871,neg,ns,0.000843395,0.000862933,0.977359195,0.329153435,pos,ns,0.482601608,-0.0000485,0.0000297,-1.633052057,0.103473275,neg,ns,0.049217044,Pura,Pura_Exon,18,36287809,36287858,36287857,36287858,50,+,GCTGCCCGAGGGCACCTCCTTGACTGTGGACAACAAGCGCTTCTTCTTCG,"Exon (Pura-201/Pura, exon 2 of 2)",18,36281097,36292535,11439,1,Pura-201,6712,Pura-201,Pura,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,13,19,19290,ENSMUSG00000043991,conserved gene and region,18,36286687,36288029,1343,*,1343,129,0.68652271,0.823041768,0.096053611,4.14E-95,CpGisland,TRUE,U4,Pr-F
24907,cg14878651,0.0000443,0.00000768,5.76917075,1.93E-08,gain,yes,0.000033,0.000013,2.531935189,0.011837134,pos,ns,0.009496001,0.003821245,2.485054401,0.013480369,pos,ns,1.870298227,-0.0000422,0.000131412,-0.321503552,0.748045485,neg,ns,0.19697665,Fam229a,Fam229a_threeUTR,4,129491881,129491930,129491881,129491882,50,-,CGAGACAATGATGCACATTTTAAAATAAAAGAATGATGCACATTTTAATA,Promoter (<=1kb),4,129491190,129491956,767,1,Fam229a-201,691,Bsdc1-201;Fam229a-201;Fam229a-202;Tssk3-201,Bsdc1;Fam229a;Fam229a;Tssk3,30300;0;0;0,TRUE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,68233,ENSMUSG00000078554,conserved gene and region,4,129491074,129491882,809,*,809,67,0.694684796,0.694367226,0.082818294,3.15E-45,CpGisland,TRUE,U3,Pr-B
5604,cg03909039,-0.0000027,0.00000346,-0.7798425,0.43607857,loss,ns,0.0000149,0.00000588,2.531916995,0.011837735,pos,ns,0.003670335,0.001723286,2.129847544,0.033971608,pos,ns,1.468883898,-0.000110187,0.0000593,-1.859261319,0.06393743,neg,ns,0.932057238,Gm6100,Gm6100_Intergenic_downstream,8,34303914,34303963,34303962,34303963,50,-,AGCTTTTCAAAATGAACATACTGAACAGCAAATTATCATCCCATTAAGCG,Distal Intergenic,8,34307285,34307687,403,2,Gm6100-201,3773,Gm6100-201,Gm6100,3724,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,619780,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8241,cg15928699,-0.00000692,0.0000106,-0.655320451,0.512747452,loss,ns,0.0000454,0.0000179,2.531489957,0.011851861,pos,ns,0.01084825,0.005253238,2.065059583,0.039748506,pos,ns,1.40067919,-0.000161826,0.000180658,-0.895754651,0.371078833,neg,ns,0.529236303,Slf2,Slf2_Intergenic_upstream,19,44896616,44896665,44896616,44896617,50,+,CGGGGTCAGCAGAGGGTGCCAGATTCCTGCTCACTAGAAACTGTGTCCAC,Distal Intergenic,19,44931151,44983188,52038,1,Slf2-201,-34486,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,15,17,226151,ENSMUSG00000036097,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11569,cg22072727,0.000011,0.00000527,2.080144466,0.038333476,gain,ns,-0.0000226,0.00000895,-2.531355356,0.011856316,neg,ns,0.002876787,0.002620956,1.097610103,0.273226601,pos,ns,0.563477021,0.0000132,0.0000901,0.146079954,0.883953215,pos,ns,0.883895958,Pkp4,Pkp4_Exon,2,59214917,59214966,59214917,59214918,50,-,CGTTTTCTAATTATAAGGTGTTTACATCCCTGAGTACATTGGGATGACTG,"Exon (Pkp4-204/Pkp4, exon 3 of 3)",2,59160850,59355204,194355,1,Pkp4-210,54067,Pkp4-210;Pkp4-202;Pkp4-211;Pkp4-205;Pkp4-201;Pkp4-212;Pkp4-213;Pkp4-204;Pkp4-214;Pkp4-208,Pkp4;Pkp4;Pkp4;Pkp4;Pkp4;Pkp4;Pkp4;Pkp4;Pkp4;Pkp4,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,7,227937,ENSMUSG00000026991,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8938,cg23871202,-0.00000984,0.00000867,-1.134586022,0.257425353,loss,ns,-0.0000373,0.0000147,-2.531190994,0.011861758,neg,ns,-0.01116946,0.004314818,-2.588628566,0.010090016,neg,ns,1.996108158,0.0000449,0.000148386,0.3028648,0.762196028,pos,ns,0.828503229,Myod1,Myod1_Intergenic_upstream,7,46341623,46341672,46341623,46341624,50,+,CGGCCGCCAGCCCAGCAGCTGTTGCCTCAGATCAGTGTGGACCATCTAAT,Distal Intergenic,7,46376474,46379099,2626,1,Myod1-201,-34802,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,3,17927,ENSMUSG00000009471,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16149,cg11545683,-0.0000171,0.000007,-2.449320196,0.014865839,loss,ns,0.0000301,0.0000119,2.531027567,0.011867172,pos,ns,0.000694436,0.003483509,0.199349636,0.842119946,pos,ns,0.074626046,0.000130219,0.000119798,1.086989838,0.277885745,pos,ns,0.872467164,Lhx1,Lhx1_Promoter,11,84531721,84531770,84531769,84531770,50,+,GGCAAAGCTTTATTTTCGCCAAGAGACAGATATTTTATTTCTCTCTTACG,Promoter (6-7kb),11,84518284,84525535,7252,2,Lhx1-201,-6186,NA,NA,NA,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,1,23,16869,ENSMUSG00000018698,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
14980,cg16114085,-0.00000714,0.00000269,-2.654560478,0.008351122,loss,ns,0.0000116,0.00000457,2.53062903,0.011880383,pos,ns,0.001485521,0.00133848,1.109857093,0.26792079,pos,ns,0.571993585,-0.000082,0.000046,-1.781454466,0.075817176,neg,ns,0.942470838,Ntrk3,Ntrk3_threeUTR,7,78302661,78302710,78302709,78302710,50,+,CATTGACATCCTCAACATAGATGCCATGGTTAAGAGGCTTGGAATGTCCG,3' UTR,7,78175959,78578408,402450,2,Ntrk3-201,275698,Ntrk3-201;Ntrk3-206;Ntrk3-205;Ntrk3-202;Ntrk3-203;Ntrk3-216,Ntrk3;Ntrk3;Ntrk3;Ntrk3;Ntrk3;Ntrk3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,15,18213,ENSMUSG00000059146,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1660,cg09990069,0.00000499,0.0000127,0.394259607,0.693660461,gain,ns,0.0000544,0.0000215,2.530342325,0.011889896,pos,ns,0.007959766,0.006302882,1.262877266,0.207582365,pos,ns,0.682809544,-0.000112055,0.000216756,-0.516962579,0.605550908,neg,ns,0.298019342,Gm26993,Gm26993_Intergenic_upstream,19,14096540,14096589,14096588,14096589,50,+,ATTTGCAAAGCTCAATGGCCCTAGTTACAGCAATTATCAGTTACTAAACG,Distal Intergenic,19,14017583,14018371,789,2,Gm26993-201,-78169,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,8,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11342,cg20558754,0.000096,0.00000962,9.983195761,1.56E-20,gain,yes,-0.0000414,0.0000163,-2.530256697,0.011892738,neg,ns,0.005681569,0.004787783,1.18668066,0.236262223,pos,ns,0.626605714,0.0000782,0.000164651,0.474964512,0.635146714,pos,ns,0.126369396,Pcdh7,Pcdh7_fiveUTR,5,57718840,57718889,57718840,57718841,50,+,CGAGCGGGCGATTAGCACCCATTGCATGAATTATGAAACAATAACTTTCG,Promoter (<=1kb),5,57717967,58133230,415264,1,Pcdh7-203,873,Pcdh7-203;Pcdh7-201;Pcdh7-202;Pcdh7-205;Pcdh7-206;Pcdh7-207;Pcdh7-204,Pcdh7;Pcdh7;Pcdh7;Pcdh7;Pcdh7;Pcdh7;Pcdh7,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,13,54216,ENSMUSG00000029108,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
5908,cg16822914,0.000137696,0.0000126,10.96763473,7.20E-24,gain,yes,-0.000054,0.0000213,-2.530099449,0.011897959,neg,ns,0.001849474,0.006248627,0.295980808,0.76744291,pos,ns,0.114953922,0.00000906,0.00021489,0.042151504,0.966405058,pos,ns,0.385276905,Ctnna1,Ctnna1_fiveUTR,18,35214580,35214629,35214628,35214629,50,+,TGCACAGACTTACCCATTCTTCTGAGCACATTGGAGGCTGCATTCAGTCG,5' UTR,18,35118859,35254779,135921,1,Ctnna1-201,95721,Ctnna1-201;Ctnna1-204;Ctnna1-210;Ctnna1-203;Ctnna1-202;Lrrtm2-201;Lrrtm2-202;Lrrtm2-203,Ctnna1;Ctnna1;Ctnna1;Ctnna1;Ctnna1;Lrrtm2;Lrrtm2;Lrrtm2,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,6,13,12385,ENSMUSG00000037815,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2303,cg20701299,-0.00000162,0.000000858,-1.893190687,0.059263672,loss,ns,0.00000369,0.00000146,2.529089924,0.011931527,pos,ns,0.000865295,0.000427081,2.026067006,0.043614032,pos,ns,1.360373758,-0.0000222,0.0000147,-1.51056321,0.131918391,neg,ns,0.975830639,Meis1,Meis1_Intron,11,18990547,18990596,18990595,18990596,50,-,ATTTTCCTTGCTGGAAATTCTGATTCCGCTATGATCTGTGAGGCATTCCG,"Intron (Meis1-206/Meis1, intron 6 of 9)",11,18879817,19018985,139169,2,Meis1-206,28389,Meis1-206;Meis1-202;Meis1-209;Meis1-201;Meis1-203;Meis1-208;Meis1-207;Meis1-204,Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,88,17268,ENSMUSG00000020160,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9830,cg02580016,0.0000634,0.0000207,3.063525177,0.002379439,gain,ns,0.0000888,0.0000351,2.528599571,0.011947862,pos,ns,0.027379645,0.01029411,2.659739024,0.008226684,pos,ns,2.084775194,-0.000685096,0.000354014,-1.935224082,0.05387212,neg,ns,0.497524198,Rap2c,Rap2c_Exon,X,51017724,51017773,51017724,51017725,50,-,CGGTGTCCAGAATTTCCAGCACGGAGGGGGAAGAGTCCACTTCGATCTCT,Promoter (<=1kb),20,51003912,51018018,14107,2,Rap2c-201,245,Rap2c-201,Rap2c,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,6,72065,ENSMUSG00000050029,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
2010,cg27501104,0.0000213,0.0000124,1.709578115,0.088344608,gain,ns,0.0000534,0.0000211,2.528537148,0.011949943,pos,ns,0.011598988,0.006191948,1.873237205,0.061976466,pos,ns,1.207773192,-0.000222506,0.000212941,-1.044921033,0.296873572,neg,ns,0.49091086,Prune2,Prune2_Intron,19,17093985,17094034,17094033,17094034,50,-,CCAACTTTATCCATACTCCAAACAAATTATCTCTTATAATTACCAGCCCG,"Intron (Prune2-201/Prune2, intron 6 of 19)",19,16956118,17223932,267815,1,Prune2-201,137867,Prune2-201,Prune2,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,8,353211,ENSMUSG00000039126,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5695,cg21924105,-0.000000958,0.00000121,-0.792851034,0.428470982,loss,ns,0.00000519,0.00000205,2.528357138,0.011955946,pos,ns,0.001106556,0.000601378,1.840035423,0.066718902,pos,ns,1.175751112,-0.0000342,0.0000207,-1.65442914,0.099052449,neg,ns,0.968585625,Mapkap1,Mapkap1_Exon,2,34581260,34581309,34581308,34581309,50,-,AGCAGCCACCATTACAAGTCATTCAAAGTCAGCATGATCCACAGACTGCG,"Exon (Mapkap1-204/Mapkap1, exon 8 of 11)",2,34406862,34623475,216614,1,Mapkap1-204,174398,Mapkap1-204;Mapkap1-202;Mapkap1-201;Mapkap1-209;Mapkap1-203,Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,59,227743,ENSMUSG00000038696,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3778,cg13699837,0.0000513,0.0000051,10.05170876,9.25E-21,gain,yes,-0.0000219,0.00000866,-2.527992091,0.011968127,neg,ns,0.000180501,0.002537759,0.071126114,0.943343248,pos,ns,0.025330255,-0.000105995,0.0000873,-1.214513944,0.225475854,neg,ns,0.741542179,Megf8,Megf8_Exon,7,25364039,25364088,25364087,25364088,50,-,CTCTCACTCTGTGTGCTCCTCTGGAAGGCCAAGCAGGCTCTGGACCAGCG,"Exon (Megf8-201/Megf8, exon 41 of 41)",7,25317164,25365917,48754,1,Megf8-201,46875,Cnfn-202;Cnfn-201;Megf8-201;Megf8-202,Cnfn;Cnfn;Megf8;Megf8,5615;5636;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,269878,ENSMUSG00000045039,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23340,cg12564910,0.00000148,0.0000153,0.096795131,0.922951638,gain,ns,-0.0000658,0.000026,-2.527120066,0.01199727,neg,ns,0.015237114,0.007629209,1.997207568,0.046676463,pos,ns,1.330902061,-0.000430435,0.000262368,-1.640579626,0.101898917,neg,ns,0.364359145,Socs3,Socs3_Exon,11,117968122,117968171,117968122,117968123,50,+,CGTTCACCACCAGCTGGTACTCGCTCTTGGAGCTGAAGGTCTTGAGGCGC,"Exon (Socs3-201/Socs3, exon 2 of 2)",11,117966079,117969186,3108,2,Socs3-201,1015,Socs3-201;Socs3-202;Socs3-203,Socs3;Socs3;Socs3,0;1876;1280,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,9,12702,ENSMUSG00000053113,conserved gene and region,11,117967759,117969258,1500,*,1500,136,0.671333333,0.805559943,0.090666667,1.37E-96,CpGisland,TRUE,U3,Pr-B
5579,cg02167097,0.00000288,0.00000328,0.878715142,0.380236325,gain,ns,-0.0000141,0.00000557,-2.526908368,0.012004354,neg,ns,-0.004289791,0.001632458,-2.62781131,0.009021231,neg,ns,2.044734217,0.0000111,0.0000561,0.197278686,0.843738742,pos,ns,0.892673865,4931406P16Rik,4931406P16Rik_Exon,7,34285102,34285151,34285150,34285151,50,+,TATTGCTGGTGCTGCTGCACCTTCTGCTTGGACCCGCCAAGCAGGAAGCG,"Exon (4931406P16Rik-202/4931406P16Rik, exon 2 of 14)",7,34236707,34313551,76845,2,4931406P16Rik-202,28400,4931406P16Rik-202;4931406P16Rik-201;4931406P16Rik-210;4931406P16Rik-208;4931406P16Rik-203;4931406P16Rik-204,4931406P16Rik;4931406P16Rik;4931406P16Rik;4931406P16Rik;4931406P16Rik;4931406P16Rik,0;0;0;0;28394;20361,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,8,233103,ENSMUSG00000066571,conserved gene and region,7,34285022,34285154,133,*,133,9,0.69924812,0.561444653,0.067669173,0.00000959,CpGisland,TRUE,U10,Tr-S
6969,cg12382554,-0.0000156,0.00000319,-4.881398471,0.00000169,loss,yes,0.0000137,0.00000542,2.526702763,0.012011239,pos,ns,-0.002330703,0.001587599,-1.468067871,0.143099681,neg,ns,0.844361334,0.00000599,0.0000546,0.109638194,0.912767257,pos,ns,0.916022933,9330182O14Rik,9330182O14Rik_Intergenic_downstream,15,40256353,40256402,40256401,40256402,50,+,ACAAAATCAAAATATTCATGAAACACAATGATATCTCCCCAAAGCAGCCG,Distal Intergenic,15,40142188,40148689,6502,1,9330182O14Rik-201,114165,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,6,328531,ENSMUSG00000094112,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2559,cg09922578,-0.00000574,0.00000687,-0.836063607,0.403763082,loss,ns,0.0000295,0.0000117,2.526274542,0.012025588,pos,ns,0.010776983,0.003418311,3.152721924,0.001775846,pos,ns,2.750594812,-0.000366611,0.000117555,-3.118622858,0.001987585,neg,ns,0.874935453,Ppp3cb,Ppp3cb_Exon,14,20523654,20523703,20523702,20523703,50,-,CTTTTTCTGTACATTCTATAGCTGCAAAACAAATAGCTTAATATGCATCG,"Exon (Ppp3cb-202/Ppp3cb, exon 8 of 14)",14,20499364,20546573,47210,2,Ppp3cb-202,22870,Ppp3cb-202;Ppp3cb-205;Ppp3cb-201;Ppp3cb-206;Ppp3cb-209;Ppp3cb-203;Ppp3cb-204,Ppp3cb;Ppp3cb;Ppp3cb;Ppp3cb;Ppp3cb;Ppp3cb;Ppp3cb,0;0;0;0;-4847;-2933;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,10,19056,ENSMUSG00000021816,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18747,cg08657007,-0.00000453,0.00000182,-2.493810205,0.013158893,loss,ns,-0.00000779,0.00000308,-2.526171476,0.012029044,neg,ns,-0.002389123,0.000903466,-2.644395807,0.008600305,neg,ns,2.065486166,0.0000235,0.0000311,0.756045631,0.450195961,pos,ns,0.939030569,Tbkbp1,Tbkbp1_threeUTR,11,97137441,97137490,97137441,97137442,50,-,CGCAAGGGCAGGGACCCCCCACGAGATTCATGCAGCATTCAAAGTGAGTG,3' UTR,11,97136171,97149712,13542,2,Tbkbp1-201,12222,Tbkbp1-201;Tbkbp1-204;Tbkbp1-205;Tbkbp1-203;Tbkbp1-202,Tbkbp1;Tbkbp1;Tbkbp1;Tbkbp1;Tbkbp1,0;0;0;0;12558,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,73174,ENSMUSG00000038517,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25564,cg09161688,0.0000188,0.00000866,2.173824346,0.030474767,gain,ns,0.0000372,0.0000147,2.525997876,0.012034867,pos,ns,0.007521001,0.004310351,1.744869704,0.081998505,pos,ns,1.086194064,-0.0000764,0.000148233,-0.515299562,0.606710963,neg,ns,0.656983345,Ebf3,Ebf3_Exon,7,137231224,137231273,137231272,137231273,50,-,CGTGTTTGGAATTGTTGTGCACAAACATGTTGTCTGACACGGCCAGCACG,"Exon (Ebf3-204/Ebf3, exon 8 of 16)",7,137193673,137314445,120773,2,Ebf3-204,83172,Ebf3-204;Ebf3-201;Ebf3-202;Ebf3-203;Ebf3-208;Ebf3-205;Ebf3-207,Ebf3;Ebf3;Ebf3;Ebf3;Ebf3;Ebf3;Ebf3,0;0;0;0;0;0;-4422,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,84,13593,ENSMUSG00000010476,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15385,cg06679868,-0.00000659,0.0000021,-3.13040367,0.001911931,loss,ns,0.00000903,0.00000358,2.525861736,0.012039435,pos,ns,0.002111096,0.001047447,2.015468208,0.044718312,pos,ns,1.349514595,-0.0000964,0.000036,-2.67755358,0.007811241,neg,ns,0.952481939,Gria2,Gria2_threeUTR,3,80689123,80689172,80689123,80689124,50,-,CGATGCCATATACGTTGTAACCTTCCTTATAAGTTGCAAAATTCTGTGAA,3' UTR,3,80681450,80802835,121386,2,Gria2-201,113663,Gria2-201;Gria2-202;Gria2-203;Gria2-206,Gria2;Gria2;Gria2;Gria2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,12,19,14800,ENSMUSG00000033981,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15852,cg24831051,0.0000118,0.0000107,1.098093778,0.273015696,gain,ns,0.0000461,0.0000183,2.525758464,0.012042901,pos,ns,0.006835569,0.005349562,1.277781059,0.202282654,pos,ns,0.694041358,-0.000134629,0.000183971,-0.731793324,0.464847566,neg,ns,0.912631254,Mef2c,Mef2c_threeUTR,13,83662570,83662619,83662570,83662571,50,+,CGGACGAAAGGGAAAGTCCCTCAGTCAAGCGCATGCGACTTTCTGAAGGA,3' UTR,13,83504034,83663343,159310,1,Mef2c-218,158536,Mef2c-218;Mef2c-228;Mef2c-201;Mef2c-202;Mef2c-222;Mef2c-223;Mef2c-227;Mef2c-213;Mef2c-214;Mef2c-212;Mef2c-203;Mef2c-219;Mef2c-225;Mef2c-230;Mef2c-211,Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,10,41,17260,ENSMUSG00000005583,mapped to different genes,13,83662502,83662606,105,*,105,10,0.590476191,1.097178683,0.095238095,0.000000101,CpGisland,TRUE,NA,NRS
20066,cg10784922,-0.00000101,0.00000168,-0.600619887,0.548532043,loss,ns,0.00000723,0.00000286,2.525174655,0.012062514,pos,ns,0.002300061,0.000838328,2.743628561,0.006430252,pos,ns,2.191771994,-0.0000553,0.0000288,-1.917227706,0.056127912,neg,ns,0.962359674,Hdac8,Hdac8_Exon,X,102402584,102402633,102402632,102402633,50,+,CCTCATGATCTGGGATCTCAGAGGATAGTGTTTTCCCTAGGATGACCCCG,"Exon (Hdac8-201/Hdac8, exon 9 of 11)",20,102284639,102505359,220721,2,Hdac8-201,102726,Hdac8-201;Hdac8-205;Hdac8-203,Hdac8;Hdac8;Hdac8,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,7,70315,ENSMUSG00000067567,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16627,cg10664079,0.00011946,0.0000099,12.0613352,1.00E-27,gain,yes,-0.0000425,0.0000168,-2.525052187,0.012066632,neg,ns,-0.007409739,0.004929502,-1.503141531,0.133820564,neg,ns,0.873477144,0.000319758,0.000169525,1.886197266,0.060202976,pos,ns,0.724299806,Bcas3,Bcas3_Intron,11,85667829,85667878,85667829,85667830,50,+,CGCGTAAAGCTGTTTGCATAGCGTGCTAACTCTATCAGGGTCATTTCCAG,"Intron (Bcas3-205/Bcas3, intron 24 of 27)",11,85353167,85826058,472892,1,Bcas3-205,314662,Bcas3-205;Bcas3-206;Bcas3-201;Bcas3-202;Bcas3-216;Bcas3-212;Bcas3-203;Bcas3-207,Bcas3;Bcas3;Bcas3;Bcas3;Bcas3;Bcas3;Bcas3;Bcas3,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,24,192197,ENSMUSG00000059439,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6268,cg02128244,0.0000331,0.00000642,5.150088845,0.000000464,gain,yes,0.0000275,0.0000109,2.525050383,0.012066692,pos,ns,0.009400201,0.003195494,2.941704733,0.003510094,pos,ns,2.454681304,-0.000110689,0.000109893,-1.007246903,0.314601688,neg,ns,0.129451894,Tshz3,Tshz3_Promoter,7,36690731,36690780,36690779,36690780,50,+,TGGCTGCCGCCAGTCTGGTCAATTTATCATGCAAATGTGGGTGCCCTCCG,Promoter (7-8kb),7,36698118,36773553,75436,1,Tshz3-201,-7338,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,58,243931,ENSMUSG00000021217,conserved gene and region,7,36690706,36690841,136,*,136,14,0.617647059,1.079977311,0.102941177,3.56E-11,CpGisland,TRUE,U13,Hc-P
19936,cg01941781,-0.00000687,0.00000648,-1.060948334,0.289539248,loss,ns,-0.0000278,0.000011,-2.524583769,0.012082393,neg,ns,-0.006960481,0.003224706,-2.158485339,0.031657455,neg,ns,1.499523997,0.0000997,0.000110897,0.899098245,0.369298169,pos,ns,0.849314465,Ogt,Ogt_Exon,X,101682193,101682242,101682241,101682242,50,+,ATATCTAGCCCTCTGTTCAACACCAAACAATACACAATGGAACTAGAGCG,"Exon (Ogt-202/Ogt, exon 23 of 23)",20,101640060,101682940,42881,1,Ogt-202,42133,Ogt-202;Ogt-201;Ogt-203,Ogt;Ogt;Ogt,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,32,33,108155,ENSMUSG00000034160,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5769,cg13759353,-0.0000207,0.0000158,-1.305493567,0.192692882,loss,ns,0.0000679,0.0000269,2.524318469,0.012091328,pos,ns,0.00348258,0.007881741,0.441854086,0.658902867,pos,ns,0.181178603,-0.000131758,0.000271052,-0.486097387,0.627241549,neg,ns,0.229322965,Sox2,Sox2_Intron,3,34667953,34668002,34668001,34668002,50,+,AACTCTAACAGTACTTTCTATTCTCCCAGCTGCTCACGTATTCCTTAACG,"Intron (Sox2ot-203/Sox2ot-203, intron 3 of 3)",3,34650405,34652461,2057,1,Sox2-201,17548,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,34,62,20674,ENSMUSG00000074637,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
16347,cg17630503,-0.00000296,0.00000452,-0.65528209,0.512772113,loss,ns,0.0000194,0.00000768,2.524247237,0.012093728,pos,ns,0.006280788,0.002250845,2.790413597,0.005590242,pos,ns,2.252569366,-0.000186568,0.0000774,-2.410236606,0.016524186,neg,ns,0.929476923,Trip12,Trip12_Exon,1,84763867,84763916,84763867,84763868,50,-,CGTGACAACATCTCCAAGGCAGTCAAGGCCTGCTCTGCCACATCAATACA,"Exon (Trip12-201/Trip12, exon 11 of 41)",1,84721189,84839304,118116,2,Trip12-201,75388,Trip12-201;Trip12-206;Trip12-207;Trip12-205;Trip12-208;Trip12-202;Trip12-203;Trip12-216,Trip12;Trip12;Trip12;Trip12;Trip12;Trip12;Trip12;Trip12,0;0;0;0;0;0;2799;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,11,14897,ENSMUSG00000026219,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25431,cg24405879,-0.00000407,0.00000507,-0.803045109,0.422563928,loss,ns,0.0000218,0.00000862,2.523784468,0.01210933,pos,ns,-0.00101112,0.002524928,-0.400455006,0.689097248,neg,ns,0.161719484,0.000153934,0.0000868,1.772779417,0.077247225,pos,ns,0.915606721,Gm5904,Gm5904_Intergenic_upstream,7,136490925,136490974,136490925,136490926,50,+,CGCTTCTGTCCTAGTAAATGTAGTGGAGTATGAAAAAGGCAATTACATCT,Distal Intergenic,7,136657209,136658073,865,1,Gm5904-201,-166235,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,14,17,546009,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19447,cg27311171,-0.000017,0.00000858,-1.981244129,0.048447214,loss,ns,0.0000368,0.0000146,2.523527369,0.012118006,pos,ns,0.008551681,0.004271289,2.002131224,0.046141472,pos,ns,1.335908554,-0.000299075,0.000146889,-2.03605774,0.042594382,neg,ns,0.868638474,Tbx15,Tbx15_Exon,3,99326405,99326454,99326405,99326406,50,+,CGAAACCCTTTTGCTAAAGGATTCAGAGATTCTGGGAGAAACAGGTAAGA,"Exon (Tbx15-201/Tbx15, exon 6 of 8)",3,99253760,99354259,100500,1,Tbx15-201,72645,Tbx15-201,Tbx15,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,4,21384,ENSMUSG00000027868,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11674,cg24183230,-0.00000303,0.0000019,-1.598096366,0.111040273,loss,ns,0.00000812,0.00000322,2.523441917,0.012120891,pos,ns,0.002688564,0.000943253,2.850309565,0.00466037,pos,ns,2.331579632,-0.0000823,0.0000324,-2.53656314,0.011685021,neg,ns,0.958603113,Myo9a,Myo9a_Exon,9,59875164,59875213,59875212,59875213,50,-,CATTGTTGTGTTATTTGTTTTATCATTTGGTCAAGCAGGTTGCCAGACCG,"Exon (Myo9a-205/Myo9a, exon 27 of 43)",9,59750896,59928866,177971,1,Myo9a-203,124268,Myo9a-203;Myo9a-205;Myo9a-206;Myo9a-207,Myo9a;Myo9a;Myo9a;Myo9a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,8,270163,ENSMUSG00000039585,conserved gene and region,9,59875212,59875313,102,*,102,9,0.529411765,1.35,0.088235294,0.00000109,CpGisland,TRUE,NA,NRS
976,cg22149755,-0.00000324,0.00000304,-1.066559417,0.287000761,loss,ns,-0.000013,0.00000516,-2.523387144,0.01212274,neg,ns,0.002852556,0.00151168,1.887010984,0.06009305,pos,ns,1.221175754,-0.0000818,0.000052,-1.573745768,0.116566232,neg,ns,0.962203492,Qk,Qk_threeUTR,17,10213356,10213405,10213404,10213405,50,-,AACCTCGGTCTGCGGTCACAATCCTTTGGTAAGGATGGACACGCATATCG,3' UTR,17,10202601,10319380,116780,2,Qk-204,105975,Qk-204;Qk-202;Qk-203;Qk-201;Qk-206;Qk-205,Qk;Qk;Qk;Qk;Qk;Qk,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,12,17,19317,ENSMUSG00000062078,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17310,cg00545696,-0.0000236,0.000011,-2.150302296,0.032304423,loss,ns,0.000047,0.0000186,2.523150079,0.012130748,pos,ns,0.015911033,0.005459905,2.914159511,0.003825979,pos,ns,2.417257373,-0.000569448,0.000187766,-3.032758527,0.00262803,neg,ns,0.729985351,Gm5356,Gm5356_Intergenic_upstream,8,89656113,89656162,89656113,89656114,50,+,CGTAAGCAGCTGTGCTGAAATTGTAAAATCTCACCCTTGTGTCTGGTTTC,Distal Intergenic,8,89186946,89187560,615,2,Gm5356-201,-468553,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,23,23,384862,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14069,cg09219505,0.00000896,0.00000318,2.820507354,0.005103852,gain,ns,-0.0000136,0.0000054,-2.523114695,0.012131943,neg,ns,-0.005073196,0.001581797,-3.207235679,0.001480185,neg,ns,2.829684041,0.000117319,0.0000544,2.15668751,0.03179863,pos,ns,0.068249477,Evx2,Evx2_Intergenic_downstream,2,74649102,74649151,74649102,74649103,50,+,CGCGTCCAAGGCTGCTGCTTAATCCAATGAAGGCAATTTCCGAGGATAAT,Distal Intergenic,2,74655616,74659419,3804,2,Evx2-202,10268,Evx2-201,Evx2,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,35,14029,ENSMUSG00000001815,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
7949,cg07117806,0.0000264,0.00000775,3.408823336,0.0007387,gain,ns,-0.0000332,0.0000132,-2.523099305,0.012132463,neg,ns,-0.008637586,0.003854874,-2.240692231,0.025753957,neg,ns,1.589156035,0.000245209,0.000132569,1.849670113,0.065312752,pos,ns,0.86795149,Runx2,Runx2_threeUTR,17,44658626,44658675,44658626,44658627,50,-,CGCCCTAAATCACTGAGGCGGTCAGAGAACAAACTAGGTTTAGAGTCATC,3' UTR,17,44495987,44736176,240190,2,Runx2-212,77501,Runx2-212;Runx2-214;Runx2-203;Runx2-202;Runx2-213;Runx2-204;Runx2-210;Runx2-211;Runx2-207;Runx2-201;Runx2-209;Runx2-205;Runx2-206,Runx2;Runx2;Runx2;Runx2;Runx2;Runx2;Runx2;Runx2;Runx2;Runx2;Runx2;Runx2;Runx2,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,10,20,12393,ENSMUSG00000039153,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17878,cg21299277,0.0000129,0.00000812,1.587176605,0.113492077,gain,ns,-0.0000348,0.0000138,-2.522648719,0.012147698,neg,ns,-0.004765165,0.004042925,-1.178643164,0.239444186,neg,ns,0.620795704,0.000323452,0.000139036,2.326389913,0.020642145,pos,ns,0.854269974,Phf21a,Phf21a_Intron,2,92302046,92302095,92302094,92302095,50,+,CCTCTTCCCTCTAGTTAAAAATGGAATGCAAACAGGGCTTCAAAGTGACG,"Intron (Phf21a-201/Phf21a, intron 4 of 15)",2,92093117,92364666,271550,1,Phf21a-201,208929,Phf21a-201;Phf21a-202;Phf21a-204;Phf21a-209;Phf21a-208;Phf21a-207;Phf21a-219;Phf21a-206;Phf21a-205;Phf21a-203;Phf21a-213;Phf21a-215,Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,21,192285,ENSMUSG00000058318,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13435,cg25552492,-0.0000158,0.0000101,-1.569840764,0.117472267,loss,ns,0.0000432,0.0000171,2.522571837,0.012150299,pos,ns,0.009538174,0.005015067,1.901903624,0.058110544,pos,ns,1.235745057,-0.000290104,0.000172468,-1.682074454,0.093561378,neg,ns,0.460556477,Lgi3,Lgi3_Exon,14,70531120,70531169,70531120,70531121,50,+,CGCTCGGCTTCTGCCTCATGCTGCAAGTCAGCGCTAAGAGGCCCCCCAAG,Promoter (<=1kb),14,70530685,70538027,7343,1,Lgi3-202,435,Lgi3-202;Lgi3-201;Lgi3-203,Lgi3;Lgi3;Lgi3,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,213469,ENSMUSG00000033595,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22033,cg16741216,-0.0000116,0.00000865,-1.336977881,0.182210128,loss,ns,0.0000371,0.0000147,2.522035641,0.012168454,pos,ns,0.015266783,0.004306884,3.544739954,0.000453584,pos,ns,3.343342371,-0.000580638,0.000148113,-3.920224602,0.000108928,neg,ns,0.806908191,Elavl4,Elavl4_Intron,4,110249393,110249442,110249393,110249394,50,-,CGGTGAACTACCAAATTAGCATTCTTTCAGTAAAGGAATCTGCTTGTTTA,"Intron (Elavl4-204/Elavl4, intron 2 of 6)",4,110203722,110287527,83806,2,Elavl4-204,38085,Elavl4-204;Elavl4-201;Elavl4-203;Elavl4-202;Elavl4-205;Elavl4-206;Elavl4-207;Elavl4-208;Elavl4-210;Elavl4-212;Elavl4-209,Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,36,15572,ENSMUSG00000028546,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12471,cg27028730,0.0000225,0.00000465,4.840599143,0.00000205,gain,ns,-0.0000199,0.0000079,-2.521729321,0.012178837,neg,ns,-0.003312602,0.002313254,-1.432009886,0.153148483,neg,ns,0.8148873,0.00011223,0.0000796,1.410766171,0.15931627,pos,ns,0.924653528,Gm13577,Gm13577_Intergenic_downstream,2,64451726,64451775,64451774,64451775,50,-,GGAAAGCCAATGACTTGTTAGTACCCCTAGCAGCAGTGTGAACAGATGCG,Distal Intergenic,2,64474745,64474949,205,2,Gm13577-201,23223,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,17,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21117,cg14279547,0.0000177,0.00000896,1.975988004,0.04904252,gain,ns,0.0000384,0.0000152,2.521629115,0.012182235,pos,ns,0.007806727,0.004458845,1.7508408,0.08096246,pos,ns,1.091716305,-0.000282205,0.000153339,-1.840395542,0.066665897,neg,ns,0.185834984,Barhl2,Barhl2_Intergenic_upstream,5,106471930,106471979,106471930,106471931,50,+,CGAGCTGGTGACAAGCATTTGAATCCGCTAAGTTCTGTCAAGGGAGCTGA,Distal Intergenic,5,106452523,106458166,5644,2,Barhl2-201,-13764,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,27,104382,ENSMUSG00000034384,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
19352,cg25078366,0.00027877,0.0000244,11.41386602,2.00E-25,gain,yes,-0.000104628,0.0000415,-2.521583592,0.012183779,neg,ns,-0.01742281,0.012155982,-1.433270446,0.152788316,neg,ns,0.815909855,0.000614562,0.000418043,1.470092572,0.142550872,pos,ns,0.513676219,Dnajc22,Dnajc22_Promoter,15,99093659,99093708,99093659,99093660,50,-,CGGTCCCGCCATCCATCCTGTCCGCCGGCAATTAGGCGGCCAGACAAAGA,Promoter (<=1kb),15,99093170,99100917,7748,1,Dnajc22-202,489,Dnajc22-202,Dnajc22,0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,6,8,72778,ENSMUSG00000038009,conserved gene and region,15,99093593,99093959,367,*,367,36,0.697547684,0.811348563,0.098092643,2.41E-27,CpGisland,TRUE,U3,Pr-B
19381,cg04710768,-0.0000377,0.0000113,-3.329010927,0.000976648,loss,ns,0.0000485,0.0000193,2.521462565,0.012187884,pos,ns,-0.003479722,0.005640788,-0.6168859,0.537762777,neg,ns,0.269409262,0.0000546,0.000193986,0.281267227,0.778693091,pos,ns,0.438515709,Zfp366,Zfp366_Promoter,13,99184660,99184709,99184660,99184661,50,-,CGAAGGTACTCATCTGAGAAAAAGAGAACGAAGTATTGTTCCTGTTCTCT,Promoter (<=1kb),13,99184823,99250656,65834,1,Zfp366-201,-163,Zfp366-201,Zfp366,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,2,238803,ENSMUSG00000050919,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4508,cg03320248,-0.0000056,0.00000319,-1.756253281,0.080032591,loss,ns,0.0000137,0.00000542,2.521412733,0.012189575,pos,ns,0.002968092,0.0015873,1.869899495,0.062440177,pos,ns,1.204535873,-0.000041,0.0000546,-0.751228193,0.453085232,neg,ns,0.918395709,Med27,Med27_Intergenic_upstream,2,29320720,29320769,29320768,29320769,50,-,CTGGGAAGTCTGGTGTTTTTCAATGCCTTCACAACTCTAATTTTAAGCCG,Distal Intergenic,2,29346819,29524793,177975,1,Med27-201,-26099,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,2,68975,ENSMUSG00000026799,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27012,cg07981074,-0.0000661,0.0000133,-4.973905142,0.00000109,loss,yes,-0.000057,0.0000226,-2.521403751,0.01218988,neg,ns,-0.00240372,0.006618757,-0.363167906,0.716726972,neg,ns,0.144646252,-0.000364166,0.000227618,-1.599896398,0.110640177,neg,ns,0.475978485,Rbm39,Rbm39_Exon,2,156177419,156177468,156177419,156177420,50,+,CGAAGTGGTAACATTTCAAGTTGTCAAAGGGTAAAGGGAACAGGAATAAG,"Exon (Rbm39-213/Rbm39, exon 1 of 4)",2,156147239,156180238,33000,2,Rbm39-203,2770,Rbm39-203;Rbm39-217;Rbm39-215;Rbm39-201;Rbm39-225;Rbm39-223;Rbm39-204;Rbm39-216;Rbm39-221;Rbm39-213;Rbm39-214;Rbm39-218;Rbm39-219;Rbm39-210;Rbm39-224;Rbm39-212;Rbm39-202;Rbm39-208;Rbm39-222;Rbm39-205;Rbm39-211,Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,13,170791,ENSMUSG00000027620,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
5849,cg03176465,0.0000729,0.0000127,5.755808399,2.07E-08,gain,yes,-0.0000543,0.0000215,-2.521327235,0.012192477,neg,ns,-0.025743401,0.006305737,-4.082536109,0.0000567,neg,ns,4.246104537,0.000395248,0.000216854,1.822648394,0.069319848,pos,ns,0.668669921,Prps1l1,Prps1l1_Intergenic_downstream,12,35008521,35008570,35008569,35008570,50,+,GGTAATGAAAACAGCTGCCACATTATGAACCTAGGCACAAACAGAGGCCG,Distal Intergenic,12,34984761,34986436,1676,1,Prps1l1-201,23760,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,75456,ENSMUSG00000092305,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12850,cg03956142,0.00000201,0.00000579,0.347603908,0.728373562,gain,ns,0.0000248,0.00000984,2.521182591,0.012197387,pos,ns,0.006751667,0.002882849,2.342011952,0.019812839,pos,ns,1.703053285,-0.000169525,0.0000991,-1.709942539,0.088277101,neg,ns,0.907435869,Rsrc1,Rsrc1_Intron,3,67340773,67340822,67340821,67340822,50,-,TTTTACAAGGCCAGCCAGCAACAAAAGAGCAGTAATTTATGAGCTCAGCG,"Intron (Rsrc1-206/Rsrc1, intron 7 of 9)",3,66981390,67356559,375170,1,Rsrc1-206,359383,Rsrc1-206;Rsrc1-203;Rsrc1-202;Rsrc1-201;Rsrc1-209;Rsrc1-205,Rsrc1;Rsrc1;Rsrc1;Rsrc1;Rsrc1;Rsrc1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,37,66880,ENSMUSG00000034544,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3493,cg09083630,-0.00000634,0.00000296,-2.144177268,0.032796099,loss,ns,-0.0000127,0.00000502,-2.521122099,0.012199441,neg,ns,-0.00379476,0.001470824,-2.580023301,0.010339397,neg,ns,1.985504774,0.0000626,0.0000506,1.237195123,0.216950997,pos,ns,0.885287293,Bcl11a,Bcl11a_Exon,11,24164908,24164957,24164956,24164957,50,-,CTTCAAGAACTGTAGCAATCTCACTGTCCACAGGAGAAGCCACACGGGCG,"Exon (Bcl11a-202/Bcl11a, exon 4 of 4)",11,24078056,24173194,95139,1,Bcl11a-201,86852,Bcl11a-201;Bcl11a-203;Bcl11a-202;Bcl11a-204;Bcl11a-206,Bcl11a;Bcl11a;Bcl11a;Bcl11a;Bcl11a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,51,98,14025,ENSMUSG00000000861,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18156,cg21871721,0.0000613,0.00000855,7.175325124,5.35E-12,gain,yes,-0.0000366,0.0000145,-2.520576662,0.012217975,neg,ns,0.012824875,0.004254298,3.01456897,0.002786002,pos,ns,2.555018528,-0.000173434,0.000146305,-1.185427527,0.236756338,neg,ns,0.149632705,Hsd17b12,Hsd17b12_Intron,2,94243840,94243889,94243840,94243841,50,+,CGCATTACTCACTTTTTGCAGTCACGACTTGGGAATCCGTGCTGGTTCCA,"Intron (Mir670hg-205/Mir670hg-205, intron 2 of 5)",2,94032689,94157964,125276,2,Hsd17b12-201,-85876,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,14,19,56348,ENSMUSG00000027195,conserved gene but different region,2,94243768,94243904,137,*,137,10,0.525547445,1.064491065,0.072992701,0.00000123,CpGisland,TRUE,U13,Hc-P
12119,cg18974733,0.0000493,0.000012,4.094845087,0.000054,gain,ns,-0.0000516,0.0000205,-2.520141216,0.01223279,neg,ns,0.037664539,0.005994783,6.282886581,1.12E-09,pos,ns,8.949232885,-0.000493882,0.00020616,-2.395625507,0.017184868,neg,ns,0.449018945,Hnrnph3,Hnrnph3_Exon,10,63018779,63018828,63018827,63018828,50,+,TGTGTTTCCCCAGAGCATTTTCTGCTATCTCCTTTGAAGCAAACTGCACG,"Exon (Hnrnph3-201/Hnrnph3, exon 3 of 10)",10,63014664,63023894,9231,2,Hnrnph3-201,5066,Hnrnph3-201;Hnrnph3-202;Hnrnph3-204;Hnrnph3-205;Hnrnph3-206;Hnrnph3-203;Rufy2-202;Rufy2-205,Hnrnph3;Hnrnph3;Hnrnph3;Hnrnph3;Hnrnph3;Hnrnph3;Rufy2;Rufy2,0;0;0;-2611;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,7,432467,ENSMUSG00000020069,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26363,cg17002377,0.000000501,0.000000705,0.711192128,0.47749996,gain,ns,0.00000302,0.0000012,2.52013004,0.012233171,pos,ns,0.000194713,0.000350869,0.554945451,0.579332158,pos,ns,0.237072363,-0.0000122,0.0000121,-1.00913987,0.313694572,neg,ns,0.984668399,Htr2c,Htr2c_Exon,X,147169658,147169707,147169658,147169659,50,+,CGCTATATCGCTGGATCGGTATGTAGCAATACGTAATCCTATTGAGCATA,"Exon (Htr2c-201/Htr2c, exon 5 of 6)",20,146962513,147197274,234762,1,Htr2c-201,207145,Htr2c-201;Htr2c-202;Htr2c-207;Htr2c-203,Htr2c;Htr2c;Htr2c;Htr2c,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,8,15560,ENSMUSG00000041380,conserved gene and region,X,147169604,147169752,149,*,149,10,0.483221477,1.157731158,0.067114094,0.00000263,CpGisland,TRUE,U15,NS
12264,cg24367661,-0.0000164,0.0000107,-1.541947765,0.124106431,loss,ns,-0.0000456,0.0000181,-2.520023972,0.012236782,neg,ns,-0.010969125,0.00530355,-2.068260925,0.039444538,neg,ns,1.404013127,-0.000210208,0.000182389,-1.15252713,0.249992493,neg,ns,0.604857189,Epha3,Epha3_Exon,16,63652461,63652510,63652509,63652510,50,+,GGCCTCCTGTGTCCAGGGGCCAACTCCAGTCCAGGATAACTGAGGTCTCG,"Exon (Epha3-201/Epha3, exon 5 of 17)",16,63543534,63864158,320625,2,Epha3-201,211648,Epha3-201;Epha3-203;Epha3-206;Epha3-205,Epha3;Epha3;Epha3;Epha3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,8,13837,ENSMUSG00000052504,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21318,cg12836276,-0.000000333,0.00000259,-0.128447174,0.89787839,loss,ns,-0.0000111,0.0000044,-2.519723784,0.012247007,neg,ns,-0.005212472,0.001290357,-4.039558704,0.0000676,neg,ns,4.170206662,0.0000742,0.0000444,1.673002732,0.095335547,pos,ns,0.925352178,Nfat5,Nfat5_fiveUTR,8,107338795,107338844,107338843,107338844,50,-,ATTGTACACTGCAGATGCTTCTTCAGCTCCCTCCTCTTCCTCCATGGGCG,Promoter (<=1kb),8,107338807,107379516,40710,1,Nfat5-202,0,Nfat5-213;Nfat5-214;Nfat5-206;Nfat5-211;Nfat5-203;Nfat5-201;Nfat5-209;Nfat5-205;Nfat5-202;Nfat5-207,Nfat5;Nfat5;Nfat5;Nfat5;Nfat5;Nfat5;Nfat5;Nfat5;Nfat5;Nfat5,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,TRUE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,17,54446,ENSMUSG00000003847,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10442,cg16680582,-0.0000138,0.00000854,-1.621604029,0.105904757,loss,ns,0.0000365,0.0000145,2.519545544,0.012253082,pos,ns,0.012939983,0.004249552,3.045022882,0.002526207,pos,ns,2.597531099,-0.000339637,0.000146142,-2.32402665,0.020770213,neg,ns,0.883382398,Slc44a1,Slc44a1_threeUTR,4,53565380,53565429,53565428,53565429,50,-,ATGACTTTGTTTTCTAGGCTTCGGGAGCAAGTTCTGCTTGAACCTAGCCG,3' UTR,4,53440413,53622478,182066,1,Slc44a1-201,124967,Slc44a1-201;Slc44a1-205;Slc44a1-204;Slc44a1-202,Slc44a1;Slc44a1;Slc44a1;Slc44a1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,3,100434,ENSMUSG00000028412,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23320,cg19775329,0.0000305,0.0000137,2.224228671,0.026853067,gain,ns,0.0000588,0.0000233,2.519358641,0.012259455,pos,ns,0.012722819,0.006833677,1.861782198,0.063579966,pos,ns,1.196679709,-0.0000386,0.00023501,-0.164175489,0.869699987,neg,ns,0.590652407,Cdca7l,Cdca7l_Intron,12,117806206,117806255,117806206,117806207,50,+,CGGTATCATTTGCTTGTCACTTAATGACTGACCAGCCTGCCTGAATCATT,"Intron (Cdca7l-202/Cdca7l, intron 1 of 4)",12,117804289,117870047,65759,1,Cdca7l-202,1917,Cdca7l-202,Cdca7l,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,7,217946,ENSMUSG00000021175,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3978,cg15042350,-0.0000105,0.00000393,-2.68030874,0.007748704,loss,ns,0.0000168,0.00000668,2.519010995,0.012271318,pos,ns,0.003367064,0.00195753,1.720057856,0.08641992,pos,ns,1.063386138,-0.000168766,0.0000673,-2.506951198,0.01268919,neg,ns,0.916382303,5730522E02Rik,5730522E02Rik_Intron,11,26100337,26100386,26100337,26100338,50,-,CGCACAGTTCCTGTCAGTGGCATAATTAAAATTTTATACTTACAGAAAAA,"Intron (5730522E02Rik-202/5730522E02Rik, intron 1 of 5)",11,25617668,26210569,592902,2,5730522E02Rik-202,110183,5730522E02Rik-202;5730522E02Rik-201;5730522E02Rik-203,5730522E02Rik;5730522E02Rik;5730522E02Rik,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,90,70626,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20941,cg00060978,0.00000752,0.00000591,1.271972966,0.204336076,gain,ns,0.0000253,0.00001,2.518492467,0.012289029,pos,ns,-0.000658778,0.002940696,-0.224021137,0.822888425,neg,ns,0.084659047,0.00000394,0.00010113,0.038964458,0.968943806,pos,ns,0.87722375,Fgf16,Fgf16_Exon,X,105773972,105774021,105774020,105774021,50,+,TTGAAGAAAACTGGTACAACACCTATGCCTCAACCTTGTACAAACATTCG,"Exon (Fgf16-201/Fgf16, exon 3 of 3)",20,105764279,105774939,10661,1,Fgf16-201,9693,Fgf16-201,Fgf16,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,80903,ENSMUSG00000031230,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27507,cg23619357,0.0000191,0.0000131,1.454426483,0.146839831,gain,ns,0.0000562,0.0000223,2.517309265,0.01232953,pos,ns,0.011015675,0.006544285,1.683251162,0.09333321,pos,ns,1.029963796,0.0000949,0.000225057,0.421674685,0.673554736,pos,ns,0.735629508,Pbx1,Pbx1_Intergenic_upstream,1,168676917,168676966,168676965,168676966,50,-,CAGGGCGATCCACTAGGAAGAGCTCTGGGAGAATCCAACTGTCAGAGCCG,Distal Intergenic,1,168119364,168432270,312907,2,Pbx1-208,-244696,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,17,84,18514,ENSMUSG00000052534,conserved gene and region,1,168676888,168677048,161,*,161,10,0.527950311,0.897435897,0.062111801,0.00000521,CpGisland,TRUE,U15,NS
9888,cg11529288,0.0000295,0.00000566,5.212383262,0.000000341,gain,yes,-0.0000242,0.00000961,-2.517266597,0.012330993,neg,ns,-0.004084172,0.002816673,-1.449998697,0.148069841,neg,ns,0.829533389,0.0000113,0.0000969,0.116846726,0.907057178,pos,ns,0.864744802,Gm46574,Gm46574_Intergenic_downstream,17,51371188,51371237,51371188,51371189,50,-,CGTTTTGGCTTCGGAAATGTTTCTTGTCATTAGCATTTAAAAAAAGCTAT,Distal Intergenic,17,51484292,51484721,430,2,Gm46574-201,113533,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,19,108168316,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11667,cg03029285,-0.0000113,0.00000438,-2.583717149,0.010231682,loss,ns,-0.0000187,0.00000744,-2.516710594,0.012350068,neg,ns,0.002244308,0.002180392,1.029313935,0.3041346,pos,ns,0.516934169,-0.00023754,0.000075,-3.167892809,0.001688511,neg,ns,0.896887806,Mprip,Mprip_Exon,11,59737454,59737503,59737454,59737455,50,+,CGTCCCTAAGGCCATCAGGATCAGCCACCGAGAAGCCTTCCAGGTGGAGA,"Exon (Mprip-206/Mprip, exon 4 of 21)",11,59662495,59780860,118366,1,Mprip-202,74959,Mprip-202;Mprip-201;Mprip-203;Mprip-204;Mprip-206;Mprip-205;Mprip-208,Mprip;Mprip;Mprip;Mprip;Mprip;Mprip;Mprip,0;0;0;0;0;0;-3346,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,26936,ENSMUSG00000005417,conserved gene and region,11,59737442,59737579,138,*,138,11,0.652173913,0.759,0.079710145,0.000000119,CpGisland,TRUE,NA,NRS
20047,cg04154281,0.0000728,0.0000228,3.191020698,0.001562982,gain,ns,-0.0000976,0.0000388,-2.516204033,0.01236747,neg,ns,0.027819752,0.01135947,2.44903608,0.014877342,pos,ns,1.827474657,-0.000809498,0.000390651,-2.07217565,0.039075531,neg,ns,0.373728976,Ubtf,Ubtf_Exon,11,102311004,102311053,102311052,102311053,50,-,CCCCAGGGAGTCCTTCACCTCCTTCGTAGTGGCCTGCAAACCAAAAGCCG,"Exon (Ubtf-210/Ubtf, exon 8 of 21)",11,102304560,102319096,14537,2,Ubtf-210,8043,Ubtf-210;Ubtf-213;Ubtf-202;Ubtf-203;Ubtf-204;Ubtf-201;Ubtf-205;Ubtf-206;Ubtf-209;Ubtf-212;Ubtf-211;Ubtf-208;Ubtf-207,Ubtf;Ubtf;Ubtf;Ubtf;Ubtf;Ubtf;Ubtf;Ubtf;Ubtf;Ubtf;Ubtf;Ubtf;Ubtf,0;0;0;0;0;0;0;0;0;-1564;-1096;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,8,21429,ENSMUSG00000020923,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12235,cg01200261,0.0000157,0.00000526,2.984841906,0.003063034,gain,ns,-0.0000225,0.00000894,-2.51604611,0.012372899,neg,ns,-0.012136415,0.002619962,-4.632286944,0.00000533,neg,ns,5.273243138,0.000378758,0.0000901,4.203739736,0.0000344,pos,ns,0.857336217,Ptch1,Ptch1_Intron,13,63554770,63554819,63554818,63554819,50,+,TAGCTGCTCGGTGCTAATTATGCTAATCACCTGTCTAACTCGCTGCTGCG,"Intron (Ptch1-201/Ptch1, intron 2 of 22)",13,63508328,63565735,57408,2,Ptch1-201,10916,Ptch1-201;Ptch1-204;Ptch1-206;Ptch1-202;Ptch1-207;Ptch1-203;Ptch1-205,Ptch1;Ptch1;Ptch1;Ptch1;Ptch1;Ptch1;Ptch1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,36,19206,ENSMUSG00000021466,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
52,cg27277235,-0.000000318,0.00000415,-0.076518186,0.939056206,loss,ns,-0.0000178,0.00000706,-2.515992555,0.012374741,neg,ns,-0.002539653,0.00206764,-1.228286184,0.220271265,neg,ns,0.657042154,-0.000103545,0.0000711,-1.456200573,0.146349209,neg,ns,0.862414312,Cnot3,Cnot3_threeUTR,7,3658720,3658769,3658768,3658769,50,+,CTTCATCTTCTACTATCTGGAGGTACAGCAGGGCCCCCGGGGCAGCCTCG,3' UTR,7,3645290,3661108,15819,1,Cnot3-205,13430,Cnot3-205;Cnot3-201;Cnot3-203;Cnot3-204;Cnot3-202;Cnot3-206;Leng1-201,Cnot3;Cnot3;Cnot3;Cnot3;Cnot3;Cnot3;Leng1,0;0;0;0;0;-621;7071,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,4,232791,ENSMUSG00000035632,conserved gene and region,7,3658757,3658854,98,*,98,9,0.795918367,0.583333333,0.091836735,0.000000773,CpGisland,TRUE,U10,Tr-S
1631,cg07118757,-0.0000224,0.0000109,-2.057957756,0.040429963,loss,ns,0.0000466,0.0000185,2.515908378,0.012377636,pos,ns,0.014327971,0.005426529,2.640356652,0.008701163,pos,ns,2.06042269,-0.000438501,0.000186618,-2.349724107,0.01941432,neg,ns,0.842358432,Zfp521,Zfp521_Intron,18,13899111,13899160,13899111,13899112,50,+,CGGTGTGACAAATCAAGAGTTAGGTAATGTCTACAAAACTCAATTTTCTG,"Intron (Zfp521-201/Zfp521, intron 3 of 7)",18,13687013,13972787,285775,2,Zfp521-201,73627,Zfp521-201;Zfp521-204;Zfp521-203;Zfp521-202,Zfp521;Zfp521;Zfp521;Zfp521,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,81,225207,ENSMUSG00000024420,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5530,cg19330479,0.0000782,0.0000103,7.602514351,3.49E-13,gain,yes,-0.000044,0.0000175,-2.515818254,0.012380737,neg,ns,0.009292479,0.005118778,1.815370506,0.070433126,pos,ns,1.152223039,-0.0000925,0.000176034,-0.525396086,0.599683457,neg,ns,0.498313271,Hdac9,Hdac9_Intron,12,34200391,34200440,34200439,34200440,50,+,AGTGCATTTGTGTGGTTGTTTGAGAAAGCCTCTAGTCAGCCAATGGCCCG,"Intron (Hdac9-205/Hdac9, intron 20 of 24)",12,34047580,34528328,480749,2,Hdac9-205,327888,Hdac9-205;Hdac9-204;Hdac9-206;Hdac9-210;Hdac9-207,Hdac9;Hdac9;Hdac9;Hdac9;Hdac9,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,19,31,79221,ENSMUSG00000004698,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
727,cg13902620,-0.0000236,0.00000999,-2.35844705,0.018972065,loss,ns,0.0000427,0.000017,2.515394926,0.01239531,pos,ns,0.005233009,0.004972621,1.052364314,0.293452031,pos,ns,0.53246288,-0.000243837,0.000171008,-1.425877863,0.154909785,neg,ns,0.703957983,Nipbl,Nipbl_Exon,15,8323410,8323459,8323458,8323459,50,-,AATATTCTTTCAATCAGCATATCATAATACTGTTCAGCAAGCTGAGGTCG,"Exon (Nipbl-201/Nipbl, exon 29 of 47)",15,8290617,8444463,153847,2,Nipbl-201,121004,Nipbl-201,Nipbl,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,19,36,71175,ENSMUSG00000022141,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23696,cg12869689,-0.00000451,0.00000346,-1.304073332,0.193176038,loss,ns,-0.0000148,0.00000588,-2.515171262,0.012403016,neg,ns,-0.000510405,0.001721558,-0.296478787,0.767062994,neg,ns,0.115168969,-0.0000469,0.0000592,-0.791741421,0.429116859,neg,ns,0.909749946,Wnk1,Wnk1_Exon,6,119932650,119932699,119932698,119932699,50,+,GAGTAAAGGTGTTACACACAAAGAGCCAAGCAGGGCGTACTCAGAAATCG,"Exon (Wnk1-220/Wnk1, exon 2 of 3)",6,119923969,120038672,114704,2,Wnk1-202,105973,Wnk1-202;Wnk1-203;Wnk1-223;Wnk1-204;Wnk1-224;Wnk1-209;Wnk1-216;Wnk1-220;Wnk1-213;Wnk1-225;Wnk1-222;Wnk1-219,Wnk1;Wnk1;Wnk1;Wnk1;Wnk1;Wnk1;Wnk1;Wnk1;Wnk1;Wnk1;Wnk1;Wnk1,0;0;0;0;0;0;0;0;0;0;15727;15406,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,9,232341,ENSMUSG00000045962,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12766,cg04679505,0.0000601,0.00000591,10.16844538,3.77E-21,gain,yes,-0.0000252,0.00001,-2.51496899,0.012409988,neg,ns,0.006344678,0.002939291,2.158574041,0.031650504,pos,ns,1.49961937,-0.0000458,0.000101082,-0.45319044,0.650728658,neg,ns,0.158745265,Phox2b,Phox2b_fiveUTR,5,67099223,67099272,67099223,67099224,50,-,CGTCTATTGGGCTGGCACTGGGGAACTGAGCTGTCCAACCTCCCTATCAT,Promoter (<=1kb),5,67094399,67099301,4903,2,Phox2b-201,29,Phox2b-201;Phox2b-202,Phox2b;Phox2b,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,28,18935,ENSMUSG00000012520,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
15180,cg11953805,0.0000101,0.0000109,0.930939905,0.352609052,gain,ns,0.0000465,0.0000185,2.514739772,0.012417894,pos,ns,0.00758664,0.005415779,1.400839943,0.162262141,pos,ns,0.789782798,0.0000789,0.000186248,0.423769256,0.672027986,pos,ns,0.471617495,Polg,Polg_Intron,7,79511494,79511543,79511542,79511543,50,+,TTAGGCAGACTTCATTAATGTTACCAAATATACCTTGGCACATTTACTCG,"Intron (Mir9-3hg-205/Mir9-3hg-205, intron 1 of 1)",7,79446231,79466362,20132,2,Polg-201,-45132,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,16,18975,ENSMUSG00000039176,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
19469,cg14542590,0.0000111,0.0000044,2.519534956,0.012253443,gain,ns,-0.0000188,0.00000747,-2.514736086,0.012418021,neg,ns,-0.003782263,0.002188269,-1.728427091,0.084907404,neg,ns,1.071054437,0.0000487,0.0000753,0.647220714,0.517968076,pos,ns,0.639898342,Foxn3,Foxn3_Exon,12,99388710,99388759,99388758,99388759,50,-,CAGTTCAGGTTGGTCAGCTCTTCATCTTCCATGGCCCCCTCTTCTAATCG,"Exon (Foxn3-201/Foxn3, exon 2 of 6)",12,99190078,99393797,203720,2,Foxn3-201,5038,Foxn3-201;Foxn3-209;Foxn3-202;Foxn3-207;Foxn3-208;Foxn3-205;Foxn3-214,Foxn3;Foxn3;Foxn3;Foxn3;Foxn3;Foxn3;Foxn3,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,17,71375,ENSMUSG00000033713,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9474,cg03597491,-0.0000174,0.00000625,-2.79164282,0.005569579,loss,ns,0.0000267,0.0000106,2.514437659,0.01242832,pos,ns,-0.0000893,0.00311028,-0.028723314,0.977103744,neg,ns,0.010059322,0.0000897,0.000106962,0.839011399,0.402109423,pos,ns,0.699148752,Zbtb16,Zbtb16_Intron,9,48823063,48823112,48823111,48823112,50,+,AACAGGACAAGTTCTCCTGACCATAAAGCTAATAGGAACTTCCTCGCACG,"Intron (Zbtb16-201/Zbtb16, intron 2 of 6)",9,48654297,48835945,181649,2,Zbtb16-201,12833,Zbtb16-201;Zbtb16-202,Zbtb16;Zbtb16,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,37,235320,ENSMUSG00000066687,conserved gene and region,9,48823107,48823165,59,*,59,8,0.711864407,1.072727273,0.13559322,0.000000192,CpGisland,TRUE,NA,NRS
11572,cg08553905,-0.00000257,0.00000182,-1.411627795,0.15906249,loss,ns,0.00000778,0.00000309,2.513768446,0.012451443,pos,ns,0.000940134,0.00090645,1.037160202,0.300469525,pos,ns,0.522199569,-0.00000111,0.0000312,-0.03573019,0.971520494,neg,ns,0.067587961,Fbxo33,Fbxo33_fiveUTR,12,59219448,59219497,59219448,59219449,50,+,CGGGGCTGCGGCACTGACAAGAACAACAACATCAATGACTAGGAAGAAGG,Promoter (<=1kb),12,59200655,59219725,19071,2,Fbxo33-201,228,Fbxo33-201;Fbxo33-203,Fbxo33;Fbxo33,0;-647,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,11,70611,ENSMUSG00000035329,conserved gene but different region,12,59218669,59219457,789,*,789,92,0.70468948,0.946289826,0.116603295,1.43E-76,CpGisland,TRUE,U1,Pr-A
19197,cg06055800,0.0000282,0.00000774,3.639323243,0.000320141,gain,ns,0.000033,0.0000131,2.513559155,0.012458683,pos,ns,0.007165119,0.003849935,1.861101079,0.063676386,pos,ns,1.196021596,0.000237158,0.000132399,1.791234418,0.074231092,pos,ns,0.240754836,Wnt10b,Wnt10b_threeUTR,15,98772576,98772625,98772576,98772577,50,+,CGGAGCACGTTGTGCCCACGGCCACAGCACAGGCTGCCACAGCCATCCAA,3' UTR,15,98770712,98778143,7432,2,Wnt10b-206,5518,Wnt10b-206;Wnt10b-201;Wnt10b-203;Wnt10b-204;Wnt10b-202;Wnt10b-207;Wnt10b-205,Wnt10b;Wnt10b;Wnt10b;Wnt10b;Wnt10b;Wnt10b;Wnt10b,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,4,22410,ENSMUSG00000022996,conserved gene and region,15,98772546,98772692,147,*,147,12,0.680272109,0.706730769,0.081632653,1.97E-08,CpGisland,TRUE,U3,Pr-B
18397,cg11342191,0.0000136,0.0000125,1.093086691,0.275204433,gain,ns,0.0000532,0.0000212,2.512886329,0.012481982,pos,ns,0.011293996,0.006197032,1.822484731,0.069344722,pos,ns,1.158986587,0.000110151,0.000213115,0.516860018,0.605622422,pos,ns,0.836352809,Arhgef9,Arhgef9_Exon,X,95130871,95130920,95130871,95130872,50,+,CGTCGATCTGGCCCCACCACCAATCCTTGTTGGAAGCATCCAAGACTTTG,"Exon (Arhgef9-202/Arhgef9, exon 2 of 10)",20,95048935,95166361,117427,2,Arhgef9-202,35441,Arhgef9-202;Arhgef9-217;Arhgef9-205;Arhgef9-207;Arhgef9-210;Arhgef9-203;Arhgef9-209;Arhgef9-206;Arhgef9-208;Arhgef9-204;Arhgef9-216;Arhgef9-219;Arhgef9-201;Arhgef9-218;Arhgef9-220;Arhgef9-213;Arhgef9-214,Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,14,236915,ENSMUSG00000025656,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19291,cg01663821,0.000117279,0.0000244,4.812889147,0.00000233,gain,ns,0.000104019,0.0000414,2.512705671,0.012488244,pos,ns,0.016847321,0.012128033,1.389122229,0.165792627,pos,ns,0.780434787,0.000181411,0.000417082,0.434952828,0.663899306,pos,ns,0.255817485,Hao2,Hao2_Exon,3,98941219,98941268,98941267,98941268,50,-,ATAGGCCTAGTGGTTCTCGTCAGGTGCAGAAAGCCAATAAATCACCAGCG,"Exon (5730437C11Rik-201/5730437C11Rik-201, exon 1 of 2)",3,98874521,98893239,18719,2,Hao2-201,-48029,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,56185,ENSMUSG00000027870,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6891,cg00267231,-0.0000134,0.0000069,-1.948820409,0.052218726,loss,ns,0.0000294,0.0000117,2.512530684,0.012494313,pos,ns,0.009349325,0.003432485,2.723777538,0.006819948,pos,ns,2.166218942,-0.000274544,0.000118043,-2.325799998,0.020674049,neg,ns,0.880077782,Npas2,Npas2_Exon,1,39312962,39313011,39312962,39312963,50,-,CGATTTAGAGTTTTATTGCCATCTTCTCAGAGGCAGCTTGAACCCAAAGG,"Exon (Npas2-201/Npas2, exon 7 of 21)",1,39194212,39363236,169025,1,Npas2-201,118750,Gm3617-201;Npas2-201,Gm3617;Npas2,-1888;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,18143,ENSMUSG00000026077,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11546,cg15677669,-0.00000664,0.00000644,-1.030518105,0.30357019,loss,ns,0.0000275,0.0000109,2.512044796,0.012511177,pos,ns,0.006822631,0.003204819,2.128866544,0.03405339,pos,ns,1.467839654,-0.000204136,0.000110213,-1.852185291,0.064949741,neg,ns,0.872249286,Fgf13,Fgf13_Exon,X,59125894,59125943,59125894,59125895,50,-,CGAGGTGTACAAGTATCCCTCACTGTTCATTGCCAAGTACAGCTTGGTTT,"Exon (Fgf13-201/Fgf13, exon 3 of 5)",20,59062145,59134436,72292,2,Fgf13-201,8493,Fgf13-201;Fgf13-202;Fgf13-203;Fgf13-207,Fgf13;Fgf13;Fgf13;Fgf13,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,9,14168,ENSMUSG00000031137,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23879,cg26820000,-0.0000208,0.0000037,-5.635196486,3.93E-08,loss,yes,0.0000158,0.00000628,2.511962601,0.012514032,pos,ns,0.011446417,0.001840885,6.217889273,1.63E-09,pos,ns,8.788738395,-0.000363935,0.0000633,-5.748650922,2.15E-08,neg,yes,0.923606603,Nfyc,Nfyc_Exon,4,120773665,120773714,120773713,120773714,50,-,AGCTCACCTGACGCTTTGGAGGTTTCAGTTCATCTCTTGGAACAATATCG,"Exon (Nfyc-204/Nfyc, exon 5 of 10)",4,120757438,120815712,58275,2,Nfyc-204,41998,Nfyc-204;Nfyc-201;Nfyc-203;Nfyc-202;Nfyc-206;Nfyc-207,Nfyc;Nfyc;Nfyc;Nfyc;Nfyc;Nfyc,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,4,18046,ENSMUSG00000032897,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26118,cg09998912,-0.00000365,0.00000155,-2.353504372,0.01922156,loss,ns,0.00000661,0.00000263,2.511652134,0.012524821,pos,ns,0.002120876,0.000771498,2.749037075,0.006327626,pos,ns,2.198759203,-0.0000737,0.0000265,-2.776967199,0.005820855,neg,ns,0.974099589,Gm2505,Gm2505_Intergenic_downstream,3,143998203,143998252,143998251,143998252,50,-,AATATAATCCAAAAAAGCAAGGTAATTGCTTCACTTATCGGTTATCATCG,Distal Intergenic,3,143872995,143873819,825,1,Gm2505-201,125257,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,37,100039938,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6688,cg03461257,-0.00000216,0.00000376,-0.574060571,0.566343094,loss,ns,-0.000016,0.00000638,-2.511351172,0.012535287,neg,ns,-0.005450478,0.001869228,-2.915898284,0.003805296,neg,ns,2.4196115,0.000201515,0.0000643,3.134830267,0.001884198,pos,ns,0.90005244,Dennd1a,Dennd1a_Intron,2,38023489,38023538,38023537,38023538,50,-,CTCTGAAGCCACCAAAACGTGGCCTCAAGAGTCTGCCAAGAAGCTTCACG,"Intron (Dennd1a-201/Dennd1a, intron 8 of 21)",2,37798991,38287375,488385,2,Dennd1a-201,263837,Dennd1a-201;Dennd1a-207;Dennd1a-210;Dennd1a-204;Dennd1a-202,Dennd1a;Dennd1a;Dennd1a;Dennd1a;Dennd1a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,46,227801,ENSMUSG00000035392,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18233,cg20429488,0.0000301,0.00000575,5.234500232,0.000000306,gain,yes,-0.0000245,0.00000978,-2.510641707,0.01255999,neg,ns,-0.002516673,0.002863884,-0.878762275,0.380210803,neg,ns,0.419975547,0.000043,0.0000985,0.436558187,0.662735691,pos,ns,0.829025389,Snx27,Snx27_threeUTR,3,94561899,94561948,94561947,94561948,50,+,TGAGGAGGTACAGATAACACTGTCAAGATCAATTCCTTCTCGCCTGCTCG,3' UTR,3,94497544,94582716,85173,2,Snx27-201,20768,Snx27-201;Snx27-202;Snx27-207;Snx27-208;Snx27-205,Snx27;Snx27;Snx27;Snx27;Snx27,0;0;0;0;-104,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,2,76742,ENSMUSG00000028136,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25386,cg10055766,0.000061,0.0000123,4.977470131,0.00000107,gain,yes,-0.0000523,0.0000208,-2.510418072,0.012567786,neg,ns,0.001483919,0.006097874,0.243350192,0.807895076,pos,ns,0.092645039,-0.0000299,0.000209705,-0.142781612,0.886555417,neg,ns,0.568467185,Kif21b,Kif21b_Exon,1,136167172,136167221,136167220,136167221,50,+,AGCGACTCCTCTTTGTCGGAGGTCCTGAGGTACACACAGAATGTCTCTCG,"Exon (Kif21b-201/Kif21b, exon 28 of 35)",1,136131389,136177998,46610,1,Kif21b-201,35783,Kif21b-201;Kif21b-204;Kif21b-206;Kif21b-203;Kif21b-205,Kif21b;Kif21b;Kif21b;Kif21b;Kif21b,0;0;6814;4223;-2093,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,16565,ENSMUSG00000041642,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5802,cg26746476,0.000000466,0.00000218,0.214183476,0.830544794,gain,ns,-0.00000928,0.0000037,-2.51015257,0.012577046,neg,ns,-0.001563274,0.001083317,-1.443044629,0.150017582,neg,ns,0.823857838,-0.0000339,0.0000373,-0.909695904,0.36368964,neg,ns,0.912790343,Kdm3b,Kdm3b_Exon,18,34828947,34828996,34828947,34828948,50,+,CGGTCAGAAGATGGGCAGCCAATGGTGCTCAAACTCAAGGACTGGCCTCC,"Exon (Kdm3b-201/Kdm3b, exon 18 of 24)",18,34777047,34838660,61614,1,Kdm3b-201,51900,Kdm3b-201;Kdm3b-206;Kdm3b-202,Kdm3b;Kdm3b;Kdm3b,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,6,277250,ENSMUSG00000038773,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14943,cg01989428,0.0000745,0.0000058,12.85167051,1.36E-30,gain,yes,-0.0000247,0.00000985,-2.509944266,0.012584316,neg,ns,0.00149256,0.002886071,0.517159869,0.605413353,pos,ns,0.217948005,0.0000195,0.0000993,0.196886958,0.844045019,pos,ns,0.193344528,Pax3,Pax3_Exon,1,78193837,78193886,78193885,78193886,50,+,AATTTTCTTCTCCACGTCAGGCGTTGTCACCTGCTTTAAGAGAACAGGCG,"Exon (Pax3-201/Pax3, exon 3 of 9)",1,78101267,78196838,95572,2,Pax3-201,2952,Pax3-201;Pax3-202;Pax3-203,Pax3;Pax3;Pax3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,17,18505,ENSMUSG00000004872,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
17018,cg19618621,-0.00000441,0.00000427,-1.032504843,0.302640509,loss,ns,0.0000182,0.00000725,2.509229076,0.012609305,pos,ns,0.006133059,0.002124394,2.886968834,0.004163051,pos,ns,2.380588241,-0.000146973,0.0000731,-2.011738105,0.045112545,neg,ns,0.910146194,Mllt3,Mllt3_threeUTR,4,87873914,87873963,87873962,87873963,50,-,TTCACTGGTGGATGGCCTTCAAGATGCAGGAATAAGTCATAATCAAAGCG,3' UTR,4,87769925,88033364,263440,2,Mllt3-201,159401,Mllt3-201;Mllt3-203;Mllt3-204;Mllt3-205;Mllt3-206,Mllt3;Mllt3;Mllt3;Mllt3;Mllt3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,13,70122,ENSMUSG00000028496,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23344,cg07953353,0.0000573,0.0000233,2.456978875,0.014558713,gain,ns,-0.0000993,0.0000396,-2.508625532,0.012630428,neg,ns,0.021081912,0.011597384,1.817816146,0.07005739,pos,ns,1.154546046,0.000167129,0.000398833,0.419044682,0.675473682,pos,ns,0.183937762,Socs3,Socs3_fiveUTR,11,117968198,117968247,117968246,117968247,50,-,CCCGGCGGCGGGAAACTTGCTGTGGGTGACCATGGCGCACGGAGCCAGCG,Promoter (<=1kb),11,117966079,117969186,3108,2,Socs3-201,939,Socs3-201;Socs3-202;Socs3-203,Socs3;Socs3;Socs3,0;1800;1204,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,9,12702,ENSMUSG00000053113,conserved gene and region,11,117967759,117969258,1500,*,1500,136,0.671333333,0.805559943,0.090666667,1.37E-96,CpGisland,TRUE,NA,NRS
22294,cg00004555,-0.0000029,0.0000049,-0.592107231,0.554210379,loss,ns,-0.0000209,0.00000832,-2.507245273,0.012678852,neg,ns,-0.004556685,0.002438052,-1.868986068,0.062567582,neg,ns,1.203650628,-0.000000776,0.0000838,-0.009256922,0.992620104,neg,ns,0.079627677,Setd5,Setd5_Intron,6,113079662,113079711,113079710,113079711,50,-,AGCTTGAGTAGTGCTGGCTGCTGTCTCCAGGGAAGGACAGCAGTGCAGCG,"Intron (Setd5-209/Setd5, intron 1 of 2)",6,113077365,113107561,30197,1,Setd5-209,2297,Setd5-209;Setd5-201;Setd5-206;Setd5-205;Setd5-203,Setd5;Setd5;Setd5;Setd5;Setd5,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,19,72895,ENSMUSG00000034269,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
1280,cg00116289,-0.0000044,0.00000254,-1.734599799,0.083805694,loss,ns,-0.0000108,0.00000431,-2.507139169,0.012682581,neg,ns,-0.000940627,0.001262971,-0.744773347,0.456972982,neg,ns,0.340109476,0.00000426,0.0000434,0.098181269,0.921851808,pos,ns,0.946187754,Zfr,Zfr_Exon,15,12170802,12170851,12170850,12170851,50,-,TCAATCCATTTTAGATGTAACCTCGGGTATGGTGAAAGACCCACCGGACG,"Exon (Zfr-201/Zfr, exon 16 of 20)",15,12117831,12185683,67853,1,Zfr-201,52971,Zfr-201;Zfr-207;Zfr-208;Zfr-209;Zfr-206,Zfr;Zfr;Zfr;Zfr;Zfr,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,12,22763,ENSMUSG00000022201,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3874,cg22598885,-0.0000173,0.0000043,-4.02858224,0.0000706,loss,ns,-0.0000183,0.00000731,-2.507070702,0.012684988,neg,ns,-0.00072866,0.002140854,-0.340359327,0.733816466,neg,ns,0.134412547,-0.0001,0.0000736,-1.357675865,0.175554012,neg,ns,0.903319064,Nsd3,Nsd3_Intron,8,25676597,25676646,25676645,25676646,50,+,GCCTCTCGGAGGGAACACTGCTTGGCGGAGCTCCAAGAAAAGACATCGCG,"Intron (Nsd3-211/Nsd3, intron 9 of 9)",8,25601601,25677214,75614,1,Nsd3-211,74996,Nsd3-211;Nsd3-203;Nsd3-208;Nsd3-204;Nsd3-206;Nsd3-201;Nsd3-205,Nsd3;Nsd3;Nsd3;Nsd3;Nsd3;Nsd3;Nsd3,0;74313;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,14,234135,ENSMUSG00000054823,conserved gene and region,8,25676544,25676764,221,*,221,19,0.601809955,0.956056466,0.085972851,1.56E-13,CpGisland,TRUE,U10,Tr-S
15275,cg23620526,-0.0000373,0.00000713,-5.232090307,0.000000309,loss,yes,0.0000303,0.0000121,2.506438076,0.012707248,pos,ns,-0.0049358,0.003547412,-1.391380586,0.165107717,neg,ns,0.782232629,0.000202908,0.000121995,1.663245368,0.097273926,pos,ns,0.688446699,Gm5909,Gm5909_Intergenic_upstream,8,80149766,80149815,80149766,80149767,50,+,CGTTGCGGAATAGATGACTTAGAGGTTCCACACAAATTGAATTTTGAGGC,Distal Intergenic,8,80110806,80112086,1281,2,Gm5909-201,-37680,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,546075,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15377,cg25925945,0.00000424,0.00000254,1.667149711,0.096494531,gain,ns,0.0000108,0.00000432,2.506433749,0.0127074,pos,ns,0.002932772,0.001265185,2.318058764,0.021096723,pos,ns,1.675784994,-0.0000494,0.0000435,-1.13476703,0.257349601,neg,ns,0.050311178,Nckap1,Nckap1_Exon,2,80580902,80580951,80580902,80580903,50,+,CGTTGAGGATGGTGAGCTTCTCCGCCAGCTTCTGCTGACTGGGCTGCAGC,Promoter (<=1kb),2,80500512,80581264,80753,2,Nckap1-201,313,Nckap1-201;Nckap1-202,Nckap1;Nckap1,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,7,50884,ENSMUSG00000027002,conserved gene and region,2,80580430,80581665,1236,*,1236,168,0.737055016,1.018781278,0.13592233,2.93E-152,CpGisland,TRUE,U1,Pr-A
20318,cg24708075,0.0000205,0.00000331,6.179282417,2.02E-09,gain,yes,-0.0000141,0.00000562,-2.506336923,0.01271081,neg,ns,0.003529815,0.001647758,2.142193216,0.03295674,pos,ns,1.482055751,-0.000145887,0.0000567,-2.574498432,0.0105024,neg,ns,0.074545783,Hoxc5,Hoxc5_Intron,15,102998097,102998146,102998097,102998098,50,+,CGGTTGTTTGCAGAAAATTTACAGCTGAGTAATAAAAGTTTACGATCGAC,"Intron (Hoxc5-202/Hoxc5, intron 1 of 1)",15,102967443,103015676,48234,1,Hoxc5-202,30654,Hoxc5-202;Hoxc6-202;Hoxc6-203;Hoxc8-201;Hoxc8-202,Hoxc5;Hoxc6;Hoxc6;Hoxc8;Hoxc8,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,46,134,15424,ENSMUSG00000022485,conserved gene but different region,15,102997967,102998098,132,*,132,9,0.613636364,0.776470588,0.068181818,0.00000904,CpGisland,TRUE,U13,Hc-P
24519,cg01643535,0.0000224,0.00000911,2.456019338,0.014596881,gain,ns,-0.0000388,0.0000155,-2.50620139,0.012715584,neg,ns,0.01397259,0.004535391,3.080791016,0.002249596,pos,ns,2.647895384,-0.000466423,0.000155972,-2.990432357,0.003009083,neg,ns,0.432356823,Ncdn,Ncdn_Exon,4,126752055,126752104,126752055,126752056,50,+,CGAGGCCATGATGCTCGCCTTGCCCAACTGTGAACACAAGAGGGACTGAG,"Exon (Ncdn-201/Ncdn, exon 2 of 7)",4,126743750,126753409,9660,2,Ncdn-201,1305,AU040320-209;AU040320-210;AU040320-203;AU040320-201;AU040320-202;AU040320-206;AU040320-205;AU040320-207;Ncdn-201;Ncdn-202;Ncdn-203,AU040320;AU040320;AU040320;AU040320;AU040320;AU040320;AU040320;AU040320;Ncdn;Ncdn;Ncdn,-1440;-1449;0;0;0;-1690;-1710;-1722;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,3,26562,ENSMUSG00000028833,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16144,cg14530275,0.0000192,0.00000612,3.12952026,0.001917511,gain,ns,-0.0000261,0.0000104,-2.506010525,0.012722311,neg,ns,-0.007952173,0.003047151,-2.609707059,0.009501751,neg,ns,2.022196369,0.000329278,0.000104791,3.14222619,0.001838689,pos,ns,0.876021664,Bnc2,Bnc2_Intron,4,84523823,84523872,84523823,84523824,50,-,CGACTTGGAATTTTAACACAATGCCATTTCCCTAGTTTAACCTGAAAGGA,"Intron (Bnc2-201/Bnc2, intron 3 of 7)",4,84275095,84675034,399940,2,Bnc2-201,151162,Bnc2-201;Bnc2-202;Bnc2-214;Bnc2-215;Bnc2-206;Bnc2-211;Bnc2-217;Bnc2-207;Bnc2-212;Bnc2-203;Bnc2-209;Bnc2-221;Bnc2-204;Bnc2-220;Bnc2-208,Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,91,242509,ENSMUSG00000028487,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23239,cg20468818,-0.00000599,0.00000396,-1.511140408,0.131771342,loss,ns,0.0000169,0.00000673,2.505926187,0.012725284,pos,ns,0.002960696,0.00197303,1.500583172,0.13448119,pos,ns,0.871338458,-0.0000455,0.0000679,-0.671112081,0.502648866,neg,ns,0.919548561,Xylt1,Xylt1_Intron,7,117579259,117579308,117579259,117579260,50,-,CGTTAATGGCCCATAATGTGATTACTATGAGGATTTTTATTAGGAAAATT,"Intron (Xylt1-202/Xylt1, intron 3 of 6)",7,117380979,117635185,254207,1,Xylt1-202,198280,Xylt1-202;Xylt1-201,Xylt1;Xylt1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,6,233781,ENSMUSG00000030657,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23554,cg06611798,0.0000161,0.000011,1.458980928,0.145582844,gain,ns,0.000047,0.0000188,2.505686589,0.012733734,pos,ns,0.01895127,0.005494582,3.449083123,0.000640357,pos,ns,3.193577844,-0.000345276,0.000188958,-1.827260321,0.068621921,neg,ns,0.240315674,Sp8,Sp8_threeUTR,12,118851498,118851547,118851498,118851499,50,-,CGACTAACTTTGGCCTTTGTGTATTTCCTGAAGGTAATATTGTTAACTGT,3' UTR,12,118846329,118852576,6248,1,Sp8-201,5169,Sp8-201;Sp8-202,Sp8;Sp8,0;3912,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,29,320145,ENSMUSG00000048562,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
8931,cg01689298,-0.0000107,0.00000418,-2.565940803,0.010759417,loss,ns,0.0000178,0.0000071,2.505166418,0.012752097,pos,ns,0.004675074,0.002078647,2.249095134,0.025208201,pos,ns,1.598458147,-0.000182534,0.0000715,-2.553481125,0.011143674,neg,ns,0.933900749,Gm13469,Gm13469_Intergenic_downstream,2,46327134,46327183,46327182,46327183,50,-,GATTTATGACAGGAATCTTTAATTTCTGTTTTTAAATATGTTACCCACCG,Distal Intergenic,2,46406220,46406569,350,2,Gm13469-201,79435,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,27,383690,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27506,cg24043916,0.0000276,0.0000205,1.347092767,0.178934224,gain,ns,0.0000872,0.0000348,2.504904922,0.012761337,pos,ns,0.019950186,0.010198537,1.95618112,0.051341553,pos,ns,1.289531003,0.000306376,0.000350727,0.87354557,0.383041953,pos,ns,0.607636628,Pbx1,Pbx1_Intergenic_upstream,1,168676874,168676923,168676922,168676923,50,-,AGGCTGTTCCTTGTCGGAATGTGTTTCATCCGGTTTAAAATCCCAGGGCG,Distal Intergenic,1,168119364,168432270,312907,2,Pbx1-208,-244653,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,17,84,18514,ENSMUSG00000052534,conserved gene and region,1,168676888,168677048,161,*,161,10,0.527950311,0.897435897,0.062111801,0.00000521,CpGisland,TRUE,U15,NS
265,cg07391782,0.000100287,0.00000884,11.34204988,3.57E-25,gain,yes,-0.0000376,0.000015,-2.504786293,0.01276553,neg,ns,0.016538452,0.004400773,3.758079005,0.000204561,pos,ns,3.689176913,-0.000433059,0.000151342,-2.861455297,0.004503729,neg,ns,0.131147056,Gm4828,Gm4828_Intergenic_downstream,17,4907166,4907215,4907214,4907215,50,-,CAATAAGTATTTATTATGTTGTTCTGAGCATACAGCTTTAAATTTGCCCG,Distal Intergenic,17,4880626,4881115,490,1,Gm4828-201,26589,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,3,224460,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
2751,cg25976696,0.000000665,0.00000293,0.226850096,0.820689826,gain,ns,-0.0000125,0.00000498,-2.504696992,0.012768688,neg,ns,-0.003762366,0.001458147,-2.580238519,0.010333094,neg,ns,1.985769631,0.0000506,0.0000501,1.009806472,0.313375546,pos,ns,0.905004343,Smarca4,Smarca4_Exon,9,21677928,21677977,21677976,21677977,50,+,ACTGAAGTCCTCTATTTATCCACAGAGCAGACACTGCAGCACGGGCAGCG,"Exon (Smarca4-203/Smarca4, exon 24 of 27)",9,21616169,21704217,88049,1,Smarca4-201,61759,Smarca4-201;Smarca4-202;Smarca4-204;Smarca4-203,Smarca4;Smarca4;Smarca4;Smarca4,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,6,20586,ENSMUSG00000032187,conserved gene but different region,9,21677969,21678028,60,*,60,7,0.766666667,0.833333333,0.116666667,0.00000466,CpGisland,TRUE,U10,Tr-S
27741,cg05568345,0.000149457,0.00000853,17.51817688,3.06E-48,gain,yes,-0.0000363,0.0000145,-2.504083058,0.012790416,neg,ns,0.000568651,0.004246225,0.133919295,0.893553291,pos,ns,0.048879541,0.0000981,0.000146027,0.67185615,0.502175662,pos,ns,0.270837188,Ythdf1,Ythdf1_Exon,2,180894069,180894118,180894117,180894118,50,+,AATGTCTATACAATTAAGGCACGCGGTGAATGCCAAGAGAGGCGCCTCCG,"Exon (Mir124a-3-201/Mir124a-3-201, exon 1 of 1)",2,180911768,180920387,8620,2,Ythdf1-203,26269,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,228994,ENSMUSG00000038848,mapped to different genes,2,180892700,180894599,1900,*,1900,214,0.697368421,0.934712644,0.112631579,1.61E-173,CpGisland,TRUE,U3,Pr-B
18367,cg20149183,0.0000843,0.00000995,8.473512717,9.76E-16,gain,yes,-0.0000423,0.0000169,-2.503895275,0.012797068,neg,ns,-0.005985637,0.004953211,-1.208435677,0.227800707,neg,ns,0.642444932,0.000886845,0.000170341,5.206306634,0.000000351,pos,yes,0.557826053,Otp,Otp_Promoter,13,94875488,94875537,94875488,94875489,50,-,CGGAGTGGGGGACTCTCCGGGCGCTGACATTTGCAGGCTGCCCTCCTGAT,Promoter (<=1kb),13,94875602,94885130,9529,1,Otp-201,-114,Otp-201,Otp,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,27,34,18420,ENSMUSG00000021685,conserved gene but different region,13,94875299,94875591,293,*,293,22,0.682593857,0.651111111,0.075085324,2.54E-14,CpGisland,TRUE,U13,Hc-P
23225,cg13029792,-0.00000347,0.0000036,-0.961790449,0.336904473,loss,ns,-0.0000153,0.00000612,-2.503604809,0.012807364,neg,ns,-0.003428807,0.001793815,-1.911461061,0.056867256,neg,ns,1.245137723,0.000125936,0.0000617,2.041468838,0.042050635,pos,ns,0.89812485,Eri3,Eri3_Intron,4,117556463,117556512,117556463,117556464,50,-,CGCTGGCACCTCAGGAGGCCATTAGTATGCCTGTTCAGACCCTCTGTGTC,"Intron (Eri3-201/Eri3, intron 2 of 8)",4,117550365,117674297,123933,1,Eri3-201,6098,Eri3-201;Eri3-205,Eri3;Eri3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,82,97,140546,ENSMUSG00000033423,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8234,cg14668389,-0.0000128,0.00000871,-1.467812581,0.143168995,loss,ns,0.0000371,0.0000148,2.503163323,0.012823028,pos,ns,-0.001516775,0.00433638,-0.349779036,0.726742041,neg,ns,0.138619716,0.000134295,0.000149128,0.900537643,0.36853325,pos,ns,0.745392698,Gm5246,Gm5246_Intergenic_downstream,19,44885958,44886007,44885958,44885959,50,-,CGTTAAATTGTCTTGCAAAAATGTTAAATGATAAATTGGGTAATGTTATT,Distal Intergenic,19,44851009,44851979,971,1,Gm5246-201,34998,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,20,383450,NA,mapped to different genes,19,44885732,44885959,228,*,228,13,0.557017544,0.76987013,0.057017544,0.000000304,CpGisland,TRUE,U13,Hc-P
4498,cg26828604,-0.0000186,0.00000952,-1.956290022,0.051328668,loss,ns,0.0000405,0.0000162,2.502877235,0.012833187,pos,ns,0.015263827,0.004738424,3.221287608,0.001411737,pos,ns,2.850246218,-0.000585902,0.000162954,-3.595503759,0.000376568,neg,ns,0.827744594,Ppp4r3b,Ppp4r3b_Exon,11,29211174,29211223,29211174,29211175,50,-,CGATTGAATATGTTCAGACATTCAAAGGATTGAAGACTAAATATGAGCAA,"Exon (Ppp4r3b-201/Ppp4r3b, exon 13 of 16)",11,29172890,29220797,47908,1,Ppp4r3b-201,38284,Ppp4r3b-202;Ppp4r3b-201;Ppp4r3b-203;Ppp4r3b-204;Ppp4r3b-206,Ppp4r3b;Ppp4r3b;Ppp4r3b;Ppp4r3b;Ppp4r3b,38284;0;13976;0;-2401,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,104570,ENSMUSG00000020463,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20218,cg01315721,0.0000487,0.00000417,11.6718401,2.45E-26,gain,yes,-0.0000177,0.00000709,-2.502796623,0.012836051,neg,ns,0.004569082,0.002077357,2.199468824,0.02858261,pos,ns,1.543898111,-0.000114321,0.0000714,-1.600239767,0.110563986,neg,ns,0.092527557,Hoxc11,Hoxc11_Promoter,15,102954278,102954327,102954326,102954327,50,+,ATTGATTTTCATAATGTTTCTGCGGTGTTTGCAAACCAATCGCCTGAACG,Promoter (<=1kb),15,102954427,102957708,3282,1,Hoxc11-201,-100,Hoxc11-201,Hoxc11,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,12,24,109663,ENSMUSG00000001656,mapped to different genes,15,102954221,102954599,379,*,379,28,0.519788918,1.094020619,0.073878628,6.96E-18,CpGisland,TRUE,U13,Hc-P
27124,cg24218236,-0.0000188,0.00000822,-2.287363212,0.02284807,loss,ns,-0.0000349,0.000014,-2.502435771,0.012848878,neg,ns,-0.011888777,0.004091018,-2.906068076,0.003923585,neg,ns,2.406316962,0.000190787,0.00014069,1.356082267,0.17605992,pos,ns,0.781226553,Ppp1r16b,Ppp1r16b_Exon,2,158746619,158746668,158746667,158746668,50,-,AGCCACCTGCGGCCACATCAACCTGGTGAAGATCCTCGTTCAGTAGTACG,"Exon (Ppp1r16b-204/Ppp1r16b, exon 5 of 11)",2,158665398,158759334,93937,1,Ppp1r16b-204,81221,Ppp1r16b-204;Ppp1r16b-202;Ppp1r16b-203;Ppp1r16b-201;Ppp1r16b-205,Ppp1r16b;Ppp1r16b;Ppp1r16b;Ppp1r16b;Ppp1r16b,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,228852,ENSMUSG00000037754,conserved gene but different region,2,158746565,158746668,104,*,104,10,0.605769231,1.048387097,0.096153846,0.000000092,CpGisland,TRUE,U11,Tr-P
20936,cg03134204,0.0000186,0.00000327,5.692810642,0.000000029,gain,yes,-0.0000139,0.00000555,-2.501627545,0.012877648,neg,ns,0.00155647,0.001626642,0.956860511,0.339383275,pos,ns,0.469309564,-0.0000153,0.0000559,-0.273556907,0.784607322,neg,ns,0.920006327,Relch,Relch_threeUTR,1,105731219,105731268,105731267,105731268,50,+,GGGTCCTCACTAAAGCTACAGTCCCCATTTATGCAACAGGAGTCCTTACG,3' UTR,1,105663861,105754072,90212,1,Relch-205,67358,Relch-205;Relch-201;Relch-202;Relch-210;Relch-212;Relch-203;Relch-204,Relch;Relch;Relch;Relch;Relch;Relch;Relch,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,6,227446,ENSMUSG00000026319,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
781,cg23152556,-0.000000358,0.00000183,-0.195851041,0.844855075,loss,ns,0.00000776,0.0000031,2.501204703,0.012892723,pos,ns,0.002378483,0.000908675,2.617529777,0.009291376,pos,ns,2.031919988,-0.0000673,0.0000312,-2.153688889,0.032035304,neg,ns,0.958388151,Pum2,Pum2_threeUTR,12,8713358,8713407,8713406,8713407,50,+,AGTCGTACTCCTGGAAGTCGTCAAGCCTCTCCAACTGAAGTAGTTGAGCG,3' UTR,12,8674134,8751454,77321,1,Pum2-203,39224,Pum2-203;Pum2-216;Pum2-201;Pum2-202;Pum2-207;Pum2-204;Pum2-210;Pum2-209;Pum2-212;Pum2-205;Pum2-208;Pum2-213;Pum2-214,Pum2;Pum2;Pum2;Pum2;Pum2;Pum2;Pum2;Pum2;Pum2;Pum2;Pum2;Pum2;Pum2,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,7,11,80913,ENSMUSG00000020594,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24214,cg20155124,-0.0000128,0.00000638,-2.007504312,0.045563577,loss,ns,0.0000271,0.0000108,2.501188262,0.012893309,pos,ns,0.014192891,0.003174056,4.471531657,0.0000109,pos,ns,4.962195694,-0.000410751,0.000109156,-3.762990601,0.000200757,neg,ns,0.877175935,Zcchc8,Zcchc8_threeUTR,5,123709429,123709478,123709429,123709430,50,+,CGGTTGCCCCAATTTATCAAGGCAAAAATTAGTAAAATACAGGACACTTC,3' UTR,5,123698294,123721100,22807,2,Zcchc8-204,11622,Zcchc8-204;Zcchc8-201;Zcchc8-206;Zcchc8-203;Zcchc8-208;Zcchc8-205;Zcchc8-202;Zcchc8-209,Zcchc8;Zcchc8;Zcchc8;Zcchc8;Zcchc8;Zcchc8;Zcchc8;Zcchc8,0;0;0;-947;0;0;11384;11296,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,1,70650,ENSMUSG00000029427,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24445,cg20382443,0.00000184,0.000000739,2.497105177,0.013039691,gain,ns,-0.00000314,0.00000126,-2.501045965,0.012898386,neg,ns,-0.000635724,0.000367686,-1.728988008,0.084806807,neg,ns,1.071569286,0.0000209,0.0000126,1.649897047,0.099976819,pos,ns,0.984903059,Map7d1,Map7d1_Exon,4,126238567,126238616,126238615,126238616,50,+,GCTTGTTGATTATAGAGTCCACGTGTTTGGGCAGGTTAACTGCCGACACG,"Exon (Map7d1-203/Map7d1, exon 6 of 18)",4,126232167,126240111,7945,2,Map7d1-204,1495,Map7d1-204;Map7d1-203;Map7d1-201;Map7d1-202;Map7d1-205,Map7d1;Map7d1;Map7d1;Map7d1;Map7d1,0;0;0;0;-3791,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,245877,ENSMUSG00000028849,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
979,cg24042348,-0.00000285,0.00000532,-0.535823191,0.592464978,loss,ns,-0.0000226,0.00000905,-2.500882887,0.012904207,neg,ns,-0.005750321,0.002650196,-2.169772184,0.030783435,neg,ns,1.51168292,0.0000162,0.0000911,0.177273787,0.85940911,pos,ns,0.914898277,Qk,Qk_threeUTR,17,10214156,10214205,10214156,10214157,50,-,CGTTCTTGAATTCTTAGCCTTTCGTTGGGAAAGCCATACCTAAAGATAAA,3' UTR,17,10202601,10319380,116780,2,Qk-204,105175,Qk-204;Qk-202;Qk-203;Qk-201;Qk-206;Qk-205,Qk;Qk;Qk;Qk;Qk;Qk,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,12,17,19317,ENSMUSG00000062078,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16677,cg19434731,-0.00000796,0.00000548,-1.452173114,0.147464817,loss,ns,0.0000233,0.00000931,2.500593755,0.012914532,pos,ns,0.008045797,0.002727461,2.949921454,0.003420592,pos,ns,2.465898734,-0.000202432,0.0000938,-2.15819298,0.031680376,neg,ns,0.908518656,Srbd1,Srbd1_Intron,17,86036147,86036196,86036195,86036196,50,+,TCCAAGGAAAATTAATTACTTATGACTTACAGTTGTAAAAGCAAACAACG,"Intron (Srbd1-205/Srbd1, intron 1 of 4)",17,85984665,86040431,55767,2,Srbd1-205,4235,Srbd1-205;Srbd1-201;Srbd1-204;Srbd1-206,Srbd1;Srbd1;Srbd1;Srbd1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,6,78586,ENSMUSG00000024135,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19043,cg02471603,0.0000532,0.00000646,8.23647033,5.03E-15,gain,yes,-0.0000275,0.000011,-2.50057737,0.012915117,neg,ns,-0.007007288,0.003216376,-2.178628627,0.030112271,neg,ns,1.521256492,0.0000502,0.000110611,0.453763471,0.650316575,pos,ns,0.842008282,Cdk12,Cdk12_Intergenic_downstream,11,98283812,98283861,98283860,98283861,50,-,TATTCATCAGGCTATTAATGTCTTCTCGGCTCAGCTTGATGAACATTGCG,Distal Intergenic,11,98263502,98268011,4510,1,Cdk12-204,20359,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,25,69131,ENSMUSG00000003119,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1542,cg21443720,-0.000094,0.000013,-7.206771838,4.39E-12,loss,yes,0.0000554,0.0000222,2.499279638,0.012961552,pos,ns,-0.005744485,0.006494387,-0.8845308,0.377095264,neg,ns,0.423548922,0.0000678,0.000223341,0.303352979,0.761824358,pos,ns,0.381733872,Sema3a,Sema3a_Intron,5,13527233,13527282,13527281,13527282,50,-,TCATTTCAGGAAGACCTGTTTTCTTTTAGTGGAATTTCCTAAAAGGATCG,"Intron (Sema3a-202/Sema3a, intron 7 of 17)",5,13396784,13600988,204205,1,Sema3a-202,130449,Sema3a-206;Sema3a-202;Sema3a-204;Sema3a-201,Sema3a;Sema3a;Sema3a;Sema3a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,9,20346,ENSMUSG00000028883,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12787,cg08079261,-0.00000104,0.00000346,-0.299947391,0.764418311,loss,ns,0.0000147,0.00000588,2.499152954,0.012966093,pos,ns,0.004472622,0.001723716,2.594755024,0.009915764,pos,ns,2.003673801,-0.0000794,0.0000593,-1.339128072,0.181510032,neg,ns,0.943394013,Rsrc1,Rsrc1_Intron,3,67191253,67191302,67191253,67191254,50,+,CGTAGCTGATGAAAAGCTGACAAGATTTCCACAGTGCCCCATTAGATGAA,"Intron (Rsrc1-206/Rsrc1, intron 5 of 9)",3,66981390,67356559,375170,1,Rsrc1-206,209863,Rsrc1-206;Rsrc1-203;Rsrc1-202;Rsrc1-201;Rsrc1-209;Rsrc1-205,Rsrc1;Rsrc1;Rsrc1;Rsrc1;Rsrc1;Rsrc1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,37,66880,ENSMUSG00000034544,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18171,cg19424704,-0.00000956,0.00000411,-2.322541293,0.020851063,loss,ns,-0.0000175,0.00000699,-2.498935407,0.012973894,neg,ns,-0.001336435,0.002047753,-0.652634744,0.514475446,neg,ns,0.288635348,-0.000140313,0.0000704,-1.992454847,0.047197847,neg,ns,0.836170374,Luc7l3,Luc7l3_threeUTR,11,94293148,94293197,94293196,94293197,50,-,AATGTCTTCACTGGTCCCATTGACCTCATTCTTAGTATCACTTTCCTTCG,3' UTR,11,94287890,94321958,34069,2,Luc7l3-209,28761,Luc7l3-209;Luc7l3-205;Luc7l3-203;Luc7l3-201;Luc7l3-202;Luc7l3-207;Luc7l3-204;Luc7l3-210;Luc7l3-206;Luc7l3-208,Luc7l3;Luc7l3;Luc7l3;Luc7l3;Luc7l3;Luc7l3;Luc7l3;Luc7l3;Luc7l3;Luc7l3,0;0;0;0;0;0;0;5021;5834;7034,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,7,7,67684,ENSMUSG00000020863,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25306,cg14454290,-0.0000056,0.00000235,-2.378762706,0.017976217,loss,ns,-0.00000999,0.000004,-2.4988352,0.012977489,neg,ns,-0.001471231,0.001171069,-1.256314236,0.209947975,neg,ns,0.677888311,0.0000154,0.0000403,0.382480398,0.70236716,pos,ns,0.933084495,Dusp16,Dusp16_threeUTR,6,134718002,134718051,134718050,134718051,50,-,CTTCTGCGTTTAAACTGCTTTTCAAAGGGGCTCTCTTCATGCCAGCTCCG,3' UTR,6,134715468,134792475,77008,2,Dusp16-202,74424,Dusp16-202;Dusp16-201;Dusp16-207;Dusp16-206;Dusp16-205;Dusp16-203,Dusp16;Dusp16;Dusp16;Dusp16;Dusp16;Dusp16,0;0;0;8007;25775;40669,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,4,70686,ENSMUSG00000030203,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14582,cg08747414,0.00000429,0.00000324,1.325135222,0.186102161,gain,ns,-0.0000137,0.0000055,-2.498257504,0.01299823,neg,ns,-0.003652725,0.001610326,-2.268314627,0.023997601,neg,ns,1.619832173,0.0000515,0.0000554,0.930160499,0.353011748,pos,ns,0.873998438,Cyhr1,Cyhr1_Exon,15,76649135,76649184,76649183,76649184,50,-,TAGGTGGATAAAACAGCCAGCGCACATCAAGTGACCATTAGTACACTGCG,"Exon (Cyhr1-202/Cyhr1, exon 3 of 5)",15,76643395,76660061,16667,2,Cyhr1-202,10877,Cyhr1-202;Cyhr1-203;Cyhr1-207;Cyhr1-205;Cyhr1-206,Cyhr1;Cyhr1;Cyhr1;Cyhr1;Cyhr1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,54151,ENSMUSG00000053929,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16164,cg27121137,-0.00000163,0.0000106,-0.154095042,0.877635066,loss,ns,0.0000448,0.0000179,2.498199174,0.013000326,pos,ns,0.002778622,0.005253601,0.528898531,0.597254322,pos,ns,0.223840699,-0.000296898,0.000180671,-1.643309856,0.101332658,neg,ns,0.726917627,Cacna1a,Cacna1a_Exon,8,84544654,84544703,84544654,84544655,50,+,CGTTTCTACATCCGCCGCATGGTCAAAACTCAGGCCTTCTACTGGACTGT,"Exon (Cacna1a-213/Cacna1a, exon 13 of 49)",8,84338639,84640246,301608,1,Cacna1a-213,206015,Cacna1a-213;Cacna1a-201;Cacna1a-202;Cacna1a-211;Cacna1a-204,Cacna1a;Cacna1a;Cacna1a;Cacna1a;Cacna1a,0;0;0;0;-2391,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,12,12286,ENSMUSG00000034656,conserved gene and region,8,84544584,84544817,234,*,234,13,0.551282051,0.744129159,0.055555556,0.000000408,CpGisland,TRUE,NA,NRS
23798,cg17846038,-0.00000634,0.00000532,-1.192797771,0.233860741,loss,ns,-0.0000226,0.00000904,-2.498124083,0.013003025,neg,ns,0.015201334,0.002646984,5.742887669,2.22E-08,pos,ns,7.653561329,-0.000320485,0.000091,-3.520669579,0.000495055,neg,ns,0.851916851,Mbnl2,Mbnl2_Exon,14,120404611,120404660,120404659,120404660,50,+,TTGCTCCCATGGTTCCCCTCCTGAAAGTACCCATGATGCACAGCGCTACG,"Exon (Mbnl2-201/Mbnl2, exon 8 of 9)",14,120275669,120431697,156029,1,Mbnl2-201,128942,Mbnl2-201;Mbnl2-204;Mbnl2-202;Mbnl2-203;Mbnl2-208;Mbnl2-210;Mbnl2-205,Mbnl2;Mbnl2;Mbnl2;Mbnl2;Mbnl2;Mbnl2;Mbnl2,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,16,105559,ENSMUSG00000022139,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10082,cg08741098,0.00015543,0.0000139,11.17384915,1.38E-24,gain,yes,-0.000059,0.0000236,-2.49809924,0.013003918,neg,ns,0.024090947,0.006923244,3.479719609,0.000573872,pos,ns,3.24118495,-0.00080667,0.00023809,-3.388092949,0.000794673,neg,ns,0.149109912,Gm28308,Gm28308_Exon,6,52164525,52164574,52164525,52164526,50,-,CGAGGTCTTGATTGATGAACTTTGAAATGTATCAGCGACAGGGGGAAAAG,"Exon (Hoxa2-201/Hoxa2, exon 1 of 2)",6,52163359,52213339,49981,2,Gm28308-201,48765,Gm28308-201;Hoxa2-201;Hoxa3-201,Gm28308;Hoxa2;Hoxa3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,30,103,,NA,mapped to different genes,6,52164510,52164668,159,*,159,10,0.496855346,1.023166023,0.062893082,0.00000467,CpGisland,TRUE,U3,Pr-B
14771,cg01923669,-0.00000838,0.00000791,-1.058913167,0.290463713,loss,ns,-0.0000336,0.0000134,-2.497923973,0.013010219,neg,ns,0.016959845,0.003937648,4.307100269,0.0000222,pos,ns,4.653134852,-0.000475631,0.000135415,-3.512384094,0.000510134,neg,ns,0.694776385,Gm11146,Gm11146_Intron,16,77594289,77594338,77594337,77594338,50,+,GCCTTTATTCTGGGTTTTTGGCAGGCCACCAGGAGGCTGTCCCTTTCACG,"Intron (Mir99ahg-207/Mir99ahg-207, intron 7 of 7)",16,77588578,77602094,13517,2,Gm11146-201,7756,Gm11146-201,Gm11146,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,21,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8251,cg25112368,-0.000091,0.0000129,-7.078751731,9.77E-12,loss,yes,0.0000546,0.0000218,2.497734472,0.013017034,pos,ns,0.027476592,0.006398966,4.293911372,0.0000235,pos,ns,4.628747183,-0.000689058,0.00022006,-3.131227365,0.001906742,neg,ns,0.847196591,Ebf1,Ebf1_Intron,11,44904134,44904183,44904134,44904135,50,-,CGGTGTAGTATTAGAGTCCTGAGCCAAAGTTCAACACCCTGAAATGAAAT,"Intron (Ebf1-203/Ebf1, intron 8 of 15)",11,44617317,45004995,387679,1,Ebf1-203,286817,Ebf1-203;Ebf1-202;Ebf1-201,Ebf1;Ebf1;Ebf1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,80,13591,ENSMUSG00000057098,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17926,cg03822053,0.00000708,0.00000846,0.836976439,0.403250562,gain,ns,0.0000359,0.0000144,2.497585068,0.01302241,pos,ns,0.002705578,0.004209986,0.642657267,0.520921532,pos,ns,0.283227691,0.000230683,0.000144781,1.593320885,0.112107288,pos,ns,0.769887985,Irx6,Irx6_Intergenic_upstream,8,92570013,92570062,92570061,92570062,50,-,AGACAAATTTATGTGGCCCAAACTTACTCATTCCATTATGGATTTAATCG,Distal Intergenic,8,92674288,92680956,6669,1,Irx6-201,-104275,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,5,64379,ENSMUSG00000031738,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1725,cg19627326,0.0000156,0.00000582,2.684427657,0.007656053,gain,ns,-0.0000247,0.00000989,-2.497573002,0.013022844,neg,ns,-0.007529,0.002895985,-2.599806174,0.009774129,neg,ns,2.009921942,0.000257971,0.0000996,2.590260187,0.010043343,pos,ns,0.821345959,Taf4b,Taf4b_Intron,18,14844823,14844872,14844823,14844824,50,-,CGTTTTGTAAATCTGATACTGCTTATAATTCTTTGGCTGGGAGGCGGTGC,"Intron (Taf4b-201/Taf4b, intron 13 of 14)",18,14783245,14900359,117115,1,Taf4b-201,61578,Taf4b-201;Taf4b-202,Taf4b;Taf4b,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,3,72504,ENSMUSG00000054321,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23189,cg10435518,0.0000679,0.00000692,9.808523011,5.88E-20,gain,yes,-0.0000294,0.0000118,-2.497461465,0.013026859,neg,ns,-0.002416003,0.003443966,-0.701517777,0.483506243,neg,ns,0.315597914,0.000182036,0.000118438,1.536977015,0.125318951,pos,ns,0.732373025,Rnf220,Rnf220_Intron,4,117411837,117411886,117411885,117411886,50,+,GCATGTACCTTAACCCGTTCCTAATAACCATAAAGTTACCATTATTTACG,"Intron (Rnf220-201/Rnf220, intron 2 of 14)",4,117271463,117497052,225590,2,Rnf220-201,85166,Rnf220-201;Rnf220-207,Rnf220;Rnf220,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5709,cg10123920,0.0000123,0.00000598,2.048981878,0.041305463,gain,ns,0.0000254,0.0000102,2.497125943,0.013038943,pos,ns,-0.0035772,0.002978509,-1.20100371,0.230666592,neg,ns,0.637015301,0.000306674,0.000102431,2.993964441,0.002975446,pos,ns,0.880835365,Kirrel3,Kirrel3_Intron,9,34603979,34604028,34603979,34603980,50,-,CGATTTTATTTTCAGATGTGATTGACAGCTGGATGGCTCTGACATTCTCA,"Intron (Kirrel3-202/Kirrel3, intron 2 of 16)",9,34486126,35035280,549155,1,Kirrel3-202,117853,Kirrel3-202;Kirrel3-206;Kirrel3-209;Kirrel3-201;Kirrel3-208;Kirrel3-205,Kirrel3;Kirrel3;Kirrel3;Kirrel3;Kirrel3;Kirrel3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,21,67703,ENSMUSG00000032036,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2979,cg19143997,-0.00000219,0.00000288,-0.75977748,0.447965003,loss,ns,0.0000122,0.0000049,2.496908535,0.013046778,pos,ns,0.00045634,0.001434563,0.318104241,0.750620051,pos,ns,0.124579839,0.000092,0.0000493,1.864081113,0.063255425,pos,ns,0.92821397,Lrmda,Lrmda_Intron,14,22241031,22241080,22241031,22241032,50,-,CGTATGATGCCCTTGCCTTGTTTTATATTGGCTGTCAGCGCTTAACTGGG,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,221319,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206,Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24033,cg22492630,0.000016,0.00000904,1.7749166,0.076892884,gain,ns,0.0000384,0.0000154,2.496756183,0.013052271,pos,ns,0.008300563,0.004500281,1.844454528,0.066070869,pos,ns,1.17998998,-0.0000557,0.000154764,-0.35961579,0.719379323,neg,ns,0.23186679,Cux2,Cux2_Intron,5,122048577,122048626,122048577,122048578,50,+,CGGGTCTCATTTACAAACATTAGCAGGGAATACGATTACCATTGGCCTTC,"Intron (Gm15637-201/Gm15637-201, intron 1 of 2)",5,121856366,122049851,193486,2,Cux2-202,1225,Cux2-202;Cux2-201;Cux2-207;Cux2-203,Cux2;Cux2;Cux2;Cux2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,21,13048,ENSMUSG00000042589,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
20170,cg05238736,0.000000467,0.000000898,0.51970645,0.603639077,gain,ns,0.00000381,0.00000153,2.496621969,0.013057112,pos,ns,0.000788144,0.000446935,1.76344226,0.07881102,pos,ns,1.103413052,-0.00000724,0.0000154,-0.471032839,0.637948571,neg,ns,0.978000453,Mast4,Mast4_Exon,13,102796097,102796146,102796145,102796146,50,+,TTTCTTTGTAGACATGGTTCATCATAATTATTTCATGGTCACAGCAGGCG,"Exon (Mast4-205/Mast4, exon 9 of 27)",13,102732486,103334192,601707,2,Mast4-205,538046,Mast4-205;Mast4-220;Mast4-207;Mast4-218;Mast4-212;Mast4-201;Mast4-208;Mast4-213;Mast4-204;Mast4-215,Mast4;Mast4;Mast4;Mast4;Mast4;Mast4;Mast4;Mast4;Mast4;Mast4,0;0;0;0;0;0;0;0;0;4775,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,8,328329,ENSMUSG00000034751,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16656,cg04920773,0.0000335,0.0000024,13.97349402,9.48E-35,gain,yes,-0.0000102,0.00000407,-2.496403072,0.01306501,neg,ns,0.001391163,0.001192704,1.166394589,0.244351473,pos,ns,0.611985039,-0.00000265,0.000041,-0.064514291,0.94860231,neg,ns,0.069699617,Tbx2,Tbx2_Exon,11,85833415,85833464,85833415,85833416,50,+,CGACCCCAAGGTGACGCTGGAGGCCAAGGAGCTGTGGGACCAGTTCCACA,Promoter (<=1kb),11,85832551,85841948,9398,1,Tbx2-201,864,Tbx2-201,Tbx2,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,14,21385,ENSMUSG00000000093,mapped to different genes,11,85832848,85833430,583,*,583,90,0.804459691,0.963848782,0.154373928,7.11E-88,CpGisland,TRUE,U3,Pr-B
27331,cg06435875,-0.0000161,0.00000603,-2.674066298,0.007891048,loss,ns,0.0000256,0.0000102,2.49628553,0.013069253,pos,ns,0.00594387,0.002999038,1.981925082,0.048370537,pos,ns,1.315419089,-0.000168546,0.000103137,-1.634198289,0.103232299,neg,ns,0.833391343,Ncoa5,Ncoa5_fiveUTR,2,165002902,165002951,165002902,165002903,50,-,CGCTCATAATTTCTGGCCACCAGCACCATGGCATCTGCTTGGGGCATGTT,5' UTR,2,165000357,165034867,34511,2,Ncoa5-201,31916,Ncoa5-201;Ncoa5-202;Ncoa5-203;Ncoa5-204;Slc12a5-207;Slc12a5-201;Slc12a5-208;Slc12a5-205,Ncoa5;Ncoa5;Ncoa5;Ncoa5;Slc12a5;Slc12a5;Slc12a5;Slc12a5,0;0;0;0;0;0;0;6311,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,7,228869,ENSMUSG00000039804,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17724,cg20325673,0.0000492,0.00000793,6.203806031,1.76E-09,gain,yes,-0.0000336,0.0000135,-2.495959093,0.013081043,neg,ns,-0.0000519,0.003945267,-0.013156447,0.98951144,neg,ns,0.004579181,-0.000136311,0.000135677,-1.004666964,0.315840791,neg,ns,0.900638876,Lrp4,Lrp4_Exon,2,91485750,91485799,91485798,91485799,50,+,TCAGGTCTTGACAAGTTCCTGCTTTTTGCCCGAAGGATGGACATCCGTCG,"Exon (Lrp4-201/Lrp4, exon 17 of 38)",2,91457511,91513779,56269,1,Lrp4-201,28239,Lrp4-201;Lrp4-202,Lrp4;Lrp4,0;9494,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,7,228357,ENSMUSG00000027253,conserved gene and region,2,91485740,91485897,158,*,158,11,0.588607595,0.803885291,0.069620253,0.000000471,CpGisland,TRUE,NA,NRS
25228,cg26618728,0.000000788,0.0000108,0.07294756,0.941894891,gain,ns,-0.0000458,0.0000184,-2.495831883,0.01308564,neg,ns,-0.009617841,0.005379352,-1.787918272,0.074765814,neg,ns,1.126296934,-0.000072,0.000184995,-0.389399806,0.69724778,neg,ns,0.225804571,Hmgn2,Hmgn2_fiveUTR,4,133967931,133967980,133967979,133967980,50,+,TTTATAGCGCTGGGAGCCCCGGACCGGTTAGAACCGGATTTCACCTCCCG,Promoter (<=1kb),4,133964738,133968001,3264,2,Hmgn2-203,21,Dhdds-209;Dhdds-201;Dhdds-207;Dhdds-208;Dhdds-210;Dhdds-204;Dhdds-206;Dhdds-203;Dhdds-202;Dhdds-205;Hmgn2-203;Hmgn2-204;Hmgn2-212;Hmgn2-201;Hmgn2-202;Hmgn2-211;Hmgn2-210;Hmgn2-206;Hmgn2-205;Hmgn2-207;Hmgn2-208;Hmgn2-213;Hmgn2-209,Dhdds;Dhdds;Dhdds;Dhdds;Dhdds;Dhdds;Dhdds;Dhdds;Dhdds;Dhdds;Hmgn2;Hmgn2;Hmgn2;Hmgn2;Hmgn2;Hmgn2;Hmgn2;Hmgn2;Hmgn2;Hmgn2;Hmgn2;Hmgn2;Hmgn2,0;0;0;0;0;0;26219;32413;32413;32938;0;-490;0;0;0;0;-656;-680;-688;0;0;0;-70,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,4,15331,ENSMUSG00000003038,mapped to different genes,4,133967280,133968016,737,*,737,106,0.736770692,1.062855433,0.143826323,2.03E-99,CpGisland,TRUE,U1,Pr-A
15618,cg14915305,-0.0000262,0.0000122,-2.154059782,0.032005949,loss,ns,0.0000516,0.0000207,2.495702128,0.013090331,pos,ns,0.013329595,0.006054841,2.20147715,0.028438816,pos,ns,1.546088486,-0.000507524,0.000208225,-2.437376762,0.015356245,neg,ns,0.822227225,Gm4936,Gm4936_Intergenic_downstream,13,82297235,82297284,82297283,82297284,50,+,GGATTAGCCATCTGGTTTGTTGAGGGTTGAAAATCTGTTTAACACCAACG,Distal Intergenic,13,82378785,82379643,859,2,Gm4936-201,82359,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,3,238756,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21719,cg08587692,0.00000942,0.00000592,1.589835222,0.112891229,gain,ns,0.0000251,0.0000101,2.495481131,0.013098323,pos,ns,0.005445318,0.002948399,1.846872955,0.065718435,pos,ns,1.182312787,-0.000145732,0.000101395,-1.437266841,0.151650748,neg,ns,0.076889258,Slitrk1,Slitrk1_Exon,14,108913063,108913112,108913063,108913064,50,+,CGAGTGAGGGAATTGCCATGCAGAAATAAATGGTAAAACTGGGAAGTCGG,"Exon (Slitrk1-201/Slitrk1, exon 1 of 1)",14,108908800,108914158,5359,2,Slitrk1-201,1046,Slitrk1-201,Slitrk1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,17,76965,ENSMUSG00000075478,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
12667,cg25414661,0.00000373,0.00000219,1.706092527,0.088992407,gain,ns,-0.00000928,0.00000372,-2.495397474,0.01310135,neg,ns,0.000173736,0.001088971,0.159541458,0.873346195,pos,ns,0.058813568,-0.0000517,0.0000374,-1.38134577,0.168167492,neg,ns,0.949707943,Mdga2,Mdga2_threeUTR,12,66470674,66470723,66470674,66470675,50,+,CGCAAGCAAACTCCGATAAGCCTGTGTAACATGTAAGCCCAGGTTTACCA,3' UTR,12,66466060,67222549,756490,2,Mdga2-201,751826,Mdga2-201;Mdga2-211;Mdga2-203;Mdga2-210;Mdga2-206;Mdga2-202;Mdga2-212,Mdga2;Mdga2;Mdga2;Mdga2;Mdga2;Mdga2;Mdga2,0;0;0;90260;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,3,320772,ENSMUSG00000034912,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2968,cg17715941,0.0000482,0.0000198,2.426593292,0.015811258,gain,ns,0.0000841,0.0000337,2.495104965,0.013111937,pos,ns,0.021580906,0.009878631,2.184604978,0.029666541,pos,ns,1.527733083,-0.000134446,0.000339725,-0.395748389,0.692562874,neg,ns,0.548249137,Lrmda,Lrmda_Intron,14,22196643,22196692,22196643,22196644,50,-,CGTTCAACCTGGCAACCCAACCAAATAGCTATTTAAGTTGTAAAAATGAA,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,176931,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206,Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10355,cg12396207,-0.00000472,0.00000323,-1.460581408,0.145143096,loss,ns,0.0000137,0.00000549,2.49509538,0.013112284,pos,ns,0.003067793,0.0016079,1.907950014,0.057321385,pos,ns,1.241683324,-0.000098,0.0000553,-1.772145588,0.077352569,neg,ns,0.946498099,Prpf40a,Prpf40a_threeUTR,2,53177353,53177402,53177353,53177354,50,+,CGGTAAGGCAGGCTGCATGGAAGCCTGAGACATATGAGACATCATCATTC,3' UTR,2,53134704,53191225,56522,2,Prpf40a-201,13823,Prpf40a-201;Prpf40a-208;Prpf40a-211;Prpf40a-206;Prpf40a-210;Prpf40a-202;Prpf40a-209;Prpf40a-207;Prpf40a-205;Prpf40a-203,Prpf40a;Prpf40a;Prpf40a;Prpf40a;Prpf40a;Prpf40a;Prpf40a;Prpf40a;Prpf40a;Prpf40a,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,2,56194,ENSMUSG00000061136,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9683,cg04557233,-0.0000386,0.0000102,-3.78777943,0.000182553,loss,ns,0.0000432,0.0000173,2.494903559,0.013119232,pos,ns,-0.004091276,0.005068444,-0.807205518,0.420166981,neg,ns,0.37657808,-0.000126569,0.000174303,-0.726139766,0.468300974,neg,ns,0.631991494,Gm7481,Gm7481_Intergenic_upstream,12,49949289,49949338,49949289,49949290,50,-,CGACCTGTCAGAGCCATCACAGTGATTGACTGCCCCGGCAGATGTGCTGC,Distal Intergenic,12,49840757,49841751,995,2,Gm7481-201,-107587,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,27,37,665077,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17248,cg08915345,0.00000572,0.00000476,1.201652668,0.230415322,gain,ns,-0.0000202,0.00000808,-2.494403435,0.01313736,neg,ns,0.000249888,0.002368086,0.105523122,0.91602897,pos,ns,0.038090791,0.0000248,0.0000814,0.304977128,0.760588228,pos,ns,0.869368309,Gm5356,Gm5356_Intergenic_upstream,8,89308618,89308667,89308618,89308619,50,-,CGGATGAGTTCATTTCAATAGTCACTGTGTTTCATCGGATGCAGCTGGTT,Distal Intergenic,8,89186946,89187560,615,2,Gm5356-201,-121107,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,23,23,384862,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1989,cg26198353,-0.00000108,0.00000389,-0.276490406,0.782355676,loss,ns,0.0000165,0.00000661,2.494378074,0.01313828,pos,ns,0.003520927,0.001936419,1.818266707,0.069988349,pos,ns,1.154974252,-0.0000958,0.0000666,-1.439243886,0.151090386,neg,ns,0.928445415,Foxb2,Foxb2_Promoter,19,16880107,16880156,16880107,16880108,50,+,CGATGTGATCATGCGTGCACCAAGGCGAAACAGACCATTTAAATCAATTA,Promoter (6-7kb),19,16872319,16873805,1487,2,Foxb2-201,-6302,NA,NA,NA,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,3,3,14240,ENSMUSG00000056829,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
26292,cg22829187,0.00000768,0.0000035,2.190276947,0.029248798,gain,ns,-0.0000149,0.00000595,-2.493922585,0.013154811,neg,ns,-0.005437121,0.001744468,-3.116778423,0.001999676,neg,ns,2.69904031,0.000140951,0.00006,2.349484505,0.019426594,pos,ns,0.919102777,Ralgapa2,Ralgapa2_Intron,2,146290958,146291007,146291006,146291007,50,-,CCAGACACCATATGCCATGCGAAGGCCTATTACTTTATTCGGTGCCACCG,"Intron (Ralgapa2-202/Ralgapa2, intron 38 of 40)",2,146239879,146512004,272126,2,Ralgapa2-202,220997,Ralgapa2-202;Ralgapa2-211;Ralgapa2-210;Ralgapa2-205;Ralgapa2-208,Ralgapa2;Ralgapa2;Ralgapa2;Ralgapa2;Ralgapa2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,26,241694,ENSMUSG00000037110,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4131,cg15676760,-0.00000393,0.00000482,-0.815747236,0.415271049,loss,ns,0.0000204,0.00000818,2.49389347,0.013155869,pos,ns,0.006543516,0.002397374,2.729451647,0.006706438,pos,ns,2.173508079,-0.000188548,0.0000824,-2.286944701,0.0228728,neg,ns,0.910512565,Appl1,Appl1_Exon,14,26949478,26949527,26949478,26949479,50,+,CGTCTGTCTTCACAGTCCACAGCCATCACTGAACAGTTGTCTATGTCCAT,"Exon (Appl1-201/Appl1, exon 11 of 22)",14,26918988,26971232,52245,2,Appl1-201,21705,Appl1-201;Appl1-202;Appl1-204,Appl1;Appl1;Appl1,0;8984;20973,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,72993,ENSMUSG00000040760,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2866,cg04028233,0.0000403,0.00000323,12.47795909,3.13E-29,gain,yes,-0.0000137,0.00000548,-2.493625598,0.0131656,neg,ns,0.004207909,0.001606704,2.618969114,0.009253126,pos,ns,2.033711538,-0.0000233,0.0000553,-0.422040464,0.673288019,neg,ns,0.08248099,Otx1,Otx1_Exon,11,21996242,21996291,21996290,21996291,50,+,ACAAGACCTGGAACCGCCATGAGGCTTGGTCCTTATAGTCCAGACAGTCG,"Exon (Otx1-201/Otx1, exon 5 of 5)",11,21994764,22001615,6852,2,Otx1-201,5324,Otx1-201;Otx1-203;Otx1-202,Otx1;Otx1;Otx1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,13,18423,ENSMUSG00000005917,conserved gene but different region,11,21996256,21996378,123,*,123,9,0.569105691,0.941326531,0.073170732,0.00000513,CpGisland,TRUE,U13,Hc-P
900,cg25120213,-0.0000551,0.0000148,-3.7213586,0.000235238,loss,ns,0.0000627,0.0000252,2.493520355,0.013169425,pos,ns,0.013821585,0.007372338,1.874790023,0.061761709,pos,ns,1.209280692,-0.000425755,0.000253534,-1.679282086,0.094104628,neg,ns,0.758977667,Grin2a,Grin2a_Intron,16,9584228,9584277,9584228,9584229,50,-,CGTTGTTATTTTTAAGCAATCTATGTGTTTAGATGCCATCAAGCTAATTA,"Intron (Grin2a-206/Grin2a, intron 13 of 13)",16,9567898,9994923,427026,2,Grin2a-206,410646,Grin2a-206;Grin2a-202;Grin2a-201,Grin2a;Grin2a;Grin2a,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,2,14811,ENSMUSG00000059003,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27709,cg17869121,0.0000012,0.00000826,0.145083217,0.884739452,gain,ns,-0.000035,0.000014,-2.49332365,0.013176577,neg,ns,-0.009464836,0.004111447,-2.302069154,0.021993777,neg,ns,1.65770019,-0.0000063,0.000141392,-0.044552716,0.964492517,neg,ns,0.135630571,Zbtb18,Zbtb18_Intron,1,177459801,177459850,177459801,177459802,50,+,CGAAGTACAATTATGCAATGAGCCAAGTTTGGAAGTATTTTACTATGTTT,"Intron (Gm29856-201/Gm29856-201, intron 1 of 2)",1,177445821,177450764,4944,1,Zbtb18-201,13980,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,22,30928,ENSMUSG00000063659,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3911,cg09049858,0.00001,0.00000597,1.67413178,0.095113274,gain,ns,0.0000253,0.0000102,2.491730578,0.013234625,pos,ns,0.006284582,0.002973689,2.113395681,0.035365662,pos,ns,1.451418208,-0.000113846,0.000102265,-1.113241461,0.266467198,neg,ns,0.151437325,Celf4,Celf4_Exon,18,25753440,25753489,25753440,25753441,50,+,CGGGGGATCTGCCCAATGAACAGCTTGATGGCATCGTGGTCCTTCATGGG,Promoter (<=1kb),18,25477632,25753983,276352,2,Celf4-202,494,Celf4-202;Celf4-201;Celf4-203;Celf4-207;Celf4-206;Celf4-209;Celf4-205,Celf4;Celf4;Celf4;Celf4;Celf4;Celf4;Celf4,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,31,59,108013,ENSMUSG00000024268,conserved gene and region,18,25753376,25753608,233,*,233,18,0.592274678,0.882575758,0.077253219,5.03E-12,CpGisland,TRUE,U3,Pr-B
7937,cg24411365,-0.0000107,0.0000107,-0.99510688,0.320460382,loss,ns,0.0000453,0.0000182,2.491707228,0.013235477,pos,ns,0.011314382,0.005330436,2.122599803,0.034579821,pos,ns,1.461177255,0.0000163,0.000183313,0.088973405,0.929160498,pos,ns,0.834315377,Hif1an,Hif1an_Intron,19,44641579,44641628,44641627,44641628,50,+,GGGACATTAATCATTGCCCTGTGCTTTTGGGCGCCTGTGGGATCTCTGCG,"Intron (Gm35460-201/Gm35460-201, intron 5 of 6)",19,44562850,44576274,13425,1,Hif1an-201,78729,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,31,319594,ENSMUSG00000036450,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17300,cg13194797,-0.00000666,0.00000671,-0.991649021,0.322142152,loss,ns,0.0000284,0.0000114,2.491668547,0.01323689,pos,ns,0.000441243,0.00334171,0.132040935,0.895037572,pos,ns,0.048158733,0.000143943,0.000114921,1.252539999,0.211317228,pos,ns,0.52471548,Ankfn1,Ankfn1_Intron,11,89507164,89507213,89507164,89507165,50,-,CGTCAGAGTTTGTGTCACAGTTTTCAGGTTGATTAATTGACCCAGTAACT,"Intron (Ankfn1-208/Ankfn1, intron 7 of 21)",11,89391238,89841266,450029,2,Ankfn1-208,334053,Ankfn1-208;Ankfn1-206;Ankfn1-202;Ankfn1-203,Ankfn1;Ankfn1;Ankfn1;Ankfn1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,15,382543,ENSMUSG00000047773,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21717,cg09799599,0.0000298,0.00000695,4.283289566,0.0000246,gain,ns,0.0000294,0.0000118,2.491514876,0.013242502,pos,ns,0.005899399,0.003460035,1.705011344,0.089194125,pos,ns,1.04966375,-0.0000526,0.00011899,-0.441702723,0.65901229,neg,ns,0.083336326,Slitrk1,Slitrk1_Exon,14,108912887,108912936,108912887,108912888,50,-,CGTCCAGCCCCAGAAAAGTCTGCTTTCGAAAAGACTTGATCTTGTTGTTG,"Exon (Slitrk1-201/Slitrk1, exon 1 of 1)",14,108908800,108914158,5359,2,Slitrk1-201,1222,Slitrk1-201,Slitrk1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,17,76965,ENSMUSG00000075478,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
16721,cg22828746,-0.0000282,0.00000786,-3.586800736,0.000388834,loss,ns,0.0000333,0.0000134,2.491322049,0.013249547,pos,ns,-0.000666544,0.003912971,-0.17034228,0.86485208,neg,ns,0.063058166,-0.0000453,0.000134567,-0.336849542,0.736458253,neg,ns,0.844809201,Adamtsl1,Adamtsl1_Exon,4,86248118,86248167,86248118,86248119,50,+,CGCGCAGCCCTGCAACATTTTTGACTGCCCTAAATGGCTGGCACAGGAGT,"Exon (Adamtsl1-203/Adamtsl1, exon 10 of 28)",4,86053915,86428382,374468,1,Adamtsl1-203,194203,Adamtsl1-203;Adamtsl1-201;Adamtsl1-209;Adamtsl1-207,Adamtsl1;Adamtsl1;Adamtsl1;Adamtsl1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,10,77739,ENSMUSG00000066113,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16913,cg05146200,-0.0000268,0.00000727,-3.690785611,0.000264037,loss,ns,-0.0000308,0.0000124,-2.490207748,0.013290326,neg,ns,0.007941133,0.003618972,2.194306129,0.028955145,pos,ns,1.538274251,-0.000348811,0.000124456,-2.802680807,0.005387113,neg,ns,0.827848927,Ahsa1,Ahsa1_fiveUTR,12,87270330,87270379,87270378,87270379,50,+,CACCCAGATTAGTGTGAGCCTTGCCAAAGATGAGCCTGACACAAATCTCG,5' UTR,12,87266479,87272649,6171,1,Ahsa1-205,3851,Ahsa1-205;Ahsa1-201;Ahsa1-202;Ahsa1-203;Ahsa1-204;Vipas39-202;Vipas39-203;Vipas39-206,Ahsa1;Ahsa1;Ahsa1;Ahsa1;Ahsa1;Vipas39;Vipas39;Vipas39,0;0;3620;0;0;-4074;-4121;-4077,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,1,217737,ENSMUSG00000021037,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25430,cg14035873,-0.00000493,0.0000113,-0.436496936,0.662780073,loss,ns,0.0000478,0.0000192,2.490094937,0.01329446,pos,ns,0.009108154,0.005622207,1.620031831,0.106242209,pos,ns,0.973702909,0.000117287,0.000193347,0.606613592,0.544551358,pos,ns,0.809609706,Gm5904,Gm5904_Intergenic_upstream,7,136490923,136490972,136490923,136490924,50,+,CGCGCTTCTGTCCTAGTAAATGTAGTGGAGTATGAAAAAGGCAATTACAT,Distal Intergenic,7,136657209,136658073,865,1,Gm5904-201,-166237,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,14,17,546009,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1557,cg14244296,0.0000165,0.00000668,2.463220312,0.014312592,gain,ns,-0.0000283,0.0000114,-2.490061473,0.013295687,neg,ns,0.002771263,0.003326409,0.833109583,0.405424333,pos,ns,0.392090189,-0.000177506,0.000114395,-1.551690979,0.121756461,neg,ns,0.875322854,Zfp521,Zfp521_Intron,18,13704410,13704459,13704458,13704459,50,-,GGGGTCCTTTGAGGGCTGATTATAAAGCTGCCCTCCTGTTGCCTGCCTCG,"Intron (Zfp521-201/Zfp521, intron 7 of 7)",18,13687013,13972787,285775,2,Zfp521-201,268328,Zfp521-201;Zfp521-205;Zfp521-204,Zfp521;Zfp521;Zfp521,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,81,225207,ENSMUSG00000024420,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7991,cg17057912,0.000089,0.0000106,8.382829079,1.83E-15,gain,yes,0.0000449,0.000018,2.489379853,0.013320695,pos,ns,0.012286258,0.005284526,2.324949968,0.020720095,pos,ns,1.683608256,0.0000683,0.000181734,0.376063175,0.707127159,pos,ns,0.219972573,Pax2,Pax2_Intergenic_upstream,19,44674822,44674871,44674870,44674871,50,-,AGATGAAATTCTGTGCCGAGCCTGATGCGCGGTAACCTTTGCAGATGGCG,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-81223,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,19,44674652,44674916,265,*,265,31,0.59245283,1.339693412,0.116981132,3.55E-26,CpGisland,TRUE,U13,Hc-P
23664,cg18371461,0.000000127,0.00000312,0.040612743,0.967630769,gain,ns,-0.0000132,0.00000529,-2.488791556,0.013342313,neg,ns,0.001099798,0.001550945,0.709114815,0.478786183,pos,ns,0.319858391,-0.0000428,0.0000533,-0.802324929,0.422979663,neg,ns,0.915285518,Ptpn4,Ptpn4_threeUTR,1,119680056,119680105,119680056,119680057,50,+,CGTTCAACTTGTGTGGTCAACATTACAACCATAGAGGAGCCTTGTTCCCA,3' UTR,1,119652467,119837613,185147,2,Ptpn4-201,157508,Ptpn4-201;Ptpn4-208,Ptpn4;Ptpn4,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,5,19258,ENSMUSG00000026384,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22110,cg22520505,0.00000923,0.00000537,1.718579766,0.086689304,gain,ns,-0.0000227,0.00000912,-2.48854877,0.013351243,neg,ns,-0.007866813,0.002671673,-2.944527246,0.00347911,neg,ns,2.458531794,0.000132828,0.0000919,1.445687321,0.149275099,pos,ns,0.86313232,Eif4g2,Eif4g2_Exon,7,111076314,111076363,111076314,111076315,50,+,CGAGGTGGCATATCCTTCGACTGTCCTTGCAGCTGGGATAAGAGTCCCTG,"Exon (Eif4g2-213/Eif4g2, exon 14 of 22)",7,111067750,111083030,15281,2,Eif4g2-213,6667,Eif4g2-213;Eif4g2-206;Eif4g2-207;Eif4g2-208;Eif4g2-214;Eif4g2-202;Eif4g2-204;Eif4g2-211;Eif4g2-210;Eif4g2-209;Eif4g2-203;Eif4g2-201;Eif4g2-212;Eif4g2-205,Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2,0;0;0;0;-2065;-1615;-929;-105;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,20,22,13690,ENSMUSG00000005610,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13955,cg18921843,-0.000000768,0.00000145,-0.529120625,0.597100439,loss,ns,0.00000614,0.00000247,2.488165745,0.013365343,pos,ns,0.00093103,0.000722879,1.28794779,0.198724705,pos,ns,0.70174814,-0.0000267,0.0000249,-1.073727781,0.283779775,neg,ns,0.958111058,Chn1,Chn1_fiveUTR,2,73679790,73679839,73679838,73679839,50,+,TAGAGAGTAATCAAGCCATCAGTCACCAGATCGTGGATGGACTCAAAGCG,5' UTR,2,73610660,73775346,164687,2,Chn1-203,95507,Chn1-203;Chn1-210;Chn1-209;Chn1-204;Chn1-213;Chn1-207;Chn1-211;Chn1-205,Chn1;Chn1;Chn1;Chn1;Chn1;Chn1;Chn1;Chn1,0;0;0;0;0;0;-165;0,TRUE,FALSE,FALSE,TRUE,TRUE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,4,108699,ENSMUSG00000056486,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7808,cg11902343,-0.00000811,0.00000632,-1.282057637,0.200780379,loss,ns,0.0000267,0.0000107,2.488031033,0.013370305,pos,ns,0.008136026,0.003146967,2.585354637,0.010184253,pos,ns,1.992070813,-0.000310523,0.000108224,-2.869264661,0.004396849,neg,ns,0.870145567,Arhgap15,Arhgap15_threeUTR,2,44394747,44394796,44394747,44394748,50,+,CGCTAACTAGATTTCACACTGGATTTCATTTTACTTGGCATTACAGAAAG,3' UTR,2,43748824,44395953,647130,1,Arhgap15-203,645923,Arhgap15-203,Arhgap15,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,78,76117,ENSMUSG00000049744,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10774,cg03642296,0.000000712,0.00000354,0.200836272,0.840958302,gain,ns,-0.000015,0.00000602,-2.486185033,0.013438468,neg,ns,0.000473171,0.001764238,0.268201376,0.788722694,pos,ns,0.103075663,0.0000574,0.0000607,0.945854328,0.344959545,pos,ns,0.877125634,Vti1a,Vti1a_Exon,19,55380968,55381017,55380968,55380969,50,-,CGAAGTACGGAATGAGCTCCTGGGGGATGATGGGAATTCCTCAGAGAACC,Promoter (<=1kb),19,55381014,55446979,65966,1,Vti1a-203,0,Vti1a-206;Vti1a-205;Vti1a-202;Vti1a-201;Vti1a-203,Vti1a;Vti1a;Vti1a;Vti1a;Vti1a,0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,32,53611,ENSMUSG00000024983,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13663,cg13435787,-0.0000246,0.00000769,-3.204004921,0.001496351,loss,ns,0.0000325,0.0000131,2.486062096,0.013443019,pos,ns,0.011730804,0.003825684,3.066328492,0.0023579,pos,ns,2.627474703,-0.000547708,0.000131565,-4.163024914,0.0000407,neg,ns,0.837145098,Tcf12,Tcf12_Exon,9,71895930,71895979,71895930,71895931,50,+,CGTTTTCCCATTGTAGTAATACATCAAAGAATTGCTGCCCATTCCAGGGA,"Exon (Tcf12-217/Tcf12, exon 1 of 12)",9,71842688,72111847,269160,2,Tcf12-202,215868,Tcf12-202;Tcf12-217;Tcf12-201;Tcf12-207;Tcf12-220;Tcf12-221;Tcf12-218;Tcf12-215;Tcf12-216;Tcf12-208;Tcf12-213;Tcf12-210;Tcf12-214;Tcf12-205;Tcf12-203;Tcf12-211;Tcf12-209;Tcf12-204,Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,12,21406,ENSMUSG00000032228,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3170,cg22776920,-0.0000106,0.00000445,-2.376805927,0.018070091,loss,ns,0.0000188,0.00000756,2.485545762,0.013462145,pos,ns,0.006542099,0.002215116,2.953388432,0.003383458,pos,ns,2.470639264,-0.000266254,0.0000762,-3.4951682,0.000542851,neg,ns,0.910463078,Eya4,Eya4_Exon,10,23109996,23110045,23109996,23109997,50,+,CGGCCATCTCCAATCACAACATAAGTTATGTTAGTGCCAAATCTGGACAC,"Exon (Eya4-201/Eya4, exon 18 of 19)",10,23102963,23349903,246941,2,Eya4-202,239858,Eya4-202;Eya4-201;Eya4-208;Eya4-206;Eya4-204,Eya4;Eya4;Eya4;Eya4;Eya4,0;0;0;0;5151,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,6,14051,ENSMUSG00000010461,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23722,cg19530397,0.000154081,0.0000206,7.472587332,8.09E-13,gain,yes,-0.0000871,0.000035,-2.485476764,0.013464703,neg,ns,0.108669822,0.010262533,10.58898598,1.44E-22,pos,yes,21.84255415,-0.002120368,0.000352928,-6.007939289,5.26E-09,neg,yes,0.458512579,Bahcc1,Bahcc1_Promoter,11,120228800,120228849,120228800,120228801,50,+,CGTCAAGAAATTGTTTCTAATTTGCCCTTTGACTAATGGCCCAGGGAACA,Promoter (4-5kb),11,120232947,120292282,59336,1,Bahcc1-203,-4098,Bahcc1-203;Bahcc1-201,Bahcc1;Bahcc1,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,11,268515,ENSMUSG00000039741,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
23210,cg18485153,-0.0000171,0.00000629,-2.714319154,0.007013023,loss,ns,0.0000266,0.0000107,2.485229395,0.013473876,pos,ns,0.000179808,0.003130285,0.05744147,0.954230536,pos,ns,0.02034669,-0.0000182,0.00010765,-0.168607087,0.866215661,neg,ns,0.336091496,Rnf220,Rnf220_Intron,4,117490448,117490497,117490448,117490449,50,-,CGGGCAAGAGACACCACAGGCTTTAGGAGCCAGTGGGCAGCAGCATCAGA,"Intron (Rnf220-201/Rnf220, intron 1 of 14)",4,117271463,117497052,225590,2,Rnf220-201,6555,Rnf220-201;Rnf220-207;Rnf220-204,Rnf220;Rnf220;Rnf220,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
18040,cg09958818,-0.00000267,0.00000283,-0.945233482,0.345275836,loss,ns,0.0000119,0.0000048,2.485146394,0.013476955,pos,ns,0.003980797,0.0014062,2.830890149,0.004945173,pos,ns,2.305818503,-0.000112678,0.0000484,-2.33002921,0.02044628,neg,ns,0.946997223,Pola1,Pola1_Intron,X,93381958,93382007,93382006,93382007,50,-,CTTCAATTAGTTCTAATACAAAACATTGCCACCACTTCATTAATCAGCCG,"Intron (Pola1-201/Pola1, intron 35 of 36)",20,93304767,93632155,327389,2,Pola1-201,250148,Pola1-201,Pola1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,59,62,18968,ENSMUSG00000006678,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12547,cg09238852,0.0000136,0.00000227,5.9891714,5.84E-09,gain,yes,-0.00000958,0.00000386,-2.485024168,0.013481491,neg,ns,0.004191031,0.001129697,3.709872057,0.000245692,pos,ns,3.609609009,-0.000152008,0.0000389,-3.912659334,0.000112232,neg,ns,0.035623968,Kcnab1,Kcnab1_fiveUTR,3,65109766,65109815,65109814,65109815,50,+,GAAGCAATGCAAGTCTCCATAGCCTGCACAGAGCACAATTTGAAGAGTCG,5' UTR,3,64949196,65376880,427685,1,Kcnab1-208,160570,Kcnab1-208;Kcnab1-207;Kcnab1-209;Kcnab1-202;Kcnab1-201,Kcnab1;Kcnab1;Kcnab1;Kcnab1;Kcnab1,0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,2,16497,ENSMUSG00000027827,conserved gene and region,3,65109814,65109914,101,*,101,9,0.594059406,1.02020202,0.089108911,0.000001,CpGisland,TRUE,NA,NRS
16489,cg21345304,0.000000977,0.00000537,0.18181207,0.855849036,gain,ns,0.0000227,0.00000913,2.4848653,0.013487388,pos,ns,0.002209424,0.002674702,0.826044823,0.409413945,pos,ns,0.387837369,-0.000104906,0.000092,-1.140492662,0.254961452,neg,ns,0.93073538,Spr-ps1,Spr-ps1_Intergenic_downstream,6,85165577,85165626,85165625,85165626,50,-,TAGTCTTCCTACAGATGGCCAATTAACATTCATTACTTTTGCCTTGAGCG,Distal Intergenic,6,85155208,85156223,1016,1,Spr-ps1-202,10418,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,665089,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19207,cg10101368,-0.0000139,0.00000822,-1.691424567,0.091760714,loss,ns,0.0000347,0.000014,2.484789742,0.013490194,pos,ns,0.012326479,0.004092729,3.011799488,0.002810805,pos,ns,2.551169271,-0.000298468,0.000140749,-2.120576191,0.034751298,neg,ns,0.302863745,Zc3h14,Zc3h14_Exon,12,98780047,98780096,98780095,98780096,50,+,GAGATCTTGTACAACCAGATAAACCTGCAAGTCCCAAGTTTATAGTGACG,"Exon (Zc3h14-204/Zc3h14, exon 12 of 17)",12,98746964,98787753,40790,1,Zc3h14-203,33083,Zc3h14-203;Zc3h14-210;Zc3h14-202;Zc3h14-204;Zc3h14-208;Zc3h14-213;Zc3h14-206;Zc3h14-201;Zc3h14-209;Zc3h14-211;Zc3h14-205,Zc3h14;Zc3h14;Zc3h14;Zc3h14;Zc3h14;Zc3h14;Zc3h14;Zc3h14;Zc3h14;Zc3h14;Zc3h14,0;0;0;0;0;0;0;0;-3235;-4740;-4856,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,75553,ENSMUSG00000021012,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7490,cg08629536,0.0000669,0.00000675,9.91398322,2.64E-20,gain,yes,-0.0000285,0.0000115,-2.484635162,0.013495935,neg,ns,-0.003736458,0.003358099,-1.112670603,0.266711999,neg,ns,0.573957445,0.000131111,0.000115485,1.13531414,0.257120731,pos,ns,0.839076254,Mrps9,Mrps9_Intron,1,42888634,42888683,42888634,42888635,50,-,CGGGGACCCCTGCTGTTCATTTAAATAGGTATGTCAAATCTGCCTCCAAA,"Intron (Mrps9-201/Mrps9, intron 5 of 10)",1,42851233,42905682,54450,1,Mrps9-201,37401,Mrps9-201;Mrps9-202;Mrps9-203;Mrps9-204;Mrps9-206,Mrps9;Mrps9;Mrps9;Mrps9;Mrps9,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,12,69527,ENSMUSG00000060679,conserved gene and region,1,42888594,42888635,42,*,42,7,0.80952381,1.076923077,0.166666667,0.00000035,CpGisland,TRUE,U10,Tr-S
7042,cg26881112,0.000149765,0.0000119,12.57262771,1.42E-29,gain,yes,-0.0000503,0.0000202,-2.484495405,0.013501128,neg,ns,0.001713687,0.005928721,0.289048365,0.772737566,pos,ns,0.111967974,0.000227049,0.000203888,1.113594349,0.266315947,pos,ns,0.719399554,Tfap2a,Tfap2a_threeUTR,13,40715677,40715726,40715677,40715678,50,+,CGTATCAAATATTTATTTATCTGGGCAACAAAGGACTATGATACATTGAC,3' UTR,13,40715302,40730443,15142,2,Tfap2a-201,14717,Tfap2a-201;Tfap2a-202;Tfap2a-205;Tfap2a-203;Tfap2a-209;Tfap2a-208;Tfap2a-206,Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,57,21418,ENSMUSG00000021359,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
4082,cg03524646,-0.00004,0.00000816,-4.894596039,0.00000159,loss,yes,0.0000345,0.0000139,2.484417566,0.01350402,pos,ns,-0.009832607,0.004063096,-2.419978826,0.016096218,neg,ns,1.793276158,0.000226846,0.00013973,1.623464618,0.10550651,pos,ns,0.787592393,Gm45647,Gm45647_Intron,8,26747980,26748029,26747980,26747981,50,+,CGCTTCAGAATATATTGGATTGGGGTTTGATGGCTATTTCGTGTTTTGCA,"Intron (Gm45646-201/Gm45646-201, intron 2 of 2)",8,26780315,26780509,195,1,Gm45647-201,-32286,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,62,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26331,cg07856952,0.0000199,0.00000548,3.628577491,0.000333191,gain,ns,0.0000231,0.0000093,2.484367682,0.013505875,pos,ns,0.004102748,0.002725338,1.505408719,0.133237237,pos,ns,0.875374384,-0.0000527,0.0000937,-0.5627067,0.574041326,neg,ns,0.751163114,Kiz,Kiz_Intergenic_upstream,2,146823754,146823803,146823802,146823803,50,-,TTACCAGTTTTCCGGAGCCGAGCCATCAGGCAGTCTGACACCGGGGTCCG,Distal Intergenic,2,146855864,146970097,114234,1,Kiz-201,-32110,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,29,228730,ENSMUSG00000074749,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11267,cg17707309,-0.00000655,0.00000296,-2.214357426,0.027531404,loss,ns,0.0000125,0.00000502,2.48429311,0.013508647,pos,ns,0.002388875,0.001472011,1.622864423,0.105634847,pos,ns,0.976192791,-0.0000724,0.0000506,-1.431171528,0.153388377,neg,ns,0.937308499,Gpd2,Gpd2_Intron,2,57284073,57284122,57284121,57284122,50,+,TCTTTCAGAAATAGACACTAATTATTAGATCTTGTTTTTGGTCTCACCCG,"Intron (Gpd2-204/Gpd2, intron 2 of 11)",2,57237635,57367853,130219,1,Gpd2-204,46438,Gpd2-204;Gpd2-207;Gpd2-202;Gpd2-201;Gpd2-205,Gpd2;Gpd2;Gpd2;Gpd2;Gpd2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,3,14571,ENSMUSG00000026827,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8797,cg06470132,0.00000142,0.00000459,0.309661399,0.757026507,gain,ns,0.0000194,0.00000779,2.484226958,0.013511107,pos,ns,0.007073092,0.002282081,3.099404678,0.002116948,pos,ns,2.674289859,-0.000239518,0.0000785,-3.051937363,0.002470411,neg,ns,0.887871133,Oga,Oga_Intron,19,45762090,45762139,45762090,45762091,50,-,CGGCAGACCAATCCTTCCAGCCATCTGATGCGCAACATAAGGTTTCTCAT,"Intron (Oga-201/Oga, intron 11 of 15)",19,45750259,45783551,33293,2,Oga-201,21412,Oga-201;Oga-204;Oga-203;Oga-206,Oga;Oga;Oga;Oga,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,21,76055,ENSMUSG00000025220,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3022,cg06857816,-0.0000036,0.00000159,-2.265713644,0.02415841,loss,ns,0.00000671,0.0000027,2.484059786,0.013517324,pos,ns,0.001929507,0.00079128,2.438462215,0.015311091,pos,ns,1.814993855,-0.000054,0.0000272,-1.98355177,0.048187784,neg,ns,0.962637216,Lrmda,Lrmda_Intron,14,22439278,22439327,22439278,22439279,50,+,CGATTCCATTATTGGATAAATTACCACATTACTGCCTGCGTTTTAGGGCT,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,419566,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206;Lrmda-202,Lrmda;Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18920,cg15091495,0.000264034,0.0000213,12.38723808,6.68E-29,gain,yes,-0.0000899,0.0000362,-2.483928699,0.013522202,neg,ns,-0.025383408,0.010608676,-2.392702712,0.01731979,neg,ns,1.761457368,0.000247111,0.000364831,0.677329567,0.498702031,pos,ns,0.734604768,Antxr2,Antxr2_Intron,5,97935163,97935212,97935211,97935212,50,-,AGACTTCGATCTGTACCTGCTGTCCCCTGTCACTCCCTGGAAACTTGGCG,"Intron (Antxr2-201/Antxr2, intron 16 of 16)",5,97882783,98030962,148180,2,Antxr2-201,95750,Antxr2-201;Antxr2-202,Antxr2;Antxr2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,4,71914,ENSMUSG00000029338,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
20046,cg06232035,0.0000533,0.0000229,2.33196909,0.020342544,gain,ns,-0.0000964,0.0000388,-2.483761418,0.013528428,neg,ns,0.01000732,0.011375233,0.879746361,0.379678184,pos,ns,0.420584357,-0.000197692,0.000391193,-0.505355615,0.61366819,neg,ns,0.440392108,Ubtf,Ubtf_Exon,11,102310980,102311029,102311028,102311029,50,+,GTCCGAGAGCTGAGACCACTGCTTCCCCAGGGAGTCCTTCACCTCCTTCG,"Exon (Ubtf-210/Ubtf, exon 8 of 21)",11,102304560,102319096,14537,2,Ubtf-210,8067,Ubtf-210;Ubtf-213;Ubtf-202;Ubtf-203;Ubtf-204;Ubtf-201;Ubtf-205;Ubtf-206;Ubtf-209;Ubtf-212;Ubtf-211;Ubtf-208;Ubtf-207,Ubtf;Ubtf;Ubtf;Ubtf;Ubtf;Ubtf;Ubtf;Ubtf;Ubtf;Ubtf;Ubtf;Ubtf;Ubtf,0;0;0;0;0;0;0;0;0;-1540;-1072;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,8,21429,ENSMUSG00000020923,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15226,cg18674676,-0.000027,0.00000641,-4.206763886,0.000034,loss,ns,0.000027,0.0000109,2.483558137,0.013535998,pos,ns,-0.001050018,0.003188844,-0.329278461,0.742167581,neg,ns,0.12949802,0.0000914,0.000109664,0.833541634,0.405181105,pos,ns,0.923095033,Filip1,Filip1_Exon,9,79815824,79815873,79815872,79815873,50,-,TTTCCTGCTTTCATACCTTTTGACATAGGAATGCGGGTGGGTGTAGGCCG,"Exon (Filip1-205/Filip1, exon 6 of 7)",9,79805094,79977659,172566,2,Filip1-205,161786,Filip1-205;Filip1-201;Filip1-202;Filip1-203,Filip1;Filip1;Filip1;Filip1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,70598,ENSMUSG00000034898,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
17747,cg27357895,-0.00000482,0.00000123,-3.927027773,0.000106036,loss,ns,0.00000518,0.00000209,2.483492397,0.013538446,pos,ns,0.000448272,0.000611066,0.733589853,0.463753165,pos,ns,0.333713113,-0.0000213,0.000021,-1.014941278,0.310925299,neg,ns,0.971476501,Fto,Fto_Intron,8,91622494,91622543,91622494,91622495,50,+,CGATTTACCTTGCAGCCGAGTGAAAAATGATCAGAATATTAGACTCATCT,"Intron (Fto-201/Fto, intron 8 of 8)",8,91313525,91668439,354915,1,Fto-201,308969,Fto-201;Fto-205,Fto;Fto,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,26,26383,ENSMUSG00000055932,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5158,cg10451735,0.00000467,0.00000608,0.768535741,0.442754042,gain,ns,0.0000256,0.0000103,2.483477831,0.013538989,pos,ns,0.005017632,0.003025191,1.658616586,0.098204478,pos,ns,1.007868708,-0.0000828,0.000104036,-0.795656321,0.426840636,neg,ns,0.892507506,Bach2,Bach2_threeUTR,4,32585665,32585714,32585713,32585714,50,+,CACACATATCTACCTGTATAACCCTCTGTACCTCTCATAACTGGTCAACG,3' UTR,4,32238804,32586104,347301,1,Bach2-202,346861,Bach2-202;Bach2-201;Bach2-207,Bach2;Bach2;Bach2,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,14,12014,ENSMUSG00000040270,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26279,cg09955719,0.0000664,0.00000519,12.80065273,2.09E-30,gain,yes,-0.0000219,0.00000881,-2.483462757,0.013539551,neg,ns,0.000864729,0.002580878,0.335052273,0.737812259,pos,ns,0.132054133,0.000126056,0.0000888,1.420249059,0.156540116,pos,ns,0.084190733,Insm1,Insm1_Exon,2,146223670,146223719,146223670,146223671,50,+,CGCCACCTGCGCCTGCTGCACGCCGCCCAGGTGTTCCCCTGCAAGTACTG,"Exon (Insm1-201/Insm1, exon 1 of 1)",2,146221921,146225020,3100,1,Insm1-201,1749,Insm1-201,Insm1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,53626,ENSMUSG00000068154,conserved gene and region,2,146221662,146223777,2116,*,2116,283,0.75,0.952043905,0.133742911,1.29E-253,CpGisland,TRUE,NA,NRS
20813,cg21193060,0.00000271,0.00000326,0.831076571,0.406570017,gain,ns,0.0000137,0.00000553,2.48328997,0.013545989,pos,ns,0.000495549,0.001621109,0.305685418,0.760049345,pos,ns,0.119158211,-0.0000978,0.0000557,-1.754167476,0.080389896,neg,ns,0.935074564,Kcnd3,Kcnd3_Intron,3,105460941,105460990,105460941,105460942,50,+,CGTTATATTGCTGATGGAGAATTCATGAAGCTTTTTATTTTGTCTTTGAC,"Intron (Kcnd3-202/Kcnd3, intron 2 of 6)",3,105452330,105674002,221673,1,Kcnd3-202,8611,Kcnd3-202;Kcnd3-204;Kcnd3-203;Kcnd3-201,Kcnd3;Kcnd3;Kcnd3;Kcnd3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,9,56543,ENSMUSG00000040896,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24723,cg13551382,0.000155645,0.000022,7.061303137,1.09E-11,gain,yes,-0.000093,0.0000374,-2.48281415,0.013563734,neg,ns,0.100277178,0.010970524,9.140600717,8.38E-18,pos,yes,17.07660993,-0.001854338,0.000377275,-4.915076917,0.00000144,neg,yes,0.562045003,Fus,Fus_Exon,7,127973733,127973782,127973781,127973782,50,+,CTGCATTTTATGTGCCACAGGTATGAAAGGTGACATTGCAAAATACTCCG,"Exon (Fus-213/Fus, exon 6 of 6)",7,127967457,127985701,18245,1,Fus-203,6276,Fus-203;Fus-201;Fus-208;Fus-213;Fus-206;Fus-204;Fus-205;Fus-210;Fus-211;Fus-215;Fus-207;Fus-214;Fus-216,Fus;Fus;Fus;Fus;Fus;Fus;Fus;Fus;Fus;Fus;Fus;Fus;Fus,0;0;6242;0;0;0;0;0;0;-1193;-1902;-3532;-4350,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,233908,ENSMUSG00000030795,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23759,cg00659065,-0.00000123,0.00000139,-0.886092312,0.376254631,loss,ns,-0.00000587,0.00000237,-2.482536955,0.01357408,neg,ns,0.000933171,0.000692945,1.346673966,0.179068982,pos,ns,0.746979636,-0.00000791,0.0000238,-0.331992927,0.740118952,neg,ns,0.026013799,Foxo6,Foxo6_Intron,4,120282542,120282591,120282590,120282591,50,+,CGTCTCATCTCTTTAAATTAGTCTGTCTGCAATTACCGCCTGGCACGGCG,"Intron (Foxo6-201/Foxo6, intron 1 of 1)",4,120267079,120287349,20271,2,Foxo6-201,4758,Foxo6-201,Foxo6,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,14,42,329934,ENSMUSG00000052135,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
5442,cg11250627,-0.0000249,0.0000208,-1.197431226,0.232053325,loss,ns,0.0000878,0.0000354,2.482496014,0.013575609,pos,ns,0.012756422,0.010357036,1.231667291,0.219006875,pos,ns,0.659542252,-0.000108529,0.000356178,-0.304705544,0.760794886,neg,ns,0.682452897,Twist1,Twist1_threeUTR,12,33959733,33959782,33959733,33959734,50,+,CGGTGTCTAAATGCATTCATATTTTTATGATTGTTTTGTAAATATCTTTG,3' UTR,12,33957671,33959829,2159,1,Twist1-201,2062,Twist1-201,Twist1,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,7,22160,ENSMUSG00000035799,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
12715,cg04256838,-0.00000565,0.00000298,-1.896977212,0.058760215,loss,ns,0.0000126,0.00000506,2.482368491,0.013580372,pos,ns,0.003108694,0.001482542,2.096867831,0.036815264,pos,ns,1.433972082,-0.0001133,0.000051,-2.222249262,0.026987915,neg,ns,0.93769331,Gm43516,Gm43516_Intergenic_upstream,3,66938740,66938789,66938740,66938741,50,-,CGGCTGCCAAGTATTTTAATTCAGACAGCTGTGACTGAAGAGTTAATATT,Distal Intergenic,3,66953541,66953862,322,1,Gm43516-201,-14801,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,11,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27875,cg22494342,0.00000652,0.00000579,1.126251861,0.260930031,gain,ns,0.0000244,0.00000984,2.482293479,0.013583174,pos,ns,0.001334921,0.002882979,0.463035297,0.64366395,pos,ns,0.191340814,-0.0000191,0.0000991,-0.192456975,0.847510282,neg,ns,0.802466862,Smyd2,Smyd2_Intergenic_upstream,1,189945299,189945348,189945299,189945300,50,+,CGTGGAAGTGTGTGCGGCTGACCCAAACCTCGCTGACATGTCAGCGTGCA,Distal Intergenic,1,189880492,189922363,41872,2,Smyd2-201,-22936,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,7,226830,ENSMUSG00000026603,conserved gene and region,1,189945264,189945438,175,*,175,14,0.542857143,1.088888889,0.08,1.18E-09,CpGisland,TRUE,U15,NS
12333,cg00324422,-0.00000539,0.00000354,-1.523828177,0.128571105,loss,ns,0.0000149,0.00000601,2.48214828,0.0135886,pos,ns,0.001254531,0.00176161,0.712149813,0.476907624,pos,ns,0.321565735,-0.0000477,0.0000606,-0.787249454,0.431737318,neg,ns,0.91567078,Fign,Fign_Intergenic_downstream,2,63970491,63970540,63970491,63970492,50,+,CGGCTACTGCGGGAGCCTTCAGAAGTTTATCAAAAATGAAGAATTGCCTT,Downstream (<1kb),2,63980447,64097988,117542,2,Fign-202,127448,Fign-203,Fign,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,28,84,60344,ENSMUSG00000075324,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25875,cg08402623,-0.00000642,0.00000228,-2.810191468,0.005266075,loss,ns,0.00000963,0.00000388,2.48207202,0.013591451,pos,ns,0.002345394,0.001136202,2.064239303,0.039826712,pos,ns,1.399825542,-0.000063,0.0000391,-1.611516542,0.108084813,neg,ns,0.94315688,Tasp1,Tasp1_Intron,2,139934796,139934845,139934796,139934797,50,+,CGTTTCCAATTTTCAAACATGAAAGAGACTCCTGTTGAATGAAAGAAGAA,"Intron (Tasp1-201/Tasp1, intron 10 of 13)",2,139833480,140066760,233281,2,Tasp1-201,131915,Tasp1-201;Tasp1-202;Tasp1-203,Tasp1;Tasp1;Tasp1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,75812,ENSMUSG00000039033,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16096,cg16847788,-0.00000599,0.00000453,-1.321052545,0.187458126,loss,ns,-0.0000191,0.0000077,-2.481983797,0.013594749,neg,ns,-0.00402057,0.002256939,-1.781426456,0.075821758,neg,ns,1.120206151,0.000119049,0.0000776,1.533816952,0.126094599,pos,ns,0.868103668,Bnc2,Bnc2_Intron,4,84392843,84392892,84392891,84392892,50,-,ATAAATTGCTTTCTTACATCCACAGTGTAAAGGCCCTTATCATTTACCCG,"Intron (Bnc2-201/Bnc2, intron 5 of 7)",4,84275095,84675034,399940,2,Bnc2-201,282142,Bnc2-201;Bnc2-202;Bnc2-214;Bnc2-215;Bnc2-206;Bnc2-211;Bnc2-205;Bnc2-217;Bnc2-207;Bnc2-212;Bnc2-203;Bnc2-209;Bnc2-221;Bnc2-204,Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,91,242509,ENSMUSG00000028487,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23700,cg11998710,-0.0000189,0.0000131,-1.445721063,0.149265638,loss,ns,0.0000551,0.0000222,2.481965658,0.013595427,pos,ns,-0.0020744,0.006500051,-0.319136015,0.749838311,neg,ns,0.125032374,0.000212552,0.000223536,0.950862819,0.342414757,pos,ns,0.957874391,Mga,Mga_Exon,2,119938543,119938592,119938591,119938592,50,-,GCATTGCATCCAGCCAATAGGCTAGCTGCTTATATCACAGGCAGGTTGCG,"Exon (Mga-208/Mga, exon 2 of 2)",2,119897228,119967749,70522,1,Mga-201,41315,Mga-201;Mga-202;Mga-203;Mga-204;Mga-215;Mga-208;Mga-214;Mga-213;Mga-209;Mga-212,Mga;Mga;Mga;Mga;Mga;Mga;Mga;Mga;Mga;Mga,0;0;0;0;0;0;0;0;0;-3163,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,9,29808,ENSMUSG00000033943,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27788,cg23816072,0.000225066,0.0000118,18.9975898,6.57E-54,gain,yes,-0.0000499,0.0000201,-2.481332549,0.013619118,neg,ns,0.001328438,0.005896419,0.225295777,0.821897631,pos,ns,0.085182271,0.000190037,0.000202777,0.937172727,0.349399254,pos,ns,0.71774014,Gm19058,Gm19058_Promoter,1,187010220,187010269,187010220,187010221,50,-,CGGCAGTTGAAGAAGGCCTGTCATTGGGCTGTCAACCTTTAACCTCCCCC,Promoter (3-4kb),1,187006007,187006604,598,2,Gm19058-201,-3665,Gm19058-201,Gm19058,-3616,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,4,100418181,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1826,cg07867602,-0.00000715,0.000012,-0.596053917,0.551574165,loss,ns,-0.0000505,0.0000204,-2.481088818,0.013628249,neg,ns,-0.006779133,0.00596729,-1.136048874,0.256813596,neg,ns,0.590381987,0.0000491,0.000205215,0.239400942,0.810952904,pos,ns,0.506305586,Foxp2,Foxp2_Intron,6,15412012,15412061,15412012,15412013,50,+,CGTCTGGAAAGATAAGGGCACTCAGCACAGACTAAGTGAACTGTTTTATT,"Intron (Foxp2-207/Foxp2, intron 15 of 18)",6,14901349,15441977,540629,1,Foxp2-207,510663,Foxp2-207;Foxp2-213;Foxp2-205;Foxp2-204;Foxp2-201;Foxp2-206,Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,38,65,114142,ENSMUSG00000029563,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17572,cg02707033,0.0000248,0.0000172,1.438832265,0.151206923,gain,ns,0.0000725,0.0000292,2.480907681,0.013635038,pos,ns,0.024530259,0.008562301,2.864914499,0.004456097,pos,ns,2.35104534,-0.000404208,0.000294457,-1.372724368,0.170830294,neg,ns,0.20092284,Dlg2,Dlg2_fiveUTR,7,91090889,91090938,91090937,91090938,50,+,CAAACTGACAGAGGGAACGGATGCTCTTTAGTAGCACATGCCCAGGATCG,5' UTR,7,90477231,92449247,1972017,1,Dlg2-217,613658,Dlg2-217;Dlg2-204;Dlg2-209;Dlg2-201,Dlg2;Dlg2;Dlg2;Dlg2,0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,21,23859,ENSMUSG00000052572,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27960,cg26278617,-0.0000129,0.00000558,-2.312314825,0.021415216,loss,ns,0.0000235,0.00000949,2.480814429,0.013638534,pos,ns,0.002996756,0.002779182,1.078286761,0.281744115,pos,ns,0.550145147,-0.000105354,0.0000956,-1.10230266,0.271185155,neg,ns,0.862651938,Gm38022,Gm38022_Intergenic_downstream,1,193610472,193610521,193610520,193610521,50,+,TATGACATTCCTAAAATATCTTTATTTAATAATGAAAACTTCATTATCCG,Distal Intergenic,1,193475290,193475692,403,1,Gm38022-201,135182,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,108167843,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12514,cg27348924,0.000000878,0.00000479,0.183269154,0.854706642,gain,ns,-0.0000202,0.00000814,-2.480702571,0.013642729,neg,ns,-0.000378514,0.002383341,-0.15881637,0.873916964,neg,ns,0.05852983,-0.0000973,0.000082,-1.186575966,0.236303476,neg,ns,0.88999124,Hmbox1,Hmbox1_threeUTR,14,64823480,64823529,64823528,64823529,50,-,ACTGTAAGAACACATGTTAAGGACCGAGGAAAGTCTGCTAAGGTGCTACG,3' UTR,14,64811600,64949850,138251,2,Hmbox1-201,126321,Hmbox1-201;Hmbox1-206;Hmbox1-202;Hmbox1-205;Hmbox1-209;Hmbox1-210;Hmbox1-203;Hmbox1-207;Hmbox1-204,Hmbox1;Hmbox1;Hmbox1;Hmbox1;Hmbox1;Hmbox1;Hmbox1;Hmbox1;Hmbox1,0;-1184;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,8,219150,ENSMUSG00000021972,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18170,cg12389652,-0.00000374,0.00000225,-1.659868986,0.097951998,loss,ns,0.00000948,0.00000382,2.480045058,0.01366741,pos,ns,0.003420653,0.001120263,3.053437836,0.002458454,pos,ns,2.609337914,-0.00012178,0.0000385,-3.161002232,0.001727674,neg,ns,0.953446412,Luc7l3,Luc7l3_threeUTR,11,94293026,94293075,94293026,94293027,50,+,CGCTGCACTGTCAAACAGTAACAAAAAGCCCTAATCAAAGTGAGAAACAA,3' UTR,11,94287890,94321958,34069,2,Luc7l3-209,28883,Luc7l3-209;Luc7l3-205;Luc7l3-203;Luc7l3-201;Luc7l3-202;Luc7l3-207;Luc7l3-204;Luc7l3-210;Luc7l3-206;Luc7l3-208,Luc7l3;Luc7l3;Luc7l3;Luc7l3;Luc7l3;Luc7l3;Luc7l3;Luc7l3;Luc7l3;Luc7l3,0;0;0;0;0;0;0;5143;5956;7156,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,7,7,67684,ENSMUSG00000020863,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17644,cg11939159,-0.0000573,0.0000668,-0.858026634,0.391540649,loss,ns,0.000281539,0.000113523,2.4800034,0.013668975,pos,ns,-0.126874964,0.033258528,-3.814809986,0.000164485,neg,ns,3.783872629,0.005706641,0.001143758,4.989377573,0.00000101,pos,yes,0.296611034,Zic1,Zic1_Exon,9,91364137,91364186,91364137,91364138,50,-,CGGATGTGGTTAACCAGTTTGTATTTGGCTTTGAAGGGCTTGCCCTCGCG,"Exon (Zic1-201/Zic1, exon 1 of 3)",9,91358058,91365768,7711,2,Zic1-201,1582,Zic1-201;Zic1-202;Zic1-203;Zic4-208;Zic4-206;Zic4-207;Zic4-211;Zic4-204,Zic1;Zic1;Zic1;Zic4;Zic4;Zic4;Zic4;Zic4,0;0;-1083;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,10,22771,ENSMUSG00000032368,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
18789,cg10065127,-0.0000018,0.00000176,-1.022016007,0.307570212,loss,ns,-0.00000741,0.00000299,-2.479897749,0.013672945,neg,ns,-0.001942908,0.000875738,-2.218595502,0.027238371,neg,ns,1.564818861,0.0000154,0.0000301,0.510383423,0.610146089,pos,ns,0.953355137,Socs7,Socs7_Exon,11,97377644,97377693,97377644,97377645,50,-,CGCTCTAGGCTGGTGAAGCCCCTGAAGTAGTCACCTTAGTAAGGTTAGTG,"Exon (Socs7-202/Socs7, exon 1 of 3)",11,97362435,97398542,36108,1,Socs7-203,15209,Socs7-203;Socs7-201;Socs7-202,Socs7;Socs7;Socs7,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,192157,ENSMUSG00000038485,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17784,cg06225551,0.00000131,0.00000219,0.599882685,0.549022647,gain,ns,-0.00000923,0.00000372,-2.479838917,0.013675156,neg,ns,0.000607995,0.001090453,0.557562096,0.577545826,pos,ns,0.23841355,-0.000127521,0.0000375,-3.400508421,0.000760694,neg,ns,0.955556396,Son,Son_Exon,16,91664950,91664999,91664950,91664951,50,-,CGACAGATGAAACAACCCGCAGCTTCTCATTTGACAGTAACTCGATGCAA,"Exon (Son-204/Son, exon 7 of 7)",16,91647506,91679207,31702,1,Son-203,17444,Son-203;Son-204;Son-202;Son-208;Son-201;Son-205;Son-212;Son-207,Son;Son;Son;Son;Son;Son;Son;Son,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,31,20658,ENSMUSG00000022961,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23266,cg27282785,0.0000801,0.00000919,8.72485269,1.67E-16,gain,yes,-0.0000387,0.0000156,-2.478977151,0.013707581,neg,ns,0.00197352,0.004572078,0.431646047,0.666298729,pos,ns,0.176331015,-0.0000396,0.000157233,-0.252122263,0.801113635,neg,ns,0.803657772,Eri3,Eri3_Exon,4,117637347,117637396,117637395,117637396,50,+,GAGCTTGATAAATGGGGAGCACTCCAGACTGACTCGCGCCTTCCTCCGCG,"Exon (Eri3-203/Eri3, exon 1 of 3)",4,117550365,117674297,123933,1,Eri3-201,86982,Eri3-201;Eri3-206;Eri3-203,Eri3;Eri3;Eri3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,97,140546,ENSMUSG00000033423,conserved gene but different region,4,117637294,117637471,178,*,178,15,0.634831461,0.841740227,0.084269663,1.21E-10,CpGisland,TRUE,U11,Tr-P
18378,cg02110722,-0.00000327,0.00000268,-1.220847623,0.223071473,loss,ns,0.0000113,0.00000455,2.47855868,0.013723351,pos,ns,0.003995058,0.00133415,2.994458384,0.00297077,pos,ns,2.527131011,-0.000097,0.0000459,-2.11462166,0.035260113,neg,ns,0.954773579,Mysm1,Mysm1_Exon,4,94961702,94961751,94961750,94961751,50,+,CCACATCCAAAATTGATTGCTCCTATCAATTCGAGGTATGTATGAATCCG,"Exon (Mysm1-201/Mysm1, exon 9 of 20)",4,94942040,94979100,37061,2,Mysm1-201,17349,Mysm1-201;Mysm1-208;Mysm1-206;Mysm1-209;Mysm1-205,Mysm1;Mysm1;Mysm1;Mysm1;Mysm1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,320713,ENSMUSG00000062627,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10737,cg04814124,-0.0000025,0.0000033,-0.756176005,0.450117915,loss,ns,-0.0000139,0.00000561,-2.478495357,0.013725738,neg,ns,-0.004104414,0.001643237,-2.497761101,0.013016076,neg,ns,1.885519913,0.0000696,0.0000565,1.232197066,0.218809237,pos,ns,0.930437059,Zfhx2,Zfhx2_Exon,14,55072782,55072831,55072830,55072831,50,+,AGTTGGAAGTTGGCCTTGAGCTGGGTGCCATAGCAGCAAAGCTTGCAGCG,"Exon (Zfhx2os-202/Zfhx2os-202, exon 4 of 5)",14,55060262,55092324,32063,2,Zfhx2-201,19493,Zfhx2-201;Zfhx2-202;Zfhx2-203,Zfhx2;Zfhx2;Zfhx2,0;-548;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,8,239102,ENSMUSG00000040721,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23354,cg27467665,-0.0000296,0.00000728,-4.061717538,0.0000618,loss,ns,-0.0000307,0.0000124,-2.478054737,0.013742363,neg,ns,-0.006719766,0.003625133,-1.853660474,0.064737609,neg,ns,1.188843346,-0.000199603,0.000124668,-1.601078001,0.110378163,neg,ns,0.821911083,Smg1,Smg1_threeUTR,7,118135402,118135451,118135450,118135451,50,+,CGAGATTTCCTAGGTTTCCTCAGAGTAAGCCCCCAGTTGCATCACCACCG,3' UTR,7,118131308,118243637,112330,2,Smg1-201,108186,Smg1-201;Smg1-204;Smg1-207,Smg1;Smg1;Smg1,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,7,9,233789,ENSMUSG00000030655,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8496,cg23855931,0.0000214,0.00000312,6.835683106,4.34E-11,gain,yes,-0.0000131,0.00000531,-2.477930373,0.013747058,neg,ns,-0.001558134,0.0015546,-1.002273176,0.316993365,neg,ns,0.498949828,0.0000743,0.0000535,1.390273452,0.165443218,pos,ns,0.075108564,Lbx1,Lbx1_Intergenic_downstream,19,45229382,45229431,45229430,45229431,50,-,ATTACCACGTTCTGGTCCCTCAGACTGGAGTATTACTTATCGGAGCTGCG,Distal Intergenic,19,45232684,45235812,3129,2,Lbx1-201,6430,Lbx1-201,Lbx1,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,30,50,16814,ENSMUSG00000025216,mapped to different genes,19,45229389,45229613,225,*,225,22,0.635555556,0.968688845,0.097777778,7.42E-17,CpGisland,TRUE,U3,Pr-B
14297,cg16330204,-0.0000106,0.00000378,-2.798079873,0.0054625,loss,ns,0.0000159,0.00000643,2.477039371,0.01378074,pos,ns,0.001607718,0.001882736,0.853926493,0.393805089,pos,ns,0.404718676,-0.0000341,0.0000647,-0.525972928,0.599283076,neg,ns,0.921072754,Dkc1,Dkc1_Exon,X,75098779,75098828,75098827,75098828,50,+,CTTGACAAGCCCTCTAACCCCTCTTCCCATGAGGTGGTAGCCTGGATTCG,"Exon (Dkc1-201/Dkc1, exon 5 of 15)",20,75095854,75109777,13924,1,Dkc1-201,2925,Dkc1-201;Dkc1-202;Dkc1-204;Dkc1-205;Dkc1-203;Dkc1-207;Dkc1-208;Dkc1-209;Dkc1-210;Dkc1-212;Dkc1-211,Dkc1;Dkc1;Dkc1;Dkc1;Dkc1;Dkc1;Dkc1;Dkc1;Dkc1;Dkc1;Dkc1,0;0;0;0;0;0;0;-1090;-1225;-1431;-2120,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,245474,ENSMUSG00000031403,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18708,cg03206542,-0.00000171,0.00000203,-0.841828816,0.400532724,loss,ns,-0.00000855,0.00000345,-2.476976076,0.013783136,neg,ns,0.00052067,0.001011693,0.514652165,0.607162832,pos,ns,0.216694822,-0.0000271,0.0000348,-0.777882034,0.437231827,neg,ns,0.937505879,Rnf115,Rnf115_threeUTR,3,96784996,96785045,96784996,96784997,50,+,CGGGATGCTGCACTCCAACCCTGGGGACTATGCCTGGGGTCAGACAGGGC,3' UTR,3,96727664,96791152,63489,1,Rnf115-201,57332,Rnf115-201;Rnf115-202;Rnf115-203,Rnf115;Rnf115;Rnf115,0;0;57157,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,2,67845,ENSMUSG00000028098,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5832,cg05202136,-0.0000614,0.00000704,-8.71816488,1.75E-16,loss,yes,-0.0000296,0.000012,-2.47687798,0.013786849,neg,ns,0.001728087,0.0035026,0.493372482,0.622098753,pos,ns,0.206140669,-0.000249411,0.000120454,-2.070589688,0.039224669,neg,ns,0.865053073,Msantd1,Msantd1_fiveUTR,5,34917436,34917485,34917484,34917485,50,-,TAGCTTATGCAGTTGCTCTGTTGCTATGGAAACGTGACATCAAAATGACG,5' UTR,5,34908012,34917816,9805,1,Msantd1-202,9424,Htt-201;Msantd1-202;Msantd1-204;Msantd1-201;Msantd1-203,Htt;Msantd1;Msantd1;Msantd1;Msantd1,0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,4,403174,ENSMUSG00000051246,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10484,cg15511156,0.0000396,0.00000633,6.256048588,1.31E-09,gain,yes,0.0000266,0.0000108,2.476703273,0.013793465,pos,ns,0.004206029,0.003150739,1.334933936,0.182877494,pos,ns,0.737839737,0.000025,0.000108354,0.230806361,0.817617489,pos,ns,0.80847009,Npas3,Npas3_Intron,12,53837541,53837590,53837589,53837590,50,-,CCGAGTGCTTGACAGAGATAATCTCAGCAATCCCACGGGTGACCTTATCG,"Intron (Npas3-204/Npas3, intron 4 of 10)",12,53248157,54069532,821376,1,Npas3-204,589384,Npas3-204;Npas3-201;Npas3-203,Npas3;Npas3;Npas3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,83,103,27386,ENSMUSG00000021010,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4902,cg16485709,0.0000371,0.00000629,5.89893909,9.57E-09,gain,yes,-0.0000264,0.0000107,-2.475721106,0.013830708,neg,ns,-0.004111406,0.003129547,-1.313738122,0.189905744,neg,ns,0.721461899,-0.0000626,0.000107625,-0.581490734,0.561332333,neg,ns,0.765217404,Zfp513,Zfp513_Exon,5,31200641,31200690,31200641,31200642,50,-,CGGCCCCTCACCTGTCGGCCCCCCACACAGCTGGCAGGCTGGGCCTGGCC,"Exon (Zfp513-202/Zfp513, exon 3 of 4)",5,31198981,31202303,3323,2,Zfp513-202,1613,Ppm1g-205;Ppm1g-201;Ppm1g-206;Ppm1g-203;Ppm1g-204;Snx17-201;Snx17-202;Snx17-204;Snx17-210;Snx17-208;Snx17-207;Snx17-211;Snx17-209;Snx17-206;Snx17-203;Zfp513-202;Zfp513-201;Zfp513-205;Zfp513-207;Zfp513-203;Zfp513-204;Zfp513-208;Zfp513-206,Ppm1g;Ppm1g;Ppm1g;Ppm1g;Ppm1g;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Zfp513;Zfp513;Zfp513;Zfp513;Zfp513;Zfp513;Zfp513;Zfp513,0;0;4393;0;0;0;0;0;0;0;0;5798;0;0;0;0;0;0;-355;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,15,15,101023,ENSMUSG00000043059,conserved gene and region,5,31200414,31200657,244,*,244,21,0.68442623,0.738115817,0.086065574,6.37E-15,CpGisland,TRUE,U12,Tr-I
16553,cg09415540,-0.0000015,0.00000217,-0.692327768,0.489249773,loss,ns,0.00000911,0.00000368,2.47557103,0.013836407,pos,ns,0.003479836,0.001077886,3.228390199,0.001378267,pos,ns,2.860666774,-0.0000822,0.0000371,-2.217612699,0.027306083,neg,ns,0.95265224,Camkmt,Camkmt_Exon,17,85431478,85431527,85431478,85431479,50,+,CGATGGGATAATGAGACAGATGTCTCTCAACTGGAAGGACATTTTGACAT,"Exon (Camkmt-201/Camkmt, exon 8 of 11)",17,85090552,85458588,368037,1,Camkmt-201,340926,Camkmt-201,Camkmt,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,44,73582,ENSMUSG00000071037,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2300,cg07523464,-0.000000534,0.000000867,-0.615807333,0.53847355,loss,ns,0.00000364,0.00000147,2.475557228,0.013836931,pos,ns,0.000483461,0.000431323,1.120878421,0.263207174,pos,ns,0.579702278,-0.0000145,0.0000148,-0.977628801,0.32902024,neg,ns,0.97958801,Rorb,Rorb_fiveUTR,19,18988057,18988106,18988057,18988058,50,+,CGTAGTGGATCCCAGAGGACTTATCGCCACAAATTTTGCATGGTATCACT,5' UTR,19,18930605,19001117,70513,2,Rorb-201,13011,Rorb-201;Rorb-203;Rorb-202;Rorb-205;Rorb-204,Rorb;Rorb;Rorb;Rorb;Rorb,0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,10,225998,ENSMUSG00000036192,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22209,cg13982601,-0.00000224,0.00000404,-0.554677308,0.579515361,loss,ns,0.000017,0.00000686,2.475419821,0.013842151,pos,ns,-0.002125171,0.002010412,-1.057082484,0.291296996,neg,ns,0.535663994,0.0000826,0.0000691,1.195297705,0.232884326,pos,ns,0.953688633,Klc1,Klc1_Exon,12,111795545,111795594,111795593,111795594,50,+,CAGGATGGCACTGGATCTTTAAAACGCAGTGGTTCCTTTAGCAAACTCCG,"Exon (Klc1-211/Klc1, exon 14 of 16)",12,111758849,111803240,44392,1,Klc1-211,36696,Klc1-211;Klc1-201;Klc1-202;Klc1-204;Klc1-203;Klc1-206;Klc1-205;Klc1-210;Klc1-208,Klc1;Klc1;Klc1;Klc1;Klc1;Klc1;Klc1;Klc1;Klc1,0;0;36589;0;23226;0;6223;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,16593,ENSMUSG00000021288,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9672,cg14243654,0.00000603,0.00000315,1.912638658,0.056715618,gain,ns,-0.0000133,0.00000536,-2.475353823,0.013844659,neg,ns,-0.002067992,0.001569951,-1.317233143,0.188733273,neg,ns,0.724151529,-0.0000164,0.000054,-0.304103643,0.761252957,neg,ns,0.862425569,Mapk9,Mapk9_Exon,11,49873852,49873901,49873852,49873853,50,-,CGGGTGCATCATGGCAGAAATGGTCCTCCATAAAGTCCTGTTCCCGGGAA,"Exon (Mapk9-205/Mapk9, exon 7 of 12)",11,49846751,49886421,39671,1,Mapk9-205,27101,Mapk9-205;Mapk9-209;Mapk9-210;Mapk9-201;Mapk9-206;Mapk9-207;Mapk9-203;Mapk9-208;Mapk9-202;Mapk9-204,Mapk9;Mapk9;Mapk9;Mapk9;Mapk9;Mapk9;Mapk9;Mapk9;Mapk9;Mapk9,0;0;0;0;0;26959;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,26420,ENSMUSG00000020366,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26468,cg04188260,-0.00000305,0.00000825,-0.369830039,0.711761653,loss,ns,-0.0000347,0.000014,-2.4753292,0.013845594,neg,ns,-0.008672638,0.004108268,-2.11102075,0.0355709,neg,ns,1.448905148,0.0000623,0.000141283,0.441214936,0.659364967,pos,ns,0.712333458,Gm572,Gm572_Intergenic_downstream,4,148677306,148677355,148677354,148677355,50,+,GACTCCATTTAATTTTTTAAAAGCTCAGATGATTTCCCTTCTCGAATCCG,Distal Intergenic,4,148643317,148671572,28256,1,Gm572-201,33989,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,11,230909,ENSMUSG00000070577,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14315,cg02056891,-0.000226155,0.0000191,-11.85487736,5.48E-27,loss,yes,0.0000802,0.0000324,2.474992846,0.013858382,pos,ns,-0.021164903,0.009494808,-2.229102746,0.026523508,neg,ns,1.576369029,-0.000072,0.000326526,-0.220391988,0.825710957,neg,ns,0.511103279,Smg6,Smg6_Intron,11,75152823,75152872,75152871,75152872,50,+,AGGCTTCTGCAGCTTTTTACTCATACAAACAAAAATAAACCTCACTACCG,"Intron (Smg6-201/Smg6, intron 15 of 18)",11,74925823,75164448,238626,1,Smg6-201,227000,Smg6-201;Smg6-202,Smg6;Smg6,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,34,103677,ENSMUSG00000038290,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16571,cg25719133,0.0000208,0.00000453,4.5921379,0.00000639,gain,ns,-0.0000191,0.0000077,-2.474879663,0.013862687,neg,ns,0.000979308,0.002255239,0.43423686,0.664418524,pos,ns,0.177558268,-0.000067,0.0000776,-0.86362151,0.388463535,neg,ns,0.1348301,Rpl31-ps16,Rpl31-ps16_Promoter,17,85488998,85489047,85489046,85489047,50,+,TGAGCATCCTTCTCAAAGACCAGTGTTAAAAAACACAAGTGCTCTTTTCG,Promoter (9-10kb),17,85498633,85499008,376,1,Rpl31-ps16-201,-9586,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,13,668850,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
6198,cg20615601,-0.0000521,0.00000896,-5.816813281,1.49E-08,loss,yes,-0.0000377,0.0000152,-2.474602335,0.013873241,neg,ns,-0.010853688,0.004458002,-2.434653017,0.015470067,neg,ns,1.810507796,-0.0000483,0.00015331,-0.315015496,0.752961823,neg,ns,0.885090043,Pura,Pura_threeUTR,18,36288450,36288499,36288498,36288499,50,-,TAAAGAACTGAGTGTTTATTTCCCTAATTAACCAAGAACTTTTGTACACG,3' UTR,18,36281097,36292535,11439,1,Pura-201,7353,Pura-201,Pura,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,19,19290,ENSMUSG00000043991,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15538,cg23624952,-0.0000182,0.00000967,-1.884013053,0.060498873,loss,ns,0.0000406,0.0000164,2.474597778,0.013873414,pos,ns,0.014975544,0.004810477,3.113109834,0.002023928,pos,ns,2.693804897,-0.000430531,0.000165432,-2.602466905,0.009700252,neg,ns,0.830101122,Gm50297,Gm50297_Intergenic_downstream,18,81672473,81672522,81672473,81672474,50,+,CGCTTCCCCAGAAAGTGGACAGAATAAAAGTAGACAGTTTCTATTAACAA,Distal Intergenic,18,82261062,82261262,201,2,Gm50297-201,588740,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,17,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
731,cg01036016,0.00000458,0.00000511,0.895510256,0.371209197,gain,ns,-0.0000215,0.00000869,-2.474486863,0.013877637,neg,ns,0.013238007,0.002544667,5.202255201,0.000000359,pos,ns,6.445374398,-0.000398726,0.0000875,-4.556300133,0.0000075,neg,ns,0.899948265,Nipbl,Nipbl_Exon,15,8343528,8343577,8343576,8343577,50,-,TTTGGCTTTTCATTAACTGTGCTACGCTTGCGTTTGTTCATTTTCACACG,"Exon (Nipbl-201/Nipbl, exon 11 of 47)",15,8290617,8444463,153847,2,Nipbl-201,100886,Nipbl-201,Nipbl,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,19,36,71175,ENSMUSG00000022141,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10951,cg24796250,-0.00000391,0.00000115,-3.405309701,0.000747921,loss,ns,0.00000482,0.00000195,2.474483411,0.013877769,pos,ns,0.001412756,0.000571148,2.473536409,0.013913872,pos,ns,1.856551991,-0.0000358,0.0000196,-1.825078508,0.06895137,neg,ns,0.96596124,Tcf7l2,Tcf7l2_Intron,19,55912065,55912114,55912113,55912114,50,+,TTGACAAAAGGCTACAAATTAAGCTCTGTTAATTTAATGTTTTCTCACCG,"Intron (Tcf7l2-213/Tcf7l2, intron 6 of 13)",19,55741820,55933229,191410,1,Tcf7l2-213,170245,Tcf7l2-213;Tcf7l2-201;Tcf7l2-208;Tcf7l2-211;Tcf7l2-212;Tcf7l2-206;Tcf7l2-204;Tcf7l2-205;Tcf7l2-222;Tcf7l2-215;Tcf7l2-214;Tcf7l2-207;Tcf7l2-202;Tcf7l2-209;Tcf7l2-210;Tcf7l2-217;Tcf7l2-220;Tcf7l2-218;Tcf7l2-203;Tcf7l2-216;Tcf7l2-219;Tcf7l2-221,Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,55,88,21416,ENSMUSG00000024985,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18050,cg24987599,-0.0000104,0.00000579,-1.788566771,0.074660997,loss,ns,0.0000244,0.00000984,2.474123671,0.013891474,pos,ns,0.005530838,0.00288361,1.918025637,0.056026245,pos,ns,1.251608485,-0.000208769,0.0000992,-2.105220203,0.036076471,neg,ns,0.896169062,Pola1,Pola1_Intron,X,93409536,93409585,93409584,93409585,50,-,TGTTCCAGAAATTTAGTGTTTAAAGACCGATTAGGCGATAAATGGACTCG,"Intron (Pola1-201/Pola1, intron 35 of 36)",20,93304767,93632155,327389,2,Pola1-201,222570,Pola1-201,Pola1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,59,62,18968,ENSMUSG00000006678,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7780,cg03599829,0.0000792,0.0000108,7.366382269,1.60E-12,gain,yes,-0.0000452,0.0000183,-2.474054441,0.013894113,neg,ns,0.006245392,0.005351847,1.166960245,0.244123296,pos,ns,0.612390775,-0.00026797,0.00018405,-1.455965496,0.146414147,neg,ns,0.355343262,Clic5,Clic5_Intergenic_downstream,17,44300870,44300919,44300870,44300871,50,-,CGTTGTTTAGATTTCTGGTGGGAACTCCTCACACATGCTCTGGGGCTCCA,Distal Intergenic,17,44237106,44251719,14614,1,Clic5-202,63813,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,224796,ENSMUSG00000023959,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27091,cg16269798,0.000126019,0.000016,7.854664898,6.62E-14,gain,yes,-0.0000674,0.0000273,-2.473951822,0.013898025,neg,ns,0.045147423,0.007985201,5.653886738,3.56E-08,pos,ns,7.448411696,-0.001297386,0.00027461,-4.724461345,0.0000035,neg,ns,0.487099012,Srsf11,Srsf11_threeUTR,3,158023225,158023274,158023273,158023274,50,-,CTGCCAAGATTTCATCACCTGTACTCGATTTTTAAGTCATGAACCAAACG,3' UTR,3,158010473,158036639,26167,2,Srsf11-204,13365,Srsf11-204;Srsf11-213;Srsf11-202;Srsf11-207;Srsf11-201;Srsf11-217;Srsf11-218;Srsf11-206;Srsf11-209;Srsf11-210;Srsf11-212;Srsf11-203;Srsf11-208;Srsf11-215,Srsf11;Srsf11;Srsf11;Srsf11;Srsf11;Srsf11;Srsf11;Srsf11;Srsf11;Srsf11;Srsf11;Srsf11;Srsf11;Srsf11,0;0;0;-85;0;-1221;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,8,69207,ENSMUSG00000055436,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7663,cg00013189,0.0000357,0.00000554,6.439627121,4.56E-10,gain,yes,-0.0000233,0.00000941,-2.473910992,0.013899582,neg,ns,0.005056477,0.002756286,1.834525292,0.067534284,pos,ns,1.170475699,-0.000111125,0.0000948,-1.172347697,0.241957619,neg,ns,0.049235525,Nkx2-3,Nkx2-3_Intergenic_downstream,19,43616493,43616542,43616541,43616542,50,+,CCGATTGTGAGCGTGCCAAGGCGGGTGAATGGGGAGGCCTCAGAGCGCCG,Distal Intergenic,19,43612325,43615892,3568,1,Nkx2-3-201,4168,Nkx2-3-201,Nkx2-3,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,6,18089,ENSMUSG00000044220,conserved gene and region,19,43616270,43616905,636,*,636,57,0.682389937,0.781074268,0.089622642,1.32E-40,CpGisland,TRUE,U13,Hc-P
790,cg07576552,-0.00000754,0.00000331,-2.277541155,0.023434658,loss,ns,0.0000139,0.00000562,2.473265013,0.013924234,pos,ns,0.002858909,0.001647085,1.735738326,0.083603764,pos,ns,1.077774167,-0.000107052,0.0000566,-1.889945525,0.059698007,neg,ns,0.05209453,Stx5a,Stx5a_Exon,19,8742288,8742337,8742288,8742289,50,-,CGCTACGGGTCTAAGAACACGGATCAGGGTGTCTACCTGGGTCTCTCAAA,Promoter (<=1kb),19,8741413,8755586,14174,1,Stx5a-218,875,1700092M07Rik-201;1700092M07Rik-202;Stx5a-218;Stx5a-213;Stx5a-203;Stx5a-219;Stx5a-205;Stx5a-201;Stx5a-209;Stx5a-212;Stx5a-202;Stx5a-206;Stx5a-208;Stx5a-211;Stx5a-207;Wdr74-202;Wdr74-201;Wdr74-203;Wdr74-204;Wdr74-207;Wdr74-205;Wdr74-206;Wdr74-208,1700092M07Rik;1700092M07Rik;Stx5a;Stx5a;Stx5a;Stx5a;Stx5a;Stx5a;Stx5a;Stx5a;Stx5a;Stx5a;Stx5a;Stx5a;Stx5a;Wdr74;Wdr74;Wdr74;Wdr74;Wdr74;Wdr74;Wdr74;Wdr74,1570;1526;0;0;0;0;0;0;0;0;0;0;0;0;-523;0;0;0;6407;0;0;0;2620,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,56389,ENSMUSG00000010110,conserved gene and region,19,8742266,8742308,43,*,43,7,0.558139535,2.104895105,0.162790698,0.000000419,CpGisland,TRUE,U1,Pr-A
8104,cg12035531,-0.00000151,0.00000161,-0.939986561,0.347956304,loss,ns,0.00000676,0.00000273,2.472695667,0.013945994,pos,ns,0.002923554,0.000800918,3.650252789,0.000307361,pos,ns,3.512350688,-0.0000722,0.0000275,-2.623085874,0.009144503,neg,ns,0.960973731,Ebf1,Ebf1_Intron,11,44745891,44745940,44745891,44745892,50,+,CGCCTTAAAGAGCCATTATTGCCTATCAGGGAGATAATGTGTGTGTGTAT,"Intron (Ebf1-203/Ebf1, intron 6 of 15)",11,44617317,45004995,387679,1,Ebf1-203,128574,Ebf1-203;Ebf1-202;Ebf1-201,Ebf1;Ebf1;Ebf1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,80,13591,ENSMUSG00000057098,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12817,cg13377646,-0.00000323,0.00000299,-1.078692206,0.28156356,loss,ns,-0.0000126,0.00000508,-2.472363795,0.013958692,neg,ns,0.002293757,0.001489088,1.540376668,0.124488672,pos,ns,0.904870165,-0.000104908,0.0000512,-2.048598004,0.041343263,neg,ns,0.922387985,Lysmd4,Lysmd4_threeUTR,7,67231336,67231385,67231384,67231385,50,+,AAAGGTTCATCTCAAGGATGGCAACAAAGTCCAGCTTGTGCCGCCAAACG,3' UTR,7,67222544,67307330,84787,1,Lysmd4-206,8792,Lysmd4-206;Lysmd4-205;Lysmd4-201;Lysmd4-204;Lysmd4-209;Lysmd4-202;Lysmd4-207;Mef2a-208;Mef2a-204;Mef2a-206;Mef2a-211;Mef2a-203;Mef2a-202;Mef2a-201,Lysmd4;Lysmd4;Lysmd4;Lysmd4;Lysmd4;Lysmd4;Lysmd4;Mef2a;Mef2a;Mef2a;Mef2a;Mef2a;Mef2a;Mef2a,0;8757;8728;8726;8720;8707;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,3,75099,ENSMUSG00000043831,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6220,cg05058571,0.000118115,0.0000192,6.147804761,2.42E-09,gain,yes,-0.0000807,0.0000326,-2.47235628,0.01395898,neg,ns,0.022100589,0.009562268,2.311228638,0.021475914,pos,ns,1.668048351,-0.000777674,0.000328846,-2.364861147,0.018652541,neg,ns,0.383664868,Tenm2,Tenm2_Intron,11,36411137,36411186,36411185,36411186,50,-,TTGCCTCTTGTACCAGGCAATTTACTGCAAGTCAATCAAGGTCGAAGCCG,"Intron (Tenm2-202/Tenm2, intron 4 of 30)",11,36006656,37235882,1229227,2,Tenm2-202,824696,Tenm2-202;Tenm2-208;Tenm2-201;Tenm2-204;Tenm2-205;Tenm2-206;Tenm2-203,Tenm2;Tenm2;Tenm2;Tenm2;Tenm2;Tenm2;Tenm2,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,47,84,23964,ENSMUSG00000049336,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21170,cg07189297,-0.00000314,0.00000381,-0.824459421,0.410312468,loss,ns,0.000016,0.00000647,2.472321485,0.013960312,pos,ns,0.005317206,0.001894175,2.80713573,0.005315019,pos,ns,2.274495216,-0.000141062,0.0000651,-2.165506198,0.031111302,neg,ns,0.931429138,Zfp644,Zfp644_Exon,5,106618349,106618398,106618349,106618350,50,-,CGTTTACAATATGTCGTTGTAAGTGCTTAATCCAGTCTTCCTGAACAGAC,"Exon (Zfp644-204/Zfp644, exon 6 of 6)",5,106616739,106696830,80092,2,Zfp644-204,78432,Zfp644-204;Zfp644-201;Zfp644-205;Zfp644-203;Zfp644-202;Zfp644-208,Zfp644;Zfp644;Zfp644;Zfp644;Zfp644;Zfp644,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,10,52397,ENSMUSG00000049606,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26560,cg03564272,-0.0000261,0.00000898,-2.907826599,0.003902181,loss,ns,0.0000377,0.0000153,2.47199369,0.013972865,pos,ns,-0.00179453,0.004467828,-0.40165603,0.688213943,neg,ns,0.162276533,-0.0000699,0.000153648,-0.454992635,0.649433012,neg,ns,0.674765896,Casz1,Casz1_Intron,4,148920882,148920931,148920882,148920883,50,+,CGTGCATGGGTAATGAAAGTTTATGCCCTTGTTAGAAGGACAGGCGGCCA,"Intron (Casz1-201/Casz1, intron 4 of 15)",4,148804429,148945129,140701,1,Casz1-201,116453,Casz1-201;Casz1-202;Casz1-206,Casz1;Casz1;Casz1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,94,124,69743,ENSMUSG00000028977,mapped to different genes,4,148920806,148920883,78,*,78,8,0.551282051,1.356521739,0.102564103,0.00000181,CpGisland,TRUE,U11,Tr-P
25148,cg26311542,0.0000442,0.0000195,2.268331968,0.023996532,gain,ns,-0.0000818,0.0000331,-2.471945364,0.013974717,neg,ns,-0.001531521,0.009693683,-0.157991657,0.874566236,neg,ns,0.058207293,0.000510678,0.000333365,1.531889329,0.126569583,pos,ns,0.647153473,Ahdc1,Ahdc1_Intergenic_downstream,4,133086131,133086180,133086131,133086132,50,-,CGGTTGCCTAGCAACCCCACAGCTGTCTGTTGACCTAGAAGAAGCTGCGC,Distal Intergenic,4,133066249,133072063,5815,1,Ahdc1-208,19931,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,49,230793,ENSMUSG00000037692,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24668,cg18336804,0.0000117,0.00000296,3.942979628,0.0000995,gain,ns,-0.0000124,0.00000504,-2.471879098,0.013977256,neg,ns,0.001595789,0.001475139,1.081788946,0.280187108,pos,ns,0.552551851,-0.0000843,0.0000507,-1.661270716,0.097670032,neg,ns,0.857330634,Gm42715,Gm42715_Exon,7,127534572,127534621,127534572,127534573,50,+,CGAGTTAAGGTGGATGTTGAGAAGCAGATGCCCAAAAAGTACGAGCATGT,"Exon (Srcap-204/Srcap, exon 17 of 21)",7,127519584,127567054,47471,1,Gm42715-201,14988,Gm42715-201;Srcap-204;Srcap-201;Srcap-208;Srcap-207;Srcap-206;Srcap-214;Srcap-213,Gm42715;Srcap;Srcap;Srcap;Srcap;Srcap;Srcap;Srcap,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,7,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21476,cg23593476,-0.000025,0.00000435,-5.750794887,2.13E-08,loss,yes,0.0000183,0.00000739,2.471576314,0.013988863,pos,ns,-0.001271214,0.002165184,-0.58711605,0.557553117,neg,ns,0.253713752,0.000121874,0.0000745,1.636762815,0.102694775,pos,ns,0.933235165,Bcl11b,Bcl11b_Intron,12,107928526,107928575,107928526,107928527,50,-,CGGGGGATTTTGGGCCGACGCAGATGGCAAATAAAGTACTCAGCCTAAGG,"Intron (Bcl11b-201/Bcl11b, intron 3 of 3)",12,107910403,108003602,93200,2,Bcl11b-201,75027,Bcl11b-201;Bcl11b-202;Bcl11b-203,Bcl11b;Bcl11b;Bcl11b,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,39,58208,ENSMUSG00000048251,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15132,cg01429507,-0.0000327,0.00000705,-4.645317144,0.00000503,loss,ns,0.0000296,0.000012,2.471374499,0.013996605,pos,ns,0.005035611,0.003507183,1.435799323,0.152067719,pos,ns,0.817962968,-0.000218079,0.000120612,-1.808107446,0.071558787,neg,ns,0.643513304,Gm48470,Gm48470_Intergenic_downstream,13,79345979,79346028,79346027,79346028,50,+,GTATCTCAAAGGAGCCCCATATGGTGCTCTTTGTCCGTGTCATTACCTCG,Distal Intergenic,13,79441143,79441407,265,2,Gm48470-201,95379,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,20,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12707,cg17003414,-0.000000343,0.00000195,-0.17558064,0.860738045,loss,ns,0.00000819,0.00000331,2.471186211,0.014003831,pos,ns,0.005233711,0.000971053,5.3897265,0.00000014,pos,ns,6.853941358,-0.000126501,0.0000334,-3.788074178,0.000182346,neg,ns,0.072108468,Reep3,Reep3_Intron,10,66920575,66920624,66920623,66920624,50,-,TGTTTTATGTAAAAAGTCTTCCCTGAGGAAAGCCTCGGCCTCCAGCTGCG,"Intron (Gm26576-201/Gm26576-201, intron 1 of 2)",10,67028926,67034632,5707,2,Reep3-203,114057,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,28193,ENSMUSG00000019873,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17827,cg24347190,-0.0000275,0.00000743,-3.708021419,0.000247417,loss,ns,0.0000312,0.0000126,2.471092331,0.014007435,pos,ns,0.008346386,0.003695674,2.258420288,0.024614348,pos,ns,1.608811661,-0.000228875,0.000127094,-1.800837012,0.072700386,neg,ns,0.864959391,Irx3,Irx3_Intergenic_upstream,8,91948546,91948595,91948594,91948595,50,-,AACGGCACTAAATGAGGCATTTAATTCAACAAATCCAAAGTTCTGATCCG,Distal Intergenic,8,91798525,91802067,3543,2,Irx3-202,-146528,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,15,36,16373,ENSMUSG00000031734,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24395,cg21789698,0.0000174,0.00000388,4.49516943,0.00000983,gain,ns,-0.0000163,0.00000658,-2.471063185,0.014008554,neg,ns,-0.001048542,0.001929166,-0.543521008,0.587161764,neg,ns,0.231242234,0.0000769,0.0000663,1.159403834,0.247183855,pos,ns,0.904397964,Iffo1,Iffo1_threeUTR,6,125153444,125153493,125153444,125153445,50,+,CGGAGTCCCTGTTCAAAACCCGGGAGAAGGAGTATCAGGAGACCATTGAC,3' UTR,6,125145241,125161782,16542,1,Iffo1-202,8203,Iffo1-202;Iffo1-204;Iffo1-206;Iffo1-201;Iffo1-205;Iffo1-207;Iffo1-203;Iffo1-208;Iffo1-210;Iffo1-209,Iffo1;Iffo1;Iffo1;Iffo1;Iffo1;Iffo1;Iffo1;Iffo1;Iffo1;Iffo1,0;0;0;0;0;0;0;4437;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,3,320678,ENSMUSG00000038271,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4595,cg10317946,-0.00000683,0.00000346,-1.975477413,0.049100677,loss,ns,0.0000145,0.00000588,2.470900065,0.014014819,pos,ns,0.005038806,0.001721871,2.926354774,0.003683054,pos,ns,2.433791956,-0.000116294,0.0000592,-1.963927983,0.050431782,neg,ns,0.914374059,Ahcyl2,Ahcyl2_Exon,6,29896329,29896378,29896377,29896378,50,-,GAATGTGGTAACCAGAGAGCACTTGGACCGTATGAAGAATAGCTGCATCG,Promoter (<=1kb),6,29896329,29909055,12727,1,Ahcyl2-212,0,Ahcyl2-202;Ahcyl2-204;Ahcyl2-205;Ahcyl2-201;Ahcyl2-203;Ahcyl2-215;Ahcyl2-221;Ahcyl2-212,Ahcyl2;Ahcyl2;Ahcyl2;Ahcyl2;Ahcyl2;Ahcyl2;Ahcyl2;Ahcyl2,0;0;0;0;0;0;2577;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,Exon,2,2,74340,ENSMUSG00000029772,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7784,cg10516422,0.0000135,0.00000519,2.608535571,0.00953362,gain,ns,0.0000218,0.00000882,2.470745802,0.014020746,pos,ns,0.005277157,0.002585191,2.041302794,0.042067232,pos,ns,1.376056065,0.0000511,0.0000889,0.574700141,0.565910933,pos,ns,0.909546727,Arhgap15,Arhgap15_Intron,2,44305394,44305443,44305442,44305443,50,-,GCTCCTGCTGTAAAAATTCACAAACCTGGCATTCATACAGGCATCTGTCG,"Intron (Arhgap15-203/Arhgap15, intron 12 of 14)",2,43748824,44395953,647130,1,Arhgap15-203,556570,Arhgap15-203;Arhgap15-202;Arhgap15-201,Arhgap15;Arhgap15;Arhgap15,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,72,78,76117,ENSMUSG00000049744,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2614,cg27538829,-0.0000026,0.00000299,-0.867099386,0.386558224,loss,ns,-0.0000126,0.00000508,-2.470583671,0.014026977,neg,ns,-0.004570768,0.001489542,-3.068573315,0.00234078,neg,ns,2.630639317,0.000063,0.0000512,1.23065639,0.219384359,pos,ns,0.93929739,Zswim8,Zswim8_Exon,14,20719575,20719624,20719575,20719576,50,+,CGCCTTCGAGATTGGGCTTTATGCCCTTGGCCTGCACAACTTTGTTTCTC,"Exon (Zswim8-201/Zswim8, exon 19 of 26)",14,20707552,20723619,16068,1,Zswim8-201,12023,Ndst2-202;Ndst2-205;Ndst2-201;Ndst2-204;Ndst2-207;Zswim8-201;Zswim8-208;Zswim8-204;Zswim8-211;Zswim8-203;Zswim8-213;Zswim8-209;Zswim8-207;Zswim8-202;Zswim8-210;Zswim8-214,Ndst2;Ndst2;Ndst2;Ndst2;Ndst2;Zswim8;Zswim8;Zswim8;Zswim8;Zswim8;Zswim8;Zswim8;Zswim8;Zswim8;Zswim8;Zswim8,0;0;0;0;0;0;0;0;0;0;0;0;974;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,13,14,268721,ENSMUSG00000021819,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6071,cg00296110,0.0000438,0.0000102,4.274131064,0.0000256,gain,ns,0.000043,0.0000174,2.470578814,0.014027164,pos,ns,0.007033827,0.005097847,1.379764227,0.168653608,pos,ns,0.773004364,-0.000241436,0.000175315,-1.377156331,0.169457503,neg,ns,0.565830607,Psd2,Psd2_Intergenic_upstream,18,35933702,35933751,35933702,35933703,50,+,CGCCACGCCGGGCCCTTTGGGGGAATACTAATTCCACTACAAGATAAATC,Distal Intergenic,18,35964830,36014712,49883,1,Psd2-201,-31079,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,24,29,74002,ENSMUSG00000024347,mapped to different genes,18,35933670,35933711,42,*,42,10,0.761904762,1.647058824,0.238095238,3.06E-12,CpGisland,TRUE,U13,Hc-P
17897,cg15755123,-0.00000417,0.00000215,-1.940519857,0.053222974,loss,ns,0.00000901,0.00000365,2.470282145,0.014038573,pos,ns,0.001082682,0.001068385,1.013382679,0.311667691,pos,ns,0.506308216,-0.0000407,0.0000367,-1.108786337,0.26838182,neg,ns,0.945940095,Dlg2,Dlg2_Intron,7,92417117,92417166,92417117,92417118,50,-,CGTCACTACAGCTCTCTGTGCTTTTACAAACTAGTTGTTTTGTCAGCATG,"Intron (Dlg2-217/Dlg2, intron 21 of 27)",7,90477231,92449247,1972017,1,Dlg2-217,1939886,Dlg2-217;Dlg2-204;Dlg2-201;Dlg2-220;Dlg2-218;Dlg2-219;Dlg2-203;Dlg2-202;Dlg2-212;Dlg2-208;Dlg2-207;Dlg2-214,Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,21,23859,ENSMUSG00000052572,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11340,cg26989456,0.0000344,0.00000573,5.995830303,5.63E-09,gain,yes,-0.0000241,0.00000974,-2.470223533,0.014040828,neg,ns,-0.000678307,0.002853336,-0.237724309,0.812251968,neg,ns,0.090309228,0.0000884,0.0000981,0.901166306,0.36819948,pos,ns,0.873150082,Gm8107,Gm8107_Intergenic_downstream,X,57712089,57712138,57712137,57712138,50,-,ACAATGGCTGCTGATCGGCCTTTTATGGTTTATTGGAAACTGGTGGTCCG,Distal Intergenic,20,57736547,57738555,2009,2,Gm8107-201,26466,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,4,666441,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4721,cg18250414,0.000106566,0.0000133,8.023531872,2.14E-14,gain,yes,-0.0000557,0.0000226,-2.469985863,0.014049976,neg,ns,-0.005286106,0.006610416,-0.799663058,0.424518356,neg,ns,0.372103527,0.000313556,0.000227332,1.379289119,0.168799847,pos,ns,0.567437185,Mecom,Mecom_Intron,3,30286614,30286663,30286614,30286615,50,+,CGTGACAATATTTGCATTGCCTGAATGATTTTCACCTCTGCCACAAGGTG,"Intron (Mecom-212/Mecom, intron 1 of 15)",3,29951299,30509733,558435,2,Mecom-212,223070,Mecom-212;Mecom-213;Mecom-207;Mecom-208;Mecom-211;Mecom-209,Mecom;Mecom;Mecom;Mecom;Mecom;Mecom,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,80,14013,ENSMUSG00000027684,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17136,cg25446773,-0.00000953,0.00000557,-1.708615549,0.088523119,loss,ns,-0.0000234,0.00000947,-2.469962655,0.014050869,neg,ns,0.001909997,0.00277461,0.688383744,0.491725967,pos,ns,0.308276857,-0.000193963,0.0000954,-2.03275975,0.042928711,neg,ns,0.906428646,Brd1,Brd1_Exon,15,88700918,88700967,88700966,88700967,50,-,TGGCTGGGTTTCAGTGTTCTTGGCAGACTTTGGGGGGCTTACACTTTTCG,"Exon (Brd1-203/Brd1, exon 8 of 13)",15,88687034,88734233,47200,2,Brd1-203,33266,Brd1-203;Brd1-202;Brd1-205;Brd1-201,Brd1;Brd1;Brd1;Brd1,0;0;-54;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,223770,ENSMUSG00000022387,conserved gene and region,15,88700966,88701098,133,*,133,13,0.631578947,0.985185185,0.097744361,4.22E-10,CpGisland,TRUE,U10,Tr-S
26409,cg21258436,0.00006,0.00000496,12.10579923,6.92E-28,gain,yes,-0.0000208,0.00000842,-2.469555932,0.014066536,neg,ns,0.007343586,0.002468071,2.975435856,0.003155814,pos,ns,2.500888657,-0.000108362,0.0000849,-1.276694741,0.202665563,neg,ns,0.129529031,Cdx2,Cdx2_Intron,5,147304887,147304936,147304935,147304936,50,-,GGACTTGTCAGAATTCATTATTGACTGCGAAAGTCACCACCCTCTTTCCG,"Intron (Cdx2-201/Cdx2, intron 1 of 2)",5,147300805,147307270,6466,2,Cdx2-201,2334,Cdx2-201,Cdx2,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,7,12591,ENSMUSG00000029646,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
2796,cg05571800,-0.0000134,0.0000135,-0.991162755,0.322379116,loss,ns,0.0000566,0.0000229,2.469219438,0.014079509,pos,ns,-0.005931043,0.006717634,-0.8829065,0.377970933,neg,ns,0.422541598,0.000230848,0.000231019,0.999259229,0.318448474,pos,ns,0.744472856,Ccdc178,Ccdc178_threeUTR,18,21811244,21811293,21811292,21811293,50,-,GATGAGGCAAAGCCAATTGCAATCAGTCACCCAGAGCTGAAATTAGATCG,3' UTR,18,21810893,22171442,360550,2,Ccdc178-204,360149,Ccdc178-204;Ccdc178-201;Ccdc178-202,Ccdc178;Ccdc178;Ccdc178,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,21,70950,ENSMUSG00000024306,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
927,cg08212236,0.0000128,0.00000374,3.424214407,0.000699548,gain,ns,-0.0000157,0.00000635,-2.469005943,0.014087746,neg,ns,0.000774122,0.001859147,0.41638558,0.677416017,pos,ns,0.169144539,-0.0000236,0.0000639,-0.369747177,0.711823336,neg,ns,0.802247782,Chrm3,Chrm3_Exon,13,9877378,9877427,9877378,9877379,50,-,CGGGGTTCACGGTGCTGTTGATGTAGCACAGCCAGTAGCCCAGATTCCAA,"Exon (Chrm3-202/Chrm3, exon 5 of 5)",13,9875486,10360844,485359,2,Chrm3-202,483417,Chrm3-202;Chrm3-201,Chrm3;Chrm3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,12671,ENSMUSG00000046159,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11448,cg12041965,-0.00000677,0.00000427,-1.587274133,0.113469991,loss,ns,0.0000179,0.00000725,2.468988357,0.014088425,pos,ns,-0.002163759,0.00212332,-1.019045519,0.308975979,neg,ns,0.510075283,-0.000000392,0.000073,-0.005370345,0.995718559,neg,ns,0.934266533,Gm14647,Gm14647_Intergenic_downstream,X,58312683,58312732,58312731,58312732,50,+,GAGGAAAAGATTCCATATGTTCTCCAATACCTAGGCACAACTGGGTGCCG,Distal Intergenic,20,58225079,58225758,680,1,Gm14647-201,87604,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,3,100418408,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21517,cg15385778,-0.00000223,0.00000249,-0.896185915,0.370848858,loss,ns,0.0000105,0.00000424,2.468737264,0.014098118,pos,ns,0.002285784,0.00124082,1.842155871,0.066407299,pos,ns,1.177784186,-0.0000453,0.0000427,-1.060604328,0.289695372,neg,ns,0.951359117,Mtf2,Mtf2_Exon,5,108080826,108080875,108080874,108080875,50,-,GACTCTACAGGGGCAGGTAATTCACTGGTCCACAAGCGGTCTCCTTTACG,"Exon (Mtf2-206/Mtf2, exon 3 of 17)",5,108065674,108107163,41490,1,Mtf2-206,15152,Mtf2-206;Mtf2-203;Mtf2-209;Mtf2-205;Mtf2-214;Mtf2-207;Mtf2-210;Mtf2-201;Mtf2-213;Mtf2-202;Mtf2-212;Mtf2-211;Mtf2-215,Mtf2;Mtf2;Mtf2;Mtf2;Mtf2;Mtf2;Mtf2;Mtf2;Mtf2;Mtf2;Mtf2;Mtf2;Mtf2,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,7,17765,ENSMUSG00000029267,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13617,cg08729294,0.0000679,0.00000886,7.665901634,2.30E-13,gain,yes,0.0000372,0.0000151,2.468573148,0.014104457,pos,ns,0.016765509,0.004410044,3.801664466,0.00017305,pos,ns,3.761828334,-0.0000908,0.000151661,-0.598762073,0.549768825,neg,ns,0.393302952,Dlx1,Dlx1_Intron,2,71536064,71536113,71536112,71536113,50,-,CCAAGAGGGTCAGCATCATTTCACTGTATTCTCTTCTTGATTACAAGCCG,"Intron (Dlx1as-204/Dlx1as-204, intron 1 of 1)",2,71530780,71532689,1910,1,Dlx1-206,5333,Dlx1-201;Dlx1-204;Dlx1-203;Dlx1-206,Dlx1;Dlx1;Dlx1;Dlx1,0;0;0;5284,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,36,13390,ENSMUSG00000041911,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
7220,cg12157827,-0.00000966,0.00000812,-1.188671095,0.235478893,loss,ns,-0.0000341,0.0000138,-2.468317788,0.014114325,neg,ns,-0.006089441,0.00404371,-1.505904596,0.133109915,neg,ns,0.875789592,0.0000503,0.000139063,0.362036946,0.717571085,pos,ns,0.795026987,Cntfr,Cntfr_Intron,4,41666683,41666732,41666731,41666732,50,-,TTGTTTTCCTCCTAATTGGCTTGTTTTTCCATGTCCAGCCCACCAAACCG,"Intron (Cntfr-203/Cntfr, intron 4 of 9)",4,41657498,41695442,37945,2,Cntfr-203,28710,Cntfr-203;Cntfr-204;Cntfr-206;Cntfr-201;Cntfr-202;Cntfr-205,Cntfr;Cntfr;Cntfr;Cntfr;Cntfr;Cntfr,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,12,12804,ENSMUSG00000028444,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2840,cg25700754,-0.00000557,0.00000192,-2.90565754,0.003928597,loss,ns,0.00000803,0.00000325,2.468230249,0.014117709,pos,ns,0.001502043,0.000953258,1.57569375,0.116116331,pos,ns,0.935106697,-0.0000531,0.0000328,-1.619423429,0.106373024,neg,ns,0.954798744,Zfp184,Zfp184_threeUTR,13,21959683,21959732,21959683,21959684,50,-,CGGAGTTCATCTCTTGCTAAGCATGAAAGAATTCATACTGGAGAGAAACC,3' UTR,13,21945094,21960485,15392,1,Zfp184-205,14589,Gm11282-201;Zfp184-205;Zfp184-206;Zfp184-202;Zfp184-201;Zfp184-204,Gm11282;Zfp184;Zfp184;Zfp184;Zfp184;Zfp184,-1560;0;0;0;0;10289,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,193452,ENSMUSG00000006720,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U14,Hc-H
2964,cg09655511,-0.00000485,0.00000271,-1.792183508,0.074078633,loss,ns,0.0000114,0.0000046,2.468152836,0.014120702,pos,ns,0.001532605,0.001348014,1.136935125,0.256443465,pos,ns,0.591008363,0.0000934,0.0000464,2.015468621,0.044718269,pos,ns,0.9361319,Lrmda,Lrmda_Intron,14,22192306,22192355,22192354,22192355,50,-,AGTAGGTCCATCTTGGTGGCATCTGATGTTGATTGGCTTTGTCCTGCGCG,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,172594,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206,Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,14,22192352,22192427,76,*,76,8,0.565789474,1.375565611,0.105263158,0.00000148,CpGisland,TRUE,U11,Tr-P
12468,cg16691122,-0.00000379,0.00000684,-0.554035813,0.57995376,loss,ns,0.0000287,0.0000116,2.468123973,0.014121818,pos,ns,0.003000736,0.003403089,0.881768418,0.378585228,pos,ns,0.421836335,-0.000149614,0.000117032,-1.27840362,0.20206345,neg,ns,0.709101283,Megf11,Megf11_Intron,9,64403607,64403656,64403607,64403608,50,-,CGACTGCTTCATGTAAAGGATTAATAAACTGGAGATTTATGGGGCAGCAG,"Intron (Megf11-202/Megf11, intron 1 of 22)",9,64385626,64700975,315350,1,Megf11-202,17981,Megf11-202;Megf11-203;Megf11-210;Megf11-207;Megf11-201,Megf11;Megf11;Megf11;Megf11;Megf11,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,7,214058,ENSMUSG00000036466,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22613,cg05751969,0.00000132,0.0000105,0.125324297,0.900348051,gain,ns,0.0000441,0.0000179,2.467914017,0.01412994,pos,ns,0.00909057,0.005231911,1.737523697,0.083287908,pos,ns,1.079418046,-0.000267529,0.000179925,-1.486893051,0.138059424,neg,ns,0.15050137,Msi1,Msi1_Exon,5,115430817,115430866,115430865,115430866,50,-,GTCACTTTCATGGACCAGGCGGGGGTGGATAAAGTGCTGGCGCAATCGCG,"Exon (Msi1-208/Msi1, exon 4 of 15)",5,115429599,115455698,26100,1,Msi1-208,1218,Msi1-208;Msi1-209;Msi1-201;Msi1-203;Msi1-206;Msi1-205;Msi1-207;Msi1-204;Msi1-202,Msi1;Msi1;Msi1;Msi1;Msi1;Msi1;Msi1;Msi1;Msi1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,14,17690,ENSMUSG00000054256,conserved gene and region,5,115429256,115430967,1712,*,1712,200,0.754672897,0.820764577,0.11682243,8.17E-166,CpGisland,TRUE,U3,Pr-B
25416,cg22539455,-0.00000869,0.00000292,-2.979564425,0.003114778,loss,ns,-0.0000122,0.00000495,-2.467844773,0.01413262,neg,ns,-0.003562044,0.001451487,-2.454064721,0.014674907,neg,ns,1.833424657,-0.0000487,0.0000499,-0.975493224,0.330076252,neg,ns,0.906064525,Hnrnpr,Hnrnpr_Exon,4,136332451,136332500,136332451,136332452,50,-,CGGGGGTTCTGCTTCCTTGAATATGAGGATCACAAGTCAGCAGCACAAGC,"Exon (Hnrnpr-204/Hnrnpr, exon 7 of 10)",4,136310942,136340681,29740,1,Hnrnpr-204,21509,Hnrnpr-204;Hnrnpr-202;Hnrnpr-207;Hnrnpr-201;Hnrnpr-206;Hnrnpr-205;Hnrnpr-208,Hnrnpr;Hnrnpr;Hnrnpr;Hnrnpr;Hnrnpr;Hnrnpr;Hnrnpr,0;0;0;0;0;20860;-3573,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,7,74326,ENSMUSG00000066037,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1177,cg00071267,0.000017,0.00000859,1.98037748,0.048544948,gain,ns,0.000036,0.0000146,2.46772177,0.01413738,pos,ns,0.010572867,0.004275549,2.472867481,0.013939424,pos,ns,1.855755156,-0.000336283,0.000147036,-2.287079711,0.02286482,neg,ns,0.877277634,Gm14512,Gm14512_Intergenic_downstream,X,11998145,11998194,11998145,11998146,50,-,CGAACACAAGATGGCAGCCTTAAATAAATGCAACCCTGCGCAGCTTTTAA,Distal Intergenic,20,11984468,11984697,230,1,Gm14512-201,13726,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,22,22,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10070,cg11982879,0.0000523,0.0000124,4.230524346,0.0000307,gain,ns,-0.0000518,0.000021,-2.467631101,0.014140891,neg,ns,0.060188807,0.006155083,9.77871505,7.37E-20,pos,yes,19.13269387,-0.000927451,0.000211673,-4.381533261,0.0000161,neg,ns,0.570601689,Dhx15,Dhx15_Exon,5,52157552,52157601,52157552,52157553,50,-,CGTGGGGCGAACAAAACACTGTGGGACTAAACAAGGTTGGTATGGGCCCA,"Exon (Dhx15-201/Dhx15, exon 11 of 14)",5,52150203,52190514,40312,2,Dhx15-201,32913,Dhx15-201;Dhx15-207;Dhx15-206;Dhx15-205;Dhx15-204,Dhx15;Dhx15;Dhx15;Dhx15;Dhx15,0;0;0;0;4032,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,14,13204,ENSMUSG00000029169,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15520,cg25337298,0.00000619,0.00000389,1.589783674,0.112902855,gain,ns,0.0000163,0.00000661,2.467483865,0.014146593,pos,ns,0.009527132,0.001937366,4.917569844,0.00000142,pos,ns,5.846570865,-0.000281435,0.0000666,-4.224108943,0.0000316,neg,ns,0.886721979,Adgrv1,Adgrv1_Exon,13,81523691,81523740,81523691,81523692,50,+,CGAGTGTCCCAGAATTTCGAATTATTGGCAGGTTTACCTTCACTGAGTTA,"Exon (Adgrv1-201/Adgrv1, exon 31 of 90)",13,81095068,81633154,538087,2,Adgrv1-201,109414,Adgrv1-201;Adgrv1-202;Adgrv1-208;Adgrv1-212,Adgrv1;Adgrv1;Adgrv1;Adgrv1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,5,110789,ENSMUSG00000069170,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1550,cg08218489,0.0000364,0.00000559,6.513859422,2.96E-10,gain,yes,-0.0000234,0.00000949,-2.467068472,0.01416269,neg,ns,-0.006237259,0.002780421,-2.243278212,0.025584918,neg,ns,1.592015975,0.0000026,0.0000956,0.027176504,0.978336442,pos,ns,0.775879115,Gm50093,Gm50093_Intergenic_downstream,18,13607440,13607489,13607488,13607489,50,-,CCTATTAAAAATTTCAGCTCTGCTTCTTATCACCTTTGCCCTCTTCTCCG,Distal Intergenic,18,13372089,13372552,464,1,Gm50093-201,235400,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,11,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22950,cg20562817,-0.00000241,0.00000401,-0.600203113,0.548809378,loss,ns,0.0000168,0.00000682,2.466826107,0.01417209,pos,ns,0.004449581,0.001996751,2.228410373,0.026570108,pos,ns,1.575606681,-0.000120446,0.0000687,-1.754024811,0.080414382,neg,ns,0.92519007,Gm13991,Gm13991_Intergenic_downstream,2,116322613,116322662,116322613,116322614,50,-,CGACTGACAGAAAAATACCGACCATGACAAGAAAAAAGAACATAATGTCC,Distal Intergenic,2,116527843,116528490,648,2,Gm13991-201,205877,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,14,20,433464,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8297,cg05081037,0.0000041,0.00000428,0.957032969,0.339296364,gain,ns,0.0000179,0.00000727,2.466626773,0.014179825,pos,ns,0.006878042,0.002130771,3.22795884,0.001380278,pos,ns,2.860033382,-0.000134097,0.0000733,-1.829996095,0.068210663,neg,ns,0.927205892,Zeb2,Zeb2_threeUTR,2,44987095,44987144,44987143,44987144,50,+,AAGTACAGAACTCATTAACTACATTCTTAGTTTGGCTACATTTTTATTCG,3' UTR,2,44983632,45117395,133764,2,Zeb2-212,130251,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,10,158,24136,ENSMUSG00000026872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24258,cg10583022,-0.0000529,0.0000194,-2.730559919,0.006684468,loss,ns,0.0000812,0.0000329,2.466556484,0.014182554,pos,ns,0.014814351,0.009644576,1.536029298,0.125551178,pos,ns,0.901179208,-0.000630901,0.000331676,-1.902160872,0.058076785,neg,ns,0.549615041,Pou3f1,Pou3f1_Intergenic_upstream,4,124375689,124375738,124375737,124375738,50,+,TTCCCCTCCTTTAATACTTGTGGGGGATGGTGTTTGCTTTATAATCTGCG,Distal Intergenic,4,124656807,124660655,3849,1,Pou3f1-201,-281069,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,24,85,18991,ENSMUSG00000090125,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20014,cg09629954,-0.00000449,0.00000133,-3.368294281,0.0008518,loss,ns,0.00000559,0.00000226,2.466549311,0.014182832,pos,ns,0.00146865,0.00066352,2.213420498,0.027596554,pos,ns,1.559145148,-0.000012,0.0000228,-0.524623549,0.600219858,neg,ns,0.048911232,Lsm12,Lsm12_Exon,11,102185077,102185126,102185125,102185126,50,-,GGATACTTAAAGCCAGCATTTTGGATTGGTAGTCAAAGGCTACCACCTCG,Promoter (<=1kb),11,102162497,102185229,22733,2,Lsm12-202,103,G6pc3-201;G6pc3-202;G6pc3-204;G6pc3-205;Lsm12-202;Lsm12-201;Lsm12-204;Lsm12-203;Lsm12-205,G6pc3;G6pc3;G6pc3;G6pc3;Lsm12;Lsm12;Lsm12;Lsm12;Lsm12,-4494;-4543;-4629;-4700;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,268490,ENSMUSG00000020922,conserved gene and region,11,102185110,102185342,233,*,233,34,0.755364807,1.024175824,0.145922747,2.02E-32,CpGisland,TRUE,U1,Pr-A
21461,cg01888904,0.0000163,0.00000317,5.145433127,0.000000475,gain,yes,-0.0000133,0.00000538,-2.466230912,0.014195198,neg,ns,-0.002967871,0.001576381,-1.882711967,0.060675707,neg,ns,1.216985156,0.0000306,0.0000542,0.563588111,0.573441926,pos,ns,0.898077399,Rbm6,Rbm6_fiveUTR,9,107833454,107833503,107833502,107833503,50,+,CGATGGCATCTTCCAAGAGTGAAAACTCCACGCAGACATAGCCATAGTCG,5' UTR,9,107773559,107872829,99271,2,Rbm6-201,39326,Rbm6-201;Rbm6-207;Rbm6-202;Rbm6-216;Rbm6-212;Rbm6-213;Rbm6-205,Rbm6;Rbm6;Rbm6;Rbm6;Rbm6;Rbm6;Rbm6,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,3,19654,ENSMUSG00000032582,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9871,cg14138447,-0.00000451,0.00000289,-1.563076302,0.119054884,loss,ns,-0.0000121,0.0000049,-2.466153942,0.014198188,neg,ns,0.005001604,0.001436533,3.481719003,0.000569766,pos,ns,3.244303639,-0.000112332,0.0000494,-2.273827805,0.023659823,neg,ns,0.917534338,Clk4,Clk4_Exon,11,51275413,51275462,51275413,51275414,50,+,CGATGTGTCCAGATGCTAGAATGGTTTGATCATCATGGTCATGTTTGTAT,"Exon (Clk4-201/Clk4, exon 7 of 13)",11,51263114,51281764,18651,1,Clk4-201,12299,Clk4-214;Clk4-205;Clk4-201;Clk4-204;Clk4-207;Clk4-212;Clk4-210;Clk4-203;Clk4-213;Clk4-202;Clk4-208;Clk4-211;Clk4-209,Clk4;Clk4;Clk4;Clk4;Clk4;Clk4;Clk4;Clk4;Clk4;Clk4;Clk4;Clk4;Clk4,13683;0;0;0;12249;0;12239;0;0;0;0;0;-4647,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,7,12750,ENSMUSG00000020385,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10039,cg01674452,-0.00000176,0.00000403,-0.43713429,0.662318313,loss,ns,-0.0000169,0.00000684,-2.466051165,0.014202183,neg,ns,-0.006248159,0.002003687,-3.118331061,0.001989493,neg,ns,2.701257546,0.000147172,0.0000689,2.135823426,0.03347706,pos,ns,0.860715107,Hnrnpc,Hnrnpc_fiveUTR,14,52097303,52097352,52097351,52097352,50,-,TGGACCTCACACCTCTTACCATCACCCAGGAAGGGTGTGCATCTGTTCCG,5' UTR,14,52073377,52104028,30652,2,Hnrnpc-201,6676,Hnrnpc-201;Hnrnpc-202;Hnrnpc-205;Hnrnpc-209;Hnrnpc-211;Hnrnpc-206;Hnrnpc-207;Hnrnpc-210;Hnrnpc-204;Hnrnpc-208;Hnrnpc-203;Hnrnpc-213;Hnrnpc-212,Hnrnpc;Hnrnpc;Hnrnpc;Hnrnpc;Hnrnpc;Hnrnpc;Hnrnpc;Hnrnpc;Hnrnpc;Hnrnpc;Hnrnpc;Hnrnpc;Hnrnpc,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,3,15381,ENSMUSG00000060373,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24821,cg22208523,-0.0000627,0.0000104,-6.008938846,5.24E-09,loss,yes,-0.0000437,0.0000177,-2.465697765,0.014215925,neg,ns,0.0159068,0.00519169,3.063896324,0.002376577,pos,ns,2.624048061,-0.001299878,0.000178542,-7.2805249,2.76E-12,neg,yes,0.746980648,Phc2,Phc2_fiveUTR,4,128743385,128743434,128743385,128743386,50,+,CGACCTCAGCAGCCCCGGCATGACCTCAGGGAACGGAAACTCTGCCTCCA,5' UTR,4,128654702,128752881,98180,1,Phc2-201,88683,Phc2-201;Phc2-203;Phc2-209;Phc2-202;Phc2-208;Phc2-205;Phc2-210;Phc2-204;Phc2-206,Phc2;Phc2;Phc2;Phc2;Phc2;Phc2;Phc2;Phc2;Phc2,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,13,54383,ENSMUSG00000028796,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7598,cg12813264,-0.000000988,0.00000177,-0.556371681,0.578358176,loss,ns,0.00000743,0.00000302,2.465617386,0.014219052,pos,ns,0.00288967,0.000883426,3.270982091,0.001192504,pos,ns,2.923540272,-0.0000856,0.0000304,-2.816673146,0.005163609,neg,ns,0.95722592,Zbtb20,Zbtb20_Intron,16,43371706,43371755,43371754,43371755,50,-,TATTTAAGTCATAGGAACTTCAAGCTAAAATTACTGCCTAGTCCTAATCG,"Intron (Zbtb20-209/Zbtb20, intron 7 of 7)",16,42875881,43463175,587295,1,Zbtb20-209,495825,Zbtb20-209;Zbtb20-211;Zbtb20-217;Zbtb20-218;Zbtb20-204;Zbtb20-215;Zbtb20-201;Zbtb20-203;Zbtb20-214;Zbtb20-213;Zbtb20-219;Zbtb20-216,Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,98,56490,ENSMUSG00000022708,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27014,cg02063736,0.00000582,0.00000855,0.680668401,0.496589405,gain,ns,-0.0000358,0.0000145,-2.465250215,0.014233345,neg,ns,0.010425371,0.004255223,2.450017756,0.01483763,pos,ns,1.828635465,-0.000476506,0.000146337,-3.256225786,0.001254057,neg,ns,0.101907323,Rbm39,Rbm39_threeUTR,2,156177821,156177870,156177821,156177822,50,-,CGATGCCATTCCTGAGATCTTCGCCCATTTCCGTTGGAGGGTTGGGACTG,3' UTR,2,156147239,156180238,33000,2,Rbm39-203,2368,Rbm39-203;Rbm39-217;Rbm39-215;Rbm39-201;Rbm39-225;Rbm39-223;Rbm39-204;Rbm39-216;Rbm39-221;Rbm39-213;Rbm39-214;Rbm39-218;Rbm39-219;Rbm39-210;Rbm39-224;Rbm39-212;Rbm39-202;Rbm39-208;Rbm39-222;Rbm39-205;Rbm39-211,Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,11,13,170791,ENSMUSG00000027620,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U4,Pr-F
3865,cg12241489,0.0000114,0.00000859,1.32539456,0.186016274,gain,ns,0.000036,0.0000146,2.465161609,0.014236796,pos,ns,0.002259141,0.004275066,0.528445906,0.597567988,pos,ns,0.223612676,-0.000158563,0.000147019,-1.078516551,0.281641774,neg,ns,0.867470681,5730522E02Rik,5730522E02Rik_Intron,11,25641707,25641756,25641707,25641708,50,+,CGATCTTATGAATAATAAAAAGTTACGGAAAATTGCATCCAGGCCTGCTA,"Intron (5730522E02Rik-207/5730522E02Rik, intron 1 of 2)",11,25602763,25648147,45385,2,5730522E02Rik-207,6391,5730522E02Rik-207;5730522E02Rik-202;5730522E02Rik-201;5730522E02Rik-206,5730522E02Rik;5730522E02Rik;5730522E02Rik;5730522E02Rik,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,90,70626,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26362,cg06330379,0.00000149,0.0000014,1.060002481,0.28996865,gain,ns,0.00000587,0.00000238,2.46448957,0.014262994,pos,ns,0.0000274,0.000698264,0.039287848,0.968686184,pos,ns,0.013816894,-0.00000808,0.000024,-0.33654369,0.736688615,neg,ns,0.979524967,Htr2c,Htr2c_Exon,X,147169639,147169688,147169639,147169640,50,+,CGTCCATCATGCACCTCTGCGCTATATCGCTGGATCGGTATGTAGCAATA,"Exon (Htr2c-201/Htr2c, exon 5 of 6)",20,146962513,147197274,234762,1,Htr2c-201,207126,Htr2c-201;Htr2c-202;Htr2c-207;Htr2c-203,Htr2c;Htr2c;Htr2c;Htr2c,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,8,15560,ENSMUSG00000041380,conserved gene and region,X,147169604,147169752,149,*,149,10,0.483221477,1.157731158,0.067114094,0.00000263,CpGisland,TRUE,U15,NS
19256,cg21464859,0.000017,0.00000754,2.252460069,0.02499249,gain,ns,-0.0000315,0.0000128,-2.464300414,0.014270376,neg,ns,-0.012966091,0.003750491,-3.457171374,0.000622138,neg,ns,3.206113577,0.00031852,0.000128979,2.469550199,0.014066757,pos,ns,0.816759071,Tnpo1,Tnpo1_Exon,13,98850153,98850202,98850201,98850202,50,-,CAAACGTAACCAAGACGACCAATTGTTATTGCTAAGGTAACGCAATCACG,"Exon (Tnpo1-201/Tnpo1, exon 20 of 24)",13,98839019,98891040,52022,2,Tnpo1-201,40838,Tnpo1-201;Tnpo1-202;Tnpo1-206;Tnpo1-204,Tnpo1;Tnpo1;Tnpo1;Tnpo1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,9,238799,ENSMUSG00000009470,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19684,cg22427423,0.00000097,0.00000142,0.683035453,0.495094577,gain,ns,-0.00000594,0.00000241,-2.464132937,0.014276915,neg,ns,-0.001553421,0.0007065,-2.19875521,0.028633856,neg,ns,1.543120168,0.0000434,0.0000243,1.785824014,0.075105134,pos,ns,0.956667398,Rab6a,Rab6a_Exon,7,100629691,100629740,100629691,100629692,50,+,CGGGTCAGGAACGTTTCCGTAGCCTCATTCCCAGTTACATCCGTGATTCT,"Exon (Rab6a-203/Rab6a, exon 4 of 8)",7,100607410,100641268,33859,1,Rab6a-203,22281,Gm14382-201;Rab6a-203;Rab6a-201;Rab6a-202;Rab6a-204,Gm14382;Rab6a;Rab6a;Rab6a;Rab6a,5173;0;0;0;-4608,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,19346,ENSMUSG00000030704,conserved gene and region,7,100629656,100629905,250,*,250,12,0.488,0.809716599,0.048,0.0000058,CpGisland,TRUE,NA,NRS
16396,cg19561061,-0.00000138,0.00000142,-0.973999453,0.33081621,loss,ns,0.00000592,0.0000024,2.463425688,0.014304556,pos,ns,0.001163374,0.000704443,1.651481094,0.099652952,pos,ns,1.00150983,-0.0000489,0.0000242,-2.019319026,0.044314388,neg,ns,0.967467306,Gm9400,Gm9400_Intron,17,84827404,84827453,84827404,84827405,50,+,CGCACAGTATTTGCCGAATCTATGGAAATCTTGGAAATGCTTTGACAGCT,"Intron (Gm49981-201/Gm49981-201, intron 2 of 3)",17,84852538,84853451,914,1,Gm9400-201,-25085,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,668848,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6919,cg07383477,-0.0000901,0.0000152,-5.934758798,7.87E-09,loss,yes,0.0000635,0.0000258,2.463074773,0.014318289,pos,ns,-0.0054025,0.007555953,-0.714999252,0.475147616,neg,ns,0.323171445,-0.000177855,0.000259849,-0.684456457,0.494198353,neg,ns,0.610324747,Gm12131,Gm12131_Intergenic_downstream,11,39543467,39543516,39543467,39543468,50,-,CGAGTCTCCATAGGATGTCAACAATAAAGGGGTTAATGAAGCATCCGATC,Distal Intergenic,11,39727070,39727712,643,2,Gm12131-201,184245,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,4,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23786,cg15456422,-0.0000107,0.0000052,-2.054310074,0.040783829,loss,ns,-0.0000218,0.00000884,-2.462986311,0.014321752,neg,ns,0.003632255,0.002589661,1.402599004,0.161737103,pos,ns,0.79119034,-0.0000369,0.0000891,-0.41481848,0.678561712,neg,ns,0.894633176,Mbnl2,Mbnl2_Exon,14,120385533,120385582,120385533,120385534,50,+,CGGTCACTGTCCCGGGCTCAACTGCAACTCAGAAACTTCTCAGGACTGAC,"Exon (Mbnl2-201/Mbnl2, exon 4 of 9)",14,120275669,120431697,156029,1,Mbnl2-201,109864,Mbnl2-201;Mbnl2-204;Mbnl2-206;Mbnl2-202;Mbnl2-203;Mbnl2-208;Mbnl2-210,Mbnl2;Mbnl2;Mbnl2;Mbnl2;Mbnl2;Mbnl2;Mbnl2,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,16,105559,ENSMUSG00000022139,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16323,cg14620780,0.00000981,0.00000857,1.145053406,0.253070288,gain,ns,-0.0000358,0.0000146,-2.462610922,0.014336459,neg,ns,-0.00626525,0.004264711,-1.469091343,0.142822059,neg,ns,0.845204712,-0.000500804,0.000146663,-3.41465943,0.00072362,neg,ns,0.791665792,Lrpprc,Lrpprc_Intron,17,84745056,84745105,84745104,84745105,50,+,CCTAGGTACAATTTAGCTGTCACTTACTTTAAAATTTACTCAAACATGCG,"Intron (Lrpprc-201/Lrpprc, intron 23 of 37)",17,84705247,84790558,85312,2,Lrpprc-201,45453,Lrpprc-201;Lrpprc-203;Lrpprc-204,Lrpprc;Lrpprc;Lrpprc,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,15,72416,ENSMUSG00000024120,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5138,cg22685630,-0.00000211,0.00000253,-0.832073888,0.406007747,loss,ns,0.0000106,0.0000043,2.462398826,0.014344774,pos,ns,0.004204797,0.001260421,3.336026797,0.00095317,pos,ns,3.020829614,-0.000119287,0.0000433,-2.751993319,0.00627216,neg,ns,0.947648377,Ppp1cb,Ppp1cb_threeUTR,5,32491140,32491189,32491188,32491189,50,+,CCAGCCATTTGACACCCTTTATGATGTCACACCTTTAACTTAAGGAGACG,3' UTR,5,32458843,32495523,36681,1,Ppp1cb-201,32297,Ppp1cb-201;Ppp1cb-203;Ppp1cb-206;Ppp1cb-205,Ppp1cb;Ppp1cb;Ppp1cb;Ppp1cb,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,2,19046,ENSMUSG00000014956,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3859,cg21016723,-0.0000141,0.00000546,-2.583498159,0.01023804,loss,ns,0.0000229,0.00000928,2.462279739,0.014349444,pos,ns,0.001720219,0.002718963,0.632674767,0.527412437,pos,ns,0.277849633,-0.000147688,0.0000935,-1.579463741,0.115249517,neg,ns,0.924367373,Celf4,Celf4_Intron,18,25609937,25609986,25609985,25609986,50,+,GAAATTCATGTTTAAATTTAAAAACAACATATTGACCCTGGGAGCCAGCG,"Intron (Celf4-202/Celf4, intron 2 of 12)",18,25477632,25753983,276352,2,Celf4-202,143997,Celf4-202;Celf4-201;Celf4-203;Celf4-207;Celf4-206;Celf4-209,Celf4;Celf4;Celf4;Celf4;Celf4;Celf4,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,59,108013,ENSMUSG00000024268,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27744,cg26186239,-0.000000768,0.00000898,-0.085505118,0.931915023,loss,ns,0.0000376,0.0000153,2.462097644,0.014356589,pos,ns,0.004366785,0.004471077,0.976673935,0.329492136,pos,ns,0.482154947,0.00000887,0.00015376,0.057667305,0.95405079,pos,ns,0.126700778,Eef1a2,Eef1a2_threeUTR,2,181147768,181147817,181147816,181147817,50,+,CTTTCCTCTTGAAGAACTTCCACTGGACCTTGATGGCGAGCATCCAGTCG,3' UTR,2,181147653,181157014,9362,2,Eef1a2-201,9197,Eef1a2-201,Eef1a2,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,13628,ENSMUSG00000016349,conserved gene and region,2,181147613,181148199,587,*,587,56,0.660988075,0.890671146,0.095400341,1.66E-41,CpGisland,TRUE,U3,Pr-B
3863,cg19076474,-0.00000479,0.0000061,-0.784660333,0.433251946,loss,ns,-0.0000255,0.0000104,-2.461851321,0.014366258,neg,ns,-0.010809751,0.003036028,-3.56049092,0.000428234,neg,ns,3.368318407,0.000254158,0.000104409,2.434262629,0.015486442,pos,ns,0.860712182,Fut9,Fut9_Exon,4,25620334,25620383,25620334,25620335,50,-,CGGCGGTAAGTCAGAGTCAGGTTAAACAAGTGCTCAATGCCACTCTTTTG,"Exon (Fut9-201/Fut9, exon 3 of 3)",4,25609332,25800146,190815,2,Fut9-201,179763,Fut9-201;Fut9-202,Fut9;Fut9,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,14348,ENSMUSG00000055373,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15369,cg02545439,0.0000324,0.00000297,10.9230431,1.03E-23,gain,yes,-0.0000124,0.00000504,-2.461567704,0.014377398,neg,ns,0.000727266,0.001476662,0.492506849,0.622709709,pos,ns,0.205714363,0.00000552,0.0000508,0.108782116,0.913445687,pos,ns,0.071091893,Galnt16,Galnt16_Exon,12,80519195,80519244,80519195,80519196,50,-,CGCCATCCTGACCGTAGCCTGGATCCTGGGCACTTTCTACTACTTATGGC,Promoter (<=1kb),12,80518277,80603892,85616,1,Galnt16-206,918,Galnt16-206;Galnt16-204;Galnt16-201,Galnt16;Galnt16;Galnt16,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,7,108760,ENSMUSG00000021130,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
1027,cg01799731,-0.00000391,0.00000291,-1.342806607,0.180316967,loss,ns,0.0000122,0.00000495,2.461527235,0.014378988,pos,ns,0.001612017,0.00145024,1.111551406,0.267192396,pos,ns,0.573175905,-0.0000659,0.0000499,-1.322107476,0.187107055,neg,ns,0.942717912,Gm14485,Gm14485_Intergenic_downstream,X,10962866,10962915,10962866,10962867,50,-,CGAAATATCCCCCAAGGCGAGATTGCCAGCCTTCTGGAAGGAGGTCTCAG,Distal Intergenic,20,11020515,11021007,493,2,Gm14485-201,58141,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,9,547156,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5778,cg11346099,-0.00000902,0.00000617,-1.461316145,0.144941563,loss,ns,0.0000258,0.0000105,2.461348609,0.014386009,pos,ns,-0.000872036,0.003073051,-0.283768926,0.776776898,neg,ns,0.109703699,-0.000148032,0.000105682,-1.400732804,0.162294161,neg,ns,0.84232805,Sox2,Sox2_Intron,3,34705563,34705612,34705563,34705564,50,-,CGAGGGCAGAGAAGCCAAGATCGGAGCAATGTGGTGATTTATTCTGAAGC,"Intron (Gm3143-201/Gm3143-201, intron 2 of 4)",3,34650405,34652461,2057,1,Sox2-201,55207,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,34,62,20674,ENSMUSG00000074637,mapped to different genes,3,34705563,34705682,120,*,120,10,0.541666667,1.268498943,0.083333333,0.000000362,CpGisland,TRUE,U15,NS
17927,cg12041561,0.0000194,0.00000437,4.446006806,0.0000122,gain,ns,0.0000182,0.00000742,2.460604056,0.014415307,pos,ns,0.00344118,0.002172715,1.58381586,0.114255225,pos,ns,0.942123929,0.000158146,0.0000747,2.116528008,0.035096524,pos,ns,0.074487602,Chst1,Chst1_Intron,2,92602225,92602274,92602273,92602274,50,+,CCTGAGTCACTGTATGGTTTCCATGGAAACAGACTTGTTCAGAGGACTCG,"Intron (Chst1-201/Chst1, intron 1 of 2)",2,92599707,92615250,15544,1,Chst1-201,2518,Chst1-201,Chst1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,2,76969,ENSMUSG00000027221,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
16777,cg06684787,-0.0000232,0.00000844,-2.745653812,0.006391648,loss,ns,0.0000353,0.0000143,2.460511055,0.01441897,pos,ns,0.012844734,0.004202635,3.056352867,0.002435376,pos,ns,2.613433964,-0.000460637,0.000144528,-3.187174033,0.001583243,neg,ns,0.308037772,Pcbp1,Pcbp1_Exon,6,86525159,86525208,86525159,86525160,50,-,CGTGCATCATGGCAAAGTGAGACTGTTGTCTTGCCACCTGGTTCAGCTTG,"Exon (Pcbp1-201/Pcbp1, exon 1 of 1)",6,86524492,86526321,1830,2,Pcbp1-201,1113,Pcbp1-201,Pcbp1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,14,15,23983,ENSMUSG00000051695,mapped to different genes,6,86525141,86525160,20,*,20,5,0.8,1.666666667,0.25,0.00000436,CpGisland,TRUE,U1,Pr-A
4256,cg08414235,0.0000214,0.0000117,1.834820047,0.067490459,gain,ns,0.0000487,0.0000198,2.460485673,0.01441997,pos,ns,0.001346187,0.00580257,0.231998369,0.816692354,pos,ns,0.08794151,0.0000328,0.00019955,0.164375266,0.869542858,pos,ns,0.699121213,Tpm3-rs2,Tpm3-rs2_Intergenic_downstream,4,27988231,27988280,27988231,27988232,50,-,CGGCTTTGTCCAGGGATCACAAGTTGTTCTGGGTGACTAGGCTCAGGACA,Distal Intergenic,4,27996583,27996905,323,2,Tpm3-rs2-201,8674,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,3,625912,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21721,cg18059870,0.0000108,0.00000771,1.398669757,0.162911669,gain,ns,-0.0000322,0.0000131,-2.460380745,0.014424105,neg,ns,-0.014440869,0.003837995,-3.762607977,0.000201051,neg,ns,3.696694705,0.000395005,0.000131988,2.99272974,0.002987165,pos,ns,0.173059026,Slitrk1,Slitrk1_Exon,14,108913223,108913272,108913223,108913224,50,+,CGTTTCCAGCGGCAAAACAAAGAGACGTCTCCAGCAACAGAATCCAAAGC,Promoter (<=1kb),14,108908800,108914158,5359,2,Slitrk1-201,886,Slitrk1-201,Slitrk1,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,17,76965,ENSMUSG00000075478,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
5911,cg22010026,-0.00000428,0.00000241,-1.780477694,0.075977101,loss,ns,0.0000101,0.00000409,2.460289266,0.01442771,pos,ns,0.002336548,0.00119744,1.95128604,0.051923505,pos,ns,1.284635998,-0.0000411,0.0000412,-0.998680133,0.318728559,neg,ns,0.946212471,C9orf72,C9orf72_Exon,4,35218640,35218689,35218640,35218641,50,-,CGAAGGATTTCTCCATTTAGAGTGTGGTTGGCAAGAAAAGTTATTTCTCC,"Exon (C9orf72-201/C9orf72, exon 2 of 10)",4,35191285,35226123,34839,2,C9orf72-201,7434,C9orf72-201;C9orf72-202;C9orf72-203;C9orf72-207;C9orf72-204;C9orf72-206,C9orf72;C9orf72;C9orf72;C9orf72;C9orf72;C9orf72,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,73205,ENSMUSG00000028300,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21825,cg19698493,0.00000486,0.00000312,1.55561825,0.120819185,gain,ns,0.0000131,0.00000531,2.459658717,0.014452582,pos,ns,0.002735562,0.001554514,1.759754001,0.079435821,pos,ns,1.099983609,-0.000135359,0.0000535,-2.531993907,0.011835193,neg,ns,0.918461063,Gm1943,Gm1943_Intron,8,109214402,109214451,109214450,109214451,50,-,CTATTAGCAAATCGGGGCTGAGAGTGAATCTTTATCACTTGGTGAGTGCG,"Intron (D030068K23Rik-202/D030068K23Rik-202, intron 5 of 9)",8,109340691,109340864,174,2,Gm1943-201,126462,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,28,384864,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19881,cg21244114,-0.00000782,0.00000146,-5.369473139,0.000000155,loss,yes,0.00000608,0.00000247,2.459263194,0.014468203,pos,ns,0.001468092,0.000724746,2.025664099,0.043655584,pos,ns,1.3599602,-0.0000502,0.0000249,-2.01288814,0.044990686,neg,ns,0.055784395,Gm45837,Gm45837_Exon,7,101451341,101451390,101451341,101451342,50,+,CGGCTGCGAGCATGGTCCTGGTGCTGCACCACATCCTCATCGCTGTTGTC,"Exon (Pde2a-205/Pde2a, exon 1 of 2)",7,101410886,101512819,101934,1,Gm45837-201,40455,Gm45837-201;Pde2a-201;Pde2a-212;Pde2a-202;Pde2a-209;Pde2a-204;Pde2a-206;Pde2a-205;Pde2a-211;Pde2a-207,Gm45837;Pde2a;Pde2a;Pde2a;Pde2a;Pde2a;Pde2a;Pde2a;Pde2a;Pde2a,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,6,,NA,mapped to different genes,7,101451139,101451457,319,*,319,38,0.727272727,0.934474252,0.119122257,2.51E-32,CpGisland,TRUE,U3,Pr-B
245,cg12328076,-0.0000118,0.00000765,-1.549101001,0.122377701,loss,ns,0.0000319,0.000013,2.459190831,0.014471062,pos,ns,0.012321326,0.003805948,3.237386805,0.001336926,pos,ns,2.873892477,-0.000257337,0.000130886,-1.966110708,0.050177913,neg,ns,0.886258611,Gm21992,Gm21992_Exon,19,4803745,4803794,4803745,4803746,50,+,CGGGCTTGCCCATCAAAGCCACCAGTGCTGTTGCCAAAAGCCTGCTGGTA,"Exon (Rbm14-201/Rbm14, exon 2 of 3)",19,4742913,4811612,68700,2,Gm21992-203,7818,Gm21992-203;Gm21992-206;Gm21992-204;Gm21992-201;Gm21992-205;Gm21992-202;Rbm14-201;Rbm14-202;Rbm14-203,Gm21992;Gm21992;Gm21992;Gm21992;Gm21992;Gm21992;Rbm14;Rbm14;Rbm14,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,27,48,102902673,ENSMUSG00000096370,mapped to different genes,19,4803640,4803746,107,*,107,10,0.672897196,0.949423248,0.093457944,0.000000121,CpGisland,TRUE,U10,Tr-S
14470,cg24310309,-0.0000377,0.00000617,-6.106176464,3.05E-09,loss,yes,-0.0000258,0.0000105,-2.458671188,0.014491611,neg,ns,0.010013793,0.003069442,3.26241428,0.001227893,pos,ns,2.910839619,-0.000312704,0.000105558,-2.962389211,0.003288767,neg,ns,0.757555989,Zc3h3,Zc3h3_Intron,15,75813331,75813380,75813379,75813380,50,-,TAATGACTAATCGATCTCATTAGCTTTCCTAATTAAAAACTTTACTACCG,"Intron (Zc3h3-201/Zc3h3, intron 3 of 11)",15,75754430,75841915,87486,2,Zc3h3-201,28535,Zc3h3-201;Zc3h3-203;Zc3h3-202,Zc3h3;Zc3h3;Zc3h3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,18,223642,ENSMUSG00000075600,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13266,cg00156720,0.0000455,0.00000828,5.491115417,8.33E-08,gain,yes,-0.0000346,0.0000141,-2.458561348,0.014495958,neg,ns,0.009478812,0.004121231,2.299995121,0.022112544,pos,ns,1.655361293,-0.0000692,0.000141729,-0.488558681,0.625499595,neg,ns,0.496193242,Gm44690,Gm44690_Intergenic_upstream,7,69950218,69950267,69950218,69950219,50,-,CGGTGGTTGGTAGCTAATGAAGGCCCCTTTAGTTTATCTTCATCAATTGT,Distal Intergenic,7,69883979,69884360,382,2,Gm44690-201,-65907,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,15,24,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22345,cg24839708,0.0000228,0.00000634,3.601584188,0.000368215,gain,ns,-0.0000265,0.0000108,-2.457907228,0.014521869,neg,ns,-0.00676763,0.003154244,-2.145563675,0.032684248,neg,ns,1.485661508,0.00000907,0.000108474,0.083607933,0.933422122,pos,ns,0.80382564,Brpf1,Brpf1_Exon,6,113319793,113319842,113319793,113319794,50,+,CGGGAGAGCCAGATGACCCCCAGCCACGGAGGCAGTCCTGTGGGGCCCCC,"Exon (Brpf1-204/Brpf1, exon 9 of 14)",6,113307137,113324857,17721,1,Brpf1-204,12656,Brpf1-204;Brpf1-209;Brpf1-203;Brpf1-202;Brpf1-201;Brpf1-210;Brpf1-208;Brpf1-205;Brpf1-207;Brpf1-206,Brpf1;Brpf1;Brpf1;Brpf1;Brpf1;Brpf1;Brpf1;Brpf1;Brpf1;Brpf1,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,16,78783,ENSMUSG00000001632,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27358,cg06388819,0.000076,0.00000823,9.228630139,4.41E-18,gain,yes,-0.0000344,0.000014,-2.4578441,0.014524372,neg,ns,-0.000117473,0.004098085,-0.028665243,0.977150022,neg,ns,0.010038754,0.000142979,0.000140933,1.01451934,0.311126161,pos,ns,0.316593428,Cdh22,Cdh22_Promoter,2,165242992,165243041,165242992,165242993,50,-,CGAGCGGCAGCAAGAAGCAGATTATAAATTAGAATCATTTTCGCCAACTG,Promoter (8-9kb),2,165111507,165234853,123347,2,Cdh22-201,-8188,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,7,23,104010,ENSMUSG00000053166,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
1388,cg23245556,-0.00000415,0.0000108,-0.385257929,0.700310535,loss,ns,-0.000045,0.0000183,-2.457796172,0.014526272,neg,ns,-0.016435869,0.005359994,-3.066397121,0.002357374,neg,ns,2.627571425,0.000495439,0.00018433,2.687787762,0.00758121,pos,ns,0.623646282,Utrn,Utrn_Exon,10,12614524,12614573,12614572,12614573,50,-,TGCCATCCTTTGTAAGCGATGCAACAAAACCACAACTTTCTGCAGAGACG,"Exon (Utrn-204/Utrn, exon 1 of 25)",10,12382188,12861735,479548,2,Utrn-201,247162,Utrn-201;Utrn-205;Utrn-204,Utrn;Utrn;Utrn,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,2,22288,ENSMUSG00000019820,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6243,cg01743578,-0.00000301,0.00000214,-1.409714984,0.159626299,loss,ns,-0.00000891,0.00000363,-2.457796012,0.014526279,neg,ns,-0.000299154,0.001062623,-0.281523906,0.778496423,neg,ns,0.108743379,0.00000119,0.0000365,0.032589494,0.974022921,pos,ns,0.943417883,Cnnm3,Cnnm3_Exon,1,36520164,36520213,36520212,36520213,50,+,GATGAATATAAAGTAACAATCTCGCCTCAGCTGCTCTTGGCCACCCAGCG,"Exon (Cnnm3-201/Cnnm3, exon 3 of 8)",1,36511867,36528237,16371,1,Cnnm3-201,8297,Cnnm3-201;Cnnm3-202;Cnnm3-204;Cnnm3-205;Cnnm3-203,Cnnm3;Cnnm3;Cnnm3;Cnnm3;Cnnm3,0;0;0;1595;-548,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,94218,ENSMUSG00000001138,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3948,cg22381406,-0.0000179,0.00000806,-2.217667549,0.027302301,loss,ns,0.0000336,0.0000137,2.457661885,0.014531598,pos,ns,0.001630418,0.004011163,0.406470097,0.684677688,pos,ns,0.164513825,-0.000150275,0.000137944,-1.089392825,0.276826818,neg,ns,0.856490971,5730522E02Rik,5730522E02Rik_Intron,11,25857697,25857746,25857697,25857698,50,+,CGATCATTTTATAGCCCCACTGGAATGGCTACAAGGGCATGTTGCTAAGC,"Intron (5730522E02Rik-202/5730522E02Rik, intron 2 of 5)",11,25617668,26210569,592902,2,5730522E02Rik-202,352823,5730522E02Rik-202;5730522E02Rik-201;5730522E02Rik-204,5730522E02Rik;5730522E02Rik;5730522E02Rik,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,90,70626,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21132,cg12594389,-0.00000424,0.00000376,-1.127942423,0.260216449,loss,ns,0.0000157,0.00000639,2.457626645,0.014532996,pos,ns,0.003561805,0.001870815,1.903878667,0.057851775,pos,ns,1.237683311,-0.000111127,0.0000643,-1.727252479,0.085118377,neg,ns,0.885603231,Cntn4,Cntn4_Exon,6,106489643,106489692,106489643,106489644,50,+,CGCCGCTTTGTTTCTCAAGAGACTGGGAATCTGTATATTGCCAAAGTAGA,"Exon (Cntn4-205/Cntn4, exon 9 of 20)",6,105677745,106674264,996520,1,Cntn4-205,811898,Cntn4-205;Cntn4-206;Cntn4-202;Cntn4-204;Cntn4-203;Cntn4-208;Cntn4-201,Cntn4;Cntn4;Cntn4;Cntn4;Cntn4;Cntn4;Cntn4,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,269784,ENSMUSG00000064293,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22255,cg14058051,-0.0000583,0.0000122,-4.761839151,0.00000295,loss,ns,0.0000511,0.0000208,2.45748418,0.014538648,pos,ns,0.000101196,0.006090042,0.016616604,0.986753168,pos,ns,0.005791471,-0.00018127,0.000209436,-0.865515005,0.387425496,neg,ns,0.673795194,Sox9,Sox9_Intergenic_upstream,11,112542761,112542810,112542761,112542762,50,-,CGCCCACCCAGAACTAATTAGACATTAGATTAGTGTCAACTGATTGATTT,Distal Intergenic,11,112782224,112787760,5537,1,Sox9-201,-239463,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,7,20682,ENSMUSG00000000567,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16379,cg06126658,0.00000681,0.00000881,0.773304778,0.439931286,gain,ns,-0.0000368,0.000015,-2.457406094,0.014541747,neg,ns,-0.005774803,0.004383321,-1.317449178,0.188660976,neg,ns,0.724317923,0.0000391,0.000150742,0.259208001,0.7956468,pos,ns,0.086326385,Mrm1,Mrm1_Intergenic_downstream,11,84780231,84780280,84780279,84780280,50,+,AATAAAGTCATTCCACAAGTGACTAAATCTCTTAATTCACAAGGTACACG,Distal Intergenic,11,84814743,84815390,648,2,Mrm1-203,35110,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,37,42,217038,ENSMUSG00000018405,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
1742,cg15332580,-0.0000216,0.00000719,-3.011085066,0.002817236,loss,ns,-0.00003,0.0000122,-2.457391411,0.01454233,neg,ns,-0.007220327,0.003576152,-2.019021205,0.044345517,neg,ns,1.353150279,-0.0000236,0.000122984,-0.191575721,0.84819998,neg,ns,0.854507965,Gm5513,Gm5513_Intergenic_downstream,19,14940737,14940786,14940737,14940738,50,+,CGCTGATTATGGTGATAAAATTCCCAGCACTGTGTGTCTGTGGGCCCAAC,Distal Intergenic,19,14959549,14960766,1218,2,Gm5513-201,19980,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,22,433225,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
122,cg14780346,-0.0000187,0.0000057,-3.280521186,0.001154218,loss,ns,0.0000238,0.00000969,2.457278811,0.0145468,pos,ns,0.008710227,0.002837475,3.069710483,0.002332152,pos,ns,2.63224313,-0.000333098,0.0000976,-3.413569103,0.000726415,neg,ns,0.866882829,Gm49780,Gm49780_Intergenic_downstream,17,4301555,4301604,4301603,4301604,50,+,ATCTCATTTAGTGCAACTGTTGCAATATTAATAAACTGAACTTATGATCG,Distal Intergenic,17,4792646,4792959,314,2,Gm49780-201,491355,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16008,cg24253814,3.78E-08,0.00000154,0.024502535,0.980467526,gain,ns,0.00000645,0.00000262,2.457244804,0.01454815,pos,ns,0.0000231,0.000768766,0.030079734,0.976022819,pos,ns,0.010540029,0.0000399,0.0000264,1.510307861,0.131983485,pos,ns,0.965283041,Trim2,Trim2_Exon,3,84193319,84193368,84193319,84193320,50,-,CGTGCACTCCCGACACATGGCAGTCTCACAGGACTGGCAGTAAAATTCCA,"Exon (Trim2-204/Trim2, exon 4 of 12)",3,84160439,84304809,144371,2,Trim2-204,111441,Trim2-204;Trim2-203;Trim2-206;Trim2-205;Trim2-202;Trim2-208;Trim2-201;Trim2-213;Trim2-212;Trim2-218;Trim2-207;Trim2-209;Trim2-215,Trim2;Trim2;Trim2;Trim2;Trim2;Trim2;Trim2;Trim2;Trim2;Trim2;Trim2;Trim2;Trim2,0;0;0;0;0;0;0;-2796;0;-1771;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,4,80890,ENSMUSG00000027993,conserved gene and region,3,84193215,84193340,126,*,126,9,0.650793651,0.681081081,0.071428571,0.00000623,CpGisland,TRUE,NA,NRS
22518,cg07095292,0.0000242,0.0000094,2.573884986,0.01052064,gain,ns,0.0000393,0.000016,2.457224777,0.014548946,pos,ns,0.00165301,0.00468057,0.353164294,0.724205304,pos,ns,0.140138299,0.0000501,0.000160964,0.31132279,0.755764495,pos,ns,0.134042848,Olfm3,Olfm3_Promoter,3,114904947,114904996,114904995,114904996,50,-,AAAGCAGGGAAGCGTTTTCCAGCTGATCCTGGTCAATAATACTCCCATCG,Promoter (<=1kb),3,114904078,115125722,221645,1,Olfm3-202,869,Olfm3-202;Olfm3-203,Olfm3;Olfm3,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,1,2,229759,ENSMUSG00000027965,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10108,cg27633294,0.0000046,0.00000471,0.976404096,0.32962557,gain,ns,-0.0000197,0.00000801,-2.457014182,0.01455731,neg,ns,-0.001485797,0.002345935,-0.633349472,0.526972422,neg,ns,0.278212112,-0.0000478,0.0000807,-0.593016101,0.553602745,neg,ns,0.906598631,Neb,Neb_Intron,2,52185894,52185943,52185942,52185943,50,-,AGAACAACCCAATATCATAGGCAGAACCTATGACATCCTTGCAGCAGACG,"Intron (Neb-202/Neb, intron 123 of 156)",2,52136647,52338798,202152,2,Neb-202,152855,Neb-202;Neb-201;Neb-203;Neb-213;Neb-214;Neb-209,Neb;Neb;Neb;Neb;Neb;Neb,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,8,17996,ENSMUSG00000026950,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26630,cg17807053,0.0000127,0.00000662,1.913314514,0.056628741,gain,ns,-0.0000276,0.0000112,-2.457013705,0.014557329,neg,ns,-0.005268757,0.003293609,-1.599691026,0.110685767,neg,ns,0.95590822,0.0000938,0.000113267,0.827928748,0.408347767,pos,ns,0.909004356,Pex14,Pex14_Intron,4,149044630,149044679,149044630,149044631,50,-,CGTGGGGGATATAGCAAAGAACAGCATAAACGAGCGAATCCAATTTAAAC,"Intron (Pex14-201/Pex14, intron 2 of 8)",4,148960535,149099876,139342,2,Pex14-201,55197,Pex14-201;Pex14-202;Pex14-205;Pex14-203;Pex14-204,Pex14;Pex14;Pex14;Pex14;Pex14,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,41,48,56273,ENSMUSG00000028975,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10328,cg12735070,0.0000192,0.00000932,2.058403799,0.040386872,gain,ns,0.0000389,0.0000158,2.455717173,0.014608919,pos,ns,0.008178018,0.004637048,1.763625821,0.07878003,pos,ns,1.103583861,-0.00030413,0.000159468,-1.907156016,0.057424502,neg,ns,0.481540882,Akap6,Akap6_Intron,12,53061868,53061917,53061916,53061917,50,+,AGTTTGAATTCCATCCTACATTAAGACTTCTTTCACAGCTATTTAGCTCG,"Intron (Akap6-201/Akap6, intron 9 of 13)",12,52699383,53155599,456217,1,Akap6-201,362485,Akap6-201;Akap6-202,Akap6;Akap6,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,13,238161,ENSMUSG00000061603,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12865,cg09426768,-0.0000225,0.00000712,-3.155138514,0.00176166,loss,ns,0.0000297,0.0000121,2.454910245,0.014641109,pos,ns,0.003350234,0.003542083,0.945837242,0.344968247,pos,ns,0.462220878,-0.000268515,0.000121812,-2.204338359,0.028235038,neg,ns,0.885329931,Cadm2,Cadm2_Intron,16,67530139,67530188,67530139,67530140,50,-,CGGTGTTTAACATATAAGAATACAACCAATTTGTCTCAGAGGCCTGAGGG,"Intron (Cadm2-201/Cadm2, intron 1 of 9)",16,66655421,67620908,965488,2,Cadm2-201,90720,Cadm2-201;Cadm2-202;Cadm2-203;Cadm2-204,Cadm2;Cadm2;Cadm2;Cadm2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,9,239857,ENSMUSG00000064115,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16808,cg21855301,0.0000187,0.00000365,5.123041374,0.00000053,gain,yes,-0.0000152,0.00000621,-2.454893475,0.014641779,neg,ns,-0.001261726,0.001817896,-0.694058354,0.488165385,neg,ns,0.311433019,-0.0000756,0.0000625,-1.209475367,0.227401828,neg,ns,0.933983642,Esrrb,Esrrb_Intergenic_downstream,12,86558518,86558567,86558518,86558519,50,-,CGGCTATTACCCAAAATAATTTATCAATGTGTAATAGCTTTGTGCAGGCC,Distal Intergenic,12,86504409,86509967,5559,1,Esrrb-205,54158,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,19,26380,ENSMUSG00000021255,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
939,cg24302947,-0.00000649,0.0000137,-0.471939322,0.637302114,loss,ns,0.0000573,0.0000234,2.454306722,0.014665226,pos,ns,-0.016367083,0.006842671,-2.391914309,0.017356344,neg,ns,1.760541741,0.000686322,0.000235319,2.916560452,0.003797447,pos,ns,0.202742098,Gata3,Gata3_Promoter,2,9892560,9892609,9892608,9892609,50,+,GGAAGTGATTTTTCATTCGGCGCTTGCCTGCTCACCAGTGTTTTATGGCG,Promoter (2-3kb),2,9874702,9890034,15333,2,Gata3-202,-2526,9230102O04Rik-202;Gata3-202;Gata3-204;Gata3-203,9230102O04Rik;Gata3;Gata3;Gata3,-3020;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,12,21,14462,ENSMUSG00000015619,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
10780,cg05413840,-0.000000694,0.00000588,-0.117959792,0.90617591,loss,ns,-0.0000245,0.00001,-2.454057777,0.014675184,neg,ns,-0.012265487,0.002928673,-4.18806949,0.0000367,neg,ns,4.43520909,0.000353767,0.000100717,3.512490801,0.000509937,pos,ns,0.860460986,Vti1a,Vti1a_Intron,19,55390384,55390433,55390384,55390385,50,-,CGTCTGGCCGCATCTCAGATGTGTCACCTATGCCGGGAGGGAATAAGGAA,"Intron (Vti1a-206/Vti1a, intron 4 of 7)",19,55316295,55577001,260707,1,Vti1a-206,74089,Vti1a-206;Vti1a-202;Vti1a-201;Vti1a-203,Vti1a;Vti1a;Vti1a;Vti1a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,32,53611,ENSMUSG00000024983,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9487,cg07402002,-0.000000103,0.00000274,-0.037476956,0.970128836,loss,ns,-0.0000114,0.00000466,-2.453900685,0.014681471,neg,ns,0.001114639,0.001364825,0.816690118,0.414732693,pos,ns,0.382231729,-0.0000228,0.0000469,-0.485718946,0.627509572,neg,ns,0.946677908,E2f8,E2f8_Exon,7,48875009,48875058,48875057,48875058,50,+,CTCCCCAATTAAAATCTTGGCAGCAACTTCTAGGCTTACTATCTGAGGCG,"Exon (E2f8-201/E2f8, exon 6 of 13)",7,48866429,48881041,14613,2,E2f8-201,5983,E2f8-201;E2f8-202;E2f8-204;E2f8-203,E2f8;E2f8;E2f8;E2f8,0;0;0;5946,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,108961,ENSMUSG00000046179,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23900,cg19569628,-0.00000328,0.00000332,-0.986685306,0.32456641,loss,ns,-0.0000139,0.00000565,-2.453686601,0.014690043,neg,ns,-0.002184925,0.001654818,-1.320341095,0.187695165,neg,ns,0.726546915,0.0000971,0.0000569,1.706322728,0.088949506,pos,ns,0.905236696,Csnk1d,Csnk1d_threeUTR,11,120964971,120965020,120964971,120964972,50,-,CGAGCAGCTACTTGCCGTGGTGTTCGAAAGGAATGCTATTCTGAGGTGGG,3' UTR,11,120958990,120991330,32341,2,Csnk1d-209,26310,Csnk1d-209;Csnk1d-202;Csnk1d-201;Csnk1d-203;Csnk1d-205;Csnk1d-204;Slc16a3-208,Csnk1d;Csnk1d;Csnk1d;Csnk1d;Csnk1d;Csnk1d;Slc16a3,0;0;0;0;0;3041;15890,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,5,104318,ENSMUSG00000025162,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26694,cg04117529,0.00000238,0.00000829,0.287481612,0.773935659,gain,ns,0.0000345,0.0000141,2.453257928,0.01470722,pos,ns,0.012886599,0.004124797,3.124177734,0.001951575,pos,ns,2.709614755,-0.000321366,0.000141851,-2.265513475,0.024170825,neg,ns,0.747950023,Wnk3,Wnk3_Exon,X,151232957,151233006,151233005,151233006,50,-,TTCTTCCATGAAAGTGATTCCAAAGCTGTTGCTAAATCCATTAGAGACCG,"Exon (Wnk3-205/Wnk3, exon 7 of 22)",20,151198078,151315186,117109,1,Wnk3-205,34879,Wnk3-205;Wnk3-206;Wnk3-204;Wnk3-201,Wnk3;Wnk3;Wnk3;Wnk3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,3,279561,ENSMUSG00000041245,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18897,cg09383518,0.00000663,0.00000797,0.832342602,0.40585633,gain,ns,-0.0000332,0.0000135,-2.453141205,0.0147119,neg,ns,-0.004362895,0.003966496,-1.099936735,0.272213109,neg,ns,0.565090964,-0.000147796,0.000136407,-1.083491591,0.27943227,neg,ns,0.78959913,Dach1,Dach1_Intron,14,97866454,97866503,97866502,97866503,50,+,CTTAATTATAGCAACAGATGCTCGAGTGTAGGAACCAGAAAAATCAAACG,"Intron (Dach1-201/Dach1, intron 6 of 10)",14,97786853,98169543,382691,2,Dach1-201,303040,Dach1-201;Dach1-202;Dach1-203,Dach1;Dach1;Dach1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,76,13134,ENSMUSG00000055639,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5558,cg19950812,-0.00000451,0.0000045,-1.001023106,0.317596356,loss,ns,-0.0000188,0.00000765,-2.453092514,0.014713853,neg,ns,-0.001738472,0.002240182,-0.776040516,0.438316717,neg,ns,0.358211965,-0.0000758,0.000077,-0.983681448,0.326039263,neg,ns,0.848291864,Kalrn,Kalrn_Exon,16,34256184,34256233,34256184,34256185,50,-,CGCTGACCTGAGCTGCTGGATAAGGTCTTCGCCTTCCTTGATGACATTGA,"Exon (Kalrn-201/Kalrn, exon 12 of 60)",16,33975495,34456917,481423,2,Kalrn-201,200684,Kalrn-201;Kalrn-217;Kalrn-208;Kalrn-207;Kalrn-206;Kalrn-202;Kalrn-205;Kalrn-204;Kalrn-218;Kalrn-203;Kalrn-216;Kalrn-213,Kalrn;Kalrn;Kalrn;Kalrn;Kalrn;Kalrn;Kalrn;Kalrn;Kalrn;Kalrn;Kalrn;Kalrn,0;0;0;0;0;0;0;0;0;0;0;-3869,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,18,22,545156,ENSMUSG00000061751,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2774,cg02481736,0.0000171,0.0000104,1.639086083,0.102209751,gain,ns,0.0000433,0.0000177,2.452850928,0.014723545,pos,ns,0.009949175,0.005177605,1.921578567,0.055575424,pos,ns,1.255117217,-0.00025837,0.000178057,-1.451049032,0.147777352,neg,ns,0.155048245,Prdm13,Prdm13_Promoter,4,21688334,21688383,21688334,21688335,50,+,CGGCCGTATTGTCCCTTATTAAAAAGACACATTAATTACATGGTCTCAGC,Promoter (2-3kb),4,21677481,21685963,8483,2,Prdm13-202,-2371,Prdm13-205;Prdm13-201;Prdm13-202;Prdm13-203;Prdm13-206;Prdm13-204,Prdm13;Prdm13;Prdm13;Prdm13;Prdm13;Prdm13,0;0;0;0;0;-2489,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,19,23,230025,ENSMUSG00000040478,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8382,cg27382459,-0.00000229,0.0000066,-0.346582015,0.729140491,loss,ns,-0.0000275,0.0000112,-2.452676605,0.014730542,neg,ns,-0.00634834,0.003284358,-1.932901449,0.054158912,neg,ns,1.26633007,0.000370828,0.000112949,3.283154079,0.001143854,pos,ns,0.85735373,Zeb2,Zeb2_Intron,2,45073145,45073194,45073145,45073146,50,+,CGCTAACCCCAGGGCTCATTTGCATAAGGTCTCTGTTGTGACAATTAGTT,"Intron (Zeb2-212/Zeb2, intron 3 of 10)",2,44983632,45117395,133764,2,Zeb2-212,44201,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11234,cg20391664,0.000108535,0.0000139,7.796345223,9.76E-14,gain,yes,0.000058,0.0000237,2.452552115,0.014735541,pos,ns,0.025431976,0.006928789,3.6704793,0.000284968,pos,ns,3.545204408,-0.000029,0.00023828,-0.121907101,0.903051578,neg,ns,0.353337858,Nr4a2,Nr4a2_Intron,2,57109270,57109319,57109318,57109319,50,-,AATTTCATTTTAAAAAGCACTTAATGAGGTTCTCTAAAATATATAACCCG,"Intron (Nr4a2-201/Nr4a2, intron 5 of 7)",2,57106830,57115038,8209,2,Nr4a2-201,5719,Nr4a2-201;Nr4a2-203;Nr4a2-206;Nr4a2-202;Nr4a2-205;Nr4a2-204,Nr4a2;Nr4a2;Nr4a2;Nr4a2;Nr4a2;Nr4a2,0;0;0;0;0;5054,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,25,18227,ENSMUSG00000026826,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
27025,cg24331498,0.000000716,0.00000506,0.141490626,0.887574268,gain,ns,0.0000211,0.00000859,2.452500922,0.014737597,pos,ns,0.0000721,0.002517689,0.028647537,0.977164132,pos,ns,0.010032483,-0.0000293,0.0000866,-0.33833385,0.735340642,neg,ns,0.840136407,Epb41l1,Epb41l1_Exon,2,156534673,156534722,156534721,156534722,50,-,TTATATTCTGCAGATCATCGGGAAAGATGTCCTCACCAGCACCTACGGCG,"Exon (Epb41l1-203/Epb41l1, exon 20 of 23)",2,156420909,156543214,122306,1,Epb41l1-203,113764,Epb41l1-203;Epb41l1-204;Epb41l1-206;Epb41l1-202;Epb41l1-205;Epb41l1-201;Epb41l1-207,Epb41l1;Epb41l1;Epb41l1;Epb41l1;Epb41l1;Epb41l1;Epb41l1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,4,13821,ENSMUSG00000027624,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1959,cg13472665,-0.00000254,0.00000162,-1.566541196,0.11824215,loss,ns,0.00000676,0.00000276,2.452485365,0.014738221,pos,ns,0.000553909,0.000808071,0.685470489,0.49355934,pos,ns,0.306660625,-0.0000323,0.0000278,-1.161818987,0.246202729,neg,ns,0.951229295,Tfec,Tfec_Intergenic_downstream,6,16607406,16607455,16607406,16607407,50,-,CGCATCCAGGTTTAATGAGGCATGTCAATATGCGGACTGGGCAACATCAG,Distal Intergenic,6,16834692,16835263,572,2,Tfec-204,227857,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,19,23,21426,ENSMUSG00000029553,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20870,cg01637282,-0.00000319,0.00000121,-2.64959065,0.008472133,loss,ns,0.00000502,0.00000205,2.452406724,0.01474138,pos,ns,0.001198139,0.000599918,1.997171121,0.046680443,pos,ns,1.330865034,-0.000052,0.0000206,-2.519855138,0.012242532,neg,ns,0.044519664,Pax6,Pax6_fiveUTR,2,105675487,105675536,105675487,105675488,50,+,CGGCCTCATTTCCCGCTCTGGTTCAGGCGCAGGAGGAAGTGTTTTGCTGG,Promoter (<=1kb),2,105675513,105697361,21849,1,Pax6-225,0,Pax6-206;Pax6-207;Pax6-210;Pax6-214;Pax6-208;Pax6-217;Pax6-226;Pax6-220;Pax6-202;Pax6-205;Pax6-225;Pax6-204;Pax6-201;Pax6-203;Pax6-224;Pax6-219,Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,15,78,18508,ENSMUSG00000027168,conserved gene and region,2,105675189,105675515,327,*,327,31,0.620795107,1.001679842,0.094801223,3.92E-23,CpGisland,TRUE,U3,Pr-B
3777,cg02733100,0.000013,0.00000576,2.249797071,0.02516307,gain,ns,0.000024,0.00000979,2.452093794,0.014753957,pos,ns,0.009062708,0.002867008,3.161033545,0.001727494,pos,ns,2.762583434,-0.000261014,0.0000986,-2.647308347,0.008528231,neg,ns,0.123134809,5730522E02Rik,5730522E02Rik_Intron,11,25357073,25357122,25357121,25357122,50,-,ACAAATATCTAGACAGCAATATTTTCTGCTTGAATGCTTCGAGCAGCTCG,"Intron (4933427E13Rik-204/4933427E13Rik-204, intron 1 of 1)",11,25602816,25620098,17283,2,5730522E02Rik-205,263025,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,90,70626,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17168,cg12654461,-0.00000585,0.00000432,-1.353546834,0.176867074,loss,ns,0.000018,0.00000734,2.452076252,0.014754662,pos,ns,0.002670772,0.002150758,1.241781734,0.215255792,pos,ns,0.667045154,-0.000179686,0.000074,-2.429353178,0.015693683,neg,ns,0.910166182,Ano4,Ano4_threeUTR,10,88995306,88995355,88995354,88995355,50,+,ATTGGATTCATCCGCTCTTTCTTGGAATACTTGGCTTCAAACTGGGGTCG,3' UTR,10,88948994,89257790,308797,2,Ano4-206,262435,Ano4-206;Ano4-204;Ano4-208;Ano4-210;Ano4-207;Ano4-211,Ano4;Ano4;Ano4;Ano4;Ano4;Ano4,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,8,9,320091,ENSMUSG00000035189,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7472,cg05041395,0.0000419,0.0000117,3.58823198,0.000386791,gain,ns,-0.0000486,0.0000198,-2.45178633,0.014766322,neg,ns,0.016849069,0.005811762,2.899132548,0.00400905,pos,ns,2.396958579,-0.000693255,0.000199866,-3.46859912,0.00059722,neg,ns,0.530389893,Ppp2r2b,Ppp2r2b_Exon,18,42737946,42737995,42737994,42737995,50,+,ATCTTATTTTATTGATTTTTTCTTCTATTTCTAAACTCTTCAGGTAATCG,"Exon (Ppp2r2b-204/Ppp2r2b, exon 3 of 9)",18,42637432,42899503,262072,2,Ppp2r2b-204,161508,Ppp2r2b-204;Ppp2r2b-202;Ppp2r2b-201;Ppp2r2b-203;Ppp2r2b-208;Ppp2r2b-207;Ppp2r2b-205,Ppp2r2b;Ppp2r2b;Ppp2r2b;Ppp2r2b;Ppp2r2b;Ppp2r2b;Ppp2r2b,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,15,72930,ENSMUSG00000024500,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17436,cg17659732,-0.00000504,0.00000291,-1.731746303,0.084313534,loss,ns,0.0000121,0.00000494,2.451262102,0.014787427,pos,ns,0.004649601,0.001448546,3.209839619,0.001467273,pos,ns,2.833488958,-0.00014343,0.0000498,-2.879238506,0.004263706,neg,ns,0.947063986,Tox3,Tox3_Intron,8,90272237,90272286,90272237,90272238,50,-,CGGATAAACACTCATTCTTGATATGTGGCATTTGGCTGTTTTCATTACCA,"Intron (Tox3-201/Tox3, intron 2 of 6)",8,90247040,90348343,101304,2,Tox3-201,76057,Tox3-201;Tox3-203;Tox3-202,Tox3;Tox3;Tox3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,19,244579,ENSMUSG00000043668,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18535,cg01209550,0.0000349,0.0000122,2.864731523,0.004458605,gain,ns,0.0000507,0.0000207,2.450944992,0.014800206,pos,ns,0.013651689,0.006059774,2.252838116,0.024968356,pos,ns,1.602610047,-0.0000139,0.000208395,-0.066511313,0.947013625,neg,ns,0.244403264,Hoxb8,Hoxb8_Promoter,11,96281694,96281743,96281694,96281695,50,+,CGAAGCTGCAGTTTTATAGCTGTAGAGGAAAGAACTCGTAAAATGCTAAC,Promoter (<=1kb),11,96281905,96285315,3411,1,Hoxb8-201,-162,Hoxb7-201;Hoxb8-201;Hoxb8-202;Hoxb8-203,Hoxb7;Hoxb8;Hoxb8;Hoxb8,0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,6,26,15416,ENSMUSG00000056648,mapped to different genes,11,96281580,96281823,244,*,244,15,0.471311475,1.107748184,0.06147541,1.03E-08,CpGisland,TRUE,U13,Hc-P
12298,cg07595201,-0.00000856,0.0000139,-0.613957904,0.53969342,loss,ns,0.0000581,0.0000237,2.450917889,0.014801299,pos,ns,0.01783853,0.006938916,2.570794878,0.01061295,pos,ns,1.974163881,-0.000346355,0.000238629,-1.451439544,0.147668718,neg,ns,0.711018522,Gm18541,Gm18541_Intergenic_upstream,9,63876529,63876578,63876577,63876578,50,-,ACAAGTCTTATTAATTTAGCTCAATCAAATCAGCACCACGTTAATTTACG,Distal Intergenic,9,63898265,63898802,538,1,Gm18541-201,-21736,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,13,100417338,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10563,cg14278050,-0.00000393,0.00000179,-2.196260339,0.02881364,loss,ns,0.00000744,0.00000304,2.450869193,0.014803263,pos,ns,0.002336869,0.000889561,2.626992303,0.009042489,pos,ns,2.043712032,-0.0000273,0.0000306,-0.89254061,0.372795539,neg,ns,0.056400394,Fnip1,Fnip1_fiveUTR,11,54438165,54438214,54438165,54438166,50,+,CGCCGTGGCCGTTTGAAGTGACTAATTTCTGTCATATGACTGAGGCGCCC,Promoter (<=1kb),11,54438199,54518235,80037,1,Fnip1-201,0,Fnip1-201,Fnip1,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,7,216742,ENSMUSG00000035992,conserved gene and region,11,54437949,54438290,342,*,342,41,0.722222222,0.932189868,0.119883041,5.68E-35,CpGisland,TRUE,U2,Pr-W
15728,cg25600393,-0.00000358,0.00000418,-0.857488497,0.3918374,loss,ns,-0.0000174,0.0000071,-2.450506251,0.014817904,neg,ns,-0.006502311,0.002079558,-3.126774762,0.001934947,neg,ns,2.713330936,0.000136733,0.0000715,1.911931025,0.056806699,pos,ns,0.896007733,Rgs6,Rgs6_Exon,12,82985339,82985388,82985387,82985388,50,+,TGTGCCCATCAGAACAGTCAAGAGCTTTCTCTCCAAAATCCCCAGTGTCG,"Exon (Rgs6-219/Rgs6, exon 3 of 4)",12,82588292,83047592,459301,1,Rgs6-219,397047,Rgs6-219;Rgs6-209;Rgs6-202;Rgs6-203;Rgs6-216;Rgs6-222;Rgs6-208;Rgs6-205;Rgs6-217;Rgs6-215;Rgs6-206;Rgs6-221;Rgs6-201;Rgs6-212;Rgs6-213;Rgs6-211;Rgs6-204;Rgs6-207,Rgs6;Rgs6;Rgs6;Rgs6;Rgs6;Rgs6;Rgs6;Rgs6;Rgs6;Rgs6;Rgs6;Rgs6;Rgs6;Rgs6;Rgs6;Rgs6;Rgs6;Rgs6,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,5,50779,ENSMUSG00000021219,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8428,cg19123296,0.000079,0.00000978,8.072679726,1.53E-14,gain,yes,-0.0000407,0.0000166,-2.450472184,0.014819279,neg,ns,-0.008423543,0.004867701,-1.730497197,0.084536625,neg,ns,1.072955094,0.000448519,0.0001674,2.679329671,0.007770875,pos,ns,0.207674127,Zeb2,Zeb2_fiveUTR,2,45113010,45113059,45113058,45113059,50,-,TTTCGGCCACTCCAGGAAACACAAACCTGGGGACGGACTGACGTGTTACG,5' UTR,2,44983632,45117395,133764,2,Zeb2-212,4336,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219;Zeb2-211;Zeb2-210;Zeb2-205;Zeb2-223;Zeb2-217;Zeb2-225;Zeb2-204;Zeb2-206;Zeb2-230,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;-2934;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,15,158,24136,ENSMUSG00000026872,mapped to different genes,2,45112883,45113059,177,*,177,11,0.548022599,0.842857143,0.062146893,0.00000144,CpGisland,TRUE,U1,Pr-A
1715,cg18328183,-0.00000631,0.00000381,-1.656505173,0.098631315,loss,ns,0.0000159,0.00000648,2.449933101,0.014841051,pos,ns,0.004374102,0.001897068,2.305716424,0.021786272,pos,ns,1.661817079,-0.000133135,0.0000652,-2.040698142,0.042127718,neg,ns,0.925547985,Slc4a7,Slc4a7_Exon,14,14762392,14762441,14762440,14762441,50,+,TTTTCTTGAGTGACTTCAAGGATGCATTAAGCCTGCAGTGCCTGGCCTCG,"Exon (Slc4a7-201/Slc4a7, exon 12 of 25)",14,14702279,14799940,97662,1,Slc4a7-201,60113,Slc4a7-201;Slc4a7-220;Slc4a7-218;Slc4a7-202;Slc4a7-205;Slc4a7-207;Slc4a7-210;Slc4a7-217;Slc4a7-219;Slc4a7-223;Slc4a7-224;Slc4a7-225;Slc4a7-215;Slc4a7-203;Slc4a7-211;Slc4a7-204;Slc4a7-208;Slc4a7-212;Slc4a7-214;Slc4a7-206;Slc4a7-221;Slc4a7-213,Slc4a7;Slc4a7;Slc4a7;Slc4a7;Slc4a7;Slc4a7;Slc4a7;Slc4a7;Slc4a7;Slc4a7;Slc4a7;Slc4a7;Slc4a7;Slc4a7;Slc4a7;Slc4a7;Slc4a7;Slc4a7;Slc4a7;Slc4a7;Slc4a7;Slc4a7,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;-1326,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,218756,ENSMUSG00000021733,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20772,cg11681335,0.0000538,0.0000153,3.521824518,0.000492987,gain,ns,-0.0000636,0.000026,-2.449907487,0.014842086,neg,ns,0.017077606,0.007605125,2.245539007,0.025437926,pos,ns,1.594518297,-0.000514342,0.00026154,-1.966593365,0.050121922,neg,ns,0.438888136,Wt1,Wt1_Exon,2,105122209,105122258,105122257,105122258,50,+,GGGGTCAGGAGTTCTAATTGTAACCTCAGACTGGAATTCCAGATGGTGCG,Promoter (4-5kb),2,105126529,105173612,47084,1,Wt1-205,-4271,Wt1-205;Wt1-207;Wt1-203;Wt1-204,Wt1;Wt1;Wt1;Wt1,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,6,22431,ENSMUSG00000016458,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
4621,cg17050836,0.0000112,0.00000407,2.738978565,0.006519686,gain,ns,-0.0000169,0.00000692,-2.449860339,0.014843992,neg,ns,-0.002996553,0.00202613,-1.47895379,0.14016806,neg,ns,0.853350936,0.0000871,0.0000697,1.249848627,0.212297584,pos,ns,0.884952898,Mecom,Mecom_threeUTR,3,29980839,29980888,29980839,29980840,50,-,CGTAGTGCTGAACATTTGTCCACAGTCTTTGCACTTGATTTGGGTTCTGC,3' UTR,3,29951296,30013156,61861,2,Mecom-206,32268,Mecom-206;Mecom-212;Mecom-202;Mecom-203;Mecom-210;Mecom-215;Mecom-204;Mecom-213;Mecom-207;Mecom-208;Mecom-205;Mecom-216,Mecom;Mecom;Mecom;Mecom;Mecom;Mecom;Mecom;Mecom;Mecom;Mecom;Mecom;Mecom,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,10,80,14013,ENSMUSG00000027684,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25700,cg12100658,-0.00000372,0.0000016,-2.324321067,0.020754221,loss,ns,0.00000666,0.00000272,2.449542708,0.014856835,pos,ns,0.001303059,0.000796428,1.636128255,0.10282757,pos,ns,0.987890428,0.00000276,0.0000274,0.100914771,0.919683353,pos,ns,0.057387522,Metap1,Metap1_Exon,3,138489261,138489310,138489261,138489262,50,-,CGAGCAGAAGTACGAGCCCTGGATGCCCAGCTTGATGCAAGTGGGACACT,Promoter (<=1kb),3,138458956,138489515,30560,2,Metap1-201,205,Metap1-201;Metap1-203;Metap1-204,Metap1;Metap1;Metap1,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,75624,ENSMUSG00000005813,conserved gene and region,3,138488909,138489274,366,*,366,49,0.770491803,0.902112676,0.133879781,2.10E-44,CpGisland,TRUE,U1,Pr-A
27137,cg09718073,-0.000014,0.00000712,-1.961059994,0.050766996,loss,ns,0.0000296,0.0000121,2.449215305,0.014870085,pos,ns,0.003023326,0.003545533,0.852714045,0.394476227,pos,ns,0.403979164,-0.0000602,0.000121931,-0.494044102,0.62162491,neg,ns,0.84253318,Dhx35,Dhx35_Intergenic_downstream,2,159108023,159108072,159108023,159108024,50,-,CGGTGACCCACAGGTACTGCGCATGGAACCTAATGACCAGTCACTCAATT,Distal Intergenic,2,158850629,158857368,6740,1,Dhx35-204,257443,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,14,14,71715,ENSMUSG00000027655,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13205,cg20710934,0.0000126,0.00000169,7.471296981,8.15E-13,gain,yes,-0.00000703,0.00000287,-2.449123013,0.014873821,neg,ns,0.002222388,0.000840998,2.642558729,0.008646046,pos,ns,2.063182464,-0.0000606,0.0000289,-2.095682491,0.036921153,neg,ns,0.067810077,Foxb1,Foxb1_fiveUTR,9,69760862,69760911,69760862,69760863,50,+,CGAACCATCTGATAGTTTTAAGCGGTGACAGGAGCAGAAAAGACCCCTGT,Promoter (<=1kb),9,69757710,69760940,3231,2,Foxb1-201,29,Foxb1-201,Foxb1,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,21,64290,ENSMUSG00000059246,conserved gene and region,9,69760569,69760991,423,*,423,38,0.643026005,0.879754803,0.089834515,2.59E-27,CpGisland,TRUE,U13,Hc-P
22697,cg22122198,-0.0000022,0.00000234,-0.937071674,0.349451145,loss,ns,-0.00000975,0.00000398,-2.449038983,0.014877224,neg,ns,-0.003169844,0.001166188,-2.718124546,0.006934758,neg,ns,2.15896872,0.0000248,0.0000401,0.618648346,0.536602349,pos,ns,0.943646072,BC052040,BC052040_Intron,2,115726979,115727028,115726979,115726980,50,+,CGAGTGGTAATAAGGACAATAGGGGCCCTGGCTAATTTGACATGGACAGC,"Intron (BC052040-203/BC052040, intron 10 of 10)",2,115581716,115778768,197053,1,BC052040-203,145263,BC052040-203;BC052040-201,BC052040;BC052040,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,37,49,399568,ENSMUSG00000040282,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14430,cg07558657,-0.00000195,0.00000541,-0.360354962,0.718827105,loss,ns,-0.0000225,0.00000919,-2.448939599,0.01488125,neg,ns,-0.001745829,0.002692666,-0.648364556,0.51722915,neg,ns,0.286317007,-0.000139555,0.0000926,-1.50706091,0.132813389,neg,ns,0.832246137,Akap13,Akap13_Exon,7,75579607,75579656,75579607,75579608,50,-,CGTATGATGCAGCTCAATTCCTAGCAACCAGTGCTGGAAATCAGCAGGCT,"Exon (Akap13-201/Akap13, exon 4 of 37)",7,75455534,75754609,299076,1,Akap13-201,124073,Akap13-201;Akap13-205;Akap13-212;Akap13-206,Akap13;Akap13;Akap13;Akap13,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,75547,ENSMUSG00000066406,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27396,cg25882973,0.00000795,0.00000655,1.213786912,0.225753034,gain,ns,-0.0000272,0.0000111,-2.4487018,0.014890886,neg,ns,-0.000443893,0.003260174,-0.136156245,0.891786139,neg,ns,0.049739282,-0.00012303,0.000112117,-1.097337544,0.273345498,neg,ns,0.944348596,Ildr2,Ildr2_Exon,1,166303504,166303553,166303504,166303505,50,-,CGCAAAGGTTACCGGATCCAGGCTGACAAAGAGAGAGACTCCATGAAGGT,"Exon (Ildr2-201/Ildr2, exon 7 of 10)",1,166254139,166316823,62685,1,Ildr2-201,49365,Ildr2-201;Ildr2-202;Ildr2-203;Ildr2-204;Ildr2-205;Ildr2-206;Ildr2-207,Ildr2;Ildr2;Ildr2;Ildr2;Ildr2;Ildr2;Ildr2,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,100039795,ENSMUSG00000040612,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11254,cg11905915,0.0000172,0.00000784,2.188612065,0.029370887,gain,ns,0.0000326,0.0000133,2.447965603,0.014920753,pos,ns,0.010316357,0.003900366,2.644971375,0.008586018,pos,ns,2.066208186,-0.000121091,0.000134133,-0.902768408,0.367349745,neg,ns,0.073861678,Gm13526,Gm13526_Intron,2,57182091,57182140,57182139,57182140,50,-,AGTGGTAGAGCGCGCGCTTCGCATGTGTGAGGTCCCGGGTTCAATCCCCG,"Intron (4930555B11Rik-201/4930555B11Rik-201, intron 1 of 3)",2,57214054,57214242,189,2,Gm13526-201,32151,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,3,100041900,NA,mapped to different genes,2,57182072,57182157,86,*,86,8,0.651162791,0.887741936,0.093023256,0.0000038,CpGisland,TRUE,U1,Pr-A
21235,cg16390944,-0.0000104,0.00000259,-4.025513,0.0000715,loss,ns,0.0000108,0.0000044,2.447950487,0.014921367,pos,ns,0.002792107,0.001288642,2.16670405,0.031018937,pos,ns,1.508373086,-0.0000787,0.0000443,-1.774954766,0.076886568,neg,ns,0.057838561,Ssbp3,Ssbp3_Promoter,4,106910326,106910375,106910374,106910375,50,+,CAGTTTCAAGGCTCCCCTAAAGATGTATCCAAACAGGCAGCCAATCAGCG,Promoter (<=1kb),4,106910701,107031069,120369,1,Ssbp3-216,-326,Ssbp3-216;Ssbp3-201;Ssbp3-215;Ssbp3-202;Ssbp3-203;Ssbp3-207;Ssbp3-213,Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3,0;0;0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,18,72475,ENSMUSG00000061887,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
476,cg25074367,-0.00000335,0.00000244,-1.374718874,0.170211468,loss,ns,-0.0000101,0.00000414,-2.447632558,0.014934282,neg,ns,-0.002812087,0.001212941,-2.318404189,0.021077703,neg,ns,1.676176722,0.0000164,0.0000417,0.393231568,0.694418748,pos,ns,0.933481955,Ogdh,Ogdh_Exon,11,6317001,6317050,6317049,6317050,50,-,GCTGGACCCCCTGGGGATTTTGGATGCTGATCTGGACTCCTCCGTGCCCG,"Exon (Ogdh-201/Ogdh, exon 4 of 23)",11,6291633,6356642,65010,1,Ogdh-201,25368,Ogdh-201;Ogdh-204;Ogdh-203;Ogdh-207;Ogdh-206;Ogdh-202,Ogdh;Ogdh;Ogdh;Ogdh;Ogdh;Ogdh,0;0;0;25016;24829;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,18293,ENSMUSG00000020456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3197,cg02105368,-0.000018,0.0000078,-2.315233967,0.021252832,loss,ns,0.0000324,0.0000132,2.447306297,0.014947546,pos,ns,0.008650026,0.003879688,2.229567364,0.026492278,pos,ns,1.576880704,-0.000352221,0.000133422,-2.639899686,0.00871264,neg,ns,0.794799615,Gm46443,Gm46443_Intergenic_upstream,14,23233326,23233375,23233326,23233327,50,-,CGCCACTGGAATCGATCCGCATCAGTTCCACCTGCATGCACCCACCAGGA,Distal Intergenic,14,23321144,23321507,364,1,Gm46443-201,-87818,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,12,12,108168141,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7532,cg06715914,-0.0000224,0.00000397,-5.630549819,4.03E-08,loss,yes,-0.0000165,0.00000674,-2.446479456,0.014981208,neg,ns,0.000595973,0.001975695,0.301652085,0.763119553,pos,ns,0.117407419,-0.000183844,0.0000679,-2.705813376,0.007190849,neg,ns,0.883939662,Fam214b,Fam214b_threeUTR,4,43033848,43033897,43033896,43033897,50,-,GGGTTAGCATTTCCCTCCTCACCCACAGGCACCAAAAAGAGGCGATGGCG,3' UTR,4,43032414,43040288,7875,2,Fam214b-204,6391,Fam214b-204;Fam214b-205;Fam214b-202;Fam214b-203;Fam214b-201;Fam214b-207;Fam214b-210;Fam214b-206;Fam214b-209;Fam214b-208;Stoml2-201;Stoml2-203;Stoml2-211;Stoml2-207;Stoml2-206;Stoml2-202;Stoml2-208;Stoml2-209;Stoml2-210;Stoml2-205;Stoml2-204,Fam214b;Fam214b;Fam214b;Fam214b;Fam214b;Fam214b;Fam214b;Fam214b;Fam214b;Fam214b;Stoml2;Stoml2;Stoml2;Stoml2;Stoml2;Stoml2;Stoml2;Stoml2;Stoml2;Stoml2;Stoml2,0;0;0;0;0;0;0;0;0;0;0;-4011;-3934;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,5,230088,ENSMUSG00000036002,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9037,cg03020858,-0.00000925,0.00000409,-2.262935805,0.02433119,loss,ns,0.000017,0.00000694,2.445962283,0.015002296,pos,ns,0.003807622,0.002034198,1.871805055,0.062175084,pos,ns,1.206383619,-0.000150866,0.00007,-2.15658957,0.031806336,neg,ns,0.929362771,Nova1,Nova1_threeUTR,12,46696309,46696358,46696357,46696358,50,-,CATTTACACATTCTTAAAGTAAACATTAATATGCACTTTCTTAGAAAGCG,3' UTR,12,46694517,46818929,124413,2,Nova1-201,122571,Nova1-201;Nova1-204,Nova1;Nova1,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,10,24,664883,ENSMUSG00000021047,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10412,cg21203153,-0.0000227,0.000015,-1.510568704,0.131916991,loss,ns,0.0000624,0.0000255,2.445482305,0.015021892,pos,ns,-0.000985613,0.007469659,-0.131948805,0.895110383,neg,ns,0.048123405,0.000357926,0.000256881,1.393353027,0.164511271,pos,ns,0.425664543,Msx2,Msx2_Intergenic_downstream,13,53463618,53463667,53463666,53463667,50,+,TGTGTGAAAAACCAAGTCTAATAAACAATTGTTAAGTTGGCCTGTTGCCG,Distal Intergenic,13,53466884,53473074,6191,2,Msx2-201,9407,Msx2-201,Msx2,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,4,17702,ENSMUSG00000021469,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
17651,cg08855449,0.000206497,0.0000119,17.4041073,8.37E-48,gain,yes,-0.0000493,0.0000202,-2.445460337,0.015022789,neg,ns,0.006055742,0.005905246,1.025485246,0.305933808,pos,ns,0.514372527,0.000257461,0.000203081,1.267776697,0.2058291,pos,ns,0.438534935,Zic4,Zic4_Intron,9,91367203,91367252,91367251,91367252,50,+,CTTTTCTAGTTCACAAATCAGTCACCCTTGTCACAGTTATTGAAATTCCG,"Intron (Zic4-208/Zic4, intron 1 of 2)",9,91362413,91378915,16503,1,Zic4-208,4790,Zic1-201;Zic1-202;Zic1-203;Zic4-208;Zic4-206;Zic4-207;Zic4-211;Zic4-204;Zic4-203;Zic4-210;Zic4-209;Zic4-212,Zic1;Zic1;Zic1;Zic4;Zic4;Zic4;Zic4;Zic4;Zic4;Zic4;Zic4;Zic4,0;0;-4149;0;0;0;0;0;0;-3752;0;-4098,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,55,22774,ENSMUSG00000036972,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
3783,cg08696221,0.0000324,0.00000656,4.936046598,0.0000013,gain,yes,-0.0000272,0.0000111,-2.444249651,0.015072319,neg,ns,0.009799963,0.003263164,3.003209105,0.002889033,pos,ns,2.539247505,-0.00012579,0.00011222,-1.120924796,0.263187462,neg,ns,0.622090841,Zmiz1,Zmiz1_Intron,14,25421785,25421834,25421833,25421834,50,-,CGATTTGTCTCTGACTGATTTCCCTGACGTCTAGTTTTCTTCTCCGCCCG,"Intron (Zmiz1os1-202/Zmiz1os1-202, intron 2 of 3)",14,25459185,25538492,79308,1,Zmiz1-206,-37400,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,15,328365,ENSMUSG00000007817,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1732,cg10818013,0.0000287,0.00000563,5.103635935,0.000000582,gain,yes,0.0000234,0.00000956,2.444228803,0.015073174,pos,ns,0.009061666,0.002799939,3.236379889,0.001341496,pos,ns,2.87241077,-0.0000695,0.0000963,-0.721285995,0.471277195,neg,ns,0.109805528,Gm5513,Gm5513_Intergenic_downstream,19,14890907,14890956,14890955,14890956,50,-,GGTGTTCAATGAAGTGTGAGACTTTTAGTTCAGTCTCGCTGAGCCGGCCG,Distal Intergenic,19,14959549,14960766,1218,2,Gm5513-201,69859,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,22,433225,NA,mapped to different genes,19,14890943,14890964,22,*,22,5,0.863636364,1.25,0.227272727,0.00000782,CpGisland,TRUE,U13,Hc-P
13893,cg12070096,0.0000317,0.0000103,3.090968709,0.002176147,gain,ns,0.0000426,0.0000174,2.444214732,0.01507375,pos,ns,0.004117301,0.005103949,0.806689415,0.420463887,pos,ns,0.376271299,0.000343825,0.000175524,1.958843161,0.051027385,pos,ns,0.130662519,Irx4,Irx4_Intergenic_downstream,13,73270975,73271024,73271023,73271024,50,-,GTGAAATTTTCATTTTGACAGTAAACCCCTCAATTTCTAAAGGCTCCGCG,Downstream (1-2kb),13,73260497,73269608,9112,1,Irx4-201,10527,Irx4-202;Irx4-201,Irx4;Irx4,0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,6,7,50916,ENSMUSG00000021604,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
22204,cg07993076,-0.00000326,0.00000322,-1.014046251,0.311351475,loss,ns,0.0000134,0.00000547,2.443869481,0.015087902,pos,ns,0.004675546,0.001601312,2.919821982,0.003758998,pos,ns,2.424927877,-0.000134829,0.0000551,-2.448361461,0.014904687,neg,ns,0.936414327,Spata6,Spata6_Exon,4,111768767,111768816,111768767,111768768,50,+,CGGGTCCAAACCAAATGTCTGGACACCATGATTCAAACCGCCAGGTTACC,"Exon (Spata6-201/Spata6, exon 5 of 13)",4,111719984,111829142,109159,1,Spata6-201,48783,Spata6-201;Spata6-202;Spata6-204;Spata6-213;Spata6-210;Spata6-214;Spata6-208;Spata6-205;Spata6-203,Spata6;Spata6;Spata6;Spata6;Spata6;Spata6;Spata6;Spata6;Spata6,0;48758;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,5,67946,ENSMUSG00000034401,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4676,cg06310285,-0.000000201,0.000002,-0.100337465,0.920141273,loss,ns,-0.00000832,0.0000034,-2.443271393,0.015112446,neg,ns,-0.001539404,0.000997448,-1.543342542,0.123767859,neg,ns,0.90739212,0.0000138,0.0000343,0.402050546,0.687923886,pos,ns,0.954939464,Cacna1d,Cacna1d_Exon,14,30089863,30089912,30089863,30089864,50,-,CGATGAGGGAGTCAAACGTGTTCCAGGCGTCACTAAAATACCCCTGGACA,"Exon (Cacna1d-202/Cacna1d, exon 30 of 47)",14,30039941,30491453,451513,2,Cacna1d-202,401541,Cacna1d-202;Cacna1d-201;Cacna1d-208;Cacna1d-209;Cacna1d-214;Cacna1d-204;Cacna1d-207;Cacna1d-218;Cacna1d-216;Cacna1d-217;Cacna1d-210;Cacna1d-219,Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,26,12289,ENSMUSG00000015968,conserved gene and region,14,30089796,30089891,96,*,96,9,0.572916667,1.145888594,0.09375,0.000000648,CpGisland,TRUE,U11,Tr-P
19442,cg23190295,0.0000084,0.00000552,1.520621314,0.129374183,gain,ns,-0.0000229,0.00000938,-2.443230514,0.015114125,neg,ns,0.019054782,0.002748823,6.931979782,2.41E-11,pos,yes,10.61718323,-0.000376706,0.0000945,-3.98496511,0.0000842,neg,ns,0.792966798,Prpf40b,Prpf40b_Exon,15,99315206,99315255,99315254,99315255,50,+,GTGTGTGACTCAGCCTTTGAGCAGATCACCCTGGAGTCGGAGCGGATCCG,"Exon (Prpf40b-214/Prpf40b, exon 19 of 24)",15,99295239,99317018,21780,1,Prpf40b-214,19967,Fmnl3-201;Fmnl3-203;Fmnl3-202;Prpf40b-214;Prpf40b-206;Prpf40b-209;Prpf40b-212;Prpf40b-208;Prpf40b-201;Prpf40b-202;Prpf40b-210;Prpf40b-215;Prpf40b-203;Prpf40b-207;Prpf40b-213;Prpf40b-204,Fmnl3;Fmnl3;Fmnl3;Prpf40b;Prpf40b;Prpf40b;Prpf40b;Prpf40b;Prpf40b;Prpf40b;Prpf40b;Prpf40b;Prpf40b;Prpf40b;Prpf40b;Prpf40b,55194;55194;55227;0;0;0;0;0;0;0;0;0;0;0;0;-285,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,10,54614,ENSMUSG00000023007,conserved gene but different region,15,99315183,99315264,82,*,82,8,0.609756098,1.051282051,0.097560976,0.00000265,CpGisland,TRUE,NA,NRS
12231,cg17469239,0.0000207,0.00000341,6.073998089,3.65E-09,gain,yes,-0.0000142,0.0000058,-2.443137381,0.015117951,neg,ns,0.003631444,0.001699305,2.137016911,0.033379035,pos,ns,1.476526217,-0.0000658,0.0000584,-1.12635407,0.260886851,neg,ns,0.932289683,Ptch1,Ptch1_Intron,13,63554662,63554711,63554662,63554663,50,-,CGGCCCTGACCTGCAGCTGGAACACAATACTTTCGCACAGCCCTGCCGAC,"Intron (Ptch1-201/Ptch1, intron 2 of 22)",13,63508328,63565735,57408,2,Ptch1-201,11024,Ptch1-201;Ptch1-204;Ptch1-206;Ptch1-202;Ptch1-207;Ptch1-203;Ptch1-205,Ptch1;Ptch1;Ptch1;Ptch1;Ptch1;Ptch1;Ptch1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,36,19206,ENSMUSG00000021466,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8463,cg25530799,0.00000222,0.0000131,0.169884896,0.865211471,gain,ns,-0.0000543,0.0000222,-2.443084875,0.015120108,neg,ns,-0.010028925,0.00650589,-1.541514681,0.124211706,neg,ns,0.905837472,0.0000772,0.000223737,0.344985316,0.730339357,pos,ns,0.508567238,Zeb2,Zeb2_Intergenic_upstream,2,45205900,45205949,45205900,45205901,50,-,CGTTACTTTTTGTGTGGCATGTGAAAAGAAAATCCTGAAAACACATGTTT,Distal Intergenic,2,44983632,45117395,133764,2,Zeb2-212,-88554,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,9,158,24136,ENSMUSG00000026872,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5100,cg14723090,-0.0000658,0.0000103,-6.41686634,5.20E-10,loss,yes,0.0000426,0.0000174,2.443082838,0.015120192,pos,ns,-0.002367998,0.005105378,-0.463824289,0.643099154,neg,ns,0.191722062,-0.0000711,0.000175574,-0.405108089,0.685677474,neg,ns,0.629373846,Dnm1,Dnm1_Intron,2,32318061,32318110,32318109,32318110,50,+,ACATAAAGCCCTCTTTATGCCAGGCGGGTGGCCGGGAGCCCCAGAGGGCG,"Intron (Dnm1-204/Dnm1, intron 15 of 21)",2,32308471,32353263,44793,2,Dnm1-204,35153,Dnm1-204;Dnm1-209;Dnm1-202;Dnm1-201;Dnm1-203;Dnm1-205;Dnm1-214;Dnm1-206;Dnm1-216;Dnm1-217;Dnm1-213;Dnm1-210,Dnm1;Dnm1;Dnm1;Dnm1;Dnm1;Dnm1;Dnm1;Dnm1;Dnm1;Dnm1;Dnm1;Dnm1,0;0;0;0;0;0;0;0;0;0;-730;-4984,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,16,13429,ENSMUSG00000026825,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
18671,cg22598041,-0.0000254,0.0000656,-0.388206188,0.698129908,loss,ns,-0.000271998,0.000111363,-2.442449073,0.01514625,neg,ns,-0.009722871,0.032625549,-0.298014015,0.765892101,neg,ns,0.11583241,-0.000465491,0.00112199,-0.414879409,0.678517153,neg,ns,0.673482767,Skap1,Skap1_Intron,11,96655849,96655898,96655849,96655850,50,+,CGATGTCTGAACAAGCTATTGAAACTGTAGCAATCAAGTGGACTCTGGTT,"Intron (Skap1-204/Skap1, intron 4 of 12)",11,96464593,96758941,294349,1,Skap1-204,191256,Skap1-204;Skap1-203;Skap1-209;Skap1-201;Skap1-206;Skap1-208,Skap1;Skap1;Skap1;Skap1;Skap1;Skap1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,40,46,78473,ENSMUSG00000057058,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11717,cg04084909,-0.00000947,0.00000582,-1.627826693,0.104577518,loss,ns,-0.0000241,0.00000989,-2.44242477,0.01514725,neg,ns,-0.004438704,0.002896632,-1.532367101,0.126451726,neg,ns,0.89807524,0.0000871,0.0000996,0.873970046,0.382811102,pos,ns,0.882978301,Fam204a,Fam204a_Intron,19,60204460,60204509,60204508,60204509,50,-,CGGGTGACAGCTCCTCATTTTGAGGCTTGAACAAAATTAGCAAAAAGTCG,"Intron (Fam204a-201/Fam204a, intron 6 of 7)",19,60198586,60226697,28112,2,Fam204a-201,22188,Fam204a-201;Fam204a-203;Fam204a-202;Fam204a-206;Fam204a-205;Fam204a-207,Fam204a;Fam204a;Fam204a;Fam204a;Fam204a;Fam204a,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,14,76539,ENSMUSG00000057858,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25183,cg27252359,-0.00000627,0.0000042,-1.494838225,0.135973894,loss,ns,0.0000174,0.00000713,2.441950631,0.015166772,pos,ns,0.001398465,0.002088987,0.669446722,0.50370884,pos,ns,0.297820427,-0.0000765,0.0000718,-1.064424242,0.287964942,neg,ns,0.91946502,Tex36,Tex36_Intergenic_downstream,7,133500293,133500342,133500341,133500342,50,+,ATGACAGTTATTTCTATTAATGGGTGGGCCCTGTCAGTTTCCTGACCCCG,Distal Intergenic,7,133587024,133602158,15135,2,Tex36-201,101816,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,73808,ENSMUSG00000030976,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25622,cg21335435,-0.0000641,0.0000144,-4.460029521,0.0000115,loss,ns,-0.0000596,0.0000244,-2.441495241,0.015185544,neg,ns,-0.017692014,0.007155765,-2.472413883,0.013956775,neg,ns,1.85521492,0.000258064,0.000246086,1.0486751,0.295144559,pos,ns,0.560285312,Jag1,Jag1_Intergenic_upstream,2,137514309,137514358,137514357,137514358,50,-,GCTGGTCTTATCCAATTTTCCAGCTGGGAGCATGAGGCACAGGGAGGTCG,Distal Intergenic,2,137081456,137116644,35189,2,Jag1-201,-397714,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,16,16449,ENSMUSG00000027276,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13762,cg03582645,0.0000506,0.00000804,6.293881409,1.06E-09,gain,yes,-0.0000334,0.0000137,-2.441489807,0.015185768,neg,ns,-0.012366014,0.004001911,-3.090027545,0.002182845,neg,ns,2.66097711,0.000529521,0.000137625,3.847552321,0.000144862,pos,ns,0.825940179,Map3k20,Map3k20_Intron,2,72426779,72426828,72426827,72426828,50,-,CAGCACAGTTGTGGGGACTGAAATGAGCCCACTAATTGCCTCCCATTTCG,"Intron (Map3k20-201/Map3k20, intron 16 of 19)",2,72285637,72442610,156974,1,Map3k20-201,141142,Map3k20-201,Map3k20,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,14,18,65964,ENSMUSG00000004085,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18242,cg03381725,0.0000786,0.00000726,10.81903133,2.34E-23,gain,yes,-0.0000301,0.0000123,-2.440648806,0.015220489,neg,ns,-0.003708686,0.003615344,-1.025818231,0.305777049,neg,ns,0.514595116,0.00021117,0.000124331,1.698443552,0.090427454,pos,ns,0.349112319,Ap3b1,Ap3b1_Intergenic_downstream,13,94595732,94595781,94595780,94595781,50,+,TTGAAGCCTCAATTAATTAACCCTTGGGCTAAGTAGGCAGGTACATGGCG,Distal Intergenic,13,94542303,94547867,5565,1,Ap3b1-202,53429,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,33,55,11774,ENSMUSG00000021686,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
23318,cg08350690,0.00000699,0.0000126,0.554724658,0.579483009,gain,ns,0.0000523,0.0000214,2.440612214,0.015222001,pos,ns,0.013801846,0.006272756,2.200284356,0.028524143,pos,ns,1.54478739,-0.000100318,0.00021572,-0.465040263,0.642229109,neg,ns,0.839059207,Cdca7l,Cdca7l_Intron,12,117806185,117806234,117806185,117806186,50,-,CGATTACTCACACGTTGCACACGGTATCATTTGCTTGTCACTTAATGACT,"Intron (Cdca7l-202/Cdca7l, intron 1 of 4)",12,117804289,117870047,65759,1,Cdca7l-202,1896,Cdca7l-202,Cdca7l,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,7,217946,ENSMUSG00000021175,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23262,cg10826838,0.00000628,0.00000289,2.171416507,0.030657857,gain,ns,-0.000012,0.00000491,-2.43971422,0.015259156,neg,ns,-0.000907803,0.001439052,-0.630833918,0.528613921,neg,ns,0.276861404,0.0000828,0.0000495,1.67361517,0.095214926,pos,ns,0.93626715,Eri3,Eri3_Exon,4,117637337,117637386,117637337,117637338,50,+,CGGCCTGCGTGAGCTTGATAAATGGGGAGCACTCCAGACTGACTCGCGCC,Promoter (<=1kb),4,117637338,117674281,36944,1,Eri3-203,0,Eri3-201;Eri3-206;Eri3-203,Eri3;Eri3;Eri3,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,97,140546,ENSMUSG00000033423,conserved gene but different region,4,117637294,117637471,178,*,178,15,0.634831461,0.841740227,0.084269663,1.21E-10,CpGisland,TRUE,U11,Tr-P
14386,cg23400593,-0.0000284,0.0000152,-1.869228958,0.062533683,loss,ns,0.000063,0.0000258,2.439588698,0.015264355,pos,ns,0.008045824,0.007564007,1.063698563,0.288293136,pos,ns,0.540165698,-0.000470751,0.000260126,-1.809704988,0.07130993,neg,ns,0.21593726,Ctif,Ctif_Intron,18,75441969,75442018,75441969,75441970,50,+,CGAGCCCACACAGTGTTTGTTCGGAAGCGAATGCATTCCTGTCCTATTGT,"Intron (Ctif-201/Ctif, intron 10 of 11)",18,75431224,75697554,266331,2,Ctif-201,255536,Ctif-201,Ctif,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,4,269037,ENSMUSG00000052928,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5774,cg02146878,-0.0000096,0.00000578,-1.660142824,0.097896863,loss,ns,0.000024,0.00000982,2.439142726,0.015282843,pos,ns,0.019618732,0.002877076,6.818982143,4.80E-11,pos,yes,10.31849984,-0.000473404,0.0000989,-4.784642084,0.00000265,neg,ns,0.859448583,Wapl,Wapl_Exon,14,34692063,34692112,34692111,34692112,50,-,GTGTTCTTAGGCCAACCAACTGTAGGACGTACTGTAGGGCCAATAAAACG,"Exon (Wapl-201/Wapl, exon 3 of 19)",14,34673928,34747983,74056,1,Wapl-201,18135,Wapl-201;Wapl-205;Wapl-202;Wapl-203,Wapl;Wapl;Wapl;Wapl,0;0;0;-2225,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,6,218914,ENSMUSG00000041408,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15995,cg12262201,0.0000532,0.00000876,6.078655815,3.56E-09,gain,yes,-0.0000363,0.0000149,-2.438548139,0.015307522,neg,ns,0.001216293,0.004357759,0.279109769,0.780346697,pos,ns,0.107712404,-0.000127504,0.000149863,-0.850806458,0.395533558,neg,ns,0.743663527,Gm12416,Gm12416_Intergenic_downstream,4,84108315,84108364,84108315,84108316,50,+,CGGATTTGTAGCACACCTGCATTGGAGGTAAATCGATTGGCGCTTCTTAA,Distal Intergenic,4,84104895,84105902,1008,1,Gm12416-201,3420,Gm12416-201,Gm12416,3420,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,11,668010,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5642,cg23413592,-0.00000304,0.00000384,-0.793090174,0.42833186,loss,ns,0.0000159,0.00000652,2.438434351,0.015312249,pos,ns,0.005634474,0.00191052,2.94918414,0.003428537,pos,ns,2.464891145,-0.000171319,0.0000657,-2.607498305,0.009561918,neg,ns,0.920022026,Mapkap1,Mapkap1_Intron,2,34455787,34455836,34455835,34455836,50,-,ATGAATAATTTTTGTCAGTTTTGCTACCCCGGCAGATCCTTCATTAAGCG,"Intron (Mapkap1-210/Mapkap1, intron 4 of 4)",2,34406771,34497716,90946,1,Mapkap1-210,49016,Mapkap1-210;Mapkap1-204;Mapkap1-211;Mapkap1-202;Mapkap1-201;Mapkap1-209;Mapkap1-203;Mapkap1-207;Mapkap1-206,Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,59,227743,ENSMUSG00000038696,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4736,cg09626366,0.00000753,0.00000498,1.513837343,0.131085953,gain,ns,-0.0000206,0.00000845,-2.438058996,0.015327851,neg,ns,0.00237344,0.002476965,0.95820492,0.338706135,pos,ns,0.470176937,-0.0000345,0.0000852,-0.404760573,0.685932657,neg,ns,0.890459971,Cacna1d,Cacna1d_Exon,14,30350726,30350775,30350726,30350727,50,-,CGAGTTACCCTGTTTTTTGCTCTTGGCGTATTGCTGACGTTTTCTTTGGG,"Exon (Cacna1d-202/Cacna1d, exon 2 of 47)",14,30039941,30491453,451513,2,Cacna1d-202,140678,Cacna1d-202;Cacna1d-201;Cacna1d-208;Cacna1d-209;Cacna1d-214;Cacna1d-204;Cacna1d-207;Cacna1d-218;Cacna1d-216;Cacna1d-205,Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,26,12289,ENSMUSG00000015968,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26652,cg26216002,-0.0000157,0.0000307,-0.512291369,0.608811891,loss,ns,-0.000127125,0.0000521,-2.437975426,0.015331326,neg,ns,-0.043644121,0.015276381,-2.856967334,0.004566217,neg,ns,2.340443501,0.00000511,0.000525353,0.009719067,0.99225168,pos,ns,0.1633687,Ube4b,Ube4b_fiveUTR,4,149426565,149426614,149426565,149426566,50,+,CGCCCCACCAAGTATTATTCATCAAAACAACAGGGCGGCCATCTTTGAAA,Promoter (<=1kb),4,149385126,149426600,41475,2,Ube4b-209,0,Ube4b-202;Ube4b-213;Ube4b-214;Ube4b-210;Ube4b-212;Ube4b-201;Ube4b-209;Ube4b-211,Ube4b;Ube4b;Ube4b;Ube4b;Ube4b;Ube4b;Ube4b;Ube4b,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,4,63958,ENSMUSG00000028960,conserved gene and region,4,149426063,149426863,801,*,801,73,0.695380774,0.758404669,0.09113608,2.27E-52,CpGisland,TRUE,U1,Pr-A
10677,cg09966494,0.0000118,0.0000024,4.89399894,0.00000159,gain,yes,-0.00000995,0.00000408,-2.437947156,0.015332502,neg,ns,0.000783518,0.001195627,0.655319893,0.512747811,pos,ns,0.290096185,0.0000151,0.0000411,0.36752392,0.713479037,pos,ns,0.059034639,Zfp462,Zfp462_fiveUTR,4,54948098,54948147,54948098,54948099,50,+,CGGCAGAAGCACATGAGACTCCCAAACAACTTCCACAACAATAACCCGAG,5' UTR,4,54945048,55008314,63267,1,Zfp462-204,3050,Zfp462-204;Zfp462-203,Zfp462;Zfp462,0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,23,242466,ENSMUSG00000060206,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
18181,cg23713843,0.0000306,0.00000661,4.624805529,0.00000551,gain,ns,-0.0000274,0.0000112,-2.437778286,0.015339528,neg,ns,-0.008993508,0.003291097,-2.732678258,0.006642654,neg,ns,2.177658372,0.0000957,0.000113181,0.845756991,0.398340657,pos,ns,0.881821182,Cacna1g,Cacna1g_threeUTR,11,94408838,94408887,94408886,94408887,50,+,TAGAGATTCTGCACAAACGTATTGCTTTCTCCCAACAGCTTCTGGTGTCG,3' UTR,11,94408391,94474100,65710,2,Cacna1g-202,65213,Cacna1g-202;Cacna1g-203;Cacna1g-205;Cacna1g-206;Cacna1g-207;Cacna1g-208;Cacna1g-209;Cacna1g-210;Cacna1g-211;Cacna1g-201;Cacna1g-204;Cacna1g-213;Cacna1g-215,Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g,0;0;0;0;0;0;0;0;0;0;0;2792;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,18,12291,ENSMUSG00000020866,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5188,cg22964141,0.00000112,0.00000209,0.53514745,0.592931564,gain,ns,-0.00000866,0.00000355,-2.437508642,0.015350752,neg,ns,-0.001924065,0.001041439,-1.847506065,0.06562643,neg,ns,1.182921218,0.0000263,0.0000358,0.733141547,0.464026127,pos,ns,0.925587536,Fbxw11,Fbxw11_Exon,11,32652701,32652750,32652701,32652702,50,-,CGCTGGTGCCATGGTGGGTGTATGGATTGCTTTCTGTCTTTCAACAGTTA,"Exon (Fbxw11-204/Fbxw11, exon 2 of 2)",11,32642724,32746569,103846,1,Fbxw11-203,9977,Fbxw11-203;Fbxw11-204;Fbxw11-202;Fbxw11-201;Fbxw11-205,Fbxw11;Fbxw11;Fbxw11;Fbxw11;Fbxw11,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,4,103583,ENSMUSG00000020271,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
6480,cg08888591,-0.0000262,0.0000076,-3.452612065,0.000632347,loss,ns,-0.0000315,0.0000129,-2.437380104,0.015356105,neg,ns,0.004745383,0.003782575,1.254537545,0.210591733,pos,ns,0.676558681,-0.000253432,0.000130082,-1.948238946,0.052288552,neg,ns,0.890616259,Inpp4a,Inpp4a_Exon,1,37408193,37408242,37408241,37408242,50,+,GCAGCTGAAGGCTTTCCCCAAGCATTACAGGCCTCCCGAAGGGACTTACG,"Exon (Inpp4a-201/Inpp4a, exon 26 of 26)",1,37299891,37410736,110846,1,Inpp4a-201,108302,Inpp4a-201;Inpp4a-205;Inpp4a-207;Inpp4a-206;Inpp4a-213;Inpp4a-208;Inpp4a-202;Inpp4a-203;Inpp4a-211,Inpp4a;Inpp4a;Inpp4a;Inpp4a;Inpp4a;Inpp4a;Inpp4a;Inpp4a;Inpp4a,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,9,269180,ENSMUSG00000026113,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20947,cg16927935,0.000107404,0.0000192,5.593120527,0.000000049,gain,yes,-0.0000795,0.0000326,-2.436746834,0.015382503,neg,ns,0.093515895,0.009557463,9.784593569,7.05E-20,pos,yes,19.15197094,-0.002329017,0.00032868,-7.085962974,9.34E-12,neg,yes,0.782832638,Elp4,Elp4_Intron,2,105787791,105787840,105787791,105787792,50,-,CGGACCTAAGCTGGCCTCCAAACCTTGCCCTGCTGATGCCTCAAGCTCTT,"Intron (Elp4-202/Elp4, intron 9 of 9)",2,105701027,105904564,203538,2,Elp4-202,116724,Elp4-202;Elp4-201;Elp4-204,Elp4;Elp4;Elp4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,16,77766,ENSMUSG00000027167,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1192,cg04852067,0.0000516,0.00000894,5.769884917,1.92E-08,gain,yes,-0.000037,0.0000152,-2.436716857,0.015383753,neg,ns,-0.003017159,0.00444809,-0.678304397,0.498084717,neg,ns,0.302696783,0.000183396,0.000152969,1.198908778,0.231479063,pos,ns,0.661233762,Gm14512,Gm14512_Intergenic_downstream,X,12007923,12007972,12007923,12007924,50,-,CGTGTTGTTTTATAGATGCGTATTTACTTAAAGAAATCAACTGCATGTAT,Distal Intergenic,20,11984468,11984697,230,1,Gm14512-201,23504,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,22,22,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10324,cg05638305,0.00000998,0.00000315,3.169743485,0.001678133,gain,ns,-0.000013,0.00000535,-2.436588833,0.015389095,neg,ns,0.008488744,0.001567011,5.417156349,0.000000122,pos,ns,6.914655143,-0.000239393,0.0000539,-4.442294592,0.0000124,neg,ns,0.918417446,Abca1,Abca1_threeUTR,4,53033445,53033494,53033493,53033494,50,-,TGGCACTAATAACTCTGGCACACTCATTGCCAGCAATGGATGTGTCACCG,3' UTR,4,53030787,53159895,129109,2,Abca1-201,126401,Abca1-201;Abca1-202,Abca1;Abca1,0;7432,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,7,11303,ENSMUSG00000015243,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25733,cg27389123,-0.0000215,0.0000099,-2.176527384,0.030270354,loss,ns,0.000041,0.0000168,2.436373416,0.015398087,pos,ns,0.005055758,0.004925433,1.026459508,0.305475305,pos,ns,0.515023894,-0.00044133,0.000169385,-2.605481725,0.009617149,neg,ns,0.487259428,Gm9038,Gm9038_Intergenic_upstream,6,138872781,138872830,138872829,138872830,50,+,TAATTTGCCTAATCATTTTCCTAATAAGCTCCCACCATTAATTATGCACG,Distal Intergenic,6,138859521,138860124,604,2,Gm9038-201,-12657,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,5,668196,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10510,cg06806288,-0.0000107,0.00000566,-1.885209015,0.060336705,loss,ns,0.0000234,0.00000962,2.436348396,0.015399132,pos,ns,0.00970935,0.002819119,3.444107484,0.000651812,pos,ns,3.185877978,-0.000272312,0.0000969,-2.808812953,0.005288104,neg,ns,0.867271091,Elmod1,Elmod1_Intron,9,53933394,53933443,53933394,53933395,50,-,CGAACATTGCCAAATGCATTTTAATACTTCCAAGATGAGAGGAATAAATT,"Intron (Elmod1-204/Elmod1, intron 5 of 8)",9,53911457,53975126,63670,2,Elmod1-204,41683,Elmod1-204;Elmod1-202;Elmod1-201,Elmod1;Elmod1;Elmod1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,270162,ENSMUSG00000041986,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15541,cg17224156,-0.00000605,0.00000187,-3.234904694,0.001348216,loss,ns,0.00000774,0.00000318,2.436204415,0.015405145,pos,ns,0.001789042,0.000930437,1.922797844,0.055421415,pos,ns,1.256322392,-0.0000693,0.000032,-2.164481966,0.031190468,neg,ns,0.950473359,Gm50297,Gm50297_Intergenic_downstream,18,81681853,81681902,81681853,81681854,50,+,CGGCATGATGGTCCTAATTAATAATGATTACTCCCAAAATGTGCAAATGG,Distal Intergenic,18,82261062,82261262,201,2,Gm50297-201,579360,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,17,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11361,cg21684650,-0.000103915,0.00000916,-11.34803452,3.40E-25,loss,yes,-0.0000379,0.0000156,-2.435517375,0.015433866,neg,ns,0.018399871,0.004557566,4.037214184,0.0000682,pos,ns,4.16608484,-0.001445168,0.000156734,-9.220495029,4.68E-18,neg,yes,0.845224013,Clk3,Clk3_Exon,9,57758869,57758918,57758917,57758918,50,-,TTCATAAGGCACACAGCATATATAACGATAGGGATATTGCAAGGGACACG,"Exon (Clk3-207/Clk3, exon 3 of 12)",9,57750624,57765103,14480,2,Clk3-207,6185,Clk3-207;Clk3-201;Clk3-205;Clk3-203;Clk3-206;Clk3-209;Clk3-208;Clk3-204,Clk3;Clk3;Clk3;Clk3;Clk3;Clk3;Clk3;Clk3,0;0;0;0;-3548;0;5390;5935,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,14,102414,ENSMUSG00000032316,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
9338,cg00597234,0.0000279,0.00001,2.787132869,0.005645731,gain,ns,0.0000415,0.000017,2.435379002,0.015439656,pos,ns,0.008202056,0.004986764,1.644765152,0.101031855,pos,ns,0.995541672,-0.000263519,0.000171494,-1.536601508,0.125410924,neg,ns,0.829816027,Tenm3,Tenm3_Exon,8,48228973,48229022,48229021,48229022,50,-,CCACCTTGATGCAGTCCTCGTTGGCGATGTTGAGCACGTTGGTCTGCACG,"Exon (Tenm3-201/Tenm3, exon 29 of 29)",8,48227682,48674690,447009,2,Tenm3-201,445668,Tenm3-201;Tenm3-206,Tenm3;Tenm3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,39,23965,ENSMUSG00000031561,conserved gene and region,8,48228922,48229133,212,*,212,21,0.632075472,0.99197861,0.099056604,3.13E-16,CpGisland,TRUE,U10,Tr-S
25654,cg23853633,-0.0000429,0.00000861,-4.976701436,0.00000108,loss,yes,0.0000356,0.0000146,2.435143261,0.015449526,pos,ns,-0.005325021,0.004285828,-1.242472036,0.21500149,neg,ns,0.66755853,0.000242568,0.000147389,1.645763954,0.100825822,pos,ns,0.629860097,1110002E22Rik,1110002E22Rik_Exon,3,138066597,138066646,138066597,138066598,50,-,CGGGCTATAAATGAGCCTAGCAACGTGCGTGCAAAGCAAAACATTATTTA,"Exon (1110002E22Rik-201/1110002E22Rik, exon 1 of 2)",3,138065052,138081506,16455,1,1110002E22Rik-201,1545,1110002E22Rik-201;1110002E22Rik-202;Gm5105-201,1110002E22Rik;1110002E22Rik;Gm5105,0;-4951;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,7,102634333,ENSMUSG00000090066,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14762,cg09286326,-0.00000666,0.00000845,-0.788768815,0.430849934,loss,ns,0.0000349,0.0000144,2.434776199,0.015464904,pos,ns,0.012337585,0.004205112,2.933949063,0.003596532,pos,ns,2.444116017,-0.000299632,0.000144613,-2.0719533,0.039096411,neg,ns,0.881638779,Taok1,Taok1_Exon,11,77563689,77563738,77563689,77563690,50,+,CGATCTTGAGGGATTTTCTGGAGGCAAGAATCTACAAAGTTGCGAAAATA,"Exon (Taok1-201/Taok1, exon 9 of 19)",11,77529162,77585506,56345,2,Taok1-201,21768,Taok1-201;Taok1-202,Taok1;Taok1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,216965,ENSMUSG00000017291,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15495,cg13158365,0.0000162,0.00000651,2.489405251,0.013319763,gain,ns,0.0000269,0.0000111,2.434531577,0.01547516,pos,ns,0.005232819,0.003238746,1.6156931,0.107177905,pos,ns,0.969894735,0.0000187,0.00011138,0.167883182,0.866784652,pos,ns,0.694462369,Matk,Matk_threeUTR,10,81261482,81261531,81261530,81261531,50,+,TGAAGAATATCAAGTGTGATGTGACAGCCCAGGCCTTCCTGGACGAGACG,3' UTR,10,81252935,81262985,10051,1,Matk-203,8547,Matk-203;Matk-202;Matk-201;Matk-207;Matk-205;Matk-210;Matk-206;Matk-208;Matk-204;Matk-211;Matk-209;Mrpl54-201;Mrpl54-202,Matk;Matk;Matk;Matk;Matk;Matk;Matk;Matk;Matk;Matk;Matk;Mrpl54;Mrpl54,0;0;0;0;0;0;4034;3652;0;0;0;5403;5393,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,17179,ENSMUSG00000004933,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16709,cg12212620,0.0000155,0.0000164,0.94509041,0.345348751,gain,ns,0.0000678,0.0000279,2.434509681,0.015476078,pos,ns,0.012768101,0.008160329,1.564655171,0.118683997,pos,ns,0.925607838,-0.000129122,0.000280633,-0.460109322,0.645760301,neg,ns,0.40069561,Gpatch2l,Gpatch2l_Intergenic_upstream,12,86214483,86214532,86214531,86214532,50,+,AGAGAATTACTTAACCCTGACCCGTGTATTAGGGGCCTGTATTAATGCCG,Distal Intergenic,12,86241858,86291784,49927,1,Gpatch2l-204,-27326,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,13,17,70373,ENSMUSG00000021254,conserved gene but different region,12,86214265,86214574,310,*,310,23,0.54516129,1.024719747,0.074193548,7.83E-15,CpGisland,TRUE,U13,Hc-P
25921,cg14305407,-0.00000437,0.0000104,-0.419045764,0.675472892,loss,ns,-0.0000431,0.0000177,-2.434474761,0.015477542,neg,ns,-0.015643434,0.005186814,-3.016000676,0.002773259,neg,ns,2.557009533,0.000243842,0.000178374,1.367026764,0.17260739,pos,ns,0.790106786,Amz1,Amz1_threeUTR,5,140760898,140760947,140760898,140760899,50,-,CGCCTGTCCTCCATGAGGACCTGGTCGTACTCGCTGGAGGAGACCATGAA,3' UTR,5,140749283,140761439,12157,1,Amz1-206,11615,Amz1-206;Gna12-201;Gna12-202,Amz1;Gna12;Gna12,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,4,231842,ENSMUSG00000050022,conserved gene but different region,5,140760830,140761062,233,*,233,13,0.52360515,0.814247312,0.055793991,0.000000389,CpGisland,TRUE,U10,Tr-S
14949,cg16692317,0.0000499,0.00000323,15.44174265,2.69E-40,gain,yes,-0.0000134,0.00000548,-2.434474666,0.015477546,neg,ns,0.004061061,0.001606911,2.527247366,0.011993012,pos,ns,1.921071743,0.0000226,0.0000553,0.409108122,0.682742817,pos,ns,0.107096388,Pax3,Pax3_Promoter,1,78197143,78197192,78197191,78197192,50,+,TAGTTCTTTTACCCAAAGCTTGGTCAGGAGCCCTGAGCTGCGATTGGCCG,Promoter (<=1kb),1,78101270,78197134,95865,2,Pax3-202,-9,Pax3-201;Pax3-202;Pax3-203,Pax3;Pax3;Pax3,0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,17,18505,ENSMUSG00000004872,mapped to different genes,1,78197183,78197287,105,*,105,10,0.647619048,0.911458333,0.095238095,0.000000101,CpGisland,TRUE,U3,Pr-B
25962,cg03415923,0.00000388,0.000005,0.775771458,0.438475357,gain,ns,-0.0000207,0.0000085,-2.434454174,0.015478406,neg,ns,-0.00743055,0.002490768,-2.983236192,0.003078694,neg,ns,2.511633501,0.000126684,0.0000857,1.478957287,0.140167126,pos,ns,0.841235179,Macrod2,Macrod2_Intron,2,141879880,141879929,141879928,141879929,50,+,CCCCTAAACTTCCTTATGCCCAGATTTTTTCCAGATGGTTTCTCATGTCG,"Intron (Macrod2-207/Macrod2, intron 8 of 16)",2,140395309,142392966,1997658,1,Macrod2-207,1484571,Macrod2-207;Macrod2-206;Macrod2-202;Macrod2-210,Macrod2;Macrod2;Macrod2;Macrod2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,5,72899,ENSMUSG00000068205,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26827,cg00156769,0.000000704,0.00000211,0.333781003,0.738770487,gain,ns,0.00000873,0.00000358,2.434405269,0.015480457,pos,ns,0.003091374,0.001050218,2.94355475,0.003489757,pos,ns,2.457204779,-0.0000574,0.0000361,-1.588241029,0.113251214,neg,ns,0.951920622,Smg7,Smg7_Exon,1,152858902,152858951,152858950,152858951,50,-,CTCGAAGAGGGCTCAACTTTTCCAAGCTCTTACTCAGGTACACATGACCG,"Exon (Smg7-202/Smg7, exon 8 of 22)",1,152836995,152902622,65628,2,Smg7-202,43671,Smg7-202;Smg7-201;Smg7-203;Smg7-204,Smg7;Smg7;Smg7;Smg7,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,7,226517,ENSMUSG00000042772,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10845,cg05221286,0.0000563,0.0000109,5.147954245,0.000000469,gain,yes,-0.0000452,0.0000186,-2.43421059,0.015488626,neg,ns,-0.008137393,0.005441703,-1.495376176,0.135833575,neg,ns,0.866992869,-0.0000223,0.00018714,-0.119173046,0.905215451,neg,ns,0.867443752,Vti1a,Vti1a_threeUTR,19,55627075,55627124,55627075,55627076,50,+,CGAGGAAAACAGCCTGCCTGCTGCTGTATTTGAAGTTGTAATGGTGTCAA,3' UTR,19,55316350,55627309,310960,1,Vti1a-202,310725,Vti1a-202;Vti1a-201,Vti1a;Vti1a,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,8,32,53611,ENSMUSG00000024983,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
459,cg14235983,0.00000847,0.0000112,0.753332206,0.451822053,gain,ns,0.0000465,0.0000191,2.433639024,0.015512631,pos,ns,-0.006734392,0.005597326,-1.203144525,0.229838432,neg,ns,0.63857735,0.000286285,0.000192492,1.487261478,0.13796217,pos,ns,0.816500812,Gm48608,Gm48608_Intergenic_downstream,12,6046933,6046982,6046933,6046934,50,+,CGACACCATATGGCGGCAGAAAAACAGATTCCACCGTGTTCCATTTGTTA,Distal Intergenic,12,6005667,6006240,574,1,Gm48608-201,41266,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,4,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17028,cg09256836,-0.0000536,0.0000109,-4.922129368,0.00000139,loss,yes,-0.000045,0.0000185,-2.433479295,0.015519346,neg,ns,-0.003921118,0.005420811,-0.723345334,0.470013177,neg,ns,0.327889966,-0.000331135,0.000186421,-1.776270845,0.076669042,neg,ns,0.58573587,Fbxo11,Fbxo11_threeUTR,17,87993146,87993195,87993194,87993195,50,+,CCTTTCATTGTCACATTAACACCAGATGCTAAAAATAAGCCTCCAAACCG,3' UTR,17,87990859,88065028,74170,2,Fbxo11-203,71833,Fbxo11-203;Fbxo11-201;Fbxo11-204;Fbxo11-206;Fbxo11-202;Msh6-201,Fbxo11;Fbxo11;Fbxo11;Fbxo11;Fbxo11;Msh6,0;0;0;0;0;18084,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,3,225055,ENSMUSG00000005371,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16781,cg09057440,-0.00000465,0.0000014,-3.32141876,0.00100266,loss,ns,0.00000578,0.00000238,2.43309857,0.01553536,pos,ns,0.001654274,0.000696216,2.376093451,0.018104379,pos,ns,1.742216372,-0.0000442,0.0000239,-1.84477163,0.066024569,neg,ns,0.045606859,Pcbp1,Pcbp1_Exon,6,86525399,86525448,86525447,86525448,50,-,ACTGGGAGAGCGTCTCCAGCATGACCAGGCAAATCTGCTTGACACACTCG,Promoter (<=1kb),6,86524492,86526321,1830,2,Pcbp1-201,873,Pcbp1-201,Pcbp1,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,14,15,23983,ENSMUSG00000051695,mapped to different genes,6,86525220,86525644,425,*,425,38,0.665882353,0.811965812,0.089411765,3.12E-27,CpGisland,TRUE,U1,Pr-A
457,cg22329527,-0.00000224,0.00000219,-1.022205924,0.30748048,loss,ns,0.00000905,0.00000372,2.432586504,0.015556922,pos,ns,0.00262422,0.001089548,2.408539773,0.016599745,pos,ns,1.779898584,-0.000059,0.0000375,-1.573732232,0.116569363,neg,ns,0.956132176,Upf2,Upf2_Exon,2,6029362,6029411,6029362,6029363,50,+,CGTTATGTTTGGTGGAAGAAAAGTTTGGAGGTTTGGACAAAAGACCATCC,"Exon (Upf2-201/Upf2, exon 15 of 22)",2,5951469,6056703,105235,1,Upf2-201,77893,Upf2-201;Upf2-202,Upf2;Upf2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,5,326622,ENSMUSG00000043241,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25556,cg25389956,-0.0000542,0.0000257,-2.111517715,0.035527869,loss,ns,-0.000106128,0.0000436,-2.431772872,0.015591237,neg,ns,0.127670643,0.012785744,9.985390287,1.53E-20,pos,yes,19.81392388,-0.004230167,0.000439701,-9.620560778,2.42E-19,neg,yes,0.746616406,Ebf3,Ebf3_Intron,7,137219024,137219073,137219024,137219025,50,-,CGAAGCACCCTGTCACCAGCCTGGTTGGGAAATTAGCAAATAATGTTCTT,"Intron (Ebf3-204/Ebf3, intron 10 of 15)",7,137193673,137314445,120773,2,Ebf3-204,95372,Ebf3-204;Ebf3-201;Ebf3-202;Ebf3-203;Ebf3-208;Ebf3-205;Ebf3-207,Ebf3;Ebf3;Ebf3;Ebf3;Ebf3;Ebf3;Ebf3,0;0;0;0;0;0;7729,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,62,84,13593,ENSMUSG00000010476,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24713,cg24011653,0.0000545,0.00000497,10.96041082,7.63E-24,gain,yes,-0.0000205,0.00000845,-2.431734356,0.015592863,neg,ns,-0.001193758,0.002474588,-0.482406885,0.629857377,neg,ns,0.20075778,-0.0000745,0.0000851,-0.875661864,0.381891861,neg,ns,0.096650012,Setd1a,Setd1a_Exon,7,127778165,127778214,127778165,127778166,50,+,CGAGCTTCCAGTGGCGGAACTACAAGCTCATCGTGGATCCTGCCTTGGAC,"Exon (Setd1a-201/Setd1a, exon 2 of 19)",7,127776670,127800122,23453,1,Setd1a-201,1495,Orai3-202;Orai3-201;Orai3-203;Setd1a-201;Setd1a-206;Setd1a-203;Setd1a-202;Setd1a-205;Setd1a-204,Orai3;Orai3;Orai3;Setd1a;Setd1a;Setd1a;Setd1a;Setd1a;Setd1a,8350;8350;8350;0;0;0;0;0;-363,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,233904,ENSMUSG00000042308,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24082,cg26991473,-0.0000146,0.00000716,-2.041992152,0.041998362,loss,ns,0.0000296,0.0000122,2.431249467,0.015613347,pos,ns,0.005678449,0.003563604,1.593456697,0.112076831,pos,ns,0.950484158,-0.000100054,0.000122552,-0.816416464,0.414888898,neg,ns,0.104642012,Zic5,Zic5_Intergenic_downstream,14,122453974,122454023,122454022,122454023,50,-,CAAAGGGTTTCTCATTCAGCGGTGACTGCTTCGCACTTTTATTAAGTCCG,Distal Intergenic,14,122459193,122460021,829,2,Zic5-202,6047,Zic5-201,Zic5,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,14,26,65100,ENSMUSG00000041703,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20969,cg24873842,-0.00000045,0.00000403,-0.111614925,0.91120097,loss,ns,0.0000167,0.00000685,2.430790251,0.015632768,pos,ns,0.003074129,0.002007009,1.531696891,0.126617078,pos,ns,0.897507713,-0.00004,0.000069,-0.580148712,0.562235771,neg,ns,0.935520573,Zfp326,Zfp326_Exon,5,105888542,105888591,105888590,105888591,50,-,TTATGGTGGTCGATTTGAGAGCTCCTACCGGAATAGCCTTGACTCTTTCG,"Exon (Zfp326-201/Zfp326, exon 5 of 12)",5,105876565,105914780,38216,1,Zfp326-209,11977,Zfp326-209;Zfp326-208;Zfp326-201;Zfp326-205;Zfp326-206;Zfp326-202;Zfp326-203;Zfp326-204,Zfp326;Zfp326;Zfp326;Zfp326;Zfp326;Zfp326;Zfp326;Zfp326,0;0;0;0;0;11601;0;-2353,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,11,54367,ENSMUSG00000029290,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8098,cg05951553,0.0000927,0.0000118,7.864948651,6.19E-14,gain,yes,-0.0000487,0.00002,-2.430420425,0.015648424,neg,ns,0.010337864,0.005864827,1.762688575,0.078938369,pos,ns,1.102711853,-0.000196786,0.000201691,-0.975680481,0.329983569,neg,ns,0.597384141,Ebf1,Ebf1_Intron,11,44741250,44741299,44741250,44741251,50,+,CGCCACTTCCCAAAGTGAAGGGCCGCTGAAAGAAAATCAATCATGTCATA,"Intron (Ebf1-203/Ebf1, intron 6 of 15)",11,44617317,45004995,387679,1,Ebf1-203,123933,Ebf1-203;Ebf1-202;Ebf1-201,Ebf1;Ebf1;Ebf1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,80,13591,ENSMUSG00000057098,conserved gene and region,11,44741176,44741251,76,*,76,9,0.723684211,0.904761905,0.118421053,8.12E-08,CpGisland,TRUE,NA,NRS
27512,cg14181386,0.000029,0.0000148,1.953236058,0.051691016,gain,ns,0.0000612,0.0000252,2.430411687,0.015648794,pos,ns,-0.002429385,0.007382489,-0.329074042,0.742321932,neg,ns,0.129407708,0.000615546,0.000253883,2.424523258,0.015899955,pos,ns,0.776436359,Pbx1,Pbx1_Intergenic_upstream,1,168676999,168677048,168677047,168677048,50,-,GTGGTTCAACGATGACAGATTGAGAAGAACTGTCCCCCTCTCGACAGGCG,Distal Intergenic,1,168119364,168432270,312907,2,Pbx1-208,-244778,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,17,84,18514,ENSMUSG00000052534,conserved gene and region,1,168676888,168677048,161,*,161,10,0.527950311,0.897435897,0.062111801,0.00000521,CpGisland,TRUE,U15,NS
20391,cg17116410,0.000165605,0.0000171,9.667476957,1.70E-19,gain,yes,-0.0000707,0.0000291,-2.430404931,0.015649081,neg,ns,0.009358842,0.008525847,1.097702401,0.273186346,pos,ns,0.563541011,-0.000168369,0.000293203,-0.574239297,0.566222312,neg,ns,0.393347422,Hoxc4,Hoxc4_Promoter,15,103018875,103018924,103018923,103018924,50,-,CAAACCCACAATATATTTACATCATATATAATCTTAACTGTCCAGCCACG,Promoter (<=1kb),15,103018934,103036405,17472,1,Hoxc4-202,-59,Hoxc4-202;Hoxc5-202;Hoxc5-201,Hoxc4;Hoxc5;Hoxc5,0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,91,15423,ENSMUSG00000075394,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
25290,cg16328301,0.000199155,0.0000262,7.604211248,3.45E-13,gain,yes,-0.000108132,0.0000445,-2.430295801,0.015653703,neg,ns,0.052794641,0.013035075,4.050198387,0.0000647,pos,ns,4.188936119,-0.0012671,0.000448275,-2.826612161,0.005010002,neg,ns,0.512391214,Tmem183a,Tmem183a_Exon,1,134355555,134355604,134355555,134355556,50,+,CGCACCTTCGGTACAACCTGGTCCAAAAGGCAGCAGTGCAAGTGACAGTC,"Exon (Tmem183a-201/Tmem183a, exon 4 of 8)",1,134346097,134361979,15883,2,Tmem183a-201,6375,Tmem183a-201;Tmem183a-205;Tmem183a-203;Tmem183a-202,Tmem183a;Tmem183a;Tmem183a;Tmem183a,0;0;0;6086,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,2,57439,ENSMUSG00000042305,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3068,cg12957948,0.0000237,0.00000659,3.590435165,0.000383667,gain,ns,0.0000272,0.0000112,2.430246593,0.015655788,pos,ns,0.000028,0.003279365,0.00852812,0.993201112,pos,ns,0.002962803,0.000149864,0.000112777,1.328848698,0.184875156,pos,ns,0.830350345,Lrmda,Lrmda_Intron,14,22505946,22505995,22505946,22505947,50,-,CGAAATGGCTAAGCAGCCCAAGATGGATGGGGCACAGAACCGGCAAGGTC,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,486234,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206;Lrmda-202,Lrmda;Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25418,cg23517415,0.00000299,0.00000391,0.763537099,0.44572384,gain,ns,-0.0000162,0.00000665,-2.429626601,0.015682077,neg,ns,-0.001017355,0.001947707,-0.522334575,0.601810454,neg,ns,0.220540272,-0.0000561,0.000067,-0.837100746,0.403180799,neg,ns,0.884897987,Hnrnpr,Hnrnpr_Exon,4,136332460,136332509,136332508,136332509,50,-,TGCTTCCTTGAATATGAGGATCACAAGTCAGCAGCACAAGCCAGACGCCG,"Exon (Hnrnpr-204/Hnrnpr, exon 7 of 10)",4,136310942,136340681,29740,1,Hnrnpr-204,21518,Hnrnpr-204;Hnrnpr-202;Hnrnpr-207;Hnrnpr-201;Hnrnpr-206;Hnrnpr-205;Hnrnpr-208,Hnrnpr;Hnrnpr;Hnrnpr;Hnrnpr;Hnrnpr;Hnrnpr;Hnrnpr,0;0;0;0;0;20869;-3564,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,7,74326,ENSMUSG00000066037,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9783,cg23779931,-0.0000142,0.00000695,-2.043195558,0.041878368,loss,ns,-0.0000287,0.0000118,-2.429584196,0.015683876,neg,ns,-0.008415326,0.003458858,-2.43297801,0.015540434,neg,ns,1.808536849,-0.0000326,0.00011895,-0.273894066,0.784348438,neg,ns,0.847691904,Grm6,Grm6_Exon,11,50854059,50854108,50854059,50854060,50,-,CGCCCGGGGCATCATCATCTTTGCCAATGAGGATGACATCAGGTGGGACA,"Exon (Grm6-204/Grm6, exon 4 of 11)",11,50850685,50866206,15522,1,Grm6-204,3374,Grm6-203;Grm6-204;Grm6-201;Grm6-202,Grm6;Grm6;Grm6;Grm6,3374;0;0;-2716,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,108072,ENSMUSG00000000617,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9020,cg20167424,-0.0000215,0.00000724,-2.964177024,0.00327025,loss,ns,-0.0000299,0.0000123,-2.42899538,0.015708882,neg,ns,-0.008820085,0.003602792,-2.448124786,0.014914291,neg,ns,1.826397392,0.000237732,0.0001239,1.918744653,0.055934765,pos,ns,0.802428083,Srf,Srf_Exon,17,46553761,46553810,46553809,46553810,50,+,ATGGCCTGTCTCACTGGCCACCAGCAACAGCACCTGTGTCCCTGTCAGCG,"Exon (Srf-201/Srf, exon 2 of 7)",17,46548329,46556175,7847,2,Srf-201,2365,Srf-201;Srf-203;Srf-202;Srf-204,Srf;Srf;Srf;Srf,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,11,20807,ENSMUSG00000015605,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
7322,cg02577949,0.00000786,0.000002,3.929703359,0.000104919,gain,ns,-0.00000825,0.0000034,-2.428872191,0.015714118,neg,ns,-0.00116895,0.000995312,-1.174456343,0.241113683,neg,ns,0.617778143,0.0000915,0.0000342,2.67247532,0.0079277,pos,ns,0.96151178,Rbm27,Rbm27_Exon,18,42300423,42300472,42300471,42300472,50,+,AGTTGGTCTAATTACTATAACAATCATAGCTCTTCCAATTCTTTTGGTCG,"Exon (Rbm27-201/Rbm27, exon 6 of 20)",18,42275353,42341542,66190,1,Rbm27-201,25070,Rbm27-201;Rbm27-202;Rbm27-203;Rbm27-204;Rbm27-205,Rbm27;Rbm27;Rbm27;Rbm27;Rbm27,0;0;0;2180;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,10,225432,ENSMUSG00000024491,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12310,cg15103858,-0.0000265,0.0000267,-0.989245302,0.323314632,loss,ns,0.000110347,0.0000454,2.428723553,0.015720438,pos,ns,0.020536884,0.013310656,1.542890464,0.123877519,pos,ns,0.907007503,-0.000598621,0.000457752,-1.307739432,0.191930673,neg,ns,0.7037089,Gm18541,Gm18541_Intergenic_upstream,9,63881001,63881050,63881049,63881050,50,+,TAGCAACTTTGGGCATTTTCATGCAAATTGGCTTCTATATAGATGATACG,Distal Intergenic,9,63898265,63898802,538,1,Gm18541-201,-17215,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,13,100417338,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15877,cg04124389,0.0000117,0.00000482,2.419983632,0.016096009,gain,ns,0.0000199,0.0000082,2.427371102,0.015778044,pos,ns,0.001935301,0.00240087,0.806083289,0.420812742,pos,ns,0.375911119,0.0000355,0.0000826,0.429784308,0.667651133,pos,ns,0.085702436,Gm6411,Gm6411_Exon,13,83739584,83739633,83739632,83739633,50,-,CTCTGCGCCTAGCATTGGAAATGAAAGTGACATTTACGCCACAACCCACG,"Exon (C130071C03Rik-201/C130071C03Rik-201, exon 4 of 4)",13,83761132,83762335,1204,2,Gm6411-201,22751,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,36,623241,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
2703,cg17521136,0.0000396,0.0000163,2.435794917,0.015422258,gain,ns,0.0000671,0.0000277,2.427283673,0.015781774,pos,ns,0.022380508,0.008100816,2.762747302,0.006074079,pos,ns,2.21651956,-0.00014353,0.000278586,-0.515208934,0.606774211,neg,ns,0.246459492,Adk,Adk_Intron,14,21434779,21434828,21434827,21434828,50,+,TGCTCCAGCTTTCTGATCTCCTGCAGTTTATTTTTATAACAACCTTATCG,"Intron (Adk-201/Adk, intron 10 of 10)",14,21052574,21448569,395996,1,Adk-201,382205,Adk-201;Adk-207,Adk;Adk,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,10,11534,ENSMUSG00000039197,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4028,cg02275662,0.0000715,0.0000148,4.821920876,0.00000223,gain,ns,-0.0000611,0.0000252,-2.42717733,0.015786312,neg,ns,-0.007494527,0.007377669,-1.015839389,0.310498043,neg,ns,0.507941132,0.0004775,0.000253717,1.882016782,0.060770367,pos,ns,0.495351021,Gm45647,Gm45647_Intergenic_upstream,8,26529984,26530033,26529984,26529985,50,-,CGGCTGTCATAGGCCCATGTTCGATTTATTTAAATTGAATGAATAAGTAC,Distal Intergenic,8,26780315,26780509,195,1,Gm45647-201,-250331,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,46,62,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11497,cg08435157,0.0000395,0.00000553,7.149389046,6.29E-12,gain,yes,-0.0000228,0.0000094,-2.426757531,0.01580424,neg,ns,-0.000723602,0.002753241,-0.262818318,0.792865197,neg,ns,0.100800645,0.0000553,0.0000947,0.584561741,0.559267617,pos,ns,0.902628034,Nptn,Nptn_Exon,9,58618763,58618812,58618811,58618812,50,+,GTGGTACGCAGAAGTCAACCGGGCAGAGTCTTTCAGACAGCTGTGGGACG,"Exon (Nptn-212/Nptn, exon 2 of 8)",9,58582240,58651318,69079,1,Nptn-212,36523,Nptn-212;Nptn-201;Nptn-213;Nptn-206;Nptn-203;Nptn-202;Nptn-211;Nptn-207;Nptn-204,Nptn;Nptn;Nptn;Nptn;Nptn;Nptn;Nptn;Nptn;Nptn,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,20,22,20320,ENSMUSG00000032336,conserved gene and region,9,58618678,58618932,255,*,255,20,0.6,0.879917184,0.078431373,1.96E-13,CpGisland,TRUE,NA,NRS
2283,cg18419637,-0.00000975,0.00000162,-6.028989599,4.69E-09,loss,yes,0.00000666,0.00000275,2.426430187,0.015818231,pos,ns,0.000870549,0.000804561,1.082017461,0.280085719,pos,ns,0.552709034,-0.0000418,0.0000277,-1.509375231,0.132221446,neg,ns,0.966012834,Meis1,Meis1_Exon,11,18941672,18941721,18941720,18941721,50,+,AACAGCCACGCCCTCATGATATTTGTGGCTACTTTGGGAAAGATGCCACG,"Exon (Meis1-206/Meis1, exon 8 of 10)",11,18879817,19018985,139169,2,Meis1-206,77264,Meis1-206;Meis1-202;Meis1-209;Meis1-201;Meis1-203;Meis1-208;Meis1-207,Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,21,88,17268,ENSMUSG00000020160,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19867,cg18223063,-0.0000239,0.00000858,-2.789913581,0.005598667,loss,ns,0.0000354,0.0000146,2.426370245,0.015820794,pos,ns,0.008015067,0.004269636,1.877224606,0.06142625,pos,ns,1.211645998,-0.000176508,0.000146832,-1.202107015,0.23023952,neg,ns,0.865201304,Cycs-ps2,Cycs-ps2_Intergenic_downstream,5,101381169,101381218,101381169,101381170,50,-,CGGGAAGTAGGAAGAACTGCACTTTAAAAGGATTTTAAATAATGTCTCCA,Distal Intergenic,5,101305578,101305869,292,1,Cycs-ps2-201,75640,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,10,13065,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16059,cg19757824,-0.00000984,0.0000137,-0.720516937,0.471749724,loss,ns,0.0000563,0.0000232,2.425871014,0.015842156,pos,ns,0.00164444,0.006797783,0.241908244,0.80901121,pos,ns,0.092045461,0.000292442,0.000233775,1.250954101,0.211894507,pos,ns,0.786393203,Zfp407,Zfp407_Intron,18,84329427,84329476,84329427,84329428,50,+,CGAGCCCTTGTTCTGTGTGATAAGGCAATCTCCTCCGGGATCTGAGCTGT,"Intron (Zfp407-201/Zfp407, intron 2 of 2)",18,84128027,84558425,430399,2,Zfp407-201,228949,Zfp407-201;Zfp407-202;Zfp407-203,Zfp407;Zfp407;Zfp407,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,32,240476,ENSMUSG00000048410,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1308,cg01767626,0.00000976,0.00000203,4.808346047,0.00000238,gain,ns,-0.00000837,0.00000345,-2.425264352,0.01586815,neg,ns,-0.001525477,0.001010655,-1.509393439,0.132216797,neg,ns,0.878713367,0.0000616,0.0000348,1.771847202,0.077402203,pos,ns,0.036232225,Fezf2,Fezf2_Intergenic_downstream,14,12340461,12340510,12340461,12340462,50,+,CGACAGCCTGAGGAAGCTGTCGCCGTCCTCTGTGCAAACAAAATCGACAA,Downstream (1-2kb),14,12342094,12345844,3751,2,Fezf2-203,5334,Fezf2-203;Fezf2-201;Fezf2-202,Fezf2;Fezf2;Fezf2,0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,21,45,54713,ENSMUSG00000021743,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
4123,cg21866794,0.0000164,0.0000081,2.024419175,0.043784184,gain,ns,0.0000334,0.0000138,2.425260473,0.015868316,pos,ns,0.014308315,0.004031365,3.549248333,0.000446188,pos,ns,3.350482128,-0.000313656,0.000138638,-2.262401835,0.024364525,neg,ns,0.860629481,Gm12073,Gm12073_Intergenic_upstream,11,26926075,26926124,26926123,26926124,50,+,GCTGTTTGAAGCTGGCGCGTTTGAAGCTGCCGCGCGTGTTTGAAGCTGCG,Distal Intergenic,11,26856387,26856910,524,2,Gm12073-201,-69165,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,4,100416537,NA,mapped to different genes,11,26926005,26926232,228,*,228,17,0.557017544,1.061336254,0.074561404,3.94E-11,CpGisland,TRUE,U15,NS
21590,cg05539679,-0.00001,0.00000406,-2.474350577,0.013882828,loss,ns,0.0000167,0.0000069,2.425119483,0.015874363,pos,ns,0.002496603,0.002020579,1.235587664,0.217547389,pos,ns,0.662446124,-0.0000955,0.0000695,-1.374634634,0.170237571,neg,ns,0.922199024,Zfhx3,Zfhx3_Intron,8,108468050,108468099,108468098,108468099,50,+,TTACTAATGACACCGCGAAGCTGTACCACCAGCACAGGACAGTGATTACG,"Intron (Zfhx3-204/Zfhx3, intron 3 of 15)",8,107942644,108961630,1018987,1,Zfhx3-204,525406,Zfhx3-204,Zfhx3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,114,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23054,cg14360629,0.00000448,0.00000555,0.807892105,0.419772189,gain,ns,-0.0000229,0.00000943,-2.424940722,0.015882032,neg,ns,-0.005312883,0.002762329,-1.923334509,0.055353741,neg,ns,1.256853022,0.000188887,0.000095,1.988363942,0.047650561,pos,ns,0.818037862,Taok3,Taok3_fiveUTR,5,117240965,117241014,117240965,117240966,50,-,CGGGGACTAGCAGAGAGCTAAACTATGCATTTCAAACAGCAGTGCTTGTG,5' UTR,5,117120129,117275217,155089,1,Taok3-203,120836,Taok3-203;Taok3-210;Taok3-201;Taok3-205;Taok3-208;Taok3-202,Taok3;Taok3;Taok3;Taok3;Taok3;Taok3,0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,11,20,330177,ENSMUSG00000061288,conserved gene and region,5,117240845,117241057,213,*,213,11,0.549295775,0.743809524,0.051643193,0.00000834,CpGisland,TRUE,U10,Tr-S
22332,cg16480381,0.00000808,0.000022,0.368043899,0.713091678,gain,ns,0.0000904,0.0000373,2.424315521,0.01590888,pos,ns,0.042100473,0.010927924,3.8525591,0.000142064,pos,ns,3.847516252,-0.001166527,0.00037581,-3.104030909,0.002085117,neg,ns,0.477954125,Dach2,Dach2_Intron,X,113307343,113307392,113307343,113307344,50,-,CGTTAAGCTAGTTTGCACACAGGGACCGCACTTAGGAAATTGAATGGAAA,"Intron (Dach2-204/Dach2, intron 2 of 15)",20,113297510,113836386,538877,1,Dach2-204,9833,Dach2-204;Dach2-203;Dach2-202;Dach2-208;Dach2-205;Dach2-201;Dach2-207,Dach2;Dach2;Dach2;Dach2;Dach2;Dach2;Dach2,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,4,93837,ENSMUSG00000025592,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5729,cg22718336,-0.00000467,0.0000126,-0.371900592,0.710220948,loss,ns,0.0000517,0.0000213,2.424078078,0.015919087,pos,ns,0.018839093,0.00625187,3.013353398,0.002796864,pos,ns,2.553328679,-0.000382489,0.000215001,-1.779006204,0.076218547,neg,ns,0.751956118,Sox2,Sox2_Intron,3,34637965,34638014,34637965,34637966,50,-,CGGCATCTTTTGTTGGCCCCATACAAGAGAGAACAAAATGGTTATTCAGG,"Intron (Sox2ot-204/Sox2ot-204, intron 3 of 3)",3,34650405,34652461,2057,1,Sox2-201,-12440,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,34,62,20674,ENSMUSG00000074637,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22130,cg06415356,0.0000336,0.00000403,8.340476637,2.46E-15,gain,yes,-0.0000166,0.00000685,-2.423948014,0.015924681,neg,ns,0.001035137,0.002007161,0.515721801,0.606416331,pos,ns,0.217229111,0.0000978,0.000069,1.416646648,0.157590362,pos,ns,0.911185304,Traf3,Traf3_Exon,12,111251147,111251196,111251195,111251196,50,+,AGAGTGTGTCAATGCCCCCAGCACCTGTAGTTTTAAGCGCTATGGCTGCG,"Exon (Traf3-201/Traf3, exon 8 of 12)",12,111166370,111267153,100784,1,Traf3-203,84777,Traf3-203;Traf3-201;Traf3-202;Traf3-205,Traf3;Traf3;Traf3;Traf3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,22031,ENSMUSG00000021277,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19393,cg16965309,-0.0000326,0.00000544,-5.983975799,6.01E-09,loss,yes,0.0000224,0.00000925,2.423727699,0.01593416,pos,ns,-0.006320223,0.002709542,-2.332579809,0.020309981,neg,ns,1.692290486,0.0000981,0.0000932,1.052915458,0.293199742,pos,ns,0.845386162,Efnb1,Efnb1_Intergenic_downstream,X,99215467,99215516,99215467,99215468,50,+,CGTTCCAGCCCTATGATTCTATGATTCCAGCTGGGGGTATCCAATTAACC,Distal Intergenic,20,99138131,99147230,9100,1,Efnb1-202,77336,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,14,13641,ENSMUSG00000031217,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3361,cg06789213,0.0000353,0.00000928,3.8082129,0.000168732,gain,ns,-0.0000382,0.0000158,-2.423210015,0.015956452,neg,ns,0.027246334,0.004617578,5.90056863,9.49E-09,pos,ns,8.022933876,-0.000321991,0.000158798,-2.027674238,0.043448614,neg,ns,0.817467787,Mapre2,Mapre2_Exon,18,23832885,23832934,23832885,23832886,50,-,CGATAACCCAAGAGACTATGAGCAGACATGACATCATTGCATGGGTTAAT,"Exon (Mapre2-209/Mapre2, exon 3 of 8)",18,23752333,23893861,141529,1,Mapre2-209,80552,Mapre2-209;Mapre2-207;Mapre2-203;Mapre2-202;Mapre2-201;Mapre2-205;Mapre2-208,Mapre2;Mapre2;Mapre2;Mapre2;Mapre2;Mapre2;Mapre2,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,5,212307,ENSMUSG00000024277,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20554,cg03211007,0.00011096,0.0000239,4.651606888,0.00000488,gain,ns,-0.0000982,0.0000405,-2.423180422,0.015957727,neg,ns,-0.006171629,0.011872484,-0.519826258,0.603555661,neg,ns,0.219282672,0.0000106,0.000408294,0.026026254,0.979253143,pos,ns,0.501039867,Gm8730,Gm8730_Intergenic_upstream,8,103442834,103442883,103442882,103442883,50,+,TCTGTTTTGTGCCAGAGCTGTCTGGTCTCTCCAAACACTTAATCCAGCCG,Distal Intergenic,8,102864845,102865798,954,2,Gm8730-201,-577036,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,4,667618,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
64,cg10288441,-0.00000463,0.00000315,-1.467773354,0.143179648,loss,ns,-0.000013,0.00000536,-2.423114079,0.015960586,neg,ns,0.003445909,0.001570101,2.194705687,0.028926164,pos,ns,1.538709151,-0.000266548,0.000054,-4.936469777,0.0000013,neg,yes,0.919005781,Chka,Chka_threeUTR,19,3871018,3871067,3871018,3871019,50,-,CGTGCCTGGAGCACTCTGGTTTCCAGGTGACAGACACGATTCACGGTATA,3' UTR,19,3851773,3894365,42593,1,Chka-209,19245,Chka-209;Chka-202;Chka-205;Chka-207;Chka-214;Chka-203;Chka-201;Chka-210;Chka-206;Chka-213;Chka-212;Chka-211;Chka-208,Chka;Chka;Chka;Chka;Chka;Chka;Chka;Chka;Chka;Chka;Chka;Chka;Chka,0;0;0;0;19186;0;0;0;0;-3597;-4298;-4312;-4338,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,2,12660,ENSMUSG00000024843,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23322,cg12364345,0.00000156,0.00000656,0.237993878,0.81204307,gain,ns,0.000027,0.0000111,2.423053473,0.015963199,pos,ns,0.003511073,0.003265948,1.075054804,0.283186207,pos,ns,0.547927904,0.0000337,0.000112316,0.299813508,0.764520341,pos,ns,0.917013887,Cdca7l,Cdca7l_Intron,12,117806371,117806420,117806371,117806372,50,+,CGATGACAATGTGGGAAGCAGTTAGCTTCCAATTTAGCAGAAAATTAAGA,"Intron (Cdca7l-202/Cdca7l, intron 1 of 4)",12,117804289,117870047,65759,1,Cdca7l-202,2082,Cdca7l-202,Cdca7l,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,7,217946,ENSMUSG00000021175,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21549,cg11787192,0.0000053,0.0000014,3.779961807,0.000188119,gain,ns,-0.00000578,0.00000238,-2.422785381,0.015974758,neg,ns,0.0000918,0.000698495,0.131388755,0.895553012,pos,ns,0.047908701,-0.00000173,0.000024,-0.072052039,0.942606958,neg,ns,0.95563629,Ppp1r12a,Ppp1r12a_Exon,10,108234096,108234145,108234096,108234097,50,+,CGAATTTTAGTGGACAATCTGTGTGATATGGAGATGGTCAACAAAGTGGT,"Exon (Ppp1r12a-205/Ppp1r12a, exon 5 of 25)",10,108162193,108277351,115159,1,Ppp1r12a-205,71903,Ppp1r12a-205;Ppp1r12a-201,Ppp1r12a;Ppp1r12a,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,8,17931,ENSMUSG00000019907,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19453,cg17344908,0.0000315,0.0000145,2.168098021,0.030911748,gain,ns,0.0000598,0.0000247,2.422336005,0.015994151,pos,ns,0.011092954,0.00722837,1.534641167,0.125891932,pos,ns,0.900002103,-0.000055,0.000248583,-0.221325667,0.824984579,neg,ns,0.433788693,Gm12689,Gm12689_Intergenic_downstream,4,99354087,99354136,99354135,99354136,50,-,AAGCACTGGGTCAGAAATCAATAAACAACACTGAAATGTAGCAGAGGTCG,Distal Intergenic,4,99295900,99297258,1359,1,Gm12689-201,58236,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,12,26,100137011,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3565,cg24597059,0.00000857,0.00000806,1.063724742,0.288281292,gain,ns,0.0000332,0.0000137,2.422116275,0.016003642,pos,ns,0.010158408,0.004011274,2.532464226,0.011819657,pos,ns,1.927395144,-0.000162542,0.000137947,-1.178291934,0.239583924,neg,ns,0.12550978,Gbx1,Gbx1_Promoter,5,24530561,24530610,24530561,24530562,50,+,CGGAGGCGTGAAATTGGTTTGGAGCAAACACATTACGAAAAGCAATTACC,Promoter (3-4kb),5,24502757,24527202,24446,2,Gbx1-201,-3359,Asb10-201;Asb10-202;Asb10-203;Gbx1-201,Asb10;Asb10;Asb10;Gbx1,9847;10368;9982;-3359,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,1,231044,ENSMUSG00000067724,conserved gene but different region,5,24530497,24530568,72,*,72,8,0.680555556,1.010526316,0.111111111,0.000000967,CpGisland,TRUE,U13,Hc-P
22501,cg19511009,-0.0000101,0.00000312,-3.242085895,0.001315794,loss,ns,0.0000128,0.0000053,2.42169696,0.016021766,pos,ns,-0.000828251,0.001552687,-0.533430513,0.594117838,neg,ns,0.226127408,0.0000272,0.0000534,0.508623575,0.611377879,pos,ns,0.941075368,Gm13975,Gm13975_Intron,2,114872571,114872620,114872571,114872572,50,-,CGGGGCATAATTAAAGCTCCAGTAACAGTTGTTAATAGGGTGCAAATAAA,"Intron (Gm13974-201/Gm13974-201, intron 2 of 8)",2,114708112,114708893,782,1,Gm13975-201,164508,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,9,100043219,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7492,cg27425459,0.0000477,0.00000441,10.80901371,2.54E-23,gain,yes,-0.0000182,0.0000075,-2.421576096,0.016026993,neg,ns,-0.003561011,0.002195956,-1.621622178,0.105900867,neg,ns,0.975100486,0.000200493,0.0000755,2.654879088,0.008343417,pos,ns,0.87724573,Mrps9,Mrps9_Intron,1,42888687,42888736,42888687,42888688,50,+,CGCCGGTTTGATCTGTGGTAATATTTGTGAAGGTTCCATATGGACTTGAG,"Intron (Mrps9-201/Mrps9, intron 5 of 10)",1,42851233,42905682,54450,1,Mrps9-201,37454,Mrps9-201;Mrps9-202;Mrps9-203;Mrps9-204;Mrps9-206,Mrps9;Mrps9;Mrps9;Mrps9;Mrps9,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,12,69527,ENSMUSG00000060679,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14239,cg24357465,0.00000904,0.000013,0.69508709,0.487521395,gain,ns,-0.0000535,0.0000221,-2.421490299,0.016030705,neg,ns,-0.013134949,0.006470424,-2.029998117,0.043210379,neg,ns,1.364411922,0.0000806,0.000222517,0.362195059,0.717453053,pos,ns,0.693205039,Sgsm2,Sgsm2_Exon,11,74863661,74863710,74863661,74863662,50,+,CGGCTGGCCGCTAGGTGGTGGTAGTTAATAGTGACTGCTCAAAGAGAACA,"Exon (Sgsm2-202/Sgsm2, exon 12 of 24)",11,74849261,74897060,47800,2,Sgsm2-201,33350,Sgsm2-201;Sgsm2-202;Sgsm2-203;Sgsm2-205;Sgsm2-204,Sgsm2;Sgsm2;Sgsm2;Sgsm2;Sgsm2,0;0;-3086;5382;4678,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,97761,ENSMUSG00000038351,conserved gene and region,11,74863567,74863670,104,*,104,10,0.596153846,1.082206035,0.096153846,0.000000092,CpGisland,TRUE,U11,Tr-P
26312,cg16675333,0.0000234,0.0000124,1.886102813,0.060215747,gain,ns,0.000051,0.0000211,2.421353396,0.016036629,pos,ns,0.006936621,0.006172501,1.123794148,0.26196985,pos,ns,0.581748689,-0.000118585,0.000212272,-0.558645851,0.576806733,neg,ns,0.662552496,Brinp3,Brinp3_Exon,1,146514801,146514850,146514849,146514850,50,+,GGTTTTAGCGGTTGCTGCTGTTTCGGATCAGCATGCCACAAGCCCCTTCG,"Exon (Brinp3-201/Brinp3, exon 2 of 8)",1,146494760,146902471,407712,1,Brinp3-201,20041,Brinp3-201;Brinp3-204;Brinp3-205;Brinp3-203;Brinp3-202,Brinp3;Brinp3;Brinp3;Brinp3;Brinp3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,5,215378,ENSMUSG00000035131,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7833,cg25455752,0.0000631,0.0000144,4.376984301,0.0000165,gain,ns,-0.0000593,0.0000245,-2.420831063,0.01605925,neg,ns,0.04577266,0.007180029,6.37499681,6.63E-10,pos,ns,9.178754955,-0.001304503,0.000246921,-5.283086804,0.00000024,neg,yes,0.181138719,Bcl9l,Bcl9l_Intron,9,44494977,44495026,44495025,44495026,50,-,CTTTCCTTCCTGTGAAACCAGAGCTAGGTTGGGCCTAGCTCAGGATTTCG,"Intron (Bcl9l-206/Bcl9l, intron 1 of 7)",9,44482825,44510422,27598,1,Bcl9l-206,12152,Bcl9l-206;Bcl9l-202;Bcl9l-203;Bcl9l-205;Bcl9l-201;Bcl9l-204,Bcl9l;Bcl9l;Bcl9l;Bcl9l;Bcl9l;Bcl9l,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,9,80288,ENSMUSG00000063382,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U5,En-Sd
14863,cg24533732,-0.00000673,0.00000403,-1.673072445,0.095321811,loss,ns,-0.0000166,0.00000684,-2.420439994,0.016076204,neg,ns,-0.001533665,0.002003514,-0.765487297,0.444563832,neg,ns,0.352065873,-0.000128595,0.0000689,-1.866382014,0.062931982,neg,ns,0.85690736,Phf12,Phf12_threeUTR,11,78024804,78024853,78024804,78024805,50,-,CGTTTTTAGCTCTAGGAGTTCCAGAGCCTATGGGTTGAGAATCAAGAAGG,3' UTR,11,77982754,78026214,43461,1,Phf12-202,42050,Phf12-202;Phf12-201;Phf12-207;Phf12-206;Phf12-208;Phf12-205;Phf12-203;Phf12-204,Phf12;Phf12;Phf12;Phf12;Phf12;Phf12;Phf12;Phf12,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,11,27,268448,ENSMUSG00000037791,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10180,cg26032198,0.0000101,0.00000387,2.608837228,0.009525405,gain,ns,0.0000159,0.00000658,2.419906444,0.016099361,pos,ns,0.001224006,0.001928331,0.634748883,0.526060384,pos,ns,0.278964402,0.0000387,0.0000663,0.582849552,0.560418308,pos,ns,0.073281019,Gm28308,Gm28308_Exon,6,52213425,52213474,52213473,52213474,50,-,CAACTCATAAAGTTGTATTGCAAAGTTGTAAATTTTCATAAACAACAACG,Promoter (<=1kb),6,52163359,52213339,49981,2,Gm28308-201,-135,Gm28308-201;Hoxa3-201;Hoxa3-203;Hoxa6-201;Hoxa7-205;Hoxa7-201;Hoxa7-202;Hoxa7-204;Hoxa7-203,Gm28308;Hoxa3;Hoxa3;Hoxa6;Hoxa7;Hoxa7;Hoxa7;Hoxa7;Hoxa7,0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,30,103,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
19550,cg08656392,0.0000847,0.0000108,7.844584059,7.08E-14,gain,yes,-0.0000444,0.0000183,-2.419379355,0.016122267,neg,ns,0.030448275,0.005375001,5.66479433,3.36E-08,pos,ns,7.473423465,-0.001088954,0.000184846,-5.891146166,9.99E-09,neg,yes,0.417512227,Asic1,Asic1_threeUTR,15,99700237,99700286,99700285,99700286,50,+,GTCTGTACTGTGTACACACATCCCTCTGAGAAGCACAAGGAGACGACACG,3' UTR,15,99670368,99701128,30761,1,Asic1-201,29869,Asic1-201;Asic1-204;Asic1-205;Asic1-206;Asic1-203;Gm17349-201;Smarcd1-201;Smarcd1-203;Smarcd1-202;Smarcd1-204;Smarcd1-206;Smarcd1-205,Asic1;Asic1;Asic1;Asic1;Asic1;Gm17349;Smarcd1;Smarcd1;Smarcd1;Smarcd1;Smarcd1;Smarcd1,0;0;8004;5193;0;5204;0;0;-2308;-2328;-2643;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,6,11419,ENSMUSG00000023017,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
261,cg16872560,0.000120677,0.0000098,12.31966255,1.17E-28,gain,yes,-0.0000403,0.0000166,-2.418984041,0.016139465,neg,ns,0.007902227,0.004875313,1.620865533,0.106063159,pos,ns,0.974435442,0.0000915,0.000167662,0.545560519,0.585760404,pos,ns,0.118576215,Ppp1r9a,Ppp1r9a_fiveUTR,6,4903003,4903052,4903003,4903004,50,-,CGGCCCTAGAGTTAATCCCATCAGCCGAGGTGAGGCACCTGTTACCCCGG,Promoter (<=1kb),6,4903018,5160221,257204,1,Ppp1r9a-208,0,Ppp1r9a-205;Ppp1r9a-204;Ppp1r9a-208;Ppp1r9a-201;Ppp1r9a-206;Ppp1r9a-203;Ppp1r9a-211;Ppp1r9a-210;Ppp1r9a-212;Ppp1r9a-209,Ppp1r9a;Ppp1r9a;Ppp1r9a;Ppp1r9a;Ppp1r9a;Ppp1r9a;Ppp1r9a;Ppp1r9a;Ppp1r9a;Ppp1r9a,0;0;0;0;0;0;0;-2364;-2364;-3355,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,3,243725,ENSMUSG00000032827,conserved gene and region,6,4902882,4903210,329,*,329,33,0.732522796,0.751453488,0.100303951,1.90E-25,CpGisland,TRUE,U1,Pr-A
16943,cg21942865,-0.0000146,0.00000787,-1.850983541,0.065122978,loss,ns,0.0000323,0.0000134,2.418684513,0.016152506,pos,ns,0.016312106,0.003917372,4.164043727,0.0000406,pos,ns,4.391816864,-0.00048963,0.000134718,-3.634475807,0.000325967,neg,ns,0.086819109,Calm2,Calm2_Intergenic_upstream,17,87532252,87532301,87532300,87532301,50,+,AGCAGCCACCAAGGGACCTTGGCTTAATATAACTGGTGACCTGGGAAACG,Distal Intergenic,17,87435626,87446935,11310,2,Calm2-205,-85317,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,3,12314,ENSMUSG00000036438,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
805,cg00250365,-0.0000452,0.0000077,-5.872751239,0.000000011,loss,yes,0.0000316,0.0000131,2.418177621,0.016174598,pos,ns,0.007862438,0.0038317,2.051945277,0.041014648,pos,ns,1.387061015,-0.000275471,0.000131772,-2.090516388,0.037385701,neg,ns,0.801008556,Gm13255,Gm13255_Intergenic_downstream,2,8818320,8818369,8818368,8818369,50,-,TGGGAAGTCAGGCAGAGATTTATTATGGCTGAAAGCCCTTACAGCTGTCG,Distal Intergenic,2,8633937,8634483,547,1,Gm13255-201,184432,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,7,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20010,cg14878968,-0.0000421,0.00000984,-4.277127097,0.0000252,loss,ns,-0.0000404,0.0000167,-2.417460074,0.016205916,neg,ns,0.026783898,0.004898179,5.468133807,9.37E-08,pos,ns,7.028118022,-0.00000662,0.000168448,-0.039296353,0.968679409,neg,ns,0.761006495,Nags,Nags_Exon,11,102148943,102148992,102148991,102148992,50,+,TTCTCCAACAAGCAGTGGATCTTCTTCTGGTTTGGCCTGGCTGATATCCG,"Exon (Nags-202/Nags, exon 4 of 4)",11,102145513,102149477,3965,1,Nags-202,3430,Nags-202;Nags-201;Nags-203;Tmem101-201,Nags;Nags;Nags;Tmem101,0;0;0;7412,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,217214,ENSMUSG00000048217,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10930,cg02125974,-0.0000068,0.0000027,-2.515628228,0.012387277,loss,ns,0.0000111,0.00000459,2.417167057,0.01621872,pos,ns,0.002631346,0.001345446,1.955742916,0.051393424,pos,ns,1.289092448,-0.0000587,0.0000463,-1.267873125,0.205794702,neg,ns,0.948582473,Tcf7l2,Tcf7l2_Intron,19,55888962,55889011,55889010,55889011,50,+,CTGTTGCCGCGGGCTGAGAATTTCATCGACTGATGAGACCAGAGGCTCCG,"Intron (Tcf7l2-213/Tcf7l2, intron 4 of 13)",19,55741820,55933229,191410,1,Tcf7l2-213,147142,Tcf7l2-213;Tcf7l2-201;Tcf7l2-208;Tcf7l2-211;Tcf7l2-212;Tcf7l2-206;Tcf7l2-204;Tcf7l2-205;Tcf7l2-222;Tcf7l2-215;Tcf7l2-214;Tcf7l2-207;Tcf7l2-202;Tcf7l2-209;Tcf7l2-210;Tcf7l2-217;Tcf7l2-220,Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,55,88,21416,ENSMUSG00000024985,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
800,cg19718147,-0.00000343,0.00000433,-0.792619268,0.42860584,loss,ns,0.0000178,0.00000735,2.416855812,0.016232331,pos,ns,0.006089832,0.002153306,2.828131554,0.004986889,pos,ns,2.30217029,-0.000168753,0.0000741,-2.278840931,0.023356287,neg,ns,0.922997176,Gm13255,Gm13255_Intergenic_downstream,2,8761630,8761679,8761678,8761679,50,-,CTATTCAGAGTCTAATTATCTGGTTCAGTGAAAATGCCAAGATTTCTACG,Distal Intergenic,2,8633937,8634483,547,1,Gm13255-201,127742,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,7,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6083,cg06121356,-0.0000121,0.00000825,-1.472108689,0.142006004,loss,ns,0.0000339,0.000014,2.416778549,0.016235711,pos,ns,0.01153844,0.004107678,2.808993361,0.005285216,pos,ns,2.276937266,-0.000395826,0.000141263,-2.802052598,0.00539735,neg,ns,0.84277243,Dock11,Dock11_Exon,X,36009946,36009995,36009994,36009995,50,+,TTTTTTCATTTGCGGTGGACCGTTTGACTTCAGTAGGTAGGTTTAACTCG,"Exon (Dock11-203/Dock11, exon 26 of 49)",20,35888832,36076562,187731,1,Dock11-201,121114,Dock11-201;Dock11-203;Dock11-204,Dock11;Dock11;Dock11,0;0;-1432,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,75974,ENSMUSG00000031093,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4418,cg12830660,0.0000115,0.00000228,5.037370579,0.000000803,gain,yes,-0.00000936,0.00000387,-2.416585249,0.016244171,neg,ns,-0.002895515,0.001134265,-2.552768642,0.011166013,neg,ns,1.952101866,0.0000776,0.000039,1.990010625,0.047467894,pos,ns,0.95801332,Snd1,Snd1_Intron,6,28840695,28840744,28840695,28840696,50,+,CGCTTTTTGCTAATTAAAGAATGTTAGGACAATCACCACTAGCAGCAGTA,"Intron (Snd1-203/Snd1, intron 15 of 16)",6,28480348,28877723,397376,1,Snd1-203,360347,Snd1-203;Snd1-201;Snd1-206;Snd1-210;Snd1-209,Snd1;Snd1;Snd1;Snd1;Snd1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,9,56463,ENSMUSG00000001424,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5893,cg13704497,0.0000656,0.0000104,6.327498128,8.71E-10,gain,yes,-0.0000425,0.0000176,-2.415897603,0.016274297,neg,ns,0.017444064,0.005157131,3.382513625,0.000810399,pos,ns,3.091301113,-0.000581569,0.000177353,-3.279155845,0.001159627,neg,ns,0.151489432,Prrc2a,Prrc2a_fiveUTR,17,35162879,35162928,35162927,35162928,50,-,TTTCTGGATCTCTAAGGACTTGCCCTTATACGTATCAAACAGGTTGAGCG,5' UTR,17,35149076,35164897,15822,2,Prrc2a-201,1969,Prrc2a-201;Prrc2a-206;Prrc2a-203,Prrc2a;Prrc2a;Prrc2a,0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,13,53761,ENSMUSG00000024393,conserved gene but different region,17,35162847,35163042,196,*,196,12,0.556122449,0.8,0.06122449,0.000000472,CpGisland,TRUE,NA,NRS
10640,cg00923443,-0.00000668,0.0000103,-0.6459151,0.518812178,loss,ns,-0.0000425,0.0000176,-2.415881101,0.01627502,neg,ns,0.002515924,0.005148084,0.488710747,0.62539204,pos,ns,0.20384765,-0.0000165,0.000177042,-0.093184184,0.925817433,neg,ns,0.158232662,Gm7577,Gm7577_Promoter,15,54768396,54768445,54768444,54768445,50,+,TCTCTCTTTGTGTCTCCCCTATGTGAGAAATATGGCATGCACAATTGGCG,Promoter (2-3kb),15,54764532,54765513,982,2,Gm7577-201,-2883,Gm7577-201,Gm7577,-2883,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,2,665302,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13943,cg15818090,-0.00000441,0.00000591,-0.746703795,0.455808305,loss,ns,0.0000243,0.00001,2.41580418,0.016278393,pos,ns,0.005986492,0.002942725,2.034335964,0.042768648,pos,ns,1.368874482,-0.000208559,0.0001012,-2.06085397,0.040150864,neg,ns,0.910536878,Mex3c,Mex3c_threeUTR,18,73592243,73592292,73592291,73592292,50,+,CATTGTACACTGCAACTAATAAGCCAAGGAATCGACATATATTAGGTGCG,3' UTR,18,73573044,73592575,19532,1,Mex3c-201,19199,Mex3c-201,Mex3c,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,5,240396,ENSMUSG00000037253,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9194,cg19508325,0.0000569,0.00000817,6.963330091,1.99E-11,gain,yes,-0.0000335,0.0000139,-2.415566367,0.016288826,neg,ns,-0.013707711,0.004068386,-3.369324109,0.000848737,neg,ns,3.071227023,0.000298261,0.000139911,2.131785518,0.033810543,pos,ns,0.80334824,Cadm1,Cadm1_Intergenic_upstream,9,47506130,47506179,47506178,47506179,50,+,CTTGACAGGCGGAAACTGCAGCTTTCTCGTTAATGTGCAATCCTGAAACG,Distal Intergenic,9,47530173,47853385,323213,1,Cadm1-204,-23994,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,18,77,54725,ENSMUSG00000032076,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27483,cg25102951,0.000184793,0.0000111,16.66181836,5.87E-45,gain,yes,-0.0000455,0.0000188,-2.415476477,0.016292771,neg,ns,-0.010689164,0.005519997,-1.936443768,0.053722027,neg,ns,1.269847606,0.000652156,0.000189832,3.435431884,0.000672243,pos,ns,0.708020766,Pbx1,Pbx1_Intron,1,168357894,168357943,168357894,168357895,50,-,CGAATAAATGTTGATTAGTGTTGATTTTGTCCGACAAACGCCTGTCGAGT,"Intron (Pbx1-208/Pbx1, intron 2 of 7)",1,168119364,168432270,312907,2,Pbx1-208,74327,Pbx1-208;Pbx1-205;Pbx1-206;Pbx1-201;Pbx1-202;Pbx1-204,Pbx1;Pbx1;Pbx1;Pbx1;Pbx1;Pbx1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,84,18514,ENSMUSG00000052534,conserved gene and region,1,168357767,168357940,174,*,174,14,0.568965517,1.0875,0.08045977,1.09E-09,CpGisland,TRUE,U9,En-Pp
1464,cg12330929,0.000000543,0.00000577,0.09395445,0.925206036,gain,ns,-0.0000237,0.00000981,-2.415338582,0.016298824,neg,ns,0.001721436,0.002874007,0.598967404,0.549632065,pos,ns,0.259927939,-0.0000798,0.0000988,-0.807061456,0.420249845,neg,ns,0.62931742,Usp9x,Usp9x_fiveUTR,X,13094049,13094098,13094097,13094098,50,+,GACAAAATTGCAAAGATCTGCCCTGTGTCGAGTATGACAGCCACGACTCG,5' UTR,20,13071498,13123449,51952,1,Usp9x-206,22551,Usp9x-206;Usp9x-204;Usp9x-201,Usp9x;Usp9x;Usp9x,0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,10,22284,ENSMUSG00000031010,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8374,cg04918742,-0.0000334,0.00000997,-3.350067731,0.000907753,loss,ns,0.0000409,0.0000169,2.415185371,0.016305552,pos,ns,0.009558596,0.004961736,1.926462021,0.054960736,pos,ns,1.259947462,-0.000264962,0.000170634,-1.552813558,0.121487967,neg,ns,0.758461273,Zeb2,Zeb2_Intron,2,45059350,45059399,45059398,45059399,50,+,TGCAGGTGTGCAGGCCTGGGAACGTGCTCTAATTACATATTTTCCTGCCG,"Intron (Zeb2-212/Zeb2, intron 3 of 10)",2,44983632,45117395,133764,2,Zeb2-212,57996,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15792,cg13367787,0.00000408,0.00000746,0.546272158,0.585271801,gain,ns,0.0000306,0.0000127,2.414889947,0.016318531,pos,ns,-0.0000981,0.003715253,-0.02640539,0.978950985,neg,ns,0.009239052,-0.000104062,0.000127767,-0.814468229,0.416001985,neg,ns,0.736081393,Mef2c,Mef2c_Intergenic_upstream,13,83481488,83481537,83481488,83481489,50,+,CGTGGACAAGCTTGCCTTAATCACATTGCTCTTTTACATGTGCACAAGGA,Distal Intergenic,13,83504034,83663343,159310,1,Mef2c-218,-22497,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,41,17260,ENSMUSG00000005583,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7153,cg14096828,-0.000157955,0.0000141,-11.22193575,9.41E-25,loss,yes,0.0000577,0.0000239,2.414699411,0.016326908,pos,ns,0.039130088,0.007005571,5.585567413,0.000000051,pos,ns,7.292585155,-0.001569867,0.000240921,-6.516105031,2.92E-10,neg,yes,0.430393268,Immp2l,Immp2l_fiveUTR,12,41485971,41486020,41486019,41486020,50,+,GCGGTCATTAATAACTGAACACCCTCCACTCCCCAGAGAGGAGCCAATCG,5' UTR,12,41024090,41955588,931499,1,Immp2l-202,461881,Immp2l-202;Immp2l-203;Lrrn3-201,Immp2l;Immp2l;Lrrn3,0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,4,93757,ENSMUSG00000056899,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
21133,cg13674714,0.0000482,0.0000169,2.856233629,0.004576507,gain,ns,0.0000693,0.0000287,2.414689417,0.016327347,pos,ns,0.016977938,0.008407037,2.019491261,0.044296394,pos,ns,1.353631622,-0.000214422,0.000289117,-0.741643374,0.458864922,neg,ns,0.436545059,Gm17053,Gm17053_Intergenic_downstream,12,106528695,106528744,106528743,106528744,50,-,ATTGTTGAACAGATGTAAGTGTTGGAGACTCGGCTCTGGCAGACCTCACG,Distal Intergenic,12,106544837,106546326,1490,2,Gm17053-201,17631,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,6,108167962,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22184,cg06416568,0.0000599,0.0000162,3.702850371,0.000252297,gain,ns,0.0000663,0.0000275,2.414520104,0.016334794,pos,ns,0.020113618,0.008047442,2.499380299,0.012957945,pos,ns,1.887463871,-0.0000362,0.000276751,-0.130904774,0.895935547,neg,ns,0.47532311,Slitrk5,Slitrk5_Exon,14,111680377,111680426,111680425,111680426,50,+,TATGGCCTGCAGAGCCTGCAGTATCTCTTCCTCCAGTACAATCTCATCCG,"Exon (Slitrk5-201/Slitrk5, exon 2 of 2)",14,111675097,111683141,8045,1,Slitrk5-201,5280,Slitrk5-201;Slitrk5-202,Slitrk5;Slitrk5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,10,75409,ENSMUSG00000033214,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
13976,cg03481356,-0.00000727,0.00000893,-0.814122941,0.416199443,loss,ns,-0.0000366,0.0000152,-2.4140394,0.016355952,neg,ns,-0.004399501,0.00444349,-0.990100463,0.322897183,neg,ns,0.490935743,-0.000143574,0.000152811,-0.939550076,0.348179886,neg,ns,0.905405019,Mapk4,Mapk4_Exon,18,73969929,73969978,73969929,73969930,50,+,CGAAATCCCCAATCTTGAGCACGAGGTCCTCTGTGCTGATGAAGATGTTG,"Exon (Mapk4-204/Mapk4, exon 2 of 5)",18,73928486,74064392,135907,2,Mapk4-204,94414,Mapk4-204;Mapk4-201;Mapk4-202;Mapk4-203,Mapk4;Mapk4;Mapk4;Mapk4,0;0;0;95381,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,225724,ENSMUSG00000024558,conserved gene and region,18,73969914,73970413,500,*,500,32,0.584,0.754895022,0.064,1.98E-18,CpGisland,TRUE,U11,Tr-P
3234,cg03472700,-0.00000313,0.00000188,-1.663462487,0.097230452,loss,ns,0.00000772,0.0000032,2.413410855,0.016383654,pos,ns,0.002831555,0.00093714,3.021484603,0.002724942,pos,ns,2.564642714,-0.0000714,0.0000322,-2.216924275,0.0273536,neg,ns,0.960999797,Xpo1,Xpo1_threeUTR,11,23296183,23296232,23296183,23296184,50,-,CGACCAAAATGATGCCAATTTGTAAATTAAAATGTCACCTAGTGGCCCTT,3' UTR,11,23256041,23297597,41557,1,Xpo1-201,40142,Xpo1-201;Xpo1-204;Xpo1-203;Xpo1-202,Xpo1;Xpo1;Xpo1;Xpo1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,14,103573,ENSMUSG00000020290,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13799,cg09670972,0.00000733,0.00000405,1.810489159,0.071188037,gain,ns,-0.0000166,0.00000688,-2.413325836,0.016387404,neg,ns,-0.004770673,0.00201549,-2.367004639,0.018546821,neg,ns,1.731730517,0.000123761,0.0000693,1.785555332,0.075148759,pos,ns,0.906137749,Ypel5,Ypel5_Exon,17,72848613,72848662,72848613,72848614,50,-,CGGGTCATGCTCACTGGCCGCCACATGGTTCGAGATGTGAGCTGCAAAAA,"Exon (Ypel5-201/Ypel5, exon 3 of 3)",17,72836453,72851195,14743,1,Ypel5-201,12160,Ypel5-201;Ypel5-202;Ypel5-205;Ypel5-203;Ypel5-204,Ypel5;Ypel5;Ypel5;Ypel5;Ypel5,0;0;0;10242;7682,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,383295,ENSMUSG00000039770,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26324,cg20787552,0.0000361,0.0000105,3.428154852,0.00068984,gain,ns,0.0000431,0.0000179,2.413117287,0.016396606,pos,ns,0.011626529,0.00523656,2.220260818,0.027123969,pos,ns,1.56664676,-0.000107072,0.000180085,-0.59456174,0.552570146,neg,ns,0.641194201,Gm14111,Gm14111_Intergenic_downstream,2,146745573,146745622,146745621,146745622,50,-,CCTCCGAATGTAGACTAATAAGCCCAGAAATTACAATTGCCTCCCTGCCG,Distal Intergenic,2,146754707,146755705,999,2,Gm14111-201,10132,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,15,17,668918,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11245,cg21226516,0.000104667,0.00000826,12.66912112,6.31E-30,gain,yes,0.0000339,0.000014,2.412797825,0.016410712,pos,ns,0.020227527,0.004111862,4.919310619,0.00000141,pos,ns,5.850152051,0.0000182,0.000141407,0.128756373,0.89763392,pos,ns,0.452800518,Nr4a2,Nr4a2_fiveUTR,2,57112407,57112456,57112407,57112408,50,+,CGAGGACCCATACTGCGCCTGAACACAAGGCATGGCTGGAAATGAAACAG,5' UTR,2,57106830,57115038,8209,2,Nr4a2-201,2582,Nr4a2-201;Nr4a2-203;Nr4a2-206;Nr4a2-202;Nr4a2-205;Nr4a2-204,Nr4a2;Nr4a2;Nr4a2;Nr4a2;Nr4a2;Nr4a2,0;0;0;0;0;1917,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,25,18227,ENSMUSG00000026826,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
16617,cg11230022,0.000000788,0.00000385,0.204696134,0.837943871,gain,ns,-0.0000158,0.00000654,-2.412599688,0.016419465,neg,ns,0.001094497,0.001914793,0.571600642,0.568006762,pos,ns,0.245646494,-0.0000435,0.0000658,-0.660068969,0.509699693,neg,ns,0.947133717,Btbd11,Btbd11_Exon,10,85629273,85629322,85629321,85629322,50,-,TGACTTTTGCTGTGTTGCATGGACATATTCCTGTAGTTCAGGTATTAACG,"Exon (Btbd11-203/Btbd11, exon 7 of 17)",10,85386814,85660292,273479,1,Btbd11-203,242459,Btbd11-203;Btbd11-201;Btbd11-202;Btbd11-206,Btbd11;Btbd11;Btbd11;Btbd11,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,13,13,74007,ENSMUSG00000020042,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2727,cg13260139,-0.00000601,0.00000303,-1.984598785,0.048070464,loss,ns,0.0000124,0.00000515,2.412189836,0.016437586,pos,ns,0.005760208,0.001508377,3.818811798,0.000161959,pos,ns,3.790595612,-0.000189796,0.0000519,-3.65885806,0.000297639,neg,ns,0.935129019,Kat6b,Kat6b_Exon,14,21625158,21625207,21625158,21625159,50,-,CGTCCAAGGAAAAAGGTCTCTCAGAAACAGTCATGCACTTCTCATGTGTT,"Exon (Kat6b-201/Kat6b, exon 7 of 17)",14,21499770,21672071,172302,1,Kat6b-206,125388,Kat6b-211;Kat6b-206;Kat6b-204;Kat6b-201;Kat6b-202;Kat6b-208;Kat6b-210;Kat6b-203;Kat6b-214;Kat6b-205;Kat6b-213,Kat6b;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,21,54169,ENSMUSG00000021767,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24172,cg02974766,0.0000826,0.0000269,3.07670008,0.002279758,gain,ns,-0.000110054,0.0000456,-2.412185572,0.016437775,neg,ns,0.056807816,0.013366373,4.25005475,0.0000283,pos,ns,4.548082918,-0.00252225,0.000459668,-5.487107364,0.000000085,neg,yes,0.782019659,Setd1b,Setd1b_threeUTR,5,123168587,123168636,123168635,123168636,50,-,TAACTTTTATAAAGCAAACCATAAATATACTGACTTTTCTTACAGATACG,3' UTR,5,123142193,123168629,26437,1,Setd1b-204,26394,Hpd-201;Hpd-205;Hpd-203;Psmd9-206;Setd1b-206;Setd1b-204;Setd1b-201;Setd1b-205;Setd1b-203,Hpd;Hpd;Hpd;Psmd9;Setd1b;Setd1b;Setd1b;Setd1b;Setd1b,14091;4275;7279;-777;0;0;25630;5878;5206,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,9,208043,ENSMUSG00000038384,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10282,cg27188233,-0.000000213,0.0000021,-0.101370065,0.919322232,loss,ns,0.00000859,0.00000356,2.412127905,0.016440326,pos,ns,0.002834693,0.001043631,2.716183997,0.00697457,pos,ns,2.15648259,-0.0000915,0.0000359,-2.548045629,0.011315109,neg,ns,0.96122005,Kcnh8,Kcnh8_Intron,17,52460146,52460195,52460194,52460195,50,-,CTAACATATACCACATCATTTGCACGTCTGCAAGTACACGTGAGTAACCG,"Intron (Gm5094-201/Gm5094-201, intron 1 of 2)",17,52602709,52979194,376486,1,Kcnh8-201,-142563,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,8,211468,ENSMUSG00000035580,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13982,cg21858349,-0.0000141,0.00000655,-2.148210354,0.032471632,loss,ns,0.0000269,0.0000111,2.412104239,0.016441373,pos,ns,0.009843285,0.003262276,3.017306103,0.002761687,pos,ns,2.558825583,-0.000173514,0.000112189,-1.546617264,0.122975793,neg,ns,0.83013319,Mecp2,Mecp2_threeUTR,X,74026898,74026947,74026898,74026899,50,-,CGTATACAGGTACATTCAGACAGGTTTACTGAAATGGTACAAATTTCCTT,3' UTR,20,74026592,74085669,59078,2,Mecp2-202,58722,Irak1-206;Irak1-204;Irak1-202;Irak1-207;Irak1-220;Irak1-222;Irak1-201;Irak1-203;Irak1-205;Irak1-210;Irak1-215;Irak1-213;Irak1-209;Irak1-208;Irak1-221;Irak1-217;Irak1-218;Irak1-216;Irak1-212;Mecp2-202;Mecp2-205,Irak1;Irak1;Irak1;Irak1;Irak1;Irak1;Irak1;Irak1;Irak1;Irak1;Irak1;Irak1;Irak1;Irak1;Irak1;Irak1;Irak1;Irak1;Irak1;Mecp2;Mecp2,0;0;0;0;0;0;0;0;0;-4402;-4247;-3807;-3725;-3954;0;0;-3522;-3390;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,10,17257,ENSMUSG00000031393,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17709,cg19956872,0.0000177,0.000023,0.769012701,0.442471266,gain,ns,0.0000941,0.000039,2.411590961,0.016464096,pos,ns,-0.002114995,0.011435248,-0.18495401,0.853386051,neg,ns,0.06885446,0.000798275,0.000393257,2.02990436,0.043219969,pos,ns,0.194145089,Zic4,Zic4_Intergenic_downstream,9,91404304,91404353,91404304,91404305,50,+,CGACTAAACAGATGAATAACGAGCAAAGTCTCCCGAAAGTAAGCTAGCAG,Distal Intergenic,9,91382410,91388044,5635,1,Zic4-202,21894,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,55,22774,ENSMUSG00000036972,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
17499,cg25027030,0.0000285,0.0000115,2.481179173,0.013624863,gain,ns,0.000047,0.0000195,2.4115892,0.016464174,pos,ns,0.01480523,0.005712177,2.591871773,0.009997433,pos,ns,2.000111512,-0.000346744,0.000196441,-1.765129308,0.078526572,neg,ns,0.583596917,Chtop,Chtop_fiveUTR,3,90507544,90507593,90507592,90507593,50,-,CCGCTCATTTAGAGACATCTTGGTGGTGCTTTTTAGCACAACTTTCGGCG,5' UTR,3,90498956,90509450,10495,2,Chtop-205,1857,Chtop-205;Chtop-201;Chtop-206;Chtop-203;Chtop-202;Chtop-207;Chtop-204;Chtop-209;Chtop-208;S100a1-201;S100a1-202,Chtop;Chtop;Chtop;Chtop;Chtop;Chtop;Chtop;Chtop;Chtop;S100a1;S100a1,0;0;0;0;0;0;0;0;0;6799;6685,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,10,66511,ENSMUSG00000001017,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24698,cg06945527,-0.0000109,0.00000605,-1.799266776,0.0729489,loss,ns,-0.0000248,0.0000103,-2.411174946,0.016482533,neg,ns,-0.008322938,0.003008787,-2.766210454,0.006011506,neg,ns,2.221016705,0.0000768,0.000103472,0.742665066,0.458246867,pos,ns,0.83487883,Prmt8,Prmt8_Exon,6,127689851,127689900,127689899,127689900,50,-,CAGATGTTTCACACAGCTGTCCCTTAAAATCCAAGTCTACTGTGAAATCG,"Exon (Prmt8-201/Prmt8, exon 10 of 10)",6,127689011,127769472,80462,2,Prmt8-201,79572,Prmt8-201,Prmt8,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,381813,ENSMUSG00000030350,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7729,cg08621199,-0.00000389,0.0000028,-1.387615586,0.166250752,loss,ns,0.0000115,0.00000476,2.411111633,0.016485341,pos,ns,0.002227553,0.001394776,1.597068431,0.111269267,pos,ns,0.953624771,-0.0000718,0.000048,-1.496346123,0.135580859,neg,ns,0.944073958,Arhgap15,Arhgap15_Intron,2,43986671,43986720,43986719,43986720,50,+,TATAATATGTAAAGTGAATGGCATTGTTAATCACAGTCGCGCCTGGAACG,"Intron (Arhgap15-203/Arhgap15, intron 6 of 14)",2,43748824,44395953,647130,1,Arhgap15-203,237847,Arhgap15-203;Arhgap15-202;Arhgap15-201,Arhgap15;Arhgap15;Arhgap15,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,72,78,76117,ENSMUSG00000049744,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18081,cg01939220,0.000013,0.00000305,4.254385096,0.0000278,gain,ns,-0.0000125,0.00000519,-2.410630637,0.016506684,neg,ns,-0.000743521,0.001519863,-0.48920268,0.625044158,neg,ns,0.2040893,0.0000303,0.0000523,0.579291203,0.562813408,pos,ns,0.945210212,Magi1,Magi1_Exon,6,93680789,93680838,93680789,93680790,50,+,CGTAGTTTGATTATGGCCCATAAGGTAGAAGCAAGCCTCCCCGAGCTTTT,"Exon (Magi1-201/Magi1, exon 21 of 22)",6,93675455,94283322,607868,2,Magi1-201,602484,Magi1-201;Magi1-202;Magi1-208;Magi1-203;Magi1-206;Magi1-209;Magi1-205,Magi1;Magi1;Magi1;Magi1;Magi1;Magi1;Magi1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,18,14924,ENSMUSG00000045095,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27092,cg20378129,0.0000878,0.0000156,5.632856497,3.98E-08,gain,yes,-0.0000638,0.0000265,-2.410594752,0.016508277,neg,ns,0.04228786,0.007754405,5.453398705,0.000000101,pos,ns,6.995237642,-0.001381678,0.000266673,-5.181162918,0.000000398,neg,yes,0.466998325,Srsf11,Srsf11_threeUTR,3,158023241,158023290,158023289,158023290,50,+,ACCTGTACTCGATTTTTAAGTCATGAACCAAACGTAAGCAAGCACAGTCG,3' UTR,3,158010473,158036639,26167,2,Srsf11-204,13349,Srsf11-204;Srsf11-213;Srsf11-202;Srsf11-207;Srsf11-201;Srsf11-217;Srsf11-218;Srsf11-206;Srsf11-209;Srsf11-210;Srsf11-212;Srsf11-203;Srsf11-208;Srsf11-215,Srsf11;Srsf11;Srsf11;Srsf11;Srsf11;Srsf11;Srsf11;Srsf11;Srsf11;Srsf11;Srsf11;Srsf11;Srsf11;Srsf11,0;0;0;-101;0;-1237;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,8,69207,ENSMUSG00000055436,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23971,cg02977776,-0.0000182,0.00000407,-4.478740296,0.0000106,loss,ns,-0.0000167,0.00000692,-2.410543071,0.016510572,neg,ns,0.002944887,0.002026878,1.4529183,0.14725791,pos,ns,0.831921369,-0.000178766,0.0000697,-2.564633857,0.01079916,neg,ns,0.901420127,Adam1a,Adam1a_Exon,5,121539170,121539219,121539218,121539219,50,+,ACCTCATTTCTAGCTTTTGGACGATCAAGAAGAATTTTCAGCGCAAACCG,"Exon (Adam1a-202/Adam1a, exon 3 of 15)",5,121518613,121545482,26870,2,Adam1a-202,6263,Adam1a-202;Gm42878-201;Mapkapk5-201;Mapkapk5-204;Mapkapk5-202;Mapkapk5-203;Mapkapk5-205;Mapkapk5-211;Mapkapk5-209;Mapkapk5-213;Mapkapk5-208,Adam1a;Gm42878;Mapkapk5;Mapkapk5;Mapkapk5;Mapkapk5;Mapkapk5;Mapkapk5;Mapkapk5;Mapkapk5;Mapkapk5,0;0;0;0;0;0;0;0;-3319;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,280668,ENSMUSG00000072647,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13659,cg16976468,-0.00000723,0.00000584,-1.238547396,0.216450198,loss,ns,0.0000239,0.00000991,2.410322952,0.016520349,pos,ns,0.002957995,0.002904547,1.018401528,0.309281306,pos,ns,0.50964633,-0.000107444,0.0000999,-1.075656117,0.282917523,neg,ns,0.894131363,Irx1,Irx1_Intron,13,71818690,71818739,71818690,71818691,50,-,CGACAAATTCACAATTCAATATGAGAGGTAAGGGTGCCTGAAGATGCCCT,"Intron (Gm40999-201/Gm40999-201, intron 1 of 7)",13,71958660,71959433,774,2,Irx1-202,140743,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,8,16371,ENSMUSG00000060969,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15124,cg08508546,-0.00000527,0.0000108,-0.48903557,0.625162324,loss,ns,0.0000441,0.0000183,2.410169674,0.016527161,pos,ns,0.006495417,0.005365808,1.21051978,0.227001641,pos,ns,0.643971004,-0.000285858,0.00018453,-1.549116121,0.122374067,neg,ns,0.5397493,Gm48470,Gm48470_Intergenic_downstream,13,79255564,79255613,79255612,79255613,50,+,TTGGGGTTGGTAAAAGGTCACAGCTGACAGACACGGAGGTTAAACTGCCG,Distal Intergenic,13,79441143,79441407,265,2,Gm48470-201,185794,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,20,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10915,cg25696171,-0.0000105,0.00000464,-2.271757743,0.023786161,loss,ns,0.000019,0.00000788,2.410165556,0.016527344,pos,ns,0.002835077,0.002307794,1.228479283,0.220198913,pos,ns,0.657184829,-0.0000369,0.0000794,-0.465004202,0.642254905,neg,ns,0.913496011,Tcf7l2,Tcf7l2_Intron,19,55887840,55887889,55887888,55887889,50,-,GAACGCATTCAGAACTGGAGAATAGATTTACCCTTGGCTTCAAATAGTCG,"Intron (Tcf7l2-213/Tcf7l2, intron 4 of 13)",19,55741820,55933229,191410,1,Tcf7l2-213,146020,Tcf7l2-213;Tcf7l2-201;Tcf7l2-208;Tcf7l2-211;Tcf7l2-212;Tcf7l2-206;Tcf7l2-204;Tcf7l2-205;Tcf7l2-222;Tcf7l2-215;Tcf7l2-214;Tcf7l2-207;Tcf7l2-202;Tcf7l2-209;Tcf7l2-210;Tcf7l2-217,Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,55,88,21416,ENSMUSG00000024985,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4738,cg04913399,0.0000287,0.00000812,3.538443604,0.000464105,gain,ns,-0.0000333,0.0000138,-2.40990307,0.016539014,neg,ns,0.002668911,0.004042985,0.660133632,0.509658257,pos,ns,0.292720936,-0.000057,0.000139038,-0.41009966,0.68201611,neg,ns,0.880831661,Cacna1d,Cacna1d_Exon,14,30350715,30350764,30350763,30350764,50,-,CGGCTGTTGGACGAGTTACCCTGTTTTTTGCTCTTGGCGTATTGCTGACG,"Exon (Cacna1d-202/Cacna1d, exon 2 of 47)",14,30039941,30491453,451513,2,Cacna1d-202,140689,Cacna1d-202;Cacna1d-201;Cacna1d-208;Cacna1d-209;Cacna1d-214;Cacna1d-204;Cacna1d-207;Cacna1d-218;Cacna1d-216;Cacna1d-205,Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,26,12289,ENSMUSG00000015968,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12877,cg22380921,0.000239506,0.0000152,15.75354972,1.75E-41,gain,yes,-0.0000622,0.0000258,-2.409382403,0.016562185,neg,ns,-0.000741431,0.007566849,-0.097984153,0.9220082,neg,ns,0.035265217,0.000458223,0.000260223,1.760885299,0.079243748,pos,ns,0.160369092,Cadm2,Cadm2_Exon,16,67620155,67620204,67620203,67620204,50,-,CCGGGGCGGGGATTACCTTGTAGCAGGAGCCCGCAGACACTGTAGAAGCG,Promoter (<=1kb),16,66655421,67620908,965488,2,Cadm2-201,704,Cadm2-201;Cadm2-202;Cadm2-203;Cadm2-204,Cadm2;Cadm2;Cadm2;Cadm2,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,9,239857,ENSMUSG00000064115,conserved gene and region,16,67619938,67620219,282,*,282,19,0.641843972,0.693322981,0.067375887,1.37E-11,CpGisland,TRUE,U3,Pr-B
7025,cg04424997,-0.000015,0.00000314,-4.780138314,0.00000271,loss,ns,0.0000129,0.00000534,2.409065603,0.016576298,pos,ns,-0.000167947,0.001565068,-0.107309916,0.914612533,neg,ns,0.038762852,-0.000036,0.0000538,-0.668818588,0.504108944,neg,ns,0.935026418,Lrp1b,Lrp1b_Exon,2,40697514,40697563,40697514,40697515,50,+,CGCCACTGTAGTTGAATGGATATATAAAACCCAGGATATCAGTGTCATTA,"Exon (Lrp1b-201/Lrp1b, exon 77 of 91)",2,40595248,42653624,2058377,2,Lrp1b-201,1956061,Lrp1b-201;Lrp1b-206;Lrp1b-204,Lrp1b;Lrp1b;Lrp1b,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,7,94217,ENSMUSG00000049252,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13611,cg19789513,0.00000439,0.000000669,6.573401327,2.08E-10,gain,yes,-0.00000274,0.00000114,-2.408685257,0.016593255,neg,ns,0.000392401,0.00033276,1.179232177,0.239209976,pos,ns,0.621220713,0.000000292,0.0000114,0.02554054,0.979640246,pos,ns,0.013631152,Dlx1,Dlx1_Exon,2,71530190,71530239,71530190,71530191,50,-,CGCTGGGCTACCCCTACGTCAACTCGGTCAGCAGCCACGCATCCAGCCCC,"Exon (Dlx1-201/Dlx1, exon 1 of 3)",2,71528113,71533980,5868,1,Dlx1-201,2077,Dlx1-201;Dlx1-202;Dlx1-205;Dlx1-204;Dlx1-203;Dlx1-206;Metap1d-201;Metap1d-205,Dlx1;Dlx1;Dlx1;Dlx1;Dlx1;Dlx1;Metap1d;Metap1d,0;0;0;0;0;-541;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,Exon,6,36,13390,ENSMUSG00000041911,conserved gene and region,2,71530032,71530315,284,*,284,23,0.64084507,0.820912404,0.080985916,1.08E-15,CpGisland,TRUE,U3,Pr-B
22241,cg09502277,0.0000262,0.00000963,2.7195836,0.006904959,gain,ns,-0.0000394,0.0000164,-2.408452551,0.016603637,neg,ns,-0.012878826,0.00479288,-2.687074756,0.007597036,neg,ns,2.119355795,0.000267143,0.000164827,1.620750149,0.106087925,pos,ns,0.80527039,Gm11679,Gm11679_Intergenic_upstream,11,112239467,112239516,112239467,112239468,50,+,CGCTCCCTGACATTTATTGAAACCTCAGACCCTGTGCACTGGTTTCAGTT,Distal Intergenic,11,112042800,112043578,779,2,Gm11679-201,-195889,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,7,100504331,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6149,cg02215504,-0.0000484,0.0000184,-2.626240984,0.009062029,loss,ns,0.0000753,0.0000313,2.407591385,0.016642109,pos,ns,0.009552011,0.009168392,1.041841532,0.298296972,pos,ns,0.525351156,-0.00048683,0.0003153,-1.544019358,0.123603829,neg,ns,0.637067252,Tenm2,Tenm2_Intron,11,36152850,36152899,36152850,36152851,50,-,CGATAAATTAAAAGTGCACAGATGTTTTAATTAAACCCAGGGAAGTTAAC,"Intron (Tenm2-202/Tenm2, intron 11 of 30)",11,36006656,37235882,1229227,2,Tenm2-202,1082983,Tenm2-202;Tenm2-208;Tenm2-201;Tenm2-204;Tenm2-205,Tenm2;Tenm2;Tenm2;Tenm2;Tenm2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,47,84,23964,ENSMUSG00000049336,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6212,cg25196836,0.0000151,0.00000848,1.785528933,0.075153046,gain,ns,0.0000347,0.0000144,2.407428071,0.016649414,pos,ns,-0.004954878,0.004219425,-1.174301659,0.241175521,neg,ns,0.617666775,0.000195399,0.000145106,1.346598766,0.179093187,pos,ns,0.673392292,Tenm2,Tenm2_Intron,11,36331677,36331726,36331677,36331678,50,-,CGAGGGAGATAAGAGAAGTGACACAGATTAAAACAAATTGTTGATCCATA,"Intron (Tenm2-202/Tenm2, intron 5 of 30)",11,36006656,37235882,1229227,2,Tenm2-202,904156,Tenm2-202;Tenm2-208;Tenm2-201;Tenm2-204;Tenm2-205;Tenm2-206,Tenm2;Tenm2;Tenm2;Tenm2;Tenm2;Tenm2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,47,84,23964,ENSMUSG00000049336,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2544,cg20388672,0.000158162,0.0000177,8.916711863,4.23E-17,gain,yes,0.0000725,0.0000301,2.407336674,0.016653503,pos,ns,-0.020344559,0.008828264,-2.304480207,0.021856412,neg,ns,1.660421139,0.001341344,0.000303603,4.418081601,0.0000138,pos,ns,0.503857019,Elmo1,Elmo1_Intron,13,20472583,20472632,20472631,20472632,50,-,TGCAGTTGATTATGGGTCTGGCAGCAGATGTTCTGCACGAATCCAACTCG,"Intron (Elmo1-201/Elmo1, intron 16 of 21)",13,20090619,20608353,517735,1,Elmo1-201,381964,Elmo1-201;Elmo1-203,Elmo1;Elmo1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,4,140580,ENSMUSG00000041112,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10741,cg09659969,-0.0000363,0.00000645,-5.63361191,3.96E-08,loss,yes,0.0000264,0.000011,2.407074229,0.01666525,pos,ns,0.002250936,0.003209312,0.701376338,0.483594359,pos,ns,0.315518773,1.97E-08,0.000110368,0.000178423,0.999857754,pos,ns,0.845877363,Zfhx2,Zfhx2_Exon,14,55078750,55078799,55078750,55078751,50,-,CGACAGAGAGAGCTTTAAATTACAAGGCTGCTGCCACTGAGGGGGATGGG,"Exon (Zfhx2-203/Zfhx2, exon 1 of 1)",14,55060262,55092324,32063,2,Zfhx2-201,13525,Zfhx2-201;Zfhx2-203,Zfhx2;Zfhx2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,8,239102,ENSMUSG00000040721,mapped to different genes,14,55078646,55078934,289,*,289,17,0.598615917,0.675605061,0.058823529,1.66E-09,CpGisland,TRUE,U3,Pr-B
10068,cg01655447,0.0000137,0.0000037,3.714524699,0.000241406,gain,ns,0.0000151,0.00000628,2.406998471,0.016668642,pos,ns,0.014540567,0.001840096,7.902069738,4.83E-14,pos,yes,13.31611475,-0.000248688,0.0000633,-3.929908465,0.000104834,neg,ns,0.924270182,Dhx15,Dhx15_threeUTR,5,52150704,52150753,52150704,52150705,50,+,CGGTCCAACTGTCTCTTTGCTTCACACTGTGGGAAATTGCTCATGTCATA,3' UTR,5,52150203,52190514,40312,2,Dhx15-201,39761,Dhx15-201;Dhx15-207;Dhx15-206;Dhx15-205,Dhx15;Dhx15;Dhx15;Dhx15,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,14,13204,ENSMUSG00000029169,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2692,cg20059946,0.00000109,0.00000312,0.34939318,0.727031374,gain,ns,-0.0000128,0.0000053,-2.406943798,0.016671091,neg,ns,-0.003028796,0.001553411,-1.949770964,0.052104745,neg,ns,1.283122725,0.0000342,0.0000534,0.639341529,0.523072925,pos,ns,0.917754469,Ilf3,Ilf3_Exon,9,21393739,21393788,21393787,21393788,50,+,CGTTCTGGACAGGCAGAAATGCCTTGCTGCCTTGGCGTCCCTCCGACACG,"Exon (Ilf3-201/Ilf3, exon 6 of 20)",9,21367871,21405360,37490,1,Ilf3-201,25868,Ilf3-201;Ilf3-203;Ilf3-206;Ilf3-213;Ilf3-210;Ilf3-202;Ilf3-204;Ilf3-208;Ilf3-209;Ilf3-216;Ilf3-211,Ilf3;Ilf3;Ilf3;Ilf3;Ilf3;Ilf3;Ilf3;Ilf3;Ilf3;Ilf3;Ilf3,0;0;0;0;25736;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,11,16201,ENSMUSG00000032178,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18119,cg16475558,0.0000301,0.0000106,2.844508331,0.004743846,gain,ns,-0.0000432,0.000018,-2.406795537,0.016677732,neg,ns,0.00044568,0.005261133,0.084711714,0.932545264,pos,ns,0.030330079,-0.000138165,0.00018093,-0.763636428,0.445664716,neg,ns,0.726270133,Gnao1,Gnao1_threeUTR,8,93967035,93967084,93967035,93967036,50,-,CGGGGCTGCGGCTTGTACTGACCTCTTGTCCTGTATAGCAACCTATTTGG,3' UTR,8,93810838,93969388,158551,1,Gnao1-201,156197,Amfr-201;Gnao1-201;Gnao1-203;Gnao1-204;Gnao1-208;Gnao1-210;Gnao1-211;Gnao1-212,Amfr;Gnao1;Gnao1;Gnao1;Gnao1;Gnao1;Gnao1;Gnao1,45758;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,TRUE,FALSE,threeUTR,5,13,14681,ENSMUSG00000031748,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2409,cg10427592,-0.000000772,0.000000959,-0.805095562,0.42138159,loss,ns,0.00000392,0.00000163,2.406684074,0.016682727,pos,ns,-0.000462158,0.000477174,-0.968533342,0.333533099,neg,ns,0.476861062,0.0000055,0.0000164,0.335155821,0.737734227,pos,ns,0.989456914,Fosb,Fosb_Exon,7,19307413,19307462,19307413,19307414,50,+,CGGGCATTTCCCCGAGACCGGCGCACTCCTACGGGGTGACACATACACAC,"Exon (Fosb-201/Fosb, exon 2 of 4)",7,19302696,19310051,7356,2,Fosb-201,2589,Fosb-201;Fosb-202;Fosb-203;Fosb-205;Fosb-207;Fosb-206;Fosb-204,Fosb;Fosb;Fosb;Fosb;Fosb;Fosb;Fosb,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,13,14282,ENSMUSG00000003545,mapped to different genes,7,19307356,19307554,199,*,199,14,0.592964824,0.806134259,0.070351759,6.46E-09,CpGisland,TRUE,U13,Hc-P
6488,cg02615877,0.00000972,0.00000276,3.526090084,0.000485417,gain,ns,-0.0000113,0.00000468,-2.406618728,0.016685656,neg,ns,0.000812853,0.001371392,0.592720988,0.553800009,pos,ns,0.256647041,-0.00024645,0.0000472,-5.225606373,0.000000319,neg,yes,0.039495117,Msantd2,Msantd2_Promoter,9,37489995,37490044,37490043,37490044,50,+,TTTCCCAGATGGCCGCCAGCCCGTAGGTTTCCTGAGTTTGAAGTTGGGCG,Promoter (<=1kb),9,37489021,37524150,35130,1,Msantd2-209,974,Msantd2-209;Msantd2-204;Msantd2-210;Msantd2-201;Msantd2-202;Msantd2-208;Msantd2-205;Msantd2-203;Msantd2-206,Msantd2;Msantd2;Msantd2;Msantd2;Msantd2;Msantd2;Msantd2;Msantd2;Msantd2,0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,2,8,235184,ENSMUSG00000042138,conserved gene but different region,9,37489051,37490155,1105,*,1105,120,0.717647059,0.844575228,0.108597285,1.63E-95,CpGisland,TRUE,U4,Pr-F
17848,cg01857777,-0.00000276,0.00000429,-0.644230809,0.519902154,loss,ns,0.0000175,0.00000728,2.406580238,0.016687381,pos,ns,0.005276082,0.002133993,2.472399355,0.013957331,pos,ns,1.855197619,-0.0000905,0.0000734,-1.233326361,0.218388372,neg,ns,0.534688345,Gm8512,Gm8512_Intron,10,92075834,92075883,92075834,92075835,50,-,CGCAGCTGCTTTTTAAGCTACAGATAAATAGAATCTGCTAGGCGGTAATT,"Intron (Rmst-205/Rmst-205, intron 2 of 4)",10,92223004,92223474,471,2,Gm8512-201,147640,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,5,667203,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8543,cg16222297,0.0000161,0.0000104,1.54859204,0.122500074,gain,ns,0.0000425,0.0000177,2.406492567,0.016691311,pos,ns,0.008765626,0.005171412,1.695015892,0.09107657,pos,ns,1.040593333,-0.000170635,0.000177844,-0.959462535,0.338073501,neg,ns,0.805678048,Trpm4,Trpm4_threeUTR,7,45319289,45319338,45319289,45319290,50,-,CGCGGTTCCAAGCCACAGCCAAACGCAGCTCATCCAGGTAGGCTGAGGCC,3' UTR,7,45302632,45333768,31137,2,Trpm4-208,14430,Trpm4-208;Trpm4-201;Trpm4-209,Trpm4;Trpm4;Trpm4,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,68667,ENSMUSG00000038260,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11243,cg00673150,0.0000992,0.0000101,9.807829025,5.91E-20,gain,yes,0.0000413,0.0000172,2.40629638,0.01670011,pos,ns,0.021317418,0.00503312,4.235428264,0.0000301,pos,ns,4.521328523,0.000011,0.000173089,0.06359695,0.949332148,pos,ns,0.257014112,Nr4a2,Nr4a2_Exon,2,57112311,57112360,57112359,57112360,50,-,GCTAAACTTGACAAACTCTGGAGTTAAGAAATCGGAGCTGTATTCTCCCG,"Exon (Nr4a2-201/Nr4a2, exon 3 of 8)",2,57106830,57115038,8209,2,Nr4a2-201,2678,Nr4a2-201;Nr4a2-203;Nr4a2-206;Nr4a2-202;Nr4a2-205;Nr4a2-204,Nr4a2;Nr4a2;Nr4a2;Nr4a2;Nr4a2;Nr4a2,0;0;0;0;0;2013,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,25,18227,ENSMUSG00000026826,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
27013,cg00131490,0.00000597,0.00000742,0.805046957,0.421409595,gain,ns,-0.0000303,0.0000126,-2.406166496,0.016705937,neg,ns,0.005510059,0.003693572,1.49179677,0.136769339,pos,ns,0.864011251,-0.000305773,0.000127022,-2.407247347,0.0166575,neg,ns,0.114536277,Rbm39,Rbm39_threeUTR,2,156177759,156177808,156177807,156177808,50,-,CTATTTCTGCCTAAGCCCCAAGTGGCCATGCTAGCAGCCAGCCACTATCG,3' UTR,2,156147239,156180238,33000,2,Rbm39-203,2430,Rbm39-203;Rbm39-217;Rbm39-215;Rbm39-201;Rbm39-225;Rbm39-223;Rbm39-204;Rbm39-216;Rbm39-221;Rbm39-213;Rbm39-214;Rbm39-218;Rbm39-219;Rbm39-210;Rbm39-224;Rbm39-212;Rbm39-202;Rbm39-208;Rbm39-222;Rbm39-205;Rbm39-211,Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,11,13,170791,ENSMUSG00000027620,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U4,Pr-F
5577,cg21142636,-0.00000826,0.00000841,-0.981617832,0.327053623,loss,ns,-0.0000344,0.0000143,-2.405630553,0.01673,neg,ns,-0.004692438,0.004187591,-1.120557743,0.263343504,neg,ns,0.57947739,-0.00000124,0.000144011,-0.008587669,0.99315364,neg,ns,0.847423473,4931406P16Rik,4931406P16Rik_Exon,7,34285098,34285147,34285098,34285099,50,+,CGGGTATTGCTGGTGCTGCTGCACCTTCTGCTTGGACCCGCCAAGCAGGA,"Exon (4931406P16Rik-202/4931406P16Rik, exon 2 of 14)",7,34236707,34313551,76845,2,4931406P16Rik-202,28404,4931406P16Rik-202;4931406P16Rik-201;4931406P16Rik-210;4931406P16Rik-208;4931406P16Rik-203;4931406P16Rik-204,4931406P16Rik;4931406P16Rik;4931406P16Rik;4931406P16Rik;4931406P16Rik;4931406P16Rik,0;0;0;0;28398;20365,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,8,233103,ENSMUSG00000066571,conserved gene and region,7,34285022,34285154,133,*,133,9,0.69924812,0.561444653,0.067669173,0.00000959,CpGisland,TRUE,U10,Tr-S
4830,cg18512092,-0.00000513,0.00000184,-2.783724643,0.005703905,loss,ns,0.00000752,0.00000313,2.405251809,0.016747024,pos,ns,0.003366399,0.000916553,3.672891497,0.000282402,pos,ns,3.549132272,-0.0000513,0.0000315,-1.628874537,0.104355333,neg,ns,0.043965883,Agbl5,Agbl5_fiveUTR,5,30888926,30888975,30888974,30888975,50,+,CAATAGGCGAGAGACTTCTTGTTTCCTGGCAGAGCGGGGTCCCGGCACCG,Promoter (<=1kb),5,30888935,30906965,18031,1,Agbl5-213,0,Agbl5-203;Agbl5-201;Agbl5-207;Agbl5-213;Agbl5-205;Agbl5-218;Agbl5-214;Agbl5-208;Agbl5-215;Agbl5-211;Agbl5-209;Agbl5-202;Agbl5-204;Agbl5-210,Agbl5;Agbl5;Agbl5;Agbl5;Agbl5;Agbl5;Agbl5;Agbl5;Agbl5;Agbl5;Agbl5;Agbl5;Agbl5;Agbl5,0;0;0;0;0;0;0;0;0;0;0;0;0;-1307,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,5,231093,ENSMUSG00000029165,conserved gene and region,5,30888968,30889207,240,*,240,31,0.795833333,0.815789474,0.129166667,1.12E-27,CpGisland,TRUE,U1,Pr-A
27913,cg21753180,0.0000536,0.0000138,3.892321779,0.000121591,gain,ns,-0.0000562,0.0000234,-2.405172154,0.016750606,neg,ns,0.027601495,0.006850422,4.029167006,0.0000705,pos,ns,4.151952005,-0.001226584,0.000235585,-5.20653425,0.000000351,neg,yes,0.538078283,Prox1,Prox1_fiveUTR,1,190162259,190162308,190162307,190162308,50,-,ATTGTGCCATCTTCAAAAGCTCGTCAGCTGGGCACAGCTCAAGAATCCCG,5' UTR,1,190118035,190170714,52680,2,Prox1-202,8406,Prox1-202;Prox1-201;Prox1-203,Prox1;Prox1;Prox1,0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,59,19130,ENSMUSG00000010175,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10365,cg03380644,0.00000156,0.00000417,0.374532797,0.708264032,gain,ns,0.000017,0.00000708,2.405001306,0.016758292,pos,ns,0.00157994,0.00207554,0.761218695,0.447105115,pos,ns,0.349590362,0.0000109,0.0000714,0.152436992,0.878941448,pos,ns,0.935248374,Fam122b,Fam122b_threeUTR,X,53246131,53246180,53246179,53246180,50,+,TCAGAAATGGTTAAGTCACTTGGGTGAGAGATCATCCATCAAGATGAACG,3' UTR,20,53243415,53269805,26391,2,Fam122b-201,23625,Fam122b-201;Fam122b-202;Fam122b-203;Fam122b-204,Fam122b;Fam122b;Fam122b;Fam122b,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,1,78755,ENSMUSG00000036022,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2988,cg02448718,-0.00000507,0.00000952,-0.532422107,0.594815078,loss,ns,0.0000389,0.0000162,2.404865655,0.016764397,pos,ns,0.006245077,0.004737971,1.318090899,0.188446344,pos,ns,0.724812284,-0.0000728,0.000162938,-0.44699722,0.6551892,neg,ns,0.626276978,Lrmda,Lrmda_Intron,14,22257640,22257689,22257640,22257641,50,+,CGGTTAATAGCAATCATTTGTTATCCAGTACTAGGCGTGATGCTTCAGAT,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,237928,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206,Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25131,cg24827166,-0.0000021,0.0000175,-0.120210601,0.904394192,loss,ns,-0.0000714,0.0000297,-2.404837432,0.016765667,neg,ns,0.074478998,0.008699335,8.561458773,5.28E-16,pos,yes,15.2777756,-0.002970252,0.000299169,-9.92832731,2.37E-20,neg,yes,0.504908212,Ahdc1,Ahdc1_Intron,4,133047285,133047334,133047285,133047286,50,+,CGGTGGCACAGAAGCAGTTAAGAGCTGCCTCAGCCTGTTCCTTCAGACAA,"Intron (Ahdc1-210/Ahdc1, intron 2 of 3)",4,133011260,133060820,49561,1,Ahdc1-210,36025,Ahdc1-210;Ahdc1-203;Ahdc1-204;Ahdc1-205;Ahdc1-207;Ahdc1-211;Ahdc1-209;Ahdc1-206;Ahdc1-201;Ahdc1-202,Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,35,49,230793,ENSMUSG00000037692,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23065,cg03995116,-0.0000152,0.00000728,-2.093578735,0.037109728,loss,ns,-0.0000297,0.0000124,-2.404698346,0.016771929,neg,ns,0.005702375,0.003623956,1.573522175,0.116617961,pos,ns,0.933234556,-0.000450068,0.000124628,-3.611308192,0.000355218,neg,ns,0.784915224,Taok3,Taok3_Exon,5,117251042,117251091,117251042,117251043,50,+,CGTCCATCGAGCTGGAGAAGCTGGCCAAGAAGCAAGTGGCTATCATAGAA,"Exon (Taok3-203/Taok3, exon 15 of 21)",5,117120129,117275217,155089,1,Taok3-203,130913,Taok3-203;Taok3-210;Taok3-201;Taok3-208;Taok3-202,Taok3;Taok3;Taok3;Taok3;Taok3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,20,330177,ENSMUSG00000061288,conserved gene and region,5,117250755,117251050,296,*,296,22,0.648648649,0.709368192,0.074324324,3.15E-14,CpGisland,TRUE,U10,Tr-S
6872,cg25741469,0.0000181,0.00000322,5.618424942,4.29E-08,gain,yes,-0.0000132,0.00000547,-2.404549737,0.016778621,neg,ns,-0.001535725,0.001602991,-0.958037584,0.33879037,neg,ns,0.470068942,0.000150924,0.0000551,2.737759323,0.006543321,pos,ns,0.906111536,Scai,Scai_threeUTR,2,39102303,39102352,39102351,39102352,50,+,AGCATTCCTTTATTGTACCTTCACTATCAGAACGACCTGTGGGGAAAACG,3' UTR,2,39066214,39190734,124521,2,Scai-201,88382,Scai-201;Scai-209;Scai-208;Scai-210;Scai-204;Scai-207;Scai-205;Scai-202;Scai-206,Scai;Scai;Scai;Scai;Scai;Scai;Scai;Scai;Scai,0;0;0;-2893;0;0;88378;6411;18805,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,1,320271,ENSMUSG00000035236,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6305,cg05305015,-0.000000161,0.00000482,-0.033400801,0.973376466,loss,ns,-0.0000197,0.00000818,-2.404541319,0.016779,neg,ns,-0.001960543,0.002397458,-0.817759008,0.414122891,neg,ns,0.382870763,0.000210869,0.0000824,2.557592781,0.011015538,pos,ns,0.88173105,Tshz3,Tshz3_Intergenic_downstream,7,36786454,36786503,36786454,36786455,50,-,CGGGTAAAGCTAAAAGTAGCCTCTTAATCTAATTAATTGACATTTCTGAA,Distal Intergenic,7,36698217,36702113,3897,1,Tshz3-202,88286,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,21,58,243931,ENSMUSG00000021217,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19577,cg07839933,-0.0000168,0.00000983,-1.710911039,0.088097896,loss,ns,0.0000401,0.0000167,2.404497827,0.01678096,pos,ns,0.005528795,0.004891169,1.130362629,0.25919725,pos,ns,0.586369611,-0.000205277,0.000168207,-1.220383467,0.223247046,neg,ns,0.655998864,Klf12,Klf12_Exon,14,99900120,99900169,99900168,99900169,50,-,TTTGTGTACACTTTGTTGCATCCCTCAAAATCACATCTGTGGATACGCCG,"Exon (Klf12-205/Klf12, exon 7 of 8)",14,99870632,100284679,414048,2,Klf12-205,384510,Klf12-205;Klf12-201;Klf12-206;Klf12-202,Klf12;Klf12;Klf12;Klf12,0;0;0;43539,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,11,16597,ENSMUSG00000072294,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18425,cg18433069,-0.00000338,0.0000025,-1.350861316,0.177725027,loss,ns,0.0000102,0.00000425,2.40447415,0.016782026,pos,ns,0.004401424,0.001245877,3.532790619,0.000473747,pos,ns,3.324453982,-0.0000862,0.0000428,-2.01238564,0.045043897,neg,ns,0.948084902,U2surp,U2surp_Intron,9,95488000,95488049,95488000,95488001,50,+,CGCAGACAGTTCAGCTGGTGTTGCTCACCAAGGCCAATGTCAAAGAGAAT,"Intron (U2surp-202/U2surp, intron 13 of 27)",9,95456898,95511894,54997,2,U2surp-202,23845,U2surp-202;U2surp-201;U2surp-208;U2surp-209,U2surp;U2surp;U2surp;U2surp,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,6,67958,ENSMUSG00000032407,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4108,cg03616753,-0.0000289,0.00000751,-3.843395375,0.000147224,loss,ns,0.0000307,0.0000128,2.404414937,0.016784694,pos,ns,-0.006184714,0.003739493,-1.653890934,0.099161862,neg,ns,1.003655327,0.000351817,0.000128601,2.735724791,0.006582933,pos,ns,0.746346016,Gm45647,Gm45647_Intergenic_downstream,8,26808521,26808570,26808569,26808570,50,-,AATAAATCTACCTGTCAAAGCGGAAACTTTAAAAGGAGCTAAGCCCAGCG,Distal Intergenic,8,26780315,26780509,195,1,Gm45647-201,28255,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,62,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3232,cg08018810,-0.0000188,0.00000726,-2.588708425,0.010087727,loss,ns,0.0000297,0.0000123,2.404399417,0.016785393,pos,ns,0.005137176,0.003614576,1.421238902,0.156252474,pos,ns,0.806173099,-0.000315118,0.000124305,-2.535038108,0.011734952,neg,ns,0.789354218,Klhl13,Klhl13_fiveUTR,X,23284637,23284686,23284637,23284638,50,-,CGTTTTCCATTTCAATGGCATGTTGTCACCACGGTACTACAATAACAGTA,5' UTR,20,23219271,23365082,145812,2,Klhl13-202,80396,Klhl13-202;Klhl13-205;Klhl13-204;Klhl13-201;Klhl13-206;Klhl13-207,Klhl13;Klhl13;Klhl13;Klhl13;Klhl13;Klhl13,0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,1,67455,ENSMUSG00000036782,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24912,cg14762104,-0.00000617,0.00000357,-1.729048562,0.084795953,loss,ns,-0.0000146,0.00000606,-2.404390544,0.016785793,neg,ns,-0.00464024,0.001775147,-2.614003249,0.009385691,neg,ns,2.02753373,0.000121471,0.000061,1.989790154,0.047492317,pos,ns,0.871128595,Hdac1,Hdac1_Exon,4,129522575,129522624,129522623,129522624,50,-,AGCTTACCGGGCTGGCTGCCTCCCTCAGGTATCTCTAAGCACCAGAGACG,"Exon (Hdac1-205/Hdac1, exon 1 of 5)",4,129516104,129542713,26610,2,Hdac1-201,20089,Hdac1-201;Hdac1-205;Hdac1-202;Hdac1-207;Hdac1-203,Hdac1;Hdac1;Hdac1;Hdac1;Hdac1,0;0;0;1960;1918,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,433759,ENSMUSG00000028800,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22078,cg25019710,-0.00000348,0.00000132,-2.631599456,0.008923488,loss,ns,0.0000054,0.00000225,2.40401811,0.016802582,pos,ns,0.000744072,0.000658102,1.130634562,0.259082907,pos,ns,0.586561238,-0.0000253,0.0000226,-1.117819374,0.264509667,neg,ns,0.043350271,Wdr20,Wdr20_Exon,12,110738218,110738267,110738218,110738219,50,-,CGCCTCTGCTTCAATGTGGGCCGGGAGCTGTACTTCTATATCTACAAGGG,Promoter (<=1kb),12,110737944,110804238,66295,1,Wdr20-205,274,Wdr20-205;Wdr20-204;Wdr20-203;Wdr20-201;Wdr20-202;Wdr20-207,Wdr20;Wdr20;Wdr20;Wdr20;Wdr20;Wdr20,0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,8,69641,ENSMUSG00000037957,conserved gene and region,12,110737489,110738785,1297,*,1297,129,0.68080185,0.867167335,0.099460293,3.23E-97,CpGisland,TRUE,U1,Pr-A
18732,cg06862200,0.0000763,0.0000088,8.665830262,2.53E-16,gain,yes,-0.0000359,0.000015,-2.403631683,0.016820018,neg,ns,0.002122141,0.004379953,0.484512404,0.62836441,pos,ns,0.201788421,-0.0000275,0.000150626,-0.182513606,0.855298975,neg,ns,0.682960363,Sp6,Sp6_Intergenic_upstream,11,97001348,97001397,97001348,97001349,50,+,CGTGTGTGGTTTCAGGATAAGCTGCCGATGCCACCCAGAGCGCCCTGCTG,Distal Intergenic,11,97013394,97024734,11341,1,Sp6-201,-11997,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,83395,ENSMUSG00000038560,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19188,cg05532378,-0.00000568,0.00000315,-1.806089955,0.071874083,loss,ns,0.0000128,0.00000535,2.403306665,0.016834695,pos,ns,0.002657728,0.001566396,1.696715804,0.090754179,pos,ns,1.042133367,-0.0000495,0.0000539,-0.918323925,0.359163244,neg,ns,0.92150144,Gm32308,Gm32308_Intergenic_downstream,6,98768004,98768053,98768004,98768005,50,+,CGTGTGTCAATTTAACTGATGTGCTAAGTGCCAGTTTACAATATCAGAAA,Distal Intergenic,6,98757749,98758028,280,1,Gm32308-201,10255,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,10,102634810,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9144,cg24296072,0.0000241,0.00000452,5.331490154,0.000000188,gain,yes,-0.0000185,0.00000768,-2.403108594,0.016843645,neg,ns,-0.00351614,0.002249397,-1.56314808,0.119038003,neg,ns,0.924314368,0.000159012,0.0000774,2.055575489,0.040660772,pos,ns,0.907094592,Cntnap2,Cntnap2_Exon,6,47107916,47107965,47107964,47107965,50,-,GACCACAGGAACATGGCCAATGGACAGCCCCACAGTGTCAACATCACCCG,"Exon (Cntnap2-202/Cntnap2, exon 20 of 24)",6,45060061,47304213,2244153,1,Cntnap2-202,2047855,Cntnap2-202,Cntnap2,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,66797,ENSMUSG00000039419,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22679,cg08367350,-0.0000455,0.0000418,-1.089727827,0.276679412,loss,ns,-0.000170555,0.000071,-2.402899224,0.016853111,neg,ns,-0.026570144,0.020794442,-1.277752157,0.202292834,neg,ns,0.6940195,0.000843677,0.000715119,1.179771131,0.238995812,pos,ns,0.780194987,BC052040,BC052040_Intron,2,115688591,115688640,115688591,115688592,50,-,CGTGGCATCCGAGCTTTACTTTACAGGGATGGAGGAGGAAAGTGCAAAAT,"Intron (BC052040-203/BC052040, intron 10 of 10)",2,115581716,115778768,197053,1,BC052040-203,106875,BC052040-203;BC052040-201,BC052040;BC052040,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,37,49,399568,ENSMUSG00000040282,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6813,cg24914618,0.00000972,0.00000269,3.618697283,0.000345631,gain,ns,-0.000011,0.00000456,-2.402774093,0.01685877,neg,ns,0.006080034,0.00133714,4.547043971,0.00000781,pos,ns,5.107216302,-0.0000452,0.000046,-0.98198246,0.326874242,neg,ns,0.951255756,Tmem39a,Tmem39a_Exon,16,38586242,38586291,38586242,38586243,50,-,CGCTGGTCATGTGAGCACCTCATTATGGTGTGGATCAATGCTTTTGTCAT,"Exon (Tmem39a-204/Tmem39a, exon 7 of 9)",16,38558698,38591190,32493,1,Tmem39a-204,27544,Tmem39a-204;Tmem39a-201;Tmem39a-214;Tmem39a-205;Tmem39a-202;Tmem39a-210;Tmem39a-209;Tmem39a-211;Tmem39a-203;Tmem39a-213;Tmem39a-207;Tmem39a-212;Tmem39a-206,Tmem39a;Tmem39a;Tmem39a;Tmem39a;Tmem39a;Tmem39a;Tmem39a;Tmem39a;Tmem39a;Tmem39a;Tmem39a;Tmem39a;Tmem39a,0;0;0;0;22053;0;0;0;0;0;0;-920;-1748,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,67846,ENSMUSG00000002845,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21727,cg01326566,0.0000213,0.00000337,6.305253086,9.89E-10,gain,yes,-0.0000138,0.00000573,-2.402585469,0.016867304,neg,ns,0.004370539,0.001678997,2.603064461,0.00968373,pos,ns,2.013957349,-0.000161249,0.0000577,-2.792646859,0.005552753,neg,ns,0.053473255,Slitrk1,Slitrk1_fiveUTR,14,108914068,108914117,108914116,108914117,50,+,CTCTTCTTTTCCTGTTCTCCTTCTCTTTCTTCTGCTCTTTCGGAATTACG,Promoter (<=1kb),14,108908800,108914158,5359,2,Slitrk1-201,41,Slitrk1-201,Slitrk1,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,7,17,76965,ENSMUSG00000075478,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
11247,cg25938965,-0.00000474,0.00000228,-2.082646274,0.038103005,loss,ns,0.00000929,0.00000387,2.402534422,0.016869614,pos,ns,0.002762802,0.001132671,2.439192171,0.015280792,pos,ns,1.81585413,-0.000116458,0.000039,-2.989735812,0.003015757,neg,ns,0.94056582,Sin3a,Sin3a_Exon,9,57113545,57113594,57113593,57113594,50,+,GTGGATGTTGATGTAGAAGATTATTACCCAGCTTTCCTGGACATGGTGCG,"Exon (Sin3a-204/Sin3a, exon 17 of 22)",9,57075338,57128366,53029,1,Sin3a-204,38207,Sin3a-204;Sin3a-208;Sin3a-206;Sin3a-207;Sin3a-201;Sin3a-205,Sin3a;Sin3a;Sin3a;Sin3a;Sin3a;Sin3a,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,4,20466,ENSMUSG00000042557,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8500,cg13459593,0.0000862,0.00000727,11.87112657,4.79E-27,gain,yes,-0.0000297,0.0000123,-2.402474631,0.01687232,neg,ns,0.005530899,0.003616122,1.529511263,0.127157487,pos,ns,0.895658063,-0.0000696,0.000124358,-0.559359554,0.57632025,neg,ns,0.155414446,Lbx1,Lbx1_Intergenic_downstream,19,45231307,45231356,45231355,45231356,50,-,CCATCAAATTGTCTACAAATTGTGAAGAAAATTCAAAAACCATATGGTCG,Distal Intergenic,19,45232684,45235812,3129,2,Lbx1-201,4505,Lbx1-201,Lbx1,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,30,50,16814,ENSMUSG00000025216,mapped to different genes,19,45231355,45231647,293,*,293,33,0.689419795,0.96381579,0.112627986,3.07E-27,CpGisland,TRUE,NA,NRS
5894,cg18305324,0.0000525,0.0000109,4.820616527,0.00000225,gain,ns,-0.0000444,0.0000185,-2.402353849,0.016877788,neg,ns,0.006754098,0.005417153,1.246798301,0.21341268,pos,ns,0.670779781,-0.000373083,0.000186295,-2.00263904,0.046086591,neg,ns,0.092504503,Prrc2a,Prrc2a_fiveUTR,17,35162921,35162970,35162969,35162970,50,+,GTTGAGCGAGGAATACTTCTTTCCATCCTTTCCCTTGGCAGTCGGCCCCG,Promoter (<=1kb),17,35149088,35162969,13882,2,Prrc2a-206,0,Prrc2a-201;Prrc2a-206;Prrc2a-203,Prrc2a;Prrc2a;Prrc2a,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,13,53761,ENSMUSG00000024393,conserved gene but different region,17,35162847,35163042,196,*,196,12,0.556122449,0.8,0.06122449,0.000000472,CpGisland,TRUE,NA,NRS
20606,cg12657334,-0.0000201,0.0000137,-1.464943858,0.143949661,loss,ns,-0.0000559,0.0000233,-2.402352902,0.016877831,neg,ns,0.002664222,0.006822736,0.390491736,0.696441162,pos,ns,0.157115568,-0.000633758,0.000234633,-2.701055366,0.007292087,neg,ns,0.840825047,Gm47225,Gm47225_Intergenic_downstream,10,103910227,103910276,103910227,103910228,50,+,CGCAAAGCTGCTTTTCTTAATAATAAGAAACAGCTGTTGTAAGCACAACA,Distal Intergenic,10,103893538,103893806,269,1,Gm47225-201,16689,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6658,cg17099206,-0.00000308,0.0000021,-1.468211909,0.143060585,loss,ns,0.00000856,0.00000357,2.402190298,0.016885195,pos,ns,0.002994918,0.001044441,2.86748454,0.004421007,pos,ns,2.354478845,-0.0000727,0.0000359,-2.023312051,0.043898819,neg,ns,0.961628228,Dennd1a,Dennd1a_Intron,2,37943962,37944011,37943962,37943963,50,+,CGTAATGAAATGGTTCAGTAAAGGTGCTCATGGAAATTCTTTTAATTAGG,"Intron (Dennd1a-201/Dennd1a, intron 12 of 21)",2,37798991,38287375,488385,2,Dennd1a-201,343364,Dennd1a-201;Dennd1a-207;Dennd1a-210;Dennd1a-204,Dennd1a;Dennd1a;Dennd1a;Dennd1a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,46,227801,ENSMUSG00000035392,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2894,cg22182545,-0.00000257,0.00000113,-2.267455118,0.024050638,loss,ns,0.00000462,0.00000193,2.401952223,0.016895981,pos,ns,0.001220169,0.000563979,2.163499986,0.03126653,pos,ns,1.504920311,-0.0000454,0.0000194,-2.343119162,0.019755187,neg,ns,0.971235709,Ehbp1,Ehbp1_Intron,11,22034586,22034635,22034634,22034635,50,+,ACCCAACCCCCTGTTGTACTCTTTTAAGTTGAGAATATTCAACGAGTGCG,"Intron (Ehbp1-201/Ehbp1, intron 20 of 23)",11,22005828,22285838,280011,2,Ehbp1-201,251203,Ehbp1-201;Ehbp1-202;Ehbp1-207,Ehbp1;Ehbp1;Ehbp1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,34,45,216565,ENSMUSG00000042302,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11005,cg06486970,0.000146753,0.0000114,12.849228,1.39E-30,gain,yes,-0.0000466,0.0000194,-2.40125743,0.016927496,neg,ns,0.003576664,0.005684419,0.629204829,0.529678361,pos,ns,0.275987769,-0.000168305,0.000195487,-0.860953905,0.389928835,neg,ns,0.589880192,Gm47104,Gm47104_Promoter,13,56208572,56208621,56208620,56208621,50,-,TGTGGTCAAGGCCATTGTAACGTGAGCAGTGCCTCGGAGGGGATTGGCCG,Promoter (5-6kb),13,56202231,56202937,707,2,Gm47104-201,-5684,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,6,6,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
19473,cg23120731,0.0000165,0.0000134,1.23605091,0.217375396,gain,ns,0.0000546,0.0000227,2.401241994,0.016928197,pos,ns,0.000353474,0.006657999,0.053090054,0.957694351,pos,ns,0.018773074,0.000326224,0.000228968,1.42475575,0.155233756,pos,ns,0.752089261,Pja1,Pja1_Intergenic_downstream,X,99390043,99390092,99390043,99390044,50,+,CGCGAATGCCATGCCCAGTTCATTTCCTCTAAGGAAACACAACCTCGGGG,Distal Intergenic,20,99466146,99470672,4527,2,Pja1-204,80580,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,17,18744,ENSMUSG00000034403,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24795,cg23317782,-0.0000284,0.00000571,-4.969696959,0.00000111,loss,yes,-0.0000233,0.0000097,-2.401201637,0.016930029,neg,ns,0.007564409,0.002840939,2.662643702,0.008157618,pos,ns,2.088436633,-0.000350794,0.0000977,-3.590529478,0.000383533,neg,ns,0.800632218,Smarcc2,Smarcc2_Exon,10,128488010,128488059,128488010,128488011,50,-,CGTGGCGGGTAATGCTCCTTTGGGTTTGCCTTTTGGCATGCCGCCTCCTC,"Exon (Smarcc2-201/Smarcc2, exon 27 of 28)",10,128459248,128490482,31235,1,Smarcc2-205,28762,Myl6-201;Myl6-213;Myl6-212;Myl6-202;Myl6-206;Myl6-209;Myl6-211;Myl6-205;Myl6-203;Myl6-214;Myl6-208;Myl6-215;Myl6-207;Myl6-210;Myl6-204;Smarcc2-205;Smarcc2-201;Smarcc2-202;Smarcc2-203,Myl6;Myl6;Myl6;Myl6;Myl6;Myl6;Myl6;Myl6;Myl6;Myl6;Myl6;Myl6;Myl6;Myl6;Myl6;Smarcc2;Smarcc2;Smarcc2;Smarcc2,0;0;0;0;0;0;0;0;0;0;0;5770;5734;6086;5515;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,16,68094,ENSMUSG00000025369,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24067,cg06368075,0.000021,0.00000303,6.9209089,2.58E-11,gain,yes,-0.0000124,0.00000515,-2.40093768,0.016942017,neg,ns,0.003958025,0.001508319,2.624129898,0.009117138,pos,ns,2.040141468,-0.000111067,0.0000519,-2.141217994,0.033035948,neg,ns,0.035982859,Zic5,Zic5_Intron,14,122450752,122450801,122450752,122450753,50,+,CGCGCTCCTCGCTGCTAATTACAAATAAATGATGATGTGCTCACTAAGTA,"Intron (Gm5089-201/Gm5089-201, intron 1 of 2)",14,122459193,122460021,829,2,Zic5-202,9220,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,26,65100,ENSMUSG00000041703,mapped to different genes,14,122450709,122450762,54,*,54,8,0.796296296,0.935064935,0.148148148,9.03E-08,CpGisland,TRUE,U3,Pr-B
26480,cg16102371,0.0000407,0.0000109,3.749295298,0.000211535,gain,ns,0.0000443,0.0000184,2.400854226,0.016945808,pos,ns,0.026001014,0.00540364,4.811759416,0.00000234,pos,ns,5.630770214,-0.000761088,0.000185831,-4.09559602,0.0000538,neg,ns,0.224956061,Casz1,Casz1_Intergenic_upstream,4,148746447,148746496,148746495,148746496,50,-,ACCCCAAGGTCAAGGGTAGTAGCAGATTAGTATTCATAGAATTCATCACG,Distal Intergenic,4,148804429,148954889,150461,1,Casz1-202,-57982,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,14,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12157,cg23201535,0.0000496,0.0000182,2.722215757,0.006851494,gain,ns,0.0000743,0.000031,2.400530063,0.016960543,pos,ns,0.015876153,0.009068182,1.750753791,0.08097748,pos,ns,1.091635743,0.0000735,0.000311854,0.23567813,0.813838063,pos,ns,0.397967363,Skor1,Skor1_Promoter,9,63152079,63152128,63152079,63152080,50,+,CGTCAGTTAATTAGGTTTAATTTACATAATTAGTACAGTATAAAGAGGAT,Promoter (3-4kb),9,63138170,63148961,10792,2,Skor1-202,-3118,Skor1-202,Skor1,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,6,15,207667,ENSMUSG00000022245,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
25746,cg14044818,-0.0000238,0.00000794,-2.993333373,0.00298143,loss,ns,0.0000324,0.0000135,2.400412255,0.016965901,pos,ns,-0.006107356,0.003951048,-1.545756,0.123183723,neg,ns,0.909446676,-0.0000899,0.000135876,-0.661878503,0.508540786,neg,ns,0.711119402,Rergl,Rergl_Intergenic_downstream,6,139293871,139293920,139293871,139293872,50,+,CGATAGCACTCATTAAAAGCTCCACAGACTGTGTGGTTTACTAATTAGTT,Distal Intergenic,6,139492973,139501976,9004,2,Rergl-201,208056,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,5,632971,ENSMUSG00000092164,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16103,cg18258323,-0.00000618,0.0000066,-0.936057739,0.349972081,loss,ns,0.0000269,0.0000112,2.400378137,0.016967453,pos,ns,0.007967124,0.003283959,2.426073299,0.015833497,pos,ns,1.800423143,-0.000177486,0.000112935,-1.571573071,0.117069656,neg,ns,0.607075308,Cyp26b1,Cyp26b1_Intergenic_downstream,6,84410305,84410354,84410353,84410354,50,+,CCAAAGTATATGTGACCTAAAAAGGCATTGCTCATTCTGACACATATACG,Distal Intergenic,6,84571414,84587680,16267,2,Cyp26b1-205,177326,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,9,232174,ENSMUSG00000063415,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25200,cg21628661,-0.0000249,0.00000461,-5.407786555,0.000000128,loss,yes,-0.0000188,0.00000783,-2.400359395,0.016968306,neg,ns,-0.004426091,0.002293695,-1.929676983,0.054559181,neg,ns,1.263132159,-0.0000318,0.0000789,-0.403507569,0.686853047,neg,ns,0.887038536,Arid1a,Arid1a_Exon,4,133687203,133687252,133687251,133687252,50,-,CCTTTCCTCATGCTGCCATAAGGATCCTTATTTGGCTCATAGGACATGCG,"Exon (Arid1a-202/Arid1a, exon 14 of 20)",4,133679008,133753611,74604,2,Arid1a-202,66359,Arid1a-202;Arid1a-205;Arid1a-201;Arid1a-203,Arid1a;Arid1a;Arid1a;Arid1a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,13,31,93760,ENSMUSG00000007880,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20884,cg17317429,0.0000535,0.00000522,10.25442662,1.95E-21,gain,yes,-0.0000213,0.00000886,-2.400215224,0.016974865,neg,ns,0.007049445,0.00259677,2.71469754,0.007005205,pos,ns,2.154579157,-0.0000158,0.0000893,-0.176972053,0.859645909,neg,ns,0.10152941,Pax6,Pax6_Exon,2,105682333,105682382,105682333,105682334,50,-,CGCCCCGACTGATCTTTTCAATTAGCCTTCCATGCATGATCCGGAGCGAC,"Exon (Pax6-221/Pax6, exon 1 of 2)",2,105668900,105697364,28465,1,Pax6-206,13433,Pax6-206;Pax6-207;Pax6-210;Pax6-214;Pax6-208;Pax6-202;Pax6-205;Pax6-225;Pax6-204;Pax6-201;Pax6-203;Pax6-224;Pax6-219;Pax6-221;Pax6-213;Pax6-211;Pax6-222;Pax6-212;Pax6-215;Pax6-223;Pax6-209;Pax6-216,Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,31,78,18508,ENSMUSG00000027168,conserved gene but different region,2,105682176,105682419,244,*,244,18,0.524590164,1.074626866,0.073770492,1.12E-11,CpGisland,TRUE,NA,NRS
27011,cg13182287,-0.0000023,0.0000128,-0.179613386,0.85757344,loss,ns,-0.0000522,0.0000217,-2.399869887,0.016990587,neg,ns,-0.01120741,0.006371143,-1.75908945,0.079548827,neg,ns,1.099366219,0.000210983,0.000219103,0.962938086,0.336329117,pos,ns,0.758944355,Rbm39,Rbm39_threeUTR,2,156177358,156177407,156177358,156177359,50,-,CGTTGGCACTGCTCAACTTGTTCTCATCCTAAGCAGGGTTGATAGAAGAA,Promoter (<=1kb),2,156170040,156177383,7344,2,Rbm39-214,0,Rbm39-203;Rbm39-217;Rbm39-215;Rbm39-201;Rbm39-225;Rbm39-223;Rbm39-204;Rbm39-216;Rbm39-221;Rbm39-213;Rbm39-214;Rbm39-218;Rbm39-219;Rbm39-210;Rbm39-224;Rbm39-212;Rbm39-202;Rbm39-208;Rbm39-222;Rbm39-205;Rbm39-211,Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,11,13,170791,ENSMUSG00000027620,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
24683,cg14060906,-0.0000102,0.0000019,-5.344377673,0.000000176,loss,yes,0.00000776,0.00000323,2.399856465,0.016991199,pos,ns,0.000597621,0.00094735,0.630834812,0.528613338,pos,ns,0.276861883,0.00000544,0.0000326,0.167096281,0.867403236,pos,ns,0.075053688,Zfp629,Zfp629_fiveUTR,7,127615226,127615275,127615274,127615275,50,+,GACCAGTTCAGGGTGACTGGGACGGAGCAGGAAGTGACCCCAGCTTCCCG,Promoter (<=1kb),7,127607031,127615272,8242,2,Zfp629-202,0,Zfp629-201;Zfp629-203;Zfp629-202;Zfp629-208;Zfp629-207;Zfp629-206;Zfp629-205;Zfp629-204;Zfp629-209,Zfp629;Zfp629;Zfp629;Zfp629;Zfp629;Zfp629;Zfp629;Zfp629;Zfp629,0;0;0;0;0;0;-866;-26;-861,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,4,320683,ENSMUSG00000045639,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
3502,cg18279167,-0.0000241,0.00000547,-4.416241269,0.0000139,loss,ns,0.0000223,0.00000929,2.399174336,0.017022292,pos,ns,0.002583909,0.002720969,0.94962825,0.343040913,pos,ns,0.464654081,-0.000142392,0.0000936,-1.521707895,0.129101639,neg,ns,0.897775676,Gm11892,Gm11892_Intergenic_upstream,4,24213531,24213580,24213531,24213532,50,+,CGATTCAATCTGCTTTCCAACCAGTAATGCTCAATGGTCTGACAGTTTTT,Distal Intergenic,4,24238100,24239301,1202,1,Gm11892-201,-24520,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,16,16,664973,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4703,cg10695556,-0.00000493,0.00000163,-3.01760716,0.002759024,loss,ns,0.00000665,0.00000277,2.399140708,0.017023826,pos,ns,0.002390566,0.000812511,2.94219498,0.003504694,pos,ns,2.455349892,-0.0000738,0.0000279,-2.642028633,0.008659285,neg,ns,0.960875358,Cacna1d,Cacna1d_Exon,14,30171957,30172006,30171957,30171958,50,+,CGCTCAATACACCAAGTACAAGATTTAGTACGAAAAATGACCCAAAGATG,"Exon (Cacna1d-208/Cacna1d, exon 8 of 48)",14,30039941,30491453,451513,2,Cacna1d-202,319447,Cacna1d-202;Cacna1d-201;Cacna1d-208;Cacna1d-209;Cacna1d-214;Cacna1d-204;Cacna1d-207;Cacna1d-218;Cacna1d-216;Cacna1d-206,Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,26,12289,ENSMUSG00000015968,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11035,cg14794009,-0.00000117,0.00000537,-0.217061636,0.828303097,loss,ns,0.0000219,0.00000912,2.398933541,0.01703328,pos,ns,0.01029822,0.002673249,3.852323641,0.000142194,pos,ns,3.847117713,-0.000252775,0.0000919,-2.749559316,0.006317795,neg,ns,0.87481141,Gm28900,Gm28900_Intergenic_upstream,1,56345081,56345130,56345129,56345130,50,+,CAGTTCAGTAGTTAAGTGAGAAACAGATTTGCCATTAAAATGCACAGTCG,Distal Intergenic,1,56451407,56451562,156,1,Gm28900-201,-106277,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,12,102635907,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9258,cg21164975,-0.0000365,0.00000455,-8.032402187,2.01E-14,loss,yes,-0.0000185,0.00000772,-2.39869406,0.017044214,neg,ns,0.004499962,0.002262438,1.988987489,0.047581321,pos,ns,1.322563501,-0.000287474,0.0000778,-3.694799178,0.000260076,neg,ns,0.904681608,Foxp4,Foxp4_threeUTR,17,47867758,47867807,47867806,47867807,50,+,AAAAAGTTTTGGTTTTTGCTTCCGGCATAAGAAAGGTCTTTGGTCATCCG,3' UTR,17,47867133,47924645,57513,2,Foxp4-204,56838,Foxp4-204;Foxp4-203;Foxp4-201;Foxp4-202,Foxp4;Foxp4;Foxp4;Foxp4,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,25,74123,ENSMUSG00000023991,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10460,cg26851215,-0.0000227,0.00000911,-2.494835495,0.013121698,loss,ns,0.0000371,0.0000155,2.398503389,0.017052924,pos,ns,0.015189194,0.004531726,3.351746247,0.00090246,pos,ns,3.044571872,-0.000547944,0.000155846,-3.515940921,0.000503609,neg,ns,0.848504026,Npas3,Npas3_Intron,12,53647548,53647597,53647596,53647597,50,-,TGCAGTAAATAACTTGGAGGCATAATTACTTAATTTTCCTGTGTTGCACG,"Intron (Npas3-204/Npas3, intron 3 of 10)",12,53248157,54069532,821376,1,Npas3-204,399391,Npas3-204;Npas3-201;Npas3-203,Npas3;Npas3;Npas3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,83,103,27386,ENSMUSG00000021010,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23597,cg15411810,0.0000249,0.00000356,6.986583927,1.73E-11,gain,yes,-0.0000145,0.00000605,-2.398445416,0.017055573,neg,ns,-0.005251028,0.001773489,-2.960845579,0.003304832,neg,ns,2.480850637,0.00014455,0.000061,2.370053985,0.018397331,pos,ns,0.070670621,Itgb8,Itgb8_Promoter,12,119238864,119238913,119238864,119238865,50,+,CGGGACATTGGTGAGGCATGAAGTCACCGCGGCCCACACTCGCTCTTTGT,Promoter (<=1kb),12,119158022,119238802,80781,2,Itgb8-201,-62,Itgb8-201;Itgb8-203;Itgb8-202,Itgb8;Itgb8;Itgb8,-62;-63;-94,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,1,320910,ENSMUSG00000025321,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
26021,cg01614615,-0.00000482,0.00000187,-2.5802688,0.010332207,loss,ns,0.00000762,0.00000318,2.398091083,0.017071772,pos,ns,0.001954904,0.000930437,2.101059,0.036442939,pos,ns,1.438386605,0.0000234,0.000032,0.730853936,0.465420392,pos,ns,0.052304255,Prdm2,Prdm2_Exon,4,143162114,143162163,143162114,143162115,50,-,CGCAGCTGCTATCTCAGGGTTGTCTTCCCCATTGTACCAGACCAGGAGCT,"Exon (Prdm2-201/Prdm2, exon 6 of 10)",4,143107391,143212705,105315,2,Prdm2-201,50542,Gm13039-201;Prdm2-201;Prdm2-203;Prdm2-202,Gm13039;Prdm2;Prdm2;Prdm2,-4440;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,110593,ENSMUSG00000057637,conserved gene but different region,4,143161653,143162177,525,*,525,68,0.718095238,1.014492754,0.12952381,2.66E-60,CpGisland,TRUE,U1,Pr-A
8222,cg14261013,-0.00000163,0.00000168,-0.970006919,0.332799248,loss,ns,0.00000683,0.00000285,2.398048354,0.017073727,pos,ns,0.002615885,0.00083423,3.135687195,0.001878872,pos,ns,2.726102781,-0.000078,0.0000287,-2.72015757,0.006893268,neg,ns,0.967482066,Gm5246,Gm5246_Intergenic_downstream,19,44880800,44880849,44880800,44880801,50,-,CGATTAAATCAAGTATGTCGAACAAAATGTTATGAACTGACATTATGGGT,Distal Intergenic,19,44851009,44851979,971,1,Gm5246-201,29840,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,20,383450,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3768,cg24323219,-0.00000147,0.00000192,-0.765781311,0.444389098,loss,ns,-0.00000782,0.00000326,-2.397861853,0.017082259,neg,ns,-0.000606928,0.000956034,-0.634839598,0.526001291,neg,ns,0.27901319,0.0000276,0.0000329,0.839323034,0.40193484,pos,ns,0.93481367,Kmt2c,Kmt2c_Intron,5,25304097,25304146,25304097,25304098,50,-,CGCAAGGAAAGCCTTTCTGGTTTCTGGAACCAGGAGAGCAGAGGTGAGCA,"Intron (Kmt2c-202/Kmt2c, intron 3 of 19)",5,25272426,25308550,36125,2,Kmt2c-202,4404,Kmt2c-208;Kmt2c-202;Kmt2c-201,Kmt2c;Kmt2c;Kmt2c,-4022;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,4,231051,ENSMUSG00000038056,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
186,cg19468667,-0.00000719,0.00000326,-2.204018353,0.028257766,loss,ns,0.0000133,0.00000555,2.39779046,0.017085527,pos,ns,-0.002689277,0.001624599,-1.655348521,0.09886577,neg,ns,1.004954046,0.0000589,0.0000559,1.054424381,0.292509772,pos,ns,0.908244967,Frmd4a,Frmd4a_Exon,2,4604204,4604253,4604204,4604205,50,+,CGCACAGCAGGGTCACCAGGATGCCCCAGATGTGCAAGGCCACGTCAGGT,"Exon (Frmd4a-219/Frmd4a, exon 22 of 25)",2,4017744,4614041,596298,1,Frmd4a-219,586460,Frmd4a-219;Frmd4a-202;Frmd4a-201;Frmd4a-216,Frmd4a;Frmd4a;Frmd4a;Frmd4a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,3,209630,ENSMUSG00000026657,conserved gene and region,2,4603724,4604205,482,*,482,36,0.639004149,0.733637747,0.074688797,5.50E-23,CpGisland,TRUE,U10,Tr-S
18282,cg13856299,-0.0000279,0.0000152,-1.837941985,0.067027721,loss,ns,0.0000619,0.0000258,2.397601586,0.017094173,pos,ns,0.002283324,0.007558947,0.302069056,0.762801977,pos,ns,0.11758819,-0.000356554,0.000259952,-1.371615647,0.171175023,neg,ns,0.521164917,Gm48316,Gm48316_Intergenic_upstream,13,94680562,94680611,94680562,94680563,50,+,CGGATTTCTCTGGAGACAGCCCTAGGAAATACACTTTTTGATTAGTAAAT,Distal Intergenic,13,94752270,94752593,324,1,Gm48316-201,-71659,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,36,42,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5708,cg08071891,-0.00000165,0.00000141,-1.175765139,0.240590918,loss,ns,0.00000573,0.00000239,2.397376086,0.017104501,pos,ns,0.001604471,0.000700371,2.290886717,0.022640787,pos,ns,1.645108481,-0.0000451,0.0000241,-1.871778178,0.062178817,neg,ns,0.967836822,Mapkap1,Mapkap1_Intron,2,34603758,34603807,34603806,34603807,50,-,TGGATGCACCTCTCCTTGGGCCTGAGTGGATATGACATTTACAAGGCTCG,"Intron (Mapkap1-204/Mapkap1, intron 9 of 10)",2,34406862,34623475,216614,1,Mapkap1-204,196896,Mapkap1-204;Mapkap1-202;Mapkap1-201;Mapkap1-209;Mapkap1-203,Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,59,227743,ENSMUSG00000038696,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5794,cg19116058,0.0000757,0.0000107,7.081367711,9.61E-12,gain,yes,-0.0000435,0.0000182,-2.397325696,0.01710681,neg,ns,0.031332069,0.005318162,5.891522401,9.96E-09,pos,ns,8.001540042,-0.000845983,0.000182891,-4.625609249,0.00000549,neg,ns,0.84313342,Fbxw2,Fbxw2_threeUTR,2,34805481,34805530,34805529,34805530,50,+,CATAACTAAGTACAAATGAAGTCAATGGTGTACCCCATTAGCATGCTGCG,3' UTR,2,34804514,34822920,18407,2,Fbxw2-213,17390,Fbxw2-213;Fbxw2-201;Fbxw2-205;Fbxw2-202;Fbxw2-204;Fbxw2-206;Fbxw2-203;Fbxw2-210,Fbxw2;Fbxw2;Fbxw2;Fbxw2;Fbxw2;Fbxw2;Fbxw2;Fbxw2,0;0;0;0;0;0;0;3133,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,2,30050,ENSMUSG00000035949,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8444,cg17435471,0.0000794,0.00000814,9.751612306,9.04E-20,gain,yes,-0.0000332,0.0000138,-2.397016558,0.01712098,neg,ns,0.014003677,0.004052344,3.455697974,0.00062542,pos,ns,3.203828242,-0.000198694,0.00013936,-1.425760491,0.154943648,neg,ns,0.155217978,Tlx1,Tlx1_fiveUTR,19,45151452,45151501,45151500,45151501,50,-,GATGGAGAGTAACCGCAGATACACAAAGGACAGGTTCACAGGTGAGTCCG,Promoter (<=1kb),19,45151469,45156399,4931,1,Tlx1-202,0,Tlx1-201;Tlx1-202,Tlx1;Tlx1,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,7,21908,ENSMUSG00000025215,conserved gene but different region,19,45150790,45151532,743,*,743,80,0.728129206,0.812687996,0.107671602,1.42E-63,CpGisland,TRUE,U13,Hc-P
2351,cg26834803,0.000197807,0.0000151,13.06625799,2.21E-31,gain,yes,-0.0000616,0.0000257,-2.395930046,0.017170863,neg,ns,0.017026427,0.007534706,2.259733296,0.024531718,pos,ns,1.61027204,-0.000536956,0.000259118,-2.072243998,0.039069115,neg,ns,0.121560111,Tfap2d,Tfap2d_Exon,1,19104632,19104681,19104680,19104681,50,+,AGCAGATCCACCACGGGGAGCCCACCGACTTTATTAACCTGCACAATGCG,"Exon (Tfap2d-201/Tfap2d, exon 2 of 8)",1,19103022,19166346,63325,1,Tfap2d-201,1610,Tfap2d-201;Tfap2d-202,Tfap2d;Tfap2d,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,23,226896,ENSMUSG00000042596,conserved gene and region,1,19104477,19104754,278,*,278,20,0.615107914,0.848336894,0.071942446,1.04E-12,CpGisland,TRUE,U13,Hc-P
6990,cg03443171,0.0000243,0.00000578,4.211689809,0.0000333,gain,ns,-0.0000235,0.00000982,-2.395823339,0.017175769,neg,ns,-0.005610604,0.002875921,-1.950889676,0.051970869,neg,ns,1.284240024,-0.0000302,0.0000989,-0.305806983,0.759956867,neg,ns,0.817807506,Gramd1b,Gramd1b_Exon,9,40392328,40392377,40392376,40392377,50,-,CCTTGCAATAACATTCAGACTGACTGAGGCCTACACAGGAGCCAGGAGCG,"Exon (Gramd1b-206/Gramd1b, exon 1 of 4)",9,40293233,40455764,162532,2,Gramd1b-201,63387,Gramd1b-201;Gramd1b-203;Gramd1b-212;Gramd1b-213;Gramd1b-202;Gramd1b-206;Gramd1b-210;Gramd1b-208;Gramd1b-205,Gramd1b;Gramd1b;Gramd1b;Gramd1b;Gramd1b;Gramd1b;Gramd1b;Gramd1b;Gramd1b,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,5,235283,ENSMUSG00000040111,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26436,cg01725297,-0.000000273,0.0000017,-0.160424646,0.872651062,loss,ns,-0.00000693,0.00000289,-2.395676138,0.017182539,neg,ns,0.000164361,0.00084705,0.19403993,0.846271705,pos,ns,0.07249018,-0.0000586,0.0000291,-2.010103301,0.045286253,neg,ns,0.954482727,Clcn6,Clcn6_Exon,4,148017532,148017581,148017532,148017533,50,+,CGGTACTTTGCAAGCCTCTTGTTCAGACAGTTGAATGTGGCTCCCAGGAG,"Exon (Clcn6-205/Clcn6, exon 12 of 23)",4,148004259,148038821,34563,2,Clcn6-205,21240,Clcn6-205;Clcn6-201;Clcn6-202,Clcn6;Clcn6;Clcn6,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,26372,ENSMUSG00000029016,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17339,cg02654499,-0.000000734,0.00000315,-0.232714536,0.81613665,loss,ns,-0.0000128,0.00000536,-2.395649004,0.017183787,neg,ns,-0.003865962,0.001568843,-2.464212601,0.014273804,neg,ns,1.845460263,0.0000127,0.000054,0.235641865,0.813866181,pos,ns,0.893685975,Ube2q1,Ube2q1_Exon,3,89779771,89779820,89779771,89779772,50,-,CGGTGCAGGCCACTGACCGGCTGATGAAGGAGCTCAGGGATATATACCGA,"Exon (Ube2q1-201/Ube2q1, exon 6 of 13)",3,89773616,89784000,10385,1,Ube2q1-201,6155,Ube2q1-201;Ube2q1-203;Ube2q1-202,Ube2q1;Ube2q1;Ube2q1,0;5911;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,6,70093,ENSMUSG00000042572,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16321,cg20740669,-0.000000254,0.00000668,-0.038107313,0.969626649,loss,ns,0.0000272,0.0000113,2.395542868,0.01718867,pos,ns,0.005893872,0.003322639,1.773852599,0.077069126,pos,ns,1.113119563,-0.00000342,0.000114265,-0.029937691,0.976136011,neg,ns,0.882320853,Mrm1,Mrm1_Intergenic_downstream,11,84744836,84744885,84744884,84744885,50,-,TCCATGAATTCCTAATCAGTTTCATTTCATAATGATTCAGGAGCCGCCCG,Distal Intergenic,11,84814743,84815390,648,2,Mrm1-203,70554,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,37,42,217038,ENSMUSG00000018405,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22867,cg15436091,-0.0000398,0.0000122,-3.264163986,0.001220587,loss,ns,-0.0000496,0.0000207,-2.395486917,0.017191244,neg,ns,0.051132311,0.006070012,8.423758446,1.38E-15,pos,yes,14.86022953,-0.001190021,0.000208747,-5.700775549,2.78E-08,neg,yes,0.794325161,Tmcc1,Tmcc1_fiveUTR,6,116043559,116043608,116043607,116043608,50,+,CAGCCTGCTGTTTGTCTGCACTGTTGGCAAGCTTCAAGTATTCAGCAACG,5' UTR,6,116018611,116193486,174876,2,Tmcc1-202,149878,Tmcc1-202;Tmcc1-210;Tmcc1-201;Tmcc1-203;Tmcc1-206;Tmcc1-208;Tmcc1-209;Tmcc1-204,Tmcc1;Tmcc1;Tmcc1;Tmcc1;Tmcc1;Tmcc1;Tmcc1;Tmcc1,0;0;0;0;0;0;0;90295,TRUE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,3,330401,ENSMUSG00000030126,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
702,cg02453401,-0.00000609,0.00000593,-1.027253452,0.305102,loss,ns,0.0000241,0.0000101,2.395431648,0.017193788,pos,ns,0.009632809,0.002951419,3.26378903,0.001222149,pos,ns,2.912875709,-0.000302419,0.000101499,-2.979529447,0.003115123,neg,ns,0.884082083,Cplane1,Cplane1_Exon,15,8182244,8182293,8182292,8182293,50,-,CTATAGAATTTGGCCCAGCAGAATTTATTCCTCTTCATCCACTAATAACG,"Exon (Cplane1-201/Cplane1, exon 10 of 53)",15,8169106,8271158,102053,1,Cplane1-201,13138,Cplane1-201;Cplane1-204,Cplane1;Cplane1,0;-3918,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,73692,ENSMUSG00000039801,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12777,cg21022384,-0.000004,0.00000698,-0.572532814,0.567376051,loss,ns,0.0000284,0.0000119,2.395123564,0.017207972,pos,ns,0.009946959,0.003476319,2.861347925,0.004505215,pos,ns,2.346284517,-0.000291481,0.00011955,-2.438140589,0.015324458,neg,ns,0.894742837,Rsrc1,Rsrc1_Intron,3,67147439,67147488,67147487,67147488,50,+,TGATTATCTTGTTAACTCTTGACAGTTACCGCCAGCTTGAAATGGAACCG,"Intron (Rsrc1-206/Rsrc1, intron 4 of 9)",3,66981390,67356559,375170,1,Rsrc1-206,166049,Rsrc1-206;Rsrc1-203;Rsrc1-202;Rsrc1-201;Rsrc1-209;Rsrc1-205,Rsrc1;Rsrc1;Rsrc1;Rsrc1;Rsrc1;Rsrc1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,37,66880,ENSMUSG00000034544,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27585,cg17470917,-0.0000081,0.00000708,-1.144069394,0.253477486,loss,ns,0.0000288,0.000012,2.394173211,0.017251793,pos,ns,0.004830672,0.003522182,1.371499663,0.171211116,pos,ns,0.766468042,-0.0000121,0.000121128,-0.099986045,0.920420034,neg,ns,0.938330793,Zfp217,Zfp217_Intergenic_downstream,2,170072292,170072341,170072292,170072293,50,-,CGGCTCAAATGTAGTTCTGACATGAAAAGCAAGGTGCTGATATTATTTTT,Downstream (<1kb),2,170120333,170131220,10888,2,Zfp217-204,58928,Tshz2-203;Tshz2-205,Tshz2;Tshz2,0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,4,4,228913,ENSMUSG00000052056,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25054,cg03256017,-0.0000482,0.00000767,-6.285885586,1.11E-09,loss,yes,-0.0000312,0.000013,-2.393892295,0.017264764,neg,ns,-0.004605868,0.003816662,-1.20677913,0.22843728,neg,ns,0.64123302,0.0000912,0.000131255,0.694925614,0.487622449,pos,ns,0.901397246,Srsf4,Srsf4_Exon,4,131884258,131884307,131884306,131884307,50,-,TTTCCTCTATTCTTCTAGTCTGTTATGTTCTGAACCCACACATGTTTTCG,Promoter (<=1kb),4,131884295,131897834,13540,1,Srsf4-204,0,Srsf4-202;Srsf4-203;Srsf4-204;Srsf4-201,Srsf4;Srsf4;Srsf4;Srsf4,0;0;0;-901,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,57317,ENSMUSG00000028911,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7843,cg06116359,-0.00004,0.0000128,-3.135686835,0.001878874,loss,ns,0.0000519,0.0000217,2.393884895,0.017265106,pos,ns,0.017542599,0.00635191,2.761783353,0.0060916,pos,ns,2.21526859,-0.000463001,0.000218442,-2.119561582,0.034837549,neg,ns,0.360665984,Gm12455,Gm12455_Intergenic_downstream,4,44508718,44508767,44508718,44508719,50,-,CGGGAAGTTCACATATTTGGGCATTAGTGCAGCTATTAGTTTAACAAGCT,Distal Intergenic,4,44382922,44383337,416,1,Gm12455-201,125845,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,15,15,,NA,mapped to different genes,4,44508566,44508719,154,*,154,13,0.662337662,0.784482759,0.084415584,2.76E-09,CpGisland,TRUE,U15,NS
23308,cg18770368,-0.00000126,0.00000165,-0.765131659,0.444775242,loss,ns,0.00000672,0.00000281,2.393884562,0.017265122,pos,ns,0.002392959,0.000822372,2.90982493,0.003877987,pos,ns,2.411393607,-0.0000645,0.0000283,-2.27945116,0.023319572,neg,ns,0.961232134,Eri3,Eri3_Intron,4,117666148,117666197,117666196,117666197,50,-,GCCTGCTAATCAAGATGAAATTGCCTTTTCCCCTTATTGTGGAACCATCG,"Intron (Eri3-201/Eri3, intron 8 of 8)",4,117550365,117674297,123933,1,Eri3-201,115783,Eri3-201;Eri3-206;Eri3-203,Eri3;Eri3;Eri3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,82,97,140546,ENSMUSG00000033423,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11897,cg02058618,-0.00000569,0.00000597,-0.952590367,0.341539804,loss,ns,0.0000243,0.0000101,2.393659568,0.017275517,pos,ns,0.010763644,0.002971377,3.622443673,0.000340864,pos,ns,3.467419474,-0.000366641,0.000102185,-3.588002255,0.000387118,neg,ns,0.870909107,Csnk1a1,Csnk1a1_Exon,18,61569500,61569549,61569548,61569549,50,+,TTTATACACAGAGACATTAAACCAGATAACTTCCTAATGGGTATTGGGCG,"Exon (Csnk1a1-204/Csnk1a1, exon 4 of 10)",18,61555274,61590061,34788,1,Csnk1a1-204,14226,Csnk1a1-204;Csnk1a1-206;Csnk1a1-201;Csnk1a1-207;Csnk1a1-202;Csnk1a1-210;Csnk1a1-208,Csnk1a1;Csnk1a1;Csnk1a1;Csnk1a1;Csnk1a1;Csnk1a1;Csnk1a1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,9,93687,ENSMUSG00000024576,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18223,cg00491561,-0.0000304,0.0000145,-2.093121852,0.03715079,loss,ns,0.0000591,0.0000247,2.393653946,0.017275777,pos,ns,0.002536059,0.007239467,0.350310246,0.72634378,pos,ns,0.138857778,0.0000458,0.000248965,0.183819047,0.854275591,pos,ns,0.58826609,Gm18074,Gm18074_Intergenic_upstream,14,94521899,94521948,94521947,94521948,50,+,ACCAAAGAGCCCTTCTGTTCTTTAATGGCTGCACTAAATCTTAACAAACG,Distal Intergenic,14,94508191,94508794,604,2,Gm18074-201,-13105,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,100416368,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17868,cg18611872,-0.00000463,0.00000161,-2.882773666,0.004217404,loss,ns,0.00000653,0.00000273,2.393575857,0.017279387,pos,ns,0.002221416,0.000799575,2.778247143,0.005798538,pos,ns,2.236681509,-0.0000452,0.0000275,-1.644663123,0.101052921,neg,ns,0.052202536,Phf21a,Phf21a_Intron,2,92183415,92183464,92183463,92183464,50,+,GGGTGCCGCAGCACACCCCGTTCCTTAGGCAAAGTGAAATAAATTCGCCG,"Intron (Phf21a-201/Phf21a, intron 1 of 15)",2,92093117,92364666,271550,1,Phf21a-201,90298,Phf21a-201;Phf21a-202;Phf21a-204;Phf21a-209;Phf21a-208;Phf21a-207;Phf21a-212;Phf21a-219;Phf21a-206;Phf21a-216;Phf21a-221;Phf21a-220;Phf21a-210;Phf21a-205;Phf21a-211,Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,21,192285,ENSMUSG00000058318,conserved gene but different region,2,92183394,92183855,462,*,462,72,0.787878788,1.004347826,0.155844156,9.30E-71,CpGisland,TRUE,U1,Pr-A
1883,cg00325115,-0.00000345,0.00000149,-2.316245763,0.0211968,loss,ns,0.00000605,0.00000253,2.393501263,0.017282835,pos,ns,0.001206145,0.000740363,1.629127923,0.104301662,pos,ns,0.981708772,-0.0000714,0.0000255,-2.805740233,0.005337507,neg,ns,0.965271965,Fat3,Fat3_Exon,9,15990501,15990550,15990549,15990550,50,+,TCTGGATCTAGAAAAAATTCACTGTTTCCAGATCCATAGAGTGAGTATCG,"Exon (Fat3-205/Fat3, exon 12 of 26)",9,15910189,16501285,591097,2,Fat3-205,510735,Fat3-205;Fat3-201,Fat3;Fat3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,4,270120,ENSMUSG00000074505,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14155,cg07071132,0.0000913,0.00000741,12.33013195,1.08E-28,gain,yes,-0.0000301,0.0000126,-2.393313494,0.017291518,neg,ns,-0.007987954,0.003686929,-2.166559903,0.03103004,neg,ns,1.508217668,0.000521851,0.000126793,4.115763893,0.0000495,pos,ns,0.200490086,Hoxd3,Hoxd3_Promoter,2,74711739,74711788,74711739,74711740,50,+,CGCTTGCGAGCTGTATGTGCAAAATCCGCAAGGAATTGCAGTAAATTCCT,Promoter (<=1kb),2,74711927,74748271,36345,1,Hoxd3-203,-139,Hoxd3-203;Hoxd4-203;Hoxd8-203;Hoxd8-201;Hoxd8-202,Hoxd3;Hoxd4;Hoxd8;Hoxd8;Hoxd8,0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,7,24,15434,ENSMUSG00000079277,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23243,cg25625665,0.0000358,0.00000686,5.21136491,0.000000343,gain,yes,-0.0000279,0.0000117,-2.393041977,0.017304081,neg,ns,-0.005933562,0.003416283,-1.73684707,0.083407498,neg,ns,1.078794906,0.00020809,0.000117486,1.771191103,0.077511429,pos,ns,0.787550014,Eri3,Eri3_Intron,4,117589657,117589706,117589657,117589658,50,+,CGGGTGCAGAGGCTGCACTGGGTAATGATTCCTAATCAGAATAATTACAA,"Intron (Eri3-201/Eri3, intron 5 of 8)",4,117550365,117674297,123933,1,Eri3-201,39292,Eri3-201;Eri3-206;Eri3-202;Eri3-204,Eri3;Eri3;Eri3;Eri3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,82,97,140546,ENSMUSG00000033423,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11657,cg01180566,0.0000007,0.00000119,0.586606271,0.557895084,gain,ns,-0.00000485,0.00000203,-2.392791104,0.017315696,neg,ns,-0.000651245,0.000593552,-1.097198549,0.273406145,neg,ns,0.563191729,-0.0000412,0.0000204,-2.018505061,0.044399509,neg,ns,0.961583972,Parp6,Parp6_threeUTR,9,59649945,59649994,59649945,59649946,50,+,CGATGCCAACATTAATACTCAGGACCCCAAGATACAGAAGGAAATCATGC,3' UTR,9,59617284,59650285,33002,1,Parp6-201,32661,Parp6-201;Parp6-202;Parp6-208;Parp6-203;Parp6-210;Parp6-205;Parp6-212,Parp6;Parp6;Parp6;Parp6;Parp6;Parp6;Parp6,0;0;0;0;0;0;1748,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,5,67287,ENSMUSG00000025237,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
14378,cg07054032,-0.0000105,0.0000199,-0.529369793,0.596927819,loss,ns,0.0000809,0.0000338,2.392605064,0.017324314,pos,ns,0.058550831,0.009900853,5.913716095,8.83E-09,pos,ns,8.05407065,-0.000426866,0.000340489,-1.253684265,0.210901417,neg,ns,0.659830857,Smad7,Smad7_Exon,18,75394283,75394332,75394331,75394332,50,-,TGAAGGGCTGGGGCCAGTGCTACACCCGCCAGTTCATCAGCAGCTGCCCG,"Exon (Smad7-201/Smad7, exon 4 of 4)",18,75367529,75395935,28407,1,Smad7-201,26754,Smad7-201;Smad7-202;Smad7-205;Smad7-204;Smad7-203,Smad7;Smad7;Smad7;Smad7;Smad7,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,Exon,9,19,17131,ENSMUSG00000025880,conserved gene and region,18,75394309,75394451,143,*,143,10,0.608391608,0.760638298,0.06993007,0.00000182,CpGisland,TRUE,U10,Tr-S
1151,cg16178942,-0.0000107,0.00000457,-2.34772936,0.019516716,loss,ns,-0.0000186,0.00000776,-2.392350276,0.017336123,neg,ns,-0.006039835,0.002273768,-2.656310608,0.008308879,neg,ns,2.080457565,0.0000248,0.0000782,0.316771822,0.75162996,pos,ns,0.879061678,Arhgef7,Arhgef7_Exon,8,11824597,11824646,11824597,11824598,50,+,CGTTTGGAGCCTTCAGACCTCTCGGAAGACTCTGACTATGACAGTATATG,"Exon (Arhgef7-205/Arhgef7, exon 19 of 19)",8,11728105,11827149,99045,1,Arhgef7-205,96492,Arhgef7-205;Arhgef7-201;Arhgef7-202;Arhgef7-203;Arhgef7-204,Arhgef7;Arhgef7;Arhgef7;Arhgef7;Arhgef7,0;96420;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,54126,ENSMUSG00000031511,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4530,cg08661762,0.00000639,0.0000272,0.235058374,0.814318619,gain,ns,0.000110477,0.0000462,2.391986481,0.017352995,pos,ns,0.002496299,0.013530962,0.184487901,0.853751346,pos,ns,0.068668598,0.00023484,0.000465329,0.504675374,0.614145406,pos,ns,0.365856833,Mnx1,Mnx1_Promoter,5,29487661,29487710,29487661,29487662,50,+,CGATAGAATCATTCGATGCCTTTTAGCTTGTGATCTTTATAAATGTCCCT,Promoter (9-10kb),5,29473261,29478470,5210,2,Mnx1-201,-9191,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,6,8,15285,ENSMUSG00000001566,mapped to different genes,5,29487637,29487864,228,*,228,12,0.346491228,1.753846154,0.052631579,0.00000229,CpGisland,TRUE,U13,Hc-P
19153,cg22786456,-0.0000201,0.00000883,-2.280805199,0.023238284,loss,ns,0.0000359,0.000015,2.391980434,0.017353276,pos,ns,0.011403128,0.004396281,2.593812501,0.009942395,pos,ns,2.002508966,-0.000465318,0.000151188,-3.077749195,0.002271987,neg,ns,0.857552419,Gm27034,Gm27034_Intergenic_upstream,14,98683483,98683532,98683531,98683532,50,+,TGTAGAAGCCAGGCTTAATTGCAATCAAATTTGCTTAATTATGCATGGCG,Distal Intergenic,14,98714813,98715752,940,1,Gm27034-201,-31281,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,5,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13348,cg22951580,0.000033,0.00000913,3.619241591,0.000344934,gain,ns,0.0000371,0.0000155,2.391708604,0.017365893,pos,ns,0.016212923,0.004542733,3.56897998,0.00041513,pos,ns,3.38181631,0.0000169,0.000156224,0.108263958,0.913856351,pos,ns,0.297323503,Nr2f2,Nr2f2_Intron,7,70279654,70279703,70279654,70279655,50,-,CGCTGTGCTAAATTATGAACCAAAGGCTTTGGGGTGGGAACAATCAATCA,"Intron (Gm29683-202/Gm29683-202, intron 1 of 3)",7,70353074,70355237,2164,2,Nr2f2-203,75583,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,69,11819,ENSMUSG00000030551,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
2027,cg16004878,-0.00000911,0.000004,-2.279450169,0.023319631,loss,ns,0.0000162,0.00000679,2.391631428,0.017369477,pos,ns,0.004157018,0.001989733,2.089233893,0.037501797,pos,ns,1.425947916,-0.00013185,0.0000684,-1.926879599,0.05490844,neg,ns,0.93403436,Gm12015,Gm12015_Intergenic_upstream,11,17370737,17370786,17370785,17370786,50,+,GATACAGTAAATGCCACAATGATGAAGCTGTTTAAGATCTGGTGCTCACG,Distal Intergenic,11,17297577,17298419,843,2,Gm12015-201,-72318,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,6,382486,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14522,cg24401448,-0.000012,0.00000733,-1.632018413,0.103690967,loss,ns,-0.0000298,0.0000125,-2.391589406,0.017371428,neg,ns,-0.009446335,0.003650574,-2.587630059,0.010118674,neg,ns,1.9948764,0.0000855,0.000125543,0.681349221,0.496159209,pos,ns,0.90734859,Ptprd,Ptprd_Intron,4,76239167,76239216,76239215,76239216,50,+,CAAGCAGCTGTGCTTTGTTCTTTAATGTTCCTAGCCTGGATCTCCAGCCG,"Intron (Ptprd-206/Ptprd, intron 4 of 35)",4,75941238,76449980,508743,2,Ptprd-206,210764,Ptprd-206;Ptprd-213;Ptprd-220;Ptprd-203;Ptprd-217;Ptprd-218;Ptprd-219;Ptprd-201;Ptprd-205;Ptprd-202,Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,32,19266,ENSMUSG00000028399,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2138,cg13107977,0.00000329,0.00000948,0.347284024,0.728613605,gain,ns,0.0000385,0.0000161,2.391380194,0.017381147,pos,ns,0.006958672,0.004717643,1.475031382,0.141218984,pos,ns,0.850106919,-0.000109271,0.000162239,-0.673517617,0.501119876,neg,ns,0.819353745,Bhlhe22,Bhlhe22_Intergenic_downstream,3,18060109,18060158,18060109,18060110,50,-,CGTTTAACTGTTAATGGTGTGCTCTGGGCACATTTACGTATTTGATGCTA,Downstream (2-3kb),3,18054174,18057517,3344,1,Bhlhe22-201,5984,Bhlhe22-201,Bhlhe22,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,6,22,59058,ENSMUSG00000025128,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25684,cg10509379,-0.0000242,0.00000802,-3.017768581,0.002757598,loss,ns,0.0000326,0.0000136,2.391196663,0.017389677,pos,ns,0.008625718,0.00398961,2.162045176,0.031379511,pos,ns,1.503353823,-0.000292425,0.000137202,-2.131343205,0.033847246,neg,ns,0.842306503,Lmo3,Lmo3_Intron,6,138379570,138379619,138379570,138379571,50,-,CGCTAGCTGAGCATTTATCAGCTACCTGATTAGAATTTGTTTCCACACAA,"Intron (Lmo3-204/Lmo3, intron 3 of 4)",6,138362918,138581968,219051,2,Lmo3-204,202349,Lmo3-204;Lmo3-207;Lmo3-201;Lmo3-206;Lmo3-202;Lmo3-208;Lmo3-203,Lmo3;Lmo3;Lmo3;Lmo3;Lmo3;Lmo3;Lmo3,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,38,109593,ENSMUSG00000030226,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26122,cg20152168,0.0000136,0.0000059,2.308123564,0.021650262,gain,ns,-0.000024,0.00001,-2.391038224,0.017397043,neg,ns,0.005572886,0.00293797,1.896848943,0.058777211,pos,ns,1.230791028,-0.000264787,0.000101037,-2.620702831,0.00920724,neg,ns,0.503246223,Sox5,Sox5_Intron,6,144056937,144056986,144056937,144056938,50,+,CGGCCGAGTACAGTCACTATATTCACTCAAATTGGCAACAGGTCTCAGTG,"Intron (Sox5-201/Sox5, intron 3 of 14)",6,143828425,144209480,381056,2,Sox5-201,152494,Sox5-201;Sox5-214;Sox5-205;Sox5-202;Sox5-209;Sox5-207;Sox5-210,Sox5;Sox5;Sox5;Sox5;Sox5;Sox5;Sox5,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,71,20678,ENSMUSG00000041540,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7745,cg00930337,0.00000567,0.0000107,0.531174426,0.595678279,gain,ns,-0.0000434,0.0000181,-2.390766854,0.017409667,neg,ns,0.029886672,0.005314979,5.62310284,4.19E-08,pos,ns,7.378019815,-0.000817629,0.000182782,-4.473255821,0.0000108,neg,ns,0.356851397,Cd83,Cd83_Intergenic_downstream,13,44043723,44043772,44043771,44043772,50,-,ACGAGCTGCATGCATGCCAAATCAGGTCATTCACAAATATAGAACAAACG,Distal Intergenic,13,43785185,43803128,17944,1,Cd83-202,258587,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,3,12522,ENSMUSG00000015396,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
55,cg07010211,0.0000589,0.00000639,9.215723278,4.84E-18,gain,yes,-0.0000259,0.0000109,-2.39067047,0.017414153,neg,ns,0.008573206,0.003179571,2.696340359,0.007393676,pos,ns,2.13113956,-0.000324747,0.000109345,-2.969923434,0.003211376,neg,ns,0.07134173,Lrp5,Lrp5_Promoter,19,3685603,3685652,3685651,3685652,50,-,TGCTTGAAAAACCACATGGCAATCTCCAAATTAAAAGAACATGTGTAGCG,Promoter (<=1kb),19,3584828,3686556,101729,2,Lrp5-201,904,Lrp5-201;Lrp5-204;Lrp5-202,Lrp5;Lrp5;Lrp5,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,1,2,16973,ENSMUSG00000024913,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
1815,cg08379111,-0.0000029,0.0000059,-0.491812459,0.623199991,loss,ns,0.000024,0.00001,2.39061618,0.01741668,pos,ns,0.004217092,0.00293552,1.436574062,0.15184748,pos,ns,0.81859241,-0.000178491,0.000100952,-1.768074505,0.078032003,neg,ns,0.854249535,Foxp2,Foxp2_threeUTR,6,15405577,15405626,15405577,15405578,50,-,CGTCTTCAAGCAATGATGACCCACTTGCACATGCGACCCTCAGAGCCCAA,3' UTR,6,14901349,15441977,540629,1,Foxp2-207,504228,Foxp2-207;Foxp2-213;Foxp2-205;Foxp2-204;Foxp2-201;Foxp2-209;Foxp2-202;Foxp2-206,Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,10,65,114142,ENSMUSG00000029563,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3002,cg13466539,0.00000302,0.00000592,0.509288803,0.610912128,gain,ns,-0.0000241,0.0000101,-2.390270049,0.017432799,neg,ns,0.001532893,0.002948185,0.519944607,0.603473267,pos,ns,0.219341964,-0.00000985,0.000101388,-0.097136648,0.922680647,neg,ns,0.807480157,Ehbp1,Ehbp1_Exon,11,22285515,22285564,22285563,22285564,50,+,TCCTGGTAGGAGGCCACAAACTGGAACTTGGATGCATGTTTTCCCACACG,Promoter (<=1kb),11,22005828,22285838,280011,2,Ehbp1-201,274,Ehbp1-201;Ehbp1-202;Ehbp1-207;Ehbp1-203;Ehbp1-205,Ehbp1;Ehbp1;Ehbp1;Ehbp1;Ehbp1,0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,45,216565,ENSMUSG00000042302,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3979,cg21356348,0.000141186,0.0000288,4.896517667,0.00000157,gain,yes,0.00011706,0.000049,2.389709281,0.017458941,pos,ns,0.035408276,0.01435095,2.467312354,0.014153237,pos,ns,1.849144213,-0.000683766,0.000493528,-1.385466239,0.166905959,neg,ns,0.694744716,5730522E02Rik,5730522E02Rik_Intron,11,26104074,26104123,26104074,26104075,50,+,CGGAAATGTTACAGTTATTTTACTGGATCCAATTAGTATTTCATTGTTTT,"Intron (5730522E02Rik-202/5730522E02Rik, intron 1 of 5)",11,25617668,26210569,592902,2,5730522E02Rik-202,106446,5730522E02Rik-202;5730522E02Rik-201;5730522E02Rik-203,5730522E02Rik;5730522E02Rik;5730522E02Rik,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,90,70626,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14352,cg09235324,-0.00000354,0.00000392,-0.902399563,0.367545267,loss,ns,0.0000159,0.00000666,2.389531967,0.017467214,pos,ns,0.005728577,0.00195213,2.934526651,0.003590029,pos,ns,2.444902086,-0.000161307,0.0000671,-2.402772097,0.01685886,neg,ns,0.925058358,Ltbp1,Ltbp1_Exon,17,75276387,75276436,75276435,75276436,50,-,CAAATCTAGCTGCTTTTAAGGAAATCTGTCCTGGTGGAATGGGTTATACG,"Exon (Ltbp1-210/Ltbp1, exon 13 of 35)",17,75005568,75391328,385761,1,Ltbp1-210,270819,Ltbp1-210;Ltbp1-201;Ltbp1-205;Ltbp1-203;Ltbp1-202,Ltbp1;Ltbp1;Ltbp1;Ltbp1;Ltbp1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,9,268977,ENSMUSG00000001870,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1860,cg23774400,0.0000595,0.0000107,5.563297812,5.73E-08,gain,yes,-0.0000434,0.0000182,-2.389514992,0.017468006,neg,ns,0.013607183,0.005326352,2.554690931,0.011105834,pos,ns,1.954448816,-0.000516669,0.000183173,-2.820662611,0.005101446,neg,ns,0.510566507,Gli3,Gli3_Intron,13,15664905,15664954,15664953,15664954,50,+,CTGAAAGCTCTTAAATCCTGACAAGTTCTCCCCTTGTTCTGGTTCAGTCG,"Intron (Gli3-202/Gli3, intron 10 of 11)",13,15463235,15715091,251857,1,Gli3-202,201670,Gli3-202;Gli3-203;Gli3-201,Gli3;Gli3;Gli3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,19,21,14634,ENSMUSG00000021318,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15667,cg11226818,-0.00000276,0.0000014,-1.969633029,0.049770509,loss,ns,0.00000569,0.00000238,2.389496448,0.017468872,pos,ns,0.001274053,0.000697106,1.827631363,0.068566024,pos,ns,1.163891036,0.000000269,0.000024,0.011207454,0.991065142,pos,ns,0.033221726,Hcfc2,Hcfc2_fiveUTR,10,82699126,82699175,82699174,82699175,50,-,GGGGCGGGGGTTGGGAAGATGGCGGCTCCCAGCCTCCTCAACTGGAGGCG,5' UTR,10,82696160,82709057,12898,1,Hcfc2-203,2966,Hcfc2-203;Hcfc2-201;Hcfc2-204,Hcfc2;Hcfc2;Hcfc2,0;0;-36,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,1,67933,ENSMUSG00000020246,conserved gene but different region,10,82698963,82699663,701,*,701,86,0.731811698,0.921100076,0.122681883,8.89E-74,CpGisland,TRUE,U2,Pr-W
14513,cg24896615,-0.00000114,0.00000173,-0.659338898,0.510167657,loss,ns,0.00000702,0.00000294,2.389458705,0.017470633,pos,ns,0.002228906,0.000860378,2.590610612,0.010033344,pos,ns,1.998554298,-0.0000601,0.0000296,-2.032455034,0.042959713,neg,ns,0.956595477,Ptprd,Ptprd_Intron,4,76137034,76137083,76137034,76137035,50,-,CGTCGATTCAATCTCTTGCTAAGTTGCACAGACAGAAAATGATGCGATGA,"Intron (Ptprd-206/Ptprd, intron 7 of 35)",4,75941238,76449980,508743,2,Ptprd-206,312897,Ptprd-206;Ptprd-204;Ptprd-213;Ptprd-220;Ptprd-203;Ptprd-217;Ptprd-218;Ptprd-219;Ptprd-201;Ptprd-221;Ptprd-205;Ptprd-202,Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd,0;0;0;0;0;0;0;0;0;-2891;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,32,19266,ENSMUSG00000028399,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23429,cg25710138,0.000051,0.0000121,4.198414647,0.0000352,gain,ns,-0.0000493,0.0000206,-2.38924211,0.017480746,neg,ns,0.009269989,0.006046196,1.53319347,0.126248078,pos,ns,0.898775225,-0.000399256,0.000207928,-1.920162524,0.055754736,neg,ns,0.561249553,Dpyd,Dpyd_Intergenic_upstream,3,118430002,118430051,118430050,118430051,50,+,GGTCCTTTCCCATTGGGAAGTCATGAATAAGAGACTATGAAGCTTGCACG,Distal Intergenic,3,118562129,119432924,870796,1,Dpyd-201,-132078,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,29,99586,ENSMUSG00000033308,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
12251,cg21526212,-0.00000113,0.0000015,-0.755780977,0.450354415,loss,ns,0.00000609,0.00000255,2.388155399,0.017531561,pos,ns,0.001340509,0.000746724,1.795185803,0.073598045,pos,ns,1.133133722,-0.0000402,0.0000257,-1.563760809,0.118893977,neg,ns,0.02595868,Ptch1,Ptch1_Intron,13,63566354,63566403,63566354,63566355,50,+,CGATTGGCTCGCGGAGGGCAGAAATTACTCAGCAAACATGACTATTATTA,"Intron (Ptch1-204/Ptch1, intron 1 of 23)",13,63508329,63573460,65132,2,Ptch1-204,7057,Ptch1-201;Ptch1-204;Ptch1-206;Ptch1-202;Ptch1-207;Ptch1-203;Ptch1-205,Ptch1;Ptch1;Ptch1;Ptch1;Ptch1;Ptch1;Ptch1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,36,19206,ENSMUSG00000021466,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
27160,cg02117523,0.000000872,0.00000133,0.653138645,0.514151003,gain,ns,0.00000542,0.00000227,2.388048335,0.017536574,pos,ns,0.002353255,0.000664321,3.542346337,0.000457557,pos,ns,3.339554655,-0.000055,0.0000228,-2.408784852,0.016588813,neg,ns,0.965826248,Wls,Wls_Intron,3,159851599,159851648,159851647,159851648,50,-,GTCTGGGAACTGGGACTGAAGCCCTCCAAAGTTGTTAATTTAATCAACCG,"Intron (Wls-201/Wls, intron 1 of 11)",3,159839672,159936023,96352,1,Wls-201,11927,Wls-201;Wls-205;Wls-207;Wls-204;Wls-206;Wls-202;Wls-203,Wls;Wls;Wls;Wls;Wls;Wls;Wls,0;0;0;0;0;0;3148,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,3,68151,ENSMUSG00000028173,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18443,cg09236841,-0.00000469,0.00000275,-1.705780397,0.089050604,loss,ns,0.0000112,0.00000467,2.38788071,0.017544426,pos,ns,0.002705752,0.001369525,1.975686999,0.049076798,pos,ns,1.309123783,-0.0000866,0.0000471,-1.839082114,0.066859386,neg,ns,0.951417532,Trpc1,Trpc1_threeUTR,9,95736851,95736900,95736851,95736852,50,+,CGATGATTAAGTAGTATATCAACAGCTCCCACTACTTCAGAGTCGATTGC,3' UTR,9,95705082,95750358,45277,2,Trpc1-204,13458,Trpc1-204;Trpc1-201;Trpc1-206;Trpc1-207;Trpc1-202,Trpc1;Trpc1;Trpc1;Trpc1;Trpc1,0;0;0;0;-4642,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,5,22063,ENSMUSG00000032839,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24370,cg22690127,-0.00000241,0.00000354,-0.680555903,0.496660509,loss,ns,-0.0000143,0.00000601,-2.387856547,0.017545558,neg,ns,0.002167662,0.001760392,1.231352184,0.21912449,pos,ns,0.659309082,-0.0000307,0.0000605,-0.506327486,0.612986668,neg,ns,0.844929043,Zfp384,Zfp384_Exon,6,125031774,125031823,125031822,125031823,50,-,CACTCGGGGGCCAAGCCCTACAACTGTTCCTACTGCCAGAAGGCCTTCCG,"Exon (Zfp384-214/Zfp384, exon 9 of 12)",6,125009145,125036180,27036,1,Zfp384-210,22629,Zfp384-210;Zfp384-202;Zfp384-214;Zfp384-208;Zfp384-213;Zfp384-207;Zfp384-201;Zfp384-204;Zfp384-206;Zfp384-212;Zfp384-203;Zfp384-205;Zfp384-215;Zfp384-211,Zfp384;Zfp384;Zfp384;Zfp384;Zfp384;Zfp384;Zfp384;Zfp384;Zfp384;Zfp384;Zfp384;Zfp384;Zfp384;Zfp384,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,6,269800,ENSMUSG00000038346,conserved gene and region,6,125031822,125031948,127,*,127,10,0.732283465,0.612934363,0.078740158,0.000000615,CpGisland,TRUE,U10,Tr-S
4541,cg18932952,0.00000135,0.00000854,0.157873222,0.874659484,gain,ns,-0.0000347,0.0000145,-2.387818491,0.017547341,neg,ns,0.009617189,0.004252755,2.261402237,0.024427037,pos,ns,1.612129217,0.0000591,0.000146252,0.404139058,0.686389131,pos,ns,0.697780309,Irf5,Irf5_Exon,6,29531199,29531248,29531247,29531248,50,-,GGTGGCCCAGGTGAACAGCTGCCAGTACCCAGGGCTTCAATGGGTCAACG,Promoter (<=1kb),6,29531248,29535346,4099,1,Irf5-204,0,Irf5-201;Irf5-205;Irf5-203;Irf5-202;Irf5-204,Irf5;Irf5;Irf5;Irf5;Irf5,0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,27056,ENSMUSG00000029771,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4254,cg21969011,0.0000471,0.0000153,3.077110444,0.002276715,gain,ns,0.0000621,0.000026,2.387734115,0.017551295,pos,ns,0.010012402,0.007624997,1.313102467,0.190119565,pos,ns,0.720973189,0.0000684,0.000262223,0.261034336,0.794239354,pos,ns,0.584158249,Tpm3-rs2,Tpm3-rs2_Intergenic_downstream,4,27988092,27988141,27988092,27988093,50,-,CGCATCGTTGTGTAAAGAAATTGAAATGGAATCCTACTTGACCCAGCAGG,Distal Intergenic,4,27996583,27996905,323,2,Tpm3-rs2-201,8813,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,3,625912,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26927,cg10735971,0.0000378,0.000026,1.458037443,0.145842555,gain,ns,0.000105258,0.0000441,2.387503594,0.017562102,pos,ns,0.024521724,0.012916015,1.898551732,0.058551919,pos,ns,1.232458866,0.000115551,0.000444181,0.26014443,0.794925067,pos,ns,0.334859382,Cacna1e,Cacna1e_fiveUTR,1,154725910,154725959,154725958,154725959,50,-,AGCGAGCCATCCTGAGGTTTAAACAGACAGAAGACACACAAAGGTGATCG,Promoter (<=1kb),1,154392519,154725920,333402,2,Cacna1e-201,0,Cacna1e-203;Cacna1e-201;Cacna1e-207;Cacna1e-206;Cacna1e-209;Cacna1e-204,Cacna1e;Cacna1e;Cacna1e;Cacna1e;Cacna1e;Cacna1e,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,9,19,12290,ENSMUSG00000004110,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
5420,cg26029998,0.0000198,0.0000102,1.946474086,0.05250097,gain,ns,0.0000412,0.0000172,2.387311509,0.017571111,pos,ns,0.013761187,0.005051861,2.723983458,0.006815798,pos,ns,2.166483265,-0.000312113,0.000173733,-1.796511318,0.073386682,neg,ns,0.722318576,Ccdc39,Ccdc39_Intergenic_upstream,3,33905724,33905773,33905724,33905725,50,-,CGATGCGTCCATTAGTTCTTCATTAAAGCAAGATTAAATTGCACGGCAAA,Distal Intergenic,3,33837994,33844310,6317,2,Ccdc39-202,-61463,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,5,51938,ENSMUSG00000027676,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20824,cg11742933,-0.0000666,0.00000592,-11.24541715,7.79E-25,loss,yes,0.000024,0.0000101,2.387231422,0.017574869,pos,ns,0.010214513,0.002946812,3.466292837,0.000602173,pos,ns,3.220278963,-0.00057024,0.000101341,-5.626964151,0.000000041,neg,yes,0.913679696,Apbb1,Apbb1_threeUTR,7,105565540,105565589,105565588,105565589,50,+,CAGATCTCATGCAGGCTGGTGGCGATGTTCTTGGCAGGTGCCTCACAGCG,3' UTR,7,105558483,105581653,23171,2,Apbb1-217,16064,Apbb1-217;Apbb1-209;Apbb1-215;Apbb1-212;Apbb1-219;Apbb1-201;Apbb1-208;Apbb1-214;Apbb1-213;Apbb1-205;Apbb1-221;Apbb1-218;Apbb1-202;Apbb1-210;Apbb1-207;Apbb1-206;Apbb1-220;Apbb1-204;Apbb1-203;Apbb1-216,Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1,0;0;0;0;0;0;0;0;0;0;0;-35;0;0;3374;3676;3682;3684;0;3081,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,8,11785,ENSMUSG00000037032,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14836,cg19054002,-0.0000147,0.00000713,-2.066177015,0.039642179,loss,ns,-0.0000289,0.0000121,-2.387085114,0.017581735,neg,ns,-0.015000417,0.003548426,-4.227343959,0.0000311,neg,ns,4.506572667,0.000208577,0.00012203,1.709224113,0.088410225,pos,ns,0.812991445,Sez6,Sez6_Intron,11,77920283,77920332,77920283,77920284,50,+,CGCTTTTCTGGGCTGGAGATTATGTCATAAATAAAGAGATTTGCTCCCTA,"Intron (Gm11190-201/Gm11190-201, intron 1 of 2)",11,77930800,77979048,48249,1,Sez6-202,-10468,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,9,20370,ENSMUSG00000000632,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1082,cg22763835,0.0000733,0.0000112,6.524409083,2.78E-10,gain,yes,-0.0000456,0.0000191,-2.387074134,0.01758225,neg,ns,0.002265205,0.00559375,0.404952943,0.685791395,pos,ns,0.163807969,-0.000015,0.000192369,-0.077889063,0.937966549,neg,ns,0.604200506,Virma,Virma_Exon,4,11526903,11526952,11526903,11526904,50,+,CGTTTGGATAGTGATGAACAGAAAATTCAGAATGATATCATTGATATTTT,"Exon (Virma-201/Virma, exon 13 of 13)",4,11485958,11527621,41664,1,Virma-201,40945,Virma-201;Virma-202;Virma-203,Virma;Virma;Virma,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,66185,ENSMUSG00000040720,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25985,cg05470773,-0.00000774,0.00000302,-2.562877218,0.010852784,loss,ns,-0.0000122,0.00000513,-2.387035552,0.017584061,neg,ns,-0.003508134,0.001502409,-2.335006364,0.02018105,neg,ns,1.695056237,-0.00000895,0.0000517,-0.173215195,0.862595324,neg,ns,0.874613999,Pkn2,Pkn2_threeUTR,3,142811978,142812027,142812026,142812027,50,+,AAATCTTCTAACCTCAGAAATTTTACAGCACACAGAGACCGCCAATCACG,3' UTR,3,142790902,142882004,91103,2,Pkn2-201,69977,Pkn2-201;Pkn2-207;Pkn2-206;Pkn2-210;Pkn2-202;Pkn2-203;Pkn2-205;Pkn2-209;Pkn2-211,Pkn2;Pkn2;Pkn2;Pkn2;Pkn2;Pkn2;Pkn2;Pkn2;Pkn2,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,4,109333,ENSMUSG00000004591,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17424,cg16909474,0.0000128,0.00000392,3.258081279,0.001246159,gain,ns,-0.0000159,0.00000666,-2.386341369,0.017616675,neg,ns,0.004732585,0.001949908,2.427081354,0.015790409,pos,ns,1.80160661,-0.000215675,0.0000671,-3.216284483,0.001435764,neg,ns,0.902397524,Ankrd17,Ankrd17_threeUTR,5,90228907,90228956,90228955,90228956,50,+,GCCATTCTAAAACTTCAGGATCAAGTTTACATAATTTTGCTAAATTTCCG,3' UTR,5,90227166,90366577,139412,2,Ankrd17-201,137621,Ankrd17-201;Ankrd17-204;Ankrd17-203;Ankrd17-202;Ankrd17-205;Cox18-202;Cox18-201;Cox18-206,Ankrd17;Ankrd17;Ankrd17;Ankrd17;Ankrd17;Cox18;Cox18;Cox18,0;0;0;0;0;-4935;-4906;-4968,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,12,81702,ENSMUSG00000055204,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7530,cg00585163,0.0000104,0.0000104,1.002706937,0.31678431,gain,ns,0.0000421,0.0000176,2.386206483,0.017623019,pos,ns,0.010176132,0.005167382,1.969301325,0.049808756,pos,ns,1.302694307,-0.000121364,0.000177706,-0.682946069,0.49515098,neg,ns,0.23949629,Sobp,Sobp_Exon,10,43022669,43022718,43022717,43022718,50,-,CATCTGTTAGCGGGATATTCCAAGAGTCTGGAGTGAGCAGCTGCACCCCG,"Exon (Sobp-201/Sobp, exon 6 of 7)",10,43002500,43174530,172031,2,Sobp-201,151812,Sobp-201,Sobp,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,19,109205,ENSMUSG00000038248,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
16689,cg13305004,-0.00000101,0.00000156,-0.648696107,0.517015069,loss,ns,0.00000633,0.00000265,2.386184847,0.017624036,pos,ns,0.00269485,0.000776788,3.46922243,0.000595889,pos,ns,3.224834906,-0.0000839,0.0000267,-3.142170498,0.001839027,neg,ns,0.959654616,Htr2b,Htr2b_Exon,1,86102421,86102470,86102469,86102470,50,+,CCTATTGAAATTAACCACACCACTGTAATCTTGATGAATGCTGTAGCCCG,"Exon (Htr2b-201/Htr2b, exon 3 of 4)",1,86099026,86111970,12945,2,Htr2b-201,9500,Htr2b-201;Htr2b-202;Psmd1-204;Psmd1-201,Htr2b;Htr2b;Psmd1;Psmd1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,15559,ENSMUSG00000026228,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19006,cg01483295,-0.00000184,0.00000133,-1.382161259,0.167917251,loss,ns,0.00000539,0.00000226,2.385990918,0.017633161,pos,ns,0.000952695,0.00066205,1.439007311,0.151157356,pos,ns,0.820570714,-0.0000132,0.0000228,-0.581873308,0.561074917,neg,ns,0.968228387,Med1,Med1_Exon,11,98158157,98158206,98158205,98158206,50,-,AAGAATTGGGTTCTGAGACACCTTGCTGAAGTCCTCCCCATGGCCCACCG,"Exon (Med1-203/Med1, exon 17 of 17)",11,98152154,98193260,41107,2,Med1-202,35054,Med1-202;Med1-203;Med1-204;Med1-201;Med1-207,Med1;Med1;Med1;Med1;Med1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,13,19014,ENSMUSG00000018160,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13416,cg17333501,-8.35E-08,0.0000099,-0.008432499,0.993277343,loss,ns,0.0000401,0.0000168,2.38565254,0.017649091,pos,ns,0.003741176,0.004926286,0.759431329,0.448171671,pos,ns,0.348555598,-0.0000013,0.000169415,-0.007702659,0.993859183,neg,ns,0.526404619,Myo3b,Myo3b_Intron,2,70425853,70425902,70425853,70425854,50,+,CGGTGAATAATTGATGTGGTTTATCAAAGACGAGCAAGATGCATGCTTCA,"Intron (Myo3b-201/Myo3b, intron 33 of 34)",2,70039126,70429195,390070,1,Myo3b-201,386727,Myo3b-201;Myo3b-203,Myo3b;Myo3b,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,6,329421,ENSMUSG00000042064,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18471,cg13179300,-0.00000708,0.00000696,-1.017845,0.309545327,loss,ns,-0.0000282,0.0000118,-2.385503167,0.017656127,neg,ns,-0.002830944,0.003462054,-0.817706499,0.414152835,neg,ns,0.382839361,-0.0000451,0.00011906,-0.37866157,0.705198391,neg,ns,0.787230485,Prpf3,Prpf3_Exon,3,95835448,95835497,95835448,95835449,50,-,CGTTGGCCTCTTCATGCGCTCTGTCGTGACAGGAAGGACATCCACAAGTG,"Exon (Prpf3-201/Prpf3, exon 12 of 16)",3,95830124,95855885,25762,2,Prpf3-201,20388,Prpf3-201;Prpf3-202;Prpf3-204;Prpf3-209;Prpf3-207;Prpf3-208,Prpf3;Prpf3;Prpf3;Prpf3;Prpf3;Prpf3,0;0;0;0;0;9670,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,6,70767,ENSMUSG00000015748,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1696,cg24566573,-0.0000176,0.0000028,-6.272912181,1.19E-09,loss,yes,0.0000114,0.00000476,2.385393592,0.01766129,pos,ns,0.001989806,0.001395833,1.425533081,0.155009274,pos,ns,0.809642318,-0.0000842,0.000048,-1.75398338,0.080421495,neg,ns,0.050541047,Tle4,Tle4_Intron,19,14596492,14596541,14596540,14596541,50,-,ATCAATATCGAAAGTTTGGCCTCAGCGTTTTCCAAGTCTCCCCAGTTTCG,"Intron (Tle4-201/Tle4, intron 2 of 19)",19,14448150,14598051,149902,2,Tle4-201,1510,Tle4-201;Tle4-202;Tle4-203,Tle4;Tle4;Tle4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,29,21888,ENSMUSG00000024642,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
24257,cg19617534,0.0000126,0.00000691,1.819743098,0.069762509,gain,ns,0.000028,0.0000117,2.384898267,0.017684646,pos,ns,0.001049402,0.003440721,0.304994801,0.760574781,pos,ns,0.118858079,0.0000989,0.000118326,0.835524768,0.404065802,pos,ns,0.883520667,Pou3f1,Pou3f1_Intergenic_upstream,4,124375636,124375685,124375636,124375637,50,-,CGGCTTTTGGTCCCACAATAGAGACCATTTTTGCAGCCCCCGTTCTGTTA,Distal Intergenic,4,124656807,124660655,3849,1,Pou3f1-201,-281171,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,24,85,18991,ENSMUSG00000090125,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24387,cg08026135,-0.00000701,0.00000634,-1.106941884,0.269177259,loss,ns,-0.0000257,0.0000108,-2.384788986,0.017689802,neg,ns,-0.004875344,0.003153427,-1.546046375,0.123113588,neg,ns,0.909694011,-0.0000519,0.000108446,-0.478717927,0.632476779,neg,ns,0.914461834,Chd4,Chd4_Exon,6,125120268,125120317,125120316,125120317,50,-,GAGAAATTGCTGCGGCACCATTATGAGCAGCAGCAAGAAGATCTAGCCCG,"Exon (Chd4-203/Chd4, exon 26 of 39)",6,125095981,125130585,34605,1,Chd4-203,24287,Chd4-203;Chd4-201;Chd4-202;Chd4-204;Chd4-205,Chd4;Chd4;Chd4;Chd4;Chd4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,15,107932,ENSMUSG00000063870,conserved gene but different region,6,125120280,125120502,223,*,223,12,0.596412556,0.612918003,0.053811659,0.00000182,CpGisland,TRUE,U10,Tr-S
13377,cg16951263,0.000164445,0.0000246,6.677468741,1.12E-10,gain,yes,-0.0000998,0.0000418,-2.384595803,0.017698921,neg,ns,-0.0024118,0.012257033,-0.196768688,0.844137494,neg,ns,0.073586809,0.001837259,0.000421518,4.358669756,0.0000178,pos,ns,0.390058577,Nr2f2,Nr2f2_Intergenic_downstream,7,70351729,70351778,70351777,70351778,50,+,AATGCAATAAACTTAAACCGAACTCAAGACTCTAAACAGATCCTCCTCCG,Downstream (<1kb),7,70353074,70355237,2164,2,Nr2f2-203,3459,Nr2f2-201;Nr2f2-203;Nr2f2-202;Nr2f2-205,Nr2f2;Nr2f2;Nr2f2;Nr2f2,0;0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,19,69,11819,ENSMUSG00000030551,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
18693,cg24211745,0.0000313,0.0000109,2.870656297,0.004378047,gain,ns,0.0000442,0.0000185,2.384559126,0.017700653,pos,ns,0.014651077,0.005434433,2.695971557,0.007401676,pos,ns,2.130669923,-0.000471232,0.00018689,-2.521445821,0.012188453,neg,ns,0.305476965,Skap1,Skap1_Intron,11,96742201,96742250,96742249,96742250,50,-,CCCCTAGAGGGATCCAGGAAATGAAGCTATAAGCGGTTGTCATGGAAACG,"Intron (Skap1-204/Skap1, intron 11 of 12)",11,96464593,96758941,294349,1,Skap1-204,277608,Skap1-204;Skap1-203;Skap1-201,Skap1;Skap1;Skap1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,40,46,78473,ENSMUSG00000057058,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
5058,cg01465824,-0.0000157,0.00000543,-2.89775813,0.004026186,loss,ns,-0.000022,0.00000922,-2.384277719,0.017713945,neg,ns,-0.010253259,0.002700951,-3.796165879,0.000176756,neg,ns,3.7526257,0.000290592,0.0000929,3.128494414,0.001924009,pos,ns,0.907610863,Gmds,Gmds_Exon,13,32100418,32100467,32100466,32100467,50,+,CATTCCAGTTGTCCAAGGTAAATCTTAGCTACTGACCGGCTAATTTTTCG,"Exon (Gmds-201/Gmds, exon 7 of 11)",13,31819579,32338740,519162,2,Gmds-201,238273,Gmds-201;Gmds-202,Gmds;Gmds,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,5,218138,ENSMUSG00000038372,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19127,cg13190395,-0.0000203,0.00000705,-2.883407303,0.004209153,loss,ns,0.0000285,0.000012,2.383937006,0.017730049,pos,ns,0.006673336,0.003506652,1.903050501,0.057960164,pos,ns,1.236870397,-0.000302729,0.000120593,-2.510322535,0.012571117,neg,ns,0.866527044,Gm49017,Gm49017_Intergenic_upstream,14,98570375,98570424,98570375,98570376,50,+,CGCCCACAGGAAGAGATAAAGACTTATTTGACACTAGATCTATAACCAAT,Distal Intergenic,14,98519416,98519700,285,2,Gm49017-201,-50675,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,11,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13873,cg23200871,-0.00000415,0.00000486,-0.852890093,0.394378734,loss,ns,0.0000197,0.00000826,2.383740526,0.017739342,pos,ns,0.004128266,0.002419949,1.705930976,0.089022524,pos,ns,1.050500095,-0.00011353,0.0000832,-1.364184483,0.173499081,neg,ns,0.920962201,Ola1,Ola1_Intron,2,73143964,73144013,73143964,73143965,50,-,CGGAGGGGATTAATCTAGGGGGAGAGAGTCCTCTTTAATGGCTCCAGCAG,"Intron (Ola1-201/Ola1, intron 5 of 10)",2,73092801,73214447,121647,2,Ola1-201,70434,Ola1-201;Ola1-206;Ola1-203;Ola1-202,Ola1;Ola1;Ola1;Ola1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,19,67059,ENSMUSG00000027108,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5110,cg18584184,-0.00000247,0.00000538,-0.459100191,0.646483964,loss,ns,-0.0000218,0.00000915,-2.383581061,0.017746888,neg,ns,-0.001579048,0.002679826,-0.589235156,0.556132686,neg,ns,0.254821579,0.000015,0.0000922,0.163134869,0.870518542,pos,ns,0.835515685,Akap8l,Akap8l_Exon,17,32334026,32334075,32334074,32334075,50,+,CAAGCGCCAGTGCGGGAGCCCTGAGGGCAGACAGACCCGACCAAGGGGCG,"Exon (Akap8l-206/Akap8l, exon 9 of 13)",17,32321424,32350575,29152,2,Akap8l-206,16500,Akap8l-206;Akap8l-207;Akap8l-201;Akap8l-209;Akap8l-205;Akap8l-212;Akap8l-204;Akap8l-210;Akap8l-208;Akap8l-211;Akap8l-213;Akap8l-202;Akap8l-203,Akap8l;Akap8l;Akap8l;Akap8l;Akap8l;Akap8l;Akap8l;Akap8l;Akap8l;Akap8l;Akap8l;Akap8l;Akap8l,0;0;0;0;-1127;-545;0;0;-552;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,7,54194,ENSMUSG00000002625,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6439,cg20534046,0.00000816,0.00000242,3.370132709,0.000846339,gain,ns,-0.00000981,0.00000412,-2.38353604,0.017749019,neg,ns,-0.00069209,0.001205721,-0.574005007,0.566380647,neg,ns,0.246891595,0.0000221,0.0000415,0.533027993,0.594396106,pos,ns,0.061063117,Tenm2,Tenm2_Promoter,11,37236197,37236246,37236197,37236198,50,-,CGCCCAAGCACGACCTGAGCCTGCGAGCCACCCAGGACCAATGTGCAACC,Promoter (<=1kb),11,36944205,37235964,291760,2,Tenm2-207,-282,Tenm2-202;Tenm2-207,Tenm2;Tenm2,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,6,84,23964,ENSMUSG00000049336,mapped to different genes,11,37236045,37236221,177,*,177,17,0.672316384,0.854829546,0.096045198,5.62E-13,CpGisland,TRUE,NA,NRS
1794,cg13522984,-0.00000934,0.00000466,-2.006649145,0.045655141,loss,ns,0.0000189,0.00000791,2.38342953,0.01775406,pos,ns,0.003241761,0.002317044,1.399093356,0.162784733,pos,ns,0.788386328,-0.000100758,0.0000797,-1.264491333,0.207003572,neg,ns,0.909470843,Foxp2,Foxp2_Intron,6,15282348,15282397,15282396,15282397,50,-,TTATGTTTCAGAGAGATTTTGTAGCCTTCAGCTCTCAAGAATGTGTCACG,"Intron (Foxp2-207/Foxp2, intron 4 of 18)",6,14901349,15441977,540629,1,Foxp2-207,380999,Foxp2-207;Foxp2-213;Foxp2-208;Foxp2-211;Foxp2-205;Foxp2-204;Foxp2-201;Foxp2-210;Foxp2-214;Foxp2-212;Foxp2-209;Foxp2-202;Foxp2-218,Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,38,65,114142,ENSMUSG00000029563,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10483,cg02259201,0.0000465,0.00000758,6.127986916,2.70E-09,gain,yes,0.0000307,0.0000129,2.383341056,0.01775825,pos,ns,0.011098373,0.00377358,2.941072237,0.003517071,pos,ns,2.453818851,-0.000066,0.000129773,-0.508231707,0.611652314,neg,ns,0.694398979,Npas3,Npas3_Intron,12,53837528,53837577,53837576,53837577,50,-,GACTGCATGCTGTCCGAGTGCTTGACAGAGATAATCTCAGCAATCCCACG,"Intron (Npas3-204/Npas3, intron 4 of 10)",12,53248157,54069532,821376,1,Npas3-204,589371,Npas3-204;Npas3-201;Npas3-203,Npas3;Npas3;Npas3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,83,103,27386,ENSMUSG00000021010,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19502,cg13383038,0.00000806,0.00000522,1.544008247,0.12360652,gain,ns,-0.0000211,0.00000887,-2.383264207,0.017761889,neg,ns,-0.011092232,0.002597339,-4.270614725,0.000026,neg,ns,4.585815671,0.000159765,0.0000893,1.788638485,0.074649413,pos,ns,0.761949927,Foxp1,Foxp1_Intron,6,99467356,99467405,99467404,99467405,50,-,GGCTAAGTGGACACTTGATTGAATACCACTAAGACAGCTCACATCCCACG,"Intron (Foxp1-220/Foxp1, intron 1 of 19)",6,98929189,99520997,591809,2,Foxp1-220,53592,Foxp1-220;Foxp1-224;Foxp1-227;Foxp1-216;Gm20696-201;Gm20696-203,Foxp1;Foxp1;Foxp1;Foxp1;Gm20696;Gm20696,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,87,108655,ENSMUSG00000030067,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17368,cg10669108,0.0000042,0.00000713,0.588860615,0.55638361,gain,ns,0.0000288,0.0000121,2.382825495,0.017782678,pos,ns,0.009310439,0.003546532,2.625223477,0.009088553,pos,ns,2.041505242,-0.000480549,0.000121965,-3.940058947,0.000100699,neg,ns,0.636784108,Anks1b,Anks1b_Intron,10,89903161,89903210,89903161,89903162,50,-,CGTCTGCCCAAGATAGTGTGTCTGTCAATTGTGACCTGATTTTGAAATAA,"Intron (Anks1b-233/Anks1b, intron 1 of 25)",10,89873509,90970219,1096711,1,Anks1b-233,29652,Anks1b-233;Anks1b-223;Anks1b-222;Anks1b-203,Anks1b;Anks1b;Anks1b;Anks1b,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,14,77531,ENSMUSG00000058589,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1087,cg13966205,-0.0000318,0.00000608,-5.233437624,0.000000307,loss,yes,0.0000246,0.0000103,2.382086947,0.017817723,pos,ns,-0.000200013,0.003026381,-0.06608989,0.947348861,neg,ns,0.023490063,-0.0000956,0.000104077,-0.91870022,0.358966647,neg,ns,0.577524404,Virma,Virma_Exon,4,11539964,11540013,11539964,11539965,50,+,CGGACGATGAGTATTAATGCTGCAGAGTTAAAACAGCTTCTACAAAGCAA,"Exon (Virma-202/Virma, exon 18 of 24)",4,11485958,11550684,64727,1,Virma-202,54006,Virma-202;Virma-203,Virma;Virma,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,66185,ENSMUSG00000040720,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26051,cg23545926,-0.00000361,0.00000402,-0.89837788,0.369681355,loss,ns,0.0000163,0.00000683,2.381686415,0.017836754,pos,ns,0.0063446,0.002001049,3.170637887,0.001673139,pos,ns,2.776468038,-0.000194504,0.0000688,-2.8264431,0.00501258,neg,ns,0.930576338,Gm2505,Gm2505_Intergenic_upstream,3,143434360,143434409,143434408,143434409,50,+,CAGAATTGGAGCTATTTTATCTGGACCTAATTAAACAACCTTCATTACCG,Distal Intergenic,3,143872995,143873819,825,1,Gm2505-201,-438586,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,37,100039938,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4492,cg12179493,0.000150014,0.0000152,9.885358772,3.29E-20,gain,yes,-0.0000614,0.0000258,-2.381674608,0.017837315,neg,ns,0.019114312,0.007552954,2.53070664,0.01187781,pos,ns,1.925263638,-0.000507093,0.000259745,-1.95226766,0.051806363,neg,ns,0.37584743,Spred3,Spred3_Exon,7,29167900,29167949,29167900,29167901,50,-,CGCCCCCCACAGGCAGCCAGCCCCCACTGGAGTCATCTCGGGCCATCACC,Promoter (<=1kb),7,29158829,29168647,9819,2,Spred3-201,698,Ggn-202;Ggn-201;Ggn-203;Ggn-205;Ggn-204;Spred3-201;Spred3-203;Spred3-202;Spred3-204,Ggn;Ggn;Ggn;Ggn;Ggn;Spred3;Spred3;Spred3;Spred3,-2261;-2441;-2441;-2458;-2555;0;-750;0;2462,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,7,101809,ENSMUSG00000037239,conserved gene and region,7,29167803,29167963,161,*,161,14,0.745341615,0.667851852,0.086956522,3.80E-10,CpGisland,TRUE,U13,Hc-P
7043,cg22803928,0.000116022,0.00000893,12.98949824,4.24E-31,gain,yes,-0.0000361,0.0000152,-2.381361798,0.017852191,neg,ns,-0.003926927,0.004445523,-0.883344362,0.377734755,neg,ns,0.422813054,0.0000524,0.000152881,0.342428388,0.73226058,pos,ns,0.273657414,Tfap2a,Tfap2a_threeUTR,13,40716426,40716475,40716474,40716475,50,+,ATATTTACAATTCCCATTAAATTACACATAAATAAATATATACAGAGACG,3' UTR,13,40715302,40730443,15142,2,Tfap2a-201,13968,Tfap2a-201;Tfap2a-202;Tfap2a-205;Tfap2a-203;Tfap2a-209;Tfap2a-208;Tfap2a-206;Tfap2a-204,Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,57,21418,ENSMUSG00000021359,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
18486,cg00703619,-0.0000196,0.00000976,-2.003388971,0.046005644,loss,ns,0.0000395,0.0000166,2.381344644,0.017853007,pos,ns,0.014823017,0.004859526,3.050301174,0.002483511,pos,ns,2.604933913,-0.000522429,0.000167119,-3.126094686,0.001939289,neg,ns,0.846422292,Xrn1,Xrn1_Exon,9,96011537,96011586,96011585,96011586,50,-,CAAGAAATTATTACTTGGCTAAAAGGACATCCTGTCAGTACTTTATCTCG,"Exon (Xrn1-201/Xrn1, exon 27 of 42)",9,95954760,96053027,98268,1,Xrn1-201,56777,Xrn1-201;Xrn1-202;Xrn1-204;Xrn1-209,Xrn1;Xrn1;Xrn1;Xrn1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,24127,ENSMUSG00000032410,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13747,cg10283020,-0.00000959,0.00000442,-2.166466871,0.031037207,loss,ns,0.0000179,0.00000752,2.381317788,0.017854285,pos,ns,0.006046294,0.00220214,2.745644094,0.006391833,pos,ns,2.194374584,-0.0001824,0.0000757,-2.408505928,0.016601255,neg,ns,0.925773234,Map3k20,Map3k20_Intron,2,72378771,72378820,72378819,72378820,50,+,GGTTTTGCAAAAGACTTTTTCATCTTCTTCAAATTGAAAGTAAGTTCACG,"Intron (Map3k20-201/Map3k20, intron 8 of 19)",2,72285637,72442610,156974,1,Map3k20-201,93134,Map3k20-201;Map3k20-204;Map3k20-202;Map3k20-206,Map3k20;Map3k20;Map3k20;Map3k20,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,14,18,65964,ENSMUSG00000004085,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8215,cg23729418,-0.0000469,0.0000166,-2.829438254,0.004967089,loss,ns,0.0000671,0.0000282,2.381261565,0.01785696,pos,ns,-0.003157805,0.008251603,-0.382689849,0.702211995,neg,ns,0.153531756,0.000170819,0.000283772,0.601958325,0.547641876,pos,ns,0.465794465,Gm5246,Gm5246_Intergenic_downstream,19,44874855,44874904,44874855,44874856,50,+,CGTCCTGAAAGGTGCAGCGGCTCTGAAGCTAATTAACTTCATAATGAAAA,Distal Intergenic,19,44851009,44851979,971,1,Gm5246-201,23846,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,20,383450,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5582,cg24638399,0.00000925,0.0000215,0.430964185,0.666793921,gain,ns,0.0000868,0.0000365,2.381132463,0.017863104,pos,ns,0.075594097,0.010685387,7.07453044,1.00E-11,pos,yes,10.99882442,-0.00218661,0.00036747,-5.950452162,7.22E-09,neg,yes,0.807841905,Pbx3,Pbx3_Intron,2,34287033,34287082,34287033,34287034,50,-,CGTTCATTTGATTTTCCATTTCAATTACGGATTGCACGAGGCAAAAGGAA,"Intron (Pbx3-202/Pbx3, intron 2 of 7)",2,34171457,34372038,200582,2,Pbx3-202,84956,Pbx3-202;Pbx3-201;Pbx3-210;Pbx3-206;Pbx3-207;Pbx3-209;Pbx3-204;Pbx3-205;Pbx3-203,Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,82,18516,ENSMUSG00000038718,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16985,cg22992715,0.000159158,0.0000264,6.03927247,4.43E-09,gain,yes,-0.000106593,0.0000448,-2.380819226,0.01787802,neg,ns,0.024586122,0.013116569,1.874432442,0.061811108,pos,ns,1.208933469,-0.000672533,0.000451078,-1.490948185,0.136991916,neg,ns,0.44958947,Kcnk12,Kcnk12_Exon,17,87746575,87746624,87746623,87746624,50,+,GGATGAGCAGCACGTGGTACACCGAGGGCTTCCAGCCCGCCAGGCTGTCG,"Exon (Kcnk12-201/Kcnk12, exon 2 of 2)",17,87745801,87797994,52194,2,Kcnk12-201,51370,Kcnk12-201,Kcnk12,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,210741,ENSMUSG00000050138,mapped to different genes,17,87746344,87746970,627,*,627,51,0.629984051,0.838499056,0.081339713,3.47E-34,CpGisland,TRUE,U3,Pr-B
15417,cg09462662,0.0000502,0.0000159,3.156417392,0.001754195,gain,ns,-0.0000643,0.000027,-2.380756979,0.017880985,neg,ns,0.005157146,0.00791504,0.65156288,0.515165935,pos,ns,0.288052862,-0.00052141,0.000272198,-1.915555975,0.056341413,neg,ns,0.437250821,Tnrc6b,Tnrc6b_Exon,15,80876353,80876402,80876353,80876354,50,+,CGGCCGCCAGCCCAATTGGCAGCTCTCCATCGCCACCAGTCAATGGTGGC,"Exon (Tnrc6b-201/Tnrc6b, exon 7 of 25)",15,80711313,80941085,229773,1,Tnrc6b-201,165040,Tnrc6b-201;Tnrc6b-204;Tnrc6b-207;Tnrc6b-208,Tnrc6b;Tnrc6b;Tnrc6b;Tnrc6b,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,20,24,213988,ENSMUSG00000047888,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8206,cg21166414,0.000000928,0.00000961,0.096523658,0.923167056,gain,ns,0.0000389,0.0000163,2.380640174,0.01788655,pos,ns,0.001226879,0.004783084,0.25650365,0.797732105,pos,ns,0.098142929,0.000114177,0.00016449,0.694125472,0.488123355,pos,ns,0.866095045,Gm5246,Gm5246_Promoter,19,44849630,44849679,44849678,44849679,50,+,ATTGGTCATTTAATGCTTAAGTGCACGCTAGACAGCCCTGTCATCGCCCG,Promoter (1-2kb),19,44851009,44851979,971,1,Gm5246-201,-1330,Gm5246-201,Gm5246,-1330,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,20,383450,NA,mapped to different genes,19,44849655,44849739,85,*,85,9,0.694117647,0.881336406,0.105882353,0.000000223,CpGisland,TRUE,U11,Tr-P
11494,cg05185255,0.0000236,0.00000467,5.048174831,0.000000762,gain,yes,-0.0000189,0.00000794,-2.380467019,0.017894804,neg,ns,-0.007342809,0.002325831,-3.15706957,0.0017504,neg,ns,2.756862682,0.000170232,0.00008,2.128294559,0.034101151,pos,ns,0.916568229,Nptn,Nptn_Exon,9,58618747,58618796,58618747,58618748,50,+,CGCCAGAGATCCAGTGGTGGTACGCAGAAGTCAACCGGGCAGAGTCTTTC,"Exon (Nptn-212/Nptn, exon 2 of 8)",9,58582240,58651318,69079,1,Nptn-212,36507,Nptn-212;Nptn-201;Nptn-213;Nptn-206;Nptn-203;Nptn-202;Nptn-211;Nptn-207;Nptn-204,Nptn;Nptn;Nptn;Nptn;Nptn;Nptn;Nptn;Nptn;Nptn,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,20,22,20320,ENSMUSG00000032336,conserved gene and region,9,58618678,58618932,255,*,255,20,0.6,0.879917184,0.078431373,1.96E-13,CpGisland,TRUE,NA,NRS
21306,cg15950887,-0.0000123,0.000005,-2.466449646,0.014186702,loss,ns,0.0000202,0.00000849,2.380200447,0.017907516,pos,ns,0.010474028,0.002486795,4.211858474,0.0000332,pos,ns,4.478370988,-0.00014847,0.0000855,-1.736076114,0.083543931,neg,ns,0.910937231,Nfat5,Nfat5_Exon,8,107324690,107324739,107324738,107324739,50,+,AAACATCTGTAGCATCAATGAGTCAGACAAGCGGTGGTGAGGCAGGCTCG,"Exon (Nfat5-212/Nfat5, exon 3 of 3)",8,107293470,107329307,35838,1,Nfat5-212,31220,Nfat5-212;Nfat5-213;Nfat5-214;Nfat5-206;Nfat5-210;Nfat5-211;Nfat5-203;Nfat5-201,Nfat5;Nfat5;Nfat5;Nfat5;Nfat5;Nfat5;Nfat5;Nfat5,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,17,54446,ENSMUSG00000003847,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24678,cg04317929,-0.0000647,0.0000189,-3.432201402,0.000680003,loss,ns,-0.0000762,0.000032,-2.379771926,0.017927968,neg,ns,0.036726963,0.009381892,3.914664842,0.000111347,pos,ns,3.95332108,-0.001353116,0.000322642,-4.193857012,0.0000358,neg,ns,0.647299516,Lrp1,Lrp1_Exon,10,127582675,127582724,127582723,127582724,50,+,CTTCTATGCACTGACCGGCAGGCTCAGGACAGGTCTGTTCGTCAGAGCCG,"Exon (Lrp1-207/Lrp1, exon 2 of 3)",10,127538161,127621148,82988,2,Lrp1-201,38424,Lrp1-201;Lrp1-206;Lrp1-207;Lrp1-204,Lrp1;Lrp1;Lrp1;Lrp1,0;-790;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,8,16971,ENSMUSG00000040249,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11437,cg16740993,-0.00000532,0.0000112,-0.474023735,0.635816671,loss,ns,0.0000454,0.0000191,2.37976626,0.017928239,pos,ns,0.009268224,0.005590464,1.657863235,0.098356603,pos,ns,1.00719648,-0.000469751,0.000192256,-2.443368502,0.015108459,neg,ns,0.364068727,Gm14649,Gm14649_Intergenic_downstream,X,58155491,58155540,58155539,58155540,50,+,GTCAAATGATCAAAGTCTGAACTCCTCTCTAATTGTCCCCCCGCTGCTCG,Distal Intergenic,20,58184163,58184486,324,2,Gm14649-201,28946,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,4,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8974,cg12782933,0.0000603,0.00000605,9.965733809,1.78E-20,gain,yes,-0.0000245,0.0000103,-2.379692362,0.017931768,neg,ns,0.013609523,0.003011633,4.518983932,0.00000885,pos,ns,5.053101374,-0.000228558,0.00010357,-2.206805293,0.028060357,neg,ns,0.097221437,4931429L15Rik,4931429L15Rik_Intergenic_upstream,9,46443566,46443615,46443614,46443615,50,+,CTCAGCTCAATCAGCTTGGATTAGCATAACATCAAGTCACCCATCAGACG,Distal Intergenic,9,46303361,46319986,16626,2,4931429L15Rik-201,-123580,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,12,22,74361,ENSMUSG00000056617,mapped to different genes,9,46443582,46443903,322,*,322,30,0.611801242,1.003115265,0.093167702,3.62E-22,CpGisland,TRUE,U13,Hc-P
9340,cg01088086,-0.00000302,0.00000343,-0.881077229,0.378958608,loss,ns,0.0000139,0.00000583,2.379462027,0.017942772,pos,ns,0.003676187,0.001708155,2.152139258,0.032158207,pos,ns,1.49270818,-0.000109897,0.0000587,-1.870798643,0.062314975,neg,ns,0.938424525,Slit2,Slit2_threeUTR,5,48249795,48249844,48249843,48249844,50,+,CTCTTTACTGTGATTGTAACATGCAGTGGTTATCCGACTGGGTGAAGTCG,3' UTR,5,47983138,48307733,324596,1,Slit2-208,266657,Slit2-208;Slit2-201;Slit2-202;Slit2-216;Slit2-217;Slit2-203;Slit2-204;Slit2-223;Slit2-211,Slit2;Slit2;Slit2;Slit2;Slit2;Slit2;Slit2;Slit2;Slit2,0;0;0;0;0;0;0;4593;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,11,20563,ENSMUSG00000031558,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18793,cg04953417,-0.0000142,0.00000452,-3.131278315,0.001906422,loss,ns,0.0000183,0.00000769,2.379041947,0.017962855,pos,ns,0.00253548,0.002251532,1.126113104,0.260988661,pos,ns,0.583378362,0.0000293,0.0000774,0.37806804,0.705638796,pos,ns,0.931552586,Naa11,Naa11_Intron,5,97415960,97416009,97415960,97415961,50,-,CGGCTGTCACTGGTTTCACTGACATCTGTCCCCACAGTGAGACAAGCTGC,"Intron (4930467D21Rik-202/4930467D21Rik-202, intron 2 of 4)",5,97382198,97392379,10182,2,Naa11-201,-23630,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,4,97243,ENSMUSG00000046000,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4373,cg24311761,-0.000000481,0.000001,-0.48076006,0.631026155,loss,ns,-0.00000404,0.0000017,-2.37881121,0.017973895,neg,ns,0.000468066,0.000497785,0.940298109,0.347796774,pos,ns,0.458674451,-0.0000218,0.0000171,-1.273104663,0.20393478,neg,ns,0.027233241,Srpk1,Srpk1_fiveUTR,17,28621971,28622020,28622019,28622020,50,-,ACTCACTTCCTTTGGGCTTTGTCCTTCTTGGCCTTGGTCCTTTTCTTTCG,Promoter (<=1kb),17,28587648,28622487,34840,2,Srpk1-212,467,Srpk1-212;Srpk1-204;Srpk1-211;Srpk1-213;Srpk1-210;Srpk1-208;Srpk1-206;Srpk1-202,Srpk1;Srpk1;Srpk1;Srpk1;Srpk1;Srpk1;Srpk1;Srpk1,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,4,20815,ENSMUSG00000004865,conserved gene and region,17,28622019,28622744,726,*,726,91,0.732782369,0.940146858,0.125344353,5.22E-79,CpGisland,TRUE,U1,Pr-A
2524,cg11156708,0.0000623,0.00000951,6.545642578,2.45E-10,gain,yes,-0.0000384,0.0000162,-2.378435277,0.017991895,neg,ns,0.003176565,0.004734214,0.670980325,0.502732683,pos,ns,0.29866288,0.000218734,0.000162809,1.343497689,0.180093481,pos,ns,0.836191613,Map7,Map7_Exon,10,20250387,20250436,20250435,20250436,50,+,GTTTCCACCATGAATCTTTCGAAATATGTTGATCCCGTCATTAGCAAGCG,"Exon (Map7-201/Map7, exon 6 of 18)",10,20148471,20281522,133052,1,Map7-201,101916,Map7-201;Map7-202;Map7-206;Map7-208;Map7-209;Map7-204;Map7-203,Map7;Map7;Map7;Map7;Map7;Map7;Map7,0;0;0;79365;78681;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,17761,ENSMUSG00000019996,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22590,cg09260635,-0.00000153,0.00000133,-1.153611288,0.249548211,loss,ns,0.00000536,0.00000226,2.378405628,0.017993315,pos,ns,-0.000342857,0.000660813,-0.518841727,0.604241291,neg,ns,0.2187896,0.0000225,0.0000227,0.989346431,0.323265247,pos,ns,0.985208786,Wwox,Wwox_Intron,8,115303398,115303447,115303446,115303447,50,+,TCGAAAGGGCCGCTCTGACAGCTGCATAATTAAATACTGGAGTGTCAGCG,"Intron (Wwox-201/Wwox, intron 8 of 8)",8,114439655,115352708,913054,1,Wwox-201,863743,Wwox-201;Wwox-209,Wwox;Wwox,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,32,32,80707,ENSMUSG00000004637,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6837,cg08933907,0.0000241,0.0000107,2.241214358,0.025719749,gain,ns,-0.0000434,0.0000182,-2.378323603,0.017997245,neg,ns,0.012812863,0.005342897,2.398111381,0.017070844,pos,ns,1.767745003,-0.00069942,0.000183742,-3.806535344,0.000169829,neg,ns,0.166050791,Nr5a1,Nr5a1_Promoter,2,38718789,38718838,38718837,38718838,50,+,GCTGTTTCCGCTGCACCCCTTATCAGCCTGCTGCCAGATGTTCAGATCCG,Promoter (4-5kb),2,38692660,38714542,21883,2,Nr5a1-201,-4247,Nr5a1-201;Nr6a1-202;Nr6a1-210;Nr6a1-201,Nr5a1;Nr6a1;Nr6a1;Nr6a1,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,3,7,26423,ENSMUSG00000026751,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
16981,cg14884384,-0.0000399,0.00000981,-4.0689269,0.00006,loss,ns,0.0000396,0.0000167,2.377156813,0.018053226,pos,ns,0.020999882,0.004882101,4.301402319,0.0000228,pos,ns,4.642591388,-0.000822198,0.000167895,-4.897097366,0.00000157,neg,yes,0.502469117,Zfp423,Zfp423_Intron,8,87745269,87745318,87745317,87745318,50,+,CAGCTGAGTTCCATAGATGCATTATTAACGGCACATTCCTCGCCATAACG,"Intron (Zfp423-203/Zfp423, intron 3 of 5)",8,87661810,87804439,142630,2,Zfp423-203,59121,Zfp423-203;Zfp423-202;Zfp423-201,Zfp423;Zfp423;Zfp423,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,42,53,94187,ENSMUSG00000045333,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11191,cg10107891,-0.00000198,0.00000313,-0.633559572,0.526835442,loss,ns,0.0000126,0.00000532,2.3771242,0.018054793,pos,ns,0.004377103,0.001557359,2.810593805,0.005259661,pos,ns,2.279042234,-0.000129196,0.0000536,-2.4122953,0.016432922,neg,ns,0.943693143,Gm13527,Gm13527_Intergenic_upstream,2,56916505,56916554,56916505,56916506,50,+,CGCATTAATCTCTCATGTGTATGTGATCATTTTTATAAGACCTTTTACTG,Distal Intergenic,2,57079748,57080438,691,1,Gm13527-201,-163194,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,13,13,227920,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7978,cg27129843,0.000023,0.00000305,7.524413082,5.79E-13,gain,yes,-0.0000123,0.00000519,-2.376727825,0.018073847,neg,ns,0.006386195,0.001520145,4.201044159,0.0000348,pos,ns,4.458725555,-0.000183079,0.0000523,-3.502046489,0.000529551,neg,ns,0.092842464,Pax2,Pax2_Intergenic_upstream,19,44672175,44672224,44672175,44672176,50,+,CGCGGGGAAGGAATTGCGCAAAATAAAGAAGCATGTTCCAACAAGTCCTG,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-83821,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,19,44671992,44672192,201,*,201,20,0.666666667,0.897321429,0.099502488,1.62E-15,CpGisland,TRUE,U13,Hc-P
27717,cg01662148,-0.00000487,0.000005,-0.974299377,0.330667553,loss,ns,0.0000202,0.0000085,2.376581656,0.018080878,pos,ns,0.00559652,0.002489885,2.247701903,0.025297988,pos,ns,1.596914024,-0.000144158,0.0000856,-1.683554017,0.093274558,neg,ns,0.908959319,Smyd3,Smyd3_Intron,1,179004003,179004052,179004003,179004004,50,-,CGTGAAAAATTTAATTGCACTTTAATTACCAGTTAAGCTGAATAGCATGA,"Intron (Smyd3-204/Smyd3, intron 10 of 11)",1,178951960,179518034,566075,2,Smyd3-204,513982,Smyd3-204;Smyd3-201;Smyd3-206,Smyd3;Smyd3;Smyd3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,69726,ENSMUSG00000055067,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1938,cg23838245,-0.00000235,0.00000424,-0.553214951,0.580514966,loss,ns,0.0000171,0.00000721,2.376331726,0.018092906,pos,ns,0.003522002,0.002111485,1.668021121,0.096321265,pos,ns,1.016277824,-0.0000326,0.0000726,-0.448589788,0.654040996,neg,ns,0.099647685,Hgf,Hgf_fiveUTR,5,16553775,16553824,16553775,16553776,50,-,CGTAAGAGGGAGTTCAGACCTAGATCTTTCCAGTTAATCACACAACAAAC,Promoter (<=1kb),5,16553786,16619306,65521,1,Hgf-201,0,Hgf-202;Hgf-204;Hgf-206;Hgf-205;Hgf-201;Hgf-203,Hgf;Hgf;Hgf;Hgf;Hgf;Hgf,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,8,15234,ENSMUSG00000028864,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
5645,cg00282490,-0.00000399,0.0000014,-2.845300462,0.004732368,loss,ns,0.00000567,0.00000239,2.376259347,0.01809639,pos,ns,0.00191992,0.000698802,2.74744342,0.00635771,pos,ns,2.196699256,-0.0000716,0.000024,-2.979552294,0.003114898,neg,ns,0.957894593,Mapkap1,Mapkap1_Intron,2,34462753,34462802,34462801,34462802,50,-,CAAATTAATCACATATTGTCAAGGCAAAGTTGCATCAAATTAACACATCG,"Intron (Mapkap1-210/Mapkap1, intron 4 of 4)",2,34406771,34497716,90946,1,Mapkap1-210,55982,Mapkap1-210;Mapkap1-204;Mapkap1-211;Mapkap1-202;Mapkap1-201;Mapkap1-209;Mapkap1-203;Mapkap1-207;Mapkap1-206,Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,59,227743,ENSMUSG00000038696,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21171,cg10922251,-0.0000179,0.00000794,-2.258525483,0.024607719,loss,ns,0.000032,0.0000135,2.376010162,0.018108391,pos,ns,0.00455265,0.003949775,1.152635351,0.24994812,pos,ns,0.602150126,-0.000168857,0.000135832,-1.243125453,0.214760976,neg,ns,0.853690213,Zfp644,Zfp644_Exon,5,106618315,106618364,106618363,106618364,50,-,TCCACCATGCCAGCTCCAGTCCGTGGAAGATTAGCGTTTACAATATGTCG,"Exon (Zfp644-204/Zfp644, exon 6 of 6)",5,106616739,106696830,80092,2,Zfp644-204,78466,Zfp644-204;Zfp644-201;Zfp644-205;Zfp644-203;Zfp644-202;Zfp644-208,Zfp644;Zfp644;Zfp644;Zfp644;Zfp644;Zfp644,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,10,52397,ENSMUSG00000049606,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23858,cg06484622,0.0000156,0.00000951,1.636422782,0.102765917,gain,ns,0.0000384,0.0000161,2.375864303,0.018115419,pos,ns,0.007944902,0.004731119,1.679285856,0.094103892,pos,ns,1.026392412,0.0000469,0.000162703,0.288155318,0.773420411,pos,ns,0.240450644,En1,En1_Exon,1,120607004,120607053,120607004,120607005,50,-,CGGCGGCAGACCCTGGCCCAGGAACTCAGCCTCAACGAGTCCCAGATCAA,"Exon (En1-201/En1, exon 2 of 2)",1,120602418,120607992,5575,1,En1-201,4586,En1-201,En1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,36,13798,ENSMUSG00000058665,conserved gene and region,1,120606865,120607019,155,*,155,16,0.606451613,1.127272727,0.103225807,9.51E-13,CpGisland,TRUE,NA,NRS
27166,cg21927949,0.00000881,0.00000741,1.188172723,0.235674853,gain,ns,0.0000299,0.0000126,2.375850747,0.018116072,pos,ns,0.000892332,0.003688787,0.241903903,0.80901457,pos,ns,0.092043657,0.00000937,0.000126857,0.073870301,0.94116123,pos,ns,0.832675312,Tnr,Tnr_Exon,1,159858334,159858383,159858382,159858383,50,+,TGGTGTCACCATCACGGAGCTGGAGCCAGGTCTCACCTACAACATCAGCG,"Exon (Tnr-202/Tnr, exon 5 of 23)",1,159523769,159931729,407961,1,Tnr-202,334565,Tnr-202;Tnr-201;Tnr-203,Tnr;Tnr;Tnr,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,13,21960,ENSMUSG00000015829,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12702,cg08733030,-0.000000795,0.00000109,-0.731107555,0.465265699,loss,ns,0.00000439,0.00000185,2.37580453,0.018118299,pos,ns,0.001224198,0.000540875,2.263365759,0.024304377,pos,ns,1.614315515,-0.0000441,0.0000186,-2.371513704,0.018326146,neg,ns,0.967024265,Ptprm,Ptprm_Intron,17,66842762,66842811,66842810,66842811,50,+,CTGGGCGTGCAGTGGATGCTCATTTTATTTACCTCTCATAGTTAAAAGCG,"Intron (Ptprm-201/Ptprm, intron 15 of 32)",17,66666947,67354073,687127,2,Ptprm-201,511262,Ptprm-201;Ptprm-202;Ptprm-203;Ptprm-207,Ptprm;Ptprm;Ptprm;Ptprm,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,5,19274,ENSMUSG00000033278,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1138,cg20283800,0.0000536,0.000013,4.120979774,0.0000485,gain,ns,-0.0000525,0.0000221,-2.375502353,0.018132868,neg,ns,0.017833733,0.006474423,2.754489922,0.00622566,pos,ns,2.205814587,0.000135125,0.000222655,0.606879007,0.544375418,pos,ns,0.74417564,Ptprg,Ptprg_Intron,14,11791302,11791351,11791350,11791351,50,-,CGTGCACTCTGTTTGTTCACATTGGGTAATGAATGACCTTTCTGTTTCCG,"Intron (Ptprg-201/Ptprg, intron 2 of 29)",14,11553532,12242041,688510,1,Ptprg-201,237770,Ptprg-201;Ptprg-204;Ptprg-205,Ptprg;Ptprg;Ptprg,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,23,19270,ENSMUSG00000021745,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17594,cg26726842,-3.68E-08,0.00000542,-0.006782081,0.994593086,loss,ns,0.0000219,0.00000921,2.37491535,0.0181612,pos,ns,-0.002446204,0.002698723,-0.906430057,0.365412268,neg,ns,0.437216876,0.000041,0.0000928,0.441546251,0.659125413,pos,ns,0.737355623,Gm12644,Gm12644_Intergenic_downstream,4,91164652,91164701,91164700,91164701,50,+,TCCTTTCCCCTGGAATTCATAATTTATTTACCTTGTCTGTCCTGTTCCCG,Distal Intergenic,4,91156682,91157287,606,1,Gm12644-201,7970,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,664848,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24628,cg20855321,0.0000793,0.0000326,2.432008531,0.015581291,gain,ns,-0.000131586,0.0000554,-2.37448191,0.018182144,neg,ns,0.044443571,0.016235215,2.737479717,0.006548752,pos,ns,2.18384144,-0.001923621,0.000558328,-3.445326412,0.000648988,neg,ns,0.464003552,Mbd6,Mbd6_Exon,10,127287115,127287164,127287115,127287116,50,-,CGCTGAGGAGGTAGCTCCGGGTTTGCTCCAAGGAAGACAGCTCTGTGCCA,"Exon (Mbd6-201/Mbd6, exon 4 of 13)",10,127281956,127288890,6935,2,Mbd6-201,1726,Ddit3-201;Ddit3-203;Ddit3-202;Ddit3-204;Mbd6-204;Mbd6-203;Mbd6-201;Mbd6-202;Mbd6-205;Mbd6-207;Mbd6-206,Ddit3;Ddit3;Ddit3;Ddit3;Mbd6;Mbd6;Mbd6;Mbd6;Mbd6;Mbd6;Mbd6,-3610;-3629;-3630;-3665;0;0;0;0;0;-2744;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,6,110962,ENSMUSG00000025409,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
14372,cg02534193,-0.000000149,0.00000766,-0.019417462,0.984520572,loss,ns,0.0000309,0.000013,2.374175976,0.01819694,pos,ns,0.0000968,0.003811107,0.025407407,0.97974635,pos,ns,0.008886346,0.00020804,0.000131064,1.587323223,0.113458876,pos,ns,0.718872896,Speg,Speg_threeUTR,1,75384879,75384928,75384927,75384928,50,-,TGACAGGCACCTCAGAGGAGCAAGTGAGCTGGTGGGGCAGCGGGCAGACG,3' UTR,1,75375297,75432320,57024,1,Speg-201,9582,Speg-201;Speg-214;Speg-205;Speg-215;Speg-208;Speg-213;Speg-207;Speg-210;Speg-209;Speg-211,Speg;Speg;Speg;Speg;Speg;Speg;Speg;Speg;Speg;Speg,0;0;0;0;0;0;0;0;-584;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,9,11790,ENSMUSG00000026207,conserved gene and region,1,75384919,75385180,262,*,262,21,0.675572519,0.714545455,0.080152672,2.82E-14,CpGisland,TRUE,U13,Hc-P
11798,cg17584269,-0.00000301,0.00000135,-2.230806312,0.026409153,loss,ns,0.00000544,0.00000229,2.373775074,0.018216346,pos,ns,0.00161703,0.000671693,2.407395341,0.016650878,pos,ns,1.778562866,-0.00005,0.0000231,-2.165464213,0.031114544,neg,ns,0.966340992,Mbnl1,Mbnl1_Exon,3,60622216,60622265,60622216,60622217,50,+,CGCTGCAACAGCCACAGCCAACCAGGTTTGCTAATTTACAGCTTTGTTTC,"Exon (Mbnl1-211/Mbnl1, exon 7 of 9)",3,60473079,60628200,155122,1,Mbnl1-211,149137,Mbnl1-216;Mbnl1-211;Mbnl1-201;Mbnl1-202;Mbnl1-203;Mbnl1-218;Mbnl1-219;Mbnl1-214;Mbnl1-207;Mbnl1-205;Mbnl1-212;Mbnl1-215;Mbnl1-223;Mbnl1-213,Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,19,36,56758,ENSMUSG00000027763,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13451,cg27479682,0.00000845,0.00000454,1.859888549,0.063848333,gain,ns,-0.0000183,0.00000771,-2.373398167,0.018234606,neg,ns,-0.00517251,0.002260126,-2.288594327,0.022775458,neg,ns,1.642532885,0.000167278,0.0000777,2.152158916,0.032156645,pos,ns,0.872540148,Mink1,Mink1_threeUTR,11,70606664,70606713,70606664,70606665,50,+,CGACAGCTCGAGATCCTTCAGCAACAGCTGCTCCAGGAACAGGCCCTGCT,Promoter (<=1kb),11,70606701,70607773,1073,1,Mink1-212,0,Mink1-201;Mink1-202;Mink1-205;Mink1-203;Mink1-204;Mink1-207;Mink1-208;Mink1-213;Mink1-210;Mink1-212;Mink1-211;Mink1-209;Mink1-206,Mink1;Mink1;Mink1;Mink1;Mink1;Mink1;Mink1;Mink1;Mink1;Mink1;Mink1;Mink1;Mink1,0;0;0;0;0;7676;0;0;0;0;0;-3025;-3338,TRUE,FALSE,TRUE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,7,50932,ENSMUSG00000020827,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19415,cg13228949,0.000000491,0.00000229,0.21424865,0.830494017,gain,ns,-0.00000923,0.00000389,-2.373176089,0.018245373,neg,ns,-0.001069978,0.001139897,-0.938661581,0.348635286,neg,ns,0.45762866,0.0000431,0.0000392,1.10043174,0.271997816,pos,ns,0.942894944,Gm12689,Gm12689_Intergenic_upstream,4,99267968,99268017,99267968,99267969,50,-,CGTATAATGAAGCTGCTATAAAATCTCTGGTAATTAAGGGGGATTTGACA,Distal Intergenic,4,99295900,99297258,1359,1,Gm12689-201,-27932,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,26,100137011,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15623,cg25302398,0.00000322,0.0000094,0.34243498,0.732255625,gain,ns,-0.0000379,0.000016,-2.372860954,0.018260661,neg,ns,-0.018475448,0.004678086,-3.94936027,0.000097,neg,ns,4.013021576,0.000432098,0.000160879,2.685856962,0.007624136,pos,ns,0.643163813,Nfib,Nfib_Intron,4,82304740,82304789,82304788,82304789,50,+,GAGACGTGACCACAGCTACAGAAAAAACAAACAGCCTTCTTCACGCTTCG,"Intron (Nfib-201/Nfib, intron 11 of 11)",4,82290173,82505308,215136,2,Nfib-201,200519,Nfib-201;Nfib-203;Nfib-202;Nfib-205;Nfib-206;Nfib-204,Nfib;Nfib;Nfib;Nfib;Nfib;Nfib,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,66,18028,ENSMUSG00000008575,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27143,cg01678137,-0.00000467,0.00000565,-0.827656971,0.408501473,loss,ns,0.0000228,0.00000959,2.372791467,0.018264033,pos,ns,0.002907134,0.002810017,1.03456099,0.301680354,pos,ns,0.52045297,-0.0000755,0.0000966,-0.781357456,0.435188595,neg,ns,0.897272033,Gm14219,Gm14219_Intergenic_downstream,2,159299636,159299685,159299636,159299637,50,+,CGGATCGCATGGCTCATTTATCTTGCAGCCATTAATTAATGGTGGTTAAT,Distal Intergenic,2,159456170,159456457,288,2,Gm14219-201,156772,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,5,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18537,cg07043724,0.00000247,0.0000123,0.200330216,0.841353691,gain,ns,0.0000497,0.000021,2.372528391,0.018276806,pos,ns,0.0000186,0.006142047,0.003025388,0.997588039,pos,ns,0.001048767,0.000311319,0.000211224,1.473877063,0.141529414,pos,ns,0.155153018,Hoxb8,Hoxb8_fiveUTR,11,96281970,96282019,96282018,96282019,50,-,ATAACTTGTATTAAAATACCAATTACATTTATAGGACCTTTTAAAACTCG,Promoter (<=1kb),11,96281905,96285315,3411,1,Hoxb8-201,65,Hoxb7-201;Hoxb8-201;Hoxb8-202;Hoxb8-203,Hoxb7;Hoxb8;Hoxb8;Hoxb8,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,11,26,15416,ENSMUSG00000056648,mapped to different genes,11,96282018,96282200,183,*,183,12,0.486338798,1.109090909,0.065573771,0.000000226,CpGisland,TRUE,U13,Hc-P
13334,cg20446176,0.000175592,0.0000226,7.759075937,1.25E-13,gain,yes,-0.0000912,0.0000384,-2.372465962,0.018279838,neg,ns,0.013257297,0.01126346,1.177018131,0.240091194,pos,ns,0.619623769,-0.000846284,0.000387349,-2.184807369,0.029651547,neg,ns,0.30382304,0610010K14Rik,0610010K14Rik_Intergenic_downstream,11,70233100,70233149,70233148,70233149,50,-,GGCATTGCAGCTGCCTCTCCCGCCGAGTTGGAGACGGATGGGCTGGGACG,Distal Intergenic,11,70235206,70236196,991,2,0610010K14Rik-211,3096,0610010K14Rik-211;0610010K14Rik-210;0610010K14Rik-205;0610010K14Rik-209;0610010K14Rik-202;0610010K14Rik-204;0610010K14Rik-208;0610010K14Rik-207;0610010K14Rik-203;0610010K14Rik-213;0610010K14Rik-212;0610010K14Rik-206;0610010K14Rik-201;0610010K14Rik-214;Bcl6b-201;Bcl6b-203;Bcl6b-202;Gm21988-201;Gm21988-202;Rnasek-202;Rnasek-201;Rnasek-203,0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;Bcl6b;Bcl6b;Bcl6b;Gm21988;Gm21988;Rnasek;Rnasek;Rnasek,3047;0;0;0;0;0;0;0;0;0;0;0;0;0;-3361;-3423;-3302;0;0;6631;6693;5909,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,9,104457,ENSMUSG00000020831,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11487,cg18362416,0.00000075,0.00000109,0.686249362,0.493068819,gain,ns,0.00000441,0.00000186,2.372321776,0.018286843,pos,ns,0.001745099,0.000544107,3.207274306,0.001479993,pos,ns,2.829740465,-0.000043,0.0000187,-2.298564394,0.022194799,neg,ns,0.970998234,Fam126b,Fam126b_threeUTR,1,58534468,58534517,58534516,58534517,50,+,CCTCATCTCTGTCCTACCCTCTGTTGTGGCTGTTGCTGAGTTGGGCTCCG,3' UTR,1,58522806,58586323,63518,2,Fam126b-207,51806,Fam126b-207;Fam126b-202;Fam126b-208;Fam126b-201,Fam126b;Fam126b;Fam126b;Fam126b,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,3,213056,ENSMUSG00000038174,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19098,cg19556068,-0.000033,0.0000145,-2.278229,0.023393155,loss,ns,0.0000584,0.0000246,2.37228982,0.018288396,pos,ns,-0.008272158,0.007211884,-1.147017592,0.252258848,neg,ns,0.598153592,0.000601625,0.000248016,2.425749184,0.015847373,pos,ns,0.253126235,Ppp1r1b,Ppp1r1b_Promoter,11,98346450,98346499,98346450,98346451,50,-,CGCGTAGGATCCAGGAGAGAAAAATCAAAGTAATAAAACCTCATTTAATT,Promoter (1-2kb),11,98348404,98357796,9393,1,Ppp1r1b-201,-1954,Ppp1r1b-201;Ppp1r1b-204;Ppp1r1b-206;Ppp1r1b-202;Ppp1r1b-205;Ppp1r1b-203,Ppp1r1b;Ppp1r1b;Ppp1r1b;Ppp1r1b;Ppp1r1b;Ppp1r1b,-1905;-3497;-3497;-4356;-4716;-4990,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,16,16,19049,ENSMUSG00000061718,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
18632,cg21209021,0.000261815,0.0000234,11.2062919,1.07E-24,gain,yes,-0.0000941,0.0000397,-2.371898089,0.018307441,neg,ns,0.031563707,0.011628104,2.714432816,0.007010673,pos,ns,2.154240259,-0.001238623,0.00039989,-3.097412111,0.002130795,neg,ns,0.362703852,Hoxb3,Hoxb3_Exon,11,96345903,96345952,96345903,96345904,50,+,CGCAGCCCATGCAGTCCACGGCCGGCTTCATGAACGCCTTACACTCCATG,"Exon (Hoxb3-202/Hoxb3, exon 4 of 4)",11,96323326,96347930,24605,1,Hoxb3-202,22577,Hoxb2-202;Hoxb3-202;Hoxb3-203;Hoxb3-204;Hoxb3-201,Hoxb2;Hoxb3;Hoxb3;Hoxb3;Hoxb3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,19,15410,ENSMUSG00000048763,mapped to different genes,11,96345867,96346273,407,*,407,34,0.683046683,0.753703704,0.083538084,2.13E-23,CpGisland,TRUE,U3,Pr-B
5569,cg23393094,-0.000000571,0.00000149,-0.383512803,0.701602459,loss,ns,0.00000599,0.00000253,2.371888028,0.01830793,pos,ns,0.002310457,0.000740382,3.120628235,0.001974515,pos,ns,2.704539629,-0.000073,0.0000255,-2.867328603,0.004423128,neg,ns,0.966514278,Pbx3,Pbx3_Intron,2,34275814,34275863,34275814,34275815,50,+,CGTTAGCCCTCATTACCCCGATCACTGCAAATACAGATGCAAGGCCAGTC,"Intron (Pbx3-202/Pbx3, intron 2 of 7)",2,34171457,34372038,200582,2,Pbx3-202,96175,Pbx3-202;Pbx3-201;Pbx3-210;Pbx3-206;Pbx3-207;Pbx3-209;Pbx3-204;Pbx3-205;Pbx3-203,Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,82,18516,ENSMUSG00000038718,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6224,cg16920857,0.0000056,0.00000379,1.475460812,0.141103631,gain,ns,-0.0000153,0.00000645,-2.371667024,0.018318683,neg,ns,-0.004489542,0.001888771,-2.376964198,0.018062482,neg,ns,1.743222561,0.00000173,0.000065,0.026595374,0.978799575,pos,ns,0.846305216,Lman2l,Lman2l_threeUTR,1,36428412,36428461,36428460,36428461,50,-,TAGCTGAGGGAGCCGTTGTTCACCATGGCTGAGATGTAGGGGAATACCCG,3' UTR,1,36419871,36439668,19798,2,Lman2l-207,11207,Lman2l-207;Lman2l-204;Lman2l-205;Lman2l-201;Lman2l-202;Lman2l-206;Lman2l-203,Lman2l;Lman2l;Lman2l;Lman2l;Lman2l;Lman2l;Lman2l,0;0;0;0;0;-46;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,3,214895,ENSMUSG00000001143,conserved gene and region,1,36428300,36428461,162,*,162,10,0.555555556,0.801583375,0.061728395,0.0000055,CpGisland,TRUE,U10,Tr-S
5594,cg02928412,0.0000169,0.00000479,3.525118066,0.000487132,gain,ns,-0.0000193,0.00000813,-2.371093628,0.018346606,neg,ns,-0.008457228,0.002382778,-3.549314159,0.000446081,neg,ns,3.350586428,0.0000479,0.0000819,0.584145962,0.559546939,pos,ns,0.876489585,Apc,Apc_Exon,18,34298561,34298610,34298609,34298610,50,-,CAGCTTTTACATGGCAATGACAAAGACTCTGTATTGTTGGGAAATTCCCG,"Exon (Apc-209/Apc, exon 8 of 14)",18,34220924,34313506,92583,1,Apc-209,77637,Apc-209;Apc-203;Apc-202;Apc-207;Apc-205;Apc-206,Apc;Apc;Apc;Apc;Apc;Apc,0;0;0;0;0;-2651,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,7,11789,ENSMUSG00000005871,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20648,cg27492830,-0.000000887,0.00000268,-0.330966493,0.740893393,loss,ns,-0.0000108,0.00000455,-2.3709701,0.018352627,neg,ns,-0.002781232,0.001333543,-2.085596055,0.037832788,neg,ns,1.422131659,0.0000322,0.0000459,0.701213782,0.483695643,pos,ns,0.935373271,Adamts6,Adamts6_threeUTR,13,104314312,104314361,104314360,104314361,50,+,CCACCAAAGTGATGGAAACACCATTCCAGAAAATGGGATTGCCCACCACG,3' UTR,13,104287835,104496695,208861,1,Adamts6-207,26477,Adamts6-207;Adamts6-202;Adamts6-201;Adamts6-206;Adamts6-203;Adamts6-204;Adamts6-205,Adamts6;Adamts6;Adamts6;Adamts6;Adamts6;Adamts6;Adamts6,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,19,31,108154,ENSMUSG00000046169,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13441,cg08423489,0.000012,0.00000318,3.760444427,0.00020272,gain,ns,-0.0000128,0.0000054,-2.37047299,0.018376873,neg,ns,-0.003189958,0.001582336,-2.015980471,0.0446644,neg,ns,1.350038494,-0.0000236,0.0000544,-0.433067811,0.665266665,neg,ns,0.924460118,Sltm,Sltm_threeUTR,9,70573800,70573849,70573800,70573801,50,+,CGTGAAGGGTGACCCTGTCGAGAAGGAAGCCAGAGAAAGTTCTAAGAAAG,3' UTR,9,70542754,70592234,49481,1,Sltm-206,31046,Sltm-206;Sltm-203;Sltm-201;Sltm-208;Sltm-204,Sltm;Sltm;Sltm;Sltm;Sltm,0;0;0;0;-1559,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,11,66660,ENSMUSG00000032212,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5177,cg06868273,0.0000281,0.00000365,7.692675091,1.93E-13,gain,yes,-0.0000147,0.00000621,-2.370060931,0.018396991,neg,ns,0.003082907,0.001818314,1.695475882,0.090989241,pos,ns,1.041009957,-0.0000604,0.0000625,-0.965897703,0.334848277,neg,ns,0.071391455,Prrxl1,Prrxl1_Promoter,14,32599322,32599371,32599322,32599323,50,-,CGCTGGAAATAATCAGATTAAGGCCAATTATGCGTGAGATTATAAAGGCG,Promoter (<=1kb),14,32599407,32649204,49798,1,Prrxl1-203,-85,Prrxl1-203;Prrxl1-204;Prrxl1-202;Prrxl1-201;Prrxl1-205,Prrxl1;Prrxl1;Prrxl1;Prrxl1;Prrxl1,0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,14,23,107751,ENSMUSG00000041730,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
3746,cg23838418,-0.00000198,0.0000015,-1.314940207,0.189501875,loss,ns,0.00000606,0.00000256,2.369684505,0.018415388,pos,ns,0.002279409,0.000748643,3.044721788,0.002528663,pos,ns,2.597109121,-0.000061,0.0000257,-2.36887885,0.018454814,neg,ns,0.961224579,AW554918,AW554918_Intron,18,25241104,25241153,25241104,25241105,50,-,CGCCATCAGGGCTGGAAAACATGCTGAACTGTTCATATTTTCATATAATT,"Intron (AW554918-204/AW554918, intron 4 of 8)",18,25168999,25463725,294727,1,AW554918-204,72105,AW554918-204;AW554918-201;AW554918-207;AW554918-202;AW554918-208;AW554918-205;AW554918-203,AW554918;AW554918;AW554918;AW554918;AW554918;AW554918;AW554918,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,3,225289,ENSMUSG00000033632,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1281,cg25659357,-0.0000024,0.000000797,-3.016396193,0.002769748,loss,ns,-0.00000321,0.00000135,-2.369517976,0.018423531,neg,ns,-0.0000587,0.000396576,-0.148131595,0.88233522,neg,ns,0.054366385,0.00000459,0.0000136,0.336657454,0.736602927,pos,ns,0.974942923,Zfr,Zfr_Exon,15,12170829,12170878,12170877,12170878,50,+,TATGGTGAAAGACCCACCGGACGTCTTGGACAGGCAAAAATGCCTTGACG,"Exon (Zfr-201/Zfr, exon 16 of 20)",15,12117831,12185683,67853,1,Zfr-201,52998,Zfr-201;Zfr-207;Zfr-208;Zfr-209;Zfr-206,Zfr;Zfr;Zfr;Zfr;Zfr,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,12,22763,ENSMUSG00000022201,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27192,cg12242396,0.0000927,0.0000113,8.182435182,7.27E-15,gain,yes,-0.0000456,0.0000193,-2.369006402,0.018448567,neg,ns,0.011659579,0.005640704,2.067043321,0.039559915,pos,ns,1.402744647,-0.000463269,0.000193983,-2.388191208,0.017529884,neg,ns,0.044924819,Mafb,Mafb_Exon,2,160365949,160365998,160365949,160365950,50,+,CGCTTCTGCTTCAGGCGGATCACCTCGTCCTTGGTGAAGCCCCGCAGGTG,"Exon (Mafb-201/Mafb, exon 1 of 1)",2,160363703,160367065,3363,2,Mafb-201,1067,Mafb-201,Mafb,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,14,22,16658,ENSMUSG00000074622,conserved gene and region,2,160365864,160367635,1772,*,1772,185,0.687358917,0.886994873,0.104401806,2.50E-143,CpGisland,TRUE,U3,Pr-B
22496,cg00954002,-0.00000138,0.00000109,-1.263627663,0.207313131,loss,ns,0.0000044,0.00000186,2.368958848,0.018450896,pos,ns,0.001489584,0.000543721,2.739612678,0.006507424,pos,ns,2.186590879,-0.0000509,0.0000187,-2.722691797,0.006841865,neg,ns,0.969379147,Wwox,Wwox_Intron,8,114859020,114859069,114859068,114859069,50,-,GTTTTTAATGGATTCGCTTGATATACCTTCCAAATGGAGTACTTTGTGCG,"Intron (Wwox-201/Wwox, intron 8 of 8)",8,114439655,115352708,913054,1,Wwox-201,419365,Wwox-201;Wwox-203;Wwox-204;Wwox-209,Wwox;Wwox;Wwox;Wwox,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,32,32,80707,ENSMUSG00000004637,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13645,cg14999831,-0.000027,0.0000075,-3.595740289,0.00037624,loss,ns,0.0000302,0.0000127,2.368951478,0.018451257,pos,ns,-0.005007787,0.003733412,-1.341343324,0.180790853,neg,ns,0.742823547,0.000272613,0.000128392,2.123288197,0.034521654,pos,ns,0.849214232,Gm7675,Gm7675_Intergenic_upstream,7,71623114,71623163,71623162,71623163,50,+,TCCAAAGTGACATACATTTTTTATAGCTTCATAAAGTTGTCTCCTGACCG,Distal Intergenic,7,71696714,71697399,686,1,Gm7675-201,-73551,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,4,665535,NA,mapped to different genes,7,71623070,71623279,210,*,210,11,0.5,0.860655738,0.052380952,0.00000731,CpGisland,TRUE,U15,NS
8880,cg27034043,0.0000319,0.00000268,11.9034275,3.68E-27,gain,yes,-0.0000108,0.00000455,-2.368455762,0.018475549,neg,ns,0.001453117,0.001334045,1.089256122,0.276886985,pos,ns,0.557697458,-0.0000245,0.0000459,-0.533635082,0.593976439,neg,ns,0.94317945,Sik3,Sik3_Exon,9,46207983,46208032,46207983,46207984,50,-,CGGTTCTCAGATGGGGCTGCGAGCATCCAGGCCTTCAAAGCTCACCTGGA,"Exon (Sik3-204/Sik3, exon 16 of 25)",9,46012820,46224194,211375,1,Sik3-204,195163,Sik3-204;Sik3-202;Sik3-201;Sik3-206,Sik3;Sik3;Sik3;Sik3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,5,70661,ENSMUSG00000034135,conserved gene but different region,9,46207960,46207995,36,*,36,6,0.694444444,1.402597403,0.166666667,0.00000387,CpGisland,TRUE,NA,NRS
27656,cg07257404,-0.00000618,0.0000026,-2.37600286,0.018108743,loss,ns,0.0000105,0.00000442,2.368395441,0.018478507,pos,ns,0.003248499,0.001294745,2.50898697,0.012617775,pos,ns,1.899017227,-0.00012564,0.0000445,-2.821714149,0.005085174,neg,ns,0.933965725,Pld5,Pld5_threeUTR,1,175993989,175994038,175994037,175994038,50,+,TCCTTTGTAAATCTAGGACCAGGCAGCTGCAGTTGTAGAAGATGACACCG,3' UTR,1,175962306,176275298,312993,2,Pld5-201,281260,Pld5-201;Pld5-204;Pld5-203;Pld5-205,Pld5;Pld5;Pld5;Pld5,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,2,319455,ENSMUSG00000055214,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24161,cg14368732,0.0000117,0.00000394,2.964031658,0.003271752,gain,ns,-0.0000159,0.0000067,-2.368271191,0.018484601,neg,ns,0.007951735,0.001961869,4.053141799,0.000064,pos,ns,4.19412452,-0.000385011,0.0000675,-5.706520731,2.69E-08,neg,yes,0.06397244,Trit1,Trit1_Intron,4,123051009,123051058,123051009,123051010,50,-,CGAGAACTTGTTGAAAGGTGCTTAGACAGGGCACAGAAGCCCAACAAAGG,"Intron (Trit1-201/Trit1, intron 8 of 10)",4,123016597,123054949,38353,1,Trit1-201,34412,Trit1-201;Trit1-203;Trit1-202,Trit1;Trit1;Trit1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,2,66966,ENSMUSG00000028653,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
14986,cg00266822,0.0000603,0.00000925,6.521626748,2.82E-10,gain,yes,-0.0000372,0.0000157,-2.368197558,0.018488213,neg,ns,-0.00073224,0.004603254,-0.15907014,0.873717196,neg,ns,0.058629117,-0.0000858,0.000158306,-0.542225134,0.588052975,neg,ns,0.664397566,Unc119,Unc119_Exon,11,78348087,78348136,78348135,78348136,50,-,GGTGGAGTTCACAGTGGGAGACAAGCCTGTCAACAACTTCCGCATGATCG,"Exon (Unc119-201/Unc119, exon 4 of 5)",11,78343482,78349164,5683,1,Unc119-201,4605,Unc119-201;Unc119-206;Unc119-203;Unc119-205;Unc119-202;Unc119-207;Unc119-204,Unc119;Unc119;Unc119;Unc119;Unc119;Unc119;Unc119,0;4589;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,Exon,2,2,22248,ENSMUSG00000002058,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U5,En-Sd
5206,cg17655541,-0.0000272,0.0000138,-1.965069475,0.050298882,loss,ns,0.0000557,0.0000235,2.36806296,0.018494818,pos,ns,-0.000713196,0.006893167,-0.103464159,0.917661494,neg,ns,0.037317491,-0.000218596,0.000237055,-0.922129245,0.357178267,neg,ns,0.691007525,Gm28624,Gm28624_Intergenic_downstream,1,32789832,32789881,32789880,32789881,50,+,TCATTTTCAAAGTTAATTTCCTGCTCCCAGATGGAGAACAAATCTAATCG,Distal Intergenic,1,33028160,33030290,2131,2,Gm28624-201,240409,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4280,cg05278531,-0.0000224,0.0000136,-1.64825503,0.100313427,loss,ns,-0.0000547,0.0000231,-2.367698065,0.018512733,neg,ns,0.00860458,0.006762357,1.272423126,0.204176382,pos,ns,0.689994496,-0.000745223,0.000232557,-3.204476899,0.001493979,neg,ns,0.546718545,Gm35781,Gm35781_Intergenic_upstream,19,28178099,28178148,28178147,28178148,50,-,CAAACCTCACTTCGGCAAGGACCCAACCAGTAAATATCACTGTGGGAACG,Distal Intergenic,19,28146096,28146303,208,2,Gm35781-201,-31845,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,102639477,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21098,cg25854701,0.000100165,0.00000718,13.94421349,1.22E-34,gain,yes,-0.0000289,0.0000122,-2.367454097,0.01852472,neg,ns,0.004174639,0.00357517,1.167675433,0.243835016,pos,ns,0.612903927,0.000134884,0.00012295,1.097063786,0.273464954,pos,ns,0.180720671,Barhl2,Barhl2_Promoter,5,106459610,106459659,106459610,106459611,50,-,CGTATTACTCCTGATTAAGTGCCGTGTCAACCTAATTAGCAGAGTAATTA,Promoter (1-2kb),5,106452523,106458166,5644,2,Barhl2-201,-1493,Barhl2-201,Barhl2,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,8,27,104382,ENSMUSG00000034384,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
19426,cg10595543,0.00000323,0.00000283,1.14153959,0.254526461,gain,ns,-0.0000114,0.0000048,-2.367199823,0.018537221,neg,ns,-0.004208327,0.001407239,-2.990485461,0.003008574,neg,ns,2.521639248,0.0000449,0.0000484,0.928201018,0.354025444,pos,ns,0.907050374,Gm12689,Gm12689_Promoter,4,99295071,99295120,99295071,99295072,50,+,CGACTCCCTAGTGCTATCGTCATGAGGCTAGTTAGAGGGGTCTTTAAGCA,Promoter (<=1kb),4,99295900,99297258,1359,1,Gm12689-201,-780,Gm12689-201,Gm12689,-780,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,7,26,100137011,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8598,cg16955855,-0.00000329,0.00000369,-0.891481547,0.373362295,loss,ns,0.0000148,0.00000626,2.366801968,0.018556795,pos,ns,0.005601075,0.00183501,3.052339808,0.002467199,pos,ns,2.607795829,-0.000151338,0.0000631,-2.398164759,0.017068403,neg,ns,0.935159421,Btrc,Btrc_Intron,19,45432667,45432716,45432715,45432716,50,-,AGCTTTTTGTTTTCTGAGATGGAAACACAAATTGGATGTGTGCCTGAGCG,"Intron (Btrc-204/Btrc, intron 1 of 2)",19,45363734,45507736,144003,1,Btrc-204,68933,Btrc-204;Btrc-201;Btrc-210;Btrc-206;Btrc-202;Btrc-203,Btrc;Btrc;Btrc;Btrc;Btrc;Btrc,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,63,98,12234,ENSMUSG00000025217,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12786,cg07091099,-0.00000559,0.00000166,-3.376079988,0.000828893,loss,ns,0.00000666,0.00000282,2.366764227,0.018558652,pos,ns,0.002378089,0.000824749,2.883410608,0.00420911,pos,ns,2.375809731,-0.0000903,0.0000284,-3.184119365,0.001599505,neg,ns,0.05705992,Jmjd1c,Jmjd1c_fiveUTR,10,67186109,67186158,67186109,67186110,50,-,CGCTGCAAGTGAGCTCAGAAATGCTTGGTTTGAGAGCCATTTGCCTGTGA,5' UTR,10,67096125,67191748,95624,1,Jmjd1c-209,89984,Jmjd1c-209;Jmjd1c-210;Jmjd1c-211;Jmjd1c-201;Jmjd1c-212;Jmjd1c-205;Jmjd1c-206;Jmjd1c-208,Jmjd1c;Jmjd1c;Jmjd1c;Jmjd1c;Jmjd1c;Jmjd1c;Jmjd1c;Jmjd1c,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,9,108829,ENSMUSG00000037876,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
10190,cg23322365,-0.000000587,0.00000205,-0.286288809,0.774848156,loss,ns,0.00000825,0.00000349,2.366536847,0.018569848,pos,ns,0.002591248,0.00102112,2.537652122,0.011649482,pos,ns,1.933693393,-0.0000692,0.0000351,-1.970418328,0.049680059,neg,ns,0.963219969,Gls,Gls_fiveUTR,1,52219539,52219588,52219587,52219588,50,+,GTTAATCTTAACATATCCATACACTCTTTCAACCTGGGATCAGACGTTCG,5' UTR,1,52163448,52233223,69776,2,Gls-204,13635,Gls-204;Gls-203;Gls-202;Gls-210;Gls-213;Gls-215;Gls-211,Gls;Gls;Gls;Gls;Gls;Gls;Gls,0;0;0;0;-3945;-3596;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,6,14660,ENSMUSG00000026103,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3313,cg27404998,-0.000000157,0.00000169,-0.092977821,0.925981241,loss,ns,0.00000681,0.00000288,2.36634102,0.018579495,pos,ns,0.002203498,0.000842649,2.614964577,0.009359896,pos,ns,2.028728965,-0.0000185,0.000029,-0.6392351,0.523142056,neg,ns,0.955895313,Kcnma1,Kcnma1_Exon,14,23526767,23526816,23526767,23526768,50,-,CGGTTTCCTATTAACTCTATGATTTCAGGGACGTAGCTGGCAAACATGGC,"Exon (Kcnma1-207/Kcnma1, exon 8 of 28)",14,23289431,23803304,513874,2,Kcnma1-207,276488,Kcnma1-207;Kcnma1-210;Kcnma1-205;Kcnma1-201;Kcnma1-208;Kcnma1-209;Kcnma1-212;Kcnma1-204;Kcnma1-202;Kcnma1-211;Kcnma1-229;Kcnma1-234;Kcnma1-223;Kcnma1-214;Kcnma1-216;Kcnma1-219;Kcnma1-220;Kcnma1-224;Kcnma1-233;Kcnma1-236;Kcnma1-237;Kcnma1-213;Kcnma1-228;Kcnma1-203;Kcnma1-206;Kcnma1-221;Kcnma1-225;Kcnma1-226;Kcnma1-230;Kcnma1-235;Kcnma1-217;Kcnma1-238;Kcnma1-231;Kcnma1-218;Kcnma1-222;Kcnma1-232,Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,16,41,16531,ENSMUSG00000063142,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11767,cg06973724,-0.00000525,0.00000309,-1.699795706,0.09017242,loss,ns,-0.0000124,0.00000525,-2.366240646,0.018584442,neg,ns,-0.004798085,0.001538619,-3.11843502,0.001988813,neg,ns,2.701406036,0.0000655,0.0000529,1.237558636,0.216816292,pos,ns,0.050958302,Mbnl1,Mbnl1_Exon,3,60528426,60528475,60528474,60528475,50,-,ATCTGTGATTGGTTATCTCTCTATCATGCATTGCTTCACAAGGGGAAACG,"Exon (Mbnl1-208/Mbnl1, exon 1 of 2)",3,60472830,60595764,122935,1,Mbnl1-222,55596,Mbnl1-222;Mbnl1-221;Mbnl1-216;Mbnl1-220;Mbnl1-211;Mbnl1-204;Mbnl1-201;Mbnl1-209;Mbnl1-202;Mbnl1-225;Mbnl1-217;Mbnl1-203;Mbnl1-218;Mbnl1-208;Mbnl1-219;Mbnl1-214;Mbnl1-207;Mbnl1-205;Mbnl1-212,Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,19,36,56758,ENSMUSG00000027763,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
18894,cg04840159,-0.0000252,0.0000112,-2.250907811,0.025091798,loss,ns,0.000045,0.000019,2.365900656,0.018601205,pos,ns,0.01069288,0.005576879,1.917359256,0.05611114,pos,ns,1.250950908,-0.000471584,0.000191788,-2.458876798,0.014483478,neg,ns,0.848426916,Dach1,Dach1_Intron,14,97857048,97857097,97857048,97857049,50,+,CGGAGTCAGCATTTTGCTATTTTGTGATAACATGTTAAAATTAATGGGAT,"Intron (Dach1-201/Dach1, intron 6 of 10)",14,97786853,98169543,382691,2,Dach1-201,312446,Dach1-201;Dach1-202;Dach1-203,Dach1;Dach1;Dach1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,76,13134,ENSMUSG00000055639,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22831,cg18075627,-0.00000153,0.00000399,-0.383903027,0.701313499,loss,ns,0.000016,0.00000678,2.365792959,0.018606518,pos,ns,-0.002014972,0.001985493,-1.014847026,0.31097016,neg,ns,0.507281283,-0.0000411,0.0000683,-0.602341044,0.54738747,neg,ns,0.885511234,Cit,Cit_threeUTR,5,115986523,115986572,115986571,115986572,50,+,TTTGTTTTTCTTTCTGCCCTTCCTCTTTGCACCAAGCTGGACAGAGGCCG,3' UTR,5,115845644,116006353,160710,1,Cit-212,140879,Cit-212;Cit-201;Cit-202;Cit-203;Cit-213;Cit-216;Cit-204;Cit-205;Cit-208,Cit;Cit;Cit;Cit;Cit;Cit;Cit;Cit;Cit,0;0;0;0;0;0;0;0;-602,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,9,12704,ENSMUSG00000029516,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25968,cg06857662,-0.00000331,0.00000188,-1.764518831,0.078629405,loss,ns,0.00000755,0.00000319,2.365644329,0.018613852,pos,ns,0.001212171,0.000934597,1.296998891,0.195596052,pos,ns,0.708639916,-0.0000404,0.0000321,-1.257112431,0.209659226,neg,ns,0.954548083,Pdlim5,Pdlim5_Intergenic_downstream,3,142238906,142238955,142238906,142238907,50,+,CGGTGCATTTTAATGTGCAATGACGTGATTGATAGAAACCAAACAGCAGC,Downstream (<1kb),3,142244461,142246549,2089,2,Pdlim5-207,7594,Pdlim5-201;Pdlim5-206;Pdlim5-208;Pdlim5-212;Pdlim5-211,Pdlim5;Pdlim5;Pdlim5;Pdlim5;Pdlim5,0;0;0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,2,6,56376,ENSMUSG00000028273,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1859,cg02363882,-0.00000375,0.00000164,-2.293268159,0.022501622,loss,ns,0.00000658,0.00000278,2.365303425,0.018630684,pos,ns,0.002859204,0.000814946,3.50845601,0.000517432,pos,ns,3.286146855,-0.000106265,0.000028,-3.791680714,0.000179834,neg,ns,0.957216196,Gli3,Gli3_Intron,13,15659507,15659556,15659555,15659556,50,-,CAATTGATTTTCTTTCCTCTTGTAATAAGATCTGGAGACATATGAAAGCG,"Intron (Gli3-202/Gli3, intron 7 of 11)",13,15463235,15715091,251857,1,Gli3-202,196272,Gli3-202;Gli3-203;Gli3-201,Gli3;Gli3;Gli3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,19,21,14634,ENSMUSG00000021318,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24446,cg15850379,-0.000000475,0.00000589,-0.080566138,0.935838984,loss,ns,-0.0000237,0.00001,-2.365257589,0.018632948,neg,ns,-0.004456847,0.002931967,-1.520087585,0.129508221,neg,ns,0.887702662,-0.000074,0.00010083,-0.733499704,0.463808047,neg,ns,0.829185284,Gm44431,Gm44431_Intergenic_upstream,6,126284624,126284673,126284624,126284625,50,+,CGAGACTTAGGGCGGGTCAAAACAATGATCACTCAAGTGTAAACTGTGCT,Distal Intergenic,6,126336867,126337279,413,1,Gm44431-201,-52194,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,108169198,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4081,cg19863209,-0.0000171,0.00000692,-2.47621214,0.013812077,loss,ns,-0.0000278,0.0000118,-2.365103005,0.018640586,neg,ns,-0.00970004,0.003445219,-2.815507285,0.005181905,neg,ns,2.285510523,0.000107596,0.000118481,0.908132557,0.364513617,pos,ns,0.539720501,Crebrf,Crebrf_fiveUTR,17,26739537,26739586,26739585,26739586,50,+,TTGTAGCCTAGTGTAAGCGGAATGGATCCGCCTTTCGGGGATGCCTTTCG,5' UTR,17,26715650,26776635,60986,1,Crebrf-201,23887,Crebrf-201;Crebrf-204;Crebrf-203;Crebrf-205;Crebrf-202,Crebrf;Crebrf;Crebrf;Crebrf;Crebrf,0;0;0;0;-3398,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,5,77128,ENSMUSG00000048249,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5304,cg21797141,-0.00000545,0.00000197,-2.762127024,0.006085348,loss,ns,0.00000793,0.00000335,2.364957738,0.018647766,pos,ns,0.002137477,0.000981922,2.176829607,0.030247573,pos,ns,1.519309464,-0.0000368,0.0000338,-1.089709367,0.276687533,neg,ns,0.947001747,Atxn7l1,Atxn7l1_Exon,12,33367032,33367081,33367032,33367033,50,-,CGTTCCAGCATCCGTTTTGCAGCCTTTCAGCAACCCCAGTGCTGTGTATC,"Exon (Atxn7l1-212/Atxn7l1, exon 11 of 13)",12,33147754,33373030,225277,1,Atxn7l1-212,219278,Atxn7l1-212;Atxn7l1-204;Atxn7l1-202;Atxn7l1-213;Atxn7l1-205;Atxn7l1-209,Atxn7l1;Atxn7l1;Atxn7l1;Atxn7l1;Atxn7l1;Atxn7l1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,24,380753,ENSMUSG00000020564,conserved gene but different region,12,33366892,33367045,154,*,154,10,0.616883117,0.78974359,0.064935065,0.00000352,CpGisland,TRUE,U10,Tr-S
7579,cg12201660,0.00000622,0.0000126,0.493789942,0.621804207,gain,ns,0.0000506,0.0000214,2.364945407,0.018648376,pos,ns,0.013445648,0.006273451,2.143261949,0.032870125,pos,ns,1.483198642,-0.000312153,0.000215743,-1.446872041,0.14894316,neg,ns,0.669054035,Trim29,Trim29_Exon,9,43311394,43311443,43311394,43311395,50,+,CGACTCCTGCATCGGCAACAAGCAGAAGGCGGTCAAGTCCTGCCTGGTGT,Promoter (<=1kb),9,43310848,43336115,25268,1,Trim29-201,546,Trim29-201,Trim29,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,72169,ENSMUSG00000032013,conserved gene and region,9,43311257,43311425,169,*,169,14,0.644970414,0.797169811,0.082840237,7.36E-10,CpGisland,TRUE,NA,NRS
18415,cg25553428,0.0000369,0.000012,3.090594993,0.002178804,gain,ns,-0.000048,0.0000203,-2.364675067,0.018661744,neg,ns,0.014370921,0.005949839,2.415346089,0.016298494,pos,ns,1.787852517,-0.000513325,0.000204614,-2.508744305,0.012626269,neg,ns,0.571295847,Chst2,Chst2_Exon,9,95404779,95404828,95404779,95404780,50,+,CGGCCATGGGCTGGTAGCAAAACTCCTCCACCTGTTTGATCTGCTGGAAG,"Exon (Chst2-201/Chst2, exon 2 of 2)",9,95399292,95406722,7431,2,Chst2-201,1894,Chst2-201,Chst2,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,54371,ENSMUSG00000033350,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
3632,cg21532697,-0.00000201,0.00000157,-1.28594001,0.19942368,loss,ns,0.00000629,0.00000266,2.364540893,0.018668382,pos,ns,0.002317082,0.00077898,2.974508279,0.003165101,pos,ns,2.499612417,-0.0000483,0.0000268,-1.801693171,0.072565179,neg,ns,0.963727804,Gm47909,Gm47909_Intergenic_downstream,14,24837832,24837881,24837880,24837881,50,-,GGCATTTTGCAGCTCCATTGACACATTAAATATAGGCGTTCACCACGACG,Distal Intergenic,14,25089939,25090406,468,2,Gm47909-201,252574,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,13,17,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12899,cg05500919,0.0000026,0.00000175,1.483308761,0.139008335,gain,ns,0.00000704,0.00000298,2.364352552,0.018677704,pos,ns,0.002767636,0.000871907,3.174232295,0.001653206,pos,ns,2.781672971,-0.0000672,0.00003,-2.242416374,0.025641146,neg,ns,0.958742093,Stx8,Stx8_Intron,11,68146145,68146194,68146193,68146194,50,-,TAGACTTAATTAAGAAACTTGCTGGCTTTGTCTGTAGGGGGCCCATTACG,"Intron (Stx8-201/Stx8, intron 7 of 7)",11,67966193,68207148,240956,1,Stx8-201,179952,Stx8-201;Stx8-204,Stx8;Stx8,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,55943,ENSMUSG00000020903,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18873,cg12366082,-0.0000376,0.0000126,-2.983506258,0.003076055,loss,ns,0.0000506,0.0000214,2.363583824,0.018715792,pos,ns,0.012519974,0.006268304,1.997346261,0.046661321,pos,ns,1.331042966,-0.000578006,0.000215566,-2.681334155,0.007725544,neg,ns,0.814762273,Dach1,Dach1_threeUTR,14,97786926,97786975,97786926,97786927,50,-,CGTGGTTCTCACATTGAAACCAGGCTCAAATAACTAGGCTACCATAGAAA,3' UTR,14,97786853,98169543,382691,2,Dach1-201,382568,Dach1-201;Dach1-202,Dach1;Dach1,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,76,13134,ENSMUSG00000055639,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23662,cg03912137,-0.00000218,0.00000212,-1.032144852,0.302808823,loss,ns,0.00000849,0.00000359,2.363505282,0.018719688,pos,ns,0.003912229,0.001052808,3.715994574,0.000240066,pos,ns,3.619668631,-0.000111266,0.0000362,-3.073146866,0.002306256,neg,ns,0.948299998,Foxj3,Foxj3_Exon,4,119619419,119619468,119619419,119619420,50,-,CGGAGCCTTTATAAGTCAGTTTTTGAGCAGTCACTTAGTCAACAAGGTGA,"Exon (Foxj3-201/Foxj3, exon 8 of 13)",4,119539661,119629119,89459,1,Foxj3-201,79758,Foxj3-201;Foxj3-202;Foxj3-204,Foxj3;Foxj3;Foxj3,0;0;-1874,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,230700,ENSMUSG00000032998,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27842,cg25430306,0.0000143,0.00000528,2.716052863,0.006977267,gain,ns,0.0000212,0.00000897,2.363365187,0.018726638,pos,ns,0.013797208,0.002629093,5.247895882,0.000000286,pos,ns,6.543810386,-0.000287305,0.0000904,-3.177653823,0.001634437,neg,ns,0.901199792,Esrrg,Esrrg_Intron,1,188199765,188199814,188199813,188199814,50,+,CTGCAGCATTCAAGGTATTGACAGTTTGTTTTCTGGGGCCATATGTGACG,"Intron (Esrrg-203/Esrrg, intron 7 of 7)",1,187609029,188214386,605358,1,Esrrg-203,590736,Esrrg-203;Esrrg-201;Esrrg-202,Esrrg;Esrrg;Esrrg,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,60,26381,ENSMUSG00000026610,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13463,cg19502257,-0.00000323,0.00000321,-1.004435358,0.315952185,loss,ns,-0.0000129,0.00000546,-2.363260565,0.01873183,neg,ns,0.00319692,0.001598145,2.0003938,0.04632966,pos,ns,1.334140884,-0.000212396,0.000055,-3.864543467,0.000135573,neg,ns,0.881237112,Xpo7,Xpo7_threeUTR,14,70664577,70664626,70664625,70664626,50,-,ACACTGTATGCAGCAAACACCCTTACAAGTCTATCCGCAACCTGATCACG,3' UTR,14,70654246,70766628,112383,2,Xpo7-202,102002,Xpo7-202;Xpo7-201;Xpo7-206;Xpo7-203,Xpo7;Xpo7;Xpo7;Xpo7,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,13,65246,ENSMUSG00000022100,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20700,cg18741172,-0.00000104,0.0000013,-0.797538004,0.425749099,loss,ns,0.00000522,0.00000221,2.362834207,0.018753,pos,ns,0.002215894,0.000647032,3.424706228,0.000698329,pos,ns,3.155939642,-0.0000408,0.0000223,-1.835609792,0.067373153,neg,ns,0.972546708,Pkd2,Pkd2_Exon,5,104489242,104489291,104489290,104489291,50,+,TTCATCAATTTTAACAGGACCATGAGCCAGCTCTCGACAACCATGTCTCG,"Exon (Pkd2-201/Pkd2, exon 8 of 15)",5,104459450,104505819,46370,1,Pkd2-201,29792,Pkd2-201;Pkd2-202;Pkd2-203,Pkd2;Pkd2;Pkd2,0;0;-3480,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,18764,ENSMUSG00000034462,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26662,cg04296410,-0.00000407,0.000002,-2.035957783,0.042604483,loss,ns,0.00000802,0.00000339,2.362830994,0.01875316,pos,ns,0.00311438,0.000994014,3.133134833,0.001894776,pos,ns,2.72244219,-0.0000992,0.0000342,-2.901840793,0.003975476,neg,ns,0.951026005,Rpsa-ps10,Rpsa-ps10_Intergenic_downstream,3,149705871,149705920,149705871,149705872,50,+,CGCAAATTGGCTCAGGAGGTAGTTACTTTAATAGCCAAAACAATGCAACA,Distal Intergenic,3,150072658,150073542,885,2,Rpsa-ps10-201,367622,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,2,100040633,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14908,cg19296063,-0.00000614,0.00000138,-4.460246524,0.0000115,loss,ns,-0.00000553,0.00000234,-2.362636024,0.018762848,neg,ns,-0.000279616,0.000685585,-0.407851206,0.683664447,neg,ns,0.165157005,0.00000852,0.0000236,0.361395797,0.718049772,pos,ns,0.991242036,Fam222b,Fam222b_fiveUTR,11,78153809,78153858,78153857,78153858,50,+,TGTGAAGGTTCCCCAGCGGAAACACGTTCGTCGTACTGTGAACGGCCTCG,5' UTR,11,78094660,78156700,62041,1,Fam222b-201,59149,Fam222b-201;Fam222b-202;Fam222b-203;Gm12571-201;Traf4-203,Fam222b;Fam222b;Fam222b;Gm12571;Traf4,0;0;0;-4371;11731,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,10,21,216971,ENSMUSG00000037750,conserved gene and region,11,78153825,78153900,76,*,76,9,0.631578947,1.266666667,0.118421053,8.12E-08,CpGisland,TRUE,U10,Tr-S
3873,cg25922445,-0.00000621,0.00000329,-1.885696398,0.060270722,loss,ns,0.0000132,0.00000559,2.362607714,0.018764255,pos,ns,0.003966693,0.001637934,2.421765887,0.016018785,pos,ns,1.795370424,-0.000100664,0.0000563,-1.787089821,0.074899892,neg,ns,0.928969918,Nsd3,Nsd3_Exon,8,25675094,25675143,25675094,25675095,50,-,CGCTCTCCTAATGTAGGATCAAGACACTGTTCATAAGACACTCAAGAAAG,"Exon (Nsd3-205/Nsd3, exon 1 of 2)",8,25601601,25677214,75614,1,Nsd3-211,73493,Nsd3-211;Nsd3-203;Nsd3-208;Nsd3-204;Nsd3-206;Nsd3-201;Nsd3-205,Nsd3;Nsd3;Nsd3;Nsd3;Nsd3;Nsd3;Nsd3,0;72810;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,Exon,8,14,234135,ENSMUSG00000054823,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21100,cg07610938,0.0000131,0.00000404,3.228408238,0.001378183,gain,ns,-0.0000162,0.00000687,-2.362593163,0.018764978,neg,ns,0.000647274,0.002011949,0.321714981,0.747885446,pos,ns,0.126164918,-0.0000657,0.0000692,-0.950078006,0.342812718,neg,ns,0.047323893,Barhl2,Barhl2_Promoter,5,106463659,106463708,106463659,106463660,50,+,CGGCTAATTAAAACGGCACTTTGAGTGCTAATCAATCGCCTTATTAAGTT,Promoter (5-6kb),5,106452523,106458166,5644,2,Barhl2-201,-5493,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,8,27,104382,ENSMUSG00000034384,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
25966,cg19382132,-0.000000448,0.00000318,-0.140926115,0.88801984,loss,ns,0.0000128,0.0000054,2.362569082,0.018766175,pos,ns,0.003778633,0.001582201,2.388213733,0.01752883,pos,ns,1.756247076,-0.00010681,0.0000544,-1.962989345,0.050541285,neg,ns,0.936063418,Gucy2f,Gucy2f_Exon,X,142161886,142161935,142161886,142161887,50,-,CGATAAAGTAAATTGAATTGTAGATGGTTCCAAACAACGGTGAAACCTAT,"Exon (Gucy2f-201/Gucy2f, exon 4 of 20)",20,142081160,142196931,115772,2,Gucy2f-201,34996,Gucy2f-201,Gucy2f,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,2,245650,ENSMUSG00000042282,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10164,cg02916332,0.000209415,0.0000174,12.0367464,1.23E-27,gain,yes,-0.0000698,0.0000296,-2.362353929,0.018776873,neg,ns,0.025103511,0.00865916,2.899070183,0.004009826,pos,ns,2.396874507,-0.000987313,0.000297788,-3.315491008,0.001023416,neg,ns,0.349451905,Gm28308,Gm28308_Intron,6,52204715,52204764,52204715,52204716,50,-,CGGGGTCGAATTGAGGTTACAGCCCATTATGGCAAAATTATTGCATTTCC,"Intron (Hoxaas3-202/Hoxaas3-202, intron 1 of 2)",6,52163359,52213339,49981,2,Gm28308-201,8575,Gm28308-201;Hoxa3-201;Hoxa3-203;Hoxa5-201;Hoxa6-201,Gm28308;Hoxa3;Hoxa3;Hoxa5;Hoxa6,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,46,103,,NA,mapped to different genes,6,52204601,52204722,122,*,122,21,0.754098361,1.22,0.172131148,6.21E-22,CpGisland,TRUE,U3,Pr-B
3161,cg04621435,-0.00000136,0.00000248,-0.547711702,0.584284007,loss,ns,0.00000996,0.00000422,2.362222957,0.018783388,pos,ns,0.003570964,0.001235031,2.891395901,0.004106388,pos,ns,2.38654005,-0.0000815,0.0000425,-1.918857923,0.055920365,neg,ns,0.947390389,Lrmda,Lrmda_Intron,14,23040972,23041021,23041020,23041021,50,+,ATCTGTCTAACCTCATAATTCACTTTCACATTGGATTATGGATGTCTGCG,"Intron (Lrmda-201/Lrmda, intron 6 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,1021260,Lrmda-201;Lrmda-206,Lrmda;Lrmda,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6032,cg25960707,0.0000822,0.0000129,6.350679195,7.62E-10,gain,yes,-0.0000519,0.000022,-2.3621704,0.018786003,neg,ns,-0.012549418,0.006439975,-1.948674926,0.052236189,neg,ns,1.282028514,0.000550509,0.00022147,2.485701983,0.013456356,pos,ns,0.701750397,Cxxc5,Cxxc5_Intron,18,35875115,35875164,35875163,35875164,50,+,ATTTGCATCGTGTTCAATTAAAAACCTGACCAGCTCCCGCCTGCCTGGCG,"Intron (Gm50399-201/Gm50399-201, intron 1 of 1)",18,35854738,35858619,3882,1,Cxxc5-205,20377,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,49,67393,ENSMUSG00000046668,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U5,En-Sd
9676,cg08153819,0.0000396,0.00000711,5.564606833,5.69E-08,gain,yes,-0.0000285,0.0000121,-2.362169134,0.018786066,neg,ns,0.004496051,0.003540326,1.269954053,0.20505341,pos,ns,0.688133004,-0.000258191,0.000121752,-2.120639795,0.034745898,neg,ns,0.195621274,Slc6a5,Slc6a5_Exon,7,49914717,49914766,49914717,49914718,50,+,CGAGCAAGGGGATGAGAATAAGGCCCGAGGGAACTGGTCCAGCAAACTGG,"Exon (Slc6a5-201/Slc6a5, exon 3 of 16)",7,49910146,49963856,53711,1,Slc6a5-201,4571,Slc6a5-201;Slc6a5-204;Slc6a5-203;Slc6a5-202,Slc6a5;Slc6a5;Slc6a5;Slc6a5,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,5,104245,ENSMUSG00000039728,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
13926,cg00903815,0.0000167,0.00000503,3.328738669,0.00097757,gain,ns,-0.0000202,0.00000854,-2.36214701,0.018787167,neg,ns,-0.002740223,0.002503162,-1.094704759,0.274495818,neg,ns,0.561464268,-0.000251772,0.0000861,-2.924737443,0.003701724,neg,ns,0.852103734,Chd2,Chd2_Exon,7,73490569,73490618,73490617,73490618,50,-,TTGAAATCAATCAGAGTTTTATACAATAAAGAGTCATCATTCTTCAACCG,"Exon (Chd2-203/Chd2, exon 16 of 39)",7,73426638,73541746,115109,2,Chd2-203,51128,Chd2-203,Chd2,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,11,16,244059,ENSMUSG00000078671,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23497,cg04444302,-0.00000158,0.00000785,-0.201535483,0.840412065,loss,ns,0.0000315,0.0000133,2.361612272,0.018813791,pos,ns,0.005476051,0.003907493,1.401423174,0.162087917,pos,ns,0.790249358,0.0000486,0.000134378,0.361889038,0.717681504,pos,ns,0.17339643,Rbfox3,Rbfox3_Intron,11,118678735,118678784,118678735,118678736,50,-,CGAGCTAACCCTGGAGGAAACTTCAATAAACACGAGATTGGATTGGAAAC,"Intron (Rbfox3-205/Rbfox3, intron 2 of 13)",11,118489762,118909550,419789,2,Rbfox3-205,230766,Rbfox3-205;Rbfox3-203;Rbfox3-201;Rbfox3-202;Rbfox3-204;Rbfox3-206,Rbfox3;Rbfox3;Rbfox3;Rbfox3;Rbfox3;Rbfox3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,13,52897,ENSMUSG00000025576,conserved gene and region,11,118678640,118678813,174,*,174,11,0.522988506,0.976530612,0.063218391,0.00000122,CpGisland,TRUE,NA,NRS
11791,cg02750490,-0.000000408,0.00000162,-0.252477492,0.800839331,loss,ns,0.00000649,0.00000275,2.361562834,0.018816254,pos,ns,0.00275267,0.000805141,3.418867129,0.000712925,pos,ns,3.14695586,-0.000086,0.0000277,-3.10652642,0.00206813,neg,ns,0.962442394,Mbnl1,Mbnl1_Exon,3,60621397,60621446,60621445,60621446,50,-,TTCCTGTTGCAATGCATGATGGGCAGGCTCAATATTGTGCATGACACCCG,"Exon (Mbnl1-216/Mbnl1, exon 7 of 7)",3,60473074,60621458,148385,1,Mbnl1-216,148323,Mbnl1-216;Mbnl1-211;Mbnl1-201;Mbnl1-202;Mbnl1-203;Mbnl1-218;Mbnl1-219;Mbnl1-214;Mbnl1-207;Mbnl1-205;Mbnl1-212;Mbnl1-215;Mbnl1-223;Mbnl1-213,Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,19,36,56758,ENSMUSG00000027763,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8136,cg05630644,-0.000024,0.00000747,-3.206204647,0.001485326,loss,ns,0.00003,0.0000127,2.361332254,0.018827746,pos,ns,0.005970876,0.003718685,1.605641783,0.109370791,pos,ns,0.961098647,-0.000179567,0.000127885,-1.404123341,0.161283168,neg,ns,0.793113101,Pax2,Pax2_Intron,19,44783712,44783761,44783760,44783761,50,+,GAATTGATATACCTGCTCTCAGTGGCTTGTTCTGCTCCCAGGCTGCCCCG,"Intron (Pax2-203/Pax2, intron 3 of 9)",19,44756045,44837851,81807,1,Pax2-203,27667,Pax2-203;Pax2-201;Pax2-202,Pax2;Pax2;Pax2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,35,166,18504,ENSMUSG00000004231,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22435,cg08105306,0.00000899,0.0000143,0.630012012,0.529150814,gain,ns,0.0000572,0.0000242,2.361247711,0.018831961,pos,ns,0.022445345,0.007099733,3.161435278,0.001725188,pos,ns,2.76316353,-0.000862923,0.000244159,-3.534264666,0.000471215,neg,ns,0.288706494,Fam222a,Fam222a_Intergenic_upstream,5,114537642,114537691,114537690,114537691,50,+,CGGCTGTAATTACTTTGGGGACACAGTTAACCTCTCATTAGGAACGCACG,Distal Intergenic,5,114568016,114613220,45205,1,Fam222a-201,-30325,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,16,433940,ENSMUSG00000041930,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
20983,cg10790706,-0.00000399,0.00000183,-2.175589354,0.030341157,loss,ns,0.00000735,0.00000311,2.361181698,0.018835253,pos,ns,0.003036938,0.000912294,3.328901803,0.000977017,pos,ns,3.010097697,-0.00008,0.0000314,-2.551176812,0.011216067,neg,ns,0.957642329,Immp1l,Immp1l_Intron,2,105913665,105913714,105913713,105913714,50,+,TTTATGAGTGGAGCAACACATTAGCATTGGGTTCACAATAGATCATATCG,"Intron (Immp1l-201/Immp1l, intron 2 of 6)",2,105904638,105965558,60921,1,Immp1l-201,9027,Immp1l-201,Immp1l,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,7,66541,ENSMUSG00000042670,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26272,cg18486719,0.0000311,0.000013,2.39526233,0.017201582,gain,ns,0.000052,0.000022,2.361102535,0.018839201,pos,ns,0.026447596,0.006457771,4.095468506,0.0000538,pos,ns,4.269069414,-0.000680614,0.000222082,-3.064693639,0.002370439,neg,ns,0.596709789,Cfap61,Cfap61_Exon,2,146045466,146045515,146045466,146045467,50,-,CGTGCGACCACGACGACAGATTGTCTATCCTCTGGAAAAGCTTGGCATAA,"Exon (Cfap61-206/Cfap61, exon 17 of 27)",2,145934814,146215039,280226,1,Cfap61-206,110652,Cfap61-204;Cfap61-206;Cfap61-213;Cfap61-211;Cfap61-203;Cfap61-209,Cfap61;Cfap61;Cfap61;Cfap61;Cfap61;Cfap61,0;0;0;0;0;-1736,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,13,78774,ENSMUSG00000037143,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
536,cg13188467,0.000054,0.00000499,10.83884346,2.00E-23,gain,yes,-0.00002,0.00000847,-2.360837977,0.018852401,neg,ns,0.003529193,0.002481289,1.42232283,0.155937953,pos,ns,0.807048172,-0.0000454,0.0000853,-0.532260765,0.59492667,neg,ns,0.079928336,Dlx6,Dlx6_Promoter,6,6856418,6856467,6856418,6856419,50,+,CGGTTTTAATTACAGTGAGGGTTTCTCTACAAATCTGTACAAGACAGTGG,Promoter (6-7kb),6,6863334,6867970,4637,1,Dlx6-203,-6867,NA,NA,NA,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,9,36,13396,ENSMUSG00000029754,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
3824,cg25309503,0.0000122,0.00000934,1.309017217,0.19149801,gain,ns,0.0000375,0.0000159,2.36016935,0.018885799,pos,ns,0.007895571,0.004648959,1.698352395,0.090444669,pos,ns,1.043617027,-0.000220642,0.000159877,-1.380073564,0.168558444,neg,ns,0.687738369,5730522E02Rik,5730522E02Rik_Intergenic_downstream,11,25532304,25532353,25532304,25532305,50,-,CGGATGGGTGTTTACAAGAATTCCAATTTCAGGTCATAGCCATTTCTGAG,Distal Intergenic,11,25602816,25620098,17283,2,5730522E02Rik-205,87794,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,21,90,70626,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15478,cg05915758,-0.0000169,0.00000663,-2.549793272,0.011259734,loss,ns,-0.0000266,0.0000113,-2.360078427,0.018890344,neg,ns,-0.004750999,0.003298419,-1.440386717,0.150767193,neg,ns,0.821693151,0.0000344,0.000113432,0.303347063,0.761828862,pos,ns,0.813731747,Gm7503,Gm7503_Intergenic_upstream,18,81013318,81013367,81013318,81013319,50,+,CGGCACTGTTAGCATGCAAAAGTTGTTGCTCATATCTGTCATTGATCAAT,Distal Intergenic,18,80997003,80997383,381,2,Gm7503-201,-15935,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,17,21,665124,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16936,cg10276411,-0.00000656,0.0000223,-0.294182448,0.768815372,loss,ns,-0.0000894,0.0000379,-2.360043649,0.018892083,neg,ns,0.006356963,0.011099869,0.572706134,0.56725882,pos,ns,0.246218743,-0.000584092,0.000381724,-1.530143807,0.127000902,neg,ns,0.232741968,Ascl1,Ascl1_Intergenic_downstream,10,87489496,87489545,87489544,87489545,50,+,TAAGCTCTAAATTGGCCCACTGCTGGCAGAAAGTCCGATTATTTATGGCG,Downstream (1-2kb),10,87490819,87493660,2842,2,Ascl1-201,4115,Ascl1-201,Ascl1,4115,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,11,11,17172,ENSMUSG00000020052,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
2058,cg04823994,-0.00000268,0.00000335,-0.801682167,0.42335091,loss,ns,-0.0000134,0.00000569,-2.359714884,0.018908528,neg,ns,-0.005422949,0.001666739,-3.253628313,0.001265193,neg,ns,2.89784328,0.000107888,0.0000573,1.882235846,0.060740525,pos,ns,0.942152844,Cdk13,Cdk13_Exon,13,17764989,17765038,17765037,17765038,50,+,TAAGTACCTTCTCCAATAATTCCGATGATATCAAATTTATCCACGCAGCG,"Exon (Cdk13-207/Cdk13, exon 4 of 14)",13,17710315,17805097,94783,2,Cdk13-207,40059,Cdk13-207;Cdk13-201;Cdk13-205;Cdk13-206,Cdk13;Cdk13;Cdk13;Cdk13,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,6,69562,ENSMUSG00000041297,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16496,cg08106287,-0.0000478,0.0000111,-4.318264835,0.0000212,loss,ns,0.0000443,0.0000188,2.359711388,0.018908703,pos,ns,-0.007990103,0.005504099,-1.451664142,0.147606267,neg,ns,0.830895204,0.000160982,0.000189285,0.850472734,0.395718711,pos,ns,0.549180172,Gm9264,Gm9264_Intergenic_upstream,14,85215240,85215289,85215288,85215289,50,-,TGTGTTCCCCTTCTCCTGCCCACTTGATTGGTTTTAAATTGCAACTGTCG,Distal Intergenic,14,85479026,85479533,508,1,Gm9264-201,-263786,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,2,668603,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24942,cg02791820,0.0000691,0.0000132,5.253581093,0.000000278,gain,yes,-0.0000527,0.0000223,-2.359656706,0.01891144,neg,ns,0.012775307,0.006546479,1.951477641,0.051900623,pos,ns,1.284827431,-0.000488069,0.000225133,-2.167917613,0.030925602,neg,ns,0.462554491,Adgrb2,Adgrb2_Intron,4,130028352,130028401,130028400,130028401,50,-,GTCAACCAAGAAAGTCAATATTTAATTTGGGCACCATGTTAATGCCATCG,"Intron (Gm12963-201/Gm12963-201, intron 2 of 6)",4,130021115,130022430,1316,1,Adgrb2-210,7286,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,8,230775,ENSMUSG00000028782,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10165,cg22877475,0.000195906,0.0000179,10.95515523,7.95E-24,gain,yes,-0.0000717,0.0000304,-2.359420872,0.018923246,neg,ns,0.024780063,0.008900306,2.784180904,0.005696086,pos,ns,2.244423451,-0.000998581,0.000306081,-3.262475353,0.001227637,neg,ns,0.219930417,Gm28308,Gm28308_Intron,6,52204721,52204770,52204721,52204722,50,+,CGAATTGAGGTTACAGCCCATTATGGCAAAATTATTGCATTTCCCTCGCA,"Intron (Hoxaas3-202/Hoxaas3-202, intron 1 of 2)",6,52163359,52213339,49981,2,Gm28308-201,8569,Gm28308-201;Hoxa3-201;Hoxa3-203;Hoxa5-201;Hoxa6-201,Gm28308;Hoxa3;Hoxa3;Hoxa5;Hoxa6,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,46,103,,NA,mapped to different genes,6,52204601,52204722,122,*,122,21,0.754098361,1.22,0.172131148,6.21E-22,CpGisland,TRUE,U3,Pr-B
12179,cg10815883,-0.00000853,0.00000534,-1.59828346,0.110998634,loss,ns,0.0000214,0.00000907,2.359409944,0.018923793,pos,ns,0.008300533,0.002657777,3.123111641,0.001958439,pos,ns,2.708089956,-0.000231523,0.0000914,-2.533054858,0.011800171,neg,ns,0.913089466,Map2k5,Map2k5_Intron,9,63230130,63230179,63230130,63230131,50,+,CGGTTGTATAAACATCAGATCAAGTCTGATGTCTTCAAGGATTTCAGAGT,"Intron (Map2k5-201/Map2k5, intron 17 of 21)",9,63163768,63377902,214135,2,Map2k5-201,147723,Map2k5-201;Map2k5-202,Map2k5;Map2k5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,34,37,23938,ENSMUSG00000058444,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1232,cg13621323,-0.0000369,0.0000139,-2.654345273,0.008356329,loss,ns,0.0000558,0.0000236,2.359163573,0.018936134,pos,ns,0.011047738,0.006926722,1.594944692,0.111743563,pos,ns,0.951777486,-0.000271451,0.000238209,-1.139546279,0.255355115,neg,ns,0.665214137,Bcor,Bcor_Intron,X,12082611,12082660,12082611,12082612,50,-,CGGTAACAAGCAGAAAGACACCTGGACTATTATGCTGTAAAACTATTTTT,"Intron (Bcor-201/Bcor, intron 1 of 13)",20,12036743,12160355,123613,2,Bcor-201,77695,Bcor-202;Bcor-203;Bcor-204;Bcor-206;Bcor-201;Bcor-207;Bcor-205,Bcor;Bcor;Bcor;Bcor;Bcor;Bcor;Bcor,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,56,74,71458,ENSMUSG00000040363,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
314,cg17189172,0.00000277,0.00000282,0.981114489,0.32730135,gain,ns,-0.0000113,0.0000048,-2.359086128,0.018940015,neg,ns,-0.001977578,0.001405771,-1.406757302,0.160501076,neg,ns,0.794522052,0.0000567,0.0000483,1.172722361,0.241807516,pos,ns,0.901781656,Klhl29,Klhl29_Exon,12,5093605,5093654,5093653,5093654,50,-,TGCTGAGGATCTCCTCCTGGGCGGCCACCTCGGGGAAGATCTGCAGCGCG,"Exon (Klhl29-201/Klhl29, exon 8 of 14)",12,5077472,5375682,298211,2,Klhl29-201,282028,Klhl29-201;Klhl29-202,Klhl29;Klhl29,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,23,208439,ENSMUSG00000020627,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27624,cg08776801,0.0000978,0.0000174,5.610988096,4.46E-08,gain,yes,0.0000698,0.0000296,2.35889965,0.018949362,pos,ns,0.035681765,0.008674757,4.113286946,0.00005,pos,ns,4.300806335,-0.000308139,0.000298324,-1.032900098,0.302455779,neg,ns,0.197184325,Vsig8,Vsig8_Exon,1,172562134,172562183,172562134,172562135,50,+,CGGCGACTTGGCTAGTGAGATCAGGTAAAACCTGATGCATGCTGCATGCT,"Exon (Vsig8-201/Vsig8, exon 6 of 7)",1,172555938,172563717,7780,1,Vsig8-201,6196,Vsig8-201;Vsig8-202,Vsig8;Vsig8,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,240916,ENSMUSG00000049598,mapped to different genes,1,172562059,172562138,80,*,80,14,0.8375,1.131313131,0.175,9.15E-15,CpGisland,TRUE,NA,NRS
14704,cg02231695,-0.0000135,0.00000999,-1.351253522,0.177599534,loss,ns,0.00004,0.000017,2.358805013,0.018954107,pos,ns,0.010794724,0.004973293,2.170538654,0.030724844,pos,ns,1.512510312,-0.000337586,0.000171031,-1.973828591,0.049288876,neg,ns,0.823099923,2210408I21Rik,2210408I21Rik_Intron,13,77396853,77396902,77396853,77396854,50,+,CGCCTTTTTAGTATTTGTATGTCATCATGCCAGGCCTAGAAAATTAGGCT,"Intron (2210408I21Rik-201/2210408I21Rik, intron 19 of 19)",13,77135540,77613784,478245,1,2210408I21Rik-201,261313,2210408I21Rik-201,2210408I21Rik,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,19,20,72371,ENSMUSG00000071252,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18298,cg01553138,0.00000132,0.0000166,0.07941161,0.936756472,gain,ns,0.0000664,0.0000282,2.358798597,0.018954429,pos,ns,0.012189026,0.008250934,1.477290588,0.140612938,pos,ns,0.851974716,-0.000214066,0.000283749,-0.754420954,0.451169191,neg,ns,0.428934705,Gm48316,Gm48316_Exon,13,94702455,94702504,94702503,94702504,50,-,ATGAGTTGAATTGAGTACTTGTTATCAAATTTGAGCAATTCATAGCCCCG,"Exon (Gm32351-201/Gm32351-201, exon 1 of 3)",13,94752270,94752593,324,1,Gm48316-201,-49815,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,42,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
5247,cg22347640,-0.0000013,0.00000447,-0.291595172,0.770791192,loss,ns,-0.0000179,0.0000076,-2.358337238,0.018977577,neg,ns,-0.004297499,0.0022272,-1.929551926,0.054574755,neg,ns,1.263008208,-0.0000909,0.0000766,-1.187239372,0.236042157,neg,ns,0.811343837,Atxn7l1,Atxn7l1_Intron,12,33162697,33162746,33162697,33162698,50,+,CGCCATTTCCTGCCGGTTGCCTTTGAATGGATTACAGATGGTCAGAAAAA,"Intron (Atxn7l1-201/Atxn7l1, intron 1 of 2)",12,33147693,33251146,103454,1,Atxn7l1-201,15004,Atxn7l1-201;Atxn7l1-203;Atxn7l1-212;Atxn7l1-206;Atxn7l1-204;Atxn7l1-208,Atxn7l1;Atxn7l1;Atxn7l1;Atxn7l1;Atxn7l1;Atxn7l1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,24,380753,ENSMUSG00000020564,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24708,cg20406677,0.000382677,0.0000226,16.91659737,6.20E-46,gain,yes,-0.0000906,0.0000384,-2.358327957,0.018978043,neg,ns,0.017093943,0.011258911,1.518258973,0.129968272,pos,ns,0.886162655,-0.001412691,0.000387193,-3.648544942,0.000309326,neg,ns,0.381474425,Alpk1,Alpk1_Intron,3,127749158,127749207,127749206,127749207,50,-,TGAAAATGGCCAAAAGAAGCCATCACCTAATGACAGCCTTGTCACAAGCG,"Intron (Alpk1-201/Alpk1, intron 1 of 13)",3,127670310,127780527,110218,2,Alpk1-201,31320,Alpk1-201;Alpk1-203;Alpk1-204,Alpk1;Alpk1;Alpk1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,4,71481,ENSMUSG00000028028,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18237,cg00115348,0.000136309,0.00000773,17.6405656,1.04E-48,gain,yes,-0.000031,0.0000131,-2.358133215,0.018987822,neg,ns,-0.005117387,0.003845812,-1.330639039,0.184285745,neg,ns,0.734508257,0.000149288,0.000132257,1.128772427,0.259866604,pos,ns,0.817529738,Ap3b1,Ap3b1_Intergenic_downstream,13,94575964,94576013,94575964,94575965,50,-,CGCGGAAGCACCTGTCTGCATTGACGGCACAGAGCACTTCTTATTAGCGT,Distal Intergenic,13,94542303,94547867,5565,1,Ap3b1-202,33710,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,33,55,11774,ENSMUSG00000021686,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10598,cg08058566,0.000000187,0.00000438,0.042676444,0.965986932,gain,ns,-0.0000176,0.00000745,-2.357711155,0.01900903,neg,ns,-0.00394601,0.002182403,-1.808103716,0.071559369,neg,ns,1.145333497,0.0000184,0.0000751,0.245633415,0.806128562,pos,ns,0.844305787,Acin1,Acin1_Exon,14,54649541,54649590,54649589,54649590,50,-,TCAGTTCAGCCAATCGCACCTCACTGTGTACTGTATCTAGTCAACCGCCG,"Exon (Acin1-225/Acin1, exon 1 of 6)",14,54642161,54653616,11456,2,Acin1-208,4026,Acin1-208;Acin1-216;Acin1-202;Acin1-201;Acin1-219;Acin1-218;Acin1-221;Acin1-224;Acin1-203;Acin1-222;Acin1-205;Acin1-211;Acin1-225;Acin1-207;Acin1-204;Acin1-226;Acin1-213;Acin1-214;Acin1-209;Acin1-220;Gm17606-201,Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Gm17606,0;0;0;0;0;0;0;0;0;-3675;0;-3494;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,22,56215,ENSMUSG00000022185,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18918,cg02942509,0.000119915,0.0000163,7.370106322,1.56E-12,gain,yes,-0.0000652,0.0000276,-2.357600056,0.019014617,neg,ns,0.046499327,0.008097948,5.742112696,2.23E-08,pos,ns,7.651764542,-0.000897299,0.000278488,-3.222041345,0.00140815,neg,ns,0.277021524,Nfia,Nfia_Intron,4,97924549,97924598,97924549,97924550,50,-,CGGATGCAGGGTCCAACTTTTCAGACACTTGGCATGAGCTCAATAGGGAT,"Intron (Nfia-208/Nfia, intron 2 of 3)",4,97772734,98000466,227733,1,Nfia-208,151815,Nfia-208;Nfia-202;Nfia-203;Nfia-205;Nfia-201;Nfia-204;Nfia-207;Nfia-206,Nfia;Nfia;Nfia;Nfia;Nfia;Nfia;Nfia;Nfia,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,44,18027,ENSMUSG00000028565,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22474,cg04098967,0.0000187,0.00000769,2.43501321,0.015454973,gain,ns,-0.0000308,0.0000131,-2.357373338,0.019026021,neg,ns,0.016971441,0.003827344,4.434260734,0.0000128,pos,ns,4.891331937,-0.000747109,0.000131622,-5.676168489,3.17E-08,neg,yes,0.407588961,Gm12830,Gm12830_Intergenic_upstream,4,114779819,114779868,114779819,114779820,50,-,CGGACTTCACAAAGCAAGTTTTGTCCAAGACTGGTGGTCAGGGACTCTGA,Distal Intergenic,4,114821722,114856166,34445,1,Gm12830-201,-41903,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,12,26,433746,ENSMUSG00000055198,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3538,cg11295019,-0.0000202,0.00000951,-2.129502168,0.034000381,loss,ns,0.0000381,0.0000162,2.357366044,0.019026388,pos,ns,0.002243033,0.004731757,0.474038079,0.635806454,pos,ns,0.196675068,-0.000240183,0.000162725,-1.476005744,0.140957358,neg,ns,0.703105004,Gm12067,Gm12067_Intron,11,24448089,24448138,24448089,24448090,50,+,CGTGTCAGTTTTGCCCGTATTATTATGTGCAGATGTGCCAGCTGCCAGTA,"Intron (Gm12068-201/Gm12068-201, intron 1 of 3)",11,24552438,24553962,1525,2,Gm12067-201,105824,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,58,100417843,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18178,cg07266115,-0.00000192,0.00000143,-1.341654516,0.180689995,loss,ns,0.00000574,0.00000244,2.356976601,0.019045991,pos,ns,0.001389781,0.0007135,1.947836824,0.052336888,pos,ns,1.281192107,-0.0000131,0.0000245,-0.535601591,0.59261797,neg,ns,0.965933639,Ttc3,Ttc3_threeUTR,16,94394390,94394439,94394438,94394439,50,-,TAAAAATCACCAGTAATCCAACCACCTTGGAGAATACCGCTGTATTAACG,3' UTR,16,94370618,94469220,98603,1,Ttc3-201,23772,Ttc3-201;Ttc3-217;Ttc3-218;Ttc3-221;Ttc3-229;Ttc3-226;Ttc3-214;Ttc3-207;Ttc3-208;Ttc3-212;Ttc3-213;Ttc3-225;Ttc3-205;Ttc3-224;Ttc3-220;Ttc3-203;Ttc3-223;Ttc3-230;Ttc3-216;Ttc3-219;Ttc3-204;Ttc3-202;Ttc3-222;Ttc3-215;Ttc3-234;Ttc3-235;Ttc3-232,Ttc3;Ttc3;Ttc3;Ttc3;Ttc3;Ttc3;Ttc3;Ttc3;Ttc3;Ttc3;Ttc3;Ttc3;Ttc3;Ttc3;Ttc3;Ttc3;Ttc3;Ttc3;Ttc3;Ttc3;Ttc3;Ttc3;Ttc3;Ttc3;Ttc3;Ttc3;Ttc3,0;0;0;0;0;0;0;0;0;0;0;23623;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,1,22129,ENSMUSG00000040785,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13464,cg02144337,0.0000424,0.00000526,8.063705215,1.63E-14,gain,yes,-0.000021,0.00000893,-2.356607668,0.019064579,neg,ns,-0.000864451,0.002615579,-0.330500804,0.741244841,neg,ns,0.130038316,-0.000136369,0.0000899,-1.516057375,0.13052385,neg,ns,0.870790996,Xpo7,Xpo7_Exon,14,70668699,70668748,70668747,70668748,50,-,CATAGACCACTGGTTCCTACAGTCTTCAAAGATGATGATGTTCAGCACCG,"Exon (Xpo7-202/Xpo7, exon 26 of 28)",14,70654246,70766628,112383,2,Xpo7-202,97880,Xpo7-202;Xpo7-201;Xpo7-206;Xpo7-203;Xpo7-204,Xpo7;Xpo7;Xpo7;Xpo7;Xpo7,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,13,65246,ENSMUSG00000022100,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17858,cg03920701,-0.00000777,0.00000652,-1.19257517,0.233947824,loss,ns,0.0000261,0.0000111,2.356472156,0.01907141,pos,ns,0.009068606,0.003242839,2.796502224,0.00548857,pos,ns,2.260540791,-0.000353652,0.000111521,-3.171167595,0.001670187,neg,ns,0.847839133,Nr2c2,Nr2c2_Exon,6,92163209,92163258,92163257,92163258,50,+,AGATGGCTATGAGTATGCATACCTTAAAGCTATAGTTCTCTTTAGCCCCG,"Exon (Nr2c2-201/Nr2c2, exon 13 of 15)",6,92091390,92173057,81668,1,Nr2c2-201,71819,Nr2c2-201;Nr2c2-202;Nr2c2-205;Nr2c2-207;Nr2c2-206,Nr2c2;Nr2c2;Nr2c2;Nr2c2;Nr2c2,0;0;0;6228;-919,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,22026,ENSMUSG00000005893,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
824,cg12791866,0.00000818,0.0000101,0.811455116,0.417726955,gain,ns,-0.0000404,0.0000171,-2.356388422,0.019075632,neg,ns,0.030595893,0.005018824,6.096227752,3.22E-09,pos,ns,8.491622659,-0.001090933,0.000172597,-6.32069979,9.05E-10,neg,yes,0.772942504,Chd7,Chd7_Intron,4,8851703,8851752,8851703,8851704,50,+,CGGTGGGCTTAACCTCTGCTATTAATCTGTACAAGTGCCTCCTGGGCTTT,"Intron (Chd7-201/Chd7, intron 25 of 37)",4,8690921,8866810,175890,1,Chd7-201,160782,Chd7-201;Chd7-202;Chd7-206;Chd7-208,Chd7;Chd7;Chd7;Chd7,0;0;0;-3479,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,16,320790,ENSMUSG00000041235,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16039,cg07739774,-0.00000407,0.0000016,-2.539606752,0.011585934,loss,ns,0.00000642,0.00000272,2.356263465,0.019081935,pos,ns,0.001118363,0.00079765,1.402072499,0.161894117,pos,ns,0.790768932,-0.0000252,0.0000274,-0.918989238,0.358815694,neg,ns,0.951855557,Bnc2,Bnc2_Intron,4,84278973,84279022,84278973,84278974,50,-,CGCTGTCAGCAGTACTGTTGGCCTCTGCTAATATAATTACATTGACTTTT,"Intron (Bnc2-201/Bnc2, intron 7 of 7)",4,84275095,84675034,399940,2,Bnc2-201,396012,Bnc2-201;Bnc2-202;Bnc2-214;Bnc2-218;Bnc2-215;Bnc2-222;Bnc2-216;Bnc2-213;Bnc2-219,Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,91,242509,ENSMUSG00000028487,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22228,cg20971356,-0.0000183,0.00000792,-2.303034213,0.021938704,loss,ns,0.0000317,0.0000135,2.355778083,0.019106433,pos,ns,0.009062149,0.003944326,2.297515171,0.022255291,pos,ns,1.652566724,-0.000394692,0.000135645,-2.909744105,0.003878963,neg,ns,0.626706447,Cryba4,Cryba4_Intergenic_downstream,5,112081928,112081977,112081976,112081977,50,+,CCCAAACTGCATTATTACCATTTATAATTTTGATTGTTCATTTGCATACG,Distal Intergenic,5,112246494,112251162,4669,2,Cryba4-202,169185,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,8,12959,ENSMUSG00000066975,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2720,cg02004484,-0.00000272,0.00000329,-0.826440522,0.409189868,loss,ns,0.0000132,0.00000559,2.355643004,0.019113256,pos,ns,0.003640951,0.001636927,2.224260097,0.026850931,pos,ns,1.571040657,-0.000120808,0.0000563,-2.146029195,0.032646764,neg,ns,0.931374154,Klhl14,Klhl14_Intron,18,21610923,21610972,21610923,21610924,50,-,CGCTTTGTCTAGTGTGAAGTCACGCTCTGATTAAAAACATATAATGAAAG,"Intron (Klhl14-201/Klhl14, intron 2 of 7)",18,21550377,21652368,101992,2,Klhl14-201,41396,Klhl14-201;Klhl14-202,Klhl14;Klhl14,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,38,225266,ENSMUSG00000042514,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10725,cg09955948,-0.00000607,0.00000579,-1.048979137,0.295004825,loss,ns,0.0000232,0.00000983,2.355320284,0.019129564,pos,ns,0.008389066,0.00288091,2.911950447,0.003852405,pos,ns,2.414268117,-0.000256904,0.0000991,-2.593048598,0.009964027,neg,ns,0.885723643,Sf3b1,Sf3b1_threeUTR,1,55014864,55014913,55014864,55014865,50,-,CGTACACTTTCGTGCCTTTGTCTCCATCAGCAGTTCTGACTTCAAGCAGC,3' UTR,1,54985169,55027481,42313,2,Sf3b1-201,12568,Sf3b1-201;Sf3b1-203;Sf3b1-205;Sf3b1-208;Sf3b1-206;Sf3b1-204,Sf3b1;Sf3b1;Sf3b1;Sf3b1;Sf3b1;Sf3b1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,7,81898,ENSMUSG00000025982,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19622,cg21674369,-0.00000443,0.00000248,-1.786910758,0.074928898,loss,ns,-0.00000991,0.00000421,-2.355225101,0.019134377,neg,ns,-0.000584083,0.001232762,-0.473800227,0.635975882,neg,ns,0.196559353,-0.0000642,0.0000424,-1.513912341,0.131066933,neg,ns,0.955466623,Dip2b,Dip2b_Exon,15,100151295,100151344,100151295,100151296,50,-,CGCTGTCCCACGGAGAGGTCAAAGGAACCAGTGGGTCTCTAGCTGATGTA,"Exon (Dip2b-202/Dip2b, exon 5 of 38)",15,100038664,100219473,180810,1,Dip2b-202,112631,Dip2b-202;Dip2b-201,Dip2b;Dip2b,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,8,239667,ENSMUSG00000023026,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24541,cg04514882,0.0000165,0.00000491,3.35721525,0.000885415,gain,ns,-0.0000196,0.00000834,-2.354997567,0.019145885,neg,ns,0.012016282,0.002443363,4.917927932,0.00000142,pos,ns,5.847307457,-0.000364942,0.000084,-4.34314751,0.0000191,neg,ns,0.731623026,Taok2,Taok2_threeUTR,7,126869462,126869511,126869462,126869463,50,+,CGGCAGGACAAAGCAGACAGAGGCAGCCTGGGCCAAAGGCACAGTTCCGC,3' UTR,7,126865678,126871641,5964,2,Taok2-205,2130,Hirip3-201;Hirip3-204;Hirip3-205;Taok2-205;Taok2-201;Taok2-203;Taok2-202,Hirip3;Hirip3;Hirip3;Taok2;Taok2;Taok2;Taok2,7490;5619;5046;0;0;-2206;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,11,381921,ENSMUSG00000059981,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13971,cg00162326,0.0000121,0.00000259,4.662655166,0.00000465,gain,ns,-0.0000104,0.0000044,-2.354023906,0.019195201,neg,ns,-0.000359897,0.001289617,-0.279072613,0.780375184,neg,ns,0.10769655,-0.0000267,0.0000443,-0.602261359,0.547440435,neg,ns,0.951047613,Brd9,Brd9_Exon,13,73942614,73942663,73942662,73942663,50,+,GTCCTTTCTGATTCTAGGAGCGGCTGTTAGCTTTGAAGCGCAGCATGTCG,"Exon (Brd9-205/Brd9, exon 4 of 13)",13,73937811,73960894,23084,1,Brd9-206,4803,Brd9-206;Brd9-205;Brd9-201;Brd9-202;Brd9-211;Brd9-208;Brd9-207;Brd9-212;Brd9-209;Brd9-210;Brd9-203;Trip13-201,Brd9;Brd9;Brd9;Brd9;Brd9;Brd9;Brd9;Brd9;Brd9;Brd9;Brd9;Trip13,0;0;0;0;0;4504;4462;0;0;-1233;-2897;-4830,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,105246,ENSMUSG00000057649,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27424,cg21914511,-0.0000235,0.0000113,-2.072179605,0.03907516,loss,ns,0.0000453,0.0000192,2.353745338,0.01920933,pos,ns,0.012748633,0.005639481,2.260604032,0.024477054,pos,ns,1.611240856,-0.000461098,0.000193941,-2.377513954,0.018036075,neg,ns,0.413935824,Frmpd4,Frmpd4_Intron,X,167733015,167733064,167733063,167733064,50,-,ATGGCTGTGTGAACCACTTTCAAACGCTTAGCTCAGCCTTAAAAATAGCG,"Intron (Frmpd4-205/Frmpd4, intron 1 of 16)",20,167471309,167855077,383769,2,Frmpd4-205,122013,Frmpd4-205;Frmpd4-203;Frmpd4-201;Frmpd4-204;Frmpd4-202;Frmpd4-206;Frmpd4-207,Frmpd4;Frmpd4;Frmpd4;Frmpd4;Frmpd4;Frmpd4;Frmpd4,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,3,333605,ENSMUSG00000049176,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3172,cg26172888,-0.00000625,0.00000336,-1.862247365,0.063514186,loss,ns,-0.0000134,0.00000571,-2.35328988,0.019232452,neg,ns,-0.001071244,0.001671669,-0.640822651,0.522111343,neg,ns,0.282236872,0.0000751,0.0000575,1.306056812,0.192501516,pos,ns,0.935923796,Eif4a2,Eif4a2_threeUTR,16,23112427,23112476,23112427,23112428,50,-,CGAAACAGCACACTGTTTGAATAAAGAGCGAGTCGGTATTTATATTTGTT,3' UTR,16,23107444,23113947,6504,1,Eif4a2-201,4983,Eif4a2-201;Eif4a2-222;Eif4a2-216;Eif4a2-210;Eif4a2-223;Eif4a2-213;Eif4a2-208;Eif4a2-224;Eif4a2-202;Eif4a2-212;Eif4a2-206;Eif4a2-220;Eif4a2-218;Eif4a2-203;Eif4a2-209;Eif4a2-207;Eif4a2-214;Eif4a2-211;Eif4a2-204;Eif4a2-217;Eif4a2-221;Eif4a2-205;Eif4a2-219;Eif4a2-215;Rfc4-201;Rfc4-203;Rfc4-205;Rfc4-204,Eif4a2;Eif4a2;Eif4a2;Eif4a2;Eif4a2;Eif4a2;Eif4a2;Eif4a2;Eif4a2;Eif4a2;Eif4a2;Eif4a2;Eif4a2;Eif4a2;Eif4a2;Eif4a2;Eif4a2;Eif4a2;Eif4a2;Eif4a2;Eif4a2;Eif4a2;Eif4a2;Eif4a2;Rfc4;Rfc4;Rfc4;Rfc4,0;0;0;4669;0;4668;4668;4668;0;4660;4656;4654;4650;0;0;4648;4510;3845;3196;2451;2382;2194;1755;1728;15261;15241;2268;15215,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,TRUE,FALSE,threeUTR,3,3,13682,ENSMUSG00000022884,conserved gene and region,16,23112355,23112461,107,*,107,10,0.476635514,1.759868421,0.093457944,0.000000121,CpGisland,TRUE,U10,Tr-S
12849,cg00383161,-0.00000245,0.00000454,-0.538707763,0.590475139,loss,ns,0.0000182,0.00000772,2.353206203,0.019236703,pos,ns,0.006322624,0.002261399,2.795889962,0.005498718,pos,ns,2.259738581,-0.000138044,0.0000778,-1.775049695,0.076870861,neg,ns,0.923425745,Rsrc1,Rsrc1_Intron,3,67309863,67309912,67309911,67309912,50,+,TCCTGAAACTCCATGTGTCTCACTGAAATCTGTGCGGACGCTAAGCTTCG,"Intron (Rsrc1-206/Rsrc1, intron 7 of 9)",3,66981390,67356559,375170,1,Rsrc1-206,328473,Rsrc1-206;Rsrc1-203;Rsrc1-202;Rsrc1-201;Rsrc1-209;Rsrc1-205,Rsrc1;Rsrc1;Rsrc1;Rsrc1;Rsrc1;Rsrc1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,37,66880,ENSMUSG00000034544,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3426,cg20008614,-0.00000152,0.0000026,-0.583873713,0.559729873,loss,ns,0.0000104,0.00000442,2.352968111,0.019248802,pos,ns,0.002544522,0.001294124,1.966211894,0.050166171,pos,ns,1.299589049,-0.000101576,0.0000445,-2.282361356,0.023145167,neg,ns,0.942490356,Gm11892,Gm11892_Intergenic_upstream,4,24076756,24076805,24076756,24076757,50,-,CGATACAAGTGATTAGCATTAACTGATCTTCTTGAAGAATGTACTGGTAT,Distal Intergenic,4,24238100,24239301,1202,1,Gm11892-201,-161344,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,16,16,664973,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24776,cg01717089,-0.00000124,0.00000508,-0.243821251,0.807530539,loss,ns,-0.0000203,0.00000862,-2.352550046,0.019270063,neg,ns,0.000162656,0.002526316,0.064384712,0.948705401,pos,ns,0.022868627,-0.000136081,0.0000869,-1.566307648,0.118296794,neg,ns,0.928229386,Tial1,Tial1_fiveUTR,7,128446214,128446263,128446262,128446263,50,+,ACAAAACCATAGCCTTTGGATTTTCCAGTTGCCATGTCTTTAACTACCCG,5' UTR,7,128439777,128461672,21896,2,Tial1-202,15409,Tial1-202;Tial1-208;Tial1-203;Tial1-211;Tial1-206;Tial1-214;Tial1-201;Tial1-204;Tial1-209;Tial1-205;Tial1-210;Tial1-212;Tial1-213;Tial1-207,Tial1;Tial1;Tial1;Tial1;Tial1;Tial1;Tial1;Tial1;Tial1;Tial1;Tial1;Tial1;Tial1;Tial1,0;0;0;0;0;0;0;0;0;0;0;0;2307;0,TRUE,FALSE,FALSE,TRUE,TRUE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,5,21843,ENSMUSG00000030846,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24933,cg22870984,-0.000000138,0.00000491,-0.028027093,0.977658577,loss,ns,0.0000196,0.00000834,2.352417511,0.019276807,pos,ns,0.002952495,0.002443713,1.208200418,0.227891034,pos,ns,0.64227276,-0.0000792,0.000084,-0.942320103,0.346762541,neg,ns,0.877963022,Adgrb2,Adgrb2_fiveUTR,4,129992066,129992115,129992114,129992115,50,+,AGGATGACCCCAGCCTGTCCCCTCTTACTGTCTGTGATTCTGTCCCTGCG,Promoter (<=1kb),4,129992068,130022633,30566,1,Adgrb2-204,0,Adgrb2-207;Adgrb2-205;Adgrb2-208;Adgrb2-204;Adgrb2-201;Adgrb2-202;Adgrb2-206,Adgrb2;Adgrb2;Adgrb2;Adgrb2;Adgrb2;Adgrb2;Adgrb2,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,8,230775,ENSMUSG00000028782,conserved gene but different region,4,129992114,129992221,108,*,108,9,0.712962963,0.708454811,0.083333333,0.00000176,CpGisland,TRUE,NA,NRS
8029,cg25086261,-0.0000232,0.0000103,-2.262783908,0.024340668,loss,ns,0.000041,0.0000175,2.352359527,0.019279759,pos,ns,0.006415291,0.005112417,1.254845163,0.21048017,pos,ns,0.676788815,-0.000100959,0.000175816,-0.574230454,0.566228288,neg,ns,0.677025505,Pax5,Pax5_Exon,4,44697529,44697578,44697577,44697578,50,+,GAATTTTGCTGACACAACCATGGCTGACCCGAAGCTGCCTGGAGATGTCG,"Exon (Pax5-201/Pax5, exon 2 of 10)",4,44524757,44710487,185731,2,Pax5-201,12909,Pax5-201;Pax5-202;Pax5-203;Pax5-204;Pax5-205;Pax5-207;Pax5-206;Pax5-209;Pax5-210;Pax5-212;Pax5-213;Pax5-214;Pax5-215;Pax5-208;Pax5-216;Pax5-217;Pax5-218;Pax5-219,Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,45,18507,ENSMUSG00000014030,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17658,cg11142389,0.000123071,0.00000854,14.41655966,2.06E-36,gain,yes,-0.0000341,0.0000145,-2.352231693,0.019286267,neg,ns,0.014816304,0.004248849,3.487133518,0.000558783,pos,ns,3.252756525,-0.00037892,0.000146118,-2.593256405,0.009958138,neg,ns,0.156199549,Zic4,Zic4_Intron,9,91367400,91367449,91367448,91367449,50,-,ACATTTGGATTCAGTGCAAACATACAACACTCGCTTGTTTTCGCGATGCG,"Intron (Zic4-208/Zic4, intron 1 of 2)",9,91362413,91378915,16503,1,Zic4-208,4987,Zic1-201;Zic1-202;Zic1-203;Zic4-208;Zic4-206;Zic4-207;Zic4-211;Zic4-204;Zic4-203;Zic4-210;Zic4-209;Zic4-212,Zic1;Zic1;Zic1;Zic4;Zic4;Zic4;Zic4;Zic4;Zic4;Zic4;Zic4;Zic4,0;0;-4346;0;0;0;0;0;0;-3555;0;-3901,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,55,22774,ENSMUSG00000036972,mapped to different genes,9,91367412,91367502,91,*,91,9,0.516483517,1.568965517,0.098901099,0.000000407,CpGisland,TRUE,U13,Hc-P
20639,cg21727711,0.00000132,0.00000764,0.172434017,0.863208851,gain,ns,0.0000305,0.000013,2.351823943,0.019307038,pos,ns,0.011397255,0.003800608,2.998797707,0.002929977,pos,ns,2.533135854,-0.000374513,0.000130703,-2.865380156,0.004449721,neg,ns,0.903168329,Pou4f1,Pou4f1_Intergenic_downstream,14,104280659,104280708,104280659,104280660,50,-,CGCCCGAAGGCCTCGATGATAACAGCATTGATTCCAATGTACATCTAATT,Distal Intergenic,14,104463973,104465365,1393,2,Pou4f1-202,184706,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,31,18996,ENSMUSG00000048349,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25153,cg02765821,-0.0000411,0.0000138,-2.96768351,0.003234208,loss,ns,0.0000553,0.0000235,2.351008505,0.019348637,pos,ns,-0.004562371,0.006891506,-0.662028184,0.508444985,neg,ns,0.293756032,0.000256058,0.000236998,1.080422227,0.280794026,pos,ns,0.438245148,Gm14103,Gm14103_Intergenic_upstream,2,133114003,133114052,133114051,133114052,50,-,CAAGTATTCCAGAAATATATGCAAGACTGTTTAGTCATTCATAATCACCG,Distal Intergenic,2,133047187,133047552,366,2,Gm14103-201,-66500,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,100416758,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19046,cg04808014,0.000137228,0.0000085,16.14201215,5.73E-43,gain,yes,-0.000034,0.0000144,-2.350709524,0.019363909,neg,ns,0.003217876,0.004231184,0.760514225,0.447525313,pos,ns,0.349182395,0.000094,0.00014551,0.646051689,0.518723837,pos,ns,0.180664607,Cdk12,Cdk12_Intergenic_downstream,11,98284376,98284425,98284376,98284377,50,+,CGAATTGCCATCTCCTTGAGCTCTCTGTGGAGCAATCTCAGAGAGCAGTA,Distal Intergenic,11,98263502,98268011,4510,1,Cdk12-204,20874,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,25,69131,ENSMUSG00000003119,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25104,cg03606435,-0.0000464,0.0000059,-7.861944011,6.31E-14,loss,yes,-0.0000236,0.00001,-2.350526524,0.019373262,neg,ns,-0.005366331,0.002938821,-1.826014803,0.068809832,neg,ns,1.162349504,0.0000115,0.000101066,0.113427239,0.909765266,pos,ns,0.854104607,Fgr,Fgr_Exon,4,132987243,132987292,132987291,132987292,50,-,ATGACCTCACCTTCACCAAGGGCGAGAAGTTCCACATCCTGAACAATACG,"Exon (Fgr-201/Fgr, exon 4 of 13)",4,132974102,133001910,27809,1,Fgr-201,13141,Fgr-202;Fgr-201;Fgr-203;Fgr-204,Fgr;Fgr;Fgr;Fgr,13148;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,14191,ENSMUSG00000028874,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22862,cg07190012,0.000000999,0.0000026,0.383790849,0.701396562,gain,ns,0.0000104,0.00000442,2.350492208,0.019375017,pos,ns,0.007313385,0.001296104,5.64259295,3.78E-08,pos,ns,7.422552907,-0.000209818,0.0000446,-4.707297786,0.00000379,neg,ns,0.085933436,Sox6,Sox6_fiveUTR,7,116038696,116038745,116038696,116038697,50,-,CGGGAGAAAAGCTGTTTGTGTTAGCCTGCGAGTTACCCAGGGCTGCAGTG,Promoter (<=1kb),7,115471344,116038744,567401,2,Sox6-204,0,1110004F10Rik-205;1110004F10Rik-206;Sox6-204;Sox6-214;Sox6-208,1110004F10Rik;1110004F10Rik;Sox6;Sox6;Sox6,-652;-967;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,57,20679,ENSMUSG00000051910,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
14512,cg00050268,-0.00000328,0.00000222,-1.474828343,0.141273549,loss,ns,0.00000888,0.00000378,2.350056764,0.019397289,pos,ns,0.002834056,0.001107088,2.559918724,0.010943635,pos,ns,1.960838395,-0.0000868,0.0000381,-2.279476144,0.02331807,neg,ns,0.957209099,Ptprd,Ptprd_Intron,4,76137019,76137068,76137019,76137020,50,+,CGAAGGTCCACTCAACGTCGATTCAATCTCTTGCTAAGTTGCACAGACAG,"Intron (Ptprd-206/Ptprd, intron 7 of 35)",4,75941238,76449980,508743,2,Ptprd-206,312912,Ptprd-206;Ptprd-204;Ptprd-213;Ptprd-220;Ptprd-203;Ptprd-217;Ptprd-218;Ptprd-219;Ptprd-201;Ptprd-221;Ptprd-205;Ptprd-202,Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd,0;0;0;0;0;0;0;0;0;-2876;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,32,19266,ENSMUSG00000028399,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7163,cg14748407,0.0000715,0.0000135,5.315913673,0.000000203,gain,yes,-0.0000537,0.0000229,-2.349837248,0.019408526,neg,ns,0.033309908,0.006698613,4.972657661,0.0000011,pos,ns,5.96038199,-0.000690096,0.000230365,-2.995665178,0.002959373,neg,ns,0.732205869,Lcor,Lcor_fiveUTR,19,41552490,41552539,41552490,41552491,50,+,CGTGAGATCATGCAGCGAATGATCCAACAATTTGCTGCTGAATATACCTC,5' UTR,19,41482637,41562261,79625,1,Lcor-201,69853,Lcor-201;Lcor-204;Lcor-206;Lcor-202;Lcor-205,Lcor;Lcor;Lcor;Lcor;Lcor,0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,25,212391,ENSMUSG00000025019,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19515,cg09732542,0.00000567,0.0000021,2.702005018,0.007271779,gain,ns,0.00000837,0.00000356,2.349733505,0.019413838,pos,ns,0.002752763,0.001044013,2.63671184,0.008793085,pos,ns,2.055858721,-0.0000378,0.0000359,-1.051455617,0.293868312,neg,ns,0.947874575,Armc8,Armc8_Exon,9,99505704,99505753,99505704,99505705,50,+,CGGTCCATCATATTTTCAGTCTCAATGATCTGGAGAAAAAGGTTAATGCT,"Exon (Armc8-201/Armc8, exon 13 of 22)",9,99478372,99568899,90528,2,Armc8-201,63146,Armc8-201,Armc8,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,10,74125,ENSMUSG00000032468,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
860,cg04629621,0.00000247,0.00000377,0.655390034,0.512702723,gain,ns,-0.0000151,0.00000641,-2.349388432,0.019431518,neg,ns,0.001837739,0.001877577,0.978782128,0.328450853,pos,ns,0.483529605,-0.0000986,0.0000646,-1.526657168,0.127865891,neg,ns,0.846983244,Dmtf1,Dmtf1_Exon,5,9132561,9132610,9132609,9132610,50,+,TCGTCTTTTGACATCTCAAAGATGATTTCTGTAGCATCTTTTATTCCGCG,"Exon (Dmtf1-201/Dmtf1, exon 8 of 18)",5,9118801,9161776,42976,2,Dmtf1-201,29166,Dmtf1-201;Dmtf1-209;Dmtf1-202;Dmtf1-208;Dmtf1-214;Dmtf1-212;Dmtf1-213;Dmtf1-204;Dmtf1-207;Dmtf1-215;Dmtf1-216;Dmtf1-211;Dmtf1-205;Tmem243-202,Dmtf1;Dmtf1;Dmtf1;Dmtf1;Dmtf1;Dmtf1;Dmtf1;Dmtf1;Dmtf1;Dmtf1;Dmtf1;Dmtf1;Dmtf1;Tmem243,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,11,23857,ENSMUSG00000042508,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18966,cg08198774,-0.00000501,0.00000444,-1.128290123,0.260069854,loss,ns,-0.0000177,0.00000755,-2.34900349,0.019451256,neg,ns,-0.005049961,0.002211514,-2.283485635,0.023078096,neg,ns,1.636800027,-0.0000616,0.0000761,-0.810528234,0.418258434,neg,ns,0.857362909,Nfia,Nfia_Exon,4,98081750,98081799,98081750,98081751,50,+,CGCAAACCGATTCGTCAGTGTTGGACCACGGGATCCAAGCTTTGTAAATA,"Exon (Nfia-202/Nfia, exon 10 of 11)",4,97777608,98118871,341264,1,Nfia-202,304142,Nfia-202;Nfia-203;Nfia-205;Nfia-201;Nfia-204,Nfia;Nfia;Nfia;Nfia;Nfia,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,44,18027,ENSMUSG00000028565,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27073,cg18146660,-0.0000111,0.00000424,-2.608755521,0.009527629,loss,ns,-0.0000169,0.0000072,-2.348935197,0.01945476,neg,ns,-0.001833062,0.002109854,-0.86880969,0.385623362,neg,ns,0.413836663,0.0000486,0.0000726,0.669991911,0.503361705,pos,ns,0.88095718,Ctnnbl1,Ctnnbl1_Exon,2,157789004,157789053,157789004,157789005,50,-,CGAGCTGGACCTAAATGACATCATTCAGGAGATGCACGTGGTGGCCACCA,"Exon (Ctnnbl1-201/Ctnnbl1, exon 4 of 16)",2,157737401,157891614,154214,1,Ctnnbl1-201,51603,Ctnnbl1-201;Ctnnbl1-203;Ctnnbl1-202;Ctnnbl1-204,Ctnnbl1;Ctnnbl1;Ctnnbl1;Ctnnbl1,0;0;-778;-811,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,8,66642,ENSMUSG00000027649,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9190,cg12854758,-0.0000058,0.00000611,-0.949308362,0.343203275,loss,ns,0.0000244,0.0000104,2.348929225,0.019455067,pos,ns,0.008759226,0.00304134,2.880055232,0.004252968,pos,ns,2.371307898,-0.000254325,0.000104591,-2.431600689,0.015598507,neg,ns,0.916987477,Cul1,Cul1_Exon,6,47497293,47497342,47497341,47497342,50,+,AGCAAAGTGCTGAATGGAATTTGTGCCTACCTCAATAGACATTGGGTTCG,"Exon (Cul1-204/Cul1, exon 4 of 20)",6,47453904,47523766,69863,1,Cul1-204,43389,Cul1-205;Cul1-204;Cul1-201,Cul1;Cul1;Cul1,43895;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,26965,ENSMUSG00000029686,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27058,cg05782860,-5.25E-08,0.00000445,-0.011807025,0.990587171,loss,ns,0.0000177,0.00000755,2.348754827,0.019464017,pos,ns,0.004671751,0.002212427,2.111595564,0.035521132,pos,ns,1.449513204,-0.0000627,0.0000761,-0.82344818,0.4108862,neg,ns,0.897899326,Phex,Phex_Exon,X,157370562,157370611,157370562,157370563,50,-,CGGATGAACACAGAATTGCTGTATTGACCACGAAACGTTGCAAGTGTCTG,"Exon (Phex-201/Phex, exon 5 of 22)",20,157162075,157415286,253212,2,Phex-201,44675,Phex-201;Phex-203,Phex;Phex,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,18675,ENSMUSG00000057457,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11967,cg13853159,0.00000981,0.00000434,2.257967117,0.024642923,gain,ns,0.0000173,0.00000738,2.348483767,0.019477934,pos,ns,0.004788684,0.002161981,2.214951614,0.027490156,pos,ns,1.560822788,-0.000048,0.0000744,-0.645041107,0.519377627,neg,ns,0.075058214,Tbr1,Tbr1_Exon,2,61806013,61806062,61806013,61806014,50,+,CGATCCCACGGCTCATTACAATATTTTTGTGGATGTGATTTTGGCGGATC,"Exon (Tbr1-201/Tbr1, exon 2 of 6)",2,61804453,61814114,9662,1,Tbr1-201,1560,Tbr1-204;Tbr1-201;Tbr1-202;Tbr1-203,Tbr1;Tbr1;Tbr1;Tbr1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,24,27,21375,ENSMUSG00000035033,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
25428,cg00134706,0.00000229,0.00000469,0.489288242,0.624983659,gain,ns,0.0000187,0.00000797,2.348236419,0.019490642,pos,ns,0.003248367,0.002333666,1.391958627,0.164932754,pos,ns,0.78269309,0.0000195,0.0000803,0.242691355,0.808404998,pos,ns,0.938767268,Gm5904,Gm5904_Intergenic_upstream,7,136475745,136475794,136475745,136475746,50,+,CGGCATCTTGTAATTCTATTAGGGTGTTAGATTCAAATGCAGAATTAGCT,Distal Intergenic,7,136657209,136658073,865,1,Gm5904-201,-181415,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,14,17,546009,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17545,cg13710341,-0.0000417,0.0000334,-1.24787383,0.213019019,loss,ns,-0.00013328,0.0000568,-2.348112502,0.019497011,neg,ns,0.055841385,0.016628944,3.358083736,0.000882736,pos,ns,3.054169173,-0.002343003,0.000571868,-4.097104067,0.0000535,neg,ns,0.39298591,Eva1c,Eva1c_threeUTR,16,90869593,90869642,90869593,90869594,50,+,CGGGCCTGCCACCTCCTGGTCAATAGCCGTGTTTTTGGACCTGACCTTTG,3' UTR,16,90826719,90904695,77977,1,Eva1c-209,42874,Eva1c-209;Eva1c-210;Eva1c-203;Eva1c-204;Eva1c-201;Eva1c-206;Eva1c-208;Eva1c-202;Eva1c-207,Eva1c;Eva1c;Eva1c;Eva1c;Eva1c;Eva1c;Eva1c;Eva1c;Eva1c,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,2,70967,ENSMUSG00000039903,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
558,cg20109856,0.0000398,0.00000992,4.014636505,0.0000747,gain,ns,-0.0000396,0.0000169,-2.347832051,0.019511433,neg,ns,-0.005583197,0.004938089,-1.130639213,0.259080951,neg,ns,0.586564517,0.000311145,0.00016982,1.832198817,0.067881018,pos,ns,0.169471777,Dlx6,Dlx6_Intergenic_downstream,6,6871661,6871710,6871709,6871710,50,+,TGCCAGCAAAATTAGCTGTTATTACTGTCACTGTTTAGTGATGGTTAGCG,Distal Intergenic,6,6863798,6865430,1633,1,Dlx6-204,7863,Dlx6-203;Dlx6-202;Dlx6-201,Dlx6;Dlx6;Dlx6,0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,36,13396,ENSMUSG00000029754,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
1603,cg20042949,0.00000514,0.00000463,1.108864036,0.268348347,gain,ns,0.0000185,0.00000787,2.347755094,0.019515392,pos,ns,0.000373409,0.002306745,0.161877088,0.871508101,pos,ns,0.059728572,-0.0000427,0.0000793,-0.538208459,0.590819348,neg,ns,0.879095718,Gpr85,Gpr85_Exon,6,13836221,13836270,13836269,13836270,50,+,CAGTTCTGGCTGACTGCTGCTACAAACTGGACTGGCTTCATTTTTCTTCG,"Exon (Gpr85-201/Gpr85, exon 4 of 4)",6,13834458,13839942,5485,2,Gpr85-201,3672,Gpr85-201;Gpr85-203;Gpr85-202;Gpr85-204,Gpr85;Gpr85;Gpr85;Gpr85,0;0;0;3225,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,64450,ENSMUSG00000048216,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6751,cg23302801,0.0000293,0.00000349,8.399227688,1.64E-15,gain,yes,-0.0000139,0.00000593,-2.347708296,0.0195178,neg,ns,0.000762932,0.001737903,0.438995667,0.660970493,pos,ns,0.179817928,0.0000424,0.0000598,0.710075708,0.478190984,pos,ns,0.108085625,Lhx2,Lhx2_Intron,2,38347866,38347915,38347914,38347915,50,+,CTTCTGAACGTCTTCATTTTGATTTAATGGTATATCAGCGTCAACTATCG,"Intron (Lhx2-203/Lhx2, intron 1 of 4)",2,38339281,38369199,29919,1,Lhx2-203,8585,Lhx2-203;Lhx2-204;Lhx2-202;Lhx2-201;Lhx2-207;Lhx2-205,Lhx2;Lhx2;Lhx2;Lhx2;Lhx2;Lhx2,0;0;0;0;-3853;-4617,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,33,16870,ENSMUSG00000000247,mapped to different genes,2,38347822,38348178,357,*,357,27,0.518207283,1.126841244,0.075630252,1.55E-17,CpGisland,TRUE,U3,Pr-B
22966,cg24304767,-0.00000164,0.00000131,-1.248138491,0.21292223,loss,ns,-0.00000523,0.00000223,-2.347598165,0.019523467,neg,ns,-0.00075998,0.00065232,-1.16504097,0.244898111,neg,ns,0.611014564,0.0000199,0.0000224,0.887978796,0.375240601,pos,ns,0.961558536,Cnot2,Cnot2_threeUTR,10,116485458,116485507,116485506,116485507,50,+,GGCAAACATTTTCCAAAATAGATGTCATATATATAATATATACACATTCG,3' UTR,10,116485161,116581511,96351,2,Cnot2-210,96004,Cnot2-210;Cnot2-204;Cnot2-212;Cnot2-203;Cnot2-202;Cnot2-213;Cnot2-209,Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,9,15,72068,ENSMUSG00000020166,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2299,cg16434122,0.0000367,0.0000103,3.580849713,0.000397436,gain,ns,0.0000409,0.0000174,2.347560249,0.019525419,pos,ns,0.011714397,0.005104729,2.294812718,0.022411762,pos,ns,1.649524005,-0.000065,0.000175551,-0.370405039,0.711333675,neg,ns,0.513304647,Rorb,Rorb_fiveUTR,19,18983347,18983396,18983395,18983396,50,+,CTTGACATTCCTAGGGCAAGACACTTCTGCAGTCGGCAGTGTTGGCAACG,5' UTR,19,18930605,19001117,70513,2,Rorb-201,17721,Rorb-201;Rorb-203;Rorb-202;Rorb-205;Rorb-204,Rorb;Rorb;Rorb;Rorb;Rorb,0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,10,225998,ENSMUSG00000036192,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
658,cg09597053,0.0000722,0.0000109,6.622647963,1.56E-10,gain,yes,0.0000435,0.0000185,2.347439916,0.019531613,pos,ns,0.019744553,0.005428221,3.637389678,0.000322453,pos,ns,3.491533354,-0.000306885,0.000186676,-1.643942484,0.101201809,neg,ns,0.536073814,Ppp1r3f,Ppp1r3f_Exon,X,7573251,7573300,7573251,7573252,50,-,CGCCTCACCGGCTTCATGCAGCTCTTCAGCTGCCTGGCCTCAGCCTCCAC,Promoter (<=1kb),20,7557296,7574283,16988,2,Ppp1r3f-205,983,Foxp3-209;Ppp1r3f-205;Ppp1r3f-201;Ppp1r3f-203,Foxp3;Ppp1r3f;Ppp1r3f;Ppp1r3f,-344;0;0;-408,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,8,54646,ENSMUSG00000039556,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
8378,cg06391736,0.0000776,0.00000999,7.761103759,1.23E-13,gain,yes,-0.0000399,0.000017,-2.347427353,0.01953226,neg,ns,0.004231571,0.004973463,0.850829858,0.395520578,pos,ns,0.402830916,-0.000151918,0.000171037,-0.888214545,0.375114,neg,ns,0.615787806,Kazald1,Kazald1_Promoter,19,45067433,45067482,45067481,45067482,50,-,AATACTTGTTCTCGGCTTAATTTCCATCTAATTGCTCTTTAACGACGCCG,Promoter (7-8kb),19,45075241,45079289,4049,1,Kazald1-202,-7808,NA,NA,NA,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,3,8,107250,ENSMUSG00000025213,conserved gene but different region,19,45067445,45067726,282,*,282,17,0.620567376,0.62962963,0.060283688,1.14E-09,CpGisland,TRUE,U13,Hc-P
15270,cg11418694,-0.00000641,0.00000187,-3.434035487,0.000675587,loss,ns,0.00000744,0.00000317,2.347289026,0.019539383,pos,ns,0.002379558,0.00092886,2.561803944,0.010885665,pos,ns,1.963145044,-0.0000688,0.0000319,-2.154997271,0.031931851,neg,ns,0.070096208,Zfp36l1,Zfp36l1_threeUTR,12,80109180,80109229,80109180,80109181,50,+,CGCTGAAGAGGTAATGTAGTCACAGTGACAAAGTTAGATTACAAGGCACT,3' UTR,12,80107754,80113013,5260,2,Zfp36l1-201,3784,Zfp36l1-201;Zfp36l1-202;Zfp36l1-204;Zfp36l1-203,Zfp36l1;Zfp36l1;Zfp36l1;Zfp36l1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,8,12192,ENSMUSG00000021127,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
6096,cg09123536,-0.00000391,0.0000069,-0.566232979,0.571645087,loss,ns,0.0000275,0.0000117,2.347019227,0.019553284,pos,ns,0.008277824,0.00343291,2.411313973,0.016476369,pos,ns,1.78313848,-0.000121405,0.000118057,-1.028352559,0.304585713,neg,ns,0.922023345,Kpna1,Kpna1_threeUTR,16,36023209,36023258,36023209,36023210,50,-,CGAGCTGTGGGAAACATTGTCACAGGGGATGATATTCAGACACAGGTATG,3' UTR,16,35983315,36037131,53817,1,Kpna1-201,39894,Kpna1-201;Kpna1-209;Kpna1-207;Kpna1-210;Kpna1-202;Kpna1-206;Kpna1-204,Kpna1;Kpna1;Kpna1;Kpna1;Kpna1;Kpna1;Kpna1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,5,16646,ENSMUSG00000022905,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13647,cg00586556,-0.000011,0.0000114,-0.965213254,0.335190365,loss,ns,-0.0000456,0.0000194,-2.346981971,0.019555204,neg,ns,-0.010299018,0.005686393,-1.811168913,0.071082514,neg,ns,1.14823722,0.00000101,0.000195555,0.005183217,0.995867744,pos,ns,0.605929062,Unc13a,Unc13a_threeUTR,8,71636537,71636586,71636537,71636538,50,+,CGTCTGAGTGGCTTGGCAATTTCACCCTGCCCTGTGGAGAGAATCAGGTG,3' UTR,8,71624417,71671757,47341,2,Unc13a-201,35171,Unc13a-201;Unc13a-208;Unc13a-203;Unc13a-207;Unc13a-204,Unc13a;Unc13a;Unc13a;Unc13a;Unc13a,0;0;0;0;9367,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,2,382018,ENSMUSG00000034799,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11055,cg27565404,0.000123329,0.0000108,11.46252635,1.35E-25,gain,yes,-0.0000429,0.0000183,-2.345895592,0.019611267,neg,ns,0.001524852,0.005355026,0.28475146,0.776024692,pos,ns,0.11012446,0.000114497,0.000184159,0.621729411,0.534576762,pos,ns,0.400298709,Gm18027,Gm18027_Intergenic_upstream,12,56459713,56459762,56459713,56459714,50,-,CGGATCTAATCCTTTCATGGCTCAGCTTGTTAATGTAGCAAACTGCTGAA,Distal Intergenic,12,56409939,56410557,619,2,Gm18027-201,-49205,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,8,100416309,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3512,cg07717026,0.0000173,0.00000685,2.532499969,0.011818477,gain,ns,0.0000273,0.0000116,2.345645236,0.019624207,pos,ns,-0.004013239,0.00340796,-1.177607266,0.239856486,neg,ns,0.620048533,0.00023914,0.000117199,2.040454293,0.042152132,pos,ns,0.747706295,Bcl11a,Bcl11a_Intergenic_downstream,11,24282756,24282805,24282804,24282805,50,-,ATCTAAGATGGCACCTTGGTGCCCTGCCACATTCGGTCTCCTTGGTACCG,Distal Intergenic,11,24142379,24163291,20913,1,Bcl11a-206,140426,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,15,98,14025,ENSMUSG00000000861,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17675,cg22269110,-0.0000048,0.00000911,-0.527462118,0.598250008,loss,ns,0.0000363,0.0000155,2.34553994,0.019629651,pos,ns,0.015230287,0.00453214,3.360506462,0.000875302,pos,ns,3.057841918,-0.000434481,0.00015586,-2.787638711,0.005637143,neg,ns,0.373654794,Elavl2,Elavl2_Intron,4,91374390,91374439,91374438,91374439,50,+,GGTGGGTACGTAGCAACGTGCTGGGCATAAATTAAGCAACAATGGCCACG,"Intron (Elavl2-208/Elavl2, intron 1 of 7)",4,91250763,91376463,125701,2,Elavl2-208,2024,Elavl2-204;Elavl2-201;Elavl2-207;Elavl2-208;Elavl2-202;Elavl2-209;Elavl2-203;Elavl2-205;Elavl2-215;Elavl2-212;Elavl2-214,Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,31,15569,ENSMUSG00000008489,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
4166,cg03252517,-0.0000476,0.0000114,-4.169131949,0.0000397,loss,ns,0.0000455,0.0000194,2.345473541,0.019633085,pos,ns,0.005152362,0.005679934,0.907116618,0.365049705,pos,ns,0.437647998,-0.000539282,0.000195332,-2.760843663,0.006108725,neg,ns,0.627055918,Gm49977,Gm49977_Intergenic_upstream,18,27109160,27109209,27109208,27109209,50,+,TTCCTTGTCAGTGGTGAGGAATGCCTTAGTTTCCTTTAAATTAGGAGTCG,Distal Intergenic,18,27090843,27091187,345,2,Gm49977-201,-17973,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,3,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16133,cg23834958,-0.0000189,0.0000107,-1.759399995,0.079496003,loss,ns,-0.0000427,0.0000182,-2.345286546,0.019642759,neg,ns,0.017904606,0.005338718,3.353727422,0.000896251,pos,ns,3.047570541,-0.00033119,0.000183598,-1.803887483,0.072219592,neg,ns,0.758759477,Aatf,Aatf_Intron,11,84481932,84481981,84481932,84481933,50,+,CGACTTGCTAGTGTTTTAAAAAAGACACAAATTTATTAATTGCCGGTGGC,"Intron (Aatf-201/Aatf, intron 5 of 12)",11,84422855,84513522,90668,2,Aatf-201,31541,Aatf-201;Aatf-202;Aatf-204,Aatf;Aatf;Aatf,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,10,56321,ENSMUSG00000018697,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17073,cg13636207,0.0000147,0.00000589,2.501776083,0.012872356,gain,ns,-0.0000234,0.00001,-2.345210411,0.019646698,neg,ns,0.001797255,0.002929049,0.613596778,0.539931779,pos,ns,0.267661111,-0.0000144,0.00010073,-0.143021462,0.886366147,neg,ns,0.027391731,Gata2,Gata2_Intron,6,88197422,88197471,88197470,88197471,50,+,GATTATTAAAAAGTTCATTTCCTGGCGAATCGGGTGACGTCAGGGGCTCG,"Intron (Gata2-202/Gata2, intron 1 of 5)",6,88193891,88207032,13142,1,Gata2-202,3531,Gata2-202;Gata2-203;Gata2-201;Gata2-205,Gata2;Gata2;Gata2;Gata2,0;-863;0;-3448,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,12,14461,ENSMUSG00000015053,conserved gene and region,6,88197447,88197596,150,*,150,17,0.726666667,0.862068966,0.113333333,2.99E-14,CpGisland,TRUE,U3,Pr-B
8468,cg11105442,-0.00000174,0.000000986,-1.762788971,0.078921395,loss,ns,0.00000393,0.00000167,2.344884052,0.019663595,pos,ns,0.001267928,0.000490692,2.583959913,0.010224638,pos,ns,1.990352068,-0.0000328,0.0000169,-1.944794248,0.052703827,neg,ns,0.033610885,Gpr137c,Gpr137c_threeUTR,14,45220820,45220869,45220820,45220821,50,+,CGTCACCAGGCAGAGCTGTTCCTCTGCTATTGTTGCTGCGTTTCTTTTAT,3' UTR,14,45219717,45224713,4997,1,Gpr137c-207,1103,Gpr137c-207;Gpr137c-202;Gpr137c-205;Gpr137c-201;Gpr137c-206;Gpr137c-204;Txndc16-205;Txndc16-201;Txndc16-203;Txndc16-207;Txndc16-204;Txndc16-206;Txndc16-209;Txndc16-211;Txndc16-208;Txndc16-202,Gpr137c;Gpr137c;Gpr137c;Gpr137c;Gpr137c;Gpr137c;Txndc16;Txndc16;Txndc16;Txndc16;Txndc16;Txndc16;Txndc16;Txndc16;Txndc16;Txndc16,0;0;0;0;0;0;-1395;-1426;0;-1430;-1438;-1423;-1418;-1424;-1456;-1430,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,6,70713,ENSMUSG00000049092,conserved gene but different region,14,45220805,45220995,191,*,191,13,0.539267016,0.994791667,0.068062827,3.86E-08,CpGisland,TRUE,NA,NRS
543,cg02898094,0.000115289,0.00000855,13.47757411,6.68E-33,gain,yes,-0.0000341,0.0000145,-2.344549281,0.01968094,neg,ns,0.014510367,0.00425747,3.408213266,0.000740294,pos,ns,3.130596032,-0.000375241,0.000146414,-2.562876034,0.010852821,neg,ns,0.084362767,Dlx6,Dlx6_Promoter,6,6862946,6862995,6862994,6862995,50,+,TTCGACTCGTGGCGTCTGCATCAAGTCTGAAAGCAGACGCGCAACTTTCG,Promoter (<=1kb),6,6863334,6867970,4637,1,Dlx6-203,-339,Dlx6-203;Dlx6-202;Dlx6-201;Dlx6-204,Dlx6;Dlx6;Dlx6;Dlx6,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,9,36,13396,ENSMUSG00000029754,conserved gene but different region,6,6862843,6862995,153,*,153,14,0.581699346,1.081818182,0.091503268,1.88E-10,CpGisland,TRUE,U3,Pr-B
8034,cg02047068,-0.0000655,0.0000251,-2.609558345,0.009505791,loss,ns,0.0001,0.0000426,2.344412938,0.019688008,pos,ns,-0.011060227,0.012493847,-0.885253871,0.376705857,neg,ns,0.423997627,0.001094934,0.000429662,2.548357913,0.011305196,pos,ns,0.315949366,Pax2,Pax2_Intergenic_upstream,19,44699034,44699083,44699034,44699035,50,-,CGGGCTTGTCAGCTTCCCCCGGCGCTGCCATTCCCGTCTGATAATCCGGC,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-57011,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
725,cg08330044,-0.0000136,0.00000623,-2.185726931,0.029583502,loss,ns,0.0000248,0.0000106,2.344338564,0.019691864,pos,ns,0.008189112,0.003098428,2.642989325,0.008635305,pos,ns,2.06372232,-0.000266046,0.000106555,-2.496800467,0.013050674,neg,ns,0.903028268,Nipbl,Nipbl_Exon,15,8322514,8322563,8322514,8322515,50,-,CGAATCATTTTTACACACATTTCTGTGATTTTTGGAAATGTTGGTTGTTC,"Exon (Nipbl-201/Nipbl, exon 30 of 47)",15,8290617,8444463,153847,2,Nipbl-201,121900,Nipbl-201,Nipbl,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,19,36,71175,ENSMUSG00000022141,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23478,cg27484199,0.0000416,0.0000192,2.167568792,0.030952405,gain,ns,0.0000763,0.0000326,2.343555975,0.019732483,pos,ns,0.053481864,0.009541836,5.60498701,4.61E-08,pos,ns,7.336731886,-0.002879515,0.000328143,-8.775186086,1.16E-16,neg,yes,0.823580369,Gm9267,Gm9267_Intergenic_upstream,12,118552818,118552867,118552818,118552819,50,-,CGCTTCAGGGATTGACTAAAACCTGTTCATGTATAGCAGCAATTTGAGAT,Distal Intergenic,12,118602677,118603080,404,1,Gm9267-201,-49859,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,20,668611,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11953,cg16018243,0.0000859,0.00000661,12.99788645,3.95E-31,gain,yes,-0.0000263,0.0000112,-2.343508705,0.019734939,neg,ns,-0.000517451,0.003290632,-0.157249709,0.875150422,neg,ns,0.057917293,0.000259118,0.000113165,2.289742582,0.022707914,pos,ns,0.146705936,Tbr1,Tbr1_Exon,2,61804111,61804160,61804111,61804112,50,-,CGCTTTGTATACTTTGCACTTGAAATCGTTACATTCAACTGAATATTTGG,"Exon (Tbr1-204/Tbr1, exon 2 of 2)",2,61802930,61804558,1629,1,Tbr1-204,1181,Psmd14-201;Psmd14-208;Psmd14-202;Tbr1-204;Tbr1-201;Tbr1-202;Tbr1-203,Psmd14;Psmd14;Psmd14;Tbr1;Tbr1;Tbr1;Tbr1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,24,27,21375,ENSMUSG00000035033,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26275,cg01741653,0.0000436,0.0000132,3.297909375,0.001087352,gain,ns,0.0000526,0.0000225,2.342947177,0.019764133,pos,ns,0.021821387,0.006577642,3.317509197,0.001016305,pos,ns,2.992975992,-0.000585169,0.000226205,-2.586902297,0.010139607,neg,ns,0.493639177,Cfap61,Cfap61_Exon,2,146045479,146045528,146045479,146045480,50,+,CGACAGATTGTCTATCCTCTGGAAAAGCTTGGCATAAACGCTCCATCAAA,"Exon (Cfap61-206/Cfap61, exon 17 of 27)",2,145934814,146215039,280226,1,Cfap61-206,110665,Cfap61-204;Cfap61-206;Cfap61-213;Cfap61-211;Cfap61-203;Cfap61-209,Cfap61;Cfap61;Cfap61;Cfap61;Cfap61;Cfap61,0;0;0;0;0;-1723,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,13,78774,ENSMUSG00000037143,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
875,cg25828009,-0.00000599,0.00000309,-1.937126179,0.053638204,loss,ns,0.0000123,0.00000526,2.342212208,0.019802401,pos,ns,0.00346838,0.001539762,2.252542661,0.024987216,pos,ns,1.602282127,-0.000134528,0.000053,-2.540555892,0.011555188,neg,ns,0.944024862,Zbtb10,Zbtb10_Exon,3,9280308,9280357,9280356,9280357,50,-,ATGAACAAGTTAAAATGCCCTCATTGTAGCTATGTAGCCAAATACAGACG,"Exon (Zbtb10-201/Zbtb10, exon 5 of 6)",3,9250602,9285333,34732,1,Zbtb10-201,29706,Zbtb10-201,Zbtb10,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,9,229055,ENSMUSG00000069114,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7519,cg24364547,-0.0000251,0.00000424,-5.914492281,8.79E-09,loss,yes,0.0000169,0.00000721,2.342132332,0.019806564,pos,ns,-0.003091818,0.002110996,-1.464625274,0.144036559,neg,ns,0.841527261,0.000139177,0.0000726,1.917114916,0.056142295,pos,ns,0.911317037,Dnajb5,Dnajb5_fiveUTR,4,42950871,42950920,42950919,42950920,50,+,GCTTGATGTTTAAAATTCAGCTGGAGCCCTTAAAACTTCGAGCGTGGACG,5' UTR,4,42949814,42959425,9612,1,Dnajb5-201,1057,Dnajb5-201;Dnajb5-203;Dnajb5-205;Dnajb5-206;Dnajb5-202;Dnajb5-207;Dnajb5-204,Dnajb5;Dnajb5;Dnajb5;Dnajb5;Dnajb5;Dnajb5;Dnajb5,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,8,56323,ENSMUSG00000036052,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13507,cg12834917,0.00000514,0.00000336,1.528210753,0.1274799,gain,ns,-0.0000134,0.00000571,-2.341975929,0.019814717,neg,ns,-0.001782544,0.001673107,-1.065409075,0.287519949,neg,ns,0.541332018,0.0000631,0.0000575,1.096244523,0.27382266,pos,ns,0.923074281,Dhx33,Dhx33_threeUTR,11,70995170,70995219,70995170,70995171,50,-,CGTGTCAACTACATATTTTATTCCTGTAATGGTTATGGAGGTTTCAGCGA,Promoter (<=1kb),11,70991715,70995188,3474,2,Dhx33-209,0,Dhx33-202;Dhx33-205;Dhx33-201;Dhx33-204;Dhx33-209;Dhx33-206;Dhx33-207;Dhx33-203;Dhx33-208,Dhx33;Dhx33;Dhx33;Dhx33;Dhx33;Dhx33;Dhx33;Dhx33;Dhx33,0;-1190;0;0;0;0;-1153;0;9218,TRUE,FALSE,TRUE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,2,216877,ENSMUSG00000040620,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17706,cg08976608,0.00000401,0.00000416,0.962397751,0.336599929,gain,ns,0.0000166,0.00000707,2.341961139,0.019815489,pos,ns,0.004740146,0.002072412,2.287260716,0.022854125,pos,ns,1.641035409,-0.00005,0.0000713,-0.702054655,0.483171848,neg,ns,0.041012884,Zic4,Zic4_Intergenic_downstream,9,91395995,91396044,91396043,91396044,50,-,AGAAAATAACGACGATAGCTATAGACACAAATAACTAAATTACCAAAACG,Distal Intergenic,9,91382410,91388044,5635,1,Zic4-202,13634,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,55,22774,ENSMUSG00000036972,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
11701,cg03275335,0.00000366,0.00000122,3.006558259,0.0028583,gain,ns,-0.00000484,0.00000207,-2.341487973,0.019840174,neg,ns,-0.000974664,0.000605299,-1.610218053,0.10836801,neg,ns,0.9650989,0.0000219,0.0000208,1.051365511,0.293909612,pos,ns,0.02443428,Gas1,Gas1_Intergenic_downstream,13,60147422,60147471,60147422,60147423,50,-,CGATACAGCTGTCCCGGCACCGTGAAAATTAAGTTATGCCCCGTGTCAGC,Distal Intergenic,13,60175787,60176941,1155,2,Gas1-202,29519,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,10,14451,ENSMUSG00000052957,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5997,cg00092621,0.00000601,0.0000131,0.457547073,0.647598382,gain,ns,0.0000523,0.0000223,2.341130322,0.019858851,pos,ns,0.014761292,0.006539744,2.257166786,0.02469346,pos,ns,1.607418062,-0.000318931,0.000224901,-1.418092291,0.157168257,neg,ns,0.831015416,Ube2d2a,Ube2d2a_Exon,18,35793483,35793532,35793483,35793484,50,+,CGGGACCCTCCAGCACAGTGTTCAGCAGGTCCTGTTGGAGATGATAGTAA,"Exon (Ube2d2a-202/Ube2d2a, exon 2 of 7)",18,35771558,35807168,35611,1,Ube2d2a-202,21925,Ube2d2a-202;Ube2d2a-204;Ube2d2a-210;Ube2d2a-201;Ube2d2a-205;Ube2d2a-206,Ube2d2a;Ube2d2a;Ube2d2a;Ube2d2a;Ube2d2a;Ube2d2a,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,3,56550,ENSMUSG00000091896,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
295,cg05446945,0.00000666,0.0000031,2.150116916,0.03231921,gain,ns,-0.0000123,0.00000526,-2.341075164,0.019861733,neg,ns,0.002109756,0.00154154,1.368602796,0.172114438,pos,ns,0.764182698,-0.0000677,0.000053,-1.277690273,0.202314634,neg,ns,0.926178741,Ccdc106,Ccdc106_Exon,7,5031819,5031868,5031819,5031820,50,+,CGCCTGTGGCAAGACCTTCCGCTACCGCTCCAACCTGCTGGAGCACCAGC,"Exon (Zfp865-201/Zfp865, exon 2 of 3)",7,5020553,5059704,39152,1,Ccdc106-207,11266,4632433K11Rik-201;Ccdc106-207;Gm44973-201;Zfp784-201;Zfp865-201;Zfp865-202;Zfp865-204;Zfp865-203,4632433K11Rik;Ccdc106;Gm44973;Zfp784;Zfp865;Zfp865;Zfp865;Zfp865,-2250;0;0;6578;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,232821,ENSMUSG00000035228,mapped to different genes,7,5031463,5031983,521,*,521,60,0.692898273,0.960368664,0.115163148,8.91E-50,CpGisland,TRUE,U10,Tr-S
16060,cg22964079,0.0000348,0.00000528,6.584589329,1.95E-10,gain,yes,-0.000021,0.00000897,-2.340936372,0.019868985,neg,ns,-0.005222892,0.002627633,-1.987679347,0.047726678,neg,ns,1.32123879,0.000138332,0.0000904,1.530831497,0.126830837,pos,ns,0.682465441,Zfp407,Zfp407_Intron,18,84329491,84329540,84329491,84329492,50,-,CGAGTGACAAGGACTCGACTTGAATAACTGCTGTGCGCAGGTTGTAATTA,"Intron (Zfp407-201/Zfp407, intron 2 of 2)",18,84128027,84558425,430399,2,Zfp407-201,228885,Zfp407-201;Zfp407-202;Zfp407-203,Zfp407;Zfp407;Zfp407,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,32,240476,ENSMUSG00000048410,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23224,cg18962968,0.0000998,0.0000078,12.79367791,2.21E-30,gain,yes,-0.000031,0.0000133,-2.340920372,0.019869822,neg,ns,-0.00381584,0.00388389,-0.982478778,0.326630179,neg,ns,0.485943691,0.000145561,0.000133567,1.089797844,0.27664861,pos,ns,0.722502282,Eri3,Eri3_Intron,4,117551717,117551766,117551717,117551718,50,-,CGGGAAGTGATTGATAAGGTTTCCTTTATAGATTCTGTGGTGCTTCACTG,"Intron (Eri3-201/Eri3, intron 1 of 8)",4,117550365,117674297,123933,1,Eri3-201,1352,Eri3-201;Eri3-205,Eri3;Eri3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,82,97,140546,ENSMUSG00000033423,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
7715,cg21222961,0.000000599,0.00000585,0.102256616,0.918619102,gain,ns,0.0000233,0.00000994,2.340820791,0.019875027,pos,ns,0.009004116,0.002913321,3.090670449,0.002178267,pos,ns,2.661888817,-0.000268179,0.000100189,-2.676736287,0.00782988,neg,ns,0.890835944,Arhgap15,Arhgap15_Intron,2,43947711,43947760,43947711,43947712,50,+,CGGTATGTTATCATGAAGATTAGAAATCATTTCCTACAGAATCATGTTTT,"Intron (Arhgap15-203/Arhgap15, intron 6 of 14)",2,43748824,44395953,647130,1,Arhgap15-203,198887,Arhgap15-203;Arhgap15-202;Arhgap15-201,Arhgap15;Arhgap15;Arhgap15,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,72,78,76117,ENSMUSG00000049744,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15187,cg18897345,4.45E-08,0.00000372,0.011971986,0.990455667,gain,ns,-0.0000148,0.00000632,-2.340523926,0.019890552,neg,ns,-0.005992762,0.001851433,-3.236824096,0.001339478,neg,ns,2.873064388,0.0000895,0.0000637,1.405766068,0.160795061,pos,ns,0.884804971,Ddx17,Ddx17_threeUTR,15,79533095,79533144,79533095,79533096,50,-,CGCGGGGAGCATGCATCAAGGGTCCGTGGCAGTGAGAAGTCCCCACACAC,3' UTR,15,79527736,79546741,19006,2,Ddx17-201,13597,Ddx17-201;Ddx17-203;Ddx17-204;Ddx17-202,Ddx17;Ddx17;Ddx17;Ddx17,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,9,14,67040,ENSMUSG00000055065,conserved gene and region,15,79532980,79533149,170,*,170,13,0.594117647,0.886126704,0.076470588,9.43E-09,CpGisland,TRUE,U10,Tr-S
20957,cg12480541,-0.00000606,0.0000018,-3.362725623,0.000868544,loss,ns,0.00000717,0.00000306,2.340522819,0.01989061,pos,ns,-0.0000509,0.000897641,-0.05672087,0.95480409,neg,ns,0.020085729,-0.0000158,0.0000309,-0.512145511,0.608913841,neg,ns,0.953446183,Tanc2,Tanc2_Exon,11,105867209,105867258,105867209,105867210,50,-,CGACTAGAAGAGAATGAAGCCATAGACCAGGACCTGCAGGCTTACATCCT,"Exon (Tanc2-202/Tanc2, exon 13 of 26)",11,105589991,105929304,339314,1,Tanc2-202,277218,Tanc2-202,Tanc2,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,15,20,77097,ENSMUSG00000053580,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14815,cg15008364,-0.00000352,0.0000034,-1.035099419,0.301429263,loss,ns,0.0000135,0.00000578,2.339995228,0.019918228,pos,ns,0.003993247,0.001692033,2.360029465,0.018892792,pos,ns,1.723703852,-0.0000832,0.0000582,-1.430119145,0.153689921,neg,ns,0.940247185,Fam172a,Fam172a_Intron,13,77868169,77868218,77868217,77868218,50,-,AACTGACTCATCAAATGAAAAATTCATCAATTAATCCTCTGACAATAACG,"Intron (Fam172a-203/Fam172a, intron 6 of 10)",13,77708690,78163655,454966,1,Fam172a-203,159479,Fam172a-203;Fam172a-201;Fam172a-202;Fam172a-209;Fam172a-205;Fam172a-207;Fam172a-208,Fam172a;Fam172a;Fam172a;Fam172a;Fam172a;Fam172a;Fam172a,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,24,68675,ENSMUSG00000064138,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8940,cg08644197,0.0000466,0.00000802,5.809301337,1.56E-08,gain,yes,-0.0000319,0.0000136,-2.339787641,0.019929104,neg,ns,0.000279984,0.003990049,0.07017064,0.944103086,pos,ns,0.024980583,-0.000158956,0.000137217,-1.158422418,0.247583329,neg,ns,0.492799174,Myod1,Myod1_Intergenic_upstream,7,46353290,46353339,46353338,46353339,50,-,AGCTGGTCACAAAGCTGGTTAATCTCCCAGAGTGCTCAGCTTAAAACCCG,Distal Intergenic,7,46376474,46379099,2626,1,Myod1-201,-23184,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,3,17927,ENSMUSG00000009471,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23566,cg00290812,-0.0000105,0.00000441,-2.386525324,0.017608028,loss,ns,-0.0000175,0.0000075,-2.339386459,0.019950138,neg,ns,-0.00281241,0.002197116,-1.28004642,0.201485856,neg,ns,0.695755435,-0.000199826,0.0000756,-2.644649142,0.008594014,neg,ns,0.782085561,Ctdspl,Ctdspl_Exon,9,119031801,119031850,119031801,119031802,50,-,CGTGGCCTCGTTCAAGTAATCCAGGATAGGCTGTGCAGGTCCCAATGGGC,"Exon (Mir26a-1-201/Mir26a-1-201, exon 1 of 1)",9,118926453,119043998,117546,1,Ctdspl-201,105348,Ctdspl-201;Ctdspl-202;Ctdspl-204;Ctdspl-203,Ctdspl;Ctdspl;Ctdspl;Ctdspl,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,7,69274,ENSMUSG00000047409,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5120,cg07428697,-0.00000777,0.00000155,-5.00174811,0.000000953,loss,yes,0.00000617,0.00000264,2.339310202,0.019954138,pos,ns,0.002420568,0.000773126,3.130884971,0.001908897,pos,ns,2.719217415,-0.0000381,0.0000266,-1.43119859,0.153380629,neg,ns,0.044227241,Ccdc71l,Ccdc71l_Exon,12,32379192,32379241,32379192,32379193,50,+,CGGAGCTCTGGAGCTTCCTCTGCAGCCTCAAGCACCAGTTCTCCCCGCAC,Promoter (<=1kb),12,32378704,32382943,4240,1,Ccdc71l-201,488,Ccdc71l-201,Ccdc71l,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,72123,ENSMUSG00000090946,conserved gene and region,12,32378735,32379193,459,*,459,65,0.745098039,1.042598546,0.1416122,1.24E-60,CpGisland,TRUE,U1,Pr-A
5965,cg24539487,-0.00000206,0.00000275,-0.749336717,0.45422252,loss,ns,-0.0000109,0.00000468,-2.339221588,0.019958787,neg,ns,0.006727043,0.001370084,4.909948477,0.00000148,pos,ns,5.830903643,-0.000172271,0.0000471,-3.656242647,0.000300563,neg,ns,0.93651348,Paip2,Paip2_Exon,18,35610959,35611008,35610959,35610960,50,+,CGGTCATTCTCATGAAGATGACAATCCATTTGCAGAGTACATGTGGATGG,Promoter (<=1kb),18,35610985,35613874,2890,1,Paip2-210,0,Paip2-201;Paip2-208;Paip2-206;Paip2-204;Paip2-209;Paip2-202;Paip2-205;Paip2-207;Paip2-203;Paip2-211;Paip2-210;Slc23a1-201,Paip2;Paip2;Paip2;Paip2;Paip2;Paip2;Paip2;Paip2;Paip2;Paip2;Paip2;Slc23a1,0;0;0;0;0;0;0;0;0;0;0;16236,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,67869,ENSMUSG00000037058,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19269,cg07836181,0.000071,0.0000108,6.550335958,2.39E-10,gain,yes,0.000043,0.0000184,2.33898818,0.019971038,pos,ns,0.018942768,0.00539109,3.513717933,0.000507678,pos,ns,3.294412033,-0.000454816,0.000185399,-2.453171185,0.014710698,neg,ns,0.246201161,Ophn1,Ophn1_fiveUTR,X,98890968,98891017,98890968,98890969,50,-,CGCTTCCCTACGGAAACTGGGGAGCAGTCAGCGCCCTAGGACTCCAGCTG,Promoter (<=1kb),20,98554277,98890985,336709,2,Ophn1-201,0,Ophn1-201;Ophn1-202;Ophn1-203;Ophn1-207;Ophn1-205;Ophn1-210;Ophn1-204;Ophn1-209,Ophn1;Ophn1;Ophn1;Ophn1;Ophn1;Ophn1;Ophn1;Ophn1,0;-187;0;0;0;-359;-584;-343,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,3,94190,ENSMUSG00000031214,conserved gene but different region,X,98890705,98891193,489,*,489,32,0.613496933,0.698571429,0.065439673,1.01E-18,CpGisland,TRUE,NA,NRS
25605,cg19424261,0.0000817,0.0000138,5.939984925,7.65E-09,gain,yes,0.0000546,0.0000234,2.338908089,0.019975244,pos,ns,0.01510991,0.006844685,2.207539247,0.028008568,pos,ns,1.552709102,-0.000182764,0.000235388,-0.776437292,0.438082834,neg,ns,0.256994218,Ebf3,Ebf3_Intron,7,137308756,137308805,137308756,137308757,50,+,CGCTGCTCTAGGGAAGAGGTTAACTGACAGAATCACAATCCAATTCTCAC,"Intron (Ebf3-204/Ebf3, intron 5 of 15)",7,137193673,137314445,120773,2,Ebf3-204,5640,Ebf3-204;Ebf3-201;Ebf3-202;Ebf3-203;Ebf3-208;Ebf3-206,Ebf3;Ebf3;Ebf3;Ebf3;Ebf3;Ebf3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,62,84,13593,ENSMUSG00000010476,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
7226,cg23839215,0.0000292,0.00000675,4.319850905,0.0000211,gain,ns,-0.0000268,0.0000115,-2.338615044,0.019990637,neg,ns,-0.003943817,0.003360281,-1.173656689,0.24143348,neg,ns,0.617202505,0.000139068,0.00011556,1.203426767,0.229729407,pos,ns,0.795971765,Gria3,Gria3_threeUTR,X,41669606,41669655,41669606,41669607,50,-,CGGGAGTAAGGTCAGTCGCTGAAGGTCTTTTTGTACTGATTAGCAATCAC,3' UTR,20,41401128,41676585,275458,1,Gria3-202,268478,Gria3-202;Gria3-201;Gria3-208;Gria3-206;Gria3-209,Gria3;Gria3;Gria3;Gria3;Gria3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,26,53623,ENSMUSG00000001986,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13880,cg08797870,-0.0000115,0.00000949,-1.208470856,0.227787203,loss,ns,0.0000377,0.0000161,2.33852155,0.01999555,pos,ns,0.005251548,0.004723538,1.111782759,0.267093043,pos,ns,0.573337424,-0.000499596,0.000162442,-3.075533351,0.002288427,neg,ns,0.538787751,Trpv1,Trpv1_Exon,11,73250776,73250825,73250824,73250825,50,-,ATGGTATTCTCCCTGGCCTTGGGCTGGACCAACATGCTCTACTACACCCG,"Exon (Trpv1-202/Trpv1, exon 11 of 16)",11,73234292,73261239,26948,1,Trpv1-202,16484,Trpv1-202;Trpv1-201;Trpv1-203;Trpv1-205;Trpv1-204,Trpv1;Trpv1;Trpv1;Trpv1;Trpv1,0;0;0;0;-1546,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,193034,ENSMUSG00000005952,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27266,cg10910781,0.00000811,0.00000447,1.814209609,0.07061206,gain,ns,0.0000178,0.0000076,2.338378615,0.020003064,pos,ns,0.003483545,0.002225164,1.565522715,0.118480592,pos,ns,0.926352783,-0.0000288,0.0000765,-0.376492749,0.706808159,neg,ns,0.921966518,Vamp4,Vamp4_Exon,1,162589485,162589534,162589533,162589534,50,+,ACAGCTTTTAGCAACAGATCCAAACAACTTCGAAGGCAAATGTGGTGGCG,"Exon (Vamp4-203/Vamp4, exon 6 of 8)",1,162570515,162599084,28570,1,Vamp4-203,18970,Vamp4-203;Vamp4-204;Vamp4-208;Vamp4-201;Vamp4-206;Vamp4-207;Vamp4-205,Vamp4;Vamp4;Vamp4;Vamp4;Vamp4;Vamp4;Vamp4,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,53330,ENSMUSG00000026696,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10146,cg17244219,0.000118899,0.0000112,10.62816991,1.06E-22,gain,yes,-0.0000444,0.000019,-2.338345001,0.020004831,neg,ns,0.013105401,0.005567968,2.353713328,0.019210955,pos,ns,1.716451054,-0.000554907,0.000191482,-2.897959624,0.00402367,neg,ns,0.541030375,Gm28308,Gm28308_Exon,6,52204215,52204264,52204215,52204216,50,+,CGTACCTGCCGGAGTGCATGCTCGCCGAGTCCCTGAATTGCTCGCTCACG,"Exon (Hoxa5-201/Hoxa5, exon 1 of 2)",6,52163359,52213339,49981,2,Gm28308-201,9075,Gm28308-201;Hoxa3-201;Hoxa3-203;Hoxa5-201;Hoxa6-201,Gm28308;Hoxa3;Hoxa3;Hoxa5;Hoxa6,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,30,103,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
8973,cg05078979,0.0000228,0.00000301,7.583776328,3.94E-13,gain,yes,-0.0000119,0.00000511,-2.338267923,0.020008884,neg,ns,0.004544088,0.001496633,3.036206141,0.002599032,pos,ns,2.585188337,-0.000143446,0.0000515,-2.787029791,0.005647483,neg,ns,0.031264699,4931429L15Rik,4931429L15Rik_Intergenic_upstream,9,46443530,46443579,46443530,46443531,50,+,CGGAACTCCCAGGAAACCTGGATGAAGTGTAATTATCTCAGCTCAATCAG,Distal Intergenic,9,46303361,46319986,16626,2,4931429L15Rik-201,-123544,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,12,22,74361,ENSMUSG00000056617,mapped to different genes,9,46443406,46443531,126,*,126,12,0.619047619,1,0.095238095,3.27E-09,CpGisland,TRUE,NA,NRS
16994,cg26625726,-0.0000158,0.00000582,-2.713258707,0.007034974,loss,ns,0.0000231,0.00000988,2.338146573,0.020015267,pos,ns,0.011183999,0.002895012,3.863196551,0.000136288,pos,ns,3.865541722,-0.000311669,0.0000996,-3.130489825,0.001911388,neg,ns,0.901267618,Atg16l1,Atg16l1_Exon,1,87781692,87781741,87781740,87781741,50,+,TCAAATGATTTTGCAAGCCGAATCTGGACTGTGGATGATTATCGATTACG,"Exon (Atg16l1-201/Atg16l1, exon 12 of 18)",1,87756013,87792428,36416,1,Atg16l1-201,25679,Atg16l1-201;Atg16l1-208;Atg16l1-202;Atg16l1-203;Atg16l1-211;Atg16l1-209;Atg16l1-204,Atg16l1;Atg16l1;Atg16l1;Atg16l1;Atg16l1;Atg16l1;Atg16l1,0;0;0;0;0;6127;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,77040,ENSMUSG00000026289,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9364,cg24076142,-0.00000141,0.00000136,-1.037228759,0.300437632,loss,ns,0.0000054,0.00000231,2.337912222,0.020027597,pos,ns,0.000522049,0.000676726,0.77143403,0.441037328,pos,ns,0.355524651,0.00000428,0.0000233,0.184064936,0.854082857,pos,ns,0.981679859,Tenm3,Tenm3_fiveUTR,8,48417039,48417088,48417087,48417088,50,+,CCCAGCTGTCCTGCAGCTGGACGGACTCGGGTGTGGTTTGCAGCTCGGCG,5' UTR,8,48227682,48674690,447009,2,Tenm3-201,257602,Tenm3-201;Tenm3-206;Tenm3-204;Tenm3-208;Tenm3-203;Tenm3-202,Tenm3;Tenm3;Tenm3;Tenm3;Tenm3;Tenm3,0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,7,39,23965,ENSMUSG00000031561,conserved gene but different region,8,48417060,48417110,51,*,51,7,0.745098039,1.0625,0.137254902,0.00000149,CpGisland,TRUE,U15,NS
18532,cg19550200,-0.000025,0.0000183,-1.369897779,0.171710185,loss,ns,0.0000725,0.000031,2.337603134,0.020043871,pos,ns,0.004004534,0.009087917,0.440643735,0.659778051,pos,ns,0.180602136,-0.00022681,0.000312533,-0.725716949,0.46855982,neg,ns,0.260552553,Hoxb8,Hoxb8_Promoter,11,96278071,96278120,96278071,96278072,50,-,CGCTATAAAAGTTTATAGCGTATAAATTTCTGAAGGTTAAGAAACTAAAC,Promoter (3-4kb),11,96281905,96285315,3411,1,Hoxb8-201,-3834,Hoxb8-201;Hoxb8-202;Hoxb8-203;Hoxb9-201;Hoxb9-202,Hoxb8;Hoxb8;Hoxb8;Hoxb9;Hoxb9,0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,6,26,15416,ENSMUSG00000056648,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
14523,cg10051720,-0.00000107,0.00000125,-0.851559189,0.395116132,loss,ns,0.00000498,0.00000213,2.337029017,0.020074129,pos,ns,0.001441306,0.000624395,2.308325438,0.021638889,pos,ns,1.664765037,-0.00005,0.0000215,-2.330805459,0.020404714,neg,ns,0.967286516,Clock,Clock_Exon,5,76240869,76240918,76240917,76240918,50,-,ACTTTGTCAGCAGCTGTCTCAGGAAGAGACTCTTCAATGCCAAGTTCTCG,"Exon (Clock-205/Clock, exon 15 of 23)",5,76209868,76304792,94925,2,Clock-205,63874,Clock-205;Clock-201;Clock-204;Clock-206,Clock;Clock;Clock;Clock,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,3,12753,ENSMUSG00000029238,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25936,cg24347671,-0.0000198,0.00000655,-3.028254689,0.002666359,loss,ns,0.000026,0.0000111,2.336936536,0.020079007,pos,ns,-0.001020646,0.003259944,-0.31308702,0.754425083,neg,ns,0.122383881,-0.0000265,0.000112109,-0.236441691,0.8132461,neg,ns,0.871578824,Unc5c,Unc5c_Intron,3,141475880,141475929,141475928,141475929,50,-,TATAGAAAGGAGCCATTTCTGCTAATAGCCAGTAACTGCACATAACCCCG,"Intron (Unc5c-202/Unc5c, intron 1 of 15)",3,141465216,141834924,369709,1,Unc5c-202,10664,Unc5c-202;Unc5c-201;Unc5c-208;Unc5c-206;Unc5c-207;Unc5c-204;Unc5c-205,Unc5c;Unc5c;Unc5c;Unc5c;Unc5c;Unc5c;Unc5c,0;0;10281;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,4,22253,ENSMUSG00000059921,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20566,cg05569803,-0.0000119,0.00000664,-1.796428715,0.073399839,loss,ns,0.0000263,0.0000113,2.336915511,0.020080116,pos,ns,-0.003610577,0.003302941,-1.093140215,0.275180972,neg,ns,0.560381599,0.0000577,0.000113588,0.507689738,0.612031959,pos,ns,0.75651712,Syt6,Syt6_threeUTR,3,103587573,103587622,103587573,103587574,50,+,CGGGTGCACCGCAAGACCCTGAACCCCACCTTTGATGAGAACTTCCACTT,3' UTR,3,103575231,103630946,55716,1,Syt6-205,12342,Syt6-205;Syt6-201;Syt6-206;Syt6-207;Syt6-208;Syt6-210;Syt6-209;Syt6-202;Syt6-203;Syt6-204,Syt6;Syt6;Syt6;Syt6;Syt6;Syt6;Syt6;Syt6;Syt6;Syt6,0;0;0;0;0;0;11492;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,4,54524,ENSMUSG00000027849,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18943,cg09541007,-0.00000124,0.00000147,-0.844629402,0.398969149,loss,ns,0.00000585,0.0000025,2.336854359,0.020083342,pos,ns,0.001789757,0.000733209,2.44099263,0.015206285,pos,ns,1.817976862,-0.0000683,0.0000252,-2.70946538,0.007114006,neg,ns,0.972462,Mitf,Mitf_Exon,6,97993290,97993339,97993290,97993291,50,+,CGGGGAGCAGCGCACCCAACAGCCCCATGGCTATGCTTACGCTTAACTCC,"Exon (Mitf-207/Mitf, exon 3 of 10)",6,97807052,98018593,211542,1,Mitf-207,186238,Mitf-207;Mitf-202;Mitf-203;Mitf-204;Mitf-201;Mitf-205;Mitf-208,Mitf;Mitf;Mitf;Mitf;Mitf;Mitf;Mitf,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,16,17342,ENSMUSG00000035158,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26950,cg05297162,-0.00000509,0.000012,-0.42621972,0.670243547,loss,ns,-0.0000474,0.0000203,-2.336794379,0.020086507,neg,ns,-0.027371168,0.005948761,-4.601153995,0.00000613,neg,ns,5.212321694,0.000710457,0.000204577,3.472801406,0.000588295,pos,ns,0.691183408,Ski,Ski_Intergenic_upstream,4,155235402,155235451,155235450,155235451,50,+,TGGGTTTGCTATTTTTACCCACCCTGAGCCTTCCGGTCTCCATGGCGACG,Distal Intergenic,4,155154075,155222592,68518,2,Ski-201,-12810,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,8,20481,ENSMUSG00000029050,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
11235,cg13824077,0.0000806,0.00000986,8.172034028,7.81E-15,gain,yes,0.0000392,0.0000168,2.336665077,0.020093331,pos,ns,0.022419589,0.004909276,4.566780583,0.00000715,pos,ns,5.145438847,-0.000250281,0.00016883,-1.482449265,0.139236628,neg,ns,0.220278928,Nr4a2,Nr4a2_Intron,2,57109287,57109336,57109335,57109336,50,+,CACTTAATGAGGTTCTCTAAAATATATAACCCGTGAAATTGCTAACCCCG,"Intron (Nr4a2-201/Nr4a2, intron 5 of 7)",2,57106830,57115038,8209,2,Nr4a2-201,5702,Nr4a2-201;Nr4a2-203;Nr4a2-206;Nr4a2-202;Nr4a2-205;Nr4a2-204,Nr4a2;Nr4a2;Nr4a2;Nr4a2;Nr4a2;Nr4a2,0;0;0;0;0;5037,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,25,18227,ENSMUSG00000026826,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
7339,cg04702241,-0.00000435,0.00000298,-1.46075689,0.145094943,loss,ns,-0.0000118,0.00000506,-2.336534872,0.020100205,neg,ns,-0.006321304,0.001480991,-4.268292568,0.0000262,neg,ns,4.581546615,0.000153142,0.0000509,3.006847578,0.002855659,pos,ns,0.94437703,Afg1l,Afg1l_threeUTR,10,42339812,42339861,42339860,42339861,50,-,CCTGGATACTTACTCTCTCACACAGCTCTTCAAATGTGCAGTCGGCAACG,3' UTR,10,42312585,42478280,165696,2,Afg1l-204,138419,Afg1l-204;Afg1l-201;Afg1l-202;Afg1l-203,Afg1l;Afg1l;Afg1l;Afg1l,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,6,215951,ENSMUSG00000038302,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11521,cg13634725,0.0000932,0.0000161,5.792115389,1.71E-08,gain,yes,-0.0000638,0.0000273,-2.336216631,0.020117013,neg,ns,0.050449022,0.008004687,6.30243492,1.01E-09,pos,ns,8.997740681,-0.001209569,0.000275281,-4.393948771,0.0000153,neg,ns,0.675764617,Mtss1,Mtss1_threeUTR,15,58941539,58941588,58941539,58941540,50,-,CGTTTAAAAACTAAACAAGTGAAAAGCTGTACCAAGGTACAGTTACATCC,3' UTR,15,58941234,59081989,140756,2,Mtss1-201,140401,Gm49356-201;Mtss1-201;Mtss1-202;Mtss1-204;Mtss1-205;Mtss1-206;Mtss1-210;Ndufb9-201,Gm49356;Mtss1;Mtss1;Mtss1;Mtss1;Mtss1;Mtss1;Ndufb9,0;0;0;0;0;0;0;7783,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,4,211401,ENSMUSG00000022353,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3288,cg16708405,-0.000002,0.00000188,-1.062715813,0.288737996,loss,ns,0.00000746,0.00000319,2.336171765,0.020119384,pos,ns,0.002471624,0.000935049,2.643310277,0.008627307,pos,ns,2.064124757,-0.0000606,0.0000322,-1.884885104,0.060380591,neg,ns,0.95206866,Usp34,Usp34_Exon,11,23474229,23474278,23474277,23474278,50,-,ATTTAAGTGCAACCATTTTATCATCTTTAACCTTCAGGGCAAAGATGACG,"Exon (Usp34-208/Usp34, exon 75 of 80)",11,23306895,23490560,183666,1,Usp34-208,167334,Usp34-208;Usp34-205;Usp34-202,Usp34;Usp34;Usp34,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,13,14,17847,ENSMUSG00000056342,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24411,cg10264911,-0.000019,0.00000648,-2.937924859,0.003551981,loss,ns,0.0000257,0.000011,2.335953455,0.020130923,pos,ns,0.00020668,0.003223302,0.064120711,0.948915438,pos,ns,0.022772488,0.000155133,0.000110849,1.399495878,0.162664183,pos,ns,0.714607496,Fbn1,Fbn1_Exon,2,125477538,125477587,125477586,125477587,50,-,CAAGTGCACATATTTGGCCTCGAACAAAATCCATCCCCACAGGAATGCCG,"Exon (Fbn1-201/Fbn1, exon 4 of 66)",2,125300594,125506385,205792,2,Fbn1-201,28798,Fbn1-201;Fbn1-202;Fbn1-203,Fbn1;Fbn1;Fbn1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,14118,ENSMUSG00000027204,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27445,cg08873615,0.0000127,0.00000611,2.078995662,0.038439704,gain,ns,-0.0000242,0.0000104,-2.335743921,0.020142004,neg,ns,-0.005471584,0.003038604,-1.800690171,0.072723596,neg,ns,1.138324655,-0.0000741,0.000104497,-0.709092625,0.478799933,neg,ns,0.842465992,Adnp,Adnp_fiveUTR,2,168189343,168189392,168189343,168189344,50,-,CGGGCTTTTCTTAAACTGCCAAGATTGTTGACAGGAAGTTGGAACATAGT,5' UTR,2,168180986,168206922,25937,2,Adnp-201,17530,Adnp-201;Adnp-202;Adnp-204;Gm20716-201,Adnp;Adnp;Adnp;Gm20716,0;0;0;0,TRUE,FALSE,FALSE,TRUE,TRUE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,3,11538,ENSMUSG00000051149,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18684,cg24558392,0.000028,0.00000793,3.535275062,0.000469486,gain,ns,0.0000315,0.0000135,2.335431542,0.020158533,pos,ns,0.015094478,0.003946094,3.825169283,0.00015802,pos,ns,3.80128776,-0.000330362,0.000135706,-2.434397586,0.01548078,neg,ns,0.176473433,Skap1,Skap1_Intron,11,96736314,96736363,96736362,96736363,50,+,AATCTTGTCCCAATTAATTTCACAGAATTAATCTCACAGAAGCAAACTCG,"Intron (Skap1-204/Skap1, intron 11 of 12)",11,96464593,96758941,294349,1,Skap1-204,271721,Skap1-204;Skap1-203;Skap1-209;Skap1-201,Skap1;Skap1;Skap1;Skap1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,40,46,78473,ENSMUSG00000057058,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
15876,cg03265102,0.0000179,0.00001,1.779411491,0.076151983,gain,ns,0.0000398,0.0000171,2.33521889,0.020169792,pos,ns,0.000320213,0.004997604,0.064073363,0.948953107,pos,ns,0.022755248,0.000126486,0.000171867,0.735950233,0.462317475,pos,ns,0.31905313,Gm6411,Gm6411_Exon,13,83739572,83739621,83739620,83739621,50,+,TGTTCTGTCTTACTCTGCGCCTAGCATTGGAAATGAAAGTGACATTTACG,"Exon (C130071C03Rik-201/C130071C03Rik-201, exon 4 of 4)",13,83761132,83762335,1204,2,Gm6411-201,22714,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,36,623241,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
9519,cg04867531,-0.000000828,0.00000219,-0.378863457,0.705048612,loss,ns,0.00000867,0.00000371,2.335021443,0.020180251,pos,ns,0.002002796,0.001087599,1.84148482,0.06650578,pos,ns,1.177140608,-0.0000463,0.0000374,-1.238067162,0.216627952,neg,ns,0.943633214,Ap5m1,Ap5m1_threeUTR,14,49088609,49088658,49088657,49088658,50,-,AGAAGAAACAGCTGCATTTCAAAGGGATTCCGATTCCAGAAGCTTAATCG,3' UTR,14,49066495,49090879,24385,1,Ap5m1-201,22114,Ap5m1-201;Ap5m1-204;Ap5m1-206;Ap5m1-203;Ap5m1-202,Ap5m1;Ap5m1;Ap5m1;Ap5m1;Ap5m1,0;22078;22067;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,7,7,74385,ENSMUSG00000036291,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25820,cg19783210,0.00000218,0.0000106,0.205781008,0.837097047,gain,ns,0.000042,0.000018,2.334886156,0.02018742,pos,ns,0.009149384,0.005267707,1.736881911,0.083401337,pos,ns,1.078826989,-0.000207693,0.000181156,-1.146489205,0.252476954,neg,ns,0.181886966,Uncx,Uncx_Intergenic_downstream,5,139554229,139554278,139554229,139554230,50,-,CGACAGAATGCTGACCAGAAAGAAATGAAATTAATCTCTGACCCCGTCTG,Distal Intergenic,5,139543898,139545268,1371,1,Uncx-202,10380,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,59,88,22255,ENSMUSG00000029546,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
9764,cg12671219,-0.00000788,0.0000039,-2.020781738,0.044161773,loss,ns,0.0000155,0.00000662,2.334703393,0.020197109,pos,ns,0.005170269,0.00194041,2.664523328,0.008113204,pos,ns,2.090807618,-0.000162809,0.0000667,-2.439804438,0.015255419,neg,ns,0.920383268,Gm45386,Gm45386_Intergenic_upstream,8,50708582,50708631,50708582,50708583,50,-,CGGCAGGAAACCTGAAATGAAGGCATTATCCAACACTTCATGCTCCTTAG,Distal Intergenic,8,51137630,51137847,218,1,Gm45386-201,-429048,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17968,cg04221597,-0.00000337,0.000017,-0.198461039,0.842814453,loss,ns,-0.0000673,0.0000288,-2.334258361,0.020220717,neg,ns,-0.022488275,0.008451981,-2.660710623,0.008203523,neg,ns,2.085999578,0.000558735,0.000290663,1.922279414,0.055486855,pos,ns,0.753464189,Gm31663,Gm31663_Intron,7,92985489,92985538,92985489,92985490,50,-,CGGTTTAGGTGCATTCTATGAAAAGGGAGCTTTTAATGACAAAACTAATG,"Intron (Gm31663-202/Gm31663, intron 4 of 6)",7,92979876,93006513,26638,1,Gm31663-202,5613,Gm31663-202;Gm31663-201,Gm31663;Gm31663,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,3,102633966,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10392,cg21602557,0.000000153,0.000000455,0.33680985,0.736488148,gain,ns,-0.0000018,0.000000773,-2.333757818,0.0202473,neg,ns,-0.0000224,0.000226466,-0.098873038,0.921302979,neg,ns,0.035597524,-0.0000113,0.00000779,-1.447331959,0.148814451,neg,ns,0.011388508,Ext1,Ext1_Exon,15,53344908,53344957,53344956,53344957,50,+,GCACGCCTGGCTGGGGTCCGAGGTGTAGAACCTGGAGCCCTCGATGGCCG,"Exon (Ext1-201/Ext1, exon 1 of 11)",15,53064038,53346159,282122,2,Ext1-201,1202,Ext1-201;Ext1-203,Ext1;Ext1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,16,14042,ENSMUSG00000061731,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21196,cg21602520,-0.000012,0.0000137,-0.880222497,0.379420649,loss,ns,0.0000542,0.0000232,2.333634836,0.020253835,pos,ns,0.0081208,0.006802488,1.193798498,0.233469531,pos,ns,0.631769789,0.000305653,0.000233937,1.306561928,0.19233002,pos,ns,0.648960909,Bcl2,Bcl2_Exon,1,106712370,106712419,106712370,106712371,50,+,CGATGTTGTCCACCAGGGGCGACATCTCCCGGTTGACGCTCTCCACACAC,"Exon (Bcl2-201/Bcl2, exon 1 of 2)",1,106538178,106714274,176097,2,Bcl2-201,1855,Bcl2-201;Bcl2-202,Bcl2;Bcl2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,12043,ENSMUSG00000057329,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18731,cg13258110,0.0000544,0.0000107,5.101634909,0.000000588,gain,yes,-0.0000422,0.0000181,-2.333427813,0.020264842,neg,ns,0.006698469,0.005303069,1.263130688,0.207491412,pos,ns,0.682999874,-0.000151861,0.000182372,-0.832699057,0.405655525,neg,ns,0.330054564,Sp2,Sp2_Intergenic_upstream,11,96997463,96997512,96997511,96997512,50,-,TGTGGTGTCTGGGGCCCGGGGCCTCTCATTTGTGGGGACGTGCTGTGGCG,Distal Intergenic,11,96954219,96982959,28741,2,Sp2-201,-14553,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,78912,ENSMUSG00000018678,mapped to different genes,11,96997479,96997682,204,*,204,19,0.705882353,0.791828396,0.093137255,3.36E-14,CpGisland,TRUE,U3,Pr-B
18352,cg20421508,0.0000128,0.00000224,5.712224089,2.62E-08,gain,yes,-0.00000888,0.00000381,-2.332851991,0.020295483,neg,ns,0.0000536,0.001115293,0.048016017,0.961734397,pos,ns,0.016944851,-0.0000196,0.0000384,-0.510809512,0.609848018,neg,ns,0.05474185,Otp,Otp_Promoter,13,94869079,94869128,94869127,94869128,50,-,TAATCGAGCCCACATGGAGGGCAGCAGCACTAATTACGGCGGGGGATGCG,Promoter (6-7kb),13,94875602,94885130,9529,1,Otp-201,-6523,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,27,34,18420,ENSMUSG00000021685,conserved gene and region,13,94869063,94869234,172,*,172,30,0.819767442,1.155913979,0.174418605,1.73E-31,CpGisland,TRUE,U3,Pr-B
27112,cg17771761,-0.0000194,0.00000636,-3.055824253,0.002439546,loss,ns,0.0000252,0.0000108,2.332835524,0.02029636,pos,ns,0.005407704,0.003167001,1.707515587,0.088727467,pos,ns,1.051941915,-0.0002604,0.000108913,-2.390897979,0.017403566,neg,ns,0.852190431,Ralgapb,Ralgapb_Exon,2,158437365,158437414,158437365,158437366,50,-,CGGAGACCAAAGGTTAACAGCATCTTGAATCTCTTTGGATCATGGTTATT,"Exon (Ralgapb-203/Ralgapb, exon 9 of 30)",2,158409848,158499253,89406,1,Ralgapb-203,27517,Ralgapb-203;Ralgapb-201;Ralgapb-205;Ralgapb-209;Ralgapb-202;Ralgapb-204,Ralgapb;Ralgapb;Ralgapb;Ralgapb;Ralgapb;Ralgapb,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,6,228850,ENSMUSG00000027652,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17226,cg12693893,0.0000177,0.0000027,6.572908314,2.09E-10,gain,yes,0.0000107,0.00000458,2.332332324,0.020323171,pos,ns,0.005381165,0.001342718,4.007665552,0.0000769,pos,ns,4.114301459,-0.0000206,0.0000462,-0.445511718,0.656260951,neg,ns,0.0502154,Nog,Nog_Intergenic_downstream,11,89298680,89298729,89298680,89298681,50,+,CGCTCTCCGAGTTTTGGCTGCCCGCCCAGCTGGGAATAACTCTCTTCGCA,Downstream (1-2kb),11,89300638,89302332,1695,2,Nog-201,3603,Nog-201,Nog,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,16,36,18121,ENSMUSG00000048616,conserved gene and region,11,89298338,89298738,401,*,401,43,0.688279302,0.916254849,0.10723192,2.38E-34,CpGisland,TRUE,U3,Pr-B
22864,cg23534420,0.00000743,0.00000366,2.02717748,0.043499684,gain,ns,-0.0000145,0.00000622,-2.332128331,0.020334049,neg,ns,0.003616855,0.001823194,1.983801953,0.048159729,pos,ns,1.317315969,-0.000167796,0.0000627,-2.676191608,0.007842323,neg,ns,0.931677625,Meis2,Meis2_Intron,2,116043196,116043245,116043244,116043245,50,-,TTTGTTTAATCACCTTTTGGATCTTTGCCAGATGGTCTCTATTGAGAGCG,"Intron (Meis2-201/Meis2, intron 7 of 11)",2,115863064,116065047,201984,2,Meis2-201,21802,Meis2-201;Meis2-203;Meis2-205;Meis2-206;Meis2-204;Meis2-202;Meis2-216;Meis2-217;Meis2-213;Meis2-211,Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,45,97,17536,ENSMUSG00000027210,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26739,cg24978754,0.0000165,0.00000445,3.701430855,0.000253652,gain,ns,-0.0000176,0.00000756,-2.332086085,0.020336302,neg,ns,0.003622177,0.0022154,1.634999018,0.103064226,pos,ns,0.986892054,-0.000185661,0.0000762,-2.436891835,0.015376455,neg,ns,0.90971458,Huwe1,Huwe1_Exon,X,151923517,151923566,151923565,151923566,50,+,GCTGTTCGGCAGCTGGAGGCTGAGGCTGATGCCATTATACAAATGGTACG,"Exon (Huwe1-201/Huwe1, exon 72 of 83)",20,151803327,151935417,132091,1,Huwe1-201,120190,Huwe1-201;Huwe1-202;Huwe1-209;Huwe1-205;Huwe1-213,Huwe1;Huwe1;Huwe1;Huwe1;Huwe1,0;0;2235;0;-692,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,22,28,59026,ENSMUSG00000025261,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1454,cg13971339,0.00003,0.0000112,2.673568746,0.007902494,gain,ns,0.0000445,0.0000191,2.332015378,0.020340074,pos,ns,0.020530451,0.005591482,3.671736917,0.000283627,pos,ns,3.547251969,-0.000634998,0.000192291,-3.302281396,0.001071115,neg,ns,0.2746113,Cdh6,Cdh6_Exon,15,13034589,13034638,13034589,13034590,50,+,CGTCGTTGTAACTGACAATGTTATCTCTGATGTCCTCTTTGGAAATGATC,"Exon (Cdh6-201/Cdh6, exon 12 of 12)",15,13028701,13173675,144975,2,Cdh6-201,139037,Cdh6-201,Cdh6,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,5,12563,ENSMUSG00000039385,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7159,cg25719814,0.0000182,0.0000112,1.626746896,0.104806873,gain,ns,0.0000444,0.000019,2.331642728,0.020359964,pos,ns,-0.000903966,0.00557449,-0.162161109,0.87128463,neg,ns,0.059839947,-0.000169247,0.000191706,-0.882845019,0.378004102,neg,ns,0.836494857,Fam219a,Fam219a_Exon,4,41524327,41524376,41524375,41524376,50,-,GGAGCGGGGATGGTTTGTAATTCATGGCTACTGACTCACCCTCCCGGGCG,"Exon (Fam219a-201/Fam219a, exon 2 of 6)",4,41517691,41569509,51819,2,Fam219a-201,45133,Fam219a-201;Fam219a-202;Fam219a-203;Fam219a-204;Fam219a-205,Fam219a;Fam219a;Fam219a;Fam219a;Fam219a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,7,71901,ENSMUSG00000028439,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13519,cg21804097,0.000013,0.00000892,1.458979973,0.145583106,gain,ns,0.0000353,0.0000152,2.331270962,0.020379823,pos,ns,0.014301787,0.004439377,3.221575442,0.001410366,pos,ns,2.850668156,-0.00000885,0.00015267,-0.057975108,0.953805808,neg,ns,0.264147849,Gm34783,Gm34783_Intron,7,71023939,71023988,71023939,71023940,50,-,CGAAATGAATCCTGCTCCTCTGCATTATTAAGTTGTCAGGCGGGCTGATG,"Intron (Gm42397-206/Gm42397-206, intron 3 of 3)",7,70912518,70912820,303,2,Gm34783-201,-111168,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,5,102638149,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6479,cg19379020,-0.0000225,0.00000803,-2.80733919,0.005311747,loss,ns,0.0000318,0.0000136,2.331161724,0.020385662,pos,ns,0.005849336,0.003996457,1.46363065,0.144308117,pos,ns,0.840709239,-0.000234157,0.000137438,-1.703729862,0.089433692,neg,ns,0.683920385,Inpp4a,Inpp4a_Exon,1,37408137,37408186,37408137,37408138,50,+,CGAAGAGAAAATACAATGAAGAATGTTGGAAGTCGCAAATATGCATTTAA,"Exon (Inpp4a-201/Inpp4a, exon 26 of 26)",1,37299891,37410736,110846,1,Inpp4a-201,108246,Inpp4a-201;Inpp4a-205;Inpp4a-207;Inpp4a-206;Inpp4a-213;Inpp4a-208;Inpp4a-202;Inpp4a-203;Inpp4a-211,Inpp4a;Inpp4a;Inpp4a;Inpp4a;Inpp4a;Inpp4a;Inpp4a;Inpp4a;Inpp4a,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,9,269180,ENSMUSG00000026113,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12460,cg23688276,-0.000000814,0.00000451,-0.180305962,0.857030186,loss,ns,-0.0000179,0.00000767,-2.331134556,0.020387114,neg,ns,-0.008749765,0.002246404,-3.895008529,0.000120313,neg,ns,3.919686756,0.000163873,0.0000773,2.12122874,0.034695923,pos,ns,0.852136429,Gm13577,Gm13577_Intergenic_downstream,2,64394614,64394663,64394662,64394663,50,-,TCCCTGCCTCAGTACAAAGTTACTCTGTGTCCTTCACTTCTCTGGTTACG,Distal Intergenic,2,64474745,64474949,205,2,Gm13577-201,80335,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,17,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20744,cg18404996,-0.0000125,0.00000353,-3.53047103,0.000477757,loss,ns,0.000014,0.000006,2.330962226,0.020396329,pos,ns,0.004952511,0.001757718,2.817579435,0.005149428,pos,ns,2.288241041,-0.000125093,0.0000604,-2.069430762,0.039333958,neg,ns,0.923507232,C8a,C8a_Intron,4,104843414,104843463,104843414,104843415,50,+,CGGTCTCCAGCAGATGAGGTGATGATTAGCACATTTCCATATTTATAGAA,"Intron (C8a-204/C8a, intron 2 of 2)",4,104815679,104856523,40845,2,C8a-204,13060,C8a-204;C8a-203;C8a-201;C8a-202,C8a;C8a;C8a;C8a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,230558,ENSMUSG00000035031,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18536,cg13803050,-0.000000164,0.00000823,-0.019960478,0.984087741,loss,ns,0.0000326,0.000014,2.330680166,0.020411418,pos,ns,0.008424642,0.004095434,2.05708185,0.040514696,pos,ns,1.392387415,-0.000141718,0.000140842,-1.006220736,0.315094154,neg,ns,0.140044443,Hoxb8,Hoxb8_fiveUTR,11,96281926,96281975,96281926,96281927,50,+,CGTTTGTTTGAAAATACGTTTAGGAGAGGAAGCTGTATGATTTGATAACT,Promoter (<=1kb),11,96281905,96285315,3411,1,Hoxb8-201,21,Hoxb7-201;Hoxb8-201;Hoxb8-202;Hoxb8-203,Hoxb7;Hoxb8;Hoxb8;Hoxb8,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,11,26,15416,ENSMUSG00000056648,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
4362,cg00942997,0.0000868,0.00000781,11.1125497,2.26E-24,gain,yes,-0.0000309,0.0000133,-2.330670755,0.020411922,neg,ns,-0.00293842,0.00388616,-0.756124179,0.450148939,neg,ns,0.346643769,0.000139696,0.000133645,1.045282309,0.296706883,pos,ns,0.719634734,Wnt5a,Wnt5a_Exon,14,28522857,28522906,28522857,28522858,50,+,CGCTGCCACTGCAAGTTCCACTGGTGCTGCTACGTCAAGTGCAAGAAGTG,"Exon (Wnt5a-201/Wnt5a, exon 5 of 5)",14,28504750,28527448,22699,1,Wnt5a-201,18107,Wnt5a-201;Wnt5a-203;Wnt5a-202,Wnt5a;Wnt5a;Wnt5a,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,8,22418,ENSMUSG00000021994,conserved gene and region,14,28522549,28522858,310,*,310,23,0.629032258,0.755776977,0.074193548,7.83E-15,CpGisland,TRUE,U15,NS
11884,cg18065426,-0.000038,0.00000607,-6.258209975,1.29E-09,loss,yes,0.000024,0.0000103,2.330000048,0.020447843,pos,ns,0.001365049,0.003019634,0.452057799,0.651543487,pos,ns,0.186056592,-0.000160589,0.000103845,-1.546432867,0.123020287,neg,ns,0.890622853,Gm6174,Gm6174_Intergenic_downstream,17,61439266,61439315,61439266,61439267,50,-,CGAGGCAGAGCTTAAAATAAGCAAATAGGTCAAATGTTCAACTTACCTGC,Distal Intergenic,17,61397310,61398246,937,1,Gm6174-201,42005,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,620725,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25209,cg09929978,0.00000308,0.00000317,0.970325419,0.332640771,gain,ns,0.0000126,0.00000539,2.32977064,0.020460142,pos,ns,0.005383951,0.001578443,3.410925897,0.000733234,pos,ns,3.134757593,-0.0000986,0.0000543,-1.816024953,0.070332417,neg,ns,0.909851505,Arid1a,Arid1a_Exon,4,133722983,133723032,133722983,133722984,50,-,CGAGTATGGGTTAGTCCCGCCATATGGCTGAGGTCTCATCTTGCCCATCT,"Exon (Arid1a-202/Arid1a, exon 2 of 20)",4,133679008,133753611,74604,2,Arid1a-202,30579,Arid1a-202;Arid1a-205;Arid1a-201;Arid1a-203;Arid1a-206;Arid1a-204,Arid1a;Arid1a;Arid1a;Arid1a;Arid1a;Arid1a,0;0;0;0;-2207;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,13,31,93760,ENSMUSG00000007880,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25578,cg14812840,-0.0000111,0.0000136,-0.817315803,0.414375675,loss,ns,0.0000538,0.0000231,2.329498773,0.020474726,pos,ns,0.003396121,0.006764855,0.502024124,0.61600693,pos,ns,0.210414402,0.0000054,0.000232643,0.02320239,0.981503759,pos,ns,0.400424158,Ebf3,Ebf3_Intron,7,137255042,137255091,137255042,137255043,50,-,CGTTGCTGTATTAAATTTTCATATGAAAAGAGGACTTTGCACATGCAGCC,"Intron (Ebf3-204/Ebf3, intron 6 of 15)",7,137193673,137314445,120773,2,Ebf3-204,59354,Ebf3-204;Ebf3-201;Ebf3-202;Ebf3-203;Ebf3-208;Ebf3-205,Ebf3;Ebf3;Ebf3;Ebf3;Ebf3;Ebf3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,62,84,13593,ENSMUSG00000010476,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
8053,cg19107290,0.0000845,0.00000694,12.1888701,3.48E-28,gain,yes,-0.0000274,0.0000118,-2.329198171,0.020490862,neg,ns,0.007829899,0.003452115,2.268145659,0.024008019,pos,ns,1.61964367,-0.000131826,0.000118718,-1.110415482,0.267680584,neg,ns,0.141142189,Pax5,Pax5_fiveUTR,4,44703395,44703444,44703443,44703444,50,+,GCTTACAGTGTATTTCCATCGGGGCGCTCCAGACTGCAGGCCGGCCCACG,Promoter (<=1kb),4,44679454,44703413,23960,2,Pax5-216,0,Pax5-201;Pax5-202;Pax5-203;Pax5-204;Pax5-205;Pax5-207;Pax5-206;Pax5-209;Pax5-210;Pax5-212;Pax5-213;Pax5-214;Pax5-215;Pax5-208;Pax5-216;Pax5-217;Pax5-218;Pax5-219,Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,45,18507,ENSMUSG00000014030,conserved gene but different region,4,44703085,44703505,421,*,421,37,0.617577197,0.926154944,0.087885986,3.03E-26,CpGisland,TRUE,U3,Pr-B
10586,cg16733092,-0.00000923,0.00000318,-2.901406361,0.003980845,loss,ns,-0.0000126,0.0000054,-2.329168581,0.020492451,neg,ns,0.0000973,0.00158274,0.061505921,0.950995934,pos,ns,0.02182134,-0.000112655,0.0000544,-2.069713509,0.03930727,neg,ns,0.917473486,Idh3a,Idh3a_threeUTR,9,54596148,54596197,54596148,54596149,50,-,CGAGAGAACACAGAAGGAGAATACAGTGGAATTGAGCATGTGGTATGTTC,3' UTR,9,54586334,54604661,18328,1,Idh3a-205,9814,Idh3a-205;Idh3a-204;Idh3a-202;Idh3a-201;Idh3a-203,Idh3a;Idh3a;Idh3a;Idh3a;Idh3a,0;0;9638;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,1,67834,ENSMUSG00000032279,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6500,cg03729250,-0.00000438,0.00000333,-1.314882093,0.189521385,loss,ns,0.0000132,0.00000566,2.329158207,0.020493008,pos,ns,0.003616656,0.001658745,2.180356405,0.029982819,pos,ns,1.523127539,-0.000098,0.000057,-1.718788411,0.086651237,neg,ns,0.947563758,Msantd2,Msantd2_Exon,9,37517175,37517224,37517223,37517224,50,-,AAGTACAGCTTTAAAGGAATAACAAAAGACTTTGTGTCTTAGACCCTTCG,"Exon (Msantd2-209/Msantd2, exon 2 of 4)",9,37489021,37524150,35130,1,Msantd2-209,28154,Msantd2-209;Msantd2-204;Msantd2-210;Msantd2-201;Msantd2-202;Msantd2-208;Msantd2-203;Msantd2-206;Msantd2-207,Msantd2;Msantd2;Msantd2;Msantd2;Msantd2;Msantd2;Msantd2;Msantd2;Msantd2,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,8,235184,ENSMUSG00000042138,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
15222,cg09029989,-0.00000384,0.00000562,-0.683436332,0.494841655,loss,ns,0.0000222,0.00000955,2.328976307,0.020502779,pos,ns,0.008348128,0.002797881,2.983732756,0.003073843,pos,ns,2.512318265,-0.000214827,0.0000962,-2.232688314,0.026283319,neg,ns,0.91340354,Anapc10,Anapc10_Intron,8,79748350,79748399,79748398,79748399,50,+,GTATTGTAGTTGGCTCTCCACACTTGTCAGGGTTAGTGTTCAACCATTCG,"Intron (Anapc10-201/Anapc10, intron 4 of 4)",8,79711820,79777320,65501,1,Anapc10-201,36530,Anapc10-201;Anapc10-203,Anapc10;Anapc10,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,68999,ENSMUSG00000036977,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12311,cg26383109,0.0000238,0.0000203,1.173815245,0.241370047,gain,ns,0.0000802,0.0000344,2.328819766,0.02051119,pos,ns,0.024797665,0.010087843,2.458173105,0.014511332,pos,ns,1.838292713,-0.000605407,0.00034692,-1.745090122,0.081960069,neg,ns,0.695854399,Gm18541,Gm18541_Intergenic_upstream,9,63881102,63881151,63881150,63881151,50,-,TAAATGCCTCCACTTAATGCATTATATCCATATGCATGAAATTGCCTCCG,Distal Intergenic,9,63898265,63898802,538,1,Gm18541-201,-17163,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,13,100417338,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3870,cg21129179,-0.00000649,0.00000318,-2.038606789,0.042337495,loss,ns,0.0000126,0.00000541,2.328608113,0.020522568,pos,ns,0.002437612,0.001584433,1.538475908,0.124952351,pos,ns,0.903255567,-0.000189876,0.0000545,-3.484697,0.000563701,neg,ns,0.928515103,5730522E02Rik,5730522E02Rik_Intron,11,25659807,25659856,25659855,25659856,50,-,TCTTTTTTAAATTACTTTATTAACCTTTCCTCCTAGCACAGAAGTGCCCG,"Intron (5730522E02Rik-202/5730522E02Rik, intron 2 of 5)",11,25617668,26210569,592902,2,5730522E02Rik-202,550713,5730522E02Rik-202;5730522E02Rik-201;5730522E02Rik-208,5730522E02Rik;5730522E02Rik;5730522E02Rik,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,90,70626,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10652,cg13550531,0.0000197,0.00000529,3.713492796,0.00024235,gain,ns,-0.0000209,0.00000899,-2.328534103,0.020526548,neg,ns,0.000283781,0.002634476,0.107718207,0.914288908,pos,ns,0.038916549,-0.0000353,0.0000906,-0.38949537,0.697177172,neg,ns,0.838618415,Cfl2,Cfl2_Exon,12,54861533,54861582,54861581,54861582,50,+,TAAATACTAGGTCTTCTTTCTTAGACTCTTTTGTTTCGTATGTGGCATCG,"Exon (Cfl2-201/Cfl2, exon 2 of 4)",12,54858809,54862798,3990,2,Cfl2-206,1216,Cfl2-206;Cfl2-201;Cfl2-203;Cfl2-205;Cfl2-202;Cfl2-204,Cfl2;Cfl2;Cfl2;Cfl2;Cfl2;Cfl2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,3,12632,ENSMUSG00000062929,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7408,cg01678399,0.0000391,0.0000135,2.905138097,0.003934947,gain,ns,0.0000533,0.0000229,2.32844631,0.02053127,pos,ns,0.011312526,0.006704051,1.68741645,0.092529149,pos,ns,1.033721432,0.000141588,0.000230552,0.614128092,0.539581107,pos,ns,0.284678513,Nr2e1,Nr2e1_Exon,10,42567547,42567596,42567547,42567548,50,-,CGGCAGCATTCCGGAAACTTCTCAGTTCAGAACCACTATGTGTAGGAACT,"Exon (Nr2e1-201/Nr2e1, exon 8 of 9)",10,42561963,42583632,21670,2,Nr2e1-201,16036,Nr2e1-201;Nr2e1-202;Nr2e1-203,Nr2e1;Nr2e1;Nr2e1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,11,21907,ENSMUSG00000019803,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
24616,cg23034244,-0.0000107,0.00000841,-1.272134966,0.204278596,loss,ns,-0.0000333,0.0000143,-2.328323332,0.020537886,neg,ns,0.009476591,0.004186933,2.263372676,0.024303945,pos,ns,1.614323219,-0.000346105,0.000143988,-2.403699191,0.016816971,neg,ns,0.767129501,Kif5a,Kif5a_Exon,10,127231453,127231502,127231501,127231502,50,-,AGTCGTTTTTCCAATTTAGGAAGCTCACAACGCAGATCTGCATTGTCACG,"Exon (Kif5a-201/Kif5a, exon 24 of 29)",10,127225696,127263348,37653,2,Kif5a-201,31846,Kif5a-201;Kif5a-202,Kif5a;Kif5a,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,8,16572,ENSMUSG00000074657,conserved gene and region,10,127231443,127231578,136,*,136,10,0.551470588,0.967283073,0.073529412,0.00000115,CpGisland,TRUE,NA,NRS
17819,cg25500822,-0.00000568,0.0000106,-0.534838286,0.593145092,loss,ns,0.000042,0.0000181,2.328322705,0.02053792,pos,ns,-0.001552664,0.005288829,-0.293574215,0.769279725,neg,ns,0.113915714,0.0000483,0.000181882,0.265679751,0.790662458,pos,ns,0.76564469,Irx3,Irx3_Intergenic_upstream,8,91863763,91863812,91863763,91863764,50,+,CGTCCTAGCTGTCAGCAGGCAAATGCTTTCATTTTGGTCTCAGGCAAGGG,Distal Intergenic,8,91798525,91802067,3543,2,Irx3-202,-61696,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,15,36,16373,ENSMUSG00000031734,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19846,cg20209356,0.00000132,0.00000514,0.2573034,0.797115272,gain,ns,0.0000203,0.00000873,2.328318396,0.020538152,pos,ns,0.004973422,0.002557528,1.944620561,0.052724839,pos,ns,1.277984735,-0.0000206,0.000088,-0.234434879,0.814802144,neg,ns,0.930293226,Nlgn3,Nlgn3_Exon,X,101307031,101307080,101307079,101307080,50,-,TTCTCTGTTCTGTGCTGTTGTGTCTCCCCGTGTCTGGTCCCCAGGATCCG,"Exon (Gm21986-201/Gm21986-201, exon 7 of 11)",20,101299168,101325963,26796,1,Nlgn3-202,7863,Nlgn3-202;Nlgn3-203;Nlgn3-206;Nlgn3-201;Nlgn3-205,Nlgn3;Nlgn3;Nlgn3;Nlgn3;Nlgn3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,16,245537,ENSMUSG00000031302,conserved gene and region,X,101307059,101307160,102,*,102,9,0.607843137,1.092857143,0.088235294,0.00000109,CpGisland,TRUE,U11,Tr-P
9687,cg01644941,-0.00000606,0.00000388,-1.562705167,0.119142198,loss,ns,0.0000153,0.00000658,2.327971023,0.02055685,pos,ns,0.004303797,0.001929152,2.230926199,0.026401122,pos,ns,1.578377616,-0.00010765,0.0000663,-1.622613879,0.105688457,neg,ns,0.9443636,Dmxl1,Dmxl1_Exon,18,49957295,49957344,49957343,49957344,50,-,ATTCCAGACTTGGCAGTGTCATAACAAAACAGCCAATGATTTTGTCTTCG,"Exon (Dmxl1-202/Dmxl1, exon 40 of 43)",18,49832670,49964254,131585,1,Dmxl1-202,124625,Dmxl1-202;Dmxl1-201;Dmxl1-204;Dmxl1-203,Dmxl1;Dmxl1;Dmxl1;Dmxl1,0;0;7196;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,240283,ENSMUSG00000037416,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26510,cg01745990,-0.000000938,0.000000973,-0.963527325,0.336033955,loss,ns,0.00000385,0.00000165,2.327965423,0.020557151,pos,ns,0.000455774,0.000484379,0.940946352,0.347464989,pos,ns,0.459088949,-0.00000958,0.0000167,-0.57525013,0.56553943,neg,ns,0.969974702,Adgrl2,Adgrl2_Exon,3,148859395,148859444,148859395,148859396,50,-,CGATAGGGAGTCCAGGGCATGAAATAAATTTTATCTGCAGCCTGAAGAGG,"Exon (Adgrl2-202/Adgrl2, exon 4 of 23)",3,148815586,148954635,139050,2,Adgrl2-202,95191,Adgrl2-202;Adgrl2-208;Adgrl2-205;Adgrl2-217;Adgrl2-220;Adgrl2-215;Adgrl2-204;Adgrl2-212;Adgrl2-213;Adgrl2-214,Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,10,99633,ENSMUSG00000028184,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
628,cg14467140,-0.000000852,0.00000218,-0.390994759,0.696069692,loss,ns,0.00000861,0.0000037,2.327427305,0.020586147,pos,ns,0.001129054,0.001084264,1.041309832,0.298543196,pos,ns,0.524992823,0.0000307,0.0000373,0.822376721,0.41149462,pos,ns,0.959189644,Rbfox1,Rbfox1_Intron,16,7293111,7293160,7293111,7293112,50,+,CGCTTAGGCCCCTCACCAAACTCTCAGTAACCATGGTAACTGTATACAAA,"Intron (Rbfox1-205/Rbfox1, intron 8 of 11)",16,5885355,7353045,1467691,1,Rbfox1-205,1407756,Rbfox1-205;Rbfox1-201;Rbfox1-202;Rbfox1-203;Rbfox1-208;Rbfox1-207,Rbfox1;Rbfox1;Rbfox1;Rbfox1;Rbfox1;Rbfox1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,35,268859,ENSMUSG00000008658,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13975,cg24625070,0.0000451,0.0000118,3.808647935,0.000168449,gain,ns,0.0000468,0.0000201,2.327186551,0.020599131,pos,ns,0.01845599,0.005893858,3.13139349,0.001905697,pos,ns,2.719946126,-0.000689203,0.000202689,-3.400290779,0.000761277,neg,ns,0.469973537,Hcfc1,Hcfc1_Promoter,X,73966956,73967005,73967004,73967005,50,+,CTCCCTGGGAGCCGCCATCTTGTGTGAAGAAGTAACAACTAAACATGGCG,Promoter (<=1kb),20,73942792,73966357,23566,2,Hcfc1-201,-599,Hcfc1-201;Hcfc1-202,Hcfc1;Hcfc1,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,4,15161,ENSMUSG00000031386,conserved gene and region,X,73966821,73967069,249,*,249,19,0.59437751,0.867914144,0.076305221,1.44E-12,CpGisland,TRUE,U1,Pr-A
19080,cg03679521,0.000118036,0.00000665,17.7384181,4.37E-49,gain,yes,-0.0000263,0.0000113,-2.326647794,0.020628212,neg,ns,0.008444144,0.0033119,2.549637853,0.011264648,pos,ns,1.94828236,0.0000795,0.000113896,0.697629512,0.485931816,pos,ns,0.14024171,Neurod2,Neurod2_fiveUTR,11,98329605,98329654,98329605,98329606,50,-,CGGAGCGAGTGTGGCATCTCTACCAGGCGGGGTACCAGCCTCTATGCCAG,Promoter (<=1kb),11,98325415,98329648,4234,2,Neurod2-201,0,Neurod2-201,Neurod2,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,22,18013,ENSMUSG00000038255,conserved gene and region,11,98329512,98329756,245,*,245,22,0.657142857,0.835658915,0.089795918,5.08E-16,CpGisland,TRUE,U13,Hc-P
10679,cg23197560,-0.0000161,0.00000617,-2.614853455,0.009362875,loss,ns,0.0000244,0.0000105,2.326468802,0.020637882,pos,ns,-0.00061289,0.003070256,-0.19962183,0.841907231,neg,ns,0.074735761,-0.000131461,0.000105586,-1.245064586,0.214048357,neg,ns,0.742579906,Myh6,Myh6_Exon,14,54949067,54949116,54949115,54949116,50,+,GACCAACAAGCTTTTTGCTCGTCTTATACGTGAGCATCAGGTATAACCCG,"Exon (Mir208a-201/Mir208a-201, exon 1 of 1)",14,54941921,54966641,24721,2,Myh6-201,17525,Myh6-201;Myh6-205;Myh6-207;Myh6-206,Myh6;Myh6;Myh6;Myh6,0;0;-4556;-4274,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,17888,ENSMUSG00000040752,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12266,cg26521863,-0.00000953,0.00000456,-2.08706833,0.037698532,loss,ns,0.000018,0.00000775,2.326247778,0.020649828,pos,ns,0.003360397,0.00227162,1.479295177,0.14007688,pos,ns,0.85363354,-0.000148266,0.0000781,-1.897907119,0.058637121,neg,ns,0.902902364,AL772407.1,AL772407.1_Intergenic_upstream,2,63670218,63670267,63670218,63670219,50,+,CGTTAGTGGTTCATTAGCAGTAAATGTGTTAACGGGAATCTGTTTGAAAA,Distal Intergenic,2,63410771,63411266,496,2,AL772407.1-201,-258952,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,7,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3784,cg25310787,-0.00000489,0.00000133,-3.686682335,0.000268146,loss,ns,0.00000524,0.00000225,2.326177895,0.020653606,pos,ns,0.001882789,0.000659625,2.854333233,0.004603259,pos,ns,2.336934624,-0.0000457,0.0000227,-2.012909408,0.044988435,neg,ns,0.056559474,Abca2,Abca2_fiveUTR,2,25428758,25428807,25428758,25428759,50,+,CGTGGCCCCGCCATGGGCTTCCTGCACCAGCTGCAGCTGCTGCTCTGGAA,Promoter (<=1kb),2,25428703,25448540,19838,1,Abca2-201,55,Abca2-201;Fut7-204;Fut7-202;Fut7-203;Fut7-201;Fut7-205,Abca2;Fut7;Fut7;Fut7;Fut7;Fut7,0;5491;5379;5205;5064;4110,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,3,11305,ENSMUSG00000026944,conserved gene and region,2,25428495,25428766,272,*,272,47,0.805147059,1.088,0.172794118,5.79E-49,CpGisland,TRUE,U2,Pr-W
18404,cg17292613,-0.00000105,0.0000157,-0.066978218,0.94664222,loss,ns,0.0000622,0.0000267,2.326093623,0.020658164,pos,ns,-0.009291903,0.007834785,-1.185980609,0.236538165,neg,ns,0.626098776,0.000283993,0.000269438,1.054019962,0.292694589,pos,ns,0.402262214,Arhgef9,Arhgef9_fiveUTR,X,95165592,95165641,95165592,95165593,50,-,CGTCATACATATCACAGCGAGGCCATGTTGAAGCTCAAAACGTTTTCCCC,Promoter (<=1kb),20,95048935,95166361,117427,2,Arhgef9-202,720,Arhgef9-202;Arhgef9-217;Arhgef9-205;Arhgef9-207;Arhgef9-210;Arhgef9-203;Arhgef9-209;Arhgef9-206;Arhgef9-208;Arhgef9-204;Arhgef9-216;Arhgef9-219;Arhgef9-201;Arhgef9-218;Arhgef9-220;Arhgef9-213;Arhgef9-214,Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,8,14,236915,ENSMUSG00000025656,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
25736,cg00035308,0.0000184,0.00000529,3.487209183,0.000558631,gain,ns,-0.0000209,0.00000898,-2.325945867,0.020666156,neg,ns,-0.001797776,0.002632131,-0.683011378,0.495109768,neg,ns,0.305298506,0.000107044,0.0000905,1.18256346,0.237888407,pos,ns,0.928038092,Tspan5,Tspan5_threeUTR,3,138896825,138896874,138896873,138896874,50,+,AACCTAAATATTTACTTCAATTGCACAGATTCCAATGCAAGTCGAGAGCG,3' UTR,3,138742195,138907905,165711,1,Tspan5-201,154630,Tspan5-201;Tspan5-207;Tspan5-204;Tspan5-209;Tspan5-206;Tspan5-205;Tspan5-208;Tspan5-202;Tspan5-203,Tspan5;Tspan5;Tspan5;Tspan5;Tspan5;Tspan5;Tspan5;Tspan5;Tspan5,0;0;0;154056;0;118618;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,2,56224,ENSMUSG00000028152,conserved gene and region,3,138896867,138896964,98,*,98,10,0.642857143,0.98989899,0.102040816,5.13E-08,CpGisland,TRUE,NA,NRS
8822,cg06530611,-0.0000404,0.0000135,-3.002630994,0.002894369,loss,ns,0.0000532,0.0000229,2.325685724,0.020680234,pos,ns,0.03265902,0.006702907,4.872366798,0.00000176,pos,ns,5.753926816,-0.001763317,0.000230512,-7.649553237,2.56E-13,neg,yes,0.856807727,Gpx4-ps2,Gpx4-ps2_Intergenic_downstream,10,45889703,45889752,45889703,45889704,50,-,CGATGCAATTTTCTGCCTCATCGGCCTGGCACCAATAATATGCAAAGGAA,Distal Intergenic,10,45875305,45876086,782,1,Gpx4-ps2-202,14447,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,3,664781,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8511,cg11576951,-0.00000207,0.00000653,-0.316502559,0.7518341,loss,ns,0.0000258,0.0000111,2.325553274,0.020687404,pos,ns,0.000707384,0.003252478,0.217490797,0.827968958,pos,ns,0.081985945,0.0000329,0.000111852,0.294240021,0.768771422,pos,ns,0.573408599,Lbx1,Lbx1_Intergenic_upstream,19,45257742,45257791,45257742,45257743,50,-,CGAGCAACAATTCATCTCTAACTGGTAGGAGAGGGACTCGCTGACATTTA,Distal Intergenic,19,45232684,45235812,3129,2,Lbx1-201,-21979,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,15,50,16814,ENSMUSG00000025216,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26561,cg22853713,0.000032,0.0000144,2.213851491,0.027566568,gain,ns,-0.000057,0.0000245,-2.325440829,0.020693494,neg,ns,-0.010224662,0.007184736,-1.423108907,0.155710161,neg,ns,0.807683046,0.000443503,0.000247082,1.794960243,0.073634062,pos,ns,0.802803259,Casz1,Casz1_Intron,4,148921759,148921808,148921759,148921760,50,+,CGCAGGCGTGGAATGTCACCCACACATCCTGGAGACTGGAGTGGGGAGTT,"Intron (Casz1-201/Casz1, intron 4 of 15)",4,148804429,148945129,140701,1,Casz1-201,117330,Casz1-201;Casz1-202;Casz1-206,Casz1;Casz1;Casz1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,94,124,69743,ENSMUSG00000028977,mapped to different genes,4,148921595,148921796,202,*,202,14,0.554455446,0.916099773,0.069306931,7.84E-09,CpGisland,TRUE,NA,NRS
10145,cg11199141,0.000130532,0.0000124,10.55477183,1.88E-22,gain,yes,-0.0000489,0.000021,-2.325340729,0.020698916,neg,ns,0.018240347,0.006155243,2.963383775,0.003278454,pos,ns,2.484330942,-0.000741939,0.000211678,-3.505032161,0.000523873,neg,ns,0.501685591,Gm28308,Gm28308_Exon,6,52204185,52204234,52204185,52204186,50,+,CGCTGAGATCCATGCCATTGTAGCCGTAGCCGTACCTGCCGGAGTGCATG,"Exon (Hoxa5-201/Hoxa5, exon 1 of 2)",6,52163359,52213339,49981,2,Gm28308-201,9105,Gm28308-201;Hoxa3-201;Hoxa3-203;Hoxa5-201;Hoxa6-201,Gm28308;Hoxa3;Hoxa3;Hoxa5;Hoxa6,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,30,103,,NA,mapped to different genes,6,52203658,52204321,664,*,664,70,0.680722892,0.922222222,0.105421687,5.32E-55,CpGisland,TRUE,U3,Pr-B
22011,cg01461078,-0.0000594,0.0000106,-5.62869027,4.07E-08,loss,yes,0.0000417,0.0000179,2.325323982,0.020699824,pos,ns,-0.00043201,0.005256359,-0.08218801,0.934550249,neg,ns,0.029397343,-0.000209832,0.000180766,-1.160793153,0.246619125,neg,ns,0.654509642,Elavl4,Elavl4_Intergenic_downstream,4,110120854,110120903,110120902,110120903,50,+,CCCACTTGTTGGAACTTTCCAGAAATATTGCACTGCAGACATTTTCCACG,Distal Intergenic,4,110206359,110223148,16790,2,Elavl4-211,102245,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,36,15572,ENSMUSG00000028546,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1962,cg01811415,-0.00000826,0.00000387,-2.132566415,0.033745829,loss,ns,0.0000153,0.00000658,2.325230188,0.020704906,pos,ns,0.000471861,0.001927582,0.244794418,0.806777573,pos,ns,0.093246183,-0.0000341,0.0000663,-0.514300272,0.607408509,neg,ns,0.927735494,Tfec,Tfec_Intergenic_downstream,6,16607477,16607526,16607525,16607526,50,+,TGGGAGTAATTGTATCCAATTGTACGGCACAGCTTCCAGGAATGAGCCCG,Distal Intergenic,6,16834692,16835263,572,2,Tfec-204,227737,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,19,23,21426,ENSMUSG00000029553,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6777,cg10238356,-0.00000905,0.00000619,-1.461591446,0.144866105,loss,ns,0.0000245,0.0000105,2.325020215,0.020716286,pos,ns,0.003340708,0.003082169,1.083882074,0.279259352,pos,ns,0.553992274,-0.000074,0.000105996,-0.698280513,0.485525249,neg,ns,0.899826244,Lamp2,Lamp2_Exon,X,38405525,38405574,38405525,38405526,50,-,CGCTATGGGCACAAGGAAGTTGTCGTCATCTGCACTGCAGTCTTGAGCTA,"Exon (Lamp2-201/Lamp2, exon 9 of 9)",20,38401357,38456454,55098,2,Lamp2-203,50880,Lamp2-203;Lamp2-201,Lamp2;Lamp2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,16784,ENSMUSG00000016534,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19387,cg06667514,-0.00000678,0.00000534,-1.268758722,0.205478986,loss,ns,0.0000211,0.00000908,2.325013196,0.020716667,pos,ns,-0.005310183,0.002658965,-1.997086705,0.046689661,neg,ns,1.330779277,0.0000675,0.0000914,0.738676423,0.460662387,pos,ns,0.888596828,Foxn3,Foxn3_threeUTR,12,99196419,99196468,99196467,99196468,50,-,GTCTCTTTTTGAGGGGCAGTGTGTCGCTGGGGACCTTCCTGGCCTTGGCG,3' UTR,12,99190078,99393797,203720,2,Foxn3-201,197329,Foxn3-201;Foxn3-209;Foxn3-202;Foxn3-212;Foxn3-211;Foxn3-206,Foxn3;Foxn3;Foxn3;Foxn3;Foxn3;Foxn3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,17,71375,ENSMUSG00000033713,conserved gene but different region,12,99196278,99196548,271,*,271,19,0.597785978,0.785267653,0.070110701,6.73E-12,CpGisland,TRUE,NA,NRS
10276,cg21876626,0.000103653,0.00000973,10.65118835,8.82E-23,gain,yes,-0.0000384,0.0000165,-2.324714503,0.020732866,neg,ns,0.014435869,0.004843496,2.980464591,0.003105896,pos,ns,2.507813109,-0.000497912,0.000166567,-2.989253611,0.003020385,neg,ns,0.119580016,Sall2,Sall2_Exon,14,52328117,52328166,52328165,52328166,50,+,CTGGGACCTTCGCAGTCCGAGATTAACTGTTGGGGTTTCCGCTGCTTTCG,Promoter (<=1kb),14,52311177,52328762,17586,2,Sall2-201,596,Sall2-201,Sall2,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,50524,ENSMUSG00000049532,conserved gene and region,14,52328069,52328282,214,*,214,15,0.598130841,0.786764706,0.070093458,1.69E-09,CpGisland,TRUE,U3,Pr-B
2465,cg11699476,0.0000465,0.0000164,2.838013397,0.004838917,gain,ns,0.0000647,0.0000278,2.324694869,0.020733931,pos,ns,0.015205745,0.008155985,1.864366584,0.06321522,pos,ns,1.199178344,-0.000117008,0.000280484,-0.417164957,0.676846499,neg,ns,0.783876166,Crh,Crh_Promoter,3,19695492,19695541,19695540,19695541,50,+,CTATCTCAACACTGAATCTCACATCCAATTATATCAACAGATATTTATCG,Promoter (<=1kb),3,19693401,19695396,1996,2,Crh-201,-96,Crh-201;Trim55-201,Crh;Trim55,0;51018,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,3,12918,ENSMUSG00000049796,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
9036,cg06369721,-0.0000262,0.00000795,-3.297957746,0.001087171,loss,ns,-0.0000314,0.0000135,-2.324408616,0.020749467,neg,ns,-0.002441444,0.003955391,-0.617244717,0.537526422,neg,ns,0.269600183,0.00000394,0.000136026,0.028975511,0.976902767,pos,ns,0.88972995,Cdkn3,Cdkn3_Intergenic_upstream,14,46688270,46688319,46688318,46688319,50,+,TTATGTTTAATTTTCTTTGGCCCAGGCTTTCCTCAATGGTTTTCTTTTCG,Distal Intergenic,14,46760541,46771669,11129,1,Cdkn3-201,-72222,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,72391,ENSMUSG00000037628,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3454,cg17798626,0.0000449,0.00000918,4.887386242,0.00000164,gain,yes,-0.0000362,0.0000156,-2.324095128,0.020766493,neg,ns,0.003467144,0.004567608,0.759072181,0.448386158,pos,ns,0.348347803,-0.000267115,0.00015708,-1.700505478,0.090038781,neg,ns,0.391955804,Bcl11a,Bcl11a_Intron,11,24094064,24094113,24094112,24094113,50,-,AATCTTATTCTACATACAAGTGGATTGCTTAACAAGTCAGCACAGACACG,"Intron (Bcl11a-201/Bcl11a, intron 2 of 4)",11,24078056,24173194,95139,1,Bcl11a-201,16008,Bcl11a-201;Bcl11a-203;Bcl11a-205;Bcl11a-202;Bcl11a-204,Bcl11a;Bcl11a;Bcl11a;Bcl11a;Bcl11a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,98,14025,ENSMUSG00000000861,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5180,cg15666331,-0.00000697,0.00000368,-1.895084621,0.059011406,loss,ns,0.0000145,0.00000625,2.323985599,0.020772444,pos,ns,0.005353498,0.001830102,2.925245114,0.003695854,pos,ns,2.4322852,-0.000138273,0.0000629,-2.197010715,0.028759465,neg,ns,0.937917028,Prrxl1,Prrxl1_Intron,14,32605500,32605549,32605500,32605501,50,-,CGGTCATTCATAATTAACTAGTGATAATGTTCTACACTAATTTGTCCGCG,"Intron (Prrxl1-203/Prrxl1, intron 4 of 7)",14,32599407,32649204,49798,1,Prrxl1-203,6093,Prrxl1-203;Prrxl1-204;Prrxl1-202;Prrxl1-201;Prrxl1-205,Prrxl1;Prrxl1;Prrxl1;Prrxl1;Prrxl1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,23,107751,ENSMUSG00000041730,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2255,cg26751445,0.0000474,0.0000123,3.867968602,0.00013377,gain,ns,0.0000484,0.0000208,2.323905901,0.020776776,pos,ns,0.006338593,0.006103102,1.038585396,0.299806989,pos,ns,0.523158247,0.0000959,0.000209885,0.456765119,0.648159763,pos,ns,0.287444542,Meis1,Meis1_Intergenic_downstream,11,18874407,18874456,18874455,18874456,50,-,TGCAAGACAGGTACTTGATTTAGCATTTAAGCAAAAGGTTACACAAACCG,Distal Intergenic,11,18880668,19012002,131335,2,Meis1-203,137595,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,88,17268,ENSMUSG00000020160,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
1479,cg27096534,-0.0000186,0.00000822,-2.258941309,0.02458153,loss,ns,0.0000324,0.000014,2.323839595,0.02078038,pos,ns,0.026808682,0.004089667,6.555224304,2.32E-10,pos,ns,9.634810835,-0.000589179,0.000140643,-4.189170926,0.0000365,neg,ns,0.769410247,Usp9x,Usp9x_Exon,X,13156057,13156106,13156057,13156058,50,+,CGATTTGACTATGACTGGGAAAGAGAATGTGCAATCAAGTTCAATGATTA,"Exon (Usp9x-201/Usp9x, exon 35 of 45)",20,13071514,13173328,101815,1,Usp9x-201,84543,Usp9x-201;Usp9x-203,Usp9x;Usp9x,0;-4751,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,10,22284,ENSMUSG00000031010,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26828,cg16111425,0.00000233,0.00000311,0.749253394,0.454272656,gain,ns,-0.0000123,0.00000529,-2.323791658,0.020782986,neg,ns,-0.000479301,0.001549546,-0.309317324,0.757287952,neg,ns,0.120738953,-0.0000182,0.0000533,-0.341205155,0.73318029,neg,ns,0.929655606,Smg7,Smg7_Exon,1,152861699,152861748,152861699,152861700,50,-,CGAGGCAGTGCTGGCAGATATAGGAACAGGAGCTAGACTGTGGCTTCACT,"Exon (Smg7-202/Smg7, exon 5 of 22)",1,152836995,152902622,65628,2,Smg7-202,40874,Smg7-202;Smg7-201;Smg7-203;Smg7-204,Smg7;Smg7;Smg7;Smg7,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,7,226517,ENSMUSG00000042772,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6590,cg25352702,-0.0000101,0.00000422,-2.396346503,0.017151728,loss,ns,-0.0000166,0.00000716,-2.323654401,0.020790449,neg,ns,-0.006499106,0.002098759,-3.096642398,0.002136166,neg,ns,2.670364903,0.0000422,0.0000722,0.584772855,0.559125816,pos,ns,0.815578397,Dennd1a,Dennd1a_Intron,2,37815059,37815108,37815059,37815060,50,+,CGCTGGATGCTTCCTGTGTTTCAAGAAGTTGGTCCTGCCAGCTGGAGCTG,"Intron (Dennd1a-201/Dennd1a, intron 20 of 21)",2,37798991,38287375,488385,2,Dennd1a-201,472267,Dennd1a-201;Dennd1a-206;Dennd1a-207,Dennd1a;Dennd1a;Dennd1a,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,46,227801,ENSMUSG00000035392,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15138,cg07062661,0.0000973,0.0000367,2.648688391,0.00849427,gain,ns,0.000145061,0.0000624,2.323591405,0.020793876,pos,ns,0.038436056,0.018289773,2.101505333,0.03640348,pos,ns,1.438857103,-0.000248559,0.000628984,-0.395174989,0.692985529,neg,ns,0.418074424,Maff,Maff_Exon,15,79357619,79357668,79357667,79357668,50,-,CTGCAGAAGCAGAAGTCGGAGCTGGAGCGCGAGGTGGACAAGCTGGCGCG,"Exon (Maff-203/Maff, exon 3 of 3)",15,79346621,79359072,12452,1,Maff-203,10998,Maff-203;Maff-201;Maff-202;Maff-204;Tmem184b-201;Tmem184b-202;Tmem184b-204,Maff;Maff;Maff;Maff;Tmem184b;Tmem184b;Tmem184b,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,5,17133,ENSMUSG00000042622,conserved gene but different region,15,79357314,79357884,571,*,571,71,0.712784588,0.979251208,0.124343257,1.75E-61,CpGisland,TRUE,U4,Pr-F
21410,cg23708543,0.0000379,0.00000564,6.718535872,8.79E-11,gain,yes,-0.0000222,0.00000958,-2.322986054,0.020826825,neg,ns,-0.00857006,0.002806004,-3.054186393,0.002452509,neg,ns,2.610389451,0.000384852,0.0000965,3.988172416,0.0000831,pos,ns,0.806576307,Sema3f,Sema3f_Promoter,9,107717184,107717233,107717232,107717233,50,+,TACTTAGTTCCAAATGACTGGGGAATGTCCCTTCCATGACAGCGGTGGCG,Promoter (6-7kb),9,107681500,107710475,28976,2,Sema3f-201,-6709,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,6,20350,ENSMUSG00000034684,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7792,cg19691292,-0.00000337,0.0000022,-1.533313282,0.126218573,loss,ns,0.00000868,0.00000374,2.322878732,0.020832671,pos,ns,0.002872785,0.001094275,2.625285256,0.009086941,pos,ns,2.041582298,-0.0000706,0.0000376,-1.876645357,0.061505926,neg,ns,0.943816747,Melk,Melk_Intron,4,44319600,44319649,44319600,44319601,50,-,CGAGTCGCAGTGTAATACAGTCTGCTGGTTGAATCTAATTAAGGTGTCGT,"Intron (Melk-201/Melk, intron 8 of 17)",4,44300876,44364675,63800,1,Melk-201,18724,Melk-201;Melk-203;Melk-202;Melk-204,Melk;Melk;Melk;Melk,0;0;16032;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,3,17279,ENSMUSG00000035683,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22095,cg10436985,0.000000238,0.000013,0.018324462,0.985391801,gain,ns,0.0000511,0.000022,2.322753208,0.020839511,pos,ns,-0.000686582,0.006450842,-0.106432938,0.915307702,neg,ns,0.038432883,0.000327704,0.000221844,1.477181296,0.14064221,pos,ns,0.450119074,Pou3f4,Pou3f4_Intergenic_downstream,X,110817754,110817803,110817802,110817803,50,+,CCCAAATATTTCTGCCGACTTTATAACTGTACAGTTTTGTATATTAAACG,Distal Intergenic,20,110814280,110817207,2928,1,Pou3f4-201,3474,Pou3f4-201,Pou3f4,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,7,18994,ENSMUSG00000056854,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26078,cg08475668,-0.00000365,0.00000239,-1.525113888,0.128250226,loss,ns,0.00000945,0.00000407,2.322631746,0.020846131,pos,ns,0.002054495,0.00119157,1.724192225,0.085670033,pos,ns,1.067171068,-0.0000293,0.000041,-0.714120198,0.475690197,neg,ns,0.945892662,Pak3,Pak3_Exon,X,143712309,143712358,143712309,143712310,50,+,CGGTCGCTTCAAGTCAATCAGAGGGAAAAATGGTATGAGTGATATAAATT,"Exon (Pak3-207/Pak3, exon 5 of 13)",20,143518591,143797792,279202,1,Pak3-201,193718,Pak3-201;Pak3-207;Pak3-205;Pak3-209;Pak3-208;Pak3-204;Pak3-202;Pak3-203;Pak3-210,Pak3;Pak3;Pak3;Pak3;Pak3;Pak3;Pak3;Pak3;Pak3,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,9,18481,ENSMUSG00000031284,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4544,cg25713925,-0.00000433,0.00000406,-1.066006926,0.287250039,loss,ns,0.000016,0.0000069,2.322218158,0.020868688,pos,ns,0.006748096,0.002021101,3.338821204,0.000943966,pos,ns,3.025043673,-0.000188961,0.0000695,-2.718641208,0.006924192,neg,ns,0.906517851,Tnpo3,Tnpo3_threeUTR,6,29571035,29571084,29571035,29571036,50,-,CGGATCAACACTCTTTGCTATAGCAGCCATGATAAAGAGAACCGCTTCTG,3' UTR,6,29540827,29609607,68781,2,Tnpo3-202,38523,Tnpo3-202;Tnpo3-201;Tnpo3-207;Tnpo3-206;Tnpo3-211,Tnpo3;Tnpo3;Tnpo3;Tnpo3;Tnpo3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,2,320938,ENSMUSG00000012535,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8552,cg12044283,0.0000454,0.0000257,1.768711949,0.077925297,gain,ns,-0.000101229,0.0000436,-2.321823081,0.020890254,neg,ns,0.012602669,0.012773067,0.986659619,0.324578986,pos,ns,0.4886796,-0.000536545,0.000439265,-1.221460593,0.22283976,neg,ns,0.485556352,Btrc,Btrc_Exon,19,45329980,45330029,45330028,45330029,50,-,CAGTAATGAAATTCACGGCAGGATTACCCTCTCCATCCAATGGGCCAGCG,"Exon (Gm28578-209/Gm28578-209, exon 6 of 7)",19,45363734,45507736,144003,1,Btrc-204,-33754,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,30,98,12234,ENSMUSG00000025217,conserved gene and region,19,45329908,45330151,244,*,244,14,0.471311475,1.056277056,0.057377049,8.59E-08,CpGisland,TRUE,NA,NRS
14116,cg14728913,-0.00000203,0.00000159,-1.27773269,0.202299692,loss,ns,0.00000627,0.0000027,2.321391569,0.020913832,pos,ns,0.001894627,0.000791232,2.394528743,0.017235388,pos,ns,1.763578942,-0.0000412,0.0000272,-1.512891577,0.13132599,neg,ns,0.965255134,Birc6,Birc6_Exon,17,74686097,74686146,74686145,74686146,50,-,AGTTGCTTCCTCGTATTTCTTCAGGGCAGTGATCACAACCAGATTCAACG,"Exon (Birc6-221/Birc6, exon 10 of 18)",17,74528295,74703356,175062,1,Birc6-202,157802,Birc6-202;Birc6-204;Birc6-213;Birc6-218;Birc6-220;Birc6-221;Birc6-215,Birc6;Birc6;Birc6;Birc6;Birc6;Birc6;Birc6,0;0;0;0;0;0;15890,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,10,12211,ENSMUSG00000024073,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15391,cg12600648,-0.0000253,0.00000868,-2.908598965,0.003892814,loss,ns,0.0000342,0.0000147,2.321097513,0.020929913,pos,ns,0.001832055,0.004321038,0.423984944,0.671870846,pos,ns,0.172714204,-0.000335334,0.0001486,-2.256617613,0.024728189,neg,ns,0.666672579,Gria2,Gria2_threeUTR,3,80689273,80689322,80689321,80689322,50,-,GCATTGCCAAACCAAGGCCCCCGACAAGGATGTAGAATACTCCAGCAACG,3' UTR,3,80681450,80802835,121386,2,Gria2-201,113513,Gria2-201;Gria2-202;Gria2-203;Gria2-206,Gria2;Gria2;Gria2;Gria2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,12,19,14800,ENSMUSG00000033981,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15394,cg18707651,-0.0000012,0.00000151,-0.792964288,0.428405093,loss,ns,0.00000595,0.00000257,2.32104251,0.020932922,pos,ns,0.001838488,0.000751607,2.446074525,0.014997717,pos,ns,1.823974844,-0.0000438,0.0000258,-1.69595603,0.090898157,neg,ns,0.963703848,Gria2,Gria2_Intron,3,80690607,80690656,80690607,80690608,50,+,CGATAGTCATTGATGCGCCATTTGGCCTAAGCAAACGGTAAGATTTGCAG,"Intron (Gria2-201/Gria2, intron 14 of 15)",3,80681450,80802835,121386,2,Gria2-201,112179,Gria2-201;Gria2-202;Gria2-203;Gria2-206,Gria2;Gria2;Gria2;Gria2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,19,14800,ENSMUSG00000033981,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24801,cg11579066,0.000000691,0.0000033,0.209292441,0.834357419,gain,ns,-0.000013,0.00000561,-2.321004437,0.020935005,neg,ns,0.000490937,0.0016444,0.298550801,0.76548283,pos,ns,0.116064546,-0.0000804,0.0000566,-1.421307703,0.156232495,neg,ns,0.925566181,Myl6b,Myl6b_fiveUTR,10,128497407,128497456,128497455,128497456,50,-,GGCACCCATCTCTGTTTAAATAGCCAGGGAGTCTGGGATGTCAAGGGGCG,5' UTR,10,128494157,128498685,4529,2,Myl6b-201,1229,Myl6-201;Myl6-213;Myl6-212;Myl6-202;Myl6-206;Myl6-209;Myl6-211;Myl6-205;Myl6-203;Myl6-214;Myl6-208;Myl6-215;Myl6-207;Myl6-210;Myl6-204;Myl6b-201;Myl6b-202,Myl6;Myl6;Myl6;Myl6;Myl6;Myl6;Myl6;Myl6;Myl6;Myl6;Myl6;Myl6;Myl6;Myl6;Myl6;Myl6b;Myl6b,0;0;0;0;0;0;0;0;0;0;0;-3578;-3614;-3262;-3833;0;-1851,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,1,216459,ENSMUSG00000039824,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
663,cg26112578,0.000091,0.000011,8.244726594,4.75E-15,gain,yes,0.0000435,0.0000187,2.320935921,0.020938754,pos,ns,0.025637282,0.005492563,4.667635761,0.00000454,pos,ns,5.342809426,-0.000593194,0.000188889,-3.140441116,0.001849579,neg,ns,0.51959602,Ppp1r3f,Ppp1r3f_Exon,X,7573413,7573462,7573461,7573462,50,-,TTGCGGCCGTGGTTGTTGGCCCAGAAAGTGCCCTCAGGGGTCTCATAGCG,Promoter (<=1kb),20,7557296,7574283,16988,2,Ppp1r3f-205,821,Foxp3-209;Ppp1r3f-205;Ppp1r3f-201;Ppp1r3f-203,Foxp3;Ppp1r3f;Ppp1r3f;Ppp1r3f,-182;0;0;-570,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,8,54646,ENSMUSG00000039556,conserved gene but different region,X,7573363,7573550,188,*,188,18,0.659574468,0.895238095,0.095744681,1.08E-13,CpGisland,TRUE,U6,En-Sp
15038,cg14603958,0.0000205,0.00000269,7.627709583,2.96E-13,gain,yes,-0.0000106,0.00000457,-2.320736888,0.020949648,neg,ns,0.000110548,0.001339331,0.082539741,0.934270787,pos,ns,0.029527231,0.0000763,0.0000461,1.65658897,0.098614346,pos,ns,0.058964535,Ntrk3,Ntrk3_fiveUTR,7,78577743,78577792,78577743,78577744,50,-,CGCCAGAAACTACACTTGGCTGGGCAAAGAGAGACATCCATCTCCGATCG,Promoter (<=1kb),7,78192380,78577783,385404,2,Ntrk3-206,0,Ntrk3-201;Ntrk3-206;Ntrk3-205;Ntrk3-202;Ntrk3-204;Ntrk3-210;Ntrk3-214;Ntrk3-212;Ntrk3-220;Ntrk3-218,Ntrk3;Ntrk3;Ntrk3;Ntrk3;Ntrk3;Ntrk3;Ntrk3;Ntrk3;Ntrk3;Ntrk3,0;0;0;0;0;0;0;0;906;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,15,18213,ENSMUSG00000059146,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27259,cg01810815,-0.00000077,0.00000152,-0.506976807,0.612531521,loss,ns,0.00000599,0.00000258,2.320538513,0.020960512,pos,ns,0.002394545,0.000756287,3.166184323,0.001698144,pos,ns,2.770025521,-0.0000461,0.000026,-1.772709001,0.077258922,neg,ns,0.964595618,Dnm3,Dnm3_Exon,1,162273635,162273684,162273635,162273636,50,-,CGGAAGATTGGTTCCCTGAAATAGCAAAGAATTATATGCTTTAGTTCAGA,"Exon (Dnm3-209/Dnm3, exon 4 of 5)",1,161982453,162295636,313184,2,Dnm3-203,21952,Dnm3-203;Dnm3-202;Dnm3-201;Dnm3-205;Dnm3-209,Dnm3;Dnm3;Dnm3;Dnm3;Dnm3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,6,103967,ENSMUSG00000040265,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21626,cg26644712,-0.0000108,0.00000356,-3.041762938,0.002552912,loss,ns,-0.000014,0.00000605,-2.320524451,0.020961282,neg,ns,-0.001510393,0.001771533,-0.852590991,0.394544381,neg,ns,0.403904137,0.000102876,0.0000609,1.688619855,0.092297889,pos,ns,0.916811149,Cep112,Cep112_Intron,11,108621348,108621397,108621348,108621349,50,-,CGGGACTTTAAAGGGAAAAGGTTTGATGGACTTGGACTCCGAACCAGATG,"Intron (Cep112-213/Cep112, intron 20 of 26)",11,108425192,108860615,435424,1,Cep112-213,196156,Cep112-213;Cep112-201;Cep112-206;Cep112-216;Cep112-208;Cep112-211;Cep112-218,Cep112;Cep112;Cep112;Cep112;Cep112;Cep112;Cep112,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,9,76380,ENSMUSG00000020728,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23790,cg07289766,0.000209579,0.0000134,15.66320108,3.86E-41,gain,yes,-0.0000527,0.0000227,-2.320191055,0.020979551,neg,ns,-0.004572323,0.006659548,-0.686581517,0.492859713,neg,ns,0.30727668,0.000245298,0.000229021,1.071070008,0.28497112,pos,ns,0.807381354,Mbnl2,Mbnl2_Exon,14,120389007,120389056,120389007,120389008,50,-,CGTTTGTATGGATTACATAAAGGGGCGTTGCATGAGGGAGAAATGCAAAT,"Exon (Mbnl2-201/Mbnl2, exon 5 of 9)",14,120275669,120431697,156029,1,Mbnl2-201,113338,Mbnl2-201;Mbnl2-204;Mbnl2-206;Mbnl2-202;Mbnl2-203;Mbnl2-208;Mbnl2-210,Mbnl2;Mbnl2;Mbnl2;Mbnl2;Mbnl2;Mbnl2;Mbnl2,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,16,105559,ENSMUSG00000022139,conserved gene and region,14,120388889,120389033,145,*,145,10,0.544827586,0.930680359,0.068965517,0.00000206,CpGisland,TRUE,U9,En-Pp
25777,cg18135595,0.000168662,0.0000108,15.56721138,8.96E-41,gain,yes,-0.0000427,0.0000184,-2.320167246,0.020980856,neg,ns,0.000176278,0.005392396,0.032690123,0.973942738,pos,ns,0.011466576,0.000397103,0.000185444,2.141363038,0.033024157,pos,ns,0.687676376,Uncx,Uncx_Promoter,5,139540003,139540052,139540051,139540052,50,-,AAAATTAACTTGCGTGAAGTTAATTGAGTAATTAAAACCCTCAACTGCCG,Promoter (3-4kb),5,139543494,139548179,4686,1,Uncx-201,-3491,Uncx-201;Uncx-202,Uncx;Uncx,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,22,88,22255,ENSMUSG00000029546,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
12591,cg12143541,0.000102541,0.0000172,5.962710783,6.75E-09,gain,yes,-0.0000678,0.0000292,-2.320090471,0.020985065,neg,ns,0.014807535,0.008559141,1.730025828,0.084620937,pos,ns,1.072522172,-0.000357309,0.000294348,-1.213898876,0.225710332,neg,ns,0.516066661,Vapa,Vapa_Exon,17,65594964,65595013,65594964,65594965,50,+,CGAGGTGCTGTAGTCTTCACTTTGAAACACACTTTTCTATCCGATGGATT,Promoter (<=1kb),17,65580420,65594970,14551,2,Vapa-202,0,Vapa-201;Vapa-202,Vapa;Vapa,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,30960,ENSMUSG00000024091,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
4040,cg17380121,-0.0000369,0.00000819,-4.502731013,0.00000951,loss,ns,0.0000323,0.0000139,2.319990832,0.020990529,pos,ns,-0.003915691,0.004075599,-0.960764523,0.337419349,neg,ns,0.471830017,0.000147836,0.00014016,1.054771762,0.292351084,pos,ns,0.823537443,Gm45647,Gm45647_Intergenic_upstream,8,26626616,26626665,26626664,26626665,50,+,CCCCTGTATCTAATTATCTGTCAACCTGAGGCAGTTTGTTTTCCAAATCG,Distal Intergenic,8,26780315,26780509,195,1,Gm45647-201,-153650,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,46,62,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2056,cg06685866,-0.0000188,0.0000148,-1.267156637,0.206050389,loss,ns,-0.0000584,0.0000252,-2.319943766,0.02099311,neg,ns,-0.015452931,0.007371628,-2.096271224,0.036868528,neg,ns,1.433344207,0.000150411,0.00025351,0.593315235,0.553402828,pos,ns,0.562818954,St7,St7_fiveUTR,6,17749432,17749481,17749480,17749481,50,+,ACACAGCTTGGACTGCATTGTCTGGCTTCATGACCCCTGCTGTGTAGCCG,5' UTR,6,17692933,17820447,127515,1,St7-212,56499,St7-212;St7-209;St7-208;St7-210;St7-202;St7-205;St7-219;St7-217;St7-207;St7-201;St7-204;St7-215;St7-203;St7-206;St7-214;St7-220;St7-216,St7;St7;St7;St7;St7;St7;St7;St7;St7;St7;St7;St7;St7;St7;St7;St7;St7,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,2,64213,ENSMUSG00000029534,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18694,cg15598853,-0.00000507,0.00000924,-0.548494491,0.583747196,loss,ns,0.0000364,0.0000157,2.319861585,0.020997618,pos,ns,0.002964984,0.004599879,0.644578667,0.519676943,pos,ns,0.284266551,-0.0000332,0.000158189,-0.20986641,0.833909799,neg,ns,0.319384277,Skap1,Skap1_Intron,11,96743141,96743190,96743141,96743142,50,-,CGCCTCTCTCAGGGAGATCTGGAGAAATACGCAGCACAGATGGGCCGAGC,"Intron (Skap1-204/Skap1, intron 11 of 12)",11,96464593,96758941,294349,1,Skap1-204,278548,Skap1-204;Skap1-203;Skap1-201,Skap1;Skap1;Skap1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,40,46,78473,ENSMUSG00000057058,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
8902,cg07322750,0.0000483,0.00000619,7.798251583,9.63E-14,gain,yes,-0.0000244,0.0000105,-2.319603569,0.021011777,neg,ns,0.003868438,0.003081284,1.255463194,0.210256159,pos,ns,0.677251274,-0.0000452,0.000105965,-0.426208243,0.6702519,neg,ns,0.130998904,Helt,Helt_fiveUTR,8,46294630,46294679,46294678,46294679,50,-,CTGTCCAGAGTCATTAAAGTAATTAAGTAAGCCTTTAATAGGCTGTTCCG,Promoter (<=1kb),8,46292039,46294671,2633,2,Helt-201,0,Helt-201;Helt-202;Helt-203,Helt;Helt;Helt,0;-641;-1295,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,7,22,234219,ENSMUSG00000047171,conserved gene but different region,8,46294678,46294897,220,*,220,21,0.65,0.923630548,0.095454546,6.99E-16,CpGisland,TRUE,U13,Hc-P
20165,cg13642593,-0.000000931,0.00000131,-0.711427026,0.477354636,loss,ns,0.00000516,0.00000222,2.31949169,0.021017919,pos,ns,0.001105445,0.000651337,1.697193798,0.090663693,pos,ns,1.042566595,-0.000017,0.0000224,-0.757062387,0.449587502,neg,ns,0.971212184,Gm49473,Gm49473_Intergenic_downstream,15,102777246,102777295,102777294,102777295,50,-,GCCCTCTAGGCCGTGAATTAATGTGTCATAACTCACGCCCAAGCACTGCG,Distal Intergenic,15,102795121,102795371,251,2,Gm49473-201,18125,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,12,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24819,cg07694338,-0.00000633,0.00000294,-2.151269201,0.032227389,loss,ns,-0.0000116,0.000005,-2.319262211,0.021030522,neg,ns,-0.003543313,0.001465233,-2.418259901,0.01617101,neg,ns,1.791262853,-0.0000162,0.0000504,-0.321043916,0.748393439,neg,ns,0.926265963,Phc2,Phc2_Exon,4,128710975,128711024,128710975,128710976,50,+,CGTTTCCTGTGATTCCAGGCCCAGCCAGGTAACCTGGTGCAGGTAGCTAG,"Exon (Phc2-212/Phc2, exon 1 of 3)",4,128654702,128752881,98180,1,Phc2-201,56273,Phc2-201;Phc2-207;Phc2-203;Phc2-212,Phc2;Phc2;Phc2;Phc2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,13,54383,ENSMUSG00000028796,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2077,cg04505310,-0.0000079,0.00000314,-2.516943402,0.012342078,loss,ns,0.0000124,0.00000533,2.319107347,0.021039031,pos,ns,0.001560662,0.001561917,0.999196531,0.31847879,pos,ns,0.496919485,-0.000181944,0.0000537,-3.387262891,0.000796994,neg,ns,0.923305243,Mmp16,Mmp16_Exon,4,17987589,17987638,17987589,17987590,50,-,CGGCTACCTTCCACCGACTGACCCCAGAATGTCAGTGCTGCGCTCTGCAG,"Exon (Mmp16-206/Mmp16, exon 3 of 12)",4,17852893,18117457,264565,1,Mmp16-206,134696,Mmp16-206;Mmp16-204;Mmp16-201;Mmp16-202;Mmp16-205,Mmp16;Mmp16;Mmp16;Mmp16;Mmp16,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,6,17389,ENSMUSG00000028226,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1045,cg21332917,-0.0000102,0.00000427,-2.385222602,0.017669349,loss,ns,-0.0000168,0.00000725,-2.31899395,0.021045263,neg,ns,-0.003150751,0.002123542,-1.483724658,0.138897972,neg,ns,0.857304096,0.000115534,0.000073,1.582042679,0.114659507,pos,ns,0.907725465,Fhit,Fhit_Intron,14,11134034,11134083,11134082,11134083,50,-,AACAACATCTGACATTTAAACTATTCTGCCAGTCGGACAAATTCCATTCG,"Intron (Fhit-206/Fhit, intron 1 of 8)",14,9550100,11162032,1611933,2,Fhit-206,27949,Fhit-206;Fhit-201;Fhit-202,Fhit;Fhit;Fhit,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,6,14198,ENSMUSG00000060579,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7639,cg17117945,0.00000635,0.00000246,2.581802046,0.010287402,gain,ns,-0.00000969,0.00000418,-2.318988071,0.021045586,neg,ns,0.005185312,0.001224558,4.234434021,0.0000302,pos,ns,4.519512565,-0.0000432,0.0000421,-1.02517858,0.306078226,neg,ns,0.944290323,Zbtb20,Zbtb20_Intron,16,43537672,43537721,43537720,43537721,50,+,AGTATTGTAAATGTATCAAGACGTCCTTCCCCATTATAGAAATGGGGACG,"Intron (Zbtb20-211/Zbtb20, intron 4 of 4)",16,42907542,43569781,662240,1,Zbtb20-211,630130,Zbtb20-211;Zbtb20-217;Zbtb20-204;Zbtb20-215;Zbtb20-201;Zbtb20-203;Zbtb20-214;Zbtb20-213;Zbtb20-219;Zbtb20-216;Zbtb20-208;Zbtb20-207;Zbtb20-220;Zbtb20-206;Zbtb20-221;Zbtb20-202;Zbtb20-205,Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,98,56490,ENSMUSG00000022708,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17359,cg13666243,0.0000291,0.000012,2.415743156,0.01628107,gain,ns,0.0000474,0.0000204,2.318974085,0.021046355,pos,ns,0.01567802,0.005987267,2.618560391,0.009263973,pos,ns,2.03320272,-0.000249854,0.000205902,-1.213465461,0.225875664,neg,ns,0.733316772,Me3,Me3_Exon,7,89848635,89848684,89848635,89848636,50,+,CGGAGCAGATTCTGAGGGACATGGCCTCCTTCCACGAGCGCCCTATCATC,"Exon (Me3-202/Me3, exon 11 of 14)",7,89632703,89854359,221657,1,Me3-202,215932,Me3-202;Me3-203;Me3-201,Me3;Me3;Me3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,109264,ENSMUSG00000030621,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4670,cg25396743,0.00000203,0.00000249,0.814293424,0.416101943,gain,ns,-0.00000981,0.00000423,-2.318782539,0.021056887,neg,ns,-0.00345302,0.001239603,-2.78558644,0.00567206,neg,ns,2.24625919,0.000101266,0.0000426,2.375484004,0.018133753,pos,ns,0.901234736,Uhrf2,Uhrf2_Exon,19,30086301,30086350,30086301,30086302,50,-,CGGAATTGGAGAGCTGGTAAGCCAGTCAGAGTGATACGCAGTTTTAAAGG,"Exon (Uhrf2-201/Uhrf2, exon 11 of 16)",19,30030513,30093722,63210,1,Uhrf2-201,55788,Uhrf2-207;Uhrf2-201;Uhrf2-204;Uhrf2-203,Uhrf2;Uhrf2;Uhrf2;Uhrf2,55788;0;0;-2706,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,109113,ENSMUSG00000024817,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3875,cg20098951,-0.0000342,0.00000644,-5.312079263,0.000000207,loss,yes,-0.0000254,0.0000109,-2.318681133,0.021062464,neg,ns,-0.001907216,0.003203619,-0.595331798,0.552056046,neg,ns,0.258016829,0.000123917,0.000110172,1.124754184,0.261563332,pos,ns,0.908477985,Nsd3,Nsd3_Intron,8,25676653,25676702,25676653,25676654,50,-,CGCTGCGAGATTAGGAGGCCTGATTGCGTTGTGTTTCCACCATTCCACAG,"Intron (Nsd3-211/Nsd3, intron 9 of 9)",8,25601601,25677214,75614,1,Nsd3-211,75052,Nsd3-211;Nsd3-203;Nsd3-208;Nsd3-204;Nsd3-206;Nsd3-201;Nsd3-205,Nsd3;Nsd3;Nsd3;Nsd3;Nsd3;Nsd3;Nsd3,0;74369;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,14,234135,ENSMUSG00000054823,conserved gene and region,8,25676544,25676764,221,*,221,19,0.601809955,0.956056466,0.085972851,1.56E-13,CpGisland,TRUE,U10,Tr-S
1911,cg24267761,-0.0000256,0.00000712,-3.588470421,0.000386452,loss,ns,0.0000281,0.0000121,2.318511859,0.021071777,pos,ns,0.002180926,0.003544498,0.615299095,0.538808642,pos,ns,0.268565448,-0.000227917,0.000121895,-1.869783287,0.062456374,neg,ns,0.831199061,Gm18557,Gm18557_Intergenic_upstream,10,16233883,16233932,16233883,16233884,50,-,CGTTTGTTAGAGTCTTAACCGCCCTCAGCTTTGCCTTGGGCCATTAACTA,Distal Intergenic,10,16364798,16366574,1777,1,Gm18557-201,-130915,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,100417357,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9883,cg16825575,-0.0000145,0.00000768,-1.890878894,0.059572813,loss,ns,-0.0000302,0.000013,-2.318319473,0.021082366,neg,ns,-0.004155132,0.003821437,-1.087321884,0.277739257,neg,ns,0.55636273,-0.00000583,0.000131419,-0.044372495,0.964636054,neg,ns,0.824580975,Gm49908,Gm49908_Intergenic_upstream,17,51358435,51358484,51358435,51358436,50,+,CGGTAGCACTGGTACAAACATTCTCTGGCCAGAGGCAAAACAGCCGGGTA,Distal Intergenic,17,51236771,51237062,292,2,Gm49908-201,-121373,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,9,9,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17834,cg27135454,-0.00000954,0.0000163,-0.583765865,0.559802349,loss,ns,0.0000643,0.0000278,2.317745905,0.021113963,pos,ns,0.005961928,0.008132005,0.733143679,0.464024828,pos,ns,0.333458781,-0.000219721,0.000279659,-0.785675718,0.432657581,neg,ns,0.536604401,Irx3,Irx3_Exon,8,91991660,91991709,91991708,91991709,50,+,GGCTGGGAGCTTCCACAATACCTGAGTGGTTAATTAAGAGCCGTTGCCCG,"Exon (Gm36670-202/Gm36670-202, exon 1 of 3)",8,91798525,91802067,3543,2,Irx3-202,-189593,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,16,36,16373,ENSMUSG00000031734,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
2900,cg11470772,0.00000137,0.00000621,0.220331046,0.825758373,gain,ns,0.0000244,0.0000105,2.317403723,0.021132834,pos,ns,0.007729876,0.003089026,2.502366562,0.012851339,pos,ns,1.89105162,-0.000217204,0.000106231,-2.044631726,0.041735546,neg,ns,0.901750148,Lrmda,Lrmda_Intron,14,22037214,22037263,22037262,22037263,50,-,AGGTGCTTTTGTTTCAAACTTCTTTCTTGACCTGTCAGGTTTTGAAGGCG,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,17502,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206,Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11510,cg12081311,-0.0000112,0.0000102,-1.100962999,0.271766886,loss,ns,-0.0000401,0.0000173,-2.317068474,0.021151336,neg,ns,0.00071716,0.005075595,0.141295771,0.887728064,pos,ns,0.05172005,-0.000248518,0.000174549,-1.423769418,0.155518952,neg,ns,0.919908971,Gm9022,Gm9022_Intergenic_downstream,14,58637957,58638006,58638005,58638006,50,+,ACTGCTGTGCCATTCAGCTATTATGTTTAACAATCTAATTAGAAAGGCCG,Distal Intergenic,14,58878833,58879315,483,2,Gm9022-202,241309,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,668177,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26562,cg22842781,0.0000439,0.0000106,4.158606087,0.0000415,gain,ns,-0.0000416,0.0000179,-2.3167043,0.02117145,neg,ns,-0.001566238,0.005257663,-0.297896255,0.765981895,neg,ns,0.115781495,0.000196006,0.000180811,1.084038322,0.279190181,pos,ns,0.871748216,Casz1,Casz1_Intron,4,148921842,148921891,148921842,148921843,50,+,CGCAGCTGCCGACCTCTATTGAGGGACAAACATAATCAGCACTGACGCAA,"Intron (Casz1-201/Casz1, intron 4 of 15)",4,148804429,148945129,140701,1,Casz1-201,117413,Casz1-201;Casz1-202;Casz1-206,Casz1;Casz1;Casz1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,94,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16543,cg09109440,0.00000137,0.00000179,0.763316319,0.445855273,gain,ns,0.00000704,0.00000304,2.316381039,0.021189319,pos,ns,0.003831318,0.000890734,4.301303204,0.0000228,pos,ns,4.642408085,-0.0000916,0.0000306,-2.989613864,0.003016927,neg,ns,0.961248755,Camkmt,Camkmt_Intron,17,85393932,85393981,85393980,85393981,50,+,GAGCGCTCAGTAATTAGATTCTTTTGAATTAGATTGGCCATTCAGGAACG,"Intron (Camkmt-201/Camkmt, intron 5 of 10)",17,85090552,85458588,368037,1,Camkmt-201,303380,Camkmt-201,Camkmt,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,41,44,73582,ENSMUSG00000071037,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2146,cg18362490,-0.0000194,0.00000822,-2.362323437,0.01877839,loss,ns,0.0000323,0.000014,2.316304736,0.021193539,pos,ns,0.007986472,0.004091324,1.952050821,0.05183222,pos,ns,1.285400188,-0.000366194,0.0001407,-2.602650251,0.00969518,neg,ns,0.865784895,Gm48800,Gm48800_Intron,13,18085535,18085584,18085583,18085584,50,+,GTGTTCATTTTCTGACTAATGGCATGTCATTTTGCAGAAGCCTTTGGTCG,"Intron (4930448F12Rik-201/4930448F12Rik-201, intron 5 of 5)",13,18094472,18095954,1483,2,Gm48800-201,10370,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,3,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1319,cg11664558,0.000016,0.00000296,5.427754719,0.000000115,gain,yes,-0.0000116,0.00000502,-2.316208181,0.021198879,neg,ns,-0.001010714,0.001471456,-0.68688053,0.492671512,neg,ns,0.307442549,0.000121552,0.0000506,2.402066993,0.016890781,pos,ns,0.05754827,Fezf2,Fezf2_fiveUTR,14,12345675,12345724,12345675,12345676,50,+,CGTGAGATCACTGTCTTTTACATTCAGCTGACATCACATGAAGTCACTTG,Promoter (<=1kb),14,12342094,12345844,3751,2,Fezf2-203,120,Fezf2-203;Fezf2-201;Fezf2-202,Fezf2;Fezf2;Fezf2,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,13,45,54713,ENSMUSG00000021743,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
5410,cg08652701,0.000174862,0.0000304,5.753362939,0.000000021,gain,yes,-0.00011959,0.0000516,-2.31611271,0.021204161,neg,ns,0.031166314,0.015126942,2.060318252,0.040202365,pos,ns,1.395748399,-0.001406584,0.000520214,-2.703854781,0.007232369,neg,ns,0.271120882,Rbpms,Rbpms_fiveUTR,8,33834399,33834448,33834447,33834448,50,+,GCCTTAGCAAACTCTAGTCGTAGTGTTTGCGGAATTTCAGGATCGAAGCG,5' UTR,8,33782643,33929863,147221,2,Rbpms-203,95415,Rbpms-203;Rbpms-213;Rbpms-201;Rbpms-208;Rbpms-205;Rbpms-204;Rbpms-202;Rbpms-209;Rbpms-210;Rbpms-214,Rbpms;Rbpms;Rbpms;Rbpms;Rbpms;Rbpms;Rbpms;Rbpms;Rbpms;Rbpms,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,5,19663,ENSMUSG00000031586,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12274,cg26261811,-8.25E-08,0.00000497,-0.016592038,0.986772749,loss,ns,-0.0000196,0.00000844,-2.315952333,0.021213037,neg,ns,-0.005631045,0.002473607,-2.276450873,0.023500574,neg,ns,1.628921522,0.0000657,0.0000851,0.772128622,0.440626477,pos,ns,0.893746378,Wdr7,Wdr7_threeUTR,18,63777547,63777596,63777595,63777596,50,+,CTCATAACTCCCTGATGGTTCAAGCAATAAAGACAAACCTAACAGACCCG,3' UTR,18,63708685,63989776,281092,1,Wdr7-201,68862,Wdr7-201;Wdr7-205;Wdr7-204;Wdr7-202,Wdr7;Wdr7;Wdr7;Wdr7,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,11,104082,ENSMUSG00000040560,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6619,cg03589795,0.0000013,0.00000208,0.622720804,0.533925816,gain,ns,-0.0000082,0.00000354,-2.315919722,0.021214842,neg,ns,-0.001967628,0.001037675,-1.896188689,0.058864762,neg,ns,1.23014461,0.0000323,0.0000357,0.905730057,0.36578216,pos,ns,0.943961493,Dennd1a,Dennd1a_Intron,2,37832299,37832348,37832299,37832300,50,+,CGGACTGCACACAGCTCCCTGCAATGTGTGTTTGACAGGACTGACATTTT,"Intron (Dennd1a-201/Dennd1a, intron 19 of 21)",2,37798991,38287375,488385,2,Dennd1a-201,455027,Dennd1a-201;Dennd1a-206;Dennd1a-207,Dennd1a;Dennd1a;Dennd1a,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,46,227801,ENSMUSG00000035392,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5153,cg19121679,-0.00000265,0.00000347,-0.764723388,0.445018011,loss,ns,0.0000137,0.00000589,2.315796221,0.021221679,pos,ns,0.00324903,0.001726831,1.881498193,0.060841062,pos,ns,1.215803216,-0.0000938,0.0000594,-1.578746238,0.115414093,neg,ns,0.923087733,Ercc6,Ercc6_Intron,14,32555496,32555545,32555544,32555545,50,+,AAACTAGGAGAGGTTACATATTTTACAAGCTTTTAATTTGAAACCGCCCG,"Intron (Ercc6-201/Ercc6, intron 8 of 20)",14,32513521,32580990,67470,1,Ercc6-201,41975,Ercc6-201;Ercc6-205;Ercc6-203;Ercc6-206,Ercc6;Ercc6;Ercc6;Ercc6,0;0;4244;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,319955,ENSMUSG00000054051,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13708,cg17334475,0.00000667,0.0000308,0.216852479,0.828465954,gain,ns,0.000120967,0.0000522,2.315445763,0.021241092,pos,ns,0.07364204,0.015305615,4.811439377,0.00000234,pos,ns,5.63012311,-0.002774339,0.000526359,-5.270813708,0.000000255,neg,yes,0.512597159,Tle1,Tle1_Intron,4,72196874,72196923,72196922,72196923,50,+,GTGTCCAACTGTGCAACTTCATCTGATGATAATTTTTTAAGAGGCAATCG,"Intron (Tle1-203/Tle1, intron 4 of 19)",4,72117142,72200919,83778,2,Tle1-203,3996,Tle1-203;Tle1-202;Tle1-204;Tle1-207;Tle1-201;Tle1-205;Tle1-209;Tle1-208,Tle1;Tle1;Tle1;Tle1;Tle1;Tle1;Tle1;Tle1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,20,21885,ENSMUSG00000008305,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24688,cg01749784,0.000133427,0.0000078,17.09757646,1.25E-46,gain,yes,-0.0000307,0.0000133,-2.315438838,0.021241476,neg,ns,0.007551374,0.003884051,1.94420067,0.052775665,pos,ns,1.277566285,-0.000180281,0.000133572,-1.349688363,0.17810073,neg,ns,0.31581653,Neurog2,Neurog2_Promoter,3,127625967,127626016,127626015,127626016,50,+,AAGCCTTCAGATTTGGGATCATTGCCTCCAGACAACAGCTTCATCAGCCG,Promoter (7-8kb),3,127633135,127635631,2497,1,Neurog2-201,-7119,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,13,14,11924,ENSMUSG00000027967,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
16074,cg08880309,0.000186574,0.0000134,13.94010953,1.26E-34,gain,yes,-0.0000526,0.0000227,-2.315083321,0.021261185,neg,ns,0.034901618,0.006661338,5.239430937,0.000000298,pos,ns,6.525503165,-0.000631463,0.000229083,-2.756484397,0.006188737,neg,ns,0.585529965,Zfp407,Zfp407_Intron,18,84354895,84354944,84354895,84354896,50,+,CGGTTGGGCCCAACGGGTTTGAAAAATTCTGTTACAGTCCAGTCACCCCT,"Intron (Zfp407-201/Zfp407, intron 2 of 2)",18,84128027,84558425,430399,2,Zfp407-201,203481,Zfp407-201;Zfp407-202;Zfp407-203,Zfp407;Zfp407;Zfp407,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,32,240476,ENSMUSG00000048410,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18510,cg04867391,-0.0000397,0.0000117,-3.402416684,0.000755593,loss,ns,0.0000458,0.0000198,2.314881005,0.021272409,pos,ns,-0.014991266,0.005802267,-2.583691217,0.010232434,neg,ns,1.990021031,0.00032114,0.000199539,1.609405088,0.108545616,pos,ns,0.730211505,Gm9051,Gm9051_Exon,X,96242837,96242886,96242837,96242838,50,-,CGCTCCGTGTATTTGACAAGCTGAGTTGGACACTCCATGTGGTAGAGTGT,"Exon (F630028O10Rik-201/F630028O10Rik-201, exon 3 of 3)",20,96224308,96225727,1420,2,Gm9051-201,-17159,Vsig4-201,Vsig4,50552,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,668221,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10588,cg07980145,-0.00000196,0.00000119,-1.646070877,0.100762577,loss,ns,0.00000469,0.00000203,2.314820498,0.021275766,pos,ns,0.001357666,0.000593838,2.28625505,0.022913603,pos,ns,1.639906607,-0.00000878,0.0000204,-0.42984409,0.66760769,neg,ns,0.032281832,4931414P19Rik,4931414P19Rik_fiveUTR,14,54605888,54605937,54605888,54605889,50,-,CGAAGGTCGTATGGCTCTTTGTATTCGTGTGTGTGCAAAAAGGAGGACTC,Promoter (<=1kb),14,54583663,54605993,22331,2,4931414P19Rik-201,56,4931414P19Rik-201,4931414P19Rik,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,1,74359,ENSMUSG00000022179,conserved gene and region,14,54605888,54606150,263,*,263,34,0.714828897,1.059981034,0.129277567,2.47E-30,CpGisland,TRUE,NA,NRS
23792,cg10257214,-0.0000603,0.0000251,-2.404777329,0.016768373,loss,ns,-0.0000986,0.0000426,-2.314370218,0.021300767,neg,ns,0.052777361,0.012483942,4.227619898,0.0000311,pos,ns,4.507075952,-0.001915695,0.000429322,-4.462143068,0.0000114,neg,ns,0.536230122,Mbnl2,Mbnl2_Intron,14,120395563,120395612,120395611,120395612,50,+,TTGCATTCAGAATATTTTTTTCCTTCTCACCTATCCACAATGCAATGCCG,"Intron (Mbnl2-201/Mbnl2, intron 5 of 8)",14,120275669,120431697,156029,1,Mbnl2-201,119894,Mbnl2-201;Mbnl2-204;Mbnl2-206;Mbnl2-202;Mbnl2-203;Mbnl2-208;Mbnl2-210;Mbnl2-205,Mbnl2;Mbnl2;Mbnl2;Mbnl2;Mbnl2;Mbnl2;Mbnl2;Mbnl2,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,16,105559,ENSMUSG00000022139,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15501,cg08302546,0.00000818,0.00000223,3.669009469,0.000286542,gain,ns,-0.00000876,0.00000379,-2.314328296,0.021303096,neg,ns,-0.003404205,0.001109477,-3.068296661,0.002342884,neg,ns,2.630249208,0.0000275,0.0000382,0.721767852,0.470981263,pos,ns,0.940069752,Cpeb1,Cpeb1_Exon,7,81355893,81355942,81355941,81355942,50,+,TCGGCTGGACATCTTGAAATAATATTCACTCAGGCCATCTGGGCTCAGCG,"Exon (Cpeb1-201/Cpeb1, exon 8 of 12)",7,81347026,81454758,107733,2,Cpeb1-201,98816,Cpeb1-201;Cpeb1-203;Cpeb1-209;Cpeb1-205,Cpeb1;Cpeb1;Cpeb1;Cpeb1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,12877,ENSMUSG00000025586,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9813,cg25278465,0.0000799,0.0000066,12.09613352,7.50E-28,gain,yes,-0.000026,0.0000112,-2.314254088,0.021307219,neg,ns,0.004286158,0.00328696,1.303988625,0.193204883,pos,ns,0.713981901,-0.0000588,0.000113038,-0.520307169,0.603220882,neg,ns,0.120628861,Tmeff2,Tmeff2_fiveUTR,1,50927947,50927996,50927995,50927996,50,+,CATGGTGCTGTGGGAGTCCCCGCGGCAGTGCAGCAGCTGGACACTTTGCG,5' UTR,1,50909962,50979920,69959,1,Tmeff2-202,17985,Tmeff2-202;Tmeff2-201,Tmeff2;Tmeff2,0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,2,56363,ENSMUSG00000026109,conserved gene but different region,1,50927389,50928119,731,*,731,59,0.653898769,0.770642366,0.080711354,3.08E-39,CpGisland,TRUE,U3,Pr-B
7327,cg08549719,-0.00000141,0.00000115,-1.225955344,0.221145959,loss,ns,0.00000451,0.00000195,2.314121822,0.02131457,pos,ns,0.000641582,0.000570729,1.124145104,0.26182119,pos,ns,0.581995207,-0.00000743,0.0000196,-0.378621626,0.705228027,neg,ns,0.966286472,Rbm27,Rbm27_Exon,18,42313986,42314035,42314034,42314035,50,-,CTCGTGAACATGGTGCTGCTGCATCTGAGCGACTTCAGTTGGGGACACCG,"Exon (Rbm27-201/Rbm27, exon 9 of 20)",18,42275353,42341542,66190,1,Rbm27-201,38633,Rbm27-201;Rbm27-202;Rbm27-203;Rbm27-205,Rbm27;Rbm27;Rbm27;Rbm27,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,10,225432,ENSMUSG00000024491,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17754,cg01952154,0.000063,0.00000401,15.72525431,2.24E-41,gain,yes,-0.0000158,0.00000681,-2.313930296,0.021325218,neg,ns,0.001205533,0.001995408,0.604153522,0.546183453,pos,ns,0.262661461,0.0000303,0.0000686,0.440930604,0.659570579,pos,ns,0.922601572,Fto,Fto_Intron,8,91630480,91630529,91630480,91630481,50,+,CGCATGTGCTCCGCATCAGCCACCAGCTGTCTGACAGTGTGTTGCTATTG,"Intron (Fto-201/Fto, intron 8 of 8)",8,91313525,91668439,354915,1,Fto-201,316955,Fto-201;Fto-205,Fto;Fto,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,26,26383,ENSMUSG00000055932,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7804,cg25590275,0.0000131,0.00000614,2.132813001,0.033725416,gain,ns,-0.0000241,0.0000104,-2.313907548,0.021326483,neg,ns,-0.011233476,0.003054018,-3.678261236,0.000276768,neg,ns,3.557883466,0.000213537,0.000105027,2.033153284,0.0428887,pos,ns,0.805233823,Prdm1,Prdm1_Intergenic_downstream,10,44388981,44389030,44389029,44389030,50,-,CTGAGGATGATTATTAATTAATCAAAAACACTGACTTTTAACTTCCCACG,Distal Intergenic,10,44439667,44457210,17544,2,Prdm1-204,68229,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,4,12142,ENSMUSG00000038151,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21838,cg06426413,0.0000108,0.0000117,0.926518702,0.354897227,gain,ns,0.0000459,0.0000198,2.313788858,0.021333084,pos,ns,0.009332005,0.005808196,1.606696059,0.10913912,pos,ns,0.962019551,-0.000294655,0.000199743,-1.475169588,0.141181851,neg,ns,0.607165844,Lmo1,Lmo1_Intergenic_upstream,7,109241128,109241177,109241176,109241177,50,+,TTATATTTAATTGGACAATTATTCAAACTGAAAAACCTGCACAGGAAACG,Distal Intergenic,7,109138675,109175207,36533,2,Lmo1-202,-65921,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,34,66,109594,ENSMUSG00000036111,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24841,cg16101912,-0.0000031,0.0000021,-1.472152912,0.14199407,loss,ns,0.00000827,0.00000357,2.312809009,0.021387649,pos,ns,0.003296328,0.001046989,3.148388871,0.001801545,pos,ns,2.744354837,-0.0000925,0.000036,-2.568360997,0.010686166,neg,ns,0.946947242,Gm4410,Gm4410_Intron,3,128850365,128850414,128850365,128850366,50,-,CGGTGGCATGTTTTAGATGACATTTCAATTGTACGAGCAATTTGCATTCT,"Intron (Gm43824-201/Gm43824-201, intron 4 of 4)",3,128839836,128840521,686,1,Gm4410-201,10578,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,13,100043393,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21301,cg25533817,0.00000141,0.00000346,0.406364525,0.684755164,gain,ns,-0.0000136,0.00000588,-2.312636233,0.021397284,neg,ns,-0.004553124,0.001721204,-2.645312973,0.00857755,neg,ns,2.066636761,0.000101433,0.0000592,1.713619955,0.087598218,pos,ns,0.835936972,Pitpnc1,Pitpnc1_Exon,11,107216727,107216776,107216775,107216776,50,+,TTGCAAACTTTTATGTTGGTTTGTTCATGCATGTTTTTCTCGTATTCCCG,"Exon (Pitpnc1-202/Pitpnc1, exon 9 of 10)",11,107207892,107337637,129746,2,Pitpnc1-201,120861,Pitpnc1-201;Pitpnc1-202,Pitpnc1;Pitpnc1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,3,71795,ENSMUSG00000040430,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8021,cg11626658,0.0000159,0.0000117,1.358477907,0.175299807,gain,ns,0.0000459,0.0000199,2.312524529,0.021403514,pos,ns,-0.002739964,0.005817114,-0.471017791,0.637959305,neg,ns,0.195207024,0.000370576,0.00020005,1.852415462,0.064916604,pos,ns,0.281314323,Pax2,Pax2_Intergenic_upstream,19,44695682,44695731,44695682,44695683,50,-,CGGAGAGAGTGGACATTAAAAAAATAAAGAATAAGGGAATGAAAACAAGT,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-60363,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9840,cg08492177,-0.00000547,0.00000743,-0.736599198,0.461923181,loss,ns,0.0000292,0.0000126,2.312486126,0.021405657,pos,ns,0.01048197,0.00369557,2.836361081,0.004863377,pos,ns,2.313062028,-0.000380505,0.00012709,-2.993973719,0.002975358,neg,ns,0.878787812,Tbc1d5,Tbc1d5_Intron,17,51062987,51063036,51062987,51062988,50,+,CGACTTCCTGATGGGAACTTAAACATGTAATTTAGCTTCATCAAAGCAGT,"Intron (Tbc1d5-201/Tbc1d5, intron 2 of 21)",17,50733124,51179168,446045,2,Tbc1d5-201,116132,Tbc1d5-201;Tbc1d5-207;Tbc1d5-205;Tbc1d5-208;Tbc1d5-203;Tbc1d5-202;Tbc1d5-206;Tbc1d5-209,Tbc1d5;Tbc1d5;Tbc1d5;Tbc1d5;Tbc1d5;Tbc1d5;Tbc1d5;Tbc1d5,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,14,72238,ENSMUSG00000023923,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25725,cg08553185,0.00000286,0.00000996,0.287111004,0.774219142,gain,ns,0.0000391,0.0000169,2.312399264,0.021410503,pos,ns,-0.0000889,0.004955418,-0.017934131,0.985702938,neg,ns,0.006253949,-0.000111223,0.000170416,-0.65265469,0.514462601,neg,ns,0.820906686,Lhx9,Lhx9_threeUTR,1,138829942,138829991,138829990,138829991,50,-,ATTTATACAGCCAGAAGGACACCTTTAAAATCTATTAAATAGCCACTTCG,3' UTR,1,138825186,138842457,17272,2,Lhx9-201,12466,Lhx9-201;Lhx9-203;Lhx9-205;Lhx9-202;Lhx9-204;Lhx9-206;Lhx9-207,Lhx9;Lhx9;Lhx9;Lhx9;Lhx9;Lhx9;Lhx9,0;0;0;0;0;3668;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,12,16876,ENSMUSG00000019230,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26318,cg21280395,0.0000343,0.00000936,3.66205723,0.000294099,gain,ns,0.0000368,0.0000159,2.311970105,0.021434463,pos,ns,0.005642777,0.004660635,1.210731509,0.226920574,pos,ns,0.644126127,0.000174172,0.000160279,1.086683924,0.278020751,pos,ns,0.661639431,Gm14111,Gm14111_Intergenic_downstream,2,146723305,146723354,146723305,146723306,50,+,CGGTGGCAAATGCTGTATAAATGGAATGATGATCAGGCCCGCCTTGATAA,Distal Intergenic,2,146754707,146755705,999,2,Gm14111-201,32351,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,15,17,668918,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10087,cg06176348,0.000177594,0.0000119,14.97892792,1.54E-38,gain,yes,-0.0000466,0.0000201,-2.311742778,0.021447164,neg,ns,0.021450263,0.005900965,3.635043172,0.00032528,pos,ns,3.487742211,-0.000435404,0.000202934,-2.145548772,0.032685448,neg,ns,0.150580878,Gm28308,Gm28308_Intron,6,52164862,52164911,52164862,52164863,50,-,CGAATTGGCTGTCACATGATTGCTTCTGCCCAATGACAATTTGGGCTTTA,"Intron (Gm28308-201/Gm28308, intron 3 of 3)",6,52163359,52213339,49981,2,Gm28308-201,48428,Gm28308-201;Hoxa2-201;Hoxa3-201,Gm28308;Hoxa2;Hoxa3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,46,103,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25731,cg06857779,-0.0000201,0.00000485,-4.144903877,0.0000439,loss,ns,0.0000191,0.00000824,2.31119339,0.021477886,pos,ns,-0.001245966,0.002415377,-0.515847475,0.606328651,neg,ns,0.21729191,0.0000713,0.0000831,0.857826332,0.391651088,pos,ns,0.923303145,Il1rapl2,Il1rapl2_Exon,X,138845979,138846028,138845979,138845980,50,+,CGTGCTAACTCCAGACTATATTCTCAGACGGGGATGGAGTATTTTCGAAC,"Exon (Il1rapl2-202/Il1rapl2, exon 11 of 11)",20,137570608,138846946,1276339,1,Il1rapl2-202,1275371,Il1rapl2-202;Il1rapl2-201,Il1rapl2;Il1rapl2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,60367,ENSMUSG00000059203,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8398,cg01814663,-0.00000463,0.00000184,-2.518772399,0.012279465,loss,ns,0.00000721,0.00000312,2.31066194,0.021507642,pos,ns,0.000639386,0.000914573,0.699108803,0.485008227,pos,ns,0.314250894,-0.0000124,0.0000315,-0.394088921,0.693786339,neg,ns,0.954039798,Zeb2,Zeb2_Intron,2,45092845,45092894,45092893,45092894,50,-,TAAATTCTGTACCACCTGTTTTGGGCAAGACATCTTAGGCAGCGCGACCG,"Intron (Zeb2-212/Zeb2, intron 3 of 10)",2,44983632,45117395,133764,2,Zeb2-212,24501,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219;Zeb2-211,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24010,cg18524115,0.000158141,0.00000834,18.96393132,8.84E-54,gain,yes,-0.0000327,0.0000142,-2.310484418,0.021517589,neg,ns,-0.003251514,0.004150429,-0.783416323,0.433980786,neg,ns,0.362529498,0.0000982,0.000142733,0.68810756,0.491899617,pos,ns,0.816601789,Cux2,Cux2_Intron,5,121889602,121889651,121889602,121889603,50,-,CGGGCTGATGTAATTATACATTGACATAATTAACCCAGCAAGCGCATTAG,"Intron (Cux2-202/Cux2, intron 5 of 22)",5,121856366,122049851,193486,2,Cux2-202,160200,Cux2-202;Cux2-201;Cux2-210;Cux2-204;Cux2-206;Cux2-207;Cux2-205,Cux2;Cux2;Cux2;Cux2;Cux2;Cux2;Cux2,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,21,13048,ENSMUSG00000042589,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4455,cg15004491,-0.0000122,0.000012,-1.017082288,0.309907406,loss,ns,0.0000469,0.0000203,2.310174937,0.02153494,pos,ns,0.005948737,0.005953341,0.999226695,0.318464205,pos,ns,0.496939375,0.000348797,0.000204735,1.703650354,0.089448573,pos,ns,0.260179004,Sox4,Sox4_threeUTR,13,28949464,28949513,28949464,28949465,50,-,CGCAGTACATAGTGTCGCGAACTCAAATCGGCATTTAGATAGATCCAGTG,3' UTR,13,28948919,28953713,4795,2,Sox4-201,4200,Sox4-201,Sox4,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,8,12,20677,ENSMUSG00000076431,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20349,cg19615848,0.000131775,0.00000857,15.38385576,4.47E-40,gain,yes,-0.0000336,0.0000146,-2.309662762,0.021563683,neg,ns,0.006765665,0.004263294,1.586957048,0.11354181,pos,ns,0.944844187,-0.000084,0.000146614,-0.572724753,0.567246226,neg,ns,0.31352643,Hoxc5,Hoxc5_Exon,15,103009892,103009941,103009940,103009941,50,+,CACAGACCTCAATCGCTCAGGATTTTAGTTCTGAGCAGGGCAGGACTGCG,"Exon (Hoxc6-202/Hoxc6, exon 2 of 3)",15,102967443,103015676,48234,1,Hoxc5-202,42449,Hoxc5-202;Hoxc5-201;Hoxc6-202;Hoxc6-203;Hoxc6-201,Hoxc5;Hoxc5;Hoxc6;Hoxc6;Hoxc6,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,72,134,15424,ENSMUSG00000022485,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
16140,cg27480898,-0.0000144,0.00000468,-3.089047752,0.002189838,loss,ns,-0.0000183,0.00000795,-2.309540043,0.021570574,neg,ns,0.000372489,0.002327704,0.160024065,0.872966336,pos,ns,0.059002504,-0.000119487,0.00008,-1.492667341,0.136541287,neg,ns,0.927901977,Lhx1,Lhx1_threeUTR,11,84518412,84518461,84518460,84518461,50,+,TCTTTGCCTCGTGTAAACAACACCTTTTTACATACTAGCACAGTGAGCCG,3' UTR,11,84518284,84525535,7252,2,Lhx1-201,7074,Aatf-201;Aatf-204;Lhx1-201;Lhx1-204;Lhx1-203;Lhx1-202,Aatf;Aatf;Lhx1;Lhx1;Lhx1;Lhx1,0;0;0;0;3606;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,23,16869,ENSMUSG00000018698,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
23585,cg18581099,-0.00000331,0.00000287,-1.155192464,0.248901249,loss,ns,-0.0000112,0.00000487,-2.309445261,0.021575898,neg,ns,-0.003072532,0.001426088,-2.154517013,0.031969791,neg,ns,1.4952602,0.0000173,0.000049,0.353107159,0.724248092,pos,ns,0.893630308,Slc2a1,Slc2a1_threeUTR,4,119133470,119133519,119133470,119133471,50,-,CGCCTACCGCCAGCCCATCCTCATCGCTGTGGTGCTGCAGCTGTCCCAGC,3' UTR,4,119108711,119137983,29273,1,Slc2a1-201,24759,Slc2a1-201;Slc2a1-202;Slc2a1-203;Slc2a1-205;Slc2a1-204,Slc2a1;Slc2a1;Slc2a1;Slc2a1;Slc2a1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,2,20525,ENSMUSG00000028645,conserved gene and region,4,119133366,119133527,162,*,162,10,0.617283951,0.649038462,0.061728395,0.0000055,CpGisland,TRUE,U10,Tr-S
18698,cg23818165,-0.00000843,0.00000792,-1.064091105,0.288115574,loss,ns,0.0000311,0.0000135,2.309311434,0.021583418,pos,ns,-0.005083499,0.003941371,-1.289779652,0.198088544,neg,ns,0.70314064,0.000353987,0.000135543,2.611615928,0.009450026,pos,ns,0.615627267,Skap1,Skap1_Intron,11,96743204,96743253,96743252,96743253,50,+,CCGTCACATTGTTTCCAAATTGTGTTGTGGTGCCTGAGGCTGGTACTGCG,"Intron (Skap1-204/Skap1, intron 11 of 12)",11,96464593,96758941,294349,1,Skap1-204,278611,Skap1-204;Skap1-203;Skap1-201,Skap1;Skap1;Skap1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,40,46,78473,ENSMUSG00000057058,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
1845,cg05544360,0.00000395,0.0000073,0.54136308,0.588646183,gain,ns,-0.0000286,0.0000124,-2.308868994,0.021608294,neg,ns,-0.00433629,0.003631652,-1.194026952,0.233380288,neg,ns,0.631935828,-0.0000719,0.000124892,-0.576082585,0.564977353,neg,ns,0.829197255,Gli3,Gli3_Intron,13,15543999,15544048,15544047,15544048,50,-,TAAGAAATTCAGTCACAATAGAGAGCCTAGTTTTGAACATGTTTCACTCG,"Intron (Gli3-202/Gli3, intron 2 of 11)",13,15463235,15715091,251857,1,Gli3-202,80764,Gli3-202;Gli3-204;Gli3-203;Gli3-201,Gli3;Gli3;Gli3;Gli3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,19,21,14634,ENSMUSG00000021318,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15580,cg03698421,-0.000029,0.00000651,-4.456095134,0.0000117,loss,ns,0.0000255,0.0000111,2.308759684,0.021614444,pos,ns,0.000424913,0.003239838,0.131152447,0.895739785,pos,ns,0.047818136,-0.000115895,0.000111418,-1.040180593,0.299066585,neg,ns,0.902141565,Cetn3,Cetn3_Intergenic_downstream,13,81910092,81910141,81910140,81910141,50,+,TAATTAACTCCATCGTTGCCTCCTTCATTATGCTTGTAATGAGGTCACCG,Distal Intergenic,13,81791977,81793668,1692,1,Cetn3-204,118115,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,9,12626,ENSMUSG00000021537,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12306,cg10651886,0.0000207,0.0000264,0.785170596,0.4329532,gain,ns,0.000103377,0.0000448,2.308705034,0.021617519,pos,ns,0.043999226,0.013118121,3.354080018,0.00089515,pos,ns,3.048104372,-0.001326473,0.000451131,-2.940326619,0.003525313,neg,ns,0.381657015,Gm18541,Gm18541_Intergenic_upstream,9,63880817,63880866,63880817,63880818,50,-,CGTTTTCAAATGGGAATCATGCAAATGAGTATTTTAGCTATTCATTTGTT,Distal Intergenic,9,63898265,63898802,538,1,Gm18541-201,-17448,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,13,100417338,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
2391,cg19552877,0.0000938,0.00000805,11.66354947,2.62E-26,gain,yes,-0.0000316,0.0000137,-2.30867375,0.021619279,neg,ns,0.01244828,0.00400472,3.108402154,0.002055447,pos,ns,2.687093805,-0.000340313,0.000137722,-2.471012196,0.014010512,neg,ns,0.13893448,Tfap2b,Tfap2b_Exon,1,19234205,19234254,19234205,19234206,50,-,CGCTCACGGCCCTGCAGAACTATCTCACCGAGGCGCTCAAAGGCATGGAC,"Exon (Tfap2b-201/Tfap2b, exon 7 of 7)",1,19208914,19238576,29663,1,Tfap2b-201,25291,Tfap2b-201;Tfap2b-204;Tfap2b-202,Tfap2b;Tfap2b;Tfap2b,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,40,21419,ENSMUSG00000025927,conserved gene and region,1,19234070,19234239,170,*,170,15,0.647058824,0.866168478,0.088235294,6.13E-11,CpGisland,TRUE,U13,Hc-P
26569,cg11786975,0.0000581,0.0000102,5.707031889,2.69E-08,gain,yes,-0.0000399,0.0000173,-2.308655141,0.021620327,neg,ns,-0.003028871,0.005068228,-0.597619323,0.55053026,neg,ns,0.259218805,0.0000571,0.000174296,0.327578238,0.743451689,pos,ns,0.826345657,Casz1,Casz1_Intron,4,148922135,148922184,148922135,148922136,50,-,CGTCCCAAGGACACCCGCCATAATTAAGCGAGGCTTTCGGCCCCAGAAAG,"Intron (Casz1-201/Casz1, intron 4 of 15)",4,148804429,148945129,140701,1,Casz1-201,117706,Casz1-201;Casz1-202;Casz1-206,Casz1;Casz1;Casz1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,94,124,69743,ENSMUSG00000028977,mapped to different genes,4,148922073,148922173,101,*,101,10,0.673267327,0.956439394,0.099009901,6.91E-08,CpGisland,TRUE,NA,NRS
6449,cg05456246,-0.0000172,0.00000795,-2.167498372,0.030957819,loss,ns,0.0000312,0.0000135,2.30861297,0.0216227,pos,ns,0.016647528,0.00395796,4.206088458,0.000034,pos,ns,4.467884055,-0.000528455,0.000136114,-3.882447243,0.000126397,neg,ns,0.829336291,Zfp536,Zfp536_Intergenic_downstream,7,37312457,37312506,37312457,37312458,50,-,CGAGCCTATGACACTTTATAAAAAGAAGTAATCCAGGACAATCTCTAGGT,Distal Intergenic,7,37472135,37479986,7852,2,Zfp536-204,167529,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,112,243937,ENSMUSG00000043456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2239,cg12537145,-0.0000051,0.0000118,-0.432470291,0.66570033,loss,ns,-0.0000462,0.00002,-2.308453912,0.021631654,neg,ns,-0.011677489,0.005866363,-1.990584074,0.04740442,neg,ns,1.324181159,0.000234499,0.000201744,1.162362886,0.245982155,pos,ns,0.805593451,Gm30341,Gm30341_Intergenic_upstream,3,18731539,18731588,18731587,18731588,50,+,AAACTTCACACAAAGTGCCTGTTAACCCCTTGGCACCATAGCATCCCTCG,Distal Intergenic,3,18753077,18753365,289,1,Gm30341-201,-21489,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,17,23,102632201,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6967,cg05765439,0.00000854,0.00000996,0.857680401,0.39173156,gain,ns,0.0000391,0.0000169,2.307916425,0.021661936,pos,ns,0.008196742,0.004957186,1.653507189,0.099239933,pos,ns,1.003313536,-0.0000392,0.000170477,-0.230160264,0.818119041,neg,ns,0.689171672,Lsamp,Lsamp_Intron,16,40234605,40234654,40234653,40234654,50,-,TGGGAATGTATAAAACTCACCTTTATTGCTTCTTGCCATGAATTTACACG,"Intron (Lsamp-207/Lsamp, intron 1 of 2)",16,39984361,40979709,995349,1,Lsamp-207,250244,Lsamp-207;Lsamp-206;Lsamp-208;Lsamp-210;Lsamp-209,Lsamp;Lsamp;Lsamp;Lsamp;Lsamp,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,23,268890,ENSMUSG00000061080,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18681,cg27365371,-0.0000044,0.00000605,-0.728082453,0.4671127,loss,ns,-0.0000237,0.0000103,-2.307069566,0.021709724,neg,ns,0.000310973,0.003009503,0.103330503,0.917767481,pos,ns,0.037267335,-0.000274573,0.000103497,-2.652970982,0.008389655,neg,ns,0.730954696,Tenm4,Tenm4_Exon,7,96729407,96729456,96729455,96729456,50,+,GTATGAGATCACGGAGGACACAGCCAGCAGTTGGCCTGTGCCAACCGACG,"Exon (Tenm4-201/Tenm4, exon 11 of 33)",7,96171246,96908569,737324,1,Tenm4-201,558161,Tenm4-201;Tenm4-203;Tenm4-202;Tenm4-207,Tenm4;Tenm4;Tenm4;Tenm4,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,17,26,23966,ENSMUSG00000048078,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3899,cg13021971,0.00000403,0.00000373,1.081542085,0.280296665,gain,ns,0.0000146,0.00000633,2.307035989,0.021711621,pos,ns,0.003417793,0.001854678,1.842796415,0.066313407,pos,ns,1.178398658,-0.000105623,0.0000638,-1.655989907,0.098735705,neg,ns,0.911470311,5730522E02Rik,5730522E02Rik_Intron,11,25704594,25704643,25704642,25704643,50,-,AGCAATGAAGTGCAATGACAATTAAATTGTAACTGACCTACATGTTACCG,"Intron (5730522E02Rik-202/5730522E02Rik, intron 2 of 5)",11,25617668,26210569,592902,2,5730522E02Rik-202,505926,5730522E02Rik-202;5730522E02Rik-201;5730522E02Rik-208,5730522E02Rik;5730522E02Rik;5730522E02Rik,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,90,70626,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16070,cg26934211,0.000164346,0.0000171,9.635601937,2.16E-19,gain,yes,-0.0000668,0.000029,-2.306984559,0.021714526,neg,ns,0.046083463,0.008489022,5.428595042,0.000000115,pos,ns,6.940043758,-0.0000614,0.000291937,-0.210313673,0.833561029,neg,ns,0.623752907,Zfp407,Zfp407_Intron,18,84353380,84353429,84353428,84353429,50,+,TATATTATTGATCCAGCCAAGTCTCCACAATTATTCTTTAGAAGGAAACG,"Intron (Zfp407-201/Zfp407, intron 2 of 2)",18,84128027,84558425,430399,2,Zfp407-201,204996,Zfp407-201;Zfp407-202;Zfp407-203,Zfp407;Zfp407;Zfp407,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,32,240476,ENSMUSG00000048410,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26529,cg13945887,0.0000297,0.00000918,3.231858932,0.001362189,gain,ns,0.000036,0.0000156,2.30691733,0.021718324,pos,ns,0.013750893,0.004570917,3.008344648,0.00284203,pos,ns,2.546371382,-0.00035307,0.000157193,-2.246087752,0.025402359,neg,ns,0.582397374,Casz1,Casz1_Intron,4,148885912,148885961,148885960,148885961,50,+,TAATCAATCAAATTTGAGGCAGAAAATAGGTTTTGTCACGCCTGGTCCCG,"Intron (Casz1-201/Casz1, intron 2 of 15)",4,148804429,148945129,140701,1,Casz1-201,81483,Casz1-201;Casz1-202;Casz1-205,Casz1;Casz1;Casz1,0;0;-3420,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,94,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10879,cg16517134,-0.00000408,0.00000431,-0.947936678,0.343900046,loss,ns,-0.0000169,0.00000732,-2.306908253,0.021718837,neg,ns,-0.007581823,0.002144683,-3.535172364,0.000469662,neg,ns,3.328214726,0.000203156,0.0000738,2.754459281,0.006226229,pos,ns,0.883991323,Ralgapa1,Ralgapa1_Exon,12,55721467,55721516,55721515,55721516,50,+,TGGTGGCATTCTGTTCTGCCTCTGTGGGGAAACATTTGCCTTCGGCTTCG,"Exon (Ralgapa1-212/Ralgapa1, exon 17 of 40)",12,55602896,55820767,217872,2,Ralgapa1-211,99251,Ralgapa1-211;Ralgapa1-212;Ralgapa1-201;Ralgapa1-202;Ralgapa1-204;Ralgapa1-207;Ralgapa1-208,Ralgapa1;Ralgapa1;Ralgapa1;Ralgapa1;Ralgapa1;Ralgapa1;Ralgapa1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,15,56784,ENSMUSG00000021027,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11939,cg12469892,-0.000000584,0.00000612,-0.095398408,0.924060018,loss,ns,0.000024,0.0000104,2.3069045,0.021719049,pos,ns,-0.001629804,0.003045584,-0.535136759,0.592938947,neg,ns,0.226990022,0.000190535,0.000104737,1.819172227,0.069849762,pos,ns,0.801198152,Gm47241,Gm47241_Promoter,9,61756909,61756958,61756957,61756958,50,+,ACCTTTAATTTGTGCAAAGTATGCCTGGCTGCGCCTGGCACCAGCAGCCG,Promoter (6-7kb),9,61763084,61763442,359,1,Gm47241-201,-6126,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,6,,NA,mapped to different genes,9,61756940,61757158,219,*,219,20,0.643835616,0.897540984,0.091324201,9.42E-15,CpGisland,TRUE,U15,NS
134,cg14793277,0.0000313,0.00000577,5.432556065,0.000000113,gain,yes,-0.0000226,0.0000098,-2.306676898,0.021731913,neg,ns,-0.005456683,0.002869899,-1.901350073,0.058183243,neg,ns,1.235202074,0.000150592,0.0000987,1.525823846,0.128073308,pos,ns,0.848891446,Kdm2a,Kdm2a_Exon,19,4324710,4324759,4324758,4324759,50,+,ACGATCCCCGGATCTTGGCTTTCTCAACTTCAGACAGCTCCTTTTTGCCG,"Exon (Kdm2a-201/Kdm2a, exon 17 of 21)",19,4314419,4398285,83867,2,Kdm2a-201,73526,Kdm2a-201;Kdm2a-202;Kdm2a-213;Kdm2a-211;Kdm2a-207;Kdm2a-214;Kdm2a-212;Kdm2a-210,Kdm2a;Kdm2a;Kdm2a;Kdm2a;Kdm2a;Kdm2a;Kdm2a;Kdm2a,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,21,30,225876,ENSMUSG00000054611,conserved gene and region,19,4324711,4324995,285,*,285,19,0.621052632,0.696373457,0.066666667,1.66E-11,CpGisland,TRUE,U10,Tr-S
19130,cg03098892,0.00000164,0.00000244,0.672504199,0.501763716,gain,ns,0.00000957,0.00000415,2.306581698,0.021737296,pos,ns,0.001111958,0.001215948,0.914477907,0.361176514,pos,ns,0.442280498,-0.000130801,0.0000418,-3.127997605,0.001927163,neg,ns,0.024915101,Kcnk10,Kcnk10_fiveUTR,12,98574166,98574215,98574214,98574215,50,+,CCCAGTTCACCTGTTTTCTTGGCGTCTCGATTGGAAATTTCATTGCTTCG,5' UTR,12,98429437,98578310,148874,2,Kcnk10-202,4095,Kcnk10-202;Kcnk10-201;Kcnk10-203,Kcnk10;Kcnk10;Kcnk10,0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,3,72258,ENSMUSG00000033854,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
21524,cg18693313,0.000105594,0.0000103,10.21765169,2.58E-21,gain,yes,-0.0000405,0.0000176,-2.306567887,0.021738077,neg,ns,0.008288332,0.00514359,1.611390468,0.108112284,pos,ns,0.966124959,-0.000277501,0.000176888,-1.568800257,0.117714619,neg,ns,0.284244484,Zfhx3,Zfhx3_Intron,8,108101870,108101919,108101870,108101871,50,+,CGTGAGCATATGGATTGAGTCACAGCCTGAGATCAATGGAATTTGTGGAC,"Intron (Zfhx3-204/Zfhx3, intron 1 of 15)",8,107942644,108961630,1018987,1,Zfhx3-204,159226,Zfhx3-204;Zfhx3-207,Zfhx3;Zfhx3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,114,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25366,cg00002920,-0.000105685,0.0000141,-7.499286629,6.81E-13,loss,yes,0.0000552,0.0000239,2.305977851,0.021771464,pos,ns,-0.007794815,0.007014083,-1.11130912,0.267296473,neg,ns,0.573006772,0.000454825,0.000241214,1.885569721,0.060287866,pos,ns,0.648084503,Gm9341,Gm9341_Intergenic_downstream,7,136057334,136057383,136057382,136057383,50,+,CATAGTTTATTTTCTTAAAGTATTAATTTGTCAACAGCTTCCCTGCCTCG,Distal Intergenic,7,135952798,135953783,986,1,Gm9341-201,104536,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,27,28,668764,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25751,cg03480729,-0.00000243,0.00000155,-1.569049337,0.117656568,loss,ns,0.00000606,0.00000263,2.305644605,0.021790341,pos,ns,0.001057522,0.000769708,1.373926284,0.170457179,pos,ns,0.768384704,0.00000237,0.0000265,0.089435436,0.928793616,pos,ns,0.04075778,Ubr4,Ubr4_Exon,4,139380823,139380872,139380871,139380872,50,+,TGAAGGAGTTGCCGCAGCTGGTGGCCTCAGTCATCGAGAGGTACCGGGCG,"Exon (Ubr4-212/Ubr4, exon 1 of 106)",4,139352609,139469763,117155,1,Ubr4-210,28214,Emc1-205;Emc1-202;Emc1-201;Emc1-204;Ubr4-210;Ubr4-212;Ubr4-201;Ubr4-204,Emc1;Emc1;Emc1;Emc1;Ubr4;Ubr4;Ubr4;Ubr4,28236;28230;28213;21576;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,10,69116,ENSMUSG00000066036,conserved gene but different region,4,139380499,139381314,816,*,816,77,0.659313726,0.870671378,0.094362745,1.96E-56,CpGisland,TRUE,U1,Pr-A
13949,cg23576695,-0.0000287,0.00000606,-4.740027255,0.00000326,loss,ns,0.0000237,0.0000103,2.305202677,0.021815397,pos,ns,0.001618425,0.00301367,0.537028024,0.591633482,pos,ns,0.227947256,-0.0000718,0.00010364,-0.693009982,0.488822141,neg,ns,0.637128571,Chn1,Chn1_Exon,2,73659810,73659859,73659858,73659859,50,-,GGAGAACCCAGTTTCATTCCCAAGGCTGCTATCAATAAATCTTGCTGACG,"Exon (Chn1os1-201/Chn1os1-201, exon 2 of 2)",2,73610660,73775346,164687,2,Chn1-203,115487,Chn1-203;Chn1-210;Chn1-202;Chn1-209;Chn1-204;Chn1-213;Chn1-208;Chn1-206;Chn1-207,Chn1;Chn1;Chn1;Chn1;Chn1;Chn1;Chn1;Chn1;Chn1,0;0;0;0;0;0;0;-4752;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,4,108699,ENSMUSG00000056486,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2902,cg06100715,-0.00000285,0.00000232,-1.22589601,0.221168258,loss,ns,0.0000091,0.00000395,2.305193875,0.021815896,pos,ns,0.003271858,0.001156543,2.828997225,0.004973764,pos,ns,2.30331483,-0.000106254,0.0000398,-2.671493771,0.007950389,neg,ns,0.957165942,Lrmda,Lrmda_Intron,14,22037353,22037402,22037401,22037402,50,+,GTTTAATTGATTCACTTAGCATTTGAAACTGTCACGCATTAATAATTGCG,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,17641,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206,Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25953,cg18094982,0.000199492,0.0000158,12.61758265,9.73E-30,gain,yes,-0.0000619,0.0000269,-2.304440926,0.021858644,neg,ns,0.064695627,0.007869102,8.221475417,5.57E-15,pos,yes,14.25428166,-0.00264759,0.000270618,-9.78350266,7.11E-20,neg,yes,0.26469392,Slco1c1,Slco1c1_fiveUTR,6,141524375,141524424,141524375,141524376,50,+,CGTGTGGCCTTAAACTTGCAGCAAATTGCAAAGAAATGGCTCAAAAGCTT,Promoter (<=1kb),6,141524386,141569720,45335,1,Slco1c1-202,0,Slco1c1-205;Slco1c1-202;Slco1c1-201;Slco1c1-206;Slco1c1-203,Slco1c1;Slco1c1;Slco1c1;Slco1c1;Slco1c1,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,2,58807,ENSMUSG00000030235,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22437,cg07692115,-0.0000354,0.0000105,-3.38276566,0.000809682,loss,ns,0.000041,0.0000178,2.304403049,0.021860796,pos,ns,0.023934247,0.005207545,4.596071088,0.00000627,pos,ns,5.202406391,-0.000897695,0.000179087,-5.012619329,0.000000905,neg,yes,0.189720267,Fam222a,Fam222a_Intergenic_upstream,5,114537846,114537895,114537894,114537895,50,+,CTTTTGCCAAATGTCACCCTGCTCTTGATCAAAATCCATCCTGCAGCCCG,Distal Intergenic,5,114568016,114613220,45205,1,Fam222a-201,-30121,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,16,433940,ENSMUSG00000041930,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
22788,cg01587718,-0.000000144,0.00000369,-0.039109309,0.968828413,loss,ns,-0.0000144,0.00000627,-2.304269804,0.021868369,neg,ns,-0.008463349,0.001835956,-4.609778159,0.0000059,neg,ns,5.229164904,0.000114037,0.0000631,1.806138563,0.071866473,pos,ns,0.89165649,Gadl1,Gadl1_Exon,9,115948664,115948713,115948664,115948665,50,-,CGTATGAGGTGTCCCCAGTGTTTCTGTTAGTGGAAGAAGCGGTTCTGAAG,"Exon (Gadl1-202/Gadl1, exon 5 of 15)",9,115909455,116041216,131762,1,Gadl1-202,39209,Gadl1-202;Gadl1-201;Gadl1-203,Gadl1;Gadl1;Gadl1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,73748,ENSMUSG00000056880,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17729,cg26765160,0.00000239,0.00000292,0.818607455,0.413639232,gain,ns,-0.0000114,0.00000495,-2.304108801,0.021877523,neg,ns,-0.005761897,0.001451571,-3.969420983,0.0000896,neg,ns,4.047733456,0.000140453,0.0000499,2.813600484,0.005211956,pos,ns,0.79626643,Lrp4,Lrp4_Exon,2,91511555,91511604,91511555,91511556,50,+,CGGGATCATGTATGCATGAAGACAGACACGGTGTCCATCCAGGCCAGCTC,"Exon (Lrp4-201/Lrp4, exon 38 of 38)",2,91457511,91513779,56269,1,Lrp4-201,54044,Lrp4-201,Lrp4,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,7,228357,ENSMUSG00000027253,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6593,cg06254227,-0.000000257,0.00000354,-0.072553798,0.942207982,loss,ns,-0.0000139,0.00000601,-2.30406175,0.021880198,neg,ns,-0.00138118,0.001761175,-0.784237487,0.433499603,neg,ns,0.363011296,-0.00000101,0.0000606,-0.016703892,0.986683587,neg,ns,0.867479178,Zfp536,Zfp536_Intergenic_upstream,7,37815735,37815784,37815735,37815736,50,-,CGTTACGATGATTCATTATGGAAGAACGTGTCCCATGCAAATGAACAGAC,Distal Intergenic,7,37569629,37773641,204013,2,Zfp536-208,-42143,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,112,243937,ENSMUSG00000043456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8361,cg24264009,-0.0000263,0.0000071,-3.711872564,0.00024384,loss,ns,0.0000278,0.0000121,2.303856206,0.021891891,pos,ns,0.011392758,0.003532481,3.225143052,0.001393476,pos,ns,2.855900449,-0.000423912,0.000121482,-3.489514373,0.000554017,neg,ns,0.839387369,Zeb2,Zeb2_Intron,2,45047718,45047767,45047718,45047719,50,+,CGCAGGTCTGTCAGATTGCTAGAAATTACATTCTGCTCTGACTAACCTCT,"Intron (Zeb2-212/Zeb2, intron 3 of 10)",2,44983632,45117395,133764,2,Zeb2-212,69628,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-218;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26075,cg23493749,-0.0000214,0.00000627,-3.409213022,0.000737684,loss,ns,0.0000245,0.0000106,2.303615006,0.021905618,pos,ns,0.005555731,0.00311822,1.781699531,0.075777095,pos,ns,1.120462048,-0.000271114,0.000107235,-2.528217816,0.011960593,neg,ns,0.59522903,Sox5,Sox5_Intergenic_downstream,6,143697967,143698016,143698015,143698016,50,+,CAGCACCAATCAGAATGGCTGCCAGTTGTTATTCTTCTTCACAACTGGCG,Distal Intergenic,6,143861441,143947088,85648,2,Sox5-206,249072,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,71,20678,ENSMUSG00000041540,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12049,cg27527751,0.00000155,0.00000171,0.902903585,0.367278105,gain,ns,0.0000067,0.00000291,2.303591904,0.021906933,pos,ns,0.002379031,0.00085233,2.791208388,0.005576874,pos,ns,2.253609157,-0.0000645,0.0000293,-2.202166507,0.028389603,neg,ns,0.944243665,Efna5,Efna5_Intergenic_downstream,17,62568906,62568955,62568906,62568907,50,+,CGTCTAATGAAACAATTAGGGCTTGACAGTTTAAATATGCTATTTTGTTC,Distal Intergenic,17,62607319,62881144,273826,2,Efna5-202,312189,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,21,13640,ENSMUSG00000048915,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12402,cg13665094,0.00000236,0.00000249,0.94731564,0.344215811,gain,ns,-0.00000973,0.00000423,-2.303589785,0.021907054,neg,ns,-0.002039396,0.001237825,-1.647564437,0.100455267,neg,ns,0.998027288,0.0000249,0.0000426,0.583937075,0.559687296,pos,ns,0.043959901,Fign,Fign_Promoter,2,64097380,64097429,64097380,64097381,50,+,CGAGATTGTAATTTAACCTCAACTTTTTGTGTGTGTGCAAGATTCTTATT,Promoter (<=1kb),2,63971507,64098012,126506,2,Fign-203,583,Fign-203;Fign-201;Fign-202;Fign-204,Fign;Fign;Fign;Fign,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,12,84,60344,ENSMUSG00000075324,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
2654,cg26625831,0.00000434,0.00000583,0.744197133,0.457320949,gain,ns,-0.0000228,0.00000991,-2.303583287,0.021907424,neg,ns,0.007096628,0.002902065,2.445372161,0.015026391,pos,ns,1.823145301,-0.000457909,0.0000998,-4.588186889,0.0000065,neg,ns,0.69869184,Vcl,Vcl_Exon,14,21022035,21022084,21022035,21022036,50,+,CGGATCCTGGGAGCTGTGGCCAAGGTCAGAGAAGCCTTCCAACCTCAGGA,"Exon (Vcl-201/Vcl, exon 17 of 21)",14,20929398,21033676,104279,1,Vcl-201,92637,Vcl-201;Vcl-202,Vcl;Vcl,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,8,22330,ENSMUSG00000021823,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15687,cg04353073,-0.00000507,0.0000149,-0.340044636,0.734053203,loss,ns,0.0000584,0.0000254,2.302994047,0.021940994,pos,ns,-0.003690389,0.007426804,-0.496901389,0.619610793,neg,ns,0.207881026,-0.0000115,0.000255407,-0.045057792,0.964090255,neg,ns,0.508119298,Gm14741,Gm14741_Intergenic_upstream,X,82815632,82815681,82815632,82815633,50,-,CGTTTTGCCAAGTTGATGTCGACCCAGCTGGTCTATGATTTCTCGCTTGA,Distal Intergenic,20,82757430,82758438,1009,2,Gm14741-201,-57243,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,11,100415954,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15499,cg05671448,-0.00000207,0.0000018,-1.149936801,0.251056242,loss,ns,0.00000703,0.00000305,2.302940644,0.021944038,pos,ns,0.001292311,0.000894862,1.444145984,0.149707806,pos,ns,0.824755555,-0.0000276,0.0000308,-0.89629545,0.370790462,neg,ns,0.962703875,Cpeb1,Cpeb1_Exon,7,81355885,81355934,81355885,81355886,50,+,CGCATCCTTCGGCTGGACATCTTGAAATAATATTCACTCAGGCCATCTGG,"Exon (Cpeb1-201/Cpeb1, exon 8 of 12)",7,81347026,81454758,107733,2,Cpeb1-201,98824,Cpeb1-201;Cpeb1-203;Cpeb1-209;Cpeb1-205,Cpeb1;Cpeb1;Cpeb1;Cpeb1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,12877,ENSMUSG00000025586,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21084,cg07800922,-0.00000223,0.00000197,-1.132744671,0.258196838,loss,ns,0.00000772,0.00000335,2.302711594,0.021957101,pos,ns,0.001769301,0.000981793,1.802112019,0.072499109,pos,ns,1.139667332,-0.0000577,0.0000338,-1.708747161,0.088498694,neg,ns,0.947759844,Gm3191,Gm3191_Intergenic_upstream,12,106389604,106389653,106389604,106389605,50,-,CGACTCCCTTGATAAATGGGACTTCCAGACCACACTTTATTGAGTCTCTG,Distal Intergenic,12,106459150,106459495,346,1,Gm3191-201,-69546,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,13,100041191,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U14,Hc-H
9238,cg14940505,0.00011804,0.0000091,12.97618922,4.74E-31,gain,yes,-0.0000356,0.0000155,-2.302547832,0.021966445,neg,ns,0.006791128,0.004527494,1.49997498,0.13463861,pos,ns,0.870830379,0.0000184,0.0001557,0.118173315,0.906006867,pos,ns,0.624722226,Cadm1,Cadm1_Exon,9,47829383,47829432,47829383,47829384,50,+,CGGCGACGACAGAACCAGCAGTTCACGGTTGGTATCACATTACTGTTTAT,"Exon (Cadm1-204/Cadm1, exon 8 of 10)",9,47530173,47853385,323213,1,Cadm1-204,299210,Cadm1-204;Cadm1-209;Cadm1-206;Cadm1-202;Cadm1-203;Cadm1-211;Cadm1-201,Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,13,77,54725,ENSMUSG00000032076,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21516,cg13604976,-0.0000038,0.00000325,-1.167858249,0.243761365,loss,ns,0.0000127,0.00000553,2.302479401,0.021970351,pos,ns,0.002973556,0.001619019,1.836640718,0.067220277,pos,ns,1.172499702,-0.0000876,0.0000557,-1.573596605,0.116600739,neg,ns,0.944777302,Mtf2,Mtf2_Exon,5,108080814,108080863,108080862,108080863,50,+,TCTCTAAACAGAGACTCTACAGGGGCAGGTAATTCACTGGTCCACAAGCG,"Exon (Mtf2-206/Mtf2, exon 3 of 17)",5,108065674,108107163,41490,1,Mtf2-206,15140,Mtf2-206;Mtf2-203;Mtf2-209;Mtf2-205;Mtf2-214;Mtf2-207;Mtf2-210;Mtf2-201;Mtf2-213;Mtf2-202;Mtf2-212;Mtf2-211;Mtf2-215,Mtf2;Mtf2;Mtf2;Mtf2;Mtf2;Mtf2;Mtf2;Mtf2;Mtf2;Mtf2;Mtf2;Mtf2;Mtf2,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,7,17765,ENSMUSG00000029267,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24432,cg02432171,0.0000949,0.00000763,12.43438962,4.51E-29,gain,yes,-0.0000298,0.000013,-2.302363474,0.021976968,neg,ns,0.012780633,0.003796913,3.366059088,0.000858485,pos,ns,3.06626747,-0.000626936,0.000130576,-4.801329328,0.00000246,neg,ns,0.524121832,Csf3r,Csf3r_Intergenic_upstream,4,125944943,125944992,125944943,125944944,50,+,CGGTAAGTTGTGTAAATATTGTGTCTTTTATTGTTTGGCCGATGGCAAGA,Distal Intergenic,4,126024550,126044440,19891,1,Csf3r-202,-79558,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,7,12986,ENSMUSG00000028859,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1814,cg04448212,-0.00000725,0.00000462,-1.569490102,0.117553898,loss,ns,0.0000181,0.00000785,2.30226253,0.021982732,pos,ns,0.003963177,0.002298644,1.724137107,0.085679995,pos,ns,1.067120568,-0.00013034,0.0000791,-1.648828677,0.100195728,neg,ns,0.913890726,Foxp2,Foxp2_threeUTR,6,15405573,15405622,15405573,15405574,50,-,CGAACGTCTTCAAGCAATGATGACCCACTTGCACATGCGACCCTCAGAGC,3' UTR,6,14901349,15441977,540629,1,Foxp2-207,504224,Foxp2-207;Foxp2-213;Foxp2-205;Foxp2-204;Foxp2-201;Foxp2-209;Foxp2-202;Foxp2-206,Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,10,65,114142,ENSMUSG00000029563,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16710,cg00424048,0.0000311,0.0000133,2.332609686,0.020308389,gain,ns,0.0000522,0.0000227,2.301889134,0.022004063,pos,ns,0.015135477,0.006638703,2.279884691,0.023293518,pos,ns,1.63276491,-0.0000578,0.000228304,-0.253213202,0.800271302,neg,ns,0.329380504,Gpatch2l,Gpatch2l_Intergenic_upstream,12,86214485,86214534,86214533,86214534,50,+,AGAATTACTTAACCCTGACCCGTGTATTAGGGGCCTGTATTAATGCCGCG,Distal Intergenic,12,86241858,86291784,49927,1,Gpatch2l-204,-27324,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,13,17,70373,ENSMUSG00000021254,conserved gene but different region,12,86214265,86214574,310,*,310,23,0.54516129,1.024719747,0.074193548,7.83E-15,CpGisland,TRUE,U13,Hc-P
7759,cg16081302,0.0000334,0.00000567,5.895711764,9.74E-09,gain,yes,-0.0000222,0.00000964,-2.301823008,0.022007843,neg,ns,0.004066646,0.002823487,1.440292092,0.150793933,pos,ns,0.821616131,-0.000146675,0.0000971,-1.510568024,0.131917164,neg,ns,0.792002531,Gm27036,Gm27036_Exon,13,44186184,44186233,44186232,44186233,50,+,CCTATTAGACATTGCTAATTAGAGCTCTCAGACATTAATCAAATACCACG,"Exon (A330076C08Rik-201/A330076C08Rik-201, exon 3 of 3)",13,44438834,44439813,980,2,Gm27036-201,253580,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19001,cg16180437,0.00000015,0.00000118,0.127082565,0.898957441,gain,ns,0.00000463,0.00000201,2.301627397,0.022019027,pos,ns,0.001172407,0.000589348,1.989326894,0.047543669,pos,ns,1.322907308,-0.0000337,0.0000203,-1.660638731,0.097797079,neg,ns,0.976116333,Med1,Med1_Exon,11,98158019,98158068,98158067,98158068,50,-,TTTAAGAAGGTTCATGAGCATCGGGTGGTTCTTGGTGTTGCCGGCCATCG,"Exon (Med1-203/Med1, exon 17 of 17)",11,98152154,98193260,41107,2,Med1-202,35192,Med1-202;Med1-203;Med1-204;Med1-201;Med1-207,Med1;Med1;Med1;Med1;Med1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,13,19014,ENSMUSG00000018160,conserved gene but different region,11,98158040,98158130,91,*,91,8,0.648351648,0.912280702,0.087912088,0.0000058,CpGisland,TRUE,U10,Tr-S
4622,cg00540706,-0.00000238,0.00000124,-1.911321037,0.05688531,loss,ns,0.00000486,0.00000211,2.301571072,0.022022248,pos,ns,0.001934115,0.000618591,3.12664749,0.001935759,pos,ns,2.713148761,-0.0000525,0.0000213,-2.468164298,0.014120259,neg,ns,0.962924488,Mecom,Mecom_threeUTR,3,29980903,29980952,29980903,29980904,50,-,CGCTTATGACGGCAAAGGTTTGAAAACTGAGTATAGGATTTATGGCAGAC,3' UTR,3,29951296,30013156,61861,2,Mecom-206,32204,Mecom-206;Mecom-212;Mecom-202;Mecom-203;Mecom-210;Mecom-215;Mecom-204;Mecom-213;Mecom-207;Mecom-208;Mecom-205;Mecom-216,Mecom;Mecom;Mecom;Mecom;Mecom;Mecom;Mecom;Mecom;Mecom;Mecom;Mecom;Mecom,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,10,80,14013,ENSMUSG00000027684,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16794,cg16437066,0.000118715,0.000011,10.82569906,2.22E-23,gain,yes,-0.0000429,0.0000186,-2.301406544,0.022031659,neg,ns,-0.004282231,0.005457925,-0.78458964,0.433293345,neg,ns,0.363217981,0.000153735,0.000187698,0.819058812,0.413382072,pos,ns,0.681788447,Lrba,Lrba_Exon,3,86539997,86540046,86539997,86539998,50,+,CGATGATGATACTCTGTCATCCGTGGATGAGAAAGATTTAGAGAATCTTG,"Exon (Lrba-202/Lrba, exon 39 of 51)",3,86224680,86746712,522033,1,Lrba-202,315317,Lrba-202;Lrba-204;Lrba-201;Lrba-208;Lrba-203,Lrba;Lrba;Lrba;Lrba;Lrba,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,17,45,80877,ENSMUSG00000028080,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
16871,cg13832595,-0.00000737,0.00000414,-1.78100067,0.07589144,loss,ns,0.0000162,0.00000703,2.301377343,0.02203333,pos,ns,0.00532094,0.002059807,2.58322273,0.010246041,pos,ns,1.989443913,-0.000166564,0.0000708,-2.351377936,0.019329781,neg,ns,0.933678041,Ythdc1,Ythdc1_threeUTR,5,86830558,86830607,86830558,86830559,50,+,CGACCAGAAGATTATGATATTCATAACAGCAGAAAGAAACCAAGGATTGA,3' UTR,5,86804221,86836654,32434,1,Ythdc1-202,26337,Ythdc1-202;Ythdc1-203;Ythdc1-208;Ythdc1-201;Ythdc1-207;Ythdc1-206;Ythdc1-205;Ythdc1-204,Ythdc1;Ythdc1;Ythdc1;Ythdc1;Ythdc1;Ythdc1;Ythdc1;Ythdc1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,12,17,231386,ENSMUSG00000035851,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19920,cg06628615,0.00000719,0.00000559,1.286307847,0.199295488,gain,ns,-0.0000218,0.00000949,-2.300892861,0.022061067,neg,ns,-0.003962571,0.002780473,-1.425142582,0.155122014,neg,ns,0.809326566,-0.000017,0.0000956,-0.178221111,0.858665738,neg,ns,0.886125901,Ogt,Ogt_Exon,X,101654091,101654140,101654091,101654092,50,-,CGCACCGAAAAGTCACATGATGAGAAATATGGTAACGGGTTTGTAACTGC,"Exon (Ogt-205/Ogt, exon 5 of 5)",20,101640060,101682940,42881,1,Ogt-202,14031,Ogt-202;Ogt-206;Ogt-201;Ogt-205;Ogt-204;Ogt-207;Ogt-203,Ogt;Ogt;Ogt;Ogt;Ogt;Ogt;Ogt,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,32,33,108155,ENSMUSG00000034160,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2345,cg10071691,0.0000797,0.00000743,10.72670338,4.86E-23,gain,yes,-0.0000291,0.0000126,-2.300695693,0.022072364,neg,ns,0.009330566,0.003699636,2.522022418,0.012168902,pos,ns,1.914748601,-0.000276587,0.00012723,-2.173907059,0.030468494,neg,ns,0.0874071,Tfap2d,Tfap2d_Exon,1,19104367,19104416,19104367,19104368,50,-,CGTCACGACGGATCAAACAGCTACCGTTTGATGCAGCTTGGCTGTCTGGA,"Exon (Tfap2d-201/Tfap2d, exon 2 of 8)",1,19103022,19166346,63325,1,Tfap2d-201,1345,Tfap2d-201;Tfap2d-202,Tfap2d;Tfap2d,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,23,226896,ENSMUSG00000042596,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
2844,cg17499466,0.000000778,0.00000619,0.125665793,0.900077939,gain,ns,0.0000242,0.0000105,2.300573075,0.022079392,pos,ns,-0.001893942,0.003079905,-0.614935401,0.539048497,neg,ns,0.26837216,0.000208074,0.000105918,1.964491524,0.050366134,pos,ns,0.854503484,Zfp503,Zfp503_Intergenic_downstream,14,21967730,21967779,21967730,21967731,50,+,CGAGCTGATTAAATTGTAAGGCCTTGCCTCATTTCATGCTATTTGGTTTA,Distal Intergenic,14,21983959,21989601,5643,2,Zfp503-201,21822,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,27,218820,ENSMUSG00000039081,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20055,cg09008979,-0.00000468,0.00000514,-0.910226849,0.363410066,loss,ns,0.0000201,0.00000873,2.299360697,0.022148985,pos,ns,0.007182836,0.002558884,2.807018408,0.005316906,pos,ns,2.274341027,-0.0000931,0.000088,-1.058476557,0.290662301,neg,ns,0.117150556,Sp7,Sp7_Exon,15,102366997,102367046,102366997,102366998,50,-,CGCTGCTGAGGGAAGGAACAGGAGGGAAAAGGAACAAACCCCAAACCACT,Promoter (<=1kb),15,102366902,102367182,281,2,Sp7-203,136,Sp7-201;Sp7-202;Sp7-203,Sp7;Sp7;Sp7,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,10,170574,ENSMUSG00000060284,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
17006,cg08797698,0.00000635,0.0000093,0.682545275,0.495403933,gain,ns,-0.0000363,0.0000158,-2.2993397,0.022150192,neg,ns,-0.007128594,0.004628514,-1.540147211,0.124544575,neg,ns,0.904675185,0.000388186,0.000159174,2.438749495,0.01529916,pos,ns,0.849132703,Zfp423,Zfp423_Intron,8,87836926,87836975,87836974,87836975,50,+,TTGCTCAGTGAAGTGTTTAGGTGCATGCACAAGGCGGGCCTTTGGAGACG,"Intron (Zfp423-202/Zfp423, intron 3 of 7)",8,87661810,87959595,297786,2,Zfp423-202,122620,Zfp423-202;Zfp423-201;Zfp423-207;Zfp423-205;Zfp423-204,Zfp423;Zfp423;Zfp423;Zfp423;Zfp423,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,42,53,94187,ENSMUSG00000045333,conserved gene and region,8,87836960,87837175,216,*,216,15,0.634259259,0.691421255,0.069444444,1.93E-09,CpGisland,TRUE,U15,NS
4316,cg16333249,-0.0000311,0.0000105,-2.96015227,0.003312071,loss,ns,0.000041,0.0000178,2.298995172,0.022170005,pos,ns,0.006459521,0.005222457,1.236873871,0.217070092,pos,ns,0.66340001,-0.000107978,0.0001796,-0.601213092,0.548137427,neg,ns,0.224488129,Opcml,Opcml_Intron,9,28336943,28336992,28336943,28336944,50,-,CGTGCAGCAGTAAGGAAAGTGCTTTAACCACAAGGCTGGTGTCCTGATGA,"Intron (Opcml-202/Opcml, intron 1 of 7)",9,27790947,28925410,1134464,1,Opcml-202,545996,Opcml-202,Opcml,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,12,330908,ENSMUSG00000062257,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8625,cg19702779,-0.00000223,0.00000415,-0.536769665,0.591811739,loss,ns,0.0000162,0.00000704,2.298837269,0.02217909,pos,ns,-0.001651282,0.002063591,-0.800198224,0.42420874,neg,ns,0.372420388,0.000273401,0.000071,3.852519658,0.000142086,pos,ns,0.079905739,Lin28b,Lin28b_Intron,10,45470327,45470376,45470375,45470376,50,-,AATCGCCATTTCATCTATGCTGACATCAAAATAATTTATGAATGAACACG,"Intron (Lin28b-203/Lin28b, intron 1 of 3)",10,45418363,45486395,68033,2,Lin28b-203,16019,Lin28b-201;Lin28b-203;Lin28b-202,Lin28b;Lin28b;Lin28b,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,5,380669,ENSMUSG00000063804,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
13398,cg23474846,0.000242896,0.0000233,10.4192391,5.42E-22,gain,yes,-0.000091,0.0000396,-2.29843321,0.022202355,neg,ns,0.017594086,0.011602738,1.516373562,0.130443946,pos,ns,0.884576072,-0.000508219,0.000399017,-1.273676458,0.203732242,neg,ns,0.063806965,Nr2f2,Nr2f2_Exon,7,70360011,70360060,70360011,70360012,50,-,CGCTGCGCTTGAAGAAGCTCTTGCAGCCCTCGCACGTGAACTGGCCGTAG,Promoter (<=1kb),7,70351944,70360593,8650,2,Nr2f2-201,533,Nr2f2-201;Nr2f2-203;Nr2f2-202;Nr2f2-205;Nr2f2-204;Nr2f2-206,Nr2f2;Nr2f2;Nr2f2;Nr2f2;Nr2f2;Nr2f2,0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,24,69,11819,ENSMUSG00000030551,conserved gene and region,7,70359750,70360467,718,*,718,76,0.703342618,0.857367313,0.105849582,8.30E-60,CpGisland,TRUE,U1,Pr-A
11486,cg14719106,-0.0000012,0.0000014,-0.858393706,0.391338309,loss,ns,0.00000546,0.00000238,2.298336655,0.022207917,pos,ns,0.002548609,0.000695972,3.661940803,0.000294227,pos,ns,3.531317579,-0.0000691,0.0000239,-2.88593763,0.004176352,neg,ns,0.967488043,Fam126b,Fam126b_threeUTR,1,58529379,58529428,58529379,58529380,50,+,CGATCAGCCTACGATGGATTGCACATCACCCAAGGAGAAAGGAAGGCATG,3' UTR,1,58522806,58586323,63518,2,Fam126b-207,56895,Fam126b-207;Fam126b-202;Fam126b-208;Fam126b-201,Fam126b;Fam126b;Fam126b;Fam126b,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,3,213056,ENSMUSG00000038174,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15370,cg21317790,0.0000347,0.0000038,9.135813614,8.68E-18,gain,yes,-0.0000148,0.00000646,-2.298331848,0.022208194,neg,ns,0.001545773,0.001892205,0.816916218,0.414603658,pos,ns,0.38236687,-0.0000372,0.0000651,-0.571840414,0.5678445,neg,ns,0.091093231,Galnt16,Galnt16_Exon,12,80519207,80519256,80519207,80519208,50,+,CGTAGCCTGGATCCTGGGCACTTTCTACTACTTATGGCAGGACAACCGAG,Promoter (<=1kb),12,80518277,80603892,85616,1,Galnt16-206,930,Galnt16-206;Galnt16-204;Galnt16-201,Galnt16;Galnt16;Galnt16,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,7,108760,ENSMUSG00000021130,conserved gene and region,12,80519068,80519208,141,*,141,18,0.716312057,1.017642342,0.127659575,4.37E-16,CpGisland,TRUE,U3,Pr-B
6080,cg08187769,-0.00000356,0.00000243,-1.469341821,0.142754178,loss,ns,0.00000947,0.00000412,2.298092517,0.022221987,pos,ns,0.003362635,0.001206999,2.785945991,0.005665929,pos,ns,2.246728908,-0.0000875,0.0000415,-2.107680415,0.035861294,neg,ns,0.961744791,Kpna1,Kpna1_Exon,16,36000211,36000260,36000259,36000260,50,+,TTTCGCCTGAAAAGTTACAAGAACAAATCTCTGAATCCCGATGAGATGCG,Promoter (<=1kb),16,36000253,36021645,21393,1,Kpna1-210,0,Kpna1-203;Kpna1-201;Kpna1-208;Kpna1-209;Kpna1-205;Kpna1-207;Kpna1-210,Kpna1;Kpna1;Kpna1;Kpna1;Kpna1;Kpna1;Kpna1,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,5,16646,ENSMUSG00000022905,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25749,cg07882711,-0.00000414,0.00000145,-2.851306738,0.004646156,loss,ns,0.00000567,0.00000247,2.297908237,0.022232612,pos,ns,0.000969246,0.00072315,1.340311754,0.181125486,pos,ns,0.742020436,0.00000674,0.0000249,0.270950083,0.786609746,pos,ns,0.049436762,Ubr4,Ubr4_Exon,4,139380809,139380858,139380857,139380858,50,-,CTCCGCCTTCGAGATGAAGGAGTTGCCGCAGCTGGTGGCCTCAGTCATCG,"Exon (Ubr4-212/Ubr4, exon 1 of 106)",4,139352609,139469763,117155,1,Ubr4-210,28200,Emc1-205;Emc1-202;Emc1-201;Emc1-204;Ubr4-210;Ubr4-212;Ubr4-201;Ubr4-204,Emc1;Emc1;Emc1;Emc1;Ubr4;Ubr4;Ubr4;Ubr4,28222;28216;28199;21562;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,10,69116,ENSMUSG00000066036,conserved gene and region,4,139380499,139381314,816,*,816,77,0.659313726,0.870671378,0.094362745,1.96E-56,CpGisland,TRUE,U1,Pr-A
935,cg17711602,-0.0000118,0.00000858,-1.373428037,0.170611777,loss,ns,0.0000335,0.0000146,2.297738271,0.022242416,pos,ns,0.003952333,0.004269678,0.925674761,0.355335074,pos,ns,0.449361923,0.000051,0.000146834,0.347152183,0.728712547,pos,ns,0.094085891,Gata3,Gata3_Promoter,2,9892450,9892499,9892450,9892451,50,+,CGTTTGCAAATTCCTATCAATTATTACGTGATGGGAAAAAATCCTATCTG,Promoter (2-3kb),2,9874702,9890034,15333,2,Gata3-202,-2416,9230102O04Rik-202;Gata3-202;Gata3-204;Gata3-203,9230102O04Rik;Gata3;Gata3;Gata3,-2910;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,12,21,14462,ENSMUSG00000015619,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
22467,cg14198079,-0.00000145,0.00000199,-0.727492936,0.467473109,loss,ns,0.00000778,0.00000339,2.297425243,0.022260482,pos,ns,0.003185014,0.000992598,3.208765298,0.001472588,pos,ns,2.831918846,-0.0000836,0.0000341,-2.4493641,0.014864062,neg,ns,0.963914284,Wwox,Wwox_Intron,8,114745365,114745414,114745413,114745414,50,-,ACCTCTGGGCTTGCTTAAAACTAACTGGAAAAATTAAAGTGTTCATGCCG,"Intron (Wwox-201/Wwox, intron 8 of 8)",8,114439655,115352708,913054,1,Wwox-201,305710,Wwox-201;Wwox-203;Wwox-204;Wwox-209,Wwox;Wwox;Wwox;Wwox,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,32,32,80707,ENSMUSG00000004637,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24353,cg17666194,-0.00000668,0.00000589,-1.134899471,0.257294185,loss,ns,-0.000023,0.00001,-2.297349333,0.022264865,neg,ns,0.000533782,0.002931502,0.182084914,0.855635096,pos,ns,0.06771141,-0.0000386,0.000100814,-0.382441148,0.702396239,neg,ns,0.642002486,Usp5,Usp5_Exon,6,124818509,124818558,124818557,124818558,50,+,GTCTTCGTCTTCGTTGCCATAGAAACCAAGGCTACCTTTGGGCTCATCCG,"Exon (Usp5-201/Usp5, exon 15 of 20)",6,124815019,124829484,14466,2,Usp5-201,10926,Tpi1-205;Tpi1-204;Tpi1-207;Tpi1-206;Usp5-201;Usp5-202;Usp5-204;Usp5-209;Usp5-203;Usp5-206;Usp5-205;Usp5-207,Tpi1;Tpi1;Tpi1;Tpi1;Usp5;Usp5;Usp5;Usp5;Usp5;Usp5;Usp5;Usp5,-4213;-4351;-4213;-4355;0;0;0;-616;4911;10850;5065;5642,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,22225,ENSMUSG00000038429,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
15847,cg12729528,-0.00000412,0.00000446,-0.923835595,0.356290439,loss,ns,0.0000174,0.00000757,2.296863535,0.022292933,pos,ns,0.00675697,0.002218611,3.045585683,0.002521622,pos,ns,2.598319943,-0.000146428,0.0000763,-1.919164821,0.055881365,neg,ns,0.930503442,Rbm25,Rbm25_Exon,12,83662216,83662265,83662216,83662217,50,+,CGTCCATTTACAGCACGGATGAGTCTGAAGAGAGAATAAGGTAAGATTTA,"Exon (Rbm25-206/Rbm25, exon 8 of 10)",12,83631236,83674417,43182,1,Rbm25-202,30980,Rbm25-202;Rbm25-201;Rbm25-205;Rbm25-210;Rbm25-208;Rbm25-206;Rbm25-217;Rbm25-218,Rbm25;Rbm25;Rbm25;Rbm25;Rbm25;Rbm25;Rbm25;Rbm25,0;0;29925;0;0;0;3691;-711,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,67039,ENSMUSG00000010608,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2957,cg26755269,0.0000795,0.00000467,17.01657296,2.57E-46,gain,yes,-0.0000182,0.00000794,-2.296771103,0.022298277,neg,ns,-0.001018727,0.002326666,-0.437848146,0.661801281,neg,ns,0.179272397,0.000109339,0.00008,1.366501233,0.172772001,pos,ns,0.073258044,Igf2bp2,Igf2bp2_Intron,16,22162073,22162122,22162073,22162074,50,-,CGGAAAGCCCCCAGCCCCGAGTTCTTCTCAATAAAATCGGACAAAAAATT,"Intron (Igf2bp2-201/Igf2bp2, intron 1 of 15)",16,22059009,22163299,104291,2,Igf2bp2-201,1177,Igf2bp2-201;Igf2bp2-206;Igf2bp2-202;Igf2bp2-204;Igf2bp2-205,Igf2bp2;Igf2bp2;Igf2bp2;Igf2bp2;Igf2bp2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,5,319765,ENSMUSG00000033581,conserved gene and region,16,22161628,22162270,643,*,643,63,0.68273717,0.840889276,0.097978227,2.15E-47,CpGisland,TRUE,U3,Pr-B
26826,cg17537491,-0.0000352,0.00000343,-10.27433662,1.67E-21,loss,yes,-0.0000134,0.00000583,-2.29655452,0.022310802,neg,ns,0.006830464,0.001707406,4.000491706,0.0000791,pos,ns,4.101775626,-0.000117865,0.0000587,-2.007313003,0.045584047,neg,ns,0.920458339,Smg7,Smg7_Exon,1,152856529,152856578,152856529,152856530,50,-,CGAAGGTGATGAAGTTGAAACAGGTTAATGACAGTGACATGAACTAACTG,"Exon (Smg7-202/Smg7, exon 9 of 22)",1,152836995,152902622,65628,2,Smg7-202,46044,Smg7-202;Smg7-201;Smg7-203;Smg7-204,Smg7;Smg7;Smg7;Smg7,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,7,226517,ENSMUSG00000042772,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5945,cg11483789,0.000240259,0.0000149,16.11662989,7.17E-43,gain,yes,-0.0000582,0.0000253,-2.296453347,0.022316656,neg,ns,-0.006806414,0.007419621,-0.917353292,0.35967067,neg,ns,0.444094976,0.000352269,0.00025516,1.380579486,0.168402891,pos,ns,0.400795892,Sema5b,Sema5b_Intron,16,35542297,35542346,35542345,35542346,50,-,TTTCTCATGGTAATTTGTCTTTGTGGTTGGGGCTGCCCATTCACTTTCCG,"Intron (Sema5b-205/Sema5b, intron 1 of 5)",16,35541145,35648140,106996,1,Sema5b-205,1152,Sema5b-205;Sema5b-202;Sema5b-201,Sema5b;Sema5b;Sema5b,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,5,20357,ENSMUSG00000052133,conserved gene and region,16,35542345,35542711,367,*,367,33,0.643051771,0.904143337,0.089918256,8.33E-24,CpGisland,TRUE,U3,Pr-B
18997,cg16845195,-0.000000295,0.00000845,-0.034906563,0.972176713,loss,ns,0.000033,0.0000144,2.296340741,0.022323172,pos,ns,0.005157218,0.004207382,1.225754754,0.221221351,pos,ns,0.655172961,-0.000284574,0.000144692,-1.966763779,0.050102165,neg,ns,0.860182522,Dach1,Dach1_Intron,14,98156811,98156860,98156859,98156860,50,+,TAAAGGTGCTTGAACAAATTTTTGATTCTAACAAGCTCATTTTTCATGCG,"Intron (Dach1-201/Dach1, intron 1 of 10)",14,97786853,98169543,382691,2,Dach1-201,12683,Dach1-201;Dach1-202;Dach1-203,Dach1;Dach1;Dach1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,76,13134,ENSMUSG00000055639,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1118,cg09706290,-0.0000242,0.00000893,-2.709161582,0.00712037,loss,ns,0.0000349,0.0000152,2.296325669,0.022324045,pos,ns,0.000500674,0.004446901,0.112589379,0.910428977,pos,ns,0.040753928,-0.0000866,0.000152929,-0.566572306,0.571414755,neg,ns,0.80400542,Ikzf1,Ikzf1_Promoter,11,11676082,11676131,11676130,11676131,50,+,TATAAGGTGTATATTACCCCCATGTCTACGAGATTCTCACTTAGCCAACG,Promoter (8-9kb),11,11685003,11707800,22798,1,Ikzf1-206,-8872,NA,NA,NA,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,4,15,22778,ENSMUSG00000018654,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12746,cg24758605,-0.00000201,0.00000224,-0.898106018,0.369826031,loss,ns,0.00000874,0.00000381,2.296055697,0.022339675,pos,ns,0.002293271,0.001115329,2.056137734,0.040606197,pos,ns,1.391407681,-0.0000826,0.0000384,-2.153949366,0.032014685,neg,ns,0.951964969,Rsrc1,Rsrc1_Intron,3,67036978,67037027,67037026,67037027,50,+,CCATGTGATAGATGGAAAAAGCTTCAACTACATGCTGGCCTTGGCTGGCG,"Intron (Rsrc1-206/Rsrc1, intron 3 of 9)",3,66981390,67356559,375170,1,Rsrc1-206,55588,Rsrc1-206;Rsrc1-203;Rsrc1-208;Rsrc1-202;Rsrc1-201;Rsrc1-209;Rsrc1-205,Rsrc1;Rsrc1;Rsrc1;Rsrc1;Rsrc1;Rsrc1;Rsrc1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,37,66880,ENSMUSG00000034544,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14564,cg05393688,0.000328574,0.0000354,9.280868928,3.01E-18,gain,yes,-0.000138093,0.0000601,-2.295978981,0.022344118,neg,ns,0.024778947,0.017620643,1.406245309,0.160652874,pos,ns,0.7941115,-0.003695504,0.000605972,-6.09846893,3.18E-09,neg,yes,0.242036312,Tsc22d1,Tsc22d1_Intron,14,76505859,76505908,76505859,76505860,50,-,CGGGATTCTCTGCCCACTGTTGCTAGGCAAACTCTGAACCTTTAATTCGG,"Intron (Tsc22d1-204/Tsc22d1, intron 4 of 4)",14,76414961,76507762,92802,1,Tsc22d1-204,90898,Tsc22d1-204;Tsc22d1-202;Tsc22d1-207;Tsc22d1-208;Tsc22d1-203;Tsc22d1-214;Tsc22d1-201;Tsc22d1-206;Tsc22d1-205,Tsc22d1;Tsc22d1;Tsc22d1;Tsc22d1;Tsc22d1;Tsc22d1;Tsc22d1;Tsc22d1;Tsc22d1,0;0;0;0;0;0;0;1329;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,Intron,6,10,21807,ENSMUSG00000022010,conserved gene and region,14,76505732,76505860,129,*,129,9,0.519379845,1.040322581,0.069767442,0.00000752,CpGisland,TRUE,U1,Pr-A
16404,cg23774769,-0.0000087,0.00000674,-1.289869971,0.198057217,loss,ns,0.0000263,0.0000115,2.295972967,0.022344466,pos,ns,0.008811974,0.003356134,2.625632444,0.009077884,pos,ns,2.042015368,-0.000266406,0.000115417,-2.308199974,0.021645957,neg,ns,0.901342654,Exoc6b,Exoc6b_Exon,6,84851885,84851934,84851885,84851886,50,+,CGTAGATAAATTCTTTAATTTGGTTGTAAACTTTTGGCACAAATTCAGAG,"Exon (Exoc6b-203/Exoc6b, exon 15 of 22)",6,84618487,85069513,451027,2,Exoc6b-203,217579,Exoc6b-203;Exoc6b-202;Exoc6b-201;Exoc6b-207,Exoc6b;Exoc6b;Exoc6b;Exoc6b,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,8,75914,ENSMUSG00000033769,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6925,cg16184456,0.000000697,0.00000202,0.345578196,0.729894122,gain,ns,-0.00000787,0.00000343,-2.295783502,0.022355443,neg,ns,0.000362602,0.001004272,0.361059845,0.718300641,pos,ns,0.143693746,-0.0000437,0.0000345,-1.266216162,0.206386361,neg,ns,0.943497639,Braf,Braf_Exon,6,39614209,39614258,39614209,39614210,50,-,CGATTCAAGGAGGGTTCTGATGCACTGCGGTGAATTTTTGGCAATGAGCG,"Exon (Braf-201/Braf, exon 21 of 22)",6,39603237,39725463,122227,2,Braf-201,111205,Braf-201;Braf-202,Braf;Braf,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,109880,ENSMUSG00000002413,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18071,cg14201821,-0.00000394,0.00000289,-1.365797619,0.172992578,loss,ns,0.0000113,0.0000049,2.295597227,0.02236624,pos,ns,0.004263917,0.001436533,2.968199479,0.003228936,pos,ns,2.490940596,-0.000138177,0.0000494,-2.796985275,0.005480576,neg,ns,0.929867252,Pola1,Pola1_Intron,X,93497690,93497739,93497738,93497739,50,+,GAGGGTTATTACTGACATTCAGATGGAATTTAAAATTCCTACGCAAGTCG,"Intron (Pola1-201/Pola1, intron 26 of 36)",20,93304767,93632155,327389,2,Pola1-201,134416,Pola1-201,Pola1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,59,62,18968,ENSMUSG00000006678,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3129,cg03740595,0.0000123,0.00000458,2.684425882,0.007656092,gain,ns,-0.0000179,0.00000778,-2.295579508,0.022367267,neg,ns,0.002436758,0.002278205,1.069595724,0.285633431,pos,ns,0.544190963,0.00000832,0.0000783,0.106186092,0.915503385,pos,ns,0.900327711,Kat6a,Kat6a_Exon,8,22910233,22910282,22910233,22910234,50,-,CGTCCAAAAAACAGGTTAAAGAAACAAAACACGGTGTAAGTTGTACTTGT,"Exon (Kat6a-202/Kat6a, exon 6 of 17)",8,22859535,22943259,83725,1,Kat6a-202,50698,Kat6a-202;Kat6a-204;Kat6a-201;Kat6a-203,Kat6a;Kat6a;Kat6a;Kat6a,0;0;0;-3504,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,6,244349,ENSMUSG00000031540,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20844,cg25693396,0.0000401,0.00000422,9.499123682,5.99E-19,gain,yes,-0.0000165,0.00000718,-2.295264973,0.022385509,neg,ns,0.005765244,0.002102653,2.741890733,0.006463545,pos,ns,2.189529196,-0.000151011,0.0000723,-2.08838068,0.037579204,neg,ns,0.083547647,Pax6,Pax6_Exon,2,105660496,105660545,105660496,105660497,50,+,CGGGTTTGTAATGTAATTTGTAATTACTGCCCTTCATGTGGTCCGGTGCC,Promoter (8-9kb),2,105668900,105697364,28465,1,Pax6-206,-8355,NA,NA,NA,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,31,78,18508,ENSMUSG00000027168,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
26000,cg19516060,-0.00000432,0.00000385,-1.12348226,0.26210201,loss,ns,0.000015,0.00000653,2.295094578,0.022395397,pos,ns,0.003235129,0.001913912,1.690322577,0.091971471,pos,ns,1.036346865,0.00000494,0.0000658,0.075098212,0.940185009,pos,ns,0.944407093,Ammecr1,Ammecr1_threeUTR,X,142853147,142853196,142853195,142853196,50,+,TAGAGTCCGCATGACCAGTCACGTGACCTGCTCAAGATTGATTAGCACCG,3' UTR,20,142851146,142966728,115583,2,Ammecr1-201,113532,Ammecr1-201,Ammecr1,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,8,56068,ENSMUSG00000042225,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17568,cg25657421,-0.00000251,0.00000167,-1.50436742,0.133504908,loss,ns,-0.0000065,0.00000283,-2.29486012,0.022409009,neg,ns,0.002125441,0.000829957,2.560905436,0.01091326,pos,ns,1.962045517,-0.00007,0.0000285,-2.45334397,0.014703771,neg,ns,0.949002959,Paxbp1,Paxbp1_Exon,16,91034789,91034838,91034837,91034838,50,+,ATCTGCCCTACCTGTCTTTAAGCTGTTTCTTTACCAAATCAATAGTAACG,"Exon (Paxbp1-202/Paxbp1, exon 6 of 18)",16,91014037,91044543,30507,2,Paxbp1-202,9705,Paxbp1-202;Paxbp1-201;Paxbp1-207;Paxbp1-206;Paxbp1-203;Paxbp1-204,Paxbp1;Paxbp1;Paxbp1;Paxbp1;Paxbp1;Paxbp1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,7,67367,ENSMUSG00000022974,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3217,cg07173733,0.00000645,0.00000334,1.933384301,0.054099185,gain,ns,-0.000013,0.00000567,-2.29453851,0.022427692,neg,ns,-0.001170799,0.001661655,-0.704598124,0.481589362,neg,ns,0.317323115,-0.00000514,0.0000571,-0.089921184,0.928407916,neg,ns,0.890466406,Smc5,Smc5_Exon,19,23257549,23257598,23257597,23257598,50,+,GTTACAGGAATCTGCCCTTCTTTAAGTTTTCTGACCTCTTCCTTCACTCG,"Exon (Smc5-201/Smc5, exon 7 of 25)",19,23206451,23273818,67368,2,Smc5-201,16220,Smc5-201;Smc5-202;Smc5-206,Smc5;Smc5;Smc5,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,226026,ENSMUSG00000024943,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26545,cg04209170,-0.000013,0.00000417,-3.105459298,0.002075378,loss,ns,-0.0000163,0.00000709,-2.294059235,0.022455559,neg,ns,0.001771506,0.002077876,0.852556261,0.394563618,pos,ns,0.403882963,-0.000100973,0.0000715,-1.41304106,0.158646898,neg,ns,0.869277207,Casz1,Casz1_Intron,4,148904404,148904453,148904404,148904405,50,-,CGGAAGATTAGGAGAGTTTGGGAATAAATTCCACAAATGCTAATAAAAAA,"Intron (Casz1-201/Casz1, intron 4 of 15)",4,148804429,148945129,140701,1,Casz1-201,99975,Casz1-201;Casz1-202;Casz1-206,Casz1;Casz1;Casz1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,94,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12599,cg10300722,-0.00000216,0.00000103,-2.100158466,0.036522665,loss,ns,-0.00000401,0.00000175,-2.293802424,0.022470503,neg,ns,-0.001260899,0.00051178,-2.463752496,0.014291778,neg,ns,1.844913746,0.00000454,0.0000176,0.25785703,0.796688341,pos,ns,0.967069141,Map2k4,Map2k4_threeUTR,11,65719488,65719537,65719536,65719537,50,-,CTGAAGAGTGCACCATAAAACTGAACAATGTATGGGCAATCACTACTCCG,3' UTR,11,65688243,65788297,100055,2,Map2k4-201,68760,Map2k4-201;Map2k4-202;Map2k4-205;Map2k4-207;Map2k4-203;Map2k4-204,Map2k4;Map2k4;Map2k4;Map2k4;Map2k4;Map2k4,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,3,26398,ENSMUSG00000033352,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18016,cg13777420,-0.00000404,0.0000091,-0.443668698,0.657591632,loss,ns,0.0000355,0.0000155,2.29371374,0.022475666,pos,ns,-0.00579179,0.004529562,-1.278664386,0.201971687,neg,ns,0.694709508,0.000123579,0.000155771,0.793338719,0.428187294,pos,ns,0.782498883,Pola1,Pola1_Intron,X,93310400,93310449,93310400,93310401,50,-,CGGCTCCCAGCAGGTGGAGCATTTAAAATAAATAGCATTTCCTACAAAAC,"Intron (Pola1-201/Pola1, intron 36 of 36)",20,93304767,93632155,327389,2,Pola1-201,321706,Pola1-201,Pola1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,59,62,18968,ENSMUSG00000006678,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8834,cg20464004,-0.000018,0.00000891,-2.021096099,0.044129031,loss,ns,0.0000347,0.0000151,2.293382542,0.022494956,pos,ns,0.014874194,0.004436333,3.35281263,0.000899113,pos,ns,3.046185753,-0.00054869,0.000152565,-3.59642789,0.000375287,neg,ns,0.821462957,Gm13466,Gm13466_Intergenic_downstream,2,45998159,45998208,45998159,45998160,50,-,CGCACAATAAACCCTGTCATATAAAAGCAAACTGGATAAAATAACAGAAG,Distal Intergenic,2,45809472,45810470,999,1,Gm13466-201,188736,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,9,666604,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26031,cg09515041,-0.00000822,0.00000417,-1.97175266,0.049526691,loss,ns,-0.0000163,0.00000709,-2.293093515,0.022511802,neg,ns,-0.004226177,0.002076154,-2.035579364,0.042642739,neg,ns,1.370154904,0.000182522,0.0000714,2.556369886,0.01105351,pos,ns,0.859626089,Kcnq1,Kcnq1_Exon,7,143265493,143265542,143265541,143265542,50,-,TTAGAATTTCCATGTCTTCAACTTTCTCCTGGACCCTGCAGAATCTCACG,"Exon (Kcnq1ot1-201/Kcnq1ot1-201, exon 1 of 1)",7,143107254,143427042,319789,1,Kcnq1-201,158239,Kcnq1-201;Kcnq1-202,Kcnq1;Kcnq1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,9,16535,ENSMUSG00000009545,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11173,cg13681672,0.00000555,0.00000535,1.036503334,0.300775216,gain,ns,0.0000209,0.0000091,2.293018676,0.022516166,pos,ns,0.000732477,0.00266479,0.274872357,0.783597406,pos,ns,0.10590701,0.000156433,0.0000916,1.707007555,0.088821977,pos,ns,0.780060539,Satb2,Satb2_Intron,1,56833379,56833428,56833427,56833428,50,+,TCAGCCAAGACAGCAACACCAGCTGTTCTCATTGTGCAGCCTCTTCCTCG,"Intron (Satb2-201/Satb2, intron 8 of 9)",1,56793981,56972502,178522,2,Satb2-201,139074,Satb2-201;Satb2-202;Satb2-205,Satb2;Satb2;Satb2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,33,212712,ENSMUSG00000038331,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18085,cg08933237,-0.00000622,0.00000213,-2.917592708,0.003785239,loss,ns,0.0000083,0.00000362,2.292736778,0.022532609,pos,ns,0.001826673,0.001060254,1.722863841,0.085910395,pos,ns,1.065954283,-0.0000617,0.0000365,-1.692009404,0.091649021,neg,ns,0.954447928,Magi1,Magi1_threeUTR,6,93694070,93694119,93694118,93694119,50,-,TCTGAATGGGATTTGTTGGTGATGGAACATCCATTTACTGCCAAGATCCG,3' UTR,6,93675455,94283322,607868,2,Magi1-201,589203,Magi1-201;Magi1-202;Magi1-208;Magi1-203;Magi1-206;Magi1-209;Magi1-205,Magi1;Magi1;Magi1;Magi1;Magi1;Magi1;Magi1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,18,14924,ENSMUSG00000045095,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16679,cg02984513,-0.0000307,0.00000639,-4.801468146,0.00000246,loss,ns,0.0000249,0.0000109,2.292648574,0.022537757,pos,ns,0.005808136,0.003180177,1.826355905,0.068758328,pos,ns,1.162674696,-0.000147226,0.000109366,-1.346180667,0.179227808,neg,ns,0.892589253,Adamtsl1,Adamtsl1_Intron,4,86054831,86054880,86054831,86054832,50,-,CGAAGTAAATGTTCCGTTGTGACTCATACTTGGTTTTATGGGCAGAAAAT,"Intron (Adamtsl1-212/Adamtsl1, intron 2 of 3)",4,85514172,86110862,596691,1,Adamtsl1-212,540659,Adamtsl1-212;Adamtsl1-206;Adamtsl1-203;Adamtsl1-201;Adamtsl1-209;Adamtsl1-204;Adamtsl1-211,Adamtsl1;Adamtsl1;Adamtsl1;Adamtsl1;Adamtsl1;Adamtsl1;Adamtsl1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,10,77739,ENSMUSG00000066113,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19104,cg26548309,-0.0000394,0.0000146,-2.705972527,0.007187485,loss,ns,0.0000567,0.0000247,2.29183549,0.022585253,pos,ns,0.01095619,0.007243929,1.512465097,0.131434343,pos,ns,0.881291142,0.00026823,0.000249118,1.076717057,0.282443887,pos,ns,0.293459004,Gm2445,Gm2445_Intergenic_downstream,13,98393427,98393476,98393475,98393476,50,-,GCCCTGTGGATAATATCATTACAGGACTAAACAAATAAACAGTCGATCCG,Distal Intergenic,13,98402095,98403083,989,2,Gm2445-201,9656,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,100039827,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
19720,cg19576265,0.0000426,0.0000041,10.38667854,6.98E-22,gain,yes,-0.000016,0.00000697,-2.291214296,0.0226216,neg,ns,-0.00399367,0.002041219,-1.956512216,0.051302389,neg,ns,1.28986241,0.000114999,0.0000702,1.638223986,0.102389515,pos,ns,0.906001046,Stat3,Stat3_threeUTR,11,100889512,100889561,100889560,100889561,50,-,ACCATTATTTCCAAACTGCATCAATGAATCTAAAGTGCGGGGGGACATCG,3' UTR,11,100885098,100939404,54307,2,Stat3-202,49843,Stat3-202;Stat3-203;Stat3-205;Stat3-201;Stat3-207;Stat3-210;Stat3-213;Stat3-206;Stat3-214;Stat3-209;Stat3-208;Stat5a-201;Stat5a-202;Stat5a-203,Stat3;Stat3;Stat3;Stat3;Stat3;Stat3;Stat3;Stat3;Stat3;Stat3;Stat3;Stat5a;Stat5a;Stat5a,0;0;0;0;0;0;4241;4872;9746;5561;8967;30161;29856;29028,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,2,20848,ENSMUSG00000004040,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2598,cg12109865,0.000025,0.0000034,7.368319659,1.58E-12,gain,yes,-0.0000132,0.00000577,-2.29119923,0.022622482,neg,ns,0.012257695,0.001690715,7.25000739,3.34E-12,pos,yes,11.47589799,-0.0003639,0.0000581,-6.258641518,1.29E-09,neg,yes,0.937738114,Eif4g1,Eif4g1_Exon,16,20682177,20682226,20682225,20682226,50,-,AAGGCCATTTCAGAGCCCAACTTCTCTGTGGCCTATGCCAACATGTGCCG,"Exon (Eif4g1-201/Eif4g1, exon 16 of 33)",16,20672723,20692884,20162,1,Eif4g1-201,9454,Eif4g1-220;Eif4g1-208;Eif4g1-201;Eif4g1-206;Eif4g1-216;Eif4g1-202;Eif4g1-217;Eif4g1-207;Eif4g1-218;Eif4g1-225;Eif4g1-214;Eif4g1-203;Eif4g1-222;Eif4g1-221;Eif4g1-205;Eif4g1-212;Eif4g1-204;Eif4g1-215;Eif4g1-219;Eif4g1-210;Eif4g1-211;Eif4g1-213;Eif4g1-223;Eif4g1-224,Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;3771;1138;-1570;-1864,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,10,208643,ENSMUSG00000045983,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10144,cg12459916,0.000106999,0.00000943,11.34462075,3.50E-25,gain,yes,-0.0000367,0.000016,-2.291097078,0.022628464,neg,ns,0.013281298,0.004694249,2.829269975,0.004969635,pos,ns,2.303675501,-0.000535029,0.000161435,-3.31421248,0.001027945,neg,ns,0.513020659,Gm28308,Gm28308_Exon,6,52204182,52204231,52204182,52204183,50,+,CGACGCTGAGATCCATGCCATTGTAGCCGTAGCCGTACCTGCCGGAGTGC,"Exon (Hoxa5-201/Hoxa5, exon 1 of 2)",6,52163359,52213339,49981,2,Gm28308-201,9108,Gm28308-201;Hoxa3-201;Hoxa3-203;Hoxa5-201;Hoxa6-201,Gm28308;Hoxa3;Hoxa3;Hoxa5;Hoxa6,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,30,103,,NA,mapped to different genes,6,52203658,52204321,664,*,664,70,0.680722892,0.922222222,0.105421687,5.32E-55,CpGisland,TRUE,U3,Pr-B
13299,cg22276515,0.00017817,0.0000204,8.713511047,1.81E-16,gain,yes,-0.0000796,0.0000347,-2.290960374,0.022636471,neg,ns,0.013044067,0.010176931,1.281728889,0.200895571,pos,ns,0.697029639,-0.000527147,0.000349984,-1.506204461,0.133032968,neg,ns,0.334454401,Dlg4,Dlg4_fiveUTR,11,70026948,70026997,70026948,70026949,50,-,CGCCCCCTCTGGAGCACAGCCCGGCCCACCTCCCCAACCAGGTAAACGCC,5' UTR,11,70016942,70044954,28013,1,Dlg4-217,10006,Dlg4-217;Dlg4-205;Dlg4-204;Dlg4-209;Dlg4-202;Dlg4-215;Dlg4-203;Dlg4-219;Dlg4-210;Dlg4-214;Dlg4-206;Dlg4-211;Dlg4-222;Dlg4-216;Dlg4-218;Dlg4-201;Dlg4-221;Dlg4-208;Dlg4-213;Dlg4-220;Dlg4-212,Dlg4;Dlg4;Dlg4;Dlg4;Dlg4;Dlg4;Dlg4;Dlg4;Dlg4;Dlg4;Dlg4;Dlg4;Dlg4;Dlg4;Dlg4;Dlg4;Dlg4;Dlg4;Dlg4;Dlg4;Dlg4,0;0;0;0;0;0;0;0;0;0;0;0;-2;-791;-2490;-2528;-2719;-2820;-3026;-3158;-3640,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,4,13385,ENSMUSG00000020886,conserved gene and region,11,70026827,70027161,335,*,335,23,0.68358209,0.598679099,0.068656716,4.35E-14,CpGisland,TRUE,NA,NRS
16352,cg15377343,0.000077,0.0000129,5.960693458,6.83E-09,gain,yes,-0.0000503,0.000022,-2.290910485,0.022639394,neg,ns,0.01708904,0.006431555,2.657061885,0.008290804,pos,ns,2.081403327,-0.000649098,0.000221181,-2.934697433,0.003588108,neg,ns,0.144347447,Gm12420,Gm12420_Intergenic_downstream,4,84768549,84768598,84768549,84768550,50,+,CGATGGTTTTCGGCACCTAAATTGTCATAAATCACATTTATAAAAGCCAT,Distal Intergenic,4,84697863,84698910,1048,1,Gm12420-201,70686,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,2,624465,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22738,cg07269838,-0.00000363,0.00000842,-0.430455308,0.66716358,loss,ns,-0.0000328,0.0000143,-2.290843131,0.022643341,neg,ns,-0.002268739,0.004192371,-0.541158967,0.588786681,neg,ns,0.230042023,-0.0000876,0.000144175,-0.607367655,0.544051574,neg,ns,0.854446288,Meis2,Meis2_Exon,2,115867277,115867326,115867277,115867278,50,-,CGGATCCCCATGTGTTGCTGACCATCCAACACAAAGCTCCCCATGGGCTG,"Exon (Meis2-201/Meis2, exon 11 of 12)",2,115863064,116065047,201984,2,Meis2-201,197721,Meis2-201;Meis2-203;Meis2-205;Meis2-206;Meis2-204;Meis2-202;Meis2-208;Meis2-219;Meis2-216;Meis2-218;Meis2-214;Meis2-207;Meis2-215,Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,15,97,17536,ENSMUSG00000027210,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7353,cg13105903,0.0000223,0.0000185,1.201802834,0.230357207,gain,ns,0.000072,0.0000315,2.290043242,0.022690258,pos,ns,0.015502904,0.009216791,1.682028477,0.093570302,pos,ns,1.028861967,0.000452353,0.000316965,1.427139618,0.154546113,pos,ns,0.667496572,Pou4f3,Pou4f3_Intergenic_upstream,18,42383371,42383420,42383419,42383420,50,-,AATGATTTCCTCTAAATTTTTTATCATAAATCAGGGCATGGAGCTAGGCG,Distal Intergenic,18,42394539,42397249,2711,1,Pou4f3-201,-11168,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,17,18998,ENSMUSG00000024497,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13746,cg01872427,-0.0000227,0.00000556,-4.087142002,0.0000557,loss,ns,0.0000216,0.00000944,2.289699282,0.022710458,pos,ns,0.007536074,0.002764781,2.725740025,0.006780494,pos,ns,2.168738672,-0.000311707,0.0000951,-3.278343445,0.001162857,neg,ns,0.843288551,Map3k20,Map3k20_Intron,2,72378730,72378779,72378730,72378731,50,-,CGTTTCTCCATTCAGGTACATAGATCAGAAAACAGTATTGGGGTTTTGCA,"Intron (Map3k20-201/Map3k20, intron 8 of 19)",2,72285637,72442610,156974,1,Map3k20-201,93093,Map3k20-201;Map3k20-204;Map3k20-202;Map3k20-206,Map3k20;Map3k20;Map3k20;Map3k20,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,14,18,65964,ENSMUSG00000004085,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11269,cg16079649,-0.00000141,0.00000292,-0.480966296,0.630879735,loss,ns,-0.0000114,0.00000497,-2.289635024,0.022714234,neg,ns,0.012083694,0.001455576,8.301660766,3.21E-15,pos,yes,14.4934082,-0.000204053,0.0000501,-4.076396303,0.0000582,neg,ns,0.946676603,Mipol1,Mipol1_Intron,12,57292108,57292157,57292108,57292109,50,+,CGAATACTAATAAATGCCTGCAACAATCCAGACGAGAGATGCCTGGCAAC,"Intron (Mipol1-210/Mipol1, intron 1 of 3)",12,57230427,57308695,78269,1,Mipol1-210,61681,Mipol1-210;Mipol1-207;Mipol1-206;Mipol1-205;Mipol1-201;Mipol1-209;Mipol1-208;Mipol1-203,Mipol1;Mipol1;Mipol1;Mipol1;Mipol1;Mipol1;Mipol1;Mipol1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,7,73490,ENSMUSG00000047022,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8525,cg07468634,0.0000349,0.00000279,12.48467728,2.96E-29,gain,yes,-0.0000109,0.00000475,-2.289426475,0.022726491,neg,ns,-0.001391721,0.001390726,-1.000715928,0.317744643,neg,ns,0.497921762,0.0000822,0.0000478,1.718762474,0.086655969,pos,ns,0.059422627,Btrc,Btrc_Intron,19,45302019,45302068,45302067,45302068,50,-,AAGGAAAATAAACGTGTAAGGCTGTTTCTGGGAGCCCAGCTCAGGGACCG,"Intron (Gm28578-211/Gm28578-211, intron 1 of 1)",19,45363734,45507736,144003,1,Btrc-204,-61715,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,63,98,12234,ENSMUSG00000025217,mapped to different genes,19,45301752,45302408,657,*,657,54,0.611872146,0.882427559,0.082191781,2.09E-36,CpGisland,TRUE,U3,Pr-B
18270,cg04339551,-0.00000253,0.00000551,-0.459542242,0.646166921,loss,ns,0.0000214,0.00000936,2.289352269,0.022730854,pos,ns,0.005431627,0.002741486,1.981271083,0.048444177,pos,ns,1.314758421,-0.000114112,0.0000943,-1.210356586,0.227064138,neg,ns,0.914954381,Dyrk1a,Dyrk1a_Exon,16,94663742,94663791,94663790,94663791,50,+,GTGATGCCTGATATTGTCATGTTACAGAGGCGGATGCCCCAAACCTTCCG,"Exon (Dyrk1a-202/Dyrk1a, exon 4 of 12)",16,94570010,94695067,125058,1,Dyrk1a-202,93732,Dyrk1a-202;Dyrk1a-203;Dyrk1a-205;Dyrk1a-206;Dyrk1a-201,Dyrk1a;Dyrk1a;Dyrk1a;Dyrk1a;Dyrk1a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,14,13548,ENSMUSG00000022897,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14985,cg08187930,-0.0000594,0.0000123,-4.842752834,0.00000203,loss,ns,0.0000477,0.0000208,2.289294291,0.022734263,pos,ns,-0.005362332,0.006106183,-0.87818073,0.380525771,neg,ns,0.419615925,0.000105122,0.000209991,0.500603919,0.617005124,pos,ns,0.597078809,Tnfsf11,Tnfsf11_Intergenic_upstream,14,78330789,78330838,78330789,78330790,50,-,CGTAAGCGAGTGGTCACAGTCCTTAATTGCAAAGGGGAAGTGGTCAGAAA,Distal Intergenic,14,78277445,78308043,30599,2,Tnfsf11-201,-22795,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,21943,ENSMUSG00000022015,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
21309,cg20657044,-0.0000206,0.00000891,-2.305531447,0.021796755,loss,ns,0.0000347,0.0000151,2.289042745,0.02274906,pos,ns,0.013667871,0.004437074,3.08037954,0.002252613,pos,ns,2.647313335,-0.000436066,0.000152591,-2.857752562,0.004555227,neg,ns,0.848909208,Rbm15,Rbm15_Intergenic_downstream,3,107325228,107325277,107325228,107325229,50,-,CGTACCTATGAAACCGTCACGGTGCATGCACATCCAAGGCATGTGGAACC,Distal Intergenic,3,107327135,107333101,5967,2,Rbm15-202,7873,Rbm15-201;Rbm15-202,Rbm15;Rbm15,0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,9,229700,ENSMUSG00000048109,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17836,cg26339573,-0.0000618,0.0000113,-5.446513186,0.000000105,loss,yes,0.0000441,0.0000193,2.288975781,0.022753,pos,ns,0.004287814,0.005648117,0.759158263,0.448334743,pos,ns,0.348397604,-0.000523734,0.000194238,-2.696345658,0.007393562,neg,ns,0.740660785,Irx3,Irx3_Exon,8,91991946,91991995,91991994,91991995,50,-,TCTGTACAGTGTCGACAGTCTGTAATGCCTTTTTAGCATGAATGACAACG,"Exon (Gm36670-201/Gm36670-201, exon 1 of 3)",8,91798525,91802067,3543,2,Irx3-202,-189928,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,16,36,16373,ENSMUSG00000031734,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13969,cg19972349,-0.0000144,0.00000667,-2.15798452,0.031696728,loss,ns,0.0000259,0.0000113,2.288676664,0.022770609,pos,ns,0.006344831,0.003320963,1.91053969,0.056986137,pos,ns,1.244230781,-0.000254611,0.000114208,-2.229372332,0.026505383,neg,ns,0.615070021,Hif1a,Hif1a_Exon,12,73941976,73942025,73942024,73942025,50,+,TTGGAGATGTTAGCTCCCTATATCCCAATGGATGATGACTTCCAGTTACG,"Exon (Hif1a-202/Hif1a, exon 12 of 15)",12,73901375,73947530,46156,1,Hif1a-202,40601,Hif1a-202;Hif1a-201;Hif1a-205;Snapc1l-201,Hif1a;Hif1a;Hif1a;Snapc1l,0;0;4306;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,15251,ENSMUSG00000021109,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11097,cg26866452,-0.00000236,0.00000721,-0.326784711,0.744051252,loss,ns,0.000028,0.0000123,2.288544395,0.022778399,pos,ns,-0.000661351,0.003589005,-0.184271294,0.853921115,neg,ns,0.068582247,0.000155111,0.000123426,1.256720714,0.209800894,pos,ns,0.746385805,Gm47178,Gm47178_Intergenic_downstream,9,56573217,56573266,56573217,56573218,50,-,CGTTTTAAGGAGAAATAAACAAGGCCTGAAATAAAAGTCGGCAGGAATAC,Distal Intergenic,9,56543756,56544097,342,1,Gm47178-201,29510,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,5,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
991,cg08889005,0.0000089,0.0000043,2.067077182,0.039556703,gain,ns,-0.0000167,0.00000731,-2.288509261,0.022780469,neg,ns,-0.000795433,0.002141859,-0.371375116,0.710611844,neg,ns,0.148367559,0.000123862,0.0000737,1.681571549,0.09365903,pos,ns,0.076597429,Syt7,Syt7_threeUTR,19,10422411,10422460,10422411,10422412,50,+,CGTTAACCCTTCGTTGTCCTGTGGGATAGAGTTGGAGGTGGCTGCCCTCC,3' UTR,19,10389090,10448444,59355,1,Syt7-201,33321,Syt7-201;Syt7-208;Syt7-206;Syt7-203;Syt7-202;Syt7-210;Syt7-211;Syt7-204;Syt7-205;Syt7-207;Syt7-209;Syt7-213;Syt7-214;Syt7-215;Syt7-212,Syt7;Syt7;Syt7;Syt7;Syt7;Syt7;Syt7;Syt7;Syt7;Syt7;Syt7;Syt7;Syt7;Syt7;Syt7,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,9,10,54525,ENSMUSG00000024743,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
17746,cg21870895,-0.00000287,0.00000101,-2.838556893,0.004830895,loss,ns,0.00000393,0.00000172,2.288484051,0.022781954,pos,ns,0.000761789,0.000503675,1.512461604,0.13143523,pos,ns,0.881288209,-0.0000122,0.0000173,-0.705801874,0.480841407,neg,ns,0.975464418,Fto,Fto_Intron,8,91622408,91622457,91622456,91622457,50,+,TCGTAGTTTACACACATTTGCTCAATTCAAGTGTAAAATTGGGCCCCTCG,"Intron (Fto-201/Fto, intron 8 of 8)",8,91313525,91668439,354915,1,Fto-201,308883,Fto-201;Fto-205,Fto;Fto,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,26,26383,ENSMUSG00000055932,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21933,cg17871502,-0.00000233,0.00000323,-0.721631651,0.471064901,loss,ns,-0.0000125,0.00000548,-2.288038891,0.022808193,neg,ns,0.000847114,0.001606094,0.527437131,0.598267335,pos,ns,0.223104709,-0.000143587,0.0000552,-2.599643757,0.009778655,neg,ns,0.924703659,Faf1,Faf1_Exon,4,109757581,109757630,109757629,109757630,50,-,GCCCTGCAGGAGTCATTAAATCAAAACTTCATGCTGATCATCACCCACCG,"Exon (Faf1-201/Faf1, exon 7 of 19)",4,109676588,109963960,287373,1,Faf1-201,80993,Faf1-201;Gm12808-201,Faf1;Gm12808,0;-2764,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,24,14084,ENSMUSG00000010517,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21229,cg27145887,0.0000288,0.0000215,1.338001839,0.18187648,gain,ns,0.0000836,0.0000365,2.287896676,0.022816581,pos,ns,-0.001351032,0.010705967,-0.126194301,0.899659928,neg,ns,0.045921623,0.00076063,0.000368177,2.065933126,0.039665365,pos,ns,0.913537007,Ipo11,Ipo11_Exon,13,106879674,106879723,106879722,106879723,50,-,GACTTGAATTTCACAGAAATCCACTGACCGATGAGCCAAATCACCCTGCG,"Exon (Ipo11-204/Ipo11, exon 15 of 30)",13,106794439,106925150,130712,2,Ipo11-204,45427,Ipo11-204;Ipo11-201;Ipo11-203,Ipo11;Ipo11;Ipo11,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,76582,ENSMUSG00000042590,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1129,cg01250422,-0.00000406,0.0000071,-0.572289866,0.567540398,loss,ns,0.0000276,0.0000121,2.287838249,0.022820028,pos,ns,0.005962343,0.003533799,1.687233324,0.092564382,pos,ns,1.033556096,-0.0000905,0.000121527,-0.744981064,0.456847582,neg,ns,0.920344815,Ryr2,Ryr2_Exon,13,11710007,11710056,11710055,11710056,50,+,CCTGTCAAGGAATAAAACCATGGCTGCCTTGTGATCTGGGCAAAACCCCG,"Exon (Ryr2-201/Ryr2, exon 49 of 105)",13,11553102,12106945,553844,2,Ryr2-201,396889,Ryr2-201;Ryr2-202,Ryr2;Ryr2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,5,20191,ENSMUSG00000021313,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12041,cg22783088,-0.00000546,0.00000579,-0.942885864,0.346473512,loss,ns,0.0000225,0.00000984,2.287735983,0.022826062,pos,ns,-0.000941592,0.002881818,-0.326735401,0.744088515,neg,ns,0.128375399,-0.000053,0.0000991,-0.534505874,0.593374717,neg,ns,0.541561868,Fbxo38,Fbxo38_Exon,18,62515188,62515237,62515236,62515237,50,+,GGGAGCAGGCACACTGCCTGGACACATCCACTTCTGTAGGGCTAGGCTCG,"Exon (Fbxo38-201/Fbxo38, exon 15 of 22)",18,62504155,62548695,44541,2,Fbxo38-201,33458,Fbxo38-201;Fbxo38-203;Fbxo38-204,Fbxo38;Fbxo38;Fbxo38,0;0;5492,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,6,107035,ENSMUSG00000042211,conserved gene and region,18,62515231,62515324,94,*,94,8,0.670212766,0.773662551,0.085106383,0.00000736,CpGisland,TRUE,U10,Tr-S
19831,cg07708989,-0.000016,0.00000736,-2.16892583,0.030848244,loss,ns,0.0000286,0.0000125,2.287697797,0.022828316,pos,ns,0.00522377,0.003664816,1.425384071,0.155052287,pos,ns,0.809521825,-0.000195809,0.000126033,-1.553632655,0.121292352,neg,ns,0.795877081,Med12,Med12_Exon,X,101284296,101284345,101284344,101284345,50,+,TGAGAACCCTGCTAACCGCTACAGCTTTGTCTGCAATGCCCTTATGCACG,"Exon (Med12-204/Med12, exon 22 of 46)",20,101274030,101297465,23436,1,Med12-204,10266,Med12-204;Med12-203;Med12-201;Med12-202;Med12-209;Med12-207;Med12-208,Med12;Med12;Med12;Med12;Med12;Med12;Med12,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,15,15,59024,ENSMUSG00000079487,conserved gene and region,X,101284185,101284351,167,*,167,10,0.54491018,0.809108527,0.05988024,0.00000716,CpGisland,TRUE,U10,Tr-S
20734,cg01879202,-0.00000492,0.0000076,-0.647628223,0.517704761,loss,ns,-0.0000295,0.0000129,-2.287686743,0.022828968,neg,ns,-0.002722836,0.003781987,-0.719948446,0.472099188,neg,ns,0.325966746,-0.00009,0.000130062,-0.692199667,0.489330092,neg,ns,0.786193331,Dab1,Dab1_threeUTR,4,104727987,104728036,104728035,104728036,50,-,GGCCTTCTCCAGTTACTTCAACAAAGTCGGGGTGGCACAGGATACAGACG,3' UTR,4,104367590,104741797,374208,1,Dab1-207,360397,Dab1-207;Dab1-203,Dab1;Dab1,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,13,13131,ENSMUSG00000028519,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27641,cg03162714,0.000009,0.00000171,5.26290654,0.000000265,gain,yes,-0.00000664,0.0000029,-2.287365255,0.02284795,neg,ns,0.002093362,0.000850777,2.460530049,0.014418222,pos,ns,1.841088285,-0.000171936,0.0000293,-5.87650493,1.08E-08,neg,yes,0.062542724,Stx16,Stx16_fiveUTR,2,174077127,174077176,174077175,174077176,50,+,TTAGCCGAGCAAGTGAGTAGTCACATCACCTCCAGCCCTCTGCATTCACG,Promoter (<=1kb),2,174076308,174092433,16126,1,Stx16-205,819,Stx16-205;Stx16-203;Stx16-204;Stx16-202;Stx16-201;Stx16-206,Stx16;Stx16;Stx16;Stx16;Stx16;Stx16,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,6,6,228960,ENSMUSG00000027522,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
7773,cg07340207,0.00000246,0.00000502,0.490322658,0.62425245,gain,ns,-0.0000195,0.00000853,-2.287105769,0.02286328,neg,ns,-0.002172619,0.002498197,-0.869674776,0.38515103,neg,ns,0.414368937,0.0000537,0.0000859,0.62467977,0.532640746,pos,ns,0.889496121,Arhgap15,Arhgap15_threeUTR,2,44243131,44243180,44243179,44243180,50,+,CAGTGGGAGGACATCCACGTTGTCACCGGAGCACTGAAGATGTTTTTCCG,3' UTR,2,43748824,44395953,647130,1,Arhgap15-203,494307,Arhgap15-203;Arhgap15-202;Arhgap15-201,Arhgap15;Arhgap15;Arhgap15,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,78,76117,ENSMUSG00000049744,conserved gene and region,2,44243148,44243342,195,*,195,12,0.487179487,1.042780749,0.061538462,0.000000447,CpGisland,TRUE,U15,NS
22201,cg04056525,-0.00000771,0.00000912,-0.845116427,0.398697619,loss,ns,0.0000354,0.0000155,2.287007486,0.022869089,pos,ns,0.002796198,0.004540651,0.615814389,0.538468899,pos,ns,0.268839376,-0.00000851,0.000156153,-0.054472743,0.956593613,neg,ns,0.806130744,Gm26897,Gm26897_Intron,5,111752689,111752738,111752737,111752738,50,+,AATTTCTCAGCTGATTTGCAATTTATTTACATGTTAGCATTTGATTTCCG,"Intron (E130006D01Rik-203/E130006D01Rik-203, intron 1 of 4)",5,111733924,111734574,651,1,Gm26897-201,18765,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,23,,NA,mapped to different genes,5,111752737,111753334,598,*,598,31,0.628762542,0.579674797,0.051839465,2.92E-15,CpGisland,TRUE,U11,Tr-P
19430,cg04873147,0.0000339,0.00000503,6.729590166,8.23E-11,gain,yes,0.0000196,0.00000855,2.286890319,0.022876016,pos,ns,0.011748874,0.0025055,4.689232706,0.00000412,pos,ns,5.385518448,-0.0000733,0.0000862,-0.850321608,0.395802574,neg,ns,0.079688426,Klf5,Klf5_Intron,14,99299777,99299826,99299777,99299778,50,-,CGTTGAAAGCTGGCAGTTGGCTTTTACACTTGCCCAGCAGCCGAATTAGA,"Intron (Klf5-201/Klf5, intron 1 of 3)",14,99298691,99315036,16346,1,Klf5-201,1086,Klf5-201;Klf5-202,Klf5;Klf5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,12224,ENSMUSG00000005148,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
21199,cg21571952,-0.000019,0.00000588,-3.237653681,0.001335718,loss,ns,-0.0000228,0.00000999,-2.286679064,0.022888509,neg,ns,-0.005556156,0.002925711,-1.899079172,0.058482281,neg,ns,1.232975695,0.0000522,0.000100615,0.518634217,0.604385846,pos,ns,0.912488112,Mpped2,Mpped2_Intron,2,106716162,106716211,106716210,106716211,50,-,TAGGGCCAAGCGGAATCTCATTAGGGACAGCTTCAAAGATCAGTTCCTCG,"Intron (Mpped2-202/Mpped2, intron 2 of 6)",2,106693269,106868356,175088,1,Mpped2-202,22893,Mpped2-202;Mpped2-206;Mpped2-201;Mpped2-203;Mpped2-204,Mpped2;Mpped2;Mpped2;Mpped2;Mpped2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,33,77015,ENSMUSG00000016386,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16711,cg12340251,0.0000211,0.0000147,1.440382183,0.150768474,gain,ns,0.000057,0.0000249,2.286511556,0.02289842,pos,ns,0.009869516,0.007297753,1.35240478,0.177231551,pos,ns,0.751458962,-0.00015974,0.000250969,-0.6364917,0.524925672,neg,ns,0.455375378,Gpatch2l,Gpatch2l_Intergenic_upstream,12,86214492,86214541,86214540,86214541,50,+,CTTAACCCTGACCCGTGTATTAGGGGCCTGTATTAATGCCGCGACAGGCG,Distal Intergenic,12,86241858,86291784,49927,1,Gpatch2l-204,-27317,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,13,17,70373,ENSMUSG00000021254,conserved gene but different region,12,86214265,86214574,310,*,310,23,0.54516129,1.024719747,0.074193548,7.83E-15,CpGisland,TRUE,U13,Hc-P
27679,cg07520168,-0.00000133,0.00000306,-0.433655877,0.664839972,loss,ns,0.0000119,0.0000052,2.286394354,0.022905356,pos,ns,0.003239068,0.001524378,2.124845192,0.034390402,pos,ns,1.463562748,-0.0000933,0.0000524,-1.78027709,0.076009979,neg,ns,0.941307014,Akt3,Akt3_Intron,1,177055152,177055201,177055152,177055153,50,+,CGCACTTAACACTTTTAATTTTGTTGGGTCTTGCATGTAAGCTACATTTG,"Intron (Akt3-201/Akt3, intron 9 of 12)",1,177020073,177248805,228733,2,Akt3-201,193604,Akt3-201;Akt3-203;Akt3-202,Akt3;Akt3;Akt3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,14,23797,ENSMUSG00000019699,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16837,cg06570403,-0.00000321,0.00000697,-0.460891733,0.645199456,loss,ns,-0.0000271,0.0000118,-2.286231875,0.022914976,neg,ns,-0.000346249,0.003468018,-0.099840683,0.920535343,neg,ns,0.035959532,-0.000117081,0.000119265,-0.9816871,0.327019541,neg,ns,0.863031562,Cltc,Cltc_Exon,11,86733693,86733742,86733741,86733742,50,+,TCCTTCCATACTCCAGTGATAAACTGCATTATCCGTAACAAGAGCAACCG,"Exon (Cltc-202/Cltc, exon 3 of 32)",11,86694351,86757565,63215,2,Cltc-202,23823,Cltc-202;Cltc-201,Cltc;Cltc,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,10,67300,ENSMUSG00000047126,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27593,cg19996561,-0.00000451,0.0000016,-2.826509613,0.005011565,loss,ns,0.0000062,0.00000271,2.286180661,0.022918008,pos,ns,0.001321532,0.000794997,1.662311096,0.097461176,pos,ns,1.011168354,-0.0000194,0.0000273,-0.709493166,0.478551775,neg,ns,0.953813149,Mpz,Mpz_Exon,1,171158810,171158859,171158810,171158811,50,-,CGCATCCAGTGGGTAGGGGACCCTCGCTGGAAGGATGGCTCCATTGTCAT,"Exon (Mpz-201/Mpz, exon 5 of 8)",1,171150711,171161130,10420,1,Mpz-201,8099,Mpz-201;Mpz-205;Mpz-206;Mpz-202;Mpz-204;Mpz-203,Mpz;Mpz;Mpz;Mpz;Mpz;Mpz,0;0;0;0;-735;-844,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,17528,ENSMUSG00000056569,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7727,cg06042645,-0.00000356,0.00000279,-1.275023183,0.203255795,loss,ns,0.0000108,0.00000474,2.286138875,0.022920483,pos,ns,0.002129006,0.001388763,1.533022932,0.126290084,pos,ns,0.898630749,-0.0000286,0.0000478,-0.599245467,0.549446888,neg,ns,0.944079693,Arhgap15,Arhgap15_Intron,2,43986708,43986757,43986708,43986709,50,-,CGCGCCTGGAACGACTTTGCTTCTGTGCACTGAATGTTAATTTTGCAAAA,"Intron (Arhgap15-203/Arhgap15, intron 6 of 14)",2,43748824,44395953,647130,1,Arhgap15-203,237884,Arhgap15-203;Arhgap15-202;Arhgap15-201,Arhgap15;Arhgap15;Arhgap15,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,72,78,76117,ENSMUSG00000049744,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19454,cg08256518,-0.0000054,0.00000212,-2.546403047,0.011367377,loss,ns,0.00000824,0.0000036,2.285966687,0.022930683,pos,ns,0.002357796,0.001055473,2.233875529,0.026204207,pos,ns,1.581628982,-0.0000564,0.0000363,-1.554853019,0.121001367,neg,ns,0.947629809,Foxp1,Foxp1_Intron,6,99354796,99354845,99354844,99354845,50,+,ATCCTTAAAAAGACTAAAATAGTTTCATCCTTTCATAACCTGTCATCACG,"Intron (Foxp1-204/Foxp1, intron 1 of 18)",6,98925342,99435345,510004,2,Foxp1-204,80500,Foxp1-204;Foxp1-220;Foxp1-221;Foxp1-222;Foxp1-224;Foxp1-227;Foxp1-219;Gm20696-201,Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Gm20696,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,87,108655,ENSMUSG00000030067,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19138,cg13942194,-0.00000122,0.00000126,-0.964814255,0.335389888,loss,ns,0.00000491,0.00000215,2.285688528,0.022947169,pos,ns,0.002382758,0.000629119,3.787450833,0.000182784,pos,ns,3.73806187,-0.0000459,0.0000216,-2.123255727,0.034524396,neg,ns,0.964411425,Emsy,Emsy_Exon,7,98602663,98602712,98602711,98602712,50,-,ATGGTAGGGCTAGTCTCCATTGCAATCTCATGTTCTGACCAATCCTGACG,"Exon (Emsy-202/Emsy, exon 15 of 20)",7,98587137,98656779,69643,2,Emsy-202,54067,Emsy-202;Emsy-207;Emsy-201;Emsy-206;Emsy-213;Emsy-212;Emsy-204;Emsy-211,Emsy;Emsy;Emsy;Emsy;Emsy;Emsy;Emsy;Emsy,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,13,16,233545,ENSMUSG00000035401,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3507,cg11332099,0.00000997,0.00000982,1.014776126,0.311003909,gain,ns,0.0000381,0.0000167,2.285624468,0.022950967,pos,ns,-0.001978964,0.00488836,-0.404831949,0.685880243,neg,ns,0.163751707,0.000202547,0.00016811,1.204843263,0.2291828,pos,ns,0.848776754,Gm11892,Gm11892_Intergenic_upstream,4,24218568,24218617,24218568,24218569,50,+,CGTGTCAGGTCACAGCTGGATTTAGTCAGCATTAACCTTTGGGGAGAATT,Distal Intergenic,4,24238100,24239301,1202,1,Gm11892-201,-19483,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,16,16,664973,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11585,cg04162275,0.00000423,0.00000632,0.669049303,0.503961965,gain,ns,-0.0000245,0.0000107,-2.285315483,0.022969295,neg,ns,-0.009080687,0.003143427,-2.888785429,0.004139714,neg,ns,2.383029625,0.000137029,0.000108102,1.267583265,0.205898114,pos,ns,0.833224143,Ube3a,Ube3a_Exon,7,59271978,59272027,59271978,59271979,50,-,CGCTACTACCACCAGTTAACTGAGGGCTGTGGAAATGAAGCCTGCACGAA,"Exon (Ube3a-216/Ube3a, exon 3 of 9)",7,59228750,59289819,61070,1,Ube3a-216,43228,Ube3a-216;Ube3a-201;Ube3a-213;Ube3a-203;Ube3a-210;Ube3a-204;Ube3a-207;Ube3a-217;Ube3a-218;Ube3a-202;Ube3a-205,Ube3a;Ube3a;Ube3a;Ube3a;Ube3a;Ube3a;Ube3a;Ube3a;Ube3a;Ube3a;Ube3a,0;0;0;0;0;0;0;0;0;0;-4908,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,22215,ENSMUSG00000025326,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17566,cg04396213,-0.000000522,0.00000233,-0.224011388,0.822896003,loss,ns,-0.00000905,0.00000396,-2.285001555,0.022987929,neg,ns,-0.000949964,0.001160161,-0.818821021,0.413517541,neg,ns,0.383506063,0.000000347,0.0000399,0.008685502,0.993075645,pos,ns,0.921985131,Paxbp1,Paxbp1_Exon,16,91034090,91034139,91034138,91034139,50,+,ATTCTTACCTTTTCACTGAAACACTCAAGCAAGTCTTGGACATACCCTCG,"Exon (Paxbp1-202/Paxbp1, exon 7 of 18)",16,91014037,91044543,30507,2,Paxbp1-202,10404,Paxbp1-202;Paxbp1-201;Paxbp1-207;Paxbp1-206;Paxbp1-203;Paxbp1-204,Paxbp1;Paxbp1;Paxbp1;Paxbp1;Paxbp1;Paxbp1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,7,67367,ENSMUSG00000022974,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19429,cg01663519,0.0000431,0.00000541,7.96476953,3.17E-14,gain,yes,0.000021,0.0000092,2.284887262,0.022994716,pos,ns,0.009567155,0.002693967,3.551325407,0.000442819,pos,ns,3.35377397,0.0000257,0.0000926,0.276886099,0.782052097,pos,ns,0.105773228,Klf5,Klf5_Intron,14,99299775,99299824,99299775,99299776,50,+,CGCGTTGAAAGCTGGCAGTTGGCTTTTACACTTGCCCAGCAGCCGAATTA,"Intron (Klf5-201/Klf5, intron 1 of 3)",14,99298691,99315036,16346,1,Klf5-201,1084,Klf5-201;Klf5-202,Klf5;Klf5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,12224,ENSMUSG00000005148,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
27043,cg04757109,-0.0000035,0.00000376,-0.930026725,0.353080894,loss,ns,0.0000146,0.00000639,2.284835696,0.022997779,pos,ns,0.004946299,0.001871862,2.642448071,0.008648808,pos,ns,2.063043737,-0.00014586,0.0000644,-2.265848748,0.024150034,neg,ns,0.924229021,Ralgps2,Ralgps2_Exon,1,156821437,156821486,156821437,156821438,50,+,CGGGCCGAGAGAATGGTATAATCTGTTCCTGTTGGATTCCATTATAAATT,"Exon (Ralgps2-204/Ralgps2, exon 14 of 19)",1,156804166,156939602,135437,2,Ralgps2-204,118116,Ralgps2-204;Ralgps2-201;Ralgps2-215;Ralgps2-203;Ralgps2-202;Ralgps2-214;Ralgps2-205;Ralgps2-209;Ralgps2-211;Ralgps2-207,Ralgps2;Ralgps2;Ralgps2;Ralgps2;Ralgps2;Ralgps2;Ralgps2;Ralgps2;Ralgps2;Ralgps2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,3,78255,ENSMUSG00000026594,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4210,cg03473316,-0.00000963,0.00000312,-3.088016951,0.002197218,loss,ns,0.0000121,0.0000053,2.28420238,0.023035425,pos,ns,0.00314881,0.001551629,2.029357152,0.043275977,pos,ns,1.363753115,-0.000126773,0.0000534,-2.37579656,0.018118683,neg,ns,0.929146719,Gm7729,Gm7729_Intergenic_downstream,18,27629600,27629649,27629600,27629601,50,-,CGAACCTCCAATAAACCAGCGCTACTTCACAGATTACTTGGAGAGAAAGT,Distal Intergenic,18,27598644,27599756,1113,1,Gm7729-201,31005,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,22,665646,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7906,cg12092528,-0.0000126,0.00000557,-2.259534468,0.024544215,loss,ns,0.0000216,0.00000946,2.284148371,0.023038638,pos,ns,-0.002300927,0.002770638,-0.830468537,0.406913045,neg,ns,0.390498387,0.000134427,0.0000953,1.410833846,0.159296326,pos,ns,0.912299816,Hif1an,Hif1an_Intron,19,44631492,44631541,44631540,44631541,50,+,AATTTCCCTCCATTTAGCACCTGAAGGTAATTAGCTCGAAGAGACTGCCG,"Intron (Gm35460-201/Gm35460-201, intron 3 of 6)",19,44562850,44576274,13425,1,Hif1an-201,68642,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,31,319594,ENSMUSG00000036450,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25085,cg10559644,0.00000977,0.00000446,2.190486153,0.029233488,gain,ns,-0.0000173,0.00000757,-2.284032283,0.023045546,neg,ns,-0.003481832,0.002218989,-1.569107454,0.117643026,neg,ns,0.929433811,-0.0000143,0.0000763,-0.187437588,0.851440174,neg,ns,0.908097345,Nfasc,Nfasc_Exon,1,132620944,132620993,132620944,132620945,50,-,CGTGTGCCGGATGCTGCCCATCTTGTTGGAGGCCAGGCAGAAATACTCCC,"Exon (Nfasc-202/Nfasc, exon 10 of 30)",1,132564690,132741757,177068,2,Nfasc-202,120764,Nfasc-202;Nfasc-201;Nfasc-207;Nfasc-203;Nfasc-205;Nfasc-208;Nfasc-210,Nfasc;Nfasc;Nfasc;Nfasc;Nfasc;Nfasc;Nfasc,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,10,269116,ENSMUSG00000026442,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12472,cg05079685,0.0000185,0.00000455,4.055245099,0.0000634,gain,ns,-0.0000177,0.00000773,-2.283750423,0.023062324,neg,ns,-0.001284296,0.002265244,-0.566957021,0.571153666,neg,ns,0.243247031,0.0000148,0.0000779,0.190549064,0.849003624,pos,ns,0.863863386,Gm13577,Gm13577_Intergenic_downstream,2,64451787,64451836,64451787,64451788,50,+,CGATGGATGGTCAGGGTCCATCTGGCCAGTGCAGCTCGGACAGAAATGAT,Distal Intergenic,2,64474745,64474949,205,2,Gm13577-201,23113,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,17,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13649,cg07972666,0.0000234,0.0000119,1.968206918,0.049935121,gain,ns,0.0000462,0.0000202,2.283657407,0.023067863,pos,ns,0.003556809,0.005927404,0.600061872,0.548903379,pos,ns,0.260504096,0.000187665,0.000203843,0.92063643,0.357956138,pos,ns,0.199560899,Gm47812,Gm47812_Intergenic_downstream,13,71690597,71690646,71690597,71690598,50,-,CGGAAATTAAATGAGTAATGCAATGTCAGTCAATCTTTTAAGCCAAGGCC,Distal Intergenic,13,71625028,71625143,116,1,Gm47812-201,65618,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,5,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27083,cg23973845,-0.0000285,0.0000208,-1.36831688,0.172203788,loss,ns,0.0000808,0.0000354,2.283431539,0.023081319,pos,ns,0.000615555,0.010364041,0.059393325,0.952677098,pos,ns,0.021054275,0.000160024,0.000356419,0.448976533,0.653762285,pos,ns,0.606736972,Cnksr2,Cnksr2_Exon,X,157910220,157910269,157910220,157910221,50,-,CGCTGCTTGTGGGACTTCTAGGTATAAGAGGCTGGTTAAAATGAAAAAGA,"Exon (Cnksr2-201/Cnksr2, exon 10 of 22)",20,157821436,158043294,221859,2,Cnksr2-201,133025,Cnksr2-201;Cnksr2-202,Cnksr2;Cnksr2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,11,245684,ENSMUSG00000025658,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19626,cg05000269,0.00000252,0.00000515,0.489490049,0.624840977,gain,ns,-0.00002,0.00000875,-2.283193803,0.023095489,neg,ns,-0.005157195,0.002563822,-2.011526151,0.045135035,neg,ns,1.345486218,-0.00012735,0.0000882,-1.444370116,0.149644825,neg,ns,0.839073918,Gm8641,Gm8641_Intergenic_upstream,9,100167543,100167592,100167591,100167592,50,-,GAAAAGCTGTCAGCAACAGAAAATGGCTGACATAATCCGTTTATCCTCCG,Distal Intergenic,9,99946564,99947389,826,2,Gm8641-201,-220203,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,15,667456,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2290,cg26757598,0.0000125,0.00000878,1.425627741,0.154981954,gain,ns,0.0000341,0.0000149,2.28314806,0.023098217,pos,ns,-0.000276949,0.004370375,-0.063369591,0.949513042,neg,ns,0.022499066,0.000167113,0.000150297,1.111884017,0.267049566,pos,ns,0.474802068,Nova2,Nova2_Intron,7,18950033,18950082,18950081,18950082,50,+,GGACCCGGCCAGCCAGACCGATAAGGGGGTTCCAGTTACTGTGGCAACCG,"Intron (Nova2-201/Nova2, intron 2 of 3)",7,18925888,18965319,39432,1,Nova2-201,24145,Nova2-201;Nova2-202,Nova2;Nova2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,5,384569,ENSMUSG00000030411,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12075,cg10004854,-0.00000304,0.00000136,-2.241675695,0.025689556,loss,ns,0.00000527,0.00000231,2.283074734,0.023102589,pos,ns,0.002125519,0.000676045,3.144048895,0.00182763,pos,ns,2.738111759,-0.0000494,0.0000232,-2.125278925,0.034353915,neg,ns,0.033770946,Ints6,Ints6_fiveUTR,14,62760636,62760685,62760684,62760685,50,+,ATCAGGAACAGTAAGATGGGCATAGTGCTGGCCGGGGACACCGGGGCCCG,Promoter (<=1kb),14,62676330,62761112,84783,2,Ints6-201,427,Ints6-201;Ints6-202;Ints6-206;Ints6-205;Ints6-204,Ints6;Ints6;Ints6;Ints6;Ints6,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,6,18130,ENSMUSG00000035161,mapped to different genes,14,62760409,62760968,560,*,560,60,0.725,0.81543502,0.107142857,1.08E-47,CpGisland,TRUE,U1,Pr-A
724,cg02310569,-0.00000397,0.00000235,-1.68833198,0.092353168,loss,ns,0.00000912,0.000004,2.282999137,0.023107098,pos,ns,0.002013992,0.001170538,1.720569738,0.086326788,pos,ns,1.063854419,-0.0000655,0.0000403,-1.625951889,0.104975993,neg,ns,0.950909424,Nipbl,Nipbl_Exon,15,8307936,8307985,8307984,8307985,50,-,TAGCTCTAGGATTTTTGCAACATTGCAGATAACCATGAAATCATTTTGCG,"Exon (Nipbl-201/Nipbl, exon 35 of 47)",15,8290617,8444463,153847,2,Nipbl-201,136478,Nipbl-201,Nipbl,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,19,36,71175,ENSMUSG00000022141,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10232,cg05396010,-0.00000895,0.00000524,-1.707771718,0.08867985,loss,ns,-0.0000203,0.0000089,-2.282896116,0.023113244,neg,ns,-0.004442024,0.00260705,-1.703850609,0.089411097,neg,ns,1.048608576,0.00000477,0.0000897,0.05324738,0.957569102,pos,ns,0.895061009,Tcf7,Tcf7_Exon,11,52255147,52255196,52255147,52255148,50,+,CGGCATTTCTTAGGCGAGCCAGGGTCTGCTCACAGCCATGCCAGAGGGGT,"Exon (Tcf7-203/Tcf7, exon 9 of 9)",11,52252371,52282571,30201,2,Tcf7-201,27375,Tcf7-201;Tcf7-202;Tcf7-203,Tcf7;Tcf7;Tcf7,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,8,21414,ENSMUSG00000000782,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15805,cg12844349,-0.00000128,0.0000031,-0.413326085,0.679653486,loss,ns,-0.000012,0.00000527,-2.282820203,0.023117773,neg,ns,-0.002041672,0.001542517,-1.323597734,0.186611943,neg,ns,0.729060564,0.0000332,0.000053,0.626710699,0.531310132,pos,ns,0.910445096,Taf15,Taf15_Exon,11,83497272,83497321,83497272,83497273,50,-,CGCGGTGGCTTCAAAAATTTTGGTGGTAAGTGCTGAGTATCCCAAAATGT,"Exon (Taf15-201/Taf15, exon 8 of 16)",11,83473092,83506743,33652,1,Taf15-201,24180,Taf15-201;Taf15-203,Taf15;Taf15,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,70439,ENSMUSG00000020680,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24923,cg00110825,-0.00000517,0.00000369,-1.401918819,0.161939969,loss,ns,0.0000143,0.00000627,2.282769015,0.023120828,pos,ns,0.005037411,0.001836609,2.74277807,0.006446526,pos,ns,2.190674233,-0.000119566,0.0000632,-1.893039468,0.059283852,neg,ns,0.932491806,Khdrbs1,Khdrbs1_threeUTR,4,129713955,129714004,129714003,129714004,50,+,TTTGGTTTTTTGCGATGCATGTTAGCTTTACACATCCTGATTCTCTTGCG,3' UTR,4,129703164,129742297,39134,2,Khdrbs1-202,28293,Khdrbs1-202;Khdrbs1-204;Khdrbs1-201,Khdrbs1;Khdrbs1;Khdrbs1,0;-135;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,2,20218,ENSMUSG00000028790,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7390,cg02044006,-0.00000502,0.00000285,-1.762662819,0.078942724,loss,ns,0.000011,0.00000484,2.282108612,0.023160269,pos,ns,0.003831807,0.001417701,2.70283225,0.007254131,pos,ns,2.139414627,-0.00012052,0.0000488,-2.471975667,0.013973555,neg,ns,0.945341837,Tcerg1,Tcerg1_Exon,18,42535083,42535132,42535131,42535132,50,+,AGGTGTAGCAATGATGCAAATAGTCAGCTGCCCGTATGTAAAGACAGTCG,"Exon (Tcerg1-209/Tcerg1, exon 6 of 22)",18,42511487,42575793,64307,1,Tcerg1-209,23596,Tcerg1-209;Tcerg1-203;Tcerg1-201;Tcerg1-202;Tcerg1-208;Tcerg1-204;Tcerg1-205,Tcerg1;Tcerg1;Tcerg1;Tcerg1;Tcerg1;Tcerg1;Tcerg1,0;0;0;0;0;0;-1204,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,12,56070,ENSMUSG00000024498,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18724,cg12642246,0.0000308,0.00000402,7.643315763,2.67E-13,gain,yes,-0.0000156,0.00000684,-2.281648383,0.023187789,neg,ns,-0.002391075,0.002002495,-1.194048207,0.233371987,neg,ns,0.631951277,-0.0000427,0.0000689,-0.619427433,0.536089787,neg,ns,0.851218646,Cdk5rap3,Cdk5rap3_Intergenic_downstream,11,96907193,96907242,96907193,96907194,50,+,CGACAAAGAGCCATGAATCAACTGCTCTGCTATGAAATTAAAATCGAATT,Downstream (<1kb),11,96907816,96908758,943,2,Cdk5rap3-210,1516,Cdk5rap3-201;Cdk5rap3-205;Cdk5rap3-210;Cdk5rap3-208;Cdk5rap3-202;Cdk5rap3-211;Cdk5rap3-209;Cdk5rap3-206;Cdk5rap3-207,Cdk5rap3;Cdk5rap3;Cdk5rap3;Cdk5rap3;Cdk5rap3;Cdk5rap3;Cdk5rap3;Cdk5rap3;Cdk5rap3,9254;9254;1516;5627;9150;8865;9187;9124;9172,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,5,5,80280,ENSMUSG00000018669,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1418,cg27700734,-0.0000203,0.0000084,-2.421372264,0.016035812,loss,ns,0.0000326,0.0000143,2.281374873,0.023204158,pos,ns,0.00666001,0.004182056,1.592520393,0.112286939,pos,ns,0.949670756,-0.000191597,0.000143821,-1.332197305,0.183773877,neg,ns,0.842676041,Rpl36-ps3,Rpl36-ps3_Intergenic_upstream,12,12753865,12753914,12753913,12753914,50,+,AGGGGAATTAACATTGTCCCTATTATATTGTCCAATTAACACTTGTCCCG,Distal Intergenic,12,12912022,12912336,315,1,Rpl36-ps3-201,-158108,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,19,20,100043215,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2506,cg17706566,-0.00000581,0.00000313,-1.855068175,0.064535717,loss,ns,0.0000121,0.00000532,2.280927766,0.023230938,pos,ns,0.001565831,0.001559833,1.00384587,0.316235824,pos,ns,0.499988934,-0.0000752,0.0000536,-1.401572356,0.162043376,neg,ns,0.918382608,Pkhd1,Pkhd1_Intron,1,20106622,20106671,20106670,20106671,50,-,GATATGTTATAATAGTGCAATAAATCTGTTAGCTTAAAATCGAATCTCCG,"Intron (Pkhd1-201/Pkhd1, intron 61 of 66)",1,20057779,20618064,560286,2,Pkhd1-201,511393,Pkhd1-201,Pkhd1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,25,241035,ENSMUSG00000043760,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24223,cg12867324,-0.00000182,0.00000111,-1.64179352,0.101646839,loss,ns,0.00000429,0.00000188,2.280927696,0.023230942,pos,ns,0.001910182,0.00055143,3.464047732,0.00060703,pos,ns,3.216789591,-0.0000339,0.000019,-1.790123274,0.074409911,neg,ns,0.032131373,Gm12902,Gm12902_Intergenic_downstream,4,123991033,123991082,123991081,123991082,50,-,AGCAGTTATTCCACAACTGTCTGCGGGCACAATGAACTCCCCCGGGAGCG,Distal Intergenic,4,123926234,123926555,322,1,Gm12902-201,64848,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,34,34,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5590,cg22661567,0.00000816,0.00000501,1.627379998,0.10467235,gain,ns,-0.0000194,0.00000852,-2.280400399,0.023262559,neg,ns,-0.007579185,0.002494657,-3.038167235,0.002582669,neg,ns,2.587931258,0.000301959,0.0000858,3.519704571,0.000496789,pos,ns,0.796411365,Pbx3,Pbx3_Exon,2,34288720,34288769,34288768,34288769,50,+,AGCAGGCCTGCACTTTCGCTTGTAATTCTGTACCTCTCATCTCCCAGACG,"Exon (Pbx3-210/Pbx3, exon 1 of 7)",2,34171457,34372038,200582,2,Pbx3-202,83269,Pbx3-202;Pbx3-201;Pbx3-210;Pbx3-206;Pbx3-207;Pbx3-209;Pbx3-204;Pbx3-205;Pbx3-203,Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,82,18516,ENSMUSG00000038718,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11524,cg01314755,-0.00000284,0.00000246,-1.153921071,0.249421366,loss,ns,0.00000953,0.00000418,2.280245523,0.023271853,pos,ns,0.003184404,0.001224369,2.600854146,0.009744971,pos,ns,2.011219436,-0.0000854,0.0000421,-2.028176677,0.043397012,neg,ns,0.949435048,Shtn1,Shtn1_Intron,19,58979694,58979743,58979694,58979695,50,-,CGGTGAGAGTTATTTTATAAAATGCTACCTCTGAAAAGCTGATTGCCAAA,"Intron (Shtn1-202/Shtn1, intron 14 of 14)",19,58973356,59076069,102714,2,Shtn1-202,96326,Shtn1-202;Shtn1-201,Shtn1;Shtn1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,10,71653,ENSMUSG00000041362,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17286,cg05764166,-0.0000083,0.0000103,-0.807374363,0.420069873,loss,ns,0.0000398,0.0000175,2.280189415,0.023275221,pos,ns,0.000227761,0.005116639,0.044513881,0.964523447,pos,ns,0.01568721,0.0000878,0.000175961,0.499004847,0.618129885,pos,ns,0.825918753,Ankfn1,Ankfn1_Exon,11,89421193,89421242,89421193,89421194,50,-,CGTCTGAGGCAGGGAGCAGGAGAAGAAAGGACACATTGTGACCCATTTCC,"Exon (Ankfn1-208/Ankfn1, exon 19 of 22)",11,89391238,89841266,450029,2,Ankfn1-208,420024,Ankfn1-201;Ankfn1-207;Ankfn1-208;Ankfn1-206;Ankfn1-202;Ankfn1-203,Ankfn1;Ankfn1;Ankfn1;Ankfn1;Ankfn1;Ankfn1,-2245;-2245;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,15,382543,ENSMUSG00000047773,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27714,cg20739027,-0.0000927,0.0000112,-8.300829478,3.23E-15,loss,yes,0.0000432,0.000019,2.279974278,0.023288138,pos,ns,0.012618944,0.005556029,2.271216213,0.023819308,pos,ns,1.62307086,-0.000471506,0.000191071,-2.467698012,0.0141383,neg,ns,0.843296586,Cdh26,Cdh26_Intergenic_downstream,2,178596961,178597010,178597009,178597010,50,-,TAAAACTTTATCTGCTTCAACTTAGTGAATGGCTGCCTTGGGATATACCG,Distal Intergenic,2,178460630,178466572,5943,1,Cdh26-203,136380,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,381409,ENSMUSG00000039155,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27828,cg22763089,-0.0000237,0.00000534,-4.438803876,0.0000126,loss,ns,-0.0000207,0.00000907,-2.279854792,0.023295314,neg,ns,-0.007513316,0.002658471,-2.826179518,0.005016601,neg,ns,2.299590433,0.0000441,0.0000914,0.48282051,0.629563966,pos,ns,0.913492168,Esrrg,Esrrg_Intron,1,188167285,188167334,188167333,188167334,50,-,TTGATTACATTTGCAAATCAAATCAATCCATCAGACATGATCAGGCCTCG,"Intron (Esrrg-203/Esrrg, intron 6 of 7)",1,187609029,188214386,605358,1,Esrrg-203,558256,Esrrg-203;Esrrg-201;Esrrg-202,Esrrg;Esrrg;Esrrg,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,60,26381,ENSMUSG00000026610,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19079,cg14880272,0.0000569,0.00000372,15.30498649,8.92E-40,gain,yes,-0.0000144,0.00000632,-2.279839551,0.02329623,neg,ns,0.003757907,0.001850807,2.030415205,0.043167739,pos,ns,1.364840702,-0.0000154,0.0000636,-0.242045648,0.808904835,neg,ns,0.045791901,Neurod2,Neurod2_fiveUTR,11,98329580,98329629,98329580,98329581,50,-,CGTCTTCAGAGCGCCATGCGAACCGCGGAGCGAGTGTGGCATCTCTACCA,Promoter (<=1kb),11,98325415,98329648,4234,2,Neurod2-201,19,Neurod2-201,Neurod2,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,22,18013,ENSMUSG00000038255,conserved gene and region,11,98329512,98329756,245,*,245,22,0.657142857,0.835658915,0.089795918,5.08E-16,CpGisland,TRUE,U13,Hc-P
2298,cg17312451,-0.0000276,0.0000157,-1.756289175,0.080026453,loss,ns,0.0000608,0.0000267,2.279777792,0.02329994,pos,ns,-0.005568966,0.007816181,-0.71249202,0.476696064,neg,ns,0.321758434,0.000615422,0.000268798,2.289533904,0.022720176,pos,ns,0.301281367,Nova2,Nova2_threeUTR,7,18964645,18964694,18964645,18964646,50,+,CGATAAACGCCATCTCAGCATCTGTGTCTAATGTTGTCTTTTTTGCTTGA,3' UTR,7,18925888,18965319,39432,1,Nova2-201,38757,Nova2-201;Nova2-202,Nova2;Nova2,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,5,384569,ENSMUSG00000030411,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
14766,cg14787959,-0.0000199,0.00000617,-3.224807727,0.001395056,loss,ns,-0.0000239,0.0000105,-2.279721259,0.023303337,neg,ns,-0.002430203,0.003069284,-0.791781759,0.429093369,neg,ns,0.367448197,-0.000174747,0.000105552,-1.65554988,0.098824922,neg,ns,0.728917172,Gm11146,Gm11146_Intron,16,77593904,77593953,77593904,77593905,50,+,CGTTAGGCAGCACAATTCCATCTCTGGTTGATGGGCAGAAAAAGTGGGCA,"Intron (Mir99ahg-207/Mir99ahg-207, intron 7 of 7)",16,77588578,77602094,13517,2,Gm11146-201,8141,Gm11146-201,Gm11146,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,21,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22413,cg17886914,-0.0000155,0.00000499,-3.108884708,0.002052195,loss,ns,0.0000193,0.00000847,2.279718159,0.023303523,pos,ns,-0.002762275,0.002482111,-1.112872982,0.266625196,neg,ns,0.574098813,0.0000608,0.0000854,0.711765907,0.477145024,pos,ns,0.902009281,Dph6,Dph6_Intergenic_downstream,2,114439251,114439300,114439299,114439300,50,-,TGCACATATCACAAAATTATTTCTGCCAAGCTTCCTCTGTGACCTGCCCG,Distal Intergenic,2,114518145,114545891,27747,2,Dph6-204,106640,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,10,66632,ENSMUSG00000057147,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
942,cg02478760,0.00002,0.00000196,10.21006715,2.74E-21,gain,yes,-0.00000759,0.00000333,-2.279602471,0.023310476,neg,ns,0.00207893,0.000974865,2.132530944,0.033748766,pos,ns,1.471742103,-0.0000356,0.0000335,-1.061755499,0.289173149,neg,ns,0.024786002,Gata3,Gata3_Promoter,2,9896007,9896056,9896055,9896056,50,-,TCATTGGAACAAATAGCTAACATTTAACGTTTACACCCGCACTGGCGGCG,Promoter (6-7kb),2,9874702,9890034,15333,2,Gata3-202,-6022,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,12,21,14462,ENSMUSG00000015619,conserved gene and region,2,9895897,9896117,221,*,221,15,0.538461539,0.979609929,0.067873303,2.65E-09,CpGisland,TRUE,U13,Hc-P
17536,cg16297620,0.00000471,0.00000153,3.070540926,0.00232587,gain,ns,-0.00000594,0.0000026,-2.279255544,0.023331336,neg,ns,-0.000616149,0.000762949,-0.80758868,0.419946633,neg,ns,0.376805896,-0.0000228,0.0000262,-0.867792463,0.386179217,neg,ns,0.969312511,Fnbp4,Fnbp4_Exon,2,90767506,90767555,90767506,90767507,50,-,CGCCACTCCTAAAGGCTGGTCCTGCCACTGGGACAGGTACGCACTCTTCT,"Exon (Fnbp4-201/Fnbp4, exon 11 of 17)",2,90745370,90781021,35652,1,Fnbp4-201,22136,Fnbp4-201;Fnbp4-210;Fnbp4-202;Fnbp4-209;Fnbp4-208;Fnbp4-207;Fnbp4-206;Fnbp4-205,Fnbp4;Fnbp4;Fnbp4;Fnbp4;Fnbp4;Fnbp4;Fnbp4;Fnbp4,0;0;0;0;0;0;-550;-1107,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,6,55935,ENSMUSG00000008200,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12820,cg14302062,-0.00000329,0.00000194,-1.699029783,0.090316812,loss,ns,-0.0000075,0.00000329,-2.279095227,0.023340981,neg,ns,0.000034,0.000964009,0.03528499,0.971875202,pos,ns,0.012389499,-0.0000382,0.0000332,-1.153695257,0.249513824,neg,ns,0.046324363,Tmem33,Tmem33_Intergenic_upstream,5,67231723,67231772,67231771,67231772,50,+,GAGCCGTCAGTAATAGGATTATTAAACAAAAACCGTCTCAGGCGCTGGCG,Distal Intergenic,5,67260565,67291461,30897,1,Tmem33-201,-28793,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,22,22,67878,ENSMUSG00000037720,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
21157,cg11022085,0.0000134,0.00000829,1.616579862,0.106986134,gain,ns,0.0000321,0.0000141,2.278983639,0.023347696,pos,ns,0.017027275,0.004125758,4.127066006,0.0000473,pos,ns,4.325424492,-0.000248101,0.000141884,-1.748611909,0.081347939,neg,ns,0.136858637,Gm17304,Gm17304_Exon,5,106575045,106575094,106575045,106575046,50,+,CGCACTGTGAAGTAAATTGTCACACTCTCTATTACAGGATGGTTATCATA,"Exon (Gm29464-201/Gm29464-201, exon 1 of 1)",5,106609098,106609201,104,1,Gm17304-201,-34004,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,35,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5035,cg12623263,-0.0000169,0.00000453,-3.741006771,0.000218321,loss,ns,0.0000175,0.0000077,2.278980217,0.023347902,pos,ns,-0.002162286,0.002254856,-0.958946358,0.338333068,neg,ns,0.470655553,0.0000615,0.0000775,0.793605147,0.428032358,pos,ns,0.913679233,Map3k7,Map3k7_Intergenic_upstream,4,31909383,31909432,31909431,31909432,50,+,ACAGGTAGTTGTAATTCTATTAGCAGCCCATCGACTTCCCTGTGAAATCG,Distal Intergenic,4,31964097,32023467,59371,1,Map3k7-201,-54665,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,4,26409,ENSMUSG00000028284,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8438,cg05322294,0.0000389,0.00000621,6.259990618,1.28E-09,gain,yes,-0.000024,0.0000105,-2.278884058,0.023353691,neg,ns,-0.001629224,0.003090665,-0.52714336,0.598471066,neg,ns,0.222956841,-0.0000107,0.000106288,-0.100782418,0.919788333,neg,ns,0.167681585,Zeb2,Zeb2_Exon,2,45113397,45113446,45113445,45113446,50,-,GGCGGAAAACGGTGCACACCATTCACAGAACTGGAGAACTCCAAGGGGCG,"Exon (Zeb2os-201/Zeb2os-201, exon 3 of 3)",2,44983632,45117395,133764,2,Zeb2-212,3949,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219;Zeb2-211;Zeb2-210;Zeb2-205;Zeb2-223;Zeb2-217;Zeb2-225;Zeb2-204;Zeb2-206;Zeb2-230,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;-3321;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,21,158,24136,ENSMUSG00000026872,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4129,cg06789667,0.0000273,0.0000147,1.851421683,0.065059774,gain,ns,-0.000057,0.000025,-2.278179374,0.023396148,neg,ns,-0.0061638,0.007326661,-0.841283591,0.400837554,neg,ns,0.397031596,-0.000626345,0.000251963,-2.485859346,0.013450526,neg,ns,0.077441557,Syngap1,Syngap1_Exon,17,26946645,26946694,26946693,26946694,50,+,CTGATCCGGGACCGGAGGAGCGAGTCCAGTCGCAACAAACTGCTGAGACG,"Exon (Syngap1-204/Syngap1, exon 3 of 19)",17,26941253,26972434,31182,1,Syngap1-204,5392,Syngap1-204;Syngap1-213;Syngap1-208;Syngap1-202;Syngap1-207;Syngap1-203,Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,18,240057,ENSMUSG00000067629,conserved gene and region,17,26946651,26946900,250,*,250,35,0.748,1.013670065,0.14,1.28E-32,CpGisland,TRUE,U4,Pr-F
8555,cg00920372,0.000022,0.0000235,0.935758,0.350126174,gain,ns,-0.0000909,0.0000399,-2.278032464,0.023405007,neg,ns,0.002469221,0.011684503,0.211324403,0.832772998,pos,ns,0.079473365,-0.000279228,0.000401829,-0.694891338,0.487643901,neg,ns,0.685378167,Btrc,Btrc_Exon,19,45330034,45330083,45330082,45330083,50,+,GGTGACATATCTCTCTTATTGCCCGAATGTAACACACCATCTAATTTACG,"Exon (Gm28578-209/Gm28578-209, exon 6 of 7)",19,45363734,45507736,144003,1,Btrc-204,-33651,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,30,98,12234,ENSMUSG00000025217,conserved gene and region,19,45329908,45330151,244,*,244,14,0.471311475,1.056277056,0.057377049,8.59E-08,CpGisland,TRUE,NA,NRS
11225,cg00752670,0.0000168,0.00000737,2.276817971,0.023478362,gain,ns,0.0000285,0.0000125,2.278009664,0.023406383,pos,ns,0.003939252,0.003665701,1.074624354,0.283378651,pos,ns,0.547632871,-0.0000707,0.000126063,-0.560826865,0.575320694,neg,ns,0.679434221,Satb2,Satb2_Intergenic_upstream,1,57083251,57083300,57083251,57083252,50,+,CGGTAGACTGCAGTTAGGGAGCGTGGCAGGATAATGTATTGTAATGCAGA,Distal Intergenic,1,56969740,56978650,8911,2,Satb2-204,-104601,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,33,212712,ENSMUSG00000038331,mapped to different genes,1,57083151,57083321,171,*,171,10,0.532163743,0.855855856,0.058479532,0.00000878,CpGisland,TRUE,U15,NS
14006,cg20204427,0.0000255,0.00000684,3.7263579,0.00023082,gain,ns,-0.0000265,0.0000116,-2.27785063,0.023415977,neg,ns,-0.00727458,0.003402146,-2.138232657,0.033279436,neg,ns,1.47782404,0.00029108,0.000117,2.487868936,0.013376279,pos,ns,0.814728908,Frmd3,Frmd3_Exon,4,74187744,74187793,74187792,74187793,50,+,CCTGCTCCTCCTCCTTTTGGAGTCAGGTATTGATCTCTCCTTCTTATGCG,"Exon (Frmd3-202/Frmd3, exon 14 of 15)",4,74013442,74202214,188773,1,Frmd3-202,174302,Frmd3-202;Frmd3-201;Frmd3-203,Frmd3;Frmd3;Frmd3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,242506,ENSMUSG00000049122,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11006,cg26107500,0.000107822,0.00000932,11.57235817,5.52E-26,gain,yes,-0.0000361,0.0000158,-2.277840739,0.023416574,neg,ns,0.012062612,0.004637269,2.601231736,0.009734485,pos,ns,2.011687028,-0.000515935,0.000159475,-3.235204434,0.001346848,neg,ns,0.217131621,Gm47104,Gm47104_Promoter,13,56208613,56208662,56208661,56208662,50,+,GATTGGCCGAGGGGGCTGTGAGGGGCCCCTTTCACAGAGGGCTAATTGCG,Promoter (5-6kb),13,56202231,56202937,707,2,Gm47104-201,-5676,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,6,6,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
2593,cg23024952,0.00000979,0.00000617,1.585208238,0.113938557,gain,ns,-0.0000239,0.0000105,-2.277809869,0.023418437,neg,ns,0.004054391,0.003072438,1.319600283,0.187942223,pos,ns,0.72597564,0.0000898,0.000105661,0.850124783,0.395911812,pos,ns,0.069360619,Eif4g1,Eif4g1_fiveUTR,16,20674271,20674320,20674271,20674272,50,+,CGCCACAAGCGACACAAATGAACACGCCTTCTCAGCCCCGCCAGGTGAGG,5' UTR,16,20668313,20679395,11083,1,Eif4g1-220,5958,Eif4g1-220;Eif4g1-208;Eif4g1-201;Eif4g1-206;Eif4g1-216;Eif4g1-202;Eif4g1-217;Eif4g1-207;Eif4g1-218;Eif4g1-225;Eif4g1-214;Eif4g1-203;Eif4g1-222;Eif4g1-221;Eif4g1-205;Eif4g1-212;Eif4g1-204;Eif4g1-215;Eif4g1-219;Eif4g1-210;Eif4g1-211,Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;-4086,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,7,10,208643,ENSMUSG00000045983,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
11310,cg14202441,-0.000013,0.00000505,-2.578435545,0.010386008,loss,ns,0.0000195,0.00000857,2.27780532,0.023418712,pos,ns,-0.002375005,0.002511014,-0.945835138,0.344969319,neg,ns,0.462219529,0.0000939,0.0000864,1.086946734,0.277904765,pos,ns,0.905750246,Gm2568,Gm2568_Promoter,12,57530567,57530616,57530567,57530568,50,-,CGCTTTAATTAAAAACGTGTTCCGGCAGCTCAGAGCTGAATGGGCTTCAG,Promoter (9-10kb),12,57519043,57520624,1582,2,Gm2568-201,-9992,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,2,102632291,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9902,cg14875600,-0.00000558,0.0000128,-0.437113847,0.662333122,loss,ns,0.0000494,0.0000217,2.277728063,0.023423374,pos,ns,0.019879858,0.006353944,3.12874307,0.001922432,pos,ns,2.716149101,-0.000678826,0.000218512,-3.106592056,0.002067685,neg,ns,0.758395599,Gm46574,Gm46574_Intergenic_downstream,17,51464313,51464362,51464313,51464314,50,-,CGTCAAAGTTAATGAGTTTTTAACATAATTTTTAACTGCTCTGAAGAGGT,Distal Intergenic,17,51484292,51484721,430,2,Gm46574-201,20408,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,19,108168316,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21244,cg07720842,-0.00000276,0.00000286,-0.964782471,0.335405785,loss,ns,0.0000111,0.00000485,2.277450405,0.023440139,pos,ns,0.002151988,0.001422085,1.513263393,0.131231582,pos,ns,0.881961637,-0.000104534,0.0000489,-2.137480539,0.033341023,neg,ns,0.926002458,Dock3,Dock3_Exon,9,106952382,106952431,106952382,106952383,50,-,CGTACTTCTGGCTGTGGGACCAGTGTCACACCCAGAAAAGGACCAATCAT,"Exon (Dock3-201/Dock3, exon 32 of 53)",9,106892825,107231909,339085,2,Dock3-201,279478,Dock3-201;Dock3-208;Dock3-202,Dock3;Dock3;Dock3,0;-42;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,9,208869,ENSMUSG00000039716,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18337,cg26487099,-0.000000858,0.00000339,-0.25349722,0.800052045,loss,ns,-0.0000131,0.00000575,-2.277438753,0.023440842,neg,ns,-0.002436161,0.001685172,-1.44564546,0.149286839,neg,ns,0.825978479,0.000123273,0.000058,2.127124115,0.034199065,pos,ns,0.893776792,Tbca,Tbca_Intron,13,94817618,94817667,94817618,94817619,50,-,CGGTTCGCAGCTAATGAGCATGCAGCTGGATTGCAAATGGCTGGATTTAT,"Intron (Tbca-201/Tbca, intron 1 of 3)",13,94788910,94842922,54013,1,Tbca-201,28708,Tbca-201;Tbca-203;Tbca-204,Tbca;Tbca;Tbca,0;0;-67,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,9,21371,ENSMUSG00000042043,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4926,cg23106931,-0.00000324,0.00000116,-2.7898425,0.005599866,loss,ns,0.00000449,0.00000197,2.277406724,0.023442777,pos,ns,0.001096274,0.000577774,1.897411414,0.058702712,pos,ns,1.231341836,-0.00003,0.0000199,-1.510807807,0.131856061,neg,ns,0.968328197,Nfrkb,Nfrkb_threeUTR,9,31403490,31403539,31403538,31403539,50,+,CACCTTTCGCATGCACGGCTTTGAGTCTGTGGTGGGGCCAGTGAAGGGCG,3' UTR,9,31386192,31421333,35142,1,Nfrkb-201,17298,Nfrkb-201;Nfrkb-204;Nfrkb-208;Nfrkb-209;Nfrkb-205;Nfrkb-210;Nfrkb-207;Nfrkb-202,Nfrkb;Nfrkb;Nfrkb;Nfrkb;Nfrkb;Nfrkb;Nfrkb;Nfrkb,0;0;0;0;0;0;6258;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,4,235134,ENSMUSG00000042185,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23812,cg03721697,-0.00000491,0.00000474,-1.034515107,0.301701758,loss,ns,0.0000184,0.00000806,2.277387616,0.023443931,pos,ns,0.006070505,0.002361201,2.570939246,0.010608621,pos,ns,1.974341054,-0.000152607,0.0000812,-1.879356289,0.061133773,neg,ns,0.929644573,Mbnl2,Mbnl2_threeUTR,14,120430272,120430321,120430272,120430273,50,-,CGATACAATTAAATTTTGTTCAGAAAGTTTGTTTTAAAGTTTATTTTAAG,3' UTR,14,120275669,120431697,156029,1,Mbnl2-201,154603,Mbnl2-201;Mbnl2-204;Mbnl2-202;Mbnl2-203;Mbnl2-208;Mbnl2-205,Mbnl2;Mbnl2;Mbnl2;Mbnl2;Mbnl2;Mbnl2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,16,105559,ENSMUSG00000022139,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19,cg01438021,0.00000975,0.00000316,3.084455043,0.002222895,gain,ns,-0.0000122,0.00000537,-2.277328872,0.02344748,neg,ns,-0.003134967,0.00157265,-1.993430125,0.047090457,neg,ns,1.327067094,0.0000778,0.0000541,1.4392884,0.151077788,pos,ns,0.903937225,Patz1,Patz1_Exon,11,3306221,3306270,3306269,3306270,50,+,AGGTTTCTCCTCTGCCTCCTACTTAAAGGTCCATGTTAAAACCCACCACG,"Exon (Patz1-205/Patz1, exon 4 of 5)",11,3289167,3309083,19917,1,Patz1-204,17054,Patz1-204;Patz1-207;Patz1-205;Patz1-201;Patz1-202;Patz1-206;Patz1-212,Patz1;Patz1;Patz1;Patz1;Patz1;Patz1;Patz1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,9,56218,ENSMUSG00000020453,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16654,cg13274713,0.0000685,0.0000057,12.00581286,1.58E-27,gain,yes,-0.0000221,0.00000969,-2.27705726,0.023463894,neg,ns,0.002112131,0.002838514,0.744097354,0.457381219,pos,ns,0.339721672,-0.0000774,0.0000976,-0.792902308,0.428441151,neg,ns,0.114981549,Tbx2,Tbx2_fiveUTR,11,85832802,85832851,85832850,85832851,50,-,TGAGATAGTCACAGTTTTCCAGAGATCACGACAAGATCTAACCAGTCGCG,Promoter (<=1kb),11,85832551,85841948,9398,1,Tbx2-201,251,Tbx2-201,Tbx2,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,12,14,21385,ENSMUSG00000000093,mapped to different genes,11,85832848,85833430,583,*,583,90,0.804459691,0.963848782,0.154373928,7.11E-88,CpGisland,TRUE,U3,Pr-B
6821,cg20224547,-0.0000201,0.00000936,-2.149229787,0.032390056,loss,ns,0.0000362,0.0000159,2.276981799,0.023468456,pos,ns,0.013811115,0.004657115,2.965594759,0.003255633,pos,ns,2.487364507,-0.000427591,0.000160158,-2.669812395,0.007989391,neg,ns,0.848634208,Psmb7,Psmb7_Intron,2,38602739,38602788,38602739,38602740,50,+,CGCAGAGACACTTTCAATTTGTAATTGAGTTCTATGCTGAATTAATCAGC,"Intron (Psmb7-201/Psmb7, intron 6 of 7)",2,38588036,38644087,56052,2,Psmb7-201,41299,Psmb7-201,Psmb7,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,9,19177,ENSMUSG00000026750,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26237,cg12303330,0.000137022,0.00000869,15.76165215,1.63E-41,gain,yes,-0.0000336,0.0000148,-2.276626108,0.023489969,neg,ns,0.008062276,0.004326769,1.86334772,0.063358809,pos,ns,1.198192995,-0.0000159,0.000148797,-0.106675182,0.915115672,neg,ns,0.598591282,Smurf1,Smurf1_Exon,5,144899158,144899207,144899206,144899207,50,-,CCACGAACTGCATCAGTATCTGAGGGGTTTAGTTTGCATAGATCCAAACG,"Exon (Smurf1-203/Smurf1, exon 5 of 19)",5,144876495,144965839,89345,2,Smurf1-203,66632,Smurf1-203;Smurf1-201;Smurf1-202;Smurf1-205,Smurf1;Smurf1;Smurf1;Smurf1,0;0;0;-1164,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,75788,ENSMUSG00000038780,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16589,cg18331426,-0.00000729,0.00000446,-1.632553772,0.103578171,loss,ns,0.0000173,0.00000758,2.276584314,0.023492498,pos,ns,0.005103838,0.002221499,2.297475068,0.022257606,pos,ns,1.652521552,-0.000171937,0.0000764,-2.250572727,0.025113281,neg,ns,0.906122571,Tab3,Tab3_Exon,X,85615306,85615355,85615306,85615307,50,-,CGCTCTGCAGCACCAGAACCTATTCAGCCCATTTCAGTGATACCAGGCTC,"Exon (Tab3-201/Tab3, exon 4 of 9)",20,85574022,85634469,60448,1,Tab3-201,41284,Tab3-201;Tab3-202;Tab3-203,Tab3;Tab3;Tab3,0;41272;41156,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,66724,ENSMUSG00000035476,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U5,En-Sd
19175,cg21016222,-0.00000162,0.000000533,-3.045307301,0.002523889,loss,ns,-0.00000206,0.000000905,-2.276442882,0.023501058,neg,ns,0.00040492,0.000265097,1.527440563,0.127671142,pos,ns,0.893907258,-0.0000237,0.00000912,-2.604243649,0.009651199,neg,ns,0.986883111,Thra,Thra_Exon,11,98764351,98764400,98764351,98764352,50,+,CGTCAACCACCGCAAACACAACATTCCGCACTTCTGGCCCAAGCTGCTGA,"Exon (Thra-201/Thra, exon 9 of 10)",11,98741811,98769006,27196,1,Thra-201,22540,Nr1d1-201;Nr1d1-202;Thra-201;Thra-202;Thra-203,Nr1d1;Nr1d1;Thra;Thra;Thra,0;6026;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,13,18,21833,ENSMUSG00000058756,conserved gene and region,11,98764222,98764378,157,*,157,10,0.592356688,0.751196172,0.063694268,0.00000418,CpGisland,TRUE,U10,Tr-S
22593,cg04585822,0.0000491,0.00000946,5.193371691,0.000000375,gain,yes,0.0000366,0.0000161,2.276346911,0.023506868,pos,ns,0.017002348,0.004707396,3.611837078,0.000354523,pos,ns,3.450355311,-0.00018345,0.000161887,-1.133196751,0.258007278,neg,ns,0.63605593,Otop2,Otop2_Exon,11,115318945,115318994,115318945,115318946,50,-,CGGAAGGCCTTGTCCTTCAGCTTACCCACCAGCTTGGGGTTGAGGCTGCT,"Exon (Ush1g-201/Ush1g, exon 2 of 3)",11,115307163,115332303,25141,1,Otop2-201,11782,Otop2-201;Otop2-204;Otop2-203;Otop2-202;Ush1g-201,Otop2;Otop2;Otop2;Otop2;Ush1g,0;-3536;-3767;-3931;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,237987,ENSMUSG00000050201,mapped to different genes,11,115318740,115318946,207,*,207,26,0.700483092,1.032220944,0.125603865,6.58E-23,CpGisland,TRUE,U13,Hc-P
16007,cg24482288,0.00000111,0.00000392,0.284367166,0.776318874,gain,ns,-0.0000152,0.00000666,-2.276327318,0.023508054,neg,ns,-0.007620749,0.001950342,-3.907390399,0.000114589,neg,ns,3.940857739,0.000181174,0.0000671,2.701185014,0.007289312,pos,ns,0.883560529,Nanos3,Nanos3_Exon,8,84178896,84178945,84178896,84178897,50,+,CGGTCGATGGTTTGCCTGAGCTGCCCAAACTCACCGACAGGTTGAATGTT,"Exon (Mir181c-201/Mir181c-201, exon 1 of 1)",8,84173731,84185217,11487,2,Nanos3-203,6272,Nanos3-203;Nanos3-201;Nanos3-202,Nanos3;Nanos3;Nanos3,0;-2344;-2344,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,244551,ENSMUSG00000056155,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18391,cg19597876,-0.00000384,0.00000231,-1.662813968,0.097360352,loss,ns,0.00000893,0.00000392,2.275895836,0.023534193,pos,ns,0.002040322,0.00114931,1.775258425,0.076836334,pos,ns,1.114433366,-0.0000886,0.0000395,-2.241439238,0.025705028,neg,ns,0.94831154,Slc9a9,Slc9a9_Intron,9,95085935,95085984,95085983,95085984,50,-,AATTGCCTCTTGTCTCAGCAAGGATGTAATTGATTCTTGGGCACTTAACG,"Intron (Slc9a9-201/Slc9a9, intron 12 of 15)",9,94669909,95230445,560537,1,Slc9a9-201,416026,Slc9a9-201,Slc9a9,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,3,331004,ENSMUSG00000031129,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23488,cg13750279,0.00000411,0.00000691,0.593965297,0.552968501,gain,ns,0.0000267,0.0000117,2.275801241,0.023539927,pos,ns,0.001519703,0.003441084,0.441634847,0.65906136,pos,ns,0.18107415,-0.0000832,0.000118339,-0.703426959,0.482317681,neg,ns,0.894809535,Cacna1c,Cacna1c_Exon,6,118637732,118637781,118637780,118637781,50,-,TTACCTCGGTGATTGCTATATCAACAATGCTACCCACAACAATCAAGGCG,"Exon (Cacna1c-225/Cacna1c, exon 27 of 43)",6,118587240,119196231,608992,2,Cacna1c-207,558450,Cacna1c-207;Cacna1c-205;Cacna1c-215;Cacna1c-224;Cacna1c-225;Cacna1c-226;Cacna1c-227;Cacna1c-202;Cacna1c-201;Cacna1c-203;Cacna1c-212;Cacna1c-216;Cacna1c-210;Cacna1c-206;Cacna1c-208;Cacna1c-213;Cacna1c-217;Cacna1c-219;Cacna1c-220;Cacna1c-209;Cacna1c-204;Cacna1c-214;Cacna1c-222,Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,13,15,12288,ENSMUSG00000051331,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2017,cg16163981,0.0000116,0.00000761,1.529382236,0.127189446,gain,ns,0.0000294,0.0000129,2.275519959,0.023556983,pos,ns,0.012511811,0.003786967,3.303913582,0.001065111,pos,ns,2.972605038,-0.00039627,0.000130233,-3.042767532,0.002544655,neg,ns,0.110977417,Kcnf1,Kcnf1_Exon,12,17175801,17175850,17175849,17175850,50,-,TGCAACAGTCGTCCAGGAACTTGAGGTCCACCTTCCAGAAGTCCATCTCG,"Exon (Kcnf1-201/Kcnf1, exon 1 of 1)",12,17172100,17176888,4789,2,Kcnf1-201,1038,Kcnf1-201,Kcnf1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,382571,ENSMUSG00000051726,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
19766,cg21455493,-0.000114135,0.0000164,-6.977860229,1.82E-11,loss,yes,-0.0000632,0.0000278,-2.275157319,0.02357899,neg,ns,0.054043047,0.008140945,6.638424063,1.42E-10,pos,yes,9.848409127,-0.00167296,0.000279966,-5.975573031,6.29E-09,neg,yes,0.658595676,Ppp4r3a,Ppp4r3a_threeUTR,12,101045541,101045590,101045541,101045542,50,-,CGTCTTCGGTTGGCAAGATTAAATATTGTGTTTGTATTTTGGTTTCTTTG,3' UTR,12,101039409,101083663,44255,2,Ppp4r3a-201,38073,Ppp4r3a-201;Ppp4r3a-205;Ppp4r3a-202;Ppp4r3a-208;Ppp4r3a-206,Ppp4r3a;Ppp4r3a;Ppp4r3a;Ppp4r3a;Ppp4r3a,0;0;0;-1996;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,10,68734,ENSMUSG00000041846,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11994,cg24492614,0.00000973,0.00000192,5.074369409,0.000000671,gain,yes,-0.00000741,0.00000326,-2.275119963,0.023581258,neg,ns,0.001172119,0.000954084,1.228528315,0.220180544,pos,ns,0.65722106,-0.0000267,0.0000328,-0.814008226,0.416265058,neg,ns,0.04673362,Fam241b,Fam241b_Intron,10,62129784,62129833,62129832,62129833,50,-,TATTATTATTTTAGCAAACACTGGAGACAGGTGGGGCTTTCTTTTCGTCG,"Intron (Fam241b-201/Fam241b, intron 2 of 2)",10,62108835,62139870,31036,2,Fam241b-201,10037,Fam241b-201;Fam241b-211;Fam241b-207;Fam241b-210;Fam241b-205;Neurog3-201;Neurog3-202;Neurog3-203,Fam241b;Fam241b;Fam241b;Fam241b;Fam241b;Neurog3;Neurog3;Neurog3,0;0;0;0;14087;-3257;-3265;-3342,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,4,69894,ENSMUSG00000020083,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
18611,cg24717141,0.000042,0.00000517,8.126324911,1.07E-14,gain,yes,-0.00002,0.00000878,-2.275105173,0.023582156,neg,ns,-0.003751811,0.002571153,-1.459193852,0.145524282,neg,ns,0.837064536,0.000250667,0.0000884,2.834902482,0.004885064,pos,ns,0.153187327,Hoxb4,Hoxb4_fiveUTR,11,96318700,96318749,96318700,96318701,50,+,CGGAAACAGGAAAACGAGTCAGGGGTCGGAATAAATTTTAGTATATTTTG,Promoter (<=1kb),11,96318267,96321638,3372,1,Hoxb4-201,433,Hoxb3-202;Hoxb4-201,Hoxb3;Hoxb4,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,6,15412,ENSMUSG00000038692,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
18012,cg12084468,0.00000237,0.00000318,0.744719995,0.457005194,gain,ns,0.0000123,0.00000541,2.274990671,0.023589109,pos,ns,-0.000134656,0.001584181,-0.085000079,0.932316196,neg,ns,0.030436771,0.000114909,0.0000545,2.109193548,0.035729498,pos,ns,0.049113416,Elk3,Elk3_Intron,10,93309758,93309807,93309806,93309807,50,+,CTGTCTGCTGCCAGTTTCAAAGCGGAAGCGCATGGCAATTAGTCTTGCCG,"Intron (Elk3-201/Elk3, intron 1 of 4)",10,93247414,93311135,63722,2,Elk3-201,1328,Elk3-201;Elk3-202;Elk3-204;Elk3-203,Elk3;Elk3;Elk3;Elk3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,7,13713,ENSMUSG00000008398,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5076,cg19469233,-0.00000879,0.00000625,-1.407979425,0.160139175,loss,ns,-0.0000241,0.0000106,-2.274709958,0.023606162,neg,ns,-0.000647069,0.003108439,-0.208165332,0.835236574,neg,ns,0.078190497,-0.000224778,0.000106899,-2.102712561,0.036296934,neg,ns,0.836442846,Prrc2b,Prrc2b_Exon,2,32183125,32183174,32183173,32183174,50,+,ATTCCTAGACATGGCTTACAGAGTCTTGGGAAAGTTGCTGCAGCCCGGCG,"Exon (Prrc2b-201/Prrc2b, exon 3 of 30)",2,32151082,32234537,83456,1,Prrc2b-201,32043,Prrc2b-201;Prrc2b-202;Prrc2b-206,Prrc2b;Prrc2b;Prrc2b,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,6,227723,ENSMUSG00000039262,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20453,cg18989243,-0.00000209,0.0000051,-0.409648464,0.682346758,loss,ns,-0.0000197,0.00000867,-2.274591359,0.02361337,neg,ns,-0.009198361,0.002538591,-3.623412612,0.000339641,neg,ns,3.468980335,0.000144347,0.0000873,1.653425584,0.099256542,pos,ns,0.077620449,Csde1,Csde1_threeUTR,3,103058147,103058196,103058195,103058196,50,+,AATGGAAGCGAATAAAGTTTTACTGATTTTTGAGACACTAGCACCTAGCG,3' UTR,3,103020426,103058186,37761,1,Csde1-201,37721,Csde1-201;Csde1-211;Csde1-207;Csde1-214;Csde1-215;Csde1-216;Csde1-206;Csde1-210;Csde1-208;Nras-201;Nras-209;Nras-208;Nras-206;Nras-205;Nras-204;Nras-203;Nras-202;Nras-207,Csde1;Csde1;Csde1;Csde1;Csde1;Csde1;Csde1;Csde1;Csde1;Nras;Nras;Nras;Nras;Nras;Nras;Nras;Nras;Nras,0;0;0;0;0;0;0;0;2093;-89;-152;-171;-398;-400;-547;-707;-707;-792,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,10,229663,ENSMUSG00000068823,mapped to different genes,3,103058024,103058374,351,*,351,25,0.552706553,0.988175676,0.071225071,1.21E-15,CpGisland,TRUE,NA,NRS
24647,cg23048326,-0.000000623,0.00000194,-0.320418408,0.748867045,loss,ns,-0.00000751,0.0000033,-2.274010947,0.023648673,neg,ns,-0.000507334,0.000967996,-0.524108076,0.60057789,neg,ns,0.22143066,-0.0000333,0.0000333,-1.000271414,0.31795931,neg,ns,0.94450814,R3hdm2,R3hdm2_Exon,10,127462260,127462309,127462260,127462261,50,-,CGAGAGAGAATATTTGCCCGAGAGGTAAGTGTAGCATCTGAGAGTTGTCA,"Exon (R3hdm2-212/R3hdm2, exon 12 of 27)",10,127380662,127499360,118699,1,R3hdm2-212,81598,R3hdm2-212;R3hdm2-202;R3hdm2-204;R3hdm2-201;R3hdm2-218;R3hdm2-208;R3hdm2-210;R3hdm2-205;R3hdm2-203;R3hdm2-211;R3hdm2-207;R3hdm2-216;R3hdm2-221,R3hdm2;R3hdm2;R3hdm2;R3hdm2;R3hdm2;R3hdm2;R3hdm2;R3hdm2;R3hdm2;R3hdm2;R3hdm2;R3hdm2;R3hdm2,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,8,71750,ENSMUSG00000025404,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19370,cg08711810,-0.0000335,0.00000722,-4.63590075,0.00000524,loss,ns,0.0000279,0.0000123,2.27369353,0.023668,pos,ns,0.00248561,0.003594445,0.691514127,0.489760052,pos,ns,0.310016642,-0.000274171,0.000123613,-2.217983092,0.027280547,neg,ns,0.87801646,Cdh8,Cdh8_Exon,8,99111682,99111731,99111730,99111731,50,+,TTCCATTTTCACATAAAAATGCCTCATATTCGGATGCGAATTCAGGGGCG,"Exon (Cdh8-207/Cdh8, exon 9 of 13)",8,99024471,99416427,391957,2,Cdh8-207,304696,Cdh8-207;Cdh8-204;Cdh8-201;Cdh8-206;Cdh8-203,Cdh8;Cdh8;Cdh8;Cdh8;Cdh8,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,16,12564,ENSMUSG00000036510,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27912,cg16382030,0.000087,0.0000144,6.065898494,3.82E-09,gain,yes,-0.0000554,0.0000244,-2.273591196,0.023674233,neg,ns,0.03721946,0.00714239,5.211065196,0.000000343,pos,ns,6.464323464,-0.001413504,0.000245626,-5.754694217,2.08E-08,neg,yes,0.443879481,Prox1,Prox1_fiveUTR,1,190162212,190162261,190162212,190162213,50,-,CGGCTTAAGAGGGCTGTGCTGTCATGGTCAGGCATCACTGGACGGTTATT,5' UTR,1,190118035,190170714,52680,2,Prox1-202,8453,Prox1-202;Prox1-201;Prox1-203,Prox1;Prox1;Prox1,0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,59,19130,ENSMUSG00000010175,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4718,cg15411708,0.0000501,0.00000689,7.266996122,3.00E-12,gain,yes,-0.0000266,0.0000117,-2.273493962,0.023680158,neg,ns,-0.004617287,0.003430832,-1.345821463,0.179343526,neg,ns,0.746314297,0.000112332,0.000117986,0.952075202,0.34180057,pos,ns,0.697990193,Ube2h,Ube2h_Exon,6,30242537,30242586,30242537,30242538,50,+,CGCTTCATCAATGTTGGGATGGAAAATTTTATTCATGAATCCTGTAAAAA,"Exon (Ube2h-202/Ube2h, exon 4 of 7)",6,30211289,30304539,93251,2,Ube2h-202,61953,Ube2h-202;Ube2h-203;Ube2h-201;Ube2h-204,Ube2h;Ube2h;Ube2h;Ube2h,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,2,22214,ENSMUSG00000039159,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25786,cg01518594,0.000066,0.00000497,13.28730695,3.39E-32,gain,yes,-0.0000192,0.00000844,-2.273446477,0.023683051,neg,ns,0.001139867,0.002471621,0.461181825,0.644991564,pos,ns,0.190445965,0.000101964,0.000085,1.199590139,0.231214589,pos,ns,0.118530917,Uncx,Uncx_fiveUTR,5,139543759,139543808,139543807,139543808,50,+,CAGGTATAATTAGCAATCGATATGGAAAACGTTTCCCTGCACCCAGCACG,Promoter (<=1kb),5,139543494,139548179,4686,1,Uncx-201,265,Uncx-201;Uncx-202,Uncx;Uncx,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,88,22255,ENSMUSG00000029546,conserved gene but different region,5,139543584,139544742,1159,*,1159,116,0.671268335,0.890168971,0.100086281,7.68E-88,CpGisland,TRUE,U13,Hc-P
19369,cg11387509,-0.0000173,0.00000646,-2.673190035,0.007911216,loss,ns,0.000025,0.000011,2.27306067,0.023706573,pos,ns,-0.004853551,0.003216572,-1.50892034,0.132337633,neg,ns,0.878316637,-0.00000701,0.000110618,-0.063363559,0.949517841,neg,ns,0.88928577,Cdh8,Cdh8_Exon,8,99111670,99111719,99111718,99111719,50,-,CTTGGCCGGGTTTTCCATTTTCACATAAAAATGCCTCATATTCGGATGCG,"Exon (Cdh8-207/Cdh8, exon 9 of 13)",8,99024471,99416427,391957,2,Cdh8-207,304708,Cdh8-207;Cdh8-204;Cdh8-201;Cdh8-206;Cdh8-203,Cdh8;Cdh8;Cdh8;Cdh8;Cdh8,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,16,12564,ENSMUSG00000036510,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9710,cg25204951,-0.00000547,0.00000417,-1.311388902,0.190696859,loss,ns,0.0000161,0.00000708,2.273046444,0.023707441,pos,ns,0.004932594,0.002074614,2.377595707,0.018032151,pos,ns,1.743952475,-0.000219877,0.0000713,-3.081842762,0.002241902,neg,ns,0.907196177,Gm7481,Gm7481_Intergenic_upstream,12,50158033,50158082,50158033,50158034,50,+,CGCTATATGAATACATTAGAAGAGGATTACTCTGATCGAGACTTCACAAG,Distal Intergenic,12,49840757,49841751,995,2,Gm7481-201,-316282,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,27,37,665077,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12062,cg18361975,-0.0000015,0.00000295,-0.507136714,0.612419456,loss,ns,-0.0000114,0.00000501,-2.272841087,0.02371997,neg,ns,-0.001551298,0.001467464,-1.057127954,0.29127628,neg,ns,0.535694881,0.0000179,0.0000505,0.354906999,0.722900594,pos,ns,0.943245264,Efna5,Efna5_Intron,17,62625826,62625875,62625874,62625875,50,-,TTTCAATTCCCTGCAGTGTGAAATATGAACTTGCCAACAAATGGCCAGCG,"Intron (Efna5-201/Efna5, intron 2 of 4)",17,62604184,62881317,277134,2,Efna5-201,255442,Efna5-201;Efna5-202,Efna5;Efna5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,21,13640,ENSMUSG00000048915,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9891,cg20536476,0.0000266,0.0000078,3.40962079,0.000736622,gain,ns,-0.0000301,0.0000133,-2.27271694,0.023727547,neg,ns,0.007162141,0.003882815,1.844574297,0.066053379,pos,ns,1.180104962,-0.000392973,0.00013353,-2.942960434,0.003496279,neg,ns,0.676697384,Gm46574,Gm46574_Intergenic_downstream,17,51398777,51398826,51398825,51398826,50,-,CTACTCTGTTTTAGCCTTTCTGGTAATTAATCATTTATTCATATGTGACG,Distal Intergenic,17,51484292,51484721,430,2,Gm46574-201,85944,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,19,108168316,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6754,cg24595223,0.00000022,0.00000182,0.120767393,0.903953515,gain,ns,0.00000703,0.00000309,2.272514954,0.023739879,pos,ns,0.002965789,0.000906101,3.273132659,0.001183771,pos,ns,2.926732392,-0.0000402,0.0000312,-1.289519188,0.198178905,neg,ns,0.049043772,Lhx2,Lhx2_Intron,2,38347948,38347997,38347948,38347949,50,+,CGGGAGGAGGGTGCCCATGTTTATCACCGAGTGAGATGACTAATTACACC,"Intron (Lhx2-203/Lhx2, intron 1 of 4)",2,38339281,38369199,29919,1,Lhx2-203,8667,Lhx2-203;Lhx2-204;Lhx2-202;Lhx2-201;Lhx2-207;Lhx2-205,Lhx2;Lhx2;Lhx2;Lhx2;Lhx2;Lhx2,0;0;0;0;-3771;-4535,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,33,16870,ENSMUSG00000000247,mapped to different genes,2,38347822,38348178,357,*,357,27,0.518207283,1.126841244,0.075630252,1.55E-17,CpGisland,TRUE,U3,Pr-B
7509,cg03572284,0.000024,0.00000724,3.318840482,0.001011639,gain,ns,-0.000028,0.0000123,-2.272475378,0.023742296,neg,ns,0.002421971,0.003604005,0.67202206,0.50207018,pos,ns,0.299235572,-0.0000941,0.000123941,-0.759172701,0.44832612,neg,ns,0.094966258,Zbtb20,Zbtb20_Intron,16,42910274,42910323,42910322,42910323,50,+,TTCATGCTTTGCCATGCCCTGTAGCTAAAACAATTTGGTACTGAGTGACG,"Intron (Zbtb20-209/Zbtb20, intron 1 of 7)",16,42875881,43463175,587295,1,Zbtb20-209,34393,Zbtb20-209;Zbtb20-210;Zbtb20-211;Zbtb20-217;Zbtb20-218;Zbtb20-204,Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,98,56490,ENSMUSG00000022708,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26895,cg05937313,0.0000372,0.00000758,4.903895198,0.00000152,gain,yes,-0.0000293,0.0000129,-2.27197604,0.02377281,neg,ns,0.005463017,0.003771947,1.448327986,0.148536004,pos,ns,0.828168263,-0.00028195,0.000129717,-2.17358059,0.030493259,neg,ns,0.610651578,Prdm16,Prdm16_Intron,4,154473560,154473609,154473608,154473609,50,-,ATTGAGCCTTAATAATGTCTTCCATCCATTTTCAGCGAGCCCTTAACACG,"Intron (Prdm16-201/Prdm16, intron 3 of 16)",4,154316125,154636866,320742,2,Prdm16-201,163257,Prdm16-201;Prdm16-202;Prdm16-203;Prdm16-204;Prdm16-205;Prdm16-206;Prdm16-210;Prdm16-207;Prdm16-209;Prdm16-212,Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,32,70673,ENSMUSG00000039410,conserved gene and region,4,154473555,154473788,234,*,234,15,0.542735043,0.890410959,0.064102564,5.84E-09,CpGisland,TRUE,U11,Tr-P
21671,cg20998949,0.0000287,0.00000686,4.179803758,0.000038,gain,ns,-0.0000265,0.0000117,-2.271891052,0.023778007,neg,ns,-0.00775154,0.00341404,-2.270488997,0.023863884,neg,ns,1.622258866,0.0003172,0.000117409,2.701676339,0.007278802,pos,ns,0.879132938,Zfhx3,Zfhx3_Intron,8,108801636,108801685,108801684,108801685,50,+,TCTCTAATCATCCCATAATGGCTTTAGTATGAACAATCAGGTACAAATCG,"Intron (Zfhx3-204/Zfhx3, intron 9 of 15)",8,107942644,108961630,1018987,1,Zfhx3-204,858992,Zfhx3-204;Zfhx3-202;Zfhx3-201,Zfhx3;Zfhx3;Zfhx3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,114,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2913,cg03619501,-0.00000733,0.00000266,-2.749781714,0.006313613,loss,ns,0.0000103,0.00000453,2.271747016,0.023786817,pos,ns,0.00227994,0.001325883,1.719563666,0.086509912,pos,ns,1.062934132,-0.000103851,0.0000456,-2.277590236,0.023431695,neg,ns,0.930159173,Lrmda,Lrmda_Intron,14,22046608,22046657,22046656,22046657,50,+,TGTTGGATCTATTATTGGCATAAGCCAGTGTAAGACATCTGTCTTTGTCG,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,26896,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206,Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1199,cg08700093,-0.0000114,0.00000845,-1.354395342,0.176596644,loss,ns,0.0000326,0.0000143,2.271469399,0.023803805,pos,ns,0.013807474,0.004203541,3.284724241,0.001137714,pos,ns,2.943966886,-0.000274606,0.000144559,-1.899607178,0.058412638,neg,ns,0.539025842,Bcor,Bcor_Exon,X,12048524,12048573,12048524,12048525,50,+,CGTTGTTTTTTAGGATGGAGCCCTGTTAATTCAATGCACACCTTCAGGTT,"Exon (Bcor-202/Bcor, exon 8 of 15)",20,12036740,12080553,43814,2,Bcor-202,31980,Bcor-202;Bcor-203;Bcor-204;Bcor-206;Bcor-201,Bcor;Bcor;Bcor;Bcor;Bcor,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,74,71458,ENSMUSG00000040363,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15123,cg02447322,-0.00000878,0.0000114,-0.768044688,0.443045282,loss,ns,0.0000441,0.0000194,2.271457406,0.02380454,pos,ns,0.005891262,0.005687633,1.035801943,0.301101856,pos,ns,0.521286567,-0.000228347,0.000195597,-1.167435542,0.243931685,neg,ns,0.700965589,Gm48470,Gm48470_Intergenic_downstream,13,79255549,79255598,79255597,79255598,50,+,GAAATCAGACTCTCATTGGGGTTGGTAAAAGGTCACAGCTGACAGACACG,Distal Intergenic,13,79441143,79441407,265,2,Gm48470-201,185809,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,20,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2469,cg08317941,-0.00000657,0.0000115,-0.569831349,0.569204799,loss,ns,0.0000445,0.0000196,2.271043574,0.023829884,pos,ns,0.011766922,0.005740007,2.04998371,0.041206952,pos,ns,1.385029513,-0.000448672,0.000197398,-2.272927334,0.023714707,neg,ns,0.698742322,Gm4849,Gm4849_Intergenic_downstream,1,19700062,19700111,19700062,19700063,50,-,CGAGTTTAAAGCATAAAATCACCAGGGGAAATAAGAAGAGTTTCATCTCG,Distal Intergenic,1,19330939,19333184,2246,1,Gm4849-201,369172,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,10,226901,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23182,cg23507108,0.000128023,0.0000169,7.557071717,4.68E-13,gain,yes,-0.0000654,0.0000288,-2.270768073,0.023846769,neg,ns,0.025006301,0.008431593,2.965785953,0.003253667,pos,ns,2.487626919,-0.000756865,0.000289962,-2.610222728,0.009487753,neg,ns,0.502615045,Rnf220,Rnf220_Intron,4,117391697,117391746,117391697,117391698,50,+,CGATTAGCGGTCTCAAATGAAATATCGAACATTCAGCGTTTAGGTCCTGA,"Intron (Rnf220-201/Rnf220, intron 2 of 14)",4,117271463,117497052,225590,2,Rnf220-201,105306,Rnf220-201;Rnf220-207,Rnf220;Rnf220,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27582,cg14103663,-0.00000569,0.00000557,-1.021706055,0.307716696,loss,ns,0.0000215,0.00000946,2.270691124,0.023851487,pos,ns,0.001759363,0.002770163,0.635111646,0.525824093,pos,ns,0.279159519,-0.0000141,0.0000953,-0.148379876,0.882139451,neg,ns,0.572368655,Tshz2,Tshz2_threeUTR,2,170071411,170071460,170071459,170071460,50,+,TCTCCATTAAATTAACGTTATGGATTTTTAACGGATGTCTTAATTATACG,3' UTR,2,169884893,170071816,186924,1,Tshz2-203,186518,Tshz2-203;Tshz2-205,Tshz2;Tshz2,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,8,30,228911,ENSMUSG00000047907,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8401,cg25476259,0.0000194,0.00000782,2.483088947,0.013553483,gain,ns,-0.0000302,0.0000133,-2.270267664,0.023877466,neg,ns,0.00165644,0.003892377,0.425559926,0.670723828,pos,ns,0.173456265,0.000127332,0.000133859,0.951244221,0.342221465,pos,ns,0.861085651,Zeb2,Zeb2_threeUTR,2,45095977,45096026,45095977,45095978,50,-,CGTCACACCACTTTAGTTCAACAGTGCCTGTCGAATGGGCATCAGCAGAT,3' UTR,2,44983632,45117395,133764,2,Zeb2-212,21369,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219;Zeb2-211,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,10,158,24136,ENSMUSG00000026872,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3782,cg07017109,0.0000209,0.00000753,2.771406535,0.005918717,gain,ns,-0.000029,0.0000128,-2.270079869,0.023888995,neg,ns,0.012954025,0.003748453,3.45583228,0.00062512,pos,ns,3.204036526,-0.0000188,0.000128909,-0.145759827,0.884205722,neg,ns,0.712115008,Zmiz1,Zmiz1_Intron,14,25421781,25421830,25421829,25421830,50,+,GAATCGATTTGTCTCTGACTGATTTCCCTGACGTCTAGTTTTCTTCTCCG,"Intron (Zmiz1os1-202/Zmiz1os1-202, intron 2 of 3)",14,25459185,25538492,79308,1,Zmiz1-206,-37355,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,15,328365,ENSMUSG00000007817,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16694,cg26476447,-0.00000216,0.00000139,-1.557705069,0.120323461,loss,ns,0.00000536,0.00000236,2.270060241,0.0238902,pos,ns,0.002436624,0.000691316,3.524617666,0.000488018,pos,ns,3.311564503,-0.0000752,0.0000238,-3.164252741,0.001709096,neg,ns,0.956147459,Ift43,Ift43_Intron,12,86153752,86153801,86153752,86153753,50,+,CGCAGCAGCTCATGAATATGAAACGCCCATGATGCCACCTCAGTGGACTT,"Intron (Ift43-201/Ift43, intron 4 of 7)",12,86082563,86162458,79896,1,Ift43-201,71189,Ift43-201;Ift43-205;Ift43-206;Ift43-207;Ift43-203;Ift43-202,Ift43;Ift43;Ift43;Ift43;Ift43;Ift43,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,5,76411,ENSMUSG00000007867,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11138,cg05575054,0.0000616,0.00000452,13.62099385,1.96E-33,gain,yes,-0.0000174,0.00000768,-2.269555937,0.023921185,neg,ns,0.002135236,0.002249547,0.949184541,0.343266135,pos,ns,0.46436904,0.0000836,0.0000774,1.081234439,0.28043324,pos,ns,0.075897495,Adrb1,Adrb1_Exon,19,56723415,56723464,56723415,56723416,50,+,CGTCTTCTTCAACTGGCTGGGCTACGCCAACTCGGCCTTCAACCCCATCA,"Exon (Adrb1-201/Adrb1, exon 1 of 1)",19,56722199,56725150,2952,1,Adrb1-201,1216,Adrb1-201;Adrb1-202,Adrb1;Adrb1,0;-399,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,11554,ENSMUSG00000035283,conserved gene and region,19,56721990,56723878,1889,*,1889,218,0.710428798,0.916980082,0.115404976,2.37E-179,CpGisland,TRUE,U3,Pr-B
25907,cg20115384,-0.000022,0.0000177,-1.246825723,0.213402636,loss,ns,-0.0000681,0.00003,-2.269460137,0.023927075,neg,ns,-0.00618191,0.008790098,-0.703281084,0.482408439,neg,ns,0.316585103,0.000104627,0.000302291,0.346114088,0.729491761,pos,ns,0.237856609,Flrt3,Flrt3_Intron,2,140668457,140668506,140668505,140668506,50,-,TGCCCACTGGGGGGTGGTACACTCTACCAGAACACTGCTTTCTGAAGCCG,"Intron (Macrod2-207/Macrod2, intron 3 of 16)",2,140650914,140671450,20537,2,Flrt3-203,2944,Flrt3-203;Flrt3-202;Flrt3-201;Macrod2-207;Macrod2-205;Macrod2-206;Macrod2-209;Macrod2-202,Flrt3;Flrt3;Flrt3;Macrod2;Macrod2;Macrod2;Macrod2;Macrod2,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,71436,ENSMUSG00000051379,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22825,cg14258341,0.0000512,0.00000491,10.4178411,5.47E-22,gain,yes,-0.0000189,0.00000835,-2.269029348,0.023953576,neg,ns,0.002065592,0.002445408,0.844682002,0.398939818,pos,ns,0.399092615,-0.0000486,0.0000841,-0.578355567,0.563444001,neg,ns,0.116788845,Faah,Faah_Intron,4,115979569,115979618,115979617,115979618,50,+,TTGACTCCTTTCAGTTGATAATTCATGGCTTGCATATGCGCTTTAATGCG,"Intron (Faah-202/Faah, intron 13 of 14)",4,115967145,116017675,50531,2,Faah-202,38057,Faah-202,Faah,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,20,14073,ENSMUSG00000034171,mapped to different genes,4,115979607,115979774,168,*,168,25,0.785714286,0.969752944,0.148809524,3.68E-24,CpGisland,TRUE,U3,Pr-B
8255,cg20256450,-0.0000249,0.0000112,-2.225057347,0.026796787,loss,ns,0.0000432,0.000019,2.268728395,0.023972105,pos,ns,0.032402885,0.005572436,5.814850879,1.51E-08,pos,ns,7.821204714,-0.000860602,0.000191636,-4.490823699,0.00001,neg,ns,0.603266495,Ebf1,Ebf1_Intron,11,44904228,44904277,44904276,44904277,50,-,TCTCAGCAATTCCCCCAGCACGTGGCCTTTGATCAACTCTCATACAAACG,"Intron (Ebf1-203/Ebf1, intron 8 of 15)",11,44617317,45004995,387679,1,Ebf1-203,286911,Ebf1-203;Ebf1-202;Ebf1-201,Ebf1;Ebf1;Ebf1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,80,13591,ENSMUSG00000057098,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6024,cg10520898,0.000000374,0.00000088,0.425394292,0.670844419,gain,ns,-0.00000339,0.00000149,-2.268696638,0.023974061,neg,ns,-0.00108064,0.000437909,-2.467725864,0.014137222,neg,ns,1.849635923,0.0000209,0.0000151,1.387304371,0.166345502,pos,ns,0.986012886,Cxxc5,Cxxc5_threeUTR,18,35860727,35860776,35860775,35860776,50,+,TCTCCGTGCAATGTCACTGCTCGTGTGGTCTCCAGCAAGGGATTCGGGCG,3' UTR,18,35829788,35861688,31901,1,Cxxc5-201,30939,Cxxc5-202;Cxxc5-201;Cxxc5-206;Cxxc5-203;Cxxc5-204;Cxxc5-205,Cxxc5;Cxxc5;Cxxc5;Cxxc5;Cxxc5;Cxxc5,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,7,49,67393,ENSMUSG00000046668,conserved gene and region,18,35860501,35860796,296,*,296,26,0.628378378,0.896447292,0.087837838,1.36E-18,CpGisland,TRUE,U10,Tr-S
4253,cg00159753,0.000119138,0.0000266,4.486353571,0.0000102,gain,ns,-0.000102348,0.0000451,-2.268617376,0.023978944,neg,ns,0.038336269,0.013217039,2.900518627,0.003991835,pos,ns,2.398827458,-0.00351656,0.000454533,-7.736644861,1.45E-13,neg,yes,0.570162846,Anks1,Anks1_Exon,17,27986251,27986300,27986299,27986300,50,+,GACGGAGATGGGCAGTGCTTTGCATGAGGCTGCTTTGTTTGGCAAGACCG,"Exon (Anks1-203/Anks1, exon 6 of 25)",17,27909306,28062775,153470,1,Anks1-203,76945,Anks1-203;Anks1-202;Anks1-211;Anks1-201,Anks1;Anks1;Anks1;Anks1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,6,224650,ENSMUSG00000024219,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19955,cg23793099,0.00000929,0.00000226,4.114488665,0.0000498,gain,ns,-0.0000087,0.00000384,-2.268574109,0.023981609,neg,ns,-0.002075521,0.001123965,-1.846606197,0.065757233,neg,ns,1.182056471,0.0000473,0.0000387,1.22322568,0.222173496,pos,ns,0.937320033,Clpb,Clpb_Intron,7,101746667,101746716,101746715,101746716,50,-,GTGTTTGCCCCAGCCCCAGACAGCCAGTGGGAGGTGACGGATGACCTGCG,"Intron (Clpb-201/Clpb, intron 5 of 15)",7,101663633,101790168,126536,1,Clpb-201,83034,Clpb-201;Clpb-202;Clpb-211;Clpb-208;Clpb-207;Clpb-210,Clpb;Clpb;Clpb;Clpb;Clpb;Clpb,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,21,21,20480,ENSMUSG00000001829,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13045,cg03523284,0.00000377,0.0000029,1.297839971,0.195307172,gain,ns,-0.0000112,0.00000493,-2.26833254,0.023996497,neg,ns,-0.001794297,0.001445065,-1.241672263,0.21529614,neg,ns,0.666963756,0.00000377,0.0000497,0.075773013,0.939648563,pos,ns,0.870127284,Chd3,Chd3_Exon,11,69345479,69345528,69345527,69345528,50,+,GGTGAGGCTCCGTGCCCTTGCTGGCCAGCCGGCTGAGGATGCTGCGCTCG,Promoter (<=1kb),11,69343273,69346019,2747,2,Chd3-205,491,Chd3-205;Chd3-203;Chd3-202;Chd3-211;Chd3-201;Chd3-204;Chd3-208;Rnf227-201;Rnf227-203;Rnf227-202,Chd3;Chd3;Chd3;Chd3;Chd3;Chd3;Chd3;Rnf227;Rnf227;Rnf227,0;0;0;0;0;0;0;5018;4708;4670,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,22,26,216848,ENSMUSG00000018474,conserved gene but different region,11,69345353,69345644,292,*,292,17,0.609589041,0.656613757,0.058219178,1.94E-09,CpGisland,TRUE,U10,Tr-S
7402,cg25310556,0.0000188,0.00000448,4.196113892,0.0000355,gain,ns,-0.0000173,0.00000761,-2.268313053,0.023997698,neg,ns,0.002776283,0.002230168,1.244875674,0.214117705,pos,ns,0.66934742,0.0000605,0.0000767,0.789135458,0.430635955,pos,ns,0.937595667,R3hcc1l,R3hcc1l_Intron,19,42540848,42540897,42540848,42540849,50,-,CGTCACTTCGCATTAATTACTGAAGAGGTGTTTTTCCAGTGATTTACCTG,"Intron (R3hcc1l-201/R3hcc1l, intron 1 of 6)",19,42518759,42592343,73585,1,R3hcc1l-201,22089,R3hcc1l-201;R3hcc1l-202;R3hcc1l-203,R3hcc1l;R3hcc1l;R3hcc1l,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,13,52013,ENSMUSG00000025184,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16716,cg15513826,0.0000128,0.00000547,2.347490521,0.019529008,gain,ns,-0.0000211,0.00000929,-2.268207808,0.024004187,neg,ns,-0.005000321,0.002722566,-1.836620638,0.067223252,neg,ns,1.172480483,0.0000823,0.0000936,0.879206757,0.379970178,pos,ns,0.897732541,Adamtsl1,Adamtsl1_Exon,4,86243723,86243772,86243771,86243772,50,+,ATACAAGCAGATCATGCCTTATGACCTCTACCATCCCCTTCCTCGGTACG,"Exon (Adamtsl1-201/Adamtsl1, exon 10 of 13)",4,86053915,86428382,374468,1,Adamtsl1-203,189808,Adamtsl1-203;Adamtsl1-201;Adamtsl1-209;Adamtsl1-207,Adamtsl1;Adamtsl1;Adamtsl1;Adamtsl1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,10,77739,ENSMUSG00000066113,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10574,cg12508104,-0.00000197,0.00000227,-0.867155477,0.386527543,loss,ns,0.00000873,0.00000385,2.268138221,0.024008478,pos,ns,0.003840257,0.001128148,3.40403664,0.000751288,pos,ns,3.124193693,-0.000109915,0.0000388,-2.833086767,0.004912182,neg,ns,0.95647042,Fnip1,Fnip1_Exon,11,54490895,54490944,54490895,54490896,50,+,CGCAGCCAAACAACAAGTTTGGAAAATGGGGTATTTCCTAGATGGTAAGT,"Exon (Fnip1-201/Fnip1, exon 9 of 18)",11,54438199,54518235,80037,1,Fnip1-201,52696,Fnip1-201;Fnip1-202,Fnip1;Fnip1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,7,216742,ENSMUSG00000035992,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4758,cg01949917,0.0000209,0.0000175,1.192872272,0.2338316,gain,ns,0.0000674,0.0000297,2.267952138,0.024019956,pos,ns,0.028053897,0.008703954,3.223121061,0.001403026,pos,ns,2.852934407,-0.000862324,0.000299328,-2.880862586,0.004242377,neg,ns,0.125003991,Ier5l,Ier5l_Intergenic_downstream,2,30470882,30470931,30470882,30470883,50,+,CGCCAGCACACCACCAAGTGGCACCGAGCAGTGATAACAAACTCAACTTA,Downstream (<1kb),2,30471537,30474219,2683,2,Ier5l-201,3288,Ier5l-201,Ier5l,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,6,13,72500,ENSMUSG00000089762,conserved gene and region,2,30470658,30470883,226,*,226,15,0.646017699,0.664184953,0.066371681,3.62E-09,CpGisland,TRUE,U3,Pr-B
16029,cg10314759,0.0000279,0.0000122,2.291385842,0.022611557,gain,ns,-0.0000469,0.0000207,-2.267892613,0.024023629,neg,ns,0.026063374,0.006058354,4.302055406,0.0000227,pos,ns,4.643799291,-0.000914273,0.000208346,-4.388235967,0.0000157,neg,ns,0.202007468,Dysf,Dysf_Intron,6,84270619,84270668,84270619,84270620,50,+,CGGGAGGAACATCCTGAACAGCGTTAAGAATAATAAACACGGGCTGATAA,"Intron (Gm44127-201/Gm44127-201, intron 1 of 1)",6,84210484,84211041,558,1,Dysf-207,60135,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,15,26903,ENSMUSG00000033788,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23875,cg12435096,-0.0000105,0.00000676,-1.559062895,0.12000177,loss,ns,0.0000261,0.0000115,2.267593445,0.024042095,pos,ns,0.012075987,0.003366916,3.586660979,0.000389034,pos,ns,3.410012747,-0.000347635,0.000115788,-3.002341113,0.002897047,neg,ns,0.882263611,Mosmo,Mosmo_threeUTR,7,120731161,120731210,120731161,120731162,50,-,CGTTGCATTACTGCACCAAGAAGCCAATAGATCAAAACTTGTTTGCTAAA,3' UTR,7,120677631,120734854,57224,1,Mosmo-201,53530,Mosmo-202;Mosmo-205;Mosmo-201;Mosmo-207;Mosmo-204;Mosmo-203;Mosmo-208;Mosmo-206,Mosmo;Mosmo;Mosmo;Mosmo;Mosmo;Mosmo;Mosmo;Mosmo,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,6,233812,ENSMUSG00000046096,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10939,cg17011109,-0.00000564,0.00000185,-3.038791858,0.002577477,loss,ns,0.00000714,0.00000315,2.267396463,0.024054261,pos,ns,0.001024436,0.000922935,1.109977105,0.267869151,pos,ns,0.572077299,-0.000039,0.0000317,-1.229103522,0.219965134,neg,ns,0.956329475,Tcf7l2,Tcf7l2_Intron,19,55894237,55894286,55894285,55894286,50,+,TCTCTTGGGAGACACCTTAAGATGATGATATTGTGGGTTTTTTCCCCCCG,"Intron (Tcf7l2-213/Tcf7l2, intron 4 of 13)",19,55741820,55933229,191410,1,Tcf7l2-213,152417,Tcf7l2-213;Tcf7l2-201;Tcf7l2-208;Tcf7l2-211;Tcf7l2-212;Tcf7l2-206;Tcf7l2-204;Tcf7l2-205;Tcf7l2-222;Tcf7l2-215;Tcf7l2-214;Tcf7l2-207;Tcf7l2-202;Tcf7l2-209;Tcf7l2-210;Tcf7l2-217;Tcf7l2-220;Tcf7l2-218;Tcf7l2-203;Tcf7l2-216;Tcf7l2-219;Tcf7l2-221,Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,55,88,21416,ENSMUSG00000024985,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7522,cg20864279,-0.000000172,0.00000315,-0.054768274,0.956358356,loss,ns,-0.0000121,0.00000535,-2.267389108,0.024054715,neg,ns,-0.000849788,0.001567249,-0.542216241,0.588059093,neg,ns,0.23057903,-0.0000266,0.0000539,-0.493692748,0.621872778,neg,ns,0.871154922,Arhgef12,Arhgef12_Exon,9,42972030,42972079,42972078,42972079,50,+,TTAACTGCTCCATCACCTTCTGATGGATTCTCATCACTATGTGCTTCACG,"Exon (Arhgef12-202/Arhgef12, exon 38 of 41)",9,42963842,43105987,142146,2,Arhgef12-202,133908,Arhgef12-202;Arhgef12-201,Arhgef12;Arhgef12,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,5,69632,ENSMUSG00000059495,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8009,cg21118936,-0.000033,0.0000119,-2.767787201,0.005983211,loss,ns,0.0000459,0.0000202,2.267322808,0.024058811,pos,ns,0.00073674,0.005928873,0.124263059,0.90118753,pos,ns,0.045184826,-0.0000232,0.000203893,-0.113682971,0.9095627,neg,ns,0.245821605,Pax2,Pax2_Intergenic_upstream,19,44681913,44681962,44681913,44681914,50,-,CGCTAATGTAAGGTTATTGTAATTGATATGAAGGTAATTGATAATGTGTT,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-74132,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
15368,cg11493054,0.0000254,0.00000352,7.205040749,4.44E-12,gain,yes,-0.0000136,0.00000599,-2.267303366,0.024060012,neg,ns,-0.000940381,0.00175441,-0.536009609,0.592336289,neg,ns,0.22743166,0.0000329,0.0000603,0.544715711,0.586340687,pos,ns,0.06682299,Galnt16,Galnt16_Exon,12,80519183,80519232,80519183,80519184,50,-,CGCCAATGCCATCGCCATCCTGACCGTAGCCTGGATCCTGGGCACTTTCT,Promoter (<=1kb),12,80518277,80603892,85616,1,Galnt16-206,906,Galnt16-206;Galnt16-204;Galnt16-201,Galnt16;Galnt16;Galnt16,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,7,108760,ENSMUSG00000021130,conserved gene and region,12,80519068,80519208,141,*,141,18,0.716312057,1.017642342,0.127659575,4.37E-16,CpGisland,TRUE,U3,Pr-B
518,cg22336337,0.0000208,0.0000093,2.240326661,0.025777931,gain,ns,0.0000358,0.0000158,2.26721317,0.024065586,pos,ns,0.010351172,0.004627027,2.237110854,0.025989665,pos,ns,1.585199317,-0.000192711,0.000159123,-1.211080886,0.22678685,neg,ns,0.266486597,St18,St18_fiveUTR,1,6734940,6734989,6734940,6734941,50,-,CGTGAGAGGCAGAACAAAGGCTAGGAGGCACCGGTAAGTCAGTCTGGCAA,5' UTR,1,6487231,6860934,373704,1,St18-208,247709,St18-208;St18-204;St18-201;St18-206;St18-203;St18-210;St18-212;St18-207;St18-213,St18;St18;St18;St18;St18;St18;St18;St18;St18,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,20,240690,ENSMUSG00000033740,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21847,cg21917706,0.0000175,0.00000841,2.080315575,0.038317675,gain,ns,0.0000324,0.0000143,2.266772447,0.024092835,pos,ns,0.007461494,0.004185334,1.782771423,0.07560199,pos,ns,1.121466773,-0.000209798,0.000143933,-1.457604744,0.145961782,neg,ns,0.777462901,Gm1943,Gm1943_Exon,8,109251387,109251436,109251435,109251436,50,-,TCCTGGGGGTCTGGATAATCTCCCTTGGCTTTACCGCACTGTCTGGCCCG,"Exon (D030068K23Rik-202/D030068K23Rik-202, exon 10 of 10)",8,109340691,109340864,174,2,Gm1943-201,89477,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,28,384864,NA,mapped to different genes,8,109251360,109251796,437,*,437,24,0.544622426,0.749571184,0.054919909,1.62E-12,CpGisland,TRUE,U15,NS
7021,cg25947399,-0.00000546,0.00000257,-2.119459909,0.034846202,loss,ns,0.00000992,0.00000437,2.266738145,0.024094957,pos,ns,0.002804105,0.001281545,2.18806671,0.029410974,pos,ns,1.531490588,-0.0000676,0.0000441,-1.53341527,0.126193462,neg,ns,0.944054896,Zfpm2,Zfpm2_Intron,15,40658365,40658414,40658365,40658366,50,+,CGGAGAAGATATACCATCAGAAACCCGATTATTACCATTAAAATTCCAGC,"Intron (Zfpm2-202/Zfpm2, intron 1 of 3)",15,40655035,40872723,217689,1,Zfpm2-202,3330,Zfpm2-202;Zfpm2-201;Zfpm2-204,Zfpm2;Zfpm2;Zfpm2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,41,22762,ENSMUSG00000022306,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14601,cg03833239,-0.00000142,0.0000025,-0.567996172,0.570448728,loss,ns,0.00000963,0.00000425,2.265892571,0.024147318,pos,ns,0.001088572,0.001245541,0.873974981,0.382808419,pos,ns,0.41701852,0.00000324,0.0000428,0.075705412,0.939702302,pos,ns,0.93715278,Mctp1,Mctp1_Intron,13,76803876,76803925,76803876,76803877,50,+,CGATGGGCTTGAAATGTTATTTAGAGCATTGATAAAAGGTGAGCGGTTCT,"Intron (Mctp1-204/Mctp1, intron 9 of 20)",13,76384535,77031810,647276,1,Mctp1-204,419341,Mctp1-204;Mctp1-201;Mctp1-206,Mctp1;Mctp1;Mctp1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,20,78771,ENSMUSG00000021596,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17494,cg18704635,0.00000069,0.00000325,0.211910709,0.832315952,gain,ns,0.0000125,0.00000553,2.265774314,0.024154648,pos,ns,0.001940282,0.001619536,1.19804822,0.231813402,pos,ns,0.634861459,-0.00000674,0.0000557,-0.121014171,0.90375821,neg,ns,0.926924997,Chtop,Chtop_Exon,3,90503230,90503279,90503230,90503231,50,-,CGGCCTAACCGTGCCTGGATGTTACTCTTACCCAGGCGCTGCTTTAAGCT,"Exon (Chtop-205/Chtop, exon 3 of 4)",3,90498956,90509450,10495,2,Chtop-205,6171,Chtop-205;Chtop-201;Chtop-206;Chtop-203;Chtop-202;Chtop-207;Chtop-204;Chtop-209;Chtop-208,Chtop;Chtop;Chtop;Chtop;Chtop;Chtop;Chtop;Chtop;Chtop,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,10,66511,ENSMUSG00000001017,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23234,cg07774376,-0.00000308,0.00000374,-0.824213262,0.410452083,loss,ns,-0.0000144,0.00000636,-2.265686047,0.024160121,neg,ns,-0.003673583,0.001862213,-1.97269734,0.04941835,neg,ns,1.306111756,0.000110355,0.000064,1.723179025,0.085853315,pos,ns,0.897505539,Eri3,Eri3_Intron,4,117576365,117576414,117576413,117576414,50,-,AAAGATGACCCGAAGCACAAAGCAACTGACAAACAAGTCCGGACAAATCG,"Intron (Eri3-201/Eri3, intron 3 of 8)",4,117550365,117674297,123933,1,Eri3-201,26000,Eri3-201;Eri3-205;Eri3-206,Eri3;Eri3;Eri3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,82,97,140546,ENSMUSG00000033423,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2063,cg26127669,0.0000371,0.00000371,9.980962451,1.59E-20,gain,yes,-0.0000143,0.00000631,-2.265360792,0.024180298,neg,ns,0.005373986,0.001848132,2.907793899,0.003902578,pos,ns,2.408648428,-0.000123535,0.0000636,-1.943685903,0.052838031,neg,ns,0.067805302,Gm38154,Gm38154_Exon,3,17793889,17793938,17793937,17793938,50,+,TTTGTTTGGCTGGAGCGAGCCATTAATCCCTAATTCTGGATCAGCAAGCG,"Exon (Mir124-2hg-202/Mir124-2hg-202, exon 1 of 2)",3,17670688,17671027,340,1,Gm38154-201,123201,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,15,,NA,mapped to different genes,3,17793904,17794069,166,*,166,12,0.590361446,0.928671329,0.072289157,7.76E-08,CpGisland,TRUE,U13,Hc-P
27267,cg03677729,-0.0000136,0.00000862,-1.582928446,0.114457413,loss,ns,0.0000332,0.0000146,2.265235987,0.024188044,pos,ns,0.014716554,0.004291124,3.429533436,0.000686474,pos,ns,3.163375871,-0.000450516,0.000147571,-3.052868526,0.002462985,neg,ns,0.85816724,Prrc2c,Prrc2c_Exon,1,162674185,162674234,162674185,162674186,50,+,CGACTTCACTTGATCACTAAGTTCTGATAGCTCCTACCACATTCTGAGCT,"Exon (Gm27616-201/Gm27616-201, exon 1 of 1)",1,162670725,162740525,69801,2,Prrc2c-202,66291,Prrc2c-202;Prrc2c-210;Prrc2c-212;Prrc2c-206;Prrc2c-209;Prrc2c-201,Prrc2c;Prrc2c;Prrc2c;Prrc2c;Prrc2c;Prrc2c,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,7,226562,ENSMUSG00000040225,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15019,cg09909916,-0.0000212,0.0000041,-5.15312322,0.000000457,loss,yes,-0.0000158,0.00000697,-2.265225455,0.024188697,neg,ns,-0.005448888,0.002042988,-2.667117046,0.008052273,neg,ns,2.094081507,-0.000118993,0.0000703,-1.693655205,0.091335293,neg,ns,0.890752037,Poldip2,Poldip2_Exon,11,78515123,78515172,78515123,78515124,50,+,CGTCCTGTTTCCCTGGCAGGCCAGACTGTATGACCGGGATGTGGCTTCTG,"Exon (Poldip2-201/Poldip2, exon 3 of 11)",11,78512193,78522736,10544,1,Poldip2-201,2930,Poldip2-201;Poldip2-203;Poldip2-202;Poldip2-204;Poldip2-206;Poldip2-205;Tmem199-201;Tmem199-203;Tmem199-204,Poldip2;Poldip2;Poldip2;Poldip2;Poldip2;Poldip2;Tmem199;Tmem199;Tmem199,0;2735;0;-1057;-1647;-3159;-2951;-3078;-3040,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,67811,ENSMUSG00000001100,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12391,cg16286672,-0.0000275,0.0000158,-1.739242499,0.082984747,loss,ns,-0.0000608,0.0000268,-2.265225057,0.024188722,neg,ns,0.020138882,0.007857133,2.5631336,0.010844943,pos,ns,1.964772726,-0.000442403,0.000270206,-1.637278974,0.102586859,neg,ns,0.339861226,Fign,Fign_Intron,2,64094634,64094683,64094634,64094635,50,+,CGGACCTAACTTTTAGAGGATCAATGTGACAAGGCAGTCCCTGATAGATG,"Intron (Fign-203/Fign, intron 2 of 2)",2,63971507,64098012,126506,2,Fign-203,3329,Fign-203;Fign-201;Fign-202;Fign-204,Fign;Fign;Fign;Fign,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,84,60344,ENSMUSG00000075324,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
2609,cg05203725,0.0000108,0.00000173,6.250542532,1.35E-09,gain,yes,-0.00000665,0.00000293,-2.265205054,0.024189964,neg,ns,0.00096906,0.000859485,1.127489333,0.260407564,pos,ns,0.584346405,0.00000163,0.0000296,0.0553086,0.955928239,pos,ns,0.953307293,Aftph,Aftph_threeUTR,11,20696800,20696849,20696848,20696849,50,-,ATCAAGGTTCAGAAGAGTGGAACCTCCACTAGCTTGAAATTCAGTGACCG,3' UTR,11,20685084,20727607,42524,2,Aftph-205,30758,Aftph-205;Aftph-201;Aftph-208;Aftph-209;Aftph-203;Aftph-207;Aftph-206,Aftph;Aftph;Aftph;Aftph;Aftph;Aftph;Aftph,0;0;0;0;-3998;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,4,216549,ENSMUSG00000049659,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19625,cg19898504,-0.00000322,0.00000861,-0.37423701,0.708483839,loss,ns,-0.0000331,0.0000146,-2.265174355,0.02419187,neg,ns,-0.002210231,0.004285587,-0.515735933,0.606406471,neg,ns,0.217236173,-0.000232221,0.000147381,-1.57564944,0.116126549,neg,ns,0.80639637,Gm8641,Gm8641_Intergenic_upstream,9,100167532,100167581,100167580,100167581,50,-,TCGGTTAATAAGAAAAGCTGTCAGCAACAGAAAATGGCTGACATAATCCG,Distal Intergenic,9,99946564,99947389,826,2,Gm8641-201,-220192,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,15,667456,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24804,cg20320608,0.00000166,0.00000367,0.451443797,0.651985379,gain,ns,-0.0000141,0.00000624,-2.265137305,0.02419417,neg,ns,-0.006021729,0.001828192,-3.293816352,0.001102759,neg,ns,2.957519281,0.000178189,0.0000629,2.834187063,0.004895733,pos,ns,0.819260489,Csmd2,Csmd2_Exon,4,128523498,128523547,128523498,128523499,50,-,CGCCTGATCGGCATGTCTGTGCGCATCTGCCAGCAGGATCATCACTGGTC,"Exon (Csmd2-205/Csmd2, exon 53 of 71)",4,127988044,128567656,579613,1,Csmd2-205,535454,Csmd2-205,Csmd2,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,9,329942,ENSMUSG00000028804,conserved gene and region,4,128523431,128523617,187,*,187,13,0.598930481,0.775191327,0.069518717,0.00000003,CpGisland,TRUE,U15,NS
18092,cg22713443,0.0000124,0.00000324,3.831297114,0.00015431,gain,ns,-0.0000125,0.0000055,-2.265112363,0.024195718,neg,ns,0.0000828,0.001611824,0.051369375,0.959064272,pos,ns,0.018152288,0.0000387,0.0000554,0.69772732,0.48587072,pos,ns,0.910419008,Magi1,Magi1_fiveUTR,6,93792495,93792544,93792495,93792496,50,+,CGTGATCACTTTCCCACTGACTGGCTGGCTAGGAGGCTTGGGTGTCCCAT,Promoter (<=1kb),6,93785303,93792539,7237,2,Magi1-210,0,Magi1-201;Magi1-202;Magi1-208;Magi1-203;Magi1-206;Magi1-209;Magi1-205;Magi1-211;Magi1-210;Magi1-207,Magi1;Magi1;Magi1;Magi1;Magi1;Magi1;Magi1;Magi1;Magi1;Magi1,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,8,18,14924,ENSMUSG00000045095,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6175,cg22208091,-0.0000726,0.0000107,-6.770878425,6.42E-11,loss,yes,0.0000413,0.0000182,2.265016044,0.024201699,pos,ns,-0.005949443,0.005336293,-1.114901701,0.26575612,neg,ns,0.575516726,0.000245164,0.000183515,1.33593907,0.182549082,pos,ns,0.858243663,Tenm2,Tenm2_Intron,11,36223136,36223185,36223136,36223137,50,+,CGATAGCTTCTGATTTGTAATTACCAGGTGAAGGGAGCCAAGGAATTAGC,"Intron (Tenm2-202/Tenm2, intron 7 of 30)",11,36006656,37235882,1229227,2,Tenm2-202,1012697,Tenm2-202;Tenm2-208;Tenm2-201;Tenm2-204;Tenm2-205;Tenm2-206,Tenm2;Tenm2;Tenm2;Tenm2;Tenm2;Tenm2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,47,84,23964,ENSMUSG00000049336,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25151,cg00585359,-0.0000117,0.00000222,-5.281867015,0.000000241,loss,yes,-0.00000854,0.00000377,-2.264371079,0.024241783,neg,ns,-0.002317523,0.001104427,-2.098394817,0.036679238,neg,ns,1.435579696,-0.0000141,0.000038,-0.371783363,0.710308146,neg,ns,0.9563753,Pik3c2b,Pik3c2b_Exon,1,133099223,133099272,133099223,133099224,50,-,CGCTTCCATGATTTTGTTGACCTTTGCTGCCAAGCCTACAACCTCATTCG,"Exon (Pik3c2b-201/Pik3c2b, exon 25 of 33)",1,133046012,133108687,62676,1,Pik3c2b-201,53211,Pik3c2b-201,Pik3c2b,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,240752,ENSMUSG00000026447,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27400,cg23589509,-0.0000206,0.000011,-1.867991811,0.062706506,loss,ns,0.0000423,0.0000187,2.263818007,0.024276201,pos,ns,-0.005277163,0.005480578,-0.962884287,0.336356074,neg,ns,0.473200725,0.0000787,0.000188477,0.41751282,0.676592363,pos,ns,0.684059352,Egfl6,Egfl6_Intron,X,166576284,166576333,166576332,166576333,50,-,ATGCATTATACAGCTTGCTGTCTACATTGATCAAATTAATCAGAAAATCG,"Intron (Egfl6-201/Egfl6, intron 1 of 11)",20,166523007,166585720,62714,2,Egfl6-201,9387,Egfl6-201,Egfl6,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,54156,ENSMUSG00000000402,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18662,cg01786675,-0.00000416,0.00000179,-2.328811035,0.02051166,loss,ns,-0.00000687,0.00000303,-2.263815839,0.024276336,neg,ns,0.000272005,0.00088912,0.305926627,0.759865854,pos,ns,0.119263071,-0.0000632,0.0000306,-2.067629356,0.039504348,neg,ns,0.957857144,6330549D23Rik,6330549D23Rik_Exon,3,96623829,96623878,96623829,96623830,50,+,CGCTTCCACAAGGAGAAGAAAGATATTCTTGTGCTGGCTGCTGGGCAGTT,"Exon (Lix1l-201/Lix1l, exon 6 of 6)",3,96606659,96629820,23162,2,6330549D23Rik-203,5942,6330549D23Rik-203;6330549D23Rik-201;Lix1l-201;Lix1l-202,6330549D23Rik;6330549D23Rik;Lix1l;Lix1l,0;0;0;5528,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,229613,ENSMUSG00000045327,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14058,cg25807001,0.0000684,0.0000116,5.899195392,9.56E-09,gain,yes,-0.0000446,0.0000197,-2.262990486,0.024327778,neg,ns,0.027018143,0.005774708,4.678702641,0.00000432,pos,ns,5.364675197,-0.000832479,0.000198592,-4.191912468,0.0000361,neg,ns,0.484270602,Cnot9,Cnot9_Exon,1,74528773,74528822,74528821,74528822,50,+,ACGCTGGCTTGCACAACTGGTGAAGAACCTGCAAGAGGGCCAGGTCACCG,"Exon (Cnot9-201/Cnot9, exon 8 of 8)",1,74506058,74530842,24785,1,Cnot9-201,22715,Cnot9-201;Cnot9-202;Cnot9-203;Usp37-205,Cnot9;Cnot9;Cnot9;Usp37,0;22713;5246;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,58184,ENSMUSG00000026174,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26360,cg00193075,-0.00000493,0.00000336,-1.467258838,0.14331943,loss,ns,0.0000129,0.00000571,2.262720503,0.024344626,pos,ns,0.005317893,0.001671854,3.180836221,0.001617156,pos,ns,2.791248156,-0.000154632,0.0000575,-2.689486246,0.00754363,neg,ns,0.929380041,Xrn2,Xrn2_Exon,2,147026521,147026570,147026569,147026570,50,-,GAATTCATGGACAATCTTGCTAAATGCCTTCGCTATTACATAGCTGATCG,"Exon (Xrn2-201/Xrn2, exon 6 of 30)",2,147012996,147078000,65005,1,Xrn2-201,13525,Xrn2-201;Xrn2-204,Xrn2;Xrn2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,24128,ENSMUSG00000027433,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11707,cg16940931,0.0000715,0.00000939,7.620534877,3.10E-13,gain,yes,0.0000361,0.0000159,2.262656648,0.024348612,pos,ns,0.011690397,0.004672505,2.501954964,0.012865986,pos,ns,1.890556924,-0.0000785,0.000160687,-0.488662293,0.625426311,neg,ns,0.644098066,Gas1,Gas1_Intergenic_downstream,13,60171080,60171129,60171128,60171129,50,-,ATTATGTGCTTAACATTTCCATAACAAAAGTGCCACTCGACTTCTCCCCG,Distal Intergenic,13,60175787,60176941,1155,2,Gas1-202,5861,Gas1-201;Gas1-202,Gas1;Gas1,6236;5812,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,10,14451,ENSMUSG00000052957,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
17637,cg16847658,-0.00000983,0.00000292,-3.370243176,0.000846011,loss,ns,0.0000112,0.00000495,2.262080697,0.024384593,pos,ns,0.002000624,0.001451459,1.378353936,0.169087978,pos,ns,0.771887269,-0.000149853,0.0000499,-3.002128101,0.002899017,neg,ns,0.937098604,Elavl2,Elavl2_Intron,4,91313249,91313298,91313249,91313250,50,+,CGCTTGAGGCAGACACATACCTTTATGGGAAGTTATAAATAAGTTGCTCA,"Intron (Elavl2-204/Elavl2, intron 1 of 5)",4,91250763,91372034,121272,2,Elavl2-204,58736,Elavl2-204;Elavl2-201;Elavl2-207;Elavl2-208;Elavl2-202;Elavl2-209;Elavl2-206;Elavl2-203;Elavl2-205;Elavl2-215;Elavl2-216;Elavl2-212;Elavl2-214,Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,31,15569,ENSMUSG00000008489,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4230,cg06758827,-0.000000772,0.00000497,-0.15515953,0.876796529,loss,ns,-0.0000191,0.00000845,-2.26204879,0.024386587,neg,ns,-0.005718697,0.002475704,-2.309927692,0.021548811,neg,ns,1.666576688,-0.0000734,0.0000851,-0.861836138,0.389443856,neg,ns,0.859781839,Trio,Trio_threeUTR,15,27744053,27744102,27744101,27744102,50,-,CTCGGAACACCAGAAACATGTTCTGCTGGTTGCTGGCCAGAATTTGAACG,3' UTR,15,27730651,28025848,295198,2,Trio-201,281746,Trio-212;Trio-201;Trio-208;Trio-206;Trio-214;Trio-211;Trio-205,Trio;Trio;Trio;Trio;Trio;Trio;Trio,-1730;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,8,11,223435,ENSMUSG00000022263,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12734,cg24252591,-0.00000395,0.00000486,-0.813981804,0.416280171,loss,ns,0.0000187,0.00000825,2.262017257,0.024388559,pos,ns,0.004938532,0.002417677,2.042676593,0.041930079,pos,ns,1.377474316,-0.000168525,0.0000831,-2.026912253,0.043526972,neg,ns,0.910604104,Rsrc1,Rsrc1_Intron,3,67009801,67009850,67009849,67009850,50,+,TGCTTAATAACATTTTGCCTTCTTGCAATCTTTTTAAAGACAATAATTCG,"Intron (Rsrc1-206/Rsrc1, intron 3 of 9)",3,66981390,67356559,375170,1,Rsrc1-206,28411,Rsrc1-206;Rsrc1-203;Rsrc1-208;Rsrc1-202;Rsrc1-201;Rsrc1-209;Rsrc1-205,Rsrc1;Rsrc1;Rsrc1;Rsrc1;Rsrc1;Rsrc1;Rsrc1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,37,66880,ENSMUSG00000034544,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27201,cg17213363,-0.00000699,0.00000361,-1.93534474,0.053857256,loss,ns,0.0000139,0.00000614,2.261736997,0.024406086,pos,ns,0.002317015,0.001798758,1.28811946,0.198665024,pos,ns,0.701878585,-0.00000416,0.0000619,-0.067313858,0.946375239,neg,ns,0.934925479,Adgrg2,Adgrg2_Exon,X,160491457,160491506,160491457,160491458,50,-,CGGTATCTTTGTTGTGGAAAGTTACGGCTGGCTGAAAATTCTGGTAAAGA,"Exon (Adgrg2-207/Adgrg2, exon 26 of 28)",20,160390690,160498070,107381,1,Adgrg2-207,100767,Adgrg2-207;Adgrg2-203;Adgrg2-204;Adgrg2-202;Adgrg2-205;Adgrg2-206;Adgrg2-201,Adgrg2;Adgrg2;Adgrg2;Adgrg2;Adgrg2;Adgrg2;Adgrg2,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,237175,ENSMUSG00000031298,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3938,cg16906339,-0.00000539,0.00000456,-1.181210924,0.238424352,loss,ns,0.0000175,0.00000776,2.261145437,0.024443119,pos,ns,0.005768581,0.002272041,2.538942246,0.011607503,pos,ns,1.93526118,-0.00012996,0.0000781,-1.663268812,0.097269231,neg,ns,0.912187328,Adgrb3,Adgrb3_Promoter,1,25828550,25828599,25828598,25828599,50,+,TTGCAGGCAATGCAGGTCTGCGCAGTGTTCTTCAGGATAGAGTGTAGGCG,Promoter (<=1kb),1,25067550,25829511,761962,2,Adgrb3-205,912,Adgrb3-206;Adgrb3-205;Adgrb3-207;Adgrb3-201;Adgrb3-210,Adgrb3;Adgrb3;Adgrb3;Adgrb3;Adgrb3,0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,2,25,210933,ENSMUSG00000033569,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3084,cg10176312,0.00000106,0.00000146,0.725645527,0.468603551,gain,ns,0.0000056,0.00000248,2.261140753,0.024443412,pos,ns,0.001353742,0.00072567,1.865506733,0.06305486,pos,ns,1.200281437,-0.0000327,0.000025,-1.311821406,0.190551027,neg,ns,0.959933022,Bbs9,Bbs9_Intron,9,22640386,22640435,22640434,22640435,50,+,CAAGTTTCCATCATAATAAATCCTGTTAATTGAGAAAATTTTTCCATCCG,"Intron (Bbs9-201/Bbs9, intron 12 of 21)",9,22475715,22888280,412566,1,Bbs9-201,164671,Bbs9-201;Bbs9-211;Bbs9-210;Bbs9-209;Bbs9-206;Bbs9-203,Bbs9;Bbs9;Bbs9;Bbs9;Bbs9;Bbs9,0;0;0;0;0;-3406,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,319845,ENSMUSG00000035919,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16636,cg10588135,-0.0000384,0.0000187,-2.050456509,0.04116053,loss,ns,-0.000072,0.0000318,-2.260832506,0.024462728,neg,ns,-0.010999168,0.009324415,-1.179609435,0.239060051,neg,ns,0.621492992,-0.000436642,0.000320666,-1.361672986,0.174289872,neg,ns,0.444714704,Bcas3,Bcas3_Intron,11,85713771,85713820,85713819,85713820,50,-,ACATAACCCAGGGCTCCAGAGGGGCCGGAGGCAGGCATTCCAGGGCCACG,"Intron (Bcas3-205/Bcas3, intron 24 of 27)",11,85353167,85826058,472892,1,Bcas3-205,360604,Bcas3-205;Bcas3-206;Bcas3-201;Bcas3-202;Bcas3-216;Bcas3-212;Bcas3-203;Bcas3-207,Bcas3;Bcas3;Bcas3;Bcas3;Bcas3;Bcas3;Bcas3;Bcas3,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,24,192197,ENSMUSG00000059439,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
9518,cg21834164,-0.00000588,0.00000316,-1.858591285,0.064032722,loss,ns,0.0000121,0.00000537,2.260751478,0.024467808,pos,ns,0.003987678,0.001573459,2.534338244,0.011757931,pos,ns,1.929669108,-0.00011433,0.0000541,-2.112871304,0.03541089,neg,ns,0.933468383,Ap5m1,Ap5m1_threeUTR,14,49088639,49088688,49088639,49088640,50,-,CGATTCCAGAAGCTTAATCGTGATTGACATGTTCTTATTCTAAGCTATAA,3' UTR,14,49066495,49090879,24385,1,Ap5m1-201,22144,Ap5m1-201;Ap5m1-204;Ap5m1-206;Ap5m1-203;Ap5m1-202,Ap5m1;Ap5m1;Ap5m1;Ap5m1;Ap5m1,0;22108;22097;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,7,7,74385,ENSMUSG00000036291,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10667,cg20383990,-0.0000469,0.0000103,-4.551710215,0.00000765,loss,ns,-0.0000396,0.0000175,-2.260665689,0.024473187,neg,ns,-0.006352638,0.005126632,-1.239144662,0.216229274,neg,ns,0.665085509,-0.000279301,0.000176304,-1.584198549,0.114168121,neg,ns,0.667153412,Slc22a17,Slc22a17_threeUTR,14,54908874,54908923,54908874,54908875,50,-,CGCCAATCCTTAGAGACAAGGGCCAGGCCCAGGAACAGGAAGTGCCCTCC,3' UTR,14,54906304,54913103,6800,2,Slc22a17-209,4180,Slc22a17-209;Slc22a17-201;Slc22a17-212;Slc22a17-205;Slc22a17-206;Slc22a17-207;Slc22a17-203;Slc22a17-208;Slc22a17-204;Slc22a17-210;Slc22a17-211;Slc22a17-202,Slc22a17;Slc22a17;Slc22a17;Slc22a17;Slc22a17;Slc22a17;Slc22a17;Slc22a17;Slc22a17;Slc22a17;Slc22a17;Slc22a17,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,2,59049,ENSMUSG00000022199,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22037,cg08682143,-0.0000552,0.0000095,-5.809937313,1.55E-08,loss,yes,0.0000365,0.0000161,2.260499546,0.024483608,pos,ns,-0.011555407,0.004728506,-2.443775375,0.015091762,neg,ns,1.821260057,0.000265901,0.000162613,1.63517946,0.103026381,pos,ns,0.521268589,Elavl4,Elavl4_fiveUTR,4,110286590,110286639,110286638,110286639,50,+,AGAAGGAAGCAACAACTCAACACGCCAGGCACTGCTACACATACAAGCCG,Promoter (<=1kb),4,110213217,110286616,73400,2,Elavl4-208,0,Elavl4-204;Elavl4-201;Elavl4-203;Elavl4-202;Elavl4-205;Elavl4-206;Elavl4-207;Elavl4-208;Elavl4-212;Elavl4-209,Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,7,36,15572,ENSMUSG00000028546,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6255,cg01931319,0.0000476,0.000007,6.802800213,5.30E-11,gain,yes,-0.0000269,0.0000119,-2.260140892,0.024506116,neg,ns,0.026463444,0.003485931,7.591499394,3.74E-13,pos,yes,12.42669572,-0.000749032,0.000119881,-6.248132492,1.37E-09,neg,yes,0.908382661,Ankhd1,Ankhd1_Exon,18,36625235,36625284,36625235,36625236,50,+,CGCTTACCGACACTCTTGATGACCTGATAGCAGGTGGGTTAAGAAATATA,"Exon (Ankhd1-201/Ankhd1, exon 15 of 34)",18,36560611,36658908,98298,1,Ankhd1-201,64624,Ankhd1-201;Ankhd1-212;Ankhd1-209;Ankhd1-207;Ankhd1-206;Ankhd1-213,Ankhd1;Ankhd1;Ankhd1;Ankhd1;Ankhd1;Ankhd1,0;0;24435;0;0;10923,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,6,108857,ENSMUSG00000024483,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12783,cg04401184,-0.00000117,0.000000901,-1.294789946,0.19635624,loss,ns,0.00000346,0.00000153,2.259983034,0.024516029,pos,ns,0.001042488,0.000448654,2.323590296,0.020793936,pos,ns,1.682063297,-0.0000215,0.0000154,-1.39636447,0.163603789,neg,ns,0.023427993,Jmjd1c,Jmjd1c_fiveUTR,10,67185875,67185924,67185875,67185876,50,-,CGACCTCGAGAGAAATTATCCTGACCCAGATCGGAGGATGCAGTAGTGCT,5' UTR,10,67096125,67191748,95624,1,Jmjd1c-209,89750,Jmjd1c-209;Jmjd1c-210;Jmjd1c-211;Jmjd1c-201;Jmjd1c-212;Jmjd1c-205;Jmjd1c-206;Jmjd1c-208,Jmjd1c;Jmjd1c;Jmjd1c;Jmjd1c;Jmjd1c;Jmjd1c;Jmjd1c;Jmjd1c,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,9,108829,ENSMUSG00000037876,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
16743,cg02553697,-0.0000056,0.00000192,-2.917449143,0.003786935,loss,ns,0.00000736,0.00000326,2.259904834,0.02452094,pos,ns,0.000460016,0.000954505,0.481941704,0.630187429,pos,ns,0.200530264,0.00000586,0.0000328,0.178668202,0.858314946,pos,ns,0.957537947,Lrba,Lrba_Intron,3,86379109,86379158,86379109,86379110,50,-,CGGATACTCAACAGTCCACTATCGGAGAGGGCTGTCAGATAAATCTTGTG,"Intron (Lrba-202/Lrba, intron 34 of 50)",3,86224680,86746712,522033,1,Lrba-202,154429,Lrba-202;Lrba-204;Lrba-201;Lrba-208,Lrba;Lrba;Lrba;Lrba,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,45,80877,ENSMUSG00000028080,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2033,cg00776597,-0.0000717,0.000025,-2.862052359,0.004495475,loss,ns,0.0000962,0.0000426,2.2594655,0.024548551,pos,ns,0.09483115,0.012467123,7.60649799,3.40E-13,pos,yes,12.46911702,-0.002009496,0.000428743,-4.68694284,0.00000416,neg,ns,0.358740112,Pcsk5,Pcsk5_threeUTR,19,17560416,17560465,17560416,17560417,50,-,CGTCAAATTTTGGCATCAAATGCTTTGGTCATACAATACTGTCTCTGTGG,3' UTR,19,17432319,17837632,405314,2,Pcsk5-201,277167,Pcsk5-201;Pcsk5-202;Pcsk5-204,Pcsk5;Pcsk5;Pcsk5,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,7,18552,ENSMUSG00000024713,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17634,cg02231183,-0.00000719,0.00000497,-1.444540086,0.149597076,loss,ns,0.0000191,0.00000845,2.259215413,0.02456428,pos,ns,0.003503713,0.002475982,1.415080319,0.15804868,pos,ns,0.801209128,-0.000170038,0.0000851,-1.996955509,0.046703991,neg,ns,0.890038879,Elavl2,Elavl2_fiveUTR,4,91311597,91311646,91311597,91311598,50,-,CGAACCACTTCTAAGCAGAGAAGCCACATCACACAGTCTGACTGCCATGT,5' UTR,4,91250763,91372034,121272,2,Elavl2-204,60388,Elavl2-204;Elavl2-201;Elavl2-207;Elavl2-208;Elavl2-202;Elavl2-209;Elavl2-206;Elavl2-203;Elavl2-205;Elavl2-215;Elavl2-216;Elavl2-212;Elavl2-214,Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,8,31,15569,ENSMUSG00000008489,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14915,cg19535301,0.00000261,0.00000341,0.764998483,0.444854423,gain,ns,-0.0000131,0.0000058,-2.259139479,0.024569058,neg,ns,0.00843264,0.001699063,4.963110902,0.00000115,pos,ns,5.940587152,-0.000302399,0.0000584,-5.175348961,0.00000041,neg,yes,0.92243347,Fam222b,Fam222b_Exon,11,78154464,78154513,78154512,78154513,50,+,ACTACCTCAGTGTGTGAGGGCCAGATCGCCAACCCCAGCCCCATTAGTCG,"Exon (Fam222b-201/Fam222b, exon 3 of 3)",11,78094660,78156700,62041,1,Fam222b-201,59804,Fam222b-201;Fam222b-202;Fam222b-203;Traf4-203;Traf4-201,Fam222b;Fam222b;Fam222b;Traf4;Traf4,0;0;0;11076;11076,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,21,216971,ENSMUSG00000037750,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7856,cg27399271,0.0000176,0.00000422,4.174493496,0.0000388,gain,ns,-0.0000162,0.00000717,-2.259036458,0.024575541,neg,ns,-0.001022812,0.002100286,-0.486986671,0.626611926,neg,ns,0.203001343,0.0000341,0.0000722,0.472127839,0.637167709,pos,ns,0.890499222,Gtdc1,Gtdc1_threeUTR,2,44564938,44564987,44564938,44564939,50,+,CGTGGCCCTTTGAGGACACAAGAAGGCTCCGATGATAACCTGGCAACCTA,3' UTR,2,44564412,44861622,297211,2,Gtdc1-203,296635,Gtdc1-203;Gtdc1-201;Gtdc1-207,Gtdc1;Gtdc1;Gtdc1,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,43,227835,ENSMUSG00000036890,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9228,cg02273345,-0.000057,0.0000134,-4.26292317,0.0000268,loss,ns,0.0000513,0.0000227,2.259035554,0.024575598,pos,ns,0.011469834,0.006657678,1.722797997,0.085922324,pos,ns,1.065893987,-0.000649295,0.000228957,-2.835881263,0.004870502,neg,ns,0.718040333,Csmd3,Csmd3_Exon,15,47755439,47755488,47755439,47755440,50,+,CGAATTGTGATCTGATTACCTGAACTCAGTGGAAGTGATTCTCCTACTCA,"Exon (Csmd3-204/Csmd3, exon 33 of 69)",15,47580637,48791933,1211297,2,Csmd3-204,1036445,Csmd3-204;Csmd3-201;Csmd3-209;Csmd3-207,Csmd3;Csmd3;Csmd3;Csmd3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,16,239420,ENSMUSG00000022311,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11960,cg04895403,0.000096,0.00000776,12.36123083,8.30E-29,gain,yes,-0.0000298,0.0000132,-2.2586999,0.024596731,neg,ns,0.0000325,0.003863469,0.008405291,0.993299034,pos,ns,0.002919987,0.000105505,0.000132864,0.794077477,0.427757764,pos,ns,0.178563785,Tbr1,Tbr1_Exon,2,61804886,61804935,61804886,61804887,50,+,CGAATCAGTCAGATACAGACAATTTTCCTGACTCCAAGGACTCACCAGGG,Promoter (<=1kb),2,61804453,61814114,9662,1,Tbr1-201,433,Psmd14-201;Psmd14-208;Psmd14-202;Tbr1-204;Tbr1-201;Tbr1-202;Tbr1-203,Psmd14;Psmd14;Psmd14;Tbr1;Tbr1;Tbr1;Tbr1,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,24,27,21375,ENSMUSG00000035033,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
17309,cg15933701,-0.00000628,0.0000114,-0.548400609,0.583811565,loss,ns,0.0000439,0.0000194,2.258496214,0.024609563,pos,ns,0.007430908,0.00569524,1.304757558,0.192943157,pos,ns,0.71457062,-0.000409431,0.000195859,-2.090440313,0.037392579,neg,ns,0.709039335,Dmrta1,Dmrta1_Intergenic_upstream,4,89630814,89630863,89630862,89630863,50,+,TTTCAAGCTCAATCGGGTAGAAAATCTAACACAGAATGTGTGCACAAACG,Distal Intergenic,4,89679436,89691919,12484,1,Dmrta1-202,-48573,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,4,242523,ENSMUSG00000043753,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6161,cg22515103,0.0000135,0.0000102,1.327650379,0.185270445,gain,ns,-0.000039,0.0000173,-2.258310245,0.024621284,neg,ns,0.010140315,0.005062921,2.002858589,0.04606288,pos,ns,1.33664891,-0.000286753,0.000174113,-1.646933514,0.100584992,neg,ns,0.191891912,Nrg2,Nrg2_Intron,18,36196125,36196174,36196173,36196174,50,+,TACTGGGCTATGATGGCAGCTTTCCAGCCCCACATGCCATACATCAGCCG,"Intron (Nrg2-203/Nrg2, intron 1 of 9)",18,36017652,36197380,179729,2,Nrg2-203,1206,Nrg2-203;Nrg2-201,Nrg2;Nrg2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,20,100042150,ENSMUSG00000060275,conserved gene and region,18,36196173,36196361,189,*,189,13,0.698412698,0.627586207,0.068783069,0.000000034,CpGisland,TRUE,U3,Pr-B
24475,cg10477762,0.0000112,0.00000623,1.805724773,0.071931276,gain,ns,-0.0000239,0.0000106,-2.258304747,0.024621631,neg,ns,-0.008436151,0.003098507,-2.722650805,0.006842693,neg,ns,2.164772915,0.000160911,0.000106557,1.510085841,0.132040103,pos,ns,0.879853329,Atxn2l,Atxn2l_threeUTR,7,126492575,126492624,126492575,126492576,50,+,CGGCGGCGACTGTGGCTTCTGCCCACCCTACATACTTCACAGACAGGTGC,3' UTR,7,126491708,126503437,11730,2,Atxn2l-201,10813,Atxn2l-201;Atxn2l-203;Atxn2l-206;Atxn2l-205;Atxn2l-202;Tufm-201;Tufm-202;Tufm-203;Tufm-204;Tufm-205;Tufm-206,Atxn2l;Atxn2l;Atxn2l;Atxn2l;Atxn2l;Tufm;Tufm;Tufm;Tufm;Tufm;Tufm,0;0;0;0;0;5214;5197;4946;3961;3889;3204,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,8,13,233871,ENSMUSG00000032637,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1982,cg22507112,-0.00000521,0.00000331,-1.570723886,0.117266881,loss,ns,0.0000127,0.00000563,2.257986132,0.024641724,pos,ns,0.003298312,0.00164963,1.99942484,0.046434895,pos,ns,1.333155536,-0.000145835,0.0000567,-2.570659208,0.010617019,neg,ns,0.934246938,Gm5283,Gm5283_Intergenic_downstream,3,16820566,16820615,16820614,16820615,50,+,TACATTTGTATAAATGTCACAGCCTGTAATCACTTCCTTTGTCATCGACG,Distal Intergenic,3,17230642,17230975,334,2,Gm5283-201,410360,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,10,383936,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17367,cg10973332,0.0000325,0.0000392,0.829889835,0.407239687,gain,ns,0.000150313,0.0000666,2.257959887,0.024643379,pos,ns,-0.028815445,0.019502785,-1.47750413,0.140555759,neg,ns,0.852151357,0.001279636,0.000670699,1.907913576,0.057326114,pos,ns,0.727543041,Tiam1,Tiam1_Exon,16,89898031,89898080,89898079,89898080,50,+,GTCCTCCCGCCAGATGTCTGCAGATTTGGAGCGTTTCTTCTTAAAGCTCG,"Exon (Tiam1-213/Tiam1, exon 4 of 28)",16,89787111,89974699,187589,2,Tiam1-213,76619,Tiam1-213;Tiam1-204;Tiam1-201;Tiam1-211;Tiam1-206;Tiam1-209,Tiam1;Tiam1;Tiam1;Tiam1;Tiam1;Tiam1,0;0;0;76619;62657;20905,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,21844,ENSMUSG00000002489,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15450,cg04130971,-0.0000102,0.00000433,-2.35415591,0.019188508,loss,ns,-0.0000166,0.00000735,-2.257884463,0.024648138,neg,ns,-0.002300233,0.002153009,-1.068380678,0.286180067,neg,ns,0.543360619,0.0000805,0.000074,1.086559233,0.278075793,pos,ns,0.895310605,Tnrc6b,Tnrc6b_threeUTR,15,80932148,80932197,80932148,80932149,50,+,CGATACTACGGTGAAAGCCGGGTGCTAGAGCCCCTCTTGTTTACAAGACA,3' UTR,15,80711313,80941085,229773,1,Tnrc6b-201,220835,Tnrc6b-201;Tnrc6b-208;Tnrc6b-210,Tnrc6b;Tnrc6b;Tnrc6b,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,24,213988,ENSMUSG00000047888,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2232,cg05267627,-0.00000677,0.00000216,-3.128043622,0.00192687,loss,ns,-0.0000083,0.00000367,-2.257650592,0.024662899,neg,ns,-0.003512129,0.001076462,-3.262660709,0.001226861,neg,ns,2.911204545,0.000064,0.000037,1.728924898,0.084818121,pos,ns,0.942277427,Gm30341,Gm30341_Intergenic_upstream,3,18714371,18714420,18714371,18714372,50,-,CGTTAGTGTTAGCGAATTGCTCGGGTCTGCTTACTTTATTATCTAGATCA,Distal Intergenic,3,18753077,18753365,289,1,Gm30341-201,-38706,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,17,23,102632201,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24966,cg22847253,0.0000152,0.00000447,3.406825739,0.000743929,gain,ns,-0.0000171,0.00000759,-2.257096936,0.024697874,neg,ns,-0.001781637,0.002222452,-0.801653599,0.423367415,neg,ns,0.373282571,-0.000118333,0.0000764,-1.548254127,0.122581374,neg,ns,0.855059122,Idh3b,Idh3b_Exon,2,130280496,130280545,130280544,130280545,50,-,GCCGTGGGATTGGCTATATTCCTGCCCACTGCCTGGGCAAATGGGTGCCG,"Exon (Idh3b-201/Idh3b, exon 10 of 12)",2,130279309,130284547,5239,2,Idh3b-201,4002,Idh3b-201;Idh3b-204;Idh3b-205;Idh3b-203;Idh3b-202;Nop56-202;Nop56-212;Nop56-218;Nop56-204;Nop56-206;Nop56-205;Nop56-215;Nop56-210;Nop56-216;Nop56-219;Nop56-207;Nop56-217;Nop56-209;Nop56-213;Nop56-201;Nop56-211;Nop56-203;Nop56-214;Nop56-208,Idh3b;Idh3b;Idh3b;Idh3b;Idh3b;Nop56;Nop56;Nop56;Nop56;Nop56;Nop56;Nop56;Nop56;Nop56;Nop56;Nop56;Nop56;Nop56;Nop56;Nop56;Nop56;Nop56;Nop56;Nop56,0;0;0;3889;3870;0;0;0;0;6004;5665;4700;0;0;0;0;0;0;3407;3339;3278;3274;3181;2785,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,170718,ENSMUSG00000027406,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22492,cg26107989,0.0000445,0.0000148,2.998982551,0.00292825,gain,ns,-0.0000569,0.0000252,-2.256873027,0.024712031,neg,ns,-0.001185706,0.007389093,-0.160467,0.872617729,neg,ns,0.059175968,0.000100992,0.00025411,0.397433979,0.691320974,pos,ns,0.693690074,Gm12830,Gm12830_Intron,4,114841541,114841590,114841589,114841590,50,+,GAAACTTCATGCTTACACCTGACTAAATCATCAGGCTGAAATCGGAGCCG,"Intron (Gm12830-201/Gm12830, intron 1 of 3)",4,114821722,114856166,34445,1,Gm12830-201,19819,Gm12830-201,Gm12830,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,26,433746,ENSMUSG00000055198,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
19953,cg04927173,0.00000239,0.00000273,0.875237744,0.382122177,gain,ns,-0.0000105,0.00000463,-2.256393504,0.024742373,neg,ns,-0.00270195,0.001357415,-1.990511301,0.047412471,neg,ns,1.324107405,0.0000589,0.0000467,1.262751551,0.207627495,pos,ns,0.904414017,Clpb,Clpb_Intron,7,101746501,101746550,101746549,101746550,50,-,GAAACATATTTCCCCAATGAGTGACCTTCCACAGCTGTAGCGGGCAGGCG,"Intron (Clpb-201/Clpb, intron 5 of 15)",7,101663633,101790168,126536,1,Clpb-201,82868,Clpb-201;Clpb-202;Clpb-211;Clpb-208;Clpb-207;Clpb-210,Clpb;Clpb;Clpb;Clpb;Clpb;Clpb,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,21,21,20480,ENSMUSG00000001829,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5047,cg15584686,0.0000123,0.00000466,2.646255794,0.008554214,gain,ns,-0.0000179,0.00000792,-2.255885858,0.02477453,neg,ns,0.010017767,0.0023207,4.316701482,0.0000213,pos,ns,4.67092618,-0.000412222,0.0000798,-5.165131036,0.000000431,neg,yes,0.1109926,Gmds,Gmds_Intron,13,32008985,32009034,32008985,32008986,50,+,CGTTTGCCAGGGTTAAAGGCTGGGTCAATTTGATCAAGACGCTAAAATTA,"Intron (Gmds-201/Gmds, intron 7 of 10)",13,31819579,32338740,519162,2,Gmds-201,329706,Gmds-201,Gmds,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,5,218138,ENSMUSG00000038372,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6199,cg27097585,-0.0000267,0.00000551,-4.843349354,0.00000202,loss,ns,-0.0000211,0.00000936,-2.255590817,0.024793237,neg,ns,-0.002604922,0.002741778,-0.950084953,0.342809194,neg,ns,0.464947539,0.0000355,0.0000943,0.376851461,0.70654182,pos,ns,0.900467738,Pura,Pura_threeUTR,18,36289173,36289222,36289173,36289174,50,+,CGTGCAGCAATTTCCAGTGAACCTGTACTTGGACATCAGGTAGTGAGTCT,3' UTR,18,36281097,36292535,11439,1,Pura-201,8076,Pura-201,Pura,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,19,19290,ENSMUSG00000043991,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7760,cg24164061,0.0000245,0.00000532,4.605988425,0.000006,gain,ns,-0.0000204,0.00000904,-2.255568396,0.024794659,neg,ns,-0.007884821,0.002647845,-2.977825622,0.003132001,neg,ns,2.504178153,0.000220948,0.0000911,2.426426908,0.015818371,pos,ns,0.872944578,Rnf38,Rnf38_Exon,4,44187478,44187527,44187478,44187479,50,-,CGTGATGGATGGACTGGCACTGAAAAGAAGCACCAACACTACCTACAAGA,"Exon (Rnf38-205/Rnf38, exon 2 of 4)",4,44149114,44228312,79199,2,Rnf38-205,40785,Rnf38-205;Rnf38-216,Rnf38;Rnf38,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,6,73469,ENSMUSG00000035696,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10162,cg09207400,0.000219316,0.0000192,11.40938457,2.07E-25,gain,yes,-0.0000737,0.0000327,-2.255499239,0.024799045,neg,ns,0.024939656,0.009567182,2.606792236,0.009581224,pos,ns,2.018579022,-0.001056787,0.000329015,-3.211975913,0.001456759,neg,ns,0.283972615,Gm28308,Gm28308_fiveUTR,6,52204506,52204555,52204506,52204507,50,+,CGTGCTTTTGTTGTCCAGTCGTAAATCCTGCCTGATGACCTCTAGAGGTA,5' UTR,6,52163359,52213339,49981,2,Gm28308-201,8784,Gm28308-201;Hoxa3-201;Hoxa3-203;Hoxa5-201;Hoxa6-201,Gm28308;Hoxa3;Hoxa3;Hoxa5;Hoxa6,0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,21,103,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
10363,cg07777480,-0.00000344,0.00000627,-0.548338898,0.583853879,loss,ns,0.000024,0.0000107,2.25500612,0.024830344,pos,ns,0.007579199,0.003120743,2.428651777,0.01572349,pos,ns,1.803451047,-0.000210993,0.000107322,-1.965979514,0.050193142,neg,ns,0.868766222,Ddx10,Ddx10_Exon,9,53233936,53233985,53233936,53233937,50,+,CGTTTCTTGGGGAGATTTTCAATAACAGCATTCATGGTATCAGCAAAGCC,"Exon (Ddx10-201/Ddx10, exon 6 of 18)",9,53098635,53248053,149419,2,Ddx10-201,14068,Ddx10-201,Ddx10,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,77591,ENSMUSG00000053289,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15621,cg24305841,-0.0000436,0.0000122,-3.563586149,0.000423412,loss,ns,-0.0000469,0.0000208,-2.254963151,0.024833073,neg,ns,0.006712136,0.006089835,1.102186796,0.271235434,pos,ns,0.566653575,-0.000192176,0.000209429,-0.917620377,0.359530999,neg,ns,0.588762432,Nfib,Nfib_Intron,4,82304696,82304745,82304744,82304745,50,+,TGGAATTACATCATGTCTGGTTTCTCCTGGTTACCAGACGGCTTGAGACG,"Intron (Nfib-201/Nfib, intron 11 of 11)",4,82290173,82505308,215136,2,Nfib-201,200563,Nfib-201;Nfib-203;Nfib-202;Nfib-205;Nfib-206;Nfib-204,Nfib;Nfib;Nfib;Nfib;Nfib;Nfib,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,66,18028,ENSMUSG00000008575,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11799,cg11686481,-0.0000176,0.00000796,-2.207867653,0.027985421,loss,ns,0.0000305,0.0000135,2.254860236,0.02483961,pos,ns,0.012058004,0.003959526,3.045315011,0.002523826,pos,ns,2.597940544,-0.000388199,0.000136168,-2.85088991,0.004652093,neg,ns,0.876540877,Mbnl1,Mbnl1_threeUTR,3,60627958,60628007,60628006,60628007,50,+,TTAGATTATTACATTACGGGTTGGAACCCATACCAATGTAATTTCAATCG,3' UTR,3,60473079,60628200,155122,1,Mbnl1-211,154879,Mbnl1-211;Mbnl1-201;Mbnl1-202;Mbnl1-203;Mbnl1-218;Mbnl1-219;Mbnl1-214;Mbnl1-207;Mbnl1-212;Mbnl1-215;Mbnl1-223;Mbnl1-213,Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,36,56758,ENSMUSG00000027763,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21706,cg24364053,-0.00000243,0.00000554,-0.438780134,0.661126504,loss,ns,-0.0000212,0.00000941,-2.254699801,0.024849803,neg,ns,-0.008104963,0.002757958,-2.93875481,0.003542745,neg,ns,2.450660125,0.000143856,0.0000948,1.516729259,0.130354103,pos,ns,0.077471491,Prpf38b,Prpf38b_threeUTR,3,108910368,108910417,108910368,108910369,50,-,CGAGCCTCGCTGCAAGACTGAGTCAATCCTGCTAACGAAACAAGAACTGA,3' UTR,3,108902805,108911696,8892,2,Prpf38b-204,1279,Prpf38b-204;Prpf38b-201;Prpf38b-208;Prpf38b-202;Prpf38b-203;Prpf38b-206;Prpf38b-205;Prpf38b-207,Prpf38b;Prpf38b;Prpf38b;Prpf38b;Prpf38b;Prpf38b;Prpf38b;Prpf38b,0;0;0;-4783;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,13,66921,ENSMUSG00000027881,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
4714,cg09300383,-0.00000281,0.00000267,-1.050430902,0.294338219,loss,ns,0.0000102,0.00000454,2.254175369,0.02488315,pos,ns,0.002575182,0.001331147,1.934558676,0.053954152,pos,ns,1.267975131,-0.000106472,0.0000458,-2.325823061,0.0206728,neg,ns,0.931960234,Mecom,Mecom_Intron,3,30229272,30229321,30229272,30229273,50,+,CGCTCCCAGGTTGGTGACATCACCTGTTCACCCACTCAAAATTGATGATG,"Intron (Mecom-212/Mecom, intron 1 of 15)",3,29951299,30509733,558435,2,Mecom-212,280412,Mecom-212;Mecom-210;Mecom-213;Mecom-207;Mecom-208;Mecom-211,Mecom;Mecom;Mecom;Mecom;Mecom;Mecom,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,80,14013,ENSMUSG00000027684,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1743,cg00180589,-0.0000127,0.0000105,-1.202658689,0.230026188,loss,ns,0.0000404,0.0000179,2.254174899,0.02488318,pos,ns,0.001694404,0.005246311,0.322970602,0.746935242,pos,ns,0.126717049,-0.0000303,0.00018042,-0.167892385,0.866777418,neg,ns,0.561102164,Gm5513,Gm5513_Intergenic_upstream,19,14973412,14973461,14973460,14973461,50,-,AGGCCTTAATGGTCTGGCAGTCCTTTTTGTCACAATTTAATGGCATATCG,Distal Intergenic,19,14959549,14960766,1218,2,Gm5513-201,-12695,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,22,433225,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6580,cg21846055,0.0000202,0.00000502,4.027084509,0.0000711,gain,ns,-0.0000192,0.00000852,-2.253888867,0.024901384,neg,ns,-0.002518579,0.002496595,-1.008805815,0.313854526,neg,ns,0.503271604,0.0000255,0.0000859,0.297333189,0.76641129,pos,ns,0.096608326,Zfp536,Zfp536_fiveUTR,7,37773594,37773643,37773594,37773595,50,-,CGCGCTGTAACCTTGTGGCGTATTTAATGTAAATAAGGCAGTTATGTTGC,Promoter (<=1kb),7,37569629,37773641,204013,2,Zfp536-208,0,Zfp536-202;Zfp536-201;Zfp536-203;Zfp536-206;Zfp536-209;Zfp536-208;Zfp536-205;Zfp536-207;Zfp536-210,Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536,0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,112,243937,ENSMUSG00000043456,conserved gene but different region,7,37773505,37773708,204,*,204,20,0.558823529,1.259259259,0.098039216,2.20E-15,CpGisland,TRUE,U13,Hc-P
9688,cg07405701,-0.00000101,0.00000523,-0.192854101,0.847199516,loss,ns,-0.00002,0.00000888,-2.253463979,0.024928446,neg,ns,-0.005637273,0.002601556,-2.166885311,0.031004981,neg,ns,1.508568529,0.000204249,0.0000895,2.282941665,0.023110526,pos,ns,0.879144702,Gm7481,Gm7481_Intergenic_upstream,12,49992924,49992973,49992924,49992925,50,+,CGACTGTCACTTTATGTCATTAACAATTTTCTAAAGCCATTACAGATGGG,Distal Intergenic,12,49840757,49841751,995,2,Gm7481-201,-151173,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,27,37,665077,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1560,cg04260531,-0.0000197,0.00000903,-2.182542383,0.029819726,loss,ns,0.0000346,0.0000153,2.253305798,0.024938528,pos,ns,0.008358841,0.004493826,1.860071952,0.0638223,pos,ns,1.195027552,-0.000301251,0.000154542,-1.949307898,0.052160245,neg,ns,0.862298978,Gm18714,Gm18714_Intergenic_upstream,15,13733867,13733916,13733867,13733868,50,-,CGCTCCATTACTCTGAATCAAACTGTCCCTGAAAGAACAAGAGGAAGAAA,Distal Intergenic,15,13713972,13714241,270,2,Gm18714-201,-19675,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,2,100417610,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5565,cg21761702,0.000150115,0.0000137,10.97865008,6.60E-24,gain,yes,-0.0000523,0.0000232,-2.253189439,0.024945946,neg,ns,0.036479733,0.00680538,5.360425758,0.000000162,pos,ns,6.789348693,-0.000775769,0.000234036,-3.314737802,0.001026082,neg,ns,0.675559669,Pbx3,Pbx3_Intron,2,34275664,34275713,34275712,34275713,50,-,CAATGTTACAGCTTTAAGAGCAGTTTGTCAACGATTAATACTGCCAAACG,"Intron (Pbx3-202/Pbx3, intron 2 of 7)",2,34171457,34372038,200582,2,Pbx3-202,96325,Pbx3-202;Pbx3-201;Pbx3-210;Pbx3-206;Pbx3-207;Pbx3-209;Pbx3-204;Pbx3-205;Pbx3-203,Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,82,18516,ENSMUSG00000038718,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12828,cg25841906,-0.000000481,0.00000127,-0.378814111,0.70508522,loss,ns,0.00000486,0.00000216,2.253161084,0.024947754,pos,ns,0.00103019,0.000631997,1.630054892,0.104105502,pos,ns,0.982526316,-0.0000228,0.0000217,-1.050106406,0.29448713,neg,ns,0.961810071,Rsrc1,Rsrc1_Intron,3,67265258,67265307,67265258,67265259,50,+,CGGCTATGTTCTGCGCCTAATGACTCCTCCAAAGGCAGATTTATGAAGAA,"Intron (Rsrc1-206/Rsrc1, intron 6 of 9)",3,66981390,67356559,375170,1,Rsrc1-206,283868,Rsrc1-206;Rsrc1-203;Rsrc1-202;Rsrc1-201;Rsrc1-209;Rsrc1-205,Rsrc1;Rsrc1;Rsrc1;Rsrc1;Rsrc1;Rsrc1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,37,66880,ENSMUSG00000034544,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26351,cg27395845,-0.0000088,0.00000563,-1.563530951,0.11894799,loss,ns,0.0000215,0.00000956,2.253125572,0.024950019,pos,ns,0.005982998,0.002801101,2.135944705,0.033467088,pos,ns,1.475382077,-0.000296608,0.0000963,-3.079089984,0.002262093,neg,ns,0.90857919,Brinp3,Brinp3_threeUTR,1,146902338,146902387,146902386,146902387,50,-,AGACATTCTACTTTTTACAATAAATTTCATTTGTAATTTTATATGTTCCG,3' UTR,1,146494760,146902471,407712,1,Brinp3-201,407578,Brinp3-201;Brinp3-205;Brinp3-203,Brinp3;Brinp3;Brinp3,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,5,215378,ENSMUSG00000035131,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10147,cg12041264,0.000137493,0.0000122,11.2593202,6.96E-25,gain,yes,-0.0000467,0.0000207,-2.253012454,0.024957233,neg,ns,0.016108286,0.006077783,2.650355609,0.008453405,pos,ns,2.072968344,-0.000605663,0.000209014,-2.897708693,0.004026804,neg,ns,0.486517499,Gm28308,Gm28308_Exon,6,52204224,52204273,52204224,52204225,50,+,CGGAGTGCATGCTCGCCGAGTCCCTGAATTGCTCGCTCACGGAACTATGA,"Exon (Hoxa5-201/Hoxa5, exon 1 of 2)",6,52163359,52213339,49981,2,Gm28308-201,9066,Gm28308-201;Hoxa3-201;Hoxa3-203;Hoxa5-201;Hoxa6-201,Gm28308;Hoxa3;Hoxa3;Hoxa5;Hoxa6,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,30,103,,NA,mapped to different genes,6,52203658,52204321,664,*,664,70,0.680722892,0.922222222,0.105421687,5.32E-55,CpGisland,TRUE,U3,Pr-B
6512,cg15316343,0.0000396,0.00000846,4.681240387,0.00000427,gain,ns,0.0000324,0.0000144,2.252963023,0.024960387,pos,ns,0.011100404,0.00421217,2.635317479,0.008828481,pos,ns,2.054114023,-0.0000616,0.000144856,-0.425518857,0.670753728,neg,ns,0.675593394,Zfp536,Zfp536_Exon,7,37568251,37568300,37568299,37568300,50,-,GCAGGCATTTTCTGCTTGGAGCCATCTGCTCCCACTAACACGTACTCCCG,Promoter (<=1kb),7,37318024,37568390,250367,2,Zfp536-211,90,Zfp536-211;Zfp536-202;Zfp536-201;Zfp536-203;Zfp536-206;Zfp536-209;Zfp536-208,Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,13,112,243937,ENSMUSG00000043456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6097,cg02204128,-0.00000178,0.00000152,-1.173501588,0.241495543,loss,ns,0.00000582,0.00000258,2.252587197,0.024984372,pos,ns,0.0011112,0.000756366,1.469130285,0.142811504,pos,ns,0.845236808,-0.00000905,0.000026,-0.347853969,0.728185933,neg,ns,0.958275543,Nrg2,Nrg2_Exon,18,36031901,36031950,36031901,36031902,50,-,CGAACTGCTGACACCTGTCCCCGGTGTATCCCACAGGACACCTACCAAAA,Promoter (<=1kb),18,36021070,36031941,10872,2,Nrg2-202,0,Nrg2-203;Nrg2-206;Nrg2-202;Nrg2-205;Nrg2-204;Nrg2-201,Nrg2;Nrg2;Nrg2;Nrg2;Nrg2;Nrg2,0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,20,100042150,ENSMUSG00000060275,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1711,cg17844121,0.0000383,0.00000716,5.341072904,0.000000179,gain,yes,-0.0000274,0.0000122,-2.252548515,0.024986842,neg,ns,-0.006780261,0.003565844,-1.901446043,0.058170634,neg,ns,1.235296203,0.000117196,0.000122629,0.955693002,0.339972023,pos,ns,0.86837423,Ppp1r3a,Ppp1r3a_threeUTR,6,14717366,14717415,14717414,14717415,50,+,ACTTCATAGCCTGCTAAGGAGCAACAGCTGTACCTAATTTCAACTTGACG,3' UTR,6,14713977,14755274,41298,2,Ppp1r3a-201,37859,Ppp1r3a-201,Ppp1r3a,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,3,140491,ENSMUSG00000042717,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24726,cg12504775,0.00000529,0.00000475,1.114730998,0.265829171,gain,ns,-0.0000182,0.00000807,-2.252380955,0.024997544,neg,ns,0.000634371,0.00236346,0.268407922,0.788563866,pos,ns,0.103163127,0.000045,0.0000813,0.553169238,0.580546227,pos,ns,0.909747612,Tspan9,Tspan9_Intron,6,127979207,127979256,127979207,127979208,50,-,CGTCTGTGCTCTGGACCGTAAAACAAGTTTTCATCAATAAATTAAGATAA,"Intron (Tspan9-203/Tspan9, intron 2 of 7)",6,127961396,128143563,182168,2,Tspan9-203,164307,Tspan9-203;Tspan9-202;Tspan9-201;Tspan9-204;Tspan9-211;Tspan9-209;Tspan9-208;Tspan9-207;Tspan9-206,Tspan9;Tspan9;Tspan9;Tspan9;Tspan9;Tspan9;Tspan9;Tspan9;Tspan9,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,8,109246,ENSMUSG00000030352,conserved gene and region,6,127979148,127979310,163,*,163,13,0.576687117,0.995770677,0.079754601,5.62E-09,CpGisland,TRUE,U11,Tr-P
26432,cg07734850,-0.0000531,0.00000973,-5.456137189,9.97E-08,loss,yes,-0.0000372,0.0000165,-2.251589338,0.025048154,neg,ns,-0.002915176,0.004842093,-0.602048746,0.547581765,neg,ns,0.261551023,-0.0000995,0.000166519,-0.597493313,0.550614255,neg,ns,0.831767749,Foxa2,Foxa2_Intron,2,147951800,147951849,147951848,147951849,50,-,GTCATTAAGTACTGTAAACATGTCCTGAATGAGTCCGTGTCACAAAGACG,"Intron (9030622O22Rik-201/9030622O22Rik-201, intron 5 of 6)",2,148044240,148045464,1225,2,Foxa2-203,93664,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,25,15376,ENSMUSG00000037025,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7850,cg07431672,-0.00000425,0.00000362,-1.175515544,0.24069055,loss,ns,0.0000138,0.00000615,2.251521543,0.025052493,pos,ns,0.000704456,0.001800813,0.391187673,0.695927248,pos,ns,0.157436159,0.0000375,0.0000619,0.605673536,0.545174736,pos,ns,0.514914335,Nrcam,Nrcam_threeUTR,12,44532611,44532660,44532659,44532660,50,+,ATTCTCTTCCTGTGCCAGATGATTAGTGCACTGGAAGTACCTCTTGATCG,3' UTR,12,44328886,44600760,271875,1,Nrcam-202,203725,Nrcam-202;Nrcam-210;Nrcam-217;Nrcam-201;Nrcam-216;Nrcam-204;Nrcam-207;Nrcam-212;Nrcam-208;Nrcam-215;Nrcam-206;Nrcam-213,Nrcam;Nrcam;Nrcam;Nrcam;Nrcam;Nrcam;Nrcam;Nrcam;Nrcam;Nrcam;Nrcam;Nrcam,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,3,319504,ENSMUSG00000020598,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12380,cg10394294,0.0000941,0.0000182,5.160591717,0.000000441,gain,yes,-0.0000697,0.000031,-2.251366794,0.025062399,neg,ns,0.017406152,0.009075102,1.91801181,0.056028005,pos,ns,1.251594839,-0.000346713,0.000312092,-1.110931226,0.267458856,neg,ns,0.455030865,Fign,Fign_Intron,2,64079495,64079544,64079543,64079544,50,+,AAACAATAAGAAATCCCTTTCCTCTCAGGCTTTCAAGGCCGTGTTAATCG,"Intron (Fign-203/Fign, intron 2 of 2)",2,63971507,64098012,126506,2,Fign-203,18468,Fign-203;Fign-201;Fign-202;Fign-204,Fign;Fign;Fign;Fign,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,84,60344,ENSMUSG00000075324,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26456,cg19519314,0.000000863,0.00000488,0.177000757,0.859623382,gain,ns,0.0000186,0.00000828,2.251302156,0.025066537,pos,ns,-0.002190861,0.002426948,-0.902722576,0.367374037,neg,ns,0.43489154,0.0000738,0.0000835,0.884152212,0.37729925,pos,ns,0.815720996,Disp3,Disp3_Exon,4,148252867,148252916,148252915,148252916,50,-,CGCTCTATACACCTAAGCAGTGGGTTGACAGAGACAAGACACATGACTCG,"Exon (Disp3-201/Disp3, exon 13 of 21)",4,148240264,148287965,47702,2,Disp3-201,35049,Disp3-201,Disp3,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,242748,ENSMUSG00000041544,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10186,cg07456773,0.0000285,0.00000792,3.60228134,0.000367269,gain,ns,0.0000303,0.0000135,2.251073295,0.025081195,pos,ns,0.00435949,0.003941483,1.106053319,0.269561042,pos,ns,0.569342874,0.0000463,0.000135547,0.341851599,0.732694201,pos,ns,0.173964396,Hoxa7,Hoxa7_fiveUTR,6,52217382,52217431,52217430,52217431,50,-,GTTCACATAATACGAAGAACTCATAATTTTGACCTGTGATTTGTTGTCCG,5' UTR,6,52214491,52220393,5903,2,Hoxa7-205,2962,Gm28308-201;Hoxa3-201;Hoxa3-203;Hoxa7-205;Hoxa7-201;Hoxa7-202;Hoxa7-204;Hoxa7-203,Gm28308;Hoxa3;Hoxa3;Hoxa7;Hoxa7;Hoxa7;Hoxa7;Hoxa7,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,9,10,15404,ENSMUSG00000038236,conserved gene and region,6,52217250,52217463,214,*,214,20,0.546728972,1.271538919,0.093457944,5.89E-15,CpGisland,TRUE,U3,Pr-B
1468,cg05647280,-0.00000556,0.00000612,-0.908301844,0.364424336,loss,ns,0.0000234,0.0000104,2.250945044,0.025089412,pos,ns,0.010739788,0.003045454,3.526498499,0.000484698,pos,ns,3.314528618,-0.000287198,0.000104733,-2.742196961,0.006457667,neg,ns,0.906873751,Usp9x,Usp9x_Exon,X,13116607,13116656,13116655,13116656,50,+,AGTTCTTCTCGTTTCAGTCAAACTCAGCGAAGTCCCCATGTGTTTTATCG,"Exon (Usp9x-206/Usp9x, exon 15 of 17)",20,13071498,13123449,51952,1,Usp9x-206,45109,Usp9x-206;Usp9x-204;Usp9x-201;Usp9x-205,Usp9x;Usp9x;Usp9x;Usp9x,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,10,22284,ENSMUSG00000031010,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13785,cg19040596,0.0000981,0.0000129,7.587229629,3.85E-13,gain,yes,-0.0000494,0.000022,-2.250862141,0.025094725,neg,ns,0.049345825,0.0064335,7.670137058,2.24E-13,pos,yes,12.64971791,-0.000643728,0.000221248,-2.909536023,0.003881477,neg,ns,0.505633677,Rfx7,Rfx7_Exon,9,72619192,72619241,72619240,72619241,50,-,AAGCCAATCAGTTCCATTGACAGTCATGATGCAGACAGCCTTCCCAAACG,"Exon (Rfx7-202/Rfx7, exon 9 of 9)",9,72532240,72622829,90590,1,Rfx7-202,86952,Rfx7-202;Rfx7-201,Rfx7;Rfx7,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,8,319758,ENSMUSG00000037674,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13846,cg12455710,-0.00000506,0.00000223,-2.270086909,0.023888562,loss,ns,0.00000852,0.00000378,2.25076446,0.025100987,pos,ns,0.003197619,0.001108357,2.885008401,0.00418837,pos,ns,2.377954908,-0.0000657,0.0000381,-1.722878941,0.08590766,neg,ns,0.947852491,Ola1,Ola1_Intron,2,73098888,73098937,73098888,73098889,50,+,CGAGCAAAGCAAAGGAGGAAAGAACCACCCGCAACCCAAACAAACTTAGC,"Intron (Ola1-201/Ola1, intron 9 of 10)",2,73092801,73214447,121647,2,Ola1-201,115510,Ola1-201;Ola1-206;Ola1-203,Ola1;Ola1;Ola1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,19,67059,ENSMUSG00000027108,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26249,cg19428989,0.00014122,0.0000165,8.561366591,5.28E-16,gain,yes,-0.0000631,0.000028,-2.250733413,0.025102977,neg,ns,0.047876949,0.008209729,5.831733278,1.38E-08,pos,ns,7.860760777,-0.001983149,0.000282332,-7.024176994,1.37E-11,neg,yes,0.359753845,Cpsf4,Cpsf4_Exon,5,145178759,145178808,145178807,145178808,50,+,AAAGTAACAATCCGCCATTACAAAGGTCGTCCTCCTTGATCCAGTTAACG,"Exon (Cpsf4-202/Cpsf4, exon 7 of 8)",5,145167213,145182041,14829,1,Cpsf4-205,11546,Atp5j2-202;Atp5j2-204;Atp5j2-201;Cpsf4-205;Cpsf4-201;Cpsf4-202;Cpsf4-207;Cpsf4-204;Cpsf4-206;Cpsf4-203,Atp5j2;Atp5j2;Atp5j2;Cpsf4;Cpsf4;Cpsf4;Cpsf4;Cpsf4;Cpsf4;Cpsf4,13254;12784;12784;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,54188,ENSMUSG00000029625,mapped to different genes,5,145178540,145178844,305,*,305,13,0.508196721,0.677777778,0.042622951,0.00000739,CpGisland,TRUE,NA,NRS
6316,cg24499125,-0.0000111,0.0000119,-0.934849809,0.350593332,loss,ns,0.0000454,0.0000202,2.250707841,0.025104617,pos,ns,0.004380453,0.005913458,0.740759969,0.459399701,pos,ns,0.337809291,-0.0000236,0.000203363,-0.115981825,0.907742042,neg,ns,0.241932655,Tshz3,Tshz3_Intergenic_downstream,7,36876633,36876682,36876681,36876682,50,+,AGTAATGGTGTGACATGATCACACTCACTTTCTGTAGTTAATCCTTCACG,Distal Intergenic,7,36698217,36702113,3897,1,Tshz3-202,178416,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,21,58,243931,ENSMUSG00000021217,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22455,cg21536160,-0.00000328,0.00000358,-0.91448453,0.361173041,loss,ns,0.0000137,0.00000609,2.250528435,0.025116121,pos,ns,0.006069479,0.001783537,3.403058109,0.000753885,pos,ns,3.122694616,-0.000134762,0.0000613,-2.197115055,0.028751938,neg,ns,0.929322585,Wwox,Wwox_Intron,8,114604699,114604748,114604747,114604748,50,-,CATAATTCAAAGGTAATGTAACTTGCCGTGTCGGACTTTAGTCCATTCCG,"Intron (Wwox-201/Wwox, intron 5 of 8)",8,114439655,115352708,913054,1,Wwox-201,165044,Wwox-201;Wwox-207;Wwox-203;Wwox-206,Wwox;Wwox;Wwox;Wwox,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,32,32,80707,ENSMUSG00000004637,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14767,cg26554534,-0.0000133,0.00000824,-1.616145178,0.107080104,loss,ns,0.0000315,0.000014,2.250486814,0.025118791,pos,ns,0.016039333,0.004099143,3.91285032,0.000112147,pos,ns,3.950210502,-0.000698181,0.000140969,-4.95271709,0.0000012,neg,yes,0.433930882,Gm11146,Gm11146_Intron,16,77593968,77594017,77593968,77593969,50,-,CGTTTCCATGACTCCCAGCCCCCAAAGGTGATGCGTTTTTCAGCTAATTC,"Intron (Mir99ahg-207/Mir99ahg-207, intron 7 of 7)",16,77588578,77602094,13517,2,Gm11146-201,8077,Gm11146-201,Gm11146,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,21,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27478,cg14029942,0.0000978,0.00000564,17.32532998,1.68E-47,gain,yes,-0.0000216,0.00000959,-2.249786595,0.025163743,neg,ns,-0.002613455,0.002808299,-0.930618454,0.352775101,neg,ns,0.452502075,0.000416783,0.0000966,4.315540052,0.0000214,pos,ns,0.847723021,Pbx1,Pbx1_Intron,1,168342082,168342131,168342082,168342083,50,+,CGGAGGGTAGGGAAACGAGACAGCCACCACGCGAGATGAAATAAACATGA,"Intron (Pbx1-208/Pbx1, intron 2 of 7)",1,168119364,168432270,312907,2,Pbx1-208,90139,Pbx1-208;Pbx1-205;Pbx1-206;Pbx1-201;Pbx1-202;Pbx1-204,Pbx1;Pbx1;Pbx1;Pbx1;Pbx1;Pbx1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,84,18514,ENSMUSG00000052534,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17758,cg21738180,0.000151454,0.0000113,13.37634207,1.59E-32,gain,yes,-0.0000433,0.0000192,-2.249732107,0.025167244,neg,ns,0.02103752,0.005635342,3.733139946,0.000224952,pos,ns,3.64791047,-0.000352658,0.000193799,-1.819711154,0.069767389,neg,ns,0.574822695,Fto,Fto_Intron,8,91631802,91631851,91631850,91631851,50,+,TAACTGTTCCCTGATATTGATTTCAGATTGTGTTCATCACACCCTTCTCG,"Intron (Fto-201/Fto, intron 8 of 8)",8,91313525,91668439,354915,1,Fto-201,318277,Fto-201;Fto-205,Fto;Fto,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,26,26383,ENSMUSG00000055932,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7122,cg09017211,-0.0000431,0.0000104,-4.125359547,0.0000476,loss,ns,-0.0000399,0.0000177,-2.24919755,0.025201612,neg,ns,0.01541583,0.005196622,2.966509673,0.003246233,pos,ns,2.488620334,-0.000659143,0.000178711,-3.688307138,0.000266512,neg,ns,0.571227463,Zfpm2,Zfpm2_Exon,15,41096190,41096239,41096190,41096191,50,-,CGCCTGCTGGACTCAATTCAGCTGCTTCCTCAGCAAGCTGCCATGGCTTC,"Exon (Zfpm2-201/Zfpm2, exon 6 of 8)",15,40655035,41104592,449558,1,Zfpm2-201,441155,Zfpm2-201;Zfpm2-203,Zfpm2;Zfpm2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,41,22762,ENSMUSG00000022306,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7403,cg05719620,0.00000524,0.0000043,1.220190876,0.223319926,gain,ns,-0.0000164,0.0000073,-2.249079687,0.025209195,neg,ns,-0.005648122,0.002139198,-2.640298974,0.008702611,neg,ns,2.060350429,0.00016779,0.0000736,2.280777172,0.023239964,pos,ns,0.917158929,Grik4,Grik4_Exon,9,42541848,42541897,42541896,42541897,50,-,TTGGTGTCCAGCAGGCCCCCAATCTGAGTGAGGTTGCAGTTTCGCTGCCG,"Exon (Grik4-202/Grik4, exon 18 of 21)",9,42518135,42944493,426359,2,Grik4-202,402596,Grik4-202;Grik4-201,Grik4;Grik4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,8,110637,ENSMUSG00000032017,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26820,cg07607355,0.00000339,0.00000196,1.731533746,0.084351463,gain,ns,0.00000748,0.00000332,2.24902778,0.025212535,pos,ns,0.003575196,0.000973798,3.671394873,0.000283991,pos,ns,3.546695023,-0.0000809,0.0000335,-2.414536369,0.016334078,neg,ns,0.053999403,Id1,Id1_Intergenic_downstream,2,152739434,152739483,152739434,152739435,50,-,CGGAGCTATTTAACCTGAGCATCCCCAGGTGTACGGAGGCGCCTGGCTGT,Downstream (2-3kb),2,152736251,152737410,1160,1,Id1-201,3232,Id1-201;Id1-202,Id1;Id1,3183;3183,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,5,5,15901,ENSMUSG00000042745,mapped to different genes,2,152739337,152739589,253,*,253,25,0.707509881,0.795197385,0.098814229,3.23E-19,CpGisland,TRUE,U6,En-Sp
367,cg12227989,-0.00000705,0.00000338,-2.089323717,0.037493656,loss,ns,0.0000129,0.00000573,2.249004801,0.025214014,pos,ns,0.004299403,0.001679847,2.559400761,0.010959611,pos,ns,1.960204874,-0.000137391,0.0000578,-2.378257106,0.018000431,neg,ns,0.935560142,Zfhx4,Zfhx4_Exon,3,5242663,5242712,5242663,5242664,50,+,CGTCTCCGCCATAATACAGGGGATTGGCAAAGACAAAGAACCTCTTATAA,"Exon (Zfhx4-203/Zfhx4, exon 2 of 11)",3,5218526,5413165,194640,1,Zfhx4-203,24137,Zfhx4-203;Zfhx4-202;Zfhx4-201;Zfhx4-204;Zfhx4-205,Zfhx4;Zfhx4;Zfhx4;Zfhx4;Zfhx4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,23,77,80892,ENSMUSG00000025255,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16273,cg02285637,0.000222026,0.0000258,8.618746209,3.53E-16,gain,yes,-0.0000984,0.0000438,-2.248726957,0.025231901,neg,ns,0.018602293,0.012821439,1.450874006,0.147826061,pos,ns,0.830248995,-0.000199704,0.000440928,-0.45291613,0.65092596,neg,ns,0.428910485,Lyl1,Lyl1_threeUTR,8,84704907,84704956,84704955,84704956,50,-,AAACAGACAGTAAACTACCCTTGTTTCTTATGTATCTCAGTGCAGAGACG,3' UTR,8,84701482,84704940,3459,1,Lyl1-204,3425,Lyl1-203;Lyl1-204;Lyl1-201;Lyl1-202;Nfix-207;Nfix-208;Nfix-204;Nfix-201;Nfix-202;Nfix-203;Nfix-206,Lyl1;Lyl1;Lyl1;Lyl1;Nfix;Nfix;Nfix;Nfix;Nfix;Nfix;Nfix,3458;0;3363;3126;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,TRUE,FALSE,threeUTR,2,2,17095,ENSMUSG00000034041,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
21665,cg21801213,0.0000105,0.0000042,2.490199367,0.013290633,gain,ns,-0.000016,0.00000713,-2.248726058,0.025231959,neg,ns,-0.000941807,0.002088821,-0.4508796,0.652391535,neg,ns,0.185491683,-0.0000264,0.0000718,-0.367916378,0.713186668,neg,ns,0.946887978,Zfhx3,Zfhx3_Exon,8,108794409,108794458,108794409,108794410,50,+,CGTGTGGTTACAAGCCTTTCCGCTGCGAGGTGTGTAACTACTCCACAACT,"Exon (Zfhx3-204/Zfhx3, exon 8 of 16)",8,107942644,108961630,1018987,1,Zfhx3-204,851765,Zfhx3-204;Zfhx3-202;Zfhx3-201,Zfhx3;Zfhx3;Zfhx3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,46,177,11906,ENSMUSG00000038872,conserved gene and region,8,108794313,108794435,123,*,123,11,0.650406504,0.845625,0.089430894,3.56E-08,CpGisland,TRUE,U10,Tr-S
2254,cg12839061,0.0000191,0.00000713,2.679637505,0.007763898,gain,ns,0.0000272,0.0000121,2.248631722,0.025238035,pos,ns,0.012802655,0.003546468,3.609972975,0.000356976,pos,ns,3.447360458,-0.000179029,0.000121963,-1.467902063,0.143144697,neg,ns,0.23431772,Meis1,Meis1_Intergenic_downstream,11,18874399,18874448,18874399,18874400,50,+,CGTTGAAATGCAAGACAGGTACTTGATTTAGCATTTAAGCAAAAGGTTAC,Distal Intergenic,11,18880668,19012002,131335,2,Meis1-203,137554,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,88,17268,ENSMUSG00000020160,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
6618,cg19901038,0.0000751,0.0000189,3.96973623,0.0000895,gain,ns,-0.0000722,0.0000321,-2.248426578,0.025251251,neg,ns,0.020026605,0.009413833,2.127359322,0.03417937,pos,ns,1.466235952,-0.00065198,0.000323741,-2.013895293,0.044884196,neg,ns,0.372571718,Gm12129,Gm12129_Intergenic_upstream,11,37831161,37831210,37831161,37831162,50,-,CGCTAATGGTAGAACCTACTGCTTAAGTAAATGAACATCCTTACCCCTGC,Distal Intergenic,11,38219069,38220215,1147,1,Gm12129-201,-387908,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,11,276941,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7661,cg19498246,0.000144609,0.0000216,6.699277056,9.87E-11,gain,yes,-0.0000824,0.0000367,-2.248040225,0.025276159,neg,ns,0.035744897,0.010743429,3.327140424,0.000982998,pos,ns,3.007447483,-0.000817842,0.000369466,-2.213580519,0.027585417,neg,ns,0.505811718,Zbtb20,Zbtb20_Exon,16,43610559,43610608,43610559,43610560,50,-,CGCCAGACAGAAACCCTCACCAGCAACCTGAGGATGCCTCTGACCTTGAC,"Exon (Zbtb20-204/Zbtb20, exon 14 of 15)",16,42907652,43642602,734951,1,Zbtb20-204,702907,Zbtb20-204;Zbtb20-215;Zbtb20-201;Zbtb20-203;Zbtb20-219;Zbtb20-216;Zbtb20-220;Zbtb20-202;Zbtb20-205,Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,17,98,56490,ENSMUSG00000022708,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16218,cg17285630,0.0000311,0.0000117,2.657916673,0.008270283,gain,ns,0.0000447,0.0000199,2.247729889,0.025296181,pos,ns,0.018020919,0.005831653,3.090190478,0.002181684,pos,ns,2.661208151,-0.000406463,0.00020055,-2.026739349,0.043544769,neg,ns,0.280048253,Lhx1,Lhx1_Intergenic_upstream,11,84605045,84605094,84605045,84605046,50,+,CGCTCTGGGAGCCCTGACAGCCCGTTTAACAAGGTGTCCAACATCCCATT,Distal Intergenic,11,84518284,84525535,7252,2,Lhx1-201,-79510,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,20,23,16869,ENSMUSG00000018698,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5609,cg05093280,0.00000247,0.00000701,0.352538931,0.72467369,gain,ns,-0.0000268,0.0000119,-2.247451499,0.025314154,neg,ns,-0.005438104,0.003489025,-1.558631534,0.120103893,neg,ns,0.920442915,0.0000603,0.000119987,0.502342079,0.615783553,pos,ns,0.818868963,Pbx3,Pbx3_Intron,2,34355160,34355209,34355208,34355209,50,+,TTAATGAGAAACTGAACTCCAGAACTCTATTAATTTATGTCTTCCTGTCG,"Intron (Pbx3-202/Pbx3, intron 2 of 7)",2,34171457,34372038,200582,2,Pbx3-202,16829,Pbx3-202;Pbx3-201;Pbx3-206;Pbx3-207;Pbx3-209;Pbx3-204;Pbx3-205;Pbx3-203,Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,82,18516,ENSMUSG00000038718,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18365,cg27582648,0.00000866,0.00000323,2.677467774,0.007813196,gain,ns,0.0000123,0.00000549,2.247213906,0.025329502,pos,ns,0.000223481,0.001609145,0.138881927,0.889633629,pos,ns,0.050788809,0.0000543,0.0000553,0.981637901,0.327043748,pos,ns,0.038049692,Otp,Otp_Promoter,13,94873057,94873106,94873105,94873106,50,+,GTTATTACTCTGATGTGTCTTCACATTAACTATTACACATTCATTTATCG,Promoter (2-3kb),13,94875602,94885130,9529,1,Otp-201,-2496,Otp-201,Otp,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,27,34,18420,ENSMUSG00000021685,conserved gene and region,13,94873105,94873237,133,*,133,9,0.563909774,0.869912791,0.067669173,0.00000959,CpGisland,TRUE,U13,Hc-P
2542,cg20442942,-0.0000218,0.00000595,-3.666262739,0.000289505,loss,ns,0.0000227,0.0000101,2.247117515,0.025335731,pos,ns,-0.001564411,0.002959521,-0.528602776,0.59745927,neg,ns,0.223691696,0.0000948,0.000101778,0.931645458,0.352244766,pos,ns,0.861889563,Pkhd1,Pkhd1_Intron,1,20428630,20428679,20428678,20428679,50,+,GGAAAATCAATTTGGCTGGCAAACGAGAGCCCCCAAGAGCTTAGTCCACG,"Intron (Pkhd1-201/Pkhd1, intron 36 of 66)",1,20057779,20618064,560286,2,Pkhd1-201,189385,Pkhd1-201,Pkhd1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,25,241035,ENSMUSG00000043760,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3570,cg26965214,-0.0000219,0.00000652,-3.350985165,0.000904856,loss,ns,0.0000249,0.0000111,2.246954449,0.025346272,pos,ns,0.00133191,0.003247437,0.410141893,0.681985163,pos,ns,0.166225073,0.0000155,0.000111679,0.139111445,0.889452413,pos,ns,0.155860991,Iqca1l,Iqca1l_Intron,5,24551162,24551211,24551210,24551211,50,+,CCCAAATGTATTTTAAATATCACTCTGCGCAGAGACAATTACTGAAAACG,"Intron (Iqca1l-201/Iqca1l, intron 5 of 18)",5,24543432,24555410,11979,2,Iqca1l-201,4199,Iqca1l-201;Iqca1l-205;Iqca1l-204;Iqca1l-203;Iqca1l-202,Iqca1l;Iqca1l;Iqca1l;Iqca1l;Iqca1l,0;0;0;4258;5598,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,4,231045,ENSMUSG00000038199,conserved gene and region,5,24550952,24551241,290,*,290,17,0.582758621,0.703481735,0.05862069,1.75E-09,CpGisland,TRUE,U13,Hc-P
1839,cg17347386,-0.000012,0.00000343,-3.492725309,0.00054765,loss,ns,0.0000131,0.00000583,2.246887286,0.025350614,pos,ns,0.00236375,0.001706662,1.385013582,0.167044195,pos,ns,0.777168612,-0.000134762,0.0000587,-2.296081702,0.022338169,neg,ns,0.921553261,Gli3,Gli3_Intron,13,15543623,15543672,15543671,15543672,50,-,AATGCTTATCTTATATCCAGACCTTGAACATAAAAGGCATTTTATACCCG,"Intron (Gli3-202/Gli3, intron 2 of 11)",13,15463235,15715091,251857,1,Gli3-202,80388,Gli3-202;Gli3-204;Gli3-203;Gli3-201,Gli3;Gli3;Gli3;Gli3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,19,21,14634,ENSMUSG00000021318,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4528,cg02487734,0.000137324,0.0000155,8.841833554,7.24E-17,gain,yes,-0.0000593,0.0000264,-2.246673262,0.025364457,neg,ns,0.007917911,0.007730046,1.024303274,0.30649068,pos,ns,0.513582727,0.000580905,0.000265836,2.185202251,0.02962231,pos,ns,0.501959736,Mnx1,Mnx1_Intergenic_downstream,5,29471384,29471433,29471432,29471433,50,+,CTGTGACAAGAACGAATTGATCATTAAATTTATTAGCGAGATAAATTCCG,Downstream (1-2kb),5,29473034,29478470,5437,2,Mnx1-202,7037,Mnx1-202;Mnx1-201,Mnx1;Mnx1,7037;7037,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,1,8,15285,ENSMUSG00000001566,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
19047,cg11712315,0.000233608,0.0000146,16.05067807,1.28E-42,gain,yes,-0.0000556,0.0000247,-2.246667581,0.025364824,neg,ns,-0.006874734,0.00724388,-0.949040358,0.343339341,neg,ns,0.464276431,0.000287861,0.000249116,1.155526477,0.248764733,pos,ns,0.36873669,Cdk12,Cdk12_Intergenic_downstream,11,98284388,98284437,98284436,98284437,50,+,TCCTTGAGCTCTCTGTGGAGCAATCTCAGAGAGCAGTAAGGTGTGACGCG,Distal Intergenic,11,98263502,98268011,4510,1,Cdk12-204,20886,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,25,69131,ENSMUSG00000003119,conserved gene but different region,11,98284434,98284521,88,*,88,9,0.647727273,1.012787724,0.102272727,0.000000303,CpGisland,TRUE,U11,Tr-P
26807,cg12530467,0.0000204,0.00000438,4.658159458,0.00000474,gain,ns,-0.0000167,0.00000744,-2.246621453,0.025367808,neg,ns,-0.003098268,0.002178659,-1.422098732,0.156002939,neg,ns,0.80686722,-0.0000675,0.0000749,-0.900647055,0.368475147,neg,ns,0.882332713,Zzz3,Zzz3_Exon,3,152427349,152427398,152427349,152427350,50,-,CGTGTTACAAGATCAACAGTGGGGTTAAACGGCTTGGATGAATCTTTTTG,"Exon (Zzz3-206/Zzz3, exon 4 of 4)",3,152395473,152459474,64002,1,Zzz3-204,31876,Zzz3-204;Zzz3-206;Zzz3-202;Zzz3-207;Zzz3-208;Zzz3-210;Zzz3-201;Zzz3-203,Zzz3;Zzz3;Zzz3;Zzz3;Zzz3;Zzz3;Zzz3;Zzz3,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,7,108946,ENSMUSG00000039068,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6868,cg13001306,0.00000435,0.0000113,0.384951539,0.700537294,gain,ns,0.0000431,0.0000192,2.246573873,0.025370887,pos,ns,0.003332699,0.005620036,0.593003068,0.553611456,pos,ns,0.256794932,0.00022113,0.000193273,1.144136182,0.253449834,pos,ns,0.814656564,Gm19563,Gm19563_Intergenic_downstream,12,39048092,39048141,39048140,39048141,50,-,CATTTACAAGTGAAGACATACAGAACCTTCTTTTGTTTCCTGGATAATCG,Distal Intergenic,12,38998654,38998923,270,1,Gm19563-201,49487,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,2,100503118,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4990,cg20422807,-0.00000118,0.000000871,-1.353310397,0.176942485,loss,ns,0.00000332,0.00000148,2.24650039,0.025375642,pos,ns,0.001272051,0.00043359,2.933762724,0.003598633,pos,ns,2.443862445,-0.0000348,0.0000149,-2.332572301,0.020310381,neg,ns,0.975982443,Dlg1,Dlg1_Exon,16,31665661,31665710,31665661,31665662,50,+,CGGGTTATTAACATATTTCAGAGCAACCTCTTTCAGGCTTTAATAGGTGG,"Exon (Dlg1-206/Dlg1, exon 3 of 26)",16,31663443,31875129,211687,1,Dlg1-206,2218,Dlg1-206;Dlg1-205;Dlg1-203;Dlg1-209;Dlg1-202;Dlg1-201,Dlg1;Dlg1;Dlg1;Dlg1;Dlg1;Dlg1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,8,13383,ENSMUSG00000022770,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23246,cg00176482,0.00000772,0.00000425,1.816741499,0.070222289,gain,ns,-0.0000162,0.00000722,-2.246047216,0.025404985,neg,ns,-0.002168606,0.002114137,-1.025764377,0.305802398,neg,ns,0.514559113,0.0000193,0.0000727,0.265939653,0.790462467,pos,ns,0.926614882,Eri3,Eri3_Exon,4,117593115,117593164,117593115,117593116,50,+,CGTCAAGTCAATTTTTGTCACCTGTGGAGACTGGGACTTAAAAGTCATGT,"Exon (Eri3-201/Eri3, exon 6 of 9)",4,117550365,117674297,123933,1,Eri3-201,42750,Eri3-201;Eri3-206;Eri3-202;Eri3-204,Eri3;Eri3;Eri3;Eri3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,97,140546,ENSMUSG00000033423,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10008,cg10097082,0.00000606,0.0000174,0.348947101,0.727365913,gain,ns,0.0000663,0.0000295,2.245902563,0.025414357,pos,ns,0.005231473,0.008645215,0.605129283,0.545535808,pos,ns,0.263176738,0.000091,0.000297308,0.305957694,0.759842222,pos,ns,0.72689555,Skap2,Skap2_Intergenic_downstream,6,51848550,51848599,51848598,51848599,50,+,GCTAAGTAATTTATTGCACTGCAGTCTCATAAAGCAGAGGATTTATATCG,Distal Intergenic,6,51859104,51871929,12826,2,Skap2-207,23330,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,19,54353,ENSMUSG00000059182,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1156,cg16774573,-0.00000582,0.00000442,-1.317146932,0.188762129,loss,ns,0.0000169,0.00000751,2.245811534,0.025420257,pos,ns,0.009484097,0.002199743,4.311456189,0.0000218,pos,ns,4.661202568,-0.000289807,0.0000756,-3.830945076,0.00015452,neg,ns,0.873632089,Cables1,Cables1_Exon,18,11905935,11905984,11905983,11905984,50,+,ATCAGTGGCAGAAGATCCTTCTGTAGTATATTTTCAGTGCTGCCGTATCG,"Exon (Cables1-202/Cables1, exon 4 of 10)",18,11839220,11945626,106407,1,Cables1-202,66715,Cables1-202;Cables1-201;Cables1-203,Cables1;Cables1;Cables1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,63955,ENSMUSG00000040957,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20896,cg12798259,0.000152731,0.000014,10.89389871,1.30E-23,gain,yes,-0.0000535,0.0000238,-2.24569737,0.025427657,neg,ns,-0.001444271,0.006977815,-0.206980399,0.836161055,neg,ns,0.077710064,0.00045966,0.000239966,1.915518701,0.056346181,pos,ns,0.43082243,Pax6,Pax6_Exon,2,105684928,105684977,105684928,105684929,50,-,CGAGACTGGCTCCATCAGACCCAGGGCAATCGGTGGTAGTAAACCGAGAG,"Exon (Pax6-206/Pax6, exon 6 of 13)",2,105668900,105697364,28465,1,Pax6-206,16028,Pax6-206;Pax6-207;Pax6-210;Pax6-214;Pax6-208;Pax6-202;Pax6-205;Pax6-225;Pax6-204;Pax6-201;Pax6-203;Pax6-224;Pax6-219;Pax6-221;Pax6-213;Pax6-211;Pax6-222;Pax6-212;Pax6-215;Pax6-223;Pax6-209;Pax6-216,Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,31,78,18508,ENSMUSG00000027168,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
21065,cg00472926,0.0000118,0.0000183,0.644688727,0.519605698,gain,ns,0.0000697,0.0000311,2.245682671,0.02542861,pos,ns,0.017996421,0.009098296,1.977998989,0.048814032,pos,ns,1.311455318,-0.000586386,0.00031289,-1.874097639,0.06185739,neg,ns,0.428433116,Vrk1,Vrk1_Intergenic_downstream,12,106227167,106227216,106227215,106227216,50,-,ATTAAACCACCCCTTTAAGAATATTTAGATCTGGTCTGCCAAGCGGAACG,Distal Intergenic,12,106030717,106075409,44693,1,Vrk1-204,196499,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,29,37,22367,ENSMUSG00000021115,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7608,cg03921247,-0.00000154,0.00000265,-0.583562006,0.559939358,loss,ns,0.0000101,0.0000045,2.245631614,0.025431921,pos,ns,0.004282611,0.001316964,3.251880516,0.001272737,pos,ns,2.895261258,-0.000118817,0.0000453,-2.623443187,0.009135129,neg,ns,0.942537558,Ranbp9,Ranbp9_Exon,13,43414010,43414059,43414010,43414011,50,+,CGTGGTCATGTTTAGAGCTACCATTTAGGAAACCATTGGATGAAGTTTCT,"Exon (Ranbp9-201/Ranbp9, exon 11 of 14)",13,43402675,43481282,78608,2,Ranbp9-201,67223,Gm47597-201;Ranbp9-201;Ranbp9-205;Ranbp9-208,Gm47597;Ranbp9;Ranbp9;Ranbp9,-3475;0;-1526;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,56705,ENSMUSG00000038546,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7070,cg15403466,0.0000779,0.00000709,10.98794073,6.13E-24,gain,yes,-0.000027,0.000012,-2.245461617,0.025442946,neg,ns,0.007504696,0.003528119,2.127109674,0.034200275,pos,ns,1.465970405,-0.000135925,0.000121332,-1.120274949,0.26346377,neg,ns,0.152786285,Tfap2a,Tfap2a_fiveUTR,13,40738283,40738332,40738331,40738332,50,-,ACATCTCACCTGGTCATAAAGAGCTGGGTTGCTACCTGCCGACGCATGCG,Promoter (<=1kb),13,40716605,40738376,21772,2,Tfap2a-203,44,Tfap2a-202;Tfap2a-203;Tfap2a-208;Tfap2a-206;Tfap2a-204,Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,6,57,21418,ENSMUSG00000021359,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
1481,cg07670524,-0.000108855,0.0000132,-8.221191499,5.58E-15,loss,yes,0.0000505,0.0000225,2.245418823,0.025445722,pos,ns,-0.008329017,0.006590087,-1.263870592,0.207226026,neg,ns,0.683555702,0.0000525,0.000226633,0.231859943,0.816799775,pos,ns,0.22056786,Ncoa2,Ncoa2_Intron,1,13162553,13162602,13162601,13162602,50,+,AACCCCAACTTCCTTCCTCAGGAAGTGAATCACATTAGCTGATATACACG,"Intron (Ncoa2-203/Ncoa2, intron 12 of 21)",1,13139105,13372439,233335,2,Ncoa2-203,209837,Ncoa2-203;Ncoa2-202;Ncoa2-201;Ncoa2-210;Ncoa2-207,Ncoa2;Ncoa2;Ncoa2;Ncoa2;Ncoa2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,6,17978,ENSMUSG00000005886,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18432,cg02298541,-0.00000796,0.00000725,-1.098225713,0.272958186,loss,ns,0.0000276,0.0000123,2.245361733,0.025449426,pos,ns,0.007091609,0.003606214,1.966497388,0.050133052,pos,ns,1.299875859,-0.000255571,0.000124017,-2.060768543,0.040159072,neg,ns,0.873375702,St8sia4,St8sia4_Exon,1,95627696,95627745,95627696,95627697,50,+,CGAAAGCCTCCAAATGCTCTTTGTACAACTGATGGATTCATGGTAATAAA,"Exon (St8sia4-201/St8sia4, exon 4 of 5)",1,95587682,95667571,79890,2,St8sia4-201,39826,St8sia4-201;St8sia4-204,St8sia4;St8sia4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,20452,ENSMUSG00000040710,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19943,cg13068696,-0.00000166,0.00000212,-0.782824041,0.434328042,loss,ns,0.0000081,0.00000361,2.245314833,0.025452469,pos,ns,0.003820913,0.001057041,3.614724943,0.000350754,pos,ns,3.454997391,-0.0000959,0.0000364,-2.63717498,0.008781357,neg,ns,0.941614583,Clpb,Clpb_Intron,7,101714033,101714082,101714033,101714034,50,-,CGATGATTATCTCTCACTGAGACATTTTTTACAGATGACGGTCGAGCTGT,"Intron (Clpb-205/Clpb, intron 4 of 5)",7,101663633,101722922,59290,1,Clpb-205,50400,Clpb-205;Clpb-201;Clpb-202;Clpb-211;Clpb-208;Clpb-207;Clpb-210,Clpb;Clpb;Clpb;Clpb;Clpb;Clpb;Clpb,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,21,21,20480,ENSMUSG00000001829,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3229,cg05927124,-0.00000377,0.00000236,-1.598957301,0.110848768,loss,ns,0.000009,0.00000401,2.245187036,0.025460762,pos,ns,0.002472154,0.001174713,2.104474386,0.03614192,pos,ns,1.441988776,-0.0000871,0.0000404,-2.155108945,0.031923034,neg,ns,0.9523547,Xpo1,Xpo1_Exon,11,23280395,23280444,23280395,23280396,50,-,CGAAATGTCTCTCTGAAGTGCCTCACTGAGATTGCTGGTGTGAGTGTAAG,"Exon (Xpo1-201/Xpo1, exon 11 of 26)",11,23256041,23297597,41557,1,Xpo1-201,24354,Xpo1-201;Xpo1-204;Xpo1-203;Xpo1-206;Xpo1-202;Xpo1-207,Xpo1;Xpo1;Xpo1;Xpo1;Xpo1;Xpo1,0;0;0;0;0;-4200,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,14,103573,ENSMUSG00000020290,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22205,cg17972351,-0.00000753,0.00000493,-1.527523947,0.127650426,loss,ns,0.0000188,0.00000838,2.245176952,0.025461417,pos,ns,0.004491797,0.002455099,1.829578768,0.068273266,pos,ns,1.165749321,-0.000156688,0.0000844,-1.85581665,0.064428584,neg,ns,0.90724683,Spata6,Spata6_Exon,4,111779216,111779265,111779216,111779217,50,-,CGGCGGCTGGCCCATTTAAATCTGGGACCCTATGAGTTCAAAAAAGAAAC,"Exon (Spata6-201/Spata6, exon 7 of 13)",4,111719984,111829142,109159,1,Spata6-201,59232,Spata6-201;Spata6-204;Spata6-213;Spata6-214;Spata6-208;Spata6-205;Spata6-203;Spata6-212;Spata6-211;Spata6-206,Spata6;Spata6;Spata6;Spata6;Spata6;Spata6;Spata6;Spata6;Spata6;Spata6,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,Exon,4,5,67946,ENSMUSG00000034401,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27503,cg19716713,0.000074,0.0000118,6.272693342,1.19E-09,gain,yes,0.000045,0.00002,2.24514614,0.025463417,pos,ns,0.028360607,0.005867945,4.83314109,0.00000212,pos,ns,5.674079836,-0.000746072,0.000201798,-3.697119209,0.000257811,neg,ns,0.485971791,Msl3,Msl3_fiveUTR,X,168673773,168673822,168673821,168673822,50,-,GCACAGCACTTTCTCCCCTGAGTGGAATTTAAATTTCATGCCCTCGCTCG,Promoter (<=1kb),20,168654117,168673898,19782,2,Msl3-201,76,Msl3-201;Msl3-202;Msl3-203,Msl3;Msl3;Msl3,0;0;-1254,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,2,17692,ENSMUSG00000031358,conserved gene and region,X,168673817,168674215,399,*,399,47,0.744360902,0.851557533,0.117794486,1.28E-39,CpGisland,TRUE,U1,Pr-A
12685,cg21083249,0.0000191,0.00000839,2.278939401,0.023350359,gain,ns,0.000032,0.0000143,2.244957511,0.025475663,pos,ns,0.01070433,0.004177901,2.562130738,0.010875644,pos,ns,1.963545024,-0.000256602,0.000143678,-1.785955959,0.075083719,neg,ns,0.539879503,Unc80,Unc80_Exon,1,66606586,66606635,66606586,66606587,50,+,CGGCAGGACTCAGAGTCTGAGGCTGAGGAGCTGCAGCTGTCCCAGAGCAG,"Exon (Unc80-201/Unc80, exon 27 of 65)",1,66468367,66699148,230782,1,Unc80-201,138219,Unc80-201;Unc80-206,Unc80;Unc80,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,9,329178,ENSMUSG00000055567,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17821,cg01385439,-0.0000116,0.00000585,-1.97780664,0.048835848,loss,ns,0.0000223,0.00000994,2.244766601,0.025488063,pos,ns,0.011737195,0.00291325,4.028901021,0.0000706,pos,ns,4.151485257,-0.000457748,0.000100186,-4.568962644,0.00000708,neg,ns,0.192529932,Irx3,Irx3_Exon,8,91872552,91872601,91872600,91872601,50,-,CTTTACCATTAATTTAACTTTCAGATGCTGAAATTGGTCACACAGCCTCG,"Exon (Gm28511-201/Gm28511-201, exon 2 of 2)",8,91798525,91802067,3543,2,Irx3-202,-70534,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,16,36,16373,ENSMUSG00000031734,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13181,cg08449899,0.0000383,0.00000857,4.468438985,0.0000111,gain,ns,0.0000327,0.0000146,2.244734504,0.025490149,pos,ns,0.003460926,0.004265085,0.811455173,0.417726922,pos,ns,0.379107534,-0.000248776,0.000146676,-1.696095887,0.09087164,neg,ns,0.619678509,Tcf4,Tcf4_Intron,18,69675213,69675262,69675213,69675214,50,-,CGAATGCCAAATTGAAATTCCTGTAGGATTTCCGATAGCAATGGGGGAAT,"Intron (Tcf4-201/Tcf4, intron 16 of 20)",18,69344146,69684343,340198,1,Tcf4-201,331067,Tcf4-201;Tcf4-207;Tcf4-240;Tcf4-254;Tcf4-246;Tcf4-206;Tcf4-202;Tcf4-257;Tcf4-248;Tcf4-205;Tcf4-253;Tcf4-238;Tcf4-249;Tcf4-250;Tcf4-226;Tcf4-230;Tcf4-234;Tcf4-258;Tcf4-252;Tcf4-243;Tcf4-204;Tcf4-222;Tcf4-255;Tcf4-203;Tcf4-251;Tcf4-214,Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,42,66,21413,ENSMUSG00000053477,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7466,cg06569141,0.000131206,0.0000112,11.74214758,1.38E-26,gain,yes,-0.0000426,0.000019,-2.244621602,0.025497485,neg,ns,-0.014165446,0.005561377,-2.547111338,0.011344812,neg,ns,1.945202691,0.000708429,0.000191255,3.704100972,0.000251108,pos,ns,0.720518075,Pou3f3,Pou3f3_threeUTR,1,42700006,42700055,42700054,42700055,50,+,ATGAACTGCTGCAAAACGGTAATTTATTTTTCCCCAGATCTTGTATTACG,3' UTR,1,42694925,42703176,8252,1,Pou3f3-202,5081,Pou3f3-202;Pou3f3-201,Pou3f3;Pou3f3,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,5,37,18993,ENSMUSG00000045515,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
6544,cg13514522,0.00000378,0.00000407,0.927793452,0.354236521,gain,ns,0.0000155,0.00000692,2.244180198,0.025526184,pos,ns,0.002232937,0.002026752,1.101731867,0.27143291,pos,ns,0.566337497,-0.00000528,0.0000697,-0.075817811,0.939612951,neg,ns,0.526199659,Zfp536,Zfp536_Intron,7,37651756,37651805,37651804,37651805,50,-,TGGTGAGTAGGTTTGTCTGCTGCCCTTGTGTTTCTAGGACATTGGACTCG,"Intron (Zfp536-202/Zfp536, intron 3 of 6)",7,37479104,37769624,290521,2,Zfp536-202,117819,Zfp536-202;Zfp536-201;Zfp536-203;Zfp536-206;Zfp536-209;Zfp536-208,Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,73,112,243937,ENSMUSG00000043456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10331,cg26352402,0.000107478,0.000018,5.972303104,6.41E-09,gain,yes,-0.0000686,0.0000306,-2.244095342,0.025531705,neg,ns,0.020495823,0.008956837,2.288288117,0.022793499,pos,ns,1.642188992,-0.000561449,0.000308025,-1.822740618,0.069305834,neg,ns,0.478323575,Mstn,Mstn_Exon,1,53064055,53064104,53064055,53064056,50,-,CGGTACAAGGTATACTGGAATCCGATCTCTGAAACTTGACATGAACCCAG,"Exon (Mstn-201/Mstn, exon 2 of 3)",1,53061640,53068079,6440,1,Mstn-201,2415,Mstn-201;Mstn-202,Mstn;Mstn,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,17700,ENSMUSG00000026100,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7777,cg06901478,0.0000213,0.00000353,6.04300503,4.34E-09,gain,yes,-0.0000134,0.00000599,-2.243854227,0.025547397,neg,ns,-0.002722333,0.001754458,-1.551666307,0.121762367,neg,ns,0.914486917,0.000062,0.0000603,1.028081696,0.304712892,pos,ns,0.831315048,Hinfp,Hinfp_Exon,9,44298890,44298939,44298890,44298891,50,-,CGACGGATGTGATCTAAGAACTTGGTATTGTTGGCAAACATGCCCCCACA,"Exon (Hinfp-205/Hinfp, exon 5 of 10)",9,44292440,44305671,13232,2,Hinfp-205,6732,Hinfp-205;Hinfp-203;Hinfp-201;Hinfp-204;Hinfp-206;Hinfp-207;Hinfp-202;Hinfp-208,Hinfp;Hinfp;Hinfp;Hinfp;Hinfp;Hinfp;Hinfp;Hinfp,0;-850;0;-254;-20;0;6707;6706,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,102423,ENSMUSG00000032119,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19970,cg25799882,-0.0000181,0.00000575,-3.143507732,0.001830907,loss,ns,0.0000219,0.00000977,2.243478387,0.025571873,pos,ns,0.005366336,0.002863277,1.87419361,0.061844121,pos,ns,1.208701581,-0.000212069,0.0000985,-2.153685063,0.032035607,neg,ns,0.905574659,9630041A04Rik,9630041A04Rik_Intron,9,101830527,101830576,101830575,101830576,50,-,TTCTAAATCAAATTCAAGGGTCACTGATTGTTAAGGCAACCATGGGTACG,"Intron (Gm29521-201/Gm29521-201, intron 1 of 3)",9,101861841,101943228,81388,1,9630041A04Rik-204,-31314,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,3,442798,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
62,cg14125174,-0.0000046,0.0000013,-3.53361903,0.000472322,loss,ns,-0.00000496,0.00000221,-2.243406636,0.025576548,neg,ns,-0.000952493,0.000647654,-1.470682829,0.142391184,neg,ns,0.846516898,-0.000033,0.0000223,-1.480805805,0.13967396,neg,ns,0.965810335,Kmt5b,Kmt5b_threeUTR,19,3804437,3804486,3804437,3804438,50,+,CGAACTTTCAGAAATTGAGGAGAACATGCTACTTAGACATGGAGAAAACG,3' UTR,19,3767421,3808829,41409,1,Kmt5b-202,37016,Kmt5b-202;Kmt5b-205;Kmt5b-207;Kmt5b-206;Kmt5b-208;Kmt5b-203;Kmt5b-204;Kmt5b-201;Kmt5b-221;Kmt5b-210;Kmt5b-213;Kmt5b-216;Kmt5b-209;Kmt5b-219;Kmt5b-220;Kmt5b-218;Kmt5b-212,Kmt5b;Kmt5b;Kmt5b;Kmt5b;Kmt5b;Kmt5b;Kmt5b;Kmt5b;Kmt5b;Kmt5b;Kmt5b;Kmt5b;Kmt5b;Kmt5b;Kmt5b;Kmt5b;Kmt5b,0;0;0;0;0;0;0;0;0;0;0;0;12717;0;2364;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,3,225888,ENSMUSG00000045098,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26887,cg27633182,-0.00000228,0.0000023,-0.988332549,0.323760584,loss,ns,0.00000878,0.00000391,2.243356198,0.025579835,pos,ns,0.002472046,0.00114596,2.15718393,0.031759595,pos,ns,1.49812505,-0.0000689,0.0000394,-1.748106881,0.081435489,neg,ns,0.951277397,Prdm16,Prdm16_Intron,4,154456684,154456733,154456684,154456685,50,+,CGGCTAAGAGCCCATGCCAGCAGTAATCAAACGCAAAATCTGCATAAACC,"Intron (Prdm16-201/Prdm16, intron 3 of 16)",4,154316125,154636866,320742,2,Prdm16-201,180133,Prdm16-201;Prdm16-202;Prdm16-203;Prdm16-204;Prdm16-205;Prdm16-206;Prdm16-210;Prdm16-207,Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,32,70673,ENSMUSG00000039410,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9966,cg05736341,0.0000103,0.00000346,2.969417248,0.003216523,gain,ns,-0.0000132,0.00000587,-2.243268681,0.025585539,neg,ns,-0.006514751,0.00172021,-3.787183107,0.000182972,neg,ns,3.737614896,0.000163746,0.0000592,2.767944958,0.005980387,pos,ns,0.887258459,Satb1,Satb1_Intron,17,51761422,51761471,51761470,51761471,50,-,GAATATGCCAAGCGCTGTCACAGATGGCAGGCTCTGACAGTTCCCATCCG,"Intron (Satb1-208/Satb1, intron 9 of 10)",17,51736187,51832672,96486,2,Satb1-208,71201,Satb1-208;Satb1-213;Satb1-204;Satb1-214;Satb1-203;Satb1-211;Satb1-207,Satb1;Satb1;Satb1;Satb1;Satb1;Satb1;Satb1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,28,36,20230,ENSMUSG00000023927,conserved gene and region,17,51761281,51761486,206,*,206,11,0.509708738,0.825801749,0.053398058,0.00000611,CpGisland,TRUE,U15,NS
3277,cg22512644,-0.0000015,0.00000165,-0.907870835,0.364651674,loss,ns,0.00000629,0.0000028,2.243172836,0.025591787,pos,ns,0.002670463,0.000820897,3.253102268,0.001267459,pos,ns,2.897066037,-0.00008,0.0000282,-2.835355598,0.004878317,neg,ns,0.966018453,Usp34,Usp34_Exon,11,23454618,23454667,23454666,23454667,50,-,GCCCTTGAAAAGATGATAGCTTTAGTTGCTCTTTTGGTTGAACAGTCTCG,"Exon (Usp34-208/Usp34, exon 62 of 80)",11,23306895,23490560,183666,1,Usp34-208,147723,Usp34-208;Usp34-205;Usp34-204;Usp34-203;Usp34-206,Usp34;Usp34;Usp34;Usp34;Usp34,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,13,14,17847,ENSMUSG00000056342,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17195,cg15314715,-0.0000186,0.00000448,-4.148294038,0.0000433,loss,ns,-0.0000171,0.00000761,-2.243056011,0.025599405,neg,ns,-0.007986642,0.00223057,-3.58053923,0.00039789,neg,ns,3.400237511,0.000207703,0.0000767,2.707676434,0.007151555,pos,ns,0.893497745,Gm6625,Gm6625_Promoter,8,89153137,89153186,89153185,89153186,50,-,TATCCAAATATTATTAAAACTTTGAACCCTGTCCCCATAAATTATGACCG,Promoter (6-7kb),8,89146787,89147058,272,2,Gm6625-201,-6128,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,7,625801,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15663,cg02929405,-0.0000203,0.00000848,-2.396654879,0.017137571,loss,ns,-0.0000323,0.0000144,-2.242591149,0.025629735,neg,ns,-0.007145593,0.00422253,-1.692253875,0.091602364,neg,ns,1.038093318,-0.000316159,0.000145212,-2.177219446,0.030218209,neg,ns,0.678509899,Nfib,Nfib_Intron,4,82619271,82619320,82619319,82619320,50,+,TGTTATTACTGTATAGCCCTGGCAAGGCTCAAAAGCAAGCAGACTTGACG,"Intron (Nfib-212/Nfib, intron 1 of 1)",4,82498321,82705750,207430,2,Nfib-212,86430,Nfib-212,Nfib,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,66,18028,ENSMUSG00000008575,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26271,cg05039938,-0.00000349,0.00000115,-3.043716838,0.002536875,loss,ns,0.00000437,0.00000195,2.242464611,0.025637997,pos,ns,0.001605809,0.000570929,2.812623238,0.005227418,pos,ns,2.281712779,-0.0000539,0.0000196,-2.744283156,0.006417752,neg,ns,0.965383409,Sspn,Sspn_Intergenic_downstream,6,146001812,146001861,146001860,146001861,50,-,AACAACATTAGCTCATCCAAGCTTGTGGTTTATTTGAAAACGAAATTCCG,Distal Intergenic,6,145953429,145965223,11795,1,Sspn-202,48432,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,16651,ENSMUSG00000030255,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5042,cg27647846,-0.0000257,0.0000107,-2.393717612,0.017272835,loss,ns,0.0000408,0.0000182,2.242408546,0.025641658,pos,ns,-0.000717936,0.005333787,-0.134601507,0.893014298,neg,ns,0.049141587,0.000141104,0.000183428,0.769256914,0.442326519,pos,ns,0.495023187,1700012A03Rik,1700012A03Rik_Intergenic_upstream,6,31948187,31948236,31948187,31948188,50,+,CGGCACAGCCTTGCATTAATTTAGAGCTAATTGTCAGGTAATGAATTCGA,Distal Intergenic,6,32050246,32058921,8676,1,1700012A03Rik-204,-102010,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,2,76382,ENSMUSG00000029766,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10188,cg00928703,0.0000338,0.0000035,9.65214121,1.91E-19,gain,yes,-0.0000133,0.00000595,-2.242345253,0.025645791,neg,ns,-0.0021644,0.001741834,-1.242598799,0.214954815,neg,ns,0.667652822,0.000135087,0.0000599,2.255153027,0.024821016,pos,ns,0.115196718,Hoxa7,Hoxa7_fiveUTR,6,52217472,52217521,52217520,52217521,50,+,GATAACATTACACCCCCAGATTTACACCAAACCCCATTTTCTTTTGGACG,Promoter (<=1kb),6,52214498,52217505,3008,2,Hoxa7-201,0,Gm28308-201;Hoxa3-201;Hoxa3-203;Hoxa7-205;Hoxa7-201;Hoxa7-202;Hoxa7-204;Hoxa7-203,Gm28308;Hoxa3;Hoxa3;Hoxa7;Hoxa7;Hoxa7;Hoxa7;Hoxa7,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,9,10,15404,ENSMUSG00000038236,conserved gene and region,6,52217520,52217758,239,*,239,24,0.728033473,0.781045752,0.10041841,1.22E-18,CpGisland,TRUE,U3,Pr-B
23726,cg03696101,0.0000966,0.00000938,10.29861326,1.38E-21,gain,yes,-0.0000357,0.0000159,-2.242278129,0.025650176,neg,ns,0.007301251,0.00467079,1.563172777,0.119032195,pos,ns,0.924335558,-0.000465983,0.000160628,-2.901003061,0.003985834,neg,ns,0.426603614,Rbm19,Rbm19_Intergenic_downstream,5,120231950,120231999,120231950,120231951,50,+,CGGCTCCGAGATGTACTATAAATGATGTTTGATTAGAATTTAAATCATTT,Distal Intergenic,5,120175725,120197969,22245,1,Rbm19-210,56225,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,12,13,74111,ENSMUSG00000029594,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
2187,cg11748993,-0.00000247,0.00000207,-1.190364726,0.234813826,loss,ns,0.00000789,0.00000352,2.241785821,0.025682354,pos,ns,0.002304979,0.001031742,2.234065881,0.026191542,pos,ns,1.581838937,-0.0000671,0.0000355,-1.890753865,0.059589571,neg,ns,0.956884557,Dnajc1,Dnajc1_threeUTR,2,18308887,18308936,18308887,18308888,50,+,CGCCTGTAGTAGAATACAGGCTGTCGCCAATCTGGAAGTCCATTGATCAG,3' UTR,2,18206333,18392811,186479,2,Dnajc1-202,83875,Dnajc1-202;Dnajc1-209;Dnajc1-205;Dnajc1-201;Dnajc1-210;Dnajc1-207;Dnajc1-206;Dnajc1-204,Dnajc1;Dnajc1;Dnajc1;Dnajc1;Dnajc1;Dnajc1;Dnajc1;Dnajc1,0;0;0;0;0;-1871;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,5,13418,ENSMUSG00000026740,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7683,cg20194417,-0.000000111,0.00000238,-0.046691726,0.962788989,loss,ns,0.00000908,0.00000405,2.241538142,0.025698555,pos,ns,0.000450215,0.001186382,0.379485208,0.704587407,pos,ns,0.152065123,-0.0000427,0.0000408,-1.045696492,0.296515861,neg,ns,0.945385891,Npr2,Npr2_Exon,4,43643335,43643384,43643335,43643336,50,-,CGGGGATCCAGTTACGGCTCGCTCATGACAGCCCATGGGAAATACCAGAT,"Exon (Npr2-201/Npr2, exon 9 of 22)",4,43631935,43651244,19310,1,Npr2-201,11400,Npr2-201;Npr2-202;Npr2-204;Npr2-208;Npr2-203;Npr2-205;Npr2-209;Npr2-206;Npr2-207;Npr2-210,Npr2;Npr2;Npr2;Npr2;Npr2;Npr2;Npr2;Npr2;Npr2;Npr2,0;0;0;2080;0;0;0;0;-3813;-4621,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,Exon,10,10,230103,ENSMUSG00000028469,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27891,cg26494640,-0.0000264,0.0000131,-2.020687121,0.044171631,loss,ns,-0.0000498,0.0000222,-2.241483793,0.025702112,neg,ns,0.035438722,0.006506394,5.446753001,0.000000105,pos,ns,6.980430476,-0.000501865,0.000223754,-2.242930104,0.025607616,neg,ns,0.752563135,Prox1,Prox1_Intron,1,190148563,190148612,190148611,190148612,50,-,ATTATCTGATCTTCTGGTTGCCGATTTCAATAGAACTTAAACCCATTACG,"Intron (Prox1-202/Prox1, intron 3 of 4)",1,190118035,190170714,52680,2,Prox1-202,22102,Prox1-202;Prox1-201;Prox1-203,Prox1;Prox1;Prox1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,59,19130,ENSMUSG00000010175,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8282,cg23802020,0.000000371,0.00000311,0.119497047,0.904958982,gain,ns,-0.0000118,0.00000528,-2.241328975,0.025712245,neg,ns,0.004424772,0.001546232,2.861648076,0.004501062,pos,ns,2.346684991,-0.0000886,0.0000532,-1.666597832,0.096604393,neg,ns,0.928606699,Ube4a,Ube4a_threeUTR,9,44942769,44942818,44942769,44942770,50,+,CGAAGATTGTCAGCAGCAGGGCTAGAACTTTGCTGAGCATCCCGCCAGGC,3' UTR,9,44923127,44965578,42452,2,Ube4a-201,22760,Ube4a-201;Ube4a-202;Ube4a-205;Ube4a-206;Ube4a-204,Ube4a;Ube4a;Ube4a;Ube4a;Ube4a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,4,140630,ENSMUSG00000059890,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
304,cg23633223,-0.00000372,0.00000218,-1.711140818,0.088055422,loss,ns,-0.00000829,0.0000037,-2.241140742,0.02572457,neg,ns,-0.000834531,0.001083203,-0.770429301,0.441632015,neg,ns,0.354939451,-0.000029,0.0000373,-0.777156599,0.437659016,neg,ns,0.962358836,Ewsr1,Ewsr1_Exon,11,5079488,5079537,5079536,5079537,50,-,CAGGCTTATTGAAGCCACCTCGCTCTCCAGCGCTGCTGGGGGGATAAACG,Promoter (<=1kb),11,5071107,5079528,8422,2,Ewsr1-209,0,Ewsr1-203;Ewsr1-202;Ewsr1-205;Ewsr1-209;Ewsr1-212;Ewsr1-208;Ewsr1-211;Ewsr1-204;Ewsr1-210,Ewsr1;Ewsr1;Ewsr1;Ewsr1;Ewsr1;Ewsr1;Ewsr1;Ewsr1;Ewsr1,0;0;0;0;-967;0;0;0;6499,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,8,14030,ENSMUSG00000009079,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3858,cg20543544,-0.000173021,0.0000155,-11.13893462,1.83E-24,loss,yes,0.0000591,0.0000264,2.240802845,0.025746707,pos,ns,-0.001965453,0.007730946,-0.254231876,0.799484976,neg,ns,0.097189693,0.000254733,0.000265867,0.958122914,0.338747414,pos,ns,0.741952847,Zmiz1,Zmiz1_Intron,14,25608325,25608374,25608373,25608374,50,+,CATTGTGGGTAGCGCCGTGTGCTGCATGGTGTCAGCCCCAGGCTTGGCCG,"Intron (Zmiz1-208/Zmiz1, intron 6 of 23)",14,25459224,25666743,207520,1,Zmiz1-208,149101,Zmiz1-208;Zmiz1-201;Zmiz1-202;Zmiz1-203;Zmiz1-204,Zmiz1;Zmiz1;Zmiz1;Zmiz1;Zmiz1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,15,328365,ENSMUSG00000007817,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
8512,cg19920160,-0.0000157,0.00000292,-5.376308183,0.00000015,loss,yes,0.0000111,0.00000496,2.240801816,0.025746774,pos,ns,-0.002253337,0.001452281,-1.551585132,0.121781801,neg,ns,0.914417606,-0.00000524,0.0000499,-0.104906196,0.916518085,neg,ns,0.937286863,Qdpr,Qdpr_Intron,5,45267140,45267189,45267140,45267141,50,-,CGTTGCCTTGGTAACCACAACTTGGTGACCTCGTTATTTCAACCTAATCC,"Intron (D5Ertd615e-202/D5Ertd615e-202, intron 4 of 5)",5,45434145,45443596,9452,2,Qdpr-210,176456,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,110391,ENSMUSG00000015806,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
618,cg07936137,0.0000095,0.00000943,1.007515953,0.314472653,gain,ns,-0.0000359,0.000016,-2.240517616,0.025765406,neg,ns,0.035358062,0.004694017,7.532581312,5.49E-13,pos,yes,12.26058647,-0.001231469,0.000161427,-7.628652308,2.94E-13,neg,yes,0.636971247,Mark2,Mark2_Exon,19,7283149,7283198,7283149,7283150,50,-,CGTTGTTACTCTGAGTCTTCTTAGAGTAAGAATTAGAGGTGGGAATGGCA,Promoter (<=1kb),19,7277445,7283178,5734,2,Mark2-208,0,Mark2-202;Mark2-206;Mark2-201;Mark2-221;Mark2-209;Mark2-203;Mark2-211;Mark2-207;Mark2-215;Mark2-212;Mark2-208;Mark2-219;Mark2-204;Mark2-205;Mark2-217;Mark2-214;Mark2-220;Mark2-216,Mark2;Mark2;Mark2;Mark2;Mark2;Mark2;Mark2;Mark2;Mark2;Mark2;Mark2;Mark2;Mark2;Mark2;Mark2;Mark2;Mark2;Mark2,0;0;0;0;0;0;0;0;0;0;0;0;-1208;-39;0;4165;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,10,13728,ENSMUSG00000024969,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4047,cg02032681,-0.000108253,0.0000175,-6.171687123,2.11E-09,loss,yes,0.0000668,0.0000298,2.240412824,0.025772279,pos,ns,0.036609245,0.008729959,4.193518423,0.0000359,pos,ns,4.445078119,-0.001891134,0.000300223,-6.299105756,1.02E-09,neg,yes,0.769451263,Gm45647,Gm45647_Intergenic_upstream,8,26656879,26656928,26656879,26656880,50,+,CGGCTAAAAGATTCATATGCTGCTGATGAAGTATGTTATAAATTTTAATT,Distal Intergenic,8,26780315,26780509,195,1,Gm45647-201,-123387,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,46,62,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5340,cg11805717,-0.0000237,0.0000125,-1.904098595,0.05782302,loss,ns,0.0000475,0.0000212,2.240224538,0.025784632,pos,ns,-0.006110564,0.006207847,-0.984329027,0.325721374,neg,ns,0.487153743,0.000400552,0.000213487,1.876235294,0.061562383,pos,ns,0.757214829,Zbtb43,Zbtb43_Intergenic_upstream,2,33516042,33516091,33516042,33516043,50,+,CGACAGCAGGCAATTCAATAAAGGGCCATGTATATTTTATAAGTACAATA,Distal Intergenic,2,33454888,33468559,13672,2,Zbtb43-204,-47483,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,6,71834,ENSMUSG00000026788,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23819,cg16830061,-0.00000374,0.00000358,-1.042842983,0.297833581,loss,ns,0.0000136,0.00000609,2.240133085,0.025790634,pos,ns,0.00403844,0.001783588,2.264223174,0.024250983,pos,ns,1.615270656,-0.000101277,0.0000613,-1.651150465,0.099720482,neg,ns,0.935381601,Scmh1,Scmh1_Exon,4,120463075,120463124,120463123,120463124,50,+,GTCATTTTACCTGGGACAAATACCTAAAAGAAACATGTTCAGTCCCAGCG,"Exon (Scmh1-201/Scmh1, exon 6 of 17)",4,120405307,120530184,124878,1,Scmh1-201,57768,Scmh1-201;Scmh1-213;Scmh1-206;Scmh1-204;Scmh1-202;Scmh1-203,Scmh1;Scmh1;Scmh1;Scmh1;Scmh1;Scmh1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,29871,ENSMUSG00000000085,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26229,cg15988311,-0.00000217,0.00000249,-0.870186505,0.384871796,loss,ns,0.00000949,0.00000424,2.240109785,0.025792164,pos,ns,0.003085793,0.00124142,2.485696205,0.01345657,pos,ns,1.871065632,-0.0000245,0.0000427,-0.574660972,0.565937396,neg,ns,0.930552603,Trrap,Trrap_Exon,5,144845382,144845431,144845382,144845383,50,-,CGCTGACACTGGCGTTGTGTGTGTTGCTCTCAGATTCTGGACAGCAGCAG,"Exon (Trrap-203/Trrap, exon 64 of 71)",5,144768794,144859778,90985,1,Trrap-203,76588,Trrap-203;Trrap-201;Trrap-202;Trrap-215;Trrap-207;Trrap-204,Trrap;Trrap;Trrap;Trrap;Trrap;Trrap,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,100683,ENSMUSG00000045482,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8155,cg15397234,-0.00000245,0.00000452,-0.542208983,0.588064087,loss,ns,-0.0000172,0.00000767,-2.239817002,0.025811388,neg,ns,-0.000605731,0.00224759,-0.269502373,0.787722414,neg,ns,0.103626797,0.0000574,0.0000773,0.742083884,0.458598385,pos,ns,0.803469148,Ebf1,Ebf1_Intron,11,44800976,44801025,44801024,44801025,50,-,TTCCCCTCCAGTGAAAAATGAACCTGTCTGAGACAAAAGCACAAACCACG,"Intron (Ebf1-203/Ebf1, intron 6 of 15)",11,44617317,45004995,387679,1,Ebf1-203,183659,Ebf1-203;Ebf1-202;Ebf1-201,Ebf1;Ebf1;Ebf1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,80,13591,ENSMUSG00000057098,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7708,cg05689726,0.0000263,0.00000815,3.227662149,0.001381663,gain,ns,0.000031,0.0000138,2.239776808,0.025814028,pos,ns,0.008761528,0.004053898,2.161259912,0.031440642,pos,ns,1.502508601,-0.000171604,0.000139413,-1.230900722,0.219293079,neg,ns,0.712549398,Adra1b,Adra1b_Exon,11,43835908,43835957,43835908,43835909,50,-,CGATGGCAAAGAGGATGAAGGCGCCCAGCACCAGGCCCACAGAGATGGCC,Promoter (<=1kb),11,43774606,43836332,61727,2,Adra1b-202,375,Adra1b-202;Adra1b-204;Adra1b-201;Adra1b-203,Adra1b;Adra1b;Adra1b;Adra1b,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,5,11548,ENSMUSG00000050541,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
9163,cg06620993,0.0000445,0.0000183,2.438069013,0.015327434,gain,ns,-0.0000694,0.000031,-2.238687605,0.025885661,neg,ns,0.020958456,0.009083301,2.307361094,0.021693263,pos,ns,1.66367512,-0.001032882,0.000312374,-3.306555074,0.001055461,neg,ns,0.309923096,Sh3pxd2a,Sh3pxd2a_Exon,19,47314077,47314126,47314125,47314126,50,+,GGAGGCTCAGCTCCGAGTTCTCCTGCTTCTTATAGTTGGACACCACCACG,"Exon (Sh3pxd2a-201/Sh3pxd2a, exon 8 of 15)",19,47260174,47464401,204228,2,Sh3pxd2a-201,150275,Sh3pxd2a-201;Sh3pxd2a-203;Sh3pxd2a-202,Sh3pxd2a;Sh3pxd2a;Sh3pxd2a,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,6,14218,ENSMUSG00000053617,conserved gene and region,19,47313990,47314398,409,*,409,35,0.682151589,0.735838388,0.085574572,1.92E-24,CpGisland,TRUE,U4,Pr-F
6749,cg03948870,0.0000291,0.00000507,5.750678134,2.13E-08,gain,yes,-0.0000193,0.00000861,-2.238605382,0.025891076,neg,ns,0.000189247,0.002522677,0.075018251,0.940248577,pos,ns,0.026757315,0.0000287,0.0000868,0.331338076,0.740613004,pos,ns,0.143886661,Lhx2,Lhx2_Intron,2,38347774,38347823,38347822,38347823,50,+,CCAGTTAATGTTGTAGTTAACTTGCAAATCAAGTAAATCTGTTGGTGCCG,"Intron (Lhx2-203/Lhx2, intron 1 of 4)",2,38339281,38369199,29919,1,Lhx2-203,8493,Lhx2-203;Lhx2-204;Lhx2-202;Lhx2-201;Lhx2-207;Lhx2-205,Lhx2;Lhx2;Lhx2;Lhx2;Lhx2;Lhx2,0;0;0;0;-3945;-4709,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,33,16870,ENSMUSG00000000247,mapped to different genes,2,38347822,38348178,357,*,357,27,0.518207283,1.126841244,0.075630252,1.55E-17,CpGisland,TRUE,U3,Pr-B
17865,cg07248876,-0.0000128,0.00000883,-1.451148134,0.147749778,loss,ns,-0.0000336,0.000015,-2.238080568,0.025925659,neg,ns,-0.01023423,0.004393605,-2.329346574,0.020482895,neg,ns,1.688608668,0.000167358,0.000151096,1.107627016,0.268881599,pos,ns,0.192741061,Phf21a,Phf21a_Intron,2,92182780,92182829,92182828,92182829,50,-,AAATACTTTCACTAATAAAATATGACAAACCGCCGGATTATACGTGGCCG,"Intron (Phf21a-201/Phf21a, intron 1 of 15)",2,92093117,92364666,271550,1,Phf21a-201,89663,Phf21a-201;Phf21a-202;Phf21a-204;Phf21a-209;Phf21a-208;Phf21a-207;Phf21a-212;Phf21a-219;Phf21a-206;Phf21a-216;Phf21a-221;Phf21a-220;Phf21a-210;Phf21a-205;Phf21a-211,Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,21,192285,ENSMUSG00000058318,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
22943,cg13932370,0.0000434,0.00000992,4.377084807,0.0000165,gain,ns,-0.0000377,0.0000169,-2.238077068,0.02592589,neg,ns,-0.002027071,0.004938292,-0.410480204,0.681737284,neg,ns,0.166382954,-0.0000423,0.000169827,-0.248960973,0.803555834,neg,ns,0.460262246,Ptprb,Ptprb_Intron,10,116310748,116310797,116310748,116310749,50,-,CGGATGTACAAAGGATTGACTGTTTTGTTTTCTGGCTCAGAAAGATTAGA,"Intron (Ptprb-202/Ptprb, intron 4 of 7)",10,116275523,116319921,44399,1,Ptprb-202,35225,Ptprb-202;Ptprb-203;Ptprb-201,Ptprb;Ptprb;Ptprb,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,19263,ENSMUSG00000020154,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26412,cg07311313,0.0000291,0.0000021,13.82661349,3.36E-34,gain,yes,-0.000008,0.00000357,-2.237729982,0.025948784,neg,ns,0.003691768,0.001047102,3.525699622,0.000486105,pos,ns,3.313269465,-0.0000202,0.000036,-0.562342164,0.574289314,neg,ns,0.045284419,Cdx2,Cdx2_Promoter,5,147307283,147307332,147307331,147307332,50,+,TGTTTACAAGACTCTATTAGTAATGACACAGACACCAATGGTTGGAGACG,Promoter (<=1kb),5,147300805,147307270,6466,2,Cdx2-201,-13,Cdx2-201,Cdx2,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,7,12591,ENSMUSG00000029646,conserved gene and region,5,147307331,147307436,106,*,106,9,0.632075472,0.851785714,0.08490566,0.0000015,CpGisland,TRUE,U13,Hc-P
21392,cg21124076,0.00000465,0.00000195,2.38940611,0.017473088,gain,ns,-0.00000741,0.00000331,-2.237643099,0.025954517,neg,ns,-0.00019171,0.000969523,-0.197736326,0.843380963,neg,ns,0.073976206,-0.0000154,0.0000333,-0.46213508,0.644308619,neg,ns,0.959487764,Helz,Helz_Exon,11,107604248,107604297,107604248,107604249,50,-,CGGGATAGCATTTAACACAGAAATATTTGGAACTTTTCGCCAAACCATAG,"Exon (Helz-202/Helz, exon 12 of 30)",11,107547956,107672287,124332,1,Helz-202,56292,Helz-202;Helz-201;Helz-203,Helz;Helz;Helz,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,8,78455,ENSMUSG00000020721,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9877,cg07042916,-0.00000672,0.00000251,-2.679170184,0.007774492,loss,ns,0.00000953,0.00000426,2.23747926,0.025965332,pos,ns,-0.00000211,0.001247698,-0.001691434,0.998651519,neg,ns,0.000586033,-0.0000119,0.0000429,-0.277426144,0.781637822,neg,ns,0.939710185,Gm49908,Gm49908_Intergenic_upstream,17,51282533,51282582,51282533,51282534,50,+,CGCACTGTACATGTAAAACAAATTTGGAAAGGAGCCTCAAGCTGGCCTCT,Distal Intergenic,17,51236771,51237062,292,2,Gm49908-201,-45471,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,9,9,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7503,cg03225002,0.0000471,0.00000437,10.78947145,2.96E-23,gain,yes,-0.0000166,0.00000742,-2.23692912,0.026001676,neg,ns,0.000925914,0.002172529,0.426191799,0.670263868,pos,ns,0.173754191,0.000103616,0.0000747,1.386855868,0.166482122,pos,ns,0.105329609,Ppp2r2b,Ppp2r2b_fiveUTR,18,42898785,42898834,42898833,42898834,50,+,GATTTTGCGGGTATCAATGTCCTCCTCCATTGACAGCAGGCTTACTTGCG,Promoter (<=1kb),18,42758468,42898815,140348,2,Ppp2r2b-206,0,Ppp2r2b-204;Ppp2r2b-202;Ppp2r2b-201;Ppp2r2b-203;Ppp2r2b-208;Ppp2r2b-207;Ppp2r2b-205;Ppp2r2b-206,Ppp2r2b;Ppp2r2b;Ppp2r2b;Ppp2r2b;Ppp2r2b;Ppp2r2b;Ppp2r2b;Ppp2r2b,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,9,15,72930,ENSMUSG00000024500,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
21216,cg13724954,0.000110395,0.0000207,5.345744693,0.000000175,gain,yes,-0.0000785,0.0000351,-2.236914854,0.026002619,neg,ns,0.066544122,0.0102782,6.474297413,3.72E-10,pos,ns,9.428898372,-0.00204692,0.000353466,-5.790989331,1.72E-08,neg,yes,0.633186895,Ddx5,Ddx5_threeUTR,11,106783795,106783844,106783795,106783796,50,+,CGAGTCCTCCGATTGTCATGCCTAGGCCTTGCCACAAAGACAGCACCTTT,3' UTR,11,106780355,106788532,8178,2,Ddx5-201,4688,Ddx5-201;Ddx5-208;Ddx5-205;Ddx5-207;Ddx5-203;Ddx5-202;Ddx5-209;Ddx5-206;Ddx5-204;Polg2-201;Polg2-203;Polg2-206;Polg2-204;Polg2-202,Ddx5;Ddx5;Ddx5;Ddx5;Ddx5;Ddx5;Ddx5;Ddx5;Ddx5;Polg2;Polg2;Polg2;Polg2;Polg2,0;0;0;0;0;0;2206;0;0;-4280;-4258;-4322;-4322;-4293,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,5,6,13207,ENSMUSG00000020719,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21624,cg06386315,-0.0000149,0.00000996,-1.500141086,0.134595602,loss,ns,0.0000379,0.0000169,2.236909921,0.026002945,pos,ns,0.015674204,0.004958184,3.161279429,0.001726082,pos,ns,2.762938479,-0.000435354,0.000170512,-2.553220609,0.011151838,neg,ns,0.85750757,Wdr47,Wdr47_threeUTR,3,108614396,108614445,108614444,108614445,50,-,AGCAGAAGATGAGCCCCAGCATGTAAGATTTTTATTCCTGAAGGTTTGCG,3' UTR,3,108591279,108645719,54441,1,Wdr47-201,23117,Wdr47-201;Wdr47-203;Wdr47-205;Wdr47-202;Wdr47-204,Wdr47;Wdr47;Wdr47;Wdr47;Wdr47,0;0;0;-4408;-4789,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,1,99512,ENSMUSG00000040389,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6138,cg04450349,-0.00000205,0.00000659,-0.311396274,0.755708691,loss,ns,0.000025,0.0000112,2.236748261,0.026013633,pos,ns,0.001474174,0.003280313,0.449400561,0.653456762,pos,ns,0.184783143,-0.0000365,0.00011281,-0.32328759,0.74669542,neg,ns,0.871324625,Tenm2,Tenm2_Exon,11,36139618,36139667,36139666,36139667,50,+,ATTTGCCATCTTTACAGGTCCCGTGCTCAATGCAGCGGGGGTGGCACACG,"Exon (Tenm2-202/Tenm2, exon 14 of 31)",11,36006656,37235882,1229227,2,Tenm2-202,1096215,Tenm2-202;Tenm2-208;Tenm2-201;Tenm2-204;Tenm2-205,Tenm2;Tenm2;Tenm2;Tenm2;Tenm2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,21,84,23964,ENSMUSG00000049336,conserved gene and region,11,36139608,36139733,126,*,126,10,0.642857143,0.782608696,0.079365079,0.000000572,CpGisland,TRUE,U15,NS
17655,cg26998224,0.0000477,0.00000537,8.886568426,5.26E-17,gain,yes,-0.0000204,0.00000912,-2.236644394,0.026020503,neg,ns,-0.001510745,0.002673292,-0.565125175,0.572397367,neg,ns,0.242302373,0.000130648,0.0000919,1.421097483,0.156293544,pos,ns,0.097885615,Zic4,Zic4_Intron,9,91367318,91367367,91367318,91367319,50,-,CGCCAGAGAAAATTTACTTACCTTCAGATGAGTGAGCAGAAAAAGAAATA,"Intron (Zic4-208/Zic4, intron 1 of 2)",9,91362413,91378915,16503,1,Zic4-208,4905,Zic1-201;Zic1-202;Zic1-203;Zic4-208;Zic4-206;Zic4-207;Zic4-211;Zic4-204;Zic4-203;Zic4-210;Zic4-209;Zic4-212,Zic1;Zic1;Zic1;Zic4;Zic4;Zic4;Zic4;Zic4;Zic4;Zic4;Zic4;Zic4,0;0;-4264;0;0;0;0;0;0;-3637;0;-3983,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,55,22774,ENSMUSG00000036972,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
17413,cg06158983,-0.00000371,0.00000295,-1.259608302,0.208758206,loss,ns,0.0000112,0.00000501,2.236604772,0.026023123,pos,ns,0.000782581,0.001467001,0.533456196,0.594100085,pos,ns,0.226140386,-0.000053,0.0000505,-1.050069882,0.294503894,neg,ns,0.926326417,Nrxn1,Nrxn1_Exon,17,90163782,90163831,90163830,90163831,50,-,TGTTTTTTACCTTTGTCGAGTAGCCATTCATCAACTACTCGACCAAGTCG,"Exon (Nrxn1-202/Nrxn1, exon 18 of 21)",17,90033631,91088907,1055277,2,Nrxn1-202,925076,Nrxn1-202;Nrxn1-207;Nrxn1-216;Nrxn1-204;Nrxn1-217;Nrxn1-209;Nrxn1-201;Nrxn1-213;Nrxn1-206;Nrxn1-223;Nrxn1-219,Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,22,27,18189,ENSMUSG00000024109,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5861,cg07793075,0.0000126,0.00000363,3.466096926,0.000602595,gain,ns,-0.0000138,0.00000617,-2.236533782,0.02602782,neg,ns,-0.001265324,0.001807887,-0.699891475,0.484519957,neg,ns,0.31468833,0.0000143,0.0000622,0.229427652,0.818687843,pos,ns,0.905077588,Cnot4,Cnot4_Exon,6,35051241,35051290,35051241,35051242,50,-,CGGTGCTGCTGAAATTGAGGGAACCTCTGGGGCAAGACTGAAAAGGTACT,"Exon (Cnot4-206/Cnot4, exon 10 of 11)",6,35022065,35133625,111561,2,Cnot4-206,82335,Cnot4-206;Cnot4-202;Cnot4-203;Cnot4-201;Cnot4-207;Cnot4-204;Cnot4-208,Cnot4;Cnot4;Cnot4;Cnot4;Cnot4;Cnot4;Cnot4,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,10,53621,ENSMUSG00000038784,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5281,cg14290519,-0.00000414,0.00000422,-0.980306741,0.327699151,loss,ns,0.000016,0.00000717,2.23631688,0.026042174,pos,ns,0.005338489,0.002101936,2.539796486,0.011579782,pos,ns,1.936299609,-0.000168963,0.0000723,-2.33743826,0.020052556,neg,ns,0.933454287,Ranbp17,Ranbp17_Intron,11,33300051,33300100,33300099,33300100,50,-,AAGTGCTGTTTGCAACATTTGGCACTTAGTGCGAAAACTTTTAATGTGCG,"Intron (Ranbp17-202/Ranbp17, intron 19 of 27)",11,33211795,33513746,301952,2,Ranbp17-202,213646,Ranbp17-202;Ranbp17-206;Ranbp17-203;Ranbp17-205,Ranbp17;Ranbp17;Ranbp17;Ranbp17,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,31,66011,ENSMUSG00000040594,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6310,cg11454083,0.00000283,0.00000349,0.810580484,0.418228462,gain,ns,-0.0000133,0.00000593,-2.236214229,0.026048969,neg,ns,-0.000769276,0.001736356,-0.443040375,0.658045537,neg,ns,0.181744052,-0.000033,0.0000597,-0.55261427,0.580925801,neg,ns,0.930145411,Slc25a5,Slc25a5_Exon,X,36798374,36798423,36798422,36798423,50,+,TTATTCTTTGCAGCTGACATCATGTACACAGGCACGCTTGACTGCTGGCG,"Exon (Slc25a5-201/Slc25a5, exon 4 of 4)",20,36795651,36798807,3157,1,Slc25a5-201,2723,Slc25a5-201;Slc25a5-202;Slc25a5-203,Slc25a5;Slc25a5;Slc25a5,0;2720;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,11740,ENSMUSG00000016319,conserved gene and region,X,36798408,36798500,93,*,93,9,0.602150538,1.13877551,0.096774194,0.000000492,CpGisland,TRUE,U11,Tr-P
22897,cg06666005,0.000100048,0.0000287,3.483380789,0.000566374,gain,ns,-0.000109105,0.0000488,-2.236036141,0.026060762,neg,ns,0.007577095,0.01429499,0.530052471,0.596454988,pos,ns,0.224422325,-0.0000823,0.000491604,-0.167358387,0.867197185,neg,ns,0.480712718,Meis2,Meis2_Promoter,2,116075283,116075332,116075331,116075332,50,-,ATCAGTCTGAATGTGAGTCACAAATGGTGCTTTTCCACATCAAAGAGACG,Promoter (9-10kb),2,115863064,116065839,202776,2,Meis2-205,-9493,NA,NA,NA,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,6,97,17536,ENSMUSG00000027210,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
19958,cg03047244,-0.0000118,0.0000055,-2.141425142,0.03301911,loss,ns,-0.0000209,0.00000935,-2.235913832,0.026068864,neg,ns,0.010411162,0.002737826,3.802711188,0.000172353,pos,ns,3.763581382,-0.000455755,0.0000942,-4.840546158,0.00000205,neg,ns,0.882167112,Clpb,Clpb_Intron,7,101762599,101762648,101762599,101762600,50,-,CGCCTGAGGGAGCTGCACAGTGACACTCTGGATTCCAACCGGCAAGTGTC,"Intron (Clpb-201/Clpb, intron 6 of 15)",7,101663633,101790168,126536,1,Clpb-201,98966,Clpb-201;Clpb-202;Clpb-211;Clpb-208;Clpb-207;Clpb-204;Clpb-209,Clpb;Clpb;Clpb;Clpb;Clpb;Clpb;Clpb,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,21,21,20480,ENSMUSG00000001829,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12678,cg14891941,-0.0000507,0.00000896,-5.660979026,3.43E-08,loss,yes,0.000034,0.0000152,2.235742011,0.026080249,pos,ns,0.003863713,0.004459282,0.866442931,0.386917416,pos,ns,0.412381722,-0.000250861,0.000153354,-1.63582531,0.102891016,neg,ns,0.773242225,Gm47894,Gm47894_Intergenic_downstream,10,66593354,66593403,66593354,66593355,50,-,CGTGACTGTGGGTTTATGGTGCCTCCACAGATTAAAAACAATCCCACTTA,Distal Intergenic,10,66691342,66691615,274,2,Gm47894-201,98261,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10616,cg12524200,0.0000299,0.00000482,6.197379633,1.83E-09,gain,yes,-0.0000183,0.00000819,-2.235439603,0.026100298,neg,ns,-0.001642714,0.002398681,-0.68484063,0.493956206,neg,ns,0.306311554,0.0000349,0.0000825,0.422563228,0.672906904,pos,ns,0.890442382,Rnf44,Rnf44_threeUTR,13,54680347,54680396,54680395,54680396,50,-,GAGGCAGCAGGCGCCAGGGGCTGCCTGCTAGGATGTGCCGGCCCCACACG,3' UTR,13,54679399,54687808,8410,2,Rnf44-218,7412,Rnf44-218;Rnf44-204;Rnf44-201;Rnf44-211;Rnf44-217;Rnf44-208;Rnf44-213;Rnf44-206;Rnf44-209;Rnf44-207;Rnf44-205;Rnf44-202;Rnf44-210;Rnf44-214;Rnf44-215;Rnf44-203;Rnf44-212;Rnf44-216,Rnf44;Rnf44;Rnf44;Rnf44;Rnf44;Rnf44;Rnf44;Rnf44;Rnf44;Rnf44;Rnf44;Rnf44;Rnf44;Rnf44;Rnf44;Rnf44;Rnf44;Rnf44,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,3,105239,ENSMUSG00000034928,conserved gene and region,13,54680316,54680437,122,*,122,9,0.663934426,0.671970624,0.073770492,0.0000048,CpGisland,TRUE,U6,En-Sp
11493,cg22299462,0.0000127,0.00000405,3.137806866,0.001865758,gain,ns,-0.0000154,0.00000688,-2.235372138,0.026104773,neg,ns,-0.000881614,0.002014985,-0.437529087,0.662032349,neg,ns,0.179120789,0.0000656,0.0000693,0.945987282,0.344891836,pos,ns,0.936292319,Nptn,Nptn_Exon,9,58618682,58618731,58618730,58618731,50,+,CATGTCAGAAACTAAGCTCACGGGGGACGCCTTTGAGCTGTACTGTGACG,"Exon (Nptn-212/Nptn, exon 2 of 8)",9,58582240,58651318,69079,1,Nptn-212,36442,Nptn-212;Nptn-201;Nptn-213;Nptn-206;Nptn-203;Nptn-202;Nptn-211;Nptn-207;Nptn-204,Nptn;Nptn;Nptn;Nptn;Nptn;Nptn;Nptn;Nptn;Nptn,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,20,22,20320,ENSMUSG00000032336,conserved gene and region,9,58618678,58618932,255,*,255,20,0.6,0.879917184,0.078431373,1.96E-13,CpGisland,TRUE,NA,NRS
3282,cg19930636,-0.00000094,0.00000193,-0.487877478,0.625981499,loss,ns,0.00000732,0.00000327,2.235329495,0.026107601,pos,ns,0.002951384,0.000958976,3.07764263,0.002272776,pos,ns,2.643443441,-0.0000752,0.000033,-2.28081802,0.023237515,neg,ns,0.962817984,Usp34,Usp34_Exon,11,23460568,23460617,23460616,23460617,50,+,GAATACAATCCTTCTCAGTGTCTAGATTGGTTGGCAGTGCAGACACCCCG,"Exon (Usp34-208/Usp34, exon 67 of 80)",11,23306895,23490560,183666,1,Usp34-208,153673,Usp34-208;Usp34-205;Usp34-204;Usp34-203;Usp34-206,Usp34;Usp34;Usp34;Usp34;Usp34,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,13,14,17847,ENSMUSG00000056342,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20102,cg18542904,-0.00000805,0.00000175,-4.593273253,0.00000635,loss,ns,-0.00000666,0.00000298,-2.235326011,0.026107833,neg,ns,-0.000860418,0.000872457,-0.98620141,0.32480338,neg,ns,0.488379461,-0.0000282,0.00003,-0.938783269,0.348572892,neg,ns,0.958137677,Atf7,Atf7_Exon,15,102593619,102593668,102593667,102593668,50,-,AGCCACTTTGATTCACAACGAGACATTCACAATAAAGTATATTGTAAACG,"Exon (Atf7-207/Atf7, exon 2 of 2)",15,102525946,102625073,99128,2,Atf7-211,31405,Atf7-211;Atf7-210;Atf7-209;Atf7-202;Atf7-203;Atf7-205;Atf7-204;Atf7-206;Atf7-208;Atf7-213;Atf7-212;Atf7-207;Gm28047-201,Atf7;Atf7;Atf7;Atf7;Atf7;Atf7;Atf7;Atf7;Atf7;Atf7;Atf7;Atf7;Gm28047,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,11,223922,ENSMUSG00000099083,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24886,cg03754039,0.0000914,0.0000074,12.35493061,8.74E-29,gain,yes,-0.0000281,0.0000126,-2.235079304,0.026124203,neg,ns,0.004009645,0.003682727,1.088770692,0.277100709,pos,ns,0.557362363,0.000148752,0.000126649,1.174524342,0.241086503,pos,ns,0.104742932,Pitx2,Pitx2_Exon,3,129213909,129213958,129213957,129213958,50,+,CCAGGAAGCCCGCCTCTGGTTTTAAGATGTTAGGCCAACAGGGAAGCGCG,Promoter (<=1kb),3,129213932,129216774,2843,1,Pitx2-208,0,Pitx2-207;Pitx2-201;Pitx2-203;Pitx2-204;Pitx2-208;Pitx2-202;Pitx2-206,Pitx2;Pitx2;Pitx2;Pitx2;Pitx2;Pitx2;Pitx2,0;0;0;0;0;0;-317,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,24,18741,ENSMUSG00000028023,mapped to different genes,3,129213666,129214125,460,*,460,39,0.67173913,0.776152981,0.084782609,5.23E-27,CpGisland,TRUE,U3,Pr-B
18424,cg23156157,-0.00000832,0.00000647,-1.286398296,0.199263976,loss,ns,0.0000246,0.000011,2.234957785,0.026132269,pos,ns,0.005871875,0.003219557,1.823814541,0.069142823,pos,ns,1.160252895,-0.0000924,0.00011072,-0.834277226,0.404767197,neg,ns,0.927321728,U2surp,U2surp_Intron,9,95487994,95488043,95487994,95487995,50,+,CGCTGCCGCAGACAGTTCAGCTGGTGTTGCTCACCAAGGCCAATGTCAAA,"Intron (U2surp-202/U2surp, intron 13 of 27)",9,95456898,95511894,54997,2,U2surp-202,23851,U2surp-202;U2surp-201;U2surp-208;U2surp-209,U2surp;U2surp;U2surp;U2surp,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,6,67958,ENSMUSG00000032407,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13964,cg27089055,-0.0000026,0.00000353,-0.734970763,0.46291293,loss,ns,0.0000134,0.000006,2.234898947,0.026136176,pos,ns,0.004208526,0.001759048,2.392501685,0.017329104,pos,ns,1.761223879,-0.000112642,0.0000605,-1.862045007,0.063542795,neg,ns,0.931605989,Atf2,Atf2_Exon,2,73853842,73853891,73853890,73853891,50,+,ATCTCATGTTTATGTTTATGGACAGCCAAATGATCCTCGTTGGTAAAACG,"Exon (Atf2-201/Atf2, exon 5 of 14)",2,73816509,73892536,76028,2,Atf2-205,38645,Atf2-205;Atf2-202;Atf2-201;Atf2-204;Atf2-206;Atf2-218;Atf2-203;Atf2-207;Atf2-219;Atf2-215;Atf2-212;Atf2-214;Atf2-216;Atf2-210;Atf2-211,Atf2;Atf2;Atf2;Atf2;Atf2;Atf2;Atf2;Atf2;Atf2;Atf2;Atf2;Atf2;Atf2;Atf2;Atf2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;-3238,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,11909,ENSMUSG00000027104,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7599,cg16861192,-0.0000111,0.0000035,-3.164440382,0.001708029,loss,ns,0.0000133,0.00000595,2.23475922,0.026145455,pos,ns,0.001578097,0.00174295,0.905417323,0.36594749,pos,ns,0.436581227,-0.0000219,0.0000599,-0.364688106,0.715592891,neg,ns,0.083442213,Hpse2,Hpse2_Exon,19,43388032,43388081,43388032,43388033,50,-,CGAGCCAGCCATCATGAATGATGGACGGATCCAGCTGCAGAGAGAGGAAG,Promoter (<=1kb),19,42786539,43388355,601817,2,Hpse2-201,274,Hpse2-201;Hpse2-202,Hpse2;Hpse2,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,6,545291,ENSMUSG00000074852,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
10091,cg04737131,0.00026659,0.0000226,11.81733766,7.45E-27,gain,yes,-0.0000856,0.0000383,-2.234731128,0.026147321,neg,ns,0.032053682,0.011227963,2.854808232,0.004596559,pos,ns,2.337567181,-0.000733556,0.000386129,-1.899770313,0.058391135,neg,ns,0.291314162,Gm28308,Gm28308_Intron,6,52165220,52165269,52165220,52165221,50,+,CGCCTCGCACCTCACAAATCATTTAAGCACCTCAGTCTGACGCCTGCAGT,"Intron (Gm28308-201/Gm28308, intron 3 of 3)",6,52163359,52213339,49981,2,Gm28308-201,48070,Gm28308-201;Hoxa2-201;Hoxa3-201,Gm28308;Hoxa2;Hoxa3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,46,103,,NA,mapped to different genes,6,52165135,52165261,127,*,127,10,0.637795276,0.819354839,0.078740158,0.000000615,CpGisland,TRUE,NA,NRS
27951,cg06333141,0.0000087,0.00000895,0.972751402,0.331435273,gain,ns,0.000034,0.0000152,2.234673278,0.026151164,pos,ns,0.016723729,0.004453372,3.755295672,0.000206747,pos,ns,3.684560385,-0.000405149,0.000153151,-2.64541848,0.008574935,neg,ns,0.519679325,Ppp2r5a,Ppp2r5a_Exon,1,191372465,191372514,191372513,191372514,50,-,CTTACCATTTTTACTATATCAGAATACGCTGATTCAACAATTACACCACG,"Exon (Ppp2r5a-201/Ppp2r5a, exon 2 of 13)",1,191351975,191397041,45067,2,Ppp2r5a-201,24527,Ppp2r5a-201;Ppp2r5a-207;Ppp2r5a-203;Ppp2r5a-204;Ppp2r5a-208,Ppp2r5a;Ppp2r5a;Ppp2r5a;Ppp2r5a;Ppp2r5a,0;0;-3740;-3751;26785,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,226849,ENSMUSG00000026626,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8722,cg10924987,0.00000137,0.00000703,0.19540897,0.845200811,gain,ns,-0.0000267,0.0000119,-2.234249435,0.026179334,neg,ns,0.00505449,0.003497986,1.444971536,0.149475925,pos,ns,0.825428749,-0.00029595,0.000120295,-2.460191707,0.014431556,neg,ns,0.924958243,Ddhd1,Ddhd1_threeUTR,14,45616553,45616602,45616553,45616554,50,+,CGCCACTCAACAGGCAGAAATTCAACATGTGTTGCATGGTTGGAAAAATG,3' UTR,14,45588467,45658142,69676,2,Ddhd1-203,41540,Ddhd1-203;Ddhd1-202;Ddhd1-201;Ddhd1-209;Ddhd1-205;Ddhd1-208;Ddhd1-206;Ddhd1-212;Ddhd1-207,Ddhd1;Ddhd1;Ddhd1;Ddhd1;Ddhd1;Ddhd1;Ddhd1;Ddhd1;Ddhd1,0;0;0;0;0;0;0;40758;40799,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,3,114874,ENSMUSG00000037697,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6055,cg08322205,0.0000315,0.0000051,6.183034191,1.98E-09,gain,yes,-0.0000193,0.00000866,-2.234043809,0.02619301,neg,ns,-0.001928443,0.002536709,-0.760214473,0.447704176,neg,ns,0.349008855,0.000205439,0.0000872,2.354950628,0.01914826,pos,ns,0.101183529,Psd2,Psd2_Intergenic_upstream,18,35920131,35920180,35920131,35920132,50,-,CGTCAGACCCAATTTATCTCGCCGCCAAAGTTTCACAGCCATCTGCTCGA,Distal Intergenic,18,35964830,36014712,49883,1,Psd2-201,-44699,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,24,29,74002,ENSMUSG00000024347,mapped to different genes,18,35919677,35920257,581,*,581,41,0.690189329,0.594514326,0.070567986,4.29E-25,CpGisland,TRUE,U3,Pr-B
21184,cg12687043,0.00000599,0.00000155,3.862144985,0.000136849,gain,ns,-0.00000588,0.00000263,-2.233874822,0.026204254,neg,ns,-0.000865433,0.000771676,-1.121498539,0.26294368,neg,ns,0.580137263,-0.0000335,0.0000265,-1.263228579,0.207456287,neg,ns,0.045146391,Mpped2,Mpped2_Intergenic_upstream,2,106650389,106650438,106650389,106650390,50,+,CGAGTCAAGTCTGAACAGTGACCTTGCTGAGTCGAAGCTGATTGGTGGTG,Distal Intergenic,2,106693269,106868356,175088,1,Mpped2-202,-42831,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,33,77015,ENSMUSG00000016386,conserved gene and region,2,106650342,106650531,190,*,190,11,0.547368421,0.791666667,0.057894737,0.00000285,CpGisland,TRUE,U2,Pr-W
7752,cg18254159,-0.00000673,0.00000337,-1.997747313,0.046617561,loss,ns,0.0000128,0.00000572,2.233464729,0.026231558,pos,ns,0.0029207,0.001676747,1.741884902,0.082520435,pos,ns,1.083438492,-0.0000791,0.0000577,-1.371823236,0.171110439,neg,ns,0.927615313,Rnf38,Rnf38_threeUTR,4,44129287,44129336,44129287,44129288,50,+,CGTCCACTGTAATCTTGCAGCAACACTCGGAATGATCACACAAAAACCAG,3' UTR,4,44126210,44167608,41399,2,Rnf38-202,38272,Rnf38-202;Rnf38-203;Rnf38-201;Rnf38-204;Rnf38-208;Rnf38-214;Rnf38-211,Rnf38;Rnf38;Rnf38;Rnf38;Rnf38;Rnf38;Rnf38,0;0;0;0;0;9616;10250,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,6,73469,ENSMUSG00000035696,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4124,cg06207569,0.000000106,0.00000249,0.042625534,0.966027482,gain,ns,0.00000945,0.00000423,2.233347554,0.026239364,pos,ns,0.001841494,0.001239772,1.485347999,0.138467846,pos,ns,0.858651062,-0.000033,0.0000426,-0.774885085,0.438998208,neg,ns,0.964201634,Gm12073,Gm12073_Intergenic_upstream,11,26926091,26926140,26926139,26926140,50,-,GCGTTTGAAGCTGCCGCGCGTGTTTGAAGCTGCGGCATTTGAAGCTGTCG,Distal Intergenic,11,26856387,26856910,524,2,Gm12073-201,-69230,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,4,100416537,NA,mapped to different genes,11,26926005,26926232,228,*,228,17,0.557017544,1.061336254,0.074561404,3.94E-11,CpGisland,TRUE,U15,NS
8941,cg22741748,0.00000509,0.00000998,0.51074619,0.609892311,gain,ns,-0.0000378,0.0000169,-2.232775334,0.026277513,neg,ns,-0.011143251,0.004964719,-2.244487813,0.025506181,neg,ns,1.593354566,-0.0000242,0.000170736,-0.14144711,0.887608614,neg,ns,0.853496079,Gm15217,Gm15217_Intergenic_upstream,14,46357867,46357916,46357915,46357916,50,+,ACACGAAGTATGTTCTCTACTGAATTCCTCAAGTGAAGCAAAACCACACG,Distal Intergenic,14,46379414,46383418,4005,1,Gm15217-202,-21498,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,100041724,ENSMUSG00000079261,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20309,cg13383691,0.0000599,0.0000126,4.738053733,0.00000329,gain,ns,0.0000479,0.0000215,2.231712633,0.02634849,pos,ns,0.015084439,0.006293627,2.396779993,0.01713183,pos,ns,1.766196249,-0.000337423,0.000216437,-1.558988626,0.120019348,neg,ns,0.249803836,Hoxc5,Hoxc5_Exon,15,102994005,102994054,102994005,102994006,50,+,CGGTCCTGTGCGCTTTTATTGTGCTTCTAACCCCAGTAGAGTAGAACTAA,"Exon (Hoxc8-202/Hoxc8, exon 1 of 1)",15,102967443,103015676,48234,1,Hoxc5-202,26562,Hoxc5-202;Hoxc6-202;Hoxc8-201;Hoxc8-202,Hoxc5;Hoxc6;Hoxc8;Hoxc8,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,72,134,15424,ENSMUSG00000022485,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
7370,cg07520422,-0.00000223,0.00000404,-0.551821127,0.581468479,loss,ns,0.0000153,0.00000686,2.231575823,0.026357639,pos,ns,0.001786385,0.002008744,0.88930468,0.374528923,pos,ns,0.426514638,0.00005,0.0000691,0.723993455,0.469615751,pos,ns,0.929404995,Gm16415,Gm16415_Intergenic_upstream,18,42421771,42421820,42421771,42421772,50,+,CGGCATGGATGCAAACCAATTAAGTTAAGCACCTACCGCAATCACAAGTG,Distal Intergenic,18,42441019,42441507,489,1,Gm16415-201,-19199,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,4,100042767,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19901,cg09919810,-0.0000108,0.00000393,-2.756124801,0.00619538,loss,ns,-0.0000149,0.00000668,-2.231300894,0.026376034,neg,ns,-0.007894684,0.001958281,-4.031435966,0.0000698,neg,ns,4.155934563,0.000193075,0.0000673,2.866951858,0.004428259,pos,ns,0.92670996,Nkx6-1,Nkx6-1_Intergenic_downstream,5,101603432,101603481,101603432,101603433,50,-,CGCTCCAGTAGCTGTTAATTTCAGTTTGCCGGAATGATTTATGGGGAGGT,Distal Intergenic,5,101658139,101664996,6858,2,Nkx6-1-201,61564,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,10,18096,ENSMUSG00000035187,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15206,cg11955993,0.00000227,0.00000115,1.962269585,0.050625389,gain,ns,-0.00000438,0.00000196,-2.23106784,0.026391636,neg,ns,0.000296214,0.000574604,0.515510653,0.606563659,pos,ns,0.217123613,-0.00000586,0.0000198,-0.296718607,0.766880052,neg,ns,0.03038109,Rhcg,Rhcg_Exon,7,79592462,79592511,79592462,79592463,50,-,CGTTTAATTAACATGCTCCTCTTGGCAGCTGCTGACAAGTTCCAGAAACA,"Exon (Gm45169-201/Gm45169-201, exon 1 of 2)",7,79593369,79594929,1561,2,Rhcg-203,2467,Rhcg-201;Rhcg-203,Rhcg;Rhcg,25146;2418,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,9,56315,ENSMUSG00000030549,conserved gene but different region,7,79592197,79592463,267,*,267,21,0.685393258,0.717007673,0.078651685,4.16E-14,CpGisland,TRUE,U3,Pr-B
22436,cg01292679,0.0000416,0.0000124,3.353817897,0.000895968,gain,ns,0.000047,0.0000211,2.230674659,0.026417976,pos,ns,0.020141034,0.006171023,3.263807831,0.001222071,pos,ns,2.912903558,-0.000672183,0.000212221,-3.167373057,0.001691436,neg,ns,0.447356767,Fam222a,Fam222a_Intergenic_upstream,5,114537646,114537695,114537694,114537695,50,+,TGTAATTACTTTGGGGACACAGTTAACCTCTCATTAGGAACGCACGGCCG,Distal Intergenic,5,114568016,114613220,45205,1,Fam222a-201,-30321,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,16,433940,ENSMUSG00000041930,conserved gene and region,5,114537686,114537818,133,*,133,14,0.601503759,1.200515796,0.105263158,2.58E-11,CpGisland,TRUE,U13,Hc-P
26778,cg12315723,-0.000023,0.00000759,-3.02336241,0.002708576,loss,ns,0.0000288,0.0000129,2.230384628,0.02643742,pos,ns,0.008361486,0.003779125,2.212545562,0.027657513,pos,ns,1.55818687,-0.000300224,0.000129964,-2.310060513,0.021541359,neg,ns,0.851530632,Fubp1,Fubp1_threeUTR,3,152232730,152232779,152232778,152232779,50,+,AAATGCCTGTTTTGTGCTTTACAATAAATGATATGAAACCTCCTGTGTCG,3' UTR,3,152210422,152236826,26405,1,Fubp1-202,22308,Fubp1-202;Fubp1-220;Fubp1-206;Fubp1-205;Fubp1-215;Fubp1-201;Fubp1-219;Fubp1-216;Fubp1-210;Fubp1-217;Fubp1-211;Fubp1-207;Fubp1-208;Fubp1-218;Nexn-212;Nexn-201;Nexn-211;Nexn-203;Nexn-207,Fubp1;Fubp1;Fubp1;Fubp1;Fubp1;Fubp1;Fubp1;Fubp1;Fubp1;Fubp1;Fubp1;Fubp1;Fubp1;Fubp1;Nexn;Nexn;Nexn;Nexn;Nexn,0;0;0;0;0;0;0;0;0;0;0;6859;5425;4889;32988;33539;22532;15485;22532,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,2,51886,ENSMUSG00000028034,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20373,cg08123193,0.0000283,0.00000349,8.121619047,1.10E-14,gain,yes,-0.0000132,0.00000593,-2.229284067,0.026511317,neg,ns,0.003220401,0.001736794,1.854221087,0.064657143,pos,ns,1.189383489,-0.000103481,0.0000597,-1.732531696,0.084173508,neg,ns,0.024949991,Hoxc5,Hoxc5_Exon,15,103014341,103014390,103014389,103014390,50,+,GCAGAGACGAAGCGGCTCCTCTGAACCCCGGGATGTACAGTCAGAAGGCG,"Exon (Hoxc5-201/Hoxc5, exon 1 of 2)",15,102967443,103015676,48234,1,Hoxc5-202,46898,Hoxc4-202;Hoxc5-202;Hoxc5-201;Hoxc6-202;Hoxc6-203;Hoxc6-201,Hoxc4;Hoxc5;Hoxc5;Hoxc6;Hoxc6;Hoxc6,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,72,134,15424,ENSMUSG00000022485,mapped to different genes,15,103014167,103014734,568,*,568,41,0.588028169,0.835773758,0.072183099,1.73E-25,CpGisland,TRUE,U13,Hc-P
26133,cg15851301,-0.00000601,0.00000425,-1.414298528,0.158277815,loss,ns,-0.0000161,0.00000722,-2.229038781,0.026527811,neg,ns,-0.004917465,0.002115125,-2.32490474,0.020722548,neg,ns,1.683556854,0.000128969,0.0000727,1.773036419,0.077204544,pos,ns,0.886101959,Lmo4,Lmo4_Intergenic_downstream,3,144174117,144174166,144174117,144174118,50,+,CGTCTGATTGAAGGTCCAGCGCAGCTAATTAATTTCATTAGGAAGTGAAG,Distal Intergenic,3,144189062,144194818,5757,2,Lmo4-206,20652,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,54,16911,ENSMUSG00000028266,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10336,cg06716213,-0.00000444,0.00000605,-0.734735975,0.46305573,loss,ns,0.0000229,0.0000103,2.228845866,0.026540789,pos,ns,0.007783199,0.003009696,2.586041838,0.010164408,pos,ns,1.992917929,-0.000233403,0.000103503,-2.255027332,0.024828997,neg,ns,0.904897597,Akap6,Akap6_Intron,12,53071216,53071265,53071216,53071217,50,-,CGGACCATTCTCTGAAGTATTCTGTTTATGAAGAATTTATGATTGCAAAC,"Intron (Akap6-201/Akap6, intron 10 of 13)",12,52699383,53155599,456217,1,Akap6-201,371833,Akap6-201;Akap6-202,Akap6;Akap6,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,13,238161,ENSMUSG00000061603,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10316,cg27186715,-0.0000108,0.0000112,-0.972486507,0.331566764,loss,ns,0.0000422,0.000019,2.228547742,0.026560857,pos,ns,0.005989624,0.00555247,1.078731434,0.281546095,pos,ns,0.550450492,-0.000367046,0.000190949,-1.922222642,0.055494025,neg,ns,0.650036777,Med30,Med30_Intergenic_downstream,15,52902277,52902326,52902325,52902326,50,-,TATTACCATACCTATTAAGTGAATAAACCAGCCAGAGCCCAATTACATCG,Distal Intergenic,15,52712442,52730564,18123,1,Med30-201,189884,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,69790,ENSMUSG00000038622,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
65,cg17809467,-0.0000133,0.00000435,-3.048121435,0.002501062,loss,ns,-0.0000165,0.0000074,-2.228059756,0.026593733,neg,ns,0.007819698,0.002167243,3.608131682,0.000359415,pos,ns,3.444403472,-0.000317551,0.0000745,-4.260642938,0.0000271,neg,ns,0.925736652,Chka,Chka_threeUTR,19,3871006,3871055,3871054,3871055,50,-,TGTCCATGCGATCGTGCCTGGAGCACTCTGGTTTCCAGGTGACAGACACG,3' UTR,19,3851773,3894365,42593,1,Chka-209,19233,Chka-209;Chka-202;Chka-205;Chka-207;Chka-214;Chka-203;Chka-201;Chka-210;Chka-206;Chka-213;Chka-212;Chka-211;Chka-208,Chka;Chka;Chka;Chka;Chka;Chka;Chka;Chka;Chka;Chka;Chka;Chka;Chka,0;0;0;0;19174;0;0;0;0;-3609;-4310;-4324;-4350,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,2,12660,ENSMUSG00000024843,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5073,cg09543858,0.00000316,0.00000262,1.205302845,0.229005653,gain,ns,-0.00000993,0.00000446,-2.227939922,0.026601812,neg,ns,-0.001067857,0.001305955,-0.817683151,0.41416615,neg,ns,0.382825399,0.0000163,0.0000449,0.361970482,0.717620702,pos,ns,0.953954646,Sgms1,Sgms1_Exon,19,32159623,32159672,32159671,32159672,50,+,TCAAAAAATGTGTCCGGTAGTGGAGGCTGCACCTCCTTAGGAGGTACTCG,"Exon (Sgms1-201/Sgms1, exon 6 of 10)",19,32122727,32388512,265786,2,Sgms1-201,228840,Sgms1-201;Sgms1-212;Sgms1-209;Sgms1-215;Sgms1-214;Sgms1-206;Sgms1-202;Sgms1-213;Sgms1-210;Sgms1-208;Sgms1-205,Sgms1;Sgms1;Sgms1;Sgms1;Sgms1;Sgms1;Sgms1;Sgms1;Sgms1;Sgms1;Sgms1,0;0;0;0;0;0;0;36756;79140;163557;117254,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,8,208449,ENSMUSG00000040451,conserved gene and region,19,32159576,32159686,111,*,111,9,0.504504505,1.274234694,0.081081081,0.00000221,CpGisland,TRUE,U10,Tr-S
7806,cg09005051,0.0000156,0.0000107,1.455289089,0.146601121,gain,ns,0.0000405,0.0000182,2.227637987,0.026622176,pos,ns,0.002770272,0.005331386,0.519615716,0.603702254,pos,ns,0.219177203,-0.0000262,0.000183346,-0.142914194,0.886450794,neg,ns,0.875069029,Gm12455,Gm12455_Intergenic_downstream,4,44392857,44392906,44392857,44392858,50,+,CGCTCGCTCTAAATTAGGGCCTAGTTGCTAAATAACTAATTTAGTCCTGC,Distal Intergenic,4,44382922,44383337,416,1,Gm12455-201,9935,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,15,15,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8044,cg11876476,0.00000221,0.00000963,0.229586974,0.818564137,gain,ns,0.0000364,0.0000164,2.226991271,0.026665841,pos,ns,0.001741362,0.004793417,0.363281872,0.716641931,pos,ns,0.144697785,0.000228898,0.000164845,1.388563646,0.165962364,pos,ns,0.400081131,Pax2,Pax2_Intergenic_upstream,19,44699513,44699562,44699561,44699562,50,+,ATCTTTATCTATTCCCCAGCTGACAGCAGGAAGCCTTGGCTGCCTTACCG,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-56483,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
5473,cg14263924,0.0000762,0.0000126,6.064777453,3.84E-09,gain,yes,-0.0000475,0.0000214,-2.226768374,0.026680905,neg,ns,0.020655967,0.006255787,3.301897618,0.001072531,pos,ns,2.969590133,-0.00074052,0.000215136,-3.442103641,0.000656478,neg,ns,0.407295169,Rxrb,Rxrb_Exon,17,34036853,34036902,34036901,34036902,50,-,ACCTGCAGGTCCCTCTCCAGGGTGCTGACAGAGCTAGTGTCCAAAATGCG,"Exon (Rxrb-201/Rxrb, exon 8 of 10)",17,34031812,34038397,6586,1,Rxrb-201,5041,Col11a2-201;Col11a2-202;Col11a2-203;Col11a2-204;Col11a2-209;Col11a2-212;Col11a2-211;Rxrb-201;Rxrb-204;Rxrb-207;Rxrb-203;Rxrb-202;Rxrb-210;Rxrb-206;Rxrb-209;Rxrb-205;Rxrb-208,Col11a2;Col11a2;Col11a2;Col11a2;Col11a2;Col11a2;Col11a2;Rxrb;Rxrb;Rxrb;Rxrb;Rxrb;Rxrb;Rxrb;Rxrb;Rxrb;Rxrb,-2535;-2570;-2570;-2570;-2570;-2570;-2753;0;5037;0;0;0;3301;2945;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,20182,ENSMUSG00000039656,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16979,cg03200189,-0.0000452,0.00000957,-4.721920532,0.00000354,loss,ns,0.0000362,0.0000163,2.226690863,0.026686145,pos,ns,0.014652222,0.004760813,3.077672036,0.002272558,pos,ns,2.643485004,-0.000598542,0.000163724,-3.655797434,0.000301063,neg,ns,0.766662247,Zfp423,Zfp423_Intron,8,87745249,87745298,87745297,87745298,50,-,ATAATTACTTGGCTCCCACACAGCTGAGTTCCATAGATGCATTATTAACG,"Intron (Zfp423-203/Zfp423, intron 3 of 5)",8,87661810,87804439,142630,2,Zfp423-203,59141,Zfp423-203;Zfp423-202;Zfp423-201,Zfp423;Zfp423;Zfp423,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,42,53,94187,ENSMUSG00000045333,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26390,cg00194857,0.000085,0.00000767,11.08258017,2.88E-24,gain,yes,-0.000029,0.000013,-2.225907545,0.026739152,neg,ns,0.005408535,0.003815916,1.41736238,0.157381272,pos,ns,0.803046949,0.00000612,0.000131229,0.046644483,0.962826613,pos,ns,0.191120615,Nkx2-2,Nkx2-2_Exon,2,147188403,147188452,147188403,147188404,50,+,CGCTCTCTTTCAATGTGTCCTAACTGTTTGGAATAAATCTAAGGTTGTTC,"Exon (6430503K07Rik-201/6430503K07Rik-201, exon 3 of 3)",2,147186305,147194243,7939,2,Nkx2-2-202,5791,Nkx2-2-203;Nkx2-2-201;Nkx2-2-202;Nkx2-2-204,Nkx2-2;Nkx2-2;Nkx2-2;Nkx2-2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,15,30,18088,ENSMUSG00000027434,conserved gene but different region,2,147188041,147188404,364,*,364,26,0.585164835,0.836633663,0.071428571,2.81E-16,CpGisland,TRUE,U13,Hc-P
24675,cg17129624,-0.0000142,0.00000408,-3.467173631,0.000600277,loss,ns,-0.0000154,0.00000693,-2.225791817,0.026746991,neg,ns,-0.000488827,0.002031518,-0.240621389,0.810007624,neg,ns,0.091510893,-0.0000715,0.0000699,-1.024003672,0.306631941,neg,ns,0.933141173,Lrp1,Lrp1_Exon,10,127573465,127573514,127573465,127573466,50,-,CGGATCTCCATCTGACGTGCGTACAGCAGGAACTTCTTAAACTCTGTGGG,"Exon (Lrp1-201/Lrp1, exon 29 of 89)",10,127538161,127621148,82988,2,Lrp1-201,47634,Lrp1-201;Lrp1-206,Lrp1;Lrp1,0;8371,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,8,16971,ENSMUSG00000040249,conserved gene and region,10,127573292,127573545,254,*,254,16,0.535433071,0.87965368,0.062992126,2.07E-09,CpGisland,TRUE,U10,Tr-S
9784,cg05438072,0.000184955,0.0000404,4.5796857,0.00000675,gain,ns,-0.000152707,0.0000686,-2.225719545,0.026751887,neg,ns,0.048900531,0.020100515,2.432799913,0.015547933,pos,ns,1.808327347,-0.001286287,0.000691255,-1.860799514,0.063719114,neg,ns,0.480249254,Ppp2r1b,Ppp2r1b_Intron,9,50856323,50856372,50856371,50856372,50,-,AAAAATATTGACTGGGGAGTTTGGACAGCACTGTTCATTTTCTCTCACCG,"Intron (Ppp2r1b-203/Ppp2r1b, intron 1 of 3)",9,50845301,50861761,16461,1,Ppp2r1b-203,11022,Ppp2r1b-203;Ppp2r1b-204;Ppp2r1b-201;Ppp2r1b-202;Ppp2r1b-206;Ppp2r1b-209;Ppp2r1b-211;Ppp2r1b-205;Ppp2r1b-207,Ppp2r1b;Ppp2r1b;Ppp2r1b;Ppp2r1b;Ppp2r1b;Ppp2r1b;Ppp2r1b;Ppp2r1b;Ppp2r1b,0;-552;-552;-565;-585;-591;-592;-594;-607,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,73699,ENSMUSG00000032058,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
18059,cg00809089,-0.00000267,0.0000039,-0.684290108,0.494303224,loss,ns,0.0000148,0.00000663,2.225612417,0.026759146,pos,ns,0.00444103,0.001942705,2.286003434,0.022928506,pos,ns,1.639624241,-0.000115467,0.0000668,-1.728308594,0.084928668,neg,ns,0.926197403,Pola1,Pola1_Intron,X,93429577,93429626,93429577,93429578,50,-,CGACTCGCATGGTGAACATAATTGCAATAATTTGCAAAACACCATGGCAA,"Intron (Pola1-201/Pola1, intron 34 of 36)",20,93304767,93632155,327389,2,Pola1-201,202529,Pola1-201,Pola1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,59,62,18968,ENSMUSG00000006678,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9189,cg08768611,0.0000985,0.00000932,10.56193766,1.78E-22,gain,yes,-0.0000352,0.0000158,-2.225565344,0.026762337,neg,ns,0.017544675,0.0046395,3.781587832,0.000186948,pos,ns,3.728279305,-0.00049808,0.000159552,-3.121739759,0.001967305,neg,ns,0.282236815,Cadm1,Cadm1_Intergenic_upstream,9,47475067,47475116,47475115,47475116,50,+,AGCAGTGTGCTGACGCTGGCTGTATATCCTGAAAGGGCAAAGTCCAGCCG,Distal Intergenic,9,47530173,47853385,323213,1,Cadm1-204,-55057,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,18,77,54725,ENSMUSG00000032076,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5327,cg04264558,-0.0000286,0.00000407,-7.020432181,1.40E-11,loss,yes,0.0000154,0.00000692,2.225195032,0.026787446,pos,ns,0.000168403,0.002027924,0.083041835,0.93387187,pos,ns,0.029712706,0.00000603,0.0000697,0.08648292,0.931138365,pos,ns,0.935143865,Exoc4,Exoc4_Intron,6,33465604,33465653,33465604,33465605,50,-,CGGATTAGCTGCACTGTCTCTTCAAAGGCTATCCAATCAAGGAGGGGTTA,"Intron (Exoc4-201/Exoc4, intron 9 of 17)",6,33249085,33973979,724895,1,Exoc4-201,216519,Exoc4-201;Exoc4-202;Exoc4-204;Exoc4-203;Exoc4-209,Exoc4;Exoc4;Exoc4;Exoc4;Exoc4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,7,20336,ENSMUSG00000029763,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12078,cg07782608,-0.00000155,0.00000154,-1.00413235,0.31609796,loss,ns,-0.00000584,0.00000262,-2.224938044,0.026804883,neg,ns,0.000442189,0.000768457,0.575424345,0.565421777,pos,ns,0.247627469,-0.0000167,0.0000264,-0.630818525,0.528623974,neg,ns,0.956455863,Ccar1,Ccar1_Exon,10,62764292,62764341,62764292,62764293,50,+,CGGAAATAGAAAAAGGGATTAGCGTTCAGTGCCTGTTCTCCATCAGCCTC,"Exon (Ccar1-201/Ccar1, exon 14 of 25)",10,62743928,62792231,48304,2,Ccar1-201,27890,Ccar1-201;Ccar1-211;Ccar1-207;Ccar1-206;Ccar1-212;Ccar1-205;Ccar1-210;Gm48145-201,Ccar1;Ccar1;Ccar1;Ccar1;Ccar1;Ccar1;Ccar1;Gm48145,0;0;-825;0;-3943;0;0;2541,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,10,67500,ENSMUSG00000020074,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26716,cg04309649,-0.00000197,0.00000206,-0.955969052,0.339832758,loss,ns,0.0000078,0.00000351,2.224743587,0.026818084,pos,ns,0.002351193,0.001027038,2.289293873,0.022734288,pos,ns,1.643318649,-0.0000893,0.0000353,-2.527340484,0.011989898,neg,ns,0.943476421,Camta1,Camta1_Exon,4,151830466,151830515,151830466,151830467,50,-,CGGCAGACATTCAAGCAGCTTTTTCGGTAAAAAGATTTTTACATGACTAC,"Exon (Camta1-211/Camta1, exon 3 of 25)",4,150917322,151861669,944348,2,Camta1-211,31154,Camta1-211;Camta1-202;Camta1-201;Camta1-210;Camta1-209;Camta1-212;Camta1-206,Camta1;Camta1;Camta1;Camta1;Camta1;Camta1;Camta1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,22,100072,ENSMUSG00000014592,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21089,cg26501210,-0.0000054,0.00000167,-3.224830744,0.001394947,loss,ns,0.00000633,0.00000284,2.224432036,0.026839246,pos,ns,0.001743928,0.000833269,2.092874791,0.037173011,pos,ns,1.429772257,-0.0000547,0.0000287,-1.907636744,0.057362051,neg,ns,0.96036603,Usp24,Usp24_Intron,4,106419887,106419936,106419935,106419936,50,+,AAAATGGTTTCTAAACAAATAAAATGTTTTTCAAAGCTTTCCATGAGGCG,"Intron (Usp24-204/Usp24, intron 56 of 67)",4,106316213,106441317,125105,1,Usp24-204,103674,Usp24-204;Usp24-201,Usp24;Usp24,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,5,329908,ENSMUSG00000028514,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23778,cg12460432,0.0000225,0.0000371,0.605930778,0.545004116,gain,ns,-0.000140249,0.0000631,-2.22423158,0.026852869,neg,ns,-0.028412516,0.018472984,-1.538057775,0.125054534,neg,ns,0.902900558,0.001262139,0.000635284,1.986730322,0.047832366,pos,ns,0.456937434,Foxo6,Foxo6_Intergenic_upstream,4,120333086,120333135,120333134,120333135,50,-,TAAAGATTATGGGCCTTGCAAATACATAACATTTTACTGCCTTGCAGACG,Distal Intergenic,4,120267079,120287349,20271,2,Foxo6-201,-45786,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,9,42,329934,ENSMUSG00000052135,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17366,cg08445744,-0.0000046,0.0000241,-0.191182442,0.848507811,loss,ns,0.0000909,0.0000409,2.224202846,0.026854822,pos,ns,-0.024316498,0.011974265,-2.030729811,0.043135599,neg,ns,1.365164168,0.000669342,0.000411794,1.625429334,0.105087273,pos,ns,0.821042785,Tiam1,Tiam1_Exon,16,89897990,89898039,89898038,89898039,50,+,AAATGTTCTTGGCTCAGATCAGAGAGTGAGAATTCCAGGCTGTCCTCCCG,"Exon (Tiam1-213/Tiam1, exon 4 of 28)",16,89787111,89974699,187589,2,Tiam1-213,76660,Tiam1-213;Tiam1-204;Tiam1-201;Tiam1-211;Tiam1-206;Tiam1-209,Tiam1;Tiam1;Tiam1;Tiam1;Tiam1;Tiam1,0;0;0;76660;62698;20946,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,21844,ENSMUSG00000002489,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5126,cg25236972,0.0000945,0.0000127,7.415271268,1.17E-12,gain,yes,-0.0000481,0.0000216,-2.223981385,0.026869881,neg,ns,0.007237771,0.00634086,1.141449362,0.25456393,pos,ns,0.594203134,-0.000152366,0.000218062,-0.698728799,0.48524539,neg,ns,0.345604472,Bach2,Bach2_Intron,4,32405306,32405355,32405354,32405355,50,-,CAATTATTAGGGCGTAAAGGGAACTGATGACTCAACTTAGCACCACCGCG,"Intron (Bach2-202/Bach2, intron 2 of 6)",4,32238804,32586104,347301,1,Bach2-202,166502,Bach2-202;Bach2-201;Bach2-205,Bach2;Bach2;Bach2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,14,12014,ENSMUSG00000040270,conserved gene and region,4,32405352,32405552,201,*,201,13,0.412935323,1.555357143,0.064676617,7.06E-08,CpGisland,TRUE,NA,NRS
9828,cg06219485,0.0000257,0.00000471,5.451140735,0.000000102,gain,yes,0.0000178,0.00000801,2.223972176,0.026870508,pos,ns,0.002444104,0.002346135,1.041757485,0.298335884,pos,ns,0.525294506,-0.0000465,0.0000807,-0.576541647,0.564667507,neg,ns,0.116778829,Sik2,Sik2_Promoter,9,51007984,51008033,51007984,51007985,50,+,CGTCTTAAAATAGAGACCCTGAGGAGAGCAGCTTGAGGCAGTGGAAGGAA,Promoter (<=1kb),9,50892801,51008936,116136,2,Sik2-205,903,Sik2-205;Sik2-206;Sik2-204;Sik2-201;Sik2-202;Sik2-207;Sik2-208;Sik2-203,Sik2;Sik2;Sik2;Sik2;Sik2;Sik2;Sik2;Sik2,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,1,2,235344,ENSMUSG00000037112,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25460,cg06220276,-0.0000075,0.00000588,-1.276851823,0.202610161,loss,ns,-0.0000222,0.00000998,-2.223936313,0.026872947,neg,ns,-0.005466737,0.002924202,-1.86947958,0.06249872,neg,ns,1.204128876,0.0000422,0.000100563,0.419961849,0.674804242,pos,ns,0.864486448,Snap25,Snap25_Exon,2,136769754,136769803,136769754,136769755,50,+,CGTGTCGAAGAAGGCATGAACCATATCAACCAAGACATGAAGGAGGCTGA,"Exon (Snap25-202/Snap25, exon 5 of 8)",2,136713453,136782428,68976,1,Snap25-201,56301,Snap25-201;Snap25-202,Snap25;Snap25,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,9,20614,ENSMUSG00000027273,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20334,cg12232783,0.0000123,0.00000239,5.133344341,0.000000504,gain,yes,0.00000902,0.00000406,2.22353123,0.026900513,pos,ns,0.003400676,0.001189011,2.860088538,0.004522676,pos,ns,2.344604547,-0.0000232,0.0000409,-0.568251186,0.570275795,neg,ns,0.055604181,Hoxc5,Hoxc5_Intron,15,103009379,103009428,103009427,103009428,50,+,TTCAAAGCACACACTTAGTCTCAACTAGGGAATCAACAGAAGCAGAAGCG,"Intron (Hoxc5-202/Hoxc5, intron 1 of 1)",15,102967443,103015676,48234,1,Hoxc5-202,41936,Hoxc5-202;Hoxc5-201;Hoxc6-202;Hoxc6-203;Hoxc6-201,Hoxc5;Hoxc5;Hoxc6;Hoxc6;Hoxc6,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,46,134,15424,ENSMUSG00000022485,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
16062,cg17782734,-0.0000516,0.0000104,-4.946105997,0.00000124,loss,yes,0.0000394,0.0000177,2.223456318,0.026905614,pos,ns,-0.002009493,0.005195382,-0.386784487,0.699181132,neg,ns,0.1554103,-0.000255944,0.000178669,-1.432506623,0.153006478,neg,ns,0.698886808,Bnc2,Bnc2_Intron,4,84331610,84331659,84331610,84331611,50,-,CGAGGCGAAGATGCCACCCCAGCCTTACATCTGTCTGCTTTCATTTGTCT,"Intron (Bnc2-201/Bnc2, intron 6 of 7)",4,84275095,84675034,399940,2,Bnc2-201,343375,Bnc2-201;Bnc2-202;Bnc2-214;Bnc2-215;Bnc2-206;Bnc2-211;Bnc2-205;Bnc2-217;Bnc2-207;Bnc2-212,Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,91,242509,ENSMUSG00000028487,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12032,cg10591012,-0.0000136,0.00000807,-1.679971409,0.093970285,loss,ns,0.0000305,0.0000137,2.223383726,0.026910557,pos,ns,0.00812597,0.004017595,2.022595622,0.043973136,pos,ns,1.356812557,-0.000294435,0.000138165,-2.131041361,0.033872312,neg,ns,0.694405593,Htr4,Htr4_Exon,18,62437467,62437516,62437515,62437516,50,-,GTGGTGGCCTTCTACATCCCATTTCTCCTCATGGTGCTGGCCTATTACCG,"Exon (Htr4-201/Htr4, exon 6 of 7)",18,62324204,62467806,143603,1,Htr4-201,113263,Htr4-201;Htr4-203;Htr4-204;Htr4-202,Htr4;Htr4;Htr4;Htr4,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,15562,ENSMUSG00000026322,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16996,cg26811530,0.00011392,0.0000174,6.53844853,2.56E-10,gain,yes,-0.0000658,0.0000296,-2.222818192,0.026949096,neg,ns,0.03083232,0.008671684,3.555516995,0.000436092,pos,ns,3.360421713,-0.001336942,0.000298219,-4.483094784,0.0000104,neg,ns,0.282387785,Mllt3,Mllt3_Intron,4,87785640,87785689,87785640,87785641,50,+,CGGGTGTCAGTGACCCGCCTCAAGTTACTGAGTGGCTGCCCAGAGAGGGC,"Intron (Mllt3-201/Mllt3, intron 8 of 10)",4,87769925,88033364,263440,2,Mllt3-201,247675,Mllt3-201;Mllt3-202;Mllt3-208;Mllt3-207,Mllt3;Mllt3;Mllt3;Mllt3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,13,70122,ENSMUSG00000028496,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1020,cg21992250,-0.0000461,0.000016,-2.876163156,0.004304362,loss,ns,0.0000605,0.0000272,2.22259466,0.026964342,pos,ns,-0.001445859,0.007973969,-0.181322408,0.856233013,neg,ns,0.067408031,0.00028204,0.000274224,1.028502108,0.30451551,pos,ns,0.67408998,Slc15a3,Slc15a3_Exon,19,10843334,10843383,10843334,10843335,50,+,CGCTCAGCCTGCTGCTCTACCTGGCCGCCTCGGGCCTGCTGCCCGCCACC,"Exon (Slc15a3-204/Slc15a3, exon 2 of 2)",19,10839727,10843347,3621,1,Slc15a3-204,3607,Slc15a3-204;Slc15a3-201;Slc15a3-202;Slc15a3-203,Slc15a3;Slc15a3;Slc15a3;Slc15a3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,65221,ENSMUSG00000024737,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18258,cg12556490,0.0000242,0.00000576,4.204585955,0.0000343,gain,ns,0.0000217,0.00000978,2.22250088,0.026970741,pos,ns,0.009247554,0.002866444,3.226141119,0.001388785,pos,ns,2.857365053,-0.000155718,0.0000986,-1.579658746,0.11520482,neg,ns,0.122855265,Ap3b1,Ap3b1_Intergenic_downstream,13,94596741,94596790,94596741,94596742,50,-,CGCAGTGACTTGGGGCCAAATTGGAGTTTATATGTCAAAACAGGCTCAGA,Distal Intergenic,13,94542303,94547867,5565,1,Ap3b1-202,54487,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,33,55,11774,ENSMUSG00000021686,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
8109,cg14015269,-0.0000101,0.00000658,-1.533818821,0.126094139,loss,ns,-0.0000248,0.0000112,-2.222415034,0.026976599,neg,ns,-0.017142519,0.003275102,-5.234193296,0.000000306,neg,ns,6.514187143,0.00026983,0.00011263,2.39570551,0.017181188,pos,ns,0.765529781,Ebf1,Ebf1_Intron,11,44750625,44750674,44750673,44750674,50,-,AATTTGCCGGCAGTGGCAGTGTTAGGCCGACACAGTAAAACAAGATAACG,"Intron (Ebf1-203/Ebf1, intron 6 of 15)",11,44617317,45004995,387679,1,Ebf1-203,133308,Ebf1-203;Ebf1-202;Ebf1-201,Ebf1;Ebf1;Ebf1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,80,13591,ENSMUSG00000057098,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15539,cg15658468,-0.0000107,0.00000477,-2.247313821,0.025323047,loss,ns,0.000018,0.0000081,2.221256842,0.027055744,pos,ns,0.00568681,0.00237296,2.396504971,0.017144451,pos,ns,1.765876407,-0.000139218,0.0000816,-1.705977726,0.089013808,neg,ns,0.906000456,Gm50297,Gm50297_Intergenic_downstream,18,81672728,81672777,81672728,81672729,50,-,CGGGAGATTTGTGAGGTTCAAGCTGTTTATTCTTTAAATTATATGATTGA,Distal Intergenic,18,82261062,82261262,201,2,Gm50297-201,588534,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,17,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17520,cg12722365,0.0000216,0.00000552,3.916222457,0.000110664,gain,ns,-0.0000208,0.00000938,-2.221189496,0.027060353,neg,ns,-0.003654532,0.002746667,-1.330533456,0.184320466,neg,ns,0.73442644,0.000150032,0.0000945,1.588350761,0.113226406,pos,ns,0.894977991,Gm2497,Gm2497_Intergenic_downstream,9,90700675,90700724,90700723,90700724,50,-,TGAATGCCCAAGCTGAATAGCCATTTGAATGAAGGCTTTAGTTTGATTCG,Distal Intergenic,9,90732924,90733524,601,2,Gm2497-201,32849,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,9,100039925,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18833,cg12091099,-0.0000213,0.0000102,-2.085917973,0.037803397,loss,ns,-0.0000384,0.0000173,-2.22107958,0.027067875,neg,ns,-0.013211159,0.005070901,-2.605288474,0.009622456,neg,ns,2.01671405,-0.0000377,0.000174388,-0.216424779,0.828799001,neg,ns,0.821558624,Gk2,Gk2_Intron,5,97594211,97594260,97594211,97594212,50,+,CGTATTGCTCTGAAAGAAACTGACATGAAGTAGTTTCAAATTAACCACTG,"Intron (4930467D21Rik-202/4930467D21Rik-202, intron 4 of 4)",5,97455142,97457021,1880,2,Gk2-201,-137190,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,13,14626,ENSMUSG00000050553,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9143,cg06904135,0.000008,0.00000291,2.747307516,0.006360282,gain,ns,0.000011,0.00000495,2.220772038,0.027088933,pos,ns,0.001455024,0.001450042,1.003435369,0.31643344,pos,ns,0.499717627,0.0000138,0.0000499,0.27610441,0.782651849,pos,ns,0.063726125,Galnt12,Galnt12_fiveUTR,4,47092200,47092249,47092248,47092249,50,-,GGTGCGGCTGCAGCTGCAGGGCGAGGAGCTGCGGCTGCAGGAGGAGAGCG,Promoter (<=1kb),4,47091909,47123070,31162,1,Galnt12-201,291,Galnt12-201;Galnt12-202,Galnt12;Galnt12,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,1,230145,ENSMUSG00000039774,conserved gene but different region,4,47091849,47092460,612,*,612,67,0.718954248,0.889534884,0.109477124,7.06E-54,CpGisland,TRUE,U3,Pr-B
5209,cg06387614,0.0000445,0.00000695,6.409661579,5.42E-10,gain,yes,-0.0000262,0.0000118,-2.220739115,0.027091188,neg,ns,0.026198261,0.003458495,7.575046275,4.17E-13,pos,yes,12.38022358,-0.000715227,0.000118937,-6.013475779,5.10E-09,neg,yes,0.897829752,Pten,Pten_Exon,19,32811779,32811828,32811827,32811828,50,+,ACTGTTGTTTCACAAGATGATGTTTGAAACTATTCCAATGTTCAGTGGCG,"Exon (Pten-201/Pten, exon 6 of 9)",19,32757497,32826160,68664,1,Pten-201,54282,Pten-201;Pten-203,Pten;Pten,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,6,19211,ENSMUSG00000013663,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10155,cg00054169,0.000208637,0.0000198,10.54499596,2.03E-22,gain,yes,-0.0000746,0.0000336,-2.220613583,0.027099789,neg,ns,0.028672125,0.009847422,2.911637641,0.00385616,pos,ns,2.41384498,-0.001160732,0.000338652,-3.427506256,0.00069143,neg,ns,0.40053074,Gm28308,Gm28308_fiveUTR,6,52204384,52204433,52204384,52204385,50,-,CGCGGTCGTTTGTGCGTCTATAGCACCCTTGCACAATTTATGATGAATTA,5' UTR,6,52163359,52213339,49981,2,Gm28308-201,8906,Gm28308-201;Hoxa3-201;Hoxa3-203;Hoxa5-201;Hoxa6-201,Gm28308;Hoxa3;Hoxa3;Hoxa5;Hoxa6,0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,21,103,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
943,cg26509965,0.0000654,0.00000492,13.30555768,2.90E-32,gain,yes,-0.0000185,0.00000835,-2.220604373,0.02710042,neg,ns,0.009575926,0.002446853,3.913567844,0.00011183,pos,ns,3.951440391,-0.000194409,0.0000841,-2.310346011,0.021525347,neg,ns,0.125396919,Gata3,Gata3_Promoter,2,9896195,9896244,9896195,9896196,50,-,CGTTACCGCTGCGAGCTCCTAAATGAGTGTCAAGGAGGCAAATATCAAAT,Promoter (6-7kb),2,9874702,9890034,15333,2,Gata3-202,-6210,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,12,21,14462,ENSMUSG00000015619,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
12868,cg11667953,-0.0000506,0.0000162,-3.116943639,0.00199859,loss,ns,0.0000612,0.0000276,2.220523139,0.027105986,pos,ns,0.008986111,0.008075622,1.11274538,0.266679924,pos,ns,0.574009677,-0.000383262,0.00027772,-1.380030764,0.168571608,neg,ns,0.459638835,Gm47010,Gm47010_Intergenic_downstream,14,67569494,67569543,67569542,67569543,50,-,GAATGCAGTGTTCAATAAAGAAACACACTCCACCTTTCAGCTTCAAGCCG,Distal Intergenic,14,67588363,67588792,430,2,Gm47010-201,19298,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,8,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7794,cg09371761,-0.00000852,0.00000648,-1.315395635,0.189349029,loss,ns,0.0000244,0.000011,2.220466905,0.02710984,pos,ns,0.009561999,0.003225558,2.964447938,0.003267452,pos,ns,2.485790796,-0.000257988,0.000110927,-2.325749659,0.020676773,neg,ns,0.911577241,Melk,Melk_Intron,4,44319599,44319648,44319647,44319648,50,+,CCGAGTCGCAGTGTAATACAGTCTGCTGGTTGAATCTAATTAAGGTGTCG,"Intron (Melk-201/Melk, intron 8 of 17)",4,44300876,44364675,63800,1,Melk-201,18723,Melk-201;Melk-203;Melk-202;Melk-204,Melk;Melk;Melk;Melk,0;0;16031;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,3,17279,ENSMUSG00000035683,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9648,cg02762813,0.00000145,0.00000493,0.294490164,0.76858048,gain,ns,0.0000186,0.00000838,2.220219708,0.027126788,pos,ns,0.005206868,0.002456031,2.120033202,0.034797434,pos,ns,1.458452778,-0.000159555,0.0000845,-1.889057041,0.059817384,neg,ns,0.909103668,Cnot6,Cnot6_Exon,11,49683231,49683280,49683231,49683232,50,+,CGGGTCGCATATTTATCACAAAGAACATTATAGCACATGACAGAAAACAA,"Exon (Cnot6-203/Cnot6, exon 7 of 12)",11,49671503,49712723,41221,2,Cnot6-203,29443,Cnot6-203;Cnot6-202;Cnot6-201;Cnot6-204;Cnot6-205;Gm12191-201,Cnot6;Cnot6;Cnot6;Cnot6;Cnot6;Gm12191,0;0;0;0;-506;-4174,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,5,104625,ENSMUSG00000020362,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
576,cg25670428,0.0000116,0.00000595,1.95417408,0.051579493,gain,ns,-0.0000224,0.0000101,-2.21974572,0.02715931,neg,ns,0.013712698,0.002959957,4.632734887,0.00000532,pos,ns,5.27412206,-0.000435031,0.000101793,-4.273693947,0.0000256,neg,ns,0.766831458,Esrra,Esrra_fiveUTR,19,6914173,6914222,6914173,6914174,50,-,CGGACAGCTGTACTCGATGCTCCCTGCCAGGAAGAGGCAGGGCTCCAGTG,5' UTR,19,6910977,6921051,10075,2,Esrra-203,6829,Esrra-203;Esrra-206;Esrra-201;Esrra-205;Esrra-204;Esrra-202;Prdx5-202;Prdx5-205;Prdx5-201;Prdx5-204;Trmt112-201;Trmt112-202;Trmt112-203;Trmt112-204,Esrra;Esrra;Esrra;Esrra;Esrra;Esrra;Prdx5;Prdx5;Prdx5;Prdx5;Trmt112;Trmt112;Trmt112;Trmt112,0;0;0;0;0;7545;-4195;-4643;-4067;-4556;4475;4426;4020;4009,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,4,26379,ENSMUSG00000024955,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24745,cg00290302,-0.0000206,0.00000761,-2.710962081,0.007082728,loss,ns,0.0000287,0.0000129,2.219605283,0.027168953,pos,ns,0.00585445,0.003788042,1.545508128,0.123243616,pos,ns,0.909235568,-0.000308673,0.00013027,-2.369476211,0.018425574,neg,ns,0.6900755,R3hdm1,R3hdm1_Exon,1,128162202,128162251,128162202,128162203,50,+,CGGCCATTGCAGTCATTTGGACAGACAGGAAAAAGGTCTAAGGTATAGTA,"Exon (R3hdm1-208/R3hdm1, exon 4 of 16)",1,128103301,128183131,79831,1,R3hdm1-215,58901,R3hdm1-215;R3hdm1-209;R3hdm1-208;R3hdm1-201;R3hdm1-205;R3hdm1-211,R3hdm1;R3hdm1;R3hdm1;R3hdm1;R3hdm1;R3hdm1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,7,226412,ENSMUSG00000056211,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7457,cg17224602,0.000116465,0.00000953,12.22579514,2.56E-28,gain,yes,-0.0000359,0.0000162,-2.21934088,0.027187115,neg,ns,0.010337645,0.004741254,2.180360966,0.029982478,pos,ns,1.52313248,-0.000247596,0.000163051,-1.518515314,0.129903704,neg,ns,0.040964345,Pou3f3,Pou3f3_Promoter,1,42695584,42695633,42695584,42695585,50,-,CGCTCTGCCTAAATTAAAAAGCAACCAATCGGAACGGCCGGAAGGGGGGC,Promoter (<=1kb),1,42694925,42703176,8252,1,Pou3f3-202,659,Pou3f3-202;Pou3f3-201,Pou3f3;Pou3f3,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,3,37,18993,ENSMUSG00000045515,conserved gene and region,1,42695391,42695839,449,*,449,33,0.634743875,0.816633598,0.073496659,6.76E-21,CpGisland,TRUE,U3,Pr-B
11996,cg09165888,-0.00000477,0.00000528,-0.9040583,0.366666496,loss,ns,0.0000199,0.00000897,2.219223808,0.02719516,pos,ns,0.006099446,0.002626553,2.322224547,0.020868339,pos,ns,1.680512119,-0.000286416,0.0000903,-3.170876004,0.001671811,neg,ns,0.080070634,Adrb2,Adrb2_Exon,18,62179569,62179618,62179569,62179570,50,-,CGAACTTGGCAATGGCTGTGATGACCAGCACATTGCCAAACACGATGGCC,Promoter (<=1kb),18,62177816,62179959,2144,2,Adrb2-201,341,Adrb2-201,Adrb2,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,11555,ENSMUSG00000045730,conserved gene and region,18,62179489,62180164,676,*,676,53,0.653846154,0.733939692,0.078402367,1.22E-34,CpGisland,TRUE,U1,Pr-A
23691,cg04235854,-0.0000395,0.0000131,-3.011299307,0.002815306,loss,ns,-0.0000495,0.0000223,-2.218829368,0.02722228,neg,ns,0.061298917,0.006533833,9.3817704,1.43E-18,pos,yes,17.84498993,-0.00243927,0.000224698,-10.85577422,1.75E-23,neg,yes,0.689607351,Cx3cr1,Cx3cr1_Exon,9,119902385,119902434,119902385,119902386,50,+,CGAGACTCTATCATAAGAATATGGAGTGTCAATCAGCACAAGGTAATGCA,"Exon (Wdr48-201/Wdr48, exon 2 of 19)",9,119901616,120068283,166668,2,Cx3cr1-202,165849,Cx3cr1-202;Wdr48-201;Wdr48-208;Wdr48-205;Wdr48-203,Cx3cr1;Wdr48;Wdr48;Wdr48;Wdr48,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,13051,ENSMUSG00000052336,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23175,cg27181007,-0.00000177,0.00000351,-0.504740603,0.614099638,loss,ns,-0.0000132,0.00000596,-2.218620354,0.027236661,neg,ns,-0.002616112,0.001746329,-1.498064122,0.135134137,neg,ns,0.869234927,0.0000562,0.0000601,0.936396934,0.349797755,pos,ns,0.952454509,Rnf220,Rnf220_Intron,4,117380222,117380271,117380270,117380271,50,+,CGGATTTATCACCACAGTTGTTTCGAATTCCCCTTGGTGAGGTTTGGGCG,"Intron (Rnf220-201/Rnf220, intron 2 of 14)",4,117271463,117497052,225590,2,Rnf220-201,116781,Rnf220-201;Rnf220-202;Rnf220-207,Rnf220;Rnf220;Rnf220,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11786,cg05407740,0.000219833,0.0000273,8.053644527,1.74E-14,gain,yes,-0.00010288,0.0000464,-2.218563891,0.027240547,neg,ns,0.100616345,0.013585531,7.406140122,1.24E-12,pos,yes,11.90699637,-0.005077716,0.000467205,-10.86827672,1.59E-23,neg,yes,0.611889019,Mbnl1,Mbnl1_Exon,3,60614662,60614711,60614710,60614711,50,-,GCTCGCTGCCTGCTAATTAAGACTCAGTCGGCTGTCAAATCACTGAAGCG,"Exon (Mbnl1-216/Mbnl1, exon 5 of 7)",3,60473074,60621458,148385,1,Mbnl1-216,141588,Mbnl1-216;Mbnl1-211;Mbnl1-201;Mbnl1-202;Mbnl1-203;Mbnl1-218;Mbnl1-219;Mbnl1-214;Mbnl1-207;Mbnl1-205;Mbnl1-212;Mbnl1-210;Mbnl1-215;Mbnl1-223;Mbnl1-206,Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1,0;0;0;0;0;0;0;0;0;0;0;19021;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,19,36,56758,ENSMUSG00000027763,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19162,cg22591444,-0.0000212,0.00000674,-3.150737245,0.001787574,loss,ns,0.0000254,0.0000115,2.218556071,0.027241085,pos,ns,-0.003581427,0.003355972,-1.067180195,0.286720848,neg,ns,0.542540728,0.0000903,0.000115412,0.782680607,0.434412161,pos,ns,0.659428773,Mrps22,Mrps22_Intergenic_upstream,9,98710237,98710286,98710237,98710238,50,-,CGAGGGGTGAGGTGCTGGCTTTCCACTGGGATTGCTTGGAGCAATTTTCA,Distal Intergenic,9,98588730,98601660,12931,2,Mrps22-201,-108626,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,6,64655,ENSMUSG00000032459,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7915,cg17826245,0.0000176,0.0000024,7.352652838,1.74E-12,gain,yes,-0.00000904,0.00000407,-2.218520395,0.027243541,neg,ns,-0.000584324,0.001193208,-0.489708665,0.624686426,neg,ns,0.204337931,0.000054,0.000041,1.315678834,0.189254031,pos,ns,0.933864448,Gtdc1,Gtdc1_Intron,2,44632722,44632771,44632770,44632771,50,-,TGCCTCGGAATTAGAATGTCTTTGATGTCCCCACAAGAGTTTTTTGCCCG,"Intron (Gtdc1-203/Gtdc1, intron 6 of 10)",2,44564412,44861622,297211,2,Gtdc1-203,228851,Gtdc1-203;Gtdc1-201;Gtdc1-205;Gtdc1-210;Gtdc1-204;Gtdc1-211,Gtdc1;Gtdc1;Gtdc1;Gtdc1;Gtdc1;Gtdc1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,43,227835,ENSMUSG00000036890,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27763,cg25437099,0.0000682,0.00000515,13.22772437,5.62E-32,gain,yes,-0.0000194,0.00000875,-2.218441561,0.027248968,neg,ns,0.005007963,0.002564581,1.952740971,0.051749959,pos,ns,1.28608999,0.0000164,0.0000882,0.186511851,0.852165381,pos,ns,0.083362357,Hlx,Hlx_Promoter,1,184735264,184735313,184735312,184735313,50,+,TTTGTGCAACTTTATCTCCACCGGCAAGTTGCTCGGGTGACGCAAATCCG,Promoter (2-3kb),1,184727140,184732619,5480,2,Hlx-201,-2645,Hlx-201;Hlx-202,Hlx;Hlx,-2645;-3666,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,3,15284,ENSMUSG00000039377,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
4167,cg06700189,0.00000311,0.0000061,0.510880004,0.609798711,gain,ns,0.000023,0.0000104,2.218434874,0.027249428,pos,ns,0.002744911,0.003033622,0.904829532,0.366258359,pos,ns,0.436212455,0.0000412,0.000104326,0.395323719,0.69287589,pos,ns,0.702606389,Itpr3,Itpr3_Exon,17,27116002,27116051,27116050,27116051,50,+,GGGCAGCAAAGTGAGCGACTTCTTCGACCAGTCCTCCTTCCTGCACAACG,"Exon (Itpr3-201/Itpr3, exon 48 of 58)",17,27057304,27122223,64920,1,Itpr3-201,58698,Itpr3-201,Itpr3,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,16440,ENSMUSG00000042644,conserved gene and region,17,27115836,27116134,299,*,299,20,0.638795987,0.655701754,0.066889632,4.13E-12,CpGisland,TRUE,NA,NRS
5107,cg14904697,0.000009,0.00000545,1.650435387,0.099866658,gain,ns,-0.0000205,0.00000926,-2.217832242,0.027290945,neg,ns,0.01741914,0.002714079,6.418066946,5.17E-10,pos,ns,9.286908101,-0.000466638,0.0000933,-4.999496997,0.000000963,neg,yes,0.821511304,Akap8l,Akap8l_threeUTR,17,32333918,32333967,32333966,32333967,50,-,GTCCTTATCTGGGCCACGGGGTCAGCTTTGTCTGGAGAGCCCAGGGGCCG,3' UTR,17,32321424,32350575,29152,2,Akap8l-206,16608,Akap8l-206;Akap8l-207;Akap8l-201;Akap8l-209;Akap8l-205;Akap8l-212;Akap8l-204;Akap8l-210;Akap8l-208;Akap8l-211;Akap8l-213;Akap8l-202;Akap8l-203,Akap8l;Akap8l;Akap8l;Akap8l;Akap8l;Akap8l;Akap8l;Akap8l;Akap8l;Akap8l;Akap8l;Akap8l;Akap8l,0;0;0;0;-1019;-437;0;0;-444;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,7,54194,ENSMUSG00000002625,conserved gene and region,17,32333847,32333977,131,*,131,14,0.748091603,0.771885522,0.106870229,2.07E-11,CpGisland,TRUE,U10,Tr-S
14410,cg19868479,-0.00000516,0.00000723,-0.713707912,0.475944791,loss,ns,0.0000272,0.0000123,2.217726714,0.027298221,pos,ns,0.002725024,0.003599096,0.757141131,0.449540399,pos,ns,0.347231274,-0.000097,0.000123773,-0.78383946,0.433732799,neg,ns,0.6439547,Asic4,Asic4_Exon,1,75469383,75469432,75469383,75469384,50,-,CGGGTGCAGATCCACAGCCAGGAGGAGCCGCCCTACATCCACCAGCTGGG,"Exon (Asic4-202/Asic4, exon 3 of 9)",1,75450436,75474340,23905,1,Asic4-202,18947,Asic4-202;Asic4-201,Asic4;Asic4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,11,241118,ENSMUSG00000033007,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25310,cg16232794,-0.000000431,0.000000323,-1.333921694,0.183208674,loss,ns,0.00000122,0.000000549,2.217638352,0.027304314,pos,ns,0.0000247,0.000160795,0.153471664,0.878126188,pos,ns,0.056443071,0.0000021,0.00000553,0.3796256,0.704483282,pos,ns,0.988239007,Dock1,Dock1_Exon,7,134756836,134756885,134756836,134756837,50,+,CGACACAAGCCGCTGAACATGTCATCCCGTTTTTCACCCAGGGTGGCAGG,"Exon (Dock1-205/Dock1, exon 12 of 27)",7,134670654,134876943,206290,1,Dock1-205,86182,Dock1-205;Dock1-206;Dock1-201;Dock1-204;Dock1-203,Dock1;Dock1;Dock1;Dock1;Dock1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,5,330662,ENSMUSG00000058325,conserved gene and region,7,134756817,134756864,48,*,48,7,0.604166667,1.647058824,0.145833333,0.000000957,CpGisland,TRUE,U10,Tr-S
23155,cg19329104,-0.00000217,0.00000441,-0.493504319,0.622005726,loss,ns,0.0000166,0.00000748,2.217606555,0.027306507,pos,ns,0.003263459,0.002192805,1.488257709,0.137699463,pos,ns,0.861067755,-0.000057,0.0000754,-0.756191696,0.450108522,neg,ns,0.511129826,Cpsf6,Cpsf6_Exon,10,117362097,117362146,117362097,117362098,50,+,CGTCCTCTACCACCTTGTGGAAATGCTGCACGGGAACTGCCTCCTGGAGG,"Exon (Cpsf6-201/Cpsf6, exon 5 of 10)",10,117344673,117376970,32298,2,Cpsf6-201,14824,Cpsf6-201;Cpsf6-207;Cpsf6-206;Cpsf6-204;Cpsf6-208;Cpsf6-205;Cpsf6-203,Cpsf6;Cpsf6;Cpsf6;Cpsf6;Cpsf6;Cpsf6;Cpsf6,0;0;0;-1153;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,432508,ENSMUSG00000055531,conserved gene but different region,10,117362091,117362150,60,*,60,7,0.683333333,1.029411765,0.116666667,0.00000466,CpGisland,TRUE,U10,Tr-S
5352,cg01156745,-0.0000635,0.0000174,-3.647031648,0.000311077,loss,ns,0.0000656,0.0000296,2.216960143,0.027351123,pos,ns,0.043311184,0.008671215,4.994823016,0.000000985,pos,ns,6.006456008,-0.001007039,0.000298202,-3.377030635,0.000826136,neg,ns,0.910211102,Fam53a,Fam53a_Intergenic_downstream,5,33575484,33575533,33575484,33575485,50,+,CGATGGAGAAATCTCCCGGAAAATTTATATTAAAAGTCTCTGTTTGCCTA,Distal Intergenic,5,33600356,33628912,28557,2,Fam53a-203,53379,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,13,13,74504,ENSMUSG00000037339,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18769,cg25612765,-0.00000254,0.00000598,-0.423862525,0.671960033,loss,ns,0.0000225,0.0000102,2.216833878,0.027359845,pos,ns,0.006682656,0.002978452,2.243667707,0.025559541,pos,ns,1.592446946,-0.000190356,0.000102429,-1.858420296,0.064057059,neg,ns,0.936794435,Bcl9,Bcl9_Intron,3,97265795,97265844,97265795,97265796,50,+,CGCGTGCTGTGGCAGAGGCGTACAAACACGCTTTAATTACAATATTGTAA,"Intron (Bcl9-208/Bcl9, intron 1 of 3)",3,97216553,97297917,81365,2,Bcl9-208,32073,Bcl9-208,Bcl9,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,10,77578,ENSMUSG00000038256,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2353,cg15628325,0.00010115,0.00000949,10.65512366,8.55E-23,gain,yes,-0.0000357,0.0000161,-2.215930029,0.027422353,neg,ns,0.010110813,0.004724801,2.139944676,0.033139614,pos,ns,1.47965256,-0.000362504,0.000162486,-2.230990384,0.026396823,neg,ns,0.086078729,Tfap2d,Tfap2d_Exon,1,19104745,19104794,19104745,19104746,50,+,CGCCGCCATGACCTGTCCCTCATGAGCCATGGCTCTCAGTATGGAATGCA,"Exon (Tfap2d-201/Tfap2d, exon 2 of 8)",1,19103022,19166346,63325,1,Tfap2d-201,1723,Tfap2d-201;Tfap2d-202,Tfap2d;Tfap2d,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,14,23,226896,ENSMUSG00000042596,conserved gene and region,1,19104477,19104754,278,*,278,20,0.615107914,0.848336894,0.071942446,1.04E-12,CpGisland,TRUE,U13,Hc-P
1830,cg22448306,-0.00000549,0.00000358,-1.534592554,0.125903878,loss,ns,0.0000135,0.00000607,2.215686128,0.027439241,pos,ns,0.002838302,0.001779562,1.594943983,0.111743721,pos,ns,0.95177687,-0.00011245,0.0000612,-1.837441168,0.067101776,neg,ns,0.931311709,Foxp2,Foxp2_threeUTR,6,15438434,15438483,15438434,15438435,50,-,CGCCTCATATACTGCCAAAAATAGTGTTAGTTTCATTAATGTGAATTTTC,3' UTR,6,14901349,15441977,540629,1,Foxp2-207,537085,Foxp2-207;Foxp2-205;Foxp2-204;Foxp2-201;Foxp2-206,Foxp2;Foxp2;Foxp2;Foxp2;Foxp2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,threeUTR,10,65,114142,ENSMUSG00000029563,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9494,cg20237169,-0.00000335,0.00000333,-1.006274349,0.315068412,loss,ns,-0.0000125,0.00000565,-2.215445355,0.027455922,neg,ns,0.000612128,0.001656503,0.369530255,0.711984822,pos,ns,0.147529264,-0.0000938,0.000057,-1.646119033,0.100752657,neg,ns,0.899352397,Acvr2a,Acvr2a_threeUTR,2,48900337,48900386,48900385,48900386,50,+,TTCCAAGCATTACTTTAACCTCCCTCAACAAGGTATACCTCAGTTCCACG,3' UTR,2,48814109,48903269,89161,1,Acvr2a-201,86228,Acvr2a-201;Acvr2a-202;Orc4-201;Orc4-213;Orc4-212;Orc4-210,Acvr2a;Acvr2a;Orc4;Orc4;Orc4;Orc4,0;0;48890;9627;48845;10282,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,10,11480,ENSMUSG00000052155,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1352,cg23208789,-0.000013,0.00000602,-2.162083825,0.031376505,loss,ns,0.0000227,0.0000102,2.215392516,0.027459584,pos,ns,0.002331337,0.00299629,0.778074483,0.43711854,pos,ns,0.359400773,-0.000022,0.000103042,-0.213173927,0.831331425,neg,ns,0.854065864,Gm11847,Gm11847_Intergenic_downstream,4,12422020,12422069,12422020,12422021,50,-,CGTGCAGCCATTTTGTCATCGCTTTGGGTCATCCTTGCTCACAATTGGTT,Distal Intergenic,4,12232833,12233951,1119,1,Gm11847-201,189236,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,8,545592,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1548,cg13028739,0.0000461,0.0000133,3.464930674,0.000605116,gain,ns,0.00005,0.0000226,2.214642091,0.027511637,pos,ns,0.002590034,0.006619756,0.391258191,0.695875183,pos,ns,0.157468652,0.0000433,0.000227653,0.189988967,0.849442121,pos,ns,0.657435866,Gm11825,Gm11825_Promoter,4,13599838,13599887,13599886,13599887,50,-,GATTTCCTGTACAAATTACCCTTTGAAAGTGGCAGTGGCGCTTGGCAGCG,Promoter (6-7kb),4,13606034,13606769,736,1,Gm11825-201,-6196,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,4,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15135,cg09933587,-0.00000114,0.00000137,-0.83267958,0.405666495,loss,ns,0.00000515,0.00000233,2.214380716,0.027529787,pos,ns,0.000483512,0.000681413,0.709573112,0.478502253,pos,ns,0.320116013,-0.000031,0.0000234,-1.322087241,0.187113784,neg,ns,0.962840001,Gm48470,Gm48470_Intergenic_downstream,13,79346139,79346188,79346139,79346140,50,+,CGTACAATAAAATACAACAGTTCATCTGGCAGAAAGCAAATTAGCTTTGA,Distal Intergenic,13,79441143,79441407,265,2,Gm48470-201,95219,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,20,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25859,cg00675389,-0.00000637,0.00000625,-1.019191956,0.308906579,loss,ns,0.0000235,0.0000106,2.214329272,0.02753336,pos,ns,-0.002887711,0.003111546,-0.928062991,0.354096919,neg,ns,0.450877852,-0.0000489,0.000107006,-0.457139403,0.647891032,neg,ns,0.80559658,Morc4,Morc4_threeUTR,X,139822743,139822792,139822743,139822744,50,+,CGATCTCACGAAGCTCCAAGTGAGGGAGGACAGAAGTAAGGAGATAGCTG,3' UTR,20,139821632,139871654,50023,2,Morc4-201,48862,Morc4-201;Morc4-204;Morc4-202;Morc4-210,Morc4;Morc4;Morc4;Morc4,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,7,75746,ENSMUSG00000031434,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8806,cg07259781,-0.000000969,0.00000333,-0.2912968,0.771019145,loss,ns,0.0000125,0.00000565,2.214230173,0.027540245,pos,ns,0.004381955,0.001656165,2.645844077,0.008564398,pos,ns,2.067303179,-0.000140369,0.000057,-2.464539691,0.014261039,neg,ns,0.937340533,Lcorl,Lcorl_threeUTR,5,45775400,45775449,45775400,45775401,50,+,CGAAAGAGTGCATTTAGGTAATTTTCTGCTTGGCATTCAATCTTATCAGT,3' UTR,5,45697181,45857615,160435,2,Lcorl-202,82166,Lcorl-202;Lcorl-212;Lcorl-210;Lcorl-205;Lcorl-204;Lcorl-201;Lcorl-209;Lcorl-208;Lcorl-203;Lcorl-206;Lcorl-207,Lcorl;Lcorl;Lcorl;Lcorl;Lcorl;Lcorl;Lcorl;Lcorl;Lcorl;Lcorl;Lcorl,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,9,209707,ENSMUSG00000015882,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8124,cg22997759,0.000088,0.00000614,14.32244262,4.65E-36,gain,yes,-0.0000231,0.0000104,-2.21338796,0.027598819,neg,ns,0.005063809,0.003057351,1.656273276,0.098678285,pos,ns,1.005778407,0.0000499,0.000105142,0.474966619,0.635145214,pos,ns,0.197760511,Pax2,Pax2_fiveUTR,19,44760807,44760856,44760807,44760808,50,-,CGGACCCTGACTAATGGCCGGTCCCTGCTGTGTGTGGGGTGTTGTGTTTT,5' UTR,19,44756045,44837851,81807,1,Pax2-203,4762,Pax2-203;Pax2-201;Pax2-202,Pax2;Pax2;Pax2,0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,6,166,18504,ENSMUSG00000004231,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
18720,cg24680018,0.0000535,0.0000105,5.092588197,0.000000614,gain,yes,-0.0000395,0.0000179,-2.21325759,0.027607895,neg,ns,0.019784286,0.005233467,3.780340501,0.000187845,pos,ns,3.726199676,-0.000557394,0.000179978,-3.097002277,0.002133654,neg,ns,0.291822774,Tenm4,Tenm4_Intron,7,96904601,96904650,96904601,96904602,50,+,CGCCTGTCAATGAATTATTGATTTCTGCCCTTGGCAAGCATCGGAGATCT,"Intron (Tenm4-201/Tenm4, intron 32 of 32)",7,96171246,96908569,737324,1,Tenm4-201,733355,Tenm4-201;Tenm4-203;Tenm4-202,Tenm4;Tenm4;Tenm4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,26,23966,ENSMUSG00000048078,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9478,cg17581966,-0.00000518,0.00000349,-1.483263306,0.139020401,loss,ns,0.0000131,0.00000594,2.212347156,0.027671353,pos,ns,-0.001662818,0.001738797,-0.956303908,0.339663875,neg,ns,0.46895064,0.0000338,0.0000598,0.56533078,0.57225771,pos,ns,0.936023459,Tenm3,Tenm3_Promoter,8,48850471,48850520,48850519,48850520,50,+,CAATGAATCCAACCCTGGATCTGTATTATCCTTAGCAGATCAAAACACCG,Promoter (6-7kb),8,48646261,48843951,197691,2,Tenm3-207,-6520,NA,NA,NA,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,1,39,23965,ENSMUSG00000031561,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26037,cg22691669,-0.0000149,0.0000116,-1.285437761,0.199598811,loss,ns,0.0000436,0.0000197,2.21225473,0.027677802,pos,ns,0.017772927,0.005777993,3.075969122,0.002285186,pos,ns,2.641078507,-0.000413191,0.000198705,-2.079424305,0.038400039,neg,ns,0.659458569,Gm2574,Gm2574_Intergenic_downstream,3,143333227,143333276,143333275,143333276,50,-,TGATTTTATGCAGTCTCTCTAATTAGAAGGGCACAGCATTTGTTGAAACG,Distal Intergenic,3,142962611,142963612,1002,1,Gm2574-201,370665,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,19,100040053,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6552,cg07948593,-0.00000188,0.0000061,-0.307497235,0.758671406,loss,ns,0.0000229,0.0000104,2.21208814,0.02768943,pos,ns,0.005020753,0.003036167,1.653648238,0.099211232,pos,ns,1.003439157,-0.0000727,0.000104414,-0.696448959,0.486669573,neg,ns,0.883749742,Zfp536,Zfp536_Intron,7,37689685,37689734,37689733,37689734,50,-,TATGTTAAATTTTCCCCTGTCAATCAATTCTGCATGTCTGCATGAAACCG,"Intron (Zfp536-202/Zfp536, intron 3 of 6)",7,37479104,37769624,290521,2,Zfp536-202,79890,Zfp536-202;Zfp536-201;Zfp536-203;Zfp536-206;Zfp536-209;Zfp536-208,Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,73,112,243937,ENSMUSG00000043456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20020,cg06160165,-0.0000374,0.00000502,-7.454746763,9.07E-13,loss,yes,-0.0000189,0.00000852,-2.212082325,0.027689836,neg,ns,-0.000167845,0.002496665,-0.067227687,0.946443782,neg,ns,0.023905178,-0.000212812,0.0000859,-2.478585253,0.013722349,neg,ns,0.828081454,Zfp740,Zfp740_Exon,15,102212605,102212654,102212605,102212606,50,-,CGGACAGATCGATTACTCAGACACAAACGGATGTGCCAAGGGTGCCAGTC,"Exon (Zfp740-201/Zfp740, exon 8 of 8)",15,102203648,102215605,11958,1,Zfp740-201,8957,Itgb7-203;Itgb7-201;Itgb7-204;Zfp740-201;Zfp740-202;Zfp740-209;Zfp740-208;Zfp740-212;Zfp740-203;Zfp740-205;Zfp740-207;Zfp740-210;Zfp740-206;Zfp740-204,Itgb7;Itgb7;Itgb7;Zfp740;Zfp740;Zfp740;Zfp740;Zfp740;Zfp740;Zfp740;Zfp740;Zfp740;Zfp740;Zfp740,4419;19290;3996;0;0;0;0;0;0;7859;7825;6046;4987;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,5,68744,ENSMUSG00000046897,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8670,cg15732510,-0.0000167,0.00000512,-3.256701939,0.001252026,loss,ns,0.0000193,0.00000871,2.211200347,0.027751466,pos,ns,0.005569037,0.0025505,2.183508478,0.029747891,pos,ns,1.526543817,-0.000177332,0.0000877,-2.021763445,0.044059594,neg,ns,0.597441726,Btrc,Btrc_Exon,19,45527285,45527334,45527285,45527286,50,+,CGACTACAGTTTGATGAATTCCAGATTGTCAGTAGTTCACATGATGACAC,"Exon (Btrc-201/Btrc, exon 14 of 15)",19,45363751,45530013,166263,1,Btrc-201,163534,Btrc-201;Btrc-202;Btrc-209,Btrc;Btrc;Btrc,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,30,98,12234,ENSMUSG00000025217,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5292,cg23204463,-0.0000275,0.0000124,-2.212379553,0.027669093,loss,ns,0.0000467,0.0000211,2.21078799,0.027780321,pos,ns,0.014670018,0.006186697,2.371219642,0.018340467,pos,ns,1.736589621,-0.000448895,0.00021276,-2.109863475,0.035671279,neg,ns,0.844417917,Ranbp17,Ranbp17_Intron,11,33343382,33343431,33343382,33343383,50,+,CGGAGAAAAAAAGACTGTTTTCGATAAACAGAAAATACAGTTTGCACTCT,"Intron (Ranbp17-202/Ranbp17, intron 14 of 27)",11,33211795,33513746,301952,2,Ranbp17-202,170315,Ranbp17-202;Ranbp17-206;Ranbp17-203,Ranbp17;Ranbp17;Ranbp17,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,31,66011,ENSMUSG00000040594,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13374,cg18912526,-0.0000581,0.00000805,-7.221164784,4.01E-12,loss,yes,0.0000302,0.0000137,2.210785228,0.027780515,pos,ns,-0.001601291,0.004006559,-0.399667419,0.689676718,neg,ns,0.161354434,0.00000709,0.000137785,0.051472222,0.958982387,pos,ns,0.869358583,Nr2f2,Nr2f2_Intergenic_downstream,7,70349802,70349851,70349802,70349803,50,+,CGCCCAGCACTAACTGCTTTAAAATTACTGCATAATTAGATTTAGTTGAA,Downstream (2-3kb),7,70353074,70355237,2164,2,Nr2f2-203,5386,Nr2f2-201;Nr2f2-203;Nr2f2-202,Nr2f2;Nr2f2;Nr2f2,0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,19,69,11819,ENSMUSG00000030551,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17776,cg05411495,-0.0000221,0.000012,-1.837136696,0.067146831,loss,ns,0.0000451,0.0000204,2.210740098,0.027783674,pos,ns,0.009381216,0.005974505,1.570208145,0.117386792,pos,ns,0.930380767,-0.000443871,0.000205463,-2.160347208,0.031511821,neg,ns,0.842918232,Son,Son_threeUTR,16,91662550,91662599,91662598,91662599,50,+,AGTGAGCAACACGCAGAAGCTCGCCTACAGTTTCGTTTCCATTCACGACG,3' UTR,16,91647506,91679207,31702,1,Son-203,15044,Son-203;Son-204;Son-202;Son-208;Son-201;Son-205;Son-212;Son-207,Son;Son;Son;Son;Son;Son;Son;Son,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,14,31,20658,ENSMUSG00000022961,conserved gene and region,16,91662523,91662634,112,*,112,9,0.508928571,1.26,0.080357143,0.00000238,CpGisland,TRUE,U10,Tr-S
21608,cg09026530,-0.0000143,0.0000109,-1.309411422,0.191364676,loss,ns,0.0000411,0.0000186,2.210654309,0.027789682,pos,ns,0.00644331,0.00544382,1.183600886,0.237477905,pos,ns,0.624376792,-0.000620304,0.000187213,-3.313366585,0.001030951,neg,ns,0.755324443,Zfhx3,Zfhx3_Intron,8,108537935,108537984,108537935,108537936,50,-,CGGGCCAGCACTGTTTTGTTTTCATTATCACACGCTACTTTGCAATTTGC,"Intron (Zfhx3-204/Zfhx3, intron 4 of 15)",8,107942644,108961630,1018987,1,Zfhx3-204,595291,Zfhx3-204,Zfhx3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,114,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22376,cg19399365,0.0000209,0.0000033,6.344620375,7.89E-10,gain,yes,-0.0000124,0.0000056,-2.210354056,0.027810715,neg,ns,-0.000766386,0.001641417,-0.466905245,0.640895651,neg,ns,0.193212676,0.0000741,0.0000564,1.312256693,0.190404341,pos,ns,0.027502438,Grem1,Grem1_Promoter,2,113758895,113758944,113758895,113758896,50,-,CGCCTGGAATGCACAGCAAATCACATTTTCCGCTCCCGTTGGAGAGGGAA,Promoter (<=1kb),2,113746164,113758646,12483,2,Grem1-201,-298,Grem1-201,Grem1,-249,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,4,4,23892,ENSMUSG00000074934,conserved gene but different region,2,113758428,113758970,543,*,543,54,0.67587477,0.887953486,0.099447514,4.38E-41,CpGisland,TRUE,U13,Hc-P
2571,cg06614943,0.000162855,0.00000978,16.6571821,6.12E-45,gain,yes,-0.0000367,0.0000166,-2.210104538,0.027828204,neg,ns,0.012002146,0.004866051,2.466506503,0.014184494,pos,ns,1.848186146,-0.000231269,0.000167343,-1.382007079,0.167964541,neg,ns,0.423839466,Camk2n2,Camk2n2_threeUTR,16,20619618,20619667,20619618,20619619,50,-,CGGATATAAAAATACAAATGTGCTGAGGAAGTCCCTTAGAAAGAGGCTGA,3' UTR,16,20619215,20621287,2073,2,Camk2n2-201,1620,Camk2n2-201;Eef1akmt4-201;Eef1akmt4-202;Gm49333-202;Gm49333-201,Camk2n2;Eef1akmt4;Eef1akmt4;Gm49333;Gm49333,0;8025;8017;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,1,73047,ENSMUSG00000051146,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
11316,cg03772350,-0.0000959,0.0000515,-1.863957454,0.063272847,loss,ns,0.000193215,0.0000874,2.209991935,0.0278361,pos,ns,0.05712296,0.0256134,2.230198263,0.026449921,pos,ns,1.577575627,-0.000609012,0.000880843,-0.691396739,0.489833695,neg,ns,0.43350609,Foxa1,Foxa1_Exon,12,57542854,57542903,57542902,57542903,50,-,CAGCGTGAGCATCTTGCTGGGCGCCTGCTGGATGGCCATGGTGATGAGCG,"Exon (Foxa1-201/Foxa1, exon 2 of 2)",12,57540628,57546121,5494,2,Foxa1-201,3218,Foxa1-201;Foxa1-202,Foxa1;Foxa1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,7,15375,ENSMUSG00000035451,conserved gene and region,12,57542298,57543269,972,*,972,86,0.674897119,0.781533111,0.088477366,2.09E-60,CpGisland,TRUE,U3,Pr-B
20503,cg20142163,0.00000733,0.00000316,2.318931946,0.021048672,gain,ns,-0.0000119,0.00000537,-2.209843378,0.02784652,neg,ns,-0.001842528,0.001573887,-1.170686043,0.242624126,neg,ns,0.615066016,-0.0000732,0.0000541,-1.353165692,0.17698865,neg,ns,0.06665901,Smug1,Smug1_Intergenic_downstream,15,103146994,103147043,103146994,103146995,50,+,CGCGCGGGCTGGTTATGCATTTAAATGTTATTTAATTGGATTGCGGAGGA,Distal Intergenic,15,103153307,103158002,4696,2,Smug1-201,10959,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,12,71726,ENSMUSG00000036061,conserved gene but different region,15,103146760,103147175,416,*,416,53,0.694711539,1.056545908,0.127403846,1.14E-46,CpGisland,TRUE,U3,Pr-B
1206,cg01619705,0.00000685,0.0000118,0.57839967,0.563414269,gain,ns,0.0000445,0.0000201,2.209825996,0.027847739,pos,ns,0.02476888,0.005895326,4.20144391,0.0000347,pos,ns,4.459451027,-0.000445823,0.00020274,-2.198991518,0.028616877,neg,ns,0.720704307,Bcor,Bcor_Intron,X,12062409,12062458,12062457,12062458,50,+,CATGAGTGAAGGGTCAGGACAAGCTGCATTTTATTAACAGGATTATCACG,"Intron (Bcor-202/Bcor, intron 1 of 14)",20,12036740,12080553,43814,2,Bcor-202,18095,Bcor-202;Bcor-203;Bcor-204;Bcor-206;Bcor-201;Bcor-207;Bcor-205,Bcor;Bcor;Bcor;Bcor;Bcor;Bcor;Bcor,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,56,74,71458,ENSMUSG00000040363,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5808,cg20481374,0.00000941,0.00000335,2.812806815,0.00522451,gain,ns,-0.0000126,0.00000569,-2.209605204,0.027863233,neg,ns,0.008240257,0.001665588,4.947356402,0.00000124,pos,ns,5.907986105,-0.000267606,0.0000573,-4.671939488,0.00000445,neg,ns,0.913838806,Pank1,Pank1_Exon,19,34840894,34840943,34840942,34840943,50,-,GGTTCCCTTTGCGTCCACACATGGTCAGGTTTTTCAGTTCCAGGTGGACG,"Exon (Pank1-201/Pank1, exon 2 of 7)",19,34806940,34879455,72516,2,Pank1-201,38512,Pank1-201;Pank1-202;Pank1-204;Pank1-203,Pank1;Pank1;Pank1;Pank1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,75735,ENSMUSG00000033610,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19354,cg05770325,0.000135148,0.0000108,12.54957488,1.72E-29,gain,yes,-0.0000404,0.0000183,-2.209509089,0.02786998,neg,ns,-0.005099922,0.005359906,-0.951494663,0.34209458,neg,ns,0.465853807,0.0000542,0.000184327,0.293894228,0.769035402,pos,ns,0.56171647,Dnajc22,Dnajc22_Promoter,15,99093693,99093742,99093741,99093742,50,-,GGCGGCCAGACAAAGAGCAGCTTCGGATGGATGAGGGTCCCAGCGGATCG,Promoter (<=1kb),15,99093170,99100917,7748,1,Dnajc22-202,523,Dnajc22-202,Dnajc22,0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,6,8,72778,ENSMUSG00000038009,conserved gene and region,15,99093593,99093959,367,*,367,36,0.697547684,0.811348563,0.098092643,2.41E-27,CpGisland,TRUE,U3,Pr-B
3933,cg02197333,0.0000967,0.0000127,7.583971964,3.93E-13,gain,yes,-0.0000478,0.0000217,-2.209299143,0.027884722,neg,ns,-0.018627628,0.006344286,-2.936126581,0.003572069,neg,ns,2.447080148,0.000536612,0.000218179,2.459497097,0.014458963,pos,ns,0.717739334,Trp63,Trp63_Exon,16,25820398,25820447,25820398,25820399,50,-,CGAACCTGGGGCTCCTGAACAGCATGGACCAGCAGATTCAGAACGGCTCC,"Exon (Trp63-206/Trp63, exon 4 of 4)",16,25683763,25821318,137556,1,Trp63-206,136635,Trp63-206;Trp63-207;Trp63-202;Trp63-208;Trp63-203;Trp63-204;Trp63-201;Trp63-205,Trp63;Trp63;Trp63;Trp63;Trp63;Trp63;Trp63;Trp63,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,8,22061,ENSMUSG00000022510,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22919,cg11019398,-0.00000811,0.00000496,-1.635538753,0.102951059,loss,ns,0.0000186,0.00000842,2.208829866,0.027917699,pos,ns,0.004893881,0.002467326,1.983475278,0.048196365,pos,ns,1.316985718,-0.000105318,0.0000849,-1.241213217,0.215465393,neg,ns,0.898985252,Meis2,Meis2_Intergenic_upstream,2,116201327,116201376,116201375,116201376,50,+,TTCTTTAACAAAGAGAACATTATTTCAGACTCTAACATTTCTGTCTGCCG,Distal Intergenic,2,115863064,116065839,202776,2,Meis2-206,-135488,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,97,17536,ENSMUSG00000027210,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16093,cg15152195,0.00000386,0.00000513,0.752364053,0.452403051,gain,ns,-0.0000192,0.00000871,-2.208729818,0.027924734,neg,ns,-0.007845953,0.002552269,-3.074108445,0.002299057,neg,ns,2.638450277,0.000199836,0.0000878,2.276749483,0.023482505,pos,ns,0.892193382,Acaca,Acaca_Intron,11,84384054,84384103,84384054,84384055,50,+,CGCAGGGCCGCAGTTCATGCTGACTCTAGCAGAAGCAGAGAGAGCTCCAT,"Intron (Acaca-202/Acaca, intron 52 of 55)",11,84173122,84401651,228530,1,Acaca-202,210932,Acaca-202;Acaca-201,Acaca;Acaca,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,28,28,107476,ENSMUSG00000020532,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18916,cg25209681,-0.0000351,0.0000138,-2.535323772,0.011725585,loss,ns,0.0000519,0.0000235,2.208596703,0.027934096,pos,ns,0.00705793,0.006890548,1.024291585,0.30649619,pos,ns,0.513574919,-0.000576699,0.000236965,-2.433683006,0.015510783,neg,ns,0.662796907,Dach1,Dach1_Intron,14,97891581,97891630,97891581,97891582,50,+,CGAAAAAACTAAACAACCTGCCAAATAAAGGTCTGAGGTTATTATGAAAA,"Intron (Dach1-201/Dach1, intron 6 of 10)",14,97786853,98169543,382691,2,Dach1-201,277913,Dach1-201;Dach1-202;Dach1-203,Dach1;Dach1;Dach1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,76,13134,ENSMUSG00000055639,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15411,cg22042302,-0.0000157,0.00000201,-7.802182676,9.39E-14,loss,yes,0.00000754,0.00000341,2.208394077,0.027948353,pos,ns,-0.001443181,0.001000181,-1.442919562,0.150052791,neg,ns,0.823755923,0.00000483,0.0000344,0.140380671,0.888450397,pos,ns,0.960410038,Gab1,Gab1_Intron,8,80798370,80798419,80798370,80798371,50,+,CGGAAATAACATGGTAACGATATTTTGAGAGGTTCCTGGAATCAAAACAC,"Intron (Gab1-202/Gab1, intron 2 of 10)",8,80764438,80880519,116082,2,Gab1-202,82100,Gab1-202;Gab1-201;Gab1-203,Gab1;Gab1;Gab1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,14388,ENSMUSG00000031714,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16982,cg14556391,0.000138494,0.0000205,6.748383391,7.35E-11,gain,yes,-0.000077,0.0000349,-2.207969763,0.027978228,neg,ns,0.018527313,0.010214308,1.81385893,0.070666186,pos,ns,1.150788349,-0.000481656,0.000351269,-1.371188442,0.171307991,neg,ns,0.361793009,Kcnk12,Kcnk12_Exon,17,87746301,87746350,87746301,87746302,50,-,CGCAGCATCCAGTTGAGCACCTGCTTGATGAGGATGGAGATGACGTTGAA,"Exon (Kcnk12-201/Kcnk12, exon 2 of 2)",17,87745801,87797994,52194,2,Kcnk12-201,51644,Kcnk12-201,Kcnk12,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,210741,ENSMUSG00000050138,mapped to different genes,17,87745827,87746302,476,*,476,68,0.707983193,1.145364473,0.142857143,1.02E-63,CpGisland,TRUE,U3,Pr-B
24068,cg26245705,0.0000102,0.00000232,4.422724743,0.0000135,gain,ns,-0.00000869,0.00000394,-2.207967371,0.027978396,neg,ns,0.002400184,0.001152856,2.081945856,0.038167409,pos,ns,1.418307322,-0.000064,0.0000396,-1.614046932,0.107534632,neg,ns,0.040325382,Zic5,Zic5_Intron,14,122450754,122450803,122450754,122450755,50,+,CGCTCCTCGCTGCTAATTACAAATAAATGATGATGTGCTCACTAAGTAAT,"Intron (Gm5089-201/Gm5089-201, intron 1 of 2)",14,122459193,122460021,829,2,Zic5-202,9218,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,26,65100,ENSMUSG00000041703,mapped to different genes,14,122450709,122450762,54,*,54,8,0.796296296,0.935064935,0.148148148,9.03E-08,CpGisland,TRUE,U3,Pr-B
11464,cg13828375,-0.00000342,0.00000162,-2.113461939,0.035359951,loss,ns,-0.00000607,0.00000275,-2.207934778,0.027980692,neg,ns,0.001955445,0.000805876,2.426485446,0.015815868,pos,ns,1.800906963,-0.000103286,0.0000277,-3.726861386,0.000230379,neg,ns,0.95641848,Hnrnpk,Hnrnpk_fiveUTR,13,58397878,58397927,58397926,58397927,50,+,GGCAACGAGCACATTTTTGGGCATAGCCAACCAGGGTTTTCACATGGGCG,5' UTR,13,58391142,58403343,12202,2,Hnrnpk-202,5416,Hnrnpk-202;Hnrnpk-224;Hnrnpk-221;Hnrnpk-232;Hnrnpk-216;Hnrnpk-201;Hnrnpk-205;Hnrnpk-217;Hnrnpk-206;Hnrnpk-209;Hnrnpk-213;Hnrnpk-227;Hnrnpk-234;Hnrnpk-233;Hnrnpk-228;Hnrnpk-214;Hnrnpk-215;Hnrnpk-211;Hnrnpk-208;Hnrnpk-212;Hnrnpk-231;Hnrnpk-230;Hnrnpk-203;Hnrnpk-218;Hnrnpk-226;Hnrnpk-207;Hnrnpk-219;Hnrnpk-225;Hnrnpk-229;Hnrnpk-223;Hnrnpk-220;Hnrnpk-210;Hnrnpk-204;Hnrnpk-222;Rmi1-205;Rmi1-201;Rmi1-204,Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Rmi1;Rmi1;Rmi1,0;0;0;0;0;0;0;-4010;-3093;-3903;-2680;-3794;-3989;-3708;-3182;0;-2158;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;4575;4128;-4321;-4336;-4773,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,10,19,15387,ENSMUSG00000021546,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1864,cg19115985,-0.0000156,0.00000848,-1.836291884,0.067271973,loss,ns,0.0000318,0.0000144,2.207919796,0.027981748,pos,ns,-0.004967227,0.004220985,-1.176793471,0.24018074,neg,ns,0.619461822,0.000173859,0.000145159,1.197713324,0.231943607,pos,ns,0.836092067,Psat1,Psat1_Intergenic_downstream,19,15692730,15692779,15692778,15692779,50,-,CATTCAGCATTTACAAAGTATAATTACACAATAGTGTCTGACATTTAACG,Distal Intergenic,19,15905130,15909712,4583,2,Psat1-204,216982,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,14,17,107272,ENSMUSG00000024640,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1795,cg13456081,0.0000921,0.0000129,7.118458259,7.63E-12,gain,yes,-0.0000485,0.000022,-2.207667559,0.027999522,neg,ns,0.013825599,0.006439653,2.146947707,0.032572915,pos,ns,1.487143374,-0.000615374,0.000221459,-2.778724372,0.005790237,neg,ns,0.163358761,Foxp2,Foxp2_Intron,6,15285400,15285449,15285448,15285449,50,-,TCTTTTCATAATTGATCAGGGGATGACTGCCTTCCCTGAGGGTTAAGACG,"Intron (Foxp2-207/Foxp2, intron 4 of 18)",6,14901349,15441977,540629,1,Foxp2-207,384051,Foxp2-207;Foxp2-213;Foxp2-208;Foxp2-211;Foxp2-205;Foxp2-204;Foxp2-201;Foxp2-210;Foxp2-214;Foxp2-212;Foxp2-209;Foxp2-202;Foxp2-218,Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,38,65,114142,ENSMUSG00000029563,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21725,cg13294690,0.00000195,0.00000481,0.405788281,0.685178108,gain,ns,0.000018,0.00000817,2.207147893,0.028036172,pos,ns,0.006195841,0.002394697,2.587317361,0.010127664,pos,ns,1.994490731,-0.0000148,0.0000824,-0.179250684,0.857857968,neg,ns,0.126404297,Slitrk1,Slitrk1_fiveUTR,14,108913288,108913337,108913336,108913337,50,-,AGCAATTCATCCCCGATCTCATCACAAAGTAACAGCGACCATCCTGCTCG,Promoter (<=1kb),14,108908800,108914158,5359,2,Slitrk1-201,821,Slitrk1-201,Slitrk1,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,7,17,76965,ENSMUSG00000075478,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
24976,cg16774566,0.000000506,0.00000124,0.40658081,0.684596443,gain,ns,-0.00000466,0.00000211,-2.206786316,0.028061697,neg,ns,0.000587002,0.000619085,0.948178115,0.343777338,pos,ns,0.463722756,-0.0000362,0.0000213,-1.699836173,0.090164796,neg,ns,0.96989903,Pum1,Pum1_Exon,4,130762969,130763018,130762969,130762970,50,+,CGGGAGATTGCTGGACATATAATGGAATTTTCCCAAGACCAGCATGGGTC,"Exon (Pum1-201/Pum1, exon 15 of 22)",4,130663321,130781564,118244,1,Pum1-201,99648,Pum1-201;Pum1-204;Pum1-205;Pum1-203;Pum1-202,Pum1;Pum1;Pum1;Pum1;Pum1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,8,80912,ENSMUSG00000028580,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6639,cg05316560,-0.0000173,0.00000678,-2.557920569,0.011005379,loss,ns,-0.0000254,0.0000115,-2.206452261,0.028085297,neg,ns,-0.007718583,0.003373023,-2.28832778,0.022791162,neg,ns,1.642233533,0.000222208,0.000115998,1.915621122,0.05633308,pos,ns,0.891724398,Uri1,Uri1_Intergenic_downstream,7,37896692,37896741,37896740,37896741,50,-,AAACTACTCAACCATAAAGTTGCTATAGAAGATATGCTTGTTCTGATTCG,Distal Intergenic,7,37961301,37962528,1228,2,Uri1-203,65836,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,19,27,19777,ENSMUSG00000030421,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15312,cg24080303,0.0000198,0.0000132,1.49951166,0.134758629,gain,ns,-0.0000494,0.0000224,-2.205685767,0.028139513,neg,ns,0.030112932,0.006561679,4.589211402,0.00000647,pos,ns,5.189038916,-0.001718956,0.000225656,-7.617608517,3.16E-13,neg,yes,0.751967594,Dazap1,Dazap1_Exon,10,80280954,80281003,80280954,80280955,50,+,CGAACAATCAGTGGACCAGGCTGTCAACATGCATTTTCACGACATCATGG,"Exon (Dazap1-207/Dazap1, exon 7 of 7)",10,80261486,80281005,19520,1,Dazap1-207,19468,Dazap1-207;Dazap1-203;Dazap1-202;Dazap1-201;Dazap1-205;Dazap1-204;Dazap1-206,Dazap1;Dazap1;Dazap1;Dazap1;Dazap1;Dazap1;Dazap1,0;0;0;0;15830;0;-1864,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,6,70248,ENSMUSG00000069565,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U5,En-Sd
25941,cg07527263,-0.0000154,0.00000875,-1.755154385,0.080220673,loss,ns,-0.0000328,0.0000149,-2.205570721,0.028147659,neg,ns,0.011160281,0.0043548,2.562753871,0.010856559,pos,ns,1.964307819,0.000116381,0.000149761,0.777113084,0.437684648,pos,ns,0.952434405,Spen,Spen_Exon,4,141517196,141517245,141517196,141517197,50,-,CGCTCTCGAGGATCTCTATAGTAATCCTGATCGTAATGTCTTGTCCGATC,"Exon (Spen-201/Spen, exon 3 of 15)",4,141467890,141538449,70560,2,Spen-201,21204,Spen-201;Spen-202;Spen-203;Spen-205,Spen;Spen;Spen;Spen,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,17,19,56381,ENSMUSG00000040761,conserved gene and region,4,141517106,141517299,194,*,194,13,0.510309278,1.030228758,0.067010309,4.64E-08,CpGisland,TRUE,U10,Tr-S
4225,cg27026033,-0.000019,0.00000353,-5.372399473,0.000000153,loss,yes,0.0000132,0.000006,2.205394016,0.028160173,pos,ns,0.002952754,0.001757822,1.67977985,0.094007603,pos,ns,1.026837022,-0.0000538,0.0000605,-0.889322365,0.374519437,neg,ns,0.1532602,Fndc3b,Fndc3b_Exon,3,27711293,27711342,27711341,27711342,50,+,GGATTCCGCCATGTCAATGATGTCGGGACCACATGGGGATTTGGGGCCCG,Promoter (<=1kb),3,27494432,27711307,216876,2,Fndc3b-202,0,Fndc3b-204;Fndc3b-201;Fndc3b-202;Fndc3b-203,Fndc3b;Fndc3b;Fndc3b;Fndc3b,0;0;0;-54,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,72007,ENSMUSG00000039286,conserved gene but different region,3,27711299,27711405,107,*,107,11,0.635514019,1.026155187,0.102803738,7.87E-09,CpGisland,TRUE,U1,Pr-A
18072,cg16269759,-0.0000042,0.00000342,-1.229810598,0.219700549,loss,ns,0.0000128,0.00000581,2.205277823,0.028168405,pos,ns,0.002358357,0.00170123,1.386266256,0.166661854,pos,ns,0.77816379,-0.00000186,0.0000585,-0.031760162,0.974683755,neg,ns,0.931933295,Pola1,Pola1_Intron,X,93497731,93497780,93497779,93497780,50,+,CGCAAGTCGAGTCATAATAGCAGTAATGATCTCCCCAATCAGGAGACTCG,"Intron (Pola1-201/Pola1, intron 26 of 36)",20,93304767,93632155,327389,2,Pola1-201,134375,Pola1-201,Pola1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,59,62,18968,ENSMUSG00000006678,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15932,cg26680945,-0.0000455,0.0000189,-2.407574909,0.016642846,loss,ns,0.0000709,0.0000321,2.205130296,0.02817886,pos,ns,-0.005144207,0.009413164,-0.54649073,0.585121769,neg,ns,0.232753744,0.00028201,0.000323718,0.871160783,0.384340508,pos,ns,0.499494467,Haao,Haao_Intergenic_upstream,17,83902214,83902263,83902214,83902215,50,+,CGTGCCTCCTGGAAACCACATCAAATGGTGCAGCTAGGAATTAATAAATA,Distal Intergenic,17,83837173,83847963,10791,2,Haao-205,-54251,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,6,107766,ENSMUSG00000000673,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25711,cg15722093,-0.0000105,0.00000769,-1.365290519,0.173151681,loss,ns,0.0000288,0.0000131,2.205084757,0.028182087,pos,ns,0.009436912,0.003829358,2.464358734,0.0142681,pos,ns,1.845633858,-0.00031146,0.000131691,-2.365073199,0.018642059,neg,ns,0.877449275,Lmo3,Lmo3_Intron,6,138514722,138514771,138514722,138514723,50,+,CGGTTGAGTTCTATTCTAATAAATCTCCAATTGTAAACTAATGAAAAGAC,"Intron (Lmo3-204/Lmo3, intron 1 of 4)",6,138362918,138581968,219051,2,Lmo3-204,67197,Lmo3-204,Lmo3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,38,109593,ENSMUSG00000030226,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13061,cg10402101,0.000116982,0.0000119,9.793008804,6.61E-20,gain,yes,-0.0000447,0.0000203,-2.204930816,0.028193001,neg,ns,-0.018014068,0.005945401,-3.029916611,0.002652156,neg,ns,2.576400858,0.000779256,0.000204462,3.811252162,0.000166763,pos,ns,0.677784016,Tcf4,Tcf4_Exon,18,69347314,69347363,69347314,69347315,50,+,CGAATGGCTGCCTTAGGGACGGACAAAGAGCTGAGTGATTTACTGGATTT,Promoter (<=1kb),18,69347345,69357292,9948,1,Tcf4-244,0,Tcf4-259;Tcf4-201;Tcf4-207;Tcf4-210;Tcf4-240;Tcf4-254;Tcf4-246;Tcf4-206;Tcf4-202;Tcf4-257;Tcf4-232;Tcf4-215;Tcf4-248;Tcf4-231;Tcf4-205;Tcf4-253;Tcf4-244;Tcf4-233;Tcf4-238;Tcf4-245;Tcf4-249;Tcf4-219;Tcf4-235;Tcf4-227,Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,66,21413,ENSMUSG00000053477,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
18473,cg23720638,-0.00000343,0.00000223,-1.540861199,0.124370689,loss,ns,-0.00000835,0.00000379,-2.204908084,0.028194613,neg,ns,0.000531617,0.001108985,0.479372905,0.632011362,pos,ns,0.199275114,-0.0000532,0.0000381,-1.39521082,0.163950986,neg,ns,0.940700377,Prpf3,Prpf3_Exon,3,95849772,95849821,95849772,95849773,50,-,CGAGCGCTTCCTGGAACTCCTACAGTTCAAGAAAAAGGACTCTCCCATAA,"Exon (Prpf3-203/Prpf3, exon 3 of 6)",3,95830124,95855885,25762,2,Prpf3-201,6064,Prpf3-201;Prpf3-204;Prpf3-207;Prpf3-208;Prpf3-206;Prpf3-203;Prpf3-205,Prpf3;Prpf3;Prpf3;Prpf3;Prpf3;Prpf3;Prpf3,0;0;0;-4605;-3596;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,6,70767,ENSMUSG00000015748,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20753,cg25848520,-0.00000263,0.00000504,-0.521477814,0.602406304,loss,ns,0.0000189,0.00000856,2.204592056,0.028217031,pos,ns,0.007596343,0.002507087,3.029948138,0.002651888,pos,ns,2.576444871,-0.000301342,0.0000862,-3.495101386,0.000542982,neg,ns,0.9049315,Ccdc73,Ccdc73_Intron,2,105003814,105003863,105003814,105003815,50,+,CGTAAATAAAGAGGTTGCTGACATTAACATTCCATCACATAGCTTCATGC,"Intron (Ccdc73-204/Ccdc73, intron 2 of 2)",2,104992190,105017851,25662,1,Ccdc73-204,11624,Ccdc73-201;Ccdc73-204;Eif3m-203;Eif3m-201;Eif3m-204;Eif3m-202,Ccdc73;Ccdc73;Eif3m;Eif3m;Eif3m;Eif3m,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,3,211936,ENSMUSG00000045106,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25728,cg12946247,-0.00000239,0.00000125,-1.903682584,0.057877423,loss,ns,0.0000047,0.00000213,2.204444146,0.028227528,pos,ns,0.001505482,0.000624059,2.412403828,0.016428123,pos,ns,1.784412063,-0.0000227,0.0000215,-1.056826547,0.291413621,neg,ns,0.029003442,Lhx9,Lhx9_Exon,1,138831557,138831606,138831605,138831606,50,-,TCAACACCCCCATTCTCCTGCCGCAAAAGGTTCCTTCTGAATTTGGCTCG,"Exon (Lhx9-202/Lhx9, exon 7 of 7)",1,138825186,138842457,17272,2,Lhx9-201,10851,Lhx9-201;Lhx9-203;Lhx9-205;Lhx9-202;Lhx9-204;Lhx9-206;Lhx9-207,Lhx9;Lhx9;Lhx9;Lhx9;Lhx9;Lhx9;Lhx9,0;0;0;0;0;2053;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,12,16876,ENSMUSG00000019230,conserved gene and region,1,138831484,138831610,127,*,127,12,0.62992126,0.954887218,0.094488189,3.59E-09,CpGisland,TRUE,NA,NRS
24231,cg18095212,-0.000000372,0.00000211,-0.176913148,0.859692138,loss,ns,-0.00000788,0.00000358,-2.20443629,0.028228086,neg,ns,-0.002404374,0.00104771,-2.294886074,0.022407502,neg,ns,1.649606563,-0.00000638,0.000036,-0.17701897,0.859609088,neg,ns,0.951657037,Gm12902,Gm12902_Intergenic_downstream,4,124048445,124048494,124048493,124048494,50,+,TGAACAGAACAACCGATTTAAGCTAAATCAACGCCTACTTAAGTGAGCCG,Distal Intergenic,4,123926234,123926555,322,1,Gm12902-201,122211,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,34,34,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21204,cg26120323,-0.00000271,0.00000106,-2.571956066,0.010578178,loss,ns,0.00000395,0.00000179,2.20429228,0.02823831,pos,ns,0.001117409,0.000525365,2.126918613,0.034216281,pos,ns,1.46576719,-0.0000181,0.0000181,-1.003751714,0.316281143,neg,ns,0.971003293,Mpped2,Mpped2_Exon,2,106744746,106744795,106744746,106744747,50,+,CGGTTTGTCTGCATCTCAGACACACACTCCAGAACAGATGGTATCCAGAT,"Exon (Mpped2-202/Mpped2, exon 3 of 7)",2,106693269,106868356,175088,1,Mpped2-202,51477,Mpped2-202;Mpped2-206;Mpped2-201;Mpped2-203;Mpped2-204;Mpped2-205,Mpped2;Mpped2;Mpped2;Mpped2;Mpped2;Mpped2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,16,33,77015,ENSMUSG00000016386,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3273,cg14815090,-0.00000126,0.00000247,-0.509689153,0.610631904,loss,ns,0.00000924,0.00000419,2.204201496,0.028244757,pos,ns,0.003488302,0.001227458,2.841891075,0.00478195,pos,ns,2.320394934,-0.000137485,0.0000422,-3.257001063,0.001250751,neg,ns,0.946822465,Kmt2e,Kmt2e_fiveUTR,5,23450210,23450259,23450258,23450259,50,+,TTTGGATACCAATGCATAGGACTCCATAGTAATCGAATTTACCAGAGGCG,5' UTR,5,23434441,23486400,51960,1,Kmt2e-207,15769,Kmt2e-207;Kmt2e-201;Kmt2e-202,Kmt2e;Kmt2e;Kmt2e,0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,8,69188,ENSMUSG00000029004,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19271,cg04068216,0.0000964,0.00000934,10.32380579,1.14E-21,gain,yes,0.000035,0.0000159,2.203991854,0.028259649,pos,ns,0.01299283,0.00464812,2.795287093,0.005508726,pos,ns,2.258948812,-0.000172809,0.000159848,-1.081079945,0.280501842,neg,ns,0.327630521,Ophn1,Ophn1_fiveUTR,X,98890980,98891029,98891028,98891029,50,-,GAAACTGGGGAGCAGTCAGCGCCCTAGGACTCCAGCTGGAAAGCGTGGCG,Promoter (<=1kb),20,98554277,98890985,336709,2,Ophn1-201,0,Ophn1-201;Ophn1-202;Ophn1-203;Ophn1-207;Ophn1-205;Ophn1-210;Ophn1-204;Ophn1-209,Ophn1;Ophn1;Ophn1;Ophn1;Ophn1;Ophn1;Ophn1;Ophn1,0;-199;0;0;0;-371;-596;-355,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,3,94190,ENSMUSG00000031214,conserved gene but different region,X,98890705,98891193,489,*,489,32,0.613496933,0.698571429,0.065439673,1.01E-18,CpGisland,TRUE,NA,NRS
11297,cg22710034,-0.00000209,0.00000742,-0.281038614,0.778868266,loss,ns,0.0000278,0.0000126,2.20396432,0.028261606,pos,ns,0.002689551,0.003692919,0.728299344,0.466980139,pos,ns,0.33070159,-0.0000203,0.000126999,-0.160230512,0.872803851,neg,ns,0.690767928,Rbmx,Rbmx_threeUTR,X,57387366,57387415,57387366,57387367,50,+,CGTGTAGGTGGAGCACTACGTGAGTTACCTGCAGGGTCAATGGTCAGGTA,3' UTR,20,57383530,57392981,9452,2,Rbmx-205,5566,Rbmx-205;Rbmx-201;Rbmx-203;Rbmx-202;Rbmx-206;Rbmx-204,Rbmx;Rbmx;Rbmx;Rbmx;Rbmx;Rbmx,0;0;0;0;0;5382,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,6,19655,ENSMUSG00000031134,mapped to different genes,X,57387235,57387385,151,*,151,11,0.543046358,0.990459153,0.072847682,0.000000299,CpGisland,TRUE,NA,NRS
25272,cg00823476,-0.0000826,0.0000108,-7.639275246,2.74E-13,loss,yes,-0.0000405,0.0000184,-2.20388738,0.028267073,neg,ns,0.02422589,0.005379896,4.503040791,0.0000095,pos,ns,5.022473319,-0.000606053,0.000185014,-3.27571349,0.001173369,neg,ns,0.852160587,Pdik1l,Pdik1l_fiveUTR,4,134284506,134284555,134284506,134284507,50,-,CGTACTTTGGCTGGCTACTCACCATCTTCAAGGTCGAGGTTTCTGGAAAA,5' UTR,4,134275002,134287239,12238,2,Pdik1l-203,2684,Pdik1l-203;Pdik1l-201;Pdik1l-202;Pdik1l-206;Pdik1l-204;Pdik1l-205,Pdik1l;Pdik1l;Pdik1l;Pdik1l;Pdik1l;Pdik1l,0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,8,230809,ENSMUSG00000050890,conserved gene but different region,4,134284376,134284541,166,*,166,11,0.493975904,1.129251701,0.06626506,0.000000769,CpGisland,TRUE,U10,Tr-S
11732,cg17340094,0.0000874,0.0000121,7.21068764,4.28E-12,gain,yes,0.0000454,0.0000206,2.203800785,0.028273228,pos,ns,0.01179812,0.006030468,1.956418587,0.051313461,pos,ns,1.289768689,-0.000120819,0.000207387,-0.582578406,0.56060064,neg,ns,0.426373976,Fam204a,Fam204a_Intergenic_upstream,19,60287012,60287061,60287012,60287013,50,+,CGGCTGTTTAACATTCATGGGAAAATCATCATCAAACAGCGTTATCACAG,Distal Intergenic,19,60199435,60226701,27267,2,Fam204a-205,-60311,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,14,76539,ENSMUSG00000057858,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22297,cg12445914,0.000000675,0.00000197,0.341826128,0.732713352,gain,ns,-0.00000739,0.00000335,-2.20365372,0.028283683,neg,ns,0.000152169,0.000982746,0.154840691,0.877047675,pos,ns,0.056976798,-0.0000309,0.0000338,-0.913584184,0.361645366,neg,ns,0.947124043,Setd5,Setd5_Exon,6,113105982,113106031,113105982,113105983,50,+,CGAAAGAGACCCAAGGGGCCTAGGGGGCAGCACACCCCCAGAAGCCAAGT,"Exon (Setd5-209/Setd5, exon 3 of 3)",6,113077365,113107561,30197,1,Setd5-209,28617,Setd5-209;Setd5-201;Setd5-206;Setd5-205;Setd5-203;Setd5-212;Setd5-202;Setd5-204;Setd5-210;Setd5-214;Setd5-207,Setd5;Setd5;Setd5;Setd5;Setd5;Setd5;Setd5;Setd5;Setd5;Setd5;Setd5,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,19,72895,ENSMUSG00000034269,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17515,cg03710142,-0.0000543,0.0000117,-4.660635518,0.00000469,loss,ns,0.0000436,0.0000198,2.203454188,0.028297874,pos,ns,0.004477044,0.005800487,0.771839261,0.440797608,pos,ns,0.355760771,-0.000194938,0.000199478,-0.977238929,0.329212862,neg,ns,0.747373271,Gm2497,Gm2497_Intergenic_downstream,9,90693146,90693195,90693146,90693147,50,-,CGGTTAATCTGCAGGCAAACCCACACCCATGTCTATGCCCGTTGCTCTCC,Distal Intergenic,9,90732924,90733524,601,2,Gm2497-201,40378,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,9,100039925,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25523,cg05131628,0.0000861,0.0000163,5.267128377,0.00000026,gain,yes,0.0000612,0.0000278,2.202879633,0.028338771,pos,ns,0.029392681,0.008137535,3.611988455,0.000354325,pos,ns,3.450598568,-0.000499051,0.000279849,-1.783287139,0.075517861,neg,ns,0.341890819,Gm13005,Gm13005_Intergenic_downstream,4,137139400,137139449,137139400,137139401,50,+,CGGGGTCTGGTTTTATTAGCTTTTGCTGACACCCACAGAGAAGTCTGTGA,Distal Intergenic,4,137219760,137220399,640,2,Gm13005-201,80950,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,4,100047000,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6775,cg27292534,-0.00000188,0.00000832,-0.226485656,0.820972981,loss,ns,0.0000311,0.0000141,2.202501328,0.028365727,pos,ns,-0.00027377,0.004141544,-0.066103393,0.947338119,neg,ns,0.023494987,0.000318379,0.000142427,2.235376663,0.026104473,pos,ns,0.866362751,Lhx2,Lhx2_Intergenic_downstream,2,38403273,38403322,38403321,38403322,50,+,CAAACAATTTATACATTTAGAATCCTAAGTTTTCAAAACTCAGCCCGCCG,Distal Intergenic,2,38353802,38360089,6288,1,Lhx2-206,49471,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,33,16870,ENSMUSG00000000247,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5641,cg16102730,-0.00000192,0.00000315,-0.609904989,0.542371547,loss,ns,0.0000118,0.00000535,2.202483934,0.028366967,pos,ns,0.003411362,0.001567668,2.176073819,0.030304572,pos,ns,1.518491851,-0.000101563,0.0000539,-1.883862168,0.060519358,neg,ns,0.949347384,Mapkap1,Mapkap1_Intron,2,34455768,34455817,34455816,34455817,50,-,AAGAATAGGTCTGTTGACCATGAATAATTTTTGTCAGTTTTGCTACCCCG,"Intron (Mapkap1-210/Mapkap1, intron 4 of 4)",2,34406771,34497716,90946,1,Mapkap1-210,48997,Mapkap1-210;Mapkap1-204;Mapkap1-211;Mapkap1-202;Mapkap1-201;Mapkap1-209;Mapkap1-203;Mapkap1-207;Mapkap1-206,Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,59,227743,ENSMUSG00000038696,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20004,cg12334849,-0.00000143,0.00000101,-1.410096297,0.159513784,loss,ns,0.00000379,0.00000172,2.202330047,0.028377939,pos,ns,0.000470131,0.000504035,0.93273449,0.351682955,pos,ns,0.45384868,-0.0000105,0.0000173,-0.608595591,0.543238205,neg,ns,0.963264612,Nhsl2,Nhsl2_Exon,X,102076191,102076240,102076191,102076192,50,+,CGACACTCGTTGTTTAACACAGAGACAGCCGTGAACCCCAAGTCCACCCT,"Exon (Nhsl2-202/Nhsl2, exon 3 of 3)",20,101849385,102076276,226892,1,Nhsl2-202,226806,Nhsl2-202;Nhsl2-201;Nhsl2-207;Nhsl2-206;Nhsl2-205;Nhsl2-204;Rtl5-201;Rtl5-202;Rtl5-204,Nhsl2;Nhsl2;Nhsl2;Nhsl2;Nhsl2;Nhsl2;Rtl5;Rtl5;Rtl5,0;0;0;0;0;0;-4995;-4887;-4887,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,7,100042480,ENSMUSG00000079481,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7392,cg02632028,-0.00000882,0.00000419,-2.103245195,0.03625001,loss,ns,0.0000157,0.00000712,2.202226537,0.028385321,pos,ns,0.005748413,0.002086429,2.755144032,0.006213529,pos,ns,2.206661667,-0.000173354,0.0000718,-2.416009196,0.016269404,neg,ns,0.915736015,R3hcc1l,R3hcc1l_Intron,19,42539722,42539771,42539770,42539771,50,+,CAAGTAACTTAACTTGATTGTGTGTCTTAATATTACTGGGCTTCTGACCG,"Intron (R3hcc1l-201/R3hcc1l, intron 1 of 6)",19,42518759,42592343,73585,1,R3hcc1l-201,20963,R3hcc1l-201;R3hcc1l-202;R3hcc1l-203,R3hcc1l;R3hcc1l;R3hcc1l,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,13,52013,ENSMUSG00000025184,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27630,cg18655951,0.0000679,0.0000259,2.615478054,0.009346144,gain,ns,0.0000971,0.0000441,2.202196163,0.028387488,pos,ns,0.037970996,0.012913057,2.940511852,0.003523264,pos,ns,2.453054847,-0.000650528,0.000444079,-1.464891795,0.143963859,neg,ns,0.41554249,Aim2,Aim2_Intron,1,173390291,173390340,173390339,173390340,50,+,TTTTTCAGTTCTGGTGCTGATGCTGTGTGTGTGGTGAGGTCTCTGTGGCG,"Intron (Aim2-202/Aim2, intron 1 of 11)",1,173350879,173466040,115162,1,Aim2-202,39412,Aim2-202,Aim2,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,7,383619,ENSMUSG00000037860,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6883,cg20811137,-0.00000375,0.00000698,-0.536737867,0.591833681,loss,ns,0.0000261,0.0000119,2.202193283,0.028387693,pos,ns,0.011005394,0.003475582,3.166489046,0.001696422,pos,ns,2.770466103,-0.000338111,0.000119525,-2.828788786,0.004976921,neg,ns,0.90207702,Gm18591,Gm18591_Intergenic_downstream,12,39211399,39211448,39211447,39211448,50,+,GAAGTCTTTATATACACATTCACACATTATAATTAAATGATTTTACTACG,Distal Intergenic,12,39208892,39209654,763,1,Gm18591-201,2507,Gm18591-201,Gm18591,2507,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,5,100417403,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10518,cg24712893,-0.00000272,0.00000202,-1.34790776,0.178672202,loss,ns,0.00000755,0.00000343,2.202118349,0.028393039,pos,ns,0.001861713,0.001004052,1.854198894,0.064660327,pos,ns,1.189362103,-0.0000807,0.0000345,-2.338377668,0.020003113,neg,ns,0.947365827,Npas3,Npas3_Intron,12,53963110,53963159,53963110,53963111,50,-,CGTACCTCTGACTAACTTAAAGAATTGAGCTGGGATAATTCACACAATTC,"Intron (Npas3-204/Npas3, intron 5 of 10)",12,53248157,54069532,821376,1,Npas3-204,714953,Npas3-204;Npas3-201;Npas3-203,Npas3;Npas3;Npas3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,83,103,27386,ENSMUSG00000021010,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11837,cg09399167,-0.00000254,0.0000015,-1.700337295,0.090070433,loss,ns,0.00000559,0.00000254,2.201804153,0.028415462,pos,ns,0.002233981,0.000744411,3.001003595,0.002909437,pos,ns,2.536191051,-0.0000632,0.0000256,-2.468736766,0.014098137,neg,ns,0.967644172,Uaca,Uaca_Intron,9,61092976,61093025,61093024,61093025,50,-,GGAAAATGTTCACAGCAGTTACAACTTTGGATGAATATGCATTAGCGGCG,"Intron (Gm34004-201/Gm34004-201, intron 2 of 3)",9,60866145,60870130,3986,1,Uaca-204,226880,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,7,72565,ENSMUSG00000034485,mapped to different genes,9,61093021,61093055,35,*,35,7,0.742857143,1.449704142,0.2,8.09E-08,CpGisland,TRUE,U11,Tr-P
10193,cg17562187,0.0000632,0.0000354,1.784485409,0.075322682,gain,ns,0.000132417,0.0000601,2.20151682,0.028435982,pos,ns,0.018709253,0.017621382,1.061735858,0.289182054,pos,ns,0.538828662,0.001054263,0.000605998,1.73971459,0.082901637,pos,ns,0.220114338,Hoxa9,Hoxa9_Exon,6,52225696,52225745,52225744,52225745,50,+,ACAGCGGTTCAGGTTTAATGCCATAAGGCCGGCTGGAGGGCAAGCCCGCG,"Exon (Hoxa9-201/Hoxa9, exon 1 of 2)",6,52223100,52227370,4271,2,Hoxa9-201,1625,Hoxa7-204;Hoxa9-201;Hoxa9-203;Hoxa9-202;Hoxa9-204;Hoxa9-205,Hoxa7;Hoxa9;Hoxa9;Hoxa9;Hoxa9;Hoxa9,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,14,15405,ENSMUSG00000038227,mapped to different genes,6,52225670,52226051,382,*,382,36,0.678010471,0.824460432,0.094240838,1.10E-26,CpGisland,TRUE,NA,NRS
4935,cg25565481,-0.00000997,0.00000653,-1.527835114,0.127573145,loss,ns,0.0000244,0.0000111,2.20144843,0.028440868,pos,ns,0.010497699,0.003247953,3.232097011,0.001361092,pos,ns,2.866112506,-0.000341933,0.000111697,-3.061262472,0.002396957,neg,ns,0.9007321,Cbll1,Cbll1_Exon,12,31487879,31487928,31487927,31487928,50,+,TAAATTGCTGTGTTTTCTTGTTGAAATACGAAAGGTTTCCTGACTGACCG,"Exon (Gm29542-201/Gm29542-201, exon 3 of 3)",12,31484829,31499555,14727,2,Cbll1-201,11627,Cbll1-201;Cbll1-204;Cbll1-203;Cbll1-205;Cbll1-202,Cbll1;Cbll1;Cbll1;Cbll1;Cbll1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,3,104836,ENSMUSG00000020659,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25363,cg23939000,-0.0000152,0.00000324,-4.684266907,0.00000421,loss,ns,-0.0000121,0.00000551,-2.201219851,0.028457204,neg,ns,-0.002480955,0.001613608,-1.537520964,0.125185814,neg,ns,0.902444881,-0.0000627,0.0000555,-1.130065277,0.259322321,neg,ns,0.95486887,Plcb4,Plcb4_Exon,2,135968357,135968406,135968405,135968406,50,+,GGGAGGCCGAGTCGATTCCAGTAATTACATGCCTCAGATTTTCTGGAACG,"Exon (Plcb4-206/Plcb4, exon 23 of 29)",2,135659711,135983013,323303,1,Plcb4-206,308646,Plcb4-206;Plcb4-215;Plcb4-202;Plcb4-201,Plcb4;Plcb4;Plcb4;Plcb4,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,18798,ENSMUSG00000039943,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19124,cg01531932,-0.00000772,0.00000535,-1.442566332,0.150152265,loss,ns,0.00002,0.00000909,2.200914825,0.028479015,pos,ns,0.006825393,0.002663348,2.562711529,0.010857854,pos,ns,1.964255983,-0.000247137,0.0000916,-2.698227393,0.007352866,neg,ns,0.911039321,Gm49017,Gm49017_Intergenic_upstream,14,98536579,98536628,98536627,98536628,50,-,AATATCAGGTTTGATGTATTCATTATCGGCACTCAGTACATTAATTCACG,Distal Intergenic,14,98519416,98519700,285,2,Gm49017-201,-16928,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,11,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21457,cg03382217,-0.000000471,0.00000254,-0.185155727,0.853227973,loss,ns,0.00000951,0.00000432,2.2008824,0.028481334,pos,ns,0.000581539,0.001265832,0.459412396,0.64626004,pos,ns,0.189592697,-0.00000759,0.0000435,-0.174320479,0.861727392,neg,ns,0.941559312,Bcl11b,Bcl11b_Intergenic_downstream,12,107828511,107828560,107828511,107828512,50,-,CGATTGACAAAATAATTTGTACCCGTCGATGCTCATGAAGGGAATTTTTA,Distal Intergenic,12,107915222,108003414,88193,2,Bcl11b-203,174903,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,39,58208,ENSMUSG00000048251,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20437,cg03146625,0.000287447,0.0000161,17.8376058,1.82E-49,gain,yes,-0.0000602,0.0000274,-2.200719904,0.028492961,neg,ns,0.004716001,0.008020427,0.587998816,0.556961186,pos,ns,0.25417507,0.00012219,0.000275822,0.443003613,0.658072098,pos,ns,0.20784721,Hoxc4,Hoxc4_threeUTR,15,103035732,103035781,103035732,103035733,50,-,CGCTACCTGACCCGAAGGAGAAGGATCGAGATCGCCCACTCGCTGTGCCT,3' UTR,15,103018934,103036405,17472,1,Hoxc4-202,16798,Hoxc4-202;Hoxc4-201,Hoxc4;Hoxc4,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,17,91,15423,ENSMUSG00000075394,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
6452,cg10796046,-0.0000732,0.0000164,-4.468083085,0.0000111,loss,ns,0.0000613,0.0000278,2.200195134,0.028530535,pos,ns,-0.007101918,0.008155779,-0.870783483,0.384546202,neg,ns,0.415051474,-0.0000813,0.000280477,-0.289827861,0.772141691,neg,ns,0.690776065,Tenm2,Tenm2_Intergenic_upstream,11,37316382,37316431,37316430,37316431,50,-,AAGGAGGGCTAATGTCACCCATTCGTCTTAATTAAAGAGTTAATTGCTCG,Distal Intergenic,11,36944205,37235964,291760,2,Tenm2-207,-80467,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,9,84,23964,ENSMUSG00000049336,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27295,cg23088328,0.0000859,0.0000327,2.624925297,0.009096339,gain,ns,-0.000122363,0.0000556,-2.199875456,0.028553445,neg,ns,0.013609715,0.016295525,0.835181153,0.404258917,pos,ns,0.393340392,-0.00128324,0.000560402,-2.289857453,0.022701167,neg,ns,0.207541476,Prrx1,Prrx1_Promoter,1,163314894,163314943,163314942,163314943,50,+,ATTTGATGCCATCAAAGGGCTGTAGATTGAAACCAGATGTGCTCGCCTCG,Promoter (1-2kb),1,163245119,163313710,68592,2,Prrx1-201,-1184,Prrx1-202;Prrx1-201;Prrx1-204;Prrx1-203,Prrx1;Prrx1;Prrx1;Prrx1,0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,11,18933,ENSMUSG00000026586,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4125,cg17088589,-0.0000182,0.00000865,-2.101517344,0.036402418,loss,ns,0.0000323,0.0000147,2.199518596,0.028579039,pos,ns,0.013982187,0.00430697,3.246409577,0.001296623,pos,ns,2.887186213,-0.000245145,0.000148116,-1.655085042,0.09891924,neg,ns,0.530881083,Gm12073,Gm12073_Intergenic_upstream,11,26926194,26926243,26926194,26926195,50,-,CGTTTGTAAATTTGAGACAGACTTTAATATTGTTAGACGGTAGGGGAGTC,Distal Intergenic,11,26856387,26856910,524,2,Gm12073-201,-69333,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,4,100416537,NA,mapped to different genes,11,26926005,26926232,228,*,228,17,0.557017544,1.061336254,0.074561404,3.94E-11,CpGisland,TRUE,U15,NS
22915,cg10783741,0.00000564,0.00000266,2.117763233,0.034990875,gain,ns,-0.00000995,0.00000453,-2.199037736,0.028613558,neg,ns,-0.00215306,0.001325707,-1.624084878,0.105374013,neg,ns,0.977266478,0.0000701,0.0000456,1.536786735,0.12536555,pos,ns,0.958513603,Plekha7,Plekha7_Exon,7,116148266,116148315,116148266,116148267,50,+,CGACAGCCCCGTGCTGACTTCTTCAGCACTTTGTAAAGCACGTTGATCAA,"Exon (Plekha7-219/Plekha7, exon 15 of 19)",7,116123485,116237812,114328,2,Plekha7-210,89497,Plekha7-210;Plekha7-203;Plekha7-201;Plekha7-205;Plekha7-202;Plekha7-207;Plekha7-206;Plekha7-219;Plekha7-213,Plekha7;Plekha7;Plekha7;Plekha7;Plekha7;Plekha7;Plekha7;Plekha7;Plekha7,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,233765,ENSMUSG00000045659,conserved gene and region,7,116148129,116148307,179,*,179,12,0.586592179,0.779956427,0.067039106,0.000000178,CpGisland,TRUE,U11,Tr-P
20966,cg09473919,0.00000411,0.00000258,1.594098066,0.111933086,gain,ns,-0.00000963,0.00000438,-2.199015504,0.028615154,neg,ns,-0.002419625,0.001282581,-1.886527711,0.060158316,neg,ns,1.220704332,0.0000538,0.0000441,1.219845467,0.223450677,pos,ns,0.91526347,Zfp326,Zfp326_Exon,5,105888533,105888582,105888533,105888534,50,+,CGGAGGTAGTTATGGTGGTCGATTTGAGAGCTCCTACCGGAATAGCCTTG,"Exon (Zfp326-201/Zfp326, exon 5 of 12)",5,105876565,105914780,38216,1,Zfp326-209,11968,Zfp326-209;Zfp326-208;Zfp326-201;Zfp326-205;Zfp326-206;Zfp326-202;Zfp326-203;Zfp326-204,Zfp326;Zfp326;Zfp326;Zfp326;Zfp326;Zfp326;Zfp326;Zfp326,0;0;0;0;0;11592;0;-2362,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,11,54367,ENSMUSG00000029290,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18538,cg07373156,0.0000492,0.000014,3.529059494,0.000480212,gain,ns,0.0000521,0.0000237,2.198883769,0.028624618,pos,ns,0.01369861,0.006945481,1.972305486,0.049463266,pos,ns,1.305717213,-0.0000823,0.000238855,-0.344508747,0.730697313,neg,ns,0.183115492,Hoxb8,Hoxb8_fiveUTR,11,96281984,96282033,96282032,96282033,50,+,AATACCAATTACATTTATAGGACCTTTTAAAACTCGGCGCAATTAAACCG,Promoter (<=1kb),11,96281905,96285315,3411,1,Hoxb8-201,79,Hoxb7-201;Hoxb8-201;Hoxb8-202;Hoxb8-203,Hoxb7;Hoxb8;Hoxb8;Hoxb8,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,11,26,15416,ENSMUSG00000056648,mapped to different genes,11,96282018,96282200,183,*,183,12,0.486338798,1.109090909,0.065573771,0.000000226,CpGisland,TRUE,U13,Hc-P
10415,cg00251636,0.00000992,0.00000609,1.62840617,0.104454599,gain,ns,0.0000227,0.0000103,2.198824649,0.028628866,pos,ns,0.005920316,0.003031132,1.953170089,0.051698866,pos,ns,1.286518979,-0.00010255,0.00010424,-0.983783176,0.325989313,neg,ns,0.321012789,Msx2,Msx2_Exon,13,53468395,53468444,53468395,53468396,50,-,CGGTTCTGGAACCAGATTTTGACCTGGGTCTCTGTGAGGTTCAGAGAGCT,"Exon (Msx2-201/Msx2, exon 2 of 2)",13,53466884,53473074,6191,2,Msx2-201,4630,Msx2-201;Msx2-202,Msx2;Msx2,0;4630,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,4,17702,ENSMUSG00000021469,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
27580,cg15243979,-0.00000434,0.00000495,-0.877574669,0.380854188,loss,ns,0.0000185,0.0000084,2.198800533,0.028630599,pos,ns,0.004707324,0.002461616,1.912290058,0.056760472,pos,ns,1.245954003,-0.000144353,0.0000847,-1.705200537,0.0891588,neg,ns,0.903638351,Tshz2,Tshz2_threeUTR,2,170071314,170071363,170071362,170071363,50,-,AATATTCCCGTTAATAATGAGATCTAATTAAGACATCCATTAAAAGCCCG,3' UTR,2,169884893,170071816,186924,1,Tshz2-203,186421,Tshz2-203;Tshz2-205,Tshz2;Tshz2,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,8,30,228911,ENSMUSG00000047907,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26250,cg18840480,-0.00000373,0.00000115,-3.252166432,0.0012715,loss,ns,0.00000428,0.00000195,2.198729827,0.02863568,pos,ns,0.001646966,0.000570503,2.886867452,0.004164357,pos,ns,2.380452026,-0.000046,0.0000196,-2.344001239,0.019709363,neg,ns,0.966112119,Kras,Kras_Exon,6,145225109,145225158,145225157,145225158,50,+,CAGCCAGGAGTCTTTTCTTCTTTGCTGATTTTTTTCAATCTGTATTGTCG,"Exon (Kras-202/Kras, exon 5 of 6)",6,145216699,145250239,33541,2,Kras-201,25081,Kras-201;Kras-203;Kras-207;Kras-202;Kras-206;Kras-204,Kras;Kras;Kras;Kras;Kras;Kras,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,16653,ENSMUSG00000030265,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7128,cg05919078,0.0000123,0.0000154,0.802655426,0.422788849,gain,ns,0.0000574,0.0000261,2.198506319,0.028651748,pos,ns,-0.002014765,0.007643229,-0.263601315,0.792262278,neg,ns,0.101131022,0.000114418,0.00026285,0.435297849,0.663649155,pos,ns,0.452330422,Gm5973,Gm5973_Intergenic_upstream,1,41166604,41166653,41166652,41166653,50,+,GTAGATATTTTCTCCCTGTTTGTGCCTAACGCGTCAGCCTTCAATGAACG,Distal Intergenic,1,40863737,40864232,496,2,Gm5973-201,-302372,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,18,18,546733,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11826,cg10184228,-0.00000542,0.0000143,-0.379155497,0.704831968,loss,ns,0.0000534,0.0000243,2.198118562,0.028679641,pos,ns,0.009921074,0.007112153,1.394946667,0.164030563,pos,ns,0.785075225,-0.000657335,0.000244586,-2.687537833,0.007586754,neg,ns,0.693706677,Camk2a,Camk2a_Exon,18,60977942,60977991,60977942,60977943,50,+,CGGAAACAGGAAATTATAAAAGTGACAGAGCAGCTGATTGAAGCCATAAG,"Exon (Camk2a-203/Camk2a, exon 15 of 18)",18,60925618,60988152,62535,1,Camk2a-203,52324,Camk2a-203;Camk2a-201;Camk2a-204;Camk2a-202,Camk2a;Camk2a;Camk2a;Camk2a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,7,12322,ENSMUSG00000024617,conserved gene and region,18,60977708,60978077,370,*,370,18,0.554054054,0.635132558,0.048648649,1.01E-08,CpGisland,TRUE,NA,NRS
20730,cg22221739,0.00000886,0.00000254,3.490305449,0.000552442,gain,ns,0.00000948,0.00000431,2.197940409,0.028692465,pos,ns,0.002401057,0.001263495,1.900329426,0.058317486,pos,ns,1.234201203,0.0000461,0.0000435,1.060679994,0.289661026,pos,ns,0.95306015,Dicer1,Dicer1_Exon,12,104694664,104694713,104694712,104694713,50,+,CTGCCGCGGGTCTTCATAAAGGTGCTTGGTTATGAGGTAGTCCAAAATCG,"Exon (Dicer1-201/Dicer1, exon 24 of 27)",12,104687742,104751952,64211,2,Dicer1-201,57239,Dicer1-201;Dicer1-206;Dicer1-204;Dicer1-205,Dicer1;Dicer1;Dicer1;Dicer1,0;0;0;5789,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,12,192119,ENSMUSG00000041415,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9941,cg13842554,0.0000488,0.00000961,5.079450013,0.000000655,gain,yes,0.0000359,0.0000163,2.197828052,0.028700555,pos,ns,0.021101101,0.004781455,4.413112556,0.0000141,pos,ns,4.851333309,-0.000352329,0.000164434,-2.142676947,0.032917512,neg,ns,0.298128121,Hs6st2,Hs6st2_Exon,X,51680359,51680408,51680407,51680408,50,+,TCACCAAAGCTAGCAGCAGCTTGTTGGATTTCTCATCCATGTTCCCGACG,"Exon (Hs6st2-201/Hs6st2, exon 2 of 5)",20,51387212,51681703,294492,2,Hs6st2-201,1295,Hs6st2-201;Hs6st2-202;Hs6st2-204;Hs6st2-205;Hs6st2-203,Hs6st2;Hs6st2;Hs6st2;Hs6st2;Hs6st2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,6,50786,ENSMUSG00000062184,conserved gene and region,X,51680404,51681589,1186,*,1186,115,0.697301855,0.813413965,0.096964587,2.22E-85,CpGisland,TRUE,U3,Pr-B
17414,cg10569638,-0.00000111,0.00000364,-0.305866702,0.759911439,loss,ns,0.0000136,0.00000618,2.197588648,0.028717799,pos,ns,0.002141375,0.001809879,1.183159037,0.23765268,pos,ns,0.624057284,-0.000106436,0.0000622,-1.710050311,0.088257145,neg,ns,0.920085821,Nrxn1,Nrxn1_Exon,17,90163842,90163891,90163842,90163843,50,-,CGCTGTCTAGCAATCGCCAGGCGCTCGTTATCATTGTTTCCTTTAAAGTT,"Exon (Nrxn1-202/Nrxn1, exon 18 of 21)",17,90033631,91088907,1055277,2,Nrxn1-202,925016,Nrxn1-202;Nrxn1-207;Nrxn1-216;Nrxn1-204;Nrxn1-217;Nrxn1-209;Nrxn1-201;Nrxn1-213;Nrxn1-206;Nrxn1-223;Nrxn1-219,Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,22,27,18189,ENSMUSG00000024109,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16324,cg19870489,-0.00000682,0.0000143,-0.47556587,0.634718625,loss,ns,0.0000536,0.0000244,2.197584296,0.028718112,pos,ns,0.004640333,0.007140302,0.64987914,0.516251567,pos,ns,0.287138617,-0.0000671,0.000245554,-0.273455188,0.78468543,neg,ns,0.096837709,Nfix,Nfix_Intron,8,84745692,84745741,84745740,84745741,50,-,CGGGTTGTGTTTCTTTAACCCCTGGGGCCTGTTGACACAGATTAGTATCG,"Intron (Nfix-204/Nfix, intron 2 of 10)",8,84704712,84773396,68685,2,Nfix-204,27655,Nfix-204;Nfix-201;Nfix-202;Nfix-203;Nfix-205,Nfix;Nfix;Nfix;Nfix;Nfix,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,49,18032,ENSMUSG00000001911,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
26474,cg08155975,0.00000965,0.00000849,1.136630249,0.256570751,gain,ns,0.0000317,0.0000144,2.197306552,0.02873813,pos,ns,0.003682651,0.004226698,0.871283264,0.38427375,pos,ns,0.415359282,-0.000155154,0.000145356,-1.067407955,0.286618196,neg,ns,0.681593635,Gm572,Gm572_Intergenic_downstream,4,148709050,148709099,148709050,148709051,50,-,CGGCGCTGAGTCACTTAATCACATTATTTGGGAAAAATATAGGGGGGAAA,Distal Intergenic,4,148643317,148671572,28256,1,Gm572-201,65782,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,11,230909,ENSMUSG00000070577,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18186,cg11464376,-0.00000187,0.00000241,-0.778171413,0.437061487,loss,ns,0.00000899,0.00000409,2.197163553,0.028748441,pos,ns,0.0043803,0.001198975,3.653369426,0.000303806,pos,ns,3.517403481,-0.000136852,0.0000412,-3.319027359,0.001010986,neg,ns,0.952332112,Ap3b1,Ap3b1_Intron,13,94416897,94416946,94416897,94416898,50,-,CGTTTATACTGATTGGTAATTCATAAAATCCCCACAGGACTTGAAACTTG,"Intron (Ap3b1-201/Ap3b1, intron 6 of 26)",13,94358960,94566317,207358,1,Ap3b1-201,57937,Ap3b1-201,Ap3b1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,55,11774,ENSMUSG00000021686,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27377,cg23662675,0.0000561,0.00000501,11.20467066,1.08E-24,gain,yes,-0.0000187,0.00000851,-2.196989245,0.028761013,neg,ns,0.000973535,0.002492721,0.390551097,0.696397322,pos,ns,0.157142908,-0.000116473,0.0000857,-1.358685814,0.175233956,neg,ns,0.044304462,Zmynd8,Zmynd8_fiveUTR,2,165884801,165884850,165884801,165884802,50,-,CGATTATCTTTGTGAGGCTCGGGTGAGCAAGAGCCATCCTGTGCATAGAA,Promoter (<=1kb),2,165785519,165884874,99356,2,Zmynd8-202,24,Zmynd8-221;Zmynd8-203;Zmynd8-220;Zmynd8-201;Zmynd8-218;Zmynd8-202;Zmynd8-204;Zmynd8-209;Zmynd8-213;Zmynd8-216;Zmynd8-207;Zmynd8-214,Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8,0;0;0;0;0;0;0;0;-4899;-591;-562;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,12,228880,ENSMUSG00000039671,conserved gene and region,2,165884700,165884821,122,*,122,10,0.565573771,1.026936027,0.081967213,0.000000423,CpGisland,TRUE,U6,En-Sp
22024,cg12286651,-0.00000301,0.00000257,-1.171210231,0.242413729,loss,ns,0.0000096,0.00000437,2.196917926,0.028766159,pos,ns,0.003773814,0.00128073,2.946612749,0.003456378,pos,ns,2.461378728,-0.0000529,0.000044,-1.200789723,0.230749489,neg,ns,0.934754435,Elavl4,Elavl4_threeUTR,4,110205466,110205515,110205514,110205515,50,+,TAAAACACACATCTTGATCTCTAAAAAGTTACCAGTGCAGTATGAACGCG,3' UTR,4,110203722,110287527,83806,2,Elavl4-204,82012,Elavl4-204;Elavl4-201;Elavl4-203;Elavl4-202;Elavl4-205;Elavl4-206;Elavl4-207;Elavl4-211,Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,8,36,15572,ENSMUSG00000028546,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27628,cg19977798,0.00000947,0.00000584,1.62026833,0.106191392,gain,ns,0.0000218,0.00000993,2.196818147,0.028773359,pos,ns,0.006920721,0.002908628,2.379376577,0.017946855,pos,ns,1.74601164,-0.0000776,0.000100027,-0.775670066,0.438535147,neg,ns,0.143959781,Aim2,Aim2_Intron,1,173366044,173366093,173366044,173366045,50,-,CGCCCTGTGCCCATCCCTGCTGGCCACTGGGTCCATCGCCCAGGAGCCAC,"Intron (Aim2-202/Aim2, intron 1 of 11)",1,173350879,173466040,115162,1,Aim2-202,15165,Aim2-202;Cadm3-202;Cadm3-201;Cadm3-205;Cadm3-203,Aim2;Cadm3;Cadm3;Cadm3;Cadm3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,7,383619,ENSMUSG00000037860,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25914,cg20465008,-0.0000018,0.0000012,-1.496344379,0.135581313,loss,ns,0.00000449,0.00000204,2.196545216,0.028793062,pos,ns,0.001457407,0.000598997,2.433079774,0.015536151,pos,ns,1.808656563,-0.0000386,0.0000206,-1.872971512,0.062013274,neg,ns,0.032460461,Rcc2,Rcc2_fiveUTR,4,140701482,140701531,140701482,140701483,50,+,CGCACATGTGTTTCTGTTTTGTGTTGTAGCATTTGTTCTGGAAGCTCGTA,Promoter (<=1kb),4,140700541,140723220,22680,1,Rcc2-202,941,Rcc2-202;Rcc2-205;Rcc2-201,Rcc2;Rcc2;Rcc2,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,3,108911,ENSMUSG00000040945,conserved gene and region,4,140701148,140701483,336,*,336,49,0.744047619,1.057010786,0.145833333,1.47E-46,CpGisland,TRUE,U1,Pr-A
625,cg23266553,0.000001,0.00000343,0.293342956,0.769456301,gain,ns,0.0000128,0.00000582,2.196529469,0.028794199,pos,ns,0.004238717,0.001705087,2.48592458,0.01344811,pos,ns,1.871338737,-0.000108218,0.0000586,-1.845538309,0.065912738,neg,ns,0.945915909,Rbfox1,Rbfox1_Exon,16,7292183,7292232,7292231,7292232,50,-,AGGGATTTGGTTTCGTAACTTTCGAAAATAGTGCCGATGCGGACAGGGCG,"Exon (Rbfox1-205/Rbfox1, exon 8 of 12)",16,5885355,7353045,1467691,1,Rbfox1-205,1406828,Rbfox1-205;Rbfox1-201;Rbfox1-202;Rbfox1-203;Rbfox1-208;Rbfox1-207,Rbfox1;Rbfox1;Rbfox1;Rbfox1;Rbfox1;Rbfox1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,35,268859,ENSMUSG00000008658,conserved gene and region,16,7292196,7292275,80,*,80,9,0.5375,1.773399015,0.1125,0.00000013,CpGisland,TRUE,U15,NS
21692,cg07500539,-0.000210226,0.0000318,-6.603379254,1.75E-10,loss,yes,-0.000118798,0.0000541,-2.196495476,0.028796654,neg,ns,0.090389396,0.015845204,5.70452701,2.72E-08,pos,ns,7.564841641,-0.004448551,0.000544915,-8.163747852,8.26E-15,neg,yes,0.690945455,Zfhx3,Zfhx3_Intron,8,108885761,108885810,108885761,108885762,50,+,CGCCTCCAAGGGGTAATCATGCAGGCATAAATTCGGAAAGTTGCTAAGCT,"Intron (Zfhx3-204/Zfhx3, intron 10 of 15)",8,107942644,108961630,1018987,1,Zfhx3-204,943117,Zfhx3-204;Zfhx3-201,Zfhx3;Zfhx3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,114,177,11906,ENSMUSG00000038872,conserved gene and region,8,108885609,108885803,195,*,195,12,0.574358974,0.75216972,0.061538462,0.000000447,CpGisland,TRUE,U11,Tr-P
23438,cg04293733,0.0000122,0.00000257,4.750563384,0.00000311,gain,ns,-0.00000958,0.00000436,-2.196327102,0.028808817,neg,ns,0.001244306,0.001277595,0.973943855,0.330843772,pos,ns,0.480377036,-0.0000454,0.0000439,-1.033355045,0.302243245,neg,ns,0.033896713,Dpyd,Dpyd_Exon,3,118433892,118433941,118433940,118433941,50,+,ATTACGTTGTTATTGCTTAAGAATACGCGTAGTCGAGGAGAGTACCAGCG,"Exon (Gm26871-202/Gm26871-202, exon 3 of 3)",3,118562129,119432924,870796,1,Dpyd-201,-128188,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,29,99586,ENSMUSG00000033308,mapped to different genes,3,118433691,118434190,500,*,500,37,0.624,0.795801609,0.074,1.85E-23,CpGisland,TRUE,U3,Pr-B
1170,cg13853164,-0.0000368,0.00000664,-5.545344089,6.29E-08,loss,yes,0.0000248,0.0000113,2.196305312,0.028810391,pos,ns,0.00557437,0.003303333,1.687498632,0.092513341,pos,ns,1.033795634,-0.000227351,0.000113601,-2.00130674,0.046230695,neg,ns,0.896988729,Osbp,Osbp_Exon,19,11989235,11989284,11989283,11989284,50,+,ACAGGAGACAAGTGTAATCTTAAATTTGTTCCTTATAGCTACTTCTCTCG,"Exon (Osbp-201/Osbp, exon 11 of 14)",19,11965941,11994112,28172,1,Osbp-201,23294,Osbp-201,Osbp,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,6,76303,ENSMUSG00000024687,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20440,cg01594821,0.000127202,0.00000789,16.12437859,6.69E-43,gain,yes,-0.0000294,0.0000134,-2.196268284,0.028813066,neg,ns,0.005590035,0.00392633,1.423730175,0.155530307,pos,ns,0.80818497,-0.0000774,0.000135026,-0.572904139,0.567124905,neg,ns,0.178441858,Hoxc4,Hoxc4_threeUTR,15,103035764,103035813,103035764,103035765,50,+,CGCCCACTCGCTGTGCCTCTCTGAGAGGCAGATCAAAATCTGGTTCCAAA,3' UTR,15,103018934,103036405,17472,1,Hoxc4-202,16830,Hoxc4-202;Hoxc4-201,Hoxc4;Hoxc4,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,17,91,15423,ENSMUSG00000075394,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
25123,cg12543164,-0.0000969,0.0000113,-8.572475037,4.88E-16,loss,yes,0.0000422,0.0000192,2.196124274,0.028823473,pos,ns,0.014990444,0.00562391,2.665484181,0.008090584,pos,ns,2.092020154,-0.000329161,0.000193406,-1.701920125,0.089772902,neg,ns,0.674566239,Ahdc1,Ahdc1_Intron,4,133025821,133025870,133025869,133025870,50,+,TGGACAGGAAGACGAATGATCCCATTATGGGAGCGTGATTTTATTCCACG,"Intron (Ahdc1-210/Ahdc1, intron 2 of 3)",4,133011260,133060820,49561,1,Ahdc1-210,14561,Ahdc1-210;Ahdc1-203;Ahdc1-204;Ahdc1-205;Ahdc1-207;Ahdc1-211;Ahdc1-209;Ahdc1-206;Ahdc1-201,Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,35,49,230793,ENSMUSG00000037692,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12340,cg09978068,-0.0000146,0.00000915,-1.597265381,0.111225363,loss,ns,0.0000341,0.0000155,2.196030075,0.028830283,pos,ns,0.008552545,0.004554336,1.877890779,0.061334723,pos,ns,1.212293592,-0.000308183,0.000156623,-1.967669203,0.049997307,neg,ns,0.64576092,Fign,Fign_threeUTR,2,63978906,63978955,63978954,63978955,50,+,GAGACAGTAATTGTGCTGTGAGAGCAGTTGTACTATTATCTGGTGCCTCG,3' UTR,2,63971507,64098012,126506,2,Fign-203,119057,Fign-203;Fign-201;Fign-202;Fign-204,Fign;Fign;Fign;Fign,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,14,84,60344,ENSMUSG00000075324,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22976,cg26074551,0.000000318,0.00000175,0.181307874,0.856244411,gain,ns,0.00000654,0.00000298,2.195880712,0.028841082,pos,ns,0.003012501,0.000871918,3.455028597,0.000626917,pos,ns,3.202790255,-0.0000916,0.00003,-3.056321749,0.002435621,neg,ns,0.96469142,Cnot2,Cnot2_threeUTR,10,116527840,116527889,116527840,116527841,50,-,CGATGTGGAAACATAGAAGACTGGCTGTAGTACATGTTTTCGTCATGGTA,3' UTR,10,116485161,116581511,96351,2,Cnot2-210,53622,Cnot2-210;Cnot2-204;Cnot2-212;Cnot2-203;Cnot2-202;Cnot2-213;Cnot2-209;Cnot2-214;Cnot2-215;Cnot2-205;Cnot2-207;Cnot2-211;Cnot2-217;Cnot2-216;Cnot2-206;Cnot2-201;Cnot2-208;Cnot2-218,Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,9,15,72068,ENSMUSG00000020166,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9723,cg04290072,0.00000752,0.00000778,0.966048342,0.334773018,gain,ns,0.000029,0.0000132,2.195819231,0.028845529,pos,ns,0.010975846,0.003873383,2.833659271,0.004903617,pos,ns,2.309483452,-0.000344144,0.000133205,-2.583562059,0.010236184,neg,ns,0.873133733,Prkd1,Prkd1_Intergenic_downstream,12,50295408,50295457,50295408,50295409,50,-,CGCACGTTATTAGTATAATACAAATATGCTAAAAAGCAAACAGTTTGGTG,Distal Intergenic,12,50341231,50649098,307868,2,Prkd1-201,353690,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,8,18760,ENSMUSG00000002688,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15213,cg11829696,0.000002,0.00000322,0.619606258,0.535972173,gain,ns,-0.000012,0.00000548,-2.195781907,0.028848228,neg,ns,-0.003268538,0.001604556,-2.037036032,0.042495636,neg,ns,1.371655665,0.0000533,0.0000552,0.965090973,0.335251504,pos,ns,0.915302032,Kif7,Kif7_Exon,7,79699452,79699501,79699452,79699453,50,+,CGGTCCATCTCCAGGCGCTGCCGCTCCAGGGCCACCTCCAGCCAGTACAC,"Exon (Kif7-203/Kif7, exon 17 of 19)",7,79698098,79715720,17623,2,Kif7-203,16219,Kif7-203;Kif7-201;Kif7-202;Kif7-204;Ticrr-201;Ticrr-206,Kif7;Kif7;Kif7;Kif7;Ticrr;Ticrr,0;0;0;0;39256;39221,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,16576,ENSMUSG00000050382,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1947,cg13261890,-0.00000671,0.00000212,-3.160741928,0.00172917,loss,ns,0.00000792,0.00000361,2.195708824,0.028853515,pos,ns,0.001442425,0.001056744,1.364971745,0.173251753,pos,ns,0.761322363,-0.0000404,0.0000363,-1.110911443,0.267467359,neg,ns,0.956423938,Hgf,Hgf_Exon,5,16572463,16572512,16572511,16572512,50,-,TACTGTAATGATTATCATTTTAAAACTAGCTTTTTGCCTTCGAGCTATCG,"Exon (Hgf-202/Hgf, exon 6 of 6)",5,16553495,16573434,19940,1,Hgf-202,18968,Hgf-202;Hgf-204;Hgf-206;Hgf-205;Hgf-201;Hgf-203,Hgf;Hgf;Hgf;Hgf;Hgf;Hgf,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,8,15234,ENSMUSG00000028864,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16965,cg19820507,-0.00000401,0.0000121,-0.332710439,0.739577749,loss,ns,-0.000045,0.0000205,-2.195682123,0.028855447,neg,ns,-0.001009709,0.006001398,-0.168245611,0.866499773,neg,ns,0.062231547,-0.00000872,0.000206388,-0.042230869,0.966341841,neg,ns,0.755054995,Zfp423,Zfp423_Intron,8,87719198,87719247,87719198,87719199,50,-,CGTGAATCTTTACTGCCTGGACAGATTAAACCCAGGCCCCAAGTGGCTCT,"Intron (Zfp423-203/Zfp423, intron 3 of 5)",8,87661810,87804439,142630,2,Zfp423-203,85192,Zfp423-203;Zfp423-202;Zfp423-201,Zfp423;Zfp423;Zfp423,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,42,53,94187,ENSMUSG00000045333,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7155,cg06721772,-0.00000969,0.00000789,-1.228683546,0.220122396,loss,ns,0.0000294,0.0000134,2.195397212,0.028876066,pos,ns,0.009037862,0.003925902,2.302111065,0.021991382,pos,ns,1.657747469,-0.00026247,0.000135011,-1.944058881,0.052792837,neg,ns,0.856644666,Fam219a,Fam219a_threeUTR,4,41517796,41517845,41517796,41517797,50,-,CGGCTCATGTCTTCCACACACCTTCCTGGAAATAAATTAGTGAGCACGGA,3' UTR,4,41517691,41569509,51819,2,Fam219a-201,51664,1110017D15Rik-201;1110017D15Rik-202;1110017D15Rik-207;Fam219a-201;Fam219a-202;Fam219a-203;Fam219a-204,1110017D15Rik;1110017D15Rik;1110017D15Rik;Fam219a;Fam219a;Fam219a;Fam219a,-463;-463;-468;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,7,71901,ENSMUSG00000028439,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27446,cg13620507,-0.000012,0.00000221,-5.42857586,0.000000115,loss,yes,0.00000825,0.00000376,2.195170179,0.028892505,pos,ns,0.0000644,0.001100471,0.058550757,0.953347658,pos,ns,0.020748696,0.0000511,0.0000378,1.34897081,0.178330859,pos,ns,0.943548754,Pbx1,Pbx1_Exon,1,168191358,168191407,168191406,168191407,50,-,GCATAAATATTGGCTTCCTCTTGAAATTTACCTATGTTCTTCTTGTACCG,"Exon (Pbx1-208/Pbx1, exon 6 of 8)",1,168119364,168432270,312907,2,Pbx1-208,240863,Pbx1-208;Pbx1-205;Pbx1-206;Pbx1-201;Pbx1-202,Pbx1;Pbx1;Pbx1;Pbx1;Pbx1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,84,18514,ENSMUSG00000052534,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2509,cg24328591,-0.00000677,0.00000474,-1.428074171,0.154277171,loss,ns,0.0000177,0.00000806,2.195097355,0.02889778,pos,ns,-0.000985128,0.002361204,-0.417214334,0.676810424,neg,ns,0.169532961,0.0000707,0.0000812,0.87126464,0.3842839,pos,ns,0.909726884,Pkhd1,Pkhd1_Intron,1,20107001,20107050,20107049,20107050,50,-,CCCTGAAATGAAAGTGATCACAATACATCATAGCATTGTGCGAATTAACG,"Intron (Pkhd1-201/Pkhd1, intron 61 of 66)",1,20057779,20618064,560286,2,Pkhd1-201,511014,Pkhd1-201,Pkhd1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,25,241035,ENSMUSG00000043760,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
723,cg07381383,-0.0000115,0.00000544,-2.117728528,0.034993839,loss,ns,0.0000203,0.00000924,2.194013605,0.028976379,pos,ns,0.002227705,0.002708091,0.822610779,0.411361666,pos,ns,0.385776182,-0.0000933,0.0000931,-1.001631209,0.317302933,neg,ns,0.892889147,Nipbl,Nipbl_Exon,15,8306865,8306914,8306913,8306914,50,-,TTTACCTTGCTGTTGCCTTTAAAATCTTCCAGATCAAAATCAAAATGCCG,"Exon (Nipbl-201/Nipbl, exon 37 of 47)",15,8290617,8444463,153847,2,Nipbl-201,137549,Nipbl-201,Nipbl,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,19,36,71175,ENSMUSG00000022141,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18896,cg23220306,-0.0000311,0.0000125,-2.492289071,0.013214249,loss,ns,0.0000465,0.0000212,2.193751172,0.028995439,pos,ns,0.012353688,0.006212367,1.98856367,0.047628374,pos,ns,1.322134245,-0.000578746,0.000213643,-2.708944259,0.007124926,neg,ns,0.782486868,Dach1,Dach1_Intron,14,97858584,97858633,97858584,97858585,50,+,CGTCTGCCAAGCACTTGTAACAGCTGGTGTTACATTAATTAGTTTAAACT,"Intron (Dach1-201/Dach1, intron 6 of 10)",14,97786853,98169543,382691,2,Dach1-201,310910,Dach1-201;Dach1-202;Dach1-203,Dach1;Dach1;Dach1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,76,13134,ENSMUSG00000055639,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26158,cg14509271,-0.00000406,0.00000327,-1.241990735,0.215178774,loss,ns,0.0000122,0.00000556,2.193434683,0.029018441,pos,ns,0.000422931,0.001628312,0.259736112,0.795239747,pos,ns,0.099501921,0.0000185,0.000056,0.331209889,0.740709728,pos,ns,0.054017079,Lmo4,Lmo4_Exon,3,144201884,144201933,144201884,144201885,50,-,CGCCTGGCAGCAGGAGCACTTGAGGCACCGGCTGTGCCAATAGCTGTCCA,Promoter (<=1kb),3,144188530,144202396,13867,2,Lmo4-203,463,Lmo4-203;Lmo4-201;Lmo4-202;Lmo4-207;Lmo4-208;Lmo4-205;Lmo4-204,Lmo4;Lmo4;Lmo4;Lmo4;Lmo4;Lmo4;Lmo4,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,18,54,16911,ENSMUSG00000028266,conserved gene and region,3,144201781,144202038,258,*,258,19,0.635658915,0.729138777,0.073643411,2.76E-12,CpGisland,TRUE,U1,Pr-A
6910,cg03482823,-0.00000765,0.00000648,-1.179085199,0.239268404,loss,ns,0.0000242,0.000011,2.193112171,0.029041896,pos,ns,0.006107886,0.003227179,1.892639204,0.059337296,pos,ns,1.226672245,-0.000161423,0.000110982,-1.454487965,0.146822807,neg,ns,0.876933348,Fyn,Fyn_Exon,10,39526885,39526934,39526885,39526886,50,-,CGGGCCCAGTTTGAAACACTTCAGCAGCTTGTACAACATTACTCAGGTAA,"Exon (Fyn-201/Fyn, exon 8 of 14)",10,39369764,39565381,195618,1,Fyn-201,157121,Fyn-201;Fyn-202;Fyn-204;Fyn-205;Fyn-207;Fyn-206,Fyn;Fyn;Fyn;Fyn;Fyn;Fyn,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,6,14360,ENSMUSG00000019843,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23874,cg21801898,0.00000309,0.0000118,0.261870999,0.793594813,gain,ns,-0.000044,0.0000201,-2.192839991,0.029061703,neg,ns,0.011331547,0.005876467,1.928292407,0.054731815,pos,ns,1.261760153,-0.000211021,0.000202091,-1.044188849,0.297211586,neg,ns,0.799984893,Mosmo,Mosmo_threeUTR,7,120730487,120730536,120730535,120730536,50,-,CTGTATGGCTGCCCTAATATTTCCAATAGGATTTTACATCAATGAAGTCG,3' UTR,7,120677618,120730638,53021,1,Mosmo-202,52869,Mosmo-202;Mosmo-205;Mosmo-201;Mosmo-207;Mosmo-204;Mosmo-203;Mosmo-208;Mosmo-206,Mosmo;Mosmo;Mosmo;Mosmo;Mosmo;Mosmo;Mosmo;Mosmo,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,6,233812,ENSMUSG00000046096,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20444,cg11212712,0.000178778,0.0000123,14.48063876,1.18E-36,gain,yes,-0.000046,0.000021,-2.192439724,0.029090853,neg,ns,0.009969218,0.006144732,1.622400586,0.105734113,pos,ns,0.975784874,-0.000369371,0.000211317,-1.747949836,0.08146273,neg,ns,0.562990888,Hoxc4,Hoxc4_threeUTR,15,103036814,103036863,103036814,103036815,50,-,CGTGATCAATAATAAACCAGTGGATGTGAATTAGTTTTACGTCAATGTCT,3' UTR,15,103034395,103036852,2458,1,Hoxc4-201,2419,Hoxc4-202;Hoxc4-201,Hoxc4;Hoxc4,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,17,91,15423,ENSMUSG00000075394,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
1372,cg13026874,-0.00000436,0.00000534,-0.816240302,0.414989472,loss,ns,-0.0000199,0.00000908,-2.192240262,0.029105389,neg,ns,-0.007043319,0.002659259,-2.648602597,0.008496378,neg,ns,2.070766182,0.0000954,0.0000915,1.042976316,0.297771922,pos,ns,0.878526937,Cadps,Cadps_Intron,14,12455342,12455391,12455342,12455343,50,+,CGTCTATAGAAACAGATGAGAGTGGGTGTTTCTATTGTGACAGATGCCAG,"Intron (Cadps-210/Cadps, intron 21 of 28)",14,12372563,12823053,450491,2,Cadps-210,367662,Cadps-210;Cadps-202;Cadps-203;Cadps-204;Cadps-201;Cadps-208;Cadps-206,Cadps;Cadps;Cadps;Cadps;Cadps;Cadps;Cadps,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,34,27062,ENSMUSG00000054423,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19649,cg13357053,0.0000823,0.0000155,5.301101081,0.000000219,gain,yes,-0.0000578,0.0000264,-2.192042753,0.029119788,neg,ns,0.008958017,0.007725802,1.159493378,0.24714743,pos,ns,0.607043901,-0.000293915,0.00026569,-1.106234117,0.269482922,neg,ns,0.284859652,Gm28267,Gm28267_Intergenic_upstream,9,100272075,100272124,100272123,100272124,50,+,CTGCTGGAATGTTTGATTACATTTTGTTGGCTGACATTACAAATGACACG,Distal Intergenic,9,100404495,100404759,265,1,Gm28267-201,-132371,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,29,29,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16301,cg16592893,-0.000028,0.0000109,-2.584756276,0.010201561,loss,ns,0.0000404,0.0000184,2.191763907,0.029140128,pos,ns,0.002759701,0.005400602,0.510998728,0.609715673,pos,ns,0.214872641,-0.000139618,0.000185726,-0.751739523,0.452778062,neg,ns,0.710091433,Mrm1,Mrm1_Intergenic_downstream,11,84725981,84726030,84726029,84726030,50,-,ATCAACTAATTTGAAAAATATTTAAGAAACTCTGGGTCGTCATCCACTCG,Distal Intergenic,11,84814743,84815390,648,2,Mrm1-203,89409,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,37,42,217038,ENSMUSG00000018405,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14487,cg25623362,0.0000126,0.0000142,0.888410626,0.375008721,gain,ns,-0.000053,0.0000242,-2.191481288,0.029160755,neg,ns,0.060708505,0.007082721,8.571353136,4.92E-16,pos,yes,15.30793299,-0.002137131,0.000243574,-8.774045659,1.17E-16,neg,yes,0.77349899,Ptprd,Ptprd_Exon,4,75950744,75950793,75950792,75950793,50,+,GGCACTCCTTGCTCTGGCCAGTCAGTGAACTGGAACTGCCTTACTGTTCG,"Exon (Ptprd-206/Ptprd, exon 34 of 36)",4,75941238,76449980,508743,2,Ptprd-206,499187,Ptprd-206;Ptprd-204;Ptprd-213;Ptprd-220;Ptprd-203;Ptprd-217;Ptprd-218;Ptprd-219;Ptprd-201,Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,13,32,19266,ENSMUSG00000028399,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8952,cg07333792,0.00000615,0.0000053,1.160387816,0.246783793,gain,ns,-0.0000197,0.000009,-2.191476146,0.029161131,neg,ns,-0.002605221,0.002636446,-0.988156521,0.323846633,neg,ns,0.489660614,0.000084,0.0000907,0.926605218,0.354852361,pos,ns,0.426561546,Gm7422,Gm7422_Intergenic_downstream,12,46399587,46399636,46399635,46399636,50,-,TGATTAATTCTTAACTATGAACATAATTACACTCTCCAGAAGGTAAATCG,Distal Intergenic,12,46478688,46479327,640,2,Gm7422-201,79740,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,664952,NA,mapped to different genes,12,46399635,46399767,133,*,133,12,0.646616541,0.902714932,0.090225564,6.19E-09,CpGisland,TRUE,U9,En-Pp
17150,cg15436903,0.00000249,0.00000459,0.542142261,0.588109991,gain,ns,-0.0000171,0.0000078,-2.191457219,0.029162513,neg,ns,-0.003081225,0.002283727,-1.349209128,0.178254403,neg,ns,0.748959735,-0.0000516,0.0000785,-0.657578653,0.511296873,neg,ns,0.921022795,Rps6-ps2,Rps6-ps2_Intergenic_upstream,8,88793907,88793956,88793955,88793956,50,+,GTAATGAAATTATGCTAATTTGCATTCAGCACCACCAGGCATCCATCACG,Distal Intergenic,8,88806391,88807137,747,1,Rps6-ps2-201,-12435,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,14,675985,NA,mapped to different genes,8,88793955,88794028,74,*,74,10,0.608108108,1.468253968,0.135135135,2.83E-09,CpGisland,TRUE,U15,NS
18368,cg16691593,0.00006,0.00000506,11.86406041,5.08E-27,gain,yes,-0.0000188,0.0000086,-2.191361845,0.029169477,neg,ns,0.007891742,0.002518303,3.13375353,0.001890909,pos,ns,2.723329305,0.0000302,0.0000866,0.348209689,0.727919053,pos,ns,0.143593803,Otp,Otp_Promoter,13,94875509,94875558,94875509,94875510,50,-,CGCTGACATTTGCAGGCTGCCCTCCTGATTGGTCCCCTCGCCGAGCTGCT,Promoter (<=1kb),13,94875602,94885130,9529,1,Otp-201,-93,Otp-201,Otp,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,27,34,18420,ENSMUSG00000021685,conserved gene but different region,13,94875299,94875591,293,*,293,22,0.682593857,0.651111111,0.075085324,2.54E-14,CpGisland,TRUE,U13,Hc-P
20433,cg11716762,-0.0000333,0.0000108,-3.097684595,0.002128897,loss,ns,0.0000401,0.0000183,2.191321149,0.029172449,pos,ns,0.006762285,0.005357375,1.2622383,0.20781182,pos,ns,0.682329755,-0.0000854,0.00018424,-0.463350052,0.643438609,neg,ns,0.15457696,Hoxc4,Hoxc4_Intron,15,103035393,103035442,103035441,103035442,50,+,GTGTGAAAACTATGCTCGCTTTCTAAGGGCGCATAAATAATTCAGTGTCG,"Intron (Hoxc4-202/Hoxc4, intron 3 of 3)",15,103018934,103036405,17472,1,Hoxc4-202,16459,Hoxc4-202;Hoxc4-201,Hoxc4;Hoxc4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,91,15423,ENSMUSG00000075394,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
23418,cg09893939,0.0000415,0.000011,3.782914181,0.000185998,gain,ns,0.0000408,0.0000186,2.191279954,0.029175458,pos,ns,0.015155159,0.005459147,2.776104042,0.005835949,pos,ns,2.233888531,-0.000299076,0.00018774,-1.593038358,0.112170668,neg,ns,0.639410749,Eomes,Eomes_Intergenic_upstream,9,118318957,118319006,118318957,118318958,50,-,CGTGGCAGGGAGGACCACATTTAGCATCTGCCTAAGCAGCTTGTTGGAAG,Distal Intergenic,9,118478212,118485366,7155,1,Eomes-202,-159255,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,8,13813,ENSMUSG00000032446,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4877,cg03989701,0.00000215,0.0000045,0.476712726,0.633902553,gain,ns,-0.0000168,0.00000765,-2.191022491,0.029194268,neg,ns,-0.005523448,0.002241516,-2.464157074,0.014275972,neg,ns,1.845394304,0.0000564,0.0000771,0.73124764,0.465180269,pos,ns,0.876832368,Pbrm1,Pbrm1_Exon,14,31110489,31110538,31110489,31110490,50,+,CGAGCAGGCACCCCTGTGGGGGCTCTCATGGGGGTGGTGCCACCACCAAC,"Exon (Pbrm1-208/Pbrm1, exon 29 of 33)",14,31019138,31120041,100904,1,Pbrm1-208,91351,Pbrm1-208;Pbrm1-207;Pbrm1-206;Pbrm1-203;Pbrm1-217;Pbrm1-212;Pbrm1-202;Pbrm1-205;Pbrm1-210;Pbrm1-201;Pbrm1-204;Smim4-204;Smim4-202,Pbrm1;Pbrm1;Pbrm1;Pbrm1;Pbrm1;Pbrm1;Pbrm1;Pbrm1;Pbrm1;Pbrm1;Pbrm1;Smim4;Smim4,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,5,66923,ENSMUSG00000042323,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11280,cg26868443,0.000242201,0.0000281,8.618302181,3.54E-16,gain,yes,0.000104598,0.0000477,2.190827135,0.029208548,pos,ns,0.039847505,0.013987195,2.848856165,0.004681157,pos,ns,2.329646803,-0.002044315,0.000481018,-4.249971614,0.0000283,neg,ns,0.676690488,Mipol1,Mipol1_Intron,12,57317249,57317298,57317249,57317250,50,-,CGTATTTGCTTTATTCATTCCATCATAATTTGCATTAGAGCTGTGGGTGT,"Intron (Mipol1-207/Mipol1, intron 3 of 6)",12,57230434,57354220,123787,1,Mipol1-207,86815,Mipol1-207;Mipol1-206;Mipol1-205;Mipol1-201;Mipol1-209;Mipol1-208;Mipol1-203,Mipol1;Mipol1;Mipol1;Mipol1;Mipol1;Mipol1;Mipol1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,7,73490,ENSMUSG00000047022,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17135,cg15059951,0.00000401,0.00000471,0.851102843,0.395369167,gain,ns,-0.0000175,0.000008,-2.190795174,0.029210885,neg,ns,0.003537703,0.002343318,1.509698492,0.132138928,pos,ns,0.87896922,-0.000243494,0.0000806,-3.021517368,0.002724656,neg,ns,0.762856386,Brd1,Brd1_Exon,15,88700870,88700919,88700870,88700871,50,+,CGGAAGGACTACAGACAAAAAGGTTTTGGTCCCTAGCTGAGGAGAAGTTG,"Exon (Brd1-203/Brd1, exon 8 of 13)",15,88687034,88734233,47200,2,Brd1-203,33314,Brd1-203;Brd1-202;Brd1-205;Brd1-201,Brd1;Brd1;Brd1;Brd1,0;0;-6;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,223770,ENSMUSG00000022387,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15300,cg06249235,-0.0000025,0.00000217,-1.151169264,0.250549721,loss,ns,0.00000808,0.00000369,2.190771107,0.029212645,pos,ns,0.003167186,0.001080722,2.930619489,0.003634235,pos,ns,2.439587021,-0.0000686,0.0000372,-1.845504096,0.065917725,neg,ns,0.942441564,Rhot1,Rhot1_Exon,11,80257521,80257570,80257521,80257522,50,+,CGGTTACGCTGTATGTGCACCTGCAACAGGTGTACATTTTGCATCTGTCA,"Exon (Rhot1-203/Rhot1, exon 20 of 21)",11,80209019,80266812,57794,1,Rhot1-203,48502,Rhot1-203;Rhot1-202;Rhot1-204;Rhot1-201;Rhot1-206;Rhot1-207;Rhot1-208;Rhot1-211,Rhot1;Rhot1;Rhot1;Rhot1;Rhot1;Rhot1;Rhot1;Rhot1,0;0;0;0;0;0;5024;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,6,59040,ENSMUSG00000017686,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1496,cg19852921,-0.00000942,0.00000804,-1.171652564,0.242236286,loss,ns,0.0000299,0.0000137,2.190759855,0.029213468,pos,ns,0.011282462,0.004001573,2.819506354,0.005119392,pos,ns,2.290781601,-0.000293906,0.000137614,-2.135728884,0.033484836,neg,ns,0.589288446,Phactr2,Phactr2_Exon,10,13261841,13261890,13261889,13261890,50,+,CTACATTTTCCTCTCGGGTAGATTCCTCTCCGATGGGTATCATGTGCCCG,"Exon (Phactr2-203/Phactr2, exon 4 of 13)",10,13207717,13474412,266696,2,Phactr2-203,212522,Phactr2-203;Phactr2-202;Phactr2-204;Phactr2-201,Phactr2;Phactr2;Phactr2;Phactr2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,5,215789,ENSMUSG00000062866,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13093,cg26200801,-0.00000013,0.00000471,-0.027556991,0.978033216,loss,ns,0.0000175,0.000008,2.19074518,0.029214541,pos,ns,0.00841805,0.002344323,3.590823442,0.000383118,pos,ns,3.416667064,-0.000298633,0.0000806,-3.704155699,0.000251056,neg,ns,0.888840863,Ice2,Ice2_fiveUTR,9,69407205,69407254,69407253,69407254,50,-,GGAATGGTTCTTCTTCCAAAACCAAGAGTTCCTTATCCTCGTTTCTCTCG,5' UTR,9,69397906,69433122,35217,1,Ice2-201,9299,Ice2-201;Ice2-206;Ice2-204;Ice2-203;Ice2-207;Ice2-202;Ice2-205;Ice2-210,Ice2;Ice2;Ice2;Ice2;Ice2;Ice2;Ice2;Ice2,0;0;0;0;0;0;0;8557,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,TRUE,FALSE,fiveUTR,1,1,93697,ENSMUSG00000032235,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9397,cg02885212,0.0000448,0.00000844,5.308847472,0.000000211,gain,yes,0.0000314,0.0000143,2.190519498,0.029231048,pos,ns,0.002767896,0.004200448,0.658952483,0.510415434,pos,ns,0.292076202,0.000119671,0.000144453,0.828439704,0.408058886,pos,ns,0.633186778,Otx2,Otx2_Intergenic_downstream,14,48629573,48629622,48629621,48629622,50,+,AGCAAGGTGTAAATTATCAGCGAGGCCCTCTCCATCCACCTGCTTAATCG,Distal Intergenic,14,48658916,48661932,3017,2,Otx2-206,32310,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,15,18424,ENSMUSG00000021848,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18546,cg22916990,0.0000841,0.0000175,4.803190812,0.00000244,gain,ns,0.0000651,0.0000297,2.190427412,0.029237786,pos,ns,0.02120258,0.008710719,2.434079134,0.015494144,pos,ns,1.809832402,0.000215421,0.000299561,0.719124171,0.472606143,pos,ns,0.178781765,Hoxb8,Hoxb8_Exon,11,96282992,96283041,96283040,96283041,50,-,CTCCAAATACAAAACCGGGGAGTCCCTGCGCCCCAATTATTATGACTGCG,"Exon (Hoxb8-201/Hoxb8, exon 1 of 2)",11,96281905,96285315,3411,1,Hoxb8-201,1087,Hoxb7-201;Hoxb8-201;Hoxb8-202;Hoxb8-203,Hoxb7;Hoxb8;Hoxb8;Hoxb8,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,26,15416,ENSMUSG00000056648,mapped to different genes,11,96282929,96283401,473,*,473,44,0.642706131,0.918325023,0.093023256,3.13E-32,CpGisland,TRUE,NA,NRS
21675,cg17923285,-0.00000261,0.00000233,-1.11662385,0.265019914,loss,ns,-0.00000869,0.00000397,-2.190374439,0.029241662,neg,ns,-0.001748124,0.001161643,-1.504871357,0.133375316,neg,ns,0.874924539,-0.0000207,0.0000399,-0.517273931,0.605333832,neg,ns,0.935430562,Yy1,Yy1_Exon,12,108815485,108815534,108815533,108815534,50,-,GGCTGTGGGAAACGCTTTTCACTGGACTTCAATTTGCGCACACATGTGCG,"Exon (Yy1-201/Yy1, exon 5 of 5)",12,108792973,108820148,27176,1,Yy1-201,22512,Yy1-201;Yy1-202,Yy1;Yy1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,22632,ENSMUSG00000021264,mapped to different genes,12,108815481,108815575,95,*,95,8,0.568421053,1.043956044,0.084210526,0.00000796,CpGisland,TRUE,U10,Tr-S
4618,cg09374953,-0.000103591,0.0000126,-8.208295659,6.09E-15,loss,yes,0.000047,0.0000214,2.189898353,0.029276522,pos,ns,0.024292145,0.006281265,3.867397117,0.000134069,pos,ns,3.872670727,-0.000774654,0.000216012,-3.586159167,0.000389753,neg,ns,0.40738631,Ntm,Ntm_Promoter,9,29963182,29963231,29963230,29963231,50,-,GCAATCATTGGTTCTAATCCAAGGATTGACAGAGCTACAACACACGCGCG,Promoter (<=1kb),9,29941548,29963141,21594,2,Ntm-209,-90,Ntm-201;Ntm-204;Ntm-210;Ntm-207;Ntm-209,Ntm;Ntm;Ntm;Ntm;Ntm,0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,5,32,235106,ENSMUSG00000059974,conserved gene but different region,9,29963224,29963231,8,*,8,4,1,2,0.5,0.000000563,CpGisland,TRUE,U15,NS
25061,cg18213001,-0.00000108,0.00000398,-0.271431467,0.786239865,loss,ns,-0.0000148,0.00000676,-2.189392834,0.029313577,neg,ns,-0.007545142,0.001980844,-3.809054162,0.000168185,neg,ns,3.774212893,0.000200732,0.0000681,2.946698347,0.003455448,pos,ns,0.894809544,Slc23a2,Slc23a2_Exon,2,132078490,132078539,132078538,132078539,50,+,AACAGGGGTAACCTAAAAGAAACGAGACCAAAACCATGATCACGGCATCG,"Exon (Slc23a2-201/Slc23a2, exon 6 of 16)",2,132052496,132145108,92613,2,Slc23a2-201,66569,Slc23a2-201;Slc23a2-202;Slc23a2-207,Slc23a2;Slc23a2;Slc23a2,0;0;-482,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,4,54338,ENSMUSG00000027340,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6090,cg18560132,-0.00000547,0.00000326,-1.679277048,0.09410561,loss,ns,0.0000121,0.00000553,2.188979134,0.029343931,pos,ns,0.004368332,0.001621311,2.694321242,0.007437569,pos,ns,2.128569002,-0.000118732,0.0000558,-2.129461523,0.034003769,neg,ns,0.941220098,Kpna1,Kpna1_Exon,16,36012916,36012965,36012964,36012965,50,-,GTTATCAGCACACCAGGAGTAGTGGCCAGGTTTGTGGAGTTCCTCAAACG,"Exon (Kpna1-201/Kpna1, exon 5 of 14)",16,35983315,36037131,53817,1,Kpna1-201,29601,Kpna1-201;Kpna1-209;Kpna1-205;Kpna1-207;Kpna1-210;Kpna1-202,Kpna1;Kpna1;Kpna1;Kpna1;Kpna1;Kpna1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,Exon,2,5,16646,ENSMUSG00000022905,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
780,cg10049513,0.000004,0.00000379,1.057106334,0.291286129,gain,ns,-0.0000141,0.00000644,-2.188903853,0.029349458,neg,ns,-0.00345854,0.001885628,-1.834158195,0.067588898,neg,ns,1.170124633,0.0000773,0.0000648,1.192399522,0.234016556,pos,ns,0.919621491,Pum2,Pum2_threeUTR,12,8713361,8713410,8713361,8713362,50,+,CGTACTCCTGGAAGTCGTCAAGCCTCTCCAACTGAAGTAGTTGAGCGCTT,3' UTR,12,8674134,8751454,77321,1,Pum2-203,39227,Pum2-203;Pum2-216;Pum2-201;Pum2-202;Pum2-207;Pum2-204;Pum2-210;Pum2-209;Pum2-212;Pum2-205;Pum2-208;Pum2-213;Pum2-214,Pum2;Pum2;Pum2;Pum2;Pum2;Pum2;Pum2;Pum2;Pum2;Pum2;Pum2;Pum2;Pum2,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,7,11,80913,ENSMUSG00000020594,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
401,cg26626645,-0.00000742,0.00000221,-3.356136147,0.000888754,loss,ns,0.00000822,0.00000376,2.188839038,0.029354217,pos,ns,0.00178419,0.001100506,1.621245172,0.105981706,pos,ns,0.974769095,-0.0000878,0.0000378,-2.320979242,0.020936383,neg,ns,0.94849548,Zfhx4,Zfhx4_threeUTR,3,5415180,5415229,5415228,5415229,50,+,AATTGCTTTTGCCTTTTTCATGAATGTTAAGCAGCAGCATTGTGAGATCG,3' UTR,3,5218554,5415855,197302,1,Zfhx4-201,196626,Zfhx4-203;Zfhx4-201;Zfhx4-205,Zfhx4;Zfhx4;Zfhx4,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,77,80892,ENSMUSG00000025255,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5040,cg25496747,-0.00000376,0.00000314,-1.198719588,0.231552537,loss,ns,0.0000117,0.00000533,2.188805345,0.029356691,pos,ns,0.005559671,0.001562594,3.557974436,0.000432193,pos,ns,3.364322081,-0.000158303,0.0000537,-2.945861375,0.003464553,neg,ns,0.930499163,A1cf,A1cf_Exon,19,31934610,31934659,31934658,31934659,50,-,GCCTTCTTACGTTCCTAGAAATTTACATGAATGTACCTGTAGGGGCTGCG,"Exon (A1cf-202/A1cf, exon 9 of 12)",19,31868764,31948573,79810,1,A1cf-202,65846,A1cf-204;A1cf-202;A1cf-201;A1cf-203,A1cf;A1cf;A1cf;A1cf,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,2,69865,ENSMUSG00000052595,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
616,cg15173558,0.000000718,0.00000386,0.185888641,0.852653664,gain,ns,-0.0000144,0.00000656,-2.188312522,0.0293929,neg,ns,-0.005534348,0.001921361,-2.880430295,0.004248045,neg,ns,2.371810906,0.0000798,0.0000661,1.208086718,0.227934699,pos,ns,0.894230705,Mark2,Mark2_Exon,19,7278057,7278106,7278057,7278058,50,-,CGGTCTTTGCTTTCAGGTTCATTCAGGTTCCTCAAAAAACAGAGCGAGGG,Promoter (<=1kb),19,7276852,7278094,1243,2,Mark2-218,0,Mark2-202;Mark2-206;Mark2-201;Mark2-221;Mark2-209;Mark2-203;Mark2-211;Mark2-207;Mark2-218;Mark2-215;Mark2-212;Mark2-208;Mark2-219;Mark2-204;Mark2-205;Rcor2-201;Rcor2-202,Mark2;Mark2;Mark2;Mark2;Mark2;Mark2;Mark2;Mark2;Mark2;Mark2;Mark2;Mark2;Mark2;Mark2;Mark2;Rcor2;Rcor2,0;0;0;0;0;0;0;0;0;0;0;0;0;3835;5004;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,10,13728,ENSMUSG00000024969,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22641,cg21816476,-0.00000595,0.00000424,-1.404532903,0.161161369,loss,ns,-0.0000158,0.0000072,-2.188298237,0.02939395,neg,ns,-0.006761214,0.002109161,-3.205641564,0.001488141,neg,ns,2.827355913,0.0001553,0.0000725,2.141066411,0.033048274,pos,ns,0.819734718,BC052040,BC052040_Intergenic_upstream,2,115538537,115538586,115538585,115538586,50,+,AGTTGACTAAGATTAATGACACTGCGCCAGCTTCTTTGTTTCTCTCTGCG,Distal Intergenic,2,115581716,115778768,197053,1,BC052040-203,-43130,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,9,49,399568,ENSMUSG00000040282,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7840,cg25019254,-0.0000385,0.0000123,-3.124081978,0.001952191,loss,ns,0.0000458,0.0000209,2.188095614,0.029408849,pos,ns,0.004718739,0.006126691,0.770193732,0.441771512,pos,ns,0.354802294,-0.00012317,0.000210696,-0.584585664,0.559251548,neg,ns,0.517237113,Gm12455,Gm12455_Intergenic_downstream,4,44508603,44508652,44508651,44508652,50,+,AATTGGGCCCCGGATGAGTTTGGTCGACAGGGCCATTCATCATGTGGCCG,Distal Intergenic,4,44382922,44383337,416,1,Gm12455-201,125681,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,15,15,,NA,mapped to different genes,4,44508566,44508719,154,*,154,13,0.662337662,0.784482759,0.084415584,2.76E-09,CpGisland,TRUE,U15,NS
9647,cg21898740,-0.00000199,0.00000338,-0.590006862,0.555615855,loss,ns,0.0000126,0.00000574,2.188053764,0.029411927,pos,ns,0.003516517,0.001682739,2.089758242,0.037454294,pos,ns,1.426498384,-0.000128513,0.0000579,-2.220752093,0.0270903,neg,ns,0.931518416,Cnot6,Cnot6_Exon,11,49680004,49680053,49680004,49680005,50,-,CGAGAGGCTTTATCAATAATGTTCTTCACTTCTGAGAGGAACATCATAGT,"Exon (Cnot6-203/Cnot6, exon 10 of 12)",11,49671503,49712723,41221,2,Cnot6-203,32670,Cnot6-203;Cnot6-202;Cnot6-201;Cnot6-204;Cnot6-205;Gm12191-201,Cnot6;Cnot6;Cnot6;Cnot6;Cnot6;Gm12191,0;0;0;0;2672;-947,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,5,104625,ENSMUSG00000020362,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10114,cg04317399,0.0000727,0.00000695,10.46784984,3.71E-22,gain,yes,-0.0000258,0.0000118,-2.18791609,0.029422054,neg,ns,0.002516934,0.003457984,0.727861698,0.467247644,pos,ns,0.33045288,-0.000154687,0.00011892,-1.300764369,0.194305198,neg,ns,0.088261783,Gm28308,Gm28308_fiveUTR,6,52191649,52191698,52191649,52191650,50,+,CGATGTAGTTGGAGTTTATCAAAAACGAGCTCATGGTCATTAATTTGTGA,5' UTR,6,52163359,52213339,49981,2,Gm28308-201,21641,Gm28308-201;Hoxa3-201;Hoxa4-201,Gm28308;Hoxa3;Hoxa4,0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,21,103,,NA,mapped to different genes,6,52191054,52191675,622,*,622,87,0.782958199,0.917964377,0.139871383,1.99E-80,CpGisland,TRUE,NA,NRS
18414,cg06487289,0.0000359,0.0000154,2.322037793,0.020878531,gain,ns,-0.0000574,0.0000262,-2.187041943,0.02948643,neg,ns,0.017239105,0.007688254,2.242265291,0.025651015,pos,ns,1.590895451,-0.000745783,0.000264398,-2.820677317,0.005101218,neg,ns,0.636495479,Chst2,Chst2_Exon,9,95404763,95404812,95404763,95404764,50,-,CGCTCATAGCCCAGGACGGCCATGGGCTGGTAGCAAAACTCCTCCACCTG,"Exon (Chst2-201/Chst2, exon 2 of 2)",9,95399292,95406722,7431,2,Chst2-201,1910,Chst2-201,Chst2,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,54371,ENSMUSG00000033350,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
13740,cg08565106,-0.00000122,0.00000953,-0.127696041,0.898472318,loss,ns,0.0000354,0.0000162,2.186342856,0.029538001,pos,ns,0.004256658,0.004742476,0.897560402,0.370116498,pos,ns,0.431661555,0.000103236,0.000163093,0.632985488,0.527209775,pos,ns,0.840469221,Alk,Alk_Intron,17,72326227,72326276,72326227,72326228,50,+,CGAATTAAATCATGCGATAATTCAATTGGAAAATTGGGTGTAATTATGGA,"Intron (Alk-201/Alk, intron 3 of 28)",17,71868972,72603827,734856,2,Alk-201,277551,Alk-201;Alk-203;Alk-202,Alk;Alk;Alk,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,11682,ENSMUSG00000055471,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16551,cg09414503,-0.0000238,0.000008,-2.973213898,0.003178103,loss,ns,-0.0000297,0.0000136,-2.18621503,0.029547439,neg,ns,-0.010466853,0.003984055,-2.627186062,0.009037455,neg,ns,2.043953837,0.000116716,0.000137011,0.851871327,0.394943114,pos,ns,0.866873948,Bcas3,Bcas3_Intron,11,85431178,85431227,85431226,85431227,50,-,ACTGTGGCTGAACTTTTTACCCTAATTACCTCCTGCTAATGCCTGCAGCG,"Intron (Bcas3-204/Bcas3, intron 8 of 15)",11,85353167,85510991,157825,1,Bcas3-204,78011,Bcas3-204;Bcas3-205;Bcas3-206;Bcas3-201;Bcas3-202,Bcas3;Bcas3;Bcas3;Bcas3;Bcas3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,24,192197,ENSMUSG00000059439,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15735,cg17063811,-0.0000372,0.0000112,-3.329472714,0.000975086,loss,ns,0.0000415,0.000019,2.186186883,0.029549518,pos,ns,0.008715877,0.005558715,1.567966128,0.117909187,pos,ns,0.928452357,-0.00040624,0.000191164,-2.1250879,0.034369981,neg,ns,0.705746966,Dmd,Dmd_Intron,X,83044372,83044421,83044420,83044421,50,+,GTCTTGCCTGACATTTCATCAAAAGCTGTGTTGATTTGCAATGTTTACCG,"Intron (Dmd-205/Dmd, intron 1 of 6)",20,82948870,83492739,543870,1,Dmd-205,95502,Dmd-205;Dmd-203;Dmd-211,Dmd;Dmd;Dmd,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,28,13405,ENSMUSG00000045103,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8365,cg23449513,0.0000479,0.00000784,6.115698051,2.89E-09,gain,yes,-0.0000291,0.0000133,-2.1861191,0.029554524,neg,ns,0.00146348,0.003902016,0.375057335,0.707874294,pos,ns,0.150043858,0.000143341,0.00013419,1.068197295,0.28626263,pos,ns,0.907652865,Prr12,Prr12_Exon,7,45051229,45051278,45051277,45051278,50,+,TGGTTGGTGGCATAGCTTTGCAGTGGGTGGGGGGCCGCATAGGCCTGGCG,"Exon (Prr12-201/Prr12, exon 2 of 14)",7,45027563,45052881,25319,2,Prr12-201,1603,Prr12-201;Prrg2-208;Prrg2-201;Prrg2-210;Prrg2-204;Prrg2-211;Prrg2-207;Prrg2-209;Prrg2-203;Prrg2-206;Prrg2-205,Prr12;Prrg2;Prrg2;Prrg2;Prrg2;Prrg2;Prrg2;Prrg2;Prrg2;Prrg2;Prrg2,0;11399;10374;3602;10427;10428;10380;11399;11126;10398;11069,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,233210,ENSMUSG00000046574,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
15374,cg24677779,-0.00000364,0.00000203,-1.7947698,0.073664483,loss,ns,0.00000754,0.00000345,2.186117001,0.029554679,pos,ns,0.002964977,0.001010039,2.935508512,0.003578997,pos,ns,2.44623863,-0.0000932,0.0000347,-2.683632139,0.007673869,neg,ns,0.949193205,Nckap1,Nckap1_Exon,2,80545047,80545096,80545047,80545048,50,+,CGAAAGAGAGAGAGGCAAGAGCTACTTTGAAGAGCTAGTTTCCAAAGGTT,"Exon (Nckap1-201/Nckap1, exon 9 of 31)",2,80500512,80581264,80753,2,Nckap1-201,36168,Gm13689-201;Nckap1-201;Nckap1-202;Nckap1-203;Nckap1-204,Gm13689;Nckap1;Nckap1;Nckap1;Nckap1,5300;0;0;9974;9694,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,7,50884,ENSMUSG00000027002,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25041,cg05044089,-0.00000589,0.00000248,-2.375147878,0.018149972,loss,ns,0.00000921,0.00000421,2.185966324,0.02956581,pos,ns,-0.001613989,0.001234414,-1.307494233,0.192013781,neg,ns,0.716667601,0.0000873,0.0000425,2.055653953,0.040653152,pos,ns,0.93343982,Fgfr2,Fgfr2_Intron,7,131778373,131778422,131778421,131778422,50,+,TCAATACTGTTAAAAATGGGGCTGACAGATTGCCGACAATAGGAGCAACG,"Intron (Fgfr2-217/Fgfr2, intron 2 of 6)",7,130162451,133123350,2960900,2,Fgfr2-217,1344928,Fgfr2-217,Fgfr2,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,58,79,14183,ENSMUSG00000030849,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25289,cg05715367,0.00000315,0.00000344,0.916635468,0.360046224,gain,ns,-0.0000128,0.00000584,-2.185850771,0.029574349,neg,ns,-0.002417041,0.001712205,-1.411654235,0.159054708,neg,ns,0.798453473,0.0000408,0.0000589,0.693087664,0.48877346,pos,ns,0.934289044,Tmem183a,Tmem183a_threeUTR,1,134353108,134353157,134353108,134353109,50,-,CGGCTCCAGTGTCCCACACAAGCTATGCTACTGAAAAGAGAGAGAGGGGG,3' UTR,1,134346097,134361979,15883,2,Tmem183a-201,8822,Tmem183a-201;Tmem183a-205;Tmem183a-204;Tmem183a-203;Tmem183a-202,Tmem183a;Tmem183a;Tmem183a;Tmem183a;Tmem183a,0;0;-2803;0;8533,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,2,57439,ENSMUSG00000042305,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3745,cg15479464,-0.00000117,0.00000147,-0.797074008,0.426018104,loss,ns,0.00000545,0.00000249,2.185577854,0.029594524,pos,ns,0.00194161,0.000730843,2.656671332,0.008300196,pos,ns,2.080911644,-0.0000616,0.0000251,-2.451317789,0.014785184,neg,ns,0.969940777,AW554918,AW554918_Intron,18,25241088,25241137,25241088,25241089,50,-,CGTACATCCCATTAACCGCCATCAGGGCTGGAAAACATGCTGAACTGTTC,"Intron (AW554918-204/AW554918, intron 4 of 8)",18,25168999,25463725,294727,1,AW554918-204,72089,AW554918-204;AW554918-201;AW554918-207;AW554918-202;AW554918-208;AW554918-205;AW554918-203,AW554918;AW554918;AW554918;AW554918;AW554918;AW554918;AW554918,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,3,225289,ENSMUSG00000033632,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27686,cg04221461,0.0000122,0.00000534,2.281115363,0.023219698,gain,ns,-0.0000198,0.00000907,-2.18531261,0.029614144,neg,ns,-0.003043056,0.002656025,-1.145718451,0.252795342,neg,ns,0.597230933,0.000280158,0.0000913,3.067184295,0.00235136,pos,ns,0.76436456,Akt3,Akt3_Intron,1,177150550,177150599,177150598,177150599,50,+,ATAATAACTTCTTTGTGCTTCCCTACAATGCAGCTGCTTAAACCATTTCG,"Intron (Akt3-201/Akt3, intron 1 of 12)",1,177020073,177248805,228733,2,Akt3-201,98206,Akt3-201;Akt3-203;Akt3-202,Akt3;Akt3;Akt3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,14,23797,ENSMUSG00000019699,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10138,cg21927438,0.00000355,0.00000147,2.417076624,0.016222674,gain,ns,0.00000546,0.0000025,2.184839817,0.029649144,pos,ns,0.001450723,0.000732015,1.981820637,0.048382291,pos,ns,1.315313569,-0.00000911,0.0000252,-0.361993523,0.717603501,neg,ns,0.964513851,Chd8,Chd8_Exon,14,52202144,52202193,52202144,52202145,50,+,CGCTAGAAATCGGGGATCAACAGCAAACTCTGGATGACCCTGTAACCACA,"Exon (Gm26590-202/Gm26590-202, exon 1 of 3)",14,52198151,52237572,39422,2,Chd8-201,35379,Chd8-201;Chd8-212;Chd8-215;Chd8-207;Chd8-216;Chd8-206;Chd8-209;Chd8-203;Chd8-204;Supt16-201,Chd8;Chd8;Chd8;Chd8;Chd8;Chd8;Chd8;Chd8;Chd8;Supt16,0;0;0;0;0;0;0;0;5510;-4728,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,12,67772,ENSMUSG00000053754,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22359,cg25354714,-0.000000146,0.00000207,-0.070746518,0.943645115,loss,ns,0.00000768,0.00000351,2.184829468,0.02964991,pos,ns,0.002822682,0.001029316,2.742287517,0.00645593,pos,ns,2.190041178,-0.0000802,0.0000354,-2.26625373,0.024124942,neg,ns,0.953961875,Far1,Far1_Exon,7,113568147,113568196,113568147,113568148,50,+,CGCATTTTTATTGCAAGATCACAAATGGCAAGAAATATCTGGTACTTTGT,"Exon (Far1-201/Far1, exon 13 of 13)",7,113513834,113571511,57678,1,Far1-201,54313,Far1-201;Far1-202;Far1-211;Far1-209;Far1-208,Far1;Far1;Far1;Far1;Far1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,67420,ENSMUSG00000030759,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15068,cg12407846,-0.000126946,0.0000241,-5.277049605,0.000000247,loss,yes,-0.0000893,0.0000409,-2.184756322,0.029655328,neg,ns,0.038938489,0.011973037,3.25218147,0.001271435,pos,ns,2.89570578,-0.001344654,0.000411752,-3.265690298,0.001214248,neg,ns,0.604210889,Setbp1,Setbp1_Intron,18,78792442,78792491,78792442,78792443,50,+,CGATAGTGATGAACTCCCAGCTAATAAACACAGAGTGCTTATTTCGGCAG,"Intron (Setbp1-201/Setbp1, intron 4 of 5)",18,78750380,79109391,359012,2,Setbp1-201,316900,Setbp1-201,Setbp1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,9,240427,ENSMUSG00000024548,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11538,cg26296879,-0.0000035,0.00000196,-1.783719836,0.075447334,loss,ns,-0.00000729,0.00000334,-2.184404352,0.029681411,neg,ns,-0.000870079,0.000977295,-0.890293143,0.373998905,neg,ns,0.427129669,0.00000408,0.0000336,0.121369689,0.903476856,pos,ns,0.960375443,Shtn1,Shtn1_Exon,19,59060627,59060676,59060675,59060676,50,-,AAACCTTCTCCTTTGTTTTCTGGTTCTCTGCTCTAAGGTCTTCATATTCG,"Exon (Shtn1-202/Shtn1, exon 2 of 15)",19,58973356,59076069,102714,2,Shtn1-202,15393,Shtn1-202;Shtn1-201,Shtn1;Shtn1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,10,71653,ENSMUSG00000041362,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20369,cg14483235,0.0000248,0.00000729,3.408854826,0.000738618,gain,ns,-0.000027,0.0000124,-2.183813635,0.029725232,neg,ns,0.006509382,0.003627554,1.794427434,0.073719197,pos,ns,1.132419402,-0.000233789,0.000124751,-1.874040308,0.061865318,neg,ns,0.247067361,Hoxc5,Hoxc5_Exon,15,103014153,103014202,103014201,103014202,50,-,TGGGAACTATGGATCGGCCTCAGAGGTGCAGGCATCCAGGTACTGCTACG,"Exon (Hoxc5-201/Hoxc5, exon 1 of 2)",15,102967443,103015676,48234,1,Hoxc5-202,46710,Hoxc4-202;Hoxc5-202;Hoxc5-201;Hoxc6-202;Hoxc6-203;Hoxc6-201,Hoxc4;Hoxc5;Hoxc5;Hoxc6;Hoxc6;Hoxc6,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,72,134,15424,ENSMUSG00000022485,mapped to different genes,15,103014167,103014734,568,*,568,41,0.588028169,0.835773758,0.072183099,1.73E-25,CpGisland,TRUE,U13,Hc-P
5139,cg04168829,-0.00000297,0.00000238,-1.24460802,0.214215987,loss,ns,0.00000884,0.00000405,2.183409156,0.029755269,pos,ns,0.000687614,0.001186195,0.579680329,0.562551248,pos,ns,0.249837907,-0.00000381,0.0000408,-0.093288983,0.925734246,neg,ns,0.942577541,Bach2,Bach2_fiveUTR,4,32501621,32501670,32501621,32501622,50,-,CGGCATGTCTGTGGATGAGAAGCCTGACTCCCCCATGTATGTGTATGAGT,5' UTR,4,32238804,32586104,347301,1,Bach2-202,262817,Bach2-202;Bach2-201;Bach2-205;Bach2-207;Bach2-204,Bach2;Bach2;Bach2;Bach2;Bach2,0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,14,12014,ENSMUSG00000040270,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22791,cg06892949,0.0000702,0.0000126,5.582811815,5.17E-08,gain,yes,0.0000466,0.0000214,2.183257766,0.029766519,pos,ns,0.008702447,0.006255731,1.391115929,0.16518787,pos,ns,0.782021846,-0.000000149,0.000215134,-0.00069274,0.999447719,neg,ns,0.395933586,Dmbx1,Dmbx1_Intergenic_upstream,4,115955268,115955317,115955316,115955317,50,-,GGGGACCAGGCATCAGATTGGAGTCAAGATTCCGAGAGTGTCATTTGCCG,Distal Intergenic,4,115915119,115939926,24808,2,Dmbx1-203,-15391,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,15,42,140477,ENSMUSG00000028707,mapped to different genes,4,115955251,115955377,127,*,127,13,0.661417323,0.971176471,0.102362205,2.30E-10,CpGisland,TRUE,U13,Hc-P
2784,cg27113985,-0.00000121,0.00000232,-0.520593331,0.603021713,loss,ns,0.00000862,0.00000395,2.183228887,0.029768665,pos,ns,0.000703618,0.001156762,0.608265186,0.543457001,pos,ns,0.264834812,-0.000047,0.0000398,-1.180859065,0.238563917,neg,ns,0.940805866,Wdpcp,Wdpcp_Intron,11,21694439,21694488,21694439,21694440,50,-,CGGTGCAATCTATATTTCCTTGGCATGTGTCACACAGATGGTGCCGTGCT,"Intron (Wdpcp-201/Wdpcp, intron 8 of 17)",11,21572235,21898989,326755,1,Wdpcp-201,122204,Wdpcp-201;Wdpcp-205;Wdpcp-204;Wdpcp-206,Wdpcp;Wdpcp;Wdpcp;Wdpcp,0;0;0;-641,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,7,216560,ENSMUSG00000020319,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24844,cg24007102,-0.00000822,0.00000188,-4.361794266,0.0000176,loss,ns,0.00000699,0.0000032,2.183225924,0.029768885,pos,ns,0.000437402,0.000937978,0.466324233,0.641310949,pos,ns,0.192931346,-0.0000268,0.0000323,-0.831193491,0.406504075,neg,ns,0.950673752,Gm4410,Gm4410_Intron,3,128856711,128856760,128856759,128856760,50,+,TCACACATGCATTTTTAATCAGGATTATATTTCACAGAGATCTGTCACCG,"Intron (Gm43824-201/Gm43824-201, intron 4 of 4)",3,128839836,128840521,686,1,Gm4410-201,16875,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,13,100043393,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5912,cg22879070,-0.00000236,0.00000246,-0.958102601,0.33875764,loss,ns,0.00000912,0.00000418,2.183161304,0.029773688,pos,ns,0.003669848,0.001223813,2.998700712,0.002930883,pos,ns,2.533001554,-0.000095,0.0000421,-2.257412587,0.024677929,neg,ns,0.955945343,Ctnna1,Ctnna1_fiveUTR,18,35222071,35222120,35222071,35222072,50,+,CGTAAAGAAAGAAGTGATGCACTCAATTCTGCAATAGATAAAATGACCAA,5' UTR,18,35118859,35254779,135921,1,Ctnna1-201,103212,Ctnna1-201;Ctnna1-204;Ctnna1-210;Ctnna1-203;Ctnna1-202,Ctnna1;Ctnna1;Ctnna1;Ctnna1;Ctnna1,0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,13,12385,ENSMUSG00000037815,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1630,cg07776022,-0.0000114,0.0000101,-1.119726161,0.263697264,loss,ns,0.0000376,0.0000172,2.18251393,0.029821844,pos,ns,0.017978562,0.005049825,3.560234409,0.000428636,pos,ns,3.367910948,-0.000409345,0.000173663,-2.357120047,0.019038768,neg,ns,0.770653164,Zfp521,Zfp521_Intron,18,13899094,13899143,13899094,13899095,50,+,CGAAATGTTATTGATCCCGGTGTGACAAATCAAGAGTTAGGTAATGTCTA,"Intron (Zfp521-201/Zfp521, intron 3 of 7)",18,13687013,13972787,285775,2,Zfp521-201,73644,Zfp521-201;Zfp521-204;Zfp521-203;Zfp521-202,Zfp521;Zfp521;Zfp521;Zfp521,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,81,225207,ENSMUSG00000024420,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26674,cg11154463,0.00000889,0.00000272,3.270272429,0.001195399,gain,ns,-0.0000101,0.00000462,-2.182290912,0.029838449,neg,ns,-0.003477937,0.001353399,-2.569780318,0.010643415,neg,ns,1.972918995,0.000102212,0.0000465,2.196061034,0.028828045,pos,ns,0.928839409,Fry,Fry_Exon,5,150477949,150477998,150477997,150477998,50,+,CCTAACCTGTGATGCAGCCAGTTACCTTGGAGATAACCTCCGGGGAATCG,"Exon (Fry-201/Fry, exon 56 of 61)",5,150259767,150497753,237987,1,Fry-201,218182,Fry-201;Fry-218;Fry-212;Fry-203;Fry-206,Fry;Fry;Fry;Fry;Fry,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,320365,ENSMUSG00000056602,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5727,cg19733291,0.000000601,0.00000393,0.152820976,0.878638876,gain,ns,0.0000146,0.00000668,2.182242734,0.029842037,pos,ns,0.001267901,0.001957935,0.647570543,0.517742027,pos,ns,0.28588658,0.0000151,0.0000673,0.223982976,0.822918092,pos,ns,0.894118112,Mapkap1,Mapkap1_Intergenic_downstream,2,34632175,34632224,34632223,34632224,50,+,AGGATAATTGTTTTTGGAATGACCCCAATATTTTCACCCCGGCGACCCCG,Distal Intergenic,2,34619582,34623919,4338,1,Mapkap1-205,12593,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,59,227743,ENSMUSG00000038696,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1908,cg02620514,-0.0000019,0.00000179,-1.061052511,0.28949198,loss,ns,0.00000664,0.00000304,2.182084313,0.029853838,pos,ns,0.00228442,0.000892067,2.560816523,0.010915994,pos,ns,1.961936728,-0.0000958,0.0000307,-3.121875279,0.001966427,neg,ns,0.956889814,Ythdf3,Ythdf3_Exon,3,16205191,16205240,16205239,16205240,50,+,TTTGAAGTTAAATGGATCTTTGTCAAAGATGTTCCCAATAACCAATTACG,"Exon (Ythdf3-201/Ythdf3, exon 4 of 5)",3,16183212,16217037,33826,1,Ythdf3-201,21979,Ythdf3-201;Ythdf3-204;Ythdf3-203;Ythdf3-202,Ythdf3;Ythdf3;Ythdf3;Ythdf3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,8,229096,ENSMUSG00000047213,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19299,cg24796395,-0.0000351,0.0000105,-3.34805796,0.000914128,loss,ns,0.0000389,0.0000178,2.181976566,0.029861867,pos,ns,0.012461009,0.005217488,2.388315796,0.017524052,pos,ns,1.756365456,-0.000460325,0.000179429,-2.565497452,0.010772884,neg,ns,0.756655484,Dock7,Dock7_threeUTR,4,98946706,98946755,98946706,98946707,50,-,CGAACTTGGTTCCATAAAAACCAACACGAAAATAGGTGCCAAACATCCGC,3' UTR,4,98936671,99120915,184245,2,Dock7-201,174160,Dock7-201;Dock7-217;Dock7-205;Dock7-204;Dock7-202;Dock7-214;Dock7-209;Dock7-213;Dock7-203;Dock7-215,Dock7;Dock7;Dock7;Dock7;Dock7;Dock7;Dock7;Dock7;Dock7;Dock7,0;0;0;0;0;0;-1501;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,9,67299,ENSMUSG00000028556,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11329,cg00748659,-0.00000191,0.00000115,-1.664358665,0.097051173,loss,ns,0.00000424,0.00000195,2.181721241,0.0298809,pos,ns,0.001600964,0.000569924,2.80908504,0.005283749,pos,ns,2.27705782,-0.0000358,0.0000196,-1.827716967,0.068553133,neg,ns,0.967814999,Gm49361,Gm49361_threeUTR,14,57643379,57643428,57643427,57643428,50,+,AGGTTAGTTCCTCTCAGAAGACACCTCAGGCAGGTGGCAGCTAATCACCG,3' UTR,14,57642077,57746103,104027,2,Gm49361-201,102675,Gm49361-201;Xpo4-209;Xpo4-201;Xpo4-208;Xpo4-203;Xpo4-207;Xpo4-205;Xpo4-202;Xpo4-204;Xpo4-206,Gm49361;Xpo4;Xpo4;Xpo4;Xpo4;Xpo4;Xpo4;Xpo4;Xpo4;Xpo4,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27392,cg18261844,-0.0000138,0.00000483,-2.864756024,0.004458269,loss,ns,0.0000179,0.0000082,2.18168135,0.029883875,pos,ns,0.001570577,0.002402833,0.653635563,0.51383116,pos,ns,0.289179563,-0.0000815,0.0000826,-0.986504815,0.324654785,neg,ns,0.063717961,Pou2f1,Pou2f1_fiveUTR,1,166002527,166002576,166002575,166002576,50,-,ATGAATATGAATATGTAAAATGCTGTAATGATTACCTGCTGCTGCTGCCG,Promoter (<=1kb),1,165865154,166002678,137525,2,Pou2f1-208,102,Pou2f1-208;Pou2f1-206;Pou2f1-216;Pou2f1-209;Pou2f1-201;Pou2f1-215;Pou2f1-214;Pou2f1-211;Pou2f1-212,Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,18,18986,ENSMUSG00000026565,conserved gene and region,1,166002575,166002857,283,*,283,35,0.71024735,1.103252395,0.123674912,1.89E-30,CpGisland,TRUE,U1,Pr-A
20191,cg00862376,0.0000324,0.00000502,6.451440694,4.26E-10,gain,yes,-0.0000186,0.00000854,-2.181612237,0.029889029,neg,ns,0.001962132,0.002500704,0.784631799,0.433268656,pos,ns,0.363242728,0.0000275,0.000086,0.319893947,0.749264216,pos,ns,0.089393299,Hoxc12,Hoxc12_Promoter,15,102931897,102931946,102931945,102931946,50,-,TACACACAGAGGAGGTGTCGTCTCCAGTCTAGACAAGGGCGCTAATAACG,Promoter (4-5kb),15,102936757,102938609,1853,1,Hoxc12-201,-4860,Hoxc12-201;Hoxc13-201,Hoxc12;Hoxc13,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,6,15421,ENSMUSG00000050328,conserved gene and region,15,102931859,102932082,224,*,224,16,0.647321429,0.714513557,0.071428571,3.20E-10,CpGisland,TRUE,U13,Hc-P
1843,cg19724028,-0.00000224,0.00000201,-1.115166477,0.265642838,loss,ns,0.00000744,0.00000341,2.181549235,0.029893728,pos,ns,0.001428685,0.000998496,1.430836016,0.153484464,pos,ns,0.813935578,-0.0000257,0.0000343,-0.749434312,0.454163799,neg,ns,0.963011683,Gli3,Gli3_Intron,13,15543751,15543800,15543799,15543800,50,+,TATTCCGAAATACCAGAAATAGGACGTAAGCTCTGATCAGGGAGACTGCG,"Intron (Gli3-202/Gli3, intron 2 of 11)",13,15463235,15715091,251857,1,Gli3-202,80516,Gli3-202;Gli3-204;Gli3-203;Gli3-201,Gli3;Gli3;Gli3;Gli3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,19,21,14634,ENSMUSG00000021318,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8319,cg20751142,0.0000999,0.0000165,6.059819023,3.95E-09,gain,yes,-0.0000611,0.000028,-2.181444407,0.029901548,neg,ns,0.029781025,0.008201284,3.631263634,0.000329883,pos,ns,3.481639928,-0.000856019,0.000282041,-3.035080259,0.00260847,neg,ns,0.439838865,Zeb2,Zeb2_Exon,2,45001774,45001823,45001822,45001823,50,+,CAGCAGTTGGGCAAAAGCATCTGGAGTTCCAGGTGGCAGGTCTGTAGCCG,"Exon (Zeb2-212/Zeb2, exon 7 of 11)",2,44983632,45117395,133764,2,Zeb2-212,115572,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-227;Zeb2-216;Zeb2-229;Zeb2-218;Zeb2-222,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,21,158,24136,ENSMUSG00000026872,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
7483,cg00847238,-0.00000363,0.00000193,-1.877409321,0.06140086,loss,ns,-0.00000716,0.00000328,-2.18121131,0.029918944,neg,ns,-0.000239269,0.000961323,-0.248895847,0.803606165,neg,ns,0.09495674,-0.0000133,0.0000331,-0.402857181,0.687330972,neg,ns,0.948533476,Sec63,Sec63_Exon,10,42783450,42783499,42783450,42783451,50,-,CGATTAAAGAATATCAGAAAAGTATATGGAAGGTGTATGTGGTATCGTTT,"Exon (Sec63-201/Sec63, exon 2 of 21)",10,42761496,42832514,71019,1,Sec63-201,21954,Sec63-201;Sec63-205;Sec63-204,Sec63;Sec63;Sec63,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,140740,ENSMUSG00000019802,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8379,cg11812837,0.0000106,0.00000765,1.386905901,0.166466877,gain,ns,0.0000283,0.000013,2.181194081,0.02992023,pos,ns,0.009218437,0.003807234,2.421295036,0.016039155,pos,ns,1.794818517,-0.000205362,0.00013093,-1.568480544,0.117789165,neg,ns,0.694935754,Zeb2,Zeb2_Intron,2,45070801,45070850,45070849,45070850,50,+,TATAACTCCAACAGCACATCATAAAATTCCTATAATTCTTCAAAGCCACG,"Intron (Zeb2-212/Zeb2, intron 3 of 10)",2,44983632,45117395,133764,2,Zeb2-212,46545,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3553,cg19169042,0.00000342,0.00000651,0.525603751,0.599539305,gain,ns,-0.0000241,0.0000111,-2.181160393,0.029922745,neg,ns,-0.007034664,0.003238549,-2.172165422,0.030600809,neg,ns,1.514267097,0.000274347,0.000111373,2.463307662,0.014309174,pos,ns,0.831670752,Lpp,Lpp_Intron,16,24491048,24491097,24491096,24491097,50,-,CACATTAGTCACATATCCCAGAAGTTTAATACAGAATTATTTTGACAGCG,"Intron (Lpp-205/Lpp, intron 3 of 6)",16,24393507,24685183,291677,1,Lpp-205,97541,Lpp-205;Lpp-201;Lpp-204;Lpp-202,Lpp;Lpp;Lpp;Lpp,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,7,210126,ENSMUSG00000033306,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
20582,cg11839293,-0.0000021,0.00000443,-0.473214786,0.636392989,loss,ns,0.0000164,0.00000752,2.18110175,0.029927123,pos,ns,0.006392415,0.002203706,2.900756748,0.003988884,pos,ns,2.399148593,-0.00017361,0.0000758,-2.290819555,0.022644723,neg,ns,0.93287933,Srek1,Srek1_fiveUTR,13,103764375,103764424,103764375,103764376,50,-,CGAAAGTTGTGTTACACATGACAACCGTTCGTGTTGGCTGCATCACTAAT,Promoter (<=1kb),13,103739348,103764582,25235,2,Srek1-204,158,Srek1-204;Srek1-201;Srek1-210;Srek1-205;Srek1-209;Srek1-206;Srek1-202;Srek1-208,Srek1;Srek1;Srek1;Srek1;Srek1;Srek1;Srek1;Srek1,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,7,10,218543,ENSMUSG00000032621,mapped to different genes,13,103764328,103764416,89,*,89,9,0.516853933,1.525714286,0.101123596,0.000000335,CpGisland,TRUE,U11,Tr-P
19297,cg20350922,-0.00000353,0.00000343,-1.027792094,0.304848909,loss,ns,0.0000127,0.00000583,2.181042091,0.029931578,pos,ns,0.005735774,0.001707186,3.359782568,0.000877517,pos,ns,3.056744305,-0.000151427,0.0000587,-2.579242951,0.010362282,neg,ns,0.929563341,Foxp1,Foxp1_Intron,6,98945126,98945175,98945174,98945175,50,+,CAGGCTCATTTTCACTGTTGTGTGAAATGAATTTCCTAATAATCACATCG,"Intron (Foxp1-206/Foxp1, intron 13 of 17)",6,98925338,99266515,341178,2,Foxp1-206,321340,Foxp1-206;Foxp1-204;Foxp1-220;Foxp1-230;Foxp1-225;Foxp1-201;Foxp1-205;Foxp1-207;Foxp1-208;Foxp1-226;Foxp1-228;Foxp1-221;Foxp1-222;Foxp1-210,Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,87,108655,ENSMUSG00000030067,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19623,cg18618304,0.00000749,0.00000569,1.31674971,0.188895129,gain,ns,-0.0000211,0.00000966,-2.180784409,0.029950826,neg,ns,-0.003464111,0.002830494,-1.223853844,0.22193673,neg,ns,0.653770818,0.0000345,0.0000973,0.354641737,0.723099135,pos,ns,0.876240279,Dip2b,Dip2b_Exon,15,100151309,100151358,100151357,100151358,50,-,GAGGTCAAAGGAACCAGTGGGTCTCTAGCTGATGTATTTGCCAATACTCG,"Exon (Dip2b-202/Dip2b, exon 5 of 38)",15,100038664,100219473,180810,1,Dip2b-202,112645,Dip2b-202;Dip2b-201,Dip2b;Dip2b,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,8,239667,ENSMUSG00000023026,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10825,cg15740979,0.0000249,0.00000404,6.145131228,2.45E-09,gain,yes,-0.000015,0.00000687,-2.180621855,0.029962973,neg,ns,-0.002466885,0.002013149,-1.225386328,0.221359873,neg,ns,0.654901104,0.0000413,0.0000692,0.596073248,0.551561268,pos,ns,0.881001486,Fam193b,Fam193b_Exon,13,55549170,55549219,55549218,55549219,50,-,ACTTTGGGCTCCGTGCTGTTGATGAATTCCAGCAGCTCATCCACATCTCG,"Exon (Fam193b-201/Fam193b, exon 7 of 11)",13,55539316,55571100,31785,2,Fam193b-206,21881,Fam193b-206;Fam193b-201;Fam193b-204;Fam193b-203,Fam193b;Fam193b;Fam193b;Fam193b,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,11,212483,ENSMUSG00000021495,conserved gene but different region,13,55549137,55549352,216,*,216,14,0.652777778,0.612145749,0.064814815,1.86E-08,CpGisland,TRUE,U10,Tr-S
16724,cg20379577,0.000117355,0.0000187,6.283814502,1.12E-09,gain,yes,-0.0000692,0.0000317,-2.180211344,0.029993669,neg,ns,0.036685697,0.009295152,3.946756032,0.0000981,pos,ns,4.008525739,-0.001082994,0.00031966,-3.387960949,0.000795042,neg,ns,0.358685749,Med13,Med13_Exon,11,86271005,86271054,86271053,86271054,50,+,AAGTTATATAACTGATTCAGCACCACAAAATGAATTGGGAGACATGAGCG,"Exon (Med13-201/Med13, exon 30 of 30)",11,86267033,86357602,90570,2,Med13-201,86548,Med13-201;Med13-202;Med13-203,Med13;Med13;Med13,0;7546;7938,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,12,327987,ENSMUSG00000034297,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16234,cg10003699,-0.0000037,0.00000644,-0.574663478,0.565935702,loss,ns,0.0000238,0.0000109,2.179785808,0.030025517,pos,ns,0.000506268,0.003205157,0.157954074,0.874595826,pos,ns,0.0581926,0.0000181,0.000110225,0.163959814,0.869869626,pos,ns,0.918295686,Dmd,Dmd_Intron,X,84629204,84629253,84629204,84629205,50,-,CGATAGTCACAGCTGGTTGTAGAAGAGAGCAATTTTTAAAATGCTATTTC,"Intron (Dmd-203/Dmd, intron 54 of 78)",20,82948903,85206141,2257239,1,Dmd-203,1680301,Dmd-203;Dmd-215;Dmd-210,Dmd;Dmd;Dmd,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,28,13405,ENSMUSG00000045103,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11801,cg08125125,-0.0000543,0.0000161,-3.369488648,0.000848248,loss,ns,-0.0000596,0.0000274,-2.178933253,0.030089412,neg,ns,0.003938981,0.008018199,0.491255112,0.623593635,pos,ns,0.205098326,-0.000675701,0.000275745,-2.450452761,0.014820063,neg,ns,0.764782989,Synpo,Synpo_Intron,18,60648410,60648459,60648458,60648459,50,+,TTTGTTTCCGAGCATATGGGATATTTCATACATACTGAAGACATTAGCCG,"Intron (Synpo-207/Synpo, intron 2 of 3)",18,60605883,60660142,54260,2,Synpo-207,11683,Synpo-209;Synpo-207;Synpo-210;Synpo-208,Synpo;Synpo;Synpo;Synpo,0;0;0;-138,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,3,104027,ENSMUSG00000043079,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16266,cg11700167,0.00000612,0.00000556,1.100335934,0.272039476,gain,ns,-0.0000206,0.00000945,-2.178193877,0.03014492,neg,ns,-0.002849797,0.002768313,-1.029434566,0.304078028,neg,ns,0.51701496,-0.0000107,0.0000952,-0.112450713,0.910538828,neg,ns,0.894208881,Zdhhc5,Zdhhc5_Exon,2,84692361,84692410,84692409,84692410,50,-,CCATTATCCATGATCTTCACAGTTATCTGCCCATCTGAAACTTCTGGTCG,"Exon (Zdhhc5-201/Zdhhc5, exon 8 of 12)",2,84687970,84715180,27211,2,Zdhhc5-201,22770,Med19-201;Med19-202;Zdhhc5-201,Med19;Med19;Zdhhc5,13959;6728;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,228136,ENSMUSG00000034075,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5638,cg11719502,-0.00000823,0.00000336,-2.450803404,0.014805916,loss,ns,0.0000124,0.00000571,2.178034405,0.030156904,pos,ns,0.002175312,0.001672157,1.300901745,0.194258223,pos,ns,0.711620589,-0.000092,0.0000575,-1.600170025,0.110579458,neg,ns,0.924483987,Sox2,Sox2_Intron,3,34443799,34443848,34443847,34443848,50,+,ATTATTATTCTGAGAATGTACTAATTTGTTACATCCAAGATGACGGTTCG,"Intron (Sox2ot-204/Sox2ot-204, intron 2 of 3)",3,34650405,34652461,2057,1,Sox2-201,-206557,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,34,62,20674,ENSMUSG00000074637,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16703,cg22980065,-0.00000858,0.00000789,-1.086888935,0.277930271,loss,ns,0.0000292,0.0000134,2.178034264,0.030156914,pos,ns,0.008725287,0.003928391,2.221084334,0.02706755,pos,ns,1.567551053,-0.000235587,0.000135097,-1.743836826,0.082178812,neg,ns,0.757884786,Gpatch2l,Gpatch2l_Intron,12,86192196,86192245,86192196,86192197,50,+,CGTGGGAGTCCATTCATTTTAATAAGAGGTACACCCTGTGTTATTAAGAA,"Intron (Gm805-201/Gm805-201, intron 4 of 4)",12,86241858,86291784,49927,1,Gpatch2l-204,-49613,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,17,70373,ENSMUSG00000021254,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17641,cg00251344,0.0000642,0.00000663,9.679353391,1.56E-19,gain,yes,-0.0000245,0.0000113,-2.177917602,0.030165684,neg,ns,-0.005398315,0.00329934,-1.636180052,0.102816725,neg,ns,0.987936233,0.0000753,0.000113464,0.663727124,0.50735828,pos,ns,0.180945591,Zic1,Zic1_threeUTR,9,91360733,91360782,91360781,91360782,50,+,ATCACTTTACATAAACAAATGGAACAGTTTGACACGCAGATCCAGGCTCG,3' UTR,9,91358058,91365768,7711,2,Zic1-201,4986,Zic1-201;Zic1-202;Zic1-203;Zic4-208,Zic1;Zic1;Zic1;Zic4,0;0;2272;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,10,22771,ENSMUSG00000032368,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
14303,cg17691933,-0.0000223,0.000019,-1.172939441,0.241720577,loss,ns,0.0000703,0.0000323,2.177757118,0.030177751,pos,ns,-0.003188727,0.009450863,-0.337400671,0.736043215,neg,ns,0.133096686,0.000253523,0.000325014,0.780036507,0.43596454,pos,ns,0.448428995,Rps6-ps4,Rps6-ps4_Intergenic_downstream,2,75138565,75138614,75138565,75138566,50,-,CGAGTAATGAAATAATCATGTCCAGAAATGTATCAAAGGCCAGAGGGATT,Distal Intergenic,2,75191073,75191822,750,2,Rps6-ps4-201,53257,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,4,105244208,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
4889,cg13145648,-0.000012,0.00000851,-1.409202608,0.159777581,loss,ns,-0.0000315,0.0000145,-2.17760589,0.030189126,neg,ns,-0.001181083,0.004233929,-0.278956763,0.780464007,neg,ns,0.107647121,-0.000666315,0.000145604,-4.576196505,0.00000686,neg,ns,0.906710342,Snx17,Snx17_threeUTR,5,31196473,31196522,31196521,31196522,50,+,CCTCACAGTTATTGGGACTCTGCCTATGATGACGATGTCATGGAGAACCG,3' UTR,5,31193227,31198900,5674,1,Snx17-201,3246,Eif2b4-201;Eif2b4-203;Eif2b4-212;Eif2b4-202;Eif2b4-204;Eif2b4-208;Eif2b4-210;Eif2b4-209;Snx17-201;Snx17-205;Snx17-202;Snx17-204;Snx17-210;Snx17-208;Snx17-207;Snx17-211;Snx17-209;Snx17-206;Snx17-203;Zfp513-202;Zfp513-201;Zfp513-205;Zfp513-207;Zfp513-203;Zfp513-204;Zfp513-208;Zfp513-206,Eif2b4;Eif2b4;Eif2b4;Eif2b4;Eif2b4;Eif2b4;Eif2b4;Eif2b4;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Zfp513;Zfp513;Zfp513;Zfp513;Zfp513;Zfp513;Zfp513;Zfp513,-3043;-3334;-3465;-3459;-4826;-3334;-3474;-3055;0;0;0;0;0;0;0;1630;0;0;0;0;0;0;3764;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,4,266781,ENSMUSG00000029146,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16516,cg19962757,-0.0000315,0.000012,-2.629328884,0.008981959,loss,ns,0.0000443,0.0000203,2.177559106,0.030192645,pos,ns,0.021095453,0.005957503,3.540989137,0.000459824,pos,ns,3.337407905,-0.000179813,0.000204878,-0.877659439,0.380808242,neg,ns,0.904089094,Camkmt,Camkmt_Intron,17,85320071,85320120,85320119,85320120,50,-,GTGGCACTTGGGGACCTTTTTGCTTTAGGTCGAAGGCTTTTCAGACTGCG,"Intron (Camkmt-201/Camkmt, intron 3 of 10)",17,85090552,85458588,368037,1,Camkmt-201,229519,Camkmt-201,Camkmt,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,41,44,73582,ENSMUSG00000071037,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15832,cg21762834,-0.00000683,0.00000363,-1.879756825,0.061078947,loss,ns,0.0000134,0.00000617,2.177098332,0.030227329,pos,ns,0.003859214,0.001807656,2.134927203,0.033550832,pos,ns,1.474296702,-0.000180216,0.0000622,-2.898982557,0.004010916,neg,ns,0.929516375,Gm7569,Gm7569_Exon,18,83633841,83633890,83633841,83633842,50,+,CGGGGAGTAAGGAACAGATTAAATTAGCATAGTATTAGATATGGAAAATG,"Exon (Gm31621-203/Gm31621-203, exon 4 of 4)",18,83488012,83488522,511,2,Gm7569-201,-145319,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,4,665284,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27731,cg17136937,-0.00000731,0.00000369,-1.980137648,0.048572024,loss,ns,-0.0000136,0.00000627,-2.176996901,0.030234969,neg,ns,0.000739164,0.00183633,0.402522169,0.687577197,pos,ns,0.162678535,-0.00000452,0.0000632,-0.071563159,0.942995706,neg,ns,0.933909302,Cdc42bpa,Cdc42bpa_Exon,1,180094040,180094089,180094088,180094089,50,-,ATCAATGAGCGGCTAACAGAATTGCACACCCAAAAACAGAAACTTGCTCG,"Exon (Cdc42bpa-203/Cdc42bpa, exon 13 of 35)",1,179960472,180163156,202685,1,Cdc42bpa-203,133568,Cdc42bpa-203;Cdc42bpa-204;Cdc42bpa-208;Cdc42bpa-201;Cdc42bpa-202;Cdc42bpa-218;Cdc42bpa-210,Cdc42bpa;Cdc42bpa;Cdc42bpa;Cdc42bpa;Cdc42bpa;Cdc42bpa;Cdc42bpa,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,10,226751,ENSMUSG00000026490,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11179,cg26000775,0.00000494,0.00000231,2.140785161,0.033071155,gain,ns,0.00000853,0.00000392,2.176945311,0.030238855,pos,ns,0.003632678,0.001147925,3.164560613,0.001707346,pos,ns,2.767678464,-0.0000574,0.0000395,-1.454287984,0.146878186,neg,ns,0.94744485,Satb2,Satb2_Exon,1,56845635,56845684,56845683,56845684,50,+,TCTCCTGTTGGATCTCGTCATAAATGGCAGCTGTGATGTTGATGTTGGCG,"Exon (Satb2-201/Satb2, exon 8 of 10)",1,56793981,56972502,178522,2,Satb2-201,126818,Satb2-201;Satb2-202;Satb2-205,Satb2;Satb2;Satb2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,33,212712,ENSMUSG00000038331,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4026,cg23600014,-0.00000221,0.00000774,-0.285160968,0.775711244,loss,ns,0.0000286,0.0000131,2.176898955,0.030242348,pos,ns,-0.005219204,0.003850089,-1.355606162,0.176211277,neg,ns,0.753966301,0.00036332,0.000132404,2.744018114,0.00642281,pos,ns,0.622911439,Gm45647,Gm45647_Intergenic_upstream,8,26526704,26526753,26526752,26526753,50,+,ACTTGGGCTGTAAAACAGACGCTTACATTAGCAGTCCTGACAGAGCCGCG,Distal Intergenic,8,26780315,26780509,195,1,Gm45647-201,-253562,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,46,62,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9031,cg17362055,-0.00000413,0.00000383,-1.076541008,0.282522443,loss,ns,0.0000142,0.00000651,2.176702568,0.030257147,pos,ns,0.005361883,0.001908174,2.809955534,0.005269839,pos,ns,2.278202641,-0.000122007,0.0000656,-1.859248102,0.063939309,neg,ns,0.932870142,Gm8863,Gm8863_Intergenic_downstream,9,46660507,46660556,46660555,46660556,50,-,TTTTTGAGTAAATCTTTCAGTGCAAAATTAATGTCGCAGTATTAGAGCCG,Distal Intergenic,9,46713233,46714158,926,2,Gm8863-201,53651,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,20,667890,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9800,cg00874125,0.0000401,0.0000301,1.329038438,0.184812624,gain,ns,-0.000111445,0.0000512,-2.176535404,0.03026975,neg,ns,0.012738131,0.015000692,0.849169567,0.39644222,pos,ns,0.4018201,-0.000916313,0.000515873,-1.776239968,0.07667414,neg,ns,0.549557684,Trps1,Trps1_Promoter,15,50893456,50893505,50893504,50893505,50,+,CTTACAGTTCCAGTGCCTGTAATCACAATGATTTTACCTGATGGAACACG,Promoter (2-3kb),15,50846176,50890463,44288,2,Trps1-208,-2993,Trps1-202;Trps1-206;Trps1-204;Trps1-205;Trps1-201;Trps1-208,Trps1;Trps1;Trps1;Trps1;Trps1;Trps1,0;0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,9,36,83925,ENSMUSG00000038679,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8612,cg14512347,0.0000383,0.00000438,8.742529443,1.47E-16,gain,yes,-0.0000162,0.00000744,-2.176422126,0.030278292,neg,ns,-0.001303034,0.00217901,-0.597993692,0.550280754,neg,ns,0.259415676,0.000116497,0.0000749,1.55462474,0.121055757,pos,ns,0.900425806,Btrc,Btrc_Exon,19,45446658,45446707,45446706,45446707,50,-,GCACCGTATGGCAGAGGGTCAGTAATCAGTGTCATCGTGCCTTTAAATCG,"Exon (Btrc-208/Btrc, exon 1 of 1)",19,45363734,45507736,144003,1,Btrc-204,82924,Btrc-204;Btrc-201;Btrc-210;Btrc-202;Btrc-203;Btrc-208;Btrc-205;Btrc-209;Gm6807-201,Btrc;Btrc;Btrc;Btrc;Btrc;Btrc;Btrc;Btrc;Gm6807,0;0;0;0;0;0;0;0;4488,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,30,98,12234,ENSMUSG00000025217,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19021,cg10694470,0.0000292,0.0000044,6.6472895,1.35E-10,gain,yes,-0.0000163,0.00000747,-2.176202789,0.030294839,neg,ns,-0.000834241,0.002188662,-0.381164967,0.703341938,neg,ns,0.152833486,-0.00000811,0.0000753,-0.107786818,0.914234527,neg,ns,0.099213582,Prdm8,Prdm8_Intron,5,98180816,98180865,98180816,98180817,50,+,CGCGTCATTGGGCAGATTATGTGCAGCAAACAAAAAGTGTGTGTCTGCGT,"Intron (Prdm8-202/Prdm8, intron 1 of 4)",5,98167198,98187454,20257,1,Prdm8-202,13618,Prdm8-202;Prdm8-201,Prdm8;Prdm8,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,10,77630,ENSMUSG00000035456,conserved gene and region,5,98180684,98180819,136,*,136,10,0.632352941,0.777587193,0.073529412,0.00000115,CpGisland,TRUE,U13,Hc-P
23343,cg17049911,0.0000555,0.0000132,4.216185831,0.0000326,gain,ns,-0.0000487,0.0000224,-2.176046111,0.030306663,neg,ns,0.010244641,0.006556213,1.562585197,0.119170434,pos,ns,0.92383148,0.0000024,0.000225468,0.010660205,0.991501405,pos,ns,0.033995189,Socs3,Socs3_Exon,11,117968158,117968207,117968206,117968207,50,-,AGGTCTTGAGGCGCAGGCTGGTGTCCAGGGGGCGGCTCATCCCGGCGGCG,Promoter (<=1kb),11,117966079,117969186,3108,2,Socs3-201,979,Socs3-201;Socs3-202;Socs3-203,Socs3;Socs3;Socs3,0;1840;1244,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,9,12702,ENSMUSG00000053113,conserved gene and region,11,117967759,117969258,1500,*,1500,136,0.671333333,0.805559943,0.090666667,1.37E-96,CpGisland,TRUE,NA,NRS
14531,cg19961864,0.00000477,0.0000159,0.299672818,0.764627563,gain,ns,-0.0000588,0.000027,-2.175731846,0.030330392,neg,ns,0.041752316,0.007918395,5.272825687,0.000000252,pos,ns,6.597859287,-0.001096379,0.000272313,-4.026172331,0.0000713,neg,ns,0.431643074,Nrip1,Nrip1_Intron,16,76321803,76321852,76321803,76321804,50,-,CGAGATGCCTGCAGGCGCCCTTGTACTGGATTTGCAAGACAAAAACCTTC,"Intron (Nrip1-202/Nrip1, intron 3 of 3)",16,76287400,76373827,86428,2,Nrip1-202,51975,Nrip1-202;Nrip1-201;Nrip1-208;Nrip1-204;Nrip1-207,Nrip1;Nrip1;Nrip1;Nrip1;Nrip1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,8,268903,ENSMUSG00000048490,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U5,En-Sd
23752,cg05866252,-0.0000019,0.0000109,-0.173739842,0.862183321,loss,ns,0.0000404,0.0000186,2.175499791,0.030347924,pos,ns,0.022400729,0.005447112,4.112404882,0.0000502,pos,ns,4.299232661,-0.000507205,0.000187326,-2.7076112,0.007152928,neg,ns,0.161135415,Foxo6,Foxo6_Intron,4,120269709,120269758,120269757,120269758,50,+,CAATCTCGCGGTGACTGATTAAGCCCTGTTTAGAACTAATTGCTCTTTCG,"Intron (Foxo6-201/Foxo6, intron 1 of 1)",4,120267079,120287349,20271,2,Foxo6-201,17591,Foxo6-201,Foxo6,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,14,42,329934,ENSMUSG00000052135,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
9148,cg19277827,-0.0000121,0.00000756,-1.598550102,0.110939312,loss,ns,0.000028,0.0000129,2.175197774,0.030370755,pos,ns,0.005417745,0.003765045,1.438959088,0.15117101,pos,ns,0.820531486,-0.00017494,0.00012948,-1.351104362,0.177647252,neg,ns,0.833228394,Gm4791,Gm4791_Intron,9,47148293,47148342,47148293,47148294,50,-,CGAGATTCTCATTTGGCTCAGGCATTAGGTCTAAATGAAATATTTAGTTG,"Intron (Gm31698-201/Gm31698-201, intron 1 of 2)",9,46998741,47003860,5120,1,Gm4791-201,149601,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,18,215467,ENSMUSG00000094893,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25432,cg24431884,0.0000489,0.00000874,5.600195554,4.72E-08,gain,yes,0.0000323,0.0000148,2.175022179,0.030384036,pos,ns,0.010265799,0.004348933,2.360532806,0.018867638,pos,ns,1.72428247,0.0000013,0.000149559,0.008692239,0.993070275,pos,ns,0.594369591,Gm5904,Gm5904_Intergenic_upstream,7,136491203,136491252,136491251,136491252,50,-,AAATAAGATGTCGCCCTGTTTGTATTCATTATCAGTTCTTACATGCTCCG,Distal Intergenic,7,136657209,136658073,865,1,Gm5904-201,-166006,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,14,17,546009,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18481,cg23078256,-0.00000273,0.00000149,-1.835463659,0.067394847,loss,ns,0.00000549,0.00000252,2.174956207,0.030389027,pos,ns,0.002144917,0.000739379,2.900968888,0.003986257,pos,ns,2.399434706,-0.0000573,0.0000254,-2.253279525,0.024940203,neg,ns,0.971428956,Xrn1,Xrn1_Exon,9,95988840,95988889,95988840,95988841,50,-,CGATTATTGGAAGCCATGGAGACATGTAACCACTCCCTCAAAAAGGAAGA,"Exon (Xrn1-201/Xrn1, exon 16 of 42)",9,95954760,96053027,98268,1,Xrn1-201,34080,Xrn1-201;Xrn1-202;Xrn1-207;Xrn1-204;Xrn1-209,Xrn1;Xrn1;Xrn1;Xrn1;Xrn1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,24127,ENSMUSG00000032410,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6914,cg16975050,0.00000165,0.00000432,0.381289654,0.70324952,gain,ns,-0.000016,0.00000734,-2.174665427,0.030411034,neg,ns,-0.005525193,0.00214905,-2.570992966,0.010607011,neg,ns,1.974406983,0.00000365,0.0000739,0.049379443,0.96064871,pos,ns,0.899283648,Rims2,Rims2_Exon,15,39534845,39534894,39534893,39534894,50,-,GAAGCAGCAGATAGACAGCCATATCACAGATCCAGATCAACAGAACAACG,"Exon (Rims2-205/Rims2, exon 17 of 26)",15,39198332,39681940,483609,1,Rims2-202,336513,Rims2-202;Rims2-205;Rims2-201;Rims2-206,Rims2;Rims2;Rims2;Rims2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,16,19,116838,ENSMUSG00000037386,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7658,cg19112767,0.0000028,0.00000798,0.350504347,0.726198276,gain,ns,-0.0000295,0.0000136,-2.174518474,0.030422161,neg,ns,0.001259307,0.003971406,0.317093492,0.75138611,pos,ns,0.124136837,-0.000374447,0.000136576,-2.741670092,0.006467784,neg,ns,0.753140003,Rgp1,Rgp1_threeUTR,4,43584727,43584776,43584727,43584728,50,+,CGGAGGGAGGCATTTCCTGGGGATGGTTAATCCTGTGCCCCAGCCAAACC,3' UTR,4,43578715,43587487,8773,1,Rgp1-202,6012,Msmp-201;Rgp1-202;Rgp1-203;Rgp1-204;Rgp1-201;Rgp1-206;Rgp1-207,Msmp;Rgp1;Rgp1;Rgp1;Rgp1;Rgp1;Rgp1,-233;0;0;0;0;0;3513,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,2,242406,ENSMUSG00000028468,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17652,cg23449696,0.000170735,0.0000105,16.26932422,1.87E-43,gain,yes,-0.0000388,0.0000178,-2.174326282,0.030436719,neg,ns,0.015242528,0.005223129,2.918275495,0.003777184,pos,ns,2.422831805,-0.000112475,0.000179623,-0.626173419,0.53166198,neg,ns,0.170192151,Zic4,Zic4_Intron,9,91367223,91367272,91367271,91367272,50,+,GTCACCCTTGTCACAGTTATTGAAATTCCGCAACTCGCCACACCAGGACG,"Intron (Zic4-208/Zic4, intron 1 of 2)",9,91362413,91378915,16503,1,Zic4-208,4810,Zic1-201;Zic1-202;Zic1-203;Zic4-208;Zic4-206;Zic4-207;Zic4-211;Zic4-204;Zic4-203;Zic4-210;Zic4-209;Zic4-212,Zic1;Zic1;Zic1;Zic4;Zic4;Zic4;Zic4;Zic4;Zic4;Zic4;Zic4;Zic4,0;0;-4169;0;0;0;0;0;0;-3732;0;-4078,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,55,22774,ENSMUSG00000036972,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
5279,cg13087967,-0.0000147,0.00000443,-3.323059413,0.000996985,loss,ns,0.0000163,0.00000752,2.174322216,0.030437027,pos,ns,-0.001236244,0.00220281,-0.56121251,0.575058124,neg,ns,0.240288257,-0.0000516,0.0000758,-0.681383083,0.496137818,neg,ns,0.89492846,Ranbp17,Ranbp17_Intron,11,33299853,33299902,33299901,33299902,50,-,TTCTGAAGACACATCTTAATAACCTCTAAATAGTTCCAACAAAAGAGCCG,"Intron (Ranbp17-202/Ranbp17, intron 19 of 27)",11,33211795,33513746,301952,2,Ranbp17-202,213844,Ranbp17-202;Ranbp17-206;Ranbp17-203;Ranbp17-205,Ranbp17;Ranbp17;Ranbp17;Ranbp17,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,31,66011,ENSMUSG00000040594,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24355,cg00868376,-0.0000516,0.00000961,-5.367756265,0.000000157,loss,yes,0.0000355,0.0000163,2.174184969,0.030447426,pos,ns,-0.0014238,0.004784486,-0.297586867,0.766217826,neg,ns,0.115647748,0.000289393,0.000164538,1.758819265,0.079594809,pos,ns,0.878787474,Trim67,Trim67_Exon,8,124826153,124826202,124826201,124826202,50,+,ATGCTGGGCAAGGATGACAAGGCCTGGGCCATGTATGTGGACAACAACCG,"Exon (Trim67-201/Trim67, exon 8 of 11)",8,124793092,124834702,41611,1,Trim67-201,33061,Trim67-201;Trim67-202;Trim67-203,Trim67;Trim67;Trim67,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,330863,ENSMUSG00000036913,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7793,cg16424163,-0.00000171,0.00000115,-1.48876128,0.137566818,loss,ns,0.00000423,0.00000195,2.173968776,0.030463814,pos,ns,0.001143085,0.000570327,2.004263847,0.045911363,pos,ns,1.338079817,-0.0000121,0.0000196,-0.618028493,0.537010328,neg,ns,0.964473159,Melk,Melk_Intron,4,44319605,44319654,44319605,44319606,50,-,CGCAGTGTAATACAGTCTGCTGGTTGAATCTAATTAAGGTGTCGTATCAC,"Intron (Melk-201/Melk, intron 8 of 17)",4,44300876,44364675,63800,1,Melk-201,18729,Melk-201;Melk-203;Melk-202;Melk-204,Melk;Melk;Melk;Melk,0;0;16037;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,3,17279,ENSMUSG00000035683,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9418,cg17396081,0.0000431,0.00000582,7.408198455,1.22E-12,gain,yes,-0.0000215,0.00000988,-2.173856608,0.03047232,neg,ns,-0.005828952,0.002895712,-2.012959955,0.044983086,neg,ns,1.346950758,0.000106724,0.0000996,1.071709846,0.284684003,pos,ns,0.867257258,Zbtb16,Zbtb16_Intron,9,48678533,48678582,48678533,48678534,50,+,CGATTTAATCAGACAAGCCAGCCAGCGTGGCTTGGAGTAAAAACGGATAA,"Intron (Zbtb16-201/Zbtb16, intron 4 of 6)",9,48654297,48835945,181649,2,Zbtb16-201,157363,Zbtb16-201;Zbtb16-202,Zbtb16;Zbtb16,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,37,235320,ENSMUSG00000066687,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21756,cg21391782,0.00000472,0.00000382,1.237007574,0.21702052,gain,ns,-0.0000141,0.00000648,-2.173744362,0.030480833,neg,ns,-0.004264436,0.001898781,-2.245881135,0.025415746,neg,ns,1.59489714,0.0000238,0.0000653,0.364284275,0.715894091,pos,ns,0.866186022,Zfhx3,Zfhx3_Exon,8,108956916,108956965,108956964,108956965,50,+,CTCAAGTTCATGCAGCACCTCAGGGGTTCAGCCCTCGATGCCAACAGACG,"Exon (Zfhx3-204/Zfhx3, exon 16 of 16)",8,107942644,108961630,1018987,1,Zfhx3-204,1014272,Zfhx3-204;Zfhx3-201,Zfhx3;Zfhx3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,46,177,11906,ENSMUSG00000038872,conserved gene and region,8,108956951,108957024,74,*,74,9,0.608108108,1.316205534,0.121621622,6.35E-08,CpGisland,TRUE,NA,NRS
13052,cg06017394,0.000000485,0.00000214,0.22681126,0.820719999,gain,ns,0.00000789,0.00000363,2.173492704,0.030499928,pos,ns,0.003718173,0.001063325,3.496741902,0.000539781,pos,ns,3.267782679,-0.0000807,0.0000366,-2.206295604,0.028096371,neg,ns,0.951306413,Chd3,Chd3_Exon,11,69346545,69346594,69346593,69346594,50,-,TTTGAGGGGTGCGGGGTGAAGACTTACGCAGCGTTGTGGGCCCTCCCCCG,"Exon (Chd3-211/Chd3, exon 5 of 8)",11,69343273,69348610,5338,2,Chd3-203,2016,Chd3-205;Chd3-203;Chd3-202;Chd3-211;Chd3-201;Chd3-204;Chd3-208;Rnf227-201;Rnf227-203,Chd3;Chd3;Chd3;Chd3;Chd3;Chd3;Chd3;Rnf227;Rnf227,0;0;0;0;0;0;0;6084;5774,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,22,26,216848,ENSMUSG00000018474,conserved gene and region,11,69346504,69346858,355,*,355,27,0.676056338,0.691010021,0.076056338,1.34E-17,CpGisland,TRUE,U10,Tr-S
24139,cg02722823,-0.00000839,0.00000301,-2.783349389,0.005710343,loss,ns,0.0000111,0.00000512,2.17331347,0.030513534,pos,ns,0.001699182,0.001499872,1.132884803,0.25813807,pos,ns,0.588147941,-0.0000492,0.0000516,-0.953157096,0.341253086,neg,ns,0.936973709,Zfp105,Zfp105_Exon,9,122930471,122930520,122930519,122930520,50,+,TATTGTGCACCAGAGAATTCACACTGCAGAGAAACCTTACGACTGCAGCG,"Exon (Zfp105-201/Zfp105, exon 4 of 4)",9,122923072,122931028,7957,1,Zfp105-201,7399,Zfp105-201;Zfp105-202,Zfp105;Zfp105,0;7372,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,22646,ENSMUSG00000057895,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19486,cg09371715,0.00000519,0.00000583,0.889541753,0.374401761,gain,ns,0.0000215,0.00000991,2.1732079,0.030521551,pos,ns,0.002091274,0.002903982,0.720140298,0.471981237,pos,ns,0.326075266,-0.0000406,0.0000999,-0.406681238,0.684522748,neg,ns,0.780069433,Pja1,Pja1_Intron,X,99410118,99410167,99410118,99410119,50,+,CGGATATCTTGGTTCCATATTTTCCACGCTGAGGCTCAGTTTACTCCTGG,"Intron (Gm14812-201/Gm14812-201, intron 6 of 6)",20,99466146,99470672,4527,2,Pja1-204,60505,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,17,18744,ENSMUSG00000034403,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19929,cg22489710,0.00000183,0.00000134,1.36585575,0.172974347,gain,ns,0.00000496,0.00000228,2.172904941,0.030544566,pos,ns,0.00162999,0.000668372,2.438744567,0.015299365,pos,ns,1.815326592,-0.0000163,0.000023,-0.710740954,0.477779154,neg,ns,0.975657955,Ogt,Ogt_Exon,X,101655367,101655416,101655415,101655416,50,+,TTTGGTTGGCAGAACTGAACATGGTGGTTTGCACTTGGGTTCTGGTGGCG,"Exon (Ogt-203/Ogt, exon 1 of 17)",20,101640060,101682940,42881,1,Ogt-202,15307,Ogt-202;Ogt-206;Ogt-201;Ogt-205;Ogt-204;Ogt-207;Ogt-203,Ogt;Ogt;Ogt;Ogt;Ogt;Ogt;Ogt,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,32,33,108155,ENSMUSG00000034160,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20867,cg19549894,0.0000372,0.00000437,8.511119875,7.51E-16,gain,yes,-0.0000161,0.00000742,-2.172671557,0.030562306,neg,ns,0.000678213,0.002174525,0.311890318,0.755333545,pos,ns,0.121861228,0.000119294,0.0000748,1.595231868,0.111679334,pos,ns,0.109869291,Pax6,Pax6_fiveUTR,2,105675393,105675442,105675393,105675394,50,-,CGCTGCTTTGCATAAAGCAATATTTTGTGTGAGAGCGAGCGGTGCATTTG,Promoter (<=1kb),2,105675433,105697344,21912,1,Pax6-205,0,Pax6-206;Pax6-207;Pax6-210;Pax6-214;Pax6-208;Pax6-217;Pax6-226;Pax6-220;Pax6-202;Pax6-205;Pax6-225;Pax6-204;Pax6-201;Pax6-203;Pax6-224;Pax6-219,Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,15,78,18508,ENSMUSG00000027168,conserved gene but different region,2,105675189,105675515,327,*,327,31,0.620795107,1.001679842,0.094801223,3.92E-23,CpGisland,TRUE,U3,Pr-B
11465,cg20900721,-0.00000307,0.000000979,-3.13288796,0.001896321,loss,ns,0.00000361,0.00000166,2.172401726,0.030582827,pos,ns,0.000632834,0.000487252,1.298783031,0.19498364,pos,ns,0.710001826,-0.0000169,0.0000168,-1.010730245,0.312933797,neg,ns,0.971153032,Hnrnpk,Hnrnpk_fiveUTR,13,58397888,58397937,58397936,58397937,50,+,ACATTTTTGGGCATAGCCAACCAGGGTTTTCACATGGGCGTTCAGGGGCG,5' UTR,13,58391142,58403343,12202,2,Hnrnpk-202,5406,Hnrnpk-202;Hnrnpk-224;Hnrnpk-221;Hnrnpk-232;Hnrnpk-216;Hnrnpk-201;Hnrnpk-205;Hnrnpk-217;Hnrnpk-206;Hnrnpk-209;Hnrnpk-213;Hnrnpk-227;Hnrnpk-234;Hnrnpk-233;Hnrnpk-228;Hnrnpk-214;Hnrnpk-215;Hnrnpk-211;Hnrnpk-208;Hnrnpk-212;Hnrnpk-231;Hnrnpk-230;Hnrnpk-203;Hnrnpk-218;Hnrnpk-226;Hnrnpk-207;Hnrnpk-219;Hnrnpk-225;Hnrnpk-229;Hnrnpk-223;Hnrnpk-220;Hnrnpk-210;Hnrnpk-204;Hnrnpk-222;Rmi1-205;Rmi1-201;Rmi1-204,Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Rmi1;Rmi1;Rmi1,0;0;0;0;0;0;0;-4020;-3103;-3913;-2690;-3804;-3999;-3718;-3192;0;-2168;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;4565;4118;-4311;-4326;-4763,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,10,19,15387,ENSMUSG00000021546,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17072,cg21294440,0.00000359,0.00000446,0.805604454,0.421088454,gain,ns,-0.0000164,0.00000757,-2.172209478,0.030597455,neg,ns,-0.000696658,0.002217419,-0.314175347,0.75359919,neg,ns,0.122859577,0.000138439,0.0000763,1.815433464,0.070423432,pos,ns,0.061021322,Gata2,Gata2_Intron,6,88197411,88197460,88197459,88197460,50,+,CTCCCTCCTCGGATTATTAAAAAGTTCATTTCCTGGCGAATCGGGTGACG,"Intron (Gata2-202/Gata2, intron 1 of 5)",6,88193891,88207032,13142,1,Gata2-202,3520,Gata2-202;Gata2-203;Gata2-201;Gata2-205,Gata2;Gata2;Gata2;Gata2,0;-874;0;-3459,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,12,14461,ENSMUSG00000015053,conserved gene and region,6,88197447,88197596,150,*,150,17,0.726666667,0.862068966,0.113333333,2.99E-14,CpGisland,TRUE,U3,Pr-B
25609,cg08156470,0.0000267,0.00000495,5.399902803,0.000000133,gain,yes,0.0000183,0.00000841,2.171812872,0.030627653,pos,ns,0.006781392,0.002464036,2.752148312,0.006269264,pos,ns,2.20278346,-0.0000121,0.0000847,-0.142480069,0.886793379,neg,ns,0.103449934,Ebf3,Ebf3_Intron,7,137312880,137312929,137312928,137312929,50,+,TCTTACTTTCTACTTCAAGCCCCACCGGTTAATCATGTGAAGTGCCATCG,"Intron (Ebf3-204/Ebf3, intron 3 of 15)",7,137193673,137314445,120773,2,Ebf3-204,1516,Ebf3-204;Ebf3-201;Ebf3-202;Ebf3-203;Ebf3-208;Ebf3-206,Ebf3;Ebf3;Ebf3;Ebf3;Ebf3;Ebf3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,62,84,13593,ENSMUSG00000010476,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
16177,cg03623417,-0.0000119,0.00000679,-1.74636784,0.081737554,loss,ns,0.0000251,0.0000115,2.171621605,0.030642225,pos,ns,0.002915171,0.003379554,0.862590377,0.38902953,pos,ns,0.410017432,-0.000155852,0.000116223,-1.340981572,0.18090815,neg,ns,0.594709355,Vsx2,Vsx2_Intergenic_upstream,12,84552312,84552361,84552360,84552361,50,-,GTAATAGAAATAAAACCCAGAATAACAAATTAAAAACCCTCATTTACACG,Distal Intergenic,12,84569762,84595457,25696,1,Vsx2-201,-17450,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,20,12677,ENSMUSG00000021239,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1311,cg13300506,0.0000474,0.00000823,5.753811032,0.000000021,gain,yes,-0.0000304,0.000014,-2.171536971,0.030648675,neg,ns,-0.011676011,0.004096441,-2.850281495,0.00466077,neg,ns,2.331542295,0.000670138,0.000140876,4.756927941,0.00000302,pos,ns,0.173555352,Fezf2,Fezf2_Intergenic_downstream,14,12341408,12341457,12341456,12341457,50,-,AGGGTCTCTGTTTTCTCTCTTAATTTGGGTCATTACTTAGAAAGCAAGCG,Distal Intergenic,14,12342094,12345844,3751,2,Fezf2-203,4436,Fezf2-203;Fezf2-201;Fezf2-202,Fezf2;Fezf2;Fezf2,0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,21,45,54713,ENSMUSG00000021743,mapped to different genes,14,12341456,12341600,145,*,145,14,0.634482759,0.970827355,0.096551724,8.85E-11,CpGisland,TRUE,U13,Hc-P
20555,cg19143676,0.000103662,0.000026,3.982931514,0.0000849,gain,ns,-0.000096,0.0000442,-2.171458079,0.030654688,neg,ns,-0.015032943,0.01295368,-1.160515261,0.24673201,neg,ns,0.607774503,0.000227846,0.000445476,0.511465439,0.609389291,pos,ns,0.584841878,Gm8730,Gm8730_Intergenic_upstream,8,103442858,103442907,103442906,103442907,50,+,GTCTCTCCAAACACTTAATCCAGCCGCTCTCATTGTCTGGGATCAAAGCG,Distal Intergenic,8,102864845,102865798,954,2,Gm8730-201,-577060,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,4,667618,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15244,cg27368532,-0.00000393,0.00000247,-1.592396044,0.112314867,loss,ns,-0.00000911,0.0000042,-2.171233953,0.030671777,neg,ns,-0.003231111,0.001229604,-2.627765546,0.009022417,neg,ns,2.044677093,0.0000507,0.0000423,1.19977558,0.231142647,pos,ns,0.958951748,Ap3s2,Ap3s2_threeUTR,7,79916052,79916101,79916052,79916053,50,+,CGCTTGAGGACTAGATGGAAAGTCTCTCGAACAATCTGCTGTTGAATTTC,3' UTR,7,79875325,79920649,45325,2,Ap3s2-201,4548,Ap3s2-201;Ap3s2-202,Ap3s2;Ap3s2,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,11778,ENSMUSG00000063801,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20877,cg20967583,0.000000913,0.00000131,0.699016491,0.485065834,gain,ns,0.00000482,0.00000222,2.171076007,0.030683825,pos,ns,0.001734052,0.000649744,2.668823928,0.008012401,pos,ns,2.09623735,-0.000021,0.0000223,-0.939152791,0.348383468,neg,ns,0.96598201,Ddx20,Ddx20_threeUTR,3,105680994,105681043,105681042,105681043,50,-,ATGAGGACTCTGCAATGAAAGTGCTTCAGTTTAGCCATAGCATCAAGACG,3' UTR,3,105678270,105687574,9305,2,Ddx20-201,6531,Ddx20-201;Ddx20-203;Ddx20-202,Ddx20;Ddx20;Ddx20,0;0;6401,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,53975,ENSMUSG00000027905,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26392,cg14973588,0.0000859,0.00000655,13.11528409,1.46E-31,gain,yes,-0.0000242,0.0000111,-2.170841024,0.030701757,neg,ns,0.00029432,0.003259315,0.090301122,0.928106245,pos,ns,0.032402305,0.000157201,0.000112088,1.402485491,0.161770945,pos,ns,0.202880812,Gsx1,Gsx1_Promoter,5,147188489,147188538,147188489,147188490,50,+,CGTGGGTGGGGTTGACAAGAATAGAGTACATTATGCAGTTCATTTAGTTA,Promoter (<=1kb),5,147188696,147190947,2252,1,Gsx1-201,-158,Gsx1-201,Gsx1,-158,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,6,20,14842,ENSMUSG00000053129,conserved gene and region,5,147188425,147188490,66,*,66,7,0.590909091,1.5,0.106060606,0.00000889,CpGisland,TRUE,U13,Hc-P
24949,cg01359371,-0.00000673,0.00000324,-2.076550241,0.038666666,loss,ns,-0.000012,0.00000551,-2.17080265,0.030704686,neg,ns,-0.001008914,0.001612969,-0.625500879,0.532102572,neg,ns,0.274004642,-0.000129943,0.0000555,-2.34259184,0.019782626,neg,ns,0.879410811,Kctd7,Kctd7_Exon,5,130151755,130151804,130151803,130151804,50,-,CATCGGGCCCCTCCTGGAGCAGCTGGAGAACATGCAGCCACTGAAGGGCG,"Exon (Kctd7-201/Kctd7, exon 3 of 4)",5,130144861,130155806,10946,1,Kctd7-201,6894,Kctd7-201;Kctd7-203;Kctd7-202,Kctd7;Kctd7;Kctd7,0;6831;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,Exon,2,2,212919,ENSMUSG00000034110,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16294,cg18265711,-0.00000112,0.0000009,-1.246785551,0.21341735,loss,ns,-0.00000332,0.00000153,-2.170651511,0.030716225,neg,ns,-0.0000872,0.00044784,-0.194706744,0.845750072,neg,ns,0.072757956,0.000022,0.0000154,1.430694976,0.15352487,pos,ns,0.977767391,Lrpprc,Lrpprc_Intron,17,84716764,84716813,84716764,84716765,50,+,CGATAATAAATGGTTGAGCACCAAGGTGAAATTATAAAAACTACTGTTCG,"Intron (Lrpprc-201/Lrpprc, intron 30 of 37)",17,84705247,84790558,85312,2,Lrpprc-201,73745,Lrpprc-201;Lrpprc-207,Lrpprc;Lrpprc,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,15,72416,ENSMUSG00000024120,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18576,cg26126145,0.0000803,0.00000991,8.103842547,1.24E-14,gain,yes,-0.0000365,0.0000168,-2.170556993,0.030723443,neg,ns,-0.000165104,0.004932062,-0.033475641,0.973316834,neg,ns,0.011745765,0.0000235,0.000169613,0.138711616,0.889768103,pos,ns,0.067871495,Hoxb6,Hoxb6_fiveUTR,11,96299091,96299140,96299139,96299140,50,+,ACTAATAGGCGCGGCGCTCGGACTATAAAACACAACAAATCATAAACCCG,5' UTR,11,96292476,96301569,9094,1,Hoxb6-202,6615,Hoxb5-202;Hoxb5-201;Hoxb6-202;Hoxb6-201,Hoxb5;Hoxb5;Hoxb6;Hoxb6,0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,6,16,15414,ENSMUSG00000000690,conserved gene and region,11,96299051,96299649,599,*,599,62,0.65442404,0.973218029,0.103505843,3.02E-48,CpGisland,TRUE,U3,Pr-B
7425,cg11039901,-0.0000113,0.00000369,-3.064706465,0.002370341,loss,ns,0.0000136,0.00000627,2.170420097,0.030733901,pos,ns,0.00083537,0.001837834,0.454540543,0.649757932,pos,ns,0.18724841,-0.0000977,0.0000632,-1.545134738,0.123333881,neg,ns,0.936035435,Gabrb2,Gabrb2_Exon,11,42602196,42602245,42602196,42602197,50,+,CGGACTACCAATTACGATTTCTCTCTGTATACGGTTAGATAGCCAGTTTT,"Exon (Gabrb2-205/Gabrb2, exon 9 of 10)",11,42419757,42629028,209272,1,Gabrb2-201,182439,Gabrb2-201;Gabrb2-205,Gabrb2;Gabrb2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,5,14401,ENSMUSG00000007653,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18561,cg08665877,0.00003,0.00000785,3.818342977,0.000162253,gain,ns,-0.000029,0.0000133,-2.170166486,0.030753282,neg,ns,0.004697403,0.003908165,1.201945823,0.23030188,pos,ns,0.637702518,-0.0000946,0.000134401,-0.703932934,0.482002954,neg,ns,0.13826639,Arid2,Arid2_Exon,15,96289120,96289169,96289120,96289121,50,-,CGCTGCCTTTGCTTTAAAACAGTATTACTTGCGGTGAGTAGTAGTGACTT,"Exon (Arid2-202/Arid2, exon 3 of 5)",15,96287518,96352038,64521,1,Arid2-202,1602,Arid2-202;Arid2-201,Arid2;Arid2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,9,77044,ENSMUSG00000033237,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11343,cg01418317,0.000116617,0.0000102,11.44807579,1.52E-25,gain,yes,-0.0000376,0.0000173,-2.170061306,0.030761323,neg,ns,0.004116629,0.005069991,0.811959917,0.417437667,pos,ns,0.379408365,0.000187777,0.000174357,1.07697178,0.282330251,pos,ns,0.148339791,Pcdh7,Pcdh7_fiveUTR,5,57718844,57718893,57718844,57718845,50,-,CGGGCGATTAGCACCCATTGCATGAATTATGAAACAATAACTTTCGGAAG,Promoter (<=1kb),5,57717967,58133230,415264,1,Pcdh7-203,877,Pcdh7-203;Pcdh7-201;Pcdh7-202;Pcdh7-205;Pcdh7-206;Pcdh7-207;Pcdh7-204,Pcdh7;Pcdh7;Pcdh7;Pcdh7;Pcdh7;Pcdh7;Pcdh7,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,13,54216,ENSMUSG00000029108,conserved gene and region,5,57718758,57718889,132,*,132,13,0.575757576,1.230107527,0.098484849,3.82E-10,CpGisland,TRUE,U3,Pr-B
6539,cg00614923,-0.00000345,0.00000226,-1.521666979,0.129111893,loss,ns,0.00000835,0.00000385,2.169976471,0.030767809,pos,ns,0.002361013,0.001126803,2.095318965,0.03695368,pos,ns,1.43234231,-0.0000734,0.0000388,-1.894116691,0.059140219,neg,ns,0.951764782,Zfp536,Zfp536_Intron,7,37650742,37650791,37650742,37650743,50,-,CGCATGTAATTGACCTATATGTGAATTGCATCAGAACCCTTAACTCTATT,"Intron (Zfp536-202/Zfp536, intron 3 of 6)",7,37479104,37769624,290521,2,Zfp536-202,118833,Zfp536-202;Zfp536-201;Zfp536-203;Zfp536-206;Zfp536-209;Zfp536-208,Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,73,112,243937,ENSMUSG00000043456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9335,cg06771025,0.00000415,0.0000024,1.727765444,0.085026191,gain,ns,-0.00000886,0.00000408,-2.169962052,0.030768912,neg,ns,-0.001396102,0.00119649,-1.166831367,0.24417527,neg,ns,0.612298323,0.0000406,0.0000411,0.987333196,0.324249308,pos,ns,0.942515495,Slit2,Slit2_Exon,5,48224016,48224065,48224016,48224017,50,-,CGTCAAGCACCATGGAACGTCACGCAGCTTTCTACAGCATGACAAGCTGC,"Exon (Mir218-1-201/Mir218-1-201, exon 1 of 1)",5,47983138,48307733,324596,1,Slit2-208,240878,Slit2-208;Slit2-201;Slit2-202;Slit2-216;Slit2-217;Slit2-209;Slit2-218;Slit2-206,Slit2;Slit2;Slit2;Slit2;Slit2;Slit2;Slit2;Slit2,0;0;0;0;0;41914;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,11,20563,ENSMUSG00000031558,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4937,cg17682306,0.000149289,0.0000182,8.202539065,6.34E-15,gain,yes,-0.0000671,0.0000309,-2.169868706,0.030776051,neg,ns,0.039022273,0.009058493,4.307810849,0.0000222,pos,ns,4.654450491,-0.000889705,0.000311521,-2.856005456,0.004579711,neg,ns,0.722355749,Ass1,Ass1_Intron,2,31495331,31495380,31495331,31495332,50,+,CGAAGAAAGATAGAAATTTACTTGCTTTAACTTCATACGGTCCACAGTGA,"Intron (Ass1-201/Ass1, intron 9 of 15)",2,31470207,31520672,50466,1,Ass1-201,25124,Ass1-201;Ass1-202,Ass1;Ass1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,9,11898,ENSMUSG00000076441,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27830,cg18734884,-0.0000078,0.00000219,-3.555300447,0.000436437,loss,ns,-0.00000809,0.00000373,-2.169625392,0.030794667,neg,ns,-0.001933076,0.001092326,-1.769688332,0.077762085,neg,ns,1.109232103,0.0000211,0.0000376,0.562427798,0.574231054,pos,ns,0.962859355,Esrrg,Esrrg_Intron,1,188167341,188167390,188167389,188167390,50,+,TTTTAAGGAATAGTAATCTCCGTCTAATAAGATGCAAATGTGTCACATCG,"Intron (Esrrg-203/Esrrg, intron 6 of 7)",1,187609029,188214386,605358,1,Esrrg-203,558312,Esrrg-203;Esrrg-201;Esrrg-202,Esrrg;Esrrg;Esrrg,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,60,26381,ENSMUSG00000026610,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23985,cg06299803,-0.00000655,0.00000519,-1.262742848,0.20763062,loss,ns,0.0000191,0.00000882,2.169037011,0.030839724,pos,ns,0.006866338,0.002582949,2.658333139,0.008260301,pos,ns,2.083004146,-0.000220905,0.0000888,-2.486904403,0.013411869,neg,ns,0.905632419,Nktr,Nktr_threeUTR,9,121731483,121731532,121731531,121731532,50,-,AACTTTATTCTCAAACATGACAGAGCGTTCCTTTTATCAATGGCAAATCG,3' UTR,9,121719169,121742718,23550,1,Nktr-214,12314,Nktr-214;Nktr-201;Nktr-212;Nktr-213;Nktr-206;Nktr-216;Nktr-204;Nktr-205;Nktr-207;Nktr-208;Nktr-203,Nktr;Nktr;Nktr;Nktr;Nktr;Nktr;Nktr;Nktr;Nktr;Nktr;Nktr,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,3,18087,ENSMUSG00000032525,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26579,cg10202353,0.0000201,0.0000108,1.856337998,0.064354048,gain,ns,0.0000398,0.0000184,2.168921343,0.030848588,pos,ns,0.010156029,0.005379618,1.887871814,0.059976941,pos,ns,1.222015686,-0.00010952,0.000185005,-0.591982807,0.554293589,neg,ns,0.756526623,Casz1,Casz1_Intron,4,148925142,148925191,148925190,148925191,50,+,TATCAGTAAATTATTTATTGTAGCAATCTGCTGCACCATTTTACCCATCG,"Intron (Casz1-201/Casz1, intron 4 of 15)",4,148804429,148945129,140701,1,Casz1-201,120713,Casz1-201;Casz1-202;Casz1-206,Casz1;Casz1;Casz1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,94,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15141,cg13311046,-0.00000162,0.00000513,-0.316263441,0.752015401,loss,ns,0.0000189,0.00000871,2.168913038,0.030849225,pos,ns,0.00402812,0.002553147,1.577707889,0.115652592,pos,ns,0.936844629,-0.0000238,0.0000878,-0.270709415,0.786794686,neg,ns,0.923424844,Tmem184b,Tmem184b_Exon,15,79362834,79362883,79362882,79362883,50,+,TTCATGGTCTCCTTGAGGCTGCTGGAGATGCTCTTCATGGGGGCACAGCG,"Exon (Tmem184b-201/Tmem184b, exon 9 of 9)",15,79360684,79403569,42886,2,Tmem184b-201,40686,Maff-203;Maff-201;Maff-202;Tmem184b-201;Tmem184b-202;Tmem184b-204;Tmem184b-208,Maff;Maff;Maff;Tmem184b;Tmem184b;Tmem184b;Tmem184b,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,223693,ENSMUSG00000009035,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14441,cg19348511,0.00000361,0.00000174,2.071482661,0.039140638,gain,ns,-0.00000641,0.00000296,-2.168681348,0.030866988,neg,ns,-0.001976363,0.000866327,-2.281312642,0.023207884,neg,ns,1.63436446,0.00000777,0.0000298,0.260960351,0.794296357,pos,ns,0.967933245,Crk,Crk_Exon,11,75692630,75692679,75692630,75692631,50,+,CGTCAACACTCCGCTCCCTAACCTCCAGAATGGGCCCATATATGCCAGGG,"Exon (Crk-201/Crk, exon 2 of 3)",11,75679259,75706065,26807,1,Crk-201,13371,Crk-201;Crk-204;Crk-203;Crk-202;Crk-205,Crk;Crk;Crk;Crk;Crk,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,7,12928,ENSMUSG00000017776,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
444,cg24291359,-0.0000142,0.0000101,-1.402966905,0.161627457,loss,ns,0.0000373,0.0000172,2.168180297,0.030905431,pos,ns,-0.001072396,0.00504331,-0.212637367,0.831749577,neg,ns,0.080007411,0.0000497,0.000173439,0.286312854,0.774829758,pos,ns,0.858970686,Gm17934,Gm17934_Intergenic_downstream,3,5957093,5957142,5957093,5957094,50,+,CGCATTGGGATAGAACTATACAGTAAATAATGAATTGTGGGATGCAGCCA,Distal Intergenic,3,6137823,6138244,422,2,Gm17934-201,181102,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,6,100416136,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7,cg12807727,-0.0000127,0.00000421,-3.006235208,0.002861251,loss,ns,0.0000155,0.00000716,2.168072537,0.030913704,pos,ns,-0.000509416,0.002097748,-0.242839362,0.808290437,neg,ns,0.092432559,-0.0000271,0.0000721,-0.375079463,0.707857854,neg,ns,0.547921924,Gm18985,Gm18985_Intergenic_upstream,5,3199100,3199149,3199100,3199101,50,-,CGCATTATTTCTACAGTTTGTGGAAAACATTAGGCAGCTGTAATAAAGTC,Distal Intergenic,5,3212335,3213694,1360,1,Gm18985-201,-13235,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,100418077,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2750,cg26073614,-0.000000741,0.00000478,-0.154999772,0.876922367,loss,ns,-0.0000176,0.00000812,-2.167864634,0.030929672,neg,ns,-0.0056981,0.002377957,-2.396216182,0.017157714,neg,ns,1.765540586,0.000128416,0.0000818,1.570310566,0.117362971,pos,ns,0.814862792,Smarca4,Smarca4_Exon,9,21677921,21677970,21677969,21677970,50,+,CCTGGAGACTGAAGTCCTCTATTTATCCACAGAGCAGACACTGCAGCACG,"Exon (Smarca4-203/Smarca4, exon 24 of 27)",9,21616169,21704217,88049,1,Smarca4-201,61752,Smarca4-201;Smarca4-202;Smarca4-204;Smarca4-203,Smarca4;Smarca4;Smarca4;Smarca4,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,6,20586,ENSMUSG00000032187,conserved gene but different region,9,21677969,21678028,60,*,60,7,0.766666667,0.833333333,0.116666667,0.00000466,CpGisland,TRUE,U10,Tr-S
5003,cg04024969,0.000000514,0.00000168,0.304886761,0.76065699,gain,ns,-0.0000062,0.00000286,-2.166978118,0.030997837,neg,ns,-0.000147389,0.000838277,-0.175824055,0.860546967,neg,ns,0.065225422,-0.0000465,0.0000288,-1.61182492,0.108017643,neg,ns,0.953271144,Ammecr1l,Ammecr1l_Exon,18,31774738,31774787,31774786,31774787,50,+,ACCTGGACTGGGAGGTGAGAACAGCCGCATTTGGAACTCTGCATCTCTCG,"Exon (Ammecr1l-205/Ammecr1l, exon 5 of 6)",18,31759826,31777524,17699,1,Ammecr1l-205,14912,Ammecr1l-205;Ammecr1l-201;Ammecr1l-204;Ammecr1l-203;Ammecr1l-202,Ammecr1l;Ammecr1l;Ammecr1l;Ammecr1l;Ammecr1l,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,4,225339,ENSMUSG00000041915,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
582,cg00470955,0.0000312,0.0000058,5.369825884,0.000000155,gain,yes,-0.0000214,0.00000986,-2.166898811,0.031003942,neg,ns,0.001608361,0.002888711,0.556774519,0.578083216,pos,ns,0.23800964,-0.000153898,0.0000993,-1.549169486,0.122361242,neg,ns,0.051336632,Rbfox1,Rbfox1_Intron,16,7039971,7040020,7039971,7039972,50,+,CGTGGGCATGTGTCCCCAGCTTTCGTGTGCCTTGACTTTTATGTACTTAC,"Intron (Rbfox1-205/Rbfox1, intron 4 of 11)",16,5885355,7353045,1467691,1,Rbfox1-205,1154616,Rbfox1-205;Rbfox1-201;Rbfox1-202,Rbfox1;Rbfox1;Rbfox1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,35,268859,ENSMUSG00000008658,conserved gene and region,16,7039866,7039972,107,*,107,12,0.635514019,1.114583333,0.112149533,4.48E-10,CpGisland,TRUE,NA,NRS
23676,cg20838828,-0.00000731,0.00000536,-1.364054133,0.173540058,loss,ns,0.0000197,0.00000911,2.166301436,0.031049956,pos,ns,0.005965581,0.002668285,2.235736319,0.026080626,pos,ns,1.583681981,-0.000222353,0.0000918,-2.423145474,0.015959233,neg,ns,0.89678283,Ptbp2,Ptbp2_Intron,3,119725605,119725654,119725605,119725606,50,+,CGTCAAGATCTTTGGAAGAACCTTCAAAGAAAAATGTATTAGAGTAGTTC,"Intron (Ptbp2-201/Ptbp2, intron 9 of 13)",3,119718742,119783388,64647,2,Ptbp2-201,57734,Ptbp2-201;Ptbp2-213;Ptbp2-208;Ptbp2-206;Ptbp2-204;Ptbp2-211;Ptbp2-202,Ptbp2;Ptbp2;Ptbp2;Ptbp2;Ptbp2;Ptbp2;Ptbp2,0;0;0;0;0;-1218;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,13,56195,ENSMUSG00000028134,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9029,cg10035738,-0.00000944,0.00000657,-1.43655228,0.151853669,loss,ns,0.0000242,0.0000112,2.166253592,0.031053644,pos,ns,0.013947444,0.003271379,4.263474837,0.0000267,pos,ns,4.572695629,-0.000422852,0.000112502,-3.758601163,0.000204153,neg,ns,0.859577991,Gm8863,Gm8863_Intergenic_downstream,9,46653100,46653149,46653148,46653149,50,+,CTCTTATTTTAATAATATAAAATAACTGTCCCACTGAATCAGAGTGAGCG,Distal Intergenic,9,46713233,46714158,926,2,Gm8863-201,61009,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,20,667890,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27258,cg19766374,0.000002,0.00000406,0.492788434,0.62251094,gain,ns,0.0000149,0.0000069,2.165932519,0.031078402,pos,ns,0.004567851,0.002020477,2.260778993,0.024466083,pos,ns,1.611435558,0.0000118,0.0000695,0.169266365,0.865697528,pos,ns,0.917887284,Dnm3,Dnm3_Exon,1,162273615,162273664,162273615,162273616,50,+,CGTACAATTTGCCTTGAAGGCGGAAGATTGGTTCCCTGAAATAGCAAAGA,"Exon (Dnm3-209/Dnm3, exon 4 of 5)",1,161982453,162295636,313184,2,Dnm3-203,21972,Dnm3-203;Dnm3-202;Dnm3-201;Dnm3-205;Dnm3-209,Dnm3;Dnm3;Dnm3;Dnm3;Dnm3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,6,103967,ENSMUSG00000040265,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12560,cg25067005,-0.000000553,0.00000208,-0.266125158,0.790319732,loss,ns,0.00000764,0.00000353,2.165405719,0.031119061,pos,ns,0.002428235,0.001033334,2.349903849,0.019405116,pos,ns,1.712083757,-0.0000958,0.0000355,-2.695855437,0.007404196,neg,ns,0.95117518,Pikfyve,Pikfyve_threeUTR,1,65224229,65224278,65224229,65224230,50,+,CGCTTCTATCAGCCTGAACGTGGAGCTGGACAACGTGAACTTCCATATCA,3' UTR,1,65186689,65246898,60210,1,Pikfyve-209,37540,Pikfyve-209;Pikfyve-207;Pikfyve-201;Pikfyve-205;Pikfyve-202,Pikfyve;Pikfyve;Pikfyve;Pikfyve;Pikfyve,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,4,18711,ENSMUSG00000025949,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19373,cg09412713,-0.0000016,0.0000018,-0.887968943,0.375245893,loss,ns,0.00000663,0.00000306,2.165111186,0.031141813,pos,ns,0.001823443,0.000897043,2.032726992,0.042932043,pos,ns,1.367218446,-0.0000561,0.0000308,-1.818382477,0.069970618,neg,ns,0.951663892,Foxp1,Foxp1_Intron,6,99137370,99137419,99137418,99137419,50,+,ACCCACTGGTATCATAATTTAAATACCATGAAAATAAACTGTGAAAGTCG,"Intron (Foxp1-206/Foxp1, intron 3 of 17)",6,98925338,99266515,341178,2,Foxp1-206,129096,Foxp1-206;Foxp1-204;Foxp1-220;Foxp1-201;Foxp1-205;Foxp1-207;Foxp1-208;Foxp1-226;Foxp1-228;Foxp1-221;Foxp1-222;Foxp1-223,Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,87,108655,ENSMUSG00000030067,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27362,cg20433492,-0.0000343,0.0000105,-3.272826071,0.001185012,loss,ns,0.0000385,0.0000178,2.164741155,0.031170418,pos,ns,0.004339432,0.005216714,0.831832337,0.406143886,pos,ns,0.39132008,-0.000337705,0.000179402,-1.882391005,0.060719396,neg,ns,0.830322618,Glra2,Glra2_Intron,X,165289411,165289460,165289411,165289412,50,+,CGATGGCTTCAATGCTCAGTCCCACTCACCATTGTAGTTTCTGCTATTGA,"Intron (Glra2-201/Glra2, intron 3 of 8)",20,165129017,165327393,198377,2,Glra2-201,37933,Glra2-201,Glra2,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,5,237213,ENSMUSG00000018589,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27060,cg11399589,0.0000424,0.000011,3.849897677,0.000143545,gain,ns,-0.0000405,0.0000187,-2.164358793,0.0312,neg,ns,0.031863368,0.005476141,5.818580641,1.48E-08,pos,ns,7.829936263,-0.001556527,0.000188324,-8.265152821,4.13E-15,neg,yes,0.676752576,Blcap,Blcap_fiveUTR,2,157558126,157558175,157558126,157558127,50,+,CGGGCAGCAGCCACTGGAGGCAATACATGATCTCTGCCGGGCAGGGCCTT,5' UTR,2,157556362,157566337,9976,2,Blcap-202,8162,Blcap-202;Blcap-201;Blcap-205;Blcap-204;Nnat-205;Nnat-208;Nnat-202;Nnat-210;Nnat-207;Nnat-209;Nnat-206;Nnat-201;Nnat-204;Nnat-203,Blcap;Blcap;Blcap;Blcap;Nnat;Nnat;Nnat;Nnat;Nnat;Nnat;Nnat;Nnat;Nnat;Nnat,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,9,53619,ENSMUSG00000067787,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19514,cg00252404,-0.00000609,0.00000136,-4.472883105,0.0000108,loss,ns,0.00000501,0.00000231,2.163913014,0.031234518,pos,ns,0.001376153,0.000677937,2.029913691,0.043219015,pos,ns,1.364325137,-0.0000399,0.0000233,-1.710007707,0.088265033,neg,ns,0.967726679,Foxp1,Foxp1_Intron,6,99505418,99505467,99505418,99505419,50,+,CGACACCTGCCTTCTGGCCTAATGGAAAAATCAATCTGTCAGGTCTTAAT,"Intron (Foxp1-220/Foxp1, intron 1 of 19)",6,98929189,99520997,591809,2,Foxp1-220,15530,Foxp1-220;Foxp1-224;Foxp1-227;Foxp1-216;Gm20696-201;Gm20696-203,Foxp1;Foxp1;Foxp1;Foxp1;Gm20696;Gm20696,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,87,108655,ENSMUSG00000030067,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27372,cg11702192,0.0000279,0.00000408,6.825312136,4.62E-11,gain,yes,-0.000015,0.00000694,-2.163829401,0.031240996,neg,ns,0.000282292,0.002031955,0.138926437,0.889598486,pos,ns,0.050805965,-0.0000765,0.0000699,-1.094986211,0.274372687,neg,ns,0.827620067,Zmynd8,Zmynd8_Exon,2,165846079,165846128,165846127,165846128,50,+,GCGTGATAAACCCGGGGACAGAGCTCACAGCAAAGGACTTGGCCTTCCCG,"Exon (Zmynd8-205/Zmynd8, exon 3 of 22)",2,165784152,165858173,74022,2,Zmynd8-205,12045,Zmynd8-205;Zmynd8-221;Zmynd8-203;Zmynd8-220;Zmynd8-201;Zmynd8-206;Zmynd8-218;Zmynd8-202;Zmynd8-219;Zmynd8-204;Zmynd8-215;Zmynd8-209;Zmynd8-211;Zmynd8-210,Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,12,228880,ENSMUSG00000039671,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3101,cg11187272,-0.00000768,0.00000316,-2.433547918,0.015516461,loss,ns,0.0000116,0.00000536,2.163166324,0.031292412,pos,ns,0.003054981,0.00157066,1.945030357,0.052675275,pos,ns,1.278393188,-0.000115137,0.000054,-2.131584313,0.033827235,neg,ns,0.937190255,Trpm3,Trpm3_Exon,19,22749752,22749801,22749800,22749801,50,-,AGATTTTATTTTTTGACAGGATGCCTGCCGTTTTTCTCTCTTGACTCCCG,"Exon (Trpm3-204/Trpm3, exon 7 of 21)",19,22139046,22995410,856365,1,Trpm3-218,610706,Trpm3-218;Trpm3-202;Trpm3-203;Trpm3-213;Trpm3-222;Trpm3-207;Trpm3-209;Trpm3-214;Trpm3-216;Trpm3-223;Trpm3-224;Trpm3-201;Trpm3-219;Trpm3-204;Trpm3-206;Trpm3-205;Trpm3-208;Trpm3-211,Trpm3;Trpm3;Trpm3;Trpm3;Trpm3;Trpm3;Trpm3;Trpm3;Trpm3;Trpm3;Trpm3;Trpm3;Trpm3;Trpm3;Trpm3;Trpm3;Trpm3;Trpm3,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,12,226025,ENSMUSG00000052387,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19477,cg12719939,-0.00000616,0.0000025,-2.461293423,0.014388179,loss,ns,0.0000092,0.00000425,2.163073688,0.0312996,pos,ns,0.000906485,0.001246437,0.72726132,0.467614754,pos,ns,0.330111795,0.0000062,0.0000429,0.144695906,0.885044998,pos,ns,0.044780819,Foxn3,Foxn3_Intron,12,99392214,99392263,99392262,99392263,50,-,GCTCGCATACCTTCACTGCCGGTCAGATGTCATAAACCTTTTATTGGCCG,"Intron (Foxn3-201/Foxn3, intron 1 of 5)",12,99190078,99393797,203720,2,Foxn3-201,1534,Foxn3-201;Foxn3-209;Foxn3-202;Foxn3-207;Foxn3-208;Foxn3-205;Foxn3-214,Foxn3;Foxn3;Foxn3;Foxn3;Foxn3;Foxn3;Foxn3,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,17,71375,ENSMUSG00000033713,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
8360,cg06407466,-0.0000235,0.00000551,-4.270963415,0.0000259,loss,ns,0.0000202,0.00000936,2.162876694,0.031314892,pos,ns,0.004494913,0.002740934,1.639920334,0.102036034,pos,ns,0.991246428,-0.000188867,0.0000943,-2.003667612,0.045975598,neg,ns,0.872599729,Zeb2,Zeb2_Intron,2,45047708,45047757,45047708,45047709,50,+,CGCTTCAATCCGCAGGTCTGTCAGATTGCTAGAAATTACATTCTGCTCTG,"Intron (Zeb2-212/Zeb2, intron 3 of 10)",2,44983632,45117395,133764,2,Zeb2-212,69638,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-218;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14592,cg09367875,-0.0000142,0.00000646,-2.20425865,0.028240698,loss,ns,-0.0000237,0.000011,-2.162824615,0.031318936,neg,ns,-0.001262162,0.003213227,-0.392802083,0.694735629,neg,ns,0.158180428,-0.000213619,0.000110503,-1.933155118,0.054127527,neg,ns,0.913106647,1700063K16Rik,1700063K16Rik_Exon,16,76741414,76741463,76741414,76741415,50,+,CGTCAAGCAGTGTTTATAAATTAGAAATTACCAGCCATTTGGTTCTTTGC,"Exon (Gm45029-201/Gm45029-201, exon 2 of 2)",16,76821373,76821741,369,2,1700063K16Rik-201,80278,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,76610,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10785,cg15918382,0.000000532,0.0000027,0.197100341,0.843878181,gain,ns,0.00000991,0.00000458,2.16280043,0.031320814,pos,ns,0.004910631,0.001342199,3.658646933,0.000297874,pos,ns,3.525967464,-0.000139949,0.0000462,-3.031958659,0.0026348,neg,ns,0.941793101,Vti1a,Vti1a_Intron,19,55411434,55411483,55411434,55411435,50,-,CGCTGAGAGGAAAATGACACCGATCCTATCGGAAAACAGAAACGATGTCA,"Intron (Vti1a-206/Vti1a, intron 5 of 7)",19,55316295,55577001,260707,1,Vti1a-206,95139,Vti1a-206;Vti1a-202;Vti1a-201;Vti1a-203,Vti1a;Vti1a;Vti1a;Vti1a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,32,53611,ENSMUSG00000024983,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11974,cg12351588,-0.00000339,0.0000064,-0.528892347,0.597258607,loss,ns,-0.0000235,0.0000109,-2.162783289,0.031322145,neg,ns,0.013718009,0.003187266,4.304004551,0.0000225,pos,ns,4.647405162,-0.000362121,0.00010961,-3.303725004,0.001065803,neg,ns,0.721683186,Ablim3,Ablim3_Exon,18,61821959,61822008,61821959,61821960,50,+,CGTAGATAGACTTAACCTTGGGGAGAGCCGCCAGGTCTTTGTAATTAAGG,"Exon (Ablim3-202/Ablim3, exon 11 of 24)",18,61799392,61911823,112432,2,Ablim3-202,89815,Ablim3-202;Ablim3-201,Ablim3;Ablim3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,319713,ENSMUSG00000032735,conserved gene and region,18,61821865,61821960,96,*,96,9,0.572916667,1.142857143,0.09375,0.000000648,CpGisland,TRUE,U11,Tr-P
9698,cg26044837,0.0000139,0.00000267,5.219656748,0.000000329,gain,yes,-0.00000979,0.00000453,-2.162599794,0.031336398,neg,ns,0.004837664,0.00132688,3.645893471,0.0003124,pos,ns,3.50528905,-0.000117534,0.0000456,-2.575739734,0.010465579,neg,ns,0.078671948,Gm7481,Gm7481_Exon,12,50120443,50120492,50120443,50120444,50,+,CGCCCTGCATGTGTCTGGGCTCCCCTGGCCAGTCCGTTTTTTTGTCTCTG,"Exon (Gm40418-201/Gm40418-201, exon 1 of 3)",12,49840757,49841751,995,2,Gm7481-201,-278692,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,37,665077,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27732,cg21731503,-0.000000682,0.00000467,-0.146138013,0.883907421,loss,ns,-0.0000171,0.00000793,-2.162570403,0.031338682,neg,ns,-0.00542639,0.002322754,-2.336187645,0.020118545,neg,ns,1.696403429,0.000133636,0.0000799,1.672971622,0.095341678,pos,ns,0.893524846,Cdc42bpa,Cdc42bpa_Exon,1,180094097,180094146,180094097,180094098,50,+,CGAGATAAGGAAGAAGAGGTGGACCTGGTGATGCAAAAAGTTGAAAGCTT,"Exon (Cdc42bpa-203/Cdc42bpa, exon 13 of 35)",1,179960472,180163156,202685,1,Cdc42bpa-203,133625,Cdc42bpa-203;Cdc42bpa-204;Cdc42bpa-208;Cdc42bpa-201;Cdc42bpa-202;Cdc42bpa-218;Cdc42bpa-210,Cdc42bpa;Cdc42bpa;Cdc42bpa;Cdc42bpa;Cdc42bpa;Cdc42bpa;Cdc42bpa,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,10,226751,ENSMUSG00000026490,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26404,cg07555368,0.00000272,0.00000241,1.12820941,0.260103879,gain,ns,0.00000885,0.00000409,2.162460142,0.031347249,pos,ns,0.003218466,0.00119873,2.684895621,0.00764559,pos,ns,2.116589019,-0.0000887,0.0000412,-2.152518903,0.032128059,neg,ns,0.032703311,Gsx1,Gsx1_Intergenic_downstream,5,147223681,147223730,147223729,147223730,50,-,TTCTTTAGAAATCAAGCAATTCTGCATGACAAAGAACAATTAATAAGCCG,Distal Intergenic,5,147188696,147190947,2252,1,Gsx1-201,35034,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,12,20,14842,ENSMUSG00000053129,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
18973,cg10089091,0.0000002,0.00000246,0.081458131,0.935130187,gain,ns,-0.00000904,0.00000418,-2.162427367,0.031349796,neg,ns,0.0000269,0.001224445,0.021965851,0.982489328,pos,ns,0.007672158,-0.000017,0.0000421,-0.403956002,0.686523599,neg,ns,0.91222501,Fbxl20,Fbxl20_Exon,11,98089662,98089711,98089662,98089663,50,-,CGAAGTAGGCGTGGACTTTAATATTGGGTAAATGGGTCTGAAACAAGACA,"Exon (Fbxl20-201/Fbxl20, exon 15 of 15)",11,98082556,98149612,67057,2,Fbxl20-201,59901,Fbxl20-201;Fbxl20-202,Fbxl20;Fbxl20,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,72194,ENSMUSG00000020883,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9882,cg08979452,-0.00000824,0.000005,-1.6468095,0.100610506,loss,ns,-0.0000184,0.0000085,-2.16224339,0.031364097,neg,ns,-0.006722798,0.002490979,-2.698857703,0.00733928,neg,ns,2.13434652,-0.0000079,0.0000857,-0.092215031,0.926586758,neg,ns,0.871479376,Gm49908,Gm49908_Intergenic_upstream,17,51358145,51358194,51358193,51358194,50,+,CCACCAGTCCTTCCCATTCCAAACCAATCCTGTCCTAAGGGTGAATTGCG,Distal Intergenic,17,51236771,51237062,292,2,Gm49908-201,-121083,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,9,9,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6467,cg05546590,-0.0000074,0.00000777,-0.951329114,0.342178451,loss,ns,0.0000286,0.0000132,2.162226962,0.031365375,pos,ns,0.012169021,0.003869278,3.145036307,0.001821665,pos,ns,2.739531552,-0.000411719,0.000133064,-3.094136321,0.002153742,neg,ns,0.871405413,Rc3h2,Rc3h2_threeUTR,2,37373691,37373740,37373691,37373692,50,-,CGACCAATAACATGATCCTGTTTAAGCATCTTGCTAGCAGGAAAAGCCCT,3' UTR,2,37370069,37422903,52835,2,Rc3h2-202,49163,Rc3h2-202;Rc3h2-201;Rc3h2-203;Rc3h2-205;Rc3h2-208;Rc3h2-206,Rc3h2;Rc3h2;Rc3h2;Rc3h2;Rc3h2;Rc3h2,0;0;0;0;3831;7520,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,7,10,319817,ENSMUSG00000075376,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15000,cg19555331,0.0000225,0.0000129,1.737508012,0.083290679,gain,ns,-0.0000475,0.000022,-2.162179477,0.031369067,neg,ns,-0.007657324,0.006431276,-1.190638251,0.234706541,neg,ns,0.629474806,0.0000669,0.000221171,0.30225525,0.76266018,pos,ns,0.288959338,Pou4f2,Pou4f2_Exon,8,78434748,78434797,78434796,78434797,50,-,CGGAATATTTCATTCTTTTCTGTTTCTGCCTCTGGTTGCAGAACCAGACG,"Exon (Pou4f2-201/Pou4f2, exon 2 of 2)",8,78433010,78436645,3636,2,Pou4f2-201,1848,Pou4f2-201,Pou4f2,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,23,18997,ENSMUSG00000031688,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
17677,cg04566220,0.0000358,0.00000749,4.786399711,0.00000263,gain,ns,0.0000275,0.0000127,2.161922031,0.031389091,pos,ns,0.002328183,0.003727494,0.624597312,0.532694807,pos,ns,0.273521537,0.000202391,0.000128188,1.578856355,0.115388823,pos,ns,0.163913645,Elavl2,Elavl2_Promoter,4,91375860,91375909,91375860,91375861,50,+,CGCTCACTTACAGGTTTTCTGGGTTTGCCAGCGCATCGCTGCAACTAATG,Promoter (<=1kb),4,91250763,91376463,125701,2,Elavl2-208,554,Elavl2-204;Elavl2-201;Elavl2-207;Elavl2-208;Elavl2-202;Elavl2-209;Elavl2-203;Elavl2-205;Elavl2-215;Elavl2-212;Elavl2-214;Elavl2-211,Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,4,31,15569,ENSMUSG00000008489,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
27016,cg08161081,0.0000341,0.00000896,3.801490123,0.000173166,gain,ns,-0.0000329,0.0000152,-2.161817976,0.031397188,neg,ns,0.014255533,0.004460411,3.196013224,0.001537043,pos,ns,2.813313863,-0.000467623,0.000153393,-3.048528811,0.002497773,neg,ns,0.143784065,Rbm39,Rbm39_threeUTR,2,156177855,156177904,156177903,156177904,50,+,TGGAGGGTTGGGACTGTAAGAGCTTGATGCCACCTCTGTCACACATCTCG,Promoter (<=1kb),2,156172954,156177901,4948,2,Rbm39-210,0,Rbm39-203;Rbm39-217;Rbm39-215;Rbm39-201;Rbm39-225;Rbm39-223;Rbm39-204;Rbm39-216;Rbm39-221;Rbm39-213;Rbm39-214;Rbm39-218;Rbm39-219;Rbm39-210;Rbm39-224;Rbm39-212;Rbm39-202;Rbm39-208;Rbm39-222;Rbm39-205;Rbm39-211,Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,11,13,170791,ENSMUSG00000027620,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U4,Pr-F
11146,cg19069321,0.00000186,0.0000048,0.388086118,0.698218666,gain,ns,0.0000176,0.00000815,2.161574666,0.031416127,pos,ns,0.002979732,0.002386557,1.24854846,0.212772363,pos,ns,0.672084783,0.0000641,0.0000821,0.781567736,0.435065148,pos,ns,0.906678272,Lingo1,Lingo1_Intron,9,56746374,56746423,56746374,56746375,50,-,CGTCTCATTAACATTCGCCTAATTAAGCAGTTTATGAAAGTGTATGGATT,"Intron (Lingo1-206/Lingo1, intron 2 of 6)",9,56618475,56796138,177664,2,Lingo1-206,49715,Lingo1-206;Lingo1-205;Lingo1-207;Lingo1-204;Lingo1-208,Lingo1;Lingo1;Lingo1;Lingo1;Lingo1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,25,235402,ENSMUSG00000049556,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27883,cg17206534,0.00015782,0.000023,6.848101042,4.03E-11,gain,yes,-0.0000846,0.0000392,-2.161326134,0.031435482,neg,ns,0.080383419,0.011470147,7.008054649,1.51E-11,pos,yes,10.8201866,-0.001155334,0.000394457,-2.928920456,0.003653613,neg,ns,0.697573008,Prox1,Prox1_Exon,1,190123294,190123343,190123342,190123343,50,+,TGACCTTGTATATGGCCTTCTTCCAGGAAGGATCAACATCTTTGCCTGCG,"Exon (Prox1-202/Prox1, exon 5 of 5)",1,190118035,190170714,52680,2,Prox1-202,47371,Prox1-202;Prox1-201;Prox1-203,Prox1;Prox1;Prox1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,19,59,19130,ENSMUSG00000010175,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15981,cg02229362,-0.000106764,0.00000919,-11.61406174,3.93E-26,loss,yes,0.0000338,0.0000156,2.161144819,0.03144961,pos,ns,0.014385179,0.004575255,3.144126028,0.001827163,pos,ns,2.738222654,-0.000498051,0.000157343,-3.165389815,0.001702641,neg,ns,0.849555144,Tshz1,Tshz1_Intron,18,84082625,84082674,84082673,84082674,50,-,TGGCTAAACAACCTTACCTTTTTTGATAATTAAGAAGCCGCTTCATTACG,"Intron (Tshz1-201/Tshz1, intron 1 of 1)",18,84011627,84086404,74778,2,Tshz1-201,3730,Tshz1-201;Tshz1-202;Tshz1-203;Tshz1-204,Tshz1;Tshz1;Tshz1;Tshz1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,18,110796,ENSMUSG00000046982,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12533,cg12372536,0.0000157,0.00000549,2.865127543,0.004453179,gain,ns,-0.0000202,0.00000933,-2.16097141,0.031463126,neg,ns,0.000794395,0.002732088,0.290764776,0.771425656,pos,ns,0.112705922,-0.0000416,0.000094,-0.44314079,0.657972988,neg,ns,0.901201846,Plekhm3,Plekhm3_Intron,1,64917132,64917181,64917132,64917133,50,-,CGGTAATTACAGGAATTTGCACTAAATGGCTGAAGAATTCACAGCAAAAC,"Intron (Plekhm3-204/Plekhm3, intron 3 of 8)",1,64785983,64956824,170842,2,Plekhm3-204,39643,Plekhm3-204;Plekhm3-201;Plekhm3-205,Plekhm3;Plekhm3;Plekhm3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,2,241075,ENSMUSG00000051344,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8849,cg09828580,-0.00000772,0.00000372,-2.075742054,0.038741926,loss,ns,-0.0000137,0.00000632,-2.160757627,0.031479797,neg,ns,-0.005623373,0.001851905,-3.036534889,0.002596283,neg,ns,2.585648049,0.000111873,0.0000637,1.756605482,0.079972386,pos,ns,0.933954305,Ldb1,Ldb1_Exon,19,46033268,46033317,46033268,46033269,50,-,CGGGTGATGAGCCTCTCGTCCTCGTCCCCGAACTCCCCGCCCATCAGGGT,"Exon (Ldb1-207/Ldb1, exon 11 of 11)",19,46031570,46045210,13641,2,Ldb1-207,11893,Ldb1-207;Ldb1-206;Ldb1-202;Ldb1-208;Ldb1-201;Ldb1-205;Ldb1-203;Ldb1-204,Ldb1;Ldb1;Ldb1;Ldb1;Ldb1;Ldb1;Ldb1;Ldb1,0;0;0;0;0;0;1561;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,9,16825,ENSMUSG00000025223,conserved gene and region,19,46033191,46033306,116,*,116,12,0.637931035,1.01978022,0.103448276,1.21E-09,CpGisland,TRUE,U10,Tr-S
22513,cg17054542,-0.00000604,0.00000408,-1.479381263,0.140053895,loss,ns,0.000015,0.00000693,2.16074997,0.031480394,pos,ns,0.005029089,0.00203081,2.476395185,0.013805138,pos,ns,1.859959252,-0.00014717,0.0000698,-2.107262818,0.03589774,neg,ns,0.921069303,Rps4l-ps,Rps4l-ps_Intergenic_downstream,7,114897366,114897415,114897414,114897415,50,-,TGCTTCTGGGTTTGACAAATTAGTTTTCACAGAACAAGTTTAATTAGGCG,Distal Intergenic,7,114926959,114927726,768,2,Rps4l-ps-201,30360,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,13,19,627967,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13084,cg21126148,0.0000256,0.0000036,7.117469944,7.68E-12,gain,yes,-0.0000132,0.00000611,-2.160126983,0.031529017,neg,ns,0.000485799,0.00178973,0.271437021,0.786235598,pos,ns,0.104447297,-0.000142319,0.0000615,-2.312295033,0.02141632,neg,ns,0.088642608,Arf6,Arf6_Exon,12,69373105,69373154,69373153,69373154,50,-,CCGCATTATCAATGACCGGGAGATGAGGGACGCCATAATCCTCATCTTCG,Promoter (<=1kb),12,69372150,69373783,1634,1,Arf6-201,955,Arf6-201;Gm18113-201,Arf6;Gm18113,0;-3082,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,8,11845,ENSMUSG00000044147,conserved gene and region,12,69371680,69373175,1496,*,1496,186,0.703877005,1.010385046,0.124331551,4.87E-160,CpGisland,TRUE,NA,NRS
24419,cg17203518,-0.0000841,0.0000273,-3.078240685,0.002268356,loss,ns,0.000100291,0.0000464,2.159792405,0.031555157,pos,ns,-0.002594058,0.013604005,-0.190683417,0.848898446,neg,ns,0.071144261,0.00023966,0.000467841,0.512268134,0.608828132,pos,ns,0.545697155,Grik3,Grik3_Intron,4,125580958,125581007,125581006,125581007,50,+,TCTAAATAATGCATATTCAGCTTCATTAGCATATATTTGGATCATTTCCG,"Intron (Grik3-201/Grik3, intron 1 of 15)",4,125490700,125714173,223474,1,Grik3-201,90258,Grik3-201,Grik3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,14,18,14807,ENSMUSG00000001985,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15917,cg16866297,-0.0000504,0.0000187,-2.696400867,0.007392365,loss,ns,0.0000686,0.0000318,2.159648327,0.031566419,pos,ns,0.00077689,0.009306917,0.083474446,0.933528172,pos,ns,0.029872571,0.0000982,0.000320064,0.30681915,0.75918702,pos,ns,0.740218997,Gm5452,Gm5452_Intron,13,83869241,83869290,83869241,83869242,50,-,CGGACTGATTTTCATACAGGATTTAGACCTGACATTTATTATTCGGTTCA,"Intron (C130071C03Rik-204/C130071C03Rik-204, intron 3 of 3)",13,83832340,83833336,997,1,Gm5452-201,36950,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,16,432789,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7732,cg18582927,0.00000416,0.00000392,1.060699394,0.289652221,gain,ns,0.0000144,0.00000666,2.159362533,0.03158877,pos,ns,0.00643031,0.001949864,3.297824488,0.001087669,pos,ns,2.963503205,-0.000227274,0.0000671,-3.389334823,0.000791211,neg,ns,0.901959385,Arhgap15,Arhgap15_Intron,2,43988794,43988843,43988794,43988795,50,+,CGCTGGTGCAGTAAGCCACTGAACAGGCTATATCAATTCGTTTAGTTTTT,"Intron (Arhgap15-203/Arhgap15, intron 6 of 14)",2,43748824,44395953,647130,1,Arhgap15-203,239970,Arhgap15-203;Arhgap15-202;Arhgap15-201,Arhgap15;Arhgap15;Arhgap15,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,72,78,76117,ENSMUSG00000049744,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18342,cg01444413,-0.00000271,0.00000166,-1.632172072,0.103658582,loss,ns,0.00000608,0.00000282,2.159358142,0.031589113,pos,ns,0.003395312,0.000825537,4.112852236,0.0000501,pos,ns,4.300030744,-0.0000937,0.0000284,-3.302024905,0.001072061,neg,ns,0.959907564,Pogz,Pogz_Exon,3,94862439,94862488,94862487,94862488,50,+,TGTCCGGCCTGTACAAAATGCAATGAATCAGGTTGGGATTGTGCTGAACG,"Exon (Pogz-205/Pogz, exon 5 of 19)",3,94837567,94882326,44760,1,Pogz-205,24872,Pogz-205;Pogz-202;Pogz-207;Pogz-203;Pogz-201;Pogz-204;Pogz-208;Pogz-209,Pogz;Pogz;Pogz;Pogz;Pogz;Pogz;Pogz;Pogz,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,7,229584,ENSMUSG00000038902,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7764,cg15482183,0.000000283,0.00000482,0.058699623,0.95322918,gain,ns,0.0000177,0.0000082,2.158766356,0.031635437,pos,ns,0.008103626,0.002401237,3.374772123,0.000832701,pos,ns,3.079511124,-0.000368528,0.0000826,-4.462763458,0.0000113,neg,ns,0.894176803,Arhgap15,Arhgap15_Intron,2,44208107,44208156,44208107,44208108,50,-,CGAGAGGAATGCTGTAAAATAAATGTCTGGGATACCTTCATAAACAAAAA,"Intron (Arhgap15-203/Arhgap15, intron 11 of 14)",2,43748824,44395953,647130,1,Arhgap15-203,459283,Arhgap15-203;Arhgap15-202;Arhgap15-201,Arhgap15;Arhgap15;Arhgap15,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,72,78,76117,ENSMUSG00000049744,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20245,cg09591915,0.000105554,0.00000798,13.22259075,5.87E-32,gain,yes,-0.0000293,0.0000136,-2.158484455,0.031657525,neg,ns,0.006360182,0.003973137,1.600796108,0.110440626,pos,ns,0.956871139,0.0000259,0.000136636,0.189733701,0.849641983,pos,ns,0.155436997,Hoxc10,Hoxc10_fiveUTR,15,102966841,102966890,102966889,102966890,50,+,AACCCCTCTCTCTGAAAATGACATGCCCTCGCAATGTAACTCCGAACTCG,Promoter (<=1kb),15,102966796,102971893,5098,1,Hoxc10-201,45,Hoxc10-201;Hoxc5-202,Hoxc10;Hoxc5,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,21,209448,ENSMUSG00000022484,mapped to different genes,15,102966870,102967117,248,*,248,20,0.625,0.826666667,0.080645161,1.13E-13,CpGisland,TRUE,U13,Hc-P
23158,cg11427108,0.0000254,0.0000178,1.429300194,0.153924892,gain,ns,-0.0000653,0.0000302,-2.158452281,0.031660046,neg,ns,-0.020072168,0.008862119,-2.264939981,0.024206424,neg,ns,1.616069371,0.00069501,0.000304768,2.280458929,0.023259048,pos,ns,0.669774074,Rnf220,Rnf220_Intron,4,117370737,117370786,117370785,117370786,50,+,CCAAATTCAATCAGGCTGGGGACCCGCAGCAGCATTTATGAGCTCTAACG,"Intron (Rnf220-201/Rnf220, intron 2 of 14)",4,117271463,117497052,225590,2,Rnf220-201,126266,Rnf220-201;Rnf220-202;Rnf220-207,Rnf220;Rnf220;Rnf220,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10498,cg14882356,0.0000275,0.00000724,3.802025248,0.000172809,gain,ns,0.0000265,0.0000123,2.158311954,0.031671047,pos,ns,0.004789082,0.003601161,1.329871617,0.184538222,pos,ns,0.733913667,-0.000121599,0.000123844,-0.981876745,0.326926242,neg,ns,0.763742741,Hecw2,Hecw2_Exon,1,53904352,53904401,53904352,53904353,50,+,CGTTCAAAGTGGTGGGTGTCCCTCCGGACTTTGGTGATCATGTGCTTCAA,"Exon (Hecw2-203/Hecw2, exon 14 of 29)",1,53806876,54194048,387173,2,Hecw2-203,289647,Hecw2-203;Hecw2-201,Hecw2;Hecw2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,6,329152,ENSMUSG00000042807,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5430,cg26757097,-0.00000227,0.00000332,-0.684434496,0.494212197,loss,ns,-0.0000122,0.00000563,-2.158270717,0.03167428,neg,ns,-0.000127711,0.001649998,-0.077400953,0.938354515,neg,ns,0.027633052,-0.000129588,0.0000567,-2.283762474,0.023061607,neg,ns,0.948963972,Rgl2,Rgl2_Exon,17,33936872,33936921,33936920,33936921,50,+,CAGGACAAGGCTCCAAGTGTCATCAGTCGTGTCCTTAAGAAAAACAATCG,"Exon (Rgl2-201/Rgl2, exon 17 of 18)",17,33929582,33937687,8106,1,Rgl2-201,7290,Pfdn6-201;Pfdn6-204;Pfdn6-202;Pfdn6-206;Pfdn6-205;Pfdn6-203;Rgl2-201;Rgl2-205;Rgl2-203;Rgl2-213;Rgl2-210;Rgl2-214;Rgl2-212;Rgl2-207;Rgl2-204;Rgl2-209;Rgl2-208;Rgl2-206;Rgl2-211;Wdr46-201;Wdr46-203;Wdr46-204;Wdr46-202,Pfdn6;Pfdn6;Pfdn6;Pfdn6;Pfdn6;Pfdn6;Rgl2;Rgl2;Rgl2;Rgl2;Rgl2;Rgl2;Rgl2;Rgl2;Rgl2;Rgl2;Rgl2;Rgl2;Rgl2;Wdr46;Wdr46;Wdr46;Wdr46,3422;3404;3383;3389;3409;3410;0;6968;6898;0;5989;0;5964;5937;0;0;0;0;0;-3739;-3796;-4056;-4484,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,19732,ENSMUSG00000041354,mapped to different genes,17,33936899,33937045,147,*,147,10,0.585034014,0.850694444,0.068027211,0.00000233,CpGisland,TRUE,U10,Tr-S
26849,cg23942507,-0.0000135,0.00000793,-1.697397242,0.090625202,loss,ns,0.0000291,0.0000135,2.158195383,0.031680188,pos,ns,0.002345772,0.003947797,0.594197784,0.552813209,pos,ns,0.257421588,-0.000065,0.000135764,-0.479133617,0.632181379,neg,ns,0.925608739,Asxl1,Asxl1_Exon,2,153397952,153398001,153397952,153397953,50,+,CGAAAAGCCACAGCCCACTAAAGAGGAGCCCAAAGTCCCGCCCATCCGGG,"Exon (Asxl1-205/Asxl1, exon 11 of 12)",2,153345829,153404007,58179,1,Asxl1-205,52123,Asxl1-205;Asxl1-201;Asxl1-203,Asxl1;Asxl1;Asxl1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,8,228790,ENSMUSG00000042548,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1975,cg20960390,-0.000032,0.00000763,-4.192224927,0.0000361,loss,ns,0.000028,0.000013,2.158049612,0.031691621,pos,ns,-0.003932592,0.00379861,-1.035271349,0.301349114,neg,ns,0.520930082,0.00027571,0.000130634,2.110555386,0.035611235,pos,ns,0.704906518,Tfec,Tfec_Intergenic_downstream,6,16727667,16727716,16727715,16727716,50,-,TAAAAGTAAAGGCACCCGGTGATGGAACAGTGTCATTTTCAACACTCTCG,Distal Intergenic,6,16834692,16835263,572,2,Tfec-204,107596,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,19,23,21426,ENSMUSG00000029553,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23826,cg06736685,0.0000129,0.00000313,4.128170316,0.0000471,gain,ns,0.0000115,0.00000531,2.157955023,0.031699042,pos,ns,0.01493693,0.001556681,9.595367623,2.92E-19,pos,yes,18.53444567,-0.0000669,0.0000535,-1.248867565,0.212655765,neg,ns,0.058806136,Gse1,Gse1_fiveUTR,8,120488442,120488491,120488490,120488491,50,+,TTCTGGTTCTGAACGTGAAACCCTGTTGGAAACAGGTCTCTTGACCCTCG,Promoter (<=1kb),8,120488447,120581390,92944,1,Gse1-201,0,Galnt2l-201;Gse1-206;Gse1-201,Galnt2l;Gse1;Gse1,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,2,382034,ENSMUSG00000031822,conserved gene but different region,8,120488316,120488539,224,*,224,13,0.589285714,0.736097068,0.058035714,0.000000248,CpGisland,TRUE,U1,Pr-A
11377,cg14083273,-0.00000695,0.0000095,-0.730845155,0.465425748,loss,ns,-0.0000348,0.0000161,-2.157412838,0.031741608,neg,ns,0.013517866,0.004730467,2.857617742,0.004557112,pos,ns,2.341310299,-0.000800943,0.00016268,-4.923413823,0.00000138,neg,yes,0.455616663,Gm12244,Gm12244_Intergenic_upstream,11,57864798,57864847,57864798,57864799,50,-,CGCCTGTTATCTGCACACCCATCTGTGGACAAATGGCCAGCCGGCTGGCT,Distal Intergenic,11,57880896,57881186,291,1,Gm12244-201,-16098,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14321,cg20991105,0.0000107,0.00000453,2.362095281,0.018789741,gain,ns,-0.0000166,0.00000769,-2.157379871,0.031744198,neg,ns,-0.002022278,0.002254074,-0.89716606,0.370326521,neg,ns,0.431415185,0.00000573,0.0000775,0.073886366,0.941148457,pos,ns,0.887122682,Smg6,Smg6_Intron,11,75156698,75156747,75156746,75156747,50,+,GCCTTTGGTCTGATTGTCTTGTAGCTTTTCATGATCACTCTGTTGGTTCG,"Intron (Smg6-201/Smg6, intron 16 of 18)",11,74925823,75164448,238626,1,Smg6-201,230875,Smg6-201;Smg6-202;Smg6-206,Smg6;Smg6;Smg6,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,34,103677,ENSMUSG00000038290,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20061,cg13102585,0.000135058,0.00000923,14.62674388,3.32E-37,gain,yes,-0.0000338,0.0000157,-2.157355298,0.031746129,neg,ns,-0.006101433,0.00459567,-1.327648263,0.185271143,neg,ns,0.732192219,0.0000729,0.000158045,0.461226011,0.644959901,pos,ns,0.292871003,Rundc3a,Rundc3a_Exon,11,102393683,102393732,102393683,102393684,50,+,CGAGCTTTGTCCAGACCACCATGGCTCTGGGGCTGTCCTCCAAGAAAGCG,Promoter (<=1kb),11,102393403,102401754,8352,1,Rundc3a-202,280,Rundc3a-202;Rundc3a-203;Rundc3a-204;Rundc3a-201;Rundc3a-209;Rundc3a-205,Rundc3a;Rundc3a;Rundc3a;Rundc3a;Rundc3a;Rundc3a,0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,6,51799,ENSMUSG00000006575,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
4567,cg09243281,-0.0000247,0.000013,-1.898716566,0.058530149,loss,ns,0.0000478,0.0000221,2.15731152,0.031749568,pos,ns,0.016240959,0.00648751,2.503419434,0.012813939,pos,ns,1.892317345,-0.000259238,0.000223105,-1.161957594,0.246146504,neg,ns,0.30610117,Ranbp6,Ranbp6_Exon,19,29812379,29812428,29812427,29812428,50,+,TCTTGAATACACTGGTCCAACAACCGTTTGATGATATCCAAATCATGCCG,Promoter (<=1kb),19,29808400,29812974,4575,2,Ranbp6-201,546,Ranbp6-201;Ranbp6-202,Ranbp6;Ranbp6,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,240614,ENSMUSG00000074909,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
18240,cg01751209,0.000208177,0.0000114,18.31435442,2.71E-51,gain,yes,-0.0000417,0.0000193,-2.157307874,0.031749855,neg,ns,0.008116513,0.005657417,1.434667602,0.152389878,pos,ns,0.817043878,-0.0000169,0.000194558,-0.086913204,0.930796616,neg,ns,0.555690508,Ap3b1,Ap3b1_Intergenic_downstream,13,94576082,94576131,94576082,94576083,50,+,CGGCAGCCGGTCCCATTGTTTGCCCTTGATGAGCATGTCATTAATGGAAA,Distal Intergenic,13,94542303,94547867,5565,1,Ap3b1-202,33779,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,33,55,11774,ENSMUSG00000021686,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24705,cg04784920,0.000628231,0.0000344,18.27831907,3.72E-51,gain,yes,-0.000125961,0.0000584,-2.157219011,0.031756838,neg,ns,0.016208588,0.017106437,0.947513939,0.344114966,pos,ns,0.463296439,-0.002143355,0.000588289,-3.643371841,0.00031535,neg,ns,0.574360219,Alpk1,Alpk1_Intron,3,127746040,127746089,127746040,127746041,50,-,CGACCTCTGAGGTAAACTGGATTTACATTACTTTCTGACAAGAATTAAAT,"Intron (Alpk1-201/Alpk1, intron 1 of 13)",3,127670310,127780527,110218,2,Alpk1-201,34438,Alpk1-201;Alpk1-203;Alpk1-204,Alpk1;Alpk1;Alpk1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,4,71481,ENSMUSG00000028028,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7557,cg24671118,-0.00000311,0.00000172,-1.805717573,0.071932404,loss,ns,0.0000063,0.00000292,2.157127726,0.031764012,pos,ns,0.001737849,0.000855908,2.030416578,0.043167598,pos,ns,1.364842113,-0.0000489,0.0000294,-1.660766743,0.097771334,neg,ns,0.95176903,Zbtb20,Zbtb20_Intron,16,43191180,43191229,43191228,43191229,50,+,GACAACTGGTCCTACTTCCAGGTCCATCTTTGGGCCAAGATATGTAGTCG,"Intron (Zbtb20-209/Zbtb20, intron 4 of 7)",16,42875881,43463175,587295,1,Zbtb20-209,315299,Zbtb20-209;Zbtb20-211;Zbtb20-217;Zbtb20-218;Zbtb20-204,Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,98,56490,ENSMUSG00000022708,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2200,cg10866873,-0.0000173,0.00000598,-2.89025632,0.004120906,loss,ns,0.0000219,0.0000102,2.15712371,0.031764328,pos,ns,0.010022088,0.002978462,3.36485344,0.00086211,pos,ns,3.064437071,-0.000348433,0.000102429,-3.401696414,0.000757514,neg,ns,0.857015532,Gm6369,Gm6369_Intron,3,18454226,18454275,18454226,18454227,50,-,CGCCTTAGTTCTAGGCAGCATAAATTACACGCATCAATCAGAGGAAGCTT,"Intron (Gm30667-201/Gm30667-201, intron 1 of 5)",3,18533875,18534286,412,1,Gm6369-201,-79649,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,3,622921,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
655,cg01898872,-0.000100896,0.0000135,-7.476368972,7.89E-13,loss,yes,0.0000494,0.0000229,2.156739322,0.031794554,pos,ns,-0.012421012,0.006716749,-1.849259413,0.065372188,neg,ns,1.184606982,0.00013994,0.000230988,0.605831345,0.545070063,pos,ns,0.667978034,Gm11794,Gm11794_Intron,4,7567869,7567918,7567869,7567870,50,+,CGTACAAAATGGAAAGAGCAAGAGAAAACATCTATCACTGGGATTATTAT,"Intron (8430436N08Rik-201/8430436N08Rik-201, intron 2 of 2)",4,7763264,7763500,237,2,Gm11794-201,195582,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,5,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11098,cg09351648,-0.0000257,0.00000769,-3.349045827,0.000910989,loss,ns,0.0000282,0.0000131,2.156712377,0.031796674,pos,ns,0.001561676,0.003825189,0.408261151,0.683363804,pos,ns,0.165348028,-0.0000304,0.000131548,-0.231368688,0.817181027,neg,ns,0.868185182,Gm13527,Gm13527_Intergenic_upstream,2,56573262,56573311,56573262,56573263,50,+,CGTGTATTGTATGGTACATTATCCCTCTAACAGCCCCATGTGGAGATCAT,Distal Intergenic,2,57079748,57080438,691,1,Gm13527-201,-506437,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,13,13,227920,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18782,cg05819250,0.0000452,0.0000216,2.093151098,0.037148161,gain,ns,0.0000791,0.0000367,2.156464281,0.031816197,pos,ns,0.014949011,0.010751786,1.390374604,0.165412544,pos,ns,0.781431558,-0.000468406,0.000369753,-1.266808978,0.206174539,neg,ns,0.783637103,Gm9290,Gm9290_Intergenic_downstream,14,97330260,97330309,97330308,97330309,50,+,TAGTACCTAGATTTATTTTAAGTCTGTAAAGCACTTTGTTCTTGACAGCG,Distal Intergenic,14,97665672,97666291,620,2,Gm9290-201,335982,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,10,668659,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4712,cg03475710,0.00000179,0.0000049,0.366288604,0.714399588,gain,ns,0.0000179,0.00000832,2.15602988,0.031850406,pos,ns,0.006978759,0.002438332,2.862103016,0.004494775,pos,ns,2.347292056,-0.000225476,0.0000839,-2.68890749,0.007556416,neg,ns,0.539475647,Mecom,Mecom_Intron,3,30220930,30220979,30220978,30220979,50,+,ACTTTGCTGACAGCTTGTCACATTTCACTGACTGTCTGTCTGGGGTACCG,"Intron (Mecom-212/Mecom, intron 1 of 15)",3,29951299,30509733,558435,2,Mecom-212,288754,Mecom-212;Mecom-210;Mecom-213;Mecom-207;Mecom-208;Mecom-211,Mecom;Mecom;Mecom;Mecom;Mecom;Mecom,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,80,14013,ENSMUSG00000027684,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
2947,cg10581670,0.00000722,0.000011,0.654346661,0.513373641,gain,ns,0.0000404,0.0000187,2.155761612,0.031871548,pos,ns,0.008118515,0.005491542,1.478367077,0.140324872,pos,ns,0.852865346,0.0000522,0.000188854,0.276303183,0.782499327,pos,ns,0.412118509,Gm11880,Gm11880_Intergenic_upstream,4,22134234,22134283,22134234,22134235,50,-,CGTTAGACTTGAGCAAGCTGGTGCACGCTTCATTAAACTCATAATTATCC,Distal Intergenic,4,22117134,22117532,399,2,Gm11880-201,-16751,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,11,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17344,cg01333334,0.00000308,0.00000419,0.735179591,0.46278594,gain,ns,-0.0000153,0.00000711,-2.155651661,0.031880216,neg,ns,0.00145035,0.002084262,0.695857661,0.487039319,pos,ns,0.312435976,0.0000383,0.0000717,0.534185449,0.5935961,pos,ns,0.887836063,Ube2q1,Ube2q1_threeUTR,3,89782395,89782444,89782443,89782444,50,+,TGGACGTGATAGCTCTGCCTATTGCAGGACAATGATGGCTATTCTAAACG,3' UTR,3,89773616,89784000,10385,1,Ube2q1-201,8779,AC102392.1-201;Ube2q1-201;Ube2q1-203;Ube2q1-202,AC102392.1;Ube2q1;Ube2q1;Ube2q1,3866;0;8535;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,6,70093,ENSMUSG00000042572,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4837,cg06360539,-0.00000478,0.00000307,-1.557961438,0.120262671,loss,ns,0.0000112,0.00000522,2.155201246,0.031915749,pos,ns,0.00406697,0.001528609,2.660569526,0.008206883,pos,ns,2.08582175,-0.000115044,0.0000526,-2.188444829,0.029383175,neg,ns,0.935361921,Phc3,Phc3_threeUTR,3,30914473,30914522,30914473,30914474,50,+,CGATGCCCAAGACTTTGATTATCAGGCTTACGATTCCAACGACTAAGTGC,3' UTR,3,30899371,30969401,70031,2,Phc3-209,54879,Phc3-209;Phc3-201;Phc3-204;Phc3-208;Phc3-202;Phc3-206;Phc3-210,Phc3;Phc3;Phc3;Phc3;Phc3;Phc3;Phc3,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,8,241915,ENSMUSG00000037652,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19777,cg27556260,-0.00000262,0.00000359,-0.730127695,0.465863514,loss,ns,0.0000132,0.0000061,2.155060357,0.03192687,pos,ns,0.002955313,0.001788003,1.652856758,0.099372374,pos,ns,1.002734336,-0.000132707,0.0000615,-2.158220747,0.031678198,neg,ns,0.897599346,Ppp4r3a,Ppp4r3a_Exon,12,101053514,101053563,101053562,101053563,50,-,GATGGATTATATTCAACCAAGTATGAGAATATATCAGTAGCAGCACTTCG,"Exon (Ppp4r3a-201/Ppp4r3a, exon 7 of 15)",12,101039409,101083663,44255,2,Ppp4r3a-201,30100,Ppp4r3a-201;Ppp4r3a-205;Ppp4r3a-202;Ppp4r3a-206;Ppp4r3a-207,Ppp4r3a;Ppp4r3a;Ppp4r3a;Ppp4r3a;Ppp4r3a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,10,68734,ENSMUSG00000041846,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4865,cg19337222,-0.00000845,0.00000174,-4.865702369,0.00000182,loss,yes,0.00000636,0.00000295,2.155046087,0.031927997,pos,ns,0.000260507,0.000864083,0.301484087,0.763247517,pos,ns,0.1173346,0.0000117,0.0000297,0.393308571,0.694361939,pos,ns,0.960088623,Zbtb44,Zbtb44_Exon,9,31066870,31066919,31066870,31066871,50,+,CGCCATGTTCACCAACTCTGGAAATTTAATCGTGCACCTGAGGAGTCTGA,"Exon (Zbtb44-206/Zbtb44, exon 4 of 5)",9,31030644,31070233,39590,1,Zbtb44-205,36226,Zbtb44-205;Zbtb44-201;Zbtb44-206;Zbtb44-202;Zbtb44-204,Zbtb44;Zbtb44;Zbtb44;Zbtb44;Zbtb44,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,15,235132,ENSMUSG00000047412,conserved gene and region,9,31066713,31066901,189,*,189,12,0.486772487,1.07641196,0.063492064,0.00000032,CpGisland,TRUE,U10,Tr-S
27366,cg15548006,-0.00000264,0.00000374,-0.70481628,0.481453763,loss,ns,0.0000137,0.00000635,2.15496808,0.031934156,pos,ns,0.003996904,0.001860751,2.14800578,0.032488023,pos,ns,1.488276714,-0.000122284,0.000064,-1.910955609,0.056932447,neg,ns,0.920931754,Dcaf6,Dcaf6_Exon,1,165367441,165367490,165367441,165367442,50,-,CGCACCCTGTTGCTCGTCAAGTGACATGGATCCGAGCTGTTTGTTAACCA,"Exon (Dcaf6-203/Dcaf6, exon 3 of 7)",1,165328698,165460465,131768,2,Dcaf6-201,92975,Dcaf6-201;Dcaf6-203;Dcaf6-204;Dcaf6-205,Dcaf6;Dcaf6;Dcaf6;Dcaf6,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,74106,ENSMUSG00000026571,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26124,cg13237109,0.0000596,0.0000187,3.193174984,0.00155174,gain,ns,-0.0000683,0.0000317,-2.154679226,0.031956972,neg,ns,0.010269267,0.009288048,1.105643164,0.26973832,pos,ns,0.569057351,-0.000713821,0.000319415,-2.234773768,0.026144489,neg,ns,0.349507196,Sox5,Sox5_Intron,6,144057041,144057090,144057041,144057042,50,+,CGCTGACTGAGTTTATCCAAGGTTTGCAAACTGCTATAATAGCCCAGTAT,"Intron (Sox5-201/Sox5, intron 3 of 14)",6,143828425,144209480,381056,2,Sox5-201,152390,Sox5-201;Sox5-214;Sox5-205;Sox5-202;Sox5-209;Sox5-207;Sox5-210,Sox5;Sox5;Sox5;Sox5;Sox5;Sox5;Sox5,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,71,20678,ENSMUSG00000041540,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10453,cg17249401,0.00000458,0.0000064,0.715778542,0.474666898,gain,ns,-0.0000234,0.0000109,-2.154465163,0.03197389,neg,ns,-0.003693865,0.003187103,-1.159003862,0.247346604,neg,ns,0.606694047,0.0000708,0.000109604,0.646410461,0.518491835,pos,ns,0.856772471,Npas3,Npas3_Intron,12,53605922,53605971,53605922,53605923,50,-,CGCCGGATCTGCCATTTAACTCTGATAATCCAGGACTTGGGAATAAGGAC,"Intron (Npas3-204/Npas3, intron 2 of 10)",12,53248157,54069532,821376,1,Npas3-204,357765,Npas3-204;Npas3-201;Npas3-203,Npas3;Npas3;Npas3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,83,103,27386,ENSMUSG00000021010,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12370,cg23342013,0.0000243,0.00000344,7.05358823,1.14E-11,gain,yes,-0.0000126,0.00000585,-2.154274672,0.031988951,neg,ns,-0.0020712,0.001713143,-1.209005982,0.227581847,neg,ns,0.642862383,0.0000261,0.0000589,0.443334579,0.657832986,pos,ns,0.913415894,Klf7,Klf7_Exon,1,64042347,64042396,64042395,64042396,50,+,CCTGTGTGTTTCCTGTAGTGCCTCGTGAGCTCATCGCTTCGTGCAAAACG,"Exon (Klf7-202/Klf7, exon 3 of 4)",1,64029447,64121491,92045,2,Klf7-202,79095,Klf7-202;Klf7-201,Klf7;Klf7,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,21,93691,ENSMUSG00000025959,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21494,cg11741231,-0.0000896,0.0000138,-6.50246518,3.16E-10,loss,yes,0.0000504,0.0000234,2.153100957,0.032081886,pos,ns,-0.002091041,0.006861461,-0.304751507,0.76075991,neg,ns,0.118752382,-0.000319597,0.000235965,-1.354426065,0.176586858,neg,ns,0.646495154,Zfhx3,Zfhx3_Intron,8,107962812,107962861,107962860,107962861,50,-,GGAGCAAAATTTGAACTTAATATTCCATGAAATAAGCCATTGTAATCACG,"Intron (Zfhx3-204/Zfhx3, intron 1 of 15)",8,107942644,108961630,1018987,1,Zfhx3-204,20168,Zfhx3-204,Zfhx3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,114,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16499,cg02841311,-0.0000159,0.00000975,-1.632326299,0.103626086,loss,ns,-0.0000357,0.0000166,-2.152911821,0.032096883,neg,ns,-0.00605639,0.004854527,-1.247575796,0.213128051,neg,ns,0.671359386,-0.000123829,0.000166947,-0.741730291,0.458812325,neg,ns,0.831528305,Sfxn5,Sfxn5_Intron,6,85222752,85222801,85222800,85222801,50,+,CCATCCATCCCTCCTGGGGGGTCCTGTGGGCAAACTCCAAGAAAGCAGCG,"Intron (Sfxn5-201/Sfxn5, intron 13 of 13)",6,85213049,85333422,120374,2,Sfxn5-201,110621,Sfxn5-201,Sfxn5,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,9,94282,ENSMUSG00000033720,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24950,cg10006197,-0.0000941,0.0000128,-7.382358252,1.44E-12,loss,yes,0.0000466,0.0000217,2.152848449,0.03210191,pos,ns,0.047299229,0.006346649,7.452630706,9.19E-13,pos,yes,12.03654523,-0.001751892,0.000218261,-8.026601437,2.09E-14,neg,yes,0.497856001,Tinagl1,Tinagl1_Exon,4,130169077,130169126,130169077,130169078,50,-,CGAATGCCCTCATCCAGGGTCATGCCCCAGAAGGCGCTGTGGTTCCCAGC,"Exon (Tinagl1-201/Tinagl1, exon 5 of 13)",4,130164454,130174802,10349,2,Tinagl1-201,5676,Tinagl1-201;Tinagl1-203;Tinagl1-206;Tinagl1-209;Tinagl1-202;Tinagl1-207;Tinagl1-204;Tinagl1-208;Tinagl1-205,Tinagl1;Tinagl1;Tinagl1;Tinagl1;Tinagl1;Tinagl1;Tinagl1;Tinagl1;Tinagl1,0;0;-2466;0;0;0;0;5666;5694,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,94242,ENSMUSG00000028776,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12308,cg19374377,0.00000942,0.0000305,0.309211382,0.757368457,gain,ns,0.000111467,0.0000518,2.152670481,0.032116029,pos,ns,0.035927893,0.015169984,2.368354034,0.018480537,pos,ns,1.733285402,-0.000966708,0.000521694,-1.853015438,0.064830294,neg,ns,0.294643074,Gm18541,Gm18541_Intergenic_upstream,9,63880889,63880938,63880937,63880938,50,+,AAATGGCCTACAGCTTGCAATGAATTAAAAGACATGGGCACTGGAGACCG,Distal Intergenic,9,63898265,63898802,538,1,Gm18541-201,-17327,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,13,100417338,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
8485,cg25819831,0.00000558,0.00000384,1.454009219,0.146955408,gain,ns,0.000014,0.00000652,2.152654686,0.032117283,pos,ns,0.009574511,0.001908809,5.015960856,0.00000089,pos,ns,6.050543719,-0.000132771,0.0000656,-2.02259101,0.043973615,neg,ns,0.0888768,Lbx1,Lbx1_Intergenic_downstream,19,45226034,45226083,45226082,45226083,50,+,AATCGCCCGTAAAATTGAAGTTTGAAGTATTAAGAGGCTCTGCAGAAACG,Distal Intergenic,19,45232684,45235812,3129,2,Lbx1-201,9729,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,30,50,16814,ENSMUSG00000025216,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
23727,cg06640770,0.000083,0.00000864,9.608088553,2.66E-19,gain,yes,-0.0000316,0.0000147,-2.152465729,0.03213228,neg,ns,0.008525494,0.004301723,1.98187897,0.048375726,pos,ns,1.315372502,-0.000463594,0.000147936,-3.13374867,0.00189094,neg,ns,0.265997767,Rbm19,Rbm19_Intergenic_downstream,5,120231956,120232005,120231956,120231957,50,+,CGAGATGTACTATAAATGATGTTTGATTAGAATTTAAATCATTTAGGCAG,Distal Intergenic,5,120175725,120197969,22245,1,Rbm19-210,56231,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,12,13,74111,ENSMUSG00000029594,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
21971,cg14032896,-0.00000768,0.00000344,-2.23282609,0.026274127,loss,ns,0.0000126,0.00000584,2.1521766,0.03215524,pos,ns,0.003722738,0.001711169,2.175552459,0.030343944,pos,ns,1.517927965,-0.000106418,0.0000588,-1.80838539,0.071515439,neg,ns,0.928692979,Faf1,Faf1_Intron,4,109863458,109863507,109863506,109863507,50,+,CTAGTAATAAGAGTTTGCAGGTTACAGAGACACCTGTGGTGACCAAAGCG,"Intron (Faf1-201/Faf1, intron 13 of 18)",4,109676588,109963960,287373,1,Faf1-201,186870,Faf1-201;Faf1-203,Faf1;Faf1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,24,14084,ENSMUSG00000010517,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10167,cg02005600,0.00021283,0.0000169,12.6275416,8.95E-30,gain,yes,-0.0000616,0.0000286,-2.152140465,0.032158111,neg,ns,0.02774416,0.008388606,3.307362537,0.001052528,pos,ns,2.977766423,-0.000850355,0.000288483,-2.947672094,0.003444884,neg,ns,0.302662254,Gm28308,Gm28308_Intron,6,52204762,52204811,52204810,52204811,50,+,TCCCTCGCAGTTCCATTAGGATGTACCAATTGTTAGGCCGTCAGCTGCCG,"Intron (Hoxaas3-202/Hoxaas3-202, intron 1 of 2)",6,52163359,52213339,49981,2,Gm28308-201,8528,Gm28308-201;Hoxa3-201;Hoxa3-203;Hoxa5-201;Hoxa6-201,Gm28308;Hoxa3;Hoxa3;Hoxa5;Hoxa6,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,46,103,,NA,mapped to different genes,6,52204767,52204843,77,*,77,8,0.584415584,1.222222222,0.103896104,0.00000163,CpGisland,TRUE,U13,Hc-P
17346,cg15663090,-0.000000701,0.00000228,-0.307296471,0.758824055,loss,ns,0.00000834,0.00000388,2.151890804,0.032177949,pos,ns,0.002099938,0.001135278,1.849712118,0.065306676,pos,ns,1.18504242,-0.000069,0.000039,-1.767603091,0.078110993,neg,ns,0.951758899,Agap1,Agap1_Intron,1,89798635,89798684,89798683,89798684,50,-,AGTGCCTTTCTAGTTGCCACACAGTGATGTGATCATTATCTGCCACCTCG,"Intron (Agap1-201/Agap1, intron 13 of 17)",1,89454806,89897617,442812,1,Agap1-201,343829,Agap1-201;Agap1-204;Agap1-202;Agap1-205,Agap1;Agap1;Agap1;Agap1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,29,347722,ENSMUSG00000055013,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13458,cg07525158,0.0000468,0.00000871,5.379865148,0.000000147,gain,yes,-0.0000318,0.0000148,-2.15163681,0.032198143,neg,ns,-0.00671033,0.004334168,-1.548239525,0.122584888,neg,ns,0.911563067,0.000193862,0.000149052,1.300639381,0.194347944,pos,ns,0.853246629,Fgf17,Fgf17_Exon,14,70638917,70638966,70638965,70638966,50,-,GTCGGTCATGGCGCCCTGGTCCCTCACGTACTGGTTAAAATTAGGAGACG,"Exon (Fgf17-201/Fgf17, exon 3 of 5)",14,70636203,70642268,6066,2,Fgf17-201,3302,Dmtn-202;Dmtn-209;Fgf17-201;Fgf17-202,Dmtn;Dmtn;Fgf17;Fgf17,-2869;-2939;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,14171,ENSMUSG00000022101,conserved gene and region,14,70638802,70638986,185,*,185,14,0.589189189,0.872053872,0.075675676,2.48E-09,CpGisland,TRUE,U13,Hc-P
19785,cg12313719,-0.00000323,0.00000127,-2.556298809,0.011055721,loss,ns,0.00000462,0.00000215,2.151620006,0.032199479,pos,ns,0.001992753,0.000629645,3.164883328,0.001705513,pos,ns,2.76814487,-0.0000437,0.0000217,-2.019130711,0.044334069,neg,ns,0.036488099,Msl2,Msl2_Exon,9,101075344,101075393,101075344,101075345,50,+,CGGAGACCCCAAGGCGTTTACTGAGATTAACAGGCTCTTGCCTTACTTCC,"Exon (Msl2-202/Msl2, exon 1 of 3)",9,101074101,101101785,27685,1,Msl2-202,1243,Msl2-202;Msl2-201,Msl2;Msl2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,19,77853,ENSMUSG00000066415,conserved gene and region,9,101075182,101075428,247,*,247,16,0.514170041,0.987506247,0.064777328,1.37E-09,CpGisland,TRUE,U1,Pr-A
9976,cg14435709,-0.0000682,0.000014,-4.870640745,0.00000178,loss,yes,-0.0000512,0.0000238,-2.151566468,0.032203737,neg,ns,-0.014249559,0.006969558,-2.044542683,0.041744389,neg,ns,1.379401896,-0.0000849,0.000239683,-0.354245064,0.723396069,neg,ns,0.661798306,Hectd1,Hectd1_Exon,12,51768985,51769034,51768985,51768986,50,+,CGTTTTCAGCAGATGAAAGAACAACAATTGGTTCATGGACATCAGCTCCT,"Exon (Hectd1-201/Hectd1, exon 25 of 43)",12,51743722,51829536,85815,2,Hectd1-201,60502,Hectd1-201;Hectd1-202;Hectd1-204,Hectd1;Hectd1;Hectd1,0;0;-3754,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,19,19,207304,ENSMUSG00000035247,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1906,cg07597208,-0.00000363,0.00000508,-0.714734247,0.47531115,loss,ns,0.0000186,0.00000863,2.15150323,0.032208768,pos,ns,0.001421105,0.002527495,0.562258453,0.574346268,pos,ns,0.240826196,-0.0000188,0.0000869,-0.215796218,0.829288514,neg,ns,0.954741396,Ythdf3,Ythdf3_Exon,3,16204439,16204488,16204439,16204440,50,-,CGAAACTTAAACCCAAGGGCAATGTGGGAATTGGGGGTTCTGCTGTACCA,"Exon (Ythdf3-201/Ythdf3, exon 4 of 5)",3,16183212,16217037,33826,1,Ythdf3-201,21227,Ythdf3-201;Ythdf3-204;Ythdf3-203;Ythdf3-202,Ythdf3;Ythdf3;Ythdf3;Ythdf3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,8,229096,ENSMUSG00000047213,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13962,cg23627317,-0.00000179,0.00000336,-0.533883917,0.593804464,loss,ns,0.0000123,0.00000571,2.151080428,0.032242416,pos,ns,0.003694117,0.001671698,2.209798829,0.027849645,pos,ns,1.55518033,-0.00010775,0.0000575,-1.874249874,0.061836342,neg,ns,0.931803611,Atf2,Atf2_Exon,2,73853818,73853867,73853818,73853819,50,-,CGTGCTGGACCAAATTTCAGTGTCATCTCATGTTTATGTTTATGGACAGC,"Exon (Atf2-201/Atf2, exon 5 of 14)",2,73816509,73892536,76028,2,Atf2-205,38669,Atf2-205;Atf2-202;Atf2-201;Atf2-204;Atf2-206;Atf2-218;Atf2-203;Atf2-207;Atf2-219;Atf2-215;Atf2-212;Atf2-214;Atf2-216;Atf2-210;Atf2-211,Atf2;Atf2;Atf2;Atf2;Atf2;Atf2;Atf2;Atf2;Atf2;Atf2;Atf2;Atf2;Atf2;Atf2;Atf2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;-3214,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,11909,ENSMUSG00000027104,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1101,cg01931348,-0.00000581,0.00000248,-2.339685945,0.019934434,loss,ns,0.00000907,0.00000422,2.150972268,0.032251029,pos,ns,0.002879983,0.001235356,2.331298724,0.02037834,pos,ns,1.6908312,-0.0000768,0.0000425,-1.807822384,0.071603268,neg,ns,0.953329,Gm14515,Gm14515_Intergenic_upstream,X,11562911,11562960,11562959,11562960,50,-,GAACCCCATGGTTTTCATTGAATTAAATATGAAAATGTATCATACAATCG,Distal Intergenic,20,11601354,11601569,216,1,Gm14515-201,-38443,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,21,28,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19189,cg24975211,0.0000332,0.0000073,4.55170569,0.00000765,gain,ns,-0.0000267,0.0000124,-2.150541998,0.032285311,neg,ns,0.011963661,0.003632482,3.293523006,0.001103871,pos,ns,2.95708156,-0.000278521,0.000124921,-2.229583242,0.026491211,neg,ns,0.862596795,Nr1d1,Nr1d1_threeUTR,11,98768102,98768151,98768150,98768151,50,+,TTTTATAACAATATAAATAAGATTCTGGTTTGCTTTTCCTTTTCGTCTCG,3' UTR,11,98767932,98775333,7402,2,Nr1d1-201,7182,Nr1d1-201;Nr1d1-202;Thra-201;Thra-202;Thra-203,Nr1d1;Nr1d1;Thra;Thra;Thra,0;2275;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,9,217166,ENSMUSG00000020889,mapped to different genes,11,98768145,98768493,349,*,349,27,0.633237822,0.781732205,0.077363897,8.51E-18,CpGisland,TRUE,NA,NRS
27691,cg09315446,-0.000159807,0.0000323,-4.946650522,0.00000124,loss,yes,0.00011803,0.0000549,2.15053595,0.032285793,pos,ns,0.096453536,0.016079084,5.998695853,5.54E-09,pos,ns,8.256571204,-0.003053586,0.000552958,-5.522270531,7.09E-08,neg,yes,0.586646616,Zbtb18,Zbtb18_Intergenic_upstream,1,177364545,177364594,177364545,177364546,50,+,CGATGCTGGCACAGGTGTCACAACCTCAACAGCTGGCACAAGTTGTGACA,Distal Intergenic,1,177442351,177447237,4887,1,Zbtb18-209,-77757,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,22,30928,ENSMUSG00000063659,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12458,cg10201451,-0.00000581,0.00000194,-3.000380038,0.00291523,loss,ns,0.00000708,0.00000329,2.150474945,0.032290656,pos,ns,-0.000256038,0.000964603,-0.265433155,0.790852222,neg,ns,0.101904661,0.0000391,0.0000332,1.177287799,0.23998374,pos,ns,0.953648685,Gm28980,Gm28980_Intergenic_downstream,1,64391670,64391719,64391670,64391671,50,+,CGCTTCTGGAAATGCCCGAGCAGCTGTCAGGACATTTGATAGATTTTCTC,Distal Intergenic,1,64454359,64454577,219,2,Gm28980-201,62858,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,3,102639846,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2850,cg02219962,0.00000193,0.00000046,4.188811812,0.0000366,gain,ns,-0.00000168,0.000000782,-2.150153908,0.032316259,neg,ns,0.0000374,0.000229029,0.163175588,0.870486509,pos,ns,0.060237955,-0.0000137,0.00000788,-1.733073913,0.084076947,neg,ns,0.01273515,Zfp503,Zfp503_fiveUTR,14,21987948,21987997,21987996,21987997,50,+,GGAGCCCGAGGTGATTGGAGGGTCAAGGGGATGTGACGCGTCCCGCGCCG,5' UTR,14,21983959,21989601,5643,2,Zfp503-201,1604,Zfp503-201,Zfp503,0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,27,218820,ENSMUSG00000039081,mapped to different genes,14,21987271,21988006,736,*,736,86,0.713315217,0.928039411,0.116847826,1.05E-71,CpGisland,TRUE,U3,Pr-B
12522,cg23525349,-0.000013,0.00000924,-1.403440335,0.161486442,loss,ns,0.0000338,0.0000157,2.15006257,0.032323546,pos,ns,0.013246335,0.004598995,2.880267377,0.004250183,pos,ns,2.371592405,-0.000389352,0.000158159,-2.461777929,0.01436914,neg,ns,0.852581565,Dennd4a,Dennd4a_Exon,9,64857671,64857720,64857719,64857720,50,-,ATTTCTCATTTTATGCATAAAGTTCCTTTTCCATCTCCTCAGAGACCACG,"Exon (Dennd4a-201/Dennd4a, exon 9 of 34)",9,64811340,64919667,108328,1,Dennd4a-201,46331,Dennd4a-201;Dennd4a-207,Dennd4a;Dennd4a,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,102442,ENSMUSG00000053641,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18399,cg15578558,0.0000185,0.00000971,1.910406318,0.057003363,gain,ns,0.0000355,0.0000165,2.15002367,0.032326651,pos,ns,-0.000178934,0.004832459,-0.037027574,0.970486852,neg,ns,0.013010344,0.0000659,0.000166188,0.396651296,0.691897531,pos,ns,0.725124319,Arhgef9,Arhgef9_Exon,X,95130877,95130926,95130925,95130926,50,+,TCTGGCCCCACCACCAATCCTTGTTGGAAGCATCCAAGACTTTGATGACG,"Exon (Arhgef9-202/Arhgef9, exon 2 of 10)",20,95048935,95166361,117427,2,Arhgef9-202,35435,Arhgef9-202;Arhgef9-217;Arhgef9-205;Arhgef9-207;Arhgef9-210;Arhgef9-203;Arhgef9-209;Arhgef9-206;Arhgef9-208;Arhgef9-204;Arhgef9-216;Arhgef9-219;Arhgef9-201;Arhgef9-218;Arhgef9-220;Arhgef9-213;Arhgef9-214,Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,14,236915,ENSMUSG00000025656,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9166,cg01528388,0.0000819,0.00000892,9.185960652,6.02E-18,gain,yes,-0.0000326,0.0000152,-2.149986185,0.032329642,neg,ns,0.011865596,0.004438582,2.673285132,0.007909025,pos,ns,2.101877053,-0.000562091,0.000152642,-3.682400939,0.000272498,neg,ns,0.24111686,Cadm1,Cadm1_Intron,9,47332474,47332523,47332522,47332523,50,-,TAATTACTTCAGTCAGACATTATTTACTTAAGTAATTCTTTACTCAAACG,"Intron (Gm31816-202/Gm31816-202, intron 2 of 6)",9,47530173,47853385,323213,1,Cadm1-204,-197699,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,77,54725,ENSMUSG00000032076,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12508,cg20980578,-0.00000638,0.00000617,-1.033282386,0.302277182,loss,ns,0.0000225,0.0000105,2.149978407,0.032330263,pos,ns,0.007276976,0.003070965,2.369605531,0.018419249,pos,ns,1.734728081,-0.000241839,0.00010561,-2.289920723,0.022697451,neg,ns,0.897585008,Zfp654,Zfp654_Exon,16,64791878,64791927,64791926,64791927,50,-,AGAGCCATTGCTTCGGGTATGCGTTCACAAGCAATTAGGTATCTGGCACG,"Exon (Zfp654-202/Zfp654, exon 5 of 9)",16,64780347,64851652,71306,2,Zfp654-202,59725,Zfp654-202,Zfp654,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,72020,ENSMUSG00000047141,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8870,cg12313426,-0.00000549,0.00000251,-2.182362685,0.029833104,loss,ns,-0.00000918,0.00000427,-2.149947546,0.032332726,neg,ns,-0.000199428,0.001251602,-0.159338616,0.87350586,neg,ns,0.058734177,-0.00010762,0.000043,-2.500322469,0.012924226,neg,ns,0.92568209,Gtpbp2,Gtpbp2_threeUTR,17,46165888,46165937,46165888,46165889,50,-,CGCCAGCTGGAGCGGGTCCTCAAGCAGCCTGGCTGCCACAAGGTCCCCAT,3' UTR,17,46161032,46169368,8337,1,Gtpbp2-211,4856,Gtpbp2-211;Gtpbp2-201;Gtpbp2-203;Gtpbp2-217;Gtpbp2-206;Gtpbp2-204;Gtpbp2-216;Gtpbp2-209;Gtpbp2-215;Gtpbp2-214;Gtpbp2-212;Gtpbp2-202;Gtpbp2-205;Gtpbp2-213;Gtpbp2-210;Gtpbp2-208;Gtpbp2-207,Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2,0;0;4839;0;4777;4727;4593;2855;0;0;0;0;0;-930;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,threeUTR,7,7,56055,ENSMUSG00000023952,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11841,cg20947912,-0.0000055,0.00000457,-1.204589036,0.229280834,loss,ns,0.0000167,0.00000776,2.149926431,0.032334411,pos,ns,0.006706713,0.002272546,2.951189888,0.003406963,pos,ns,2.4676326,-0.000171121,0.0000782,-2.189576133,0.029300136,neg,ns,0.926461935,Uaca,Uaca_Exon,9,61103276,61103325,61103324,61103325,50,+,TTAAATAAGCAATATTTGTGGAATAATTTGACTTCCATTCTGGGCTCGCG,"Exon (4933433G08Rik-201/4933433G08Rik-201, exon 2 of 2)",9,60866145,60870130,3986,1,Uaca-204,237131,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,7,72565,ENSMUSG00000034485,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4135,cg07417146,0.000138956,0.0000127,10.96952974,7.09E-24,gain,yes,-0.0000463,0.0000215,-2.149475757,0.032370399,neg,ns,0.011701522,0.00630472,1.855993888,0.064403236,pos,ns,1.191092308,-0.000412865,0.000216819,-1.904195666,0.057810332,neg,ns,0.820502078,Syngap1,Syngap1_fiveUTR,17,26953096,26953145,26953096,26953097,50,+,CGGACCAGCAGCTTTCGCCAGATCCTGCCTCGCTTCCGAAGTGCTGACCA,5' UTR,17,26941253,26972434,31182,1,Syngap1-204,11843,Syngap1-204;Syngap1-213;Syngap1-208;Syngap1-202;Syngap1-207;Syngap1-203;Syngap1-201;Syngap1-212;Syngap1-214;Syngap1-211,Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,18,240057,ENSMUSG00000067629,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19322,cg21639828,-0.00000103,0.00000284,-0.362269778,0.717397278,loss,ns,0.0000104,0.00000482,2.149468027,0.032371017,pos,ns,0.0040195,0.001412862,2.844934615,0.004737666,pos,ns,2.324435536,-0.0000995,0.0000486,-2.047372749,0.041464109,neg,ns,0.962481289,Dock7,Dock7_Exon,4,98992388,98992437,98992436,98992437,50,-,CCCGTTAATGTTTGTAAGAAACTTGACGTCTCTGTGTGCGAAGACATACG,"Exon (Dock7-201/Dock7, exon 24 of 49)",4,98936671,99120915,184245,2,Dock7-201,128478,Dock7-201;Dock7-205;Dock7-204;Dock7-202;Dock7-214;Dock7-211;Dock7-206;Dock7-216,Dock7;Dock7;Dock7;Dock7;Dock7;Dock7;Dock7;Dock7,0;0;0;0;0;0;0;2521,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,9,67299,ENSMUSG00000028556,conserved gene but different region,4,98992385,98992567,183,*,183,12,0.464480874,1.22956327,0.065573771,0.000000226,CpGisland,TRUE,NA,NRS
7470,cg02516167,0.0000152,0.00000411,3.705531847,0.000249755,gain,ns,0.000015,0.00000699,2.149464835,0.032371272,pos,ns,0.003365319,0.002046584,1.644358636,0.101115808,pos,ns,0.995180943,-0.0000219,0.0000704,-0.311782937,0.755415078,neg,ns,0.0858678,Pou3f3,Pou3f3_Intron,1,42704687,42704736,42704735,42704736,50,+,AATACAAACCGATCCTGCCTTTCAATTACAGATCAAAATGGCTTGAAACG,"Intron (Gm20646-202/Gm20646-202, intron 1 of 1)",1,42695768,42703176,7409,1,Pou3f3-201,8919,Pou3f3-202;Pou3f3-201,Pou3f3;Pou3f3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,37,18993,ENSMUSG00000045515,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
6616,cg26494183,0.0000136,0.00000135,10.08228595,7.32E-21,gain,yes,-0.00000492,0.00000229,-2.148913928,0.032415312,neg,ns,0.001949623,0.000670881,2.906064405,0.00392363,pos,ns,2.406312004,-0.0000566,0.0000231,-2.451429622,0.01478068,neg,ns,0.013043065,Msx1,Msx1_Promoter,5,37828915,37828964,37828963,37828964,50,+,AATCAGGCGTAACGAACCACTTTGCTGCTGACGAATAACAAAGGCGCACG,Promoter (4-5kb),5,37820485,37824583,4099,2,Msx1-201,-4332,Msx1-201;Msx1-202,Msx1;Msx1,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,8,14,17701,ENSMUSG00000048450,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
7485,cg19424441,0.0000119,0.0000188,0.632476491,0.527541781,gain,ns,-0.0000686,0.0000319,-2.14891163,0.032415496,neg,ns,0.006819677,0.009352428,0.729187936,0.466437265,pos,ns,0.33120676,-0.000333266,0.000321629,-1.036181129,0.300925238,neg,ns,0.746652637,Hpse2,Hpse2_Exon,19,42788982,42789031,42789030,42789031,50,+,TGACCACATAAAAGCCCATGGTGACTGGAGGGATGACCAATGTCCGGCCG,"Exon (Hpse2-201/Hpse2, exon 12 of 12)",19,42786539,43388355,601817,2,Hpse2-201,599324,Hpse2-201,Hpse2,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,6,545291,ENSMUSG00000074852,conserved gene but different region,19,42789026,42789073,48,*,48,7,0.770833333,1,0.145833333,0.000000957,CpGisland,TRUE,U11,Tr-P
17954,cg24790812,0.000008,0.000012,0.668211753,0.504495642,gain,ns,0.0000437,0.0000203,2.148618976,0.032438912,pos,ns,0.00712271,0.005958615,1.195363355,0.232858724,pos,ns,0.632907486,-0.000056,0.000204916,-0.273508316,0.784644634,neg,ns,0.704894106,Mageb18,Mageb18_Intergenic_upstream,X,92790633,92790682,92790681,92790682,50,+,CCACGCTTCTCTGCCAGCACAGCTGGTGTTTAACACCACTGACTTCAGCG,Distal Intergenic,20,92118879,92599572,480694,2,Mageb18-202,-191061,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,215641,ENSMUSG00000067649,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23235,cg13019223,-0.00000124,0.0000017,-0.728869565,0.466631729,loss,ns,-0.00000619,0.00000288,-2.14824526,0.032468836,neg,ns,0.001226704,0.000843702,1.453954353,0.14697061,pos,ns,0.832769502,-0.0000561,0.000029,-1.93519915,0.053875192,neg,ns,0.968275805,Eri3,Eri3_Intron,4,117576416,117576465,117576416,117576417,50,-,CGGGTAATTTATAAGCTTTGCCCTAAAATCTAATTATTTGGCAATTCGAA,"Intron (Eri3-201/Eri3, intron 3 of 8)",4,117550365,117674297,123933,1,Eri3-201,26051,Eri3-201;Eri3-205;Eri3-206,Eri3;Eri3;Eri3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,82,97,140546,ENSMUSG00000033423,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10784,cg20345133,-0.00000271,0.00000349,-0.777579681,0.437409845,loss,ns,0.0000127,0.00000593,2.148176522,0.032474342,pos,ns,0.004691265,0.001736185,2.702054443,0.007270724,pos,ns,2.138422356,-0.000141966,0.0000597,-2.377697134,0.018027283,neg,ns,0.933675823,Vti1a,Vti1a_Intron,19,55408126,55408175,55408174,55408175,50,-,TGTTTCTTTGAAGCCTACCAGGGCTTTGAATCTTGCTGTGCCAATGGGCG,"Intron (Vti1a-206/Vti1a, intron 5 of 7)",19,55316295,55577001,260707,1,Vti1a-206,91831,Vti1a-206;Vti1a-202;Vti1a-201;Vti1a-203,Vti1a;Vti1a;Vti1a;Vti1a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,32,53611,ENSMUSG00000024983,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22020,cg04203737,-0.0000135,0.00000499,-2.715685986,0.00698482,loss,ns,0.0000182,0.00000847,2.147513701,0.03252748,pos,ns,0.004689441,0.002482006,1.889375435,0.059774582,pos,ns,1.223483455,-0.000195072,0.0000854,-2.28539113,0.022964807,neg,ns,0.893254059,Elavl4,Elavl4_threeUTR,4,110204498,110204547,110204546,110204547,50,-,ATATAACCGTACAAAGCACAAACATACTAAAATGATCAGTGCACTGGACG,3' UTR,4,110203722,110287527,83806,2,Elavl4-204,82980,Elavl4-204;Elavl4-201;Elavl4-203;Elavl4-202;Elavl4-205;Elavl4-206;Elavl4-207;Elavl4-211,Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,8,36,15572,ENSMUSG00000028546,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1688,cg01433318,-0.0000233,0.00000379,-6.134211185,2.61E-09,loss,yes,0.0000138,0.00000644,2.147356742,0.032540075,pos,ns,0.000219413,0.001888125,0.116206831,0.907563866,pos,ns,0.042122803,0.00000245,0.0000649,0.037716858,0.969937711,pos,ns,0.932109866,Tle4,Tle4_Intron,19,14566785,14566834,14566833,14566834,50,-,CACACACTTCTAATGGCCTATGTTTTGAAACTGAGTCTAATATAATGGCG,"Intron (Tle4-201/Tle4, intron 4 of 19)",19,14448150,14598051,149902,2,Tle4-201,31217,Tle4-201;Tle4-202;Tle4-203,Tle4;Tle4;Tle4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,29,21888,ENSMUSG00000024642,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15534,cg08373049,-0.0000016,0.00000297,-0.536675917,0.591876427,loss,ns,-0.0000108,0.00000505,-2.147307689,0.032544011,neg,ns,-0.000229719,0.001480169,-0.155197564,0.876766571,neg,ns,0.057116017,-0.000013,0.0000509,-0.256150909,0.798004208,neg,ns,0.916515678,Ep300,Ep300_Exon,15,81633966,81634015,81633966,81633967,50,+,CGGAACAGTTCACCCCAGTATGGCCTTCTTGCCGACAGGTATCATTTCTG,Promoter (<=1kb),15,81633979,81640529,6551,1,Ep300-207,0,Ep300-201;Ep300-207;Ep300-204,Ep300;Ep300;Ep300,0;0;-2133,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,7,328572,ENSMUSG00000055024,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1910,cg10132456,-0.0000037,0.0000047,-0.787537128,0.431569221,loss,ns,0.0000172,0.00000799,2.14728729,0.032545649,pos,ns,0.006694241,0.002340258,2.860470863,0.004517368,pos,ns,2.34511449,-0.000256023,0.0000805,-3.181152938,0.001615445,neg,ns,0.919648519,Ythdf3,Ythdf3_threeUTR,3,16214822,16214871,16214822,16214823,50,+,CGAGCCTGATTGCTATCATGAAGTAAAAATTTATTACTCTAGGTATTCAC,3' UTR,3,16183212,16217037,33826,1,Ythdf3-201,31610,Ythdf3-201;Ythdf3-203;Ythdf3-202,Ythdf3;Ythdf3;Ythdf3,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,8,229096,ENSMUSG00000047213,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19909,cg03885761,0.0000122,0.0000114,1.075796977,0.282854608,gain,ns,-0.0000415,0.0000193,-2.147109307,0.032559937,neg,ns,0.010258959,0.005661309,1.812117731,0.070935437,pos,ns,1.149136749,-0.000675758,0.000194692,-3.470908107,0.000592301,neg,ns,0.766299606,Ogt,Ogt_Exon,X,101652143,101652192,101652191,101652192,50,-,TTGTACTGTGTTCGCAGTGACCTGGGGAACCTGCTCAAAGCCCTGGGTCG,"Exon (Ogt-202/Ogt, exon 5 of 23)",20,101640060,101682940,42881,1,Ogt-202,12083,Ogt-202;Ogt-206;Ogt-201;Ogt-205;Ogt-204;Ogt-207;Ogt-203,Ogt;Ogt;Ogt;Ogt;Ogt;Ogt;Ogt,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,32,33,108155,ENSMUSG00000034160,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5800,cg21694863,-0.00000503,0.00000224,-2.249670601,0.025171196,loss,ns,-0.00000816,0.0000038,-2.147093089,0.032561239,neg,ns,0.003731619,0.00111296,3.352877385,0.00089891,pos,ns,3.046283767,-0.000174914,0.0000383,-4.569967923,0.00000705,neg,ns,0.942653881,Fbxw2,Fbxw2_Exon,2,34822985,34823034,34822985,34822986,50,-,CGTCAGAGAAAGAAATGTAACAGAAATGTTATCAAGCCATGTCTCAAAGT,"Exon (Fbxw2-201/Fbxw2, exon 2 of 7)",2,34805178,34826073,20896,2,Fbxw2-201,3039,Fbxw2-213;Fbxw2-201;Fbxw2-205;Fbxw2-202;Fbxw2-204;Fbxw2-206;Fbxw2-203;Fbxw2-208;Fbxw2-211;Fbxw2-209;Fbxw2-214;Fbxw2-212;Fbxw2-207,Fbxw2;Fbxw2;Fbxw2;Fbxw2;Fbxw2;Fbxw2;Fbxw2;Fbxw2;Fbxw2;Fbxw2;Fbxw2;Fbxw2;Fbxw2,0;0;0;0;0;0;0;0;0;0;0;0;3181,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,2,30050,ENSMUSG00000035949,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7946,cg17470118,-0.00000369,0.0000066,-0.558408522,0.576968547,loss,ns,0.0000241,0.0000112,2.146922964,0.032574903,pos,ns,0.007679207,0.003286161,2.33683214,0.020084515,pos,ns,1.69713866,-0.000200821,0.000113011,-1.777009211,0.076547224,neg,ns,0.876683374,Ebf1,Ebf1_Intron,11,44657307,44657356,44657355,44657356,50,+,GTAATTGTATAAACTGCCTTTTAAATAATATCTTTTAGAAGATTCCATCG,"Intron (Ebf1-203/Ebf1, intron 6 of 15)",11,44617317,45004995,387679,1,Ebf1-203,39990,Ebf1-203;Ebf1-202;Ebf1-201,Ebf1;Ebf1;Ebf1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,80,13591,ENSMUSG00000057098,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5323,cg26488824,-0.00000408,0.00000465,-0.87807274,0.380584277,loss,ns,-0.0000169,0.00000789,-2.146789739,0.032585606,neg,ns,-0.002916831,0.002312227,-1.26148147,0.208083839,neg,ns,0.681761649,0.0000126,0.0000795,0.157899645,0.87463868,pos,ns,0.891609104,Zfp148,Zfp148_Exon,16,33434695,33434744,33434695,33434696,50,-,CGAAATGCAGTCTTCCAGGACAATGGTTGTAATGGGTGGAGTGTCTGGCC,"Exon (Zfp148-202/Zfp148, exon 4 of 9)",16,33380836,33504363,123528,1,Zfp148-202,53859,Zfp148-202;Zfp148-205;Zfp148-204;Zfp148-201,Zfp148;Zfp148;Zfp148;Zfp148,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,7,22661,ENSMUSG00000022811,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14015,cg10907515,-0.000014,0.0000059,-2.371461282,0.018328698,loss,ns,0.0000215,0.00001,2.146626174,0.03259875,pos,ns,0.004620838,0.002938077,1.572742185,0.116798554,pos,ns,0.932562533,-0.000230817,0.00010104,-2.284410319,0.023023059,neg,ns,0.881767326,Wdr72,Wdr72_Intron,9,74225925,74225974,74225973,74225974,50,-,AGAAATCAGATTTGGTGTGTATTTTTACACCAAATCAAATTGTGCAGGCG,"Intron (Wdr72-201/Wdr72, intron 18 of 19)",9,74110356,74283203,172848,1,Wdr72-201,115569,Wdr72-201;Wdr72-205,Wdr72;Wdr72,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,2,546144,ENSMUSG00000044976,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16204,cg06251571,-0.00000216,0.000000969,-2.233320213,0.026241185,loss,ns,0.00000353,0.00000165,2.146431554,0.032614397,pos,ns,0.000953024,0.000482473,1.975288835,0.049122171,pos,ns,1.308722451,-0.0000275,0.0000166,-1.657607135,0.09840836,neg,ns,0.033039931,Vsx2,Vsx2_Intron,12,84590047,84590096,84590047,84590048,50,+,CGATGTTAAACAGGTGTCAAAGGCGCCCCATATATCTGCAGATTGAAATC,"Intron (Vsx2-201/Vsx2, intron 3 of 4)",12,84569762,84595457,25696,1,Vsx2-201,20285,Vsx2-201;Vsx2-202,Vsx2;Vsx2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,20,12677,ENSMUSG00000021239,conserved gene and region,12,84590042,84590334,293,*,293,26,0.56996587,1.09265634,0.088737201,1.04E-18,CpGisland,TRUE,U2,Pr-W
13575,cg03151903,0.00000318,0.00000509,0.62431399,0.532880576,gain,ns,0.0000186,0.00000864,2.146346655,0.032621224,pos,ns,0.005453392,0.002532682,2.153208213,0.032073384,pos,ns,1.493855221,-0.000128145,0.0000871,-1.47126635,0.142233455,neg,ns,0.913922646,Hat1,Hat1_Intron,2,71419013,71419062,71419061,71419062,50,+,TCAGTCCTTGTGGAAATAGATACAATACAAACATTACAGCTGAACTCACG,"Intron (Hat1-202/Hat1, intron 4 of 10)",2,71388958,71441622,52665,1,Hat1-202,30055,Hat1-202;Hat1-201;Hat1-204,Hat1;Hat1;Hat1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,12,107435,ENSMUSG00000027018,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1404,cg04045776,0.00000511,0.0000118,0.431943254,0.666082933,gain,ns,0.0000432,0.0000201,2.146190674,0.032633771,pos,ns,0.017279955,0.005893267,2.932151974,0.003616837,pos,ns,2.441671053,-0.000567398,0.000202669,-2.799627559,0.005437035,neg,ns,0.59967077,Sulf1,Sulf1_Promoter,1,12689739,12689788,12689739,12689740,50,+,CGGTTACCATGGAAACTAATTGGAGCTAATAAGTAAAGGGACATTTTAAC,Promoter (2-3kb),1,12692277,12861192,168916,1,Sulf1-202,-2489,Sulf1-202;Sulf1-203;Sulf1-205,Sulf1;Sulf1;Sulf1,0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,5,240725,ENSMUSG00000016918,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3298,cg26100938,0.0000354,0.0000302,1.171434395,0.242323793,gain,ns,-0.000110117,0.0000513,-2.146077245,0.032642897,neg,ns,0.058482351,0.015032349,3.890433182,0.000122496,pos,ns,3.911877353,-0.000926976,0.000516961,-1.793125386,0.073927587,neg,ns,0.774369351,Srpk2,Srpk2_Intron,5,23513484,23513533,23513532,23513533,50,-,CGTTACCTTTTCTGGTGAAAAACTCCTTGGAGTATTTCCCCAACATAGCG,"Intron (Srpk2-201/Srpk2, intron 14 of 14)",5,23503264,23616534,113271,2,Srpk2-201,103001,Srpk2-201;Srpk2-204,Srpk2;Srpk2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,8,20817,ENSMUSG00000062604,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11378,cg13229442,0.0000294,0.0000168,1.753311522,0.0805369,gain,ns,0.0000612,0.0000285,2.146056824,0.032644541,pos,ns,-0.012833061,0.008350473,-1.536806497,0.12536071,neg,ns,0.901838559,0.000640762,0.000287172,2.231282381,0.026377273,pos,ns,0.393022464,Gm12244,Gm12244_Intergenic_upstream,11,57864791,57864840,57864839,57864840,50,+,CTCCAGACGCCTGTTATCTGCACACCCATCTGTGGACAAATGGCCAGCCG,Distal Intergenic,11,57880896,57881186,291,1,Gm12244-201,-16056,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25146,cg00032045,0.00000143,0.0000018,0.797440604,0.425805559,gain,ns,0.00000656,0.00000306,2.145909237,0.03265642,pos,ns,0.001712873,0.000895252,1.913286337,0.056632361,pos,ns,1.246935332,-0.0000155,0.0000308,-0.503847294,0.614726559,neg,ns,0.956886245,Ahdc1,Ahdc1_threeUTR,4,133077141,133077190,133077141,133077142,50,+,CGAAGGTGAGCCCTTTCTGCACAAAACCAGCAATTGTAAATACTTTTTAA,3' UTR,4,133011506,133077863,66358,1,Ahdc1-203,65635,Ahdc1-203;Ahdc1-204;Ahdc1-211;Ahdc1-201;Ahdc1-202,Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,49,230793,ENSMUSG00000037692,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7045,cg09782540,0.000109248,0.00000595,18.36426069,1.74E-51,gain,yes,-0.0000217,0.0000101,-2.14585522,0.032660768,neg,ns,0.015323463,0.002960864,5.175335767,0.00000041,pos,ns,6.387628871,-0.000304067,0.000101824,-2.986208769,0.003049762,neg,ns,0.205793268,Tfap2a,Tfap2a_Exon,13,40717163,40717212,40717163,40717164,50,-,CGTGTGGCTGTTGGGGTTGTTGCTGAGGTACATTTTGTCCATGGCCTTGA,"Exon (Tfap2a-201/Tfap2a, exon 7 of 7)",13,40715302,40730443,15142,2,Tfap2a-201,13231,Tfap2a-201;Tfap2a-202;Tfap2a-205;Tfap2a-203;Tfap2a-209;Tfap2a-208;Tfap2a-206;Tfap2a-204,Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,13,57,21418,ENSMUSG00000021359,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
13765,cg18147668,-0.00000432,0.00000285,-1.514003568,0.131043801,loss,ns,-0.0000104,0.00000484,-2.14578424,0.032666483,neg,ns,-0.000802782,0.001419395,-0.565580307,0.572088242,neg,ns,0.242536978,0.0000677,0.0000488,1.387648158,0.166240838,pos,ns,0.929743457,Map3k20,Map3k20_Intron,2,72427012,72427061,72427060,72427061,50,+,TGTCATGGAAGCAGCTGCACATCTCAAAGACAATATAATGCCTGCGTTCG,"Intron (Map3k20-201/Map3k20, intron 16 of 19)",2,72285637,72442610,156974,1,Map3k20-201,141375,Map3k20-201,Map3k20,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,14,18,65964,ENSMUSG00000004085,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19635,cg08705347,-0.0000125,0.00000844,-1.485371056,0.138461745,loss,ns,-0.0000308,0.0000143,-2.145672503,0.032675481,neg,ns,-0.004278726,0.004201925,-1.018277517,0.309340125,neg,ns,0.509563744,-0.00017398,0.000144504,-1.203983869,0.229514318,neg,ns,0.762647335,Gm28267,Gm28267_Intergenic_upstream,9,100210919,100210968,100210919,100210920,50,+,CGGGCAGGAGACCGGGCTGGAAAAATTGCTTATTGACATCAAAATACAGT,Distal Intergenic,9,100404495,100404759,265,1,Gm28267-201,-193527,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,29,29,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26655,cg07066150,0.0000122,0.00000744,1.642740054,0.101450628,gain,ns,0.0000271,0.0000126,2.145603144,0.032681068,pos,ns,-0.006152856,0.003704443,-1.660939406,0.097736618,neg,ns,1.009942691,0.000233321,0.000127396,1.831470214,0.06798991,pos,ns,0.791486839,Bicd1,Bicd1_Exon,6,149519018,149519067,149519066,149519067,50,+,GCCCTGACCCAGAGGCTGGAGGACTTAGAGTTTGACCATGAGCAGTCCCG,"Exon (Bicd1-202/Bicd1, exon 7 of 9)",6,149408984,149563329,154346,1,Bicd1-202,110034,Bicd1-202;Bicd1-203;Bicd1-201;Bicd1-207;Bicd1-208;Bicd1-206,Bicd1;Bicd1;Bicd1;Bicd1;Bicd1;Bicd1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,6,12121,ENSMUSG00000003452,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17660,cg07225115,0.0000242,0.0000119,2.040189394,0.042178667,gain,ns,0.0000432,0.0000201,2.145401522,0.032697313,pos,ns,0.001554513,0.005900045,0.263474783,0.792359701,pos,ns,0.101077621,0.000234324,0.000202902,1.154863468,0.249035766,pos,ns,0.157435483,Zic4,Zic4_Intron,9,91367743,91367792,91367743,91367744,50,+,CGTCTGCATATTCATTAGGTCTAATTATTTTCTAGTAAGGAAAACACAAA,"Intron (Zic4-208/Zic4, intron 1 of 2)",9,91362413,91378915,16503,1,Zic4-208,5330,Zic1-201;Zic1-202;Zic1-203;Zic4-208;Zic4-206;Zic4-207;Zic4-211;Zic4-204;Zic4-203;Zic4-210;Zic4-209;Zic4-212,Zic1;Zic1;Zic1;Zic4;Zic4;Zic4;Zic4;Zic4;Zic4;Zic4;Zic4;Zic4,0;0;-4689;0;0;0;0;0;0;-3212;0;-3558,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,55,22774,ENSMUSG00000036972,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
27923,cg01981814,-0.00000297,0.00000727,-0.408363095,0.683289049,loss,ns,0.0000265,0.0000124,2.145293369,0.032706029,pos,ns,-0.004643707,0.003618455,-1.283339895,0.200331546,neg,ns,0.698250657,0.000215902,0.000124438,1.735015576,0.083731906,pos,ns,0.853298364,Prox1,Prox1_Intergenic_upstream,1,190375256,190375305,190375256,190375257,50,-,CGCCTCTGGCTGATTCCCGCGCTGCGTTTCAAGTGTCAATCAAAAAGGAA,Distal Intergenic,1,190118035,190170714,52680,2,Prox1-202,-204591,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,13,59,19130,ENSMUSG00000010175,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22223,cg14600868,-0.0000282,0.00000655,-4.303740792,0.0000226,loss,ns,0.0000239,0.0000111,2.145163575,0.032716493,pos,ns,0.013297919,0.003257523,4.082218195,0.0000568,pos,ns,4.245540732,-0.000403437,0.000112026,-3.601278321,0.000368631,neg,ns,0.155245796,Cryba4,Cryba4_Intergenic_downstream,5,112002532,112002581,112002580,112002581,50,-,AGGTCCGGCTAGGCACATCTTCTCTTGTAAATACTGTTTCTCTCCCAACG,Distal Intergenic,5,112246494,112251162,4669,2,Cryba4-202,248630,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,8,12959,ENSMUSG00000066975,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27555,cg22792369,-0.00000859,0.0000139,-0.617188476,0.537563465,loss,ns,0.0000507,0.0000237,2.145141875,0.032718242,pos,ns,0.014079697,0.006928663,2.032094483,0.042996421,pos,ns,1.366567696,-0.000934892,0.000238276,-3.923564211,0.000107499,neg,ns,0.793027235,Mid1,Mid1_Intron,X,169890781,169890830,169890829,169890830,50,+,TTGCTTTTCTGCTTGGAAATTATGTCAATATTAGTTACATCATCCCTTCG,"Intron (Mid1-206/Mid1, intron 2 of 9)",20,169685199,169990795,305597,1,Mid1-206,205582,Mid1-206;Mid1-204;Mid1-201;Mid1-205;Mid1-202,Mid1;Mid1;Mid1;Mid1;Mid1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,8,17318,ENSMUSG00000035299,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17657,cg07668688,0.000119605,0.00000812,14.72108139,1.46E-37,gain,yes,-0.0000296,0.0000138,-2.144950466,0.032733679,neg,ns,0.013104132,0.004043785,3.240560982,0.001322617,pos,ns,2.878565789,-0.000166825,0.000139065,-1.199613271,0.231205614,neg,ns,0.108998835,Zic4,Zic4_Intron,9,91367395,91367444,91367443,91367444,50,-,TGCAGACATTTGGATTCAGTGCAAACATACAACACTCGCTTGTTTTCGCG,"Intron (Zic4-208/Zic4, intron 1 of 2)",9,91362413,91378915,16503,1,Zic4-208,4982,Zic1-201;Zic1-202;Zic1-203;Zic4-208;Zic4-206;Zic4-207;Zic4-211;Zic4-204;Zic4-203;Zic4-210;Zic4-209;Zic4-212,Zic1;Zic1;Zic1;Zic4;Zic4;Zic4;Zic4;Zic4;Zic4;Zic4;Zic4;Zic4,0;0;-4341;0;0;0;0;0;0;-3560;0;-3906,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,55,22774,ENSMUSG00000036972,mapped to different genes,9,91367412,91367502,91,*,91,9,0.516483517,1.568965517,0.098901099,0.000000407,CpGisland,TRUE,U13,Hc-P
12589,cg20072112,-0.0000395,0.0000115,-3.437955421,0.000666239,loss,ns,-0.0000419,0.0000195,-2.144553295,0.03276573,neg,ns,-0.020845503,0.00572216,-3.642943287,0.000315854,neg,ns,3.500513915,0.000500418,0.000196785,2.542972389,0.011477237,pos,ns,0.635170912,Zfp532,Zfp532_fiveUTR,18,65582188,65582237,65582188,65582189,50,-,CGAGGGTTGCCATAGCTTTTTTATGTAGGGTGACCAGAACCGGCTGAAAC,Promoter (<=1kb),18,65582233,65623687,41455,1,Zfp532-223,0,Zfp532-218;Zfp532-201;Zfp532-221;Zfp532-216;Zfp532-212;Zfp532-208;Zfp532-220;Zfp532-204;Zfp532-203;Zfp532-224;Zfp532-227;Zfp532-210;Zfp532-222;Zfp532-223;Zfp532-207;Zfp532-217;Zfp532-214;Zfp532-219;Zfp532-226;Zfp532-205;Zfp532-202;Zfp532-215;Zfp532-206;Zfp532-209,Zfp532;Zfp532;Zfp532;Zfp532;Zfp532;Zfp532;Zfp532;Zfp532;Zfp532;Zfp532;Zfp532;Zfp532;Zfp532;Zfp532;Zfp532;Zfp532;Zfp532;Zfp532;Zfp532;Zfp532;Zfp532;Zfp532;Zfp532;Zfp532,0;0;0;0;0;0;0;0;0;0;0;0;0;0;-2;-52;-57;-63;-69;-181;-289;-376;-1178;-1700,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,1,328977,ENSMUSG00000042439,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17295,cg07302051,-0.0000287,0.0000104,-2.746593748,0.006373803,loss,ns,0.000038,0.0000177,2.14446233,0.032773074,pos,ns,0.004812284,0.005196262,0.92610504,0.355111797,pos,ns,0.4496349,-0.00027247,0.000178699,-1.524741044,0.128343213,neg,ns,0.721082852,Gm5356,Gm5356_Intergenic_upstream,8,89465069,89465118,89465117,89465118,50,+,GGATTTCAGATCATCTTTTATTTCCAATTATGCTGCTGTTCACATTATCG,Distal Intergenic,8,89186946,89187560,615,2,Gm5356-201,-277509,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,23,23,384862,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7207,cg27578488,-0.0000117,0.00000393,-2.988418746,0.003028414,loss,ns,-0.0000143,0.00000667,-2.144315726,0.032784914,neg,ns,-0.004592624,0.001953852,-2.35054849,0.019372139,neg,ns,1.712822415,0.0000654,0.0000672,0.973838608,0.33089595,pos,ns,0.946550411,Gria3,Gria3_Exon,X,41654653,41654702,41654701,41654702,50,-,TCCAATATTTAACCCTGTATTTGCTGTACAGACATTTTTATAGCTCCACG,"Exon (Gria3-208/Gria3, exon 13 of 15)",20,41401128,41676585,275458,1,Gria3-202,253525,Gria3-202;Gria3-201;Gria3-208;Gria3-206;Gria3-209,Gria3;Gria3;Gria3;Gria3;Gria3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,26,53623,ENSMUSG00000001986,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19687,cg04316160,-0.0000415,0.00000425,-9.772090633,7.75E-20,loss,yes,-0.0000155,0.00000721,-2.144178322,0.032796014,neg,ns,0.009036268,0.002113288,4.275927654,0.0000254,pos,ns,4.595589964,-0.000352342,0.0000727,-4.848128361,0.00000197,neg,ns,0.858386524,Rab6a,Rab6a_Exon,7,100629841,100629890,100629841,100629842,50,+,CGATTGCAATTATGGGACACAGCAGGTCAAGAGCGGTTCAGGAGCTTGAT,"Exon (Rab6a-201/Rab6a, exon 4 of 8)",7,100607410,100641268,33859,1,Rab6a-203,22431,Gm14382-201;Rab6a-203;Rab6a-201;Rab6a-202;Rab6a-204,Gm14382;Rab6a;Rab6a;Rab6a;Rab6a,5323;0;0;0;-4458,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,19346,ENSMUSG00000030704,conserved gene and region,7,100629656,100629905,250,*,250,12,0.488,0.809716599,0.048,0.0000058,CpGisland,TRUE,NA,NRS
27228,cg18343911,-0.00000529,0.00000324,-1.630984544,0.103909071,loss,ns,0.0000118,0.00000551,2.144116596,0.032801002,pos,ns,0.003489342,0.001613457,2.162649968,0.0313325,pos,ns,1.504004947,-0.0000995,0.0000555,-1.79391383,0.073801341,neg,ns,0.922426432,Chd6,Chd6_Exon,2,161029194,161029243,161029242,161029243,50,+,TTCATCTGGGCTTGTTTATTCCTAAATCGCTTGATCTTCTGTGCGATGCG,"Exon (Chd6-201/Chd6, exon 8 of 37)",2,160946978,161109022,162045,2,Chd6-201,79779,Chd6-201;Chd6-204;Chd6-207;Chd6-210;Chd6-203,Chd6;Chd6;Chd6;Chd6;Chd6,0;0;0;0;23335,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,8,71389,ENSMUSG00000057133,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11232,cg18460977,0.0000508,0.0000183,2.766912112,0.0059989,gain,ns,0.0000668,0.0000312,2.144098751,0.032802444,pos,ns,0.02187578,0.00913092,2.395791413,0.017177237,pos,ns,1.765046694,-0.0000647,0.000314012,-0.205941681,0.836971646,neg,ns,0.565146601,Nr4a2,Nr4a2_Exon,2,57108671,57108720,57108671,57108672,50,-,CGAACGCATTGCAACCTGTGCAAGACCACCCCATTGCAAAAGATGAGTTT,"Exon (Nr4a2-201/Nr4a2, exon 7 of 8)",2,57106830,57115038,8209,2,Nr4a2-201,6318,Nr4a2-201;Nr4a2-203;Nr4a2-206;Nr4a2-202;Nr4a2-205;Nr4a2-204,Nr4a2;Nr4a2;Nr4a2;Nr4a2;Nr4a2;Nr4a2,0;0;0;0;0;5653,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,25,18227,ENSMUSG00000026826,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
21506,cg15411900,-0.000000224,0.00000791,-0.02825493,0.977477007,loss,ns,-0.0000288,0.0000134,-2.143933797,0.032815776,neg,ns,-0.003281096,0.003937257,-0.833345681,0.405291408,neg,ns,0.392232602,-0.000309572,0.000135402,-2.286319724,0.022909774,neg,ns,0.66334656,Gm9864,Gm9864_Intergenic_upstream,2,108023362,108023411,108023362,108023363,50,-,CGCAAGTGAAACTGAAAGGTCGAATGTGTGACTCACATCTATTGACAGAT,Distal Intergenic,2,107595630,107600539,4910,2,Gm9864-201,-422872,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12087,cg07264916,0.000170509,0.00000879,19.3892552,2.10E-55,gain,yes,0.000032,0.0000149,2.143619989,0.032841152,pos,ns,0.004362466,0.004376858,0.996711941,0.319681706,pos,ns,0.495282216,0.00068062,0.00015052,4.521796649,0.00000874,pos,ns,0.622710444,Nrp2,Nrp2_Exon,1,62795737,62795786,62795785,62795786,50,-,CACAGTGGACACGGTGCCCATGCAGCCCATCCCAGCCTACTGGTATTACG,"Exon (Nrp2-201/Nrp2, exon 16 of 16)",1,62703285,62818695,115411,1,Nrp2-203,92452,Nrp2-203;Nrp2-204;Nrp2-201;Nrp2-205;Nrp2-202;Nrp2-206,Nrp2;Nrp2;Nrp2;Nrp2;Nrp2;Nrp2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,6,18187,ENSMUSG00000025969,conserved gene and region,1,62795721,62796077,357,*,357,25,0.613445378,0.766225962,0.070028011,1.81E-15,CpGisland,TRUE,NA,NRS
18434,cg01268650,-0.000011,0.00000453,-2.433636901,0.015512721,loss,ns,-0.0000165,0.0000077,-2.143560501,0.032845964,neg,ns,-0.001973646,0.002256533,-0.874636548,0.382448799,neg,ns,0.417426698,-0.0000215,0.0000776,-0.277398684,0.781658886,neg,ns,0.906638632,Gm44603,Gm44603_Intergenic_downstream,7,95639948,95639997,95639996,95639997,50,+,AGTTTATAGAATGCATTCCCAAAGGTCTGACAACAAAACAGAATAAATCG,Distal Intergenic,7,95474946,95475312,367,1,Gm44603-201,165002,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3804,cg18116132,0.0000197,0.00000504,3.908227944,0.000114211,gain,ns,-0.0000183,0.00000856,-2.14345506,0.032854495,neg,ns,-0.002798082,0.002508049,-1.115640717,0.265440022,neg,ns,0.576033595,-0.000134917,0.0000863,-1.564226848,0.118784522,neg,ns,0.899944155,Celf4,Celf4_threeUTR,18,25481721,25481770,25481769,25481770,50,-,CATGACGCCATCATGTCACACTGTGAACTTTGAGTTGATTTGAACTTACG,3' UTR,18,25477632,25753983,276352,2,Celf4-202,272213,Celf4-202;Celf4-201;Celf4-203;Celf4-207;Celf4-206;Celf4-208;Celf4-204,Celf4;Celf4;Celf4;Celf4;Celf4;Celf4;Celf4,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,59,108013,ENSMUSG00000024268,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23827,cg12373771,0.000129933,0.00000614,21.14968328,4.40E-62,gain,yes,-0.0000224,0.0000104,-2.143375484,0.032860935,neg,ns,0.004866599,0.003057675,1.591601205,0.112493511,pos,ns,0.94887253,-0.00000556,0.000105153,-0.052862574,0.957875452,neg,ns,0.165928837,Tmem121b,Tmem121b_Exon,6,120493082,120493131,120493130,120493131,50,-,AGCACCAGTACAGGTCGGTGACGGCGATGAGGTACAGGTCCAGCAGGCCG,Promoter (<=1kb),6,120488939,120493807,4869,2,Tmem121b-201,676,Tmem121b-201,Tmem121b,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,94047,ENSMUSG00000094626,conserved gene and region,6,120493130,120494085,956,*,956,120,0.767782427,0.865942029,0.125523013,4.48E-104,CpGisland,TRUE,U3,Pr-B
10592,cg15514262,0.000000412,0.00000187,0.220075299,0.825957366,gain,ns,0.00000681,0.00000318,2.143060887,0.032886405,pos,ns,0.000372465,0.000931551,0.39983294,0.689554921,pos,ns,0.161431138,0.0000279,0.000032,0.871409957,0.384204702,pos,ns,0.962043813,Acin1,Acin1_Exon,14,54646574,54646623,54646574,54646575,50,+,CGCCAGGGGTTTGATGTCGGGGATGAGGCTCTGGGACACAGATACCCCCC,"Exon (Acin1-208/Acin1, exon 5 of 12)",14,54642161,54653616,11456,2,Acin1-208,6993,Acin1-208;Acin1-216;Acin1-202;Acin1-201;Acin1-219;Acin1-218;Acin1-221;Acin1-224;Acin1-203;Acin1-223;Acin1-215;Acin1-222;Acin1-205;Acin1-211;Acin1-225;Acin1-207;Acin1-204;Acin1-226;Acin1-213;Acin1-214;Acin1-209;Acin1-220;Gm17606-201,Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Gm17606,0;0;0;0;0;0;0;0;0;-2038;-2364;-708;0;-527;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,22,56215,ENSMUSG00000022185,conserved gene and region,14,54646394,54646631,238,*,238,15,0.613445378,0.682730924,0.06302521,7.36E-09,CpGisland,TRUE,U10,Tr-S
17674,cg14623239,-0.00000337,0.000000793,-4.253041039,0.000028,loss,ns,0.00000289,0.00000135,2.142392074,0.032940609,pos,ns,0.000667366,0.000394724,1.690716723,0.091896045,pos,ns,1.036703177,0.0000169,0.0000136,1.245212635,0.21399402,pos,ns,0.026584774,Ssbp2,Ssbp2_Exon,13,91371360,91371409,91371408,91371409,50,+,CCGGGGTCAAGAAACAGCTGTTGAAGTTAATGTTTCTTCCTCCCACTTCG,"Exon (A830009L08Rik-201/A830009L08Rik-201, exon 3 of 3)",13,91460283,91688866,228584,1,Ssbp2-209,-88874,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,18,66970,ENSMUSG00000003992,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U4,Pr-F
139,cg25995968,0.0000503,0.0000139,3.620519897,0.000343304,gain,ns,-0.0000506,0.0000236,-2.142313517,0.032946981,neg,ns,0.030928113,0.006915409,4.472347745,0.0000109,pos,ns,4.963752629,-0.000788541,0.00023782,-3.315700558,0.001022675,neg,ns,0.715817875,Kdm2a,Kdm2a_Exon,19,4328942,4328991,4328990,4328991,50,+,AGATCACTCACTGCCAAGCACTGTCGGAGGACACAGGACTGCTTCATGCG,"Exon (Kdm2a-201/Kdm2a, exon 14 of 21)",19,4314419,4398285,83867,2,Kdm2a-201,69294,Kdm2a-201;Kdm2a-202;Kdm2a-213;Kdm2a-214;Kdm2a-212;Kdm2a-210,Kdm2a;Kdm2a;Kdm2a;Kdm2a;Kdm2a;Kdm2a,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,21,30,225876,ENSMUSG00000054611,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16152,cg12956396,0.0000215,0.00000691,3.117243201,0.001996623,gain,ns,0.0000251,0.0000117,2.141858959,0.03298387,pos,ns,0.006232397,0.003439281,1.812122172,0.07093475,pos,ns,1.14914096,-0.0000635,0.000118277,-0.536884768,0.59173232,neg,ns,0.893145714,Pcdh17,Pcdh17_Exon,14,84532937,84532986,84532985,84532986,50,+,TGGATGCCACAGTTCCCTGCAGCCAATCAGGCTGAAAATGCAGATTACCG,"Exon (Pcdh17-201/Pcdh17, exon 4 of 4)",14,84443563,84539002,95440,1,Pcdh17-201,89374,Pcdh17-201,Pcdh17,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,13,219228,ENSMUSG00000035566,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5706,cg01899622,0.000125278,0.0000154,8.154227529,8.81E-15,gain,yes,-0.0000559,0.0000261,-2.141695437,0.03299715,neg,ns,0.032710667,0.007646629,4.277788948,0.0000252,pos,ns,4.599016524,-0.001001507,0.000262967,-3.808488643,0.000168553,neg,ns,0.286158525,Mapkap1,Mapkap1_Intron,2,34602483,34602532,34602483,34602484,50,-,CGACATTTTGATTGATGTTGGTACACGAGTCAGTCTTTCCCATTGAATTC,"Intron (Mapkap1-204/Mapkap1, intron 9 of 10)",2,34406862,34623475,216614,1,Mapkap1-204,195621,Mapkap1-204;Mapkap1-202;Mapkap1-201;Mapkap1-209;Mapkap1-203,Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,59,227743,ENSMUSG00000038696,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11773,cg10751387,0.0000104,0.0000174,0.597273005,0.550761121,gain,ns,-0.0000633,0.0000296,-2.141548475,0.033009088,neg,ns,0.010983704,0.008665556,1.267513007,0.205923185,pos,ns,0.686294752,-0.000739822,0.000298008,-2.482558029,0.013573294,neg,ns,0.336479635,Mbnl1,Mbnl1_Exon,3,60529727,60529776,60529775,60529776,50,-,GAATGTAAATTTGCACATCCTTCGAAAAGCTGCCAAGTTGAAAATGGACG,"Exon (Mbnl1-221/Mbnl1, exon 2 of 4)",3,60472830,60595764,122935,1,Mbnl1-222,56897,Mbnl1-222;Mbnl1-221;Mbnl1-216;Mbnl1-220;Mbnl1-211;Mbnl1-204;Mbnl1-201;Mbnl1-209;Mbnl1-202;Mbnl1-225;Mbnl1-217;Mbnl1-203;Mbnl1-218;Mbnl1-208;Mbnl1-219;Mbnl1-214;Mbnl1-207;Mbnl1-205;Mbnl1-212,Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,19,36,56758,ENSMUSG00000027763,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27850,cg12097135,-0.00000849,0.0000045,-1.885583543,0.060285995,loss,ns,0.0000164,0.00000765,2.141339698,0.033026054,pos,ns,0.005758552,0.002240183,2.570572524,0.01061962,pos,ns,1.973891016,-0.000206566,0.000077,-2.681295089,0.007726426,neg,ns,0.915270432,Ush2a,Ush2a_Intron,1,188505443,188505492,188505491,188505492,50,+,CTGCAGAATCTATGACAGTAATTAGCATAGCCTGAAAACTCATTAATACG,"Intron (Ush2a-201/Ush2a, intron 20 of 70)",1,188263034,188965041,702008,1,Ush2a-201,242409,Ush2a-201,Ush2a,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,33,36,22283,ENSMUSG00000026609,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12145,cg21913180,-0.000000507,0.00000304,-0.16701051,0.867470665,loss,ns,0.000011,0.00000516,2.140872054,0.033064085,pos,ns,0.002062056,0.001511696,1.364067814,0.173535757,pos,ns,0.760611026,0.0000158,0.000052,0.304293494,0.761108464,pos,ns,0.949554556,Zfp618,Zfp618_Exon,4,63132883,63132932,63132931,63132932,50,-,TGCTCAGCCTGTGCCTTGAACTCGGTGGTGCAGAGCGTGCTGAGCAAGCG,"Exon (Zfp618-203/Zfp618, exon 15 of 15)",4,62965573,63139708,174136,1,Zfp618-203,167310,Zfp618-203;Zfp618-202,Zfp618;Zfp618,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,12,72701,ENSMUSG00000028358,conserved gene and region,4,63132931,63133130,200,*,200,14,0.625,0.717213115,0.07,6.89E-09,CpGisland,TRUE,U11,Tr-P
14568,cg26622384,0.000057,0.0000104,5.48786619,8.47E-08,gain,yes,0.0000378,0.0000176,2.14086904,0.03306433,pos,ns,0.017731161,0.005167939,3.430992633,0.000682928,pos,ns,3.165625394,-0.00034645,0.000177725,-1.949359289,0.052154083,neg,ns,0.537586107,Scrt1,Scrt1_threeUTR,15,76516466,76516515,76516466,76516467,50,-,CGCACCTCGGGCCCTACTTGTAGAATCAGTACAAAATAGGTGCTACCTAA,3' UTR,15,76516203,76522499,6297,2,Scrt1-201,5984,Dgat1-201;Dgat1-210;Dgat1-212;Dgat1-211;Dgat1-209;Scrt1-201;Scrt1-202,Dgat1;Dgat1;Dgat1;Dgat1;Dgat1;Scrt1;Scrt1,-4515;-4786;-4792;-4513;-4640;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,6,170729,ENSMUSG00000048385,conserved gene and region,15,76516237,76516474,238,*,238,25,0.726890756,0.812175812,0.105042017,6.43E-20,CpGisland,TRUE,U13,Hc-P
26509,cg04744780,0.00000762,0.00000708,1.076208959,0.28267065,gain,ns,-0.0000258,0.000012,-2.140848387,0.03306601,neg,ns,-0.010976957,0.003525917,-3.113220221,0.002023195,neg,ns,2.693962358,0.000309211,0.000121256,2.550068594,0.011251032,pos,ns,0.763643905,Casz1,Casz1_Intron,4,148857962,148858011,148857962,148857963,50,-,CGGAAACCAATTGAGCAGGACAAGGTGCCCAGCCAGCAGGTTGTGGGAAC,"Intron (Casz1-201/Casz1, intron 2 of 15)",4,148804429,148945129,140701,1,Casz1-201,53533,Casz1-201;Casz1-202,Casz1;Casz1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,94,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6025,cg15562075,-0.000000577,0.00000192,-0.300356045,0.764106909,loss,ns,-0.00000699,0.00000326,-2.140496496,0.033094654,neg,ns,-0.002136414,0.000956449,-2.23369288,0.026216364,neg,ns,1.581427535,0.000039,0.0000329,1.1863769,0.236381929,pos,ns,0.975852055,Cxxc5,Cxxc5_threeUTR,18,35860737,35860786,35860785,35860786,50,+,ATGTCACTGCTCGTGTGGTCTCCAGCAAGGGATTCGGGCGAAGACAAACG,3' UTR,18,35829788,35861688,31901,1,Cxxc5-201,30949,Cxxc5-202;Cxxc5-201;Cxxc5-206;Cxxc5-203;Cxxc5-204;Cxxc5-205,Cxxc5;Cxxc5;Cxxc5;Cxxc5;Cxxc5;Cxxc5,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,7,49,67393,ENSMUSG00000046668,conserved gene and region,18,35860501,35860796,296,*,296,26,0.628378378,0.896447292,0.087837838,1.36E-18,CpGisland,TRUE,U10,Tr-S
7424,cg24009935,-0.000015,0.00000479,-3.126524531,0.001936543,loss,ns,0.0000174,0.00000813,2.140315653,0.033109382,pos,ns,0.004391629,0.002382601,1.84320819,0.066253107,pos,ns,1.178793753,-0.0001278,0.0000819,-1.559732568,0.119843363,neg,ns,0.922329826,Opn5,Opn5_Exon,17,42596691,42596740,42596691,42596692,50,-,CGGTGACAAAAGCAAGAGATGATGGTGAACGGCTTGCCTACAACTAGAGC,"Exon (Opn5-201/Opn5, exon 3 of 7)",17,42556783,42611395,54613,2,Opn5-201,14655,Opn5-201,Opn5,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,353344,ENSMUSG00000043972,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14236,cg18192799,0.0000498,0.0000055,9.045522008,1.67E-17,gain,yes,-0.00002,0.00000934,-2.140219017,0.033117255,neg,ns,0.008322128,0.002737669,3.03985862,0.002568632,pos,ns,2.590298077,-0.00033168,0.0000941,-3.522955403,0.000490969,neg,ns,0.112666819,Onecut1,Onecut1_Exon,9,74863157,74863206,74863205,74863206,50,-,GCAGATGGAAGAGATCAATACCAAAGAGGTGGCGCAGCGTATCACCACCG,"Exon (Onecut1-201/Onecut1, exon 1 of 2)",9,74861921,74891781,29861,1,Onecut1-201,1236,Onecut1-201;Onecut1-202,Onecut1;Onecut1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,16,28,15379,ENSMUSG00000043013,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
25826,cg20913114,0.0000996,0.0000143,6.964722483,1.98E-11,gain,yes,0.000052,0.0000243,2.139965584,0.033137909,pos,ns,0.015606007,0.007114769,2.193466457,0.029016131,pos,ns,1.537360503,0.000116352,0.000244676,0.475533989,0.634741317,pos,ns,0.279006541,Uncx,Uncx_Intergenic_downstream,5,139585470,139585519,139585470,139585471,50,+,CGTCACCTCCGACCACAGACATTGTTTCCGACAGTTCTCAGGAGCAGTGT,Distal Intergenic,5,139543898,139545268,1371,1,Uncx-202,41572,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,59,88,22255,ENSMUSG00000029546,conserved gene and region,5,139585354,139585726,373,*,373,27,0.616621984,0.761512287,0.072386059,4.94E-17,CpGisland,TRUE,U13,Hc-P
18122,cg06386724,-0.00000578,0.00000174,-3.322494842,0.000998934,loss,ns,0.00000632,0.00000296,2.139752301,0.0331553,pos,ns,0.00171639,0.000865728,1.982597599,0.048294911,pos,ns,1.316098627,-0.0000499,0.0000298,-1.677205595,0.09451025,neg,ns,0.05670722,Spag9,Spag9_Exon,11,93996468,93996517,93996516,93996517,50,-,GCAGGACCAGGAGCACCAGGTGGAGCTGGAGCTGCTGCGGGACGACAACG,Promoter (<=1kb),11,93996091,94043628,47538,1,Spag9-209,377,Spag9-209;Spag9-208;Spag9-202,Spag9;Spag9;Spag9,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,6,70834,ENSMUSG00000020859,conserved gene and region,11,93996438,93996842,405,*,405,36,0.711111111,0.735027223,0.088888889,9.82E-26,CpGisland,TRUE,U1,Pr-A
4626,cg25310719,-0.0000061,0.00000212,-2.881028461,0.004240204,loss,ns,0.00000769,0.0000036,2.139716846,0.033158192,pos,ns,0.0021612,0.00105354,2.051369742,0.041070991,pos,ns,1.386464814,-0.00000209,0.0000362,-0.057734175,0.953997567,neg,ns,0.047468163,E2f3,E2f3_fiveUTR,13,29985973,29986022,29985973,29985974,50,-,CGGCCGGCAGCTGAAAAATGGCTCCAGGAAGCTGCTGCTGACAATGAATG,Promoter (<=1kb),13,29906575,29986063,79489,2,E2f3-201,41,E2f3-203;E2f3-204;E2f3-201;E2f3-202,E2f3;E2f3;E2f3;E2f3,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,10,13557,ENSMUSG00000016477,conserved gene and region,13,29985584,29985978,395,*,395,35,0.612658228,0.948411882,0.088607595,5.51E-25,CpGisland,TRUE,U1,Pr-A
1294,cg18775299,-0.000000735,0.00000153,-0.479774811,0.631725846,loss,ns,0.00000557,0.0000026,2.139666158,0.033162326,pos,ns,0.00136783,0.000762474,1.793935271,0.07379791,pos,ns,1.131955939,-0.0000388,0.0000262,-1.478862611,0.140192421,neg,ns,0.970800399,A230072I06Rik,A230072I06Rik_Intergenic_downstream,8,12328169,12328218,12328217,12328218,50,-,AACTTTTATTTGCAGTGTAATGAGATTATGCTTATTAGGCCAAGGCCTCG,Distal Intergenic,8,12278819,12280657,1839,1,A230072I06Rik-201,49399,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,619290,ENSMUSG00000074473,mapped to different genes,8,12328217,12328308,92,*,92,8,0.576086957,1.079178886,0.086956522,0.00000628,CpGisland,TRUE,U11,Tr-P
20456,cg19483831,0.0000228,0.00000517,4.415794501,0.0000139,gain,ns,0.0000188,0.00000879,2.139635067,0.033164862,pos,ns,0.008877706,0.002573776,3.449293139,0.000639878,pos,ns,3.193903042,-0.000173159,0.0000885,-1.956333939,0.051323473,neg,ns,0.131093124,Hoxc4,Hoxc4_Intergenic_downstream,15,103060584,103060633,103060584,103060585,50,+,CGTGGTTTCCGGTGTGTATTAACTTATAGTTAAATTCTGGAGGAAAGGGC,Distal Intergenic,15,103034395,103036852,2458,1,Hoxc4-201,26189,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,32,91,15423,ENSMUSG00000075394,mapped to different genes,15,103060516,103060594,79,*,79,8,0.506329114,1.58,0.101265823,0.00000199,CpGisland,TRUE,NA,NRS
13792,cg06108355,-0.00000146,0.00000476,-0.307635463,0.758566311,loss,ns,0.0000173,0.00000809,2.139621986,0.033165929,pos,ns,0.005364741,0.002369553,2.264030646,0.024262963,pos,ns,1.61505616,-0.000133392,0.0000815,-1.636935932,0.10265857,neg,ns,0.911545188,Gm6995,Gm6995_Intergenic_upstream,18,72725158,72725207,72725158,72725159,50,-,CGTTCAGCCTTTTATGAACACCTGTGTCTAAAGCCCACAAATAATTAGCT,Distal Intergenic,18,72426526,72427108,583,2,Gm6995-201,-298099,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,2,629684,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22905,cg19067187,0.0000174,0.0000147,1.183409408,0.237553633,gain,ns,0.0000535,0.000025,2.139567886,0.033170343,pos,ns,0.009160622,0.007322452,1.251032039,0.21186611,pos,ns,0.673938507,-0.000236306,0.000251819,-0.938396431,0.348771263,neg,ns,0.58437564,Gm47893,Gm47893_Promoter,13,116087534,116087583,116087582,116087583,50,-,TGTCAAGTAATTAGCCAACCTAATTAAATTTTTGTAGCACTAATCAAACG,Promoter (8-9kb),13,116096035,116096300,266,1,Gm47893-201,-8501,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22399,cg12003257,0.00000295,0.00000306,0.963892512,0.33585111,gain,ns,0.0000111,0.0000052,2.139370938,0.033186415,pos,ns,0.004397733,0.001522856,2.88781975,0.004152105,pos,ns,2.381731665,-0.000110515,0.0000524,-2.110228569,0.035639586,neg,ns,0.936499089,Sdk2,Sdk2_Intergenic_upstream,11,114202919,114202968,114202967,114202968,50,-,ACATATTTTACTAGGCTGGGATTTACGGATTAGCCTGTAATACTTAGGCG,Distal Intergenic,11,113865600,114067046,201447,2,Sdk2-205,-135922,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,11,237979,ENSMUSG00000041592,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7650,cg25991320,0.000131372,0.00000986,13.31870994,2.59E-32,gain,yes,-0.0000358,0.0000168,-2.139314041,0.033191059,neg,ns,0.042331935,0.00490929,8.622822592,3.43E-16,pos,yes,15.46514017,-0.00117862,0.00016883,-6.981100785,1.79E-11,neg,yes,0.783498843,Zbtb20,Zbtb20_Intron,16,43576252,43576301,43576300,43576301,50,-,ACCTGTTGGACTGAAAACACAGCATACTAATCATAACACCATATTCTGCG,"Intron (Zbtb20-217/Zbtb20, intron 9 of 9)",16,42907645,43577725,670081,1,Zbtb20-217,668607,Zbtb20-217;Zbtb20-204;Zbtb20-215;Zbtb20-201;Zbtb20-203;Zbtb20-213;Zbtb20-219;Zbtb20-216;Zbtb20-208;Zbtb20-207;Zbtb20-220;Zbtb20-206;Zbtb20-202;Zbtb20-205,Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,98,56490,ENSMUSG00000022708,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16681,cg23795066,0.000000945,0.00000681,0.13881426,0.889687057,gain,ns,-0.0000247,0.0000116,-2.139282417,0.033193641,neg,ns,-0.004647534,0.003388602,-1.371519573,0.17120492,neg,ns,0.76648376,-0.0000161,0.000116534,-0.138209632,0.890164475,neg,ns,0.904574302,Adamtsl1,Adamtsl1_Intron,4,86058428,86058477,86058476,86058477,50,+,CCTTCTTTCCATGAGCTCAAAAATAAATGACTAAATCTCCCCAATTCCCG,"Intron (Adamtsl1-212/Adamtsl1, intron 2 of 3)",4,85514172,86110862,596691,1,Adamtsl1-212,544256,Adamtsl1-212;Adamtsl1-206;Adamtsl1-203;Adamtsl1-201;Adamtsl1-209;Adamtsl1-204;Adamtsl1-211,Adamtsl1;Adamtsl1;Adamtsl1;Adamtsl1;Adamtsl1;Adamtsl1;Adamtsl1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,10,77739,ENSMUSG00000066113,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7934,cg04276865,0.000084,0.00000573,14.6538722,2.62E-37,gain,yes,-0.0000208,0.00000973,-2.138970399,0.033219122,neg,ns,0.007538726,0.002851394,2.643873473,0.008613288,pos,ns,2.06483103,-0.0000572,0.0000981,-0.58356178,0.559939509,neg,ns,0.137412701,Hif1an,Hif1an_Intron,19,44640426,44640475,44640474,44640475,50,+,ACCCAGCCTTGTAAATAAATACTAAATATATATGAACAGAGACGACAGCG,"Intron (Gm35460-201/Gm35460-201, intron 5 of 6)",19,44562850,44576274,13425,1,Hif1an-201,77576,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,31,319594,ENSMUSG00000036450,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
9598,cg13158045,-0.000000786,0.00000235,-0.334403355,0.738301334,loss,ns,-0.00000854,0.00000399,-2.138548822,0.033253577,neg,ns,-0.001902606,0.001169581,-1.626741307,0.104808061,neg,ns,0.979605315,0.0000519,0.0000402,1.28920229,0.198288886,pos,ns,0.909301963,Mocs1,Mocs1_threeUTR,17,49452813,49452862,49452861,49452862,50,+,AGATGAAGAACCGGCCCATGATCCTCATCGGTGGGTGACCCATCAGTACG,3' UTR,17,49428364,49455432,27069,1,Mocs1-201,24449,Daam2-203;Mocs1-201;Mocs1-203;Mocs1-204;Mocs1-207;Mocs1-205,Daam2;Mocs1;Mocs1;Mocs1;Mocs1;Mocs1,111475;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,2,56738,ENSMUSG00000064120,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18025,cg15652120,0.0000247,0.00000314,7.856330936,6.55E-14,gain,yes,-0.0000114,0.00000534,-2.138479107,0.033259277,neg,ns,-0.000460521,0.001564816,-0.294297463,0.768727573,neg,ns,0.114227541,0.000049,0.0000538,0.909814227,0.363627324,pos,ns,0.096327222,Elk3,Elk3_fiveUTR,10,93311004,93311053,93311052,93311053,50,+,ACTGCATTATTCCCCAGGCGGTGTGCAGTCTGTGTAAACAGGCTTTTCCG,Promoter (<=1kb),10,93247414,93311135,63722,2,Elk3-201,82,Elk3-201;Elk3-202;Elk3-204;Elk3-203,Elk3;Elk3;Elk3;Elk3,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,7,13713,ENSMUSG00000008398,conserved gene and region,10,93310984,93311348,365,*,365,44,0.739726027,0.900981767,0.120547945,1.29E-37,CpGisland,TRUE,NA,NRS
26099,cg21371457,-0.00000402,0.00000874,-0.459936522,0.645884195,loss,ns,0.0000317,0.0000148,2.138326619,0.033271749,pos,ns,0.003214346,0.0043492,0.73906609,0.46042609,pos,ns,0.336840075,-0.000113313,0.000149569,-0.757597881,0.449267234,neg,ns,0.867832548,Dcx,Dcx_Exon,X,143875748,143875797,143875796,143875797,50,+,CACTCACCGTCTTGGTCGTTACCTGAGTCAGCTGGAGACTTGCTTCGGCG,"Exon (Dcx-201/Dcx, exon 5 of 7)",20,143855842,143933311,77470,2,Dcx-201,57514,Dcx-201;Dcx-203;Dcx-202;Dcx-204;Dcx-206;Dcx-205,Dcx;Dcx;Dcx;Dcx;Dcx;Dcx,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,8,13193,ENSMUSG00000031285,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14403,cg01620430,0.0000198,0.00000708,2.802207066,0.005394831,gain,ns,0.0000257,0.000012,2.138031302,0.033295914,pos,ns,0.010188019,0.003523659,2.891318329,0.004107374,pos,ns,2.386435698,-0.000155922,0.000121178,-1.286711379,0.199154927,neg,ns,0.293421701,Asic4,Asic4_Intron,1,75458047,75458096,75458047,75458048,50,-,CGGTGACTAAGCGTGGACAGGATAATAGCTTACAAATGTGTGGAAGGTGT,"Intron (Asic4-202/Asic4, intron 1 of 8)",1,75450436,75474340,23905,1,Asic4-202,7611,Asic4-202;Asic4-201,Asic4;Asic4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,11,241118,ENSMUSG00000033007,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16735,cg18252451,0.0000119,0.00000381,3.119233412,0.001983597,gain,ns,-0.0000139,0.00000648,-2.137901094,0.033306574,neg,ns,-0.001277711,0.001898274,-0.673091111,0.501390788,neg,ns,0.299823649,-0.0000319,0.0000653,-0.488268112,0.625705133,neg,ns,0.871096447,Med13,Med13_Exon,11,86355315,86355364,86355363,86355364,50,+,TCACCCCACCAAAATATCCACAATTCTCTTCTTCCAGGTCTTTGATCTCG,"Exon (Med13-201/Med13, exon 2 of 30)",11,86267033,86357602,90570,2,Med13-201,2238,Med13-201,Med13,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,12,327987,ENSMUSG00000034297,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13896,cg02474118,0.000134835,0.00000915,14.73443441,1.30E-37,gain,yes,-0.0000332,0.0000155,-2.13708708,0.03337328,neg,ns,0.002609171,0.004554568,0.572869001,0.567148669,pos,ns,0.246303083,0.000124746,0.000156631,0.796431782,0.426390604,pos,ns,0.773115787,Sp9,Sp9_threeUTR,2,73275456,73275505,73275456,73275457,50,+,CGTAAGTTAAGGTCATCTAAAGAAATTAAATGCGTTTATCTGTATCAAGA,3' UTR,2,73271925,73277471,5547,1,Sp9-201,3531,Sp9-201;Sp9-202,Sp9;Sp9,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,10,21,381373,ENSMUSG00000068859,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
11057,cg24573918,-0.0000245,0.0000138,-1.780307121,0.076005056,loss,ns,0.0000499,0.0000234,2.137071913,0.033374524,pos,ns,0.010032612,0.006846612,1.465339656,0.143841758,pos,ns,0.842115018,-0.000463736,0.000235454,-1.969535302,0.049781775,neg,ns,0.667098947,Gm18027,Gm18027_Intergenic_upstream,12,56471359,56471408,56471407,56471408,50,+,CATCGCTAGCACAGGAGCAAAATGTGTAATTATTGGCCATCATTGGGGCG,Distal Intergenic,12,56409939,56410557,619,2,Gm18027-201,-60802,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,8,100416309,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2936,cg23562681,-0.00000507,0.00000144,-3.521915857,0.000492823,loss,ns,0.00000522,0.00000244,2.137054413,0.033375959,pos,ns,0.001837211,0.000716167,2.565339774,0.010777677,pos,ns,1.967474823,-0.000061,0.0000246,-2.47539683,0.013843025,neg,ns,0.959906075,Ehbp1,Ehbp1_Intron,11,22078836,22078885,22078884,22078885,50,+,TAGCTAGTGGAGTAAGCTTATTGAGAAGTGTCACATCACTAAGTCGTGCG,"Intron (Ehbp1-201/Ehbp1, intron 14 of 23)",11,22005828,22285838,280011,2,Ehbp1-201,206953,Ehbp1-201;Ehbp1-202;Ehbp1-207,Ehbp1;Ehbp1;Ehbp1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,34,45,216565,ENSMUSG00000042302,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1773,cg23352003,0.0000177,0.00000382,4.637826528,0.0000052,gain,ns,-0.0000139,0.00000649,-2.136495995,0.03342179,neg,ns,-0.004552152,0.001902037,-2.393303304,0.01729199,neg,ns,1.762155029,0.000177266,0.0000654,2.710041419,0.007101953,pos,ns,0.075573927,Kctd1,Kctd1_Promoter,18,15151237,15151286,15151237,15151238,50,+,CGTAAAAGCGAGTTGCGCCCAAAGTCCCAGCCATACCCTCCTTAGCAAAT,Promoter (<=1kb),18,14968685,15151446,182762,2,Kctd1-201,160,Kctd1-201,Kctd1,0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,6,24,106931,ENSMUSG00000036225,mapped to different genes,18,15150796,15151253,458,*,458,65,0.744541485,1.024784854,0.141921397,1.05E-60,CpGisland,TRUE,U3,Pr-B
25839,cg11040386,0.0000129,0.00000448,2.886638544,0.004167307,gain,ns,-0.0000163,0.00000761,-2.136141553,0.033450907,neg,ns,-0.003933194,0.002229884,-1.763855678,0.078741237,neg,ns,1.103797767,-0.0000467,0.0000767,-0.60856393,0.543259169,neg,ns,0.846325724,Gm21969,Gm21969_Exon,4,139607697,139607746,139607697,139607698,50,+,CGGCTCCATGAACATCACCGATGAGATGAAGCGCATGTTTAACCAGCTGT,"Exon (Iffo2-202/Iffo2, exon 8 of 12)",4,139603186,139662691,59506,1,Gm21969-201,4511,Gm21969-201;Iffo2-202;Iffo2-201;Iffo2-203,Gm21969;Iffo2;Iffo2;Iffo2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8366,cg14862177,-0.00000234,0.00000126,-1.862184051,0.063523136,loss,ns,-0.00000456,0.00000214,-2.135664427,0.033490138,neg,ns,-0.001242096,0.000625954,-1.984324092,0.04810122,neg,ns,1.317843904,0.0000168,0.0000215,0.78098387,0.435407964,pos,ns,0.017691128,Prr12,Prr12_Exon,7,45052842,45052891,45052890,45052891,50,+,GCGGGTCCCCGAAGCCGGCGCTGGGGTAGTTCCTGTCCATGAATTGGCCG,Promoter (<=1kb),7,45027563,45052881,25319,2,Prr12-201,0,Prr12-201;Prrg2-208;Prrg2-201;Prrg2-210;Prrg2-204;Prrg2-211;Prrg2-207;Prrg2-209;Prrg2-203;Prrg2-206;Prrg2-205;Prrg2-202,Prr12;Prrg2;Prrg2;Prrg2;Prrg2;Prrg2;Prrg2;Prrg2;Prrg2;Prrg2;Prrg2;Prrg2,0;9786;8761;1989;8814;8815;8767;9786;9513;8785;9456;9512,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,233210,ENSMUSG00000046574,conserved gene but different region,7,45052804,45052893,90,*,90,12,0.7,1.102040816,0.133333333,4.94E-11,CpGisland,TRUE,U1,Pr-A
18158,cg14059420,0.0000124,0.0000017,7.284573357,2.69E-12,gain,yes,-0.00000616,0.00000288,-2.135658574,0.033490619,neg,ns,0.001401125,0.000844694,1.658736587,0.098180264,pos,ns,1.007975805,-0.00000393,0.000029,-0.135218049,0.892527233,neg,ns,0.014475989,Hsd17b12,Hsd17b12_Intron,2,94243829,94243878,94243877,94243878,50,-,CGCAGCCAGCGCGCATTACTCACTTTTTGCAGTCACGACTTGGGAATCCG,"Intron (Mir670hg-205/Mir670hg-205, intron 2 of 5)",2,94032689,94157964,125276,2,Hsd17b12-201,-85914,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,14,19,56348,ENSMUSG00000027195,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
1948,cg06206751,-0.00000128,0.00000354,-0.362410238,0.717292433,loss,ns,0.0000129,0.00000602,2.135509405,0.033502893,pos,ns,0.001224884,0.001763262,0.694669453,0.487782781,pos,ns,0.311773534,-0.0000835,0.0000606,-1.376909044,0.16953388,neg,ns,0.913917824,Hgf,Hgf_Exon,5,16572493,16572542,16572541,16572542,50,-,TTTTTGCCTTCGAGCTATCGGGGTAAAGACCTACAGGAAAACTACTGTCG,"Exon (Hgf-202/Hgf, exon 6 of 6)",5,16553495,16573434,19940,1,Hgf-202,18998,Hgf-202;Hgf-204;Hgf-206;Hgf-205;Hgf-201;Hgf-203,Hgf;Hgf;Hgf;Hgf;Hgf;Hgf,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,8,15234,ENSMUSG00000028864,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16522,cg08541883,0.0000146,0.0000122,1.199440558,0.231272632,gain,ns,-0.0000441,0.0000206,-2.134752493,0.03356523,neg,ns,0.017661331,0.006048895,2.919761634,0.003759706,pos,ns,2.424846067,-0.001134934,0.000208021,-5.455861564,9.98E-08,neg,yes,0.569000671,Tmed10,Tmed10_Intron,12,85366236,85366285,85366284,85366285,50,-,GTGAAGCCAGATCAAATGTTTTTTTTCATACTGTTCCAAAGTTATTTACG,"Intron (Tmed10-201/Tmed10, intron 1 of 4)",12,85342788,85374847,32060,2,Tmed10-201,8562,Tmed10-201;Tmed10-203,Tmed10;Tmed10,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,68581,ENSMUSG00000021248,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4251,cg18479022,0.0000269,0.0000124,2.167406729,0.030964865,gain,ns,-0.0000451,0.0000211,-2.134743161,0.033565999,neg,ns,0.020620434,0.006185079,3.333900086,0.000960231,pos,ns,3.017624361,-0.002053032,0.000212704,-9.652047264,1.91E-19,neg,yes,0.611612327,Anks1,Anks1_Exon,17,27986238,27986287,27986238,27986239,50,-,CGTTTGCTTTCCAGACGGAGATGGGCAGTGCTTTGCATGAGGCTGCTTTG,"Exon (Anks1-203/Anks1, exon 6 of 25)",17,27909306,28062775,153470,1,Anks1-203,76932,Anks1-203;Anks1-202;Anks1-211;Anks1-201,Anks1;Anks1;Anks1;Anks1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,6,224650,ENSMUSG00000024219,conserved gene but different region,17,27986135,27986254,120,*,120,10,0.6,0.987654321,0.083333333,0.000000362,CpGisland,TRUE,U10,Tr-S
5256,cg11700079,0.000199361,0.0000124,16.11835949,7.06E-43,gain,yes,-0.0000449,0.000021,-2.134712221,0.033568549,neg,ns,0.012340097,0.006155957,2.004578158,0.045877531,pos,ns,1.338399964,-0.000225407,0.000211703,-1.064731108,0.287826235,neg,ns,0.144873609,Tlx3,Tlx3_Exon,11,33202444,33202493,33202444,33202445,50,-,CGGTTTTGGAACCAGGTCTTGACCTGCGCGTCCGTCATTTTGAGGGACTT,"Exon (Tlx3-201/Tlx3, exon 2 of 3)",11,33200752,33203589,2838,2,Tlx3-201,1096,Tlx3-201,Tlx3,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,20,27140,ENSMUSG00000040610,conserved gene and region,11,33202138,33202672,535,*,535,46,0.639252336,0.904247502,0.085981308,4.93E-32,CpGisland,TRUE,U13,Hc-P
1751,cg05385111,0.00000508,0.00000291,1.748780542,0.081318722,gain,ns,0.0000105,0.00000494,2.134533866,0.033583254,pos,ns,0.006213037,0.001446352,4.295660976,0.0000233,pos,ns,4.631978938,-0.000139358,0.0000497,-2.801734641,0.005402538,neg,ns,0.054563885,Kctd1,Kctd1_fiveUTR,18,15063525,15063574,15063525,15063526,50,+,CGCTGGTGTTACAGTCCCCGCTGCCAGGCATTCTCGCCATATTGCCGTCT,5' UTR,18,14968685,15151446,182762,2,Kctd1-201,87872,Kctd1-201;Kctd1-202;Kctd1-206;Kctd1-205,Kctd1;Kctd1;Kctd1;Kctd1,0;0;0;-1636,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,9,24,106931,ENSMUSG00000036225,conserved gene but different region,18,15063315,15063752,438,*,438,43,0.673515982,0.892352885,0.098173516,1.42E-32,CpGisland,TRUE,U3,Pr-B
15367,cg23258673,0.0000279,0.00000381,7.322339668,2.11E-12,gain,yes,-0.0000138,0.00000647,-2.13446696,0.033588771,neg,ns,0.000185726,0.00189588,0.097962848,0.922025104,pos,ns,0.035257254,-0.000024,0.0000652,-0.367576328,0.713439993,neg,ns,0.064672516,Galnt16,Galnt16_Exon,12,80519181,80519230,80519181,80519182,50,-,CGCGCCAATGCCATCGCCATCCTGACCGTAGCCTGGATCCTGGGCACTTT,Promoter (<=1kb),12,80518277,80603892,85616,1,Galnt16-206,904,Galnt16-206;Galnt16-204;Galnt16-201,Galnt16;Galnt16;Galnt16,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,7,108760,ENSMUSG00000021130,conserved gene and region,12,80519068,80519208,141,*,141,18,0.716312057,1.017642342,0.127659575,4.37E-16,CpGisland,TRUE,U3,Pr-B
18151,cg18541104,0.0000267,0.00000262,10.18223635,3.39E-21,gain,yes,-0.0000095,0.00000445,-2.134196583,0.033611076,neg,ns,0.002034859,0.001303862,1.560639756,0.119629035,pos,ns,0.922163399,0.0000307,0.0000448,0.684835125,0.493959676,pos,ns,0.031888964,Hsd17b12,Hsd17b12_Intron,2,94243778,94243827,94243778,94243779,50,-,CGAAGTCACGATTCCTTCTCAGTTCGGAATGAACTGTGACTAGAGCCATG,"Intron (Mir670hg-205/Mir670hg-205, intron 2 of 5)",2,94032689,94157964,125276,2,Hsd17b12-201,-85863,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,14,19,56348,ENSMUSG00000027195,conserved gene but different region,2,94243768,94243904,137,*,137,10,0.525547445,1.064491065,0.072992701,0.00000123,CpGisland,TRUE,U13,Hc-P
15207,cg00883967,-0.0000317,0.0000103,-3.086792166,0.002206016,loss,ns,0.0000372,0.0000174,2.134124854,0.033616996,pos,ns,-0.002207579,0.005103689,-0.432545818,0.665645508,neg,ns,0.176756995,-0.000212663,0.000175515,-1.211647495,0.226570102,neg,ns,0.719672205,Gm48470,Gm48470_Intergenic_upstream,13,79592770,79592819,79592818,79592819,50,+,TTTTCTTGACAGTGCCATCATAAATCCATGCAGCTGCGGGGTAACTGTCG,Distal Intergenic,13,79441143,79441407,265,2,Gm48470-201,-151363,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,20,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6153,cg13519748,-0.00000937,0.00000491,-1.909562759,0.057112413,loss,ns,0.0000178,0.00000834,2.134085081,0.033620279,pos,ns,-0.001947054,0.002443263,-0.796907379,0.426114733,neg,ns,0.37047345,0.0000931,0.000084,1.108433814,0.268533723,pos,ns,0.902751279,Rpl17-ps9,Rpl17-ps9_Intergenic_downstream,7,36157098,36157147,36157146,36157147,50,-,AAACATCATAAGTTAGGCTTGATTTGTTGAGCAAGCAGCCTGACAATTCG,Distal Intergenic,7,36118274,36118828,555,1,Rpl17-ps9-201,38873,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,22,100043872,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9605,cg25943464,-0.000054,0.0000144,-3.748330947,0.000212314,loss,ns,0.0000522,0.0000245,2.134027249,0.033625052,pos,ns,-0.006823649,0.007164647,-0.952405497,0.341633367,neg,ns,0.466439719,-0.00019887,0.000246392,-0.807128448,0.42021131,neg,ns,0.732564644,Ncam1,Ncam1_threeUTR,9,49503635,49503684,49503683,49503684,50,+,CACAACCAAACTATGTTGAAGTTTTATTTCAATACTATGACAAAAACACG,3' UTR,9,49502136,49798925,296790,2,Ncam1-204,295241,Ncam1-204;Ncam1-205;Ncam1-202,Ncam1;Ncam1;Ncam1,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,16,17967,ENSMUSG00000039542,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20603,cg01084584,0.0000147,0.00000342,4.286276675,0.0000243,gain,ns,-0.0000124,0.00000581,-2.133987772,0.033628311,neg,ns,-0.003238258,0.001702137,-1.90246618,0.05803674,neg,ns,1.23629699,-0.0000685,0.0000585,-1.170993222,0.242500816,neg,ns,0.842841989,Nsf,Nsf_Intron,11,103840919,103840968,103840967,103840968,50,+,AGCCTCTCACTGCTAAGCCGGACATTTCCTAACACTGGACAAATTGTACG,"Intron (Nsf-202/Nsf, intron 17 of 20)",11,103821782,103954056,132275,2,Nsf-202,113088,Nsf-202,Nsf,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,3,18195,ENSMUSG00000034187,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19962,cg09414413,-0.00000122,0.00000241,-0.50465997,0.614156214,loss,ns,-0.00000874,0.0000041,-2.133876012,0.033637539,neg,ns,-0.000345186,0.001200107,-0.287629072,0.773822874,neg,ns,0.111358437,0.0000146,0.0000413,0.353828533,0.723707913,pos,ns,0.930629433,Clpb,Clpb_Intron,7,101772974,101773023,101772974,101772975,50,+,CGCAGAGCAGTAAAACATATTGTATACTTAGTGATAATTATCCTGCCTTT,"Intron (Clpb-201/Clpb, intron 7 of 15)",7,101663633,101790168,126536,1,Clpb-201,109341,Clpb-201;Clpb-202;Clpb-211;Clpb-208;Clpb-204;Clpb-209,Clpb;Clpb;Clpb;Clpb;Clpb;Clpb,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,21,21,20480,ENSMUSG00000001829,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
620,cg22818378,0.0000193,0.0000152,1.266897402,0.206142958,gain,ns,0.0000552,0.0000259,2.133618813,0.033658783,pos,ns,0.008103084,0.007575253,1.069678274,0.285596319,pos,ns,0.544247395,-0.000124055,0.000260512,-0.476196759,0.634269646,neg,ns,0.600920222,Gm44908,Gm44908_Intergenic_downstream,8,7289567,7289616,7289615,7289616,50,+,TAATTTAAAGTAAATGCTTTTACAGATGGCATCTGTTAGGCCGCAGAACG,Distal Intergenic,8,7231234,7231499,266,1,Gm44908-201,58333,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,3,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3038,cg02145833,-0.00000168,0.00000108,-1.55126094,0.12185944,loss,ns,0.00000393,0.00000184,2.133468201,0.033671228,pos,ns,0.000285658,0.000539882,0.529111878,0.597106499,pos,ns,0.223948202,-0.00000503,0.0000186,-0.271001081,0.786570558,neg,ns,0.970244679,Lrmda,Lrmda_Intron,14,22457829,22457878,22457829,22457830,50,+,CGAAAAATTGGACGTGAAATTGGAAACATAGCTGAGAACAAAGTAAATTT,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,438117,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206;Lrmda-202,Lrmda;Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2683,cg01107534,0.0000661,0.0000137,4.824168212,0.00000221,gain,ns,-0.0000497,0.0000233,-2.133280592,0.033686737,neg,ns,0.011399699,0.006819704,1.671582674,0.095615705,pos,ns,1.019470767,-0.000404425,0.000234529,-1.724412608,0.085630208,neg,ns,0.199731,Adk,Adk_Intron,14,21369243,21369292,21369243,21369244,50,+,CGTCATGGTTTCTTTGTTCTGCCAGCACAGTGTTATGACGCACTCTGCTA,"Intron (Adk-201/Adk, intron 8 of 10)",14,21052574,21448569,395996,1,Adk-201,316669,Adk-201;Adk-206;Adk-207;Adk-209,Adk;Adk;Adk;Adk,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,10,11534,ENSMUSG00000039197,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27860,cg02895393,-0.0000227,0.00000527,-4.315846423,0.0000214,loss,ns,-0.0000191,0.00000895,-2.132636789,0.033740002,neg,ns,-0.01101931,0.002622471,-4.201880656,0.0000347,neg,ns,4.460243701,0.000302478,0.0000902,3.353917939,0.000895656,pos,ns,0.863885471,Ush2a,Ush2a_Intron,1,188656654,188656703,188656654,188656655,50,+,CGGAGAGGGAGCTATTACACATGACAGGGGTGATCAAGGGACTCCAGACC,"Intron (Ush2a-201/Ush2a, intron 36 of 70)",1,188263034,188965041,702008,1,Ush2a-201,393620,Ush2a-201;Ush2a-204,Ush2a;Ush2a,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,33,36,22283,ENSMUSG00000026609,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8043,cg20911859,-0.0000646,0.0000139,-4.64909899,0.00000494,loss,ns,0.0000504,0.0000236,2.132564438,0.033745992,pos,ns,0.003608602,0.006919181,0.521535988,0.602365837,pos,ns,0.220139667,0.0000183,0.00023795,0.076896249,0.938755687,pos,ns,0.631494799,Pax2,Pax2_Intergenic_upstream,19,44699254,44699303,44699302,44699303,50,+,TAAGTTACGACTTCAATTTCATTTTATGAATATTTTCCTTGGGGAGCACG,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-56742,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
2630,cg20916546,-0.00000263,0.00000498,-0.527721038,0.598070475,loss,ns,-0.000018,0.00000846,-2.132179288,0.033777897,neg,ns,-0.00610606,0.002477392,-2.464712924,0.014254282,neg,ns,1.846054639,0.0000644,0.0000852,0.756206726,0.450099525,pos,ns,0.949987668,Camk2g,Camk2g_threeUTR,14,20736672,20736721,20736720,20736721,50,+,ACAGCAGAGACAGACACGAAGGGCGGGCGGGAGGGCTGCATGCAGGGGCG,3' UTR,14,20734875,20794051,59177,2,Camk2g-203,57330,Camk2g-203;Camk2g-201;Camk2g-202;Camk2g-205;Camk2g-217;Camk2g-210;Camk2g-209;Camk2g-204;Camk2g-212;Camk2g-211;Ndst2-202,Camk2g;Camk2g;Camk2g;Camk2g;Camk2g;Camk2g;Camk2g;Camk2g;Camk2g;Camk2g;Ndst2,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,15,12325,ENSMUSG00000021820,conserved gene and region,14,20736668,20736817,150,*,150,10,0.593333333,0.765306122,0.066666667,0.00000279,CpGisland,TRUE,U11,Tr-P
25076,cg02746768,-0.00000122,0.00000293,-0.417096449,0.676896552,loss,ns,-0.0000106,0.00000498,-2.131790392,0.033810139,neg,ns,0.006158459,0.00145837,4.222836762,0.0000317,pos,ns,4.498355736,0.000108069,0.0000502,2.154776731,0.031949269,pos,ns,0.915777297,Gpcpd1,Gpcpd1_Intron,2,132563240,132563289,132563288,132563289,50,-,AAACATACTTACCATGGCAGCCCCTGCATCACACGGTACATGTGTACACG,"Intron (Gpcpd1-212/Gpcpd1, intron 4 of 17)",2,132529082,132578178,49097,2,Gpcpd1-212,14889,Gpcpd1-212;Gpcpd1-204;Gpcpd1-202;Gpcpd1-213;Gpcpd1-211;Gpcpd1-205;Gpcpd1-201;Gpcpd1-206;Gpcpd1-203;Gpcpd1-210;Gpcpd1-209,Gpcpd1;Gpcpd1;Gpcpd1;Gpcpd1;Gpcpd1;Gpcpd1;Gpcpd1;Gpcpd1;Gpcpd1;Gpcpd1;Gpcpd1,0;0;0;0;0;0;0;0;0;0;14957,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,3,74182,ENSMUSG00000027346,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10065,cg24557453,-0.00000856,0.00000654,-1.309795632,0.191234789,loss,ns,0.0000237,0.0000111,2.131739051,0.033814397,pos,ns,0.001685452,0.003252636,0.518180346,0.604702075,pos,ns,0.218458541,-0.000305402,0.000111858,-2.730269156,0.006690225,neg,ns,0.794768484,Zc3h12c,Zc3h12c_Intron,9,52146467,52146516,52146515,52146516,50,-,GGTTTACCCTCCGAGAACAATGCAGCTGCCAAACCAATCTGGAAGCTCCG,"Intron (Zc3h12c-202/Zc3h12c, intron 1 of 5)",9,52111344,52168572,57229,2,Zc3h12c-202,22056,Zc3h12c-202;Zc3h12c-201,Zc3h12c;Zc3h12c,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,244871,ENSMUSG00000035164,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22248,cg24519727,0.0000518,0.0000242,2.141184372,0.033038682,gain,ns,-0.0000876,0.0000411,-2.131095722,0.033867797,neg,ns,-0.005552475,0.012043359,-0.461040418,0.645092898,neg,ns,0.190377739,0.000215748,0.00041417,0.52091714,0.602796379,pos,ns,0.321082316,Mical2,Mical2_Intron,7,112390741,112390790,112390789,112390790,50,-,CACTGAGCAGATGTCATGTAGTAAAAATGGGTGCCAGATGCTGTGAGCCG,"Intron (Mical2-212/Mical2, intron 8 of 13)",7,112349394,112412987,63594,1,Mical2-212,41347,Mical2-212;Mical2-213;Mical2-204;Mical2-201;Mical2-205;Mical2-211,Mical2;Mical2;Mical2;Mical2;Mical2;Mical2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,3,320878,ENSMUSG00000038244,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
26514,cg11040210,0.0000295,0.000013,2.270311555,0.023874772,gain,ns,-0.000047,0.0000221,-2.13069953,0.033900718,neg,ns,0.00192072,0.006464929,0.297098363,0.766590389,pos,ns,0.11543663,0.000396696,0.000222328,1.784279727,0.075356155,pos,ns,0.35678824,Casz1,Casz1_Intron,4,148860290,148860339,148860338,148860339,50,-,AGTGTTCAATTTCTTTTGTGCAACTGCAATGGGGTAGAAGCTCCCTTGCG,"Intron (Casz1-201/Casz1, intron 2 of 15)",4,148804429,148945129,140701,1,Casz1-201,55861,Casz1-201;Casz1-202,Casz1;Casz1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,94,124,69743,ENSMUSG00000028977,mapped to different genes,4,148860338,148860464,127,*,127,10,0.708661417,0.632155301,0.078740158,0.000000615,CpGisland,TRUE,U13,Hc-P
11408,cg01523865,0.0000525,0.0000157,3.33430558,0.000958881,gain,ns,0.000057,0.0000267,2.130642649,0.033905447,pos,ns,0.024655346,0.007832399,3.147866595,0.001804666,pos,ns,2.743603178,-0.00080817,0.000269356,-3.000384122,0.002915192,neg,ns,0.287587794,Zic3,Zic3_Exon,X,58033432,58033481,58033480,58033481,50,+,GCACATGCATGTGCATACCTCGGACAAGCCCTATATCTGCAAAGTGTGCG,"Exon (Zic3-201/Zic3, exon 2 of 3)",20,58030643,58036559,5917,1,Zic3-201,2789,Zic3-204;Zic3-201;Zic3-203;Zic3-202,Zic3;Zic3;Zic3;Zic3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,17,22773,ENSMUSG00000067860,conserved gene and region,X,58033387,58033635,249,*,249,20,0.546184739,1.096191944,0.080321285,1.23E-13,CpGisland,TRUE,U13,Hc-P
2673,cg17879470,-0.00000261,0.00000108,-2.429988865,0.015666711,loss,ns,0.00000389,0.00000183,2.130513224,0.033916209,pos,ns,0.000885095,0.000535477,1.652910313,0.099361464,pos,ns,1.00278202,-0.0000322,0.0000184,-1.74807943,0.08144025,neg,ns,0.966843368,Vps54,Vps54_Exon,11,21263309,21263358,21263309,21263310,50,-,CGACCTGTGCCATCACTGCCAGATGTGTGTCCCAAGGAACCCACAGGTAA,"Exon (Vps54-202/Vps54, exon 2 of 23)",11,21239281,21321122,81842,1,Vps54-202,24028,Vps54-202;Vps54-201,Vps54;Vps54,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,245944,ENSMUSG00000020128,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15849,cg16573364,0.0000102,0.00000771,1.317989321,0.188480306,gain,ns,0.0000279,0.0000131,2.130481833,0.03391882,pos,ns,0.008015492,0.003835086,2.090042627,0.037428552,pos,ns,1.426796977,-0.000143362,0.000131888,-1.086999232,0.2778816,neg,ns,0.845542017,Mef2c,Mef2c_Exon,13,83662359,83662408,83662407,83662408,50,-,ACTCAAAGCCTCAACATCAAGTCAGAACCTGTTTCTCCTCCTAGAGACCG,"Exon (Mef2c-218/Mef2c, exon 11 of 11)",13,83504034,83663343,159310,1,Mef2c-218,158325,Mef2c-218;Mef2c-228;Mef2c-201;Mef2c-202;Mef2c-222;Mef2c-223;Mef2c-227;Mef2c-213;Mef2c-214;Mef2c-212;Mef2c-203;Mef2c-219;Mef2c-225;Mef2c-230;Mef2c-211,Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,41,17260,ENSMUSG00000005583,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12004,cg09421833,-0.0000295,0.00000555,-5.320100208,0.000000199,loss,yes,-0.0000201,0.00000942,-2.129746879,0.033979992,neg,ns,-0.002618822,0.002760346,-0.948729872,0.343497018,neg,ns,0.464077028,-0.000139165,0.0000949,-1.466001838,0.143661372,neg,ns,0.809067707,Ncor1,Ncor1_Exon,11,62325477,62325526,62325525,62325526,50,-,TCCCACTTACCCATATCAGAGTCACCTCCACCAGAGGAGTTCAACTTACG,"Exon (Ncor1-204/Ncor1, exon 41 of 45)",11,62316426,62438515,122090,2,Ncor1-204,112989,Ncor1-204;Ncor1-201;Ncor1-213;Ncor1-216;Ncor1-214;Ncor1-202;Ncor1-205;Ncor1-209;Ncor1-223;Ncor1-219;Ttc19-205;Ttc19-204,Ncor1;Ncor1;Ncor1;Ncor1;Ncor1;Ncor1;Ncor1;Ncor1;Ncor1;Ncor1;Ttc19;Ttc19,0;0;0;-4256;0;0;0;0;0;5417;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,10,20185,ENSMUSG00000018501,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25404,cg24267623,-0.00000606,0.00000639,-0.948240716,0.343745526,loss,ns,0.0000231,0.0000109,2.129682908,0.033985321,pos,ns,0.009009208,0.003181366,2.831867959,0.004930463,pos,ns,2.307112317,-0.000220267,0.000109407,-2.013284619,0.044948739,neg,ns,0.916635218,Cux1,Cux1_threeUTR,5,136274188,136274237,136274188,136274189,50,-,CGTTTTGACTGTGCAATCTCTTAGTGGCAACTGAACAGCTACAAAAACTT,3' UTR,5,136248135,136360018,111884,2,Cux1-205,85781,Cux1-205;Cux1-207;Cux1-211;Cux1-203;Cux1-213;Cux1-201;Cux1-204;Cux1-209;Cux1-212;Cux1-206;Cux1-202,Cux1;Cux1;Cux1;Cux1;Cux1;Cux1;Cux1;Cux1;Cux1;Cux1;Cux1,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,8,21,13047,ENSMUSG00000029705,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15861,cg19777105,0.00000176,0.000000392,4.490023323,0.0000101,gain,ns,-0.00000142,0.000000666,-2.129023517,0.034040292,neg,ns,0.0000141,0.000195013,0.072057969,0.942602242,pos,ns,0.025671531,0.00000995,0.00000671,1.48377415,0.138884843,pos,ns,0.011178709,Gm6411,Gm6411_Intron,13,83729775,83729824,83729775,83729776,50,-,CGTCAATGGACGTGACCTCGCAGCTAAACCTTGAACGTGAAGCCGGGATG,"Intron (C130071C03Rik-201/C130071C03Rik-201, intron 1 of 3)",13,83761132,83762335,1204,2,Gm6411-201,32560,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,36,623241,NA,mapped to different genes,13,83729748,83729900,153,*,153,14,0.620915033,0.998136067,0.091503268,1.88E-10,CpGisland,TRUE,U3,Pr-B
25940,cg15256103,-0.0000583,0.0000307,-1.896554698,0.058816215,loss,ns,-0.000111194,0.0000522,-2.128926655,0.034048373,neg,ns,0.081997351,0.015301632,5.358732259,0.000000164,pos,ns,6.785623716,-0.000681492,0.000526222,-1.295066105,0.196261084,neg,ns,0.648088319,Spen,Spen_Exon,4,141517037,141517086,141517037,141517038,50,-,CGTACCTCCCGGGTAATATCATCCCTGTAGATATCCCTGTGTACCACACT,"Exon (Spen-201/Spen, exon 3 of 15)",4,141467890,141538449,70560,2,Spen-201,21363,Spen-201;Spen-202;Spen-203;Spen-205,Spen;Spen;Spen;Spen,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,17,19,56381,ENSMUSG00000040761,conserved gene and region,4,141516893,141517057,165,*,165,11,0.636363636,0.665810712,0.066666667,0.000000724,CpGisland,TRUE,U10,Tr-S
1653,cg00967835,-0.000000511,0.00000398,-0.128435552,0.89788758,loss,ns,0.0000144,0.00000676,2.128620575,0.034073921,pos,ns,0.001746884,0.001980343,0.882112223,0.37839959,pos,ns,0.422049343,-0.00000651,0.0000681,-0.095627933,0.923877866,neg,ns,0.521315552,Atxn7,Atxn7_Exon,14,14052952,14053001,14053000,14053001,50,+,ATGATTTCTACTTGGTGGTGTGTAACGACTGTAATCAGGTTGTCAAACCG,"Exon (Atxn7-203/Atxn7, exon 5 of 13)",14,13961440,14103482,142043,1,Atxn7-203,91512,Atxn7-203;Atxn7-202;Atxn7-201;Atxn7-209,Atxn7;Atxn7;Atxn7;Atxn7,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,246103,ENSMUSG00000021738,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26554,cg24488067,0.0000037,0.00000418,0.885344669,0.376656976,gain,ns,-0.0000151,0.00000711,-2.128369351,0.034094903,neg,ns,-0.007497542,0.002082691,-3.599930806,0.000370469,neg,ns,3.431248205,0.000213937,0.0000716,2.986969931,0.003042394,pos,ns,0.934251039,Casz1,Casz1_Intron,4,148916052,148916101,148916052,148916053,50,-,CGGCTGCTGTGCATTTGTTTGAAATAATCAAGGAAATATGGTCAGAAATT,"Intron (Casz1-201/Casz1, intron 4 of 15)",4,148804429,148945129,140701,1,Casz1-201,111623,Casz1-201;Casz1-202;Casz1-206,Casz1;Casz1;Casz1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,94,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2512,cg02628016,-0.0000128,0.0000032,-3.989944718,0.0000825,loss,ns,-0.0000116,0.00000544,-2.128282454,0.034102163,neg,ns,-0.002247224,0.001592495,-1.411134381,0.159207781,neg,ns,0.798035711,-0.0000392,0.0000548,-0.715737409,0.474692265,neg,ns,0.942769691,Klhl24,Klhl24_Exon,16,20115901,20115950,20115901,20115902,50,+,CGTGATGTCTGGATTTATAACTCACAGTTAAATATTTGGATCAGAGTTGC,"Exon (Klhl24-201/Klhl24, exon 5 of 8)",16,20097542,20129221,31680,1,Klhl24-201,18359,Klhl24-201,Klhl24,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,75785,ENSMUSG00000062901,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22574,cg04397844,-0.00000926,0.00000575,-1.609441268,0.108537707,loss,ns,-0.0000208,0.00000977,-2.128120673,0.034115683,neg,ns,-0.001853187,0.002863568,-0.647160118,0.518007237,neg,ns,0.285664173,-0.000110826,0.0000985,-1.125390536,0.261294117,neg,ns,0.877495375,Rnf10,Rnf10_Exon,5,115250070,115250119,115250070,115250071,50,-,CGGTGCAGCACCTGCTCCTTAGAGGCCAGCAGCAACTTGGAGTACTGGCT,"Exon (Rnf10-203/Rnf10, exon 7 of 17)",5,115241412,115272898,31487,2,Rnf10-203,22779,Pop5-203;Rnf10-203;Rnf10-201;Rnf10-202;Rnf10-206;Rnf10-204;Rnf10-208;Rnf10-205;Rnf10-207,Pop5;Rnf10;Rnf10;Rnf10;Rnf10;Rnf10;Rnf10;Rnf10;Rnf10,12038;0;0;0;0;-3995;-583;5508;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,50849,ENSMUSG00000041740,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23341,cg10508317,0.0000765,0.0000149,5.125732714,0.000000523,gain,yes,-0.0000539,0.0000254,-2.127498658,0.034167707,neg,ns,0.017184059,0.007428837,2.313155821,0.021368322,pos,ns,1.670229574,-0.000151634,0.000255477,-0.593532191,0.553257854,neg,ns,0.13724128,Socs3,Socs3_Exon,11,117968152,117968201,117968200,117968201,50,-,AGCTGAAGGTCTTGAGGCGCAGGCTGGTGTCCAGGGGGCGGCTCATCCCG,Promoter (<=1kb),11,117966079,117969186,3108,2,Socs3-201,985,Socs3-201;Socs3-202;Socs3-203,Socs3;Socs3;Socs3,0;1846;1250,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,9,12702,ENSMUSG00000053113,conserved gene and region,11,117967759,117969258,1500,*,1500,136,0.671333333,0.805559943,0.090666667,1.37E-96,CpGisland,TRUE,NA,NRS
11261,cg25050264,-0.0000112,0.00000644,-1.74043063,0.082775711,loss,ns,0.0000233,0.0000109,2.127435652,0.03417298,pos,ns,0.005456535,0.003203448,1.703331719,0.089508229,pos,ns,1.048137034,-0.000261042,0.000110166,-2.369522736,0.018423298,neg,ns,0.834755236,Arhgef6,Arhgef6_Exon,X,57243388,57243437,57243436,57243437,50,-,ACCTCTTTATAACCTAGTGCTGCTGATGGTCTAAGTGGAGGTGCAGGTCG,"Exon (Arhgef6-201/Arhgef6, exon 16 of 22)",20,57231485,57338729,107245,2,Arhgef6-201,95292,Arhgef6-205;Arhgef6-201;Arhgef6-202;Arhgef6-207,Arhgef6;Arhgef6;Arhgef6;Arhgef6,-2499;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,5,73341,ENSMUSG00000031133,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8174,cg23419437,-0.0000338,0.0000105,-3.233550004,0.001354414,loss,ns,0.0000378,0.0000178,2.12740076,0.034175901,pos,ns,-0.008358808,0.005202199,-1.606783541,0.109119914,neg,ns,0.962095983,0.000292113,0.000178903,1.632796694,0.103527022,pos,ns,0.742520442,Pax2,Pax2_Intron,19,44820409,44820458,44820457,44820458,50,-,CGACATTTCAATCAAGCGAGGAGTAACAAAAGCAGAACCATTAACATTCG,"Intron (Pax2-203/Pax2, intron 7 of 9)",19,44756045,44837851,81807,1,Pax2-203,64364,Pax2-203;Pax2-201;Pax2-202,Pax2;Pax2;Pax2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,35,166,18504,ENSMUSG00000004231,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21285,cg12585954,-0.00000414,0.00000462,-0.895915324,0.370993142,loss,ns,-0.0000167,0.00000785,-2.126871869,0.034220199,neg,ns,-0.009531278,0.002299456,-4.145013598,0.0000439,neg,ns,4.35758944,0.000106146,0.0000791,1.342293982,0.180482875,pos,ns,0.886469497,Gm5187,Gm5187_Intron,12,107093570,107093619,107093618,107093619,50,-,AGACCAACTTGGATTGCCATCTGGCCCACACATTTTCCTGGCACGGCCCG,"Intron (Gm16086-201/Gm16086-201, intron 1 of 2)",12,107205076,107206066,991,2,Gm5187-201,112496,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,10,382635,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1119,cg08498897,-0.00000783,0.00000298,-2.628376606,0.009006584,loss,ns,0.0000108,0.00000506,2.12663116,0.034240376,pos,ns,0.000696018,0.001483141,0.469286286,0.639194902,pos,ns,0.194366697,-0.0000618,0.000051,-1.210998934,0.226818212,neg,ns,0.955285631,Ikzf1,Ikzf1_Promoter,11,11676510,11676559,11676510,11676511,50,-,CGCACAACAGTGGGTTCTTACGGAGCTGCCTAATGCACTGCTGGGAAAAC,Promoter (8-9kb),11,11685003,11754083,69081,1,Ikzf1-205,-8493,NA,NA,NA,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,4,15,22778,ENSMUSG00000018654,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3074,cg21291553,0.00000143,0.00000592,0.240901971,0.809790342,gain,ns,0.0000214,0.00001,2.126573601,0.034245202,pos,ns,-0.002251758,0.002944094,-0.764839172,0.444949155,neg,ns,0.351689614,0.000158948,0.000101247,1.569905755,0.117457142,pos,ns,0.867106295,Lrmda,Lrmda_Intron,14,22545844,22545893,22545892,22545893,50,+,CAAATTGAGCCATTTTGTTCTCTGTAAAATAAACCTCAGGCCATTATGCG,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,526132,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206;Lrmda-202,Lrmda;Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11016,cg27213895,0.000015,0.00000723,2.076849408,0.038638839,gain,ns,0.0000261,0.0000123,2.126556071,0.034246672,pos,ns,-0.004552352,0.003599677,-1.264655521,0.206944761,neg,ns,0.684145564,0.000356716,0.000123793,2.881565072,0.004233182,pos,ns,0.644169887,Gm5184,Gm5184_Intron,12,56258447,56258496,56258495,56258496,50,-,TGATGCAGAGCAAAAAAGGTCCATCCACTTCACTTGTGTTGCCTCCTGCG,"Intron (Gm19990-201/Gm19990-201, intron 1 of 3)",12,56189414,56191115,1702,1,Gm5184-201,69082,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,3,382601,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19337,cg01670514,-0.0000147,0.00000537,-2.727388087,0.00674752,loss,ns,0.0000194,0.00000913,2.126414106,0.034258579,pos,ns,0.001463183,0.002673562,0.547278342,0.58458129,pos,ns,0.233155089,-0.000097,0.0000919,-1.054681416,0.29239235,neg,ns,0.90320602,Cdh8,Cdh8_Intron,8,99026668,99026717,99026716,99026717,50,+,GCAATCAGAAGGTTATACATTCGTGAGATTCCCTGCAAAGCCAGTGATCG,"Intron (Gm15679-201/Gm15679-201, intron 2 of 2)",8,99024471,99416427,391957,2,Cdh8-207,389710,Cdh8-207;Cdh8-204;Cdh8-201;Cdh8-206;Cdh8-203,Cdh8;Cdh8;Cdh8;Cdh8;Cdh8,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,16,12564,ENSMUSG00000036510,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12323,cg09129371,-0.0000263,0.00000854,-3.077269793,0.002275535,loss,ns,0.0000309,0.0000145,2.126186387,0.034277685,pos,ns,0.011108708,0.004252585,2.612225111,0.009433572,pos,ns,2.02532384,-0.000457281,0.000146246,-3.126793345,0.001934828,neg,ns,0.861870028,Fam49b,Fam49b_Exon,15,63956551,63956600,63956551,63956552,50,-,CGCAGTCTACTGCAGGCAAAGAGAAATAGATATAAAATCATCTTCTCACT,"Exon (Fam49b-201/Fam49b, exon 3 of 12)",15,63929097,64060448,131352,2,Fam49b-201,103848,Fam49b-201;Fam49b-202;Fam49b-207;Fam49b-208;Fam49b-205;Fam49b-204;Fam49b-206,Fam49b;Fam49b;Fam49b;Fam49b;Fam49b;Fam49b;Fam49b,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,223601,ENSMUSG00000022378,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16168,cg14067749,-0.00000432,0.0000253,-0.170497564,0.864730071,loss,ns,0.0000915,0.0000431,2.126162582,0.034279683,pos,ns,0.073592052,0.012614637,5.833862086,1.36E-08,pos,ns,7.865754767,-0.002256988,0.000433816,-5.202635259,0.000000358,neg,yes,0.672761386,Bnc2,Bnc2_Intron,4,84548680,84548729,84548680,84548681,50,-,CGGGCCATGTCAAAGCCGATATAATTAACTAGAGGCTCAGCAACGGATCA,"Intron (Bnc2-201/Bnc2, intron 2 of 7)",4,84275095,84675034,399940,2,Bnc2-201,126305,Bnc2-201;Bnc2-202;Bnc2-214;Bnc2-215;Bnc2-206;Bnc2-211;Bnc2-217;Bnc2-207;Bnc2-203;Bnc2-209;Bnc2-221;Bnc2-204;Bnc2-220;Bnc2-210,Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,91,242509,ENSMUSG00000028487,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16664,cg07869780,0.000099,0.0000104,9.472277602,7.31E-19,gain,yes,-0.0000377,0.0000178,-2.126113943,0.034283765,neg,ns,-0.000269118,0.005200567,-0.051747789,0.958762986,neg,ns,0.018288741,0.000297571,0.000178847,1.663827903,0.097157319,pos,ns,0.313764725,Tbx4,Tbx4_fiveUTR,11,85890044,85890093,85890092,85890093,50,+,TGTGCTGTGCCCGCAGGAGATGCTGCAGGATAAGGGCCTGTCCGAGAGCG,Promoter (<=1kb),11,85890063,85916097,26035,1,Tbx4-201,0,Tbx4-203;Tbx4-201,Tbx4;Tbx4,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,9,21387,ENSMUSG00000000094,conserved gene but different region,11,85890030,85890257,228,*,228,27,0.736842105,0.874431818,0.118421053,5.25E-23,CpGisland,TRUE,U13,Hc-P
10689,cg15203775,0.00000372,0.00000327,1.139445528,0.255397048,gain,ns,-0.0000118,0.00000555,-2.125841928,0.034306604,neg,ns,0.000231823,0.001625812,0.142589085,0.886707349,pos,ns,0.052219692,-0.0000704,0.0000559,-1.258424682,0.209185146,neg,ns,0.904414425,Myh7,Myh7_Exon,14,54978941,54978990,54978941,54978942,50,-,CGGTGCTCATTCATCTGGTCTTCCAAGGTCCGGCACATCTTCTCCAGGTT,"Exon (Myh7-201/Myh7, exon 29 of 41)",14,54970684,54994626,23943,2,Myh7-201,15636,Gm17428-201;Myh7-201;Myh7-204;Myh7-202,Gm17428;Myh7;Myh7;Myh7,2008;0;0;8428,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,140781,ENSMUSG00000053093,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20057,cg01962823,0.0000471,0.0000141,3.338462964,0.000945141,gain,ns,0.0000509,0.000024,2.125629562,0.034324443,pos,ns,0.025618522,0.00702126,3.648707442,0.000309139,pos,ns,3.509846611,-0.000301353,0.000241461,-1.248042237,0.212957427,neg,ns,0.365521454,Sp7,Sp7_Promoter,15,102370943,102370992,102370943,102370944,50,+,CGGCTCTGGTCCTTCCAGTATAAACCCCCTAGGCATCTGGTTTCTATCCA,Promoter (3-4kb),15,102366902,102367182,281,2,Sp7-203,-3761,Sp7-201;Sp7-202;Sp7-203,Sp7;Sp7;Sp7,0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,5,10,170574,ENSMUSG00000060284,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
16270,cg26022905,-0.0000113,0.00000237,-4.771925916,0.00000282,loss,ns,0.00000856,0.00000403,2.125548536,0.034331252,pos,ns,0.000753935,0.001179772,0.639051214,0.523261512,pos,ns,0.281281209,-0.00000171,0.0000406,-0.042250794,0.966325971,neg,ns,0.943707845,Abcg8,Abcg8_Intergenic_downstream,17,84703210,84703259,84703258,84703259,50,+,TACATTTCTAATGGAAACACTCCCATGCATGATTGTACAACAGGAAAGCG,Downstream (1-2kb),17,84683131,84698963,15833,1,Abcg8-203,20079,Abcg8-202;Abcg8-201;Abcg8-203;Lrpprc-201,Abcg8;Abcg8;Abcg8;Lrpprc,26908;20089;20079;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,2,2,67470,ENSMUSG00000024254,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7458,cg07322285,0.000137522,0.0000096,14.32292654,4.63E-36,gain,yes,-0.0000347,0.0000163,-2.125481211,0.03433691,neg,ns,0.015368823,0.004778791,3.216048378,0.001436907,pos,ns,2.842571253,-0.000197742,0.000164342,-1.203230452,0.229805236,neg,ns,0.192005357,Pou3f3,Pou3f3_Promoter,1,42695565,42695614,42695613,42695614,50,-,AGATTTCCAGCTTCTACGACGCTCTGCCTAAATTAAAAAGCAACCAATCG,Promoter (<=1kb),1,42694925,42703176,8252,1,Pou3f3-202,640,Pou3f3-202;Pou3f3-201,Pou3f3;Pou3f3,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,3,37,18993,ENSMUSG00000045515,conserved gene and region,1,42695391,42695839,449,*,449,33,0.634743875,0.816633598,0.073496659,6.76E-21,CpGisland,TRUE,U3,Pr-B
15813,cg15762063,-0.00000375,0.00000474,-0.790657384,0.429748397,loss,ns,-0.0000171,0.00000806,-2.125447411,0.034339751,neg,ns,-0.006935452,0.002360709,-2.937868422,0.00355261,neg,ns,2.44945247,0.000165197,0.0000812,2.03482894,0.042718691,pos,ns,0.889758756,Actg2,Actg2_fiveUTR,6,83536257,83536306,83536305,83536306,50,-,CCCAGAGGCGGATCTTCTTTAAACAAAGTCCCTAAAAAGGCCAGCTGACG,Promoter (<=1kb),6,83512905,83536265,23361,2,Actg2-201,0,Actg2-201;Actg2-206,Actg2;Actg2,0;-34,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,1,11468,ENSMUSG00000059430,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14855,cg17145823.2,0.0000219,0.00000882,2.484217962,0.013511441,gain,ns,0.0000318,0.000015,2.125351329,0.034347828,pos,ns,0.010893303,0.004388605,2.482178733,0.013587462,pos,ns,1.866861655,-0.0000853,0.000150924,-0.565044383,0.572452249,neg,ns,0.285642487,Ptprd,Ptprd_Intron,4,77993622,77993671,77993622,77993623,50,-,CGTGGCCAAAGATTTTCAAATAATTGTGTAAAATTGCTCCTGTTATGTAA,"Intron (Ptprd-205/Ptprd, intron 1 of 14)",4,76139382,78211895,2072514,2,Ptprd-205,218224,Ptprd-205;Ptprd-211;Ptprd-209;Ptprd-215;Ptprd-210;Ptprd-207;Ptprd-208,Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,32,19266,ENSMUSG00000028399,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26976,cg13229709,-8.47E-08,0.00000842,-0.010059414,0.991980354,loss,ns,0.0000304,0.0000143,2.125033018,0.034374598,pos,ns,0.01019397,0.004188324,2.433902218,0.015501573,pos,ns,1.809624217,-0.000277885,0.000144036,-1.929272334,0.054609587,neg,ns,0.838412393,Acbd6,Acbd6_Intron,1,155648750,155648799,155648798,155648799,50,+,GGTATTTGCCCAACACAGCATACTTGGTTATTACTCTTCCAACACATCCG,"Intron (Acbd6-201/Acbd6, intron 6 of 7)",1,155558122,155691330,133209,1,Acbd6-201,90628,Acbd6-201;Acbd6-206,Acbd6;Acbd6,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,7,72482,ENSMUSG00000033701,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27702,cg20888327,-0.00000359,0.00000302,-1.189559804,0.235129742,loss,ns,-0.0000109,0.00000512,-2.124729235,0.034400162,neg,ns,-0.002042329,0.001500828,-1.360801074,0.174565041,neg,ns,0.758042725,0.000105035,0.0000516,2.03502738,0.042698595,pos,ns,0.901210833,Zbtb18,Zbtb18_Exon,1,177447696,177447745,177447696,177447697,50,-,CGGAGAGGCAGAGCCACACGCCACAGCAGCTGGAAAAACAGTAGCCAGCC,"Exon (Zbtb18-202/Zbtb18, exon 2 of 2)",1,177444295,177450764,6470,1,Zbtb18-202,3401,Zbtb18-209;Zbtb18-211;Zbtb18-208;Zbtb18-203;Zbtb18-202;Zbtb18-204;Zbtb18-206;Zbtb18-210;Zbtb18-205;Zbtb18-212;Zbtb18-207;Zbtb18-201,Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,Exon,10,22,30928,ENSMUSG00000063659,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21417,cg02320378,-0.000000839,0.00000429,-0.195480366,0.845144972,loss,ns,0.0000155,0.0000073,2.124577546,0.034412933,pos,ns,0.00354168,0.002137408,1.656997695,0.098531615,pos,ns,1.006424397,-0.000071,0.0000735,-0.966255518,0.334669532,neg,ns,0.923055265,Zswim6,Zswim6_threeUTR,13,107726332,107726381,107726332,107726333,50,-,CGGTGTGGCTCTGTTCTTTAAGTTAAAAAGGGTACAAAGGCAGGCTCAAG,3' UTR,13,107724617,107890064,165448,2,Zswim6-204,163683,Zswim6-204;Zswim6-201;Zswim6-203;Zswim6-202,Zswim6;Zswim6;Zswim6;Zswim6,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,26,67263,ENSMUSG00000032846,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19805,cg03356909,-0.00000837,0.00000279,-3.005734014,0.002865835,loss,ns,0.0000101,0.00000473,2.124253527,0.034440228,pos,ns,0.00040476,0.001386689,0.291889536,0.77056632,pos,ns,0.113189977,-0.0000763,0.0000477,-1.600779685,0.110444266,neg,ns,0.934557467,Pdzrn3,Pdzrn3_Exon,6,101172015,101172064,101172015,101172016,50,-,CGGAGCGGTTTTGAGCAGGATTCGATTTATTGCCTCTATAAACAATAAAG,"Exon (Pdzrn3-203/Pdzrn3, exon 2 of 2)",6,101149609,101377897,228289,2,Pdzrn3-201,205833,Pdzrn3-201;Pdzrn3-205;Pdzrn3-202;Pdzrn3-203,Pdzrn3;Pdzrn3;Pdzrn3;Pdzrn3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,4,55983,ENSMUSG00000035357,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9017,cg12496274,-0.0000144,0.00000433,-3.321527524,0.001002283,loss,ns,-0.0000156,0.00000735,-2.124190051,0.034445577,neg,ns,0.001308621,0.002152697,0.607898038,0.543700181,pos,ns,0.264640523,-0.000136476,0.000074,-1.843494149,0.066211257,neg,ns,0.900925217,Srf,Srf_Exon,17,46551588,46551637,46551588,46551589,50,-,CGCTGCCTGTACTCTTCAGCACAGTCCCATTGGCACTGCTGACAGCACTG,"Exon (Srf-201/Srf, exon 3 of 7)",17,46548329,46556175,7847,2,Srf-201,4538,Srf-201;Srf-203;Srf-202;Srf-204,Srf;Srf;Srf;Srf,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,11,20807,ENSMUSG00000015605,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15463,cg07797033,-0.00000348,0.00000154,-2.261934621,0.024393726,loss,ns,-0.00000556,0.00000262,-2.124185936,0.034445924,neg,ns,-0.001307848,0.000766545,-1.706160809,0.08897968,neg,ns,1.050709161,0.000000573,0.0000264,0.02173555,0.982672889,pos,ns,0.952667153,Adsl,Adsl_threeUTR,15,80967124,80967173,80967124,80967125,50,+,CGCATTCGGCAAGAGCTGCCTTTCATGGCCACAGAGAACATCATCATGGC,3' UTR,15,80948490,80970946,22457,1,Adsl-201,18634,Adsl-201;Adsl-204;Adsl-205;Adsl-212;Adsl-211;Adsl-206;Adsl-207;Adsl-202;Adsl-210,Adsl;Adsl;Adsl;Adsl;Adsl;Adsl;Adsl;Adsl;Adsl,0;0;0;18607;18605;0;18587;5911;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,2,11564,ENSMUSG00000022407,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14600,cg00510450,-0.00000415,0.00000384,-1.08283441,0.279723455,loss,ns,0.0000138,0.00000652,2.123992645,0.034462217,pos,ns,0.002778696,0.001909403,1.455269685,0.146606488,pos,ns,0.833846811,0.0000355,0.0000657,0.540419765,0.589295628,pos,ns,0.933130721,Mctp1,Mctp1_Intron,13,76803821,76803870,76803869,76803870,50,-,GACATTTCACAGTCATCTGATTTAATGTCCCTTGACCGGATTGTCCACCG,"Intron (Mctp1-204/Mctp1, intron 9 of 20)",13,76384535,77031810,647276,1,Mctp1-204,419286,Mctp1-204;Mctp1-201;Mctp1-206,Mctp1;Mctp1;Mctp1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,20,78771,ENSMUSG00000021596,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14449,cg02749789.1,-0.00000302,0.00000163,-1.850977201,0.065123893,loss,ns,0.00000589,0.00000277,2.12388798,0.034471042,pos,ns,0.000863443,0.000812259,1.063014196,0.288602878,pos,ns,0.539699342,0.0000262,0.0000279,0.938971383,0.348476453,pos,ns,0.046216869,Ywhae,Ywhae_fiveUTR,11,75732852,75732901,75732900,75732901,50,+,CCAGTTGCCAGGGAGCGGTTGCCATAGAGCTGAGCAGTTGTCCGCGTGCG,Promoter (<=1kb),11,75732869,75765845,32977,1,Ywhae-201,0,Ywhae-201;Ywhae-203;Ywhae-204;Ywhae-202,Ywhae;Ywhae;Ywhae;Ywhae,0;0;0;-247,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,9,9,22627,ENSMUSG00000020849,conserved gene but different region,11,75732561,75733672,1112,*,1112,119,0.701438849,0.881745794,0.107014389,6.96E-94,CpGisland,TRUE,NA,NRS
12139,cg07666807,-0.00000191,0.00000379,-0.503097048,0.615253297,loss,ns,-0.0000137,0.00000644,-2.123718438,0.034485342,neg,ns,-0.002978717,0.001887279,-1.578312955,0.115513567,neg,ns,0.937367006,0.0000373,0.0000649,0.574723736,0.565894993,pos,ns,0.923424982,Ino80d,Ino80d_fiveUTR,1,63093403,63093452,63093403,63093404,50,+,CGTAGCCGTTGAGTCGCCTCTGCTTGCACAGTTTGGGGCTATATGAGCAC,5' UTR,1,63047801,63114267,66467,2,Ino80d-205,20815,Ino80d-202;Ino80d-205;Ino80d-206;Ino80d-201;Ino80d-203;Ino80d-204,Ino80d;Ino80d;Ino80d;Ino80d;Ino80d;Ino80d,0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,9,12,227195,ENSMUSG00000040865,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7901,cg26544848,0.0000048,0.00000318,1.507853911,0.132610328,gain,ns,-0.0000115,0.00000541,-2.12361765,0.034493846,neg,ns,-0.001461673,0.001584188,-0.92266419,0.356899781,neg,ns,0.447453719,-0.00000326,0.0000545,-0.059880992,0.952289003,neg,ns,0.888078277,Ebf1,Ebf1_Intron,11,44626208,44626257,44626208,44626209,50,+,CGGAGCCAGATGGCCTAGTACTTCCCCAGTCTGGCGGGCCAACTGCTCCC,"Intron (Ebf1-203/Ebf1, intron 4 of 15)",11,44617317,45004995,387679,1,Ebf1-203,8891,Ebf1-203;Ebf1-202;Ebf1-201;Ebf1-207;Ebf1-204;Ebf1-205,Ebf1;Ebf1;Ebf1;Ebf1;Ebf1;Ebf1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,80,13591,ENSMUSG00000057098,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9320,cg13526159,-0.0000244,0.0000109,-2.24968637,0.025170183,loss,ns,-0.0000391,0.0000184,-2.123461676,0.034507009,neg,ns,-0.013023812,0.005400953,-2.411391577,0.01647293,neg,ns,1.783229152,0.000114936,0.000185738,0.61880608,0.536498555,pos,ns,0.583809693,Nxpe4,Nxpe4_Intron,9,48140764,48140813,48140764,48140765,50,-,CGCAGCTCCTGCCCAGGCCTCATTTAGATTTCTTGTTTGTAGCAATAATA,"Intron (Gm40518-201/Gm40518-201, intron 1 of 2)",9,48162023,48399871,237849,1,Nxpe4-203,-21259,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,7,244853,ENSMUSG00000044229,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8663,cg21437713,0.0000467,0.0000298,1.567595915,0.117995623,gain,ns,0.000107465,0.0000506,2.123278381,0.034522483,pos,ns,0.014870456,0.014827849,1.002873451,0.316704081,pos,ns,0.49934634,0.000407044,0.000509929,0.79823783,0.425343558,pos,ns,0.304287197,Col5a2,Col5a2_fiveUTR,1,45503063,45503112,45503063,45503064,50,-,CGAAAACTTTTTTCAAGCGATGCAGCTTTAAATAGGAAGAATGCTGCCTC,Promoter (<=1kb),1,45374321,45503282,128962,2,Col5a2-201,170,Col5a2-201;Col5a2-203,Col5a2;Col5a2,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,4,12832,ENSMUSG00000026042,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3032,cg14691624,-0.000000106,0.0000135,-0.007890358,0.993709546,loss,ns,-0.0000486,0.0000229,-2.123023484,0.034544012,neg,ns,0.001793042,0.006704527,0.267437443,0.789310212,pos,ns,0.102752278,-0.0000346,0.000230568,-0.150251567,0.880663856,neg,ns,0.10757775,Trpm3,Trpm3_Exon,19,22448104,22448153,22448152,22448153,50,+,GCAGCAGGCAGTGTGCCTCCATTCAGCCACATTTGGTATGCATGAGCACG,"Exon (Gm27151-201/Gm27151-201, exon 1 of 2)",19,22139046,22995410,856365,1,Trpm3-218,309058,Trpm3-218;Trpm3-202;Trpm3-203;Trpm3-213;Trpm3-222;Trpm3-207;Trpm3-209;Trpm3-214;Trpm3-216;Trpm3-223;Trpm3-224;Trpm3-201,Trpm3;Trpm3;Trpm3;Trpm3;Trpm3;Trpm3;Trpm3;Trpm3;Trpm3;Trpm3;Trpm3;Trpm3,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,12,226025,ENSMUSG00000052387,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8307,cg20743454,0.000000247,0.000003,0.082500364,0.934302072,gain,ns,0.0000108,0.00000509,2.122954976,0.0345498,pos,ns,0.002228225,0.001491732,1.493716577,0.136266824,pos,ns,0.865609865,-0.0000153,0.0000513,-0.298999814,0.765140531,neg,ns,0.962909103,Zeb2,Zeb2_Exon,2,44994599,44994648,44994599,44994600,50,-,CGGAGTCTGTCATATCATCTAGGCCTGACATGTAGTCTTGTGCTCCATCA,"Exon (Zeb2-212/Zeb2, exon 10 of 11)",2,44983632,45117395,133764,2,Zeb2-212,122747,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,21,158,24136,ENSMUSG00000026872,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7782,cg12387075,-0.000000657,0.00000278,-0.236437285,0.813249515,loss,ns,0.00001,0.00000472,2.122774383,0.034565062,pos,ns,0.004099363,0.001382186,2.965854353,0.003252964,pos,ns,2.487720799,-0.0000395,0.0000475,-0.831934978,0.406086034,neg,ns,0.93074172,Arhgap15,Arhgap15_Intron,2,44304725,44304774,44304773,44304774,50,+,GAGGATTTTGGCTGATTGATATAAATAACATCGTCCCCGCCATCTGTCCG,"Intron (Arhgap15-203/Arhgap15, intron 12 of 14)",2,43748824,44395953,647130,1,Arhgap15-203,555901,Arhgap15-203;Arhgap15-202;Arhgap15-201,Arhgap15;Arhgap15;Arhgap15,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,72,78,76117,ENSMUSG00000049744,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17085,cg26046953,0.0000072,0.00000129,5.570392103,5.52E-08,gain,yes,-0.00000466,0.0000022,-2.122719357,0.034569713,neg,ns,-0.001491383,0.000643716,-2.31683528,0.021164214,neg,ns,1.67439786,0.0000599,0.0000221,2.706293642,0.007180701,pos,ns,0.981159943,Msi2,Msi2_Exon,11,88348834,88348883,88348882,88348883,50,-,TGTAATTCCCCACTCCGGAGTCCTGGCTGGCAGGGCCGTAGAGATCGGCG,"Exon (Msi2-203/Msi2, exon 12 of 14)",11,88339382,88718229,378848,2,Msi2-203,369346,Msi2-203;Msi2-201,Msi2;Msi2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,36,76626,ENSMUSG00000069769,conserved gene and region,11,88348768,88348968,201,*,201,21,0.696517413,0.87012987,0.104477612,9.68E-17,CpGisland,TRUE,U11,Tr-P
20110,cg11672287,0.0000592,0.00000898,6.593390088,1.85E-10,gain,yes,-0.0000324,0.0000153,-2.122616079,0.034578445,neg,ns,0.002603795,0.004470604,0.582425733,0.560703317,pos,ns,0.251266874,0.0000306,0.000153744,0.199212026,0.842227491,pos,ns,0.460029196,Fzd2,Fzd2_Exon,11,102624388,102624437,102624388,102624389,50,-,CGCCCCAGACAGAGCCGGCTCTGAATTCTGGGAATGTTTGTGCAGCTGGA,"Exon (2810433D01Rik-202/2810433D01Rik-202, exon 1 of 4)",11,102604396,102608058,3663,1,Fzd2-201,20041,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,57265,ENSMUSG00000050288,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13932,cg09425215,-0.00000305,0.00000608,-0.501823841,0.616147656,loss,ns,-0.0000219,0.0000103,-2.122532629,0.034585502,neg,ns,-0.009212168,0.003024435,-3.045913542,0.002518955,neg,ns,2.598779537,0.000211842,0.00010401,2.036740812,0.042525414,pos,ns,0.063719863,Chd2,Chd2_fiveUTR,7,73541454,73541503,73541454,73541455,50,+,CGCACAAAAATGGAGGTGCGCCATGGCTTCTAAGCTGGAAAAAACAACGA,Promoter (<=1kb),7,73426638,73541746,115109,2,Chd2-203,243,Chd2-203;Chd2-201;Chd2-204;Chd2-207;Chd2-208;Chd2-216;Chd2-214,Chd2;Chd2;Chd2;Chd2;Chd2;Chd2;Chd2,0;0;-3833;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,16,244059,ENSMUSG00000078671,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
13906,cg20220261,0.0000237,0.00000832,2.852595108,0.004627851,gain,ns,0.00003,0.0000141,2.122393897,0.034597236,pos,ns,0.006123239,0.004138555,1.479559677,0.140006267,pos,ns,0.853852524,-0.000051,0.000142325,-0.358132916,0.720487587,neg,ns,0.102751034,Sp9,Sp9_Intron,2,73279990,73280039,73280038,73280039,50,+,TACATCCAAATTACATGCTAATTAAATTAGAATCAAATCGTTCTAAATCG,"Intron (Sp9-202/Sp9, intron 1 of 2)",2,73271966,73284706,12741,1,Sp9-202,8024,Cir1-201;Cir1-202;Sp9-201;Sp9-202,Cir1;Cir1;Sp9;Sp9,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,21,381373,ENSMUSG00000068859,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
24114,cg24957806,-0.0000134,0.000012,-1.116415395,0.265108951,loss,ns,0.0000433,0.0000204,2.122369036,0.034599339,pos,ns,-0.004217334,0.00597431,-0.70591142,0.480773372,neg,ns,0.318059594,0.0000153,0.000205456,0.074327411,0.940797805,pos,ns,0.554858361,Cacng3,Cacng3_fiveUTR,7,122671751,122671800,122671751,122671752,50,+,CGTCCAGAGTACCATGAAGAATTATGAGGATGTGTGACAGAGGTATCCAG,5' UTR,7,122670492,122769393,98902,1,Cacng3-201,1259,Cacng3-201;Cacng3-203;Cacng3-202,Cacng3;Cacng3;Cacng3,0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,2,54376,ENSMUSG00000066189,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16872,cg15127930,-0.00000245,0.00000663,-0.369232643,0.712206398,loss,ns,0.0000239,0.0000113,2.122302532,0.034604966,pos,ns,0.011681614,0.003300745,3.539084512,0.000463024,pos,ns,3.334396382,-0.000425568,0.000113512,-3.749093276,0.000211698,neg,ns,0.876827166,Ythdc1,Ythdc1_threeUTR,5,86831750,86831799,86831798,86831799,50,+,GTTTATGAATTACCTGAATTTAGTTTCACAAATCTTATTCCCAACAGACG,Promoter (<=1kb),5,86831763,86836657,4895,1,Ythdc1-204,0,Ythdc1-202;Ythdc1-203;Ythdc1-208;Ythdc1-201;Ythdc1-207;Ythdc1-206;Ythdc1-205;Ythdc1-204,Ythdc1;Ythdc1;Ythdc1;Ythdc1;Ythdc1;Ythdc1;Ythdc1;Ythdc1,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,12,17,231386,ENSMUSG00000035851,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3668,cg06296372,0.0000362,0.00000767,4.727671217,0.00000345,gain,ns,-0.0000276,0.000013,-2.122090744,0.034622889,neg,ns,-0.004986324,0.003815861,-1.30673626,0.192270857,neg,ns,0.716086539,0.000196514,0.000131227,1.497514138,0.135277022,pos,ns,0.870432731,Erfl,Erfl_Promoter,7,24953454,24953503,24953454,24953455,50,-,CGCCCTCCCTGATGACAATGCTGTCTGCGCAAACTTTAATTAACACTTTG,Promoter (9-10kb),7,24927445,24944494,17050,2,Erfl-201,-9009,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,29,36,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
18847,cg27492942,-0.000125947,0.0000139,-9.092158781,1.19E-17,loss,yes,-0.0000499,0.0000235,-2.122059537,0.034625531,neg,ns,0.035698255,0.006894427,5.177841778,0.000000405,pos,ns,6.392994743,-0.001572052,0.000237099,-6.63036745,1.49E-10,neg,yes,0.557600829,Mllt6,Mllt6_threeUTR,11,97685376,97685425,97685376,97685377,50,+,CGGATGTTATTTGTACGAAGGGCAGTTCGTAAACAGCACTTGTTCTTTTA,3' UTR,11,97663414,97685463,22050,1,Mllt6-201,21962,Cisd3-202;Cisd3-203;Cisd3-201;Cisd3-204;Mllt6-201;Mllt6-206;Mllt6-202;Pcgf2-207;Pcgf2-206;Pcgf2-203;Pcgf2-202;Pcgf2-201,Cisd3;Cisd3;Cisd3;Cisd3;Mllt6;Mllt6;Mllt6;Pcgf2;Pcgf2;Pcgf2;Pcgf2;Pcgf2,-401;-418;-528;-552;0;0;0;13959;14223;6982;14216;15072,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,4,246198,ENSMUSG00000038437,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17305,cg19644023,-0.00000918,0.00000711,-1.290948354,0.197683466,loss,ns,-0.0000256,0.0000121,-2.121646058,0.034660549,neg,ns,-0.000833106,0.003539217,-0.235392772,0.81405932,neg,ns,0.089343947,0.0000858,0.000121713,0.70516392,0.481237723,pos,ns,0.92919532,Gm5356,Gm5356_Intergenic_upstream,8,89566998,89567047,89567046,89567047,50,+,TTCCCATCACCCCGAAAAAAATCCATAACTTTTGCATTTTAATAGAGACG,Distal Intergenic,8,89186946,89187560,615,2,Gm5356-201,-379438,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,23,23,384862,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18087,cg10927578,-0.00000322,0.00000605,-0.53181124,0.595237631,loss,ns,-0.0000218,0.0000103,-2.121426753,0.034679135,neg,ns,-0.007853257,0.003010972,-2.608213598,0.009542396,neg,ns,2.020342566,0.000190968,0.000103547,1.844258716,0.066099473,pos,ns,0.85168622,Magi1,Magi1_threeUTR,6,93708003,93708052,93708003,93708004,50,+,CGTCGGTTTTCATACATGCTCCTGGACTGGGCCCAGATTTTAAAAGGATC,3' UTR,6,93675455,94283322,607868,2,Magi1-201,575270,Magi1-201;Magi1-202;Magi1-208;Magi1-203;Magi1-206;Magi1-209;Magi1-205,Magi1;Magi1;Magi1;Magi1;Magi1;Magi1;Magi1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,18,14924,ENSMUSG00000045095,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20863,cg00469450,-0.00000373,0.000004,-0.933188507,0.351448905,loss,ns,0.0000144,0.00000679,2.120734832,0.034737829,pos,ns,0.007415528,0.001989842,3.72669235,0.000230527,pos,ns,3.63727771,-0.000211809,0.0000684,-3.095240731,0.00214598,neg,ns,0.913288846,Ctcf,Ctcf_Exon,8,105671326,105671375,105671326,105671327,50,-,CGGTTTACCCAAAGTGGTACCATGAAGATGCACATTTTACAGAAGCACAC,"Exon (Ctcf-204/Ctcf, exon 5 of 10)",8,105636568,105681647,45080,1,Ctcf-204,34758,Ctcf-204;Ctcf-201;Ctcf-205;Ctcf-206,Ctcf;Ctcf;Ctcf;Ctcf,0;0;-4636;-4636,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,8,13018,ENSMUSG00000005698,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8273,cg01546670,0.0000113,0.00000485,2.327060062,0.020605955,gain,ns,-0.0000175,0.00000825,-2.120651276,0.034744923,neg,ns,0.001454715,0.002415724,0.602185735,0.547490702,pos,ns,0.261623252,-0.000053,0.0000831,-0.637968378,0.523965225,neg,ns,0.881505064,Ap2a1,Ap2a1_Exon,7,44915923,44915972,44915971,44915972,50,-,CCAGGCACATGAAGGTGGGGTTGCGGCTGGCCAGGTCATTCTTGATGGCG,"Exon (Ap2a1-203/Ap2a1, exon 4 of 24)",7,44900373,44929496,29124,2,Ap2a1-203,13524,Ap2a1-203;Ap2a1-201;Ap2a1-204;Ap2a1-202;Ap2a1-205;Ap2a1-208;Ap2a1-210;Ap2a1-207,Ap2a1;Ap2a1;Ap2a1;Ap2a1;Ap2a1;Ap2a1;Ap2a1;Ap2a1,0;0;0;0;0;13494;12671;762,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,11771,ENSMUSG00000060279,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16575,cg21270601,-0.00000412,0.00000419,-0.984102619,0.325832492,loss,ns,0.0000151,0.00000711,2.120443477,0.03476257,pos,ns,0.00505043,0.00208312,2.424454636,0.015902903,pos,ns,1.798523602,-0.000144297,0.0000716,-2.014242626,0.04484752,neg,ns,0.907998654,Gm9264,Gm9264_Intergenic_downstream,14,85506627,85506676,85506627,85506628,50,+,CGCTGATAGCTTCTTTCAACTGGTGAGAGGACTAATCATCTTATGCAAAT,Distal Intergenic,14,85479026,85479533,508,1,Gm9264-201,27601,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,2,668603,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12706,cg21159131,0.0000167,0.00000503,3.321095908,0.00100378,gain,ns,-0.0000181,0.00000854,-2.120370888,0.034768736,neg,ns,-0.005457602,0.002503061,-2.180371217,0.029981711,neg,ns,1.523143584,0.000175459,0.0000861,2.038321533,0.042366177,pos,ns,0.904086444,Ptprm,Ptprm_Exon,17,66912416,66912465,66912416,66912417,50,+,CGATTATCGCAGCTAAGGCAAAGGAGGATTTCCAGGTCAGCATGCATGAG,"Exon (Ptprm-201/Ptprm, exon 14 of 33)",17,66666947,67354073,687127,2,Ptprm-201,441608,Ptprm-201;Ptprm-202;Ptprm-203;Ptprm-207,Ptprm;Ptprm;Ptprm;Ptprm,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,5,19274,ENSMUSG00000033278,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8402,cg03093554,0.0000643,0.00000894,7.186387575,4.99E-12,gain,yes,-0.0000322,0.0000152,-2.120120859,0.034789983,neg,ns,0.009581279,0.00444996,2.153115957,0.032080697,pos,ns,1.493756209,0.00000254,0.000153034,0.016577539,0.986784307,pos,ns,0.511064426,Zeb2,Zeb2_threeUTR,2,45095960,45096009,45096008,45096009,50,+,GCTTAACAAAACTGTGCCGTCACACCACTTTAGTTCAACAGTGCCTGTCG,3' UTR,2,44983632,45117395,133764,2,Zeb2-212,21386,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219;Zeb2-211,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,10,158,24136,ENSMUSG00000026872,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16503,cg00918383,-0.0000156,0.0000219,-0.71298465,0.4763916,loss,ns,0.0000788,0.0000372,2.120055378,0.034795549,pos,ns,0.094083957,0.010887649,8.64134725,3.01E-16,pos,yes,15.52185698,-0.002810619,0.000374425,-7.506487206,6.50E-13,neg,yes,0.518776878,Fbln1,Fbln1_Exon,15,85232579,85232628,85232579,85232580,50,+,CGATTTTATCTGTCAGAATACTCTGGGATCCTTCCGCTGCCGACCCAAGC,"Exon (Fbln1-201/Fbln1, exon 8 of 17)",15,85205949,85286535,80587,1,Fbln1-201,26630,Fbln1-201;Fbln1-202,Fbln1;Fbln1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,14114,ENSMUSG00000006369,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
752,cg04606307,-0.000000754,0.00000472,-0.159677745,0.87323892,loss,ns,-0.000017,0.00000802,-2.119463721,0.034845877,neg,ns,0.000278963,0.002349189,0.118748596,0.905551445,pos,ns,0.043086872,-0.0000197,0.0000808,-0.243926331,0.807449227,neg,ns,0.904834624,Rundc3b,Rundc3b_Exon,5,8512285,8512334,8512285,8512286,50,+,CGGTAAAGCAACGTATCCAAGGCAACAGCATTGACATCCAGAGCTCCTGG,"Exon (Rundc3b-202/Rundc3b, exon 9 of 11)",5,8490334,8622952,132619,2,Rundc3b-201,110618,Rundc3b-201;Rundc3b-202,Rundc3b;Rundc3b,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,242819,ENSMUSG00000040570,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25981,cg17434678,-0.0000146,0.00000373,-3.92668902,0.000106179,loss,ns,0.0000134,0.00000634,2.118717334,0.034909457,pos,ns,0.002250851,0.001856885,1.212164988,0.226372271,pos,ns,0.645176773,-0.0000384,0.0000639,-0.601200522,0.548145787,neg,ns,0.067063585,Cmas,Cmas_Exon,6,142756927,142756976,142756975,142756976,50,+,GCAGCAAAGGCATCCCCCTGAAGAACATTAAGCACCTGGCGGGGGTCCCG,Promoter (<=1kb),6,142756686,142775714,19029,1,Cmas-201,241,Cmas-201;Cmas-202;Cmas-203;Cmas-205,Cmas;Cmas;Cmas;Cmas,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,12764,ENSMUSG00000030282,conserved gene and region,6,142756564,142757188,625,*,625,66,0.736,0.792370195,0.1056,6.03E-52,CpGisland,TRUE,U1,Pr-A
21360,cg19438969,0.0000117,0.00000546,2.139247393,0.0331965,gain,ns,0.0000197,0.00000928,2.11869905,0.034911016,pos,ns,0.002645561,0.002718676,0.97310654,0.33125904,pos,ns,0.479832262,-0.00002,0.0000935,-0.214144575,0.830575101,neg,ns,0.877319422,Slc6a17,Slc6a17_Exon,3,107473534,107473583,107473582,107473583,50,-,ACTTCTTGGTTCCATAAATCCAGGCCACAGCGATGTTCTCAAGGATGACG,"Exon (Slc6a17-208/Slc6a17, exon 10 of 12)",3,107467543,107518018,50476,2,Slc6a17-208,44435,Slc6a17-208;Slc6a17-201;Slc6a17-206;Slc6a17-210,Slc6a17;Slc6a17;Slc6a17;Slc6a17,0;0;0;-4829,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,229706,ENSMUSG00000027894,conserved gene and region,3,107473564,107473716,153,*,153,10,0.549019608,0.885416667,0.065359477,0.00000333,CpGisland,TRUE,NA,NRS
5958,cg21999756,-0.0000189,0.0000113,-1.671685876,0.095595323,loss,ns,0.0000407,0.0000192,2.118681321,0.034912527,pos,ns,0.000244493,0.005626721,0.043452094,0.965369127,pos,ns,0.015306594,0.000167558,0.000193502,0.865919774,0.387203817,pos,ns,0.733457632,Dab2ip,Dab2ip_fiveUTR,2,35558478,35558527,35558478,35558479,50,-,CGCCAGATGGAATACAAAAGGAGGAACCCAGACGCTCATGGAGACAGCCT,Promoter (<=1kb),2,35558266,35730994,172729,1,Dab2ip-205,212,Dab2ip-205,Dab2ip,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,12,69601,ENSMUSG00000026883,conserved gene and region,2,35558478,35558626,149,*,149,12,0.651006711,0.760204082,0.080536913,0.000000023,CpGisland,TRUE,NA,NRS
15171,cg05124869,0.00002,0.0000109,1.835908383,0.067328845,gain,ns,0.0000393,0.0000185,2.11831679,0.034943617,pos,ns,0.012652808,0.005429823,2.330243216,0.020434813,pos,ns,1.689629325,-0.000296596,0.000186731,-1.588358301,0.113224702,neg,ns,0.298588347,Kcnj4,Kcnj4_Intron,15,79502994,79503043,79502994,79502995,50,-,CGTGAGCCAAATTTGGCATCCTAGGGGGAGAGGCATGAAAAGTGGAGATG,"Intron (Kcnj4-201/Kcnj4, intron 1 of 1)",15,79483714,79505241,21528,2,Kcnj4-201,2198,Kcnj4-201,Kcnj4,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,9,16520,ENSMUSG00000044216,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
7755,cg07786007,-0.0000245,0.0000103,-2.377141009,0.018053986,loss,ns,-0.0000371,0.0000175,-2.118300958,0.034944968,neg,ns,-0.010732207,0.005136154,-2.089541501,0.037473923,neg,ns,1.426270834,0.000392005,0.000176632,2.219333256,0.027187638,pos,ns,0.873663918,Arhgap15,Arhgap15_Intron,2,44146750,44146799,44146750,44146751,50,+,CGATGTCTGTTTAAAGAAACAAGGAGGCTGTTGGCTTTAAAATTCCCTCA,"Intron (Arhgap15-203/Arhgap15, intron 10 of 14)",2,43748824,44395953,647130,1,Arhgap15-203,397926,Arhgap15-203;Arhgap15-202;Arhgap15-201;Arhgap15-204,Arhgap15;Arhgap15;Arhgap15;Arhgap15,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,72,78,76117,ENSMUSG00000049744,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16583,cg25507917,-0.00000802,0.0000054,-1.486578159,0.138142587,loss,ns,0.0000194,0.00000917,2.118275114,0.034947173,pos,ns,-0.001652495,0.002685986,-0.61522852,0.538855181,neg,ns,0.268527937,0.000077,0.0000924,0.833124233,0.405416085,pos,ns,0.815140466,Wnt7b,Wnt7b_fiveUTR,15,85559068,85559117,85559116,85559117,50,+,CTAGGCCAGGAATCTTGTTGCAGATGATGTTGGCTCCCAGGGCCACCACG,5' UTR,15,85535437,85581582,46146,2,Wnt7b-202,22465,Wnt7b-202;Wnt7b-201;Wnt7b-205;Wnt7b-203;Wnt7b-204;Wnt7b-206,Wnt7b;Wnt7b;Wnt7b;Wnt7b;Wnt7b;Wnt7b,0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,7,22422,ENSMUSG00000022382,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1810,cg22533833,-0.0000033,0.00000247,-1.336503589,0.182364827,loss,ns,0.00000887,0.00000419,2.117806124,0.034987211,pos,ns,0.000889178,0.001227069,0.724635213,0.469222411,pos,ns,0.328621253,-0.0000431,0.0000422,-1.022335342,0.307419342,neg,ns,0.940610318,Foxp2,Foxp2_Intron,6,15396626,15396675,15396674,15396675,50,+,TGAATTGACCTGTTTTGACCTGTTTGTCACTGATCGTAACCTGACAGGCG,"Intron (Foxp2-207/Foxp2, intron 9 of 18)",6,14901349,15441977,540629,1,Foxp2-207,495277,Foxp2-207;Foxp2-213;Foxp2-205;Foxp2-204;Foxp2-201;Foxp2-210;Foxp2-214;Foxp2-209;Foxp2-202;Foxp2-206,Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,38,65,114142,ENSMUSG00000029563,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7948,cg11972460,0.0000355,0.00000679,5.232375154,0.000000309,gain,yes,-0.0000244,0.0000115,-2.117731902,0.034993551,neg,ns,-0.002351583,0.003378813,-0.695978999,0.486963433,neg,ns,0.31250365,0.000168109,0.000116197,1.446754161,0.148976163,pos,ns,0.862435951,Runx2,Runx2_threeUTR,17,44658592,44658641,44658592,44658593,50,+,CGGGACACCTACTCTCATACTGGGATGAGGAATGCGCCCTAAATCACTGA,3' UTR,17,44495987,44736176,240190,2,Runx2-212,77535,Runx2-212;Runx2-214;Runx2-203;Runx2-202;Runx2-213;Runx2-204;Runx2-210;Runx2-211;Runx2-207;Runx2-201;Runx2-209;Runx2-205;Runx2-206,Runx2;Runx2;Runx2;Runx2;Runx2;Runx2;Runx2;Runx2;Runx2;Runx2;Runx2;Runx2;Runx2,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,10,20,12393,ENSMUSG00000039153,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18498,cg17092784,-0.00000134,0.00000421,-0.317772729,0.75087128,loss,ns,0.0000151,0.00000714,2.117407526,0.035021271,pos,ns,0.004104948,0.002093233,1.9610563,0.050767429,pos,ns,1.294414833,-0.000101739,0.000072,-1.413313607,0.158566847,neg,ns,0.92454128,Cnot6l,Cnot6l_threeUTR,5,96098265,96098314,96098265,96098266,50,-,CGTTCTTTTAATGTAATCCATGGCCTCGGAGGAAGCTGCTCTGGATGAAC,3' UTR,5,96070333,96161990,91658,2,Cnot6l-210,63676,Cnot6l-210;Cnot6l-201;Cnot6l-202;Cnot6l-203,Cnot6l;Cnot6l;Cnot6l;Cnot6l,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,11,13,231464,ENSMUSG00000034724,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5118,cg26076856,-0.0000353,0.0000101,-3.498276949,0.000536801,loss,ns,0.0000363,0.0000171,2.117275532,0.035032556,pos,ns,-0.002235566,0.005018675,-0.445449385,0.656305938,neg,ns,0.182893666,0.0000555,0.000172592,0.32166436,0.747923763,pos,ns,0.731095139,Plxna4,Plxna4_Intron,6,32363719,32363768,32363767,32363768,50,+,TCTTCTGCCAGAGCCATGTGCTTGTTTATTTTTACTACATTTTTATGACG,"Intron (Plxna4-201/Plxna4, intron 3 of 31)",6,32144268,32588192,443925,2,Plxna4-201,224424,Plxna4-201,Plxna4,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,9,243743,ENSMUSG00000029765,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5396,cg11035838,-0.00000703,0.00000814,-0.863639578,0.388453621,loss,ns,0.0000293,0.0000138,2.117186946,0.035040131,pos,ns,0.003010045,0.004053365,0.742604105,0.458283731,pos,ns,0.33886556,-0.000413525,0.000139395,-2.966573302,0.00324558,neg,ns,0.652759094,Kcnip1,Kcnip1_Intron,11,33786733,33786782,33786733,33786734,50,-,CGTCACTAATTGGCAGGCAGAGGCTGTGTTCTCTCTGTGGGAATCAGAAG,"Intron (Kcnip1-202/Kcnip1, intron 1 of 7)",11,33629339,33843461,214123,2,Kcnip1-202,56679,Kcnip1-202;Kcnip1-201;Kcnip1-203;Kcnip1-207;Kcnip1-205;Kcnip1-204,Kcnip1;Kcnip1;Kcnip1;Kcnip1;Kcnip1;Kcnip1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,4,70357,ENSMUSG00000053519,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2153,cg21525047,-0.00000117,0.00000997,-0.117699473,0.906382007,loss,ns,0.0000359,0.0000169,2.117097899,0.035047747,pos,ns,0.000542593,0.004962658,0.109335186,0.91300738,pos,ns,0.039525712,0.000176133,0.000170665,1.032039864,0.302857922,pos,ns,0.877622902,Pou6f2,Pou6f2_threeUTR,13,18125469,18125518,18125469,18125470,50,-,CGATGGCGGGCCTCAGCCTCAGCCATCCACCGCTCAAGCACCGGCTTGAT,3' UTR,13,18121098,18382041,260944,2,Pou6f2-201,256523,Pou6f2-201;Pou6f2-202;Pou6f2-204,Pou6f2;Pou6f2;Pou6f2,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,7,18,218030,ENSMUSG00000009734,conserved gene and region,13,18125393,18125511,119,*,119,9,0.588235294,0.885856079,0.075630252,0.00000392,CpGisland,TRUE,U15,NS
12725,cg19474147,0.0000129,0.0000025,5.16762522,0.000000426,gain,yes,-0.00000899,0.00000425,-2.116916341,0.035063281,neg,ns,0.001339669,0.001243651,1.077206942,0.28222537,pos,ns,0.549403949,-0.000104452,0.0000428,-2.442223393,0.015155539,neg,ns,0.083832285,Rsrc1,Rsrc1_fiveUTR,3,66981487,66981536,66981535,66981536,50,+,TGATCGCCTCCTTCTTCTCCTTCACTTTCTGGTCAAAAGACTTGGAGACG,Promoter (<=1kb),3,66981390,67356559,375170,1,Rsrc1-206,97,Rsrc1-206;Rsrc1-207;Rsrc1-203;Rsrc1-208;Rsrc1-202;Rsrc1-201;Rsrc1-209;Rsrc1-205;Rsrc1-204;Shox2-203;Shox2-201;Shox2-202;Shox2-204;Shox2-205,Rsrc1;Rsrc1;Rsrc1;Rsrc1;Rsrc1;Rsrc1;Rsrc1;Rsrc1;Rsrc1;Shox2;Shox2;Shox2;Shox2;Shox2,0;-4134;0;0;0;0;0;0;-4442;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,37,66880,ENSMUSG00000034544,conserved gene and region,3,66981535,66981613,79,*,79,13,0.70886076,1.426388889,0.164556962,2.70E-13,CpGisland,TRUE,U3,Pr-B
6991,cg21117100,-0.0000225,0.00000842,-2.673226064,0.007910386,loss,ns,0.0000303,0.0000143,2.116910853,0.03506375,pos,ns,0.010709592,0.004189505,2.556290612,0.011055976,pos,ns,1.956402928,-0.000413116,0.000144077,-2.86733209,0.004423081,neg,ns,0.832213974,Ofcc1,Ofcc1_Intergenic_upstream,13,40415032,40415081,40415032,40415033,50,+,CGTTAATTACCAGAGACAAGTGTTAATGGATTTTAATTTTGCTTTATTAG,Distal Intergenic,13,40279889,40361450,81562,2,Ofcc1-202,-53582,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,8,218165,ENSMUSG00000047094,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4158,cg13359227,-0.0000347,0.00000598,-5.809758557,1.55E-08,loss,yes,-0.0000215,0.0000102,-2.116416311,0.035106091,neg,ns,-0.013614247,0.002974063,-4.577659396,0.00000681,neg,ns,5.1665634,0.000274389,0.000102278,2.682784093,0.007692903,pos,ns,0.873452441,Zfp703,Zfp703_Intergenic_downstream,8,26994233,26994282,26994281,26994282,50,-,GAAAACCCTTCTTGAAAGATCTTGAAAGGAGCTGGCAGTTCAGCCGCCCG,Distal Intergenic,8,26978185,26978692,508,1,Zfp703-203,16097,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,11,353310,ENSMUSG00000085795,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11904,cg12942678,-0.00000384,0.0000045,-0.851611253,0.39508727,loss,ns,0.0000162,0.00000765,2.116348324,0.035111916,pos,ns,0.006665326,0.00224142,2.973706908,0.003173145,pos,ns,2.498510075,-0.000236432,0.0000771,-3.067271899,0.002350691,neg,ns,0.917391788,Tank,Tank_threeUTR,2,61650274,61650323,61650274,61650275,50,-,CGAGGACCACAGCAGGTAACTGTTTTGCATTAACAAATATATTATTATGT,3' UTR,2,61578585,61654171,75587,1,Tank-205,71689,Tank-205;Tank-201;Tank-206;Tank-203;Tank-204;Tank-202;Tank-208;Tank-209;Tank-211,Tank;Tank;Tank;Tank;Tank;Tank;Tank;Tank;Tank,0;0;0;0;0;0;0;22553;6443,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,TRUE,FALSE,threeUTR,1,17,21353,ENSMUSG00000064289,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3159,cg01352789,0.00006,0.00000664,9.02400914,1.95E-17,gain,yes,-0.0000239,0.0000113,-2.116283014,0.035117511,neg,ns,0.002939977,0.003307159,0.888973476,0.374706621,pos,ns,0.426308633,0.000057,0.000113733,0.501484798,0.616385913,pos,ns,0.109426324,Nol4,Nol4_Exon,18,23039969,23040018,23040017,23040018,50,-,GTCTTGCCTGAGTCCCCGTAAGTCCTGAGGCACCAGTCCTGGAACTGGCG,"Exon (Nol4-204/Nol4, exon 1 of 10)",18,22693634,23041653,348020,2,Nol4-204,1635,Nol4-202;Nol4-204;Nol4-208;Nol4-206;Nol4-209,Nol4;Nol4;Nol4;Nol4;Nol4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,16,21,319211,ENSMUSG00000041923,conserved gene and region,18,23039723,23040174,452,*,452,35,0.595132743,0.893280632,0.077433628,6.56E-23,CpGisland,TRUE,U13,Hc-P
1061,cg19821273,-0.00000517,0.00000134,-3.852048541,0.000142347,loss,ns,0.00000483,0.00000228,2.11598981,0.035142642,pos,ns,0.000596573,0.000668375,0.892573042,0.372778192,pos,ns,0.428549502,-0.0000163,0.000023,-0.707092979,0.480039881,neg,ns,0.9622688,Esrp1,Esrp1_Exon,4,11357476,11357525,11357476,11357477,50,+,CGGTGGGGATAAGCCATTTCGATTTAAAGTGCCCCCCATTAACACAAAGT,"Exon (Esrp1-201/Esrp1, exon 12 of 15)",4,11331933,11386679,54747,2,Esrp1-201,29154,Esrp1-201;Esrp1-204;Esrp1-203;Esrp1-206;Esrp1-202;Esrp1-207,Esrp1;Esrp1;Esrp1;Esrp1;Esrp1;Esrp1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,207920,ENSMUSG00000040728,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5419,cg12208019,0.0000705,0.0000116,6.094704462,3.25E-09,gain,yes,0.0000416,0.0000196,2.115757591,0.035162557,pos,ns,0.018493189,0.005754065,3.213934485,0.00144718,pos,ns,2.839477434,-0.000294662,0.000197882,-1.48908254,0.137482247,neg,ns,0.475382931,Gm27165,Gm27165_Intergenic_upstream,9,33901754,33901803,33901802,33901803,50,-,ACACACCAGGGAGTGAATGAAACAGCTGTCACATTTAAACACACACAGCG,Distal Intergenic,9,33931644,33931875,232,1,Gm27165-201,-29890,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5783,cg24646217,-0.00000999,0.00000562,-1.776141224,0.076690444,loss,ns,0.0000202,0.00000955,2.115593847,0.035176606,pos,ns,-0.000631935,0.002798973,-0.225773841,0.821526099,neg,ns,0.085378635,0.000000448,0.0000963,0.004658833,0.996285799,pos,ns,0.562985804,Gapvd1,Gapvd1_Exon,2,34730598,34730647,34730598,34730599,50,-,CGTTCCTGCTTGAGGTGATGAGCCAGAGTATGAATATCTAGTTTCACCAT,"Exon (Gapvd1-202/Gapvd1, exon 3 of 27)",2,34674594,34755232,80639,2,Gapvd1-202,24585,Gapvd1-202;Gapvd1-201;Gapvd1-203;Gapvd1-208;Gapvd1-205;Gapvd1-214;Gapvd1-210,Gapvd1;Gapvd1;Gapvd1;Gapvd1;Gapvd1;Gapvd1;Gapvd1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,66691,ENSMUSG00000026867,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15975,cg20318739,0.000054,0.00000735,7.355584493,1.71E-12,gain,yes,-0.0000264,0.0000125,-2.115548363,0.035180509,neg,ns,0.002862166,0.003656613,0.782736907,0.434379142,pos,ns,0.362131037,0.000223831,0.000125751,1.77995948,0.076062059,pos,ns,0.84851289,Tshz1,Tshz1_Intron,18,84078858,84078907,84078858,84078859,50,+,CGACTTACAATGATGAAAGTGTTTTGAACCATAGTCTCGTAGAAGATTGT,"Intron (Tshz1-201/Tshz1, intron 1 of 1)",18,84011627,84086404,74778,2,Tshz1-201,7497,Tshz1-201;Tshz1-202;Tshz1-203;Tshz1-204,Tshz1;Tshz1;Tshz1;Tshz1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,18,110796,ENSMUSG00000046982,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5613,cg02354041,-0.00000158,0.00000149,-1.058828139,0.290502381,loss,ns,0.00000535,0.00000253,2.115402889,0.035192995,pos,ns,0.002013654,0.00074127,2.716491753,0.006968242,pos,ns,2.156876779,-0.0000624,0.0000255,-2.446372858,0.014985552,neg,ns,0.968943939,Pbx3,Pbx3_Intron,2,34356942,34356991,34356942,34356943,50,-,CGGCCAATAAGAATTATTTGCCTTATTAAAGCAGCAGAAGACGCTGATTA,"Intron (Pbx3-202/Pbx3, intron 2 of 7)",2,34171457,34372038,200582,2,Pbx3-202,15047,Pbx3-202;Pbx3-201;Pbx3-206;Pbx3-207;Pbx3-209;Pbx3-204;Pbx3-205;Pbx3-203,Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,82,18516,ENSMUSG00000038718,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14150,cg05749574,0.0000916,0.000015,6.099395388,3.17E-09,gain,yes,-0.000054,0.0000255,-2.11517946,0.035212179,neg,ns,0.021970785,0.00747542,2.939070321,0.003539239,pos,ns,2.45109006,-0.000244055,0.000257079,-0.949339438,0.3431875,neg,ns,0.424640651,Birc6,Birc6_threeUTR,17,74702420,74702469,74702420,74702421,50,-,CGAAGCACAAGCCAAATATGTCAATATTTGTATGTAAGAAACTAATTATG,3' UTR,17,74528295,74703356,175062,1,Birc6-202,174125,Birc6-202;Birc6-204;Birc6-213;Birc6-218;Birc6-220;Birc6-221;Birc6-206,Birc6;Birc6;Birc6;Birc6;Birc6;Birc6;Birc6,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,threeUTR,4,10,12211,ENSMUSG00000024073,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9627,cg21657112,0.00000838,0.00000342,2.452503067,0.01473751,gain,ns,-0.0000123,0.00000581,-2.115167884,0.035213173,neg,ns,-0.007172772,0.001701489,-4.215584805,0.0000327,neg,ns,4.48514968,0.0000634,0.0000585,1.08269606,0.279784782,pos,ns,0.822085617,Nav2,Nav2_Exon,7,49585174,49585223,49585174,49585175,50,-,CGGCTCGGAAGGAAGGAGGCAGGCATGTTAAGATAGTTGTCAGCTTTCAG,"Exon (Nav2-204/Nav2, exon 31 of 40)",7,48959097,49606821,647725,1,Nav2-204,626077,Nav2-204;Nav2-202;Nav2-216;Nav2-212;Nav2-205,Nav2;Nav2;Nav2;Nav2;Nav2,0;0;0;-21;-2194,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,7,78286,ENSMUSG00000052512,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15383,cg13714749,0.000019,0.00000485,3.907974239,0.000114325,gain,ns,0.0000174,0.00000825,2.114947572,0.035232099,pos,ns,0.011681174,0.002415816,4.835291932,0.0000021,pos,ns,5.678444854,-0.000195969,0.0000831,-2.358806018,0.018954057,neg,ns,0.924667221,Fam83f,Fam83f_Exon,15,80672341,80672390,80672341,80672342,50,-,CGCACCTCAAGCAGGTGGTCAGGCAGATGATCCAACAGGCCCAGAAGGTA,Promoter (<=1kb),15,80671847,80700425,28579,1,Fam83f-201,494,Fam83f-201,Fam83f,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,213956,ENSMUSG00000022408,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8490,cg02967282,0.0000168,0.00000471,3.567304763,0.000417685,gain,ns,0.0000169,0.000008,2.114762886,0.035247971,pos,ns,0.002686854,0.002342355,1.147073396,0.252235821,pos,ns,0.598193237,0.0000182,0.0000806,0.225940304,0.821396741,pos,ns,0.106697774,Lbx1,Lbx1_Intergenic_downstream,19,45229266,45229315,45229266,45229267,50,+,CGGCCCCAGCTCGTCCCTTTCAGGGGGGACTCATGCATCAAACTTCAATT,Distal Intergenic,19,45232684,45235812,3129,2,Lbx1-201,6497,Lbx1-201,Lbx1,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,30,50,16814,ENSMUSG00000025216,mapped to different genes,19,45229134,45229278,145,*,145,10,0.703448276,0.61026936,0.068965517,0.00000206,CpGisland,TRUE,U13,Hc-P
8522,cg19507206,0.0000217,0.00000444,4.884753984,0.00000166,gain,yes,0.0000159,0.00000754,2.114537262,0.03526737,pos,ns,0.008235266,0.002208074,3.729614611,0.000227984,pos,ns,3.64209499,-0.000114869,0.0000759,-1.51272421,0.131368503,neg,ns,0.098905366,Lbx1,Lbx1_Intergenic_upstream,19,45293662,45293711,45293710,45293711,50,-,ATGGTAATTAGGAGGGCCCTCATTACCCTGGCGGAGCCGGCTGAGAGCCG,Distal Intergenic,19,45232684,45235812,3129,2,Lbx1-201,-57899,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,15,50,16814,ENSMUSG00000025216,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
11727,cg17348621,-0.0000233,0.00000895,-2.602748516,0.009692462,loss,ns,0.0000321,0.0000152,2.114404878,0.035278757,pos,ns,0.009268597,0.004452058,2.081868026,0.038174571,pos,ns,1.418225833,-0.000392801,0.000153106,-2.565553011,0.010771196,neg,ns,0.84387905,Marchf7,Marchf7_Exon,2,60245208,60245257,60245256,60245257,50,+,CTAGTTTATTAACCTTGCAAGAACTCTTCAGGCACATATGGAAGATCTCG,"Exon (Marchf7-203/Marchf7, exon 9 of 10)",2,60209887,60249211,39325,1,Marchf7-203,35321,Marchf7-203;Marchf7-209;Marchf7-202;Marchf7-201;Marchf7-208;Marchf7-206;Marchf7-204;Marchf7-207,Marchf7;Marchf7;Marchf7;Marchf7;Marchf7;Marchf7;Marchf7;Marchf7,0;0;0;0;0;8320;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1765,cg26340753,0.0000131,0.00000792,1.654163166,0.099106507,gain,ns,0.0000284,0.0000135,2.114314421,0.035286539,pos,ns,-0.00404319,0.003941484,-1.025803828,0.305783828,neg,ns,0.514585486,0.000132364,0.000135547,0.976518795,0.329568848,pos,ns,0.69383442,Hephl1,Hephl1_Exon,9,15074102,15074151,15074150,15074151,50,+,ACTCCCAGTTTTTGTTAGGGGCATAATCCCATTCTACTTCTTCAGCGGCG,"Exon (Hephl1-201/Hephl1, exon 12 of 20)",9,15051841,15112108,60268,2,Hephl1-201,37957,Hephl1-201,Hephl1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,244698,ENSMUSG00000031936,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5705,cg26481779,0.000013,0.00000524,2.481086689,0.013628329,gain,ns,-0.0000188,0.0000089,-2.11416715,0.035299212,neg,ns,-0.009363679,0.002606803,-3.592016478,0.000381439,neg,ns,3.418575455,0.000327123,0.0000896,3.648979022,0.000308826,pos,ns,0.900189165,Mapkap1,Mapkap1_Intron,2,34602304,34602353,34602304,34602305,50,-,CGGTTCTGCATGACTAGTTAAAGAAGATGGCAAGAAGATTAATGAAAGCA,"Intron (Mapkap1-204/Mapkap1, intron 9 of 10)",2,34406862,34623475,216614,1,Mapkap1-204,195442,Mapkap1-204;Mapkap1-202;Mapkap1-201;Mapkap1-209;Mapkap1-203,Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,59,227743,ENSMUSG00000038696,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15678,cg26233720,0.00000222,0.0000031,0.716834952,0.474015663,gain,ns,-0.0000111,0.00000527,-2.1140571,0.035308684,neg,ns,-0.00039814,0.001542545,-0.258105667,0.796496625,neg,ns,0.09881606,0.000029,0.000053,0.546238961,0.585294589,pos,ns,0.841762701,Zdhhc21,Zdhhc21_threeUTR,4,82806410,82806459,82806458,82806459,50,+,AGTGCCAAAAACTTCTGAGAAGGTCTGCTGCCATGGCTTTCGGGGCCTCG,3' UTR,4,82798738,82859673,60936,2,Zdhhc21-201,53214,Zdhhc21-201;Zdhhc21-206;Zdhhc21-202,Zdhhc21;Zdhhc21;Zdhhc21,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,3,68268,ENSMUSG00000028403,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1483,cg20219756,0.00000642,0.0000023,2.795354708,0.005507603,gain,ns,-0.00000825,0.0000039,-2.114016304,0.035312196,neg,ns,0.000298001,0.001143452,0.260615571,0.794562012,pos,ns,0.099872203,0.0000182,0.0000393,0.461698121,0.644621634,pos,ns,0.950800774,Rsu1,Rsu1_threeUTR,2,13217262,13217311,13217262,13217263,50,-,CGCAGGGTGGCTGCAAATTAAACAGCAATATATAAACAGGGTGGCATGGA,3' UTR,2,13076821,13271333,194513,2,Rsu1-202,54022,Rsu1-202;Rsu1-201;Rsu1-209;Rsu1-207;Rsu1-208;Rsu1-205;Rsu1-204;Rsu1-206,Rsu1;Rsu1;Rsu1;Rsu1;Rsu1;Rsu1;Rsu1;Rsu1,0;0;0;0;0;0;53910;53980,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,1,20163,ENSMUSG00000026727,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17026,cg14415978,-0.00000976,0.00000386,-2.525947127,0.012036569,loss,ns,-0.0000139,0.00000656,-2.113970985,0.035316098,neg,ns,0.001423882,0.001922814,0.740520111,0.459544963,pos,ns,0.33767199,-0.000118371,0.0000661,-1.790103953,0.074413024,neg,ns,0.857775627,Dynll2,Dynll2_Exon,11,87981483,87981532,87981531,87981532,50,+,TGAAGTGCTTTGTCTCGTGTGTGACGTAGCTGCCAAAATTTCGGCCCACG,"Exon (Dynll2-204/Dynll2, exon 2 of 2)",11,87979525,87984012,4488,2,Dynll2-204,2480,Dynll2-204;Dynll2-202;Dynll2-201;Dynll2-203,Dynll2;Dynll2;Dynll2;Dynll2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,5,68097,ENSMUSG00000020483,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2164,cg23050718,0.0000393,0.00000735,5.353399273,0.000000168,gain,yes,0.0000264,0.0000125,2.113789126,0.035331759,pos,ns,0.011932139,0.00365611,3.263615758,0.001222872,pos,ns,2.912619044,-0.000293907,0.000125733,-2.337545847,0.020046888,neg,ns,0.106917563,Kdm6a,Kdm6a_fiveUTR,X,18162637,18162686,18162685,18162686,50,-,ACAATTACAACAACTTTGTGCTGGTGCCGGGGAAGTTTGTGTCTCCAACG,Promoter (<=1kb),20,18162637,18236715,74079,1,Kdm6a-209,0,Kdm6a-201;Kdm6a-202;Kdm6a-209;Kdm6a-205;Kdm6a-203,Kdm6a;Kdm6a;Kdm6a;Kdm6a;Kdm6a,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,14,22289,ENSMUSG00000037369,conserved gene and region,X,18162378,18162803,426,*,426,38,0.657276995,0.82697318,0.089201878,3.42E-27,CpGisland,TRUE,U1,Pr-A
10153,cg19638409,0.000203956,0.00002,10.21208856,2.70E-21,gain,yes,-0.0000717,0.0000339,-2.11374353,0.035335687,neg,ns,0.032104901,0.0099403,3.229771962,0.001371841,pos,ns,2.862696158,-0.001357269,0.000341846,-3.970409483,0.0000892,neg,ns,0.3894542,Gm28308,Gm28308_fiveUTR,6,52204316,52204365,52204316,52204317,50,+,CGACCGCAAAATGAGTTTACAAAATAAGAGCTCATTTGTTTTTTGATATG,5' UTR,6,52163359,52213339,49981,2,Gm28308-201,8974,Gm28308-201;Hoxa3-201;Hoxa3-203;Hoxa5-201;Hoxa6-201,Gm28308;Hoxa3;Hoxa3;Hoxa5;Hoxa6,0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,21,103,,NA,mapped to different genes,6,52203658,52204321,664,*,664,70,0.680722892,0.922222222,0.105421687,5.32E-55,CpGisland,TRUE,U3,Pr-B
18083,cg19961276,-0.00000348,0.00000382,-0.911332228,0.362828454,loss,ns,0.0000137,0.00000649,2.113548482,0.035352492,pos,ns,-0.00084201,0.001901003,-0.442929374,0.658125738,neg,ns,0.181691124,0.000115235,0.0000654,1.762668691,0.078941731,pos,ns,0.945128211,Magi1,Magi1_Exon,6,93680809,93680858,93680857,93680858,50,+,TAAGGTAGAAGCAAGCCTCCCCGAGCTTTTCATTTCTCATACATGCAGCG,"Exon (Magi1-201/Magi1, exon 21 of 22)",6,93675455,94283322,607868,2,Magi1-201,602464,Magi1-201;Magi1-202;Magi1-208;Magi1-203;Magi1-206;Magi1-209;Magi1-205,Magi1;Magi1;Magi1;Magi1;Magi1;Magi1;Magi1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,18,14924,ENSMUSG00000045095,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5864,cg19340430,-0.000000209,0.00000827,-0.025338368,0.979801373,loss,ns,0.0000297,0.000014,2.113486811,0.035357807,pos,ns,0.004334314,0.004115032,1.053288067,0.293029261,pos,ns,0.53308901,-0.0000299,0.000141516,-0.211165956,0.832896522,neg,ns,0.924500479,Ctnna1,Ctnna1_Intron,18,35068641,35068690,35068689,35068690,50,+,TTTAGTTCAATTAAGATTTCACATCAACAAATTAAAATGCACCCTCACCG,"Intron (Gm36037-202/Gm36037-202, intron 3 of 3)",18,35118859,35254779,135921,1,Ctnna1-201,-50169,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,13,12385,ENSMUSG00000037815,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15515,cg06065065,0.00000822,0.00000613,1.341261248,0.180817461,gain,ns,0.000022,0.0000104,2.113401624,0.03536515,pos,ns,0.006959378,0.003048725,2.282717392,0.023123909,pos,ns,1.635938754,-0.000221033,0.000104845,-2.108183468,0.035817431,neg,ns,0.896956922,Gm7503,Gm7503_Intron,18,81510154,81510203,81510154,81510155,50,-,CGTACATCCCGCTTTCAAGTAAAATTTAAAATGAGTGTACTCTTGGGGTA,"Intron (Gm50412-201/Gm50412-201, intron 2 of 2)",18,80997003,80997383,381,2,Gm7503-201,-512820,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,21,665124,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1282,cg17035891,-0.00000137,0.00000171,-0.79880548,0.425014778,loss,ns,0.00000615,0.00000291,2.113116835,0.035389707,pos,ns,0.000869922,0.000852727,1.020164709,0.308445829,pos,ns,0.510821099,-0.0000303,0.0000293,-1.033131126,0.302347839,neg,ns,0.970380112,Zfr,Zfr_Exon,15,12170845,12170894,12170893,12170894,50,+,CCGGACGTCTTGGACAGGCAAAAATGCCTTGACGCTCTGGCTGCTCTACG,"Exon (Zfr-201/Zfr, exon 16 of 20)",15,12117831,12185683,67853,1,Zfr-201,53014,Zfr-201;Zfr-207;Zfr-208;Zfr-209;Zfr-206,Zfr;Zfr;Zfr;Zfr;Zfr,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,12,22763,ENSMUSG00000022201,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6385,cg05293246,-0.0000344,0.00000701,-4.910323091,0.00000147,loss,yes,0.0000252,0.0000119,2.113016175,0.03539839,pos,ns,0.015706047,0.00349057,4.499564662,0.00000964,pos,ns,5.015806853,-0.00052404,0.00012004,-4.365530073,0.0000173,neg,ns,0.777552911,Zfp536,Zfp536_Intergenic_downstream,7,37096449,37096498,37096449,37096450,50,-,CGACTCTCAGCTGATCTGTTACAATTCACATCCAAAGAGACCAGAAGGAA,Distal Intergenic,7,37472135,37479986,7852,2,Zfp536-204,383537,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,112,243937,ENSMUSG00000043456,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15305,cg20407528,-0.0000164,0.00000788,-2.085299755,0.037859856,loss,ns,0.0000283,0.0000134,2.112824068,0.035414967,pos,ns,0.006741058,0.003920861,1.719280022,0.086561597,pos,ns,1.06267474,-0.000319532,0.000134838,-2.369748175,0.018412275,neg,ns,0.874658365,Cul3,Cul3_threeUTR,1,80266909,80266958,80266909,80266910,50,-,CGCAGCACATTCACATTTTCCCGAGGAACTGTAAAGATGATCTCTACAGG,3' UTR,1,80264923,80340480,75558,2,Cul3-201,73522,Cul3-201;Cul3-202;Cul3-205;Cul3-204,Cul3;Cul3;Cul3;Cul3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,7,26554,ENSMUSG00000004364,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13103,cg19206922,-0.00000527,0.00000656,-0.803711444,0.42217949,loss,ns,0.0000235,0.0000111,2.11274347,0.035421924,pos,ns,0.01070762,0.003262988,3.281538348,0.001150204,pos,ns,2.939225202,-0.000417851,0.000112214,-3.723701529,0.000233158,neg,ns,0.834061639,Tcf4,Tcf4_Intron,18,69469800,69469849,69469848,69469849,50,-,ATTTGGTTACTGTGGTCATATTGTGACAGCTGCTAGCTCATTATAATTCG,"Intron (Tcf4-259/Tcf4, intron 5 of 6)",18,69343356,69564082,220727,1,Tcf4-259,126444,Tcf4-259;Tcf4-201;Tcf4-207;Tcf4-210;Tcf4-240;Tcf4-254;Tcf4-246;Tcf4-206;Tcf4-202;Tcf4-257;Tcf4-232;Tcf4-215;Tcf4-248;Tcf4-231;Tcf4-205;Tcf4-253;Tcf4-233;Tcf4-238;Tcf4-245;Tcf4-249;Tcf4-219;Tcf4-235;Tcf4-227;Tcf4-250,Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,42,66,21413,ENSMUSG00000053477,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6192,cg19835617,0.00000329,0.00000239,1.381138095,0.168231265,gain,ns,-0.00000856,0.00000405,-2.112689248,0.035426604,neg,ns,0.004751708,0.001187176,4.002529409,0.0000785,pos,ns,4.105331703,-0.000157202,0.0000408,-3.85046057,0.00014323,neg,ns,0.060857903,Pura,Pura_Exon,18,36287798,36287847,36287846,36287847,50,-,GAGCCGGCCGAGCTGCCCGAGGGCACCTCCTTGACTGTGGACAACAAGCG,"Exon (Pura-201/Pura, exon 2 of 2)",18,36281097,36292535,11439,1,Pura-201,6701,Pura-201,Pura,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,13,19,19290,ENSMUSG00000043991,conserved gene and region,18,36286687,36288029,1343,*,1343,129,0.68652271,0.823041768,0.096053611,4.14E-95,CpGisland,TRUE,U4,Pr-F
22870,cg20737766,-0.0000322,0.00000543,-5.927245764,8.20E-09,loss,yes,-0.0000195,0.00000922,-2.112453818,0.035446935,neg,ns,-0.006799659,0.002700565,-2.517865286,0.012310483,neg,ns,1.909724904,0.000036,0.0000929,0.388161256,0.698163122,pos,ns,0.920839535,Meis2,Meis2_Intron,2,116047547,116047596,116047595,116047596,50,-,AGTTATGCCTGGTGTTGCTAGCTGACTTGGAGTCAGAAATGCTTGAAGCG,"Intron (Meis2-201/Meis2, intron 7 of 11)",2,115863064,116065047,201984,2,Meis2-201,17451,Meis2-201;Meis2-203;Meis2-205;Meis2-206;Meis2-204;Meis2-202;Meis2-217;Meis2-213;Meis2-211;Meis2-210;Meis2-209;Meis2-212,Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2,0;0;0;0;0;0;0;0;0;0;0;11246,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,45,97,17536,ENSMUSG00000027210,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13918,cg22807380,-0.00000452,0.000000908,-4.97707595,0.00000107,loss,yes,0.00000326,0.00000154,2.112426411,0.035449302,pos,ns,0.000705882,0.000451993,1.561709423,0.11937671,pos,ns,0.923080396,-0.0000169,0.0000155,-1.085317439,0.278624357,neg,ns,0.025502644,Itm2b,Itm2b_Promoter,14,73384703,73384752,73384703,73384704,50,-,CGAAAGTGGGAAACAACAGAGGTTTAGGCTTGTAATGATGTCAGCCATTT,Promoter (<=1kb),14,73362226,73385289,23064,2,Itm2b-201,537,Itm2b-201;Itm2b-204,Itm2b;Itm2b,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,1,1,16432,ENSMUSG00000022108,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
16490,cg14322287,0.0000779,0.0000121,6.418776772,5.14E-10,gain,yes,0.0000436,0.0000206,2.112390999,0.035452361,pos,ns,-0.002075806,0.006041175,-0.343609594,0.731372836,neg,ns,0.135861174,0.000161307,0.000207756,0.776427988,0.438088318,pos,ns,0.461273249,App,App_Intron,16,85172174,85172223,85172222,85172223,50,+,GCCTCCACACAGCTTTTCTTTGCTGCACTGCAGAGGCGCCATCTTCTCCG,"Intron (App-206/App, intron 1 of 17)",16,84949685,85173766,224082,2,App-206,1543,App-206;App-207;App-203;App-201;App-204;App-202;App-209,App;App;App;App;App;App;App,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,11820,ENSMUSG00000022892,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8133,cg16442395,-0.0000579,0.00000943,-6.133083011,2.62E-09,loss,yes,0.0000338,0.000016,2.112071045,0.035480009,pos,ns,0.030513883,0.004695268,6.498858822,3.23E-10,pos,ns,9.491199088,-0.001303993,0.00016147,-8.075763843,1.50E-14,neg,yes,0.349764021,Pax2,Pax2_Intron,19,44778506,44778555,44778506,44778507,50,+,CGAGTCAGGAGGTCAAACAACTGTTATGGAGCGAAGTTAAAAATCCAAAT,"Intron (Pax2-203/Pax2, intron 3 of 9)",19,44756045,44837851,81807,1,Pax2-203,22461,Pax2-203;Pax2-201;Pax2-202,Pax2;Pax2;Pax2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,35,166,18504,ENSMUSG00000004231,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14554,cg08253054,-0.0000204,0.00000457,-4.461249291,0.0000114,loss,ns,0.0000164,0.00000776,2.11182432,0.035501343,pos,ns,-0.001091002,0.002272611,-0.480065617,0.631519291,neg,ns,0.199613378,-0.0000242,0.0000782,-0.309326499,0.757280979,neg,ns,0.916228745,Gm50360,Gm50360_Intergenic_downstream,18,76409803,76409852,76409851,76409852,50,+,ACCCTTTTTAATTACTCAGCCTCTCTCACAGTTGGAGGTAATAATTGTCG,Distal Intergenic,18,76321824,76322259,436,1,Gm50360-201,87979,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,10,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
332,cg19978750,0.00012667,0.0000135,9.383643913,1.41E-18,gain,yes,0.0000484,0.0000229,2.111478177,0.035531291,pos,ns,0.037461338,0.006718627,5.575742853,5.37E-08,pos,ns,7.270295363,-0.000338193,0.000231053,-1.463700759,0.144288963,neg,ns,0.652153274,Zfhx4,Zfhx4_Intron,3,5203347,5203396,5203395,5203396,50,-,AGCTAGCCAGCGAGGCTGTCCTGAGAAATAGCTTCCAATGACTTTATACG,"Intron (2700069I18Rik-201/2700069I18Rik-201, intron 1 of 2)",3,5218526,5413165,194640,1,Zfhx4-203,-15179,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,27,77,80892,ENSMUSG00000025255,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12939,cg20904945,-0.00000657,0.00000346,-1.901182038,0.058205327,loss,ns,0.0000124,0.00000587,2.111312778,0.035545608,pos,ns,-0.00255499,0.001720116,-1.48535948,0.138464808,neg,ns,0.858660592,0.000122624,0.0000592,2.07294093,0.03900374,pos,ns,0.860091251,Gm50259,Gm50259_Intergenic_downstream,18,68543577,68543626,68543625,68543626,50,-,AGTGACTGTTTCTAACCTTTCTAACCTGTATTTTACTCCCCAAGACCACG,Distal Intergenic,18,68568411,68568744,334,2,Gm50259-201,25167,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,7,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2166,cg03929725,-0.000000282,0.00000183,-0.153615484,0.878012877,loss,ns,-0.00000657,0.00000311,-2.111214517,0.035554117,neg,ns,-0.000955339,0.000912285,-1.047193644,0.295826063,neg,ns,0.528963567,0.0000183,0.0000314,0.581831807,0.561102839,pos,ns,0.959821935,Cyp7b1,Cyp7b1_Intron,3,18165313,18165362,18165313,18165314,50,+,CGCAGAGAGTAATTACCTATCTGTCAGCGTTGCTGGTGTGTGCGAAATAG,"Intron (Cyp7b1-201/Cyp7b1, intron 1 of 5)",3,18071950,18243338,171389,2,Cyp7b1-201,77976,Cyp7b1-201,Cyp7b1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,17,13123,ENSMUSG00000039519,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15418,cg14650748,0.0000686,0.0000195,3.51603976,0.000503428,gain,ns,-0.00007,0.0000331,-2.111029645,0.035570129,neg,ns,0.007496132,0.009710595,0.771953994,0.440729749,pos,ns,0.355827634,-0.000720208,0.000333947,-2.156656134,0.031801099,neg,ns,0.481939173,Tnrc6b,Tnrc6b_Exon,15,80876357,80876406,80876357,80876358,50,+,CGCCAGCCCAATTGGCAGCTCTCCATCGCCACCAGTCAATGGTGGCAACA,"Exon (Tnrc6b-201/Tnrc6b, exon 7 of 25)",15,80711313,80941085,229773,1,Tnrc6b-201,165044,Tnrc6b-201;Tnrc6b-204;Tnrc6b-207;Tnrc6b-208,Tnrc6b;Tnrc6b;Tnrc6b;Tnrc6b,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,20,24,213988,ENSMUSG00000047888,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6474,cg12276308,-0.00000409,0.00000273,-1.49986871,0.134666131,loss,ns,0.00000978,0.00000463,2.110595773,0.035607733,pos,ns,0.00454311,0.001356918,3.348110163,0.000913962,pos,ns,3.039072065,-0.00015021,0.0000467,-3.218939792,0.001422965,neg,ns,0.940116006,Zfp536,Zfp536_Intron,7,37396354,37396403,37396354,37396355,50,+,CGAACAGCTTGTATCCCCATGAAAATCAATGGATGGAACAAATTGTATTA,"Intron (Zfp536-211/Zfp536, intron 3 of 3)",7,37318024,37568390,250367,2,Zfp536-211,171987,Zfp536-211,Zfp536,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,73,112,243937,ENSMUSG00000043456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19874,cg26569020,0.00000415,0.00000749,0.553959858,0.580005678,gain,ns,0.0000268,0.0000127,2.110590426,0.035608197,pos,ns,-0.000641027,0.003726427,-0.172021873,0.863532577,neg,ns,0.063721274,0.000198843,0.000128151,1.551621228,0.121773159,pos,ns,0.847966153,Zmym3,Zmym3_Exon,X,101416260,101416309,101416260,101416261,50,-,CGCTGATAGGCAGTCTGCCCCTTCTGCAGTGGTGTCCGGCAATGTGCACA,"Exon (Zmym3-203/Zmym3, exon 5 of 24)",20,101404384,101419798,15415,2,Zmym3-203,3489,Zmym3-203;Zmym3-209;Zmym3-206;Zmym3-201;Zmym3-212;Zmym3-214;Zmym3-210;Zmym3-215;Zmym3-207;Zmym3-202;Zmym3-208;Zmym3-204;Zmym3-205;Zmym3-211;Zmym3-217;Zmym3-216;Zmym3-213,Zmym3;Zmym3;Zmym3;Zmym3;Zmym3;Zmym3;Zmym3;Zmym3;Zmym3;Zmym3;Zmym3;Zmym3;Zmym3;Zmym3;Zmym3;Zmym3;Zmym3,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,7,56364,ENSMUSG00000031310,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27725,cg07705119,-0.00000598,0.00000145,-4.122391915,0.0000482,loss,ns,-0.0000052,0.00000246,-2.110444409,0.03562086,neg,ns,0.000456347,0.000721399,0.632585513,0.527470659,pos,ns,0.277801693,-0.0000165,0.0000248,-0.666385315,0.505660464,neg,ns,0.970351194,Cdc42bpa,Cdc42bpa_Exon,1,179999394,179999443,179999394,179999395,50,-,CGATTACATAGAGAAGACTTTGAAATATTAAAGGTGATTGGTCGAGGAGC,"Exon (Cdc42bpa-203/Cdc42bpa, exon 2 of 35)",1,179960472,180163156,202685,1,Cdc42bpa-203,38922,Cdc42bpa-203;Cdc42bpa-204;Cdc42bpa-208;Cdc42bpa-201;Cdc42bpa-202;Cdc42bpa-218;Cdc42bpa-213;Cdc42bpa-206,Cdc42bpa;Cdc42bpa;Cdc42bpa;Cdc42bpa;Cdc42bpa;Cdc42bpa;Cdc42bpa;Cdc42bpa,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,10,226751,ENSMUSG00000026490,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8548,cg08419426,0.000106289,0.0000287,3.709312709,0.000246212,gain,ns,-0.000102735,0.0000487,-2.11041381,0.035623514,neg,ns,0.019751812,0.014261652,1.384959605,0.167060685,pos,ns,0.777125743,-0.000745754,0.000490457,-1.520528729,0.129397427,neg,ns,0.571027689,Btrc,Btrc_Exon,19,45329915,45329964,45329915,45329916,50,-,CGCCAAACCCCTAGTGAAAGACAATCAGGCTCGCTGTCACCGAGCTAATT,"Exon (Gm28578-209/Gm28578-209, exon 7 of 7)",19,45363734,45507736,144003,1,Btrc-204,-33819,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,30,98,12234,ENSMUSG00000025217,conserved gene and region,19,45329908,45330151,244,*,244,14,0.471311475,1.056277056,0.057377049,8.59E-08,CpGisland,TRUE,NA,NRS
8285,cg08937323,-0.0000271,0.0000177,-1.53017746,0.126992575,loss,ns,-0.0000635,0.0000301,-2.109836123,0.035673655,neg,ns,0.027821597,0.008815846,3.155862494,0.001757431,pos,ns,2.755121786,-0.001132637,0.000303176,-3.735902241,0.000222602,neg,ns,0.79833962,Ube4a,Ube4a_threeUTR,9,44946396,44946445,44946396,44946397,50,-,CGGCCTGCATTTGCATGCAAACAGTTTCCAAGCCAGGACAAGATACAGTG,3' UTR,9,44923127,44965578,42452,2,Ube4a-201,19133,Ube4a-201;Ube4a-202;Ube4a-205;Ube4a-206;Ube4a-204;Ube4a-208;Ube4a-210,Ube4a;Ube4a;Ube4a;Ube4a;Ube4a;Ube4a;Ube4a,0;0;0;0;0;19115;19107,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,4,140630,ENSMUSG00000059890,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13284,cg27407249,0.0000978,0.0000095,10.28874497,1.49E-21,gain,yes,-0.000034,0.0000161,-2.108996911,0.035746602,neg,ns,0.008006948,0.004729493,1.692982477,0.091463426,pos,ns,1.038752537,-0.000326847,0.000162647,-2.009550491,0.04534512,neg,ns,0.283111147,Pebp4,Pebp4_Intron,14,69995113,69995162,69995113,69995114,50,-,CGATCCCTGAGGAAGTGTGGGGAAAAGCCTGGAGCCCACCCCCGTGTCCC,"Intron (Pebp4-201/Pebp4, intron 4 of 6)",14,69840420,70059918,219499,1,Pebp4-201,154693,Pebp4-201,Pebp4,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,14,14,73523,ENSMUSG00000022085,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
4332,cg21076628,-0.00000943,0.00000206,-4.574125408,0.00000692,loss,ns,-0.00000739,0.0000035,-2.108588485,0.03578215,neg,ns,-0.001314889,0.001026442,-1.281016106,0.201145492,neg,ns,0.696489696,-0.0000143,0.0000353,-0.406122389,0.684932871,neg,ns,0.95891137,Samd4b,Samd4b_threeUTR,7,28405959,28406008,28406007,28406008,50,+,GAGTCAGGCACTTTTCGATGAGCTGGAGGTAACTGGTGATGTTCTCCTCG,3' UTR,7,28399522,28436191,36670,2,Samd4b-204,30183,Samd4b-204;Samd4b-201;Samd4b-203;Samd4b-202;Samd4b-205,Samd4b;Samd4b;Samd4b;Samd4b;Samd4b,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,9,11,233033,ENSMUSG00000109336,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26891,cg07790870,0.000067,0.0000166,4.032040249,0.0000697,gain,ns,-0.0000595,0.0000282,-2.107894909,0.035842586,neg,ns,-0.007764757,0.008275558,-0.938275918,0.348833077,neg,ns,0.457382341,0.000151321,0.000284596,0.531706069,0.595310395,pos,ns,0.306985096,Cbfa2t2,Cbfa2t2_Intron,2,154460146,154460195,154460194,154460195,50,+,ATCTGTGTTTCCCTGGAATGGGACAGGCAGCTCTAGTCAGTGAGAAATCG,"Intron (Cbfa2t2-204/Cbfa2t2, intron 1 of 10)",2,154436481,154539356,102876,1,Cbfa2t2-204,23665,Cbfa2t2-204;Cbfa2t2-202;Cbfa2t2-201;Cbfa2t2-203;Cbfa2t2-209,Cbfa2t2;Cbfa2t2;Cbfa2t2;Cbfa2t2;Cbfa2t2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,4,12396,ENSMUSG00000038533,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27272,cg19755394,0.0000189,0.00000885,2.133362997,0.033679924,gain,ns,0.0000317,0.000015,2.10787678,0.035844167,pos,ns,0.010687999,0.004403274,2.427284439,0.015781741,pos,ns,1.801845078,-0.00032965,0.000151428,-2.176940809,0.030239195,neg,ns,0.248146949,Rbbp7,Rbbp7_Exon,X,162761598,162761647,162761598,162761599,50,+,CGTGTCATCAATGAAGAATATAAAATCTGGAAGAAGAATACACCGTTTCT,"Exon (Rbbp7-201/Rbbp7, exon 2 of 12)",20,162760402,162779092,18691,1,Rbbp7-201,1196,Rbbp7-201;Rbbp7-203;Rbbp7-202;Rbbp7-204,Rbbp7;Rbbp7;Rbbp7;Rbbp7,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,245688,ENSMUSG00000031353,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
931,cg08347183,0.0000187,0.00000159,11.80021578,8.58E-27,gain,yes,-0.00000568,0.00000269,-2.107580463,0.035870015,neg,ns,0.000286956,0.000788984,0.363702855,0.716327824,pos,ns,0.144888179,0.0000367,0.0000271,1.351880465,0.17739907,pos,ns,0.011887363,Gata3,Gata3_fiveUTR,2,9878559,9878608,9878607,9878608,50,-,GTATCAAGACGGCGCCAGGCAGCTCAGTGTTCGCAGACAGCTGTGGCGCG,Promoter (<=1kb),2,9857078,9878600,21523,2,Gata3-201,0,4930412O13Rik-201;4930412O13Rik-202;9230102O04Rik-202;9230102O04Rik-201;Gata3-201;Gata3-205;Gata3-206;Gata3-202;Gata3-204;Gata3-203,4930412O13Rik;4930412O13Rik;9230102O04Rik;9230102O04Rik;Gata3;Gata3;Gata3;Gata3;Gata3;Gata3,-2644;-4028;10932;5385;0;0;-3160;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,21,14462,ENSMUSG00000015619,conserved gene but different region,2,9878568,9878714,147,*,147,12,0.639455782,0.804377565,0.081632653,1.97E-08,CpGisland,TRUE,U3,Pr-B
6031,cg07786198,0.0000778,0.0000133,5.866424771,1.14E-08,gain,yes,-0.0000475,0.0000225,-2.107567864,0.035871114,neg,ns,-0.013665471,0.006596728,-2.071553107,0.039134015,neg,ns,1.407445592,0.000379184,0.000226861,1.671437737,0.095644336,pos,ns,0.623048737,Cxxc5,Cxxc5_Intron,18,35875104,35875153,35875152,35875153,50,+,ATTTACATTTCATTTGCATCGTGTTCAATTAAAAACCTGACCAGCTCCCG,"Intron (Gm50399-201/Gm50399-201, intron 1 of 1)",18,35854738,35858619,3882,1,Cxxc5-205,20366,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,49,67393,ENSMUSG00000046668,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U5,En-Sd
11962,cg19583211,0.0000409,0.00000434,9.408387912,1.17E-18,gain,yes,-0.0000155,0.00000738,-2.107516177,0.035875624,neg,ns,0.003511666,0.002161217,1.624855926,0.105209491,pos,ns,0.97794508,-0.0000459,0.0000743,-0.617555461,0.537321776,neg,ns,0.097569922,Tbr1,Tbr1_Exon,2,61804923,61804972,61804971,61804972,50,+,GGACTCACCAGGGGACGTCCAGAGAAGTAAACTCTCTCCTGTCTTGGACG,Promoter (<=1kb),2,61804453,61814114,9662,1,Tbr1-201,470,Psmd14-201;Psmd14-208;Psmd14-202;Tbr1-204;Tbr1-201;Tbr1-202;Tbr1-203,Psmd14;Psmd14;Psmd14;Tbr1;Tbr1;Tbr1;Tbr1,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,24,27,21375,ENSMUSG00000035033,conserved gene and region,2,61804938,61805248,311,*,311,21,0.620578778,0.763323983,0.067524116,9.07E-13,CpGisland,TRUE,U13,Hc-P
1013,cg00689383,0.000000587,0.0000021,0.279702476,0.779892311,gain,ns,-0.00000752,0.00000357,-2.107173408,0.035905548,neg,ns,0.000935209,0.001045351,0.894635904,0.371675826,pos,ns,0.429835685,-0.0000614,0.0000359,-1.707879658,0.088659789,neg,ns,0.951420563,Grm1,Grm1_Exon,10,10719559,10719608,10719559,10719560,50,-,CGGGTCTTGAAGGCATAGTAGGTACAGCTCATGATGAGGAGTCCATTGTA,"Exon (Grm1-201/Grm1, exon 8 of 9)",10,10686059,11082356,396298,2,Grm1-201,362748,Grm1-201;Grm1-203;Grm1-202;Grm1-205,Grm1;Grm1;Grm1;Grm1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,7,14816,ENSMUSG00000019828,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3767,cg11621446,0.00000612,0.00000198,3.08158952,0.002243752,gain,ns,-0.0000071,0.00000337,-2.107062638,0.035915223,neg,ns,-0.002076436,0.000987666,-2.102366352,0.036327462,neg,ns,1.439764947,0.0000194,0.000034,0.572555721,0.567360557,pos,ns,0.945657221,Septin7,Septin7_Exon,9,25297815,25297864,25297815,25297816,50,-,CGTTTACCTCTTGCTGTGGTAGGTAGTAATACTATCATTGAAGTTAATGG,"Exon (Septin7-201/Septin7, exon 9 of 14)",9,25252439,25308571,56133,1,Septin7-201,45376,Septin7-201;Septin7-202;Septin7-210;Septin7-203,Septin7;Septin7;Septin7;Septin7,0;0;0;-1472,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19385,cg02987967,-0.00000902,0.00000194,-4.639266015,0.00000517,loss,ns,0.00000696,0.0000033,2.106976339,0.035922762,pos,ns,0.000989368,0.000968038,1.022034516,0.307561467,pos,ns,0.512068077,-0.0000112,0.0000333,-0.335466187,0.737500357,neg,ns,0.960535961,Foxp1,Foxp1_Intron,6,99189982,99190031,99190030,99190031,50,-,TTTTTAACAACTCTTTTTTCGTTAAATACAGTCAGTGTCAGGAAGATGCG,"Intron (Foxp1-206/Foxp1, intron 2 of 17)",6,98925338,99266515,341178,2,Foxp1-206,76484,Foxp1-206;Foxp1-204;Foxp1-220;Foxp1-221;Foxp1-222;Foxp1-223;Foxp1-202;Foxp1-211;Foxp1-212;Foxp1-224,Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,87,108655,ENSMUSG00000030067,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14974,cg24830181,-0.00000299,0.00000151,-1.974126557,0.049254821,loss,ns,0.00000542,0.00000257,2.106959172,0.035924262,pos,ns,0.001334957,0.000753676,1.771262395,0.077499555,pos,ns,1.110700794,-0.0000267,0.0000259,-1.028984403,0.304289179,neg,ns,0.963350249,Ttc29,Ttc29_Intron,8,78271982,78272031,78271982,78271983,50,-,CGCAAGCATCAGTAATACAGGAATGTTATATGGCTTTAGTTTGGGCCATT,"Intron (Ttc29-201/Ttc29, intron 7 of 13)",8,78213342,78394326,180985,1,Ttc29-201,58640,Ttc29-201;Ttc29-202;Ttc29-207,Ttc29;Ttc29;Ttc29,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,3,73301,ENSMUSG00000037101,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8694,cg24277252,0.0000881,0.0000111,7.930681525,3.99E-14,gain,yes,-0.0000398,0.0000189,-2.10660887,0.035954879,neg,ns,0.011893867,0.00552852,2.151365484,0.032219727,pos,ns,1.491878146,-0.000452434,0.000190125,-2.379661429,0.017933245,neg,ns,0.0925468,Gm31907,Gm31907_fiveUTR,18,45559329,45559378,45559377,45559378,50,+,AACTCAGTCTCGGTCCCCGCAGGTGATGTCATGCCCATTGTTTTGGTGCG,Promoter (<=1kb),18,45501590,45560130,58541,2,Gm31907-202,752,Gm31907-202;Kcnn2-205;Kcnn2-201;Kcnn2-207;Kcnn2-206;Kcnn2-202;Kcnn2-208;Kcnn2-203,Gm31907;Kcnn2;Kcnn2;Kcnn2;Kcnn2;Kcnn2;Kcnn2;Kcnn2,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,15,15,102634286,NA,mapped to different genes,18,45559377,45559494,118,*,118,12,0.677966102,0.932192232,0.101694915,1.49E-09,CpGisland,TRUE,U3,Pr-B
4836,cg17548238,-0.0000552,0.00000929,-5.941974621,7.57E-09,loss,yes,0.0000332,0.0000158,2.106377655,0.0359751,pos,ns,-0.00690626,0.004621254,-1.494455804,0.136073712,neg,ns,0.866225767,0.000173315,0.000158925,1.090551031,0.276317418,pos,ns,0.647969366,Glp1r,Glp1r_Intron,17,30911617,30911666,30911665,30911666,50,-,CCATCACCTTTAATTTTATTTGAGCAGGAAATAGGTCCTGGTGGTGCCCG,"Intron (Glp1r-201/Glp1r, intron 3 of 12)",17,30901817,30940791,38975,1,Glp1r-201,9800,Glp1r-201;Glp1r-202,Glp1r;Glp1r,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,14652,ENSMUSG00000024027,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6724,cg11202178,-0.0000147,0.00000435,-3.380853343,0.000815134,loss,ns,-0.0000156,0.00000739,-2.10635003,0.035977516,neg,ns,0.005028683,0.002165381,2.322308439,0.020863762,pos,ns,1.680607381,-0.000111268,0.0000745,-1.494180731,0.136145546,neg,ns,0.910071668,Pcdh1,Pcdh1_threeUTR,18,38188282,38188331,38188330,38188331,50,-,AGCCCTCCCACCCCCTGAGATCAAGGCAATGGTGGTTTTACAGGCTGACG,3' UTR,18,38185914,38212053,26140,2,Pcdh1-203,23722,Pcdh1-203;Pcdh1-204,Pcdh1;Pcdh1,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,10,17,75599,ENSMUSG00000051375,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5218,cg05277730,-0.00000128,0.000000989,-1.295818398,0.196002037,loss,ns,-0.00000354,0.00000168,-2.106115617,0.035998028,neg,ns,-0.001382702,0.000492269,-2.808834048,0.005287766,neg,ns,2.276727782,0.00000148,0.0000169,0.087614873,0.930239349,pos,ns,0.975154632,Depdc5,Depdc5_threeUTR,5,32901496,32901545,32901544,32901545,50,-,CTTCTCGTAACCATTAAAAAACTCTTCATCCAGTATCCAGTGTTGGTGCG,3' UTR,5,32863721,32956300,92580,1,Depdc5-201,37775,Depdc5-201;Depdc5-202;Depdc5-204;Depdc5-211;Depdc5-216;Depdc5-217;Depdc5-205;Depdc5-218,Depdc5;Depdc5;Depdc5;Depdc5;Depdc5;Depdc5;Depdc5;Depdc5,0;0;0;0;0;0;0;-2742,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,7,277854,ENSMUSG00000037426,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12328,cg13004181,-0.0000154,0.00000324,-4.75685965,0.00000302,loss,ns,0.0000116,0.00000551,2.105908557,0.036016154,pos,ns,-0.000111732,0.001614637,-0.069199384,0.944875529,neg,ns,0.024625399,0.0000558,0.0000555,1.004846742,0.315754342,pos,ns,0.938201406,Fign,Fign_Intergenic_downstream,2,63963492,63963541,63963492,63963493,50,-,CGGTGTTCACACTTCTGCCGTGTCCATCAGAAGCGATTACTGTGTAATTA,Distal Intergenic,2,63980447,64097988,117542,2,Fign-202,134496,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,28,84,60344,ENSMUSG00000075324,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23667,cg25769958,-0.000000635,0.000000809,-0.784735358,0.433208013,loss,ns,0.0000029,0.00000138,2.105817172,0.036024157,pos,ns,0.001292394,0.000402863,3.20802623,0.001476254,pos,ns,2.830838946,-0.0000406,0.0000139,-2.932006892,0.003618481,neg,ns,0.980158555,Ptbp2,Ptbp2_threeUTR,3,119718975,119719024,119719023,119719024,50,-,AACCATCAAACCTCCCAACTTTGTTAGAAAATTAATTTTTAATTGTGCCG,3' UTR,3,119718742,119783388,64647,2,Ptbp2-201,64364,Ptbp2-201;Ptbp2-213;Ptbp2-208;Ptbp2-206;Ptbp2-204;Ptbp2-211,Ptbp2;Ptbp2;Ptbp2;Ptbp2;Ptbp2;Ptbp2,0;0;0;0;0;5363,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,13,56195,ENSMUSG00000028134,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4716,cg15755108,0.00000703,0.00000428,1.643962784,0.101197612,gain,ns,-0.0000153,0.00000726,-2.10578142,0.036027288,neg,ns,-0.004036643,0.0021281,-1.896829142,0.058779835,neg,ns,1.230771639,0.000133949,0.0000732,1.830267994,0.068169901,pos,ns,0.829118093,Btbd9,Btbd9_Intron,17,30236895,30236944,30236943,30236944,50,+,ATCCTGCTAGCCCGTCATATTTAATTACATTTTAACTATATTCGTCTTCG,"Intron (Btbd9-202/Btbd9, intron 9 of 10)",17,30215524,30576488,360965,2,Btbd9-202,339544,Btbd9-202;Btbd9-203;Btbd9-201;Btbd9-218;Btbd9-208;Btbd9-221;Btbd9-224;Btbd9-205;Btbd9-219;Btbd9-209;Btbd9-206;Btbd9-220;Btbd9-210,Btbd9;Btbd9;Btbd9;Btbd9;Btbd9;Btbd9;Btbd9;Btbd9;Btbd9;Btbd9;Btbd9;Btbd9;Btbd9,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,5,224671,ENSMUSG00000062202,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27463,cg12150632,-0.00000683,0.00000463,-1.473530537,0.141622708,loss,ns,0.0000166,0.00000787,2.105653717,0.036038474,pos,ns,0.010131521,0.002305778,4.393969855,0.0000153,pos,ns,4.815259525,-0.000158591,0.0000793,-1.999996202,0.046372817,neg,ns,0.924915068,Pbx1,Pbx1_Intron,1,168300283,168300332,168300283,168300284,50,+,CGGATGGTTTATTTTCCCATGAGCACCCTGGCTCTCAGTATTAAGTCCCC,"Intron (Pbx1-208/Pbx1, intron 2 of 7)",1,168119364,168432270,312907,2,Pbx1-208,131938,Pbx1-208;Pbx1-205;Pbx1-206;Pbx1-201;Pbx1-202;Pbx1-204,Pbx1;Pbx1;Pbx1;Pbx1;Pbx1;Pbx1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,84,18514,ENSMUSG00000052534,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1017,cg15671915,-0.0000144,0.00000596,-2.419164772,0.0161316,loss,ns,0.0000213,0.0000101,2.105538473,0.036048572,pos,ns,0.004298698,0.002967827,1.448432925,0.148506691,pos,ns,0.82825398,-0.000123413,0.000102063,-1.209176421,0.227516468,neg,ns,0.87683583,Mib1,Mib1_Exon,18,10782900,10782949,10782948,10782949,50,+,CAATGCATAGCTACAGCTGGTTGAAGGGGACCAAATCCATTGAAGAGGCG,"Exon (Mir133a-1-201/Mir133a-1-201, exon 1 of 1)",18,10725548,10818578,93031,1,Mib1-201,57352,Mib1-201;Mib1-205;Mib1-202,Mib1;Mib1;Mib1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,3,225164,ENSMUSG00000024294,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16075,cg06143578,0.0000657,0.00000874,7.523804668,5.81E-13,gain,yes,-0.0000312,0.0000148,-2.105426205,0.036058411,neg,ns,-0.005327977,0.00434774,-1.22545885,0.2213326,neg,ns,0.654954614,0.000423243,0.000149518,2.830707358,0.004947927,pos,ns,0.838197877,Bnc2,Bnc2_Intron,4,84356922,84356971,84356970,84356971,50,+,TGTCTGTTTAGTGTCACTCAGTTGGGATGGATCCCGTTAAAGATCTGACG,"Intron (Bnc2-201/Bnc2, intron 6 of 7)",4,84275095,84675034,399940,2,Bnc2-201,318063,Bnc2-201;Bnc2-202;Bnc2-214;Bnc2-215;Bnc2-206;Bnc2-211;Bnc2-205;Bnc2-217;Bnc2-207;Bnc2-212,Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,91,242509,ENSMUSG00000028487,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25767,cg10144148,0.000041,0.00000876,4.686404012,0.00000417,gain,ns,0.0000313,0.0000149,2.105222473,0.036076272,pos,ns,0.013856789,0.00435863,3.179161504,0.001626228,pos,ns,2.788818441,-0.000114763,0.000149893,-0.765630605,0.444478658,neg,ns,0.211524066,Uncx,Uncx_Promoter,5,139537129,139537178,139537177,139537178,50,+,AATTAGAGCTAAGTTAACCTGATTTCCCTTAATTAAAACATCTTTTCTCG,Promoter (6-7kb),5,139543494,139548179,4686,1,Uncx-201,-6316,NA,NA,NA,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,22,88,22255,ENSMUSG00000029546,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
15953,cg19350040,-0.0000318,0.00000963,-3.300840378,0.001076441,loss,ns,0.0000344,0.0000164,2.104946163,0.036100508,pos,ns,0.01098916,0.004792547,2.292968884,0.022519069,pos,ns,1.647449561,-0.000384254,0.000164815,-2.331422187,0.020371743,neg,ns,0.775621132,Gm50420,Gm50420_Intergenic_downstream,18,83944823,83944872,83944823,83944824,50,+,CGATGGAGGTATAAGCAGGAGCTGTTTAAAATATTTAATCATTTTATGAA,Distal Intergenic,18,83905796,83905942,147,1,Gm50420-201,39027,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,9,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2383,cg08315393,-0.000106494,0.0000156,-6.805523184,5.21E-11,loss,yes,0.000056,0.0000266,2.104916927,0.036103073,pos,ns,-0.01204588,0.007788281,-1.546667464,0.122963682,neg,ns,0.910223142,0.000201483,0.000267838,0.752257723,0.452466886,pos,ns,0.602405259,Rorb,Rorb_Intergenic_upstream,19,19222780,19222829,19222828,19222829,50,+,AACAACCCACCAAATGGCGGCATCTGTGCTTATTTCCTCCCTGGTCCTCG,Distal Intergenic,19,18930605,19111196,180592,2,Rorb-203,-111584,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,10,225998,ENSMUSG00000036192,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20358,cg04699040,0.000182066,0.00000947,19.22773066,8.68E-55,gain,yes,-0.0000339,0.0000161,-2.104839175,0.036109895,neg,ns,0.000250317,0.004712791,0.053114376,0.957674988,pos,ns,0.018781855,0.000176456,0.000162072,1.08874637,0.27711142,pos,ns,0.342949062,Hoxc5,Hoxc5_Exon,15,103010766,103010815,103010766,103010767,50,-,CGCCAGATCTACTCGCGGTACCAGACCCTGGAACTGGAGAAGGAATTTCA,"Exon (Hoxc6-202/Hoxc6, exon 3 of 3)",15,102967443,103015676,48234,1,Hoxc5-202,43323,Hoxc5-202;Hoxc5-201;Hoxc6-202;Hoxc6-203;Hoxc6-201,Hoxc5;Hoxc5;Hoxc6;Hoxc6;Hoxc6,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,72,134,15424,ENSMUSG00000022485,mapped to different genes,15,103010738,103010782,45,*,45,8,0.711111111,1.411764706,0.177777778,1.77E-08,CpGisland,TRUE,U13,Hc-P
5722,cg23513041,-0.00000779,0.00000249,-3.133474046,0.001892655,loss,ns,-0.00000889,0.00000422,-2.104482537,0.036141204,neg,ns,-0.001417345,0.001236998,-1.14579387,0.252764175,neg,ns,0.59728448,0.00000397,0.0000425,0.093324169,0.925706317,pos,ns,0.95424249,Add1,Add1_Intron,5,34617454,34617503,34617502,34617503,50,-,AGCTGCCCTCTGCATGGACTGTTGCATGTGAGTAGACGGCCATAGTGGCG,"Intron (Add1-204/Add1, intron 10 of 15)",5,34573664,34632308,58645,1,Add1-204,43790,Add1-204;Add1-201;Add1-205;Add1-203;Add1-202;Add1-206;Add1-209;Add1-215;Add1-213;Add1-207;Add1-208,Add1;Add1;Add1;Add1;Add1;Add1;Add1;Add1;Add1;Add1;Add1,0;0;0;0;0;0;0;0;-1851;-2346;-2468,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,6,11518,ENSMUSG00000029106,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16406,cg27224586,0.00000376,0.0000149,0.25225005,0.801014957,gain,ns,0.0000534,0.0000254,2.104384526,0.036149813,pos,ns,0.022671754,0.007427491,3.052410681,0.002466634,pos,ns,2.607895351,-0.000530471,0.000255431,-2.076771085,0.038646122,neg,ns,0.469298465,Dmd,Dmd_Intron,X,84878270,84878319,84878270,84878271,50,-,CGGGTTTAAAAACCATTTCAGTGACACAATATAAGAATGGGCTTGGGAGA,"Intron (Dmd-203/Dmd, intron 60 of 78)",20,82948903,85206141,2257239,1,Dmd-203,1929367,Dmd-203;Dmd-215;Dmd-210;Dmd-213;Gm14770-201,Dmd;Dmd;Dmd;Dmd;Gm14770,0;0;0;0;-1568,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,28,13405,ENSMUSG00000045103,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6018,cg13788849,-0.0000117,0.00000372,-3.140494218,0.001849254,loss,ns,0.0000133,0.00000632,2.10408115,0.03617647,pos,ns,0.00060317,0.001850954,0.325869711,0.744742791,pos,ns,0.127993692,0.0000707,0.0000637,1.110425452,0.267676297,pos,ns,0.911857379,Cxxc5,Cxxc5_Intron,18,35855715,35855764,35855763,35855764,50,+,TTTTTGGGGGCTGGATGTGTTCCTGGCAGGGCCGATGATGGATGCGCCCG,"Intron (Gm50371-201/Gm50371-201, intron 4 of 4)",18,35829397,35859002,29606,1,Cxxc5-202,26318,Cxxc5-202;Cxxc5-201;Cxxc5-206;Cxxc5-203;Cxxc5-204;Cxxc5-205,Cxxc5;Cxxc5;Cxxc5;Cxxc5;Cxxc5;Cxxc5,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,49,67393,ENSMUSG00000046668,conserved gene and region,18,35855560,35855824,265,*,265,22,0.671698113,0.73685541,0.083018868,2.89E-15,CpGisland,TRUE,U8,En-Pd
22703,cg13777907,0.00000517,0.00000817,0.632670587,0.527415164,gain,ns,-0.0000292,0.0000139,-2.103964861,0.036186692,neg,ns,0.003805613,0.004067577,0.935596965,0.350208979,pos,ns,0.455672723,-0.000147682,0.000139884,-1.055752313,0.29190347,neg,ns,0.820249353,Sox6,Sox6_Intron,7,115754810,115754859,115754810,115754811,50,+,CGGCTGAGGAATAAGCTTAATAATTTTATGTTGTTTACACTGGAGGCAGT,"Intron (Sox6-210/Sox6, intron 4 of 15)",7,115470872,116031047,560176,2,Sox6-210,276188,Sox6-210;Sox6-201;Sox6-202;Sox6-204;Sox6-205;Sox6-203;Sox6-212;Sox6-206;Sox6-209;Sox6-214,Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,37,57,20679,ENSMUSG00000051910,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7022,cg07210941,0.000121498,0.0000236,5.140774786,0.000000486,gain,yes,-0.0000845,0.0000402,-2.103866507,0.03619534,neg,ns,0.026469163,0.011762968,2.250211313,0.025136469,pos,ns,1.599695727,-0.000919735,0.000404527,-2.273603304,0.023673496,neg,ns,0.338916028,Zfpm2,Zfpm2_Intron,15,40662181,40662230,40662229,40662230,50,+,TTGTTGTTACATCAGCAAAATATCAATATAGAAAGTGGACTCTCTGATCG,"Intron (Zfpm2-202/Zfpm2, intron 1 of 3)",15,40655035,40872723,217689,1,Zfpm2-202,7146,Zfpm2-202;Zfpm2-201;Zfpm2-204;Zfpm2-203,Zfpm2;Zfpm2;Zfpm2;Zfpm2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,41,22762,ENSMUSG00000022306,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9207,cg22359894,0.00000997,0.00000522,1.911132837,0.056909582,gain,ns,-0.0000186,0.00000886,-2.103776416,0.036203263,neg,ns,-0.002049718,0.002596699,-0.78935492,0.430507903,neg,ns,0.366018871,0.000136655,0.0000893,1.53029178,0.126964293,pos,ns,0.908749708,Ezh2,Ezh2_Exon,6,47541855,47541904,47541903,47541904,50,-,ACATTGACAAAACTTTTCACAAAAATTTTGTGCTATCACACAAGGGCACG,"Exon (Ezh2-201/Ezh2, exon 14 of 20)",6,47530139,47595030,64892,2,Ezh2-201,53126,Ezh2-214;Ezh2-201;Ezh2-203;Ezh2-204;Ezh2-202;Ezh2-210;Ezh2-207;Ezh2-206;Ezh2-208;Ezh2-209;Ezh2-215,Ezh2;Ezh2;Ezh2;Ezh2;Ezh2;Ezh2;Ezh2;Ezh2;Ezh2;Ezh2;Ezh2,-1120;0;0;0;0;-1146;0;0;0;12310;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,3,14056,ENSMUSG00000029687,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4561,cg04341060,0.0000138,0.00000594,2.31874556,0.02105892,gain,ns,0.0000212,0.0000101,2.103524927,0.036225387,pos,ns,-0.00153562,0.002955826,-0.519522948,0.60376685,neg,ns,0.219130736,-0.000120804,0.000101651,-1.1884209,0.235577255,neg,ns,0.674640498,Ntm,Ntm_Intron,9,29771527,29771576,29771575,29771576,50,+,CCCACTGCGGATGAGAAATAGACTTTTCCCTCATCCATCATAAGTCAGCG,"Intron (Ntm-201/Ntm, intron 1 of 7)",9,28994750,29963129,968380,2,Ntm-201,191553,Ntm-201;Ntm-204;Ntm-210;Ntm-207,Ntm;Ntm;Ntm;Ntm,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,27,32,235106,ENSMUSG00000059974,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5746,cg22689233,0.0000603,0.00000584,10.318402,1.19E-21,gain,yes,-0.0000209,0.00000992,-2.103484281,0.036228964,neg,ns,0.004821993,0.002907147,1.658668745,0.098193953,pos,ns,1.007915257,-0.000173084,0.0001,-1.731246962,0.084402659,neg,ns,0.113958216,Sox2,Sox2_Exon,3,34651209,34651258,34651209,34651210,50,+,CGCCCTGCCAGGCCGGGGACCTCCGGGACATGATCAGCATGTATCTCCCC,Promoter (<=1kb),3,34650405,34652461,2057,1,Sox2-201,804,Sox2-201,Sox2,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,62,20674,ENSMUSG00000074637,mapped to different genes,3,34650151,34651388,1238,*,1238,126,0.673667205,0.899335824,0.10177706,2.40E-96,CpGisland,TRUE,U13,Hc-P
15310,cg14799760.2,0.000126393,0.0000178,7.086328311,9.32E-12,gain,yes,-0.0000637,0.0000303,-2.103447555,0.036232196,neg,ns,0.0825335,0.008877232,9.297210842,2.66E-18,pos,yes,17.57434043,-0.00176061,0.000305287,-5.767059684,1.95E-08,neg,yes,0.745249034,Dazap1,Dazap1_Exon,10,80280919,80280968,80280919,80280920,50,+,CGTTGGCTAGGTTTTGGATTTATTACTTTCGAGGACGAACAATCAGTGGA,"Exon (Dazap1-207/Dazap1, exon 7 of 7)",10,80261486,80281005,19520,1,Dazap1-207,19433,Dazap1-207;Dazap1-203;Dazap1-202;Dazap1-201;Dazap1-205;Dazap1-204;Dazap1-206,Dazap1;Dazap1;Dazap1;Dazap1;Dazap1;Dazap1;Dazap1,0;0;0;0;15795;0;-1899,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,6,70248,ENSMUSG00000069565,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U5,En-Sd
25710,cg13991371,-0.00000819,0.00000487,-1.681002357,0.093769653,loss,ns,0.0000174,0.00000828,2.103427249,0.036233984,pos,ns,0.004854369,0.002424699,2.002049747,0.046150283,pos,ns,1.335825634,-0.000149317,0.0000834,-1.790689022,0.07431882,neg,ns,0.91867641,Lmo3,Lmo3_Intron,6,138514710,138514759,138514710,138514711,50,-,CGGGCAAATTTACGGTTGAGTTCTATTCTAATAAATCTCCAATTGTAAAC,"Intron (Lmo3-204/Lmo3, intron 1 of 4)",6,138362918,138581968,219051,2,Lmo3-204,67209,Lmo3-204,Lmo3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,38,109593,ENSMUSG00000030226,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4268,cg26607569,-0.0000124,0.00000818,-1.516191498,0.130489951,loss,ns,0.0000292,0.0000139,2.102944184,0.036276522,pos,ns,-0.00328475,0.004071261,-0.806814022,0.420392191,neg,ns,0.376345359,0.000368303,0.00014001,2.630540678,0.008950711,pos,ns,0.90366735,Anks1,Anks1_Exon,17,28042470,28042519,28042518,28042519,50,-,ACTATGATGTGGCAATGCCATCTATCTTCCTCTGAGTGCCGCTGCTACCG,"Exon (Anks1-208/Anks1, exon 1 of 3)",17,27909306,28062775,153470,1,Anks1-203,133164,Anks1-203;Anks1-202;Anks1-211;Anks1-201;Anks1-204;Anks1-213;Anks1-209;Anks1-208;Anks1-207,Anks1;Anks1;Anks1;Anks1;Anks1;Anks1;Anks1;Anks1;Anks1,0;0;0;0;0;0;0;0;-96,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,6,224650,ENSMUSG00000024219,conserved gene but different region,17,28042509,28042685,177,*,177,15,0.593220339,0.967565598,0.084745763,1.11E-10,CpGisland,TRUE,U10,Tr-S
10781,cg16589235,-0.00000516,0.00000182,-2.836987793,0.004854086,loss,ns,0.0000065,0.00000309,2.102923732,0.036278324,pos,ns,0.00134807,0.000904943,1.489673158,0.137326873,pos,ns,0.862244468,0.0000102,0.0000311,0.328766859,0.742553897,pos,ns,0.938445239,Vti1a,Vti1a_Intron,19,55390344,55390393,55390392,55390393,50,+,ATTTCAAGGAAAGCTTTGATGTGGCTTTAGCTGCCTCCAACGTCTGGCCG,"Intron (Vti1a-206/Vti1a, intron 4 of 7)",19,55316295,55577001,260707,1,Vti1a-206,74049,Vti1a-206;Vti1a-202;Vti1a-201;Vti1a-203,Vti1a;Vti1a;Vti1a;Vti1a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,32,53611,ENSMUSG00000024983,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21748,cg18099500,0.0000257,0.000006,4.277816752,0.0000252,gain,ns,-0.0000214,0.0000102,-2.102694027,0.036298567,neg,ns,-0.00244396,0.00298462,-0.818851475,0.41350019,neg,ns,0.383524286,-0.000139404,0.000102641,-1.358173704,0.175396191,neg,ns,0.918363301,Zfhx3,Zfhx3_Exon,8,108956382,108956431,108956430,108956431,50,-,GGTGCAGTACAAGTTGGTCTGCCGCAAGTGCCAGGCGGGCTTCAGCGACG,"Exon (Zfhx3-204/Zfhx3, exon 16 of 16)",8,107942644,108961630,1018987,1,Zfhx3-204,1013738,Zfhx3-204;Zfhx3-201,Zfhx3;Zfhx3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,46,177,11906,ENSMUSG00000038872,conserved gene and region,8,108956404,108956473,70,*,70,8,0.7,0.942760943,0.114285714,0.000000774,CpGisland,TRUE,U10,Tr-S
20398,cg05447476,0.0000234,0.00000417,5.609213795,0.000000045,gain,yes,0.0000149,0.00000709,2.102609693,0.036306002,pos,ns,0.009556421,0.002075842,4.603636012,0.00000607,pos,ns,5.217166567,-0.000271803,0.0000714,-3.807401209,0.000169262,neg,ns,0.088487055,Hoxc4,Hoxc4_Intron,15,103029310,103029359,103029358,103029359,50,+,CCCATCAATAACCCCATGGCAGTGAACTATTGGAACAAGTCAAACACCCG,"Intron (Hoxc4-202/Hoxc4, intron 1 of 3)",15,103018934,103036405,17472,1,Hoxc4-202,10376,Hoxc4-202,Hoxc4,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,91,15423,ENSMUSG00000075394,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
22009,cg04498434,-0.0000022,0.00000152,-1.451215892,0.147730927,loss,ns,0.00000542,0.00000258,2.102549319,0.036311325,pos,ns,0.001997354,0.000755857,2.642500771,0.008647493,pos,ns,2.063109805,-0.0000243,0.000026,-0.936671723,0.349656571,neg,ns,0.045933812,Dhx30,Dhx30_fiveUTR,9,110117328,110117377,110117328,110117329,50,+,CGAAAGGGGAGAATAAAAAGCCCAATTCACCTGTTGTTACAGATGTGAAA,Promoter (<=1kb),9,110084323,110117335,33013,2,Dhx30-224,0,Dhx30-215;Dhx30-219;Dhx30-212;Dhx30-203;Dhx30-204;Dhx30-202;Dhx30-224;Dhx30-222;Dhx30-207;Dhx30-225;Dhx30-210;Dhx30-211;Dhx30-208;Dhx30-221;Dhx30-217;Dhx30-213;Smarcc1-202,Dhx30;Dhx30;Dhx30;Dhx30;Dhx30;Dhx30;Dhx30;Dhx30;Dhx30;Dhx30;Dhx30;Dhx30;Dhx30;Dhx30;Dhx30;Dhx30;Smarcc1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;-220;0;-331,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,6,72831,ENSMUSG00000032480,conserved gene but different region,9,110116926,110117329,404,*,404,40,0.737623762,0.738675321,0.099009901,1.70E-30,CpGisland,TRUE,U1,Pr-A
21650,cg04241940,0.0000501,0.00000776,6.460785574,4.03E-10,gain,yes,-0.0000277,0.0000132,-2.102053393,0.036355076,neg,ns,0.021344899,0.003862572,5.526084342,6.95E-08,pos,ns,7.158089253,-0.000262844,0.000132834,-1.978749091,0.048729036,neg,ns,0.81778682,Zfhx3,Zfhx3_Intron,8,108775462,108775511,108775462,108775463,50,-,CGGTAAAATAATCTCATCAGGCGTGTGAGAGGGTAATAGGAAATAAAAAT,"Intron (Zfhx3-204/Zfhx3, intron 7 of 15)",8,107942644,108961630,1018987,1,Zfhx3-204,832818,Zfhx3-204;Zfhx3-202;Zfhx3-201,Zfhx3;Zfhx3;Zfhx3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,114,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16,cg23597596,-0.00000332,0.00000512,-0.64815992,0.517361305,loss,ns,-0.0000183,0.0000087,-2.101988736,0.036360784,neg,ns,-0.005723973,0.002548257,-2.246230458,0.025393117,neg,ns,1.595283994,0.000255448,0.0000876,2.914929359,0.003816809,pos,ns,0.901591437,Patz1,Patz1_Exon,11,3299058,3299107,3299058,3299059,50,+,CGAGACCGTCTGCGCTCCCACCTGGCCTGTCATGAAGACAAGGTGCCCTG,"Exon (Patz1-204/Patz1, exon 3 of 4)",11,3289167,3309083,19917,1,Patz1-204,9891,Patz1-204;Patz1-210;Patz1-207;Patz1-203;Patz1-205;Patz1-201;Patz1-202;Patz1-206;Patz1-211;Patz1-208;Patz1-212,Patz1;Patz1;Patz1;Patz1;Patz1;Patz1;Patz1;Patz1;Patz1;Patz1;Patz1,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,9,56218,ENSMUSG00000020453,mapped to different genes,11,3298967,3299071,105,*,105,9,0.628571429,0.880708295,0.085714286,0.00000139,CpGisland,TRUE,U10,Tr-S
2967,cg05100796,0.00000954,0.00000324,2.942672057,0.003499447,gain,ns,0.0000116,0.00000551,2.101984469,0.036361161,pos,ns,0.003371106,0.001613477,2.089342327,0.03749197,pos,ns,1.426061744,-0.00000364,0.0000555,-0.065526985,0.947796659,neg,ns,0.891714085,Lrmda,Lrmda_Intron,14,22192371,22192420,22192371,22192372,50,+,CGGACATTAAGATTAAGTGATGCTGTCGTGTTGAGGAGCACGGCACTGCA,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,172659,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206,Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,14,22192352,22192427,76,*,76,8,0.565789474,1.375565611,0.105263158,0.00000148,CpGisland,TRUE,U11,Tr-P
24970,cg19915213,0.0000242,0.00000536,4.515204224,0.000009,gain,ns,-0.0000191,0.0000091,-2.101966274,0.036362767,neg,ns,-0.003267709,0.002665467,-1.225942321,0.221150853,neg,ns,0.655311382,0.0000729,0.0000917,0.795097736,0.427164978,pos,ns,0.111932253,Ebf4,Ebf4_Exon,2,130365450,130365499,130365450,130365451,50,+,CGCCCCGGAGTCATGCCCTCTAGCCCCCCGCTGGCGGCTGCCTCCTCCAT,"Exon (Ebf4-203/Ebf4, exon 16 of 18)",2,130295169,130370481,75313,1,Ebf4-203,70281,Ebf4-203;Ebf4-201;Ebf4-202;Ebf4-204;Ebf4-205;Ebf4-206,Ebf4;Ebf4;Ebf4;Ebf4;Ebf4;Ebf4,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,3,228598,ENSMUSG00000053552,conserved gene and region,2,130365359,130365620,262,*,262,19,0.679389313,0.735846268,0.072519084,3.66E-12,CpGisland,TRUE,U3,Pr-B
11715,cg06460404,-0.0000026,0.00000157,-1.66176592,0.097570575,loss,ns,0.00000559,0.00000266,2.101888932,0.036369595,pos,ns,0.001759923,0.000779727,2.257101329,0.024697597,pos,ns,1.607345304,-0.0000599,0.0000268,-2.234519482,0.026161383,neg,ns,0.97215506,Fam204a,Fam204a_Intron,19,60204136,60204185,60204136,60204137,50,+,CGGAACCATTACTGGAGTACTTAAAGTGTTAAGGTCTTTAATTTTTATAT,"Intron (Fam204a-201/Fam204a, intron 6 of 7)",19,60198586,60226697,28112,2,Fam204a-201,22512,Fam204a-201;Fam204a-203;Fam204a-202;Fam204a-206;Fam204a-205;Fam204a-207,Fam204a;Fam204a;Fam204a;Fam204a;Fam204a;Fam204a,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,14,76539,ENSMUSG00000057858,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
636,cg22940717,0.0000694,0.0000135,5.129945424,0.000000512,gain,yes,0.0000483,0.000023,2.10184874,0.036373144,pos,ns,0.024066431,0.006735472,3.573087763,0.000408924,pos,ns,3.388357116,-0.000372374,0.000231632,-1.60760967,0.108938676,neg,ns,0.321175966,Usp27x,Usp27x_Exon,X,7376166,7376215,7376166,7376167,50,+,CGTGTTAAAATTACAGATTCCTTGGCTCCACCCGCAGGCCTACTGAATCA,Promoter (<=1kb),20,7372591,7375830,3240,2,Usp27x-201,-336,Usp27x-202;Usp27x-203;Usp27x-201,Usp27x;Usp27x;Usp27x,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,6,54651,ENSMUSG00000046269,mapped to different genes,X,7376028,7376263,236,*,236,17,0.584745763,0.849100529,0.072033898,6.88E-11,CpGisland,TRUE,NA,NRS
7824,cg04361843,0.00000538,0.00000212,2.537892257,0.011641658,gain,ns,-0.00000756,0.0000036,-2.101488639,0.036404955,neg,ns,0.000228954,0.001054348,0.217152152,0.828232619,pos,ns,0.081847669,-0.000021,0.0000363,-0.578465082,0.563370173,neg,ns,0.966105678,Gtdc1,Gtdc1_Intergenic_downstream,2,44463156,44463205,44463156,44463157,50,+,CGCTTACATAAATGGAGCTTAAGGGGCATTTATCTGACTGTAAAAATCAT,Distal Intergenic,2,44565133,44571347,6215,2,Gtdc1-207,108142,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,43,227835,ENSMUSG00000036890,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10100,cg06855624,0.000245915,0.0000227,10.83602021,2.05E-23,gain,yes,-0.000081,0.0000386,-2.101238265,0.036427086,neg,ns,0.025281734,0.011295124,2.238287396,0.025912025,pos,ns,1.586498643,-0.000877418,0.000388438,-2.25883489,0.02458823,neg,ns,0.257152134,Gm28308,Gm28308_Intron,6,52175526,52175575,52175526,52175527,50,-,CGGCTTGTGAACTCTTCTTGAACCGAGATTTAAGTCTGCAGCCATAAATC,"Intron (Hoxaas3-203/Hoxaas3-203, intron 1 of 1)",6,52163359,52213339,49981,2,Gm28308-201,37764,Gm28308-201;Hoxa3-201;Hoxa3-202;Hoxa3-204,Gm28308;Hoxa3;Hoxa3;Hoxa3,0;0;0;9299,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,46,103,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
2572,cg08541523,-0.00000384,0.00000821,-0.468065403,0.640066727,loss,ns,0.0000293,0.000014,2.100525598,0.036490144,pos,ns,-0.001082358,0.004087464,-0.26479944,0.791339945,neg,ns,0.101636911,0.0000684,0.000140568,0.486803621,0.626741505,pos,ns,0.72265635,Rbm10,Rbm10_Exon,X,20637614,20637663,20637614,20637615,50,+,CGTCATGCTGAGGATGCTGCCACAGGCAGCCACTGAGGATGACGTACGTG,"Exon (Rbm10-205/Rbm10, exon 4 of 24)",20,20617503,20650888,33386,1,Rbm10-205,20111,Rbm10-205;Rbm10-204;Rbm10-203;Rbm10-206;Rbm10-201;Rbm10-202;Rbm10-207,Rbm10;Rbm10;Rbm10;Rbm10;Rbm10;Rbm10;Rbm10,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,14,236732,ENSMUSG00000031060,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10954,cg06457419,-0.00000179,0.000000758,-2.363950216,0.01869763,loss,ns,0.00000271,0.00000129,2.100436398,0.036498044,pos,ns,0.00074994,0.000377342,1.987428873,0.047754553,pos,ns,1.320985214,-0.0000133,0.000013,-1.02382739,0.306715077,neg,ns,0.981412778,Tcf7l2,Tcf7l2_Intron,19,55912265,55912314,55912265,55912266,50,+,CGCCTTTAATTATTACAACAAAACACCTAGTTTCAGCTTGGGGAGAGGGT,"Intron (Tcf7l2-213/Tcf7l2, intron 6 of 13)",19,55741820,55933229,191410,1,Tcf7l2-213,170445,Tcf7l2-213;Tcf7l2-201;Tcf7l2-208;Tcf7l2-211;Tcf7l2-212;Tcf7l2-206;Tcf7l2-204;Tcf7l2-205;Tcf7l2-222;Tcf7l2-215;Tcf7l2-214;Tcf7l2-207;Tcf7l2-202;Tcf7l2-209;Tcf7l2-210;Tcf7l2-217;Tcf7l2-220;Tcf7l2-218;Tcf7l2-203;Tcf7l2-216;Tcf7l2-219;Tcf7l2-221,Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,55,88,21416,ENSMUSG00000024985,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9285,cg25861692,-0.00000826,0.0000097,-0.851802054,0.394981508,loss,ns,0.0000346,0.0000165,2.100423826,0.036499157,pos,ns,0.001330321,0.004826088,0.27565208,0.782998959,pos,ns,0.106238816,0.000123036,0.000165969,0.741318986,0.459061253,pos,ns,0.706394003,Gm47213,Gm47213_Intergenic_downstream,9,47882542,47882591,47882542,47882543,50,-,CGCTGTGAAGAGCTAATCTGTGCAGAGCTAATAAGAATGAACAAAGTCAC,Distal Intergenic,9,47947880,47948161,282,2,Gm47213-201,65619,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,7,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15945,cg08904514,-0.0000415,0.0000733,-0.565881013,0.571884047,loss,ns,0.000261386,0.000124452,2.100292887,0.036510755,pos,ns,0.024480848,0.036460278,0.671438867,0.502441011,pos,ns,0.298914919,0.00017573,0.001253866,0.14015093,0.888631757,pos,ns,0.241050907,Haao,Haao_Intergenic_upstream,17,83938942,83938991,83938990,83938991,50,+,CAGAACAAATCTTTAATGAACCAGCTTGCGGGGAGAGCCATTAGCAGCCG,Distal Intergenic,17,83837173,83847963,10791,2,Haao-205,-90979,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,6,107766,ENSMUSG00000000673,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24165,cg27216483,0.0000155,0.00000406,3.819711802,0.000161396,gain,ns,-0.0000145,0.0000069,-2.100117859,0.036526264,neg,ns,0.008179089,0.002020192,4.048669095,0.0000651,pos,ns,4.186241607,-0.000177692,0.0000695,-2.557672179,0.011013076,neg,ns,0.063801556,Tnrc6a,Tnrc6a_Intron,7,123125080,123125129,123125080,123125081,50,-,CGGCCCTTATGGCGGGCTGTCAAACTGTTTTGGCTTCCCCGTTATTACTT,"Intron (Gm45846-201/Gm45846-201, intron 2 of 2)",7,123123885,123162663,38779,1,Tnrc6a-209,1195,Tnrc6a-209;Tnrc6a-203;Tnrc6a-201;Tnrc6a-210,Tnrc6a;Tnrc6a;Tnrc6a;Tnrc6a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,24,233833,ENSMUSG00000052707,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16221,cg04537173,0.00000567,0.0000025,2.268698536,0.023973944,gain,ns,-0.00000891,0.00000424,-2.099776045,0.036556567,neg,ns,-0.000596743,0.0012428,-0.480160353,0.631452008,neg,ns,0.199659651,0.0000484,0.0000427,1.133596414,0.257839777,pos,ns,0.953361378,Lhx1,Lhx1_Intergenic_upstream,11,84611023,84611072,84611071,84611072,50,+,AAGACTCACGGCAATTTTATGACTTGCTAATGTTCCTAATTACATGCCCG,Distal Intergenic,11,84518284,84525535,7252,2,Lhx1-201,-85488,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,20,23,16869,ENSMUSG00000018698,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7475,cg20945212,0.0000803,0.00000983,8.167180652,8.07E-15,gain,yes,-0.0000351,0.0000167,-2.09975642,0.036558308,neg,ns,-0.015905194,0.00489108,-3.251877444,0.001272751,neg,ns,2.895256721,0.000497381,0.000168204,2.957012932,0.003345031,pos,ns,0.736067041,Ppp2r2b,Ppp2r2b_Exon,18,42741144,42741193,42741144,42741145,50,+,CGCTAGTAATTCTCCCGTGTGGTTGAATTCTACCGTAGAGATAATGTCAG,"Exon (Ppp2r2b-204/Ppp2r2b, exon 2 of 9)",18,42637432,42899503,262072,2,Ppp2r2b-204,158310,Ppp2r2b-204;Ppp2r2b-202;Ppp2r2b-201;Ppp2r2b-203;Ppp2r2b-208;Ppp2r2b-207;Ppp2r2b-205,Ppp2r2b;Ppp2r2b;Ppp2r2b;Ppp2r2b;Ppp2r2b;Ppp2r2b;Ppp2r2b,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,15,72930,ENSMUSG00000024500,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8473,cg09545510,-0.00000572,0.00000827,-0.691667238,0.489664005,loss,ns,0.0000295,0.000014,2.099646193,0.036568085,pos,ns,0.015055703,0.004114003,3.659624021,0.000296788,pos,ns,3.527554108,-0.000351198,0.00014148,-2.482308427,0.013582616,neg,ns,0.210425931,Lbx1,Lbx1_Intergenic_downstream,19,45223432,45223481,45223480,45223481,50,+,ACAGCTACATAATTAGAATTTGGATTCCCATTAATTTTCCTTGGGCCTCG,Distal Intergenic,19,45232684,45235812,3129,2,Lbx1-201,12331,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,30,50,16814,ENSMUSG00000025216,mapped to different genes,19,45223480,45223664,185,*,185,15,0.637837838,0.831585256,0.081081081,2.12E-10,CpGisland,TRUE,U13,Hc-P
21554,cg17606981,-0.0000112,0.00000549,-2.03253028,0.042952056,loss,ns,0.0000196,0.00000933,2.099092553,0.036617226,pos,ns,0.006419576,0.002732824,2.349063405,0.019448183,pos,ns,1.711120968,-0.000208921,0.000094,-2.222995212,0.026937028,neg,ns,0.889212323,Ppp1r12a,Ppp1r12a_Exon,10,108273376,108273425,108273424,108273425,50,-,AATGGTTTGTATCTGAAAGGTGACCGGCAAGAGTCAGTATCTTCTGGGCG,"Exon (Ppp1r12a-201/Ppp1r12a, exon 24 of 26)",10,108162193,108277351,115159,1,Ppp1r12a-205,111183,Ppp1r12a-205;Ppp1r12a-201;Ppp1r12a-208;Ppp1r12a-202;Ppp1r12a-207;Ppp1r12a-206,Ppp1r12a;Ppp1r12a;Ppp1r12a;Ppp1r12a;Ppp1r12a;Ppp1r12a,0;0;0;0;6279;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,8,17931,ENSMUSG00000019907,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15546,cg23112405,-0.0000295,0.0000105,-2.796506983,0.005488491,loss,ns,0.0000376,0.0000179,2.099085761,0.036617829,pos,ns,-0.004320515,0.005245231,-0.823703482,0.410741308,neg,ns,0.386431618,-0.000262606,0.000180383,-1.455825665,0.146452784,neg,ns,0.647743682,Gm19311,Gm19311_Exon,14,81685898,81685947,81685946,81685947,50,-,CAATTCAGTTGAGTACCATTGGGATTTGGATAACACCGAGCCTCCTGTCG,"Exon (Gm41219-201/Gm41219-201, exon 1 of 2)",14,81703206,81703671,466,2,Gm19311-201,17773,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,100502666,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1703,cg08107449,-0.0000154,0.00000462,-3.334929176,0.000956808,loss,ns,-0.0000165,0.00000784,-2.098825608,0.03664094,neg,ns,-0.005040022,0.002297019,-2.194157469,0.028965934,neg,ns,1.538112458,-0.0000681,0.000079,-0.862040811,0.389331397,neg,ns,0.876520977,Ss18,Ss18_threeUTR,18,14637398,14637447,14637398,14637399,50,-,CGTAGTAATGTTGTGAGGAATCCTCATAAGGCCTATCGTAGCCTTGTTCA,Promoter (<=1kb),18,14633542,14637406,3865,2,Ss18-212,0,Ss18-202;Ss18-201;Ss18-210;Ss18-203;Ss18-206;Ss18-205;Ss18-212;Ss18-204;Ss18-209;Ss18-211,Ss18;Ss18;Ss18;Ss18;Ss18;Ss18;Ss18;Ss18;Ss18;Ss18,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,5,10,268996,ENSMUSG00000037013,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15026,cg06539542,0.0000182,0.00000508,3.57505142,0.000405989,gain,ns,-0.0000181,0.00000864,-2.098699812,0.03665212,neg,ns,0.001795686,0.002530302,0.709672352,0.478440783,pos,ns,0.320171808,-0.00000936,0.000087,-0.107507952,0.914455562,neg,ns,0.919977949,Slc10a7,Slc10a7_Intron,8,78550622,78550671,78550622,78550623,50,-,CGTGGGGCTGAAGATCAAAGATACCTGAGAATTACTTATGGGCACATAGT,"Intron (Slc10a7-211/Slc10a7, intron 4 of 10)",8,78509346,78712757,203412,1,Slc10a7-211,41276,Slc10a7-211;Slc10a7-202;Slc10a7-201;Slc10a7-207;Slc10a7-209;Slc10a7-204;Slc10a7-206,Slc10a7;Slc10a7;Slc10a7;Slc10a7;Slc10a7;Slc10a7;Slc10a7,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,6,76775,ENSMUSG00000031684,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3075,cg23110082,-0.0000295,0.00000835,-3.52800665,0.000482052,loss,ns,0.0000298,0.0000142,2.098537617,0.036666539,pos,ns,-0.003110343,0.004157585,-0.748112864,0.454959246,neg,ns,0.342027504,0.0000519,0.000142979,0.362692563,0.717081711,pos,ns,0.778652563,Lrmda,Lrmda_Intron,14,22546494,22546543,22546494,22546495,50,+,CGATTTTGGGTCATTAACCCTTGTTCTGCTTATGGCAGCAAATGACTTCA,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,526782,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206;Lrmda-202,Lrmda;Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23388,cg06149706,0.000025,0.0000103,2.419598066,0.016112759,gain,ns,0.0000369,0.0000176,2.098514431,0.036668601,pos,ns,0.013929267,0.005150306,2.704551472,0.007217575,pos,ns,2.141608681,-0.000251823,0.000177119,-1.4217753,0.156096768,neg,ns,0.192553513,Sox21,Sox21_Intergenic_downstream,14,118230398,118230447,118230446,118230447,50,-,TTGTCATTCAGTTTATCCAGTTTTGGTCACCCATTTTATTTATTTATGCG,Distal Intergenic,14,118233232,118237030,3799,2,Sox21-201,6632,Sox21-201,Sox21,6583,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,26,27,223227,ENSMUSG00000061517,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
20951,cg17672171,-0.0000047,0.00000231,-2.039809995,0.042216697,loss,ns,-0.00000822,0.00000392,-2.098470958,0.036672466,neg,ns,-0.000903592,0.001147381,-0.787525801,0.431575839,neg,ns,0.364942877,0.0000592,0.0000395,1.499254483,0.134825285,pos,ns,0.926172029,Papola,Papola_threeUTR,12,105812341,105812390,105812341,105812342,50,-,CGTACAATGTGTCCGTTTCAACACGGATGGTCATGGTTGAGGAGTTTAAA,Promoter (<=1kb),12,105812351,105829246,16896,1,Papola-206,0,Papola-202;Papola-212;Papola-201;Papola-219;Papola-203;Papola-210;Papola-208;Papola-207;Papola-214;Papola-217;Papola-211;Papola-215;Papola-204;Papola-213;Papola-218;Papola-209;Papola-206,Papola;Papola;Papola;Papola;Papola;Papola;Papola;Papola;Papola;Papola;Papola;Papola;Papola;Papola;Papola;Papola;Papola,0;0;0;27630;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,8,18789,ENSMUSG00000021111,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2397,cg13908214,-0.00000743,0.00000708,-1.04824184,0.295343759,loss,ns,0.0000253,0.000012,2.098445869,0.036674698,pos,ns,0.009959903,0.003526104,2.824619514,0.005040461,pos,ns,2.297529702,-0.000280727,0.000121262,-2.315035611,0.021263832,neg,ns,0.393732651,Tfap2b,Tfap2b_Intergenic_downstream,1,19245181,19245230,19245229,19245230,50,-,ATTCATTAATTTACTGTTTAACCAAATCCCACTCATTATCAGAGGCAACG,Distal Intergenic,1,19213879,19219253,5375,1,Tfap2b-203,31351,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,40,21419,ENSMUSG00000025927,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15610,cg19715364,-0.00000623,0.00000194,-3.208916844,0.001471837,loss,ns,0.00000692,0.0000033,2.098293729,0.03668823,pos,ns,0.001935276,0.000966436,2.002488282,0.046102878,pos,ns,1.336271965,-0.0000627,0.0000332,-1.887307478,0.060053038,neg,ns,0.956374912,Nfib,Nfib_threeUTR,4,82292694,82292743,82292742,82292743,50,+,ATTCTTAACAAAACTATACAGTGTACAAATTACTGTCTACAAGGTAGGCG,3' UTR,4,82290173,82505308,215136,2,Nfib-201,212565,Nfib-201;Nfib-203;Nfib-202;Nfib-205;Nfib-206;Nfib-204,Nfib;Nfib;Nfib;Nfib;Nfib;Nfib,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,11,66,18028,ENSMUSG00000008575,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4675,cg26041637,0.000019,0.00000304,6.242420373,1.42E-09,gain,yes,-0.0000108,0.00000517,-2.098246164,0.036692461,neg,ns,0.000629853,0.001514906,0.415770483,0.67786562,pos,ns,0.168856392,-0.00000615,0.0000521,-0.118085124,0.906076686,neg,ns,0.811471217,Cacna1d,Cacna1d_Exon,14,30089857,30089906,30089857,30089858,50,-,CGATTACGATGAGGGAGTCAAACGTGTTCCAGGCGTCACTAAAATACCCC,"Exon (Cacna1d-202/Cacna1d, exon 30 of 47)",14,30039941,30491453,451513,2,Cacna1d-202,401547,Cacna1d-202;Cacna1d-201;Cacna1d-208;Cacna1d-209;Cacna1d-214;Cacna1d-204;Cacna1d-207;Cacna1d-218;Cacna1d-216;Cacna1d-217;Cacna1d-210;Cacna1d-219,Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,26,12289,ENSMUSG00000015968,conserved gene and region,14,30089796,30089891,96,*,96,9,0.572916667,1.145888594,0.09375,0.000000648,CpGisland,TRUE,U11,Tr-P
26666,cg13833853,-0.00000367,0.00000192,-1.907475798,0.057382953,loss,ns,0.00000685,0.00000326,2.098193148,0.036697178,pos,ns,0.001218606,0.000956523,1.273995166,0.203619415,pos,ns,0.691180814,-0.0000575,0.0000329,-1.748318678,0.081398763,neg,ns,0.959702321,Gm6439,Gm6439_Intergenic_downstream,3,150296761,150296810,150296761,150296762,50,+,CGCTCATCTTGCAATCAGTTGGTGTCTTTTTATAAATGTTACAAGTATTC,Distal Intergenic,3,150515220,150516081,862,2,Gm6439-201,219271,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,3,623554,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3983,cg09474736,0.000109831,0.000017,6.444268454,4.44E-10,gain,yes,-0.0000607,0.000029,-2.098046371,0.03671024,neg,ns,0.013629755,0.008482551,1.606799017,0.109116517,pos,ns,0.962109505,-0.000152419,0.000291714,-0.522493944,0.601699648,neg,ns,0.415646828,Gm7847,Gm7847_Intron,18,26146609,26146658,26146657,26146658,50,+,CCATATTTCTCAGTGTCATGTTTCATTATGTTGAACTATTTATGTCATCG,"Intron (Gm33228-201/Gm33228-201, intron 7 of 13)",18,25823581,25824357,777,2,Gm7847-201,-322252,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,22,665916,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19063,cg15635095,0.0000181,0.00000586,3.093765942,0.00215635,gain,ns,0.0000209,0.00000995,2.097833812,0.036729163,pos,ns,-0.000753473,0.002914097,-0.258561581,0.796145117,neg,ns,0.099007764,0.000102429,0.000100216,1.022086044,0.307537119,pos,ns,0.875298013,Ar,Ar_Exon,X,98315968,98316017,98315968,98315969,50,+,CGCTTCTACCAGCTCACCAAGCTCCTGGACTCCGTGCAGCCTGTAAGCAA,"Exon (Ar-201/Ar, exon 7 of 8)",20,98148769,98323215,174447,1,Ar-201,167199,Ar-201,Ar,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,11835,ENSMUSG00000046532,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2301,cg06750538,-0.0000169,0.000012,-1.404665545,0.161121938,loss,ns,0.0000428,0.0000204,2.097703947,0.036740728,pos,ns,0.009943554,0.005981064,1.662505787,0.097422131,pos,ns,1.011342374,-0.000203026,0.000205688,-0.987055242,0.324385324,neg,ns,0.459911291,Meis1,Meis1_Intron,11,18989822,18989871,18989870,18989871,50,+,TACAGCACCCAGGGGACAGACAATGCCAGGCACAAAACCCCGGTGCCTCG,"Intron (Meis1-206/Meis1, intron 6 of 9)",11,18879817,19018985,139169,2,Meis1-206,29114,Meis1-206;Meis1-202;Meis1-209;Meis1-201;Meis1-203;Meis1-208;Meis1-207;Meis1-204,Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,88,17268,ENSMUSG00000020160,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26400,cg21728414,-0.00000131,0.00000124,-1.063175787,0.288529722,loss,ns,0.00000441,0.0000021,2.097689575,0.036742008,pos,ns,0.000243747,0.000615421,0.396066209,0.692328648,pos,ns,0.159687697,0.000011,0.0000212,0.520772617,0.602896946,pos,ns,0.035622823,Gsx1,Gsx1_Intergenic_downstream,5,147223482,147223531,147223530,147223531,50,-,CTCTTATCTATCAGATTAAAAGAGCAGCTTGTAACAAATCAGTCTGCTCG,Distal Intergenic,5,147188696,147190947,2252,1,Gsx1-201,34835,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,12,20,14842,ENSMUSG00000053129,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
794,cg22308672,-0.00000604,0.00000367,-1.644807033,0.101023209,loss,ns,0.0000131,0.00000624,2.097308044,0.036776005,pos,ns,0.004010061,0.001828311,2.193314063,0.029027211,pos,ns,1.537194692,-0.000116792,0.0000629,-1.85751757,0.064185671,neg,ns,0.935186465,Pum2,Pum2_threeUTR,12,8744651,8744700,8744699,8744700,50,+,CGTATTCGTGGTCATGTTCTACCCTTAGCCTTGCAGATGTATGGCTGCCG,3' UTR,12,8674134,8751454,77321,1,Pum2-203,70517,Pum2-203;Pum2-216;Pum2-201;Pum2-202;Pum2-207;Pum2-204;Pum2-210;Pum2-209;Pum2-206;Pum2-215,Pum2;Pum2;Pum2;Pum2;Pum2;Pum2;Pum2;Pum2;Pum2;Pum2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,7,11,80913,ENSMUSG00000020594,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21658,cg25686395,-0.00000757,0.00000242,-3.126796978,0.001934805,loss,ns,0.00000862,0.00000411,2.097278056,0.036778678,pos,ns,-0.000737181,0.001204679,-0.611931388,0.54103169,neg,ns,0.266777296,0.000026,0.0000414,0.628566371,0.530095825,pos,ns,0.945371378,Zfhx3,Zfhx3_Exon,8,108792859,108792908,108792859,108792860,50,+,CGGGAAATGGTTTGAGGGCCCAGACCAGGCTTTCCCGAATACCTCAGCCC,"Exon (Zfhx3-204/Zfhx3, exon 8 of 16)",8,107942644,108961630,1018987,1,Zfhx3-204,850215,Zfhx3-204;Zfhx3-202;Zfhx3-201,Zfhx3;Zfhx3;Zfhx3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,46,177,11906,ENSMUSG00000038872,conserved gene and region,8,108792801,108793013,213,*,213,13,0.563380282,0.791142857,0.061032864,0.000000139,CpGisland,TRUE,U10,Tr-S
24372,cg03187959,-0.0000176,0.000012,-1.465545024,0.143785795,loss,ns,-0.0000428,0.0000204,-2.096809974,0.036820426,neg,ns,0.029099371,0.005976058,4.869325365,0.00000179,pos,ns,5.74771756,-0.001894705,0.000205516,-9.219250259,4.72E-18,neg,yes,0.326324776,Ing4,Ing4_Exon,6,125046920,125046969,125046968,125046969,50,+,TGACAAGTTGGCCACTGAGTATATGAGTAGTGCCCGCAGCCTGAGCTCCG,"Exon (Ing4-205/Ing4, exon 3 of 8)",6,125039760,125049002,9243,1,Ing4-205,7160,Acrbp-205;Acrbp-204;Acrbp-202;Acrbp-201;Acrbp-203;Ing4-205;Ing4-203;Ing4-201;Ing4-208;Ing4-207;Ing4-202;Ing4-209;Ing4-204;Ing4-206,Acrbp;Acrbp;Acrbp;Acrbp;Acrbp;Ing4;Ing4;Ing4;Ing4;Ing4;Ing4;Ing4;Ing4;Ing4,-2720;-2978;-2990;-2998;-4885;0;7084;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,5,28019,ENSMUSG00000030330,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26136,cg22235058,-0.00005,0.00000801,-6.232452328,1.50E-09,loss,yes,0.0000285,0.0000136,2.096688585,0.03683126,pos,ns,-0.000962234,0.003989125,-0.241214434,0.809548389,neg,ns,0.091757187,-0.0000478,0.000137186,-0.348753964,0.727510773,neg,ns,0.745990088,Shank2,Shank2_fiveUTR,7,144175893,144175942,144175893,144175894,50,+,CGGACCGCTGCCAAAGTCAGAGGGAAAATGAAGTCTTTGTTAAATGCCTT,5' UTR,7,144001928,144424494,422567,1,Shank2-203,173965,Shank2-203;Shank2-206;Shank2-202,Shank2;Shank2;Shank2,0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,5,210274,ENSMUSG00000037541,conserved gene and region,7,144175748,144175899,152,*,152,19,0.736842105,0.922094508,0.125,8.97E-17,CpGisland,TRUE,U11,Tr-P
10380,cg22693978,0.0000187,0.00000272,6.866597426,3.60E-11,gain,yes,0.0000097,0.00000463,2.096179196,0.036876749,pos,ns,0.003824223,0.00135574,2.820763181,0.005099887,pos,ns,2.292439409,-0.0000579,0.0000466,-1.241392176,0.215399398,neg,ns,0.085486114,Creb5,Creb5_fiveUTR,6,53287267,53287316,53287267,53287268,50,+,CGGGGGGGTGATGTAATGCACTCTAAATAGAATGTATTGTAATCTTTGCT,Promoter (<=1kb),6,53287270,53391409,104140,1,Creb5-214,0,Creb5-214;Creb5-203;Creb5-213;Creb5-208;Creb5-211;Creb5-210;Creb5-209;Creb5-204;Creb5-207;Creb5-215;Creb5-202,Creb5;Creb5;Creb5;Creb5;Creb5;Creb5;Creb5;Creb5;Creb5;Creb5;Creb5,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,7,12,231991,ENSMUSG00000053007,conserved gene but different region,6,53287053,53287268,216,*,216,28,0.703703704,1.047272727,0.12962963,4.44E-25,CpGisland,TRUE,U3,Pr-B
24756,cg26830742,-0.0000275,0.00000523,-5.253535077,0.000000278,loss,yes,0.0000186,0.00000889,2.095257429,0.036959188,pos,ns,-0.001541031,0.002604271,-0.59173215,0.554461238,neg,ns,0.256128809,-0.000087,0.0000896,-0.971086252,0.332262399,neg,ns,0.911249594,Gm43656,Gm43656_Intergenic_upstream,3,128344112,128344161,128344160,128344161,50,-,CCTGACAATATGTTGCCATGCTATAAAAGCCCTAATGCCCATTTTCAACG,Distal Intergenic,3,128280658,128281091,434,2,Gm43656-201,-63070,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,8,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3935,cg12109350,0.0000165,0.000006,2.753657143,0.006241136,gain,ns,-0.0000214,0.0000102,-2.09521535,0.036962955,neg,ns,-0.0031162,0.002987145,-1.043203478,0.297666892,neg,ns,0.526269467,-0.0000298,0.000102728,-0.289617273,0.772302658,neg,ns,0.792913875,Trp63,Trp63_Exon,16,25820401,25820450,25820449,25820450,50,+,ACCTGGGGCTCCTGAACAGCATGGACCAGCAGATTCAGAACGGCTCCTCG,"Exon (Trp63-206/Trp63, exon 4 of 4)",16,25683763,25821318,137556,1,Trp63-206,136638,Trp63-206;Trp63-207;Trp63-202;Trp63-208;Trp63-203;Trp63-204;Trp63-201;Trp63-205,Trp63;Trp63;Trp63;Trp63;Trp63;Trp63;Trp63;Trp63,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,8,22061,ENSMUSG00000022510,conserved gene and region,16,25820441,25820504,64,*,64,7,0.65625,1.142857143,0.109375,0.00000723,CpGisland,TRUE,U15,NS
8464,cg18127966,-0.00000222,0.00000132,-1.67645758,0.094656712,loss,ns,0.00000471,0.00000225,2.095131639,0.03697045,pos,ns,0.001523451,0.00065897,2.311865764,0.021440292,pos,ns,1.668769311,0.0000018,0.0000227,0.079623263,0.936588267,pos,ns,0.036492797,Gpr137c,Gpr137c_fiveUTR,14,45219728,45219777,45219728,45219729,50,-,CGAGCGCCTCAAATGCTCGGGTTTCTCAGCTGATTGTCTCCAGCCGAGAG,Promoter (<=1kb),14,45219717,45224713,4997,1,Gpr137c-207,11,Gpr137c-207;Gpr137c-202;Gpr137c-205;Gpr137c-201;Gpr137c-206;Gpr137c-204;Txndc16-205;Txndc16-201;Txndc16-203;Txndc16-207;Txndc16-204;Txndc16-206;Txndc16-209;Txndc16-211;Txndc16-208;Txndc16-202,Gpr137c;Gpr137c;Gpr137c;Gpr137c;Gpr137c;Gpr137c;Txndc16;Txndc16;Txndc16;Txndc16;Txndc16;Txndc16;Txndc16;Txndc16;Txndc16;Txndc16,0;0;0;0;0;0;-303;-334;0;-338;-346;-331;-326;-332;-364;-338,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,6,70713,ENSMUSG00000049092,conserved gene and region,14,45219666,45220343,678,*,678,91,0.743362832,0.97309318,0.134218289,3.65E-82,CpGisland,TRUE,U6,En-Sp
2375,cg25909970,0.0000194,0.00000846,2.290388263,0.02267001,gain,ns,0.0000301,0.0000144,2.094751168,0.037004533,pos,ns,0.007461568,0.004209073,1.772734137,0.077254747,pos,ns,1.112074827,-0.000281865,0.00014475,-1.947261613,0.052406094,neg,ns,0.169770574,Tfap2b,Tfap2b_Intron,1,19217424,19217473,19217424,19217425,50,-,CGATCCTCCCTGTGACGATTAAGCGCCAGCATGCTGCGTGAATATCCTGT,"Intron (Tfap2b-201/Tfap2b, intron 2 of 6)",1,19208914,19238576,29663,1,Tfap2b-201,8510,Tfap2b-201;Tfap2b-204;Tfap2b-202;Tfap2b-205;Tfap2b-203,Tfap2b;Tfap2b;Tfap2b;Tfap2b;Tfap2b,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,40,21419,ENSMUSG00000025927,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
20562,cg18234452,0.000115273,0.0000144,8.006368719,2.40E-14,gain,yes,-0.0000512,0.0000245,-2.094748172,0.037004801,neg,ns,0.010355715,0.00716587,1.445144106,0.149427489,pos,ns,0.825569502,-0.000189984,0.000246434,-0.770934898,0.4413327,neg,ns,0.277470274,Pde1b,Pde1b_Exon,15,103503523,103503572,103503523,103503524,50,-,CGTCACCCCTGGAGCTGAAGTCAGCCCCCAGCAAGAAGATGTGGATTAAG,Promoter (<=1kb),15,103503034,103530051,27018,1,Pde1b-202,489,Nckap1l-203;Nckap1l-201;Nckap1l-205;Pde1b-202;Pde1b-201;Pde1b-203,Nckap1l;Nckap1l;Nckap1l;Pde1b;Pde1b;Pde1b,0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,18574,ENSMUSG00000022489,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
16372,cg22671777,0.0000458,0.0000132,3.476482224,0.00058058,gain,ns,-0.0000469,0.0000224,-2.094689843,0.037010029,neg,ns,0.000390583,0.006560834,0.059532535,0.952566311,pos,ns,0.021104782,0.000212919,0.000225627,0.943680815,0.346067658,pos,ns,0.710698318,Nfix,Nfix_Intron,8,84780055,84780104,84780055,84780056,50,+,CGATTCAGCACACACAAGAGAAAACTGTGGGCGACAGACCCAACGTCCTA,"Intron (Nfix-201/Nfix, intron 1 of 8)",8,84708614,84800140,91527,2,Nfix-201,20036,Nfix-201;Nfix-202;Nfix-205,Nfix;Nfix;Nfix,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,49,18032,ENSMUSG00000001911,conserved gene and region,8,84779926,84780165,240,*,240,13,0.554166667,0.771895101,0.054166667,0.000000544,CpGisland,TRUE,U13,Hc-P
651,cg06978406,-0.0000222,0.0000133,-1.6697647,0.095975333,loss,ns,-0.0000472,0.0000226,-2.094579967,0.037019878,neg,ns,-0.017119859,0.006608765,-2.59047787,0.01003713,neg,ns,1.99839043,-0.000107649,0.000227275,-0.473650108,0.636082826,neg,ns,0.81561484,Rbfox1,Rbfox1_Intergenic_downstream,16,7520757,7520806,7520805,7520806,50,+,CCAGCATGTAAAACAAATAACTAGGCTGACATGTCTGAAGTGCCGTGTCG,Distal Intergenic,16,7352970,7409969,57000,1,Rbfox1-206,167787,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,35,268859,ENSMUSG00000008658,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U14,Hc-H
18052,cg12317253,0.0000467,0.00000976,4.78910211,0.0000026,gain,ns,-0.0000347,0.0000166,-2.094464752,0.037030208,neg,ns,0.003591066,0.004856758,0.739395806,0.460226201,pos,ns,0.33702866,-0.0000929,0.000167023,-0.556370335,0.578359096,neg,ns,0.695131429,Pola1,Pola1_Intron,X,93410012,93410061,93410060,93410061,50,+,AGCAAGCAGTTTAAGCTGCCAACTCAAAAGGGACACATTAGAGGGTATCG,"Intron (Pola1-201/Pola1, intron 35 of 36)",20,93304767,93632155,327389,2,Pola1-201,222094,Pola1-201,Pola1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,59,62,18968,ENSMUSG00000006678,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9197,cg02705280,-0.00000821,0.00000614,-1.337116781,0.182164842,loss,ns,-0.0000219,0.0000104,-2.094320634,0.037043132,neg,ns,-0.009316166,0.003056596,-3.047888846,0.002502941,neg,ns,2.601549355,0.0000939,0.000105116,0.8936287,0.372213809,pos,ns,0.892312556,Cadm1,Cadm1_Intergenic_upstream,9,47506264,47506313,47506264,47506265,50,-,CGCATTGATCTTCTTGGCTCTGAAAATACAGTGTAATGAACCCCCGCTAA,Distal Intergenic,9,47530173,47853385,323213,1,Cadm1-204,-23909,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,18,77,54725,ENSMUSG00000032076,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23764,cg04422341,0.0000483,0.00000391,12.37666654,7.29E-29,gain,yes,-0.0000139,0.00000663,-2.094101539,0.037062788,neg,ns,-0.000806332,0.001943648,-0.414855201,0.678534857,neg,ns,0.168427837,0.0000552,0.0000668,0.826548947,0.409128482,pos,ns,0.069263451,Foxo6,Foxo6_Exon,4,120286851,120286900,120286851,120286852,50,-,CGAGCTGTTGCTGTCGCCTTTATCCTTGAAGTAGGGCACGTAACGGACCA,Promoter (<=1kb),4,120267079,120287349,20271,2,Foxo6-201,449,Foxo6-201,Foxo6,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,42,329934,ENSMUSG00000052135,conserved gene and region,4,120286820,120288190,1371,*,1371,160,0.728665208,0.879452187,0.116703136,1.00E-132,CpGisland,TRUE,U3,Pr-B
19542,cg21791714,0.0000208,0.00000548,3.798327308,0.00017529,gain,ns,-0.0000195,0.0000093,-2.093627607,0.037105338,neg,ns,-0.001692991,0.002725253,-0.621223443,0.534909135,neg,ns,0.271719985,0.0000302,0.0000937,0.322430553,0.747343882,pos,ns,0.902318334,Eif4e3,Eif4e3_threeUTR,6,99626957,99627006,99626957,99626958,50,+,CGTTTCCAAAACCAATCAGCAAAGGACAAAGAATTCTTTACAGAGTGCAA,3' UTR,6,99625135,99666771,41637,2,Eif4e3-201,39765,Eif4e3-201;Gm20696-201;Gm20696-203,Eif4e3;Gm20696;Gm20696,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,1,66892,ENSMUSG00000093661,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18755,cg23734134,0.00000616,0.0000075,0.82165069,0.411907195,gain,ns,-0.0000267,0.0000127,-2.093398,0.037125967,neg,ns,-0.00823884,0.003734347,-2.206233184,0.028100784,neg,ns,1.551281563,0.000154534,0.000128424,1.203308784,0.229774977,pos,ns,0.859427397,Gm5560,Gm5560_Intergenic_upstream,5,97195350,97195399,97195398,97195399,50,-,ATCAGGCCTATTAAGTGACAAAGGTTTACTCTGTAACAGCTGTGCTGGCG,Distal Intergenic,5,97264828,97265719,892,1,Gm5560-201,-69478,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,9,433923,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3071,cg01865800,-0.00000486,0.00000394,-1.233970481,0.218148584,loss,ns,0.000014,0.00000669,2.093274041,0.037137108,pos,ns,0.005042699,0.001961125,2.571329105,0.01059694,pos,ns,1.974819541,-0.000142511,0.0000674,-2.113058321,0.035394754,neg,ns,0.933543634,Lrmda,Lrmda_Intron,14,22539478,22539527,22539478,22539479,50,+,CGTTGACAATACTGACAATATAATTGACCTAAAAAGTTCTGGATTTCCTG,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,519766,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206;Lrmda-202,Lrmda;Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11514,cg09440862,0.0000704,0.00000848,8.303456943,3.17E-15,gain,yes,-0.0000302,0.0000144,-2.093251292,0.037139153,neg,ns,0.004535495,0.004221405,1.074403978,0.283477211,pos,ns,0.547481849,-0.000460063,0.000145174,-3.169052079,0.001682003,neg,ns,0.068277957,Ntrk2,Ntrk2_fiveUTR,13,58807773,58807822,58807821,58807822,50,+,TCAGACTAATTTTCTGGAGTTTCTGCCCCTGCTCTGCGTCAGCCCTCACG,5' UTR,13,58806569,59129965,323397,1,Ntrk2-207,1204,Ntrk2-207;Ntrk2-206;Ntrk2-204;Ntrk2-201;Ntrk2-205;Ntrk2-202;Ntrk2-208;Ntrk2-209,Ntrk2;Ntrk2;Ntrk2;Ntrk2;Ntrk2;Ntrk2;Ntrk2;Ntrk2,0;1183;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,4,18212,ENSMUSG00000055254,conserved gene and region,13,58807809,58808109,301,*,301,29,0.717607973,0.7525,0.096345515,6.93E-22,CpGisland,TRUE,U3,Pr-B
24099,cg08915111,-0.0000278,0.0000187,-1.491257119,0.136910853,loss,ns,0.0000663,0.0000317,2.093031324,0.037158931,pos,ns,-0.000451735,0.009284375,-0.048655419,0.961225236,neg,ns,0.017174836,-0.00021818,0.000319289,-0.683329619,0.494908976,neg,ns,0.28598552,Zic2,Zic2_Intergenic_downstream,14,122486570,122486619,122486618,122486619,50,+,GTTTACAGCTTGAATTATTAGACTGAACACCTCTGGCTGACACCACGACG,Distal Intergenic,14,122478100,122479050,951,1,Zic2-202,8470,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,7,22772,ENSMUSG00000061524,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
4629,cg26903477,-0.00000292,0.000000964,-3.02536359,0.002691234,loss,ns,0.00000343,0.00000164,2.092861701,0.037174189,pos,ns,0.000586987,0.000479762,1.223497188,0.222071137,pos,ns,0.653507883,-0.0000556,0.0000165,-3.371284606,0.000842933,neg,ns,0.032398043,E2f3,E2f3_fiveUTR,13,29985992,29986041,29986040,29986041,50,-,GGCTCCAGGAAGCTGCTGCTGACAATGAATGAAGGGATACGGTTTACGCG,Promoter (<=1kb),13,29906575,29986063,79489,2,E2f3-201,22,E2f3-203;E2f3-204;E2f3-201;E2f3-202,E2f3;E2f3;E2f3;E2f3,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,10,13557,ENSMUSG00000016477,conserved gene but different region,13,29986031,29986187,157,*,157,14,0.573248408,1.168527379,0.089171975,2.69E-10,CpGisland,TRUE,U2,Pr-W
9609,cg11946963,-0.0000194,0.00000607,-3.201728979,0.001507837,loss,ns,0.0000216,0.0000103,2.092829212,0.037177112,pos,ns,0.000926322,0.003020854,0.306642455,0.759321395,pos,ns,0.119574363,-0.000144649,0.000103887,-1.392374461,0.164806975,neg,ns,0.862190974,Ncam1,Ncam1_Exon,9,49507523,49507572,49507571,49507572,50,-,GGGTGGTGGTCTCACTGGTGGGGCTGTTCTGAGCAGTGGCAAAGGTTTCG,"Exon (Ncam1-205/Ncam1, exon 19 of 20)",9,49502136,49798925,296790,2,Ncam1-204,291353,Ncam1-204;Ncam1-205;Ncam1-202,Ncam1;Ncam1;Ncam1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,16,17967,ENSMUSG00000039542,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10157,cg20730877,0.000252713,0.0000234,10.81547352,2.41E-23,gain,yes,-0.0000831,0.0000397,-2.092821838,0.037177775,neg,ns,0.032351801,0.011629425,2.781891788,0.005735414,pos,ns,2.241435243,-0.001327994,0.000399935,-3.320524635,0.001005766,neg,ns,0.330372766,Gm28308,Gm28308_fiveUTR,6,52204390,52204439,52204390,52204391,50,+,CGTTTGTGCGTCTATAGCACCCTTGCACAATTTATGATGAATTATGGAAA,5' UTR,6,52163359,52213339,49981,2,Gm28308-201,8900,Gm28308-201;Hoxa3-201;Hoxa3-203;Hoxa5-201;Hoxa6-201,Gm28308;Hoxa3;Hoxa3;Hoxa5;Hoxa6,0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,21,103,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
8315,cg04398985,0.0000329,0.0000126,2.622129328,0.009169639,gain,ns,-0.0000446,0.0000213,-2.092793128,0.037180359,neg,ns,0.025328931,0.006249851,4.052725559,0.0000641,pos,ns,4.193390622,-0.000881254,0.000214932,-4.100153826,0.0000528,neg,ns,0.529338805,Zeb2,Zeb2_Exon,2,45001709,45001758,45001709,45001710,50,+,CGGTACTTGATGTGCTCCTTCAGTGATGTCAAGCGCTTGTAGCCCCGGTC,"Exon (Zeb2-212/Zeb2, exon 7 of 11)",2,44983632,45117395,133764,2,Zeb2-212,115637,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-227;Zeb2-216;Zeb2-229;Zeb2-218;Zeb2-222,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,21,158,24136,ENSMUSG00000026872,conserved gene but different region,2,45001704,45001759,56,*,56,7,0.607142857,1.375438597,0.125,0.00000289,CpGisland,TRUE,U12,Tr-I
18996,cg24590724,-0.0000136,0.0000026,-5.24889009,0.000000285,loss,yes,0.00000923,0.00000441,2.09271949,0.037186985,pos,ns,0.002436212,0.001291909,1.88574596,0.060264016,pos,ns,1.219941932,-0.000134317,0.0000444,-3.023208818,0.002709911,neg,ns,0.9456079,Dach1,Dach1_Intron,14,98156077,98156126,98156125,98156126,50,-,TCTGGAAAAAACAGACAAGTATGCACTCTTTTTAACTGCAGCTTAGGGCG,"Intron (Dach1-201/Dach1, intron 1 of 10)",14,97786853,98169543,382691,2,Dach1-201,13417,Dach1-201;Dach1-202;Dach1-203,Dach1;Dach1;Dach1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,76,13134,ENSMUSG00000055639,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7135,cg18262799,-0.00000739,0.00000433,-1.706160806,0.08897968,loss,ns,0.0000154,0.00000736,2.092651029,0.037193146,pos,ns,0.005073367,0.00215606,2.353073086,0.019243467,pos,ns,1.715716688,-0.000170131,0.0000741,-2.294513521,0.022429144,neg,ns,0.922274701,Gm5973,Gm5973_Intergenic_upstream,1,41286750,41286799,41286798,41286799,50,-,ATTTTTACAGTCTCATAATATTCTGAGAAGCTCACCATAAACTATTAACG,Distal Intergenic,1,40863737,40864232,496,2,Gm5973-201,-422567,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,18,18,546733,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14007,cg09055735,0.0000351,0.0000102,3.443830243,0.000652455,gain,ns,-0.0000362,0.0000173,-2.092436463,0.037212463,neg,ns,-0.005248528,0.005075418,-1.034107495,0.301891947,neg,ns,0.520148472,0.000280866,0.000174543,1.609148523,0.108601715,pos,ns,0.774955872,Frmd3,Frmd3_Exon,4,74187751,74187800,74187799,74187800,50,+,CTCCTCCTTTTGGAGTCAGGTATTGATCTCTCCTTCTTATGCGAAATCCG,"Exon (Frmd3-202/Frmd3, exon 14 of 15)",4,74013442,74202214,188773,1,Frmd3-202,174309,Frmd3-202;Frmd3-201;Frmd3-203,Frmd3;Frmd3;Frmd3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,242506,ENSMUSG00000049122,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20256,cg22838106,0.00000618,0.00000567,1.089942975,0.276584772,gain,ns,0.0000202,0.00000964,2.092093575,0.037243349,pos,ns,0.002002413,0.002823145,0.709284504,0.478681045,pos,ns,0.31995377,0.0000968,0.0000971,0.997133363,0.319477464,pos,ns,0.071389919,Hoxc5,Hoxc5_Intron,15,102972068,102972117,102972068,102972069,50,+,CGTTGATTTAAATATTATCCAGGTGACCACAATAAGTCAAGGTCATAAAA,"Intron (Hoxc5-202/Hoxc5, intron 1 of 1)",15,102967443,103015676,48234,1,Hoxc5-202,4625,Hoxc10-201;Hoxc5-202;Hoxc9-202;Hoxc9-201,Hoxc10;Hoxc5;Hoxc9;Hoxc9,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,46,134,15424,ENSMUSG00000022485,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
8000,cg02019656,-0.00000433,0.00000529,-0.818381884,0.413767787,loss,ns,0.0000188,0.00000899,2.092018459,0.037250119,pos,ns,0.007764869,0.002633944,2.948000079,0.003441332,pos,ns,2.463273464,-0.000274658,0.0000906,-3.032179854,0.002632926,neg,ns,0.904970281,Ldb2,Ldb2_Intron,5,44676433,44676482,44676433,44676434,50,-,CGTGGGATTTTTGCCAGAGTAATTATTTTTCAATTCAACAATAATGAGAA,"Intron (Ldb2-207/Ldb2, intron 1 of 8)",5,44472132,44799619,327488,2,Ldb2-207,123137,Ldb2-207;Ldb2-201;Ldb2-204;Ldb2-205;Ldb2-203,Ldb2;Ldb2;Ldb2;Ldb2;Ldb2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,9,16826,ENSMUSG00000039706,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7146,cg00637411,0.000057,0.0000138,4.126967262,0.0000473,gain,ns,-0.0000491,0.0000235,-2.091986139,0.037253031,neg,ns,0.054698961,0.006878901,7.951700947,3.46E-14,pos,yes,13.46036024,-0.000806373,0.000236565,-3.408678225,0.000739079,neg,ns,0.746576882,Nudt2,Nudt2_Intron,4,41470686,41470735,41470734,41470735,50,+,CTTTTTTGAAGTGTGAATTGCCTGCTGTCAGCCTGGAGTTCTCACCTCCG,"Intron (Nudt2-201/Nudt2, intron 1 of 2)",4,41465151,41480926,15776,1,Nudt2-201,5535,Nudt2-201,Nudt2,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,66401,ENSMUSG00000028443,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17662,cg14119482,0.000047,0.00000459,10.23947703,2.18E-21,gain,yes,-0.0000163,0.00000781,-2.091490334,0.037297741,neg,ns,0.006130172,0.002286912,2.680545394,0.007743354,pos,ns,2.111070911,-0.000167861,0.0000786,-2.134364719,0.033597204,neg,ns,0.069160301,Zic4,Zic4_fiveUTR,9,91368962,91369011,91368962,91368963,50,-,CGCTCTCTGCAGGAAACGCGAACGGCTCCAGTTCAAAGCCACATGCACCA,Promoter (<=1kb),9,91368970,91387793,18824,1,Zic4-204,0,Zic1-201;Zic1-202;Zic4-208;Zic4-206;Zic4-207;Zic4-211;Zic4-204;Zic4-203;Zic4-210;Zic4-209;Zic4-212,Zic1;Zic1;Zic4;Zic4;Zic4;Zic4;Zic4;Zic4;Zic4;Zic4;Zic4,0;0;0;0;0;0;0;0;-1993;0;-2339,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,55,22774,ENSMUSG00000036972,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
1792,cg21573997,-0.00000292,0.00000398,-0.732928069,0.464156139,loss,ns,0.0000141,0.00000676,2.091386938,0.037307071,pos,ns,0.006015611,0.001980565,3.037321206,0.002589717,pos,ns,2.586747771,-0.000229799,0.0000681,-3.373864048,0.000835354,neg,ns,0.873916692,Foxp2,Foxp2_Intron,6,15256450,15256499,15256450,15256451,50,+,CGGTTCACTAGCCTTAGGAGCTGCTATTTGCCTTGAATAAATTACATGAA,"Intron (Foxp2-207/Foxp2, intron 4 of 18)",6,14901349,15441977,540629,1,Foxp2-207,355101,Foxp2-207;Foxp2-213;Foxp2-208;Foxp2-211;Foxp2-205;Foxp2-204;Foxp2-201;Foxp2-210;Foxp2-214;Foxp2-212;Foxp2-209;Foxp2-202;Foxp2-218,Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,38,65,114142,ENSMUSG00000029563,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8118,cg17946572,0.000104894,0.0000154,6.789521273,5.74E-11,gain,yes,0.0000549,0.0000262,2.09133076,0.03731214,pos,ns,0.003962856,0.007689359,0.515368843,0.606662616,pos,ns,0.217052767,0.000379179,0.000264436,1.433912892,0.152605006,pos,ns,0.551541671,Pax2,Pax2_Promoter,19,44753649,44753698,44753697,44753698,50,+,AGAGCAACTCCCCAAAAGTTTATTTGCCTTTAAATTTCCGCAGGGAGGCG,Promoter (2-3kb),19,44756045,44837851,81807,1,Pax2-203,-2347,Pax2-203;Pax2-201,Pax2;Pax2,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,5,166,18504,ENSMUSG00000004231,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
11632,cg11673702,-0.00000213,0.00000239,-0.893060184,0.372517686,loss,ns,0.00000849,0.00000406,2.091145495,0.037328864,pos,ns,0.002634069,0.001189751,2.213967637,0.027558492,pos,ns,1.559744547,-0.0000864,0.0000409,-2.112020624,0.035484368,neg,ns,0.946402499,Ptbp3,Ptbp3_Exon,4,59517612,59517661,59517660,59517661,50,+,GATTAGTTACTTTGCCAAATGGTAGACCTAATGATATGATCTCTGCTTCG,"Exon (Ptbp3-201/Ptbp3, exon 3 of 14)",4,59471868,59549364,77497,2,Ptbp3-201,31703,Ptbp3-201;Ptbp3-212;Ptbp3-202;Ptbp3-210;Ptbp3-208;Ptbp3-205;Ptbp3-213;Ptbp3-203;Ptbp3-211;Ptbp3-206;Ptbp3-204,Ptbp3;Ptbp3;Ptbp3;Ptbp3;Ptbp3;Ptbp3;Ptbp3;Ptbp3;Ptbp3;Ptbp3;Ptbp3,0;0;0;0;0;0;0;0;0;-3264;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,5,230257,ENSMUSG00000028382,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16974,cg08882278,-0.00000223,0.00000611,-0.365382425,0.715075133,loss,ns,0.0000217,0.0000104,2.091123424,0.037330857,pos,ns,-0.000617957,0.003039734,-0.203293061,0.839039354,neg,ns,0.076217669,-0.000091,0.000104536,-0.87007363,0.384933377,neg,ns,0.712087651,Zfp423,Zfp423_Intron,8,87742141,87742190,87742189,87742190,50,-,TGCATGCCAGCACACCAATAAATTAAGATATTCCTGGCCGCATCTGCACG,"Intron (Zfp423-203/Zfp423, intron 3 of 5)",8,87661810,87804439,142630,2,Zfp423-203,62249,Zfp423-203;Zfp423-202;Zfp423-201,Zfp423;Zfp423;Zfp423,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,42,53,94187,ENSMUSG00000045333,conserved gene and region,8,87742179,87742302,124,*,124,11,0.64516129,0.853033146,0.088709677,3.88E-08,CpGisland,TRUE,U15,NS
1724,cg07633380,-0.00000352,0.00000676,-0.521131431,0.602647278,loss,ns,0.000024,0.0000115,2.090734265,0.037366008,pos,ns,0.001688637,0.003365999,0.501674977,0.616252263,pos,ns,0.210241473,-0.0000107,0.000115756,-0.09270271,0.926199624,neg,ns,0.615180524,Taf4b,Taf4b_Exon,18,14844417,14844466,14844417,14844418,50,-,CGTTCTAATAAAGAAGATCCAGAACAGCTGAGATTAAAGCAGAAAGCCAA,"Exon (Taf4b-201/Taf4b, exon 13 of 15)",18,14783245,14900359,117115,1,Taf4b-201,61172,Taf4b-201;Taf4b-202,Taf4b;Taf4b,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,3,72504,ENSMUSG00000054321,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9827,cg15931265,0.0000257,0.00000726,3.533416564,0.00047267,gain,ns,0.0000258,0.0000123,2.090298361,0.037405416,pos,ns,0.002472845,0.003615214,0.68401083,0.494479315,pos,ns,0.305851871,0.000143442,0.000124327,1.153752203,0.249490506,pos,ns,0.679183127,Gm48777,Gm48777_Intron,12,51002492,51002541,51002540,51002541,50,+,GATAGGATGCTAGGGTTTTGCTAACAAGCTCATCCGTTGGGACTCAGCCG,"Intron (Gm40421-201/Gm40421-201, intron 2 of 5)",12,50895099,50895471,373,2,Gm48777-201,-107021,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,10,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23289,cg19210175,0.0000023,0.00000324,0.711428188,0.477353917,gain,ns,-0.0000115,0.0000055,-2.09015942,0.037417984,neg,ns,-0.003858947,0.001612011,-2.393872048,0.0172657,neg,ns,1.762815818,0.000165862,0.0000554,2.991904776,0.002995018,pos,ns,0.843741507,Eri3,Eri3_Intron,4,117649852,117649901,117649852,117649853,50,-,CGATCAATGGGAGTTAAGGAGATGAATTATTTAAACCTCACCAGCTTTTA,"Intron (Eri3-201/Eri3, intron 8 of 8)",4,117550365,117674297,123933,1,Eri3-201,99487,Eri3-201;Eri3-206;Eri3-203,Eri3;Eri3;Eri3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,82,97,140546,ENSMUSG00000033423,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9838,cg18174290,-0.00000474,0.00000187,-2.532576613,0.011815947,loss,ns,-0.00000664,0.00000318,-2.090111834,0.037422289,neg,ns,0.000863125,0.000930601,0.927491979,0.354392705,pos,ns,0.450515227,0.00000403,0.000032,0.125914611,0.899881138,pos,ns,0.9544569,Tbc1d5,Tbc1d5_Intron,17,51048924,51048973,51048972,51048973,50,-,TATCATGCATTCAGATTTTAAAGCAATTAAAGATGCTCTTAGTGTAATCG,"Intron (Tbc1d5-201/Tbc1d5, intron 2 of 21)",17,50733124,51179168,446045,2,Tbc1d5-201,130195,Tbc1d5-201;Tbc1d5-207;Tbc1d5-205;Tbc1d5-208;Tbc1d5-203;Tbc1d5-202;Tbc1d5-206;Tbc1d5-209,Tbc1d5;Tbc1d5;Tbc1d5;Tbc1d5;Tbc1d5;Tbc1d5;Tbc1d5;Tbc1d5,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,14,72238,ENSMUSG00000023923,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7399,cg11234786,0.00000068,0.00000192,0.353473758,0.723973559,gain,ns,0.00000683,0.00000327,2.089700632,0.037459511,pos,ns,0.002065429,0.000957641,2.15678852,0.031790684,pos,ns,1.497700128,-0.0000423,0.0000329,-1.283209067,0.200377307,neg,ns,0.943398538,Pou3f3,Pou3f3_Intergenic_upstream,1,42540521,42540570,42540521,42540522,50,+,CGCACTGTAAACAACTGTTTGCAATGAGAGTTTTACACTGTCTTTAAATA,Distal Intergenic,1,42694925,42703176,8252,1,Pou3f3-202,-154355,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,37,18993,ENSMUSG00000045515,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23486,cg07121397,0.00000437,0.00000328,1.332429519,0.183697689,gain,ns,0.0000117,0.00000558,2.089683082,0.0374611,pos,ns,-0.0000373,0.001634088,-0.022836019,0.981795768,neg,ns,0.007978844,-0.00000434,0.0000562,-0.077274733,0.938454841,neg,ns,0.927197336,Dpyd,Dpyd_Intron,3,118626479,118626528,118626527,118626528,50,+,TTTTGCTGTTTTCCCGAATGGGCATACAATGGCAGCTGTCTTTCTAATCG,"Intron (Dpyd-201/Dpyd, intron 2 of 22)",3,118562129,119432924,870796,1,Dpyd-201,64350,Dpyd-201;Dpyd-202;Dpyd-205;Dpyd-204,Dpyd;Dpyd;Dpyd;Dpyd,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,14,29,99586,ENSMUSG00000033308,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18384,cg11230220,-0.00000214,0.00000159,-1.34584832,0.179334872,loss,ns,0.00000565,0.00000271,2.089563554,0.037471926,pos,ns,0.001990569,0.000792851,2.51064578,0.012559848,pos,ns,1.901015624,0.00000205,0.0000273,0.07505238,0.940221445,pos,ns,0.0458698,Jun,Jun_fiveUTR,4,95051226,95051275,95051226,95051227,50,-,CGTTGAGGGCATCGTCATAGAAGGTCGTTTCCATCTTTGCAGTCATAGAA,Promoter (<=1kb),4,95049034,95052222,3189,2,Jun-201,947,Jun-201,Jun,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,2,16476,ENSMUSG00000052684,conserved gene but different region,4,95051193,95051760,568,*,568,61,0.654929578,1.001532013,0.107394366,1.52E-48,CpGisland,TRUE,U1,Pr-A
18341,cg10450039,0.000000403,0.00000176,0.229545562,0.818596291,gain,ns,0.00000624,0.00000298,2.089426281,0.037484362,pos,ns,0.000758821,0.00087433,0.8678882,0.386126882,pos,ns,0.413269962,-0.0000176,0.0000301,-0.585319431,0.558758773,neg,ns,0.956912316,Pogz,Pogz_Exon,3,94862443,94862492,94862443,94862444,50,+,CGGCCTGTACAAAATGCAATGAATCAGGTTGGGATTGTGCTGAACGTACA,"Exon (Pogz-205/Pogz, exon 5 of 19)",3,94837567,94882326,44760,1,Pogz-205,24876,Pogz-205;Pogz-202;Pogz-207;Pogz-203;Pogz-201;Pogz-204;Pogz-208;Pogz-209,Pogz;Pogz;Pogz;Pogz;Pogz;Pogz;Pogz;Pogz,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,7,229584,ENSMUSG00000038902,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13768,cg21122529,-0.00000663,0.00000163,-4.068260086,0.0000601,loss,ns,0.00000578,0.00000277,2.089345319,0.037491698,pos,ns,-0.000189105,0.000810654,-0.233275019,0.815701812,neg,ns,0.088468573,0.0000312,0.0000279,1.118256976,0.26432307,pos,ns,0.047933021,Cherp,Cherp_Exon,8,72474611,72474660,72474611,72474612,50,+,CGCTGCTGCTGCTCCAGCGCCAGCTTGCACTTGTAGTAACTGTAGAATTC,Promoter (<=1kb),8,72460489,72475119,14631,2,Cherp-201,459,Cherp-201;Cherp-207;Cherp-202;Cherp-203;Cherp-206;Cherp-205,Cherp;Cherp;Cherp;Cherp;Cherp;Cherp,0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,27967,ENSMUSG00000052488,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5368,cg08124155,0.00000158,0.00000133,1.188901639,0.235388283,gain,ns,0.00000472,0.00000226,2.089155962,0.037508862,pos,ns,0.002602629,0.000661935,3.931848354,0.000104031,pos,ns,3.982835774,-0.0000495,0.0000228,-2.174411591,0.030430256,neg,ns,0.032352866,Lmx1b,Lmx1b_Intron,2,33630990,33631039,33630990,33630991,50,+,CGGGGTTTAGGGTTTTTGTAATCCCCCTAAACTGTCTTTGTTCGAAATCT,"Intron (Lmx1b-201/Lmx1b, intron 2 of 7)",2,33560965,33640608,79644,2,Lmx1b-201,9569,Lmx1b-201;Lmx1b-203;Lmx1b-204;Lmx1b-202,Lmx1b;Lmx1b;Lmx1b;Lmx1b,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,26,16917,ENSMUSG00000038765,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
22631,cg19390002,0.00000122,0.0000039,0.311687771,0.75548734,gain,ns,0.0000138,0.00000663,2.088983753,0.037524477,pos,ns,0.005733495,0.001941985,2.95238922,0.003394122,pos,ns,2.469272552,-0.000129447,0.0000668,-1.938274678,0.053497378,neg,ns,0.927508937,Sox6,Sox6_threeUTR,7,115476530,115476579,115476530,115476531,50,-,CGGCACAGCATACCTGAGTGAGAATGTTTAACCCCATCTAAAACAGTAAC,3' UTR,7,115470872,116031047,560176,2,Sox6-210,554468,Sox6-210;Sox6-201;Sox6-202;Sox6-204;Sox6-205;Sox6-203;Sox6-212;Sox6-206,Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,57,20679,ENSMUSG00000051910,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5874,cg21696089,-0.0000338,0.0000107,-3.148189879,0.001802734,loss,ns,0.0000381,0.0000182,2.088832584,0.037538189,pos,ns,-0.000701063,0.005342098,-0.131233653,0.895675601,neg,ns,0.047849256,0.0000873,0.000183714,0.475306405,0.634903316,pos,ns,0.150060349,Cebpa,Cebpa_Exon,7,35119643,35119692,35119643,35119644,50,-,CGAGTTCCTGGCCGACCTGTTCCAGCACAGCCGGCAGCAGGAGAAGGCCA,Promoter (<=1kb),7,35119293,35121928,2636,1,Cebpa-202,350,Cebpa-202;Cebpa-201,Cebpa;Cebpa,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,12606,ENSMUSG00000034957,conserved gene and region,7,35119006,35120046,1041,*,1041,130,0.724303554,0.956713537,0.124879923,2.34E-112,CpGisland,TRUE,U1,Pr-A
18162,cg16938744,-0.00000191,0.00000119,-1.601469058,0.110291557,loss,ns,-0.00000423,0.00000203,-2.088801972,0.037540966,neg,ns,-0.001521972,0.000593321,-2.56517289,0.010782753,neg,ns,1.967270363,0.0000287,0.0000204,1.407181616,0.160375356,pos,ns,0.036554168,Ttc17,Ttc17_Intergenic_downstream,2,94265400,94265449,94265400,94265401,50,-,CGTCAGTGCGTCATTAGGTCTCCCTTAGAAACACTGACTTTCAAAAATAG,Distal Intergenic,2,94355049,94362817,7769,2,Ttc17-205,97417,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,5,74569,ENSMUSG00000027194,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8769,cg12428891,0.00000947,0.0000051,1.85512055,0.064528215,gain,ns,-0.0000181,0.00000867,-2.08879813,0.037541314,neg,ns,-0.004769061,0.002540447,-1.877252209,0.061422455,neg,ns,1.211672828,0.000217223,0.0000874,2.486360274,0.013431984,pos,ns,0.879621314,Lcorl,Lcorl_Exon,5,45734279,45734328,45734279,45734280,50,-,CGAGTTTTGTTTTTAAAAGATGCAGGCTTCCCTGCTGGTAAGGCTTCTAA,"Exon (Lcorl-204/Lcorl, exon 7 of 7)",5,45697181,45857615,160435,2,Lcorl-202,123287,Lcorl-202;Lcorl-212;Lcorl-210;Lcorl-205;Lcorl-204;Lcorl-201,Lcorl;Lcorl;Lcorl;Lcorl;Lcorl;Lcorl,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,9,209707,ENSMUSG00000015882,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7318,cg04724018,-0.00000265,0.00000291,-0.911429257,0.362777429,loss,ns,0.0000103,0.00000494,2.088664595,0.037553431,pos,ns,0.002649038,0.001447579,1.829978676,0.068213275,pos,ns,1.1661311,-0.0000786,0.0000498,-1.579184152,0.115313625,neg,ns,0.940328886,Stag2,Stag2_threeUTR,X,42276562,42276611,42276562,42276563,50,+,CGAGGCTTAGGCAGCTAGACATCGTTTAAAACAAAATATTAACTTATATT,3' UTR,20,42149317,42277185,127869,1,Stag2-203,127245,Stag2-203;Stag2-202;Stag2-201,Stag2;Stag2;Stag2,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,7,20843,ENSMUSG00000025862,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20299,cg16357953,0.0000597,0.00000524,11.38678853,2.49E-25,gain,yes,-0.0000186,0.0000089,-2.088420559,0.037575583,neg,ns,0.007179764,0.002607716,2.753277303,0.006248206,pos,ns,2.204244645,-0.000118486,0.0000897,-1.321219974,0.187402375,neg,ns,0.136769482,Hoxc5,Hoxc5_Exon,15,102991100,102991149,102991148,102991149,50,+,CGTGGTGCAATATCCCGACTGTAAATCCTCCGCCAACACTAACAGTAGCG,"Exon (Hoxc8-201/Hoxc8, exon 1 of 2)",15,102967443,103015676,48234,1,Hoxc5-202,23657,Hoxc5-202;Hoxc8-201;Hoxc8-202,Hoxc5;Hoxc8;Hoxc8,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,72,134,15424,ENSMUSG00000022485,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
259,cg10562683,0.00000272,0.00000459,0.593719625,0.553132622,gain,ns,0.0000163,0.00000779,2.088342786,0.037582645,pos,ns,0.008467651,0.002282757,3.709396169,0.000246134,pos,ns,3.60882766,-0.000321544,0.0000785,-4.095900505,0.0000537,neg,ns,0.892220036,Cdk14,Cdk14_Intron,5,4892000,4892049,4892048,4892049,50,-,CCCCTTCAAAAGGTTTCACTGCTCCTGATGTTTAACGTTATGCAAAGACG,"Intron (Cdk14-203/Cdk14, intron 12 of 13)",5,4803391,5266068,462678,2,Cdk14-203,374019,Cdk14-203;Cdk14-201;Cdk14-202;Cdk14-204;Cdk14-214,Cdk14;Cdk14;Cdk14;Cdk14;Cdk14,0;0;0;0;-3088,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,16,18647,ENSMUSG00000028926,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23628,cg25291190,0.0000106,0.00000325,3.251068429,0.001276257,gain,ns,-0.0000115,0.00000552,-2.088339712,0.037582924,neg,ns,0.007987084,0.001617698,4.937314855,0.0000013,pos,ns,5.887249446,-0.000371605,0.0000556,-6.679638401,1.11E-10,neg,yes,0.936653166,Adipor2,Adipor2_threeUTR,6,119358936,119358985,119358936,119358937,50,-,CGATACTGAGGGGTGGCAAACATGTCCCACTGGGAGACTATAATGGCTGC,3' UTR,6,119353150,119417704,64555,2,Adipor2-201,58719,Adipor2-201;Adipor2-202;Adipor2-203;Adipor2-204,Adipor2;Adipor2;Adipor2;Adipor2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,2,68465,ENSMUSG00000030168,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2548,cg07120300,-0.0000013,0.00000525,-0.246762679,0.805255224,loss,ns,0.0000186,0.00000893,2.088075187,0.037606953,pos,ns,0.007200871,0.002615371,2.753288654,0.006247995,pos,ns,2.204259339,-0.000236976,0.0000899,-2.634758646,0.008842703,neg,ns,0.909332302,Ppp3cb,Ppp3cb_threeUTR,14,20500038,20500087,20500038,20500039,50,+,CGGCCCATGCATGGAATTTATTGTGTGCTACTGTTTATAAAATACTCGAA,3' UTR,14,20499364,20546573,47210,2,Ppp3cb-202,46486,Mss51-201;Ppp3cb-202;Ppp3cb-205;Ppp3cb-201;Ppp3cb-208,Mss51;Ppp3cb;Ppp3cb;Ppp3cb;Ppp3cb,-3137;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,10,19056,ENSMUSG00000021816,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12856,cg05388504,-0.0000043,0.0000046,-0.934924518,0.350554888,loss,ns,-0.0000163,0.00000781,-2.087789776,0.037632893,neg,ns,-0.005395589,0.002287043,-2.359199182,0.01893435,neg,ns,1.722749601,0.0000481,0.0000787,0.61180254,0.541116835,pos,ns,0.910177273,Ebf2,Ebf2_Intron,14,67347683,67347732,67347731,67347732,50,-,TGTTCCACCTTCTCCTGTAATTACGGGGGACTCAGTTCAGATCAGCTGCG,"Intron (Ebf2-201/Ebf2, intron 7 of 16)",14,67233292,67429777,196486,1,Ebf2-201,114391,Ebf2-201;Ebf2-203;Ebf2-202,Ebf2;Ebf2;Ebf2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,21,13592,ENSMUSG00000022053,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9724,cg06627238,-0.0000545,0.0000106,-5.124865143,0.000000525,loss,yes,0.0000377,0.0000181,2.087746888,0.037636793,pos,ns,-0.01234603,0.005293557,-2.332275012,0.020326227,neg,ns,1.691943236,0.00030955,0.000182045,1.700405812,0.090057537,pos,ns,0.805493326,Prkd1,Prkd1_Intergenic_downstream,12,50295738,50295787,50295786,50295787,50,+,TTCTCTTTCACAGTAGGCAGCAGAGCATATGGTTTTCTCTTAATGGAACG,Distal Intergenic,12,50341231,50649098,307868,2,Prkd1-201,353311,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,8,18760,ENSMUSG00000002688,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14407,cg11776811,0.000105465,0.0000119,8.837078127,7.49E-17,gain,yes,-0.0000423,0.0000203,-2.08769651,0.037641373,neg,ns,0.010290642,0.005939872,1.732468774,0.084184719,pos,ns,1.074766733,-0.000556236,0.000204272,-2.723018434,0.006835265,neg,ns,0.15241308,Tlcd2,Tlcd2_Intron,11,75463147,75463196,75463147,75463148,50,+,CGGCAGACAGCCTGGAATTCATACCAGATGTACCCGGAATGCGCAAGCGG,"Intron (Mir22hg-202/Mir22hg-202, intron 1 of 2)",11,75461715,75469663,7949,1,Tlcd2-203,1432,Tlcd2-203;Tlcd2-201;Tlcd2-202,Tlcd2;Tlcd2;Tlcd2,0;-4883;-4883,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,6,380712,ENSMUSG00000038217,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26995,cg09302482,0.00000976,0.00000765,1.276337256,0.202791686,gain,ns,0.0000271,0.000013,2.087532415,0.037656298,pos,ns,0.003120235,0.00380659,0.819692881,0.413020973,pos,ns,0.384027895,0.0000151,0.000130908,0.115170807,0.9083843,pos,ns,0.702534819,Gdf5,Gdf5_fiveUTR,2,155945278,155945327,155945278,155945279,50,-,CGTCTCCAGTCAGCAGCTGAAAATAACTCGTTCTTGAAAGGAGAAAGCCA,Promoter (<=1kb),2,155941023,155945367,4345,2,Gdf5-201,40,Gdf5-201;Gm15557-201,Gdf5;Gm15557,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,6,14563,ENSMUSG00000038259,conserved gene and region,2,155945217,155945345,129,*,129,10,0.581395349,0.930735931,0.07751938,0.000000711,CpGisland,TRUE,U11,Tr-P
27138,cg25713291,-0.0000523,0.0000119,-4.384974541,0.0000159,loss,ns,0.0000423,0.0000202,2.086758377,0.037726763,pos,ns,-0.000146577,0.005932011,-0.024709558,0.980302529,neg,ns,0.008639877,-0.000169064,0.000204001,-0.828738727,0.407889883,neg,ns,0.674694018,Dhx35,Dhx35_Intergenic_downstream,2,159152196,159152245,159152244,159152245,50,+,GAAGCCCTGTTCTTGGCCTGGTCCCACCTGCCCATCTATAATTAAGGTCG,Distal Intergenic,2,158850629,158857368,6740,1,Dhx35-204,301567,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,14,14,71715,ENSMUSG00000027655,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11082,cg12143815,0.00000305,0.00000256,1.191874164,0.234222216,gain,ns,-0.00000906,0.00000434,-2.086438211,0.037755942,neg,ns,-0.001984336,0.00127181,-1.560245203,0.119722213,neg,ns,0.921825263,0.0000274,0.0000437,0.626372674,0.53153148,pos,ns,0.056493726,Nkx2-1,Nkx2-1_Intron,12,56535211,56535260,56535259,56535260,50,+,GGACCGAGTCCTCCTTAATTGGCTTGAGTGGAGGCTCGGGGGCTGCCTCG,"Intron (Nkx2-1-201/Nkx2-1, intron 1 of 2)",12,56531958,56536908,4951,2,Nkx2-1-201,1648,Nkx2-1-202;Nkx2-1-201,Nkx2-1;Nkx2-1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,29,21869,ENSMUSG00000001496,mapped to different genes,12,56535178,56535355,178,*,178,14,0.573033708,0.967391304,0.078651685,1.48E-09,CpGisland,TRUE,U13,Hc-P
13682,cg17435833,2.01E-08,0.00000159,0.012606283,0.989950017,gain,ns,-0.00000564,0.0000027,-2.086287419,0.037769692,neg,ns,-0.001173705,0.000792263,-1.481458066,0.139500263,neg,ns,0.855424972,0.0000539,0.0000272,1.978521835,0.048754774,pos,ns,0.961278295,Mctp2,Mctp2_Intergenic_downstream,7,72048204,72048253,72048252,72048253,50,+,TAAACTGTGAAATAGAACACAGTGTGAAAATAGATTTAACCTTCACAGCG,Distal Intergenic,7,72080413,72110583,30171,2,Mctp2-203,62330,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,5,244049,ENSMUSG00000032776,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22106,cg17790183,-0.00000193,0.00000422,-0.457441021,0.647674508,loss,ns,-0.0000149,0.00000716,-2.08600672,0.037795298,neg,ns,-0.00134784,0.002098823,-0.642188625,0.521225329,neg,ns,0.282974488,-0.000150768,0.0000722,-2.088830157,0.037538409,neg,ns,0.544130644,Ctr9,Ctr9_Exon,7,111033748,111033797,111033748,111033749,50,+,CGTATAGATGGCAATTTGGACTATAGAGACCATGAAAAAGACCAGATGAC,"Exon (Ctr9-201/Ctr9, exon 3 of 25)",7,111028951,111056377,27427,1,Ctr9-201,4797,Ctr9-201;Ctr9-207;Ctr9-206;Ctr9-204;Ctr9-203,Ctr9;Ctr9;Ctr9;Ctr9;Ctr9,0;0;4735;0;-239,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,22083,ENSMUSG00000005609,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21034,cg26638661,-0.00000702,0.00000743,-0.944402255,0.345699597,loss,ns,0.0000263,0.0000126,2.08596312,0.037799277,pos,ns,-0.001219519,0.003700149,-0.329586558,0.741934965,neg,ns,0.129634161,0.0000139,0.000127248,0.109382039,0.91297025,pos,ns,0.88584987,Dcdc5,Dcdc5_Intron,2,106133351,106133400,106133351,106133352,50,+,CGTTTCTATGGGGCTGGAATTACTTTTCGATTGCTGGGGCCACAGTGTTG,"Intron (Dcdc5-203/Dcdc5, intron 8 of 8)",2,106003336,106157718,154383,1,Dcdc5-203,130015,Dcdc5-203;Dcdc5-202,Dcdc5;Dcdc5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,22,329482,ENSMUSG00000074981,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8878,cg12968335,0.0000059,0.00000181,3.251147493,0.001275914,gain,ns,-0.00000643,0.00000308,-2.085754739,0.037818298,neg,ns,-0.001340257,0.000902958,-1.484296716,0.13874628,neg,ns,0.857778653,-0.0000196,0.0000311,-0.631011218,0.52849814,neg,ns,0.953772107,Sik3,Sik3_Exon,9,46204312,46204361,46204312,46204313,50,+,CGGGTCTGGCCTCCTCACCTGGTACCTGATCAGCATCGGTGAGTAGCCAC,"Exon (Sik3-204/Sik3, exon 15 of 25)",9,46012820,46224194,211375,1,Sik3-204,191492,Sik3-204;Sik3-202;Sik3-201;Sik3-203;Sik3-206,Sik3;Sik3;Sik3;Sik3;Sik3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,5,70661,ENSMUSG00000034135,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7377,cg25966448,-0.00000348,0.00000583,-0.596815117,0.55106643,loss,ns,-0.0000206,0.0000099,-2.085609809,0.037831531,neg,ns,-0.003200299,0.002900566,-1.103335984,0.270737034,neg,ns,0.567452334,-0.0000152,0.0000998,-0.152614584,0.878801507,neg,ns,0.883497736,R3hcc1l,R3hcc1l_Intergenic_upstream,19,42483766,42483815,42483814,42483815,50,+,TTACAGATAAATCTTGGTCCTTTCAGCAAAGCTTATCTGTAATGGGCTCG,Distal Intergenic,19,42518759,42592343,73585,1,R3hcc1l-201,-34944,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,13,52013,ENSMUSG00000025184,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10350,cg19111676,-0.0000115,0.00000566,-2.034712712,0.042730464,loss,ns,0.00002,0.00000961,2.085318954,0.037858102,pos,ns,0.006340859,0.002816784,2.251098426,0.025079585,pos,ns,1.600679655,-0.000217944,0.0000969,-2.249886133,0.025157349,neg,ns,0.896990035,Akap6,Akap6_Intron,12,53143716,53143765,53143716,53143717,50,+,CGTGCTATAGGAAATGAATTACAGAAGCAATCTACCCTAATTTGTTAACT,"Intron (Akap6-201/Akap6, intron 13 of 13)",12,52699383,53155599,456217,1,Akap6-201,444333,Akap6-201;Akap6-202,Akap6;Akap6,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,13,238161,ENSMUSG00000061603,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17640,cg03057744,-0.0000809,0.0000151,-5.359893258,0.000000163,loss,yes,0.0000535,0.0000256,2.085273994,0.03786221,pos,ns,-0.005759596,0.007509487,-0.766975953,0.443679522,neg,ns,0.352930615,-0.00016949,0.000258251,-0.656300608,0.512117574,neg,ns,0.753497262,Gm7272,Gm7272_Intergenic_upstream,14,91359100,91359149,91359100,91359101,50,-,CGCAGTAAAAACTAACCCTTGGGTTGAATCTTTACTTACAGAGGTATTTT,Distal Intergenic,14,91199439,91199878,440,2,Gm7272-201,-159271,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,639558,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24456,cg00474657,0.0000426,0.00000762,5.598623955,4.76E-08,gain,yes,-0.000027,0.0000129,-2.085261472,0.037863355,neg,ns,0.006392669,0.003791185,1.686193103,0.09276472,pos,ns,1.03261716,-0.000582938,0.000130379,-4.471121087,0.0000109,neg,ns,0.716550914,Spns1,Spns1_Exon,7,126375075,126375124,126375123,126375124,50,+,GGATGAAGGATGACCCCAGTGTCACCAGGGACCAGAAGGCAATGCCCCCG,"Exon (Spns1-201/Spns1, exon 3 of 12)",7,126370060,126377450,7391,2,Spns1-201,2326,Spns1-201;Spns1-202;Spns1-203;Spns1-204;Spns1-206;Spns1-211;Spns1-205;Spns1-210;Spns1-209;Spns1-207;Spns1-208;Spns1-212;Spns1-213,Spns1;Spns1;Spns1;Spns1;Spns1;Spns1;Spns1;Spns1;Spns1;Spns1;Spns1;Spns1;Spns1,0;0;0;0;0;0;-2156;0;-2513;0;-712;0;2297,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,73658,ENSMUSG00000030741,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23016,cg09985753,0.0000296,0.0000111,2.662718195,0.008155854,gain,ns,0.0000394,0.0000189,2.085191378,0.037869761,pos,ns,0.011714185,0.005528893,2.118721497,0.034909102,pos,ns,1.457061323,-0.0000647,0.000190138,-0.340027313,0.734066236,neg,ns,0.575373002,Tmco5,Tmco5_Exon,2,116850431,116850480,116850431,116850432,50,-,CGTGTTGCCATCTGGGAAGAAAAACAACATGGCAGAGGAGCAGCTGGTGA,"Exon (Gm13990-201/Gm13990-201, exon 4 of 4)",2,116878691,116892181,13491,1,Tmco5-202,-28260,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,14,67356,ENSMUSG00000027355,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23378,cg06833964,-0.000000781,0.000000926,-0.844022801,0.399307503,loss,ns,0.00000328,0.00000157,2.085185528,0.037870296,pos,ns,0.000451077,0.000460816,0.978865504,0.328409716,pos,ns,0.483584003,-0.00000978,0.0000158,-0.617270084,0.537509715,neg,ns,0.981875594,Smg1,Smg1_Exon,7,118210820,118210869,118210868,118210869,50,-,GATCCTCCGAAGAAGATTCGACAGTCGAGACTCATCAGAATAAGACATCG,"Exon (Smg1-201/Smg1, exon 4 of 63)",7,118131308,118243637,112330,2,Smg1-201,32768,Smg1-201;Smg1-204;Smg1-209;Smg1-206;Smg1-203;Smg1-205,Smg1;Smg1;Smg1;Smg1;Smg1;Smg1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,9,233789,ENSMUSG00000030655,conserved gene but different region,7,118210797,118210873,77,*,77,8,0.532467533,1.473684211,0.103896104,0.00000163,CpGisland,TRUE,U10,Tr-S
17141,cg10732227,0.0000138,0.00000489,2.81516279,0.005187323,gain,ns,0.0000173,0.00000831,2.085162368,0.037872413,pos,ns,0.00876143,0.002433456,3.600405576,0.00036982,pos,ns,3.432009141,-0.000194641,0.0000837,-2.32584346,0.020671697,neg,ns,0.879721193,Brd1,Brd1_Exon,15,88712775,88712824,88712775,88712776,50,+,CGGTGTCCCTGGCATTGTACTTCATGCAGTTATCTATAATGAGATCAAAA,"Exon (Brd1-203/Brd1, exon 6 of 13)",15,88687034,88734233,47200,2,Brd1-203,21409,Brd1-203;Brd1-202;Brd1-201;Brd1-206;Brd1-204,Brd1;Brd1;Brd1;Brd1;Brd1,0;0;0;6331;4216,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,223770,ENSMUSG00000022387,conserved gene and region,15,88712636,88712776,141,*,141,10,0.659574468,0.674641148,0.070921986,0.0000016,CpGisland,TRUE,U10,Tr-S
10582,cg09712406,-0.0000271,0.00000348,-7.783732095,1.06E-13,loss,yes,0.0000123,0.00000591,2.084927266,0.037893909,pos,ns,-0.002666707,0.001732123,-1.539559767,0.124687785,neg,ns,0.904176091,0.0000605,0.0000596,1.014875164,0.310956767,pos,ns,0.91696942,Gm5821,Gm5821_Intergenic_upstream,18,54580827,54580876,54580827,54580828,50,-,CGACACCACCAGGACTAATTACGTTGTCCTTGCCAAAGGGGTAGTTGAAT,Distal Intergenic,18,54766132,54766380,249,1,Gm5821-201,-185305,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,4,545257,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24850,cg12304261,-0.000000768,0.00000339,-0.226267407,0.821142563,loss,ns,-0.000012,0.00000577,-2.084643077,0.037919906,neg,ns,-0.003050717,0.001688952,-1.806278475,0.071844572,neg,ns,1.143606037,0.0000217,0.0000581,0.373013842,0.709393066,pos,ns,0.907753098,Gdf11,Gdf11_Exon,10,128886197,128886246,128886245,128886246,50,-,CTGGGATCAAAGGCGTTGATCTCGATGCCCCAGTTGCTCTGTGGCTGGCG,"Exon (Gdf11-201/Gdf11, exon 2 of 3)",10,128882295,128891718,9424,2,Gdf11-201,5472,Gdf11-201,Gdf11,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,7,14561,ENSMUSG00000025352,conserved gene and region,10,128886195,128886438,244,*,244,15,0.594262295,0.697940503,0.06147541,1.03E-08,CpGisland,TRUE,U11,Tr-P
6747,cg23705797,0.0000924,0.0000246,3.765045883,0.000199184,gain,ns,0.0000869,0.0000417,2.084423434,0.03794001,pos,ns,0.031010143,0.012219055,2.537851195,0.011642996,pos,ns,1.93393527,-0.000420238,0.000420212,-1.000061778,0.318060581,neg,ns,0.576676809,Lhx2,Lhx2_Promoter,2,38336149,38336198,38336149,38336150,50,-,CGACTACTTTAATTTTGTTGAAATTAAGATGAATAAGTGACGGCTTATGG,Promoter (3-4kb),2,38339281,38369199,29919,1,Lhx2-203,-3132,Lhx2-203;Lhx2-204;Lhx2-202,Lhx2;Lhx2;Lhx2,0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,33,16870,ENSMUSG00000000247,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
4966,cg01531512,-0.0000233,0.00000915,-2.549125452,0.011280865,loss,ns,-0.0000324,0.0000155,-2.084390195,0.037943053,neg,ns,-0.009315118,0.00455423,-2.045377076,0.041661586,neg,ns,1.380264197,-0.000121909,0.00015662,-0.778374121,0.436942188,neg,ns,0.154556237,Pknox1,Pknox1_fiveUTR,17,31564869,31564918,31564917,31564918,50,+,TGATGAAGATTGGCACCCAGGTAAGCTGTCACTCAACCGCTCCGCCGCCG,Promoter (<=1kb),17,31564734,31607693,42960,1,Pknox1-201,135,Pknox1-201;Pknox1-206;Pknox1-212;Pknox1-209;Pknox1-202;Pknox1-208,Pknox1;Pknox1;Pknox1;Pknox1;Pknox1;Pknox1,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,8,8,18771,ENSMUSG00000006705,conserved gene but different region,17,31564906,31565621,716,*,716,118,0.791899441,1.06992883,0.164804469,2.89E-119,CpGisland,TRUE,U1,Pr-A
14720,cg14919009,0.0000072,0.00000693,1.039492041,0.299386023,gain,ns,0.0000245,0.0000118,2.084130127,0.03796687,pos,ns,0.00375199,0.003447175,1.088424484,0.277253205,pos,ns,0.557123424,0.0000914,0.000118548,0.771263726,0.441138097,pos,ns,0.865218455,Rnf165,Rnf165_threeUTR,18,77458678,77458727,77458726,77458727,50,-,CATTTTTGTTTTTCTATCAGCTGAAATCGCTCTAGCATTTGCTCTACGCG,3' UTR,18,77456110,77565136,109027,2,Rnf165-201,106409,Rnf165-201;Rnf165-202;Rnf165-207,Rnf165;Rnf165;Rnf165,0;0;8421,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,10,21,225743,ENSMUSG00000025427,conserved gene and region,18,77458705,77458805,101,*,101,9,0.603960396,0.977419355,0.089108911,0.000001,CpGisland,TRUE,U15,NS
3292,cg02028344,0.0000425,0.0000359,1.185381813,0.236774377,gain,ns,0.00012701,0.0000609,2.08396394,0.037982096,pos,ns,0.048043736,0.017855245,2.690735134,0.007516104,pos,ns,2.124007195,-0.000967518,0.00061404,-1.575658146,0.116124541,neg,ns,0.904775837,Ahsa2,Ahsa2_threeUTR,11,23489618,23489667,23489618,23489619,50,-,CGGAACAACCACAAGAAATTTGATTCTGTAAAGAATCCTCTTTAGCTGTG,3' UTR,11,23487882,23497930,10049,2,Ahsa2-202,8263,Ahsa2-202;Ahsa2-201;Ahsa2-205;Ahsa2-204;Ahsa2-203;Ahsa2-208;Ahsa2-207;Ahsa2-206;Usp34-208;Usp34-205;Usp34-202;Usp34-201,Ahsa2;Ahsa2;Ahsa2;Ahsa2;Ahsa2;Ahsa2;Ahsa2;Ahsa2;Usp34;Usp34;Usp34;Usp34,0;0;0;0;1757;1410;8238;8228;0;0;0;2813,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,2,268390,ENSMUSG00000020288,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15786,cg24854395,0.00000279,0.00000319,0.874992562,0.382255361,gain,ns,0.0000113,0.00000542,2.08394445,0.037983882,pos,ns,0.003647741,0.001587458,2.297851155,0.022235905,pos,ns,1.652945199,-0.000114043,0.0000546,-2.088987581,0.03752413,neg,ns,0.93681083,Rasl10b,Rasl10b_Exon,11,83417882,83417931,83417882,83417883,50,+,CGGAGTGTCCACGCCTACATCCTGGTCTACGACATCTGCTGCTTTGACAG,"Exon (Rasl10b-201/Rasl10b, exon 3 of 4)",11,83409137,83418834,9698,1,Rasl10b-201,8745,Gas2l2-201;Gas2l2-202;Rasl10b-201;Rasl10b-204;Rasl10b-202;Rasl10b-203,Gas2l2;Gas2l2;Rasl10b;Rasl10b;Rasl10b;Rasl10b,11524;11524;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,276952,ENSMUSG00000020684,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9170,cg25103679,-0.00000535,0.00000348,-1.537634439,0.125158054,loss,ns,-0.0000123,0.00000591,-2.083662414,0.038009735,neg,ns,-0.005069357,0.00173059,-2.929265263,0.003649672,neg,ns,2.437746121,0.000126423,0.0000595,2.124223302,0.034442775,pos,ns,0.059460578,Tgfbr1,Tgfbr1_Promoter,4,47352213,47352262,47352261,47352262,50,+,AAAGGACTAGTCTGACAGGAAGAATTACAAATCTGGAGCTCATTTTGGCG,Promoter (<=1kb),4,47353222,47414931,61710,1,Tgfbr1-201,-960,Tgfbr1-201;Tgfbr1-202;Tgfbr1-204;Tgfbr1-205,Tgfbr1;Tgfbr1;Tgfbr1;Tgfbr1,-960;-1045;-1336;-1348,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,1,21812,ENSMUSG00000007613,conserved gene but different region,4,47352261,47352788,528,*,528,34,0.575757576,0.823184153,0.064393939,1.27E-19,CpGisland,TRUE,U2,Pr-W
719,cg24326491,-0.0000114,0.00000241,-4.711859553,0.00000371,loss,ns,0.00000853,0.0000041,2.082949985,0.038075107,pos,ns,0.001908659,0.001200437,1.589970258,0.112860778,pos,ns,0.94745696,-0.000180754,0.0000413,-4.37842458,0.0000164,neg,ns,0.972638141,Nipbl,Nipbl_Intron,15,8291714,8291763,8291714,8291715,50,-,CGGCAATGAGACGCACCGTGACCGCCAGCGCCAAGGGGTTAACATATACT,"Intron (Nipbl-201/Nipbl, intron 46 of 46)",15,8290617,8444463,153847,2,Nipbl-201,152700,Nipbl-201,Nipbl,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,36,71175,ENSMUSG00000022141,conserved gene and region,15,8291652,8291795,144,*,144,11,0.506944444,1.194570136,0.076388889,0.000000184,CpGisland,TRUE,U10,Tr-S
7526,cg18881568,-0.0000122,0.00000468,-2.603524169,0.009671036,loss,ns,0.0000165,0.00000794,2.08292135,0.038077737,pos,ns,0.00747091,0.002327269,3.210162152,0.001465681,pos,ns,2.833960421,-0.0000964,0.00008,-1.20484134,0.229183541,neg,ns,0.071472419,Sobp,Sobp_threeUTR,10,43003235,43003284,43003283,43003284,50,-,GCACACAAGTGAATCTACCCTGTTATCCTCCACCCACTGATTGAGGATCG,3' UTR,10,43002500,43174530,172031,2,Sobp-201,171246,Sobp-201,Sobp,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,19,109205,ENSMUSG00000038248,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
23005,cg06778009,0.00000682,0.00000355,1.923817284,0.055292922,gain,ns,-0.0000126,0.00000603,-2.082519242,0.038114679,neg,ns,-0.001040332,0.00176567,-0.589199655,0.556156468,neg,ns,0.254803008,-0.0000416,0.0000607,-0.685042712,0.493828858,neg,ns,0.927454153,Tesk2,Tesk2_threeUTR,4,116805636,116805685,116805684,116805685,50,-,TGGTACAGGAACACCAAGTCTATAAGGCCATTGTGTAGCACCAGGGGCCG,3' UTR,4,116720969,116805956,84988,1,Tesk2-203,84667,Mutyh-201;Mutyh-203;Mutyh-202;Mutyh-206;Tesk2-201;Tesk2-203;Tesk2-202;Tesk2-204;Toe1-202;Toe1-201;Toe1-208;Toe1-207;Toe1-204;Toe1-203;Toe1-206;Toe1-205,Mutyh;Mutyh;Mutyh;Mutyh;Tesk2;Tesk2;Tesk2;Tesk2;Toe1;Toe1;Toe1;Toe1;Toe1;Toe1;Toe1;Toe1,-2038;-2040;-2053;-2063;84688;0;63953;33873;0;0;-444;-31;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,230661,ENSMUSG00000033985,mapped to different genes,4,116805684,116805723,40,*,40,6,0.625,1.538461539,0.15,0.00000752,CpGisland,TRUE,U10,Tr-S
3752,cg25441162,0.00000628,0.00000321,1.957674309,0.05116513,gain,ns,-0.0000113,0.00000545,-2.082413318,0.038124415,neg,ns,-0.004789648,0.001596317,-3.000436467,0.002914705,neg,ns,2.535405397,0.000117107,0.0000549,2.133200828,0.033693332,pos,ns,0.926610893,Tprg,Tprg_Intergenic_upstream,16,25255851,25255900,25255899,25255900,50,+,GCATTAAATCCAGTCTCCAGAATGTCTCTTGTTACCACATTGTCAATCCG,Distal Intergenic,16,25286817,25422344,135528,1,Tprg-201,-30917,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,3,71338,ENSMUSG00000048399,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7744,cg14912619,0.00000904,0.0000122,0.740742564,0.459410241,gain,ns,-0.0000431,0.0000207,-2.082088707,0.038154266,neg,ns,0.025547627,0.006070884,4.208221937,0.0000337,pos,ns,4.471760282,-0.000572683,0.000208777,-2.743033686,0.006441631,neg,ns,0.545493325,Cd83,Cd83_Intergenic_downstream,13,44043724,44043773,44043724,44043725,50,+,CGAGCTGCATGCATGCCAAATCAGGTCATTCACAAATATAGAACAAACGT,Distal Intergenic,13,43785185,43803128,17944,1,Cd83-202,258539,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,3,12522,ENSMUSG00000015396,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
980,cg14467637,0.0000562,0.0000182,3.095034331,0.002147429,gain,ns,-0.0000642,0.0000308,-2.081848873,0.038176334,neg,ns,0.056325108,0.009034074,6.23474059,1.48E-09,pos,ns,8.830231303,-0.00142518,0.000310681,-4.587278329,0.00000653,neg,ns,0.577984752,Qk,Qk_Exon,17,10216298,10216347,10216298,10216299,50,-,CGTTTGGCATGACAGCGGTCTGTATTTGTCTGATCAAAGGCATTATGGTA,"Exon (Qk-204/Qk, exon 6 of 8)",17,10202601,10319380,116780,2,Qk-204,103033,Qk-204;Qk-202;Qk-203;Qk-201;Qk-206;Qk-205,Qk;Qk;Qk;Qk;Qk;Qk,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,17,19317,ENSMUSG00000062078,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22384,cg22763984,0.000169419,0.0000206,8.211958842,5.94E-15,gain,yes,0.000073,0.000035,2.081746759,0.038185733,pos,ns,0.020692308,0.010268172,2.015189046,0.044747715,pos,ns,1.349229133,-0.000578325,0.000353122,-1.637750343,0.102488387,neg,ns,0.437173227,Arl15,Arl15_Intron,13,113880196,113880245,113880244,113880245,50,-,AACAAACAGTTGTGTTTTAGGATTTCTCAATAGACTGTCTAGACTGGCCG,"Intron (Arl15-201/Arl15, intron 1 of 4)",13,113794505,114157461,362957,1,Arl15-201,85691,Arl15-201;Arl15-203;Arl15-202,Arl15;Arl15;Arl15,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,6,218639,ENSMUSG00000042348,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18625,cg12502231,0.000202371,0.000013,15.52651345,1.28E-40,gain,yes,-0.0000461,0.0000221,-2.081725213,0.038187717,neg,ns,0.008153664,0.006487109,1.256902517,0.209735135,pos,ns,0.67832881,0.000227427,0.000223091,1.019433862,0.308791956,pos,ns,0.42620193,Hoxb3,Hoxb3_Intron,11,96341190,96341239,96341190,96341191,50,-,CGGAGAGTATGTCTCAATGATTTATGGCCCATATGACTCCAATCTCGGTT,"Intron (Hoxb3-202/Hoxb3, intron 2 of 3)",11,96323326,96347930,24605,1,Hoxb3-202,17864,Hoxb3-202;Hoxb3-203;Hoxb3-204;Hoxb3-201,Hoxb3;Hoxb3;Hoxb3;Hoxb3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,19,15410,ENSMUSG00000048763,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
11783,cg01097137,-0.0000102,0.00000215,-4.728789251,0.00000343,loss,ns,-0.0000076,0.00000365,-2.081452968,0.038212786,neg,ns,0.000419577,0.001069346,0.392367657,0.695056211,pos,ns,0.157980072,-0.0000157,0.0000368,-0.42627566,0.670202832,neg,ns,0.947991812,Mbnl1,Mbnl1_Intron,3,60614581,60614630,60614629,60614630,50,+,TGCACTGCTGCCCCCATGATGCACCTCTGCTTGCTGTTTATGTTAATGCG,"Intron (Mbnl1-216/Mbnl1, intron 4 of 6)",3,60473074,60621458,148385,1,Mbnl1-216,141507,Mbnl1-216;Mbnl1-211;Mbnl1-201;Mbnl1-202;Mbnl1-203;Mbnl1-218;Mbnl1-219;Mbnl1-214;Mbnl1-207;Mbnl1-205;Mbnl1-212;Mbnl1-210;Mbnl1-215;Mbnl1-223;Mbnl1-206,Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1,0;0;0;0;0;0;0;0;0;0;0;18940;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,36,56758,ENSMUSG00000027763,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23695,cg19976483,0.00000418,0.00000516,0.809220368,0.419009051,gain,ns,-0.0000182,0.00000877,-2.081438103,0.038214155,neg,ns,-0.001205957,0.002568244,-0.469564709,0.638996152,neg,ns,0.194501757,-0.000110449,0.0000883,-1.250530423,0.212048922,neg,ns,0.875770363,Mga,Mga_Exon,2,119926373,119926422,119926421,119926422,50,+,CTTTAGGCATCCCTCAAAACTAAACCTATCCACACAATCATAAGGAAACG,"Exon (Mga-201/Mga, exon 9 of 25)",2,119897228,119967749,70522,1,Mga-201,29145,Mga-201;Mga-202;Mga-203;Mga-204;Mga-206;Mga-215;Mga-211,Mga;Mga;Mga;Mga;Mga;Mga;Mga,0;0;0;0;0;0;4697,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,9,29808,ENSMUSG00000033943,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24218,cg21881832,-0.0000609,0.0000138,-4.418840452,0.0000137,loss,ns,0.0000487,0.0000234,2.081390142,0.038218574,pos,ns,-0.015129867,0.006857875,-2.206203405,0.02810289,neg,ns,1.551249023,-0.000222378,0.000235842,-0.942912917,0.346459695,neg,ns,0.626188482,Gm12902,Gm12902_Intergenic_downstream,4,123962858,123962907,123962858,123962859,50,-,CGAGTTTCATTCATGAGGATAATCTTTAATTGATGTTAAATATAGGGATC,Distal Intergenic,4,123926234,123926555,322,1,Gm12902-201,36673,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,34,34,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23180,cg10259955,0.000129011,0.0000155,8.298475639,3.28E-15,gain,yes,-0.000055,0.0000264,-2.08090367,0.038263411,neg,ns,0.021523861,0.007737585,2.781728389,0.00573823,pos,ns,2.241222017,-0.000626124,0.000266095,-2.353011214,0.019246611,neg,ns,0.338757638,Rnf220,Rnf220_Intron,4,117391550,117391599,117391598,117391599,50,-,AGCTCAACGAGAGCTCTCTGCTAACCCCGATAAGCCTTGGGCTCTTAGCG,"Intron (Rnf220-201/Rnf220, intron 2 of 14)",4,117271463,117497052,225590,2,Rnf220-201,105453,Rnf220-201;Rnf220-207,Rnf220;Rnf220,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19244,cg20925142,-0.0000387,0.00000618,-6.259459992,1.29E-09,loss,yes,-0.0000219,0.0000105,-2.080501248,0.038300536,neg,ns,0.003040342,0.003077975,0.987773605,0.32403387,pos,ns,0.489409592,-0.000653629,0.000105851,-6.174971413,2.07E-09,neg,yes,0.704840397,Kmt2d,Kmt2d_Exon,15,98834511,98834560,98834559,98834560,50,-,ATTTCCGACAATTCCAGGCTCCACAGTGGCAGGGGATCTTGTGCTGATCG,"Exon (Kmt2d-202/Kmt2d, exon 55 of 55)",15,98831669,98871183,39515,2,Kmt2d-202,36623,Kmt2d-202;Kmt2d-201;Kmt2d-204;Prkag1-201;Prkag1-206;Prkag1-203;Prkag1-205,Kmt2d;Kmt2d;Kmt2d;Prkag1;Prkag1;Prkag1;Prkag1,0;0;0;-2990;-3540;-3057;-3023,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,16,381022,ENSMUSG00000048154,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18,cg03810004,0.00000268,0.00000233,1.151725169,0.250321489,gain,ns,-0.00000822,0.00000395,-2.080483421,0.038302181,neg,ns,-0.001794165,0.001157965,-1.549411494,0.122303094,neg,ns,0.912562556,0.00000472,0.0000398,0.118537877,0.905718258,pos,ns,0.937864884,Patz1,Patz1_Exon,11,3299070,3299119,3299070,3299071,50,+,CGCTCCCACCTGGCCTGTCATGAAGACAAGGTGCCCTGCCAGGTGTGTGG,"Exon (Patz1-204/Patz1, exon 3 of 4)",11,3289167,3309083,19917,1,Patz1-204,9903,Patz1-204;Patz1-210;Patz1-207;Patz1-203;Patz1-205;Patz1-201;Patz1-202;Patz1-206;Patz1-211;Patz1-208;Patz1-212,Patz1;Patz1;Patz1;Patz1;Patz1;Patz1;Patz1;Patz1;Patz1;Patz1;Patz1,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,9,56218,ENSMUSG00000020453,mapped to different genes,11,3298967,3299071,105,*,105,9,0.628571429,0.880708295,0.085714286,0.00000139,CpGisland,TRUE,U10,Tr-S
25055,cg02574410,-0.00000514,0.00000144,-3.562532919,0.000425047,loss,ns,0.0000051,0.00000245,2.080427747,0.03830732,pos,ns,0.000744609,0.000718173,1.036809869,0.300632536,pos,ns,0.52196402,-0.00000458,0.0000247,-0.185433672,0.853010167,neg,ns,0.039046089,Nucks1,Nucks1_fiveUTR,1,131910507,131910556,131910507,131910508,50,-,CGCATTTTCGGCTGGTTTGATTCATCCATTTTGAAGAGACGGGGGAGCGG,Promoter (<=1kb),1,131910534,131932679,22146,1,Nucks1-203,0,Gm29105-201;Nucks1-203;Nucks1-201,Gm29105;Nucks1;Nucks1,3342;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,1,98415,ENSMUSG00000026434,conserved gene but different region,1,131910245,131911218,974,*,974,109,0.704312115,0.908893227,0.111909651,2.07E-88,CpGisland,TRUE,U1,Pr-A
21230,cg06169018,-0.00000128,0.00000274,-0.466548248,0.641150813,loss,ns,-0.00000968,0.00000465,-2.08038484,0.038311281,neg,ns,-0.003894821,0.001363466,-2.856559155,0.004571939,neg,ns,2.3398996,0.0000875,0.0000469,1.865168235,0.063102434,pos,ns,0.940570718,Ipo11,Ipo11_Exon,13,106879677,106879726,106879725,106879726,50,-,TTGAATTTCACAGAAATCCACTGACCGATGAGCCAAATCACCCTGCGTCG,"Exon (Ipo11-204/Ipo11, exon 15 of 30)",13,106794439,106925150,130712,2,Ipo11-204,45424,Ipo11-204;Ipo11-201;Ipo11-203,Ipo11;Ipo11;Ipo11,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,76582,ENSMUSG00000042590,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14112,cg05159472,0.000062,0.00000516,12.02109968,1.39E-27,gain,yes,-0.0000182,0.00000876,-2.080338446,0.038315564,neg,ns,0.000998657,0.002567074,0.38902529,0.697524516,pos,ns,0.156440523,0.000111867,0.0000883,1.267164191,0.206047692,pos,ns,0.157949068,Hoxd11,Hoxd11_Exon,2,74684022,74684071,74684022,74684023,50,+,CGGATGCTCAACCTCACTGACCGGCAAGTCAAAATCTGGTTCCAGAATCG,"Exon (Hoxd11-201/Hoxd11, exon 2 of 2)",2,74679557,74687016,7460,1,Hoxd11-201,4465,Hoxd11-201;Hoxd11-202,Hoxd11;Hoxd11,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,14,15431,ENSMUSG00000042499,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
14667,cg14900302,0.000000102,0.0000013,0.078570777,0.937424724,gain,ns,-0.00000459,0.00000221,-2.08013217,0.038334612,neg,ns,0.001355113,0.000646763,2.095224712,0.036962117,pos,ns,1.432243162,-0.0000534,0.0000222,-2.402876294,0.016854148,neg,ns,0.961392133,Nr3c2,Nr3c2_Exon,8,77187559,77187608,77187607,77187608,50,+,TCCAGTATTCTTGGATGTGTCTATCATCATTTGCCTTGAGCTGGAGATCG,"Exon (Nr3c2-204/Nr3c2, exon 6 of 9)",8,76899772,77245012,345241,1,Nr3c2-204,287787,Nr3c2-204;Nr3c2-208;Nr3c2-203;Nr3c2-202;Nr3c2-201;Nr3c2-205,Nr3c2;Nr3c2;Nr3c2;Nr3c2;Nr3c2;Nr3c2,0;0;0;0;0;59546,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,4,110784,ENSMUSG00000031618,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20011,cg02599705,-0.000000423,0.00000191,-0.221776978,0.824633526,loss,ns,-0.00000674,0.00000324,-2.079599959,0.038383794,neg,ns,-0.00125737,0.000949943,-1.323627004,0.186602229,neg,ns,0.729083174,0.0000356,0.0000327,1.089431315,0.276809879,pos,ns,0.963937873,Vangl1,Vangl1_Exon,3,102163327,102163376,102163375,102163376,50,-,AAGGCCAGGTGCTGCAGGATGCTCTCCATGCTGTGGTAGTTCTGCTGCCG,"Exon (Vangl1-201/Vangl1, exon 7 of 8)",3,102153583,102204693,51111,2,Vangl1-201,41317,Vangl1-201;Vangl1-202;Vangl1-205;Vangl1-208;Vangl1-204;Vangl1-207,Vangl1;Vangl1;Vangl1;Vangl1;Vangl1;Vangl1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,229658,ENSMUSG00000027860,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
16869,cg13341941,-0.000000323,0.00000642,-0.050269485,0.959940014,loss,ns,0.0000227,0.0000109,2.079412893,0.038401094,pos,ns,0.005669272,0.003193144,1.775451713,0.076804372,pos,ns,1.114614058,-0.000218281,0.000109812,-1.987770146,0.047716577,neg,ns,0.923771901,Ythdc1,Ythdc1_threeUTR,5,86829430,86829479,86829478,86829479,50,-,ATCATGTTTTATACCGGTCGTAAATGCACTCCCCAAACTACAGGAAAGCG,3' UTR,5,86804221,86836654,32434,1,Ythdc1-202,25209,Ythdc1-202;Ythdc1-203;Ythdc1-208;Ythdc1-201;Ythdc1-207;Ythdc1-206;Ythdc1-205;Ythdc1-204,Ythdc1;Ythdc1;Ythdc1;Ythdc1;Ythdc1;Ythdc1;Ythdc1;Ythdc1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,12,17,231386,ENSMUSG00000035851,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10552,cg06592646,0.00000906,0.00000709,1.276808299,0.202625511,gain,ns,-0.0000251,0.0000121,-2.079386832,0.038403505,neg,ns,-0.003084359,0.003530273,-0.873688524,0.382964198,neg,ns,0.416841825,0.00000117,0.000121406,0.009675929,0.99228607,pos,ns,0.814558174,Gm12469,Gm12469_Intergenic_upstream,4,54329030,54329079,54329078,54329079,50,+,CATTTGGAAATACAGTGCAGTATAGCTAATGTTTACCACTTGACTACTCG,Distal Intergenic,4,54235670,54235876,207,2,Gm12469-201,-93154,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,9,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6353,cg14572501,0.00000075,0.0000036,0.208144602,0.835252745,gain,ns,0.0000127,0.00000612,2.079322436,0.038409462,pos,ns,0.004212791,0.001793245,2.349255328,0.019438341,pos,ns,1.711340807,-0.000145995,0.0000617,-2.36737768,0.018528476,neg,ns,0.93001709,Btaf1,Btaf1_Exon,19,36972920,36972969,36972968,36972969,50,+,TTAGTTCCACGTGTCTGGCCTTTTTTGCATCACACTATATCATCAGTTCG,"Exon (Btaf1-201/Btaf1, exon 14 of 38)",19,36926079,37012752,86674,1,Btaf1-201,46841,Btaf1-201;Btaf1-203,Btaf1;Btaf1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,107182,ENSMUSG00000040565,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27734,cg26699458,-0.00000425,0.00000367,-1.158972751,0.247359267,loss,ns,0.000013,0.00000623,2.079293498,0.03841214,pos,ns,0.005182212,0.00182508,2.839444447,0.004817822,pos,ns,2.317149259,-0.000154753,0.0000628,-2.465613672,0.014219196,neg,ns,0.942062264,Cdc42bpa,Cdc42bpa_Exon,1,180117667,180117716,180117715,180117716,50,-,GTATAGAGCACCAAGACTCACAGCATTCTTTCTTGGCATTTTTGAATACG,"Exon (Cdc42bpa-203/Cdc42bpa, exon 21 of 35)",1,179960472,180163156,202685,1,Cdc42bpa-203,157195,Cdc42bpa-203;Cdc42bpa-204;Cdc42bpa-201;Cdc42bpa-202;Cdc42bpa-218;Cdc42bpa-207;Cdc42bpa-216;Cdc42bpa-212;Cdc42bpa-209;Cdc42bpa-214;Cdc42bpa-211,Cdc42bpa;Cdc42bpa;Cdc42bpa;Cdc42bpa;Cdc42bpa;Cdc42bpa;Cdc42bpa;Cdc42bpa;Cdc42bpa;Cdc42bpa;Cdc42bpa,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,10,226751,ENSMUSG00000026490,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19495,cg19323157,0.0000081,0.00000769,1.053510144,0.292927685,gain,ns,0.0000272,0.0000131,2.079266676,0.038414621,pos,ns,0.01155754,0.00382663,3.020292171,0.002735382,pos,ns,2.562982009,-0.000183395,0.000131597,-1.393602847,0.164435844,neg,ns,0.833185916,Pja1,Pja1_Intergenic_downstream,X,99456457,99456506,99456505,99456506,50,-,AAAAGATGACAAGTCGCCCTGTCAGAGCTCACCTTGGCAGGGAGCAGGCG,Distal Intergenic,20,99466146,99470672,4527,2,Pja1-204,14215,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,17,18744,ENSMUSG00000034403,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1309,cg24226527,0.000014,0.00000169,8.290367402,3.47E-15,gain,yes,-0.00000598,0.00000288,-2.079228189,0.038418182,neg,ns,0.000593441,0.000842781,0.704146814,0.48186995,pos,ns,0.317070156,0.0000253,0.000029,0.873472952,0.383081455,pos,ns,0.025953385,Fezf2,Fezf2_Intergenic_downstream,14,12340433,12340482,12340481,12340482,50,+,TGAATCGGAGGTACTAAAAATACCCCCGCGACAGCCTGAGGAAGCTGTCG,Downstream (1-2kb),14,12342094,12345844,3751,2,Fezf2-203,5362,Fezf2-203;Fezf2-201;Fezf2-202,Fezf2;Fezf2;Fezf2,0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,21,45,54713,ENSMUSG00000021743,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
11656,cg00627621,-0.00000582,0.00000233,-2.50225752,0.012855218,loss,ns,0.00000822,0.00000395,2.079089081,0.038431056,pos,ns,0.001129735,0.001158616,0.975072642,0.330284484,pos,ns,0.481111828,-0.000028,0.0000398,-0.702490303,0.482900598,neg,ns,0.049938172,Trib1,Trib1_fiveUTR,15,59648516,59648565,59648516,59648517,50,-,CGCAGCCACCTCATTGCACAACCCGGCTTCCCAACTGTTTACACAGCCCG,Promoter (<=1kb),15,59648350,59657099,8750,1,Trib1-201,166,Trib1-201;Trib1-202,Trib1;Trib1,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,5,211770,ENSMUSG00000032501,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
8064,cg02538199,0.0000588,0.00000806,7.288489397,2.62E-12,gain,yes,-0.0000285,0.0000137,-2.07892957,0.038445823,neg,ns,-0.010375643,0.004013506,-2.585182059,0.010189242,neg,ns,1.991858103,0.000524682,0.000138024,3.801379309,0.00017324,pos,ns,0.265484176,Pax5,Pax5_Promoter,4,44710732,44710781,44710780,44710781,50,-,AAAGCGTCCGAAGGCACCGTGAAATGATTAAGGAACTAAAGAGCTTCTCG,Promoter (<=1kb),4,44524757,44710487,185731,2,Pax5-201,-294,Pax5-201;Pax5-202;Pax5-203;Pax5-204;Pax5-205;Pax5-207;Pax5-206;Pax5-209;Pax5-210;Pax5-212;Pax5-213;Pax5-214;Pax5-215,Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5,0;0;0;0;0;0;0;0;0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,10,45,18507,ENSMUSG00000014030,conserved gene and region,4,44710639,44710987,349,*,349,27,0.601719198,0.855004083,0.077363897,8.51E-18,CpGisland,TRUE,NA,NRS
2530,cg22498951,0.00000236,0.00000425,0.554600682,0.57956772,gain,ns,0.000015,0.00000722,2.078900914,0.038448477,pos,ns,0.009362812,0.002116338,4.424061733,0.0000134,pos,ns,4.872022979,-0.000241212,0.0000728,-3.314236365,0.00102786,neg,ns,0.895017727,Bclaf1,Bclaf1_Intron,10,20327426,20327475,20327474,20327475,50,+,CAGATAGCTTGCTTCATAATGTGACATTTCATAGCTCATGACTTTATACG,"Intron (Bclaf1-202/Bclaf1, intron 6 of 11)",10,20312469,20342501,30033,1,Bclaf1-202,14957,Bclaf1-202;Bclaf1-204;Bclaf1-201;Bclaf1-205;Bclaf1-208;Bclaf1-203;Bclaf1-210;Bclaf1-207;Bclaf1-209,Bclaf1;Bclaf1;Bclaf1;Bclaf1;Bclaf1;Bclaf1;Bclaf1;Bclaf1;Bclaf1,0;0;0;14898;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,7,72567,ENSMUSG00000037608,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9983,cg08243549,0.0000109,0.00000289,3.762034057,0.000201492,gain,ns,-0.0000102,0.00000491,-2.078867048,0.038451613,neg,ns,0.003622602,0.001438116,2.518992271,0.012271957,pos,ns,1.911086182,-0.000147102,0.0000495,-2.97435095,0.003166679,neg,ns,0.932853347,Hectd1,Hectd1_Exon,12,51769320,51769369,51769320,51769321,50,-,CGGTAAGAGTTTGAGCCACCAGCATCCCAGGTGACATCAATCCAGCCTGG,"Exon (Hectd1-201/Hectd1, exon 25 of 43)",12,51743722,51829536,85815,2,Hectd1-201,60167,Hectd1-201;Hectd1-202;Hectd1-204,Hectd1;Hectd1;Hectd1,0;0;-4089,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,19,19,207304,ENSMUSG00000035247,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1741,cg21027178,-0.0000115,0.00000449,-2.551991383,0.011190428,loss,ns,-0.0000159,0.00000764,-2.078726932,0.038464589,neg,ns,-0.007792407,0.002236966,-3.483472274,0.000566188,neg,ns,3.247039608,0.000151871,0.0000769,1.974170769,0.049249769,pos,ns,0.908380796,Gm5513,Gm5513_Intergenic_downstream,19,14940717,14940766,14940717,14940718,50,+,CGACAGAGGCTTTCATTACACGCTGATTATGGTGATAAAATTCCCAGCAC,Distal Intergenic,19,14959549,14960766,1218,2,Gm5513-201,20000,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,22,433225,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13933,cg17560352,-0.0000114,0.00000934,-1.217560617,0.22431697,loss,ns,-0.000033,0.0000159,-2.078587339,0.038477522,neg,ns,-0.015637393,0.004648368,-3.364061004,0.000864501,neg,ns,3.063234293,0.000402914,0.000159857,2.520463379,0.012221828,pos,ns,0.100527472,Chd2,Chd2_fiveUTR,7,73541472,73541521,73541472,73541473,50,-,CGCCATGGCTTCTAAGCTGGAAAAAACAACGACCTGGGCTCTCAGTACGG,Promoter (<=1kb),7,73426638,73541746,115109,2,Chd2-203,225,Chd2-203;Chd2-201;Chd2-204;Chd2-207;Chd2-208;Chd2-216;Chd2-214,Chd2;Chd2;Chd2;Chd2;Chd2;Chd2;Chd2,0;0;-3851;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,16,244059,ENSMUSG00000078671,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
18469,cg14650619,-0.00000178,0.00000699,-0.255079865,0.79883056,loss,ns,0.0000247,0.0000119,2.078583417,0.038477885,pos,ns,0.014016317,0.003477592,4.030466706,0.0000701,pos,ns,4.154233064,-0.000354886,0.000119594,-2.967423274,0.003236871,neg,ns,0.359284811,Prpf3,Prpf3_Exon,3,95830901,95830950,95830949,95830950,50,-,GCCATGTTCTCTGTAGGACACTGTTTAAACTTCATCTCTCCAAAGCTCCG,"Exon (Prpf3-201/Prpf3, exon 16 of 16)",3,95830124,95855885,25762,2,Prpf3-201,24935,Prpf3-201;Prpf3-202;Prpf3-204;Prpf3-209;Prpf3-207,Prpf3;Prpf3;Prpf3;Prpf3;Prpf3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,6,70767,ENSMUSG00000015748,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17949,cg20384304,0.00000163,0.0000155,0.105055041,0.916400074,gain,ns,0.0000549,0.0000264,2.078210777,0.038512426,pos,ns,0.001306713,0.007737511,0.168880258,0.866000966,pos,ns,0.062481623,-0.000091,0.000266092,-0.341911656,0.732649048,neg,ns,0.645296426,Gapdh-ps16,Gapdh-ps16_Intergenic_upstream,8,92743316,92743365,92743364,92743365,50,+,TGTACTTTCACATATTTTAACATCAAATGAAATGATTGACTACAGAATCG,Distal Intergenic,8,92715747,92716975,1229,2,Gapdh-ps16-201,-26341,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,3,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5397,cg12798053,-0.0000124,0.00000653,-1.901019821,0.058226652,loss,ns,0.0000231,0.0000111,2.078082598,0.038524313,pos,ns,0.012265048,0.003249879,3.774001665,0.000192469,pos,ns,3.715639716,-0.000364546,0.000111763,-3.261775148,0.001230571,neg,ns,0.859101698,Mvb12b,Mvb12b_Intron,2,33788900,33788949,33788900,33788901,50,+,CGTACTCCCGCCTGTCAACGCTATTTTAACTTCAAATACTGAAGAACGCC,"Intron (Mvb12b-201/Mvb12b, intron 7 of 9)",2,33729953,33887946,157994,2,Mvb12b-201,98997,Mvb12b-201;Mvb12b-205;Mvb12b-204,Mvb12b;Mvb12b;Mvb12b,0;-141;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,28,47,72543,ENSMUSG00000038740,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5920,cg26679498,0.0000314,0.00000789,3.975765684,0.0000873,gain,ns,0.0000278,0.0000134,2.077954318,0.038536213,pos,ns,0.0000583,0.003925175,0.014858928,0.988154285,pos,ns,0.005175242,0.000156876,0.000134986,1.162159171,0.246064753,pos,ns,0.554988061,Adcy5,Adcy5_Exon,16,35253203,35253252,35253203,35253204,50,+,CGCCAAGCAGGAGGATATGATGTTCCATAAGATTTACATCCAGAAACATG,"Exon (Adcy5-201/Adcy5, exon 3 of 21)",16,35154877,35305738,150862,1,Adcy5-201,98326,Adcy5-201,Adcy5,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,4,224129,ENSMUSG00000022840,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13904,cg13943551,0.000116953,0.00000773,15.13925107,3.80E-39,gain,yes,-0.0000273,0.0000131,-2.077910621,0.038540267,neg,ns,0.003507987,0.003844881,0.912378671,0.362278392,pos,ns,0.440957568,0.0000867,0.000132225,0.655668546,0.51252371,pos,ns,0.277742601,Sp9,Sp9_Intron,2,73279882,73279931,73279882,73279883,50,+,CGCAAAGTCCTTGTCCATTTCCCAGTACAAAGTAGGTTGCTAGAAAATTT,"Intron (Sp9-202/Sp9, intron 1 of 2)",2,73271966,73284706,12741,1,Sp9-202,7916,Cir1-201;Sp9-201;Sp9-202,Cir1;Sp9;Sp9,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,21,381373,ENSMUSG00000068859,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
25110,cg19951436,0.00000899,0.0000152,0.592388938,0.554022006,gain,ns,-0.0000536,0.0000258,-2.077652893,0.038564187,neg,ns,0.017324081,0.007555131,2.293021868,0.02251598,pos,ns,1.647509154,-0.000506865,0.00025982,-1.950826951,0.051978367,neg,ns,0.17602025,Ahdc1,Ahdc1_Intron,4,133013335,133013384,133013383,133013384,50,+,GATGTGGGCCTTGCTGGCCGGAGGCGGGAGCTGGGGCTGTCCCTGAGGCG,"Intron (Ahdc1-210/Ahdc1, intron 2 of 3)",4,133011260,133060820,49561,1,Ahdc1-210,2075,Ahdc1-210;Ahdc1-203;Ahdc1-204;Ahdc1-205;Ahdc1-207;Ahdc1-211;Ahdc1-209;Ahdc1-206;Ahdc1-201,Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,35,49,230793,ENSMUSG00000037692,conserved gene and region,4,133013353,133013449,97,*,97,8,0.701030928,0.766798419,0.082474227,0.00000927,CpGisland,TRUE,NA,NRS
23493,cg21800177,0.00000526,0.00000382,1.377905645,0.169226229,gain,ns,-0.0000135,0.00000649,-2.077271469,0.03859961,neg,ns,-0.003006458,0.001900253,-1.582135899,0.114638225,neg,ns,0.940670548,0.000110532,0.0000653,1.691398955,0.091765608,pos,ns,0.910434973,Gm9267,Gm9267_Intergenic_downstream,12,118659412,118659461,118659412,118659413,50,+,CGTCAGTCAATTATCTTCACAAATGCCTCTTGTGCTAATGAGCACTCACA,Distal Intergenic,12,118602677,118603080,404,1,Gm9267-201,56735,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,20,668611,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5082,cg19626073,-0.000044,0.0000529,-0.832185396,0.405944909,loss,ns,-0.000186716,0.0000899,-2.077264893,0.038600221,neg,ns,-0.029435193,0.02633335,-1.117791415,0.264521592,neg,ns,0.577538872,0.000529052,0.000905602,0.584199337,0.559511078,pos,ns,0.811613848,Rhbdf1,Rhbdf1_Exon,11,32215052,32215101,32215052,32215053,50,+,CGGATGCTCTTGCGCTGCCATTTCTGGGTGCTGTCACTGTCCTTGCTCAC,"Exon (Rhbdf1-201/Rhbdf1, exon 4 of 18)",11,32209585,32222300,12716,2,Rhbdf1-201,7199,Rhbdf1-201;Rhbdf1-205;Rhbdf1-208;Rhbdf1-206;Rhbdf1-204;Rhbdf1-203;Rhbdf1-202;Rhbdf1-209;Rhbdf1-207,Rhbdf1;Rhbdf1;Rhbdf1;Rhbdf1;Rhbdf1;Rhbdf1;Rhbdf1;Rhbdf1;Rhbdf1,0;0;0;0;0;0;0;0;7158,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,13650,ENSMUSG00000020282,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19081,cg11634198,0.0000917,0.00000708,12.93753619,6.58E-31,gain,yes,-0.000025,0.000012,-2.077203928,0.038605885,neg,ns,0.007196182,0.003525807,2.041002683,0.042097244,pos,ns,1.375746337,0.000123369,0.000121252,1.017460703,0.309727727,pos,ns,0.386073856,Neurod2,Neurod2_fiveUTR,11,98329610,98329659,98329610,98329611,50,+,CGAGTGTGGCATCTCTACCAGGCGGGGTACCAGCCTCTATGCCAGGCCAT,Promoter (<=1kb),11,98325415,98329648,4234,2,Neurod2-201,0,Neurod2-201,Neurod2,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,22,18013,ENSMUSG00000038255,conserved gene and region,11,98329512,98329756,245,*,245,22,0.657142857,0.835658915,0.089795918,5.08E-16,CpGisland,TRUE,U13,Hc-P
24946,cg18063694.2,-0.0000257,0.00000546,-4.712482009,0.0000037,loss,ns,0.0000193,0.00000927,2.076645104,0.038657841,pos,ns,-0.002533349,0.002715811,-0.932814884,0.351641504,neg,ns,0.453899871,0.0000362,0.0000934,0.388127979,0.698187721,pos,ns,0.903527065,Hcrtr1,Hcrtr1_Exon,4,130135818,130135867,130135866,130135867,50,+,TGCTCTTGAACAATAGTGGGTGGCAGATGGCATACCAGCGGTCCAGGGCG,"Exon (Hcrtr1-203/Hcrtr1, exon 5 of 9)",4,130130217,130138551,8335,2,Hcrtr1-203,2684,Hcrtr1-203;Hcrtr1-201;Hcrtr1-202;Hcrtr1-204,Hcrtr1;Hcrtr1;Hcrtr1;Hcrtr1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,230777,ENSMUSG00000028778,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3736,cg15211731,0.0000296,0.00000373,7.92790916,4.06E-14,gain,yes,-0.0000132,0.00000634,-2.076557746,0.038665968,neg,ns,-0.000363802,0.001857032,-0.195904814,0.844813022,neg,ns,0.073239401,0.000164242,0.0000639,2.571781289,0.010583405,pos,ns,0.066685491,Pou2f2,Pou2f2_Promoter,7,25179912,25179961,25179912,25179913,50,-,CGCCATCCCCGGCTCCCACCTTGTCCCCATGGCAACCCCGGGCCCAAGGA,Promoter (<=1kb),7,25120618,25179726,59109,2,Pou2f2-208,-235,Pou2f2-208,Pou2f2,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,11,29,18987,ENSMUSG00000008496,conserved gene but different region,7,25179573,25180057,485,*,485,61,0.771134021,0.853947179,0.125773196,3.02E-53,CpGisland,TRUE,U3,Pr-B
2564,cg16266820,0.00000333,0.00000425,0.783930086,0.433679696,gain,ns,-0.000015,0.00000722,-2.076537664,0.038667836,neg,ns,-0.007835635,0.002113966,-3.706604741,0.000248745,neg,ns,3.604246104,0.00012184,0.0000727,1.67594369,0.094757438,pos,ns,0.882047684,Usp54,Usp54_Exon,14,20564955,20565004,20564955,20564956,50,+,CGATCCTGCAGGCTCCGTGCTTTTCGAATACTGATTTGCAACTTCTTATC,"Exon (1810062O18Rik-203/1810062O18Rik-203, exon 3 of 3)",14,20548912,20618354,69443,2,Usp54-202,53350,Usp54-202;Usp54-201,Usp54;Usp54,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,9,78787,ENSMUSG00000034235,mapped to different genes,14,20564798,20565024,227,*,227,12,0.568281938,0.656702025,0.052863436,0.00000219,CpGisland,TRUE,NA,NRS
15519,cg01922679,0.0000666,0.0000138,4.825406177,0.0000022,gain,ns,-0.0000487,0.0000234,-2.076451028,0.038675898,neg,ns,0.000151218,0.006866572,0.02202231,0.982444327,pos,ns,0.007692051,0.0000975,0.000236141,0.412937569,0.679937819,pos,ns,0.5122747,Adgrv1,Adgrv1_Exon,13,81523553,81523602,81523553,81523554,50,-,CGTCGTCAGCCAGGACCTCTAACAACAAGGTTTGAATGGTTTCCCCAGGG,"Exon (Adgrv1-201/Adgrv1, exon 31 of 90)",13,81095068,81633154,538087,2,Adgrv1-201,109552,Adgrv1-201;Adgrv1-202;Adgrv1-208;Adgrv1-212,Adgrv1;Adgrv1;Adgrv1;Adgrv1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,5,110789,ENSMUSG00000069170,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
766,cg25539759,-0.00000193,0.0000028,-0.688582086,0.491601279,loss,ns,-0.00000986,0.00000475,-2.076167425,0.038702299,neg,ns,-0.001685894,0.001391433,-1.211623924,0.226579115,neg,ns,0.644780123,0.0000872,0.0000479,1.822052048,0.06941052,pos,ns,0.933808549,Arglu1,Arglu1_Exon,8,8683776,8683825,8683824,8683825,50,+,GCTTGTCTCTGTCGCTCGAGTTCTTCGAGCAACTGCTTTTCCATGATGCG,"Exon (Arglu1-201/Arglu1, exon 2 of 4)",8,8665075,8690521,25447,2,Arglu1-201,6696,Arglu1-201;Arglu1-204;Arglu1-203;Arglu1-202,Arglu1;Arglu1;Arglu1;Arglu1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,7,234023,ENSMUSG00000040459,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20657,cg16491260,0.0000114,0.00000558,2.04796767,0.041405395,gain,ns,0.0000197,0.00000949,2.076005767,0.038717355,pos,ns,0.018196226,0.002778865,6.548077345,2.42E-10,pos,ns,9.616552194,-0.000361539,0.0000956,-3.783177211,0.00018581,neg,ns,0.889018117,Adamts6,Adamts6_threeUTR,13,104369656,104369705,104369704,104369705,50,-,TTCTTAAACTCGGTGATTCAATAAGTGGTTCATGAATCGCCCAGAAGCCG,3' UTR,13,104287835,104496695,208861,1,Adamts6-207,81821,Adamts6-207;Adamts6-202;Adamts6-201;Adamts6-206;Adamts6-203;Adamts6-204;Adamts6-205,Adamts6;Adamts6;Adamts6;Adamts6;Adamts6;Adamts6;Adamts6,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,19,31,108154,ENSMUSG00000046169,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5735,cg27275508,-0.000017,0.00000738,-2.303328681,0.021921924,loss,ns,0.000026,0.0000125,2.075822155,0.038734461,pos,ns,-0.003102545,0.00367111,-0.845124434,0.398693156,neg,ns,0.39936122,0.000189068,0.000126249,1.497577043,0.135260673,pos,ns,0.165136451,Sox2,Sox2_Promoter,3,34646147,34646196,34646147,34646148,50,-,CGGGGAGATAAAACTCTCATAGCCCTAACTGTCAAATAGGGCCCTTTTCA,Promoter (4-5kb),3,34650405,34652461,2057,1,Sox2-201,-4258,Sox2-201,Sox2,0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,7,62,20674,ENSMUSG00000074637,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
10312,cg26771379,-0.0000465,0.0000125,-3.720676974,0.000235846,loss,ns,0.0000441,0.0000212,2.075527751,0.038761903,pos,ns,0.02485892,0.006220112,3.996538673,0.0000804,pos,ns,4.094881184,-0.000807933,0.000213909,-3.776992383,0.000190274,neg,ns,0.759708799,Med30,Med30_Intergenic_downstream,15,52805997,52806046,52805997,52805998,50,-,CGTCAGTAGATGTCATGTAACTCCATAGTTTCTCTGACCCTGATGGATTT,Distal Intergenic,15,52712442,52730564,18123,1,Med30-201,93604,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,69790,ENSMUSG00000038622,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24014,cg26786582,0.0000157,0.00000596,2.634511452,0.008849,gain,ns,0.000021,0.0000101,2.075258262,0.038787037,pos,ns,0.001939791,0.002968669,0.653421204,0.51396912,pos,ns,0.289062973,-0.0000211,0.000102092,-0.206280962,0.83670686,neg,ns,0.079824757,Cux2,Cux2_Intron,5,121948350,121948399,121948398,121948399,50,-,TAAAAATAATCAGACATTCTGTGCACCACTGTTTGTTATAACGGTAATCG,"Intron (Cux2-202/Cux2, intron 2 of 22)",5,121856366,122049851,193486,2,Cux2-202,101452,Cux2-202;Cux2-201;Cux2-207;Cux2-205;Cux2-203,Cux2;Cux2;Cux2;Cux2;Cux2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,21,13048,ENSMUSG00000042589,conserved gene and region,5,121948371,121948694,324,*,324,26,0.552469136,1.057228916,0.080246914,1.44E-17,CpGisland,TRUE,NA,NRS
680,cg00789527,-0.00000356,0.00000362,-0.983447185,0.32615431,loss,ns,0.0000127,0.00000614,2.075255907,0.038787257,pos,ns,0.004139425,0.001799684,2.300083814,0.022107453,pos,ns,1.65546128,-0.000135363,0.0000619,-2.187115859,0.029480982,neg,ns,0.925114098,Wac,Wac_Exon,18,7910711,7910760,7910711,7910712,50,-,CGCTACAGTCTGATCACCAGCCAAAGAAATCATTTGATGCTAATGGAGCA,"Exon (Wac-201/Wac, exon 7 of 14)",18,7868832,7926505,57674,1,Wac-214,41879,Wac-214;Wac-201;Wac-215;Wac-207;Wac-202;Wac-216;Wac-210;Wac-205;Wac-204;Wac-212;Wac-208;Wac-209,Wac;Wac;Wac;Wac;Wac;Wac;Wac;Wac;Wac;Wac;Wac;Wac,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,225131,ENSMUSG00000024283,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1136,cg05308779,-0.00000206,0.00000279,-0.736962031,0.461702817,loss,ns,0.00000984,0.00000474,2.075226324,0.038790017,pos,ns,0.002029657,0.00138952,1.460689466,0.145113443,pos,ns,0.838292354,-0.0000606,0.0000478,-1.267198809,0.206035333,neg,ns,0.939794977,Ikzf1,Ikzf1_threeUTR,11,11761323,11761372,11761323,11761324,50,+,CGTAAGAGCTCTATGCCTCAGAAATTTCTTGGTAAGAGTTAAATGTTTGC,3' UTR,11,11685925,11772112,86188,1,Ikzf1-203,75398,Ikzf1-203;Ikzf1-204;Ikzf1-202;Ikzf1-201,Ikzf1;Ikzf1;Ikzf1;Ikzf1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,15,22778,ENSMUSG00000018654,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26644,cg12046720,0.0000852,0.0000143,5.947938407,7.32E-09,gain,yes,-0.0000505,0.0000243,-2.075213697,0.038791195,neg,ns,0.034236444,0.007132959,4.799753048,0.00000247,pos,ns,5.606517195,-0.00120042,0.000245302,-4.893642772,0.00000159,neg,yes,0.482542097,Pex14,Pex14_Intron,4,149062047,149062096,149062095,149062096,50,-,GGCCCCTTTCCCTTTCCCAGTCAATATAGCAGCCAGTGAAAATAGAAACG,"Intron (Pex14-201/Pex14, intron 2 of 8)",4,148960535,149099876,139342,2,Pex14-201,37780,Pex14-201;Pex14-202;Pex14-205;Pex14-203;Pex14-204,Pex14;Pex14;Pex14;Pex14;Pex14,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,41,48,56273,ENSMUSG00000028975,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18859,cg19958240,-0.0000048,0.00000174,-2.754553522,0.00622448,loss,ns,0.00000614,0.00000296,2.075114309,0.038800469,pos,ns,0.000269699,0.00086683,0.311132253,0.755909196,pos,ns,0.121530371,0.0000375,0.0000298,1.259053638,0.208958198,pos,ns,0.064061441,Pip4k2b,Pip4k2b_Exon,11,97744512,97744561,97744560,97744561,50,+,CTGGCACACGAAATGCTTCTTCTTGGTCTTGGTCTTGCTGGCGCTGAGCG,Promoter (<=1kb),11,97715157,97744704,29548,2,Pip4k2b-201,143,Cwc25-203;Cwc25-201;Cwc25-204;Pip4k2b-201,Cwc25;Cwc25;Cwc25;Pip4k2b,6609;21995;8149;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,108083,ENSMUSG00000018547,conserved gene and region,11,97744124,97745191,1068,*,1068,111,0.699438202,0.850135536,0.103932584,4.53E-86,CpGisland,TRUE,U1,Pr-A
5543,cg05475402,-0.0000108,0.00000532,-2.026547479,0.043564526,loss,ns,0.0000188,0.00000904,2.075102026,0.038801615,pos,ns,0.010911348,0.002648393,4.119987987,0.0000487,pos,ns,4.312770389,-0.00031569,0.0000911,-3.466152807,0.000602475,neg,ns,0.822447982,Pbx3,Pbx3_Intron,2,34229562,34229611,34229562,34229563,50,-,CGTTTTTCATGTCAGGTATATTAAATATAACACGGCAATGCACTGCACAT,"Intron (Pbx3-202/Pbx3, intron 2 of 7)",2,34171457,34372038,200582,2,Pbx3-202,142427,Pbx3-202;Pbx3-201;Pbx3-210;Pbx3-206;Pbx3-207;Pbx3-209;Pbx3-204;Pbx3-205;Pbx3-203,Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,82,18516,ENSMUSG00000038718,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7709,cg11684660,0.00000533,0.00000612,0.871204049,0.384316925,gain,ns,0.0000216,0.0000104,2.074978013,0.03881319,pos,ns,0.006454233,0.003046348,2.118678704,0.03491275,pos,ns,1.457015939,-0.000279357,0.000104764,-2.666546868,0.008065632,neg,ns,0.807494976,Adra1b,Adra1b_Exon,11,43835929,43835978,43835929,43835930,50,+,CGCCCAGCACCAGGCCCACAGAGATGGCCCTGGTGATGTCCAGCTGGGGC,Promoter (<=1kb),11,43774606,43836332,61727,2,Adra1b-202,354,Adra1b-202;Adra1b-204;Adra1b-201;Adra1b-203,Adra1b;Adra1b;Adra1b;Adra1b,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,5,11548,ENSMUSG00000050541,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
16086,cg23492829,0.00000436,0.00000181,2.41063277,0.016506589,gain,ns,0.00000637,0.00000307,2.074675341,0.038841452,pos,ns,0.002779726,0.000899527,3.090209393,0.002181549,pos,ns,2.661234974,-0.0000246,0.0000309,-0.796181648,0.426535737,neg,ns,0.949500127,Zfp407,Zfp407_Intron,18,84372367,84372416,84372367,84372368,50,-,CGAGTGCCTTCTTTGAATTAGAAAAACTGTATCATTTAGCCCACGGTTGT,"Intron (Zfp407-201/Zfp407, intron 2 of 2)",18,84128027,84558425,430399,2,Zfp407-201,186009,Zfp407-201;Zfp407-202;Zfp407-203,Zfp407;Zfp407;Zfp407,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,32,240476,ENSMUSG00000048410,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14204,cg05008190,-0.00000448,0.00000259,-1.73045156,0.084544785,loss,ns,0.00000913,0.0000044,2.074358238,0.03887108,pos,ns,0.003196649,0.001289887,2.478239158,0.013735402,pos,ns,1.862158611,-0.0000648,0.0000444,-1.461594814,0.144865182,neg,ns,0.076278312,Mnt,Mnt_Promoter,11,74830320,74830369,74830320,74830321,50,+,CGGGGTGTCCATGTGGAGCTGCTCCATGCCGTGTTGTCCTGCCCGCCCAT,Promoter (<=1kb),11,74830920,74845725,14806,1,Mnt-201,-551,Mettl16-205;Mnt-201,Mettl16;Mnt,59490;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,17,17428,ENSMUSG00000000282,conserved gene and region,11,74830213,74830575,363,*,363,30,0.633608815,0.824001211,0.082644628,1.43E-20,CpGisland,TRUE,U1,Pr-A
20738,cg16461320,-0.00000382,0.00000165,-2.312276164,0.021417373,loss,ns,-0.00000583,0.00000281,-2.074174974,0.038888212,neg,ns,-0.000718941,0.000822815,-0.8737579,0.382926467,neg,ns,0.416884615,-0.00000247,0.0000283,-0.087178369,0.930586018,neg,ns,0.94787548,Mov10,Mov10_threeUTR,3,104801077,104801126,104801077,104801078,50,+,CGGTTGAAGGTAAAGTTCACCTTGAAGGTCAGCCCATCCACAAAGCGGCT,3' UTR,3,104794836,104818242,23407,2,Mov10-201,17116,Mov10-201;Mov10-207;Mov10-202;Mov10-203;Mov10-206;Mov10-208;Mov10-204;Mov10-209;Mov10-205,Mov10;Mov10;Mov10;Mov10;Mov10;Mov10;Mov10;Mov10;Mov10,0;0;0;0;0;16228;17437;16990;17175,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,17454,ENSMUSG00000002227,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27955,cg20415161,0.0000177,0.00000863,2.050505816,0.041155692,gain,ns,-0.0000304,0.0000147,-2.074157626,0.038889834,neg,ns,0.006869324,0.004293857,1.599802624,0.110660992,pos,ns,0.956005442,-0.000699428,0.000147665,-4.736575704,0.00000331,neg,ns,0.324010959,Sertad4,Sertad4_Intron,1,192851750,192851799,192851750,192851751,50,+,CGGCCTGAACTGGATCTGCCTCCAGTCAAAACACTGCGAGATGAAGACAG,"Intron (Sertad4-204/Sertad4, intron 1 of 3)",1,192844488,192855756,11269,2,Sertad4-204,3957,Sertad4-204;Sertad4-201;Sertad4-203;Sertad4-202,Sertad4;Sertad4;Sertad4;Sertad4,0;0;0;3687,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,3,214791,ENSMUSG00000016262,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
9502,cg22944122,-0.00000451,0.00000147,-3.075112148,0.002291565,loss,ns,0.00000517,0.00000249,2.073796707,0.038923593,pos,ns,0.001959434,0.000729841,2.684739201,0.007649086,pos,ns,2.116390485,-0.0000435,0.0000251,-1.732654796,0.084151578,neg,ns,0.042908538,Mbd5,Mbd5_fiveUTR,2,48950209,48950258,48950257,48950258,50,-,TCTGGCTCTGACTTTCACTCCGGGGCAACAGTAGCACCAAACCACATACG,Promoter (<=1kb),2,48949508,49260558,311051,1,Mbd5-202,701,Mbd5-202;Mbd5-211;Mbd5-203;Mbd5-207;Mbd5-210;Mbd5-205;Mbd5-209;Mbd5-208;Orc4-201;Orc4-212;Orc4-207;Orc4-208;Orc4-202;Orc4-205;Orc4-209;Orc4-203,Mbd5;Mbd5;Mbd5;Mbd5;Mbd5;Mbd5;Mbd5;Mbd5;Orc4;Orc4;Orc4;Orc4;Orc4;Orc4;Orc4;Orc4,0;0;0;0;0;0;0;0;-933;-978;-975;-170;-975;-977;-968;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,10,109241,ENSMUSG00000036792,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
16757,cg14434028,-0.00000268,0.0000044,-0.60864589,0.5432049,loss,ns,0.0000155,0.00000748,2.073773093,0.038925803,pos,ns,0.003920643,0.002191103,1.78934729,0.074535001,pos,ns,1.127639736,-0.0000991,0.0000754,-1.315765841,0.189224852,neg,ns,0.92328423,Tia1,Tia1_threeUTR,6,86423629,86423678,86423677,86423678,50,-,ATTGCCCTGGCTAACTACAAGCTACGGTTCACAGTGGATAAATGTTGGCG,3' UTR,6,86404219,86431201,26983,1,Tia1-203,19410,Gm44790-201;Tia1-203;Tia1-202;Tia1-214;Tia1-218;Tia1-212;Tia1-201;Tia1-211;Tia1-221;Tia1-223;Tia1-205;Tia1-216;Tia1-206;Tia1-219;Tia1-204;Tia1-213;Tia1-217;Tia1-209;Tia1-226;Tia1-207;Tia1-210;Tia1-225;Tia1-228;Tia1-220;Tia1-208,Gm44790;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1,-2980;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;-1798,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,TRUE,FALSE,threeUTR,5,7,21841,ENSMUSG00000071337,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21750,cg18724014,0.00000599,0.0000112,0.533048025,0.594382256,gain,ns,-0.0000396,0.0000191,-2.073377203,0.038962864,neg,ns,-0.005405343,0.005596959,-0.965764213,0.334914978,neg,ns,0.47506543,-0.000138515,0.000192479,-0.719635218,0.472291798,neg,ns,0.812176001,Zfhx3,Zfhx3_Exon,8,108956600,108956649,108956600,108956601,50,+,CGCTCTGTGGGGAGGAAGCTCTGAGTCAACATCTCGAGTCGGCCTTGCAC,"Exon (Zfhx3-204/Zfhx3, exon 16 of 16)",8,107942644,108961630,1018987,1,Zfhx3-204,1013956,Zfhx3-204;Zfhx3-201,Zfhx3;Zfhx3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,46,177,11906,ENSMUSG00000038872,conserved gene and region,8,108956520,108956683,164,*,164,19,0.670731707,1.073002755,0.115853659,4.34E-16,CpGisland,TRUE,NA,NRS
13126,cg26135304,-0.00000743,0.00000305,-2.438062466,0.015327707,loss,ns,-0.0000107,0.00000518,-2.073214334,0.038978119,neg,ns,-0.002765181,0.00151745,-1.822255786,0.069379531,neg,ns,1.15876864,-0.00000354,0.0000522,-0.067930071,0.945885094,neg,ns,0.922911692,Ikzf2,Ikzf2_Exon,1,69538817,69538866,69538817,69538818,50,-,CGGTCCTGGCTTCTGTAGCCACAGATGTTGCATTCCAGTGGGTCCCGGTA,"Exon (Ikzf2-201/Ikzf2, exon 8 of 8)",1,69531214,69685821,154608,2,Ikzf2-201,146955,Ikzf2-201;Ikzf2-207;Ikzf2-202;Ikzf2-204;Ikzf2-208;Ikzf2-209,Ikzf2;Ikzf2;Ikzf2;Ikzf2;Ikzf2;Ikzf2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,14,22779,ENSMUSG00000025997,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1323,cg26073458,0.0000171,0.00000498,3.427253938,0.000692049,gain,ns,-0.0000175,0.00000846,-2.073086528,0.038990094,neg,ns,0.003516284,0.002477382,1.419355025,0.156800264,pos,ns,0.804653211,-0.000126349,0.0000852,-1.483021017,0.139084731,neg,ns,0.015785024,Fezf2,Fezf2_fiveUTR,14,12345702,12345751,12345750,12345751,50,+,CTGACATCACATGAAGTCACTTGAAGTGGAATGACATGGGCGGCGGCGCG,Promoter (<=1kb),14,12342094,12345844,3751,2,Fezf2-203,93,Fezf2-203;Fezf2-201;Fezf2-202,Fezf2;Fezf2;Fezf2,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,13,45,54713,ENSMUSG00000021743,conserved gene and region,14,12345742,12345947,206,*,206,23,0.679611651,1.001479603,0.111650485,5.22E-19,CpGisland,TRUE,U13,Hc-P
3947,cg06939405,0.0000146,0.00000541,2.709134998,0.007120927,gain,ns,0.000019,0.00000918,2.072635854,0.039032346,pos,ns,0.007785308,0.002690271,2.893874794,0.004074968,pos,ns,2.38987585,-0.000224172,0.0000925,-2.423002728,0.015965386,neg,ns,0.900221915,5730522E02Rik,5730522E02Rik_Intron,11,25857523,25857572,25857571,25857572,50,-,TTACAGATTATGCATGAAATGTTCACATTATCTGTTACTTTTTGTTAACG,"Intron (5730522E02Rik-202/5730522E02Rik, intron 2 of 5)",11,25617668,26210569,592902,2,5730522E02Rik-202,352997,5730522E02Rik-202;5730522E02Rik-201;5730522E02Rik-204,5730522E02Rik;5730522E02Rik;5730522E02Rik,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,90,70626,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13283,cg14189107,0.0000414,0.00000778,5.315880939,0.000000203,gain,yes,-0.0000274,0.0000132,-2.072078391,0.039084663,neg,ns,-0.00227728,0.003872604,-0.588048671,0.556927765,neg,ns,0.25420113,0.0000284,0.000133179,0.213204143,0.831307878,pos,ns,0.583660605,Pebp4,Pebp4_Intron,14,69994934,69994983,69994934,69994935,50,-,CGCCCAGGCCTTGGATCATTTGAAAGGCAAATGTGCTGGGTTGCCTAGGG,"Intron (Pebp4-201/Pebp4, intron 4 of 6)",14,69840420,70059918,219499,1,Pebp4-201,154514,Pebp4-201,Pebp4,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,14,14,73523,ENSMUSG00000022085,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9272,cg18818686,-0.00000713,0.00000553,-1.290472331,0.197848384,loss,ns,-0.0000195,0.00000939,-2.072049464,0.039087379,neg,ns,-0.005597648,0.002751647,-2.034290226,0.042773285,neg,ns,1.368827393,0.0000896,0.0000946,0.947111776,0.344319506,pos,ns,0.848222329,Foxp4,Foxp4_Intron,17,47872654,47872703,47872654,47872655,50,+,CGTGATGAGAGACTAATTCGTTACGCTGAAACATTAACGGCAATTTAAGG,"Intron (Foxp4-204/Foxp4, intron 13 of 16)",17,47867133,47924645,57513,2,Foxp4-204,51942,Foxp4-204;Foxp4-203;Foxp4-201;Foxp4-202,Foxp4;Foxp4;Foxp4;Foxp4,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,25,74123,ENSMUSG00000023991,conserved gene and region,17,47872440,47872721,282,*,282,26,0.563829787,1.163809524,0.092198582,3.73E-19,CpGisland,TRUE,U10,Tr-S
5892,cg18020072,0.0000658,0.0000124,5.315475689,0.000000204,gain,yes,-0.0000436,0.000021,-2.071433948,0.039145218,neg,ns,0.017631334,0.00616212,2.861244644,0.004506644,pos,ns,2.346146722,-0.00059861,0.000211915,-2.824767968,0.005038186,neg,ns,0.205564726,Prrc2a,Prrc2a_fiveUTR,17,35162861,35162910,35162909,35162910,50,+,AGGACTCTCACCAGCGGGTTTCTGGATCTCTAAGGACTTGCCCTTATACG,5' UTR,17,35149076,35164897,15822,2,Prrc2a-201,1987,Prrc2a-201;Prrc2a-206;Prrc2a-203,Prrc2a;Prrc2a;Prrc2a,0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,13,53761,ENSMUSG00000024393,conserved gene but different region,17,35162847,35163042,196,*,196,12,0.556122449,0.8,0.06122449,0.000000472,CpGisland,TRUE,NA,NRS
4620,cg03646571,-0.000036,0.0000098,-3.669650854,0.000285854,loss,ns,-0.0000345,0.0000166,-2.071045,0.039181804,neg,ns,-0.003055183,0.004876741,-0.626480527,0.53146085,neg,ns,0.274528723,-0.000265386,0.000167711,-1.582404318,0.114576962,neg,ns,0.755395583,Mecom,Mecom_threeUTR,3,29980728,29980777,29980728,29980729,50,-,CGTTTTATCCATAGCTGGGGTTCCAGGAAGTGAAATGCCTTGGCCAAAAA,3' UTR,3,29951296,30013156,61861,2,Mecom-206,32379,Mecom-206;Mecom-212;Mecom-202;Mecom-203;Mecom-210;Mecom-215;Mecom-204;Mecom-213;Mecom-207;Mecom-208;Mecom-205;Mecom-216,Mecom;Mecom;Mecom;Mecom;Mecom;Mecom;Mecom;Mecom;Mecom;Mecom;Mecom;Mecom,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,10,80,14013,ENSMUSG00000027684,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7666,cg05601676,0.0000477,0.00000562,8.48752018,8.85E-16,gain,yes,-0.0000198,0.00000954,-2.070919188,0.039193644,neg,ns,0.005790964,0.002794831,2.072026454,0.03908954,pos,ns,1.407939437,-0.000101271,0.0000961,-1.053658497,0.292859843,neg,ns,0.112713681,Nkx2-3,Nkx2-3_Intergenic_downstream,19,43616700,43616749,43616700,43616701,50,-,CGAGCTCCCCATTGCTTCTCAGAGCGGGGGCTTTGTGCAGCAGTCTGCTC,Downstream (<1kb),19,43612325,43615892,3568,1,Nkx2-3-201,4424,Nkx2-3-201,Nkx2-3,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,5,6,18089,ENSMUSG00000044220,conserved gene and region,19,43616270,43616905,636,*,636,57,0.682389937,0.781074268,0.089622642,1.32E-40,CpGisland,TRUE,U13,Hc-P
764,cg25910416,-0.00000124,0.00000498,-0.250092329,0.802681602,loss,ns,-0.0000175,0.00000845,-2.070883527,0.039197001,neg,ns,-0.005168465,0.002476329,-2.08714805,0.037691274,neg,ns,1.423759177,0.000163232,0.0000852,1.916755138,0.056188196,pos,ns,0.925117779,Arglu1,Arglu1_Exon,8,8683694,8683743,8683742,8683743,50,-,ACACTGAAAGTTTTGCCATGGACTGTCTCTACTTTCCAAACGACCGAGCG,"Exon (Arglu1-204/Arglu1, exon 2 of 3)",8,8665075,8690521,25447,2,Arglu1-201,6778,Arglu1-201;Arglu1-204;Arglu1-203;Arglu1-202,Arglu1;Arglu1;Arglu1;Arglu1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,7,234023,ENSMUSG00000040459,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3582,cg20778365,-0.00000946,0.00000688,-1.373384507,0.170625288,loss,ns,-0.0000242,0.0000117,-2.070871016,0.039198179,neg,ns,-0.00466619,0.003426484,-1.36180116,0.174249449,neg,ns,0.758828587,0.000190251,0.000117836,1.614536146,0.10742852,pos,ns,0.123913527,Smarcd3,Smarcd3_Exon,5,24601779,24601828,24601827,24601828,50,-,ACCACCCCATGGACCAGAAACTCAAAAAGTTTGCTTTTCGTGGCTTTGCG,Promoter (<=1kb),5,24590818,24601976,11159,2,Smarcd3-205,148,Smarcd3-205;Smarcd3-201;Smarcd3-208;Smarcd3-207;Smarcd3-203;Smarcd3-206;Smarcd3-204;Smarcd3-202,Smarcd3;Smarcd3;Smarcd3;Smarcd3;Smarcd3;Smarcd3;Smarcd3;Smarcd3,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,66993,ENSMUSG00000028949,conserved gene and region,5,24601817,24601874,58,*,58,9,0.74137931,1.12987013,0.155172414,6.08E-09,CpGisland,TRUE,U3,Pr-B
23582,cg07350767,-0.000000457,0.000000768,-0.595402077,0.552009138,loss,ns,0.0000027,0.0000013,2.070796781,0.039205168,pos,ns,0.001412298,0.000382156,3.695609672,0.000259282,pos,ns,3.586226986,-0.0000405,0.0000131,-3.07915903,0.002261584,neg,ns,0.026112225,Cbx4,Cbx4_Promoter,11,119085399,119085448,119085399,119085400,50,+,CGTTCGGTGGAGGGAAAGGGGAAAGGAGCCATTTTCTGCTGCACATCAGT,Promoter (<=1kb),11,119077573,119086221,8649,2,Cbx4-201,773,Cbx4-201;Cbx4-202,Cbx4;Cbx4,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,2,2,12418,ENSMUSG00000039989,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
11475,cg15447133,-0.00000183,0.00000249,-0.737149618,0.46158891,loss,ns,0.00000875,0.00000423,2.070445521,0.03923825,pos,ns,0.00351336,0.001238226,2.837415247,0.004847759,pos,ns,2.314459012,-0.0000637,0.0000426,-1.495614816,0.135771364,neg,ns,0.949062841,Tsc22d2,Tsc22d2_Exon,3,58428206,58428255,58428254,58428255,50,+,ATTTGATTCTCGGATCTCACAGGAATCCTTCAACTGCTTTCTACCAAGCG,"Exon (Tsc22d2-201/Tsc22d2, exon 2 of 4)",3,58414715,58466783,52069,1,Tsc22d2-201,13491,Tsc22d2-201;Tsc22d2-203;Tsc22d2-202,Tsc22d2;Tsc22d2;Tsc22d2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,7,72033,ENSMUSG00000027806,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
359,cg25377280,-0.00000316,0.00000131,-2.411186506,0.01648202,loss,ns,0.00000461,0.00000223,2.070290133,0.039252893,pos,ns,0.00194282,0.000652317,2.978339381,0.003126903,pos,ns,2.504885613,-0.0000623,0.0000224,-2.775413047,0.005848058,neg,ns,0.968454072,Klhl29,Klhl29_Intron,12,5239901,5239950,5239949,5239950,50,+,GCGGGTTGTGCAGTGTGAACAATTCACTTTCGTTAAGTACCATATGGCCG,"Intron (Klhl29-201/Klhl29, intron 2 of 13)",12,5077472,5375682,298211,2,Klhl29-201,135732,Klhl29-201;Klhl29-202,Klhl29;Klhl29,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,23,208439,ENSMUSG00000020627,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
34,cg10247647,-0.00000257,0.00000187,-1.377639786,0.169308258,loss,ns,0.00000656,0.00000317,2.070112243,0.039269662,pos,ns,0.000366186,0.000928326,0.394458481,0.693513806,pos,ns,0.158944889,-0.00001,0.0000319,-0.313905706,0.753803785,neg,ns,0.047057718,Bambi,Bambi_Exon,18,3508216,3508265,3508216,3508217,50,+,CGCCACTCCAGCTACATCTTCATCTGGCTGCAGCTGGAGCTCTGCGCCAT,Promoter (<=1kb),18,3507923,3516404,8482,1,Bambi-201,293,Bambi-201,Bambi,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,68010,ENSMUSG00000024232,conserved gene and region,18,3507574,3508217,644,*,644,75,0.695652174,0.973790323,0.116459627,1.73E-62,CpGisland,TRUE,U1,Pr-A
17211,cg06815585,0.000000361,0.00000855,0.042173742,0.966387345,gain,ns,0.0000301,0.0000145,2.069973906,0.039282706,pos,ns,0.000717577,0.004254598,0.168659297,0.866174626,pos,ns,0.062394543,-0.0000162,0.000146315,-0.111049477,0.911648975,neg,ns,0.781493553,Nog,Nog_Intergenic_downstream,11,89209535,89209584,89209535,89209536,50,-,CGAGAAATGGAACAGAGGAAATCAGGGAGACAATATGTCTGTGCGACTTG,Distal Intergenic,11,89300638,89302332,1695,2,Nog-201,92797,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,36,18121,ENSMUSG00000048616,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
637,cg14859805,0.0000652,0.0000121,5.370212106,0.000000155,gain,yes,0.0000427,0.0000206,2.069496086,0.03932779,pos,ns,0.026006153,0.006038243,4.306907603,0.0000222,pos,ns,4.652778163,-0.000425659,0.000207655,-2.049839711,0.041221099,neg,ns,0.31231689,Usp27x,Usp27x_Exon,X,7376275,7376324,7376323,7376324,50,-,TATGATCAGGCAAGTTTGGGAAACACAGCTCTAATTCATTGAGGCTGGCG,Promoter (<=1kb),20,7372591,7375830,3240,2,Usp27x-201,-494,Usp27x-202;Usp27x-203;Usp27x-201,Usp27x;Usp27x;Usp27x,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,6,54651,ENSMUSG00000046269,mapped to different genes,X,7376323,7376404,82,*,82,8,0.670731707,0.870026525,0.097560976,0.00000265,CpGisland,TRUE,NA,NRS
17523,cg24322217,0.00000317,0.00000537,0.589434038,0.555999467,gain,ns,0.0000189,0.00000912,2.069313793,0.039345002,pos,ns,0.001485477,0.002672663,0.555804146,0.578745657,pos,ns,0.237512255,-0.0000956,0.0000919,-1.03983333,0.299227662,neg,ns,0.826937264,Nrxn1,Nrxn1_Intron,17,90701570,90701619,90701570,90701571,50,-,CGTAAAGATGAGTGGGTGTGGCATCTCCAGCATTCCCAAATCAAGTTTCC,"Intron (Nrxn1-202/Nrxn1, intron 5 of 20)",17,90033631,91088907,1055277,2,Nrxn1-202,387288,Nrxn1-202;Nrxn1-207;Nrxn1-216;Nrxn1-209;Nrxn1-201;Nrxn1-206;Nrxn1-208;Nrxn1-210;Nrxn1-224;Nrxn1-205;Nrxn1-203,Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,27,18189,ENSMUSG00000024109,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1134,cg19695329,-0.0000031,0.00000129,-2.41340542,0.016383893,loss,ns,0.00000452,0.00000219,2.069123076,0.039363016,pos,ns,0.001073824,0.000640332,1.676981378,0.094554133,pos,ns,1.024319485,-0.0000314,0.000022,-1.424114649,0.155419084,neg,ns,0.972314416,Ikzf1,Ikzf1_Exon,11,11758194,11758243,11758242,11758243,50,-,GTTGGTAAACCTCACAAATGTGGATATTGTGGCCGAAGCTATAAACAGCG,"Exon (Ikzf1-203/Ikzf1, exon 7 of 9)",11,11685925,11772112,86188,1,Ikzf1-203,72269,Ikzf1-205;Ikzf1-203;Ikzf1-204;Ikzf1-202;Ikzf1-201,Ikzf1;Ikzf1;Ikzf1;Ikzf1;Ikzf1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,15,22778,ENSMUSG00000018654,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22534,cg16524811,-0.0000182,0.00000945,-1.927209142,0.054867199,loss,ns,0.0000332,0.0000161,2.068888985,0.039385137,pos,ns,0.010897892,0.004704626,2.31642016,0.021187156,pos,ns,1.67392734,-0.000409675,0.000161792,-2.532111822,0.011831296,neg,ns,0.851737118,Rps4l-ps,Rps4l-ps_Intron,7,114973831,114973880,114973879,114973880,50,-,AATGCTAATTAGTTCTATTTTCTGTACAACATTCACATGCTAAAATCTCG,"Intron (A730082K24Rik-203/A730082K24Rik-203, intron 2 of 3)",7,114926959,114927726,768,2,Rps4l-ps-201,-46154,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,19,627967,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21180,cg14905297,0.000014,0.00000544,2.573773801,0.010523949,gain,ns,0.0000191,0.00000924,2.068838246,0.039389933,pos,ns,0.007016263,0.002708086,2.590856387,0.010026337,pos,ns,1.998857722,-0.000220327,0.0000931,-2.365773762,0.018607465,neg,ns,0.811587424,Grm2,Grm2_Exon,9,106648142,106648191,106648190,106648191,50,+,TAGGTGAAGATGTTGTAGCGGCCAATACCATCACCAAAGCGGTCAAAGCG,"Exon (Grm2-201/Grm2, exon 4 of 6)",9,106643117,106656080,12964,2,Grm2-201,7889,Grm2-202;Grm2-201;Grm2-203;Grm2-204,Grm2;Grm2;Grm2;Grm2,-39;0;0;-1529,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,108068,ENSMUSG00000023192,conserved gene but different region,9,106648115,106648254,140,*,140,12,0.6,0.988235294,0.085714286,1.13E-08,CpGisland,TRUE,U15,NS
24318,cg20039968,0.0000437,0.00000588,7.445536359,9.62E-13,gain,yes,-0.0000206,0.00000998,-2.068625959,0.039410004,neg,ns,-0.001834777,0.002924146,-0.627457321,0.53082139,neg,ns,0.275051585,0.0000504,0.000100561,0.501104318,0.616653336,pos,ns,0.853213308,Pou3f1,Pou3f1_Intron,4,124632969,124633018,124632969,124632970,50,-,CGCTTCAGAGAGAAGGCAGGGGCTGAGTTTCATGGTTAATTCAATGTCAA,"Intron (Gm2164-201/Gm2164-201, intron 1 of 1)",4,124656807,124660655,3849,1,Pou3f1-201,-23838,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,43,85,18991,ENSMUSG00000090125,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7124,cg07343679,-0.00000479,0.00000203,-2.358934579,0.018947611,loss,ns,0.00000713,0.00000345,2.068526226,0.039419437,pos,ns,0.002213224,0.00100971,2.191940797,0.029127224,pos,ns,1.535700911,-0.0000582,0.0000347,-1.677221149,0.094507206,neg,ns,0.948964094,Gm5973,Gm5973_Intergenic_upstream,1,41122045,41122094,41122045,41122046,50,+,CGAAACCGCTGAACTGAGGTTGTAAAGAATTCATTAATATTAAAATTAGC,Distal Intergenic,1,40863737,40864232,496,2,Gm5973-201,-257813,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,18,18,546733,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4014,cg01597940,0.0000195,0.00000826,2.363782269,0.018705953,gain,ns,0.000029,0.000014,2.068371245,0.039434099,pos,ns,0.001965698,0.004109309,0.478352522,0.632736494,pos,ns,0.198777116,-0.0000995,0.000141319,-0.704318192,0.481763391,neg,ns,0.664193229,Gm50479,Gm50479_Exon,8,26438985,26439034,26439033,26439034,50,+,CATCCATGCATCGGTCATTTAACACGGTAACCCAGTGAAATTGATACTCG,"Exon (Gm45580-201/Gm45580-201, exon 1 of 2)",8,26237222,26237407,186,1,Gm50479-201,201763,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,21,,NA,mapped to different genes,8,26438812,26439195,384,*,384,19,0.552083333,0.65026738,0.049479167,2.73E-09,CpGisland,TRUE,U15,NS
6194,cg12112459,0.0000128,0.00000303,4.210139183,0.0000335,gain,ns,-0.0000107,0.00000515,-2.068154162,0.039454643,neg,ns,0.007670541,0.001509411,5.081810235,0.000000647,pos,ns,6.188820289,-0.000180311,0.0000519,-3.473626775,0.000586557,neg,ns,0.085804535,Pura,Pura_Exon,18,36287830,36287879,36287878,36287879,50,+,GACTGTGGACAACAAGCGCTTCTTCTTCGATGTGGGCTCCAACAAGTACG,"Exon (Pura-201/Pura, exon 2 of 2)",18,36281097,36292535,11439,1,Pura-201,6733,Pura-201,Pura,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,13,19,19290,ENSMUSG00000043991,conserved gene and region,18,36286687,36288029,1343,*,1343,129,0.68652271,0.823041768,0.096053611,4.14E-95,CpGisland,TRUE,U4,Pr-F
14663,cg20798091,-0.00000466,0.00000539,-0.864837281,0.387796838,loss,ns,0.0000189,0.00000915,2.068125,0.039457404,pos,ns,0.004051012,0.002681508,1.510721257,0.131878114,pos,ns,0.879827273,-0.00010783,0.0000922,-1.169307579,0.243178026,neg,ns,0.556849726,Epha4,Epha4_Intergenic_downstream,1,77141049,77141098,77141097,77141098,50,+,TTCAAGCACCATTGAACGTGATGCTGTATTAATTGCCCTGGAGGGTAGCG,Distal Intergenic,1,77373613,77377607,3995,2,Epha4-203,236509,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,9,13838,ENSMUSG00000026235,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20139,cg17503373,-0.0000104,0.00000846,-1.226018661,0.221122165,loss,ns,0.0000297,0.0000144,2.067854943,0.039482976,pos,ns,0.005437756,0.004211452,1.291183052,0.197602191,pos,ns,0.704208243,-0.00044249,0.000144831,-3.055206744,0.002444426,neg,ns,0.660023658,Olfr558,Olfr558_Exon,7,102709795,102709844,102709843,102709844,50,+,TCCTACTGCCTACACCAAGATGTCATGAAGCTGGCCTGTGATGATATCCG,"Exon (Olfr558-201/Olfr558, exon 2 of 2)",7,102702215,102712064,9850,1,Olfr558-201,7580,Gm45688-201;Olfr33-202;Olfr33-201;Olfr558-201,Gm45688;Olfr33;Olfr33;Olfr558,1635;9226;4567;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,259097,ENSMUSG00000070423,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24961,cg10423457,-0.00000738,0.0000025,-2.955701247,0.003358891,loss,ns,-0.00000877,0.00000424,-2.067694583,0.039498167,neg,ns,-0.00321716,0.001242907,-2.588416441,0.010096098,neg,ns,1.995846449,0.0000292,0.0000427,0.683693876,0.494679202,pos,ns,0.8757544,Fgfr2,Fgfr2_Exon,7,130242504,130242553,130242552,130242553,50,+,TATTGTTGGGCCCCAAGTGCACCCCATCCTTAGTCCAACTGATCACGGCG,"Exon (Fgfr2-226/Fgfr2, exon 3 of 17)",7,130162451,130266263,103813,2,Fgfr2-211,23710,Fgfr2-211;Fgfr2-217;Fgfr2-207;Fgfr2-226;Fgfr2-215;Fgfr2-201;Fgfr2-202;Fgfr2-203;Fgfr2-204;Fgfr2-205;Fgfr2-206;Fgfr2-208;Fgfr2-209;Fgfr2-210;Fgfr2-212;Fgfr2-213;Fgfr2-214;Fgfr2-216;Fgfr2-219,Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,79,14183,ENSMUSG00000030849,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2953,cg02135166,0.000039,0.0000138,2.832431377,0.004922005,gain,ns,0.0000483,0.0000234,2.06762808,0.039504469,pos,ns,0.0129853,0.006848479,1.896085098,0.058878508,pos,ns,1.230043205,0.000183091,0.000235519,0.777396768,0.43751756,pos,ns,0.640013313,Lrmda,Lrmda_Intron,14,22152739,22152788,22152739,22152740,50,-,CGTTGTTAGCAATCTAAAGTTGCTGTTTATTGTCTTTTAAATGGCAGCAA,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,133027,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206,Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6660,cg11049661,-0.00000329,0.00000173,-1.906407619,0.057521839,loss,ns,-0.00000606,0.00000293,-2.067525561,0.039514185,neg,ns,0.000132833,0.000859322,0.154578493,0.877254216,pos,ns,0.056874536,-0.0000365,0.0000296,-1.235759415,0.217483611,neg,ns,0.952427218,Hdac3,Hdac3_Exon,18,37945692,37945741,37945740,37945741,50,+,ACCTTGTTGTTCAGCTGGGTTGCTCCTTGCAGAGATGCGCCTGTGTAACG,"Exon (Hdac3-201/Hdac3, exon 4 of 15)",18,37936972,37955016,18045,2,Hdac3-201,9275,Hdac3-202;Hdac3-203;Hdac3-201;Hdac3-204;Hdac3-206;Hdac3-205,Hdac3;Hdac3;Hdac3;Hdac3;Hdac3;Hdac3,-128;-1617;0;-1701;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,15183,ENSMUSG00000024454,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15406,cg11919469,-0.0000304,0.0000101,-3.022591294,0.002715286,loss,ns,0.0000353,0.0000171,2.06711033,0.039553558,pos,ns,0.001135878,0.005007045,0.22685591,0.820685309,pos,ns,0.085823341,-0.000217423,0.000172192,-1.262680699,0.207652933,neg,ns,0.795167085,Tyrp1,Tyrp1_Intergenic_upstream,4,80737347,80737396,80737395,80737396,50,+,TAATATTTCACACCTAAGGTGTTGTTTTCTTCATGCAGAGGCAGCAATCG,Distal Intergenic,4,80834123,80837684,3562,1,Tyrp1-203,-96727,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,22178,ENSMUSG00000005994,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24361,cg11168180,0.00000384,0.00000256,1.500218405,0.134575586,gain,ns,0.00000899,0.00000435,2.067107808,0.039553797,pos,ns,0.001155004,0.001274546,0.90620818,0.365529486,pos,ns,0.437077584,-0.0000975,0.0000438,-2.223842496,0.026879329,neg,ns,0.946452255,Egln1,Egln1_Exon,8,124914086,124914135,124914134,124914135,50,-,AATTTGGGTTCAATGTCAGCAAACTGGGCTTTGCCTTCTGGAAAAATTCG,"Exon (Egln1-201/Egln1, exon 3 of 5)",8,124908587,124949324,40738,2,Egln1-201,35189,Egln1-201,Egln1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,112405,ENSMUSG00000031987,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12504,cg03295832,0.000208306,0.00000909,22.92665831,1.01E-68,gain,yes,-0.0000319,0.0000154,-2.067000094,0.039564017,neg,ns,0.001158447,0.004522084,0.256175468,0.797985263,pos,ns,0.098005129,0.0000458,0.000155514,0.294264544,0.768752702,pos,ns,0.542276392,Fzd5,Fzd5_Exon,1,64735050,64735099,64735050,64735051,50,-,CGACGTGATGCCCACCACCAGGCACATGAAGTACTTGAGCATGAGCACCC,"Exon (Fzd5-201/Fzd5, exon 2 of 2)",1,64730558,64737751,7194,2,Fzd5-201,2652,Fzd5-201;Fzd5-202,Fzd5;Fzd5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,14367,ENSMUSG00000045005,conserved gene and region,1,64734827,64735054,228,*,228,23,0.692982456,0.841463415,0.100877193,6.27E-18,CpGisland,TRUE,NA,NRS
11467,cg20452324,0.00000141,0.00000206,0.686189204,0.493106696,gain,ns,-0.00000724,0.0000035,-2.0669634,0.039567498,neg,ns,-0.000540103,0.001026265,-0.526280208,0.599069846,neg,ns,0.22252254,-0.0000144,0.0000353,-0.407125142,0.684197047,neg,ns,0.956899999,Hnrnpk,Hnrnpk_fiveUTR,13,58397963,58398012,58397963,58397964,50,-,CGCAGGGGTAAGTCGATCCAGTACATGGGCAACGGAGATATATGGCCAAA,5' UTR,13,58391142,58403343,12202,2,Hnrnpk-202,5331,Hnrnpk-202;Hnrnpk-224;Hnrnpk-221;Hnrnpk-232;Hnrnpk-216;Hnrnpk-201;Hnrnpk-205;Hnrnpk-217;Hnrnpk-206;Hnrnpk-209;Hnrnpk-213;Hnrnpk-227;Hnrnpk-234;Hnrnpk-233;Hnrnpk-228;Hnrnpk-214;Hnrnpk-215;Hnrnpk-211;Hnrnpk-208;Hnrnpk-212;Hnrnpk-231;Hnrnpk-230;Hnrnpk-203;Hnrnpk-218;Hnrnpk-226;Hnrnpk-207;Hnrnpk-219;Hnrnpk-225;Hnrnpk-229;Hnrnpk-223;Hnrnpk-220;Hnrnpk-210;Hnrnpk-204;Hnrnpk-222;Rmi1-205;Rmi1-201;Rmi1-204;Rmi1-203,Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Rmi1;Rmi1;Rmi1;Rmi1,0;0;0;0;0;0;0;-4095;-3178;-3988;-2765;-3879;-4074;-3793;-3267;0;-2243;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;4490;4043;-4236;-4251;-4688;-4931,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,10,19,15387,ENSMUSG00000021546,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18637,cg05515765,0.00000261,0.00000551,0.473903103,0.635902599,gain,ns,0.0000193,0.00000936,2.066565134,0.039605306,pos,ns,0.007922191,0.002742361,2.888821774,0.004139249,pos,ns,2.383078484,-0.000264207,0.0000943,-2.801492036,0.0054065,neg,ns,0.880619715,Arid2,Arid2_Exon,15,96361780,96361829,96361780,96361781,50,+,CGAAAGCTGGGCATTAACGATATTGAAGGACAGCGGGTACTTCAGATTGC,"Exon (Arid2-201/Arid2, exon 8 of 21)",15,96287573,96404992,117420,1,Arid2-201,74207,Arid2-201;Arid2-203,Arid2;Arid2,0;4940,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,9,77044,ENSMUSG00000033237,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13646,cg05548785,-0.00000991,0.00000923,-1.073698912,0.283792697,loss,ns,0.0000324,0.0000157,2.066459237,0.039615364,pos,ns,-0.007082579,0.004591989,-1.542377412,0.12400206,neg,ns,0.906571099,0.000304997,0.000157918,1.931361415,0.054349776,pos,ns,0.710778268,Gm7675,Gm7675_Intergenic_upstream,7,71623146,71623195,71623194,71623195,50,+,AAAGTTGTCTCCTGACCGGGTCACCCTTCTCATAACTAGGGAGCAGAACG,Distal Intergenic,7,71696714,71697399,686,1,Gm7675-201,-73519,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,4,665535,NA,mapped to different genes,7,71623070,71623279,210,*,210,11,0.5,0.860655738,0.052380952,0.00000731,CpGisland,TRUE,U15,NS
27040,cg14338113,0.00000206,0.00000255,0.809739569,0.418710973,gain,ns,-0.00000895,0.00000433,-2.066365398,0.039624278,neg,ns,-0.000194177,0.001268861,-0.153032902,0.878471891,neg,ns,0.05627213,-0.0000355,0.0000436,-0.813908889,0.41632188,neg,ns,0.889965455,Dlgap4,Dlgap4_threeUTR,2,156761946,156761995,156761946,156761947,50,+,CGGAGGGGAAGTCCAGGGACAAATTCCTGGTCGGCAATAACGCTGCCCAC,3' UTR,2,156613705,156764361,150657,1,Dlgap4-205,148241,Dlgap4-205;Dlgap4-212;Dlgap4-206;Dlgap4-202;Dlgap4-209;Dlgap4-204;Dlgap4-208;Dlgap4-213;Dlgap4-201;Dlgap4-203;Dlgap4-207,Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,17,228836,ENSMUSG00000061689,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8553,cg09536551,0.0000675,0.0000219,3.086976489,0.00220469,gain,ns,-0.0000767,0.0000371,-2.066277287,0.03963265,neg,ns,0.016768363,0.010881392,1.541012732,0.124333809,pos,ns,0.90541076,-0.000245032,0.00037421,-0.6547978,0.51308349,neg,ns,0.383656349,Btrc,Btrc_Exon,19,45329983,45330032,45330031,45330032,50,+,TAATGAAATTCACGGCAGGATTACCCTCTCCATCCAATGGGCCAGCGTCG,"Exon (Gm28578-209/Gm28578-209, exon 6 of 7)",19,45363734,45507736,144003,1,Btrc-204,-33702,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,30,98,12234,ENSMUSG00000025217,conserved gene and region,19,45329908,45330151,244,*,244,14,0.471311475,1.056277056,0.057377049,8.59E-08,CpGisland,TRUE,NA,NRS
2451,cg16433982,-0.00000127,0.00000397,-0.320482084,0.748818828,loss,ns,0.0000139,0.00000674,2.066143797,0.039645337,pos,ns,0.006367459,0.001973695,3.226161292,0.00138869,pos,ns,2.857394659,-0.000187125,0.0000679,-2.756904225,0.00618099,neg,ns,0.918570941,Gm12026,Gm12026_Intergenic_downstream,11,19529462,19529511,19529462,19529463,50,+,CGGCAAACAAAGAAAGACAAAATTAAATCAGCCATCAAATTGCACCAAGG,Distal Intergenic,11,19383685,19384708,1024,1,Gm12026-201,145777,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,4,635455,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10394,cg26699563,0.000002,0.00000116,1.730689787,0.084502197,gain,ns,-0.00000406,0.00000196,-2.066100042,0.039649496,neg,ns,0.000483688,0.000575397,0.840617295,0.401210264,pos,ns,0.396627965,-0.0000258,0.0000198,-1.303448211,0.193388984,neg,ns,0.033685705,Ext1,Ext1_Exon,15,53345027,53345076,53345027,53345028,50,+,CGTTTTTCTTGCAAAGGGTGAAATCGAAGCAGGACTCCATGCGGCACTTC,"Exon (Ext1-201/Ext1, exon 1 of 11)",15,53064038,53346159,282122,2,Ext1-201,1083,Ext1-201;Ext1-203,Ext1;Ext1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,16,14042,ENSMUSG00000061731,conserved gene and region,15,53344911,53345348,438,*,438,28,0.552511416,0.841325376,0.063926941,3.40E-16,CpGisland,TRUE,NA,NRS
8229,cg18493498,0.0000429,0.0000109,3.94469798,0.0000989,gain,ns,0.0000382,0.0000185,2.065798422,0.039678176,pos,ns,0.013394259,0.00541719,2.472547257,0.013951671,pos,ns,1.855373761,-0.000227524,0.000186297,-1.221300081,0.222900419,neg,ns,0.30104806,Gm5246,Gm5246_Intergenic_downstream,19,44882886,44882935,44882934,44882935,50,+,TCTTAGAGCCCATTAAGGCAATTGAGAGCGCCTCCTAATCTCCCTCCCCG,Distal Intergenic,19,44851009,44851979,971,1,Gm5246-201,31877,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,20,383450,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
23389,cg20963741,0.0000197,0.0000068,2.897412314,0.004030509,gain,ns,0.0000239,0.0000116,2.065537551,0.039702996,pos,ns,0.007259117,0.003385761,2.144013314,0.032809348,pos,ns,1.484002394,-0.0000779,0.000116436,-0.668663818,0.504207554,neg,ns,0.26274114,Sox21,Sox21_Intergenic_downstream,14,118230495,118230544,118230543,118230544,50,-,TGTCACGCAGTGTCAACTTAGTCTATTCAATGGGGGCTACTTGAAGGCCG,Distal Intergenic,14,118233232,118237030,3799,2,Sox21-201,6535,Sox21-201,Sox21,6486,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,26,27,223227,ENSMUSG00000061517,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
3802,cg24507502,0.0000216,0.00000327,6.598025857,1.80E-10,gain,yes,-0.0000115,0.00000555,-2.065040971,0.039750279,neg,ns,-0.002337219,0.001627019,-1.436503361,0.151867569,neg,ns,0.81853496,0.0000425,0.000056,0.758827655,0.448532224,pos,ns,0.929478059,Celf4,Celf4_Exon,18,25481703,25481752,25481703,25481704,50,+,CGATTCTTAGCCTTGTTACATGACGCCATCATGTCACACTGTGAACTTTG,"Exon (Celf4-204/Celf4, exon 1 of 1)",18,25477632,25753983,276352,2,Celf4-202,272231,Celf4-202;Celf4-201;Celf4-203;Celf4-207;Celf4-206;Celf4-208;Celf4-204,Celf4;Celf4;Celf4;Celf4;Celf4;Celf4;Celf4,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,31,59,108013,ENSMUSG00000024268,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6505,cg03091146,-0.0000318,0.00000789,-4.027844635,0.0000709,loss,ns,0.0000277,0.0000134,2.064818526,0.039771475,pos,ns,-0.002830115,0.003926758,-0.720725609,0.471621485,neg,ns,0.326406419,0.000218425,0.000135041,1.617471904,0.106793495,pos,ns,0.249562133,Zfp536,Zfp536_Intron,7,37563462,37563511,37563510,37563511,50,-,TATAAAGTTTGGCTTTTGCAGCAGGAAGCAGCTGGGCCAAGCAACCAGCG,"Intron (Zfp536-211/Zfp536, intron 1 of 3)",7,37318024,37568390,250367,2,Zfp536-211,4879,Zfp536-211;Zfp536-202;Zfp536-201;Zfp536-203;Zfp536-206,Zfp536;Zfp536;Zfp536;Zfp536;Zfp536,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,73,112,243937,ENSMUSG00000043456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
17694,cg26255578,0.00000704,0.00000111,6.357313353,7.34E-10,gain,yes,-0.00000388,0.00000188,-2.064595521,0.039792734,neg,ns,-0.000442781,0.000551231,-0.803259248,0.422440359,neg,ns,0.374234597,0.000036,0.000019,1.898670153,0.058536278,pos,ns,0.027750271,Zic4,Zic4_threeUTR,9,91387073,91387122,91387121,91387122,50,+,GGGTTGAAAGTGTGAGTTTGACGGTGCATCAGCATGCCGCGTTAGGCTCG,3' UTR,9,91368970,91387793,18824,1,Zic4-204,18103,Zic4-204;Zic4-209;Zic4-205;Zic4-201;Zic4-202,Zic4;Zic4;Zic4;Zic4;Zic4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,18,55,22774,ENSMUSG00000036972,conserved gene and region,9,91387047,91387219,173,*,173,16,0.549132948,1.250225836,0.092485549,5.72E-12,CpGisland,TRUE,U13,Hc-P
9789,cg23100403,-0.00000247,0.00000226,-1.096811365,0.273575131,loss,ns,0.00000791,0.00000383,2.064470907,0.039804618,pos,ns,0.002471208,0.001122475,2.201571943,0.028432045,pos,ns,1.546191908,-0.000102418,0.0000386,-2.653199398,0.008384107,neg,ns,0.94291065,Gm48777,Gm48777_Intron,12,50873937,50873986,50873937,50873938,50,+,CGCCTGTTGGTATTATCAGGTTAGAAATTTCATAAACATATTGAAGCAGT,"Intron (Gm48779-201/Gm48779-201, intron 6 of 8)",12,50895099,50895471,373,2,Gm48777-201,21485,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,10,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11558,cg09123368,0.000175981,0.0000153,11.51819427,8.57E-26,gain,yes,-0.0000536,0.000026,-2.064112616,0.039838803,neg,ns,0.005643443,0.007604288,0.742139496,0.458564743,pos,ns,0.33859934,0.000123114,0.000261511,0.470779066,0.638129599,pos,ns,0.408685481,Vax1,Vax1_Promoter,19,59171401,59171450,59171449,59171450,50,+,TATTAACAAACAGTCCTCTGAGTGCGGCGGTCTGGCGTGGCTCCTGGGCG,Promoter (1-2kb),19,59166187,59170056,3870,2,Vax1-201,-1345,Vax1-201;Vax1-202,Vax1;Vax1,0;-4421,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,12,18,22326,ENSMUSG00000006270,conserved gene and region,19,59171425,59171501,77,*,77,8,0.727272727,0.811594203,0.103896104,0.00000163,CpGisland,TRUE,U13,Hc-P
24822,cg17064345,-0.0000452,0.00000747,-6.053417022,4.09E-09,loss,yes,-0.0000262,0.0000127,-2.063861692,0.039862758,neg,ns,0.001380475,0.003716638,0.371431197,0.710570122,pos,ns,0.148393058,-0.000555469,0.000127815,-4.345890065,0.0000188,neg,ns,0.784411683,Phc2,Phc2_fiveUTR,4,128743352,128743401,128743400,128743401,50,+,AGAGACAGGGCAGGGCATTGTTCATGCACTGACCGACCTCAGCAGCCCCG,5' UTR,4,128654702,128752881,98180,1,Phc2-201,88650,Phc2-201;Phc2-203;Phc2-209;Phc2-202;Phc2-208;Phc2-205;Phc2-210;Phc2-204;Phc2-206,Phc2;Phc2;Phc2;Phc2;Phc2;Phc2;Phc2;Phc2;Phc2,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,13,54383,ENSMUSG00000028796,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8148,cg27340951,0.000000191,0.00000486,0.039278509,0.968693624,gain,ns,0.000017,0.00000825,2.063762357,0.039872245,pos,ns,0.008687176,0.002418156,3.592480236,0.000380787,pos,ns,3.419317425,-0.000253286,0.0000832,-3.045755366,0.002520242,neg,ns,0.909950867,Zcchc7,Zcchc7_Intron,4,44799877,44799926,44799925,44799926,50,-,GAACAATACCCTGTGTGGTGTGACAGGTAAATTTCCCAATTTACCTGCCG,"Intron (Zcchc7-203/Zcchc7, intron 2 of 8)",4,44756568,44932203,175636,1,Zcchc7-203,43309,Zcchc7-203;Zcchc7-207;Zcchc7-205;Zcchc7-201,Zcchc7;Zcchc7;Zcchc7;Zcchc7,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,27,27,319885,ENSMUSG00000035649,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21595,cg09599532,0.0000189,0.0000054,3.492310124,0.000548469,gain,ns,0.0000189,0.00000917,2.063379722,0.039908807,pos,ns,0.005179712,0.002686765,1.927861808,0.054785596,pos,ns,1.261333606,-0.000053,0.0000924,-0.573270382,0.566877249,neg,ns,0.874976394,Zfhx3,Zfhx3_Intron,8,108484836,108484885,108484884,108484885,50,-,TGTGCTTTTCCTTGGGACAACTAATCCCTCAGCGTGACTGGTGGAAGCCG,"Intron (Zfhx3-204/Zfhx3, intron 3 of 15)",8,107942644,108961630,1018987,1,Zfhx3-204,542192,Zfhx3-204,Zfhx3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,114,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3946,cg14767971,0.00020733,0.000028,7.402996526,1.26E-12,gain,yes,0.0000982,0.0000476,2.06336583,0.039910135,pos,ns,0.02563696,0.013938985,1.839227172,0.066837993,pos,ns,1.174976596,-0.000617034,0.000479361,-1.287201697,0.198984234,neg,ns,0.692646603,5730522E02Rik,5730522E02Rik_Intron,11,25857441,25857490,25857441,25857442,50,+,CGCAGCCAAATCAAAACATCTCTGGAAGGCATTTCAGAATAATTGAATGC,"Intron (5730522E02Rik-202/5730522E02Rik, intron 2 of 5)",11,25617668,26210569,592902,2,5730522E02Rik-202,353079,5730522E02Rik-202;5730522E02Rik-201;5730522E02Rik-204,5730522E02Rik;5730522E02Rik;5730522E02Rik,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,90,70626,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12578,cg05875864,-0.0000428,0.00000753,-5.684866593,3.02E-08,loss,yes,-0.0000264,0.0000128,-2.063336026,0.039912984,neg,ns,-0.006500583,0.003746698,-1.735016742,0.083731699,neg,ns,1.077110098,-0.000370115,0.000128849,-2.872479739,0.004353522,neg,ns,0.844212732,Tjp1,Tjp1_Exon,7,65326273,65326322,65326321,65326322,50,+,GATCACCTTCCTCTAAGCCTTCCTTGGCTGCAGGGCTATCTTCTAGAACG,"Exon (Tjp1-202/Tjp1, exon 11 of 28)",7,65296165,65371239,75075,2,Tjp1-202,44917,Tjp1-202;Tjp1-201;Tjp1-207,Tjp1;Tjp1;Tjp1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,13,21872,ENSMUSG00000030516,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22338,cg23066817,-0.000007,0.00000251,-2.793877551,0.005532191,loss,ns,-0.00000879,0.00000426,-2.063202664,0.039925735,neg,ns,-0.00058115,0.001247587,-0.465819247,0.641671996,neg,ns,0.192686914,-0.0000659,0.0000429,-1.5353275,0.125723363,neg,ns,0.957482374,Brpf1,Brpf1_Exon,6,113317634,113317683,113317682,113317683,50,-,GGACACAGGCAACATCTTCAGCGAGCCGGTCCCTCTGTCTGAGGTAACCG,"Exon (Brpf1-204/Brpf1, exon 6 of 14)",6,113307137,113324857,17721,1,Brpf1-204,10497,Brpf1-204;Brpf1-209;Brpf1-203;Brpf1-202;Brpf1-201;Brpf1-210;Brpf1-208;Brpf1-205;Brpf1-207;Brpf1-206,Brpf1;Brpf1;Brpf1;Brpf1;Brpf1;Brpf1;Brpf1;Brpf1;Brpf1;Brpf1,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,16,78783,ENSMUSG00000001632,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18635,cg14333709,0.000091,0.00000723,12.59182194,1.21E-29,gain,yes,-0.0000253,0.0000123,-2.063045559,0.03994076,neg,ns,0.008563238,0.003597263,2.380486893,0.017893856,pos,ns,1.747296055,-0.00000146,0.00012371,-0.011791392,0.990599633,neg,ns,0.147190625,Hoxb2,Hoxb2_Exon,11,96351888,96351937,96351888,96351889,50,-,CGCTGTCTTGGAGACATTTCAAACTTCATCAATCAAGGAGTCGACATTAA,"Exon (Hoxb2-202/Hoxb2, exon 1 of 1)",11,96350525,96353658,3134,1,Hoxb2-202,1363,Hoxb2-202;Hoxb2-201;Hoxb3-202,Hoxb2;Hoxb2;Hoxb3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,3,103889,ENSMUSG00000075588,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11784,cg19182173,0.000079,0.0000117,6.754854034,7.07E-11,gain,yes,-0.000041,0.0000199,-2.062530832,0.039990021,neg,ns,0.039445207,0.005820626,6.776798553,6.20E-11,pos,yes,10.20787804,-0.001902293,0.000200171,-9.503346913,5.80E-19,neg,yes,0.767087847,Mbnl1,Mbnl1_Intron,3,60614617,60614666,60614665,60614666,50,-,TTTATGTTAATGCGCTTGAACCCCACTGGCCCATTGCCATCATGTGCTCG,"Intron (Mbnl1-216/Mbnl1, intron 4 of 6)",3,60473074,60621458,148385,1,Mbnl1-216,141543,Mbnl1-216;Mbnl1-211;Mbnl1-201;Mbnl1-202;Mbnl1-203;Mbnl1-218;Mbnl1-219;Mbnl1-214;Mbnl1-207;Mbnl1-205;Mbnl1-212;Mbnl1-210;Mbnl1-215;Mbnl1-223;Mbnl1-206,Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1,0;0;0;0;0;0;0;0;0;0;0;18976;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,36,56758,ENSMUSG00000027763,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2188,cg15212784,-0.000000494,0.00000133,-0.370437361,0.71130962,loss,ns,0.00000467,0.00000226,2.062522029,0.039990864,pos,ns,0.001973888,0.000663525,2.974851253,0.003161664,pos,ns,2.500084273,-0.0000464,0.0000228,-2.035003117,0.042701052,neg,ns,0.966785485,Dnajc1,Dnajc1_threeUTR,2,18308863,18308912,18308911,18308912,50,+,TCAGCATTGCTCATTTTTCTCACCCGCCTGTAGTAGAATACAGGCTGTCG,3' UTR,2,18206333,18392811,186479,2,Dnajc1-202,83899,Dnajc1-202;Dnajc1-209;Dnajc1-205;Dnajc1-201;Dnajc1-210;Dnajc1-207;Dnajc1-206;Dnajc1-204,Dnajc1;Dnajc1;Dnajc1;Dnajc1;Dnajc1;Dnajc1;Dnajc1;Dnajc1,0;0;0;0;0;-1847;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,5,13418,ENSMUSG00000026740,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3694,cg21222667,0.00000912,0.00000252,3.616222028,0.000348815,gain,ns,-0.00000884,0.00000428,-2.062460993,0.039996709,neg,ns,0.002045999,0.001255214,1.630000455,0.104117014,pos,ns,0.982478296,-0.0000624,0.0000432,-1.446325472,0.149096229,neg,ns,0.041484574,Lpp,Lpp_Intergenic_downstream,16,25059445,25059494,25059493,25059494,50,-,AACGCAGCCAAGAGCTGCTAACTGGGTCATTAACCTCCAAAAGCAAAGCG,Distal Intergenic,16,24845175,24979450,134276,1,Lpp-206,214319,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,7,210126,ENSMUSG00000033306,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
15609,cg22583701,0.00000157,0.00000508,0.308449068,0.757947818,gain,ns,-0.0000178,0.00000862,-2.062304196,0.040011728,neg,ns,-0.003200647,0.002526722,-1.266718848,0.206206734,neg,ns,0.685697157,-0.000165256,0.0000869,-1.901821383,0.05812134,neg,ns,0.828818883,Septin3,Septin3_Exon,15,82290810,82290859,82290858,82290859,50,-,TGACAATGGAGGCCTCCCTCCGGTGAGCGTGGACACAGAGGAAAGCCACG,"Exon (Septin3-208/Septin3, exon 11 of 12)",15,82268802,82294574,25773,1,Septin3-208,22008,Septin3-208;Septin3-209;Septin3-202;Septin3-205;Septin3-201;Septin3-204;Septin3-203;Septin3-207;Septin3-206,Septin3;Septin3;Septin3;Septin3;Septin3;Septin3;Septin3;Septin3;Septin3,0;0;0;15817;0;0;15410;8277;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23725,cg13054821,0.0000493,0.00000637,7.743268045,1.39E-13,gain,yes,0.0000223,0.0000108,2.062214022,0.040020367,pos,ns,0.010448291,0.003171727,3.294196365,0.00110132,pos,ns,2.95808637,-0.000217332,0.000109075,-1.99249707,0.047193193,neg,ns,0.164531344,Rbm19,Rbm19_Intergenic_downstream,5,120231873,120231922,120231921,120231922,50,-,AATGCAATCTGACATTTCTGAAACAAGACCCCCCGGTTGCCATGGCAACG,Distal Intergenic,5,120175725,120197969,22245,1,Rbm19-210,56197,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,12,13,74111,ENSMUSG00000029594,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
22961,cg13209256,0.000000464,0.00000224,0.207018985,0.836130946,gain,ns,0.00000786,0.00000381,2.062188518,0.040022811,pos,ns,0.002723764,0.001116614,2.439307037,0.015276029,pos,ns,1.81598952,-0.0000569,0.0000384,-1.482868139,0.139125334,neg,ns,0.95897505,Gm5357,Gm5357_Intergenic_upstream,8,116385042,116385091,116385090,116385091,50,-,AGTCAGTAAATACCAGCGGGGTCTGCCAGTTGTTGATAAAATAATGAACG,Distal Intergenic,8,116489186,116491109,1924,1,Gm5357-201,-104144,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,15,15,384868,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2629,cg23769370,-0.00000222,0.0000043,-0.517682444,0.605049068,loss,ns,-0.000015,0.0000073,-2.062119444,0.04002943,neg,ns,-0.004720288,0.002137834,-2.207976723,0.027977738,neg,ns,1.553187409,0.0000566,0.0000735,0.769621765,0.442110319,pos,ns,0.943665978,Camk2g,Camk2g_threeUTR,14,20736651,20736700,20736699,20736700,50,+,AAATGTAAAAAACACCTCGGTACAGCAGAGACAGACACGAAGGGCGGGCG,3' UTR,14,20734875,20794051,59177,2,Camk2g-203,57351,Camk2g-203;Camk2g-201;Camk2g-202;Camk2g-205;Camk2g-217;Camk2g-210;Camk2g-209;Camk2g-204;Camk2g-212;Camk2g-211;Ndst2-202,Camk2g;Camk2g;Camk2g;Camk2g;Camk2g;Camk2g;Camk2g;Camk2g;Camk2g;Camk2g;Ndst2,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,15,12325,ENSMUSG00000021820,conserved gene and region,14,20736668,20736817,150,*,150,10,0.593333333,0.765306122,0.066666667,0.00000279,CpGisland,TRUE,U11,Tr-P
4533,cg08681849,-0.00000508,0.0000143,-0.355449863,0.722494334,loss,ns,0.0000501,0.0000243,2.061660235,0.040073459,pos,ns,-0.001749002,0.007112256,-0.245913825,0.805911678,neg,ns,0.093712551,0.000318205,0.00024459,1.300974648,0.194233297,pos,ns,0.899251122,Mnx1,Mnx1_Promoter,5,29487739,29487788,29487787,29487788,50,+,CGTTTAATTGTATTCTTTCGTTTCTTATTTCCAATTAATTAGTCCTATCG,Promoter (9-10kb),5,29473261,29478470,5210,2,Mnx1-201,-9269,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,6,8,15285,ENSMUSG00000001566,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
18133,cg07293124,0.000131471,0.0000128,10.28237984,1.57E-21,gain,yes,-0.0000448,0.0000217,-2.061610347,0.040078245,neg,ns,-0.00318257,0.006363765,-0.50010813,0.617353757,neg,ns,0.209465904,0.000121763,0.000218849,0.556380254,0.578352324,pos,ns,0.703581131,Hlcs,Hlcs_Intron,16,94179353,94179402,94179401,94179402,50,-,AATTTGCAAACTGCAATTGGTTAACCAAGCTAAACTTAATTAGTCCAACG,"Intron (Hlcs-209/Hlcs, intron 2 of 6)",16,94128882,94246085,117204,2,Hlcs-209,66683,Hlcs-209;Hlcs-202;Hlcs-201;Hlcs-205;Hlcs-206;Hlcs-207;Hlcs-208,Hlcs;Hlcs;Hlcs;Hlcs;Hlcs;Hlcs;Hlcs,0;0;0;0;0;-4353;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,3,110948,ENSMUSG00000040820,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2183,cg23797553,-0.0000497,0.00000848,-5.86564827,1.15E-08,loss,yes,0.0000297,0.0000144,2.061604996,0.040078758,pos,ns,0.002755909,0.004220994,0.652905329,0.514301213,pos,ns,0.288782452,-0.000344748,0.00014516,-2.374961271,0.018158982,neg,ns,0.843045109,Defb41,Defb41_Intergenic_upstream,1,18307836,18307885,18307836,18307837,50,+,CGGCCCTGGGTCCACTGGTCCATATTCTGACAGATAATTAAGAAAGCAGC,Distal Intergenic,1,18250980,18265138,14159,2,Defb41-201,-42698,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,6,77673,ENSMUSG00000067773,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4596,cg21170489,0.00000213,0.00000401,0.531352923,0.595554752,gain,ns,0.0000141,0.00000682,2.061203423,0.040117299,pos,ns,0.00881043,0.001997054,4.411713283,0.0000142,pos,ns,4.84869218,-0.000309477,0.0000687,-4.506166182,0.00000937,neg,ns,0.889056196,Ahcyl2,Ahcyl2_Exon,6,29906672,29906721,29906720,29906721,50,+,CTTTTCTAGGCTCTTGCCTTGATAGAGCTTTACAATGCTCCTGAGGGTCG,"Exon (Ahcyl2-202/Ahcyl2, exon 15 of 17)",6,29768480,29912304,143825,1,Ahcyl2-202,138192,Ahcyl2-202;Ahcyl2-204;Ahcyl2-205;Ahcyl2-201;Ahcyl2-203;Ahcyl2-215;Ahcyl2-212;Ahcyl2-220;Ahcyl2-206,Ahcyl2;Ahcyl2;Ahcyl2;Ahcyl2;Ahcyl2;Ahcyl2;Ahcyl2;Ahcyl2;Ahcyl2,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,74340,ENSMUSG00000029772,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17294,cg00256932,-0.00000351,0.00000571,-0.614494501,0.539339341,loss,ns,0.00002,0.0000097,2.060737577,0.040162048,pos,ns,0.002769652,0.002842213,0.974469973,0.330583016,pos,ns,0.480719463,0.0000335,0.0000977,0.342432334,0.732257614,pos,ns,0.595729528,Mapk8ip2,Mapk8ip2_Exon,15,89456557,89456606,89456605,89456606,50,+,GCACCCCATCTGCTCCTTCCAGGATGACTTCCAGGAGTTTGAGATGATCG,"Exon (Mapk8ip2-201/Mapk8ip2, exon 3 of 12)",15,89453913,89464468,10556,1,Mapk8ip2-201,2644,Mapk8ip2-201;Mapk8ip2-202,Mapk8ip2;Mapk8ip2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,60597,ENSMUSG00000022619,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27749,cg12557016,-0.0000018,0.0000016,-1.121724533,0.262847699,loss,ns,0.0000056,0.00000272,2.060512765,0.040183659,pos,ns,0.001616467,0.00079667,2.029028274,0.043309668,pos,ns,1.363415141,-0.0000351,0.0000274,-1.281745351,0.200889801,neg,ns,0.963883158,Wdr26,Wdr26_threeUTR,1,181197629,181197678,181197677,181197678,50,-,TTGGTATTGTGATATAGGCACCGATCCCTTTGTAGTTCCACCGCCTGCCG,3' UTR,1,181173228,181211978,38751,2,Wdr26-207,14300,Wdr26-207;Wdr26-209;Wdr26-208;Wdr26-201;Wdr26-206,Wdr26;Wdr26;Wdr26;Wdr26;Wdr26,0;0;0;0;5573,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,7,226757,ENSMUSG00000038733,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9486,cg07531407,-0.0000217,0.00000854,-2.537543848,0.011653011,loss,ns,0.0000299,0.0000145,2.060297151,0.040204395,pos,ns,-0.000370751,0.004248542,-0.087265478,0.930516835,neg,ns,0.031275765,0.000108147,0.000146107,0.740191661,0.459743918,pos,ns,0.871455615,Zbtb16,Zbtb16_Intergenic_upstream,9,48873066,48873115,48873066,48873067,50,-,CGTTTATCTCAGCACCATCTGCACAGGCTCATTTGTTGCTCCTGAGGCAG,Distal Intergenic,9,48656917,48836222,179306,2,Zbtb16-202,-36893,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,37,235320,ENSMUSG00000066687,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5269,cg10420536,-0.00000409,0.00000268,-1.52529289,0.128205601,loss,ns,0.00000937,0.00000455,2.059712306,0.040260685,pos,ns,0.001590242,0.001333346,1.192669829,0.23391079,pos,ns,0.630949745,-0.0000603,0.0000459,-1.314394145,0.189685259,neg,ns,0.96330391,Ranbp17,Ranbp17_Intron,11,33240520,33240569,33240520,33240521,50,+,CGTTCAGTCCAGCCGACTCAGAAGTAATTTTATACGCAGCAGAGAGCGGG,"Intron (Ranbp17-202/Ranbp17, intron 25 of 27)",11,33211795,33513746,301952,2,Ranbp17-202,273177,Ranbp17-202,Ranbp17,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,31,66011,ENSMUSG00000040594,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11830,cg13655781,0.0000437,0.00000725,6.033999812,4.56E-09,gain,yes,0.0000254,0.0000123,2.059679652,0.04026383,pos,ns,0.011050276,0.003605972,3.06443742,0.00237241,pos,ns,2.624810214,-0.000208333,0.000124009,-1.679981159,0.093968386,neg,ns,0.150598615,P2ry1,P2ry1_Exon,3,61003651,61003700,61003651,61003652,50,+,CGTGGCCATCTGGATGTTCGTCTTCCACATGAAGCCCTGGAGCGGCATCT,Promoter (<=1kb),3,61002795,61008979,6185,1,P2ry1-201,856,P2ry1-201;P2ry1-202;P2ry1-203,P2ry1;P2ry1;P2ry1,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,18441,ENSMUSG00000027765,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
7724,cg15647640,-0.00000926,0.00000325,-2.849181047,0.004676503,loss,ns,0.0000114,0.00000552,2.059603596,0.040271156,pos,ns,0.003760139,0.001617422,2.324773402,0.020729671,pos,ns,1.68340759,-0.000194818,0.0000556,-3.50247426,0.000528734,neg,ns,0.919826588,Arhgap15,Arhgap15_Intron,2,43979019,43979068,43979067,43979068,50,+,GATGAGCGGTTGCTGGCCTGAAACAGTATTATTTATATAGAACATTTACG,"Intron (Arhgap15-203/Arhgap15, intron 6 of 14)",2,43748824,44395953,647130,1,Arhgap15-203,230195,Arhgap15-203;Arhgap15-202;Arhgap15-201,Arhgap15;Arhgap15;Arhgap15,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,72,78,76117,ENSMUSG00000049744,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20131,cg23929037,0.0000479,0.0000195,2.453794971,0.014685703,gain,ns,0.0000683,0.0000332,2.059488157,0.040282277,pos,ns,0.01459409,0.009713872,1.502396847,0.134012597,pos,ns,0.872854375,-0.000113714,0.000334059,-0.340399839,0.733785991,neg,ns,0.255396912,Calcoco1,Calcoco1_Intergenic_downstream,15,102694468,102694517,102694468,102694469,50,-,CGAATTCATTCCGAGCGGGGAGGGTGATTTATTCTTCAAATATACCGACA,Distal Intergenic,15,102706972,102709902,2931,2,Calcoco1-203,15434,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,29,67488,ENSMUSG00000023055,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
21741,cg13694642,-0.0000107,0.00000401,-2.667080454,0.00805313,loss,ns,0.000014,0.00000681,2.059440423,0.040286877,pos,ns,0.006120714,0.001994989,3.068044451,0.002344803,pos,ns,2.629893591,-0.000174248,0.0000686,-2.539775514,0.011580462,neg,ns,0.849876206,Zfhx3,Zfhx3_Exon,8,108951335,108951384,108951335,108951336,50,-,CGGGCAAAAGAAAAGAAGTCCAAGTTAAGCATGGCCAAGCATTTTGGTAT,"Exon (Zfhx3-204/Zfhx3, exon 15 of 16)",8,107942644,108961630,1018987,1,Zfhx3-204,1008691,Zfhx3-204;Zfhx3-201,Zfhx3;Zfhx3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,46,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6079,cg12777882,-0.00000116,0.00000188,-0.617083892,0.537632352,loss,ns,0.00000657,0.00000319,2.059430057,0.040287876,pos,ns,0.000896966,0.000933983,0.960366297,0.337619341,pos,ns,0.471572683,-0.0000337,0.0000321,-1.049871237,0.29459508,neg,ns,0.955467835,Mccc1,Mccc1_threeUTR,3,35984982,35985031,35984982,35984983,50,+,CGCTGGGGCCTCCTCAATGATCTTCTGATGTCGCCTCTGCACACTACAGT,3' UTR,3,35959312,36000609,41298,2,Mccc1-205,15578,Mccc1-205;Mccc1-201;Mccc1-203;Mccc1-207;Mccc1-206,Mccc1;Mccc1;Mccc1;Mccc1;Mccc1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,1,72039,ENSMUSG00000027709,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22847,cg16951028,-0.00000594,0.00000189,-3.147469166,0.001807044,loss,ns,0.00000661,0.00000321,2.059325278,0.040297974,pos,ns,0.004094563,0.000940049,4.355691215,0.0000181,pos,ns,4.743500952,-0.000128956,0.0000323,-3.988948856,0.0000829,neg,ns,0.950038307,Tmcc1,Tmcc1_threeUTR,6,116021892,116021941,116021940,116021941,50,+,CGCCCAAAAAACTTCTTGGATAAAATCTAAAAAATACTATTGCAATTGCG,3' UTR,6,116018611,116193486,174876,2,Tmcc1-202,171545,Tmcc1-202;Tmcc1-210;Tmcc1-201;Tmcc1-203;Tmcc1-206;Tmcc1-208;Tmcc1-209,Tmcc1;Tmcc1;Tmcc1;Tmcc1;Tmcc1;Tmcc1;Tmcc1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,3,330401,ENSMUSG00000030126,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
575,cg24160552,-0.0000113,0.00000516,-2.183977186,0.029713094,loss,ns,-0.0000181,0.00000877,-2.059197767,0.040310265,neg,ns,-0.000424011,0.002569182,-0.16503715,0.869022308,neg,ns,0.060969075,-0.0000808,0.0000884,-0.914255762,0.361293017,neg,ns,0.904556103,Esrra,Esrra_fiveUTR,19,6914090,6914139,6914138,6914139,50,-,ATGCCCACCCGCAGGCACTTGGTGAAGCGGCAGGCCTGGCAGGCCTTGCG,5' UTR,19,6910977,6921051,10075,2,Esrra-203,6912,Esrra-203;Esrra-206;Esrra-201;Esrra-205;Esrra-204;Esrra-202;Prdx5-202;Prdx5-205;Prdx5-201;Prdx5-204;Trmt112-201;Trmt112-202;Trmt112-203;Trmt112-204,Esrra;Esrra;Esrra;Esrra;Esrra;Esrra;Prdx5;Prdx5;Prdx5;Prdx5;Trmt112;Trmt112;Trmt112;Trmt112,0;0;0;0;0;7628;-4112;-4560;-3984;-4473;4392;4343;3937;3926,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,4,26379,ENSMUSG00000024955,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11720,cg05229781,0.00000143,0.00000314,0.45632596,0.648475134,gain,ns,-0.000011,0.00000533,-2.058541421,0.040373584,neg,ns,-0.000322072,0.001560322,-0.20641349,0.836603436,neg,ns,0.077480356,0.0000461,0.0000537,0.85850832,0.391275144,pos,ns,0.925552487,Gm49336,Gm49336_Exon,14,60223333,60223382,60223381,60223382,50,+,ACCTAAGCCACTTGATTGCAAGCCAGTGCCAATACCTGAGCCGAATGGCG,"Exon (Nupl1-201/Nupl1, exon 13 of 16)",14,60205282,60251479,46198,2,Gm49336-206,28097,Gm49336-206;Gm49336-201;Gm49336-205;Gm49336-203;Gm49336-202;Nupl1-201,Gm49336;Gm49336;Gm49336;Gm49336;Gm49336;Nupl1,0;0;0;0;8755;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7238,cg21589847,0.00000208,0.00000423,0.492905841,0.622428071,gain,ns,-0.0000148,0.00000719,-2.058500836,0.040377502,neg,ns,-0.000183179,0.002105168,-0.08701415,0.930716442,neg,ns,0.031182614,-0.0000703,0.0000724,-0.970735189,0.332436952,neg,ns,0.822371735,Cntfr,Cntfr_Intron,4,41686225,41686274,41686273,41686274,50,+,GGCCTTTGTGGGCCTCTGGCGGGTTTTGGACAATAGGCCCTTCCGTTCCG,"Intron (Cntfr-203/Cntfr, intron 2 of 9)",4,41657498,41695442,37945,2,Cntfr-203,9168,Cntfr-203;Cntfr-204;Cntfr-201;Cntfr-202;Cntfr-205,Cntfr;Cntfr;Cntfr;Cntfr;Cntfr,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,12,12804,ENSMUSG00000028444,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25843,cg11246106,0.00000143,0.0000138,0.103605781,0.917549193,gain,ns,-0.0000482,0.0000234,-2.058385933,0.040388597,neg,ns,-0.016088248,0.006854509,-2.347104442,0.019548892,neg,ns,1.708877846,0.000224571,0.000235726,0.952678849,0.34149503,pos,ns,0.283357526,Gm42424,Gm42424_Intergenic_upstream,5,139682176,139682225,139682176,139682177,50,-,CGCCAATTTCAAAGAGACATCTTAATAGTGATGTCAACGAATTAATTAGA,Distal Intergenic,5,139701647,139702022,376,1,Gm42424-201,-19471,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,5,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
6261,cg06172116,0.00000763,0.0000179,0.425632978,0.670670645,gain,ns,-0.0000626,0.0000304,-2.058376431,0.040389514,neg,ns,0.058560455,0.008916799,6.567430251,2.16E-10,pos,ns,9.6660268,-0.001625586,0.000306648,-5.30114731,0.000000219,neg,yes,0.863143056,Ankhd1,Ankhd1_Exon,18,36655402,36655451,36655450,36655451,50,+,AGAGAAATATTTTGCCACCAGGTGACTCTCCTATTCCATCTGTTTCTTCG,"Exon (Ankhd1-212/Ankhd1, exon 31 of 34)",18,36560611,36658908,98298,1,Ankhd1-201,94791,Ankhd1-201;Ankhd1-212;Ankhd1-202;Ankhd1-203;Maskbp3-201,Ankhd1;Ankhd1;Ankhd1;Ankhd1;Maskbp3,0;0;0;-59;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,6,108857,ENSMUSG00000024483,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13628,cg14017612,0.0000197,0.0000111,1.778260396,0.076341161,gain,ns,0.0000387,0.0000188,2.058365677,0.040390553,pos,ns,0.005012813,0.005510959,0.909608092,0.363735891,pos,ns,0.439213844,-0.000173719,0.000189521,-0.916619899,0.360054372,neg,ns,0.152298865,Dlx1,Dlx1_Intergenic_downstream,2,71538124,71538173,71538124,71538125,50,+,CGAGGAGTCAAGATGTTATGCTAAAAACTATGCATTGATATTCCCATTTA,Distal Intergenic,2,71530780,71532689,1910,1,Dlx1-206,7344,Dlx1-201;Dlx1-203,Dlx1;Dlx1,0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,36,13390,ENSMUSG00000041911,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
21219,cg13541961,-0.00000353,0.00000115,-3.065799393,0.002361951,loss,ns,0.00000403,0.00000196,2.058165825,0.040409857,pos,ns,0.002932271,0.000573451,5.113377037,0.000000555,pos,ns,6.255606295,-0.0000548,0.0000197,-2.777625984,0.005809359,neg,ns,0.033678396,Acot11,Acot11_Intergenic_upstream,4,106827967,106828016,106827967,106827968,50,-,CGGGATGGAGAAAATGTGCTAGAACATTAGCTTAATAAATCAAGCGCTCC,Distal Intergenic,4,106747235,106804998,57764,2,Acot11-201,-23018,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,3,329910,ENSMUSG00000034853,conserved gene and region,4,106827860,106827968,109,*,109,9,0.688073395,0.7848,0.082568807,0.0000019,CpGisland,TRUE,NA,NRS
5939,cg07998356,0.0000745,0.00000752,9.909441405,2.74E-20,gain,yes,-0.0000263,0.0000128,-2.057832349,0.040442085,neg,ns,-0.003091334,0.003741852,-0.826150899,0.409353869,neg,ns,0.3879011,0.000297806,0.000128682,2.314278229,0.021305878,pos,ns,0.710237481,Cdon,Cdon_Intron,9,35424717,35424766,35424717,35424718,50,-,CGAGCACCTGAGGAATTTCTGCCCTGCAGTGCCTTTTTTGTATGTGTGTA,"Intron (Cdon-205/Cdon, intron 1 of 4)",9,35421128,35455365,34238,1,Cdon-205,3589,Cdon-205;Cdon-204;Cdon-202;Cdon-206,Cdon;Cdon;Cdon;Cdon,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,3,57810,ENSMUSG00000038119,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25848,cg07000752,-0.00000266,0.0000033,-0.804098394,0.421956336,loss,ns,0.0000116,0.00000561,2.057383481,0.0404855,pos,ns,0.00437006,0.001644716,2.657030341,0.008291563,pos,ns,2.081363613,-0.00017147,0.0000566,-3.031560231,0.002638178,neg,ns,0.922536106,Tbc1d8b,Tbc1d8b_Exon,X,139732318,139732367,139732366,139732367,50,-,CTTCTGGTTGCTGTATGTGAACGAATGTTGCCTGATTATTTTAATCGTCG,"Exon (Tbc1d8b-201/Tbc1d8b, exon 11 of 21)",20,139684996,139753405,68410,1,Tbc1d8b-201,47322,Tbc1d8b-201;Tbc1d8b-202,Tbc1d8b;Tbc1d8b,0;-3805,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,245638,ENSMUSG00000042473,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12957,cg03402373,0.0000005,0.00000141,0.35522262,0.722664384,gain,ns,-0.00000492,0.00000239,-2.057341299,0.040489582,neg,ns,-0.001005994,0.000699918,-1.437301631,0.151640873,neg,ns,0.819183723,0.0000241,0.0000241,1.003196164,0.316548632,pos,ns,0.975794753,Erbb4,Erbb4_Exon,1,68740419,68740468,68740467,68740468,50,-,GTTATCTCCAGGTTGCCCATGACAACCTCACAGTTTTCATAGTACTTGCG,"Exon (Erbb4-201/Erbb4, exon 2 of 28)",1,68032186,69107756,1075571,2,Erbb4-201,367288,Erbb4-201;Erbb4-202;Erbb4-205,Erbb4;Erbb4;Erbb4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,13,13869,ENSMUSG00000062209,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24717,cg27334722,-0.0000173,0.00000933,-1.854376966,0.064634784,loss,ns,0.0000326,0.0000159,2.057082341,0.040514648,pos,ns,0.00921653,0.004645108,1.984136729,0.048122208,pos,ns,1.31765445,-0.000386955,0.000159745,-2.422328057,0.015994495,neg,ns,0.711140727,Ccnt2,Ccnt2_threeUTR,1,127803418,127803467,127803418,127803419,50,-,CGTGAAACTGGACAAGAAGCCAGTGGAGACCAACGGTCCTGATGCCAATC,3' UTR,1,127774164,127805932,31769,1,Ccnt2-202,29254,Ccnt2-202;Ccnt2-201;Ccnt2-207,Ccnt2;Ccnt2;Ccnt2,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,11,72949,ENSMUSG00000026349,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15306,cg10920740,-0.000000778,0.00000183,-0.426071641,0.670351325,loss,ns,-0.00000638,0.0000031,-2.05685988,0.040536193,neg,ns,0.002351374,0.000908894,2.587073378,0.010134683,pos,ns,1.994189838,-0.0000914,0.0000313,-2.92323709,0.003719121,neg,ns,0.948803451,Cul3,Cul3_Exon,1,80267184,80267233,80267232,80267233,50,+,TCCTCAGGTGTTCGTGCCAAATATTCTCTCTCAATAAGTCCTTCAATACG,"Exon (Cul3-201/Cul3, exon 16 of 16)",1,80264923,80340480,75558,2,Cul3-201,73247,Cul3-201;Cul3-202;Cul3-205;Cul3-204,Cul3;Cul3;Cul3;Cul3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,7,26554,ENSMUSG00000004364,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22708,cg12270051,-0.000014,0.0000153,-0.910913554,0.363048677,loss,ns,-0.0000536,0.0000261,-2.056713406,0.040550384,neg,ns,-0.005556777,0.007635725,-0.727733936,0.467325752,neg,ns,0.330380287,0.00000931,0.000262592,0.035472243,0.97172601,pos,ns,0.298251285,Sox6,Sox6_Exon,7,115777170,115777219,115777170,115777171,50,-,CGGTCCCGACTCCCTTCGTCAGGCTTATGTGGTGAGGTAGAGGTATTTCG,"Exon (Sox6-210/Sox6, exon 4 of 16)",7,115470872,116031047,560176,2,Sox6-210,253828,Sox6-210;Sox6-201;Sox6-202;Sox6-204;Sox6-205;Sox6-203;Sox6-212;Sox6-206;Sox6-209;Sox6-214;Sox6-211,Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,57,20679,ENSMUSG00000051910,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15490,cg27362294,-0.0000246,0.00000679,-3.62441441,0.000338381,loss,ns,0.0000237,0.0000115,2.056607621,0.040560635,pos,ns,0.010509033,0.003378546,3.11051956,0.002041215,pos,ns,2.690111299,-0.000328303,0.000116188,-2.825625157,0.005025068,neg,ns,0.846835051,Gm7503,Gm7503_Intergenic_upstream,18,81153676,81153725,81153724,81153725,50,+,TTTGCAAAACGCAATACAGGCCTGATTGTTTTTGGAGTGGATGCAGGCCG,Distal Intergenic,18,80997003,80997383,381,2,Gm7503-201,-156293,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,17,21,665124,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23178,cg12545510,0.0000602,0.0000126,4.791978218,0.00000257,gain,ns,-0.0000439,0.0000213,-2.056580416,0.040563272,neg,ns,0.016582589,0.006254727,2.651208858,0.008432559,pos,ns,2.074040618,-0.000595023,0.0002151,-2.766268458,0.006010463,neg,ns,0.178410091,Rnf220,Rnf220_Intron,4,117391557,117391606,117391557,117391558,50,-,CGAGAGCTCTCTGCTAACCCCGATAAGCCTTGGGCTCTTAGCGTCTTAAA,"Intron (Rnf220-201/Rnf220, intron 2 of 14)",4,117271463,117497052,225590,2,Rnf220-201,105446,Rnf220-201;Rnf220-207,Rnf220;Rnf220,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6637,cg23440250,0.000058,0.00000579,10.01510402,1.22E-20,gain,yes,-0.0000202,0.00000983,-2.056532729,0.040567894,neg,ns,0.004832287,0.002880937,1.677331758,0.094485565,pos,ns,1.024634535,-0.0000294,0.0000991,-0.296893968,0.76674629,neg,ns,0.104409324,Msx1,Msx1_Exon,5,37893784,37893833,37893832,37893833,50,+,TTACTTTGATGGGATACATGTGCTCGGCTTTATCTCCGGCCCTTTCTCCG,"Exon (Gm20052-201/Gm20052-201, exon 1 of 2)",5,37820485,37824583,4099,2,Msx1-201,-69201,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,14,17701,ENSMUSG00000048450,mapped to different genes,5,37893820,37893998,179,*,179,16,0.553072626,1.171849427,0.089385475,9.87E-12,CpGisland,TRUE,U13,Hc-P
21537,cg12115012,-0.00000948,0.00000696,-1.362788909,0.17393817,loss,ns,0.0000243,0.0000118,2.056497589,0.0405713,pos,ns,0.013702558,0.003462475,3.957446063,0.000094,pos,ns,4.026995726,-0.000535165,0.000119074,-4.494384603,0.00000987,neg,ns,0.724387252,Gpr61,Gpr61_Exon,3,108150997,108151046,108150997,108150998,50,+,CGGCAGGCCACCTCCCCAAAGAGGGCGTGGTCAAAGAGGGCAGAGCTGGA,"Exon (Gpr61-201/Gpr61, exon 2 of 2)",3,108148321,108154882,6562,2,Gpr61-201,3836,Gnai3-201;Gpr61-201;Gpr61-202,Gnai3;Gpr61;Gpr61,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,4,229714,ENSMUSG00000046793,conserved gene and region,3,108150848,108151060,213,*,213,11,0.600938967,0.573281135,0.051643193,0.00000834,CpGisland,TRUE,U11,Tr-P
3008,cg24260717,-0.0000121,0.00000468,-2.580545642,0.010324104,loss,ns,0.0000163,0.00000794,2.056308376,0.040589646,pos,ns,-0.0000523,0.002327538,-0.022458252,0.982096863,neg,ns,0.007845676,0.0000198,0.00008,0.247033673,0.805045682,pos,ns,0.933401643,Lrmda,Lrmda_Intron,14,22373563,22373612,22373563,22373564,50,+,CGTTATCCATCTTGTTATCCAGGAAATAACATTTGTTGCAAACAGTTTGC,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,353851,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206;Lrmda-202,Lrmda;Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20212,cg02597084,-0.0000161,0.00000638,-2.525549389,0.012049922,loss,ns,0.0000223,0.0000108,2.056256409,0.040594686,pos,ns,0.00435122,0.003177871,1.36922488,0.171920153,pos,ns,0.76467321,-0.000200717,0.000109287,-1.836605702,0.067225465,neg,ns,0.154625128,Hoxc11,Hoxc11_Exon,15,102949816,102949865,102949816,102949817,50,+,CGGAGATAAAAGTCTAGACAATAGATGGCTGTTTATGACAACGAGGCTCT,Promoter (4-5kb),15,102954427,102957708,3282,1,Hoxc11-201,-4562,Hoxc11-201,Hoxc11,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,24,109663,ENSMUSG00000001656,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
26845,cg03300886,0.00000376,0.00000286,1.313599647,0.189952309,gain,ns,0.00001,0.00000486,2.056200219,0.040600136,pos,ns,0.002074563,0.00142495,1.455884581,0.146436504,pos,ns,0.834350648,-0.0000215,0.000049,-0.437831114,0.661813615,neg,ns,0.928102908,Asxl1,Asxl1_Exon,2,153392870,153392919,153392918,153392919,50,-,GATGCTGCCTCGAGTTGTCCTGACTCCTCTGAAGGTAAACGGGGCCCACG,"Exon (Asxl1-205/Asxl1, exon 6 of 12)",2,153345829,153404007,58179,1,Asxl1-205,47041,Asxl1-205;Asxl1-201;Asxl1-204;Asxl1-203,Asxl1;Asxl1;Asxl1;Asxl1,0;0;45067;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,8,228790,ENSMUSG00000042548,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8101,cg13244241,0.0000264,0.00000416,6.343341197,7.95E-10,gain,yes,-0.0000145,0.00000707,-2.05590804,0.040628485,neg,ns,0.006111986,0.002071223,2.950907241,0.003409996,pos,ns,2.467246189,-0.000304114,0.0000712,-4.269515565,0.0000261,neg,ns,0.043890066,Pax2,Pax2_Exon,19,44742619,44742668,44742667,44742668,50,+,GGTTTTGTGTCAGGAAGATCTTTCTCGCCGCTACCCAGCCTGGCGTGACG,"Exon (Gm35610-202/Gm35610-202, exon 6 of 6)",19,44756045,44837851,81807,1,Pax2-203,-13377,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,16,166,18504,ENSMUSG00000004231,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
3681,cg19267377,-0.0000149,0.0000054,-2.759684091,0.006129916,loss,ns,0.0000189,0.00000918,2.055770717,0.040641815,pos,ns,0.00180665,0.002688897,0.671892649,0.502152455,pos,ns,0.299164409,-0.000235051,0.0000925,-2.541888521,0.011512142,neg,ns,0.903058402,Gm12067,Gm12067_Intergenic_upstream,11,24983275,24983324,24983275,24983276,50,+,CGACCATATGAGCTATATTGGAGCCGTATGCATCCTATTTAGCTGATATC,Distal Intergenic,11,24552438,24553962,1525,2,Gm12067-201,-429313,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,26,58,100417843,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3998,cg19910849,-0.0000122,0.00000579,-2.110433241,0.035621829,loss,ns,0.0000202,0.00000984,2.055732463,0.040645529,pos,ns,0.007582287,0.00288356,2.629487886,0.008977853,pos,ns,2.046827487,-0.00024854,0.0000992,-2.506313122,0.012711648,neg,ns,0.860190442,Gm50479,Gm50479_Intron,8,26351666,26351715,26351666,26351667,50,+,CGAGTCCAGCCCTTGACTGTCAGTGGGGCCCATCAGTCCTAATTTATCGC,"Intron (Gm45307-201/Gm45307-201, intron 2 of 2)",8,26237222,26237407,186,1,Gm50479-201,114444,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,21,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27710,cg21965280,-0.00000685,0.00000164,-4.175868049,0.0000386,loss,ns,0.00000573,0.00000279,2.055467406,0.04067127,pos,ns,0.002095352,0.000816198,2.567211468,0.010720902,pos,ns,1.969768661,-0.0000847,0.0000281,-3.018743648,0.002748994,neg,ns,0.957718357,Zbtb18,Zbtb18_Intergenic_downstream,1,177517003,177517052,177517051,177517052,50,+,AATCTGTCTCTTTATATTTAGCTGCAGGGCACCTAACAAGTTCTTAGGCG,Distal Intergenic,1,177445821,177450764,4944,1,Zbtb18-201,71182,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,22,30928,ENSMUSG00000063659,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2558,cg03455856,-0.00000437,0.00000479,-0.913080397,0.361909825,loss,ns,0.0000167,0.00000813,2.054684313,0.040747403,pos,ns,0.004087498,0.002382351,1.715741005,0.087208583,pos,ns,1.059440772,-0.000118363,0.0000819,-1.444706633,0.149550301,neg,ns,0.93029513,Ppp3cb,Ppp3cb_Exon,14,20523614,20523663,20523614,20523615,50,-,CGAAAAAATTGTTATTAATGAAGGGAACCCTGTAGTTTGACTTTTTCTGT,"Exon (Ppp3cb-202/Ppp3cb, exon 8 of 14)",14,20499364,20546573,47210,2,Ppp3cb-202,22910,Ppp3cb-202;Ppp3cb-205;Ppp3cb-201;Ppp3cb-206;Ppp3cb-209;Ppp3cb-203;Ppp3cb-204,Ppp3cb;Ppp3cb;Ppp3cb;Ppp3cb;Ppp3cb;Ppp3cb;Ppp3cb,0;0;0;0;-4807;-2893;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,10,19056,ENSMUSG00000021816,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10573,cg16641813,-0.00000342,0.00000232,-1.477325751,0.140603522,loss,ns,0.00000809,0.00000394,2.054650737,0.04075067,pos,ns,0.002053231,0.00115338,1.780185716,0.076024959,pos,ns,1.119043804,-0.0000445,0.0000397,-1.12193946,0.262756441,neg,ns,0.958406834,Fnip1,Fnip1_Exon,11,54487712,54487761,54487760,54487761,50,-,GTCTTTCACAGTTCTGCAGCCCCAGGCGGGCATTCTCTGAGCAGGGTCCG,"Exon (Fnip1-201/Fnip1, exon 7 of 18)",11,54438199,54518235,80037,1,Fnip1-201,49513,Fnip1-201;Fnip1-202,Fnip1;Fnip1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,7,216742,ENSMUSG00000035992,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8243,cg13315482,-0.0000141,0.00000748,-1.890530876,0.059619468,loss,ns,-0.0000261,0.0000127,-2.054456277,0.040769595,neg,ns,-0.006737663,0.003722196,-1.810130965,0.071243694,neg,ns,1.147253567,-0.000100042,0.000128006,-0.781543673,0.435079274,neg,ns,0.813313023,Slf2,Slf2_Intergenic_upstream,19,44899902,44899951,44899902,44899903,50,+,CGCTATTGGTCAGTAAATTGGATTGTCAGGCTAGATTATTGGTTCGTATA,Distal Intergenic,19,44931151,44983188,52038,1,Slf2-201,-31200,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,15,17,226151,ENSMUSG00000036097,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
19593,cg22328770,-0.00000615,0.00000265,-2.316052162,0.021207512,loss,ns,-0.00000926,0.00000451,-2.054410026,0.040774098,neg,ns,-0.000025,0.001320919,-0.018945851,0.984896491,neg,ns,0.00660941,-0.0000602,0.0000454,-1.325900049,0.185848953,neg,ns,0.962153104,Klf12,Klf12_Exon,14,99987432,99987481,99987480,99987481,50,-,CTTGTACTGCTCTGGCTATGGAAAGGGCCGTAGATCCAGTTTCATTAACG,"Exon (Klf12-205/Klf12, exon 5 of 8)",14,99870632,100284679,414048,2,Klf12-205,297198,Klf12-205;Klf12-201,Klf12;Klf12,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,11,16597,ENSMUSG00000072294,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11787,cg09041336,0.0000381,0.0000205,1.864150343,0.063245673,gain,ns,-0.0000714,0.0000348,-2.05403338,0.040810779,neg,ns,0.060928213,0.010185504,5.98185535,6.08E-09,pos,ns,8.216270632,-0.003734274,0.000350279,-10.66086578,8.17E-23,neg,yes,0.703277348,Mbnl1,Mbnl1_Exon,3,60614670,60614719,60614718,60614719,50,+,CCTGCTAATTAAGACTCAGTCGGCTGTCAAATCACTGAAGCGACCCCTCG,"Exon (Mbnl1-216/Mbnl1, exon 5 of 7)",3,60473074,60621458,148385,1,Mbnl1-216,141596,Mbnl1-216;Mbnl1-211;Mbnl1-201;Mbnl1-202;Mbnl1-203;Mbnl1-218;Mbnl1-219;Mbnl1-214;Mbnl1-207;Mbnl1-205;Mbnl1-212;Mbnl1-210;Mbnl1-215;Mbnl1-223;Mbnl1-206,Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1,0;0;0;0;0;0;0;0;0;0;0;19029;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,19,36,56758,ENSMUSG00000027763,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6924,cg25199827,-0.000000566,0.00000373,-0.151915109,0.87935271,loss,ns,0.000013,0.00000633,2.053621755,0.040850899,pos,ns,0.004390466,0.001854462,2.36751414,0.018521769,pos,ns,1.732317527,-0.000159821,0.0000638,-2.506018915,0.012722015,neg,ns,0.924535094,Rims2,Rims2_Exon,15,39585689,39585738,39585737,39585738,50,+,AGTGCTTCTCGTTTCAGCAGCACAAGCTACATGTCTGTCCAATCAGAACG,"Exon (Rims2-202/Rims2, exon 21 of 27)",15,39198332,39681940,483609,1,Rims2-202,387357,Rims2-202;Rims2-205;Rims2-201;Rims2-206;Rims2-208;Rims2-209,Rims2;Rims2;Rims2;Rims2;Rims2;Rims2,0;0;0;0;0;-969,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,16,19,116838,ENSMUSG00000037386,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23306,cg09913581,-0.000000993,0.00000342,-0.290583409,0.77156425,loss,ns,0.0000119,0.0000058,2.053344454,0.040877946,pos,ns,0.004912317,0.001700037,2.889534718,0.004130123,pos,ns,2.384036973,-0.000135922,0.0000585,-2.324881688,0.020723798,neg,ns,0.926699399,Eri3,Eri3_Intron,4,117666059,117666108,117666107,117666108,50,+,TTTGAATAAGTGGACTGCATTTCTGTAATTTCATTATTACGTAAAACACG,"Intron (Eri3-201/Eri3, intron 8 of 8)",4,117550365,117674297,123933,1,Eri3-201,115694,Eri3-201;Eri3-206;Eri3-203,Eri3;Eri3;Eri3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,82,97,140546,ENSMUSG00000033423,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11552,cg12289745,0.0000235,0.00000323,7.288432668,2.62E-12,gain,yes,-0.0000113,0.00000548,-2.053202473,0.0408918,neg,ns,0.000811911,0.001606876,0.505273371,0.613725878,pos,ns,0.212025564,0.0000893,0.0000553,1.615639683,0.107189466,pos,ns,0.073901032,Vax1,Vax1_Promoter,19,59170526,59170575,59170574,59170575,50,-,GTTTCTGTCCTTGTCCCCAATCAAGTAGGGGTTTAGCCAGTGAATAAACG,Promoter (<=1kb),19,59166187,59170056,3870,2,Vax1-201,-519,Vax1-201;Vax1-202,Vax1;Vax1,0;-3546,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,12,18,22326,ENSMUSG00000006270,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20071,cg25348293,0.000000648,0.00000667,0.097209494,0.922622847,gain,ns,-0.0000232,0.0000113,-2.053148924,0.040897026,neg,ns,-0.001400574,0.003317395,-0.422190804,0.673178407,neg,ns,0.171869823,-0.0000395,0.000114085,-0.346070554,0.729524445,neg,ns,0.66310905,Sp1,Sp1_Exon,15,102408809,102408858,102408857,102408858,50,-,TGTACCAGTGGCCCTGAATGGGAACATCACCTTGCTACCTGTCAACAGCG,"Exon (Sp1-201/Sp1, exon 3 of 6)",15,102406333,102432679,26347,1,Sp1-202,2476,Sp1-206;Sp1-202;Sp1-201;Sp1-203;Sp1-205;Sp1-204,Sp1;Sp1;Sp1;Sp1;Sp1;Sp1,0;0;0;0;1540;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,Exon,3,4,20683,ENSMUSG00000001280,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
15848,cg09183355,-0.00000653,0.00000468,-1.394890601,0.164047456,loss,ns,0.0000163,0.00000795,2.05272916,0.040938013,pos,ns,0.004284594,0.002329303,1.839431663,0.066807846,pos,ns,1.17517253,-0.000107846,0.0000801,-1.346316556,0.179184045,neg,ns,0.922791999,Rbm25,Rbm25_Exon,12,83662183,83662232,83662231,83662232,50,+,CACAGACTGTCAGGGTATCAGCGTGGCAGGGGGCGTCCATTTACAGCACG,"Exon (Rbm25-206/Rbm25, exon 8 of 10)",12,83631236,83674417,43182,1,Rbm25-202,30947,Rbm25-202;Rbm25-201;Rbm25-205;Rbm25-210;Rbm25-208;Rbm25-206;Rbm25-217;Rbm25-218,Rbm25;Rbm25;Rbm25;Rbm25;Rbm25;Rbm25;Rbm25;Rbm25,0;0;29892;0;0;0;3658;-744,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,67039,ENSMUSG00000010608,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12233,cg20889526,0.00000114,0.00000662,0.172595544,0.863081983,gain,ns,0.0000231,0.0000113,2.052465445,0.040963781,pos,ns,0.00914524,0.003296948,2.77384988,0.005875534,pos,ns,2.230952637,-0.000188474,0.000113382,-1.662292789,0.097464848,neg,ns,0.622130956,Ptch1,Ptch1_Intron,13,63554732,63554781,63554732,63554733,50,+,CGCAGCTGGCATTTACACACTCAGCATTACCATATGTATAGCTGCTCGGT,"Intron (Ptch1-201/Ptch1, intron 2 of 22)",13,63508328,63565735,57408,2,Ptch1-201,10954,Ptch1-201;Ptch1-204;Ptch1-206;Ptch1-202;Ptch1-207;Ptch1-203;Ptch1-205,Ptch1;Ptch1;Ptch1;Ptch1;Ptch1;Ptch1;Ptch1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,36,19206,ENSMUSG00000021466,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24228,cg19972243,0.0000293,0.0000105,2.779220104,0.005781625,gain,ns,-0.0000368,0.0000179,-2.052208141,0.040988936,neg,ns,-0.018834592,0.005248202,-3.588770603,0.000386025,neg,ns,3.413384519,0.000480487,0.000180485,2.662195778,0.008168234,pos,ns,0.665956377,Gm12902,Gm12902_Intergenic_downstream,4,124035861,124035910,124035909,124035910,50,-,ATTCTGATGCCACATTGAAACGCAAAATAGCTGGAATCAAGCAGGCACCG,Distal Intergenic,4,123926234,123926555,322,1,Gm12902-201,109676,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,34,34,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22807,cg07154623,-0.0000203,0.0000056,-3.626119578,0.000336246,loss,ns,0.0000195,0.00000952,2.05199172,0.041010104,pos,ns,-0.006537377,0.002788015,-2.344814294,0.019667208,neg,ns,1.706257295,0.000117705,0.0000959,1.227634526,0.220515561,pos,ns,0.804217247,Plxnd1,Plxnd1_Exon,6,115963914,115963963,115963914,115963915,50,-,CGAAGTGCTTATACTCCAGGAAGGGGATGCCCTGGCTGCGGTTCAGCTCC,"Exon (Plxnd1-201/Plxnd1, exon 22 of 36)",6,115954811,115995005,40195,2,Plxnd1-201,31042,Plxnd1-201;Plxnd1-204;Plxnd1-203,Plxnd1;Plxnd1;Plxnd1,0;-3887;5463,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,67784,ENSMUSG00000030123,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16191,cg11525285,0.0000411,0.00000387,10.63467729,1.00E-22,gain,yes,-0.0000135,0.00000657,-2.051973906,0.041011847,neg,ns,0.001690624,0.001924136,0.878641009,0.380276469,pos,ns,0.419900548,-0.0000264,0.0000662,-0.398256114,0.690715548,neg,ns,0.087438848,Vsx2,Vsx2_Exon,12,84569966,84570015,84570014,84570015,50,+,GCTGAGCAAGCCCAAATCCGAGACAGTGGCCAAGAGTACCTCGGGGGGCG,Promoter (<=1kb),12,84569762,84595457,25696,1,Vsx2-201,204,Vsx2-201;Vsx2-202,Vsx2;Vsx2,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,20,12677,ENSMUSG00000021239,conserved gene and region,12,84569841,84570039,199,*,199,16,0.693467337,0.689625298,0.08040201,5.23E-11,CpGisland,TRUE,U13,Hc-P
23904,cg02260640,0.000000432,0.00000341,0.126799795,0.899181062,gain,ns,-0.0000119,0.00000579,-2.05179521,0.041029333,neg,ns,0.002657674,0.0016954,1.567578608,0.117999665,pos,ns,0.928119226,-0.000147743,0.0000583,-2.533977593,0.011769787,neg,ns,0.927089171,Mical3,Mical3_threeUTR,6,121021230,121021279,121021278,121021279,50,+,TGGCCAGCAGCTGGGTCGCCATGTACTTCACTTTGTTCTGGTTCCCAACG,3' UTR,6,120931722,121081609,149888,2,Mical3-216,60330,Mical3-216;Mical3-221;Mical3-222;Mical3-223;Mical3-211;Mical3-219;Mical3-209;Mical3-201;Mical3-215;Mical3-207;Mical3-213;Mical3-210;Mical3-214;Mical3-208,Mical3;Mical3;Mical3;Mical3;Mical3;Mical3;Mical3;Mical3;Mical3;Mical3;Mical3;Mical3;Mical3;Mical3,0;0;0;0;0;0;0;0;0;0;0;109720;4484;4129,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,5,194401,ENSMUSG00000051586,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24388,cg03706372,0.00000783,0.00000307,2.547244571,0.011340572,gain,ns,-0.0000107,0.00000522,-2.051543603,0.041053964,neg,ns,-0.002359898,0.00153006,-1.542356708,0.124007088,neg,ns,0.90655349,0.000056,0.0000526,1.064713155,0.287834349,pos,ns,0.87169868,Chd4,Chd4_Exon,6,125120343,125120392,125120343,125120344,50,+,CGTAAACAGGTCAACTACAATGATGGCTCCCAGGAGGACCGAGGTGTGTG,"Exon (Chd4-203/Chd4, exon 26 of 39)",6,125095981,125130585,34605,1,Chd4-203,24362,Chd4-203;Chd4-201;Chd4-202;Chd4-204;Chd4-205,Chd4;Chd4;Chd4;Chd4;Chd4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,15,107932,ENSMUSG00000063870,conserved gene but different region,6,125120280,125120502,223,*,223,12,0.596412556,0.612918003,0.053811659,0.00000182,CpGisland,TRUE,U10,Tr-S
19731,cg08691554,0.0000683,0.0000105,6.472869777,3.76E-10,gain,yes,0.0000368,0.0000179,2.051436785,0.041064425,pos,ns,0.00531132,0.005250822,1.011521624,0.312555686,pos,ns,0.505072596,0.000123386,0.000180575,0.683294847,0.494930912,pos,ns,0.893303818,Cavin1,Cavin1_Exon,11,100959066,100959115,100959114,100959115,50,-,GTCTTCTCCATCTTCTCCTTGGAGAAGGCCTTCTTGAAGTCGTCCACGCG,"Exon (Cavin1-201/Cavin1, exon 2 of 2)",11,100956733,100970887,14155,2,Cavin1-201,11772,Cavin1-201,Cavin1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,19285,ENSMUSG00000004044,conserved gene and region,11,100959106,100959309,204,*,204,28,0.691176471,1.224699829,0.137254902,7.07E-26,CpGisland,TRUE,NA,NRS
6761,cg01197537,0.0000182,0.00000341,5.325951812,0.000000193,gain,yes,-0.0000119,0.0000058,-2.051419921,0.041066076,neg,ns,-0.00045463,0.001698289,-0.26769903,0.789109019,neg,ns,0.102862993,0.000167471,0.0000584,2.867448894,0.004421492,pos,ns,0.096864811,Lhx2,Lhx2_Intron,2,38348401,38348450,38348449,38348450,50,+,GTTCTGAGTTAGTCACGGTGGCCGGCTGGAGGCTGCTACCTCATTATGCG,"Intron (Lhx2-203/Lhx2, intron 1 of 4)",2,38339281,38369199,29919,1,Lhx2-203,9120,Lhx2-203;Lhx2-204;Lhx2-202;Lhx2-201;Lhx2-207;Lhx2-205,Lhx2;Lhx2;Lhx2;Lhx2;Lhx2;Lhx2,0;0;0;0;-3318;-4082,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,33,16870,ENSMUSG00000000247,mapped to different genes,2,38348236,38348469,234,*,234,26,0.713675214,0.876404494,0.111111111,2.22E-21,CpGisland,TRUE,U3,Pr-B
4808,cg05485177,-0.00000754,0.00000263,-2.867440357,0.004421608,loss,ns,0.00000916,0.00000447,2.051398045,0.041068219,pos,ns,-0.000757444,0.001308789,-0.578736448,0.563187256,neg,ns,0.249347181,-0.00000337,0.000045,-0.074807913,0.940415796,neg,ns,0.927961109,Rbm42,Rbm42_Exon,7,30645895,30645944,30645943,30645944,50,+,GGGATGATGACCCTGGCCCCTCACCTGCTCTCTGTAGCACGTGGGGGACG,"Exon (Rbm42-201/Rbm42, exon 5 of 10)",7,30640999,30650144,9146,2,Rbm42-202,4200,Rbm42-202;Rbm42-201;Rbm42-203,Rbm42;Rbm42;Rbm42,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,68035,ENSMUSG00000036733,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26343,cg07983788,0.0000184,0.00000495,3.710883523,0.000244754,gain,ns,-0.0000173,0.00000842,-2.051347163,0.041073203,neg,ns,-0.001801787,0.002465636,-0.730759474,0.465478016,neg,ns,0.332100826,0.000159337,0.0000848,1.879134845,0.061164102,pos,ns,0.095831775,Kiz,Kiz_Intron,2,146833494,146833543,146833542,146833543,50,+,AATTAATTTACTGCTCTTAATTCTTATGCAAATTCTGACCTCCGATGGCG,"Intron (Gm14114-201/Gm14114-201, intron 1 of 1)",2,146855864,146970097,114234,1,Kiz-201,-22321,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,29,228730,ENSMUSG00000074749,mapped to different genes,2,146833542,146833580,39,*,39,6,0.615384615,1.636363636,0.153846154,0.00000642,CpGisland,TRUE,U13,Hc-P
14011,cg22561517,-0.00000547,0.00000306,-1.790114145,0.074411382,loss,ns,0.0000106,0.00000519,2.051147535,0.041092763,pos,ns,0.001328951,0.001521111,0.873671701,0.382973348,pos,ns,0.416831449,-0.0000259,0.0000523,-0.495215259,0.62079901,neg,ns,0.953521717,Gm13668,Gm13668_Intergenic_upstream,2,74209289,74209338,74209289,74209290,50,-,CGCTGTAATAAGCAGTTATTATGTATGTGTAAAAATAATGAGAGGCCGTG,Distal Intergenic,2,73959669,73960669,1001,2,Gm13668-201,-248669,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,18,20,667729,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19786,cg03875754,-0.00000313,0.00000177,-1.763163846,0.078858044,loss,ns,0.00000618,0.00000301,2.050693537,0.041137275,pos,ns,0.001853883,0.000882811,2.099977177,0.036538733,pos,ns,1.437246511,-0.0000588,0.0000304,-1.936113365,0.053762651,neg,ns,0.054138877,Msl2,Msl2_Exon,9,101075345,101075394,101075393,101075394,50,-,GGAGACCCCAAGGCGTTTACTGAGATTAACAGGCTCTTGCCTTACTTCCG,"Exon (Msl2-202/Msl2, exon 1 of 3)",9,101074101,101101785,27685,1,Msl2-202,1244,Msl2-202;Msl2-201,Msl2;Msl2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,19,77853,ENSMUSG00000066415,conserved gene and region,9,101075182,101075428,247,*,247,16,0.514170041,0.987506247,0.064777328,1.37E-09,CpGisland,TRUE,U1,Pr-A
2015,cg03402170,0.00000306,0.0000101,0.303198933,0.761941634,gain,ns,0.0000351,0.0000171,2.050662308,0.041140338,pos,ns,0.004949718,0.005015895,0.986806555,0.32450705,pos,ns,0.488775863,-0.000284383,0.000172496,-1.648631238,0.100236225,neg,ns,0.465865301,Gdap1,Gdap1_Exon,1,17146971,17147020,17146971,17146972,50,+,CGAGGAACATGATGTAAGTCTGCCCTTGAGTGAGCACAATGAGCCTTGGT,"Exon (Gdap1-201/Gdap1, exon 2 of 6)",1,17145362,17164271,18910,1,Gdap1-201,1609,Gdap1-201;Gdap1-202;Gdap1-204,Gdap1;Gdap1;Gdap1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,14545,ENSMUSG00000025777,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7909,cg07021307,0.0000192,0.00000765,2.507475322,0.01267077,gain,ns,0.0000266,0.000013,2.050414256,0.041164677,pos,ns,-0.001641384,0.003807573,-0.431084157,0.666706783,neg,ns,0.176065126,0.000144778,0.000130942,1.105662935,0.269729773,pos,ns,0.881062896,Hif1an,Hif1an_Intron,19,44632451,44632500,44632451,44632452,50,+,CGAGATGAAATTGAGACATGGAAGAATTTATTGCCCAGAAAATTCCATTC,"Intron (Gm35460-201/Gm35460-201, intron 3 of 6)",19,44562850,44576274,13425,1,Hif1an-201,69601,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,31,319594,ENSMUSG00000036450,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21833,cg15741042,-0.0000205,0.00000536,-3.82867786,0.000155885,loss,ns,0.0000187,0.0000091,2.050266326,0.041179198,pos,ns,-0.001006192,0.002665603,-0.377472539,0.706080764,neg,ns,0.15114562,0.000122088,0.0000917,1.331824634,0.183896198,pos,ns,0.867038993,Lmo1,Lmo1_Intergenic_upstream,7,109231881,109231930,109231929,109231930,50,+,CTCACTAATCTGTTTGCTTATTTGGAATAATTGGGTCGGCTGCCAGCGCG,Distal Intergenic,7,109138675,109175207,36533,2,Lmo1-202,-56674,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,34,66,109594,ENSMUSG00000036111,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9217,cg25325909,-0.00000198,0.00000127,-1.568383702,0.117811752,loss,ns,0.00000441,0.00000215,2.050169853,0.04118867,pos,ns,0.00257233,0.000629909,4.083650957,0.0000565,pos,ns,4.248081944,-0.0000698,0.0000217,-3.224234131,0.001397761,neg,ns,0.967553399,Cadm1,Cadm1_Intron,9,47654821,47654870,47654821,47654822,50,+,CGCATGACATTTGTAATTTAAAGCCGGCTAGACATTAAAGTGACAGAACT,"Intron (Cadm1-204/Cadm1, intron 1 of 9)",9,47530173,47853385,323213,1,Cadm1-204,124648,Cadm1-204;Cadm1-209;Cadm1-206;Cadm1-202;Cadm1-203;Cadm1-207;Cadm1-205;Cadm1-211;Cadm1-210;Cadm1-208;Cadm1-201,Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,77,54725,ENSMUSG00000032076,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4272,cg22044564,0.0000733,0.00000566,12.9550876,5.67E-31,gain,yes,-0.0000197,0.00000962,-2.049908039,0.041214385,neg,ns,0.006585309,0.002817271,2.337477777,0.020050474,pos,ns,1.697875348,-0.0000483,0.0000969,-0.498343884,0.618595059,neg,ns,0.127440694,Scube3,Scube3_Promoter,17,28141859,28141908,28141859,28141860,50,-,CGGTCTGCGCCTGACCTCCCTGCTCCCGGGGAAGCCGTCTCCATGGAGAC,Promoter (<=1kb),17,28142141,28174854,32714,1,Scube3-201,-282,Scube3-201;Scube3-207;Scube3-202;Scube3-203,Scube3;Scube3;Scube3;Scube3,0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,7,268935,ENSMUSG00000038677,conserved gene and region,17,28141589,28142079,491,*,491,51,0.686354379,0.88216022,0.103869654,7.12E-40,CpGisland,TRUE,U3,Pr-B
27099,cg00878023,0.0000423,0.00000965,4.38706575,0.0000158,gain,ns,0.0000336,0.0000164,2.049751575,0.04122976,pos,ns,0.024758345,0.004800799,5.157130547,0.000000448,pos,ns,6.348708507,-0.000710849,0.000165099,-4.305592231,0.0000224,neg,ns,0.516231373,Cnksr2,Cnksr2_fiveUTR,X,158043271,158043320,158043271,158043272,50,+,CGGAAATGACGAGGGGCCTCCTGCCACCCAAAATATCTCTCCGCAGCCCT,Promoter (<=1kb),20,157821436,158043294,221859,2,Cnksr2-201,0,Cnksr2-201;Cnksr2-202,Cnksr2;Cnksr2,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,11,245684,ENSMUSG00000025658,conserved gene and region,X,158042802,158043636,835,*,835,118,0.761676647,0.977839088,0.141317365,1.60E-109,CpGisland,TRUE,U3,Pr-B
8345,cg18743610,-0.0000293,0.00000787,-3.720687468,0.000235837,loss,ns,-0.0000274,0.0000134,-2.049718245,0.041233035,neg,ns,-0.005839649,0.003914917,-1.491640491,0.136810309,neg,ns,0.863881176,0.000220593,0.000134634,1.638470501,0.102338086,pos,ns,0.854047827,Zeb2,Zeb2_Intron,2,45032446,45032495,45032494,45032495,50,+,TGTTCTGCAGCAGGGCCTGTGTGAGAAAACAGCCTTTGCTTTCTCCTACG,"Intron (Zeb2-212/Zeb2, intron 3 of 10)",2,44983632,45117395,133764,2,Zeb2-212,84900,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-218;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26737,cg13622484,0.0000298,0.00000448,6.639778364,1.41E-10,gain,yes,-0.0000156,0.00000762,-2.049472613,0.041257183,neg,ns,-0.001787778,0.002231435,-0.801178559,0.423641919,neg,ns,0.373001074,-0.0000116,0.0000767,-0.150564861,0.880416903,neg,ns,0.782575063,Huwe1,Huwe1_Exon,X,151923486,151923535,151923486,151923487,50,-,CGGTTTAGGCTCAGCTAGCAGCATCCAGGCAGCTGTTCGGCAGCTGGAGG,"Exon (Huwe1-201/Huwe1, exon 72 of 83)",20,151803327,151935417,132091,1,Huwe1-201,120159,Huwe1-201;Huwe1-202;Huwe1-209;Huwe1-205;Huwe1-213,Huwe1;Huwe1;Huwe1;Huwe1;Huwe1,0;0;2204;0;-723,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,22,28,59026,ENSMUSG00000025261,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16874,cg13234740,-0.0000103,0.00000744,-1.382640381,0.167770358,loss,ns,0.0000259,0.0000126,2.049471495,0.041257293,pos,ns,0.008598103,0.003701107,2.323116671,0.020819712,pos,ns,1.68152529,-0.000279496,0.000127281,-2.195899892,0.028839695,neg,ns,0.896660302,Ythdc1,Ythdc1_threeUTR,5,86831768,86831817,86831816,86831817,50,+,TTTAGTTTCACAAATCTTATTCCCAACAGACGATTTTCAGGAGTTCGCCG,3' UTR,5,86804221,86836654,32434,1,Ythdc1-202,27547,Ythdc1-202;Ythdc1-203;Ythdc1-208;Ythdc1-201;Ythdc1-207;Ythdc1-206;Ythdc1-205;Ythdc1-204,Ythdc1;Ythdc1;Ythdc1;Ythdc1;Ythdc1;Ythdc1;Ythdc1;Ythdc1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,12,17,231386,ENSMUSG00000035851,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20079,cg24691260,-0.00000465,0.00000261,-1.778484841,0.076304244,loss,ns,0.0000091,0.00000444,2.049354591,0.04126879,pos,ns,0.003421739,0.001301212,2.629655555,0.008973526,pos,ns,2.047036885,-0.000103279,0.0000447,-2.307984614,0.021658093,neg,ns,0.946370565,Rrm1,Rrm1_Exon,7,102459415,102459464,102459463,102459464,50,+,AAGTTGTAAAAGCTCAGCAGCTTTGGTATGCCATCATTGAGTCTCAGACG,"Exon (Rrm1-201/Rrm1, exon 12 of 19)",7,102441695,102469771,28077,1,Rrm1-201,17720,Rrm1-201;Rrm1-207;Rrm1-205;Rrm1-203;Rrm1-202,Rrm1;Rrm1;Rrm1;Rrm1;Rrm1,0;2945;-509;-3229;-4258,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,20133,ENSMUSG00000030978,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11522,cg06308222,0.000215775,0.0000207,10.41739923,5.49E-22,gain,yes,-0.0000721,0.0000352,-2.04930628,0.041273542,neg,ns,0.041813452,0.010309036,4.056000315,0.0000632,pos,ns,4.199166173,-0.002088057,0.000354527,-5.889698827,1.01E-08,neg,yes,0.495344772,Mtss1,Mtss1_Exon,15,58947313,58947362,58947361,58947362,50,-,GAGAGACACAAACCTTCCAGCTAGGGATCTGAGATGACGGGAACATGCCG,"Exon (Mtss1-201/Mtss1, exon 12 of 15)",15,58941234,59081989,140756,2,Mtss1-201,134627,Mtss1-201;Mtss1-202;Mtss1-204;Mtss1-205;Mtss1-206;Mtss1-210;Mtss1-208;Mtss1-207;Mtss1-211,Mtss1;Mtss1;Mtss1;Mtss1;Mtss1;Mtss1;Mtss1;Mtss1;Mtss1,0;0;0;0;0;0;25177;9474;93234,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,4,211401,ENSMUSG00000022353,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26411,cg20185609,0.0000255,0.00000474,5.390527178,0.000000139,gain,yes,-0.0000165,0.00000805,-2.049230626,0.041280984,neg,ns,0.010340149,0.002358008,4.385121511,0.0000159,pos,ns,4.798627483,-0.000256668,0.0000811,-3.165160469,0.001703941,neg,ns,0.086471974,Cdx2,Cdx2_fiveUTR,5,147307270,147307319,147307270,147307271,50,+,CGTGATTAACGAGTGTTTACAAGACTCTATTAGTAATGACACAGACACCA,Promoter (<=1kb),5,147300805,147307270,6466,2,Cdx2-201,0,Cdx2-201,Cdx2,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,7,12591,ENSMUSG00000029646,conserved gene and region,5,147307218,147307280,63,*,63,8,0.682539683,1.095652174,0.126984127,0.00000033,CpGisland,TRUE,U13,Hc-P
4606,cg06878994,-0.0000196,0.0000117,-1.673320698,0.095272908,loss,ns,0.0000407,0.0000199,2.049208341,0.041283177,pos,ns,0.013295733,0.005817825,2.285344369,0.022967581,pos,ns,1.638884743,-0.000312461,0.000200075,-1.56172462,0.119373128,neg,ns,0.250273815,Mdga1,Mdga1_Intron,17,29929003,29929052,29929051,29929052,50,-,AAAGCTGTTTCAAAGTGACTCTGATAAGCAAATTGCTGGCAGCCCTGGCG,"Intron (Mdga1-205/Mdga1, intron 3 of 20)",17,29829414,29970087,140674,2,Mdga1-205,41035,Mdga1-205,Mdga1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,4,74762,ENSMUSG00000043557,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25668,cg18866765,0.00000991,0.00000387,2.563473727,0.010834548,gain,ns,-0.0000135,0.00000657,-2.048863206,0.041317145,neg,ns,0.007836387,0.001924194,4.072556236,0.0000591,pos,ns,4.228422571,-0.000283061,0.0000662,-4.277597762,0.0000252,neg,ns,0.840310963,Mcm7,Mcm7_Exon,5,138165339,138165388,138165387,138165388,50,-,GAGACAAGTGCAATGCCCAGGGCAGCGTCCAGCAATTGCCCAAGTCTCCG,"Exon (Mcm7-202/Mcm7, exon 1 of 2)",5,138164583,138172422,7840,2,Mcm7-201,7034,Cops6-201;Cops6-202;Cops6-203;Cops6-205;Cops6-204;Mcm7-201;Mcm7-202;Mcm7-208;Mcm7-205;Mcm7-209;Mcm7-203;Mcm7-204;Mcm7-210;Mcm7-207;Mcm7-206,Cops6;Cops6;Cops6;Cops6;Cops6;Mcm7;Mcm7;Mcm7;Mcm7;Mcm7;Mcm7;Mcm7;Mcm7;Mcm7;Mcm7,4268;4239;4230;4170;2562;0;0;0;4993;5878;4255;5629;6427;5273;5853,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,17220,ENSMUSG00000029730,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16110,cg24557648,-0.00000178,0.00000693,-0.2564739,0.797755053,loss,ns,0.0000241,0.0000118,2.048552148,0.04134778,pos,ns,0.012909987,0.003450687,3.741280679,0.000218094,pos,ns,3.661356534,-0.000348966,0.000118669,-2.940674408,0.003521466,neg,ns,0.880072577,Zfp407,Zfp407_Intron,18,84415164,84415213,84415164,84415165,50,+,CGAGCGTGCATTTTTAATCTGTCACCTACTAGATAAACTGCTGAATTTAA,"Intron (Zfp407-201/Zfp407, intron 2 of 2)",18,84128027,84558425,430399,2,Zfp407-201,143212,Zfp407-201;Zfp407-202;Zfp407-203,Zfp407;Zfp407;Zfp407,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,32,240476,ENSMUSG00000048410,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17854,cg21843028,-0.0000532,0.0000101,-5.29426984,0.000000227,loss,yes,0.000035,0.0000171,2.048453992,0.041357451,pos,ns,-0.001801843,0.005002482,-0.360189735,0.718950529,neg,ns,0.143300992,-0.0000944,0.000172035,-0.548568168,0.583696683,neg,ns,0.847029166,Izumo3,Izumo3_Promoter,4,92153100,92153149,92153100,92153101,50,-,CGAAGGTCTAATTTATGTGCAAGACTGAAAGCTGTTTAAACGGATAATAT,Promoter (5-6kb),4,92144338,92147234,2897,2,Izumo3-202,-5915,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,1,69314,ENSMUSG00000028533,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19661,cg04193717,-0.0000376,0.0000142,-2.64856023,0.008497419,loss,ns,0.0000493,0.0000241,2.048209069,0.041381591,pos,ns,0.017732025,0.007056626,2.512819387,0.012484302,pos,ns,1.903635741,-0.000722494,0.000242677,-2.977187957,0.003138339,neg,ns,0.569000225,Gm45296,Gm45296_Intergenic_upstream,8,100367044,100367093,100367044,100367045,50,-,CGTCTGTCTCTGTGTAATATGTGCTTTATGCATTAAATTAATGAAATTAA,Distal Intergenic,8,100438758,100438962,205,1,Gm45296-201,-71714,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20809,cg23460682,-0.000000432,0.00000709,-0.060924493,0.951458602,loss,ns,0.0000247,0.000012,2.048143931,0.041388013,pos,ns,0.00352762,0.003528675,0.999701133,0.318234852,pos,ns,0.49725226,-0.000322357,0.000121351,-2.656405219,0.008306601,neg,ns,0.90395803,Kcnd3,Kcnd3_Intergenic_upstream,3,105411219,105411268,105411219,105411220,50,+,CGCTTTTAATTTTAGATCAGGAACAATCTGATTTGGGGCCAAGGTCTTTT,Distal Intergenic,3,105452330,105674002,221673,1,Kcnd3-202,-41062,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,9,56543,ENSMUSG00000040896,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13214,cg12389511,0.0000281,0.0000083,3.380928148,0.000814921,gain,ns,-0.0000289,0.0000141,-2.047938929,0.04140823,neg,ns,-0.013138505,0.004131125,-3.180369651,0.001619679,neg,ns,2.790571144,0.000334845,0.000142069,2.356915618,0.019049062,pos,ns,0.136002831,Foxb1,Foxb1_Promoter,9,69768862,69768911,69768910,69768911,50,+,ATGTAGATTTTCTAAAGATCTAATGAATAAACAACCAGCAACTGCTGGCG,Promoter (7-8kb),9,69757710,69760940,3231,2,Foxb1-201,-7922,NA,NA,NA,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,8,21,64290,ENSMUSG00000059246,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
5974,cg01337143,0.0000442,0.00000955,4.625002554,0.00000551,gain,ns,-0.0000332,0.0000162,-2.0479385,0.041408272,neg,ns,-0.012261377,0.004752363,-2.580059259,0.010338344,neg,ns,1.985549024,0.000641016,0.000163433,3.922187198,0.000108086,pos,ns,0.722365983,Sema5b,Sema5b_Exon,16,35647178,35647227,35647178,35647179,50,-,CGATTCCTGCTGGAGGACACATGGACCACATTCATGAAGGCCCGGCTCAA,"Exon (Sema5b-205/Sema5b, exon 6 of 6)",16,35541145,35648140,106996,1,Sema5b-205,106033,Sema5b-205;Sema5b-202;Sema5b-201,Sema5b;Sema5b;Sema5b,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,5,20357,ENSMUSG00000052133,conserved gene and region,16,35647072,35647240,169,*,169,12,0.597633136,0.80861244,0.071005917,9.46E-08,CpGisland,TRUE,U11,Tr-P
8613,cg18036792,0.0000238,0.00000679,3.505114906,0.000523716,gain,ns,-0.0000236,0.0000115,-2.047875581,0.041414479,neg,ns,-0.003855285,0.003378731,-1.141045234,0.254731797,neg,ns,0.59391684,0.0000849,0.000116194,0.730553092,0.465603926,pos,ns,0.80713887,Btrc,Btrc_Exon,19,45446697,45446746,45446745,45446746,50,-,CCTTTAAATCGTGTTGAAAATTTGCTTAAAGCCTGGGCCAATTAACATCG,"Exon (Btrc-208/Btrc, exon 1 of 1)",19,45363734,45507736,144003,1,Btrc-204,82963,Btrc-204;Btrc-201;Btrc-210;Btrc-202;Btrc-203;Btrc-208;Btrc-205;Btrc-209;Gm6807-201,Btrc;Btrc;Btrc;Btrc;Btrc;Btrc;Btrc;Btrc;Gm6807,0;0;0;0;0;0;0;0;4449,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,30,98,12234,ENSMUSG00000025217,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17958,cg04739571,-0.00003,0.0000162,-1.853579362,0.064749258,loss,ns,0.0000563,0.0000275,2.047841369,0.041417854,pos,ns,-0.00521104,0.008048013,-0.64749406,0.517791444,neg,ns,0.28584513,0.0000634,0.00027677,0.228926859,0.819076715,pos,ns,0.723254234,Gm48963,Gm48963_Intergenic_downstream,14,92829226,92829275,92829274,92829275,50,+,TTAGAGATAATTAAGTGCATTCATCCAGAAATAACACATATTATACATCG,Distal Intergenic,14,92892528,92892702,175,2,Gm48963-201,63427,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9982,cg06771612,0.00000084,0.00000198,0.423492154,0.67222989,gain,ns,-0.0000069,0.00000337,-2.047796696,0.041422262,neg,ns,0.000771281,0.000987627,0.780943393,0.435431736,pos,ns,0.361079921,-0.0000695,0.000034,-2.046167267,0.041583299,neg,ns,0.949383524,Hectd1,Hectd1_Exon,12,51769264,51769313,51769312,51769313,50,+,TATCAGGGTCGTACCCTGGTGCAAGCTTGAGGTCAAATTTTCCTTCTGCG,"Exon (Hectd1-201/Hectd1, exon 25 of 43)",12,51743722,51829536,85815,2,Hectd1-201,60223,Hectd1-201;Hectd1-202;Hectd1-204,Hectd1;Hectd1;Hectd1,0;0;-4033,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,19,19,207304,ENSMUSG00000035247,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5854,cg14941078,0.000146264,0.0000141,10.37801669,7.46E-22,gain,yes,-0.000049,0.0000239,-2.047361483,0.041465222,neg,ns,0.023301733,0.007014565,3.321906953,0.001000968,pos,ns,2.99957971,-0.001128256,0.00024123,-4.677092308,0.00000435,neg,ns,0.341271763,Kirrel3,Kirrel3_Exon,9,35025089,35025138,35025089,35025090,50,-,CGCTTGCTTTATTTCCAAACAGGTTCGGAAATGAAGTCGGGAGCCGGGCT,"Exon (Kirrel3-208/Kirrel3, exon 13 of 17)",9,34486126,35035280,549155,1,Kirrel3-202,538963,Kirrel3-202;Kirrel3-206;Kirrel3-209;Kirrel3-201;Kirrel3-208;Kirrel3-205;Kirrel3-207,Kirrel3;Kirrel3;Kirrel3;Kirrel3;Kirrel3;Kirrel3;Kirrel3,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,21,67703,ENSMUSG00000032036,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11527,cg25251845,-0.00000311,0.00000301,-1.033883715,0.301996395,loss,ns,0.0000105,0.00000511,2.046850803,0.04151568,pos,ns,0.002791818,0.001495974,1.866220233,0.062954678,pos,ns,1.20097199,-0.0000816,0.0000514,-1.585499716,0.113872354,neg,ns,0.937343194,Sec23a,Sec23a_Exon,12,58997218,58997267,58997218,58997219,50,-,CGCTGGAGTTCTCCCAGAAGATCTGTGAGATTCATGTCTATTTTCTGTAC,"Exon (Sec23a-201/Sec23a, exon 7 of 20)",12,58958383,59012017,53635,2,Sec23a-201,14750,Sec23a-201;Sec23a-204,Sec23a;Sec23a,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,20334,ENSMUSG00000020986,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20599,cg23658721,-0.0000003,0.00000322,-0.093028158,0.925941284,loss,ns,0.0000112,0.00000547,2.046590816,0.041541389,pos,ns,0.001118483,0.001603724,0.697428436,0.48605743,pos,ns,0.313312414,-0.000113325,0.0000552,-2.054770405,0.040739027,neg,ns,0.944904626,Wnt3,Wnt3_Exon,11,103812483,103812532,103812483,103812484,50,+,CGCTCTTCAAGCCACCCACGGAGAGGGACCTGGTCTACTACGAGAACTCC,"Exon (Wnt3-201/Wnt3, exon 4 of 5)",11,103774150,103817957,43808,1,Wnt3-201,38333,Wnt3-201,Wnt3,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,9,22415,ENSMUSG00000000125,conserved gene and region,11,103812319,103812689,371,*,371,25,0.614555256,0.714560863,0.067385445,4.55E-15,CpGisland,TRUE,U13,Hc-P
10873,cg26457747,-0.0000873,0.0000196,-4.454662777,0.0000118,loss,ns,0.0000681,0.0000333,2.046503703,0.041550006,pos,ns,-0.01561871,0.009754143,-1.601238548,0.1103426,neg,ns,0.957256785,0.000558433,0.000335444,1.664758137,0.096971345,pos,ns,0.718573558,Neurod6,Neurod6_Intergenic_upstream,6,55700690,55700739,55700738,55700739,50,+,ACTGGCAGGGCTATCGTTAATTTGAAAGTGCTGTGGTCTAGTGTTAATCG,Distal Intergenic,6,55677822,55681263,3442,2,Neurod6-201,-19427,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,16,11922,ENSMUSG00000037984,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6923,cg04708453,0.0000226,0.0000082,2.755472773,0.00620744,gain,ns,-0.0000285,0.0000139,-2.046423091,0.041557981,neg,ns,-0.001494928,0.004080026,-0.366401568,0.71431539,neg,ns,0.146109993,-0.000195393,0.000140312,-1.392562382,0.164750158,neg,ns,0.808049554,Rims2,Rims2_Exon,15,39585645,39585694,39585645,39585646,50,-,CGGACAGTGATGTAAGTGATATATCTGCGGTTTCAAGGACTAGTAGTGCT,"Exon (Rims2-202/Rims2, exon 21 of 27)",15,39198332,39681940,483609,1,Rims2-202,387313,Rims2-202;Rims2-205;Rims2-201;Rims2-206;Rims2-208;Rims2-209,Rims2;Rims2;Rims2;Rims2;Rims2;Rims2,0;0;0;0;0;-1013,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,16,19,116838,ENSMUSG00000037386,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26768,cg09294291,0.0000123,0.00000473,2.593197128,0.009959817,gain,ns,0.0000164,0.00000803,2.046324536,0.041567733,pos,ns,0.000999693,0.002351692,0.425095152,0.671062231,pos,ns,0.173237204,-0.0000961,0.0000809,-1.187902006,0.235781347,neg,ns,0.885564015,Iqsec2,Iqsec2_Exon,X,152209217,152209266,152209217,152209218,50,-,CGCCAGCTGGTGTATGAGGCTGATGGCTGCAGCCCCCATGGGACCCTGAA,"Exon (Iqsec2-207/Iqsec2, exon 5 of 15)",20,152144268,152225235,80968,1,Iqsec2-207,64949,Iqsec2-207;Iqsec2-202;Iqsec2-203;Iqsec2-201,Iqsec2;Iqsec2;Iqsec2;Iqsec2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,16,245666,ENSMUSG00000041115,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16510,cg22820737,0.0000403,0.00000572,7.04512039,1.20E-11,gain,yes,-0.0000199,0.00000971,-2.04626776,0.041573352,neg,ns,-0.000787047,0.002844569,-0.276684149,0.78220703,neg,ns,0.106678285,0.000154663,0.0000978,1.581023716,0.114892339,pos,ns,0.840694259,Sfxn5,Sfxn5_Intron,6,85252514,85252563,85252562,85252563,50,-,ACTGGAGAATTAATTAAGGTCTAAGCAAATTAATTACCAGTCCCCAATCG,"Intron (Sfxn5-201/Sfxn5, intron 10 of 13)",6,85213049,85333422,120374,2,Sfxn5-201,80859,Sfxn5-201;Sfxn5-205;Sfxn5-202,Sfxn5;Sfxn5;Sfxn5,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,9,94282,ENSMUSG00000033720,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12808,cg07959695,-0.0000197,0.00000637,-3.098475264,0.002123396,loss,ns,-0.0000221,0.0000108,-2.046102934,0.041589668,neg,ns,-0.011628066,0.003170017,-3.668139862,0.000287477,neg,ns,3.541397005,0.000195111,0.000109017,1.789740627,0.074471573,pos,ns,0.82641004,Tln2,Tln2_Exon,9,67224058,67224107,67224058,67224059,50,-,CGGACAAGATTGTCTGAGGCTCTTTTCACAGCATTTCCTGCCGCCTGGAG,"Exon (Tln2-202/Tln2, exon 57 of 58)",9,67217087,67559703,342617,2,Tln2-202,335596,Tln2-202;Tln2-209;Tln2-204;Tln2-207;Tln2-205;Tln2-201;Tln2-208,Tln2;Tln2;Tln2;Tln2;Tln2;Tln2;Tln2,0;0;0;0;0;0;7300,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,70549,ENSMUSG00000052698,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11744,cg16323498,-0.00000437,0.00000144,-3.045859154,0.002519398,loss,ns,0.00000499,0.00000244,2.046086325,0.041591313,pos,ns,0.00209514,0.000714465,2.932458685,0.003613364,pos,ns,2.442088253,-0.0000566,0.0000246,-2.305058645,0.021823568,neg,ns,0.050246318,Atpaf2,Atpaf2_Exon,11,60417754,60417803,60417754,60417755,50,+,CGTGGCCACCAGCCTGCTCTACAGCGGCTCCAAGTTCCGCGGCCACCAGA,Promoter (<=1kb),11,60407373,60418457,11085,2,Atpaf2-203,654,Atpaf2-201;Atpaf2-207;Atpaf2-204;Atpaf2-202;Atpaf2-205;Atpaf2-203;Atpaf2-206;Gid4-202;Gid4-201,Atpaf2;Atpaf2;Atpaf2;Atpaf2;Atpaf2;Atpaf2;Atpaf2;Gid4;Gid4,-703;-655;-736;-712;-719;0;-718;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,246782,ENSMUSG00000042709,mapped to different genes,11,60417486,60418014,529,*,529,59,0.748582231,0.813570367,0.111531191,4.85E-48,CpGisland,TRUE,U1,Pr-A
19229,cg26598122,0.00000419,0.00000199,2.107793075,0.035851467,gain,ns,-0.00000692,0.00000338,-2.045992952,0.041600559,neg,ns,0.004395839,0.000990558,4.437742416,0.0000126,pos,ns,4.897931658,-0.000113654,0.0000341,-3.336376033,0.000952015,neg,ns,0.953159446,Msl1,Msl1_threeUTR,11,98800346,98800395,98800346,98800347,50,+,CGGGAATCCTCTCCAAAGAAGGAGGAGACTGTAGCAAGTAAGGCATAGAG,3' UTR,11,98795516,98807859,12344,1,Msl1-201,4830,Casc3-201;Msl1-201;Msl1-203;Msl1-204;Msl1-202;Msl1-205;Msl1-206,Casc3;Msl1;Msl1;Msl1;Msl1;Msl1;Msl1,-4510;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,13,74026,ENSMUSG00000052915,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19167,cg09069545,0.0000109,0.00000569,1.905842963,0.057595369,gain,ns,-0.0000198,0.00000967,-2.04583892,0.041615815,neg,ns,0.004163048,0.002834355,1.468781584,0.142906039,pos,ns,0.84494942,-0.000137189,0.0000975,-1.407451193,0.160295522,neg,ns,0.827315707,Zc3h14,Zc3h14_Exon,12,98752839,98752888,98752887,98752888,50,+,GACAGAGGATCTGTCCCTGTTTCTAGGGAACAACACAATTCGATTCACCG,"Exon (Zc3h14-203/Zc3h14, exon 3 of 15)",12,98746964,98787753,40790,1,Zc3h14-203,5875,Zc3h14-203;Zc3h14-210;Zc3h14-202;Zc3h14-204;Zc3h14-207;Zc3h14-212;Zc3h14-208,Zc3h14;Zc3h14;Zc3h14;Zc3h14;Zc3h14;Zc3h14;Zc3h14,0;0;0;0;5839;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,75553,ENSMUSG00000021012,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24096,cg27144703,0.0000615,0.00000465,13.24331804,4.92E-32,gain,yes,-0.0000162,0.0000079,-2.045675495,0.041632006,neg,ns,0.005948279,0.002313131,2.571527113,0.010591011,pos,ns,1.975062584,0.00002,0.0000795,0.250874713,0.802077175,pos,ns,0.151130383,Zic2,Zic2_Exon,14,122476482,122476531,122476530,122476531,50,-,GAAGAGCTGCAACAAAACTTTCAGCACCATGCACGAGCTGGTGACACACG,"Exon (Zic2-201/Zic2, exon 1 of 3)",14,122475435,122479852,4418,1,Zic2-201,1047,Zic2-201;Zic2-202,Zic2;Zic2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,7,22772,ENSMUSG00000061524,conserved gene and region,14,122476515,122476600,86,*,86,9,0.662790698,0.955555556,0.104651163,0.000000248,CpGisland,TRUE,U13,Hc-P
9313,cg17604024,0.0000154,0.0000047,3.286654564,0.001130208,gain,ns,-0.0000163,0.00000798,-2.04543345,0.041655997,neg,ns,-0.002993866,0.002338332,-1.280342299,0.201381957,neg,ns,0.695979444,-0.0000588,0.0000804,-0.731064908,0.46529171,neg,ns,0.822484281,Nr4a3,Nr4a3_Exon,4,48071009,48071058,48071057,48071058,50,-,AAGTTTGTGTTCTGCAATGGACTTGTCCTGCATCGACTTCAGTGCCTTCG,"Exon (Nr4a3-201/Nr4a3, exon 7 of 8)",4,48045153,48086445,41293,1,Nr4a3-201,25856,Nr4a3-201;Nr4a3-203,Nr4a3;Nr4a3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,20,18124,ENSMUSG00000028341,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15600,cg10039119,0.0000156,0.00000709,2.198478757,0.028653729,gain,ns,-0.0000246,0.000012,-2.045292983,0.041669925,neg,ns,-0.00316644,0.003526402,-0.897923781,0.369923032,neg,ns,0.431888628,-0.0000335,0.000121273,-0.276140296,0.782624312,neg,ns,0.847994734,Inpp4b,Inpp4b_Exon,8,82121310,82121359,82121310,82121311,50,+,CGCCTTGCTGCTTGTCAGCTCACACCTGCTAGTTGTGTGGCTTATTTTAA,"Exon (Inpp4b-215/Inpp4b, exon 25 of 25)",8,81342562,82122556,779995,1,Inpp4b-215,778748,Inpp4b-215;Inpp4b-207;Inpp4b-212;Inpp4b-201;Inpp4b-203;Inpp4b-209;Inpp4b-202,Inpp4b;Inpp4b;Inpp4b;Inpp4b;Inpp4b;Inpp4b;Inpp4b,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,2,234515,ENSMUSG00000037940,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14518,cg02514296,-0.00000956,0.00000422,-2.265486753,0.024172482,loss,ns,0.0000147,0.00000717,2.045276913,0.041671519,pos,ns,0.004347381,0.00210031,2.069875672,0.039291971,pos,ns,1.405696182,-0.000132086,0.0000722,-1.828698574,0.068405459,neg,ns,0.932609282,Ptprd,Ptprd_Exon,4,76139272,76139321,76139272,76139273,50,-,CGCTTCAGAACTAAGCACTTACCAATAGATTCTGGAGATTTAAATACGGA,"Exon (Ptprd-206/Ptprd, exon 6 of 36)",4,75941238,76449980,508743,2,Ptprd-206,310659,Ptprd-206;Ptprd-213;Ptprd-220;Ptprd-203;Ptprd-217;Ptprd-218;Ptprd-219;Ptprd-201;Ptprd-205;Ptprd-202,Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,13,32,19266,ENSMUSG00000028399,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15697,cg13227584,-0.00000955,0.0000059,-1.619003251,0.106463443,loss,ns,0.0000205,0.00001,2.045001905,0.0416988,pos,ns,0.007588924,0.002935333,2.585370791,0.010183786,pos,ns,1.992090725,-0.000250798,0.000100946,-2.484481562,0.013501642,neg,ns,0.915109791,Phip,Phip_threeUTR,9,82869907,82869956,82869907,82869908,50,+,CGTAAAAAGTGCAGAAAAAACACAATGTGCAATGAGACCACTGTATAAAA,3' UTR,9,82866159,82975516,109358,2,Phip-201,105560,Phip-201;Phip-213,Phip;Phip,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,13,83946,ENSMUSG00000032253,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23835,cg27519177,-0.00000944,0.00000764,-1.236494689,0.217210724,loss,ns,0.0000265,0.000013,2.044925594,0.041706372,pos,ns,0.00654799,0.003800318,1.723011002,0.085883741,pos,ns,1.066089049,-0.0000772,0.000130693,-0.591036335,0.554926757,neg,ns,0.130341537,En1,En1_Promoter,1,120600057,120600106,120600057,120600058,50,+,CGGGCTCCACTACATGAAAGGTAAAATGAATTACCGACGTTAAGCCGTCA,Promoter (2-3kb),1,120602418,120607992,5575,1,En1-201,-2312,En1-201,En1,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,23,36,13798,ENSMUSG00000058665,conserved gene and region,1,120599977,120600103,127,*,127,10,0.503937008,1.241446725,0.078740158,0.000000615,CpGisland,TRUE,U13,Hc-P
8930,cg01841970,-0.00000936,0.00000545,-1.717390255,0.086906589,loss,ns,0.0000189,0.00000926,2.044838583,0.041715008,pos,ns,0.005665779,0.002711892,2.089234775,0.037501717,pos,ns,1.425948843,-0.000284275,0.0000933,-3.048137957,0.002500928,neg,ns,0.901216424,Gm13469,Gm13469_Intergenic_downstream,2,46327097,46327146,46327097,46327098,50,+,CGCCAGCATAACAAGGCATATCCATGGCAGCAAATGTGATTTATGACAGG,Distal Intergenic,2,46406220,46406569,350,2,Gm13469-201,79423,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,27,383690,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5395,cg16811337,-0.00000143,0.00000193,-0.740808459,0.459370338,loss,ns,-0.00000672,0.00000329,-2.044683198,0.041730435,neg,ns,0.000319117,0.000962437,0.331571351,0.740436998,pos,ns,0.130511889,0.0000334,0.0000331,1.010567126,0.313011771,pos,ns,0.952137778,Gtf2e2,Gtf2e2_Exon,8,33776015,33776064,33776015,33776016,50,-,CGACAGGGTATTTCTTCCATGCAGGAATCTGGACCAAAGAAAGTGGTGCG,"Exon (Gtf2e2-202/Gtf2e2, exon 7 of 8)",8,33731833,33777164,45332,1,Gtf2e2-202,44182,Gtf2e2-202;Gtf2e2-201;Gtf2e2-203;Gtf2e2-204,Gtf2e2;Gtf2e2;Gtf2e2;Gtf2e2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,68153,ENSMUSG00000031585,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16160,cg06577264,-0.00000916,0.00000547,-1.674960756,0.09495034,loss,ns,0.000019,0.00000929,2.044606257,0.041738075,pos,ns,0.004662122,0.002722003,1.712754557,0.087757596,pos,ns,1.056715281,-0.000144373,0.0000936,-1.542293406,0.124022462,neg,ns,0.879401709,Zfp407,Zfp407_Intron,18,84542412,84542461,84542460,84542461,50,-,CCTTCACGCAGGCATCTACAGGCAAATTATCGGCCTCTTCTTCAAAACCG,"Intron (Zfp407-201/Zfp407, intron 2 of 2)",18,84128027,84558425,430399,2,Zfp407-201,15964,Zfp407-201;Zfp407-202;Zfp407-204,Zfp407;Zfp407;Zfp407,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,32,240476,ENSMUSG00000048410,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27140,cg17290792,-0.0000203,0.00000543,-3.733771766,0.000224412,loss,ns,0.0000189,0.00000922,2.044557691,0.041742898,pos,ns,0.00000319,0.002701884,0.001180746,0.99905866,pos,ns,0.000409011,-0.000103673,0.0000929,-1.115754417,0.265391413,neg,ns,0.88953898,Gm14219,Gm14219_Intergenic_downstream,2,159250342,159250391,159250390,159250391,50,+,GCTGCAACTGTTTGTGCATACAATTTTGCACCTGGGAGTAATCGTGGGCG,Distal Intergenic,2,159456170,159456457,288,2,Gm14219-201,206066,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,5,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3451,cg14887878,0.000113412,0.0000173,6.547455443,2.43E-10,gain,yes,-0.0000602,0.0000294,-2.04447886,0.041750728,neg,ns,0.016760022,0.008621116,1.944066367,0.052791931,pos,ns,1.277432456,-0.000497167,0.000296479,-1.676901023,0.094569863,neg,ns,0.534146908,Bcl11a,Bcl11a_Intron,11,24091707,24091756,24091755,24091756,50,+,TCTGATCCCAGCAGGGAATAGGTGAGCTTCATTTGCCTTTACAATAGGCG,"Intron (Bcl11a-201/Bcl11a, intron 2 of 4)",11,24078056,24173194,95139,1,Bcl11a-201,13651,Bcl11a-201;Bcl11a-203;Bcl11a-205;Bcl11a-202;Bcl11a-204,Bcl11a;Bcl11a;Bcl11a;Bcl11a;Bcl11a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,98,14025,ENSMUSG00000000861,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4102,cg13890715,0.0000449,0.0000147,3.058285076,0.002420189,gain,ns,0.0000509,0.0000249,2.044471832,0.041751426,pos,ns,0.017430759,0.007300812,2.387509811,0.01756181,pos,ns,1.755430718,-0.000488286,0.000251074,-1.944786363,0.052704781,neg,ns,0.603186454,Gm12070,Gm12070_Intergenic_downstream,11,26806779,26806828,26806779,26806780,50,-,CGCTCCTATCAATGTCCCAGCCATGGAGGTGACTTCGAGTGCTCAGAAGC,Distal Intergenic,11,26786633,26787634,1002,1,Gm12070-201,20195,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,8,654472,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18385,cg16970230,-0.0000144,0.000018,-0.79595772,0.426665689,loss,ns,0.0000626,0.0000306,2.044467255,0.041751881,pos,ns,0.003260226,0.008973939,0.363299367,0.716628876,pos,ns,0.144705696,0.000174134,0.000308613,0.564247409,0.572993769,pos,ns,0.62679642,Gm4808,Gm4808_Intergenic_upstream,12,95057140,95057189,95057188,95057189,50,+,TTCATGAGTTAGCCAAATGTATATTGTTGTCGAAATTACTTGTCAAAACG,Distal Intergenic,12,94914480,94915682,1203,2,Gm4808-201,-141458,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,217786,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4414,cg21142942,0.0000321,0.000005,6.40768808,5.49E-10,gain,yes,-0.0000174,0.0000085,-2.044311658,0.041767339,neg,ns,-0.00343276,0.002490163,-1.378528652,0.16903412,neg,ns,0.772025623,-0.000035,0.0000856,-0.408292681,0.683340683,neg,ns,0.835340978,Brpf3,Brpf3_threeUTR,17,28831337,28831386,28831385,28831386,50,-,GAAGACCGCGGAGACCTGGAGCCCTTGGAGCTGGTGTGGGCCAAGTGCCG,3' UTR,17,28801090,28839949,38860,1,Brpf3-201,30247,Brpf3-201;Brpf3-216;Brpf3-217;Brpf3-219;Brpf3-210;Brpf3-218;Brpf3-212;Brpf3-209;Brpf3-207;Brpf3-205;Brpf3-213;Brpf3-214;Brpf3-215;Brpf3-206;Brpf3-203,Brpf3;Brpf3;Brpf3;Brpf3;Brpf3;Brpf3;Brpf3;Brpf3;Brpf3;Brpf3;Brpf3;Brpf3;Brpf3;Brpf3;Brpf3,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,7,7,268936,ENSMUSG00000063952,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11911,cg02785457,0.000116284,0.0000158,7.372435964,1.54E-12,gain,yes,-0.0000548,0.0000268,-2.044198013,0.041778633,neg,ns,0.014170727,0.007850275,1.805124918,0.072025303,pos,ns,1.142514904,-0.000462491,0.00026997,-1.713116814,0.087690852,neg,ns,0.173647675,Tank,Tank_Intergenic_downstream,2,61656449,61656498,61656497,61656498,50,+,TAATTATCCGTCTCATTTGAGAAGAGCAGCATTTGAGGCAGCAGCGTTCG,Distal Intergenic,2,61643831,61649977,6147,1,Tank-211,12618,Tank-205;Tank-201;Tank-206;Tank-203;Tank-204;Tank-202;Tank-208,Tank;Tank;Tank;Tank;Tank;Tank;Tank,0;0;0;0;0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,17,21353,ENSMUSG00000064289,mapped to different genes,2,61656429,61656917,489,*,489,60,0.707566462,0.985887097,0.122699387,1.21E-51,CpGisland,TRUE,U3,Pr-B
19618,cg13925106,-0.00000149,0.00000346,-0.430186815,0.667358652,loss,ns,-0.000012,0.00000587,-2.044014899,0.041796836,neg,ns,-0.002596349,0.001721144,-1.508502191,0.132444505,neg,ns,0.877966054,0.00006,0.0000592,1.014520414,0.311125649,pos,ns,0.911968336,Dip2b,Dip2b_Exon,15,100151141,100151190,100151189,100151190,50,-,TTCCACACAGACACATCTTCGGCCTCTGAGGATGAGGGCTCTCTGAGACG,"Exon (Dip2b-202/Dip2b, exon 5 of 38)",15,100038664,100219473,180810,1,Dip2b-202,112477,Dip2b-202;Dip2b-201,Dip2b;Dip2b,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,8,239667,ENSMUSG00000023026,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25806,cg11436350,0.0000346,0.00000359,9.636053392,2.15E-19,gain,yes,-0.0000125,0.0000061,-2.043906992,0.041807566,neg,ns,0.005570299,0.001786179,3.118555886,0.001988023,pos,ns,2.701578679,-0.000167184,0.0000614,-2.721692993,0.006862083,neg,ns,0.113228102,Uncx,Uncx_Intergenic_downstream,5,139550247,139550296,139550247,139550248,50,+,CGCTGGCTGCACACCCGTGTCCTTAAGGTGAAATTACTGATTTACTTAAA,Distal Intergenic,5,139543898,139545268,1371,1,Uncx-202,6349,Uncx-201;Uncx-202,Uncx;Uncx,0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,59,88,22255,ENSMUSG00000029546,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
17671,cg15795724,-0.00000368,0.00000148,-2.489084098,0.013331559,loss,ns,0.00000513,0.00000251,2.043604588,0.041837649,pos,ns,0.000346242,0.000735503,0.470755276,0.63814657,pos,ns,0.195079561,0.0000645,0.0000253,2.550789463,0.011228277,pos,ns,0.051300776,Ssbp2,Ssbp2_Exon,13,91371026,91371075,91371026,91371027,50,+,CGGAACAGCAAATGCTATTCAGCCCGAGCAGTTTCAAGCCGCCCGAGCTG,"Exon (A830009L08Rik-201/A830009L08Rik-201, exon 3 of 3)",13,91460283,91688866,228584,1,Ssbp2-209,-89208,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,18,66970,ENSMUSG00000003992,conserved gene and region,13,91370942,91371164,223,*,223,20,0.6367713,0.906504065,0.089686099,1.36E-14,CpGisland,TRUE,U1,Pr-A
4208,cg22285368,-0.00000791,0.00000343,-2.307275149,0.021698115,loss,ns,0.0000119,0.00000583,2.043596529,0.041838451,pos,ns,0.003403399,0.001707028,1.993757071,0.047054503,pos,ns,1.327398812,-0.000130769,0.0000587,-2.227571392,0.02662667,neg,ns,0.927474918,Gm7729,Gm7729_Intergenic_downstream,18,27617160,27617209,27617160,27617161,50,-,CGTGAAATGATGTTAACAAGCAGAAAACAAATTCTATAATGAAGGACTTC,Distal Intergenic,18,27598644,27599756,1113,1,Gm7729-201,18565,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,22,665646,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19119,cg02047891,-0.000021,0.00000671,-3.134159803,0.001888374,loss,ns,0.0000233,0.0000114,2.043590821,0.041839019,pos,ns,0.007533616,0.003339263,2.256071594,0.024762761,pos,ns,1.606200938,-0.000330934,0.000114837,-2.88177295,0.004230464,neg,ns,0.845376918,Gm765,Gm765_Intron,6,98510740,98510789,98510788,98510789,50,+,AAAATAACTGTACAGTGATCAGCTGGTTAAGTACAGTTAACCAGATGTCG,"Intron (Gm44196-202/Gm44196-202, intron 2 of 4)",6,98235708,98342754,107047,2,Gm765-201,-167986,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,10,330390,ENSMUSG00000090667,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17853,cg03182098,-0.00000679,0.00000397,-1.711233462,0.088038302,loss,ns,-0.0000138,0.00000674,-2.043351062,0.041862883,neg,ns,0.000803559,0.001974062,0.407058668,0.684245817,pos,ns,0.164787849,-0.0000955,0.0000679,-1.407150013,0.160384717,neg,ns,0.922625783,Irx5,Irx5_Exon,8,92152947,92152996,92152995,92152996,50,-,TCTATTCAAATGCTAACAATTTTCTTCTCACAAGCTAAAACATTTGTCCG,"Exon (Gm45332-201/Gm45332-201, exon 2 of 2)",8,92357625,92376286,18662,1,Irx5-202,-204678,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,30,54352,ENSMUSG00000031737,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11945,cg08633308,-0.00000603,0.00000554,-1.089415941,0.276816645,loss,ns,0.0000192,0.0000094,2.043281686,0.041869791,pos,ns,0.006079787,0.002755119,2.20672446,0.028066066,pos,ns,1.551818459,-0.000218133,0.0000947,-2.302238248,0.021984118,neg,ns,0.915795834,Psmd14,Psmd14_Intron,2,61772207,61772256,61772255,61772256,50,-,TAGGAATTTCTTTTCCAGAGCTAAAATTGACATTTTATAAATAATTTCCG,"Intron (Psmd14-201/Psmd14, intron 7 of 11)",2,61711694,61800376,88683,1,Psmd14-201,60513,Psmd14-201;Psmd14-208;Psmd14-202,Psmd14;Psmd14;Psmd14,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,9,59029,ENSMUSG00000026914,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4617,cg13425955,-0.000117718,0.000015,-7.825868389,8.02E-14,loss,yes,0.0000522,0.0000256,2.043217171,0.041876215,pos,ns,0.027391454,0.007486647,3.658707767,0.000297806,pos,ns,3.52606624,-0.000939975,0.000257465,-3.650881367,0.000306641,neg,ns,0.379631156,Ntm,Ntm_Promoter,9,29963180,29963229,29963228,29963229,50,-,CTGCAATCATTGGTTCTAATCCAAGGATTGACAGAGCTACAACACACGCG,Promoter (<=1kb),9,29941548,29963141,21594,2,Ntm-209,-88,Ntm-201;Ntm-204;Ntm-210;Ntm-207;Ntm-209,Ntm;Ntm;Ntm;Ntm;Ntm,0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,5,32,235106,ENSMUSG00000059974,conserved gene but different region,9,29963224,29963231,8,*,8,4,1,2,0.5,0.000000563,CpGisland,TRUE,U15,NS
21144,cg05165194,0.00010141,0.0000154,6.603280755,1.75E-10,gain,yes,0.0000533,0.0000261,2.042675814,0.041930157,pos,ns,0.041730702,0.007643577,5.459577444,9.79E-08,pos,ns,7.009016795,-0.001215473,0.000262862,-4.62399677,0.00000553,neg,ns,0.291300289,Gm17304,Gm17304_Intron,5,106560748,106560797,106560796,106560797,50,+,GCTGCTCGCTCCATGATGAGATGCTAAATGAAAAGCTGGTGCGACACACG,"Intron (Gm28050-202/Gm28050-202, intron 1 of 2)",5,106609098,106609201,104,1,Gm17304-201,-48301,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,35,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
27589,cg25003767,-0.00000297,0.00000369,-0.803457565,0.42232594,loss,ns,-0.0000128,0.00000628,-2.04252524,0.041945171,neg,ns,-0.004322635,0.001838423,-2.351273716,0.019335099,neg,ns,1.713653595,0.000104817,0.0000632,1.657884235,0.09835236,pos,ns,0.931031265,Uhmk1,Uhmk1_Exon,1,170212429,170212478,170212477,170212478,50,-,AAGAGCAATTCCGAAACACTGACATCCAGGAGTTCAAGCAACAGACAGCG,"Exon (Uhmk1-203/Uhmk1, exon 2 of 8)",1,170193420,170214734,21315,2,Uhmk1-203,2256,Uhmk1-203;Uhmk1-201;Uhmk1-202,Uhmk1;Uhmk1;Uhmk1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,16589,ENSMUSG00000026667,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19994,cg21194951,0.0000149,0.00000613,2.433106665,0.015535019,gain,ns,-0.0000213,0.0000104,-2.042506175,0.041947072,neg,ns,-0.007192653,0.003050792,-2.357634569,0.019012881,neg,ns,1.72095207,-0.00000537,0.000104916,-0.05117701,0.959217431,neg,ns,0.8416136,Il18bp,Il18bp_threeUTR,7,102014900,102014949,102014900,102014901,50,+,CGGGGATGGATCTTTTCTAAATGTTATTACTTGTAAATAAAGTCTATTTT,3' UTR,7,102014885,102018155,3271,2,Il18bp-203,3206,Il18bp-203;Il18bp-201;Il18bp-202;Il18bp-204;Numa1-201;Numa1-202;Rnf121-202;Rnf121-201,Il18bp;Il18bp;Il18bp;Il18bp;Numa1;Numa1;Rnf121;Rnf121,0;0;0;0;0;0;50209;50520,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,2,16068,ENSMUSG00000070427,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11279,cg01240843,0.0000135,0.0000204,0.664238493,0.507031429,gain,ns,0.0000707,0.0000346,2.042377711,0.041959886,pos,ns,0.030824363,0.010145792,3.038142784,0.002582872,pos,ns,2.58789705,-0.00190253,0.000348913,-5.45273471,0.000000101,neg,yes,0.757395495,Mipol1,Mipol1_Intron,12,57317198,57317247,57317198,57317199,50,+,CGAGATGCAATTAACAGTAGATTTTACATTTAATAAAAAGAAAGAAGCAT,"Intron (Mipol1-207/Mipol1, intron 3 of 6)",12,57230434,57354220,123787,1,Mipol1-207,86764,Mipol1-207;Mipol1-206;Mipol1-205;Mipol1-201;Mipol1-209;Mipol1-208;Mipol1-203,Mipol1;Mipol1;Mipol1;Mipol1;Mipol1;Mipol1;Mipol1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,7,73490,ENSMUSG00000047022,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19998,cg25176901,0.000107612,0.0000126,8.513391438,7.39E-16,gain,yes,-0.0000439,0.0000215,-2.042306815,0.041966958,neg,ns,-0.008270692,0.006291225,-1.314639293,0.189602914,neg,ns,0.722154991,0.000423052,0.000216355,1.955361829,0.05143857,pos,ns,0.412033494,Nhlh2,Nhlh2_Intergenic_downstream,3,102023438,102023487,102023486,102023487,50,+,GGGGGCAGGTGTTGCTCCAGTCGAGCGAATGGAACCAAATTACAGGCCCG,Distal Intergenic,3,102010155,102014506,4352,1,Nhlh2-203,13283,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,5,18072,ENSMUSG00000048540,conserved gene and region,3,102023357,102023691,335,*,335,30,0.680597015,0.806128178,0.089552239,1.24E-21,CpGisland,TRUE,U3,Pr-B
16341,cg08938906,0.000140697,0.0000088,15.99223989,2.14E-42,gain,yes,-0.0000305,0.0000149,-2.04195552,0.04200202,neg,ns,-0.001342138,0.004378769,-0.306510401,0.759421827,neg,ns,0.119516925,0.000032,0.000150586,0.212195227,0.832094181,pos,ns,0.490896326,Rfx4,Rfx4_fiveUTR,10,84756167,84756216,84756215,84756216,50,+,TTGACGGGTTTGGCTTTGCCCGGCTGGATTACTGAGTGTCCCCTTGCTCG,Promoter (<=1kb),10,84756062,84906144,150083,1,Rfx4-202,105,Rfx4-202,Rfx4,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,7,13,71137,ENSMUSG00000020037,mapped to different genes,10,84756044,84756276,233,*,233,17,0.557939914,1.02510352,0.072961373,5.60E-11,CpGisland,TRUE,U13,Hc-P
16685,cg08615333,-0.00000779,0.000013,-0.601130881,0.548192107,loss,ns,-0.0000449,0.000022,-2.041896106,0.042007952,neg,ns,-0.011548795,0.006449085,-1.790764938,0.074306604,neg,ns,1.128972588,0.000425262,0.000221783,1.91746371,0.056097826,pos,ns,0.430165106,Tgfb3,Tgfb3_fiveUTR,12,86078053,86078102,86078101,86078102,50,-,AGGTGCATGAACTCACTGCACTGCGAGAGCTTCAGGACTTCCAGGAAGCG,Promoter (<=1kb),12,86056745,86079041,22297,2,Tgfb3-201,939,Ift43-204;Ift43-201;Ift43-205;Ift43-206;Ift43-207;Tgfb3-201,Ift43;Ift43;Ift43;Ift43;Ift43;Tgfb3,-4439;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,3,21809,ENSMUSG00000021253,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12008,cg06753411,-0.000000146,0.00000155,-0.094035526,0.925141685,loss,ns,0.00000538,0.00000263,2.041886916,0.04200887,pos,ns,0.002181121,0.000771465,2.827245021,0.005000363,pos,ns,2.300998454,-0.0000688,0.0000265,-2.591483973,0.010008463,neg,ns,0.961515945,Dpp4,Dpp4_Intron,2,62334744,62334793,62334792,62334793,50,+,ATAAAATGTTTTCAGCTGGGGCCCCCTTTGATACAAAATATAGCAAACCG,"Intron (Dpp4-201/Dpp4, intron 23 of 25)",2,62330073,62412231,82159,2,Dpp4-201,77438,Dpp4-201;Dpp4-206,Dpp4;Dpp4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,6,13482,ENSMUSG00000035000,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25239,cg06553764,0.00000972,0.00000744,1.306267195,0.192430074,gain,ns,-0.0000258,0.0000126,-2.041777192,0.042019827,neg,ns,-0.004333104,0.00370202,-1.170470376,0.242710727,neg,ns,0.614911028,0.000133286,0.000127312,1.04692278,0.295950781,pos,ns,0.896678672,Cstf2,Cstf2_Exon,X,134072662,134072711,134072710,134072711,50,+,TGACCTCTTCACACAGGGCAGAGAACATGGATGATATGGGCATCTGTCCG,"Exon (Cstf2-207/Cstf2, exon 7 of 12)",20,134059187,134086046,26860,1,Cstf2-203,13475,Cstf2-203;Cstf2-201;Cstf2-202;Cstf2-207;Cstf2-208;Cstf2-204,Cstf2;Cstf2;Cstf2;Cstf2;Cstf2;Cstf2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,108062,ENSMUSG00000031256,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17098,cg01393027,0.0000163,0.00000807,2.016359501,0.044624545,gain,ns,0.000028,0.0000137,2.041723974,0.042025143,pos,ns,0.006022116,0.00401444,1.500113471,0.134602752,pos,ns,0.870946062,0.0000168,0.000138056,0.121549147,0.90333484,pos,ns,0.810413239,Gm45497,Gm45497_Promoter,8,88382515,88382564,88382515,88382516,50,-,CGGCCGAGGCTCTAATGAAAGCCAGATAAAGGGATGGCTGGAATCAGAAA,Promoter (8-9kb),8,88391121,88392228,1108,1,Gm45497-201,-8606,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,3,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20984,cg10153029,-0.000015,0.00000349,-4.294547519,0.0000235,loss,ns,-0.0000121,0.00000593,-2.041387463,0.042058768,neg,ns,-0.005520761,0.001737392,-3.177612919,0.00163466,neg,ns,2.786572631,0.00010192,0.0000597,1.705801639,0.089046642,pos,ns,0.950451815,Tanc2,Tanc2_Exon,11,105914002,105914051,105914050,105914051,50,+,TCCTCTCCTACAACTTTTTGTTTTCTCCTTTCTTTGAAGGTTGTCAGACG,"Exon (Tanc2-204/Tanc2, exon 8 of 12)",11,105589991,105929304,339314,1,Tanc2-202,324011,Tanc2-202;Tanc2-204;Tanc2-201;Tanc2-205,Tanc2;Tanc2;Tanc2;Tanc2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,15,20,77097,ENSMUSG00000053580,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12314,cg05134912,0.0000229,0.00000686,3.343384424,0.000929113,gain,ns,-0.0000238,0.0000116,-2.041288651,0.042068646,neg,ns,0.019738896,0.003412474,5.784336273,1.78E-08,pos,ns,7.749926785,-0.0000321,0.000117355,-0.273225331,0.784861942,neg,ns,0.929818121,Wdr7,Wdr7_Intron,18,63894273,63894322,63894273,63894274,50,+,CGCTGACTCTAATGTGACATGTTTATTGCCTTAACTAACAACTCATTAGC,"Intron (Wdr7-201/Wdr7, intron 21 of 27)",18,63708685,63989776,281092,1,Wdr7-201,185588,Gm19076-201;Wdr7-201;Wdr7-204,Gm19076;Wdr7;Wdr7,4709;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,11,104082,ENSMUSG00000040560,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7008,cg17712210,-0.0000349,0.0000107,-3.25012246,0.001280368,loss,ns,0.0000372,0.0000182,2.041261786,0.042071332,pos,ns,0.003665507,0.005345948,0.685660746,0.493439495,pos,ns,0.306766092,-0.000128924,0.000183847,-0.701260569,0.48366649,neg,ns,0.824862191,Gm7382,Gm7382_Promoter,15,40533975,40534024,40533975,40533976,50,+,CGGGAAGGCAGGCAGAGCAAATTGAAAGCGTCTCCATGTTTGCAGAATTG,Promoter (3-4kb),15,40537321,40538425,1105,1,Gm7382-201,-3297,Gm7382-201,Gm7382,-3297,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,17,22,664872,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24751,cg17534919,-0.00000522,0.00000183,-2.853348429,0.004617178,loss,ns,0.00000634,0.00000311,2.04078596,0.042118928,pos,ns,0.001575223,0.000910046,1.73092743,0.084459731,pos,ns,1.073350305,-0.0000132,0.0000313,-0.420555514,0.674371064,neg,ns,0.953137437,R3hdm1,R3hdm1_Exon,1,128202367,128202416,128202415,128202416,50,+,TTCGGGGCCGTAGCACTGTCTGAGAGGTTTACATTTCTCACAGTGAACCG,"Exon (Mir128-1-201/Mir128-1-201, exon 1 of 1)",1,128103324,128237736,134413,1,R3hdm1-201,99043,R3hdm1-201;R3hdm1-213;R3hdm1-214,R3hdm1;R3hdm1;R3hdm1,0;0;-4576,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,7,226412,ENSMUSG00000056211,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19420,cg02288270,-0.00000833,0.00000421,-1.977905332,0.048824653,loss,ns,0.0000146,0.00000715,2.040638934,0.042133644,pos,ns,0.001062317,0.002096121,0.50680158,0.612654333,pos,ns,0.212784491,-0.00000146,0.0000721,-0.020233979,0.983869739,neg,ns,0.892947393,Efnb1,Efnb1_Intergenic_downstream,X,99291677,99291726,99291725,99291726,50,-,AAGAGGGCCAAGCTGACAGGACAGTGATTAGTCTTCAGGGAGCAAAGGCG,Distal Intergenic,20,99138131,99147230,9100,1,Efnb1-202,153595,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,14,13641,ENSMUSG00000031217,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9142,cg10412399,-0.00000587,0.00000617,-0.951309516,0.34218838,loss,ns,-0.0000214,0.0000105,-2.040405044,0.042157064,neg,ns,-0.003775365,0.003072146,-1.228901536,0.220040759,neg,ns,0.657496866,-0.0000177,0.000105651,-0.167381651,0.867178897,neg,ns,0.798738246,Ptpn5,Ptpn5_Intron,7,47091694,47091743,47091742,47091743,50,-,CACTTCCAGCAGTCACCCTCGATTAGCAAAGCAATATTCACCTACCTTCG,"Intron (Ptpn5-202/Ptpn5, intron 2 of 13)",7,47077795,47133684,55890,2,Ptpn5-202,41941,Ptpn5-202;Ptpn5-209;Ptpn5-201;Ptpn5-205;Ptpn5-207;Ptpn5-203;Ptpn5-206,Ptpn5;Ptpn5;Ptpn5;Ptpn5;Ptpn5;Ptpn5;Ptpn5,0;0;0;-358;-3126;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,4,19259,ENSMUSG00000030854,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25600,cg23572665,0.0000161,0.00000233,6.898866962,2.96E-11,gain,yes,0.00000808,0.00000396,2.040370942,0.04216048,pos,ns,0.004396247,0.00116057,3.788006912,0.000182394,pos,ns,3.738990336,-0.000156457,0.0000399,-3.920058843,0.000109,neg,ns,0.051844781,Ebf3,Ebf3_Intron,7,137303180,137303229,137303180,137303181,50,-,CGGCTCTCTTTGACCTTTGTGACAGGAAGTGAAAGGAAACACTGTTGACT,"Intron (Ebf3-204/Ebf3, intron 6 of 15)",7,137193673,137314445,120773,2,Ebf3-204,11216,Ebf3-204;Ebf3-201;Ebf3-202;Ebf3-203;Ebf3-208;Ebf3-206,Ebf3;Ebf3;Ebf3;Ebf3;Ebf3;Ebf3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,62,84,13593,ENSMUSG00000010476,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
24624,cg21067819,0.0000186,0.0000044,4.221178162,0.000032,gain,ns,-0.0000153,0.00000747,-2.04029288,0.042168299,neg,ns,-0.00093522,0.002189866,-0.427067078,0.669626931,neg,ns,0.174167088,-0.0000414,0.0000753,-0.549487928,0.583066263,neg,ns,0.826764892,Dctn2,Dctn2_Exon,10,127276473,127276522,127276521,127276522,50,-,TTCCCACCTGGAGAAGCTGCTGGGACCAGATGCTGCAATCAACCTTACCG,"Exon (Dctn2-201/Dctn2, exon 6 of 14)",10,127266387,127281950,15564,1,Dctn2-201,10086,Dctn2-201;Dctn2-205;Dctn2-203;Dctn2-204,Dctn2;Dctn2;Dctn2;Dctn2,0;-418;-759;-884,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,69654,ENSMUSG00000025410,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4197,cg15246718,0.0000032,0.00000312,1.026832723,0.305299784,gain,ns,-0.0000108,0.0000053,-2.039886724,0.042209003,neg,ns,-0.0000297,0.001552818,-0.019153465,0.984731002,neg,ns,0.006682389,-0.0000825,0.0000534,-1.544841472,0.123404814,neg,ns,0.927074616,Fndc3b,Fndc3b_Exon,3,27459943,27459992,27459991,27459992,50,+,ACCCCACTCTAAGTGGACTTCTTTGTGCTTTGGTCTACCCAAAACCCTCG,"Exon (Fndc3b-204/Fndc3b, exon 19 of 27)",3,27416162,27710398,294237,2,Fndc3b-204,250406,Fndc3b-204;Fndc3b-201,Fndc3b;Fndc3b,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,72007,ENSMUSG00000039286,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13002,cg01190601,-0.0000186,0.0000114,-1.627381583,0.104672013,loss,ns,0.0000396,0.0000194,2.03983825,0.042213864,pos,ns,0.019461056,0.005689499,3.420521711,0.000708761,pos,ns,3.149500276,-0.000502225,0.000195661,-2.566807936,0.01073312,neg,ns,0.184095224,Erbb4,Erbb4_Intron,1,69105039,69105088,69105087,69105088,50,-,CTGAACTCCAAGCGTGTCTAATAATGCGAGAAGCAGATTGTCTTCCCTCG,"Intron (Erbb4-201/Erbb4, intron 1 of 27)",1,68032186,69107756,1075571,2,Erbb4-201,2668,Erbb4-201;Erbb4-202;Erbb4-205,Erbb4;Erbb4;Erbb4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,13,13869,ENSMUSG00000062209,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
13770,cg08922059,0.0000154,0.0000108,1.423667444,0.155548461,gain,ns,-0.0000375,0.0000184,-2.039608449,0.042236911,neg,ns,-0.000289806,0.005381635,-0.053850965,0.957088591,neg,ns,0.019047861,0.000130891,0.000185074,0.707235151,0.479951664,pos,ns,0.538781871,Cdca7,Cdca7_Intergenic_downstream,2,72499065,72499114,72499113,72499114,50,+,AGGAAAATAATTGTTTATGGCACTCAGCTTAAGCTGTTCTGGTAATCACG,Distal Intergenic,2,72485107,72486202,1096,1,Cdca7-204,13958,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,2,66953,ENSMUSG00000055612,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2813,cg23476265,-0.00000179,0.00000133,-1.341722341,0.180668019,loss,ns,0.00000461,0.00000226,2.039134284,0.0422845,pos,ns,0.001906414,0.000662374,2.878153622,0.004278008,pos,ns,2.368758385,-0.0000564,0.0000228,-2.475910906,0.013823504,neg,ns,0.973009436,Pnisr,Pnisr_threeUTR,4,21874644,21874693,21874644,21874645,50,+,CGCAAACACAAGTCTAAGTCCCGATCAAGGTAGTATACTTTTTAAAGTAT,3' UTR,4,21847583,21876475,28893,1,Pnisr-201,27061,Coq3-201;Pnisr-201;Pnisr-213;Pnisr-202;Pnisr-203;Pnisr-207;Pnisr-204,Coq3;Pnisr;Pnisr;Pnisr;Pnisr;Pnisr;Pnisr,-4980;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,10,66625,ENSMUSG00000028248,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17112,cg16863235,-0.00000581,0.00000389,-1.49317843,0.136407541,loss,ns,0.0000135,0.00000661,2.039064423,0.042291515,pos,ns,0.003561478,0.001935216,1.840351861,0.066672324,pos,ns,1.176054406,-0.0000977,0.0000666,-1.468673824,0.142935263,neg,ns,0.930087745,Gm20537,Gm20537_threeUTR,9,88453446,88453495,88453446,88453447,50,+,CGACAAAAGCAAGGCCTGTTATGATGGTCATGAGGAAGTCTTACAAGCCT,3' UTR,9,88407432,88456616,49185,2,Gm20537-202,3121,Gm20537-202;Gm20537-201;Syncrip-201;Syncrip-210;Syncrip-211;Syncrip-207;Syncrip-208;Syncrip-203;Syncrip-205;Syncrip-209,Gm20537;Gm20537;Syncrip;Syncrip;Syncrip;Syncrip;Syncrip;Syncrip;Syncrip;Syncrip,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,5,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10272,cg07966323,0.0000376,0.00000728,5.158185759,0.000000446,gain,yes,0.0000252,0.0000124,2.038822415,0.042315825,pos,ns,0.009552802,0.0036254,2.634965006,0.008837449,pos,ns,2.053673103,-0.000164517,0.000124677,-1.319545768,0.187960414,neg,ns,0.103800886,Evx1,Evx1_Intergenic_downstream,6,52321763,52321812,52321763,52321764,50,-,CGGGTCACAGATTGAATCAATTGTCCAATCTTGTGAAAGTCATATCCTTG,Distal Intergenic,6,52313552,52316644,3093,1,Evx1-202,8260,Evx1-201,Evx1,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,19,14028,ENSMUSG00000005503,mapped to different genes,6,52321755,52321764,10,*,10,4,0.8,2.5,0.4,0.00000556,CpGisland,TRUE,U13,Hc-P
25400,cg14936776,-0.0000228,0.00001,-2.274617298,0.023611793,loss,ns,0.0000348,0.0000171,2.0388217,0.042315897,pos,ns,0.012278706,0.004995977,2.457718622,0.014529348,pos,ns,1.837753886,-0.000240972,0.000171811,-1.402540273,0.161754612,neg,ns,0.83260264,Gm9341,Gm9341_Intergenic_downstream,7,136229474,136229523,136229474,136229475,50,+,CGCCTCATTTTATCAAATGGTACCCGGCTTGGTAATGGCCTCCCCAGATA,Distal Intergenic,7,135952798,135953783,986,1,Gm9341-201,276676,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,27,28,668764,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15574,cg23461342,0.00000146,0.00000484,0.301606229,0.763154481,gain,ns,0.0000168,0.00000822,2.038577102,0.042340479,pos,ns,0.001276141,0.002408901,0.529760814,0.596656972,pos,ns,0.22427528,-0.0000624,0.0000828,-0.752860178,0.452105269,neg,ns,0.553751174,Gm50297,Gm50297_Intergenic_downstream,18,81852777,81852826,81852825,81852826,50,+,TTAATCTCGCCTATGATGACAGTAAATCTTTATCTTTTTATGGGTAAACG,Distal Intergenic,18,82261062,82261262,201,2,Gm50297-201,408436,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,17,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19145,cg00784860,8.72E-08,0.0000013,0.067189795,0.946473923,gain,ns,-0.00000449,0.0000022,-2.038391277,0.042359163,neg,ns,0.000583835,0.000645751,0.904118636,0.366634556,pos,ns,0.435766604,-0.0000172,0.0000222,-0.776427117,0.438088831,neg,ns,0.963236979,Emsy,Emsy_Exon,7,98646443,98646492,98646491,98646492,50,+,GCTTACTTATGTGCAATTGTTGTTAACCGTTCATCGTTTACTGCTCTCCG,"Exon (Emsy-202/Emsy, exon 4 of 20)",7,98587137,98656779,69643,2,Emsy-202,10287,Emsy-202;Emsy-207;Emsy-201;Emsy-211;Emsy-210;Emsy-208;Emsy-209,Emsy;Emsy;Emsy;Emsy;Emsy;Emsy;Emsy,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,13,16,233545,ENSMUSG00000035401,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11240,cg12214761,0.0000692,0.00000697,9.922331117,2.48E-20,gain,yes,0.0000241,0.0000118,2.03833142,0.042365182,pos,ns,0.017279286,0.003469891,4.979777225,0.00000106,pos,ns,5.975163555,0.000000562,0.000119329,0.004708367,0.996246309,pos,ns,0.406674222,Nr4a2,Nr4a2_fiveUTR,2,57112223,57112272,57112223,57112224,50,-,CGTCGTAGCCTGTGCTGTAGTTGTCCATAAAGGTACTGAAGCTGGGGAGA,5' UTR,2,57106830,57115038,8209,2,Nr4a2-201,2766,Nr4a2-201;Nr4a2-203;Nr4a2-206;Nr4a2-202;Nr4a2-205;Nr4a2-204,Nr4a2;Nr4a2;Nr4a2;Nr4a2;Nr4a2;Nr4a2,0;0;0;0;0;2101,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,25,18227,ENSMUSG00000026826,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
3723,cg26212903,0.0000166,0.00000696,2.390389301,0.017427244,gain,ns,0.0000241,0.0000118,2.038117986,0.042386653,pos,ns,0.000314373,0.003466135,0.090698405,0.927790813,pos,ns,0.032549932,0.0000535,0.0001192,0.449022181,0.653729392,pos,ns,0.925013192,Pou2f2,Pou2f2_Intron,7,25163673,25163722,25163673,25163674,50,-,CGCCTTGCCGATTCCCAGTCAAAACAATTAGCCGCGCTGAGTGTTGAACA,"Intron (Pou2f2-208/Pou2f2, intron 1 of 4)",7,25120618,25179726,59109,2,Pou2f2-208,16004,Pou2f2-208,Pou2f2,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,29,18987,ENSMUSG00000008496,conserved gene and region,7,25163636,25163773,138,*,138,15,0.543478261,1.493506494,0.108695652,2.55E-12,CpGisland,TRUE,U11,Tr-P
7132,cg20292243,-0.00000325,0.00000351,-0.924326581,0.356035235,loss,ns,0.0000122,0.00000597,2.03796132,0.042402419,pos,ns,0.004995015,0.001747625,2.858172741,0.004549356,pos,ns,2.34205007,-0.000151424,0.0000601,-2.519502458,0.012254551,neg,ns,0.9364904,Pcm1,Pcm1_Exon,8,41261388,41261437,41261436,41261437,50,-,GGACTATAGATTCAGCTGTGGGATCTGGTTCTGTAGCTGAGAGCACATCG,"Exon (Pcm1-203/Pcm1, exon 6 of 10)",8,41239752,41275094,35343,1,Pcm1-203,21636,Pcm1-203;Pcm1-202;Pcm1-201;Pcm1-204,Pcm1;Pcm1;Pcm1;Pcm1,0;21623;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,18536,ENSMUSG00000031592,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5271,cg04677464,-0.0000185,0.00000379,-4.888043166,0.00000164,loss,yes,0.0000131,0.00000644,2.037756439,0.042423045,pos,ns,-0.001506863,0.001886223,-0.79887841,0.424972548,neg,ns,0.371639124,-0.0000419,0.0000649,-0.646295754,0.518566004,neg,ns,0.949212756,Ranbp17,Ranbp17_Intron,11,33240518,33240567,33240566,33240567,50,-,TCCGTTCAGTCCAGCCGACTCAGAAGTAATTTTATACGCAGCAGAGAGCG,"Intron (Ranbp17-202/Ranbp17, intron 25 of 27)",11,33211795,33513746,301952,2,Ranbp17-202,273179,Ranbp17-202,Ranbp17,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,31,66011,ENSMUSG00000040594,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20675,cg02061970,-0.0000384,0.0000066,-5.816434924,0.000000015,loss,yes,-0.0000229,0.0000112,-2.037704347,0.04242829,neg,ns,0.001876561,0.003286291,0.571027109,0.568394985,pos,ns,0.245349763,-0.0000811,0.000113015,-0.717216147,0.473780792,neg,ns,0.882224265,Hipk3,Hipk3_threeUTR,2,104428266,104428315,104428314,104428315,50,+,ATAACAACTAGTTAATCACCTAATTTCACAGCTATCTGAAGTGGCAATCG,3' UTR,2,104426481,104494446,67966,2,Hipk3-201,66131,Hipk3-201;Hipk3-202;Hipk3-203,Hipk3;Hipk3;Hipk3,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,3,15259,ENSMUSG00000027177,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23249,cg05817746,0.0000746,0.0000154,4.847079587,0.00000198,gain,ns,-0.0000533,0.0000262,-2.037696083,0.042429122,neg,ns,0.019918468,0.007663473,2.599143904,0.009792595,pos,ns,2.009102196,-0.001097561,0.000263546,-4.164588164,0.0000405,neg,ns,0.234741964,Eri3,Eri3_Intron,4,117605221,117605270,117605269,117605270,50,-,ACAGAGTGACAGCAATGTGACACCATGGAAATAATTACTAACAAATCACG,"Intron (Eri3-201/Eri3, intron 6 of 8)",4,117550365,117674297,123933,1,Eri3-201,54856,Eri3-201;Eri3-206;Eri3-202;Eri3-204,Eri3;Eri3;Eri3;Eri3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,82,97,140546,ENSMUSG00000033423,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5214,cg22343089,0.0000647,0.00000567,11.40154933,2.21E-25,gain,yes,-0.0000196,0.00000964,-2.037265974,0.042472455,neg,ns,0.002967052,0.002823952,1.05067367,0.294226846,pos,ns,0.531317703,-0.0000352,0.0000971,-0.362965086,0.716878325,neg,ns,0.105342231,Nkain2,Nkain2_fiveUTR,10,32889655,32889704,32889703,32889704,50,+,ACAGATAAAGATAAGCGTGCACCTGCCACTGCAATAACCCATGGTTTCCG,Promoter (<=1kb),10,31693637,32889696,1196060,2,Nkain2-204,0,Nkain2-203;Nkain2-204;Nkain2-205;Nkain2-206;Nkain2-201,Nkain2;Nkain2;Nkain2;Nkain2;Nkain2,0;0;0;0;758,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,5,432450,ENSMUSG00000069670,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5043,cg21279088,-0.0000023,0.00000125,-1.841577251,0.066492208,loss,ns,0.00000432,0.00000212,2.036770749,0.042522394,pos,ns,0.00035466,0.000621822,0.570355776,0.568849569,pos,ns,0.245002567,0.00000781,0.0000214,0.365242987,0.715179102,pos,ns,0.038262837,Hbp1,Hbp1_fiveUTR,12,31950182,31950231,31950230,31950231,50,-,ACTTTCCTACTTACCAAACCCGTCGCCATTACCAAGTCTTTCAAGCTTCG,Promoter (<=1kb),12,31929383,31950223,20841,2,Hbp1-201,0,Hbp1-202;Hbp1-201;Hbp1-204;Hbp1-208;Hbp1-206;Hbp1-205;Hbp1-203,Hbp1;Hbp1;Hbp1;Hbp1;Hbp1;Hbp1;Hbp1,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,3,73389,ENSMUSG00000002996,conserved gene and region,12,31950045,31950364,320,*,320,31,0.6125,1.087719298,0.096875,1.94E-23,CpGisland,TRUE,U2,Pr-W
13736,cg08244314,-0.0000123,0.00000304,-4.044811962,0.0000662,loss,ns,0.0000105,0.00000516,2.036576103,0.042542036,pos,ns,0.000449813,0.001512968,0.297305058,0.766432744,pos,ns,0.115525949,-0.0000766,0.000052,-1.472078873,0.14201405,neg,ns,0.941901019,Gm4052,Gm4052_Intergenic_upstream,13,72302599,72302648,72302599,72302600,50,+,CGAACAGAGAGTTGACATTTCCTGACATTTTCCCAACTAATTACAGGACA,Distal Intergenic,13,72350221,72350671,451,1,Gm4052-201,-47573,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,16,16,100042828,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23959,cg10772699,0.000026,0.00000828,3.143046776,0.001833702,gain,ns,-0.0000286,0.0000141,-2.035946873,0.042605585,neg,ns,0.017802385,0.004120983,4.319936301,0.000021,pos,ns,4.676927537,-0.000759929,0.00014172,-5.36217761,0.000000161,neg,yes,0.759501424,Trak1,Trak1_Exon,9,121403760,121403809,121403760,121403761,50,+,CGGATTATTATGAACTAGACTGGTATTATGAAGAATGCTCGGATGGTAAT,"Exon (Trak1-207/Trak1, exon 1 of 7)",9,121297502,121473617,176116,1,Trak1-212,106258,Trak1-212;Trak1-214;Trak1-215;Trak1-209;Trak1-213;Trak1-208;Trak1-202;Trak1-201;Trak1-206;Trak1-203;Trak1-207,Trak1;Trak1;Trak1;Trak1;Trak1;Trak1;Trak1;Trak1;Trak1;Trak1;Trak1,0;0;0;0;0;0;0;0;0;11799;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,67095,ENSMUSG00000032536,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1808,cg09723377,0.00014121,0.00000981,14.3888562,2.62E-36,gain,yes,-0.0000339,0.0000167,-2.035886524,0.042611685,neg,ns,-0.012317504,0.004884466,-2.521771099,0.01217742,neg,ns,1.914444714,0.0000793,0.000167976,0.471898877,0.637330952,pos,ns,0.772842333,Dll1,Dll1_Promoter,17,15379007,15379056,15379007,15379008,50,-,CGCCATCAGCCCCCTAGCCAGCCATCTGCTCCGAACCAAATGGCGTTTTT,Promoter (2-3kb),17,15374794,15376872,2079,2,Dll1-205,-2184,Dll1-201;Dll1-203;Dll1-202;Dll1-205,Dll1;Dll1;Dll1;Dll1,-3031;-4935;-3907;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,9,9,13388,ENSMUSG00000014773,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
14094,cg14467787,0.000113941,0.00000951,11.98653102,1.85E-27,gain,yes,-0.0000329,0.0000161,-2.035027868,0.042698546,neg,ns,0.008267077,0.004731107,1.747387455,0.08156034,pos,ns,1.088520972,-0.0000432,0.000162702,-0.26567391,0.790666952,neg,ns,0.0972584,Evx2,Evx2_Promoter,2,74659620,74659669,74659668,74659669,50,+,TGTCATTCATCAAAAAGTAGCGCCCGCTCGTCATTAAGGTACGAATGACG,Promoter (<=1kb),2,74652991,74659557,6567,2,Evx2-201,-63,Evx2-201;Evx2-202,Evx2;Evx2,0;-201,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,9,35,14029,ENSMUSG00000001815,conserved gene and region,2,74659459,74659676,218,*,218,14,0.5,1.031778229,0.064220184,2.09E-08,CpGisland,TRUE,U13,Hc-P
10683,cg22521770,0.0000178,0.00000584,3.05619569,0.002436615,gain,ns,0.0000202,0.00000992,2.034883371,0.042713178,pos,ns,0.006960397,0.002905413,2.395665046,0.017183049,pos,ns,1.764899776,-0.0000108,0.0000999,-0.108220283,0.913890966,neg,ns,0.813801461,Unc5a,Unc5a_Intron,13,54965871,54965920,54965919,54965920,50,+,CTGCAGAAGCAACATCAGAAAACAATTATTGTTTTAATTACCTGCTGTCG,"Intron (Unc5a-201/Unc5a, intron 1 of 15)",13,54949411,55006018,56608,1,Unc5a-201,16460,Unc5a-201;Unc5a-202,Unc5a;Unc5a,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,12,107448,ENSMUSG00000025876,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11961,cg07687349,0.0000708,0.00000486,14.54696137,6.63E-37,gain,yes,-0.0000168,0.00000826,-2.034682566,0.042733519,neg,ns,0.00782338,0.002420722,3.231837732,0.001362287,pos,ns,2.865731434,-0.0000573,0.0000832,-0.688206282,0.491837542,neg,ns,0.1245283,Tbr1,Tbr1_Exon,2,61804890,61804939,61804938,61804939,50,+,TCAGTCAGATACAGACAATTTTCCTGACTCCAAGGACTCACCAGGGGACG,Promoter (<=1kb),2,61804453,61814114,9662,1,Tbr1-201,437,Psmd14-201;Psmd14-208;Psmd14-202;Tbr1-204;Tbr1-201;Tbr1-202;Tbr1-203,Psmd14;Psmd14;Psmd14;Tbr1;Tbr1;Tbr1;Tbr1,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,24,27,21375,ENSMUSG00000035033,conserved gene and region,2,61804938,61805248,311,*,311,21,0.620578778,0.763323983,0.067524116,9.07E-13,CpGisland,TRUE,U13,Hc-P
15843,cg25260782,0.0000578,0.00000649,8.910907413,4.41E-17,gain,yes,-0.0000224,0.000011,-2.034283136,0.042774004,neg,ns,0.003587643,0.003229398,1.110932441,0.267458334,pos,ns,0.572743865,-0.000242178,0.000111059,-2.180633514,0.029962102,neg,ns,0.209797272,Ccdc171,Ccdc171_Intron,4,83656678,83656727,83656678,83656679,50,+,CGACTCAGCAGGCTTTGGCTTAGTAATGCGCTTTGTTGTGAACCAGTGCC,"Intron (Ccdc171-201/Ccdc171, intron 12 of 25)",4,83525545,83864670,339126,1,Ccdc171-201,131133,Ccdc171-201;Ccdc171-206;Ccdc171-203,Ccdc171;Ccdc171;Ccdc171,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,9,320226,ENSMUSG00000052407,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20429,cg05723322,0.0000516,0.00000465,11.09906338,2.52E-24,gain,yes,-0.0000161,0.0000079,-2.034207937,0.04278163,neg,ns,0.002528972,0.00231558,1.092155278,0.275612903,pos,ns,0.559700454,-0.0000533,0.0000796,-0.669493962,0.503678756,neg,ns,0.124081841,Hoxc4,Hoxc4_threeUTR,15,103035307,103035356,103035307,103035308,50,-,CGAGAATGGGTAATTACATCCCCCATAAATTTTATGGCTTAGCTACTCTG,3' UTR,15,103018934,103036405,17472,1,Hoxc4-202,16373,Hoxc4-202;Hoxc4-201,Hoxc4;Hoxc4,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,17,91,15423,ENSMUSG00000075394,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
8690,cg08195405,-0.00000258,0.00000262,-0.984655852,0.325561015,loss,ns,0.00000905,0.00000445,2.034085091,0.04279409,pos,ns,0.001674395,0.001303994,1.28405158,0.200082751,pos,ns,0.698790351,-0.0000105,0.0000448,-0.233668553,0.815396532,neg,ns,0.954492916,Poll,Poll_Intergenic_downstream,19,45549352,45549401,45549400,45549401,50,-,GGTCCCTGCTGTTCCCATCAAATTAATTAACCGCGCGCTATTGATGGCCG,Distal Intergenic,19,45552275,45560531,8257,2,Poll-201,11179,Poll-201,Poll,11130,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,16,56626,ENSMUSG00000025218,mapped to different genes,19,45549348,45549466,119,*,119,11,0.62184874,0.973958333,0.092436975,0.000000025,CpGisland,TRUE,NA,NRS
17770,cg01068768,-0.00000247,0.00000156,-1.576461679,0.115939349,loss,ns,-0.0000054,0.00000266,-2.034062748,0.042796356,neg,ns,0.002200841,0.000778297,2.827765972,0.004992441,pos,ns,2.301687021,-0.0000581,0.0000268,-2.171003934,0.030689324,neg,ns,0.9682889,Son,Son_Intron,16,91662403,91662452,91662451,91662452,50,+,GCGGCAGAAGCTCTGTTTAGCAGGCCATTATCCGGGATGGCTAAGCTCCG,"Intron (Son-203/Son, intron 4 of 11)",16,91647506,91679207,31702,1,Son-203,14897,Son-203;Son-204;Son-202;Son-208;Son-201;Son-205;Son-212;Son-207,Son;Son;Son;Son;Son;Son;Son;Son,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,31,20658,ENSMUSG00000022961,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25284,cg04045637,-0.000000992,0.00000244,-0.407080913,0.684229496,loss,ns,0.00000842,0.00000414,2.033498133,0.042853665,pos,ns,0.002224943,0.001212948,1.834326381,0.067563872,pos,ns,1.170285468,-0.0000463,0.0000417,-1.110838821,0.267498573,neg,ns,0.935300127,Tmem35a,Tmem35a_Exon,X,134304685,134304734,134304733,134304734,50,+,CATGCTCTGGTGTTTGGAATCCTGCTCACTTGCCGCCTGCTGATTGCTCG,"Exon (Tmem35a-201/Tmem35a, exon 2 of 2)",20,134295225,134305969,10745,1,Tmem35a-201,9460,Cenpi-201;Cenpi-202;Cenpi-204;Tmem35a-201,Cenpi;Cenpi;Cenpi;Tmem35a,-3350;-3421;-3465;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,67564,ENSMUSG00000033578,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25855,cg20595265,0.00000561,0.0000298,0.188103661,0.850918462,gain,ns,-0.000103027,0.0000507,-2.033483056,0.042855197,neg,ns,-0.024213969,0.014843191,-1.631318271,0.103838628,neg,ns,0.983641058,0.000661825,0.000510456,1.296536843,0.195754882,pos,ns,0.628721479,Pax7,Pax7_Intron,4,139791548,139791597,139791596,139791597,50,-,GCTAAGTAACTACCATGGTCCAGTGCCTCAAAAATCACCATTAGAGTACG,"Intron (Pax7-201/Pax7, intron 4 of 8)",4,139737062,139833528,96467,2,Pax7-201,41931,Pax7-201;Pax7-202,Pax7;Pax7,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,27,18509,ENSMUSG00000028736,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11543,cg09023213,0.00000694,0.00000355,1.955935081,0.051370671,gain,ns,-0.0000123,0.00000603,-2.033318462,0.042871916,neg,ns,0.001989805,0.001766132,1.126645827,0.260763618,pos,ns,0.583753002,-0.0000468,0.0000607,-0.771310246,0.44111057,neg,ns,0.85680867,Pnn,Pnn_Exon,12,59071448,59071497,59071448,59071449,50,+,CGAATTTGCAGAACAAATAAATAAAATGGAGGCTAGGCCTAGAAGACAAT,"Exon (Pnn-201/Pnn, exon 9 of 9)",12,59066884,59073998,7115,1,Pnn-201,4564,Pnn-201;Pnn-203;Pnn-204;Pnn-202,Pnn;Pnn;Pnn;Pnn,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,18949,ENSMUSG00000020994,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7971,cg06571003,0.0000461,0.00000381,12.08414886,8.28E-28,gain,yes,-0.0000132,0.00000648,-2.033185093,0.042885468,neg,ns,0.003636933,0.001898293,1.915895897,0.056297946,pos,ns,1.249507453,-0.00000295,0.0000653,-0.045127938,0.964034388,neg,ns,0.092637269,Pax2,Pax2_Intergenic_upstream,19,44671230,44671279,44671278,44671279,50,-,AATAATCTGTCATCAGGACCAGAGGCAGTCATAAATTATATGGGAGCGCG,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-84815,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,19,44671276,44671313,38,*,38,6,0.684210526,1.425,0.157894737,0.00000546,CpGisland,TRUE,U13,Hc-P
3505,cg03999123,-0.00000525,0.00000442,-1.187690252,0.23586467,loss,ns,0.0000153,0.00000751,2.033163101,0.042887703,pos,ns,0.004550029,0.002200208,2.067999438,0.039469292,pos,ns,1.403740668,-0.000156542,0.0000757,-2.068885892,0.039385429,neg,ns,0.921600896,Gm11892,Gm11892_Intergenic_upstream,4,24218309,24218358,24218309,24218310,50,+,CGTAGGCAATGGATAAAATGAACTAGTTAGCAATTTAACCTGTAAAAAAA,Distal Intergenic,4,24238100,24239301,1202,1,Gm11892-201,-19742,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,16,16,664973,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13420,cg23846762,-0.000017,0.0000118,-1.445474898,0.149334677,loss,ns,0.0000406,0.00002,2.032722169,0.042932533,pos,ns,0.016311904,0.005853437,2.786722251,0.005652712,pos,ns,2.247743178,-0.000440694,0.000201299,-2.189250341,0.029324029,neg,ns,0.826437261,Rnf111,Rnf111_Exon,9,70442395,70442444,70442395,70442396,50,+,CGCCTGGAAACACAGAACACAAAAAGACCACTGGAAATAATTGAATAATT,"Exon (Rnf111-203/Rnf111, exon 4 of 9)",9,70425424,70453958,28535,2,Rnf111-203,11514,Rnf111-203;Rnf111-207;Rnf111-201;Rnf111-202;Rnf111-204;Rnf111-208,Rnf111;Rnf111;Rnf111;Rnf111;Rnf111;Rnf111,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,93836,ENSMUSG00000032217,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13838,cg08862467,-0.00000409,0.00000269,-1.521695672,0.129104702,loss,ns,-0.00000929,0.00000457,-2.032716614,0.042933098,neg,ns,0.001295407,0.00133824,0.967993235,0.333802337,pos,ns,0.476510627,-0.0000432,0.000046,-0.939168506,0.348375414,neg,ns,0.952018515,Fryl,Fryl_Exon,5,73064516,73064565,73064516,73064517,50,-,CGACTAGCTGTTTCTTTGCAAAACTGAGTTGGGCTGTCAAAATGCTGGAT,"Exon (Fryl-219/Fryl, exon 5 of 21)",5,73019987,73071175,51189,2,Fryl-219,6610,Fryl-219;Fryl-202;Fryl-210;Fryl-201;Fryl-217;Fryl-211;Fryl-216;Fryl-214,Fryl;Fryl;Fryl;Fryl;Fryl;Fryl;Fryl;Fryl,0;0;0;0;0;0;0;6734,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,7,72313,ENSMUSG00000070733,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24709,cg24615697,-0.0000061,0.00000194,-3.143919263,0.001828414,loss,ns,0.0000067,0.00000329,2.032677275,0.0429371,pos,ns,-0.001071613,0.000965224,-1.110221375,0.267764068,neg,ns,0.572247703,0.0000454,0.0000332,1.369074647,0.171967058,pos,ns,0.963030523,Fbxl19,Fbxl19_threeUTR,7,127768711,127768760,127768759,127768760,50,+,ACTTGAACATTCATCTGTACTGAAGTGTTACTTGAACCGGGGGAATCTCG,3' UTR,7,127745201,127768927,23727,1,Fbxl19-203,23510,Fbxl19-203;Fbxl19-202;Fbxl19-201;Fbxl19-204;Fbxl19-207;Orai3-202;Orai3-201;Orai3-203,Fbxl19;Fbxl19;Fbxl19;Fbxl19;Fbxl19;Orai3;Orai3;Orai3,0;0;0;0;0;-1055;-1055;-1055,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,3,233902,ENSMUSG00000030811,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
19522,cg27276953,-0.00000399,0.0000011,-3.641669083,0.000317357,loss,ns,0.00000379,0.00000186,2.032646668,0.042940214,pos,ns,0.001747977,0.000545738,3.202961369,0.001501607,pos,ns,2.823443704,-0.0000393,0.0000188,-2.092319052,0.037223037,neg,ns,0.968727891,Armc8,Armc8_Exon,9,99551552,99551601,99551600,99551601,50,-,TGTAGAACTTTCTGGGGATCAGGGTCAAATAGCCTGTCAACATAGTGGCG,"Exon (Armc8-201/Armc8, exon 2 of 22)",9,99478372,99568899,90528,2,Armc8-201,17298,Armc8-201;Armc8-202;Armc8-203;Armc8-204,Armc8;Armc8;Armc8;Armc8,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,10,74125,ENSMUSG00000032468,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1320,cg18257298,0.0000519,0.00000597,8.699873098,1.99E-16,gain,yes,-0.0000206,0.0000101,-2.032570775,0.042947935,neg,ns,0.001751133,0.002971,0.589408741,0.556016411,pos,ns,0.25491239,0.00010108,0.000102172,0.989310329,0.323282877,pos,ns,0.128197406,Fezf2,Fezf2_fiveUTR,14,12345694,12345743,12345742,12345743,50,-,ACATTCAGCTGACATCACATGAAGTCACTTGAAGTGGAATGACATGGGCG,Promoter (<=1kb),14,12342094,12345844,3751,2,Fezf2-203,101,Fezf2-203;Fezf2-201;Fezf2-202,Fezf2;Fezf2;Fezf2,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,13,45,54713,ENSMUSG00000021743,conserved gene and region,14,12345742,12345947,206,*,206,23,0.679611651,1.001479603,0.111650485,5.22E-19,CpGisland,TRUE,U13,Hc-P
14661,cg23414527,-0.00000414,0.00000156,-2.661229069,0.008191189,loss,ns,0.00000537,0.00000264,2.032074368,0.042998469,pos,ns,0.002860917,0.000774186,3.695386967,0.0002595,pos,ns,3.585862455,-0.0000734,0.0000266,-2.756602684,0.006186554,neg,ns,0.962427592,Rbfox2,Rbfox2_Exon,15,77113615,77113664,77113615,77113616,50,+,CGTTCATTAAAGATTATTTCTACATCTAGGATTTTGCCAAACTGCTGCAG,"Exon (Rbfox2-204/Rbfox2, exon 5 of 14)",15,77078990,77306928,227939,2,Rbfox2-204,193264,Rbfox2-204;Rbfox2-203;Rbfox2-202;Rbfox2-206;Rbfox2-208;Rbfox2-209;Rbfox2-201;Rbfox2-207;Rbfox2-212;Rbfox2-213;Rbfox2-214;Rbfox2-210;Rbfox2-205,Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2,0;0;0;0;0;0;0;0;0;0;0;19116;89772,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,20,93686,ENSMUSG00000033565,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15049,cg24855613,-0.00000622,0.00000194,-3.199745442,0.001517914,loss,ns,0.00000671,0.0000033,2.031228781,0.043084666,pos,ns,0.001317208,0.000967198,1.36188037,0.174224471,pos,ns,0.758890845,-0.0000196,0.0000333,-0.588878416,0.556371684,neg,ns,0.951771166,Dgkh,Dgkh_Exon,14,78627771,78627820,78627771,78627772,50,-,CGTACCAGTTGTGCATCCCTGAGAAATGTTCCACATTAAACTGGGCCACC,"Exon (Dgkh-202/Dgkh, exon 6 of 30)",14,78558750,78732776,174027,2,Dgkh-202,104956,Dgkh-202;Dgkh-201;Dgkh-203;Dgkh-206;Dgkh-204;Dgkh-205,Dgkh;Dgkh;Dgkh;Dgkh;Dgkh;Dgkh,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,3,380921,ENSMUSG00000034731,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5227,cg12081801,-0.00000202,0.00000289,-0.697842896,0.485798531,loss,ns,0.00000997,0.00000491,2.030700055,0.043138638,pos,ns,0.004557528,0.001438306,3.168676924,0.001684107,pos,ns,2.773630422,-0.0000965,0.0000495,-1.950142252,0.052060281,neg,ns,0.93865779,Rragd,Rragd_Exon,4,32996011,32996060,32996059,32996060,50,-,GGACAGATTGACTTTTTTGACCCTACATTTGACTATGAGATGATCTTCCG,"Exon (Rragd-203/Rragd, exon 2 of 7)",4,32983037,33022180,39144,1,Rragd-203,12974,Rragd-203;Rragd-201;Rragd-202,Rragd;Rragd;Rragd,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,52187,ENSMUSG00000028278,conserved gene and region,4,32996059,32996115,57,*,57,7,0.631578947,1.231481482,0.122807018,0.00000327,CpGisland,TRUE,U11,Tr-P
1537,cg24715927,0.0000152,0.0000043,3.545764794,0.000451893,gain,ns,-0.0000148,0.0000073,-2.030627286,0.04314607,neg,ns,-0.001092471,0.002138967,-0.510746853,0.609891847,neg,ns,0.214747172,0.0000374,0.0000736,0.508736424,0.611298858,pos,ns,0.916757786,Gm11826,Gm11826_Intergenic_downstream,4,13480586,13480635,13480634,13480635,50,+,GGCGGGCAGCTGCAGAAACCGCTTGGCTAATTATGAGAATTCACTGTTCG,Downstream (2-3kb),4,13482755,13483192,438,2,Gm11826-201,2557,Gm11826-201,Gm11826,2557,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,6,6,100039988,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11459,cg09989341,-0.00000208,0.00000143,-1.460681201,0.145115711,loss,ns,0.00000492,0.00000242,2.030618004,0.043147019,pos,ns,-0.0000465,0.00071009,-0.065552274,0.947776541,neg,ns,0.023294045,-0.00000346,0.0000244,-0.141677362,0.887426883,neg,ns,0.956433335,Bzw1,Bzw1_Exon,1,58397804,58397853,58397804,58397805,50,+,CGATATGCAGAAACACTCTTTGACATTCTGGTGGCTGGTGGAATGCTGGG,"Exon (Bzw1-201/Bzw1, exon 3 of 12)",1,58392898,58407353,14456,1,Bzw1-201,4906,Bzw1-201;Bzw1-204;Bzw1-203;Bzw1-202,Bzw1;Bzw1;Bzw1;Bzw1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,66882,ENSMUSG00000051223,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18155,cg21084516,0.0000426,0.00000663,6.432861734,4.74E-10,gain,yes,-0.0000229,0.0000113,-2.030470963,0.043162041,neg,ns,0.009554206,0.003297661,2.897267482,0.00403232,pos,ns,2.394444984,-0.000152629,0.000113406,-1.345856497,0.179332237,neg,ns,0.094161941,Hsd17b12,Hsd17b12_Intron,2,94243838,94243887,94243838,94243839,50,-,CGCGCATTACTCACTTTTTGCAGTCACGACTTGGGAATCCGTGCTGGTTC,"Intron (Mir670hg-205/Mir670hg-205, intron 2 of 5)",2,94032689,94157964,125276,2,Hsd17b12-201,-85923,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,14,19,56348,ENSMUSG00000027195,conserved gene but different region,2,94243768,94243904,137,*,137,10,0.525547445,1.064491065,0.072992701,0.00000123,CpGisland,TRUE,U13,Hc-P
3878,cg20687744,-0.00000799,0.00000235,-3.405255813,0.000748063,loss,ns,-0.00000809,0.00000399,-2.030449639,0.04316422,neg,ns,0.00224763,0.001167605,1.924992502,0.055145105,pos,ns,1.258493036,-0.0000184,0.0000402,-0.458084121,0.647212941,neg,ns,0.955639724,Nsd3,Nsd3_Exon,8,25676661,25676710,25676709,25676710,50,+,GATTAGGAGGCCTGATTGCGTTGTGTTTCCACCATTCCACAGGGTCGGCG,"Exon (Nsd3-211/Nsd3, exon 10 of 10)",8,25601601,25677214,75614,1,Nsd3-211,75060,Nsd3-211;Nsd3-203;Nsd3-208;Nsd3-204;Nsd3-206;Nsd3-201;Nsd3-205,Nsd3;Nsd3;Nsd3;Nsd3;Nsd3;Nsd3;Nsd3,0;74377;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,14,234135,ENSMUSG00000054823,conserved gene and region,8,25676544,25676764,221,*,221,19,0.601809955,0.956056466,0.085972851,1.56E-13,CpGisland,TRUE,U10,Tr-S
3299,cg12568485,0.000109757,0.0000278,3.955108999,0.0000949,gain,ns,-0.0000957,0.0000471,-2.030256907,0.043183918,neg,ns,0.022017908,0.013811814,1.594135905,0.11192461,pos,ns,0.95107441,-0.000265845,0.000474987,-0.559688732,0.576095937,neg,ns,0.705127583,Srpk2,Srpk2_Intron,5,23513540,23513589,23513540,23513541,50,-,CGAGGGACTTTCCCCAGCAGTTCAATGATCAATGCTATGTGATCTGCATT,"Intron (Srpk2-201/Srpk2, intron 14 of 14)",5,23503264,23616534,113271,2,Srpk2-201,102945,Srpk2-201;Srpk2-204,Srpk2;Srpk2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,8,20817,ENSMUSG00000062604,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26668,cg26158731,0.00012155,0.0000175,6.954493367,2.10E-11,gain,yes,-0.0000603,0.0000297,-2.030101439,0.043199813,neg,ns,0.029441185,0.008698933,3.384459429,0.000804882,pos,ns,3.094267903,-0.000431403,0.000299156,-1.442068534,0.150292538,neg,ns,0.468263649,Rere,Rere_fiveUTR,4,150406247,150406296,150406295,150406296,50,+,AGTGAGAAATTCAGAAGACTGAAGCCCAGGCTTACTGTCTACCTTTCACG,5' UTR,4,150281646,150621966,340321,1,Rere-202,124601,Rere-202;Rere-204,Rere;Rere,0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,7,68703,ENSMUSG00000039852,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22285,cg06492659,0.00000114,0.00000531,0.215285979,0.829685928,gain,ns,0.0000183,0.00000903,2.030039193,0.043206178,pos,ns,0.009181064,0.002645234,3.470795059,0.000592541,pos,ns,3.227281849,-0.000306458,0.000091,-3.368806525,0.000850275,neg,ns,0.890549567,Mtrex,Mtrex_Exon,13,112901501,112901550,112901501,112901502,50,-,CGGGCATTTGTAAATAAAACAGTTCTAGCTGGCATGTTAATTCCCATAGC,"Exon (Mtrex-201/Mtrex, exon 14 of 27)",13,112867418,112927398,59981,2,Mtrex-201,25848,Mtrex-201,Mtrex,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,72198,ENSMUSG00000016018,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27044,cg07770008,-0.000000773,0.00000206,-0.375703005,0.707394659,loss,ns,0.0000071,0.0000035,2.030015481,0.043208603,pos,ns,0.002708234,0.001024511,2.643440541,0.008624063,pos,ns,2.064288103,-0.0000647,0.0000352,-1.836183462,0.067288048,neg,ns,0.954670269,Ralgps2,Ralgps2_Exon,1,156821442,156821491,156821442,156821443,50,-,CGAGAGAATGGTATAATCTGTTCCTGTTGGATTCCATTATAAATTGTATA,"Exon (Ralgps2-204/Ralgps2, exon 14 of 19)",1,156804166,156939602,135437,2,Ralgps2-204,118111,Ralgps2-204;Ralgps2-201;Ralgps2-215;Ralgps2-203;Ralgps2-202;Ralgps2-214;Ralgps2-205;Ralgps2-209;Ralgps2-211;Ralgps2-207,Ralgps2;Ralgps2;Ralgps2;Ralgps2;Ralgps2;Ralgps2;Ralgps2;Ralgps2;Ralgps2;Ralgps2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,3,78255,ENSMUSG00000026594,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1169,cg05042729,-0.00000152,0.00000121,-1.257348465,0.209573896,loss,ns,0.00000418,0.00000206,2.029927493,0.043217603,pos,ns,0.001680852,0.000602892,2.787982812,0.005631308,pos,ns,2.249390714,-0.0000582,0.0000207,-2.806182392,0.005330372,neg,ns,0.974883774,Phf14,Phf14_Exon,6,11987587,11987636,11987587,11987588,50,-,CGCATGATTCAAATTCAGGAAAATATGGCTGAACAAAAGAATATAAAAGA,"Exon (Phf14-202/Phf14, exon 10 of 17)",6,11925881,12008013,82133,1,Phf14-202,61706,Phf14-202;Phf14-201;Phf14-203;Phf14-204;Phf14-207;Phf14-210,Phf14;Phf14;Phf14;Phf14;Phf14;Phf14,0;0;0;60804;0;-3236,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,75725,ENSMUSG00000029629,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8652,cg04118160,-0.00000374,0.0000012,-3.13026292,0.001912819,loss,ns,0.00000413,0.00000203,2.02990765,0.043219633,pos,ns,0.001447697,0.0005954,2.431468815,0.015604078,pos,ns,1.806761896,-0.0000457,0.0000205,-2.231863043,0.026338434,neg,ns,0.963681513,Btrc,Btrc_Intron,19,45482265,45482314,45482265,45482266,50,+,CGTGACTCTGTAATGGAATATCATGGCAGGGGGTATAATACTGTAAATAA,"Intron (Btrc-204/Btrc, intron 1 of 2)",19,45363734,45507736,144003,1,Btrc-204,118531,Btrc-204;Btrc-201;Btrc-210;Btrc-202;Btrc-203;Btrc-209,Btrc;Btrc;Btrc;Btrc;Btrc;Btrc,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,63,98,12234,ENSMUSG00000025217,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27751,cg04099562,-0.00000799,0.00000368,-2.171529582,0.030649238,loss,ns,-0.0000127,0.00000625,-2.029573784,0.043253797,neg,ns,-0.002590092,0.001830955,-1.414612871,0.158185654,neg,ns,0.800832906,0.0000716,0.000063,1.1367846,0.256506304,pos,ns,0.501803319,Wdr26,Wdr26_Intron,1,181209751,181209800,181209799,181209800,50,+,CTATACTAAAAATAGCAAATTTACTATGGTGTAGGTTCCAAACAGTCACG,"Intron (Wdr26-207/Wdr26, intron 1 of 13)",1,181173228,181211978,38751,2,Wdr26-207,2178,Wdr26-207;Wdr26-209;Wdr26-208;Wdr26-201,Wdr26;Wdr26;Wdr26;Wdr26,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,7,226757,ENSMUSG00000038733,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13396,cg06926934,0.000115647,0.000013,8.92377819,4.02E-17,gain,yes,-0.0000447,0.000022,-2.029416079,0.043269943,neg,ns,0.013977527,0.006450042,2.16704441,0.030992736,pos,ns,1.508740088,-0.000500003,0.000221816,-2.254129411,0.024886074,neg,ns,0.107649406,Nr2f2,Nr2f2_Exon,7,70359988,70360037,70359988,70359989,50,-,CGTGTAGCTCAGGTTCCTCCGCACGCTGCGCTTGAAGAAGCTCTTGCAGC,Promoter (<=1kb),7,70351944,70360593,8650,2,Nr2f2-201,556,Nr2f2-201;Nr2f2-203;Nr2f2-202;Nr2f2-205;Nr2f2-204;Nr2f2-206,Nr2f2;Nr2f2;Nr2f2;Nr2f2;Nr2f2;Nr2f2,0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,24,69,11819,ENSMUSG00000030551,conserved gene and region,7,70359750,70360467,718,*,718,76,0.703342618,0.857367313,0.105849582,8.30E-60,CpGisland,TRUE,U1,Pr-A
7911,cg13123762,-0.0000022,0.00000786,-0.279925357,0.779721463,loss,ns,0.0000271,0.0000134,2.029127649,0.043299486,pos,ns,0.004142665,0.003914139,1.058384709,0.290704089,pos,ns,0.536548859,-0.000225004,0.000134607,-1.671566126,0.095618974,neg,ns,0.809834334,Hif1an,Hif1an_Intron,19,44632593,44632642,44632593,44632594,50,+,CGAGTGTGTTAAGCACAGTTTTATTAGATCTGAAACAAATTTTGGTGGGG,"Intron (Gm35460-201/Gm35460-201, intron 3 of 6)",19,44562850,44576274,13425,1,Hif1an-201,69743,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,31,319594,ENSMUSG00000036450,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11306,cg14040602,-0.00000826,0.00000376,-2.197373559,0.028733299,loss,ns,0.000013,0.00000638,2.029030469,0.043309443,pos,ns,0.001060311,0.001869866,0.567052193,0.571089086,pos,ns,0.243296139,-0.00010855,0.0000643,-1.688054824,0.092406414,neg,ns,0.921571025,Gm13531,Gm13531_Intergenic_upstream,2,57523001,57523050,57523049,57523050,50,+,TATTATGCAAAGCATACCCACCCAGAATGTTTGCATAGCTATCACAAGCG,Distal Intergenic,2,57425167,57425709,543,2,Gm13531-201,-97292,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,10,271788,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1145,cg20869290,0.0000228,0.0000246,0.926569007,0.354871139,gain,ns,0.0000849,0.0000419,2.029012667,0.043311268,pos,ns,0.042220822,0.012261781,3.443286348,0.00065372,pos,ns,3.184608119,-0.001509904,0.000421682,-3.580672199,0.000397695,neg,ns,0.233294134,Rpl23a-ps13,Rpl23a-ps13_Intergenic_upstream,X,11807738,11807787,11807786,11807787,50,-,TTTTTCTAATTGGAGGCGAACAGCGGCCCTAATGGATGGAGCCGCTCTCG,Distal Intergenic,20,11867265,11867705,441,1,Rpl23a-ps13-201,-59527,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,13,14,628338,NA,mapped to different genes,X,11807754,11808014,261,*,261,23,0.670498084,0.877118644,0.088122605,1.55E-16,CpGisland,TRUE,U3,Pr-B
19764,cg03845879,-0.00000675,0.00000228,-2.95821601,0.003332364,loss,ns,0.00000786,0.00000387,2.028783885,0.043334719,pos,ns,-0.00121819,0.001135243,-1.073065339,0.284076396,neg,ns,0.54656485,0.0000297,0.000039,0.761348599,0.447027655,pos,ns,0.964384602,Ptgfrn,Ptgfrn_threeUTR,3,101043196,101043245,101043196,101043197,50,-,CGCTCAGAACTTGACATGCAGAAAAGAGAGAGCGCCAAGTCCCACCTGAG,3' UTR,3,101040232,101110278,70047,2,Ptgfrn-201,67033,Ptgfrn-201,Ptgfrn,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,2,19221,ENSMUSG00000027864,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15713,cg15275446,0.000106648,0.0000117,9.093968661,1.18E-17,gain,yes,-0.0000404,0.0000199,-2.028639376,0.043349537,neg,ns,0.011332894,0.005836815,1.94162307,0.053088574,pos,ns,1.274998941,-0.000425214,0.000200728,-2.118361935,0.034939766,neg,ns,0.418791278,Tcf20,Tcf20_Intron,15,82952417,82952466,82952465,82952466,50,+,ACTGTGTTCAAGCTTCATTAGGGTAATCACGGGCTCCCCTCCCGGCAGCG,"Intron (Tcf20-204/Tcf20, intron 1 of 1)",15,82856793,82963558,106766,2,Tcf20-204,11092,Tcf20-204;Tcf20-203,Tcf20;Tcf20,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,13,21411,ENSMUSG00000041852,mapped to different genes,15,82952318,82952577,260,*,260,19,0.630769231,0.738636364,0.073076923,3.18E-12,CpGisland,TRUE,U13,Hc-P
12644,cg10737549,-0.0000644,0.0000114,-5.633146877,3.97E-08,loss,yes,0.0000394,0.0000194,2.028638205,0.043349657,pos,ns,-0.002075468,0.005694113,-0.364493652,0.71573792,neg,ns,0.145245973,-0.0000374,0.00019582,-0.19082894,0.848784528,neg,ns,0.662047678,Gm19077,Gm19077_Intergenic_downstream,15,66324727,66324776,66324775,66324776,50,+,CTGACAGCAGAGACAAAGGCACCGAGGCACCTTGAGAATGACAAATGGCG,Distal Intergenic,15,66357521,66358484,964,2,Gm19077-201,33708,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,100418214,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12994,cg17115241,-0.00000494,0.00000192,-2.573990009,0.010517515,loss,ns,0.00000662,0.00000326,2.028489452,0.043364915,pos,ns,0.003725898,0.000955562,3.899170762,0.000118359,pos,ns,3.92679746,-0.0000875,0.0000329,-2.661168771,0.008192623,neg,ns,0.954588656,Khdrbs3,Khdrbs3_threeUTR,15,69093985,69094034,69093985,69093986,50,+,CGCACTCGCCAAGGCTGAGGATGTGTAACCCTTAAACGGTCTTCATTTTC,3' UTR,15,68928432,69101211,172780,1,Khdrbs3-204,165553,Khdrbs3-201;Khdrbs3-204;Khdrbs3-206;Khdrbs3-202,Khdrbs3;Khdrbs3;Khdrbs3;Khdrbs3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,5,13992,ENSMUSG00000022332,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13349,cg01989061,0.0000602,0.00000853,7.05877052,1.11E-11,gain,yes,0.0000294,0.0000145,2.028469436,0.043366968,pos,ns,0.016447369,0.004247791,3.871981461,0.000131687,pos,ns,3.880458181,-0.000284168,0.000146081,-1.945273803,0.052645849,neg,ns,0.178727236,Nr2f2,Nr2f2_Intron,7,70281673,70281722,70281673,70281674,50,+,CGGGGCCGCCACATGCTCACTCCGTTTTACTGTCAGGGCTGGTCGAGGCT,"Intron (Gm29683-202/Gm29683-202, intron 1 of 3)",7,70353074,70355237,2164,2,Nr2f2-203,73515,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,69,11819,ENSMUSG00000030551,mapped to different genes,7,70281536,70281717,182,*,182,17,0.642857143,0.909465021,0.093406593,9.09E-13,CpGisland,TRUE,U13,Hc-P
14999,cg13557477,-0.0000274,0.0000254,-1.076568469,0.282510188,loss,ns,0.0000876,0.0000432,2.028377315,0.04337642,pos,ns,0.006195933,0.012655098,0.489599734,0.624763432,pos,ns,0.204284398,0.000292545,0.000435208,0.672195525,0.501959908,pos,ns,0.622074727,Pou4f2,Pou4f2_Intergenic_downstream,8,78429366,78429415,78429414,78429415,50,+,ACTAATGATTACTTACTTATTCCTTGTAATTATCTGGATTTAATAATTCG,Distal Intergenic,8,78433010,78436645,3636,2,Pou4f2-201,7230,Pou4f2-201,Pou4f2,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,23,18997,ENSMUSG00000031688,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
19016,cg06682970,0.00009,0.0000175,5.134169293,0.000000501,gain,yes,-0.0000604,0.0000298,-2.028347747,0.043379454,neg,ns,0.014120394,0.008726461,1.618112288,0.106655374,pos,ns,0.972017257,-0.000416934,0.000300102,-1.389304931,0.165737138,neg,ns,0.569744214,Dach1,Dach1_Promoter,14,98172445,98172494,98172445,98172446,50,+,CGTATTGTGCTGAAATCAATAAGACTGTTTAAAATTCAAAGACCTGCAAA,Promoter (2-3kb),14,97825866,98169765,343900,2,Dach1-203,-2680,Dach1-201;Dach1-202;Dach1-203,Dach1;Dach1;Dach1,0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,8,76,13134,ENSMUSG00000055639,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
11640,cg01255766,-0.00000339,0.0000056,-0.605934692,0.54500152,loss,ns,0.0000193,0.00000952,2.027954932,0.043419779,pos,ns,0.00188275,0.002787761,0.675362894,0.499948675,pos,ns,0.301074579,-0.000131821,0.0000959,-1.374984835,0.170129077,neg,ns,0.873077724,Celf6,Celf6_Exon,9,59582298,59582347,59582298,59582299,50,+,CGCCCGGGACTCTGCTCTCAAGGCCCAGAGTGCACTGCACGAGCAGAAGA,"Exon (Celf6-207/Celf6, exon 2 of 11)",9,59577917,59607292,29376,1,Celf6-207,4381,Celf6-207;Celf6-203;Celf6-205;Celf6-201,Celf6;Celf6;Celf6;Celf6,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,8,76183,ENSMUSG00000032297,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
5780,cg24901605,-0.00000417,0.00000172,-2.430266729,0.015654935,loss,ns,0.00000591,0.00000292,2.027791755,0.04343654,pos,ns,0.00050852,0.000854114,0.595377398,0.55202561,pos,ns,0.258040774,-0.0000132,0.0000294,-0.449601834,0.653311761,neg,ns,0.95265216,Gapvd1,Gapvd1_Exon,2,34706698,34706747,34706698,34706699,50,-,CGGACACAACACTGAGGCCTGGTGTGCTGGGGCGGGAACTGACCTCCCTG,"Exon (Gapvd1-202/Gapvd1, exon 13 of 27)",2,34674594,34755232,80639,2,Gapvd1-202,48485,Gapvd1-202;Gapvd1-206;Gapvd1-201;Gapvd1-203;Gapvd1-204;Gapvd1-213;Gapvd1-208;Gapvd1-205;Gapvd1-207;Gapvd1-211;Gapvd1-212,Gapvd1;Gapvd1;Gapvd1;Gapvd1;Gapvd1;Gapvd1;Gapvd1;Gapvd1;Gapvd1;Gapvd1;Gapvd1,0;0;0;0;0;0;0;0;0;0;5982,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,66691,ENSMUSG00000026867,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12755,cg20370622,0.000033,0.00000381,8.666782102,2.51E-16,gain,yes,-0.0000131,0.00000648,-2.027634757,0.043452671,neg,ns,-0.000198755,0.001897437,-0.104749188,0.916642571,neg,ns,0.037799977,0.000181023,0.0000653,2.774191115,0.005869526,pos,ns,0.074032947,Phox2b,Phox2b_Promoter,5,67098553,67098602,67098553,67098554,50,-,CGCTTCTAACGTGATAAATTCTTTCATTTGTGTAAGCAAATTTCGTTTGG,Promoter (<=1kb),5,67094399,67099301,4903,2,Phox2b-201,699,Phox2b-201;Phox2b-202,Phox2b;Phox2b,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,13,28,18935,ENSMUSG00000012520,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
27762,cg12827760,0.000109958,0.000012,9.126917389,9.26E-18,gain,yes,-0.0000415,0.0000205,-2.02761577,0.043454622,neg,ns,0.016447748,0.005996221,2.743019045,0.006441912,pos,ns,2.190985241,-0.000134192,0.00020621,-0.650754622,0.515686931,neg,ns,0.255990048,Hlx,Hlx_Promoter,1,184735256,184735305,184735304,184735305,50,+,TTTCAATATTTGTGCAACTTTATCTCCACCGGCAAGTTGCTCGGGTGACG,Promoter (2-3kb),1,184727140,184732619,5480,2,Hlx-201,-2637,Hlx-201;Hlx-202,Hlx;Hlx,-2637;-3658,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,3,15284,ENSMUSG00000039377,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
17108,cg04274358,-0.00000316,0.00000164,-1.928772273,0.054671931,loss,ns,0.00000565,0.00000279,2.027460048,0.043470628,pos,ns,0.00164933,0.000816456,2.020108993,0.04423191,pos,ns,1.35426431,-0.0000248,0.0000281,-0.882562854,0.378156356,neg,ns,0.958685809,Msi2,Msi2_Intron,11,88443640,88443689,88443640,88443641,50,+,CGAAGAGCAAAATTGTTTATGAAATTGAATACAAAAAGCTACAGAAATGT,"Intron (Msi2-203/Msi2, intron 7 of 13)",11,88339382,88718229,378848,2,Msi2-203,274540,Msi2-203;Msi2-201;Msi2-207,Msi2;Msi2;Msi2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,21,36,76626,ENSMUSG00000069769,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14331,cg14173412,0.000103506,0.0000117,8.8096528,9.11E-17,gain,yes,-0.0000405,0.00002,-2.027389806,0.043477849,neg,ns,0.017288112,0.00584767,2.956410254,0.003351392,pos,ns,2.47477471,-0.000280065,0.000201101,-1.392660951,0.164720361,neg,ns,0.224965819,Zfand2b,Zfand2b_Exon,1,75169228,75169277,75169228,75169229,50,+,CGCAGACCATGTGGCCTACGCCCAGCATCACTGTGGATCTGCTTACCAAA,Promoter (<=1kb),1,75168646,75170752,2107,1,Zfand2b-208,582,Abcb6-201;Abcb6-203;Abcb6-206;Abcb6-202;Zfand2b-208;Zfand2b-206;Zfand2b-204;Zfand2b-201;Zfand2b-207;Zfand2b-205;Zfand2b-202;Zfand2b-203;Zfand2b-209,Abcb6;Abcb6;Abcb6;Abcb6;Zfand2b;Zfand2b;Zfand2b;Zfand2b;Zfand2b;Zfand2b;Zfand2b;Zfand2b;Zfand2b,11115;11009;3592;11009;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,68818,ENSMUSG00000026197,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
10559,cg18637807,-0.000000389,0.00000456,-0.085372116,0.93202067,loss,ns,-0.0000157,0.00000775,-2.027377239,0.043479141,neg,ns,-0.002743432,0.002270102,-1.208505925,0.227773741,neg,ns,0.642496345,-0.0000906,0.0000781,-1.160978034,0.246544044,neg,ns,0.903035824,Gm12469,Gm12469_Intergenic_upstream,4,54344598,54344647,54344598,54344599,50,-,CGTTCCATTGACTGGACGTGTAATGGGGTGAAAGTGAGCCTGCTGCTATT,Distal Intergenic,4,54235670,54235876,207,2,Gm12469-201,-108771,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,9,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23157,cg21601546,0.000026,0.00000354,7.344044385,1.84E-12,gain,yes,-0.0000122,0.00000601,-2.027323206,0.043484697,neg,ns,-0.002990486,0.001760689,-1.69847465,0.090421582,neg,ns,1.043727897,0.000107108,0.0000605,1.768922664,0.07789005,pos,ns,0.934656836,Rnf220,Rnf220_Intron,4,117370713,117370762,117370761,117370762,50,+,CCAGACGTCTGTAAACAATGGCTTCCAAATTCAATCAGGCTGGGGACCCG,"Intron (Rnf220-201/Rnf220, intron 2 of 14)",4,117271463,117497052,225590,2,Rnf220-201,126290,Rnf220-201;Rnf220-202;Rnf220-207,Rnf220;Rnf220;Rnf220,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10313,cg03581450,0.00000164,0.00000184,0.889077167,0.374650983,gain,ns,0.00000635,0.00000313,2.027268127,0.043490361,pos,ns,0.002595363,0.000917755,2.827947518,0.004989683,pos,ns,2.301927003,-0.0000315,0.0000316,-0.999393809,0.318383406,neg,ns,0.966432985,Zcchc4,Zcchc4_Intron,5,52812466,52812515,52812514,52812515,50,-,CATGCATTTTACATACCATATGTTTATAGTTAATTAGCACAACAAACCCG,"Intron (Zcchc4-202/Zcchc4, intron 7 of 11)",5,52775409,52823828,48420,1,Zcchc4-202,37057,Zcchc4-202;Zcchc4-201;Zcchc4-203;Zcchc4-205;Zcchc4-204,Zcchc4;Zcchc4;Zcchc4;Zcchc4;Zcchc4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,78796,ENSMUSG00000029179,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22797,cg00138195,0.000001,0.0000012,0.831860383,0.406128078,gain,ns,0.00000414,0.00000204,2.027213359,0.043495994,pos,ns,0.000242832,0.00059898,0.40540902,0.685456527,pos,ns,0.164020084,0.0000171,0.0000206,0.830679528,0.406793993,pos,ns,0.011559922,Dmbx1,Dmbx1_Intergenic_upstream,4,115963125,115963174,115963125,115963126,50,+,CGATTCTCTCGCTGTCACTTAGGGAGGCTCAGCGCGATTTGCGGCCTAAT,Distal Intergenic,4,115915120,115939926,24807,2,Dmbx1-202,-23199,Faah-202,Faah,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,15,42,140477,ENSMUSG00000028707,mapped to different genes,4,115962737,115963443,707,*,707,80,0.684582744,0.96711865,0.113154173,1.72E-65,CpGisland,TRUE,U3,Pr-B
18057,cg14372254,-0.00000472,0.00000553,-0.851936673,0.394906899,loss,ns,0.0000191,0.0000094,2.026978583,0.043520146,pos,ns,0.007909435,0.002754685,2.871266061,0.004369832,pos,ns,2.359535263,-0.00030361,0.0000947,-3.204893384,0.001491889,neg,ns,0.895867145,Pola1,Pola1_Intron,X,93429443,93429492,93429443,93429444,50,+,CGATCAAGAACTATTTCTGAATGGTAGGAAATAATTCCACTTTGTACATC,"Intron (Pola1-201/Pola1, intron 34 of 36)",20,93304767,93632155,327389,2,Pola1-201,202663,Pola1-201,Pola1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,59,62,18968,ENSMUSG00000006678,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
355,cg06026845,-0.00000543,0.0000085,-0.638441095,0.523657955,loss,ns,0.0000293,0.0000144,2.026580934,0.04356108,pos,ns,0.005659184,0.004230388,1.337745721,0.181959891,pos,ns,0.740024332,-0.000218907,0.000145483,-1.504692176,0.133421383,neg,ns,0.653069988,Zfhx4,Zfhx4_Intron,3,5237571,5237620,5237619,5237620,50,+,TACTTGTGAAGGTCTATTCATTGCTTTGTCAGGATTAGATATATGTGCCG,"Intron (Zfhx4-203/Zfhx4, intron 1 of 10)",3,5218526,5413165,194640,1,Zfhx4-203,19045,Zfhx4-203;Zfhx4-202;Zfhx4-201;Zfhx4-204;Zfhx4-205,Zfhx4;Zfhx4;Zfhx4;Zfhx4;Zfhx4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,27,77,80892,ENSMUSG00000025255,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17201,cg01580126,-0.00000156,0.00000312,-0.501106421,0.616651858,loss,ns,-0.0000107,0.0000053,-2.026494835,0.043569948,neg,ns,0.001672522,0.001553244,1.076793162,0.282409932,pos,ns,0.549120033,-0.000121415,0.0000534,-2.273007573,0.023709812,neg,ns,0.913029593,Clk2,Clk2_Exon,3,89169668,89169717,89169716,89169717,50,-,CATCTACCACGTCGGGGACTGGCTACAAGAGCGATGTACAAGCCAAATCG,"Exon (Clk2-202/Clk2, exon 4 of 13)",3,89164795,89176921,12127,1,Clk2-202,4873,Clk2-202;Clk2-210;Clk2-201;Clk2-209;Clk2-207;Clk2-203;Clk2-204;Clk2-206;Clk2-211;Clk2-205,Clk2;Clk2;Clk2;Clk2;Clk2;Clk2;Clk2;Clk2;Clk2;Clk2,0;4851;0;0;0;0;0;0;0;-4238,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,10,12748,ENSMUSG00000068917,conserved gene and region,3,89169381,89169717,337,*,337,23,0.637982196,0.717685185,0.068249258,4.95E-14,CpGisland,TRUE,U10,Tr-S
3682,cg20075348,-0.0000145,0.00000425,-3.41325743,0.000727216,loss,ns,-0.0000146,0.00000723,-2.026328997,0.043587031,neg,ns,-0.006708643,0.002117478,-3.168223357,0.001686653,neg,ns,2.772974286,0.000151568,0.0000728,2.081412364,0.038216526,pos,ns,0.894045129,Gm12067,Gm12067_Intergenic_upstream,11,24983251,24983300,24983299,24983300,50,-,AGCACTGCTGTGATCGAATGAATGCGACCATATGAGCTATATTGGAGCCG,Distal Intergenic,11,24552438,24553962,1525,2,Gm12067-201,-429338,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,26,58,100417843,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9087,cg03587645,0.0000243,0.0000114,2.133000021,0.033709941,gain,ns,-0.0000393,0.0000194,-2.026234749,0.043596743,neg,ns,-0.007562302,0.005678431,-1.331759022,0.18391774,neg,ns,0.735376379,0.00010718,0.000195281,0.548848413,0.583504564,pos,ns,0.377123696,Gm8863,Gm8863_Exon,9,46830882,46830931,46830930,46830931,50,-,TACTTTAGATTTACTTTAACCTATTAACATGCTTGGTATTCATGGACACG,"Exon (Gm31614-201/Gm31614-201, exon 1 of 5)",9,46713233,46714158,926,2,Gm8863-201,-116773,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,20,667890,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16034,cg23801118,-0.0000033,0.00000179,-1.849226988,0.065376882,loss,ns,0.00000615,0.00000304,2.026190896,0.043601262,pos,ns,0.002311228,0.000889162,2.599331776,0.009787354,pos,ns,2.009334725,-0.0000931,0.0000306,-3.043155024,0.002541477,neg,ns,0.957923995,Acaca,Acaca_Intron,11,84272049,84272098,84272097,84272098,50,-,AATTCTGGAGTAGCTTTGAGCCAGGGCTGTTCATTTCTCAAGTAATCACG,"Intron (Acaca-202/Acaca, intron 25 of 55)",11,84173122,84401651,228530,1,Acaca-202,98927,Acaca-202;Acaca-201,Acaca;Acaca,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,28,28,107476,ENSMUSG00000020532,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7913,cg06191504,-0.0000251,0.00000727,-3.458887842,0.000618334,loss,ns,0.000025,0.0000123,2.026189123,0.043601445,pos,ns,0.005026355,0.003616454,1.389857121,0.165569515,pos,ns,0.781019623,-0.000128422,0.00012437,-1.032584646,0.302603205,neg,ns,0.855704772,Hif1an,Hif1an_Intron,19,44632663,44632712,44632711,44632712,50,-,CATGGAGTAATTTTATCCTTGTTTCCCTAATGATGCCATAATGGCGAGCG,"Intron (Gm35460-201/Gm35460-201, intron 3 of 6)",19,44562850,44563952,1103,1,Hif1an-202,69862,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,31,319594,ENSMUSG00000036450,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19405,cg07817024,0.0000126,0.00000411,3.063360781,0.002380708,gain,ns,0.0000142,0.00000699,2.025998429,0.043621102,pos,ns,0.004598941,0.002046774,2.24692207,0.025348365,pos,ns,1.596050045,0.00000889,0.0000704,0.126240289,0.899623556,pos,ns,0.091724576,Tbx15,Tbx15_Intron,3,99248842,99248891,99248890,99248891,50,-,AGGGTGAAGGCCGTTAAATTTTATTTCCAGTCCCAAAGGCAAAACCTGCG,"Intron (Tbx15-203/Tbx15, intron 1 of 2)",3,99240381,99313065,72685,1,Tbx15-203,8461,Tbx15-203;Tbx15-201,Tbx15;Tbx15,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,4,21384,ENSMUSG00000027868,conserved gene but different region,3,99248627,99248972,346,*,346,24,0.494219653,1.13909465,0.069364162,8.90E-15,CpGisland,TRUE,U13,Hc-P
18905,cg22215632,-0.00000686,0.00000196,-3.503280935,0.000527196,loss,ns,0.00000674,0.00000333,2.025640144,0.043658055,pos,ns,-0.00110439,0.000975038,-1.132664031,0.258230662,neg,ns,0.587992192,-0.0000272,0.0000335,-0.811694195,0.417589931,neg,ns,0.964349953,Dach1,Dach1_Intron,14,97868442,97868491,97868442,97868443,50,-,CGGCAGGACCTTAAAAAGGCTGGCATTTAGCATGACTTTTTGGAAAGTGA,"Intron (Dach1-201/Dach1, intron 6 of 10)",14,97786853,98169543,382691,2,Dach1-201,301052,Dach1-201;Dach1-202;Dach1-203,Dach1;Dach1;Dach1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,76,13134,ENSMUSG00000055639,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8097,cg04865751,0.000118756,0.0000115,10.32720495,1.11E-21,gain,yes,-0.0000396,0.0000195,-2.025525489,0.043669886,neg,ns,0.019600802,0.005723332,3.42471853,0.000698299,pos,ns,3.155958582,-0.000312473,0.000196825,-1.587565944,0.113403929,neg,ns,0.502033727,Ebf1,Ebf1_Intron,11,44741233,44741282,44741233,44741234,50,+,CGCAGTGAGCCAGCCCTCGCCACTTCCCAAAGTGAAGGGCCGCTGAAAGA,"Intron (Ebf1-203/Ebf1, intron 6 of 15)",11,44617317,45004995,387679,1,Ebf1-203,123916,Ebf1-203;Ebf1-202;Ebf1-201,Ebf1;Ebf1;Ebf1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,80,13591,ENSMUSG00000057098,conserved gene and region,11,44741176,44741251,76,*,76,9,0.723684211,0.904761905,0.118421053,8.12E-08,CpGisland,TRUE,NA,NRS
8611,cg12412302,0.0000166,0.000003,5.54452304,6.31E-08,gain,yes,-0.0000103,0.0000051,-2.025469122,0.043675704,neg,ns,-0.001290953,0.00149362,-0.864311787,0.388084919,neg,ns,0.411073234,0.0000715,0.0000514,1.391973604,0.164928222,pos,ns,0.933271644,Btrc,Btrc_Exon,19,45446645,45446694,45446693,45446694,50,+,GGTTAATCAATAGGCACCGTATGGCAGAGGGTCAGTAATCAGTGTCATCG,"Exon (Btrc-208/Btrc, exon 1 of 1)",19,45363734,45507736,144003,1,Btrc-204,82911,Btrc-204;Btrc-201;Btrc-210;Btrc-202;Btrc-203;Btrc-208;Btrc-205;Btrc-209;Gm6807-201,Btrc;Btrc;Btrc;Btrc;Btrc;Btrc;Btrc;Btrc;Gm6807,0;0;0;0;0;0;0;0;4501,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,30,98,12234,ENSMUSG00000025217,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10243,cg08225062,-0.0000413,0.0000119,-3.469428927,0.000595448,loss,ns,0.000041,0.0000202,2.025432733,0.043679459,pos,ns,-0.017747576,0.005923653,-2.99605234,0.002955725,neg,ns,2.529335958,0.000601746,0.000203714,2.95387858,0.003378238,pos,ns,0.705064403,Tcf7,Tcf7_Intron,11,52265707,52265756,52265755,52265756,50,+,TGCAGGCTCAGGTGAAAAATAAACACAGTCGGCATTTTCCCTGTAGACCG,"Intron (Tcf7-201/Tcf7, intron 2 of 9)",11,52252371,52282571,30201,2,Tcf7-201,16815,Tcf7-201;Tcf7-202;Tcf7-203,Tcf7;Tcf7;Tcf7,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,8,21414,ENSMUSG00000000782,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16653,cg04207566,0.0000528,0.00000467,11.30217231,4.93E-25,gain,yes,-0.0000161,0.00000794,-2.025390135,0.043683857,neg,ns,0.004120644,0.002324829,1.772450395,0.077301895,pos,ns,1.111809862,-0.0000261,0.00008,-0.327044918,0.743854631,neg,ns,0.092843769,Tbx2,Tbx2_fiveUTR,11,85832800,85832849,85832848,85832849,50,+,TGTGAGATAGTCACAGTTTTCCAGAGATCACGACAAGATCTAACCAGTCG,Promoter (<=1kb),11,85832551,85841948,9398,1,Tbx2-201,249,Tbx2-201,Tbx2,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,12,14,21385,ENSMUSG00000000093,mapped to different genes,11,85832848,85833430,583,*,583,90,0.804459691,0.963848782,0.154373928,7.11E-88,CpGisland,TRUE,U3,Pr-B
11100,cg14541860,-0.0000101,0.00000925,-1.089226009,0.27690024,loss,ns,0.0000318,0.0000157,2.025290138,0.04369418,pos,ns,0.003273807,0.004604808,0.710954041,0.477647281,pos,ns,0.32089269,0.0000212,0.000158359,0.134078011,0.89342789,pos,ns,0.808517163,Nkx2-9,Nkx2-9_Intron,12,56590244,56590293,56590244,56590245,50,+,CGATTGAATTAATGGATACTGCCTTTCAATATTGGAAGTGTTATTTTTCA,"Intron (Gm26973-202/Gm26973-202, intron 2 of 2)",12,56611389,56613284,1896,2,Nkx2-9-201,22991,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,3,18094,ENSMUSG00000058669,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10107,cg12703184,0.00000629,0.00000372,1.690710647,0.091897208,gain,ns,0.0000128,0.00000632,2.02514428,0.043709242,pos,ns,0.007856357,0.001850973,4.244447088,0.000029,pos,ns,4.537816785,-0.00021722,0.0000637,-3.412463871,0.000729259,neg,ns,0.894402821,Gm19197,Gm19197_Intergenic_downstream,17,52177471,52177520,52177471,52177472,50,-,CGATGGAATCAATTAAAGATATTTTTGACCGCCTAATGGTTTATGGGAAT,Distal Intergenic,17,52008967,52009569,603,1,Gm19197-201,168553,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,11,100418416,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1124,cg26842682,-0.000024,0.00000696,-3.451382714,0.000635127,loss,ns,0.000024,0.0000118,2.024775464,0.043747347,pos,ns,0.001133998,0.003465714,0.327204827,0.743733807,pos,ns,0.128582477,-0.000133638,0.000119186,-1.121259743,0.263045125,neg,ns,0.863468761,Ikzf1,Ikzf1_Intron,11,11699689,11699738,11699737,11699738,50,+,TTTTGATTGCTGATTGTACGCGTGTCACCAAGCTGACTCAAGGTTCATCG,"Intron (Ikzf1-206/Ikzf1, intron 1 of 2)",11,11685003,11707800,22798,1,Ikzf1-206,14686,Ikzf1-206;Ikzf1-205;Ikzf1-203;Ikzf1-204;Ikzf1-202;Ikzf1-201,Ikzf1;Ikzf1;Ikzf1;Ikzf1;Ikzf1;Ikzf1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,15,22778,ENSMUSG00000018654,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12176,cg12896068,-0.00000221,0.00000292,-0.75732443,0.449430763,loss,ns,0.0000101,0.00000497,2.024708138,0.043754305,pos,ns,0.003999767,0.001455673,2.74770927,0.006352683,pos,ns,2.197042828,-0.000117868,0.0000501,-2.354519506,0.019170085,neg,ns,0.94483636,Map2k5,Map2k5_Intron,9,63217491,63217540,63217539,63217540,50,-,ACATAATGAAAATACACAAATGTTAATAGCTCGCTTCTCATTTATAGGCG,"Intron (Map2k5-201/Map2k5, intron 17 of 21)",9,63163768,63377902,214135,2,Map2k5-201,160362,Map2k5-201;Map2k5-202,Map2k5;Map2k5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,34,37,23938,ENSMUSG00000058444,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25279,cg18454322,0.000036,0.0000186,1.936611059,0.053701468,gain,ns,0.0000639,0.0000315,2.024496428,0.043776194,pos,ns,0.01538825,0.00924154,1.665117622,0.096899553,pos,ns,1.013678227,-0.0000907,0.000317816,-0.285433184,0.775502903,neg,ns,0.560462536,Gm43559,Gm43559_Intergenic_upstream,3,134302872,134302921,134302872,134302873,50,+,CGCCTCATACATATTGATTTCTGACACCAAGCAGCAGTGAAAGCCCCCGT,Distal Intergenic,3,134272045,134272510,466,2,Gm43559-201,-30362,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,7,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26059,cg14352765,-0.0000167,0.00000896,-1.858013166,0.064115036,loss,ns,0.0000308,0.0000152,2.024169515,0.043810012,pos,ns,0.004540191,0.004460467,1.017873447,0.309531828,pos,ns,0.509294688,-0.000388738,0.000153395,-2.53422747,0.011761571,neg,ns,0.742241979,Gm2505,Gm2505_Intergenic_upstream,3,143507261,143507310,143507261,143507262,50,-,CGCTCAGATGAGACCAGACATGAGGAGATTGGTAGTGACAAGTGTTGTCA,Distal Intergenic,3,143872995,143873819,825,1,Gm2505-201,-365734,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,37,100039938,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14419,cg00253748,-0.00000203,0.0000027,-0.750037867,0.453800751,loss,ns,-0.00000929,0.00000459,-2.024087894,0.043818459,neg,ns,0.00049543,0.00134422,0.36856298,0.712705061,pos,ns,0.147090157,0.00000179,0.0000462,0.038725677,0.969134029,pos,ns,0.924513182,Fam98a,Fam98a_Exon,17,75541255,75541304,75541303,75541304,50,-,TTCCTAGAGCAATACATATGCCTTTCAACTCTTGAAAGACCTCACTACCG,"Exon (Fam98a-201/Fam98a, exon 4 of 8)",17,75537086,75551946,14861,2,Fam98a-201,10642,Fam98a-201;Fam98a-204;Fam98a-202;Fam98a-205;Fam98a-203,Fam98a;Fam98a;Fam98a;Fam98a;Fam98a,0;0;-683;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,6,72722,ENSMUSG00000002017,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2997,cg00169860,-0.00000566,0.00000314,-1.805800258,0.071919451,loss,ns,0.0000108,0.00000533,2.023983551,0.04382926,pos,ns,0.004085944,0.001560354,2.618600468,0.009262909,pos,ns,2.03325261,-0.000151958,0.0000537,-2.831840537,0.004930875,neg,ns,0.922388518,Lrmda,Lrmda_Intron,14,22270315,22270364,22270315,22270316,50,-,CGGATTGTTTGTCCAAGCATATCCTTTGATTTGCTATGAAATTTATTGTT,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,250603,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206,Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11456,cg12585803,-0.0000031,0.00000372,-0.834630723,0.404568379,loss,ns,-0.0000128,0.00000632,-2.023956787,0.04383203,neg,ns,-0.005374509,0.001850864,-2.903783469,0.003951552,neg,ns,2.403232301,0.0000593,0.0000637,0.930869933,0.352645193,pos,ns,0.911178791,Hnrnpk,Hnrnpk_threeUTR,13,58397502,58397551,58397550,58397551,50,-,ATTTACAATGCGGCAAATATGCAACACTTGAAGCTGTGCTCCTTCCATCG,3' UTR,13,58391142,58403343,12202,2,Hnrnpk-202,5792,Hnrnpk-202;Hnrnpk-224;Hnrnpk-221;Hnrnpk-232;Hnrnpk-216;Hnrnpk-201;Hnrnpk-205;Hnrnpk-217;Hnrnpk-206;Hnrnpk-209;Hnrnpk-213;Hnrnpk-227;Hnrnpk-234;Hnrnpk-233;Hnrnpk-228;Hnrnpk-214;Hnrnpk-215;Hnrnpk-211;Hnrnpk-208;Hnrnpk-212;Hnrnpk-231;Hnrnpk-230;Hnrnpk-203;Hnrnpk-218;Hnrnpk-226;Hnrnpk-207;Hnrnpk-219;Hnrnpk-225;Hnrnpk-229;Hnrnpk-223;Hnrnpk-220;Hnrnpk-210;Hnrnpk-204;Hnrnpk-222;Rmi1-205;Rmi1-201,Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Rmi1;Rmi1,0;0;0;0;0;0;0;-3634;-2717;-3527;-2304;-3418;-3613;-3332;-2806;0;-1782;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;4951;4504;-4697;-4712,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,19,15387,ENSMUSG00000021546,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3042,cg20003348,0.0000179,0.00000443,4.042421597,0.0000668,gain,ns,0.0000152,0.00000753,2.023715391,0.043857027,pos,ns,0.0024284,0.002205498,1.101066381,0.271721963,pos,ns,0.565875256,0.00000616,0.0000758,0.081158202,0.935368511,pos,ns,0.855883225,Lrmda,Lrmda_Intron,14,22474275,22474324,22474275,22474276,50,-,CGGCAAGATGATATGAAGTAAATCAAGGTACGAGTAATGAAAGACTGAGA,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,454563,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206;Lrmda-202,Lrmda;Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3138,cg05813026,-0.00000278,0.00000131,-2.11954133,0.034839272,loss,ns,0.00000451,0.00000223,2.02366217,0.043862539,pos,ns,0.001539951,0.000652412,2.36039871,0.018874336,pos,ns,1.72412831,-0.000055,0.0000224,-2.449834094,0.014845053,neg,ns,0.969928651,Abi1,Abi1_Exon,2,22953484,22953533,22953532,22953533,50,-,AAATTGAGCAGTCACAGAGGGAGTTCGTCTGTATCCACCAGAAGATGTCG,"Exon (Abi1-206/Abi1, exon 7 of 10)",2,22940073,23040195,100123,2,Abi1-206,86662,Abi1-206;Abi1-209;Abi1-211;Abi1-205;Abi1-212;Abi1-202;Abi1-208;Abi1-204;Abi1-201;Abi1-203;Abi1-215;Abi1-210;Abi1-214;Abi1-213,Abi1;Abi1;Abi1;Abi1;Abi1;Abi1;Abi1;Abi1;Abi1;Abi1;Abi1;Abi1;Abi1;Abi1,0;0;0;0;0;0;0;0;0;0;0;-3182;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,11308,ENSMUSG00000058835,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17851,cg08200814,-0.0000108,0.0000057,-1.894207167,0.059128169,loss,ns,0.0000196,0.00000969,2.023660732,0.043862688,pos,ns,-0.00134306,0.002838407,-0.473173829,0.636422174,neg,ns,0.196254697,-0.0000327,0.0000976,-0.335107736,0.737770463,neg,ns,0.857266514,Irx5,Irx5_Intergenic_upstream,8,92095119,92095168,92095167,92095168,50,+,TTTGCTCTTTTGTCTGGATTCCCTGGCTGACAATCTGCTCGGTGAGCTCG,Distal Intergenic,8,92357625,92376286,18662,1,Irx5-202,-262457,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,30,54352,ENSMUSG00000031737,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3724,cg02222480,0.0000271,0.00000925,2.930878681,0.003631287,gain,ns,0.0000318,0.0000157,2.023268991,0.043903283,pos,ns,0.001705029,0.004605225,0.370237922,0.711458052,pos,ns,0.147850701,0.0000596,0.000158373,0.376543091,0.706770778,pos,ns,0.796126377,Pou2f2,Pou2f2_Intron,7,25163675,25163724,25163723,25163724,50,+,CCTTGCCGATTCCCAGTCAAAACAATTAGCCGCGCTGAGTGTTGAACACG,"Intron (Pou2f2-208/Pou2f2, intron 1 of 4)",7,25120618,25179726,59109,2,Pou2f2-208,16002,Pou2f2-208,Pou2f2,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,29,18987,ENSMUSG00000008496,conserved gene and region,7,25163636,25163773,138,*,138,15,0.543478261,1.493506494,0.108695652,2.55E-12,CpGisland,TRUE,U11,Tr-P
23953,cg17735058,0.000000203,0.000000799,0.25447356,0.799298448,gain,ns,-0.00000275,0.00000136,-2.023255641,0.043904667,neg,ns,-0.001238828,0.000397524,-3.116360293,0.002002427,neg,ns,2.698443351,0.0000284,0.0000137,2.080191001,0.038329178,pos,ns,0.984785011,Ppip5k1,Ppip5k1_Exon,2,121323199,121323248,121323247,121323248,50,+,AGGCATTCGGGGTCATCCTGGCCTGAGCGCAGCCAGTTCCGGAAGAGGCG,"Exon (Ppip5k1-210/Ppip5k1, exon 4 of 5)",2,121310561,121351017,40457,2,Ppip5k1-201,27769,Ppip5k1-201;Ppip5k1-205;Ppip5k1-204;Ppip5k1-203;Ppip5k1-202;Ppip5k1-209;Ppip5k1-210;Ppip5k1-206;Ppip5k1-218,Ppip5k1;Ppip5k1;Ppip5k1;Ppip5k1;Ppip5k1;Ppip5k1;Ppip5k1;Ppip5k1;Ppip5k1,0;0;0;0;0;0;0;0;13911,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,327655,ENSMUSG00000033526,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10923,cg05316006,0.000000366,0.00000214,0.170936627,0.864385113,gain,ns,0.00000736,0.00000364,2.023033831,0.043927667,pos,ns,0.001742812,0.001066327,1.634407344,0.103188397,pos,ns,0.986369132,-0.000034,0.0000367,-0.925990219,0.35517137,neg,ns,0.969717877,Tcf7l2,Tcf7l2_Intron,19,55888713,55888762,55888761,55888762,50,+,GCCTTTAGGGAAATGCGCTAAAACCCTAATATGTCCACTACCCCCAAGCG,"Intron (Tcf7l2-213/Tcf7l2, intron 4 of 13)",19,55741820,55933229,191410,1,Tcf7l2-213,146893,Tcf7l2-213;Tcf7l2-201;Tcf7l2-208;Tcf7l2-211;Tcf7l2-212;Tcf7l2-206;Tcf7l2-204;Tcf7l2-205;Tcf7l2-222;Tcf7l2-215;Tcf7l2-214;Tcf7l2-207;Tcf7l2-202;Tcf7l2-209;Tcf7l2-210;Tcf7l2-217;Tcf7l2-220,Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,55,88,21416,ENSMUSG00000024985,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21390,cg22092869,-0.00000166,0.00000419,-0.396916482,0.691702164,loss,ns,0.0000144,0.00000712,2.022931555,0.043938276,pos,ns,0.005483426,0.002084687,2.630334947,0.008956009,pos,ns,2.047885469,-0.000152702,0.0000717,-2.129961957,0.033962081,neg,ns,0.547350176,Helz,Helz_Exon,11,107604063,107604112,107604111,107604112,50,+,TAGCCTGCAAGAATGCTGTATCGTGTAGCATTGCTTTATGATGCTCATCG,"Exon (Helz-202/Helz, exon 12 of 30)",11,107547956,107672287,124332,1,Helz-202,56107,Helz-202;Helz-201;Helz-203,Helz;Helz;Helz,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,8,78455,ENSMUSG00000020721,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11357,cg14084637,-0.00000261,0.00000072,-3.627430602,0.000334614,loss,ns,-0.00000247,0.00000122,-2.02270032,0.043962269,neg,ns,0.000523454,0.000358417,1.460461085,0.14517612,pos,ns,0.838104814,-0.000036,0.0000123,-2.918005874,0.003780363,neg,ns,0.991882,Clk3,Clk3_Exon,9,57758746,57758795,57758746,57758747,50,-,CGCCATCCGACCAATCGCATGGTAGGCGGTTCCGATTGACAGATTGAGGT,"Exon (Clk3-207/Clk3, exon 3 of 12)",9,57750624,57765103,14480,2,Clk3-207,6308,Clk3-207;Clk3-201;Clk3-205;Clk3-203;Clk3-206;Clk3-209;Clk3-208;Clk3-204,Clk3;Clk3;Clk3;Clk3;Clk3;Clk3;Clk3;Clk3,0;0;0;0;-3425;0;5513;6058,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,14,102414,ENSMUSG00000032316,conserved gene and region,9,57758611,57758779,169,*,169,14,0.615384615,0.908602151,0.082840237,7.36E-10,CpGisland,TRUE,U12,Tr-I
11729,cg13916797,0.000000455,0.000000937,0.485828878,0.62743171,gain,ns,0.00000322,0.00000159,2.022674351,0.043964964,pos,ns,0.001315345,0.000466215,2.821330381,0.005091107,pos,ns,2.29318776,-0.0000354,0.000016,-2.208836786,0.027917213,neg,ns,0.97382807,Marchf7,Marchf7_Exon,2,60247488,60247537,60247488,60247489,50,+,CGGTAATAAGCCAGATTTTACTCAGGTGTGTGAGAGCACTTGCCTTAAGT,"Exon (Marchf7-208/Marchf7, exon 5 of 6)",2,60209887,60249211,39325,1,Marchf7-203,37601,Cd302-201;Cd302-202;Marchf7-203;Marchf7-209;Marchf7-202;Marchf7-201;Marchf7-208;Marchf7-206;Marchf7-204;Marchf7-207,Cd302;Cd302;Marchf7;Marchf7;Marchf7;Marchf7;Marchf7;Marchf7;Marchf7;Marchf7,36881;36951;0;0;0;0;0;10600;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13883,cg11526959,0.0000224,0.00000482,4.643533861,0.00000507,gain,ns,0.0000166,0.00000819,2.022644833,0.043968028,pos,ns,0.008773312,0.002400705,3.65447387,0.000302556,pos,ns,3.519194874,-0.0000596,0.0000826,-0.721880946,0.470911822,neg,ns,0.109914157,Irx4,Irx4_Intron,13,73263245,73263294,73263245,73263246,50,-,CGTCATCATTAATTAGAGGGTGACCCTGGGGCGATTCACAGGTCTGAACC,"Intron (Irx4-202/Irx4, intron 1 of 5)",13,73260479,73269608,9130,1,Irx4-202,2766,Irx4-202;Irx4-201,Irx4;Irx4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,7,50916,ENSMUSG00000021604,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
22819,cg05338309,-0.000000865,0.00000351,-0.246082369,0.805781325,loss,ns,0.0000121,0.00000597,2.022613085,0.043971324,pos,ns,-0.001678817,0.001748851,-0.959954479,0.337826239,neg,ns,0.471306621,0.000125964,0.0000601,2.094420446,0.037034181,pos,ns,0.937883026,Faah,Faah_Intron,4,115977594,115977643,115977594,115977595,50,-,CGGATGGTTAATAGGGGAGATAACAGGATTCATAAGGGAAATTTATCGGT,"Intron (Faah-202/Faah, intron 13 of 14)",4,115967145,116017675,50531,2,Faah-202,40032,Faah-202,Faah,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,20,14073,ENSMUSG00000034171,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
6649,cg12471304,0.00000194,0.00000782,0.247881681,0.804390064,gain,ns,0.0000269,0.0000133,2.022603161,0.043972354,pos,ns,0.004397777,0.003893189,1.129607991,0.259514745,pos,ns,0.585837962,-0.0000879,0.000133886,-0.656351626,0.512084799,neg,ns,0.66538826,Uri1,Uri1_Intergenic_downstream,7,37916918,37916967,37916918,37916919,50,+,CGGGATTTCTGAGCATAACAGAAATGTCAGGCGGATCTTAATGAAAGGCT,Distal Intergenic,7,37961301,37962528,1228,2,Uri1-203,45561,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,19,27,19777,ENSMUSG00000030421,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27680,cg24455383,-0.00000213,0.0000033,-0.644453518,0.519757962,loss,ns,0.0000113,0.0000056,2.022268381,0.044007117,pos,ns,0.005161392,0.001641749,3.143837915,0.001828907,pos,ns,2.737808438,-0.000142167,0.0000565,-2.518038644,0.01230455,neg,ns,0.943325492,Akt3,Akt3_Exon,1,177067290,177067339,177067290,177067291,50,+,CGGTCCTCAGAGAACACCCGCTCTCTCGACAAATGGAAAAACAGCTGCAG,"Exon (Akt3-201/Akt3, exon 8 of 13)",1,177020073,177248805,228733,2,Akt3-201,181466,Akt3-201;Akt3-203;Akt3-202,Akt3;Akt3;Akt3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,14,23797,ENSMUSG00000019699,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23546,cg13747168,0.0000132,0.0000029,4.544977367,0.00000789,gain,ns,0.00000997,0.00000493,2.022159951,0.044018382,pos,ns,0.006470258,0.001444006,4.480770382,0.0000105,pos,ns,4.979834588,-0.000129323,0.0000497,-2.604205858,0.00965224,neg,ns,0.072998973,Sp8,Sp8_Promoter,12,118841750,118841799,118841798,118841799,50,-,TTGTAATTAAACACAATTCCCAGAGTAACATTTATCTTCCCAAAACTGCG,Promoter (4-5kb),12,118846329,118852576,6248,1,Sp8-201,-4579,Sp8-201,Sp8,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,27,29,320145,ENSMUSG00000048562,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
17700,cg07406191,0.00000212,0.00000488,0.435336439,0.663621178,gain,ns,-0.0000168,0.00000829,-2.022140823,0.044020369,neg,ns,-0.007810573,0.002428006,-3.216866561,0.001432949,neg,ns,2.843769154,0.000246679,0.0000835,2.954281784,0.003373949,pos,ns,0.086846873,Zic4,Zic4_threeUTR,9,91387885,91387934,91387933,91387934,50,+,TGAAGTGGGAGTTATTATCTGAGACATTCCTGCTTGTCGTCCTAACAACG,3' UTR,9,91378642,91389348,10707,1,Zic4-201,9243,Zic4-204;Zic4-209;Zic4-205;Zic4-201;Zic4-202,Zic4;Zic4;Zic4;Zic4;Zic4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,18,55,22774,ENSMUSG00000036972,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
22583,cg18221639,-0.000000713,0.00000741,-0.096166319,0.923450618,loss,ns,0.0000255,0.0000126,2.022096523,0.044024972,pos,ns,0.000102043,0.003689021,0.027661144,0.977950213,pos,ns,0.009683254,-0.0000795,0.000126865,-0.626728124,0.531298723,neg,ns,0.842772446,Wwox,Wwox_Intron,8,115296779,115296828,115296827,115296828,50,+,TATTAAACGCATGCTCAATCTAGTTTTATTTCTTCAAATTTACTCAGTCG,"Intron (Wwox-201/Wwox, intron 8 of 8)",8,114439655,115352708,913054,1,Wwox-201,857124,Wwox-201;Wwox-209,Wwox;Wwox,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,32,32,80707,ENSMUSG00000004637,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27370,cg15158437,-0.00000247,0.00000122,-2.025678194,0.04365413,loss,ns,0.00000419,0.00000207,2.02208217,0.044026464,pos,ns,0.000666997,0.000606621,1.099528121,0.272390916,pos,ns,0.56480738,-0.0000151,0.0000209,-0.725923262,0.468433506,neg,ns,0.957809453,Zmynd8,Zmynd8_Exon,2,165846057,165846106,165846057,165846058,50,+,CGATGTCAGTCTCAGACACTTAGCGTGATAAACCCGGGGACAGAGCTCAC,"Exon (Zmynd8-205/Zmynd8, exon 3 of 22)",2,165784152,165858173,74022,2,Zmynd8-205,12067,Zmynd8-205;Zmynd8-221;Zmynd8-203;Zmynd8-220;Zmynd8-201;Zmynd8-206;Zmynd8-218;Zmynd8-202;Zmynd8-219;Zmynd8-204;Zmynd8-215;Zmynd8-209;Zmynd8-211;Zmynd8-210,Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,12,228880,ENSMUSG00000039671,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4554,cg01726701,-0.00000655,0.00000207,-3.172830102,0.001660956,loss,ns,0.0000071,0.00000351,2.021835289,0.044052124,pos,ns,0.001783388,0.001028197,1.734480864,0.083826811,pos,ns,1.076617055,-0.000115456,0.0000354,-3.265184955,0.001216343,neg,ns,0.949792625,Gm10275,Gm10275_Intergenic_upstream,10,29725444,29725493,29725492,29725493,50,-,TTAACTGATTGAGTCAATGGAAACCAGCCCTAATTGTTGCTTTATAGGCG,Distal Intergenic,10,29698746,29699380,635,2,Gm10275-201,-26113,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,19897,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25122,cg01236822,-0.0000245,0.00000327,-7.493108466,7.08E-13,loss,yes,0.0000112,0.00000555,2.021826368,0.044053052,pos,ns,-0.000114067,0.001625351,-0.070180047,0.944095605,neg,ns,0.024984024,0.0000166,0.0000559,0.29617947,0.767291341,pos,ns,0.93230657,Ahdc1,Ahdc1_Intron,4,133025854,133025903,133025854,133025855,50,-,CGTGATTTTATTCCACGTGTCACAGAGTCTGAGATTAACTTGCTCACCAG,"Intron (Ahdc1-210/Ahdc1, intron 2 of 3)",4,133011260,133060820,49561,1,Ahdc1-210,14594,Ahdc1-210;Ahdc1-203;Ahdc1-204;Ahdc1-205;Ahdc1-207;Ahdc1-211;Ahdc1-209;Ahdc1-206;Ahdc1-201,Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,35,49,230793,ENSMUSG00000037692,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6909,cg06170661,-0.0000142,0.00000283,-5.007008025,0.000000929,loss,yes,0.00000972,0.00000481,2.02174244,0.044061778,pos,ns,-0.001836037,0.001408411,-1.303623001,0.193329425,neg,ns,0.713702041,0.0000628,0.0000484,1.297577782,0.195397191,pos,ns,0.930215246,Fyn,Fyn_Exon,10,39515611,39515660,39515611,39515612,50,-,CGGACAGAAGATGACCTGAGTTTTCACAAAGGAGAAAAATTTCAAATATT,"Exon (Fyn-208/Fyn, exon 5 of 5)",10,39368855,39515668,146814,1,Fyn-208,146756,Fyn-208;Fyn-201;Fyn-202;Fyn-204;Fyn-209;Fyn-205;Fyn-207;Fyn-206,Fyn;Fyn;Fyn;Fyn;Fyn;Fyn;Fyn;Fyn,0;0;0;0;95602;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,6,14360,ENSMUSG00000019843,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
421,cg10000359,0.000000151,0.00000291,0.051852487,0.958679629,gain,ns,-0.00000998,0.00000494,-2.021609197,0.044075635,neg,ns,-0.003980647,0.001446331,-2.752237534,0.006267597,neg,ns,2.202898919,0.000143446,0.0000497,2.883967793,0.004201867,pos,ns,0.91122141,Pcnx3,Pcnx3_Exon,19,5672610,5672659,5672610,5672611,50,-,CGAACGTGTCAAGTGCTCATAGAAGATGGAGTTGAGGTTGTTGTCATCAG,"Exon (Pcnx3-202/Pcnx3, exon 26 of 35)",19,5664635,5688908,24274,2,Pcnx3-202,16249,Pcnx3-202;Pcnx3-211;Pcnx3-201;Pcnx3-210;Pcnx3-208,Pcnx3;Pcnx3;Pcnx3;Pcnx3;Pcnx3,0;0;0;0;6918,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,7,104401,ENSMUSG00000054874,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16385,cg06197482,-0.0000044,0.00000169,-2.608699232,0.009529162,loss,ns,0.00000579,0.00000287,2.021514038,0.044085534,pos,ns,0.001239558,0.000839459,1.476614682,0.140794043,pos,ns,0.851415719,-0.0000352,0.0000289,-1.218631289,0.223910728,neg,ns,0.048019006,Nfix,Nfix_Promoter,8,84799568,84799617,84799616,84799617,50,+,TTCTTAGCCCCGCTCCCATGTGAGGCCTAAACAAAGACTTTGGGGAGACG,Promoter (<=1kb),8,84708614,84800140,91527,2,Nfix-201,523,Nfix-201;Nfix-202;Nfix-205,Nfix;Nfix;Nfix,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,1,49,18032,ENSMUSG00000001911,conserved gene and region,8,84799136,84800802,1667,*,1667,246,0.75164967,1.053664478,0.147570486,3.04E-233,CpGisland,TRUE,NA,NRS
19371,cg19355776,-0.0000434,0.0000129,-3.356033696,0.000889072,loss,ns,0.0000445,0.000022,2.021144048,0.044124039,pos,ns,-0.004499486,0.006443239,-0.698326608,0.485496468,neg,ns,0.313813925,-0.000000389,0.000221582,-0.001756283,0.998599819,neg,ns,0.475398219,Cdh8,Cdh8_Exon,8,99111723,99111772,99111771,99111772,50,+,TCAGGGGCGTTGTCATTGACATCCAGCACTTTAATAGCAACAGGTACTCG,"Exon (Cdh8-207/Cdh8, exon 9 of 13)",8,99024471,99416427,391957,2,Cdh8-207,304655,Cdh8-207;Cdh8-204;Cdh8-201;Cdh8-206;Cdh8-203,Cdh8;Cdh8;Cdh8;Cdh8;Cdh8,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,16,12564,ENSMUSG00000036510,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24141,cg25217357,-0.00000366,0.00000111,-3.310701845,0.001040476,loss,ns,0.0000038,0.00000188,2.021042065,0.044134658,pos,ns,0.001061889,0.000550213,1.929958418,0.054524146,pos,ns,1.263411125,-0.0000346,0.0000189,-1.826980916,0.068664037,neg,ns,0.033121456,D630033A02Rik,D630033A02Rik_Exon,10,122985619,122985668,122985619,122985620,50,+,CGGCGCTGAGCATCACCAGCACTAGCAAGGCAGTAGCTTGCGCAGTTATC,Promoter (<=1kb),10,122985074,122985831,758,2,D630033A02Rik-202,163,D630033A02Rik-202;D630033A02Rik-201,D630033A02Rik;D630033A02Rik,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,402753,NA,mapped to different genes,10,122985225,122985694,470,*,470,59,0.644680851,1.224498808,0.125531915,1.84E-51,CpGisland,TRUE,U1,Pr-A
4213,cg06649236,-0.0000461,0.0000145,-3.182960655,0.001605714,loss,ns,0.0000497,0.0000246,2.020995237,0.044139534,pos,ns,-0.004762886,0.007209997,-0.660594756,0.509362812,neg,ns,0.292972765,-0.000216124,0.000247951,-0.871640786,0.384078922,neg,ns,0.641219494,Gm7729,Gm7729_Intergenic_downstream,18,27651329,27651378,27651329,27651330,50,+,CGTTTTACTGTAGAAAGAATCTTACTTTAATTATGTCATAATTGTTTGGA,Distal Intergenic,18,27598644,27599756,1113,1,Gm7729-201,52685,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,22,665646,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8516,cg00546281,0.0000262,0.0000157,1.664153295,0.097092233,gain,ns,0.000054,0.0000267,2.020919055,0.044147468,pos,ns,0.002254627,0.007826633,0.288071137,0.773484787,pos,ns,0.111548224,0.000328233,0.000269157,1.219483926,0.223587594,pos,ns,0.441990075,Lbx1,Lbx1_Intergenic_upstream,19,45272475,45272524,45272475,45272476,50,+,CGATTTTCACCGACAGAACTTCAATAAATCTTGTTTTGAGAAAAATGATA,Distal Intergenic,19,45232684,45235812,3129,2,Lbx1-201,-36663,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,15,50,16814,ENSMUSG00000025216,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14036,cg16767270,-0.00000137,0.00000425,-0.323052388,0.746873363,loss,ns,-0.0000146,0.00000721,-2.020849979,0.044154664,neg,ns,-0.007450642,0.00211297,-3.52614677,0.000485317,neg,ns,3.31397421,0.000201931,0.0000727,2.778941549,0.005786463,pos,ns,0.870696467,Pnkd,Pnkd_threeUTR,1,74353609,74353658,74353657,74353658,50,-,TGCATCTCTGTATTTCTGCGCCTAGCACGGTGCCTAGCACACAGTAGGCG,3' UTR,1,74285045,74353684,68640,1,Pnkd-201,68564,Pnkd-201;Pnkd-203;Pnkd-202,Pnkd;Pnkd;Pnkd,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,2,56695,ENSMUSG00000026179,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18799,cg14091940,0.0000188,0.00000526,3.580672932,0.000397694,gain,ns,-0.0000181,0.00000893,-2.020658624,0.044174601,neg,ns,-0.005186092,0.002617265,-1.981492903,0.048419189,neg,ns,1.314982486,0.000144573,0.00009,1.606237475,0.109239843,pos,ns,0.713120354,Arhgap23,Arhgap23_Exon,11,97463587,97463636,97463587,97463588,50,+,CGTGTTCCGGCTGACCACCGCTGACTTCTGTGAATATCCCTTTCAGGCTG,"Exon (Arhgap23-203/Arhgap23, exon 12 of 24)",11,97415533,97502402,86870,1,Arhgap23-203,48054,Arhgap23-203;Arhgap23-202;Arhgap23-204,Arhgap23;Arhgap23;Arhgap23,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,8,58996,ENSMUSG00000049807,mapped to different genes,11,97463388,97463699,312,*,312,36,0.692307692,0.98457223,0.115384615,4.29E-30,CpGisland,TRUE,U10,Tr-S
12114,cg01626791,0.00000126,0.000000624,2.020100652,0.04423278,gain,ns,-0.00000214,0.00000106,-2.020643929,0.044176132,neg,ns,-0.0000375,0.000310416,-0.12089382,0.903853457,neg,ns,0.043901976,0.00000492,0.0000107,0.460542956,0.64544944,pos,ns,0.009781505,Pias1,Pias1_fiveUTR,9,62980828,62980877,62980876,62980877,50,-,GAATTCGAGCTGCGCTTTACCTTTAGTTCCGCACTGTCCGCCATCTTGCG,Promoter (<=1kb),9,62878368,62980879,102512,2,Pias1-201,2,Pias1-201;Pias1-202;Pias1-205,Pias1;Pias1;Pias1,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,12,56469,ENSMUSG00000032405,conserved gene and region,9,62980517,62981139,623,*,623,66,0.706260032,0.90840403,0.105939005,4.79E-52,CpGisland,TRUE,NA,NRS
23710,cg18370613,-0.0000306,0.00000861,-3.558886539,0.000430754,loss,ns,0.0000296,0.0000146,2.020613551,0.044179298,pos,ns,0.000412756,0.00428565,0.096311166,0.923335675,pos,ns,0.034640384,-0.000129384,0.000147383,-0.87787649,0.380690613,neg,ns,0.661232791,Gm18384,Gm18384_Intergenic_downstream,3,120055587,120055636,120055587,120055588,50,-,CGGGGGTAATAGCAGACTTAATCAAGAAAGACAAATGGGATTCATTAACA,Distal Intergenic,3,119968731,119969538,808,1,Gm18384-201,86905,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,5,100417046,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22786,cg21810283,0.0000352,0.0000114,3.095528055,0.002143965,gain,ns,0.0000391,0.0000193,2.020299313,0.044212058,pos,ns,0.005895071,0.005663446,1.040898207,0.298733908,pos,ns,0.524715479,0.0000528,0.000194765,0.27092631,0.786628014,pos,ns,0.805032554,Dmbx1,Dmbx1_Promoter,4,115945959,115946008,115945959,115945960,50,-,CGCGCTGGGGAGATTTGTCATCTGTGCTCAGCGGGTGACTCTATCTGCAG,Promoter (6-7kb),4,115915119,115939926,24808,2,Dmbx1-203,-6082,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,9,42,140477,ENSMUSG00000028707,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
6529,cg13779998,-0.00000525,0.00000944,-0.556365079,0.578362683,loss,ns,0.0000324,0.000016,2.020286364,0.044213409,pos,ns,0.001149862,0.004698422,0.24473357,0.806824647,pos,ns,0.093220843,0.00000608,0.000161578,0.037655997,0.969986198,pos,ns,0.839481281,Zfp536,Zfp536_Intron,7,37628486,37628535,37628486,37628487,50,-,CGTTAATATTTAAAAAACAAAGAGGTGGCAGATTGTCATTTTTGTGTCAG,"Intron (Zfp536-202/Zfp536, intron 4 of 6)",7,37479104,37769624,290521,2,Zfp536-202,141089,Zfp536-202;Zfp536-201;Zfp536-203;Zfp536-206;Zfp536-209;Zfp536-208,Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,73,112,243937,ENSMUSG00000043456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6459,cg07840912,0.00000164,0.00000509,0.321700552,0.747896368,gain,ns,0.0000175,0.00000865,2.0202636,0.044215783,pos,ns,0.008333947,0.002535159,3.287347008,0.001127527,pos,ns,2.947873214,-0.000241667,0.0000872,-2.771917677,0.005909659,neg,ns,0.064842805,Zfp536,Zfp536_Intron,7,37346306,37346355,37346354,37346355,50,+,ACCATCTGTTTGACTAGAATTGTTGGCACATTTCAGCTAAGCCTCGCGCG,"Intron (Zfp536-211/Zfp536, intron 3 of 3)",7,37318024,37568390,250367,2,Zfp536-211,222035,Zfp536-211,Zfp536,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,73,112,243937,ENSMUSG00000043456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25771,cg07159253,0.0000977,0.00000655,14.91767872,2.63E-38,gain,yes,-0.0000225,0.0000111,-2.019925612,0.044251044,neg,ns,0.002706014,0.003259634,0.830158831,0.407087836,pos,ns,0.390311875,0.000135882,0.000112099,1.212168818,0.226370807,pos,ns,0.175047218,Uncx,Uncx_Promoter,5,139539266,139539315,139539266,139539267,50,+,CGGATTTCCCGGGGGAGTAGAGTAAATTAGTTCCATTTCCGAACTGCCTC,Promoter (4-5kb),5,139543494,139548179,4686,1,Uncx-201,-4179,Uncx-201;Uncx-202,Uncx;Uncx,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,22,88,22255,ENSMUSG00000029546,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
146,cg10882631,-0.0000121,0.00000612,-1.975424153,0.049106746,loss,ns,0.000021,0.0000104,2.019772744,0.044267001,pos,ns,0.000425781,0.003045503,0.13980629,0.888903831,pos,ns,0.051145222,-0.0000935,0.000104735,-0.892455131,0.372841264,neg,ns,0.868553436,Kdm2a,Kdm2a_Exon,19,4350170,4350219,4350218,4350219,50,-,TGCTTACCTGAGGGAATGACGAAGGTATAGCCCTGCTTGAGCTCAATGCG,"Exon (Kdm2a-201/Kdm2a, exon 9 of 21)",19,4314419,4398285,83867,2,Kdm2a-201,48066,Kdm2a-201;Kdm2a-202;Kdm2a-203;Kdm2a-205;Kdm2a-206;Kdm2a-204,Kdm2a;Kdm2a;Kdm2a;Kdm2a;Kdm2a;Kdm2a,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,21,30,225876,ENSMUSG00000054611,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
998,cg18476531,-0.0000655,0.0000178,-3.688505483,0.000266313,loss,ns,0.0000609,0.0000302,2.019732283,0.044271225,pos,ns,-0.008443004,0.008839096,-0.955188596,0.340226586,neg,ns,0.468231753,0.0000342,0.000303976,0.112652636,0.910378866,pos,ns,0.454512643,Rdh14,Rdh14_Intergenic_downstream,12,10438524,10438573,10438524,10438525,50,-,CGGCAGAGTTTCTGTGAGGATACACAATACCTTGTTACAAACCATGTAAT,Distal Intergenic,12,10390772,10395562,4791,1,Rdh14-201,47801,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,105014,ENSMUSG00000020621,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15536,cg04102018,0.0000084,0.00000963,0.872060794,0.38385012,gain,ns,0.000033,0.0000164,2.019703095,0.044274272,pos,ns,-0.000914467,0.004793218,-0.190783571,0.848820043,neg,ns,0.071184374,-0.0000461,0.000164838,-0.279848797,0.779780148,neg,ns,0.750531663,Gm50297,Gm50297_Intergenic_downstream,18,81651590,81651639,81651590,81651591,50,-,CGAGCTGCAGTCACTTAAGCTGAAAAGAAAACTGTTCACATCAACCTCTC,Distal Intergenic,18,82261062,82261262,201,2,Gm50297-201,609672,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,17,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26396,cg04407088,0.0000179,0.00000315,5.685153002,3.02E-08,gain,yes,-0.0000108,0.00000535,-2.019409372,0.044304949,neg,ns,0.001204025,0.001567739,0.768001016,0.44307119,pos,ns,0.353526489,-0.0000124,0.0000539,-0.230101815,0.818164418,neg,ns,0.088994025,Nkx2-2,Nkx2-2_Promoter,2,147195193,147195242,147195193,147195194,50,+,CGTGAGTCAAAATATTGGCCATATGTTCAGCGGTAATAAATTGGGTATGA,Promoter (<=1kb),2,147186305,147194243,7939,2,Nkx2-2-202,-950,Nkx2-2-202;Nkx2-2-204,Nkx2-2;Nkx2-2,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,3,30,18088,ENSMUSG00000027434,conserved gene and region,2,147194844,147195372,529,*,529,51,0.674858223,0.847064364,0.096408318,4.22E-38,CpGisland,TRUE,NA,NRS
1544,cg15278881,-0.0000186,0.0000108,-1.717123267,0.086955419,loss,ns,-0.0000371,0.0000184,-2.019353066,0.044310832,neg,ns,-0.004906902,0.005377528,-0.912482814,0.362223678,neg,ns,0.441023164,-0.0000839,0.000184933,-0.453620817,0.650419152,neg,ns,0.688391195,Gm49112,Gm49112_Intergenic_downstream,15,13583509,13583558,13583557,13583558,50,+,AGCCAATTAGGTAATGGCCTCCAGCAAGAGCGGACTCTATAGAAGACTCG,Distal Intergenic,15,13481349,13481637,289,1,Gm49112-201,102160,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5826,cg08022027,-0.00000195,0.00000283,-0.688160745,0.491866175,loss,ns,-0.00000971,0.00000481,-2.019245093,0.044322114,neg,ns,-0.000784782,0.001408813,-0.557051802,0.57789399,neg,ns,0.238151822,-0.0000292,0.0000484,-0.602735067,0.547125611,neg,ns,0.935826556,Prpf4b,Prpf4b_threeUTR,13,34903219,34903268,34903219,34903220,50,-,CGCCTTCTCCAAGGGGTCTGATTTGCTGAGACACCAGCTTCACCTTCTTA,3' UTR,13,34875302,34906064,30763,1,Prpf4b-201,27917,Prpf4b-201;Prpf4b-208;Prpf4b-202;Prpf4b-203;Prpf4b-210;Prpf4b-207;Prpf4b-204;Prpf4b-205;Prpf4b-209,Prpf4b;Prpf4b;Prpf4b;Prpf4b;Prpf4b;Prpf4b;Prpf4b;Prpf4b;Prpf4b,0;0;0;11095;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,4,19134,ENSMUSG00000021413,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27517,cg10591258,-0.0000155,0.0000111,-1.402018771,0.161910146,loss,ns,0.0000379,0.0000188,2.019221366,0.044324594,pos,ns,0.000456324,0.005505061,0.082891649,0.933991192,pos,ns,0.029657219,-0.000154898,0.000189319,-0.818185013,0.413880004,neg,ns,0.754076754,Pbx1,Pbx1_Intergenic_upstream,1,168908927,168908976,168908927,168908928,50,-,CGTTTGCATAATTAGATTGCTTTGAATTGCTGTCATTATTGGCTCTTTAG,Distal Intergenic,1,168119364,168432270,312907,2,Pbx1-208,-476706,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,17,84,18514,ENSMUSG00000052534,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20151,cg07851137,-0.00000651,0.00000474,-1.371982925,0.171060769,loss,ns,0.0000163,0.00000806,2.019140604,0.044333035,pos,ns,-0.0000119,0.002360442,-0.005028691,0.995990937,neg,ns,0.001744614,0.000132925,0.0000812,1.637502763,0.102540098,pos,ns,0.986184408,Calcoco1,Calcoco1_Intergenic_upstream,15,102737489,102737538,102737537,102737538,50,+,CTCCATCGCGAACATTTGGGCCGTGGCCAGCCGCATTAAAGGTTATTACG,Distal Intergenic,15,102706777,102722178,15402,2,Calcoco1-201,-15311,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,20,29,67488,ENSMUSG00000023055,mapped to different genes,15,102737359,102737627,269,*,269,21,0.565055762,0.991922739,0.078066915,4.85E-14,CpGisland,TRUE,U11,Tr-P
286,cg13055461,-0.000102095,0.00001,-10.16530791,3.87E-21,loss,yes,0.0000344,0.0000171,2.019035147,0.044344059,pos,ns,0.034453683,0.004998733,6.892483043,3.07E-11,pos,yes,10.51239388,-0.000516357,0.000171906,-3.003717218,0.002884351,neg,ns,0.678308603,Arid1b,Arid1b_Intron,17,5007430,5007479,5007430,5007431,50,+,CGTGACCTTCACATATGTAGATTAGCCATGTGCTCTGTGAATTGAAACTT,"Intron (Arid1b-204/Arid1b, intron 1 of 2)",17,4994332,5097733,103402,1,Arid1b-204,13098,Arid1b-204;Arid1b-201;Arid1b-207;Arid1b-202;Arid1b-203;Arid1b-206,Arid1b;Arid1b;Arid1b;Arid1b;Arid1b;Arid1b,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,11,239985,ENSMUSG00000069729,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
22693,cg08660235,-0.00000752,0.00000222,-3.388561722,0.000793365,loss,ns,0.00000761,0.00000377,2.01889701,0.044358503,pos,ns,0.0000211,0.001104218,0.019069675,0.984797791,pos,ns,0.006652934,-0.0000108,0.000038,-0.284391737,0.776300064,neg,ns,0.94248137,BC052040,BC052040_Intron,2,115725537,115725586,115725585,115725586,50,-,CTTTCCTTTTTCTAAACAGCAATTAATCTCATTTTAGTACAATTTTCTCG,"Intron (BC052040-203/BC052040, intron 10 of 10)",2,115581716,115778768,197053,1,BC052040-203,143821,BC052040-203;BC052040-201,BC052040;BC052040,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,37,49,399568,ENSMUSG00000040282,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20152,cg02182252,-0.0000136,0.0000117,-1.161921609,0.2461611,loss,ns,0.0000401,0.0000199,2.018789277,0.044369771,pos,ns,0.002358066,0.005817917,0.405311001,0.685528491,pos,ns,0.163974491,0.000259502,0.000200078,1.297006816,0.195593328,pos,ns,0.971714392,Calcoco1,Calcoco1_Intergenic_upstream,15,102737498,102737547,102737546,102737547,50,+,GAACATTTGGGCCGTGGCCAGCCGCATTAAAGGTTATTACGGAAAACGCG,Distal Intergenic,15,102706777,102722178,15402,2,Calcoco1-201,-15320,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,20,29,67488,ENSMUSG00000023055,mapped to different genes,15,102737359,102737627,269,*,269,21,0.565055762,0.991922739,0.078066915,4.85E-14,CpGisland,TRUE,U11,Tr-P
7830,cg19583769,-0.00000138,0.00000167,-0.822565392,0.411387445,loss,ns,0.00000574,0.00000284,2.018777973,0.044370953,pos,ns,0.001087944,0.000832406,1.306988068,0.192185425,pos,ns,0.716279552,-0.0000393,0.0000286,-1.371168983,0.17131405,neg,ns,0.95769144,Ldb2,Ldb2_Intron,5,44473743,44473792,44473743,44473744,50,+,CGCAGCCTGACACTGGAGAACGAGCAATGCTAGCAATCTGCAGAAATAAA,"Intron (Ldb2-207/Ldb2, intron 8 of 8)",5,44472132,44799619,327488,2,Ldb2-207,325827,Ldb2-207;Ldb2-201;Ldb2-204;Ldb2-205,Ldb2;Ldb2;Ldb2;Ldb2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,9,16826,ENSMUSG00000039706,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19571,cg03945566,0.0000374,0.00000706,5.305288952,0.000000215,gain,yes,0.0000242,0.000012,2.018245204,0.044426712,pos,ns,0.009562206,0.00351212,2.722630602,0.006843102,pos,ns,2.164746991,-0.000154491,0.000120782,-1.279095503,0.201820043,neg,ns,0.384748805,Sox14,Sox14_Exon,9,99874971,99875020,99874971,99874972,50,-,CGTAGCGTGGGCTGACGAATAAGGGTCTATGCCAGTCTTGGTCATGCCTG,"Exon (Sox14-201/Sox14, exon 1 of 1)",9,99874106,99876170,2065,2,Sox14-201,1150,Sox14-201;Sox14-202,Sox14;Sox14,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,18,20669,ENSMUSG00000053747,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
9844,cg12662152,-0.00000366,0.00000325,-1.126623762,0.260772936,loss,ns,-0.0000112,0.00000553,-2.018115123,0.044440336,neg,ns,-0.006790057,0.001618852,-4.194365768,0.0000358,neg,ns,4.446613743,0.000196532,0.0000557,3.530168908,0.000478281,pos,ns,0.841422527,Gm44402,Gm44402_Intergenic_downstream,6,51077397,51077446,51077445,51077446,50,-,AGCTGCCAATCTCCTGACAGAGACACCAAAGGGCCTCATGTAGCGCTGCG,Distal Intergenic,6,50967268,50967505,238,1,Gm44402-201,110178,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,9,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19155,cg12585939,-0.0000696,0.0000142,-4.892267984,0.00000161,loss,yes,-0.0000488,0.0000242,-2.01802244,0.044450044,neg,ns,-0.024982551,0.007085143,-3.526047336,0.000485492,neg,ns,3.313817487,0.000342756,0.000243657,1.406713803,0.160513968,pos,ns,0.564820382,Gm32308,Gm32308_Intron,6,98692126,98692175,98692126,98692127,50,+,CGTCTGTTCTGAGAGAGGAAAAACTGTTGACATTTCTTTGAAGTGTAATC,"Intron (Gm44196-202/Gm44196-202, intron 1 of 4)",6,98757749,98758028,280,1,Gm32308-201,-65574,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,10,102634810,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3332,cg15863913,-0.00000611,0.00000491,-1.244755486,0.214161834,loss,ns,0.0000168,0.00000834,2.017787011,0.044474714,pos,ns,0.00366879,0.002443696,1.501328266,0.134288529,pos,ns,0.871961084,-0.000146637,0.000084,-1.744879383,0.081996817,neg,ns,0.90329651,Gm11890,Gm11890_Intergenic_downstream,4,23628759,23628808,23628807,23628808,50,+,TTGATGTGCCTGCTGGCTTTTCAATAAAAATCAATTATGCCTTAAATGCG,Distal Intergenic,4,23659928,23660344,417,2,Gm11890-201,31536,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,32,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7825,cg16273547,-0.00000362,0.00000239,-1.513468265,0.131179585,loss,ns,0.00000821,0.00000407,2.017572343,0.044497218,pos,ns,0.00331053,0.001191603,2.778214653,0.005799103,pos,ns,2.236639155,-0.000116774,0.000041,-2.849607637,0.004670398,neg,ns,0.948343823,Gtdc1,Gtdc1_Intergenic_downstream,2,44465677,44465726,44465677,44465678,50,-,CGACATAAGCAATTCCAGTTTGACATCAATTAGTGAGTAGCTTTTACTCT,Distal Intergenic,2,44565133,44571347,6215,2,Gtdc1-207,105670,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,43,227835,ENSMUSG00000036890,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12652,cg02089194,-0.00000375,0.00000422,-0.888696022,0.374855521,loss,ns,0.0000145,0.00000716,2.017484026,0.044506479,pos,ns,0.005753761,0.002098365,2.74202112,0.006461042,pos,ns,2.189697432,-0.000211567,0.0000722,-2.931805456,0.003620764,neg,ns,0.882115533,Map2,Map2_Exon,1,66416415,66416464,66416415,66416416,50,+,CGGAGATCATCTCTTGAGAAACATAGAAAAGAAAAGCCTTTTAAAACCGG,"Exon (Map2-204/Map2, exon 8 of 15)",1,66175313,66442028,266716,1,Map2-206,241102,Map2-206;Map2-205;Map2-207;Map2-201;Map2-204;Map2-225;Map2-202;Map2-203;Map2-223;Map2-215;Map2-217;Map2-216;Map2-213;Map2-220;Map2-221;Map2-222,Map2;Map2;Map2;Map2;Map2;Map2;Map2;Map2;Map2;Map2;Map2;Map2;Map2;Map2;Map2;Map2,0;0;0;0;0;0;0;0;35903;35713;0;29437;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,3,17756,ENSMUSG00000015222,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22983,cg22663524,0.00000109,0.00000217,0.502919134,0.615378238,gain,ns,-0.00000744,0.00000369,-2.017421915,0.044512994,neg,ns,-0.000933852,0.001080506,-0.864273252,0.388106049,neg,ns,0.411049589,0.00000986,0.0000372,0.265478371,0.790817425,pos,ns,0.969401943,Dynlrb2,Dynlrb2_Intergenic_downstream,8,116568784,116568833,116568832,116568833,50,-,ACACATGAAAAATACAACTTCTAAGGCACCCAGAAATGTGTTCATACACG,Distal Intergenic,8,116505015,116515915,10901,1,Dynlrb2-201,63818,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,75465,ENSMUSG00000034467,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5546,cg08380206,-0.00000168,0.00000308,-0.545690416,0.585671204,loss,ns,0.0000106,0.00000524,2.017274618,0.044528446,pos,ns,0.002726275,0.001533923,1.777321491,0.07649575,pos,ns,1.11636269,-0.0000562,0.0000528,-1.066071709,0.287220802,neg,ns,0.94229457,Pbx3,Pbx3_Intron,2,34229638,34229687,34229638,34229639,50,-,CGCTTGACTCATTCTCTATTGAGGAAAAATGCAGCACTGGGAATTTACAA,"Intron (Pbx3-202/Pbx3, intron 2 of 7)",2,34171457,34372038,200582,2,Pbx3-202,142351,Pbx3-202;Pbx3-201;Pbx3-210;Pbx3-206;Pbx3-207;Pbx3-209;Pbx3-204;Pbx3-205;Pbx3-203,Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,82,18516,ENSMUSG00000038718,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10650,cg10120732,-0.00000418,0.00000188,-2.219106419,0.027203229,loss,ns,0.00000645,0.0000032,2.017272225,0.044528697,pos,ns,0.002986679,0.00093681,3.188137877,0.001578144,pos,ns,2.801853493,-0.0000552,0.0000322,-1.712562228,0.087793049,neg,ns,0.95139654,Cfl2,Cfl2_threeUTR,12,54858853,54858902,54858901,54858902,50,+,TGCAAGCTAGCAGTAAAATATTGCCTTCAATATTTTACTAATTAGCACCG,3' UTR,12,54858809,54862798,3990,2,Cfl2-206,3896,Cfl2-206;Cfl2-201;Cfl2-203;Cfl2-205;Cfl2-202;Cfl2-204,Cfl2;Cfl2;Cfl2;Cfl2;Cfl2;Cfl2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,3,12632,ENSMUSG00000062929,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1585,cg08174781,-0.0000144,0.00000555,-2.604976699,0.009631025,loss,ns,-0.000019,0.00000942,-2.017271021,0.044528823,neg,ns,-0.005141367,0.002760015,-1.862803901,0.06343556,neg,ns,1.19766722,-0.000038,0.0000949,-0.400552094,0.689025828,neg,ns,0.774550804,Zfp521,Zfp521_Intron,18,13798288,13798337,13798336,13798337,50,-,AAACCCCATAATGCAACACAAACAACAGGAAGTCTCCCAGAACCCCAACG,"Intron (Zfp521-201/Zfp521, intron 5 of 7)",18,13687013,13972787,285775,2,Zfp521-201,174450,Zfp521-201;Zfp521-205;Zfp521-204,Zfp521;Zfp521;Zfp521,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,81,225207,ENSMUSG00000024420,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23213,cg20779412,-0.000103531,0.0000196,-5.276642385,0.000000248,loss,yes,0.0000672,0.0000333,2.017134099,0.044543191,pos,ns,0.013417204,0.009765349,1.373960451,0.170446581,pos,ns,0.768411705,0.0000788,0.00033583,0.234500279,0.814751422,pos,ns,0.447747625,Rnf220,Rnf220_Intron,4,117492689,117492738,117492689,117492690,50,-,CGTGCAAATCCAGATTAAAATAACTCCAGCTATTGATCCGAGCAGTGGAA,"Intron (Rnf220-201/Rnf220, intron 1 of 14)",4,117271463,117497052,225590,2,Rnf220-201,4314,Rnf220-201;Rnf220-207;Rnf220-204,Rnf220;Rnf220;Rnf220,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
12205,cg20530055,-0.00000176,0.000000957,-1.839091816,0.066857955,loss,ns,0.00000328,0.00000163,2.017002295,0.044557025,pos,ns,0.00102558,0.000476503,2.152305956,0.032144966,pos,ns,1.492887028,-0.0000244,0.0000164,-1.491736584,0.136785117,neg,ns,0.971999878,Fbxl17,Fbxl17_Exon,17,63356802,63356851,63356850,63356851,50,-,CTCTTGACAATTTCCATCACGGTTTCATTATCCAGTTCAGTGATATGACG,"Exon (Fbxl17-201/Fbxl17, exon 6 of 9)",17,63057452,63500017,442566,2,Fbxl17-201,143166,Fbxl17-201;Fbxl17-203;Fbxl17-204;Fbxl17-205,Fbxl17;Fbxl17;Fbxl17;Fbxl17,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,8,50758,ENSMUSG00000023965,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9839,cg04570692,-0.00000126,0.00000576,-0.219041041,0.826762222,loss,ns,0.0000197,0.00000978,2.016981443,0.044559214,pos,ns,0.005747854,0.002866608,2.005106067,0.045820755,pos,ns,1.338937756,-0.000184876,0.0000986,-1.875343535,0.061685308,neg,ns,0.896701489,Tbc1d5,Tbc1d5_Intron,17,51062953,51063002,51062953,51062954,50,+,CGATCCTTGAATACATTAATACAGATATGTGAAGCGACTTCCTGATGGGA,"Intron (Tbc1d5-201/Tbc1d5, intron 2 of 21)",17,50733124,51179168,446045,2,Tbc1d5-201,116166,Tbc1d5-201;Tbc1d5-207;Tbc1d5-205;Tbc1d5-208;Tbc1d5-203;Tbc1d5-202;Tbc1d5-206;Tbc1d5-209,Tbc1d5;Tbc1d5;Tbc1d5;Tbc1d5;Tbc1d5;Tbc1d5;Tbc1d5;Tbc1d5,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,14,72238,ENSMUSG00000023923,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9993,cg09096400,-0.0000155,0.00000647,-2.399735815,0.016996694,loss,ns,0.0000222,0.000011,2.016921142,0.044565545,pos,ns,0.001705593,0.003222418,0.529289853,0.596983199,pos,ns,0.224037891,-0.0000738,0.000110819,-0.666233476,0.505757364,neg,ns,0.851824653,Hectd1,Hectd1_Exon,12,51798710,51798759,51798758,51798759,50,+,AATGGAGTTTTCCCATCTTCATCTCTCAGATCTGGATTTGCACCATGCCG,"Exon (Hectd1-201/Hectd1, exon 9 of 43)",12,51743722,51829536,85815,2,Hectd1-201,30777,Hectd1-201;Hectd1-202,Hectd1;Hectd1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,19,19,207304,ENSMUSG00000035247,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23176,cg14963491,0.0000127,0.00000775,1.644631803,0.101059388,gain,ns,-0.0000265,0.0000132,-2.016039771,0.044658163,neg,ns,-0.005044057,0.003855665,-1.308219954,0.191767881,neg,ns,0.71722413,0.0000748,0.000132596,0.564020672,0.573147874,pos,ns,0.889850503,Rnf220,Rnf220_Intron,4,117380314,117380363,117380362,117380363,50,+,CTTTTCGAGGGGCAGACCATGTGTTTTCTTAAGTAGCACTTACTGATGCG,"Intron (Rnf220-201/Rnf220, intron 2 of 14)",4,117271463,117497052,225590,2,Rnf220-201,116689,Rnf220-201;Rnf220-202;Rnf220-207,Rnf220;Rnf220;Rnf220,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20875,cg03496300,0.00000642,0.00000769,0.835180033,0.404259546,gain,ns,0.0000263,0.0000131,2.015830276,0.044680201,pos,ns,0.000855031,0.003828372,0.22334069,0.823417461,pos,ns,0.084379928,0.0000647,0.000131657,0.491441449,0.623462016,pos,ns,0.110877994,Pax6,Pax6_fiveUTR,2,105675604,105675653,105675604,105675605,50,+,CGGCACACACACATTAACACACTTGAGCCATCACCAATCAGCATAGGTGT,5' UTR,2,105668900,105697364,28465,1,Pax6-206,6704,Pax6-206;Pax6-207;Pax6-210;Pax6-214;Pax6-208;Pax6-217;Pax6-226;Pax6-220;Pax6-202;Pax6-205;Pax6-225;Pax6-204;Pax6-201;Pax6-203;Pax6-224;Pax6-219,Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,15,78,18508,ENSMUSG00000027168,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
21751,cg08512490,0.00000518,0.00000554,0.935988452,0.350007697,gain,ns,-0.000019,0.0000094,-2.015633642,0.044700896,neg,ns,-0.004687555,0.00275504,-1.701447478,0.089861663,neg,ns,1.046425546,-0.0000779,0.0000947,-0.821882582,0.411775393,neg,ns,0.956178671,Zfhx3,Zfhx3_Exon,8,108956666,108956715,108956666,108956667,50,+,CGAGAGCAGCAAGAAACGCCAAAGAGCACCCTAGTTTATTACCTCACTCT,"Exon (Zfhx3-204/Zfhx3, exon 16 of 16)",8,107942644,108961630,1018987,1,Zfhx3-204,1014022,Zfhx3-204;Zfhx3-201,Zfhx3;Zfhx3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,46,177,11906,ENSMUSG00000038872,conserved gene and region,8,108956520,108956683,164,*,164,19,0.670731707,1.073002755,0.115853659,4.34E-16,CpGisland,TRUE,NA,NRS
4901,cg17975801,-0.00000151,0.00000836,-0.180407174,0.856950801,loss,ns,0.0000286,0.0000142,2.015550709,0.044709626,pos,ns,0.001121223,0.004159575,0.269552416,0.787683945,pos,ns,0.103648007,-0.000104077,0.000143047,-0.727571063,0.467425336,neg,ns,0.855596987,Zfp513,Zfp513_Exon,5,31200514,31200563,31200562,31200563,50,-,CGCTGTGTGTCTGCATGTGCCGCTTCAGGTGGCTCGAGTAGTGGGACACG,"Exon (Zfp513-202/Zfp513, exon 3 of 4)",5,31198981,31202303,3323,2,Zfp513-202,1740,Ppm1g-205;Ppm1g-201;Ppm1g-206;Ppm1g-203;Ppm1g-204;Snx17-201;Snx17-202;Snx17-204;Snx17-210;Snx17-208;Snx17-207;Snx17-211;Snx17-209;Snx17-206;Snx17-203;Zfp513-202;Zfp513-201;Zfp513-205;Zfp513-207;Zfp513-203;Zfp513-204;Zfp513-208;Zfp513-206,Ppm1g;Ppm1g;Ppm1g;Ppm1g;Ppm1g;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Zfp513;Zfp513;Zfp513;Zfp513;Zfp513;Zfp513;Zfp513;Zfp513,0;0;4520;0;0;0;0;0;0;0;0;5671;0;0;0;0;0;0;-228;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,15,15,101023,ENSMUSG00000043059,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13632,cg16777453,0.000163796,0.0000104,15.79414397,1.22E-41,gain,yes,-0.0000355,0.0000176,-2.015377174,0.044727899,neg,ns,0.015906492,0.005161597,3.081699637,0.002242948,pos,ns,2.649180884,0.000266194,0.000177507,1.499627923,0.134728505,pos,ns,0.339385771,Dlx2,Dlx2_Intergenic_downstream,2,71541589,71541638,71541589,71541590,50,-,CGTAGGCCTCTTAATCATCTTGTCTGCTGCAGATCCTCGACACCAGCCAA,Distal Intergenic,2,71544866,71545950,1085,2,Dlx2-202,4361,Dlx2-201;Dlx2-202,Dlx2;Dlx2,0;4312,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,8,13392,ENSMUSG00000023391,conserved gene and region,2,71541396,71541692,297,*,297,28,0.676767677,0.825819265,0.094276094,7.16E-21,CpGisland,TRUE,NA,NRS
7287,cg23116266,-0.00000454,0.00000176,-2.571697988,0.010585897,loss,ns,0.00000604,0.000003,2.015345012,0.044731286,pos,ns,0.001826677,0.000878071,2.080328713,0.038316462,pos,ns,1.416614597,-0.0000371,0.0000302,-1.228476716,0.220199875,neg,ns,0.050576454,Hivep1,Hivep1_Promoter,13,42052889,42052938,42052937,42052938,50,+,CGAAGCGCTTTGTTCAGTGCAGCGTTGCAGAGGGGTTTTCCCAGGCTCCG,Promoter (<=1kb),13,42052021,42185026,133006,1,Hivep1-201,868,Hivep1-201;Hivep1-202,Hivep1;Hivep1,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,4,6,110521,ENSMUSG00000021366,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
16666,cg04145791,-0.0000133,0.00000782,-1.706435242,0.088928543,loss,ns,0.0000268,0.0000133,2.015106046,0.044756461,pos,ns,0.00616647,0.003891241,1.584705305,0.114052859,pos,ns,0.942893824,0.000396057,0.000133819,2.959637151,0.003317458,pos,ns,0.136150636,Tbx4,Tbx4_Intron,11,85893942,85893991,85893990,85893991,50,+,CTCCTGTTGAACCTGTATTGTTTGTTATTCTGAGGCAAGGATTTGGCCCG,"Intron (Tbx4-203/Tbx4, intron 3 of 8)",11,85886422,85916095,29674,1,Tbx4-203,7520,Tbx4-203;Tbx4-201;Tbx4-202,Tbx4;Tbx4;Tbx4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,9,21387,ENSMUSG00000000094,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
6485,cg21278917,-0.0000104,0.00000918,-1.128755427,0.259873766,loss,ns,0.0000314,0.0000156,2.01504569,0.044762821,pos,ns,0.001597529,0.004571191,0.349477685,0.726968005,pos,ns,0.138484703,-0.000137942,0.000157203,-0.877479277,0.380905896,neg,ns,0.484627128,Stk32b,Stk32b_Exon,5,37461383,37461432,37461383,37461384,50,-,CGTGGAGGAGTAGTGGACACGCTCCACCTTGAACATGTTGAGGATTTCAT,"Exon (Stk32b-201/Stk32b, exon 8 of 12)",5,37446825,37717171,270347,2,Stk32b-201,255739,Stk32b-201,Stk32b,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,64293,ENSMUSG00000029123,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19779,cg26205369,-0.0000141,0.00000546,-2.57229145,0.010568153,loss,ns,-0.0000187,0.00000928,-2.014850515,0.044783394,neg,ns,0.009601515,0.002719617,3.530465191,0.000477767,pos,ns,3.32078413,-0.00038078,0.0000935,-4.071323357,0.0000594,neg,ns,0.858020696,Ppp4r3a,Ppp4r3a_Exon,12,101058721,101058770,101058769,101058770,50,+,AGCTTTTTAATATAACCCTCATTTTCTAGTGCCAGTGCAAGTTTTTCACG,"Exon (Ppp4r3a-201/Ppp4r3a, exon 4 of 15)",12,101039409,101083663,44255,2,Ppp4r3a-201,24893,Ppp4r3a-201;Ppp4r3a-202;Ppp4r3a-207,Ppp4r3a;Ppp4r3a;Ppp4r3a,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,10,68734,ENSMUSG00000041846,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23250,cg19047543,0.000123183,0.0000129,9.539274528,4.44E-19,gain,yes,-0.0000442,0.0000219,-2.014656896,0.04480381,neg,ns,-0.000408284,0.006427053,-0.063525835,0.949388729,neg,ns,0.022555928,-0.001137289,0.000221026,-5.145504878,0.000000474,neg,yes,0.820461399,Eri3,Eri3_Intron,4,117605898,117605947,117605946,117605947,50,+,CCCTCCCCTCTCATACAATATTTATCCAGGGATGGGAGTCAGATGCAGCG,"Intron (Eri3-201/Eri3, intron 6 of 8)",4,117550365,117674297,123933,1,Eri3-201,55533,Eri3-201;Eri3-206;Eri3-202;Eri3-204,Eri3;Eri3;Eri3;Eri3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,82,97,140546,ENSMUSG00000033423,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
603,cg21667796,-0.0000282,0.0000039,-7.219802976,4.04E-12,loss,yes,0.0000133,0.00000663,2.01443055,0.044827688,pos,ns,0.009364497,0.001941018,4.824528747,0.0000022,pos,ns,5.656616894,-0.00029864,0.0000668,-4.473917072,0.0000108,neg,ns,0.076418591,Macrod1,Macrod1_Intron,19,7165177,7165226,7165225,7165226,50,+,TTGGAGGCTGCTCATGCCCCCCTTGAAGTCGTTTTAAAAATAAAACCTCG,"Intron (Macrod1-201/Macrod1, intron 3 of 10)",19,7056810,7198057,141248,1,Macrod1-201,108367,Macrod1-201,Macrod1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,11,107227,ENSMUSG00000036278,conserved gene and region,19,7165206,7166284,1079,*,1079,149,0.772937906,0.927382326,0.138090825,2.45E-136,CpGisland,TRUE,U3,Pr-B
26083,cg07309253,0.00000333,0.00000833,0.399509652,0.689792818,gain,ns,-0.0000285,0.0000142,-2.014349527,0.044836238,neg,ns,0.032433226,0.004145578,7.823570975,8.14E-14,pos,yes,13.08914421,-0.001624357,0.000142566,-11.39371293,2.35E-25,neg,yes,0.88059503,Sox5,Sox5_Intergenic_downstream,6,143748863,143748912,143748863,143748864,50,+,CGTGGTTGTCAATTTGAATTGTGTATCAACTACCCATCATATTTGGCACA,Distal Intergenic,6,143861441,143947088,85648,2,Sox5-206,198176,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,71,20678,ENSMUSG00000041540,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1291,cg25046864,0.0000437,0.0000143,3.063739586,0.002377786,gain,ns,0.0000488,0.0000242,2.01407406,0.044865316,pos,ns,0.028111011,0.007101508,3.958456553,0.0000936,pos,ns,4.028743707,-0.000895421,0.00024422,-3.666448988,0.000289303,neg,ns,0.358114048,Gm14521,Gm14521_Intergenic_upstream,X,12286727,12286776,12286727,12286728,50,+,CGTTCCTGAGGAGGCCTCATTTCCTCGCCACACACCCCTGATGTGGTCAG,Distal Intergenic,20,12179718,12180067,350,2,Gm14521-201,-106660,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22482,cg12158204,-0.000000286,0.000000701,-0.408770796,0.682990114,loss,ns,0.0000024,0.00000119,2.013819499,0.044892202,pos,ns,0.000662941,0.000348667,1.901359276,0.058182034,pos,ns,1.235211099,-0.000015,0.000012,-1.252595669,0.211296985,neg,ns,0.977712878,Gm13975,Gm13975_Intergenic_downstream,2,114816953,114817002,114817001,114817002,50,+,ATACACCATTAATAGCCTTAGAATTGCTAATTATTTCAACATGAATAGCG,Distal Intergenic,2,114708112,114708893,782,1,Gm13975-201,108841,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,9,100043219,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20667,cg01670345,-0.000000903,0.00000176,-0.51246045,0.608693719,loss,ns,0.00000603,0.00000299,2.013241578,0.044953291,pos,ns,0.001595185,0.000876968,1.818977646,0.069879523,pos,ns,1.155650068,-0.000061,0.0000302,-2.02203103,0.044031778,neg,ns,0.966761365,Adamts6,Adamts6_threeUTR,13,104413726,104413775,104413774,104413775,50,-,CGAGATTTTCGAGAGAAACAGTGTGCAGACTTTGACAATATGCCTTTCCG,3' UTR,13,104287835,104496695,208861,1,Adamts6-207,125891,Adamts6-207;Adamts6-202;Adamts6-201;Adamts6-206;Adamts6-203;Adamts6-204,Adamts6;Adamts6;Adamts6;Adamts6;Adamts6;Adamts6,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,19,31,108154,ENSMUSG00000046169,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2995,cg12997561,-0.0000159,0.00000688,-2.306661325,0.021732794,loss,ns,-0.0000235,0.0000117,-2.013212526,0.044956364,neg,ns,-0.013565718,0.003426295,-3.959296469,0.0000933,neg,ns,4.030196897,0.000306859,0.00011783,2.604255,0.009650886,pos,ns,0.793723061,Gm11882,Gm11882_Promoter,4,22269198,22269247,22269198,22269199,50,-,CGTGTTATCAATTGGGAGGCAGCAGTGCATTCCCTCTATGTGGAACAGTG,Promoter (6-7kb),4,22275833,22276338,506,1,Gm11882-201,-6635,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,4,100504111,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10517,cg00512700,-0.000000494,0.00000761,-0.064884642,0.94830767,loss,ns,0.000026,0.0000129,2.013050066,0.04497355,pos,ns,-0.002113374,0.003785694,-0.558252771,0.577074752,neg,ns,0.238767926,-0.0000451,0.00013019,-0.346792885,0.728982211,neg,ns,0.819679654,Npas3,Npas3_Intron,12,53952301,53952350,53952301,53952302,50,+,CGCTGGCCAAGGTGTTGAGGGAGCTGTTAATAATGTCACTCCAGTTATTG,"Intron (Npas3-204/Npas3, intron 5 of 10)",12,53248157,54069532,821376,1,Npas3-204,704144,Npas3-204;Npas3-201;Npas3-203,Npas3;Npas3;Npas3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,83,103,27386,ENSMUSG00000021010,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14963,cg16278770,0.0000206,0.00000903,2.283643431,0.023068696,gain,ns,0.0000309,0.0000153,2.01299033,0.044979871,pos,ns,0.012853615,0.004494902,2.859598617,0.004529485,pos,ns,2.343951169,-0.000146073,0.000154579,-0.944971099,0.345409563,neg,ns,0.260286504,Nr2f1,Nr2f1_Promoter,13,78209038,78209087,78209086,78209087,50,+,CCAATTAGCTGCTGGTTGGAGTTTAGTTGGAGGAACTGTCAGCTCCAACG,Promoter (9-10kb),13,78188973,78199757,10785,2,Nr2f1-201,-9281,NA,NA,NA,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,6,55,13865,ENSMUSG00000069171,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
12943,cg10088405,0.000128261,0.0000149,8.594615149,4.18E-16,gain,yes,-0.000051,0.0000254,-2.012723171,0.045008149,neg,ns,0.015914697,0.007427547,2.142658618,0.032918998,pos,ns,1.482553395,-0.000501649,0.000255433,-1.963916915,0.050433072,neg,ns,0.311666574,Iqschfp,Iqschfp_fiveUTR,3,68572480,68572529,68572480,68572481,50,-,CGCAGGTTGATCAGCGAAACAGCATCCATTTTAATCTGCGGGGAGCCCCT,5' UTR,3,67892232,68626466,734235,1,Iqschfp-201,680248,Iqschfp-201;Schip1-201;Schip1-202;Schip1-205;Schip1-208;Schip1-206;Schip1-203,Iqschfp;Schip1;Schip1;Schip1;Schip1;Schip1;Schip1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,3,100505386,ENSMUSG00000102422,conserved gene and region,3,68572337,68572616,280,*,280,21,0.675,0.661566157,0.075,1.10E-13,CpGisland,TRUE,U9,En-Pp
11213,cg23574174,1.93E-08,0.0000051,0.003780423,0.996986098,gain,ns,-0.0000174,0.00000866,-2.012628178,0.045018207,neg,ns,-0.00349312,0.002537492,-1.37660293,0.169628462,neg,ns,0.770501274,0.0000719,0.0000873,0.824077052,0.41052935,pos,ns,0.919052145,Ablim1,Ablim1_Exon,19,57051213,57051262,57051213,57051214,50,-,CGGCCGCTGGACGGCTCATTGCCTCCAATGAGAAGAATGGAAAAAACAAA,"Exon (Ablim1-201/Ablim1, exon 16 of 26)",19,57032733,57216032,183300,2,Ablim1-201,164770,Ablim1-201;Ablim1-207;Ablim1-203;Ablim1-202;Ablim1-213;Ablim1-206;Ablim1-205;Ablim1-210;Ablim1-212;Ablim1-211;Ablim1-209;Ablim1-208;Ablim1-221;Ablim1-219,Ablim1;Ablim1;Ablim1;Ablim1;Ablim1;Ablim1;Ablim1;Ablim1;Ablim1;Ablim1;Ablim1;Ablim1;Ablim1;Ablim1,0;0;0;0;0;0;0;0;0;0;0;0;0;-3975,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,4,226251,ENSMUSG00000025085,conserved gene and region,19,57051160,57051225,66,*,66,7,0.681818182,1.166666667,0.106060606,0.00000889,CpGisland,TRUE,U11,Tr-P
8050,cg03242400,0.0000332,0.000007,4.743092288,0.00000322,gain,ns,-0.0000239,0.0000119,-2.011150883,0.045174876,neg,ns,0.002900508,0.003484333,0.83244293,0.405799805,pos,ns,0.391688166,-0.000177043,0.000119826,-1.477498133,0.140557364,neg,ns,0.012179343,Pax5,Pax5_Exon,4,44703344,44703393,44703392,44703393,50,+,AGAGAAGCGAGCTCGCCGCCTACTTACTATGCATGGATGCAAACGGGTCG,"Exon (Pax5-208/Pax5, exon 1 of 5)",4,44524757,44710487,185731,2,Pax5-201,7094,Pax5-201;Pax5-202;Pax5-203;Pax5-204;Pax5-205;Pax5-207;Pax5-206;Pax5-209;Pax5-210;Pax5-212;Pax5-213;Pax5-214;Pax5-215;Pax5-208;Pax5-216;Pax5-217;Pax5-218;Pax5-219,Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,45,18507,ENSMUSG00000014030,conserved gene and region,4,44703085,44703505,421,*,421,37,0.617577197,0.926154944,0.087885986,3.03E-26,CpGisland,TRUE,U3,Pr-B
8858,cg09495541,0.00000163,0.00000664,0.245537569,0.806202697,gain,ns,-0.0000227,0.0000113,-2.011120825,0.045178069,neg,ns,0.007532969,0.003306166,2.278460386,0.023379209,pos,ns,1.631170193,-0.000250602,0.000113699,-2.204084075,0.028253097,neg,ns,0.624922,Gm13466,Gm13466_Intergenic_downstream,2,46069072,46069121,46069072,46069073,50,+,CGTTTATTGTAGTGTGATGAAACACCTTTCAAAATGGCCAGAGGGACATT,Distal Intergenic,2,45809472,45810470,999,1,Gm13466-201,259600,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,9,666604,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1723,cg06290983,0.0000961,0.0000139,6.918347299,2.62E-11,gain,yes,-0.0000474,0.0000236,-2.010304131,0.045264883,neg,ns,0.008885893,0.00691341,1.285312596,0.199642473,pos,ns,0.699747059,-0.000230342,0.000237752,-0.968834586,0.333382992,neg,ns,0.174534431,Gm5513,Gm5513_Intergenic_downstream,19,14803070,14803119,14803070,14803071,50,-,CGGCTTCATCAAACATTCATTGTTCAATACTGTGACAGCTGGTAGCAGGC,Distal Intergenic,19,14959549,14960766,1218,2,Gm5513-201,157696,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,22,433225,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17643,cg07099291,0.0000767,0.0000093,8.256078112,4.39E-15,gain,yes,-0.0000317,0.0000158,-2.010126057,0.045283831,neg,ns,-0.00332764,0.00462626,-0.719293747,0.472501824,neg,ns,0.325596511,0.000213751,0.000159097,1.343527449,0.180083862,pos,ns,0.198533486,Zic1,Zic1_threeUTR,9,91360913,91360962,91360913,91360914,50,-,CGTGGAGACTGTAATCGTACAAAGTAATTCACATTTTGGTACACATTTAC,3' UTR,9,91358058,91365768,7711,2,Zic1-201,4806,Zic1-201;Zic1-202;Zic1-203;Zic4-208,Zic1;Zic1;Zic1;Zic4,0;0;2092;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,10,22771,ENSMUSG00000032368,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
83,cg06878766,0.000252921,0.0000105,24.03212052,8.71E-73,gain,yes,-0.0000359,0.0000179,-2.010031991,0.045293843,neg,ns,-0.012035209,0.005238038,-2.297655949,0.022247166,neg,ns,1.652725301,0.000346554,0.000180136,1.923848256,0.055289022,pos,ns,0.166063631,Plag1,Plag1_Promoter,4,3937770,3937819,3937818,3937819,50,+,TGAATTTATATTAATTTTTCCCTTATTTTTCGGGTCTCTAATGTCTTCCG,Promoter (<=1kb),4,3900996,3938382,37387,2,Plag1-201,563,Chchd7-202;Chchd7-206;Chchd7-213;Chchd7-207;Chchd7-208;Chchd7-201;Chchd7-205;Chchd7-214;Chchd7-203;Chchd7-209;Chchd7-210;Chchd7-211;Chchd7-204;Plag1-201;Plag1-202;Plag1-204;Plag1-203,Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Plag1;Plag1;Plag1;Plag1,-1069;-1069;-1071;-1095;-1095;-1095;-1095;-1095;-1101;-1224;-1603;-1681;-3035;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,8,22,56711,ENSMUSG00000003282,conserved gene and region,4,3937683,3937840,158,*,158,13,0.537974684,1.156531532,0.082278481,3.81E-09,CpGisland,TRUE,U1,Pr-A
2516,cg15352113,-0.0000312,0.00000961,-3.244794055,0.001303756,loss,ns,0.0000328,0.0000163,2.009696838,0.04532953,pos,ns,-0.006845587,0.004782055,-1.431515528,0.153289908,neg,ns,0.814486437,0.000334087,0.000164454,2.03148533,0.043058499,pos,ns,0.894968763,Pkhd1,Pkhd1_Intron,1,20180379,20180428,20180379,20180380,50,-,CGTTTCATTTCACAGGTCATTATTGCATTAAGAAGTAAATCGACCAAGTC,"Intron (Pkhd1-201/Pkhd1, intron 60 of 66)",1,20057779,20618064,560286,2,Pkhd1-201,437636,Pkhd1-201,Pkhd1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,25,241035,ENSMUSG00000043760,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12883,cg26401968,-0.00000303,0.00000491,-0.617515621,0.537348011,loss,ns,0.0000168,0.00000834,2.009652435,0.04533426,pos,ns,-0.000816845,0.002444462,-0.334161505,0.738483639,neg,ns,0.131659122,-0.0000874,0.0000841,-1.039470754,0.299395902,neg,ns,0.939561745,Gm11249,Gm11249_Intergenic_upstream,4,67755593,67755642,67755593,67755594,50,+,CGGGTGGCATTGATCTGTTTTATTCATAGCCATAGACAGAAATGCATCAT,Distal Intergenic,4,67930881,67931739,859,1,Gm11249-201,-175239,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,433715,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10121,cg15156295,-0.00000294,0.00000271,-1.086564651,0.278073401,loss,ns,0.00000925,0.0000046,2.009266323,0.045375406,pos,ns,0.001761566,0.001348746,1.30607713,0.192494616,pos,ns,0.715581414,-0.000126196,0.0000464,-2.720718731,0.006881856,neg,ns,0.924927045,Gm19197,Gm19197_Intergenic_downstream,17,52195977,52196026,52196025,52196026,50,-,GTGACTAAGCAAGCAGCTGGTGTGTGGCTGGACAGCTTGAATTCTCTGCG,Distal Intergenic,17,52008967,52009569,603,1,Gm19197-201,187059,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,11,100418416,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
521,cg18623536,-0.000000289,0.00000571,-0.050655892,0.959632348,loss,ns,-0.0000195,0.0000097,-2.009196703,0.045382828,neg,ns,-0.010926623,0.002843024,-3.843310449,0.000147273,neg,ns,3.831876685,0.0000354,0.0000978,0.361593508,0.717902148,pos,ns,0.87131328,St18,St18_Intron,1,6757691,6757740,6757691,6757692,50,+,CGGATCAGAGTGTAATTGTCAGTAATCAGGCCTGCTTGCTGCTGATAAAA,"Intron (St18-208/St18, intron 4 of 23)",1,6487231,6860934,373704,1,St18-208,270460,St18-208;St18-204;St18-201;St18-206;St18-203;St18-210;St18-212;St18-207;St18-213,St18;St18;St18;St18;St18;St18;St18;St18;St18,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,20,240690,ENSMUSG00000033740,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5738,cg00414520,0.0000859,0.00000591,14.54363735,6.83E-37,gain,yes,-0.0000202,0.00001,-2.009046758,0.045398818,neg,ns,0.004922053,0.002940937,1.673634198,0.09521118,pos,ns,1.021312051,-0.0000384,0.000101139,-0.379482946,0.704589085,neg,ns,0.086155149,Sox2,Sox2_Promoter,3,34648617,34648666,34648617,34648618,50,-,CGTGTAGCGACAACAAGAGAAACAAAACTACCTATTTGTAACGGACGTGC,Promoter (1-2kb),3,34650405,34652461,2057,1,Sox2-201,-1788,Sox2-201,Sox2,0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,7,62,20674,ENSMUSG00000074637,mapped to different genes,3,34648599,34648789,191,*,191,11,0.523560209,0.841746795,0.057591623,0.000003,CpGisland,TRUE,U13,Hc-P
22051,cg06310715,-0.00000429,0.00000119,-3.591839294,0.000381688,loss,ns,0.00000408,0.00000203,2.008739664,0.045431581,pos,ns,0.001828847,0.000594752,3.074975382,0.002292584,pos,ns,2.639674679,-0.000019,0.0000205,-0.928301146,0.3539736,neg,ns,0.046186623,Map2k6,Map2k6_fiveUTR,11,110399090,110399139,110399090,110399091,50,-,CGCAGGAAGGACGTCTGCGCACTAAGATACTCAGTTCCAAGTTTGGAGCT,Promoter (<=1kb),11,110399122,110513641,114520,1,Map2k6-201,0,Map2k6-201;Map2k6-202;Map2k6-204,Map2k6;Map2k6;Map2k6,0;0;-120,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,5,26399,ENSMUSG00000020623,conserved gene but different region,11,110398916,110399108,193,*,193,14,0.533678757,1.03051106,0.07253886,4.33E-09,CpGisland,TRUE,U2,Pr-W
18027,cg03640209,-0.0000281,0.0000109,-2.578155569,0.010394247,loss,ns,0.0000372,0.0000185,2.00818516,0.045490789,pos,ns,-0.0000465,0.005433496,-0.008549601,0.993183988,neg,ns,0.002970291,-0.00014124,0.000186857,-0.755872035,0.450299893,neg,ns,0.817015245,Pola1,Pola1_Intron,X,93317685,93317734,93317733,93317734,50,-,TTTCCATTGTGCTGCTGAACTGGCATAATGCCCACTTTAAAAGCAATTCG,"Intron (Pola1-201/Pola1, intron 36 of 36)",20,93304767,93632155,327389,2,Pola1-201,314421,Pola1-201,Pola1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,59,62,18968,ENSMUSG00000006678,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3541,cg11966467,0.00000901,0.0000072,1.251742293,0.211607456,gain,ns,0.0000246,0.0000122,2.008157978,0.045493693,pos,ns,0.011887079,0.003582989,3.317643426,0.001015834,pos,ns,2.993177448,-0.000360349,0.000123219,-2.924469383,0.003704826,neg,ns,0.867111269,Gm12067,Gm12067_Intron,11,24452345,24452394,24452393,24452394,50,-,ATGCTGGGTAATTAGCAAAATGTGCACAGGGTTTTATCCATATTCATGCG,"Intron (Gm12068-201/Gm12068-201, intron 2 of 3)",11,24552438,24553962,1525,2,Gm12067-201,101617,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,58,100417843,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9817,cg19019445,-0.000000993,0.00000125,-0.796456728,0.426376131,loss,ns,0.00000425,0.00000212,2.007523175,0.045561559,pos,ns,0.001706414,0.000620485,2.750129634,0.006307075,pos,ns,2.200171978,-0.0000556,0.0000213,-2.605421445,0.009618804,neg,ns,0.964640525,Tbc1d5,Tbc1d5_Intron,17,50933577,50933626,50933625,50933626,50,-,AACAGTCTCATTAATTCAATAAAATCCCATAACTATTAACAATATGGTCG,"Intron (Tbc1d5-201/Tbc1d5, intron 9 of 21)",17,50733124,51179168,446045,2,Tbc1d5-201,245542,Tbc1d5-201;Tbc1d5-207;Tbc1d5-205;Tbc1d5-208;Tbc1d5-203;Tbc1d5-202;Tbc1d5-206,Tbc1d5;Tbc1d5;Tbc1d5;Tbc1d5;Tbc1d5;Tbc1d5;Tbc1d5,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,14,72238,ENSMUSG00000023923,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19923,cg03286410,-0.000000295,0.00000217,-0.135667096,0.892172513,loss,ns,0.00000741,0.00000369,2.007447017,0.045569707,pos,ns,0.002412905,0.001081138,2.231820082,0.026341306,pos,ns,1.579362702,-0.0000545,0.0000372,-1.465226917,0.143872487,neg,ns,0.952483142,Ogt,Ogt_Exon,X,101654386,101654435,101654434,101654435,50,+,TCTGCTCTTCTGATGATGCGCTGTGACCCTGCAGTAGCGCAAAGGCTGCG,"Exon (Ogt-204/Ogt, exon 4 of 4)",20,101640060,101682940,42881,1,Ogt-202,14326,Ogt-202;Ogt-206;Ogt-201;Ogt-205;Ogt-204;Ogt-207;Ogt-203,Ogt;Ogt;Ogt;Ogt;Ogt;Ogt;Ogt,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,32,33,108155,ENSMUSG00000034160,conserved gene and region,X,101654404,101654477,74,*,74,8,0.608108108,1.174603175,0.108108108,0.0000012,CpGisland,TRUE,U10,Tr-S
11761,cg23432399,-0.0000186,0.000009,-2.063595935,0.039888144,loss,ns,0.0000307,0.0000153,2.007360678,0.045578945,pos,ns,0.01555057,0.004479601,3.471418509,0.000591218,pos,ns,3.228252158,-0.000424927,0.000154053,-2.758313574,0.006155049,neg,ns,0.483665387,Cdh23,Cdh23_Intron,10,60527947,60527996,60527947,60527948,50,+,CGAGTGAGGAAATTAAAATCTGATGCAATAATCCCAAATAAGAAGGATTT,"Intron (Cdh23-201/Cdh23, intron 7 of 66)",10,60302748,60657333,354586,2,Cdh23-201,129337,Cdh23-201;Cdh23-203;Cdh23-202;Cdh23-204;Cdh23-205;Cdh23-209;Cdh23-210,Cdh23;Cdh23;Cdh23;Cdh23;Cdh23;Cdh23;Cdh23,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,14,22295,ENSMUSG00000012819,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27443,cg14768660,-0.00000719,0.00000451,-1.59267314,0.112252641,loss,ns,0.0000154,0.00000767,2.006992044,0.045618408,pos,ns,0.003580621,0.002246197,1.594081385,0.111936823,pos,ns,0.951027025,-0.000102445,0.0000772,-1.326202398,0.185748927,neg,ns,0.572080601,Adnp,Adnp_threeUTR,2,168184856,168184905,168184856,168184857,50,-,CGGTAAGTGCACTTCTTACAGTAATAAACAGCTTGCTCTACACTGTCAGC,3' UTR,2,168180986,168206922,25937,2,Adnp-201,22017,Adnp-201;Adnp-202;Adnp-204;Gm20716-201,Adnp;Adnp;Adnp;Gm20716,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,3,11538,ENSMUSG00000051149,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18038,cg04647787,-0.00000926,0.00000405,-2.285556719,0.022954985,loss,ns,0.0000138,0.00000688,2.006930597,0.045624989,pos,ns,-0.001798825,0.002016563,-0.892024884,0.373071462,neg,ns,0.428207971,0.0000705,0.0000693,1.01681589,0.310033938,pos,ns,0.89103183,Pola1,Pola1_Intron,X,93377819,93377868,93377867,93377868,50,-,TTGCTAGTAATGGATATACAACAACCTTTGCCAGCCAACTGAAGCAAACG,"Intron (Pola1-201/Pola1, intron 35 of 36)",20,93304767,93632155,327389,2,Pola1-201,254287,Pola1-201,Pola1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,59,62,18968,ENSMUSG00000006678,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15194,cg24537475,0.00000149,0.0000078,0.190670209,0.848908786,gain,ns,-0.0000266,0.0000133,-2.006497622,0.045671381,neg,ns,-0.004860266,0.003883917,-1.251382583,0.211738423,neg,ns,0.674200326,-0.0000779,0.000133568,-0.583584867,0.559923993,neg,ns,0.815047177,Ddx17,Ddx17_Intron,15,79533485,79533534,79533533,79533534,50,+,ACGAGAAGGCACTTATCACAGGGGGCAGCTTGAGTCTCCGGCTAGGGTCG,"Intron (Ddx17-201/Ddx17, intron 11 of 12)",15,79527736,79546741,19006,2,Ddx17-201,13207,Ddx17-201;Ddx17-203;Ddx17-204;Ddx17-202,Ddx17;Ddx17;Ddx17;Ddx17,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,14,67040,ENSMUSG00000055065,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9754,cg19332776,0.0000541,0.00000921,5.870939453,1.11E-08,gain,yes,-0.0000314,0.0000156,-2.006349603,0.045687251,neg,ns,0.002472897,0.004582189,0.539675898,0.589807993,pos,ns,0.229289346,0.00012872,0.000157581,0.816851081,0.414640829,pos,ns,0.764353904,Trps1,Trps1_Exon,15,50661160,50661209,50661160,50661161,50,+,CGGAGAGCTTATATTTACTCCAGAACCGCAGCCAATCAGCTTCACTCTGG,"Exon (Trps1-202/Trps1, exon 6 of 6)",15,50654752,50889691,234940,2,Trps1-202,228482,Trps1-202;Trps1-206;Trps1-204;Trps1-205;Trps1-207;Trps1-201,Trps1;Trps1;Trps1;Trps1;Trps1;Trps1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,36,83925,ENSMUSG00000038679,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27305,cg14667075,0.0000168,0.00000654,2.575004472,0.010487375,gain,ns,-0.0000223,0.0000111,-2.006111156,0.045712824,neg,ns,0.000568879,0.003255404,0.174749271,0.861390725,pos,ns,0.064799809,-0.0000889,0.000111953,-0.79390957,0.427855367,neg,ns,0.697436779,Rpsa-ps1,Rpsa-ps1_Intergenic_upstream,1,163574947,163574996,163574947,163574948,50,+,CGTGTCAAGGGCATTTACAGTCGGCGTCAGAATGTTATGTCGGTCTGAGG,Distal Intergenic,1,163623793,163624678,886,1,Rpsa-ps1-201,-48797,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,4,665237,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14143,cg14991487,0.0000855,0.00000749,11.40832391,2.09E-25,gain,yes,-0.0000255,0.0000127,-2.006091539,0.045714929,neg,ns,0.009929605,0.003728996,2.662809095,0.008153701,pos,ns,2.088645209,-0.000283714,0.00012824,-2.212369757,0.027669776,neg,ns,0.064165833,Hoxd9,Hoxd9_fiveUTR,2,74697885,74697934,74697933,74697934,50,-,CCCCAGTTTAGCGGACTGATTTACTCCCGGTATTGGTAAATATGATCACG,Promoter (<=1kb),2,74697727,74700208,2482,1,Hoxd9-201,158,Hoxd10-201;Hoxd9-201,Hoxd10;Hoxd9,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,8,15438,ENSMUSG00000043342,mapped to different genes,2,74697896,74698814,919,*,919,110,0.717083787,0.931104357,0.119695321,7.60E-93,CpGisland,TRUE,U3,Pr-B
20754,cg22295874,-0.00000758,0.0000112,-0.675726435,0.499718106,loss,ns,0.0000382,0.000019,2.006014632,0.04572318,pos,ns,0.014530065,0.005580404,2.603765834,0.009664369,pos,ns,2.014826516,-0.000257209,0.00019191,-1.340259665,0.181142396,neg,ns,0.847933687,Cpne4,Cpne4_Exon,9,105019756,105019805,105019756,105019757,50,+,CGGTGTCTAGGTCTCTCATGACTTTGCAATCAACTTTAATGAAGACAACC,"Exon (Cpne4-201/Cpne4, exon 13 of 16)",9,104569483,105034544,465062,1,Cpne4-201,450273,Cpne4-201;Cpne4-202;Cpne4-206,Cpne4;Cpne4;Cpne4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,74020,ENSMUSG00000032564,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10124,cg13245181,0.0000467,0.0000102,4.563161073,0.00000727,gain,ns,-0.0000349,0.0000174,-2.005942235,0.045730949,neg,ns,0.007689508,0.005092711,1.509904444,0.132086376,pos,ns,0.879141974,-0.000170867,0.000175138,-0.975613452,0.330016743,neg,ns,0.376076283,Gm28308,Gm28308_Intron,6,52197465,52197514,52197465,52197466,50,-,CGTGCTCTGCTGGCGATTCCTAGGGTGTGCAGATTTATCTTCTCTGCATT,"Intron (Hoxaas3-202/Hoxaas3-202, intron 1 of 2)",6,52163359,52213339,49981,2,Gm28308-201,15825,Gm28308-201;Hoxa3-201;Hoxa3-203;Hoxa5-201,Gm28308;Hoxa3;Hoxa3;Hoxa5,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,46,103,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
20141,cg16455791,-0.00000909,0.00000617,-1.473644078,0.141592134,loss,ns,0.000021,0.0000105,2.005626882,0.045764801,pos,ns,0.001640437,0.003068618,0.534585162,0.593319943,pos,ns,0.226711054,0.000120469,0.00010553,1.141569784,0.254513923,pos,ns,0.979953795,Calcoco1,Calcoco1_Intergenic_upstream,15,102737279,102737328,102737279,102737280,50,-,CGATTGTTTAGTATTCATGGGGCGACGCAATCTCTCCCACATCTGCTTAG,Distal Intergenic,15,102706777,102722178,15402,2,Calcoco1-201,-15150,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,20,29,67488,ENSMUSG00000023055,conserved gene but different region,15,102737186,102737305,120,*,120,10,0.666666667,0.78125,0.083333333,0.000000362,CpGisland,TRUE,U11,Tr-P
2765,cg00059486,0.000124385,0.00000977,12.7337262,3.67E-30,gain,yes,-0.0000333,0.0000166,-2.005591334,0.045768618,neg,ns,0.007975295,0.004861708,1.640430749,0.101929867,pos,ns,0.991698543,-0.000128513,0.000167194,-0.76864921,0.44268676,neg,ns,0.070143219,Prdm13,Prdm13_Promoter,4,21687954,21688003,21687954,21687955,50,-,CGTGAACGACACGCGAACAATTTTATCAATAGGACCATGTAAAGGCCGAC,Promoter (2-3kb),4,21677480,21685963,8484,2,Prdm13-205,-2040,Prdm13-205;Prdm13-201;Prdm13-202;Prdm13-203;Prdm13-206;Prdm13-204,Prdm13;Prdm13;Prdm13;Prdm13;Prdm13;Prdm13,0;0;0;0;0;-2109,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,19,23,230025,ENSMUSG00000040478,conserved gene and region,4,21687850,21688001,152,*,152,12,0.546052632,1.062937063,0.078947368,2.89E-08,CpGisland,TRUE,U13,Hc-P
18678,cg06708132,-0.0000387,0.0000156,-2.475674199,0.013832489,loss,ns,0.0000533,0.0000266,2.005280638,0.045801994,pos,ns,0.005544609,0.00778702,0.712032229,0.476980329,pos,ns,0.321499531,-0.000381726,0.000267795,-1.425440499,0.155035997,neg,ns,0.488689511,Skap1,Skap1_Intron,11,96714493,96714542,96714541,96714542,50,+,AATAAAATTTCACAGGTGATAAATTTTTCCAATTTCCCTGGCAGAATTCG,"Intron (Skap1-204/Skap1, intron 9 of 12)",11,96464593,96758941,294349,1,Skap1-204,249900,Skap1-204;Skap1-203;Skap1-209;Skap1-201;Skap1-207,Skap1;Skap1;Skap1;Skap1;Skap1,0;0;0;0;6258,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,40,46,78473,ENSMUSG00000057058,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27711,cg01001431,-0.0000108,0.00000697,-1.543578291,0.123710705,loss,ns,-0.0000238,0.0000118,-2.004979907,0.045834318,neg,ns,-0.009755662,0.003470795,-2.810785689,0.005256605,neg,ns,2.27929467,0.0000916,0.00011936,0.767314864,0.443478339,pos,ns,0.880747566,1700016C15Rik,1700016C15Rik_Intergenic_upstream,1,177608819,177608868,177608867,177608868,50,-,GTTGTCCTGTAACTTGGCTTGAAGCGGAAGATGACCCGTGTCACCTGGCG,Distal Intergenic,1,177729814,177753324,23511,1,1700016C15Rik-201,-120995,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,69428,ENSMUSG00000015962,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15925,cg24901743,-0.00000375,0.00000104,-3.60799524,0.000359597,loss,ns,0.00000354,0.00000177,2.004888768,0.045844118,pos,ns,0.000458025,0.000517649,0.884817865,0.376940636,pos,ns,0.423727041,-0.00000126,0.0000178,-0.070690194,0.943689906,neg,ns,0.034832403,Tlnrd1,Tlnrd1_fiveUTR,7,83884278,83884327,83884326,83884327,50,-,AACCTCCCTGGAGCCTATAGAAATCTTTTGTGTGGCGTCACCGCCTTTCG,Promoter (<=1kb),7,83879873,83884305,4433,2,Tlnrd1-201,0,Mesd-203;Tlnrd1-201,Mesd;Tlnrd1,-139;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,3,80889,ENSMUSG00000070462,conserved gene but different region,7,83883634,83884637,1004,*,1004,124,0.730079681,0.927607069,0.123505976,1.63E-106,CpGisland,TRUE,U1,Pr-A
26430,cg13460367,-0.0000558,0.0000154,-3.620552764,0.000343262,loss,ns,0.0000525,0.0000262,2.004854781,0.045847773,pos,ns,-0.004969801,0.007674425,-0.647579575,0.517736192,neg,ns,0.285891475,0.0000768,0.000263923,0.291181689,0.771107094,pos,ns,0.657748813,Gm43575,Gm43575_Intergenic_upstream,3,147930758,147930807,147930806,147930807,50,-,TTTTGTAAACCACTTAAGGCTGTGATAAAATCCTACTTGACTGGCCCACG,Distal Intergenic,3,148653060,148653575,516,1,Gm43575-201,-722302,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,3,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12406,cg20735499,-0.00000801,0.00000435,-1.839151039,0.06684922,loss,ns,-0.0000148,0.0000074,-2.004317883,0.045905545,neg,ns,0.004403597,0.002167362,2.031777334,0.043028732,pos,ns,1.366241456,-0.000362347,0.0000745,-4.861404051,0.00000186,neg,ns,0.893194204,Fign,Fign_Promoter,2,64099046,64099095,64099046,64099047,50,+,CGGAACATAAGGTTTAAGAAACACACACACGTTTTCTGGGGTCTCTTGTT,Promoter (1-2kb),2,63977337,64098038,120702,2,Fign-201,-1008,Fign-203;Fign-201;Fign-202;Fign-204,Fign;Fign;Fign;Fign,0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,12,84,60344,ENSMUSG00000075324,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5905,cg14927901,-0.00000103,0.00000233,-0.442717769,0.65827864,loss,ns,0.00000792,0.00000395,2.004194365,0.045918845,pos,ns,0.002739719,0.001157549,2.36682712,0.018555557,pos,ns,1.731526015,-0.0000203,0.0000398,-0.509121563,0.611029204,neg,ns,0.94679429,Ctnna1,Ctnna1_fiveUTR,18,35213691,35213740,35213739,35213740,50,+,AGAAACTCCAGACTACGACAGTCCCAGAACAGGCGTACTGGGATAGTCCG,5' UTR,18,35118859,35254779,135921,1,Ctnna1-201,94832,Ctnna1-201;Ctnna1-204;Ctnna1-210;Ctnna1-203;Ctnna1-202;Lrrtm2-201;Lrrtm2-202;Lrrtm2-203,Ctnna1;Ctnna1;Ctnna1;Ctnna1;Ctnna1;Lrrtm2;Lrrtm2;Lrrtm2,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,6,13,12385,ENSMUSG00000037815,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5765,cg00103598,0.000036,0.0000194,1.858244894,0.064082031,gain,ns,0.000066,0.0000329,2.004104168,0.045928558,pos,ns,0.00798439,0.009645709,0.827766065,0.40843977,pos,ns,0.388871978,-0.000223212,0.000331715,-0.672904138,0.501509576,neg,ns,0.174918558,Sox2,Sox2_Intron,3,34662017,34662066,34662065,34662066,50,+,TGAACAACAATGTAAATCACAATCGCTTTATTATTTAATAACGTCAAACG,"Intron (Sox2ot-203/Sox2ot-203, intron 3 of 3)",3,34650405,34652461,2057,1,Sox2-201,11612,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,34,62,20674,ENSMUSG00000074637,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
3515,cg26100255,-0.0000386,0.00000682,-5.654338392,3.55E-08,loss,yes,0.0000232,0.0000116,2.003988425,0.045941026,pos,ns,-0.002693986,0.003396452,-0.793176595,0.42828159,neg,ns,0.368270593,-0.000112814,0.000116804,-0.965841147,0.334876536,neg,ns,0.633818478,Npsr1,Npsr1_fiveUTR,9,24286774,24286823,24286822,24286823,50,+,CTCTACCTACGTCCTGGTGTCCCTCAGCATAGACAGATACCATGCCATCG,5' UTR,9,24097996,24289892,191897,1,Npsr1-202,188778,Npsr1-202;Npsr1-201;Npsr1-204,Npsr1;Npsr1;Npsr1,0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,2,319239,ENSMUSG00000043659,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2252,cg06019378,-0.0000101,0.00000879,-1.152313516,0.250080096,loss,ns,0.0000299,0.0000149,2.003905682,0.045949941,pos,ns,0.006178491,0.004374496,1.41238916,0.158838497,pos,ns,0.799044232,-0.000245052,0.000150439,-1.628916613,0.104346419,neg,ns,0.823133271,Gm5252,Gm5252_Intergenic_downstream,1,18849297,18849346,18849297,18849298,50,-,CGCTCCACCTGGGAGCCCAGTACCCATGCCAAGTTCATTTCCATAGTCTT,Distal Intergenic,1,18708428,18709336,909,1,Gm5252-201,140918,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,2,383499,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27577,cg27067501,0.000000329,0.0000118,0.027901847,0.977758389,gain,ns,0.0000401,0.00002,2.003544158,0.045988908,pos,ns,0.011190261,0.00586725,1.907241149,0.057413438,pos,ns,1.240986443,-0.000360506,0.000201774,-1.786680143,0.074966268,neg,ns,0.585110566,Tshz2,Tshz2_Intron,2,170028817,170028866,170028865,170028866,50,+,TTTGAAATTAAAAACAAATGTGTCAGCTCCCTTCATGGGCTGGAGCGCCG,"Intron (Tshz2-203/Tshz2, intron 1 of 1)",2,169884893,170071816,186924,1,Tshz2-203,143924,Tshz2-203;Tshz2-205,Tshz2;Tshz2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,21,30,228911,ENSMUSG00000047907,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8935,cg01244841,0.0000819,0.00000901,9.087255533,1.24E-17,gain,yes,-0.0000307,0.0000153,-2.003513896,0.045992171,neg,ns,-0.00272589,0.004486295,-0.607603899,0.543895042,neg,ns,0.2644849,0.000281075,0.000154283,1.821813222,0.069446859,pos,ns,0.442688103,4931429L15Rik,4931429L15Rik_Exon,9,46338060,46338109,46338108,46338109,50,+,GGTCTGCAGAGAGATCAACACCCTTCAAACCAGCTGCCTTGTTGGCTGCG,"Exon (Gm31374-201/Gm31374-201, exon 1 of 5)",9,46303361,46319986,16626,2,4931429L15Rik-201,-18074,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,22,74361,ENSMUSG00000056617,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25738,cg17047390,0.000000517,0.00000105,0.490550108,0.62409172,gain,ns,0.00000359,0.00000179,2.003435462,0.04600063,pos,ns,0.001592565,0.000524377,3.037061409,0.002591884,pos,ns,2.5863844,-0.0000219,0.000018,-1.214544167,0.225464337,neg,ns,0.965343066,Rap1gds1,Rap1gds1_Intron,3,138969879,138969928,138969879,138969880,50,-,CGCATGCGCTGGTGTGAACACTTACCTACCTACATTTGAATTTCAATGGT,"Intron (Rap1gds1-202/Rap1gds1, intron 5 of 14)",3,138925902,139075201,149300,2,Rap1gds1-202,105273,Rap1gds1-202;Rap1gds1-205;Rap1gds1-201;Rap1gds1-204;Rap1gds1-209;Rap1gds1-208,Rap1gds1;Rap1gds1;Rap1gds1;Rap1gds1;Rap1gds1;Rap1gds1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,2,229877,ENSMUSG00000028149,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14148,cg24900982,0.000039,0.00000444,8.780997182,1.12E-16,gain,yes,-0.0000151,0.00000754,-2.003261624,0.046019381,neg,ns,0.001126044,0.002209627,0.50960819,0.61068857,pos,ns,0.214180209,0.0000371,0.000076,0.488624969,0.625452709,pos,ns,0.128251054,Hoxd9,Hoxd9_Intron,2,74698902,74698951,74698950,74698951,50,+,TAGTTTTACTAACCTATAAAAACGTCTAGACGCCTACCCAAGCCTAGGCG,"Intron (Hoxd9-201/Hoxd9, intron 1 of 1)",2,74697727,74700208,2482,1,Hoxd9-201,1175,Hoxd10-201;Hoxd9-201,Hoxd10;Hoxd9,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,8,15438,ENSMUSG00000043342,mapped to different genes,2,74698885,74699026,142,*,142,11,0.478873239,1.381078691,0.077464789,0.00000016,CpGisland,TRUE,U13,Hc-P
147,cg15702079,-0.000000786,0.00000291,-0.269664153,0.787598053,loss,ns,-0.00000991,0.00000495,-2.002975267,0.046050284,neg,ns,-0.001515596,0.001450143,-1.045135426,0.296774646,neg,ns,0.527573205,0.0000751,0.0000499,1.505402941,0.133238721,pos,ns,0.936774501,Kdm2a,Kdm2a_Exon,19,4350237,4350286,4350285,4350286,50,+,GGTCACCCAGAAAGATGTCTCCCTGTTTCCCTGACAGCAGCCAATTCTCG,"Exon (Kdm2a-201/Kdm2a, exon 9 of 21)",19,4314419,4398285,83867,2,Kdm2a-201,47999,Kdm2a-201;Kdm2a-202;Kdm2a-203;Kdm2a-205;Kdm2a-206;Kdm2a-204,Kdm2a;Kdm2a;Kdm2a;Kdm2a;Kdm2a;Kdm2a,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,21,30,225876,ENSMUSG00000054611,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19220,cg00031262,0.0000227,0.00000956,2.37537302,0.018139107,gain,ns,-0.0000325,0.0000162,-2.002958562,0.046052087,neg,ns,-0.008480874,0.004760067,-1.781671309,0.07578171,neg,ns,1.1204356,0.000242217,0.000163698,1.479655581,0.13998067,pos,ns,0.745849817,Wnt1,Wnt1_Intergenic_downstream,15,98798329,98798378,98798329,98798330,50,+,CGCCCGTCAGCCTGGATTAATCTTCGGAGCCCTGGTGGGGTAGGAGACAC,Distal Intergenic,15,98789857,98793837,3981,1,Wnt1-201,8472,Wnt1-201,Wnt1,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,12,22408,ENSMUSG00000022997,conserved gene and region,15,98798040,98798354,315,*,315,21,0.666666667,0.6125,0.066666667,1.17E-12,CpGisland,TRUE,U13,Hc-P
798,cg16861669,0.0000311,0.00000546,5.696009115,2.85E-08,gain,yes,-0.0000186,0.00000928,-2.00270773,0.046079171,neg,ns,-0.001939778,0.00271989,-0.713182429,0.476269396,neg,ns,0.322147325,0.0000132,0.0000935,0.141161801,0.887833807,pos,ns,0.86497132,Chd7,Chd7_Intron,4,8750971,8751020,8751019,8751020,50,-,CTATATTCATACATCTGCTTGCCTGCTGTGGCAGCTGCTGCTGCTTCACG,"Intron (Chd7-207/Chd7, intron 1 of 1)",4,8690406,8755906,65501,1,Chd7-207,60565,Chd7-207;Chd7-203;Chd7-201;Chd7-202;Chd7-204;Chd7-206,Chd7;Chd7;Chd7;Chd7;Chd7;Chd7,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,16,320790,ENSMUSG00000041235,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4169,cg07672376,-0.0000625,0.00000942,-6.640485916,1.40E-10,loss,yes,0.000032,0.000016,2.00241411,0.046110893,pos,ns,-0.003233867,0.004687193,-0.689936768,0.490750119,neg,ns,0.309139587,-0.0000467,0.000161192,-0.289854071,0.772121657,neg,ns,0.705874524,Gm47860,Gm47860_Intron,12,27143366,27143415,27143414,27143415,50,-,AGTAAGTTCCGTAGATCATTACCATACCAGTCATTTTTCAAAGATCCTCG,"Intron (Gm9866-207/Gm9866-207, intron 1 of 4)",12,27263155,27263506,352,2,Gm47860-201,120140,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27449,cg13540458,-0.0000242,0.00000855,-2.833607027,0.004904398,loss,ns,-0.0000291,0.0000145,-2.002291993,0.046124091,neg,ns,-0.004975101,0.004255641,-1.16906023,0.243277511,neg,ns,0.613898035,-0.0000872,0.000146351,-0.595801601,0.551742516,neg,ns,0.901503301,Pbx1,Pbx1_Intron,1,168245897,168245946,168245945,168245946,50,+,GGGTAATAATATTTTCCAGAACGCTCAAGCTAATAGTCCCATGATGGGCG,"Intron (Pbx1-208/Pbx1, intron 2 of 7)",1,168119364,168432270,312907,2,Pbx1-208,186324,Pbx1-208;Pbx1-205;Pbx1-206;Pbx1-201;Pbx1-202;Pbx1-204,Pbx1;Pbx1;Pbx1;Pbx1;Pbx1;Pbx1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,84,18514,ENSMUSG00000052534,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9130,cg22045492,-0.00000593,0.00000132,-4.482374594,0.0000104,loss,ns,0.0000045,0.00000225,2.002289774,0.046124331,pos,ns,0.001406883,0.0006587,2.135847147,0.033475109,pos,ns,1.475277994,-0.00004,0.0000227,-1.765376926,0.078484892,neg,ns,0.048300955,Taf5,Taf5_Promoter,19,47068412,47068461,47068412,47068413,50,+,CGGGCTTGTTTTGAATTTCCTGGGCCCGCCTCTAGGGCCACATGCCCGCC,Promoter (<=1kb),19,47067746,47083479,15734,1,Taf5-201,666,Taf5-201,Taf5,0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,2,10,226182,ENSMUSG00000025049,conserved gene and region,19,47067495,47068485,991,*,991,110,0.696266398,0.916628127,0.110998991,8.88E-89,CpGisland,TRUE,NA,NRS
21830,cg01374344,0.0000122,0.00000619,1.967603922,0.050004861,gain,ns,0.000021,0.0000105,2.00222192,0.046131666,pos,ns,0.003289598,0.00307855,1.068554337,0.286101896,pos,ns,0.543479264,0.0000477,0.000105871,0.450440553,0.65270767,pos,ns,0.76796711,Lmo1,Lmo1_Intron,7,109221265,109221314,109221313,109221314,50,-,GATTAGTGGGCTGTCATGTTATTGCAGGCTGCTATTTACATTTCTCTCCG,"Intron (Gm45024-201/Gm45024-201, intron 1 of 2)",7,109138675,109175207,36533,2,Lmo1-202,-46107,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,66,109594,ENSMUSG00000036111,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26466,cg11662147,0.00000746,0.00000822,0.907369348,0.364916299,gain,ns,0.000028,0.000014,2.002028002,0.046152634,pos,ns,0.005420956,0.004092414,1.324635394,0.186267774,pos,ns,0.729862274,0.000064,0.000140738,0.454601043,0.649714447,pos,ns,0.853180062,Gm572,Gm572_Intron,4,148662821,148662870,148662821,148662822,50,+,CGCAATAACTATTCATTGCCCTGGGTTAAGTGTGCCCAGGGGCACCCGTA,"Intron (Gm572-201/Gm572, intron 5 of 10)",4,148643317,148671572,28256,1,Gm572-201,19504,Gm572-201,Gm572,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,11,230909,ENSMUSG00000070577,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16765,cg25430489,0.00000189,0.00000256,0.73867864,0.460661043,gain,ns,-0.00000871,0.00000435,-2.001612702,0.046197568,neg,ns,-0.003726713,0.001274496,-2.924067598,0.003709481,neg,ns,2.430686799,0.0000676,0.0000438,1.542346234,0.124009632,pos,ns,0.93218941,Esrrb,Esrrb_Exon,12,86488597,86488646,86488597,86488598,50,+,CGGAGGCGCAAGTCCTGCCAGGCCTGCCGCTTCATGAAATGCCTCAAAGT,"Exon (Esrrb-204/Esrrb, exon 3 of 7)",12,86361117,86521628,160512,1,Esrrb-204,127480,Esrrb-204;Esrrb-202;Esrrb-203;Esrrb-201;Esrrb-206,Esrrb;Esrrb;Esrrb;Esrrb;Esrrb,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,19,26380,ENSMUSG00000021255,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1930,cg02379609,-0.00000306,0.00000278,-1.097909209,0.273096164,loss,ns,-0.00000947,0.00000473,-2.001315258,0.046229772,neg,ns,0.004319906,0.001385991,3.116835246,0.001999303,pos,ns,2.69912144,-0.0000733,0.0000477,-1.537359572,0.125225305,neg,ns,0.947902886,Rarb,Rarb_threeUTR,14,16436823,16436872,16436823,16436824,50,+,CGATCTTAATAATGCACTTGGTGGCCAGTTCACTGAATTTGTCCCAGAGG,3' UTR,14,16430839,16575543,144705,2,Rarb-201,138671,Rarb-201;Rarb-207;Rarb-202;Top2b-201,Rarb;Rarb;Rarb;Top2b,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,16,218772,ENSMUSG00000017491,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4176,cg07425611,-0.00000562,0.00000239,-2.352894432,0.019252547,loss,ns,0.00000812,0.00000406,2.00128271,0.046233298,pos,ns,0.002304213,0.001188348,1.939004861,0.053408005,pos,ns,1.272393643,-0.000118274,0.0000409,-2.894097934,0.00407215,neg,ns,0.950391082,Gm49977,Gm49977_Intergenic_upstream,18,27205168,27205217,27205168,27205169,50,+,CGAAAGATAATTTGAATCCTGTCAAGGCAAACAAGAATATGCTCACAAAT,Distal Intergenic,18,27090843,27091187,345,2,Gm49977-201,-113981,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,3,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5482,cg13062722,-0.000000594,0.00000113,-0.526505266,0.598913694,loss,ns,0.00000384,0.00000192,2.001178596,0.046244575,pos,ns,0.000838445,0.000561919,1.49210978,0.13668731,pos,ns,0.864271803,-0.0000182,0.0000193,-0.942962082,0.346434587,neg,ns,0.969439712,Mvb12b,Mvb12b_Intron,2,34065713,34065762,34065713,34065714,50,-,CGAACATGCTGAAACCTGATTAGAGTGACAAGCACTGACTGATACTGCAA,"Intron (C230014O12Rik-201/C230014O12Rik-201, intron 1 of 3)",2,33729953,33887946,157994,2,Mvb12b-201,-177816,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,28,47,72543,ENSMUSG00000038740,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21904,cg15287456,0.0000201,0.00000543,3.692076439,0.000262757,gain,ns,-0.0000185,0.00000923,-2.001150014,0.046247672,neg,ns,-0.003873841,0.002703007,-1.433159741,0.152819921,neg,ns,0.81582003,0.000177188,0.000093,1.906142488,0.057556355,pos,ns,0.096726155,Bdnf,Bdnf_fiveUTR,2,109676338,109676387,109676386,109676387,50,-,AAATGCAAGTGTTTATCTCCAGGATCTAGCCACCGGGGTGGTGTAAGCCG,5' UTR,2,109674700,109727007,52308,1,Bdnf-201,1638,Bdnf-201;Bdnf-207;Bdnf-208;Bdnf-210;Bdnf-206,Bdnf;Bdnf;Bdnf;Bdnf;Bdnf,0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,8,18,12064,ENSMUSG00000048482,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
7068,cg00906973,0.0000514,0.00000614,8.361414662,2.13E-15,gain,yes,-0.0000209,0.0000104,-2.001085938,0.046254614,neg,ns,0.005251436,0.003057298,1.717671985,0.086855086,pos,ns,1.061204746,-0.00021594,0.00010514,-2.053827009,0.040830889,neg,ns,0.12269001,Tfap2a,Tfap2a_fiveUTR,13,40738274,40738323,40738322,40738323,50,-,TGCTCACCAACATCTCACCTGGTCATAAAGAGCTGGGTTGCTACCTGCCG,Promoter (<=1kb),13,40716605,40738376,21772,2,Tfap2a-203,53,Tfap2a-202;Tfap2a-203;Tfap2a-208;Tfap2a-206;Tfap2a-204,Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,6,57,21418,ENSMUSG00000021359,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
3121,cg08179830,-0.0000117,0.00000204,-5.715647625,2.57E-08,loss,yes,-0.00000694,0.00000347,-2.000911493,0.046273519,neg,ns,0.001953394,0.001015901,1.922819918,0.05541863,pos,ns,1.256344215,-0.00009,0.0000349,-2.57604168,0.010456639,neg,ns,0.955011454,Kat6a,Kat6a_fiveUTR,8,22862165,22862214,22862213,22862214,50,-,GGGATAACGACTCTATGGATATACAGAATCCTTCACCATGGTAAAACTCG,5' UTR,8,22859535,22943259,83725,1,Kat6a-202,2630,Kat6a-202;Kat6a-204;Kat6a-201,Kat6a;Kat6a;Kat6a,0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,6,244349,ENSMUSG00000031540,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13304,cg20096563,0.00000319,0.00000138,2.313677361,0.021339287,gain,ns,-0.00000468,0.00000234,-2.000833887,0.046281931,neg,ns,-0.001071599,0.000685917,-1.562286563,0.119240741,neg,ns,0.923575334,0.0000165,0.0000236,0.698601112,0.485325094,pos,ns,0.04299686,Egr3,Egr3_Promoter,14,70076764,70076813,70076812,70076813,50,+,CCCGCTTCCTGCTTTCTAATGTTCCATTGTGAGGAGCTTCCATTGTGACG,Promoter (<=1kb),14,70077203,70079955,2753,1,Egr3-201,-390,Egr3-201;Egr3-204;Egr3-203;Egr3-202,Egr3;Egr3;Egr3;Egr3,0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,10,19,13655,ENSMUSG00000033730,conserved gene and region,14,70076812,70076877,66,*,66,7,0.621212121,1.105263158,0.106060606,0.00000889,CpGisland,TRUE,U3,Pr-B
26906,cg01391058,-0.0000669,0.0000115,-5.808880282,1.56E-08,loss,yes,0.0000391,0.0000196,2.000727168,0.046293502,pos,ns,-0.003593739,0.005729611,-0.627222184,0.530975287,neg,ns,0.274925691,-0.0000346,0.000197041,-0.175849576,0.860526934,neg,ns,0.63593799,Prdm16,Prdm16_Intron,4,154550134,154550183,154550182,154550183,50,-,CAGTTTCTATGGAAATGAGCTTATAACTATTCATTTTCTCCCCATTCCCG,"Intron (Prdm16-201/Prdm16, intron 1 of 16)",4,154316125,154636866,320742,2,Prdm16-201,86683,Prdm16-201;Prdm16-202;Prdm16-203;Prdm16-204;Prdm16-205;Prdm16-206;Prdm16-210;Prdm16-207;Prdm16-212,Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,32,70673,ENSMUSG00000039410,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
1882,cg24799293,0.000263249,0.0000233,11.28667726,5.59E-25,gain,yes,-0.0000793,0.0000396,-2.000615802,0.046305578,neg,ns,0.013871893,0.011608543,1.194972791,0.233011065,pos,ns,0.632623455,-0.000619998,0.000399217,-1.55303652,0.121434695,neg,ns,0.133096145,Cacna2d1,Cacna2d1_fiveUTR,5,15935007,15935056,15935007,15935008,50,-,CGCGAAGATGGCTGCTGGCTGCCTGCTGGCCTTGACTCTGACACTTTTCC,Promoter (<=1kb),5,15934691,16374511,439821,1,Cacna2d1-205,316,Cacna2d1-205;Cacna2d1-203;Cacna2d1-201;Cacna2d1-206;Cacna2d1-209;Cacna2d1-202;Cacna2d1-204;Cacna2d1-207,Cacna2d1;Cacna2d1;Cacna2d1;Cacna2d1;Cacna2d1;Cacna2d1;Cacna2d1;Cacna2d1,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,2,12293,ENSMUSG00000040118,conserved gene and region,5,15934343,15935010,668,*,668,101,0.785928144,0.996337646,0.151197605,1.99E-97,CpGisland,TRUE,U3,Pr-B
11062,cg01810016,-0.000000137,0.00000139,-0.098480447,0.921614444,loss,ns,0.00000473,0.00000237,2.000024126,0.046369785,pos,ns,0.001605102,0.000692989,2.316203153,0.021199158,pos,ns,1.673681398,-0.0000527,0.0000238,-2.211045133,0.027762324,neg,ns,0.959156553,Nkx2-1,Nkx2-1_Intergenic_downstream,12,56482822,56482871,56482822,56482823,50,+,CGCTTTGCATGCTAAGTATTTCACTTCACAAATTGACCCTCCGGTGTACT,Distal Intergenic,12,56531958,56535106,3149,2,Nkx2-1-202,52235,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,29,21869,ENSMUSG00000001496,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1265,cg16711706,-0.00000128,0.00000101,-1.25967379,0.208734602,loss,ns,0.00000345,0.00000172,1.999989748,0.046373518,pos,ns,0.001415837,0.000504678,2.805429169,0.005342532,pos,ns,2.272252882,-0.0000401,0.0000174,-2.310495088,0.021516991,neg,ns,0.976289198,Riok3,Riok3_threeUTR,18,12148918,12148967,12148918,12148919,50,-,CGCTTCAGTAAACTAAATCCACGTAAGATCATCCGCATGTGGGCAGAAAA,3' UTR,18,12128741,12157387,28647,1,Riok3-201,20177,Riok3-201;Riok3-204;Riok3-212;Riok3-205;Riok3-216;Riok3-214;Riok3-217;Riok3-206;Riok3-203;Riok3-210;Riok3-202,Riok3;Riok3;Riok3;Riok3;Riok3;Riok3;Riok3;Riok3;Riok3;Riok3;Riok3,0;0;0;0;0;0;0;0;-447;-3706;-3769,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,4,66878,ENSMUSG00000024404,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2794,cg08630790,-0.0000118,0.00000354,-3.3394548,0.000941891,loss,ns,0.000012,0.00000601,1.999933486,0.046379628,pos,ns,0.002153851,0.001760671,1.223313096,0.222140536,pos,ns,0.653372184,-0.0000956,0.0000605,-1.579117839,0.115328835,neg,ns,0.930050147,Klhl14,Klhl14_Intergenic_upstream,18,21764831,21764880,21764831,21764832,50,+,CGACTGTGTTATAAAACCAATGATCTGTTATATTCTGCAAGAATTTACAA,Distal Intergenic,18,21550379,21654718,104340,2,Klhl14-202,-110113,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,38,225266,ENSMUSG00000042514,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17828,cg18271972,-0.0000899,0.0000126,-7.141235446,6.62E-12,loss,yes,0.0000428,0.0000214,1.999837994,0.046389999,pos,ns,0.026564743,0.006265081,4.240127961,0.0000295,pos,ns,4.529917025,-0.000639684,0.000215456,-2.968983194,0.003220942,neg,ns,0.745935829,Irx3,Irx3_Intergenic_upstream,8,91948586,91948635,91948634,91948635,50,-,TTCTGATCCGCCAGAAATAGAGACTGGGTTAGTTCAATTTGTAACAAACG,Distal Intergenic,8,91798525,91802067,3543,2,Irx3-202,-146568,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,15,36,16373,ENSMUSG00000031734,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7510,cg07195315,-0.00000821,0.00000368,-2.228050467,0.026594359,loss,ns,0.0000125,0.00000626,1.999808469,0.046393206,pos,ns,0.002287875,0.00183311,1.248084389,0.212942013,pos,ns,0.671738645,-0.000024,0.000063,-0.379916175,0.704267788,neg,ns,0.062984573,Phactr1,Phactr1_Exon,13,42916782,42916831,42916782,42916783,50,-,CGTGTCCTTTGTGATCCACTGTCAACTAGGCAAGGAGATCAAACACATTT,"Exon (Phactr1-217/Phactr1, exon 1 of 5)",13,42680623,43138524,457902,1,Phactr1-205,236159,Phactr1-205;Phactr1-207;Phactr1-214;Phactr1-202;Phactr1-201;Phactr1-213;Phactr1-206;Phactr1-204;Phactr1-217,Phactr1;Phactr1;Phactr1;Phactr1;Phactr1;Phactr1;Phactr1;Phactr1;Phactr1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,218194,ENSMUSG00000054728,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19141,cg22449113,-0.00000282,0.0000029,-0.971091242,0.332259918,loss,ns,0.00000986,0.00000493,1.999728155,0.046401931,pos,ns,0.001738467,0.001443996,1.203927723,0.229535988,pos,ns,0.639149213,-0.0000375,0.0000497,-0.755719215,0.450391398,neg,ns,0.937521005,Emsy,Emsy_Exon,7,98639852,98639901,98639852,98639853,50,-,CGTGGTACTTGTGTAGGAATAGCAAACCACTACTGAAGGAACGATAAAAA,"Exon (Emsy-210/Emsy, exon 6 of 8)",7,98587137,98656779,69643,2,Emsy-202,16878,Emsy-202;Emsy-207;Emsy-201;Emsy-211;Emsy-210;Emsy-208;Emsy-209,Emsy;Emsy;Emsy;Emsy;Emsy;Emsy;Emsy,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,13,16,233545,ENSMUSG00000035401,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2024,cg21811373,-0.0000107,0.0000101,-1.061718078,0.289190115,loss,ns,0.0000344,0.0000172,1.999721553,0.046402649,pos,ns,-0.008943532,0.005035993,-1.775922244,0.076726611,neg,ns,1.115053983,0.000279348,0.000173187,1.612980444,0.107766246,pos,ns,0.788921339,Gm6350,Gm6350_Intergenic_downstream,3,17325038,17325087,17325086,17325087,50,-,AAGCCTGCACCATGGAAATAATCTACTTTTAAAACCCAGGAAACAAATCG,Distal Intergenic,3,17269456,17270794,1339,1,Gm6350-201,55631,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,3,622737,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15048,cg21225398,-0.0000015,0.00000183,-0.822917266,0.411187608,loss,ns,0.0000062,0.0000031,1.999572963,0.046418794,pos,ns,0.001213809,0.000908497,1.336062556,0.182508765,pos,ns,0.738716273,-0.00000845,0.0000312,-0.27058793,0.786888045,neg,ns,0.958621437,Gphn,Gphn_Exon,12,78627113,78627162,78627113,78627114,50,-,CGGCCATGACATTAAAAGAGGGGAATGTGTTTTGGCCAAAGGAACCCACA,"Exon (Gphn-201/Gphn, exon 17 of 24)",12,78226379,78684772,458394,1,Gphn-201,400734,Gphn-201;Gphn-202,Gphn;Gphn,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,11,268566,ENSMUSG00000047454,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20097,cg25584627,0.0000102,0.00000636,1.608640563,0.108712851,gain,ns,-0.0000216,0.0000108,-1.999360265,0.046441915,neg,ns,0.01068163,0.003166087,3.373763443,0.000835648,pos,ns,3.077976542,-0.000307032,0.000108881,-2.819870135,0.00511374,neg,ns,0.886253235,Gpatch8,Gpatch8_Intron,11,102531341,102531390,102531389,102531390,50,-,AACAGTTAAATGTAACACAAAGTAAGAAACTGTCCAATCACTAATGGTCG,"Intron (Gpatch8-206/Gpatch8, intron 2 of 7)",11,102475915,102556199,80285,2,Gpatch8-206,24809,Gpatch8-206;Gpatch8-205;Gpatch8-203,Gpatch8;Gpatch8;Gpatch8,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,3,237943,ENSMUSG00000034621,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
4,cg00709542,0.0000454,0.00000435,10.41990957,5.39E-22,gain,yes,-0.0000148,0.0000074,-1.999202651,0.046459054,neg,ns,0.001218034,0.002166928,0.562101723,0.57445291,pos,ns,0.240745566,0.000210336,0.0000745,2.822524733,0.005072663,pos,ns,0.874984854,Scaf8,Scaf8_Exon,17,3197974,3198023,3197974,3197975,50,-,CGGGTTTTTGATTATTTTGAAGGGGCCACTTCTCAACGAAAAGGTGATAA,"Exon (Scaf8-201/Scaf8, exon 20 of 20)",17,3114979,3198859,83881,1,Scaf8-201,82995,Scaf8-201,Scaf8,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,4,106583,ENSMUSG00000046201,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8196,cg18679877,-0.0000102,0.00000491,-2.084461201,0.037936552,loss,ns,-0.0000167,0.00000835,-1.999122877,0.046467731,neg,ns,-0.000472953,0.002445162,-0.193423978,0.846753609,neg,ns,0.072242944,-0.0000729,0.0000841,-0.86752016,0.386328098,neg,ns,0.909830483,Ebf1,Ebf1_Intron,11,44845524,44845573,44845524,44845525,50,-,CGCCGACATGTTACATTAATTTATAGGCACTGAGTGACTTATTAAAAGTG,"Intron (Ebf1-203/Ebf1, intron 6 of 15)",11,44617317,45004995,387679,1,Ebf1-203,228207,Ebf1-203;Ebf1-202;Ebf1-201,Ebf1;Ebf1;Ebf1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,80,13591,ENSMUSG00000057098,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2881,cg15738808,0.0000131,0.00000176,7.483600794,7.53E-13,gain,yes,0.00000596,0.00000298,1.998901871,0.046491776,pos,ns,0.001854405,0.000873611,2.12269001,0.034572194,pos,ns,1.461273054,-0.00000178,0.00003,-0.059283746,0.952764305,neg,ns,0.052036705,Otx1,Otx1_Promoter,11,22003317,22003366,22003365,22003366,50,-,AAAGGAGGTTTTACAAGATCCTTCTCTGGTTCACAAAAGTCAGCGACACG,Promoter (<=1kb),11,21996858,22002897,6040,2,Otx1-202,-469,Ehbp1-201;Ehbp1-202;Ehbp1-207;Otx1-201;Otx1-203;Otx1-202,Ehbp1;Ehbp1;Ehbp1;Otx1;Otx1;Otx1,0;0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,8,13,18423,ENSMUSG00000005917,mapped to different genes,11,22003360,22003444,85,*,85,8,0.517647059,1.407867495,0.094117647,0.00000348,CpGisland,TRUE,U3,Pr-B
16414,cg00133606,-0.0000199,0.00000334,-5.963411668,6.73E-09,loss,yes,0.0000113,0.00000567,1.998771124,0.046506006,pos,ns,-0.001475084,0.00166045,-0.888364183,0.375033655,neg,ns,0.425929757,0.0000599,0.0000571,1.049215015,0.294896449,pos,ns,0.946991155,Arel1,Arel1_Exon,12,84941774,84941823,84941822,84941823,50,-,TTCCAATCCCAGGAGACTTTGCAAGACCGGGGATCCAGGTAATTTCCCCG,"Exon (Arel1-202/Arel1, exon 4 of 19)",12,84918148,84970824,52677,2,Arel1-202,29001,Arel1-202;Arel1-201;Arel1-203;Arel1-208;Arel1-204;Arel1-206;Arel1-205,Arel1;Arel1;Arel1;Arel1;Arel1;Arel1;Arel1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,68497,ENSMUSG00000042350,conserved gene and region,12,84941801,84941896,96,*,96,9,0.552083333,1.24137931,0.09375,0.000000648,CpGisland,TRUE,U10,Tr-S
7178,cg27070699,0.00000127,0.00000107,1.188922649,0.235380026,gain,ns,-0.00000362,0.00000181,-1.998426784,0.0465435,neg,ns,-0.000359226,0.000531404,-0.675993947,0.499548479,neg,ns,0.301422359,0.00000248,0.0000183,0.135629129,0.892202503,pos,ns,0.015333803,Jade1,Jade1_fiveUTR,3,41563721,41563770,41563721,41563722,50,-,CGCTGCCTAGTGGAAATAATATAATACGTCATTAATATGGCGCCAAAAGA,5' UTR,3,41555731,41616864,61134,1,Jade1-201,7990,Jade1-201;Jade1-210;Jade1-214;Jade1-202;Jade1-209;Jade1-204;Jade1-203;Jade1-211;Jade1-206,Jade1;Jade1;Jade1;Jade1;Jade1;Jade1;Jade1;Jade1;Jade1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,16,269424,ENSMUSG00000025764,conserved gene and region,3,41563390,41564023,634,*,634,81,0.665615142,1.172679942,0.127760252,3.62E-71,CpGisland,TRUE,U1,Pr-A
20226,cg14940373,-0.000000707,0.00000742,-0.095194183,0.924222094,loss,ns,-0.0000252,0.0000126,-1.997774574,0.046614588,neg,ns,-0.004554687,0.003694976,-1.232670326,0.218632792,neg,ns,0.660284699,0.00015511,0.00012707,1.220665008,0.223140538,pos,ns,0.05080752,Hoxc11,Hoxc11_Promoter,15,102955356,102955405,102955404,102955405,50,-,TTTTATTATAACCTACAAAGCCCTCTCTCCCAACGACTCGACTTTTTACG,Promoter (<=1kb),15,102954427,102957708,3282,1,Hoxc11-201,929,Hoxc11-201,Hoxc11,0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,12,24,109663,ENSMUSG00000001656,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
13778,cg00976065,-0.0000272,0.0000101,-2.688963031,0.007555189,loss,ns,0.0000343,0.0000172,1.997708337,0.046621812,pos,ns,-0.004108037,0.005028134,-0.817010166,0.414550049,neg,ns,0.382423029,0.000213546,0.000172917,1.234960442,0.21778042,pos,ns,0.832126205,Eif1-ps3,Eif1-ps3_Intergenic_upstream,2,72598128,72598177,72598128,72598129,50,+,CGAACCTCATTCATAATAGATGCTAATCTTTTCAGGGCTGACTGATGACA,Distal Intergenic,2,72570481,72570822,342,2,Eif1-ps3-201,-27306,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,383712,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2771,cg16680249,0.0000687,0.00000525,13.10051702,1.66E-31,gain,yes,-0.0000178,0.00000891,-1.997698184,0.04662292,neg,ns,0.005846116,0.002610545,2.239423852,0.025837222,pos,ns,1.587754185,-0.000164033,0.0000898,-1.827129387,0.068641655,neg,ns,0.188700238,Prdm13,Prdm13_Promoter,4,21688097,21688146,21688097,21688098,50,-,CGCCGAGTTTTATTCTGTCCTGTGGCTCAGAGTTGAAGTTCCCCAAGTGA,Promoter (2-3kb),4,21677480,21685963,8484,2,Prdm13-205,-2183,Prdm13-205;Prdm13-201;Prdm13-202;Prdm13-203;Prdm13-206;Prdm13-204,Prdm13;Prdm13;Prdm13;Prdm13;Prdm13;Prdm13,0;0;0;0;0;-2252,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,19,23,230025,ENSMUSG00000040478,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10983,cg19888236,-0.00000609,0.00000275,-2.210839093,0.027776744,loss,ns,0.00000934,0.00000468,1.997244266,0.046672456,pos,ns,0.004834009,0.001370517,3.527143457,0.000483565,pos,ns,3.315545337,-0.000150666,0.0000471,-3.19668197,0.001533599,neg,ns,0.944271077,Gm50135,Gm50135_Intergenic_upstream,19,55999489,55999538,55999537,55999538,50,+,TTAATGAGTGACAGTTGGGTGTTTTCTGTCACTTCCTGAGGTAATGGCCG,Distal Intergenic,19,56012529,56012925,397,1,Gm50135-201,-12991,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,7,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9808,cg23856528,0.00000197,0.0000228,0.086423568,0.931185506,gain,ns,0.0000774,0.0000388,1.997194974,0.046677838,pos,ns,0.018290344,0.011355805,1.610660222,0.108271508,pos,ns,0.965485814,-0.000467517,0.000390525,-1.19714999,0.232162745,neg,ns,0.7297844,Gm13498,Gm13498_Promoter,2,50902414,50902463,50902462,50902463,50,-,GATAAGCATTTCTGAAATCTCTGTACATGACAAACAGCACTTTAATCTCG,Promoter (7-8kb),2,50909684,50911849,2166,1,Gm13498-201,-7270,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,1,227885,ENSMUSG00000083270,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9205,cg05052045,0.0000322,0.0000159,2.024711011,0.043754009,gain,ns,-0.0000539,0.000027,-1.99710651,0.046687498,neg,ns,0.054130677,0.00790855,6.844576312,4.11E-11,pos,yes,10.38585199,-0.001971512,0.000271974,-7.248887978,3.37E-12,neg,yes,0.278352858,Cadm1,Cadm1_Intron,9,47533571,47533620,47533619,47533620,50,-,AATATCCCTCATTAATGCCACTTTATATTTACAGTGTGTCACTGGAGACG,"Intron (Cadm1-204/Cadm1, intron 1 of 9)",9,47530173,47853385,323213,1,Cadm1-204,3398,Cadm1-204;Cadm1-209;Cadm1-206;Cadm1-202;Cadm1-203;Cadm1-207;Cadm1-205;Cadm1-211;Cadm1-210;Cadm1-208;Cadm1-201,Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,77,54725,ENSMUSG00000032076,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18024,cg22948726,-0.00000117,0.00000184,-0.634737183,0.526068006,loss,ns,0.00000624,0.00000312,1.997075099,0.046690929,pos,ns,0.002406872,0.000915511,2.628991371,0.00899068,pos,ns,2.04620746,-0.0000584,0.0000315,-1.856203871,0.064373217,neg,ns,0.957813783,Pola1,Pola1_Intron,X,93310852,93310901,93310900,93310901,50,-,TAAAGGACAATTTTTATTTTATCAATGCAACACAATTACATTACAGTGCG,"Intron (Pola1-201/Pola1, intron 36 of 36)",20,93304767,93632155,327389,2,Pola1-201,321254,Pola1-201,Pola1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,59,62,18968,ENSMUSG00000006678,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5566,cg16370362,0.000000135,0.00000162,0.083503671,0.933504954,gain,ns,0.0000055,0.00000276,1.996950382,0.046704552,pos,ns,0.001275436,0.00080732,1.579839804,0.115163332,pos,ns,0.938685778,-0.000031,0.0000278,-1.115115132,0.265664803,neg,ns,0.970749876,Pbx3,Pbx3_Intron,2,34275801,34275850,34275801,34275802,50,-,CGAGGCGCCGCTCCGTTAGCCCTCATTACCCCGATCACTGCAAATACAGA,"Intron (Pbx3-202/Pbx3, intron 2 of 7)",2,34171457,34372038,200582,2,Pbx3-202,96188,Pbx3-202;Pbx3-201;Pbx3-210;Pbx3-206;Pbx3-207;Pbx3-209;Pbx3-204;Pbx3-205;Pbx3-203,Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,82,18516,ENSMUSG00000038718,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26258,cg12687767,0.0000116,0.0000099,1.172202623,0.242015758,gain,ns,0.0000336,0.0000168,1.996655697,0.046736753,pos,ns,-0.002786677,0.004925042,-0.565817808,0.571926964,neg,ns,0.242659428,0.000168972,0.000169372,0.99764225,0.319230947,pos,ns,0.606371274,Rin2,Rin2_fiveUTR,2,145786221,145786270,145786221,145786222,50,+,CGGAAAAAGATCTTGGCAGGACTGTTGTTGTGAGTGTTCTGTGGCTTAGA,5' UTR,2,145675215,145787327,112113,1,Rin2-211,111006,Rin2-211;Rin2-204;Rin2-202;Rin2-201;Rin2-208;Rin2-210,Rin2;Rin2;Rin2;Rin2;Rin2;Rin2,0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,4,74030,ENSMUSG00000001768,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
15425,cg20276424,0.0000105,0.00000222,4.740262674,0.00000326,gain,ns,-0.00000755,0.00000378,-1.996640658,0.046738397,neg,ns,0.004750767,0.001107285,4.290464015,0.0000239,pos,ns,4.622382531,-0.0000667,0.0000381,-1.752762064,0.080631381,neg,ns,0.951341036,Tnrc6b,Tnrc6b_Exon,15,80879848,80879897,80879848,80879849,50,+,CGGGTGGGTCCTGGAACTTTGGCCCCCAGGACTCTAATGACAACAAATGG,"Exon (Tnrc6b-201/Tnrc6b, exon 8 of 25)",15,80711313,80941085,229773,1,Tnrc6b-201,168535,Tnrc6b-201;Tnrc6b-204;Tnrc6b-207;Tnrc6b-208;Tnrc6b-206;Tnrc6b-209,Tnrc6b;Tnrc6b;Tnrc6b;Tnrc6b;Tnrc6b;Tnrc6b,0;0;0;0;-2776;-4453,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,20,24,213988,ENSMUSG00000047888,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11993,cg19829166,-0.00000697,0.00000768,-0.906843984,0.365193652,loss,ns,0.0000261,0.0000131,1.996631565,0.046739391,pos,ns,0.003518511,0.00382328,0.920286086,0.35813885,pos,ns,0.445948566,4.17E-08,0.000131482,0.000317175,0.999747135,pos,ns,0.423541082,Fam241b,Fam241b_Intron,10,62129773,62129822,62129773,62129774,50,-,CGAAATCTATTTATTATTATTTTAGCAAACACTGGAGACAGGTGGGGCTT,"Intron (Fam241b-201/Fam241b, intron 2 of 2)",10,62108835,62139870,31036,2,Fam241b-201,10048,Fam241b-201;Fam241b-211;Fam241b-207;Fam241b-210;Fam241b-205;Neurog3-201;Neurog3-202;Neurog3-203,Fam241b;Fam241b;Fam241b;Fam241b;Fam241b;Neurog3;Neurog3;Neurog3,0;0;0;0;14098;-3268;-3276;-3353,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,4,69894,ENSMUSG00000020083,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
11476,cg25596825,0.00000541,0.0000141,0.383872988,0.701335741,gain,ns,-0.0000478,0.0000239,-1.99622752,0.046783576,neg,ns,0.045639895,0.00700897,6.511640658,2.99E-10,pos,ns,9.52368757,-0.001062823,0.000241038,-4.409360104,0.0000143,neg,ns,0.827726425,Tsc22d2,Tsc22d2_threeUTR,3,58437339,58437388,58437339,58437340,50,-,CGGAGGAGGAATGTGACATAATAATGATCGAAAGCCGAAAGTTTAAAAGT,3' UTR,3,58414715,58466783,52069,1,Tsc22d2-201,22624,Tsc22d2-201;Tsc22d2-203;Tsc22d2-202,Tsc22d2;Tsc22d2;Tsc22d2,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,7,72033,ENSMUSG00000027806,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1379,cg26485825,-0.0000121,0.00000607,-1.999932896,0.046379692,loss,ns,-0.0000206,0.0000103,-1.996194134,0.046787228,neg,ns,-0.003665073,0.003022957,-1.212413309,0.226277385,neg,ns,0.645358849,-0.0000386,0.000103959,-0.371057768,0.710847953,neg,ns,0.927181459,Lama3,Lama3_Exon,18,12504063,12504112,12504111,12504112,50,+,TCTGGCACAGGCTGACTCATGTGTGAAGTTTAAAGGTGGGGCCCCTGCCG,"Exon (Gm29200-201/Gm29200-201, exon 1 of 2)",18,12333819,12583013,249195,1,Lama3-201,170244,Gm29199-201;Lama3-201;Lama3-202,Gm29199;Lama3;Lama3,-4601;0;-87,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,16774,ENSMUSG00000024421,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22180,cg26166546,-0.0000301,0.0000125,-2.39794949,0.017078249,loss,ns,0.0000426,0.0000213,1.996172027,0.046789647,pos,ns,0.006106512,0.006245746,0.977707283,0.328981475,pos,ns,0.482828557,-0.000232961,0.000214791,-1.084593617,0.278944447,neg,ns,0.542946197,Slitrk5,Slitrk5_Exon,14,111679044,111679093,111679044,111679045,50,-,CGTCCTTTCGTGTGCAGAAACCATCGATTATTATGGGGAAATCTGTGACA,"Exon (Slitrk5-201/Slitrk5, exon 2 of 2)",14,111675097,111683141,8045,1,Slitrk5-201,3947,Slitrk5-201;Slitrk5-202,Slitrk5;Slitrk5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,10,75409,ENSMUSG00000033214,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
8620,cg27491295,-0.00000308,0.00000226,-1.36579286,0.172994071,loss,ns,0.00000765,0.00000383,1.995850429,0.046824845,pos,ns,0.00260963,0.001123359,2.323061056,0.02082274,pos,ns,1.68146212,-0.0000696,0.0000386,-1.800644939,0.072730747,neg,ns,0.938116193,Gm13475,Gm13475_Intergenic_downstream,2,45459243,45459292,45459243,45459244,50,-,CGTTCGTAAAACATTCATGGAAGGCAGCTCTGCAGTTTTATAGAAAAACA,Distal Intergenic,2,45329232,45329465,234,1,Gm13475-201,130060,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,21,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16613,cg26561972,-0.00000192,0.00000219,-0.877511705,0.380888318,loss,ns,0.00000741,0.00000371,1.995637901,0.046848118,pos,ns,0.002283399,0.001088194,2.098338073,0.036684285,pos,ns,1.43551994,-0.000033,0.0000374,-0.881390655,0.378789268,neg,ns,0.939013823,Btbd11,Btbd11_Exon,10,85629241,85629290,85629241,85629242,50,+,CGTCCACCCCGAGACCCGCCATTGGACGGCTCTGACTTTTGCTGTGTTGC,"Exon (Btbd11-203/Btbd11, exon 7 of 17)",10,85386814,85660292,273479,1,Btbd11-203,242427,Btbd11-203;Btbd11-201;Btbd11-202;Btbd11-206,Btbd11;Btbd11;Btbd11;Btbd11,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,13,13,74007,ENSMUSG00000020042,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1302,cg00264615,0.0000455,0.00000512,8.891200689,5.09E-17,gain,yes,-0.0000174,0.0000087,-1.995522873,0.046860718,neg,ns,0.012740863,0.00254918,4.99802345,0.00000097,pos,ns,6.013121858,-0.000143394,0.0000877,-1.635688563,0.102919665,neg,ns,0.124858624,Fezf2,Fezf2_Intergenic_downstream,14,12338346,12338395,12338346,12338347,50,+,CGCAGCTGCCTTGAGGTTGTTTATTTCCCAGCGTTTTCTCAAGACTCCTG,Distal Intergenic,14,12342094,12345844,3751,2,Fezf2-203,7449,Fezf2-203;Fezf2-201;Fezf2-202,Fezf2;Fezf2;Fezf2,0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,21,45,54713,ENSMUSG00000021743,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
6873,cg22656609,-0.000000375,0.00000172,-0.218633963,0.827079058,loss,ns,0.00000582,0.00000292,1.995491411,0.046864164,pos,ns,0.002082005,0.000854146,2.437527718,0.015349958,pos,ns,1.813892811,-0.0000786,0.0000294,-2.677365102,0.007815536,neg,ns,0.958200469,Kdm7a,Kdm7a_Exon,6,39149286,39149335,39149334,39149335,50,+,CTTAATTATTCTTCCATTTGTCAGCAGTAATCGTAGATCATTATCTTTCG,"Exon (Kdm7a-201/Kdm7a, exon 13 of 20)",6,39136623,39206789,70167,2,Kdm7a-201,57454,Kdm7a-201;Kdm7a-202,Kdm7a;Kdm7a,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,8,338523,ENSMUSG00000042599,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18491,cg16419429,0.00000101,0.00000563,0.179438571,0.857710574,gain,ns,0.0000191,0.00000956,1.995280136,0.046887316,pos,ns,-0.000880159,0.002801416,-0.314183542,0.753592971,neg,ns,0.122863161,0.0000613,0.0000963,0.635786169,0.525384877,pos,ns,0.94574192,Brwd1,Brwd1_Exon,16,96068488,96068537,96068488,96068489,50,+,CGTAGCAAAGACTGCCTTCCTGCACCAAGTAAAGAAGTGACTCTTGAAAT,"Exon (Brwd1-202/Brwd1, exon 5 of 42)",16,95992092,96082428,90337,2,Brwd1-202,13891,Brwd1-202;Brwd1-201;Brwd1-205;Brwd1-203,Brwd1;Brwd1;Brwd1;Brwd1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,93871,ENSMUSG00000022914,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6246,cg13151063,-0.00000164,0.00000149,-1.096781999,0.273587951,loss,ns,0.00000506,0.00000254,1.99527691,0.04688767,pos,ns,0.002423756,0.000743584,3.259558499,0.001239903,pos,ns,2.906612226,-0.0000658,0.0000256,-2.571387725,0.010595184,neg,ns,0.964819475,Ankhd1,Ankhd1_Exon,18,36581114,36581163,36581114,36581115,50,-,CGTAAATTGCTAGATGAAGGCAGAAGTGTAAATGAACATACAGAAGAAGG,"Exon (Ankhd1-205/Ankhd1, exon 4 of 5)",18,36559987,36583681,23695,1,Ankhd1-205,21127,Ankhd1-205;Ankhd1-201;Ankhd1-212;Ankhd1-208,Ankhd1;Ankhd1;Ankhd1;Ankhd1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,6,108857,ENSMUSG00000024483,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20879,cg00593231,0.00000279,0.000000582,4.794639692,0.00000253,gain,ns,-0.00000197,0.00000099,-1.995171587,0.046899215,neg,ns,0.000463221,0.000289899,1.59787225,0.111090167,pos,ns,0.954324379,-0.00000165,0.00000997,-0.165091381,0.86897966,neg,ns,0.012532805,Pax6,Pax6_Exon,2,105682267,105682316,105682267,105682268,50,+,CGTTTGTCGTGACGATGCAATTTCCCGGAGCGGAGCACTGTCACAAAGTG,"Exon (Pax6-221/Pax6, exon 1 of 2)",2,105668900,105697364,28465,1,Pax6-206,13367,Pax6-206;Pax6-207;Pax6-210;Pax6-214;Pax6-208;Pax6-202;Pax6-205;Pax6-225;Pax6-204;Pax6-201;Pax6-203;Pax6-224;Pax6-219;Pax6-221;Pax6-213;Pax6-211;Pax6-222;Pax6-212;Pax6-215;Pax6-223;Pax6-209;Pax6-216,Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,31,78,18508,ENSMUSG00000027168,conserved gene and region,2,105682176,105682419,244,*,244,18,0.524590164,1.074626866,0.073770492,1.12E-11,CpGisland,TRUE,NA,NRS
18031,cg26905937,-0.0000185,0.00000932,-1.980340306,0.048549144,loss,ns,0.0000316,0.0000158,1.995111915,0.046905757,pos,ns,0.010742654,0.004637924,2.316263338,0.021195828,pos,ns,1.673749606,-0.000452653,0.000159498,-2.837985541,0.004839328,neg,ns,0.807094431,Pola1,Pola1_Intron,X,93368053,93368102,93368053,93368054,50,-,CGTAATTAAGATGTATAATTATGTAGTAAAAAACATCATGGAAATAAAAC,"Intron (Pola1-201/Pola1, intron 36 of 36)",20,93304767,93632155,327389,2,Pola1-201,264053,Pola1-201,Pola1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,59,62,18968,ENSMUSG00000006678,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26454,cg11927473,0.0000295,0.00000487,6.066931868,3.80E-09,gain,yes,-0.0000165,0.00000827,-1.99510489,0.046906527,neg,ns,0.004919109,0.002422233,2.030815638,0.043126834,pos,ns,1.365252419,-0.000258096,0.0000833,-3.098380801,0.002124053,neg,ns,0.046604244,Foxa2,Foxa2_Promoter,2,148045617,148045666,148045665,148045666,50,-,TCAATATTTGATCACAAAGTTAATATTATCTCAAGGCTAACAGTGTGTCG,Promoter (<=1kb),2,148042877,148045948,3072,2,Foxa2-202,282,Foxa2-202;Foxa2-201;Foxa2-204;Foxa2-203,Foxa2;Foxa2;Foxa2;Foxa2,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,4,25,15376,ENSMUSG00000037025,conserved gene and region,2,148045665,148045780,116,*,116,9,0.620689655,1.074074074,0.077586207,0.00000318,CpGisland,TRUE,NA,NRS
26213,cg07223810,0.000121693,0.0000231,5.266759779,0.00000026,gain,yes,-0.0000783,0.0000393,-1.995081937,0.046909044,neg,ns,0.043255893,0.011500036,3.761370359,0.000202004,pos,ns,3.694639617,-0.001699611,0.000395485,-4.297533235,0.0000232,neg,ns,0.398287027,Sox5,Sox5_Intron,6,144503614,144503663,144503662,144503663,50,+,ATAACAGCTGATTTCTATTTATTAAGCTAAAAAGGTCACCATTTTCTACG,"Intron (Sox5-209/Sox5, intron 3 of 13)",6,143843739,144781977,938239,2,Sox5-209,278314,Sox5-209;Sox5-212,Sox5;Sox5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,71,20678,ENSMUSG00000041540,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13175,cg21309614,-0.0000413,0.0000167,-2.477989397,0.01374483,loss,ns,0.0000565,0.0000283,1.995075747,0.046909723,pos,ns,0.014040603,0.008299378,1.691765626,0.091695565,pos,ns,1.037651672,0.0000295,0.000285415,0.103437308,0.917682786,pos,ns,0.653485203,Gm7627,Gm7627_Intergenic_upstream,7,69665123,69665172,69665123,69665124,50,-,CGTTGATTATCTATCAGTGCTTACAGTCCTGTGAAAATAAGATAAATGAG,Distal Intergenic,7,69605842,69606840,999,2,Gm7627-201,-58332,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,11,665410,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10226,cg05977669,0.000138907,0.00000713,19.48101728,9.37E-56,gain,yes,-0.0000242,0.0000121,-1.995062453,0.046911181,neg,ns,0.00579533,0.00354886,1.633011776,0.103481752,pos,ns,0.985136228,0.00030691,0.000122045,2.51472731,0.012418323,pos,ns,0.258474243,Hoxa11,Hoxa11_Exon,6,52245979,52246028,52246027,52246028,50,+,TTGTAGCCACCTCAGGGGAAGCAACAGATCGTCACTCGGTGTTCTCACCG,Promoter (<=1kb),6,52242106,52245810,3705,2,Hoxa11-201,-169,Hoxa11-201;Hoxa11-202,Hoxa11;Hoxa11,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,15,18,15396,ENSMUSG00000038210,mapped to different genes,6,52246008,52246200,193,*,193,16,0.658031088,0.771614193,0.082901554,3.24E-11,CpGisland,TRUE,U13,Hc-P
8664,cg22774472,0.0000332,0.0000192,1.729975426,0.084629956,gain,ns,-0.0000651,0.0000326,-1.994941657,0.046924428,neg,ns,0.010488474,0.009563259,1.096746783,0.273603325,pos,ns,0.562878629,-0.000565813,0.00032888,-1.720426184,0.086352898,neg,ns,0.127804771,Col5a2,Col5a2_fiveUTR,1,45503163,45503212,45503211,45503212,50,-,GTCTGCCAAGCAACGGTCTGATTGATGGTAAACAACCAAATCAGAACACG,Promoter (<=1kb),1,45374321,45503282,128962,2,Col5a2-201,70,Col5a2-201;Col5a2-203,Col5a2;Col5a2,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,4,12832,ENSMUSG00000026042,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10158,cg09549073,0.000230137,0.000021,10.97405285,6.84E-24,gain,yes,-0.0000711,0.0000356,-1.994758894,0.046944476,neg,ns,0.031009652,0.010437468,2.97099391,0.003200517,pos,ns,2.494779907,-0.001213362,0.000358944,-3.380370105,0.000816518,neg,ns,0.304498614,Gm28308,Gm28308_fiveUTR,6,52204398,52204447,52204398,52204399,50,-,CGTCTATAGCACCCTTGCACAATTTATGATGAATTATGGAAATGACTGGG,5' UTR,6,52163359,52213339,49981,2,Gm28308-201,8892,Gm28308-201;Hoxa3-201;Hoxa3-203;Hoxa5-201;Hoxa6-201,Gm28308;Hoxa3;Hoxa3;Hoxa5;Hoxa6,0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,21,103,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
18503,cg22198054,-0.0000048,0.00000226,-2.122890339,0.034555262,loss,ns,-0.00000766,0.00000384,-1.994740246,0.046946522,neg,ns,-0.000638416,0.001125258,-0.567350344,0.570886795,neg,ns,0.243450003,-0.00000274,0.0000387,-0.070777049,0.943620835,neg,ns,0.943585123,Otud7b,Otud7b_Exon,3,96141468,96141517,96141516,96141517,50,-,GACTCCATTTCTCATTGCAGAAAAACGCCTGTCTAGGGGCATCTCCCACG,"Exon (Otud7b-204/Otud7b, exon 5 of 5)",3,96104527,96141518,36992,1,Otud7b-204,36941,Otud7b-204;Otud7b-206;Otud7b-201;Otud7b-202;Otud7b-207;Otud7b-203,Otud7b;Otud7b;Otud7b;Otud7b;Otud7b;Otud7b,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,229603,ENSMUSG00000038495,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2880,cg12219231,0.0000158,0.00000275,5.752826674,2.11E-08,gain,yes,-0.00000933,0.00000468,-1.994496559,0.046973266,neg,ns,-0.002249974,0.001371124,-1.640969923,0.101817813,neg,ns,0.992176236,0.0000405,0.0000472,0.859592395,0.390678005,pos,ns,0.075079837,Otx1,Otx1_Promoter,11,22003180,22003229,22003228,22003229,50,+,TGGAGCTGAAAGCGAGCTAATGTTCAAAGAAAGTGGCCGCCAGACCAACG,Promoter (<=1kb),11,21996858,22002897,6040,2,Otx1-202,-283,Ehbp1-201;Ehbp1-202;Ehbp1-207;Otx1-201;Otx1-203;Otx1-202,Ehbp1;Ehbp1;Ehbp1;Otx1;Otx1;Otx1,0;0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,8,13,18423,ENSMUSG00000005917,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
23592,cg24491983,0.00000471,0.00000344,1.369024815,0.171982618,gain,ns,-0.0000117,0.00000585,-1.994333224,0.046991199,neg,ns,0.001167828,0.001713796,0.681427499,0.49610976,pos,ns,0.304422229,-0.000111368,0.0000589,-1.889607045,0.059743462,neg,ns,0.908108408,Cand1,Cand1_Exon,10,119211161,119211210,119211161,119211162,50,-,CGAGTAAGGGCAGCTACACATTTGGCAATGGAATAATAAGACTGCTTATG,"Exon (Cand1-201/Cand1, exon 10 of 15)",10,119199255,119240055,40801,2,Cand1-201,28845,Cand1-201;Cand1-203;Cand1-204,Cand1;Cand1;Cand1,0;-2952;1399,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,71902,ENSMUSG00000020114,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21094,cg01156934,-0.0000201,0.0000078,-2.575785104,0.010464235,loss,ns,0.0000264,0.0000133,1.993930286,0.047035464,pos,ns,-0.006189068,0.003882064,-1.594272616,0.111893991,neg,ns,0.951193236,0.0000472,0.000133504,0.35375694,0.723761517,pos,ns,0.76168811,Barhl2,Barhl2_Intergenic_downstream,5,106443143,106443192,106443191,106443192,50,-,CTAACCTTGTTACCATCCCTTCCTAAATCCATCAGTGTTGCAGCTGCACG,Distal Intergenic,5,106452523,106458166,5644,2,Barhl2-201,15023,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,27,104382,ENSMUSG00000034384,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6016,cg03523528,0.000053,0.00000658,8.049578859,1.79E-14,gain,yes,-0.0000223,0.0000112,-1.993901778,0.047038597,neg,ns,0.002150851,0.003276139,0.656520039,0.511976617,pos,ns,0.290749874,0.000104709,0.000112666,0.9293763,0.353417215,pos,ns,0.786290013,Cxxc5,Cxxc5_Intron,18,35855656,35855705,35855704,35855705,50,+,GGCTCCGCATTGCTGATGAAACGGAGCCCTTTGTTGTCCCTCCTCAGGCG,"Intron (Gm50371-201/Gm50371-201, intron 4 of 4)",18,35829397,35859002,29606,1,Cxxc5-202,26259,Cxxc5-202;Cxxc5-201;Cxxc5-206;Cxxc5-203;Cxxc5-204;Cxxc5-205,Cxxc5;Cxxc5;Cxxc5;Cxxc5;Cxxc5;Cxxc5,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,49,67393,ENSMUSG00000046668,conserved gene and region,18,35855560,35855824,265,*,265,22,0.671698113,0.73685541,0.083018868,2.89E-15,CpGisland,TRUE,U8,En-Pd
613,cg22324740,-0.00000312,0.0000233,-0.133635543,0.893777488,loss,ns,0.000079,0.0000396,1.99356584,0.04707553,pos,ns,0.026528569,0.011614302,2.284129379,0.023039768,pos,ns,1.637521891,-0.000679201,0.000399415,-1.700489796,0.090041731,neg,ns,0.791696611,Rcor2,Rcor2_Exon,19,7274070,7274119,7274118,7274119,50,+,AACAAGACTCTGACCCAGGTGAAGACTTTCTTTGTGAGCTACCGGCGCCG,"Exon (Rcor2-201/Rcor2, exon 11 of 12)",19,7268279,7275225,6947,1,Rcor2-201,5791,Mark2-202;Mark2-206;Mark2-201;Mark2-221;Mark2-209;Mark2-203;Mark2-211;Mark2-207;Mark2-218;Mark2-215;Mark2-212;Mark2-208;Mark2-219;Rcor2-204;Rcor2-201;Rcor2-202;Rcor2-203,Mark2;Mark2;Mark2;Mark2;Mark2;Mark2;Mark2;Mark2;Mark2;Mark2;Mark2;Mark2;Mark2;Rcor2;Rcor2;Rcor2;Rcor2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;3118,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,3,104383,ENSMUSG00000024968,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25601,cg14518990,-0.0000198,0.00000604,-3.270251537,0.001195484,loss,ns,-0.0000205,0.0000103,-1.993425474,0.047090969,neg,ns,-0.006952896,0.003007598,-2.311776995,0.021445252,neg,ns,1.668668852,0.000196912,0.000103431,1.903797274,0.05786242,pos,ns,0.846266223,Wnt4,Wnt4_Intergenic_downstream,4,137306381,137306430,137306429,137306430,50,-,GATTCTGTTTGCTATAAAACAGCCAGACATTCCTAGGACCTGGAATCGCG,Distal Intergenic,4,137277489,137299726,22238,1,Wnt4-201,28941,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,22417,ENSMUSG00000036856,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27136,cg02551506,-0.0000324,0.00000724,-4.47674512,0.0000107,loss,ns,0.0000245,0.0000123,1.993405607,0.047093154,pos,ns,-0.001093937,0.003605188,-0.303434175,0.761762546,neg,ns,0.118180385,-0.00027935,0.000123982,-2.253144273,0.024948826,neg,ns,0.518417278,Dhx35,Dhx35_Intergenic_downstream,2,159107986,159108035,159107986,159107987,50,+,CGAGGTATTGGAGAAAGATCCATCACCCCTGAGTGATCGGTGACCCACAG,Distal Intergenic,2,158850629,158857368,6740,1,Dhx35-204,257357,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,14,14,71715,ENSMUSG00000027655,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5190,cg25210423,-0.0000132,0.00000324,-4.062752423,0.0000615,loss,ns,-0.000011,0.0000055,-1.993272981,0.047107747,neg,ns,-0.001568235,0.001611983,-0.972861008,0.331380876,neg,ns,0.479672559,0.0000469,0.0000554,0.846118441,0.39813932,pos,ns,0.947846236,Fbxw11,Fbxw11_threeUTR,11,32652799,32652848,32652799,32652800,50,+,CGGAAAGAATCTTGGAAGATGCTTGACTGCTGTCTTTTCTCAGACTAGTC,3' UTR,11,32642724,32746569,103846,1,Fbxw11-203,10075,Fbxw11-203;Fbxw11-204;Fbxw11-202;Fbxw11-201;Fbxw11-205,Fbxw11;Fbxw11;Fbxw11;Fbxw11;Fbxw11,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,4,103583,ENSMUSG00000020271,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
23984,cg24420625,-0.000000626,0.00000243,-0.257644496,0.796852229,loss,ns,0.00000823,0.00000413,1.993192891,0.04711656,pos,ns,0.002212972,0.001209487,1.829679069,0.068258215,pos,ns,1.16584507,-0.000048,0.0000416,-1.154377482,0.249234564,neg,ns,0.944824182,Nktr,Nktr_threeUTR,9,121731508,121731557,121731508,121731509,50,-,CGTTCCTTTTATCAATGGCAAATCGAGGGAAACATACCAATGGTTCCCAG,3' UTR,9,121719169,121742718,23550,1,Nktr-214,12339,Nktr-214;Nktr-201;Nktr-212;Nktr-213;Nktr-206;Nktr-216;Nktr-204;Nktr-205;Nktr-207;Nktr-208;Nktr-203,Nktr;Nktr;Nktr;Nktr;Nktr;Nktr;Nktr;Nktr;Nktr;Nktr;Nktr,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,3,18087,ENSMUSG00000032525,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25642,cg24641105,0.000166919,0.000018,9.264485359,3.39E-18,gain,yes,-0.000061,0.0000306,-1.992937631,0.047144661,neg,ns,0.063407307,0.008967307,7.070941669,1.03E-11,pos,yes,10.98915087,-0.001303102,0.000308385,-4.225568104,0.0000314,neg,ns,0.394895946,Mepce,Mepce_Exon,5,137784466,137784515,137784466,137784467,50,-,CGAAGACAACATTGTTGGGGAAGACTGATGTGTCCGCTCCATCCAAGGGC,"Exon (Mepce-201/Mepce, exon 1 of 4)",5,137781906,137786663,4758,2,Mepce-201,2148,Mepce-201;Mepce-202;Mepce-203;Mepce-204;Mepce-205;Ppp1r35-202;Ppp1r35-201;Ppp1r35-204;Ppp1r35-203;Zcwpw1-201,Mepce;Mepce;Mepce;Mepce;Mepce;Ppp1r35;Ppp1r35;Ppp1r35;Ppp1r35;Zcwpw1,0;0;-1116;0;0;5617;5562;5029;4922;-3283,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,2,231803,ENSMUSG00000029726,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
18949,cg21820731,-0.00000641,0.00000329,-1.948392459,0.05227011,loss,ns,-0.0000111,0.00000559,-1.992911049,0.047147588,neg,ns,-0.006682233,0.001636867,-4.0823311,0.0000568,neg,ns,4.245740961,0.0000543,0.0000563,0.964550866,0.335521641,pos,ns,0.923090314,Cacnb1,Cacnb1_Exon,11,98010304,98010353,98010352,98010353,50,-,CCTTGAGCGACGGTCCCACCAGGATGATGGGCCTCATGGAAGGCACCACG,"Exon (Cacnb1-201/Cacnb1, exon 8 of 14)",11,98001508,98022634,21127,2,Cacnb1-201,12281,Cacnb1-201;Cacnb1-203;Cacnb1-204;Cacnb1-202;Cacnb1-205;Cacnb1-207;Cacnb1-206,Cacnb1;Cacnb1;Cacnb1;Cacnb1;Cacnb1;Cacnb1;Cacnb1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,12295,ENSMUSG00000020882,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5852,cg26279957,0.000144341,0.00000842,17.146475,8.15E-47,gain,yes,-0.0000285,0.0000143,-1.992758611,0.047164377,neg,ns,0.014617836,0.004189794,3.488915259,0.000555213,pos,ns,3.255540405,-0.000300069,0.000144087,-2.082557798,0.038111135,neg,ns,0.612974212,Cnot4,Cnot4_Exon,6,35024221,35024270,35024221,35024222,50,+,CGTTGGAGGGGGAAGAAGAATTGGGCAGTCCACCAAAGTTGATGTTAATG,Promoter (<=1kb),6,35022065,35024864,2800,2,Cnot4-205,594,Cnot4-205;Cnot4-206;Cnot4-202;Cnot4-203,Cnot4;Cnot4;Cnot4;Cnot4,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,10,53621,ENSMUSG00000038784,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20559,cg00104779,-0.0000146,0.0000149,-0.975503758,0.330071038,loss,ns,-0.0000505,0.0000254,-1.992128155,0.047233866,neg,ns,-0.026088408,0.007429302,-3.511555846,0.000511664,neg,ns,3.291014723,0.00074886,0.000255493,2.931040335,0.003629449,pos,ns,0.648369943,Gm12716,Gm12716_Intergenic_downstream,4,103497479,103497528,103497479,103497480,50,+,CGTGTGAGTAGGCCGAAAGACCTTTAAGAAAAGACCAATATTTGCATATC,Distal Intergenic,4,103543374,103544727,1354,2,Gm12716-201,47199,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,665451,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8442,cg00225449,0.0000297,0.00000267,11.09608176,2.58E-24,gain,yes,0.00000905,0.00000454,1.991816836,0.047268211,pos,ns,0.00215464,0.001331305,1.618442926,0.106584116,pos,ns,0.972307513,-0.0000149,0.0000458,-0.324808072,0.745545416,neg,ns,0.050504296,Zeb2,Zeb2_Exon,2,45116675,45116724,45116675,45116676,50,+,CGCAATCCAATCCATTCGGAGTTGAGCCTAGGATAGGAGGGGAAAGTCTA,Promoter (<=1kb),2,44983632,45117395,133764,2,Zeb2-212,671,Zeb2-212;Zeb2-213;Zeb2-202;Zeb2-215;Zeb2-203;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-207;Zeb2-205;Zeb2-223;Zeb2-204;Zeb2-206;Zeb2-230,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,21,158,24136,ENSMUSG00000026872,mapped to different genes,2,45116550,45116692,143,*,143,10,0.538461539,0.968834688,0.06993007,0.00000182,CpGisland,TRUE,NA,NRS
13054,cg00674395,0.0000213,0.0000064,3.337343265,0.000948824,gain,ns,-0.0000216,0.0000109,-1.991329375,0.047322032,neg,ns,0.006597362,0.003183183,2.072567591,0.039038749,pos,ns,1.408504108,-0.00038843,0.000109469,-3.548298905,0.000447736,neg,ns,0.784121348,Chd3,Chd3_Exon,11,69346657,69346706,69346705,69346706,50,+,GCGACTCCTTGGAGAGGTGCTGGTGGCTCTCGGCCAGGCACTCGGCCTCG,"Exon (Chd3-203/Chd3, exon 4 of 7)",11,69343273,69348610,5338,2,Chd3-203,1904,Chd3-205;Chd3-203;Chd3-202;Chd3-211;Chd3-201;Chd3-204;Chd3-208;Rnf227-201;Rnf227-203,Chd3;Chd3;Chd3;Chd3;Chd3;Chd3;Chd3;Rnf227;Rnf227,0;0;0;0;0;0;0;6196;5886,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,22,26,216848,ENSMUSG00000018474,conserved gene but different region,11,69346504,69346858,355,*,355,27,0.676056338,0.691010021,0.076056338,1.34E-17,CpGisland,TRUE,U10,Tr-S
20829,cg16987247,0.0000807,0.0000056,14.41780066,2.04E-36,gain,yes,-0.0000189,0.00000951,-1.991178381,0.047338713,neg,ns,-0.004943287,0.002787296,-1.773506495,0.077126527,neg,ns,1.112796225,-0.0000931,0.0000959,-0.971577531,0.332018228,neg,ns,0.770402224,Apbb1,Apbb1_fiveUTR,7,105569327,105569376,105569327,105569328,50,-,CGTTACCAGGGAAACCAGGAATCCTGACTGGTCCAAGAGGCAGTACTAAG,5' UTR,7,105558483,105581653,23171,2,Apbb1-217,12277,Apbb1-217;Apbb1-209;Apbb1-215;Apbb1-212;Apbb1-219;Apbb1-201;Apbb1-208;Apbb1-214;Apbb1-213;Apbb1-205;Apbb1-221;Apbb1-218;Apbb1-202;Apbb1-210;Apbb1-207;Apbb1-206;Apbb1-220;Apbb1-204;Apbb1-203;Apbb1-216;Apbb1-211,Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1,0;0;0;0;0;0;0;0;0;0;0;-3822;0;0;-364;-62;-56;-54;0;-657;11812,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,6,8,11785,ENSMUSG00000037032,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4894,cg12886580,0.000016,0.0000126,1.26742908,0.205953137,gain,ns,0.0000427,0.0000214,1.991142708,0.047342655,pos,ns,0.005922452,0.006283091,0.942601535,0.346618747,pos,ns,0.460147952,0.0000073,0.000216075,0.033780464,0.973073954,pos,ns,0.710876258,Zfp513,Zfp513_Exon,5,31200357,31200406,31200357,31200358,50,-,CGCTGATGCCGCCTCAGGTTGCCCAGGCTGCTGCAGGCAAAGGGGCAGTG,"Exon (Zfp513-202/Zfp513, exon 3 of 4)",5,31198981,31202303,3323,2,Zfp513-202,1897,Ppm1g-205;Ppm1g-201;Ppm1g-206;Ppm1g-203;Ppm1g-204;Snx17-201;Snx17-205;Snx17-202;Snx17-204;Snx17-210;Snx17-208;Snx17-207;Snx17-211;Snx17-209;Snx17-206;Snx17-203;Zfp513-202;Zfp513-201;Zfp513-205;Zfp513-207;Zfp513-203;Zfp513-204;Zfp513-208;Zfp513-206,Ppm1g;Ppm1g;Ppm1g;Ppm1g;Ppm1g;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Zfp513;Zfp513;Zfp513;Zfp513;Zfp513;Zfp513;Zfp513;Zfp513,0;0;4677;0;0;0;0;0;0;0;0;0;5514;0;0;0;0;0;0;-71;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,15,15,101023,ENSMUSG00000043059,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7718,cg24498686,-1.13E-09,0.00000108,-0.001043923,0.999167742,loss,ns,0.00000365,0.00000183,1.990916492,0.047367659,pos,ns,0.000257221,0.000536584,0.479366986,0.632015567,pos,ns,0.199272224,-0.000022,0.0000185,-1.192535123,0.233963494,neg,ns,0.97697584,Arhgap15,Arhgap15_Intron,2,43978742,43978791,43978742,43978743,50,-,CGTGATTCGTCGCTAAATGTATAGAATCAGCTTCTTGCTAAAAACTACAA,"Intron (Arhgap15-203/Arhgap15, intron 6 of 14)",2,43748824,44395953,647130,1,Arhgap15-203,229918,Arhgap15-203;Arhgap15-202;Arhgap15-201,Arhgap15;Arhgap15;Arhgap15,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,72,78,76117,ENSMUSG00000049744,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23930,cg11978813,-0.00000203,0.00000473,-0.429153601,0.668109538,loss,ns,0.000016,0.00000803,1.990879015,0.047371802,pos,ns,0.005082121,0.002353539,2.159353394,0.031589485,pos,ns,1.500457458,-0.000175561,0.0000809,-2.169085093,0.03083604,neg,ns,0.895965858,Trp53bp1,Trp53bp1_threeUTR,2,121200346,121200395,121200346,121200347,50,+,CGAAGCTGGGATTCTGTATACTGCTTGTTGAAAGGAGGAATTTCCAAAAA,3' UTR,2,121193281,121211975,18695,2,Trp53bp1-211,11580,Trp53bp1-211;Trp53bp1-201;Trp53bp1-202;Trp53bp1-216;Trp53bp1-217;Trp53bp1-218;Trp53bp1-210;Tubgcp4-203;Tubgcp4-208;Tubgcp4-215;Tubgcp4-201;Tubgcp4-211;Tubgcp4-209;Tubgcp4-213,Trp53bp1;Trp53bp1;Trp53bp1;Trp53bp1;Trp53bp1;Trp53bp1;Trp53bp1;Tubgcp4;Tubgcp4;Tubgcp4;Tubgcp4;Tubgcp4;Tubgcp4;Tubgcp4,0;0;0;0;0;7367;0;0;0;0;0;0;12987;8399,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,5,27223,ENSMUSG00000043909,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
511,cg26774146,0.0000956,0.0000179,5.328956584,0.00000019,gain,yes,-0.0000607,0.0000305,-1.990552825,0.047407877,neg,ns,-0.000862274,0.008932852,-0.096528449,0.923163254,neg,ns,0.034721491,0.000700071,0.0003072,2.278877872,0.023354063,pos,ns,0.194838381,Celf2,Celf2_Exon,2,6721456,6721505,6721456,6721457,50,-,CGTTGATCTGGTAGACGGCTCCGTAAGGCTCAAAAAGTTCTTTCAGCTCC,"Exon (Celf2-201/Celf2, exon 4 of 16)",2,6539694,7396000,856307,2,Celf2-201,674495,Celf2-201;Celf2-202;Celf2-204;Celf2-214;Celf2-206;Celf2-226;Celf2-223;Celf2-224;Celf2-221;Celf2-205;Celf2-211;Celf2-213;Celf2-225;Celf2-228;Celf2-217;Celf2-227;Celf2-210;Celf2-209;Celf2-219;Celf2-208;Celf2-207;Celf2-218;Celf2-203;Celf2-220,Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,24,14007,ENSMUSG00000002107,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
7487,cg27659622,-0.0000671,0.0000156,-4.29099924,0.0000238,loss,ns,0.0000529,0.0000266,1.99045816,0.047418351,pos,ns,-0.00986023,0.007779978,-1.267385331,0.205968752,neg,ns,0.686198663,0.000348244,0.000267553,1.30159075,0.194022746,pos,ns,0.717822137,Scml4,Scml4_fiveUTR,10,42860633,42860682,42860633,42860634,50,-,CGAGTTTTCTGCCTGTGCTGAATGCATTAGTCTAATGAGATGTTTGCAGC,Promoter (<=1kb),10,42860667,42934361,73695,1,Scml4-203,0,Scml4-201;Scml4-209;Scml4-203;Scml4-202;Scml4-207,Scml4;Scml4;Scml4;Scml4;Scml4,0;0;0;-111;-4832,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,4,268297,ENSMUSG00000044770,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
17181,cg16351879,-0.00000236,0.00000193,-1.224045572,0.221864501,loss,ns,-0.00000651,0.00000327,-1.990312663,0.047434453,neg,ns,-0.000930536,0.000958596,-0.970728813,0.332440123,neg,ns,0.478286566,-0.0000433,0.000033,-1.314545546,0.1896344,neg,ns,0.940048352,Slc4a4,Slc4a4_Exon,5,89057958,89058007,89057958,89057959,50,+,CGCTTGAGAACTCAGTGCCCTGCCTAGCAACCCGCACCTTGGATGATGAC,"Exon (Slc4a4-210/Slc4a4, exon 7 of 26)",5,88886486,89234876,348391,1,Slc4a4-210,171472,Slc4a4-210;Slc4a4-207;Slc4a4-202;Slc4a4-208;Slc4a4-203;Slc4a4-204,Slc4a4;Slc4a4;Slc4a4;Slc4a4;Slc4a4;Slc4a4,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,54403,ENSMUSG00000060961,conserved gene but different region,5,89057940,89058032,93,*,93,9,0.634408602,0.996428571,0.096774194,0.000000492,CpGisland,TRUE,NA,NRS
9120,cg17956843,0.0000646,0.000013,4.955914622,0.00000119,gain,yes,0.000044,0.0000221,1.990095114,0.047458538,pos,ns,0.026967297,0.006484506,4.158728142,0.0000415,pos,ns,4.382243627,-0.000620605,0.000223002,-2.782961491,0.005717005,neg,ns,0.376824036,Samd4,Samd4_fiveUTR,14,47016317,47016366,47016365,47016366,50,+,GATTTCCCTCCTGTTAACTCATCTGCCTTTGCTGAAGCCAGGAAACCTCG,5' UTR,14,46882854,47103150,220297,1,Samd4-201,133463,Samd4-201;Samd4-211;Samd4-202;Samd4-206;Samd4-203,Samd4;Samd4;Samd4;Samd4;Samd4,0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,16,74480,ENSMUSG00000021838,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2354,cg15412759,0.0000731,0.00000701,10.43058115,4.96E-22,gain,yes,-0.0000237,0.0000119,-1.990008129,0.047468171,neg,ns,0.008772379,0.003487305,2.515518419,0.012391057,pos,ns,1.906891643,-0.00024569,0.000119928,-2.048641191,0.041339008,neg,ns,0.079141631,Tfap2d,Tfap2d_Exon,1,19104748,19104797,19104748,19104749,50,+,CGCCATGACCTGTCCCTCATGAGCCATGGCTCTCAGTATGGAATGCACCC,"Exon (Tfap2d-201/Tfap2d, exon 2 of 8)",1,19103022,19166346,63325,1,Tfap2d-201,1726,Tfap2d-201;Tfap2d-202,Tfap2d;Tfap2d,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,14,23,226896,ENSMUSG00000042596,conserved gene and region,1,19104477,19104754,278,*,278,20,0.615107914,0.848336894,0.071942446,1.04E-12,CpGisland,TRUE,U13,Hc-P
1397,cg22493714,-0.0000588,0.0000134,-4.399745364,0.0000149,loss,ns,-0.0000452,0.0000227,-1.989973848,0.047471968,neg,ns,0.004852424,0.006650429,0.729640776,0.466160744,pos,ns,0.331464302,-0.000903202,0.000228708,-3.949154333,0.0000971,neg,ns,0.56251977,Rpl36-ps3,Rpl36-ps3_Intergenic_upstream,12,12676885,12676934,12676885,12676886,50,-,CGGCTTTGGCAGGCTGCACCACTGTCAGCGGGCCAGAAGTTAATTCCCTC,Distal Intergenic,12,12912022,12912336,315,1,Rpl36-ps3-201,-235137,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,19,20,100043215,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19324,cg02878926,0.000107438,0.0000136,7.89933157,4.92E-14,gain,yes,-0.000046,0.0000231,-1.989724556,0.047499585,neg,ns,0.03351335,0.006769304,4.950781922,0.00000122,pos,ns,5.915067667,0.000223576,0.000232796,0.960394897,0.337604975,pos,ns,0.848092766,Foxp1,Foxp1_Exon,6,99003402,99003451,99003450,99003451,50,+,TGCCTGAAACAAACAAATTGGATAATTAAATCAATTAACAGCTAATTCCG,"Exon (Foxp1-206/Foxp1, exon 8 of 18)",6,98925338,99266515,341178,2,Foxp1-206,263064,Foxp1-206;Foxp1-204;Foxp1-220;Foxp1-230;Foxp1-225;Foxp1-201;Foxp1-205;Foxp1-207;Foxp1-208;Foxp1-226;Foxp1-228;Foxp1-221;Foxp1-222;Foxp1-210;Foxp1-213;Foxp1-214;Foxp1-209;Foxp1-203,Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,87,108655,ENSMUSG00000030067,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16262,cg09721112,0.000000794,0.00000324,0.245286573,0.806396847,gain,ns,0.0000109,0.0000055,1.9897215,0.047499924,pos,ns,-0.000586197,0.001611835,-0.363683357,0.716342371,neg,ns,0.14487936,-0.0000312,0.0000554,-0.562441793,0.574221533,neg,ns,0.921597271,Polr3b,Polr3b_Intron,10,84686135,84686184,84686183,84686184,50,-,TCCTGCACATTTAGCTCCTTGGATACAATCCTCTGACGTTACTGCTGACG,"Intron (Polr3b-201/Polr3b, intron 19 of 27)",10,84622292,84727178,104887,1,Polr3b-201,63843,Polr3b-201,Polr3b,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,5,70428,ENSMUSG00000034453,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18823,cg06941198,0.0000387,0.00000598,6.479689916,3.61E-10,gain,yes,-0.0000202,0.0000102,-1.989683027,0.047504188,neg,ns,-0.000652165,0.00297552,-0.219176669,0.826656666,neg,ns,0.082674828,0.0000371,0.000102328,0.362267671,0.71739885,pos,ns,0.762500385,E130114P18Rik,E130114P18Rik_Intron,4,97582018,97582067,97582018,97582019,50,+,CGGCTCCATCAAATGGCAGCTCTGCTACGACATCTCGGCCAGAACTTGGT,"Intron (E130114P18Rik-207/E130114P18Rik, intron 1 of 4)",4,97568133,97584596,16464,2,E130114P18Rik-207,2529,E130114P18Rik-207;E130114P18Rik-201;E130114P18Rik-203;E130114P18Rik-202;E130114P18Rik-206;E130114P18Rik-204;E130114P18Rik-209;E130114P18Rik-208,E130114P18Rik;E130114P18Rik;E130114P18Rik;E130114P18Rik;E130114P18Rik;E130114P18Rik;E130114P18Rik;E130114P18Rik,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,24,319865,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9814,cg25615319,0.0000155,0.0000117,1.321168417,0.187419541,gain,ns,0.0000396,0.0000199,1.989576196,0.047516028,pos,ns,0.011860254,0.005829992,2.034351563,0.042767066,pos,ns,1.368890542,-0.000441453,0.000200493,-2.201837116,0.028413109,neg,ns,0.531583893,Trps1,Trps1_Intron,15,50929581,50929630,50929581,50929582,50,+,CGTTTGCCTGTCTCAGTGGATTGAACCTCAAAGACTCCTTTGACGCAAGT,"Intron (Gm48913-201/Gm48913-201, intron 3 of 3)",15,50846176,50890463,44288,2,Trps1-208,-39118,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,36,83925,ENSMUSG00000038679,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18343,cg19123351,-0.00000422,0.00000567,-0.743974534,0.457455413,loss,ns,0.0000191,0.00000963,1.989375639,0.047538263,pos,ns,0.010535104,0.002819993,3.735861701,0.000222637,pos,ns,3.652403372,-0.000338421,0.000097,-3.489617587,0.000553811,neg,ns,0.872307271,Dok4,Dok4_threeUTR,8,94863871,94863920,94863919,94863920,50,+,AAAGTGTTTATTTTTGGCAATAAAGAGCACAACATAATCTCCTTCATGCG,3' UTR,8,94863828,94871204,7377,2,Dok4-204,7284,Dok4-204;Dok4-201;Dok4-202;Polr2c-201;Polr2c-206;Polr2c-202;Polr2c-204;Polr2c-205;Polr2c-203;Polr2c-207,Dok4;Dok4;Dok4;Polr2c;Polr2c;Polr2c;Polr2c;Polr2c;Polr2c;Polr2c,0;0;7796;0;6370;0;6288;6239;2486;2155,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,1,114255,ENSMUSG00000040631,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14294,cg27543103,0.00000703,0.00000369,1.904729411,0.057740608,gain,ns,0.0000125,0.00000627,1.989311648,0.04754536,pos,ns,0.004580888,0.001835709,2.495432213,0.013100093,pos,ns,1.88272562,-0.0000565,0.0000631,-0.894283527,0.371863987,neg,ns,0.062857107,Gsx2,Gsx2_Intergenic_downstream,5,75085353,75085402,75085353,75085354,50,-,CGAGGTACTCTGCATGACAAAGCACAATTAAGCTTTCTATTCAGGAGTTC,Distal Intergenic,5,75075602,75077625,2024,1,Gsx2-202,9800,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,10,14843,ENSMUSG00000035946,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
5830,cg15594409,0.0000137,0.00000401,3.424234217,0.000699499,gain,ns,-0.0000135,0.00000681,-1.989274416,0.047549489,neg,ns,-0.000379449,0.001993981,-0.190297212,0.849200792,neg,ns,0.07098961,-0.000213244,0.0000686,-3.109738796,0.002046452,neg,ns,0.845172997,Mylk,Mylk_Exon,16,34914961,34915010,34915009,34915010,50,-,TGAGGACGTGTTCACCCTGGTTCTAAAGAAGGTGCAGCCCTGGCATGCCG,"Exon (Mylk-201/Mylk, exon 14 of 32)",16,34784921,35002420,217500,1,Mylk-201,130040,Mylk-201;Mylk-207;Mylk-208,Mylk;Mylk;Mylk,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,7,107589,ENSMUSG00000022836,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11145,cg11396925,-0.00000266,0.00000311,-0.855002774,0.393209907,loss,ns,0.0000105,0.00000529,1.989190093,0.047558842,pos,ns,0.003530193,0.001549205,2.278712309,0.023364032,pos,ns,1.631452203,-0.0000497,0.0000533,-0.933232908,0.351426021,neg,ns,0.942990087,Lingo1,Lingo1_Intron,9,56746355,56746404,56746355,56746356,50,+,CGGGCACAACAGTAATTAACGTCTCATTAACATTCGCCTAATTAAGCAGT,"Intron (Lingo1-206/Lingo1, intron 2 of 6)",9,56618475,56796138,177664,2,Lingo1-206,49734,Lingo1-206;Lingo1-205;Lingo1-207;Lingo1-204;Lingo1-208,Lingo1;Lingo1;Lingo1;Lingo1;Lingo1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,25,235402,ENSMUSG00000049556,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14238,cg01928647,0.0000833,0.0000174,4.780134026,0.00000271,gain,ns,-0.0000589,0.0000296,-1.989039773,0.04757552,neg,ns,-0.003063248,0.008675168,-0.353105344,0.724249452,neg,ns,0.140111825,0.000127064,0.000298338,0.425907127,0.670471075,pos,ns,0.621794781,Sgsm2,Sgsm2_Exon,11,74863596,74863645,74863644,74863645,50,+,AGATCATTGAGAGCATCGCGTGCAGTTTATCCTCCTCTTCCTCATCATCG,"Exon (Sgsm2-202/Sgsm2, exon 12 of 24)",11,74849261,74897060,47800,2,Sgsm2-201,33415,Sgsm2-201;Sgsm2-202;Sgsm2-203;Sgsm2-205;Sgsm2-204,Sgsm2;Sgsm2;Sgsm2;Sgsm2;Sgsm2,0;0;-3021;5447;4743,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,97761,ENSMUSG00000038351,conserved gene and region,11,74863567,74863670,104,*,104,10,0.596153846,1.082206035,0.096153846,0.000000092,CpGisland,TRUE,U11,Tr-P
16964,cg08774648,-0.00000158,0.00000422,-0.374849287,0.708028867,loss,ns,0.0000143,0.00000717,1.988946401,0.047585881,pos,ns,0.004079052,0.002100969,1.941509634,0.05310238,pos,ns,1.274886013,-0.000116557,0.0000723,-1.613195219,0.10771957,neg,ns,0.106591498,Zfp423,Zfp423_Intron,8,87708126,87708175,87708174,87708175,50,+,GCATCTCCAGCTGTTCCAGTTAACCTGCAAATGTGGCCATCTGCACCTCG,"Intron (Zfp423-203/Zfp423, intron 3 of 5)",8,87661810,87804439,142630,2,Zfp423-203,96264,Zfp423-203;Zfp423-202;Zfp423-201,Zfp423;Zfp423;Zfp423,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,42,53,94187,ENSMUSG00000045333,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20204,cg02097817,0.000118705,0.00000864,13.73329226,7.48E-34,gain,yes,-0.0000292,0.0000147,-1.988945247,0.047586009,neg,ns,0.008491902,0.004302016,1.973935519,0.049276653,pos,ns,1.307358801,-0.000106603,0.000147946,-0.72055224,0.471728028,neg,ns,0.058456326,Unc79,Unc79_fiveUTR,12,102949367,102949416,102949367,102949368,50,-,CGGGACCGAATTCTGCAATTTGATGTGCGTTTTGTCCGAATGGTAGCGAC,Promoter (<=1kb),12,102948859,103184001,235143,1,Unc79-202,508,Unc79-202;Unc79-208,Unc79;Unc79,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,12,24,217843,ENSMUSG00000021198,conserved gene and region,12,102948810,102949512,703,*,703,59,0.644381223,0.809149434,0.083926031,2.91E-40,CpGisland,TRUE,NA,NRS
7524,cg04368794,-0.000017,0.000003,-5.648059016,3.67E-08,loss,yes,-0.0000102,0.0000051,-1.98886916,0.047594454,neg,ns,-0.000604611,0.00149547,-0.404294867,0.686274686,neg,ns,0.163502021,-0.0000389,0.0000514,-0.757301965,0.449444199,neg,ns,0.948089786,Vcp,Vcp_Exon,4,42993793,42993842,42993793,42993794,50,-,CGTTTGCCGTACTTCACATCAGGGCATGGCTGGATGCTGAGGATGACAAG,"Exon (Vcp-201/Vcp, exon 4 of 17)",4,42979963,43000507,20545,2,Vcp-201,6665,Vcp-201;Vcp-204;Vcp-202;Vcp-203,Vcp;Vcp;Vcp;Vcp,0;-4463;-35;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,269523,ENSMUSG00000028452,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2014,cg11873881,0.00000808,0.0000128,0.63144282,0.528216349,gain,ns,0.0000433,0.0000218,1.988865446,0.047594867,pos,ns,0.004504505,0.006372524,0.706863575,0.480182242,pos,ns,0.318593905,-0.000463406,0.000219151,-2.114555267,0.035265822,neg,ns,0.505500481,Gdap1,Gdap1_Exon,1,17146939,17146988,17146939,17146940,50,+,CGCTTGGTAATTGCTGAAAAGGCATTGAAGTGCGAGGAACATGATGTAAG,"Exon (Gdap1-201/Gdap1, exon 2 of 6)",1,17145362,17164271,18910,1,Gdap1-201,1577,Gdap1-201;Gdap1-202;Gdap1-204,Gdap1;Gdap1;Gdap1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,14545,ENSMUSG00000025777,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17779,cg08611767,-0.0000057,0.00000188,-3.035206636,0.002607409,loss,ns,-0.00000634,0.00000319,-1.988798626,0.047602284,neg,ns,-0.001004876,0.000933902,-1.075996679,0.282765427,neg,ns,0.548573692,-0.0000203,0.0000321,-0.630960036,0.528531562,neg,ns,0.957518027,Son,Son_threeUTR,16,91662728,91662777,91662728,91662729,50,+,CGCATCAACATTTCGGGTTTTGGCTGTTTGGTACCAGCCATTGGCGATAA,3' UTR,16,91647506,91679207,31702,1,Son-203,15222,Son-203;Son-204;Son-202;Son-208;Son-201;Son-205;Son-212;Son-207,Son;Son;Son;Son;Son;Son;Son;Son,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,14,31,20658,ENSMUSG00000022961,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11622,cg21508805,0.0000573,0.00000539,10.63387016,1.01E-22,gain,yes,-0.0000182,0.00000915,-1.988544831,0.047630466,neg,ns,0.004715175,0.002681863,1.758171418,0.079705153,pos,ns,1.098513599,-0.0000101,0.0000922,-0.108988829,0.913281864,neg,ns,0.069731948,Emx2,Emx2_Intergenic_downstream,19,59467291,59467340,59467339,59467340,50,+,GCAGAGGCGGCTCGCCTTGATCCACTGCAAACAAATTTGGCGCACTTTCG,Distal Intergenic,19,59462802,59464215,1414,1,Emx2-203,4489,Emx2-201;Emx2-202;Emx2-203,Emx2;Emx2;Emx2,0;7772;4489,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,15,23,13797,ENSMUSG00000043969,mapped to different genes,19,59467121,59467392,272,*,272,18,0.525735294,0.993103448,0.066176471,7.09E-11,CpGisland,TRUE,U13,Hc-P
7050,cg13769268,-0.00000281,0.00000478,-0.588459076,0.556652684,loss,ns,0.0000161,0.00000812,1.988486639,0.04763693,pos,ns,0.004612898,0.002379009,1.939000197,0.053408576,pos,ns,1.272389003,-0.000117068,0.0000818,-1.430901179,0.153465798,neg,ns,0.086721942,Tfap2a,Tfap2a_Intron,13,40719821,40719870,40719821,40719822,50,-,CGAATCTTTGGTTTTAATTTCCTGAACCAGTTGGTTTTTACTGCAGGGCT,"Intron (Tfap2a-201/Tfap2a, intron 5 of 6)",13,40715302,40730443,15142,2,Tfap2a-201,10573,Tfap2a-201;Tfap2a-202;Tfap2a-205;Tfap2a-203;Tfap2a-209;Tfap2a-208;Tfap2a-206;Tfap2a-204,Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,57,21418,ENSMUSG00000021359,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
14646,cg10094382,-0.0000189,0.00000355,-5.340614078,0.00000018,loss,yes,0.000012,0.00000602,1.988309185,0.047656646,pos,ns,0.002132799,0.001765095,1.208319575,0.227845281,pos,ns,0.642359962,-0.0000141,0.0000607,-0.232712966,0.816137868,neg,ns,0.938413985,Rbfox2,Rbfox2_Intron,15,77089430,77089479,77089430,77089431,50,+,CGGTGAAGTACACAGCCTCAATTACTAGAGCGTGCAGCCACAACGACCTG,"Intron (1700109K24Rik-202/1700109K24Rik-202, intron 1 of 1)",15,77078990,77306928,227939,2,Rbfox2-204,217449,Rbfox2-204;Rbfox2-203;Rbfox2-202;Rbfox2-206;Rbfox2-208;Rbfox2-209;Rbfox2-201;Rbfox2-211;Rbfox2-215;Rbfox2-207,Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,20,93686,ENSMUSG00000033565,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11749,cg09667381,-0.0000385,0.0000112,-3.444240901,0.000651502,loss,ns,0.0000378,0.000019,1.988146537,0.047674723,pos,ns,-0.004197278,0.005565857,-0.754111633,0.451354619,neg,ns,0.345482109,-0.000178064,0.000191409,-0.930279515,0.352950237,neg,ns,0.748792768,Abi2,Abi2_Exon,1,60447276,60447325,60447276,60447277,50,+,CGCACACTGGAGCCAGTGCGTCCTCCAGTGGTACCAAATGATTACGTACC,"Exon (Abi2-201/Abi2, exon 5 of 9)",1,60409619,60481158,71540,1,Abi2-201,37657,Abi2-201;Abi2-206;Abi2-207;Abi2-210;Abi2-212;Abi2-208;Abi2-205;Abi2-202;Abi2-204;Abi2-203;Abi2-211,Abi2;Abi2;Abi2;Abi2;Abi2;Abi2;Abi2;Abi2;Abi2;Abi2;Abi2,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,9,329165,ENSMUSG00000026782,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21415,cg12789027,-0.00000375,0.00000265,-1.414615586,0.158184858,loss,ns,0.00000895,0.0000045,1.987953599,0.047696173,pos,ns,0.002535163,0.001318308,1.923043481,0.055390431,pos,ns,1.256565253,-0.0000683,0.0000453,-1.505570709,0.133195634,neg,ns,0.94996066,Zswim6,Zswim6_threeUTR,13,107725836,107725885,107725884,107725885,50,-,CCTGAGAATGTATGTTGACAGTCGCTAAGTTTCCACATGCACAAGCATCG,3' UTR,13,107724617,107890064,165448,2,Zswim6-204,164179,Zswim6-204;Zswim6-201;Zswim6-203;Zswim6-202,Zswim6;Zswim6;Zswim6;Zswim6,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,26,67263,ENSMUSG00000032846,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10519,cg19219102,-0.0000156,0.00000411,-3.810315247,0.000167368,loss,ns,0.0000139,0.00000698,1.987786268,0.047714784,pos,ns,0.002836928,0.002044231,1.387773024,0.166202835,pos,ns,0.779361572,-0.000150989,0.0000703,-2.147759268,0.032507784,neg,ns,0.925157041,Npas3,Npas3_Intron,12,53964578,53964627,53964578,53964579,50,-,CGACTTTGGCTTATAAAACTTTAATTTTGTGAGTTGGTAGCACTCCAATA,"Intron (Npas3-204/Npas3, intron 5 of 10)",12,53248157,54069532,821376,1,Npas3-204,716421,Npas3-204;Npas3-201;Npas3-203,Npas3;Npas3;Npas3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,83,103,27386,ENSMUSG00000021010,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3797,cg08003800,-0.00000884,0.00000423,-2.092628479,0.037195176,loss,ns,0.0000143,0.00000718,1.987741768,0.047719734,pos,ns,0.000314239,0.002103533,0.149386276,0.881345979,pos,ns,0.054853573,-0.000108673,0.0000723,-1.50224457,0.134051892,neg,ns,0.917841069,5730522E02Rik,5730522E02Rik_Intergenic_downstream,11,25470145,25470194,25470145,25470146,50,-,CGGGGCTTTATTGAAAGATCATACAGGATGACTGCAAAATCCCATTACTT,Distal Intergenic,11,25602816,25620098,17283,2,5730522E02Rik-205,149953,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,21,90,70626,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18206,cg27664365,-0.0000155,0.00000714,-2.16571378,0.031095279,loss,ns,0.0000241,0.0000121,1.987399987,0.047757769,pos,ns,0.00309423,0.003551491,0.871248265,0.384292825,pos,ns,0.415337724,-0.000160715,0.000122135,-1.315871781,0.189189328,neg,ns,0.611779427,Celf3,Celf3_fiveUTR,3,94479187,94479236,94479187,94479188,50,+,CGAACAGTTTGGTCGGATCTTTGAGCTGACTGTCATCAAGGACAAGTACA,Promoter (<=1kb),3,94478295,94485318,7024,1,Celf3-214,892,Celf3-214;Celf3-208;Celf3-204;Celf3-215;Celf3-201;Celf3-213;Celf3-212;Celf3-207;Celf3-206;Riiad1-202,Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Riiad1,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,12,78784,ENSMUSG00000028137,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
16780,cg20189900,-0.00000234,0.00000117,-1.992339343,0.047210579,loss,ns,0.00000397,0.000002,1.987279513,0.047771182,pos,ns,0.001216262,0.000584595,2.080520955,0.038298717,pos,ns,1.416815774,-0.0000178,0.0000201,-0.884415649,0.377157301,neg,ns,0.031874945,Pcbp1,Pcbp1_Exon,6,86525409,86525458,86525409,86525410,50,-,CGTCTCCAGCATGACCAGGCAAATCTGCTTGACACACTCGGTGACAGACT,Promoter (<=1kb),6,86524492,86526321,1830,2,Pcbp1-201,863,Pcbp1-201,Pcbp1,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,14,15,23983,ENSMUSG00000051695,mapped to different genes,6,86525220,86525644,425,*,425,38,0.665882353,0.811965812,0.089411765,3.12E-27,CpGisland,TRUE,U1,Pr-A
10396,cg18047531,0.00000599,0.00000219,2.735266297,0.00659189,gain,ns,-0.00000739,0.00000372,-1.987201654,0.047779852,neg,ns,0.000649373,0.001089545,0.596003713,0.55160766,pos,ns,0.258369711,-0.0000226,0.0000375,-0.603661517,0.546510158,neg,ns,0.063956515,Ext1,Ext1_Exon,15,53345020,53345069,53345068,53345069,50,+,TTGAAGCCGTTTTTCTTGCAAAGGGTGAAATCGAAGCAGGACTCCATGCG,"Exon (Ext1-201/Ext1, exon 1 of 11)",15,53064038,53346159,282122,2,Ext1-201,1090,Ext1-201;Ext1-203,Ext1;Ext1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,16,14042,ENSMUSG00000061731,conserved gene and region,15,53344911,53345348,438,*,438,28,0.552511416,0.841325376,0.063926941,3.40E-16,CpGisland,TRUE,NA,NRS
16840,cg09783341,0.0000657,0.0000101,6.49083284,3.38E-10,gain,yes,-0.0000342,0.0000172,-1.987180112,0.047782251,neg,ns,-0.00871626,0.005035272,-1.731040422,0.084439546,neg,ns,1.073454111,0.000279967,0.000173163,1.616789596,0.106940816,pos,ns,0.724127618,Lrba,Lrba_threeUTR,3,86745995,86746044,86746043,86746044,50,+,TGGAATGCAATGAGCTGTGGCTATGCTGGTATTTCATCAACTCCCCCTCG,3' UTR,3,86224680,86746712,522033,1,Lrba-202,521315,Lrba-202;Lrba-204;Lrba-201;Lrba-206,Lrba;Lrba;Lrba;Lrba,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,45,80877,ENSMUSG00000028080,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24861,cg09155589,-0.000000618,0.000000865,-0.714250106,0.475609993,loss,ns,0.00000292,0.00000147,1.987085338,0.047792807,pos,ns,0.0003933,0.000430415,0.913768537,0.361548622,pos,ns,0.441833289,-0.00000647,0.0000148,-0.437270985,0.662219295,neg,ns,0.02429675,Zc3h6,Zc3h6_fiveUTR,2,128967785,128967834,128967785,128967786,50,-,CGCCCCGTTCTTGACCAAACATGACAGACTCTGAACATGCAGGGCACGAC,Promoter (<=1kb),2,128967402,129018563,51162,1,Zc3h6-202,383,Zc3h6-202;Zc3h6-201,Zc3h6;Zc3h6,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,7,8,78751,ENSMUSG00000042851,conserved gene and region,2,128967149,128967791,643,*,643,69,0.6718507,0.959162055,0.107309487,8.30E-55,CpGisland,TRUE,U1,Pr-A
6176,cg20205755,-0.00000184,0.00000172,-1.071245144,0.284892511,loss,ns,0.0000058,0.00000292,1.98674475,0.047830758,pos,ns,-0.000177462,0.000855162,-0.207518645,0.835741089,neg,ns,0.077928246,0.0000255,0.0000294,0.867712883,0.386222724,pos,ns,0.96142415,Gm9211,Gm9211_Intergenic_downstream,7,36239128,36239177,36239176,36239177,50,-,AATGCAATTAGCTATTTACACGATAGCCCATAATGAATCCAAAGGCATCG,Distal Intergenic,7,36234292,36235266,975,1,Gm9211-201,4885,Gm9211-201,Gm9211,4836,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,12,15,668507,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1876,cg01358290,-0.00000579,0.00000262,-2.213335706,0.027602457,loss,ns,0.00000883,0.00000444,1.986682208,0.047837729,pos,ns,-0.000799134,0.001302194,-0.613682632,0.539875106,neg,ns,0.267706697,0.0000997,0.0000448,2.226486219,0.026699985,pos,ns,0.932696043,Mdfic,Mdfic_Intergenic_downstream,6,15824113,15824162,15824161,15824162,50,-,CTGGGCTCCCTCTGATCTTGTGATGTTAAACACACTGCTGTCTTCCCTCG,Distal Intergenic,6,15727799,15770349,42551,1,Mdfic-204,96363,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,3,16543,ENSMUSG00000041390,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6382,cg14998177,-0.000139526,0.0000457,-3.050007301,0.002485871,loss,ns,0.000154384,0.0000777,1.986503418,0.047857664,pos,ns,-0.065771184,0.022768291,-2.888718572,0.004140571,neg,ns,2.382939752,0.002949928,0.000783,3.767470856,0.000197345,pos,ns,0.68275081,Tenm2,Tenm2_Intron,11,37071198,37071247,37071246,37071247,50,+,TAGCCAAATTATCTCAGTGCCCAACTTGTAAGAGGCTGCAATAATACTCG,"Intron (Tenm2-202/Tenm2, intron 2 of 30)",11,36006656,37235882,1229227,2,Tenm2-202,164635,Tenm2-202;Tenm2-207,Tenm2;Tenm2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,47,84,23964,ENSMUSG00000049336,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15413,cg12334548,-0.00000231,0.00000227,-1.015800934,0.31051633,loss,ns,0.00000767,0.00000386,1.986172463,0.047894584,pos,ns,0.003091806,0.00113083,2.734103227,0.00661466,pos,ns,2.179492487,-0.0000897,0.0000389,-2.306803397,0.021724763,neg,ns,0.944298273,Atp9b,Atp9b_Intron,18,80819632,80819681,80819632,80819633,50,-,CGAAAAGGTTGCCCTAAACTCAAGGAGCTAAAATTCTAGTAATTAGTGAA,"Intron (Atp9b-201/Atp9b, intron 11 of 29)",18,80734141,80933983,199843,2,Atp9b-201,114302,Atp9b-201;Atp9b-212;Atp9b-209;Atp9b-207;Atp9b-213;Atp9b-202;Atp9b-204,Atp9b;Atp9b;Atp9b;Atp9b;Atp9b;Atp9b;Atp9b,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,4,50771,ENSMUSG00000024566,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26718,cg01855583,-0.000003,0.00000114,-2.619571291,0.009237165,loss,ns,0.00000386,0.00000194,1.985787642,0.047937543,pos,ns,0.001751019,0.000569721,3.073468095,0.002303849,pos,ns,2.637546067,-0.0000539,0.0000196,-2.749159574,0.006325319,neg,ns,0.969026181,Camta1,Camta1_Exon,4,151835859,151835908,151835859,151835860,50,+,CGCAGAATACACTTTGGGAAACGCTCTAAGGAAACAGAAAATAAAATGTA,"Exon (Camta1-211/Camta1, exon 2 of 25)",4,150917322,151861669,944348,2,Camta1-211,25761,Camta1-211;Camta1-202;Camta1-201;Camta1-210;Camta1-209;Camta1-212;Camta1-206,Camta1;Camta1;Camta1;Camta1;Camta1;Camta1;Camta1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,22,100072,ENSMUSG00000014592,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12171,cg02611007,1.28E-08,0.00000185,0.006932297,0.99447333,gain,ns,0.00000625,0.00000315,1.985379024,0.047983194,pos,ns,0.003353403,0.000921897,3.637501227,0.000322319,pos,ns,3.491713628,-0.0000915,0.0000317,-2.884792128,0.004191172,neg,ns,0.956019434,Map2k5,Map2k5_Intron,9,63198751,63198800,63198751,63198752,50,+,CGGTAATTACAAGACAGAAAATTAACTAGAACTCTTATTAAGGCTTTGTT,"Intron (Map2k5-201/Map2k5, intron 19 of 21)",9,63163768,63377902,214135,2,Map2k5-201,179102,Map2k5-201,Map2k5,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,34,37,23938,ENSMUSG00000058444,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26214,cg10378662,0.0000738,0.0000537,1.374906234,0.170153423,gain,ns,-0.000181071,0.0000912,-1.985290599,0.047993077,neg,ns,0.076037356,0.026720404,2.845666444,0.004727074,pos,ns,2.325407619,-0.003865387,0.000918912,-4.206479731,0.000034,neg,ns,0.447188635,Sox5,Sox5_Intron,6,144503623,144503672,144503671,144503672,50,-,GATTTCTATTTATTAAGCTAAAAAGGTCACCATTTTCTACGGCTGGGCCG,"Intron (Sox5-209/Sox5, intron 3 of 13)",6,143843739,144781977,938239,2,Sox5-209,278305,Sox5-209;Sox5-212,Sox5;Sox5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,71,20678,ENSMUSG00000041540,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8704,cg00672555,0.0000351,0.00000566,6.213016116,1.67E-09,gain,yes,-0.0000191,0.00000961,-1.98502096,0.048023227,neg,ns,0.004593339,0.002814898,1.631796031,0.103737849,pos,ns,0.98406276,-0.000189636,0.0000968,-1.958969085,0.051012564,neg,ns,0.021250447,Gm31907,Gm31907_fiveUTR,18,45560119,45560168,45560119,45560120,50,+,CGCGCCGCGAGAGCAACCCCTTCACCGAAATAGCCATGAGCAGCTGCAGG,Promoter (<=1kb),18,45501590,45560130,58541,2,Gm31907-202,0,Gm31907-202;Kcnn2-205;Kcnn2-201;Kcnn2-207;Kcnn2-206;Kcnn2-202;Kcnn2-208;Kcnn2-203,Gm31907;Kcnn2;Kcnn2;Kcnn2;Kcnn2;Kcnn2;Kcnn2;Kcnn2,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,15,15,102634286,NA,mapped to different genes,18,45559636,45560643,1008,*,1008,101,0.691468254,0.851522248,0.100198413,1.25E-76,CpGisland,TRUE,U3,Pr-B
22584,cg18673449,-0.00000255,0.00000303,-0.841132829,0.400921869,loss,ns,0.0000102,0.00000515,1.984972367,0.048028662,pos,ns,0.005049572,0.001509347,3.345533252,0.000922195,pos,ns,3.035177223,-0.000131431,0.0000519,-2.532076371,0.011832468,neg,ns,0.931839819,Rpl19-ps10,Rpl19-ps10_Intergenic_downstream,7,115300463,115300512,115300463,115300464,50,+,CGGTTAAGTAGGCAGCGAACACTTCTCAAGATGTTTTCATCGATTTTGCC,Distal Intergenic,7,115172056,115172385,330,1,Rpl19-ps10-201,128407,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,29,668472,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26700,cg18427543,-0.00000306,0.00000152,-2.018507543,0.044399249,loss,ns,0.00000511,0.00000258,1.984940869,0.048032185,pos,ns,0.000908439,0.000754756,1.203618662,0.229655303,pos,ns,0.638923522,-0.0000194,0.000026,-0.748960967,0.454448639,neg,ns,0.959060836,Ivns1abp,Ivns1abp_threeUTR,1,151355248,151355297,151355296,151355297,50,-,GCAGTCCTGCCCCAGTTCTCCTAAGAAAAATCCGCTGTGGGCAGAGAACG,3' UTR,1,151344477,151364422,19946,1,Ivns1abp-201,10771,Ivns1abp-201;Ivns1abp-203;Ivns1abp-202;Ivns1abp-204,Ivns1abp;Ivns1abp;Ivns1abp;Ivns1abp,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,3,117198,ENSMUSG00000023150,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25817,cg06441752,0.0000283,0.0000051,5.545482588,6.28E-08,gain,yes,-0.0000172,0.00000867,-1.984567432,0.048073974,neg,ns,0.007304925,0.002538851,2.877256055,0.004289874,pos,ns,2.367555468,-0.000129268,0.0000873,-1.480544416,0.139743614,neg,ns,0.080918646,Uncx,Uncx_Intergenic_downstream,5,139551933,139551982,139551981,139551982,50,+,AGGATCAGGGTGTAAATTATATACAACTAAATATCCAGCCGCCCATACCG,Distal Intergenic,5,139543898,139545268,1371,1,Uncx-202,8035,Uncx-201,Uncx,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,59,88,22255,ENSMUSG00000029546,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
26346,cg05454558,0.0000355,0.00000385,9.233260748,4.26E-18,gain,yes,-0.000013,0.00000654,-1.984446705,0.04808749,neg,ns,-0.002666305,0.001916144,-1.391495048,0.16507306,neg,ns,0.782323798,0.000252169,0.0000659,3.826775845,0.000157039,pos,ns,0.088543896,Kiz,Kiz_Intron,2,146834580,146834629,146834580,146834581,50,+,CGAGCAAAACTCCGCGGTTCAACAGCTAAAGAGCAATTTGATGGGGCTGG,"Intron (Gm14114-201/Gm14114-201, intron 1 of 1)",2,146855864,146970097,114234,1,Kiz-201,-21235,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,29,228730,ENSMUSG00000074749,mapped to different genes,2,146834500,146834593,94,*,94,8,0.531914894,1.205128205,0.085106383,0.00000736,CpGisland,TRUE,U13,Hc-P
27172,cg16197517,-0.0000113,0.00000522,-2.162018943,0.031381552,loss,ns,0.0000176,0.00000886,1.984390292,0.048093807,pos,ns,0.000511391,0.002596146,0.196980636,0.843971774,pos,ns,0.073672078,0.00000449,0.0000893,0.050251007,0.959954727,pos,ns,0.877789218,Map3k15,Map3k15_Exon,X,160086348,160086397,160086396,160086397,50,-,TCTTTATGTCCATGATAATTCTGATGACTTTCAAATCTACTTTTCCACCG,"Exon (Map3k15-201/Map3k15, exon 13 of 29)",20,159988433,160123351,134919,1,Map3k15-201,97915,Map3k15-201,Map3k15,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,270672,ENSMUSG00000031303,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14844,cg26869798,-0.0000198,0.00000678,-2.921667222,0.003737403,loss,ns,0.0000229,0.0000115,1.984329784,0.048100583,pos,ns,-0.008382923,0.00337468,-2.484064726,0.013517141,neg,ns,1.869115169,0.000263877,0.000116055,2.273728615,0.023665863,pos,ns,0.860696826,Gm45288,Gm45288_Intergenic_upstream,8,77952348,77952397,77952348,77952349,50,-,CGGTGCTGGAGTTTATCATGCAAGAAGAGTAATTATATTTGAATTGTGTC,Distal Intergenic,8,78107960,78108110,151,1,Gm45288-201,-155612,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,7,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19231,cg09248411,-0.00000595,0.00000453,-1.313014148,0.190149288,loss,ns,0.0000153,0.0000077,1.984075792,0.048129036,pos,ns,0.00610246,0.002255685,2.705368554,0.00720026,pos,ns,2.142651814,-0.000187009,0.0000776,-2.41075615,0.016501112,neg,ns,0.910487358,Gm32308,Gm32308_Intergenic_downstream,6,98801462,98801511,98801462,98801463,50,+,CGTATGTGATAAGACAGTTGGATGAAATTTTTAAGCTGTCATTAAAAATG,Distal Intergenic,6,98757749,98758028,280,1,Gm32308-201,43713,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,10,102634810,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12630,cg01410982,0.00000696,0.00000216,3.223005099,0.001403575,gain,ns,-0.00000728,0.00000367,-1.983944608,0.048143737,neg,ns,-0.000956904,0.001075201,-0.88997691,0.37416842,neg,ns,0.42693287,0.0000289,0.000037,0.782475492,0.434532471,pos,ns,0.918500791,Csnk1g1,Csnk1g1_Exon,9,66019817,66019866,66019817,66019818,50,+,CGCCGAGGAGAGTGGGAAATTCAGCCCAGCCGGCAGACCAATACCTCATA,"Exon (Csnk1g1-212/Csnk1g1, exon 11 of 13)",9,65908924,66041906,132983,1,Csnk1g1-209,110893,Csnk1g1-209;Csnk1g1-212;Csnk1g1-201;Csnk1g1-214;Csnk1g1-202;Csnk1g1-204;Csnk1g1-213;Csnk1g1-211;Csnk1g1-215;Csnk1g1-205,Csnk1g1;Csnk1g1;Csnk1g1;Csnk1g1;Csnk1g1;Csnk1g1;Csnk1g1;Csnk1g1;Csnk1g1;Csnk1g1,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,4,214897,ENSMUSG00000032384,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25030,cg25393402,-0.00000737,0.00000881,-0.8362006,0.40368614,loss,ns,0.0000297,0.000015,1.98368275,0.048173094,pos,ns,0.002192003,0.004386281,0.499740544,0.617612296,pos,ns,0.209284066,0.0000816,0.000150844,0.540628335,0.589152006,pos,ns,0.168978484,Fgfr2,Fgfr2_Intron,7,131644751,131644800,131644799,131644800,50,+,CGTCTCTGAACATAGTCATTCAGCTCTAAATGGGTCGCCTGTAACAAGCG,"Intron (Fgfr2-217/Fgfr2, intron 2 of 6)",7,130162451,133123350,2960900,2,Fgfr2-217,1478550,Fgfr2-217,Fgfr2,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,58,79,14183,ENSMUSG00000030849,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
7662,cg25607172,0.0000437,0.00000441,9.912537583,2.67E-20,gain,yes,-0.0000149,0.00000749,-1.983501066,0.048193472,neg,ns,0.001823026,0.002194682,0.830656096,0.406807214,pos,ns,0.390611355,0.0000307,0.0000755,0.407310129,0.684061336,pos,ns,0.094462732,Nkx2-3,Nkx2-3_Exon,19,43614518,43614567,43614566,43614567,50,+,CAGGTGAAAATCTGGTTCCAGAATCGCAGGTACAAGTGCAAGAGACAGCG,"Exon (Nkx2-3-201/Nkx2-3, exon 2 of 2)",19,43612325,43615892,3568,1,Nkx2-3-201,2193,Nkx2-3-201,Nkx2-3,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,6,18089,ENSMUSG00000044220,conserved gene and region,19,43614336,43615012,677,*,677,89,0.70310192,1.063713721,0.131462334,1.99E-79,CpGisland,TRUE,U3,Pr-B
7803,cg07116247,0.0000142,0.00000414,3.441493551,0.000657906,gain,ns,-0.0000139,0.00000703,-1.98340111,0.048204686,neg,ns,0.001086439,0.002060252,0.527333026,0.598339529,pos,ns,0.223052305,-0.0000041,0.0000709,-0.057920112,0.953849579,neg,ns,0.796469023,Hyou1,Hyou1_Exon,9,44385222,44385271,44385270,44385271,50,+,CATCACCTTTAACCGCTACAGCCATGATTTCAACTTCCACATCAACTACG,"Exon (Hyou1-201/Hyou1, exon 13 of 26)",9,44379490,44392369,12880,1,Hyou1-201,5732,Hyou1-201;Hyou1-208;Hyou1-207;Hyou1-206;Hyou1-209;Hyou1-203;Hyou1-204;Hyou1-202,Hyou1;Hyou1;Hyou1;Hyou1;Hyou1;Hyou1;Hyou1;Hyou1,0;0;0;0;5638;0;0;4693,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,12282,ENSMUSG00000032115,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5388,cg10583873,-0.0000861,0.00000939,-9.167991945,6.87E-18,loss,yes,0.0000316,0.000016,1.983246818,0.048222,pos,ns,0.003372847,0.004673375,0.72171541,0.471013466,pos,ns,0.326966676,-0.000268445,0.000160717,-1.670297987,0.095869726,neg,ns,0.767427047,Mvb12b,Mvb12b_Intron,2,33747032,33747081,33747080,33747081,50,-,CTCAAACTGTTTACTAATTAACACTTAAAAAGACACAAATTAGATATGCG,"Intron (Mvb12b-201/Mvb12b, intron 9 of 9)",2,33729953,33887946,157994,2,Mvb12b-201,140865,Mvb12b-201,Mvb12b,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,28,47,72543,ENSMUSG00000038740,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6783,cg01938167,0.0000946,0.000015,6.298930088,1.03E-09,gain,yes,-0.0000506,0.0000255,-1.983207484,0.048226415,neg,ns,0.059613585,0.007475291,7.974751346,2.97E-14,pos,yes,13.52754681,-0.001037765,0.000257075,-4.036824894,0.0000683,neg,ns,0.831366767,Azin1,Azin1_Exon,15,38501424,38501473,38501472,38501473,50,-,AGTTATCAATAACATTTCCAAGGTTTGTTCCTTCATCCAACAGGCCAACG,"Exon (Azin1-201/Azin1, exon 3 of 12)",15,38487427,38519266,31840,2,Azin1-201,17793,Azin1-201;Azin1-203;Azin1-205;Azin1-206;Azin1-202;Azin1-207;Azin1-204,Azin1;Azin1;Azin1;Azin1;Azin1;Azin1;Azin1,0;0;0;-4036;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,9,54375,ENSMUSG00000037458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14645,cg01167424,-0.00000744,0.00000245,-3.037659261,0.002586898,loss,ns,0.00000825,0.00000416,1.982953518,0.048254928,pos,ns,0.002851182,0.001218507,2.33989879,0.01992328,pos,ns,1.700639153,-0.0000638,0.0000419,-1.522220093,0.128973321,neg,ns,0.95095026,Rbfox2,Rbfox2_Intron,15,77089402,77089451,77089402,77089403,50,+,CGGTTTGCCCTAGGCTCTACCACAAGCTCGGTGAAGTACACAGCCTCAAT,"Intron (1700109K24Rik-202/1700109K24Rik-202, intron 1 of 1)",15,77078990,77306928,227939,2,Rbfox2-204,217477,Rbfox2-204;Rbfox2-203;Rbfox2-202;Rbfox2-206;Rbfox2-208;Rbfox2-209;Rbfox2-201;Rbfox2-211;Rbfox2-215;Rbfox2-207,Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,20,93686,ENSMUSG00000033565,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25247,cg04130851,0.000125154,0.0000282,4.434809995,0.0000128,gain,ns,-0.0000951,0.0000479,-1.982684261,0.048285173,neg,ns,0.116426042,0.014045761,8.289051836,3.50E-15,pos,yes,14.45571222,-0.002058852,0.000483033,-4.262345641,0.0000269,neg,ns,0.478003127,Etv6,Etv6_fiveUTR,6,134222896,134222945,134222896,134222897,50,-,CGTAGCCCAGTGGCTCAAGTGGGCTGAAAATGAGTTTTCTTTAAGGCCAA,5' UTR,6,134035700,134270155,234456,1,Etv6-201,187196,Etv6-201;Etv6-202;Etv6-204,Etv6;Etv6;Etv6,0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,7,14011,ENSMUSG00000030199,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19605,cg04929868,0.0000522,0.00000645,8.098928745,1.28E-14,gain,yes,-0.0000217,0.000011,-1.982602749,0.048294333,neg,ns,-0.007928476,0.003210543,-2.469512344,0.014068216,neg,ns,1.851760975,0.000287721,0.00011041,2.605929109,0.009604871,pos,ns,0.863084586,Hnrnpdl,Hnrnpdl_threeUTR,5,100035684,100035733,100035684,100035685,50,-,CGACCCCCAGAGATAGACGTGGTCAGGGTGACACACGGCCTGCAATGAAG,Promoter (<=1kb),5,100033577,100036068,2492,2,Hnrnpdl-203,335,Enoph1-202;Enoph1-201;Enoph1-203;Hnrnpdl-203;Hnrnpdl-202;Hnrnpdl-207;Hnrnpdl-201;Hnrnpdl-204;Hnrnpdl-205;Hnrnpdl-206,Enoph1;Enoph1;Enoph1;Hnrnpdl;Hnrnpdl;Hnrnpdl;Hnrnpdl;Hnrnpdl;Hnrnpdl;Hnrnpdl,0;0;0;0;0;0;0;0;0;1390,TRUE,FALSE,TRUE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,8,8,50926,ENSMUSG00000029328,conserved gene and region,5,100035645,100035745,101,*,101,9,0.613861386,0.945889698,0.089108911,0.000001,CpGisland,TRUE,U12,Tr-I
989,cg06035436,0.0000054,0.00000391,1.380801946,0.168334527,gain,ns,0.0000132,0.00000664,1.982583763,0.048296466,pos,ns,0.004151104,0.001945973,2.133176048,0.033695381,pos,ns,1.472429627,-0.00010647,0.0000669,-1.590959352,0.112637934,neg,ns,0.922865929,Rdh14,Rdh14_Intergenic_downstream,12,10401042,10401091,10401090,10401091,50,-,GAGTTACAAGCTTTCTTCCACTGCCATCTGGCAGGTTTACTGATGGATCG,Distal Intergenic,12,10390772,10395562,4791,1,Rdh14-201,10319,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,105014,ENSMUSG00000020621,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14120,cg20580364,0.00000771,0.00000187,4.11631716,0.0000494,gain,ns,-0.00000631,0.00000318,-1.982243271,0.048334744,neg,ns,0.000994536,0.000932303,1.066752038,0.286913887,pos,ns,0.542248431,-0.0000184,0.0000321,-0.574064192,0.566340647,neg,ns,0.059460236,Hoxd10,Hoxd10_Promoter,2,74689623,74689672,74689671,74689672,50,+,GTATTTGAACAGCTGCGTAAAGGTTTAAAAGGTCTGTCTCATTGCCACCG,Promoter (2-3kb),2,74691924,74695105,3182,1,Hoxd10-201,-2252,Hoxd10-201;Hoxd11-201,Hoxd10;Hoxd11,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,2,24,15430,ENSMUSG00000050368,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
5556,cg10932472,-0.00000382,0.00000286,-1.335885112,0.182566701,loss,ns,0.00000962,0.00000485,1.982216106,0.048337799,pos,ns,0.003924362,0.001421452,2.760812858,0.006109287,pos,ns,2.214009471,-0.000109145,0.0000489,-2.232745467,0.026279505,neg,ns,0.947270318,Pbx3,Pbx3_Intron,2,34254181,34254230,34254181,34254182,50,-,CGAGTAATAGGAAGCAATATGGTTGCACTTGTGTCACAGTTGGAAGCCTT,"Intron (Pbx3-202/Pbx3, intron 2 of 7)",2,34171457,34372038,200582,2,Pbx3-202,117808,Pbx3-202;Pbx3-201;Pbx3-210;Pbx3-206;Pbx3-207;Pbx3-209;Pbx3-204;Pbx3-205;Pbx3-203,Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,82,18516,ENSMUSG00000038718,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7263,cg01079453,-0.00000327,0.00000148,-2.211089028,0.027759253,loss,ns,0.00000498,0.00000251,1.98216928,0.048343065,pos,ns,0.001165936,0.000736496,1.583086384,0.114421408,pos,ns,0.941492714,0.00000914,0.0000253,0.360706288,0.718564689,pos,ns,0.956105758,Thoc2,Thoc2_Exon,X,41823680,41823729,41823728,41823729,50,+,TCATAGTCTAATTGATCAGCCTTATTTCCACCATCAAATCCAGTTGCCCG,"Exon (Thoc2-201/Thoc2, exon 27 of 39)",20,41794991,41911901,116911,2,Thoc2-201,88172,Thoc2-201;Thoc2-202;Thoc2-211;Thoc2-214,Thoc2;Thoc2;Thoc2;Thoc2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,7,331401,ENSMUSG00000037475,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23693,cg08874288,-0.00000163,0.00000183,-0.892102949,0.373029688,loss,ns,-0.00000616,0.00000311,-1.982044418,0.04835711,neg,ns,-0.001152585,0.000910687,-1.265621115,0.20659914,neg,ns,0.684871491,-0.0000112,0.0000313,-0.356223815,0.72191527,neg,ns,0.946238947,Cx3cr1,Cx3cr1_Exon,9,119909381,119909430,119909381,119909382,50,+,CGCCTTTGGTCCCTTGGCCAGCAGAGATGTATAGCAACATACCGAGTCCA,"Exon (Wdr48-201/Wdr48, exon 8 of 19)",9,119901616,120068283,166668,2,Cx3cr1-202,158853,Cx3cr1-202;Wdr48-201;Wdr48-208;Wdr48-205;Wdr48-204;Wdr48-202;Wdr48-210,Cx3cr1;Wdr48;Wdr48;Wdr48;Wdr48;Wdr48;Wdr48,0;0;0;0;0;-3196;-4208,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,13051,ENSMUSG00000052336,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21934,cg19639202,-0.00000746,0.00000606,-1.230940405,0.219278257,loss,ns,0.0000204,0.0000103,1.981753317,0.048389869,pos,ns,0.008564636,0.003017268,2.838540095,0.004831143,pos,ns,2.315950112,-0.000272362,0.000103764,-2.624828607,0.009098865,neg,ns,0.913772303,Faf1,Faf1_Intron,4,109759491,109759540,109759491,109759492,50,-,CGATGGGAAAATACTGCAAATATTTCCGAAATCGAGTTGGCCATACTGAC,"Intron (Faf1-201/Faf1, intron 7 of 18)",4,109676588,109963960,287373,1,Faf1-201,82903,Faf1-201;Gm12808-201,Faf1;Gm12808,0;-4674,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,24,14084,ENSMUSG00000010517,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20908,cg20644522,0.000129073,0.0000136,9.467910485,7.55E-19,gain,yes,-0.0000459,0.0000232,-1.981707874,0.048394984,neg,ns,0.018851148,0.006785125,2.778305121,0.005797529,pos,ns,2.236757092,-0.000140887,0.00023334,-0.60378467,0.546428372,neg,ns,0.323320058,Pax6,Pax6_Intron,2,105686862,105686911,105686862,105686863,50,+,CGAAATATCTGGTACAAAGGATGCTTCTGTCACTCGCAAGAATTTGTTAT,"Intron (Pax6-206/Pax6, intron 7 of 12)",2,105668900,105697364,28465,1,Pax6-206,17962,Pax6-206;Pax6-207;Pax6-210;Pax6-214;Pax6-208;Pax6-202;Pax6-205;Pax6-225;Pax6-204;Pax6-201;Pax6-203;Pax6-224;Pax6-219;Pax6-221;Pax6-213;Pax6-211;Pax6-222;Pax6-212;Pax6-215;Pax6-223;Pax6-209;Pax6-216,Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,78,18508,ENSMUSG00000027168,conserved gene and region,2,105686550,105686863,314,*,314,18,0.585987261,0.704474635,0.057324841,7.54E-10,CpGisland,TRUE,U13,Hc-P
25405,cg25520784,-0.0000053,0.00000346,-1.530592036,0.126890035,loss,ns,0.0000117,0.00000588,1.981333244,0.048437173,pos,ns,0.003121985,0.001723853,1.811050218,0.071100931,pos,ns,1.148124714,-0.000122952,0.0000593,-2.073972713,0.038907127,neg,ns,0.920609204,Cux1,Cux1_threeUTR,5,136274303,136274352,136274303,136274304,50,-,CGCTCTGAAGCCATTAGATGGCAGATAAAAAGCCCCCTTTTAATATGTGG,3' UTR,5,136248135,136360018,111884,2,Cux1-205,85666,Cux1-205;Cux1-207;Cux1-211;Cux1-203;Cux1-213;Cux1-201;Cux1-204;Cux1-209;Cux1-212;Cux1-206;Cux1-202,Cux1;Cux1;Cux1;Cux1;Cux1;Cux1;Cux1;Cux1;Cux1;Cux1;Cux1,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,8,21,13047,ENSMUSG00000029705,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22549,cg18535797,-0.00000466,0.00000467,-0.998007729,0.319053977,loss,ns,0.0000157,0.00000793,1.981189514,0.048453368,pos,ns,0.00215686,0.002322694,0.928602556,0.353817566,pos,ns,0.451220609,-0.000131892,0.0000799,-1.651177297,0.099715,neg,ns,0.890015224,Rpl19-ps10,Rpl19-ps10_Intergenic_upstream,7,115092883,115092932,115092883,115092884,50,+,CGAATTATGGCTGGATGCATTCCTATGTCAACATGTGCCACGCTCATTTC,Distal Intergenic,7,115172056,115172385,330,1,Rpl19-ps10-201,-79124,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,29,668472,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23690,cg27161939,-0.00000297,0.00000342,-0.869494278,0.385249551,loss,ns,-0.0000115,0.00000581,-1.981159498,0.04845675,neg,ns,-0.002407952,0.001701886,-1.414872624,0.158109529,neg,ns,0.801041956,-0.000036,0.0000585,-0.614633568,0.539247596,neg,ns,0.897364677,Grip1,Grip1_Exon,10,119897706,119897755,119897754,119897755,50,+,CCTTTGCAGATGAGAGTCCCTACACTAAATCCGCCAGCCAGACAAAGCCG,"Exon (Grip1-201/Grip1, exon 2 of 23)",10,119453830,120075597,621768,1,Grip1-202,443876,Grip1-202;Grip1-201;Grip1-212;Grip1-217;Grip1-218;Grip1-205;Grip1-213;Grip1-214;Grip1-208;Grip1-210;Grip1-215;Grip1-211;Grip1-209,Grip1;Grip1;Grip1;Grip1;Grip1;Grip1;Grip1;Grip1;Grip1;Grip1;Grip1;Grip1;Grip1,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,2,74053,ENSMUSG00000034813,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3866,cg12754230,0.0000528,0.0000203,2.605156359,0.009626086,gain,ns,0.0000682,0.0000344,1.981071803,0.048466634,pos,ns,0.023194923,0.010079819,2.301125013,0.022047773,pos,ns,1.656635281,-0.000589787,0.000346644,-1.701419917,0.089866842,neg,ns,0.759241214,5730522E02Rik,5730522E02Rik_Intron,11,25645326,25645375,25645374,25645375,50,-,ATATTGTTACTGATCCAGCACTCACATTCGTTAGAAATTAAACTGCCCCG,"Intron (5730522E02Rik-207/5730522E02Rik, intron 1 of 2)",11,25602763,25648147,45385,2,5730522E02Rik-207,2772,5730522E02Rik-207;5730522E02Rik-202;5730522E02Rik-201;5730522E02Rik-206;5730522E02Rik-208,5730522E02Rik;5730522E02Rik;5730522E02Rik;5730522E02Rik;5730522E02Rik,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,90,70626,NA,mapped to different genes,11,25645312,25645428,117,*,117,12,0.504273504,1.636363636,0.102564103,1.34E-09,CpGisland,TRUE,U15,NS
19474,cg19650497,0.00000957,0.00000887,1.079036821,0.281410157,gain,ns,0.0000298,0.0000151,1.980457328,0.048535936,pos,ns,-0.002032019,0.004415333,-0.46021872,0.645681871,neg,ns,0.189981407,0.000188722,0.000151843,1.242873914,0.214853541,pos,ns,0.820357164,Pja1,Pja1_Intergenic_downstream,X,99390045,99390094,99390045,99390046,50,+,CGAATGCCATGCCCAGTTCATTTCCTCTAAGGAAACACAACCTCGGGGGA,Distal Intergenic,20,99466146,99470672,4527,2,Pja1-204,80578,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,17,18744,ENSMUSG00000034403,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4824,cg01655814,-0.0000282,0.0000048,-5.87312646,0.000000011,loss,yes,-0.0000162,0.00000816,-1.980427311,0.048539324,neg,ns,0.006668778,0.002391028,2.789083402,0.005612681,pos,ns,2.250829647,-0.0003222,0.0000822,-3.918403805,0.000109715,neg,ns,0.884628063,Mapre3,Mapre3_Exon,5,30862583,30862632,30862583,30862584,50,-,CGAATACATCCACAACTTCAAGGTGCTGCAAGCAGCTTTCAAGAAGATGG,"Exon (Mapre3-201/Mapre3, exon 3 of 7)",5,30814641,30866106,51466,1,Mapre3-201,47942,Mapre3-201;Mapre3-203;Mapre3-202;Mapre3-205;Mapre3-206;Mapre3-204,Mapre3;Mapre3;Mapre3;Mapre3;Mapre3;Mapre3,0;0;0;0;0;-1890,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,Exon,6,6,100732,ENSMUSG00000029166,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
291,cg19544260,-0.0000143,0.00000453,-3.148298929,0.001802082,loss,ns,-0.0000152,0.00000769,-1.980406639,0.048541657,neg,ns,-0.002475914,0.002253456,-1.098718501,0.272743454,neg,ns,0.564245663,0.0000241,0.0000775,0.311239784,0.755827532,pos,ns,0.900421941,Glyr1,Glyr1_Exon,16,5021420,5021469,5021420,5021421,50,-,CGGGCCCCCTCCTGGATGAACAAATCACACTGCAAAAGTCACAGATCCTA,"Exon (Glyr1-202/Glyr1, exon 11 of 16)",16,5013909,5049857,35949,2,Glyr1-202,28388,Glyr1-202;Glyr1-201;Glyr1-205,Glyr1;Glyr1;Glyr1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,74022,ENSMUSG00000022536,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1303,cg21879618,0.0000639,0.00000751,8.518804231,7.11E-16,gain,yes,-0.0000253,0.0000128,-1.980202579,0.048564692,neg,ns,-0.001711699,0.003735911,-0.458174335,0.647148203,neg,ns,0.18899625,0.000243837,0.000128478,1.897890056,0.058639378,pos,ns,0.215386518,Fezf2,Fezf2_Intergenic_downstream,14,12338661,12338710,12338661,12338662,50,-,CGCCTAAGGCAATAGGACTGTACAATCTGTTATGTACGAGGCTGTGGCTT,Distal Intergenic,14,12342094,12345844,3751,2,Fezf2-203,7183,Fezf2-203;Fezf2-201;Fezf2-202,Fezf2;Fezf2;Fezf2,0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,21,45,54713,ENSMUSG00000021743,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
2820,cg20237793,0.0000154,0.00000349,4.405442581,0.0000146,gain,ns,-0.0000117,0.00000592,-1.980115172,0.048574562,neg,ns,0.001310547,0.001735115,0.755308687,0.450637264,pos,ns,0.346172898,-0.0000929,0.0000597,-1.556868666,0.120521956,neg,ns,0.045648186,Gm11279,Gm11279_Exon,13,21896930,21896979,21896978,21896979,50,+,AGAAAACATGCTCCAGGTGAGGCTCGAACTCACAACCTCGGCATCACCCG,Promoter (6-7kb),13,21903156,21904784,1629,1,Gm11279-201,-6177,NA,NA,NA,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,100418364,NA,mapped to different genes,13,21896909,21897021,113,*,113,10,0.539823009,1.215053763,0.088495575,0.000000205,CpGisland,TRUE,NA,NRS
26267,cg19544104,-0.0000068,0.00000418,-1.627312831,0.104686615,loss,ns,-0.000014,0.0000071,-1.980081248,0.048578393,neg,ns,-0.001152865,0.002078695,-0.554609848,0.579561456,neg,ns,0.236900505,-0.0000633,0.0000715,-0.885523407,0.376560763,neg,ns,0.917954653,Cfap61,Cfap61_Intron,2,145971791,145971840,145971839,145971840,50,-,TAGAAGGACATCTCCATGTGAACCAAGATGGATGCCAATTTTCCCTGCCG,"Intron (Cfap61-204/Cfap61, intron 7 of 15)",2,145934784,146043073,108290,1,Cfap61-204,37007,Cfap61-204;Cfap61-206,Cfap61;Cfap61,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,13,78774,ENSMUSG00000037143,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21446,cg07824575,-0.0000299,0.0000203,-1.472222249,0.141975361,loss,ns,-0.0000682,0.0000345,-1.979889674,0.048600032,neg,ns,0.046839398,0.010093387,4.640602825,0.00000513,pos,ns,5.289570984,-0.001710481,0.000347111,-4.927766602,0.00000136,neg,yes,0.856581582,Zswim6,Zswim6_Exon,13,107787835,107787884,107787835,107787836,50,-,CGGATGCGGTATAAAGACAGTGCCACAACATGGGCACAATAAAATATGTC,"Exon (Zswim6-204/Zswim6, exon 2 of 13)",13,107724617,107890064,165448,2,Zswim6-204,102180,Zswim6-204;Zswim6-201,Zswim6;Zswim6,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,14,26,67263,ENSMUSG00000032846,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6654,cg22218566,-0.0000502,0.0000118,-4.255388415,0.0000277,loss,ns,-0.0000396,0.00002,-1.979854239,0.048604036,neg,ns,0.011336119,0.005866708,1.932279554,0.054235918,pos,ns,1.265713001,-0.000629103,0.000201756,-3.118142942,0.001990724,neg,ns,0.617370621,Diaph1,Diaph1_Intron,18,37926010,37926059,37926058,37926059,50,+,AGTGGCTTCTCACCACTTCTTCTTGCGGTTTCAATCACAGGAAACAGACG,"Intron (Diaph1-205/Diaph1, intron 1 of 26)",18,37843601,37935476,91876,2,Diaph1-205,9417,Diaph1-205;Diaph1-201;Diaph1-204;Diaph1-202,Diaph1;Diaph1;Diaph1;Diaph1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,13367,ENSMUSG00000024456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23291,cg13186343,0.00000512,0.00000437,1.172364538,0.24195087,gain,ns,-0.0000147,0.00000742,-1.979754092,0.048615352,neg,ns,0.002310614,0.002173425,1.063120818,0.288554607,pos,ns,0.539771988,-0.000148578,0.0000747,-1.987828655,0.047710069,neg,ns,0.789015924,Eri3,Eri3_Intron,4,117651865,117651914,117651865,117651866,50,+,CGTGGGTTTTGAGCAGTGAGGTTAATGGCCCTCGCACCAAAGAGACAGCT,"Intron (Eri3-201/Eri3, intron 8 of 8)",4,117550365,117674297,123933,1,Eri3-201,101500,Eri3-201;Eri3-206;Eri3-203,Eri3;Eri3;Eri3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,82,97,140546,ENSMUSG00000033423,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26382,cg06347825,0.0000351,0.00000321,10.92330516,1.03E-23,gain,yes,-0.0000108,0.00000546,-1.979408433,0.048654427,neg,ns,0.004830657,0.001599438,3.020221695,0.002736,pos,ns,2.562883874,-0.000094,0.000055,-1.709354839,0.088385989,neg,ns,0.088410356,Nkx2-2,Nkx2-2_Intron,2,147186650,147186699,147186650,147186651,50,-,CGCTCCCAGCCAACGGCCCTCTAGAGCAAGATGAGAGGTGTAACGTGTCA,"Intron (Nkx2-2os-201/Nkx2-2os-201, intron 1 of 5)",2,147186305,147194243,7939,2,Nkx2-2-202,7544,Nkx2-2-203;Nkx2-2-201;Nkx2-2-202;Nkx2-2-204,Nkx2-2;Nkx2-2;Nkx2-2;Nkx2-2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,30,18088,ENSMUSG00000027434,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
2901,cg06798772,0.00000239,0.00000392,0.608866328,0.543058954,gain,ns,0.0000132,0.00000666,1.979311715,0.048665365,pos,ns,0.009046208,0.001949812,4.639529295,0.00000516,pos,ns,5.287461851,-0.000265088,0.0000671,-3.953362938,0.0000955,neg,ns,0.915218542,Lrmda,Lrmda_Intron,14,22037339,22037388,22037387,22037388,50,+,TTGTGAATGCTGCTGTTTAATTGATTCACTTAGCATTTGAAACTGTCACG,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,17627,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206,Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26538,cg06563758,-0.00000677,0.00000691,-0.98046171,0.327622807,loss,ns,-0.0000232,0.0000117,-1.97929285,0.048667499,neg,ns,-0.004361261,0.003437541,-1.268715268,0.205494469,neg,ns,0.687199864,0.0000894,0.000118217,0.756390887,0.449989297,pos,ns,0.870534564,Casz1,Casz1_Intron,4,148896228,148896277,148896228,148896229,50,-,CGGGCCAGTTTGGATATTTATTAAGAAAAAGCCAAAGATAATTAACTTTT,"Intron (Casz1-201/Casz1, intron 3 of 15)",4,148804429,148945129,140701,1,Casz1-201,91799,Casz1-201;Casz1-202;Casz1-205;Casz1-206,Casz1;Casz1;Casz1;Casz1,0;0;6847;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,94,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18058,cg13242767,-0.00000407,0.00000288,-1.412438695,0.158823932,loss,ns,0.00000969,0.00000489,1.979183902,0.048679823,pos,ns,0.001862169,0.001433931,1.298646233,0.195030547,pos,ns,0.709897362,-0.0000759,0.0000493,-1.539842469,0.12461885,neg,ns,0.931229758,Pola1,Pola1_Intron,X,93429561,93429610,93429561,93429562,50,-,CGCCAGTTACCAAGGGCGACTCGCATGGTGAACATAATTGCAATAATTTG,"Intron (Pola1-201/Pola1, intron 34 of 36)",20,93304767,93632155,327389,2,Pola1-201,202545,Pola1-201,Pola1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,59,62,18968,ENSMUSG00000006678,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11747,cg14988230,-0.00000194,0.0000022,-0.882335013,0.378279324,loss,ns,0.00000739,0.00000373,1.978980634,0.048702824,pos,ns,0.002475533,0.001093618,2.263616642,0.024288743,pos,ns,1.614594965,-0.0000797,0.0000376,-2.11862298,0.034917501,neg,ns,0.951523317,Abi2,Abi2_Exon,1,60437125,60437174,60437173,60437174,50,-,TCAAGGACACATAAGATTATTGCTCCAGCCAACCTTGAACGACCAGTTCG,"Exon (Abi2-201/Abi2, exon 3 of 9)",1,60409619,60481158,71540,1,Abi2-201,27506,Abi2-201;Abi2-206;Abi2-207;Abi2-210;Abi2-212;Abi2-208;Abi2-205;Abi2-209;Abi2-202;Abi2-204;Abi2-203;Abi2-211,Abi2;Abi2;Abi2;Abi2;Abi2;Abi2;Abi2;Abi2;Abi2;Abi2;Abi2;Abi2,0;0;0;0;0;0;0;27317;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,9,329165,ENSMUSG00000026782,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23440,cg12990321,0.0000257,0.0000031,8.276946249,3.81E-15,gain,yes,-0.0000104,0.00000527,-1.978611792,0.048744584,neg,ns,0.002768141,0.001544331,1.792452638,0.074035448,pos,ns,1.130560294,-0.0000746,0.0000531,-1.404469118,0.161180333,neg,ns,0.040735081,Dpyd,Dpyd_Exon,3,118433910,118433959,118433958,118433959,50,-,AAGAATACGCGTAGTCGAGGAGAGTACCAGCGGCAGGGGGGCAGCGGCCG,"Exon (Gm26871-202/Gm26871-202, exon 3 of 3)",3,118562129,119432924,870796,1,Dpyd-201,-128219,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,29,99586,ENSMUSG00000033308,mapped to different genes,3,118433691,118434190,500,*,500,37,0.624,0.795801609,0.074,1.85E-23,CpGisland,TRUE,U3,Pr-B
13748,cg20017843,-0.00000826,0.00000207,-3.981663008,0.0000853,loss,ns,0.00000697,0.00000352,1.978571358,0.048749164,pos,ns,0.001456547,0.001032115,1.4112252,0.159181031,pos,ns,0.798108688,-0.0000218,0.0000355,-0.615142717,0.538911766,neg,ns,0.955995433,Map3k20,Map3k20_Intron,2,72378868,72378917,72378916,72378917,50,-,TGTTATTCCTCATGAATGGACCCTTTACATCTAATTGTTGCAGCTTCACG,"Intron (Map3k20-201/Map3k20, intron 8 of 19)",2,72285637,72442610,156974,1,Map3k20-201,93231,Map3k20-201;Map3k20-204;Map3k20-202;Map3k20-206,Map3k20;Map3k20;Map3k20;Map3k20,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,14,18,65964,ENSMUSG00000004085,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5268,cg02127116,-0.0000154,0.00000391,-3.955249557,0.0000948,loss,ns,0.0000131,0.00000664,1.978529933,0.048753856,pos,ns,0.002214177,0.001943969,1.138998414,0.255583201,pos,ns,0.592467695,-0.0000722,0.0000669,-1.079429483,0.281235435,neg,ns,0.585324495,Srsf12,Srsf12_Exon,4,33225829,33225878,33225829,33225830,50,-,CGTCAGATTGAAATACAGTTTGCACAAGGTGATCGCAAAAGTAAGTGTGA,"Exon (Srsf12-202/Srsf12, exon 3 of 5)",4,33208991,33233340,24350,1,Srsf12-201,16838,Srsf12-201;Srsf12-202,Srsf12;Srsf12,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,272009,ENSMUSG00000054679,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22869,cg25032635,-0.0000341,0.00000933,-3.650734771,0.000306809,loss,ns,0.0000314,0.0000159,1.978099329,0.048802655,pos,ns,-0.002693836,0.004643699,-0.580105529,0.562264853,neg,ns,0.250059063,-0.0000241,0.000159696,-0.151020559,0.880057722,neg,ns,0.656346632,Meis2,Meis2_Intron,2,116045710,116045759,116045758,116045759,50,+,ACTGAGGGGTCTATTCTCTTGCCAATTCACATGCGTAACTCCCATCAGCG,"Intron (Meis2-201/Meis2, intron 7 of 11)",2,115863064,116065047,201984,2,Meis2-201,19288,Meis2-201;Meis2-203;Meis2-205;Meis2-206;Meis2-204;Meis2-202;Meis2-216;Meis2-217;Meis2-213;Meis2-211;Meis2-210;Meis2-209;Meis2-212,Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2,0;0;0;0;0;0;0;0;0;0;0;0;13083,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,45,97,17536,ENSMUSG00000027210,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3586,cg13175699,-0.00000834,0.00000707,-1.179900276,0.238944515,loss,ns,0.0000237,0.000012,1.977966048,0.048817768,pos,ns,-0.0000952,0.003516329,-0.027066721,0.978423934,neg,ns,0.009472932,-0.000139384,0.000120926,-1.152640393,0.249946052,neg,ns,0.883970261,Gm12067,Gm12067_Intron,11,24618774,24618823,24618774,24618775,50,-,CGAGGAATGACTCATGTCATGGAGGACTTAATAATTCACTGTAATAAAAG,"Intron (Gm12068-201/Gm12068-201, intron 2 of 3)",11,24552438,24553962,1525,2,Gm12067-201,-64861,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,58,100417843,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2412,cg02863784,-0.00000444,0.00000132,-3.352381605,0.000900465,loss,ns,0.00000445,0.00000225,1.97789842,0.048825437,pos,ns,0.001515046,0.000658941,2.299213643,0.022157439,pos,ns,1.654480428,-0.0000437,0.0000227,-1.926546251,0.054950184,neg,ns,0.047984002,Fosb,Fosb_fiveUTR,7,19309447,19309496,19309495,19309496,50,+,GGGGCCCCTGTGACCACGCTGAGGTCGCCGGGAAGCCAAGGCTATGGCCG,Promoter (<=1kb),7,19302696,19310051,7356,2,Fosb-201,555,Fosb-201;Fosb-202;Fosb-203;Fosb-205;Fosb-207;Fosb-206;Fosb-204,Fosb;Fosb;Fosb;Fosb;Fosb;Fosb;Fosb,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,13,14282,ENSMUSG00000003545,mapped to different genes,7,19309463,19309595,133,*,133,13,0.609022556,1.081977472,0.097744361,4.22E-10,CpGisland,TRUE,NA,NRS
19675,cg27019830,-0.00000737,0.00000429,-1.719431253,0.086534037,loss,ns,-0.0000144,0.00000728,-1.977617795,0.048857274,neg,ns,-0.005234218,0.002133958,-2.452821743,0.014724716,neg,ns,1.83195307,-0.000121573,0.0000734,-1.656607738,0.098610546,neg,ns,0.914399877,Rps6ka5,Rps6ka5_Exon,12,100575627,100575676,100575675,100575676,50,-,CTATATACCTTCATCATTGCACTCCTGGCAACATTTGTCACTCCAGGACG,"Exon (Rps6ka5-209/Rps6ka5, exon 10 of 17)",12,100548439,100725120,176682,2,Rps6ka5-209,149444,Rps6ka5-209;Rps6ka5-201;Rps6ka5-202;Rps6ka5-205;Rps6ka5-206,Rps6ka5;Rps6ka5;Rps6ka5;Rps6ka5;Rps6ka5,0;0;0;-400;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,73086,ENSMUSG00000021180,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11609,cg15325373,0.0000594,0.00000978,6.069074628,3.75E-09,gain,yes,-0.0000329,0.0000166,-1.977368313,0.048885593,neg,ns,0.02286843,0.004869781,4.695987181,0.00000399,pos,ns,5.398907831,-0.000694987,0.000167471,-4.14988302,0.000043,neg,ns,0.108192499,Emx2,Emx2_fiveUTR,19,59458774,59458823,59458774,59458775,50,+,CGAACACTTCCATGGATTGTCCTTGGACTTAGGGCGCCCTGCCCGCCTTT,Promoter (<=1kb),19,59458372,59465357,6986,1,Emx2-201,402,Emx2-201;Emx2-202;Emx2-203,Emx2;Emx2;Emx2,0;-696;-3979,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,23,13797,ENSMUSG00000043969,mapped to different genes,19,59458392,59458858,467,*,467,34,0.597430407,0.819721218,0.072805139,2.25E-21,CpGisland,TRUE,U13,Hc-P
26437,cg10695553,-0.00000161,0.0000051,-0.315518471,0.75258033,loss,ns,0.0000171,0.00000866,1.977122051,0.048913559,pos,ns,-0.001275907,0.002536341,-0.503050442,0.615286026,neg,ns,0.210922948,0.0000198,0.0000872,0.226874184,0.820671111,pos,ns,0.872708381,Clcn6,Clcn6_Exon,4,148017554,148017603,148017602,148017603,50,+,TCAGACAGTTGAATGTGGCTCCCAGGAGGCCCCCAATGACCCCCATCACG,"Exon (Clcn6-205/Clcn6, exon 12 of 23)",4,148004259,148038821,34563,2,Clcn6-205,21218,Clcn6-205;Clcn6-201;Clcn6-202,Clcn6;Clcn6;Clcn6,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,26372,ENSMUSG00000029016,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4959,cg24147216,-0.0000053,0.00000225,-2.362112387,0.018788889,loss,ns,0.00000754,0.00000381,1.97712102,0.048913676,pos,ns,0.002923331,0.001117551,2.615837813,0.00933652,pos,ns,2.02981497,-0.0000323,0.0000384,-0.841311653,0.400821861,neg,ns,0.067160218,Pknox1,Pknox1_fiveUTR,17,31564829,31564878,31564829,31564830,50,-,CGGCACTGCGGGTCCCGATTGCTGCAGCCGCTTGTCAGTGTGATGAAGAT,Promoter (<=1kb),17,31564862,31605492,40631,1,Pknox1-202,0,Pknox1-201;Pknox1-206;Pknox1-212;Pknox1-209;Pknox1-202;Pknox1-208,Pknox1;Pknox1;Pknox1;Pknox1;Pknox1;Pknox1,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,8,8,18771,ENSMUSG00000006705,conserved gene and region,17,31564426,31564858,433,*,433,56,0.769053118,0.874873719,0.129330254,1.05E-49,CpGisland,TRUE,U1,Pr-A
5630,cg14948918,0.0000142,0.0000062,2.294208288,0.022446889,gain,ns,-0.0000208,0.0000105,-1.976928551,0.048935543,neg,ns,-0.009006703,0.003086203,-2.918376778,0.003775991,neg,ns,2.422969055,0.0000482,0.000106134,0.454175393,0.650020417,pos,ns,0.788214671,Hdac9,Hdac9_Exon,12,34431862,34431911,34431862,34431863,50,+,CGTGTACCAGAGCTTGGGATGGCGGCTCACGGAATGATTTTTTCCATTAG,"Exon (Hdac9-205/Hdac9, exon 4 of 25)",12,34047580,34528328,480749,2,Hdac9-205,96417,Hdac9-205;Hdac9-204;Hdac9-206;Hdac9-210;Hdac9-207;Hdac9-212;Hdac9-201;Hdac9-211;Hdac9-208;Hdac9-203;Hdac9-202;Hdac9-209,Hdac9;Hdac9;Hdac9;Hdac9;Hdac9;Hdac9;Hdac9;Hdac9;Hdac9;Hdac9;Hdac9;Hdac9,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,31,79221,ENSMUSG00000004698,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25120,cg15279296,-0.0000294,0.00000797,-3.691858001,0.000262973,loss,ns,0.0000268,0.0000135,1.976872459,0.048941918,pos,ns,-0.000263995,0.003968306,-0.066525863,0.947002051,neg,ns,0.02364908,-0.0000989,0.00013647,-0.724670516,0.469200779,neg,ns,0.84229184,Ahdc1,Ahdc1_Intron,4,133025421,133025470,133025421,133025422,50,+,CGCGCTGCCAAACCCCGCAGCCTGCTCACCAGGAATCTTGTTGCTGAGAG,"Intron (Ahdc1-210/Ahdc1, intron 2 of 3)",4,133011260,133060820,49561,1,Ahdc1-210,14161,Ahdc1-210;Ahdc1-203;Ahdc1-204;Ahdc1-205;Ahdc1-207;Ahdc1-211;Ahdc1-209;Ahdc1-206;Ahdc1-201,Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,35,49,230793,ENSMUSG00000037692,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3324,cg05881418,-0.00000236,0.00000365,-0.645858308,0.518848911,loss,ns,-0.0000122,0.0000062,-1.976683664,0.048963377,neg,ns,-0.002521387,0.001815553,-1.388770944,0.165899357,neg,ns,0.780155298,-0.000000873,0.0000624,-0.013988102,0.988848471,neg,ns,0.921726386,Gm11890,Gm11890_Intergenic_downstream,4,23602663,23602712,23602663,23602664,50,+,CGGTGGCACAAGCAGCTGCCTGATATTCTAAAGCAGTGAAACATCTGCAC,Distal Intergenic,4,23659928,23660344,417,2,Gm11890-201,57632,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,32,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3213,cg16378867,-0.00000295,0.00000152,-1.940806848,0.053187983,loss,ns,0.0000051,0.00000258,1.976128431,0.049026536,pos,ns,0.000267506,0.000755648,0.354008867,0.723572897,pos,ns,0.140517709,0.0000194,0.000026,0.748417307,0.454775916,pos,ns,0.032014073,Xpo1,Xpo1_Promoter,11,23255968,23256017,23256016,23256017,50,-,ACTCAACCGAGATGGAATCTCCCAGTCTGAACCGGTTTCAACCGGTTCCG,Promoter (<=1kb),11,23256041,23297597,41557,1,Xpo1-204,-73,Xpo1-201;Xpo1-204;Xpo1-203;Xpo1-206;Xpo1-202;Xpo1-205,Xpo1;Xpo1;Xpo1;Xpo1;Xpo1;Xpo1,0;0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,7,14,103573,ENSMUSG00000020290,conserved gene but different region,11,23255743,23256076,334,*,334,31,0.676646707,0.821746032,0.092814371,7.76E-23,CpGisland,TRUE,U1,Pr-A
4766,cg10295411,0.0000537,0.00000553,9.711636464,1.22E-19,gain,yes,-0.0000186,0.00000939,-1.975764996,0.049067914,neg,ns,0.000714417,0.0027523,0.25957077,0.795367182,pos,ns,0.099432332,0.0000821,0.0000947,0.867413544,0.3863864,pos,ns,0.124826392,Mecom,Mecom_fiveUTR,3,30509439,30509488,30509487,30509488,50,-,GTTTCCTTGCCCTGCCTTTGGATCTCATGCTGTGCCCAGTCCTGCAGCCG,Promoter (<=1kb),3,30236569,30509487,272919,2,Mecom-209,0,Mecom-212;Mecom-213;Mecom-207;Mecom-208;Mecom-211;Mecom-209,Mecom;Mecom;Mecom;Mecom;Mecom;Mecom,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,13,80,14013,ENSMUSG00000027684,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
23648,cg09789157,-0.00000846,0.00000175,-4.823250905,0.00000222,loss,ns,0.00000589,0.00000298,1.975735686,0.049071252,pos,ns,0.002008857,0.000872961,2.301198271,0.022043579,pos,ns,1.656717898,-0.000053,0.00003,-1.766655979,0.078269888,neg,ns,0.068766633,Fbxl14,Fbxl14_Exon,6,119479974,119480023,119480022,119480023,50,+,GCCTACCACAAGTCGGTGTGGCGGGGGGTGGAGGCCAAGCTGCACCTGCG,Promoter (<=1kb),6,119479668,119482630,2963,1,Fbxl14-201,306,Fbxl14-201;Wnt5b-204;Wnt5b-203,Fbxl14;Wnt5b;Wnt5b,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,101358,ENSMUSG00000030019,conserved gene and region,6,119478978,119480269,1292,*,1292,186,0.743034056,1.054462484,0.143962848,4.39E-174,CpGisland,TRUE,NA,NRS
2934,cg04550865,-0.00000267,0.0000028,-0.954776216,0.340434797,loss,ns,0.00000938,0.00000475,1.975141386,0.049138982,pos,ns,0.003601124,0.001391102,2.588684272,0.010088419,pos,ns,1.996176887,-0.0001138,0.0000478,-2.378767123,0.017976005,neg,ns,0.952383976,Lrmda,Lrmda_Intron,14,22075015,22075064,22075063,22075064,50,-,ATTGAACAAAGCTCATTGAAGGAATATAACGGATGTCTTGAGGCTTTCCG,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,55303,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206,Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19030,cg24414269,0.00000316,0.00000508,0.620923154,0.535106446,gain,ns,0.000017,0.00000863,1.974491491,0.049213139,pos,ns,0.00910876,0.002529692,3.6007384,0.000369366,pos,ns,3.432542621,-0.000285547,0.000087,-3.282303132,0.001147194,neg,ns,0.910364543,Cdk12,Cdk12_Exon,11,98224594,98224643,98224594,98224595,50,-,CGGGATATTAAGTGTTCTAACATTTTGCTGAATAACAGGTAACATAGTAA,"Exon (Cdk12-203/Cdk12, exon 6 of 14)",11,98203059,98251564,48506,1,Cdk12-203,21535,Cdk12-203;Cdk12-201;Cdk12-202;Cdk12-205,Cdk12;Cdk12;Cdk12;Cdk12,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,25,69131,ENSMUSG00000003119,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8130,cg13818215,0.0000435,0.0000166,2.626066116,0.009066583,gain,ns,0.0000556,0.0000282,1.974490709,0.049213228,pos,ns,0.011414785,0.008253098,1.383090922,0.167632317,pos,ns,0.775642253,0.0000499,0.000283823,0.175827641,0.860544152,pos,ns,0.381796833,Pax2,Pax2_Intron,19,44762123,44762172,44762123,44762124,50,+,CGGCGTCCTGGAAATGAATCCAAGTGTTTGTGGTAATTAAGACTCCAAGA,"Intron (Pax2-203/Pax2, intron 3 of 9)",19,44756045,44837851,81807,1,Pax2-203,6078,Pax2-203;Pax2-201;Pax2-202,Pax2;Pax2;Pax2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,35,166,18504,ENSMUSG00000004231,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
12530,cg21346528,-0.00000799,0.00000504,-1.586793892,0.113578778,loss,ns,-0.0000169,0.00000856,-1.974437235,0.049219334,neg,ns,0.004511578,0.002507539,1.799205264,0.072958649,pos,ns,1.136923216,-0.000184735,0.0000862,-2.14225343,0.032951855,neg,ns,0.933737615,Hmbox1,Hmbox1_Exon,14,64896695,64896744,64896743,64896744,50,-,GAGGCTTCAAAACTGTATGACCTCTGACCCATGCTGTTTGCATGGTAGCG,"Exon (Hmbox1-201/Hmbox1, exon 3 of 11)",14,64811600,64949850,138251,2,Hmbox1-201,53106,Hmbox1-201;Hmbox1-202;Hmbox1-205;Hmbox1-209;Hmbox1-210;Hmbox1-203;Hmbox1-207;Hmbox1-204;Hmbox1-208,Hmbox1;Hmbox1;Hmbox1;Hmbox1;Hmbox1;Hmbox1;Hmbox1;Hmbox1;Hmbox1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,8,219150,ENSMUSG00000021972,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1211,cg27428464,0.0000164,0.0000108,1.513469127,0.131179366,gain,ns,0.0000363,0.0000184,1.974412321,0.049222179,pos,ns,0.017079561,0.005379174,3.17512708,0.001648278,pos,ns,2.782969411,-0.000448116,0.000184989,-2.422387862,0.015991912,neg,ns,0.711933047,Bcor,Bcor_Intron,X,12062525,12062574,12062525,12062526,50,-,CGCTTCAGCCCATATCCTGCTGTTAAATGCTGGGTTAATAAGTAGGGGAG,"Intron (Bcor-202/Bcor, intron 1 of 14)",20,12036740,12080553,43814,2,Bcor-202,17979,Bcor-202;Bcor-203;Bcor-204;Bcor-206;Bcor-201;Bcor-207;Bcor-205,Bcor;Bcor;Bcor;Bcor;Bcor;Bcor;Bcor,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,56,74,71458,ENSMUSG00000040363,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14242,cg10152878,-0.00000716,0.00000412,-1.739327726,0.082969738,loss,ns,0.0000138,0.00000699,1.97403357,0.049265446,pos,ns,0.002324662,0.002048348,1.134895839,0.257295704,pos,ns,0.589567465,-0.0000628,0.0000704,-0.892160155,0.372999078,neg,ns,0.901574434,Gm14427,Gm14427_Intergenic_downstream,2,74884757,74884806,74884757,74884758,50,+,CGTTTGACATATGCAGGGCATTGTCCTTGCAATAATCACCATCAGTCTGT,Downstream (1-2kb),2,74886372,74887006,635,2,Gm14427-201,2200,Gm14427-201,Gm14427,2200,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,2,2,667817,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21879,cg04780142,0.0000622,0.00000803,7.747107378,1.35E-13,gain,yes,-0.0000269,0.0000136,-1.973680257,0.049305837,neg,ns,0.002596422,0.003997706,0.649477886,0.516510461,pos,ns,0.286920878,-0.000138191,0.000137481,-1.005167525,0.315600128,neg,ns,0.644372949,Trim66,Trim66_Exon,7,109458202,109458251,109458250,109458251,50,+,ACAGGCATCTCTCCTGAGGAGGCAGCACAGATCTTGAGTCGCTCCAGTCG,"Exon (Trim66-202/Trim66, exon 14 of 20)",7,109449006,109493738,44733,2,Trim66-202,35487,Trim66-202;Trim66-201;Trim66-203,Trim66;Trim66;Trim66,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,4,330627,ENSMUSG00000031026,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9510,cg00826534,-0.00000128,0.00000186,-0.685671484,0.493432731,loss,ns,0.00000624,0.00000316,1.973383013,0.049339839,pos,ns,0.00265407,0.00092595,2.866319684,0.00443688,pos,ns,2.352922327,-0.0000892,0.0000318,-2.800620119,0.00542076,neg,ns,0.963401016,Exoc5,Exoc5_threeUTR,14,49034808,49034857,49034856,49034857,50,+,CCTCCTGTGCCAATGGATCTCTTTTGATGGTTTTTCGAATCATAATAGCG,3' UTR,14,49004090,49066653,62564,2,Exoc5-207,31796,Exoc5-207;Exoc5-206;Exoc5-204;Exoc5-202,Exoc5;Exoc5;Exoc5;Exoc5,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,4,105504,ENSMUSG00000061244,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3188,cg07224291,-0.0000113,0.00000663,-1.702440388,0.089675279,loss,ns,0.0000222,0.0000113,1.973273371,0.049352386,pos,ns,-0.000384331,0.003300501,-0.116446184,0.907374334,neg,ns,0.042213509,-0.0000646,0.000113504,-0.568814333,0.569893997,neg,ns,0.643201868,Eya4,Eya4_Exon,10,23163377,23163426,23163377,23163378,50,+,CGAGCTAAAGGCTTTACCTGACCCAGTAAAAGTGTCAAGCGCTCCATCTC,"Exon (Eya4-202/Eya4, exon 5 of 19)",10,23102963,23349903,246941,2,Eya4-202,186477,Eya4-202;Eya4-201;Eya4-208;Eya4-206;Eya4-203,Eya4;Eya4;Eya4;Eya4;Eya4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,6,14051,ENSMUSG00000010461,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16655,cg12324127,0.0000112,0.00000339,3.300324693,0.001078354,gain,ns,-0.0000114,0.00000576,-1.973245309,0.049355598,neg,ns,0.000335025,0.001688147,0.198456917,0.842817675,pos,ns,0.074266365,0.00000613,0.0000581,0.105547868,0.916009352,pos,ns,0.011340904,Tbx2,Tbx2_fiveUTR,11,85832804,85832853,85832852,85832853,50,+,AGATAGTCACAGTTTTCCAGAGATCACGACAAGATCTAACCAGTCGCGCG,Promoter (<=1kb),11,85832551,85841948,9398,1,Tbx2-201,253,Tbx2-201,Tbx2,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,12,14,21385,ENSMUSG00000000093,mapped to different genes,11,85832848,85833430,583,*,583,90,0.804459691,0.963848782,0.154373928,7.11E-88,CpGisland,TRUE,U3,Pr-B
8783,cg03292923,0.000112774,0.00000951,11.85884374,5.30E-27,gain,yes,-0.0000319,0.0000162,-1.973072592,0.04937537,neg,ns,0.000203454,0.004733082,0.042985581,0.965740702,pos,ns,0.015139465,0.000411034,0.00016277,2.52523795,0.012060386,pos,ns,0.497538617,Fgf8,Fgf8_fiveUTR,19,45741620,45741669,45741620,45741621,50,+,CGTCACCAGGCTCTGCTCCCTCACATGCTGTGTAAAATTAGGTGAGGACT,5' UTR,19,45736798,45742874,6077,2,Fgf8-201,1205,Fgf8-201;Fgf8-206;Fgf8-202;Fgf8-205;Fgf8-203;Fgf8-204,Fgf8;Fgf8;Fgf8;Fgf8;Fgf8;Fgf8,0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,6,18,14179,ENSMUSG00000025219,conserved gene and region,19,45741448,45741621,174,*,174,14,0.643678161,0.780769231,0.08045977,1.09E-09,CpGisland,TRUE,U13,Hc-P
10051,cg21267842,-0.00000482,0.00000267,-1.803644438,0.072257803,loss,ns,0.00000896,0.00000454,1.973063446,0.049376417,pos,ns,0.001103558,0.001330309,0.829550049,0.407431548,pos,ns,0.389945346,-0.0000063,0.0000457,-0.137814049,0.890476852,neg,ns,0.030254428,Maml3,Maml3_fiveUTR,3,52104476,52104525,52104524,52104525,50,+,GCCTTCTTTTTATAATCCATTATTTTCTAATAAATTCCAGGAGATTTCCG,Promoter (<=1kb),3,51685907,52105076,419170,2,Maml3-202,551,Maml3-202,Maml3,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,14,32,433586,ENSMUSG00000061143,conserved gene and region,3,52104524,52104648,125,*,125,14,0.592,1.340996169,0.112,1.05E-11,CpGisland,TRUE,U1,Pr-A
17038,cg23865761,0.000124391,0.0000229,5.426908293,0.000000116,gain,yes,-0.0000768,0.0000389,-1.972934736,0.049391156,neg,ns,0.027927794,0.011408115,2.448063886,0.014916763,pos,ns,1.826325412,-0.000462828,0.000392324,-1.179708286,0.239020778,neg,ns,0.11722628,Mllt3,Mllt3_Exon,4,88031557,88031606,88031605,88031606,50,-,GGAAGACGACTTTCTCCACAAAGTGCTGTATGTTACTGTGCTCCGGACCG,"Exon (Mllt3-201/Mllt3, exon 2 of 11)",4,87769925,88033364,263440,2,Mllt3-201,1758,Mllt3-201;Mllt3-203;Mllt3-205;Mllt3-206,Mllt3;Mllt3;Mllt3;Mllt3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,13,70122,ENSMUSG00000028496,conserved gene but different region,4,88031274,88031627,354,*,354,40,0.641242938,1.102803738,0.11299435,5.51E-33,CpGisland,TRUE,NA,NRS
19823,cg25404370,0.0000245,0.00000467,5.243882056,0.000000292,gain,yes,-0.0000156,0.00000793,-1.972845544,0.049401372,neg,ns,-0.000687798,0.002322782,-0.296109679,0.767344587,neg,ns,0.115009566,-0.0000212,0.0000799,-0.265911959,0.790483776,neg,ns,0.705709675,Wnk4,Wnk4_threeUTR,11,101276833,101276882,101276881,101276882,50,-,ATGCGAAGGAACTCTCTGAGTGGCAGCAGCACCGGCTCCCAGGAGCAGCG,3' UTR,11,101260567,101277409,16843,1,Wnk4-202,16266,Cntd1-202;Cntd1-201;Coa3-201;Coa3-202;Wnk4-202;Wnk4-201;Wnk4-203;Wnk4-204;Wnk4-205,Cntd1;Cntd1;Coa3;Coa3;Wnk4;Wnk4;Wnk4;Wnk4;Wnk4,-2130;-2214;2232;2061;0;0;0;11525;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,3,69847,ENSMUSG00000035112,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15158,cg14821110,-0.0000168,0.0000157,-1.068951177,0.285923317,loss,ns,0.0000527,0.0000267,1.972841474,0.049401838,pos,ns,-0.0000143,0.007819293,-0.001833617,0.998538166,neg,ns,0.000635331,0.000157525,0.000268905,0.585802294,0.558434613,pos,ns,0.33790517,Cerkl,Cerkl_Promoter,2,79459902,79459951,79459950,79459951,50,-,GGCTTGCGGCATAATCTTAATTAAGATAATTGATTCATATTGCACCTGCG,Promoter (3-4kb),2,79338569,79456785,118217,2,Cerkl-210,-3166,Cerkl-210;Neurod1-201,Cerkl;Neurod1,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,13,15,228094,ENSMUSG00000075256,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
2884,cg21397739,-0.0000133,0.00000448,-2.975832241,0.003151852,loss,ns,0.000015,0.00000761,1.972735136,0.04941402,pos,ns,-0.002841148,0.002230455,-1.273797596,0.203689352,neg,ns,0.691031673,0.000122206,0.0000767,1.593191296,0.112136356,pos,ns,0.947565926,Ehbp1,Ehbp1_Intron,11,22007679,22007728,22007679,22007680,50,-,CGCTCTATTTTAGCAGTTGGATGTATCTCACACTGGGCGCCATATGCTTC,"Intron (Ehbp1-201/Ehbp1, intron 22 of 23)",11,22005828,22285838,280011,2,Ehbp1-201,278110,Ehbp1-201;Ehbp1-202;Ehbp1-207;Otx1-202,Ehbp1;Ehbp1;Ehbp1;Otx1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,34,45,216565,ENSMUSG00000042302,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
8239,cg11822175,0.0000287,0.0000151,1.906958716,0.05745015,gain,ns,0.0000505,0.0000256,1.972723281,0.049415378,pos,ns,0.009760917,0.007495431,1.302248935,0.193798,pos,ns,0.712650709,0.000132864,0.000257767,0.51544068,0.606612486,pos,ns,0.40720569,Slf2,Slf2_Intergenic_upstream,19,44893855,44893904,44893903,44893904,50,-,CCTGTAGATCAATGCTAATACCAGGAGGCCCCGGAAGATGGATGGAACCG,Distal Intergenic,19,44931151,44983188,52038,1,Slf2-201,-37296,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,15,17,226151,ENSMUSG00000036097,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7027,cg00546693,0.00000196,0.00000295,0.663388456,0.507574807,gain,ns,-0.00000989,0.00000502,-1.972606673,0.04942874,neg,ns,-0.003254173,0.001469353,-2.214698048,0.027507752,neg,ns,1.560544897,0.0000279,0.0000505,0.551412189,0.581748373,pos,ns,0.078413449,Tfap2a,Tfap2a_Intron,13,40704190,40704239,40704190,40704191,50,+,CGGATGAAATTATGTCCTTCTCCGGGTGTGAAATTACCATGTTTATTAAT,"Intron (Gm9979-201/Gm9979-201, intron 1 of 1)",13,40716724,40728944,12221,2,Tfap2a-209,24705,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,57,21418,ENSMUSG00000021359,mapped to different genes,13,40703950,40704213,264,*,264,30,0.674242424,1.001897533,0.113636364,6.28E-25,CpGisland,TRUE,U13,Hc-P
5540,cg02299271,-0.00000204,0.00000168,-1.211817707,0.226505018,loss,ns,-0.00000564,0.00000286,-1.972340649,0.049459234,neg,ns,-0.000410055,0.000837906,-0.489380323,0.624918554,neg,ns,0.204176581,0.0000156,0.0000288,0.540465627,0.589264046,pos,ns,0.957674944,Pbx3,Pbx3_Exon,2,34224394,34224443,34224394,34224395,50,+,CGGCTGCTGACCTGTTCATATTTCTCCAGTTCTGTGTGATAGATTTGTCT,"Exon (Pbx3-202/Pbx3, exon 3 of 8)",2,34171457,34372038,200582,2,Pbx3-202,147595,Pbx3-202;Pbx3-201;Pbx3-210;Pbx3-206;Pbx3-207;Pbx3-209;Pbx3-204;Pbx3-205;Pbx3-203,Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,82,18516,ENSMUSG00000038718,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8406,cg17985090,0.00000957,0.0000116,0.827882746,0.408373782,gain,ns,0.0000387,0.0000196,1.972273665,0.049466915,pos,ns,0.012232505,0.005753836,2.125973669,0.034295541,pos,ns,1.464762338,-0.000511367,0.000197874,-2.584308632,0.010214527,neg,ns,0.385614213,Zeb2,Zeb2_Intron,2,45097485,45097534,45097533,45097534,50,-,CTGTAACTAGCAACAGCAAACATCCACTAAAACATAAAGTGCAATAATCG,"Intron (Zeb2-212/Zeb2, intron 3 of 10)",2,44983632,45117395,133764,2,Zeb2-212,19861,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219;Zeb2-211,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19982,cg14080612,-0.00000926,0.00000445,-2.080786398,0.038274227,loss,ns,0.0000149,0.00000756,1.972224657,0.049472535,pos,ns,-0.002152875,0.002214116,-0.972340369,0.33163932,neg,ns,0.479333984,0.00000572,0.0000761,0.075151739,0.940142456,pos,ns,0.914520664,9630041A04Rik,9630041A04Rik_Exon,9,101936169,101936218,101936169,101936170,50,+,CGGTAGGCGATGGCCTCTGGAGCTGTCCATCTCACAGGGATCTTCCCTCC,"Exon (Ephb1-201/Ephb1, exon 13 of 16)",9,101861841,101943228,81388,1,9630041A04Rik-204,74328,9630041A04Rik-204;9630041A04Rik-202;9630041A04Rik-203;9630041A04Rik-201;Ephb1-201;Ephb1-202;Ephb1-205;Ephb1-206;Ephb1-204,9630041A04Rik;9630041A04Rik;9630041A04Rik;9630041A04Rik;Ephb1;Ephb1;Ephb1;Ephb1;Ephb1,0;0;0;-2263;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,3,442798,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15753,cg02134923,0.0000117,0.0000178,0.659624606,0.509984496,gain,ns,-0.0000596,0.0000302,-1.972043795,0.049493281,neg,ns,0.007818937,0.008857383,0.882759308,0.378050347,pos,ns,0.422450359,-0.000519738,0.000304605,-1.706270012,0.088959329,neg,ns,0.471607182,Pkdcc,Pkdcc_Intergenic_upstream,17,83148465,83148514,83148513,83148514,50,+,ACACATTTCACTGCTATTTAAATAGCTGTTTTGCCAAACCAAACACAGCG,Distal Intergenic,17,83215292,83225070,9779,1,Pkdcc-204,-66778,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,10,106522,ENSMUSG00000024247,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6839,cg02968098,0.00000106,0.0000038,0.27980741,0.779811872,gain,ns,-0.0000127,0.00000646,-1.971681117,0.049534904,neg,ns,0.000675203,0.001893781,0.356537132,0.721680896,pos,ns,0.141654791,-0.00012791,0.0000651,-1.96400482,0.050422827,neg,ns,0.910989471,Nr6a1,Nr6a1_threeUTR,2,38727607,38727656,38727655,38727656,50,+,CACACAAAAGCATGTGCATCATGTTGAAGGCCATACATTCAACTCTGTCG,3' UTR,2,38723370,38927688,204319,2,Nr6a1-202,200032,Nr6a1-202;Nr6a1-210;Nr6a1-201,Nr6a1;Nr6a1;Nr6a1,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,12,14536,ENSMUSG00000063972,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13495,cg24876219,-0.00000982,0.00000694,-1.413996253,0.158366477,loss,ns,0.0000233,0.0000118,1.971513947,0.049554099,pos,ns,0.002760977,0.003455845,0.798929605,0.424942905,pos,ns,0.371669417,-0.000229936,0.000118846,-1.934732757,0.053932681,neg,ns,0.809198966,Vwc2l,Vwc2l_Intron,1,70840220,70840269,70840220,70840221,50,+,CGGCAGATGTCAAGCAAGGCCATTTCTTAAGTGGGTTCTTTGCAGAAGTG,"Intron (Vwc2l-201/Vwc2l, intron 3 of 3)",1,70725715,70885397,159683,1,Vwc2l-201,114505,Vwc2l-201;Vwc2l-203;Vwc2l-204,Vwc2l;Vwc2l;Vwc2l,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,6,320460,ENSMUSG00000045648,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24015,cg13130928,0.0000897,0.00000663,13.51926103,4.68E-33,gain,yes,0.0000222,0.0000113,1.971494002,0.04955639,pos,ns,0.012323612,0.003300624,3.73372122,0.000224455,pos,ns,3.648869779,-0.000463691,0.000113508,-4.085088846,0.0000562,neg,ns,0.092842685,Cux2,Cux2_Intron,5,121948606,121948655,121948654,121948655,50,-,CGCCAAATTTGAGGGTATTGATCAATAAATCAAATCAGGCCAATCAATCG,"Intron (Cux2-202/Cux2, intron 2 of 22)",5,121856366,122049851,193486,2,Cux2-202,101196,Cux2-202;Cux2-201;Cux2-207;Cux2-205;Cux2-203,Cux2;Cux2;Cux2;Cux2;Cux2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,21,13048,ENSMUSG00000042589,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22300,cg05629730,-0.00000887,0.00000405,-2.187335686,0.029464784,loss,ns,-0.0000136,0.00000689,-1.9708248,0.049633297,neg,ns,-0.004336563,0.002017627,-2.149338385,0.032381376,neg,ns,1.489704702,0.0000125,0.0000694,0.180417085,0.856943028,pos,ns,0.885095309,Setd5,Setd5_Exon,6,113109872,113109921,113109872,113109873,50,+,CGCCTTTGTGCAGCCCTGAATCTGTGGAGGCTAGTCCAGCAGTTAATGAG,"Exon (Setd5-201/Setd5, exon 3 of 22)",6,113077365,113153435,76071,1,Setd5-201,32507,Setd5-209;Setd5-201;Setd5-206;Setd5-205;Setd5-203;Setd5-212;Setd5-202;Setd5-204;Setd5-210;Setd5-214;Setd5-207,Setd5;Setd5;Setd5;Setd5;Setd5;Setd5;Setd5;Setd5;Setd5;Setd5;Setd5,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,19,72895,ENSMUSG00000034269,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21329,cg26127111,0.00000278,0.00000342,0.813203281,0.416725637,gain,ns,-0.0000115,0.00000582,-1.970741116,0.049642921,neg,ns,-0.003923354,0.001703619,-2.302952003,0.021943391,neg,ns,1.658696264,0.0000315,0.0000586,0.538319226,0.590742981,pos,ns,0.902374523,Nfat5,Nfat5_threeUTR,8,107339286,107339335,107339334,107339335,50,-,ATGCCGACAGTGCCAAAGCACCTCACTATGTGCTTTCTCAGCTTACCACG,3' UTR,8,107293470,107372227,78758,1,Nfat5-213,45816,Nfat5-213;Nfat5-214;Nfat5-206;Nfat5-211;Nfat5-203;Nfat5-201;Nfat5-209;Nfat5-205;Nfat5-202;Nfat5-207,Nfat5;Nfat5;Nfat5;Nfat5;Nfat5;Nfat5;Nfat5;Nfat5;Nfat5;Nfat5,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,13,17,54446,ENSMUSG00000003847,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18763,cg19291010,-0.00000561,0.00000171,-3.277810496,0.00116498,loss,ns,-0.00000573,0.00000291,-1.970614984,0.049657431,neg,ns,-0.003135529,0.000852142,-3.679584552,0.000275396,neg,ns,3.560041686,0.0000433,0.0000293,1.475981709,0.140963807,pos,ns,0.966284131,Bcl9,Bcl9_Exon,3,97215348,97215397,97215396,97215397,50,+,TTGGAATCCAGCTGGGGGTTTCCAGATGGGGACATCACTGTAGGGGGACG,"Exon (Bcl9-201/Bcl9, exon 5 of 10)",3,97203662,97227364,23703,2,Bcl9-201,11967,Bcl9-201;Bcl9-207;Bcl9-203;Bcl9-206;Bcl9-204;Bcl9-205;Bcl9-208,Bcl9;Bcl9;Bcl9;Bcl9;Bcl9;Bcl9;Bcl9,0;0;-1339;0;13449;12138;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,10,77578,ENSMUSG00000038256,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9804,cg14774801,-0.00000271,0.00000189,-1.434868952,0.152332523,loss,ns,0.00000631,0.0000032,1.970209897,0.049704053,pos,ns,0.00201024,0.000938295,2.142440524,0.03293668,pos,ns,1.482320182,-0.0000659,0.0000323,-2.042163466,0.041981263,neg,ns,0.960338746,Tbc1d5,Tbc1d5_Intron,17,50898082,50898131,50898130,50898131,50,+,ATCTACTTATGTTTGTCAGAACAGTGCATCCGTGACAAGTTGAAGTTCCG,"Intron (Tbc1d5-201/Tbc1d5, intron 13 of 21)",17,50733124,51179168,446045,2,Tbc1d5-201,281037,Tbc1d5-201;Tbc1d5-207;Tbc1d5-205;Tbc1d5-208;Tbc1d5-203,Tbc1d5;Tbc1d5;Tbc1d5;Tbc1d5;Tbc1d5,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,14,72238,ENSMUSG00000023923,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10149,cg00850663,0.00019085,0.0000173,11.01446802,4.96E-24,gain,yes,-0.000058,0.0000294,-1.969767663,0.049754992,neg,ns,0.022373893,0.008623943,2.594392576,0.009925998,pos,ns,2.003225825,-0.000872954,0.000296577,-2.943435395,0.003491066,neg,ns,0.463430903,Gm28308,Gm28308_Exon,6,52204240,52204289,52204240,52204241,50,+,CGAGTCCCTGAATTGCTCGCTCACGGAACTATGATCTCCATAATTATGCA,"Exon (Hoxa5-201/Hoxa5, exon 1 of 2)",6,52163359,52213339,49981,2,Gm28308-201,9050,Gm28308-201;Hoxa3-201;Hoxa3-203;Hoxa5-201;Hoxa6-201,Gm28308;Hoxa3;Hoxa3;Hoxa5;Hoxa6,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,30,103,,NA,mapped to different genes,6,52203658,52204321,664,*,664,70,0.680722892,0.922222222,0.105421687,5.32E-55,CpGisland,TRUE,U3,Pr-B
16730,cg07952250,-0.00000763,0.00000295,-2.586994649,0.010136949,loss,ns,0.00000987,0.00000501,1.969659813,0.049767422,pos,ns,0.002739852,0.001468717,1.865473242,0.063059565,pos,ns,1.200249028,-0.0000918,0.0000505,-1.817637501,0.07008478,neg,ns,0.952464497,Lrba,Lrba_Exon,3,86327616,86327665,86327664,86327665,50,+,GCGACCCTACTTCGAAATTCTCCCCAGTGCCCAGAGAGCATGGAGGTTCG,"Exon (Lrba-202/Lrba, exon 21 of 51)",3,86224680,86746712,522033,1,Lrba-202,102936,Lrba-202;Lrba-204;Lrba-201;Lrba-208,Lrba;Lrba;Lrba;Lrba,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,17,45,80877,ENSMUSG00000028080,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2697,cg04510441,-0.0000107,0.00000275,-3.905966614,0.000115234,loss,ns,-0.0000092,0.00000467,-1.969390588,0.049798461,neg,ns,-0.000481166,0.001367879,-0.351760899,0.725256568,neg,ns,0.139508329,0.000000762,0.000047,0.016200951,0.987084499,pos,ns,0.911729311,Ilf3,Ilf3_threeUTR,9,21400525,21400574,21400573,21400574,50,-,AATCAACTTTTTACTCCAATTTCCTCCAACTCCAAAACCCAAAGTGTCCG,3' UTR,9,21367871,21405360,37490,1,Ilf3-201,32654,Ilf3-201;Ilf3-203;Ilf3-206;Ilf3-213;Ilf3-202;Ilf3-204;Ilf3-208;Ilf3-216;Ilf3-211;Ilf3-214;Ilf3-212;Ilf3-205,Ilf3;Ilf3;Ilf3;Ilf3;Ilf3;Ilf3;Ilf3;Ilf3;Ilf3;Ilf3;Ilf3;Ilf3,0;0;0;0;0;0;0;0;0;0;0;-3059,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,5,11,16201,ENSMUSG00000032178,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11275,cg04080314,-0.00000711,0.00000281,-2.529457711,0.011919288,loss,ns,0.0000094,0.00000477,1.969326416,0.049805862,pos,ns,-0.002209391,0.001398231,-1.580132702,0.115096242,neg,ns,0.938938857,0.000123764,0.0000481,2.573864056,0.010521263,pos,ns,0.93565163,Gria1,Gria1_Exon,11,57310614,57310663,57310614,57310615,50,-,CGTAAACCTAGCGGTTTTGAAACTCAGTGAGCAAGGCGTCTTAGACAAGC,"Exon (Gria1-201/Gria1, exon 14 of 16)",11,57011810,57330244,318435,1,Gria1-201,298804,Gria1-201;Gria1-202;Gria1-204,Gria1;Gria1;Gria1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,13,14799,ENSMUSG00000020524,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10168,cg23994088,0.000197709,0.0000183,10.81330316,2.45E-23,gain,yes,-0.0000612,0.0000311,-1.969271422,0.049812205,neg,ns,0.023441106,0.009100068,2.575926425,0.010460051,pos,ns,1.980466209,-0.00086633,0.000312951,-2.768263412,0.005974689,neg,ns,0.18335508,Gm28308,Gm28308_Intron,6,52204766,52204815,52204814,52204815,50,-,TCGCAGTTCCATTAGGATGTACCAATTGTTAGGCCGTCAGCTGCCGATCG,"Intron (Hoxaas3-202/Hoxaas3-202, intron 1 of 2)",6,52163359,52213339,49981,2,Gm28308-201,8524,Gm28308-201;Hoxa3-201;Hoxa3-203;Hoxa5-201;Hoxa6-201,Gm28308;Hoxa3;Hoxa3;Hoxa5;Hoxa6,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,46,103,,NA,mapped to different genes,6,52204767,52204843,77,*,77,8,0.584415584,1.222222222,0.103896104,0.00000163,CpGisland,TRUE,U13,Hc-P
22827,cg22828044,-0.0000463,0.00000995,-4.655823311,0.00000479,loss,ns,-0.0000333,0.0000169,-1.969171612,0.049823719,neg,ns,0.023093817,0.004950311,4.665124212,0.00000459,pos,ns,5.337852865,-0.000132726,0.000170241,-0.779634963,0.436200572,neg,ns,0.752477689,Meis2,Meis2_Intron,2,115979909,115979958,115979909,115979910,50,+,CGAATGAGTCCCGCTTAATTTGGCAGTGATTATGCGGGTTGCTGGCCCTC,"Intron (Meis2-201/Meis2, intron 8 of 11)",2,115863064,116065047,201984,2,Meis2-201,85089,Meis2-201;Meis2-203;Meis2-205;Meis2-206;Meis2-204;Meis2-202;Meis2-216;Meis2-217,Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,45,97,17536,ENSMUSG00000027210,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1710,cg05745611,-0.00000335,0.00000344,-0.975124539,0.330258785,loss,ns,0.0000115,0.00000584,1.968890415,0.04985617,pos,ns,0.002830199,0.001711368,1.653764296,0.099187621,pos,ns,1.003542528,-0.0000768,0.0000589,-1.304982973,0.19286648,neg,ns,0.93025675,Tle4,Tle4_Intergenic_upstream,19,14659671,14659720,14659671,14659672,50,+,CGGTGGGAGCGAGAATAAATAAAGATCCTTCAGGCACTTTCTCATTTATG,Distal Intergenic,19,14448150,14598051,149902,2,Tle4-202,-61620,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,29,21888,ENSMUSG00000024642,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22026,cg00658736,-0.00000996,0.00000801,-1.243179663,0.214741031,loss,ns,0.0000268,0.0000136,1.968861111,0.049859552,pos,ns,0.008626595,0.003988601,2.16281234,0.031319889,pos,ns,1.504179781,-0.000279699,0.000137168,-2.039106577,0.042287282,neg,ns,0.881698949,Elavl4,Elavl4_Exon,4,110206342,110206391,110206390,110206391,50,-,TGGGCTTTGTTGGTTTTAAAGGAAACTTGCAACACTCTGTCTCCCAGGCG,"Exon (Elavl4-204/Elavl4, exon 7 of 7)",4,110203722,110287527,83806,2,Elavl4-204,81136,Elavl4-204;Elavl4-201;Elavl4-203;Elavl4-202;Elavl4-205;Elavl4-206;Elavl4-207;Elavl4-211,Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,36,15572,ENSMUSG00000028546,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2982,cg25368206,-0.00000814,0.00000277,-2.943552319,0.003489784,loss,ns,0.00000926,0.0000047,1.968836527,0.04986239,pos,ns,-0.000618276,0.001377189,-0.44894052,0.653788236,neg,ns,0.184562898,0.0000155,0.0000474,0.327136476,0.743785451,pos,ns,0.931095996,Lrmda,Lrmda_Intron,14,22250220,22250269,22250220,22250221,50,+,CGGCATGTGGAAATTGACTTCCCTTGATTTAAGCTGCTGTGTCTTTTCAT,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,230508,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206,Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26586,cg10816626,0.0000116,0.0000296,0.391057699,0.696023217,gain,ns,0.000099,0.0000503,1.968730066,0.049874682,pos,ns,0.029629559,0.014731745,2.011272947,0.045161914,pos,ns,1.345227664,-0.00103423,0.000506623,-2.041417233,0.042055792,neg,ns,0.281292297,Casz1,Casz1_Intron,4,148940881,148940930,148940929,148940930,50,+,TCTGCCACTTTCCCTCAGCATTAACAGAGTCTTTAATAAAAGCCTAAGCG,"Intron (Casz1-201/Casz1, intron 11 of 15)",4,148804429,148945129,140701,1,Casz1-201,136452,Casz1-201;Casz1-202;Casz1-204,Casz1;Casz1;Casz1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,94,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
15700,cg14076002,-0.00000235,0.00000279,-0.840589637,0.40122574,loss,ns,0.00000934,0.00000475,1.968716622,0.049876235,pos,ns,0.004262308,0.001390285,3.065779616,0.002362103,pos,ns,2.626701211,-0.000138322,0.0000478,-2.893054671,0.004085338,neg,ns,0.9476805,Phip,Phip_Exon,9,82886618,82886667,82886666,82886667,50,+,TAACCTGTAAAACCTGTTTTCCAGTCTTTGTTTAATTGTACTTAGATCCG,"Exon (Phip-201/Phip, exon 31 of 40)",9,82866159,82975516,109358,2,Phip-201,88849,Phip-201;Phip-213;Phip-208,Phip;Phip;Phip,0;0;5521,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,13,83946,ENSMUSG00000032253,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19485,cg13330199,-0.0000717,0.0000248,-2.897115653,0.00403422,loss,ns,0.0000828,0.0000421,1.968693876,0.049878861,pos,ns,-0.008363607,0.012324662,-0.678607366,0.497892945,neg,ns,0.302864028,0.000956433,0.000423844,2.256568646,0.024731287,pos,ns,0.406569635,Foxn3,Foxn3_Intron,12,99406433,99406482,99406433,99406434,50,+,CGAGTAATGACAACCACAAAACTCATTTAAAGTCTGAAAAGGTGACTAAT,"Intron (Foxn3-202/Foxn3, intron 1 of 5)",12,99195094,99450074,254981,2,Foxn3-202,43592,Foxn3-202;Foxn3-207;Foxn3-208;Foxn3-205;Foxn3-214,Foxn3;Foxn3;Foxn3;Foxn3;Foxn3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,17,71375,ENSMUSG00000033713,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11109,cg05081855,-0.0000157,0.00000605,-2.590177273,0.01004571,loss,ns,0.0000202,0.0000103,1.968334693,0.049920354,pos,ns,0.007529317,0.003009297,2.502018231,0.012863734,pos,ns,1.890632961,-0.0003234,0.000103489,-3.124952174,0.001946603,neg,ns,0.873855434,Nkx2-9,Nkx2-9_Intergenic_upstream,12,56624548,56624597,56624596,56624597,50,-,AAGTGTGTCTCATTTACCCAATTATAAACAGCTGTCTGAGAGCAATTACG,Distal Intergenic,12,56611389,56613284,1896,2,Nkx2-9-201,-11313,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,3,18094,ENSMUSG00000058669,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22305,cg25620557,-0.00000394,0.00000188,-2.092113512,0.037241553,loss,ns,-0.00000629,0.0000032,-1.968307479,0.049923498,neg,ns,-0.000722197,0.000936152,-0.771452749,0.441026253,neg,ns,0.355535557,-0.0000163,0.0000322,-0.506737156,0.612699488,neg,ns,0.966611476,Setd5,Setd5_Exon,6,113110375,113110424,113110375,113110376,50,+,CGATCATCCCTCGTTCTGACCTGAATGGCCTGCCGTCGCCTGTAGAGGAA,Promoter (<=1kb),6,113110417,113113689,3273,1,Setd5-214,0,Setd5-209;Setd5-201;Setd5-206;Setd5-205;Setd5-203;Setd5-212;Setd5-202;Setd5-204;Setd5-210;Setd5-214;Setd5-207,Setd5;Setd5;Setd5;Setd5;Setd5;Setd5;Setd5;Setd5;Setd5;Setd5;Setd5,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,19,72895,ENSMUSG00000034269,conserved gene but different region,6,113110328,113110442,115,*,115,9,0.652173913,0.798611111,0.07826087,0.00000296,CpGisland,TRUE,U10,Tr-S
17062,cg17589788,-0.0000982,0.0000088,-11.15095739,1.66E-24,loss,yes,0.0000294,0.000015,1.968276079,0.049927127,pos,ns,0.010030965,0.004382183,2.289033725,0.02274959,pos,ns,1.643026416,-0.0000945,0.000150703,-0.627062133,0.531080053,neg,ns,0.811535584,Mef2d,Mef2d_Exon,3,88158243,88158292,88158291,88158292,50,+,AATGTGAGAGCCCTGAGGTGGACGAGGTGTTTGCCCTGACCCCCCAGACG,"Exon (Mef2d-202/Mef2d, exon 4 of 11)",3,88142372,88172086,29715,1,Mef2d-201,15871,Mef2d-201;Mef2d-204;Mef2d-202;Mef2d-203;Mef2d-206;Mef2d-205,Mef2d;Mef2d;Mef2d;Mef2d;Mef2d;Mef2d,0;0;0;0;15669;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,10,17261,ENSMUSG00000001419,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7875,cg19756249,-0.0000201,0.00000981,-2.047359583,0.04146541,loss,ns,-0.0000328,0.0000167,-1.968046714,0.049953642,neg,ns,-0.003594484,0.004884021,-0.735968239,0.462306532,neg,ns,0.335069971,-0.00010235,0.000167961,-0.60936924,0.542726062,neg,ns,0.797725465,Runx2,Runx2_Intron,17,44578022,44578071,44578070,44578071,50,-,AATGTGCTTGGTTAATTGGAGTAATTAGTAGTCTTTTCATTCCAAGGCCG,"Intron (Runx2-212/Runx2, intron 5 of 5)",17,44495987,44736176,240190,2,Runx2-212,158105,Runx2-212;Runx2-214,Runx2;Runx2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,20,12393,ENSMUSG00000039153,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5018,cg06227366,-0.00000213,0.00000231,-0.922791856,0.356833339,loss,ns,0.00000772,0.00000392,1.967890586,0.049971696,pos,ns,0.002291706,0.001149099,1.99435005,0.046989352,pos,ns,1.328000546,-0.0000619,0.0000395,-1.565741705,0.118429291,neg,ns,0.946467287,Wdr33,Wdr33_Exon,18,31833671,31833720,31833719,31833720,50,-,GGCAGTCGAACATGAACAACGTCAAGATGTTCCAGGCACATAAGGAGGCG,"Exon (Wdr33-202/Wdr33, exon 6 of 8)",18,31804090,31841642,37553,1,Wdr33-202,29581,Wdr33-204;Wdr33-202;Wdr33-207;Wdr33-201;Wdr33-205,Wdr33;Wdr33;Wdr33;Wdr33;Wdr33,29581;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,6,74320,ENSMUSG00000024400,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6313,cg17243237,-0.000026,0.00000847,-3.07158236,0.002318013,loss,ns,0.0000283,0.0000144,1.96776955,0.049985697,pos,ns,0.008291342,0.004217213,1.966071479,0.050182466,pos,ns,1.299447998,-0.00043408,0.00014503,-2.993040955,0.002984207,neg,ns,0.830759798,Tenm2,Tenm2_Intron,11,36843325,36843374,36843373,36843374,50,+,AAATCCTTATACTTCAACTTTAATATGTTCTTTCTGAAGAAGTTGCCACG,"Intron (Tenm2-202/Tenm2, intron 4 of 30)",11,36006656,37235882,1229227,2,Tenm2-202,392508,Tenm2-202;Tenm2-208;Tenm2-201;Tenm2-204,Tenm2;Tenm2;Tenm2;Tenm2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,47,84,23964,ENSMUSG00000049336,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27217,cg13220779,-0.00000365,0.00000311,-1.173666287,0.24142964,loss,ns,0.0000104,0.00000529,1.967610585,0.05000409,pos,ns,0.003200555,0.001549444,2.065614796,0.039695646,pos,ns,1.40125713,-0.00011188,0.0000533,-2.099642045,0.036568453,neg,ns,0.931349976,Rc3h1,Rc3h1_fiveUTR,1,160930091,160930140,160930139,160930140,50,-,CGTGAATTGTAACTCCAGAAGCAATGCCTGTACAAGCTCCACAATGGACG,5' UTR,1,160906418,160974978,68561,1,Rc3h1-202,23673,Rc3h1-202;Rc3h1-204;Rc3h1-201,Rc3h1;Rc3h1;Rc3h1,0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,8,381305,ENSMUSG00000040423,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21068,cg10721494,-0.00000816,0.00000591,-1.381563636,0.16810061,loss,ns,0.0000197,0.00001,1.967585946,0.050006941,pos,ns,0.00814614,0.002939286,2.771468573,0.005917617,pos,ns,2.227853176,-0.000252316,0.000101082,-2.496151607,0.013074089,neg,ns,0.911697249,Ddx42,Ddx42_Exon,11,106230289,106230338,106230337,106230338,50,-,AACATTTGCAGGGAAGTTTGTTTCTCCGCTTGTTTTTCCAGGGGTATTCG,"Exon (Ddx42-201/Ddx42, exon 5 of 18)",11,106216926,106249139,32214,1,Ddx42-201,13363,Ddx42-201,Ddx42,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,72047,ENSMUSG00000020705,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23967,cg27310935,-0.00000365,0.00000137,-2.654651179,0.008348928,loss,ns,0.00000459,0.00000234,1.967479323,0.050019282,pos,ns,0.002404876,0.000684103,3.515372997,0.000504645,pos,ns,3.297013788,-0.0000662,0.0000235,-2.814268686,0.005201407,neg,ns,0.962030353,Erp29,Erp29_threeUTR,5,121430619,121430668,121430667,121430668,50,-,TATTCAAGCTTACAAATATGGTGCATTTGAGAAGATCCCAGAGTTTATCG,3' UTR,5,121428590,121452487,23898,2,Erp29-204,21819,Erp29-204;Naa25-201;Naa25-205;Naa25-202;Naa25-203,Erp29;Naa25;Naa25;Naa25;Naa25,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,11,11,67397,ENSMUSG00000029616,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8545,cg06113532,0.0000707,0.0000126,5.634233199,3.95E-08,gain,yes,-0.000042,0.0000213,-1.967141606,0.050058386,neg,ns,0.011847409,0.006248315,1.896096548,0.058876988,pos,ns,1.230054413,-0.00037169,0.000214879,-1.729763954,0.084667806,neg,ns,0.539871061,Btrc,Btrc_Exon,19,45329856,45329905,45329856,45329857,50,-,CGCTGGTGAGCGGGGTCACTCAGTAGTGTGCACATCAGGGTGAAATCCTT,"Exon (Gm28578-209/Gm28578-209, exon 7 of 7)",19,45363734,45507736,144003,1,Btrc-204,-33878,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,30,98,12234,ENSMUSG00000025217,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22121,cg23075174,0.0000107,0.000012,0.892106909,0.373027569,gain,ns,-0.0000401,0.0000204,-1.967139115,0.050058675,neg,ns,0.002903532,0.005971341,0.486244552,0.627137336,pos,ns,0.202637343,-0.0000669,0.000205354,-0.325584035,0.744958742,neg,ns,0.347964035,Eif4g2,Eif4g2_Exon,7,111080269,111080318,111080269,111080270,50,-,CGTGCAGGAATCCATTTCTGAGCGTTTTGCCCTGGGGTTTTCCCCAGGAA,"Exon (Eif4g2-213/Eif4g2, exon 4 of 22)",7,111067750,111083030,15281,2,Eif4g2-213,2712,Eif4g2-213;Eif4g2-206;Eif4g2-204;Eif4g2-211;Eif4g2-210;Eif4g2-209;Eif4g2-203;Eif4g2-201;Eif4g2-212;Eif4g2-205,Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2,0;0;-4884;-4060;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,20,22,13690,ENSMUSG00000005610,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U4,Pr-F
7215,cg08021572,0.00000397,0.0000035,1.13507279,0.257221676,gain,ns,-0.0000117,0.00000595,-1.966996217,0.050075229,neg,ns,-0.003391801,0.001741695,-1.947414352,0.05238771,neg,ns,1.280770587,0.0000979,0.0000599,1.634848767,0.103095747,pos,ns,0.894251456,Gria3,Gria3_Exon,X,41654924,41654973,41654972,41654973,50,-,GGTCAGCCTCAATGTCACCACAACCGGGTACCCTTAGTGACGAGTAATCG,"Exon (Gria3-202/Gria3, exon 15 of 17)",20,41401128,41676585,275458,1,Gria3-202,253796,Gria3-202;Gria3-201;Gria3-208;Gria3-206;Gria3-209,Gria3;Gria3;Gria3;Gria3;Gria3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,26,53623,ENSMUSG00000001986,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14941,cg23983453,-0.0000223,0.00000963,-2.316925276,0.021159243,loss,ns,0.0000322,0.0000164,1.966860516,0.050090953,pos,ns,0.003451005,0.004793324,0.719960797,0.472091594,pos,ns,0.325973732,-0.00000224,0.000164842,-0.013558857,0.989190651,neg,ns,0.218650467,Nr2f1,Nr2f1_Intron,13,78193706,78193755,78193754,78193755,50,+,CATACAAATGAGATGCTCTTGTCTAAATAAATTATCTGCTGTTCAGATCG,"Intron (Nr2f1-201/Nr2f1, intron 2 of 2)",13,78188973,78199757,10785,2,Nr2f1-201,6002,Nr2f1-201;Nr2f1-205;Nr2f1-203;Nr2f1-202;Nr2f1-204;Nr2f1-206,Nr2f1;Nr2f1;Nr2f1;Nr2f1;Nr2f1;Nr2f1,0;0;0;0;-3263;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,55,13865,ENSMUSG00000069171,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
9886,cg21110286,0.000000497,0.00000241,0.20640326,0.836611419,gain,ns,-0.00000805,0.00000409,-1.966571198,0.050124492,neg,ns,-0.000220984,0.001198536,-0.184378016,0.85383747,neg,ns,0.068624791,-0.0000993,0.0000412,-2.410317617,0.016520586,neg,ns,0.944673848,Gm46574,Gm46574_Intergenic_downstream,17,51362451,51362500,51362499,51362500,50,-,ACAGCTGATTCTTTTGCAGTCTGCAAGATGGACCCGACCTAAGCCAATCG,Distal Intergenic,17,51484292,51484721,430,2,Gm46574-201,122270,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,19,108168316,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19123,cg04080945,-0.00000231,0.00000236,-0.979750541,0.327973252,loss,ns,0.00000788,0.00000401,1.966384739,0.050146117,pos,ns,0.002811669,0.001174668,2.393586927,0.017278875,pos,ns,1.762484539,-0.000102515,0.0000404,-2.53770376,0.011647799,neg,ns,0.942336363,Gm49017,Gm49017_Intergenic_upstream,14,98536605,98536654,98536605,98536606,50,+,CGGCACTCAGTACATTAATTCACGCTGAAGTCCGGTAAATCAAAATTATA,Distal Intergenic,14,98519416,98519700,285,2,Gm49017-201,-16905,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,11,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18614,cg04638909,0.00000306,0.00000178,1.711677549,0.087956274,gain,ns,-0.00000596,0.00000303,-1.966216436,0.050165644,neg,ns,-0.000913559,0.000888372,-1.028352307,0.304585831,neg,ns,0.516290303,0.0000553,0.0000306,1.808714038,0.071464211,pos,ns,0.057680133,Hoxb4,Hoxb4_fiveUTR,11,96318760,96318809,96318808,96318809,50,+,CCAGAAATTAATGGCTATGAGTTCTTTTTTGATCAACTCAAACTATGTCG,Promoter (<=1kb),11,96318267,96321638,3372,1,Hoxb4-201,493,Hoxb3-202;Hoxb4-201,Hoxb3;Hoxb4,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,6,15412,ENSMUSG00000038692,mapped to different genes,11,96318808,96319477,670,*,670,62,0.670149254,0.845339845,0.092537313,5.15E-45,CpGisland,TRUE,U3,Pr-B
14047,cg00696175,0.000000445,0.00000774,0.057535687,0.954155547,gain,ns,0.0000259,0.0000132,1.966087626,0.050180592,pos,ns,0.000662447,0.00385368,0.17189984,0.863628434,pos,ns,0.063673067,0.00015853,0.000132528,1.196201034,0.232532224,pos,ns,0.860086695,Lnpk,Lnpk_Intergenic_downstream,2,74451214,74451263,74451262,74451263,50,+,GATTAACTACAAATGAAGTACTGTACGCCTATCAAAGCAATTGTTCATCG,Distal Intergenic,2,74520341,74533106,12766,2,Lnpk-204,81843,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,15,16,69605,ENSMUSG00000009207,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13930,cg20705518,-0.00000259,0.00000224,-1.156790509,0.248248583,loss,ns,0.00000747,0.0000038,1.966068659,0.050182794,pos,ns,0.00117889,0.00111266,1.059524704,0.290185716,pos,ns,0.537323969,0.0000538,0.0000383,1.405264178,0.160944069,pos,ns,0.053325424,Chd2,Chd2_Exon,7,73538012,73538061,73538060,73538061,50,+,CTTCCTGCTGTTTGGCGAGTACACAGTGCAATGCAGTATGTCTGTCAGCG,"Exon (Gm44686-201/Gm44686-201, exon 1 of 4)",7,73426638,73541746,115109,2,Chd2-203,3685,Chd2-203;Chd2-201;Chd2-204;Chd2-207;Chd2-208;Chd2-216;Chd2-214,Chd2;Chd2;Chd2;Chd2;Chd2;Chd2;Chd2,0;0;-391;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,16,244059,ENSMUSG00000078671,conserved gene but different region,7,73537674,73538066,393,*,393,37,0.638676845,0.941530692,0.094147583,2.15E-27,CpGisland,TRUE,U1,Pr-A
26587,cg19223875,0.00000787,0.0000256,0.307183224,0.758910166,gain,ns,0.0000855,0.0000435,1.965812325,0.050212554,pos,ns,0.022137722,0.012748467,1.736500762,0.08346876,pos,ns,1.078476038,-0.000716982,0.000438419,-1.635381387,0.102984043,neg,ns,0.201703823,Casz1,Casz1_Intron,4,148940897,148940946,148940945,148940946,50,+,AGCATTAACAGAGTCTTTAATAAAAGCCTAAGCGGCAGCCCCACAAATCG,"Intron (Casz1-201/Casz1, intron 11 of 15)",4,148804429,148945129,140701,1,Casz1-201,136468,Casz1-201;Casz1-202;Casz1-204,Casz1;Casz1;Casz1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,94,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
2728,cg10982864,0.00000136,0.00000406,0.336125119,0.737003913,gain,ns,-0.0000136,0.0000069,-1.965682789,0.050227599,neg,ns,-0.00073643,0.002020242,-0.364525565,0.715714117,neg,ns,0.145260416,0.0000463,0.0000695,0.666765159,0.505418099,pos,ns,0.896815871,Kat6b,Kat6b_Exon,14,21625395,21625444,21625443,21625444,50,-,GCACTCTTTGATGGGCTTTCTCATATCTATACCACTCAGGGACAGTCTCG,"Exon (Kat6b-214/Kat6b, exon 6 of 16)",14,21499770,21672071,172302,1,Kat6b-206,125625,Kat6b-211;Kat6b-206;Kat6b-204;Kat6b-201;Kat6b-202;Kat6b-208;Kat6b-210;Kat6b-203;Kat6b-214;Kat6b-205;Kat6b-213,Kat6b;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,21,54169,ENSMUSG00000021767,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15412,cg24268851,0.000000328,0.00000329,0.099565474,0.92075366,gain,ns,0.000011,0.00000559,1.965551412,0.050242861,pos,ns,0.003836539,0.001637987,2.342227374,0.019801611,pos,ns,1.703299481,-0.000141321,0.0000563,-2.508800511,0.012624301,neg,ns,0.934825787,Atp9b,Atp9b_Intron,18,80812886,80812935,80812934,80812935,50,-,AATGAACACAATAATTGCCTGTATAATCTAAAATGCTACTAATGGCAACG,"Intron (Atp9b-201/Atp9b, intron 11 of 29)",18,80734141,80933983,199843,2,Atp9b-201,121048,Atp9b-201;Atp9b-212;Atp9b-209;Atp9b-207;Atp9b-213;Atp9b-202;Atp9b-204,Atp9b;Atp9b;Atp9b;Atp9b;Atp9b;Atp9b;Atp9b,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,4,50771,ENSMUSG00000024566,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15282,cg24516716,-0.00000535,0.00000536,-0.999274618,0.318441033,loss,ns,-0.0000179,0.0000091,-1.965212747,0.050282223,neg,ns,0.020522793,0.002666275,7.697178447,1.88E-13,pos,yes,12.72675454,-0.000566663,0.0000917,-6.18000812,2.01E-09,neg,yes,0.901687463,Actn1,Actn1_Exon,12,80170709,80170758,80170757,80170758,50,+,AACCCAAGCTGATGAGGCAGGCTTTGAACTCCTCGGGACCCAGTGTGCCG,"Exon (Actn1-201/Actn1, exon 19 of 21)",12,80167547,80260371,92825,2,Actn1-201,89613,Actn1-201;Actn1-206;Actn1-202;Actn1-205,Actn1;Actn1;Actn1;Actn1,0;0;0;-558,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,10,109711,ENSMUSG00000015143,conserved gene and region,12,80170742,80170941,200,*,200,12,0.7,0.653061225,0.06,0.000000585,CpGisland,TRUE,U10,Tr-S
7208,cg08448119,0.00000306,0.00000244,1.254113502,0.210745591,gain,ns,0.00000814,0.00000414,1.965112429,0.050293887,pos,ns,0.00094567,0.00121412,0.778893849,0.4366364,pos,ns,0.359880062,0.0000241,0.0000418,0.578168308,0.563570249,pos,ns,0.945924074,Gria3,Gria3_Exon,X,41654756,41654805,41654756,41654757,50,-,CGATTTCCTAAGCATTTGTGCATTTTCTTACAAGTTATGTTTTATCGTTT,"Exon (Gria3-208/Gria3, exon 13 of 15)",20,41401128,41676585,275458,1,Gria3-202,253628,Gria3-202;Gria3-201;Gria3-208;Gria3-206;Gria3-209,Gria3;Gria3;Gria3;Gria3;Gria3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,26,53623,ENSMUSG00000001986,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4239,cg06675828,-0.00000363,0.00000504,-0.721773619,0.470977722,loss,ns,0.0000168,0.00000856,1.96482389,0.05032745,pos,ns,0.004609711,0.002506556,1.839061892,0.066862368,pos,ns,1.174818245,-0.000170598,0.0000862,-1.979095155,0.048689864,neg,ns,0.921099547,Rfx3,Rfx3_Exon,19,27837445,27837494,27837445,27837446,50,-,CGTCAGACTTTTGCAGCGTCTCAATCGCCATTTCAATCTGATAATAGATG,"Exon (Rfx3-202/Rfx3, exon 6 of 18)",19,27761721,27982948,221228,2,Rfx3-202,145454,Rfx3-202;Rfx3-201;Rfx3-208;Rfx3-203;Rfx3-204;Rfx3-206;Rfx3-205,Rfx3;Rfx3;Rfx3;Rfx3;Rfx3;Rfx3;Rfx3,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,15,19726,ENSMUSG00000040929,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6871,cg21793027,0.00000443,0.00000553,0.802199661,0.423052,gain,ns,0.0000184,0.00000939,1.964725498,0.050338899,pos,ns,-0.003074861,0.002750235,-1.118036036,0.264417269,neg,ns,0.577710184,0.000102614,0.0000946,1.084934861,0.27879351,pos,ns,0.922275574,Tusc3,Tusc3_Exon,8,39096922,39096971,39096970,39096971,50,+,CAGTGTATAGTCTTTGCTATGACTTCTGGCCAGATGTGGAACCATATCCG,"Exon (Tusc3-203/Tusc3, exon 6 of 10)",8,39005845,39165114,159270,1,Tusc3-203,91077,Tusc3-203;Tusc3-201;Tusc3-202;Tusc3-206;Tusc3-205,Tusc3;Tusc3;Tusc3;Tusc3;Tusc3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,80286,ENSMUSG00000039530,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19340,cg10528602,-0.0000144,0.00000301,-4.772568272,0.00000281,loss,ns,0.00001,0.00000511,1.964333158,0.050384575,pos,ns,-0.000607426,0.00149654,-0.405886718,0.685105851,neg,ns,0.164242323,-0.0000703,0.0000515,-1.365516374,0.173080805,neg,ns,0.940502884,Cdh8,Cdh8_threeUTR,8,99030620,99030669,99030620,99030621,50,-,CGGGGACCCCAGTCACTGAGGTAGTCAAAATTCTGGTCTGAGTCTGATGT,3' UTR,8,99024471,99416427,391957,2,Cdh8-207,385758,Cdh8-207;Cdh8-204;Cdh8-201;Cdh8-206;Cdh8-203,Cdh8;Cdh8;Cdh8;Cdh8;Cdh8,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,16,12564,ENSMUSG00000036510,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1080,cg17383678,0.0000527,0.00000689,7.655374972,2.47E-13,gain,yes,0.000023,0.0000117,1.964238373,0.050395615,pos,ns,0.008793705,0.003429023,2.564492884,0.010803455,pos,ns,1.966437349,-0.000149312,0.000117924,-1.26617472,0.206401175,neg,ns,0.547823982,Gm14515,Gm14515_Intergenic_upstream,X,11494585,11494634,11494633,11494634,50,-,CCCACGTGAGGGGTCCTCACCCCAGCTGGGGATTTGGGTAATCAGGGACG,Distal Intergenic,20,11601354,11601569,216,1,Gm14515-201,-106769,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,21,28,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2121,cg23939037,0.00000334,0.00000556,0.601086805,0.548221425,gain,ns,0.0000185,0.00000944,1.964131642,0.050408049,pos,ns,0.004096889,0.002766443,1.480923344,0.139642647,pos,ns,0.854981929,0.0000184,0.0000951,0.193754016,0.846495389,pos,ns,0.116321171,Bhlhe22,Bhlhe22_Promoter,3,18054048,18054097,18054048,18054049,50,+,CGGCTCTAAGTAGGGCTTTTAGTGTGCTCATTGATGAGTGAAAGTCGCCA,Promoter (<=1kb),3,18054174,18057517,3344,1,Bhlhe22-201,-77,Bhlhe22-201,Bhlhe22,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,6,22,59058,ENSMUSG00000025128,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
14984,cg02351382,0.00000442,0.0000107,0.41246087,0.68028675,gain,ns,0.0000358,0.0000182,1.963878727,0.050437523,pos,ns,0.008934717,0.005335771,1.674494034,0.095042046,pos,ns,1.022084225,-0.0000844,0.000183497,-0.460075694,0.645784411,neg,ns,0.764416039,Ttc29,Ttc29_Intron,8,78320194,78320243,78320242,78320243,50,+,ACCTTGATACACAAATATTCTGCACTGTTTCATTCTCATTCTTTGGACCG,"Intron (Ttc29-201/Ttc29, intron 10 of 13)",8,78213342,78394326,180985,1,Ttc29-201,106852,Ttc29-201;Ttc29-202,Ttc29;Ttc29,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,3,73301,ENSMUSG00000037101,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1651,cg23446297,-0.00000177,0.00000354,-0.49944243,0.617822006,loss,ns,0.0000118,0.00000602,1.963646967,0.050464545,pos,ns,0.00032649,0.00176406,0.185078653,0.853288372,pos,ns,0.068904172,0.0000302,0.0000607,0.497595148,0.619122191,pos,ns,0.505804806,Hivep2,Hivep2_Intron,10,14017954,14018003,14018002,14018003,50,+,TCCTACCATACATTCTATCAGTGAGTGACTTATGATTGATGGGAACCACG,"Intron (Hivep2-204/Hivep2, intron 2 of 12)",10,13966075,14150589,184515,1,Hivep2-204,51879,Hivep2-204;Hivep2-201;Hivep2-205;Hivep2-203;Hivep2-206,Hivep2;Hivep2;Hivep2;Hivep2;Hivep2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,9,15273,ENSMUSG00000015501,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25351,cg03033070,0.00000554,0.00000357,1.55036457,0.122074307,gain,ns,0.0000119,0.00000607,1.963517763,0.050479614,pos,ns,0.00326231,0.001777917,1.834905852,0.067477706,pos,ns,1.170839692,-0.0000834,0.0000611,-1.363721491,0.17364466,neg,ns,0.080387969,Grhl3,Grhl3_Intron,4,135570373,135570422,135570421,135570422,50,-,TTTGCTCCTGGCAATCATGGTTTCGACCACAAAACCACAGCGGGGAGGCG,"Intron (Grhl3-201/Grhl3, intron 1 of 15)",4,135541888,135573630,31743,2,Grhl3-201,3208,Grhl3-201,Grhl3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,230824,ENSMUSG00000037188,conserved gene and region,4,135570193,135570472,280,*,280,22,0.592857143,0.943627451,0.078571429,9.57E-15,CpGisland,TRUE,U3,Pr-B
23216,cg21612167,0.0000304,0.00000455,6.671135685,1.17E-10,gain,yes,-0.0000152,0.00000774,-1.962860132,0.050556375,neg,ns,-0.000159105,0.002266378,-0.070202184,0.944078,neg,ns,0.024992122,0.000195672,0.0000779,2.51052766,0.012563965,pos,ns,0.111597744,Rnf220,Rnf220_fiveUTR,4,117496926,117496975,117496974,117496975,50,-,TCAGCGCTGGATCTAATCAGTGAATGAGCCTCCACTCTCCCAGGGACTCG,Promoter (<=1kb),4,117306058,117496949,190892,2,Rnf220-207,0,Rnf220-201;Rnf220-207;Rnf220-204,Rnf220;Rnf220;Rnf220,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,152,66743,ENSMUSG00000028677,conserved gene and region,4,117496974,117497027,54,*,54,8,0.666666667,1.5,0.148148148,9.03E-08,CpGisland,TRUE,U3,Pr-B
11950,cg15252084,-0.00000474,0.00000357,-1.328715108,0.184919192,loss,ns,0.0000119,0.00000606,1.962816594,0.05056146,pos,ns,0.004563691,0.001776685,2.568655404,0.010677285,pos,ns,1.971539146,-0.000140438,0.0000611,-2.298498112,0.022198616,neg,ns,0.932746961,Psmd14,Psmd14_Intron,2,61794997,61795046,61795045,61795046,50,+,GTGAATAGCCACAAACATTTTCAGTGCTTTTTTGTTGGTTGAGTAAACCG,"Intron (Psmd14-201/Psmd14, intron 10 of 11)",2,61711694,61800376,88683,1,Psmd14-201,83303,Psmd14-201;Psmd14-208;Psmd14-202,Psmd14;Psmd14;Psmd14,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,9,59029,ENSMUSG00000026914,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13999,cg15214797,0.0000106,0.00000914,1.16165347,0.24626988,gain,ns,0.0000305,0.0000155,1.962655309,0.050580303,pos,ns,0.006150354,0.004546757,1.352690146,0.177140426,pos,ns,0.751682314,0.00011122,0.000156363,0.711297512,0.477434759,pos,ns,0.145155419,Gm13668,Gm13668_Intergenic_upstream,2,74129439,74129488,74129487,74129488,50,-,GTGCATCTGTGTGAGTTAGACTTCTCTGATGAAAGCATAAGGCAGACGCG,Distal Intergenic,2,73959669,73960669,1001,2,Gm13668-201,-168819,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,18,20,667729,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1021,cg19647473,0.0000813,0.00000709,11.46516212,1.32E-25,gain,yes,-0.0000237,0.0000121,-1.962438648,0.050605624,neg,ns,0.006528205,0.00353102,1.848815908,0.06543642,pos,ns,1.184180466,-0.000200431,0.000121431,-1.650571021,0.099838918,neg,ns,0.73333487,Prkn,Prkn_Intron,17,10888172,10888221,10888172,10888173,50,-,CGCCAGCATAGATAAAGAGCTGCGTAAGGTTGTATTTTAGTGGCAAGGCT,"Intron (Prkn-201/Prkn, intron 1 of 6)",17,10840384,11557234,716851,1,Prkn-201,47788,Prkn-201;Prkn-205;Prkn-209;Prkn-216;Prkn-202;Prkn-211;Prkn-212;Prkn-213;Prkn-214;Prkn-215,Prkn;Prkn;Prkn;Prkn;Prkn;Prkn;Prkn;Prkn;Prkn;Prkn,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,4,50873,ENSMUSG00000023826,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5882,cg00716194,-0.00000602,0.00000209,-2.872934494,0.004347425,loss,ns,-0.00000698,0.00000356,-1.9623553,0.050615367,neg,ns,-0.000241376,0.001042221,-0.231597931,0.817003112,neg,ns,0.087776289,-0.0000487,0.0000358,-1.358850876,0.175181689,neg,ns,0.935451222,Bag6,Bag6_Exon,17,35146237,35146286,35146285,35146286,50,-,CCTCCCCAGGAATGGGTCCCTATTATCCAGCAGGACATTCAGAGCCAGCG,"Exon (Bag6-202/Bag6, exon 22 of 24)",17,35135178,35147305,12128,1,Bag6-202,11059,Bag6-202;Bag6-201;Bag6-203;Bag6-210;Bag6-213;Bag6-211;Bag6-208;Bag6-216;Bag6-215;Bag6-207;Bag6-204;Prrc2a-201;Prrc2a-206;Prrc2a-204;Prrc2a-202,Bag6;Bag6;Bag6;Bag6;Bag6;Bag6;Bag6;Bag6;Bag6;Bag6;Bag6;Prrc2a;Prrc2a;Prrc2a;Prrc2a,0;0;0;0;0;0;6006;5078;0;0;0;0;0;4080;4666,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,224727,ENSMUSG00000024392,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7860,cg11568414,0.000027,0.00000267,10.11003933,5.91E-21,gain,yes,-0.0000089,0.00000454,-1.96218883,0.050634833,neg,ns,-0.000409246,0.001329336,-0.307857235,0.758397708,neg,ns,0.120102988,0.000110041,0.0000457,2.4070762,0.016665162,pos,ns,0.939451811,Gtdc1,Gtdc1_threeUTR,2,44565224,44565273,44565224,44565225,50,+,CGTCTCTAGGAATCTGTATTTAATTTGAGTTGGGGTGGTGGCAGGGATTG,3' UTR,2,44564412,44861622,297211,2,Gtdc1-203,296349,Gtdc1-203;Gtdc1-201;Gtdc1-207,Gtdc1;Gtdc1;Gtdc1,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,43,227835,ENSMUSG00000036890,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19018,cg22666439,-0.00000666,0.00000655,-1.016152391,0.310349232,loss,ns,0.0000218,0.0000111,1.962153935,0.050638914,pos,ns,0.011917345,0.003260034,3.655589609,0.000301297,pos,ns,3.52100503,-0.000375663,0.000112112,-3.350773703,0.000905523,neg,ns,0.877752332,Dach1,Dach1_Promoter,14,98176001,98176050,98176001,98176002,50,+,CGTTGTAAACGGCTATGCTATAATATCCATTAAGCAGAAAGAAAAATAAG,Promoter (6-7kb),14,97825866,98169765,343900,2,Dach1-203,-6236,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,8,76,13134,ENSMUSG00000055639,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8461,cg10221974,-0.0000103,0.00000442,-2.342225735,0.019801696,loss,ns,0.0000147,0.0000075,1.961884192,0.050670471,pos,ns,0.001917101,0.002198605,0.871962287,0.383903775,pos,ns,0.415777618,-0.0000217,0.0000756,-0.287638737,0.773815481,neg,ns,0.542160744,Zeb2,Zeb2_Intergenic_upstream,2,45197648,45197697,45197696,45197697,50,+,CATTTGAAACTTCTGGCTTTGTACTTCTCAAATGCCTCTTTTAGAAATCG,Distal Intergenic,2,45116441,45117395,955,2,Zeb2-230,-80253,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,9,158,24136,ENSMUSG00000026872,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2341,cg12286733,0.0000944,0.0000139,6.781691524,6.02E-11,gain,yes,-0.0000464,0.0000236,-1.961653996,0.050697414,neg,ns,-0.01559835,0.006925554,-2.252289339,0.025003396,neg,ns,1.602000994,0.00059828,0.000238169,2.51199546,0.012512891,pos,ns,0.686956517,Dmpk,Dmpk_threeUTR,7,19092558,19092607,19092606,19092607,50,-,GCCGTGGCTGTGGGCCAGTGCCCGCTGGTGGGGCCAGGCCCCATGCACCG,3' UTR,7,19083849,19093821,9973,1,Dmpk-201,8709,Dmpk-201;Dmpk-218;Dmpk-202;Dmpk-203;Dmpk-219;Dmpk-216;Dmpk-208;Dmpk-209;Dmpk-211;Dmpk-213;Dmpk-217;Dmpk-206;Dmpk-215;Dmpk-207;Dmpk-212;Dmpk-214;Dmpk-205;Dmpk-210;Six5-201,Dmpk;Dmpk;Dmpk;Dmpk;Dmpk;Dmpk;Dmpk;Dmpk;Dmpk;Dmpk;Dmpk;Dmpk;Dmpk;Dmpk;Dmpk;Dmpk;Dmpk;Dmpk;Six5,0;0;0;0;0;7848;0;0;0;5289;5065;4947;4812;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,TRUE,FALSE,threeUTR,1,2,13400,ENSMUSG00000030409,mapped to different genes,7,19092410,19092657,248,*,248,16,0.669354839,0.615384615,0.064516129,1.46E-09,CpGisland,TRUE,U3,Pr-B
18539,cg26301436,0.0000561,0.0000179,3.124638844,0.001948613,gain,ns,0.0000598,0.0000305,1.961516594,0.050713503,pos,ns,0.012359219,0.008933725,1.383433939,0.167527277,pos,ns,0.77591447,0.000238269,0.00030723,0.77553957,0.438612107,pos,ns,0.215698344,Hoxb8,Hoxb8_fiveUTR,11,96282004,96282053,96282052,96282053,50,+,GACCTTTTAAAACTCGGCGCAATTAAACCGTGTTCTTTTACATTTTTCCG,Promoter (<=1kb),11,96281905,96285315,3411,1,Hoxb8-201,99,Hoxb7-201;Hoxb8-201;Hoxb8-202;Hoxb8-203,Hoxb7;Hoxb8;Hoxb8;Hoxb8,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,11,26,15416,ENSMUSG00000056648,mapped to different genes,11,96282018,96282200,183,*,183,12,0.486338798,1.109090909,0.065573771,0.000000226,CpGisland,TRUE,U13,Hc-P
8821,cg12759398,-0.00000194,0.0000016,-1.211984567,0.226441229,loss,ns,-0.00000533,0.00000272,-1.961411892,0.050725765,neg,ns,0.001076329,0.000796485,1.351348348,0.177569202,pos,ns,0.750632356,0.00000107,0.0000274,0.039205073,0.968752125,pos,ns,0.969352329,Clint1,Clint1_Exon,11,45887478,45887527,45887478,45887479,50,+,CGAAAGAAAGCAAAGAAGAACAAAGACAAGTATGTTGGGGTTTCCTCAGA,"Exon (Clint1-201/Clint1, exon 5 of 12)",11,45851964,45910625,58662,1,Clint1-201,35514,Clint1-201;Clint1-202;Clint1-203,Clint1;Clint1;Clint1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,7,216705,ENSMUSG00000006169,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26130,cg07525892,-0.0000539,0.0000142,-3.781459139,0.00018704,loss,ns,0.0000475,0.0000242,1.961344087,0.050733707,pos,ns,-0.019990824,0.007091012,-2.819178071,0.005124498,neg,ns,2.290348677,0.000774972,0.000243859,3.177946296,0.001632841,pos,ns,0.824331872,Sox5,Sox5_Intron,6,144166221,144166270,144166269,144166270,50,+,TTCTCAAGGGAGGCATTGTTCTTGCCTTTCCATAACCAGGCGTGACAGCG,"Intron (Sox5-201/Sox5, intron 1 of 14)",6,143828425,144209480,381056,2,Sox5-201,43210,Sox5-201;Sox5-214;Sox5-205;Sox5-202;Sox5-209;Sox5-207;Sox5-210;Sox5-212;Sox5-208;Sox5-213,Sox5;Sox5;Sox5;Sox5;Sox5;Sox5;Sox5;Sox5;Sox5;Sox5,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,71,20678,ENSMUSG00000041540,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19588,cg21057923,-0.00000707,0.00000724,-0.976910608,0.329375131,loss,ns,-0.0000241,0.0000123,-1.961204198,0.050750096,neg,ns,-0.007313011,0.003603578,-2.029374796,0.04327417,neg,ns,1.363771248,0.000185501,0.000123927,1.496859599,0.135447223,pos,ns,0.102784424,Hnrnpd,Hnrnpd_fiveUTR,5,99976570,99976619,99976570,99976571,50,+,CGTGGGGAGGAGTTTGAATGGCTAGGGAATTAACAACCGGTACAGCAACC,5' UTR,5,99955935,99978938,23004,2,Hnrnpd-211,2319,Hnrnpd-211;Hnrnpd-201;Hnrnpd-203;Hnrnpd-202;Hnrnpd-208;Hnrnpd-205;Hnrnpd-210;Hnrnpd-207,Hnrnpd;Hnrnpd;Hnrnpd;Hnrnpd;Hnrnpd;Hnrnpd;Hnrnpd;Hnrnpd,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,8,11991,ENSMUSG00000000568,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
18751,cg04787627,0.00000786,0.00000323,2.436795613,0.015380468,gain,ns,-0.0000107,0.00000548,-1.960998624,0.050774189,neg,ns,-0.001859944,0.001605275,-1.158645131,0.247492637,neg,ns,0.606437718,-0.0000886,0.0000552,-1.6057248,0.109352534,neg,ns,0.932061834,Tmf1,Tmf1_Exon,6,97168133,97168182,97168181,97168182,50,+,TCAAGTTCATCCATGTCTACCTGAAGACGGCCAAGATCTTTCTCTTGGCG,"Exon (Tmf1-201/Tmf1, exon 7 of 17)",6,97152997,97179122,26126,2,Tmf1-201,10940,Tmf1-201;Tmf1-202;Tmf1-203,Tmf1;Tmf1;Tmf1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,232286,ENSMUSG00000030059,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7419,cg18918349,0.0000274,0.00000304,9.007054498,2.21E-17,gain,yes,-0.0000101,0.00000516,-1.960912461,0.05078429,neg,ns,0.001379827,0.00151301,0.911975085,0.362490475,pos,ns,0.440703401,-0.0000519,0.000052,-0.997373858,0.319360947,neg,ns,0.088671933,Nr2e1,Nr2e1_Promoter,10,42583676,42583725,42583724,42583725,50,+,ACTTAGCTTTTCCCCCAACTCCTGGCGGGGTCTGACGTCAGCCATGTGCG,Promoter (<=1kb),10,42561963,42583632,21670,2,Nr2e1-201,-44,Nr2e1-201;Nr2e1-203;Nr2e1-204;Ostm1-204;Ostm1-202;Ostm1-203,Nr2e1;Nr2e1;Nr2e1;Ostm1;Ostm1;Ostm1,0;0;0;-97;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,11,21907,ENSMUSG00000019803,conserved gene and region,10,42583518,42583725,208,*,208,18,0.644230769,0.834782609,0.086538462,6.77E-13,CpGisland,TRUE,U13,Hc-P
17606,cg13045114,-0.00000523,0.00000278,-1.8780318,0.061315362,loss,ns,0.00000928,0.00000473,1.960876732,0.050788479,pos,ns,0.003099498,0.001385769,2.236662314,0.026019317,pos,ns,1.584704102,-0.0001195,0.0000477,-2.507536661,0.012668615,neg,ns,0.943486467,Elavl2,Elavl2_threeUTR,4,91251181,91251230,91251229,91251230,50,-,AATAGCATTGAGTGGGTCAGCATGAAAACTCGCTTATTCACTTTAGCACG,3' UTR,4,91250763,91372034,121272,2,Elavl2-204,120804,Elavl2-204;Elavl2-201;Elavl2-207;Elavl2-208;Elavl2-202;Elavl2-209;Elavl2-210;Elavl2-206;Elavl2-203;Elavl2-205,Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,31,15569,ENSMUSG00000008489,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7111,cg03750331,-0.0000159,0.00000557,-2.853622832,0.004613295,loss,ns,0.0000186,0.00000947,1.960554394,0.050826285,pos,ns,0.007907544,0.002774181,2.850406968,0.00465898,pos,ns,2.331709192,-0.000293013,0.0000954,-3.071288282,0.002320229,neg,ns,0.85751579,Zfpm2,Zfpm2_Intron,15,41040254,41040303,41040254,41040255,50,+,CGAAATACATGCGAATGAATGTGAAAATGCCATTTAGAGATGCAGGTGTG,"Intron (Zfpm2-201/Zfpm2, intron 5 of 7)",15,40655035,41104592,449558,1,Zfpm2-201,385219,Zfpm2-201;Zfpm2-203,Zfpm2;Zfpm2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,41,22762,ENSMUSG00000022306,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5612,cg04129576,-0.00000145,0.0000017,-0.856262409,0.392514026,loss,ns,0.00000566,0.00000289,1.960549791,0.050826825,pos,ns,0.002666034,0.000845253,3.154124705,0.001767598,pos,ns,2.752616406,-0.0000839,0.0000291,-2.88749842,0.004156236,neg,ns,0.964876702,Pbx3,Pbx3_Intron,2,34356880,34356929,34356880,34356881,50,-,CGATGCTACTGCAGAATAATGCAAGGTTTGTTATGAATTAAATATTAGAA,"Intron (Pbx3-202/Pbx3, intron 2 of 7)",2,34171457,34372038,200582,2,Pbx3-202,15109,Pbx3-202;Pbx3-201;Pbx3-206;Pbx3-207;Pbx3-209;Pbx3-204;Pbx3-205;Pbx3-203,Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,82,18516,ENSMUSG00000038718,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13749,cg13103093,-0.00000352,0.00000211,-1.666840945,0.096555984,loss,ns,0.00000704,0.00000359,1.960528994,0.050829265,pos,ns,0.002038052,0.00105177,1.937734562,0.053563567,pos,ns,1.271130511,-0.0000514,0.0000362,-1.420254477,0.15653854,neg,ns,0.958942212,Map3k20,Map3k20_Intron,2,72378871,72378920,72378919,72378920,50,+,TATTCCTCATGAATGGACCCTTTACATCTAATTGTTGCAGCTTCACGTCG,"Intron (Map3k20-201/Map3k20, intron 8 of 19)",2,72285637,72442610,156974,1,Map3k20-201,93234,Map3k20-201;Map3k20-204;Map3k20-202;Map3k20-206,Map3k20;Map3k20;Map3k20;Map3k20,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,14,18,65964,ENSMUSG00000004085,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17693,cg08844413,0.0000273,0.00000407,6.695249401,1.01E-10,gain,yes,-0.0000136,0.00000692,-1.960450233,0.050838507,neg,ns,0.00491982,0.002026166,2.428142043,0.015745184,pos,ns,1.802852273,-0.0000785,0.0000697,-1.126943395,0.260637972,neg,ns,0.110364195,Zic4,Zic4_threeUTR,9,91386980,91387029,91386980,91386981,50,-,CGAGTTTCTAAAGGCGAGGAAATGGTTTGTAAGAGGGGAAAGAAAAGGAG,3' UTR,9,91368970,91387793,18824,1,Zic4-204,18010,Zic4-204;Zic4-209;Zic4-205;Zic4-201;Zic4-202,Zic4;Zic4;Zic4;Zic4;Zic4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,threeUTR,18,55,22774,ENSMUSG00000036972,conserved gene and region,9,91386798,91386995,198,*,198,14,0.454545455,1.386,0.070707071,6.05E-09,CpGisland,TRUE,U13,Hc-P
10917,cg15136851,-0.00000439,0.00000562,-0.780994499,0.435401722,loss,ns,0.0000187,0.00000955,1.96029832,0.050856336,pos,ns,0.007133857,0.002798004,2.549623466,0.011265103,pos,ns,1.948264815,-0.000220495,0.0000962,-2.291499902,0.022604882,neg,ns,0.912250684,Tcf7l2,Tcf7l2_Intron,19,55887853,55887902,55887901,55887902,50,+,ACTGGAGAATAGATTTACCCTTGGCTTCAAATAGTCGACGTTATCAGGCG,"Intron (Tcf7l2-213/Tcf7l2, intron 4 of 13)",19,55741820,55933229,191410,1,Tcf7l2-213,146033,Tcf7l2-213;Tcf7l2-201;Tcf7l2-208;Tcf7l2-211;Tcf7l2-212;Tcf7l2-206;Tcf7l2-204;Tcf7l2-205;Tcf7l2-222;Tcf7l2-215;Tcf7l2-214;Tcf7l2-207;Tcf7l2-202;Tcf7l2-209;Tcf7l2-210;Tcf7l2-217,Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,55,88,21416,ENSMUSG00000024985,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11363,cg27447914,0.00000194,0.00000999,0.194250286,0.84610714,gain,ns,0.0000333,0.000017,1.960296197,0.050856585,pos,ns,0.006972949,0.004971095,1.40269872,0.161707379,pos,ns,0.791270162,-0.000183275,0.000170956,-1.072063061,0.284525587,neg,ns,0.836978019,Gm13533,Gm13533_Intergenic_upstream,2,57793884,57793933,57793932,57793933,50,+,CTCTAACACTTGGCCAGACCTGTGTCACCCACTGCTAGTGCCTGAAGTCG,Distal Intergenic,2,57643648,57643824,177,2,Gm13533-201,-150060,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,7,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
648,cg01047390,-0.0000324,0.00000935,-3.465114828,0.000604717,loss,ns,0.0000311,0.0000159,1.960055127,0.050884889,pos,ns,-0.001912503,0.004652253,-0.411091904,0.681289181,neg,ns,0.166668508,0.0000505,0.000159991,0.315832568,0.752342126,pos,ns,0.877370172,Rtn3,Rtn3_Exon,19,7467821,7467870,7467821,7467822,50,-,CGAAAATAGAGATACAGGCTGAGAGGAAGAGGAAGAAACAAAGGAATCTG,"Exon (Rtn3-202/Rtn3, exon 2 of 9)",19,7425901,7483202,57302,2,Rtn3-203,15332,Rtn3-203;Rtn3-202;Rtn3-204;Rtn3-201;Rtn3-205,Rtn3;Rtn3;Rtn3;Rtn3;Rtn3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,20168,ENSMUSG00000024758,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6799,cg05223134,-0.00000633,0.00000318,-1.990095015,0.047458549,loss,ns,0.0000106,0.0000054,1.959939855,0.050898427,pos,ns,0.003466423,0.00158341,2.189214266,0.029326676,pos,ns,1.532737166,-0.000125356,0.0000545,-2.30207317,0.021993547,neg,ns,0.938963974,Dgkb,Dgkb_Exon,12,38555813,38555862,38555813,38555814,50,+,CGTATGCTTTTTCAGCACTTTCTAGCAATTATGACAATTTAGGTGGTTAT,"Exon (4930428E07Rik-202/4930428E07Rik-202, exon 5 of 5)",12,37880337,38632119,751783,1,Dgkb-203,675476,Dgkb-203;Dgkb-206;Dgkb-201,Dgkb;Dgkb;Dgkb,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,4,217480,ENSMUSG00000036095,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5386,cg05968748,-0.0000168,0.00000942,-1.782964058,0.075570556,loss,ns,0.0000314,0.000016,1.959763273,0.050919173,pos,ns,-0.004299923,0.00468655,-0.917502863,0.359592448,neg,ns,0.444189438,-0.0000371,0.00016117,-0.23020817,0.81808185,neg,ns,0.644441019,Gm13529,Gm13529_Intron,2,33716991,33717040,33717039,33717040,50,+,ATAATTCAAGTGTCAGGACAGATTAGGTTAAACGAACTGTGTAATTCCCG,"Intron (9430024E24Rik-201/9430024E24Rik-201, intron 1 of 1)",2,33652389,33652798,410,2,Gm13529-201,-64193,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,100041918,NA,mapped to different genes,2,33717023,33717120,98,*,98,10,0.530612245,1.458333333,0.102040816,5.13E-08,CpGisland,TRUE,NA,NRS
20008,cg21560397,-0.0000127,0.00000217,-5.865138751,1.15E-08,loss,yes,0.00000722,0.00000369,1.959623513,0.050935597,pos,ns,0.000335954,0.001079996,0.311070052,0.755956436,pos,ns,0.121503231,-0.0000317,0.0000371,-0.852440488,0.394627748,neg,ns,0.955914025,Spryd3,Spryd3_Exon,15,102133503,102133552,102133503,102133504,50,-,CGCCAATTCAGAAACCGGTAGTGCAGGTTGAGGTCATCCATCTTGTTCAT,"Exon (Spryd3-202/Spryd3, exon 2 of 10)",15,102116528,102136192,19665,2,Spryd3-202,2640,Spryd3-202;Spryd3-203;Spryd3-201;Spryd3-204,Spryd3;Spryd3;Spryd3;Spryd3,0;0;-4619;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,223918,ENSMUSG00000036966,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8897,cg20367883,-0.000000419,0.00000173,-0.242233889,0.808759111,loss,ns,0.00000575,0.00000294,1.959563309,0.050942673,pos,ns,0.000997649,0.00086022,1.159759524,0.247039188,pos,ns,0.607234148,-0.00004,0.0000296,-1.353277137,0.176953095,neg,ns,0.963540084,Gbf1,Gbf1_Exon,19,46280718,46280767,46280718,46280719,50,+,CGGTGTCTTTACAGGTCAGTCAGGACGTAAGTATGGCACCCTTTACTTCC,"Exon (Gbf1-201/Gbf1, exon 33 of 40)",19,46152509,46286510,134002,1,Gbf1-201,128209,Gbf1-201;Gbf1-213;Gbf1-211;Gbf1-203;Gbf1-202;Gbf1-209;Gbf1-205;Gbf1-206,Gbf1;Gbf1;Gbf1;Gbf1;Gbf1;Gbf1;Gbf1;Gbf1,0;0;0;0;0;-2076;-2234;-3796,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,18,107338,ENSMUSG00000025224,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17115,cg02041553,-0.000000634,0.000000661,-0.959454842,0.338077369,loss,ns,0.0000022,0.00000112,1.959041159,0.051004082,pos,ns,0.000444955,0.00032882,1.353185117,0.176982453,pos,ns,0.752069791,-0.0000123,0.0000113,-1.088683752,0.277138998,neg,ns,0.986048661,Gm20537,Gm20537_threeUTR,9,88456340,88456389,88456340,88456341,50,+,CGGCCACCCCTCGCACCACGTACCCCGCGGCCTCTTTGTTGTTGGGCACC,Promoter (<=1kb),9,88407432,88456616,49185,2,Gm20537-202,227,Gm20537-202;Gm20537-201;Syncrip-201;Syncrip-210;Syncrip-211;Syncrip-207;Syncrip-208;Syncrip-203;Syncrip-205;Syncrip-209,Gm20537;Gm20537;Syncrip;Syncrip;Syncrip;Syncrip;Syncrip;Syncrip;Syncrip;Syncrip,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,5,,NA,mapped to different genes,9,88456277,88456476,200,*,200,15,0.625,0.818330606,0.075,6.51E-10,CpGisland,TRUE,U10,Tr-S
4270,cg05308374,0.0000264,0.00000738,3.575105342,0.000405908,gain,ns,-0.0000246,0.0000125,-1.958962845,0.051013298,neg,ns,-0.006174589,0.003673459,-1.680865228,0.093796319,neg,ns,1.027814203,0.00000386,0.00012633,0.030581122,0.975623277,pos,ns,0.830928933,Grm8,Grm8_Exon,6,28125606,28125655,28125654,28125655,50,+,CTTTACCTACCTTAAAAAGTCTTAAAATGTTAGCAACCATGATGGACACG,"Exon (Grm8-202/Grm8, exon 2 of 11)",6,27275119,28134545,859427,2,Grm8-202,8890,Grm8-202;Grm8-203;Grm8-201;Grm8-204;Grm8-206;Grm8-205,Grm8;Grm8;Grm8;Grm8;Grm8;Grm8,0;0;0;0;0;7474,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,14823,ENSMUSG00000024211,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9173,cg16675758,-0.000122822,0.0000219,-5.606491263,4.57E-08,loss,yes,0.0000729,0.0000372,1.958732024,0.051040469,pos,ns,0.051819153,0.0109034,4.752568111,0.00000308,pos,ns,5.511667074,-0.002536162,0.000374967,-6.763693699,6.70E-11,neg,yes,0.44068693,Cadm1,Cadm1_Intron,9,47367570,47367619,47367570,47367571,50,+,CGTCCCTGTCAACACAATGTTCTGCCTGGCCGGGCCTTCATATATAAAGA,"Intron (Gm31816-201/Gm31816-201, intron 1 of 5)",9,47530173,47853385,323213,1,Cadm1-204,-162554,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,77,54725,ENSMUSG00000032076,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16770,cg18301725,0.000000748,0.00000277,0.269861396,0.787446439,gain,ns,0.00000922,0.00000471,1.958350699,0.051085382,pos,ns,0.002703334,0.00137976,1.959278475,0.050976164,pos,ns,1.292632845,-0.000101153,0.0000474,-2.131788217,0.033810319,neg,ns,0.928511135,Lrba,Lrba_Intron,3,86501719,86501768,86501719,86501720,50,-,CGATTGGATCTTGATTGATGGCAATCATTTGTCTTTGTCAAAAAAAGGAG,"Intron (Lrba-202/Lrba, intron 37 of 50)",3,86224680,86746712,522033,1,Lrba-202,277039,Lrba-202;Lrba-204;Lrba-201;Lrba-208,Lrba;Lrba;Lrba;Lrba,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,45,80877,ENSMUSG00000028080,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25036,cg16130408,0.0000251,0.00000914,2.743390713,0.0064348,gain,ns,-0.0000304,0.0000155,-1.958223564,0.051100363,neg,ns,0.001933873,0.004550798,0.424952416,0.67116617,pos,ns,0.173169942,-0.0000396,0.000156502,-0.252922787,0.800495513,neg,ns,0.35763723,Slc26a9,Slc26a9_fiveUTR,1,131744000,131744049,131744000,131744001,50,+,CGCCTCCCTGGATTATTTGAGCAGAGCCCTTTCACACACCTCAGGAACAC,Promoter (<=1kb),1,131744022,131771504,27483,1,Slc26a9-201,0,Slc26a9-201;Slc26a9-204,Slc26a9;Slc26a9,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,1,320718,ENSMUSG00000042268,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11132,cg20710709,0.00010227,0.00000736,13.90436105,1.72E-34,gain,yes,-0.0000245,0.0000125,-1.958167546,0.051106966,neg,ns,0.006938403,0.003660779,1.895335248,0.058978091,pos,ns,1.229309292,-0.000162699,0.000125894,-1.292352388,0.197197625,neg,ns,0.189221867,Pax9,Pax9_Exon,12,56700019,56700068,56700019,56700020,50,-,CGACAGCTCCCCCTACCACAGCCCCAAGGTGGAGGAGTGGAGCAGCCTGG,"Exon (Pax9-203/Pax9, exon 4 of 5)",12,56691767,56712707,20941,1,Pax9-203,8252,Pax9-203;Pax9-201;Pax9-202,Pax9;Pax9;Pax9,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,7,18511,ENSMUSG00000001497,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
10395,cg04041294,0.0000112,0.00000226,4.970998591,0.0000011,gain,yes,-0.0000075,0.00000383,-1.958022635,0.051124049,neg,ns,-0.000951514,0.001122689,-0.847531951,0.39735255,neg,ns,0.400823996,0.0000161,0.0000386,0.415950541,0.677733995,pos,ns,0.026039609,Ext1,Ext1_Exon,15,53345051,53345100,53345051,53345052,50,-,CGAAGCAGGACTCCATGCGGCACTTCTTGCCTTTGTAGATGCTGGAGTTG,"Exon (Ext1-201/Ext1, exon 1 of 11)",15,53064038,53346159,282122,2,Ext1-201,1059,Ext1-201;Ext1-203,Ext1;Ext1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,16,14042,ENSMUSG00000061731,conserved gene and region,15,53344911,53345348,438,*,438,28,0.552511416,0.841325376,0.063926941,3.40E-16,CpGisland,TRUE,NA,NRS
26294,cg04561751,0.0000953,0.0000204,4.674053804,0.00000441,gain,ns,-0.0000678,0.0000346,-1.958005127,0.051126113,neg,ns,0.024062135,0.010150041,2.370644188,0.01836852,pos,ns,1.735925844,-0.000718223,0.000349059,-2.057598201,0.040464727,neg,ns,0.533297254,Cdk8,Cdk8_threeUTR,5,146292638,146292687,146292686,146292687,50,+,GGGTGTATATTTGCAGAACTACTAACGTCAGAACCAATATTTCACTGTCG,3' UTR,5,146231230,146302874,71645,1,Cdk8-207,61408,Cdk8-207;Cdk8-205;Cdk8-206;Cdk8-201;Cdk8-209;Cdk8-203;Cdk8-204,Cdk8;Cdk8;Cdk8;Cdk8;Cdk8;Cdk8;Cdk8,0;0;0;0;6462;0;-3678,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,6,264064,ENSMUSG00000029635,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14733,cg15016062,-0.00001,0.00000678,-1.475832164,0.141003939,loss,ns,0.0000225,0.0000115,1.957737627,0.051157661,pos,ns,0.006681913,0.003374096,1.980356557,0.04854731,pos,ns,1.313834834,-0.0000309,0.000116035,-0.266537303,0.790002638,neg,ns,0.854606468,2210408I21Rik,2210408I21Rik_Intron,13,77490129,77490178,77490129,77490130,50,-,CGGCAAATGTCACTGCCTGGATTTCCCTTTGACAGTCTGGCAACCCCACA,"Intron (2210408I21Rik-201/2210408I21Rik, intron 19 of 19)",13,77135540,77613784,478245,1,2210408I21Rik-201,354589,2210408I21Rik-201,2210408I21Rik,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,19,20,72371,ENSMUSG00000071252,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25754,cg16932758,-0.0000165,0.00000627,-2.636563938,0.008796834,loss,ns,-0.0000209,0.0000107,-1.957710346,0.051160879,neg,ns,-0.010107426,0.003121065,-3.238454335,0.001332098,neg,ns,2.875463782,0.000101799,0.000107333,0.948437704,0.343645435,pos,ns,0.845350306,Ubr4,Ubr4_Exon,4,139432465,139432514,139432513,139432514,50,+,TTTGCTTCTCCCCCAAGTTCTGAAACTGAGTCCCTAACCAAGCTGGACCG,"Exon (Ubr4-212/Ubr4, exon 50 of 106)",4,139352609,139469763,117155,1,Ubr4-210,79856,Ubr4-210;Ubr4-212;Ubr4-201;Ubr4-203;Ubr4-202,Ubr4;Ubr4;Ubr4;Ubr4;Ubr4,0;0;0;0;-2496,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,10,69116,ENSMUSG00000066036,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7993,cg20074403,0.000112855,0.00000993,11.36771276,2.90E-25,gain,yes,0.000033,0.0000169,1.957473372,0.051188842,pos,ns,0.021191583,0.004941088,4.288849732,0.000024,pos,ns,4.619403583,-0.000155534,0.000169924,-0.915316028,0.360737179,neg,ns,0.338766516,Pax2,Pax2_Intergenic_upstream,19,44674906,44674955,44674906,44674907,50,+,CGTATCATCCGGCATATTTGCTGCTTGGCTAGCCAAATAGAAGTTGTTTT,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-81090,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,19,44674652,44674916,265,*,265,31,0.59245283,1.339693412,0.116981132,3.55E-26,CpGisland,TRUE,U13,Hc-P
11737,cg06910030,0.000000435,0.00000321,0.135532884,0.89227853,gain,ns,0.0000107,0.00000545,1.957415886,0.051195627,pos,ns,0.002310009,0.001596802,1.446647435,0.149006048,pos,ns,0.826796105,-0.0000622,0.0000549,-1.133053329,0.258067405,neg,ns,0.925587544,Fam204a,Fam204a_Intergenic_upstream,19,60308721,60308770,60308721,60308722,50,-,CGTCAGGATGCTTTTTGATTGAACCTAGACCAATTTACAATTTTTAAATG,Distal Intergenic,19,60199435,60226701,27267,2,Fam204a-205,-82069,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,14,76539,ENSMUSG00000057858,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8085,cg27526225,0.0000282,0.00000419,6.718239774,8.81E-11,gain,yes,-0.0000139,0.00000713,-1.957354416,0.051202883,neg,ns,-0.007634659,0.00208755,-3.657234538,0.000299451,neg,ns,3.523674549,0.0002869,0.0000718,3.996335566,0.0000804,pos,ns,0.106337943,Pax2,Pax2_Intergenic_upstream,19,44726539,44726588,44726587,44726588,50,+,GTAACTTGTAAAAAATGCAATATTACAATATTCACAAGGACGGCAGAGCG,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-29457,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8962,cg23787205,0.0000143,0.00000357,4.018131095,0.0000737,gain,ns,-0.0000119,0.00000606,-1.957306726,0.051208513,neg,ns,-0.002711069,0.001774644,-1.527669557,0.127614258,neg,ns,0.8941008,0.0000215,0.000061,0.352920039,0.724388234,pos,ns,0.881422245,Kcnc1,Kcnc1_Exon,7,46435201,46435250,46435201,46435202,50,-,CGAAGACTGCCCCCACATAGACCAGGCCCTCACTCCCGATGAGGGCCTGC,"Exon (Kcnc1-203/Kcnc1, exon 3 of 4)",7,46397648,46438704,41057,1,Kcnc1-203,37553,Kcnc1-201;Kcnc1-203,Kcnc1;Kcnc1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,14,16502,ENSMUSG00000058975,conserved gene but different region,7,46435182,46435318,137,*,137,14,0.656934307,0.970647773,0.102189781,3.95E-11,CpGisland,TRUE,U15,NS
9887,cg14027184,-0.00000193,0.00000333,-0.581527983,0.561307268,loss,ns,0.0000111,0.00000565,1.957025985,0.051241668,pos,ns,0.004624876,0.001656046,2.792721627,0.005551502,pos,ns,2.255589507,-0.00011609,0.000057,-2.038403512,0.042357932,neg,ns,0.931912525,Gm46574,Gm46574_Intergenic_downstream,17,51370979,51371028,51371027,51371028,50,-,CTTTGTTAGATTTGCAGCAATCCTATTTTGCCTCTACTGTTTTTAAGTCG,Distal Intergenic,17,51484292,51484721,430,2,Gm46574-201,113742,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,19,108168316,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8225,cg19683102,0.0000358,0.00000602,5.950560297,7.22E-09,gain,yes,-0.00002,0.0000102,-1.956993921,0.051245456,neg,ns,0.006745347,0.002995472,2.251847971,0.025031609,pos,ns,1.601511227,-0.0000207,0.000103014,-0.200790849,0.840993791,neg,ns,0.171624274,Gm5246,Gm5246_Intergenic_downstream,19,44882711,44882760,44882711,44882712,50,+,CGCTGCCGCCCGCCCGGGCTGCCTGTTCCAATATTAGATATAAACAAGTA,Distal Intergenic,19,44851009,44851979,971,1,Gm5246-201,31702,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,20,383450,NA,mapped to different genes,19,44882499,44882726,228,*,228,27,0.671052632,1.080758427,0.118421053,5.25E-23,CpGisland,TRUE,U3,Pr-B
4266,cg20273936,-0.00000793,0.00000204,-3.894424216,0.00012059,loss,ns,-0.00000677,0.00000346,-1.956960921,0.051249354,neg,ns,0.000272934,0.001012866,0.269467411,0.78774929,pos,ns,0.10361198,-0.0000201,0.0000348,-0.576621986,0.564613291,neg,ns,0.948293985,Psmc4,Psmc4_Exon,7,28041866,28041915,28041866,28041867,50,+,CGAAGTCCTTGGCCAGGACAATGTAGCGGTTTTCACGGACAGCCAACATT,"Exon (Psmc4-201/Psmc4, exon 11 of 11)",7,28041707,28050101,8395,2,Psmc4-201,8186,Psmc4-201;Psmc4-205;Psmc4-204;Psmc4-206;Psmc4-203,Psmc4;Psmc4;Psmc4;Psmc4;Psmc4,0;0;0;0;5434,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,23996,ENSMUSG00000030603,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20263,cg16400495,0.0000321,0.00000582,5.528414856,6.87E-08,gain,yes,0.0000193,0.00000988,1.956849658,0.051262501,pos,ns,0.007684574,0.002894252,2.655115495,0.008337705,pos,ns,2.0789535,-0.000219648,0.0000995,-2.206783886,0.028061869,neg,ns,0.115813592,Hoxc5,Hoxc5_Exon,15,102973396,102973445,102973444,102973445,50,+,TGAACTCGGCAACAAGAAACTGCCTGAGTTACATCAGTCGGTTTTCGTCG,"Exon (Mir196a-2-201/Mir196a-2-201, exon 1 of 1)",15,102967443,103015676,48234,1,Hoxc5-202,5953,Hoxc10-201;Hoxc5-202;Hoxc9-202;Hoxc9-201,Hoxc10;Hoxc5;Hoxc9;Hoxc9,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,72,134,15424,ENSMUSG00000022485,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
19241,cg15084504,-0.0000108,0.00000592,-1.819578443,0.069787666,loss,ns,-0.0000197,0.0000101,-1.956783022,0.051270376,neg,ns,-0.005609833,0.002948584,-1.902551646,0.058025534,neg,ns,1.236380852,0.0000512,0.000101402,0.504704933,0.614124665,pos,ns,0.890792453,Gm18148,Gm18148_Intergenic_upstream,14,98833635,98833684,98833635,98833636,50,+,CGATCTTTAGGTTAATAGGAACAGAAATGGCATTTAAAGACTATTTGGAT,Distal Intergenic,14,98922654,98923527,874,1,Gm18148-201,-88970,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,9,100416529,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19052,cg01280724,0.0000823,0.0000212,3.882479792,0.000126381,gain,ns,-0.0000705,0.000036,-1.956724651,0.051277275,neg,ns,0.050324538,0.010555485,4.767619434,0.00000287,pos,ns,5.541842456,-0.002118784,0.000363002,-5.836834476,1.34E-08,neg,yes,0.357151609,Cdk12,Cdk12_Intergenic_downstream,11,98290053,98290102,98290053,98290054,50,+,CGTTGTTTTATTGCTGGCAAATGCTGCTGCTTGCTGCTGTTGGAGGCGTT,Distal Intergenic,11,98263502,98268011,4510,1,Cdk12-204,26551,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,25,69131,ENSMUSG00000003119,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4113,cg24882108,0.000000548,0.00000408,0.134312767,0.893242416,gain,ns,0.0000136,0.00000693,1.956466913,0.051307746,pos,ns,0.003676783,0.002030537,1.810744575,0.071148372,pos,ns,1.147835032,-0.000177093,0.0000698,-2.536053329,0.011701692,neg,ns,0.90484442,Gm12072,Gm12072_Intergenic_upstream,11,26815320,26815369,26815320,26815321,50,-,CGTTATTGCTGTAGCTCTGCACCTGATCCCCGAGCCATTAGAGCACTCTG,Distal Intergenic,11,26832804,26845457,12654,1,Gm12072-201,-17484,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,7,666270,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11273,cg20909027,-0.0000123,0.0000147,-0.838014783,0.402668049,loss,ns,-0.0000487,0.0000249,-1.956420864,0.051313192,neg,ns,0.013707909,0.007296071,1.878806805,0.061209054,pos,ns,1.213184336,-0.000890004,0.000250911,-3.547084389,0.000449724,neg,ns,0.777786744,Gria1,Gria1_Exon,11,57309758,57309807,57309758,57309759,50,+,CGTTTTTAAAGAAATCCAGTAAACCTGGCAGTGTTAAAACTGAACGAGCA,"Exon (Gria1-202/Gria1, exon 14 of 16)",11,57011810,57330244,318435,1,Gria1-201,297948,Gria1-201;Gria1-202;Gria1-204,Gria1;Gria1;Gria1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,13,14799,ENSMUSG00000020524,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3592,cg07568915,0.0000421,0.00000493,8.548065385,5.79E-16,gain,yes,-0.0000164,0.00000837,-1.95635749,0.051320688,neg,ns,-0.00251884,0.00245346,-1.026648138,0.305386585,neg,ns,0.515150045,0.0000574,0.0000844,0.679866512,0.497096357,pos,ns,0.808168549,Rps24,Rps24_Intron,14,24635832,24635881,24635832,24635833,50,+,CGTAAACAAGGGGCTTTAAAAACCATGTTTGCTTTTTAGGCTGATAATAC,"Intron (4930428N03Rik-205/4930428N03Rik-205, intron 2 of 5)",14,24491149,24491989,841,1,Rps24-209,144683,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,12,20088,ENSMUSG00000025290,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9570,cg19714132,0.000126502,0.0000114,11.09309315,2.64E-24,gain,yes,-0.0000379,0.0000194,-1.956239101,0.051334692,neg,ns,0.006630769,0.005675722,1.168268819,0.243596015,pos,ns,0.613329821,-0.0000837,0.000195188,-0.428867561,0.668317476,neg,ns,0.079542508,Foxg1,Foxg1_fiveUTR,12,49383893,49383942,49383941,49383942,50,-,AAGGTTAAACCAAAAATTTTTTTACAGCCCTAGTGTGCGCCTGTAGCTCG,5' UTR,12,49382660,49384364,1705,1,Foxg1-202,1233,Foxg1-202;Foxg1-203;Foxg1-204;Foxg1-201;Gm43517-201,Foxg1;Foxg1;Foxg1;Foxg1;Gm43517,0;1093;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,TRUE,FALSE,fiveUTR,4,27,15228,ENSMUSG00000020950,conserved gene but different region,12,49383930,49384150,221,*,221,29,0.737556561,0.967834491,0.13122172,3.87E-26,CpGisland,TRUE,U3,Pr-B
18676,cg21632355,0.00000115,0.00000345,0.334853459,0.73796209,gain,ns,-0.0000115,0.00000586,-1.955844822,0.051381357,neg,ns,0.000459318,0.001716401,0.267605504,0.789180951,pos,ns,0.102823406,-0.0000617,0.000059,-1.044870006,0.29689712,neg,ns,0.879762731,Pias3,Pias3_threeUTR,3,96705041,96705090,96705089,96705090,50,+,GAGGGGCATGGAGGACCCCTGCCCTCAGGTCCCTCTTTGACTGGCTGTCG,3' UTR,3,96696384,96705962,9579,1,Pias3-202,8657,Nudt17-204;Nudt17-203;Nudt17-202;Nudt17-201;Pias3-202;Pias3-208;Pias3-201;Pias3-203;Pias3-210;Pias3-206;Pias3-204;Pias3-205,Nudt17;Nudt17;Nudt17;Nudt17;Pias3;Pias3;Pias3;Pias3;Pias3;Pias3;Pias3;Pias3,3457;2153;3472;3449;0;0;0;0;7847;4563;3688;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,229615,ENSMUSG00000028101,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15880,cg11096415,0.0000553,0.0000157,3.511410097,0.000511934,gain,ns,0.0000523,0.0000268,1.955839284,0.051382013,pos,ns,0.015928691,0.007838927,2.031998819,0.043006165,pos,ns,1.366469286,-0.0000779,0.00026958,-0.288968279,0.772798795,neg,ns,0.515106934,Gm6411,Gm6411_Intron,13,83741794,83741843,83741794,83741795,50,+,CGACTTTCTCACACCGTCAGACAAAACTAGTGTCTCTTGTTCCGAGCCCT,"Intron (C130071C03Rik-204/C130071C03Rik-204, intron 3 of 3)",13,83761132,83762335,1204,2,Gm6411-201,20492,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,36,623241,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
1855,cg17902574,-0.00000208,0.0000034,-0.611881202,0.541064853,loss,ns,0.0000113,0.00000577,1.955787034,0.0513882,pos,ns,-0.001740974,0.001689761,-1.030307749,0.303668736,neg,ns,0.517599918,-0.0000132,0.0000581,-0.227830996,0.819927823,neg,ns,0.913935445,Psat1,Psat1_Intergenic_downstream,19,15615537,15615586,15615585,15615586,50,-,AACCATTAGTCCCATTTGTAACTACTCAGCGAAAGGCTTGTCAGTCACCG,Distal Intergenic,19,15905130,15909712,4583,2,Psat1-204,294175,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,14,17,107272,ENSMUSG00000024640,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2576,cg00887636,-0.00000694,0.00000269,-2.582088122,0.010279061,loss,ns,0.00000893,0.00000457,1.955690636,0.051399615,pos,ns,0.000990981,0.001337906,0.740695638,0.459438658,pos,ns,0.337772465,-0.0000168,0.000046,-0.364173769,0.71597652,neg,ns,0.045028445,Usp54,Usp54_fiveUTR,14,20640946,20640995,20640946,20640947,50,+,CGGCTGCTATAGCTACAGGGAGCCAAGGCAACCAGCTCTCGCGACACTTT,Promoter (<=1kb),14,20548912,20641063,92152,2,Usp54-201,68,Usp54-201,Usp54,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,9,78787,ENSMUSG00000034235,conserved gene but different region,14,20640577,20641202,626,*,626,64,0.672523962,0.940734479,0.102236422,2.07E-49,CpGisland,TRUE,U1,Pr-A
22913,cg03298890,-0.0000166,0.00000608,-2.728367614,0.006727991,loss,ns,-0.0000202,0.0000103,-1.955570621,0.051413831,neg,ns,0.00449869,0.003027064,1.48615631,0.138254059,pos,ns,0.85932211,-0.000156854,0.0001041,-1.506760482,0.132890382,neg,ns,0.936274058,Tmcc1,Tmcc1_Exon,6,116134152,116134201,116134152,116134153,50,-,CGCTGGTGCTGGAAGAGATGCTTCAAGCCTTGGCCAATCACGTTAATGTT,"Exon (Tmcc1-202/Tmcc1, exon 3 of 6)",6,116018611,116193486,174876,2,Tmcc1-202,59285,Tmcc1-202;Tmcc1-201;Tmcc1-206;Tmcc1-204;Tmcc1-205;Tmcc1-212,Tmcc1;Tmcc1;Tmcc1;Tmcc1;Tmcc1;Tmcc1,0;0;0;-249;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,3,330401,ENSMUSG00000030126,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5659,cg06466407,0.000148932,0.0000231,6.443652334,4.45E-10,gain,yes,-0.0000768,0.0000393,-1.955487493,0.051423679,neg,ns,0.01158789,0.011503549,1.007331722,0.314561006,pos,ns,0.502295116,-0.000573846,0.000395606,-1.450548258,0.147916748,neg,ns,0.390637176,Mapkap1,Mapkap1_Intron,2,34526841,34526890,34526841,34526842,50,+,CGCCTGGGACCCCATTTCAGCAGGACATATTTGAACAGAAACAGTTTGCA,"Intron (Mapkap1-204/Mapkap1, intron 5 of 10)",2,34406862,34623475,216614,1,Mapkap1-204,119979,Mapkap1-204;Mapkap1-202;Mapkap1-201;Mapkap1-209;Mapkap1-203;Mapkap1-207,Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,59,227743,ENSMUSG00000038696,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27798,cg24460327,-0.0000194,0.00000782,-2.485557988,0.013461692,loss,ns,0.000026,0.0000133,1.955363222,0.051438405,pos,ns,-0.003638076,0.003892627,-0.934606804,0.350718397,neg,ns,0.455041452,0.000163556,0.000133867,1.221776918,0.222720252,pos,ns,0.75900515,Gpatch2,Gpatch2_Intergenic_downstream,1,187378155,187378204,187378155,187378156,50,+,CGAGGAAATATTGTTCATTAGCTGTAATCTGCGGAATTGCTTGAGTGAAC,Distal Intergenic,1,187226180,187351427,125248,1,Gpatch2-208,151975,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,10,67769,ENSMUSG00000039210,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
14707,cg26611924,-0.00000486,0.00000457,-1.063814866,0.28824052,loss,ns,0.0000152,0.00000776,1.955307674,0.051444988,pos,ns,0.002296281,0.002274163,1.009725942,0.313414075,pos,ns,0.503881504,-0.0000537,0.0000782,-0.68701642,0.492585995,neg,ns,0.914734372,2210408I21Rik,2210408I21Rik_Intron,13,77397261,77397310,77397261,77397262,50,-,CGGCCTTTTGGGGGAGGAATTTAGCACACTGTCAAAAACATTATCAGAAA,"Intron (2210408I21Rik-201/2210408I21Rik, intron 19 of 19)",13,77135540,77613784,478245,1,2210408I21Rik-201,261721,2210408I21Rik-201,2210408I21Rik,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,19,20,72371,ENSMUSG00000071252,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27312,cg14165904,-0.00000291,0.00000227,-1.286112254,0.199363645,loss,ns,0.00000752,0.00000385,1.955273659,0.05144902,pos,ns,0.003204878,0.001127412,2.842685388,0.004770357,pos,ns,2.321449135,-0.0000611,0.0000388,-1.576520631,0.115925771,neg,ns,0.939734178,Ywhab,Ywhab_Intron,2,164013037,164013086,164013085,164013086,50,+,CTGCCTCTTAACCAGTTTTTCAGGATGCCACATTCTAAAACAACTCTTCG,"Intron (Ywhab-201/Ywhab, intron 2 of 5)",2,163994960,164018588,23629,1,Ywhab-201,18077,Ywhab-201;Ywhab-202,Ywhab;Ywhab,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,3,54401,ENSMUSG00000018326,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5086,cg19525297,-0.00000102,0.00000425,-0.241028471,0.809692386,loss,ns,-0.0000141,0.00000722,-1.955208382,0.051456758,neg,ns,0.014304709,0.00211493,6.763680943,6.71E-11,pos,yes,10.17357685,-0.000501874,0.0000727,-6.900288479,2.93E-11,neg,yes,0.918351191,Brd4,Brd4_Exon,17,32229434,32229483,32229434,32229435,50,+,CGGCATCCACAGGCTGCTGGAAAGGCCATGCAAACTGGTGTTTCCATAGT,"Exon (Brd4-201/Brd4, exon 3 of 20)",17,32196274,32284097,87824,2,Brd4-201,54614,Brd4-201;Brd4-203;Brd4-202;Brd4-212;Brd4-205;Brd4-204;Brd4-210;Brd4-211,Brd4;Brd4;Brd4;Brd4;Brd4;Brd4;Brd4;Brd4,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,5,57261,ENSMUSG00000024002,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7067,cg16697786,0.000021,0.00000259,8.105328414,1.23E-14,gain,yes,-0.00000861,0.00000441,-1.954862735,0.051497747,neg,ns,0.000750471,0.00129088,0.581364127,0.561417534,pos,ns,0.250714028,-0.0000191,0.0000444,-0.431004701,0.666764493,neg,ns,0.027898972,Tfap2a,Tfap2a_fiveUTR,13,40733677,40733726,40733725,40733726,50,-,TCCTCGTACTTGATATTATCCGTCAATTTCCAAAGCATTTTCATGGATCG,Promoter (<=1kb),13,40715675,40733823,18149,2,Tfap2a-202,97,Tfap2a-201;Tfap2a-202;Tfap2a-205;Tfap2a-203;Tfap2a-209;Tfap2a-208;Tfap2a-206;Tfap2a-204;Tfap2a-207,Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a,0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,6,57,21418,ENSMUSG00000021359,mapped to different genes,13,40733455,40733807,353,*,353,30,0.580736544,1.016705069,0.084985836,6.14E-21,CpGisland,TRUE,U3,Pr-B
25531,cg26058975,0.0000341,0.00000972,3.510476067,0.000513667,gain,ns,0.0000323,0.0000165,1.954716836,0.051515056,pos,ns,-0.001890402,0.004835733,-0.390923507,0.696122305,neg,ns,0.15731445,0.000327168,0.0001663,1.967331533,0.050036391,pos,ns,0.872706303,Ebf3,Ebf3_Exon,7,137198668,137198717,137198716,137198717,50,+,ATGGTGGGGCTGGACGGCACTACTGCAACAAAGCAAACACGGTCAGCACG,"Exon (Ebf3-204/Ebf3, exon 15 of 16)",7,137193673,137314445,120773,2,Ebf3-204,115728,Ebf3-204;Ebf3-201;Ebf3-202;Ebf3-203;Ebf3-208;Ebf3-205,Ebf3;Ebf3;Ebf3;Ebf3;Ebf3;Ebf3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,84,13593,ENSMUSG00000010476,conserved gene but different region,7,137198447,137198916,470,*,470,32,0.617021277,0.72783585,0.068085106,3.00E-19,CpGisland,TRUE,U15,NS
12191,cg13090160,-0.00000184,0.00000189,-0.97279677,0.331412756,loss,ns,-0.00000628,0.00000321,-1.954686984,0.051518599,neg,ns,-0.00047337,0.000940766,-0.503174668,0.615198792,neg,ns,0.210984526,-0.0000226,0.0000324,-0.699255207,0.484916873,neg,ns,0.950014392,Aopep,Aopep_threeUTR,13,63300753,63300802,63300753,63300754,50,-,CGCTTTGTTCACAGTGGCTAAGTTCTGCACCTGAAGAGAAGGTGAGATGG,3' UTR,13,63015167,63302284,287118,1,Aopep-201,285586,Aopep-202;Aopep-201;Aopep-208;Aopep-219;Aopep-224;Aopep-227;Aopep-203;Aopep-216;Aopep-209;Aopep-210;Aopep-228;Aopep-213;Aopep-225;Aopep-226;Aopep-221;Aopep-214;Aopep-205;Aopep-222;Aopep-211;Fancc-218;Fancc-201,Aopep;Aopep;Aopep;Aopep;Aopep;Aopep;Aopep;Aopep;Aopep;Aopep;Aopep;Aopep;Aopep;Aopep;Aopep;Aopep;Aopep;Aopep;Aopep;Fancc;Fancc,0;0;0;0;0;0;0;0;0;0;0;0;0;0;21794;18846;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,5,7,72061,ENSMUSG00000021458,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3450,cg03981213,0.0000838,0.0000161,5.216766048,0.000000334,gain,yes,-0.0000534,0.0000273,-1.954544449,0.051535515,neg,ns,0.02812338,0.007997804,3.516387682,0.000502795,pos,ns,3.298609357,-0.000727671,0.000275044,-2.645655606,0.008569063,neg,ns,0.618571525,Bcl11a,Bcl11a_Intron,11,24091579,24091628,24091627,24091628,50,+,GCTGTTCTTAGCAGGGTTAGTAACTTGGGGTCTATTTCTGAGCTCATTCG,"Intron (Bcl11a-201/Bcl11a, intron 2 of 4)",11,24078056,24173194,95139,1,Bcl11a-201,13523,Bcl11a-201;Bcl11a-203;Bcl11a-205;Bcl11a-202;Bcl11a-204,Bcl11a;Bcl11a;Bcl11a;Bcl11a;Bcl11a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,98,14025,ENSMUSG00000000861,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3413,cg23538701,0.0000267,0.0000113,2.371978061,0.018303552,gain,ns,0.0000374,0.0000192,1.954433924,0.051548636,pos,ns,0.019881801,0.005610937,3.543401138,0.000455802,pos,ns,3.341223544,-0.000406212,0.00019296,-2.105163018,0.036081486,neg,ns,0.710723154,A830031A19Rik,A830031A19Rik_Intron,11,24062707,24062756,24062707,24062708,50,+,CGGGAGCTCTTACAGAGCTTATAAATCCCTGTTGGGAGGGAGAAAAAAAA,"Intron (A830031A19Rik-201/A830031A19Rik, intron 1 of 2)",11,24048955,24075054,26100,2,A830031A19Rik-201,12298,A830031A19Rik-201,A830031A19Rik,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,23,268391,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
27694,cg13913063,-0.00000162,0.00000141,-1.148148151,0.251792622,loss,ns,0.00000468,0.00000239,1.95441864,0.05155045,pos,ns,0.001693947,0.000700816,2.417105912,0.016221393,pos,ns,1.789911847,-0.0000585,0.0000241,-2.425926526,0.01583978,neg,ns,0.968240851,Zbtb18,Zbtb18_Exon,1,177429498,177429547,177429546,177429547,50,+,GCATATAATTAAAACTACAGGGCACCCTTAATGATCTCTGACAATGATCG,"Exon (Gm26801-201/Gm26801-201, exon 2 of 2)",1,177442351,177447237,4887,1,Zbtb18-209,-12804,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,22,30928,ENSMUSG00000063659,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2595,cg09436767,0.000120584,0.0000129,9.316510884,2.31E-18,gain,yes,-0.000043,0.000022,-1.954298761,0.051564685,neg,ns,0.018167801,0.006441877,2.820265084,0.005107609,pos,ns,2.291782329,-0.000602396,0.000221536,-2.719184215,0.006913104,neg,ns,0.476240304,Eif4g1,Eif4g1_fiveUTR,16,20675389,20675438,20675389,20675390,50,+,CGAGTGCAGAGTGCAGCCCCTGCCCGCCCTGGCCCAGCTGCCCATGTCTA,5' UTR,16,20668313,20679395,11083,1,Eif4g1-220,7076,Eif4g1-220;Eif4g1-208;Eif4g1-201;Eif4g1-206;Eif4g1-216;Eif4g1-202;Eif4g1-217;Eif4g1-207;Eif4g1-218;Eif4g1-225;Eif4g1-214;Eif4g1-203;Eif4g1-222;Eif4g1-221;Eif4g1-205;Eif4g1-212;Eif4g1-204;Eif4g1-215;Eif4g1-219;Eif4g1-210;Eif4g1-211,Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;-2968,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,7,10,208643,ENSMUSG00000045983,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18106,cg26048456,-0.0000216,0.00000745,-2.898442857,0.004017641,loss,ns,0.0000247,0.0000127,1.954122879,0.051585575,pos,ns,-0.003762317,0.003708932,-1.014393738,0.31118597,neg,ns,0.506979992,0.000205139,0.00012755,1.608305287,0.108786255,pos,ns,0.679440549,Pcdh9,Pcdh9_Exon,14,93887234,93887283,93887282,93887283,50,+,TTCCCACTGTCTTCATCTGTGGCACTAATAGTTGTTAAGTATAACCCACG,"Exon (Pcdh9-208/Pcdh9, exon 2 of 5)",14,93013410,93890669,877260,2,Pcdh9-208,3386,Pcdh9-208;Pcdh9-204;Pcdh9-202;Pcdh9-207;Pcdh9-201;Pcdh9-206;Pcdh9-203;Pcdh9-205,Pcdh9;Pcdh9;Pcdh9;Pcdh9;Pcdh9;Pcdh9;Pcdh9;Pcdh9,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,10,211712,ENSMUSG00000055421,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
452,cg14890310,0.0000148,0.00000428,3.465267467,0.000604387,gain,ns,0.0000142,0.00000727,1.953871003,0.051615504,pos,ns,0.007465422,0.00212883,3.506819335,0.000520501,pos,ns,3.283578075,-0.000210048,0.0000732,-2.869100983,0.004399065,neg,ns,0.101681593,Dync1i1,Dync1i1_Exon,6,6006287,6006336,6006335,6006336,50,+,CTCCTTTGAAGACAATGCAGACTATGTGTACGATGTCATGTGGTCCCCCG,"Exon (Dync1i1-203/Dync1i1, exon 15 of 17)",6,5725639,6028039,302401,1,Dync1i1-203,280648,Dync1i1-203;Dync1i1-202;Dync1i1-204;Dync1i1-201;Dync1i1-206,Dync1i1;Dync1i1;Dync1i1;Dync1i1;Dync1i1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,9,13426,ENSMUSG00000029757,conserved gene and region,6,6006221,6006480,260,*,260,19,0.615384615,0.771995624,0.073076923,3.18E-12,CpGisland,TRUE,U2,Pr-W
1204,cg26287744,0.000000734,0.00000916,0.080121855,0.936192039,gain,ns,0.0000304,0.0000156,1.953553543,0.051653247,pos,ns,0.005641114,0.004560612,1.236920486,0.217052808,pos,ns,0.663434592,0.000177844,0.000156839,1.133925532,0.257701899,pos,ns,0.908962343,Bcor,Bcor_Exon,X,12061546,12061595,12061546,12061547,50,-,CGGACCCTCTCGCTGTTCATCCAGCTGTGAACGTTCCCATACAGGGGGGT,"Exon (Bcor-202/Bcor, exon 2 of 15)",20,12036740,12080553,43814,2,Bcor-202,18958,Bcor-202;Bcor-203;Bcor-204;Bcor-206;Bcor-201;Bcor-207;Bcor-205,Bcor;Bcor;Bcor;Bcor;Bcor;Bcor;Bcor,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,14,74,71458,ENSMUSG00000040363,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2798,cg03433076,2.69E-08,0.00000246,0.01091592,0.99129755,gain,ns,0.00000816,0.00000418,1.953545171,0.051654242,pos,ns,0.002948096,0.001224238,2.408106617,0.016619082,pos,ns,1.779392971,-0.0000893,0.0000421,-2.121002162,0.034715142,neg,ns,0.937089183,Wdpcp,Wdpcp_Intron,11,21827930,21827979,21827930,21827931,50,-,CGCTTTTCATCTAAACCCATCAATGTGTGCACTGGTCCATTAATTATGTG,"Intron (Wdpcp-201/Wdpcp, intron 14 of 17)",11,21572235,21898989,326755,1,Wdpcp-201,255695,Wdpcp-201,Wdpcp,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,7,216560,ENSMUSG00000020319,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25084,cg09694433,0.00000217,0.00000319,0.678594141,0.497901315,gain,ns,-0.0000106,0.00000543,-1.953473923,0.051662716,neg,ns,-0.002285731,0.001590052,-1.437519811,0.151578959,neg,ns,0.819361081,0.0000917,0.0000547,1.676749158,0.094599599,pos,ns,0.909993916,Nfasc,Nfasc_Exon,1,132620938,132620987,132620938,132620939,50,-,CGAGATCGTGTGCCGGATGCTGCCCATCTTGTTGGAGGCCAGGCAGAAAT,"Exon (Nfasc-202/Nfasc, exon 10 of 30)",1,132564690,132741757,177068,2,Nfasc-202,120770,Nfasc-202;Nfasc-201;Nfasc-207;Nfasc-203;Nfasc-205;Nfasc-208;Nfasc-210,Nfasc;Nfasc;Nfasc;Nfasc;Nfasc;Nfasc;Nfasc,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,10,269116,ENSMUSG00000026442,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7927,cg15848840,0.00000245,0.000009,0.272550205,0.785380448,gain,ns,0.0000299,0.0000153,1.953418387,0.051669322,pos,ns,0.001764438,0.00448087,0.393771324,0.694020583,pos,ns,0.158627649,0.000154275,0.000154097,1.001156328,0.317532058,pos,ns,0.845966043,Hif1an,Hif1an_Intron,19,44633852,44633901,44633900,44633901,50,+,TAATTCCAATTTTATGCCTTTGTTATGGCTTTAATCACTTTCTTTATGCG,"Intron (Gm35460-201/Gm35460-201, intron 3 of 6)",19,44562850,44576274,13425,1,Hif1an-201,71002,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,31,319594,ENSMUSG00000036450,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17608,cg07211487,0.00000292,0.00000761,0.383592529,0.701543418,gain,ns,-0.0000252,0.0000129,-1.953285076,0.051685183,neg,ns,-0.007510081,0.003786177,-1.983552774,0.048187671,neg,ns,1.317064059,-0.0000715,0.000130206,-0.549085852,0.583341814,neg,ns,0.853432126,Elavl2,Elavl2_threeUTR,4,91251942,91251991,91251990,91251991,50,-,ACACAAGGTCTTATTTACATTACACAAAGCTCAGGTGTTAGCCTTGAACG,3' UTR,4,91250763,91372034,121272,2,Elavl2-204,120043,Elavl2-204;Elavl2-201;Elavl2-207;Elavl2-208;Elavl2-202;Elavl2-209;Elavl2-210;Elavl2-206;Elavl2-203;Elavl2-205,Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,31,15569,ENSMUSG00000008489,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2543,cg10596590,-0.00000311,0.00000198,-1.568356372,0.117818127,loss,ns,0.00000659,0.00000337,1.953181668,0.051697488,pos,ns,0.002085019,0.000987809,2.110751792,0.035594207,pos,ns,1.448620678,-0.0000537,0.000034,-1.581158856,0.114861438,neg,ns,0.954784522,Pkhd1,Pkhd1_Intron,1,20429049,20429098,20429049,20429050,50,+,CGGTATTTTAATTGTAATGTCTCTGCCTGATTAAAAAAAGAAAATATGAA,"Intron (Pkhd1-201/Pkhd1, intron 36 of 66)",1,20057779,20618064,560286,2,Pkhd1-201,188966,Pkhd1-201,Pkhd1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,25,241035,ENSMUSG00000043760,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16123,cg17936504,-0.0000038,0.00000338,-1.124701193,0.261585759,loss,ns,0.0000112,0.00000575,1.952751432,0.051748713,pos,ns,0.004082547,0.001683209,2.425454016,0.015860019,pos,ns,1.799696285,-0.000148212,0.0000579,-2.560434136,0.010927759,neg,ns,0.930720417,Zfp407,Zfp407_Intron,18,84465139,84465188,84465139,84465140,50,+,CGTCCTTAGCATATTCTAATGAAGCCTATCATGCAAATGAGAGTGACCTT,"Intron (Zfp407-201/Zfp407, intron 2 of 2)",18,84128027,84558425,430399,2,Zfp407-201,93237,Zfp407-201;Zfp407-202,Zfp407;Zfp407,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,32,240476,ENSMUSG00000048410,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3822,cg01077341,-0.00000139,0.0000013,-1.069531839,0.285662155,loss,ns,0.0000043,0.0000022,1.952732031,0.051751024,pos,ns,0.001526071,0.000645115,2.365581714,0.018616943,pos,ns,1.730091632,-0.0000588,0.0000222,-2.649212025,0.008481416,neg,ns,0.960958075,5730522E02Rik,5730522E02Rik_Intergenic_downstream,11,25531359,25531408,25531359,25531360,50,+,CGCCAGGATATTATGCACCTCTGACATGGAAAAATTGTGTTAGTTCTACA,Distal Intergenic,11,25602816,25620098,17283,2,5730522E02Rik-205,88690,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,21,90,70626,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2533,cg08764023,-0.0000069,0.00000368,-1.872731572,0.062046529,loss,ns,0.0000122,0.00000626,1.952606495,0.051765979,pos,ns,0.005085139,0.001832555,2.774889902,0.00585724,pos,ns,2.232306964,-0.000189106,0.000063,-3.000669172,0.002912542,neg,ns,0.926125402,Bclaf1,Bclaf1_threeUTR,10,20332540,20332589,20332588,20332589,50,-,TTTCTAGAAACAGTTTGTGTAAGAACTTTGGTTCGTTATGCTTGATTCCG,3' UTR,10,20312469,20342501,30033,1,Bclaf1-202,20071,Bclaf1-202;Bclaf1-204;Bclaf1-201;Bclaf1-208;Bclaf1-203;Bclaf1-210;Bclaf1-207;Bclaf1-209;Bclaf1-206,Bclaf1;Bclaf1;Bclaf1;Bclaf1;Bclaf1;Bclaf1;Bclaf1;Bclaf1;Bclaf1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,TRUE,FALSE,threeUTR,3,7,72567,ENSMUSG00000037608,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23906,cg03954182,-0.00000829,0.0000046,-1.800737851,0.072716059,loss,ns,0.0000153,0.00000782,1.952521675,0.051776086,pos,ns,0.005806867,0.00229064,2.535041413,0.011734844,pos,ns,1.930522679,-0.000228258,0.0000788,-2.897596344,0.004028208,neg,ns,0.575007228,Gm29344,Gm29344_Intergenic_upstream,1,121046787,121046836,121046787,121046788,50,+,CGATTAGAAAATTTCTACATGAAGCTCATTCTGCTAGCCACTCCACAGTA,Distal Intergenic,1,120825247,120825456,210,2,Gm29344-201,-221331,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,7,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27631,cg21323511,0.0000208,0.0000282,0.734685025,0.463086721,gain,ns,0.0000937,0.000048,1.952509755,0.051777506,pos,ns,0.037617673,0.014057333,2.676017858,0.007846296,pos,ns,2.105335296,-0.000777348,0.000483431,-1.607983704,0.108856698,neg,ns,0.380565824,Aim2,Aim2_Intron,1,173390300,173390349,173390348,173390349,50,-,TCTGGTGCTGATGCTGTGTGTGTGGTGAGGTCTCTGTGGCGCAATGGACG,"Intron (Aim2-202/Aim2, intron 1 of 11)",1,173350879,173466040,115162,1,Aim2-202,39421,Aim2-202,Aim2,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,7,383619,ENSMUSG00000037860,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14056,cg00801799,0.0000858,0.0000125,6.851906358,3.93E-11,gain,yes,-0.0000415,0.0000213,-1.952388809,0.051791921,neg,ns,0.026721486,0.006230152,4.289058526,0.000024,pos,ns,4.619788835,-0.000656631,0.000214254,-3.064725675,0.002370193,neg,ns,0.403546933,Cnot9,Cnot9_Exon,1,74528769,74528818,74528769,74528770,50,-,CGAAACGCTGGCTTGCACAACTGGTGAAGAACCTGCAAGAGGGCCAGGTC,"Exon (Cnot9-201/Cnot9, exon 8 of 8)",1,74506058,74530842,24785,1,Cnot9-201,22711,Cnot9-201;Cnot9-202;Cnot9-203;Usp37-205,Cnot9;Cnot9;Cnot9;Usp37,0;22709;5242;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,58184,ENSMUSG00000026174,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14818,cg20280425,0.000208366,0.000017,12.24068702,2.26E-28,gain,yes,-0.0000565,0.0000289,-1.9523198,0.051800147,neg,ns,0.025635238,0.00847223,3.02579583,0.002687501,pos,ns,2.570651321,-0.000798532,0.000291359,-2.74071124,0.006486231,neg,ns,0.329533948,Pipox,Pipox_Intergenic_downstream,11,77872393,77872442,77872441,77872442,50,-,GAATAATCAGCTCGAGACAAACATCAGCGCTGAAATAACTCATGGCAGCG,Distal Intergenic,11,77881060,77882686,1627,2,Pipox-202,10293,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,6,19193,ENSMUSG00000017453,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
19911,cg14897083,-0.00000424,0.00000263,-1.610228244,0.108365786,loss,ns,0.00000872,0.00000447,1.952304527,0.051801967,pos,ns,0.003667738,0.001309222,2.801463584,0.005406965,pos,ns,2.267046444,-0.000108247,0.000045,-2.404213938,0.016793753,neg,ns,0.940827682,Ogt,Ogt_Exon,X,101653038,101653087,101653086,101653087,50,-,TTTAAAATTAAATTTATAAATGCAGTTGTCTTGTTACAAGCCACCTTACG,"Exon (Ogt-204/Ogt, exon 4 of 4)",20,101640060,101682940,42881,1,Ogt-202,12978,Ogt-202;Ogt-206;Ogt-201;Ogt-205;Ogt-204;Ogt-207;Ogt-203,Ogt;Ogt;Ogt;Ogt;Ogt;Ogt;Ogt,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,Exon,32,33,108155,ENSMUSG00000034160,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11368,cg21001818,-0.00000514,0.00000198,-2.591474995,0.010008718,loss,ns,0.00000657,0.00000337,1.952270596,0.051806013,pos,ns,0.001917238,0.000986597,1.943284988,0.052886647,pos,ns,1.276653968,-0.0000843,0.0000339,-2.484378218,0.013505483,neg,ns,0.949493653,Galnt5,Galnt5_Intergenic_upstream,2,57820965,57821014,57820965,57820966,50,-,CGTAATAAGTCAATTTAAGTTTCTGGAAATAAAACTGGATATCCTGGGTA,Distal Intergenic,2,57997884,58045860,47977,1,Galnt5-203,-176919,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,8,241391,ENSMUSG00000026828,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10150,cg23936031,0.000209829,0.0000192,10.91606068,1.09E-23,gain,yes,-0.0000638,0.0000327,-1.952190253,0.051815592,neg,ns,0.020926986,0.009567009,2.18741151,0.029459199,pos,ns,1.530779068,-0.000906806,0.000329009,-2.756177786,0.006194401,neg,ns,0.429941252,Gm28308,Gm28308_Exon,6,52204257,52204306,52204257,52204258,50,+,CGCTCACGGAACTATGATCTCCATAATTATGCAACTGGTAGTCCGGGCCA,"Exon (Hoxa5-201/Hoxa5, exon 1 of 2)",6,52163359,52213339,49981,2,Gm28308-201,9033,Gm28308-201;Hoxa3-201;Hoxa3-203;Hoxa5-201;Hoxa6-201,Gm28308;Hoxa3;Hoxa3;Hoxa5;Hoxa6,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,30,103,,NA,mapped to different genes,6,52203658,52204321,664,*,664,70,0.680722892,0.922222222,0.105421687,5.32E-55,CpGisland,TRUE,U3,Pr-B
10779,cg14894872,-0.00000171,0.00000243,-0.702229909,0.483062718,loss,ns,-0.00000807,0.00000413,-1.952033341,0.051834305,neg,ns,-0.002435116,0.001210806,-2.011153131,0.045174637,neg,ns,1.345105325,0.0000549,0.0000416,1.318325993,0.188367759,pos,ns,0.933502182,Vti1a,Vti1a_Intron,19,55384650,55384699,55384650,55384651,50,-,CGATAATGTGTAAAGGGCGTTTAATAGAGTTCAGCATTTATTCGTTATCT,"Intron (Vti1a-206/Vti1a, intron 4 of 7)",19,55316295,55577001,260707,1,Vti1a-206,68355,Vti1a-206;Vti1a-205;Vti1a-202;Vti1a-201;Vti1a-203,Vti1a;Vti1a;Vti1a;Vti1a;Vti1a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,32,53611,ENSMUSG00000024983,conserved gene and region,19,55384643,55384823,181,*,181,12,0.486187845,1.12248062,0.066298343,0.0000002,CpGisland,TRUE,U11,Tr-P
11229,cg12027886,-0.00000131,0.00000295,-0.443162336,0.657957421,loss,ns,0.00000977,0.00000501,1.95198496,0.051840076,pos,ns,0.003818585,0.001466565,2.603761779,0.00966448,pos,ns,2.01482149,-0.000103067,0.0000504,-2.043553139,0.041842769,neg,ns,0.930021141,Satb2,Satb2_Intergenic_upstream,1,57083319,57083368,57083367,57083368,50,+,GCGTGATTCACAGATATGATTGCATCTAATTTCAGAAATAAGTGGAACCG,Distal Intergenic,1,56969740,56978650,8911,2,Satb2-204,-104669,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,33,212712,ENSMUSG00000038331,mapped to different genes,1,57083151,57083321,171,*,171,10,0.532163743,0.855855856,0.058479532,0.00000878,CpGisland,TRUE,U15,NS
18426,cg01692291,-0.0000065,0.00000673,-0.965841091,0.334876563,loss,ns,0.0000223,0.0000114,1.951662396,0.051878566,pos,ns,0.008208185,0.003350659,2.44972275,0.014849554,pos,ns,1.82828659,-0.000308538,0.000115229,-2.677608521,0.00780999,neg,ns,0.892145148,U2surp,U2surp_Exon,9,95488781,95488830,95488781,95488782,50,-,CGACAGAGTCTGTATATGAAGTCACATCAGATAATAAACATAGAATATGT,"Exon (U2surp-202/U2surp, exon 13 of 28)",9,95456898,95511894,54997,2,U2surp-202,23064,U2surp-202;U2surp-201;U2surp-208;U2surp-209;U2surp-203;U2surp-207,U2surp;U2surp;U2surp;U2surp;U2surp;U2surp,0;0;0;0;23029;23026,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,6,67958,ENSMUSG00000032407,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12147,cg17556472,-0.00000318,0.00000263,-1.208595127,0.227739502,loss,ns,-0.00000872,0.00000447,-1.951444703,0.051904556,neg,ns,-0.003923775,0.001309129,-2.997241764,0.002944544,neg,ns,2.530981916,0.0000279,0.000045,0.619389717,0.536114594,pos,ns,0.935301623,Zfp618,Zfp618_Exon,4,63133129,63133178,63133129,63133130,50,+,CGGGCCAAGAAGATGAACCTCATCCAGAGCCTCAACAAGCACCTGCTCAG,"Exon (Zfp618-203/Zfp618, exon 15 of 15)",4,62965573,63139708,174136,1,Zfp618-203,167556,Zfp618-203;Zfp618-202,Zfp618;Zfp618,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,12,72701,ENSMUSG00000028358,conserved gene and region,4,63132931,63133130,200,*,200,14,0.625,0.717213115,0.07,6.89E-09,CpGisland,TRUE,NA,NRS
19031,cg16526667,-0.000000784,0.00000253,-0.309504112,0.757146017,loss,ns,-0.00000839,0.0000043,-1.95134988,0.05191588,neg,ns,0.003074681,0.001260348,2.439550073,0.015265956,pos,ns,1.816275998,-0.000108932,0.0000433,-2.513231144,0.012470036,neg,ns,0.954871925,Cdk12,Cdk12_Exon,11,98245633,98245682,98245633,98245634,50,+,CGAAGAACTCCCACAATGCCACAGGAGGAGGCAGCAGGTAAACAGACCGG,"Exon (Cdk12-203/Cdk12, exon 13 of 14)",11,98203059,98251564,48506,1,Cdk12-203,42574,Cdk12-203;Cdk12-201;Cdk12-202;Cdk12-206,Cdk12;Cdk12;Cdk12;Cdk12,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,25,69131,ENSMUSG00000003119,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16046,cg09709853,-0.0000129,0.0000078,-1.658154579,0.098297749,loss,ns,0.0000259,0.0000133,1.951339618,0.051917106,pos,ns,0.019077073,0.003882605,4.913472671,0.00000145,pos,ns,5.838145944,-0.000586115,0.000133522,-4.38963913,0.0000156,neg,ns,0.821751103,Tmem161b,Tmem161b_threeUTR,13,84284083,84284132,84284131,84284132,50,-,TGCATCTGGATGCCCTGAATTTGGCAACAGAAAAAATTACACAGTAAGCG,3' UTR,13,84222300,84296141,73842,1,Tmem161b-201,61783,Gm46432-201;Tmem161b-204;Tmem161b-201;Tmem161b-203;Tmem161b-202;Tmem161b-206;Tmem161b-209,Gm46432;Tmem161b;Tmem161b;Tmem161b;Tmem161b;Tmem161b;Tmem161b,-2267;61787;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,TRUE,FALSE,threeUTR,1,2,72745,ENSMUSG00000035762,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4880,cg26755976,0.0000106,0.00000416,2.55014799,0.011248524,gain,ns,-0.0000138,0.00000707,-1.951180447,0.051936119,neg,ns,-0.000965528,0.00207091,-0.466233896,0.641375531,neg,ns,0.192887613,-0.000127195,0.0000712,-1.785989074,0.075078345,neg,ns,0.798597326,Trim54,Trim54_Exon,5,31132102,31132151,31132102,31132103,50,+,CGGTGCCCACAAGGACTGTGAGGTGGCCCCACTGCCCACCATTTACAAAC,"Exon (Trim54-201/Trim54, exon 3 of 9)",5,31116712,31137628,20917,1,Trim54-201,15390,Trim54-201;Trim54-202,Trim54;Trim54,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,58522,ENSMUSG00000062077,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7544,cg23899468,-0.0000109,0.00000625,-1.740371844,0.082786044,loss,ns,0.0000207,0.0000106,1.951086702,0.05194732,pos,ns,0.009630777,0.003108226,3.09848009,0.002123363,pos,ns,2.672975791,-0.000343277,0.000106892,-3.211444356,0.001459368,neg,ns,0.886124068,Sobp,Sobp_Intron,10,43100487,43100536,43100487,43100488,50,-,CGGAAGCTTTGATTTTAATGAAACTCATTAAGGAAAGAAATTAACAGAAA,"Intron (Sobp-201/Sobp, intron 4 of 6)",10,43002500,43174530,172031,2,Sobp-201,73994,Sobp-201,Sobp,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,19,109205,ENSMUSG00000038248,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19699,cg17041137,-0.0000102,0.00000354,-2.891602635,0.004103759,loss,ns,0.0000117,0.00000601,1.951030546,0.051954031,pos,ns,0.004602853,0.00176202,2.612258534,0.00943267,pos,ns,2.025365367,-0.000125415,0.0000606,-2.069706566,0.039307925,neg,ns,0.919173842,Stag1,Stag1_Exon,9,100757735,100757784,100757783,100757784,50,-,ATCGCACTTCTGGATTTAATCAACTTTTTTATCCAGTGTTCAGGATGTCG,"Exon (Stag1-206/Stag1, exon 5 of 34)",9,100643448,100796791,153344,1,Stag1-213,114287,Stag1-213;Stag1-206;Stag1-201;Stag1-208;Stag1-216;Stag1-203;Stag1-207,Stag1;Stag1;Stag1;Stag1;Stag1;Stag1;Stag1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,15,20842,ENSMUSG00000037286,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4477,cg03130174,0.0000198,0.0000137,1.443478719,0.149895428,gain,ns,-0.0000454,0.0000233,-1.950960462,0.051962407,neg,ns,-0.005628171,0.006820574,-0.825175484,0.409906495,neg,ns,0.3873152,0.000212056,0.000234559,0.904060924,0.366665107,pos,ns,0.309282705,Srsf3,Srsf3_threeUTR,17,29039660,29039709,29039660,29039661,50,-,CGGCAGCAGCCACCTCGACCGCCCACACATTCCTGGCCAATCAGCTCAGC,Promoter (<=1kb),17,29039694,29041731,2038,1,Srsf3-207,0,Srsf3-202;Srsf3-201;Srsf3-204;Srsf3-210;Srsf3-209;Srsf3-208;Srsf3-203;Srsf3-206;Srsf3-205;Srsf3-207,Srsf3;Srsf3;Srsf3;Srsf3;Srsf3;Srsf3;Srsf3;Srsf3;Srsf3;Srsf3,0;0;0;6987;6971;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,7,20383,ENSMUSG00000071172,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11832,cg21349273,0.00000661,0.00000738,0.89578323,0.37106359,gain,ns,0.0000245,0.0000125,1.950881022,0.051971903,pos,ns,0.003820174,0.003671822,1.040403067,0.298963422,pos,ns,0.524381944,-0.000168374,0.000126274,-1.333403219,0.183378478,neg,ns,0.744840741,Slc6a7,Slc6a7_Exon,18,61005746,61005795,61005794,61005795,50,-,AGGAACACGATGACCCAGGCCAGCAGCAGGCAGAGGCAGAGGTTCCAGCG,"Exon (Slc6a7-201/Slc6a7, exon 5 of 14)",18,60995380,61014222,18843,2,Slc6a7-201,8427,Slc6a7-201;Slc6a7-202,Slc6a7;Slc6a7,0;8411,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,240332,ENSMUSG00000052026,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5280,cg02480322,-0.0000053,0.0000041,-1.292904847,0.197006698,loss,ns,0.0000136,0.00000697,1.950774202,0.051984674,pos,ns,0.005358204,0.002041448,2.624708058,0.009102016,pos,ns,2.040862422,-0.000161222,0.0000702,-2.296437333,0.022317582,neg,ns,0.927862521,Ranbp17,Ranbp17_Intron,11,33300034,33300083,33300082,33300083,50,+,GCAAAATCATTCTGTTAAAGTGCTGTTTGCAACATTTGGCACTTAGTGCG,"Intron (Ranbp17-202/Ranbp17, intron 19 of 27)",11,33211795,33513746,301952,2,Ranbp17-202,213663,Ranbp17-202;Ranbp17-206;Ranbp17-203;Ranbp17-205,Ranbp17;Ranbp17;Ranbp17;Ranbp17,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,31,66011,ENSMUSG00000040594,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3585,cg19803648,0.00000958,0.00000599,1.598910368,0.110859201,gain,ns,0.0000199,0.0000102,1.95074889,0.051987701,pos,ns,0.001193443,0.002983102,0.400067863,0.689382067,pos,ns,0.161540018,0.00000242,0.000102589,0.023558775,0.981219713,pos,ns,0.640327457,Rps24,Rps24_Exon,14,24617467,24617516,24617467,24617468,50,+,CGTTCAAAAGCCACTGGGCACTGAGCGAATTAAGCCATGCTTGTCTCCGT,"Exon (4930542C16Rik-203/4930542C16Rik-203, exon 1 of 5)",14,24491149,24491989,841,1,Rps24-209,126318,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,12,20088,ENSMUSG00000025290,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25683,cg04504957,-0.0000231,0.0000132,-1.745881033,0.081822273,loss,ns,0.0000438,0.0000225,1.95068431,0.051995423,pos,ns,0.005706767,0.006581421,0.867102618,0.386556457,pos,ns,0.412787068,-0.000131889,0.000226335,-0.582715163,0.560508675,neg,ns,0.599017106,Lmo3,Lmo3_threeUTR,6,138377252,138377301,138377300,138377301,50,-,TGGCACGCATCACCATCTCAAAGGCAGGGATGAGCTTACTACAGGCAGCG,3' UTR,6,138362918,138581968,219051,2,Lmo3-204,204667,Lmo3-204;Lmo3-207;Lmo3-201;Lmo3-206;Lmo3-202;Lmo3-208;Lmo3-203,Lmo3;Lmo3;Lmo3;Lmo3;Lmo3;Lmo3;Lmo3,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,38,109593,ENSMUSG00000030226,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7235,cg04411639,-0.0000244,0.00000837,-2.910944265,0.003864496,loss,ns,0.0000277,0.0000142,1.950560525,0.052010228,pos,ns,-0.00336157,0.004166093,-0.806887973,0.420349646,neg,ns,0.376389314,0.0000498,0.000143272,0.347351926,0.728562649,pos,ns,0.643114512,Cntfr,Cntfr_Intron,4,41677437,41677486,41677485,41677486,50,+,TTCTTCATCAAAGTCGCCTCCATCAGCCTGATGAGTTACTGTAAGGGCCG,"Intron (Cntfr-203/Cntfr, intron 2 of 9)",4,41657498,41695442,37945,2,Cntfr-203,17956,Cntfr-203;Cntfr-204;Cntfr-201;Cntfr-202;Cntfr-205,Cntfr;Cntfr;Cntfr;Cntfr;Cntfr,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,12,12804,ENSMUSG00000028444,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22218,cg17721885,0.0000161,0.0000161,1.001619322,0.317308668,gain,ns,0.0000533,0.0000273,1.950434356,0.052025322,pos,ns,0.00999992,0.008012035,1.248112476,0.212931742,pos,ns,0.671759592,-0.000227457,0.000275533,-0.825515448,0.409713837,neg,ns,0.949321998,Gm26897,Gm26897_Intergenic_downstream,5,111958149,111958198,111958149,111958150,50,-,CGAAATGAAATAATTTTGTTGTTCAGTTCCGAGCGATTTTGTAATTTCAT,Distal Intergenic,5,111733924,111734574,651,1,Gm26897-201,224274,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,11,23,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5409,cg17894202,0.0000634,0.0000146,4.327178323,0.0000204,gain,ns,-0.0000485,0.0000249,-1.950389323,0.05203071,neg,ns,0.031765581,0.007287756,4.35876045,0.0000178,pos,ns,4.749236133,-0.001037298,0.000250625,-4.13883787,0.000045,neg,ns,0.299885862,Rbpms,Rbpms_fiveUTR,8,33834370,33834419,33834370,33834371,50,+,CGAGTTTGTTCTTGGCCATCTTCGTGTTTGCCTTAGCAAACTCTAGTCGT,5' UTR,8,33782643,33929863,147221,2,Rbpms-203,95444,Rbpms-203;Rbpms-213;Rbpms-201;Rbpms-208;Rbpms-205;Rbpms-204;Rbpms-202;Rbpms-209;Rbpms-210;Rbpms-214,Rbpms;Rbpms;Rbpms;Rbpms;Rbpms;Rbpms;Rbpms;Rbpms;Rbpms;Rbpms,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,5,19663,ENSMUSG00000031586,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
2565,cg10604853,0.000043,0.00000444,9.684615637,1.50E-19,gain,yes,-0.0000147,0.00000754,-1.950186692,0.052054961,neg,ns,-0.001831981,0.002210166,-0.828888294,0.407805366,neg,ns,0.389547064,0.0000203,0.000076,0.267219104,0.789478152,pos,ns,0.863422731,Usp54,Usp54_Exon,14,20564970,20565019,20564970,20564971,50,-,CGTGCTTTTCGAATACTGATTTGCAACTTCTTATCGACTAGGGCTCTGCT,"Exon (1810062O18Rik-203/1810062O18Rik-203, exon 3 of 3)",14,20548912,20618354,69443,2,Usp54-202,53335,Usp54-202;Usp54-201,Usp54;Usp54,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,9,78787,ENSMUSG00000034235,mapped to different genes,14,20564798,20565024,227,*,227,12,0.568281938,0.656702025,0.052863436,0.00000219,CpGisland,TRUE,NA,NRS
10130,cg20756283,0.00000161,0.00000643,0.250005808,0.80274845,gain,ns,0.0000213,0.0000109,1.950157028,0.052058512,pos,ns,0.007255931,0.003199879,2.267564163,0.024043903,pos,ns,1.618995027,-0.000191428,0.000110044,-1.739567989,0.082927439,neg,ns,0.931258487,Gls,Gls_Exon,1,52200615,52200664,52200663,52200664,50,+,TACCTCGGCGAAGTTTACAAAGCAGTAAGTTGTAGATCTGAAATCAAACG,"Exon (Gls-210/Gls, exon 6 of 11)",1,52163448,52233223,69776,2,Gls-204,32559,Gls-204;Gls-203;Gls-202;Gls-201;Gls-216;Gls-205;Gls-210;Gls-214;Gls-213;Gls-212,Gls;Gls;Gls;Gls;Gls;Gls;Gls;Gls;Gls;Gls,0;0;0;0;0;-3241;0;-241;14930;13869,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,6,14660,ENSMUSG00000026103,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4231,cg09839785,-0.0000247,0.00000595,-4.155932598,0.000042,loss,ns,-0.0000197,0.0000101,-1.949574761,0.052128255,neg,ns,-0.008951825,0.00296386,-3.020326211,0.002735084,neg,ns,2.56302941,-0.000104764,0.000101927,-1.027838014,0.304827339,neg,ns,0.863296844,Trio,Trio_threeUTR,15,27744071,27744120,27744119,27744120,50,-,TGTTCTGCTGGTTGCTGGCCAGAATTTGAACGACCTCTCCTTGGTAGACG,3' UTR,15,27730651,28025848,295198,2,Trio-201,281728,Trio-212;Trio-201;Trio-208;Trio-206;Trio-214;Trio-211;Trio-205,Trio;Trio;Trio;Trio;Trio;Trio;Trio,-1748;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,8,11,223435,ENSMUSG00000022263,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12995,cg27641089,-0.00000313,0.00000255,-1.227889784,0.220419846,loss,ns,0.00000844,0.00000433,1.949007646,0.052196258,pos,ns,0.003635363,0.001268668,2.865496647,0.004448127,pos,ns,2.351822862,-0.000129909,0.0000436,-2.977568986,0.00313455,neg,ns,0.948625895,Khdrbs3,Khdrbs3_threeUTR,15,69093991,69094040,69093991,69093992,50,-,CGCCAAGGCTGAGGATGTGTAACCCTTAAACGGTCTTCATTTTCAAAGGT,3' UTR,15,68928432,69101211,172780,1,Khdrbs3-204,165559,Khdrbs3-201;Khdrbs3-204;Khdrbs3-206;Khdrbs3-202,Khdrbs3;Khdrbs3;Khdrbs3;Khdrbs3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,5,13992,ENSMUSG00000022332,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2080,cg06674865,-0.00000312,0.00000476,-0.654945243,0.51298868,loss,ns,0.0000157,0.00000808,1.948597848,0.052245443,pos,ns,0.004200537,0.002367681,1.774114377,0.077025735,pos,ns,1.113364151,-0.00018583,0.0000814,-2.282245391,0.023152095,neg,ns,0.893221016,Wnt2,Wnt2_Intron,6,18024292,18024341,18024340,18024341,50,+,GCAATAACTACATTAAATTATTTTAATAATCTGTAGTAACTCATAACACG,"Intron (Wnt2-201/Wnt2, intron 2 of 4)",6,17988940,18030585,41646,2,Wnt2-201,6244,Wnt2-201,Wnt2,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,2,22413,ENSMUSG00000010797,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3835,cg15215577,-0.00000866,0.00000294,-2.94234431,0.003503051,loss,ns,0.00000974,0.000005,1.948494312,0.052257876,pos,ns,0.000949742,0.001464343,0.648578946,0.517090714,pos,ns,0.286433261,0.0000327,0.0000504,0.648646342,0.517047199,pos,ns,0.926649469,Fgfr1,Fgfr1_threeUTR,8,25563378,25563427,25563378,25563379,50,-,CGGGGATTAATAGCTCGGATGCGGAGGTGCTGACCCTGTTCAATGTGACA,Promoter (<=1kb),8,25563405,25574785,11381,1,Fgfr1-206,0,Fgfr1-201;Fgfr1-214;Fgfr1-215;Fgfr1-203;Fgfr1-202;Fgfr1-213;Fgfr1-208;Fgfr1-209;Fgfr1-206;Fgfr1-216;Fgfr1-204;Fgfr1-219,Fgfr1;Fgfr1;Fgfr1;Fgfr1;Fgfr1;Fgfr1;Fgfr1;Fgfr1;Fgfr1;Fgfr1;Fgfr1;Fgfr1,0;0;0;0;0;0;0;0;0;-2573;-3423;-3439,TRUE,FALSE,TRUE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,7,8,14182,ENSMUSG00000031565,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3691,cg18572871,-0.0000252,0.0000102,-2.470390959,0.014034387,loss,ns,-0.0000338,0.0000173,-1.948493489,0.052257975,neg,ns,-0.0003987,0.005080555,-0.078475658,0.937500322,neg,ns,0.028028574,-0.000211668,0.00017472,-1.211470605,0.226637753,neg,ns,0.311562162,Lpp,Lpp_Intergenic_downstream,16,25059415,25059464,25059415,25059416,50,+,CGCGGGGCTTGATGTCTGCAAAATGTCGGAAACGCAGCCAAGAGCTGCTA,Distal Intergenic,16,24845175,24979450,134276,1,Lpp-206,214240,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,7,210126,ENSMUSG00000033306,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
6484,cg24751122,0.0000352,0.0000119,2.961811491,0.003294771,gain,ns,-0.0000394,0.0000202,-1.948455228,0.05226257,neg,ns,-0.01209224,0.005923331,-2.041459326,0.042051585,neg,ns,1.376217627,0.000437791,0.000203703,2.149163085,0.032395388,pos,ns,0.664115265,Robo3,Robo3_Intergenic_upstream,9,37454344,37454393,37454344,37454345,50,-,CGTCTGCATTATGGATTAACCCATCTGGGCCTGGGAGATTGGCTCTGAAA,Distal Intergenic,9,37416045,37433246,17202,2,Robo3-202,-21147,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,19649,ENSMUSG00000032128,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
10471,cg09207552,0.00000659,0.00000611,1.079099177,0.281382405,gain,ns,0.0000202,0.0000104,1.948389464,0.052270469,pos,ns,-0.00116732,0.003038913,-0.384124219,0.701149726,neg,ns,0.154189231,-0.0000604,0.000104508,-0.577703636,0.563883586,neg,ns,0.77851601,Npas3,Npas3_Intron,12,53768286,53768335,53768286,53768287,50,-,CGATTGGTTAATTTGATAATTCTATCACCAATCAGCTGGTGTCTGACCTT,"Intron (Npas3-204/Npas3, intron 3 of 10)",12,53248157,54069532,821376,1,Npas3-204,520129,Npas3-204;Npas3-201;Npas3-203,Npas3;Npas3;Npas3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,83,103,27386,ENSMUSG00000021010,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24404,cg08519822,-0.0000223,0.00000816,-2.737979698,0.006539043,loss,ns,0.000027,0.0000139,1.948335666,0.052276932,pos,ns,-0.00212252,0.004059788,-0.52281553,0.601476082,neg,ns,0.220781638,0.00000119,0.000139616,0.008539324,0.99319218,pos,ns,0.628772823,Zc3h12a,Zc3h12a_Intergenic_upstream,4,125248814,125248863,125248862,125248863,50,-,ATAGAAATCTATATTCTATTCTTCCATGCGTCCACTCCACCCTTCTCACG,Distal Intergenic,4,125118423,125127840,9418,2,Zc3h12a-201,-121023,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,5,230738,ENSMUSG00000042677,mapped to different genes,4,125248842,125248929,88,*,88,8,0.636363636,0.977777778,0.090909091,0.00000452,CpGisland,TRUE,NA,NRS
1713,cg15784427,-0.00000667,0.00000528,-1.262090913,0.207864773,loss,ns,0.0000175,0.00000898,1.948312551,0.052279709,pos,ns,0.011431738,0.002630065,4.346561072,0.0000188,pos,ns,4.726459451,-0.000463387,0.0000904,-5.123262977,0.000000529,neg,yes,0.828958375,Ppp1r3a,Ppp1r3a_Intron,6,14720540,14720589,14720588,14720589,50,+,CCTCATAACTGACATTTGCATGATCTCAATAATTATATGCAAATCTTACG,"Intron (Ppp1r3a-201/Ppp1r3a, intron 3 of 3)",6,14713977,14755274,41298,2,Ppp1r3a-201,34685,Ppp1r3a-201,Ppp1r3a,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,3,140491,ENSMUSG00000042717,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2203,cg05958024,-0.00000215,0.00000186,-1.151394783,0.250457114,loss,ns,-0.00000617,0.00000317,-1.948208812,0.052292173,neg,ns,-0.000255055,0.000927804,-0.274901416,0.7835751,neg,ns,0.105919373,-0.0000135,0.0000319,-0.421698811,0.673537143,neg,ns,0.944527672,Nhsl1,Nhsl1_Exon,10,18516058,18516107,18516058,18516059,50,+,CGGCGGTCTCTAATTTACACAGACACTCTGGTAAGACGACCGAAGAAAGT,"Exon (Nhsl1-208/Nhsl1, exon 5 of 6)",10,18318985,18531973,212989,1,Nhsl1-209,197073,Nhsl1-209;Nhsl1-203;Nhsl1-206;Nhsl1-201;Nhsl1-208;Nhsl1-202,Nhsl1;Nhsl1;Nhsl1;Nhsl1;Nhsl1;Nhsl1,0;0;108383;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,215819,ENSMUSG00000039835,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7294,cg06174133,-0.00000217,0.00000206,-1.056700877,0.291470897,loss,ns,0.00000681,0.00000349,1.948189298,0.052294518,pos,ns,0.003653176,0.001023483,3.56935597,0.000414558,pos,ns,3.382414745,-0.0000956,0.0000352,-2.714775798,0.007003589,neg,ns,0.96223894,Hivep1,Hivep1_Exon,13,42154873,42154922,42154873,42154874,50,+,CGATGTCTTACTGAAAGCAATGGAGCCAGAACTGAGCACCTTGTCACAAA,"Exon (Hivep1-201/Hivep1, exon 4 of 9)",13,42052021,42185026,133006,1,Hivep1-201,102852,Hivep1-201;Hivep1-202;Hivep1-204,Hivep1;Hivep1;Hivep1,0;0;-2212,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,6,110521,ENSMUSG00000021366,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12263,cg06363517,0.0000731,0.00000479,15.27731954,1.14E-39,gain,yes,-0.0000158,0.00000813,-1.948177533,0.052295932,neg,ns,0.003324103,0.002382147,1.395423203,0.163887026,pos,ns,0.785455424,-0.0000938,0.0000819,-1.145225238,0.252999228,neg,ns,0.105261948,Xkr6,Xkr6_Exon,14,63607249,63607298,63607297,63607298,50,-,GGTCATCCACCTGCTGCAGATGGGGCAGGTGTGGAGGTAAGAGCACTGCG,Promoter (<=1kb),14,63606503,63820809,214307,1,Xkr6-201,746,Xkr6-201;Xkr6-203;Xkr6-205,Xkr6;Xkr6;Xkr6,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,11,219149,ENSMUSG00000035067,conserved gene and region,14,63607297,63607466,170,*,170,16,0.705882353,0.77294686,0.094117647,4.31E-12,CpGisland,TRUE,NA,NRS
26515,cg24869569,-0.00000272,0.0000165,-0.16445374,0.869481138,loss,ns,-0.0000547,0.0000281,-1.948091301,0.052306295,neg,ns,-0.019076364,0.008221686,-2.320249679,0.020976337,neg,ns,1.678270339,0.000770299,0.000282743,2.724377596,0.006807862,pos,ns,0.770494168,Casz1,Casz1_Intron,4,148860758,148860807,148860758,148860759,50,-,CGTTAATTCCCATTTTGCCAACACCAGGGGCCCAGGCAGACGAGTTACCA,"Intron (Casz1-201/Casz1, intron 2 of 15)",4,148804429,148945129,140701,1,Casz1-201,56329,Casz1-201;Casz1-202,Casz1;Casz1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,94,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
27242,cg20482371,-0.000000916,0.000000989,-0.926487299,0.354913513,loss,ns,0.00000327,0.00000168,1.948044763,0.052311888,pos,ns,0.001012873,0.000492136,2.058115159,0.040414752,pos,ns,1.393460082,-0.0000259,0.0000169,-1.531630904,0.126633367,neg,ns,0.970148646,Suco,Suco_Exon,1,161834051,161834100,161834099,161834100,50,-,TCCAGATAGCGACCACTGAGAGACATGTTAACTTCTAAGGCTTTAATACG,"Exon (Suco-201/Suco, exon 18 of 24)",1,161816114,161876682,60569,2,Suco-201,42582,Suco-201;Suco-202;Suco-207;Suco-206,Suco;Suco;Suco;Suco,0;-4781;10693;10253,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,226551,ENSMUSG00000040297,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27168,cg04303199,-0.000000567,0.00000224,-0.253574837,0.799992128,loss,ns,0.0000074,0.0000038,1.947863866,0.052333636,pos,ns,0.002700441,0.001113597,2.424970646,0.015880748,pos,ns,1.799129047,-0.0000796,0.0000383,-2.077500494,0.038578337,neg,ns,0.94359299,Gm11446,Gm11446_Intergenic_upstream,2,159884816,159884865,159884816,159884817,50,-,CGATACATTGGATTTATAGAGTGTTTGCCTGAATTAAAATGCGAAATTTT,Distal Intergenic,2,159858425,159859290,866,2,Gm11446-201,-25575,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,100418024,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27634,cg25050378,0.00000481,0.0000027,1.778874388,0.076240206,gain,ns,-0.00000894,0.00000459,-1.947752828,0.052346989,neg,ns,-0.0000942,0.001344453,-0.070040443,0.94420663,neg,ns,0.024932955,-0.00000431,0.0000462,-0.093122828,0.925866136,neg,ns,0.926962275,Ppp4r1l-ps,Ppp4r1l-ps_Exon,2,173615938,173615987,173615986,173615987,50,+,GTATACATTATAAATAATTCTTTCATAAATGCACTCCGCCACAATCCACG,"Exon (Ppp4r1l-ps-205/Ppp4r1l-ps, exon 3 of 15)",2,173579320,173659539,80220,2,Ppp4r1l-ps-205,43552,Ppp4r1l-ps-205;Ppp4r1l-ps-210;Ppp4r1l-ps-202;Ppp4r1l-ps-211;Ppp4r1l-ps-207;Ppp4r1l-ps-206;Ppp4r1l-ps-204;Ppp4r1l-ps-208;Ppp4r1l-ps-203,Ppp4r1l-ps;Ppp4r1l-ps;Ppp4r1l-ps;Ppp4r1l-ps;Ppp4r1l-ps;Ppp4r1l-ps;Ppp4r1l-ps;Ppp4r1l-ps;Ppp4r1l-ps,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,100043911,ENSMUSG00000055897,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25244,cg14560536,-0.000000481,0.00000164,-0.292843966,0.769837341,loss,ns,0.00000543,0.00000279,1.947277167,0.052404222,pos,ns,0.001378275,0.000816911,1.687178361,0.092574958,pos,ns,1.033506475,-0.0000249,0.0000281,-0.885630661,0.376503037,neg,ns,0.968145728,Nox1,Nox1_Exon,X,134157323,134157372,134157323,134157324,50,-,CGGTGCATAGCCAGGGTCCGGATGGAGTGGCCCACCTCCCATTCTATCAG,"Exon (Xkrx-201/Xkrx, exon 2 of 3)",20,134107733,134221956,114224,2,Nox1-205,64584,Nox1-205;Xkrx-201;Xkrx-202,Nox1;Xkrx;Xkrx,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,237038,ENSMUSG00000031257,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7678,cg14030728,-0.0000183,0.00000921,-1.981849264,0.048379069,loss,ns,0.0000305,0.0000156,1.947214022,0.052411823,pos,ns,0.020513686,0.004583791,4.475266504,0.0000107,pos,ns,4.969322897,-0.000515458,0.000157636,-3.269922859,0.001196827,neg,ns,0.53394833,Npr2,Npr2_Exon,4,43632736,43632785,43632736,43632737,50,-,CGAGGGCGTCTTTGAGGCCCTGCAGGGCAGCAACCTCAGTGTGCAGCACC,Promoter (<=1kb),4,43631935,43651244,19310,1,Npr2-201,801,Npr2-201;Npr2-202,Npr2;Npr2,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,10,230103,ENSMUSG00000028469,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
6318,cg26223723,-0.00000129,0.00000243,-0.532643768,0.594661783,loss,ns,0.00000803,0.00000413,1.947159854,0.052418345,pos,ns,0.001650477,0.001208857,1.365320136,0.173142386,pos,ns,0.761596603,-0.0000873,0.0000416,-2.100310143,0.036509227,neg,ns,0.943125449,Tenm2,Tenm2_Intron,11,36887638,36887687,36887638,36887639,50,-,CGCATTGGCTGATAAACACTTCAAAGTAAACCGCTCATAAATATGAAATG,"Intron (Tenm2-202/Tenm2, intron 3 of 30)",11,36006656,37235882,1229227,2,Tenm2-202,348195,Tenm2-202;Tenm2-208;Tenm2-201;Tenm2-204,Tenm2;Tenm2;Tenm2;Tenm2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,47,84,23964,ENSMUSG00000049336,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13421,cg13915277,0.00000373,0.000013,0.286374375,0.774782687,gain,ns,0.0000431,0.0000221,1.947141577,0.052420546,pos,ns,0.002015062,0.006478876,0.311020296,0.755994224,pos,ns,0.121481522,0.000194733,0.000222808,0.87399309,0.382798572,pos,ns,0.356432663,Rpl9-ps7,Rpl9-ps7_Intergenic_upstream,2,70444268,70444317,70444268,70444269,50,+,CGTGAAATTCAGATTAGCCCTCCCCAGGCTGTGAGAGGAAGGGGGTATTG,Distal Intergenic,2,70458982,70459560,579,1,Rpl9-ps7-201,-14665,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,100040021,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7928,cg18135023,0.0000345,0.00000683,5.050642447,0.000000753,gain,yes,0.0000226,0.0000116,1.946954546,0.05244307,pos,ns,-0.00282602,0.003398841,-0.831465956,0.406350433,neg,ns,0.391099273,0.000196078,0.000116886,1.677521177,0.094448513,pos,ns,0.810007878,Hif1an,Hif1an_Intron,19,44633994,44634043,44634042,44634043,50,+,GAATCTGAATTCTGCTGAGCCTTGAAATGGCCAGCACTTTATCCTGATCG,"Intron (Gm35460-201/Gm35460-201, intron 3 of 6)",19,44562850,44576274,13425,1,Hif1an-201,71144,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,31,319594,ENSMUSG00000036450,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9480,cg00340124,0.000029,0.0000159,1.818240356,0.069992385,gain,ns,0.0000527,0.0000271,1.946886598,0.052451255,pos,ns,-0.018241208,0.007937774,-2.298025801,0.022225833,neg,ns,1.65314195,0.000979395,0.000272979,3.587799655,0.000387407,pos,ns,0.538204208,Gm49155,Gm49155_Intron,14,48854668,48854717,48854668,48854669,50,+,CGCGTGACAGTGCAATGCAAAGACACTAGCATGCTTATCTTGCCTAACCA,"Intron (Otx2os1-206/Otx2os1-206, intron 2 of 4)",14,48867329,48867800,472,2,Gm49155-201,13083,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,4,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17969,cg15852492,0.000000697,0.00000437,0.159410761,0.873449071,gain,ns,-0.0000145,0.00000743,-1.946869515,0.052453313,neg,ns,0.000728004,0.002176971,0.334411433,0.738295246,pos,ns,0.131769928,-0.0000881,0.0000749,-1.177075601,0.240068291,neg,ns,0.913300218,Prdm11,Prdm11_Exon,2,92989582,92989631,92989630,92989631,50,+,GTGACAAGAATGTCCAGCTCCTCCTTGGAGAACTTGGGCTTCCTCTTACG,"Exon (Prdm11-201/Prdm11, exon 5 of 6)",2,92972018,93045571,73554,2,Prdm11-202,55940,Prdm11-202;Prdm11-206;Prdm11-205;Prdm11-201,Prdm11;Prdm11;Prdm11;Prdm11,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,3,100042784,ENSMUSG00000075028,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19235,cg22766890,0.000042,0.00000637,6.593817663,1.85E-10,gain,yes,0.0000211,0.0000108,1.94676789,0.052465558,pos,ns,0.009399564,0.003171748,2.963528263,0.003276958,pos,ns,2.484529132,-0.000197743,0.000109076,-1.812885803,0.070816562,neg,ns,0.271773039,Wnt11,Wnt11_Intergenic_upstream,7,98815428,98815477,98815476,98815477,50,+,AGGGGTATGATTCTCGGTTTGGGTCCGAGAGGTCCCGGGTTCAAATCCCG,Distal Intergenic,7,98835112,98846587,11476,1,Wnt11-203,-19635,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,6,22411,ENSMUSG00000015957,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
13731,cg05712938,-0.0000594,0.00000898,-6.610479451,1.67E-10,loss,yes,0.0000297,0.0000153,1.946581661,0.052488001,pos,ns,-0.002490272,0.004471697,-0.556896264,0.57800013,neg,ns,0.238072064,-0.000124009,0.000153781,-0.806399875,0.420630511,neg,ns,0.864358643,Gm4052,Gm4052_Intergenic_upstream,13,72298316,72298365,72298316,72298317,50,-,CGCTTTCCTGGCATTAGAATTCATTTTAGATGGGTCAATTGTTCCATAAT,Distal Intergenic,13,72350221,72350671,451,1,Gm4052-201,-51905,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,16,16,100042828,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22012,cg23472306,-0.000004,0.00000413,-0.969809064,0.33289772,loss,ns,0.0000137,0.00000702,1.946167162,0.052537985,pos,ns,0.006772962,0.002055256,3.295434917,0.001096642,pos,ns,2.959935007,-0.000155632,0.0000707,-2.201917537,0.028407369,neg,ns,0.887852718,Wee1,Wee1_Exon,7,110126029,110126078,110126029,110126030,50,+,CGGTATACAACAGAATTTCATGAGCTAGAGAAAATCGGCTCTGGAGAATT,"Exon (Wee1-201/Wee1, exon 4 of 11)",7,110122046,110143286,21241,1,Wee1-201,3983,Wee1-201,Wee1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,22390,ENSMUSG00000031016,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19912,cg22825789,0.00000202,0.00000754,0.267974093,0.788897478,gain,ns,0.0000249,0.0000128,1.946142848,0.052540918,pos,ns,0.002879735,0.003753095,0.767296129,0.44348946,pos,ns,0.353116697,0.0000278,0.000129069,0.215729414,0.829340544,pos,ns,0.913020698,Ogt,Ogt_Exon,X,101653094,101653143,101653094,101653095,50,-,CGCTGCAGGGGTGAGGAGTGGGGAGAAACCAGAATGCTTCTGAAACTCCC,"Exon (Ogt-204/Ogt, exon 4 of 4)",20,101640060,101682940,42881,1,Ogt-202,13034,Ogt-202;Ogt-206;Ogt-201;Ogt-205;Ogt-204;Ogt-207;Ogt-203,Ogt;Ogt;Ogt;Ogt;Ogt;Ogt;Ogt,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,Exon,32,33,108155,ENSMUSG00000034160,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24603,cg17326640,0.0000252,0.00000331,7.635155191,2.82E-13,gain,yes,0.0000109,0.00000562,1.946112201,0.052544616,pos,ns,0.003514565,0.001645628,2.135698465,0.033487338,pos,ns,1.475119376,0.0000961,0.0000566,1.697850791,0.090539441,pos,ns,0.063201536,Ccnd2,Ccnd2_Promoter,6,127152591,127152640,127152639,127152640,50,+,GCATAGCCAATAGCTCTGGGGCTCCTGCTACTGCGCGCTGATTGTTACCG,Promoter (<=1kb),6,127146023,127152193,6171,2,Ccnd2-206,-398,Ccnd2-201;Ccnd2-206;Ccnd2-208;Ccnd2-202;Ccnd2-204;Ccnd2-205,Ccnd2;Ccnd2;Ccnd2;Ccnd2;Ccnd2;Ccnd2,-1531;0;-1584;-1558;-1584;-1630,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,4,4,12444,ENSMUSG00000000184,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
25846,cg15701281,-0.0000518,0.0000141,-3.684943318,0.000269906,loss,ns,0.0000465,0.0000239,1.946017273,0.05255607,pos,ns,-0.002616727,0.006994949,-0.374088087,0.708594516,neg,ns,0.149602213,0.0000294,0.000240556,0.122315706,0.902728249,pos,ns,0.499322219,Gm42424,Gm42424_Promoter,5,139694981,139695030,139695029,139695030,50,-,TAATTAATGCCTACATTACTGCTGATAATTTAGCTAGTTAATTAAACTCG,Promoter (6-7kb),5,139701647,139702022,376,1,Gm42424-201,-6666,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,5,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14640,cg10815181,-0.000000853,0.00000207,-0.411562506,0.680944517,loss,ns,0.00000685,0.00000352,1.946001312,0.052557996,pos,ns,0.002946711,0.001030995,2.858123947,0.004550037,pos,ns,2.341985026,-0.0000747,0.0000355,-2.106158718,0.035994256,neg,ns,0.954422665,Usp25,Usp25_Exon,16,77055181,77055230,77055229,77055230,50,+,AGATTAGTTCTGAATTACAAGCCTCCATCAAATGCTCAAGATTTACCCCG,"Exon (Usp25-201/Usp25, exon 6 of 24)",16,77013706,77116780,103075,1,Usp25-201,41475,Usp25-201;Usp25-205,Usp25;Usp25,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,5,30940,ENSMUSG00000022867,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17412,cg26228774,-0.00000169,0.00000315,-0.537512458,0.591299311,loss,ns,0.0000104,0.00000534,1.945778139,0.052584933,pos,ns,0.003190848,0.001565409,2.038347931,0.042363522,pos,ns,1.373007942,-0.000104781,0.0000538,-1.946369381,0.052513595,neg,ns,0.960834879,Nrxn1,Nrxn1_Exon,17,90163798,90163847,90163798,90163799,50,+,CGAGTAGCCATTCATCAACTACTCGACCAAGTCGATATGGAATTCGCTGT,"Exon (Nrxn1-202/Nrxn1, exon 18 of 21)",17,90033631,91088907,1055277,2,Nrxn1-202,925060,Nrxn1-202;Nrxn1-207;Nrxn1-216;Nrxn1-204;Nrxn1-217;Nrxn1-209;Nrxn1-201;Nrxn1-213;Nrxn1-206;Nrxn1-223;Nrxn1-219,Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,22,27,18189,ENSMUSG00000024109,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21310,cg03799825,0.00000144,0.00000591,0.244288669,0.807168863,gain,ns,0.0000195,0.00001,1.945505959,0.052617801,pos,ns,0.005154405,0.002943546,1.751087072,0.08091996,pos,ns,1.091944343,-0.0000878,0.000101228,-0.8675312,0.386322062,neg,ns,0.900923077,Rbm15,Rbm15_Intergenic_downstream,3,107325242,107325291,107325242,107325243,50,+,CGTCACGGTGCATGCACATCCAAGGCATGTGGAACCAAAGGTCAAATAAG,Downstream (<1kb),3,107327135,107333101,5967,2,Rbm15-202,7810,Rbm15-201;Rbm15-202,Rbm15;Rbm15,0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,5,9,229700,ENSMUSG00000048109,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3000,cg03262814,-0.00000049,0.0000012,-0.409434549,0.682503543,loss,ns,0.00000396,0.00000204,1.945362656,0.052635113,pos,ns,0.001299577,0.000596234,2.179641729,0.030036307,pos,ns,1.522353469,-0.0000504,0.0000205,-2.45635036,0.014583704,neg,ns,0.973256276,Lrmda,Lrmda_Intron,14,22281823,22281872,22281823,22281824,50,+,CGGTGCTATTAATTCTCATTGCTCGGTACAGAGGCTTGATTGCATACTGT,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,262111,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206,Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14122,cg03918304,0.0000125,0.00000795,1.577850142,0.115619895,gain,ns,0.0000263,0.0000135,1.945292743,0.05264356,pos,ns,0.012923165,0.003955746,3.266935097,0.0012091,pos,ns,2.917537811,-0.000259843,0.000136038,-1.910082661,0.057045183,neg,ns,0.110931382,Hoxd10,Hoxd10_Exon,2,74692024,74692073,74692072,74692073,50,+,AGATTCCTTGATCAGTGCCTGCAGGAGTGACAGTTTTTATTCCAGCAGCG,Promoter (<=1kb),2,74691924,74695105,3182,1,Hoxd10-201,100,Hoxd10-201,Hoxd10,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,21,24,15430,ENSMUSG00000050368,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
11589,cg26373046,0.0000575,0.00000994,5.78388863,1.78E-08,gain,yes,-0.0000329,0.0000169,-1.945232965,0.052650784,neg,ns,0.024356051,0.004947626,4.922775112,0.00000139,pos,ns,5.857282299,-0.001162619,0.000170148,-6.832970839,4.41E-11,neg,yes,0.168969608,Cdk15,Cdk15_Intron,1,59316484,59316533,59316532,59316533,50,+,TGACATTAGTCAATGCATTTGCCAAATTGGCAATTAGTTCCTGATGTGCG,"Intron (Cdk15-202/Cdk15, intron 10 of 13)",1,59256906,59352993,96088,1,Cdk15-202,59578,Cdk15-202;Cdk15-201;Cdk15-204,Cdk15;Cdk15;Cdk15,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,5,271697,ENSMUSG00000026023,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1929,cg06553560,0.000086,0.0000145,5.950031403,7.24E-09,gain,yes,-0.0000478,0.0000246,-1.945086339,0.052668507,neg,ns,-0.00054436,0.007194925,-0.075658868,0.939739303,neg,ns,0.026992609,-0.00052745,0.000247433,-2.131690538,0.033818422,neg,ns,0.554214309,Rarb,Rarb_threeUTR,14,16434188,16434237,16434236,16434237,50,-,TCTGTGATTTTCATTAAGATCTTTGGAAACATGTGAGGCTTGCTGGGTCG,3' UTR,14,16430839,16575543,144705,2,Rarb-201,141306,Rarb-201;Rarb-207;Rarb-202;Top2b-201,Rarb;Rarb;Rarb;Top2b,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,16,218772,ENSMUSG00000017491,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2207,cg19605594,-0.0000855,0.00000988,-8.654185991,2.75E-16,loss,yes,0.0000326,0.0000168,1.945031223,0.05267517,pos,ns,-0.000548029,0.004916241,-0.111473194,0.911313261,neg,ns,0.04033231,-0.000447667,0.000169069,-2.647834437,0.00851527,neg,ns,0.769271105,Gm50083,Gm50083_Intergenic_downstream,18,18586987,18587036,18587035,18587036,50,+,TGCCTTTTAATGGGTCTTTGGCTGTTGCACAGAACCTGCTAATAGCATCG,Distal Intergenic,18,17828819,17829020,202,1,Gm50083-201,758168,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18942,cg20357687,-0.00000865,0.00000511,-1.692874814,0.091483945,loss,ns,0.0000169,0.00000868,1.944947125,0.052685339,pos,ns,0.00369012,0.00254317,1.450992371,0.147793119,pos,ns,0.830345785,-0.0000461,0.0000875,-0.527485956,0.598233478,neg,ns,0.844714594,Mitf,Mitf_Exon,6,97993219,97993268,97993267,97993268,50,-,TAAACATGCCAACCAAGTCCTGAGCTTGCCATGTCCAAACCAGCCTGGCG,"Exon (Mitf-207/Mitf, exon 3 of 10)",6,97807052,98018593,211542,1,Mitf-207,186167,Mitf-207;Mitf-202;Mitf-203;Mitf-204;Mitf-201;Mitf-205;Mitf-208,Mitf;Mitf;Mitf;Mitf;Mitf;Mitf;Mitf,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,16,17342,ENSMUSG00000035158,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23769,cg19091932,0.00000673,0.00000833,0.807466768,0.420016735,gain,ns,0.0000275,0.0000142,1.944888895,0.05269238,pos,ns,0.000647503,0.004147278,0.156127153,0.876034417,pos,ns,0.057478831,0.000130586,0.000142625,0.915594897,0.360591073,pos,ns,0.693495016,Rbm19,Rbm19_Intergenic_downstream,5,120294606,120294655,120294606,120294607,50,+,CGCGGATGAAATTAGCACTTCCTGCTATGTCGGGCAGATAAACTTTGCTG,Distal Intergenic,5,120175725,120197969,22245,1,Rbm19-210,118881,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,12,13,74111,ENSMUSG00000029594,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17924,cg26382362,0.0000114,0.0000151,0.756560941,0.449887524,gain,ns,0.0000499,0.0000257,1.944795428,0.052703685,pos,ns,0.001599388,0.007515329,0.212816704,0.831609811,pos,ns,0.080080396,0.00038416,0.000258452,1.486389723,0.138192372,pos,ns,0.729222503,Gm4800,Gm4800_Intergenic_upstream,10,92556906,92556955,92556906,92556907,50,-,CGATAAATTAAGTCTGCACTGCAGGTCAGTGAATTTCTATTAACTACTTA,Distal Intergenic,10,92542405,92543670,1266,2,Gm4800-201,-13285,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,216229,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11515,cg11546656,0.000100991,0.000011,9.215674618,4.85E-18,gain,yes,-0.0000362,0.0000186,-1.944790098,0.052704329,neg,ns,0.011424602,0.005454232,2.094630544,0.037015344,pos,ns,1.431618212,-0.000564029,0.000187571,-3.007023726,0.002854052,neg,ns,0.086119231,Ntrk2,Ntrk2_fiveUTR,13,58807781,58807830,58807829,58807830,50,-,ATTTTCTGGAGTTTCTGCCCCTGCTCTGCGTCAGCCCTCACGTCACTTCG,5' UTR,13,58806569,59129965,323397,1,Ntrk2-207,1212,Ntrk2-207;Ntrk2-206;Ntrk2-204;Ntrk2-201;Ntrk2-205;Ntrk2-202;Ntrk2-208;Ntrk2-209,Ntrk2;Ntrk2;Ntrk2;Ntrk2;Ntrk2;Ntrk2;Ntrk2;Ntrk2,0;1191;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,4,18212,ENSMUSG00000055254,conserved gene and region,13,58807809,58808109,301,*,301,29,0.717607973,0.7525,0.096345515,6.93E-22,CpGisland,TRUE,U3,Pr-B
5822,cg17243044,-0.000099,0.0000131,-7.582607171,3.97E-13,loss,yes,0.0000431,0.0000222,1.944558263,0.052732378,pos,ns,-0.01809816,0.006500016,-2.784325295,0.005693614,neg,ns,2.244612003,0.000683371,0.000223535,3.057108729,0.002429425,pos,ns,0.792991684,C2,C2_Exon,17,34896329,34896378,34896377,34896378,50,+,CTGTGGCAAGCAGTTCAACCACAGCAGCAACCTCAACCGCCACATGAACG,"Exon (Zbtb12-201/Zbtb12, exon 2 of 2)",17,34893353,34898265,4913,2,C2-207,1887,C2-205;C2-208;C2-207;Ehmt2-204;Ehmt2-202;Ehmt2-203;Ehmt2-201;Ehmt2-212;Zbtb12-202;Zbtb12-201,C2;C2;C2;Ehmt2;Ehmt2;Ehmt2;Ehmt2;Ehmt2;Zbtb12;Zbtb12,-782;-772;0;0;0;0;0;-3316;16846;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,12263,ENSMUSG00000024371,mapped to different genes,17,34896297,34896535,239,*,239,15,0.585774059,0.777488614,0.062761506,7.80E-09,CpGisland,TRUE,U8,En-Pd
22169,cg00772083,0.0000256,0.00000889,2.882090765,0.004226312,gain,ns,-0.0000293,0.0000151,-1.944198977,0.05277587,neg,ns,0.007763007,0.004422594,1.755306247,0.08019466,pos,ns,1.095854551,0.000148086,0.000152093,0.973654903,0.33098704,pos,ns,0.11986529,Znrf1,Znrf1_Exon,8,111537514,111537563,111537514,111537515,50,+,CGGATGCTCTACCTCTGCACATCGCACCCAGGTGGTTCAGCTCGCATAGT,"Exon (Znrf1-205/Znrf1, exon 2 of 6)",8,111536097,111625720,89624,1,Znrf1-205,1417,Znrf1-205;Znrf1-203;Znrf1-204;Znrf1-201;Znrf1-207;Znrf1-209;Znrf1-214;Znrf1-215;Znrf1-213;Znrf1-202;Znrf1-206;Znrf1-210,Znrf1;Znrf1;Znrf1;Znrf1;Znrf1;Znrf1;Znrf1;Znrf1;Znrf1;Znrf1;Znrf1;Znrf1,0;0;0;0;0;0;0;-15;-780;-780;-902;-3696,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,170737,ENSMUSG00000033545,mapped to different genes,8,111537011,111537629,619,*,619,63,0.709208401,0.809603886,0.10177706,1.63E-48,CpGisland,TRUE,NA,NRS
24672,cg17367053,0.0000925,0.00000868,10.66302509,8.03E-23,gain,yes,-0.0000287,0.0000147,-1.944158653,0.052780753,neg,ns,-0.000437312,0.004318305,-0.101269296,0.919402156,neg,ns,0.036494482,-0.000197971,0.000148506,-1.33308528,0.183482663,neg,ns,0.741107278,Tmem163,Tmem163_Exon,1,127552748,127552797,127552796,127552797,50,-,TCAGGTTACTTACTGCAAACCCAAAAGCAGAGGCGCTGTACCTCATAACG,"Exon (Tmem163-201/Tmem163, exon 3 of 9)",1,127486546,127678096,191551,2,Tmem163-201,125299,Tmem163-201;Tmem163-203;Tmem163-205,Tmem163;Tmem163;Tmem163,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,72160,ENSMUSG00000026347,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19614,cg25682293,-0.00000187,0.00000461,-0.406115825,0.684937688,loss,ns,0.0000152,0.00000783,1.943914441,0.052810335,pos,ns,0.006729432,0.002294652,2.932658534,0.003611103,pos,ns,2.442360115,-0.00021888,0.0000789,-2.773692108,0.005878314,neg,ns,0.922925193,Gm8641,Gm8641_Intergenic_upstream,9,100131162,100131211,100131210,100131211,50,+,CCGAAGGTCTGTATCATATTGGAATCTGTCAGTGCAGGTCAGGGAGTCCG,Distal Intergenic,9,99946564,99947389,826,2,Gm8641-201,-183773,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,15,667456,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15078,cg27157765,0.000134499,0.00000935,14.39063459,2.58E-36,gain,yes,-0.0000309,0.0000159,-1.943879756,0.052814538,neg,ns,-0.006239964,0.00465173,-1.341428759,0.180763159,neg,ns,0.742890077,0.000476902,0.000159973,2.981149219,0.003099156,pos,ns,0.182337138,Zfp827,Zfp827_Promoter,8,79028362,79028411,79028410,79028411,50,-,CACACACACACTCACACCTATTAGATCCGTTTCCATTGAAGAATATTACG,Promoter (<=1kb),8,79028437,79193743,165307,1,Zfp827-202,-75,Zfp827-201;Zfp827-202;Zfp827-203;Zfp827-209,Zfp827;Zfp827;Zfp827;Zfp827,0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,10,28,622675,ENSMUSG00000071064,conserved gene but different region,8,79028199,79028434,236,*,236,23,0.588983051,1.130833333,0.097457627,1.44E-17,CpGisland,TRUE,U1,Pr-A
4897,cg07024996,-0.00000883,0.00000866,-1.019102898,0.308948785,loss,ns,0.0000286,0.0000147,1.943798334,0.052824405,pos,ns,0.002701238,0.00431222,0.626414809,0.531503886,pos,ns,0.274493556,-0.0000151,0.000148297,-0.101653593,0.919097357,neg,ns,0.846554522,Zfp513,Zfp513_Exon,5,31200393,31200442,31200441,31200442,50,-,GCAAAGGGGCAGTGGGGACAGCGGTAGGGCTTCTCGCCAGTGTGGGTGCG,"Exon (Zfp513-202/Zfp513, exon 3 of 4)",5,31198981,31202303,3323,2,Zfp513-202,1861,Ppm1g-205;Ppm1g-201;Ppm1g-206;Ppm1g-203;Ppm1g-204;Snx17-201;Snx17-205;Snx17-202;Snx17-204;Snx17-210;Snx17-208;Snx17-207;Snx17-211;Snx17-209;Snx17-206;Snx17-203;Zfp513-202;Zfp513-201;Zfp513-205;Zfp513-207;Zfp513-203;Zfp513-204;Zfp513-208;Zfp513-206,Ppm1g;Ppm1g;Ppm1g;Ppm1g;Ppm1g;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Zfp513;Zfp513;Zfp513;Zfp513;Zfp513;Zfp513;Zfp513;Zfp513,0;0;4641;0;0;0;0;0;0;0;0;0;5550;0;0;0;0;0;0;-107;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,15,15,101023,ENSMUSG00000043059,conserved gene and region,5,31200414,31200657,244,*,244,21,0.68442623,0.738115817,0.086065574,6.37E-15,CpGisland,TRUE,NA,NRS
14385,cg09255391,-0.0000182,0.00000617,-2.947974462,0.003441609,loss,ns,0.0000204,0.0000105,1.943258967,0.052889803,pos,ns,0.00257885,0.003072568,0.839314086,0.401939852,pos,ns,0.395838931,-0.000174674,0.000105665,-1.653086903,0.099325496,neg,ns,0.859434383,Gm18494,Gm18494_Intergenic_upstream,2,75425340,75425389,75425388,75425389,50,-,CAGTTCTGTCACTGCGCATTGGCACAAAAGCTTCAGCTGAAATTCTCTCG,Distal Intergenic,2,75302072,75303225,1154,2,Gm18494-201,-122164,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,6,100417269,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19721,cg26899966,0.000000665,0.00000101,0.655681763,0.512515216,gain,ns,-0.00000335,0.00000172,-1.942807066,0.052944649,neg,ns,-0.001467968,0.000504984,-2.906958375,0.003912735,neg,ns,2.407519556,0.0000389,0.0000174,2.242132029,0.025659722,pos,ns,0.976513916,Stat3,Stat3_Exon,11,100889539,100889588,100889587,100889588,50,+,ATCTAAAGTGCGGGGGGACATCGGCAGGTCAATGGTATTGCTGCAGGTCG,"Exon (Stat3-202/Stat3, exon 23 of 24)",11,100885098,100939404,54307,2,Stat3-202,49816,Stat3-202;Stat3-203;Stat3-205;Stat3-201;Stat3-207;Stat3-210;Stat3-213;Stat3-206;Stat3-214;Stat3-209;Stat3-208;Stat5a-201;Stat5a-202;Stat5a-203,Stat3;Stat3;Stat3;Stat3;Stat3;Stat3;Stat3;Stat3;Stat3;Stat3;Stat3;Stat5a;Stat5a;Stat5a,0;0;0;0;0;0;4214;4845;9719;5534;8940;30188;29883;29055,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,2,20848,ENSMUSG00000004040,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11792,cg08939198,-0.00000238,0.00000178,-1.333503538,0.183345614,loss,ns,0.00000589,0.00000303,1.942440549,0.052989167,pos,ns,0.002475768,0.000887748,2.788819641,0.00561714,pos,ns,2.250484761,-0.0000726,0.0000305,-2.378685152,0.017979929,neg,ns,0.951941653,Mbnl1,Mbnl1_Intron,3,60621991,60622040,60621991,60621992,50,-,CGCTGTGATTGCATGTCACTCGCTGGTGATGATGTCCTGTCACATGGCTT,"Intron (Mbnl1-211/Mbnl1, intron 6 of 8)",3,60473079,60628200,155122,1,Mbnl1-211,148912,Mbnl1-216;Mbnl1-211;Mbnl1-201;Mbnl1-202;Mbnl1-203;Mbnl1-218;Mbnl1-219;Mbnl1-214;Mbnl1-207;Mbnl1-205;Mbnl1-212;Mbnl1-215;Mbnl1-223;Mbnl1-213,Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,36,56758,ENSMUSG00000027763,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16939,cg10604851,-0.00015498,0.0000175,-8.87355763,5.77E-17,loss,yes,0.0000576,0.0000297,1.942174233,0.053021535,pos,ns,0.010095513,0.008692692,1.161379371,0.246381113,pos,ns,0.608392588,-0.000408615,0.000298941,-1.366876727,0.172654374,neg,ns,0.400139259,Gm48120,Gm48120_Promoter,10,87502408,87502457,87502456,87502457,50,+,GTTTACCGAAGTGACTGAGGTCAGTCGTGTGTCCCCATTGTGTGGCCACG,Promoter (5-6kb),10,87507862,87508485,624,1,Gm48120-201,-5405,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
9136,cg00458124,-0.000051,0.00000625,-8.152909881,8.89E-15,loss,yes,0.0000206,0.0000106,1.942106712,0.053029743,pos,ns,-0.005829579,0.003112889,-1.872722969,0.062047722,neg,ns,1.207274157,0.000122023,0.000107052,1.139843922,0.25523126,pos,ns,0.817604418,Ptpn5,Ptpn5_threeUTR,7,47077879,47077928,47077879,47077880,50,-,CGTGGGATAAATATTTAAAGTCAGCAATAAAAACACGTGGCTCCAAGATA,3' UTR,7,47077795,47133684,55890,2,Ptpn5-202,55756,LOC102637012-201;Ptpn5-202;Ptpn5-209;Ptpn5-201;Ptpn5-205;Ptpn5-207;Ptpn5-203,LOC102637012;Ptpn5;Ptpn5;Ptpn5;Ptpn5;Ptpn5;Ptpn5,-3192;0;0;0;13408;10640;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,4,19259,ENSMUSG00000030854,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
928,cg15330117,0.0000403,0.00000319,12.61911544,9.60E-30,gain,yes,-0.0000105,0.00000543,-1.942098944,0.053030688,neg,ns,0.00018628,0.001589557,0.117189871,0.906785481,pos,ns,0.042495442,0.000052,0.0000547,0.950858257,0.34241707,pos,ns,0.032765984,Gata3,Gata3_fiveUTR,2,9878571,9878620,9878571,9878572,50,+,CGCCAGGCAGCTCAGTGTTCGCAGACAGCTGTGGCGCGACGCAACTTAAG,Promoter (<=1kb),2,9857078,9878600,21523,2,Gata3-201,0,4930412O13Rik-201;4930412O13Rik-202;9230102O04Rik-202;9230102O04Rik-201;Gata3-201;Gata3-205;Gata3-206;Gata3-202;Gata3-204;Gata3-203,4930412O13Rik;4930412O13Rik;9230102O04Rik;9230102O04Rik;Gata3;Gata3;Gata3;Gata3;Gata3;Gata3,-2632;-4016;10920;5373;0;0;-3172;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,21,14462,ENSMUSG00000015619,conserved gene and region,2,9878568,9878714,147,*,147,12,0.639455782,0.804377565,0.081632653,1.97E-08,CpGisland,TRUE,U3,Pr-B
5866,cg09841637,0.00000212,0.000000916,2.316360037,0.02119048,gain,ns,0.00000302,0.00000156,1.942083756,0.053032535,pos,ns,0.001794119,0.000456144,3.933225838,0.000103465,pos,ns,3.985206269,-0.0000399,0.0000157,-2.542629835,0.011488258,neg,ns,0.973350095,Cnot4,Cnot4_Exon,6,35080004,35080053,35080004,35080005,50,+,CGATGCCAACAAAATCGGCAAATCTGGTAGCCACAGGTGCAAGGGAAAAA,"Exon (Cnot4-206/Cnot4, exon 2 of 11)",6,35022065,35133625,111561,2,Cnot4-206,53572,Cnot4-206;Cnot4-202;Cnot4-203;Cnot4-201;Cnot4-207;Cnot4-208,Cnot4;Cnot4;Cnot4;Cnot4;Cnot4;Cnot4,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,10,53621,ENSMUSG00000038784,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25487,cg16672799,-0.0000396,0.0000171,-2.31843872,0.021075802,loss,ns,0.0000564,0.000029,1.942077643,0.053033278,pos,ns,0.00266682,0.008501171,0.313700272,0.753959672,pos,ns,0.122651883,0.0000767,0.000292355,0.262480518,0.793125347,pos,ns,0.618133636,Rab9b,Rab9b_Exon,X,136861399,136861448,136861447,136861448,50,+,AGGCAGCAGTCTGCTCCCCTGTAGAAGGGTGTCCTAAGGCTCTTGAAACG,"Exon (Rab9b-201/Rab9b, exon 3 of 3)",20,136858147,136868755,10609,2,Rab9b-201,7307,Rab9b-201,Rab9b,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,319642,ENSMUSG00000043463,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8603,cg25509011,0.000000322,0.0000065,0.049486608,0.960563378,gain,ns,0.0000215,0.000011,1.94206222,0.053035153,pos,ns,0.005547617,0.003235992,1.71434809,0.087464302,pos,ns,1.058169167,-0.000154034,0.000111286,-1.384133019,0.167313357,neg,ns,0.872139654,Dscaml1,Dscaml1_Intron,9,45432945,45432994,45432993,45432994,50,-,AGAAAACAATATCCTCTTGCAATAATTTGTACGTCCATCTGTGAGGAGCG,"Intron (Dscaml1-208/Dscaml1, intron 3 of 5)",9,45426628,45571224,144597,1,Dscaml1-208,6317,Dscaml1-208;Dscaml1-209;Dscaml1-202;Dscaml1-206;Dscaml1-211;Dscaml1-201;Dscaml1-210,Dscaml1;Dscaml1;Dscaml1;Dscaml1;Dscaml1;Dscaml1;Dscaml1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,32,114873,ENSMUSG00000032087,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21924,cg21906315,0.00000992,0.00000326,3.0444664,0.002530747,gain,ns,-0.0000108,0.00000554,-1.942047521,0.05303694,neg,ns,-0.00199568,0.001621776,-1.230552117,0.219423323,neg,ns,0.658717213,-0.0000356,0.0000558,-0.638080626,0.523892254,neg,ns,0.859615943,Atxn1l,Atxn1l_Exon,8,109732056,109732105,109732104,109732105,50,-,CAAAATGCAGCATGACAAATCCAGGCCATTGGCTCTCCTGAATGTCCACG,"Exon (Atxn1l-201/Atxn1l, exon 4 of 4)",8,109726451,109737739,11289,2,Atxn1l-201,5634,Atxn1l-201;Atxn1l-202;Atxn1l-204;Atxn1l-203,Atxn1l;Atxn1l;Atxn1l;Atxn1l,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,4,52335,ENSMUSG00000069895,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5633,cg19494088,-0.0000147,0.00000866,-1.698654189,0.090387687,loss,ns,0.0000286,0.0000147,1.941892182,0.053055832,pos,ns,0.011404923,0.00431173,2.645091962,0.008583028,pos,ns,2.066359472,-0.000302988,0.00014828,-2.043346397,0.041863348,neg,ns,0.872281173,Mapkap1,Mapkap1_Intron,2,34434770,34434819,34434818,34434819,50,+,ATGTAATATTCACTTCAGTTCATTTGTGCATTAAAATTCCTTTAAGACCG,"Intron (Mapkap1-210/Mapkap1, intron 2 of 4)",2,34406771,34497716,90946,1,Mapkap1-210,27999,Gm13406-201;Mapkap1-210;Mapkap1-204;Mapkap1-208;Mapkap1-211;Mapkap1-202;Mapkap1-201;Mapkap1-209;Mapkap1-203;Mapkap1-207,Gm13406;Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1,1763;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,59,227743,ENSMUSG00000038696,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17452,cg17029259,-0.000014,0.00000923,-1.517345455,0.130198576,loss,ns,0.0000305,0.0000157,1.941662126,0.053083821,pos,ns,0.000432051,0.004595767,0.094010624,0.92516145,pos,ns,0.033782472,-0.000319543,0.000158048,-2.021809309,0.044054826,neg,ns,0.677174151,Nrxn3,Nrxn3_threeUTR,12,90331499,90331548,90331547,90331548,50,+,ATCCCTCTTCTTGTAGAAGACCCTTTAGCTACCCCTCCTATTGCTACTCG,3' UTR,12,88722986,90332878,1609893,1,Nrxn3-213,1608513,Nrxn3-213;Nrxn3-208;Nrxn3-205;Nrxn3-201;Nrxn3-210;Nrxn3-214;Nrxn3-203;Nrxn3-202,Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,14,39,18191,ENSMUSG00000066392,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17342,cg07230616,-0.000100512,0.000011,-9.170915888,6.72E-18,loss,yes,-0.0000362,0.0000186,-1.94164123,0.053086364,neg,ns,0.03436794,0.005454854,6.300432337,1.02E-09,pos,ns,8.992766368,-0.00136344,0.000187592,-7.268116577,2.98E-12,neg,yes,0.240208478,Ube2q1,Ube2q1_Exon,3,89781788,89781837,89781836,89781837,50,-,AAGAGCACAGCAGTCCTACAAGTCCTTGGTGCAGATCCACGAAAAAAACG,"Exon (Ube2q1-201/Ube2q1, exon 12 of 13)",3,89773616,89784000,10385,1,Ube2q1-201,8172,AC102392.1-201;Ube2q1-201;Ube2q1-203;Ube2q1-202,AC102392.1;Ube2q1;Ube2q1;Ube2q1,4473;0;7928;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,6,70093,ENSMUSG00000042572,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18717,cg15354625,0.0000323,0.0000278,1.162305581,0.246005388,gain,ns,0.0000916,0.0000472,1.941496773,0.053103946,pos,ns,0.015165482,0.013827641,1.096751205,0.273601395,pos,ns,0.562881693,0.000209821,0.000475531,0.441234672,0.659350696,pos,ns,0.886128392,Tenm4,Tenm4_Exon,7,96894977,96895026,96895025,96895026,50,+,ATGCTGAAGACCATCAACCTACAGAATGAGGGCTTCACCTGCACCATCCG,"Exon (Tenm4-201/Tenm4, exon 31 of 33)",7,96171246,96908569,737324,1,Tenm4-201,723731,Tenm4-201;Tenm4-203;Tenm4-202,Tenm4;Tenm4;Tenm4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,17,26,23966,ENSMUSG00000048078,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8415,cg05968078,0.0000581,0.00000952,6.106743878,3.04E-09,gain,yes,-0.0000314,0.0000162,-1.941341287,0.053122875,neg,ns,0.001921409,0.00473803,0.405529042,0.685368413,pos,ns,0.164075915,0.0000289,0.00016294,0.177500522,0.859231178,pos,ns,0.385902549,Zeb2,Zeb2_Intron,2,45103447,45103496,45103495,45103496,50,+,GCATTGATGTGAGCGAAAGTGAAATCATACCTAAGGCATTCAAAAGACCG,"Intron (Zeb2-212/Zeb2, intron 3 of 10)",2,44983632,45117395,133764,2,Zeb2-212,13899,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219;Zeb2-211;Zeb2-210;Zeb2-205;Zeb2-223;Zeb2-217;Zeb2-225;Zeb2-204,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;6580;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14375,cg25410683,-0.0000105,0.00000322,-3.252386185,0.00127055,loss,ns,-0.0000106,0.00000547,-1.941251028,0.053133866,neg,ns,0.002969979,0.001601402,1.854612013,0.064601082,pos,ns,1.189760207,-0.0000229,0.0000551,-0.41607873,0.677640294,neg,ns,0.948159409,Smad7,Smad7_Exon,18,75393944,75393993,75393992,75393993,50,+,TCTATGATCTACCTCAGGGGAATGGCTTTTGCCTCGGACAGCTCAATTCG,"Exon (Smad7-201/Smad7, exon 4 of 4)",18,75367529,75395935,28407,1,Smad7-201,26415,Smad7-201;Smad7-202;Smad7-205;Smad7-204;Smad7-203,Smad7;Smad7;Smad7;Smad7;Smad7,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,19,17131,ENSMUSG00000025880,conserved gene and region,18,75393978,75394146,169,*,169,11,0.573964497,0.79106383,0.065088757,0.000000917,CpGisland,TRUE,U10,Tr-S
9449,cg26426930,0.0000231,0.00000731,3.156083291,0.001756143,gain,ns,0.0000241,0.0000124,1.941157182,0.053145296,pos,ns,0.009436585,0.003636479,2.594978071,0.009909472,pos,ns,2.003949507,-0.000136306,0.000125058,-1.089940601,0.276585816,neg,ns,0.134018849,Csmd3,Csmd3_Promoter,15,48791479,48791528,48791527,48791528,50,-,TCGTTTGAGCATACTGCAAGAATATTTATTGAGCACAAGCTCAATCACCG,Promoter (<=1kb),15,47580637,48791933,1211297,2,Csmd3-204,405,Csmd3-204;Csmd3-201;Csmd3-209;Csmd3-205;Csmd3-203,Csmd3;Csmd3;Csmd3;Csmd3;Csmd3,0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,4,16,239420,ENSMUSG00000022311,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
16369,cg10031892,-0.0000228,0.0000278,-0.821267845,0.412124851,loss,ns,-0.0000917,0.0000472,-1.9410623,0.053156855,neg,ns,-0.030925418,0.013842439,-2.234101899,0.026189146,neg,ns,1.581878667,0.00049932,0.00047604,1.048902903,0.295039858,pos,ns,0.427578176,Mrm1,Mrm1_Intron,11,84775590,84775639,84775638,84775639,50,+,ATATGACAAAATGCTTGCAAATCTCACTCATTGCTGAACAGAAACAGGCG,"Intron (Gm11431-201/Gm11431-201, intron 2 of 2)",11,84814743,84815390,648,2,Mrm1-203,39751,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,42,217038,ENSMUSG00000018405,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13737,cg03115692,-0.000028,0.0000072,-3.882282614,0.000126478,loss,ns,-0.0000238,0.0000122,-1.94081501,0.053186989,neg,ns,-0.009537663,0.003585984,-2.659705827,0.008227476,neg,ns,2.084733365,-0.000104022,0.000123322,-0.843500386,0.399599037,neg,ns,0.88111361,Gm4052,Gm4052_Intergenic_upstream,13,72302619,72302668,72302667,72302668,50,-,CCTGACATTTTCCCAACTAATTACAGGACAAATAATTAAGCATGTTCTCG,Distal Intergenic,13,72350221,72350671,451,1,Gm4052-201,-47602,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,16,16,100042828,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19946,cg08493381,0.00000187,0.00000313,0.596843826,0.551047285,gain,ns,-0.0000103,0.00000531,-1.940765302,0.053193048,neg,ns,-0.000489421,0.001556651,-0.314406621,0.75342372,neg,ns,0.122960711,0.0000105,0.0000535,0.196125085,0.844640765,pos,ns,0.884437841,Clpb,Clpb_Intron,7,101714416,101714465,101714416,101714417,50,-,CGAGTTTTTAACATCTTGAAGAAAAGGCAGAGGAGAGGCAAGCAGGTGTA,"Intron (Clpb-205/Clpb, intron 4 of 5)",7,101663633,101722922,59290,1,Clpb-205,50783,Clpb-205;Clpb-201;Clpb-202;Clpb-211;Clpb-208;Clpb-207;Clpb-210,Clpb;Clpb;Clpb;Clpb;Clpb;Clpb;Clpb,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,21,21,20480,ENSMUSG00000001829,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25910,cg07487340,0.0000809,0.00000981,8.244145803,4.77E-15,gain,yes,0.0000323,0.0000167,1.940737176,0.053196476,pos,ns,0.024035262,0.004882411,4.922826912,0.00000139,pos,ns,5.857388938,-0.000154423,0.000167906,-0.919703076,0.358443031,neg,ns,0.628658775,Mid2,Mid2_Exon,X,140678253,140678302,140678253,140678254,50,+,CGGGGCCTGGATGGCCTCAAGAGGAATGTGACTCTGCAGAACATTATTGA,"Exon (Mid2-204/Mid2, exon 2 of 2)",20,140664599,140678708,14110,1,Mid2-204,13654,Mid2-204;Mid2-202;Mid2-201;Mid2-203,Mid2;Mid2;Mid2;Mid2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,11,23947,ENSMUSG00000000266,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4616,cg01955745,-0.00010477,0.0000131,-8.017781192,2.22E-14,loss,yes,0.0000431,0.0000222,1.940693067,0.053201853,pos,ns,0.02221569,0.006503665,3.415872282,0.000720522,pos,ns,3.142352897,-0.000759581,0.000223661,-3.396132154,0.000772513,neg,ns,0.323228651,Ntm,Ntm_Promoter,9,29963178,29963227,29963226,29963227,50,-,AGCTGCAATCATTGGTTCTAATCCAAGGATTGACAGAGCTACAACACACG,Promoter (<=1kb),9,29941548,29963141,21594,2,Ntm-209,-86,Ntm-201;Ntm-204;Ntm-210;Ntm-207;Ntm-209,Ntm;Ntm;Ntm;Ntm;Ntm,0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,5,32,235106,ENSMUSG00000059974,conserved gene but different region,9,29963224,29963231,8,*,8,4,1,2,0.5,0.000000563,CpGisland,TRUE,U15,NS
13328,cg06807725,-0.0000231,0.00000382,-6.040785168,4.39E-09,loss,yes,0.0000126,0.0000065,1.940690601,0.053202154,pos,ns,-0.004945722,0.001903401,-2.598360088,0.009814491,neg,ns,2.008132211,0.000157165,0.0000655,2.401008001,0.016938822,pos,ns,0.896039806,Myo3b,Myo3b_Exon,2,70105690,70105739,70105690,70105691,50,-,CGTGATGTGAAGGGGAATAACATTCTTCTGACAACAGAAGGAGGAGTTAA,"Exon (Myo3b-201/Myo3b, exon 6 of 35)",2,70039126,70429195,390070,1,Myo3b-201,66564,Myo3b-201;Myo3b-203;Myo3b-202,Myo3b;Myo3b;Myo3b,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,6,329421,ENSMUSG00000042064,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24749,cg01243312,-0.00000476,0.00000287,-1.658709268,0.098185776,loss,ns,-0.00000945,0.00000487,-1.940540544,0.053220451,neg,ns,-0.004157529,0.001426887,-2.913706583,0.003831384,neg,ns,2.416644334,0.000153179,0.0000491,3.121616269,0.001968104,pos,ns,0.952810682,R3hdm1,R3hdm1_Exon,1,128202369,128202418,128202369,128202370,50,-,CGGGGCCGTAGCACTGTCTGAGAGGTTTACATTTCTCACAGTGAACCGGT,"Exon (Mir128-1-201/Mir128-1-201, exon 1 of 1)",1,128103324,128237736,134413,1,R3hdm1-201,99045,R3hdm1-201;R3hdm1-213;R3hdm1-214,R3hdm1;R3hdm1;R3hdm1,0;0;-4574,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,7,226412,ENSMUSG00000056211,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12084,cg18085060,-0.00000213,0.00000252,-0.846695762,0.397817865,loss,ns,0.0000083,0.00000428,1.94029145,0.053250835,pos,ns,0.001397582,0.001253762,1.114711163,0.26583766,pos,ns,0.575383495,-0.0000406,0.0000431,-0.942490245,0.346675605,neg,ns,0.946768176,Ccar1,Ccar1_Exon,10,62764514,62764563,62764514,62764515,50,+,CGAATCTCTGCAAAACGGTACCTGTTGCAAGGGAAGAAGCATGTTGGAAA,"Exon (Ccar1-201/Ccar1, exon 14 of 25)",10,62743928,62792231,48304,2,Ccar1-201,27668,Ccar1-201;Ccar1-211;Ccar1-207;Ccar1-206;Ccar1-212;Ccar1-205;Ccar1-210;Gm48145-201,Ccar1;Ccar1;Ccar1;Ccar1;Ccar1;Ccar1;Ccar1;Gm48145,0;0;-1047;0;-4165;0;0;2763,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,10,67500,ENSMUSG00000020074,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9621,cg23977137,-0.0000415,0.00000833,-4.986951473,0.00000102,loss,yes,0.0000275,0.0000141,1.94021331,0.05326037,pos,ns,-0.002901568,0.004145338,-0.699959308,0.484477652,neg,ns,0.314726252,-0.000210866,0.000142558,-1.479162746,0.140112245,neg,ns,0.824237106,Ncam1,Ncam1_Exon,9,49550516,49550565,49550564,49550565,50,-,GGCTAGTGGTCAGGTAAGCTATACCTCTTGCTTCTCTGGTCGAGTCCACG,"Exon (Ncam1-205/Ncam1, exon 7 of 20)",9,49502136,49798925,296790,2,Ncam1-204,248360,Ncam1-204;Ncam1-205;Ncam1-202;Ncam1-201;Ncam1-203,Ncam1;Ncam1;Ncam1;Ncam1;Ncam1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,16,17967,ENSMUSG00000039542,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8357,cg00044472,0.0000638,0.0000111,5.738886745,2.27E-08,gain,yes,-0.0000366,0.0000189,-1.940148374,0.053268294,neg,ns,0.004658603,0.00553306,0.841957814,0.400460623,pos,ns,0.397440182,0.0000258,0.000190281,0.135796593,0.892070222,pos,ns,0.324327171,Zeb2,Zeb2_Intron,2,45044902,45044951,45044950,45044951,50,+,TCTGTTTGGATTTCTGTAAATTGGAGTCCGACAAGCCTGCAGTTCCGTCG,"Intron (Zeb2-212/Zeb2, intron 3 of 10)",2,44983632,45117395,133764,2,Zeb2-212,72444,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-218;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3059,cg16515648,-0.000000973,0.00000327,-0.297608084,0.766201646,loss,ns,0.0000108,0.00000556,1.940085388,0.053275982,pos,ns,0.004537279,0.001627699,2.78754129,0.005638796,pos,ns,2.248813584,-0.0000995,0.000056,-1.77670448,0.076597481,neg,ns,0.911102985,Lrmda,Lrmda_Intron,14,22492175,22492224,22492175,22492176,50,-,CGGTATGACCTCGTGTTGTATTTTTTCTGAATGACAATGAAAGTAATTGA,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,472463,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206;Lrmda-202,Lrmda;Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6137,cg08318491,-0.000009,0.000005,-1.798377274,0.073089987,loss,ns,0.0000165,0.0000085,1.939905505,0.053297942,pos,ns,0.001603439,0.002490163,0.643909074,0.520110498,pos,ns,0.283904381,-0.0000985,0.0000856,-1.150646431,0.250764508,neg,ns,0.917149081,Tenm2,Tenm2_Exon,11,36139605,36139654,36139653,36139654,50,-,TCTCGGCATTCACATTTGCCATCTTTACAGGTCCCGTGCTCAATGCAGCG,"Exon (Tenm2-202/Tenm2, exon 14 of 31)",11,36006656,37235882,1229227,2,Tenm2-202,1096228,Tenm2-202;Tenm2-208;Tenm2-201;Tenm2-204;Tenm2-205,Tenm2;Tenm2;Tenm2;Tenm2;Tenm2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,21,84,23964,ENSMUSG00000049336,conserved gene and region,11,36139608,36139733,126,*,126,10,0.642857143,0.782608696,0.079365079,0.000000572,CpGisland,TRUE,U15,NS
19736,cg24020035,-0.00000838,0.0000072,-1.164420389,0.245149012,loss,ns,-0.0000237,0.0000122,-1.939542708,0.053342255,neg,ns,-0.005619146,0.00358346,-1.568078241,0.117883021,neg,ns,0.928548745,-0.00000544,0.000123235,-0.044176602,0.964792074,neg,ns,0.915730206,Cachd1,Cachd1_Exon,4,100974814,100974863,100974814,100974815,50,+,CGTCACAGATGAATGGATGACACAAATGGAAATGAGTAGCCTGAACACTT,"Exon (Cachd1-201/Cachd1, exon 15 of 27)",4,100776675,101004544,227870,1,Cachd1-201,198139,Cachd1-201;Cachd1-202,Cachd1;Cachd1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,5,320508,ENSMUSG00000028532,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1941,cg05681757,0.0000411,0.0000108,3.811477183,0.000166618,gain,ns,-0.0000355,0.0000183,-1.939404611,0.05335913,neg,ns,0.016060869,0.005364872,2.993709707,0.00297786,pos,ns,2.526095673,-0.000535247,0.000184497,-2.901105841,0.003984562,neg,ns,0.153030952,Fgd4,Fgd4_Intron,16,16560228,16560277,16560276,16560277,50,+,TGGGGAGTGAACAGATGGTGGATTCCATGGTAACCAGCCCTCCTAAGGCG,"Intron (Fgd4-211/Fgd4, intron 1 of 16)",16,16422563,16599978,177416,2,Fgd4-211,39701,Fgd4-206;Fgd4-211;Fgd4-212;Fgd4-207;Fgd4-208;Fgd4-203;Fgd4-202;Fgd4-209;Fgd4-205,Fgd4;Fgd4;Fgd4;Fgd4;Fgd4;Fgd4;Fgd4;Fgd4;Fgd4,-9;0;-182;-17;-17;0;-238;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,224014,ENSMUSG00000022788,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
12381,cg20696319,0.0000534,0.0000156,3.425051576,0.000697475,gain,ns,-0.0000514,0.0000265,-1.939369106,0.05336347,neg,ns,0.03296944,0.007759707,4.248799518,0.0000285,pos,ns,4.545783979,-0.001131196,0.000266856,-4.238980542,0.0000297,neg,ns,0.42080701,Fign,Fign_Intron,2,64079927,64079976,64079927,64079928,50,+,CGTCTCTCAGTATAGCGACAGACAGCTGCTTCCACTTTCTAATGTGCCCT,"Intron (Fign-203/Fign, intron 2 of 2)",2,63971507,64098012,126506,2,Fign-203,18036,Fign-203;Fign-201;Fign-202;Fign-204,Fign;Fign;Fign;Fign,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,84,60344,ENSMUSG00000075324,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21028,cg06766842,-0.00000267,0.00000186,-1.439242827,0.151090686,loss,ns,0.00000612,0.00000316,1.939219554,0.053381751,pos,ns,0.002767606,0.000924326,2.994188871,0.00297332,pos,ns,2.526758281,-0.000095,0.0000318,-2.989628357,0.003016788,neg,ns,0.958092172,Vrk1,Vrk1_Intergenic_downstream,12,106129319,106129368,106129319,106129320,50,-,CGGAAATTCTCCAGCGCATCTCGATAATTAAGTCTTTGTTTATCAAAAAA,Distal Intergenic,12,106030717,106075409,44693,1,Vrk1-204,98651,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,29,37,22367,ENSMUSG00000021115,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1195,cg02999327,0.0000399,0.00000332,11.99483351,1.73E-27,gain,yes,-0.0000109,0.00000565,-1.938963453,0.05341307,neg,ns,0.00303158,0.00165409,1.832778302,0.067794515,pos,ns,1.16880544,-0.000149419,0.0000569,-2.62672599,0.009049411,neg,ns,0.090041528,Grb10,Grb10_Promoter,11,12036432,12036481,12036432,12036433,50,-,CGTTTGGAGAGGCAATCAGCAAAGGCGAAGAGTTGCATCAGAAATTTCCT,Promoter (<=1kb),11,11930508,12037401,106894,2,Grb10-201,920,Grb10-201;Grb10-206,Grb10;Grb10,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,1,2,14783,ENSMUSG00000020176,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11054,cg09639722,0.0000473,0.00000622,7.605143538,3.43E-13,gain,yes,-0.0000205,0.0000106,-1.938897133,0.053421183,neg,ns,0.003899456,0.003096948,1.25912896,0.208931032,pos,ns,0.679997051,0.0000375,0.000106504,0.352551364,0.724664377,pos,ns,0.472457009,Gm18027,Gm18027_Intergenic_upstream,12,56459551,56459600,56459599,56459600,50,-,TCATTTCATTGCCCTCAAAGCACAGCAGGAATTATTAGCTTACCCTGGCG,Distal Intergenic,12,56409939,56410557,619,2,Gm18027-201,-49043,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,8,100416309,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9405,cg24941333,-0.0000114,0.0000128,-0.892860144,0.372624647,loss,ns,-0.000042,0.0000217,-1.938805067,0.053432447,neg,ns,-0.013275309,0.006353246,-2.089531571,0.037474823,neg,ns,1.42626041,0.000219785,0.000218488,1.005936495,0.315230654,pos,ns,0.798665442,Zbtb16,Zbtb16_Intron,9,48661210,48661259,48661258,48661259,50,+,GCCCACTGTATTTCACTTGTCCCTCTGCAGATGTGCGGGGCTGCCAACCG,"Intron (Zbtb16-201/Zbtb16, intron 5 of 6)",9,48654297,48835945,181649,2,Zbtb16-201,174686,Zbtb16-201;Zbtb16-202,Zbtb16;Zbtb16,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,37,235320,ENSMUSG00000066687,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9917,cg23325054,-0.000043,0.0000116,-3.700139102,0.000254891,loss,ns,0.0000383,0.0000197,1.938764959,0.053437355,pos,ns,0.005423808,0.005781524,0.938127793,0.348909063,pos,ns,0.457287749,-0.000454033,0.000198826,-2.283566323,0.023073289,neg,ns,0.68683483,Gm46574,Gm46574_Intergenic_upstream,17,51578436,51578485,51578436,51578437,50,-,CGATTTTCTATTATTTGACTGGGGTGGGTGGAATAATTTTAATTGCTAAG,Distal Intergenic,17,51484292,51484721,430,2,Gm46574-201,-93764,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,19,108168316,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23110,cg16286993,0.000032,0.00000673,4.751712874,0.00000309,gain,ns,-0.0000222,0.0000114,-1.938714733,0.053443501,neg,ns,0.003627051,0.003351605,1.082183281,0.280012163,pos,ns,0.552823104,-0.000178932,0.000115261,-1.552405026,0.121585624,neg,ns,0.575283197,Rnf220,Rnf220_Intron,4,117304371,117304420,117304371,117304372,50,+,CGTTTCGGCTTTATCGATCCGACGGGAATTTCACTTGCTGTGCAGATCCC,"Intron (Rnf220-201/Rnf220, intron 3 of 14)",4,117271463,117497052,225590,2,Rnf220-201,192632,Rnf220-201;Rnf220-202;Rnf220-208;Rnf220-207,Rnf220;Rnf220;Rnf220;Rnf220,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,4,117304190,117304735,546,*,546,58,0.690476191,0.936645963,0.106227106,6.95E-46,CpGisland,TRUE,NA,NRS
20598,cg01000173,0.0000586,0.0000105,5.590640924,4.97E-08,gain,yes,0.0000345,0.0000178,1.938619693,0.053455133,pos,ns,0.0183781,0.005213346,3.525202596,0.000486983,pos,ns,3.312486193,-0.000352529,0.000179287,-1.966290879,0.050157006,neg,ns,0.404729233,Wnt3,Wnt3_Exon,11,103808204,103808253,103808204,103808205,50,+,CGGCTCCATCCCAGGCCTGGTCCCCAAGCAACTGCGCTTCTGCCGCAATT,"Exon (Wnt3-201/Wnt3, exon 2 of 5)",11,103774150,103817957,43808,1,Wnt3-201,34054,Wnt3-201,Wnt3,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,9,22415,ENSMUSG00000000125,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
17632,cg23507610,-0.00000263,0.00000215,-1.223636487,0.222018635,loss,ns,0.00000709,0.00000366,1.938058058,0.053523915,pos,ns,0.003275813,0.001071304,3.057781817,0.002424136,pos,ns,2.615442984,-0.000115224,0.0000368,-3.12752259,0.001930183,neg,ns,0.956136632,Rpgrip1l,Rpgrip1l_Intron,8,91305824,91305873,91305872,91305873,50,-,AAGGTGGCTTTGATGAGAGACACAAGTTCAAGACTTTACAAAATTGGTCG,"Intron (Rpgrip1l-201/Rpgrip1l, intron 3 of 25)",8,91217030,91313262,96233,2,Rpgrip1l-201,7389,Rpgrip1l-201;Rpgrip1l-204;Rpgrip1l-205;Rpgrip1l-202,Rpgrip1l;Rpgrip1l;Rpgrip1l;Rpgrip1l,0;0;4544;5207,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,4,244585,ENSMUSG00000033282,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16345,cg00211337,0.000117248,0.0000206,5.692355234,2.91E-08,gain,yes,-0.0000678,0.000035,-1.937856602,0.053548605,neg,ns,0.020926708,0.010251522,2.04132697,0.042064815,pos,ns,1.376081018,-0.000593187,0.000352549,-1.682566217,0.093465969,neg,ns,0.370021801,Trip12,Trip12_Exon,1,84759078,84759127,84759078,84759079,50,+,CGTCCCAGAGTGGACAAGCTTATCTCATCCTCACCGACCTGATGGGCTGC,"Exon (Trip12-201/Trip12, exon 17 of 41)",1,84721189,84839304,118116,2,Trip12-201,80177,Trip12-201;Trip12-206;Trip12-207;Trip12-213;Trip12-205;Trip12-208;Trip12-202,Trip12;Trip12;Trip12;Trip12;Trip12;Trip12;Trip12,0;0;0;-4674;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,11,14897,ENSMUSG00000026219,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1527,cg22332421,-0.000000956,0.00000849,-0.112609759,0.910412833,loss,ns,0.0000279,0.0000144,1.937702614,0.053567484,pos,ns,0.002144103,0.004225586,0.507409668,0.612228187,pos,ns,0.21308668,0.0000638,0.000145318,0.438777028,0.661128752,pos,ns,0.815376524,Gm11819,Gm11819_Intergenic_downstream,4,13451810,13451859,13451858,13451859,50,-,CAAAGTCACGTCGCATTGATTAGAATTCACTGCAGGTTATTCAAATAACG,Distal Intergenic,4,13444770,13445141,372,1,Gm11819-201,7089,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,22,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23222,cg19106526,-0.0000107,0.00000591,-1.802775561,0.072394541,loss,ns,-0.0000195,0.00001,-1.937564485,0.053584423,neg,ns,-0.011354785,0.002942476,-3.858922288,0.000138582,neg,ns,3.858294048,0.000169129,0.000101191,1.671373492,0.09565703,pos,ns,0.827363327,Eri3,Eri3_Intergenic_upstream,4,117539875,117539924,117539875,117539876,50,-,CGTCCTGGTCATAACCCTGCTTAATAGAGACATCAAGATGAATGATTGAA,Distal Intergenic,4,117550365,117674297,123933,1,Eri3-201,-10490,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,97,140546,ENSMUSG00000033423,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24026,cg03952681,-0.00000419,0.0000039,-1.07582225,0.28284332,loss,ns,0.0000128,0.00000662,1.937527975,0.053588901,pos,ns,0.006328873,0.001939284,3.263510541,0.001223311,pos,ns,2.912463193,-0.000180206,0.0000667,-2.702066898,0.007270458,neg,ns,0.931015436,Ctdspl2,Ctdspl2_threeUTR,2,122011804,122011853,122011852,122011853,50,-,TTGGTTCTCTAATGCAGCTACCACAAGAGGTTGATATTTTTATAGTGGCG,3' UTR,2,121956001,122013642,57642,1,Ctdspl2-201,55803,Ctdspl2-201;Ctdspl2-204;Ctdspl2-209;Ctdspl2-203;Ctdspl2-202,Ctdspl2;Ctdspl2;Ctdspl2;Ctdspl2;Ctdspl2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,8,329506,ENSMUSG00000033411,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24839,cg18039769,-0.00000611,0.00000281,-2.175349055,0.030359317,loss,ns,-0.00000924,0.00000477,-1.937526353,0.0535891,neg,ns,-0.003474447,0.001396863,-2.487321316,0.013396475,neg,ns,1.873009459,-0.00000255,0.000048,-0.053038977,0.957735015,neg,ns,0.92591893,Dnajc14,Dnajc14_Exon,10,128814570,128814619,128814570,128814571,50,-,CGAATGGCAGAGAATGAGCTGAGCCGGTCAGTAAATGAGTTTCTGTCCAA,"Exon (Dnajc14-202/Dnajc14, exon 4 of 7)",10,128805554,128819259,13706,1,Dnajc14-202,9016,Dnajc14-202;Dnajc14-206;Dnajc14-207;Dnajc14-201;Dnajc14-205;Ormdl2-201;Ormdl2-203;Ormdl2-202;Ormdl2-204;Sarnp-202,Dnajc14;Dnajc14;Dnajc14;Dnajc14;Dnajc14;Ormdl2;Ormdl2;Ormdl2;Ormdl2;Sarnp,0;0;0;0;7192;6975;6987;6972;7026;-2714,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,74330,ENSMUSG00000025354,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20188,cg09171093,-0.00000205,0.00000169,-1.211311964,0.226698437,loss,ns,0.00000557,0.00000288,1.937426461,0.053601354,pos,ns,-0.000599248,0.000842588,-0.711199231,0.477495565,neg,ns,0.321030658,0.0000414,0.000029,1.429866915,0.153762261,pos,ns,0.95904315,Sgip1,Sgip1_Exon,4,102927532,102927581,102927532,102927533,50,-,CGGCCTCCATCCCGGCCAAAGCTACCTCCAGGAAAACCTGGAGTTGGAGA,"Exon (Sgip1-201/Sgip1, exon 15 of 24)",4,102760135,102971983,211849,1,Sgip1-201,167397,Sgip1-201;Sgip1-202;Sgip1-203;Sgip1-205;Sgip1-213;Sgip1-206;Sgip1-211,Sgip1;Sgip1;Sgip1;Sgip1;Sgip1;Sgip1;Sgip1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,6,73094,ENSMUSG00000028524,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10134,cg06236491,0.0000115,0.00000467,2.466837883,0.014171633,gain,ns,0.0000154,0.00000793,1.937034533,0.053649455,pos,ns,0.005975587,0.002324181,2.571050905,0.010605274,pos,ns,1.974478091,-0.0000128,0.0000799,-0.160704317,0.872430961,neg,ns,0.547482616,Gm28308,Gm28308_Intron,6,52201023,52201072,52201071,52201072,50,+,ATAAAACTTACTTTAATGGCCCCACGTGACGTTTTATAGCCAGTGAGCCG,"Intron (Hoxaas3-202/Hoxaas3-202, intron 1 of 2)",6,52163359,52213339,49981,2,Gm28308-201,12267,Gm28308-201;Hoxa3-201;Hoxa3-203;Hoxa5-201,Gm28308;Hoxa3;Hoxa3;Hoxa5,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,46,103,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
13028,cg00620527,-0.0000461,0.00000921,-4.999062978,0.000000965,loss,yes,0.0000303,0.0000157,1.937034529,0.053649456,pos,ns,0.0000803,0.004585089,0.017520776,0.98603243,pos,ns,0.006108801,0.000173353,0.000157681,1.099389192,0.272451388,pos,ns,0.870442615,Klhdc1,Klhdc1_Exon,12,69258001,69258050,69258049,69258050,50,+,CTGTTCTGATTTCTACTTGCAGGGTGGAGTTCCACCACAGCCACGAGCCG,"Exon (Klhdc1-201/Klhdc1, exon 7 of 13)",12,69241832,69284632,42801,1,Klhdc1-201,16169,Klhdc1-201;Klhdc1-204,Klhdc1;Klhdc1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,271005,ENSMUSG00000051890,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
5667,cg27002632,0.0000185,0.00000496,3.736786794,0.000221855,gain,ns,-0.0000163,0.00000842,-1.936902507,0.053665667,neg,ns,-0.002917782,0.002467651,-1.182412924,0.237948015,neg,ns,0.623517915,-0.000262927,0.0000849,-3.098282023,0.002124739,neg,ns,0.821600944,Mapkap1,Mapkap1_Intron,2,34531227,34531276,34531275,34531276,50,-,AGATGGAGAGCCAAGTTACCTCAGAATGATCACTATCGTTAACATTCACG,"Intron (Mapkap1-204/Mapkap1, intron 5 of 10)",2,34406862,34623475,216614,1,Mapkap1-204,124365,Mapkap1-204;Mapkap1-202;Mapkap1-201;Mapkap1-209;Mapkap1-203;Mapkap1-207,Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,59,227743,ENSMUSG00000038696,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2937,cg16920926,-0.00000251,0.00000176,-1.42423724,0.155383633,loss,ns,0.00000579,0.00000299,1.936813113,0.053676646,pos,ns,0.001857301,0.00087591,2.120424279,0.0347642,pos,ns,1.458867755,-0.0000658,0.0000301,-2.183830365,0.02972399,neg,ns,0.96097525,Ehbp1,Ehbp1_Intron,11,22078869,22078918,22078917,22078918,50,+,CATCACTAAGTCGTGCGTATGTGTTTCAGTTTGTAATGTGGTCTGAGCCG,"Intron (Ehbp1-201/Ehbp1, intron 14 of 23)",11,22005828,22285838,280011,2,Ehbp1-201,206920,Ehbp1-201;Ehbp1-202;Ehbp1-207,Ehbp1;Ehbp1;Ehbp1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,34,45,216565,ENSMUSG00000042302,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4171,cg24707133,-0.0000152,0.00000683,-2.225597202,0.026760177,loss,ns,-0.0000225,0.0000116,-1.936808075,0.053677264,neg,ns,0.021283367,0.003396876,6.265571611,1.24E-09,pos,ns,8.906358821,-0.000696215,0.000116818,-5.959816294,6.86E-09,neg,yes,0.761569546,Egln2,Egln2_Exon,7,27159775,27159824,27159823,27159824,50,-,TACAGGTCATACCTGGTGGCATAGGCTGGCTTCACCTCGTGGGGGTTCCG,"Exon (Egln2-201/Egln2, exon 4 of 6)",7,27158658,27166802,8145,2,Egln2-201,6978,Cyp2t4-202;Cyp2t4-201;Egln2-201;Egln2-204;Egln2-202,Cyp2t4;Cyp2t4;Egln2;Egln2;Egln2,6061;4693;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,112406,ENSMUSG00000058709,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2581,cg04441307,-0.00000146,0.00000563,-0.258744544,0.796004064,loss,ns,0.0000185,0.00000956,1.936574791,0.053705925,pos,ns,-0.00060389,0.00280096,-0.215601166,0.82944043,neg,ns,0.081214799,-0.0000612,0.0000963,-0.635188742,0.525773883,neg,ns,0.706657608,Rbm10,Rbm10_Exon,X,20641208,20641257,20641208,20641209,50,-,CGAGTTTAGTCACTTGCAGGACGCTACACGATGGATGGAAGCCAATCAGG,"Exon (Rbm10-205/Rbm10, exon 6 of 24)",20,20617503,20650888,33386,1,Rbm10-205,23705,Rbm10-205;Rbm10-204;Rbm10-203;Rbm10-206;Rbm10-201;Rbm10-202;Rbm10-207,Rbm10;Rbm10;Rbm10;Rbm10;Rbm10;Rbm10;Rbm10,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,14,236732,ENSMUSG00000031060,conserved gene and region,X,20641104,20641268,165,*,165,11,0.56969697,0.821638751,0.066666667,0.000000724,CpGisland,TRUE,U10,Tr-S
2054,cg11468000,-0.0000149,0.00000537,-2.779987458,0.005768318,loss,ns,0.0000177,0.00000912,1.936468693,0.053718964,pos,ns,0.001936326,0.002672324,0.724585256,0.469253024,pos,ns,0.32859292,0.000039,0.0000919,0.424188995,0.671722198,pos,ns,0.050142652,Cited2,Cited2_Exon,10,17724352,17724401,17724352,17724353,50,-,CGGATTTGCACCCTGCTGCAGGCCACCAGATGAACGGGACAAACCAGCAC,"Exon (Cited2-201/Cited2, exon 2 of 2)",10,17723218,17725674,2457,1,Cited2-201,1134,Cited2-201;Cited2-203;Cited2-202,Cited2;Cited2;Cited2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,11,17684,ENSMUSG00000039910,conserved gene and region,10,17724352,17724615,264,*,264,28,0.700757576,0.865168539,0.106060606,2.20E-22,CpGisland,TRUE,U1,Pr-A
25740,cg21676274,0.0000242,0.0000175,1.38151117,0.168116715,gain,ns,0.0000577,0.0000298,1.936416896,0.05372533,pos,ns,0.005759548,0.008723758,0.660214041,0.509606732,pos,ns,0.292764844,0.000246664,0.000300009,0.822188891,0.411601332,pos,ns,0.849190428,Nrk,Nrk_threeUTR,X,138997540,138997589,138997540,138997541,50,+,CGGTTTAAGAGACCAGATGAGCTCCTTCATTTGCTGAAGCTCAAGGCAAG,3' UTR,20,138914430,139009092,94663,1,Nrk-201,83110,Nrk-201;Nrk-203;Nrk-202,Nrk;Nrk;Nrk,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,1,27206,ENSMUSG00000052854,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19781,cg26603448,-0.00000271,0.00000164,-1.653284874,0.099285185,loss,ns,0.00000539,0.00000279,1.936401168,0.053727264,pos,ns,0.001728053,0.000815988,2.11774247,0.034992648,pos,ns,1.456023186,-0.0000238,0.0000281,-0.847696696,0.397260913,neg,ns,0.044602468,Msl2,Msl2_fiveUTR,9,101075266,101075315,101075314,101075315,50,-,CGAAGTGTCTGCAATGAACCCCGTGAATGCTACTGCTCTCTACATTTCCG,5' UTR,9,101074101,101101785,27685,1,Msl2-202,1165,Msl2-202;Msl2-201,Msl2;Msl2,0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,19,77853,ENSMUSG00000066415,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
26931,cg07788537,-0.0000606,0.0000101,-5.97456424,6.33E-09,loss,yes,0.0000333,0.0000172,1.93630205,0.053739449,pos,ns,-0.009221823,0.005044129,-1.82822905,0.068476062,neg,ns,1.164461224,0.000196643,0.000173467,1.133602787,0.257837107,pos,ns,0.836595901,Ttc34,Ttc34_Intergenic_upstream,4,154781340,154781389,154781340,154781341,50,+,CGGGTGGGGGGAGGAGGGCAGAACCTTCAGAACTAATGTCAATTTTCTGC,Distal Intergenic,4,154837459,154867125,29667,1,Ttc34-203,-56070,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,6,242800,ENSMUSG00000046637,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7328,cg21896024,-0.00000206,0.0000051,-0.402745775,0.687412849,loss,ns,-0.0000168,0.00000867,-1.936051789,0.053770225,neg,ns,-0.004103097,0.002539931,-1.615436176,0.107233519,neg,ns,0.969669442,-0.0000311,0.0000873,-0.356371138,0.721805063,neg,ns,0.882910946,Rbm27,Rbm27_Exon,18,42314006,42314055,42314054,42314055,50,-,GCATCTGAGCGACTTCAGTTGGGGACACCGCCTCCTCTGTTGGCAGCTCG,"Exon (Rbm27-201/Rbm27, exon 9 of 20)",18,42275353,42341542,66190,1,Rbm27-201,38653,Rbm27-201;Rbm27-202;Rbm27-203;Rbm27-205,Rbm27;Rbm27;Rbm27;Rbm27,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,10,225432,ENSMUSG00000024491,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4829,cg24700341,-0.0000062,0.00000238,-2.608595104,0.009531998,loss,ns,0.00000781,0.00000404,1.936041547,0.053771485,pos,ns,0.002550629,0.001182259,2.157418807,0.03174114,pos,ns,1.498377485,-0.000095,0.0000407,-2.3362003,0.020117876,neg,ns,0.938068121,Exoc2,Exoc2_Exon,13,30877357,30877406,30877357,30877358,50,+,CGGGTAAGCTTCACCAGGGAGTGCATTACTTCCTGAATCATTTTCTAGAA,"Exon (Exoc2-202/Exoc2, exon 16 of 29)",13,30813919,30950298,136380,2,Exoc2-202,72892,Exoc2-202;Exoc2-201,Exoc2;Exoc2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,66482,ENSMUSG00000021357,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3895,cg27500609,0.0000141,0.000015,0.945207943,0.345288851,gain,ns,0.0000492,0.0000254,1.936034202,0.053772389,pos,ns,0.011020723,0.0074506,1.479172568,0.140109622,pos,ns,0.853532038,-0.000290795,0.000256226,-1.13491832,0.257286299,neg,ns,0.457798023,Celf4,Celf4_Intron,18,25694191,25694240,25694191,25694192,50,+,CGGCTCTCCAAGACGAAATTTTTCTACTGGGAACCGACAGCCGCAAATAA,"Intron (Celf4-202/Celf4, intron 1 of 12)",18,25477632,25753983,276352,2,Celf4-202,59743,Celf4-202;Celf4-201;Celf4-203;Celf4-207;Celf4-206;Celf4-209;Celf4-205,Celf4;Celf4;Celf4;Celf4;Celf4;Celf4;Celf4,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,59,108013,ENSMUSG00000024268,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13406,cg20754348,0.000141803,0.0000173,8.179667965,7.41E-15,gain,yes,-0.000057,0.0000295,-1.935969187,0.053780387,neg,ns,-0.010141935,0.00862833,-1.175422774,0.240727589,neg,ns,0.618474134,0.000267332,0.000296728,0.900933559,0.368323028,pos,ns,0.509771413,Nr2f2,Nr2f2_fiveUTR,7,70366408,70366457,70366456,70366457,50,-,ACAAGGTTTCAGGGAGCTTTGTACATAGCTGCTGAGGAATGCAAGCCTCG,Promoter (<=1kb),7,70354439,70366735,12297,2,Nr2f2-202,278,Nr2f2-202,Nr2f2,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,69,11819,ENSMUSG00000030551,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
19280,cg12180804,-0.00000909,0.00000823,-1.103433353,0.270694834,loss,ns,0.0000271,0.000014,1.935930836,0.053785105,pos,ns,0.001439785,0.00409785,0.351351449,0.72556338,pos,ns,0.139324645,-0.000122979,0.000140925,-0.872658216,0.383524816,neg,ns,0.389733155,Gm28266,Gm28266_Promoter,9,98931333,98931382,98931333,98931334,50,-,CGAGGAGGCCTGCTGGTGATTTGGAATGTCCCTTTGGAAGGCTTTTTAAT,Promoter (5-6kb),9,98925174,98925612,439,2,Gm28266-201,-5770,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7873,cg03826754,-0.000000726,0.00000107,-0.676592864,0.499168821,loss,ns,0.00000353,0.00000182,1.935648205,0.053819888,pos,ns,0.001353454,0.000533943,2.53482784,0.011741852,pos,ns,1.930263406,-0.0000288,0.0000184,-1.56719672,0.118088882,neg,ns,0.963703432,Gtdc1,Gtdc1_Intron,2,44575961,44576010,44576009,44576010,50,+,AAAATGGCATTGCAGTGACAGCTAAGATTCCTAATGACGGACTGCATTCG,"Intron (Gtdc1-203/Gtdc1, intron 7 of 10)",2,44564412,44861622,297211,2,Gtdc1-203,285612,Gtdc1-203;Gtdc1-201;Gtdc1-207;Gtdc1-208;Gtdc1-205,Gtdc1;Gtdc1;Gtdc1;Gtdc1;Gtdc1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,43,227835,ENSMUSG00000036890,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10156,cg25866143,0.00023389,0.0000213,10.97121144,7.00E-24,gain,yes,-0.0000701,0.0000362,-1.935555103,0.05383135,neg,ns,0.03471027,0.010610435,3.271333328,0.001191073,pos,ns,2.924061503,-0.001313277,0.000364892,-3.599084022,0.000371628,neg,ns,0.382506033,Gm28308,Gm28308_fiveUTR,6,52204386,52204435,52204386,52204387,50,-,CGGTCGTTTGTGCGTCTATAGCACCCTTGCACAATTTATGATGAATTATG,5' UTR,6,52163359,52213339,49981,2,Gm28308-201,8904,Gm28308-201;Hoxa3-201;Hoxa3-203;Hoxa5-201;Hoxa6-201,Gm28308;Hoxa3;Hoxa3;Hoxa5;Hoxa6,0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,21,103,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
17940,cg18335591,0.000270594,0.0000222,12.18529454,3.58E-28,gain,yes,-0.000073,0.0000377,-1.935358753,0.05385553,neg,ns,0.022209778,0.011052467,2.009486073,0.045351984,pos,ns,1.343403706,-0.001295475,0.000380093,-3.40830618,0.000740051,neg,ns,0.388790806,Runx1,Runx1_fiveUTR,16,92695722,92695771,92695722,92695723,50,-,CGGCTCGTGCTGGCATCTACGGGGATACGCATCACAACAAGCCGATTGAG,5' UTR,16,92601466,92826149,224684,2,Runx1-201,130378,Runx1-201;Runx1-202;Runx1-203;Runx1-205;Runx1-206;Runx1-204,Runx1;Runx1;Runx1;Runx1;Runx1;Runx1,0;0;0;-227;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,7,10,12394,ENSMUSG00000022952,mapped to different genes,16,92695398,92695878,481,*,481,36,0.636174636,0.74,0.074844075,5.11E-23,CpGisland,TRUE,U3,Pr-B
18212,cg00720992,0.0000858,0.0000107,7.992823939,2.63E-14,gain,yes,0.0000353,0.0000182,1.935331633,0.053858871,pos,ns,0.015073633,0.005345037,2.820117472,0.0051099,pos,ns,2.291587619,-0.0000841,0.000183815,-0.457369933,0.647725537,neg,ns,0.554488272,Celf3,Celf3_Intron,3,94484257,94484306,94484305,94484306,50,-,AATCAGGCTGAGTGGGCGGTTGCCATGGTGCGCATTCTCCCGTTGCCACG,"Intron (Celf3-214/Celf3, intron 3 of 4)",3,94478295,94485318,7024,1,Celf3-214,5962,Celf3-214;Celf3-208;Celf3-204;Celf3-215;Celf3-201;Celf3-213;Celf3-212;Celf3-207;Celf3-206;Celf3-211;Celf3-205;Celf3-209;Celf3-210;Celf3-202;Celf3-203;Riiad1-202,Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Riiad1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,12,78784,ENSMUSG00000028137,conserved gene and region,3,94484222,94484339,118,*,118,11,0.652542373,0.879403794,0.093220339,2.29E-08,CpGisland,TRUE,U11,Tr-P
6476,cg00193158,0.00000302,0.00000229,1.319021822,0.188135306,gain,ns,-0.00000753,0.00000389,-1.935171574,0.053878589,neg,ns,-0.004386295,0.001140634,-3.845488701,0.00014603,neg,ns,3.835557407,0.0000966,0.0000392,2.462593393,0.014337146,pos,ns,0.960117659,Inpp4a,Inpp4a_Exon,1,37403459,37403508,37403459,37403460,50,+,CGGGAGGTAGTCACCCAGAAGAACTTGAGCGGCCTGGTGCCCATCCGAGA,"Exon (Inpp4a-206/Inpp4a, exon 25 of 25)",1,37299891,37410736,110846,1,Inpp4a-201,103568,Inpp4a-201;Inpp4a-209;Inpp4a-205;Inpp4a-207;Inpp4a-206;Inpp4a-213;Inpp4a-208;Inpp4a-202;Inpp4a-203;Inpp4a-211,Inpp4a;Inpp4a;Inpp4a;Inpp4a;Inpp4a;Inpp4a;Inpp4a;Inpp4a;Inpp4a;Inpp4a,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,9,269180,ENSMUSG00000026113,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16980,cg07957035,-0.0000504,0.00000925,-5.452413834,0.000000102,loss,yes,0.0000304,0.0000157,1.935158363,0.053880217,pos,ns,0.010412323,0.004603282,2.261934461,0.024393736,pos,ns,1.612721686,-0.000633727,0.000158306,-4.003163714,0.0000783,neg,ns,0.679760687,Zfp423,Zfp423_Intron,8,87745261,87745310,87745309,87745310,50,+,CTCCCACACAGCTGAGTTCCATAGATGCATTATTAACGGCACATTCCTCG,"Intron (Zfp423-203/Zfp423, intron 3 of 5)",8,87661810,87804439,142630,2,Zfp423-203,59129,Zfp423-203;Zfp423-202;Zfp423-201,Zfp423;Zfp423;Zfp423,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,42,53,94187,ENSMUSG00000045333,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1907,cg12490365,0.00000703,0.00000185,3.791569385,0.000179911,gain,ns,-0.00000609,0.00000315,-1.935035446,0.053895364,neg,ns,0.000542205,0.000922211,0.587940509,0.557000273,pos,ns,0.254144592,-0.0000609,0.0000317,-1.921024011,0.055645589,neg,ns,0.95016806,Ythdf3,Ythdf3_Exon,3,16205029,16205078,16205029,16205030,50,+,CGTTTGGATGCAGCTTACCGTTCCCTGAATGGGAAAGGCCCACTCTATTT,"Exon (Ythdf3-201/Ythdf3, exon 4 of 5)",3,16183212,16217037,33826,1,Ythdf3-201,21817,Ythdf3-201;Ythdf3-204;Ythdf3-203;Ythdf3-202,Ythdf3;Ythdf3;Ythdf3;Ythdf3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,8,229096,ENSMUSG00000047213,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22439,cg25016721,0.00000777,0.00000469,1.656586522,0.098614842,gain,ns,-0.0000154,0.00000797,-1.934988092,0.053901201,neg,ns,-0.005020889,0.002335504,-2.149809379,0.032343755,neg,ns,1.490209563,0.0000654,0.0000803,0.814840269,0.41578929,pos,ns,0.867253263,Gm11689,Gm11689_Intergenic_upstream,11,114544658,114544707,114544706,114544707,50,+,AAAATAAAAATTGTAATCGAATCTTGCTTGACATTCTTTACACCCACTCG,Distal Intergenic,11,114664608,114664909,302,1,Gm11689-201,-119901,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,100462962,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13864,cg09912328,-0.00000415,0.00000332,-1.248335756,0.212850109,loss,ns,0.0000109,0.00000565,1.934727718,0.053933302,pos,ns,0.004311889,0.001653876,2.607141349,0.009571674,pos,ns,2.019012112,-0.000146157,0.0000569,-2.569719845,0.010645234,neg,ns,0.947967475,Ola1,Ola1_Intron,2,73124094,73124143,73124142,73124143,50,+,TGTAATGATTCATAGTGTCTCTAATAGAAAGATTCAGCAGTTCTCAATCG,"Intron (Ola1-201/Ola1, intron 7 of 10)",2,73092801,73214447,121647,2,Ola1-201,90304,Ola1-201;Ola1-206;Ola1-203,Ola1;Ola1;Ola1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,19,67059,ENSMUSG00000027108,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20788,cg04845649,0.000229549,0.0000154,14.88310838,3.56E-38,gain,yes,-0.0000507,0.0000262,-1.934309338,0.053984917,neg,ns,-0.009941431,0.007676416,-1.2950615,0.19626267,neg,ns,0.707162297,0.000748547,0.000263991,2.835500231,0.004876166,pos,ns,0.737229212,Hsf4,Hsf4_Exon,8,105270585,105270634,105270585,105270586,50,+,CGCCAAGGAAGTGCTGCCCCAGTATTTCAAGCATAGCAACATGGCGAGCT,Promoter (<=1kb),8,105269801,105275686,5886,1,Hsf4-205,784,Fbxl8-201;Fbxl8-202;Hsf4-205;Hsf4-201;Hsf4-202;Hsf4-204;Hsf4-203;Hsf4-207;Hsf4-206,Fbxl8;Fbxl8;Hsf4;Hsf4;Hsf4;Hsf4;Hsf4;Hsf4;Hsf4,5937;5903;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,26386,ENSMUSG00000033249,conserved gene but different region,8,105270477,105270586,110,*,110,9,0.590909091,0.9375,0.081818182,0.00000205,CpGisland,TRUE,U13,Hc-P
16744,cg04554246,-7.07E-08,0.00000151,-0.046878604,0.962640166,loss,ns,0.00000496,0.00000256,1.934163632,0.054002903,pos,ns,0.000106255,0.00075088,0.141506993,0.88756135,pos,ns,0.051801618,0.0000109,0.0000258,0.42239218,0.673031596,pos,ns,0.95531427,Lrba,Lrba_Intron,3,86379083,86379132,86379131,86379132,50,+,ACTTTGTAGACTAGAAATCATTCCTTCGGATACTCAACAGTCCACTATCG,"Intron (Lrba-202/Lrba, intron 34 of 50)",3,86224680,86746712,522033,1,Lrba-202,154403,Lrba-202;Lrba-204;Lrba-201;Lrba-208,Lrba;Lrba;Lrba;Lrba,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,45,80877,ENSMUSG00000028080,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11839,cg14232398,0.00000744,0.00000254,2.925962286,0.003687576,gain,ns,-0.00000836,0.00000432,-1.934079725,0.054013262,neg,ns,-0.001684949,0.001266297,-1.330610398,0.184295163,neg,ns,0.734486062,0.0000294,0.0000435,0.67452831,0.500478206,pos,ns,0.888762304,Sgpl1,Sgpl1_Exon,10,61103137,61103186,61103185,61103186,50,-,GAGCAGTTTTGATGATCTGTTTGGTAGCTTCAACATAGCCGTTCTCACCG,"Exon (Sgpl1-202/Sgpl1, exon 12 of 15)",10,61098642,61147644,49003,2,Sgpl1-202,44458,Sgpl1-202;Sgpl1-201;Sgpl1-208;Sgpl1-207;Sgpl1-209,Sgpl1;Sgpl1;Sgpl1;Sgpl1;Sgpl1,0;0;0;-12;2291,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,20397,ENSMUSG00000020097,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10525,cg17950628,-0.0000262,0.00000588,-4.453119759,0.0000118,loss,ns,0.0000193,0.00000999,1.933935008,0.054031133,pos,ns,0.002614084,0.002925644,0.893507444,0.372278608,pos,ns,0.429131919,-0.000154942,0.000100613,-1.539983562,0.124584457,neg,ns,0.865218441,Npas3,Npas3_Intron,12,54001005,54001054,54001053,54001054,50,+,TAAAATAGAACTGCACGGCTGACTGACAGTTCTGATCTAAAGCATTTACG,"Intron (Npas3-204/Npas3, intron 5 of 10)",12,53248157,54069532,821376,1,Npas3-204,752848,Npas3-204;Npas3-201;Npas3-203,Npas3;Npas3;Npas3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,83,103,27386,ENSMUSG00000021010,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17992,cg27629266,0.000024,0.00000294,8.150344391,9.05E-15,gain,yes,-0.00000966,0.000005,-1.933534914,0.054080567,neg,ns,0.002807373,0.001463656,1.918055104,0.056022493,pos,ns,1.251637566,-0.000012,0.0000503,-0.239244172,0.811074348,neg,ns,0.918621873,Arx,Arx_Promoter,X,93282815,93282864,93282863,93282864,50,+,TCCTCCTAACACTGCAATAACGCGCTCCAGTGTTAAATTAGCAGGTTGCG,Promoter (3-4kb),20,93286445,93288382,1938,1,Arx-203,-3581,Arx-203;Arx-201;Arx-202,Arx;Arx;Arx,-3581;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,7,32,11878,ENSMUSG00000035277,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
396,cg05470767,-0.000000942,0.000000977,-0.963736758,0.335929087,loss,ns,0.00000321,0.00000166,1.933343394,0.054104243,pos,ns,0.000525524,0.000486302,1.080653516,0.280691255,pos,ns,0.551771118,-0.00000849,0.0000167,-0.50746681,0.612188149,neg,ns,0.974446572,Zfhx4,Zfhx4_Intron,3,5357959,5358008,5358007,5358008,50,-,GCAAATGACTGAATCGATAGGAAACCAGCCACTGCTGTTTAAGTGTATCG,"Intron (Zfhx4-203/Zfhx4, intron 4 of 10)",3,5218526,5413165,194640,1,Zfhx4-203,139433,Zfhx4-203;Zfhx4-201;Zfhx4-205,Zfhx4;Zfhx4;Zfhx4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,27,77,80892,ENSMUSG00000025255,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14207,cg19949929,-0.00000314,0.00000195,-1.607248948,0.109017783,loss,ns,0.00000641,0.00000332,1.933317474,0.054107448,pos,ns,0.002077106,0.000971724,2.137547133,0.033335566,pos,ns,1.477092168,-0.000038,0.0000334,-1.136947148,0.256438446,neg,ns,0.058292953,Mnt,Mnt_fiveUTR,11,74831327,74831376,74831327,74831328,50,-,CGATGAGCATAGAGACGCTACTGGAGGCGGCCCGCTTCCTGGAATGGCAA,Promoter (<=1kb),11,74830920,74845725,14806,1,Mnt-201,407,Mettl16-205;Mnt-201;Mnt-203,Mettl16;Mnt;Mnt,60497;0;-4950,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,17,17428,ENSMUSG00000000282,conserved gene and region,11,74831171,74831413,243,*,243,27,0.720164609,0.867168914,0.111111111,3.45E-22,CpGisland,TRUE,U1,Pr-A
4041,cg26032885,-0.00000927,0.00000516,-1.796621801,0.073369087,loss,ns,0.0000169,0.00000876,1.933148823,0.054128306,pos,ns,-0.001515105,0.002567419,-0.590127787,0.55553489,neg,ns,0.25528866,0.0000435,0.0000883,0.492686466,0.622582915,pos,ns,0.813445946,Gm45647,Gm45647_Intergenic_upstream,8,26626638,26626687,26626686,26626687,50,+,AACCTGAGGCAGTTTGTTTTCCAAATCGGCCTCTCGGCTGTGACTTTACG,Distal Intergenic,8,26780315,26780509,195,1,Gm45647-201,-153628,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,46,62,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2596,cg15642312,0.0000444,0.00000874,5.083722068,0.000000641,gain,yes,-0.0000287,0.0000148,-1.933057303,0.054139627,neg,ns,0.004769108,0.00434826,1.096785341,0.273586492,pos,ns,0.562905348,-0.000424915,0.000149536,-2.841554041,0.004786877,neg,ns,0.136246633,Eif4g1,Eif4g1_Intron,16,20678122,20678171,20678122,20678123,50,-,CGCCTCTGCTCAGTCCTCAAGCCCTGGGCGTGGTGCCCAGAATAGGGTGC,"Intron (Eif4g1-220/Eif4g1, intron 3 of 5)",16,20668313,20679395,11083,1,Eif4g1-220,9809,Eif4g1-220;Eif4g1-208;Eif4g1-201;Eif4g1-206;Eif4g1-216;Eif4g1-202;Eif4g1-217;Eif4g1-207;Eif4g1-218;Eif4g1-225;Eif4g1-214;Eif4g1-203;Eif4g1-222;Eif4g1-221;Eif4g1-205;Eif4g1-212;Eif4g1-204;Eif4g1-215;Eif4g1-219;Eif4g1-210;Eif4g1-211;Eif4g1-213,Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;-235;-2868,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,10,208643,ENSMUSG00000045983,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12776,cg16007161,-0.0000018,0.000001,-1.796229431,0.073431589,loss,ns,0.00000329,0.0000017,1.93303075,0.054142913,pos,ns,-0.00000434,0.000498304,-0.008709613,0.993056424,neg,ns,0.003026075,0.00000368,0.0000171,0.214972128,0.829930402,pos,ns,0.970144651,Rsrc1,Rsrc1_Intron,3,67147468,67147517,67147468,67147469,50,-,CGCCAGCTTGAAATGGAACCGGCAGGCTTGATTTGCAAATGAATTAGAGC,"Intron (Rsrc1-206/Rsrc1, intron 4 of 9)",3,66981390,67356559,375170,1,Rsrc1-206,166078,Rsrc1-206;Rsrc1-203;Rsrc1-202;Rsrc1-201;Rsrc1-209;Rsrc1-205,Rsrc1;Rsrc1;Rsrc1;Rsrc1;Rsrc1;Rsrc1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,37,66880,ENSMUSG00000034544,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4190,cg22851118,-0.0000191,0.00000437,-4.379298056,0.0000163,loss,ns,0.0000144,0.00000743,1.932923361,0.0541562,pos,ns,0.002756525,0.002175732,1.266941035,0.206127375,pos,ns,0.685864328,-0.000144376,0.0000748,-1.929561915,0.054573511,neg,ns,0.917900448,Gm7729,Gm7729_Intergenic_upstream,18,27410871,27410920,27410919,27410920,50,-,ATATCCCAAATCCAGTTTGAATTTAAATTAGATTCATATTTTCTTTCACG,Distal Intergenic,18,27598644,27599756,1113,1,Gm7729-201,-187773,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,22,665646,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11587,cg15103885,0.0000246,0.00000569,4.319519519,0.0000211,gain,ns,-0.0000187,0.00000967,-1.932873831,0.05416233,neg,ns,-0.008127011,0.002832819,-2.868877391,0.004402094,neg,ns,2.356340668,0.0000327,0.0000974,0.335787027,0.737258619,pos,ns,0.893675386,Med12l,Med12l_threeUTR,3,59297781,59297830,59297829,59297830,50,+,CTTTGCCAGACTGAACCATCAGGCTCTACAGCAGAGCCCTCTGGTGGGCG,3' UTR,3,59006487,59318682,312196,1,Med12l-206,291294,Med12l-206;Med12l-202;Med12l-204;Med12l-205,Med12l;Med12l;Med12l;Med12l,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,9,329650,ENSMUSG00000056476,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10148,cg07608009,0.000225807,0.0000222,10.16532836,3.87E-21,gain,yes,-0.0000729,0.0000377,-1.932728355,0.054180336,neg,ns,0.028667743,0.011055867,2.592989162,0.009965711,pos,ns,2.001491696,-0.000906483,0.00038021,-2.384160623,0.017719478,neg,ns,0.271764545,Gm28308,Gm28308_Exon,6,52204189,52204238,52204237,52204238,50,+,GAGATCCATGCCATTGTAGCCGTAGCCGTACCTGCCGGAGTGCATGCTCG,"Exon (Hoxa5-201/Hoxa5, exon 1 of 2)",6,52163359,52213339,49981,2,Gm28308-201,9101,Gm28308-201;Hoxa3-201;Hoxa3-203;Hoxa5-201;Hoxa6-201,Gm28308;Hoxa3;Hoxa3;Hoxa5;Hoxa6,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,30,103,,NA,mapped to different genes,6,52203658,52204321,664,*,664,70,0.680722892,0.922222222,0.105421687,5.32E-55,CpGisland,TRUE,U3,Pr-B
12881,cg11592089,0.0000208,0.00000369,5.636624666,0.000000039,gain,yes,-0.0000121,0.00000627,-1.932690619,0.054185008,neg,ns,-0.002439153,0.001837659,-1.327315708,0.185380954,neg,ns,0.731934886,0.000065,0.0000632,1.028162278,0.304675052,pos,ns,0.906713774,Cep76,Cep76_Exon,18,67637297,67637346,67637345,67637346,50,-,TGTTCCAAGAAAGCTTTTCCACCCAAAACCTGAAGGTAAAGATACCTCCG,"Exon (Cep76-201/Cep76, exon 4 of 12)",18,67617800,67641336,23537,2,Cep76-201,3990,Cep76-201;Cep76-202;Cep76-203;Psmg2-201;Psmg2-202;Psmg2-203,Cep76;Cep76;Cep76;Psmg2;Psmg2;Psmg2,0;0;0;-4253;-4255;-4262,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,225659,ENSMUSG00000073542,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20704,cg01720337,-0.0000243,0.00000892,-2.72648546,0.006765562,loss,ns,0.0000293,0.0000152,1.932616202,0.054194221,pos,ns,-0.005738019,0.004438741,-1.292713226,0.197072906,neg,ns,0.705373079,0.000180102,0.000152648,1.179849319,0.238964754,pos,ns,0.720673374,Cntn6,Cntn6_fiveUTR,6,104493179,104493228,104493179,104493180,50,-,CGGCTTGGTTCTGCCTGGACGCACAGCATGCCTGGCTGAGAGCTTGAAAC,Promoter (<=1kb),6,104492790,104642949,150160,1,Cntn6-204,389,Cntn6-204;Cntn6-202;Cntn6-201;Cntn6-203;Cntn6-205,Cntn6;Cntn6;Cntn6;Cntn6;Cntn6,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,4,53870,ENSMUSG00000030092,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10464,cg08055380,-0.00000277,0.00000714,-0.388577427,0.697855504,loss,ns,-0.0000234,0.0000121,-1.932584164,0.054198188,neg,ns,-0.009951766,0.003554296,-2.799925794,0.00543214,neg,ns,2.265029027,0.000232489,0.000122232,1.902034906,0.058093314,pos,ns,0.856594765,Neil3,Neil3_Intergenic_upstream,8,53682937,53682986,53682937,53682938,50,+,CGAATCATATTTTTATGAGGCTGCTGAAGAGTAGCTGAGTGTTGAATCAA,Distal Intergenic,8,53586867,53639065,52199,2,Neil3-201,-43872,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,234258,ENSMUSG00000039396,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3312,cg20107824,-0.0000211,0.00000503,-4.199061234,0.0000351,loss,ns,0.0000165,0.00000854,1.932476958,0.054211465,pos,ns,-0.002488391,0.002501976,-0.994570411,0.320720922,neg,ns,0.493872709,0.00013739,0.000086,1.596769075,0.111336026,pos,ns,0.885787603,Kcnma1,Kcnma1_Exon,14,23526756,23526805,23526756,23526757,50,-,CGTATTTCTTGCGGTTTCCTATTAACTCTATGATTTCAGGGACGTAGCTG,"Exon (Kcnma1-207/Kcnma1, exon 8 of 28)",14,23289431,23803304,513874,2,Kcnma1-207,276499,Kcnma1-207;Kcnma1-210;Kcnma1-205;Kcnma1-201;Kcnma1-208;Kcnma1-209;Kcnma1-212;Kcnma1-204;Kcnma1-202;Kcnma1-211;Kcnma1-229;Kcnma1-234;Kcnma1-223;Kcnma1-214;Kcnma1-216;Kcnma1-219;Kcnma1-220;Kcnma1-224;Kcnma1-233;Kcnma1-236;Kcnma1-237;Kcnma1-213;Kcnma1-228;Kcnma1-203;Kcnma1-206;Kcnma1-221;Kcnma1-225;Kcnma1-226;Kcnma1-230;Kcnma1-235;Kcnma1-217;Kcnma1-238;Kcnma1-231;Kcnma1-218;Kcnma1-222;Kcnma1-232,Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,16,41,16531,ENSMUSG00000063142,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20504,cg13058338,0.00000174,0.00000215,0.81081208,0.418095633,gain,ns,0.00000706,0.00000365,1.932396545,0.054221425,pos,ns,0.001888403,0.001069643,1.765452199,0.078472226,pos,ns,1.105284029,-0.0000218,0.0000368,-0.59394019,0.552985272,neg,ns,0.0562202,Smug1,Smug1_Intergenic_downstream,15,103146996,103147045,103146996,103146997,50,+,CGCGGGCTGGTTATGCATTTAAATGTTATTTAATTGGATTGCGGAGGAGC,Distal Intergenic,15,103153307,103158002,4696,2,Smug1-201,10957,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,12,71726,ENSMUSG00000036061,conserved gene but different region,15,103146760,103147175,416,*,416,53,0.694711539,1.056545908,0.127403846,1.14E-46,CpGisland,TRUE,U3,Pr-B
14773,cg15729697,0.000000378,0.000000939,0.402233324,0.687789518,gain,ns,0.00000308,0.00000159,1.932394938,0.054221624,pos,ns,0.000927252,0.000467278,1.984368304,0.048096269,pos,ns,1.317888611,-0.000015,0.0000161,-0.933565274,0.351254753,neg,ns,0.974882261,Gm11146,Gm11146_Exon,16,77598925,77598974,77598973,77598974,50,-,TTGCCCATTGGCATAAACCCGTAGATCCGATCTTGTGGTGAAGTGGACCG,"Exon (Mir99a-201/Mir99a-201, exon 1 of 1)",16,77588578,77602094,13517,2,Gm11146-201,3120,Gm11146-201,Gm11146,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,21,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24701,cg27300841,0.00000197,0.000000758,2.600320459,0.00975981,gain,ns,-0.00000249,0.00000129,-1.93225084,0.054239476,neg,ns,-0.000332719,0.000377426,-0.881547646,0.378704464,neg,ns,0.421699575,0.0000133,0.000013,1.024733301,0.306288,pos,ns,0.014549478,Bcl7c,Bcl7c_Exon,7,127708442,127708491,127708442,127708443,50,+,CGGACCTTCTCGATGGTCGCCATCACCTTCTTGATGTCATCCTTGGCCCG,Promoter (<=1kb),7,127666952,127708462,41511,2,Bcl7c-206,0,Bcl7c-202;Bcl7c-205;Bcl7c-206;Bcl7c-207;Bcl7c-201;Bcl7c-204;Bcl7c-203;Ctf1-201;Ctf1-205;Ctf1-204;Ctf1-203,Bcl7c;Bcl7c;Bcl7c;Bcl7c;Bcl7c;Bcl7c;Bcl7c;Ctf1;Ctf1;Ctf1;Ctf1,0;0;0;0;0;-1138;-367;-4245;-4446;-4453;-4809,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,12055,ENSMUSG00000030814,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
26185,cg06254866,-0.00000801,0.00000346,-2.317678031,0.021117705,loss,ns,0.0000113,0.00000587,1.932002241,0.054270287,pos,ns,0.002738008,0.001720453,1.591445891,0.112528444,pos,ns,0.948737685,-0.000128299,0.0000592,-2.168454873,0.030884359,neg,ns,0.949713434,Snx5,Snx5_Exon,2,144257904,144257953,144257904,144257905,50,-,CGATCTTTACTGAGAACAGGGTGAGAAGAAAGCCGCTGAAGAAAGACTTC,"Exon (Snx5-201/Snx5, exon 5 of 13)",2,144250123,144270572,20450,2,Snx5-201,12619,Gm11688-201;Snx5-201;Snx5-202;Snx5-205;Snx5-208;Snx5-203;Snx5-206,Gm11688;Snx5;Snx5;Snx5;Snx5;Snx5;Snx5,3588;0;0;-4199;-2501;-2522;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,69178,ENSMUSG00000027423,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13354,cg22933950,-0.000000692,0.00000408,-0.169632782,0.865409582,loss,ns,-0.0000134,0.00000693,-1.931990346,0.054271761,neg,ns,0.002411633,0.002029534,1.188269357,0.235636847,pos,ns,0.627756797,-0.0000366,0.0000698,-0.524848092,0.600063926,neg,ns,0.904321033,Slc39a14,Slc39a14_Exon,14,70315700,70315749,70315700,70315701,50,-,CGTTCCAATGGACAGGGCGATGAAGTAAGTGAGCACACGGCTGAAAAACG,"Exon (Slc39a14-210/Slc39a14, exon 5 of 10)",14,70303469,70351425,47957,2,Slc39a14-202,35676,Slc39a14-202;Slc39a14-210;Slc39a14-201;Slc39a14-213;Slc39a14-207;Slc39a14-208;Slc39a14-211;Slc39a14-212;Slc39a14-206;Slc39a14-209;Slc39a14-203;Slc39a14-204,Slc39a14;Slc39a14;Slc39a14;Slc39a14;Slc39a14;Slc39a14;Slc39a14;Slc39a14;Slc39a14;Slc39a14;Slc39a14;Slc39a14,0;0;0;-4460;-1775;0;0;18449;35645;8065;35666;15769,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,213053,ENSMUSG00000022094,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26255,cg07173856,-0.0000121,0.00000705,-1.723065112,0.085873941,loss,ns,0.0000231,0.000012,1.931961072,0.05427539,pos,ns,0.008015954,0.003507202,2.285569386,0.022954234,pos,ns,1.639137202,-0.00034854,0.000120612,-2.889757,0.004127282,neg,ns,0.893459762,Slc24a3,Slc24a3_threeUTR,2,145641468,145641517,145641468,145641469,50,+,CGTCAATTAAGTCCCAATTTGCCACTTGGTATTGAGTACACTGGACCCTG,3' UTR,2,145167754,145642166,474413,1,Slc24a3-202,473714,Slc24a3-202;Slc24a3-204;Slc24a3-201,Slc24a3;Slc24a3;Slc24a3,0;0;396496,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,94249,ENSMUSG00000063873,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18622,cg03260240,0.000300171,0.0000202,14.87645319,3.77E-38,gain,yes,-0.0000662,0.0000343,-1.931870629,0.054286604,neg,ns,0.026867074,0.010042585,2.675314593,0.007862397,pos,ns,2.104445058,-0.000267131,0.000345364,-0.773478471,0.439828674,neg,ns,0.187400556,Hoxb3,Hoxb3_fiveUTR,11,96341078,96341127,96341078,96341079,50,-,CGCCTGCCGCTCGCTCTGGGGCTCGATGTGAATATATATTATGTCTGCCT,5' UTR,11,96323326,96347930,24605,1,Hoxb3-202,17752,Hoxb3-202;Hoxb3-203;Hoxb3-204;Hoxb3-201,Hoxb3;Hoxb3;Hoxb3;Hoxb3,0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,19,15410,ENSMUSG00000048763,conserved gene and region,11,96341078,96341142,65,*,65,7,0.584615385,1.274509804,0.107692308,0.00000802,CpGisland,TRUE,U3,Pr-B
8184,cg27404067,0.0000725,0.00000815,8.898904514,4.81E-17,gain,yes,-0.0000268,0.0000138,-1.931858962,0.054288051,neg,ns,0.003139171,0.004057486,0.773673958,0.439713204,pos,ns,0.356830493,0.000193291,0.000139537,1.385238065,0.16697563,pos,ns,0.557232773,Pax2,Pax2_Exon,19,44835437,44835486,44835485,44835486,50,+,CTACAACGAGGCTTGGAGATTCAGCAACCCCGCCTTACTAAGTGAGTACG,"Exon (Pax2-203/Pax2, exon 9 of 10)",19,44756045,44837851,81807,1,Pax2-203,79392,Pax2-203;Pax2-201,Pax2;Pax2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,16,166,18504,ENSMUSG00000004231,conserved gene but different region,19,44835351,44835665,315,*,315,22,0.641269841,0.692653673,0.06984127,1.18E-13,CpGisland,TRUE,U13,Hc-P
10197,cg06931862,0.0000351,0.00000486,7.231512602,3.76E-12,gain,yes,-0.0000159,0.00000825,-1.931700311,0.054307726,neg,ns,-0.001281817,0.002418029,-0.530108325,0.59641631,neg,ns,0.224450488,0.000131071,0.0000832,1.576212914,0.115996657,pos,ns,0.091423081,Hoxa9,Hoxa9_fiveUTR,6,52226298,52226347,52226298,52226299,50,+,CGCTATTAATGGTCCGATGTTTTGCAGTCATAATTTTTATAGCAAAAGCC,5' UTR,6,52223100,52227370,4271,2,Hoxa9-201,1023,Hoxa10-202;Hoxa10-203;Hoxa7-204;Hoxa9-201;Hoxa9-203;Hoxa9-202;Hoxa9-204;Hoxa9-205,Hoxa10;Hoxa10;Hoxa7;Hoxa9;Hoxa9;Hoxa9;Hoxa9;Hoxa9,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,14,15405,ENSMUSG00000038227,mapped to different genes,6,52226223,52226313,91,*,91,15,0.659340659,1.6039953,0.164835165,2.40E-15,CpGisland,TRUE,U3,Pr-B
27460,cg19693518,-0.0000111,0.00000577,-1.930058705,0.054511667,loss,ns,-0.0000189,0.00000981,-1.931642911,0.054314846,neg,ns,-0.00823143,0.002873071,-2.865028753,0.004454532,neg,ns,2.351197929,0.0000543,0.0000988,0.549528555,0.583038424,pos,ns,0.759494379,Pbx1,Pbx1_Intron,1,168288474,168288523,168288522,168288523,50,-,AGTATCAGCTCAGAAACATATGGGCCACACAGAGAAGATAGCCGCTGACG,"Intron (Pbx1-208/Pbx1, intron 2 of 7)",1,168119364,168432270,312907,2,Pbx1-208,143747,Pbx1-208;Pbx1-205;Pbx1-206;Pbx1-201;Pbx1-202;Pbx1-204,Pbx1;Pbx1;Pbx1;Pbx1;Pbx1;Pbx1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,84,18514,ENSMUSG00000052534,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
22307,cg07998596,-0.00000271,0.0000042,-0.643677914,0.520260215,loss,ns,0.0000138,0.00000714,1.931608837,0.054319074,pos,ns,0.003725766,0.002091895,1.781048076,0.07588368,pos,ns,1.119851619,-0.000117343,0.0000719,-1.631123375,0.103879762,neg,ns,0.920981342,Setd5,Setd5_Exon,6,113112454,113112503,113112502,113112503,50,+,TTGTTCTACTTGTTTTCCTCCTTGGGATAGGCATTTCGAGAGGGATCCCG,"Exon (Setd5-214/Setd5, exon 1 of 1)",6,113077365,113153435,76071,1,Setd5-201,35089,Setd5-209;Setd5-201;Setd5-205;Setd5-203;Setd5-212;Setd5-202;Setd5-204;Setd5-210;Setd5-214;Setd5-207,Setd5;Setd5;Setd5;Setd5;Setd5;Setd5;Setd5;Setd5;Setd5;Setd5,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,19,72895,ENSMUSG00000034269,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11457,cg02479825,-0.00000955,0.0000039,-2.445252685,0.015031274,loss,ns,-0.0000128,0.00000663,-1.931469323,0.054336384,neg,ns,-0.001019645,0.001943485,-0.524647777,0.600203031,neg,ns,0.221701815,-0.0000752,0.0000668,-1.124402804,0.26171207,neg,ns,0.933546664,Hnrnpk,Hnrnpk_threeUTR,13,58397521,58397570,58397569,58397570,50,-,TGCAACACTTGAAGCTGTGCTCCTTCCATCGAAATAAAATTAGTGGATCG,3' UTR,13,58391142,58403343,12202,2,Hnrnpk-202,5773,Hnrnpk-202;Hnrnpk-224;Hnrnpk-221;Hnrnpk-232;Hnrnpk-216;Hnrnpk-201;Hnrnpk-205;Hnrnpk-217;Hnrnpk-206;Hnrnpk-209;Hnrnpk-213;Hnrnpk-227;Hnrnpk-234;Hnrnpk-233;Hnrnpk-228;Hnrnpk-214;Hnrnpk-215;Hnrnpk-211;Hnrnpk-208;Hnrnpk-212;Hnrnpk-231;Hnrnpk-230;Hnrnpk-203;Hnrnpk-218;Hnrnpk-226;Hnrnpk-207;Hnrnpk-219;Hnrnpk-225;Hnrnpk-229;Hnrnpk-223;Hnrnpk-220;Hnrnpk-210;Hnrnpk-204;Hnrnpk-222;Rmi1-205;Rmi1-201,Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Rmi1;Rmi1,0;0;0;0;0;0;0;-3653;-2736;-3546;-2323;-3437;-3632;-3351;-2825;0;-1801;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;4932;4485;-4678;-4693,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,19,15387,ENSMUSG00000021546,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
645,cg19333286,0.00000604,0.00000505,1.195125738,0.232951399,gain,ns,-0.0000166,0.00000859,-1.931380991,0.054347346,neg,ns,-0.001886746,0.002515651,-0.750003148,0.45382163,neg,ns,0.343114808,-0.0000423,0.0000865,-0.489141665,0.625087302,neg,ns,0.864373379,2700081O15Rik,2700081O15Rik_Exon,19,7421236,7421285,7421284,7421285,50,-,TTCCCTCCAACCCTTTCAGGCAAAGCCCCAGCTGGTGGGGGCTGCCGGCG,"Exon (2700081O15Rik-202/2700081O15Rik, exon 3 of 5)",19,7417625,7425904,8280,1,2700081O15Rik-202,3611,2700081O15Rik-202;2700081O15Rik-205;2700081O15Rik-204;2700081O15Rik-206;2700081O15Rik-201;2700081O15Rik-203;Rtn3-203;Rtn3-202;Rtn3-204;Rtn3-201,2700081O15Rik;2700081O15Rik;2700081O15Rik;2700081O15Rik;2700081O15Rik;2700081O15Rik;Rtn3;Rtn3;Rtn3;Rtn3,0;2519;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,Exon,1,2,108899,ENSMUSG00000053080,conserved gene and region,19,7421281,7421530,250,*,250,23,0.724,0.71570824,0.092,5.64E-17,CpGisland,TRUE,NA,NRS
19446,cg04287515,0.000002,0.00000681,0.29409497,0.768882151,gain,ns,-0.0000223,0.0000116,-1.931357073,0.054350315,neg,ns,0.000695265,0.003387828,0.205224451,0.837531457,pos,ns,0.076998872,-0.000137166,0.000116507,-1.177316905,0.239972144,neg,ns,0.877807997,Gm12689,Gm12689_Intergenic_downstream,4,99322365,99322414,99322413,99322414,50,-,GATTGTGTCTGCCTCTACACATATCTGTAATTGATTGCCTAAACCCTACG,Distal Intergenic,4,99295900,99297258,1359,1,Gm12689-201,26514,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,12,26,100137011,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10921,cg13371970,0.00000255,0.00000342,0.744027181,0.457423609,gain,ns,0.0000112,0.00000581,1.931127169,0.054378856,pos,ns,0.004139372,0.001703584,2.429802231,0.015674626,pos,ns,1.804802815,-0.00009,0.0000586,-1.535714078,0.125628494,neg,ns,0.929185788,Tcf7l2,Tcf7l2_Intron,19,55888017,55888066,55888065,55888066,50,-,GTTGACAGAATTTACAATGAGAGCAGAGACCGCATAATGGGACCGCTGCG,"Intron (Tcf7l2-213/Tcf7l2, intron 4 of 13)",19,55741820,55933229,191410,1,Tcf7l2-213,146197,Tcf7l2-213;Tcf7l2-201;Tcf7l2-208;Tcf7l2-211;Tcf7l2-212;Tcf7l2-206;Tcf7l2-204;Tcf7l2-205;Tcf7l2-222;Tcf7l2-215;Tcf7l2-214;Tcf7l2-207;Tcf7l2-202;Tcf7l2-209;Tcf7l2-210;Tcf7l2-217,Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,55,88,21416,ENSMUSG00000024985,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4109,cg19667824,-0.0000396,0.00000909,-4.356135249,0.000018,loss,ns,0.0000298,0.0000154,1.930792847,0.054420383,pos,ns,-0.003906973,0.004526141,-0.863201813,0.388693848,neg,ns,0.410392333,0.000477452,0.000155654,3.067399796,0.002349715,pos,ns,0.607243406,Gm45647,Gm45647_Intergenic_downstream,8,26808630,26808679,26808678,26808679,50,-,ACAATCCACCCACATTAGTTCTGCAGAAATGTTGGCAACTGAAACAAACG,Distal Intergenic,8,26780315,26780509,195,1,Gm45647-201,28364,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,62,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23191,cg27380999,0.0000482,0.00000631,7.641816576,2.70E-13,gain,yes,-0.0000207,0.0000107,-1.930781027,0.054421852,neg,ns,0.013958163,0.003139941,4.445358762,0.0000122,pos,ns,4.912383279,-0.000259523,0.000107982,-2.40338133,0.016831323,neg,ns,0.122215023,Ksr2,Ksr2_Exon,5,117414848,117414897,117414848,117414849,50,-,CGAAAAGCGAGGAGCAGCAGCCTCTGAGTTTGCAAAAAGCCTTACAGCAG,Promoter (<=1kb),5,117414000,117555942,141943,1,Ksr2-201,848,Ksr2-201;Ksr2-202,Ksr2;Ksr2,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,333050,ENSMUSG00000061578,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
9407,cg20126035,0.0000194,0.0000043,4.51864957,0.00000886,gain,ns,0.0000141,0.00000731,1.930612252,0.054442827,pos,ns,0.010291302,0.002140578,4.807720523,0.00000238,pos,ns,5.622606259,-0.000106842,0.0000736,-1.451375187,0.147686617,neg,ns,0.114573406,Otx2,Otx2_Intron,14,48667666,48667715,48667666,48667667,50,+,CGGGGGGACGAGCAGGCAACAAATCCAGGCCTCCGACATTACCAGAATGT,"Intron (Otx2-210/Otx2, intron 1 of 4)",14,48657851,48673819,15969,2,Otx2-210,6104,Otx2-209;Otx2-201;Otx2-210;Otx2-204;Otx2-202;Otx2-208;Otx2-207;Otx2-205;Otx2-203;Otx2-211,Otx2;Otx2;Otx2;Otx2;Otx2;Otx2;Otx2;Otx2;Otx2;Otx2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,15,18424,ENSMUSG00000021848,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
5372,cg05681548,0.0000116,0.00000215,5.399390474,0.000000133,gain,yes,-0.00000704,0.00000364,-1.930607393,0.054443431,neg,ns,0.000383189,0.001067628,0.358916627,0.719901787,pos,ns,0.142726749,0.00000502,0.0000367,0.136828149,0.891255452,pos,ns,0.020920217,Lmx1b,Lmx1b_Exon,2,33639477,33639526,33639525,33639526,50,-,AGAAGCGCTTACTGTTGGTAGTCTTGTTTGCAGTACAGTTTCCGATCCCG,"Exon (Lmx1b-201/Lmx1b, exon 2 of 8)",2,33560965,33640608,79644,2,Lmx1b-201,1082,Lmx1b-201;Lmx1b-203;Lmx1b-204,Lmx1b;Lmx1b;Lmx1b,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,26,16917,ENSMUSG00000038765,conserved gene and region,2,33639200,33640032,833,*,833,76,0.673469388,0.805752832,0.091236495,1.56E-54,CpGisland,TRUE,U3,Pr-B
20039,cg11600027,-0.00000091,0.00000278,-0.327144321,0.743779523,loss,ns,0.00000913,0.00000473,1.930296208,0.054482122,pos,ns,0.00217931,0.001384966,1.573547356,0.116612134,pos,ns,0.933256256,-0.0000166,0.0000476,-0.347834312,0.728200681,neg,ns,0.94078242,Trim44,Trim44_threeUTR,2,102300124,102300173,102300172,102300173,50,-,TTTCCAGTAATAGTTTATTGATTTCCAAATGCACAGGGGCACCAAGTCCG,3' UTR,2,102300119,102400900,100782,2,Trim44-201,100727,Trim44-201;Trim44-203,Trim44;Trim44,0;100084,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,80985,ENSMUSG00000027189,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11995,cg00049667,0.000000637,0.0000062,0.102613595,0.918335998,gain,ns,0.0000203,0.0000105,1.930293269,0.054482487,pos,ns,0.006111322,0.003087821,1.979170026,0.048681393,pos,ns,1.312637002,-0.000297261,0.00010619,-2.7993371,0.005441806,neg,ns,0.096747234,Adrb2,Adrb2_Exon,18,62179565,62179614,62179565,62179566,50,-,CGCTCGAACTTGGCAATGGCTGTGATGACCAGCACATTGCCAAACACGAT,Promoter (<=1kb),18,62177816,62179959,2144,2,Adrb2-201,345,Adrb2-201,Adrb2,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,11555,ENSMUSG00000045730,conserved gene and region,18,62179489,62180164,676,*,676,53,0.653846154,0.733939692,0.078402367,1.22E-34,CpGisland,TRUE,U1,Pr-A
16912,cg07447947,-0.0000019,0.00000142,-1.342582651,0.180389435,loss,ns,0.00000464,0.0000024,1.930044487,0.054513436,pos,ns,-0.000439521,0.000704496,-0.623880144,0.533165106,neg,ns,0.273138282,0.0000247,0.0000242,1.020848038,0.308122439,pos,ns,0.96493072,Gm49193,Gm49193_Intergenic_downstream,14,87266172,87266221,87266220,87266221,50,+,TGATCTAAATCCAGAGAAAATAGCAGCTATCACAGCTGATGGAGTACCCG,Distal Intergenic,14,87160026,87161841,1816,1,Gm49193-202,106146,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26544,cg20979225,0.00000485,0.00000291,1.666986558,0.096526999,gain,ns,-0.00000954,0.00000494,-1.929925334,0.054528264,neg,ns,-0.001697096,0.001448427,-1.171682364,0.242224335,neg,ns,0.615782227,0.0000412,0.0000498,0.827993199,0.408311321,pos,ns,0.947590071,Casz1,Casz1_Intron,4,148904240,148904289,148904288,148904289,50,+,TCAGCCAAGGGCTGGATCAATCTGGACGTCTTTAGCAATAAAAAATGCCG,"Intron (Casz1-201/Casz1, intron 4 of 15)",4,148804429,148945129,140701,1,Casz1-201,99811,Casz1-201;Casz1-202;Casz1-206,Casz1;Casz1;Casz1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,94,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10152,cg23242411,0.00018683,0.000018,10.37043475,7.92E-22,gain,yes,-0.0000591,0.0000306,-1.929820838,0.054541271,neg,ns,0.029020457,0.008966579,3.236513878,0.001340887,pos,ns,2.872607918,-0.001114228,0.00030836,-3.613401644,0.000352476,neg,ns,0.309981681,Gm28308,Gm28308_Exon,6,52204300,52204349,52204300,52204301,50,-,CGGGCCATTTGGATAGCGACCGCAAAATGAGTTTACAAAATAAGAGCTCA,"Exon (Hoxa5-201/Hoxa5, exon 1 of 2)",6,52163359,52213339,49981,2,Gm28308-201,8990,Gm28308-201;Hoxa3-201;Hoxa3-203;Hoxa5-201;Hoxa6-201,Gm28308;Hoxa3;Hoxa3;Hoxa5;Hoxa6,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,30,103,,NA,mapped to different genes,6,52203658,52204321,664,*,664,70,0.680722892,0.922222222,0.105421687,5.32E-55,CpGisland,TRUE,U3,Pr-B
9529,cg00036621,-0.00000649,0.00000803,-0.808394686,0.41948334,loss,ns,0.0000263,0.0000136,1.929762541,0.054548528,pos,ns,0.012539303,0.003995575,3.138297923,0.001862732,pos,ns,2.729849539,-0.000354481,0.000137407,-2.579778287,0.010346578,neg,ns,0.8967473,Naa30,Naa30_Exon,14,49178096,49178145,49178144,49178145,50,-,GGATATGCACAAAAAGATGTTCCGCAGAGGTTATATAGCCATGTTAGCCG,"Exon (Naa30-205/Naa30, exon 3 of 5)",14,49172226,49190885,18660,1,Naa30-205,5870,Naa30-205;Naa30-201;Naa30-203;Naa30-204;Naa30-202,Naa30;Naa30;Naa30;Naa30;Naa30,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,7,70646,ENSMUSG00000036282,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27413,cg02903853,-0.00000311,0.00000204,-1.523298105,0.128703579,loss,ns,-0.00000668,0.00000346,-1.929726799,0.054552978,neg,ns,-0.000911903,0.001014742,-0.898654738,0.369534055,neg,ns,0.432345532,-0.0000379,0.0000349,-1.085040684,0.278746714,neg,ns,0.958437312,Ddx27,Ddx27_Exon,2,167027712,167027761,167027712,167027713,50,-,CGAATGTGTTCCCACCACCGCCAGACCATGCTCTTCTCGGCCACCATGAC,"Exon (Ddx27-201/Ddx27, exon 10 of 21)",2,167015193,167034947,19755,1,Ddx27-201,12519,Ddx27-201;Ddx27-206;Ddx27-205;Ddx27-202;Ddx27-204,Ddx27;Ddx27;Ddx27;Ddx27;Ddx27,0;12402;12402;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,228889,ENSMUSG00000017999,conserved gene and region,2,167027530,167027787,258,*,258,14,0.589147287,0.626322178,0.054263566,0.00000017,CpGisland,TRUE,U10,Tr-S
21645,cg17109064,0.0000864,0.0000157,5.512254842,7.47E-08,gain,yes,-0.0000514,0.0000266,-1.929499282,0.054581312,neg,ns,0.027285852,0.007797619,3.499254482,0.000534912,pos,ns,3.271717483,-0.000754763,0.000268159,-2.814604553,0.005196112,neg,ns,0.370481566,Zfhx3,Zfhx3_Intron,8,108731828,108731877,108731876,108731877,50,+,GGCATTGCGTGAGTCAATAGAGCTGTAGACACTTTGCCAATATAACCCCG,"Intron (Zfhx3-204/Zfhx3, intron 7 of 15)",8,107942644,108961630,1018987,1,Zfhx3-204,789184,Zfhx3-204;Zfhx3-202;Zfhx3-201,Zfhx3;Zfhx3;Zfhx3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,114,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12925,cg03924819,-0.00000292,0.00000171,-1.70710959,0.088802989,loss,ns,0.0000056,0.0000029,1.929323251,0.054603242,pos,ns,0.000679034,0.000850339,0.798544083,0.425166159,pos,ns,0.37144131,-0.00000692,0.0000292,-0.236642745,0.813090247,neg,ns,0.031240189,Arid5b,Arid5b_Promoter,10,68279693,68279742,68279741,68279742,50,-,ATGGACGCCAAGGGCGCTCTCAAATGATAATGTGTTTATATAACCCAGCG,Promoter (1-2kb),10,68092520,68278740,186221,2,Arid5b-204,-1002,Arid5b-204;Arid5b-201;Arid5b-202,Arid5b;Arid5b;Arid5b,0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,16,33,71371,ENSMUSG00000019947,conserved gene and region,10,68279593,68279827,235,*,235,14,0.50212766,0.955007257,0.059574468,5.38E-08,CpGisland,TRUE,U1,Pr-A
1540,cg20199032,-0.00000264,0.00000827,-0.31893032,0.749994138,loss,ns,-0.0000271,0.0000141,-1.92929787,0.054606405,neg,ns,-0.002225798,0.004116345,-0.54072184,0.589087623,neg,ns,0.229820102,-0.000046,0.000141561,-0.324679481,0.745642652,neg,ns,0.736337737,Gm50093,Gm50093_Intron,18,13518393,13518442,13518393,13518394,50,+,CGCTCCTGGCATGAGTAATTTGTGCACCTGCATTTTTAAAATGTTTCAAA,"Intron (AC103362.1-201/AC103362.1-201, intron 5 of 5)",18,13372089,13372552,464,1,Gm50093-201,146304,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,11,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5796,cg02989879,-0.0000107,0.0000055,-1.94370131,0.052836164,loss,ns,0.000018,0.00000934,1.929259886,0.054611138,pos,ns,-0.003063324,0.002735836,-1.119703084,0.263707086,neg,ns,0.5788782,0.000046,0.0000941,0.488725887,0.625381333,pos,ns,0.822894534,Dusp4,Dusp4_Exon,8,34817294,34817343,34817342,34817343,50,+,CCACAAGGCCGACATCAGCTCCTGGTTCATGGAAGCCATAGAGTACATCG,"Exon (Dusp4-201/Dusp4, exon 3 of 4)",8,34807297,34819894,12598,1,Dusp4-201,9997,Dusp4-201,Dusp4,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,319520,ENSMUSG00000031530,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25186,cg06818307,0.0000968,0.0000123,7.871558431,5.92E-14,gain,yes,-0.0000403,0.0000209,-1.929203593,0.054618153,neg,ns,0.012761693,0.006123108,2.084185509,0.037961797,pos,ns,1.42065324,-0.000110465,0.000210573,-0.524590376,0.600242896,neg,ns,0.112537398,Bmp2,Bmp2_Exon,2,133554434,133554483,133554434,133554435,50,+,CGGGACCCGCTGTCTTCTAGCGTTGCTGCTTCCCCAGGTCCTCCTGGGCG,"Exon (Bmp2-201/Bmp2, exon 2 of 3)",2,133552159,133562885,10727,1,Bmp2-201,2275,Bmp2-201,Bmp2,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,4,12156,ENSMUSG00000027358,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
4979,cg21631452,0.00001,0.0000019,5.259905384,0.000000269,gain,yes,-0.00000624,0.00000324,-1.929164614,0.054623012,neg,ns,0.001848497,0.000948034,1.949820831,0.052098771,pos,ns,1.283172518,-0.000019,0.0000326,-0.583327665,0.560096873,neg,ns,0.039251373,Prdm12,Prdm12_Intron,2,31641121,31641170,31641169,31641170,50,-,CTTCCAGGGCTAATGAATTTAGAATTAGCAATTTCTTTCGAATGGAGCCG,"Intron (Prdm12-201/Prdm12, intron 1 of 4)",2,31640037,31655795,15759,1,Prdm12-201,1084,Prdm12-201,Prdm12,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,10,381359,ENSMUSG00000079466,conserved gene and region,2,31641159,31641262,104,*,104,12,0.586538462,1.386666667,0.115384615,3.14E-10,CpGisland,TRUE,U13,Hc-P
2788,cg02398016,-0.0000367,0.00000782,-4.702360694,0.00000388,loss,ns,0.0000256,0.0000133,1.929164122,0.054623073,pos,ns,-0.004362174,0.003889711,-1.121464799,0.262958012,neg,ns,0.580113592,-0.000115625,0.000133767,-0.864380822,0.388047065,neg,ns,0.597550934,Klhl14,Klhl14_Intergenic_upstream,18,21729110,21729159,21729110,21729111,50,-,CGGCTCTCCCAGGCATAATTTTTGGTGCTGGTTGCAGCAGGGAGCGTATG,Distal Intergenic,18,21550379,21654718,104340,2,Klhl14-202,-74441,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,38,225266,ENSMUSG00000042514,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11885,cg13397744,-0.00000252,0.0000012,-2.106432857,0.035970271,loss,ns,0.00000392,0.00000203,1.929096166,0.054631543,pos,ns,0.002144681,0.000595748,3.599978173,0.000370404,pos,ns,3.43132412,-0.0000375,0.0000205,-1.83227906,0.067869034,neg,ns,0.035074288,Kpna3,Kpna3_Exon,14,61439733,61439782,61439733,61439734,50,+,CGGCCCTTGTTCTTGAAGCTCTTGATGCGGTGGTTCTCCAAGCTGGGGTT,Promoter (<=1kb),14,61365211,61439874,74664,2,Kpna3-201,92,Kpna3-201,Kpna3,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,16648,ENSMUSG00000021929,conserved gene and region,14,61439275,61440356,1082,*,1082,142,0.742144177,0.953445943,0.131238447,3.06E-126,CpGisland,TRUE,U1,Pr-A
4657,cg16474533,0.0000157,0.00000882,1.782737893,0.075607463,gain,ns,-0.0000289,0.000015,-1.928921439,0.054653328,neg,ns,0.017002045,0.004389011,3.873776088,0.000130765,pos,ns,3.88350875,-0.001033553,0.000150938,-6.847544793,4.04E-11,neg,yes,0.568330183,Cacna1d,Cacna1d_threeUTR,14,30066122,30066171,30066170,30066171,50,+,ATCAGGAAAGTGGCATAGAACTTCCCCACGGTTACCTCATCATCTAAACG,3' UTR,14,30039939,30082758,42820,2,Cacna1d-212,16587,Cacna1d-212;Cacna1d-202;Cacna1d-201;Cacna1d-208;Cacna1d-209;Cacna1d-214;Cacna1d-204;Cacna1d-207;Cacna1d-218;Cacna1d-216,Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,13,26,12289,ENSMUSG00000015968,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16726,cg08388213,-0.00000651,0.00000381,-1.710266504,0.088217124,loss,ns,0.0000125,0.00000646,1.928649747,0.054687216,pos,ns,0.004914574,0.00189385,2.595017346,0.009908364,pos,ns,2.003998056,-0.0001427,0.0000651,-2.191021815,0.029194318,neg,ns,0.915851299,Tbc1d22a,Tbc1d22a_Intron,15,86277261,86277310,86277309,86277310,50,+,TATCATATCTATCATTTAATTGTTCATGCAAGCCAGCTCTTCATGTAGCG,"Intron (Tbc1d22a-201/Tbc1d22a, intron 4 of 12)",15,86214459,86498503,284045,1,Tbc1d22a-201,62802,Tbc1d22a-201;Tbc1d22a-202,Tbc1d22a;Tbc1d22a,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,3,223754,ENSMUSG00000051864,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11482,cg00470976,0.0000126,0.00000609,2.07414245,0.038891253,gain,ns,0.00002,0.0000103,1.92855381,0.054699187,pos,ns,0.001935273,0.003032075,0.638266748,0.523771271,pos,ns,0.280858326,-0.000148651,0.000104273,-1.425597932,0.154990557,neg,ns,0.685894067,Gm14645,Gm14645_Intergenic_upstream,X,58469942,58469991,58469942,58469943,50,-,CGTAGCTGTGATGAAGGCTTAGTGCTAAAATGTTAGCTATTACTTTGGCG,Distal Intergenic,20,58427659,58428075,417,2,Gm14645-201,-41916,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14225,cg05736507,-0.0000023,0.00000409,-0.561119332,0.57512156,loss,ns,0.0000134,0.00000695,1.928518689,0.05470357,pos,ns,0.002655384,0.002036369,1.303979617,0.193207951,pos,ns,0.713975005,-0.0000888,0.00007,-1.268558584,0.205550304,neg,ns,0.508361407,Onecut1,Onecut1_Exon,9,74854947,74854996,74854947,74854948,50,-,CGCAGCTATTCATCTCTGCCATGCAAGACACGGAATAATTTTCGCATTAC,Promoter (6-7kb),9,74861921,74891781,29861,1,Onecut1-201,-6974,NA,NA,NA,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,16,28,15379,ENSMUSG00000043013,conserved gene but different region,9,74854915,74854990,76,*,76,8,0.513157895,1.6,0.105263158,0.00000148,CpGisland,TRUE,U13,Hc-P
13211,cg07287059,0.0000188,0.00000234,8.02724025,2.09E-14,gain,yes,-0.00000768,0.00000398,-1.928415281,0.054716476,neg,ns,0.002310519,0.001166374,1.980942241,0.048481239,pos,ns,1.314426285,-0.000042,0.0000401,-1.048100221,0.295408891,neg,ns,0.052356574,Foxb1,Foxb1_Promoter,9,69766348,69766397,69766396,69766397,50,+,AAGCAGAACAAAGGTTGGACTAAGCCAAATTGCATTGCACTTGTGAACCG,Promoter (5-6kb),9,69757710,69760940,3231,2,Foxb1-201,-5408,NA,NA,NA,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,8,21,64290,ENSMUSG00000059246,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
26095,cg22457995,-0.0000139,0.00000524,-2.65695986,0.008293257,loss,ns,-0.0000172,0.00000891,-1.928392465,0.054719324,neg,ns,-0.009233448,0.002608904,-3.539205816,0.00046282,neg,ns,3.334588144,0.00018809,0.0000897,2.096414082,0.036855768,pos,ns,0.859974602,Sox5,Sox5_Intron,6,143862796,143862845,143862844,143862845,50,-,GGAGGGACTGTGAGACAGAAGGCAGGCACTAATCACACATAAAATGACCG,"Intron (Sox5-201/Sox5, intron 10 of 14)",6,143828425,144209480,381056,2,Sox5-201,346635,Sox5-201;Sox5-214;Sox5-205;Sox5-204;Sox5-202;Sox5-203;Sox5-209;Sox5-211;Sox5-206,Sox5;Sox5;Sox5;Sox5;Sox5;Sox5;Sox5;Sox5;Sox5,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,71,20678,ENSMUSG00000041540,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16223,cg17096964,-0.0000169,0.0000104,-1.631171313,0.103869643,loss,ns,0.0000339,0.0000176,1.928169195,0.054747199,pos,ns,-0.004629006,0.005153322,-0.898256573,0.369745906,neg,ns,0.432096626,-0.0000178,0.000177222,-0.10062333,0.919914521,neg,ns,0.492082334,Bnc2,Bnc2_Intron,4,84615953,84616002,84616001,84616002,50,+,TCTGATGAAATTGGAAGCACAGAATTTTCTCCAGTTTGCCCTGGCACTCG,"Intron (Bnc2-201/Bnc2, intron 1 of 7)",4,84275095,84675034,399940,2,Bnc2-201,59032,Bnc2-201;Bnc2-202;Bnc2-214;Bnc2-215;Bnc2-206;Bnc2-211;Bnc2-217;Bnc2-207;Bnc2-203;Bnc2-209;Bnc2-204;Bnc2-210,Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,91,242509,ENSMUSG00000028487,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18348,cg04998737,0.0000327,0.00000423,7.732086036,1.49E-13,gain,yes,0.0000139,0.00000719,1.928012177,0.05476681,pos,ns,0.002121224,0.002106223,1.007121789,0.314661704,pos,ns,0.50215611,0.000171113,0.0000724,2.362368705,0.018776138,pos,ns,0.053186539,Otp,Otp_Promoter,13,94869015,94869064,94869063,94869064,50,+,GCTCTTCAATGCTGATTATTTTATTTGCAGCCATAATTATATTTCTTTCG,Promoter (6-7kb),13,94875602,94885130,9529,1,Otp-201,-6538,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,27,34,18420,ENSMUSG00000021685,conserved gene and region,13,94869063,94869234,172,*,172,30,0.819767442,1.155913979,0.174418605,1.73E-31,CpGisland,TRUE,U3,Pr-B
19225,cg12243793,-0.00000365,0.00000468,-0.779904202,0.436042302,loss,ns,-0.0000153,0.00000795,-1.927968209,0.054772303,neg,ns,0.000466968,0.002329845,0.200428653,0.841276778,pos,ns,0.075061099,-0.000183151,0.0000801,-2.285870611,0.022936376,neg,ns,0.830302693,Msl1,Msl1_Exon,11,98799196,98799245,98799196,98799197,50,+,CGAGAAAGAAAGGCACAAGCTGTTTCAGGGCTATGAAACTGAAGAGAGAG,"Exon (Msl1-201/Msl1, exon 2 of 9)",11,98795516,98807859,12344,1,Msl1-201,3680,Msl1-201;Msl1-203;Msl1-204;Msl1-202;Msl1-205,Msl1;Msl1;Msl1;Msl1;Msl1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,13,74026,ENSMUSG00000052915,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2228,cg09713244,-0.000000716,0.000000689,-1.038972983,0.29962698,loss,ns,0.00000226,0.00000117,1.927780075,0.05479581,pos,ns,0.000688866,0.000343019,2.008242024,0.045484714,pos,ns,1.342134531,-0.0000279,0.0000118,-2.361091322,0.01883976,neg,ns,0.978452702,Gm30341,Gm30341_Intergenic_upstream,3,18714034,18714083,18714082,18714083,50,+,TAAATGCAGCGATCAGCAGTAAGGATTTTGAAGCTGTTTTAGTAGTTCCG,Distal Intergenic,3,18753077,18753365,289,1,Gm30341-201,-38994,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,17,23,102632201,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9071,cg27563198,-0.000000354,0.00000168,-0.211014552,0.83301456,loss,ns,0.00000549,0.00000285,1.927704115,0.054805303,pos,ns,0.001114341,0.000834495,1.335347615,0.182742278,pos,ns,0.738160966,-0.0000285,0.0000287,-0.994206122,0.32089792,neg,ns,0.960217479,Nova1,Nova1_Intron,12,46766405,46766454,46766405,46766406,50,-,CGCTGTTAAACAGTTGCTGCGTTCCACCTCAGAAGTGGCTGCAATTCGGT,"Intron (Nova1-201/Nova1, intron 2 of 4)",12,46694517,46818929,124413,2,Nova1-201,52475,Nova1-201;Nova1-203;Nova1-202;Nova1-205,Nova1;Nova1;Nova1;Nova1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,24,664883,ENSMUSG00000021047,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10358,cg19462453,0.0000161,0.00000348,4.613650651,0.0000058,gain,ns,-0.0000114,0.00000591,-1.927699581,0.05480587,neg,ns,0.002358853,0.001732708,1.361367937,0.174386106,pos,ns,0.758488119,-0.0000965,0.0000596,-1.619729354,0.106307229,neg,ns,0.923871026,Snx2,Snx2_Exon,18,53210398,53210447,53210398,53210399,50,+,CGACGCTGTCAACAAAATGACAATCAAGATGAATGAATCGGATGCAGTAA,"Exon (Snx2-201/Snx2, exon 9 of 15)",18,53176316,53220865,44550,1,Snx2-201,34082,Snx2-201;Snx2-203,Snx2;Snx2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,67804,ENSMUSG00000034484,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16635,cg24976431,0.0000255,0.0000256,0.995855538,0.320097025,gain,ns,-0.0000838,0.0000435,-1.927672303,0.05480928,neg,ns,-0.028155215,0.012741446,-2.209734738,0.027854142,neg,ns,1.55511021,0.000523024,0.000438177,1.193636635,0.233532776,pos,ns,0.627257412,Bcas3,Bcas3_Intron,11,85713739,85713788,85713739,85713740,50,+,CGCCCATGGGCCAGCTTGGCACGGCTGCTTTCACATAACCCAGGGCTCCA,"Intron (Bcas3-205/Bcas3, intron 24 of 27)",11,85353167,85826058,472892,1,Bcas3-205,360572,Bcas3-205;Bcas3-206;Bcas3-201;Bcas3-202;Bcas3-216;Bcas3-212;Bcas3-203;Bcas3-207,Bcas3;Bcas3;Bcas3;Bcas3;Bcas3;Bcas3;Bcas3;Bcas3,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,24,192197,ENSMUSG00000059439,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
7799,cg12883359,0.00000517,0.0000038,1.360499436,0.174660312,gain,ns,-0.0000124,0.00000645,-1.927471495,0.054834385,neg,ns,-0.001645922,0.001889537,-0.871071792,0.384389017,neg,ns,0.415229029,-0.00000772,0.000065,-0.118749276,0.905550907,neg,ns,0.927261681,Arhgap15,Arhgap15_Intron,2,44341464,44341513,44341512,44341513,50,+,AGCTCTGGACGGCACATGTTCAAGTGACGAAAAATATTTCACATGTAACG,"Intron (Arhgap15-203/Arhgap15, intron 13 of 14)",2,43748824,44395953,647130,1,Arhgap15-203,592640,Arhgap15-203;Arhgap15-202;Arhgap15-201,Arhgap15;Arhgap15;Arhgap15,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,72,78,76117,ENSMUSG00000049744,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3900,cg13166871,-0.000000629,0.000000816,-0.770988383,0.441301044,loss,ns,0.00000267,0.00000139,1.92733722,0.054851177,pos,ns,0.000814317,0.00040601,2.005658205,0.045761438,pos,ns,1.33950034,-0.0000238,0.000014,-1.706632892,0.088891729,neg,ns,0.974253227,5730522E02Rik,5730522E02Rik_Intron,11,25704604,25704653,25704652,25704653,50,+,TGCAATGACAATTAAATTGTAACTGACCTACATGTTACCGTCATTACGCG,"Intron (5730522E02Rik-202/5730522E02Rik, intron 2 of 5)",11,25617668,26210569,592902,2,5730522E02Rik-202,505916,5730522E02Rik-202;5730522E02Rik-201;5730522E02Rik-208,5730522E02Rik;5730522E02Rik;5730522E02Rik,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,90,70626,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2944,cg21938659,-0.00000265,0.00000331,-0.801632526,0.42337959,loss,ns,-0.0000108,0.00000562,-1.927216382,0.054866293,neg,ns,-0.004006198,0.001646089,-2.433768393,0.015507195,neg,ns,1.809466748,-0.0000167,0.0000566,-0.294621415,0.768480297,neg,ns,0.909212213,Gm11880,Gm11880_Intergenic_downstream,4,22103122,22103171,22103170,22103171,50,+,GAGGTTCTGTATATCATTCAAAGACCATCTGTCGTGCAATTCCTGTAGCG,Distal Intergenic,4,22117134,22117532,399,2,Gm11880-201,14361,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,11,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20000,cg14883833,0.00000194,0.00000284,0.682441611,0.49546937,gain,ns,0.00000929,0.00000482,1.927181658,0.054870637,pos,ns,0.002098317,0.001411655,1.486423956,0.138183326,pos,ns,0.859544357,-0.0000704,0.0000485,-1.450150683,0.14802749,neg,ns,0.932729927,Ephb1,Ephb1_Intron,9,102033264,102033313,102033264,102033265,50,-,CGCTCAGAGAAGATGTTAATTTTCTGAAATTAAACACTTAGCTTGATTAC,"Intron (Ephb1-201/Ephb1, intron 5 of 15)",9,101922128,102354693,432566,2,Ephb1-201,321380,Ephb1-201;Ephb1-202,Ephb1;Ephb1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,7,270190,ENSMUSG00000032537,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3051,cg09127786,0.0000247,0.00000317,7.798193955,9.64E-14,gain,yes,-0.0000104,0.00000538,-1.927166853,0.05487249,neg,ns,0.003549089,0.001575981,2.251986666,0.025022741,pos,ns,1.601665123,-0.0000233,0.0000542,-0.429301037,0.668002368,neg,ns,0.07972054,Pou3f2,Pou3f2_Exon,4,22486994,22487043,22487042,22487043,50,-,TGGGGCATTTGAGGAAATGGCTCTCCAGAGCCCCCTTGACGCTCACCTCG,"Exon (Pou3f2-201/Pou3f2, exon 1 of 1)",4,22482780,22488366,5587,2,Pou3f2-201,1323,Pou3f2-201,Pou3f2,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,18,18992,ENSMUSG00000095139,conserved gene and region,4,22487033,22487110,78,*,78,8,0.628205128,1.04,0.102564103,0.00000181,CpGisland,TRUE,U13,Hc-P
4337,cg02474076,-0.0000153,0.00000559,-2.730645763,0.006682768,loss,ns,-0.0000183,0.0000095,-1.926673858,0.054934201,neg,ns,-0.000664446,0.002784074,-0.238659468,0.811527338,neg,ns,0.090696845,-0.0000634,0.0000957,-0.661954806,0.508491948,neg,ns,0.88097462,Gcc1,Gcc1_Exon,6,28419144,28419193,28419192,28419193,50,+,GCTCCTTCAGCTTCTGAATGGCCAGCTGGTCCTTCTGCTTGGCTTTCTCG,"Exon (Gcc1-202/Gcc1, exon 2 of 2)",6,28416091,28421724,5634,2,Gcc1-202,2531,Arf5-201;Arf5-202;Arf5-203;Gcc1-202;Gcc1-201;Gcc1-203;Gcc1-204,Arf5;Arf5;Arf5;Gcc1;Gcc1;Gcc1;Gcc1,0;0;0;0;0;1665;4960,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,74375,ENSMUSG00000029708,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23565,cg10866847,-0.00003,0.00000573,-5.233114978,0.000000308,loss,yes,-0.0000187,0.00000973,-1.926635086,0.054939057,neg,ns,-0.001226095,0.002849672,-0.430258371,0.667306662,neg,ns,0.17567454,-0.000357185,0.000098,-3.644746542,0.000313738,neg,ns,0.835039557,Ctdspl,Ctdspl_Exon,9,119031794,119031843,119031794,119031795,50,+,CGAAGGCCGTGGCCTCGTTCAAGTAATCCAGGATAGGCTGTGCAGGTCCC,"Exon (Mir26a-1-201/Mir26a-1-201, exon 1 of 1)",9,118926453,119043998,117546,1,Ctdspl-201,105341,Ctdspl-201;Ctdspl-202;Ctdspl-204;Ctdspl-203,Ctdspl;Ctdspl;Ctdspl;Ctdspl,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,7,69274,ENSMUSG00000047409,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17591,cg07065655,0.0000424,0.0000156,2.724589934,0.00680359,gain,ns,-0.0000509,0.0000264,-1.926609574,0.054942252,neg,ns,0.016729012,0.007743045,2.160521107,0.031498249,pos,ns,1.501713593,-0.000584041,0.000266283,-2.193311849,0.029027372,neg,ns,0.352436478,Hdac11,Hdac11_Exon,6,91157461,91157510,91157461,91157462,50,+,CGCTACAACATCACCTTCATGGGCCTGGAGAAGCTGCATCCCTTTGATGC,Promoter (<=1kb),6,91156665,91174692,18028,1,Hdac11-201,796,Hdac11-201;Hdac11-205;Hdac11-204;Hdac11-202;Hdac11-206,Hdac11;Hdac11;Hdac11;Hdac11;Hdac11,0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,232232,ENSMUSG00000034245,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12942,cg17660459,0.0000838,0.0000098,8.550134997,5.71E-16,gain,yes,-0.0000321,0.0000167,-1.926575871,0.054946474,neg,ns,0.011203327,0.004879473,2.296011912,0.022342211,pos,ns,1.650873858,-0.000380812,0.000167805,-2.269374286,0.023932354,neg,ns,0.172688406,Iqschfp,Iqschfp_fiveUTR,3,68572289,68572338,68572337,68572338,50,+,CCAGACTGATCCTTTTCTTTGTGCCTATAATATAATTGGCTGATTGTGCG,5' UTR,3,67892232,68626466,734235,1,Iqschfp-201,680057,Iqschfp-201;Schip1-201;Schip1-202;Schip1-205;Schip1-208;Schip1-206;Schip1-203,Iqschfp;Schip1;Schip1;Schip1;Schip1;Schip1;Schip1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,3,100505386,ENSMUSG00000102422,conserved gene and region,3,68572337,68572616,280,*,280,21,0.675,0.661566157,0.075,1.10E-13,CpGisland,TRUE,U9,En-Pp
12312,cg11629501,0.00000433,0.00000332,1.305240706,0.192778838,gain,ns,-0.0000109,0.00000563,-1.926569019,0.054947332,neg,ns,0.000442964,0.001650208,0.268429184,0.788547517,pos,ns,0.103172131,-0.000170466,0.0000568,-3.003785059,0.002883726,neg,ns,0.909217122,Pinx1,Pinx1_Intron,14,63883817,63883866,63883865,63883866,50,-,TTTTGGTCACTCCACAGGGCTAAAATAGCCGAGTTGGCTTTAATGTGTCG,"Intron (Pinx1-201/Pinx1, intron 6 of 6)",14,63860364,63919855,59492,1,Pinx1-201,23453,Pinx1-201,Pinx1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,72400,ENSMUSG00000021958,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10691,cg06055229,0.0000669,0.00000965,6.930713548,2.43E-11,gain,yes,-0.0000316,0.0000164,-1.926506159,0.054955206,neg,ns,0.007145005,0.004804019,1.487297314,0.137952714,pos,ns,0.860269752,-0.000505003,0.00016521,-3.056734497,0.00243237,neg,ns,0.085537062,Zfp608,Zfp608_Intron,18,54985900,54985949,54985900,54985901,50,+,CGATTGCCAGCTAAACAAAATTGTTGAATGTGAACATTTGGCTGGAAGAT,"Intron (Zfp608-201/Zfp608, intron 2 of 9)",18,54888048,54990166,102119,2,Zfp608-201,4217,Zfp608-201;Zfp608-203,Zfp608;Zfp608,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,32,269023,ENSMUSG00000052713,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16688,cg08463492,0.0000701,0.00000803,8.733774659,1.56E-16,gain,yes,-0.0000263,0.0000136,-1.926374668,0.054971681,neg,ns,0.003127264,0.003995564,0.782683978,0.434410184,pos,ns,0.362100002,-0.000785776,0.000137407,-5.718595679,2.53E-08,neg,yes,0.574323168,Stap1,Stap1_Exon,5,86096500,86096549,86096548,86096549,50,+,ACACTCCCAAACCTTTTCAGTGTCATTGATTATTTTGTGAAGGAGACTCG,"Exon (Stap1-206/Stap1, exon 8 of 9)",5,86071746,86106125,34380,1,Stap1-206,24754,Stap1-206;Stap1-202;Stap1-201;Stap1-204,Stap1;Stap1;Stap1;Stap1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,56792,ENSMUSG00000029254,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7878,cg05266211,-0.0000319,0.0000129,-2.480793882,0.013639305,loss,ns,0.0000421,0.0000218,1.926341909,0.054975786,pos,ns,0.004828768,0.006397474,0.754792841,0.450946314,pos,ns,0.345875158,-0.000381856,0.000220009,-1.73563976,0.08362123,neg,ns,0.689116089,Nrcam,Nrcam_Exon,12,44584876,44584925,44584924,44584925,50,+,AGCTTCTTTGGGTTAAAGGGTCTAATGCCAGGAACAGCATACAAAGTTCG,"Exon (Nrcam-201/Nrcam, exon 28 of 31)",12,44328886,44600760,271875,1,Nrcam-202,255990,Nrcam-202;Nrcam-201;Nrcam-215;Nrcam-214;Nrcam-203;Nrcam-205,Nrcam;Nrcam;Nrcam;Nrcam;Nrcam;Nrcam,0;0;0;0;0;-18,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,3,319504,ENSMUSG00000020598,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3573,cg17445756,-0.0000234,0.00000615,-3.806944882,0.00016956,loss,ns,0.0000201,0.0000105,1.92613047,0.055002288,pos,ns,0.007110769,0.003062351,2.321997033,0.020880756,pos,ns,1.680253782,-0.000281639,0.000105314,-2.674283743,0.00788605,neg,ns,0.867877858,Rps24,Rps24_Intergenic_downstream,14,24565337,24565386,24565385,24565386,50,-,GGCAGTATCACAGTATTGTTTTATTGGCAATTAGATTTCAAACTGGCACG,Distal Intergenic,14,24491149,24491989,841,1,Rps24-209,74237,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,12,20088,ENSMUSG00000025290,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8413,cg05962837,0.0000149,0.0000126,1.179026602,0.239291701,gain,ns,-0.0000413,0.0000214,-1.926127213,0.055002696,neg,ns,-0.005004579,0.00628346,-0.796468706,0.426369182,neg,ns,0.370214193,0.00000724,0.000216088,0.033496316,0.97330036,pos,ns,0.469780055,Zeb2,Zeb2_Intron,2,45103285,45103334,45103333,45103334,50,+,TCTTTTCATCTTGGCTTTCTGTGGCAGAATGCAAATGGAGCCTGCCGGCG,"Intron (Zeb2-212/Zeb2, intron 3 of 10)",2,44983632,45117395,133764,2,Zeb2-212,14061,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219;Zeb2-211;Zeb2-210;Zeb2-205;Zeb2-223;Zeb2-217;Zeb2-225;Zeb2-204,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;6742;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1835,cg21836417,-0.00000672,0.00000477,-1.409677679,0.15963731,loss,ns,0.0000156,0.0000081,1.925899063,0.055031305,pos,ns,0.004233663,0.002373631,1.78362352,0.075463028,pos,ns,1.122265773,-0.000158334,0.0000816,-1.939676934,0.053325856,neg,ns,0.924283762,Foxp2,Foxp2_Intergenic_downstream,6,15486645,15486694,15486693,15486694,50,+,AAATTTTCAAGGGCTTCAACCCTCAATTTTAATAAATTTCATGGAAATCG,Distal Intergenic,6,15376689,15439048,62360,1,Foxp2-206,109956,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,65,114142,ENSMUSG00000029563,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6338,cg22443103,-0.00000727,0.00000953,-0.76267736,0.446235776,loss,ns,0.0000312,0.0000162,1.925856198,0.055036681,pos,ns,0.000336739,0.004741902,0.071013433,0.943432854,pos,ns,0.025289004,0.0000106,0.000163074,0.065161555,0.948087371,pos,ns,0.812781519,Pknox2,Pknox2_Intron,9,36934323,36934372,36934323,36934324,50,+,CGGGGTTGTAAAAAATACAGATGCCAAATTAACTGGCTGTGGCACTTGGC,"Intron (Pknox2-207/Pknox2, intron 4 of 10)",9,36890982,37083309,192328,2,Pknox2-207,148937,Pknox2-207;Pknox2-201;Pknox2-202;Pknox2-203;Pknox2-206;Pknox2-204;Pknox2-205;Pknox2-208;Pknox2-210;Pknox2-209,Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,47,208076,ENSMUSG00000035934,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5834,cg24618268,0.00000716,0.00000473,1.514554032,0.130904285,gain,ns,-0.0000155,0.00000803,-1.925663234,0.055060889,neg,ns,-0.008694371,0.002352591,-3.695658606,0.000259235,neg,ns,3.586307086,0.000310254,0.0000809,3.834775519,0.00015224,pos,ns,0.928754899,Msantd1,Msantd1_fiveUTR,5,34917498,34917547,34917546,34917547,50,+,AAGCTTTTAACTAAATTCCTGCCTGTCAGATGTAGGCCCCATTTTGAGCG,Promoter (<=1kb),5,34917539,34923690,6152,1,Msantd1-203,0,Htt-201;Msantd1-202;Msantd1-204;Msantd1-201;Msantd1-203,Htt;Msantd1;Msantd1;Msantd1;Msantd1,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,4,403174,ENSMUSG00000051246,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25645,cg16010809,0.0000185,0.00000536,3.447627325,0.000643689,gain,ns,0.0000175,0.00000911,1.925544516,0.055075787,pos,ns,0.007313353,0.002669564,2.739530633,0.00650901,pos,ns,2.18648509,-0.000139802,0.0000918,-1.522795811,0.128829209,neg,ns,0.898334457,Ptprc,Ptprc_Exon,1,137966483,137966532,137966483,137966484,50,-,CGGTGAGTTTGGAATTAAAATCAAAACCATCGACCGTTGATTGTACCCTA,"Exon (Mir181a-1-201/Mir181a-1-201, exon 1 of 1)",1,138112030,138115474,3445,2,Ptprc-211,148991,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,19264,ENSMUSG00000026395,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12633,cg19876238,-0.00000056,0.00000189,-0.29678987,0.766825693,loss,ns,-0.00000617,0.0000032,-1.925303873,0.055105996,neg,ns,-0.000841822,0.000938929,-0.896576423,0.370640695,neg,ns,0.431046899,0.000025,0.0000323,0.773977695,0.439533828,pos,ns,0.950035568,Selenos,Selenos_threeUTR,7,66089182,66089231,66089182,66089183,50,-,CGTTGAATGATGTCTTCCTTATCAATGGTGAGCCCACCAGTGAGGATTAC,3' UTR,7,66079649,66089405,9757,1,Selenos-201,9533,Selenos-201;Selenos-203;Selenos-205;Selenos-202;Selenos-204,Selenos;Selenos;Selenos;Selenos;Selenos,0;9505;0;9495;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,threeUTR,1,1,109815,ENSMUSG00000075701,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12357,cg06757784,0.00000152,0.000000839,1.81746317,0.070111517,gain,ns,-0.00000274,0.00000142,-1.925024276,0.055141113,neg,ns,-0.000114123,0.000417467,-0.273369403,0.784751305,neg,ns,0.105267954,-0.0000191,0.0000144,-1.330595294,0.18430013,neg,ns,0.017846533,Smad6,Smad6_fiveUTR,9,64022011,64022060,64022011,64022012,50,+,CGGAGGAGCGCCGCGGAGTCATTGGCTGCCTCCCATCATATGCCAGTCTA,Promoter (<=1kb),9,63953076,64022059,68984,2,Smad6-201,0,Smad6-201;Smad6-203,Smad6;Smad6,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,9,19,17130,ENSMUSG00000036867,conserved gene and region,9,64021777,64022025,249,*,249,28,0.710843374,0.91833509,0.112449799,3.74E-23,CpGisland,TRUE,NA,NRS
16993,cg10193716,-0.0000269,0.00000757,-3.549674271,0.000445495,loss,ns,0.0000248,0.0000129,1.924893622,0.055157529,pos,ns,0.013527176,0.003770141,3.587976266,0.000387155,pos,ns,3.412114758,-0.000402333,0.000129655,-3.103107824,0.002091433,neg,ns,0.875446598,Atg16l1,Atg16l1_Exon,1,87781686,87781735,87781734,87781735,50,-,GCAGCTTCAAATGATTTTGCAAGCCGAATCTGGACTGTGGATGATTATCG,"Exon (Atg16l1-201/Atg16l1, exon 12 of 18)",1,87756013,87792428,36416,1,Atg16l1-201,25673,Atg16l1-201;Atg16l1-208;Atg16l1-202;Atg16l1-203;Atg16l1-211;Atg16l1-209;Atg16l1-204,Atg16l1;Atg16l1;Atg16l1;Atg16l1;Atg16l1;Atg16l1;Atg16l1,0;0;0;0;0;6121;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,77040,ENSMUSG00000026289,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11131,cg18403893,0.0000109,0.00000177,6.150207776,2.38E-09,gain,yes,0.00000578,0.000003,1.9243816,0.055221902,pos,ns,0.003223288,0.000880171,3.662116597,0.000294033,pos,ns,3.531603224,-0.0000548,0.0000303,-1.810181796,0.071235794,neg,ns,0.047336039,Pax9,Pax9_Intron,12,56697715,56697764,56697763,56697764,50,-,CAAATGTCACCTAATTGGTTTCGTTCTTATGCTTCACTTCATTTTCCTCG,"Intron (Pax9-203/Pax9, intron 3 of 4)",12,56691767,56712707,20941,1,Pax9-203,5948,Pax9-203;Pax9-201;Pax9-202,Pax9;Pax9;Pax9,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,7,18511,ENSMUSG00000001497,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
503,cg27070923,0.0000457,0.00000651,7.00830022,1.51E-11,gain,yes,-0.0000213,0.0000111,-1.924325521,0.055228956,neg,ns,-0.011547972,0.003242075,-3.561908125,0.00042602,neg,ns,3.370570013,0.00045577,0.000111495,4.087820277,0.0000555,pos,ns,0.880668889,Celf2,Celf2_Intron,2,6608000,6608049,6608048,6608049,50,+,AAACAACAAGACAAAAGGGTTGGACGCTTGTTAAACCAACACAGTCTACG,"Intron (Celf2-201/Celf2, intron 7 of 15)",2,6539694,7396000,856307,2,Celf2-201,787951,Celf2-201;Celf2-202;Celf2-204;Celf2-214;Celf2-206;Celf2-226;Celf2-223;Celf2-224;Celf2-221;Celf2-205;Celf2-211;Celf2-213;Celf2-225;Celf2-228;Celf2-217;Celf2-227;Celf2-212;Celf2-210,Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,24,14007,ENSMUSG00000002107,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15356,cg22075970,0.00017738,0.0000172,10.28930381,1.49E-21,gain,yes,-0.0000564,0.0000293,-1.92421421,0.05524296,neg,ns,-0.010104702,0.008580171,-1.177680731,0.23982723,neg,ns,0.620101509,-0.00010957,0.000295071,-0.371333254,0.710642987,neg,ns,0.350298978,Cdk5r1,Cdk5r1_Exon,11,80477744,80477793,80477744,80477745,50,+,CGCACCTCAACAATGAGAACCTGAAGAAGTCGCTGTCGTGCGCCAACCTG,Promoter (<=1kb),11,80477023,80481184,4162,1,Cdk5r1-201,721,Cdk5r1-201;Cdk5r1-202;Myo1d-201;Psmd11-201;Psmd11-213,Cdk5r1;Cdk5r1;Myo1d;Psmd11;Psmd11,0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,12569,ENSMUSG00000048895,conserved gene and region,11,80476521,80477830,1310,*,1310,168,0.726717557,0.971604153,0.128244275,2.97E-147,CpGisland,TRUE,U4,Pr-F
3486,cg23471370,2.32E-08,0.0000034,0.006810029,0.994570805,gain,ns,-0.0000111,0.00000578,-1.924188192,0.055246234,neg,ns,-0.003793744,0.001692412,-2.241620508,0.025693166,neg,ns,1.59018237,0.0000473,0.0000582,0.813016427,0.416832596,pos,ns,0.898767822,Bcl11a,Bcl11a_Exon,11,24164324,24164373,24164372,24164373,50,-,CAGCACTTCAGCGAGGCCTTCCACCAGGTCCTGGGCGAGAAGCATAAGCG,"Exon (Bcl11a-201/Bcl11a, exon 4 of 5)",11,24078056,24173194,95139,1,Bcl11a-201,86268,Bcl11a-201;Bcl11a-203;Bcl11a-202;Bcl11a-204;Bcl11a-206,Bcl11a;Bcl11a;Bcl11a;Bcl11a;Bcl11a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,51,98,14025,ENSMUSG00000000861,conserved gene but different region,11,24164335,24164500,166,*,166,14,0.620481928,0.882978723,0.084337349,5.77E-10,CpGisland,TRUE,U10,Tr-S
25064,cg09606853,0.0000321,0.00000344,9.31776109,2.29E-18,gain,yes,-0.0000113,0.00000585,-1.924072393,0.055260807,neg,ns,0.002119533,0.001713981,1.236614664,0.21716622,pos,ns,0.663207728,-0.00000941,0.0000589,-0.159695866,0.873224657,neg,ns,0.102111694,Lemd1,Lemd1_Promoter,1,132191194,132191243,132191194,132191195,50,+,CGAAATAGGCTTCATAATTAACTCCCGGAGTCATCCGCAGAGGTTAAAGG,Promoter (<=1kb),1,132191431,132259227,67797,1,Lemd1-205,-188,Gm29695-201;Lemd1-205;Lemd1-201,Gm29695;Lemd1;Lemd1,-214;-188;-212,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,1,213409,ENSMUSG00000079330,mapped to different genes,1,132190290,132191250,961,*,961,119,0.708636837,1.003501229,0.123829344,2.11E-102,CpGisland,TRUE,U3,Pr-B
5497,cg10770652,-0.0000036,0.00000501,-0.717722237,0.473469067,loss,ns,-0.0000164,0.00000851,-1.924024315,0.055266858,neg,ns,-0.004680292,0.002494161,-1.876499406,0.061526016,neg,ns,1.210941208,0.000021,0.0000858,0.245099427,0.806541615,pos,ns,0.852426277,Brd2,Brd2_threeUTR,17,34114405,34114454,34114453,34114454,50,-,CAGTTGGAGAACATAAGCCGTACATCAGCAGCAAACTCCTGTGCATCCCG,3' UTR,17,34112023,34121747,9725,2,Brd2-203,7293,Brd2-203;Brd2-201;Brd2-207;Brd2-202;Brd2-216;Brd2-204;Brd2-205;Brd2-215;Brd2-209;Brd2-210;Brd2-214;Brd2-206;Brd2-208;Brd2-217;Brd2-219,Brd2;Brd2;Brd2;Brd2;Brd2;Brd2;Brd2;Brd2;Brd2;Brd2;Brd2;Brd2;Brd2;Brd2;Brd2,0;0;0;0;-552;-673;0;0;0;0;0;0;1016;1982;2741,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,3,14312,ENSMUSG00000024335,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16828,cg15155511,-0.00000739,0.00000363,-2.037575473,0.04244127,loss,ns,0.0000119,0.00000616,1.923725465,0.055304485,pos,ns,0.004499698,0.001805672,2.491979459,0.013225541,pos,ns,1.87858655,-0.000169517,0.0000621,-2.729875091,0.006698036,neg,ns,0.928542936,Diaph3,Diaph3_Intron,14,86693375,86693424,86693375,86693376,50,-,CGCAACCACCTGGAGAACAAAATCCATCTGTCTGACTGAATCTAGTTGAA,"Intron (Diaph3-201/Diaph3, intron 27 of 27)",14,86655367,87141224,485858,2,Diaph3-201,447800,Diaph3-201;Diaph3-202;Diaph3-207;Diaph3-206;Diaph3-204,Diaph3;Diaph3;Diaph3;Diaph3;Diaph3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,11,56419,ENSMUSG00000022021,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1014,cg14891628,0.0000068,0.00000429,1.586227426,0.113707204,gain,ns,-0.000014,0.00000729,-1.923458246,0.055338148,neg,ns,-0.006252238,0.002135062,-2.928363818,0.003659982,neg,ns,2.436521094,0.0000704,0.0000734,0.959346926,0.338131625,pos,ns,0.877448201,Grm1,Grm1_Exon,10,10719784,10719833,10719832,10719833,50,-,AACCTGGGCTTCCGGGTGCAGATCTTCTTCTTGCTGCCAGCCAGGATGCG,"Exon (Grm1-201/Grm1, exon 8 of 9)",10,10686059,11082356,396298,2,Grm1-201,362523,Grm1-201;Grm1-203;Grm1-202;Grm1-205,Grm1;Grm1;Grm1;Grm1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,7,14816,ENSMUSG00000019828,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24750,cg12642535,-0.00000555,0.00000213,-2.608358906,0.009538434,loss,ns,-0.00000695,0.00000361,-1.923322796,0.055355217,neg,ns,-0.000709398,0.001058271,-0.670336381,0.503142439,neg,ns,0.29830905,0.0000579,0.0000364,1.589692422,0.112923438,pos,ns,0.938054684,R3hdm1,R3hdm1_Exon,1,128202375,128202424,128202375,128202376,50,-,CGTAGCACTGTCTGAGAGGTTTACATTTCTCACAGTGAACCGGTCTCTTT,"Exon (Mir128-1-201/Mir128-1-201, exon 1 of 1)",1,128103324,128237736,134413,1,R3hdm1-201,99051,R3hdm1-201;R3hdm1-213;R3hdm1-214,R3hdm1;R3hdm1;R3hdm1,0;0;-4568,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,7,226412,ENSMUSG00000056211,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22998,cg18086180,-0.0000211,0.00000566,-3.727598106,0.000229736,loss,ns,0.0000185,0.00000962,1.922945067,0.055402843,pos,ns,-0.004623453,0.002818656,-1.640304269,0.101956167,neg,ns,0.991586501,0.000171903,0.0000969,1.773417769,0.077141248,pos,ns,0.85077216,Prcd,Prcd_Intron,11,116662247,116662296,116662295,116662296,50,+,AGGGAGCAGGCTGGCTTTGGTGGGAGCAGATTGTGTTTACACCTTCCCCG,"Intron (Prcd-203/Prcd, intron 5 of 5)",11,116653534,116668092,14559,1,Prcd-203,8713,Prcd-203;Prcd-205;Prcd-201;Prcd-202;Prcd-204,Prcd;Prcd;Prcd;Prcd;Prcd,0;0;0;0;5091,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,100038570,ENSMUSG00000075410,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11313,cg11768647,0.0000274,0.00000437,6.259489467,1.28E-09,gain,yes,-0.0000143,0.00000743,-1.922795763,0.055421677,neg,ns,0.007139373,0.002176857,3.279669885,0.001157588,pos,ns,2.936446013,-0.00030891,0.0000749,-4.126398054,0.0000474,neg,ns,0.093867648,Foxa1,Foxa1_Intergenic_downstream,12,57535155,57535204,57535203,57535204,50,+,TATTGGAGATAATGAATTCAATCCCCATCAAAGGGCATTAGGCTCGCCCG,Distal Intergenic,12,57540628,57546121,5494,2,Foxa1-201,10917,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,7,15375,ENSMUSG00000035451,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
23907,cg05894328,-0.0000138,0.00000533,-2.588762001,0.010086191,loss,ns,-0.0000174,0.00000906,-1.922741474,0.055428527,neg,ns,-0.007658066,0.002654512,-2.884923914,0.004189465,neg,ns,2.377841453,0.000167923,0.0000913,1.839473932,0.066801616,pos,ns,0.878211734,Gm29344,Gm29344_Intergenic_upstream,1,121046857,121046906,121046857,121046858,50,-,CGGGTCCCTGGAGGCAAAGCATGTTTGACATTATTAATTGGCTTTTCTGT,Distal Intergenic,1,120825247,120825456,210,2,Gm29344-201,-221450,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,7,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26397,cg00842325,0.000137425,0.00000899,15.28881078,1.03E-39,gain,yes,-0.0000294,0.0000153,-1.922663226,0.055438401,neg,ns,0.008812138,0.004473715,1.969758299,0.049756071,pos,ns,1.303153919,0.000193641,0.000153851,1.258632145,0.209110267,pos,ns,0.181220805,Nkx2-2,Nkx2-2_Promoter,2,147195244,147195293,147195244,147195245,50,+,CGCAAACACACTTGGGCTTCGATGGCTCTTTCAGCTGCCACATGGTAGGC,Promoter (1-2kb),2,147186305,147194243,7939,2,Nkx2-2-202,-1001,Nkx2-2-202;Nkx2-2-204,Nkx2-2;Nkx2-2,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,3,30,18088,ENSMUSG00000027434,conserved gene and region,2,147194844,147195372,529,*,529,51,0.674858223,0.847064364,0.096408318,4.22E-38,CpGisland,TRUE,NA,NRS
13140,cg03327303,0.00000256,0.00000118,2.170339861,0.030740031,gain,ns,-0.00000385,0.000002,-1.922560578,0.055451356,neg,ns,-0.001297989,0.000586469,-2.213228182,0.027609943,neg,ns,1.558934488,0.0000201,0.0000202,0.998782951,0.318678818,pos,ns,0.978070119,Efnb3,Efnb3_Exon,11,69556098,69556147,69556098,69556099,50,+,CGACTCTCCGAAGGCTTGGCCCGCCGTCTCCGCCAACACATGGCACCCCC,"Exon (Efnb3-201/Efnb3, exon 5 of 5)",11,69554092,69560205,6114,2,Efnb3-201,4058,Efnb3-201,Efnb3,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,6,13643,ENSMUSG00000003934,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18100,cg07636145,0.00002,0.0000112,1.77604288,0.076706685,gain,ns,0.0000367,0.0000191,1.922556492,0.055451872,pos,ns,0.008494191,0.005598366,1.517262602,0.130219479,pos,ns,0.885324045,0.00000518,0.000192527,0.02688622,0.978567784,pos,ns,0.444279012,Gnao1,Gnao1_Exon,8,93813270,93813319,93813270,93813271,50,+,CGGGGCCTGGGGAATTGCCCTTTGCAACAAGGTGCATGTTGCATCTGTCT,"Exon (4930488L21Rik-202/4930488L21Rik-202, exon 1 of 3)",8,93809966,93950403,140438,1,Gnao1-206,3304,Gnao1-206;Gnao1-202;Gnao1-201;Gnao1-203;Gnao1-207,Gnao1;Gnao1;Gnao1;Gnao1;Gnao1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,13,14681,ENSMUSG00000031748,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
9221,cg20561901,0.00000883,0.00000532,1.658610206,0.098205766,gain,ns,-0.0000174,0.00000905,-1.922444737,0.05546598,neg,ns,0.00071383,0.002649976,0.269372304,0.787822402,pos,ns,0.103571674,-0.000114248,0.0000911,-1.25364253,0.210916572,neg,ns,0.94090925,Gm20517,Gm20517_threeUTR,17,47679674,47679723,47679674,47679675,50,+,CGTAATCATCGAGAGAAGATTGGGGTCCATGTCGTCTTTGACCAGGTATT,3' UTR,17,47611613,47683861,72249,1,Gm20517-202,68061,Gm20517-202;Usp49-201;Usp49-204;Usp49-202,Gm20517;Usp49;Usp49;Usp49,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,6,112694759,ENSMUSG00000023984,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19304,cg19075030,-0.00000628,0.0000049,-1.280532612,0.201315148,loss,ns,0.000016,0.00000833,1.922236285,0.055492302,pos,ns,0.008771124,0.002440837,3.593489994,0.000379373,pos,ns,3.420933209,-0.000218702,0.0000839,-2.605455931,0.009617857,neg,ns,0.905956804,Foxp1,Foxp1_Exon,6,98952724,98952773,98952772,98952773,50,-,CTGCTGTGTATGAATTCAAAAGCTATTAATTTTTCAGTCAAAAATATTCG,"Exon (Foxp1-213/Foxp1, exon 5 of 5)",6,98925338,99266515,341178,2,Foxp1-206,313742,Foxp1-206;Foxp1-204;Foxp1-220;Foxp1-230;Foxp1-225;Foxp1-201;Foxp1-205;Foxp1-207;Foxp1-208;Foxp1-226;Foxp1-228;Foxp1-221;Foxp1-222;Foxp1-210;Foxp1-213,Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,87,108655,ENSMUSG00000030067,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13546,cg13074528,-0.0000149,0.00000594,-2.501575546,0.012879501,loss,ns,0.0000194,0.0000101,1.922097655,0.055509813,pos,ns,0.00628317,0.002956392,2.125283256,0.034353551,pos,ns,1.464028362,-0.000211347,0.00010167,-2.078754768,0.038462011,neg,ns,0.879288454,Gm10172,Gm10172_Intergenic_downstream,7,71234277,71234326,71234325,71234326,50,+,CAAAGCATTAATATCTTTTGTTTGTTTGGCTCAACATGAAACAGGAATCG,Distal Intergenic,7,71332363,71332921,559,2,Gm10172-201,98595,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,31,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9726,cg01406602,-0.00000373,0.00000214,-1.743391217,0.0822567,loss,ns,-0.00000698,0.00000363,-1.921902986,0.055534411,neg,ns,-0.00103187,0.001063795,-0.969989381,0.332807976,neg,ns,0.477806274,-0.0000177,0.0000366,-0.48293962,0.629479485,neg,ns,0.918512436,Osbpl3,Osbpl3_Exon,6,50333256,50333305,50333256,50333257,50,+,CGTAAGCGTTCTTTAAGATCTGTGTTTTGTGCTAGGGCCTGGAACATGTT,"Exon (Osbpl3-204/Osbpl3, exon 11 of 22)",6,50293330,50382837,89508,2,Osbpl3-204,49532,Osbpl3-204;Osbpl3-202;Osbpl3-201;Osbpl3-203;Osbpl3-205;Osbpl3-210,Osbpl3;Osbpl3;Osbpl3;Osbpl3;Osbpl3;Osbpl3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,71720,ENSMUSG00000029822,conserved gene and region,6,50333170,50333263,94,*,94,8,0.627659575,0.866359447,0.085106383,0.00000736,CpGisland,TRUE,U15,NS
1287,cg16293579,5.08E-08,0.00000201,0.025325775,0.97981141,gain,ns,0.00000655,0.00000341,1.92187909,0.055537431,pos,ns,0.002316206,0.000998234,2.320304369,0.02097334,pos,ns,1.678332401,-0.0000851,0.0000343,-2.478751942,0.013716066,neg,ns,0.948726874,Mtr,Mtr_Exon,13,12195291,12195340,12195291,12195292,50,-,CGGAGCTGCCAGACATCAAAGAAAGGCTTCCAGTCAATGTAGTCCACCAG,"Exon (Mtr-201/Mtr, exon 28 of 33)",13,12182712,12258095,75384,2,Mtr-201,62755,Mtr-201;Mtr-202;Mtr-203,Mtr;Mtr;Mtr,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,238505,ENSMUSG00000021311,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24762,cg11238308,-0.0000244,0.00000613,-3.971067097,0.000089,loss,ns,-0.00002,0.0000104,-1.921825763,0.055544171,neg,ns,-0.000983923,0.003052227,-0.322362469,0.747395405,neg,ns,0.126449576,-0.000552579,0.000104966,-5.264370099,0.000000263,neg,yes,0.866714094,Ankrd52,Ankrd52_Exon,10,128379471,128379520,128379471,128379472,50,+,CGGGCCACCAAGTGTGCTGAGGCTCTGGCACCCCTGTTGAGCAGCCTCAA,"Exon (Ankrd52-203/Ankrd52, exon 5 of 15)",10,128377115,128385496,8382,1,Ankrd52-203,2356,Ankrd52-203;Ankrd52-201,Ankrd52;Ankrd52,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,12,237615,ENSMUSG00000014498,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7699,cg08715757,0.0000152,0.00000758,2.004587265,0.045876551,gain,ns,-0.0000247,0.0000129,-1.921752523,0.055553429,neg,ns,0.002162684,0.003772419,0.573288298,0.566865135,pos,ns,0.246520253,-0.0000985,0.000129733,-0.758998006,0.448430463,neg,ns,0.822417357,Arhgap15,Arhgap15_Intron,2,43781357,43781406,43781405,43781406,50,+,AAATAGTTAGAGATGAACTCTACTGCCAATTGTGTCGCTGGCCCTGCACG,"Intron (Arhgap15-203/Arhgap15, intron 2 of 14)",2,43748824,44395953,647130,1,Arhgap15-203,32533,Arhgap15-203;Arhgap15-202;Arhgap15-205;Arhgap15-201,Arhgap15;Arhgap15;Arhgap15;Arhgap15,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,72,78,76117,ENSMUSG00000049744,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15804,cg27430422,-0.00000299,0.00000339,-0.882293176,0.378301906,loss,ns,-0.0000111,0.00000575,-1.921622834,0.055569826,neg,ns,-0.003621406,0.001685614,-2.14841871,0.032454944,neg,ns,1.48871913,0.0000238,0.000058,0.411101867,0.681281884,pos,ns,0.895133695,Taf15,Taf15_Exon,11,83488999,83489048,83488999,83489000,50,+,CGTGGGGGATATGACAAGGATGGAAGAGGTCCTATGACAGGATCAAGGTA,Promoter (<=1kb),11,83489027,83506743,17717,1,Taf15-203,0,Taf15-204;Taf15-201;Taf15-202;Taf15-203,Taf15;Taf15;Taf15;Taf15,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,70439,ENSMUSG00000020680,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26789,cg10426441,0.0000253,0.0000144,1.749607564,0.081175559,gain,ns,0.0000472,0.0000245,1.921592697,0.055573637,pos,ns,0.010825667,0.007190605,1.505529302,0.133206267,pos,ns,0.875475342,-0.0000407,0.000247284,-0.164652581,0.869324752,neg,ns,0.757600564,Tspyl2,Tspyl2_Exon,X,152341538,152341587,152341586,152341587,50,+,ACTGCTTTGACCCAGAAGCCTGGGATATGCTGGATGATGAGGTCTCTGCG,Promoter (<=1kb),20,152336852,152342425,5574,2,Tspyl2-202,838,Gpr173-201;Tspyl2-202;Tspyl2-203;Tspyl2-201;Tspyl2-205;Tspyl2-204,Gpr173;Tspyl2;Tspyl2;Tspyl2;Tspyl2;Tspyl2,0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,2,52808,ENSMUSG00000041096,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9845,cg09733019,0.0000341,0.00000777,4.38416127,0.000016,gain,ns,0.0000254,0.0000132,1.92134324,0.055605189,pos,ns,0.005837296,0.003867567,1.509294201,0.132242137,pos,ns,0.878630142,0.0000856,0.000133005,0.64361582,0.520300435,pos,ns,0.672597741,Gm44402,Gm44402_Intergenic_downstream,6,51077434,51077483,51077482,51077483,50,-,ATGTAGCGCTGCGGAAACTGTCTGTCAGGCCATCAGCAGCTGCTATGACG,Distal Intergenic,6,50967268,50967505,238,1,Gm44402-201,110215,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,9,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23789,cg09266044,0.000189295,0.0000144,13.10064317,1.65E-31,gain,yes,-0.0000472,0.0000245,-1.921228971,0.055619648,neg,ns,-0.001921611,0.007191575,-0.267203088,0.789490472,neg,ns,0.102653107,0.000359918,0.000247318,1.455286588,0.146601813,pos,ns,0.890754954,Mbnl2,Mbnl2_Exon,14,120389001,120389050,120389001,120389002,50,+,CGTAACCGTTTGTATGGATTACATAAAGGGGCGTTGCATGAGGGAGAAAT,"Exon (Mbnl2-201/Mbnl2, exon 5 of 9)",14,120275669,120431697,156029,1,Mbnl2-201,113332,Mbnl2-201;Mbnl2-204;Mbnl2-206;Mbnl2-202;Mbnl2-203;Mbnl2-208;Mbnl2-210,Mbnl2;Mbnl2;Mbnl2;Mbnl2;Mbnl2;Mbnl2;Mbnl2,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,16,105559,ENSMUSG00000022139,conserved gene and region,14,120388889,120389033,145,*,145,10,0.544827586,0.930680359,0.068965517,0.00000206,CpGisland,TRUE,U9,En-Pp
12538,cg06717989,0.0000663,0.0000133,4.993892723,0.00000099,gain,yes,-0.0000433,0.0000226,-1.921047289,0.055642642,neg,ns,0.005813721,0.006606916,0.879944725,0.379570879,pos,ns,0.420707115,-0.0000026,0.000227211,-0.01144603,0.990874952,neg,ns,0.670197332,Plekhm3,Plekhm3_Intergenic_upstream,1,64975449,64975498,64975449,64975450,50,+,CGCTTAAAGCAGACTGCTAGGTCATTGTCTGTGACCACAGCAAGAGAAAC,Distal Intergenic,1,64789121,64956824,167704,2,Plekhm3-201,-18625,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,2,241075,ENSMUSG00000051344,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19919,cg16871469,-0.0000154,0.00000703,-2.189795792,0.029284037,loss,ns,-0.0000229,0.0000119,-1.921005865,0.055647886,neg,ns,-0.010402385,0.003497725,-2.974042832,0.003169771,neg,ns,2.498972134,0.0000872,0.000120286,0.72529631,0.46881741,pos,ns,0.815648056,Ogt,Ogt_Exon,X,101653988,101654037,101654036,101654037,50,+,GGGTGAAACCTCCTATTCCATGCGTAAGGTGCCTCGCTGAAGGGAGCTCG,"Exon (Ogt-205/Ogt, exon 5 of 5)",20,101640060,101682940,42881,1,Ogt-202,13928,Ogt-202;Ogt-206;Ogt-201;Ogt-205;Ogt-204;Ogt-207;Ogt-203,Ogt;Ogt;Ogt;Ogt;Ogt;Ogt;Ogt,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,32,33,108155,ENSMUSG00000034160,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25132,cg17110920,0.0000863,0.00000934,9.244900453,3.91E-18,gain,yes,-0.0000305,0.0000159,-1.920927902,0.055657757,neg,ns,0.017582785,0.004647526,3.783256842,0.000185754,pos,ns,3.731062847,-0.000542208,0.000159828,-3.392442979,0.00078261,neg,ns,0.46739309,Ahdc1,Ahdc1_Intron,4,133047322,133047371,133047370,133047371,50,-,TTCCTTCAGACAATTAGTGACATCTCGCTTGACAACACCACACTGAGCCG,"Intron (Ahdc1-210/Ahdc1, intron 2 of 3)",4,133011260,133060820,49561,1,Ahdc1-210,36062,Ahdc1-210;Ahdc1-203;Ahdc1-204;Ahdc1-205;Ahdc1-207;Ahdc1-211;Ahdc1-209;Ahdc1-206;Ahdc1-201;Ahdc1-202,Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,35,49,230793,ENSMUSG00000037692,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21443,cg12607314,-0.0000153,0.00000363,-4.211282934,0.0000333,loss,ns,-0.0000119,0.00000617,-1.920864526,0.055665782,neg,ns,-0.0026067,0.001807782,-1.441932218,0.150330967,neg,ns,0.822951548,-0.0000156,0.0000622,-0.251389397,0.801679625,neg,ns,0.93177257,Zswim6,Zswim6_Intron,13,107767128,107767177,107767128,107767129,50,-,CGTGGCACATGAGAAGCAATAAAAGGTTGTTTTGCATTACAACTTTAAAA,"Intron (Zswim6-204/Zswim6, intron 4 of 12)",13,107724617,107890064,165448,2,Zswim6-204,122887,Zswim6-204;Zswim6-201,Zswim6;Zswim6,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,26,67263,ENSMUSG00000032846,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2163,cg06877198,0.0000243,0.00000581,4.181116265,0.0000378,gain,ns,0.000019,0.00000987,1.920792043,0.055674961,pos,ns,0.006236634,0.002893037,2.155739525,0.031873289,pos,ns,1.496573119,-0.000150507,0.0000995,-1.512764866,0.131358175,neg,ns,0.082946811,Kdm6a,Kdm6a_fiveUTR,X,18162626,18162675,18162626,18162627,50,-,CGCTGTGTGACACAATTACAACAACTTTGTGCTGGTGCCGGGGAAGTTTG,Promoter (<=1kb),20,18162637,18236715,74079,1,Kdm6a-209,0,Kdm6a-201;Kdm6a-202;Kdm6a-209;Kdm6a-205;Kdm6a-203,Kdm6a;Kdm6a;Kdm6a;Kdm6a;Kdm6a,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,14,22289,ENSMUSG00000037369,conserved gene but different region,X,18162378,18162803,426,*,426,38,0.657276995,0.82697318,0.089201878,3.42E-27,CpGisland,TRUE,U1,Pr-A
8554,cg10633387,0.0000439,0.0000266,1.646140157,0.100748306,gain,ns,-0.000087,0.0000453,-1.92072905,0.055682939,neg,ns,0.01062926,0.013262905,0.801427769,0.423497899,pos,ns,0.37314874,-0.000502266,0.00045611,-1.101194936,0.271666109,neg,ns,0.501855302,Btrc,Btrc_Exon,19,45330009,45330058,45330057,45330058,50,-,TCTCCATCCAATGGGCCAGCGTCGTGGTGACATATCTCTCTTATTGCCCG,"Exon (Gm28578-209/Gm28578-209, exon 6 of 7)",19,45363734,45507736,144003,1,Btrc-204,-33725,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,30,98,12234,ENSMUSG00000025217,conserved gene and region,19,45329908,45330151,244,*,244,14,0.471311475,1.056277056,0.057377049,8.59E-08,CpGisland,TRUE,NA,NRS
3906,cg21332416,-0.00000208,0.00000144,-1.439096495,0.151132107,loss,ns,-0.00000471,0.00000245,-1.920715193,0.055684694,neg,ns,-0.001030022,0.000717987,-1.434598012,0.152409705,neg,ns,0.816987378,-0.0000157,0.0000247,-0.634878376,0.525976031,neg,ns,0.961188327,Hnrnpul1,Hnrnpul1_Exon,7,25733245,25733294,25733245,25733246,50,-,CGCATCTTATCCATGATGGCATTGGTACCCAGGATGTTGTACTTCTTGGA,"Exon (Hnrnpul1-205/Hnrnpul1, exon 9 of 15)",7,25721165,25754757,33593,2,Hnrnpul1-205,21463,Hnrnpul1-205;Hnrnpul1-201;Hnrnpul1-202,Hnrnpul1;Hnrnpul1;Hnrnpul1,0;0;21407,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,232989,ENSMUSG00000040725,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20944,cg25875280,-0.00000505,0.00000238,-2.116202565,0.035124405,loss,ns,-0.00000778,0.00000405,-1.920630118,0.055695472,neg,ns,0.002017615,0.001186636,1.700280697,0.090081086,pos,ns,1.045366386,-0.000200731,0.0000408,-4.918863041,0.00000142,neg,yes,0.963711722,Ranbp10,Ranbp10_Exon,8,105779902,105779951,105779902,105779903,50,-,CGCCACTCCCGCATGTAGTCCTCAATGTCAAACAGGAAGGGCTGCTGCCC,"Exon (Ranbp10-201/Ranbp10, exon 6 of 14)",8,105768308,105827350,59043,2,Ranbp10-201,47399,Ranbp10-201;Ranbp10-203,Ranbp10;Ranbp10,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,74334,ENSMUSG00000037415,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1363,cg02244090,0.0000066,0.00000521,1.267083416,0.206076532,gain,ns,0.000017,0.00000885,1.920611542,0.055697825,pos,ns,0.007041473,0.002593399,2.715151665,0.006995833,pos,ns,2.155160586,-0.000173704,0.0000892,-1.947641831,0.05236034,neg,ns,0.080796547,Sox1,Sox1_Intron,8,12431383,12431432,12431383,12431384,50,+,CGATCTTTATGTAAAGCTAACAGCGGATAATTGTCTATTTTCTCGCCAAC,"Intron (Sox1ot-201/Sox1ot-201, intron 7 of 8)",8,12395295,12400126,4832,1,Sox1-201,36088,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,15,20664,ENSMUSG00000096014,mapped to different genes,8,12431094,12431559,466,*,466,37,0.603004292,0.882846902,0.079399142,1.38E-24,CpGisland,TRUE,U13,Hc-P
19279,cg26280489,0.00000682,0.00000445,1.534085644,0.126028502,gain,ns,-0.0000145,0.00000756,-1.920081899,0.05576496,neg,ns,-0.002873491,0.002213964,-1.297894325,0.195288515,neg,ns,0.709323298,-0.000072,0.0000761,-0.945271291,0.345256569,neg,ns,0.757306281,Foxp1,Foxp1_Intron,6,98931069,98931118,98931117,98931118,50,-,ATCAGAATAATAACGCTGTCAGCTGTAAACAAGGCAAAACATGAGGCCCG,"Intron (Foxp1-206/Foxp1, intron 17 of 17)",6,98925338,99266515,341178,2,Foxp1-206,335397,Foxp1-206;Foxp1-204;Foxp1-229;Foxp1-220;Foxp1-230;Foxp1-225;Foxp1-201;Foxp1-205;Foxp1-207;Foxp1-208;Foxp1-226;Foxp1-228;Foxp1-221;Foxp1-222;Foxp1-217,Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1,0;0;-1284;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,87,108655,ENSMUSG00000030067,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11241,cg06166972,0.0000925,0.00000818,11.31245487,4.54E-25,gain,yes,0.0000267,0.0000139,1.919940227,0.055782929,pos,ns,0.019991682,0.00407003,4.911925351,0.00000146,pos,ns,5.834965662,-0.0000416,0.000139968,-0.297095436,0.766592622,neg,ns,0.487872955,Nr4a2,Nr4a2_fiveUTR,2,57112226,57112275,57112226,57112227,50,+,CGTAGCCTGTGCTGTAGTTGTCCATAAAGGTACTGAAGCTGGGGAGAGAA,5' UTR,2,57106830,57115038,8209,2,Nr4a2-201,2763,Nr4a2-201;Nr4a2-203;Nr4a2-206;Nr4a2-202;Nr4a2-205;Nr4a2-204,Nr4a2;Nr4a2;Nr4a2;Nr4a2;Nr4a2;Nr4a2,0;0;0;0;0;2098,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,25,18227,ENSMUSG00000026826,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
19172,cg15844207,-0.0000117,0.00000265,-4.417344642,0.0000138,loss,ns,-0.00000864,0.0000045,-1.919858415,0.055793308,neg,ns,-0.000910653,0.001318726,-0.690555212,0.490361809,neg,ns,0.309483362,-0.0000382,0.0000454,-0.842482828,0.400167256,neg,ns,0.96469468,Thra,Thra_Exon,11,98763015,98763064,98763015,98763016,50,+,CGGCCATCACCCGTGTGGTGGACTTTGCCAAAAAACTGCCCATGTTCTCC,"Exon (Thra-201/Thra, exon 7 of 10)",11,98741811,98769006,27196,1,Thra-201,21204,Nr1d1-201;Thra-201;Thra-202;Thra-203,Nr1d1;Thra;Thra;Thra,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,13,18,21833,ENSMUSG00000058756,conserved gene and region,11,98762864,98763065,202,*,202,12,0.584158416,0.703628447,0.059405941,0.000000649,CpGisland,TRUE,NA,NRS
15881,cg06499736,0.0000305,0.0000139,2.190625476,0.029223295,gain,ns,0.0000454,0.0000236,1.919813327,0.055799029,pos,ns,0.018452227,0.006927632,2.66356902,0.008135726,pos,ns,2.089603679,-0.000309105,0.000238241,-1.297448748,0.195441504,neg,ns,0.707701904,Gm6411,Gm6411_Intron,13,83741808,83741857,83741808,83741809,50,+,CGTCAGACAAAACTAGTGTCTCTTGTTCCGAGCCCTTGTCTATGCAACCA,"Intron (C130071C03Rik-204/C130071C03Rik-204, intron 3 of 3)",13,83761132,83762335,1204,2,Gm6411-201,20478,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,36,623241,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
23560,cg18528188,0.00000101,0.00000297,0.339798199,0.734238611,gain,ns,-0.00000969,0.00000505,-1.91955466,0.055831858,neg,ns,0.000969557,0.001478557,0.655745185,0.512474456,pos,ns,0.290327777,-0.0000649,0.0000508,-1.276903966,0.202591773,neg,ns,0.910746929,Bahd1,Bahd1_Exon,2,118922492,118922541,118922540,118922541,50,+,GACACGGACCCTGAGCTGGTGTTCCTTTGCCGCCATGTCTATGACTTCCG,"Exon (Bahd1-201/Bahd1, exon 7 of 7)",2,118901453,118924528,23076,1,Bahd1-201,21039,Bahd1-201;Chst14-201;Chst14-202,Bahd1;Chst14;Chst14,0;-3955;-3973,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,228536,ENSMUSG00000040007,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5845,cg00803366,-0.0000312,0.00000377,-8.291201954,3.45E-15,loss,yes,0.0000123,0.0000064,1.919429678,0.055847726,pos,ns,-0.00404506,0.001875189,-2.157147446,0.031762462,neg,ns,1.498085841,0.00014796,0.0000645,2.294394555,0.022436059,pos,ns,0.940682882,Mylk,Mylk_Exon,16,34979227,34979276,34979275,34979276,50,+,AGTGATCAACTATGAGCCCATCGGCTACGCCACAGACATGTGGAGCATCG,"Exon (Mylk-201/Mylk, exon 27 of 32)",16,34784921,35002420,217500,1,Mylk-201,194306,Mylk-201;Mylk-207,Mylk;Mylk,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,7,107589,ENSMUSG00000022836,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12841,cg15620299,-0.0000019,0.00000169,-1.120753384,0.263260325,loss,ns,0.00000552,0.00000288,1.91942854,0.05584787,pos,ns,0.001466543,0.000842645,1.740403659,0.082780451,pos,ns,1.082072209,-0.00006,0.000029,-2.069308858,0.039345468,neg,ns,0.964927052,Rsrc1,Rsrc1_Intron,3,67289630,67289679,67289630,67289631,50,-,CGGCAATAAAGGAGAATCGCTCCTTTGAGACATTAATGCTTTGGAATAAA,"Intron (Rsrc1-206/Rsrc1, intron 6 of 9)",3,66981390,67356559,375170,1,Rsrc1-206,308240,Rsrc1-206;Rsrc1-203;Rsrc1-202;Rsrc1-201;Rsrc1-209;Rsrc1-205,Rsrc1;Rsrc1;Rsrc1;Rsrc1;Rsrc1;Rsrc1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,37,66880,ENSMUSG00000034544,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4598,cg06410149,-0.0000019,0.00000189,-1.005324374,0.315524742,loss,ns,0.00000615,0.0000032,1.919395428,0.055852075,pos,ns,0.00285353,0.000938869,3.039328273,0.002573026,pos,ns,2.58955583,-0.0000818,0.0000323,-2.532695729,0.011812016,neg,ns,0.959826552,E2f3,E2f3_Exon,13,29913470,29913519,29913518,29913519,50,-,TTTAAGGCCACTAATTTTTCGAATATCTTGATATGTAACATAAGCTAACG,"Exon (E2f3-203/E2f3, exon 5 of 7)",13,29906575,29984391,77817,2,E2f3-203,70872,E2f3-203;E2f3-204;E2f3-201,E2f3;E2f3;E2f3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,10,13557,ENSMUSG00000016477,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8910,cg00109797,-0.00000718,0.00000235,-3.060868684,0.002400018,loss,ns,0.00000765,0.00000398,1.919286766,0.055865875,pos,ns,0.00380575,0.00116729,3.260329381,0.00123665,pos,ns,2.907753065,-0.0000811,0.0000401,-2.020883831,0.044151137,neg,ns,0.071199644,Helt,Helt_Promoter,8,46294956,46295005,46294956,46294957,50,-,CGGGGGGAAGAGGCTCAATTTGTAGCCTATTATCCTATACGAAAATGTCC,Promoter (<=1kb),8,46292039,46294671,2633,2,Helt-201,-334,Helt-201;Helt-202;Helt-203,Helt;Helt;Helt,0;-967;-1621,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,15,22,234219,ENSMUSG00000047171,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
3927,cg08568054,-0.00000623,0.00000404,-1.543003426,0.123850111,loss,ns,0.0000132,0.00000686,1.919202087,0.055876631,pos,ns,0.007859209,0.002011006,3.908098535,0.000114269,pos,ns,3.942070171,-0.000236424,0.0000692,-3.418587518,0.000713632,neg,ns,0.904535481,Gm7847,Gm7847_Intergenic_downstream,18,25810517,25810566,25810565,25810566,50,-,GAGAAAATTACTGAAAACTGAAATATCAAACAATCGTGAGCAAATGCTCG,Distal Intergenic,18,25823581,25824357,777,2,Gm7847-201,13840,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,22,665916,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1504,cg27193386,-0.00000766,0.00000483,-1.584579605,0.114081441,loss,ns,0.0000158,0.00000821,1.919196133,0.055877387,pos,ns,0.000322418,0.002406291,0.133989467,0.893497847,pos,ns,0.048906489,0.0000148,0.0000828,0.178841257,0.858179173,pos,ns,0.060676082,Maml2,Maml2_Promoter,9,13297011,13297060,13297011,13297012,50,-,CGGGGATGGAATGTACAAAAGTGGACAGAAAAGTGGCTGGACATGACTCG,Promoter (<=1kb),9,13297957,13709388,411432,1,Maml2-202,-946,Ccdc82-206;Ccdc82-201;Maml2-202,Ccdc82;Ccdc82;Maml2,50043;50032;-897,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,3,270118,ENSMUSG00000031925,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9778,cg18232282,0.0000505,0.0000122,4.127273111,0.0000472,gain,ns,-0.0000399,0.0000208,-1.9190089,0.055901176,neg,ns,0.020961376,0.006094641,3.439312759,0.00066303,pos,ns,3.178466533,-0.000821283,0.000209594,-3.918441864,0.000109698,neg,ns,0.743630478,Ascc3,Ascc3_Intron,10,50834228,50834277,50834228,50834229,50,+,CGGAAATGACTTTTTGATTAATTAAGTTTGTTAGACAGCAGCTGAGCTTC,"Intron (Ascc3-201/Ascc3, intron 37 of 41)",10,50592669,50851485,258817,1,Ascc3-201,241559,Ascc3-201;Ascc3-202,Ascc3;Ascc3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,6,77987,ENSMUSG00000038774,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9171,cg01493609,0.000077,0.0000094,8.189667523,6.92E-15,gain,yes,-0.0000306,0.000016,-1.918937883,0.055910202,neg,ns,-0.004873624,0.004678574,-1.041690036,0.298367114,neg,ns,0.525249047,0.000188442,0.000160896,1.171205956,0.242415444,pos,ns,0.607256456,Cadm1,Cadm1_Intron,9,47363265,47363314,47363313,47363314,50,-,AAGGCAAAATCCACCAAACAAGCTATTACACTTAAATCAGACAATGCCCG,"Intron (Gm31816-201/Gm31816-201, intron 1 of 5)",9,47530173,47853385,323213,1,Cadm1-204,-166908,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,77,54725,ENSMUSG00000032076,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18584,cg18475684,0.00000881,0.00000427,2.061738373,0.040065964,gain,ns,0.0000139,0.00000726,1.918898496,0.055915208,pos,ns,0.000430901,0.002127314,0.202556253,0.839614759,pos,ns,0.075919936,-0.000073,0.0000732,-0.997941277,0.319086149,neg,ns,0.094028426,Hoxb5,Hoxb5_Exon,11,96303408,96303457,96303456,96303457,50,+,CATCAGCGAGAATTTACGACTGGTCAACAAAAGCACGTGATTCCCTAACG,Promoter (<=1kb),11,96303336,96306121,2786,1,Hoxb5-202,72,Hoxb5-202;Hoxb5-201;Hoxb6-202;Hoxb6-201,Hoxb5;Hoxb5;Hoxb6;Hoxb6,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,22,34,15413,ENSMUSG00000038700,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
20549,cg21410921,0.000000157,0.00000607,0.025872263,0.97937587,gain,ns,0.0000198,0.0000103,1.918857754,0.055920386,pos,ns,0.004276703,0.003022293,1.415052174,0.158056924,pos,ns,0.801186474,-0.000281845,0.000103936,-2.711701335,0.007067325,neg,ns,0.867668837,Chic1,Chic1_Exon,X,103389451,103389500,103389499,103389500,50,-,ATTTTGCAGGTAATACTAATAGAATTCTTACCAAAATATCCCATATTCCG,"Exon (Chic1-201/Chic1, exon 6 of 6)",20,103356476,103396092,39617,1,Chic1-201,32975,Chic1-201,Chic1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,12212,ENSMUSG00000031327,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
660,cg14273219,0.0000427,0.00000917,4.660755253,0.00000469,gain,ns,0.0000299,0.0000156,1.91863852,0.05594826,pos,ns,0.01021922,0.004564282,2.238954651,0.025868083,pos,ns,1.58723576,-0.000256059,0.000156965,-1.631309744,0.103840427,neg,ns,0.735633344,Ppp1r3f,Ppp1r3f_Exon,X,7573336,7573385,7573384,7573385,50,+,GCAGCTGCTGCTGCTGGGGCAGCCCTTCGGCATCAGTGGGTGTGGGAGCG,Promoter (<=1kb),20,7557296,7574283,16988,2,Ppp1r3f-205,898,Foxp3-209;Ppp1r3f-205;Ppp1r3f-201;Ppp1r3f-203,Foxp3;Ppp1r3f;Ppp1r3f;Ppp1r3f,-259;0;0;-493,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,8,54646,ENSMUSG00000039556,conserved gene but different region,X,7573363,7573550,188,*,188,18,0.659574468,0.895238095,0.095744681,1.08E-13,CpGisland,TRUE,U6,En-Sp
12200,cg05153898,-0.00000173,0.00000169,-1.023143448,0.307037773,loss,ns,0.00000552,0.00000288,1.918389966,0.055979876,pos,ns,0.002666596,0.000843048,3.163041131,0.001715999,pos,ns,2.765482939,-0.0000655,0.000029,-2.259512526,0.024545594,neg,ns,0.956123084,Map2k5,Map2k5_Exon,9,63339076,63339125,63339076,63339077,50,-,CGTACCTTCAGGCCATGTATGTTCCGTTCCCCAGGAGGCTTGCAGGCTGA,"Exon (Map2k5-201/Map2k5, exon 5 of 22)",9,63163768,63377902,214135,2,Map2k5-201,38777,Map2k5-201;Map2k5-203,Map2k5;Map2k5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,37,23938,ENSMUSG00000058444,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21931,cg05537796,0.00000593,0.00000496,1.196016273,0.232604209,gain,ns,0.0000162,0.00000842,1.918379865,0.055981161,pos,ns,0.001757317,0.002466637,0.712434098,0.476731869,pos,ns,0.321725815,-0.0000935,0.0000848,-1.102253835,0.271206342,neg,ns,0.81145946,Gm9661,Gm9661_Exon,12,109743307,109743356,109743307,109743308,50,+,CGACCAGTTGGAAAGTAATTGTTTCTAATGTACTTCACCTGGTCCACTAG,"Exon (Mir412-201/Mir412-201, exon 1 of 1)",12,109827003,109828124,1122,1,Gm9661-201,-83647,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,8,675987,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18558,cg20706331,0.000130235,0.0000108,12.04824306,1.11E-27,gain,yes,-0.0000352,0.0000184,-1.9182714,0.055994962,neg,ns,0.012674388,0.005379987,2.355839776,0.019103318,pos,ns,1.718891204,-0.0000561,0.000185017,-0.303329573,0.761842177,neg,ns,0.309045847,Hoxb7,Hoxb7_Promoter,11,96287394,96287443,96287442,96287443,50,+,GCCTTTTAGCTTTAAATATTTATCAGCAGCGCCGGCACGGGCTGGAGACG,Promoter (<=1kb),11,96286623,96290162,3540,1,Hoxb7-201,771,Hoxb7-201;Hoxb7-202;Hoxb8-201;Hoxb8-202;Hoxb8-203,Hoxb7;Hoxb7;Hoxb8;Hoxb8;Hoxb8,0;-1272;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,2,8,15415,ENSMUSG00000038721,conserved gene and region,11,96287329,96287449,121,*,121,10,0.611570248,0.939440994,0.082644628,0.000000392,CpGisland,TRUE,U13,Hc-P
13152,cg16643400,0.0000183,0.00000467,3.910944187,0.000112994,gain,ns,-0.0000152,0.00000793,-1.918164724,0.056008539,neg,ns,0.001531349,0.002323168,0.659164054,0.510279763,pos,ns,0.292191655,-0.0000998,0.0000799,-1.249211084,0.212530298,neg,ns,0.837248926,Ikzf2,Ikzf2_Exon,1,69577822,69577871,69577870,69577871,50,-,ATGCAAACCATGCCACAGACGTCACATTTCAGTTTACCATTCGGAAGCCG,"Exon (Ikzf2-201/Ikzf2, exon 4 of 8)",1,69531214,69685821,154608,2,Ikzf2-201,107950,Ikzf2-201;Ikzf2-207;Ikzf2-202;Ikzf2-204;Ikzf2-208;Ikzf2-209;Ikzf2-206,Ikzf2;Ikzf2;Ikzf2;Ikzf2;Ikzf2;Ikzf2;Ikzf2,0;0;0;0;0;0;107429,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,14,22779,ENSMUSG00000025997,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16167,cg08230071,-0.0000362,0.00000895,-4.041531671,0.000067,loss,ns,0.0000292,0.0000152,1.917968917,0.056033467,pos,ns,0.022094446,0.004454065,4.960513005,0.00000116,pos,ns,5.935205679,-0.000876479,0.000153175,-5.722079529,2.48E-08,neg,yes,0.293151489,Bnc2,Bnc2_fiveUTR,4,84546291,84546340,84546291,84546292,50,-,CGAACTGCATGGAGTTGTCAGTACAGGAGTCTCTTAAAGTCAAGTCTCTT,5' UTR,4,84275095,84675034,399940,2,Bnc2-201,128694,Bnc2-201;Bnc2-202;Bnc2-214;Bnc2-215;Bnc2-206;Bnc2-211;Bnc2-217;Bnc2-207;Bnc2-203;Bnc2-209;Bnc2-221;Bnc2-204;Bnc2-220;Bnc2-210,Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,TRUE,TRUE,TRUE,FALSE,FALSE,fiveUTR,8,91,242509,ENSMUSG00000028487,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
18264,cg21615099,0.0000382,0.0000123,3.097174891,0.002132449,gain,ns,0.0000402,0.000021,1.917804197,0.056054444,pos,ns,0.009024867,0.006140708,1.469678579,0.142662955,pos,ns,0.845688784,-0.000184908,0.000211178,-0.875601688,0.381924534,neg,ns,0.719334714,Ap3b1,Ap3b1_Intergenic_downstream,13,94645526,94645575,94645526,94645527,50,-,CGCTTCAGCTCTGCCCCTGCAACAGAGGATCTAATCAATCTGCCGGCTAT,Distal Intergenic,13,94542303,94547867,5565,1,Ap3b1-202,103272,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,33,55,11774,ENSMUSG00000021686,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13438,cg19691645,-0.000000616,0.00000172,-0.358657381,0.720095546,loss,ns,0.0000056,0.00000292,1.917561372,0.05608538,pos,ns,-0.0000703,0.000855333,-0.082141971,0.934586828,neg,ns,0.029380344,0.00000566,0.0000294,0.192413593,0.847544232,pos,ns,0.968704223,Sltm,Sltm_threeUTR,9,70573719,70573768,70573719,70573720,50,-,CGCCATTGCACAGAGCCCGGAGAAGGAAAGCAAGGATTATGAGATGAATG,3' UTR,9,70542754,70592234,49481,1,Sltm-206,30965,Sltm-206;Sltm-203;Sltm-201;Sltm-208;Sltm-204,Sltm;Sltm;Sltm;Sltm;Sltm,0;0;0;0;-1640,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,11,66660,ENSMUSG00000032212,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20052,cg14892771,0.0000318,0.000059,0.539938593,0.589627029,gain,ns,-0.00019207,0.000100213,-1.916617748,0.056205732,neg,ns,-0.057906536,0.029359014,-1.972359709,0.049457049,neg,ns,1.305771805,0.000350484,0.001009654,0.347132735,0.728727143,pos,ns,0.183767838,Sp7,Sp7_Intron,15,102362894,102362943,102362894,102362895,50,+,CGGCCCTCACACTGCGGCCACAGGGGCCTCAGCCAAGCCCAGGGACCCCA,"Intron (Sp7-201/Sp7, intron 1 of 1)",15,102356606,102366513,9908,2,Sp7-201,3570,Sp7-201;Sp7-202;Sp7-203,Sp7;Sp7;Sp7,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,10,170574,ENSMUSG00000060284,conserved gene and region,15,102362835,102362895,61,*,61,9,0.639344262,1.467914439,0.147540984,0.00000001,CpGisland,TRUE,U3,Pr-B
21063,cg08682916,-0.00000854,0.0000165,-0.517622059,0.605091158,loss,ns,0.0000537,0.000028,1.916603031,0.056207611,pos,ns,0.011886482,0.00821506,1.44691354,0.148931543,pos,ns,0.82701331,-0.000510698,0.000282515,-1.807684327,0.071624818,neg,ns,0.339545128,Vrk1,Vrk1_Intergenic_downstream,12,106227115,106227164,106227115,106227116,50,-,CGAATTTGGCGGATCATCATTTTAAAAGGGGGCTTGTTAAGGTAATCATT,Distal Intergenic,12,106030717,106075409,44693,1,Vrk1-204,196447,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,29,37,22367,ENSMUSG00000021115,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11746,cg22963849,-0.0000029,0.0000032,-0.905945692,0.36566819,loss,ns,0.0000104,0.00000543,1.916510425,0.056219435,pos,ns,0.003333879,0.001591238,2.095148027,0.036968983,pos,ns,1.432162497,-0.00011296,0.0000547,-2.064234448,0.039827176,neg,ns,0.937466543,Abi2,Abi2_Exon,1,60437116,60437165,60437164,60437165,50,-,AAAAACACTTCAAGGACACATAAGATTATTGCTCCAGCCAACCTTGAACG,"Exon (Abi2-201/Abi2, exon 3 of 9)",1,60409619,60481158,71540,1,Abi2-201,27497,Abi2-201;Abi2-206;Abi2-207;Abi2-210;Abi2-212;Abi2-208;Abi2-205;Abi2-209;Abi2-202;Abi2-204;Abi2-203;Abi2-211,Abi2;Abi2;Abi2;Abi2;Abi2;Abi2;Abi2;Abi2;Abi2;Abi2;Abi2;Abi2,0;0;0;0;0;0;0;27308;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,9,329165,ENSMUSG00000026782,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5520,cg27111552,-0.000000894,0.00000679,-0.131796956,0.895230392,loss,ns,-0.0000221,0.0000115,-1.916208778,0.056257961,neg,ns,-0.01065062,0.00337705,-3.153823205,0.001769368,neg,ns,2.752181843,0.000462877,0.000116136,3.985629836,0.000084,pos,ns,0.855928853,Kalrn,Kalrn_Exon,16,34176376,34176425,34176376,34176377,50,+,CGGATCAGCGACTTCGGGTCCCACACTTGAAAGGCATCCTGGAGAATCAA,"Exon (Kalrn-201/Kalrn, exon 30 of 60)",16,33975495,34456917,481423,2,Kalrn-201,280492,Kalrn-201;Kalrn-217;Kalrn-208;Kalrn-207;Kalrn-206;Kalrn-202;Kalrn-205;Kalrn-204;Kalrn-218;Kalrn-203,Kalrn;Kalrn;Kalrn;Kalrn;Kalrn;Kalrn;Kalrn;Kalrn;Kalrn;Kalrn,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,18,22,545156,ENSMUSG00000061751,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27633,cg08395267,0.0000504,0.0000142,3.550925975,0.000443465,gain,ns,0.0000462,0.0000241,1.916106983,0.056270967,pos,ns,0.028367155,0.007060665,4.017632385,0.0000738,pos,ns,4.131733927,-0.000660796,0.000242816,-2.721390435,0.006868218,neg,ns,0.356521625,Aim2,Aim2_Intron,1,173390354,173390403,173390354,173390355,50,-,CGCTGGACTTCTAATCCAGAGGTTCCGGGTTCGAGTCCCGGCAGAGATGG,"Intron (Aim2-202/Aim2, intron 1 of 11)",1,173350879,173466040,115162,1,Aim2-202,39475,Aim2-202,Aim2,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,7,383619,ENSMUSG00000037860,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25758,cg01233692,-0.0000235,0.00000725,-3.238865676,0.001330242,loss,ns,-0.0000236,0.0000123,-1.916048802,0.056278402,neg,ns,0.011693609,0.003605938,3.242875566,0.001312273,pos,ns,2.881975838,-0.000426259,0.000124008,-3.437356099,0.00066766,neg,ns,0.919646224,Ubr4,Ubr4_Exon,4,139486065,139486114,139486065,139486066,50,+,CGAAGCTGCCGACAAAGCCCTGAAAACCTTCCAGGAGGAGTTCATGCCAG,"Exon (Ubr4-212/Ubr4, exon 105 of 106)",4,139380659,139489530,108872,1,Ubr4-212,105406,Ubr4-212;Ubr4-201;Ubr4-209;Ubr4-205,Ubr4;Ubr4;Ubr4;Ubr4,0;0;7121;5685,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,10,69116,ENSMUSG00000066036,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15294,cg14625962,-0.0000178,0.00000305,-5.816124112,0.000000015,loss,yes,0.00000994,0.00000519,1.91599032,0.056285876,pos,ns,-0.001036457,0.001519762,-0.681986049,0.495756992,neg,ns,0.304731152,0.0000507,0.0000523,0.96935403,0.333124262,pos,ns,0.952075425,Srsf7,Srsf7_threeUTR,17,80205040,80205089,80205040,80205041,50,-,CGTGACATTCTGAATCAAGGCGACTGACTCAAACGAAGAAACCTGAAAGG,3' UTR,17,80200080,80207305,7226,2,Srsf7-201,2216,Srsf7-201;Srsf7-202;Srsf7-203;Srsf7-205;Srsf7-206;Srsf7-207;Srsf7-208;Srsf7-204;Ttc39d-202,Srsf7;Srsf7;Srsf7;Srsf7;Srsf7;Srsf7;Srsf7;Srsf7;Ttc39d,0;0;0;0;0;0;0;0;-2371,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,7,8,225027,ENSMUSG00000024097,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19604,cg14856567,0.0000237,0.0000047,5.039154838,0.000000796,gain,yes,-0.0000153,0.00000799,-1.915820476,0.056307588,neg,ns,-0.004870656,0.002339949,-2.081522161,0.038206413,neg,ns,1.417863731,0.000210644,0.0000805,2.617650847,0.009288153,pos,ns,0.926227006,Hnrnpdl,Hnrnpdl_threeUTR,5,100035680,100035729,100035680,100035681,50,-,CGTGCGACCCCCAGAGATAGACGTGGTCAGGGTGACACACGGCCTGCAAT,Promoter (<=1kb),5,100033577,100036068,2492,2,Hnrnpdl-203,339,Enoph1-202;Enoph1-201;Enoph1-203;Hnrnpdl-203;Hnrnpdl-202;Hnrnpdl-207;Hnrnpdl-201;Hnrnpdl-204;Hnrnpdl-205;Hnrnpdl-206,Enoph1;Enoph1;Enoph1;Hnrnpdl;Hnrnpdl;Hnrnpdl;Hnrnpdl;Hnrnpdl;Hnrnpdl;Hnrnpdl,0;0;0;0;0;0;0;0;0;1394,TRUE,FALSE,TRUE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,8,8,50926,ENSMUSG00000029328,conserved gene and region,5,100035645,100035745,101,*,101,9,0.613861386,0.945889698,0.089108911,0.000001,CpGisland,TRUE,U12,Tr-I
27759,cg25788285,-0.0000222,0.00000951,-2.330111317,0.02044188,loss,ns,0.000031,0.0000162,1.915683954,0.056325044,pos,ns,0.006049708,0.004734224,1.277866982,0.20225239,pos,ns,0.694106338,0.0000836,0.00016281,0.513717543,0.607815443,pos,ns,0.420550793,Susd4,Susd4_Exon,1,182765108,182765157,182765156,182765157,50,-,CTCAGTCCCCCCAGAGACTCTTGGCCGTGATCCTGTGGTTTCAGCTGGCG,"Exon (Susd4-203/Susd4, exon 2 of 4)",1,182763860,182854040,90181,1,Susd4-203,1248,Susd4-203;Susd4-202;Susd4-204;Susd4-205;Susd4-201,Susd4;Susd4;Susd4;Susd4;Susd4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,96935,ENSMUSG00000038576,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
136,cg06160315,-0.00000407,0.00000309,-1.316536078,0.188966687,loss,ns,-0.0000101,0.00000525,-1.915245239,0.056381173,neg,ns,-0.001779121,0.001538234,-1.156599923,0.248326358,neg,ns,0.604977181,0.000038,0.0000529,0.717466527,0.473626557,pos,ns,0.944123923,Kdm2a,Kdm2a_Exon,19,4324745,4324794,4324793,4324794,50,-,AGCTCCTTTTTGCCGCTGGGATTGTTCTCCTTTTCCCGTACCATGGTGCG,"Exon (Kdm2a-201/Kdm2a, exon 17 of 21)",19,4314419,4398285,83867,2,Kdm2a-201,73491,Kdm2a-201;Kdm2a-202;Kdm2a-213;Kdm2a-211;Kdm2a-207;Kdm2a-214;Kdm2a-212;Kdm2a-210,Kdm2a;Kdm2a;Kdm2a;Kdm2a;Kdm2a;Kdm2a;Kdm2a;Kdm2a,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,21,30,225876,ENSMUSG00000054611,conserved gene and region,19,4324711,4324995,285,*,285,19,0.621052632,0.696373457,0.066666667,1.66E-11,CpGisland,TRUE,U10,Tr-S
5975,cg17819031,0.0000162,0.00000554,2.928618306,0.003657069,gain,ns,-0.000018,0.00000941,-1.915239956,0.056381849,neg,ns,-0.009177409,0.002758106,-3.327431426,0.000982007,neg,ns,3.007885254,0.000370358,0.0000949,3.904631985,0.000115841,pos,ns,0.850091716,Sema5b,Sema5b_Exon,16,35647187,35647236,35647235,35647236,50,-,CTGGAGGACACATGGACCACATTCATGAAGGCCCGGCTCAACTGCTCCCG,"Exon (Sema5b-205/Sema5b, exon 6 of 6)",16,35541145,35648140,106996,1,Sema5b-205,106042,Sema5b-205;Sema5b-202;Sema5b-201,Sema5b;Sema5b;Sema5b,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,5,20357,ENSMUSG00000052133,conserved gene and region,16,35647072,35647240,169,*,169,12,0.597633136,0.80861244,0.071005917,9.46E-08,CpGisland,TRUE,U11,Tr-P
27146,cg18598828,-0.00000453,0.00000333,-1.362066785,0.174165699,loss,ns,0.0000108,0.00000565,1.91515792,0.056392349,pos,ns,0.002268997,0.001655273,1.370768813,0.171438677,pos,ns,0.765891192,-0.000031,0.0000569,-0.54418161,0.586707689,neg,ns,0.945858337,Rps6ka3,Rps6ka3_threeUTR,X,159363554,159363603,159363554,159363555,50,+,CGTATCTGAGAGACACCTGCAAGCACACACTGTCCCAGCTGGTACCCATA,3' UTR,20,159210307,159364502,154196,1,Rps6ka3-204,153247,Rps6ka3-204;Rps6ka3-201;Rps6ka3-206;Rps6ka3-208,Rps6ka3;Rps6ka3;Rps6ka3;Rps6ka3,0;0;1233;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,6,110651,ENSMUSG00000031309,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7362,cg24633083,0.0000424,0.00000624,6.796786143,5.49E-11,gain,yes,-0.0000203,0.0000106,-1.91514591,0.056393887,neg,ns,0.006799544,0.003106956,2.188490907,0.029379789,pos,ns,1.531951331,-0.000227078,0.000106848,-2.125245799,0.034356701,neg,ns,0.102729183,Pou4f3,Pou4f3_fiveUTR,18,42395097,42395146,42395097,42395098,50,+,CGCCTTCTCGCTTGCAGCTGCAGGGTAATATATTTGGAAGCTTTGATGAG,Promoter (<=1kb),18,42394539,42397249,2711,1,Pou4f3-201,558,Pou4f3-201;Pou4f3-202,Pou4f3;Pou4f3,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,7,17,18998,ENSMUSG00000024497,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
22678,cg15051865,-0.00000156,0.00000207,-0.75506166,0.450785246,loss,ns,0.00000672,0.00000351,1.915107486,0.056398806,pos,ns,0.002573073,0.001027881,2.503278544,0.012818938,pos,ns,1.892147948,-0.0000768,0.0000353,-2.172290088,0.030591321,neg,ns,0.947151862,BC052040,BC052040_Exon,2,115687083,115687132,115687131,115687132,50,+,TCACTGGATTGAAAGCAAAGCCTCATTTGGTGATGAATGTAGCCACCACG,"Exon (BC052040-203/BC052040, exon 10 of 11)",2,115581716,115778768,197053,1,BC052040-203,105367,BC052040-203;BC052040-201,BC052040;BC052040,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,49,399568,ENSMUSG00000040282,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7389,cg06414031,-0.00000378,0.00000241,-1.567581779,0.117998925,loss,ns,0.00000785,0.0000041,1.915096099,0.056400264,pos,ns,0.003502578,0.001200798,2.916875283,0.00379372,pos,ns,2.420934747,-0.000106554,0.0000413,-2.580301975,0.010331236,neg,ns,0.950920848,Tcerg1,Tcerg1_Exon,18,42535067,42535116,42535115,42535116,50,-,TGCTTATCCATTTTACAGGTGTAGCAATGATGCAAATAGTCAGCTGCCCG,"Exon (Tcerg1-209/Tcerg1, exon 6 of 22)",18,42511487,42575793,64307,1,Tcerg1-209,23580,Tcerg1-209;Tcerg1-203;Tcerg1-201;Tcerg1-202;Tcerg1-208;Tcerg1-204;Tcerg1-205,Tcerg1;Tcerg1;Tcerg1;Tcerg1;Tcerg1;Tcerg1;Tcerg1,0;0;0;0;0;0;-1220,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,12,56070,ENSMUSG00000024498,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9443,cg12385146,0.00000264,0.0000085,0.310136909,0.756665237,gain,ns,-0.0000276,0.0000144,-1.915014121,0.05641076,neg,ns,-0.010300593,0.004228839,-2.435797236,0.015422161,neg,ns,1.81185477,0.000595712,0.000145429,4.096230645,0.0000537,pos,ns,0.798675446,Gm48909,Gm48909_Intron,14,48753304,48753353,48753304,48753305,50,+,CGCTGCTCAGAGAATGAAAAGATGTCTGGACTTAAGCTGTTTACCAACTG,"Intron (Otx2os1-206/Otx2os1-206, intron 2 of 4)",14,48695601,48695981,381,2,Gm48909-201,-57323,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,8,105245868,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
906,cg21150488,-0.0000161,0.00000923,-1.747032052,0.081622075,loss,ns,0.00003,0.0000157,1.914722267,0.056448141,pos,ns,0.018598949,0.004594824,4.047804886,0.0000654,pos,ns,4.184719289,-0.000718259,0.000158016,-4.545496499,0.00000787,neg,ns,0.223627931,Vcpip1,Vcpip1_Exon,1,9745707,9745756,9745707,9745708,50,+,CGAATACACTGTAAATATGGAGGAATGTTGAATTCTCTGGCTATACTTTC,"Exon (Vcpip1-201/Vcpip1, exon 1 of 3)",1,9718622,9748382,29761,2,Vcpip1-201,2626,Vcpip1-201,Vcpip1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,70675,ENSMUSG00000045210,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13353,cg08591301,-0.00000314,0.00000319,-0.98471167,0.325533633,loss,ns,0.0000104,0.00000542,1.914686329,0.056452746,pos,ns,0.004100951,0.001588364,2.581870758,0.010285398,pos,ns,1.987778904,-0.000113902,0.0000546,-2.085209406,0.037868113,neg,ns,0.936855145,Gm49657,Gm49657_Intergenic_downstream,16,70299214,70299263,70299214,70299215,50,+,CGGCAAAGTACAAAATGGTAATTAAAAATTTCTAGTTCAGTGCGAGGCAC,Distal Intergenic,16,70285257,70285681,425,1,Gm49657-201,13957,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23627,cg25673812,-0.0000286,0.00000796,-3.594073795,0.000378558,loss,ns,0.0000259,0.0000135,1.914611801,0.056462296,pos,ns,-0.001802988,0.003961653,-0.455110105,0.649348596,neg,ns,0.187522094,-0.000101343,0.000136241,-0.743849774,0.457530786,neg,ns,0.530878988,Hs6st3,Hs6st3_Intron,14,119358249,119358298,119358249,119358250,50,-,CGATGAGAGGGAAGCTTGATTTGATTAATTATGCTTACAAGCTGTTAGAG,"Intron (Hs6st3-201/Hs6st3, intron 1 of 1)",14,119138341,119869815,731475,1,Hs6st3-201,219908,Hs6st3-201,Hs6st3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,5,50787,ENSMUSG00000053465,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4016,cg03013117,-0.00000679,0.00000625,-1.087557136,0.277635504,loss,ns,0.0000203,0.0000106,1.914504893,0.056475997,pos,ns,0.009681242,0.003109306,3.113634905,0.002020441,pos,ns,2.69455392,-0.000316148,0.000106929,-2.956622447,0.003349151,neg,ns,0.89598862,Slmap,Slmap_Exon,14,26453577,26453626,26453577,26453578,50,+,CGCCACTCTTTGAAAGCAAGTGCTCTAATAAAGAAAGAAACACCTTTAAG,"Exon (Slmap-205/Slmap, exon 9 of 19)",14,26413168,26534931,121764,2,Slmap-203,81305,Slmap-203;Slmap-205;Slmap-215;Slmap-201;Slmap-202;Slmap-204;Slmap-212;Slmap-213;Slmap-216,Slmap;Slmap;Slmap;Slmap;Slmap;Slmap;Slmap;Slmap;Slmap,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,7,83997,ENSMUSG00000021870,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21019,cg19337633,0.00000302,0.0000047,0.642372662,0.521106016,gain,ns,0.0000153,0.00000798,1.914459228,0.05648185,pos,ns,0.007799262,0.002338475,3.33519104,0.000955939,pos,ns,3.019569816,-0.000207856,0.0000804,-2.584636154,0.010205039,neg,ns,0.897038519,Nfatc3,Nfatc3_Exon,8,106079608,106079657,106079608,106079609,50,-,CGGGAGACTTCAATAGATGATGGCCTTGGATCTCAGTATCCTTTAAAGAA,"Exon (Nfatc3-207/Nfatc3, exon 2 of 4)",8,106058840,106092576,33737,1,Nfatc3-207,20768,Nfatc3-207;Nfatc3-206;Nfatc3-202;Nfatc3-203;Nfatc3-201,Nfatc3;Nfatc3;Nfatc3;Nfatc3;Nfatc3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,18021,ENSMUSG00000031902,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5262,cg01634038,0.0000734,0.0000087,8.441228875,1.22E-15,gain,yes,-0.0000283,0.0000148,-1.914422285,0.056486586,neg,ns,0.000690707,0.004329117,0.159549065,0.873340207,pos,ns,0.058816545,0.0000612,0.000148878,0.411212864,0.681200585,pos,ns,0.149681798,Tlx3,Tlx3_fiveUTR,11,33203564,33203613,33203612,33203613,50,-,TGCCAAGAGTGCGCGGGCCCGACAGGCTCTGTGTCATCTTTCTTGAACCG,Promoter (<=1kb),11,33200752,33203589,2838,2,Tlx3-201,0,Tlx3-201,Tlx3,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,20,27140,ENSMUSG00000040610,conserved gene but different region,11,33202715,33203697,983,*,983,96,0.695829095,0.806819251,0.097660224,1.02E-71,CpGisland,TRUE,NA,NRS
6422,cg14812813,0.00000372,0.00000264,1.408308694,0.160041777,gain,ns,0.00000859,0.00000449,1.914413845,0.056487668,pos,ns,0.003785393,0.001315218,2.87814875,0.004278073,pos,ns,2.368751855,-0.000159177,0.0000452,-3.519263271,0.000497584,neg,ns,0.930688153,Stxbp5l,Stxbp5l_Exon,16,37186665,37186714,37186665,37186666,50,-,CGGATCCGTTTCGTTAAATCAGGATAAAAGTTAGACAGGCCACGCATGCA,"Exon (Stxbp5l-206/Stxbp5l, exon 20 of 28)",16,37114942,37384923,269982,2,Stxbp5l-206,198209,Stxbp5l-206;Stxbp5l-205;Stxbp5l-204;Stxbp5l-203;Stxbp5l-201;Stxbp5l-209,Stxbp5l;Stxbp5l;Stxbp5l;Stxbp5l;Stxbp5l;Stxbp5l,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,207227,ENSMUSG00000022829,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25572,cg19573023,-0.0000012,0.0000097,-0.12359947,0.901712511,loss,ns,0.0000316,0.0000165,1.914408981,0.056488291,pos,ns,-0.002087843,0.00482863,-0.432388234,0.665759894,neg,ns,0.176682371,0.000313144,0.000166056,1.885770799,0.060260655,pos,ns,0.786494083,Jag1,Jag1_Intergenic_upstream,2,137248470,137248519,137248470,137248471,50,+,CGTTGCTGACGCATTTCAAACAGACAGTTGGTAATATTTTGAAGCTTTCA,Distal Intergenic,2,137081456,137116644,35189,2,Jag1-201,-131826,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,16,16449,ENSMUSG00000027276,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10062,cg15566115,0.0000749,0.00000494,15.15663794,3.27E-39,gain,yes,-0.0000161,0.00000839,-1.914250521,0.056508608,neg,ns,0.001947156,0.002458703,0.791944237,0.428998763,pos,ns,0.36754396,0.00000345,0.0000846,0.040861013,0.967433002,pos,ns,0.131947464,Dhx15,Dhx15_Intergenic_downstream,5,52115450,52115499,52115450,52115451,50,+,CGACAGCCCGCAGCCCGCCATGCTCTGGATGCAAATAAAATGAGGAAAGA,Distal Intergenic,5,52153324,52157803,4480,2,Dhx15-206,42304,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,14,13204,ENSMUSG00000029169,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
9755,cg14341218,0.000147019,0.0000193,7.612867964,3.26E-13,gain,yes,-0.0000628,0.0000328,-1.914221202,0.056512368,neg,ns,0.022778851,0.009611712,2.369905686,0.018404576,pos,ns,1.735074174,-0.000641961,0.000330546,-1.94212181,0.053027908,neg,ns,0.314000495,Trps1,Trps1_Exon,15,50661460,50661509,50661508,50661509,50,+,GGACTGGCTGCTGAGCAGAATGGCTTTTAGTCAATGAACCCTGGGCTTCG,"Exon (Trps1-202/Trps1, exon 6 of 6)",15,50654752,50889691,234940,2,Trps1-202,228182,Trps1-202;Trps1-206;Trps1-204;Trps1-205;Trps1-207;Trps1-201,Trps1;Trps1;Trps1;Trps1;Trps1;Trps1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,36,83925,ENSMUSG00000038679,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14485,cg04733387,0.0000012,0.00000267,0.448013579,0.654456334,gain,ns,0.00000869,0.00000454,1.914131522,0.056523869,pos,ns,0.003556325,0.001330493,2.672938201,0.007917021,pos,ns,2.101438213,-0.000131696,0.0000458,-2.878256238,0.004276654,neg,ns,0.947987264,Ptprd,Ptprd_threeUTR,4,75942016,75942065,75942064,75942065,50,-,AATTACAAAATTATACATAACTACACGTACATAGGTAAATAATAGCACCG,3' UTR,4,75941238,76449980,508743,2,Ptprd-206,507915,Ptprd-206;Ptprd-204;Ptprd-213;Ptprd-220;Ptprd-203;Ptprd-217;Ptprd-218;Ptprd-219;Ptprd-201,Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,8,32,19266,ENSMUSG00000028399,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20678,cg02315120,-0.0000113,0.00000801,-1.407085803,0.160403738,loss,ns,-0.0000261,0.0000136,-1.914104444,0.056527342,neg,ns,-0.004632245,0.003988484,-1.161404911,0.246370747,neg,ns,0.60841086,-0.000077,0.000137164,-0.561436209,0.574905842,neg,ns,0.817370363,Dab1,Dab1_Intron,4,104452806,104452855,104452806,104452807,50,+,CGAGCTCTCTATCTTTGGAAATGTTCTAGCAGAGACTGGATAGCCATCTG,"Intron (Dab1-202/Dab1, intron 3 of 9)",4,103619665,104680382,1060718,1,Dab1-202,833141,Dab1-202;Dab1-206;Dab1-207;Dab1-203,Dab1;Dab1;Dab1;Dab1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,13,13131,ENSMUSG00000028519,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22493,cg09563729,0.0000778,0.000014,5.565668358,5.66E-08,gain,yes,-0.0000455,0.0000238,-1.914067817,0.05653204,neg,ns,0.002612795,0.006958573,0.375478598,0.707561347,pos,ns,0.1502359,-0.000123273,0.000239305,-0.515129604,0.606829575,neg,ns,0.599461896,Gm12830,Gm12830_Intron,4,114841550,114841599,114841598,114841599,50,+,TGCTTACACCTGACTAAATCATCAGGCTGAAATCGGAGCCGACTCCCACG,"Intron (Gm12830-201/Gm12830, intron 1 of 3)",4,114821722,114856166,34445,1,Gm12830-201,19828,Gm12830-201,Gm12830,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,26,433746,ENSMUSG00000055198,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
22319,cg27542366,-0.0000182,0.00000737,-2.470275494,0.014038829,loss,ns,-0.000024,0.0000125,-1.913994212,0.056541483,neg,ns,-0.007602067,0.003668091,-2.072485726,0.039046429,neg,ns,1.408418675,-0.000219165,0.000126145,-1.737399658,0.083309821,neg,ns,0.053142915,Arntl,Arntl_fiveUTR,7,113207434,113207483,113207482,113207483,50,-,GGGGGTTGGGCACAGCGATTGGTGGGCGGGGGGCCGGGCCTGGGCCGGCG,Promoter (<=1kb),7,113207465,113314126,106662,1,Arntl-201,0,Arntl-201;Arntl-203;Arntl-204,Arntl;Arntl;Arntl,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,6,11865,ENSMUSG00000055116,conserved gene but different region,7,113207255,113208466,1212,*,1212,121,0.691419142,0.844647948,0.099834984,1.89E-91,CpGisland,TRUE,U1,Pr-A
23562,cg00562080,-0.0000162,0.0000122,-1.331380197,0.184042153,loss,ns,0.0000395,0.0000206,1.913979499,0.056543371,pos,ns,-0.013847813,0.006049268,-2.289171614,0.022741478,neg,ns,1.643181309,0.0004647,0.000208034,2.233772856,0.02621104,pos,ns,0.392526843,Med13l,Med13l_Intergenic_downstream,5,118944597,118944646,118944597,118944598,50,-,CGGCTCCCTGCAGGATTCATTTAATCTCTTGGGGATTTACTGACCTTCAA,Distal Intergenic,5,118750387,118763916,13530,1,Med13l-206,194259,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,16,76199,ENSMUSG00000018076,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17477,cg10084308,-0.000000556,0.00000452,-0.122973447,0.902207811,loss,ns,-0.0000147,0.00000768,-1.913565066,0.056596563,neg,ns,0.000553407,0.002249855,0.24597436,0.80586486,pos,ns,0.093737781,-0.0000388,0.0000774,-0.500910094,0.616789868,neg,ns,0.025638792,Crebzf,Crebzf_Exon,7,90444024,90444073,90444072,90444073,50,+,AGGATAAGGTGTCGGTGGAGTTCTGCTCGGCGTGCGCCCGGAAGGCGTCG,"Exon (Crebzf-201/Crebzf, exon 1 of 1)",7,90442729,90446104,3376,1,Crebzf-201,1295,Crebzf-201;Crebzf-203;Crebzf-204;Crebzf-205;Crebzf-202;Crebzf-208;Crebzf-207;Crebzf-209;Crebzf-206,Crebzf;Crebzf;Crebzf;Crebzf;Crebzf;Crebzf;Crebzf;Crebzf;Crebzf,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,9,233490,ENSMUSG00000051451,conserved gene and region,7,90443049,90444118,1070,*,1070,137,0.710280374,1.028961703,0.128037383,4.26E-120,CpGisland,TRUE,U1,Pr-A
4814,cg14923015,0.00000613,0.00000217,2.829094398,0.004972293,gain,ns,-0.00000704,0.00000368,-1.913534304,0.056600513,neg,ns,-0.003727564,0.001077866,-3.458281593,0.000619675,neg,ns,3.207836114,0.000074,0.0000371,1.996540595,0.046749336,pos,ns,0.94762084,Mest,Mest_Exon,6,30742706,30742755,30742754,30742755,50,+,CTTTCCTCAGAGACCACATCACTATTCCATATTTGAGCAGGCCAGCATCG,"Exon (Mest-207/Mest, exon 5 of 5)",6,30733454,30742836,9383,1,Mest-207,9252,Copg2-201;Mest-201;Mest-209;Mest-207;Mest-210;Mest-211;Mest-202;Mest-204;Mest-205;Mest-203;Mest-208,Copg2;Mest;Mest;Mest;Mest;Mest;Mest;Mest;Mest;Mest;Mest,153984;19159;10738;0;0;0;0;4651;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,17294,ENSMUSG00000051855,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21766,cg10593080,0.0000652,0.00000644,10.13160962,5.01E-21,gain,yes,-0.0000209,0.0000109,-1.913495542,0.05660549,neg,ns,0.000658673,0.003202877,0.205650411,0.837198978,pos,ns,0.077171311,0.000126638,0.000110147,1.149723091,0.251144145,pos,ns,0.14543902,Syt1,Syt1_fiveUTR,10,109010930,109010979,109010978,109010979,50,+,GAGCATCCCCACACTGCAGCTTCTCCAGGAATCCCTCCAGTGAGGAGGCG,Promoter (<=1kb),10,108497650,109010975,513326,2,Syt1-202,0,Syt1-202;Syt1-201;Syt1-206;Syt1-204;Syt1-203,Syt1;Syt1;Syt1;Syt1;Syt1,0;0;-1819;0;-1830,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,5,20979,ENSMUSG00000035864,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
135,cg01975510,-0.000000975,0.00000486,-0.200625458,0.841123009,loss,ns,-0.0000158,0.00000826,-1.913371419,0.056621432,neg,ns,-0.003468686,0.002419675,-1.433533572,0.152713217,neg,ns,0.816123373,0.0000561,0.0000832,0.674238718,0.500662018,pos,ns,0.857975631,Kdm2a,Kdm2a_Exon,19,4324733,4324782,4324781,4324782,50,-,TCAACTTCAGACAGCTCCTTTTTGCCGCTGGGATTGTTCTCCTTTTCCCG,"Exon (Kdm2a-201/Kdm2a, exon 17 of 21)",19,4314419,4398285,83867,2,Kdm2a-201,73503,Kdm2a-201;Kdm2a-202;Kdm2a-213;Kdm2a-211;Kdm2a-207;Kdm2a-214;Kdm2a-212;Kdm2a-210,Kdm2a;Kdm2a;Kdm2a;Kdm2a;Kdm2a;Kdm2a;Kdm2a;Kdm2a,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,21,30,225876,ENSMUSG00000054611,conserved gene and region,19,4324711,4324995,285,*,285,19,0.621052632,0.696373457,0.066666667,1.66E-11,CpGisland,TRUE,U10,Tr-S
19048,cg19439043,0.000340363,0.0000292,11.63881131,3.21E-26,gain,yes,-0.0000951,0.0000497,-1.913343337,0.056625039,neg,ns,-0.022720254,0.014554955,-1.560997905,0.119544504,neg,ns,0.922470384,0.000566402,0.000500544,1.131574199,0.258688077,pos,ns,0.412058322,Cdk12,Cdk12_Intergenic_downstream,11,98284399,98284448,98284447,98284448,50,-,TCTGTGGAGCAATCTCAGAGAGCAGTAAGGTGTGACGCGAGGCTCTGCCG,Distal Intergenic,11,98263502,98268011,4510,1,Cdk12-204,20946,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,25,69131,ENSMUSG00000003119,conserved gene but different region,11,98284434,98284521,88,*,88,9,0.647727273,1.012787724,0.102272727,0.000000303,CpGisland,TRUE,U11,Tr-P
12846,cg18985384,-0.00000408,0.00000505,-0.806804044,0.420397933,loss,ns,0.0000164,0.00000858,1.913208353,0.05664238,pos,ns,-0.002485934,0.002514403,-0.988677747,0.32359188,neg,ns,0.490002385,0.0000576,0.0000865,0.666105133,0.505839278,pos,ns,0.942520829,Gm11403,Gm11403_Intergenic_downstream,4,67301304,67301353,67301304,67301305,50,-,CGCTGAGCTAATGAAGGCACTCAGCCAGGCTCTGCCACCTTACTAATTTG,Distal Intergenic,4,67165479,67165847,369,1,Gm11403-201,135874,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25999,cg16000161,-0.00000375,0.00000329,-1.140524636,0.254948159,loss,ns,0.0000107,0.00000558,1.913207959,0.056642431,pos,ns,0.004375067,0.00163586,2.674475361,0.007881648,pos,ns,2.10338294,-0.000132884,0.0000563,-2.362079653,0.018790518,neg,ns,0.933808692,Ammecr1,Ammecr1_threeUTR,X,142853154,142853203,142853154,142853155,50,-,CGCATGACCAGTCACGTGACCTGCTCAAGATTGATTAGCACCGTTAAATA,3' UTR,20,142851146,142966728,115583,2,Ammecr1-201,113525,Ammecr1-201,Ammecr1,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,8,56068,ENSMUSG00000042225,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10209,cg21209951,0.00000672,0.00000123,5.458089636,9.87E-08,gain,yes,-0.000004,0.00000209,-1.913186052,0.056645246,neg,ns,0.000130065,0.000613121,0.212135097,0.832141049,pos,ns,0.079803054,-0.0000034,0.0000211,-0.161035439,0.872170382,neg,ns,0.019661006,Hoxa10,Hoxa10_fiveUTR,6,52240666,52240715,52240714,52240715,50,+,TTTTACATCTAAGAAATCGCTGCAAAACCCCAGCCGGGTTTATAGCGGCG,Promoter (<=1kb),6,52231922,52240854,8933,2,Hoxa10-201,139,Hoxa10-201;Hoxa10-204;Hoxa11-201;Hoxa11-202,Hoxa10;Hoxa10;Hoxa11;Hoxa11,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,7,15395,ENSMUSG00000000938,conserved gene and region,6,52240700,52240829,130,*,130,12,0.576923077,1.109530583,0.092307692,4.74E-09,CpGisland,TRUE,U13,Hc-P
27560,cg22454980,-0.00000389,0.00000106,-3.654224963,0.000302837,loss,ns,-0.00000346,0.00000181,-1.913130794,0.056652346,neg,ns,-0.001944165,0.00052974,-3.670033417,0.000285444,neg,ns,3.544478588,0.0000343,0.0000182,1.88277061,0.060667727,pos,ns,0.979978739,Tshz2,Tshz2_threeUTR,2,169913061,169913110,169913061,169913062,50,+,CGTCAATCTGTCATTAAACATGTTATCAAATGATGATAAGTGTATGCTTC,3' UTR,2,169633013,169913093,280081,1,Tshz2-202,280048,Tshz2-202;Tshz2-203;Tshz2-205;Tshz2-204,Tshz2;Tshz2;Tshz2;Tshz2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,8,30,228911,ENSMUSG00000047907,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6937,cg15689830,0.00000406,0.00000248,1.639380483,0.102148421,gain,ns,-0.00000806,0.00000421,-1.913053132,0.056662327,neg,ns,-0.000555736,0.001234016,-0.450347627,0.652774589,neg,ns,0.18523676,0.0000142,0.0000424,0.333664826,0.738858077,pos,ns,0.935678365,Rev3l,Rev3l_threeUTR,10,39846170,39846219,39846170,39846171,50,-,CGTGTCCGTGGAAATCTCCAAATGTTAGAACAGCTGGACCTGATTGGGAA,3' UTR,10,39732118,39875211,143094,1,Rev3l-201,114052,Rev3l-201;Rev3l-204;Rev3l-207;Rev3l-205;Rev3l-206,Rev3l;Rev3l;Rev3l;Rev3l;Rev3l,0;0;0;0;17896,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,7,19714,ENSMUSG00000019841,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27799,cg26770198,-0.0000311,0.00000529,-5.871188716,1.11E-08,loss,yes,0.0000172,0.00000899,1.91304816,0.056662966,pos,ns,-0.005887878,0.002633673,-2.235615132,0.026088659,neg,ns,1.583548237,0.000235909,0.0000906,2.604662062,0.009639679,pos,ns,0.874338681,Gpatch2,Gpatch2_Intergenic_downstream,1,187378227,187378276,187378227,187378228,50,+,CGGTTCACTCAAGTAAAGCAGTTTGTATGGTAATTAAGGGAGCATTTTTC,Distal Intergenic,1,187226180,187351427,125248,1,Gpatch2-208,152047,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,10,67769,ENSMUSG00000039210,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
15173,cg13888600,0.000011,0.00000416,2.641285305,0.008677881,gain,ns,0.0000135,0.00000706,1.913044614,0.056663422,pos,ns,0.006545771,0.002068156,3.165027563,0.001704695,pos,ns,2.768353337,-0.000129629,0.0000711,-1.822585072,0.069329471,neg,ns,0.072653061,Polg,Polg_Exon,7,79505285,79505334,79505333,79505334,50,+,GTTATCTAGCTGTATGAGTGCCACAGAGCCGTCATAAAGCTAGATAACCG,"Exon (Mir9-3-201/Mir9-3-201, exon 1 of 1)",7,79446231,79466362,20132,2,Polg-201,-38923,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,16,18975,ENSMUSG00000039176,mapped to different genes,7,79505314,79505650,337,*,337,24,0.65578635,0.662407862,0.071216617,4.85E-15,CpGisland,TRUE,NA,NRS
3284,cg00146174,-0.00000386,0.00000197,-1.955242772,0.051452681,loss,ns,0.00000641,0.00000335,1.912650222,0.056714131,pos,ns,0.002877565,0.000981383,2.932152895,0.003616827,pos,ns,2.441672306,-0.0000903,0.0000337,-2.674443101,0.007882389,neg,ns,0.94433581,Usp34,Usp34_Exon,11,23464303,23464352,23464303,23464304,50,+,CGTGACCTTCCACTCAGTCCAGACACAACAGTAGTCCTACATCAGGTCTA,"Exon (Usp34-208/Usp34, exon 68 of 80)",11,23306895,23490560,183666,1,Usp34-208,157408,Usp34-208;Usp34-205;Usp34-203;Usp34-206,Usp34;Usp34;Usp34;Usp34,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,13,14,17847,ENSMUSG00000056342,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7638,cg00191058,0.000149629,0.0000214,6.980108775,1.80E-11,gain,yes,-0.0000697,0.0000364,-1.912534521,0.056729014,neg,ns,0.070332775,0.010669152,6.592161968,1.86E-10,pos,ns,9.729403711,0.0000132,0.000366911,0.035922129,0.971367571,pos,ns,0.608931938,Zbtb20,Zbtb20_Intron,16,43537645,43537694,43537693,43537694,50,-,GTATAACTGATGAAATATCCCCAGAGGAGTATTGTAAATGTATCAAGACG,"Intron (Zbtb20-211/Zbtb20, intron 4 of 4)",16,42907542,43569781,662240,1,Zbtb20-211,630103,Zbtb20-211;Zbtb20-217;Zbtb20-204;Zbtb20-215;Zbtb20-201;Zbtb20-203;Zbtb20-214;Zbtb20-213;Zbtb20-219;Zbtb20-216;Zbtb20-208;Zbtb20-207;Zbtb20-220;Zbtb20-206;Zbtb20-221;Zbtb20-202;Zbtb20-205,Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,98,56490,ENSMUSG00000022708,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11281,cg19833686,0.00000284,0.0000108,0.261968601,0.793519633,gain,ns,0.0000352,0.0000184,1.912464,0.056738087,pos,ns,0.002480357,0.005397183,0.459565056,0.64615056,pos,ns,0.189666275,-0.000136407,0.000185609,-0.734919574,0.462944061,neg,ns,0.776351761,Gria1,Gria1_Exon,11,57317710,57317759,57317758,57317759,50,-,CTACATCCTGATCGGAGGACTTGGACTAGCCATGCTGGTTGCCTTAATCG,"Exon (Gria1-201/Gria1, exon 15 of 16)",11,57011810,57330244,318435,1,Gria1-201,305900,Gria1-201;Gria1-202;Gria1-204,Gria1;Gria1;Gria1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,13,14799,ENSMUSG00000020524,conserved gene and region,11,57317758,57317841,84,*,84,8,0.547619048,1.28,0.095238095,0.00000318,CpGisland,TRUE,U15,NS
17246,cg17596554,0.0000247,0.00000457,5.408690601,0.000000127,gain,yes,0.0000149,0.00000777,1.911910566,0.056809334,pos,ns,0.004886099,0.002275834,2.146948497,0.032572852,pos,ns,1.487144219,0.000071,0.0000783,0.907087869,0.365064882,pos,ns,0.077618842,Nog,Nog_Promoter,11,89302541,89302590,89302541,89302542,50,-,CGTTGGCACCGGTTTGTCTGTCTCGCAGGGTCCAAGCCTTTAAATTTCCT,Promoter (<=1kb),11,89300638,89302332,1695,2,Nog-201,-258,Nog-201,Nog,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,36,18121,ENSMUSG00000048616,conserved gene but different region,11,89301879,89302565,687,*,687,88,0.736535662,0.94472833,0.128093159,2.20E-77,CpGisland,TRUE,U3,Pr-B
22718,cg27507315,-0.00000799,0.00000643,-1.243207084,0.214730943,loss,ns,0.0000209,0.0000109,1.911904295,0.056810142,pos,ns,0.007522733,0.003198329,2.35208252,0.019293864,pos,ns,1.714580794,-0.000410399,0.00010999,-3.731229731,0.00022659,neg,ns,0.821208105,Sox6,Sox6_Intron,7,115825016,115825065,115825016,115825017,50,+,CGCCATTCAGGCCAGGTCCATTCTGTCATTTATAAAGATAGTTTCTTCTG,"Intron (Sox6-210/Sox6, intron 2 of 15)",7,115470872,116031047,560176,2,Sox6-210,205982,Sox6-210;Sox6-201;Sox6-202;Sox6-204;Sox6-205;Sox6-203;Sox6-212;Sox6-206;Sox6-209;Sox6-214;Sox6-211;Sox6-208,Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,37,57,20679,ENSMUSG00000051910,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23482,cg12742267,-0.00000106,0.00000323,-0.328074092,0.743077116,loss,ns,-0.0000105,0.00000549,-1.911759107,0.056828845,neg,ns,0.001710273,0.00160735,1.064032611,0.288142029,pos,ns,0.54039339,-0.000116419,0.0000553,-2.106112732,0.03599828,neg,ns,0.920303663,Med13l,Med13l_Exon,5,118593477,118593526,118593477,118593478,50,-,CGTCGTGATGTCAAACCAGATTGCAAAGAGTTATGGATATTCTGGTGGGG,"Exon (Med13l-203/Med13l, exon 2 of 5)",5,118560679,118720114,159436,1,Med13l-203,32798,Med13l-203;Med13l-201;Med13l-202;Med13l-204,Med13l;Med13l;Med13l;Med13l,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,16,76199,ENSMUSG00000018076,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18019,cg10355276,0.00000314,0.0000054,0.581444401,0.561363513,gain,ns,0.0000175,0.00000917,1.911663907,0.056841112,pos,ns,0.005919302,0.002686626,2.203247841,0.028312556,pos,ns,1.548020916,-0.00000648,0.0000924,-0.070166396,0.944106462,neg,ns,0.921192074,Pola1,Pola1_Intron,X,93310474,93310523,93310474,93310475,50,+,CGCTTCCAATTCCCGGCCAGCCACTGGATCAGCTTCAGCGGTATCTAACA,"Intron (Pola1-201/Pola1, intron 36 of 36)",20,93304767,93632155,327389,2,Pola1-201,321632,Pola1-201,Pola1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,59,62,18968,ENSMUSG00000006678,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27787,cg09184119,-0.00000248,0.00000181,-1.369017571,0.17198488,loss,ns,0.00000588,0.00000308,1.911643299,0.056843768,pos,ns,0.003106213,0.000901332,3.446248482,0.000646859,pos,ns,3.189190106,-0.000100761,0.000031,-3.250708094,0.001277821,neg,ns,0.955497374,Gm19058,Gm19058_Intergenic_downstream,1,186988758,186988807,186988806,186988807,50,-,ATGGACAAGTCCTGCTTTTCAAAAAGACCGCGGGAAGCTTGACAGTAACG,Distal Intergenic,1,187006007,187006604,598,2,Gm19058-201,17846,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,4,100418181,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27432,cg20280916,-0.00000687,0.00000292,-2.356461955,0.019071924,loss,ns,-0.00000947,0.00000495,-1.91157631,0.056852401,neg,ns,-0.000142216,0.001451615,-0.097971118,0.922018542,neg,ns,0.035260345,-0.0000127,0.0000499,-0.254247725,0.799472744,neg,ns,0.947292069,Pbx1,Pbx1_threeUTR,1,168158599,168158648,168158647,168158648,50,-,AAGGAGACTCTTATTGTGTTTGCTGATTGCTTCGACCTCCAGTCTGACCG,3' UTR,1,168119364,168432270,312907,2,Pbx1-208,273622,Pbx1-208;Pbx1-205;Pbx1-206;Pbx1-203;Pbx1-201,Pbx1;Pbx1;Pbx1;Pbx1;Pbx1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,84,18514,ENSMUSG00000052534,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25322,cg24387002,-0.00000336,0.00000442,-0.760785907,0.447363235,loss,ns,0.0000144,0.00000751,1.911378135,0.056877948,pos,ns,0.001496681,0.00220069,0.680096304,0.496951055,pos,ns,0.303686383,-0.0000219,0.0000757,-0.289551269,0.772353112,neg,ns,0.892871973,Runx3,Runx3_Intergenic_upstream,4,135026290,135026339,135026290,135026291,50,+,CGACATGTAATTTACACTCTACCCGAGAAATCAAAGGTCATGTCTGAAAT,Distal Intergenic,4,135120652,135177990,57339,1,Runx3-201,-94313,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,6,12399,ENSMUSG00000070691,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
17972,cg14220710,-0.0000528,0.0000132,-3.994928637,0.0000809,loss,ns,0.0000429,0.0000225,1.911365246,0.056879609,pos,ns,0.032063963,0.006578881,4.873771335,0.00000175,pos,ns,5.756795288,-0.001562376,0.000226247,-6.905614821,2.84E-11,neg,yes,0.748507082,Arx,Arx_Intergenic_upstream,X,93033922,93033971,93033922,93033923,50,-,CGGCATGTTTGTCAATGTGCTGTATAATTATTAATTTGTTCATTGAAGCA,Distal Intergenic,20,93286445,93288382,1938,1,Arx-203,-252523,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,32,11878,ENSMUSG00000035277,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25660,cg15197716,-0.00000484,0.0000057,-0.850139275,0.395903769,loss,ns,0.0000185,0.00000968,1.91132533,0.056884756,pos,ns,0.008573423,0.00283586,3.023218176,0.00270983,pos,ns,2.567057996,-0.000277647,0.0000975,-2.846933661,0.004708783,neg,ns,0.900945251,Slc15a5,Slc15a5_Intergenic_upstream,6,138092763,138092812,138092763,138092764,50,+,CGTTTGGCTTATTCATAATTTTATGAGCTATAAATTTTATTGCATTGTGA,Distal Intergenic,6,137983590,138079916,96327,2,Slc15a5-206,-12847,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,2,277898,ENSMUSG00000044378,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4635,cg17648766,-0.000121529,0.0000123,-9.87384868,3.59E-20,loss,yes,-0.00004,0.0000209,-1.911321913,0.056885197,neg,ns,-0.012019332,0.006125904,-1.962050492,0.050651014,neg,ns,1.295411858,0.000102922,0.000210669,0.48854615,0.625508458,pos,ns,0.663572708,Mecom,Mecom_Intron,3,30005099,30005148,30005099,30005100,50,+,CGTCCTGGAAGCAGTTAAAACTTTATAAGGTAAAGCACAAATGAGAACAA,"Intron (Mecom-206/Mecom, intron 2 of 14)",3,29951296,30013156,61861,2,Mecom-206,8008,Mecom-206;Mecom-212;Mecom-202;Mecom-203;Mecom-210;Mecom-213;Mecom-207;Mecom-208;Mecom-205;Mecom-216;Mecom-214,Mecom;Mecom;Mecom;Mecom;Mecom;Mecom;Mecom;Mecom;Mecom;Mecom;Mecom,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,80,14013,ENSMUSG00000027684,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4294,cg27211439,-0.0000151,0.00000724,-2.087544706,0.03765518,loss,ns,0.0000235,0.0000123,1.911110192,0.056912503,pos,ns,0.003731654,0.003602618,1.035817072,0.301094808,pos,ns,0.521296733,-0.000195306,0.000123894,-1.576398749,0.115953844,neg,ns,0.836943392,Zfp800,Zfp800_Exon,6,28243382,28243431,28243382,28243383,50,-,CGACGAGTTTCATAAGTGCAAAGAGGACACTTGTAGAATTTAACATAAAT,"Exon (Zfp800-202/Zfp800, exon 5 of 6)",6,28239927,28261911,21985,2,Zfp800-202,18480,Zfp800-202;Zfp800-201;Zfp800-203;Zfp800-204;Zfp800-205,Zfp800;Zfp800;Zfp800;Zfp800;Zfp800,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,10,627049,ENSMUSG00000039841,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15699,cg11297878,-0.00000679,0.00000507,-1.340058065,0.181207852,loss,ns,0.0000165,0.00000861,1.911021177,0.056923987,pos,ns,0.005934826,0.002523719,2.351619054,0.019317483,pos,ns,1.714049455,-0.000234595,0.0000868,-2.702999332,0.007250571,neg,ns,0.895091668,Agfg1,Agfg1_Exon,1,82880020,82880069,82880068,82880069,50,+,CAAATGCAGATTTTGCAAACTTTGATGCATTTGGACAGTCTAGTGGTTCG,"Exon (Agfg1-206/Agfg1, exon 6 of 13)",1,82839483,82901182,61700,1,Agfg1-206,40537,Agfg1-206;Agfg1-202;Agfg1-208;Agfg1-201;Agfg1-205;Agfg1-204;Agfg1-207;Agfg1-203,Agfg1;Agfg1;Agfg1;Agfg1;Agfg1;Agfg1;Agfg1;Agfg1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,15463,ENSMUSG00000026159,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11675,cg20689344,-0.00000492,0.00000226,-2.175493884,0.030348371,loss,ns,0.00000733,0.00000384,1.910868798,0.05694365,pos,ns,-0.000156608,0.001124522,-0.139266114,0.889330297,neg,ns,0.050936912,0.0000148,0.0000387,0.383457572,0.701643361,pos,ns,0.955002529,Myo9a,Myo9a_Exon,9,59875184,59875233,59875232,59875233,50,+,TATCATTTGGTCAAGCAGGTTGCCAGACCGGCCCATAAAAAGAAAGCTCG,"Exon (Myo9a-205/Myo9a, exon 27 of 43)",9,59750896,59928866,177971,1,Myo9a-203,124288,Myo9a-203;Myo9a-205;Myo9a-206;Myo9a-207,Myo9a;Myo9a;Myo9a;Myo9a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,8,270163,ENSMUSG00000039585,conserved gene and region,9,59875212,59875313,102,*,102,9,0.529411765,1.35,0.088235294,0.00000109,CpGisland,TRUE,NA,NRS
5155,cg24035747,-0.00000408,0.00000298,-1.367739119,0.172384448,loss,ns,0.00000968,0.00000507,1.91066108,0.056970463,pos,ns,0.003747363,0.00148401,2.52516097,0.012062974,pos,ns,1.918545615,-0.000105431,0.000051,-2.065859459,0.039672371,neg,ns,0.943046647,Mfn1,Mfn1_Exon,3,32561427,32561476,32561475,32561476,50,-,GAATTACAGTAATGTGTTACGGCTTGGGCCCCTCGCAGGAGTGTATCTCG,"Exon (Mfn1-201/Mfn1, exon 10 of 18)",3,32529465,32579239,49775,1,Mfn1-201,31962,Mfn1-201;Mfn1-202;Mfn1-205;Mfn1-209;Mfn1-207;Mfn1-208,Mfn1;Mfn1;Mfn1;Mfn1;Mfn1;Mfn1,0;0;0;0;-70;-1432,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,67414,ENSMUSG00000027668,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11405,cg00055619,0.000013,0.00000405,3.219508513,0.001420238,gain,ns,0.0000132,0.00000688,1.910656852,0.056971009,pos,ns,0.004953595,0.00201669,2.456299687,0.01458572,pos,ns,1.836072113,-0.0000498,0.0000694,-0.717595914,0.473546865,neg,ns,0.462267646,Zic3,Zic3_Exon,X,58033403,58033452,58033403,58033404,50,+,CGCTTTGCCAACAGCAGCGACCGTAAGAAGCACATGCATGTGCATACCTC,"Exon (Zic3-201/Zic3, exon 2 of 3)",20,58030643,58036559,5917,1,Zic3-201,2760,Zic3-204;Zic3-201;Zic3-203;Zic3-202,Zic3;Zic3;Zic3;Zic3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,17,22773,ENSMUSG00000067860,conserved gene and region,X,58033387,58033635,249,*,249,20,0.546184739,1.096191944,0.080321285,1.23E-13,CpGisland,TRUE,U13,Hc-P
19258,cg04343139,-0.00000075,0.00000223,-0.336269654,0.736895033,loss,ns,0.00000723,0.00000379,1.910389997,0.057005471,pos,ns,0.002744897,0.001109465,2.474073089,0.013893402,pos,ns,1.857191408,-0.0000919,0.0000382,-2.407792159,0.016633132,neg,ns,0.940722946,Tnpo1,Tnpo1_Intron,13,98851383,98851432,98851431,98851432,50,-,GCAACATTCTCATTAAACAGGCAAGTATGAACAATCCAATGAAACATGCG,"Intron (Tnpo1-201/Tnpo1, intron 19 of 23)",13,98839019,98891040,52022,2,Tnpo1-201,39608,Tnpo1-201;Tnpo1-202;Tnpo1-206;Tnpo1-204,Tnpo1;Tnpo1;Tnpo1;Tnpo1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,9,238799,ENSMUSG00000009470,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12549,cg02873524,0.000147871,0.0000125,11.85924842,5.28E-27,gain,yes,-0.0000405,0.0000212,-1.910328189,0.057013455,neg,ns,0.011551689,0.006205884,1.861409242,0.063632747,pos,ns,1.196319329,-0.000447424,0.00021342,-2.096448507,0.036852693,neg,ns,0.092951284,Pappa,Pappa_fiveUTR,4,65124535,65124584,65124583,65124584,50,-,GTCGGACATGCGGCTCTGGAGTTGGGTGCTGCACCTGGGGCTGCTGAGCG,Promoter (<=1kb),4,65124174,65357509,233336,1,Pappa-201,361,Pappa-201,Pappa,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,5,18491,ENSMUSG00000028370,conserved gene but different region,4,65124410,65124914,505,*,505,69,0.754455446,0.969316791,0.136633663,4.66E-63,CpGisland,TRUE,U3,Pr-B
15307,cg18775232,-0.00000193,0.00000398,-0.485855639,0.627412757,loss,ns,0.0000129,0.00000676,1.910164752,0.057034573,pos,ns,0.003989313,0.001979818,2.01499028,0.044768661,pos,ns,1.349025898,-0.000140931,0.0000681,-2.069910706,0.039288667,neg,ns,0.922767955,Cul3,Cul3_Exon,1,80267217,80267266,80267265,80267266,50,+,ATAAGTCCTTCAATACGTTTCTTAATAACAACTGGACTTGGTAAGAATCG,"Exon (Cul3-201/Cul3, exon 16 of 16)",1,80264923,80340480,75558,2,Cul3-201,73214,Cul3-201;Cul3-202;Cul3-205;Cul3-204,Cul3;Cul3;Cul3;Cul3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,7,26554,ENSMUSG00000004364,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9392,cg08519802,0.000000854,0.00000625,0.136710732,0.891348187,gain,ns,0.0000203,0.0000106,1.910139065,0.057037893,pos,ns,0.011789517,0.003109362,3.791619628,0.000179877,pos,ns,3.745025034,-0.000356852,0.000106931,-3.337231108,0.000949193,neg,ns,0.887342623,Tenm3,Tenm3_Intron,8,48601028,48601077,48601028,48601029,50,+,CGTGTGTTCTGCTTTCCAATGAAAACCATAGCCAAATAAGCTTTCATTAA,"Intron (Tenm3-201/Tenm3, intron 2 of 28)",8,48227682,48674690,447009,2,Tenm3-201,73613,Tenm3-201;Tenm3-206,Tenm3;Tenm3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,39,23965,ENSMUSG00000031561,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1937,cg15708887,-0.00000186,0.00000117,-1.579661663,0.115204151,loss,ns,0.00000381,0.000002,1.909867757,0.057072965,pos,ns,0.001109737,0.000584656,1.898101871,0.058611369,pos,ns,1.232018136,-0.0000327,0.0000201,-1.626215195,0.104919956,neg,ns,0.974868321,Tfec,Tfec_Intergenic_downstream,6,16548312,16548361,16548312,16548313,50,-,CGTAATATACCTCAGTGAAATGAAGGTTAATTCTGATGTACAACCTGCAT,Distal Intergenic,6,16834692,16835263,572,2,Tfec-204,286951,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,19,23,21426,ENSMUSG00000029553,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19727,cg04175582,-0.0000117,0.00000662,-1.77127561,0.077497354,loss,ns,0.0000215,0.0000112,1.909201522,0.057159165,pos,ns,0.004547139,0.003295521,1.379793937,0.168644466,pos,ns,0.773027906,-0.000205661,0.000113333,-1.814665301,0.070541778,neg,ns,0.861931005,Stag1,Stag1_threeUTR,9,100953538,100953587,100953538,100953539,50,-,CGGAAGGACAGAACAGGAATGAACTACATGAAAGTGAGAACTGGAGTGAG,3' UTR,9,100643448,100958545,315098,1,Stag1-206,310090,Stag1-206;Stag1-201;Stag1-216;Stag1-203;Stag1-215;Stag1-214;Stag1-211;Stag1-217,Stag1;Stag1;Stag1;Stag1;Stag1;Stag1;Stag1;Stag1,0;0;0;0;0;0;0;-2182,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,15,20842,ENSMUSG00000037286,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8318,cg12253158,0.0000339,0.0000122,2.774920943,0.005856695,gain,ns,-0.0000396,0.0000207,-1.908918099,0.057195869,neg,ns,0.022028426,0.00607468,3.626269453,0.000336059,pos,ns,3.473584373,-0.000811041,0.000208908,-3.882292542,0.000126473,neg,ns,0.533803261,Zeb2,Zeb2_Exon,2,45001758,45001807,45001758,45001759,50,-,CGCAGTAGGGGCAGGTCAGCAGTTGGGCAAAAGCATCTGGAGTTCCAGGT,"Exon (Zeb2-212/Zeb2, exon 7 of 11)",2,44983632,45117395,133764,2,Zeb2-212,115588,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-227;Zeb2-216;Zeb2-229;Zeb2-218;Zeb2-222,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,21,158,24136,ENSMUSG00000026872,conserved gene but different region,2,45001704,45001759,56,*,56,7,0.607142857,1.375438597,0.125,0.00000289,CpGisland,TRUE,U12,Tr-I
25682,cg20133115,0.00000322,0.00000322,0.999913172,0.318132382,gain,ns,0.0000105,0.00000548,1.908576737,0.057240102,pos,ns,-0.000330771,0.001604123,-0.20620037,0.836769755,neg,ns,0.077394026,0.0000257,0.0000552,0.466477733,0.641201218,pos,ns,0.898473008,Lmo3,Lmo3_Intergenic_downstream,6,138323598,138323647,138323598,138323599,50,-,CGGGGATTGGAGCAGAGGGCATTCTCAGGCAGATTAATTTTTGACGATGG,Distal Intergenic,6,138364196,138421452,57257,2,Lmo3-207,97854,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,38,109593,ENSMUSG00000030226,mapped to different genes,6,138323542,138323599,58,*,58,9,0.672413793,1.395721925,0.155172414,6.08E-09,CpGisland,TRUE,U15,NS
7917,cg21630674,0.0000413,0.00000382,10.80400411,2.64E-23,gain,yes,-0.0000124,0.0000065,-1.908565522,0.057241555,neg,ns,-0.002582269,0.001903316,-1.356720914,0.175857042,neg,ns,0.754840235,0.00018745,0.0000655,2.863802194,0.004471363,pos,ns,0.885072588,Gtdc1,Gtdc1_Intron,2,44632741,44632790,44632789,44632790,50,+,CTTTGATGTCCCCACAAGAGTTTTTTGCCCGAAGGCTTTACCAATGCTCG,"Intron (Gtdc1-203/Gtdc1, intron 6 of 10)",2,44564412,44861622,297211,2,Gtdc1-203,228832,Gtdc1-203;Gtdc1-201;Gtdc1-205;Gtdc1-210;Gtdc1-204;Gtdc1-211,Gtdc1;Gtdc1;Gtdc1;Gtdc1;Gtdc1;Gtdc1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,43,227835,ENSMUSG00000036890,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13296,cg13768953,0.0000475,0.00000532,8.914687275,4.30E-17,gain,yes,-0.0000173,0.00000905,-1.90854995,0.057243574,neg,ns,0.003806229,0.002650044,1.436288992,0.15192849,pos,ns,0.818360777,-0.0000553,0.0000911,-0.607134567,0.544206038,neg,ns,0.56004975,Dlg4,Dlg4_Exon,11,70024072,70024121,70024120,70024121,50,-,GTCGGCTCGGAACAGATTCGCCTCCATGTGTCTCTGCGTGGTACGTGCCG,"Exon (Dlg4-206/Dlg4, exon 1 of 6)",11,70016942,70044954,28013,1,Dlg4-217,7130,Dlg4-217;Dlg4-205;Dlg4-204;Dlg4-209;Dlg4-202;Dlg4-215;Dlg4-203;Dlg4-219;Dlg4-210;Dlg4-214;Dlg4-206;Dlg4-211;Dlg4-222;Dlg4-216,Dlg4;Dlg4;Dlg4;Dlg4;Dlg4;Dlg4;Dlg4;Dlg4;Dlg4;Dlg4;Dlg4;Dlg4;Dlg4;Dlg4,0;0;0;0;0;0;0;0;0;0;0;0;-2878;-3667,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,4,13385,ENSMUSG00000020886,conserved gene but different region,11,70024074,70024158,85,*,85,10,0.647058824,1.142473118,0.117647059,1.22E-08,CpGisland,TRUE,U9,En-Pp
15122,cg02422559,-0.0000102,0.00000551,-1.853273877,0.064793146,loss,ns,0.0000178,0.00000936,1.907422941,0.057389819,pos,ns,0.014083263,0.002740737,5.138494698,0.000000491,pos,ns,6.308978115,-0.000428097,0.0000943,-4.541960082,0.00000799,neg,ns,0.875156558,Wsb1,Wsb1_threeUTR,11,79243528,79243577,79243528,79243529,50,+,CGAGTGGTGCCAGCATAACCTCAATCACACCAATATTGCTGCCACCACCT,3' UTR,11,79239372,79254671,15300,2,Wsb1-201,11094,Wsb1-201;Wsb1-206;Wsb1-202;Wsb1-207;Wsb1-205;Wsb1-203;Wsb1-204,Wsb1;Wsb1;Wsb1;Wsb1;Wsb1;Wsb1;Wsb1,0;-504;0;-579;0;0;7447,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,7,7,78889,ENSMUSG00000017677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
705,cg23014365,0.000000549,0.0000092,0.059629196,0.952489386,gain,ns,0.0000298,0.0000156,1.90726151,0.057410793,pos,ns,0.00050487,0.004580273,0.11022715,0.912300555,pos,ns,0.039862061,0.0000187,0.000157515,0.11851711,0.905734698,pos,ns,0.878096459,Gm49535,Gm49535_Intergenic_upstream,16,8199069,8199118,8199117,8199118,50,+,TTATTCTTGTGTGGCCCTCGTAACATAAATGTAAATCTTTTATGCTAACG,Distal Intergenic,16,8103374,8103788,415,2,Gm49535-201,-95281,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,5,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4147,cg24571227,0.0000276,0.00000624,4.423035746,0.0000135,gain,ns,-0.0000202,0.0000106,-1.907199603,0.057418837,neg,ns,-0.000237268,0.003107507,-0.076353117,0.93918742,neg,ns,0.027247733,0.000129798,0.000106867,1.214577528,0.225451624,pos,ns,0.525476029,Syngap1,Syngap1_threeUTR,17,26970487,26970536,26970535,26970536,50,-,GGTGTCTTGCAGGAGAGGCAGCTTCCCCCCTTGGGTCCAACAAACCCGCG,3' UTR,17,26941253,26972434,31182,1,Syngap1-204,29234,Gm50253-201;Syngap1-204;Syngap1-213;Syngap1-208;Syngap1-202;Syngap1-207;Syngap1-203;Syngap1-201;Syngap1-212;Syngap1-214;Syngap1-206;Syngap1-209;Syngap1-210;Zbtb9-201;Zbtb9-202,Gm50253;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Zbtb9;Zbtb9,-2681;0;0;0;0;0;0;0;0;0;0;0;0;-2631;-2681,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,18,240057,ENSMUSG00000067629,conserved gene and region,17,26970533,26970634,102,*,102,9,0.725490196,0.723404255,0.088235294,0.00000109,CpGisland,TRUE,U11,Tr-P
9423,cg05008505,-0.0000187,0.00000643,-2.905784533,0.003927046,loss,ns,0.0000208,0.0000109,1.907096415,0.057432249,pos,ns,0.003438783,0.003198746,1.075041087,0.283192338,pos,ns,0.547918501,-0.0000213,0.000110005,-0.193850143,0.846420182,neg,ns,0.819500572,Barx1,Barx1_Intergenic_downstream,13,48694635,48694684,48694635,48694636,50,-,CGTATAAACACTAACACCTATGAAGCATGCTCGCCGTGTGATAGCTTGGC,Distal Intergenic,13,48662998,48666507,3510,1,Barx1-201,31686,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,3,12022,ENSMUSG00000021381,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1007,cg20008438,-0.0000126,0.00000497,-2.538648995,0.011617033,loss,ns,-0.0000161,0.00000844,-1.907073107,0.057435278,neg,ns,-0.007078714,0.002473284,-2.862070484,0.004495224,neg,ns,2.347248643,0.0000575,0.0000851,0.676457905,0.499254359,pos,ns,0.873617491,Ddb1,Ddb1_Exon,19,10625256,10625305,10625304,10625305,50,-,GTGGGCACAGCAATGGTGTATCCTGAAGAGGCAGAGCCCAAGCAGGGTCG,"Exon (Ddb1-201/Ddb1, exon 20 of 27)",19,10605327,10629819,24493,1,Ddb1-201,19929,Ddb1-201;Ddb1-210;Ddb1-204;Ddb1-211;Ddb1-207;Ddb1-202,Ddb1;Ddb1;Ddb1;Ddb1;Ddb1;Ddb1,0;0;10391;6262;0;-1298,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,13194,ENSMUSG00000024740,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27660,cg25424394,-0.0000281,0.0000114,-2.470188444,0.014042178,loss,ns,0.0000369,0.0000194,1.906645959,0.057490825,pos,ns,0.013847791,0.005670077,2.442258245,0.015154104,pos,ns,1.819469732,-0.000497399,0.000194993,-2.550849032,0.011226398,neg,ns,0.825037207,Cep170,Cep170_threeUTR,1,176750094,176750143,176750142,176750143,50,-,TTTGATCCAAATTCATCTTCTGAGGTGGAAGCATAATCAGTAGGAAAGCG,3' UTR,1,176733653,176807124,73472,2,Cep170-201,56981,Cep170-201;Cep170-203;Cep170-215;Cep170-212;Cep170-211;Cep170-204;Cep170-214;Cep170-206;Cep170-213,Cep170;Cep170;Cep170;Cep170;Cep170;Cep170;Cep170;Cep170;Cep170,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,4,545389,ENSMUSG00000057335,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25389,cg04678825,-0.00000447,0.00000248,-1.801081022,0.07266183,loss,ns,0.00000803,0.00000421,1.906090787,0.057563087,pos,ns,0.00188406,0.001234553,1.526107084,0.12800278,pos,ns,0.8927806,-0.0000788,0.0000425,-1.856379767,0.064348079,neg,ns,0.946844536,Gm9341,Gm9341_Intergenic_downstream,7,136196656,136196705,136196656,136196657,50,-,CGGGCTTCATTAATCTTTGTTGAATACAATGGCATACATCTTTAATGCGG,Distal Intergenic,7,135952798,135953783,986,1,Gm9341-201,243907,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,27,28,668764,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12194,cg12936702,0.0000179,0.00000629,2.849367204,0.004673838,gain,ns,-0.0000204,0.0000107,-1.905999932,0.057574921,neg,ns,0.00178754,0.003131837,0.570763875,0.568573209,pos,ns,0.245213608,-0.000279264,0.000107704,-2.592894074,0.009968407,neg,ns,0.853022245,Fbxl17,Fbxl17_Intron,17,63306387,63306436,63306435,63306436,50,-,TTTTTACAGCAAGCATAAACAGTTTGACAGTAATTTGTATCATTCTCACG,"Intron (Fbxl17-201/Fbxl17, intron 6 of 8)",17,63057452,63500017,442566,2,Fbxl17-201,193581,Fbxl17-201;Fbxl17-203;Fbxl17-204;Fbxl17-205,Fbxl17;Fbxl17;Fbxl17;Fbxl17,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,8,50758,ENSMUSG00000023965,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2721,cg03176431,-0.000000646,0.00000292,-0.220822568,0.825375958,loss,ns,0.00000946,0.00000497,1.905720049,0.057611386,pos,ns,0.005038088,0.001454934,3.462760905,0.000609831,pos,ns,3.214790408,-0.000135591,0.00005,-2.70991477,0.007104602,neg,ns,0.954185021,Kat6b,Kat6b_Exon,14,21622035,21622084,21622035,21622036,50,-,CGATATGCAAAACCCATTGGACGACCGAAAAATAAATTAAAGCAACGATT,"Exon (Kat6b-206/Kat6b, exon 6 of 17)",14,21499770,21672071,172302,1,Kat6b-206,122265,Kat6b-211;Kat6b-206;Kat6b-204;Kat6b-201;Kat6b-202;Kat6b-208;Kat6b-210;Kat6b-203;Kat6b-214;Kat6b-205;Kat6b-213,Kat6b;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,Exon,11,21,54169,ENSMUSG00000021767,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8052,cg20766695,0.000135556,0.00000724,18.72277707,7.39E-53,gain,yes,-0.0000234,0.0000123,-1.905516325,0.05763794,neg,ns,0.012839078,0.003603506,3.562940702,0.000424413,pos,ns,3.372210991,-0.000102335,0.000123924,-0.82578348,0.40956198,neg,ns,0.137007279,Pax5,Pax5_fiveUTR,4,44703371,44703420,44703419,44703420,50,+,TATGCATGGATGCAAACGGGTCGTGCTTACAGTGTATTTCCATCGGGGCG,Promoter (<=1kb),4,44679454,44703413,23960,2,Pax5-216,0,Pax5-201;Pax5-202;Pax5-203;Pax5-204;Pax5-205;Pax5-207;Pax5-206;Pax5-209;Pax5-210;Pax5-212;Pax5-213;Pax5-214;Pax5-215;Pax5-208;Pax5-216;Pax5-217;Pax5-218;Pax5-219,Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,45,18507,ENSMUSG00000014030,conserved gene but different region,4,44703085,44703505,421,*,421,37,0.617577197,0.926154944,0.087885986,3.03E-26,CpGisland,TRUE,U3,Pr-B
25802,cg21423577,0.000103774,0.00000834,12.44936674,3.98E-29,gain,yes,-0.000027,0.0000142,-1.905456655,0.05764572,neg,ns,0.006034833,0.004148749,1.454615128,0.146787601,pos,ns,0.833310626,0.000279523,0.000142675,1.959156823,0.050990474,pos,ns,0.237900619,Uncx,Uncx_Intergenic_downstream,5,139550084,139550133,139550084,139550085,50,-,CGTAAAATGCCGGTTATTTTATCTAAGGTGAACAATTTGTCTGGCAGCGA,Downstream (1-2kb),5,139543898,139545268,1371,1,Uncx-202,6235,Uncx-201;Uncx-202,Uncx;Uncx,0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,59,88,22255,ENSMUSG00000029546,conserved gene and region,5,139550084,139550187,104,*,104,11,0.509615385,1.62962963,0.105769231,5.75E-09,CpGisland,TRUE,U13,Hc-P
330,cg13233258,0.00000382,0.0000038,1.004523286,0.315909892,gain,ns,-0.0000123,0.00000646,-1.904673516,0.057747906,neg,ns,-0.001555889,0.001893274,-0.821797925,0.411823507,neg,ns,0.385288867,-0.0000579,0.0000651,-0.888677967,0.374865212,neg,ns,0.928555752,Klhl29,Klhl29_Intron,12,5149303,5149352,5149351,5149352,50,-,TTCTAATAATACTAACCAATGATGTGTTAAATTGAGACACTTCTGGCTCG,"Intron (Klhl29-201/Klhl29, intron 3 of 13)",12,5077472,5375682,298211,2,Klhl29-201,226330,Klhl29-201;Klhl29-202,Klhl29;Klhl29,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,23,208439,ENSMUSG00000020627,conserved gene and region,12,5149351,5149390,40,*,40,6,0.65,1.420118343,0.15,0.00000752,CpGisland,TRUE,U15,NS
4597,cg26136675,-0.00000359,0.00000183,-1.962684915,0.050576844,loss,ns,0.00000593,0.00000311,1.904657142,0.057750044,pos,ns,-0.000807907,0.000911376,-0.88646863,0.376052215,neg,ns,0.424751849,0.0000115,0.0000313,0.368411865,0.712817605,pos,ns,0.96093703,Hes1,Hes1_Intergenic_upstream,16,29907446,29907495,29907446,29907447,50,+,CGGATTTCCCTTATGAGTTAGTGTCCCGGAATGTCTCTTTATTAGGTGTC,Distal Intergenic,16,30064384,30065580,1197,1,Hes1-202,-156889,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,20,15205,ENSMUSG00000022528,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8025,cg11712343,-0.0000224,0.0000155,-1.443833593,0.149795622,loss,ns,0.0000503,0.0000264,1.904323767,0.057793591,pos,ns,-0.007186225,0.007731997,-0.929413926,0.353397754,neg,ns,0.451736215,0.000442596,0.000265903,1.664503038,0.097022316,pos,ns,0.399839165,Pax2,Pax2_Intergenic_upstream,19,44695849,44695898,44695849,44695850,50,+,CGGGAGGGGCTGAGAAGGCCCCAGTTTCATTGCAAAACTCACTCAGAAAT,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-60147,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4788,cg16182051,-0.00000179,0.00000465,-0.385140833,0.700397194,loss,ns,-0.000015,0.00000789,-1.904317295,0.057794437,neg,ns,-0.00808314,0.002312364,-3.495617447,0.000541973,neg,ns,3.266022473,0.000233654,0.0000795,2.938226657,0.00354862,pos,ns,0.816168915,Cpa4,Cpa4_Intron,6,30580744,30580793,30580744,30580745,50,-,CGGATAAGCTCGATAAATAGATGGTGCCCTTAGGAACATTTGATCTCTGA,"Intron (Cpa4-201/Cpa4, intron 5 of 10)",6,30568369,30592418,24050,1,Cpa4-201,12375,Cpa4-201,Cpa4,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,71791,ENSMUSG00000039070,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10985,cg13830681,0.000026,0.00000851,3.053422006,0.00245858,gain,ns,0.0000275,0.0000145,1.904209695,0.057808498,pos,ns,0.00539815,0.004237629,1.273860918,0.203666935,pos,ns,0.691079471,-0.000220563,0.000145732,-1.513485816,0.131175131,neg,ns,0.203643012,Nbea,Nbea_Exon,3,56008270,56008319,56008318,56008319,50,+,ACTCTCCAGCCTCCCCATTCATATTTTATTGCATGATACAAAAGAATCCG,"Exon (Nbea-201/Nbea, exon 21 of 58)",3,55625195,56183701,558507,2,Nbea-201,175382,Nbea-201;Nbea-206,Nbea;Nbea,0;-3640,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,14,26422,ENSMUSG00000027799,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16838,cg21087687,-0.0000041,0.00000164,-2.496430759,0.013064011,loss,ns,0.00000531,0.00000279,1.904172361,0.057813378,pos,ns,0.000483068,0.000816707,0.591482945,0.554627941,pos,ns,0.255998255,-0.0000314,0.0000281,-1.117642864,0.264584958,neg,ns,0.949273163,Lrba,Lrba_Intron,3,86745506,86745555,86745506,86745507,50,+,CGCTTTACCACTTAATTTTGTTTTGTTGCAGCATCAGAGGTTGCCAGTCA,"Intron (Lrba-202/Lrba, intron 50 of 50)",3,86224680,86746712,522033,1,Lrba-202,520826,Lrba-202;Lrba-204;Lrba-201;Lrba-206,Lrba;Lrba;Lrba;Lrba,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,45,80877,ENSMUSG00000028080,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7197,cg19247998,-0.0000229,0.00000673,-3.401384728,0.000758347,loss,ns,0.0000218,0.0000114,1.904060583,0.057827989,pos,ns,-0.000620033,0.00335143,-0.185005601,0.85334562,neg,ns,0.068875036,-0.0000492,0.000115255,-0.426772067,0.669841582,neg,ns,0.831555949,Slit1,Slit1_threeUTR,19,41600629,41600678,41600677,41600678,50,+,ATGGCATAGCCCCTCTGGACCTGGTGAAAGTCCCGGACAGGGTCCCCCCG,3' UTR,19,41600257,41743492,143236,2,Slit1-203,142814,Slit1-203;Slit1-201;Slit1-202;Slit1-204,Slit1;Slit1;Slit1;Slit1,0;0;0;7852,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,4,20562,ENSMUSG00000025020,conserved gene but different region,19,41600505,41600685,181,*,181,16,0.701657459,0.728370221,0.08839779,1.18E-11,CpGisland,TRUE,U11,Tr-P
24485,cg04630359,-0.00000796,0.00000231,-3.453050006,0.00063136,loss,ns,0.00000746,0.00000392,1.903959736,0.057841174,pos,ns,0.002057924,0.001147514,1.793376405,0.073887374,pos,ns,1.131429768,-0.0000997,0.0000395,-2.525671067,0.012045835,neg,ns,0.93530174,Ago4,Ago4_Exon,4,126496890,126496939,126496938,126496939,50,-,TCTGCAGTGAAGCAGTTGTCATCCCACAAGACCTGGTAATGTGAGGGACG,"Exon (Ago4-201/Ago4, exon 17 of 18)",4,126489541,126533472,43932,2,Ago4-201,36533,Ago4-201,Ago4,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,76850,ENSMUSG00000042500,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23885,cg03249306,-0.00000653,0.00000145,-4.50395011,0.00000946,loss,ns,0.00000469,0.00000246,1.903857565,0.057854535,pos,ns,0.000998907,0.000721725,1.384054567,0.167337353,pos,ns,0.776407106,-0.0000201,0.0000248,-0.808892518,0.419197337,neg,ns,0.062768026,Ipo5,Ipo5_Exon,14,120911265,120911314,120911265,120911266,50,-,CGCGGCGGAGCAGCAACAGTTCTACCTGCTCCTGGGAAACCTGCTCAGCC,Promoter (<=1kb),14,120911224,120947999,36776,1,Ipo5-201,41,Ipo5-201;Ipo5-202;Ipo5-203,Ipo5;Ipo5;Ipo5,0;0;-4533,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,70572,ENSMUSG00000030662,conserved gene but different region,14,120910705,120911271,567,*,567,85,0.793650794,0.983069862,0.149911817,1.10E-81,CpGisland,TRUE,U1,Pr-A
12983,cg00410898.2,0.00000226,0.00000254,0.890099042,0.374102946,gain,ns,-0.00000821,0.00000431,-1.903657446,0.057880711,neg,ns,-0.003039183,0.001263017,-2.406288116,0.01670048,neg,ns,1.777271034,0.0000928,0.0000434,2.136846654,0.033393004,pos,ns,0.049209525,Stc1,Stc1_Promoter,14,69029089,69029138,69029089,69029090,50,-,CGGCTATAAAATCCCTGGGTGCAGCTCTTGGGCCCCCAGTTTGCAAAAGC,Promoter (<=1kb),14,69029238,69041804,12567,1,Stc1-201,-149,Stc1-201,Stc1,0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,5,9,20855,ENSMUSG00000014813,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
8630,cg26131826,-0.0000276,0.00000489,-5.650017303,3.64E-08,loss,yes,0.0000158,0.00000831,1.903622143,0.05788533,pos,ns,0.001120586,0.002433402,0.460501675,0.645479031,pos,ns,0.190117862,0.00000909,0.0000837,0.108671242,0.913533558,pos,ns,0.894545664,Btrc,Btrc_Intron,19,45474641,45474690,45474689,45474690,50,-,TATGCTGAAGCAAAATGGTCCTGGTATGAGAAGCAACGTGCTGTTTTACG,"Intron (Btrc-204/Btrc, intron 1 of 2)",19,45363734,45507736,144003,1,Btrc-204,110907,Btrc-204;Btrc-201;Btrc-210;Btrc-202;Btrc-203;Btrc-209,Btrc;Btrc;Btrc;Btrc;Btrc;Btrc,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,63,98,12234,ENSMUSG00000025217,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27497,cg12925692,0.0000223,0.0000136,1.643768037,0.101237877,gain,ns,-0.000044,0.0000231,-1.903617359,0.057885956,neg,ns,-0.009952386,0.006765069,-1.471143371,0.142266686,neg,ns,0.846896786,0.000277967,0.00023265,1.194784978,0.233084348,pos,ns,0.563707771,Pbx1,Pbx1_Intergenic_upstream,1,168518630,168518679,168518678,168518679,50,-,TGTCAAAATCTAAAGATGATGCTTCTGCCAAAACATTTTGGTGACAAACG,Distal Intergenic,1,168119364,168432270,312907,2,Pbx1-208,-86409,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,17,84,18514,ENSMUSG00000052534,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27469,cg17572860,0.00000165,0.00000168,0.984703118,0.325537828,gain,ns,-0.00000542,0.00000285,-1.903566147,0.057892657,neg,ns,0.000943155,0.000834593,1.130076868,0.259317445,pos,ns,0.586168266,-0.000029,0.0000287,-1.010279753,0.313149171,neg,ns,0.963383075,Pbx1,Pbx1_Intron,1,168327889,168327938,168327889,168327890,50,-,CGTGTGCTAAAATCTAAACGGATTCTGCCAGGCGAAATGAAATTCCCATT,"Intron (Pbx1-208/Pbx1, intron 2 of 7)",1,168119364,168432270,312907,2,Pbx1-208,104332,Pbx1-208;Pbx1-205;Pbx1-206;Pbx1-201;Pbx1-202;Pbx1-204,Pbx1;Pbx1;Pbx1;Pbx1;Pbx1;Pbx1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,84,18514,ENSMUSG00000052534,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5789,cg18889936,-0.0000479,0.0000101,-4.757647325,0.00000301,loss,ns,0.0000326,0.0000171,1.903407828,0.057913377,pos,ns,-0.004354614,0.005015476,-0.868235511,0.385937057,neg,ns,0.413483519,-0.000301748,0.000172482,-1.749448778,0.08120303,neg,ns,0.525942279,Kirrel3,Kirrel3_Intron,9,34776443,34776492,34776491,34776492,50,-,AACAACCATTTGCAGTGAGCATTTCCAAGGTTTGATGAGCTAGGAGTTCG,"Intron (Kirrel3-202/Kirrel3, intron 2 of 16)",9,34486126,35035280,549155,1,Kirrel3-202,290317,Kirrel3-202;Kirrel3-206;Kirrel3-209;Kirrel3-201;Kirrel3-208;Kirrel3-205,Kirrel3;Kirrel3;Kirrel3;Kirrel3;Kirrel3;Kirrel3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,21,67703,ENSMUSG00000032036,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16370,cg19176697,0.00000219,0.00000153,1.435376471,0.152188029,gain,ns,-0.00000493,0.00000259,-1.902670861,0.058009907,neg,ns,0.000451479,0.000759053,0.594792435,0.552416107,pos,ns,0.257733667,-0.000027,0.0000261,-1.035293082,0.301338984,neg,ns,0.949234517,Trip12,Trip12_Exon,1,84776310,84776359,84776358,84776359,50,+,TACTTACTAGCTCCACTTCCAATTGTTCTATGGAAAAGCTGTGACATCCG,"Exon (Trip12-201/Trip12, exon 7 of 41)",1,84721189,84839304,118116,2,Trip12-201,62945,Trip12-201;Trip12-206;Trip12-207;Trip12-205;Trip12-208;Trip12-216,Trip12;Trip12;Trip12;Trip12;Trip12;Trip12,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,11,14897,ENSMUSG00000026219,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10496,cg19301717,0.000092,0.0000155,5.920563303,8.51E-09,gain,yes,-0.0000502,0.0000264,-1.902621222,0.058016413,neg,ns,0.020385802,0.007732907,2.63624049,0.008805036,pos,ns,2.055268863,-0.001124616,0.000265934,-4.228930301,0.0000309,neg,ns,0.396794235,Tbc1d19,Tbc1d19_threeUTR,5,53901603,53901652,53901603,53901604,50,+,CGAGCAGTGAACCTGATGGAGGTGACATCACTGGCTGCAGCTGAAGTAAG,3' UTR,5,53809627,53903965,94339,1,Tbc1d19-201,91976,Tbc1d19-201;Tbc1d19-205;Tbc1d19-209,Tbc1d19;Tbc1d19;Tbc1d19,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,2,67249,ENSMUSG00000039178,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1623,cg13299972,-0.0000339,0.00000885,-3.832934383,0.000153332,loss,ns,0.0000286,0.000015,1.902504559,0.058031708,pos,ns,-0.00270189,0.004403993,-0.613509062,0.539989683,neg,ns,0.267614538,-0.0000464,0.000151453,-0.306470748,0.759451985,neg,ns,0.637383088,Zfp521,Zfp521_Intron,18,13896625,13896674,13896673,13896674,50,-,GGGTCCCAAGTTCAAATTTCTGAAATGTAGGCATTGTAAAAGGAACCTCG,"Intron (Zfp521-201/Zfp521, intron 3 of 7)",18,13687013,13972787,285775,2,Zfp521-201,76113,Zfp521-201;Zfp521-204;Zfp521-203;Zfp521-202,Zfp521;Zfp521;Zfp521;Zfp521,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,81,225207,ENSMUSG00000024420,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7407,cg09116982,0.00000521,0.00000218,2.390568842,0.017418883,gain,ns,-0.00000705,0.0000037,-1.902312893,0.058056843,neg,ns,0.003178393,0.001085321,2.928527377,0.003658109,pos,ns,2.436743342,-0.000074,0.0000373,-1.981363175,0.048433801,neg,ns,0.947942249,Tcerg1,Tcerg1_threeUTR,18,42560973,42561022,42560973,42560974,50,+,CGCAGGGAAAAGAAAAATAAAATAATGCAAGCCAAGGAAGATTTCAAAAA,3' UTR,18,42511487,42575793,64307,1,Tcerg1-209,49486,Tcerg1-209;Tcerg1-203;Tcerg1-201;Tcerg1-202;Tcerg1-210;Tcerg1-206;Tcerg1-211,Tcerg1;Tcerg1;Tcerg1;Tcerg1;Tcerg1;Tcerg1;Tcerg1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,12,56070,ENSMUSG00000024498,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3242,cg18826401,0.00000208,0.00000329,0.631224731,0.528358729,gain,ns,0.0000106,0.00000559,1.902262638,0.058063435,pos,ns,0.001308288,0.0016391,0.79817484,0.42538005,pos,ns,0.371222882,0.0000555,0.0000564,0.984451302,0.325661373,pos,ns,0.923063161,Gm11888,Gm11888_Intron,4,23338575,23338624,23338575,23338576,50,-,CGATTTACAGTCAGGCAAATTGTGTAAAAAGGCTGATAATACAGTGACGC,"Intron (Gm11884-201/Gm11884-201, intron 1 of 4)",4,23484820,23486020,1201,1,Gm11888-201,-146245,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,14,625462,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13859,cg24905735,-0.00000956,0.00000356,-2.683379881,0.007679526,loss,ns,0.0000115,0.00000605,1.902193103,0.058072556,pos,ns,0.002058079,0.001772524,1.16110076,0.246494213,pos,ns,0.608193273,-0.0000735,0.000061,-1.205343518,0.228989981,neg,ns,0.938236758,Rpl31-ps2,Rpl31-ps2_Intergenic_upstream,13,73116929,73116978,73116929,73116930,50,+,CGTGGGTCAATTGCAAAAGGGATAACCATAATGATTAAATCATTAAAATT,Distal Intergenic,13,73233395,73233737,343,1,Rpl31-ps2-201,-116417,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,8,621486,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13761,cg10766546,0.0000635,0.00000551,11.52173024,8.33E-26,gain,yes,-0.0000178,0.00000936,-1.901511015,0.058162099,neg,ns,0.008921144,0.002741892,3.253644907,0.001265121,pos,ns,2.8978678,-0.0000453,0.0000943,-0.480632547,0.631116692,neg,ns,0.159706099,Rtn1,Rtn1_fiveUTR,12,72408843,72408892,72408891,72408892,50,+,GCTATTCCCAATCCTGTTATTACGCAGGTGAAAATGGCCTGCTTGGTCCG,Promoter (<=1kb),12,72211752,72409054,197303,2,Rtn1-202,162,Rtn1-202,Rtn1,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,1,104001,ENSMUSG00000021087,conserved gene but different region,12,72408595,72408919,325,*,325,29,0.683076923,0.781185247,0.089230769,6.96E-21,CpGisland,TRUE,U3,Pr-B
7677,cg18548847,0.0000247,0.0000115,2.143944319,0.032814925,gain,ns,0.0000373,0.0000196,1.901290738,0.05819104,pos,ns,0.02731135,0.005739977,4.758093826,0.000003,pos,ns,5.522736443,-0.000610558,0.000197397,-3.093040416,0.002161469,neg,ns,0.420057037,Npr2,Npr2_Exon,4,43632266,43632315,43632314,43632315,50,+,GCGGTGGTGCTGCCAGAACACAACCTGAGCTATGCCTGGGCCTGGCCACG,Promoter (<=1kb),4,43631935,43651244,19310,1,Npr2-201,331,Npr2-201;Npr2-202,Npr2;Npr2,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,10,230103,ENSMUSG00000028469,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
18983,cg09422126,-0.0000142,0.0000101,-1.411273972,0.159166667,loss,ns,0.0000326,0.0000171,1.901265544,0.058194351,pos,ns,0.012389208,0.005018974,2.468474176,0.014108281,pos,ns,1.850525911,-0.000404508,0.000172602,-2.343584522,0.019731,neg,ns,0.746862955,Dach1,Dach1_Intron,14,98108932,98108981,98108932,98108933,50,+,CGAGGAGCTCCATTATTGCTGAATCCCTGCTCTTGTTAATTTGCTTGCTG,"Intron (Dach1-201/Dach1, intron 1 of 10)",14,97786853,98169543,382691,2,Dach1-201,60562,Dach1-201;Dach1-202;Dach1-203,Dach1;Dach1;Dach1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,76,13134,ENSMUSG00000055639,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27222,cg01717800,0.0000015,0.00000722,0.207680362,0.835614918,gain,ns,0.0000233,0.0000123,1.901229318,0.058199112,pos,ns,0.005332934,0.00359398,1.483851657,0.138864284,pos,ns,0.857409439,-0.0000515,0.000123597,-0.416515588,0.677321002,neg,ns,0.948890474,Rc3h1,Rc3h1_threeUTR,1,160971648,160971697,160971648,160971649,50,+,CGCTTAGCCAATAACTTCTGTGAAGTTGCCTTTTCTAATGGTGTTATTAC,3' UTR,1,160906418,160974978,68561,1,Rc3h1-202,65230,Rc3h1-202;Rc3h1-204;Rc3h1-201,Rc3h1;Rc3h1;Rc3h1,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,8,381305,ENSMUSG00000040423,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7781,cg09658710,-0.00000144,0.00000414,-0.347092333,0.728757464,loss,ns,0.0000134,0.00000703,1.90122439,0.05819976,pos,ns,0.004962728,0.002058438,2.410919485,0.016493864,pos,ns,1.782677597,-0.000127663,0.0000708,-1.803413599,0.07229411,neg,ns,0.925145592,Arhgap15,Arhgap15_Intron,2,44304714,44304763,44304762,44304763,50,+,TAATCCTTGTTGAGGATTTTGGCTGATTGATATAAATAACATCGTCCCCG,"Intron (Arhgap15-203/Arhgap15, intron 12 of 14)",2,43748824,44395953,647130,1,Arhgap15-203,555890,Arhgap15-203;Arhgap15-202;Arhgap15-201,Arhgap15;Arhgap15;Arhgap15,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,72,78,76117,ENSMUSG00000049744,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7990,cg13845517,0.0000723,0.00000992,7.286331593,2.66E-12,gain,yes,0.0000321,0.0000169,1.901177739,0.058205892,pos,ns,0.012807489,0.004939095,2.593084316,0.009963014,pos,ns,2.001609249,-0.000225828,0.000169855,-1.329530828,0.184650422,neg,ns,0.209176061,Pax2,Pax2_Intergenic_upstream,19,44674851,44674900,44674851,44674852,50,+,CGGTAACCTTTGCAGATGGCGCCGCTATTGCTGAGAAATGGATTGCTTAA,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-81145,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,19,44674652,44674916,265,*,265,31,0.59245283,1.339693412,0.116981132,3.55E-26,CpGisland,TRUE,U13,Hc-P
13376,cg15456301,0.0000424,0.0000365,1.160686914,0.246662278,gain,ns,-0.000117975,0.0000621,-1.901014766,0.058227317,neg,ns,0.010504571,0.018181136,0.577773095,0.563836744,pos,ns,0.248846626,0.00296575,0.000625248,4.743319604,0.00000321,pos,ns,0.300003493,Nr2f2,Nr2f2_Intergenic_downstream,7,70350877,70350926,70350925,70350926,50,-,GCAGTGGGAGACGCCATGTTGGCTCAGCTCATAGGACCAAGTCAAAAGCG,Distal Intergenic,7,70353074,70355237,2164,2,Nr2f2-203,4360,Nr2f2-201;Nr2f2-203;Nr2f2-202;Nr2f2-205,Nr2f2;Nr2f2;Nr2f2;Nr2f2,0;0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,19,69,11819,ENSMUSG00000030551,mapped to different genes,7,70350842,70351320,479,*,479,48,0.724425887,0.780660057,0.100208768,9.37E-37,CpGisland,TRUE,U1,Pr-A
21331,cg06643161,-0.0000251,0.00000514,-4.875666964,0.00000174,loss,yes,-0.0000166,0.00000873,-1.900824339,0.05825236,neg,ns,-0.003097531,0.002558986,-1.21045229,0.227027486,neg,ns,0.643921561,-0.0000241,0.000088,-0.273657612,0.784529995,neg,ns,0.888129665,Pitpnc1,Pitpnc1_Intron,11,107356438,107356487,107356486,107356487,50,-,ATATTGTAAATCTAGTCACCCAGGTAACAGGGCTCCAGTTAGCAACAGCG,"Intron (Pitpnc1-202/Pitpnc1, intron 1 of 9)",11,107207892,107470699,262808,2,Pitpnc1-202,114212,Pitpnc1-202,Pitpnc1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,3,71795,ENSMUSG00000040430,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2447,cg06787902,-0.0000194,0.00000675,-2.86858973,0.004405994,loss,ns,0.0000218,0.0000115,1.900626717,0.058278358,pos,ns,0.002221857,0.003357694,0.661721081,0.50864155,pos,ns,0.293588166,-0.000000979,0.000115471,-0.008477396,0.99324155,neg,ns,0.883509212,Olig3,Olig3_Intergenic_downstream,10,19471484,19471533,19471532,19471533,50,+,AAGTGTTTAGAGCAGTTTTAGCTGAGCCAGAACATGAACAACAAAACCCG,Distal Intergenic,10,19356533,19358604,2072,1,Olig3-201,114951,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,9,94222,ENSMUSG00000045591,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17087,cg03267466,0.00000171,0.00000266,0.640478052,0.522334984,gain,ns,-0.0000086,0.00000453,-1.900599534,0.058281935,neg,ns,-0.003018274,0.001325834,-2.276509283,0.023497039,neg,ns,1.628986863,0.000116912,0.0000456,2.564125126,0.010814665,pos,ns,0.912538174,Msi2,Msi2_Exon,11,88348951,88349000,88348951,88348952,50,-,CGGGCGCGCCAAAATTCGGTTGAGCACTGTAGCTATTCAGGACTGGTGTG,"Exon (Msi2-201/Msi2, exon 12 of 14)",11,88339382,88718229,378848,2,Msi2-203,369229,Msi2-203;Msi2-201,Msi2;Msi2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,36,76626,ENSMUSG00000069769,conserved gene and region,11,88348768,88348968,201,*,201,21,0.696517413,0.87012987,0.104477612,9.68E-17,CpGisland,TRUE,U11,Tr-P
16582,cg23716529,-0.00000244,0.00000139,-1.752393773,0.08069476,loss,ns,0.00000449,0.00000236,1.900318996,0.05831886,pos,ns,0.001148725,0.000691683,1.660768268,0.097771028,pos,ns,1.00978982,-0.0000443,0.0000238,-1.86080266,0.063718668,neg,ns,0.964458258,Gm5231,Gm5231_Intergenic_upstream,17,85553529,85553578,85553529,85553530,50,+,CGGTACTTAGAAAAATTGTAAATACTAAAGAATCAAGGGAATAGGATTAT,Distal Intergenic,17,85541625,85542703,1079,2,Gm5231-201,-10826,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,11,383282,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20522,cg05219417,-0.000000444,0.00000537,-0.082688415,0.934152663,loss,ns,-0.0000173,0.00000913,-1.90031373,0.058319553,neg,ns,-0.002601047,0.002673654,-0.972843794,0.331389419,neg,ns,0.479661363,-0.0000164,0.0000919,-0.17889327,0.858138367,neg,ns,0.837879409,Copz1,Copz1_Intron,15,103277977,103278026,103278025,103278026,50,+,TCTGGGCAAAGGTATCAATTACATTAAGCCCCTAAAGCACTCCCATCTCG,"Intron (Copz1-202/Copz1, intron 1 of 6)",15,103272714,103296850,24137,1,Copz1-202,5263,Copz1-202;Copz1-203;Copz1-201;Copz1-204,Copz1;Copz1;Copz1;Copz1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,6,56447,ENSMUSG00000060992,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14309,cg22945864,0.0000504,0.0000159,3.167470526,0.001690887,gain,ns,-0.0000514,0.000027,-1.900292763,0.058322313,neg,ns,0.030260052,0.007918535,3.821420247,0.000160332,pos,ns,3.794980822,-0.000878569,0.000272318,-3.226263367,0.001388211,neg,ns,0.473455378,Retreg2,Retreg2_Exon,1,75144349,75144398,75144349,75144350,50,+,CGAGTTGTGCAGATACCTGGCTGAGAGCTGGCTCACCTTCCAGATTCACC,"Exon (Retreg2-204/Retreg2, exon 4 of 9)",1,75142778,75147909,5132,1,Retreg2-204,1571,Cnppd1-202;Cnppd1-208;Cnppd1-201;Cnppd1-206;Cnppd1-207;Retreg2-204;Retreg2-201;Retreg2-208;Retreg2-207;Retreg2-202;Retreg2-203;Retreg2-205;Retreg2-206,Cnppd1;Cnppd1;Cnppd1;Cnppd1;Cnppd1;Retreg2;Retreg2;Retreg2;Retreg2;Retreg2;Retreg2;Retreg2;Retreg2,0;0;0;-2546;-1638;0;0;0;0;0;0;971;-906,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,227298,ENSMUSG00000049339,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U4,Pr-F
7580,cg02884637,-0.000000102,0.00000307,-0.033214517,0.973524897,loss,ns,-0.00000992,0.00000522,-1.900290187,0.058322653,neg,ns,0.002800202,0.001529859,1.830366736,0.068155103,pos,ns,1.166501623,-0.00000189,0.0000526,-0.036001203,0.971304571,neg,ns,0.931036095,Pdss2,Pdss2_Intron,10,43317848,43317897,43317848,43317849,50,-,CGTCTGGCATAATATGTATTGATAGAGACTGTAATTGTCAACTCCTATTT,"Intron (Pdss2-204/Pdss2, intron 2 of 7)",10,43221486,43405395,183910,1,Pdss2-204,96362,Gm16546-201;Pdss2-204;Pdss2-201;Pdss2-203;Pdss2-202;Pdss2-206,Gm16546;Pdss2;Pdss2;Pdss2;Pdss2;Pdss2,-1463;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,6,71365,ENSMUSG00000038240,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15834,cg16612602,0.0000331,0.0000241,1.37355473,0.170572456,gain,ns,0.0000779,0.000041,1.900022368,0.058357923,pos,ns,0.031118472,0.012010796,2.590875025,0.010025805,pos,ns,1.998880733,-0.00022628,0.00041305,-0.547827219,0.584204775,neg,ns,0.692498604,Gm7569,Gm7569_Exon,18,83637733,83637782,83637781,83637782,50,-,TCTCCTGACGGCTGATGAGCAGCTTCATGAATATACAAAATAATCCGGCG,"Exon (Gm31621-204/Gm31621-204, exon 1 of 4)",18,83488012,83488522,511,2,Gm7569-201,-149260,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,4,665284,NA,mapped to different genes,18,83637741,83637891,151,*,151,12,0.543046358,1.080500895,0.079470199,2.68E-08,CpGisland,TRUE,U15,NS
24583,cg08628938,0.0000175,0.00000206,8.51198336,7.46E-16,gain,yes,-0.00000665,0.0000035,-1.899974488,0.058364231,neg,ns,0.00161594,0.001025137,1.57631636,0.115972823,pos,ns,0.93564377,-0.0000565,0.0000353,-1.602075225,0.110157417,neg,ns,0.950814583,Sfpq,Sfpq_Intron,4,127029665,127029714,127029713,127029714,50,+,TTTTCAAATTACCCTTTTTTCCTTTCTATGTTCCCGGTACCTGTGGATCG,"Intron (Sfpq-201/Sfpq, intron 9 of 9)",4,127021324,127031236,9913,1,Sfpq-201,8341,Sfpq-201;Sfpq-203;Sfpq-206;Sfpq-205;Sfpq-204;Sfpq-202,Sfpq;Sfpq;Sfpq;Sfpq;Sfpq;Sfpq,0;6282;0;3741;3709;3220,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,12,71514,ENSMUSG00000028820,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2399,cg13296083,-0.00000169,0.00000162,-1.041960715,0.298241798,loss,ns,0.00000523,0.00000275,1.899912739,0.058372366,pos,ns,0.002057656,0.000806014,2.552877868,0.011162586,pos,ns,1.952235185,-0.0000663,0.0000277,-2.390965323,0.017400434,neg,ns,0.960111325,Gm7213,Gm7213_Intergenic_downstream,10,19265435,19265484,19265483,19265484,50,-,AAAGGGCAAATCAACCATAATTCAGTTTATAAACTGTGAAGCTGGTTGCG,Downstream (2-3kb),10,19262034,19262983,950,1,Gm7213-201,3450,Gm7213-201,Gm7213,3401,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,2,2,637620,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20640,cg14428370,0.000000836,0.0000034,0.246129233,0.805745081,gain,ns,0.000011,0.00000577,1.899782162,0.058389573,pos,ns,0.005136468,0.001690005,3.03932063,0.002573089,pos,ns,2.589545134,-0.000166725,0.0000581,-2.868678382,0.004404792,neg,ns,0.921564554,Pou4f1,Pou4f1_Intergenic_downstream,14,104280663,104280712,104280663,104280664,50,-,CGAAGGCCTCGATGATAACAGCATTGATTCCAATGTACATCTAATTACTT,Distal Intergenic,14,104463973,104465365,1393,2,Pou4f1-202,184702,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,31,18996,ENSMUSG00000048349,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17365,cg18118286,0.0000178,0.00000586,3.036113877,0.002599804,gain,ns,-0.0000189,0.00000996,-1.8996329,0.058409247,neg,ns,-0.012133466,0.002918833,-4.156957458,0.0000418,neg,ns,4.37905685,0.000319812,0.000100378,3.186062991,0.00158914,pos,ns,0.662158843,Agap1,Agap1_Intron,1,89865897,89865946,89865945,89865946,50,+,TCTGCCAGCTAATTTAATTAATCACCCCCAGCTCAGCTCTTCCAGCTGCG,"Intron (Agap1-201/Agap1, intron 16 of 17)",1,89454806,89897617,442812,1,Agap1-201,411091,Agap1-201;Agap1-204;Agap1-202,Agap1;Agap1;Agap1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,29,347722,ENSMUSG00000055013,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1886,cg19323059,0.0000119,0.0000124,0.961188175,0.337206671,gain,ns,-0.00004,0.0000211,-1.89956998,0.058417542,neg,ns,-0.00275988,0.006176455,-0.446838849,0.655303427,neg,ns,0.183557561,0.000319159,0.000212408,1.502578594,0.13396571,pos,ns,0.870266111,B230303A05Rik,B230303A05Rik_Intron,13,16007922,16007971,16007970,16007971,50,-,AGCAGTGACGTCAGCAGCAGCTGAGCAAACTGACTACATTTAGTTGTGCG,"Intron (B230303A05Rik-201/B230303A05Rik, intron 1 of 3)",13,15813548,16023360,209813,2,B230303A05Rik-201,15389,B230303A05Rik-201;B230303A05Rik-204;Inhba-201,B230303A05Rik;B230303A05Rik;Inhba,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,6,100503142,ENSMUSG00000113701,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11769,cg13702222,-0.0000212,0.0000144,-1.467583602,0.143231187,loss,ns,-0.0000466,0.0000245,-1.899393308,0.058440839,neg,ns,0.012734045,0.007183295,1.772730337,0.077255378,pos,ns,1.112071279,-0.00096489,0.000247033,-3.905917031,0.000115256,neg,ns,0.154486482,Mbnl1,Mbnl1_fiveUTR,3,60528754,60528803,60528802,60528803,50,-,AGGTTGGTACTAAGAAGTGCCTTTCCTGACGTCTCTGCTGCTTGGAACCG,5' UTR,3,60472830,60595764,122935,1,Mbnl1-222,55924,Mbnl1-222;Mbnl1-221;Mbnl1-216;Mbnl1-220;Mbnl1-211;Mbnl1-204;Mbnl1-201;Mbnl1-209;Mbnl1-202;Mbnl1-225;Mbnl1-217;Mbnl1-203;Mbnl1-218;Mbnl1-208;Mbnl1-219;Mbnl1-214;Mbnl1-207;Mbnl1-205;Mbnl1-212,Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,36,56758,ENSMUSG00000027763,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
26549,cg09170211,0.00000791,0.00000732,1.079874033,0.281037714,gain,ns,-0.0000236,0.0000124,-1.899208323,0.05846524,neg,ns,0.01700885,0.003643603,4.668140551,0.00000453,pos,ns,5.343805888,-0.000432118,0.000125303,-3.448581748,0.000641503,neg,ns,0.881136471,Casz1,Casz1_Intron,4,148908943,148908992,148908991,148908992,50,+,AGTGCTGCTAACAGGGCCAGTCCAGTGAGTAAATATTCCTGGTGTGGACG,"Intron (Casz1-201/Casz1, intron 4 of 15)",4,148804429,148945129,140701,1,Casz1-201,104514,Casz1-201;Casz1-202;Casz1-206,Casz1;Casz1;Casz1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,94,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14274,cg04640560,-0.0000985,0.0000135,-7.270768579,2.93E-12,loss,yes,0.0000437,0.000023,1.899177494,0.058469307,pos,ns,-0.006664846,0.006739564,-0.988913548,0.323476673,neg,ns,0.490157032,-0.00011549,0.000231773,-0.498287523,0.618634732,neg,ns,0.552169381,Smg6,Smg6_Intron,11,75031271,75031320,75031271,75031272,50,-,CGACCCTTTTTATGATGTCATGAGGGATTCCTTAATTTTGCAGCTGCTTC,"Intron (Smg6-201/Smg6, intron 10 of 18)",11,74925823,75164448,238626,1,Smg6-201,105448,Smg6-201;Smg6-202;Smg6-204,Smg6;Smg6;Smg6,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,34,103677,ENSMUSG00000038290,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
887,cg06836529,-0.00000448,0.0000189,-0.237334618,0.812553978,loss,ns,0.0000609,0.0000321,1.899126745,0.058476004,pos,ns,0.0000908,0.009396308,0.00966794,0.992292438,pos,ns,0.003360318,0.000288271,0.000323138,0.892096985,0.373032879,pos,ns,0.542414918,Gm13220,Gm13220_Intron,2,9433374,9433423,9433374,9433375,50,-,CGATTGGCTGATAAGCTTGAAGCCAAAGACTGATTTACACGTAGATGAAT,"Intron (Gm13219-201/Gm13219-201, intron 2 of 3)",2,9575836,9576343,508,1,Gm13220-201,-142462,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,8,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5942,cg17573454,-0.00000682,0.00000619,-1.101239787,0.271646624,loss,ns,-0.00002,0.0000105,-1.898766222,0.058523592,neg,ns,-0.007919605,0.003081084,-2.57039519,0.010624943,neg,ns,1.97367341,-0.000158223,0.000105958,-1.493254847,0.136387553,neg,ns,0.875034054,Ahr,Ahr_Intron,12,35522828,35522877,35522876,35522877,50,+,TTTACACACCCCCTGTTTGCATCCTGTTATTCACTTTGAGCTTCCCTTCG,"Intron (Ahr-202/Ahr, intron 2 of 10)",12,35497974,35535038,37065,2,Ahr-202,12161,Ahr-202;Ahr-201;Ahr-203,Ahr;Ahr;Ahr,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,11622,ENSMUSG00000019256,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3249,cg10534703,0.0000171,0.00000858,1.994423411,0.046981297,gain,ns,0.0000277,0.0000146,1.897941023,0.058632637,pos,ns,0.009093193,0.004270233,2.129437266,0.03400579,pos,ns,1.468447126,-0.00013338,0.000146853,-0.908254678,0.36444921,neg,ns,0.679536898,Gm11888,Gm11888_Intron,4,23341460,23341509,23341460,23341461,50,-,CGACTGGCTGCACAGCTTGATGCATAAATTCATGAGGCTGTTGCATATGA,"Intron (Gm11884-201/Gm11884-201, intron 1 of 4)",4,23484820,23486020,1201,1,Gm11888-201,-143360,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,14,625462,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12076,cg02828846,-0.0000157,0.000015,-1.049609143,0.294715421,loss,ns,-0.0000483,0.0000254,-1.897773315,0.05865482,neg,ns,-0.024895286,0.007451096,-3.341157558,0.000936334,neg,ns,3.028569144,0.000538742,0.000256243,2.102468856,0.036318421,pos,ns,0.668658664,Kcnh7,Kcnh7_Intron,2,62762849,62762898,62762849,62762850,50,-,CGATAATTAAATTGGATATAAATACCTCCTGTTCTTACCGGTGGGTGTTG,"Intron (Kcnh7-201/Kcnh7, intron 9 of 15)",2,62693414,63184278,490865,2,Kcnh7-201,421380,Kcnh7-201,Kcnh7,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,3,170738,ENSMUSG00000059742,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22236,cg25127912,0.0000256,0.00000453,5.64636894,3.71E-08,gain,yes,0.0000146,0.0000077,1.897609266,0.058676525,pos,ns,0.007229631,0.00225578,3.204936353,0.001491673,pos,ns,2.826326282,-0.000166811,0.0000776,-2.150290615,0.032305355,neg,ns,0.071928288,Aspg,Aspg_Exon,12,112130904,112130953,112130952,112130953,50,-,TTCAACAGTTCTGTAGCGCAATTGTGAAATGTTTAGGACCACTAGACCCG,"Exon (Mir203-201/Mir203-201, exon 1 of 1)",12,112121152,112127559,6408,1,Aspg-205,9801,Aspg-201;Aspg-205,Aspg;Aspg,24225;9752,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,104816,ENSMUSG00000037686,mapped to different genes,12,112130952,112131165,214,*,214,28,0.742990654,0.954444091,0.130841122,3.30E-25,CpGisland,TRUE,NA,NRS
7520,cg03816209,-0.00000479,0.000000839,-5.702940298,2.75E-08,loss,yes,0.00000271,0.00000143,1.897530194,0.058686989,pos,ns,-0.000597072,0.000417765,-1.429205858,0.153951976,neg,ns,0.812614733,0.0000366,0.0000144,2.547082619,0.011345726,pos,ns,0.987467512,Dnajb5,Dnajb5_Exon,4,42950894,42950943,42950942,42950943,50,+,GAGCCCTTAAAACTTCGAGCGTGGACGCTGAATGGGTTTGTAAAGTTTCG,"Exon (Dnajb5-201/Dnajb5, exon 2 of 5)",4,42949814,42959425,9612,1,Dnajb5-201,1080,Dnajb5-201;Dnajb5-203;Dnajb5-205;Dnajb5-206;Dnajb5-202;Dnajb5-207;Dnajb5-204,Dnajb5;Dnajb5;Dnajb5;Dnajb5;Dnajb5;Dnajb5;Dnajb5,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,8,56323,ENSMUSG00000036052,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6415,cg10908570,0.00000602,0.00000675,0.891663816,0.373264716,gain,ns,-0.0000218,0.0000115,-1.897449611,0.058697655,neg,ns,-0.009809423,0.00335993,-2.919531915,0.003762403,neg,ns,2.424534661,0.000199782,0.000115548,1.729003272,0.084804071,pos,ns,0.832471804,Zfp536,Zfp536_Intergenic_downstream,7,37149892,37149941,37149940,37149941,50,+,TTCCTTCATGTGTCAGCCCTGAATCTCTTCATATGTTAGGGTGAGCTGCG,Distal Intergenic,7,37472135,37479986,7852,2,Zfp536-204,330045,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,112,243937,ENSMUSG00000043456,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22259,cg02025801,0.00000188,0.00000475,0.395071824,0.693061583,gain,ns,0.0000153,0.00000808,1.897238158,0.058725651,pos,ns,0.005346574,0.00236653,2.259246325,0.024562336,pos,ns,1.609730337,-0.000156322,0.0000814,-1.920782978,0.055676109,neg,ns,0.91456552,Zfp711,Zfp711_Exon,X,112624810,112624859,112624810,112624811,50,-,CGAATGCAGCGGGAGAAGATGGTTTACATGGCAGTTAAAGATTCTTCTCA,"Exon (Zfp711-204/Zfp711, exon 5 of 5)",20,112600526,112626073,25548,1,Zfp711-204,24284,Zfp711-204;Zfp711-202;Zfp711-201;Zfp711-203,Zfp711;Zfp711;Zfp711;Zfp711,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,245595,ENSMUSG00000025529,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15545,cg20557137,-0.000017,0.00000666,-2.549205349,0.011278335,loss,ns,0.0000215,0.0000113,1.897148175,0.058737568,pos,ns,-0.0000462,0.003313378,-0.013929255,0.988895382,neg,ns,0.004849651,-0.00017573,0.000113947,-1.542214027,0.124041742,neg,ns,0.878397224,Gm19311,Gm19311_Exon,14,81685886,81685935,81685934,81685935,50,+,TGGTCATTTCATCAATTCAGTTGAGTACCATTGGGATTTGGATAACACCG,"Exon (Gm41219-201/Gm41219-201, exon 1 of 2)",14,81703206,81703671,466,2,Gm19311-201,17736,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,100502666,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5597,cg16638636,0.00000667,0.00000492,1.355279291,0.176315248,gain,ns,-0.0000159,0.00000836,-1.896881409,0.058772908,neg,ns,-0.00438613,0.002450597,-1.789820923,0.07445863,neg,ns,1.128084958,-0.000106564,0.0000843,-1.264463514,0.207013537,neg,ns,0.808218838,Apc,Apc_Exon,18,34298654,34298703,34298702,34298703,50,-,AACATCATTCACTCACAGCCTGATGACAAGAGAGGCAGGCGTGAAATCCG,"Exon (Apc-209/Apc, exon 8 of 14)",18,34220924,34313506,92583,1,Apc-209,77730,Apc-209;Apc-203;Apc-202;Apc-207;Apc-205;Apc-206,Apc;Apc;Apc;Apc;Apc;Apc,0;0;0;0;0;-2558,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,7,11789,ENSMUSG00000005871,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25474,cg12784380,-0.00000962,0.00000504,-1.906854553,0.057463694,loss,ns,0.0000162,0.00000857,1.896792965,0.058784629,pos,ns,0.008454048,0.002509759,3.368470346,0.000851276,pos,ns,3.069929788,-0.000124902,0.0000863,-1.447123903,0.148872666,neg,ns,0.94425985,Gm8762,Gm8762_Intergenic_downstream,1,136777818,136777867,136777818,136777819,50,-,CGACAATGTTTTTGATTACTCTTGACAAACCTCCTTGGAGTGTTAATTAA,Distal Intergenic,1,136789182,136789520,339,2,Gm8762-201,11702,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,4,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9556,cg15008665,-0.000115986,0.000014,-8.260677203,4.26E-15,loss,yes,0.0000452,0.0000239,1.896259736,0.058855335,pos,ns,-0.000883297,0.006988222,-0.126397951,0.899498864,neg,ns,0.045999381,0.0000779,0.000240324,0.324209064,0.745998402,pos,ns,0.583151699,Kcnip4,Kcnip4_Exon,5,49285264,49285313,49285312,49285313,50,-,GAACCTGTTAATAGTCTGAGAAGGTACTGGGCAAATTTCAGTATTTCACG,"Exon (Kcnip4-206/Kcnip4, exon 1 of 8)",5,48389502,49524907,1135406,2,Kcnip4-201,239594,Kcnip4-201;Kcnip4-207;Kcnip4-206,Kcnip4;Kcnip4;Kcnip4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,6,80334,ENSMUSG00000029088,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4318,cg21608256,-0.000021,0.00000613,-3.420634721,0.000708477,loss,ns,-0.0000198,0.0000104,-1.89623803,0.058858215,neg,ns,-0.003703156,0.00305288,-1.213004149,0.226051734,neg,ns,0.645792156,0.0000346,0.000104988,0.329215692,0.742214975,pos,ns,0.915143464,Rbm33,Rbm33_Exon,5,28352553,28352602,28352553,28352554,50,+,CGATTACGTTTCAAAACTGAAAGGAAAGAAGGAACAATTATTAGGCTCTC,"Exon (Rbm33-203/Rbm33, exon 6 of 6)",5,28317121,28352695,35575,1,Rbm33-203,35432,Rbm33-203;Rbm33-204;Rbm33-202;Rbm33-201,Rbm33;Rbm33;Rbm33;Rbm33,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,381626,ENSMUSG00000048271,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3189,cg04974157,0.0000176,0.000006,2.926889357,0.003676902,gain,ns,0.0000193,0.0000102,1.896189905,0.0588646,pos,ns,-0.000693145,0.002986248,-0.232112414,0.816603856,neg,ns,0.087988574,0.0000908,0.000102697,0.884509902,0.377106522,pos,ns,0.679583282,Eya4,Eya4_Exon,10,23163383,23163432,23163431,23163432,50,+,AAAGGCTTTACCTGACCCAGTAAAAGTGTCAAGCGCTCCATCTCCAGTCG,"Exon (Eya4-202/Eya4, exon 5 of 19)",10,23102963,23349903,246941,2,Eya4-202,186471,Eya4-202;Eya4-201;Eya4-208;Eya4-206;Eya4-203,Eya4;Eya4;Eya4;Eya4;Eya4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,6,14051,ENSMUSG00000010461,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
239,cg08896202,0.0000195,0.00000411,4.750051418,0.00000311,gain,ns,-0.0000133,0.00000699,-1.896113019,0.058874803,neg,ns,-0.001150788,0.002047393,-0.562074909,0.574471156,neg,ns,0.240731772,0.00000467,0.0000704,0.066276238,0.947200623,pos,ns,0.929629357,Gm21992,Gm21992_Exon,19,4802540,4802589,4802588,4802589,50,+,GCATACAGTACCTTTTCGACATGGCGACAGCCTTTTTGTAGGGATCGTCG,"Exon (Rbm14-201/Rbm14, exon 2 of 3)",19,4742913,4811612,68700,2,Gm21992-203,9023,Gm21992-203;Gm21992-206;Gm21992-204;Gm21992-201;Gm21992-205;Gm21992-202;Rbm14-201;Rbm14-202;Rbm14-203,Gm21992;Gm21992;Gm21992;Gm21992;Gm21992;Gm21992;Rbm14;Rbm14;Rbm14,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,27,48,102902673,ENSMUSG00000096370,mapped to different genes,19,4802532,4802658,127,*,127,11,0.637795276,0.976923077,0.086614173,0.00000005,CpGisland,TRUE,U10,Tr-S
423,cg15380538,-0.00000624,0.00000309,-2.015327463,0.044733134,loss,ns,-0.00000997,0.00000526,-1.895827967,0.05891264,neg,ns,-0.000241301,0.001539998,-0.156689291,0.875591723,neg,ns,0.057698353,-0.0000186,0.000053,-0.351942233,0.725120704,neg,ns,0.913457069,Pcnx3,Pcnx3_Exon,19,5680269,5680318,5680269,5680270,50,-,CGATGACCAGGCAGAACTGGAAGACCCAGATGTCAGTGAAGAAGCCCTTG,"Exon (Pcnx3-202/Pcnx3, exon 12 of 35)",19,5664635,5688908,24274,2,Pcnx3-202,8590,Pcnx3-202;Pcnx3-201;Pcnx3-210;Pcnx3-208;Pcnx3-204;Pcnx3-209;Pcnx3-212;Pcnx3-207,Pcnx3;Pcnx3;Pcnx3;Pcnx3;Pcnx3;Pcnx3;Pcnx3;Pcnx3,0;0;0;-692;0;0;0;8377,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,7,104401,ENSMUSG00000054874,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22138,cg26205938,0.0000471,0.0000151,3.111337452,0.002035742,gain,ns,-0.0000487,0.0000257,-1.89577878,0.058919171,neg,ns,0.010261916,0.007531413,1.362548589,0.174013866,pos,ns,0.759416145,-0.000688944,0.000259005,-2.659965675,0.008221276,neg,ns,0.744524907,Pitpnb,Pitpnb_Intergenic_downstream,5,111394394,111394443,111394442,111394443,50,+,TTGGCCCGCTGAGACTGCATAACCATCTGCCATAAATTGAGACTAGTACG,Distal Intergenic,5,111380169,111383703,3535,1,Pitpnb-203,14225,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,3,56305,ENSMUSG00000050017,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7211,cg15292635,0.00000804,0.00000786,1.022564747,0.30731099,gain,ns,-0.0000253,0.0000134,-1.895699776,0.058929662,neg,ns,-0.00199696,0.003913704,-0.510248153,0.610240731,neg,ns,0.214498809,0.0000376,0.000134592,0.279677149,0.779911725,pos,ns,0.892146956,Gria3,Gria3_Exon,X,41654906,41654955,41654906,41654907,50,-,CGGGGGCGGTGACTCCAAGGTCAGCCTCAATGTCACCACAACCGGGTACC,"Exon (Gria3-202/Gria3, exon 15 of 17)",20,41401128,41676585,275458,1,Gria3-202,253778,Gria3-202;Gria3-201;Gria3-208;Gria3-206;Gria3-209,Gria3;Gria3;Gria3;Gria3;Gria3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,26,53623,ENSMUSG00000001986,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14597,cg21821479,0.00000304,0.00000227,1.342690745,0.180354455,gain,ns,0.0000073,0.00000385,1.895595705,0.058943485,pos,ns,0.002060953,0.001127534,1.827841563,0.068534374,pos,ns,1.164091549,-0.000068,0.0000388,-1.753782652,0.08045596,neg,ns,0.946301726,Pcbp3,Pcbp3_Exon,10,76785135,76785184,76785183,76785184,50,+,CTTACCTGACCACCTGCAAAAATGACAGGGGTGGAGGCGGGCTTTGGGCG,"Exon (Pcbp3-201/Pcbp3, exon 10 of 16)",10,76761857,76961788,199932,2,Pcbp3-201,176604,Pcbp3-201;Pcbp3-207;Pcbp3-206;Pcbp3-203;Pcbp3-205;Pcbp3-209;Pcbp3-202;Pcbp3-208,Pcbp3;Pcbp3;Pcbp3;Pcbp3;Pcbp3;Pcbp3;Pcbp3;Pcbp3,0;0;0;0;0;0;0;120678,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,59093,ENSMUSG00000001120,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18512,cg06173215,0.00000435,0.0000137,0.31842893,0.750374017,gain,ns,0.000044,0.0000232,1.895571068,0.058946758,pos,ns,-0.006151378,0.006804954,-0.903955855,0.366720731,neg,ns,0.435664538,0.000425953,0.000234022,1.820142009,0.069701592,pos,ns,0.698460895,Tfdp2,Tfdp2_fiveUTR,9,96259209,96259258,96259209,96259210,50,-,CGTCTGACACAGTCTCAAGTTTCCACTGAATGGTAACAAAGACTGTAGAA,Promoter (<=1kb),9,96259253,96318981,59729,1,Tfdp2-204,0,Tfdp2-202;Tfdp2-201;Tfdp2-208;Tfdp2-209;Tfdp2-206;Tfdp2-210;Tfdp2-207;Tfdp2-212;Tfdp2-205;Tfdp2-211;Tfdp2-204;Tfdp2-203,Tfdp2;Tfdp2;Tfdp2;Tfdp2;Tfdp2;Tfdp2;Tfdp2;Tfdp2;Tfdp2;Tfdp2;Tfdp2;Tfdp2,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,2,211586,ENSMUSG00000032411,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
2899,cg14823185,0.0000509,0.00000741,6.871838015,3.49E-11,gain,yes,0.0000239,0.0000126,1.895217563,0.058993732,pos,ns,0.010494781,0.003689872,2.844212741,0.004748136,pos,ns,2.323476869,-0.0000753,0.000126894,-0.593692295,0.553150881,neg,ns,0.864576419,Lrmda,Lrmda_Intron,14,22037042,22037091,22037042,22037043,50,+,CGAACAGGCCCTTGATCAATAAATGTAACATGTTAATGCAGAGCAAATAG,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,17330,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206,Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12101,cg18453751,-0.00000647,0.00000244,-2.655762545,0.008322087,loss,ns,-0.00000785,0.00000414,-1.895012401,0.059021009,neg,ns,0.0000224,0.001213404,0.018448674,0.985292791,pos,ns,0.006434695,0.0000202,0.0000417,0.482942379,0.629477528,pos,ns,0.935615659,Pias1,Pias1_Exon,9,62912743,62912792,62912791,62912792,50,+,TACGTACTTAAAGCTCTAGAATGATCCGGATTCCTTATTCCCTTTGCTCG,"Exon (Pias1-201/Pias1, exon 7 of 14)",9,62878368,62980879,102512,2,Pias1-201,68087,Pias1-201;Pias1-202,Pias1;Pias1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,12,56469,ENSMUSG00000032405,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7958,cg04367175,0.0000515,0.00000538,9.581955143,3.23E-19,gain,yes,-0.0000173,0.00000913,-1.894661384,0.059067702,neg,ns,-0.00049491,0.002675814,-0.184956866,0.853383813,neg,ns,0.068855599,0.0000903,0.000092,0.981467089,0.3271278,pos,ns,0.14126698,Pax2,Pax2_Intergenic_upstream,19,44670433,44670482,44670481,44670482,50,+,CTCCCCTCCGGTTCCCATGTTGTCGAGGCATGCTGGGAGTACAAGTTCCG,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-85563,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,19,44670410,44670516,107,*,107,13,0.672897196,1.074131274,0.121495327,2.26E-11,CpGisland,TRUE,U13,Hc-P
22706,cg07576603,-0.00000662,0.0000062,-1.068287565,0.286221987,loss,ns,-0.0000199,0.0000105,-1.894530488,0.059085122,neg,ns,-0.006381026,0.00308357,-2.069363503,0.039340308,neg,ns,1.405162243,-0.0000619,0.000106044,-0.583896008,0.559714892,neg,ns,0.856383066,Sox6,Sox6_Intron,7,115766529,115766578,115766577,115766578,50,-,ACAAACAGACGGTCCTGGATTACAAGCAGCACTTGACCATTTAAATCACG,"Intron (Sox6-210/Sox6, intron 4 of 15)",7,115470872,116031047,560176,2,Sox6-210,264469,Sox6-210;Sox6-201;Sox6-202;Sox6-204;Sox6-205;Sox6-203;Sox6-212;Sox6-206;Sox6-209;Sox6-214,Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,37,57,20679,ENSMUSG00000051910,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15686,cg22684134,-0.0000449,0.0000165,-2.713338641,0.007033318,loss,ns,0.0000533,0.0000281,1.894389622,0.059103873,pos,ns,-0.006417486,0.008235803,-0.779217945,0.436445777,neg,ns,0.360069704,0.000546396,0.000283229,1.929169303,0.054622427,pos,ns,0.369934277,Gm14741,Gm14741_Intergenic_upstream,X,82815146,82815195,82815194,82815195,50,-,CAAACAGTGTTGCTTTTACAGAATGGATTTTAAAATTGCCTTGTGCTGCG,Distal Intergenic,20,82757430,82758438,1009,2,Gm14741-201,-56757,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,11,100415954,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6049,cg07127398,0.0000213,0.0000133,1.602283748,0.110111303,gain,ns,0.0000428,0.0000226,1.894102914,0.059142054,pos,ns,0.007839906,0.006618306,1.184578932,0.237091359,pos,ns,0.625084273,0.000149101,0.000227603,0.655093243,0.512893521,pos,ns,0.739773304,Psd2,Psd2_Exon,18,35913320,35913369,35913368,35913369,50,+,CATCTGCCTCGTGTCTGTCTGCGACTAAAATAATACTGGGGTGAGACTCG,"Exon (C330008A17Rik-201/C330008A17Rik-201, exon 1 of 2)",18,35964830,36014712,49883,1,Psd2-201,-51461,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,29,74002,ENSMUSG00000024347,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16684,cg26188056,-0.00000229,0.00000804,-0.285273776,0.775624904,loss,ns,-0.0000259,0.0000137,-1.894086452,0.059144247,neg,ns,0.000704137,0.004002498,0.175924374,0.860468219,pos,ns,0.065265165,-0.000038,0.000137646,-0.276258908,0.782533299,neg,ns,0.753497241,Tgfb3,Tgfb3_Exon,12,86077788,86077837,86077836,86077837,50,+,TCAAGATCTGTCCCCTAATGGCTTCCACCCTCTTCTTCTTGATGTGGCCG,"Exon (Tgfb3-201/Tgfb3, exon 1 of 7)",12,86056745,86079041,22297,2,Tgfb3-201,1204,Ift43-204;Ift43-201;Ift43-205;Ift43-206;Ift43-207;Tgfb3-201,Ift43;Ift43;Ift43;Ift43;Ift43;Tgfb3,-4704;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,3,21809,ENSMUSG00000021253,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9759,cg15043841,0.000145336,0.0000127,11.46715014,1.30E-25,gain,yes,-0.0000408,0.0000215,-1.89405935,0.059147857,neg,ns,0.019753327,0.006308051,3.131446936,0.001905361,pos,ns,2.720022719,-0.000566766,0.000216933,-2.612626341,0.009422749,neg,ns,0.138118572,Sorcs1,Sorcs1_Exon,19,50677980,50678029,50678028,50678029,50,+,GGTGCTGGTCAGTCTCAGCTCCTCCATCCGGAAGCGGGTGGCTTTGTCCG,Promoter (<=1kb),19,50143299,50678646,535348,2,Sorcs1-205,617,Sorcs1-205;Sorcs1-201;Sorcs1-208;Sorcs1-203;Sorcs1-202;Sorcs1-207;Sorcs1-206,Sorcs1;Sorcs1;Sorcs1;Sorcs1;Sorcs1;Sorcs1;Sorcs1,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,8,58178,ENSMUSG00000043531,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
22982,cg04107706,-0.000065,0.0000147,-4.424879794,0.0000134,loss,ns,0.0000473,0.000025,1.893820505,0.059179683,pos,ns,0.00286971,0.007315742,0.392265044,0.695131941,pos,ns,0.157932755,-0.000334187,0.000251588,-1.328311489,0.185052287,neg,ns,0.43855084,Gm13991,Gm13991_Intergenic_upstream,2,116565655,116565704,116565703,116565704,50,-,TCCCTTTTGTTGCAAATAAGATGTAAAACAGCTATAACTGCTGGAGAACG,Distal Intergenic,2,116527843,116528490,648,2,Gm13991-201,-37214,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,20,433464,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10639,cg23890276,0.0000339,0.00000803,4.22461556,0.0000315,gain,ns,0.0000258,0.0000136,1.893769053,0.05918654,pos,ns,0.001460319,0.003997346,0.365322049,0.715120151,pos,ns,0.145620984,0.000302864,0.000137468,2.203152691,0.028319329,pos,ns,0.381603451,Sncb,Sncb_fiveUTR,13,54765641,54765690,54765641,54765642,50,+,CGCCCTCCTTGGCCATGGACAGGCCCTTCATGAACACGTCCATCCTGGCG,Promoter (<=1kb),13,54758860,54766595,7736,2,Sncb-201,905,Sncb-201;Sncb-202;Sncb-204;Sncb-203,Sncb;Sncb;Sncb;Sncb,0;0;-2574;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,1,104069,ENSMUSG00000034891,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
26276,cg03568747,0.00000619,0.00000897,0.690383638,0.49046952,gain,ns,0.0000288,0.0000152,1.893755797,0.059188307,pos,ns,0.015931206,0.004462794,3.569783357,0.000413909,pos,ns,3.383095048,-0.000315603,0.000153475,-2.056376049,0.040583084,neg,ns,0.642617886,Cfap61,Cfap61_Exon,2,146045469,146045518,146045517,146045518,50,-,GCGACCACGACGACAGATTGTCTATCCTCTGGAAAAGCTTGGCATAAACG,"Exon (Cfap61-206/Cfap61, exon 17 of 27)",2,145934814,146215039,280226,1,Cfap61-206,110655,Cfap61-204;Cfap61-206;Cfap61-213;Cfap61-211;Cfap61-203;Cfap61-209,Cfap61;Cfap61;Cfap61;Cfap61;Cfap61;Cfap61,0;0;0;0;0;-1733,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,13,78774,ENSMUSG00000037143,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19893,cg24335310,-0.0000197,0.0000147,-1.337028239,0.182193709,loss,ns,0.0000474,0.000025,1.893726163,0.059192257,pos,ns,0.023360462,0.007335529,3.184563909,0.001597129,pos,ns,2.796660034,-0.000781199,0.000252268,-3.096701469,0.002135754,neg,ns,0.676700008,Gm43103,Gm43103_Intergenic_upstream,5,101521577,101521626,101521577,101521578,50,+,CGTAGTAAAAGGGGTGGGAATGAAACATCCACCAAAATGTTGAGCAGGCC,Distal Intergenic,5,101505528,101506329,802,2,Gm43103-201,-15248,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,10,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20874,cg18058532,-0.00000965,0.0000111,-0.865810929,0.38726342,loss,ns,0.0000359,0.0000189,1.893683948,0.059197885,pos,ns,0.001651906,0.005546597,0.297823333,0.766037502,pos,ns,0.115749969,0.0000846,0.000190747,0.443286853,0.657867464,pos,ns,0.17979576,Pax6,Pax6_fiveUTR,2,105675601,105675650,105675601,105675602,50,+,CGCCGGCACACACACATTAACACACTTGAGCCATCACCAATCAGCATAGG,5' UTR,2,105668900,105697364,28465,1,Pax6-206,6701,Pax6-206;Pax6-207;Pax6-210;Pax6-214;Pax6-208;Pax6-217;Pax6-226;Pax6-220;Pax6-202;Pax6-205;Pax6-225;Pax6-204;Pax6-201;Pax6-203;Pax6-224;Pax6-219,Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,15,78,18508,ENSMUSG00000027168,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
9678,cg09568551,-0.00000259,0.00000423,-0.61297276,0.540343781,loss,ns,-0.0000136,0.00000719,-1.893659347,0.059201164,neg,ns,-0.002097545,0.002106365,-0.995812572,0.320117871,neg,ns,0.49469008,-0.000097,0.0000724,-1.338618868,0.181675646,neg,ns,0.931555788,Gm7481,Gm7481_Intergenic_upstream,12,49945391,49945440,49945391,49945392,50,-,CGCTTATGCTCCAGGGAGATTTGTATAGAATCTGACGCTTGTATCAGCTC,Distal Intergenic,12,49840757,49841751,995,2,Gm7481-201,-103689,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,27,37,665077,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3366,cg02329252,0.00000135,0.0000015,0.899400318,0.369137561,gain,ns,0.00000483,0.00000255,1.893246078,0.059256281,pos,ns,0.001938877,0.000747644,2.593314658,0.009956488,pos,ns,2.00189383,-0.0000227,0.0000257,-0.882583062,0.37814545,neg,ns,0.959856294,Papolg,Papolg_Exon,11,23873819,23873868,23873819,23873820,50,-,CGAGTTGATGTGGACACATTATACGTAGAATTCTGTTGTGGGTAGGCAGG,"Exon (Papolg-201/Papolg, exon 11 of 22)",11,23862646,23895253,32608,2,Papolg-201,21385,Papolg-201;Papolg-204;Papolg-202,Papolg;Papolg;Papolg,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,9,216578,ENSMUSG00000020273,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18063,cg15116103,-0.00000429,0.00000227,-1.88986234,0.059709175,loss,ns,0.0000073,0.00000386,1.89294767,0.059296106,pos,ns,0.002911025,0.001130574,2.574820617,0.010492832,pos,ns,1.979107286,-0.000128086,0.0000389,-3.294368644,0.001100668,neg,ns,0.937334925,Pola1,Pola1_Intron,X,93442543,93442592,93442543,93442544,50,+,CGTAGATGAATAATCAAGCTACAATTTGTATTTACTGGATTATAGAAAAT,"Intron (Pola1-201/Pola1, intron 34 of 36)",20,93304767,93632155,327389,2,Pola1-201,189563,Pola1-201,Pola1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,59,62,18968,ENSMUSG00000006678,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5288,cg11327514,-0.0000334,0.00000619,-5.389232671,0.00000014,loss,yes,0.0000199,0.0000105,1.892798717,0.059315993,pos,ns,0.000921419,0.003080815,0.299082816,0.765077261,pos,ns,0.116294706,-0.000240561,0.000105949,-2.270534558,0.023861089,neg,ns,0.883077135,Ranbp17,Ranbp17_Intron,11,33327494,33327543,33327542,33327543,50,+,TATACCTACTAACAGAAATATTGCATGGTGGATTTTGCCAGACAAGGACG,"Intron (Ranbp17-202/Ranbp17, intron 16 of 27)",11,33211795,33513746,301952,2,Ranbp17-202,186203,Ranbp17-202;Ranbp17-206;Ranbp17-203;Ranbp17-205,Ranbp17;Ranbp17;Ranbp17;Ranbp17,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,31,66011,ENSMUSG00000040594,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15514,cg08706426,-0.000022,0.00000968,-2.268462783,0.023988469,loss,ns,0.0000311,0.0000164,1.892365179,0.059373908,pos,ns,-0.003104904,0.004817531,-0.644500987,0.519727231,neg,ns,0.284224528,-0.0000213,0.000165674,-0.12845584,0.897871538,neg,ns,0.458180229,Celf5,Celf5_fiveUTR,10,81473053,81473102,81473053,81473054,50,-,CGCTGATTCACCACACGGAAGCTGGCAATTGTTGTTGCCATGGAAACCGC,5' UTR,10,81459227,81482709,23483,2,Celf5-201,9607,Celf5-201;Celf5-202;Celf5-204;Celf5-203;Celf5-209;Celf5-207;Celf5-206;Celf5-205;Celf5-208,Celf5;Celf5;Celf5;Celf5;Celf5;Celf5;Celf5;Celf5;Celf5,0;0;0;0;0;-2246;0;0;-51,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,3,319586,ENSMUSG00000034818,mapped to different genes,10,81473053,81473250,198,*,198,11,0.570707071,0.68490566,0.055555556,0.00000422,CpGisland,TRUE,U13,Hc-P
24162,cg19488207,-0.0000503,0.0000175,-2.866519157,0.004434158,loss,ns,0.0000564,0.0000298,1.892236562,0.059391098,pos,ns,-0.0000794,0.008732268,-0.009093289,0.992750554,neg,ns,0.003159862,0.000116144,0.000300302,0.386758765,0.699200157,pos,ns,0.669174975,Tmtc4,Tmtc4_Intron,14,123065070,123065119,123065118,123065119,50,-,GTAATTCTGCTAATGTACTGATTAATTTATGTTATTCTCTTCCACTCACG,"Intron (AA536875-206/AA536875-206, intron 1 of 3)",14,122978126,122984035,5910,2,Tmtc4-207,-81084,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,70551,ENSMUSG00000041594,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
517,cg24881713,0.0000864,0.0000143,6.056610144,4.02E-09,gain,yes,-0.0000458,0.0000242,-1.892186965,0.059397728,neg,ns,0.010431215,0.007098351,1.469526553,0.142704131,pos,ns,0.845563454,-0.000143323,0.000244112,-0.587122107,0.557549054,neg,ns,0.395790972,St18,St18_Intron,1,6734695,6734744,6734695,6734696,50,-,CGGCAACCTTGAGGGTCACTGTGTGGAGTATGTACATAGAAAATGCATCA,"Intron (St18-208/St18, intron 2 of 23)",1,6487231,6860934,373704,1,St18-208,247464,St18-208;St18-204;St18-201;St18-206;St18-203;St18-210;St18-212;St18-207;St18-213,St18;St18;St18;St18;St18;St18;St18;St18;St18,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,20,240690,ENSMUSG00000033740,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16517,cg04397581,0.000205871,0.0000164,12.584352,1.29E-29,gain,yes,-0.0000526,0.0000278,-1.89213369,0.059404851,neg,ns,-0.003906143,0.008142203,-0.479740261,0.631750389,neg,ns,0.199454482,0.0000827,0.00028001,0.295241466,0.768007068,pos,ns,0.736582591,Tent5a,Tent5a_Exon,9,85325118,85325167,85325118,85325119,50,+,CGGAGGGAATCCACAAATTTCAGTTCCACATTTTTGCCACTGTTGTTTGA,"Exon (Tent5a-201/Tent5a, exon 3 of 3)",9,85320439,85327124,6686,2,Tent5a-201,1957,Tent5a-201;Tent5a-202,Tent5a;Tent5a,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,6,212943,ENSMUSG00000032265,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
21816,cg22423529,0.0000667,0.00000967,6.899274834,2.95E-11,gain,yes,-0.0000311,0.0000164,-1.892121853,0.059406433,neg,ns,0.003913834,0.004812957,0.813187123,0.416734885,pos,ns,0.380140143,-0.000245965,0.000165517,-1.486038801,0.138285123,neg,ns,0.168479252,Lmo1,Lmo1_Intergenic_upstream,7,109191928,109191977,109191928,109191929,50,-,CGTGACAGCTCCCACTTAGCCTGAAGAGACATGAAAGAGGCAACAGATGC,Distal Intergenic,7,109138675,109175207,36533,2,Lmo1-202,-16770,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,34,66,109594,ENSMUSG00000036111,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18665,cg04236764,-0.00000765,0.00000535,-1.429802817,0.153780648,loss,ns,-0.0000172,0.00000909,-1.892084705,0.0594114,neg,ns,-0.004579196,0.002661707,-1.720398605,0.086357915,neg,ns,1.063697852,-0.0000598,0.0000915,-0.652828867,0.514350444,neg,ns,0.900881236,Dscam,Dscam_Exon,16,96640876,96640925,96640876,96640877,50,+,CGTTTTGGACAACTGACTTAATGAGTGGAGGAATTGTACCTGAAAGCAGG,"Exon (Dscam-201/Dscam, exon 27 of 33)",16,96590840,97170752,579913,2,Dscam-201,529827,Dscam-201,Dscam,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,12,13508,ENSMUSG00000050272,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3800,cg02201144,0.0000199,0.00000482,4.122905304,0.0000481,gain,ns,-0.0000155,0.00000819,-1.891837873,0.059444412,neg,ns,-0.006745001,0.002400372,-2.809981123,0.005269431,neg,ns,2.278236298,0.0000953,0.0000825,1.154950782,0.249000061,pos,ns,0.936409657,Celf4,Celf4_Exon,18,25481675,25481724,25481675,25481676,50,+,CGAAACTTGACGGCAATTGTCATGCAACCGATTCTTAGCCTTGTTACATG,"Exon (Celf4-204/Celf4, exon 1 of 1)",18,25477632,25753983,276352,2,Celf4-202,272259,Celf4-202;Celf4-201;Celf4-203;Celf4-207;Celf4-206;Celf4-208;Celf4-204,Celf4;Celf4;Celf4;Celf4;Celf4;Celf4;Celf4,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,31,59,108013,ENSMUSG00000024268,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27225,cg04122115,-0.00000195,0.00000115,-1.696854427,0.09072793,loss,ns,0.00000369,0.00000195,1.891711735,0.059461288,pos,ns,0.001140723,0.000572185,1.993625154,0.047069007,pos,ns,1.327264965,-0.0000106,0.0000197,-0.539055,0.590235817,neg,ns,0.96654093,Chd6,Chd6_Exon,2,161008518,161008567,161008518,161008519,50,-,CGTACTCGCCCATCAATTCGCTCATAGGTGTATCTGAGGGGACCCAAATG,"Exon (Chd6-201/Chd6, exon 17 of 37)",2,160946978,161109022,162045,2,Chd6-201,100455,Chd6-201;Chd6-204;Chd6-209;Chd6-207,Chd6;Chd6;Chd6;Chd6,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,8,71389,ENSMUSG00000057133,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6072,cg27395516,0.00000838,0.00000764,1.096466933,0.273725519,gain,ns,0.0000246,0.000013,1.89154822,0.059483171,pos,ns,0.010679767,0.003802926,2.80830266,0.005296279,pos,ns,2.276029119,-0.000211954,0.000130782,-1.620665104,0.106106182,neg,ns,0.217894239,Psd2,Psd2_Intergenic_upstream,18,35933707,35933756,35933707,35933708,50,+,CGCCGGGCCCTTTGGGGGAATACTAATTCCACTACAAGATAAATCATAAT,Distal Intergenic,18,35964830,36014712,49883,1,Psd2-201,-31074,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,24,29,74002,ENSMUSG00000024347,mapped to different genes,18,35933670,35933711,42,*,42,10,0.761904762,1.647058824,0.238095238,3.06E-12,CpGisland,TRUE,U13,Hc-P
5337,cg22228949,-0.00000104,0.000000722,-1.433065882,0.15284672,loss,ns,0.00000232,0.00000123,1.891419103,0.059500454,pos,ns,-0.00000936,0.000359583,-0.02603335,0.979247488,neg,ns,0.009107534,0.00001,0.0000124,0.80944041,0.418882707,pos,ns,0.98513408,Zbtb43,Zbtb43_Intergenic_upstream,2,33515922,33515971,33515922,33515923,50,+,CGATCGATCTTATATCCGGCACAATCAGATTTATGGCTCCTGCATCTTAT,Distal Intergenic,2,33454888,33468559,13672,2,Zbtb43-204,-47363,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,6,71834,ENSMUSG00000026788,conserved gene and region,2,33515818,33515949,132,*,132,9,0.583333333,0.933962264,0.068181818,0.00000904,CpGisland,TRUE,NA,NRS
15718,cg12791299,0.000011,0.00000462,2.369728887,0.018413218,gain,ns,-0.0000149,0.00000786,-1.891382825,0.059505311,neg,ns,-0.003015212,0.002301529,-1.310090972,0.191134989,neg,ns,0.718659804,0.0000106,0.0000791,0.134426109,0.89315287,pos,ns,0.901831968,Gm48156,Gm48156_Intergenic_downstream,13,82971898,82971947,82971946,82971947,50,+,TGATGGAGTACATCAGTGTCAAACTCCTTGCTGGTTTCCACACGCACACG,Distal Intergenic,13,83189565,83189709,145,2,Gm48156-201,217762,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,16,,NA,mapped to different genes,13,82971940,82971998,59,*,59,7,0.542372881,1.995169082,0.118644068,0.00000415,CpGisland,TRUE,U15,NS
24248,cg11952386,-0.000016,0.00000594,-2.693448365,0.007456616,loss,ns,-0.0000191,0.0000101,-1.891363,0.059507966,neg,ns,0.005653464,0.002956919,1.911944588,0.056804952,pos,ns,1.245613802,-0.000431389,0.000101688,-4.242273664,0.0000293,neg,ns,0.733310936,Pitpnm2,Pitpnm2_Intron,5,124206725,124206774,124206773,124206774,50,+,AAGCCGCTGGGATAATGGCAAGGCCAGAAATAGCCTTGAAGACATTCACG,"Intron (Pitpnm2-201/Pitpnm2, intron 1 of 23)",5,124118690,124216418,97729,2,Pitpnm2-201,9644,Pitpnm2-201;Pitpnm2-210;Pitpnm2-205,Pitpnm2;Pitpnm2;Pitpnm2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,4,19679,ENSMUSG00000029406,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20758,cg25828564,-0.00000251,0.00000307,-0.815949819,0.415155346,loss,ns,-0.00000987,0.00000522,-1.891159694,0.059535192,neg,ns,-0.000551031,0.001529437,-0.360283797,0.718880264,neg,ns,0.143343439,-0.0000242,0.0000526,-0.460572414,0.645428325,neg,ns,0.939063513,Prkaa2,Prkaa2_Exon,4,105040023,105040072,105040023,105040024,50,-,CGATTGTCAATGATAAGATGATAAGCCACTGCAAGCTGGTCTTGAGGGTC,"Exon (Prkaa2-201/Prkaa2, exon 7 of 9)",4,105029874,105109890,80017,2,Prkaa2-201,69818,Prkaa2-201,Prkaa2,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,108079,ENSMUSG00000028518,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7870,cg20217707,-0.00000299,0.00000285,-1.046641475,0.296080344,loss,ns,0.00000916,0.00000485,1.891038593,0.059551414,pos,ns,0.002320151,0.001419588,1.634383196,0.103193468,pos,ns,0.986347792,-0.0000887,0.0000488,-1.816752727,0.070220565,neg,ns,0.932218816,Gtdc1,Gtdc1_Intron,2,44575843,44575892,44575843,44575844,50,-,CGCTTAGCAGACACTGAAACAAAATGGACTGTAAAGTTCGTTAGATGAAA,"Intron (Gtdc1-203/Gtdc1, intron 7 of 10)",2,44564412,44861622,297211,2,Gtdc1-203,285730,Gtdc1-203;Gtdc1-201;Gtdc1-207;Gtdc1-208;Gtdc1-205,Gtdc1;Gtdc1;Gtdc1;Gtdc1;Gtdc1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,43,227835,ENSMUSG00000036890,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6562,cg12084299,-0.0000216,0.00000798,-2.70298127,0.007250955,loss,ns,0.0000256,0.0000136,1.890976873,0.059559684,pos,ns,-0.001708237,0.003973165,-0.429943538,0.667535423,neg,ns,0.175525683,-0.000265124,0.000136637,-1.940357087,0.053242828,neg,ns,0.636137572,Zfp536,Zfp536_Intron,7,37734695,37734744,37734743,37734744,50,+,TTAAAATTAGTGATCCATTTCTTCCACTCTGCCATCTGCACTCAGCTTCG,"Intron (Zfp536-202/Zfp536, intron 1 of 6)",7,37479104,37769624,290521,2,Zfp536-202,34880,Zfp536-202;Zfp536-201;Zfp536-203;Zfp536-206;Zfp536-209;Zfp536-208;Zfp536-205;Zfp536-207,Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,73,112,243937,ENSMUSG00000043456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3679,cg18109832,0.0000192,0.0000189,1.016888359,0.309999514,gain,ns,0.0000607,0.0000321,1.890946292,0.059563781,pos,ns,0.004117609,0.009396938,0.438186316,0.661556407,pos,ns,0.17943312,-0.000388829,0.00032316,-1.203209958,0.229813153,neg,ns,0.638484421,Gm12067,Gm12067_Intergenic_upstream,11,24983064,24983113,24983064,24983065,50,-,CGAGATAAAAGCTACATTACATGAAATTAATGGAGGCTGTCTGCGACATA,Distal Intergenic,11,24552438,24553962,1525,2,Gm12067-201,-429151,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,26,58,100417843,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21754,cg23245779,0.0000031,0.00000636,0.487655003,0.62613892,gain,ns,-0.0000204,0.0000108,-1.890747592,0.059590412,neg,ns,-0.002211052,0.003165265,-0.698536054,0.485365707,neg,ns,0.313930911,-0.000150326,0.000108853,-1.380998979,0.168273994,neg,ns,0.934423315,Zfhx3,Zfhx3_Exon,8,108956909,108956958,108956909,108956910,50,-,CGGTTACCTCAAGTTCATGCAGCACCTCAGGGGTTCAGCCCTCGATGCCA,"Exon (Zfhx3-204/Zfhx3, exon 16 of 16)",8,107942644,108961630,1018987,1,Zfhx3-204,1014265,Zfhx3-204;Zfhx3-201,Zfhx3;Zfhx3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,46,177,11906,ENSMUSG00000038872,conserved gene and region,8,108956727,108956910,184,*,184,18,0.673913044,1.045454546,0.097826087,7.25E-14,CpGisland,TRUE,NA,NRS
23457,cg21474259,-0.0000122,0.00000835,-1.456119811,0.146371517,loss,ns,0.0000268,0.0000142,1.890704193,0.059596229,pos,ns,0.005278026,0.00415824,1.269293099,0.205288651,pos,ns,0.687635059,-0.000217933,0.000143002,-1.523992787,0.128529987,neg,ns,0.638692438,Rbfox3,Rbfox3_Exon,11,118502866,118502915,118502866,118502867,50,+,CGTCCCATTCAGCTTCTCCCGGGCTCGGTCAGCATCTGAGCTAGTTTCAA,"Exon (Rbfox3-205/Rbfox3, exon 7 of 14)",11,118489762,118909550,419789,2,Rbfox3-205,406635,Rbfox3-205;Rbfox3-203;Rbfox3-201;Rbfox3-202;Rbfox3-204;Rbfox3-206;Rbfox3-210;Rbfox3-209,Rbfox3;Rbfox3;Rbfox3;Rbfox3;Rbfox3;Rbfox3;Rbfox3;Rbfox3,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,13,52897,ENSMUSG00000025576,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10596,cg16895245,0.00000853,0.0000018,4.748552184,0.00000314,gain,ns,-0.00000577,0.00000305,-1.890213184,0.059662083,neg,ns,-0.000223833,0.000893967,-0.250381503,0.802458188,neg,ns,0.095577587,-0.0000257,0.0000307,-0.836183633,0.403695669,neg,ns,0.953325664,Faf2,Faf2_Exon,13,54648329,54648378,54648329,54648330,50,+,CGGGTCACTGACCCCGTTGGGGACATTGTTTCATTTATGCACTCTTTTGA,"Exon (Faf2-203/Faf2, exon 5 of 11)",13,54621784,54664063,42280,1,Faf2-203,26545,Faf2-203;Faf2-209;Faf2-201;Faf2-206;Faf2-205;Faf2-202;Faf2-208;Faf2-207,Faf2;Faf2;Faf2;Faf2;Faf2;Faf2;Faf2;Faf2,0;0;0;0;0;0;0;-3063,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,6,76577,ENSMUSG00000025873,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8530,cg11541320,0.0000288,0.0000042,6.857110026,3.81E-11,gain,yes,-0.0000135,0.00000714,-1.890005909,0.059689901,neg,ns,-0.003397398,0.002091506,-1.62437853,0.105311331,neg,ns,0.977524897,0.000197901,0.0000719,2.751420798,0.006282867,pos,ns,0.084554188,Btrc,Btrc_Intron,19,45302372,45302421,45302372,45302373,50,+,CGTTAATGTAATCAGCAGTGTGCGAAATGACTGCGCGGAAAATAGCATCA,"Intron (Gm28578-211/Gm28578-211, intron 1 of 1)",19,45363734,45507736,144003,1,Btrc-204,-61313,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,63,98,12234,ENSMUSG00000025217,mapped to different genes,19,45301752,45302408,657,*,657,54,0.611872146,0.882427559,0.082191781,2.09E-36,CpGisland,TRUE,U3,Pr-B
11637,cg18821963,0.0000615,0.00000294,20.94210736,2.67E-61,gain,yes,-0.00000942,0.00000499,-1.889828174,0.059713763,neg,ns,0.006037548,0.001460941,4.132642779,0.0000462,pos,ns,4.335406951,-0.000017,0.0000502,-0.337840497,0.735712051,neg,ns,0.045882054,Celf6,Celf6_Exon,9,59578520,59578569,59578568,59578569,50,+,TCTTCGTGGGGCAGATCCCGCGGGGCTTGGACGAGCAGGACCTCAAGCCG,Promoter (<=1kb),9,59577917,59607292,29376,1,Celf6-207,603,Celf6-207;Celf6-203;Celf6-205;Celf6-201,Celf6;Celf6;Celf6;Celf6,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,8,76183,ENSMUSG00000032297,conserved gene but different region,9,59577836,59578646,811,*,811,79,0.700369914,0.79687811,0.097410604,4.77E-59,CpGisland,TRUE,U3,Pr-B
2020,cg27306958,-0.00000151,0.00000123,-1.228798473,0.220079353,loss,ns,0.00000393,0.00000208,1.889334237,0.059780119,pos,ns,0.000673986,0.000609873,1.105123607,0.269963,pos,ns,0.568695754,-0.00000509,0.000021,-0.242486854,0.808563292,neg,ns,0.965267746,Ppp3r1,Ppp3r1_threeUTR,11,17199768,17199817,17199768,17199769,50,+,CGCTGTTCCTTCAACTGAGTGCTGCACATCATGGGCTCTGTCTGTGAGAG,3' UTR,11,17159263,17200375,41113,1,Ppp3r1-201,40505,Pno1-201;Ppp3r1-201;Ppp3r1-202;Wdr92-202,Pno1;Ppp3r1;Ppp3r1;Wdr92,11751;0;6924;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,2,19058,ENSMUSG00000033953,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1549,cg02053792,0.000044,0.00000974,4.514716544,0.00000902,gain,ns,0.0000313,0.0000165,1.889293328,0.059785617,pos,ns,0.002278998,0.004845881,0.470295843,0.638474363,pos,ns,0.194856537,0.000038,0.000166649,0.228093632,0.819723827,pos,ns,0.782772127,Gm11825,Gm11825_Promoter,4,13599875,13599924,13599923,13599924,50,-,GCGCTTGGCAGCGATCTTCACTTAATTACTGAGTGGATTATTAACATACG,Promoter (6-7kb),4,13606034,13606769,736,1,Gm11825-201,-6159,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,4,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11975,cg19360170,-0.00000135,0.00000134,-1.009032594,0.313745932,loss,ns,0.00000429,0.00000227,1.88917462,0.059801575,pos,ns,0.001355643,0.000665665,2.036525388,0.042547155,pos,ns,1.371129475,-0.0000609,0.0000229,-2.66109912,0.008194279,neg,ns,0.964180245,Lrfn5,Lrfn5_Exon,12,61840760,61840809,61840760,61840761,50,-,CGTATGTTTCAAATCCAGTACAATGGTACTTATGATGACACCCTTGTTTA,"Exon (Lrfn5-201/Lrfn5, exon 3 of 4)",12,61523948,61845258,321311,1,Lrfn5-201,316812,Lrfn5-201;Lrfn5-202,Lrfn5;Lrfn5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,4,238205,ENSMUSG00000035653,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21935,cg04691460,-0.0000198,0.00000867,-2.288832808,0.022761415,loss,ns,0.0000278,0.0000147,1.889155836,0.0598041,pos,ns,0.010221879,0.004314381,2.369257393,0.01843628,pos,ns,1.734326702,-0.000438531,0.000148371,-2.955635237,0.00335959,neg,ns,0.855427669,Faf1,Faf1_Intron,4,109759469,109759518,109759517,109759518,50,-,TATTTTGCCTTTATTACTGTTTCGATGGGAAAATACTGCAAATATTTCCG,"Intron (Faf1-201/Faf1, intron 7 of 18)",4,109676588,109963960,287373,1,Faf1-201,82881,Faf1-201;Gm12808-201,Faf1;Gm12808,0;-4652,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,24,14084,ENSMUSG00000010517,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11012,cg06602067,-0.0000397,0.00000758,-5.241763945,0.000000295,loss,yes,-0.0000243,0.0000129,-1.888982784,0.05982737,neg,ns,-0.001056571,0.003772815,-0.280048389,0.779627158,neg,ns,0.108113041,-0.000320711,0.000129747,-2.471818909,0.013979563,neg,ns,0.817099568,Gm28900,Gm28900_Intergenic_upstream,1,56257280,56257329,56257280,56257281,50,+,CGAGATTTTCCATGTGGGGAGGGCGGTCTGTCATTCCATGCCAACCCCAT,Distal Intergenic,1,56451407,56451562,156,1,Gm28900-201,-194078,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,12,102635907,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9901,cg16730450,0.00000253,0.00000362,0.698873639,0.485154987,gain,ns,0.0000116,0.00000615,1.888873477,0.059842073,pos,ns,0.004428277,0.001802729,2.456429243,0.014580565,pos,ns,1.836225637,-0.000146315,0.000062,-2.360077207,0.018890405,neg,ns,0.929577477,Gm46574,Gm46574_Intergenic_downstream,17,51464245,51464294,51464293,51464294,50,+,GTTTAACTTTTTAATTCTTGCCATAACACCAGCTGGCTCGTAATTAACCG,Distal Intergenic,17,51484292,51484721,430,2,Gm46574-201,20427,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,19,108168316,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11992,cg12826574,-0.000011,0.00000508,-2.170720087,0.030710989,loss,ns,0.0000163,0.00000863,1.888829747,0.059847955,pos,ns,0.000608049,0.002528636,0.240465093,0.810128665,pos,ns,0.091446001,0.0000464,0.000087,0.533643679,0.593970497,pos,ns,0.067421672,Fam241b,Fam241b_Intron,10,62129558,62129607,62129558,62129559,50,-,CGGGTTTATCACGGCAAAGGTAATATTGTGCTAACTATGAGTAAACAGTC,"Intron (Fam241b-201/Fam241b, intron 2 of 2)",10,62108835,62139870,31036,2,Fam241b-201,10263,Fam241b-201;Fam241b-211;Fam241b-207;Fam241b-210;Fam241b-205;Neurog3-201;Neurog3-202;Neurog3-203,Fam241b;Fam241b;Fam241b;Fam241b;Fam241b;Neurog3;Neurog3;Neurog3,0;0;0;0;14313;-3483;-3491;-3568,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,4,69894,ENSMUSG00000020083,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
18175,cg10935894,-0.000000461,0.000000974,-0.473219592,0.636389565,loss,ns,-0.00000312,0.00000165,-1.888583134,0.05988114,neg,ns,-0.000241943,0.000484525,-0.499340948,0.617893402,neg,ns,0.209086442,0.00000132,0.0000167,0.078976819,0.937102017,pos,ns,0.969716077,Ttc17,Ttc17_fiveUTR,2,94364270,94364319,94364270,94364271,50,+,CGTGCATGGTCATCTGGCATTTTGGCTTTCAGATCCATGCGAACCTCTAA,5' UTR,2,94300767,94366597,65831,2,Ttc17-201,2278,Ttc17-201;Ttc17-203;Ttc17-204;Ttc17-202;Ttc17-205,Ttc17;Ttc17;Ttc17;Ttc17;Ttc17,0;0;0;0;-1453,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,5,74569,ENSMUSG00000027194,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26458,cg00524115,0.000118917,0.0000116,10.21764674,2.58E-21,gain,yes,0.0000373,0.0000198,1.888295057,0.059919923,pos,ns,0.031125783,0.005792555,5.373412124,0.000000152,pos,ns,6.81794331,-0.000803901,0.000199205,-4.035534479,0.0000687,neg,ns,0.261626789,Ubiad1,Ubiad1_Exon,4,148444123,148444172,148444171,148444172,50,-,CAATGCCCTTGGAAAAGTCATAGTAAGTGTTGACCAAATTACCGGCCCCG,Promoter (<=1kb),4,148434495,148444771,10277,2,Ubiad1-201,599,Mtor-203;Mtor-202;Mtor-201;Ubiad1-201;Ubiad1-202,Mtor;Mtor;Mtor;Ubiad1;Ubiad1,0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,71707,ENSMUSG00000047719,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22366,cg04532770,-0.000000499,0.00000263,-0.189585542,0.84975799,loss,ns,-0.00000845,0.00000448,-1.888253283,0.059925549,neg,ns,-0.000368021,0.00131115,-0.280686075,0.779138422,neg,ns,0.108385378,-0.0000277,0.0000451,-0.613404524,0.540058696,neg,ns,0.93607615,Pdcd6ip,Pdcd6ip_Intergenic_downstream,9,113626940,113626989,113626940,113626941,50,-,CGCAATCTGCACTTGCTTATTTTGTATCTAAGCAACTGTCAGATTCCATA,Distal Intergenic,9,113655570,113657294,1725,2,Pdcd6ip-205,30354,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,18571,ENSMUSG00000032504,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23398,cg06712965,-0.0000211,0.00000445,-4.741164573,0.00000324,loss,ns,0.0000143,0.00000756,1.888122716,0.059943135,pos,ns,0.003014984,0.002215419,1.360909387,0.174530841,pos,ns,0.758127819,-0.000058,0.0000762,-0.760805227,0.44735171,neg,ns,0.921803271,Ptprf,Ptprf_Exon,4,118252060,118252109,118252060,118252061,50,+,CGGACAGCATTCTTACCTCTGATTGGTGAACCACCTGGCGAGGTAATTTG,"Exon (Ptprf-207/Ptprf, exon 7 of 10)",4,118208213,118291405,83193,2,Ptprf-201,39296,Ptprf-201;Ptprf-207,Ptprf;Ptprf,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,9,19268,ENSMUSG00000033295,conserved gene but different region,4,118251969,118252099,131,*,131,12,0.618320611,1.099300699,0.091603053,5.18E-09,CpGisland,TRUE,U11,Tr-P
17984,cg16751878,-0.00000245,0.00000323,-0.757052865,0.449593198,loss,ns,0.0000104,0.00000549,1.887926877,0.059969521,pos,ns,0.005100524,0.001607949,3.172067244,0.001665186,pos,ns,2.778537275,-0.000142639,0.0000553,-2.579500582,0.010354722,neg,ns,0.938738567,Cdk17,Cdk17_Exon,10,93239025,93239074,93239073,93239074,50,-,TCTTCTTATCCAGAGACAGGTGTGTTTGTCATAAACCATTTCACGTGTCG,"Exon (Cdk17-201/Cdk17, exon 16 of 17)",10,93160890,93241328,80439,1,Cdk17-201,78135,Cdk17-201;Cdk17-204;Cdk17-206,Cdk17;Cdk17;Cdk17,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,237459,ENSMUSG00000020015,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15504,cg07438372,-0.0000243,0.0000074,-3.279666034,0.001157603,loss,ns,-0.0000237,0.0000126,-1.887844592,0.05998061,neg,ns,-0.003344583,0.003681596,-0.908460218,0.364340823,neg,ns,0.438492165,-0.000222394,0.00012661,-1.756530499,0.0799852,neg,ns,0.804382264,Adgrv1,Adgrv1_threeUTR,13,81397357,81397406,81397405,81397406,50,-,TTATCAATTCTGGCACCACCTTTTGGGTCAAAAAGGACAATCTGGAAGCG,3' UTR,13,81095068,81633154,538087,2,Adgrv1-201,235748,Adgrv1-201;Adgrv1-204,Adgrv1;Adgrv1,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,5,110789,ENSMUSG00000069170,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6538,cg15772697,0.00000438,0.00000646,0.678215412,0.498141051,gain,ns,0.0000207,0.000011,1.887692473,0.060001115,pos,ns,0.001055281,0.003213445,0.328395655,0.742834238,pos,ns,0.129108087,-0.000116103,0.00011051,-1.050612121,0.29425508,neg,ns,0.904171805,Tenm2,Tenm2_Intergenic_upstream,11,37650219,37650268,37650267,37650268,50,+,AGCGTGTGCCAGATCTAATGGATAATGAATATATTATGTCAGTAGAACCG,Distal Intergenic,11,36944205,37235964,291760,2,Tenm2-207,-414255,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,9,84,23964,ENSMUSG00000049336,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8397,cg09684189,-0.00000268,0.00000202,-1.323676131,0.186585924,loss,ns,0.00000649,0.00000344,1.887670068,0.060004136,pos,ns,0.003680254,0.001007756,3.651928233,0.000305445,pos,ns,3.515066541,-0.000112944,0.0000347,-3.258932091,0.001242552,neg,ns,0.951025576,Zeb2,Zeb2_Intron,2,45092841,45092890,45092889,45092890,50,+,CTTTTAAATTCTGTACCACCTGTTTTGGGCAAGACATCTTAGGCAGCGCG,"Intron (Zeb2-212/Zeb2, intron 3 of 10)",2,44983632,45117395,133764,2,Zeb2-212,24505,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219;Zeb2-211,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10069,cg08714301,0.0000015,0.00000566,0.26424779,0.791764576,gain,ns,0.0000182,0.00000962,1.887255273,0.060060081,pos,ns,0.006866796,0.002817671,2.437046894,0.01536999,pos,ns,1.813326419,-0.000151666,0.0000969,-1.565189665,0.118558647,neg,ns,0.900078663,Dhx15,Dhx15_threeUTR,5,52154155,52154204,52154155,52154156,50,-,CGTACATTGTCTGCGGACATCAGGGACCTGTAGTTAATGAAGTTGTCATA,3' UTR,5,52150203,52190514,40312,2,Dhx15-201,36310,Dhx15-201;Dhx15-207;Dhx15-206;Dhx15-205;Dhx15-204,Dhx15;Dhx15;Dhx15;Dhx15;Dhx15,0;0;0;0;7429,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,14,13204,ENSMUSG00000029169,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12668,cg17655329,0.0000185,0.00000962,1.91979899,0.055800848,gain,ns,0.0000308,0.0000163,1.887015313,0.060092466,pos,ns,0.004444861,0.004785517,0.928815196,0.353707513,pos,ns,0.451355715,0.0000585,0.000164574,0.355562796,0.722409828,pos,ns,0.731486748,Gm17952,Gm17952_Intergenic_downstream,3,66490974,66491023,66490974,66490975,50,+,CGGTGACTTCCCTGAGTGCAGTGAGTGATTAATTTAGCTGGTGTCACAGG,Distal Intergenic,3,66562805,66563551,747,2,Gm17952-201,72528,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,5,100416166,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6906,cg09170982,-0.0000395,0.0000103,-3.821687218,0.000160166,loss,ns,0.0000331,0.0000175,1.88698465,0.060096605,pos,ns,0.008966645,0.005140078,1.744456969,0.082070516,pos,ns,1.085812834,-0.000540388,0.000176767,-3.0570646,0.002429772,neg,ns,0.825851912,Rims2,Rims2_Intron,15,39469132,39469181,39469180,39469181,50,-,TTTTCTTTAATTTTGCTTACCAGAGCCAAAGCCTTAGTAGAAGAACAACG,"Intron (Rims2-202/Rims2, intron 12 of 26)",15,39198332,39681940,483609,1,Rims2-202,270800,Rims2-202;Rims2-205;Rims2-201;Rims2-206,Rims2;Rims2;Rims2;Rims2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,19,116838,ENSMUSG00000037386,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21442,cg18862460,-0.0000147,0.00000378,-3.890601469,0.000122415,loss,ns,0.0000121,0.00000642,1.886587139,0.060150287,pos,ns,-0.002358879,0.001881607,-1.253651373,0.210913361,neg,ns,0.675895908,-0.0000314,0.0000647,-0.484573718,0.628320957,neg,ns,0.941052662,Gm9006,Gm9006_Intron,12,107764651,107764700,107764699,107764700,50,+,TCAGTGGGATTTTAATTAACACACAGTAATGATTCCCATTCAATGGAACG,"Intron (Gm15208-201/Gm15208-201, intron 1 of 1)",12,107613000,107613840,841,1,Gm9006-201,151651,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,4,108167974,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23119,cg09405070,0.000135003,0.0000116,11.64625293,3.02E-26,gain,yes,-0.0000372,0.0000197,-1.886537556,0.060156986,neg,ns,0.010853802,0.005769454,1.881252784,0.06087454,pos,ns,1.215564309,-0.000175286,0.000198411,-0.883446986,0.377679414,neg,ns,0.435151383,Rnf220,Rnf220_Intron,4,117312639,117312688,117312639,117312640,50,+,CGCTGCCTCAGCCCTTGCACTGATAACGAGGAAATGGGACTGACAACAAT,"Intron (Rnf220-201/Rnf220, intron 2 of 14)",4,117271463,117497052,225590,2,Rnf220-201,184364,Rnf220-201;Rnf220-202;Rnf220-207,Rnf220;Rnf220;Rnf220,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,4,117312571,117312666,96,*,96,10,0.677083333,0.909090909,0.104166667,4.18E-08,CpGisland,TRUE,NA,NRS
3154,cg09892057,-0.00000104,0.00000249,-0.417299393,0.67674828,loss,ns,0.00000797,0.00000422,1.88652533,0.060158637,pos,ns,0.000655901,0.001237302,0.530105711,0.596418121,pos,ns,0.22444917,-0.00000705,0.0000426,-0.165740577,0.868469149,neg,ns,0.93361181,Lrmda,Lrmda_Intron,14,23015883,23015932,23015931,23015932,50,+,TAACTTTGTGAGCCCCGCATTCAACTTTCCTTTGAGGTTGGTGAAAGACG,"Intron (Lrmda-201/Lrmda, intron 6 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,996171,Lrmda-201;Lrmda-206,Lrmda;Lrmda,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9177,cg10585736,-0.00000532,0.00000392,-1.356316447,0.175985508,loss,ns,0.0000126,0.00000667,1.886492368,0.060163091,pos,ns,0.00666681,0.00195293,3.413748251,0.000725955,pos,ns,3.139090308,-0.000184976,0.0000672,-2.754209604,0.006230866,neg,ns,0.916974524,Cadm1,Cadm1_Intergenic_upstream,9,47385232,47385281,47385280,47385281,50,-,ATGGTCTCACAACACATCTTAATCAGATGGTGAGTGGGTTTAATTAGCCG,Distal Intergenic,9,47530173,47853385,323213,1,Cadm1-204,-144941,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,18,77,54725,ENSMUSG00000032076,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10694,cg19861823,0.00000512,0.00000236,2.172259684,0.030593635,gain,ns,-0.00000755,0.00000401,-1.886170023,0.060206659,neg,ns,0.002181902,0.001173421,1.859436947,0.063912472,pos,ns,1.194414386,-0.000106284,0.0000404,-2.63379186,0.008867355,neg,ns,0.040558408,Zfp608,Zfp608_Exon,18,54988044,54988093,54988092,54988093,50,-,CTCACACTTTGACCCAGCGCTGAATTCATGCCAGTTGCCTCTCCAGGGCG,"Exon (Zfp608-201/Zfp608, exon 2 of 10)",18,54888048,54990166,102119,2,Zfp608-201,2073,Zfp608-201;Zfp608-203,Zfp608;Zfp608,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,32,269023,ENSMUSG00000052713,conserved gene and region,18,54987980,54988133,154,*,154,11,0.642857143,0.694831829,0.071428571,0.000000364,CpGisland,TRUE,U1,Pr-A
20241,cg18872521,0.0000537,0.00000637,8.425676473,1.36E-15,gain,yes,-0.0000204,0.0000108,-1.885914041,0.060241277,neg,ns,0.002540541,0.003170285,0.80136069,0.423536661,pos,ns,0.373108991,0.0000699,0.000109026,0.641321236,0.521787855,pos,ns,0.186574701,Hoxc10,Hoxc10_Promoter,15,102966639,102966688,102966687,102966688,50,-,ACGGCCGTCTGAATCATCAAGGCCATTTTCAAATCCCATTGGTCTAGCCG,Promoter (<=1kb),15,102966796,102971893,5098,1,Hoxc10-201,-157,Hoxc10-201;Hoxc5-202,Hoxc10;Hoxc5,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,8,21,209448,ENSMUSG00000022484,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27851,cg14987294,-0.000000694,0.000000969,-0.715657448,0.474741579,loss,ns,0.0000031,0.00000165,1.885678743,0.060273111,pos,ns,0.000670488,0.000482372,1.389981655,0.165531729,pos,ns,0.781118749,-0.0000388,0.0000166,-2.340716939,0.019880457,neg,ns,0.971286023,Ush2a,Ush2a_Intron,1,188530009,188530058,188530009,188530010,50,-,CGACACCAGTTCTGGTTTTAATTATTAAACTACGATAATGAAATGTGTGT,"Intron (Ush2a-201/Ush2a, intron 21 of 70)",1,188263034,188965041,702008,1,Ush2a-201,266975,Ush2a-201,Ush2a,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,33,36,22283,ENSMUSG00000026609,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14322,cg01824210,-0.000021,0.00000408,-5.140684278,0.000000486,loss,yes,-0.0000131,0.00000693,-1.885637501,0.060278693,neg,ns,-0.001424334,0.002030375,-0.701512548,0.483509501,neg,ns,0.315594988,0.0000349,0.0000698,0.499338254,0.617895297,pos,ns,0.917564536,Smg6,Smg6_Intron,11,75161214,75161263,75161262,75161263,50,-,GTCAGTGTGAATTCTTAGCAGATTAACTTGTCAGATTCACAGAGAAACCG,"Intron (Smg6-201/Smg6, intron 18 of 18)",11,74925823,75164448,238626,1,Smg6-201,235391,Hic1-201;Smg6-201;Smg6-202;Smg6-206,Hic1;Smg6;Smg6;Smg6,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,34,103677,ENSMUSG00000038290,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15351,cg14427328,-0.00000348,0.00000226,-1.540652936,0.124421391,loss,ns,-0.00000723,0.00000384,-1.885176861,0.060341061,neg,ns,0.003685752,0.001123715,3.27997029,0.001156398,pos,ns,2.936892756,-0.0000784,0.0000386,-2.029698467,0.043241036,neg,ns,0.949148207,Psmd11,Psmd11_threeUTR,11,80460692,80460741,80460740,80460741,50,-,CCATCACATCTCTGAAGTACATGTTGCTGTGCAAAATCATGCTCAACACG,Promoter (<=1kb),11,80460709,80471714,11006,1,Psmd11-203,0,Psmd11-214;Psmd11-201;Psmd11-204;Psmd11-208;Psmd11-211;Psmd11-215;Psmd11-209;Psmd11-210;Psmd11-212;Psmd11-205;Psmd11-203;Psmd11-213;Psmd11-202,Psmd11;Psmd11;Psmd11;Psmd11;Psmd11;Psmd11;Psmd11;Psmd11;Psmd11;Psmd11;Psmd11;Psmd11;Psmd11,0;0;0;32027;32006;0;0;32002;30805;0;0;0;0,TRUE,FALSE,TRUE,FALSE,TRUE,TRUE,TRUE,TRUE,FALSE,threeUTR,4,4,69077,ENSMUSG00000017428,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13039,cg01742897,-0.00000197,0.00000155,-1.275574801,0.203060878,loss,ns,0.00000496,0.00000263,1.884878226,0.060381523,pos,ns,0.002227176,0.000770266,2.8914388,0.004105842,pos,ns,2.386597759,-0.0000668,0.0000265,-2.520196345,0.012230914,neg,ns,0.050468978,Tcf4,Tcf4_fiveUTR,18,69344538,69344587,69344538,69344539,50,+,CGGATGTGAATGGATTACAATGTATCTTTCAGGGAAACCTATTATTATCA,5' UTR,18,69343356,69564082,220727,1,Tcf4-259,1182,Tcf4-259;Tcf4-201;Tcf4-207;Tcf4-210;Tcf4-240;Tcf4-254;Tcf4-246;Tcf4-206;Tcf4-202;Tcf4-257;Tcf4-232;Tcf4-215;Tcf4-248;Tcf4-231;Tcf4-205;Tcf4-253;Tcf4-244;Tcf4-233;Tcf4-238;Tcf4-245;Tcf4-249;Tcf4-219;Tcf4-235;Tcf4-227,Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,12,66,21413,ENSMUSG00000053477,conserved gene and region,18,69344226,69344539,314,*,314,34,0.681528662,0.937725077,0.108280255,2.04E-27,CpGisland,TRUE,NA,NRS
3862,cg15353626,-0.00000882,0.0000038,-2.320977707,0.020936467,loss,ns,0.0000122,0.00000646,1.884778359,0.060395059,pos,ns,0.002271513,0.001891581,1.200854175,0.230724518,pos,ns,0.636906252,-0.0000186,0.0000651,-0.286660626,0.774563682,neg,ns,0.058458082,Dmrt3,Dmrt3_Intron,19,25615964,25616013,25615964,25615965,50,+,CGAATCTGATAGCAATAACTTTCGGAGAAGGTCAGGCTCAAGTGAAATGT,"Intron (Dmrt3-201/Dmrt3, intron 1 of 1)",19,25610537,25623921,13385,1,Dmrt3-201,5427,Dmrt3-201,Dmrt3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,5,240590,ENSMUSG00000042372,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
13282,cg03030405,-0.0000144,0.00000831,-1.735324211,0.083677166,loss,ns,0.0000266,0.0000141,1.884614314,0.060417299,pos,ns,0.006290647,0.004136467,1.52077788,0.129334884,pos,ns,0.888284321,-0.000207721,0.000142253,-1.460226813,0.145240436,neg,ns,0.62534976,Ank3,Ank3_threeUTR,10,69994373,69994422,69994421,69994422,50,-,TCCACAGAGTCCATGTGAACGGACAGATATCAGGATGGCAATAGTAGCCG,3' UTR,10,69398996,70023957,624962,1,Ank3-247,595377,Ank3-247;Ank3-231;Ank3-210;Ank3-239;Ank3-240;Ank3-220;Ank3-201;Ank3-202;Ank3-203;Ank3-204;Ank3-206;Ank3-233;Ank3-221;Ank3-232;Ank3-228;Ank3-205;Ank3-215;Ank3-237;Ank3-242;Ank3-208;Ank3-227;Ank3-207;Ank3-230;Ank3-219;Ank3-244;Ank3-213;Ank3-224;Ank3-236;Ank3-225;Ank3-243;Ank3-235,Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,13,11735,ENSMUSG00000069601,conserved gene and region,10,69994294,69994422,129,*,129,11,0.480620155,1.555921053,0.085271318,5.89E-08,CpGisland,TRUE,NA,NRS
15229,cg04801716,0.0000167,0.00000267,6.241876401,1.42E-09,gain,yes,0.00000855,0.00000454,1.88407377,0.060490631,pos,ns,0.000428014,0.001328857,0.322091633,0.74760037,pos,ns,0.126330492,0.0000872,0.0000457,1.907033606,0.057440413,pos,ns,0.055156425,Cbx6,Cbx6_fiveUTR,15,79834186,79834235,79834186,79834187,50,+,CGCTCGCCCACTGCAGACAGCTCCATCTTGCTCAGCGGCACCCACAGCCC,Promoter (<=1kb),15,79827837,79834226,6390,2,Cbx6-201,0,Cbx6-203;Cbx6-208;Cbx6-202;Cbx6-201;Cbx6-206;Cbx6-207;Cbx6-204;Cbx6-205;Npcd-201;Npcd-202,Cbx6;Cbx6;Cbx6;Cbx6;Cbx6;Cbx6;Cbx6;Cbx6;Npcd;Npcd,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,4,494448,ENSMUSG00000089715,conserved gene but different region,15,79834018,79834527,510,*,510,64,0.733333333,0.933638444,0.125490196,9.09E-56,CpGisland,TRUE,U1,Pr-A
8770,cg25816645,0.0000031,0.00000185,1.6747228,0.094997087,gain,ns,-0.00000592,0.00000314,-1.884008602,0.060499477,neg,ns,-0.000768756,0.000920375,-0.835264163,0.404212259,neg,ns,0.393390519,0.0000423,0.0000317,1.33661729,0.182327732,pos,ns,0.953570796,Lcorl,Lcorl_Intron,5,45734505,45734554,45734505,45734506,50,+,CGATGGTAAACTGATGCATGAGAGACTCTCACACAGCTATGGAAGGGGAG,"Intron (Lcorl-202/Lcorl, intron 6 of 6)",5,45697181,45857615,160435,2,Lcorl-202,123061,Lcorl-202;Lcorl-212;Lcorl-210;Lcorl-205;Lcorl-204;Lcorl-201,Lcorl;Lcorl;Lcorl;Lcorl;Lcorl;Lcorl,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,9,209707,ENSMUSG00000015882,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13460,cg16888382,-0.0000889,0.000013,-6.840718735,4.21E-11,loss,yes,0.0000416,0.0000221,1.883840528,0.060522296,pos,ns,0.014117931,0.006469161,2.182343335,0.029834545,pos,ns,1.525280586,-0.001021464,0.000222474,-4.591389312,0.00000641,neg,ns,0.852891878,Gm7656,Gm7656_Intergenic_downstream,7,70650068,70650117,70650116,70650117,50,+,TGCAATCTGGTTTATGTTCTGGCATGTGGCAATCATTGGCTTGATAGCCG,Distal Intergenic,7,70490848,70491851,1004,1,Gm7656-201,159220,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,4,665486,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22257,cg11758841,-0.000012,0.00000575,-2.079594353,0.038384313,loss,ns,-0.0000184,0.00000977,-1.883835036,0.060523042,neg,ns,-0.001986251,0.002862076,-0.69398966,0.488208404,neg,ns,0.311394749,-0.0000681,0.0000984,-0.691701048,0.489642797,neg,ns,0.938673625,Parva,Parva_Exon,7,112572895,112572944,112572895,112572896,50,-,CGGCAAATCCAAGAGGAAATAACTGGTAACACAGAGTATGTCAACACCAT,"Exon (Parva-203/Parva, exon 8 of 14)",7,112427505,112589629,162125,1,Parva-203,145390,Parva-203;Parva-201;Parva-202;Parva-204,Parva;Parva;Parva;Parva,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,6,57342,ENSMUSG00000030770,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2684,cg22758731,0.000165818,0.0000267,6.21568039,1.65E-09,gain,yes,-0.0000854,0.0000453,-1.883729532,0.06053737,neg,ns,0.03317375,0.013277638,2.498467726,0.012990679,pos,ns,1.886368146,-0.000877269,0.000456617,-1.921235949,0.055618765,neg,ns,0.294063979,Adk,Adk_Intron,14,21369233,21369282,21369281,21369282,50,+,ACTTGGCAGTCGTCATGGTTTCTTTGTTCTGCCAGCACAGTGTTATGACG,"Intron (Adk-201/Adk, intron 8 of 10)",14,21052574,21448569,395996,1,Adk-201,316659,Adk-201;Adk-206;Adk-207;Adk-209,Adk;Adk;Adk;Adk,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,10,11534,ENSMUSG00000039197,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11441,cg07345031,0.000141608,0.0000118,11.99381982,1.75E-27,gain,yes,-0.0000378,0.0000201,-1.883495198,0.060569204,neg,ns,0.015556507,0.00587633,2.647316609,0.008528027,pos,ns,2.069151424,-0.000520857,0.000202087,-2.577396078,0.010416625,neg,ns,0.222996826,Sstr1,Sstr1_Exon,12,58213005,58213054,58213005,58213006,50,+,CGGTCAACATGTTCACCAGCATCTACTGTCTGACTGTGCTCAGCGTGGAC,"Exon (Sstr1-202/Sstr1, exon 2 of 2)",12,58211772,58213887,2116,1,Sstr1-202,1233,Sstr1-202;Sstr1-201,Sstr1;Sstr1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,20605,ENSMUSG00000035431,conserved gene and region,12,58212922,58213006,85,*,85,9,0.658823529,0.987096774,0.105882353,0.000000223,CpGisland,TRUE,U3,Pr-B
13333,cg22437098,-0.0000164,0.00000716,-2.294529252,0.02242823,loss,ns,0.0000229,0.0000122,1.883441222,0.060576539,pos,ns,-0.001135996,0.003561886,-0.318931112,0.749993538,neg,ns,0.124942478,0.000193324,0.000122493,1.578243603,0.115529495,pos,ns,0.787665428,Ccar2,Ccar2_Exon,14,70151613,70151662,70151661,70151662,50,-,GGGTTGTATGCAGCCTTCACCAGCACCTTCTCACCCAGCTGGGGCAGACG,"Exon (Ccar2-201/Ccar2, exon 5 of 21)",14,70138168,70153811,15644,2,Ccar2-201,2149,9930012K11Rik-201;9930012K11Rik-205;9930012K11Rik-204;9930012K11Rik-202;9930012K11Rik-203;Ccar2-201,9930012K11Rik;9930012K11Rik;9930012K11Rik;9930012K11Rik;9930012K11Rik;Ccar2,7840;7840;5256;4805;5148;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,219158,ENSMUSG00000033712,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3281,cg12712534,0.000049,0.0000119,4.122533946,0.0000482,gain,ns,0.000038,0.0000202,1.883274492,0.0605992,pos,ns,0.00278065,0.005916196,0.47000636,0.638680938,pos,ns,0.194716046,0.000377045,0.000203457,1.853187668,0.064805536,pos,ns,0.81925485,Cdh18,Cdh18_Exon,15,23460423,23460472,23460471,23460472,50,+,AGCAGCAGCACCCTCACCATCAGGGTTTGTGCATGCGAGAGAGATGGGCG,"Exon (Cdh18-203/Cdh18, exon 11 of 12)",15,23036463,23474418,437956,1,Cdh18-203,423960,Cdh18-203;Cdh18-204;Cdh18-207;Cdh18-205,Cdh18;Cdh18;Cdh18;Cdh18,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,4,320865,ENSMUSG00000040420,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27548,cg19834200,-0.00000833,0.00000165,-5.05255489,0.000000746,loss,yes,0.00000527,0.0000028,1.883212332,0.06060765,pos,ns,0.001063233,0.000820287,1.296172406,0.195880225,pos,ns,0.708009406,-0.0000361,0.0000282,-1.278533426,0.202017768,neg,ns,0.962248482,Tshz2,Tshz2_Intron,2,169811710,169811759,169811710,169811711,50,-,CGTGTCCCCTTTAAGAGACTCCAGAATTAAATGTTCCCGTATGTGAATTT,"Intron (Tshz2-202/Tshz2, intron 1 of 2)",2,169633013,169913093,280081,1,Tshz2-202,178697,Tshz2-202;Tshz2-201,Tshz2;Tshz2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,21,30,228911,ENSMUSG00000047907,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
617,cg04220619,-0.00000432,0.00000293,-1.471702876,0.142115548,loss,ns,-0.00000939,0.00000499,-1.882916036,0.060647943,neg,ns,-0.004344877,0.001460457,-2.975011667,0.003160058,neg,ns,2.500304981,0.0000918,0.0000502,1.826797887,0.068691638,pos,ns,0.883322135,Mark2,Mark2_Exon,19,7278053,7278102,7278101,7278102,50,+,CACTCGGTCTTTGCTTTCAGGTTCATTCAGGTTCCTCAAAAAACAGAGCG,Promoter (<=1kb),19,7276852,7278094,1243,2,Mark2-218,0,Mark2-202;Mark2-206;Mark2-201;Mark2-221;Mark2-209;Mark2-203;Mark2-211;Mark2-207;Mark2-218;Mark2-215;Mark2-212;Mark2-208;Mark2-219;Mark2-204;Mark2-205;Rcor2-201;Rcor2-202,Mark2;Mark2;Mark2;Mark2;Mark2;Mark2;Mark2;Mark2;Mark2;Mark2;Mark2;Mark2;Mark2;Mark2;Mark2;Rcor2;Rcor2,0;0;0;0;0;0;0;0;0;0;0;0;0;3839;5008;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,10,13728,ENSMUSG00000024969,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20765,cg17894145,-0.00000231,0.00000256,-0.901101515,0.36823387,loss,ns,0.00000819,0.00000435,1.882746198,0.060671049,pos,ns,0.002314101,0.001274687,1.815427654,0.070424327,pos,ns,1.152277297,-0.0000775,0.0000438,-1.767004529,0.078211382,neg,ns,0.944835529,Gm5671,Gm5671_Intergenic_downstream,14,105070344,105070393,105070344,105070345,50,+,CGACACAAATTAGAAATTCAAGAGTTTTAACAAATGAGCCTGCAAATGTA,Distal Intergenic,14,105043450,105044354,905,1,Gm5671-201,26894,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,12,435420,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5745,cg15658912,0.0000866,0.00000967,8.957218608,3.16E-17,gain,yes,-0.0000309,0.0000164,-1.882588324,0.060692534,neg,ns,0.008014553,0.004810474,1.666063142,0.096710929,pos,ns,1.014524446,-0.000177763,0.000165432,-1.074538761,0.283416929,neg,ns,0.069788706,Sox2,Sox2_Exon,3,34651075,34651124,34651075,34651076,50,+,CGGCTCGCCCACCTACAGCATGTCCTACTCGCAGCAGGGCACCCCTGGCA,Promoter (<=1kb),3,34650405,34652461,2057,1,Sox2-201,670,Sox2-201,Sox2,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,62,20674,ENSMUSG00000074637,mapped to different genes,3,34650151,34651388,1238,*,1238,126,0.673667205,0.899335824,0.10177706,2.40E-96,CpGisland,TRUE,NA,NRS
2846,cg15916108,0.000151205,0.0000144,10.48932339,3.14E-22,gain,yes,0.0000461,0.0000245,1.882572807,0.060694646,pos,ns,0.018364141,0.00717456,2.55961922,0.01095287,pos,ns,1.960472059,0.0000459,0.000246733,0.185958851,0.852598652,pos,ns,0.365009705,Zfp503,Zfp503_threeUTR,14,21984020,21984069,21984068,21984069,50,+,CATTGTCTATTATTTTAGTACATGACGTAAACCTTGTCCCCTTCTCAGCG,3' UTR,14,21983959,21989601,5643,2,Zfp503-201,5532,Zfp503-201,Zfp503,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,27,218820,ENSMUSG00000039081,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
26030,cg15790768,-0.00000316,0.0000016,-1.972858156,0.049399927,loss,ns,0.00000512,0.00000272,1.882505585,0.060703796,pos,ns,0.001566982,0.000796574,1.967152874,0.050057081,pos,ns,1.300534479,-0.0000665,0.0000274,-2.428208148,0.015742369,neg,ns,0.958695489,Gm2574,Gm2574_Intron,3,143254731,143254780,143254779,143254780,50,-,AGAATGATCACACATCATTTCCCATCGATTGAAATGCCAAATCCTTGACG,"Intron (A830019L24Rik-201/A830019L24Rik-201, intron 2 of 3)",3,142962611,142963612,1002,1,Gm2574-201,292169,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,19,100040053,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4603,cg07301914,-0.00000275,0.00000262,-1.048518981,0.295216327,loss,ns,0.00000838,0.00000445,1.882273689,0.060735371,pos,ns,0.002322931,0.001304739,1.780380636,0.075993007,pos,ns,1.119226372,-0.0000708,0.0000449,-1.577262268,0.115755066,neg,ns,0.947867985,Myt1l,Myt1l_threeUTR,12,29922389,29922438,29922389,29922390,50,+,CGGCACTTTATACTGTTCACTGTACAAAAGCTTACAGTTTTCCACAAGGA,3' UTR,12,29528384,29923213,394830,1,Myt1l-202,394005,Myt1l-205;Myt1l-202;Myt1l-201;Myt1l-209,Myt1l;Myt1l;Myt1l;Myt1l,0;0;0;27275,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,4,17933,ENSMUSG00000061911,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6154,cg19217922,-0.0000324,0.00000786,-4.123009841,0.0000481,loss,ns,0.0000251,0.0000133,1.881901239,0.060786112,pos,ns,-0.006394698,0.003909961,-1.635489069,0.102961472,neg,ns,0.987325258,0.000129093,0.000134463,0.960063224,0.337771598,pos,ns,0.830222776,Rpl17-ps9,Rpl17-ps9_Intergenic_downstream,7,36157171,36157220,36157171,36157172,50,+,CGCTGAAAATCAGGCTTGTTATGGCTCTGGTACGTCTATAAAGATTGTTC,Distal Intergenic,7,36118274,36118828,555,1,Rpl17-ps9-201,38897,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,22,100043872,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2786,cg14343580,0.0000464,0.00000805,5.769382306,1.93E-08,gain,yes,0.0000257,0.0000137,1.881882299,0.060788694,pos,ns,-0.001321073,0.004006967,-0.329694051,0.741853812,neg,ns,0.129681667,0.00020383,0.000137799,1.479179661,0.140107728,pos,ns,0.424692719,Klhl14,Klhl14_Intergenic_upstream,18,21714324,21714373,21714372,21714373,50,-,TCCAACCTGTTTATCCTTAAGCAATGCAAAGCCATGCAGTGCTACAGACG,Distal Intergenic,18,21550379,21654718,104340,2,Klhl14-202,-59655,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,38,225266,ENSMUSG00000042514,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21305,cg17061244,0.000127453,0.0000143,8.943624822,3.49E-17,gain,yes,-0.0000456,0.0000242,-1.881464545,0.060845651,neg,ns,0.015884556,0.007092715,2.239559309,0.025828318,pos,ns,1.587903868,-0.000438211,0.000243918,-1.796550672,0.073380414,neg,ns,0.096103588,Lin7a,Lin7a_fiveUTR,10,107271892,107271941,107271892,107271893,50,+,CGGCAGACATGGCGACATTGACAGTGGTCCAGCCGCTCACCCTGGACAGA,Promoter (<=1kb),10,107271686,107421474,149789,1,Lin7a-201,206,Lin7a-201;Lin7a-202;Lin7a-203,Lin7a;Lin7a;Lin7a,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,4,108030,ENSMUSG00000019906,conserved gene but different region,10,107271798,107272033,236,*,236,17,0.63559322,0.742962963,0.072033898,6.88E-11,CpGisland,TRUE,U2,Pr-W
19403,cg23580273,-0.0000181,0.00000786,-2.30857084,0.021625071,loss,ns,0.0000251,0.0000133,1.881427559,0.060850696,pos,ns,-0.006041398,0.003910872,-1.544770036,0.123422097,neg,ns,0.90860708,0.000134552,0.000134495,1.000426254,0.317884523,pos,ns,0.656145137,Efnb1,Efnb1_Intergenic_downstream,X,99242139,99242188,99242187,99242188,50,-,CATGTGTTTGATCAGCTGAGGCCAAATCCACAGCCTTCTAGGAAATGGCG,Distal Intergenic,20,99138131,99147230,9100,1,Efnb1-202,104057,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,14,13641,ENSMUSG00000031217,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25150,cg19254948,-0.000113912,0.0000193,-5.899136248,9.56E-09,loss,yes,-0.0000617,0.0000328,-1.881182539,0.060884125,neg,ns,-0.034652708,0.009610757,-3.605616751,0.000362772,neg,ns,3.440366636,0.000529715,0.000330513,1.602705329,0.110018118,pos,ns,0.686069663,Ahdc1,Ahdc1_Intergenic_downstream,4,133087954,133088003,133087954,133087955,50,+,CGGCTGGGGCCCCACAGTCCCATCAGCCCAAGCAGTGAGCAGAAGGAGGA,Distal Intergenic,4,133066249,133072063,5815,1,Ahdc1-208,21705,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,49,230793,ENSMUSG00000037692,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3487,cg13948651,0.0000289,0.00000585,4.937475405,0.0000013,gain,yes,-0.0000187,0.00000994,-1.880989007,0.060910541,neg,ns,0.000356947,0.002912906,0.122539807,0.902550924,pos,ns,0.044528285,0.0000209,0.000100175,0.208817102,0.834728162,pos,ns,0.800014619,Bcl11a,Bcl11a_Exon,11,24164655,24164704,24164703,24164704,50,+,CCAGGCAGCTCAAAGATCCCTTCCTTAGCTTCGGAGACTCCAGACAATCG,"Exon (Bcl11a-201/Bcl11a, exon 4 of 5)",11,24078056,24173194,95139,1,Bcl11a-201,86599,Bcl11a-201;Bcl11a-203;Bcl11a-202;Bcl11a-204;Bcl11a-206,Bcl11a;Bcl11a;Bcl11a;Bcl11a;Bcl11a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,51,98,14025,ENSMUSG00000000861,conserved gene but different region,11,24164541,24164882,342,*,342,25,0.628654971,0.74025974,0.073099415,6.44E-16,CpGisland,TRUE,U10,Tr-S
7167,cg04102082,0.0000107,0.00000234,4.563575928,0.00000726,gain,ns,-0.00000747,0.00000397,-1.880982848,0.060911382,neg,ns,-0.001896215,0.001162719,-1.630845116,0.103938513,neg,ns,0.983223503,0.0000239,0.00004,0.598507091,0.549938679,pos,ns,0.920843729,Lcor,Lcor_Exon,19,41558393,41558442,41558441,41558442,50,+,ACCAGGGAAGGTTTTGGACACTCCACATCACTCAAAGTTCCACTGGCTCG,"Exon (Lcor-201/Lcor, exon 8 of 8)",19,41482637,41562261,79625,1,Lcor-201,75756,Lcor-201;Lcor-204;Lcor-206;Lcor-202;Lcor-205,Lcor;Lcor;Lcor;Lcor;Lcor,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,25,212391,ENSMUSG00000025019,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7558,cg23845594,0.000000683,0.000000876,0.77932679,0.436381769,gain,ns,-0.0000028,0.00000149,-1.880979225,0.060911876,neg,ns,0.001452767,0.000435954,3.33238969,0.000965275,pos,ns,3.015348977,-0.000046,0.000015,-3.066206305,0.002358835,neg,ns,0.97563381,Zbtb20,Zbtb20_Intron,16,43191197,43191246,43191245,43191246,50,+,CCAGGTCCATCTTTGGGCCAAGATATGTAGTCGCCAACAGTGAGTTGGCG,"Intron (Zbtb20-209/Zbtb20, intron 4 of 7)",16,42875881,43463175,587295,1,Zbtb20-209,315316,Zbtb20-209;Zbtb20-211;Zbtb20-217;Zbtb20-218;Zbtb20-204,Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,98,56490,ENSMUSG00000022708,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13050,cg12474165,0.0000045,0.00000327,1.377287036,0.169417144,gain,ns,-0.0000104,0.00000555,-1.880552239,0.060970191,neg,ns,-0.000550862,0.001626496,-0.338680311,0.735079855,neg,ns,0.133665479,-0.0000241,0.0000559,-0.430945599,0.666807421,neg,ns,0.871921169,Chd3,Chd3_Exon,11,69345605,69345654,69345605,69345606,50,+,CGCTCAGCAACTCCTCCAGCTGGTTCAGAACTGGGGCCCGGGCCACAGAG,Promoter (<=1kb),11,69343273,69346019,2747,2,Chd3-205,365,Chd3-205;Chd3-203;Chd3-202;Chd3-211;Chd3-201;Chd3-204;Chd3-208;Rnf227-201;Rnf227-203;Rnf227-202,Chd3;Chd3;Chd3;Chd3;Chd3;Chd3;Chd3;Rnf227;Rnf227;Rnf227,0;0;0;0;0;0;0;5144;4834;4796,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,22,26,216848,ENSMUSG00000018474,conserved gene but different region,11,69345353,69345644,292,*,292,17,0.609589041,0.656613757,0.058219178,1.94E-09,CpGisland,TRUE,NA,NRS
4943,cg20455095,0.0000371,0.0000135,2.741062358,0.00647947,gain,ns,-0.0000432,0.000023,-1.880532833,0.060972842,neg,ns,0.056911829,0.006735882,8.449053808,1.16E-15,pos,yes,14.93662859,-0.001310585,0.000231646,-5.6576965,3.49E-08,neg,yes,0.683952869,Marchf6,Marchf6_Exon,15,31505684,31505733,31505732,31505733,50,-,CTTGGTGTAAAAGCAAATCTGTGCTTGCATAATTCACAGTATTCTTTTCG,"Exon (Marchf6-201/Marchf6, exon 3 of 26)",15,31455891,31531053,75163,2,Marchf6-201,25320,Marchf6-201;Marchf6-202;Marchf6-204,Marchf6;Marchf6;Marchf6,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,7,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18588,cg03809346,0.0000173,0.0000128,1.358911489,0.175162499,gain,ns,0.0000408,0.0000217,1.880330242,0.061000528,pos,ns,0.0009116,0.006351617,0.143522553,0.88597075,pos,ns,0.052580616,0.00000237,0.000218432,0.010838131,0.991359564,pos,ns,0.221752904,Hoxb5,Hoxb5_fiveUTR,11,96303532,96303581,96303580,96303581,50,+,AATTCATTAATACATCATAAATCGTGAAGCACAGGGTTATAACGACCACG,Promoter (<=1kb),11,96303336,96306121,2786,1,Hoxb5-202,196,Hoxb5-202;Hoxb5-201;Hoxb6-202;Hoxb6-201,Hoxb5;Hoxb5;Hoxb6;Hoxb6,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,34,15413,ENSMUSG00000038700,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
12740,cg19532953,-0.00000676,0.00000589,-1.148052138,0.251832192,loss,ns,-0.0000188,0.00001,-1.880133058,0.061027485,neg,ns,-0.009267772,0.002931247,-3.161716937,0.001723573,neg,ns,2.763570275,0.000268013,0.000100805,2.658717432,0.008251099,pos,ns,0.896177979,Tpm1,Tpm1_Exon,9,67029701,67029750,67029701,67029702,50,+,CGCTGATGGCTTTGTACTTCAGTTTCTGAGCGTACAGCTCGTCTATGACC,"Exon (Tpm1-205/Tpm1, exon 9 of 10)",9,67022590,67043907,21318,2,Tpm1-212,14157,Tpm1-212;Tpm1-215;Tpm1-216;Tpm1-211;Tpm1-209;Tpm1-202;Tpm1-218;Tpm1-214;Tpm1-213;Tpm1-220;Tpm1-210;Tpm1-208;Tpm1-205;Tpm1-203;Tpm1-206;Tpm1-207;Tpm1-204;Tpm1-201;Tpm1-221;Tpm1-217;Tpm1-219,Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,10,22003,ENSMUSG00000032366,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22548,cg04327611,0.0000132,0.000006,2.206988114,0.028047449,gain,ns,0.0000192,0.0000102,1.880064673,0.061036836,pos,ns,0.013077282,0.002987008,4.378053164,0.0000164,pos,ns,4.785360523,-0.000321826,0.000102723,-3.132950572,0.001895929,neg,ns,0.063038069,Gm49395,Gm49395_Exon,13,115089597,115089646,115089597,115089598,50,+,CGGTTGGGCTCCAGCTCGATGGTGTGGTAAGCCCCCATCTTGACATACTC,"Exon (Gm10734-201/Gm10734-201, exon 1 of 2)",13,115035273,115101624,66352,2,Gm49395-201,11978,Gm49395-201;Gm49395-202;Gm49395-204;Gm49395-203;Itga1-201;Itga1-206;Itga1-203;Itga1-202;Itga1-204;Itga1-205;Pelo-201,Gm49395;Gm49395;Gm49395;Gm49395;Itga1;Itga1;Itga1;Itga1;Itga1;Itga1;Pelo,0;0;0;12074;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
27349,cg16827783,-0.00000737,0.0000126,-0.586797441,0.557766833,loss,ns,0.0000401,0.0000213,1.879951341,0.061052336,pos,ns,0.002655275,0.006247915,0.424985774,0.671141878,pos,ns,0.173185661,0.000328957,0.000214865,1.530992386,0.126791074,pos,ns,0.727689254,Cdh22,Cdh22_Intron,2,165173032,165173081,165173080,165173081,50,+,CATTTTCATATTTCATTAGCCGATTAATGGGCATCTCTCTCTTTTTGGCG,"Intron (Cdh22-201/Cdh22, intron 2 of 11)",2,165111507,165234853,123347,2,Cdh22-201,61772,Cdh22-201;Cdh22-202,Cdh22;Cdh22,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,23,104010,ENSMUSG00000053166,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15170,cg24507316,0.0000203,0.00000862,2.354142106,0.019189208,gain,ns,0.0000275,0.0000146,1.879946878,0.061052947,pos,ns,0.011337536,0.004288739,2.643559679,0.008621096,pos,ns,2.064437504,-0.000223485,0.000147489,-1.515259148,0.130725741,neg,ns,0.172194382,Kcnj4,Kcnj4_Intron,15,79502984,79503033,79502984,79502985,50,-,CGACAGATTGCGTGAGCCAAATTTGGCATCCTAGGGGGAGAGGCATGAAA,"Intron (Kcnj4-201/Kcnj4, intron 1 of 1)",15,79483714,79505241,21528,2,Kcnj4-201,2208,Kcnj4-201,Kcnj4,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,9,16520,ENSMUSG00000044216,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
3772,cg12749148,-0.00000364,0.00000227,-1.602727106,0.110013307,loss,ns,0.00000725,0.00000385,1.879858281,0.061065066,pos,ns,0.00246424,0.001129328,2.182041588,0.029857022,pos,ns,1.524953518,-0.0000869,0.0000388,-2.238509234,0.025897409,neg,ns,0.950186253,Kmt2c,Kmt2c_Exon,5,25315820,25315869,25315868,25315869,50,+,TCAAGTTTCTGTGTGGCTTCAATTTTAGCTTGCTGCTTACTTTTCTGACG,"Exon (Kmt2c-201/Kmt2c, exon 36 of 59)",5,25273609,25498745,225137,2,Kmt2c-201,182876,Kmt2c-201;Kmt2c-205,Kmt2c;Kmt2c,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,4,231051,ENSMUSG00000038056,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10656,cg02855204,-0.00000981,0.00000569,-1.723108994,0.085865995,loss,ns,-0.0000182,0.00000967,-1.879789237,0.061074512,neg,ns,-0.005708488,0.002833774,-2.014446877,0.044825965,neg,ns,1.348470352,0.000125906,0.0000975,1.291960694,0.197333075,pos,ns,0.931333525,Bcl2l2,Bcl2l2_threeUTR,14,54885381,54885430,54885429,54885430,50,-,CAGGCGGAGTTCACAGCTCTATACGGGGACGGGGCCCTGGAGGAGGCGCG,3' UTR,14,54883377,54888234,4858,1,Bcl2l2-201,2004,Bcl2l2-201;Bcl2l2-202;Bcl2l2-204;Bcl2l2-203;Bcl2l2-205;Gm20521-201,Bcl2l2;Bcl2l2;Bcl2l2;Bcl2l2;Bcl2l2;Gm20521,0;2000;0;0;1874;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,4,12050,ENSMUSG00000022194,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9812,cg12197907,-0.00000785,0.00000286,-2.746573455,0.006374188,loss,ns,0.00000913,0.00000486,1.879424934,0.061124374,pos,ns,0.002532144,0.001422799,1.779692393,0.076105877,pos,ns,1.118581807,-0.0000991,0.0000489,-2.025318726,0.043691228,neg,ns,0.934701154,Gm43015,Gm43015_Promoter,5,50916175,50916224,50916223,50916224,50,-,CTCTGAGCCCAGTTACAATAACTAGTAATTATAAAAATTGCTTGCCTTCG,Promoter (5-6kb),5,50921342,50921906,565,1,Gm43015-201,-5167,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,4,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8966,cg08215774,0.000000228,0.00000416,0.054709916,0.956404811,gain,ns,0.0000133,0.00000707,1.879302309,0.061141165,pos,ns,0.000813226,0.00207021,0.392822904,0.694720266,pos,ns,0.158190032,0.0000596,0.0000712,0.837671409,0.402860626,pos,ns,0.941235635,Kcnc1,Kcnc1_threeUTR,7,46437428,46437477,46437476,46437477,50,-,ATGCAGGTTTGCCGGACGAGTCCGAGTGGCCCAGGCATTGTACTAGGACG,3' UTR,7,46397648,46438704,41057,1,Kcnc1-203,39780,Kcnc1-201;Kcnc1-203,Kcnc1;Kcnc1,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,14,16502,ENSMUSG00000058975,conserved gene and region,7,46437407,46437524,118,*,118,10,0.542372881,1.162561576,0.084745763,0.000000309,CpGisland,TRUE,U15,NS
24529,cg05388859,-0.00000347,0.00000603,-0.574695183,0.565914283,loss,ns,0.0000193,0.0000102,1.879288845,0.061143009,pos,ns,0.002431757,0.003002179,0.80999725,0.418563082,pos,ns,0.378239079,0.0000498,0.000103245,0.482500383,0.629791047,pos,ns,0.060382635,Nckap5,Nckap5_Promoter,1,126830814,126830863,126830814,126830815,50,+,CGAAAGAATCCATTTGGCAGTCGTTTACATGTGAAGCACGCCCAGGGCAG,Promoter (<=1kb),1,126222627,126830799,608173,2,Nckap5-209,-15,Nckap5-202;Nckap5-204;Nckap5-209;Nckap5-210,Nckap5;Nckap5;Nckap5;Nckap5,0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,2,210356,ENSMUSG00000049690,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8747,cg16723921,-0.00000988,0.00000218,-4.529189465,0.00000846,loss,ns,-0.00000696,0.00000371,-1.878934727,0.061191521,neg,ns,-0.003270009,0.001085896,-3.011347621,0.002814871,neg,ns,2.550541495,0.0000132,0.0000373,0.354392098,0.723286,pos,ns,0.95264517,Dscaml1,Dscaml1_threeUTR,9,45685296,45685345,45685296,45685297,50,-,CGCCACGTCCTAGAAGAGGACATCGGCTACTACCTCTGCCAGGCCAGCAA,3' UTR,9,45430291,45753262,322972,1,Dscaml1-211,255005,Dscaml1-211;Dscaml1-201;Dscaml1-210;Dscaml1-205,Dscaml1;Dscaml1;Dscaml1;Dscaml1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,32,114873,ENSMUSG00000032087,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8868,cg14682166,-0.00000756,0.00000516,-1.465139306,0.14389637,loss,ns,-0.0000165,0.00000876,-1.878927057,0.061192572,neg,ns,-0.002483769,0.002567577,-0.967359326,0.334118516,neg,ns,0.476099456,-0.000125392,0.0000883,-1.420087042,0.156587236,neg,ns,0.877610267,Gtpbp2,Gtpbp2_threeUTR,17,46165133,46165182,46165133,46165134,50,+,CGAACCTCCAGCATCAGCTTCGAGATCCTGGGCTTTAACAGCAAGGGAGA,3' UTR,17,46161032,46169368,8337,1,Gtpbp2-211,4101,Gtpbp2-211;Gtpbp2-201;Gtpbp2-203;Gtpbp2-217;Gtpbp2-206;Gtpbp2-204;Gtpbp2-216;Gtpbp2-209;Gtpbp2-215;Gtpbp2-214;Gtpbp2-212;Gtpbp2-202;Gtpbp2-205;Gtpbp2-213;Gtpbp2-210;Gtpbp2-208;Gtpbp2-207,Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2,0;0;4084;0;4022;3972;3838;2100;0;0;0;0;0;-1685;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,7,7,56055,ENSMUSG00000023952,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11345,cg10919992,0.0000903,0.00000743,12.14988551,4.80E-28,gain,yes,-0.0000237,0.0000126,-1.878551604,0.061244043,neg,ns,0.004710138,0.003699779,1.273086284,0.203941293,pos,ns,0.690494833,0.000173416,0.000127235,1.362955282,0.17388578,pos,ns,0.110112491,Pcdh7,Pcdh7_fiveUTR,5,57718840,57718889,57718888,57718889,50,+,CGAGCGGGCGATTAGCACCCATTGCATGAATTATGAAACAATAACTTTCG,Promoter (<=1kb),5,57717967,58133230,415264,1,Pcdh7-203,873,Pcdh7-203;Pcdh7-201;Pcdh7-202;Pcdh7-205;Pcdh7-206;Pcdh7-207;Pcdh7-204,Pcdh7;Pcdh7;Pcdh7;Pcdh7;Pcdh7;Pcdh7;Pcdh7,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,13,54216,ENSMUSG00000029108,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
21955,cg22232807,0.00000329,0.00000574,0.573510593,0.566714845,gain,ns,-0.0000183,0.00000975,-1.878288397,0.061280147,neg,ns,-0.0032662,0.00285736,-1.14308286,0.253886189,neg,ns,0.595360923,-0.00003,0.0000983,-0.305627468,0.76009343,neg,ns,0.819397956,Ntng1,Ntng1_Exon,3,109827588,109827637,109827636,109827637,50,+,TGCTGCAGCAGGCAGAGGGCAGCTCCCAGAGTTACTTACGTTGACAGCCG,"Exon (Ntng1-202/Ntng1, exon 6 of 7)",3,109780040,110143004,362965,2,Ntng1-211,315367,Ntng1-211;Ntng1-208;Ntng1-206;Ntng1-202;Ntng1-203;Ntng1-204;Ntng1-205;Ntng1-207;Ntng1-209;Ntng1-210;Ntng1-213;Ntng1-212,Ntng1;Ntng1;Ntng1;Ntng1;Ntng1;Ntng1;Ntng1;Ntng1;Ntng1;Ntng1;Ntng1;Ntng1,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,7,80883,ENSMUSG00000059857,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10048,cg21022078,0.00000241,0.00000177,1.3598869,0.174853898,gain,ns,0.00000565,0.00000301,1.878195703,0.061292867,pos,ns,0.000578558,0.000881971,0.655983533,0.512321292,pos,ns,0.290457595,-0.0000164,0.0000303,-0.540467561,0.589262715,neg,ns,0.030273538,Maml3,Maml3_Exon,3,52104083,52104132,52104131,52104132,50,-,TACTGTTGATGCAAATACTACTGCCATTCGCGGCAGCAGCGGGGGCTGCG,Promoter (<=1kb),3,51685907,52105076,419170,2,Maml3-202,944,Maml3-202,Maml3,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,32,433586,ENSMUSG00000061143,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
17478,cg16057023,-0.0000148,0.00000398,-3.713731188,0.000242132,loss,ns,0.0000127,0.00000675,1.877992609,0.061320742,pos,ns,0.000251074,0.001978513,0.126900397,0.899101503,pos,ns,0.046191276,0.0000254,0.000068,0.373471571,0.709052769,pos,ns,0.070075296,Crebzf,Crebzf_threeUTR,7,90444067,90444116,90444115,90444116,50,+,GGCGTCGTCTTCTCTTAAAATGTAGGGTCAAGTAATCTGCTCTTTATCCG,3' UTR,7,90442729,90446104,3376,1,Crebzf-201,1338,Crebzf-201;Crebzf-203;Crebzf-204;Crebzf-205;Crebzf-202;Crebzf-208;Crebzf-207;Crebzf-209;Crebzf-206,Crebzf;Crebzf;Crebzf;Crebzf;Crebzf;Crebzf;Crebzf;Crebzf;Crebzf,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,9,233490,ENSMUSG00000051451,conserved gene and region,7,90443049,90444118,1070,*,1070,137,0.710280374,1.028961703,0.128037383,4.26E-120,CpGisland,TRUE,U1,Pr-A
13339,cg19821873,-0.0000644,0.00000852,-7.561245068,4.56E-13,loss,yes,0.0000272,0.0000145,1.87777128,0.061351133,pos,ns,-0.012054456,0.004240035,-2.843008714,0.004765645,neg,ns,2.321878314,0.000411849,0.000145814,2.824470444,0.005042747,pos,ns,0.883922179,0610010K14Rik,0610010K14Rik_Exon,11,70234745,70234794,70234793,70234794,50,-,GTTTGTACGGCACTGTGGCCACGTCCAAACCACACTGTGGTGTTAGAGCG,"Exon (Mir497-201/Mir497-201, exon 1 of 1)",11,70235206,70236196,991,2,0610010K14Rik-211,1451,0610010K14Rik-211;0610010K14Rik-210;0610010K14Rik-205;0610010K14Rik-209;0610010K14Rik-202;0610010K14Rik-204;0610010K14Rik-208;0610010K14Rik-207;0610010K14Rik-203;0610010K14Rik-213;0610010K14Rik-212;0610010K14Rik-206;0610010K14Rik-201;0610010K14Rik-214;Bcl6b-202;Gm21988-201;Gm21988-202;Rnasek-202;Rnasek-201;Rnasek-203,0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;Bcl6b;Gm21988;Gm21988;Rnasek;Rnasek;Rnasek,1402;0;0;0;0;0;0;0;0;0;0;0;0;0;-4947;0;0;4986;5048;4264,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,9,104457,ENSMUSG00000020831,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2395,cg21388654,0.0000195,0.00000333,5.862561933,1.17E-08,gain,yes,-0.0000106,0.00000565,-1.877754851,0.061353389,neg,ns,-0.000200193,0.001655005,-0.120962272,0.903799283,neg,ns,0.043928007,0.0000192,0.0000569,0.337190309,0.736201623,pos,ns,0.103356919,Tfap2b,Tfap2b_Exon,1,19234272,19234321,19234320,19234321,50,+,CACCACTAACAGGCACACGTCTGGGGAAGGCCCAGGTAGTAAAACTGGCG,"Exon (Tfap2b-201/Tfap2b, exon 7 of 7)",1,19208914,19238576,29663,1,Tfap2b-201,25358,Tfap2b-201;Tfap2b-204;Tfap2b-202,Tfap2b;Tfap2b;Tfap2b,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,40,21419,ENSMUSG00000025927,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
25313,cg06369733,-0.0000159,0.00000318,-5.006850682,0.00000093,loss,yes,0.0000101,0.00000541,1.877739739,0.061355465,pos,ns,0.001116173,0.00158355,0.704855019,0.481429687,pos,ns,0.317467133,0.0000345,0.0000545,0.633054601,0.527164702,pos,ns,0.907874286,Eln,Eln_Intron,5,134772669,134772718,134772669,134772670,50,+,CGGCCACACGCCCCTGTGATGTGGTCACGTTGGAAAAATGTTAATCAAAT,"Intron (Gm30003-201/Gm30003-201, intron 1 of 4)",5,134702593,134747323,44731,2,Eln-201,-25346,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,13717,ENSMUSG00000029675,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16313,cg25056770,0.0000048,0.00000226,2.125121415,0.034367162,gain,ns,-0.00000721,0.00000384,-1.877676506,0.06136415,neg,ns,-0.001229102,0.001124896,-1.092636311,0.275401894,neg,ns,0.560033077,-0.0000462,0.0000387,-1.193344831,0.233646823,neg,ns,0.054511093,Ypel4,Ypel4_fiveUTR,2,84734058,84734107,84734106,84734107,50,+,AGTGTTATGATGCAGTTCCACAACACACAGCCACATTCACCCACAGACCG,Promoter (<=1kb),2,84734058,84738655,4598,1,Ypel4-201,0,Ypel4-201;Ypel4-205;Ypel4-202;Ypel4-203;Ypel4-204,Ypel4;Ypel4;Ypel4;Ypel4;Ypel4,0;0;0;-16;-120,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,1,241525,ENSMUSG00000034059,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
26705,cg03653554,0.00000441,0.00000986,0.446698554,0.655404622,gain,ns,0.0000315,0.0000168,1.877670236,0.061365011,pos,ns,-0.001209701,0.004909196,-0.24641538,0.805523788,neg,ns,0.09392163,0.000149735,0.000168827,0.886912646,0.375813473,pos,ns,0.927781903,Camta1,Camta1_Intron,4,151549247,151549296,151549295,151549296,50,-,TCTGATGTACTTGAAAACCATTTTCAAGCGACATAAAGTTTAACATACCG,"Intron (Camta1-211/Camta1, intron 4 of 24)",4,150917322,151861669,944348,2,Camta1-211,312373,Camta1-211;Camta1-202;Camta1-201;Camta1-210,Camta1;Camta1;Camta1;Camta1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,22,100072,ENSMUSG00000014592,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9530,cg03974928,-0.00000887,0.00000388,-2.285141932,0.022979595,loss,ns,-0.0000124,0.00000659,-1.877612947,0.061372881,neg,ns,0.000909759,0.00193145,0.471023741,0.637955061,pos,ns,0.195209913,-0.0000827,0.0000664,-1.2450749,0.214044571,neg,ns,0.93335768,Naa30,Naa30_threeUTR,14,49187616,49187665,49187616,49187617,50,+,CGAGATAAGAGGCTGTTCAGATACTATTTAAATGGAGTTGATGCACTGCG,3' UTR,14,49172226,49190885,18660,1,Naa30-205,15390,Naa30-205;Naa30-201;Naa30-203;Naa30-204;Naa30-202,Naa30;Naa30;Naa30;Naa30;Naa30,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,7,70646,ENSMUSG00000036282,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15359,cg25092086,-0.00000887,0.00000555,-1.598559142,0.110937301,loss,ns,0.0000177,0.00000943,1.877341629,0.061410164,pos,ns,0.005608157,0.002761303,2.030982545,0.043109795,pos,ns,1.365424046,-0.00018615,0.000095,-1.960275066,0.050859065,neg,ns,0.892979436,Gm49578,Gm49578_Intergenic_upstream,16,80507696,80507745,80507696,80507697,50,-,CGGAAGATACTTTTAAACATTTGCTAAAATTACTTTACAAGCAGGCATGT,Distal Intergenic,16,80710944,80711491,548,1,Gm49578-201,-203248,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16088,cg15552122,0.0000912,0.0000135,6.747575614,7.39E-11,gain,yes,-0.0000431,0.000023,-1.877263897,0.061420848,neg,ns,0.021126706,0.006724667,3.14167309,0.001842056,pos,ns,2.734697061,-0.000831245,0.000231261,-3.594405917,0.000378095,neg,ns,0.353514978,Acaca,Acaca_Intron,11,84376278,84376327,84376326,84376327,50,+,TAAACAATTATGCCATCCCTCAGTGCACACAAACACACAGCCAGGAGCCG,"Intron (Acaca-202/Acaca, intron 50 of 55)",11,84173122,84401651,228530,1,Acaca-202,203156,Acaca-202;Acaca-201,Acaca;Acaca,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,28,28,107476,ENSMUSG00000020532,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16020,cg02737031,-0.00000312,0.00000826,-0.378247072,0.705505942,loss,ns,0.0000263,0.000014,1.877163516,0.061434649,pos,ns,0.004367133,0.004108824,1.062866904,0.288669572,pos,ns,0.539598992,-0.000261371,0.000141302,-1.849733181,0.065303629,neg,ns,0.329538654,Dmd,Dmd_Intron,X,84225999,84226048,84225999,84226000,50,-,CGAGCTGACTTGCAGGCATGAGAGATCATCAAGAAAGATAAAGAAATAGG,"Intron (Dmd-203/Dmd, intron 44 of 78)",20,82948903,85206141,2257239,1,Dmd-203,1277096,Dmd-203;Dmd-215;Dmd-208,Dmd;Dmd;Dmd,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,28,13405,ENSMUSG00000045103,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1455,cg18340611,0.0000484,0.0000104,4.653977322,0.00000483,gain,ns,0.0000332,0.0000177,1.876475915,0.06152925,pos,ns,0.020160554,0.005175639,3.895278039,0.000120186,pos,ns,3.920146998,-0.000502777,0.00017799,-2.824752528,0.005038423,neg,ns,0.24920099,Cdh6,Cdh6_Exon,15,13034592,13034641,13034592,13034593,50,+,CGTTGTAACTGACAATGTTATCTCTGATGTCCTCTTTGGAAATGATCAAA,"Exon (Cdh6-201/Cdh6, exon 12 of 12)",15,13028701,13173675,144975,2,Cdh6-201,139034,Cdh6-201,Cdh6,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,5,12563,ENSMUSG00000039385,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6218,cg21682283,-0.00000369,0.00000367,-1.003525657,0.316389968,loss,ns,0.0000117,0.00000624,1.876247718,0.061560672,pos,ns,0.004655801,0.001828057,2.546857758,0.011352886,pos,ns,1.944893723,-0.000141674,0.0000629,-2.253556333,0.024922562,neg,ns,0.952052362,Tenm2,Tenm2_Intron,11,36383673,36383722,36383721,36383722,50,-,CCGATTTCATTTTAAGCCTGATTTTGAGCAATTACAGTGTCATTGTTCCG,"Intron (Tenm2-202/Tenm2, intron 5 of 30)",11,36006656,37235882,1229227,2,Tenm2-202,852160,Tenm2-202;Tenm2-208;Tenm2-201;Tenm2-204;Tenm2-205;Tenm2-206;Tenm2-203,Tenm2;Tenm2;Tenm2;Tenm2;Tenm2;Tenm2;Tenm2,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,47,84,23964,ENSMUSG00000049336,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16734,cg20987616,-4.84E-08,0.00000667,-0.007254062,0.994216812,loss,ns,0.0000212,0.0000113,1.876142584,0.061575153,pos,ns,-0.002242675,0.003318222,-0.675866457,0.499629316,neg,ns,0.301352087,0.000158758,0.000114113,1.391231348,0.165152911,pos,ns,0.841495877,Gm48101,Gm48101_Intergenic_upstream,12,86331266,86331315,86331314,86331315,50,+,CTATCTCTGAGATTATCTTCCTGATTGAAAACTACTCATCCGTGTAATCG,Distal Intergenic,12,86347977,86348097,121,1,Gm48101-201,-16662,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,4,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26314,cg05472074,0.0000148,0.0000058,2.55944081,0.010958375,gain,ns,-0.0000185,0.00000985,-1.876047287,0.061588282,neg,ns,-0.006909752,0.002884697,-2.395312934,0.017199252,neg,ns,1.764490432,0.000299071,0.0000992,3.01469215,0.002784904,pos,ns,0.84323514,Gm14111,Gm14111_Intergenic_downstream,2,146643830,146643879,146643878,146643879,50,-,CAACTAATCAACTGAACATGGCAACACATTTGAAAAACCCATTATAGGCG,Distal Intergenic,2,146754707,146755705,999,2,Gm14111-201,111875,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,15,17,668918,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1113,cg20299730,0.000144206,0.0000153,9.438509507,9.39E-19,gain,yes,0.0000487,0.000026,1.875570236,0.061654039,pos,ns,0.035122194,0.007604273,4.618744315,0.00000567,pos,ns,5.246702601,-0.000419766,0.00026151,-1.605161143,0.109476538,neg,ns,0.548747529,Gm14515,Gm14515_Intergenic_downstream,X,11632119,11632168,11632167,11632168,50,+,GCTTCTGGAGAGATGTGAATTGGCATTGATTTAATCCTCTTCCCAGCACG,Distal Intergenic,20,11601354,11601569,216,1,Gm14515-201,30765,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,28,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
309,cg10677704,0.000000928,0.00000124,0.746132392,0.456152869,gain,ns,-0.00000396,0.00000211,-1.875522079,0.06166068,neg,ns,0.0000691,0.000619083,0.111550448,0.911252054,pos,ns,0.04036148,-0.0000379,0.0000213,-1.779027016,0.076215127,neg,ns,0.972600192,Ewsr1,Ewsr1_Exon,11,5080657,5080706,5080705,5080706,50,+,TTGAAGTGTATACAAGGCTCTCACTTTGTAACCTGTAGCATATAAATGCG,"Exon (Ewsr1-204/Ewsr1, exon 9 of 9)",11,5069689,5099266,29578,2,Ewsr1-203,18560,Ewsr1-203;Ewsr1-202;Ewsr1-205;Ewsr1-209;Ewsr1-212;Ewsr1-208;Ewsr1-211;Ewsr1-204;Ewsr1-210,Ewsr1;Ewsr1;Ewsr1;Ewsr1;Ewsr1;Ewsr1;Ewsr1;Ewsr1;Ewsr1,0;0;0;0;-2136;0;0;0;5330,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,8,14030,ENSMUSG00000009079,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15717,cg08156047,0.0000181,0.0000072,2.508456549,0.012636348,gain,ns,-0.000023,0.0000122,-1.875399303,0.061677614,neg,ns,-0.001569519,0.00358516,-0.437782065,0.661849135,neg,ns,0.179240994,-0.00019507,0.000123293,-1.582163595,0.114631902,neg,ns,0.740304605,Gm48156,Gm48156_Intergenic_downstream,13,82971744,82971793,82971792,82971793,50,+,ACATAGTGTGCAGTAAATCCAGCTCAAAATAAACAACACAGATGGAATCG,Distal Intergenic,13,83189565,83189709,145,2,Gm48156-201,217916,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,16,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5662,cg11302671,0.00008,0.0000222,3.604195717,0.000364681,gain,ns,-0.0000708,0.0000377,-1.875324608,0.061687919,neg,ns,0.025287,0.011052748,2.28784732,0.022819493,pos,ns,1.64169401,-0.000530349,0.000380103,-1.395277216,0.163930989,neg,ns,0.322113256,Mapkap1,Mapkap1_Intron,2,34527149,34527198,34527197,34527198,50,+,AGAGCTCAAATACATCTGTGTCTTATTTTCTTTTCTGGCACAATCAGTCG,"Intron (Mapkap1-204/Mapkap1, intron 5 of 10)",2,34406862,34623475,216614,1,Mapkap1-204,120287,Mapkap1-204;Mapkap1-202;Mapkap1-201;Mapkap1-209;Mapkap1-203;Mapkap1-207,Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,59,227743,ENSMUSG00000038696,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
18060,cg25257390,-0.00000409,0.00000261,-1.567366195,0.118049283,loss,ns,0.00000831,0.00000443,1.8752377,0.06169991,pos,ns,0.002801056,0.001298673,2.156860632,0.031785012,pos,ns,1.497777618,-0.000121378,0.0000447,-2.71774572,0.006942513,neg,ns,0.946801167,Pola1,Pola1_Intron,X,93429582,93429631,93429582,93429583,50,-,CGCATGGTGAACATAATTGCAATAATTTGCAAAACACCATGGCAACCCAC,"Intron (Pola1-201/Pola1, intron 34 of 36)",20,93304767,93632155,327389,2,Pola1-201,202524,Pola1-201,Pola1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,59,62,18968,ENSMUSG00000006678,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19265,cg17381581,-0.00000511,0.00000116,-4.407978769,0.0000144,loss,ns,0.00000369,0.00000197,1.875219407,0.061702434,pos,ns,0.001015175,0.000576736,1.760206342,0.079358976,pos,ns,1.100403942,-0.000034,0.0000198,-1.715179994,0.087311503,neg,ns,0.048019405,Kmt2d,Kmt2d_fiveUTR,15,98871021,98871070,98871069,98871070,50,-,CAGGGCGATCCAGAAATCCTCATCCGAGAACATGGCCAGAGCCCGGGCCG,Promoter (<=1kb),15,98831669,98871183,39515,2,Kmt2d-202,113,Kmt2d-202;Kmt2d-201,Kmt2d;Kmt2d,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,16,381022,ENSMUSG00000048154,conserved gene and region,15,98870996,98871176,181,*,181,14,0.657458564,0.734492754,0.077348066,1.85E-09,CpGisland,TRUE,U1,Pr-A
23743,cg09624614,-0.00000824,0.00000672,-1.226807436,0.220825905,loss,ns,0.0000214,0.0000114,1.875202196,0.061704809,pos,ns,-0.003592614,0.003342164,-1.074936391,0.283239138,neg,ns,0.547846736,0.000111971,0.000114937,0.974200044,0.330716782,pos,ns,0.541534727,Foxo6,Foxo6_Intergenic_downstream,4,120262427,120262476,120262427,120262428,50,+,CGTGAGAGGAACAGTGTGTGTGAAATTAGCAGTCACCTGAGGACCTCGAT,Distal Intergenic,4,120267079,120287349,20271,2,Foxo6-201,24873,Foxo6-201,Foxo6,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,42,329934,ENSMUSG00000052135,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5161,cg02499843,0.00000163,0.00000309,0.527137371,0.598475219,gain,ns,0.00000985,0.00000525,1.875173844,0.061708722,pos,ns,0.001626278,0.001538488,1.057062242,0.291306219,pos,ns,0.535650244,-0.0000229,0.0000529,-0.433349295,0.66506241,neg,ns,0.107741841,Plxna4,Plxna4_fiveUTR,6,32587410,32587459,32587410,32587411,50,+,CGTGTGGCTGCCTCCTCCAGCCCCAGCCCCGAACGCAAATACTCCACCGA,Promoter (<=1kb),6,32144268,32588192,443925,2,Plxna4-201,733,Plxna4-201,Plxna4,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,9,243743,ENSMUSG00000029765,conserved gene and region,6,32587009,32587555,547,*,547,45,0.647166362,0.791377315,0.08226691,1.82E-30,CpGisland,TRUE,U3,Pr-B
14907,cg24321906,-0.00000164,0.000000511,-3.216349324,0.00143545,loss,ns,-0.00000163,0.000000868,-1.875022852,0.061729562,neg,ns,-0.000680562,0.0002542,-2.677264965,0.007817819,neg,ns,2.106914414,0.0000164,0.00000874,1.87340632,0.061953047,pos,ns,0.991918899,Fam222b,Fam222b_fiveUTR,11,78153803,78153852,78153851,78153852,50,+,CAACAGTGTGAAGGTTCCCCAGCGGAAACACGTTCGTCGTACTGTGAACG,5' UTR,11,78094660,78156700,62041,1,Fam222b-201,59143,Fam222b-201;Fam222b-202;Fam222b-203;Gm12571-201;Traf4-203,Fam222b;Fam222b;Fam222b;Gm12571;Traf4,0;0;0;-4365;11737,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,10,21,216971,ENSMUSG00000037750,conserved gene and region,11,78153825,78153900,76,*,76,9,0.631578947,1.266666667,0.118421053,8.12E-08,CpGisland,TRUE,U10,Tr-S
14560,cg17095212,-0.00000496,0.00000219,-2.267593143,0.024042114,loss,ns,0.00000697,0.00000372,1.874818447,0.061757784,pos,ns,0.002254485,0.001088799,2.070617166,0.039222081,pos,ns,1.406469365,-0.0000453,0.0000374,-1.210374622,0.227057231,neg,ns,0.962145109,Gm50360,Gm50360_Intergenic_downstream,18,76458981,76459030,76458981,76458982,50,-,CGGGAAGTTTGTGCAATAGGAGAGCCATGCCTTAATTGGCAGCCTGACAC,Distal Intergenic,18,76321824,76322259,436,1,Gm50360-201,137206,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,10,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8734,cg10642116,-0.00000938,0.00000358,-2.62377729,0.009126372,loss,ns,-0.0000114,0.00000607,-1.874812964,0.061758541,neg,ns,-0.001460493,0.001779637,-0.820669127,0.412465372,neg,ns,0.384612506,-0.000063,0.0000612,-1.028804136,0.304373761,neg,ns,0.927399525,Tmem63b,Tmem63b_Exon,17,45660798,45660847,45660846,45660847,50,-,AATCTCATTCTCTATGAGGCTGTCCTCGCAAGACTGGAAGTCTGTGTCCG,"Exon (Tmem63b-201/Tmem63b, exon 24 of 24)",17,45660171,45686259,26089,2,Tmem63b-201,25412,Capn11-201;Capn11-202;Tmem63b-201;Tmem63b-208;Tmem63b-203,Capn11;Capn11;Tmem63b;Tmem63b;Tmem63b,-1473;-1501;0;0;5607,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,12,224807,ENSMUSG00000036026,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7486,cg05603896,-0.0000857,0.0000128,-6.719188034,8.76E-11,loss,yes,0.0000406,0.0000217,1.874765064,0.061765156,pos,ns,-0.009521932,0.006350544,-1.499388321,0.134790593,neg,ns,0.870340415,0.000311623,0.000218395,1.42687921,0.154621117,pos,ns,0.892171188,Scml4,Scml4_fiveUTR,10,42860550,42860599,42860598,42860599,50,+,GCCAGTGGTTGGCTGGTTTTCCGGACATGATGTGGTTGAAGCTGTCATCG,Promoter (<=1kb),10,42860370,42960780,100411,1,Scml4-201,180,Scml4-201;Scml4-209;Scml4-203;Scml4-202;Scml4-207,Scml4;Scml4;Scml4;Scml4;Scml4,0;0;0;-194;-4915,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,4,268297,ENSMUSG00000044770,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4155,cg17167646,-0.00000439,0.00000692,-0.634195079,0.526421218,loss,ns,0.000022,0.0000118,1.87468387,0.061776371,pos,ns,0.000780239,0.003445728,0.226436681,0.821011034,pos,ns,0.085651006,0.0000968,0.000118498,0.816516504,0.41483179,pos,ns,0.081141923,Zfp703,Zfp703_Intergenic_downstream,8,26984799,26984848,26984847,26984848,50,+,TGTTTAGTCTAACTGGCAGCTTCTATTTTCCTATTGATTTATTGCAGCCG,Distal Intergenic,8,26978185,26978692,508,1,Zfp703-203,6614,Zfp703-202,Zfp703,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,11,353310,ENSMUSG00000085795,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
12116,cg02930311,-0.0000141,0.00000534,-2.637187105,0.00878105,loss,ns,0.000017,0.00000908,1.87458151,0.061790511,pos,ns,0.005860718,0.002659018,2.204091286,0.028252585,pos,ns,1.54894181,-0.000133443,0.0000914,-1.459299103,0.14549534,neg,ns,0.900489215,Piezo2,Piezo2_threeUTR,18,63010448,63010497,63010496,63010497,50,-,CCAAGCTCAATATACATATTTCTTTCATAATTATGAACTTAAAAAACCCG,3' UTR,18,63010213,63387183,376971,2,Piezo2-202,376686,Piezo2-202;Piezo2-205;Piezo2-215;Piezo2-209;Piezo2-214,Piezo2;Piezo2;Piezo2;Piezo2;Piezo2,0;0;375772;375960;375772,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,667742,ENSMUSG00000041482,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13677,cg01239827,0.0000468,0.0000101,4.643655988,0.00000506,gain,ns,0.0000321,0.0000171,1.874525257,0.061798283,pos,ns,0.008923713,0.005012025,1.780460529,0.075979913,pos,ns,1.119301206,-0.000129867,0.000172363,-0.753452427,0.451749937,neg,ns,0.191049974,Gm49667,Gm49667_Intergenic_downstream,16,72027598,72027647,72027598,72027599,50,+,CGCAGCCACCAATAGAAGCGCACACTTGGACCTATTTGTATGCAATGCCT,Distal Intergenic,16,71879044,71879229,186,1,Gm49667-201,148554,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
26966,cg16679083,0.000114426,0.0000241,4.750714675,0.00000311,gain,ns,0.0000767,0.0000409,1.874524745,0.061798354,pos,ns,0.045007089,0.011987913,3.754372422,0.000207477,pos,ns,3.683029661,-0.000694383,0.000412263,-1.684319122,0.093126518,neg,ns,0.299053083,Ptchd1,Ptchd1_Exon,X,155623170,155623219,155623218,155623219,50,-,CTGGTAGCGGCTGAAGCTGGCGCCGAGCAGGATGGAGATGAGCACCGGCG,Promoter (<=1kb),20,155573455,155623325,49871,2,Ptchd1-201,106,Gm15155-202;Gm15155-201;Ptchd1-201;Ptchd1-203;Ptchd1-202,Gm15155;Gm15155;Ptchd1;Ptchd1;Ptchd1,-1522;-1556;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,11,211612,ENSMUSG00000041552,conserved gene and region,X,155623027,155623834,808,*,808,97,0.735148515,0.890798327,0.120049505,4.32E-82,CpGisland,TRUE,U3,Pr-B
1403,cg01243922,-0.0000287,0.0000134,-2.135207591,0.033527737,loss,ns,0.0000428,0.0000228,1.874319048,0.06182678,pos,ns,0.009444987,0.006690278,1.411748032,0.1590271,pos,ns,0.79852886,-0.000372716,0.000230078,-1.619955765,0.106258557,neg,ns,0.687266672,Med14,Med14_Exon,X,12689405,12689454,12689405,12689406,50,+,CGCTGGTGATGGGGCTCTCAAAGCCCCACTGGGGGAGCTGGCAGCATGCA,"Exon (Med14-202/Med14, exon 24 of 31)",20,12675369,12762073,86705,2,Med14-202,72619,Med14-202;Med14-203;Med14-204,Med14;Med14;Med14,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,7,26896,ENSMUSG00000064127,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12177,cg23292290,-0.00000702,0.00000733,-0.957026532,0.339299608,loss,ns,0.0000233,0.0000125,1.874121959,0.061854027,pos,ns,0.012397575,0.003649239,3.397303889,0.000769332,pos,ns,3.113886352,-0.000396409,0.000125497,-3.158712922,0.00174087,neg,ns,0.875301724,Map2k5,Map2k5_Intron,9,63217698,63217747,63217746,63217747,50,+,TGCAATCATTGCTAATGTTACGAAGCTCACTCTTTTTAAATTAAAAACCG,"Intron (Map2k5-201/Map2k5, intron 17 of 21)",9,63163768,63377902,214135,2,Map2k5-201,160155,Map2k5-201;Map2k5-202,Map2k5;Map2k5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,34,37,23938,ENSMUSG00000058444,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4816,cg16367356,-0.0000218,0.0000124,-1.761945644,0.079064065,loss,ns,0.0000395,0.0000211,1.874035065,0.061866044,pos,ns,0.018933394,0.006171641,3.0678052,0.002346625,pos,ns,2.629556268,-0.000671486,0.000212242,-3.163769449,0.001711846,neg,ns,0.801785226,Psme4,Psme4_Exon,11,30791162,30791211,30791210,30791211,50,-,CTGGTATCAATTCCAAAACTGGAAATCAGCATGATGCAGGGATTTGCCCG,"Exon (Psme4-201/Psme4, exon 2 of 47)",11,30771726,30880361,108636,1,Psme4-201,19436,Psme4-201;Psme4-206,Psme4;Psme4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,103554,ENSMUSG00000040850,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7488,cg13103551,-0.000000894,0.00000134,-0.66735897,0.505039333,loss,ns,0.00000426,0.00000228,1.873856137,0.061890793,pos,ns,0.001584784,0.000666742,2.376909436,0.018065115,pos,ns,1.743159273,-0.0000533,0.0000229,-2.324103807,0.020766021,neg,ns,0.962348185,Mrps9,Mrps9_Intron,1,42873458,42873507,42873506,42873507,50,-,AATAAATTAGCACCTGTACATTAGTCTCACTTGCTGGTAATTTATAAGCG,"Intron (Mrps9-201/Mrps9, intron 2 of 10)",1,42851233,42905682,54450,1,Mrps9-201,22225,Mrps9-201;Mrps9-202;Mrps9-203;Mrps9-205;Mrps9-204,Mrps9;Mrps9;Mrps9;Mrps9;Mrps9,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,12,69527,ENSMUSG00000060679,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14888,cg17264895,-0.00000357,0.00000187,-1.905670288,0.057617871,loss,ns,0.00000596,0.00000318,1.873776846,0.061901763,pos,ns,0.002974409,0.000932133,3.19097114,0.001563242,pos,ns,2.805973914,-0.0000772,0.0000321,-2.409726034,0.01654689,neg,ns,0.963172375,Pax3,Pax3_Intergenic_downstream,1,78082971,78083020,78083019,78083020,50,+,GTTTCCTTTTGGCCCAAGAAAAATGCCAATTATGGTAGCTAAACTGCCCG,Distal Intergenic,1,78101267,78196838,95572,2,Pax3-201,113818,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,17,18505,ENSMUSG00000004872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9869,cg21589872,0.0000888,0.0000123,7.22276633,3.97E-12,gain,yes,-0.0000391,0.0000209,-1.873628529,0.061922287,neg,ns,0.029117618,0.006117793,4.759497126,0.00000298,pos,ns,5.525549217,-0.000874534,0.00021039,-4.156722616,0.0000418,neg,ns,0.323179028,Clk4,Clk4_Exon,11,51273087,51273136,51273087,51273088,50,-,CGAAGGAAAAGAACCAGGAGTGTAGAGGATGATGAGGAGGGTCACCTGAT,"Exon (Clk4-205/Clk4, exon 5 of 6)",11,51261730,51273626,11897,1,Clk4-205,11357,Clk4-214;Clk4-205;Clk4-201;Clk4-204;Clk4-207;Clk4-212;Clk4-210;Clk4-203;Clk4-213;Clk4-202;Clk4-208;Clk4-211,Clk4;Clk4;Clk4;Clk4;Clk4;Clk4;Clk4;Clk4;Clk4;Clk4;Clk4;Clk4,11357;0;0;0;9923;0;9913;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,7,12750,ENSMUSG00000020385,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
590,cg13387883,0.0000758,0.0000174,4.362369774,0.0000175,gain,ns,-0.0000553,0.0000295,-1.873548453,0.06193337,neg,ns,0.00268029,0.008645446,0.310023323,0.756751529,pos,ns,0.121046693,-0.0000605,0.000297316,-0.203444757,0.838920898,neg,ns,0.609884198,Rbfox1,Rbfox1_Intron,16,7141283,7141332,7141283,7141284,50,+,CGTTCAGTAACAGTTCACTGGAGCAGAAAGAGCCCTGTGAATTGATATTA,"Intron (Rbfox1-205/Rbfox1, intron 4 of 11)",16,5885355,7353045,1467691,1,Rbfox1-205,1255928,Rbfox1-205;Rbfox1-201;Rbfox1-202;Rbfox1-203,Rbfox1;Rbfox1;Rbfox1;Rbfox1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,35,268859,ENSMUSG00000008658,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1197,cg09332686,-0.00000537,0.00000153,-3.511966907,0.000510904,loss,ns,0.00000487,0.0000026,1.873431308,0.061949587,pos,ns,0.000605068,0.000760795,0.79531063,0.427041345,pos,ns,0.369530076,-0.0000457,0.0000262,-1.745430146,0.081900806,neg,ns,0.966021307,Ptprg,Ptprg_Intron,14,12037501,12037550,12037501,12037502,50,+,CGAATTGTTCCATGTTTAATGAATGCATCTGTTTTCTAGTTCACACCTGT,"Intron (Ptprg-201/Ptprg, intron 5 of 29)",14,11553532,12242041,688510,1,Ptprg-201,483969,Ptprg-201;Ptprg-204,Ptprg;Ptprg,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,23,19270,ENSMUSG00000021745,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21767,cg25773519,0.0000911,0.00000859,10.60839319,1.23E-22,gain,yes,-0.0000273,0.0000146,-1.873396591,0.061954394,neg,ns,0.008449652,0.004275362,1.976359284,0.049000268,pos,ns,1.309801549,-0.000153764,0.000147029,-1.045806852,0.296464977,neg,ns,0.139165092,Syt1,Syt1_fiveUTR,10,109010934,109010983,109010982,109010983,50,-,ATCCCCACACTGCAGCTTCTCCAGGAATCCCTCCAGTGAGGAGGCGGCCG,Promoter (<=1kb),10,108497650,109010975,513326,2,Syt1-202,0,Syt1-202;Syt1-201;Syt1-206;Syt1-204;Syt1-203,Syt1;Syt1;Syt1;Syt1;Syt1,0;0;-1823;0;-1834,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,5,20979,ENSMUSG00000035864,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
20736,cg24620755,-0.00000618,0.00000303,-2.041731415,0.0420244,loss,ns,0.00000963,0.00000514,1.873187514,0.061983348,pos,ns,0.004209858,0.001506208,2.795004252,0.005513427,pos,ns,2.258578333,-0.000151009,0.0000518,-2.915331388,0.003812029,neg,ns,0.946512141,Dab1,Dab1_threeUTR,4,104744615,104744664,104744615,104744616,50,-,CGTTCTGACACATATTTTTTTAATAAAGATGAGAAAGAGAAAATGACTGT,3' UTR,4,104367590,104744844,377255,1,Dab1-203,377025,Dab1-207;Dab1-203,Dab1;Dab1,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,13,13131,ENSMUSG00000028519,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5010,cg04494540,0.0000151,0.00000279,5.410453959,0.000000126,gain,yes,-0.00000887,0.00000474,-1.873059656,0.062001061,neg,ns,0.000636741,0.00138804,0.458733764,0.646746817,pos,ns,0.1892657,-0.000106734,0.0000477,-2.235991895,0.026063693,neg,ns,0.067315114,Foxc1,Foxc1_fiveUTR,13,31806623,31806672,31806671,31806672,50,+,GGTGACGGATGCTCAAAAGTTCAGAAGTTTTCCCAATGCTTCCTTAAGCG,Promoter (<=1kb),13,31806633,31812476,5844,1,Foxc1-201,0,Foxc1-201,Foxc1,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,7,17300,ENSMUSG00000050295,conserved gene and region,13,31806671,31806816,146,*,146,16,0.726027397,0.842408943,0.109589041,3.50E-13,CpGisland,TRUE,U3,Pr-B
20182,cg20125611,0.00000806,0.00000264,3.05590778,0.002438887,gain,ns,-0.00000839,0.00000448,-1.872854143,0.062029539,neg,ns,0.007330464,0.001312822,5.583745073,5.15E-08,pos,ns,7.288448403,-0.000151588,0.0000451,-3.357600555,0.000884226,neg,ns,0.936118919,Ryk,Ryk_threeUTR,9,102906090,102906139,102906090,102906091,50,+,CGTGGACATTGACCCCTTCGAGATGGCCGCATACCTGAAAGATGGTTACC,3' UTR,9,102834917,102907542,72626,1,Ryk-203,71173,Ryk-203;Ryk-201;Ryk-204,Ryk;Ryk;Ryk,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,20187,ENSMUSG00000032547,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12500,cg05874558,-0.0000582,0.00000758,-7.68681703,2.01E-13,loss,yes,-0.0000241,0.0000129,-1.872743852,0.062044827,neg,ns,-0.007566479,0.003770878,-2.006556565,0.045665063,neg,ns,1.340415936,0.0000674,0.00012968,0.52000674,0.603430011,pos,ns,0.874429778,Rab11a,Rab11a_threeUTR,9,64716898,64716947,64716946,64716947,50,-,GGAACATGAATAGGAACCACATTGTTGCTTGGAGACATGTCATTTTCGCG,3' UTR,9,64715299,64737758,22460,2,Rab11a-208,20811,Rab11a-208;Rab11a-204;Rab11a-209;Rab11a-205;Rab11a-203;Rab11a-207;Rab11a-206;Rab11a-201,Rab11a;Rab11a;Rab11a;Rab11a;Rab11a;Rab11a;Rab11a;Rab11a,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,3,53869,ENSMUSG00000004771,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14926,cg08004469,0.0000333,0.0000117,2.842617093,0.004771353,gain,ns,0.0000373,0.0000199,1.87273753,0.062045703,pos,ns,0.012189298,0.005835456,2.088833725,0.037538085,pos,ns,1.425527884,0.0000331,0.000200681,0.164873402,0.869151085,pos,ns,0.395822261,Nr2f1,Nr2f1_Intron,13,78177862,78177911,78177910,78177911,50,+,AGCGCTCCGTTTTGTTTCCCCAGACCCTGAGATTTATTTTCTACTTAGCG,"Intron (3110006O06Rik-201/3110006O06Rik-201, intron 1 of 1)",13,78189872,78190443,572,2,Nr2f1-204,12532,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,55,13865,ENSMUSG00000069171,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
26452,cg19722977,0.0000664,0.00000818,8.112524868,1.17E-14,gain,yes,-0.000026,0.0000139,-1.87261501,0.06206269,neg,ns,0.011554562,0.004072027,2.837545786,0.004845828,pos,ns,2.314632031,-0.000472161,0.000140037,-3.371697785,0.000841715,neg,ns,0.111424828,Foxa2,Foxa2_Promoter,2,148045591,148045640,148045591,148045592,50,-,CGAAGAGGATTTGGAGGCGCCGCAAGTCAATATTTGATCACAAAGTTAAT,Promoter (<=1kb),2,148042877,148045948,3072,2,Foxa2-202,308,Foxa2-202;Foxa2-201;Foxa2-204;Foxa2-203,Foxa2;Foxa2;Foxa2;Foxa2,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,4,25,15376,ENSMUSG00000037025,conserved gene and region,2,148045514,148045612,99,*,99,10,0.656565657,0.955598456,0.101010101,5.67E-08,CpGisland,TRUE,U3,Pr-B
16524,cg15315127,-0.0000023,0.00000797,-0.288822952,0.772909906,loss,ns,0.0000254,0.0000135,1.872567956,0.062069215,pos,ns,-0.000970219,0.003966709,-0.24459035,0.806935451,neg,ns,0.093161204,0.000180158,0.000136415,1.320666571,0.187586696,pos,ns,0.846510623,Camkmt,Camkmt_Intron,17,85375770,85375819,85375818,85375819,50,-,GTATGTGGGTTGTTCAGCTGGGGATTTTAGTCGCAGCTGATCCCCTACCG,"Intron (Camkmt-201/Camkmt, intron 3 of 10)",17,85090552,85458588,368037,1,Camkmt-201,285218,Camkmt-201,Camkmt,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,41,44,73582,ENSMUSG00000071037,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13842,cg08247403,-0.0000566,0.0000111,-5.105377122,0.000000577,loss,yes,0.0000352,0.0000188,1.872474505,0.062082175,pos,ns,-0.005236448,0.005513579,-0.949736713,0.342985872,neg,ns,0.464723768,0.000323104,0.000189612,1.704030736,0.089377399,pos,ns,0.8049648,Lclat1,Lclat1_Intergenic_upstream,17,73081884,73081933,73081932,73081933,50,-,ATGGTGCTGTCTAACATGATGTAACAAGATGTCATCTTCTAGCTCCAACG,Distal Intergenic,17,73107985,73161991,54007,1,Lclat1-202,-26101,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,225010,ENSMUSG00000054469,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19639,cg22036685,-0.0000634,0.0000109,-5.821572032,1.46E-08,loss,yes,0.0000346,0.0000185,1.872247889,0.062113613,pos,ns,-0.00039103,0.005420286,-0.072141972,0.942535446,neg,ns,0.025702308,-0.000276011,0.000186403,-1.48072007,0.139696803,neg,ns,0.734848859,Gm28267,Gm28267_Intergenic_upstream,9,100252389,100252438,100252389,100252390,50,+,CGCTCCAGGAGACGCCTCAGACCACTGCAAATCACCTACTTTATAGAGGC,Distal Intergenic,9,100404495,100404759,265,1,Gm28267-201,-152057,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,29,29,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25641,cg05981844,-0.0000284,0.00000405,-7.017593434,1.43E-11,loss,yes,-0.0000129,0.00000688,-1.872204742,0.0621196,neg,ns,-0.000523528,0.002016804,-0.259582724,0.795357969,neg,ns,0.099437363,-0.0000873,0.0000694,-1.259390534,0.208836709,neg,ns,0.894961792,Tsc22d4,Tsc22d4_Exon,5,137758690,137758739,137758690,137758691,50,-,CGGAAGCCTGGTTGGCATTGACAACAAAATCGAGCAAGCCATGGTAAGAG,"Exon (Tsc22d4-203/Tsc22d4, exon 4 of 6)",5,137745730,137768450,22721,1,Tsc22d4-203,12960,Tsc22d4-203;Tsc22d4-202;Tsc22d4-207;Tsc22d4-209;Tsc22d4-205;Tsc22d4-204;Tsc22d4-201,Tsc22d4;Tsc22d4;Tsc22d4;Tsc22d4;Tsc22d4;Tsc22d4;Tsc22d4,0;0;0;0;0;-2960;-2971,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,78829,ENSMUSG00000029723,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1541,cg04958293,-0.0000107,0.00000345,-3.108414521,0.002055363,loss,ns,0.000011,0.00000586,1.872094364,0.062134919,pos,ns,-0.004115871,0.001716854,-2.397333402,0.017106457,neg,ns,1.76683993,0.0000667,0.000059,1.130231909,0.259252228,pos,ns,0.919657667,Cask,Cask_threeUTR,X,13522053,13522102,13522101,13522102,50,+,CACTACAACTAGGTAGTCTCTAGGGACCATGACCTGCTGACACAAGGCCG,3' UTR,20,13517080,13786030,268951,2,Cask-212,263928,Cask-212;Cask-203;Cask-204;Cask-201;Cask-202;Cask-207,Cask;Cask;Cask;Cask;Cask;Cask,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,9,12361,ENSMUSG00000031012,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
736,cg01294450,-0.000000302,0.00000241,-0.125074065,0.900545984,loss,ns,-0.00000768,0.0000041,-1.871974303,0.062151584,neg,ns,0.002071249,0.001201215,1.724295557,0.085651358,pos,ns,1.067265745,-0.000102973,0.0000413,-2.492701989,0.013199202,neg,ns,0.0776163,Nipbl,Nipbl_Intron,15,8442468,8442517,8442516,8442517,50,-,CGCTACTGACTACTACACGGATTTATAGCATTAAAAACATGCCTAGTACG,"Intron (Nipbl-201/Nipbl, intron 1 of 46)",15,8290617,8444463,153847,2,Nipbl-201,1946,Nipbl-201,Nipbl,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,36,71175,ENSMUSG00000022141,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8087,cg24010054,-0.0000107,0.00000248,-4.329663344,0.0000202,loss,ns,0.00000789,0.00000421,1.871731909,0.062185243,pos,ns,0.002591185,0.001234251,2.099399393,0.036589984,pos,ns,1.436637782,-0.0000958,0.0000424,-2.255861443,0.024776078,neg,ns,0.078988959,Jarid2,Jarid2_fiveUTR,13,44731358,44731407,44731358,44731359,50,-,CGCTGGAGTTGACTCTTCTGCTCGCACTGCTGCTGCAGCACAAACGTGAC,Promoter (<=1kb),13,44731368,44885028,153661,1,Jarid2-215,0,Jarid2-214;Jarid2-212;Jarid2-204;Jarid2-210;Jarid2-201;Jarid2-209;Jarid2-203;Jarid2-208;Jarid2-213;Jarid2-215;Jarid2-216;Jarid2-206;Jarid2-205;Jarid2-202,Jarid2;Jarid2;Jarid2;Jarid2;Jarid2;Jarid2;Jarid2;Jarid2;Jarid2;Jarid2;Jarid2;Jarid2;Jarid2;Jarid2,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,8,21,16468,ENSMUSG00000038518,conserved gene but different region,13,44731317,44731403,87,*,87,10,0.701149425,0.956043956,0.114942529,1.55E-08,CpGisland,TRUE,U1,Pr-A
10401,cg13013032,-0.00000351,0.00000164,-2.148607334,0.032439844,loss,ns,0.0000052,0.00000278,1.871725744,0.062186099,pos,ns,0.001403463,0.000814018,1.724118655,0.08568333,pos,ns,1.067103662,-0.0000656,0.000028,-2.341635486,0.019832475,neg,ns,0.957082306,Npas3,Npas3_Intron,12,53354775,53354824,53354775,53354776,50,+,CGCATCTTAGGGATTTGAAAGGTGTGTTATGTATAAATTAGCTGTCACTT,"Intron (Npas3-204/Npas3, intron 1 of 10)",12,53248157,54069532,821376,1,Npas3-204,106618,Npas3-204;Npas3-201;Npas3-202;Npas3-203,Npas3;Npas3;Npas3;Npas3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,83,103,27386,ENSMUSG00000021010,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13809,cg24263504,-0.0000373,0.00000971,-3.842456859,0.000147763,loss,ns,-0.0000309,0.0000165,-1.87156256,0.062208767,neg,ns,0.001172423,0.004835209,0.242476105,0.808571613,pos,ns,0.09228151,-0.000215777,0.000166282,-1.297656095,0.1953703,neg,ns,0.905330418,Gm10135,Gm10135_Exon,5,72965782,72965831,72965830,72965831,50,-,ACAGTTCCTTATTTTTCAACAGCTTCGCAAAGGCTGAAAAATTTGCCTCG,"Exon (Slain2-201/Slain2, exon 7 of 9)",5,72965808,72974702,8895,2,Gm10135-201,8871,Gm10135-201;Slain2-202;Slain2-201;Slain2-203,Gm10135;Slain2;Slain2;Slain2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9250,cg14157293,0.00000116,0.00000275,0.419499666,0.675141557,gain,ns,-0.00000876,0.00000468,-1.87149412,0.062218276,neg,ns,-0.000324859,0.001370528,-0.237031995,0.81278853,neg,ns,0.090022434,-0.0000188,0.0000471,-0.397827753,0.691030972,neg,ns,0.948913441,Cadm1,Cadm1_Intron,9,47850020,47850069,47850068,47850069,50,-,TGGTCATAATCACTGCTCTAATGTCTCATTTGCTGAATTATATCGCAGCG,"Intron (Cadm1-204/Cadm1, intron 9 of 9)",9,47530173,47853385,323213,1,Cadm1-204,319847,Cadm1-204;Cadm1-209;Cadm1-206;Cadm1-202;Cadm1-203;Cadm1-201,Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,77,54725,ENSMUSG00000032076,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17733,cg21084286,0.0000385,0.00000627,6.132252852,2.64E-09,gain,yes,-0.0000199,0.0000107,-1.871386557,0.062233223,neg,ns,-0.007752391,0.003122068,-2.483094798,0.013553265,neg,ns,1.867956069,0.000133363,0.000107368,1.242119228,0.215131434,pos,ns,0.843994399,Fto,Fto_Intron,8,91533806,91533855,91533806,91533807,50,-,CGGGGCTTTAGCATTATTATTTTTAATGACTGAACACAAGTCTTTCATTT,"Intron (Fto-201/Fto, intron 8 of 8)",8,91313525,91668439,354915,1,Fto-201,220281,Fto-201;Fto-205,Fto;Fto,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,26,26383,ENSMUSG00000055932,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21565,cg07730306,-0.00000238,0.00000178,-1.334121236,0.183143353,loss,ns,0.00000566,0.00000303,1.87111031,0.062271625,pos,ns,0.001807412,0.000886382,2.03908929,0.042289018,pos,ns,1.373772398,-0.0000386,0.0000305,-1.266837074,0.206164504,neg,ns,0.960750516,Cyp46a1,Cyp46a1_Exon,12,108345571,108345620,108345619,108345620,50,-,TAGAAGTTCCTGATGTCAACCAAGTACAACAAGGACTCCAAGATGTACCG,"Exon (Cyp46a1-201/Cyp46a1, exon 4 of 15)",12,108334381,108362234,27854,1,Cyp46a1-201,11190,Cyp46a1-201;Cyp46a1-202;Cyp46a1-204,Cyp46a1;Cyp46a1;Cyp46a1,0;0;-465,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,13116,ENSMUSG00000021259,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4182,cg05130731,0.00000629,0.0000101,0.620909709,0.535115281,gain,ns,-0.0000322,0.0000172,-1.871071859,0.062276972,neg,ns,-0.008269912,0.005045673,-1.639010769,0.102225446,neg,ns,0.990440986,-0.000169912,0.00017352,-0.979204597,0.328242444,neg,ns,0.737566953,Grm8,Grm8_Exon,6,27285726,27285775,27285774,27285775,50,+,ATGACTTACTGTTGGTTTCAAGACTCTCACAGAGTTCACTTTTCACCTCG,"Exon (Grm8-202/Grm8, exon 10 of 11)",6,27275119,28134545,859427,2,Grm8-202,848770,Grm8-202;Grm8-203;Grm8-201,Grm8;Grm8;Grm8,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,14823,ENSMUSG00000024211,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18839,cg23692250,-0.000117156,0.0000119,-9.833143211,4.88E-20,loss,yes,0.0000379,0.0000202,1.870988211,0.062288605,pos,ns,-0.00835561,0.005929914,-1.409060872,0.159819449,neg,ns,0.79637037,0.000032,0.000203929,0.157004311,0.875343656,pos,ns,0.491181832,E130114P18Rik,E130114P18Rik_Intron,4,97648988,97649037,97648988,97648989,50,-,CGGTGCAGAACATGCTATAGTATTGTAGTCATTTATGTAATGTCATTGAA,"Intron (E130114P18Rik-204/E130114P18Rik, intron 3 of 5)",4,97568133,97778048,209916,2,E130114P18Rik-204,129011,E130114P18Rik-204;E130114P18Rik-209,E130114P18Rik;E130114P18Rik,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,24,319865,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12438,cg08571946,-0.00000705,0.00000216,-3.263340214,0.001224022,loss,ns,0.00000686,0.00000367,1.870810373,0.062313343,pos,ns,0.001773249,0.001074659,1.650058355,0.0999438,pos,ns,1.000244143,-0.0000833,0.000037,-2.254295638,0.024875499,neg,ns,0.947920881,Gm13577,Gm13577_Intergenic_downstream,2,64326784,64326833,64326832,64326833,50,-,CAAGACACATATGATGAACTGAACAAAATGACCTGCTAATAGCTTTTACG,Distal Intergenic,2,64474745,64474949,205,2,Gm13577-201,148165,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,17,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24963,cg13941631,-0.00000439,0.00000251,-1.75001842,0.081104514,loss,ns,0.00000796,0.00000426,1.870802916,0.06231438,pos,ns,-0.000514147,0.001247241,-0.412227635,0.680457497,neg,ns,0.167198996,0.0000202,0.0000429,0.470854135,0.638076046,pos,ns,0.944238451,Nop56,Nop56_Exon,2,130276805,130276854,130276805,130276806,50,+,CGCTCCAAGATGAGCCAAGTAGCCCCCAGCCTGTCAGCCCTAATTGGGGA,"Exon (Nop56-202/Nop56, exon 7 of 12)",2,130274430,130279313,4884,1,Nop56-202,2375,Idh3b-201;Idh3b-204;Idh3b-205;Nop56-202;Nop56-212;Nop56-218;Nop56-204;Nop56-206;Nop56-205;Nop56-215;Nop56-210;Nop56-216;Nop56-219;Nop56-207;Nop56-217;Nop56-209;Nop56-213;Nop56-201;Nop56-211;Nop56-203;Nop56-214;Nop56-208,Idh3b;Idh3b;Idh3b;Nop56;Nop56;Nop56;Nop56;Nop56;Nop56;Nop56;Nop56;Nop56;Nop56;Nop56;Nop56;Nop56;Nop56;Nop56;Nop56;Nop56;Nop56;Nop56,0;0;0;0;0;0;0;2313;1974;1009;0;0;0;0;0;0;-235;-303;-364;-368;-461;-857,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,67134,ENSMUSG00000027405,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12495,cg04513967,-0.0000125,0.0000131,-0.955724167,0.339956299,loss,ns,0.0000416,0.0000222,1.870662204,0.06233396,pos,ns,0.001996576,0.006517695,0.306331628,0.759557796,pos,ns,0.119439175,0.000369482,0.000224143,1.648419053,0.100279762,pos,ns,0.360631373,Grid2,Grid2_Intron,6,64688402,64688451,64688402,64688403,50,-,CGTTACAAATGGGACACAGACTGCCATTGTCCCAGGGACACTTTAATAAC,"Intron (Grid2-207/Grid2, intron 1 of 1)",6,64663188,64704323,41136,1,Grid2-207,25214,Grid2-207,Grid2,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,10,14804,ENSMUSG00000071424,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14497,cg06837339,0.00000187,0.00000254,0.737214161,0.461549722,gain,ns,-0.00000808,0.00000432,-1.870601435,0.062342417,neg,ns,-0.001834168,0.001265423,-1.449450036,0.148222805,neg,ns,0.829084972,0.0000894,0.0000435,2.053366541,0.040875791,pos,ns,0.850106934,Pde11a,Pde11a_Intron,2,76053993,76054042,76053993,76053994,50,-,CGAAAGCGACAAGATGGGTTTTCATTCCCAAGAAATGAGTATAAGAGATT,"Intron (Pde11a-201/Pde11a, intron 13 of 19)",2,75989912,76338774,348863,2,Pde11a-201,284732,Pde11a-201;Pde11a-203,Pde11a;Pde11a,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,4,241489,ENSMUSG00000075270,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13522,cg09394345,-0.000000954,0.00000308,-0.31001297,0.756759395,loss,ns,0.00000978,0.00000523,1.870579503,0.06234547,pos,ns,0.003335827,0.001532246,2.177083163,0.030228472,pos,ns,1.519583808,-0.000121108,0.0000527,-2.298342549,0.022207577,neg,ns,0.932183474,Gm10172,Gm10172_Intergenic_downstream,7,71145669,71145718,71145669,71145670,50,-,CGGTCCATTTAGTCCAAGCCATATTACCTCATATGTTTTCCTGGCTGACC,Distal Intergenic,7,71332363,71332921,559,2,Gm10172-201,187252,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,31,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12759,cg05029203,0.0000144,0.00000374,3.855823628,0.000140267,gain,ns,-0.0000119,0.00000635,-1.870391109,0.062371696,neg,ns,0.002379387,0.001859546,1.27955294,0.201659232,pos,ns,0.69538189,0.000077,0.0000639,1.204526555,0.229304933,pos,ns,0.093527191,Phox2b,Phox2b_Exon,5,67098711,67098760,67098759,67098760,50,+,CGGACTGCTCTGGTGGTCCCTGAGGGTGCCCAGGCTGCAGGATCCCGGCG,Promoter (<=1kb),5,67094399,67099301,4903,2,Phox2b-201,541,Phox2b-201;Phox2b-202,Phox2b;Phox2b,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,28,18935,ENSMUSG00000012520,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
1377,cg19095868,-0.0000598,0.00000816,-7.331669931,1.99E-12,loss,yes,0.0000259,0.0000139,1.87033371,0.062379689,pos,ns,-0.001506856,0.004061101,-0.371046268,0.71085651,neg,ns,0.148218055,0.0000652,0.000139661,0.466879743,0.640913877,pos,ns,0.841910538,Gm11847,Gm11847_Intergenic_downstream,4,12475325,12475374,12475373,12475374,50,+,CAACACAGTTGCACACAAAACAAGGCATAATCCACTGGGTTAAATTAACG,Distal Intergenic,4,12232833,12233951,1119,1,Gm11847-201,242492,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,8,545592,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8903,cg05109207,0.0000227,0.000004,5.678831244,3.12E-08,gain,yes,-0.0000127,0.0000068,-1.870259915,0.062389965,neg,ns,0.003498949,0.001991543,1.756903681,0.079921441,pos,ns,1.097336696,-0.000145797,0.0000685,-2.128772525,0.034061236,neg,ns,0.063305498,Helt,Helt_fiveUTR,8,46294633,46294682,46294681,46294682,50,+,TCCAGAGTCATTAAAGTAATTAAGTAAGCCTTTAATAGGCTGTTCCGCCG,Promoter (<=1kb),8,46292039,46294671,2633,2,Helt-201,0,Helt-201;Helt-202;Helt-203,Helt;Helt;Helt,0;-644;-1298,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,7,22,234219,ENSMUSG00000047171,conserved gene but different region,8,46294678,46294897,220,*,220,21,0.65,0.923630548,0.095454546,6.99E-16,CpGisland,TRUE,U13,Hc-P
19663,cg16744571,-0.000000542,0.00000341,-0.159015809,0.873759964,loss,ns,0.0000108,0.00000579,1.8701371,0.062407072,pos,ns,-0.000582043,0.00169712,-0.342959072,0.731861696,neg,ns,0.135570982,-0.0000139,0.0000584,-0.238601443,0.811572296,neg,ns,0.955124124,Eda,Eda_Exon,X,100395042,100395091,100395090,100395091,50,-,GACTGGTCTCGCATCACTATGAACCCCAAGGTGTTTAAGCTACATCCCCG,"Exon (Eda-208/Eda, exon 6 of 7)",20,99975606,100400759,425154,1,Eda-208,419436,Eda-208;Eda-209;Eda-202;Eda-203;Eda-206;Eda-205;Eda-207;Eda-204;Eda-201;Eda-212;Eda-210,Eda;Eda;Eda;Eda;Eda;Eda;Eda;Eda;Eda;Eda;Eda,0;0;0;0;0;0;0;0;0;9899;7787,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,Exon,5,9,13607,ENSMUSG00000059327,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11817,cg07271972,-0.00000247,0.00000289,-0.856818051,0.392207302,loss,ns,0.00000917,0.0000049,1.870044963,0.062419907,pos,ns,0.005364807,0.001435993,3.735955345,0.000222557,pos,ns,3.652558,-0.000334951,0.0000494,-6.782632339,5.98E-11,neg,yes,0.946210033,Uaca,Uaca_Intron,9,60927159,60927208,60927207,60927208,50,-,GAGAAAAACCAAATTACCCTTTAGCATGCCTAAGAGGATTTTGTCTGTCG,"Intron (Gm47923-201/Gm47923-201, intron 1 of 1)",9,60866145,60870130,3986,1,Uaca-204,61063,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,7,72565,ENSMUSG00000034485,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3744,cg14550267,0.0000177,0.00000378,4.689994145,0.0000041,gain,ns,0.000012,0.00000643,1.870006804,0.062425224,pos,ns,0.005179619,0.001883425,2.75010674,0.006307505,pos,ns,2.200142369,-0.0000541,0.0000648,-0.835028392,0.404344788,neg,ns,0.087962335,Adgrb3,Adgrb3_fiveUTR,1,25228481,25228530,25228529,25228530,50,+,CGTATGGGATGCATCGGTAAGCACAGTTTTACATCCCTGGGTGGACCACG,Promoter (<=1kb),1,25067476,25228826,161351,2,Adgrb3-203,296,Adgrb3-203;Adgrb3-206;Adgrb3-205;Adgrb3-207;Adgrb3-201;Adgrb3-208;Adgrb3-202;Adgrb3-204;Gm15702-201,Adgrb3;Adgrb3;Adgrb3;Adgrb3;Adgrb3;Adgrb3;Adgrb3;Adgrb3;Gm15702,0;0;0;0;0;0;0;0;4751,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,7,25,210933,ENSMUSG00000033569,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19854,cg13690286,0.0000541,0.00000809,6.695198637,1.01E-10,gain,yes,0.0000257,0.0000137,1.869751399,0.062460819,pos,ns,0.017521854,0.004025078,4.353171691,0.0000182,pos,ns,4.738795378,-0.000219385,0.000138422,-1.584899306,0.114008758,neg,ns,0.151243542,Stard10,Stard10_fiveUTR,7,101321697,101321746,101321745,101321746,50,-,CCAAACCGGTCTTGCAGGTCCCAGGAAGGTGGCGTCAGCATCTGCAGCCG,Promoter (<=1kb),7,101321714,101346189,24476,1,Stard10-210,0,Stard10-202;Stard10-203;Stard10-201;Stard10-211;Stard10-205;Stard10-210;Stard10-204;Stard10-206;Stard10-207;Stard10-208,Stard10;Stard10;Stard10;Stard10;Stard10;Stard10;Stard10;Stard10;Stard10;Stard10,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,6,56018,ENSMUSG00000030688,conserved gene and region,7,101320954,101321820,867,*,867,92,0.730103806,0.796843157,0.106113033,2.28E-72,CpGisland,TRUE,U1,Pr-A
27668,cg03186150,-0.0000129,0.00000285,-4.543843298,0.00000792,loss,ns,0.00000904,0.00000483,1.869440864,0.06250412,pos,ns,0.000391332,0.001416133,0.276338626,0.782472132,pos,ns,0.106531121,-0.00000989,0.0000487,-0.203057828,0.839223048,neg,ns,0.950136045,Sdccag8,Sdccag8_Intron,1,176946608,176946657,176946608,176946609,50,+,CGGGAAATGCTCTGAGCTTACAGTTAGAGTCTCCTGAATAGCATTGAACA,"Intron (Sdccag8-204/Sdccag8, intron 15 of 16)",1,176814660,176956360,141701,1,Sdccag8-204,131948,Sdccag8-204;Sdccag8-201;Sdccag8-203,Sdccag8;Sdccag8;Sdccag8,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,20,76816,ENSMUSG00000026504,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15864,cg17886256,0.000000863,0.000000477,1.806929222,0.071742782,gain,ns,-0.00000152,0.000000811,-1.869163661,0.062542794,neg,ns,-0.0000189,0.000237642,-0.079460649,0.936717499,neg,ns,0.028391366,-0.000000141,0.00000817,-0.017239538,0.98625661,neg,ns,0.013756125,Gm6411,Gm6411_Intron,13,83729770,83729819,83729818,83729819,50,-,GCTGACGTCAATGGACGTGACCTCGCAGCTAAACCTTGAACGTGAAGCCG,"Intron (C130071C03Rik-201/C130071C03Rik-201, intron 1 of 3)",13,83761132,83762335,1204,2,Gm6411-201,32565,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,36,623241,NA,mapped to different genes,13,83729748,83729900,153,*,153,14,0.620915033,0.998136067,0.091503268,1.88E-10,CpGisland,TRUE,U3,Pr-B
8693,cg12236204,0.0000974,0.0000102,9.516403001,5.27E-19,gain,yes,-0.0000325,0.0000174,-1.868974367,0.062569215,neg,ns,0.011743054,0.005095064,2.304790045,0.021838814,pos,ns,1.660770956,-0.000485284,0.000175219,-2.769585865,0.005951081,neg,ns,0.066531026,Gm31907,Gm31907_fiveUTR,18,45559325,45559374,45559325,45559326,50,+,CGCAAACTCAGTCTCGGTCCCCGCAGGTGATGTCATGCCCATTGTTTTGG,Promoter (<=1kb),18,45501590,45560130,58541,2,Gm31907-202,756,Gm31907-202;Kcnn2-205;Kcnn2-201;Kcnn2-207;Kcnn2-206;Kcnn2-202;Kcnn2-208;Kcnn2-203,Gm31907;Kcnn2;Kcnn2;Kcnn2;Kcnn2;Kcnn2;Kcnn2;Kcnn2,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,15,15,102634286,NA,mapped to different genes,18,45559316,45559326,11,*,11,5,1,1.833333333,0.454545455,2.31E-08,CpGisland,TRUE,U3,Pr-B
23586,cg02709617,0.0000503,0.00000823,6.113219354,2.93E-09,gain,yes,-0.0000261,0.000014,-1.868938623,0.062574206,neg,ns,0.006209972,0.004097163,1.515675958,0.13062029,pos,ns,0.883989358,-0.000241392,0.000140901,-1.713202697,0.087675034,neg,ns,0.071893815,Hs6st3,Hs6st3_fiveUTR,14,119138398,119138447,119138446,119138447,50,-,GGCCTGAGAGCGGGACCATGGATGAAAGGTTCAACAAGTGGCTGCTGACG,Promoter (<=1kb),14,119138341,119869815,731475,1,Hs6st3-201,57,Hs6st3-201,Hs6st3,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,5,50787,ENSMUSG00000053465,conserved gene but different region,14,119137599,119138920,1322,*,1322,145,0.705748865,0.880920212,0.1096823,5.90E-116,CpGisland,TRUE,U3,Pr-B
15656,cg10178274,0.0000701,0.00000911,7.688333766,1.99E-13,gain,yes,-0.0000289,0.0000155,-1.868924621,0.06257616,neg,ns,0.012066443,0.004535514,2.660435472,0.008210076,pos,ns,2.085652804,-0.000361493,0.000155976,-2.317622178,0.021120785,neg,ns,0.097006515,Nfib,Nfib_Intron,4,82507807,82507856,82507855,82507856,50,+,TTGAACACACCTCTTTGAATGCCTGGACTCTCATAGAAGCCATTATTTCG,"Intron (Nfib-212/Nfib, intron 1 of 1)",4,82498321,82705750,207430,2,Nfib-212,197894,Nfib-201;Nfib-203;Nfib-202;Nfib-205;Nfib-206;Nfib-204;Nfib-207;Nfib-209;Nfib-210;Nfib-208;Nfib-212,Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,66,18028,ENSMUSG00000008575,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15548,cg05225604,-0.0000472,0.0000081,-5.831828934,1.38E-08,loss,yes,-0.0000257,0.0000138,-1.868864269,0.062584587,neg,ns,0.020268178,0.004031974,5.026862503,0.000000845,pos,ns,6.073338525,-0.000777698,0.000138659,-5.608696764,4.52E-08,neg,yes,0.771292957,Adgrl3,Adgrl3_threeUTR,5,81694490,81694539,81694538,81694539,50,+,AGCTACTCCAAGCGTACAATGACAGGTTATTGGTCAACACAAGGCTGTCG,3' UTR,5,81020571,81796634,776064,1,Adgrl3-223,673919,Adgrl3-223;Adgrl3-203;Adgrl3-211;Adgrl3-217;Adgrl3-232;Adgrl3-207;Adgrl3-205;Adgrl3-206;Adgrl3-208;Adgrl3-212;Adgrl3-213;Adgrl3-214;Adgrl3-215;Adgrl3-216;Adgrl3-209;Adgrl3-218;Adgrl3-219;Adgrl3-204;Adgrl3-210;Adgrl3-201;Adgrl3-202;Adgrl3-220,Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,13,319387,ENSMUSG00000037605,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18968,cg04762699,-0.00000867,0.00000421,-2.060536349,0.040181391,loss,ns,-0.0000134,0.00000715,-1.868839765,0.062588008,neg,ns,-0.00666247,0.002094211,-3.181374362,0.00161425,neg,ns,2.79202912,-0.0000249,0.000072,-0.34546587,0.729978468,neg,ns,0.892802541,Nfia,Nfia_Exon,4,98081762,98081811,98081762,98081763,50,+,CGTCAGTGTTGGACCACGGGATCCAAGCTTTGTAAATATCCCTCAACAGA,"Exon (Nfia-202/Nfia, exon 10 of 11)",4,97777608,98118871,341264,1,Nfia-202,304154,Nfia-202;Nfia-203;Nfia-205;Nfia-201;Nfia-204,Nfia;Nfia;Nfia;Nfia;Nfia,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,44,18027,ENSMUSG00000028565,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26035,cg14439745,0.0000783,0.0000062,12.63560242,8.36E-30,gain,yes,-0.0000197,0.0000105,-1.868798249,0.062593806,neg,ns,-0.003582383,0.003084903,-1.16126285,0.246428409,neg,ns,0.608309227,0.000314788,0.00010609,2.967187282,0.003239287,pos,ns,0.712406867,Kcnq1,Kcnq1_Intron,7,143325261,143325310,143325261,143325262,50,+,CGGCGCACACAGCTCCCAGCCTGGCTTCCCTTGAACAAACATATTTATTG,"Intron (Kcnq1-201/Kcnq1, intron 11 of 15)",7,143107254,143427042,319789,1,Kcnq1-201,218007,Kcnq1-201;Kcnq1-202,Kcnq1;Kcnq1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,9,16535,ENSMUSG00000009545,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19466,cg05668084,0.000000823,0.00000144,0.572072015,0.567687787,gain,ns,0.00000457,0.00000244,1.868708418,0.062606351,pos,ns,0.00128804,0.000715904,1.799178981,0.072962815,pos,ns,1.136898417,-0.0000269,0.0000246,-1.091092728,0.27607939,neg,ns,0.95980948,Gm12685,Gm12685_Intergenic_downstream,4,99375040,99375089,99375088,99375089,50,-,GGGAGGACAGGGCCTTGTAAAGCCTACAAATCTTTTATTATTCTCTGCCG,Distal Intergenic,4,99418498,99418711,214,2,Gm12685-201,43671,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,13,13,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9916,cg21307150,0.00000385,0.0000013,2.958830429,0.003325912,gain,ns,-0.00000413,0.00000221,-1.868588728,0.06262307,neg,ns,-0.000553895,0.000647829,-0.855000987,0.393210894,neg,ns,0.405374458,0.000021,0.0000223,0.942823513,0.346505358,pos,ns,0.038911483,Shc3,Shc3_Promoter,13,51569534,51569583,51569582,51569583,50,-,TTCAACAAAGGCTTGCTCAATAGTGGAAGATTCCATTTCAATCAAAGGCG,Promoter (<=1kb),13,51431041,51569487,138447,2,Shc3-203,-96,Shc3-201;Shc3-203;Shc3-204;Shc3-202,Shc3;Shc3;Shc3;Shc3,-2450;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,4,20418,NA,mapped to different genes,13,51569385,51569583,199,*,199,11,0.552763819,0.743546196,0.055276382,0.00000442,CpGisland,TRUE,NA,NRS
12195,cg12898126,0.00000798,0.00000593,1.345327495,0.179502749,gain,ns,-0.0000188,0.0000101,-1.86854642,0.062628981,neg,ns,0.022218869,0.00295131,7.52847751,5.64E-13,pos,yes,12.24904822,-0.000568877,0.000101495,-5.604963478,4.61E-08,neg,yes,0.866893505,Map2k5,Map2k5_Intron,9,63322340,63322389,63322388,63322389,50,-,GCCATAAACAACAAGCAGTCTGGGTCATTTCAAGTTCAGCTGCAAAAACG,"Intron (Map2k5-201/Map2k5, intron 7 of 21)",9,63163768,63377902,214135,2,Map2k5-201,55513,Map2k5-201,Map2k5,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,34,37,23938,ENSMUSG00000058444,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23146,cg17619415,-0.00000267,0.0000012,-2.22162488,0.027030573,loss,ns,-0.00000381,0.00000204,-1.867573507,0.062765031,neg,ns,-0.000187322,0.000598053,-0.313220272,0.754323948,neg,ns,0.122442104,-0.0000108,0.0000206,-0.526238876,0.599098526,neg,ns,0.969137592,Rnf220,Rnf220_Intron,4,117349831,117349880,117349831,117349832,50,+,CGTGTAATTTTCCCAGGCGATTTTCTGCTGAAATATTTCTTTATTAATAG,"Intron (Rnf220-201/Rnf220, intron 2 of 14)",4,117271463,117497052,225590,2,Rnf220-201,147172,Rnf220-201;Rnf220-202;Rnf220-207,Rnf220;Rnf220;Rnf220,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7231,cg20608335,-0.00000846,0.00000582,-1.453620303,0.147063196,loss,ns,0.0000185,0.00000989,1.867517492,0.062772872,pos,ns,0.00479382,0.00289742,1.654513269,0.099035355,pos,ns,1.004209737,-0.000222951,0.0000996,-2.237515285,0.025962954,neg,ns,0.879112497,Gria3,Gria3_threeUTR,X,41676443,41676492,41676443,41676444,50,+,CGAATATTGCTGATGGTGCAATGACCTTTCAATAGGAAAAACTGATTTTT,3' UTR,20,41401128,41676585,275458,1,Gria3-202,275315,Gria3-202;Gria3-201;Gria3-208;Gria3-206;Gria3-209,Gria3;Gria3;Gria3;Gria3;Gria3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,26,53623,ENSMUSG00000001986,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23940,cg06954407,0.000000038,0.00000316,0.012026364,0.990412317,gain,ns,0.00001,0.00000537,1.867469737,0.062779557,pos,ns,0.004912338,0.001571796,3.125302202,0.001944359,pos,ns,2.711223495,-0.000169663,0.0000541,-3.138780582,0.001859763,neg,ns,0.938062596,Trp53bp1,Trp53bp1_threeUTR,2,121228135,121228184,121228135,121228136,50,+,CGGCATGATTGTTACCTCCCAGCACTGACTAGAGAAAACAAATAGGTTAA,3' UTR,2,121194838,121271341,76504,2,Trp53bp1-201,43157,Trp53bp1-201;Trp53bp1-202;Trp53bp1-216;Trp53bp1-208;Trp53bp1-215;Trp53bp1-203,Trp53bp1;Trp53bp1;Trp53bp1;Trp53bp1;Trp53bp1;Trp53bp1,0;0;0;0;7505;7637,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,5,5,27223,ENSMUSG00000043909,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23651,cg13513622,0.0000584,0.0000106,5.501854136,7.88E-08,gain,yes,0.0000337,0.000018,1.867405244,0.062788586,pos,ns,0.005120127,0.005283555,0.969068506,0.333266462,pos,ns,0.477208389,-0.000283277,0.000181701,-1.559030178,0.120009513,neg,ns,0.553339007,Fbxl14,Fbxl14_Exon,6,119480883,119480932,119480883,119480884,50,-,CGCATCACGGACAAGGGCCTGGAGCTGATCGCTGAGCACCTGAGCCAACT,"Exon (Fbxl14-201/Fbxl14, exon 1 of 1)",6,119479668,119482630,2963,1,Fbxl14-201,1215,Fbxl14-201;Wnt5b-204;Wnt5b-203,Fbxl14;Wnt5b;Wnt5b,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,101358,ENSMUSG00000030019,conserved gene and region,6,119480816,119480993,178,*,178,15,0.629213483,0.852490422,0.084269663,1.21E-10,CpGisland,TRUE,NA,NRS
23067,cg19946081,0.0000138,0.00000429,3.228737175,0.00137665,gain,ns,-0.0000136,0.00000728,-1.867391307,0.062790537,neg,ns,0.000946972,0.002133814,0.443792959,0.657501879,pos,ns,0.182103002,-0.000227936,0.0000734,-3.106164092,0.002070589,neg,ns,0.900797244,Taok3,Taok3_Exon,5,117272126,117272175,117272174,117272175,50,-,ATGCCAGGCCTTGAGGCTACAGCTCCAGCAGGAAATGGAGCTGCTCAACG,"Exon (Taok3-203/Taok3, exon 20 of 21)",5,117120129,117275217,155089,1,Taok3-203,151997,Taok3-203;Taok3-210;Taok3-201;Taok3-202,Taok3;Taok3;Taok3;Taok3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,20,330177,ENSMUSG00000061288,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16360,cg26767614,0.0000217,0.00000771,2.812627491,0.005227351,gain,ns,-0.0000245,0.0000131,-1.867337391,0.062798086,neg,ns,0.011169514,0.003839036,2.909457986,0.00388242,pos,ns,2.410897526,-0.000182553,0.000132024,-1.382723681,0.167744829,neg,ns,0.718130441,Nfix,Nfix_Exon,8,84771933,84771982,84771981,84771982,50,-,AACAAAATCACCATGACCAGGTCCAGCCGCCACACCTTGTCAGCCTGGCG,"Exon (Nfix-204/Nfix, exon 2 of 11)",8,84704712,84773396,68685,2,Nfix-204,1414,Nfix-204;Nfix-201;Nfix-202;Nfix-203;Nfix-205,Nfix;Nfix;Nfix;Nfix;Nfix,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,20,49,18032,ENSMUSG00000001911,conserved gene but different region,8,84771960,84772433,474,*,474,36,0.61814346,0.805285512,0.075949367,3.03E-23,CpGisland,TRUE,U13,Hc-P
9260,cg23646867,0.000000423,0.00000269,0.157455411,0.874988452,gain,ns,0.00000853,0.00000457,1.867192634,0.062818358,pos,ns,0.000775663,0.001337915,0.579755203,0.562500811,pos,ns,0.249876847,-0.0000034,0.000046,-0.073934437,0.941110237,neg,ns,0.925503128,Foxp4,Foxp4_Intron,17,47872397,47872446,47872445,47872446,50,-,TACCAATTTTAATTTGCCTCTAATTAAATCCTGTGTATTTTTCCGACTCG,"Intron (Foxp4-204/Foxp4, intron 13 of 16)",17,47867133,47924645,57513,2,Foxp4-204,52199,Foxp4-204;Foxp4-203;Foxp4-201;Foxp4-202,Foxp4;Foxp4;Foxp4;Foxp4,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,25,74123,ENSMUSG00000023991,conserved gene and region,17,47872440,47872721,282,*,282,26,0.563829787,1.163809524,0.092198582,3.73E-19,CpGisland,TRUE,U10,Tr-S
27298,cg02421251,-0.0000223,0.0000153,-1.452681543,0.147323623,loss,ns,0.0000487,0.0000261,1.867160172,0.062822905,pos,ns,-0.007020215,0.007634171,-0.91957787,0.358508378,neg,ns,0.445500691,0.000434854,0.000262539,1.656342262,0.09866431,pos,ns,0.738015832,Gorab,Gorab_Intergenic_upstream,1,163461518,163461567,163461518,163461519,50,-,CGGTTTTTAGCACAGAAGTGATTGAACTCCAGATGTTAACAAGATGCAGC,Distal Intergenic,1,163384908,163403669,18762,2,Gorab-201,-57898,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,2,98376,ENSMUSG00000040124,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6890,cg26636593,0.00000229,0.00000667,0.342771595,0.732002603,gain,ns,-0.0000212,0.0000113,-1.867148802,0.062824498,neg,ns,-0.005175418,0.003319103,-1.559281884,0.119949951,neg,ns,0.920999924,0.000213176,0.000114144,1.867613238,0.06275947,pos,ns,0.892600892,Gm18591,Gm18591_Intergenic_downstream,12,39301459,39301508,39301459,39301460,50,-,CGACCTGCTAATTTAGAGCATATGTAACTGTTTTTAATGCTGAAGGCTTG,Distal Intergenic,12,39208892,39209654,763,1,Gm18591-201,92616,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,5,100417403,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14595,cg10779098,0.0000147,0.00000486,3.025640035,0.002688846,gain,ns,0.0000154,0.00000826,1.867083134,0.062833697,pos,ns,0.005265253,0.002420629,2.175159038,0.030373685,pos,ns,1.517502521,-0.000126721,0.0000832,-1.522265981,0.12896183,neg,ns,0.88651926,Pcbp3,Pcbp3_Exon,10,76785130,76785179,76785130,76785131,50,-,CGGCTCTTACCTGACCACCTGCAAAAATGACAGGGGTGGAGGCGGGCTTT,"Exon (Pcbp3-201/Pcbp3, exon 10 of 16)",10,76761857,76961788,199932,2,Pcbp3-201,176609,Pcbp3-201;Pcbp3-207;Pcbp3-206;Pcbp3-203;Pcbp3-205;Pcbp3-209;Pcbp3-202;Pcbp3-208,Pcbp3;Pcbp3;Pcbp3;Pcbp3;Pcbp3;Pcbp3;Pcbp3;Pcbp3,0;0;0;0;0;0;0;120683,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,59093,ENSMUSG00000001120,conserved gene and region,10,76784969,76785131,163,*,163,14,0.656441718,0.823232323,0.085889571,4.50E-10,CpGisland,TRUE,U15,NS
20107,cg02019508,-0.00000261,0.00000289,-0.901135146,0.368216019,loss,ns,0.00000917,0.00000491,1.867007784,0.062844254,pos,ns,0.003512291,0.00143971,2.439582785,0.0152646,pos,ns,1.81631456,-0.000106832,0.0000495,-2.157724827,0.031717109,neg,ns,0.956272022,Atf7,Atf7_Intron,15,102594080,102594129,102594080,102594081,50,-,CGGAAGCCATATTTCTGAACGAGAGAAGACCAAAATTTGTCATTTAATTA,"Intron (Gm28047-201/Gm28047, intron 1 of 12)",15,102525946,102625073,99128,2,Atf7-211,30944,Atf7-211;Atf7-210;Atf7-209;Atf7-202;Atf7-203;Atf7-205;Atf7-204;Atf7-206;Atf7-208;Atf7-213;Atf7-212;Atf7-207;Gm28047-201,Atf7;Atf7;Atf7;Atf7;Atf7;Atf7;Atf7;Atf7;Atf7;Atf7;Atf7;Atf7;Gm28047,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,11,223922,ENSMUSG00000099083,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25899,cg05684493,0.00000554,0.00000265,2.093267731,0.037137675,gain,ns,-0.00000839,0.00000449,-1.86694756,0.062852692,neg,ns,0.0000409,0.001316854,0.031023829,0.9752705,pos,ns,0.010874912,-0.0000804,0.0000453,-1.775390424,0.076814505,neg,ns,0.943850252,Plekha5,Plekha5_Intron,6,140563503,140563552,140563503,140563504,50,-,CGTCTTTCAAATCTAGCTATGCTGTAAACTGATGTTTGCTGTATGCTCCT,"Intron (Plekha5-201/Plekha5, intron 15 of 30)",6,140424054,140597110,173057,1,Plekha5-201,139449,Plekha5-201;Plekha5-209;Plekha5-205;Plekha5-207;Plekha5-215;Plekha5-208;Plekha5-202;Plekha5-214;Plekha5-216,Plekha5;Plekha5;Plekha5;Plekha5;Plekha5;Plekha5;Plekha5;Plekha5;Plekha5,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,3,109135,ENSMUSG00000030231,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5567,cg20037279,-0.00000424,0.0000018,-2.354061894,0.019193274,loss,ns,-0.00000572,0.00000306,-1.866917493,0.062856905,neg,ns,-0.001373095,0.000897045,-1.530686405,0.126866703,neg,ns,0.896652347,0.00000388,0.0000308,0.125651341,0.900089369,pos,ns,0.93766812,Pbx3,Pbx3_Intron,2,34275806,34275855,34275806,34275807,50,+,CGCCGCTCCGTTAGCCCTCATTACCCCGATCACTGCAAATACAGATGCAA,"Intron (Pbx3-202/Pbx3, intron 2 of 7)",2,34171457,34372038,200582,2,Pbx3-202,96183,Pbx3-202;Pbx3-201;Pbx3-210;Pbx3-206;Pbx3-207;Pbx3-209;Pbx3-204;Pbx3-205;Pbx3-203,Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,82,18516,ENSMUSG00000038718,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4404,cg24595693,-0.0000351,0.0000062,-5.660662645,3.44E-08,loss,yes,-0.0000197,0.0000105,-1.866663296,0.062892535,neg,ns,0.000333919,0.00308518,0.10823317,0.913880752,pos,ns,0.039110469,-0.000132781,0.000106099,-1.251478296,0.211703569,neg,ns,0.867213538,Hnrnpl,Hnrnpl_Exon,7,28817296,28817345,28817296,28817297,50,-,CGTGACTTGTATTTATGACTGTAAAACCATGTGATGCAGGGTCGCAGTGT,"Exon (Hnrnpl-213/Hnrnpl, exon 6 of 13)",7,28808541,28822266,13726,1,Hnrnpl-211,8755,Hnrnpl-211;Hnrnpl-206;Hnrnpl-202;Hnrnpl-204;Hnrnpl-201;Hnrnpl-209;Hnrnpl-212;Hnrnpl-213;Hnrnpl-208;Hnrnpl-207;Hnrnpl-203;Hnrnpl-205;Hnrnpl-210,Hnrnpl;Hnrnpl;Hnrnpl;Hnrnpl;Hnrnpl;Hnrnpl;Hnrnpl;Hnrnpl;Hnrnpl;Hnrnpl;Hnrnpl;Hnrnpl;Hnrnpl,0;8490;0;7778;0;0;6356;0;3918;0;0;0;-3868,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,4,15388,ENSMUSG00000015165,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12970,cg15600395,-0.000118495,0.0000178,-6.650728751,1.32E-10,loss,yes,0.0000565,0.0000303,1.866645638,0.062895011,pos,ns,-0.00930112,0.008867602,-1.04888777,0.295046812,neg,ns,0.530109073,0.0000278,0.000304956,0.091238911,0.927361685,pos,ns,0.595539178,Gm4842,Gm4842_Intron,18,68943902,68943951,68943902,68943903,50,-,CGGCCTAATTGTCAGCCCTGATTGGGAGCCAAGTTTATCCCCGGACGGAT,"Intron (4930546C10Rik-202/4930546C10Rik-202, intron 3 of 6)",18,69256288,69257122,835,1,Gm4842-201,-312386,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,10,225681,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22748,cg11566569,-0.00000796,0.00000295,-2.700381806,0.007306522,loss,ns,0.00000935,0.00000501,1.866643733,0.062895278,pos,ns,0.003418951,0.001467755,2.329374856,0.020481377,pos,ns,1.688640856,-0.000107491,0.0000505,-2.129551543,0.033996266,neg,ns,0.938827089,Meis2,Meis2_Intron,2,115905141,115905190,115905141,115905142,50,-,CGAATATTGAAAGAAATACAATGCGTAAGTAGATTTTACACCACATTAGA,"Intron (Meis2-201/Meis2, intron 9 of 11)",2,115863064,116065047,201984,2,Meis2-201,159857,Meis2-201;Meis2-203;Meis2-205;Meis2-206;Meis2-204;Meis2-202;Meis2-216,Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,45,97,17536,ENSMUSG00000027210,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7325,cg27278151,-0.00000316,0.00000215,-1.47039111,0.142470088,loss,ns,-0.0000068,0.00000365,-1.866583835,0.062903677,neg,ns,-0.00253246,0.001067983,-2.371256264,0.018338683,neg,ns,1.736631867,0.0000307,0.0000367,0.835690407,0.403972731,pos,ns,0.962509062,Rbm27,Rbm27_Exon,18,42313988,42314037,42313988,42313989,50,-,CGTGAACATGGTGCTGCTGCATCTGAGCGACTTCAGTTGGGGACACCGCC,"Exon (Rbm27-201/Rbm27, exon 9 of 20)",18,42275353,42341542,66190,1,Rbm27-201,38635,Rbm27-201;Rbm27-202;Rbm27-203;Rbm27-205,Rbm27;Rbm27;Rbm27;Rbm27,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,10,225432,ENSMUSG00000024491,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14402,cg10804966,0.00000148,0.0000103,0.143812707,0.885741809,gain,ns,0.0000325,0.0000174,1.866472461,0.062919295,pos,ns,0.008809157,0.005106534,1.725075436,0.085510524,pos,ns,1.067980434,-0.000150977,0.000175613,-0.859710445,0.390613013,neg,ns,0.327437819,Asic4,Asic4_Intron,1,75458035,75458084,75458035,75458036,50,+,CGCTTGGCTCAGCGGTGACTAAGCGTGGACAGGATAATAGCTTACAAATG,"Intron (Asic4-202/Asic4, intron 1 of 8)",1,75450436,75474340,23905,1,Asic4-202,7599,Asic4-202;Asic4-201,Asic4;Asic4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,11,241118,ENSMUSG00000033007,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6017,cg23573900,-0.0000312,0.00000784,-3.975856298,0.0000873,loss,ns,0.0000248,0.0000133,1.866468343,0.062919873,pos,ns,0.00141907,0.003900472,0.36382011,0.716240345,pos,ns,0.144941219,-0.000150235,0.000134137,-1.120015687,0.263574061,neg,ns,0.559431219,Cxxc5,Cxxc5_Intron,18,35855711,35855760,35855759,35855760,50,+,TTTCTTTTTGGGGGCTGGATGTGTTCCTGGCAGGGCCGATGATGGATGCG,"Intron (Gm50371-201/Gm50371-201, intron 4 of 4)",18,35829397,35859002,29606,1,Cxxc5-202,26314,Cxxc5-202;Cxxc5-201;Cxxc5-206;Cxxc5-203;Cxxc5-204;Cxxc5-205,Cxxc5;Cxxc5;Cxxc5;Cxxc5;Cxxc5;Cxxc5,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,49,67393,ENSMUSG00000046668,conserved gene and region,18,35855560,35855824,265,*,265,22,0.671698113,0.73685541,0.083018868,2.89E-15,CpGisland,TRUE,U8,En-Pd
16986,cg00712594,0.00000197,0.00000166,1.186040617,0.236514503,gain,ns,0.00000526,0.00000282,1.866308095,0.062942351,pos,ns,0.002206274,0.000825417,2.672920923,0.007917419,pos,ns,2.101416358,-0.0000418,0.0000284,-1.471710299,0.142113543,neg,ns,0.965440349,Zfp423,Zfp423_Intron,8,87749950,87749999,87749998,87749999,50,-,TCTGTGGAAACTGCTTTCCATGTAATTATTCTTGCTATTTTACATTAGCG,"Intron (Zfp423-203/Zfp423, intron 3 of 5)",8,87661810,87804439,142630,2,Zfp423-203,54440,Zfp423-203;Zfp423-202;Zfp423-201,Zfp423;Zfp423;Zfp423,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,42,53,94187,ENSMUSG00000045333,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9664,cg14303740,-0.0000154,0.00000864,-1.780302238,0.076005857,loss,ns,0.0000274,0.0000147,1.866253055,0.062950073,pos,ns,-0.005951278,0.004302306,-1.383276205,0.167575573,neg,ns,0.775789288,0.000213205,0.000147956,1.441005741,0.150592354,pos,ns,0.885227348,Igsf1,Igsf1_Intron,X,49786730,49786779,49786730,49786731,50,+,CGCCACGCCTGCCTGGCTCTAAGATTGGACACAGGCTCTCAGGACCAGCA,"Intron (Igsf1-204/Igsf1, intron 4 of 10)",20,49782536,49788243,5708,2,Igsf1-204,1464,Igsf1-204;Igsf1-201;Igsf1-202,Igsf1;Igsf1;Igsf1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,209268,ENSMUSG00000031111,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27922,cg06142835,-0.0000164,0.00000544,-3.016808067,0.002766097,loss,ns,0.0000173,0.00000925,1.866247757,0.062950816,pos,ns,-0.003367514,0.002709587,-1.242814803,0.214875298,neg,ns,0.667813508,0.000102618,0.0000932,1.101255685,0.271639718,pos,ns,0.893365427,Prox1,Prox1_Intergenic_upstream,1,190375039,190375088,190375039,190375040,50,+,CGTTTCATGTTTGTTAATACCACCTCGCCTTTTGAAGTTTAAAGCAAGGT,Distal Intergenic,1,190118035,190170714,52680,2,Prox1-202,-204325,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,13,59,19130,ENSMUSG00000010175,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27899,cg26405606,-0.00000684,0.00000366,-1.866635091,0.06289649,loss,ns,-0.0000116,0.00000622,-1.866059795,0.062977194,neg,ns,-0.00465226,0.001822984,-2.552002479,0.01119008,neg,ns,1.951166827,0.000043,0.0000627,0.686310706,0.493030196,pos,ns,0.87948605,Prox1,Prox1_Exon,1,190161495,190161544,190161495,190161496,50,+,CGCAGCTGTTTCTGCATGTCCTCCAGCTGCTGTTTCAGCTGTCGGCGCTC,"Exon (Prox1-202/Prox1, exon 2 of 5)",1,190118035,190170714,52680,2,Prox1-202,9170,Prox1-202;Prox1-201;Prox1-203,Prox1;Prox1;Prox1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,19,59,19130,ENSMUSG00000010175,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4647,cg00914030,0.0000116,0.00000641,1.810088425,0.071250307,gain,ns,0.0000203,0.0000109,1.866044882,0.062979287,pos,ns,0.012781519,0.00318859,4.008517396,0.0000766,pos,ns,4.115790014,-0.000551955,0.000109655,-5.033547106,0.000000818,neg,yes,0.216040358,Gm19640,Gm19640_Intergenic_downstream,9,30030425,30030474,30030425,30030426,50,+,CGGGCTGTAAAGGTTTCATTAGCTTGCCTCACAGTCATTACGTCAAGTAA,Distal Intergenic,9,30063256,30063719,464,2,Gm19640-201,33245,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,4,100503335,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26520,cg06725850,0.00000908,0.00000829,1.095376214,0.27420213,gain,ns,-0.0000263,0.0000141,-1.865847256,0.063007031,neg,ns,-0.002070373,0.004124142,-0.502013088,0.616014684,neg,ns,0.210408935,0.000193323,0.000141829,1.363070154,0.173849615,pos,ns,0.404858127,Casz1,Casz1_Intron,4,148867357,148867406,148867405,148867406,50,+,ACGGTCGGTCACAGTTGTAAAACAACAACACACAGAGTTGGCAACTAACG,"Intron (Casz1-201/Casz1, intron 2 of 15)",4,148804429,148945129,140701,1,Casz1-201,62928,Casz1-201;Casz1-202,Casz1;Casz1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,94,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17898,cg07987507,0.0000366,0.0000111,3.297773733,0.001087859,gain,ns,-0.0000352,0.0000189,-1.865739316,0.063022188,neg,ns,0.013031684,0.005526187,2.358169268,0.018986011,pos,ns,1.721566266,-0.000599631,0.000190045,-3.155202419,0.001761286,neg,ns,0.699930937,Dlg2,Dlg2_Intron,7,92417137,92417186,92417185,92417186,50,-,CTTTTACAAACTAGTTGTTTTGTCAGCATGAGTGTGACAACAATTAGACG,"Intron (Dlg2-217/Dlg2, intron 21 of 27)",7,90477231,92449247,1972017,1,Dlg2-217,1939906,Dlg2-217;Dlg2-204;Dlg2-201;Dlg2-220;Dlg2-218;Dlg2-219;Dlg2-203;Dlg2-202;Dlg2-212;Dlg2-208;Dlg2-207;Dlg2-214,Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,21,23859,ENSMUSG00000052572,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9268,cg02270531,-0.00000414,0.00000312,-1.326588425,0.185621276,loss,ns,-0.00000989,0.0000053,-1.865596385,0.063042264,neg,ns,-0.002909917,0.001553775,-1.87280424,0.062036456,neg,ns,1.20735302,0.0000278,0.0000534,0.520111459,0.603357112,pos,ns,0.919177241,Foxp4,Foxp4_Intron,17,47872559,47872608,47872559,47872560,50,-,CGGGGCTCCGATCCTCCGCTTTGCAAATGAGAATGACCCCAATTTCCGAG,"Intron (Foxp4-204/Foxp4, intron 13 of 16)",17,47867133,47924645,57513,2,Foxp4-204,52037,Foxp4-204;Foxp4-203;Foxp4-201;Foxp4-202,Foxp4;Foxp4;Foxp4;Foxp4,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,25,74123,ENSMUSG00000023991,conserved gene and region,17,47872440,47872721,282,*,282,26,0.563829787,1.163809524,0.092198582,3.73E-19,CpGisland,TRUE,U10,Tr-S
25349,cg02913088,-0.00000822,0.00000797,-1.031421468,0.303147231,loss,ns,-0.0000253,0.0000135,-1.865567746,0.063046288,neg,ns,0.000129943,0.003968003,0.032747745,0.973896824,pos,ns,0.011487051,-0.0000747,0.000136459,-0.547770667,0.584243563,neg,ns,0.743246235,Nav1,Nav1_Intron,1,135531320,135531369,135531320,135531321,50,-,CGTCAGTTGTTTTGCTCCAGAGCAGCCTCATCAGCTGGACAAGCCCTAAC,"Intron (Nav1-201/Nav1, intron 3 of 29)",1,135434580,135585355,150776,2,Nav1-201,53986,Nav1-201;Nav1-202;Nav1-208,Nav1;Nav1;Nav1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,12,215690,ENSMUSG00000009418,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24442,cg07083470,0.000000179,0.00000221,0.081137645,0.935384847,gain,ns,-0.000007,0.00000375,-1.865218493,0.063095368,neg,ns,-0.001933233,0.001099482,-1.75831335,0.079680968,neg,ns,1.098645398,0.0000339,0.0000378,0.896208874,0.370836618,pos,ns,0.951390663,Map7d1,Map7d1_Exon,4,126238518,126238567,126238566,126238567,50,+,TTACTTCTACTGGGGGAGTTCCAGAGCGTGGCAGAGGACTTTGAGAGCCG,"Exon (Map7d1-203/Map7d1, exon 6 of 18)",4,126232167,126240111,7945,2,Map7d1-204,1544,Map7d1-204;Map7d1-203;Map7d1-201;Map7d1-202;Map7d1-206;Map7d1-205,Map7d1;Map7d1;Map7d1;Map7d1;Map7d1;Map7d1,0;0;0;0;-4970;-3742,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,245877,ENSMUSG00000028849,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4903,cg04664262,-0.0000114,0.00000634,-1.794705047,0.073674829,loss,ns,-0.0000201,0.0000108,-1.865121512,0.063109003,neg,ns,-0.006146759,0.003154254,-1.948720495,0.052230719,neg,ns,1.282073999,-0.0000028,0.000108475,-0.025772437,0.979455429,neg,ns,0.835129204,Zfp513,Zfp513_Exon,5,31200656,31200705,31200656,31200657,50,-,CGGCCCCCCACACAGCTGGCAGGCTGGGCCTGGCCTCTCACCCCTGGCCT,"Exon (Zfp513-202/Zfp513, exon 3 of 4)",5,31198981,31202303,3323,2,Zfp513-202,1598,Ppm1g-205;Ppm1g-201;Ppm1g-206;Ppm1g-203;Ppm1g-204;Snx17-201;Snx17-202;Snx17-204;Snx17-210;Snx17-208;Snx17-207;Snx17-211;Snx17-209;Snx17-206;Snx17-203;Zfp513-202;Zfp513-201;Zfp513-205;Zfp513-207;Zfp513-203;Zfp513-204;Zfp513-208;Zfp513-206,Ppm1g;Ppm1g;Ppm1g;Ppm1g;Ppm1g;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Zfp513;Zfp513;Zfp513;Zfp513;Zfp513;Zfp513;Zfp513;Zfp513,0;0;4378;0;0;0;0;0;0;0;0;5813;0;0;0;0;0;0;-370;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,15,15,101023,ENSMUSG00000043059,conserved gene and region,5,31200414,31200657,244,*,244,21,0.68442623,0.738115817,0.086065574,6.37E-15,CpGisland,TRUE,U12,Tr-I
22217,cg01701526,-0.0000218,0.00000551,-3.952343525,0.0000959,loss,ns,-0.0000174,0.00000936,-1.864949116,0.063133246,neg,ns,0.004792472,0.002740751,1.748597951,0.081350358,pos,ns,1.089640533,-0.000251292,0.0000943,-2.666109123,0.008075902,neg,ns,0.1369357,Gm11679,Gm11679_Intergenic_downstream,11,111944504,111944553,111944552,111944553,50,+,CCTCCAGGAGCCAGAATCCAATTTCAGAAACCACAAAATCAACATAAACG,Distal Intergenic,11,112042800,112043578,779,2,Gm11679-201,99025,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,7,100504331,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13581,cg14440927,-0.000002,0.00000215,-0.931932802,0.352096475,loss,ns,-0.00000681,0.00000365,-1.864916798,0.063137791,neg,ns,-0.000224802,0.001069673,-0.210159789,0.833681022,neg,ns,0.079000085,-0.00002,0.0000368,-0.545007952,0.586139922,neg,ns,0.940057403,Hat1,Hat1_Exon,2,71421249,71421298,71421249,71421250,50,+,CGACCGTAGGCTACATGACAGTCTATAATTACTATGTGTACCCAGACAAA,"Exon (Hat1-202/Hat1, exon 7 of 11)",2,71388958,71441622,52665,1,Hat1-202,32291,Hat1-202;Hat1-201;Hat1-204,Hat1;Hat1;Hat1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,11,12,107435,ENSMUSG00000027018,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12276,cg03504911,0.0000549,0.0000116,4.738889012,0.00000328,gain,ns,0.0000367,0.0000197,1.864799446,0.063154299,pos,ns,0.005139396,0.005761008,0.892100151,0.373031185,pos,ns,0.42825486,0.0000433,0.000198121,0.218474259,0.827203367,pos,ns,0.728504541,Xkr6,Xkr6_Exon,14,63798244,63798293,63798244,63798245,50,-,CGGCGGAAGGAACACCAGCGACGCTTCTACTGGGCTATGATGTATGAATA,"Exon (Xkr6-201/Xkr6, exon 2 of 3)",14,63606503,63820809,214307,1,Xkr6-201,191741,Xkr6-201;Xkr6-202,Xkr6;Xkr6,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,11,219149,ENSMUSG00000035067,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24747,cg06795397,0.0000104,0.0000119,0.870944054,0.384458655,gain,ns,-0.0000378,0.0000203,-1.864257796,0.063230539,neg,ns,0.029977691,0.005939672,5.047027552,0.000000766,pos,ns,6.115604688,-0.000787068,0.000204265,-3.853173805,0.000141724,neg,ns,0.49514114,Gls2,Gls2_threeUTR,10,128200157,128200206,128200157,128200158,50,+,CGTGTCTGGGATCCAGGTGTGTGAGCAGCAACATTGTGCTCCTGACCCAG,3' UTR,10,128194457,128209939,15483,1,Gls2-201,5700,Gls2-201;Gls2-202;Gls2-208;Gls2-203;Gls2-211;Gls2-205;Gls2-210;Gls2-206;Gls2-209;Gls2-207,Gls2;Gls2;Gls2;Gls2;Gls2;Gls2;Gls2;Gls2;Gls2;Gls2,0;5520;0;5435;0;0;5351;-3050;-3477;-3558,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,2,216456,ENSMUSG00000044005,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21227,cg26841886,-0.00000252,0.00000156,-1.616923832,0.10691182,loss,ns,0.00000494,0.00000265,1.864163642,0.063243799,pos,ns,0.001904519,0.000775643,2.455407524,0.014621264,pos,ns,1.83501507,-0.0000703,0.0000267,-2.635305666,0.008828781,neg,ns,0.961351157,Smurf2,Smurf2_threeUTR,11,106869076,106869125,106869076,106869077,50,+,CGAGCAGGACTCTTGCAGATTTCACTTCACTGCCTGCAGACAAGCAGAGC,3' UTR,11,106820066,106920715,100650,2,Smurf2-202,51590,Smurf2-202;Smurf2-204;Smurf2-201;Smurf2-206,Smurf2;Smurf2;Smurf2;Smurf2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,4,66313,ENSMUSG00000018363,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2483,cg15060270,-0.00000501,0.00000138,-3.637769456,0.000321998,loss,ns,0.00000436,0.00000234,1.86415954,0.063244377,pos,ns,0.000464281,0.000684939,0.677843144,0.498376756,pos,ns,0.302442221,-0.0000225,0.0000236,-0.95722505,0.339199581,neg,ns,0.032725044,Spred2,Spred2_fiveUTR,11,19924343,19924392,19924391,19924392,50,-,GCAAGTAGGAAGCTTTTTGCACTCCACCACCTCTGGCCGCTGGGAAGACG,Promoter (<=1kb),11,19924375,20024026,99652,1,Spred2-202,0,Spred2-202;Spred2-201,Spred2;Spred2,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,8,13,114716,ENSMUSG00000045671,conserved gene and region,11,19924342,19924793,452,*,452,44,0.703539823,0.817763158,0.097345133,3.79E-33,CpGisland,TRUE,U1,Pr-A
4179,cg12875040,-0.00000346,0.00000137,-2.534503398,0.011752505,loss,ns,0.00000433,0.00000232,1.864112572,0.063250993,pos,ns,0.000166452,0.000680127,0.244735887,0.806822855,pos,ns,0.093221808,-0.0000239,0.0000234,-1.021501686,0.307813307,neg,ns,0.966597662,Vldlr,Vldlr_threeUTR,19,27241277,27241326,27241277,27241278,50,+,CGACAATGTCTATAATCCTGCAGCCATTGCTGTTGATTGGGTGTACAAGA,3' UTR,19,27216484,27249755,33272,1,Vldlr-204,24793,Vldlr-204;Vldlr-208;Vldlr-202;Vldlr-207;Vldlr-201;Vldlr-206,Vldlr;Vldlr;Vldlr;Vldlr;Vldlr;Vldlr,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,4,22359,ENSMUSG00000024924,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10872,cg16288687,-0.000114388,0.0000145,-7.904713619,4.75E-14,loss,yes,0.0000458,0.0000246,1.8639488,0.063274066,pos,ns,-0.012798946,0.007202279,-1.777068936,0.076537377,neg,ns,1.116126424,0.000400044,0.000247686,1.61512731,0.107300406,pos,ns,0.793911307,Neurod6,Neurod6_Intergenic_upstream,6,55700704,55700753,55700704,55700705,50,+,CGTTAATTTGAAAGTGCTGTGGTCTAGTGTTAATCGCTATTAAACCTTAG,Distal Intergenic,6,55677822,55681263,3442,2,Neurod6-201,-19441,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,16,11922,ENSMUSG00000037984,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15557,cg17990937,0.0000062,0.0000028,2.216475081,0.027384644,gain,ns,-0.00000886,0.00000475,-1.863893395,0.063281873,neg,ns,-0.003502624,0.001392077,-2.516114085,0.012370562,neg,ns,1.90761057,0.000127571,0.0000479,2.664760439,0.008107616,pos,ns,0.930640857,Adgrl3,Adgrl3_Exon,5,81787478,81787527,81787478,81787479,50,+,CGCATGGTACTAACAATCCCTATAATACATTGCTTGGGGAACCGGCGGTC,"Exon (Adgrl3-203/Adgrl3, exon 26 of 27)",5,81020571,81796634,776064,1,Adgrl3-223,766907,Adgrl3-223;Adgrl3-203;Adgrl3-211;Adgrl3-217;Adgrl3-232;Adgrl3-207;Adgrl3-205;Adgrl3-206;Adgrl3-208;Adgrl3-212;Adgrl3-213;Adgrl3-214;Adgrl3-215;Adgrl3-216;Adgrl3-209;Adgrl3-218;Adgrl3-219;Adgrl3-204;Adgrl3-210;Adgrl3-201;Adgrl3-202;Adgrl3-220;Adgrl3-229;Adgrl3-235,Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,13,319387,ENSMUSG00000037605,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25175,cg12544888,0.000124894,0.0000158,7.90789582,4.65E-14,gain,yes,-0.00005,0.0000268,-1.863745425,0.063302728,neg,ns,0.040230023,0.007860632,5.117912228,0.000000543,pos,ns,6.265227915,-0.001260723,0.000270326,-4.663705617,0.00000462,neg,ns,0.413670342,Wdtc1,Wdtc1_Exon,4,133303582,133303631,133303630,133303631,50,-,GTGCCATTGGGGCTGAAGGTCACATAGGTGGCAACCAGCACTCTCAAACG,"Exon (Wdtc1-201/Wdtc1, exon 9 of 16)",4,133292459,133339324,46866,2,Wdtc1-201,35693,Wdtc1-201;Wdtc1-202,Wdtc1;Wdtc1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,3,230796,ENSMUSG00000037622,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2486,cg03603326,0.00000182,0.00000335,0.541435603,0.588596268,gain,ns,0.0000106,0.0000057,1.863698528,0.063309339,pos,ns,0.004218816,0.001669099,2.527600341,0.011981211,pos,ns,1.921499271,-0.000171867,0.0000574,-2.994188556,0.002973323,neg,ns,0.039015304,Spred2,Spred2_fiveUTR,11,19924901,19924950,19924901,19924902,50,-,CGCGGGACAGGCGTCTAGGTGAACAAGAAAATGACCGAAGAAACACACCC,Promoter (<=1kb),11,19924375,20024026,99652,1,Spred2-202,526,Spred2-202;Spred2-201,Spred2;Spred2,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,8,13,114716,ENSMUSG00000045671,conserved gene and region,11,19924842,19925248,407,*,407,39,0.683046683,0.873823287,0.095823096,3.68E-29,CpGisland,TRUE,U1,Pr-A
14652,cg18445571,-0.00000354,0.00000256,-1.383888123,0.167388272,loss,ns,0.00000809,0.00000434,1.86364112,0.063317432,pos,ns,0.00362446,0.001271795,2.849877422,0.004666542,pos,ns,2.331004858,-0.0000858,0.0000437,-1.961378673,0.050729656,neg,ns,0.110984889,Hopx,Hopx_Exon,5,77094926,77094975,77094926,77094927,50,+,CGGGTGCTTGTCGACCTTGTTGAAGTTGTACTCCAGGATTTCCACCTGGT,Promoter (<=1kb),5,77086988,77095253,8266,2,Hopx-203,278,Hopx-203;Hopx-202;Hopx-201,Hopx;Hopx;Hopx,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,74318,ENSMUSG00000059325,conserved gene and region,5,77094757,77094927,171,*,171,16,0.660818714,0.868571429,0.093567252,4.74E-12,CpGisland,TRUE,U2,Pr-W
19022,cg27018912,0.0000248,0.00000407,6.089242494,3.35E-09,gain,yes,-0.0000129,0.00000692,-1.863328787,0.06336148,neg,ns,0.001075978,0.002025995,0.53108644,0.595739174,pos,ns,0.224943841,-0.0000344,0.0000697,-0.493452033,0.62204262,neg,ns,0.080395646,Prdm8,Prdm8_Intron,5,98180818,98180867,98180818,98180819,50,-,CGTCATTGGGCAGATTATGTGCAGCAAACAAAAAGTGTGTGTCTGCGTGC,"Intron (Prdm8-202/Prdm8, intron 1 of 4)",5,98167198,98187454,20257,1,Prdm8-202,13620,Prdm8-202;Prdm8-201,Prdm8;Prdm8,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,10,77630,ENSMUSG00000035456,conserved gene and region,5,98180684,98180819,136,*,136,10,0.632352941,0.777587193,0.073529412,0.00000115,CpGisland,TRUE,U13,Hc-P
20379,cg00187380,0.0000976,0.00000833,11.71261447,1.76E-26,gain,yes,-0.0000264,0.0000142,-1.863300434,0.06336548,neg,ns,0.000171974,0.004146422,0.041475262,0.966943714,pos,ns,0.014598806,0.000217536,0.000142595,1.525547546,0.128142138,pos,ns,0.217636915,Hoxc5,Hoxc5_Exon,15,103014511,103014560,103014559,103014560,50,+,ATGACCAAACTGCACATGAGCCACGGTAAACTTTAGGACTTCATTTTGCG,"Exon (Hoxc5-201/Hoxc5, exon 1 of 2)",15,102967443,103015676,48234,1,Hoxc5-202,47068,Hoxc4-202;Hoxc5-202;Hoxc5-201;Hoxc6-202;Hoxc6-203;Hoxc6-201,Hoxc4;Hoxc5;Hoxc5;Hoxc6;Hoxc6;Hoxc6,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,72,134,15424,ENSMUSG00000022485,mapped to different genes,15,103014167,103014734,568,*,568,41,0.588028169,0.835773758,0.072183099,1.73E-25,CpGisland,TRUE,U13,Hc-P
6623,cg16702516,0.0000291,0.00000367,7.912417546,4.51E-14,gain,yes,-0.0000116,0.00000624,-1.863066266,0.063398522,neg,ns,0.000840773,0.001828429,0.459833632,0.645957969,pos,ns,0.18979574,0.0000212,0.0000629,0.336830093,0.736472902,pos,ns,0.930716126,Dennd1a,Dennd1a_Intron,2,37832377,37832426,37832425,37832426,50,-,ACATTTTTATTCATGGTGGCGTACGCCCTTGTAATGATCAGCTCTGGTCG,"Intron (Dennd1a-201/Dennd1a, intron 19 of 21)",2,37798991,38287375,488385,2,Dennd1a-201,454949,Dennd1a-201;Dennd1a-206;Dennd1a-207,Dennd1a;Dennd1a;Dennd1a,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,46,227801,ENSMUSG00000035392,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12422,cg14294721,-0.00000227,0.00000119,-1.897944083,0.058632233,loss,ns,0.00000378,0.00000203,1.862404643,0.063491958,pos,ns,0.001917927,0.000594759,3.224712632,0.001395504,pos,ns,2.855268946,-0.0000513,0.0000205,-2.508609885,0.012630976,neg,ns,0.964326202,Asap1,Asap1_Exon,15,64129169,64129218,64129217,64129218,50,-,ACCAAGAGTTCAGAAGTTCCTAATTTGTCTAGTTCCAAAGACTGAATGCG,"Exon (Asap1-217/Asap1, exon 15 of 28)",15,64086857,64312673,225817,2,Asap1-217,183455,Asap1-217;Asap1-216;Asap1-218;Asap1-205;Asap1-206;Asap1-201;Asap1-202;Asap1-203;Asap1-210;Asap1-208;Asap1-215,Asap1;Asap1;Asap1;Asap1;Asap1;Asap1;Asap1;Asap1;Asap1;Asap1;Asap1,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,13196,ENSMUSG00000022377,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8129,cg07986857,0.0000775,0.00000682,11.35710881,3.16E-25,gain,yes,-0.0000216,0.0000116,-1.862386405,0.063494535,neg,ns,0.005548875,0.003395331,1.634266004,0.103218078,pos,ns,0.986244234,0.0000503,0.000116765,0.430760489,0.666941881,pos,ns,0.341050171,Pax2,Pax2_Exon,19,44760949,44760998,44760949,44760950,50,+,CGCATCGTGGAGCTGGCCCACCAGGGTGTGCGGCCCTGTGACATCTCCCG,"Exon (Pax2-203/Pax2, exon 2 of 10)",19,44756045,44837851,81807,1,Pax2-203,4904,Pax2-203;Pax2-201;Pax2-202,Pax2;Pax2;Pax2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,16,166,18504,ENSMUSG00000004231,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
10245,cg08549024,-0.00000418,0.00000355,-1.177680899,0.239827163,loss,ns,0.0000112,0.00000603,1.86237381,0.063496315,pos,ns,0.003498856,0.001767203,1.979883087,0.048600777,pos,ns,1.313356791,-0.000128619,0.0000608,-2.116348527,0.035111898,neg,ns,0.931189527,Alcam,Alcam_Exon,16,52268811,52268860,52268811,52268812,50,+,CGTGTTCTGGAATACTTACTGAAATGAAAAATGTTAATATGAAATTAAAA,"Exon (Alcam-201/Alcam, exon 13 of 16)",16,52248996,52454074,205079,2,Alcam-201,185214,Alcam-201;Alcam-205;Alcam-207;Alcam-202;Alcam-204;Alcam-203,Alcam;Alcam;Alcam;Alcam;Alcam;Alcam,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,3,11658,ENSMUSG00000022636,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15276,cg25383995,0.000059,0.0000128,4.604398302,0.00000604,gain,ns,-0.0000405,0.0000218,-1.862354057,0.063499107,neg,ns,0.009535548,0.006374039,1.495997784,0.135671576,pos,ns,0.867511131,-0.00038784,0.000219203,-1.769319318,0.077823736,neg,ns,0.542182732,Midn,Midn_Exon,10,80153636,80153685,80153636,80153637,50,-,CGGAAATACAGATTCATTTTATTTAAGCGTCCGTGGCACCGACAGGGACC,"Exon (Midn-201/Midn, exon 5 of 9)",10,80148272,80158367,10096,1,Midn-202,5364,Midn-202;Midn-201;Midn-206;Midn-203;Midn-207;Midn-205;Midn-204,Midn;Midn;Midn;Midn;Midn;Midn;Midn,0;0;4524;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,59090,ENSMUSG00000035621,conserved gene and region,10,80153561,80153782,222,*,222,15,0.662162162,0.617810761,0.067567568,2.83E-09,CpGisland,TRUE,U6,En-Sp
10411,cg06064016,-0.000017,0.00000545,-3.122091328,0.001965029,loss,ns,0.0000172,0.00000926,1.862327813,0.063502816,pos,ns,0.004935674,0.002713547,1.8189012,0.069891218,pos,ns,1.15557739,-0.0002295,0.0000933,-2.459311912,0.014466278,neg,ns,0.907613394,Npas3,Npas3_Intron,12,53400015,53400064,53400063,53400064,50,+,CTTTTTTAGGGTCACTAAAATTCCAATAATTCAGTCTAGAATTGAAGTCG,"Intron (Npas3-204/Npas3, intron 1 of 10)",12,53248157,54069532,821376,1,Npas3-204,151858,Npas3-204;Npas3-201;Npas3-202;Npas3-203,Npas3;Npas3;Npas3;Npas3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,83,103,27386,ENSMUSG00000021010,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5916,cg01110553,0.000026,0.0000103,2.512113467,0.012508792,gain,ns,0.0000327,0.0000176,1.862205978,0.063520037,pos,ns,-0.003414272,0.005145802,-0.663506407,0.50749939,neg,ns,0.294564476,0.000275094,0.000176964,1.554520205,0.121080669,pos,ns,0.814247701,Ddx39b,Ddx39b_Exon,17,35248959,35249008,35248959,35248960,50,+,CGGGATGTCCAGGAAATTTTTCGCATGACCCCCCACGAGAAGCAGGTCAT,"Exon (Ddx39b-201/Ddx39b, exon 6 of 11)",17,35241746,35253707,11962,1,Ddx39b-201,7213,Ddx39b-201;Ddx39b-205;Ddx39b-204;Ddx39b-203;Ddx39b-202,Ddx39b;Ddx39b;Ddx39b;Ddx39b;Ddx39b,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,53817,ENSMUSG00000019432,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1146,cg25691921,0.00000998,0.00001,0.994912929,0.32055456,gain,ns,0.0000317,0.000017,1.862170429,0.063525062,pos,ns,0.018364357,0.004991355,3.67923256,0.000275761,pos,ns,3.559467555,-0.000571611,0.000171652,-3.330054122,0.000973123,neg,ns,0.630565833,Rpl23a-ps13,Rpl23a-ps13_Intergenic_upstream,X,11821997,11822046,11821997,11821998,50,+,CGCCGGCTGCTCCCCATGCCAGGTGCAGCTGCCAGGATTCTCAATGCGGT,Distal Intergenic,20,11867265,11867705,441,1,Rpl23a-ps13-201,-45219,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,13,14,628338,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2059,cg18991750,-0.00000143,0.00000192,-0.747111461,0.455562567,loss,ns,-0.00000606,0.00000326,-1.86211703,0.063532611,neg,ns,-0.003672907,0.000953847,-3.850626474,0.000143138,neg,ns,3.844245658,0.000110181,0.0000328,3.358897492,0.000880233,pos,ns,0.978263674,Cdk13,Cdk13_Exon,13,17765031,17765080,17765079,17765080,50,-,ACGCAGCGTTTTCCCCAGTCAATATCTTTTTCTTTGGTTTCACCATAGCG,"Exon (Cdk13-207/Cdk13, exon 4 of 14)",13,17710315,17805097,94783,2,Cdk13-207,40017,Cdk13-207;Cdk13-201;Cdk13-205;Cdk13-206,Cdk13;Cdk13;Cdk13;Cdk13,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,6,69562,ENSMUSG00000041297,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17824,cg21518749,0.0000181,0.00000338,5.373988404,0.000000152,gain,yes,-0.0000107,0.00000574,-1.861946351,0.063556746,neg,ns,0.003885116,0.001680419,2.311992692,0.021433201,pos,ns,1.668912958,-0.000136593,0.0000578,-2.363624684,0.018713766,neg,ns,0.077570576,Irx3,Irx3_Exon,8,91872855,91872904,91872855,91872856,50,+,CGAGCTGCCTGGGAGGAGGTATTAATTGTTGTCAGCCTCCATTTCACACC,"Exon (Gm28511-201/Gm28511-201, exon 2 of 2)",8,91798525,91802067,3543,2,Irx3-202,-70788,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,16,36,16373,ENSMUSG00000031734,mapped to different genes,8,91872703,91872933,231,*,231,16,0.632034632,0.698280748,0.069264069,5.08E-10,CpGisland,TRUE,NA,NRS
14734,cg22815082,-0.00000597,0.00000686,-0.871035146,0.384408994,loss,ns,0.0000217,0.0000116,1.861944523,0.063557005,pos,ns,0.001616647,0.003412547,0.473736179,0.636021509,pos,ns,0.196528197,-0.000161377,0.000117357,-1.375092065,0.170095867,neg,ns,0.853331373,2210408I21Rik,2210408I21Rik_Intron,13,77490434,77490483,77490434,77490435,50,-,CGGTTTCCACCCGACAAAATGTTTTATAAGCTTGTAACAATATGTGTGAA,"Intron (2210408I21Rik-201/2210408I21Rik, intron 19 of 19)",13,77135540,77613784,478245,1,2210408I21Rik-201,354894,2210408I21Rik-201,2210408I21Rik,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,19,20,72371,ENSMUSG00000071252,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9282,cg17748999,-0.00000361,0.00000118,-3.06483682,0.002369339,loss,ns,0.00000372,0.000002,1.861809981,0.063576036,pos,ns,0.000746616,0.000585683,1.274779672,0.203341885,pos,ns,0.691773156,-0.00000955,0.0000201,-0.473974406,0.635851808,neg,ns,0.031350287,Zfp282,Zfp282_Exon,6,47877745,47877794,47877793,47877794,50,+,GGAGCTGGGCCCAGGCTCTGCCCCCGGAGGAGGTCTGCCACCAGGAGCCG,Promoter (<=1kb),6,47877204,47908485,31282,1,Zfp282-201,541,Zfp282-201;Zfp282-202;Zfp398-202,Zfp282;Zfp282;Zfp398,0;0;42050,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,5,101095,ENSMUSG00000025821,conserved gene and region,6,47877737,47878156,420,*,420,53,0.778571429,0.843501326,0.126190476,2.05E-46,CpGisland,TRUE,U1,Pr-A
16676,cg10307560,0.0000394,0.00000476,8.284308861,3.62E-15,gain,yes,0.0000151,0.00000809,1.861594506,0.063606524,pos,ns,0.003038711,0.002368767,1.282824035,0.200512026,pos,ns,0.697859576,0.000132609,0.0000815,1.627867632,0.10456883,pos,ns,0.08837248,Celsr1,Celsr1_fiveUTR,15,86033972,86034021,86034020,86034021,50,+,GAGAGCACTTTGCGAAAGTTTGCGAAGTTGGTTTCAAGATGGCTCCTCCG,Promoter (<=1kb),15,85898929,86034203,135275,2,Celsr1-201,182,Celsr1-201,Celsr1,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,1,12614,ENSMUSG00000016028,conserved gene but different region,15,86032988,86034258,1271,*,1271,154,0.743509048,0.879703371,0.121164438,1.21E-130,CpGisland,TRUE,U3,Pr-B
3931,cg03659156,-0.00000788,0.00000352,-2.23636324,0.026039105,loss,ns,-0.0000111,0.00000599,-1.861538827,0.063614404,neg,ns,-0.001050146,0.001754052,-0.598697338,0.549811945,neg,ns,0.259785829,0.000103864,0.0000603,1.721826682,0.086098443,pos,ns,0.929533695,Gm7847,Gm7847_Intergenic_downstream,18,25818841,25818890,25818841,25818842,50,+,CGCAACAAGATAAACTCAGATAGAATAATCTGTGGATATTTAGGCCTCTG,Distal Intergenic,18,25823581,25824357,777,2,Gm7847-201,5467,Gm7847-201,Gm7847,5467,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,22,665916,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1682,cg22941281,-0.0000164,0.00000624,-2.627669749,0.009024902,loss,ns,0.0000197,0.0000106,1.861152362,0.063669122,pos,ns,0.005726871,0.003105401,1.84416491,0.06611318,pos,ns,1.179711956,-0.000228535,0.000106794,-2.139948838,0.033139274,neg,ns,0.60260497,Tle4,Tle4_Exon,19,14453807,14453856,14453807,14453808,50,-,CGGATGTAGTTATCCCTGTTCTGTAGAGACAAAAACCATCAAGAGATTAC,"Exon (Tle4-201/Tle4, exon 16 of 20)",19,14448150,14598051,149902,2,Tle4-201,144195,Tle4-201;Tle4-202,Tle4;Tle4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,29,21888,ENSMUSG00000024642,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
799,cg02437639,-0.00000864,0.00000297,-2.907291927,0.003908677,loss,ns,-0.00000939,0.00000505,-1.861132795,0.063671893,neg,ns,-0.001443051,0.001478754,-0.975856045,0.329896687,neg,ns,0.481622045,-0.0000865,0.0000509,-1.701540185,0.089844248,neg,ns,0.903636085,Sash1,Sash1_Exon,10,8751257,8751306,8751305,8751306,50,-,TTAATCAGGCCCCGGCTCTCTCCTTTGCTGAAGGTTTTGACCAACTTCCG,"Exon (Sash1-201/Sash1, exon 10 of 20)",10,8722219,8886070,163852,2,Sash1-201,134764,Sash1-201;Sash1-203;Sash1-202,Sash1;Sash1;Sash1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,70097,ENSMUSG00000015305,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18722,cg27482084,-0.00002,0.00000607,-3.302726067,0.001069476,loss,ns,-0.0000192,0.0000103,-1.86107116,0.063680624,neg,ns,-0.001173044,0.003021007,-0.388295697,0.698063743,neg,ns,0.156104918,-0.000380066,0.000103892,-3.658269954,0.000298294,neg,ns,0.865369168,Cdk5rap3,Cdk5rap3_Intergenic_downstream,11,96907129,96907178,96907177,96907178,50,-,AATAATGAGTGGTGTCACTCCACTTTTCATTTTGATGGAAAGTCATTACG,Distal Intergenic,11,96907816,96908758,943,2,Cdk5rap3-210,1629,Cdk5rap3-201;Cdk5rap3-205;Cdk5rap3-210;Cdk5rap3-208;Cdk5rap3-202;Cdk5rap3-211;Cdk5rap3-209,Cdk5rap3;Cdk5rap3;Cdk5rap3;Cdk5rap3;Cdk5rap3;Cdk5rap3;Cdk5rap3,9318;9318;1580;5691;9214;8929;9251,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,5,80280,ENSMUSG00000018669,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9496,cg12999303,0.0000964,0.00002,4.827160019,0.00000218,gain,ns,-0.0000632,0.0000339,-1.860960705,0.063696272,neg,ns,-0.01131068,0.009943999,-1.137437722,0.256233727,neg,ns,0.591363706,0.000199624,0.000341973,0.583741871,0.559818474,pos,ns,0.568885614,Fam120a,Fam120a_Exon,13,48910300,48910349,48910348,48910349,50,+,TTCTTTCTGCTTTCTGCCAAACTAAACAGGACTCCGTAAACATACTGACG,"Exon (Fam120a-201/Fam120a, exon 10 of 18)",13,48879219,48968017,88799,2,Fam120a-201,57668,Fam120a-201,Fam120a,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,8,218236,ENSMUSG00000038014,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5170,cg03340526,-0.00000848,0.000015,-0.565547698,0.572110387,loss,ns,0.0000474,0.0000255,1.860924027,0.063701469,pos,ns,0.005155322,0.007464877,0.690610517,0.490327092,pos,ns,0.30951411,0.000168938,0.000256716,0.658073164,0.510979506,pos,ns,0.307907816,Prrxl1,Prrxl1_Promoter,14,32598632,32598681,32598680,32598681,50,-,CGTAACGGGCTATTATCCTGGTGTAATGCTATTACAGAACCAATTATGCG,Promoter (<=1kb),14,32599407,32649204,49798,1,Prrxl1-203,-775,Prrxl1-203;Prrxl1-204;Prrxl1-202;Prrxl1-201;Prrxl1-205,Prrxl1;Prrxl1;Prrxl1;Prrxl1;Prrxl1,0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,14,23,107751,ENSMUSG00000041730,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
7951,cg04568616,0.000124765,0.0000179,6.955768243,2.09E-11,gain,yes,-0.0000567,0.0000305,-1.860630793,0.06374303,neg,ns,-0.004256005,0.008927354,-0.476737546,0.633884896,neg,ns,0.197989596,-0.000257534,0.000307011,-0.838843361,0.40220358,neg,ns,0.167865107,Pax5,Pax5_Exon,4,44664497,44664546,44664545,44664546,50,+,TAGTTTTATCTCGGAACGTCAATTGACTTAGACTGATTGGCTTCCTGCCG,"Exon (Gm12462-201/Gm12462-201, exon 1 of 2)",4,44524757,44710487,185731,2,Pax5-201,45941,Pax5-201;Pax5-202;Pax5-203;Pax5-204;Pax5-205;Pax5-207;Pax5-206;Pax5-209;Pax5-210;Pax5-212;Pax5-213;Pax5-214;Pax5-215;Pax5-211,Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,45,18507,ENSMUSG00000014030,conserved gene but different region,4,44664291,44664745,455,*,455,56,0.692307692,1.027419355,0.123076923,2.55E-48,CpGisland,TRUE,U3,Pr-B
8824,cg16473663,-0.0000111,0.0000041,-2.714040862,0.007018777,loss,ns,-0.000013,0.00000697,-1.860530351,0.063757272,neg,ns,-0.002184569,0.002042302,-1.069660172,0.285604457,neg,ns,0.54423502,-0.0000585,0.0000702,-0.832985391,0.405494265,neg,ns,0.954128078,Vegfa,Vegfa_Intergenic_downstream,17,45897606,45897655,45897654,45897655,50,-,AAATACCAGGTATTTAGGTGGCTTTCTTGGAACCTGGCATTAGGGACACG,Distal Intergenic,17,46018712,46021372,2661,2,Vegfa-208,123766,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,7,22339,ENSMUSG00000023951,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
344,cg08928882,0.0000216,0.00000296,7.308876537,2.30E-12,gain,yes,-0.00000936,0.00000503,-1.860518652,0.063758931,neg,ns,0.004735853,0.001473769,3.213429704,0.001449643,pos,ns,2.838738895,-0.000131942,0.0000507,-2.603283077,0.009677691,neg,ns,0.043562678,Zfhx4,Zfhx4_Promoter,3,5218440,5218489,5218440,5218441,50,+,CGTCATTTGCAGTCTGGGGAATGTTGATCACCTCACTAATTACACCTCTC,Promoter (<=1kb),3,5218526,5413165,194640,1,Zfhx4-203,-37,Zfhx4-203;Zfhx4-202;Zfhx4-201;Zfhx4-204,Zfhx4;Zfhx4;Zfhx4;Zfhx4,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,10,77,80892,ENSMUSG00000025255,mapped to different genes,3,5218273,5218441,169,*,169,14,0.650887574,0.784482759,0.082840237,7.36E-10,CpGisland,TRUE,U1,Pr-A
6814,cg15234261,0.0000788,0.0000121,6.496518477,3.27E-10,gain,yes,-0.0000383,0.0000206,-1.860487207,0.06376339,neg,ns,0.012503284,0.006034213,2.072065482,0.039085875,pos,ns,1.407980159,-0.000628787,0.000207516,-3.03006267,0.002650912,neg,ns,0.602172352,Spry4,Spry4_Intron,18,38592470,38592519,38592470,38592471,50,-,CGGAAACTGCTTGGTTCAAATTTAGAAAGTGCACATTGTTTTCTATTAGA,"Intron (Spry4-201/Spry4, intron 1 of 1)",18,38586247,38601415,15169,2,Spry4-201,8896,Spry4-201,Spry4,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,4,24066,ENSMUSG00000024427,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
4258,cg11072501,0.00000124,0.00000163,0.756606825,0.449860067,gain,ns,-0.00000517,0.00000278,-1.860320918,0.063786975,neg,ns,-0.000853831,0.000813538,-1.049528848,0.294752295,neg,ns,0.530542804,0.0000351,0.000028,1.254656851,0.210548459,pos,ns,0.961883737,Rfx3,Rfx3_Intron,19,27988838,27988887,27988886,27988887,50,+,CTTTATTATTACATCCGGCCTGGTCACTCTTAGAAATTCAATCTATTACG,"Intron (Rfx3-201/Rfx3, intron 1 of 15)",19,27761727,28011048,249322,2,Rfx3-201,22161,Rfx3-201;Rfx3-208;Rfx3-204;Rfx3-205;Rfx3-207,Rfx3;Rfx3;Rfx3;Rfx3;Rfx3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,15,19726,ENSMUSG00000040929,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24255,cg20996132,0.00000814,0.00000886,0.918434648,0.359105389,gain,ns,0.000028,0.000015,1.860249994,0.063797036,pos,ns,0.002011798,0.004408856,0.456308309,0.648487811,pos,ns,0.188098183,-0.0000585,0.00015162,-0.385527589,0.700110982,neg,ns,0.785186318,Pou3f1,Pou3f1_Intergenic_upstream,4,124360432,124360481,124360432,124360433,50,+,CGTCAATGGTAATTTGAATAAGAAAAGACATGTTAAGTGGTTCTTCTCTC,Distal Intergenic,4,124656807,124660655,3849,1,Pou3f1-201,-296326,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,24,85,18991,ENSMUSG00000090125,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24613,cg02382880,-0.0000235,0.0000108,-2.167294584,0.030973489,loss,ns,-0.0000342,0.0000184,-1.860247218,0.06379743,neg,ns,0.00677056,0.00538936,1.256282763,0.209959366,pos,ns,0.677864747,-0.000148851,0.00018534,-0.803127272,0.422516514,neg,ns,0.948786402,Kif5a,Kif5a_Exon,10,127231443,127231492,127231443,127231444,50,-,CGTAGCCCTAAGTCGTTTTTCCAATTTAGGAAGCTCACAACGCAGATCTG,"Exon (Kif5a-201/Kif5a, exon 24 of 29)",10,127225696,127263348,37653,2,Kif5a-201,31856,Kif5a-201;Kif5a-202,Kif5a;Kif5a,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,8,16572,ENSMUSG00000074657,conserved gene and region,10,127231443,127231578,136,*,136,10,0.551470588,0.967283073,0.073529412,0.00000115,CpGisland,TRUE,NA,NRS
1081,cg19317080,-0.0000468,0.00000907,-5.164863967,0.000000431,loss,yes,0.0000286,0.0000154,1.860117365,0.063815855,pos,ns,-0.005847078,0.004511788,-1.295955829,0.195954741,neg,ns,0.707844224,0.000480855,0.00015516,3.099093736,0.002119103,pos,ns,0.903091378,Gm14515,Gm14515_Intergenic_upstream,X,11525476,11525525,11525476,11525477,50,+,CGGCTCTGTGAATAAGCATATAAATTTCTATGACATTTTTGGAGGCTTGC,Distal Intergenic,20,11601354,11601569,216,1,Gm14515-201,-75829,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,21,28,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14080,cg05690769,0.0000133,0.0000214,0.619612496,0.53596807,gain,ns,0.0000677,0.0000364,1.859952274,0.063839286,pos,ns,0.004336987,0.010670248,0.406456093,0.684687965,pos,ns,0.164507306,0.000498589,0.000366949,1.358742708,0.175215939,pos,ns,0.256722958,Evx2,Evx2_Intergenic_downstream,2,74651400,74651449,74651400,74651401,50,+,CGATGAATGTCAGTAAATGTAGTTTTCATGTCGTTTCTATAAAATCTTCA,Downstream (1-2kb),2,74655616,74659419,3804,2,Evx2-202,7970,Evx2-201;Evx2-202,Evx2;Evx2,0;7970,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,17,35,14029,ENSMUSG00000001815,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
1184,cg09572920,0.0000186,0.0000066,2.81528885,0.00518534,gain,ns,0.0000208,0.0000112,1.859272364,0.06393586,pos,ns,0.013733791,0.003285009,4.180747474,0.0000378,pos,ns,4.421963782,-0.000413967,0.000112971,-3.664360213,0.000291575,neg,ns,0.60416767,Gm14512,Gm14512_Intergenic_downstream,X,12000431,12000480,12000431,12000432,50,-,CGGGTAATTGGGTTTGCTCGAGTTGCCTCTATAATTAATAAGTGATTTGA,Distal Intergenic,20,11984468,11984697,230,1,Gm14512-201,16012,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,22,22,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10011,cg05204259,0.0000146,0.00000515,2.835508044,0.00487605,gain,ns,-0.0000163,0.00000875,-1.859147058,0.063953672,neg,ns,0.010984848,0.002563635,4.284872332,0.0000244,pos,ns,4.612067647,-0.000443515,0.0000882,-5.030614091,0.000000829,neg,yes,0.116326969,Skap2,Skap2_Intergenic_downstream,6,51849196,51849245,51849244,51849245,50,+,TGGGGTACTTTGGAGACCAATTTGTTTAGCTGATCACTGTCTCTTTGACG,Distal Intergenic,6,51859104,51871929,12826,2,Skap2-207,22684,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,19,54353,ENSMUSG00000059182,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14514,cg27286727,-0.00000318,0.00000197,-1.610291446,0.108351988,loss,ns,0.00000624,0.00000335,1.859030904,0.063970186,pos,ns,0.00146293,0.000982676,1.488721682,0.137577244,pos,ns,0.861453393,-0.0000711,0.0000338,-2.104141654,0.036171152,neg,ns,0.965008229,Ptprd,Ptprd_Intron,4,76137037,76137086,76137037,76137038,50,-,CGATTCAATCTCTTGCTAAGTTGCACAGACAGAAAATGATGCGATGAGAA,"Intron (Ptprd-206/Ptprd, intron 7 of 35)",4,75941238,76449980,508743,2,Ptprd-206,312894,Ptprd-206;Ptprd-204;Ptprd-213;Ptprd-220;Ptprd-203;Ptprd-217;Ptprd-218;Ptprd-219;Ptprd-201;Ptprd-221;Ptprd-205;Ptprd-202,Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd,0;0;0;0;0;0;0;0;0;-2894;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,32,19266,ENSMUSG00000028399,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20851,cg08249359,-0.00000346,0.00000258,-1.340747006,0.180984237,loss,ns,-0.00000815,0.00000439,-1.859020758,0.063971629,neg,ns,0.000688905,0.001284913,0.536148691,0.592240286,pos,ns,0.227502054,-0.000062,0.0000442,-1.403408946,0.161495789,neg,ns,0.920679979,Ctcf,Ctcf_Exon,8,105664903,105664952,105664903,105664904,50,-,CGGCGTTCAAATTTGGATCGTCACATGAAAAGCCACACTGATGAGAGACC,"Exon (Ctcf-201/Ctcf, exon 4 of 12)",8,105636568,105681647,45080,1,Ctcf-204,28335,Ctcf-204;Ctcf-201;Ctcf-202;Ctcf-203;Gm5915-201,Ctcf;Ctcf;Ctcf;Ctcf;Gm5915,0;0;0;0;-4116,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,8,13018,ENSMUSG00000005698,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6335,cg05539466,-0.00000423,0.00000202,-2.089172987,0.037507319,loss,ns,-0.00000639,0.00000344,-1.858933924,0.063983977,neg,ns,-0.002419073,0.001007361,-2.401395681,0.016921221,neg,ns,1.771568303,0.000076,0.0000346,2.194102619,0.028969916,pos,ns,0.962756078,Pknox2,Pknox2_Intron,9,36933243,36933292,36933291,36933292,50,-,TAAAAAATTTACACATAAAAAAATTCCATGCATGAAACTGAAACCGTACG,"Intron (Pknox2-207/Pknox2, intron 4 of 10)",9,36890982,37083309,192328,2,Pknox2-207,150017,Pknox2-207;Pknox2-201;Pknox2-202;Pknox2-203;Pknox2-206;Pknox2-204;Pknox2-205;Pknox2-208;Pknox2-210;Pknox2-209,Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,47,208076,ENSMUSG00000035934,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24943,cg16122796,0.0000308,0.00000885,3.483417341,0.000566299,gain,ns,0.000028,0.000015,1.85880751,0.064001958,pos,ns,0.009166283,0.00440643,2.080206046,0.038327789,pos,ns,1.416486235,-0.000176671,0.000151537,-1.165864762,0.244565333,neg,ns,0.871663016,Col16a1,Col16a1_Exon,4,130073058,130073107,130073106,130073107,50,+,CTCCCACCCAGGGTGCTCCGGGACTTTGGATGGGCAGCTCCTGGCAGCCG,"Exon (Col16a1-201/Col16a1, exon 41 of 70)",4,130047840,130099277,51438,1,Col16a1-201,25218,Col16a1-201;Col16a1-202;Col16a1-203;Col16a1-209;Col16a1-210;Col16a1-211;Col16a1-212,Col16a1;Col16a1;Col16a1;Col16a1;Col16a1;Col16a1;Col16a1,0;0;0;0;0;0;-3936,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,2,107581,ENSMUSG00000040690,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3133,cg02094891,-0.00000362,0.00000188,-1.928973054,0.054646892,loss,ns,0.00000593,0.00000319,1.858790342,0.0640044,pos,ns,0.002609078,0.000934436,2.792143084,0.00556119,pos,ns,2.254832279,-0.0000774,0.0000321,-2.409497592,0.016557057,neg,ns,0.950704493,Kat6a,Kat6a_Exon,8,22926415,22926464,22926463,22926464,50,+,AATGATTCTTCCTCAATACCAGCGTAAGGGCTATGGCAGGTTTCTCATCG,"Exon (Kat6a-202/Kat6a, exon 12 of 17)",8,22859535,22943259,83725,1,Kat6a-202,66880,Kat6a-202;Kat6a-204;Kat6a-201;Kat6a-203,Kat6a;Kat6a;Kat6a;Kat6a,0;0;0;12629,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,6,244349,ENSMUSG00000031540,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17567,cg23564585,-4.25E-08,0.000000897,-0.047388501,0.962234108,loss,ns,-0.00000283,0.00000152,-1.858270433,0.064078395,neg,ns,-0.00069565,0.000446448,-1.558189447,0.120208626,neg,ns,0.920064366,0.0000137,0.0000154,0.889958328,0.374178383,pos,ns,0.974302267,Paxbp1,Paxbp1_Exon,16,91034114,91034163,91034162,91034163,50,-,TCAAGCAAGTCTTGGACATACCCTCGCATTTCTTGCAAAAATTTATACCG,"Exon (Paxbp1-202/Paxbp1, exon 7 of 18)",16,91014037,91044543,30507,2,Paxbp1-202,10380,Paxbp1-202;Paxbp1-201;Paxbp1-207;Paxbp1-206;Paxbp1-203;Paxbp1-204,Paxbp1;Paxbp1;Paxbp1;Paxbp1;Paxbp1;Paxbp1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,7,67367,ENSMUSG00000022974,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13533,cg03843323,0.0000227,0.00000556,4.075547106,0.0000584,gain,ns,-0.0000176,0.00000945,-1.858246302,0.064081831,neg,ns,0.000592346,0.002769375,0.213891714,0.830772115,pos,ns,0.080518089,-0.000147018,0.0000952,-1.543684352,0.123684998,neg,ns,0.902724104,Gm10172,Gm10172_Intergenic_downstream,7,71190414,71190463,71190414,71190415,50,-,CGTTGAAACTACCATTTAATGGGTCCTGGAAGATTAGGGTAGTGTCAGCC,Distal Intergenic,7,71332363,71332921,559,2,Gm10172-201,142507,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,31,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20216,cg20806387,0.0000755,0.00000834,9.053128065,1.58E-17,gain,yes,-0.0000263,0.0000142,-1.857901441,0.064130954,neg,ns,0.00107937,0.004150687,0.260046035,0.795000895,pos,ns,0.099632383,0.0000924,0.000142742,0.647535782,0.517764486,pos,ns,0.161330838,Hoxc11,Hoxc11_Promoter,15,102954251,102954300,102954251,102954252,50,-,CGAGAGAAAAACGAATACAAATCTGCAATTGATTTTCATAATGTTTCTGC,Promoter (<=1kb),15,102954427,102957708,3282,1,Hoxc11-201,-176,Hoxc11-201,Hoxc11,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,12,24,109663,ENSMUSG00000001656,mapped to different genes,15,102954221,102954599,379,*,379,28,0.519788918,1.094020619,0.073878628,6.96E-18,CpGisland,TRUE,U13,Hc-P
6265,cg01150223,0.0000491,0.00000518,9.468755777,7.50E-19,gain,yes,-0.0000164,0.00000881,-1.857802225,0.064145092,neg,ns,0.008206402,0.002580425,3.180252068,0.001620315,pos,ns,2.790400539,-0.000249546,0.0000887,-2.812087251,0.005235916,neg,ns,0.077440203,Tenm2,Tenm2_Intron,11,36678163,36678212,36678211,36678212,50,-,AGAATAAAGCCACAGTGCAGTGTCTGGCAGCTTCTGTTTTTATCTCAGCG,"Intron (Tenm2-202/Tenm2, intron 4 of 30)",11,36006656,37235882,1229227,2,Tenm2-202,557670,Tenm2-202;Tenm2-208;Tenm2-201;Tenm2-204;Tenm2-205,Tenm2;Tenm2;Tenm2;Tenm2;Tenm2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,47,84,23964,ENSMUSG00000049336,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
1964,cg17781858,0.0000163,0.0000072,2.266510384,0.024109051,gain,ns,0.0000227,0.0000122,1.857698356,0.064159897,pos,ns,-0.002393871,0.00358586,-0.66758624,0.504894406,neg,ns,0.296799441,0.00016324,0.000123317,1.32373616,0.186566003,pos,ns,0.722744487,Gm7537,Gm7537_Promoter,13,16642674,16642723,16642722,16642723,50,-,CCTGATGGCAATTAGTCCCTTGTAGGTGCTAATGAATAAAACGCAGCACG,Promoter (3-4kb),13,16638077,16639490,1414,2,Gm7537-201,-3233,Gm7537-201,Gm7537,-3184,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,6,665191,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17157,cg07473509,-0.00000339,0.0000153,-0.22163604,0.824743151,loss,ns,0.0000483,0.000026,1.857614257,0.064171885,pos,ns,0.004802381,0.007614756,0.630667774,0.528722429,pos,ns,0.276772266,0.0000712,0.000261871,0.27193795,0.785850752,pos,ns,0.630694706,Nrxn3,Nrxn3_Intron,12,88900382,88900431,88900430,88900431,50,+,TCAGAGATAAAATATCAAGCTAATAACAGACTCCCTGCTAATGTAAATCG,"Intron (Nrxn3-209/Nrxn3, intron 4 of 7)",12,88722876,89261571,538696,1,Nrxn3-209,177506,Nrxn3-209;Nrxn3-213;Nrxn3-208;Nrxn3-205,Nrxn3;Nrxn3;Nrxn3;Nrxn3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,39,18191,ENSMUSG00000066392,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3571,cg12462250,-0.00000482,0.00000874,-0.551779877,0.58149671,loss,ns,0.0000276,0.0000148,1.857608781,0.064172666,pos,ns,0.001426758,0.004349771,0.328007593,0.743127347,pos,ns,0.128936757,0.00000716,0.000149588,0.047888227,0.961836159,pos,ns,0.520290197,Iqca1l,Iqca1l_Intron,5,24551188,24551237,24551236,24551237,50,-,GCGCAGAGACAATTACTGAAAACGCTGAGCTCACACTGTTGATAGGCCCG,"Intron (Iqca1l-201/Iqca1l, intron 5 of 18)",5,24543432,24555410,11979,2,Iqca1l-201,4173,Iqca1l-201;Iqca1l-205;Iqca1l-204;Iqca1l-203;Iqca1l-202,Iqca1l;Iqca1l;Iqca1l;Iqca1l;Iqca1l,0;0;0;4232;5572,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,4,231045,ENSMUSG00000038199,conserved gene and region,5,24550952,24551241,290,*,290,17,0.582758621,0.703481735,0.05862069,1.75E-09,CpGisland,TRUE,U13,Hc-P
16556,cg09530369,0.0000285,0.000008,3.556575431,0.000434409,gain,ns,-0.0000253,0.0000136,-1.857605023,0.064173202,neg,ns,0.001029294,0.003983476,0.258390983,0.796276642,pos,ns,0.098936024,-0.000128964,0.000136991,-0.941405396,0.347230163,neg,ns,0.227375263,Camkmt,Camkmt_Intron,17,85454597,85454646,85454597,85454598,50,+,CGGCTTTTGTTGGCCGCGTGCTAATAGCCAGGGCTTAAAAGTTTTCCATC,"Intron (Camkmt-201/Camkmt, intron 10 of 10)",17,85090552,85458588,368037,1,Camkmt-201,364045,Camkmt-201,Camkmt,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,41,44,73582,ENSMUSG00000071037,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
17511,cg11571533,-0.00000127,0.00000263,-0.481462059,0.630527822,loss,ns,-0.00000831,0.00000447,-1.857259637,0.064222458,neg,ns,-0.002761624,0.001310142,-2.107881266,0.035843776,neg,ns,1.445586251,0.00004,0.0000451,0.888499514,0.374961002,pos,ns,0.927107472,Iqsec1,Iqsec1_Exon,6,90662924,90662973,90662924,90662925,50,+,CGGCGCATGTGAGGACTGCTAATGATGGACCCCTAAAAAGGAAATTCATA,"Exon (Iqsec1-201/Iqsec1, exon 14 of 14)",6,90656088,90716529,60442,2,Iqsec1-202,53556,Iqsec1-202;Iqsec1-208;Iqsec1-201;Iqsec1-210;Iqsec1-206;Iqsec1-204,Iqsec1;Iqsec1;Iqsec1;Iqsec1;Iqsec1;Iqsec1,0;-636;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,3,232227,ENSMUSG00000034312,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27221,cg14167922,-0.0000188,0.0000106,-1.764979974,0.078551717,loss,ns,0.0000335,0.0000181,1.857103093,0.064244793,pos,ns,0.013952348,0.005292484,2.636256908,0.008804619,pos,ns,2.055289408,-0.000429685,0.000182008,-2.360803577,0.018854118,neg,ns,0.832463321,Rc3h1,Rc3h1_threeUTR,1,160969718,160969767,160969766,160969767,50,-,CAGACCTGGCTGGTCAAGGATTTGATATACACATATTGGCTTGGGATTCG,3' UTR,1,160906418,160974978,68561,1,Rc3h1-202,63300,Rc3h1-202;Rc3h1-204;Rc3h1-201,Rc3h1;Rc3h1;Rc3h1,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,8,381305,ENSMUSG00000040423,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11779,cg00117744,0.0000794,0.0000118,6.746072071,7.45E-11,gain,yes,-0.0000371,0.00002,-1.857092253,0.06424634,neg,ns,0.005501342,0.005854784,0.939631975,0.348137927,pos,ns,0.458248661,-0.000166357,0.000201346,-0.826226843,0.409310861,neg,ns,0.313284318,Cdh23,Cdh23_Intron,10,60593240,60593289,60593240,60593241,50,-,CGACAAGTGAATTGCAGGGCCTTTCACCCTGATAAAATGGATAATTACAT,"Intron (Cdh23-201/Cdh23, intron 5 of 66)",10,60302748,60657333,354586,2,Cdh23-201,64044,Cdh23-201;Cdh23-203;Cdh23-202;Cdh23-204;Cdh23-205;Cdh23-209;Cdh23-210;Cdh23-213,Cdh23;Cdh23;Cdh23;Cdh23;Cdh23;Cdh23;Cdh23;Cdh23,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,14,22295,ENSMUSG00000012819,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24078,cg21849844,0.0000392,0.0000129,3.046545127,0.002513825,gain,ns,0.0000405,0.0000218,1.857048318,0.06425261,pos,ns,0.019955057,0.006396648,3.119611651,0.00198113,pos,ns,2.703086949,-0.000249041,0.00021998,-1.132104734,0.258465335,neg,ns,0.449120604,Zic5,Zic5_Intergenic_downstream,14,122453423,122453472,122453423,122453424,50,+,CGATCCTTGAAAACGGAGTTTAAATGTCACCTCCGCCTTTCTAATGGGCA,Distal Intergenic,14,122459193,122460021,829,2,Zic5-202,6549,Zic5-201,Zic5,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,14,26,65100,ENSMUSG00000041703,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
23439,cg12026817,0.0000211,0.00000339,6.227416445,1.54E-09,gain,yes,-0.0000107,0.00000575,-1.856999061,0.06425964,neg,ns,0.003464974,0.00168533,2.055962253,0.040623224,pos,ns,1.391225616,-0.000100405,0.000058,-1.73236149,0.084203837,neg,ns,0.034376632,Dpyd,Dpyd_Exon,3,118433906,118433955,118433954,118433955,50,+,GCTTAAGAATACGCGTAGTCGAGGAGAGTACCAGCGGCAGGGGGGCAGCG,"Exon (Gm26871-202/Gm26871-202, exon 3 of 3)",3,118562129,119432924,870796,1,Dpyd-201,-128174,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,29,99586,ENSMUSG00000033308,mapped to different genes,3,118433691,118434190,500,*,500,37,0.624,0.795801609,0.074,1.85E-23,CpGisland,TRUE,U3,Pr-B
19597,cg22281063,-0.00000875,0.00000235,-3.7253431,0.00023171,loss,ns,0.00000741,0.00000399,1.856955324,0.064265882,pos,ns,0.002298261,0.0011693,1.965502015,0.050248601,pos,ns,1.298876028,-0.0000921,0.0000402,-2.291361382,0.022612989,neg,ns,0.950158197,Klf12,Klf12_Exon,14,100023096,100023145,100023144,100023145,50,-,GGGGCTCCCCTTTCACATTATTTAGCAACAGGGGAACGGCTTCCATATCG,"Exon (Klf12-205/Klf12, exon 4 of 8)",14,99870632,100284679,414048,2,Klf12-205,261534,Klf12-205;Klf12-201;Klf12-204,Klf12;Klf12;Klf12,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,11,16597,ENSMUSG00000072294,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17080,cg23736979,-0.00000526,0.00000348,-1.511525265,0.131673366,loss,ns,-0.000011,0.00000591,-1.856602745,0.064316225,neg,ns,-0.002048761,0.001731259,-1.183393743,0.237559829,neg,ns,0.624226995,0.0000745,0.0000595,1.250539552,0.212045594,pos,ns,0.914525881,Eefsec,Eefsec_Intron,6,88275041,88275090,88275041,88275042,50,+,CGATGGGGTTCATATAATTTTTACAATTGCTTTGAAATGCTTCAATGGCC,"Intron (Eefsec-201/Eefsec, intron 6 of 6)",6,88257334,88446539,189206,2,Eefsec-201,171449,Eefsec-201;Eefsec-206;Eefsec-202,Eefsec;Eefsec;Eefsec,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,65967,ENSMUSG00000033216,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15988,cg22025998,0.0000424,0.00000583,7.267153872,3.00E-12,gain,yes,-0.0000184,0.0000099,-1.856191257,0.06437502,neg,ns,0.009375593,0.002901713,3.231054431,0.001365902,pos,ns,2.864580331,-0.000126249,0.0000998,-1.265150207,0.206767642,neg,ns,0.889501049,Zadh2,Zadh2_threeUTR,18,84096824,84096873,84096824,84096825,50,+,CGGTAAATAGCTGCCAAATTATGGATCATGCCGAAGTGTCACAACTGCAC,3' UTR,18,84088063,84097528,9466,1,Zadh2-201,8761,Zadh2-201;Zadh2-202,Zadh2;Zadh2,0;8153,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,2,225791,ENSMUSG00000049090,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5545,cg11014690,-0.00000527,0.00000295,-1.784296866,0.075353365,loss,ns,0.00000931,0.00000501,1.856059105,0.064393912,pos,ns,0.002937845,0.001468777,2.000198016,0.046350907,pos,ns,1.333941761,-0.0000984,0.0000505,-1.94804579,0.052311765,neg,ns,0.943695733,Pbx3,Pbx3_Intron,2,34229617,34229666,34229617,34229618,50,+,CGCCAACCTAGTTGTCACTTTCGCTTGACTCATTCTCTATTGAGGAAAAA,"Intron (Pbx3-202/Pbx3, intron 2 of 7)",2,34171457,34372038,200582,2,Pbx3-202,142372,Pbx3-202;Pbx3-201;Pbx3-210;Pbx3-206;Pbx3-207;Pbx3-209;Pbx3-204;Pbx3-205;Pbx3-203,Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,82,18516,ENSMUSG00000038718,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5766,cg09329884,0.0000575,0.0000204,2.814004394,0.005205577,gain,ns,0.0000644,0.0000347,1.856007098,0.064401347,pos,ns,0.015390415,0.010167482,1.513689944,0.131123341,pos,ns,0.882319994,-0.00031899,0.000349659,-0.912290284,0.362324833,neg,ns,0.14758567,Sox2,Sox2_Intron,3,34662022,34662071,34662070,34662071,50,-,AACAATGTAAATCACAATCGCTTTATTATTTAATAACGTCAAACGCTTCG,"Intron (Sox2ot-203/Sox2ot-203, intron 3 of 3)",3,34650405,34652461,2057,1,Sox2-201,11666,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,34,62,20674,ENSMUSG00000074637,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
18787,cg21590845,0.0000179,0.00000323,5.55093542,6.11E-08,gain,yes,-0.0000102,0.00000548,-1.855858234,0.064422636,neg,ns,-0.002240077,0.001606643,-1.394259606,0.164237678,neg,ns,0.784527203,0.0000228,0.0000553,0.413350436,0.679635666,pos,ns,0.922403672,Socs7,Socs7_Exon,11,97376991,97377040,97377039,97377040,50,+,TTCTAGATGATATCAGTGGGACGCTGCCTACATCTGTCCTTGTGGCTCCG,"Exon (Socs7-203/Socs7, exon 4 of 10)",11,97362435,97398542,36108,1,Socs7-203,14556,Socs7-203;Socs7-201;Socs7-202,Socs7;Socs7;Socs7,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,192157,ENSMUSG00000038485,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6682,cg25585869,0.000025,0.00000445,5.613113444,4.41E-08,gain,yes,-0.000014,0.00000755,-1.855746973,0.064438551,neg,ns,-0.006630559,0.002212582,-2.996751246,0.002949151,neg,ns,2.53030306,0.000216337,0.0000761,2.84315858,0.004763462,pos,ns,0.889542807,Gpr156,Gpr156_Exon,16,38005761,38005810,38005809,38005810,50,-,GGGCCCGCTCCAAGCCTATTGTGAACTTCAAAGATGACTTGAAACCCACG,"Exon (Gpr156-201/Gpr156, exon 10 of 10)",16,37916496,38007530,91035,1,Gpr156-201,89265,Gpr156-201,Gpr156,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,239845,ENSMUSG00000046961,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6663,cg08919343,0.000197272,0.0000151,13.06483238,2.24E-31,gain,yes,-0.0000476,0.0000257,-1.85565508,0.064451698,neg,ns,0.005337269,0.007515164,0.710199851,0.478114117,pos,ns,0.320468433,-0.000209092,0.000258446,-0.809036639,0.419114561,neg,ns,0.316202476,Rell2,Rell2_fiveUTR,18,37956368,37956417,37956368,37956369,50,-,CGCCCCCCAGGGCCTCATGTCGGAACCACAGCCTGACCTGGAACCGCCCC,5' UTR,18,37955079,37958545,3467,1,Rell2-203,1289,Fchsd1-204;Fchsd1-201;Hdac3-201;Hdac3-206;Hdac3-205;Rell2-203;Rell2-207;Rell2-211;Rell2-210;Rell2-201;Rell2-212;Rell2-208;Rell2-204;Rell2-202;Rell2-209;Rell2-213;Rell2-215;Rell2-205;Rell2-206;Rell2-214,Fchsd1;Fchsd1;Hdac3;Hdac3;Hdac3;Rell2;Rell2;Rell2;Rell2;Rell2;Rell2;Rell2;Rell2;Rell2;Rell2;Rell2;Rell2;Rell2;Rell2;Rell2,4054;13357;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;-276;-317;-396,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,2,225392,ENSMUSG00000044024,conserved gene and region,18,37956211,37956413,203,*,203,12,0.674876847,0.522522523,0.059113301,0.000000684,CpGisland,TRUE,NA,NRS
2475,cg15004147,0.0000114,0.00000343,3.319091892,0.00101076,gain,ns,0.0000108,0.00000583,1.855515311,0.064471698,pos,ns,0.003533486,0.001706722,2.070335284,0.039248638,pos,ns,1.406175413,-0.0000604,0.0000587,-1.029085447,0.304241775,neg,ns,0.923971625,Gm4849,Gm4849_Intergenic_downstream,1,19826642,19826691,19826690,19826691,50,+,TATCACTTTGATCCCCCTGTGTTCTCTCCAGTCTACACATTGGCCAGTCG,Distal Intergenic,1,19330939,19333184,2246,1,Gm4849-201,495703,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,10,226901,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21967,cg26558476,0.00000868,0.00000321,2.703475877,0.007240426,gain,ns,0.0000101,0.00000545,1.85544531,0.064481717,pos,ns,0.003650385,0.001598016,2.28432359,0.023028216,pos,ns,1.637739701,-0.0000848,0.000055,-1.543818105,0.123652586,neg,ns,0.92231942,Faf1,Faf1_Intron,4,109846542,109846591,109846590,109846591,50,-,TATAGTTAATCACTAAGTAAAACACTACATTTGATAAAGTGTTTCTCACG,"Intron (Faf1-201/Faf1, intron 12 of 18)",4,109676588,109963960,287373,1,Faf1-201,169954,Faf1-201;Faf1-203,Faf1;Faf1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,24,14084,ENSMUSG00000010517,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22515,cg03890326,-0.0000139,0.00000791,-1.751188515,0.080902459,loss,ns,0.0000249,0.0000134,1.855245259,0.064510357,pos,ns,0.004093938,0.003938491,1.039468503,0.299396947,pos,ns,0.523752632,-0.00000596,0.000135444,-0.044026802,0.964911385,neg,ns,0.849578619,Gm13973,Gm13973_Intron,2,114899827,114899876,114899875,114899876,50,+,GCTTAGCTGCTTGCCATTAAAATTGATCTGTACTATCCTTCCGATTGACG,"Intron (Gm13974-201/Gm13974-201, intron 3 of 8)",2,115036419,115037312,894,2,Gm13973-201,137436,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,13,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23277,cg14533614,0.00000259,0.00000366,0.7066057,0.480342301,gain,ns,-0.0000115,0.00000622,-1.85497883,0.064548515,neg,ns,-0.005178378,0.001823245,-2.840198939,0.004806734,neg,ns,2.318149927,0.000143319,0.0000627,2.285748563,0.02294361,pos,ns,0.871373767,Eri3,Eri3_Intron,4,117645287,117645336,117645335,117645336,50,+,GCCCGTCGCAGATGGCTGGCCACTAAGCTAATGGGGCAGCAGCCAAGGCG,"Intron (Eri3-201/Eri3, intron 7 of 8)",4,117550365,117674297,123933,1,Eri3-201,94922,Eri3-201;Eri3-206;Eri3-203,Eri3;Eri3;Eri3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,82,97,140546,ENSMUSG00000033423,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22313,cg26723360,0.000135122,0.00000796,16.9769559,3.64E-46,gain,yes,-0.0000251,0.0000135,-1.854978199,0.064548605,neg,ns,0.012843719,0.003961343,3.242263859,0.001314999,pos,ns,2.881074428,-0.000180198,0.00013623,-1.322742803,0.18689586,neg,ns,0.159153883,Lhfpl4,Lhfpl4_Exon,6,113194073,113194122,113194073,113194074,50,+,CGCTGTCGCCCACCCAGTAGGGCTGGATGAAGACCACCACGTTGATGATG,"Exon (Lhfpl4-201/Lhfpl4, exon 2 of 4)",6,113168090,113195384,27295,2,Lhfpl4-201,1262,Lhfpl4-201;Lhfpl4-202,Lhfpl4;Lhfpl4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,7,269788,ENSMUSG00000042873,conserved gene and region,6,113193884,113194365,482,*,482,42,0.668049793,0.8053467,0.08713693,1.49E-29,CpGisland,TRUE,U13,Hc-P
9389,cg16675686,0.0000287,0.00000662,4.335584191,0.0000197,gain,ns,-0.0000209,0.0000112,-1.854972532,0.064549417,neg,ns,0.004097341,0.003294739,1.243601118,0.214586014,pos,ns,0.668398588,-0.0002158,0.000113306,-1.904583506,0.057759661,neg,ns,0.526442216,Otx2,Otx2_Intron,14,48593451,48593500,48593499,48593500,50,+,GGCTGAGGCCCTGCCACTCAATAATTACCCACTGTCTCATCATAATCCCG,"Intron (Gm49120-201/Gm49120-201, intron 1 of 1)",14,48658916,48661932,3017,2,Otx2-206,68432,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,15,18424,ENSMUSG00000021848,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3290,cg07010334,0.000000963,0.00000373,0.258244782,0.796389364,gain,ns,0.0000117,0.00000633,1.854577838,0.064605981,pos,ns,0.005090265,0.001855448,2.743415506,0.006434326,pos,ns,2.191496971,-0.00015213,0.0000638,-2.384153565,0.017719812,neg,ns,0.907018321,Usp34,Usp34_Exon,11,23474341,23474390,23474341,23474342,50,-,CGAGTTGCAATCAACTGTGAAAAATTTACTGAAACATTAGTTAAGCTGAG,"Exon (Usp34-208/Usp34, exon 75 of 80)",11,23306895,23490560,183666,1,Usp34-208,167446,Usp34-208;Usp34-205;Usp34-202,Usp34;Usp34;Usp34,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,13,14,17847,ENSMUSG00000056342,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18461,cg02128240,-0.00000338,0.00000209,-1.616359111,0.107033848,loss,ns,0.00000658,0.00000355,1.854554592,0.064609314,pos,ns,0.003261089,0.001039265,3.137878873,0.001865314,pos,ns,2.729247978,-0.0000959,0.0000357,-2.682096467,0.007708367,neg,ns,0.958935664,Rprd2,Rprd2_Exon,3,95786297,95786346,95786345,95786346,50,-,TTAGTTGAGATTTTGTTCCTTACTTTGTGATTTCTTCCACTGCTTATTCG,"Exon (Rprd2-201/Rprd2, exon 4 of 11)",3,95760341,95818632,58292,2,Rprd2-205,32286,Rprd2-205;Rprd2-201;Rprd2-202;Rprd2-204,Rprd2;Rprd2;Rprd2;Rprd2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,75137,ENSMUSG00000028106,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15321,cg25927637,-0.000055,0.0000115,-4.779520741,0.00000272,loss,ns,0.0000362,0.0000195,1.854451424,0.064624107,pos,ns,-0.012716179,0.005723087,-2.221909051,0.027011151,neg,ns,1.568456915,0.0000718,0.000196816,0.36488809,0.715443748,pos,ns,0.571442277,Gm46388,Gm46388_Intergenic_upstream,13,80334153,80334202,80334153,80334154,50,-,CGAGATGAAGCAGCCTAAAACATTTGGCACAATGTGCGTCTGGCATACAG,Distal Intergenic,13,80493009,80493484,476,1,Gm46388-201,-158856,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,11,108168047,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
435,cg11763177,0.00000102,0.00000609,0.168099487,0.866614628,gain,ns,-0.0000192,0.0000103,-1.854351407,0.06463845,neg,ns,-0.009113233,0.003028711,-3.008947735,0.002836556,neg,ns,2.547208601,0.000232141,0.000104157,2.228754118,0.026546964,pos,ns,0.842791305,Fam110b,Fam110b_Exon,4,5799496,5799545,5799496,5799497,50,-,CGCAGCGCAAGCATGATCAGCTCAGACTGTGAACAGTCTCAGGACAGTAA,"Exon (Fam110b-201/Fam110b, exon 3 of 3)",4,5644121,5801101,156981,1,Fam110b-201,155375,Fam110b-203;Fam110b-201;Fam110b-205;Fam110b-204;Fam110b-202;Fam110b-208;Fam110b-209;Fam110b-207,Fam110b;Fam110b;Fam110b;Fam110b;Fam110b;Fam110b;Fam110b;Fam110b,155406;0;155306;0;0;26617;0;1412,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,242297,ENSMUSG00000049119,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11777,cg05526228,-0.00000654,0.00000194,-3.374874077,0.000832403,loss,ns,0.0000061,0.00000329,1.854143739,0.06466824,pos,ns,0.000933717,0.000963934,0.968652951,0.333473493,pos,ns,0.476938681,-0.0000126,0.0000331,-0.378961971,0.704975528,neg,ns,0.955249099,Cdh23,Cdh23_Intron,10,60555613,60555662,60555661,60555662,50,+,GAAATGACAAATAAATCTGTAACAGTGGGACCCTTCAAATAATAATCACG,"Intron (Cdh23-201/Cdh23, intron 5 of 66)",10,60302748,60657333,354586,2,Cdh23-201,101671,Cdh23-201;Cdh23-203;Cdh23-202;Cdh23-204;Cdh23-205;Cdh23-209;Cdh23-210,Cdh23;Cdh23;Cdh23;Cdh23;Cdh23;Cdh23;Cdh23,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,14,22295,ENSMUSG00000012819,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24179,cg03664025,-0.00000134,0.00000165,-0.812294343,0.417246083,loss,ns,0.0000052,0.0000028,1.854119172,0.064671765,pos,ns,0.001922799,0.000821165,2.341549261,0.019836975,pos,ns,1.702524554,-0.0000541,0.0000282,-1.916748612,0.056189029,neg,ns,0.959949095,Tnrc6a,Tnrc6a_Exon,7,123179791,123179840,123179839,123179840,50,-,AAAGGCCCTGGTTCTCGGCCTCAGATTTCCAAAGAGTCTTCCATGGAGCG,"Exon (Tnrc6a-201/Tnrc6a, exon 12 of 24)",7,123124177,123193987,69811,1,Tnrc6a-203,55614,Tnrc6a-203;Tnrc6a-201;Tnrc6a-210;Tnrc6a-205;Tnrc6a-202;Tnrc6a-207;Tnrc6a-208,Tnrc6a;Tnrc6a;Tnrc6a;Tnrc6a;Tnrc6a;Tnrc6a;Tnrc6a,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,17,24,233833,ENSMUSG00000052707,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15397,cg21171640,-0.00000725,0.00000151,-4.810218786,0.00000236,loss,ns,0.00000475,0.00000256,1.853876256,0.064706627,pos,ns,0.000568868,0.000750313,0.758174318,0.448922624,pos,ns,0.347828507,-0.0000577,0.0000258,-2.235323568,0.026107995,neg,ns,0.968925986,Gria2,Gria2_Intron,3,80690631,80690680,80690679,80690680,50,-,GCCTAAGCAAACGGTAAGATTTGCAGAGCCAAATGAGCATTAATGTATCG,"Intron (Gria2-201/Gria2, intron 14 of 15)",3,80681450,80802835,121386,2,Gria2-201,112155,Gria2-201;Gria2-202;Gria2-203;Gria2-206,Gria2;Gria2;Gria2;Gria2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,19,14800,ENSMUSG00000033981,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9491,cg10967836,-0.00000757,0.00000288,-2.625010132,0.009094124,loss,ns,-0.00000908,0.0000049,-1.853648147,0.064739379,neg,ns,-0.004627586,0.001435127,-3.224513738,0.001396442,neg,ns,2.854977154,0.0000585,0.0000494,1.185405917,0.236764866,pos,ns,0.924186112,Fam120a,Fam120a_Exon,13,48889124,48889173,48889124,48889125,50,-,CGCCCTGGGACTTGCTAGTCCTGCTGCTGTCACTGCCTGAGAAGGCTCCG,"Exon (Fam120a-201/Fam120a, exon 15 of 18)",13,48879219,48968017,88799,2,Fam120a-201,78844,Fam120a-201,Fam120a,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,8,218236,ENSMUSG00000038014,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22021,cg11236345,-0.00000619,0.00000347,-1.784695439,0.075288514,loss,ns,0.0000109,0.00000589,1.853555008,0.064752756,pos,ns,0.00377294,0.001726952,2.184739947,0.029656541,pos,ns,1.5278795,-0.000115453,0.0000594,-1.943981503,0.052802211,neg,ns,0.931773754,Elavl4,Elavl4_threeUTR,4,110205302,110205351,110205350,110205351,50,+,CTTGCTTTTGGGTTTTGACTGTGGGGAACTGTGGTACCCTGGGTAGAACG,3' UTR,4,110203722,110287527,83806,2,Elavl4-204,82176,Elavl4-204;Elavl4-201;Elavl4-203;Elavl4-202;Elavl4-205;Elavl4-206;Elavl4-207;Elavl4-211,Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,8,36,15572,ENSMUSG00000028546,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17907,cg25707473,-0.0000338,0.00000555,-6.093376657,3.28E-09,loss,yes,0.0000175,0.00000943,1.852928162,0.064842844,pos,ns,-0.002061151,0.002763087,-0.745959406,0.456257211,neg,ns,0.340790259,0.000119396,0.000095,1.256507579,0.209878006,pos,ns,0.88836909,Dlg2,Dlg2_Exon,7,92420625,92420674,92420673,92420674,50,+,CTTGCAGAACATGTTTCTTCTAATGCCAGCGATAGCGAAAGTAGCTACCG,"Exon (Dlg2-218/Dlg2, exon 17 of 23)",7,90477231,92449247,1972017,1,Dlg2-217,1943394,Dlg2-217;Dlg2-204;Dlg2-201;Dlg2-220;Dlg2-218;Dlg2-219;Dlg2-203;Dlg2-202;Dlg2-212;Dlg2-208;Dlg2-207;Dlg2-214,Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,21,23859,ENSMUSG00000052572,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16071,cg25810458,0.0000949,0.0000158,6.023982279,4.82E-09,gain,yes,-0.0000496,0.0000268,-1.852927531,0.064842934,neg,ns,0.030117066,0.007842159,3.840405156,0.000148946,pos,ns,3.826970055,-0.000227728,0.000269691,-0.844403021,0.399095401,neg,ns,0.727277163,Zfp407,Zfp407_Intron,18,84353434,84353483,84353434,84353435,50,+,CGATAAATTACATCTGCACTGGCTTTTCATCTGCTGTTCGATATAAGTGA,"Intron (Zfp407-201/Zfp407, intron 2 of 2)",18,84128027,84558425,430399,2,Zfp407-201,204942,Zfp407-201;Zfp407-202;Zfp407-203,Zfp407;Zfp407;Zfp407,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,32,240476,ENSMUSG00000048410,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14041,cg14473568,0.0000553,0.00000741,7.464711564,8.51E-13,gain,yes,-0.0000233,0.0000126,-1.85262778,0.06488605,neg,ns,0.002181419,0.00368915,0.591306633,0.554745898,pos,ns,0.2559059,0.0000696,0.00012687,0.548272163,0.583899638,pos,ns,0.160625111,Robo2,Robo2_Promoter,16,74412245,74412294,74412293,74412294,50,+,TTCTCCGTGAGTGATTTCATGGAAGCCCTTCCTAATTATTCATCCCTCCG,Promoter (<=1kb),16,74349795,74411825,62031,2,Robo2-209,-420,Robo2-203;Robo2-210;Robo2-202;Robo2-211;Robo2-206;Robo2-209,Robo2;Robo2;Robo2;Robo2;Robo2;Robo2,0;0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,11,268902,ENSMUSG00000052516,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21733,cg17876210,0.0000249,0.00000324,7.667351783,2.28E-13,gain,yes,-0.0000102,0.00000551,-1.85260426,0.064889434,neg,ns,-0.002735148,0.001613653,-1.695003401,0.091078942,neg,ns,1.040582021,0.0000785,0.0000555,1.414243054,0.158294084,pos,ns,0.924511934,Zfhx3,Zfhx3_Exon,8,108933960,108934009,108934008,108934009,50,+,CCCACCTCCACAGCGTGGCACCTGACTGCGTGGAGAAGCTCATTATGACG,"Exon (Zfhx3-204/Zfhx3, exon 13 of 16)",8,107942644,108961630,1018987,1,Zfhx3-204,991316,Zfhx3-204;Zfhx3-201,Zfhx3;Zfhx3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,46,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25468,cg13174473,-0.0000132,0.00000478,-2.770377913,0.005936982,loss,ns,0.000015,0.00000811,1.852574429,0.064893726,pos,ns,-0.000162731,0.002376571,-0.068473163,0.945453127,neg,ns,0.024359997,-0.0000676,0.0000817,-0.82710117,0.408815917,neg,ns,0.951585558,Ephb2,Ephb2_Intron,4,136773254,136773303,136773302,136773303,50,+,ATTAACATGCGGAGGCCCTGCAGCCTAAACACCCCAAATAATTGCGTCCG,"Intron (Ephb2-202/Ephb2, intron 2 of 15)",4,136647539,136835988,188450,2,Ephb2-202,62685,Ephb2-202;Ephb2-201;Ephb2-203;Ephb2-204,Ephb2;Ephb2;Ephb2;Ephb2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,15,13844,ENSMUSG00000028664,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9180,cg01491819,-0.00000972,0.0000133,-0.729263696,0.466390997,loss,ns,0.000042,0.0000227,1.852320368,0.064930292,pos,ns,0.009164285,0.006637073,1.380772148,0.168343683,pos,ns,0.773803176,-0.000327095,0.000228248,-1.43306659,0.152846518,neg,ns,0.706049376,Gm2089,Gm2089_Intergenic_downstream,12,47400817,47400866,47400865,47400866,50,-,CCTAAAAATATATTCAGTCTGCTCTGCAGAGTGAATGCAATATAAGATCG,Distal Intergenic,12,47199991,47200469,479,1,Gm2089-201,200875,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,100039190,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24123,cg03435952,0.00000855,0.00000309,2.768692621,0.005967018,gain,ns,-0.00000971,0.00000524,-1.852280746,0.064935997,neg,ns,-0.003833525,0.001536475,-2.495013767,0.01311524,neg,ns,1.882223763,0.000105483,0.0000528,1.996309102,0.046774652,pos,ns,0.934117751,Pcca,Pcca_Intron,14,122755863,122755912,122755911,122755912,50,+,CTGAATTCTCATTTCATTCATCCATAACTAGAAACACCTCGCTTCAAACG,"Intron (Pcca-201/Pcca, intron 19 of 23)",14,122534339,122889944,355606,1,Pcca-201,221524,Pcca-201;Pcca-213;Pcca-210;Pcca-212;Pcca-202,Pcca;Pcca;Pcca;Pcca;Pcca,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,7,110821,ENSMUSG00000041650,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19539,cg26603288,-0.000025,0.0000161,-1.555354077,0.120882053,loss,ns,0.0000507,0.0000273,1.852192176,0.064948749,pos,ns,0.009539817,0.008011573,1.190754538,0.234660941,pos,ns,0.629559192,-0.000310768,0.000275517,-1.127944659,0.260215506,neg,ns,0.403794779,Gm12687,Gm12687_Promoter,4,99624850,99624899,99624850,99624851,50,+,CGTGGGAAAGTTAGGTCATAACTGTAAGTGTAACAGCAAAATTGAATTAA,Promoter (8-9kb),4,99615817,99616522,706,2,Gm12687-201,-8328,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,7,100417847,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21304,cg13629798,-0.00000208,0.00000252,-0.82428972,0.410408715,loss,ns,-0.00000794,0.00000429,-1.852148561,0.06495503,neg,ns,0.000445074,0.00125618,0.354307756,0.723349138,pos,ns,0.140652032,-0.0000654,0.0000432,-1.513189966,0.131250221,neg,ns,0.937313618,Mapkapk3,Mapkapk3_threeUTR,9,107256256,107256305,107256304,107256305,50,-,TTGTTAGAGGTCTTCAGGTCCTTGATCTTCACCTGGTCGTAGTCTACCCG,3' UTR,9,107254927,107289877,34951,2,Mapkapk3-201,33572,Mapkapk3-201;Mapkapk3-206;Mapkapk3-202;Mapkapk3-208;Mapkapk3-205;Mapkapk3-207,Mapkapk3;Mapkapk3;Mapkapk3;Mapkapk3;Mapkapk3;Mapkapk3,0;0;0;0;5631;33474,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,2,102626,ENSMUSG00000032577,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25315,cg18940406,0.000204314,0.0000191,10.71569338,5.30E-23,gain,yes,-0.00006,0.0000324,-1.851686762,0.065021559,neg,ns,0.01846382,0.009489729,1.945663606,0.052598762,pos,ns,1.279024481,-0.000721986,0.000326351,-2.212300371,0.027674617,neg,ns,0.112230217,Plcb1,Plcb1_Exon,2,134786577,134786626,134786577,134786578,50,+,CGTGTGCGTGTCCGACAGCCTCAAGAAGGGCACCAAATTCGTCAAGTGGG,Promoter (<=1kb),2,134786067,135475247,689181,1,Plcb1-205,510,Plcb1-205;Plcb1-202;Plcb1-204;Plcb1-208;Plcb1-201,Plcb1;Plcb1;Plcb1;Plcb1;Plcb1,0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,18795,ENSMUSG00000051177,conserved gene and region,2,134785945,134786751,807,*,807,87,0.721189591,0.845891566,0.107806691,3.93E-69,CpGisland,TRUE,U1,Pr-A
27614,cg17527816,-1.32E-08,0.00000285,-0.004611428,0.996323592,loss,ns,-0.00000897,0.00000485,-1.851652456,0.065026504,neg,ns,0.000919734,0.0014197,0.64783691,0.517569943,pos,ns,0.286030953,-0.000137073,0.0000488,-2.807537291,0.005308563,neg,ns,0.936489869,Pea15a,Pea15a_Exon,1,172199176,172199225,172199224,172199225,50,+,TTCAGCACACGGGTTCTGTAGTCAACCACCATAGTGAGTAGGTCAGGACG,"Exon (Pea15a-201/Pea15a, exon 3 of 4)",1,172196728,172206804,10077,2,Pea15a-201,7579,Dcaf8-207;Dcaf8-202;Dcaf8-206;Dcaf8-201;Dcaf8-203;Pea15a-201;Pea15a-202;Pea15a-203;Pea15a-205;Pea15a-204,Dcaf8;Dcaf8;Dcaf8;Dcaf8;Dcaf8;Pea15a;Pea15a;Pea15a;Pea15a;Pea15a,0;0;0;0;0;0;0;0;0;7579,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,18611,ENSMUSG00000013698,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3122,cg20050736,-0.0000141,0.00000282,-4.993910613,0.00000099,loss,yes,-0.00000887,0.00000479,-1.851628542,0.065029951,neg,ns,-0.002810083,0.001402655,-2.003402407,0.046004195,neg,ns,1.337202567,0.0000553,0.0000482,1.147090091,0.252228932,pos,ns,0.947914733,Kat6a,Kat6a_fiveUTR,8,22862173,22862222,22862221,22862222,50,-,GACTCTATGGATATACAGAATCCTTCACCATGGTAAAACTCGCAAACCCG,5' UTR,8,22859535,22943259,83725,1,Kat6a-202,2638,Kat6a-202;Kat6a-204;Kat6a-201,Kat6a;Kat6a;Kat6a,0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,6,244349,ENSMUSG00000031540,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2370,cg19109204,0.00000682,0.00000189,3.601773257,0.000367958,gain,ns,-0.00000596,0.00000322,-1.851376779,0.065066249,neg,ns,0.000263139,0.000942422,0.279216016,0.780265239,pos,ns,0.107757741,0.0000178,0.0000324,0.548535528,0.583719061,pos,ns,0.051373601,Tfap2b,Tfap2b_Intron,1,19211898,19211947,19211946,19211947,50,+,TGCCAGCCCCCTCGTCTGATTACATCTAGTAATTCTCCACTGAATGAACG,"Intron (Tfap2b-201/Tfap2b, intron 1 of 6)",1,19208914,19238576,29663,1,Tfap2b-201,2984,Tfap2b-201;Tfap2b-204;Tfap2b-202;Tfap2b-205;Tfap2b-203,Tfap2b;Tfap2b;Tfap2b;Tfap2b;Tfap2b,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,40,21419,ENSMUSG00000025927,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
23707,cg26259809,-0.00000768,0.00000282,-2.720189279,0.006892623,loss,ns,-0.00000888,0.0000048,-1.851322902,0.065074019,neg,ns,-0.000188019,0.001405341,-0.133788956,0.893656272,neg,ns,0.048829492,-0.0000759,0.0000483,-1.571177572,0.117161479,neg,ns,0.929601172,Wnk1,Wnk1_Exon,6,119990148,119990197,119990196,119990197,50,-,CAGATGTAGCCATCTCAAGCATGCACATCCCAAAAGCATAAACGTCAACG,Promoter (<=1kb),6,119952869,119990167,37299,2,Wnk1-214,0,Wnk1-202;Wnk1-203;Wnk1-223;Wnk1-204;Wnk1-224;Wnk1-214;Wnk1-211;Wnk1-206;Wnk1-217,Wnk1;Wnk1;Wnk1;Wnk1;Wnk1;Wnk1;Wnk1;Wnk1;Wnk1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,9,232341,ENSMUSG00000045962,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25152,cg17556655,-0.00000405,0.00000307,-1.319511031,0.187972005,loss,ns,0.00000966,0.00000522,1.851322036,0.065074144,pos,ns,0.003290911,0.0015282,2.153456225,0.032053731,pos,ns,1.494121411,-0.000106521,0.0000526,-2.026854253,0.043532941,neg,ns,0.941409297,Ints12,Ints12_Exon,3,133109369,133109418,133109369,133109370,50,-,CGATTACAGATGGTCAAGAAGAAAGCTGCCCAAAAGAAACTCAAGAAGTA,"Exon (Ints12-201/Ints12, exon 7 of 7)",3,133091840,133110988,19149,1,Ints12-201,17529,Arhgef38-202;Ints12-201;Ints12-203,Arhgef38;Ints12;Ints12,125471;0;8982,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,71793,ENSMUSG00000028016,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27427,cg02699578,0.0000656,0.00000943,6.958351766,2.05E-11,gain,yes,-0.0000297,0.000016,-1.851062486,0.065111586,neg,ns,0.005169972,0.004694811,1.101209785,0.271659658,pos,ns,0.56597485,-0.000407938,0.000161454,-2.526650109,0.012013002,neg,ns,0.080741408,Tmem189,Tmem189_Intergenic_upstream,2,167765295,167765344,167765295,167765296,50,+,CGGCCCAAGCTTCCCAGAACTCGGGTATTAATGACCCGGAGCCACATGAC,Distal Intergenic,2,167643228,167689822,46595,2,Tmem189-204,-75473,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,407243,ENSMUSG00000090213,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14072,cg20996079,0.00000777,0.00000133,5.842110468,0.000000013,gain,yes,-0.00000418,0.00000226,-1.850878798,0.065138095,neg,ns,0.000304441,0.000661712,0.460081348,0.645780357,pos,ns,0.189915169,0.00000518,0.0000228,0.22780057,0.819951457,pos,ns,0.033291931,Evx2,Evx2_Intergenic_downstream,2,74649195,74649244,74649243,74649244,50,+,CTGAGAGACCAACTTTACATGCTTATGTAATTGATTGAGGCGCTGACCCG,Distal Intergenic,2,74655616,74659419,3804,2,Evx2-202,10175,Evx2-201,Evx2,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,35,14029,ENSMUSG00000001815,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
5583,cg01280744,-0.00000205,0.0000208,-0.098873567,0.92130256,loss,ns,0.0000653,0.0000353,1.850692618,0.065164973,pos,ns,0.078321547,0.010333172,7.579623066,4.04E-13,pos,yes,12.39314417,-0.002133433,0.000355357,-6.00363431,5.39E-09,neg,yes,0.76318072,Pbx3,Pbx3_Intron,2,34287012,34287061,34287060,34287061,50,-,ATAAAACAATTATCTGTTAGCCGTTCATTTGATTTTCCATTTCAATTACG,"Intron (Pbx3-202/Pbx3, intron 2 of 7)",2,34171457,34372038,200582,2,Pbx3-202,84977,Pbx3-202;Pbx3-201;Pbx3-210;Pbx3-206;Pbx3-207;Pbx3-209;Pbx3-204;Pbx3-205;Pbx3-203,Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,82,18516,ENSMUSG00000038718,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7919,cg00780852,-0.0000267,0.0000139,-1.922742818,0.055428357,loss,ns,0.0000436,0.0000236,1.850394338,0.065208054,pos,ns,0.000789611,0.006901111,0.114417974,0.908980536,pos,ns,0.041445416,-0.000199633,0.000237329,-0.841168689,0.400901812,neg,ns,0.552921095,Hif1an,Hif1an_Intron,19,44632754,44632803,44632802,44632803,50,+,TTCATCTGTGAGCTCCTTCAAGCGCTTCTCAGAGAAGATTGGAAAACTCG,"Intron (Gm35460-201/Gm35460-201, intron 3 of 6)",19,44562850,44576274,13425,1,Hif1an-201,69904,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,31,319594,ENSMUSG00000036450,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16592,cg11945128,0.00005,0.00000815,6.139669578,2.53E-09,gain,yes,-0.0000256,0.0000138,-1.85022931,0.065231899,neg,ns,-0.001094583,0.004054207,-0.269986967,0.78734992,neg,ns,0.103832212,0.000141724,0.000139424,1.016494135,0.310186809,pos,ns,0.134813134,Six3,Six3_Intron,17,85618550,85618599,85618598,85618599,50,-,TGCAGTTTCGGGGTCACGAGCTGCTTTCAAAAAGTTGAACACAATATTCG,"Intron (Six3-202/Six3, intron 1 of 2)",17,85613608,85625222,11615,1,Six3-202,4942,Six3-202;Six3-203;Six3-201,Six3;Six3;Six3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,24,20473,ENSMUSG00000038805,mapped to different genes,17,85618467,85618636,170,*,170,15,0.652941177,0.831160365,0.088235294,6.13E-11,CpGisland,TRUE,U13,Hc-P
152,cg06474943,-0.0000123,0.00000439,-2.808263471,0.005296908,loss,ns,0.0000138,0.00000745,1.85019674,0.065236606,pos,ns,0.000939245,0.002183036,0.430246922,0.66731498,pos,ns,0.175669126,-0.0000764,0.0000751,-1.017214222,0.309844753,neg,ns,0.921484524,Gria4,Gria4_Intron,9,4424238,4424287,4424238,4424239,50,+,CGTTGTAACCTTCTCTATAGGTTGCTAAATTCTGGGTATTCTGCGAGGAA,"Intron (Gria4-202/Gria4, intron 16 of 16)",9,4417896,4796142,378247,2,Gria4-202,371855,Gria4-202;Gria4-204;Gria4-201,Gria4;Gria4;Gria4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,18,14802,ENSMUSG00000025892,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
605,cg24191159,0.0000361,0.00000549,6.578723539,2.02E-10,gain,yes,-0.0000172,0.00000932,-1.850127543,0.065246607,neg,ns,-0.003219353,0.002729981,-1.179258418,0.239199545,neg,ns,0.621239651,0.0000821,0.0000939,0.874051713,0.382766698,pos,ns,0.786516711,Macrod1,Macrod1_Intron,19,7176227,7176276,7176227,7176228,50,-,CGGCTGGCTGGGGCCCAAGCCATCTCCTGGTAATTGAGTTTCAGGGATGC,"Intron (Macrod1-201/Macrod1, intron 3 of 10)",19,7056810,7198057,141248,1,Macrod1-201,119417,Macrod1-201,Macrod1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,11,107227,ENSMUSG00000036278,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16425,cg25049678,-0.00000596,0.00000291,-2.044713184,0.041727457,loss,ns,-0.00000915,0.00000495,-1.850018517,0.065262368,neg,ns,-0.002133671,0.001449658,-1.471844251,0.142077378,neg,ns,0.847475066,0.0000556,0.0000499,1.11499166,0.265717628,pos,ns,0.931379947,Fbxw7,Fbxw7_threeUTR,3,84978421,84978470,84978421,84978422,50,-,CGTTTTAGTCCCAGACTGAATTCCAAATTTGCTCTAGTTTGGTTATGGAA,3' UTR,3,84815268,84979198,163931,1,Fbxw7-204,163153,Fbxw7-204;Fbxw7-205;Fbxw7-203;Fbxw7-202;Fbxw7-201;Gm37240-203,Fbxw7;Fbxw7;Fbxw7;Fbxw7;Fbxw7;Gm37240,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,10,50754,ENSMUSG00000028086,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11069,cg00912815,-0.0000445,0.0000183,-2.426130457,0.015831052,loss,ns,0.0000576,0.0000311,1.849802299,0.065293632,pos,ns,0.071451967,0.009122354,7.832624099,7.67E-14,pos,yes,13.11524651,-0.002948628,0.000313717,-9.399007296,1.26E-18,neg,yes,0.39393313,Gm28900,Gm28900_Intergenic_downstream,1,56501781,56501830,56501829,56501830,50,-,TATGCCAGAAGGCTGTGGATCAGAGGTCAACACCTGCTCCTCCCTGTGCG,Distal Intergenic,1,56451407,56451562,156,1,Gm28900-201,50423,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,12,102635907,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19583,cg00244213,-0.00000105,0.00000101,-1.038311789,0.299934106,loss,ns,0.00000319,0.00000172,1.849790038,0.065295406,pos,ns,0.00055639,0.000504906,1.101967308,0.271330697,pos,ns,0.566501069,-0.0000185,0.0000174,-1.067382839,0.286629514,neg,ns,0.984671025,Hnrnpd,Hnrnpd_threeUTR,5,99962127,99962176,99962175,99962176,50,+,CTCGTACCCTGTCCGCATTGAGCGGGCCTGTGAGAATCGTGAAGTCAGCG,3' UTR,5,99955935,99978938,23004,2,Hnrnpd-211,16762,Hnrnpd-211;Hnrnpd-201;Hnrnpd-203;Hnrnpd-202;Hnrnpd-208;Hnrnpd-209;Hnrnpd-204;Hnrnpd-205;Hnrnpd-206;Hnrnpd-210,Hnrnpd;Hnrnpd;Hnrnpd;Hnrnpd;Hnrnpd;Hnrnpd;Hnrnpd;Hnrnpd;Hnrnpd;Hnrnpd,0;0;0;0;0;0;0;0;4211;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,8,11991,ENSMUSG00000000568,conserved gene and region,5,99962102,99962210,109,*,109,11,0.614678899,1.07437276,0.100917431,9.65E-09,CpGisland,TRUE,U10,Tr-S
15127,cg09636160,-0.0000208,0.00000955,-2.173982226,0.030462794,loss,ns,0.00003,0.0000162,1.849589175,0.065324462,pos,ns,0.007176045,0.004752746,1.509873555,0.132094257,pos,ns,0.879116064,-0.0000798,0.000163447,-0.488002631,0.62589295,neg,ns,0.83653637,Gm48470,Gm48470_Intergenic_downstream,13,79278018,79278067,79278018,79278019,50,-,CGGCAAATACAAATTTTTCACTCAGCAGGCATAATCAGAGCTAACTCGAG,Distal Intergenic,13,79441143,79441407,265,2,Gm48470-201,163389,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,20,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11627,cg23231910,0.0000128,0.00000266,4.801654231,0.00000245,gain,ns,-0.00000836,0.00000452,-1.84955633,0.065329214,neg,ns,0.001887102,0.001324234,1.42505217,0.155148125,pos,ns,0.809253468,-0.00016056,0.0000455,-3.525679814,0.00048614,neg,ns,0.040727416,Fzd7,Fzd7_Exon,1,59483139,59483188,59483139,59483140,50,+,CGCCTACAACCAGACCATCCTGCCCAACCTGCTGGGCCACACGAACCAAG,Promoter (<=1kb),1,59482424,59486955,4532,1,Fzd7-201,715,Fzd7-201,Fzd7,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,14369,ENSMUSG00000041075,conserved gene and region,1,59482426,59483140,715,*,715,86,0.713286713,0.946815718,0.12027972,6.22E-73,CpGisland,TRUE,NA,NRS
10603,cg14472711,-0.000007,0.00000203,-3.457442171,0.000621536,loss,ns,-0.00000637,0.00000344,-1.849488437,0.065339038,neg,ns,-0.000725085,0.001008282,-0.719129056,0.472603138,neg,ns,0.325503399,-0.0000215,0.0000347,-0.621146459,0.534959715,neg,ns,0.961153724,Acin1,Acin1_Exon,14,54650875,54650924,54650875,54650876,50,+,CGTACATGAGGTACTTGGACAAAGTTTTACGGGGAAGAAGGACCTTGTAA,"Exon (Acin1-213/Acin1, exon 4 of 4)",14,54642161,54653616,11456,2,Acin1-208,2692,Acin1-208;Acin1-216;Acin1-202;Acin1-201;Acin1-219;Acin1-218;Acin1-221;Acin1-224;Acin1-203;Acin1-205;Acin1-211;Acin1-225;Acin1-207;Acin1-204;Acin1-226;Acin1-213;Acin1-214;Acin1-209;Acin1-220;Gm17606-201,Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Gm17606,0;0;0;0;0;0;0;0;0;0;-4828;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,22,56215,ENSMUSG00000022185,conserved gene but different region,14,54650681,54650905,225,*,225,16,0.6,0.802854594,0.071111111,3.42E-10,CpGisland,TRUE,U10,Tr-S
14858,cg04177975,-0.00000892,0.00000276,-3.233341124,0.001355372,loss,ns,-0.00000867,0.00000469,-1.849471785,0.065341448,neg,ns,0.003495026,0.00137288,2.545761859,0.011387838,pos,ns,1.943558723,-0.00011892,0.0000472,-2.518789465,0.012278882,neg,ns,0.93886597,Phf12,Phf12_Exon,11,78023046,78023095,78023094,78023095,50,-,CGCTCCAGTGCAGCATATTGAAACATTTATCTGCTAAGCAGATGCCTTCG,"Exon (Phf12-202/Phf12, exon 9 of 11)",11,77982754,78026214,43461,1,Phf12-202,40292,Phf12-202;Phf12-201;Phf12-207;Phf12-206;Phf12-208;Phf12-205;Phf12-203,Phf12;Phf12;Phf12;Phf12;Phf12;Phf12;Phf12,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,14,27,268448,ENSMUSG00000037791,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19328,cg09001896,-0.0000419,0.00000921,-4.551300265,0.00000767,loss,ns,0.0000289,0.0000156,1.849244806,0.065374302,pos,ns,0.009935427,0.004582012,2.168354801,0.030892037,pos,ns,1.510153448,-0.000449566,0.000157575,-2.853030919,0.004621673,neg,ns,0.694316703,Foxp1,Foxp1_fiveUTR,6,99016611,99016660,99016659,99016660,50,+,GCATTTGCTGGGGAGTGATAACTTGAGGTGTCATCATAGCCACTGACACG,5' UTR,6,98925338,99266515,341178,2,Foxp1-206,249855,Foxp1-206;Foxp1-204;Foxp1-220;Foxp1-230;Foxp1-225;Foxp1-201;Foxp1-205;Foxp1-207;Foxp1-208;Foxp1-226;Foxp1-228;Foxp1-221;Foxp1-222;Foxp1-210;Foxp1-214;Foxp1-209;Foxp1-203;Foxp1-218;Foxp1-231;Foxp1-215,Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,87,108655,ENSMUSG00000030067,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7982,cg22153774,0.00000883,0.00000189,4.665776475,0.00000458,gain,ns,-0.00000594,0.00000321,-1.848990972,0.06541106,neg,ns,0.003344662,0.000941614,3.552053488,0.000441643,pos,ns,3.354928235,-0.000139783,0.0000324,-4.316700082,0.0000213,neg,ns,0.0446269,Pax2,Pax2_Intergenic_upstream,19,44672243,44672292,44672291,44672292,50,-,AATCATCTGCAGAAATACACATTCTGGATTACTGTAGCGTGCCCGGGCCG,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-83802,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,19,44672280,44672396,117,*,117,16,0.837606838,0.806896552,0.136752137,7.42E-15,CpGisland,TRUE,U13,Hc-P
23156,cg12860426,0.0000176,0.00000548,3.204231993,0.001495209,gain,ns,-0.0000172,0.00000931,-1.84861638,0.065465335,neg,ns,-0.010106586,0.00272738,-3.705602496,0.000249688,neg,ns,3.602601803,0.000283259,0.0000938,3.02000347,0.002737915,pos,ns,0.864021283,Rnf220,Rnf220_Intron,4,117370624,117370673,117370624,117370625,50,-,CGCAGGGCTCCTCTGATGTGGTCTGCTTGCCTTTTACAGCATTAGGGGAG,"Intron (Rnf220-201/Rnf220, intron 2 of 14)",4,117271463,117497052,225590,2,Rnf220-201,126379,Rnf220-201;Rnf220-202;Rnf220-207,Rnf220;Rnf220;Rnf220,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24412,cg11021876,0.0000378,0.00000626,6.041392165,4.37E-09,gain,yes,-0.0000197,0.0000106,-1.848558166,0.065473773,neg,ns,0.008507494,0.003116018,2.730245279,0.006690698,pos,ns,2.174528549,-0.00033057,0.00010716,-3.084841566,0.002220095,neg,ns,0.095838278,Grik3,Grik3_Promoter,4,125489359,125489408,125489407,125489408,50,+,TCTACTGTATCGGCACCGCTTTGTCTCTGTCAAAAAGGTCATTAAACTCG,Promoter (1-2kb),4,125490700,125714173,223474,1,Grik3-201,-1292,Grik3-201,Grik3,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,18,14807,ENSMUSG00000001985,conserved gene and region,4,125489315,125489480,166,*,166,11,0.548192771,0.98172043,0.06626506,0.000000769,CpGisland,TRUE,U13,Hc-P
24299,cg06656558,0.0000108,0.00000323,3.354018951,0.00089534,gain,ns,-0.0000101,0.00000549,-1.848456747,0.065488476,neg,ns,0.000468661,0.001607029,0.291632123,0.770762962,pos,ns,0.113079163,-0.00000722,0.0000553,-0.130639881,0.896144927,neg,ns,0.862967133,Ddx55,Ddx55_threeUTR,5,124562621,124562670,124562621,124562622,50,+,CGGGGAATTGATATTCCTGAAGTCAACTGGGTTTTGCAGTATGACCCTCC,3' UTR,5,124552864,124569660,16797,1,Ddx55-201,9757,Ddx55-201;Ddx55-203;Ddx55-204;Ddx55-202;Ddx55-206;Ddx55-205,Ddx55;Ddx55;Ddx55;Ddx55;Ddx55;Ddx55,0;0;9725;0;9663;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,67848,ENSMUSG00000029389,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8487,cg23592313,0.000061,0.0000116,5.245819434,0.000000289,gain,yes,0.0000365,0.0000198,1.848390339,0.065498105,pos,ns,0.016569343,0.005789816,2.861808006,0.004498851,pos,ns,2.34689839,-0.000236508,0.000199111,-1.187818238,0.235814306,neg,ns,0.504830308,Gm13475,Gm13475_Intergenic_upstream,2,45227380,45227429,45227380,45227381,50,-,CGATTCCAGTCCTGACAGGGGGATTATAGGAAACAGATGACTTACGCTTC,Distal Intergenic,2,45329232,45329465,234,1,Gm13475-201,-101852,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,12,21,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13287,cg08058546,0.0000115,0.0000087,1.323612618,0.186607004,gain,ns,0.0000273,0.0000148,1.848316255,0.065508848,pos,ns,-0.000344678,0.004332047,-0.079564643,0.936634854,neg,ns,0.028429685,0.000154335,0.000148979,1.035950563,0.301032624,pos,ns,0.51363119,Pebp4,Pebp4_Intron,14,70001843,70001892,70001891,70001892,50,-,CCCGTGTGCCTGTGATGAACGGAGCTAATTTCTGGTTTGCTGGTATGCCG,"Intron (Pebp4-201/Pebp4, intron 4 of 6)",14,69840420,70059918,219499,1,Pebp4-201,161423,Pebp4-201,Pebp4,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,14,14,73523,ENSMUSG00000022085,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20452,cg00480149,0.00000664,0.00000463,1.433512776,0.152719152,gain,ns,-0.0000145,0.00000787,-1.848279032,0.065514246,neg,ns,0.001287561,0.002305521,0.558468352,0.576927752,pos,ns,0.23887857,-0.000200758,0.0000793,-2.532050203,0.011833332,neg,ns,0.037001585,Csde1,Csde1_threeUTR,3,103058155,103058204,103058155,103058156,50,-,CGAATAAAGTTTTACTGATTTTTGAGACACTAGCACCTAGCGCTTTCATT,3' UTR,3,103020426,103058186,37761,1,Csde1-201,37729,Csde1-201;Csde1-211;Csde1-207;Csde1-214;Csde1-215;Csde1-216;Csde1-206;Csde1-210;Csde1-208;Nras-201;Nras-209;Nras-208;Nras-206;Nras-205;Nras-204;Nras-203;Nras-202;Nras-207,Csde1;Csde1;Csde1;Csde1;Csde1;Csde1;Csde1;Csde1;Csde1;Nras;Nras;Nras;Nras;Nras;Nras;Nras;Nras;Nras,0;0;0;0;0;0;0;0;2101;-81;-144;-163;-390;-392;-539;-699;-699;-784,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,threeUTR,3,10,229663,ENSMUSG00000068823,conserved gene and region,3,103058024,103058374,351,*,351,25,0.552706553,0.988175676,0.071225071,1.21E-15,CpGisland,TRUE,NA,NRS
23542,cg16588616,0.000100849,0.0000061,16.53783418,1.75E-44,gain,yes,-0.0000191,0.0000104,-1.848049673,0.065547517,neg,ns,0.005872361,0.003035067,1.934837055,0.05391982,pos,ns,1.268251565,0.000131903,0.000104376,1.263733635,0.20727513,pos,ns,0.168209681,Sp8,Sp8_Promoter,12,118840924,118840973,118840972,118840973,50,-,GGCCGAAATAACGTGGCCATTATGGCCTGAAATGGGCCAGGTTTGAAGCG,Promoter (5-6kb),12,118846329,118852576,6248,1,Sp8-201,-5405,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,27,29,320145,ENSMUSG00000048562,conserved gene and region,12,118840863,118841021,159,*,159,10,0.503144654,0.999371465,0.062893082,0.00000467,CpGisland,TRUE,U13,Hc-P
14440,cg07600647,0.00000104,0.00000165,0.625960593,0.531801385,gain,ns,0.00000519,0.00000281,1.84794583,0.065562586,pos,ns,0.000229259,0.000823153,0.278513754,0.780803695,pos,ns,0.10745814,0.000000953,0.0000283,0.033651017,0.973177096,pos,ns,0.948393965,Crk,Crk_Exon,11,75692554,75692603,75692602,75692603,50,-,TGATTGGAGGTAACCAGGAGGGTTCCCACCCACAGCCACTGGGTGGGCCG,"Exon (Crk-201/Crk, exon 2 of 3)",11,75679259,75706065,26807,1,Crk-201,13295,Crk-201;Crk-204;Crk-203;Crk-202;Crk-205,Crk;Crk;Crk;Crk;Crk,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,7,12928,ENSMUSG00000017776,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8469,cg26984049,-0.00000493,0.00000102,-4.834415861,0.00000211,loss,ns,0.0000032,0.00000173,1.847802855,0.065583337,pos,ns,0.000538368,0.000507879,1.060032647,0.289954948,pos,ns,0.537669476,-0.0000187,0.0000175,-1.068135202,0.28629059,neg,ns,0.040005158,Gpr137c,Gpr137c_threeUTR,14,45220810,45220859,45220858,45220859,50,+,CCAGCCATTACGTCACCAGGCAGAGCTGTTCCTCTGCTATTGTTGCTGCG,3' UTR,14,45219717,45224713,4997,1,Gpr137c-207,1093,Gpr137c-207;Gpr137c-202;Gpr137c-205;Gpr137c-201;Gpr137c-206;Gpr137c-204;Txndc16-205;Txndc16-201;Txndc16-203;Txndc16-207;Txndc16-204;Txndc16-206;Txndc16-209;Txndc16-211;Txndc16-208;Txndc16-202,Gpr137c;Gpr137c;Gpr137c;Gpr137c;Gpr137c;Gpr137c;Txndc16;Txndc16;Txndc16;Txndc16;Txndc16;Txndc16;Txndc16;Txndc16;Txndc16;Txndc16,0;0;0;0;0;0;-1385;-1416;0;-1420;-1428;-1413;-1408;-1414;-1446;-1420,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,6,70713,ENSMUSG00000049092,conserved gene but different region,14,45220805,45220995,191,*,191,13,0.539267016,0.994791667,0.068062827,3.86E-08,CpGisland,TRUE,NA,NRS
23776,cg25803243,0.0000125,0.00001,1.255026639,0.210414374,gain,ns,0.0000314,0.000017,1.847784009,0.065586073,pos,ns,0.002640343,0.004975429,0.530676524,0.59602291,pos,ns,0.224737046,0.000118276,0.000171105,0.691250644,0.489925357,pos,ns,0.510419608,Foxo6,Foxo6_Intergenic_upstream,4,120332955,120333004,120332955,120332956,50,-,CGGCAAAGCCCTATTACTCAGCTTTTGATAGGAGCTTACTTGTCTCAAGT,Distal Intergenic,4,120267079,120287349,20271,2,Foxo6-201,-45655,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,9,42,329934,ENSMUSG00000052135,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10727,cg03263465,-0.00000145,0.00000244,-0.592945087,0.55365021,loss,ns,0.00000767,0.00000415,1.847525976,0.065623539,pos,ns,0.001800498,0.001215473,1.481314852,0.139538387,pos,ns,0.855306303,-0.0000402,0.0000418,-0.96070343,0.337450025,neg,ns,0.953686404,Sf3b1,Sf3b1_Exon,1,55016396,55016445,55016396,55016397,50,+,CGCTCTGGGGAAATTATCATGGTCCGCCTATGCTTTTTGTATTCATCTTC,"Exon (Sf3b1-201/Sf3b1, exon 4 of 25)",1,54985169,55027481,42313,2,Sf3b1-201,11036,Sf3b1-201;Sf3b1-203;Sf3b1-205;Sf3b1-208;Sf3b1-206;Sf3b1-204,Sf3b1;Sf3b1;Sf3b1;Sf3b1;Sf3b1;Sf3b1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,7,81898,ENSMUSG00000025982,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7706,cg17876356,0.00000305,0.00000429,0.710255275,0.478079802,gain,ns,0.0000135,0.00000729,1.847459713,0.065633163,pos,ns,0.002171102,0.00213717,1.015876954,0.310480181,pos,ns,0.507966117,-0.0000831,0.0000735,-1.130063641,0.259323009,neg,ns,0.927113033,Arhgap15,Arhgap15_Intron,2,43789065,43789114,43789065,43789066,50,+,CGTGTCAGTTTTCAAAGAGCATATTAAAAACTGATAAGCAGAACCATCTC,"Intron (Arhgap15-203/Arhgap15, intron 2 of 14)",2,43748824,44395953,647130,1,Arhgap15-203,40241,Arhgap15-203;Arhgap15-202;Arhgap15-205;Arhgap15-201,Arhgap15;Arhgap15;Arhgap15;Arhgap15,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,72,78,76117,ENSMUSG00000049744,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7660,cg11406035,0.0000819,0.0000201,4.081112892,0.0000571,gain,ns,-0.000063,0.0000341,-1.847231671,0.065666293,neg,ns,0.01775091,0.009988754,1.777089419,0.076534001,pos,ns,1.116145585,-0.000474939,0.000343512,-1.382594834,0.167784318,neg,ns,0.547680211,Zbtb20,Zbtb20_Exon,16,43610525,43610574,43610525,43610526,50,+,CGGGCAGCCATTGCCAAGTACCCAGCTCTACTTACGCCAGACAGAAACCC,"Exon (Zbtb20-204/Zbtb20, exon 14 of 15)",16,42907652,43642602,734951,1,Zbtb20-204,702873,Zbtb20-204;Zbtb20-215;Zbtb20-201;Zbtb20-203;Zbtb20-219;Zbtb20-216;Zbtb20-220;Zbtb20-202;Zbtb20-205,Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,17,98,56490,ENSMUSG00000022708,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8658,cg26962970,-0.00000448,0.00000285,-1.57293421,0.116754074,loss,ns,0.00000894,0.00000484,1.84690065,0.065714408,pos,ns,0.002635147,0.001418616,1.857547338,0.064181426,pos,ns,1.192590638,-0.0000191,0.0000488,-0.391633802,0.695597879,neg,ns,0.948338217,Btrc,Btrc_Intron,19,45494055,45494104,45494103,45494104,50,+,AGCAGCCATCGATCAAGTTCACAAGTTAACACGATAAAGGCTCTGTGCCG,"Intron (Btrc-204/Btrc, intron 1 of 2)",19,45363734,45507736,144003,1,Btrc-204,130321,Btrc-204;Btrc-201;Btrc-210;Btrc-202;Btrc-203;Btrc-209,Btrc;Btrc;Btrc;Btrc;Btrc;Btrc,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,63,98,12234,ENSMUSG00000025217,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7647,cg20746421,0.0000231,0.00000808,2.855244946,0.004590407,gain,ns,0.0000254,0.0000137,1.846827041,0.065725111,pos,ns,0.001526542,0.00402357,0.379399983,0.704650619,pos,ns,0.152026162,0.000100041,0.00013837,0.722995739,0.470227625,pos,ns,0.58331807,Gm5364,Gm5364_Intergenic_upstream,9,43549404,43549453,43549452,43549453,50,+,AGATGCGGCACTAAAACCCTAGATTCAATTTCCCTTTGACATAATAACCG,Distal Intergenic,9,43683053,43683941,889,1,Gm5364-201,-133600,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,4,384931,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2539,cg23134220,0.0000342,0.00000472,7.236337855,3.64E-12,gain,yes,-0.0000148,0.00000802,-1.846653597,0.065750337,neg,ns,0.002373221,0.002349546,1.010076341,0.313246451,pos,ns,0.50411384,-0.0000888,0.0000808,-1.098444951,0.272862639,neg,ns,0.905001612,Abcc5,Abcc5_Exon,16,20402309,20402358,20402309,20402310,50,+,CGCAGAATACAGCCATCCTGAAAATTCTAAAGAACAGCTTCTGTCACTGG,"Exon (Abcc5-208/Abcc5, exon 5 of 5)",16,20331303,20426394,95092,2,Abcc5-202,24036,Abcc5-202;Abcc5-204;Abcc5-213;Abcc5-201;Abcc5-206;Abcc5-208;Abcc5-203;Abcc5-212,Abcc5;Abcc5;Abcc5;Abcc5;Abcc5;Abcc5;Abcc5;Abcc5,0;0;0;0;-2023;0;0;23995,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,6,27416,ENSMUSG00000022822,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27315,cg11950013,0.0000225,0.00000341,6.592753967,1.86E-10,gain,yes,-0.0000107,0.0000058,-1.846556417,0.065764475,neg,ns,0.002794939,0.00169906,1.644990857,0.100985267,pos,ns,0.995741981,0.0000173,0.0000584,0.295731542,0.767633099,pos,ns,0.929748297,Stk4,Stk4_threeUTR,2,164151892,164151941,164151940,164151941,50,-,TTCTGCTCTGTCGTCTCTCCACAGCACCTTTGTGAACTCAGGAATGTGCG,3' UTR,2,164074138,164155524,81387,1,Stk4-201,77754,Stk4-201;Stk4-202,Stk4;Stk4,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,58231,ENSMUSG00000018209,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12993,cg11633019,-0.0000057,0.00000248,-2.301366457,0.022033953,loss,ns,0.00000776,0.00000421,1.846090086,0.065832351,pos,ns,0.002263775,0.001232037,1.837424432,0.067104252,pos,ns,1.173249961,-0.000077,0.0000424,-1.816584381,0.070246425,neg,ns,0.947694845,Khdrbs3,Khdrbs3_threeUTR,15,69093860,69093909,69093860,69093861,50,-,CGTTTTTTCACTAGTGCAACTTTGGATTTTTTATGAGAATTTTGGTACCT,3' UTR,15,68928432,69101211,172780,1,Khdrbs3-204,165428,Khdrbs3-201;Khdrbs3-204;Khdrbs3-206;Khdrbs3-202,Khdrbs3;Khdrbs3;Khdrbs3;Khdrbs3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,5,13992,ENSMUSG00000022332,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
352,cg20603782,0.0000179,0.00000538,3.32953925,0.000974861,gain,ns,-0.0000169,0.00000915,-1.845776161,0.065878076,neg,ns,-0.003225346,0.002679753,-1.203598179,0.229663212,neg,ns,0.638908566,-0.0000904,0.0000922,-0.981280768,0.3272195,neg,ns,0.073332554,Zfhx4,Zfhx4_fiveUTR,3,5221629,5221678,5221677,5221678,50,+,GACACGGGCATCGATCGCTTCCATTGAGAGCAATGCAAAAACACAGCCCG,5' UTR,3,5218526,5413165,194640,1,Zfhx4-203,3103,Zfhx4-203;Zfhx4-202;Zfhx4-201;Zfhx4-204,Zfhx4;Zfhx4;Zfhx4;Zfhx4,0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,10,77,80892,ENSMUSG00000025255,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
24173,cg17062776,0.0000267,0.0000221,1.210414619,0.227041912,gain,ns,-0.0000692,0.0000375,-1.845771522,0.065878752,neg,ns,0.043448973,0.010991338,3.953019263,0.0000956,pos,ns,4.019342325,-0.001528303,0.000377991,-4.043223958,0.0000666,neg,ns,0.574650733,Setd1b,Setd1b_threeUTR,5,123168590,123168639,123168638,123168639,50,+,CTTTTATAAAGCAAACCATAAATATACTGACTTTTCTTACAGATACGCCG,3' UTR,5,123142193,123168629,26437,1,Setd1b-204,26397,Hpd-201;Hpd-205;Hpd-203;Psmd9-206;Setd1b-206;Setd1b-204;Setd1b-201;Setd1b-205;Setd1b-203,Hpd;Hpd;Hpd;Psmd9;Setd1b;Setd1b;Setd1b;Setd1b;Setd1b,14088;4272;7276;-774;0;0;25633;5881;5209,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,9,208043,ENSMUSG00000038384,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21341,cg26909115,-0.00000495,0.00000381,-1.297780551,0.195327571,loss,ns,0.0000119,0.00000647,1.845520706,0.065915304,pos,ns,0.001183491,0.00189647,0.624049458,0.533054055,pos,ns,0.273228749,-0.00000149,0.0000652,-0.022776283,0.98184338,neg,ns,0.917307206,Kcnc4,Kcnc4_threeUTR,3,107439406,107439455,107439454,107439455,50,-,GGCAGGTCTCTGTGTTTAAAGAGCACAGGTGTGAGACACTGGGACGCACG,3' UTR,3,107438303,107459552,21250,2,Kcnc4-201,20097,Kcnc4-201;Kcnc4-202,Kcnc4;Kcnc4,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,12,99738,ENSMUSG00000027895,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2268,cg26263431,0.0000711,0.00000613,11.60427287,4.26E-26,gain,yes,-0.0000192,0.0000104,-1.845343401,0.065941154,neg,ns,-0.009358831,0.003049475,-3.068997068,0.002337562,neg,ns,2.631236905,0.000319775,0.000104871,3.049212662,0.002492261,pos,ns,0.097207663,Meis1,Meis1_Intergenic_downstream,11,18878345,18878394,18878393,18878394,50,-,TATCTAAATGAATTTTAATGCTAAACGAGGGTAATTCCCCATTTGTAGCG,Distal Intergenic,11,18880668,19012002,131335,2,Meis1-203,133657,Meis1-206;Meis1-202;Meis1-209;Meis1-201;Meis1-203;Meis1-208;Meis1-207,Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1,0;0;0;0;0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,88,17268,ENSMUSG00000020160,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
8677,cg22289253,0.000000298,0.00000291,0.102688752,0.918276395,gain,ns,0.00000911,0.00000494,1.845223374,0.065958657,pos,ns,0.001792821,0.001445883,1.239948852,0.215932068,pos,ns,0.665682855,-0.0000113,0.0000497,-0.227782617,0.819965402,neg,ns,0.929968553,Poll,Poll_Intergenic_downstream,19,45539061,45539110,45539109,45539110,50,+,TTTATCCTTTATTAATGAGGCACCGAGTGCCCTGCTGTTTTAGAGCAGCG,Distal Intergenic,19,45552275,45560531,8257,2,Poll-201,21421,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,16,56626,ENSMUSG00000025218,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6805,cg15618330,-0.00000704,0.00000981,-0.717789419,0.473427695,loss,ns,-0.0000307,0.0000167,-1.845029602,0.065986923,neg,ns,0.013225634,0.004882453,2.708809484,0.007127752,pos,ns,2.147047398,-0.000882743,0.000167907,-5.257329125,0.000000273,neg,yes,0.917639857,Nek6,Nek6_Intron,2,38572069,38572118,38572117,38572118,50,+,GCTGGCATGAAAGGGCATTAGTCAGTGCCATGGTCGGGCTGACAGGTGCG,"Intron (Nek6-201/Nek6, intron 7 of 9)",2,38511643,38594606,82964,1,Nek6-201,60426,Nek6-201;Nek6-203;Nek6-202,Nek6;Nek6;Nek6,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,5,59126,ENSMUSG00000026749,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8220,cg24586462,-0.00000926,0.00000421,-2.198154342,0.028677066,loss,ns,0.0000132,0.00000716,1.844926575,0.066001956,pos,ns,-0.002470791,0.002096494,-1.17853457,0.239487384,neg,ns,0.62071736,0.0000358,0.0000721,0.496363965,0.619989408,pos,ns,0.922985848,Gm5246,Gm5246_Intergenic_downstream,19,44880740,44880789,44880740,44880741,50,+,CGGGTGCCACGCAGCTTCATTCCCCACCATATGGGCCCAAAAGCCAAATC,Distal Intergenic,19,44851009,44851979,971,1,Gm5246-201,29731,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,20,383450,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8238,cg01308925,0.00000826,0.0000337,0.24492893,0.806673511,gain,ns,0.00010573,0.0000573,1.844856277,0.066012215,pos,ns,-0.002069515,0.016790023,-0.123258615,0.901982186,neg,ns,0.04480204,0.00052001,0.000577408,0.900594011,0.368503315,pos,ns,0.531405762,Slf2,Slf2_Intergenic_upstream,19,44893767,44893816,44893815,44893816,50,-,CATGTTTCAAAAATTCTCTGTGTGCACTCAATCACGGCCCAGGGAAGGCG,Distal Intergenic,19,44931151,44983188,52038,1,Slf2-201,-37384,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,15,17,226151,ENSMUSG00000036097,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1847,cg24723713,-0.0000302,0.00000702,-4.298275951,0.0000231,loss,ns,0.000022,0.0000119,1.844766272,0.066025351,pos,ns,-0.007977615,0.003494261,-2.283062186,0.023103338,neg,ns,1.636325274,0.000183672,0.000120167,1.528469074,0.127415809,pos,ns,0.899302695,Psat1,Psat1_Intergenic_downstream,19,15554058,15554107,15554106,15554107,50,-,TTATGACACTTCTACTGCCTGATTATCCCACTTTATGGCAATTTGCATCG,Distal Intergenic,19,15905130,15909712,4583,2,Psat1-204,355654,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,14,17,107272,ENSMUSG00000024640,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4118,cg14667871,0.000132528,0.000016,8.266346604,4.09E-15,gain,yes,-0.0000502,0.0000272,-1.844736474,0.066029701,neg,ns,0.014370197,0.007979407,1.800910336,0.072688798,pos,ns,1.138532512,-0.000595054,0.000274411,-2.168475542,0.030882773,neg,ns,0.061853566,Fbxl7,Fbxl7_fiveUTR,15,26895001,26895050,26895001,26895002,50,+,CGGCCCACTCACCCTCACTGCCGTACTGTTTGCCATTGTTCGCGCCCATC,Promoter (<=1kb),15,26540459,26895580,355122,2,Fbxl7-201,530,Fbxl7-201;Fbxl7-202,Fbxl7;Fbxl7,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,3,448987,ENSMUSG00000043556,conserved gene but different region,15,26894905,26895811,907,*,907,96,0.70893054,0.843132698,0.10584344,2.28E-75,CpGisland,TRUE,U3,Pr-B
22045,cg25265138,0.0000321,0.00000573,5.603423472,4.64E-08,gain,yes,0.000018,0.00000973,1.844607433,0.06604854,pos,ns,-0.001117287,0.002850926,-0.391903087,0.695399098,neg,ns,0.157765877,-0.0000147,0.000098,-0.149529067,0.881233408,neg,ns,0.718683739,Elavl4,Elavl4_Promoter,4,110292542,110292591,110292590,110292591,50,+,AGTCTTGTTACCCTAAGGCAAATCCAGCCAATCAATACCACCCATTGACG,Promoter (<=1kb),4,110203737,110292722,88986,2,Elavl4-206,131,Elavl4-205;Elavl4-206;Elavl4-207;Elavl4-209,Elavl4;Elavl4;Elavl4;Elavl4,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,1,36,15572,ENSMUSG00000028546,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15801,cg17095319,-0.00000128,0.000000814,-1.569488211,0.117554338,loss,ns,0.00000255,0.00000138,1.844509227,0.066062881,pos,ns,0.000515487,0.00040506,1.272616747,0.204107723,pos,ns,0.690140563,0.0000104,0.0000139,0.749761418,0.453967019,pos,ns,0.020372985,Dpf3,Dpf3_Exon,12,83487644,83487693,83487644,83487645,50,-,CGCGGAATATGTACATTTTTTAGTCTTACTTACGCTTTCAGGGGGTTGTG,Promoter (<=1kb),12,83213751,83487716,273966,2,Dpf3-207,23,Dpf3-207;Dpf3-206,Dpf3;Dpf3,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,16,70127,ENSMUSG00000021221,conserved gene but different region,12,83487566,83487704,139,*,139,13,0.54676259,1.273431994,0.09352518,7.48E-10,CpGisland,TRUE,U1,Pr-A
26677,cg00257950,-0.00000594,0.00000223,-2.663830373,0.008129552,loss,ns,-0.00000698,0.00000379,-1.844243427,0.066101707,neg,ns,-0.001823553,0.001109199,-1.644027026,0.101184333,neg,ns,0.994886727,-0.0000267,0.0000381,-0.700040801,0.48442683,neg,ns,0.947001047,Rere,Rere_Intron,4,150526330,150526379,150526330,150526331,50,-,CGGGAAAAGGGACATTTAAATTAAGTTATAAATTACAATTGAAGAACAAT,"Intron (Rere-202/Rere, intron 10 of 22)",4,150281646,150621966,340321,1,Rere-202,244684,Rere-202;Rere-201,Rere;Rere,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,7,68703,ENSMUSG00000039852,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13609,cg16263101,0.0000453,0.00000321,14.09276914,3.39E-35,gain,yes,-0.0000101,0.00000546,-1.844105813,0.066121816,neg,ns,-0.001574416,0.001598788,-0.984756049,0.325511864,neg,ns,0.487433178,0.0000275,0.000055,0.499631469,0.617689022,pos,ns,0.105256252,Dlx1,Dlx1_Exon,2,71530019,71530068,71530067,71530068,50,-,GTCTCAACAGCCCCGTGTCGGGCAAGGCGGTGTTTATGGAGTTTGGGCCG,"Exon (Dlx1-201/Dlx1, exon 1 of 3)",2,71528113,71533980,5868,1,Dlx1-201,1906,Dlx1-201;Dlx1-202;Dlx1-205;Dlx1-204;Dlx1-203;Dlx1-206;Metap1d-201;Metap1d-205,Dlx1;Dlx1;Dlx1;Dlx1;Dlx1;Dlx1;Metap1d;Metap1d,0;0;0;0;0;-712;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,36,13390,ENSMUSG00000041911,conserved gene and region,2,71530032,71530315,284,*,284,23,0.64084507,0.820912404,0.080985916,1.08E-15,CpGisland,TRUE,U3,Pr-B
14389,cg09753325,-0.0000485,0.00000821,-5.900172605,9.51E-09,loss,yes,0.0000257,0.000014,1.843923131,0.066148518,pos,ns,0.006164762,0.004088641,1.507777925,0.132629775,pos,ns,0.877358966,-0.000468205,0.000140608,-3.329858382,0.000973784,neg,ns,0.644347434,Gmppa,Gmppa_Intergenic_downstream,1,75444399,75444448,75444447,75444448,50,-,CAGCTCCATCATAAATATGATAATTTAATTATTTTCTCAGCAAAACACCG,Downstream (1-2kb),1,75442224,75443179,956,1,Gmppa-203,2224,Gmppa-201;Gmppa-202;Gmppa-210;Gmppa-206;Gmppa-211;Gmppa-208;Gmppa-204;Gmppa-213;Gmppa-205;Gmppa-207;Gmppa-203,Gmppa;Gmppa;Gmppa;Gmppa;Gmppa;Gmppa;Gmppa;Gmppa;Gmppa;Gmppa;Gmppa,8469;8456;8432;8431;8417;8415;8312;7457;2779;2233;2175,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,2,2,69080,ENSMUSG00000033021,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9550,cg22068328,-0.0000039,0.00000413,-0.944217307,0.345793929,loss,ns,0.0000129,0.00000701,1.843807548,0.066165418,pos,ns,0.005005466,0.002053757,2.437224279,0.015362597,pos,ns,1.813535361,-0.000191683,0.0000706,-2.713954748,0.007020559,neg,ns,0.918210988,Mbd5,Mbd5_Exon,2,49258068,49258117,49258068,49258069,50,-,CGTGCACTGCCACAATGCAAACACTAACTTTGTTCACAGTAACAGTCCAG,"Exon (Mbd5-202/Mbd5, exon 11 of 11)",2,48949508,49260558,311051,1,Mbd5-202,308560,Mbd5-202;Mbd5-203;Mbd5-201;Mbd5-215;Mbd5-204,Mbd5;Mbd5;Mbd5;Mbd5;Mbd5,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,10,109241,ENSMUSG00000036792,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6996,cg01943559,-0.00000155,0.00000756,-0.204617872,0.838004968,loss,ns,0.0000237,0.0000128,1.843767376,0.066171292,pos,ns,0.012352035,0.003763417,3.282132719,0.001147864,pos,ns,2.940109546,-0.000535249,0.000129424,-4.13563599,0.0000456,neg,ns,0.596524096,Tmem215,Tmem215_Exon,4,40474491,40474540,40474539,40474540,50,+,CCCTGAGCCTGAGGATAGCATCTTCTTTGTGCCCCAGGACAGTATCATCG,"Exon (Tmem215-201/Tmem215, exon 2 of 2)",4,40472180,40477168,4989,1,Tmem215-201,2311,Tmem215-201;Tmem215-202,Tmem215;Tmem215,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,320500,ENSMUSG00000046593,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21436,cg03462581,-0.00000107,0.00000115,-0.929961466,0.353114629,loss,ns,0.00000359,0.00000195,1.843469555,0.066214856,pos,ns,0.001186136,0.000570295,2.07986246,0.038359529,pos,ns,1.41612673,-0.0000258,0.0000196,-1.315183279,0.189420287,neg,ns,0.967637296,Rbm5,Rbm5_Exon,9,107757075,107757124,107757123,107757124,50,-,ATCAGTGCTCTGGAATTAAATGGACAACATACGGGGAGGACCAACCACCG,"Exon (Rbm5-219/Rbm5, exon 5 of 23)",9,107740371,107770996,30626,2,Rbm5-214,13872,Rbm5-214;Rbm5-219;Rbm5-224;Rbm5-210;Rbm5-201;Rbm5-211;Rbm5-217;Rbm5-212;Rbm5-221;Rbm5-220;Rbm5-223;Rbm5-208;Rbm5-203;Rbm5-204;Rbm5-218,Rbm5;Rbm5;Rbm5;Rbm5;Rbm5;Rbm5;Rbm5;Rbm5;Rbm5;Rbm5;Rbm5;Rbm5;Rbm5;Rbm5;Rbm5,0;0;0;0;0;0;-2985;-2473;0;0;0;0;0;13835;13821,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,11,83486,ENSMUSG00000032580,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6781,cg15944279,-0.0000709,0.0000139,-5.083308573,0.000000643,loss,yes,0.0000437,0.0000237,1.843375474,0.066228622,pos,ns,-0.009101905,0.006939602,-1.311588873,0.190629422,neg,ns,0.719810068,0.0000652,0.000238652,0.273141923,0.784925995,pos,ns,0.733437773,Gm12129,Gm12129_Intergenic_downstream,11,38444000,38444049,38444000,38444001,50,-,CGAGAAAATTAAATCACTTGGGAATGCTAGAAAAGACAGAAAACTTTAAA,Distal Intergenic,11,38219069,38220215,1147,1,Gm12129-201,224980,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,11,276941,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16761,cg04345867,0.00000372,0.00000232,1.60381105,0.109774011,gain,ns,0.00000726,0.00000394,1.843175592,0.066257879,pos,ns,0.004874219,0.001153937,4.223992226,0.0000316,pos,ns,4.500461557,-0.000119399,0.0000397,-3.008748751,0.002838361,neg,ns,0.948090113,Lrba,Lrba_Intron,3,86447569,86447618,86447617,86447618,50,-,TAATGCCACACGATCAGTGGGCTGCAATGCTGGCAGCTGGCCTGGGATCG,"Intron (Lrba-202/Lrba, intron 37 of 50)",3,86224680,86746712,522033,1,Lrba-202,222889,Lrba-202;Lrba-204;Lrba-201;Lrba-208,Lrba;Lrba;Lrba;Lrba,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,45,80877,ENSMUSG00000028080,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27365,cg09285200,-0.00000732,0.00000474,-1.545345659,0.123282886,loss,ns,0.0000148,0.00000805,1.843171453,0.066258485,pos,ns,0.002664358,0.002357562,1.130132832,0.259293902,pos,ns,0.586207696,-0.000113052,0.0000811,-1.394384974,0.164199871,neg,ns,0.905922829,Dcaf6,Dcaf6_Exon,1,165367425,165367474,165367425,165367426,50,-,CGCATCTCCTGTTGCACGCACCCTGTTGCTCGTCAAGTGACATGGATCCG,"Exon (Dcaf6-203/Dcaf6, exon 3 of 7)",1,165328698,165460465,131768,2,Dcaf6-201,92991,Dcaf6-201;Dcaf6-203;Dcaf6-204;Dcaf6-205,Dcaf6;Dcaf6;Dcaf6;Dcaf6,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,74106,ENSMUSG00000026571,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22937,cg26726683,0.00000721,0.00000398,1.813929543,0.070655284,gain,ns,0.0000125,0.00000676,1.843137995,0.066263383,pos,ns,0.004908494,0.001979158,2.480091856,0.013665652,pos,ns,1.864369639,-0.000181394,0.0000681,-2.665085461,0.008099963,neg,ns,0.050290352,Isl1,Isl1_Exon,13,116308368,116308417,116308416,116308417,50,+,ATGCCGCATGCCATTCCAAATCCGGAGAAACCCTCAGAATATACTGATCG,"Exon (Isl1-201/Isl1, exon 2 of 6)",13,116298281,116309689,11409,2,Isl1-201,1272,Isl1-201;Isl1-202;Isl1-204;Isl1-205,Isl1;Isl1;Isl1;Isl1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,14,16392,ENSMUSG00000042258,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
12377,cg27071008,-0.0000194,0.00000716,-2.707519164,0.007154865,loss,ns,0.0000224,0.0000122,1.842970294,0.066287939,pos,ns,0.002081856,0.003562543,0.584373594,0.559394007,pos,ns,0.252282191,-0.000194696,0.000122516,-1.589153558,0.113045045,neg,ns,0.845578037,Klf7,Klf7_Exon,1,64078712,64078761,64078760,64078761,50,-,TGAGTCCTCTGGTGGGCCTTTAAGTGGGAGCTTTTTGTATAAACTTTCCG,"Exon (Klf7-202/Klf7, exon 2 of 4)",1,64029447,64121491,92045,2,Klf7-202,42730,Klf7-202;Klf7-201;Klf7-203,Klf7;Klf7;Klf7,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,21,93691,ENSMUSG00000025959,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25392,cg03488082,-0.000002,0.00000286,-0.699065822,0.485035049,loss,ns,0.00000895,0.00000485,1.842784092,0.066315212,pos,ns,0.003228343,0.001422145,2.270052254,0.02389069,pos,ns,1.621771302,-0.000105478,0.0000489,-2.15668833,0.031798566,neg,ns,0.925453558,Gm9341,Gm9341_Intergenic_downstream,7,136196670,136196719,136196718,136196719,50,-,CTTTGTTGAATACAATGGCATACATCTTTAATGCGGCCGCTGTCAAGTCG,Distal Intergenic,7,135952798,135953783,986,1,Gm9341-201,243921,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,27,28,668764,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8558,cg21203829,-0.00000176,0.0000326,-0.053833152,0.957102771,loss,ns,-0.000102122,0.0000554,-1.84263947,0.066336402,neg,ns,0.004164784,0.016236581,0.256506211,0.79773013,pos,ns,0.098144005,-0.000431854,0.000558375,-0.77341325,0.439867202,neg,ns,0.548190187,Btrc,Btrc_Exon,19,45330083,45330132,45330131,45330132,50,+,GTCGTGTAGCGAGCAGGAATGAAATGTTCATAAAGAATTGCTGCATCTCG,"Exon (Gm28578-209/Gm28578-209, exon 6 of 7)",19,45363734,45507736,144003,1,Btrc-204,-33602,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,30,98,12234,ENSMUSG00000025217,conserved gene and region,19,45329908,45330151,244,*,244,14,0.471311475,1.056277056,0.057377049,8.59E-08,CpGisland,TRUE,NA,NRS
27175,cg26305535,-0.00000392,0.00000333,-1.176640238,0.240241829,loss,ns,0.0000104,0.00000565,1.842612895,0.066340296,pos,ns,-0.000288427,0.001656285,-0.174140777,0.861868492,neg,ns,0.064558996,0.0000884,0.000057,1.552661154,0.121524391,pos,ns,0.93926039,Gm826,Gm826_Intergenic_downstream,2,160216267,160216316,160216267,160216268,50,-,CGTAATTATAGTGCTTCTTTAAAGGAGACCCCATAAAAGATGCATGATTA,Distal Intergenic,2,160311393,160313616,2224,2,Gm826-202,97349,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,3,329554,ENSMUSG00000074623,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27693,cg20192941,0.00000432,0.00000927,0.466336429,0.64130223,gain,ns,0.000029,0.0000157,1.842437313,0.066366031,pos,ns,0.009139885,0.004613059,1.981306947,0.048440136,pos,ns,1.314794647,-0.000478286,0.000158643,-3.014865855,0.002783355,neg,ns,0.404348614,Zbtb18,Zbtb18_Intergenic_upstream,1,177384215,177384264,177384263,177384264,50,+,TATGAGACAAAACCACAAATATTTCCCTGTTTGCAAACCCTGTGAAAACG,Distal Intergenic,1,177442351,177447237,4887,1,Zbtb18-209,-58087,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,22,30928,ENSMUSG00000063659,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6103,cg08206382,0.00000473,0.0000066,0.717463326,0.473628529,gain,ns,0.0000206,0.0000112,1.842341125,0.066380133,pos,ns,0.001120371,0.003282572,0.341309013,0.733102188,pos,ns,0.134835484,0.00013349,0.000112887,1.182505877,0.237911207,pos,ns,0.931129648,Dock11,Dock11_Exon,X,36052505,36052554,36052505,36052506,50,+,CGTTCAAGAAAATTACTCCCAATATAGATGAAGAAGGAGCAATGAAAGAA,"Exon (Dock11-201/Dock11, exon 45 of 53)",20,35888832,36076562,187731,1,Dock11-201,163673,Dock11-201;Dock11-203;Dock11-202,Dock11;Dock11;Dock11,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,75974,ENSMUSG00000031093,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20550,cg26129339,0.00000503,0.0000105,0.478917893,0.632334671,gain,ns,-0.0000328,0.0000178,-1.842178822,0.066403933,neg,ns,-0.007543271,0.005223243,-1.44417392,0.149699954,neg,ns,0.824778332,-0.00000309,0.000179627,-0.01721787,0.986273882,neg,ns,0.872684506,Elf5,Elf5_Intron,2,103423992,103424041,103423992,103423993,50,-,CGTGTCACACTGTATGTCACCGTCATCAAAGGGGCTGTGCGTAAACCTGA,"Intron (Elf5-208/Elf5, intron 1 of 6)",2,103411688,103450984,39297,1,Elf5-208,12304,Elf5-208;Elf5-206;Elf5-204;Elf5-201;Elf5-207;Elf5-203,Elf5;Elf5;Elf5;Elf5;Elf5;Elf5,0;0;0;-21;-85;-787,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,13711,ENSMUSG00000027186,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17060,cg11626190,-0.00000273,0.000012,-0.226824634,0.820709608,loss,ns,-0.0000376,0.0000204,-1.841899033,0.066444977,neg,ns,-0.009075642,0.005983755,-1.516713451,0.130358095,neg,ns,0.884861996,-0.0000608,0.000205781,-0.295605596,0.767729201,neg,ns,0.689310653,Mef2d,Mef2d_Exon,3,88158082,88158131,88158130,88158131,50,-,GGGGAGGACTCGCTGGAACAGAGCCCCCTGCTGGAGGACAAGTACCGACG,"Exon (Mef2d-201/Mef2d, exon 4 of 11)",3,88142372,88172086,29715,1,Mef2d-201,15710,Mef2d-201;Mef2d-204;Mef2d-202;Mef2d-203;Mef2d-206;Mef2d-205,Mef2d;Mef2d;Mef2d;Mef2d;Mef2d;Mef2d,0;0;0;0;15508;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,10,17261,ENSMUSG00000001419,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7725,cg22038343,-0.00000551,0.00000333,-1.651655173,0.099617412,loss,ns,-0.0000104,0.00000566,-1.841892502,0.066445935,neg,ns,-0.001772516,0.001659284,-1.068241469,0.286242741,neg,ns,0.543265519,0.00000619,0.0000571,0.108521274,0.913652413,pos,ns,0.919993973,Tpp2,Tpp2_Exon,1,43985401,43985450,43985401,43985402,50,+,CGTTCTAACTCCCAGGGGCAGTCTGCAGCAAAACGACAAGGAAAATTTAA,"Exon (Tpp2-201/Tpp2, exon 24 of 30)",1,43934007,44002971,68965,1,Tpp2-201,51394,Tpp2-201;Tpp2-207;Tpp2-206;Tpp2-208;Tpp2-209,Tpp2;Tpp2;Tpp2;Tpp2;Tpp2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,22019,ENSMUSG00000041763,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25821,cg24558834,0.0000507,0.0000163,3.115345459,0.002009117,gain,ns,0.0000509,0.0000277,1.841883143,0.066447309,pos,ns,0.016807536,0.008100657,2.074836285,0.038826421,pos,ns,1.410872638,0.000031,0.000278581,0.111359157,0.911403612,pos,ns,0.294582097,Uncx,Uncx_Intergenic_downstream,5,139556758,139556807,139556806,139556807,50,+,TGACTAACTACCTCGCTCAATAGTAATTCATTTAGAGAATATTAAAATCG,Distal Intergenic,5,139543898,139545268,1371,1,Uncx-202,12860,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,59,88,22255,ENSMUSG00000029546,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
9352,cg05008055,0.0000135,0.0000194,0.698476479,0.485402899,gain,ns,0.0000606,0.0000329,1.841880493,0.066447698,pos,ns,-0.001595168,0.009633985,-0.165577142,0.868597665,neg,ns,0.061181343,-0.0000151,0.000331312,-0.045471003,0.963761164,neg,ns,0.715052272,Csmd3,Csmd3_Exon,15,48313957,48314006,48313957,48313958,50,-,CGCTGTTCCTCGGAAAGTCTATGGATGGTGACAGCTGTAACACTGGATAC,"Exon (Csmd3-201/Csmd3, exon 7 of 71)",15,47580637,48791933,1211297,2,Csmd3-204,477927,Csmd3-204;Csmd3-201;Csmd3-209;Csmd3-205;Csmd3-203,Csmd3;Csmd3;Csmd3;Csmd3;Csmd3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,16,239420,ENSMUSG00000022311,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19452,cg17820778,-0.00000985,0.00000429,-2.294824394,0.022411083,loss,ns,0.0000134,0.00000729,1.84184682,0.066452639,pos,ns,0.003086694,0.002135889,1.445156415,0.149424035,pos,ns,0.825579541,0.00000159,0.0000735,0.021646927,0.982743526,pos,ns,0.531244332,Foxp1,Foxp1_Intron,6,99339483,99339532,99339483,99339484,50,-,CGGATTGCCCACTAACTCTCAGCATTGGGCAGCTGATGAAAAATTCAACA,"Intron (Foxp1-204/Foxp1, intron 1 of 18)",6,98925342,99435345,510004,2,Foxp1-204,95813,Foxp1-204;Foxp1-220;Foxp1-221;Foxp1-222;Foxp1-224;Foxp1-227;Foxp1-219;Gm20696-201,Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Gm20696,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,87,108655,ENSMUSG00000030067,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14822,cg27273520,-0.0000536,0.0000103,-5.225106484,0.00000032,loss,yes,-0.0000321,0.0000174,-1.841633473,0.066483954,neg,ns,0.005242719,0.005102041,1.027572845,0.30495191,pos,ns,0.515768642,0.000149807,0.000175459,0.853801304,0.393874354,pos,ns,0.646674612,Pipox,Pipox_Intron,11,77887519,77887568,77887567,77887568,50,-,GCAGCTGCAGAGGGGGCCACCAGGTTCTGCCAGCAGCTGTACTGCCTACG,"Intron (Pipox-201/Pipox, intron 2 of 7)",11,77880615,77894096,13482,2,Pipox-201,6528,Pipox-201;Pipox-202;Pipox-203,Pipox;Pipox;Pipox,0;-4833;-2975,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,6,19193,ENSMUSG00000017453,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23137,cg24563436,0.000140917,0.0000176,8.001734607,2.48E-14,gain,yes,-0.0000551,0.0000299,-1.841513615,0.066501552,neg,ns,0.026480632,0.008765073,3.021153498,0.002727837,pos,ns,2.56418153,-0.00079315,0.00030143,-2.631287948,0.00893149,neg,ns,0.244787148,Rnf220,Rnf220_Intron,4,117317914,117317963,117317962,117317963,50,-,AGCAGGCAGCCGGGCGGTGACAGCTGTTCCTCCAATCAATCACGCTGTCG,"Intron (Rnf220-201/Rnf220, intron 2 of 14)",4,117271463,117497052,225590,2,Rnf220-201,179089,Rnf220-201;Rnf220-202;Rnf220-207,Rnf220;Rnf220;Rnf220,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
4965,cg22244821,-0.0000127,0.0000025,-5.08853129,0.000000627,loss,yes,0.00000781,0.00000424,1.841414654,0.066516084,pos,ns,0.002705002,0.001242426,2.177194234,0.030220108,pos,ns,1.519703993,-0.0000953,0.0000427,-2.23038011,0.026437723,neg,ns,0.100484477,Pknox1,Pknox1_fiveUTR,17,31564866,31564915,31564914,31564915,50,+,GTGTGATGAAGATTGGCACCCAGGTAAGCTGTCACTCAACCGCTCCGCCG,Promoter (<=1kb),17,31564734,31607693,42960,1,Pknox1-201,132,Pknox1-201;Pknox1-206;Pknox1-212;Pknox1-209;Pknox1-202;Pknox1-208,Pknox1;Pknox1;Pknox1;Pknox1;Pknox1;Pknox1,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,8,8,18771,ENSMUSG00000006705,conserved gene but different region,17,31564906,31565621,716,*,716,118,0.791899441,1.06992883,0.164804469,2.89E-119,CpGisland,TRUE,U1,Pr-A
25449,cg20417828,0.0000126,0.00000988,1.275428396,0.203112598,gain,ns,0.0000309,0.0000168,1.841289493,0.066534468,pos,ns,0.003207964,0.004917907,0.652302617,0.514689348,pos,ns,0.288454819,0.0000865,0.000169126,0.51130254,0.609503201,pos,ns,0.906782549,Ephb2,Ephb2_Exon,4,136672493,136672542,136672493,136672494,50,+,CGCTCAAACCCCCGTCTTCTGGAACAAGAGCAAAGGGCTGGAGCCACCTG,"Exon (Ephb2-202/Ephb2, exon 9 of 16)",4,136647539,136835988,188450,2,Ephb2-202,163446,Ephb2-202;Ephb2-201;Ephb2-203;Ephb2-206,Ephb2;Ephb2;Ephb2;Ephb2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,15,13844,ENSMUSG00000028664,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5329,cg20420324,-0.00000166,0.00000402,-0.41369552,0.67938316,loss,ns,0.0000126,0.00000683,1.841288562,0.066534605,pos,ns,0.005897871,0.002002125,2.945806057,0.003465155,pos,ns,2.460277318,-0.000179426,0.0000689,-2.605925789,0.009604962,neg,ns,0.912101344,Zfp148,Zfp148_Exon,16,33466892,33466941,33466940,33466941,50,-,AAACCCCTAAATCTCACGTTTGTGAGCACTGCAATGCTGCCTTTAGAACG,"Exon (Zfp148-202/Zfp148, exon 6 of 9)",16,33380836,33504363,123528,1,Zfp148-202,86056,Zfp148-202;Zfp148-205;Zfp148-201,Zfp148;Zfp148;Zfp148,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,7,22661,ENSMUSG00000022811,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8792,cg12846232,-0.000000743,0.00000116,-0.641220049,0.521853498,loss,ns,0.00000363,0.00000197,1.841263199,0.066538331,pos,ns,0.001852853,0.00057705,3.210905422,0.001462019,pos,ns,2.835047039,-0.0000528,0.0000198,-2.660537481,0.008207646,neg,ns,0.974594931,Oga,Oga_Intron,19,45761928,45761977,45761928,45761929,50,+,CGACCTGCAAAGAAACAATGTGAAGTGTATACCTAGAGCCGCTGCGCTTC,"Intron (Oga-201/Oga, intron 11 of 15)",19,45750259,45783551,33293,2,Oga-201,21574,Oga-201;Oga-204;Oga-203;Oga-206,Oga;Oga;Oga;Oga,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,21,76055,ENSMUSG00000025220,conserved gene and region,19,45761874,45761986,113,*,113,12,0.575221239,1.308880309,0.10619469,8.79E-10,CpGisland,TRUE,U10,Tr-S
7372,cg22305903,-0.0000196,0.00000672,-2.909873108,0.003877406,loss,ns,-0.000021,0.0000114,-1.841184701,0.066549864,neg,ns,-0.002036343,0.003344839,-0.608801527,0.543101855,neg,ns,0.265118714,-0.000360037,0.000115029,-3.129970815,0.001914663,neg,ns,0.900227853,Angpt1,Angpt1_Exon,15,42427007,42427056,42427007,42427008,50,-,CGTAAGGAGTAACTGGGCCCTTTGAAGTAGTGCCACTTTATCCCATTCAG,"Exon (Angpt1-201/Angpt1, exon 9 of 9)",15,42424723,42676977,252255,2,Angpt1-201,249921,Angpt1-201,Angpt1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,11600,ENSMUSG00000022309,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24549,cg12967354,-0.00000318,0.00000146,-2.182822765,0.029798862,loss,ns,0.00000455,0.00000247,1.841070374,0.066566663,pos,ns,0.000792517,0.000724371,1.094076202,0.274770938,pos,ns,0.561029203,-0.0000335,0.0000249,-1.345773862,0.179358865,neg,ns,0.966094255,Zmym4,Zmym4_Exon,4,126906510,126906559,126906558,126906559,50,-,TGAAGCCATACCTGGAAAGCTACCACACAGCTGTAGCTGCAGAAGTTGCG,"Exon (Zmym4-201/Zmym4, exon 11 of 30)",4,126861939,126923148,61210,2,Zmym4-204,16589,Zmym4-204;Zmym4-201;Zmym4-208;Zmym4-207,Zmym4;Zmym4;Zmym4;Zmym4,0;0;0;8559,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,8,67785,ENSMUSG00000042446,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2877,cg03957108,0.0000679,0.000005,13.56116508,3.27E-33,gain,yes,-0.0000156,0.0000085,-1.841024425,0.066573416,neg,ns,0.008468961,0.002490174,3.40095089,0.000759508,pos,ns,3.119467605,-0.0000522,0.0000856,-0.609471441,0.542658425,neg,ns,0.078301116,Otx1,Otx1_Promoter,11,22003031,22003080,22003031,22003032,50,+,CGAATAAAATACGGTAACAGAATATGATGGAGGGCACACTGTTTCCTTAA,Promoter (<=1kb),11,21996858,22002897,6040,2,Otx1-202,-134,Ehbp1-201;Ehbp1-202;Ehbp1-207;Otx1-201;Otx1-203;Otx1-202,Ehbp1;Ehbp1;Ehbp1;Otx1;Otx1;Otx1,0;0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,8,13,18423,ENSMUSG00000005917,conserved gene and region,11,22002787,22003135,349,*,349,29,0.581661891,0.986452242,0.083094556,5.69E-20,CpGisland,TRUE,U3,Pr-B
20487,cg00015319,0.000179898,0.00000915,19.66375467,1.88E-56,gain,yes,-0.0000286,0.0000155,-1.840970092,0.066581402,neg,ns,-0.002755467,0.004553403,-0.605144486,0.54552572,neg,ns,0.263184769,0.000325888,0.000156591,2.081136704,0.038241927,pos,ns,0.335365077,Hoxc4,Hoxc4_Intergenic_downstream,15,103086525,103086574,103086525,103086526,50,+,CGTTTTATTTGCAGCATCTTTCATGCTGCTGACGATCGTAAAGGGCTTTA,Distal Intergenic,15,103034395,103036852,2458,1,Hoxc4-201,52130,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,32,91,15423,ENSMUSG00000075394,mapped to different genes,15,103086384,103086562,179,*,179,16,0.625698324,0.932291667,0.089385475,9.87E-12,CpGisland,TRUE,U13,Hc-P
8860,cg18163651,-0.00000115,0.00000336,-0.343479932,0.731470267,loss,ns,-0.0000105,0.0000057,-1.840842316,0.066600185,neg,ns,-0.001081357,0.001670361,-0.647379285,0.517865606,neg,ns,0.285782932,-0.0000281,0.0000574,-0.488904078,0.625255312,neg,ns,0.890052219,Pprc1,Pprc1_Exon,19,46069212,46069261,46069260,46069261,50,-,GGCCCTAGTCGAGTCCATGTGGGCTCTGGGGACCATGACTATTGTGTCCG,"Exon (Pprc1-203/Pprc1, exon 9 of 14)",19,46056539,46072911,16373,1,Pprc1-203,12673,Pprc1-203;Pprc1-202;Pprc1-201;Pprc1-206;Pprc1-209,Pprc1;Pprc1;Pprc1;Pprc1;Pprc1,0;0;0;0;-2493,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,Exon,4,4,226169,ENSMUSG00000055491,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22720,cg19544658,0.00000197,0.00000346,0.56946125,0.569455557,gain,ns,-0.0000108,0.00000588,-1.840375028,0.066668915,neg,ns,-0.004937174,0.001723388,-2.864806999,0.004457571,neg,ns,2.350901776,0.000135861,0.0000593,2.292343136,0.022555589,pos,ns,0.050396089,Meis2,Meis2_Intergenic_downstream,2,115856253,115856302,115856253,115856254,50,-,CGATGAATAGTCAACATTTTTTTCGCCTGTTGGTTCCGCTGATCCAAGCA,Distal Intergenic,2,115864227,115868867,4641,2,Meis2-219,12614,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,97,17536,ENSMUSG00000027210,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
15288,cg19980717,-0.000016,0.0000132,-1.209722712,0.227307007,loss,ns,0.0000412,0.0000224,1.840310227,0.066678451,pos,ns,-0.002952991,0.006563064,-0.449940918,0.653067507,neg,ns,0.185041924,-0.000203347,0.000225703,-0.900947021,0.368315881,neg,ns,0.71918949,Gm8371,Gm8371_Intergenic_downstream,13,80195292,80195341,80195340,80195341,50,+,AGCCCTAACAGCAGGATAATTACTAGATTTATTCATCAAACAAAATCACG,Distal Intergenic,13,80161328,80161879,552,1,Gm8371-201,33964,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,4,666933,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17782,cg14572930,-0.00000453,0.00000473,-0.957428798,0.339096939,loss,ns,-0.0000148,0.00000804,-1.840056261,0.066715834,neg,ns,0.003624775,0.002355517,1.538844488,0.124862333,pos,ns,0.903568555,-0.00019381,0.000081,-2.392540628,0.0173273,neg,ns,0.93061258,Son,Son_threeUTR,16,91662756,91662805,91662804,91662805,50,-,TGGTACCAGCCATTGGCGATAATGGCCGGCCATTATCAGTTCTTCCTGCG,3' UTR,16,91647506,91679207,31702,1,Son-203,15250,Son-203;Son-204;Son-202;Son-208;Son-201;Son-205;Son-212;Son-207,Son;Son;Son;Son;Son;Son;Son;Son,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,14,31,20658,ENSMUSG00000022961,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27753,cg05866783,-0.00000312,0.00000218,-1.432601472,0.152979374,loss,ns,0.0000068,0.0000037,1.839952888,0.066731055,pos,ns,0.000138155,0.00108268,0.127604255,0.898544898,pos,ns,0.046460217,0.0000145,0.0000372,0.390381978,0.696522226,pos,ns,0.933290802,Zfp512b,Zfp512b_Exon,2,181589768,181589817,181589816,181589817,50,+,GCTCACTCCGATGGGCTTGCTGACCCCAACAGGCCGGCTGATGGTGACCG,"Exon (Zfp512b-201/Zfp512b, exon 5 of 17)",2,181582103,181592803,10701,2,Zfp512b-201,2986,Prpf6-202;Uckl1-212;Zfp512b-201;Zfp512b-202;Zfp512b-210;Zfp512b-206;Zfp512b-207;Zfp512b-208;Zfp512b-204;Zfp512b-203;Zfp512b-205;Zfp512b-209,Prpf6;Uckl1;Zfp512b;Zfp512b;Zfp512b;Zfp512b;Zfp512b;Zfp512b;Zfp512b;Zfp512b;Zfp512b;Zfp512b,-2051;-4876;0;0;-3365;-3459;-3407;-2122;-1028;-481;2941;2986,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,269401,ENSMUSG00000000823,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8316,cg24271875,0.0000286,0.0000179,1.597339027,0.11120895,gain,ns,-0.0000559,0.0000304,-1.839861796,0.06674447,neg,ns,0.022441613,0.008904403,2.52028273,0.012227974,pos,ns,1.912645495,-0.000765558,0.000306222,-2.500012258,0.012935319,neg,ns,0.685275645,Zeb2,Zeb2_Exon,2,45001694,45001743,45001742,45001743,50,+,TCATTCTTCTCGTGGCGGTACTTGATGTGCTCCTTCAGTGATGTCAAGCG,"Exon (Zeb2-212/Zeb2, exon 7 of 11)",2,44983632,45117395,133764,2,Zeb2-212,115652,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-227;Zeb2-216;Zeb2-229;Zeb2-218;Zeb2-222,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,21,158,24136,ENSMUSG00000026872,conserved gene but different region,2,45001704,45001759,56,*,56,7,0.607142857,1.375438597,0.125,0.00000289,CpGisland,TRUE,U12,Tr-I
3420,cg09276953,0.0000191,0.00000465,4.109529975,0.0000508,gain,ns,-0.0000145,0.0000079,-1.839328817,0.066823007,neg,ns,-0.001820334,0.002313219,-0.786926778,0.431925915,neg,ns,0.364590738,0.0000465,0.0000796,0.58426177,0.559469132,pos,ns,0.06947299,A830031A19Rik,A830031A19Rik_Promoter,11,24074243,24074292,24074243,24074244,50,+,CGACGTGAATATATGTGCATTATTTCAGAAAGTCTGTTAGAAAACTTGTC,Promoter (<=1kb),11,24048955,24075054,26100,2,A830031A19Rik-201,762,A830031A19Rik-201;Bcl11a-201;Bcl11a-203;Bcl11a-205;Bcl11a-202,A830031A19Rik;Bcl11a;Bcl11a;Bcl11a;Bcl11a,0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,9,23,268391,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
14267,cg24850996,0.00000381,0.00000313,1.21715323,0.224471682,gain,ns,0.00000979,0.00000532,1.839164796,0.066847192,pos,ns,0.004595279,0.00155899,2.947600171,0.003445663,pos,ns,2.462727219,-0.00012238,0.0000536,-2.282637491,0.023128678,neg,ns,0.937866519,Chic2,Chic2_Intron,5,75013212,75013261,75013212,75013213,50,+,CGAACCTGAAAAGGGCTGACCTCTCAAACCGCCTCTCAGGTCTATGAAGT,"Intron (Chic2-201/Chic2, intron 3 of 5)",5,74997988,75044774,46787,2,Chic2-201,31513,Chic2-201;Chic2-202,Chic2;Chic2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,10,74277,ENSMUSG00000029229,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9633,cg21452781,0.0000981,0.00000618,15.8656293,6.52E-42,gain,yes,-0.0000193,0.0000105,-1.839078753,0.066859881,neg,ns,0.003548112,0.003076915,1.153139521,0.24974147,pos,ns,0.602509336,0.000198399,0.000105815,1.874964461,0.061737623,pos,ns,0.245120524,Dbx1,Dbx1_Intron,7,49635242,49635291,49635242,49635243,50,-,CGGAGGAGCTGACCAATTGGTCATGGTGCTGAAACCTTTGTGGGGAATCG,"Intron (Dbx1-201/Dbx1, intron 2 of 3)",7,49631499,49636849,5351,2,Dbx1-201,1558,Dbx1-201,Dbx1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,18,13172,ENSMUSG00000030507,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
1506,cg02257137,0.00000194,0.00000551,0.352085452,0.725013403,gain,ns,-0.0000172,0.00000935,-1.838795999,0.066901597,neg,ns,-0.008593821,0.002740227,-3.136171171,0.00187587,neg,ns,2.726797167,0.000175291,0.0000942,1.860128346,0.063814297,pos,ns,0.075263151,Maml2,Maml2_Promoter,9,13297047,13297096,13297095,13297096,50,+,CTGGACATGACTCGGTGCAATTTGCTGGAAGTTTGTAAGTTTGACCATCG,Promoter (<=1kb),9,13297957,13709388,411432,1,Maml2-202,-861,Ccdc82-206;Ccdc82-201;Maml2-202,Ccdc82;Ccdc82;Maml2,50079;50068;-861,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,3,270118,ENSMUSG00000031925,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19202,cg20009013,0.0000267,0.0000039,6.834562493,4.37E-11,gain,yes,0.0000122,0.00000663,1.838704435,0.06691511,pos,ns,0.005472788,0.001941113,2.819407578,0.005120928,pos,ns,2.290651336,-0.0000335,0.0000668,-0.502385796,0.615752843,neg,ns,0.096283098,Wnt10b,Wnt10b_Intron,15,98776050,98776099,98776098,98776099,50,-,TGGCTCCTGGGAACCCCAGCAATTAGGGGAGCAGATTTAACCCTTAAACG,"Intron (Wnt10b-206/Wnt10b, intron 2 of 3)",15,98770712,98778143,7432,2,Wnt10b-206,2044,Wnt10b-206;Wnt10b-201;Wnt10b-203;Wnt10b-204;Wnt10b-202;Wnt10b-207;Wnt10b-205,Wnt10b;Wnt10b;Wnt10b;Wnt10b;Wnt10b;Wnt10b;Wnt10b,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,4,22410,ENSMUSG00000022996,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
22356,cg24851501,0.0000244,0.0000117,2.091108086,0.037332242,gain,ns,0.0000365,0.0000199,1.838704118,0.066915156,pos,ns,0.010889986,0.00581672,1.872186863,0.062122081,pos,ns,1.206754003,-0.000341259,0.000200037,-1.705985329,0.089012391,neg,ns,0.250036771,Wscd2,Wscd2_fiveUTR,5,113550920,113550969,113550920,113550921,50,-,CGGAATGATCCCACTATGGCCAAGCTCTGGTTCAAATTCCAGCGGTACTT,5' UTR,5,113490447,113589725,99279,1,Wscd2-201,60473,Wscd2-201;Wscd2-205;Wscd2-203,Wscd2;Wscd2;Wscd2,0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,1,320916,ENSMUSG00000063430,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20303,cg15354349,-0.00000781,0.00000256,-3.050255036,0.002483881,loss,ns,0.000008,0.00000435,1.838641621,0.066924381,pos,ns,0.002391439,0.001274993,1.875648869,0.061643196,pos,ns,1.210114852,-0.000106932,0.0000438,-2.438762039,0.01529864,neg,ns,0.947008416,Unc79,Unc79_Exon,12,102991340,102991389,102991388,102991389,50,-,TTTTATCTAGTTGCTTCCAAGATCCGGTACTTGCAGGAATATCATAACCG,"Exon (Unc79-202/Unc79, exon 2 of 49)",12,102948859,103184001,235143,1,Unc79-202,42481,Unc79-202;Unc79-208,Unc79;Unc79,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,24,217843,ENSMUSG00000021198,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1844,cg27071972,0.000015,0.00000536,2.794339353,0.005524494,gain,ns,-0.0000168,0.00000911,-1.838330701,0.06697029,neg,ns,-0.002252671,0.002669456,-0.843869122,0.39939325,neg,ns,0.398599279,0.0000432,0.0000918,0.470351766,0.63843446,pos,ns,0.852051314,Gli3,Gli3_Intron,13,15543840,15543889,15543840,15543841,50,+,CGGGAGGAAAAAGGACTTTGAAACTTGAAAGGAAAGAGCTTGCTTTCAAC,"Intron (Gli3-202/Gli3, intron 2 of 11)",13,15463235,15715091,251857,1,Gli3-202,80605,Gli3-202;Gli3-204;Gli3-203;Gli3-201,Gli3;Gli3;Gli3;Gli3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,19,21,14634,ENSMUSG00000021318,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16569,cg25093813,0.0000832,0.000011,7.541282626,5.19E-13,gain,yes,-0.0000344,0.0000187,-1.83827834,0.066978023,neg,ns,0.011131947,0.00548998,2.027684668,0.043447542,pos,ns,1.362034786,0.00000643,0.0001888,0.034067886,0.972844942,pos,ns,0.290292046,Rpl31-ps16,Rpl31-ps16_Intergenic_upstream,17,85487197,85487246,85487245,85487246,50,+,TACCTAACTGAGCCTTTCAGACAGGACAACGGATGCACAAAAGCTCGACG,Distal Intergenic,17,85498633,85499008,376,1,Rpl31-ps16-201,-11387,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,13,668850,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
3040,cg16157644,-0.0000275,0.00000642,-4.290889694,0.0000238,loss,ns,0.00002,0.0000109,1.838121262,0.067001229,pos,ns,-0.001004507,0.003194952,-0.314404365,0.753425432,neg,ns,0.122959724,0.000110375,0.000109874,1.004561643,0.315891444,pos,ns,0.823291475,Lrmda,Lrmda_Intron,14,22458175,22458224,22458175,22458176,50,-,CGGGAAAGTGGCTTTAATACCCTGAAAAGCAAAGGAATCCGCCTGTCAGC,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,438463,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206;Lrmda-202,Lrmda;Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3333,cg03727787,-0.000000675,0.00000468,-0.144081036,0.885530098,loss,ns,0.0000146,0.00000795,1.838114012,0.0670023,pos,ns,0.004979285,0.002330488,2.136584261,0.033414542,pos,ns,1.476064489,-0.000228471,0.0000801,-2.850714565,0.004654592,neg,ns,0.897762514,Gm11890,Gm11890_Intergenic_downstream,4,23628763,23628812,23628811,23628812,50,+,TGTGCCTGCTGGCTTTTCAATAAAAATCAATTATGCCTTAAATGCGAGCG,Distal Intergenic,4,23659928,23660344,417,2,Gm11890-201,31532,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,32,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2674,cg20412383,-0.00000171,0.00000558,-0.306723005,0.759260136,loss,ns,-0.0000174,0.00000948,-1.837990108,0.067020609,neg,ns,-0.006917936,0.002778038,-2.490223679,0.013289742,neg,ns,1.876483453,0.000114216,0.0000955,1.195517879,0.232798471,pos,ns,0.060852734,Zfand5,Zfand5_Intron,19,21274333,21274382,21274381,21274382,50,+,CTCCATCCAGCTCAGCTTGTCACATTGCAGCCTTGTGACAGGCTGAAGCG,"Intron (Zfand5-205/Zfand5, intron 1 of 5)",19,21272278,21286840,14563,1,Zfand5-205,2055,Zfand5-205;Zfand5-204;Zfand5-201;Zfand5-203;Zfand5-202,Zfand5;Zfand5;Zfand5;Zfand5;Zfand5,0;0;0;-1598;-1658,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,22682,ENSMUSG00000024750,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
5747,cg01385512,0.000193202,0.0000145,13.36231059,1.79E-32,gain,yes,-0.0000451,0.0000246,-1.837970864,0.067023453,neg,ns,-0.000155731,0.007196259,-0.02164051,0.982748641,neg,ns,0.007557548,-0.0000726,0.000247479,-0.293295108,0.769492836,neg,ns,0.463863518,Kctd15,Kctd15_Exon,7,34652887,34652936,34652887,34652888,50,-,CGCCCGAGCAGAGAGAAGTGAGCAGAATGCCACGCTCATTTACACACAAA,"Exon (Kctd15-204/Kctd15, exon 1 of 2)",7,34639014,34654398,15385,2,Kctd15-202,1462,Kctd15-202;Kctd15-203;Kctd15-201;Kctd15-206;Kctd15-208;Kctd15-204;Kctd15-205;Kctd15-207,Kctd15;Kctd15;Kctd15;Kctd15;Kctd15;Kctd15;Kctd15;Kctd15,0;0;0;-4143;0;0;0;3796,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,25,233107,ENSMUSG00000030499,conserved gene but different region,7,34652754,34652920,167,*,167,14,0.694610778,0.696870343,0.083832335,6.26E-10,CpGisland,TRUE,U13,Hc-P
15041,cg12743986,0.00000559,0.00000397,1.406769214,0.160497545,gain,ns,0.0000124,0.00000675,1.837922679,0.067030575,pos,ns,0.001791002,0.00197725,0.905804815,0.365742646,pos,ns,0.436824398,0.0000208,0.000068,0.306581877,0.759367467,pos,ns,0.917792429,Gphn,Gphn_Exon,12,78590620,78590669,78590668,78590669,50,+,ACAGTCCTGGAGATGACTCCGGTGCTTGGGACAGAAATCATCAATTACCG,"Exon (Gphn-201/Gphn, exon 12 of 24)",12,78226379,78684772,458394,1,Gphn-201,364241,Gphn-201;Gphn-202,Gphn;Gphn,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,11,268566,ENSMUSG00000047454,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7743,cg08474766,-0.000000541,0.00000425,-0.127356095,0.898741135,loss,ns,-0.0000133,0.00000722,-1.837872445,0.067038,neg,ns,-0.003230391,0.002113798,-1.528240074,0.127472624,neg,ns,0.894583073,0.000103838,0.0000727,1.428436687,0.154172943,pos,ns,0.91160774,Clta,Clta_Exon,4,44032480,44032529,44032528,44032529,50,+,GACTTTAACCCCAAGTCTAGCAAGCAGGCCAAAGATGTCTCCCGCATGCG,"Exon (Clta-202/Clta, exon 6 of 6)",4,44004452,44032846,28395,1,Clta-202,28028,Clta-202;Clta-203;Clta-206;Clta-204;Clta-205;Clta-201;Gne-201;Gne-214;Gne-202;Gne-208;Gne-209,Clta;Clta;Clta;Clta;Clta;Clta;Gne;Gne;Gne;Gne;Gne,0;0;0;0;0;0;51648;22768;40249;34391;34431,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,6,12757,ENSMUSG00000028478,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
945,cg15839373,0.00000975,0.00000607,1.604556768,0.109609624,gain,ns,0.000019,0.0000103,1.837719541,0.067060605,pos,ns,-0.000402691,0.003022931,-0.133212156,0.894112029,neg,ns,0.048608062,0.0000337,0.000103958,0.324300294,0.745929406,pos,ns,0.765458117,Gata3,Gata3_Promoter,2,9898004,9898053,9898052,9898053,50,-,CGATGATAGCACTAAGCTATTTCCCTCTCTGCAAGGAGACCATTATTCCG,Promoter (8-9kb),2,9874702,9890034,15333,2,Gata3-202,-8019,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,12,21,14462,ENSMUSG00000015619,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
406,cg22171829.2,-0.0000013,0.0000108,-0.12067418,0.904027286,loss,ns,-0.0000336,0.0000183,-1.837538837,0.067087329,neg,ns,0.008371254,0.005350396,1.564604697,0.118695839,pos,ns,0.925564504,-0.000201158,0.000184,-1.093250896,0.275132464,neg,ns,0.097368469,Pdk4,Pdk4_Exon,6,5496029,5496078,5496077,5496078,50,+,TCACCAAAGTCCAGTAGCTGCTTCATGGACAGCGGGGACGGGCTGTAGCG,Promoter (<=1kb),6,5483351,5496309,12959,2,Pdk4-201,231,Pdk4-201;Pdk4-203;Pdk4-202,Pdk4;Pdk4;Pdk4,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,27273,ENSMUSG00000019577,conserved gene and region,6,5495996,5496279,284,*,284,25,0.690140845,0.744234801,0.088028169,6.38E-18,CpGisland,TRUE,U1,Pr-A
24845,cg10167695,-0.0000108,0.00000344,-3.138263488,0.001862944,loss,ns,0.0000107,0.00000584,1.837156714,0.067143868,pos,ns,0.003001208,0.001710646,1.754429429,0.080344951,pos,ns,1.095041409,-0.000156734,0.0000588,-2.664224781,0.008120244,neg,ns,0.922002666,Gm4410,Gm4410_Intron,3,128881859,128881908,128881859,128881860,50,+,CGCCATACAGTCCCAAACCATAGTGCATGCTGGTAATGCTAAATTTGATC,"Intron (Gm43824-201/Gm43824-201, intron 4 of 4)",3,128839836,128840521,686,1,Gm4410-201,42023,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,13,100043393,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2956,cg18640125,0.0000296,0.00000256,11.57814342,5.27E-26,gain,yes,-0.00000798,0.00000435,-1.837083483,0.067154707,neg,ns,-0.000307468,0.001273375,-0.241458791,0.809359187,neg,ns,0.0918587,0.0000156,0.0000438,0.356795348,0.721487758,pos,ns,0.06950623,Igf2bp2,Igf2bp2_Intron,16,22161580,22161629,22161628,22161629,50,-,GCCAATTTGAAAGGATGAGCTCATTTGAAACTCAAGCTGCAGGGCTGGCG,"Intron (Igf2bp2-201/Igf2bp2, intron 1 of 15)",16,22059009,22163299,104291,2,Igf2bp2-201,1670,Igf2bp2-201;Igf2bp2-206;Igf2bp2-202;Igf2bp2-204;Igf2bp2-205,Igf2bp2;Igf2bp2;Igf2bp2;Igf2bp2;Igf2bp2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,5,319765,ENSMUSG00000033581,conserved gene and region,16,22161628,22162270,643,*,643,63,0.68273717,0.840889276,0.097978227,2.15E-47,CpGisland,TRUE,U3,Pr-B
2664,cg00403457,-0.000000554,0.000000921,-0.601723682,0.547797881,loss,ns,0.00000287,0.00000156,1.836889813,0.067183382,pos,ns,0.001011643,0.000458206,2.207834985,0.027987723,pos,ns,1.553032434,-0.0000304,0.0000158,-1.931497765,0.054332854,neg,ns,0.025084619,Ptpn12,Ptpn12_Exon,5,21055663,21055712,21055663,21055664,50,-,CGAAGTTGTCCTCCCCATTGTGGTCAGGACTCTTCATGGCCTGGACCCTC,Promoter (<=1kb),5,20986645,21055911,69267,2,Ptpn12-201,199,Ptpn12-201;Ptpn12-206;Ptpn12-207;Ptpn12-203,Ptpn12;Ptpn12;Ptpn12;Ptpn12,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,19248,ENSMUSG00000028771,conserved gene and region,5,21055153,21055689,537,*,537,69,0.722532589,0.98492823,0.12849162,6.67E-61,CpGisland,TRUE,U1,Pr-A
16954,cg19563147,0.0000813,0.0000136,5.971532559,6.43E-09,gain,yes,0.0000425,0.0000231,1.836849319,0.067189378,pos,ns,0.020065847,0.006778095,2.960396142,0.003309523,pos,ns,2.480234627,-0.000355508,0.000233098,-1.525142201,0.128243167,neg,ns,0.549999012,Zfp423,Zfp423_threeUTR,8,87661891,87661940,87661939,87661940,50,-,AGTTGCACTGAAACCGATTATATTCATTACATAGTTTTAATCACTGTCCG,3' UTR,8,87661810,87804439,142630,2,Zfp423-203,142499,Zfp423-203;Zfp423-202;Zfp423-201,Zfp423;Zfp423;Zfp423,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,53,94187,ENSMUSG00000045333,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
26584,cg07608115,0.00000901,0.0000411,0.219120796,0.82670015,gain,ns,-0.000128233,0.0000698,-1.836013942,0.067313188,neg,ns,0.024127264,0.020461733,1.179140773,0.23924631,pos,ns,0.621154751,-0.000552023,0.000703677,-0.784482714,0.433355966,neg,ns,0.929602955,Casz1,Casz1_Intron,4,148932494,148932543,148932494,148932495,50,-,CGGCCAGAACATTTAGGAAATTGATTTTCCTGGCATTGATGAACTCGTTT,"Intron (Casz1-201/Casz1, intron 5 of 15)",4,148804429,148945129,140701,1,Casz1-201,128065,Casz1-201;Casz1-202;Casz1-206;Casz1-204,Casz1;Casz1;Casz1;Casz1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,94,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1051,cg21143166,-0.00000241,0.00000415,-0.580400096,0.562066488,loss,ns,0.0000129,0.00000705,1.835876886,0.067333518,pos,ns,0.004211259,0.002065605,2.03875363,0.042322737,pos,ns,1.373426256,-0.000127925,0.000071,-1.800844782,0.072699158,neg,ns,0.920311754,Ints8,Ints8_Exon,4,11239422,11239471,11239422,11239423,50,+,CGCTTCTCATCTATGGTACAATGAAGAGATAATGAACCTATCTGTAAAGT,"Exon (Ints8-201/Ints8, exon 8 of 28)",4,11199158,11254258,55101,2,Ints8-201,14787,Ints8-201;Ints8-206;Ints8-202;Ints8-203;Ints8-208,Ints8;Ints8;Ints8;Ints8;Ints8,0;-3864;0;0;-3454,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,72656,ENSMUSG00000040738,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14394,cg12046414,-0.00000216,0.00000286,-0.753131753,0.451942312,loss,ns,0.00000893,0.00000486,1.83579686,0.067345391,pos,ns,0.002844609,0.001424653,1.996702745,0.046731611,pos,ns,1.330389248,0.0000316,0.000049,0.644614916,0.519653477,pos,ns,0.050088261,Asic4,Asic4_fiveUTR,1,75450535,75450584,75450583,75450584,50,-,CAGGGGCTGACAGCTGTGCTGGTGCTGATAAGGGAAGCCACAAGGAGACG,Promoter (<=1kb),1,75450436,75474340,23905,1,Asic4-202,99,Asic4-202;Asic4-201,Asic4;Asic4,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,11,241118,ENSMUSG00000033007,conserved gene but different region,1,75450377,75450757,381,*,381,30,0.669291339,0.70625309,0.078740158,6.14E-20,CpGisland,TRUE,U3,Pr-B
14930,cg08609675,0.0000391,0.00000436,8.950987024,3.31E-17,gain,yes,0.0000136,0.00000741,1.835724811,0.067356083,pos,ns,0.009229009,0.002172226,4.248641572,0.0000285,pos,ns,4.545494741,-0.000101044,0.0000747,-1.352610738,0.17716578,neg,ns,0.087286776,Nr2f1,Nr2f1_Exon,13,78181651,78181700,78181699,78181700,50,+,CCAATAAAATTGGTCTCAGCATGGAGCGTAATTGCAACAAAGTGCCGCCG,"Exon (3110006O06Rik-201/3110006O06Rik-201, exon 2 of 2)",13,78189872,78190443,572,2,Nr2f1-204,8743,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,25,55,13865,ENSMUSG00000069171,conserved gene and region,13,78181696,78181859,164,*,164,10,0.475609756,1.114130435,0.06097561,0.00000612,CpGisland,TRUE,U13,Hc-P
26286,cg02809805,-0.0000019,0.00000151,-1.256870266,0.209746799,loss,ns,0.00000472,0.00000257,1.835713471,0.067357766,pos,ns,0.000778332,0.000753742,1.032622953,0.3025853,pos,ns,0.519152174,0.000013,0.0000259,0.50040888,0.617142263,pos,ns,0.963701715,Ralgapa2,Ralgapa2_Intron,2,146279714,146279763,146279714,146279715,50,-,CGGGCAACCTCACTGCCAGGTGGTCGCGCTTCAATTACATTAGCTAGCCA,"Intron (Ralgapa2-202/Ralgapa2, intron 38 of 40)",2,146239879,146512004,272126,2,Ralgapa2-202,232241,Ralgapa2-202;Ralgapa2-211;Ralgapa2-210;Ralgapa2-205;Ralgapa2-208,Ralgapa2;Ralgapa2;Ralgapa2;Ralgapa2;Ralgapa2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,26,241694,ENSMUSG00000037110,conserved gene and region,2,146279575,146279804,230,*,230,14,0.595652174,0.706140351,0.060869565,4.11E-08,CpGisland,TRUE,U11,Tr-P
6509,cg04920811,0.0000876,0.0000218,4.027654789,0.0000709,gain,ns,-0.0000679,0.000037,-1.835711158,0.067358109,neg,ns,0.018087536,0.01083022,1.67009858,0.095909204,pos,ns,1.018139714,-0.000618509,0.00037245,-1.660646851,0.097795446,neg,ns,0.458495596,Rabl3,Rabl3_Exon,16,37567502,37567551,37567550,37567551,50,+,TGTTTTGATCTCTCTTATCTGTTGGTATAATTGCCCAAGGCCTGCTGACG,"Exon (Rabl3-204/Rabl3, exon 2 of 2)",16,37539885,37572385,32501,1,Rabl3-201,27617,Rabl3-201;Rabl3-203;Rabl3-202;Rabl3-204,Rabl3;Rabl3;Rabl3;Rabl3,0;0;27597;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,67657,ENSMUSG00000022827,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11184,cg04915010,-0.00000146,0.00000398,-0.36580224,0.714762139,loss,ns,0.0000124,0.00000677,1.835564553,0.067379868,pos,ns,0.004646427,0.001982057,2.344244906,0.019696721,pos,ns,1.70560606,-0.000139026,0.0000682,-2.03962428,0.042235323,neg,ns,0.920362096,Tmem245,Tmem245_Exon,4,56895210,56895259,56895210,56895211,50,+,CGTGTGCATGCACTCATGTGAAAATATCACACACACTAAATTGCATTGAG,"Exon (Mir32-201/Mir32-201, exon 1 of 1)",4,56866923,56947437,80515,2,Tmem245-201,52178,Tmem245-201;Tmem245-204;Tmem245-203;Tmem245-202;Tmem245-205,Tmem245;Tmem245;Tmem245;Tmem245;Tmem245,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,242474,ENSMUSG00000055296,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23136,cg08189414,0.0000986,0.0000125,7.906697104,4.68E-14,gain,yes,-0.0000389,0.0000212,-1.835401739,0.06740404,neg,ns,0.019779831,0.006209073,3.185633599,0.001591425,pos,ns,2.79821395,-0.000669497,0.00021353,-3.135385498,0.001880746,neg,ns,0.353851187,Rnf220,Rnf220_Intron,4,117317956,117318005,117317956,117317957,50,-,CGCTGTCGACAGGGAGGGACGACTGGCTGGCAGAAATTGAGTTTGCCTCA,"Intron (Rnf220-201/Rnf220, intron 2 of 14)",4,117271463,117497052,225590,2,Rnf220-201,179047,Rnf220-201;Rnf220-202;Rnf220-207,Rnf220;Rnf220;Rnf220,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
5077,cg19308205,-0.00000438,0.0000052,-0.842948365,0.399907233,loss,ns,-0.0000162,0.00000883,-1.83537226,0.067408418,neg,ns,-0.001648383,0.002588164,-0.636892622,0.524664819,neg,ns,0.280118056,-0.000266903,0.000089,-2.998681646,0.002931061,neg,ns,0.835888549,Prrc2b,Prrc2b_Exon,2,32183183,32183232,32183183,32183184,50,+,CGCCTGCAAACCTGCCAAGCTTGAAGTCTGAAAACAAAGGAAACGACCCC,Promoter (<=1kb),2,32183226,32231162,47937,1,Prrc2b-206,0,Prrc2b-201;Prrc2b-202;Prrc2b-206,Prrc2b;Prrc2b;Prrc2b,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,6,227723,ENSMUSG00000039262,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18389,cg04440646,-0.00000649,0.00000352,-1.842394947,0.066372242,loss,ns,-0.000011,0.00000599,-1.835252194,0.067426249,neg,ns,-0.003824867,0.001753656,-2.181082053,0.029928594,neg,ns,1.523913686,-0.0000531,0.0000603,-0.880897677,0.379055639,neg,ns,0.921016079,Pde8b,Pde8b_Exon,13,95085177,95085226,95085225,95085226,50,+,CTTGGCCAATCACTGGGGTGATCTTCACGTGCTGTTGGATGCTGTCCCCG,"Exon (Pde8b-207/Pde8b, exon 9 of 22)",13,95024454,95250336,225883,2,Pde8b-210,165110,Pde8b-210;Pde8b-208;Pde8b-207;Pde8b-201;Pde8b-202;Pde8b-214;Pde8b-204;Pde8b-206;Pde8b-209,Pde8b;Pde8b;Pde8b;Pde8b;Pde8b;Pde8b;Pde8b;Pde8b;Pde8b,0;0;0;0;0;0;0;0;137840,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,218461,ENSMUSG00000021684,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15756,cg20422755,-0.000131822,0.0000118,-11.13310456,1.92E-24,loss,yes,0.0000369,0.0000201,1.835231823,0.067429274,pos,ns,-0.002768399,0.005893158,-0.469764878,0.63885328,neg,ns,0.194598871,-0.000410936,0.000202665,-2.027657883,0.043450295,neg,ns,0.587967167,Rgs6,Rgs6_threeUTR,12,83150179,83150228,83150227,83150228,50,+,GCCTAGTGCTGCTGGCGCAGAGTCAGAATGGCCGCTGCATTTCACCCCCG,3' UTR,12,82616636,83157971,541336,1,Rgs6-209,533543,Rgs6-209;Rgs6-203;Rgs6-216;Rgs6-222;Rgs6-208;Rgs6-205;Rgs6-206;Rgs6-204;Rgs6-207;Rgs6-220,Rgs6;Rgs6;Rgs6;Rgs6;Rgs6;Rgs6;Rgs6;Rgs6;Rgs6;Rgs6,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,5,50779,ENSMUSG00000021219,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25835,cg09264973,0.00000766,0.00000733,1.045972113,0.29638879,gain,ns,0.0000228,0.0000124,1.835224912,0.067430301,pos,ns,0.006266484,0.003645879,1.718785447,0.086651778,pos,ns,1.062222522,-0.000134852,0.000125381,-1.075529968,0.282973875,neg,ns,0.111044028,Uncx,Uncx_Intergenic_downstream,5,139599912,139599961,139599960,139599961,50,+,CTCCAGTGCCCTCCCCAATAAAACTTTTCATATCCTTATAAACGAACTCG,Distal Intergenic,5,139543898,139545268,1371,1,Uncx-202,56014,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,59,88,22255,ENSMUSG00000029546,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
11067,cg25848733,-0.00000198,0.00000126,-1.572363954,0.116886207,loss,ns,-0.00000393,0.00000214,-1.83509605,0.067449443,neg,ns,0.000509994,0.000627425,0.812835633,0.416936101,pos,ns,0.379930499,-0.0000165,0.0000216,-0.76403591,0.445426975,neg,ns,0.968648708,Gramd3,Gramd3_Exon,18,56485379,56485428,56485427,56485428,50,+,ACAAGTGTTGGTAACAGTCCCAATCCATCTTCTGCTGAAAACAGTTTCCG,"Exon (Gramd3-203/Gramd3, exon 9 of 15)",18,56400337,56503564,103228,1,Gramd3-203,85042,Gramd3-203;Gramd3-204;Gramd3-202;Gramd3-201;Gramd3-205,Gramd3;Gramd3;Gramd3;Gramd3;Gramd3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,107022,ENSMUSG00000001700,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20207,cg16561874,0.000169468,0.00000749,22.63060775,1.27E-67,gain,yes,-0.0000233,0.0000127,-1.834994959,0.067464464,neg,ns,0.00981566,0.003727074,2.633610054,0.008871998,pos,ns,2.051978578,-0.0000468,0.000128174,-0.365043603,0.715327778,neg,ns,0.091521776,Unc79,Unc79_fiveUTR,12,102949355,102949404,102949403,102949404,50,-,TTCCTAACCTTCCGGGACCGAATTCTGCAATTTGATGTGCGTTTTGTCCG,Promoter (<=1kb),12,102948859,103184001,235143,1,Unc79-202,496,Unc79-202;Unc79-208,Unc79;Unc79,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,12,24,217843,ENSMUSG00000021198,conserved gene and region,12,102948810,102949512,703,*,703,59,0.644381223,0.809149434,0.083926031,2.91E-40,CpGisland,TRUE,NA,NRS
23991,cg01329441,0.00000223,0.00000232,0.959896712,0.337855268,gain,ns,-0.00000724,0.00000394,-1.834494898,0.067538805,neg,ns,-0.001366574,0.00115571,-1.182453991,0.237931752,neg,ns,0.623547597,-0.0000488,0.0000397,-1.226647645,0.220885898,neg,ns,0.954486775,Atxn2,Atxn2_Exon,5,121777948,121777997,121777948,121777949,50,-,CGGGAAGCAAGGGCAAACCAGTTAGCAGAAGAAATTGAGTCAAGTGCCCA,"Exon (Atxn2-201/Atxn2, exon 8 of 25)",5,121711609,121814950,103342,1,Atxn2-201,66339,Atxn2-201;Atxn2-220;Atxn2-209;Atxn2-208;Atxn2-219,Atxn2;Atxn2;Atxn2;Atxn2;Atxn2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,16,20239,ENSMUSG00000042605,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15399,cg07890174,0.00000478,0.0000171,0.28029834,0.77943558,gain,ns,0.0000532,0.000029,1.834351512,0.067560133,pos,ns,0.029763356,0.008494064,3.504018247,0.000525794,pos,ns,3.279183974,-0.001098307,0.00029211,-3.759907022,0.000203137,neg,ns,0.812593048,Gria2,Gria2_threeUTR,3,80691394,80691443,80691442,80691443,50,-,CTTGTTCATTCAGTTTTAGTACTGCGAGGTTAACCGCATTTCTTGAAACG,3' UTR,3,80681450,80802835,121386,2,Gria2-201,111392,Gria2-201;Gria2-202;Gria2-203;Gria2-206,Gria2;Gria2;Gria2;Gria2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,12,19,14800,ENSMUSG00000033981,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7632,cg25946283,0.000107947,0.0000157,6.862985951,3.68E-11,gain,yes,0.000049,0.0000267,1.83430754,0.067566675,pos,ns,0.064895709,0.007828439,8.289738469,3.49E-15,pos,yes,14.4577641,-0.002069031,0.000269219,-7.685296749,2.03E-13,neg,yes,0.241017012,Zbtb20,Zbtb20_Intron,16,43506585,43506634,43506585,43506586,50,+,CGACGTGTCCTGCACTATCAGATATCATATGACTTTTTATTTAGATTCCT,"Intron (Zbtb20-211/Zbtb20, intron 4 of 4)",16,42907542,43569781,662240,1,Zbtb20-211,599043,Zbtb20-211;Zbtb20-217;Zbtb20-204;Zbtb20-215;Zbtb20-201;Zbtb20-203;Zbtb20-214;Zbtb20-213;Zbtb20-219;Zbtb20-216;Zbtb20-208;Zbtb20-207;Zbtb20-220;Zbtb20-206;Zbtb20-221;Zbtb20-202;Zbtb20-205,Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,98,56490,ENSMUSG00000022708,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
13527,cg14805279,-0.0000127,0.00000648,-1.962569863,0.050590287,loss,ns,0.0000202,0.000011,1.834275106,0.067571501,pos,ns,-0.000873236,0.003226541,-0.270641472,0.786846899,neg,ns,0.104109762,-0.000133299,0.00011096,-1.201319325,0.230544365,neg,ns,0.835071475,Adamts16,Adamts16_Intergenic_upstream,13,71165702,71165751,71165702,71165703,50,-,CGGCTGGCTATGACAGCAGGCACTTAATTTGCATGTTCGACAGACAACAA,Distal Intergenic,13,70727802,70841811,114010,2,Adamts16-201,-323940,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,7,271127,ENSMUSG00000049538,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12695,cg23136821,0.00000254,0.00000532,0.476463236,0.634080045,gain,ns,0.0000166,0.00000904,1.83417958,0.067585716,pos,ns,0.007506224,0.002648762,2.833861464,0.004900595,pos,ns,2.309751165,-0.000254792,0.0000911,-2.797124473,0.005478274,neg,ns,0.901290535,Gm6555,Gm6555_Intergenic_upstream,3,66734864,66734913,66734912,66734913,50,+,TGAAGCAAAATCATTTGAAAAGACTACTACTTTATATCATGATGCATACG,Distal Intergenic,3,66882350,66883138,789,1,Gm6555-201,-147437,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,10,625115,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10637,cg21816821,0.00000214,0.00000598,0.358490457,0.720220315,gain,ns,0.0000186,0.0000102,1.833662128,0.067662757,pos,ns,0.002824562,0.002977195,0.948732365,0.343495752,pos,ns,0.46407863,0.0000736,0.000102386,0.719300559,0.472497634,pos,ns,0.765275792,Slc7a8,Slc7a8_Exon,14,54758532,54758581,54758532,54758533,50,+,CGATGACAGCCTGGTTGGTGGGGTAGATCACCAGCACAGCAATCCACAGC,"Exon (Slc7a8-201/Slc7a8, exon 3 of 11)",14,54722209,54781930,59722,2,Slc7a8-201,23349,Slc7a8-201;Slc7a8-202,Slc7a8;Slc7a8,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,50934,ENSMUSG00000022180,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
361,cg27349607,-0.00000599,0.00000191,-3.140346296,0.001850159,loss,ns,0.00000594,0.00000324,1.833656339,0.06766362,pos,ns,0.001139826,0.000948883,1.201228671,0.230579467,pos,ns,0.637179368,-0.0000693,0.0000326,-2.123728722,0.034484475,neg,ns,0.949221548,Zfhx4,Zfhx4_Exon,3,5242315,5242364,5242315,5242316,50,+,CGGGAAACCATTTACAGCCGATCAGGCTTTCCCAAATACCTCAGCATTAG,"Exon (Zfhx4-203/Zfhx4, exon 2 of 11)",3,5218526,5413165,194640,1,Zfhx4-203,23789,Zfhx4-203;Zfhx4-202;Zfhx4-201;Zfhx4-204;Zfhx4-205,Zfhx4;Zfhx4;Zfhx4;Zfhx4;Zfhx4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,23,77,80892,ENSMUSG00000025255,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
172,cg04288071,-0.0000124,0.00000717,-1.725108704,0.08550452,loss,ns,0.0000223,0.0000122,1.833464078,0.067692264,pos,ns,0.010937445,0.003568852,3.064696045,0.002370421,pos,ns,2.625174536,-0.000321617,0.000122733,-2.620468966,0.009213418,neg,ns,0.863648287,Mtmr3,Mtmr3_Exon,11,4528336,4528385,4528336,4528337,50,-,CGGATCAGCTGCTTCCTGGGAAAGATCTGATTGGCCTGGATGCACTCAAG,"Exon (Mtmr3-202/Mtmr3, exon 3 of 18)",11,4480868,4594815,113948,2,Mtmr3-202,66430,Mtmr3-202;Mtmr3-201;Mtmr3-203;Mtmr3-205;Mtmr3-204,Mtmr3;Mtmr3;Mtmr3;Mtmr3;Mtmr3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,4,74302,ENSMUSG00000034354,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27809,cg10108237,-0.000014,0.00000745,-1.882656862,0.060683206,loss,ns,-0.0000232,0.0000127,-1.833389131,0.067703432,neg,ns,-0.001262015,0.003706541,-0.340483222,0.733723269,neg,ns,0.134467708,0.0000338,0.000127468,0.26517827,0.791048378,pos,ns,0.341034791,Esrrg,Esrrg_Intron,1,187997772,187997821,187997772,187997773,50,+,CGCGGCTGGGCCGGTGGGACTGCATATGTAAAGCCCTACTTCATATTAAT,"Intron (Esrrg-204/Esrrg, intron 3 of 3)",1,187608791,188043502,434712,1,Esrrg-204,388981,Esrrg-204;Esrrg-203;Esrrg-201;Esrrg-202,Esrrg;Esrrg;Esrrg;Esrrg,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,60,26381,ENSMUSG00000026610,conserved gene and region,1,187997630,187997784,155,*,155,16,0.729032258,0.779874214,0.103225807,9.51E-13,CpGisland,TRUE,NA,NRS
9182,cg01050866,-0.0000264,0.00000937,-2.817110477,0.005156762,loss,ns,0.0000292,0.0000159,1.83336041,0.067707713,pos,ns,0.012510675,0.004663982,2.682402219,0.007701488,pos,ns,2.113425375,-0.000451929,0.000160394,-2.817619999,0.005148794,neg,ns,0.866702874,Cadm1,Cadm1_Intergenic_upstream,9,47417377,47417426,47417425,47417426,50,-,TGTTGAACTTTCAAAATGGGGTATTATTTTCCATTTACACTTATTTCACG,Distal Intergenic,9,47530173,47853385,323213,1,Cadm1-204,-112796,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,18,77,54725,ENSMUSG00000032076,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5966,cg02255236,0.0000368,0.00000836,4.402876819,0.0000147,gain,ns,-0.000026,0.0000142,-1.833195919,0.067732232,neg,ns,-0.000992963,0.004158803,-0.238761623,0.811448191,neg,ns,0.090739204,0.0000348,0.000143021,0.243385081,0.807868075,pos,ns,0.706472688,Slit3,Slit3_Exon,11,35612397,35612446,35612397,35612398,50,+,CGCATCAGCCAGATCAAGAGCAAGAAGTTCCGCTGCTCAGGTAATCAGGT,"Exon (Slit3-201/Slit3, exon 14 of 36)",11,35121224,35708507,587284,1,Slit3-201,491173,Slit3-201;Slit3-202,Slit3;Slit3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,21,20564,ENSMUSG00000056427,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9554,cg02246073,0.0000057,0.00000422,1.352034791,0.17734975,gain,ns,-0.0000131,0.00000716,-1.833063751,0.067751938,neg,ns,-0.003808059,0.002098045,-1.815050667,0.070482387,neg,ns,1.151919399,0.0000418,0.0000722,0.57928434,0.562818032,pos,ns,0.891861479,Mbd5,Mbd5_Exon,2,49279665,49279714,49279665,49279666,50,+,CGTTCAATGTTGGCGACTTGGTCTGGGGCCAAATCAAAGGACTGACTTCC,"Exon (Mbd5-203/Mbd5, exon 12 of 15)",2,48949523,49316972,367450,1,Mbd5-203,330142,Mbd5-203;Mbd5-201;Mbd5-204;Mbd5-206;Mbd5-212;Mbd5-214;Mbd5-213,Mbd5;Mbd5;Mbd5;Mbd5;Mbd5;Mbd5;Mbd5,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,10,109241,ENSMUSG00000036792,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19751,cg19697720,-0.00000387,0.00000405,-0.95404998,0.340801674,loss,ns,0.0000126,0.00000688,1.833000882,0.067761314,pos,ns,0.001456772,0.002016831,0.722307645,0.470649873,pos,ns,0.327302054,0.0000254,0.0000694,0.365497419,0.714989394,pos,ns,0.953339427,Pccb,Pccb_Exon,9,101031864,101031913,101031912,101031913,50,-,TATCAGCAGCCATTCCAAAATCTGCACATCTGTGTTCCACAAACATGTCG,"Exon (Pccb-204/Pccb, exon 2 of 14)",9,100982032,101034877,52846,2,Pccb-204,2964,Pccb-204;Pccb-201;Pccb-202;Pccb-203;Pccb-206,Pccb;Pccb;Pccb;Pccb;Pccb,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,66904,ENSMUSG00000032527,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19019,cg17900644,-0.00000718,0.00000422,-1.702103701,0.089738445,loss,ns,0.0000131,0.00000717,1.832774272,0.067795117,pos,ns,0.003765166,0.002100709,1.79233112,0.074054944,pos,ns,1.130445941,-0.000223464,0.0000722,-3.093216026,0.002160229,neg,ns,0.894178243,Dach1,Dach1_Promoter,14,98176010,98176059,98176010,98176011,50,+,CGGCTATGCTATAATATCCATTAAGCAGAAAGAAAAATAAGCTGGCTGAT,Promoter (6-7kb),14,97825866,98169765,343900,2,Dach1-203,-6245,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,8,76,13134,ENSMUSG00000055639,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1804,cg10918171,-0.0000953,0.0000148,-6.448150649,4.34E-10,loss,yes,0.000046,0.0000251,1.832661367,0.067811963,pos,ns,0.018569615,0.007355376,2.524631568,0.012080784,pos,ns,1.917904891,0.000575101,0.000252951,2.273566923,0.023675712,pos,ns,0.356955658,Dll1,Dll1_Promoter,17,15377007,15377056,15377055,15377056,50,+,ATTAAGGCAGCCTGTTATTGTGCGAGGCTGAATCAGTGGCTCTTTGTGCG,Promoter (<=1kb),17,15374794,15376872,2079,2,Dll1-205,-135,Dll1-201;Dll1-203;Dll1-202;Dll1-205,Dll1;Dll1;Dll1;Dll1,-1031;-2935;-1907;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,9,9,13388,ENSMUSG00000014773,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17490,cg20465698,-0.00000202,0.00000258,-0.78238031,0.434588307,loss,ns,-0.00000802,0.00000438,-1.832422095,0.067847677,neg,ns,-0.002309763,0.001282867,-1.800469236,0.072758529,neg,ns,1.138116088,0.000129582,0.0000441,2.937196307,0.003560107,pos,ns,0.903763993,Chtop,Chtop_Exon,3,90502083,90502132,90502131,90502132,50,+,GGAGCTACTCTCTGAAGTTGGTAGCTGACTAACCTCTACCACCGATTCCG,"Exon (Chtop-201/Chtop, exon 4 of 5)",3,90498956,90509450,10495,2,Chtop-205,7318,Chtop-205;Chtop-201;Chtop-206;Chtop-203;Chtop-202;Chtop-207;Chtop-204;Chtop-209;Chtop-208,Chtop;Chtop;Chtop;Chtop;Chtop;Chtop;Chtop;Chtop;Chtop,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,10,66511,ENSMUSG00000001017,conserved gene but different region,3,90502125,90502239,115,*,115,10,0.643478261,1.033243486,0.086956522,0.000000242,CpGisland,TRUE,U10,Tr-S
20144,cg13871255,-0.0000136,0.0000332,-0.409522883,0.682438799,loss,ns,0.000103305,0.0000564,1.8322676,0.067870746,pos,ns,-0.00391778,0.016517635,-0.237187745,0.812667812,neg,ns,0.090086942,0.000791577,0.00056804,1.39352252,0.164460094,pos,ns,0.565156544,Calcoco1,Calcoco1_Intergenic_upstream,15,102737417,102737466,102737417,102737418,50,+,CGACTTTCCGCGGGACGGCTCCCTGGGGGATGATTAACACTTCATCGTCC,Distal Intergenic,15,102706777,102722178,15402,2,Calcoco1-201,-15239,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,20,29,67488,ENSMUSG00000023055,conserved gene but different region,15,102737359,102737627,269,*,269,21,0.565055762,0.991922739,0.078066915,4.85E-14,CpGisland,TRUE,U11,Tr-P
6723,cg01032683,0.0000112,0.00000337,3.331123605,0.000969522,gain,ns,-0.0000105,0.00000572,-1.831851836,0.067932857,neg,ns,-0.000328215,0.001675842,-0.195850952,0.844855144,neg,ns,0.073217747,0.0000179,0.0000576,0.311327487,0.755760928,pos,ns,0.121630222,Pcdh1,Pcdh1_threeUTR,18,38185952,38186001,38186000,38186001,50,+,TTACACGGGTCTTTCATTGACAGCTCAGCAAACAAACCGGAAACGAACCG,3' UTR,18,38185914,38212053,26140,2,Pcdh1-203,26052,Pcdh1-203;Pcdh1-204,Pcdh1;Pcdh1,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,10,17,75599,ENSMUSG00000051375,conserved gene but different region,18,38185887,38186045,159,*,159,14,0.566037736,1.156363636,0.088050315,3.20E-10,CpGisland,TRUE,U1,Pr-A
17791,cg01587716,0.0000101,0.00000604,1.679870428,0.093989956,gain,ns,0.0000188,0.0000103,1.831670218,0.067960004,pos,ns,0.001977492,0.003004024,0.658281108,0.510846084,pos,ns,0.291709932,-0.0000422,0.000103308,-0.408667484,0.68306586,neg,ns,0.809696971,Dlg2,Dlg2_fiveUTR,7,91672634,91672683,91672682,91672683,50,-,CATCAGTGCAGTATGAATGCATACCTCACCAAGCAACACAGCTGCAGCCG,5' UTR,7,90477231,92449247,1972017,1,Dlg2-217,1195403,Dlg2-217;Dlg2-204;Dlg2-209;Dlg2-201;Dlg2-222;Dlg2-221;Dlg2-220;Dlg2-218;Dlg2-210;Dlg2-219,Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,21,23859,ENSMUSG00000052572,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16424,cg21124488,-0.00000487,0.00000392,-1.24162298,0.215314306,loss,ns,0.0000122,0.00000666,1.831259175,0.068021477,pos,ns,0.006527001,0.001951019,3.345432045,0.00092252,pos,ns,3.035024304,-0.000242626,0.0000671,-3.616140822,0.00034892,neg,ns,0.9034551,Fbxw7,Fbxw7_Exon,3,84976171,84976220,84976219,84976220,50,+,TAGTTTGATGGTATCCATGTGGTGAGTGGATCTCTTGATACATCAATCCG,"Exon (Fbxw7-204/Fbxw7, exon 13 of 14)",3,84815268,84979198,163931,1,Fbxw7-204,160903,Fbxw7-204;Fbxw7-205;Fbxw7-203;Fbxw7-202;Fbxw7-201;Gm37240-203,Fbxw7;Fbxw7;Fbxw7;Fbxw7;Fbxw7;Gm37240,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,10,50754,ENSMUSG00000028086,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21316,cg21762467,-0.00000338,0.00000175,-1.933735237,0.054055811,loss,ns,0.00000543,0.00000297,1.831094181,0.068046166,pos,ns,0.00233646,0.000868955,2.688815861,0.007558443,pos,ns,2.121567677,-0.0000408,0.0000299,-1.364388515,0.173434956,neg,ns,0.066462325,Rbm15,Rbm15_Exon,3,107332346,107332395,107332394,107332395,50,+,CTTCAGAGGCCGGTCATAGAGCACCAGGCGGCCTCTGGCATGCTTGGCCG,"Exon (Rbm15-201/Rbm15, exon 1 of 2)",3,107325421,107333673,8253,2,Rbm15-201,1278,Rbm15-201;Rbm15-202,Rbm15;Rbm15,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,9,229700,ENSMUSG00000048109,conserved gene and region,3,107332208,107332448,241,*,241,23,0.663900415,0.874842172,0.095435685,2.37E-17,CpGisland,TRUE,U1,Pr-A
16222,cg03163284,0.000027,0.0000141,1.91951712,0.055836623,gain,ns,-0.0000438,0.0000239,-1.83109024,0.068046755,neg,ns,-0.026086617,0.00700353,-3.724781477,0.000232205,neg,ns,3.634129326,0.000659336,0.000240851,2.737528984,0.006547795,pos,ns,0.610876164,Bnc2,Bnc2_Intron,4,84615901,84615950,84615949,84615950,50,+,ATCATCTATTTACAGTTGATTTGGTAGTGTCATTTGCAATATTCCCTACG,"Intron (Bnc2-201/Bnc2, intron 1 of 7)",4,84275095,84675034,399940,2,Bnc2-201,59084,Bnc2-201;Bnc2-202;Bnc2-214;Bnc2-215;Bnc2-206;Bnc2-211;Bnc2-217;Bnc2-207;Bnc2-203;Bnc2-209;Bnc2-204;Bnc2-210,Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,91,242509,ENSMUSG00000028487,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9421,cg03076171,0.00000674,0.00000537,1.255208934,0.210348296,gain,ns,-0.0000167,0.00000912,-1.83108685,0.068047263,neg,ns,-0.006935616,0.002671551,-2.596100515,0.009877858,neg,ns,2.00533722,0.000249113,0.0000919,2.711447441,0.007072612,pos,ns,0.868260552,Gm13489,Gm13489_Intergenic_downstream,2,48679629,48679678,48679629,48679630,50,-,CGCAGGTTGGCAAATAGGTTAATTTTAACTTCGCAGATTGCAAGGTGTGT,Distal Intergenic,2,48809585,48810555,971,2,Gm13489-201,130926,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,102633584,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22974,cg23834494,0.00000443,0.00000215,2.057317722,0.040491863,gain,ns,-0.0000067,0.00000366,-1.830860309,0.068081173,neg,ns,0.000458092,0.001072246,0.427226673,0.669510819,pos,ns,0.174242401,0.0000189,0.0000369,0.511850723,0.609119912,pos,ns,0.956579355,Cnot2,Cnot2_fiveUTR,10,116507134,116507183,116507134,116507135,50,+,CGATTTAACTGAGGGGTATTGTTGCTCATCCCCCTCATTGGAAGGCCTAG,5' UTR,10,116485161,116581511,96351,2,Cnot2-210,74328,Cnot2-210;Cnot2-204;Cnot2-212;Cnot2-203;Cnot2-202;Cnot2-213;Cnot2-209;Cnot2-214;Cnot2-215;Cnot2-205;Cnot2-207;Cnot2-211;Cnot2-217;Cnot2-216;Cnot2-206;Cnot2-201;Cnot2-208,Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,TRUE,TRUE,TRUE,FALSE,FALSE,fiveUTR,6,15,72068,ENSMUSG00000020166,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13583,cg20888789,-0.00000165,0.00000356,-0.46266904,0.643926204,loss,ns,0.0000111,0.00000605,1.830839447,0.068084296,pos,ns,0.003758596,0.001771207,2.122053283,0.034626061,pos,ns,1.460596914,-0.000130454,0.0000609,-2.141688276,0.032997731,neg,ns,0.934327601,Hat1,Hat1_Exon,2,71421254,71421303,71421302,71421303,50,-,GTAGGCTACATGACAGTCTATAATTACTATGTGTACCCAGACAAAACCCG,"Exon (Hat1-202/Hat1, exon 7 of 11)",2,71388958,71441622,52665,1,Hat1-202,32296,Hat1-202;Hat1-201;Hat1-204,Hat1;Hat1;Hat1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,11,12,107435,ENSMUSG00000027018,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7549,cg08416404,-0.00001,0.00000724,-1.38561461,0.166860667,loss,ns,0.0000225,0.0000123,1.830638223,0.06811443,pos,ns,0.008786562,0.00360556,2.436948028,0.015374112,pos,ns,1.813209969,-0.000291736,0.000123995,-2.352803676,0.019257162,neg,ns,0.884661445,Zbtb20,Zbtb20_Intron,16,43122487,43122536,43122487,43122488,50,+,CGCCCTGGCTTTAAATTGGAATTTGAATTTGCAAAATGCTAAAGGTTTAT,"Intron (Zbtb20-209/Zbtb20, intron 3 of 7)",16,42875881,43463175,587295,1,Zbtb20-209,246606,Zbtb20-209;Zbtb20-211;Zbtb20-217;Zbtb20-218;Zbtb20-204,Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,98,56490,ENSMUSG00000022708,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2368,cg17242867,0.0000741,0.00000628,11.80640027,8.15E-27,gain,yes,-0.0000195,0.0000107,-1.830466539,0.068140148,neg,ns,0.002416481,0.003124926,0.773292271,0.439938675,pos,ns,0.356607858,0.00012968,0.000107466,1.206709908,0.228463908,pos,ns,0.121447366,Tfap2b,Tfap2b_fiveUTR,1,19209082,19209131,19209130,19209131,50,+,TTGGTGTGTATCCCCCATTTCCAATTATAGATGGATCATTACAGACAGCG,Promoter (<=1kb),1,19208914,19238576,29663,1,Tfap2b-201,168,Tfap2b-201;Tfap2b-204;Tfap2b-202;Tfap2b-205;Tfap2b-203,Tfap2b;Tfap2b;Tfap2b;Tfap2b;Tfap2b,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,40,21419,ENSMUSG00000025927,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
6982,cg26041232,0.0000317,0.00000871,3.638740394,0.000320836,gain,ns,0.0000271,0.0000148,1.830461694,0.068140874,pos,ns,0.005305107,0.00433379,1.224126474,0.221834028,pos,ns,0.653971836,0.000017,0.000149039,0.114364894,0.909022577,pos,ns,0.696398026,Gramd1b,Gramd1b_fiveUTR,9,40333519,40333568,40333567,40333568,50,-,GGGACTTGTCCGAGGAGTGATCTGAGCCCTTCTCCACCATGGTGTCTCCG,Promoter (<=1kb),9,40316747,40333528,16782,2,Gramd1b-209,0,Gramd1b-204;Gramd1b-201;Gramd1b-214;Gramd1b-203;Gramd1b-212;Gramd1b-213;Gramd1b-202;Gramd1b-209;Gramd1b-206;Gramd1b-210;Gramd1b-208;Gramd1b-205,Gramd1b;Gramd1b;Gramd1b;Gramd1b;Gramd1b;Gramd1b;Gramd1b;Gramd1b;Gramd1b;Gramd1b;Gramd1b;Gramd1b,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,5,235283,ENSMUSG00000040111,conserved gene and region,9,40333328,40333676,349,*,349,18,0.598853868,0.577495863,0.051575931,4.06E-09,CpGisland,TRUE,U11,Tr-P
1554,cg19687559,-0.00000693,0.00000554,-1.249858648,0.212293928,loss,ns,-0.0000172,0.00000942,-1.830441549,0.068143893,neg,ns,-0.006488538,0.002758551,-2.352154318,0.019290207,neg,ns,1.714663113,0.0000994,0.0000949,1.047741131,0.295574083,pos,ns,0.873504722,Zfp521,Zfp521_Intron,18,13694599,13694648,13694647,13694648,50,+,TTATGAGTCTGGCTGGCTCCTTCCCCGTTCCCAGAAGCATATACTGTACG,"Intron (Zfp521-201/Zfp521, intron 7 of 7)",18,13687013,13972787,285775,2,Zfp521-201,278139,Zfp521-201;Zfp521-205;Zfp521-204,Zfp521;Zfp521;Zfp521,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,81,225207,ENSMUSG00000024420,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25983,cg19697564,-0.00000067,0.000000986,-0.680051947,0.496979101,loss,ns,0.00000306,0.00000167,1.829875754,0.06822871,pos,ns,0.00154714,0.00049059,3.153629956,0.001770503,pos,ns,2.751903324,-0.0000357,0.0000169,-2.113729905,0.035336861,neg,ns,0.971807597,Pkn2,Pkn2_threeUTR,3,142793899,142793948,142793947,142793948,50,-,ATAGGTGCTTCTGAGGTAAATTCATCATCAAAATTACTAACATCTTCTCG,3' UTR,3,142790902,142882004,91103,2,Pkn2-201,88056,Pkn2-201;Pkn2-207;Pkn2-206;Pkn2-210,Pkn2;Pkn2;Pkn2;Pkn2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,4,109333,ENSMUSG00000004591,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5044,cg13214349,-0.00000117,0.00000148,-0.786405231,0.432230847,loss,ns,0.00000461,0.00000252,1.829460418,0.068291028,pos,ns,0.001319268,0.000737814,1.788077447,0.074740075,pos,ns,1.12644647,-0.00000563,0.0000254,-0.221690108,0.824701095,neg,ns,0.040944157,Hbp1,Hbp1_Promoter,12,31950587,31950636,31950587,31950588,50,+,CGCAGTCTTGATAGTAAACAAGAGTCATAGGGACACGTGTATCAGCTCGT,Promoter (<=1kb),12,31926254,31950535,24282,2,Hbp1-202,-52,Hbp1-202;Hbp1-201;Hbp1-204;Hbp1-208;Hbp1-206;Hbp1-205;Hbp1-203,Hbp1;Hbp1;Hbp1;Hbp1;Hbp1;Hbp1;Hbp1,0;0;0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,3,73389,ENSMUSG00000002996,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
13791,cg11351514,-0.000042,0.00000596,-7.043930446,1.21E-11,loss,yes,-0.0000185,0.0000101,-1.829333069,0.068310145,neg,ns,-0.008395815,0.002965675,-2.830996014,0.004943579,neg,ns,2.305958564,0.000299105,0.000101989,2.932710004,0.003610521,pos,ns,0.907862985,Tcf7l1,Tcf7l1_Intron,6,72711529,72711578,72711577,72711578,50,+,CTAATTTGACCACAAAAACCTGGCCTCTGGTGTTTCTGTTATGAGTATCG,"Intron (Tcf7l1-201/Tcf7l1, intron 3 of 11)",6,72626378,72789254,162877,2,Tcf7l1-201,77676,Tcf7l1-201;Tcf7l1-202;Tcf7l1-204,Tcf7l1;Tcf7l1;Tcf7l1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,3,21415,ENSMUSG00000055799,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2125,cg04193235,0.00000397,0.00000467,0.84950322,0.396256902,gain,ns,0.0000145,0.00000793,1.82910014,0.068345123,pos,ns,0.003617707,0.002323886,1.556748788,0.120550427,pos,ns,0.918831248,0.00000766,0.0000799,0.095803986,0.923738153,pos,ns,0.066269795,Bhlhe22,Bhlhe22_fiveUTR,3,18054281,18054330,18054281,18054282,50,+,CGCCTGCGATTGTTTGTTACCGTTTTAATCCTATTAATTAAAACGTTAAC,Promoter (<=1kb),3,18054174,18057517,3344,1,Bhlhe22-201,107,Bhlhe22-201,Bhlhe22,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,9,22,59058,ENSMUSG00000025128,mapped to different genes,3,18054268,18054363,96,*,96,8,0.458333333,1.590062112,0.083333333,0.00000859,CpGisland,TRUE,U3,Pr-B
20512,cg11563254,0.000096,0.00000832,11.54573791,6.85E-26,gain,yes,-0.0000258,0.0000141,-1.828901244,0.068375002,neg,ns,0.0125133,0.004139266,3.02307245,0.002711097,pos,ns,2.566854922,-0.000546478,0.000142349,-3.839001719,0.000149761,neg,ns,0.769496622,Unc79,Unc79_Exon,12,103183534,103183583,103183582,103183583,50,+,GGTTGCAGTGCACTCAGTTCAAAATGGCCCAGGTGGAGATCCAGTCCTCG,"Exon (Unc79-202/Unc79, exon 49 of 49)",12,102948859,103184001,235143,1,Unc79-202,234675,Unc79-202;Unc79-208;Unc79-201;Unc79-205,Unc79;Unc79;Unc79;Unc79,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,24,217843,ENSMUSG00000021198,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20410,cg15894722,0.0000257,0.0000035,7.349314046,1.78E-12,gain,yes,-0.0000109,0.00000595,-1.828881844,0.068377917,neg,ns,0.001780912,0.001742671,1.021944022,0.307604229,pos,ns,0.512007699,0.0000726,0.0000599,1.211119694,0.226772,pos,ns,0.031872906,Hoxc4,Hoxc4_fiveUTR,15,103034612,103034661,103034612,103034613,50,+,CGGAGGAGTCACATGGTGAAAGTAACTTTACAGGGTCGCTAGCTAGTAGG,5' UTR,15,103018934,103036405,17472,1,Hoxc4-202,15678,Hoxc4-202;Hoxc4-201,Hoxc4;Hoxc4,0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,91,15423,ENSMUSG00000075394,conserved gene but different region,15,103034566,103034693,128,*,128,9,0.53125,1.090909091,0.0703125,0.00000707,CpGisland,TRUE,U3,Pr-B
5310,cg08233123,0.00002,0.00000839,2.381711182,0.017835577,gain,ns,-0.0000261,0.0000143,-1.828661907,0.068410971,neg,ns,0.025489036,0.004175728,6.104093999,3.09E-09,pos,ns,8.510702409,-0.001178235,0.000143603,-8.204809887,6.24E-15,neg,yes,0.782687324,Uvssa,Uvssa_Intron,5,33398685,33398734,33398685,33398686,50,+,CGGGCAATTTGCACGGCCTTCCAGGGAGGGCATTAGCATATAAATAGCAG,"Intron (Uvssa-202/Uvssa, intron 6 of 8)",5,33378549,33410519,31971,1,Uvssa-202,20136,Uvssa-202;Uvssa-201;Uvssa-203;Uvssa-204,Uvssa;Uvssa;Uvssa;Uvssa,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,71101,ENSMUSG00000037355,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16875,cg07256954,0.000158452,0.0000245,6.464962596,3.93E-10,gain,yes,0.0000761,0.0000416,1.828197069,0.068480873,pos,ns,0.04418123,0.012198534,3.621847447,0.000341618,pos,ns,3.46645918,-0.001218037,0.000419507,-2.903498511,0.003955053,neg,ns,0.658010953,Diaph3,Diaph3_Exon,14,86866446,86866495,86866446,86866447,50,+,CGGGAGCCAGCATTCATGTAGTTTCCCATTAGCAATACAAGTTCCAGCAA,"Exon (Diaph3-201/Diaph3, exon 21 of 28)",14,86655367,87141224,485858,2,Diaph3-201,274729,Diaph3-201;Diaph3-202;Diaph3-208;Diaph3-205,Diaph3;Diaph3;Diaph3;Diaph3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,11,56419,ENSMUSG00000022021,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21599,cg03427491,-0.00000328,0.00000426,-0.770170223,0.441785435,loss,ns,0.0000132,0.00000724,1.828173014,0.068484492,pos,ns,0.004654515,0.002120943,2.194550205,0.028937439,pos,ns,1.538539908,-0.000102607,0.0000729,-1.406756897,0.160501196,neg,ns,0.929920982,Zfhx3,Zfhx3_Intron,8,108497884,108497933,108497884,108497885,50,-,CGTGTGTTTTTAATAATGTAAAAATATGTGTAATATGTTTGAAAAACAAC,"Intron (Zfhx3-204/Zfhx3, intron 3 of 15)",8,107942644,108961630,1018987,1,Zfhx3-204,555240,Zfhx3-204,Zfhx3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,114,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17441,cg21460445,-0.0000122,0.00000912,-1.336498236,0.182366573,loss,ns,0.0000283,0.0000155,1.827985349,0.068512731,pos,ns,0.001462966,0.004537346,0.322427738,0.747346013,pos,ns,0.126478278,-0.000238233,0.000156039,-1.526751083,0.127842532,neg,ns,0.643520501,Ankrd17,Ankrd17_Exon,5,90283267,90283316,90283315,90283316,50,-,TCTAGATACTGCTTTTTTAGCTGCTGCTGAGTTTTCAGTTGTAACTCTCG,"Exon (Ankrd17-201/Ankrd17, exon 15 of 34)",5,90227166,90366577,139412,2,Ankrd17-201,83261,Ankrd17-201;Ankrd17-203;Ankrd17-202;Ankrd17-205;Ankrd17-212;Ankrd17-214;Ankrd17-211,Ankrd17;Ankrd17;Ankrd17;Ankrd17;Ankrd17;Ankrd17;Ankrd17,0;0;0;0;0;0;-4745,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,12,81702,ENSMUSG00000055204,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20922,cg27577849,0.0000441,0.00000835,5.282634947,0.00000024,gain,yes,-0.0000259,0.0000142,-1.827974074,0.068514428,neg,ns,0.006383714,0.004156549,1.535820859,0.125602299,pos,ns,0.901002412,-0.0000102,0.000142943,-0.07121058,0.943276079,neg,ns,0.179348286,Pax6,Pax6_Intron,2,105690260,105690309,105690260,105690261,50,+,CGATGAATCCGCCTGTTTAAATGGGGGAGAAAGTTGGGGTTTTAAAACAT,"Intron (Pax6-206/Pax6, intron 7 of 12)",2,105668900,105697364,28465,1,Pax6-206,21360,Pax6-206;Pax6-207;Pax6-210;Pax6-208;Pax6-202;Pax6-205;Pax6-225;Pax6-204;Pax6-201;Pax6-203;Pax6-224;Pax6-219;Pax6-213;Pax6-211;Pax6-222;Pax6-212;Pax6-215;Pax6-223;Pax6-216;Pax6-218,Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;-2174,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,78,18508,ENSMUSG00000027168,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
24211,cg24815937,0.0000771,0.0000109,7.08661596,9.30E-12,gain,yes,-0.0000338,0.0000185,-1.827838615,0.068534818,neg,ns,0.015887662,0.00541189,2.935695435,0.003576901,pos,ns,2.446493116,-0.000688534,0.000186114,-3.699521269,0.000255486,neg,ns,0.111213476,Macf1,Macf1_Intron,4,123527707,123527756,123527755,123527756,50,-,CATCTCACTGCAGTTCAGAAATCACTTGACCTAAAAGCAGACAGAAACCG,"Intron (Macf1-203/Macf1, intron 5 of 97)",4,123349633,123684360,334728,2,Macf1-203,156604,Macf1-203;Macf1-215;Macf1-218;Macf1-217;Macf1-201;Macf1-205;Macf1-202;Macf1-206;Macf1-213;Macf1-212;Macf1-219,Macf1;Macf1;Macf1;Macf1;Macf1;Macf1;Macf1;Macf1;Macf1;Macf1;Macf1,0;0;0;0;0;0;0;0;-59;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,16,11426,ENSMUSG00000028649,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7379,cg15680877,-0.0000127,0.00000713,-1.78067956,0.075944027,loss,ns,-0.0000221,0.0000121,-1.827609969,0.068569246,neg,ns,-0.00836494,0.003549591,-2.356592954,0.01906532,neg,ns,1.719755894,0.000112122,0.00012207,0.918502672,0.359069848,pos,ns,0.843383773,R3hcc1l,R3hcc1l_Intergenic_upstream,19,42483782,42483831,42483830,42483831,50,+,GTCCTTTCAGCAAAGCTTATCTGTAATGGGCTCGGCTCGTTGAGGCCCCG,Distal Intergenic,19,42518759,42592343,73585,1,R3hcc1l-201,-34928,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,13,52013,ENSMUSG00000025184,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24452,cg02036163,-0.00000433,0.00000226,-1.913006779,0.056668285,loss,ns,0.00000703,0.00000385,1.827473003,0.068589876,pos,ns,0.002625942,0.001126837,2.330366166,0.020428228,pos,ns,1.689769302,-0.0000947,0.0000388,-2.444302344,0.015070161,neg,ns,0.95456173,Ago3,Ago3_Exon,4,126350244,126350293,126350292,126350293,50,+,TAGGTTATTCCAGGTTGATAGTCTTTCTCCAAACTGATGCAGGCTTCTCG,Promoter (<=1kb),4,126331704,126350320,18617,2,Ago3-204,27,Ago3-204;Ago3-201;Ago3-203,Ago3;Ago3;Ago3,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,8,214150,ENSMUSG00000028842,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18621,cg17611384,0.000189712,0.0000137,13.84659547,2.83E-34,gain,yes,-0.0000425,0.0000233,-1.827330082,0.068611408,neg,ns,0.013124599,0.006819112,1.924678644,0.055184549,pos,ns,1.258182505,0.000143265,0.000234509,0.61091358,0.541704458,pos,ns,0.242651941,Hoxb3,Hoxb3_Intron,11,96340755,96340804,96340803,96340804,50,+,GTTACGGAGAGTAGGGCGTACCAGTCTTATAGGGCAACCACACTGTGGCG,"Intron (Hoxb3-202/Hoxb3, intron 1 of 3)",11,96323326,96347930,24605,1,Hoxb3-202,17429,Hoxb3-202;Hoxb3-203;Hoxb3-204;Hoxb3-201,Hoxb3;Hoxb3;Hoxb3;Hoxb3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,19,15410,ENSMUSG00000048763,conserved gene and region,11,96340759,96341024,266,*,266,25,0.695488722,0.779053421,0.093984962,1.19E-18,CpGisland,TRUE,U3,Pr-B
10373,cg13020851,0.000021,0.0000162,1.294558552,0.196435998,gain,ns,0.0000502,0.0000275,1.827315546,0.068613599,pos,ns,-0.003493891,0.008054723,-0.433769253,0.66475772,neg,ns,0.17733661,0.000464534,0.000277001,1.677011741,0.094548189,pos,ns,0.665773397,Npas3,Npas3_Intron,12,53255117,53255166,53255165,53255166,50,+,TAGCCTGTGCATGAGTGCGTTCTTTATCACCTGTCTCCATTTGGCATTCG,"Intron (Npas3-204/Npas3, intron 1 of 10)",12,53248157,54069532,821376,1,Npas3-204,6960,Npas3-204;Npas3-201;Npas3-202;Npas3-203,Npas3;Npas3;Npas3;Npas3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,83,103,27386,ENSMUSG00000021010,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
17272,cg23238433,-0.0000267,0.00000456,-5.839974602,1.32E-08,loss,yes,0.0000142,0.00000775,1.82728483,0.068618227,pos,ns,-0.002055222,0.002271941,-0.904610732,0.366374119,neg,ns,0.436075212,0.000123236,0.0000781,1.577288305,0.115749077,pos,ns,0.953931884,Zbtb7b,Zbtb7b_Exon,3,89379818,89379867,89379866,89379867,50,-,TGGTCCTCCTTGGCGAAAGCCTTGTGGCACAGGTGGCACTCATAGGGCCG,"Exon (Zbtb7b-203/Zbtb7b, exon 3 of 3)",3,89377644,89387189,9546,2,Zbtb7b-203,7322,Dcst2-201;Zbtb7b-203;Zbtb7b-204;Zbtb7b-202;Zbtb7b-201;Zbtb7b-206;Zbtb7b-208;Zbtb7b-209;Zbtb7b-205,Dcst2;Zbtb7b;Zbtb7b;Zbtb7b;Zbtb7b;Zbtb7b;Zbtb7b;Zbtb7b;Zbtb7b,17843;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,12,22724,ENSMUSG00000028042,conserved gene and region,3,89379693,89380002,310,*,310,18,0.635483871,0.606785559,0.058064516,6.12E-10,CpGisland,TRUE,NA,NRS
16121,cg16158316,0.00000266,0.00000617,0.431179354,0.666637642,gain,ns,-0.0000192,0.0000105,-1.82702447,0.068657471,neg,ns,-0.015615075,0.003071978,-5.083068889,0.000000643,neg,ns,6.191477047,0.000359435,0.000105645,3.402286683,0.000755939,pos,ns,0.850421208,Bnc2,Bnc2_Intron,4,84457652,84457701,84457700,84457701,50,+,TTTTACCACATCCTAACAAAAACATGACCAGAACTGGTGAAAAACATACG,"Intron (Bnc2-201/Bnc2, intron 4 of 7)",4,84275095,84675034,399940,2,Bnc2-201,217333,Bnc2-201;Bnc2-202;Bnc2-214;Bnc2-215;Bnc2-206;Bnc2-211;Bnc2-205;Bnc2-217;Bnc2-207;Bnc2-212;Bnc2-203;Bnc2-209;Bnc2-221;Bnc2-204;Bnc2-220;Bnc2-208,Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,91,242509,ENSMUSG00000028487,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10450,cg27725202,-0.0000363,0.0000169,-2.151634262,0.032198346,loss,ns,0.0000524,0.0000287,1.826849876,0.068683798,pos,ns,0.006591484,0.008407591,0.783991993,0.433643424,pos,ns,0.362867235,-0.000122675,0.000289136,-0.424279506,0.671656265,neg,ns,0.219934181,Asf1a,Asf1a_fiveUTR,10,53596814,53596863,53596814,53596815,50,-,CGCCTTTGTCCTAATCCACACCAGCAGGTGGAGCCGCAGTTAAAGTTTCC,Promoter (<=1kb),10,53596757,53607912,11156,1,Asf1a-204,57,Asf1a-204;Asf1a-201;Asf1a-203;Asf1a-206;Asf1a-205;Mcm9-208;Mcm9-203;Mcm9-201;Mcm9-206;Mcm9-207,Asf1a;Asf1a;Asf1a;Asf1a;Asf1a;Mcm9;Mcm9;Mcm9;Mcm9;Mcm9,0;0;0;-589;0;0;-3653;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,5,66403,ENSMUSG00000019857,mapped to different genes,10,53596540,53596959,420,*,420,52,0.738095238,0.922920893,0.123809524,4.68E-45,CpGisland,TRUE,U1,Pr-A
97,cg10967140,-0.0000023,0.00000191,-1.200861946,0.230721507,loss,ns,0.00000594,0.00000325,1.826842182,0.068684958,pos,ns,0.002483205,0.000952121,2.608076284,0.009546141,pos,ns,2.020172163,-0.0000814,0.0000327,-2.485295126,0.013471438,neg,ns,0.951091855,Crebbp,Crebbp_Exon,16,4137377,4137426,4137377,4137378,50,-,CGCTTGTCACTGGCATTTTTCAAAGGGAGGCAAACAGGACAGTCATGTCG,"Exon (Crebbp-201/Crebbp, exon 5 of 31)",16,4081328,4213997,132670,2,Crebbp-201,76571,Crebbp-201;Crebbp-205,Crebbp;Crebbp,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,7,12914,ENSMUSG00000022521,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3483,cg20928174,-0.0000056,0.00000378,-1.481633703,0.13945352,loss,ns,0.0000117,0.00000643,1.826799347,0.068691418,pos,ns,0.008140438,0.001882737,4.323726277,0.0000207,pos,ns,4.683963421,-0.000203956,0.0000647,-3.150038004,0.001791724,neg,ns,0.92271818,Bcl11a,Bcl11a_Exon,11,24163796,24163845,24163844,24163845,50,+,GAGTTCTGCGGCAAGACGTTCAAATTTCAGAGCAACCTGGTGGTGCACCG,"Exon (Bcl11a-201/Bcl11a, exon 4 of 5)",11,24078056,24173194,95139,1,Bcl11a-201,85740,Bcl11a-201;Bcl11a-203;Bcl11a-202;Bcl11a-204;Bcl11a-206,Bcl11a;Bcl11a;Bcl11a;Bcl11a;Bcl11a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,51,98,14025,ENSMUSG00000000861,conserved gene but different region,11,24163725,24163848,124,*,124,9,0.612903226,0.894230769,0.072580645,0.00000547,CpGisland,TRUE,U10,Tr-S
22605,cg05079374,-0.00000131,0.00000497,-0.264600466,0.791493098,loss,ns,0.0000154,0.00000844,1.826704171,0.068705774,pos,ns,0.0076862,0.002472355,3.108858365,0.002052373,pos,ns,2.687743809,-0.000287659,0.000085,-3.3832712,0.000808247,neg,ns,0.892911183,Sox6,Sox6_Intergenic_downstream,7,115406100,115406149,115406148,115406149,50,+,AATGACTTTTATCTGTGAAAACATAACTAATAGCTTGGTTTACATTTGCG,Distal Intergenic,7,115512744,115597896,85153,2,Sox6-215,191747,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,57,20679,ENSMUSG00000051910,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12956,cg03897040,-0.00000229,0.00000352,-0.649716313,0.516356618,loss,ns,0.0000109,0.00000598,1.82609826,0.068797227,pos,ns,0.004461647,0.001751392,2.547486066,0.01133289,pos,ns,1.945659314,-0.000093,0.0000602,-1.543524084,0.123723845,neg,ns,0.930860451,Gm50259,Gm50259_Intergenic_upstream,18,68737474,68737523,68737474,68737475,50,+,CGAGGTAAGCAAATATCACCATAGCTCAGTGGTTCTTGCATGAGTAAATT,Distal Intergenic,18,68568411,68568744,334,2,Gm50259-201,-168730,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,7,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24985,cg17003599,-0.0000159,0.0000055,-2.896244086,0.004045142,loss,ns,0.0000171,0.00000934,1.825921801,0.06882388,pos,ns,0.010387482,0.002736682,3.795647602,0.000177109,pos,ns,3.751758847,-0.000324922,0.0000941,-3.452414462,0.000632793,neg,ns,0.900010638,Atrn,Atrn_Exon,2,130961500,130961549,130961548,130961549,50,+,TTTCTAAATAAACTCAAAAGGACCATTCTTAAGGACAGCCGATTTTTCCG,"Exon (Atrn-201/Atrn, exon 10 of 29)",2,130906495,131030333,123839,1,Atrn-201,55005,Atrn-201;Atrn-203,Atrn;Atrn,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,11990,ENSMUSG00000027312,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12376,cg08489732,0.0000836,0.0000109,7.700374541,1.84E-13,gain,yes,-0.0000337,0.0000184,-1.825557872,0.068878875,neg,ns,-0.001843356,0.005401259,-0.341282679,0.733121991,neg,ns,0.134823753,0.0000529,0.000185749,0.284691787,0.77607037,pos,ns,0.565946616,Lctl,Lctl_Intergenic_upstream,9,64078473,64078522,64078521,64078522,50,+,GGACACAGTGGCGACAGCTGATAAGCCAGCCTGTTTAGTTCTGTCTGCCG,Distal Intergenic,9,64117147,64138118,20972,1,Lctl-201,-38625,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,235435,ENSMUSG00000032401,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U5,En-Sd
2753,cg23509770,-0.00000388,0.00000391,-0.99246736,0.321743621,loss,ns,-0.0000121,0.00000664,-1.825556565,0.068879073,neg,ns,-0.004632222,0.001944301,-2.382461229,0.017799955,neg,ns,1.749581095,0.0000097,0.0000669,0.144998295,0.884806445,pos,ns,0.92573346,Smarca4,Smarca4_Exon,9,21678018,21678067,21678018,21678019,50,-,CGTCAACCCCGACTTGGAGGAGCCACCTCTAAAGGTGAGAGGGGTAGTTC,"Exon (Smarca4-203/Smarca4, exon 24 of 27)",9,21616169,21704217,88049,1,Smarca4-201,61849,Smarca4-201;Smarca4-202;Smarca4-204;Smarca4-203,Smarca4;Smarca4;Smarca4;Smarca4,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,6,20586,ENSMUSG00000032187,conserved gene but different region,9,21677969,21678028,60,*,60,7,0.766666667,0.833333333,0.116666667,0.00000466,CpGisland,TRUE,U10,Tr-S
19164,cg00059117,-0.0000278,0.00000752,-3.696567859,0.000258348,loss,ns,-0.0000233,0.0000128,-1.825313593,0.06891581,neg,ns,-0.008810583,0.00374229,-2.354328993,0.019179736,neg,ns,1.717157373,0.0000246,0.000128697,0.19121218,0.848484534,pos,ns,0.861299634,Med24,Med24_threeUTR,11,98717726,98717775,98717726,98717727,50,-,CGGGTGCCACCCTGCCCAAGTCCCTGGGATGTGTGCAATGCTTATGGGGA,3' UTR,11,98704591,98728834,24244,2,Med24-204,11059,Med24-204;Med24-201;Med24-207;Med24-202;Med24-206;Med24-209;Med24-205;Med24-210,Med24;Med24;Med24;Med24;Med24;Med24;Med24;Med24,0;0;0;0;0;1035;11599;11628,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,1,23989,ENSMUSG00000017210,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26082,cg19957773,0.000013,0.00000467,2.779446171,0.005777702,gain,ns,-0.0000145,0.00000793,-1.825285083,0.068920122,neg,ns,-0.001502246,0.002322523,-0.64681665,0.518229234,neg,ns,0.285478092,0.0000143,0.0000799,0.178684734,0.858301976,pos,ns,0.822143557,Pak3,Pak3_Intron,X,143714055,143714104,143714103,143714104,50,+,TTGTTGTCATTCCCAAACTCTGGAGGCCCACGTCACACATTGTTTTGCCG,"Intron (Pak3-201/Pak3, intron 4 of 15)",20,143518591,143797792,279202,1,Pak3-201,195464,Pak3-201;Pak3-207;Pak3-205;Pak3-209;Pak3-208;Pak3-204;Pak3-202;Pak3-203;Pak3-210,Pak3;Pak3;Pak3;Pak3;Pak3;Pak3;Pak3;Pak3;Pak3,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,9,18481,ENSMUSG00000031284,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21071,cg14436031,-0.00000248,0.0000039,-0.635530061,0.52555162,loss,ns,-0.0000121,0.00000663,-1.825234004,0.068927847,neg,ns,-0.000937394,0.001942634,-0.482537844,0.629764473,neg,ns,0.200821843,-0.000160984,0.0000668,-2.409687785,0.016548591,neg,ns,0.823593392,Smarcd2,Smarcd2_Exon,11,106264486,106264535,106264486,106264487,50,+,CGGTGCTAAAACTGAGCATGAAATCTCTCTGGGTCTTCAGCTGGTTGATG,"Exon (Smarcd2-203/Smarcd2, exon 10 of 12)",11,106263179,106267799,4621,2,Smarcd2-203,3264,Psmc5-201;Psmc5-202;Smarcd2-203;Smarcd2-201;Smarcd2-207;Smarcd2-202;Smarcd2-205;Smarcd2-204;Smarcd2-206;Smarcd2-209;Smarcd2-208,Psmc5;Psmc5;Smarcd2;Smarcd2;Smarcd2;Smarcd2;Smarcd2;Smarcd2;Smarcd2;Smarcd2;Smarcd2,8332;8332;0;0;0;0;0;1536;8430;2948;2993,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,83796,ENSMUSG00000078619,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4320,cg13526507,-0.00000283,0.00000187,-1.515074711,0.130772425,loss,ns,0.00000579,0.00000317,1.825147124,0.068940989,pos,ns,0.00104095,0.000929097,1.120389472,0.263415061,pos,ns,0.579359397,-0.0000496,0.000032,-1.553627309,0.121293628,neg,ns,0.942174548,Glis3,Glis3_Intron,19,28395313,28395362,28395313,28395314,50,+,CGGCACAGCTTAGCAATTTTGAGAGCCCATCAAAACAGCAGATATATACC,"Intron (Glis3-209/Glis3, intron 4 of 10)",19,28258851,28680077,421227,2,Glis3-209,284715,Glis3-209;Glis3-201;Glis3-207;Glis3-202,Glis3;Glis3;Glis3;Glis3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,8,226075,ENSMUSG00000052942,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
70,cg08863388,0.00000048,0.00000117,0.410892833,0.681434999,gain,ns,0.00000362,0.00000199,1.824951775,0.068970546,pos,ns,0.0000878,0.000581552,0.15091127,0.880143861,pos,ns,0.055446336,-0.00000281,0.00002,-0.140461955,0.888386232,neg,ns,0.969157469,Plag1,Plag1_threeUTR,4,3904882,3904931,3904882,3904883,50,-,CGGTGAAACATTTTCTCACAATAATTACACTTGTGGGTTTTCTCAGGAGA,3' UTR,4,3900996,3938382,37387,2,Plag1-201,33451,Plag1-201;Plag1-202;Plag1-204,Plag1;Plag1;Plag1,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,22,56711,ENSMUSG00000003282,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22695,cg25333595,-0.00000389,0.00000232,-1.678316541,0.094293063,loss,ns,0.00000718,0.00000394,1.824895186,0.06897911,pos,ns,0.002452973,0.001153087,2.12730922,0.034183564,pos,ns,1.466182657,-0.0000828,0.0000397,-2.088014853,0.037612435,neg,ns,0.954917,BC052040,BC052040_Intron,2,115725561,115725610,115725609,115725610,50,+,AATCTCATTTTAGTACAATTTTCTCGTTTCTGAAGTCGCTCATTGAATCG,"Intron (BC052040-203/BC052040, intron 10 of 10)",2,115581716,115778768,197053,1,BC052040-203,143845,BC052040-203;BC052040-201,BC052040;BC052040,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,37,49,399568,ENSMUSG00000040282,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2213,cg24837799,0.0000508,0.0000124,4.081751372,0.0000569,gain,ns,-0.0000386,0.0000211,-1.824619485,0.069020847,neg,ns,0.01312461,0.006193052,2.119247597,0.034864277,pos,ns,1.457619334,-0.000462872,0.000212979,-2.17332856,0.030512388,neg,ns,0.237348271,Gm37317,Gm37317_Intergenic_upstream,3,18625923,18625972,18625923,18625924,50,+,CGCTTATTATAAGTCTTTATCTCCGTGCAGGAAGGAGAGGAACCATTAGG,Distal Intergenic,3,18609808,18610831,1024,2,Gm37317-201,-15092,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,10,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
19282,cg18945966,0.0000113,0.00000296,3.830556734,0.000154753,gain,ns,-0.00000918,0.00000503,-1.824600839,0.069023671,neg,ns,0.001684741,0.001473826,1.143106916,0.253876217,pos,ns,0.595377981,0.0000126,0.0000507,0.2481079,0.804215191,pos,ns,0.932545773,Foxp1,Foxp1_threeUTR,6,98939707,98939756,98939707,98939708,50,+,CGTTAATCTTACCTGTAAAGCTGCATTGAGAGGTGTGCAGTAGGCGTGGC,3' UTR,6,98925338,99266515,341178,2,Foxp1-206,326759,Foxp1-206;Foxp1-204;Foxp1-220;Foxp1-230;Foxp1-225;Foxp1-201;Foxp1-205;Foxp1-207;Foxp1-208;Foxp1-226;Foxp1-228;Foxp1-221;Foxp1-222;Foxp1-217,Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,9,87,108655,ENSMUSG00000030067,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19671,cg26216441,-0.0000351,0.0000158,-2.214133462,0.027546966,loss,ns,-0.0000491,0.0000269,-1.824553626,0.06903082,neg,ns,0.044913571,0.00788271,5.697732563,2.82E-08,pos,ns,7.549174478,-0.002708203,0.000271086,-9.990209412,1.48E-20,neg,yes,0.694513284,Lin54,Lin54_Exon,5,100485236,100485285,100485284,100485285,50,-,AGGTTTCACCTCTGGCCTCCCTCCAATGGTAACTACTTTAATTTGCTGCG,"Exon (Lin54-201/Lin54, exon 2 of 13)",5,100441918,100500592,58675,2,Lin54-208,15307,Lin54-208;Lin54-204;Lin54-210;Lin54-201;Lin54-202;Lin54-206;Lin54-205;Lin54-209;Lin54-203;Lin54-207,Lin54;Lin54;Lin54;Lin54;Lin54;Lin54;Lin54;Lin54;Lin54;Lin54,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,5,231506,ENSMUSG00000035310,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27336,cg13417771,-0.00000881,0.00000317,-2.776549175,0.00582816,loss,ns,-0.00000983,0.00000539,-1.824512539,0.069037043,neg,ns,-0.003036697,0.001578898,-1.923301407,0.055357913,neg,ns,1.256820289,0.00000703,0.0000543,0.129528247,0.897023677,pos,ns,0.9105503,Ncoa5,Ncoa5_fiveUTR,2,165023200,165023249,165023248,165023249,50,-,GCCTTATTAATATCTGAAAAGAATAATCAACCCATCTGTTCAATGCTACG,Promoter (<=1kb),2,165022672,165023213,542,2,Ncoa5-205,0,Ncoa5-201;Ncoa5-202;Ncoa5-203;Ncoa5-206;Ncoa5-208;Ncoa5-205;Ncoa5-207,Ncoa5;Ncoa5;Ncoa5;Ncoa5;Ncoa5;Ncoa5;Ncoa5,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,7,228869,ENSMUSG00000039804,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26129,cg07351279,-0.0000676,0.0000166,-4.073084909,0.000059,loss,ns,0.0000515,0.0000282,1.824423729,0.069050494,pos,ns,-0.026529294,0.008263722,-3.210332365,0.001464842,neg,ns,2.834209245,0.000850483,0.000284189,2.992668129,0.002987751,pos,ns,0.81851417,Sox5,Sox5_Intron,6,144166213,144166262,144166261,144166262,50,+,TTTCCCCCTTCTCAAGGGAGGCATTGTTCTTGCCTTTCCATAACCAGGCG,"Intron (Sox5-201/Sox5, intron 1 of 14)",6,143828425,144209480,381056,2,Sox5-201,43218,Sox5-201;Sox5-214;Sox5-205;Sox5-202;Sox5-209;Sox5-207;Sox5-210;Sox5-212;Sox5-208;Sox5-213,Sox5;Sox5;Sox5;Sox5;Sox5;Sox5;Sox5;Sox5;Sox5;Sox5,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,71,20678,ENSMUSG00000041540,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21050,cg08630735,0.000140594,0.0000181,7.788754908,1.03E-13,gain,yes,-0.0000559,0.0000307,-1.824386759,0.069056095,neg,ns,0.030701764,0.008984132,3.417332294,0.000716809,pos,ns,3.144596474,-0.001247547,0.000308964,-4.037845164,0.000068,neg,ns,0.226629296,Phlpp1,Phlpp1_Exon,1,106173315,106173364,106173315,106173316,50,+,CGCTTGGAGGCGGAGGAGAAGCCATTGCAGATCCAAAATGACTACCTCTT,"Exon (Phlpp1-201/Phlpp1, exon 1 of 17)",1,106171752,106394250,222499,1,Phlpp1-201,1563,Phlpp1-201,Phlpp1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,98432,ENSMUSG00000044340,conserved gene and region,1,106171404,106173330,1927,*,1927,250,0.725480021,0.988456551,0.12973534,3.12E-220,CpGisland,TRUE,NA,NRS
6372,cg13285426,-0.00000641,0.00000343,-1.868817884,0.062591064,loss,ns,-0.0000106,0.00000583,-1.824249468,0.069076895,neg,ns,-0.006722524,0.001707364,-3.937369774,0.000101779,neg,ns,3.992341549,0.000139988,0.0000587,2.384157442,0.017719628,pos,ns,0.918233291,Cpeb3,Cpeb3_Exon,19,37054265,37054314,37054265,37054266,50,-,CGAAGGGGTCGTGGAACTCCCCCAACAAAGATAGTTTTTCTGGGGTCCAA,"Exon (Cpeb3-201/Cpeb3, exon 9 of 11)",19,37021291,37207462,186172,2,Cpeb3-201,153148,Cpeb3-201;Cpeb3-203;Cpeb3-212;Cpeb3-210;Cpeb3-204;Cpeb3-208;Cpeb3-202;Cpeb3-205,Cpeb3;Cpeb3;Cpeb3;Cpeb3;Cpeb3;Cpeb3;Cpeb3;Cpeb3,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,9,208922,ENSMUSG00000039652,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10550,cg15736995,-0.0000102,0.00000603,-1.694727525,0.091131351,loss,ns,0.0000187,0.0000102,1.824229245,0.069079959,pos,ns,0.00855509,0.003001881,2.849909265,0.004666087,pos,ns,2.331047208,-0.000297789,0.000103234,-2.884590402,0.004193787,neg,ns,0.909469389,Stim2,Stim2_Intergenic_downstream,5,54279189,54279238,54279237,54279238,50,+,ATTTACATCAAAATTTTAATCAACATTACATGTATTATTTATAATACCCG,Distal Intergenic,5,54115857,54118587,2731,1,Stim2-205,163332,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,116873,ENSMUSG00000039156,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23886,cg01130580,-0.00000465,0.00000182,-2.550713607,0.01123067,loss,ns,0.00000565,0.0000031,1.824132954,0.069094551,pos,ns,0.002837686,0.00090809,3.124894443,0.001946973,pos,ns,2.710640073,-0.0000736,0.0000312,-2.358290279,0.018979935,neg,ns,0.064648053,Ipo5,Ipo5_Exon,14,120911267,120911316,120911267,120911268,50,+,CGGCGGAGCAGCAACAGTTCTACCTGCTCCTGGGAAACCTGCTCAGCCCC,Promoter (<=1kb),14,120911224,120947999,36776,1,Ipo5-201,43,Ipo5-201;Ipo5-202;Ipo5-203,Ipo5;Ipo5;Ipo5,0;0;-4531,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,70572,ENSMUSG00000030662,conserved gene but different region,14,120910705,120911271,567,*,567,85,0.793650794,0.983069862,0.149911817,1.10E-81,CpGisland,TRUE,U1,Pr-A
8649,cg24199060,-0.0000655,0.0000136,-4.81752419,0.00000228,loss,ns,-0.0000421,0.0000231,-1.823903908,0.069129272,neg,ns,0.022968051,0.006767312,3.393969745,0.000778416,pos,ns,3.108788093,-0.000721196,0.000232727,-3.098887657,0.002120533,neg,ns,0.558279751,Btrc,Btrc_Intron,19,45476489,45476538,45476489,45476490,50,+,CGTTTTGCGGAGTGCAGTATGGTGCAGTCTTTTAGTGCAGGAATTTTAAG,"Intron (Btrc-204/Btrc, intron 1 of 2)",19,45363734,45507736,144003,1,Btrc-204,112755,Btrc-204;Btrc-201;Btrc-210;Btrc-202;Btrc-203;Btrc-209,Btrc;Btrc;Btrc;Btrc;Btrc;Btrc,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,63,98,12234,ENSMUSG00000025217,conserved gene and region,19,45476406,45476490,85,*,85,8,0.623529412,1.011904762,0.094117647,0.00000348,CpGisland,TRUE,NA,NRS
16357,cg23547813,0.00000329,0.00000257,1.282152566,0.200747126,gain,ns,-0.00000795,0.00000436,-1.823853643,0.069136893,neg,ns,-0.002395722,0.001277018,-1.876028755,0.061590835,neg,ns,1.210483905,0.0000993,0.0000439,2.260126418,0.024507025,pos,ns,0.967604296,Nfix,Nfix_Exon,8,84771872,84771921,84771872,84771873,50,-,CGAGCACTGAGGCGACTTGTAGAGCCGCTCCCCATCAGTACTTTCCAGGG,"Exon (Nfix-204/Nfix, exon 2 of 11)",8,84704712,84773396,68685,2,Nfix-204,1475,Nfix-204;Nfix-201;Nfix-202;Nfix-203;Nfix-205,Nfix;Nfix;Nfix;Nfix;Nfix,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,20,49,18032,ENSMUSG00000001911,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
19904,cg06618394,-0.0000118,0.00000913,-1.289293033,0.198257388,loss,ns,0.0000283,0.0000155,1.823758045,0.06915139,pos,ns,0.013576099,0.004543239,2.98819837,0.003030537,pos,ns,2.518480429,-0.000441154,0.000156242,-2.823535277,0.005057106,neg,ns,0.429624311,Ogt,Ogt_Exon,X,101642987,101643036,101642987,101642988,50,+,CGTATGCTTTCCTTCCAAGGGTTAGCTGAGTTGGCACATCGAGAATATCA,"Exon (Ogt-202/Ogt, exon 3 of 23)",20,101640060,101682940,42881,1,Ogt-202,2927,Ogt-202;Ogt-206;Ogt-201;Ogt-205;Ogt-204;Ogt-207,Ogt;Ogt;Ogt;Ogt;Ogt;Ogt,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,32,33,108155,ENSMUSG00000034160,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
795,cg14459284,-0.0000167,0.00000753,-2.224230245,0.02685296,loss,ns,-0.0000233,0.0000128,-1.823642534,0.06916891,neg,ns,0.009178936,0.003745293,2.450792416,0.014806359,pos,ns,1.829551733,-0.000827806,0.0001288,-6.427046319,4.90E-10,neg,yes,0.806442545,Pum2,Pum2_threeUTR,12,8748443,8748492,8748443,8748444,50,+,CGACCTGAAGACAAGAGCAAAATTGTTTCCGAAATCAGGGGAAAGGTTTT,3' UTR,12,8674134,8751454,77321,1,Pum2-203,74309,Pum2-203;Pum2-216;Pum2-201;Pum2-202;Pum2-207;Pum2-204;Pum2-210;Pum2-209;Pum2-206;Pum2-215,Pum2;Pum2;Pum2;Pum2;Pum2;Pum2;Pum2;Pum2;Pum2;Pum2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,7,11,80913,ENSMUSG00000020594,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24982,cg04060562,-0.000000951,0.00000149,-0.638331823,0.523728975,loss,ns,0.00000461,0.00000253,1.823513105,0.069188546,pos,ns,0.002056305,0.00074119,2.77432823,0.005867114,pos,ns,2.231575499,-0.0000574,0.0000255,-2.250160741,0.025139715,neg,ns,0.96001958,Fgfr2,Fgfr2_threeUTR,7,130909610,130909659,130909658,130909659,50,+,CGAACCCTTGTATACAGAGGTATACATCAAGAGCTGGTGAATGCAGCACG,3' UTR,7,130162451,133123350,2960900,2,Fgfr2-217,2213691,Fgfr2-217;Plekha1-203;Plekha1-202;Plekha1-211;Plekha1-201;Plekha1-210;Plekha1-206;Plekha1-208;Plekha1-204;Plekha1-205,Fgfr2;Plekha1;Plekha1;Plekha1;Plekha1;Plekha1;Plekha1;Plekha1;Plekha1;Plekha1,0;0;0;0;0;12619;0;7365;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,9,79,14183,ENSMUSG00000030849,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1782,cg08126247,-0.00000937,0.00000278,-3.365986818,0.000858702,loss,ns,0.00000862,0.00000473,1.822811728,0.069295031,pos,ns,0.003702417,0.001385028,2.673170169,0.007911674,pos,ns,2.101731629,-0.000116409,0.0000476,-2.443970757,0.01508375,neg,ns,0.065803455,Foxp2,Foxp2_Intron,6,15186280,15186329,15186280,15186281,50,+,CGTGCTGTGTAGAGCAGATGTTTATTTTGTGCTAAAGGGGAAACTCTTTT,"Intron (Foxp2-207/Foxp2, intron 3 of 18)",6,14901349,15441977,540629,1,Foxp2-207,284931,Foxp2-207;Foxp2-213;Foxp2-208;Foxp2-211;Foxp2-217;Foxp2-203;Foxp2-216;Foxp2-205;Foxp2-204;Foxp2-201;Foxp2-210,Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,38,65,114142,ENSMUSG00000029563,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
18563,cg19828220,0.00000854,0.00000472,1.810947475,0.071116875,gain,ns,0.0000146,0.00000801,1.822784658,0.069299143,pos,ns,0.005376443,0.002346998,2.290774567,0.022647359,pos,ns,1.64498243,-0.000104106,0.0000807,-1.289824572,0.198072963,neg,ns,0.051198973,Hoxb6,Hoxb6_Promoter,11,96292416,96292465,96292416,96292417,50,+,CGCCGGTCATGTGGCCGGGCGATCGTGAACATGAACTTTTTATCATTTCC,Promoter (<=1kb),11,96292476,96301569,9094,1,Hoxb6-202,-11,Hoxb6-202;Hoxb7-201;Hoxb7-202,Hoxb6;Hoxb7;Hoxb7,0;0;3701,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,5,16,15414,ENSMUSG00000000690,mapped to different genes,11,96292405,96292440,36,*,36,7,0.75,1.431818182,0.194444444,0.000000102,CpGisland,TRUE,U13,Hc-P
26904,cg06452118,0.00000509,0.00000274,1.857864068,0.064136279,gain,ns,-0.00000848,0.00000465,-1.822748475,0.06930464,neg,ns,-0.002324423,0.001362731,-1.705709644,0.0890638,neg,ns,1.05029878,0.0000686,0.0000469,1.462985747,0.144484403,pos,ns,0.935750267,Cbfa2t2,Cbfa2t2_Exon,2,154521189,154521238,154521189,154521190,50,-,CGTTTGACAGAAAGGGAATGGGCTGATGAATGGAAACATCTTGACCATGT,"Exon (Cbfa2t2-204/Cbfa2t2, exon 7 of 11)",2,154436481,154539356,102876,1,Cbfa2t2-204,84708,Cbfa2t2-204;Cbfa2t2-202;Cbfa2t2-201;Cbfa2t2-203;Cbfa2t2-206;Cbfa2t2-205;Cbfa2t2-208,Cbfa2t2;Cbfa2t2;Cbfa2t2;Cbfa2t2;Cbfa2t2;Cbfa2t2;Cbfa2t2,0;0;0;0;0;5227;-2746,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,4,12396,ENSMUSG00000038533,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13457,cg12131548,0.00000628,0.00000257,2.445067443,0.015038847,gain,ns,0.00000795,0.00000436,1.822431998,0.069352739,pos,ns,0.002713699,0.001278347,2.122818984,0.034561292,pos,ns,1.46141003,-0.0000881,0.000044,-2.004592488,0.045875989,neg,ns,0.935658961,Mindy2,Mindy2_Exon,9,70616830,70616879,70616830,70616831,50,+,CGTTGAAGTTAGTTCACATAATCCATGGTATGTCAGTTGAGTGGCTGTGT,"Exon (Mindy2-201/Mindy2, exon 6 of 9)",9,70599014,70657174,58161,2,Mindy2-201,40295,Mindy2-201;Mindy2-202,Mindy2;Mindy2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,235461,ENSMUSG00000042444,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23284,cg10672194,0.00000301,0.0000033,0.913982443,0.36143639,gain,ns,0.0000102,0.0000056,1.822270412,0.069377307,pos,ns,0.003843623,0.001641641,2.341329576,0.019848444,pos,ns,1.702273541,-0.0000142,0.0000565,-0.25128189,0.801762661,neg,ns,0.95933034,Eri3,Eri3_Intron,4,117647224,117647273,117647272,117647273,50,-,CCGAGAATCTATTACTGAAATTCGGGTGTGATTTGACAGCAAAGTAGACG,"Intron (Eri3-201/Eri3, intron 7 of 8)",4,117550365,117674297,123933,1,Eri3-201,96859,Eri3-201;Eri3-206;Eri3-203,Eri3;Eri3;Eri3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,82,97,140546,ENSMUSG00000033423,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18577,cg08013146,0.0000884,0.00001,8.84102896,7.28E-17,gain,yes,-0.000031,0.000017,-1.822158629,0.069394307,neg,ns,0.000878194,0.004978632,0.176392565,0.860100723,pos,ns,0.065450687,0.00000857,0.000171215,0.05004412,0.960119458,pos,ns,0.050268131,Hoxb6,Hoxb6_fiveUTR,11,96299094,96299143,96299142,96299143,50,-,AATAGGCGCGGCGCTCGGACTATAAAACACAACAAATCATAAACCCGGCG,5' UTR,11,96292476,96301569,9094,1,Hoxb6-202,6618,Hoxb5-202;Hoxb5-201;Hoxb6-202;Hoxb6-201,Hoxb5;Hoxb5;Hoxb6;Hoxb6,0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,6,16,15414,ENSMUSG00000000690,conserved gene and region,11,96299051,96299649,599,*,599,62,0.65442404,0.973218029,0.103505843,3.02E-48,CpGisland,TRUE,U3,Pr-B
6076,cg08000020,0.0000313,0.00000529,5.908603781,9.08E-09,gain,yes,-0.0000164,0.00000899,-1.822089122,0.06940488,neg,ns,-0.002274296,0.002633527,-0.863593118,0.388479112,neg,ns,0.410632328,0.00016212,0.0000906,1.790056839,0.074420614,pos,ns,0.086840263,Psd2,Psd2_Intergenic_upstream,18,35938668,35938717,35938716,35938717,50,+,GACCCCGTTGCCAGGAGCAGTCAGGATGCGGCAGCGTCTCCATGGCAACG,Distal Intergenic,18,35964830,36014712,49883,1,Psd2-201,-26113,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,24,29,74002,ENSMUSG00000024347,mapped to different genes,18,35938492,35938793,302,*,302,33,0.751655629,0.779080675,0.109271523,9.13E-27,CpGisland,TRUE,U3,Pr-B
13248,cg05533537,0.00000687,0.00000586,1.172238525,0.242001369,gain,ns,-0.0000181,0.00000995,-1.821687085,0.069466059,neg,ns,-0.006913754,0.002915863,-2.371083255,0.018347112,neg,ns,1.73643229,0.00025585,0.000100276,2.551450391,0.01120745,pos,ns,0.744886491,Gm44690,Gm44690_Intergenic_downstream,7,69845104,69845153,69845104,69845105,50,-,CGTATATCATGAGGGTGTCAGGTGTGAAAGCAAACGAATGGCCTGTGTTT,Distal Intergenic,7,69883979,69884360,382,2,Gm44690-201,39256,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,24,,NA,mapped to different genes,7,69845104,69845308,205,*,205,11,0.468292683,0.982570806,0.053658537,0.00000584,CpGisland,TRUE,U15,NS
15576,cg19448990,-0.00000371,0.00000182,-2.036113178,0.042588781,loss,ns,-0.00000564,0.00000309,-1.821569124,0.069484018,neg,ns,-0.000299318,0.000906572,-0.330164276,0.741498847,neg,ns,0.12988952,0.00000864,0.0000312,0.277090299,0.781895446,pos,ns,0.048609614,Tob2,Tob2_fiveUTR,15,81858265,81858314,81858313,81858314,50,+,GCCCGAAGTGAGCAAAGTCAATGAAAAGTTTCACCCTTAGCAACCCTGCG,Promoter (<=1kb),15,81848272,81858485,10214,2,Tob2-201,171,Tob2-201;Tob2-204;Tob2-202;Tob2-203,Tob2;Tob2;Tob2;Tob2,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,2,57259,ENSMUSG00000048546,conserved gene but different region,15,81858313,81858640,328,*,328,21,0.567073171,0.831081081,0.06402439,2.59E-12,CpGisland,TRUE,U1,Pr-A
27705,cg09567197,-0.00000322,0.00000188,-1.715479031,0.087256631,loss,ns,0.00000581,0.00000319,1.821450397,0.069502097,pos,ns,0.000131859,0.000934487,0.141103513,0.887879815,pos,ns,0.051645817,0.0000261,0.0000321,0.811199053,0.417873743,pos,ns,0.971224777,Zbtb18,Zbtb18_threeUTR,1,177448536,177448585,177448536,177448537,50,-,CGGGGACCTGTACAGACACATTCGCAAGTTCCACTGTGAGTTGGTGAACT,3' UTR,1,177444295,177450764,6470,1,Zbtb18-202,4241,Zbtb18-209;Zbtb18-211;Zbtb18-208;Zbtb18-203;Zbtb18-202;Zbtb18-204;Zbtb18-206;Zbtb18-210;Zbtb18-205;Zbtb18-212;Zbtb18-207;Zbtb18-201,Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,22,30928,ENSMUSG00000063659,conserved gene but different region,1,177448381,177448608,228,*,228,17,0.596491228,0.838961039,0.074561404,3.94E-11,CpGisland,TRUE,U10,Tr-S
20455,cg11764619,0.0000215,0.00000499,4.298942423,0.000023,gain,ns,0.0000154,0.00000848,1.821343203,0.069518424,pos,ns,0.007279068,0.002483975,2.930411663,0.0036366,pos,ns,2.439304464,-0.000107274,0.0000854,-1.255785175,0.210139522,neg,ns,0.127864082,Hoxc4,Hoxc4_Intergenic_downstream,15,103060584,103060633,103060584,103060585,50,-,CGTGGTTTCCGGTGTGTATTAACTTATAGTTAAATTCTGGAGGAAAAGGC,Distal Intergenic,15,103034395,103036852,2458,1,Hoxc4-201,26238,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,32,91,15423,ENSMUSG00000075394,mapped to different genes,15,103060516,103060594,79,*,79,8,0.506329114,1.58,0.101265823,0.00000199,CpGisland,TRUE,NA,NRS
16361,cg14537141,-0.0000324,0.00000682,-4.753917122,0.00000306,loss,ns,-0.0000211,0.0000116,-1.821325483,0.069521123,neg,ns,0.016595561,0.003395629,4.887330394,0.00000164,pos,ns,5.784520287,-0.000356292,0.000116775,-3.051085444,0.002477224,neg,ns,0.722762454,Nfix,Nfix_Exon,8,84772104,84772153,84772104,84772105,50,-,CGCAGCTTGGCCAGCAGCCGGGATGCCCACTTCTGCTTGATCTCGGGCTT,"Exon (Nfix-204/Nfix, exon 2 of 11)",8,84704712,84773396,68685,2,Nfix-204,1243,Nfix-204;Nfix-201;Nfix-202;Nfix-203;Nfix-205,Nfix;Nfix;Nfix;Nfix;Nfix,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,20,49,18032,ENSMUSG00000001911,conserved gene but different region,8,84771960,84772433,474,*,474,36,0.61814346,0.805285512,0.075949367,3.03E-23,CpGisland,TRUE,U13,Hc-P
12587,cg02190444,-0.000000304,0.00000408,-0.074418545,0.940725351,loss,ns,0.0000126,0.00000694,1.82130463,0.069524299,pos,ns,0.005332776,0.002031899,2.624528564,0.009106708,pos,ns,2.040638583,-0.000138784,0.0000699,-1.986122588,0.04790015,neg,ns,0.928648824,Ube2k,Ube2k_fiveUTR,5,65581379,65581428,65581427,65581428,50,+,ATTCTAGGTCCGGTTTATCACTAAAATATGGCATCCTAATATTAGTTCCG,5' UTR,5,65537233,65598988,61756,1,Ube2k-201,44146,Ube2k-201;Ube2k-203;Ube2k-204;Ube2k-206;Ube2k-210;Ube2k-207;Ube2k-209;Ube2k-202;Ube2k-205,Ube2k;Ube2k;Ube2k;Ube2k;Ube2k;Ube2k;Ube2k;Ube2k;Ube2k,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,TRUE,TRUE,TRUE,FALSE,FALSE,fiveUTR,6,7,53323,ENSMUSG00000029203,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8051,cg12263847,0.0000897,0.00000601,14.93765384,2.21E-38,gain,yes,-0.0000186,0.0000102,-1.821210249,0.069538678,neg,ns,0.010571025,0.002989561,3.535978799,0.000468286,pos,ns,3.329488539,-0.0000648,0.000102811,-0.630740971,0.528674623,neg,ns,0.119626814,Pax5,Pax5_fiveUTR,4,44703366,44703415,44703414,44703415,50,-,CTTACTATGCATGGATGCAAACGGGTCGTGCTTACAGTGTATTTCCATCG,Promoter (<=1kb),4,44679454,44703413,23960,2,Pax5-216,0,Pax5-201;Pax5-202;Pax5-203;Pax5-204;Pax5-205;Pax5-207;Pax5-206;Pax5-209;Pax5-210;Pax5-212;Pax5-213;Pax5-214;Pax5-215;Pax5-208;Pax5-216;Pax5-217;Pax5-218;Pax5-219,Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,45,18507,ENSMUSG00000014030,conserved gene but different region,4,44703085,44703505,421,*,421,37,0.617577197,0.926154944,0.087885986,3.03E-26,CpGisland,TRUE,U3,Pr-B
3306,cg26020530,-0.00000192,0.000000806,-2.388646871,0.017508563,loss,ns,0.00000249,0.00000137,1.821204506,0.069539553,pos,ns,0.000461276,0.000401043,1.150191446,0.250951528,pos,ns,0.600410155,-0.00000911,0.0000138,-0.660294224,0.509555354,neg,ns,0.983646368,Kcnma1,Kcnma1_threeUTR,14,23526564,23526613,23526564,23526565,50,+,CGCCGAATTTATTCCGACTCAGGATGAGAGCAGCAATTTCGGGCACGTAG,3' UTR,14,23289431,23803304,513874,2,Kcnma1-207,276691,Kcnma1-207;Kcnma1-210;Kcnma1-205;Kcnma1-201;Kcnma1-208;Kcnma1-209;Kcnma1-212;Kcnma1-204;Kcnma1-202;Kcnma1-211;Kcnma1-229;Kcnma1-234;Kcnma1-223;Kcnma1-214;Kcnma1-216;Kcnma1-219;Kcnma1-220;Kcnma1-224;Kcnma1-233;Kcnma1-236;Kcnma1-237;Kcnma1-213;Kcnma1-228;Kcnma1-203;Kcnma1-206;Kcnma1-221;Kcnma1-225;Kcnma1-226;Kcnma1-230;Kcnma1-235;Kcnma1-217;Kcnma1-238;Kcnma1-231;Kcnma1-218;Kcnma1-222;Kcnma1-232,Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,13,41,16531,ENSMUSG00000063142,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15427,cg03805542,-0.0000391,0.00000973,-4.02122681,0.0000728,loss,ns,-0.0000301,0.0000165,-1.821109466,0.069554035,neg,ns,-0.007407049,0.004841931,-1.52977178,0.127092978,neg,ns,0.895878443,-0.000308471,0.000166514,-1.852526394,0.064900639,neg,ns,0.86288345,Tnrc6b,Tnrc6b_Exon,15,80880237,80880286,80880237,80880238,50,+,CGAACTGATTTGGACCCCAGGGTGCTCTCAAACACTGGCTGGGGCCAAAC,"Exon (Tnrc6b-201/Tnrc6b, exon 8 of 25)",15,80711313,80941085,229773,1,Tnrc6b-201,168924,Tnrc6b-201;Tnrc6b-204;Tnrc6b-207;Tnrc6b-208;Tnrc6b-206;Tnrc6b-209,Tnrc6b;Tnrc6b;Tnrc6b;Tnrc6b;Tnrc6b;Tnrc6b,0;0;0;0;-2387;-4064,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,20,24,213988,ENSMUSG00000047888,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14543,cg11332125,0.0000407,0.00000608,6.691257122,1.04E-10,gain,yes,0.0000188,0.0000103,1.821063298,0.06956107,pos,ns,0.01268661,0.003027221,4.190844183,0.0000363,pos,ns,4.440233286,-0.000336332,0.000104106,-3.230668096,0.001367689,neg,ns,0.066563848,Gm50360,Gm50360_Intergenic_downstream,18,76379026,76379075,76379026,76379027,50,+,CGCCGTTCTCTGTTAGGAGGGTAATTTAGAGCAATTACACCGATTATTAT,Distal Intergenic,18,76321824,76322259,436,1,Gm50360-201,57202,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,10,,NA,mapped to different genes,18,76378834,76379067,234,*,234,37,0.747863248,1.1544,0.158119658,8.13E-37,CpGisland,TRUE,NA,NRS
7989,cg18184692,0.0000497,0.00000875,5.677681291,3.14E-08,gain,yes,0.0000271,0.0000149,1.820866629,0.069591048,pos,ns,0.007577185,0.004354977,1.739891059,0.082870588,pos,ns,1.081599579,-0.0000792,0.000149767,-0.528888098,0.597261551,neg,ns,0.062899975,Pax2,Pax2_Intergenic_upstream,19,44674849,44674898,44674849,44674850,50,+,CGCGGTAACCTTTGCAGATGGCGCCGCTATTGCTGAGAAATGGATTGCTT,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-81147,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,19,44674652,44674916,265,*,265,31,0.59245283,1.339693412,0.116981132,3.55E-26,CpGisland,TRUE,U13,Hc-P
16376,cg10436871,-0.0000575,0.00000983,-5.850434787,1.25E-08,loss,yes,-0.0000304,0.0000167,-1.82044475,0.06965539,neg,ns,0.002830076,0.004890557,0.578681762,0.563224116,pos,ns,0.249318758,0.00014012,0.000168186,0.833128249,0.405413823,pos,ns,0.823873893,Nfix,Nfix_Intron,8,84780106,84780155,84780106,84780107,50,-,CGAACTTGAGTTAATTAATGCTAAGGAAGAAAAGAGGCGCCCTCGCTCTG,"Intron (Nfix-201/Nfix, intron 1 of 8)",8,84708614,84800140,91527,2,Nfix-201,19985,Nfix-201;Nfix-202;Nfix-205,Nfix;Nfix;Nfix,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,49,18032,ENSMUSG00000001911,conserved gene and region,8,84779926,84780165,240,*,240,13,0.554166667,0.771895101,0.054166667,0.000000544,CpGisland,TRUE,U13,Hc-P
6802,cg23401456,0.000012,0.00000503,2.389081566,0.017488245,gain,ns,-0.0000155,0.00000854,-1.820351533,0.069669613,neg,ns,0.000771572,0.002502188,0.308359093,0.758016208,pos,ns,0.120321508,-0.0000671,0.0000861,-0.77932476,0.436382963,neg,ns,0.908799639,Luc7l2,Luc7l2_Exon,6,38568917,38568966,38568917,38568918,50,-,CGTGAGTTATCGCTAACTTTTCAGATGTGTTAATGAATGTGGAACAAAAG,"Exon (Luc7l2-209/Luc7l2, exon 4 of 12)",6,38551334,38605040,53707,1,Luc7l2-213,17583,Luc7l2-213;Luc7l2-208;Luc7l2-201;Luc7l2-209;Luc7l2-207;Luc7l2-205;Luc7l2-202;Luc7l2-204;Luc7l2-210;Luc7l2-203,Luc7l2;Luc7l2;Luc7l2;Luc7l2;Luc7l2;Luc7l2;Luc7l2;Luc7l2;Luc7l2;Luc7l2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,10,192196,ENSMUSG00000029823,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
159,cg12776790,0.0000127,0.0000101,1.252001905,0.21151297,gain,ns,-0.0000313,0.0000172,-1.820016527,0.069720749,neg,ns,-0.006684194,0.005030721,-1.32867501,0.184932411,neg,ns,0.732986968,-0.0000542,0.000173006,-0.313373541,0.754207625,neg,ns,0.759070841,Gria4,Gria4_Exon,9,4427101,4427150,4427101,4427102,50,-,CGCCTGCCTCACTGAGTTTCAAAACGGCAAGGTTTACAGGAGTTCTTCAC,"Exon (Gria4-202/Gria4, exon 15 of 17)",9,4417896,4796142,378247,2,Gria4-202,368992,Gria4-202;Gria4-204;Gria4-201,Gria4;Gria4;Gria4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,16,18,14802,ENSMUSG00000025892,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15799,cg14238615,-0.00000544,0.0000017,-3.209215663,0.001470358,loss,ns,0.00000524,0.00000288,1.819856119,0.069745245,pos,ns,0.00133635,0.000844031,1.583295423,0.114373767,pos,ns,0.941673575,-0.0000361,0.000029,-1.243122838,0.214761938,neg,ns,0.062320764,Dpf3,Dpf3_Promoter,12,83487462,83487511,83487510,83487511,50,+,CAAATGTAACAATTTTCTTCTTGTTAATTGCATCTCCTGACATTTCTGCG,Promoter (<=1kb),12,83213751,83487716,273966,2,Dpf3-207,205,Dpf3-207;Dpf3-206,Dpf3;Dpf3,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,2,16,70127,ENSMUSG00000021221,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
20148,cg10129665,-0.0000188,0.0000171,-1.099637523,0.272343302,loss,ns,0.0000529,0.0000291,1.819630656,0.069779688,pos,ns,0.005383584,0.008514525,0.63228236,0.527668436,pos,ns,0.277638884,0.000347467,0.000292814,1.186648258,0.23627499,pos,ns,0.916134252,Calcoco1,Calcoco1_Intergenic_upstream,15,102737427,102737476,102737475,102737476,50,+,CGGGACGGCTCCCTGGGGGATGATTAACACTTCATCGTCCATCTGATGCG,Distal Intergenic,15,102706777,102722178,15402,2,Calcoco1-201,-15249,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,20,29,67488,ENSMUSG00000023055,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
919,cg11641421,-0.0000037,0.00001,-0.36907999,0.71232006,loss,ns,0.000031,0.000017,1.819519331,0.069796699,pos,ns,0.007173068,0.004988286,1.437982563,0.151447704,pos,ns,0.819737306,-0.000186373,0.000171547,-1.086427242,0.278134065,neg,ns,0.897559916,Gm48774,Gm48774_Intergenic_downstream,12,9847887,9847936,9847935,9847936,50,-,GCCAAAATAAATATTGCCAAATTAGTAAGGCATACTGAACAAATTAAGCG,Distal Intergenic,12,9690691,9691670,980,1,Gm48774-201,157245,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7041,cg25830596,0.0000167,0.0000138,1.203660987,0.229638961,gain,ns,0.0000428,0.0000235,1.819185138,0.069847788,pos,ns,0.013582795,0.006885329,1.972715565,0.049416262,pos,ns,1.306130108,-0.0000578,0.000236786,-0.244073465,0.807335378,neg,ns,0.168004875,Tfap2a,Tfap2a_threeUTR,13,40715667,40715716,40715667,40715668,50,-,CGACATAAAGCGTATCAAATATTTATTTATCTGGGCAACAAAGGACTATG,3' UTR,13,40715302,40730443,15142,2,Tfap2a-201,14727,Tfap2a-201;Tfap2a-202;Tfap2a-205;Tfap2a-203;Tfap2a-209;Tfap2a-208;Tfap2a-206,Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,57,21418,ENSMUSG00000021359,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
10765,cg04580925,-0.0000212,0.00000653,-3.247766464,0.001290661,loss,ns,0.0000202,0.0000111,1.818268362,0.069988095,pos,ns,-0.00000426,0.003248114,-0.001310795,0.99895498,neg,ns,0.000454084,-0.000147849,0.000111702,-1.323595505,0.186612683,neg,ns,0.699614711,Dclk1,Dclk1_Exon,3,55256017,55256066,55256017,55256018,50,-,CGAGAGAATAAGGATTTCATTCGGCCCAAGCTGGTCACCATCATCAGAAG,"Exon (Dclk1-204/Dclk1, exon 3 of 17)",3,55242364,55539068,296705,1,Dclk1-204,13653,Dclk1-204;Dclk1-203;Dclk1-201;Dclk1-206,Dclk1;Dclk1;Dclk1;Dclk1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,13175,ENSMUSG00000027797,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21583,cg00282792,-0.00000975,0.00000561,-1.738367253,0.08313901,loss,ns,-0.0000173,0.00000953,-1.818236247,0.069993015,neg,ns,-0.00313434,0.002792355,-1.122471679,0.262530554,neg,ns,0.580820145,0.00000749,0.000096,0.078021387,0.937861376,pos,ns,0.91856784,Zfhx3,Zfhx3_Intron,8,108455277,108455326,108455277,108455278,50,-,CGGTCGAGGCATCTGGACATGAATTCAATATGGATTGCTTTAATTAAATG,"Intron (Zfhx3-204/Zfhx3, intron 3 of 15)",8,107942644,108961630,1018987,1,Zfhx3-204,512633,Zfhx3-204,Zfhx3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,114,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4039,cg07687957,-0.0000371,0.0000069,-5.373474634,0.000000152,loss,yes,0.0000213,0.0000117,1.818222277,0.069995155,pos,ns,-0.007345,0.003435363,-2.138056417,0.033293859,neg,ns,1.477635867,0.0000995,0.000118142,0.842499082,0.400158176,pos,ns,0.9140854,Gm45647,Gm45647_Intergenic_upstream,8,26626581,26626630,26626581,26626582,50,+,CGGAGCACATTTATATGCAAAGGCATATAATATGTCCCCTGTATCTAATT,Distal Intergenic,8,26780315,26780509,195,1,Gm45647-201,-153685,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,46,62,,NA,mapped to different genes,8,26626405,26626582,178,*,178,11,0.516853933,0.941346154,0.061797753,0.00000152,CpGisland,TRUE,U15,NS
6587,cg15124968,-0.00000289,0.00000211,-1.36752395,0.172451765,loss,ns,-0.00000652,0.00000359,-1.81790657,0.07004353,neg,ns,-0.000685614,0.001050409,-0.652711588,0.514425962,neg,ns,0.288677122,-0.0000238,0.0000361,-0.659635035,0.509977811,neg,ns,0.051461488,Gm37013,Gm37013_Exon,18,37806285,37806334,37806333,37806334,50,-,TAGCTCATTCTTCGTGCAGTTATTGGCTGGGACTCTGTGTGCCGCTGTCG,"Exon (BC037039-201/BC037039-201, exon 1 of 1)",18,36969916,37833296,863381,1,Gm37013-201,836369,Gm37013-201;Gm37388-201;Gm42416-201;Pcdhga1-201;Pcdhga10-201;Pcdhga11-201;Pcdhga12-201;Pcdhga2-201;Pcdhga3-201;Pcdhga4-201;Pcdhga5-201;Pcdhga6-201;Pcdhga7-201;Pcdhga8-201;Pcdhga9-201;Pcdhgb1-201;Pcdhgb2-202;Pcdhgb4-202;Pcdhgb5-201;Pcdhgb6-201;Pcdhgb7-201;Pcdhgb8-201;Pcdhgc3-203;Pcdhgc3-201;Pcdhgc3-202,Gm37013;Gm37388;Gm42416;Pcdhga1;Pcdhga10;Pcdhga11;Pcdhga12;Pcdhga2;Pcdhga3;Pcdhga4;Pcdhga5;Pcdhga6;Pcdhga7;Pcdhga8;Pcdhga9;Pcdhgb1;Pcdhgb2;Pcdhgb4;Pcdhgb5;Pcdhgb6;Pcdhgb7;Pcdhgb8;Pcdhgc3;Pcdhgc3;Pcdhgc3,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,14,100384868,ENSMUSG00000103458,mapped to different genes,18,37806251,37806629,379,*,379,32,0.63060686,0.850014017,0.084432718,3.32E-22,CpGisland,TRUE,U3,Pr-B
21221,cg11873500,-0.00000312,0.00000483,-0.64587562,0.518837713,loss,ns,0.0000149,0.00000821,1.817887725,0.070046418,pos,ns,0.003039905,0.002405098,1.263942094,0.207200393,pos,ns,0.683609426,-0.000125599,0.0000827,-1.51852166,0.129902105,neg,ns,0.871908301,Ppfia2,Ppfia2_Intron,10,106835207,106835256,106835255,106835256,50,-,GATTATCAATATGTTATGGAAGCTAAACTACAAGAAATGATCTCCATACG,"Intron (Ppfia2-201/Ppfia2, intron 10 of 31)",10,106470339,106932492,462154,1,Ppfia2-201,364868,Ppfia2-201;Ppfia2-203,Ppfia2;Ppfia2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,9,327814,ENSMUSG00000053825,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10944,cg06078629,-0.00000214,0.00000196,-1.090697823,0.276252902,loss,ns,0.00000605,0.00000333,1.81779067,0.070061295,pos,ns,0.003094976,0.000975232,3.173578721,0.001656814,pos,ns,2.780726205,-0.0000905,0.0000335,-2.699437212,0.007326809,neg,ns,0.960854302,Tcf7l2,Tcf7l2_fiveUTR,19,55894605,55894654,55894653,55894654,50,+,TTCTGAAGCATTGGAAGGCAGGGCTGCGGAAATAATACGATCACAGTCCG,5' UTR,19,55741820,55933229,191410,1,Tcf7l2-213,152785,Tcf7l2-213;Tcf7l2-201;Tcf7l2-208;Tcf7l2-211;Tcf7l2-212;Tcf7l2-206;Tcf7l2-204;Tcf7l2-205;Tcf7l2-222;Tcf7l2-215;Tcf7l2-214;Tcf7l2-207;Tcf7l2-202;Tcf7l2-209;Tcf7l2-210;Tcf7l2-217;Tcf7l2-220;Tcf7l2-218;Tcf7l2-203;Tcf7l2-216;Tcf7l2-219;Tcf7l2-221,Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,88,21416,ENSMUSG00000024985,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24409,cg13515202,0.000231433,0.0000148,15.61480341,5.90E-41,gain,yes,-0.0000458,0.0000252,-1.817655419,0.070082033,neg,ns,0.01868274,0.007376767,2.532646048,0.011813655,pos,ns,1.927615714,-0.000145901,0.000253686,-0.575123191,0.565625164,neg,ns,0.29046676,Grik3,Grik3_Intergenic_upstream,4,125431102,125431151,125431150,125431151,50,+,AAGTGCTTCCCCTCCGCCCCTAAGGGTGCCATGTGTTTATCTTGCTTTCG,Distal Intergenic,4,125490700,125714173,223474,1,Grik3-201,-59549,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,18,14807,ENSMUSG00000001985,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15862,cg11672688,0.00000294,0.00000072,4.0750044,0.0000585,gain,ns,-0.00000222,0.00000122,-1.81750455,0.07010517,neg,ns,0.000197925,0.000358574,0.551976855,0.58136191,pos,ns,0.235553426,0.00000248,0.0000123,0.201256739,0.840629816,pos,ns,0.012448587,Gm6411,Gm6411_Intron,13,83729785,83729834,83729785,83729786,50,-,CGTGACCTCGCAGCTAAACCTTGAACGTGAAGCCGGGATGGGGGAAAACA,"Intron (C130071C03Rik-201/C130071C03Rik-201, intron 1 of 3)",13,83761132,83762335,1204,2,Gm6411-201,32550,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,36,623241,NA,mapped to different genes,13,83729748,83729900,153,*,153,14,0.620915033,0.998136067,0.091503268,1.88E-10,CpGisland,TRUE,U3,Pr-B
4132,cg01301067,-0.00000105,0.00000499,-0.21101636,0.83301315,loss,ns,0.0000154,0.00000848,1.817106802,0.070166199,pos,ns,0.005665315,0.002483676,2.281019961,0.023225414,pos,ns,1.634036545,-0.000194848,0.0000854,-2.281237699,0.023212371,neg,ns,0.915260651,Appl1,Appl1_Exon,14,26949582,26949631,26949582,26949583,50,-,CGTGAAGTAAAACTGTCTGTCCCAGGTAGATGACACCAAGCCTGTTTTAC,"Exon (Appl1-201/Appl1, exon 11 of 22)",14,26918988,26971232,52245,2,Appl1-201,21601,Appl1-201;Appl1-202;Appl1-204,Appl1;Appl1;Appl1,0;8880;20869,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,72993,ENSMUSG00000040760,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24471,cg07887749,0.00000654,0.00000389,1.680422226,0.09388251,gain,ns,-0.000012,0.00000661,-1.816977676,0.070186022,neg,ns,-0.006530585,0.001936602,-3.372187876,0.000840272,neg,ns,3.075580249,0.0000747,0.0000666,1.122265574,0.262618014,pos,ns,0.842350218,Ago1,Ago1_Exon,4,126460534,126460583,126460534,126460535,50,+,CGGGCACAGGCCCCCACCCTGTGAGGCATCCTGGGCACGGAGGAGCCCTG,"Exon (Ago1-202/Ago1, exon 3 of 17)",4,126435012,126468421,33410,2,Ago1-207,7838,Ago1-207;Ago1-201;Ago1-206;Ago1-202;Ago1-205;Ago1-203,Ago1;Ago1;Ago1;Ago1;Ago1;Ago1,0;0;0;0;0;-409,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,13,236511,ENSMUSG00000041530,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6298,cg09276123,-0.000000991,0.0000016,-0.618591458,0.536639785,loss,ns,0.00000495,0.00000272,1.816955813,0.070189378,pos,ns,0.002283489,0.0007976,2.86295184,0.004483065,pos,ns,2.348424917,-0.0000511,0.0000274,-1.862041653,0.063543269,neg,ns,0.963032849,Tshz3,Tshz3_Intron,7,36742359,36742408,36742359,36742360,50,+,CGGGGAATCGCGCTCCAGTTAAAGATGCATAAAATATCAGCACTTTTTTA,"Intron (Tshz3-201/Tshz3, intron 1 of 1)",7,36698118,36773553,75436,1,Tshz3-201,44241,Tshz3-201,Tshz3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,58,243931,ENSMUSG00000021217,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23264,cg25563495,0.0000352,0.00000655,5.384469162,0.000000144,gain,yes,-0.0000202,0.0000111,-1.816854088,0.070204998,neg,ns,0.00293561,0.003258074,0.901026056,0.368273925,pos,ns,0.43382903,0.0000181,0.000112045,0.161550316,0.871765222,pos,ns,0.906788919,Eri3,Eri3_Exon,4,117637333,117637382,117637381,117637382,50,-,CTGGCGGCCTGCGTGAGCTTGATAAATGGGGAGCACTCCAGACTGACTCG,Promoter (<=1kb),4,117637338,117674281,36944,1,Eri3-203,0,Eri3-201;Eri3-206;Eri3-203,Eri3;Eri3;Eri3,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,97,140546,ENSMUSG00000033423,conserved gene but different region,4,117637294,117637471,178,*,178,15,0.634831461,0.841740227,0.084269663,1.21E-10,CpGisland,TRUE,U11,Tr-P
17699,cg26755522,0.0000024,0.00000249,0.961955036,0.33682192,gain,ns,-0.0000077,0.00000424,-1.816397008,0.070275217,neg,ns,-0.003996183,0.00124173,-3.21823809,0.001426337,neg,ns,2.845777754,0.000102579,0.0000427,2.402158828,0.01688662,pos,ns,0.051832752,Zic4,Zic4_threeUTR,9,91387922,91387971,91387922,91387923,50,-,CGTCCTAACAACGCTGATGAAACGTAAAAGGTTCTTTGTCAGCGATTTGT,3' UTR,9,91378642,91389348,10707,1,Zic4-201,9280,Zic4-204;Zic4-209;Zic4-205;Zic4-201;Zic4-202,Zic4;Zic4;Zic4;Zic4;Zic4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,threeUTR,18,55,22774,ENSMUSG00000036972,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
3971,cg25843465,-0.000000762,0.00000336,-0.22633488,0.821090134,loss,ns,-0.0000104,0.00000572,-1.81630104,0.070289968,neg,ns,-0.001787646,0.001674669,-1.067462374,0.286593672,neg,ns,0.542733403,0.0000301,0.0000576,0.522334889,0.601810235,pos,ns,0.958654111,Hook3,Hook3_Intron,8,26083775,26083824,26083775,26083776,50,-,CGTTAGTTAAGAAGCGGTGTTGCCACGTCAAGGCCCTTCCCCGCGAACAC,"Intron (1700047A11Rik-202/1700047A11Rik-202, intron 1 of 4)",8,26021421,26119224,97804,2,Hook3-201,35400,Hook3-201;Hook3-208;Hook3-204,Hook3;Hook3;Hook3,0;-4398;8458,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,4,320191,ENSMUSG00000037234,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15273,cg09335098,0.0000905,0.0000174,5.208365332,0.000000348,gain,yes,-0.0000536,0.0000295,-1.816278584,0.07029342,neg,ns,0.026276492,0.008649844,3.037799688,0.002585729,pos,ns,2.587417075,-0.000786952,0.000297467,-2.645505601,0.008572777,neg,ns,0.205616261,Zfp36l1,Zfp36l1_Exon,12,80110131,80110180,80110179,80110180,50,+,GGCACAGCTCCGTCTTGTACTTGGGGTGGCGGGTCAGGCTGCGGAGCTCG,"Exon (Zfp36l1-201/Zfp36l1, exon 2 of 2)",12,80107754,80113013,5260,2,Zfp36l1-201,2833,Zfp36l1-201;Zfp36l1-202;Zfp36l1-204;Zfp36l1-203,Zfp36l1;Zfp36l1;Zfp36l1;Zfp36l1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,8,12192,ENSMUSG00000021127,conserved gene but different region,12,80110016,80110382,367,*,367,38,0.667574932,0.944467019,0.103542234,8.67E-30,CpGisland,TRUE,U1,Pr-A
25237,cg04858261,0.00000847,0.000005,1.693639262,0.091338328,gain,ns,-0.0000154,0.0000085,-1.816167992,0.070310422,neg,ns,-0.000621234,0.002490371,-0.249454479,0.803174456,neg,ns,0.095190112,-0.0000134,0.0000856,-0.15658753,0.875671859,neg,ns,0.86205702,Cstf2,Cstf2_Exon,X,134072443,134072492,134072443,134072444,50,+,CGCCGGGCCTGCATCAATTGAGCGAGTTCAAGGTACCCATTGTATCTGTG,"Exon (Cstf2-207/Cstf2, exon 7 of 12)",20,134059187,134086046,26860,1,Cstf2-203,13256,Cstf2-203;Cstf2-201;Cstf2-202;Cstf2-207;Cstf2-208;Cstf2-204,Cstf2;Cstf2;Cstf2;Cstf2;Cstf2;Cstf2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,108062,ENSMUSG00000031256,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12573,cg18368628,-0.0000192,0.0000051,-3.763216233,0.000200583,loss,ns,-0.0000157,0.00000867,-1.816077036,0.070324408,neg,ns,-0.007241458,0.002540089,-2.850867939,0.004652406,neg,ns,2.332322402,0.0000811,0.0000874,0.928525384,0.353857512,pos,ns,0.817850618,Tjp1,Tjp1_Exon,7,65314795,65314844,65314795,65314796,50,-,CGTGTAATGGCAGACTCCGGTGGAGTCCCAACCTCATCATTAAGAGTTTC,"Exon (Tjp1-202/Tjp1, exon 19 of 28)",7,65296165,65371239,75075,2,Tjp1-202,56395,Tjp1-202;Tjp1-201;Tjp1-207,Tjp1;Tjp1;Tjp1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,13,21872,ENSMUSG00000030516,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19170,cg07958326,-0.0000335,0.00000508,-6.59129842,1.87E-10,loss,yes,-0.0000157,0.00000864,-1.815872576,0.070355855,neg,ns,-0.003535308,0.0025304,-1.397134461,0.163372366,neg,ns,0.786821401,0.000065,0.000087,0.746506858,0.455927044,pos,ns,0.906414216,Thra,Thra_Exon,11,98756915,98756964,98756963,98756964,50,-,CCTCCCAGGGTATATCCCTAGTTACCTGGACAAAGACGAGCAGTGTGTCG,"Exon (Thra-207/Thra, exon 4 of 4)",11,98741811,98757695,15885,1,Thra-207,15104,Thra-205;Thra-209;Thra-204;Thra-207;Thra-201;Thra-202;Thra-208;Thra-206;Thra-203,Thra;Thra;Thra;Thra;Thra;Thra;Thra;Thra;Thra,16277;0;16011;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,13,18,21833,ENSMUSG00000058756,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18201,cg18289982,-0.000000472,0.00000142,-0.332540939,0.739705588,loss,ns,-0.00000438,0.00000241,-1.815715992,0.070379946,neg,ns,0.0000765,0.000706864,0.10824481,0.913871527,pos,ns,0.039114853,-0.00000423,0.0000243,-0.173814036,0.862125059,neg,ns,0.9608064,Ap3b1,Ap3b1_Intron,13,94471317,94471366,94471365,94471366,50,-,GTTTTGAGTGCCATGTTTTTAGTTGTATTTCCACATTCATTATTCTCACG,"Intron (Ap3b1-201/Ap3b1, intron 15 of 26)",13,94358960,94566317,207358,1,Ap3b1-201,112357,Ap3b1-201;Ap3b1-205,Ap3b1;Ap3b1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,55,11774,ENSMUSG00000021686,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19498,cg10641044,0.0000449,0.00000821,5.468356682,9.36E-08,gain,yes,-0.0000253,0.000014,-1.815641009,0.070391485,neg,ns,-0.006197803,0.004088449,-1.515930078,0.130556031,neg,ns,0.884203063,0.000264145,0.000140601,1.878677213,0.061226819,pos,ns,0.861549789,Foxn3,Foxn3_Intron,12,99458082,99458131,99458082,99458083,50,-,CGCTGTGTTAATTCCTTCACCCATGAACCCCAGGGGAATGCTAACATTCA,"Intron (Foxn3-205/Foxn3, intron 1 of 2)",12,99388345,99563508,175164,2,Foxn3-205,105377,Foxn3-205;Foxn3-214;Foxn3-213;Foxn3-210,Foxn3;Foxn3;Foxn3;Foxn3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,17,71375,ENSMUSG00000033713,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
18695,cg05666541,0.0000113,0.00000745,1.520282134,0.12945935,gain,ns,0.000023,0.0000127,1.81557891,0.070401043,pos,ns,0.006792856,0.003706371,1.832751254,0.067798551,pos,ns,1.168779589,-0.0000166,0.000127462,-0.129964329,0.896678938,neg,ns,0.383829446,Skap1,Skap1_Intron,11,96743170,96743219,96743170,96743171,50,-,CGCAGCACAGATGGGCCGAGCAGATTAAACATTTCCGTCACATTGTTTCC,"Intron (Skap1-204/Skap1, intron 11 of 12)",11,96464593,96758941,294349,1,Skap1-204,278577,Skap1-204;Skap1-203;Skap1-201,Skap1;Skap1;Skap1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,40,46,78473,ENSMUSG00000057058,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
26462,cg24272006,-0.0000153,0.00000693,-2.200676516,0.028496066,loss,ns,0.0000214,0.0000118,1.814963763,0.070495776,pos,ns,0.007950865,0.003450535,2.304240845,0.021870015,pos,ns,1.660150915,-0.000285203,0.000118664,-2.40345369,0.016828055,neg,ns,0.860092949,Ubl3,Ubl3_threeUTR,5,148504734,148504783,148504782,148504783,50,+,AACTCTGCTCTATACAAATTTAATTCTGATCAGTATGAACAATATTTTCG,3' UTR,5,148504635,148552662,48028,2,Ubl3-201,47879,Ubl3-201;Ubl3-204;Ubl3-202;Ubl3-206;Ubl3-203;Ubl3-207,Ubl3;Ubl3;Ubl3;Ubl3;Ubl3;Ubl3,0;48006;48006;32807;46881;46873,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,24109,ENSMUSG00000001687,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25705,cg01744051,-0.00000275,0.00000124,-2.221798761,0.027018687,loss,ns,0.00000381,0.0000021,1.814905661,0.070504729,pos,ns,0.00125592,0.000615627,2.040065378,0.042191095,pos,ns,1.374779204,-0.0000273,0.0000212,-1.287817654,0.198769955,neg,ns,0.96836751,Nek7,Nek7_Intron,1,138497116,138497165,138497116,138497117,50,-,CGGCATCTCCTAATCAGCTACCATGTGAAATGCAAATTCAGACAGTCTGA,"Intron (Nek7-202/Nek7, intron 9 of 9)",1,138482875,138619749,136875,2,Nek7-202,122584,Nek7-202;Nek7-203;Nek7-201,Nek7;Nek7;Nek7,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,9,59125,ENSMUSG00000026393,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24151,cg03835304,-0.000000482,0.00000274,-0.175923309,0.860469056,loss,ns,0.00000845,0.00000466,1.814781335,0.070523891,pos,ns,0.003378984,0.001364072,2.477130552,0.01377729,pos,ns,1.860836194,-0.0000953,0.0000469,-2.031164377,0.043091238,neg,ns,0.938383533,Rbbp6,Rbbp6_Exon,7,122997678,122997727,122997678,122997679,50,-,CGTAGGCGCTCATTTTCCAGGTTAGTGTTTTGCAAGCCTTCACAACAGAA,"Exon (Rbbp6-201/Rbbp6, exon 16 of 18)",7,122970564,123002557,31994,1,Rbbp6-201,27114,Rbbp6-201;Rbbp6-210;Rbbp6-202;Rbbp6-208,Rbbp6;Rbbp6;Rbbp6;Rbbp6,0;0;0;-2552,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,5,19647,ENSMUSG00000030779,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6778,cg04356548,-0.00000788,0.00000176,-4.469136399,0.000011,loss,ns,0.00000544,0.000003,1.814580275,0.070554887,pos,ns,0.00169793,0.000877611,1.934717359,0.05393458,pos,ns,1.268132702,-0.0000266,0.0000302,-0.88161086,0.378670321,neg,ns,0.067770808,Ubn2,Ubn2_fiveUTR,6,38433904,38433953,38433904,38433905,50,-,CGCATGCGCCCGCTCAGCGGCCTGCTTCTATTTATGTGGGGGATCCAACA,Promoter (<=1kb),6,38433950,38512763,78814,1,Ubn2-205,0,Ubn2-205;Ubn2-201,Ubn2;Ubn2,0;-220,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,1,320538,ENSMUSG00000038538,conserved gene but different region,6,38433875,38434811,937,*,937,131,0.74493063,1.008594835,0.139807898,8.71E-121,CpGisland,TRUE,U1,Pr-A
2366,cg22159998,0.0000226,0.0000136,1.664169815,0.09708893,gain,ns,-0.0000418,0.0000231,-1.814517237,0.070564608,neg,ns,-0.01985469,0.006755455,-2.939060228,0.003539351,neg,ns,2.451076306,0.000641043,0.00023232,2.759317525,0.006136629,pos,ns,0.19671416,Tfap2b,Tfap2b_fiveUTR,1,19209012,19209061,19209060,19209061,50,-,TGAGGCTTACTTGTCCAGCCTATTGTTTGAGACAACAGATATAAGTTGCG,Promoter (<=1kb),1,19208914,19238576,29663,1,Tfap2b-201,98,Tfap2b-201;Tfap2b-204;Tfap2b-202;Tfap2b-205;Tfap2b-203,Tfap2b;Tfap2b;Tfap2b;Tfap2b;Tfap2b,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,40,21419,ENSMUSG00000025927,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
6278,cg24636888,-0.00000272,0.00000232,-1.174042093,0.241279312,loss,ns,0.00000714,0.00000394,1.814264853,0.070603537,pos,ns,0.003226994,0.001153322,2.797998416,0.005463844,pos,ns,2.26250174,-0.00013164,0.0000397,-3.318982845,0.001011142,neg,ns,0.950242204,Tenm2,Tenm2_Intron,11,36714604,36714653,36714604,36714605,50,+,CGATTAATCTTCTAACACTAATTAGATATTTGCTAATTAGCGTCTGATGT,"Intron (Tenm2-202/Tenm2, intron 4 of 30)",11,36006656,37235882,1229227,2,Tenm2-202,521229,Tenm2-202;Tenm2-208;Tenm2-201;Tenm2-204,Tenm2;Tenm2;Tenm2;Tenm2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,47,84,23964,ENSMUSG00000049336,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8689,cg22459894,0.00000139,0.00000436,0.319323725,0.749696117,gain,ns,0.0000134,0.00000741,1.814093047,0.070630047,pos,ns,0.002885817,0.002170815,1.329370356,0.184703272,pos,ns,0.73352541,-0.000153749,0.0000747,-2.059481022,0.040282965,neg,ns,0.898233382,Poll,Poll_Intergenic_downstream,19,45549335,45549384,45549383,45549384,50,-,CACTAAATGCAAACGGCGGTCCCTGCTGTTCCCATCAAATTAATTAACCG,Distal Intergenic,19,45552275,45560531,8257,2,Poll-201,11196,Poll-201,Poll,11147,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,16,56626,ENSMUSG00000025218,mapped to different genes,19,45549348,45549466,119,*,119,11,0.62184874,0.973958333,0.092436975,0.000000025,CpGisland,TRUE,NA,NRS
6070,cg24406369,0.00014116,0.0000167,8.447180211,1.17E-15,gain,yes,0.0000515,0.0000284,1.813993176,0.070645462,pos,ns,0.022842627,0.008317179,2.746439256,0.006376733,pos,ns,2.195401762,-0.00044615,0.000286027,-1.559817632,0.119823253,neg,ns,0.181863717,Psd2,Psd2_Intergenic_upstream,18,35933700,35933749,35933700,35933701,50,+,CGCGCCACGCCGGGCCCTTTGGGGGAATACTAATTCCACTACAAGATAAA,Distal Intergenic,18,35964830,36014712,49883,1,Psd2-201,-31081,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,24,29,74002,ENSMUSG00000024347,mapped to different genes,18,35933670,35933711,42,*,42,10,0.761904762,1.647058824,0.238095238,3.06E-12,CpGisland,TRUE,U13,Hc-P
17955,cg16015033,-0.0000203,0.00000775,-2.624797428,0.00909968,loss,ns,0.0000239,0.0000132,1.813959552,0.070650652,pos,ns,0.006544324,0.003856963,1.696755842,0.090746597,pos,ns,1.042169653,-0.000411707,0.000132641,-3.103924656,0.002085843,neg,ns,0.859838198,Gm12639,Gm12639_Intergenic_downstream,4,92793459,92793508,92793507,92793508,50,+,CCTCATAAATAGTCCTTTGATGAAATGAGCAGAGGCTCTGTGTCTGCCCG,Distal Intergenic,4,92970244,92970736,493,2,Gm12639-201,177228,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,2,102638982,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8768,cg21515042,-0.00000147,0.00000327,-0.450227934,0.652860787,loss,ns,0.0000101,0.00000556,1.813832127,0.070670324,pos,ns,0.00250775,0.001628741,1.539686514,0.124656875,pos,ns,0.904283765,-0.000119989,0.000056,-2.142188885,0.032957092,neg,ns,0.929086514,Lcorl,Lcorl_Exon,5,45733646,45733695,45733694,45733695,50,+,CTCATTACCATTGCAATAGCTTCTTCCATTATTTCATGATCATATTGCCG,"Exon (Lcorl-204/Lcorl, exon 7 of 7)",5,45697181,45857615,160435,2,Lcorl-202,123920,Lcorl-202;Lcorl-212;Lcorl-210;Lcorl-205;Lcorl-204;Lcorl-201,Lcorl;Lcorl;Lcorl;Lcorl;Lcorl;Lcorl,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,9,209707,ENSMUSG00000015882,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13699,cg12362593,0.0000286,0.0000107,2.67721805,0.007818888,gain,ns,-0.0000329,0.0000181,-1.813671516,0.070695126,neg,ns,0.00773879,0.005315191,1.455975741,0.146411316,pos,ns,0.834425354,-0.000208565,0.000182789,-1.141017498,0.254743321,neg,ns,0.894256365,Tle1,Tle1_Exon,4,72169069,72169118,72169117,72169118,50,-,AAATGAAAGCTGGTTATACACACTGTAGGAGGTAGACCTGGTAGGCCACG,"Exon (Tle1-201/Tle1, exon 6 of 20)",4,72117142,72200919,83778,2,Tle1-203,31801,Tle1-203;Tle1-202;Tle1-204;Tle1-207;Tle1-201;Tle1-205;Tle1-209;Tle1-208,Tle1;Tle1;Tle1;Tle1;Tle1;Tle1;Tle1;Tle1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,20,21885,ENSMUSG00000008305,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23159,cg26211011,0.0000716,0.00000734,9.752804297,8.96E-20,gain,yes,-0.0000226,0.0000125,-1.812731938,0.070840363,neg,ns,-0.000572528,0.003653678,-0.156699011,0.875584069,neg,ns,0.057702149,-0.0000645,0.00012565,-0.513673122,0.607846468,neg,ns,0.635388631,Rnf220,Rnf220_Intron,4,117373541,117373590,117373589,117373590,50,+,CAAAGAAAAATGCCCAATTTGTCATGTCATGTCCAGCTGTTAACCTCCCG,"Intron (Rnf220-201/Rnf220, intron 2 of 14)",4,117271463,117497052,225590,2,Rnf220-201,123462,Rnf220-201;Rnf220-202;Rnf220-207,Rnf220;Rnf220;Rnf220,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11088,cg17466220,0.0000675,0.00000534,12.64438602,7.77E-30,gain,yes,-0.0000164,0.00000907,-1.812555802,0.070867617,neg,ns,0.006538022,0.002657645,2.460081434,0.014435904,pos,ns,1.840556025,-0.000146641,0.0000914,-1.604457464,0.109631503,neg,ns,0.101241991,Nkx2-1,Nkx2-1_fiveUTR,12,56536677,56536726,56536677,56536678,50,+,CGCTTTGTGGCCACGCTGGATATTAGTAGATGAGGATCATTCTGCTTCAA,Promoter (<=1kb),12,56531958,56536908,4951,2,Nkx2-1-201,182,Nkx2-1-202;Nkx2-1-201,Nkx2-1;Nkx2-1,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,6,29,21869,ENSMUSG00000001496,mapped to different genes,12,56536346,56536691,346,*,346,28,0.61849711,0.84618744,0.080924856,5.59E-19,CpGisland,TRUE,U13,Hc-P
20266,cg21815434,-0.0000294,0.00000605,-4.857299629,0.00000189,loss,ns,-0.0000186,0.0000103,-1.812439937,0.070885549,neg,ns,-0.003404968,0.003008879,-1.131640214,0.258660354,neg,ns,0.587270132,0.000173988,0.000103475,1.681448156,0.093683003,pos,ns,0.08067405,Kctd12,Kctd12_Exon,14,102981459,102981508,102981507,102981508,50,+,ACTCCCTGCAGAAGACGTACTCGGTGTAGCTGGTCCAGATCTTGTCCTCG,"Exon (Kctd12-202/Kctd12, exon 1 of 1)",14,102976581,102982637,6057,2,Kctd12-202,1129,Kctd12-202;Kctd12-201,Kctd12;Kctd12,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,5,239217,ENSMUSG00000098557,conserved gene and region,14,102981360,102981666,307,*,307,23,0.635179153,0.77712965,0.074918567,6.30E-15,CpGisland,TRUE,U2,Pr-W
12080,cg01838095,0.00000033,0.0000016,0.206704801,0.836376108,gain,ns,-0.00000492,0.00000272,-1.81235071,0.070899362,neg,ns,-0.000235752,0.00079554,-0.296341752,0.767167535,neg,ns,0.115109784,0.0000235,0.0000274,0.860381279,0.390243815,pos,ns,0.956015154,Ccar1,Ccar1_Exon,10,62764346,62764395,62764346,62764347,50,+,CGTTCACCCTGAAGCTTCTCGACCAGCTGCTGCTTGTATCCTCGGGAGAG,"Exon (Ccar1-201/Ccar1, exon 14 of 25)",10,62743928,62792231,48304,2,Ccar1-201,27836,Ccar1-201;Ccar1-211;Ccar1-207;Ccar1-206;Ccar1-212;Ccar1-205;Ccar1-210;Gm48145-201,Ccar1;Ccar1;Ccar1;Ccar1;Ccar1;Ccar1;Ccar1;Gm48145,0;0;-879;0;-3997;0;0;2595,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,10,67500,ENSMUSG00000020074,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
290,cg22654310,0.000000524,0.00000174,0.301208524,0.763457426,gain,ns,-0.00000535,0.00000295,-1.812152446,0.070930061,neg,ns,-0.001565624,0.000865215,-1.809521645,0.071338454,neg,ns,1.146676305,0.0000372,0.0000298,1.248975815,0.212616222,pos,ns,0.961600203,Glyr1,Glyr1_Exon,16,5021403,5021452,5021403,5021404,50,-,CGGGGGTTCTTCCCAGACGGGCCCCCTCCTGGATGAACAAATCACACTGC,"Exon (Glyr1-202/Glyr1, exon 11 of 16)",16,5013909,5049857,35949,2,Glyr1-202,28405,Glyr1-202;Glyr1-201;Glyr1-205,Glyr1;Glyr1;Glyr1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,74022,ENSMUSG00000022536,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25679,cg21263869,0.0000518,0.000029,1.786618494,0.074976261,gain,ns,-0.0000893,0.0000493,-1.812130784,0.070933416,neg,ns,-0.00098624,0.01443347,-0.068330077,0.945566934,neg,ns,0.024307723,0.000191631,0.000496366,0.386069,0.699710392,pos,ns,0.546893917,Ddost,Ddost_Exon,4,138311674,138311723,138311674,138311675,50,+,CGTGTATGGTGTATTCCAGTTTAAAGTGGATTACAACCGGCTAGGCTACA,"Exon (Ddost-201/Ddost, exon 10 of 11)",4,138304730,138312628,7899,1,Ddost-201,6944,Ddost-201;Pink1-202;Pink1-201;Pink1-203,Ddost;Pink1;Pink1;Pink1,0;4703;14584;14517,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,13200,ENSMUSG00000028757,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14473,cg08708887,-0.00000236,0.00000109,-2.154812643,0.031946432,loss,ns,0.00000337,0.00000186,1.812095416,0.070938894,pos,ns,0.002339761,0.000544799,4.294725111,0.0000234,pos,ns,4.630250138,-0.0000522,0.0000187,-2.783614685,0.005705791,neg,ns,0.971533293,Zc3h3,Zc3h3_Intron,15,75834947,75834996,75834947,75834948,50,+,CGATTATCTGTTGTGCCAAATAAATTGTGTACAGCATATATCCTGTGGCA,"Intron (Zc3h3-201/Zc3h3, intron 3 of 11)",15,75754430,75841915,87486,2,Zc3h3-201,6919,Zc3h3-201,Zc3h3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,18,223642,ENSMUSG00000075600,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19334,cg24412245,-0.0000117,0.00000381,-3.082861933,0.002234469,loss,ns,0.0000117,0.00000646,1.812046905,0.070946408,pos,ns,0.00291908,0.001893896,1.541309091,0.124261706,pos,ns,0.905662687,-0.000111416,0.0000651,-1.710646286,0.088146855,neg,ns,0.92318141,Dock7,Dock7_Exon,4,99020037,99020086,99020037,99020038,50,+,CGGCTGTATAGGCTTCCTTTGAAAATTCTGAACAGCTAGATTTACCAAAG,"Exon (Dock7-201/Dock7, exon 16 of 49)",4,98936671,99120915,184245,2,Dock7-201,100829,Dock7-201;Dock7-205;Dock7-204;Dock7-202;Dock7-214;Dock7-207,Dock7;Dock7;Dock7;Dock7;Dock7;Dock7,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,9,67299,ENSMUSG00000028556,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7314,cg11002854,0.0000213,0.00000412,5.174394001,0.000000412,gain,yes,0.0000127,0.00000699,1.812036616,0.070948001,pos,ns,0.007438406,0.002049259,3.629802812,0.000331678,pos,ns,3.479282715,-0.00010904,0.0000705,-1.547242983,0.122824902,neg,ns,0.099183976,Gm8176,Gm8176_Exon,1,42261927,42261976,42261975,42261976,50,-,TCATTTTGATTTGGCCTCCCGCTGCGAATGGGACTGCTTTGTCTCAGCCG,"Exon (Gm28175-201/Gm28175-201, exon 1 of 1)",1,42179290,42180388,1099,2,Gm8176-201,-81588,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,17,666582,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3503,cg05234920,-0.0000723,0.0000143,-5.039955623,0.000000793,loss,yes,0.0000441,0.0000244,1.811479365,0.071034363,pos,ns,-0.002638424,0.007137178,-0.369673284,0.711878343,neg,ns,0.147594219,0.0000178,0.000245447,0.072354379,0.942366549,pos,ns,0.588824988,Gm11892,Gm11892_Intergenic_upstream,4,24213800,24213849,24213800,24213801,50,+,CGAGCCAATTAGACTTGTCAGACTCCAATCCAGTTGAGAGTGACCCCTGA,Distal Intergenic,4,24238100,24239301,1202,1,Gm11892-201,-24251,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,16,16,664973,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11268,cg21407049,0.0000682,0.00000854,7.980891993,2.85E-14,gain,yes,-0.0000263,0.0000145,-1.811326442,0.071058078,neg,ns,-0.004150848,0.004250215,-0.976620677,0.329518469,neg,ns,0.482120239,0.000102724,0.000146165,0.702795587,0.482710566,pos,ns,0.730475148,Mipol1,Mipol1_Intron,12,57292069,57292118,57292069,57292070,50,-,CGTGCTTGAATTTCTTGTTTGCTTTGTTGAGTCTGCTGACGAATACTAAT,"Intron (Mipol1-210/Mipol1, intron 1 of 3)",12,57230427,57308695,78269,1,Mipol1-210,61642,Mipol1-210;Mipol1-207;Mipol1-206;Mipol1-205;Mipol1-201;Mipol1-209;Mipol1-208;Mipol1-203,Mipol1;Mipol1;Mipol1;Mipol1;Mipol1;Mipol1;Mipol1;Mipol1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,7,73490,ENSMUSG00000047022,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26763,cg24952162,0.000121993,0.00000938,13.00021346,3.87E-31,gain,yes,-0.0000289,0.0000159,-1.811257369,0.071068792,neg,ns,0.017654912,0.004670471,3.780113601,0.000188009,pos,ns,3.725821434,-0.000758262,0.000160617,-4.720927797,0.00000356,neg,ns,0.22251545,Rps15a-ps7,Rps15a-ps7_Intergenic_downstream,2,152177361,152177410,152177409,152177410,50,-,AGGTTGATTTCCTCCTGGAGCTTCCCTCAGCAAACAATGAGACAATGGCG,Distal Intergenic,2,152185291,152185682,392,2,Rps15a-ps7-201,8321,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,100043843,NA,mapped to different genes,2,152177349,152177575,227,*,227,14,0.616740088,0.651897436,0.061674009,3.49E-08,CpGisland,TRUE,NA,NRS
13789,cg21399612,-0.0000416,0.0000122,-3.396848557,0.000770567,loss,ns,-0.0000377,0.0000208,-1.81107963,0.071096367,neg,ns,0.031592151,0.006093608,5.184474093,0.000000392,pos,ns,6.407205608,-0.001132674,0.000209559,-5.405043126,0.000000129,neg,yes,0.718774473,Ube2g1,Ube2g1_fiveUTR,11,72645525,72645574,72645573,72645574,50,+,TTGCTATGACAGATGTTTTCAGTCCCACTTCTCACTACTGATCTCCCTCG,5' UTR,11,72607283,72686481,79199,1,Ube2g1-201,38242,Ube2g1-201;Ube2g1-203;Ube2g1-202,Ube2g1;Ube2g1;Ube2g1,0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,5,67128,ENSMUSG00000020794,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15727,cg15770575,0.0000698,0.0000097,7.189761335,4.88E-12,gain,yes,-0.0000299,0.0000165,-1.811034645,0.071103347,neg,ns,0.010796303,0.004830099,2.235213458,0.0261153,pos,ns,1.583104982,-0.000281496,0.000166107,-1.694666949,0.091142862,neg,ns,0.596811673,Tcf20,Tcf20_Exon,15,82982885,82982934,82982885,82982886,50,+,CGGATTTCTTTGTGGCATCCACTTCATCGCTCAGCAGCCAGCCATGATGT,"Exon (Gm29019-202/Gm29019-202, exon 3 of 3)",15,82857130,82987872,130743,2,Tcf20-203,4938,Tcf20-203,Tcf20,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,13,21411,ENSMUSG00000041852,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21027,cg20690148,-0.0000017,0.00000142,-1.197951019,0.231851188,loss,ns,0.00000436,0.00000241,1.810931934,0.071119287,pos,ns,0.002355508,0.000705979,3.336511027,0.000951569,pos,ns,3.021559647,-0.0000651,0.0000243,-2.679402768,0.007769218,neg,ns,0.971721592,Vrk1,Vrk1_Intergenic_downstream,12,106129266,106129315,106129314,106129315,50,-,ATTACGGCTTGGGCACCAGGGACTTGTTTTTTTTGCAAGATTAATGAGCG,Distal Intergenic,12,106030717,106075409,44693,1,Vrk1-204,98598,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,29,37,22367,ENSMUSG00000021115,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26391,cg23415880,0.000140405,0.00000726,19.33498327,3.38E-55,gain,yes,-0.0000223,0.0000123,-1.810876125,0.07112795,neg,ns,0.003185939,0.003614232,0.881498195,0.378731176,pos,ns,0.421668944,0.000142448,0.000124293,1.146063705,0.252652687,pos,ns,0.299757377,Gsx1,Gsx1_Promoter,5,147188486,147188535,147188486,147188487,50,+,CGGCGTGGGTGGGGTTGACAAGAATAGAGTACATTATGCAGTTCATTTAG,Promoter (<=1kb),5,147188696,147190947,2252,1,Gsx1-201,-161,Gsx1-201,Gsx1,-161,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,6,20,14842,ENSMUSG00000053129,conserved gene and region,5,147188425,147188490,66,*,66,7,0.590909091,1.5,0.106060606,0.00000889,CpGisland,TRUE,U13,Hc-P
27055,cg06374441,-0.000000863,0.00000475,-0.181578938,0.856031846,loss,ns,0.0000146,0.00000807,1.810858025,0.07113076,pos,ns,0.008574101,0.002365413,3.624780369,0.000337921,pos,ns,3.471184224,-0.000220909,0.0000813,-2.715665708,0.006985238,neg,ns,0.554439986,Negr1,Negr1_threeUTR,3,157312947,157312996,157312995,157312996,50,-,GAAAGTGCTGATGGCTGGATCCAATCTGGTACAGTTTGTTAAAAGCAGCG,3' UTR,3,156561794,157316445,754652,1,Negr1-202,751153,Negr1-202,Negr1,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,6,320840,ENSMUSG00000040037,mapped to different genes,3,157312995,157313049,55,*,55,7,0.581818182,1.558704453,0.127272727,0.00000255,CpGisland,TRUE,U15,NS
7973,cg08613933,0.00003,0.00000503,5.967164669,6.59E-09,gain,yes,-0.0000155,0.00000855,-1.810587157,0.071172816,neg,ns,-0.005623979,0.002505749,-2.244430637,0.025509898,neg,ns,1.593291281,0.000201932,0.0000862,2.343345882,0.0197434,pos,ns,0.102034115,Pax2,Pax2_Intergenic_upstream,19,44671288,44671337,44671288,44671289,50,-,CGCGCCACAAGAGGGAAATCAGGGCGAAAAATCAAAGCCCAAGTTTGACA,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-84757,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,19,44671276,44671313,38,*,38,6,0.684210526,1.425,0.157894737,0.00000546,CpGisland,TRUE,U13,Hc-P
2139,cg11047957,-0.00000328,0.000000931,-3.522154891,0.000492396,loss,ns,0.00000286,0.00000158,1.809979965,0.071267168,pos,ns,0.000525983,0.000463219,1.135496546,0.257044457,pos,ns,0.589991756,-0.0000318,0.0000159,-1.995915792,0.046817689,neg,ns,0.031813284,Mllt10,Mllt10_Intron,2,18064128,18064177,18064128,18064129,50,+,CGCGGCCAACTGCAGGAAGCCATGCTTCATTACACCCTTCATGGAAGCTG,"Intron (Mllt10-201/Mllt10, intron 1 of 22)",2,18055237,18212387,157151,1,Mllt10-201,8891,Mllt10-201;Mllt10-208;Mllt10-203;Mllt10-210;Mllt10-204;Mllt10-205;Mllt10-209;Mllt10-211,Mllt10;Mllt10;Mllt10;Mllt10;Mllt10;Mllt10;Mllt10;Mllt10,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,4,17354,ENSMUSG00000026743,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
20573,cg11157816,0.000186261,0.0000129,14.43601372,1.74E-36,gain,yes,-0.0000397,0.0000219,-1.809844891,0.071288171,neg,ns,-0.003591565,0.006421718,-0.55928418,0.576371617,neg,ns,0.239297414,-0.0000279,0.000220842,-0.126466223,0.899444869,neg,ns,0.386178476,Olfml3,Olfml3_Exon,3,103737840,103737889,103737888,103737889,50,+,GCGTTCCATGTACTCCACAAGGTGGTGCTGCTGTCCTTGGAGGGGTCCCG,Promoter (<=1kb),3,103731665,103738001,6337,2,Olfml3-201,112,Gm10964-201;Hipk1-203;Olfml3-203;Olfml3-201;Olfml3-202,Gm10964;Hipk1;Olfml3;Olfml3;Olfml3,-1477;0;-3611;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,99543,ENSMUSG00000027848,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22178,cg26750856,-0.0000215,0.0000197,-1.089100351,0.276955555,loss,ns,0.0000606,0.0000335,1.809334496,0.07136758,pos,ns,0.010115816,0.00980725,1.031463041,0.303127776,pos,ns,0.518374267,0.000128952,0.000337271,0.382341164,0.702470314,pos,ns,0.737317627,Hdx,Hdx_Exon,X,111671392,111671441,111671440,111671441,50,+,AGCTGAAAGCAATTTTTACTTTGATTTGTCATTCCATTTTCATAATAACG,"Exon (Hdx-202/Hdx, exon 2 of 10)",20,111569931,111697079,127149,2,Hdx-202,25638,Hdx-202;Hdx-201,Hdx;Hdx,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,8,245596,ENSMUSG00000034551,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27927,cg01736336,0.00000975,0.0000106,0.91606939,0.360342561,gain,ns,0.0000327,0.0000181,1.809147174,0.071396743,pos,ns,0.002486587,0.005299179,0.469239974,0.639227964,pos,ns,0.194344234,-0.0000751,0.000182238,-0.411952467,0.680658965,neg,ns,0.682749896,Prox1,Prox1_Intergenic_upstream,1,190375309,190375358,190375309,190375310,50,-,CGCAGCTTAGGTCCTGGTCATTGTCCTGTGAAAAGAGCCAAGCATTTAAC,Distal Intergenic,1,190118035,190170714,52680,2,Prox1-202,-204644,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,13,59,19130,ENSMUSG00000010175,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23273,cg17314086,0.00000498,0.00000419,1.189583804,0.235120318,gain,ns,-0.0000129,0.00000712,-1.809003666,0.071419091,neg,ns,-0.000503207,0.002085666,-0.241269394,0.809505833,neg,ns,0.091780017,0.0000313,0.0000717,0.43625918,0.662952359,pos,ns,0.926408682,Eri3,Eri3_Intron,4,117645112,117645161,117645160,117645161,50,+,ATTATACACGATTCCATTTCGCGGGCCCAGCAATGTAATTTCACAGGGCG,"Intron (Eri3-201/Eri3, intron 7 of 8)",4,117550365,117674297,123933,1,Eri3-201,94747,Eri3-201;Eri3-206;Eri3-203,Eri3;Eri3;Eri3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,82,97,140546,ENSMUSG00000033423,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10832,cg19220554,0.00000363,0.00000473,0.767970683,0.443089184,gain,ns,0.0000145,0.00000804,1.808831739,0.071445872,pos,ns,0.003512834,0.00235445,1.491997192,0.136716811,pos,ns,0.864178079,0.0000562,0.000081,0.694562418,0.487849783,pos,ns,0.899331606,Aldoart2,Aldoart2_Intergenic_downstream,12,55567013,55567062,55567061,55567062,50,+,AATTCCTGTAATGCTTAATGGACATCTGGAAGAATTCAGCCAATTAATCG,Distal Intergenic,12,55565239,55566896,1658,1,Aldoart2-201,1774,Aldoart2-201,Aldoart2,1774,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,79459,ENSMUSG00000063129,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27337,cg19493417,0.00000554,0.00001,0.554481372,0.579649248,gain,ns,0.0000307,0.000017,1.808829963,0.071446149,pos,ns,-0.004469198,0.004975733,-0.898199025,0.369776532,neg,ns,0.432060655,0.0000196,0.000171115,0.114362,0.909024869,pos,ns,0.732074405,1700025C18Rik,1700025C18Rik_Intron,2,165089519,165089568,165089567,165089568,50,+,ATTATCTAAATTTGATAAGACAACTCAATTTCACTCCGTGTCTGTTACCG,"Intron (1700025C18Rik-201/1700025C18Rik, intron 2 of 2)",2,165078693,165090750,12058,2,1700025C18Rik-201,1182,1700025C18Rik-201,1700025C18Rik,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,72211,ENSMUSG00000078935,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2062,cg15416058,0.0000554,0.00000627,8.839267532,7.38E-17,gain,yes,-0.0000193,0.0000107,-1.808744663,0.071459439,neg,ns,0.004446912,0.003122119,1.424325089,0.155358232,pos,ns,0.80866573,-0.0000133,0.000107369,-0.123451408,0.901829652,neg,ns,0.128322199,Gm38154,Gm38154_Intron,3,17790961,17791010,17790961,17790962,50,-,CGCTTTGTGCTTCACAAGGAGAAAATGGCGAGTCCTATTGTGTTTAGGCC,"Intron (Mir124-2hg-204/Mir124-2hg-204, intron 1 of 2)",3,17670688,17671027,340,1,Gm38154-201,120322,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,15,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
16545,cg25637862,-0.000000716,0.000000968,-0.739871006,0.459938199,loss,ns,0.00000297,0.00000164,1.8085613,0.071488016,pos,ns,0.001306355,0.000481876,2.710976258,0.007082432,pos,ns,2.149817561,-0.0000363,0.0000166,-2.189655716,0.029294303,neg,ns,0.972795298,Camkmt,Camkmt_Intron,17,85394067,85394116,85394115,85394116,50,-,TACAAATAAAAGCATATTGTTACACTGATTGGCATTTGACAAACCTGTCG,"Intron (Camkmt-201/Camkmt, intron 5 of 10)",17,85090552,85458588,368037,1,Camkmt-201,303515,Camkmt-201,Camkmt,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,41,44,73582,ENSMUSG00000071037,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12729,cg21344752,0.0000598,0.00000679,8.804829351,9.43E-17,gain,yes,-0.0000209,0.0000115,-1.808170924,0.071548885,neg,ns,0.00061079,0.003379918,0.180711401,0.856712193,pos,ns,0.067165052,0.0000874,0.000116235,0.751646907,0.45283369,pos,ns,0.127916727,Rsrc1,Rsrc1_Promoter,3,66981899,66981948,66981947,66981948,50,-,TAAGATCTTTGACAATTCTTCCTGCGGAGAGTTCAGATCTGATAGCGACG,Promoter (<=1kb),3,66981390,67356559,375170,1,Rsrc1-206,509,Rsrc1-206;Rsrc1-207;Rsrc1-203;Rsrc1-208;Rsrc1-202;Rsrc1-201;Rsrc1-209;Rsrc1-205;Rsrc1-204;Shox2-203;Shox2-201;Shox2-202;Shox2-204;Shox2-205,Rsrc1;Rsrc1;Rsrc1;Rsrc1;Rsrc1;Rsrc1;Rsrc1;Rsrc1;Rsrc1;Shox2;Shox2;Shox2;Shox2;Shox2,0;-3722;0;0;0;0;0;0;-4030;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,3,37,66880,ENSMUSG00000034544,conserved gene but different region,3,66981837,66982094,258,*,258,14,0.554263566,0.714398734,0.054263566,0.00000017,CpGisland,TRUE,U3,Pr-B
24467,cg23595803,-0.00000174,0.00000162,-1.07710795,0.282269517,loss,ns,0.00000497,0.00000275,1.808111502,0.071558154,pos,ns,-0.000068,0.000805736,-0.08433687,0.932843035,neg,ns,0.030191427,0.00000962,0.0000277,0.347346604,0.728566642,pos,ns,0.960420163,Ago1,Ago1_threeUTR,4,126460354,126460403,126460402,126460403,50,+,TCTCCCCACTCACCATCAATGTTGAGCATCATCTTCCACATGGCAGGGCG,3' UTR,4,126435012,126468421,33410,2,Ago1-207,8018,Ago1-207;Ago1-201;Ago1-206;Ago1-202;Ago1-205;Ago1-203,Ago1;Ago1;Ago1;Ago1;Ago1;Ago1,0;0;0;0;0;-229,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,11,13,236511,ENSMUSG00000041530,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16795,cg20621101,-0.00000412,0.00000212,-1.946341097,0.052517006,loss,ns,-0.00000651,0.0000036,-1.807885965,0.071593345,neg,ns,-0.003933016,0.001054622,-3.729311794,0.000228247,neg,ns,3.641595662,0.0000942,0.0000363,2.596866293,0.009856342,pos,ns,0.05182856,Rps6kb1,Rps6kb1_fiveUTR,11,86544003,86544052,86544003,86544004,50,-,CGACAGAAGTTTTCAGCTGTCACTTCTAACAGCTGAGCGCTTCCTAGGAG,Promoter (<=1kb),11,86498871,86544805,45935,2,Rps6kb1-207,753,Rps6kb1-207;Rps6kb1-201;Rps6kb1-202;Rps6kb1-204;Tubd1-205;Tubd1-201;Tubd1-202;Tubd1-203,Rps6kb1;Rps6kb1;Rps6kb1;Rps6kb1;Tubd1;Tubd1;Tubd1;Tubd1,0;0;0;0;-939;-939;-939;-939,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,4,72508,ENSMUSG00000020516,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
26974,cg04934403,0.0000896,0.0000209,4.285794157,0.0000243,gain,ns,-0.0000642,0.0000355,-1.807730047,0.071617681,neg,ns,0.003686374,0.010408889,0.354156352,0.723462481,pos,ns,0.140583987,-0.001037686,0.000357961,-2.898881378,0.004012176,neg,ns,0.592376532,Trpc4ap,Trpc4ap_Exon,2,155639486,155639535,155639486,155639487,50,+,CGCTTCAGCAGGAACATCTGGTCTGCATAGGAGGTGGTCCCTCGGAGGAA,"Exon (Trpc4ap-201/Trpc4ap, exon 14 of 19)",2,155634271,155692384,58114,2,Trpc4ap-201,52849,Trpc4ap-201;Trpc4ap-202;Trpc4ap-210;Trpc4ap-206;Trpc4ap-209;Trpc4ap-207;Trpc4ap-205,Trpc4ap;Trpc4ap;Trpc4ap;Trpc4ap;Trpc4ap;Trpc4ap;Trpc4ap,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,56407,ENSMUSG00000038324,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6904,cg12327770,-0.0000149,0.0000268,-0.555436687,0.578996603,loss,ns,-0.0000822,0.0000455,-1.807508851,0.071652217,neg,ns,-0.004358984,0.013321239,-0.327220598,0.743721891,neg,ns,0.128589435,-0.000827955,0.000458116,-1.807302025,0.071684522,neg,ns,0.641348053,Rims2,Rims2_Exon,15,39452360,39452409,39452408,39452409,50,-,TCAGATTAAGGACTCTGGGGTAGATACGTGTAGTAGCACAACCCTTAACG,"Exon (Rims2-202/Rims2, exon 7 of 27)",15,39198332,39681940,483609,1,Rims2-202,254028,Rims2-202;Rims2-205;Rims2-201;Rims2-211;Rims2-206;Rims2-212,Rims2;Rims2;Rims2;Rims2;Rims2;Rims2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,Exon,16,19,116838,ENSMUSG00000037386,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24225,cg04730961,0.0000784,0.0000074,10.59571232,1.36E-22,gain,yes,-0.0000227,0.0000126,-1.807392794,0.071670343,neg,ns,-0.0000338,0.003681363,-0.009178772,0.992682406,neg,ns,0.003189675,-0.000129439,0.000126602,-1.022407247,0.307385378,neg,ns,0.546546013,Gm12902,Gm12902_Intergenic_downstream,4,124035764,124035813,124035812,124035813,50,-,AGAGGAGTGGATGATCTTTTATACTTAAAGTTCCCCCCTCTATAAAAGCG,Distal Intergenic,4,123926234,123926555,322,1,Gm12902-201,109579,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,34,34,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7783,cg02231368,0.0000219,0.00000661,3.313357022,0.001030985,gain,ns,0.0000203,0.0000112,1.80733493,0.071679382,pos,ns,0.00266007,0.003290719,0.808355162,0.419506052,pos,ns,0.37726177,0.000141464,0.000113168,1.250042237,0.21222695,pos,ns,0.74782871,Arhgap15,Arhgap15_Intron,2,44304809,44304858,44304809,44304810,50,-,CGGCAGAATAATTAATGAATGGTGTCCTTTGTGCTGGTAATAAAGACAAG,"Intron (Arhgap15-203/Arhgap15, intron 12 of 14)",2,43748824,44395953,647130,1,Arhgap15-203,555985,Arhgap15-203;Arhgap15-202;Arhgap15-201,Arhgap15;Arhgap15;Arhgap15,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,72,78,76117,ENSMUSG00000049744,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21348,cg20999737,-0.00000647,0.00000514,-1.258648666,0.209104305,loss,ns,-0.0000158,0.00000873,-1.807305153,0.071684034,neg,ns,-0.006266299,0.002558258,-2.449439524,0.01486101,neg,ns,1.827951677,0.000024,0.000088,0.272848096,0.785151652,pos,ns,0.878606218,Kcnc4,Kcnc4_Exon,3,107447644,107447693,107447644,107447645,50,-,CGTTTCTTGGGCAGCTTCTGCTTGGCCATGGCCAGGGAGTAGTACATGCC,"Exon (Kcnc4-201/Kcnc4, exon 2 of 4)",3,107438303,107459552,21250,2,Kcnc4-201,11859,Kcnc4-201;Kcnc4-202,Kcnc4;Kcnc4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,12,99738,ENSMUSG00000027895,conserved gene and region,3,107447472,107447645,174,*,174,12,0.632183908,0.693918245,0.068965517,0.00000013,CpGisland,TRUE,U11,Tr-P
18049,cg21372540,-0.00000226,0.00000309,-0.728779504,0.466686748,loss,ns,0.0000095,0.00000526,1.80708975,0.071717691,pos,ns,0.003338184,0.001540188,2.167387193,0.030966367,pos,ns,1.509109745,-0.000106284,0.000053,-2.006606166,0.045659747,neg,ns,0.943927353,Pola1,Pola1_Intron,X,93409571,93409620,93409571,93409572,50,-,CGATAAATGGACTCGCTTTGAATTGAAGTGAATGCACCCGTTTCCATCTG,"Intron (Pola1-201/Pola1, intron 35 of 36)",20,93304767,93632155,327389,2,Pola1-201,222535,Pola1-201,Pola1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,59,62,18968,ENSMUSG00000006678,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8764,cg15355909,-0.000016,0.00000949,-1.681800729,0.093614519,loss,ns,0.0000291,0.0000161,1.807068085,0.071721077,pos,ns,-0.002839267,0.004720912,-0.601423387,0.547997566,neg,ns,0.26122137,0.000104783,0.000162352,0.645404572,0.519142437,pos,ns,0.80290223,Dscaml1,Dscaml1_Intron,9,45720353,45720402,45720401,45720402,50,+,TTATCATTTAAATGCTCATAAAAATTAGAGTTGCCTCTTGTGGGGCAACG,"Intron (Dscaml1-211/Dscaml1, intron 17 of 32)",9,45430291,45753262,322972,1,Dscaml1-211,290062,Dscaml1-211;Dscaml1-201;Dscaml1-210;Dscaml1-207,Dscaml1;Dscaml1;Dscaml1;Dscaml1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,32,114873,ENSMUSG00000032087,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6499,cg10141691,-0.00000199,0.00000238,-0.838164104,0.402584322,loss,ns,0.0000073,0.00000404,1.806927215,0.071743096,pos,ns,0.002410763,0.001183366,2.037208308,0.042478267,pos,ns,1.371833207,-0.0000799,0.0000407,-1.963424723,0.050490468,neg,ns,0.965038896,Zfp536,Zfp536_Intron,7,37515765,37515814,37515813,37515814,50,+,AAACGACATTCGGGAGATGTTCTGAACGACATTTTAAGGCAGGTGTTCCG,"Intron (Zfp536-211/Zfp536, intron 1 of 3)",7,37318024,37568390,250367,2,Zfp536-211,52576,Zfp536-211;Zfp536-202;Zfp536-201;Zfp536-203;Zfp536-206,Zfp536;Zfp536;Zfp536;Zfp536;Zfp536,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,73,112,243937,ENSMUSG00000043456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16293,cg02055262,0.00000334,0.00000226,1.476309571,0.140875855,gain,ns,-0.00000694,0.00000384,-1.806739524,0.071772443,neg,ns,-0.001070488,0.001124963,-0.951576633,0.342053057,neg,ns,0.465906524,0.0000256,0.0000387,0.662726083,0.507998435,pos,ns,0.951225295,Lrpprc,Lrpprc_Exon,17,84716714,84716763,84716714,84716715,50,-,CGCTAAAAGAAGCAGACATTTAGAAAGGAATTACTGACATGCTTCTGATA,"Exon (Lrpprc-201/Lrpprc, exon 31 of 38)",17,84705247,84790558,85312,2,Lrpprc-201,73795,Lrpprc-201;Lrpprc-207,Lrpprc;Lrpprc,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,15,72416,ENSMUSG00000024120,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15630,cg08638638,0.0000864,0.0000152,5.676391779,3.16E-08,gain,yes,-0.0000467,0.0000259,-1.806518968,0.07180694,neg,ns,0.015955729,0.007574814,2.106418664,0.035971512,pos,ns,1.444041301,-0.000693381,0.000260497,-2.661758075,0.008178621,neg,ns,0.190669348,Nfib,Nfib_Intron,4,82404399,82404448,82404447,82404448,50,+,CTGTGTATCTCTACAAAGTTTATCTCCACTGCCAAGAGTGTCTTGGCACG,"Intron (Nfib-201/Nfib, intron 2 of 11)",4,82290173,82505308,215136,2,Nfib-201,100860,Nfib-201;Nfib-203;Nfib-202;Nfib-205;Nfib-206;Nfib-204;Nfib-207;Nfib-209;Nfib-210,Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,66,18028,ENSMUSG00000008575,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U5,En-Sd
25088,cg18171163,-0.00000441,0.00000363,-1.213578142,0.225832672,loss,ns,0.0000112,0.00000617,1.806516145,0.071807382,pos,ns,0.004173212,0.001808618,2.307403727,0.021690857,pos,ns,1.663723297,-0.000143567,0.0000622,-2.308222743,0.021644674,neg,ns,0.921144829,Trmt6,Trmt6_Exon,2,132810203,132810252,132810251,132810252,50,-,TACTTAATTTTTCCAGGTTCTCTTGCATAATACATAATTGAAAGAATACG,Promoter (<=1kb),2,132804207,132810635,6429,2,Trmt6-206,383,Trmt6-206;Trmt6-201;Trmt6-205;Trmt6-204;Trmt6-203;Trmt6-202,Trmt6;Trmt6;Trmt6;Trmt6;Trmt6;Trmt6,0;0;0;0;0;5761,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,66926,ENSMUSG00000037376,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1600,cg16972496,0.000000846,0.00000436,0.194073989,0.846245059,gain,ns,0.0000134,0.0000074,1.806307686,0.07184,pos,ns,0.007852914,0.002169161,3.620254577,0.000343642,pos,ns,3.463894301,-0.00024266,0.0000746,-3.252935746,0.001268177,neg,ns,0.906230021,Fam76b,Fam76b_Exon,9,13831066,13831115,13831114,13831115,50,-,GGACCACCTCAGACCTGTGAACAGTGCAAACAGCAATGTGCTTTTGATCG,"Exon (Fam76b-201/Fam76b, exon 4 of 10)",9,13827716,13846541,18826,1,Fam76b-201,3350,Cep57-206;Cep57-201;Cep57-209;Cep57-208;Cep57-205;Cep57-207;Fam76b-201;Fam76b-204;Fam76b-202,Cep57;Cep57;Cep57;Cep57;Cep57;Cep57;Fam76b;Fam76b;Fam76b,-4075;-3959;-4014;-4111;-4041;-4013;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,3,72826,ENSMUSG00000037808,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
700,cg22487274,0.00000418,0.00000265,1.575524562,0.116155351,gain,ns,-0.00000813,0.0000045,-1.806148828,0.071864866,neg,ns,-0.00154449,0.001318947,-1.171002474,0.242497102,neg,ns,0.615293447,0.0000217,0.0000454,0.478910799,0.632339712,pos,ns,0.94505376,Pxk,Pxk_Exon,14,8146208,8146257,8146256,8146257,50,-,TCTACGCTGTCTTGTGAAGCCTGTAAAAATGGCATGCCTACCATCTCCCG,"Exon (Pxk-201/Pxk, exon 12 of 18)",14,8098211,8165117,66907,1,Pxk-201,47997,Pxk-201;Pxk-202;Pxk-204;Pxk-205,Pxk;Pxk;Pxk;Pxk,0;0;47956;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,218699,ENSMUSG00000033885,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6104,cg19762578,-0.0000321,0.0000101,-3.171978429,0.001665679,loss,ns,-0.000031,0.0000172,-1.806117969,0.071869697,neg,ns,-0.010202715,0.005036225,-2.025865453,0.043634814,neg,ns,1.360166869,0.00026889,0.000173195,1.552524758,0.121556997,pos,ns,0.799836351,Morn5,Morn5_Intron,2,36067229,36067278,36067277,36067278,50,+,ACCATCCTCAAAGAATATCCTGATCATCAGAAATGCCGTCAAGATTCCCG,"Intron (Morn5-201/Morn5, intron 4 of 4)",2,36049458,36079718,30261,1,Morn5-201,17771,Morn5-201,Morn5,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,75495,ENSMUSG00000026894,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19182,cg07805952,-0.0000206,0.0000045,-4.572918569,0.00000696,loss,ns,-0.0000138,0.00000764,-1.806095992,0.071873138,neg,ns,-0.007145579,0.002238917,-3.19153302,0.001560302,neg,ns,2.806791406,-0.000125046,0.000077,-1.624058794,0.105379583,neg,ns,0.816671589,Thra,Thra_threeUTR,11,98764490,98764539,98764538,98764539,50,+,CCACTCTTCCTCGAGGTCTTTGAGGATCAGGAAGTCTAAAGCCTCAGGCG,3' UTR,11,98741811,98769006,27196,1,Thra-201,22679,Nr1d1-201;Nr1d1-202;Thra-201;Thra-202;Thra-203,Nr1d1;Nr1d1;Thra;Thra;Thra,0;5887;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,18,21833,ENSMUSG00000058756,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4685,cg16619085,-0.0000259,0.00000753,-3.439059295,0.000663628,loss,ns,0.0000231,0.0000128,1.806081843,0.071875353,pos,ns,-0.002728878,0.003747534,-0.728179672,0.467053278,neg,ns,0.330633575,0.000137623,0.000128877,1.06786063,0.286414247,pos,ns,0.648098993,Mecom,Mecom_Intron,3,30106673,30106722,30106673,30106674,50,+,CGTGAGAGAGCAGGACGCGGGCTGCTCTAGTCAGGACTTATCGTCTATCA,"Intron (Mecom-212/Mecom, intron 1 of 15)",3,29951299,30509733,558435,2,Mecom-212,403011,Mecom-212;Mecom-203;Mecom-210;Mecom-213;Mecom-207;Mecom-208;Mecom-211,Mecom;Mecom;Mecom;Mecom;Mecom;Mecom;Mecom,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,80,14013,ENSMUSG00000027684,conserved gene and region,3,30106598,30106734,137,*,137,14,0.613138686,1.097254005,0.102189781,3.95E-11,CpGisland,TRUE,U9,En-Pp
15277,cg07843568,0.0000673,0.0000129,5.236386982,0.000000303,gain,yes,-0.0000394,0.0000218,-1.805855361,0.071910819,neg,ns,0.013182126,0.006399183,2.059970261,0.040235849,pos,ns,1.395386827,-0.000506561,0.000220067,-2.301843506,0.022006671,neg,ns,0.391406481,Midn,Midn_Exon,10,80153656,80153705,80153704,80153705,50,+,ATTTAAGCGTCCGTGGCACCGACAGGGACCCCAGAGCCCAGAGAGGGGCG,"Exon (Midn-201/Midn, exon 5 of 9)",10,80148272,80158367,10096,1,Midn-202,5384,Midn-202;Midn-201;Midn-206;Midn-203;Midn-207;Midn-205;Midn-204,Midn;Midn;Midn;Midn;Midn;Midn;Midn,0;0;4544;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,59090,ENSMUSG00000035621,conserved gene and region,10,80153561,80153782,222,*,222,15,0.662162162,0.617810761,0.067567568,2.83E-09,CpGisland,TRUE,U6,En-Sp
23163,cg16892257,-0.0000203,0.00000829,-2.454189291,0.014669923,loss,ns,-0.0000254,0.0000141,-1.805746457,0.071927879,neg,ns,-0.016354182,0.004126645,-3.963069922,0.0000919,neg,ns,4.036728639,0.000535342,0.000141915,3.772275752,0.000193746,pos,ns,0.815600496,Rnf220,Rnf220_Intron,4,117376265,117376314,117376265,117376266,50,-,CGTGCGATAATATTTGTTTTTTCTAATGAGTCTCTTGTGATCCATTCCAG,"Intron (Rnf220-201/Rnf220, intron 2 of 14)",4,117271463,117497052,225590,2,Rnf220-201,120738,Rnf220-201;Rnf220-202;Rnf220-207,Rnf220;Rnf220;Rnf220,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11964,cg21115959,0.0000734,0.00000537,13.66209554,1.38E-33,gain,yes,-0.0000165,0.00000913,-1.805733802,0.071929861,neg,ns,0.003365939,0.00267406,1.258737103,0.209072392,pos,ns,0.679703312,0.000192425,0.000092,2.092473738,0.037209107,pos,ns,0.069470137,Tbr1,Tbr1_Exon,2,61804950,61804999,61804998,61804999,50,-,TAAACTCTCTCCTGTCTTGGACGGGGTCTCTGAGCTTCGTCACAGTTTCG,Promoter (<=1kb),2,61804453,61814114,9662,1,Tbr1-201,497,Psmd14-201;Psmd14-208;Psmd14-202;Tbr1-204;Tbr1-201;Tbr1-202;Tbr1-203,Psmd14;Psmd14;Psmd14;Tbr1;Tbr1;Tbr1;Tbr1,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,24,27,21375,ENSMUSG00000035033,conserved gene and region,2,61804938,61805248,311,*,311,21,0.620578778,0.763323983,0.067524116,9.07E-13,CpGisland,TRUE,U13,Hc-P
23539,cg18295954,0.0000369,0.00000329,11.22705208,9.03E-25,gain,yes,-0.0000101,0.00000559,-1.805581485,0.071953727,neg,ns,0.004181224,0.001636932,2.554304622,0.011117905,pos,ns,1.953977056,-0.0000508,0.0000563,-0.902246511,0.367626418,neg,ns,0.077298008,Sp8,Sp8_Promoter,12,118840913,118840962,118840913,118840914,50,+,CGTGTTCACTGGGCCGAAATAACGTGGCCATTATGGCCTGAAATGGGCCA,Promoter (5-6kb),12,118846329,118852576,6248,1,Sp8-201,-5367,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,27,29,320145,ENSMUSG00000048562,conserved gene and region,12,118840863,118841021,159,*,159,10,0.503144654,0.999371465,0.062893082,0.00000467,CpGisland,TRUE,U13,Hc-P
6258,cg05812699,-0.00000113,0.00000435,-0.260626436,0.79455364,loss,ns,0.0000133,0.00000739,1.805568584,0.071955749,pos,ns,0.009738857,0.002164922,4.49847888,0.00000969,pos,ns,5.013725399,-0.000360896,0.0000745,-4.847397601,0.00000198,neg,ns,0.899882752,Tenm2,Tenm2_Intron,11,36636152,36636201,36636152,36636153,50,-,CGGTGTTATTAATACCCAAATGGGCACCAAAACAAACAGCATTGATGGAA,"Intron (Tenm2-202/Tenm2, intron 4 of 30)",11,36006656,37235882,1229227,2,Tenm2-202,599681,Tenm2-202;Tenm2-208;Tenm2-201;Tenm2-204;Tenm2-205,Tenm2;Tenm2;Tenm2;Tenm2;Tenm2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,47,84,23964,ENSMUSG00000049336,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11041,cg20296505,-0.0000138,0.00000362,-3.826687965,0.000157093,loss,ns,0.0000111,0.00000615,1.805450958,0.071974184,pos,ns,0.002524383,0.001800329,1.402178667,0.161862447,pos,ns,0.790853899,-0.000171155,0.0000619,-2.764442396,0.006043378,neg,ns,0.936803642,Gm13518,Gm13518_Intergenic_downstream,2,56441831,56441880,56441879,56441880,50,-,ATGAACATTGTAAATATTCACAGATCACATCATTGACGTGTAATGTGCCG,Distal Intergenic,2,56039853,56040085,233,1,Gm13518-201,402027,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,37,37,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23747,cg01136078,0.0000127,0.0000157,0.807539219,0.419975073,gain,ns,0.0000481,0.0000267,1.805421231,0.071978843,pos,ns,0.01303623,0.007812917,1.668548483,0.096216529,pos,ns,1.016750316,-0.000202562,0.000268686,-0.753898421,0.451482458,neg,ns,0.435051155,Foxo6,Foxo6_threeUTR,4,120267094,120267143,120267142,120267143,50,-,TTTATTCATGAAAATATGCTGTACAATGCACTCTACACAGCCTCGACACG,3' UTR,4,120267079,120287349,20271,2,Foxo6-201,20206,Foxo6-201,Foxo6,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,42,329934,ENSMUSG00000052135,conserved gene but different region,4,120267131,120267236,106,*,106,19,0.745283019,1.388965517,0.179245283,2.86E-20,CpGisland,TRUE,U13,Hc-P
17256,cg08899884,0.00018534,0.0000132,14.04553556,5.09E-35,gain,yes,-0.0000405,0.0000224,-1.80513933,0.072023043,neg,ns,0.004212126,0.006567603,0.641349017,0.521769833,pos,ns,0.282521034,-0.000728617,0.000225859,-3.225975851,0.001389561,neg,ns,0.2361564,Efna3,Efna3_Exon,3,89316083,89316132,89316131,89316132,50,-,GACGAACACCTTCATCCTCAGACACTTCCAGTGCAGGTTGTGAGTGGGCG,"Exon (Gm15998-201/Gm15998-201, exon 2 of 3)",3,89313899,89322965,9067,2,Efna3-201,6833,Efna3-201;Efna3-203;Efna3-202,Efna3;Efna3;Efna3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,6,13638,ENSMUSG00000028039,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
20484,cg24417649,0.0000193,0.00000497,3.874004772,0.000130648,gain,ns,-0.0000152,0.00000845,-1.804866499,0.072065842,neg,ns,-0.001754369,0.002475264,-0.708760254,0.479005909,neg,ns,0.319659129,-0.0000668,0.0000851,-0.784356841,0.43342969,neg,ns,0.910442922,Hoxc4,Hoxc4_Intergenic_downstream,15,103076222,103076271,103076222,103076223,50,-,CGTACTCTTTTATCACTTAGATGGACAGAATATAATTGGTGTGCTGAACG,Distal Intergenic,15,103034395,103036852,2458,1,Hoxc4-201,41876,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,32,91,15423,ENSMUSG00000075394,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10604,cg23120132,-0.0000151,0.00000358,-4.207676664,0.0000338,loss,ns,-0.000011,0.00000608,-1.804352444,0.072146538,neg,ns,-0.002592927,0.001781114,-1.455789593,0.146462753,neg,ns,0.834272807,-0.0000399,0.0000613,-0.651738478,0.515052783,neg,ns,0.952731697,Acin1,Acin1_Exon,14,54650904,54650953,54650904,54650905,50,-,CGGGGAAGAAGGACCTTGTAATAAATAATATTCTGCACATCAAATCACTT,"Exon (Acin1-214/Acin1, exon 3 of 3)",14,54642161,54653616,11456,2,Acin1-208,2663,Acin1-208;Acin1-216;Acin1-202;Acin1-201;Acin1-219;Acin1-218;Acin1-221;Acin1-224;Acin1-203;Acin1-205;Acin1-211;Acin1-225;Acin1-207;Acin1-204;Acin1-226;Acin1-213;Acin1-214;Acin1-209;Acin1-220;Gm17606-201,Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Gm17606,0;0;0;0;0;0;0;0;0;0;-4857;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,22,56215,ENSMUSG00000022185,conserved gene and region,14,54650681,54650905,225,*,225,16,0.6,0.802854594,0.071111111,3.42E-10,CpGisland,TRUE,U10,Tr-S
26888,cg04130591,-0.00000551,0.00000258,-2.135712461,0.033486187,loss,ns,0.0000079,0.00000438,1.804325726,0.072150734,pos,ns,0.001751463,0.001283487,1.364612807,0.173364485,pos,ns,0.761039867,-0.000062,0.0000441,-1.405645775,0.160830766,neg,ns,0.944108939,Prdm16,Prdm16_Intron,4,154456715,154456764,154456715,154456716,50,-,CGCAAAATCTGCATAAACCTTCAGGGTTTAATTCAAGCAGAGACCTTTCA,"Intron (Prdm16-201/Prdm16, intron 3 of 16)",4,154316125,154636866,320742,2,Prdm16-201,180102,Prdm16-201;Prdm16-202;Prdm16-203;Prdm16-204;Prdm16-205;Prdm16-206;Prdm16-210;Prdm16-207,Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,32,70673,ENSMUSG00000039410,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18330,cg23040417,-0.00000344,0.00000202,-1.707700268,0.088693131,loss,ns,0.00000618,0.00000343,1.804309438,0.072153293,pos,ns,0.003482435,0.001003547,3.470125122,0.000593965,pos,ns,3.226239347,-0.000108308,0.0000345,-3.138276372,0.001862865,neg,ns,0.946637769,Tbca,Tbca_Intron,13,94817122,94817171,94817170,94817171,50,+,AAATATGACAAAGTGTTTTAGGCTTTCTGAGCAAAGCAACACACATTACG,"Intron (Tbca-201/Tbca, intron 1 of 3)",13,94788910,94842922,54013,1,Tbca-201,28212,Tbca-201;Tbca-203;Tbca-204,Tbca;Tbca;Tbca,0;0;-563,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,9,21371,ENSMUSG00000042043,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24809,cg26457229,-0.0000154,0.00000944,-1.627692028,0.104606099,loss,ns,0.000029,0.000016,1.804300771,0.072154654,pos,ns,0.002997066,0.004700667,0.63758309,0.524215733,pos,ns,0.280489949,-0.000396257,0.000161656,-2.451245276,0.014788105,neg,ns,0.506320726,Gm4410,Gm4410_Intron,3,128613799,128613848,128613799,128613800,50,-,CGATTACCCAGGGACAAGATACAATTTACATTACTTGAAGCCACAGGACA,"Intron (Gm43824-201/Gm43824-201, intron 1 of 4)",3,128839836,128840521,686,1,Gm4410-201,-226037,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,13,100043393,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3262,cg08866491,0.0000235,0.00000268,8.772362075,1.19E-16,gain,yes,-0.0000082,0.00000455,-1.804241501,0.072163964,neg,ns,0.002525124,0.001332072,1.895635957,0.058938138,pos,ns,1.229603585,-0.0000879,0.0000458,-1.919840062,0.055795637,neg,ns,0.069625271,Sfrp1,Sfrp1_Exon,8,23411988,23412037,23412036,23412037,50,-,CCACAACGTGGGCTACAAGAAGATGGTGCTGCCCAACCTGCTGGAGCACG,Promoter (<=1kb),8,23411502,23449632,38131,1,Sfrp1-201,486,Sfrp1-201,Sfrp1,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,20377,ENSMUSG00000031548,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
8309,cg15486257,0.0000682,0.0000125,5.474370533,9.08E-08,gain,yes,-0.0000382,0.0000212,-1.804206833,0.07216941,neg,ns,-0.001506533,0.006197504,-0.243087011,0.808098761,neg,ns,0.092535559,0.00033857,0.000213132,1.588546601,0.113182142,pos,ns,0.65343141,Zeb2,Zeb2_Intron,2,45000127,45000176,45000127,45000128,50,+,CGAGCGCCATTGAGGGACCAGCGCTCATATGTTGCTGAGTTGCATAAACA,"Intron (Zeb2-212/Zeb2, intron 7 of 10)",2,44983632,45117395,133764,2,Zeb2-212,117219,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-227;Zeb2-216;Zeb2-229;Zeb2-218;Zeb2-222,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24684,cg01712842,0.00010363,0.0000065,15.93748594,3.47E-42,gain,yes,-0.0000199,0.000011,-1.803693107,0.07225015,neg,ns,0.004154198,0.00323625,1.283645418,0.200224712,pos,ns,0.698482323,0.0000685,0.000111294,0.615675018,0.538560777,pos,ns,0.202714078,Neurog2,Neurog2_Promoter,3,127625765,127625814,127625813,127625814,50,-,TAGAACTCAACAGGAGTAAAACTAAATCCTCGTTTAAGTGTATTTATCCG,Promoter (7-8kb),3,127633135,127635631,2497,1,Neurog2-201,-7370,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,13,14,11924,ENSMUSG00000027967,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
10957,cg20705350,-0.0000128,0.00000526,-2.440843439,0.015212447,loss,ns,-0.0000161,0.00000894,-1.803613197,0.072262716,neg,ns,-0.008128752,0.002619832,-3.102776027,0.002093707,neg,ns,2.679084027,0.000218788,0.0000901,2.428387376,0.015734739,pos,ns,0.894819686,Tcf7l2,Tcf7l2_Intron,19,55914886,55914935,55914886,55914887,50,-,CGGCTTCAAAGGGAGCGAGATCATGTATAAACCATAATGTGGGTGCACCG,"Intron (Tcf7l2-213/Tcf7l2, intron 7 of 13)",19,55741820,55933229,191410,1,Tcf7l2-213,173066,Tcf7l2-213;Tcf7l2-201;Tcf7l2-208;Tcf7l2-211;Tcf7l2-212;Tcf7l2-206;Tcf7l2-204;Tcf7l2-205;Tcf7l2-222;Tcf7l2-215;Tcf7l2-214;Tcf7l2-207;Tcf7l2-202;Tcf7l2-209;Tcf7l2-210;Tcf7l2-217;Tcf7l2-220;Tcf7l2-218;Tcf7l2-203;Tcf7l2-216;Tcf7l2-219;Tcf7l2-221,Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,55,88,21416,ENSMUSG00000024985,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12505,cg11851831,0.000104308,0.00000809,12.8994341,9.08E-31,gain,yes,-0.0000248,0.0000137,-1.803300405,0.072311919,neg,ns,-0.001532336,0.004024604,-0.380741986,0.703655485,neg,ns,0.152639922,0.00023238,0.000138406,1.678976372,0.094164258,pos,ns,0.772378848,Fzd5,Fzd5_Exon,1,64735058,64735107,64735106,64735107,50,+,TGCCCACCACCAGGCACATGAAGTACTTGAGCATGAGCACCCAGTACTCG,"Exon (Fzd5-201/Fzd5, exon 2 of 2)",1,64730558,64737751,7194,2,Fzd5-201,2644,Fzd5-201;Fzd5-202,Fzd5;Fzd5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,14367,ENSMUSG00000045005,conserved gene and region,1,64735106,64735354,249,*,249,19,0.630522088,0.773039216,0.076305221,1.44E-12,CpGisland,TRUE,NA,NRS
3362,cg25959798,-0.00000162,0.00000311,-0.522057686,0.602002992,loss,ns,0.00000952,0.00000528,1.803254791,0.072319097,pos,ns,0.003887313,0.00154702,2.512775301,0.01248583,pos,ns,1.903582581,-0.000136775,0.0000532,-2.570872824,0.010610613,neg,ns,0.935539806,Papolg,Papolg_threeUTR,11,23862670,23862719,23862718,23862719,50,-,AAAAGATGGTATCTTACAGTACATACAAAAATACTCTGAAAATACATACG,3' UTR,11,23862646,23895253,32608,2,Papolg-201,32534,Papolg-201;Papolg-203;Papolg-204,Papolg;Papolg;Papolg,0;5751;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,9,216578,ENSMUSG00000020273,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17695,cg14951474,0.0000134,0.00000206,6.513482839,2.96E-10,gain,yes,-0.00000632,0.0000035,-1.803197313,0.072328142,neg,ns,0.000158043,0.001026801,0.153918155,0.87777442,pos,ns,0.05661708,0.0000128,0.0000353,0.362117792,0.717510732,pos,ns,0.03607892,Zic4,Zic4_threeUTR,9,91387086,91387135,91387134,91387135,50,-,GAGTTTGACGGTGCATCAGCATGCCGCGTTAGGCTCGCCATGGAAATACG,3' UTR,9,91368970,91387793,18824,1,Zic4-204,18116,Zic4-204;Zic4-209;Zic4-205;Zic4-201;Zic4-202,Zic4;Zic4;Zic4;Zic4;Zic4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,threeUTR,18,55,22774,ENSMUSG00000036972,conserved gene and region,9,91387047,91387219,173,*,173,16,0.549132948,1.250225836,0.092485549,5.72E-12,CpGisland,TRUE,U13,Hc-P
20155,cg23877875,0.00000197,0.00000112,1.758255029,0.079690905,gain,ns,-0.00000344,0.00000191,-1.803170373,0.072332382,neg,ns,-0.000517389,0.000558311,-0.926705615,0.354800301,neg,ns,0.450016021,0.0000186,0.0000192,0.967291754,0.334152231,pos,ns,0.019061053,Calcoco1,Calcoco1_Intergenic_upstream,15,102746946,102746995,102746994,102746995,50,+,CGGTGGAACGTTTTAATTAGGCCTGAACAATAAACAAGCTAAACGAGGCG,Distal Intergenic,15,102706777,102722178,15402,2,Calcoco1-201,-24768,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,20,29,67488,ENSMUSG00000023055,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
25501,cg11711038,0.00000946,0.00000323,2.927897941,0.00366532,gain,ns,-0.00000989,0.00000549,-1.803109072,0.07234203,neg,ns,0.001437025,0.001607383,0.894015034,0.372007397,pos,ns,0.429448425,-0.0000476,0.0000553,-0.86172455,0.389505177,neg,ns,0.946055414,Mgmt,Mgmt_Intron,7,137005285,137005334,137005285,137005286,50,+,CGCAGTGCCTCTGTGCTAAGCACCCAAAACTCTAGGGGACTGGCACTAAT,"Intron (Mgmt-201/Mgmt, intron 2 of 4)",7,136894614,137130266,235653,1,Mgmt-201,110671,Mgmt-201,Mgmt,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,16,17314,ENSMUSG00000054612,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13681,cg22850070,0.00000538,0.00000909,0.592281015,0.554094169,gain,ns,0.0000278,0.0000154,1.803000575,0.072359109,pos,ns,0.003492979,0.004523818,0.772130789,0.440625196,pos,ns,0.355930672,0.000162785,0.000155574,1.046350197,0.29621454,pos,ns,0.828101913,Irx1,Irx1_Intergenic_upstream,13,72029099,72029148,72029099,72029100,50,+,CGTAGACAAGAATTTAATGATTTAATTACAGTTGTTAGCCCTTTTTTGCG,Distal Intergenic,13,71957921,71963723,5803,2,Irx1-201,-65376,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,8,16371,ENSMUSG00000060969,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7123,cg16846234,-0.00000423,0.00000404,-1.045385405,0.296659328,loss,ns,0.0000124,0.00000687,1.802551757,0.072429797,pos,ns,0.00046837,0.002012774,0.232698538,0.816149063,pos,ns,0.088230514,0.0000593,0.0000692,0.856296068,0.392495442,pos,ns,0.915681951,Gm5973,Gm5973_Intergenic_upstream,1,41121015,41121064,41121063,41121064,50,-,CTTATTATAAAACAAAACAGTGTTAAGTCAAAGTACCTGATTACAATTCG,Distal Intergenic,1,40863737,40864232,496,2,Gm5973-201,-256832,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,18,18,546733,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22237,cg18705698,0.000028,0.00000533,5.242578419,0.000000294,gain,yes,0.0000163,0.00000906,1.802511109,0.072436201,pos,ns,0.005019053,0.002655168,1.890295731,0.059651008,pos,ns,1.224382214,-0.000088,0.0000913,-0.964285901,0.335654216,neg,ns,0.108288019,Aspg,Aspg_Exon,12,112130907,112130956,112130955,112130956,50,-,AACAGTTCTGTAGCGCAATTGTGAAATGTTTAGGACCACTAGACCCGGCG,"Exon (Mir203-201/Mir203-201, exon 1 of 1)",12,112121152,112127559,6408,1,Aspg-205,9804,Aspg-201;Aspg-205,Aspg;Aspg,24228;9755,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,104816,ENSMUSG00000037686,mapped to different genes,12,112130952,112131165,214,*,214,28,0.742990654,0.954444091,0.130841122,3.30E-25,CpGisland,TRUE,NA,NRS
22671,cg18315873,-0.00000106,0.00000196,-0.540820943,0.589019389,loss,ns,0.00000601,0.00000334,1.802332002,0.072464428,pos,ns,0.002511431,0.00097753,2.569161146,0.010662046,pos,ns,1.972159445,-0.0000625,0.0000336,-1.858813823,0.06400106,neg,ns,0.949423037,BC052040,BC052040_Intron,2,115658855,115658904,115658903,115658904,50,-,ATTATGATTCCTAGTAAGACAAGAACCTTAATGTTCACTGTTTGCCTTCG,"Intron (BC052040-203/BC052040, intron 5 of 10)",2,115581716,115778768,197053,1,BC052040-203,77139,BC052040-203;BC052040-201,BC052040;BC052040,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,37,49,399568,ENSMUSG00000040282,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21155,cg16786246,0.0000521,0.00000608,8.570623306,4.95E-16,gain,yes,0.0000186,0.0000103,1.802235643,0.072479617,pos,ns,0.015470337,0.003025007,5.114149089,0.000000553,pos,ns,6.25724377,-0.000279949,0.00010403,-2.691046723,0.007509251,neg,ns,0.123449727,Gm17304,Gm17304_Exon,5,106574960,106575009,106575008,106575009,50,-,CCAAAATGAGCTGTGATATCCTTTTGATGGCTATAATTTATTCCAAATCG,"Exon (Gm29464-201/Gm29464-201, exon 1 of 1)",5,106609098,106609201,104,1,Gm17304-201,-34138,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,35,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9680,cg08255799,-0.0000508,0.00000905,-5.606051947,4.58E-08,loss,yes,0.0000277,0.0000154,1.802023427,0.072513079,pos,ns,-0.007958332,0.004506197,-1.766086271,0.078365594,neg,ns,1.105874568,0.0000393,0.000154968,0.253552276,0.800009544,pos,ns,0.693779313,Gm7481,Gm7481_Intergenic_upstream,12,49945513,49945562,49945513,49945514,50,-,CGAGGCTCTTGACAGCTGATGGTTGGATTAAACAAAAAGACCAGTAACTT,Distal Intergenic,12,49840757,49841751,995,2,Gm7481-201,-103811,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,27,37,665077,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
610,cg09623707,0.0000446,0.000017,2.622027602,0.009172316,gain,ns,0.000052,0.0000289,1.801938113,0.072526535,pos,ns,0.05287123,0.00845691,6.251838172,1.34E-09,pos,ns,8.872414517,-0.001157932,0.000290832,-3.981438893,0.0000854,neg,ns,0.764275588,Celf2,Celf2_Intron,2,7252478,7252527,7252526,7252527,50,+,CCAATGAGATAACATTCCACTGTGTTTATTTTTCTCCCAATTGCCTTCCG,"Intron (Celf2-201/Celf2, intron 1 of 15)",2,6539694,7396000,856307,2,Celf2-201,143473,Celf2-201;Celf2-217;Celf2-209,Celf2;Celf2;Celf2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,24,14007,ENSMUSG00000002107,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11294,cg23807698,0.000025,0.00000401,6.221683195,1.59E-09,gain,yes,-0.0000123,0.00000682,-1.801718014,0.072561259,neg,ns,0.000301325,0.001997847,0.150824757,0.88021205,pos,ns,0.05541269,0.0000512,0.0000687,0.744885696,0.456905154,pos,ns,0.906812487,Gm13531,Gm13531_Intergenic_downstream,2,57378484,57378533,57378532,57378533,50,-,TGCTTACATTTGCATAGATAAAAACTGCTTTTCAATTTGTGAGTGGCACG,Distal Intergenic,2,57425167,57425709,543,2,Gm13531-201,47225,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,10,271788,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15826,cg21316226,-0.0000124,0.00000708,-1.746391193,0.081733491,loss,ns,0.0000217,0.000012,1.801672352,0.072568464,pos,ns,0.007228616,0.003525873,2.050163404,0.041189303,pos,ns,1.385215555,-0.000239618,0.000121254,-1.976154731,0.049023542,neg,ns,0.8834371,Washc4,Washc4_threeUTR,10,83588227,83588276,83588275,83588276,50,+,GTAGACGTTTTTGCTCCAGAATTTCGAAGGCCAAAGAATATACATCTCCG,3' UTR,10,83543752,83595434,51683,1,Washc4-202,44475,Washc4-202;Washc4-201;Washc4-203;Washc4-204,Washc4;Washc4;Washc4;Washc4,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,2,319277,ENSMUSG00000034560,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
67,cg00206304,-0.000000106,0.000000889,-0.119124508,0.905253873,loss,ns,0.00000272,0.00000151,1.801428514,0.072606952,pos,ns,0.000762947,0.000442305,1.724933538,0.085536134,pos,ns,1.067850381,-0.0000104,0.0000152,-0.683243913,0.494963047,neg,ns,0.985099168,Dnmt3a,Dnmt3a_threeUTR,12,3901626,3901675,3901674,3901675,50,-,GTGGGCATGGTGCGGCACCAGGGGAAGATCATGTACGTCGGGGACGTCCG,3' UTR,12,3807030,3914443,107414,1,Dnmt3a-201,94596,Dnmt3a-201;Dnmt3a-204;Dnmt3a-218;Dnmt3a-215;Dnmt3a-205;Dnmt3a-203;Dnmt3a-217;Dnmt3a-207;Dnmt3a-214;Dnmt3a-216,Dnmt3a;Dnmt3a;Dnmt3a;Dnmt3a;Dnmt3a;Dnmt3a;Dnmt3a;Dnmt3a;Dnmt3a;Dnmt3a,0;0;0;0;0;0;0;0;4206;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,7,13435,ENSMUSG00000020661,conserved gene but different region,12,3901587,3901738,152,*,152,12,0.605263158,0.865685809,0.078947368,2.89E-08,CpGisland,TRUE,U10,Tr-S
26645,cg18673669,-0.00000255,0.00000304,-0.839884442,0.401620446,loss,ns,-0.00000929,0.00000516,-1.801413209,0.072609368,neg,ns,-0.002122012,0.001510837,-1.404527315,0.16116303,neg,ns,0.792734575,0.0000143,0.000052,0.275162591,0.783374633,pos,ns,0.907981682,Pex14,Pex14_Intron,4,149074425,149074474,149074425,149074426,50,-,CGTAAAGAGGAGAAAAAATATTAATTAAATATAAGGTAATTGTGGAGTTG,"Intron (Pex14-201/Pex14, intron 2 of 8)",4,148960535,149099876,139342,2,Pex14-201,25402,Pex14-201;Pex14-202;Pex14-205;Pex14-203;Pex14-204,Pex14;Pex14;Pex14;Pex14;Pex14,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,41,48,56273,ENSMUSG00000028975,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8751,cg24823249,-0.000000198,0.00000193,-0.102843204,0.91815391,loss,ns,-0.0000059,0.00000327,-1.801341191,0.072620739,neg,ns,0.0000362,0.000959156,0.037736422,0.969922125,pos,ns,0.013263134,-0.0000526,0.000033,-1.593218956,0.112130151,neg,ns,0.058821797,Car11,Car11_Exon,7,45700451,45700500,45700451,45700452,50,+,CGAGGACTGGTGGAGCTACAAGGATAATCTCCAGGGAAACTTCGTGCCAG,Promoter (<=1kb),7,45699843,45704682,4840,1,Car11-201,608,Car11-201;Car11-204;Car11-205;Car11-202;Car11-203;Dbp-201;Dbp-204;Dbp-203,Car11;Car11;Car11;Car11;Car11;Dbp;Dbp;Dbp,0;0;0;0;0;-4588;-4769;-4784,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,12348,ENSMUSG00000003273,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
23055,cg19492291,-0.00000873,0.00000594,-1.467978167,0.143124034,loss,ns,-0.0000182,0.0000101,-1.801302387,0.072626867,neg,ns,-0.007396274,0.002958328,-2.500153433,0.01293027,neg,ns,1.888392412,0.000297507,0.000101737,2.924283687,0.003706977,pos,ns,0.889091993,Taok3,Taok3_fiveUTR,5,117241121,117241170,117241121,117241122,50,-,CGGGCCACGGCGATCCCAGGCCTGAGCCGCGGCCTACCCAGTCAGTTCAG,5' UTR,5,117120129,117275217,155089,1,Taok3-203,120992,Taok3-203;Taok3-210;Taok3-201;Taok3-205;Taok3-208;Taok3-202,Taok3;Taok3;Taok3;Taok3;Taok3;Taok3,0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,11,20,330177,ENSMUSG00000061288,conserved gene and region,5,117241107,117241224,118,*,118,13,0.661016949,1.011206328,0.110169492,8.62E-11,CpGisland,TRUE,U10,Tr-S
1486,cg01539965,-0.00000627,0.00000229,-2.738400669,0.006530879,loss,ns,-0.000007,0.00000389,-1.801290355,0.072628767,neg,ns,-0.001458112,0.001138875,-1.280309203,0.201393577,neg,ns,0.695954385,0.0000458,0.0000392,1.168806424,0.243379624,pos,ns,0.948201185,Ddx1,Ddx1_Exon,12,13227355,13227404,13227403,13227404,50,+,GTTCTACAGAAGATAATTGCTTGATCCATCTTATGTTCCTTGATTGCCCG,"Exon (Ddx1-201/Ddx1, exon 19 of 26)",12,13216973,13249213,32241,2,Ddx1-201,21809,Ddx1-201;Ddx1-202,Ddx1;Ddx1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,104721,ENSMUSG00000037149,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11672,cg02529156,-0.0000273,0.00000535,-5.110249528,0.000000564,loss,yes,0.0000164,0.00000908,1.801262376,0.072633185,pos,ns,0.00010352,0.002661071,0.03890157,0.968993905,pos,ns,0.013678955,0.000166183,0.0000915,1.815930269,0.07034698,pos,ns,0.916129162,Tanc1,Tanc1_Exon,2,59806331,59806380,59806331,59806332,50,-,CGCCAGCAGACCATGGAGCTTGGCCACCACATCCTGAAGGCGCACATTTT,"Exon (Tanc1-203/Tanc1, exon 15 of 27)",2,59612042,59845717,233676,1,Tanc1-203,194289,Tanc1-203;Tanc1-201;Tanc1-208;Tanc1-202;Tanc1-211,Tanc1;Tanc1;Tanc1;Tanc1;Tanc1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,66860,ENSMUSG00000035168,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17749,cg23617854,-0.00000998,0.00000315,-3.166207066,0.001698015,loss,ns,0.00000964,0.00000535,1.801242405,0.072636339,pos,ns,0.000123911,0.00156855,0.07899725,0.937085779,pos,ns,0.028220653,-0.0000427,0.0000539,-0.792472893,0.428691025,neg,ns,0.946635499,Fto,Fto_Intron,8,91622587,91622636,91622635,91622636,50,-,TATCTCAATATGAAAACAGAGCAATTTCAACTCATATCAGGTTATGATCG,"Intron (Fto-201/Fto, intron 8 of 8)",8,91313525,91668439,354915,1,Fto-201,309062,Fto-201;Fto-205,Fto;Fto,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,26,26383,ENSMUSG00000055932,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21997,cg14037413,0.00000182,0.0000069,0.263120643,0.792632388,gain,ns,0.0000211,0.0000117,1.801211491,0.072641222,pos,ns,-0.001491691,0.003434189,-0.434364938,0.664325631,neg,ns,0.177618992,0.000239025,0.000118101,2.023897926,0.043838124,pos,ns,0.035621531,Zfp143,Zfp143_fiveUTR,7,110061746,110061795,110061746,110061747,50,+,CGAAGGAATTGTTGGAAAATTTTCTCGGAGGTTCGTATATAAATGTGTTT,Promoter (<=1kb),7,110061217,110094808,33592,1,Zfp143-204,529,Zfp143-204;Zfp143-205;Zfp143-201;Zfp143-202,Zfp143;Zfp143;Zfp143;Zfp143,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,7,20841,ENSMUSG00000061079,conserved gene and region,7,110061325,110061866,542,*,542,40,0.590405904,0.850196078,0.073800738,2.91E-25,CpGisland,TRUE,U1,Pr-A
8466,cg10277631,-0.0000085,0.00000405,-2.098366412,0.036681764,loss,ns,-0.0000124,0.00000688,-1.801144979,0.072651727,neg,ns,-0.000879576,0.00201508,-0.4364966,0.662780316,neg,ns,0.178630398,-0.0000915,0.0000693,-1.320412229,0.187671455,neg,ns,0.057427381,Gpr137c,Gpr137c_fiveUTR,14,45219745,45219794,45219745,45219746,50,+,CGGGTTTCTCAGCTGATTGTCTCCAGCCGAGAGTTGTTTTTTGCAGCTAC,Promoter (<=1kb),14,45219717,45224713,4997,1,Gpr137c-207,28,Gpr137c-207;Gpr137c-202;Gpr137c-205;Gpr137c-201;Gpr137c-206;Gpr137c-204;Txndc16-205;Txndc16-201;Txndc16-203;Txndc16-207;Txndc16-204;Txndc16-206;Txndc16-209;Txndc16-211;Txndc16-208;Txndc16-202,Gpr137c;Gpr137c;Gpr137c;Gpr137c;Gpr137c;Gpr137c;Txndc16;Txndc16;Txndc16;Txndc16;Txndc16;Txndc16;Txndc16;Txndc16;Txndc16;Txndc16,0;0;0;0;0;0;-320;-351;0;-355;-363;-348;-343;-349;-381;-355,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,6,70713,ENSMUSG00000049092,conserved gene and region,14,45219666,45220343,678,*,678,91,0.743362832,0.97309318,0.134218289,3.65E-82,CpGisland,TRUE,U6,En-Sp
19125,cg24727294,-0.00000668,0.00000545,-1.225929816,0.221155552,loss,ns,0.0000167,0.00000926,1.800746783,0.072714647,pos,ns,0.010584972,0.002712999,3.901575861,0.000117244,pos,ns,3.930909087,-0.000402038,0.0000933,-4.309096195,0.000022,neg,ns,0.863788579,Gm49017,Gm49017_Intergenic_upstream,14,98536589,98536638,98536637,98536638,50,-,TTGATGTATTCATTATCGGCACTCAGTACATTAATTCACGCTGAAGTCCG,Distal Intergenic,14,98519416,98519700,285,2,Gm49017-201,-16938,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,11,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3513,cg23361594,0.0000458,0.00000927,4.942594739,0.00000126,gain,yes,0.0000283,0.0000157,1.80071091,0.072720318,pos,ns,-0.004650648,0.004611963,-1.008388115,0.314054608,neg,ns,0.50299483,0.000414843,0.000158605,2.615575628,0.009343533,pos,ns,0.819749919,Bcl11a,Bcl11a_Intergenic_downstream,11,24282837,24282886,24282885,24282886,50,-,ATGATGATTATCTGCACCAGGGTCTCAAGGGTGCTCAGGCTTTGCTGGCG,Distal Intergenic,11,24142379,24163291,20913,1,Bcl11a-206,140507,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,15,98,14025,ENSMUSG00000000861,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7267,cg26633358,0.0000325,0.00000495,6.564595199,2.19E-10,gain,yes,-0.0000151,0.00000841,-1.800671912,0.072726483,neg,ns,0.003080635,0.002463827,1.250345486,0.212116351,pos,ns,0.673425853,-0.0000914,0.0000847,-1.078427035,0.281681639,neg,ns,0.092933187,Sorl1,Sorl1_Intergenic_downstream,9,41890940,41890989,41890940,41890941,50,+,CGGGACCACGTGCTCTGTTTGCACAGCAGCATGTGGTACCACTGGAGGAA,Distal Intergenic,9,41969739,41974587,4849,2,Sorl1-202,83598,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,6,20660,ENSMUSG00000049313,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
11545,cg08636454,-0.00000116,0.00000735,-0.158194644,0.874406423,loss,ns,0.0000225,0.0000125,1.800522049,0.072750178,pos,ns,0.005740271,0.003657469,1.569465466,0.117559635,pos,ns,0.929741772,-0.000211174,0.00012578,-1.67891334,0.094176556,neg,ns,0.84747492,Gm9276,Gm9276_Intergenic_downstream,19,59098263,59098312,59098311,59098312,50,-,GTGTTCAGACTCCCCAATTATAACTAGTTATTCTTCAAAGAATTTTGCCG,Distal Intergenic,19,59087571,59088954,1384,1,Gm9276-201,10741,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,668626,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14472,cg06310881,-0.0000454,0.0000122,-3.716481074,0.000239625,loss,ns,0.0000374,0.0000208,1.800342451,0.072778582,pos,ns,0.003103082,0.00608562,0.50990394,0.610481589,pos,ns,0.214327429,-0.000406539,0.000209284,-1.942523738,0.05297906,neg,ns,0.719434175,Iqcm,Iqcm_Intron,8,75828762,75828811,75828762,75828763,50,-,CGTTTCTGTTTAGTTCTAATTATAGTTTTTGTATCACAGCCATTATGCTA,"Intron (Iqcm-201/Iqcm, intron 11 of 12)",8,75448694,75984478,535785,1,Iqcm-201,380068,Iqcm-201;Iqcm-203;Iqcm-202,Iqcm;Iqcm;Iqcm,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,71831,ENSMUSG00000031620,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8716,cg08864793,0.00000397,0.00000385,1.030371368,0.30363893,gain,ns,-0.0000118,0.00000655,-1.800284475,0.072787754,neg,ns,-0.003793176,0.001918197,-1.977469548,0.0488741,neg,ns,1.310921228,0.0000999,0.000066,1.514141814,0.131008751,pos,ns,0.922079013,Fbxw4,Fbxw4_Intron,19,45596211,45596260,45596211,45596212,50,+,CGCATTGGCATTTTAATTACTGTTGGGTAAACTAATTTGTACAAATGAAG,"Intron (Fbxw4-206/Fbxw4, intron 1 of 4)",19,45578254,45631138,52885,2,Fbxw4-206,34878,Fbxw4-206;Fbxw4-201;Fbxw4-204;Fbxw4-209;Fbxw4-203;Fbxw4-210;Fbxw4-205;Fbxw4-208,Fbxw4;Fbxw4;Fbxw4;Fbxw4;Fbxw4;Fbxw4;Fbxw4;Fbxw4,0;0;-2712;-2744;-4369;-4369;-3550;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,14,30838,ENSMUSG00000040913,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17923,cg17399895,0.0000399,0.0000283,1.40973902,0.159619205,gain,ns,-0.0000865,0.0000481,-1.800180288,0.072804238,neg,ns,-0.022751048,0.014082948,-1.615503193,0.10721901,neg,ns,0.969728206,0.000811322,0.000484311,1.675206398,0.094902103,pos,ns,0.722873113,Irx6,Irx6_Intergenic_upstream,8,92545589,92545638,92545637,92545638,50,-,CTAACAATCATGATTAAATCATTAAATTCTTGTCTACGCTTCAGAGAGCG,Distal Intergenic,8,92674288,92680956,6669,1,Irx6-201,-128699,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,5,64379,ENSMUSG00000031738,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2841,cg23578982,-0.000011,0.00000531,-2.060998289,0.040136999,loss,ns,0.0000163,0.00000903,1.800145967,0.072809668,pos,ns,0.000047,0.002644825,0.017759075,0.985842478,pos,ns,0.006192473,-0.0000526,0.000091,-0.578587034,0.563287967,neg,ns,0.889132549,Ing3,Ing3_threeUTR,6,21965740,21965789,21965740,21965741,50,+,CGACACTTGAGAAAGCTGGATCAGGAACTGGCTAAGTTTAAAATGGAGCT,3' UTR,6,21949571,21976038,26468,1,Ing3-201,16169,Ing3-201;Ing3-205;Ing3-203;Ing3-202;Ing3-207;Ing3-208;Ing3-206,Ing3;Ing3;Ing3;Ing3;Ing3;Ing3;Ing3,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,2,71777,ENSMUSG00000029670,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2747,cg11707875,0.000116189,0.0000134,8.660528343,2.63E-16,gain,yes,0.000041,0.0000228,1.800046474,0.072825413,pos,ns,0.024044381,0.006677236,3.600948215,0.00036908,pos,ns,3.432878951,-0.000334727,0.00022963,-1.457681259,0.145940694,neg,ns,0.39114919,Klhl14,Klhl14_Promoter,18,21654857,21654906,21654857,21654858,50,+,CGTAAATGACTGCGATTTCAAACATCTTTGGAAGAAAGAAGGGGAAAAAG,Promoter (<=1kb),18,21550379,21654718,104340,2,Klhl14-202,-139,Klhl14-201;Klhl14-202,Klhl14;Klhl14,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,3,38,225266,ENSMUSG00000042514,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
741,cg15282325,-0.00000146,0.00000472,-0.308826346,0.757661069,loss,ns,0.0000144,0.00000801,1.799945369,0.072841416,pos,ns,0.009237746,0.002346965,3.936038782,0.000102318,pos,ns,3.990049108,-0.000351118,0.0000807,-4.350261971,0.0000185,neg,ns,0.877405968,Adarb2,Adarb2_Intron,13,8444519,8444568,8444519,8444520,50,-,CGGACCTAATGAGAAACTGCACATCAGCAGTCTGGTGCCACTTACACATC,"Intron (Adarb2-201/Adarb2, intron 1 of 9)",13,8202866,8761530,558665,1,Adarb2-201,241653,Adarb2-201;Adarb2-203;Adarb2-202,Adarb2;Adarb2;Adarb2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,94191,ENSMUSG00000052551,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16331,cg11538847,-0.0000135,0.0000448,-0.301419366,0.763296816,loss,ns,0.000137055,0.0000762,1.799738951,0.072874097,pos,ns,-0.022575071,0.022310229,-1.011870869,0.312388918,neg,ns,0.505304381,0.001828666,0.000767247,2.383413098,0.017754838,pos,ns,0.732341986,Lrpprc,Lrpprc_Intron,17,84749266,84749315,84749314,84749315,50,-,CTAGTGTATAATGCCGATTTCAAGTTAATTACTACTTGCATTTCTAAACG,"Intron (Lrpprc-201/Lrpprc, intron 22 of 37)",17,84705247,84790558,85312,2,Lrpprc-201,41243,Lrpprc-201;Lrpprc-203;Lrpprc-204,Lrpprc;Lrpprc;Lrpprc,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,15,72416,ENSMUSG00000024120,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4855,cg11370011,0.00000831,0.00000549,1.514282694,0.130973041,gain,ns,-0.0000168,0.00000933,-1.799738723,0.072874133,neg,ns,0.004284942,0.002732358,1.568221287,0.117849642,pos,ns,0.928671734,-0.0000181,0.000094,-0.192389384,0.847563177,neg,ns,0.863202129,Gm13835,Gm13835_Exon,6,31062677,31062726,31062677,31062678,50,-,CGATTTCAGATGGTGCTAGAAAATTATATTGACTCTGAACACCAAAAGAA,"Exon (Mir29a-201/Mir29a-201, exon 1 of 1)",6,31141979,31142663,685,2,Gm13835-201,79986,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,4,100038973,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10870,cg00190744,-0.000000906,0.00000131,-0.691381317,0.489843371,loss,ns,0.00000401,0.00000223,1.799452947,0.072919399,pos,ns,0.000910978,0.000652531,1.396068514,0.163692805,pos,ns,0.785970408,-0.0000126,0.0000224,-0.563313567,0.573628597,neg,ns,0.964372097,B230219D22Rik,B230219D22Rik_Exon,13,55699382,55699431,55699382,55699383,50,+,CGGACCAGCACAGGCAGACCCCTGGGAACCACCAAAGCAGCTGGATTTAA,"Exon (B230219D22Rik-201/B230219D22Rik, exon 2 of 2)",13,55693124,55703500,10377,1,B230219D22Rik-201,6258,B230219D22Rik-201,B230219D22Rik,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,78521,ENSMUSG00000045767,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5759,cg10982616,0.0000329,0.00000715,4.597758991,0.00000623,gain,ns,0.0000219,0.0000121,1.799226552,0.072955275,pos,ns,0.012268513,0.003559502,3.446693779,0.000645834,pos,ns,3.189879189,-0.000222218,0.000122411,-1.815343924,0.070437218,neg,ns,0.170289551,Sox2,Sox2_Intron,3,34659929,34659978,34659929,34659930,50,+,CGATGGGCTGAATGGCAGGGACTCCCTCATCCAGTGCAGGTGCAGTAGAG,"Intron (Sox2ot-203/Sox2ot-203, intron 3 of 3)",3,34650405,34652461,2057,1,Sox2-201,9524,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,34,62,20674,ENSMUSG00000074637,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
3821,cg22566291,-0.00000078,0.00000414,-0.188430202,0.850662717,loss,ns,0.0000126,0.00000703,1.799116906,0.072972655,pos,ns,0.000823772,0.00205921,0.400042622,0.689400638,pos,ns,0.161528319,-0.000108155,0.0000708,-1.527270758,0.127713335,neg,ns,0.906238788,5730522E02Rik,5730522E02Rik_Intergenic_downstream,11,25531209,25531258,25531209,25531210,50,+,CGACACGGCTCCATTCTCTAACTTGCTGTCAGGAAATATAATTTGTGCTC,Distal Intergenic,11,25602816,25620098,17283,2,5730522E02Rik-205,88840,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,21,90,70626,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14293,cg02124022,0.0000104,0.00000469,2.224662368,0.026823599,gain,ns,-0.0000143,0.00000796,-1.798599611,0.0730547,neg,ns,-0.002197768,0.00233271,-0.9421522,0.346848347,neg,ns,0.45986037,0.0000584,0.0000802,0.727716555,0.467336379,pos,ns,0.089655983,Gsx2,Gsx2_Intergenic_downstream,5,75084544,75084593,75084592,75084593,50,-,AATTGACTGAGGGGCAGGTGAAGCTCCCGCCCCATGCAGGCTCATTCACG,Distal Intergenic,5,75075602,75077625,2024,1,Gsx2-202,8991,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,10,14843,ENSMUSG00000035946,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
26590,cg02172466,0.00000631,0.00000709,0.889673786,0.374330953,gain,ns,-0.0000217,0.0000121,-1.798510596,0.073068826,neg,ns,-0.010066165,0.003530939,-2.850846884,0.004652706,neg,ns,2.332294391,0.00014958,0.000121429,1.231832406,0.218945264,pos,ns,0.882023657,Casz1,Casz1_Exon,4,148944450,148944499,148944450,148944451,50,+,CGCCTGGAAGCAGCTGGCTTCCACCATACCCCAGATGCCTCAGATCCCAG,"Exon (Casz1-201/Casz1, exon 16 of 16)",4,148804429,148945129,140701,1,Casz1-201,140021,Casz1-201;Casz1-202;Casz1-204;Casz1-207,Casz1;Casz1;Casz1;Casz1,0;0;0;-2503,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16371,cg22494132,-0.0000275,0.0000177,-1.551104329,0.121896959,loss,ns,-0.0000542,0.0000301,-1.79845363,0.073077867,neg,ns,0.003409133,0.00883103,0.386040229,0.699731677,pos,ns,0.155068465,0.0000788,0.000303698,0.259367665,0.79552373,pos,ns,0.690537878,Nfix,Nfix_Intron,8,84780033,84780082,84780033,84780034,50,-,CGGGAAGTCTCCCTCTATGACCCGATTCAGCACACACAAGAGAAAACTGT,"Intron (Nfix-201/Nfix, intron 1 of 8)",8,84708614,84800140,91527,2,Nfix-201,20058,Nfix-201;Nfix-202;Nfix-205,Nfix;Nfix;Nfix,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,49,18032,ENSMUSG00000001911,conserved gene and region,8,84779926,84780165,240,*,240,13,0.554166667,0.771895101,0.054166667,0.000000544,CpGisland,TRUE,U13,Hc-P
8018,cg26602269,-0.0000108,0.00000982,-1.102141777,0.271254972,loss,ns,0.00003,0.0000167,1.798442859,0.073079576,pos,ns,0.008572552,0.00488519,1.754804149,0.080280694,pos,ns,1.095388882,-0.000286705,0.000168001,-1.706562857,0.088904772,neg,ns,0.512598857,Pax5,Pax5_Exon,4,44691886,44691935,44691934,44691935,50,-,GCCAGCAGCCGGTCCCTGATCTCCCAGGCAAACATGGTGGGATTTTGGCG,"Exon (Pax5-201/Pax5, exon 3 of 10)",4,44524757,44710487,185731,2,Pax5-201,18552,Pax5-201;Pax5-202;Pax5-203;Pax5-204;Pax5-205;Pax5-207;Pax5-206;Pax5-209;Pax5-210;Pax5-212;Pax5-213;Pax5-214;Pax5-215;Pax5-208;Pax5-216;Pax5-217;Pax5-218;Pax5-219,Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,45,18507,ENSMUSG00000014030,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8646,cg10158574,-0.000111309,0.0000221,-5.043895477,0.000000778,loss,yes,-0.0000674,0.0000375,-1.79824224,0.073111425,neg,ns,0.050133862,0.010983518,4.564463157,0.00000723,pos,ns,5.140944021,-0.002011315,0.000377722,-5.324851222,0.000000194,neg,yes,0.779651107,Btrc,Btrc_Intron,19,45476386,45476435,45476434,45476435,50,-,TAAACTCTGACTTGTAATAACGTCGGCAAGAGTCCGCATAAATCTGCCCG,"Intron (Btrc-204/Btrc, intron 1 of 2)",19,45363734,45507736,144003,1,Btrc-204,112652,Btrc-204;Btrc-201;Btrc-210;Btrc-202;Btrc-203;Btrc-209,Btrc;Btrc;Btrc;Btrc;Btrc;Btrc,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,63,98,12234,ENSMUSG00000025217,conserved gene and region,19,45476406,45476490,85,*,85,8,0.623529412,1.011904762,0.094117647,0.00000348,CpGisland,TRUE,NA,NRS
23145,cg10790956,-0.0000122,0.00000259,-4.719125016,0.00000359,loss,ns,0.00000792,0.0000044,1.798128177,0.073129537,pos,ns,0.001886919,0.001290165,1.462541108,0.144606042,pos,ns,0.83981356,-0.000111771,0.0000444,-2.51915034,0.012266562,neg,ns,0.934861314,Rnf220,Rnf220_Intron,4,117349714,117349763,117349762,117349763,50,+,ATTAAACTATCATCGTCAGCCCATAATTTCATGAAGAAGTCAGGGGACCG,"Intron (Rnf220-201/Rnf220, intron 2 of 14)",4,117271463,117497052,225590,2,Rnf220-201,147289,Rnf220-201;Rnf220-202;Rnf220-207,Rnf220;Rnf220;Rnf220,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14074,cg08034440,0.0000534,0.00000719,7.428248991,1.08E-12,gain,yes,-0.000022,0.0000122,-1.798007702,0.073148672,neg,ns,0.002300464,0.003580807,0.642442849,0.521060516,pos,ns,0.283111835,0.0000767,0.000123144,0.622797339,0.53387558,pos,ns,0.139061486,Evx2,Evx2_Intergenic_downstream,2,74651080,74651129,74651128,74651129,50,+,GGGTGGTCCGTTCCACCTTAAATAACTTGGGCTTTTTGGTCCCAAACGCG,Downstream (1-2kb),2,74655616,74659419,3804,2,Evx2-202,8290,Evx2-201;Evx2-202,Evx2;Evx2,0;8290,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,17,35,14029,ENSMUSG00000001815,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
501,cg11570499,-0.0000207,0.00000985,-2.098716363,0.036650649,loss,ns,0.0000301,0.0000167,1.797996856,0.073150395,pos,ns,0.012209293,0.004902748,2.490295808,0.013287099,pos,ns,1.876569828,-0.000506449,0.000168605,-3.003757622,0.002883979,neg,ns,0.818184336,Celf2,Celf2_Exon,2,6606834,6606883,6606834,6606835,50,-,CGCATAATGATCACTTAGCTCCCAGCATGCTTTGGGAGATGCAGCATTGC,"Exon (Celf2-227/Celf2, exon 5 of 7)",2,6539694,7396000,856307,2,Celf2-201,789117,Celf2-201;Celf2-202;Celf2-204;Celf2-214;Celf2-206;Celf2-226;Celf2-223;Celf2-224;Celf2-221;Celf2-205;Celf2-211;Celf2-213;Celf2-225;Celf2-228;Celf2-217;Celf2-227;Celf2-212;Celf2-210,Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,24,14007,ENSMUSG00000002107,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19940,cg03630714,0.000141725,0.0000114,12.45910291,3.67E-29,gain,yes,-0.0000347,0.0000193,-1.797791367,0.073183042,neg,ns,0.0151006,0.005661577,2.667207459,0.008050157,pos,ns,2.094195674,-0.0000129,0.000194701,-0.066220802,0.947244721,neg,ns,0.748073454,Clpb,Clpb_Intron,7,101692252,101692301,101692252,101692253,50,-,CGGTGGAAGGCACTTTGATGTTACAACCTCTCGGTGATGCTTTACTTAGT,"Intron (Clpb-205/Clpb, intron 3 of 5)",7,101663633,101722922,59290,1,Clpb-205,28619,Clpb-205;Clpb-201;Clpb-202;Clpb-206;Clpb-211;Clpb-203;Clpb-208;Clpb-207;Clpb-210,Clpb;Clpb;Clpb;Clpb;Clpb;Clpb;Clpb;Clpb;Clpb,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,21,21,20480,ENSMUSG00000001829,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25182,cg25453217,-0.00000729,0.00000444,-1.641737596,0.101658442,loss,ns,0.0000136,0.00000755,1.797649087,0.073205654,pos,ns,-0.001069433,0.002210748,-0.483742446,0.62891019,neg,ns,0.201411369,0.000108855,0.000076,1.431782113,0.153213632,pos,ns,0.861425838,Tent5b,Tent5b_Exon,4,133486633,133486682,133486681,133486682,50,-,GAGGAGATCCGAGGTGGTGGCCTCCTCAAGTACTGCCACCTCCTGGTGCG,"Exon (Tent5b-201/Tent5b, exon 2 of 2)",4,133480132,133487938,7807,1,Tent5b-201,6501,Tent5b-201;Trnp1-202;Trnp1-201,Tent5b;Trnp1;Trnp1,0;11868;11037,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,100342,ENSMUSG00000046694,conserved gene and region,4,133486289,133486936,648,*,648,43,0.601851852,0.735120304,0.066358025,3.61E-25,CpGisland,TRUE,U11,Tr-P
14559,cg19239878,-0.0000278,0.0000136,-2.035066635,0.042694621,loss,ns,0.0000417,0.0000232,1.797615077,0.07321106,pos,ns,-0.001358263,0.006789253,-0.200060787,0.841564216,neg,ns,0.074912739,0.000215008,0.000233482,0.920877596,0.3578304,pos,ns,0.86051106,Gm50360,Gm50360_Intergenic_downstream,18,76438912,76438961,76438912,76438913,50,-,CGCTGCAGTCTATAAAAAGAGGAGATTTTGCAAATTGTTTCTCACCTTGT,Distal Intergenic,18,76321824,76322259,436,1,Gm50360-201,117137,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,10,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17659,cg08070771,0.000127044,0.000011,11.52274164,8.26E-26,gain,yes,-0.0000337,0.0000187,-1.797515156,0.073226944,neg,ns,0.01636507,0.005487523,2.982232427,0.00308852,pos,ns,2.51024958,-0.000389673,0.000188715,-2.064871532,0.039766423,neg,ns,0.039470206,Zic4,Zic4_Intron,9,91367407,91367456,91367455,91367456,50,+,GATTCAGTGCAAACATACAACACTCGCTTGTTTTCGCGATGCGGCCCTCG,"Intron (Zic4-208/Zic4, intron 1 of 2)",9,91362413,91378915,16503,1,Zic4-208,4994,Zic1-201;Zic1-202;Zic1-203;Zic4-208;Zic4-206;Zic4-207;Zic4-211;Zic4-204;Zic4-203;Zic4-210;Zic4-209;Zic4-212,Zic1;Zic1;Zic1;Zic4;Zic4;Zic4;Zic4;Zic4;Zic4;Zic4;Zic4;Zic4,0;0;-4353;0;0;0;0;0;0;-3548;0;-3894,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,55,22774,ENSMUSG00000036972,mapped to different genes,9,91367412,91367502,91,*,91,9,0.516483517,1.568965517,0.098901099,0.000000407,CpGisland,TRUE,U13,Hc-P
23456,cg03808378,0.0000721,0.00000858,8.395242168,1.68E-15,gain,yes,-0.0000262,0.0000146,-1.797478936,0.073232703,neg,ns,-0.013295679,0.004271985,-3.112295422,0.002029349,neg,ns,2.692643324,0.000491013,0.000146913,3.342199584,0.000932949,pos,ns,0.624386036,Gm9267,Gm9267_Intergenic_upstream,12,118500580,118500629,118500628,118500629,50,+,CAGGGACTCTTGCCACTTTTGACAGATAGTCACTACCAAGATGAATGGCG,Distal Intergenic,12,118602677,118603080,404,1,Gm9267-201,-102048,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,20,668611,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6005,cg12642288,0.000000321,0.00000143,0.224385396,0.822605252,gain,ns,0.00000436,0.00000243,1.797453273,0.073236783,pos,ns,0.002263048,0.00071141,3.181073738,0.001615873,pos,ns,2.791592834,-0.0000633,0.0000245,-2.586172358,0.010160642,neg,ns,0.967789663,Atp11b,Atp11b_Exon,3,35841020,35841069,35841068,35841069,50,+,CCACTTATAGATGTACTCCAACACAGTTGCTTTAAGTGACGAGTTCATCG,"Exon (Atp11b-207/Atp11b, exon 23 of 25)",3,35754134,35856271,102138,1,Atp11b-203,86886,Atp11b-203;Atp11b-201;Atp11b-207;Atp11b-202;Atp11b-211;Atp11b-206,Atp11b;Atp11b;Atp11b;Atp11b;Atp11b;Atp11b,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,76295,ENSMUSG00000037400,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12526,cg17355105,0.0000116,0.00000459,2.532884117,0.011805801,gain,ns,-0.000014,0.00000779,-1.797362199,0.073251265,neg,ns,-0.006749175,0.002282008,-2.957559385,0.003339272,neg,ns,2.476348205,-0.00000634,0.0000785,-0.080770684,0.935676442,neg,ns,0.876237397,Gm18839,Gm18839_Intergenic_downstream,6,64864746,64864795,64864746,64864747,50,-,CGTGGGATGGCAAAGTCATCTTCATTAGACGGAATTTAATAGTGAATCAA,Distal Intergenic,6,64878459,64879128,670,2,Gm18839-201,14382,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,100417806,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11573,cg06040819,-0.0000104,0.00000162,-6.406082254,5.54E-10,loss,yes,0.00000494,0.00000275,1.797321354,0.073257761,pos,ns,0.00168506,0.000806041,2.090537616,0.037383782,pos,ns,1.427316766,-0.0000354,0.0000277,-1.277246256,0.202471097,neg,ns,0.084515183,Fbxo33,Fbxo33_fiveUTR,12,59219456,59219505,59219456,59219457,50,+,CGGCACTGACAAGAACAACAACATCAATGACTAGGAAGAAGGGGGCGGAA,Promoter (<=1kb),12,59200655,59219725,19071,2,Fbxo33-201,220,Fbxo33-201;Fbxo33-203,Fbxo33;Fbxo33,0;-655,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,11,70611,ENSMUSG00000035329,conserved gene but different region,12,59218669,59219457,789,*,789,92,0.70468948,0.946289826,0.116603295,1.43E-76,CpGisland,TRUE,U1,Pr-A
7918,cg23452206,0.0000101,0.0000028,3.607880624,0.000359749,gain,ns,-0.00000854,0.00000475,-1.797057507,0.073299733,neg,ns,-0.000928096,0.001391583,-0.666935879,0.505309189,neg,ns,0.296442804,-0.00000122,0.0000479,-0.025558879,0.97962563,neg,ns,0.904524357,Gtdc1,Gtdc1_Intron,2,44632744,44632793,44632792,44632793,50,+,TGATGTCCCCACAAGAGTTTTTTGCCCGAAGGCTTTACCAATGCTCGGCG,"Intron (Gtdc1-203/Gtdc1, intron 6 of 10)",2,44564412,44861622,297211,2,Gtdc1-203,228829,Gtdc1-203;Gtdc1-201;Gtdc1-205;Gtdc1-210;Gtdc1-204;Gtdc1-211,Gtdc1;Gtdc1;Gtdc1;Gtdc1;Gtdc1;Gtdc1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,43,227835,ENSMUSG00000036890,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4546,cg02452410,0.0000104,0.00000269,3.877775645,0.000128733,gain,ns,-0.00000821,0.00000457,-1.796980006,0.073312065,neg,ns,-0.000270712,0.001338333,-0.202275661,0.839833908,neg,ns,0.075806595,0.0000376,0.000046,0.817916658,0.414032997,pos,ns,0.900166798,Ntm,Ntm_Intron,9,29578502,29578551,29578550,29578551,50,+,CCCACCCAGCACTTTTTAACAATGCGCCATGCTGATGAACCAGCATATCG,"Intron (Ntm-201/Ntm, intron 1 of 7)",9,28994750,29963129,968380,2,Ntm-201,384578,Ntm-201;Ntm-204;Ntm-210;Ntm-207,Ntm;Ntm;Ntm;Ntm,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,27,32,235106,ENSMUSG00000059974,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24615,cg24912303,0.00000298,0.0000187,0.159244957,0.873579584,gain,ns,-0.0000571,0.0000318,-1.796888106,0.073326691,neg,ns,0.024492917,0.009305958,2.631960741,0.008914216,pos,ns,2.049916832,-0.000779845,0.000320031,-2.436779098,0.015381157,neg,ns,0.682891179,Kif5a,Kif5a_Exon,10,127231435,127231484,127231483,127231484,50,-,CTCTCAGCCGTAGCCCTAAGTCGTTTTTCCAATTTAGGAAGCTCACAACG,"Exon (Kif5a-201/Kif5a, exon 24 of 29)",10,127225696,127263348,37653,2,Kif5a-201,31864,Kif5a-201;Kif5a-202,Kif5a;Kif5a,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,8,16572,ENSMUSG00000074657,conserved gene and region,10,127231443,127231578,136,*,136,10,0.551470588,0.967283073,0.073529412,0.00000115,CpGisland,TRUE,NA,NRS
18723,cg27270454,-0.0000104,0.00000521,-1.998365454,0.046550181,loss,ns,-0.0000159,0.00000885,-1.796858232,0.073331446,neg,ns,-0.003811043,0.002592837,-1.469835175,0.142620551,neg,ns,0.845817891,-0.00016273,0.0000892,-1.824992157,0.068964435,neg,ns,0.877582936,Cdk5rap3,Cdk5rap3_Intergenic_downstream,11,96907139,96907188,96907187,96907188,50,-,GGTGTCACTCCACTTTTCATTTTGATGGAAAGTCATTACGGGAGTCAACG,Distal Intergenic,11,96907816,96908758,943,2,Cdk5rap3-210,1619,Cdk5rap3-201;Cdk5rap3-205;Cdk5rap3-210;Cdk5rap3-208;Cdk5rap3-202;Cdk5rap3-211;Cdk5rap3-209,Cdk5rap3;Cdk5rap3;Cdk5rap3;Cdk5rap3;Cdk5rap3;Cdk5rap3;Cdk5rap3,9308;9308;1570;5681;9204;8919;9241,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,5,80280,ENSMUSG00000018669,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6215,cg04868151,-0.00000147,0.00000127,-1.154784927,0.249067886,loss,ns,0.00000388,0.00000216,1.796661274,0.073362801,pos,ns,0.00072768,0.000633181,1.149244456,0.251341098,pos,ns,0.599736492,-0.00000315,0.0000218,-0.144657518,0.885075283,neg,ns,0.030946696,Pcgf5,Pcgf5_Exon,19,36348217,36348266,36348265,36348266,50,+,TGTGCCCCAGTTTGTGTCCAATCAGGGAGTGCGGGCTGTGCCCCGAGCCG,Promoter (<=1kb),19,36348309,36460970,112662,1,Pcgf5-211,-43,Pcgf5-211;Pcgf5-205,Pcgf5;Pcgf5,0;-271,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,76073,ENSMUSG00000024805,conserved gene but different region,19,36348072,36349309,1238,*,1238,161,0.739095315,0.954588123,0.130048465,2.72E-142,CpGisland,TRUE,U2,Pr-W
17794,cg05129035,-0.00000409,0.00000116,-3.540320655,0.000460945,loss,ns,0.00000353,0.00000196,1.796600052,0.07337255,pos,ns,0.00056524,0.000575623,0.981962097,0.326884258,pos,ns,0.485605994,0.00000556,0.0000198,0.280778442,0.779067637,pos,ns,0.037033171,Slc6a6,Slc6a6_fiveUTR,6,91684086,91684135,91684134,91684135,50,+,CAGCAGGATGGGTGATGCTGAGAGCTGCCTGCTCAGACAACAGACACGCG,Promoter (<=1kb),6,91684095,91726931,42837,1,Slc6a6-210,0,Slc6a6-201;Slc6a6-202;Slc6a6-210;Slc6a6-204;Slc6a6-209;Slc6a6-208,Slc6a6;Slc6a6;Slc6a6;Slc6a6;Slc6a6;Slc6a6,0;0;0;0;0;-14,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,2,21366,ENSMUSG00000030096,conserved gene and region,6,91684103,91684399,297,*,297,35,0.727272727,0.916666667,0.117845118,1.26E-29,CpGisland,TRUE,U1,Pr-A
9868,cg06490500,0.000150416,0.000021,7.170766758,5.50E-12,gain,yes,-0.000064,0.0000356,-1.796349066,0.073412527,neg,ns,0.040656966,0.010440078,3.894316096,0.000120641,pos,ns,3.918504407,-0.000743688,0.000359033,-2.071360919,0.039152085,neg,ns,0.333088765,Clk4,Clk4_Exon,11,51273022,51273071,51273070,51273071,50,-,CACTCTGATATATTGATTGGCTGGACGATCTTGGTGCTGCCCACTTGCCG,"Exon (Clk4-213/Clk4, exon 1 of 3)",11,51261730,51273626,11897,1,Clk4-205,11292,Clk4-214;Clk4-205;Clk4-201;Clk4-204;Clk4-207;Clk4-212;Clk4-210;Clk4-203;Clk4-213;Clk4-202;Clk4-208;Clk4-211,Clk4;Clk4;Clk4;Clk4;Clk4;Clk4;Clk4;Clk4;Clk4;Clk4;Clk4;Clk4,11292;0;0;0;9858;0;9848;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,7,12750,ENSMUSG00000020385,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14237,cg09775837,0.0000217,0.0000178,1.219753666,0.223485437,gain,ns,-0.0000544,0.0000303,-1.796334925,0.07341478,neg,ns,-0.017874165,0.008866901,-2.015829997,0.044680231,neg,ns,1.349884592,0.000376718,0.000304932,1.235418041,0.217610391,pos,ns,0.848059401,Sgsm2,Sgsm2_Exon,11,74863564,74863613,74863612,74863613,50,-,CATCGGATTGGGAGCTGTGAGGTTCCGCGAGCAGATCATTGAGAGCATCG,"Exon (Sgsm2-202/Sgsm2, exon 12 of 24)",11,74849261,74897060,47800,2,Sgsm2-201,33447,Sgsm2-201;Sgsm2-202;Sgsm2-203;Sgsm2-205;Sgsm2-204,Sgsm2;Sgsm2;Sgsm2;Sgsm2;Sgsm2,0;0;-2989;5479;4775,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,97761,ENSMUSG00000038351,conserved gene and region,11,74863567,74863670,104,*,104,10,0.596153846,1.082206035,0.096153846,0.000000092,CpGisland,TRUE,U11,Tr-P
14916,cg08562967,-0.00000383,0.00000359,-1.068573544,0.286093251,loss,ns,0.0000109,0.00000609,1.796270289,0.073425078,pos,ns,0.002512626,0.00178433,1.408161858,0.160085205,pos,ns,0.795648802,-0.000114904,0.0000614,-1.872534902,0.062073799,neg,ns,0.942941744,Fam222b,Fam222b_Exon,11,78154539,78154588,78154539,78154540,50,-,CGGGTGTCGACCCACAGCGTCCCCACACCAATGCCTTCATGTGTGGTCAA,"Exon (Fam222b-201/Fam222b, exon 3 of 3)",11,78094660,78156700,62041,1,Fam222b-201,59879,Fam222b-201;Fam222b-202;Fam222b-203;Traf4-203;Traf4-201,Fam222b;Fam222b;Fam222b;Traf4;Traf4,0;0;0;11001;11001,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,21,216971,ENSMUSG00000037750,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16233,cg03182693,0.0000215,0.00000913,2.350291872,0.019385261,gain,ns,-0.0000279,0.0000155,-1.796154097,0.073443594,neg,ns,0.016108809,0.004543334,3.545591975,0.000452177,pos,ns,3.344691127,-0.000624034,0.000156245,-3.993949564,0.0000812,neg,ns,0.68489928,Ctnnd1,Ctnnd1_fiveUTR,2,84624410,84624459,84624458,84624459,50,+,GTTCCTTCACAGAGGCCAAGATGCTGGCGGTCGACTCCACCTCTGAGTCG,5' UTR,2,84600071,84650745,50675,2,Ctnnd1-204,26286,Ctnnd1-204;Ctnnd1-206;Ctnnd1-207;Ctnnd1-208;Ctnnd1-209;Ctnnd1-216;Ctnnd1-220;Ctnnd1-221;Ctnnd1-222;Ctnnd1-224;Ctnnd1-203;Ctnnd1-211;Ctnnd1-212;Ctnnd1-213;Ctnnd1-214;Ctnnd1-215;Ctnnd1-218;Ctnnd1-219;Ctnnd1-210;Ctnnd1-205;Ctnnd1-223;Ctnnd1-201;Ctnnd1-202;Ctnnd1-228;Ctnnd1-217;Ctnnd1-225;Ctnnd1-229;Gm28635-201,Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Gm28635,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,4,12388,ENSMUSG00000034101,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27226,cg13287376,-0.00000232,0.000000921,-2.51339688,0.012464299,loss,ns,0.00000281,0.00000156,1.795875322,0.073488034,pos,ns,0.000817413,0.000458436,1.783046152,0.075557164,pos,ns,1.121724354,-0.0000382,0.0000158,-2.423283178,0.0159533,neg,ns,0.974888091,Chd6,Chd6_Exon,2,161008524,161008573,161008524,161008525,50,+,CGCCCATCAATTCGCTCATAGGTGTATCTGAGGGGACCCAAATGAACGAA,"Exon (Chd6-201/Chd6, exon 17 of 37)",2,160946978,161109022,162045,2,Chd6-201,100449,Chd6-201;Chd6-204;Chd6-209;Chd6-207,Chd6;Chd6;Chd6;Chd6,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,8,71389,ENSMUSG00000057133,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15644,cg13027218,0.0000742,0.0000137,5.418981662,0.000000121,gain,yes,-0.0000418,0.0000233,-1.795846694,0.073492598,neg,ns,0.016140293,0.006816522,2.367819609,0.018506764,pos,ns,1.732669513,-0.000473996,0.00023442,-2.021998467,0.044035162,neg,ns,0.339535644,Nfib,Nfib_Exon,4,82498446,82498495,82498494,82498495,50,+,GATTCTCCTAATCTTACCCTTCTGGTCGGGATTGGATAAGACACAGCACG,"Exon (Nfib-201/Nfib, exon 2 of 12)",4,82290173,82505308,215136,2,Nfib-201,6813,Nfib-201;Nfib-203;Nfib-202;Nfib-205;Nfib-206;Nfib-204;Nfib-207;Nfib-209;Nfib-210;Nfib-208;Nfib-212;Nfib-211,Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,14,66,18028,ENSMUSG00000008575,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8527,cg21790415,0.0000206,0.00000297,6.930746746,2.43E-11,gain,yes,-0.00000906,0.00000504,-1.795794279,0.073500957,neg,ns,-0.002927068,0.001477539,-1.981042367,0.048469952,neg,ns,1.31452741,0.000112182,0.0000508,2.207773947,0.027992024,pos,ns,0.06571564,Btrc,Btrc_Intron,19,45302255,45302304,45302303,45302304,50,+,GATTTATTCCGCTGCCAAGCCTGCAGAAAATTGACTTGTTCATGGAGGCG,"Intron (Gm28578-211/Gm28578-211, intron 1 of 1)",19,45363734,45507736,144003,1,Btrc-204,-61430,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,63,98,12234,ENSMUSG00000025217,mapped to different genes,19,45301752,45302408,657,*,657,54,0.611872146,0.882427559,0.082191781,2.09E-36,CpGisland,TRUE,U3,Pr-B
26523,cg20141509,-0.00000169,0.00000157,-1.077960504,0.281889462,loss,ns,0.00000479,0.00000267,1.795677631,0.073519561,pos,ns,0.002483588,0.000780913,3.180364925,0.001619704,pos,ns,2.790564286,-0.0000576,0.0000269,-2.145592692,0.03268191,neg,ns,0.959738556,Casz1,Casz1_Intron,4,148876428,148876477,148876476,148876477,50,-,CAGAATGTCACAAATAAATCCTCTCCTGCATTTGCATATTAATTGGATCG,"Intron (Casz1-201/Casz1, intron 2 of 15)",4,148804429,148945129,140701,1,Casz1-201,71999,Casz1-201;Casz1-202,Casz1;Casz1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,94,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11933,cg10583229,-0.000000857,0.00000256,-0.334384467,0.738315571,loss,ns,0.00000782,0.00000436,1.795292648,0.073580989,pos,ns,0.003813764,0.001276151,2.988489299,0.003027735,pos,ns,2.518882139,-0.000115709,0.0000439,-2.63654772,0.008797245,neg,ns,0.938799808,Gm18154,Gm18154_Intron,15,61692934,61692983,61692982,61692983,50,+,GCACAAATATGTACAATTACTTGATAGACTGTTTTGGTTCCTATCTTTCG,"Intron (D030024E09Rik-201/D030024E09Rik-201, intron 4 of 4)",15,61826247,61826835,589,1,Gm18154-201,-133264,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,100416535,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2503,cg15053656,-0.00000576,0.0000021,-2.745932326,0.006386356,loss,ns,0.0000064,0.00000357,1.795292302,0.073581044,pos,ns,0.000583303,0.001044446,0.558481298,0.576918925,pos,ns,0.238885214,-0.0000738,0.0000359,-2.053970112,0.040816943,neg,ns,0.947434665,Pkhd1,Pkhd1_Intron,1,20106600,20106649,20106600,20106601,50,-,CGTAGGTGGTACTGTTTTTTACGATATGTTATAATAGTGCAATAAATCTG,"Intron (Pkhd1-201/Pkhd1, intron 61 of 66)",1,20057779,20618064,560286,2,Pkhd1-201,511415,Pkhd1-201,Pkhd1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,25,241035,ENSMUSG00000043760,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23531,cg13087184,0.0000472,0.0000076,6.216537773,1.64E-09,gain,yes,0.0000232,0.0000129,1.795230421,0.073590922,pos,ns,0.007301587,0.003782488,1.930366021,0.054473439,pos,ns,1.263815203,0.000109776,0.000130079,0.843918107,0.399365917,pos,ns,0.139755332,Sp8,Sp8_Promoter,12,118840546,118840595,118840594,118840595,50,+,TATAAAGAAACACCAGGTCTCGCTTTCCATTCTTCTTACAAAATTATTCG,Promoter (5-6kb),12,118846329,118852576,6248,1,Sp8-201,-5734,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,27,29,320145,ENSMUSG00000048562,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
19773,cg16556254,0.00000655,0.00000447,1.465820587,0.143710729,gain,ns,0.0000136,0.00000759,1.79500687,0.073626615,pos,ns,0.00317482,0.002224947,1.426919114,0.154609622,pos,ns,0.810763483,0.0000163,0.0000765,0.213555839,0.831033823,pos,ns,0.898155304,Atp6v0a1,Atp6v0a1_Exon,11,101048458,101048507,101048458,101048459,50,+,CGACAGAGGAGGATGCTGAGATTATTCAGCATGACCAGCTCTCCACCCAC,"Exon (Atp6v0a1-203/Atp6v0a1, exon 18 of 21)",11,101009452,101062424,52973,1,Atp6v0a1-203,39006,Atp6v0a1-209;Atp6v0a1-203;Atp6v0a1-201;Atp6v0a1-210;Atp6v0a1-202;Atp6v0a1-207;Atp6v0a1-204,Atp6v0a1;Atp6v0a1;Atp6v0a1;Atp6v0a1;Atp6v0a1;Atp6v0a1;Atp6v0a1,39006;0;0;0;0;0;4643,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,11975,ENSMUSG00000019302,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6774,cg13791425,-0.00000497,0.00000486,-1.022982465,0.30711376,loss,ns,0.0000148,0.00000825,1.794810424,0.073657993,pos,ns,0.004694171,0.002417487,1.94175678,0.053072304,pos,ns,1.275132059,-0.0000629,0.0000831,-0.756934136,0.449664226,neg,ns,0.893838576,Lhx2,Lhx2_Intergenic_downstream,2,38403270,38403319,38403318,38403319,50,+,TTCCAAACAATTTATACATTTAGAATCCTAAGTTTTCAAAACTCAGCCCG,Distal Intergenic,2,38353802,38360089,6288,1,Lhx2-206,49468,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,33,16870,ENSMUSG00000000247,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23287,cg02042041,-0.000000281,0.00000101,-0.278806692,0.780579073,loss,ns,0.00000307,0.00000171,1.794790456,0.073661183,pos,ns,0.00136502,0.000501826,2.720108929,0.006894258,pos,ns,2.161512441,0.00000364,0.0000173,0.210954934,0.83306104,pos,ns,0.972159777,Eri3,Eri3_Intron,4,117647488,117647537,117647536,117647537,50,-,CGTTTAATCCGGCCTTTGTAAGTGATTTTAAAGTACTTGAAAGGCAGCCG,"Intron (Eri3-201/Eri3, intron 7 of 8)",4,117550365,117674297,123933,1,Eri3-201,97123,Eri3-201;Eri3-206;Eri3-203,Eri3;Eri3;Eri3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,82,97,140546,ENSMUSG00000033423,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22771,cg24601458,0.0000363,0.0000117,3.094725425,0.002149598,gain,ns,0.0000357,0.0000199,1.79473531,0.073669993,pos,ns,0.004657918,0.00583228,0.798644307,0.425108113,pos,ns,0.371500606,0.00017162,0.000200572,0.855652966,0.392850617,pos,ns,0.484631275,Dmbx1,Dmbx1_Intron,4,115932106,115932155,115932154,115932155,50,-,TGGCTTTAATTTTCCAAATCTGCAAATGCATCCGTTATGTCCCCGCATCG,"Intron (Dmbx1-203/Dmbx1, intron 1 of 4)",4,115915119,115939926,24808,2,Dmbx1-203,7771,Dmbx1-203;Dmbx1-202,Dmbx1;Dmbx1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,42,140477,ENSMUSG00000028707,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
18034,cg15544311,0.00000686,0.00000338,2.02932262,0.043279514,gain,ns,0.0000103,0.00000574,1.794167096,0.073760825,pos,ns,0.003229561,0.001681306,1.920864334,0.055665806,pos,ns,1.254411498,-0.000160767,0.0000578,-2.780481084,0.005759772,neg,ns,0.939791376,Pola1,Pola1_Intron,X,93377410,93377459,93377410,93377411,50,+,CGATTAAGTTATTTGTTTAGTTTTTTAGATTCAGCAGTAATTGCTGGTAC,"Intron (Pola1-201/Pola1, intron 35 of 36)",20,93304767,93632155,327389,2,Pola1-201,254696,Pola1-201,Pola1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,59,62,18968,ENSMUSG00000006678,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3033,cg03199289,-0.0000138,0.00000971,-1.420037944,0.156601517,loss,ns,-0.0000296,0.0000165,-1.793910713,0.073801839,neg,ns,-0.003724783,0.004833356,-0.770641096,0.441506617,neg,ns,0.355062783,0.000089,0.000166219,0.535520448,0.592673995,pos,ns,0.059201533,Trpm3,Trpm3_fiveUTR,19,22448245,22448294,22448293,22448294,50,-,GCCCTAATGGAATTTGCAGGTGTGGAGATGACCATGGGATGCCAGAGCCG,5' UTR,19,22139046,22995410,856365,1,Trpm3-218,309199,Trpm3-218;Trpm3-202;Trpm3-203;Trpm3-213;Trpm3-222;Trpm3-207;Trpm3-209;Trpm3-214;Trpm3-216;Trpm3-223;Trpm3-224;Trpm3-201,Trpm3;Trpm3;Trpm3;Trpm3;Trpm3;Trpm3;Trpm3;Trpm3;Trpm3;Trpm3;Trpm3;Trpm3,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,12,226025,ENSMUSG00000052387,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18079,cg25243958,-0.0000548,0.0000188,-2.911303478,0.003860175,loss,ns,0.0000573,0.000032,1.793699202,0.073835689,pos,ns,-0.018555646,0.009360655,-1.982302081,0.048328131,neg,ns,1.315800004,0.000413272,0.000321912,1.283804621,0.200169058,pos,ns,0.507160095,Gm8285,Gm8285_Intergenic_upstream,7,93582729,93582778,93582777,93582778,50,+,ACAGTGCAGCTGTCTACACATATGGTTCATTACCCTTAAGACAGAAAACG,Distal Intergenic,7,93564937,93565695,759,2,Gm8285-201,-17034,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,666783,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1410,cg27700163,0.0000183,0.00000944,1.935354987,0.053855994,gain,ns,0.0000288,0.000016,1.793654506,0.073842844,pos,ns,0.003239474,0.004699381,0.689340488,0.491124669,pos,ns,0.308808251,0.000220482,0.000161611,1.364270686,0.173471986,pos,ns,0.589058297,Rpl36-ps3,Rpl36-ps3_Intergenic_upstream,12,12725112,12725161,12725160,12725161,50,-,TTCCCCTAATTGTTCAGGATTTAGACTGACTGTTTGCACTGCAGACTGCG,Distal Intergenic,12,12912022,12912336,315,1,Rpl36-ps3-201,-186910,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,19,20,100043215,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11946,cg18377384,-0.00000143,0.00000154,-0.928984398,0.353619957,loss,ns,0.00000468,0.00000261,1.793484014,0.073870141,pos,ns,0.002134908,0.000764326,2.793188235,0.005543699,pos,ns,2.256200319,-0.0000693,0.0000263,-2.637253187,0.008779377,neg,ns,0.967035418,Psmd14,Psmd14_Intron,2,61773957,61774006,61773957,61773958,50,-,CGCATAGACCAAAGGTGCTATTAAAGACTGAGTGTATGAAATAGGCAGCA,"Intron (Psmd14-201/Psmd14, intron 7 of 11)",2,61711694,61800376,88683,1,Psmd14-201,62263,Psmd14-201;Psmd14-208;Psmd14-202,Psmd14;Psmd14;Psmd14,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,9,59029,ENSMUSG00000026914,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26285,cg27330882,-0.00000717,0.00000278,-2.583190559,0.010246976,loss,ns,-0.00000846,0.00000472,-1.793476454,0.073871352,neg,ns,0.002314668,0.001382337,1.674460413,0.095048655,pos,ns,1.022054026,-0.0000669,0.0000475,-1.407810682,0.160189107,neg,ns,0.92722473,Ralgapa2,Ralgapa2_Intron,2,146279616,146279665,146279664,146279665,50,+,GCCATACTGTGCAATCACGCTGTTTATTCCACTGTAACAATCAGACAGCG,"Intron (Ralgapa2-202/Ralgapa2, intron 38 of 40)",2,146239879,146512004,272126,2,Ralgapa2-202,232339,Ralgapa2-202;Ralgapa2-211;Ralgapa2-210;Ralgapa2-205;Ralgapa2-208,Ralgapa2;Ralgapa2;Ralgapa2;Ralgapa2;Ralgapa2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,26,241694,ENSMUSG00000037110,conserved gene and region,2,146279575,146279804,230,*,230,14,0.595652174,0.706140351,0.060869565,4.11E-08,CpGisland,TRUE,U11,Tr-P
13385,cg16861303,0.000253683,0.0000105,24.21871848,1.82E-73,gain,yes,-0.0000319,0.0000178,-1.793396054,0.073884227,neg,ns,0.004642861,0.005213341,0.890573056,0.373848899,pos,ns,0.427303894,-0.0000442,0.000179286,-0.246434953,0.805508652,neg,ns,0.331939419,Nr2f2,Nr2f2_Exon,7,70357754,70357803,70357802,70357803,50,-,CCTTCCTACCTGAGGTGAACAGGACTATGGCCTTGAGGCAGCTGTACTCG,"Exon (Nr2f2-201/Nr2f2, exon 2 of 3)",7,70351944,70360593,8650,2,Nr2f2-201,2790,Nr2f2-201;Nr2f2-203;Nr2f2-202;Nr2f2-205;Nr2f2-204;Nr2f2-206,Nr2f2;Nr2f2;Nr2f2;Nr2f2;Nr2f2;Nr2f2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,24,69,11819,ENSMUSG00000030551,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13596,cg12531730,-0.0000104,0.00000554,-1.877473314,0.061392066,loss,ns,0.0000169,0.00000941,1.792678824,0.073999169,pos,ns,0.005470612,0.002755568,1.985293506,0.047992752,pos,ns,1.318824344,-0.000127913,0.0000948,-1.349807413,0.178062571,neg,ns,0.627657469,Metap1d,Metap1d_Intron,2,71517876,71517925,71517924,71517925,50,+,CATTCAAGTGGCGGCTGGGTGCTGACCTTTGTTCCCTTTTTTTGTGTACG,"Intron (Metap1d-201/Metap1d, intron 6 of 9)",2,71453276,71525191,71916,1,Metap1d-201,64600,Metap1d-201;Metap1d-202;Metap1d-205;Metap1d-203;Metap1d-204;Metap1d-206,Metap1d;Metap1d;Metap1d;Metap1d;Metap1d;Metap1d,0;0;0;0;0;2464,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,5,66559,ENSMUSG00000041921,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15648,cg21818900,-0.0000991,0.0000147,-6.732787083,8.07E-11,loss,yes,-0.0000448,0.000025,-1.792423197,0.074040171,neg,ns,0.038536123,0.007325122,5.260816207,0.000000268,pos,ns,6.571797446,-0.00111314,0.00025191,-4.418795092,0.0000137,neg,ns,0.80319372,Nfib,Nfib_Exon,4,82498642,82498691,82498690,82498691,50,+,TCATCCTTTGACATTCGCTTCTCATGCTTTTTAAAGTACTTGCGTTTTCG,"Exon (Nfib-201/Nfib, exon 2 of 12)",4,82290173,82505308,215136,2,Nfib-201,6617,Nfib-201;Nfib-203;Nfib-202;Nfib-205;Nfib-206;Nfib-204;Nfib-207;Nfib-209;Nfib-210;Nfib-208;Nfib-212;Nfib-211,Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,14,66,18028,ENSMUSG00000008575,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1370,cg12910788,-0.0000507,0.0000133,-3.798087494,0.000175452,loss,ns,-0.0000406,0.0000227,-1.792065006,0.074097655,neg,ns,-0.014089613,0.006638673,-2.122353704,0.034600636,neg,ns,1.460915913,-0.000149204,0.000228303,-0.653534572,0.513896155,neg,ns,0.842427697,Cadps,Cadps_threeUTR,14,12449765,12449814,12449813,12449814,50,+,TTGGCATCAACCATAACATTAAACATGGTGCATATTGACTGTGGGACTCG,3' UTR,14,12372563,12823053,450491,2,Cadps-210,373239,Cadps-210;Cadps-202;Cadps-203;Cadps-204;Cadps-201;Cadps-208;Cadps-206,Cadps;Cadps;Cadps;Cadps;Cadps;Cadps;Cadps,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,8,34,27062,ENSMUSG00000054423,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16109,cg07837584,0.00000367,0.00000459,0.799819359,0.424427916,gain,ns,-0.000014,0.0000078,-1.792003751,0.074107489,neg,ns,0.006080851,0.002283781,2.662623995,0.008158085,pos,ns,2.088411781,-0.000154122,0.0000785,-1.962364105,0.050614338,neg,ns,0.905395981,Zfp407,Zfp407_Intron,18,84415092,84415141,84415140,84415141,50,-,GACTGTCAGAAAATGATGACACCATGTTTTACAGTTTAAATAGAATTACG,"Intron (Zfp407-201/Zfp407, intron 2 of 2)",18,84128027,84558425,430399,2,Zfp407-201,143284,Zfp407-201;Zfp407-202;Zfp407-203,Zfp407;Zfp407;Zfp407,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,32,240476,ENSMUSG00000048410,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3531,cg01376699,0.0000125,0.00000368,3.381533633,0.000813191,gain,ns,-0.0000112,0.00000626,-1.791956125,0.074115136,neg,ns,-0.003289828,0.001833283,-1.794501082,0.073707425,neg,ns,1.132488763,0.000123435,0.000063,1.957839899,0.051145597,pos,ns,0.902388593,Cdk5,Cdk5_Exon,5,24420508,24420557,24420508,24420509,50,+,CGGCTGACCACATGTCGATGGACGTGGAGTACAGCTTGGCCCCAAAGAGG,"Exon (Cdk5-201/Cdk5, exon 8 of 12)",5,24418241,24423530,5290,2,Cdk5-201,2973,Asic3-201;Asic3-204;Asic3-202;Asic3-203;Asic3-205;Cdk5-201;Cdk5-203;Cdk5-202;Slc4a2-212;Slc4a2-204;Slc4a2-209;Slc4a2-201;Slc4a2-210;Slc4a2-207,Asic3;Asic3;Asic3;Asic3;Asic3;Cdk5;Cdk5;Cdk5;Slc4a2;Slc4a2;Slc4a2;Slc4a2;Slc4a2;Slc4a2,7116;7057;6796;4768;3931;0;0;2138;-3280;-3296;-3302;-4675;-4719;-4728,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,12568,ENSMUSG00000028969,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9470,cg19494459,-0.00000291,0.00000169,-1.728050797,0.084974944,loss,ns,-0.00000513,0.00000286,-1.791569276,0.074177272,neg,ns,-0.001885637,0.000838676,-2.248349536,0.025256216,neg,ns,1.597631709,0.0000259,0.0000288,0.899536654,0.369065086,pos,ns,0.044431455,Acvr2a,Acvr2a_fiveUTR,2,48814687,48814736,48814735,48814736,50,-,CACCAGGAGGTTTGTCTCCGAGGAAGACCCAGGGAACTGGATATCTAGCG,Promoter (<=1kb),2,48814109,48903269,89161,1,Acvr2a-201,578,Acvr2a-201;Gm13489-201,Acvr2a;Gm13489,0;-4132,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,7,10,11480,ENSMUSG00000052155,conserved gene and region,2,48814621,48814980,360,*,360,29,0.588888889,0.929901131,0.080555556,1.40E-19,CpGisland,TRUE,U1,Pr-A
21610,cg02727946,0.000000183,0.00000522,0.035056148,0.97205753,gain,ns,0.0000159,0.00000888,1.791510391,0.074186734,pos,ns,0.000797516,0.002600189,0.306714497,0.759266607,pos,ns,0.1196057,0.00014644,0.0000894,1.637655668,0.102508159,pos,ns,0.908006517,Zfhx3,Zfhx3_Intron,8,108537960,108538009,108538008,108538009,50,-,TATCACACGCTACTTTGCAATTTGCATAAATACAGGGTTATTTTTTATCG,"Intron (Zfhx3-204/Zfhx3, intron 4 of 15)",8,107942644,108961630,1018987,1,Zfhx3-204,595316,Zfhx3-204,Zfhx3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,114,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24690,cg25297228,0.0000457,0.00000378,12.09595697,7.51E-28,gain,yes,-0.0000115,0.00000641,-1.791402205,0.074204121,neg,ns,0.003947919,0.001878925,2.101159018,0.036434094,pos,ns,1.438492031,-0.0000422,0.0000646,-0.652663249,0.514457089,neg,ns,0.10722414,Neurog2,Neurog2_Promoter,3,127627236,127627285,127627284,127627285,50,-,ACTCCTTGAATGACATCAAAAGAATGAGTTTCCATAGCTGTTGAAGCACG,Promoter (5-6kb),3,127633135,127635631,2497,1,Neurog2-201,-5899,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,13,14,11924,ENSMUSG00000027967,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
22666,cg22143274,0.0000208,0.00000529,3.939857569,0.000100779,gain,ns,-0.0000161,0.00000899,-1.79129234,0.074221781,neg,ns,-0.000772149,0.002633346,-0.293219861,0.769550294,neg,ns,0.113762992,0.0000379,0.0000906,0.418711266,0.675717106,pos,ns,0.91480769,Gm47892,Gm47892_Intergenic_downstream,13,115653162,115653211,115653162,115653163,50,-,CGGCTGGTTGGCAAAACTGACTTTGCTTTTGAAAATGACAGGTGGTACTC,Distal Intergenic,13,115719304,115719499,196,2,Gm47892-201,66337,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7556,cg18589550,0.00000743,0.00000301,2.467264564,0.014155089,gain,ns,0.00000916,0.00000511,1.791076516,0.074256482,pos,ns,0.004414898,0.001497922,2.947348852,0.003448387,pos,ns,2.462383967,-0.0000387,0.0000515,-0.750980443,0.453234105,neg,ns,0.066754094,Sobp,Sobp_fiveUTR,10,43174074,43174123,43174122,43174123,50,+,TTTTGTGTCTGGTTTCTGTGGAGATGAAATGGCTGCTGCCGCCGCCGGCG,Promoter (<=1kb),10,43002500,43174530,172031,2,Sobp-201,407,Sobp-201;Sobp-202,Sobp;Sobp,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,19,109205,ENSMUSG00000038248,conserved gene and region,10,43174113,43174627,515,*,515,69,0.761165049,0.951991856,0.133980583,2.29E-62,CpGisland,TRUE,U3,Pr-B
18259,cg19683912,-0.0000602,0.0000269,-2.239135245,0.025856201,loss,ns,0.0000818,0.0000456,1.791052736,0.074260307,pos,ns,0.007899481,0.013373817,0.590667651,0.555173495,pos,ns,0.255571276,-0.00048272,0.000459924,-1.049564477,0.294735933,neg,ns,0.526625515,Ap3b1,Ap3b1_Intergenic_downstream,13,94596901,94596950,94596949,94596950,50,+,GAGGAGGTGAAATGCCTTTCCATTAATTTTTTTTCTGCTTTATGCTCCCG,Distal Intergenic,13,94542303,94547867,5565,1,Ap3b1-202,54598,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,33,55,11774,ENSMUSG00000021686,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
2628,cg01258695,-0.00000671,0.00000407,-1.646039227,0.100769098,loss,ns,-0.0000124,0.00000692,-1.791052377,0.074260365,neg,ns,-0.003176273,0.002027896,-1.566290145,0.11830089,neg,ns,0.927011988,-0.0000335,0.0000697,-0.480001495,0.631564834,neg,ns,0.914988987,Camk2g,Camk2g_threeUTR,14,20736647,20736696,20736695,20736696,50,+,TCTTAAATGTAAAAAACACCTCGGTACAGCAGAGACAGACACGAAGGGCG,3' UTR,14,20734875,20794051,59177,2,Camk2g-203,57355,Camk2g-203;Camk2g-201;Camk2g-202;Camk2g-205;Camk2g-217;Camk2g-210;Camk2g-209;Camk2g-204;Camk2g-212;Camk2g-211;Ndst2-202,Camk2g;Camk2g;Camk2g;Camk2g;Camk2g;Camk2g;Camk2g;Camk2g;Camk2g;Camk2g;Ndst2,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,15,12325,ENSMUSG00000021820,conserved gene and region,14,20736668,20736817,150,*,150,10,0.593333333,0.765306122,0.066666667,0.00000279,CpGisland,TRUE,U11,Tr-P
22642,cg15126562,-0.00000749,0.0000068,-1.101679372,0.271455704,loss,ns,-0.0000207,0.0000116,-1.79100171,0.074268513,neg,ns,-0.007077126,0.003384969,-2.090750662,0.037364527,neg,ns,1.427540513,0.000208139,0.000116409,1.788004346,0.074751895,pos,ns,0.763356331,BC052040,BC052040_Intergenic_upstream,2,115538541,115538590,115538589,115538590,50,+,GACTAAGATTAATGACACTGCGCCAGCTTCTTTGTTTCTCTCTGCGGCCG,Distal Intergenic,2,115581716,115778768,197053,1,BC052040-203,-43126,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,9,49,399568,ENSMUSG00000040282,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9905,cg07461561,-0.000000531,0.00000169,-0.313954653,0.753766643,loss,ns,0.00000515,0.00000287,1.790971476,0.074273376,pos,ns,0.000408938,0.000841724,0.485833791,0.627428231,pos,ns,0.202435944,0.000000698,0.0000289,0.024125513,0.980768015,pos,ns,0.039779367,Nabp1,Nabp1_fiveUTR,1,51477819,51477868,51477867,51477868,50,+,ACTTACCTATCTCCAGGACAATAAAGACGACATTTAAGTTTTTCAGTCCG,Promoter (<=1kb),1,51465862,51478399,12538,2,Nabp1-209,531,Nabp1-209;Nabp1-204;Nabp1-210;Nabp1-201;Nabp1-205;Nabp1-207;Nabp1-206;Nabp1-202;Nabp1-203;Nabp1-208,Nabp1;Nabp1;Nabp1;Nabp1;Nabp1;Nabp1;Nabp1;Nabp1;Nabp1;Nabp1,0;0;0;0;0;0;0;0;-4423;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,2,109019,ENSMUSG00000026107,conserved gene but different region,1,51477678,51478075,398,*,398,25,0.608040201,0.693283166,0.06281407,2.38E-14,CpGisland,TRUE,U1,Pr-A
10979,cg07922361,0.00000228,0.00000438,0.519915037,0.603493853,gain,ns,0.0000133,0.00000744,1.790880726,0.074287975,pos,ns,0.005378061,0.002180282,2.466681905,0.014177686,pos,ns,1.848394658,-0.000133318,0.000075,-1.778052533,0.076375363,neg,ns,0.898344575,Nbea,Nbea_Exon,3,55966012,55966061,55966060,55966061,50,+,CCACCTCCCATTATGGCTTTGAGTAGTGAAGACGACAGACTTGAGTTACG,"Exon (Nbea-202/Nbea, exon 1 of 1)",3,55625195,56183701,558507,2,Nbea-201,217640,Nbea-201;Nbea-202,Nbea;Nbea,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,14,26422,ENSMUSG00000027799,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22785,cg05119060,0.0000664,0.00000488,13.61602474,2.04E-33,gain,yes,-0.0000148,0.00000829,-1.79075637,0.074307982,neg,ns,0.005734798,0.002427933,2.362008304,0.018794069,pos,ns,1.725979173,-0.0000932,0.0000835,-1.116162629,0.265216944,neg,ns,0.055067356,Dmbx1,Dmbx1_Promoter,4,115944251,115944300,115944299,115944300,50,+,CAAAGCAATTTGCCACGAGCCATCTCCTGGACAGGTTATTAGCGCGGCCG,Promoter (4-5kb),4,115915120,115939926,24807,2,Dmbx1-202,-4325,Dmbx1-203;Dmbx1-202,Dmbx1;Dmbx1,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,9,42,140477,ENSMUSG00000028707,conserved gene but different region,4,115943986,115944303,318,*,318,35,0.694968554,0.925340871,0.110062893,1.76E-28,CpGisland,TRUE,U13,Hc-P
7521,cg12247042,-0.0000139,0.00000421,-3.295490912,0.001096431,loss,ns,-0.0000128,0.00000715,-1.79065467,0.074324348,neg,ns,-0.001077898,0.002093282,-0.514932073,0.606967443,neg,ns,0.216834603,-0.000136184,0.000072,-1.891758875,0.059454981,neg,ns,0.904521825,Dnajb5,Dnajb5_Exon,4,42956669,42956718,42956669,42956670,50,+,CGGCCCTTCAGTGGCTTTGACCCAGATGACATGGATGTGGATGAAGATGA,"Exon (Dnajb5-201/Dnajb5, exon 4 of 5)",4,42949814,42959425,9612,1,Dnajb5-201,6855,Dnajb5-201;Dnajb5-203;Dnajb5-206;Dnajb5-202;Dnajb5-207;Dnajb5-204,Dnajb5;Dnajb5;Dnajb5;Dnajb5;Dnajb5;Dnajb5,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,8,56323,ENSMUSG00000036052,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24341,cg16528216,-0.0000306,0.0000298,-1.027757769,0.304865033,loss,ns,0.0000907,0.0000506,1.790543742,0.074342203,pos,ns,0.020896562,0.014836838,1.408424226,0.160007613,pos,ns,0.795859355,-0.00062641,0.000510238,-1.22768304,0.220497367,neg,ns,0.430716285,Fgf14,Fgf14_Exon,14,124676562,124676611,124676610,124676611,50,+,ATGCGTTCCTTTGCTGAAAATGTTCCAAAGAAACCACATTGATTTGGGCG,Promoter (<=1kb),14,123977907,124677127,699221,2,Fgf14-202,516,Fgf14-202,Fgf14,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,9,14169,ENSMUSG00000025551,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
13105,cg20388496,0.00000437,0.00000525,0.833569182,0.4051656,gain,ns,0.000016,0.00000891,1.790496585,0.074349794,pos,ns,0.003919553,0.002610622,1.501386203,0.134273557,pos,ns,0.872009507,-0.0000692,0.0000898,-0.770240401,0.441743874,neg,ns,0.204932556,Gm7627,Gm7627_Intergenic_downstream,7,69491110,69491159,69491110,69491111,50,-,CGGGTAATTAAAACCAAATTGCAGGCAGGAGATGACTGCACAAGAATGAT,Distal Intergenic,7,69605842,69606840,999,2,Gm7627-201,115730,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,11,665410,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15024,cg24261628,-0.000035,0.0000087,-4.019452116,0.0000733,loss,ns,0.0000265,0.0000148,1.790388541,0.074367189,pos,ns,-0.002676087,0.004331776,-0.617780634,0.537173509,neg,ns,0.269885413,0.00000688,0.000148969,0.046158372,0.963213742,pos,ns,0.625234595,Gphn,Gphn_Exon,12,78532622,78532671,78532670,78532671,50,+,TTAACAGTGTTTTCTTTTCCCCACTGCAAAACCAGGCTCGGCTTCCCTCG,"Exon (Gphn-201/Gphn, exon 10 of 24)",12,78226379,78684772,458394,1,Gphn-201,306243,Gphn-201;Gphn-202,Gphn;Gphn,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,11,268566,ENSMUSG00000047454,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21758,cg05055874,0.00000148,0.00000181,0.8183973,0.413759,gain,ns,-0.00000549,0.00000307,-1.790307761,0.074380197,neg,ns,-0.001389858,0.000898872,-1.546224857,0.123070495,neg,ns,0.909846053,-0.0000255,0.0000309,-0.823614455,0.41079183,neg,ns,0.9831505,Zfhx3,Zfhx3_Exon,8,108956939,108956988,108956987,108956988,50,-,GGGTTCAGCCCTCGATGCCAACAGACGACTATTCGGAGGAGTCTGACACG,"Exon (Zfhx3-204/Zfhx3, exon 16 of 16)",8,107942644,108961630,1018987,1,Zfhx3-204,1014295,Zfhx3-204;Zfhx3-201,Zfhx3;Zfhx3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,46,177,11906,ENSMUSG00000038872,conserved gene and region,8,108956951,108957024,74,*,74,9,0.608108108,1.316205534,0.121621622,6.35E-08,CpGisland,TRUE,NA,NRS
24748,cg07567900,-0.0000343,0.00000667,-5.141734315,0.000000483,loss,yes,-0.0000203,0.0000113,-1.790218835,0.074394518,neg,ns,0.010712902,0.003321745,3.225082645,0.001393761,pos,ns,2.855811817,-0.000234788,0.000114235,-2.055318916,0.040685697,neg,ns,0.907545046,Gls2,Gls2_threeUTR,10,128200165,128200214,128200213,128200214,50,+,GGATCCAGGTGTGTGAGCAGCAACATTGTGCTCCTGACCCAGGCATTCCG,3' UTR,10,128194457,128209939,15483,1,Gls2-201,5708,Gls2-201;Gls2-202;Gls2-208;Gls2-203;Gls2-211;Gls2-205;Gls2-210;Gls2-206;Gls2-209;Gls2-207,Gls2;Gls2;Gls2;Gls2;Gls2;Gls2;Gls2;Gls2;Gls2;Gls2,0;5528;0;5443;0;0;5359;-3042;-3469;-3550,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,2,216456,ENSMUSG00000044005,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25908,cg01204508,-0.00000237,0.00000838,-0.282692867,0.777600946,loss,ns,0.0000255,0.0000142,1.789914132,0.074443608,pos,ns,-0.001271827,0.004171174,-0.304908785,0.760640231,neg,ns,0.118820708,0.0000249,0.000143446,0.173580105,0.862308758,pos,ns,0.893454116,Mid2,Mid2_Exon,X,140678157,140678206,140678157,140678158,50,+,CGCATTTTGGTATCAAGCTGCAGCTCTGGTGAATCCATTGAACCCATTAC,"Exon (Mid2-204/Mid2, exon 2 of 2)",20,140664599,140678708,14110,1,Mid2-204,13558,Mid2-204;Mid2-202;Mid2-201;Mid2-203,Mid2;Mid2;Mid2;Mid2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,11,23947,ENSMUSG00000000266,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9075,cg11878585,0.00002,0.00000547,3.663511838,0.000292502,gain,ns,-0.0000166,0.00000929,-1.789573755,0.074498477,neg,ns,0.005997642,0.002722473,2.203012196,0.028329331,pos,ns,1.547763681,-0.000336285,0.0000936,-3.591804063,0.000381737,neg,ns,0.788140274,Cnih1,Cnih1_Exon,14,46783833,46783882,46783881,46783882,50,-,GCAATTTTGACTCTTTTAATCTTTTTGACCTTTTCAACTGTCTTTGGCCG,"Exon (Cnih1-202/Cnih1, exon 3 of 6)",14,46775567,46788411,12845,2,Cnih1-201,4529,Cnih1-201;Cnih1-203;Cnih1-202,Cnih1;Cnih1;Cnih1,0;-3571;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,12793,ENSMUSG00000015759,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24095,cg15682828,0.000069,0.00000464,14.87449914,3.84E-38,gain,yes,-0.0000141,0.00000788,-1.78923199,0.074553603,neg,ns,0.008365639,0.002309001,3.623055414,0.000340091,pos,ns,3.468404886,0.0000168,0.0000794,0.212074074,0.832188614,pos,ns,0.165408636,Zic2,Zic2_Exon,14,122476467,122476516,122476515,122476516,50,-,ACTGAGCAATCCCAAGAAGAGCTGCAACAAAACTTTCAGCACCATGCACG,"Exon (Zic2-201/Zic2, exon 1 of 3)",14,122475435,122479852,4418,1,Zic2-201,1032,Zic2-201;Zic2-202,Zic2;Zic2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,7,22772,ENSMUSG00000061524,conserved gene and region,14,122476515,122476600,86,*,86,9,0.662790698,0.955555556,0.104651163,0.000000248,CpGisland,TRUE,U13,Hc-P
23744,cg24163411,-0.00000816,0.00000484,-1.685317032,0.092933716,loss,ns,-0.0000147,0.00000822,-1.789169749,0.074563646,neg,ns,-0.007133455,0.00240858,-2.961684787,0.003296089,neg,ns,2.482001075,0.000165387,0.0000828,1.996680245,0.04673407,pos,ns,0.099730549,Foxo6,Foxo6_Intergenic_downstream,4,120263564,120263613,120263612,120263613,50,-,CTTCTTTGGCACAAATAATGGCTTTTTATGAATAAATCATGTGTCAGACG,Distal Intergenic,4,120267079,120287349,20271,2,Foxo6-201,23785,Foxo6-201,Foxo6,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,42,329934,ENSMUSG00000052135,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20529,cg20474425,-0.0000168,0.00000393,-4.281990936,0.0000247,loss,ns,-0.0000119,0.00000667,-1.789165814,0.074564281,neg,ns,-0.001880227,0.001955537,-0.96148886,0.337055777,neg,ns,0.472298224,0.0000512,0.0000673,0.761753456,0.446786294,pos,ns,0.957035153,Gpr84,Gpr84_Intergenic_downstream,15,103300257,103300306,103300305,103300306,50,+,GCTGAGCGGGTTATTTATCGGAGCCAGCGCTGCTCCAGAAGGTCAGGACG,Distal Intergenic,15,103308235,103310612,2378,2,Gpr84-201,10306,Copz1-202;Copz1-201;Copz1-204,Copz1;Copz1;Copz1,0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,5,80910,ENSMUSG00000063234,mapped to different genes,15,103300161,103300329,169,*,169,14,0.621301775,0.887471868,0.082840237,7.36E-10,CpGisland,TRUE,U11,Tr-P
9069,cg27533327,0.0000956,0.0000121,7.909826222,4.59E-14,gain,yes,0.0000367,0.0000205,1.789026423,0.074586776,pos,ns,0.030540541,0.006015248,5.077186959,0.000000662,pos,ns,6.179065916,-0.001129491,0.000206864,-5.460068973,9.77E-08,neg,yes,0.189901538,Cnnm2,Cnnm2_Exon,19,46762710,46762759,46762758,46762759,50,-,ACTACCTGCTGTGCTCACTGCTGCTGGGCAACGTGCTGGTCAACACCACG,"Exon (Cnnm2-202/Cnnm2, exon 1 of 8)",19,46761596,46880192,118597,1,Cnnm2-202,1114,Cnnm2-202;Cnnm2-201;Cnnm2-203,Cnnm2;Cnnm2;Cnnm2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,8,94219,ENSMUSG00000064105,conserved gene and region,19,46762560,46762882,323,*,323,24,0.622291022,0.767524753,0.074303406,1.81E-15,CpGisland,TRUE,NA,NRS
9063,cg03330145,0.0000444,0.00000904,4.913990103,0.00000145,gain,yes,0.0000275,0.0000154,1.788763274,0.07462926,pos,ns,0.012666918,0.004498256,2.815962073,0.005174761,pos,ns,2.286109673,0.0000139,0.000154695,0.090054376,0.928302161,pos,ns,0.593721822,Gm8863,Gm8863_Intergenic_upstream,9,46751360,46751409,46751360,46751361,50,-,CGGAGAAACTATTGATTTTAGTTGATACGCATTGATTCCCAGAAAACAGG,Distal Intergenic,9,46713233,46714158,926,2,Gm8863-201,-37251,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,20,667890,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21905,cg17942350,0.000110674,0.0000102,10.81375735,2.44E-23,gain,yes,-0.0000311,0.0000174,-1.788530325,0.074666884,neg,ns,0.017477372,0.005093845,3.431076682,0.000682724,pos,ns,3.165754988,-0.000425845,0.000175177,-2.43094467,0.015626235,neg,ns,0.089438865,Bdnf,Bdnf_Intron,2,109678250,109678299,109678250,109678251,50,-,CGTGCTGCAAAGGAACTCCAAGGCGCCCGCATCACCATCGCCACCCACCC,"Intron (Bdnf-201/Bdnf, intron 1 of 1)",2,109674700,109727007,52308,1,Bdnf-201,3550,Bdnf-201;Bdnf-207;Bdnf-208;Bdnf-210;Bdnf-206,Bdnf;Bdnf;Bdnf;Bdnf;Bdnf,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,18,12064,ENSMUSG00000048482,conserved gene and region,2,109678051,109678344,294,*,294,20,0.612244898,0.752784535,0.068027211,3.01E-12,CpGisland,TRUE,NA,NRS
5270,cg25963537,-0.00000936,0.00000391,-2.392031428,0.01735091,loss,ns,0.0000119,0.00000665,1.788383083,0.074690674,pos,ns,0.001257424,0.001948142,0.645447674,0.51911455,pos,ns,0.284736798,-0.000104195,0.000067,-1.555226607,0.120912398,neg,ns,0.930030483,Ranbp17,Ranbp17_Intron,11,33240506,33240555,33240554,33240555,50,+,TTACTCTGGCCATCCGTTCAGTCCAGCCGACTCAGAAGTAATTTTATACG,"Intron (Ranbp17-202/Ranbp17, intron 25 of 27)",11,33211795,33513746,301952,2,Ranbp17-202,273191,Ranbp17-202,Ranbp17,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,31,66011,ENSMUSG00000040594,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26259,cg06474529,0.00000132,0.0000198,0.06698153,0.946639585,gain,ns,-0.00006,0.0000336,-1.788364562,0.074693667,neg,ns,0.006131841,0.009834221,0.623520711,0.533400892,pos,ns,0.272946263,0.0000465,0.000338198,0.137434902,0.890776265,pos,ns,0.803950949,Rin2,Rin2_threeUTR,2,145860106,145860155,145860106,145860107,50,+,CGTCAGCTCTGCCTTATAAATGGAGTGCATTCTATCAAAACCAGGACGCC,3' UTR,2,145785980,145887616,101637,1,Rin2-202,74126,Rin2-202;Rin2-201;Rin2-208;Rin2-207,Rin2;Rin2;Rin2;Rin2,0;0;0;-2489,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,4,74030,ENSMUSG00000001768,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
12296,cg25997407,-0.0000201,0.00000931,-2.161282337,0.031438894,loss,ns,0.0000283,0.0000158,1.788103062,0.074735934,pos,ns,0.00752855,0.004634009,1.62462978,0.105257724,pos,ns,0.977746026,-0.000140389,0.000159363,-0.880939262,0.379033166,neg,ns,0.871704374,Gm18541,Gm18541_Intergenic_upstream,9,63876432,63876481,63876480,63876481,50,-,TCCTCCATGAAACTTCAGTGGGATTGTTAAAGGCACCAATTTCCTTATCG,Distal Intergenic,9,63898265,63898802,538,1,Gm18541-201,-21833,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,13,100417338,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
260,cg19980763,-0.0000159,0.00000868,-1.830397859,0.068150439,loss,ns,0.0000264,0.0000148,1.788047016,0.074744995,pos,ns,0.007827655,0.004321558,1.811304018,0.071061556,pos,ns,1.148365287,-0.000237615,0.000148618,-1.5988276,0.110877602,neg,ns,0.671731858,Gm6140,Gm6140_Intergenic_upstream,3,4901496,4901545,4901496,4901497,50,+,CGTCAATCACGCCAGGAGGAAAAATAGTGGCATGATTTGTTATCTGTTAT,Distal Intergenic,3,4890266,4891231,966,2,Gm6140-201,-10265,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,620283,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8943,cg16547398,0.00010397,0.0000167,6.208448234,1.72E-09,gain,yes,-0.0000509,0.0000285,-1.787907573,0.074767544,neg,ns,0.016074831,0.00833489,1.928619542,0.054690985,pos,ns,1.262084254,-0.000237048,0.000286636,-0.826999548,0.408873426,neg,ns,0.446566296,4931429L15Rik,4931429L15Rik_Intron,9,46377558,46377607,46377606,46377607,50,-,TTATTTCACACTTGTATGGCCACCTGCTAGGAACTGTTTGTTCAGTTTCG,"Intron (Gm31374-201/Gm31374-201, intron 4 of 4)",9,46303361,46319986,16626,2,4931429L15Rik-201,-57621,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,22,74361,ENSMUSG00000056617,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
405,cg22171829.1,-0.00000152,0.0000105,-0.144607554,0.8851147,loss,ns,-0.0000319,0.0000179,-1.787905599,0.074767863,neg,ns,0.007506288,0.005231424,1.434845968,0.152339069,pos,ns,0.817188702,-0.000196703,0.000179908,-1.093352201,0.27508807,neg,ns,0.100823932,Pdk4,Pdk4_Exon,6,5496029,5496078,5496077,5496078,50,+,TCACCAAAGTCCAGTAGCTGCTTCATGGACAGCGGGGACGGGCTGTAGCG,Promoter (<=1kb),6,5483351,5496309,12959,2,Pdk4-201,231,Pdk4-201;Pdk4-203;Pdk4-202,Pdk4;Pdk4;Pdk4,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,27273,ENSMUSG00000019577,conserved gene and region,6,5495996,5496279,284,*,284,25,0.690140845,0.744234801,0.088028169,6.38E-18,CpGisland,TRUE,U1,Pr-A
20001,cg03890794,-0.00000433,0.00000635,-0.682478836,0.495445871,loss,ns,0.0000193,0.0000108,1.787763076,0.074790916,pos,ns,0.000962019,0.003158639,0.304567569,0.760899883,pos,ns,0.118672483,-0.000104454,0.000108625,-0.961600769,0.336999628,neg,ns,0.818346874,Ephb1,Ephb1_threeUTR,9,102039208,102039257,102039208,102039209,50,-,CGCACATGCTTAGAGAGAGAGAAAAGACAGCCAAGCCCAGTGTAACATGA,3' UTR,9,101922128,102354693,432566,2,Ephb1-201,315436,Ephb1-201;Ephb1-202;Ephb1-203,Ephb1;Ephb1;Ephb1,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,7,270190,ENSMUSG00000032537,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5354,cg03183597,-0.00000658,0.00000706,-0.93261419,0.351744988,loss,ns,0.0000214,0.000012,1.787736414,0.074795229,pos,ns,-0.000120066,0.003513339,-0.034174419,0.972760059,neg,ns,0.01199427,0.0002721,0.000120823,2.252046216,0.025018934,pos,ns,0.071672541,Lmx1b,Lmx1b_Intron,2,33580834,33580883,33580834,33580835,50,+,CGATTATTGAGGAAGCTGCCAGTGCTAATCGCCCGCAGTCATTTGACAAT,"Intron (Lmx1b-201/Lmx1b, intron 2 of 7)",2,33560965,33640608,79644,2,Lmx1b-201,59725,Lmx1b-201;Lmx1b-203;Lmx1b-204;Lmx1b-202,Lmx1b;Lmx1b;Lmx1b;Lmx1b,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,26,16917,ENSMUSG00000038765,conserved gene and region,2,33580834,33580989,156,*,156,15,0.564102564,1.21875,0.096153846,1.69E-11,CpGisland,TRUE,U3,Pr-B
22227,cg23681447,-0.00000449,0.0000032,-1.404502993,0.161170261,loss,ns,0.00000971,0.00000543,1.787629511,0.074812525,pos,ns,-0.001435124,0.001591348,-0.901828792,0.367847957,neg,ns,0.434331652,0.0000695,0.0000547,1.270648851,0.204806336,pos,ns,0.916429029,Gm6793,Gm6793_Intergenic_upstream,8,112078791,112078840,112078839,112078840,50,-,TAAGATAATTAAAGAACATTATAGCAGGTGACAGCTGTTGCCGAATGCCG,Distal Intergenic,8,112013953,112015008,1056,2,Gm6793-201,-63832,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,627828,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15422,cg18764936,0.0000387,0.00000798,4.843313971,0.00000202,gain,ns,-0.0000242,0.0000136,-1.787628307,0.07481272,neg,ns,0.007685384,0.003973695,1.934065036,0.054015076,pos,ns,1.26748501,-0.00043951,0.000136655,-3.216198902,0.001436178,neg,ns,0.576227638,Tnrc6b,Tnrc6b_Exon,15,80876392,80876441,80876440,80876441,50,+,TCAATGGTGGCAACAATGCCAAAAGGGTGGCAGTGCCGAACGGACAACCG,"Exon (Tnrc6b-201/Tnrc6b, exon 7 of 25)",15,80711313,80941085,229773,1,Tnrc6b-201,165079,Tnrc6b-201;Tnrc6b-204;Tnrc6b-207;Tnrc6b-208,Tnrc6b;Tnrc6b;Tnrc6b;Tnrc6b,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,20,24,213988,ENSMUSG00000047888,conserved gene and region,15,80876428,80876567,140,*,140,14,0.657142857,0.933333333,0.1,5.38E-11,CpGisland,TRUE,U10,Tr-S
13800,cg11215720,-0.000000112,0.000003,-0.037500731,0.970109895,loss,ns,-0.00000911,0.00000509,-1.787613762,0.074815074,neg,ns,0.002283504,0.001492487,1.529999168,0.127036694,pos,ns,0.896070818,-0.0000254,0.0000513,-0.495163655,0.620835391,neg,ns,0.929497635,Ypel5,Ypel5_Exon,17,72848631,72848680,72848631,72848632,50,+,CGCCACATGGTTCGAGATGTGAGCTGCAAAAACTGCAATAGCAAACTGGG,"Exon (Ypel5-201/Ypel5, exon 3 of 3)",17,72836453,72851195,14743,1,Ypel5-201,12178,Ypel5-201;Ypel5-202;Ypel5-205;Ypel5-203;Ypel5-204,Ypel5;Ypel5;Ypel5;Ypel5;Ypel5,0;0;0;10260;7700,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,383295,ENSMUSG00000039770,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7889,cg01676484,-0.0000122,0.0000041,-2.96214805,0.003291272,loss,ns,0.0000125,0.00000697,1.78746801,0.074838661,pos,ns,-0.000144578,0.002042705,-0.070777923,0.94362014,neg,ns,0.025202798,0.0000856,0.0000702,1.218927501,0.223798431,pos,ns,0.852012957,Runx2,Runx2_Intron,17,44618520,44618569,44618568,44618569,50,+,ATGAAATTCATAATGAGCCAAGTGGCTTCAGATGTGGTTGCGTTCCTCCG,"Intron (Runx2-212/Runx2, intron 5 of 5)",17,44495987,44736176,240190,2,Runx2-212,117607,Runx2-212;Runx2-214;Runx2-203;Runx2-202;Runx2-213;Runx2-204;Runx2-210;Runx2-211;Runx2-207;Runx2-201;Runx2-209,Runx2;Runx2;Runx2;Runx2;Runx2;Runx2;Runx2;Runx2;Runx2;Runx2;Runx2,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,20,12393,ENSMUSG00000039153,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1153,cg22624300,0.000028,0.0000164,1.706495896,0.088917244,gain,ns,0.0000497,0.0000278,1.787135766,0.074892451,pos,ns,0.030342641,0.008152272,3.721985681,0.000234679,pos,ns,3.629525272,-0.001070447,0.000280356,-3.818171963,0.00016236,neg,ns,0.409528136,Rpl23a-ps13,Rpl23a-ps13_Intergenic_upstream,X,11827036,11827085,11827084,11827085,50,+,TCAAAGTGGTTACAATGCTGTTATTGTAAAACCTTCACACCAGAAGAGCG,Distal Intergenic,20,11867265,11867705,441,1,Rpl23a-ps13-201,-40180,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,13,14,628338,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20086,cg23240071,-0.000034,0.00000608,-5.596948213,0.000000048,loss,yes,-0.0000185,0.0000103,-1.787090585,0.074899768,neg,ns,-0.00167762,0.003027177,-0.554186272,0.579850922,neg,ns,0.236683648,-0.000161511,0.000104104,-1.551431838,0.121818508,neg,ns,0.750833377,Pcbp2,Pcbp2_Intron,15,102493649,102493698,102493697,102493698,50,+,CCTCTGTTACAGTTTAGAAAACGCTAAACCCTCCTCCCAGGCAGCCTCCG,"Intron (Pcbp2-201/Pcbp2, intron 14 of 14)",15,102470550,102500061,29512,1,Pcbp2-201,23099,Map3k12-201;Pcbp2-220;Pcbp2-201;Pcbp2-212;Pcbp2-231;Pcbp2-214;Pcbp2-216;Pcbp2-203;Pcbp2-217;Pcbp2-202;Pcbp2-206;Pcbp2-227;Pcbp2-219;Pcbp2-213;Pcbp2-207;Pcbp2-224;Pcbp2-228;Pcbp2-211;Pcbp2-226;Pcbp2-230;Pcbp2-210;Pcbp2-204;Pcbp2-215;Pcbp2-229;Pcbp2-225,Map3k12;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,8,18521,ENSMUSG00000056851,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4495,cg10426149,0.00014804,0.00000962,15.39523327,4.05E-40,gain,yes,-0.0000292,0.0000163,-1.786838226,0.07494065,neg,ns,0.00624014,0.004785976,1.30383874,0.193255931,pos,ns,0.713867168,-0.000005,0.000164589,-0.030356398,0.975802352,neg,ns,0.459054669,Spred3,Spred3_Promoter,7,29168989,29169038,29169037,29169038,50,-,GGATGGGATTTTGTGAATGAGCAGTCACGTGACGCTGCTTCCTTTGTCCG,Promoter (<=1kb),7,29165923,29169841,3919,2,Spred3-202,803,Ggn-202;Ggn-201;Ggn-203;Ggn-205;Ggn-204;Spred3-201;Spred3-203;Spred3-202;Spred3-204,Ggn;Ggn;Ggn;Ggn;Ggn;Spred3;Spred3;Spred3;Spred3,-1172;-1352;-1352;-1369;-1466;0;-1839;0;1373,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,2,7,101809,ENSMUSG00000037239,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
13064,cg09557412,-0.0000128,0.0000125,-1.022289246,0.307441118,loss,ns,-0.0000381,0.0000213,-1.786818483,0.074943849,neg,ns,-0.008003195,0.006242683,-1.28201206,0.200796346,neg,ns,0.697244194,-0.000172101,0.000214685,-0.80164361,0.423373186,neg,ns,0.741770282,Chd3,Chd3_Exon,11,69350118,69350167,69350118,69350119,50,+,CGAGAGACATGACTCCAATGCGGGTCAACACCTGCTGGCGACTCAGTCCC,"Exon (Chd3-202/Chd3, exon 29 of 40)",11,69343273,69369406,26134,2,Chd3-202,19239,Chd3-205;Chd3-203;Chd3-202;Chd3-211;Chd3-201;Chd3-204;Chd3-208;Chd3-206;Chd3-209,Chd3;Chd3;Chd3;Chd3;Chd3;Chd3;Chd3;Chd3;Chd3,0;0;0;0;0;0;0;4300;6443,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,22,26,216848,ENSMUSG00000018474,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1040,cg20728571,-0.0000552,0.00000905,-6.097916522,3.19E-09,loss,yes,0.0000275,0.0000154,1.786732524,0.074957779,pos,ns,-0.010115421,0.004502483,-2.246631741,0.025367143,neg,ns,1.595728446,0.00022922,0.00015484,1.480363695,0.139791788,pos,ns,0.705618439,Gm14485,Gm14485_Intergenic_upstream,X,11114048,11114097,11114048,11114049,50,-,CGTCTGCAAACACTGATTGTCGGCTGCTTTCCATAAAATACGCCCACTGT,Distal Intergenic,20,11020515,11021007,493,2,Gm14485-201,-93090,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,9,547156,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4345,cg05317890,-0.00000981,0.00000603,-1.625300623,0.105114697,loss,ns,0.0000183,0.0000103,1.786518583,0.074992458,pos,ns,0.007451776,0.003003035,2.481414625,0.013616045,pos,ns,1.86594902,-0.000316026,0.000103274,-3.060064387,0.002406281,neg,ns,0.873841172,Opcml,Opcml_Intron,9,28440294,28440343,28440294,28440295,50,-,CGACACAATAATCCAGGGTTATTTAACAGAGCATTTACCCTGAAAACAGT,"Intron (Opcml-202/Opcml, intron 2 of 7)",9,27790947,28925410,1134464,1,Opcml-202,649347,Opcml-202;Opcml-201;Opcml-204;Opcml-208,Opcml;Opcml;Opcml;Opcml,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,12,330908,ENSMUSG00000062257,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2286,cg02041498,-0.0000058,0.00000857,-0.676356421,0.499318686,loss,ns,-0.000026,0.0000146,-1.786309966,0.075026286,neg,ns,-0.010150866,0.004265368,-2.379833611,0.017925023,neg,ns,1.746540282,0.000372017,0.000146686,2.53614846,0.011698579,pos,ns,0.803621094,Meis1,Meis1_Intron,11,18945140,18945189,18945140,18945141,50,+,CGTTGTGGCGTTTGCTAGTGACAGAAACTGAAAATGTCATATTATCTGCC,"Intron (Meis1-206/Meis1, intron 7 of 9)",11,18879817,19018985,139169,2,Meis1-206,73796,Meis1-206;Meis1-202;Meis1-209;Meis1-201;Meis1-203;Meis1-208;Meis1-207,Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,88,17268,ENSMUSG00000020160,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8907,cg15955271,0.00000334,0.00000195,1.715368961,0.087276825,gain,ns,-0.0000059,0.0000033,-1.786134061,0.07505482,neg,ns,-0.000684328,0.000968212,-0.70679594,0.480224219,neg,ns,0.318555941,0.0000323,0.0000333,0.970298097,0.332654364,pos,ns,0.07223556,Helt,Helt_Promoter,8,46294708,46294757,46294756,46294757,50,-,GGAGGCGCCCCGTTTGTTCCCAGGCTTTTCTCACACGACTTGGTGACACG,Promoter (<=1kb),8,46292039,46294671,2633,2,Helt-201,-86,Helt-201;Helt-202;Helt-203,Helt;Helt;Helt,0;-719;-1373,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,15,22,234219,ENSMUSG00000047171,conserved gene and region,8,46294678,46294897,220,*,220,21,0.65,0.923630548,0.095454546,6.99E-16,CpGisland,TRUE,U13,Hc-P
46,cg26056026,0.0000417,0.0000202,2.069082663,0.039366834,gain,ns,-0.0000612,0.0000343,-1.785997365,0.075076999,neg,ns,0.003535853,0.010038878,0.352215977,0.724915618,pos,ns,0.139712544,-0.001889687,0.000345236,-5.473605226,9.11E-08,neg,yes,0.316782986,Lrp5,Lrp5_Intron,19,3641972,3642021,3641972,3641973,50,+,CGGTCCATGGCTGAGAACAGCAGCTGCCTTCTGTTTGCAAAGTCAACGCC,"Intron (Lrp5-201/Lrp5, intron 5 of 22)",19,3584828,3686556,101729,2,Lrp5-201,44535,Lrp5-201;Lrp5-204;Lrp5-202,Lrp5;Lrp5;Lrp5,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,2,16973,ENSMUSG00000024913,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10810,cg00975350,-0.00000725,0.00000201,-3.607466753,0.0003603,loss,ns,0.00000609,0.00000341,1.785704973,0.07512446,pos,ns,0.002020859,0.000999872,2.021116929,0.044126863,pos,ns,1.355296949,-0.0000377,0.0000344,-1.095438269,0.274174998,neg,ns,0.053725223,Nfkbia,Nfkbia_Promoter,12,55491906,55491955,55491906,55491907,50,-,CGGTGTTTTCCGCGAGGTTATTATGAGCTGAGTGTTCCTGGCAGGCGCCC,Promoter (<=1kb),12,55489410,55492647,3238,2,Nfkbia-201,692,Nfkbia-201;Nfkbia-202,Nfkbia;Nfkbia,0;-96,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,3,3,18035,ENSMUSG00000021025,conserved gene but different region,12,55491803,55492666,864,*,864,101,0.744212963,0.844354136,0.116898148,4.01E-84,CpGisland,TRUE,U1,Pr-A
27805,cg23197154,-0.0000646,0.0000115,-5.602605521,4.66E-08,loss,yes,-0.000035,0.0000196,-1.785483076,0.075160494,neg,ns,0.01899399,0.005737439,3.310534225,0.001041078,pos,ns,2.982516685,-0.000876992,0.00019731,-4.444741635,0.0000123,neg,ns,0.417158876,Esrrg,Esrrg_Intron,1,187808142,187808191,187808142,187808143,50,+,CGAATTGCAAGCCACTGTAGCCAAAATAAATATAATCTGCTTTTTGGATT,"Intron (Esrrg-204/Esrrg, intron 3 of 3)",1,187608791,188043502,434712,1,Esrrg-204,199351,Esrrg-204;Esrrg-203,Esrrg;Esrrg,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,60,26381,ENSMUSG00000026610,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9981,cg13609316,-0.00000815,0.00000625,-1.302445582,0.193730889,loss,ns,-0.000019,0.0000106,-1.785226798,0.075202129,neg,ns,-0.000729151,0.003112841,-0.234239732,0.814953496,neg,ns,0.088867173,-0.000175593,0.00010705,-1.640282603,0.101960672,neg,ns,0.940549226,Hectd1,Hectd1_Exon,12,51769225,51769274,51769273,51769274,50,+,CTGAAACAGTGGATGAAACAGGTTTGGGTGATGCCACTGTATCAGGGTCG,"Exon (Hectd1-201/Hectd1, exon 25 of 43)",12,51743722,51829536,85815,2,Hectd1-201,60262,Hectd1-201;Hectd1-202;Hectd1-204,Hectd1;Hectd1;Hectd1,0;0;-3994,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,19,19,207304,ENSMUSG00000035247,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9255,cg07838451,0.000103499,0.000014,7.398446326,1.30E-12,gain,yes,-0.0000424,0.0000238,-1.78521938,0.075203334,neg,ns,0.052577106,0.006962619,7.551340417,4.86E-13,pos,yes,12.31338226,-0.001120271,0.000239444,-4.678635746,0.00000432,neg,ns,0.739514184,Cadm1,Cadm1_Intron,9,47856846,47856895,47856846,47856847,50,-,CGATTGCATCTTCTAATACTGTTTATCCTGCATTAGTGTTTACTTAGGGG,"Intron (Cadm1-206/Cadm1, intron 8 of 8)",9,47530244,47858115,327872,1,Cadm1-206,326602,Cadm1-204;Cadm1-206;Cadm1-203,Cadm1;Cadm1;Cadm1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,77,54725,ENSMUSG00000032076,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2173,cg05850448,-0.00000443,0.00000346,-1.278787261,0.201928457,loss,ns,0.0000105,0.00000588,1.785085391,0.07522511,pos,ns,-0.0017051,0.001723179,-0.989508158,0.32318628,neg,ns,0.490547084,0.0000222,0.0000593,0.375137188,0.707814969,pos,ns,0.911617644,Pou6f2,Pou6f2_Intron,13,18204999,18205048,18205047,18205048,50,+,GAAAATGTCCTCAATATTCCGCTGTTTGGGACTTTACAATGATCCTTCCG,"Intron (Pou6f2-201/Pou6f2, intron 3 of 7)",13,18121098,18382041,260944,2,Pou6f2-201,176993,Pou6f2-201;Pou6f2-202;Pou6f2-203,Pou6f2;Pou6f2;Pou6f2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,18,218030,ENSMUSG00000009734,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5197,cg03346007,-0.0000893,0.0000139,-6.424939737,4.96E-10,loss,yes,0.0000421,0.0000236,1.785058495,0.075229482,pos,ns,-0.012586041,0.006917166,-1.819537188,0.06979397,neg,ns,1.156182096,0.000478021,0.000237881,2.009500082,0.045350492,pos,ns,0.793957034,Ets1,Ets1_Intron,9,32710540,32710589,32710540,32710541,50,-,CGGTTGTTAAAACTGTGGTTACTATTAACCTGGTTACAGAAAATTTTCCA,"Intron (Ets1-203/Ets1, intron 3 of 3)",9,32636221,32729830,93610,1,Ets1-203,74319,Ets1-203;Ets1-207;Ets1-201;Ets1-202;Ets1-206;Ets1-205,Ets1;Ets1;Ets1;Ets1;Ets1;Ets1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,8,23871,ENSMUSG00000032035,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
13141,cg13403155,0.0000169,0.00000436,3.869829702,0.0001328,gain,ns,-0.0000132,0.0000074,-1.785046865,0.075231372,neg,ns,-0.000424981,0.002167626,-0.196058225,0.84469305,neg,ns,0.073301079,-0.0000744,0.0000745,-0.998171009,0.318974936,neg,ns,0.884509286,Efnb3,Efnb3_Exon,11,69556106,69556155,69556106,69556107,50,+,CGAAGGCTTGGCCCGCCGTCTCCGCCAACACATGGCACCCCCAGCCCCTG,"Exon (Efnb3-201/Efnb3, exon 5 of 5)",11,69554092,69560205,6114,2,Efnb3-201,4050,Efnb3-201,Efnb3,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,6,13643,ENSMUSG00000003934,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5784,cg09699671,-0.00000267,0.00000247,-1.084004369,0.279205211,loss,ns,0.00000748,0.00000419,1.784495014,0.075321119,pos,ns,0.001260534,0.001227733,1.026716924,0.305354237,pos,ns,0.51519605,0.000000408,0.0000422,0.009655607,0.992302271,pos,ns,0.948827647,Nipal2,Nipal2_Intergenic_upstream,15,34741607,34741656,34741607,34741608,50,-,CGGCAAATTGCATTGTGATTTATTTGTCAATGTTTTTATAGGTTAGGCGT,Distal Intergenic,15,34572799,34679212,106414,2,Nipal2-201,-62444,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,223473,ENSMUSG00000038879,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6647,cg01814115,0.0000183,0.00000563,3.245895666,0.001298888,gain,ns,-0.0000171,0.00000956,-1.784480825,0.075323428,neg,ns,-0.00859981,0.002802131,-3.069024559,0.002337353,neg,ns,2.631275676,0.000164716,0.0000964,1.709295757,0.088396942,pos,ns,0.744425372,Uri1,Uri1_Intergenic_downstream,7,37910178,37910227,37910178,37910179,50,+,CGGCGGCAACTGTTCAAAGGTCAGAGGACTTTGTGGCCTGGAAATACCCA,Distal Intergenic,7,37961301,37962528,1228,2,Uri1-203,52301,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,19,27,19777,ENSMUSG00000030421,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17219,cg21920032,-0.0000125,0.00000717,-1.746041332,0.081794368,loss,ns,0.0000217,0.0000122,1.784437521,0.075330474,pos,ns,0.002271143,0.003566446,0.636808591,0.524719487,pos,ns,0.280072807,-0.000382937,0.00012265,-3.122200203,0.001964325,neg,ns,0.605258771,Nrxn3,Nrxn3_Exon,12,89254803,89254852,89254851,89254852,50,+,TTTGAGACCCCAGAGGCTTACATCAGCTTGCCCAAGTGGAACACTAAACG,"Exon (Nrxn3-209/Nrxn3, exon 7 of 8)",12,88722876,89261571,538696,1,Nrxn3-209,531927,Nrxn3-209;Nrxn3-213;Nrxn3-208;Nrxn3-205;Nrxn3-201;Nrxn3-210,Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,39,18191,ENSMUSG00000066392,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U14,Hc-H
17445,cg22934027,-0.00000768,0.00000187,-4.112765178,0.0000501,loss,ns,0.00000566,0.00000317,1.7843011,0.075352676,pos,ns,0.001968659,0.000929101,2.118885879,0.034895091,pos,ns,1.457235666,-0.0000573,0.000032,-1.792922402,0.073960117,neg,ns,0.064608869,Gatad2b,Gatad2b_Exon,3,90292904,90292953,90292952,90292953,50,+,GCTGTCGAAGACCCGGATGTGTCTGGGACTGGCAGAGGTACCCATTAACG,Promoter (<=1kb),3,90293178,90363407,70230,1,Gatad2b-205,-225,Gatad2b-205;Gatad2b-206;Gatad2b-202;Gatad2b-204,Gatad2b;Gatad2b;Gatad2b;Gatad2b,0;-231;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,6,229542,ENSMUSG00000042390,conserved gene but different region,3,90292704,90292961,258,*,258,18,0.562015504,0.884571429,0.069767442,2.91E-11,CpGisland,TRUE,NA,NRS
4297,cg12903634,0.00000114,0.00000673,0.16967316,0.865377853,gain,ns,0.0000204,0.0000114,1.784126253,0.075381139,pos,ns,-0.001173173,0.00334969,-0.350233444,0.726401356,neg,ns,0.138823354,0.0000193,0.000115196,0.167652077,0.866966315,pos,ns,0.585495037,Zfp800,Zfp800_Exon,6,28244165,28244214,28244213,28244214,50,+,GTTTCAATGTACTTTTTTAGTTCTTCCATCTTTTTCTTGTGTACTTTTCG,"Exon (Zfp800-202/Zfp800, exon 5 of 6)",6,28239927,28261911,21985,2,Zfp800-202,17697,Zfp800-202;Zfp800-201;Zfp800-203;Zfp800-204;Zfp800-205,Zfp800;Zfp800;Zfp800;Zfp800;Zfp800,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,10,627049,ENSMUSG00000039841,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1832,cg24799916,-0.00000245,0.00000159,-1.54072764,0.124403202,loss,ns,0.00000483,0.00000271,1.783797305,0.075434712,pos,ns,0.001664949,0.000792699,2.100355106,0.036505244,pos,ns,1.437644747,-0.000065,0.0000273,-2.385632801,0.01765002,neg,ns,0.960190905,Foxp2,Foxp2_Intergenic_downstream,6,15468232,15468281,15468232,15468233,50,+,CGGTTCTGCTCTCAGTAACGAGCCCCTCTGTCACAGAGCAGACCTTTTGA,Distal Intergenic,6,15376689,15439048,62360,1,Foxp2-206,91543,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,65,114142,ENSMUSG00000029563,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10613,cg09768315,0.0000563,0.0000413,1.36339368,0.173747789,gain,ns,0.000125115,0.0000701,1.783587299,0.075468931,pos,ns,-0.020376084,0.020551036,-0.991486955,0.322221116,neg,ns,0.491846003,0.002231834,0.000706748,3.157891022,0.00174563,pos,ns,0.197037885,Acin1,Acin1_Exon,14,54678738,54678787,54678738,54678739,50,+,CGTACTGGGCGAATGTCTGCTGAGCTCCAGCTCTGGTCTCTCCAGGCTGC,"Exon (Acin1-201/Acin1, exon 4 of 19)",14,54642161,54686931,44771,2,Acin1-201,8144,Acin1-201;Acin1-218;Acin1-203;Acin1-206;Acin1-212;Acin1-210,Acin1;Acin1;Acin1;Acin1;Acin1;Acin1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,22,56215,ENSMUSG00000022185,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16511,cg07143492,0.000000696,0.00000248,0.280954944,0.778932381,gain,ns,-0.0000075,0.00000421,-1.783304471,0.075515035,neg,ns,-0.000328414,0.001232364,-0.266491517,0.790037862,neg,ns,0.102352095,-0.00000177,0.0000424,-0.041825453,0.96666477,neg,ns,0.906513372,Sfxn5,Sfxn5_Intron,6,85252520,85252569,85252568,85252569,50,-,GAATTAATTAAGGTCTAAGCAAATTAATTACCAGTCCCCAATCGATTCCG,"Intron (Sfxn5-201/Sfxn5, intron 10 of 13)",6,85213049,85333422,120374,2,Sfxn5-201,80853,Sfxn5-201;Sfxn5-205;Sfxn5-202,Sfxn5;Sfxn5;Sfxn5,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,9,94282,ENSMUSG00000033720,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8450,cg01797675,-0.0000136,0.00000493,-2.76615783,0.006012453,loss,ns,-0.0000149,0.00000838,-1.782982794,0.0755675,neg,ns,-0.002848023,0.002455289,-1.159954064,0.246960089,neg,ns,0.607373226,-0.00005,0.0000844,-0.59181849,0.554403488,neg,ns,0.917066005,Gm12161,Gm12161_Intergenic_downstream,11,45154502,45154551,45154502,45154503,50,-,CGGCTGTTTACTGGGATTTAAAAAGAGACACAACCCAAATAAAGCTGTAA,Distal Intergenic,11,45280594,45280954,361,2,Gm12161-201,126452,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,10,382510,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21605,cg21795982,-0.00000296,0.00000165,-1.792521666,0.074024374,loss,ns,0.00000499,0.0000028,1.782935418,0.075575229,pos,ns,0.003394298,0.000820552,4.13660141,0.0000454,pos,ns,4.342499497,-0.000109797,0.0000282,-3.890913268,0.000122265,neg,ns,0.952511846,Tut4,Tut4_Exon,4,108517491,108517540,108517491,108517492,50,-,CGATTTCGGGAAATACTTGATTTAGTATGTAAAAGATGTTTTGGTAAGTC,"Exon (Tut4-201/Tut4, exon 15 of 31)",4,108459426,108559415,99990,1,Tut4-201,58065,Tut4-201;Tut4-202;Tut4-211,Tut4;Tut4;Tut4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,3,230594,ENSMUSG00000034610,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5788,cg19224584,0.00000926,0.00000344,2.688774712,0.007559353,gain,ns,-0.0000104,0.00000585,-1.782868557,0.075586139,neg,ns,-0.004262708,0.001713858,-2.487200484,0.013400935,neg,ns,1.872864896,0.0000508,0.0000589,0.862583693,0.389033201,pos,ns,0.839267868,Fam53c,Fam53c_threeUTR,18,34771162,34771211,34771162,34771163,50,+,CGGGGAATTTCACTAGCCCCTTTGCTTCAAAGGGCACTTGTGTCTTAGAA,3' UTR,18,34758906,34773760,14855,1,Fam53c-201,12256,Fam53c-201;Fam53c-202;Fam53c-203,Fam53c;Fam53c;Fam53c,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,2,66306,ENSMUSG00000034300,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26375,cg17064328,0.000035,0.00000349,10.00926104,1.28E-20,gain,yes,0.0000106,0.00000594,1.782604116,0.0756293,pos,ns,0.004845428,0.00173896,2.786394658,0.005658286,pos,ns,2.247315115,-0.0000335,0.0000598,-0.560120421,0.575801833,neg,ns,0.075980877,Nkx2-2,Nkx2-2_Exon,2,147184052,147184101,147184100,147184101,50,-,GCTGGCCGAGCTGTACTGGGCGTTGTACTGCATGTGCTGCAGCGACTGCG,"Exon (Nkx2-2os-201/Nkx2-2os-201, exon 1 of 6)",2,147177546,147186101,8556,2,Nkx2-2-203,2000,Nkx2-2-203;Nkx2-2-201;Nkx2-2-202;Nkx2-2-204,Nkx2-2;Nkx2-2;Nkx2-2;Nkx2-2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,15,30,18088,ENSMUSG00000027434,conserved gene and region,2,147184037,147184754,718,*,718,60,0.674094708,0.742310675,0.08356546,8.11E-41,CpGisland,TRUE,U3,Pr-B
9537,cg13609514,0.000000208,0.00000182,0.114613298,0.908825837,gain,ns,0.0000055,0.00000309,1.782517153,0.075643498,pos,ns,0.001119942,0.000904523,1.238158177,0.216594255,pos,ns,0.664353066,-0.0000665,0.0000311,-2.138691672,0.033241898,neg,ns,0.95887732,Grik2,Grik2_Exon,10,49240695,49240744,49240695,49240696,50,-,CGGCTAAGTTAGCAGTATACGAAGAAATGATGATAAGTGTGAAAAACCAC,"Exon (Grik2-207/Grik2, exon 14 of 17)",10,49094833,49788766,693934,2,Grik2-207,548022,Grik2-207;Grik2-203;Grik2-202;Grik2-205;Grik2-209;Grik2-204;Grik2-201;Grik2-208,Grik2;Grik2;Grik2;Grik2;Grik2;Grik2;Grik2;Grik2,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,12,14806,ENSMUSG00000056073,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25111,cg12690738,0.0000305,0.0000163,1.877446239,0.061395787,gain,ns,-0.0000492,0.0000276,-1.782355808,0.075669846,neg,ns,0.026349539,0.008094905,3.255076944,0.001258971,pos,ns,2.899984186,-0.000640512,0.000278383,-2.300829438,0.0220647,neg,ns,0.116908626,Ahdc1,Ahdc1_Intron,4,133013342,133013391,133013390,133013391,50,+,GCCTTGCTGGCCGGAGGCGGGAGCTGGGGCTGTCCCTGAGGCGGGCAGCG,"Intron (Ahdc1-210/Ahdc1, intron 2 of 3)",4,133011260,133060820,49561,1,Ahdc1-210,2082,Ahdc1-210;Ahdc1-203;Ahdc1-204;Ahdc1-205;Ahdc1-207;Ahdc1-211;Ahdc1-209;Ahdc1-206;Ahdc1-201,Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,35,49,230793,ENSMUSG00000037692,conserved gene and region,4,133013353,133013449,97,*,97,8,0.701030928,0.766798419,0.082474227,0.00000927,CpGisland,TRUE,NA,NRS
17090,cg07429125,0.0000716,0.00000671,10.67806048,7.14E-23,gain,yes,-0.0000203,0.0000114,-1.782347882,0.07567114,neg,ns,-0.005168202,0.00333769,-1.548436885,0.122537398,neg,ns,0.911731346,0.000177166,0.000114783,1.543489131,0.123732318,pos,ns,0.811346307,Msi2,Msi2_Exon,11,88348967,88349016,88348967,88348968,50,+,CGGTTGAGCACTGTAGCTATTCAGGACTGGTGTGCAGAGAATAGAGCTGG,"Exon (Msi2-201/Msi2, exon 12 of 14)",11,88339382,88718229,378848,2,Msi2-203,369213,Msi2-203;Msi2-201,Msi2;Msi2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,36,76626,ENSMUSG00000069769,conserved gene and region,11,88348768,88348968,201,*,201,21,0.696517413,0.87012987,0.104477612,9.68E-17,CpGisland,TRUE,U11,Tr-P
21620,cg08378313,-0.00000529,0.00000747,-0.708062294,0.479438605,loss,ns,0.0000226,0.0000127,1.782256012,0.075686146,pos,ns,0.006670264,0.003717941,1.794074551,0.073775628,pos,ns,1.132087088,-0.000285975,0.00012786,-2.236630433,0.026021426,neg,ns,0.826343602,Zfhx3,Zfhx3_Intron,8,108599098,108599147,108599146,108599147,50,-,CTAGTCTTGGGTTACTCATAAACATTCAGCAAAGCAATTTCACTCAATCG,"Intron (Zfhx3-204/Zfhx3, intron 4 of 15)",8,107942644,108961630,1018987,1,Zfhx3-204,656454,Zfhx3-204,Zfhx3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,114,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17393,cg20537837,-0.00000902,0.00000495,-1.822414641,0.069355377,loss,ns,0.000015,0.00000841,1.782036776,0.075721967,pos,ns,0.003911016,0.002462607,1.588160598,0.1132694,pos,ns,0.945887399,-0.0000853,0.0000847,-1.006803864,0.314814244,neg,ns,0.905156774,Ubap2l,Ubap2l_Exon,3,90020943,90020992,90020943,90020944,50,-,CGCTCGTGGTGGGGGTGGACTCATAATCAGAAAGGACAGGCTCTGACCCA,"Exon (Ubap2l-215/Ubap2l, exon 14 of 27)",3,90000140,90052455,52316,2,Ubap2l-215,31463,Ubap2l-215;Ubap2l-201;Ubap2l-202;Ubap2l-208;Ubap2l-203;Ubap2l-211;Ubap2l-204;Ubap2l-220;Ubap2l-207;Ubap2l-219;Ubap2l-205;Ubap2l-212;Ubap2l-222;Ubap2l-218;Ubap2l-210,Ubap2l;Ubap2l;Ubap2l;Ubap2l;Ubap2l;Ubap2l;Ubap2l;Ubap2l;Ubap2l;Ubap2l;Ubap2l;Ubap2l;Ubap2l;Ubap2l;Ubap2l,0;0;0;0;0;0;0;0;-4650;0;0;-3314;-2446;0;2438,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,15,74383,ENSMUSG00000042520,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13732,cg11972313,-0.0000301,0.00000665,-4.523055698,0.00000869,loss,ns,0.0000201,0.0000113,1.781643974,0.07578618,pos,ns,0.004597682,0.003308015,1.38986107,0.165568317,pos,ns,0.781022767,-0.000219063,0.000113762,-1.925617175,0.055066669,neg,ns,0.84118427,Gm4052,Gm4052_Intergenic_upstream,13,72298493,72298542,72298541,72298542,50,-,ATCACTAACCGGCAGCAATGAATTTCATTTGCAGGACAAAAAATACGGCG,Distal Intergenic,13,72350221,72350671,451,1,Gm4052-201,-51728,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,16,16,100042828,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
450,cg24682555,0.0000165,0.0000036,4.588184551,0.0000065,gain,ns,0.0000109,0.00000612,1.781610532,0.075791649,pos,ns,0.008575162,0.001793554,4.781100505,0.0000027,pos,ns,5.568933764,-0.000200585,0.0000617,-3.252023625,0.001272118,neg,ns,0.060318476,Dync1i1,Dync1i1_Exon,6,6006280,6006329,6006280,6006281,50,+,CGCTCTACTCCTTTGAAGACAATGCAGACTATGTGTACGATGTCATGTGG,"Exon (Dync1i1-203/Dync1i1, exon 15 of 17)",6,5725639,6028039,302401,1,Dync1i1-203,280641,Dync1i1-203;Dync1i1-202;Dync1i1-204;Dync1i1-201;Dync1i1-206,Dync1i1;Dync1i1;Dync1i1;Dync1i1;Dync1i1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,9,13426,ENSMUSG00000029757,conserved gene and region,6,6006221,6006480,260,*,260,19,0.615384615,0.771995624,0.073076923,3.18E-12,CpGisland,TRUE,U2,Pr-W
24724,cg13802785,-0.0000157,0.00000536,-2.9311275,0.003628459,loss,ns,-0.0000162,0.0000091,-1.781390189,0.075827691,neg,ns,-0.005159211,0.002666097,-1.935117359,0.05388527,neg,ns,1.26852994,-0.0000658,0.0000917,-0.717747989,0.473453209,neg,ns,0.902120159,Fus,Fus_Exon,7,127974352,127974401,127974400,127974401,50,-,GTAGCCGTTGGAAGCTTCATGTCCTTTCTTCTAACTTGTCTTCTCCAGCG,"Exon (Fus-203/Fus, exon 7 of 15)",7,127967457,127985701,18245,1,Fus-203,6895,Fus-203;Fus-201;Fus-208;Fus-213;Fus-206;Fus-204;Fus-205;Fus-210;Fus-211;Fus-215;Fus-207;Fus-214;Fus-216,Fus;Fus;Fus;Fus;Fus;Fus;Fus;Fus;Fus;Fus;Fus;Fus;Fus,0;0;6861;0;0;0;0;0;0;-574;-1283;-2913;-3731,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,Exon,3,3,233908,ENSMUSG00000030795,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14405,cg17801058,0.0000493,0.0000199,2.483868439,0.013524444,gain,ns,-0.0000601,0.0000337,-1.781115152,0.0758727,neg,ns,0.016995468,0.009883371,1.719602353,0.086502864,pos,ns,1.062969513,-0.001183616,0.000339888,-3.482368569,0.000568438,neg,ns,0.25510835,Tlcd2,Tlcd2_Promoter,11,75462666,75462715,75462714,75462715,50,-,AGGGTTGATGGAGCAGCTGGTCAGAGGGTCAGTGCCCTGGGCCCACCCCG,Promoter (<=1kb),11,75461715,75469663,7949,1,Tlcd2-203,951,Tlcd2-203,Tlcd2,0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,1,6,380712,ENSMUSG00000038217,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5935,cg13956769,-0.0000136,0.00000909,-1.498791131,0.134945441,loss,ns,-0.0000275,0.0000154,-1.780834812,0.075918598,neg,ns,-0.00395129,0.004526315,-0.872959551,0.383360799,neg,ns,0.416392298,0.000028,0.00015566,0.179984918,0.857282003,pos,ns,0.865386257,Pdia5,Pdia5_Exon,16,35410430,35410479,35410430,35410431,50,+,CGACAGCTGCAAGGACACCAGAGCTCTGGGATGGGGGAAAGGCCAACCAT,"Exon (Pdia5-201/Pdia5, exon 13 of 17)",16,35397312,35490873,93562,2,Pdia5-201,80394,Pdia5-201;Pdia5-204;Pdia5-202,Pdia5;Pdia5;Pdia5,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,72599,ENSMUSG00000022844,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9264,cg14360110,-0.000000788,0.00000129,-0.611526258,0.541299429,loss,ns,0.0000039,0.00000219,1.780729669,0.075935819,pos,ns,0.001611756,0.000641646,2.511907472,0.012515947,pos,ns,1.902536284,-0.000029,0.0000221,-1.312219948,0.190416721,neg,ns,0.977385869,Foxp4,Foxp4_Intron,17,47872496,47872545,47872496,47872497,50,+,CGATAATTACAAAGGGCCTAATCACGCCGGGGCTCCTGCCTCGGAATAAA,"Intron (Foxp4-204/Foxp4, intron 13 of 16)",17,47867133,47924645,57513,2,Foxp4-204,52100,Foxp4-204;Foxp4-203;Foxp4-201;Foxp4-202,Foxp4;Foxp4;Foxp4;Foxp4,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,25,74123,ENSMUSG00000023991,conserved gene and region,17,47872440,47872721,282,*,282,26,0.563829787,1.163809524,0.092198582,3.73E-19,CpGisland,TRUE,U10,Tr-S
13443,cg03138283,-0.00000107,0.00000131,-0.82093167,0.41231603,loss,ns,0.00000396,0.00000222,1.780721537,0.075937151,pos,ns,0.001032888,0.00065091,1.586836477,0.113569128,pos,ns,0.944739707,-0.0000206,0.0000224,-0.920496807,0.358028948,neg,ns,0.981592642,Sltm,Sltm_Exon,9,70583972,70584021,70583972,70583973,50,+,CGCATTAGAATAATTCGTGAACGGGAAGAACGGGAACGCTTACAGAGAGA,"Exon (Sltm-206/Sltm, exon 15 of 21)",9,70542754,70592234,49481,1,Sltm-206,41218,Sltm-206;Sltm-203;Sltm-201;Sltm-208;Sltm-204;Sltm-207,Sltm;Sltm;Sltm;Sltm;Sltm;Sltm,0;0;0;0;8564;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,11,66660,ENSMUSG00000032212,mapped to different genes,9,70583933,70584030,98,*,98,10,0.489795918,2.058823529,0.102040816,5.13E-08,CpGisland,TRUE,U10,Tr-S
4535,cg00205619,-0.000002,0.00000287,-0.697785264,0.485834528,loss,ns,0.00000868,0.00000487,1.780667743,0.075945963,pos,ns,0.003011617,0.001427661,2.109475614,0.035704976,pos,ns,1.447271258,-0.0000888,0.0000491,-1.807698511,0.071622604,neg,ns,0.931964416,Cdkal1,Cdkal1_Intron,13,29490538,29490587,29490538,29490539,50,+,CGGCACCAAGTTGATCTGAAATGCATATTTGAACAGATGTGTTTAAATTA,"Intron (Cdkal1-209/Cdkal1, intron 11 of 16)",13,29191746,29855647,663902,2,Cdkal1-209,365060,Cdkal1-209;Cdkal1-201;Cdkal1-211;Cdkal1-207,Cdkal1;Cdkal1;Cdkal1;Cdkal1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,6,68916,ENSMUSG00000006191,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21781,cg10138291,-0.00000427,0.00000189,-2.25750951,0.024671807,loss,ns,0.00000572,0.00000322,1.780289049,0.076008019,pos,ns,0.001601556,0.000941907,1.700332898,0.09007126,pos,ns,1.045413762,-0.0000654,0.0000324,-2.017779482,0.044475503,neg,ns,0.952312252,Gm1943,Gm1943_Intron,8,109124127,109124176,109124175,109124176,50,+,TGATCCATGAAAGCTAATTGAAACAATTTCTCTTCAAGTTTTGGCAAGCG,"Intron (D030068K23Rik-202/D030068K23Rik-202, intron 2 of 9)",8,109340691,109340864,174,2,Gm1943-201,216688,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,28,384864,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14326,cg26032884,0.0000661,0.0000118,5.624967949,4.15E-08,gain,yes,-0.0000355,0.00002,-1.780060727,0.076045454,neg,ns,0.014125061,0.005850012,2.414535363,0.016334122,pos,ns,1.786904197,-0.00107222,0.000201181,-5.329618207,0.00000019,neg,yes,0.20340158,Hic1,Hic1_Exon,11,75165509,75165558,75165557,75165558,50,-,GAGGCTCTCCAGCGCCACCTTGGGGTCGTGCAGGAAGTGCGTGGTCTGCG,"Exon (Hic1-201/Hic1, exon 2 of 2)",11,75164565,75169519,4955,2,Hic1-201,3961,Hic1-201;Hic1-202;Smg6-201;Smg6-202;Smg6-206,Hic1;Hic1;Smg6;Smg6;Smg6,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,10,15248,ENSMUSG00000043099,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
3521,cg27240119,0.0000055,0.00000534,1.029556431,0.304020883,gain,ns,-0.0000162,0.00000908,-1.77993016,0.076066868,neg,ns,-0.006170912,0.002659094,-2.320682079,0.020952649,neg,ns,1.678761056,-0.0000386,0.0000914,-0.422235691,0.673145681,neg,ns,0.865353164,Gm12067,Gm12067_Intergenic_downstream,11,24350088,24350137,24350136,24350137,50,+,TCCTGAAATAAATCTCTTTCAAGCCCGCATGCCAGCAGTTCTGGGATCCG,Distal Intergenic,11,24552438,24553962,1525,2,Gm12067-201,203825,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,58,100417843,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5968,cg18508143,0.00000957,0.00000579,1.651586751,0.09963138,gain,ns,0.0000175,0.00000984,1.779867632,0.076077125,pos,ns,-0.008741057,0.002882935,-3.031999898,0.002634451,neg,ns,2.57930994,0.000132289,0.0000991,1.3343111,0.183081217,pos,ns,0.870592591,Slit3,Slit3_Exon,11,35616868,35616917,35616868,35616869,50,+,CGATGGAAACGGAACATGGTTCTGTCAAGCACCGCGGAAAGCACCGTGCT,"Exon (Mir218-2-201/Mir218-2-201, exon 1 of 1)",11,35121224,35708507,587284,1,Slit3-201,495644,Slit3-201;Slit3-202,Slit3;Slit3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,21,20564,ENSMUSG00000056427,mapped to different genes,11,35616700,35617001,302,*,302,18,0.602649007,0.686363636,0.059602649,4.00E-10,CpGisland,TRUE,U15,NS
10285,cg07731506,0.00000148,0.00000346,0.429514726,0.667847053,gain,ns,-0.0000105,0.00000587,-1.779410362,0.076152169,neg,ns,0.008042159,0.001720588,4.674076298,0.00000441,pos,ns,5.355529545,-0.000211824,0.0000592,-3.579862715,0.00039888,neg,ns,0.925849311,Arhgap5,Arhgap5_Exon,12,52516374,52516423,52516374,52516375,50,+,CGCTCAAAAGCAGATGAATATTATCCAGAGCATACTTCTGTGCTTAGCAC,"Exon (Arhgap5-204/Arhgap5, exon 2 of 7)",12,52503972,52545639,41668,1,Arhgap5-203,12402,Arhgap5-203;Arhgap5-204;Arhgap5-202;Arhgap5-201,Arhgap5;Arhgap5;Arhgap5;Arhgap5,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,11855,ENSMUSG00000035133,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18395,cg18304195,0.00000182,0.00000198,0.919853392,0.358364589,gain,ns,-0.000006,0.00000337,-1.779298561,0.076170526,neg,ns,-0.001330206,0.000987192,-1.347463597,0.178814966,neg,ns,0.747596136,0.00000826,0.0000339,0.243316014,0.807921526,pos,ns,0.049684144,Kbtbd8,Kbtbd8_Exon,6,95118656,95118705,95118704,95118705,50,+,CATTGTAGTGGAAGTGGATCACGGGAAAACATTTTCCTGTCATAGAAACG,"Exon (Kbtbd8-203/Kbtbd8, exon 2 of 3)",6,95117240,95121890,4651,1,Kbtbd8-203,1416,Kbtbd8-203;Kbtbd8-201;Kbtbd8-202;Kbtbd8-204,Kbtbd8;Kbtbd8;Kbtbd8;Kbtbd8,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,243574,ENSMUSG00000030031,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7686,cg07803316,0.00000875,0.00000371,2.358380638,0.018975399,gain,ns,0.0000112,0.0000063,1.779291567,0.076171674,pos,ns,-0.000976433,0.001845536,-0.529078387,0.597129704,neg,ns,0.223931325,0.000034,0.0000635,0.536121196,0.592259264,pos,ns,0.832093975,Npr2,Npr2_Exon,4,43643349,43643398,43643397,43643398,50,+,CGGCTCGCTCATGACAGCCCATGGGAAATACCAGATCTTTGCCAACACCG,"Exon (Npr2-201/Npr2, exon 9 of 22)",4,43631935,43651244,19310,1,Npr2-201,11414,Npr2-201;Npr2-202;Npr2-204;Npr2-208;Npr2-203;Npr2-205;Npr2-209;Npr2-206;Npr2-207;Npr2-210,Npr2;Npr2;Npr2;Npr2;Npr2;Npr2;Npr2;Npr2;Npr2;Npr2,0;0;0;2094;0;0;0;0;-3799;-4607,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,10,230103,ENSMUSG00000028469,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25314,cg00045149,0.000249053,0.0000218,11.44449746,1.56E-25,gain,yes,-0.0000658,0.000037,-1.77929024,0.076171892,neg,ns,0.022962813,0.010831076,2.120086027,0.034792944,pos,ns,1.458508828,-0.00082505,0.00037248,-2.215018644,0.027485507,neg,ns,0.11084565,Plcb1,Plcb1_Exon,2,134786559,134786608,134786559,134786560,50,-,CGCCTTGCAACTCAAGCCCGTGTGCGTGTCCGACAGCCTCAAGAAGGGCA,Promoter (<=1kb),2,134786067,135475247,689181,1,Plcb1-205,492,Plcb1-205;Plcb1-202;Plcb1-204;Plcb1-208;Plcb1-201,Plcb1;Plcb1;Plcb1;Plcb1;Plcb1,0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,18795,ENSMUSG00000051177,conserved gene and region,2,134785945,134786751,807,*,807,87,0.721189591,0.845891566,0.107806691,3.93E-69,CpGisland,TRUE,U1,Pr-A
9655,cg16319943,-0.00000328,0.00000284,-1.154881915,0.249028222,loss,ns,-0.00000859,0.00000483,-1.779256091,0.0761775,neg,ns,-0.00073156,0.001414736,-0.517099858,0.605455192,neg,ns,0.217917992,0.00000272,0.0000487,0.055979191,0.955394446,pos,ns,0.937930186,Cnot6,Cnot6_Exon,11,49702586,49702635,49702634,49702635,50,-,CTTCCTCAGAAGACATAATTGTATACATCCTCCGAGGGTCAGGGGGCTCG,Promoter (<=1kb),11,49674698,49702632,27935,2,Cnot6-202,0,Cnot6-203;Cnot6-202;Cnot6-201;Gm12192-201,Cnot6;Cnot6;Cnot6;Gm12192,0;0;0;4706,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,5,104625,ENSMUSG00000020362,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10692,cg03701585,0.00000519,0.00000902,0.575931488,0.565079354,gain,ns,0.0000273,0.0000153,1.779229132,0.076181928,pos,ns,0.004777758,0.004488542,1.064434151,0.287960462,pos,ns,0.540667138,-0.000252234,0.000154361,-1.634056338,0.103262118,neg,ns,0.608868874,Unc5a,Unc5a_Intron,13,54987506,54987555,54987506,54987507,50,-,CGTGACAGAGGCCCTGGAGAAGTGAGCTATGCCCCTTATTGGTCACAGTA,"Intron (Unc5a-201/Unc5a, intron 1 of 15)",13,54949411,55006018,56608,1,Unc5a-201,38095,Unc5a-201;Unc5a-202,Unc5a;Unc5a,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,12,107448,ENSMUSG00000025876,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3709,cg06647310,-0.0000274,0.00000645,-4.24788754,0.0000286,loss,ns,0.0000195,0.000011,1.779225681,0.076182494,pos,ns,-0.003145858,0.003209558,-0.980152884,0.327774959,neg,ns,0.484424229,0.0000374,0.000110376,0.338967274,0.734863877,pos,ns,0.879226262,Adgrb3,Adgrb3_Exon,1,25112181,25112230,25112181,25112182,50,-,CGTTACTGGCGGTGGTGGCTGACAAAGCTGTTGTTGAAACTACTCCACAC,"Exon (Adgrb3-203/Adgrb3, exon 9 of 16)",1,25067476,25228826,161351,2,Adgrb3-203,116596,Adgrb3-203;Adgrb3-206;Adgrb3-205;Adgrb3-207;Adgrb3-201;Adgrb3-208;Adgrb3-202,Adgrb3;Adgrb3;Adgrb3;Adgrb3;Adgrb3;Adgrb3;Adgrb3,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,25,210933,ENSMUSG00000033569,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11840,cg03168831,-0.00000556,0.00000453,-1.229086135,0.219971643,loss,ns,0.0000137,0.00000769,1.779027685,0.076215017,pos,ns,0.006153476,0.002252574,2.731753321,0.006660882,pos,ns,2.176468261,-0.000187224,0.0000775,-2.416864781,0.016231939,neg,ns,0.924643392,Uaca,Uaca_Exon,9,61103274,61103323,61103322,61103323,50,+,ATTTAAATAAGCAATATTTGTGGAATAATTTGACTTCCATTCTGGGCTCG,"Exon (4933433G08Rik-201/4933433G08Rik-201, exon 2 of 2)",9,60866145,60870130,3986,1,Uaca-204,237129,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,7,72565,ENSMUSG00000034485,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23261,cg08898402,0.000024,0.00000564,4.260376689,0.0000271,gain,ns,-0.000017,0.00000958,-1.778777759,0.076256087,neg,ns,0.02051448,0.002807151,7.307936345,2.32E-12,pos,yes,11.63512627,-0.000275017,0.0000965,-2.848807742,0.004681851,neg,ns,0.88943296,Eri3,Eri3_Intron,4,117634404,117634453,117634404,117634405,50,-,CGTCCTGTCAATAGAAGAGACTGAGATGTATCACGCCAAGAGGGGGGCAG,"Intron (Eri3-201/Eri3, intron 7 of 8)",4,117550365,117674297,123933,1,Eri3-201,84039,Eri3-201;Eri3-206;Eri3-203,Eri3;Eri3;Eri3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,82,97,140546,ENSMUSG00000033423,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6308,cg05602886,-0.00000112,0.00000592,-0.190039057,0.849402904,loss,ns,0.0000179,0.0000101,1.778777271,0.076256167,pos,ns,0.000711309,0.002945385,0.241499634,0.809327563,pos,ns,0.091875669,-0.000100642,0.000101292,-0.993590046,0.321197401,neg,ns,0.827412082,Gm18026,Gm18026_Intergenic_downstream,12,36793852,36793901,36793900,36793901,50,-,AAACACCCTGCAGCATTACCAGCCCAACATATGCTGAATGTATATCACCG,Distal Intergenic,12,36968424,36969150,727,2,Gm18026-201,175298,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,100416308,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4731,cg13291440,0.000000584,0.0000026,0.224220962,0.822733079,gain,ns,-0.00000787,0.00000442,-1.778594877,0.076286151,neg,ns,-0.002343248,0.001295509,-1.808747121,0.071459056,neg,ns,1.145942724,0.000077,0.0000446,1.728880516,0.084826078,pos,ns,0.917925276,Sh3glb2,Sh3glb2_Exon,2,30348563,30348612,30348563,30348564,50,-,CGCTGGCCGAGAGAATGTAATTACGAGGTCTAGTCTCCTGAAAGTCAGGC,"Exon (Sh3glb2-202/Sh3glb2, exon 6 of 12)",2,30344809,30359240,14432,2,Sh3glb2-202,10628,Nup188-201;Nup188-203;Sh3glb2-202;Sh3glb2-201;Sh3glb2-203;Sh3glb2-214;Sh3glb2-204;Sh3glb2-213;Sh3glb2-209;Sh3glb2-205;Sh3glb2-211;Sh3glb2-210;Sh3glb2-207;Sh3glb2-208;Sh3glb2-212;Sh3glb2-206,Nup188;Nup188;Sh3glb2;Sh3glb2;Sh3glb2;Sh3glb2;Sh3glb2;Sh3glb2;Sh3glb2;Sh3glb2;Sh3glb2;Sh3glb2;Sh3glb2;Sh3glb2;Sh3glb2;Sh3glb2,62166;5623;0;0;0;0;0;0;-2462;0;-907;-976;0;0;10633;10648,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,227700,ENSMUSG00000026860,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16802,cg13163842,0.0000228,0.00000692,3.294010772,0.001102023,gain,ns,0.0000209,0.0000118,1.77851753,0.076298869,pos,ns,0.017471467,0.003442685,5.074952988,0.000000669,pos,ns,6.174355079,-0.000432968,0.000118394,-3.657016414,0.000299695,neg,ns,0.180601024,Lrba,Lrba_Exon,3,86547636,86547685,86547636,86547637,50,+,CGCTCAGTGTAGTACTTATTGAGCTGGTAAACCAGCTTGGCCTGAGCGGC,"Exon (Lrba-205/Lrba, exon 1 of 5)",3,86224680,86746712,522033,1,Lrba-202,322956,Lrba-202;Lrba-204;Lrba-201;Lrba-208;Lrba-203;Lrba-205;Lrba-206;Mab21l2-201;Mab21l2-202,Lrba;Lrba;Lrba;Lrba;Lrba;Lrba;Lrba;Mab21l2;Mab21l2,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,17,45,80877,ENSMUSG00000028080,mapped to different genes,3,86547469,86547641,173,*,173,15,0.606936416,0.951944241,0.086705202,7.95E-11,CpGisland,TRUE,U3,Pr-B
9040,cg23145858,-0.00000715,0.00000253,-2.82692237,0.005005275,loss,ns,0.00000764,0.0000043,1.778403589,0.076317607,pos,ns,0.001955895,0.001258369,1.554309684,0.121130853,pos,ns,0.916745225,-0.000116108,0.0000433,-2.683024927,0.007687493,neg,ns,0.942723508,Nova1,Nova1_threeUTR,12,46697884,46697933,46697884,46697885,50,+,CGGGAGACAAGTGATGCTACATGATGAACTAAGCACATTTATAATGATAA,3' UTR,12,46694517,46818929,124413,2,Nova1-201,120996,Nova1-201;Nova1-204,Nova1;Nova1,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,10,24,664883,ENSMUSG00000021047,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1467,cg13285181,0.0000191,0.00000766,2.496351556,0.01306687,gain,ns,-0.0000231,0.000013,-1.778380246,0.076321446,neg,ns,0.010816576,0.003810112,2.838913058,0.004825645,pos,ns,2.316444615,-0.00031278,0.000131029,-2.387096962,0.017581179,neg,ns,0.701537691,Plagl1,Plagl1_Intron,10,13108429,13108478,13108429,13108430,50,-,CGGGAGTTTCTCATGCTTACATTAGAATTACTCAAGTTTGGGGCTAGTGT,"Intron (Plagl1-225/Plagl1, intron 3 of 7)",10,13060504,13127354,66851,1,Plagl1-225,47925,Plagl1-225;Plagl1-204;Plagl1-213;Plagl1-205;Plagl1-202;Plagl1-207;Plagl1-224;Plagl1-212;Plagl1-209;Plagl1-221;Plagl1-217;Plagl1-223;Plagl1-216;Plagl1-215;Plagl1-218;Plagl1-214;Plagl1-206;Plagl1-201;Plagl1-203;Plagl1-210;Plagl1-219;Plagl1-211;Plagl1-220;Plagl1-208,Plagl1;Plagl1;Plagl1;Plagl1;Plagl1;Plagl1;Plagl1;Plagl1;Plagl1;Plagl1;Plagl1;Plagl1;Plagl1;Plagl1;Plagl1;Plagl1;Plagl1;Plagl1;Plagl1;Plagl1;Plagl1;Plagl1;Plagl1;Plagl1,0;0;0;0;0;17597;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;-4987,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,22634,ENSMUSG00000019817,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24704,cg02673624,0.000363071,0.0000261,13.90974261,1.64E-34,gain,yes,-0.0000789,0.0000443,-1.778357137,0.076325247,neg,ns,0.025777455,0.012991187,1.984226293,0.048112175,pos,ns,1.317745011,-0.001311109,0.000446766,-2.934666824,0.003588452,neg,ns,0.503802572,Alpk1,Alpk1_Intron,3,127745986,127746035,127746034,127746035,50,+,TACAACTACAGTGTGTGTAAATTGCAGGGGGCTCATTGGCATAAATCTCG,"Intron (Alpk1-201/Alpk1, intron 1 of 13)",3,127670310,127780527,110218,2,Alpk1-201,34492,Alpk1-201;Alpk1-203;Alpk1-204,Alpk1;Alpk1;Alpk1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,4,71481,ENSMUSG00000028028,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
801,cg18909320,-0.000000216,0.00000218,-0.099069763,0.921146911,loss,ns,-0.00000659,0.00000371,-1.77788109,0.076403582,neg,ns,-0.000303351,0.001085956,-0.279339967,0.780170211,neg,ns,0.107810636,0.0000165,0.0000373,0.441179971,0.65939025,pos,ns,0.929946619,Nxf1,Nxf1_threeUTR,19,8765848,8765897,8765848,8765849,50,-,CGGGTAAGATTCCTCAGGGAAGGAACAACCTAAGACAGGCACAGTCGCAG,3' UTR,19,8757073,8770922,13850,1,Nxf1-201,8775,Nxf1-201;Nxf1-209;Nxf1-202;Nxf1-206;Nxf1-204;Nxf1-210;Nxf1-205;Nxf1-208;Nxf1-203;Nxf1-207,Nxf1;Nxf1;Nxf1;Nxf1;Nxf1;Nxf1;Nxf1;Nxf1;Nxf1;Nxf1,0;0;0;8698;8698;-780;-1114;-2738;-4195;-4239,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,1,53319,ENSMUSG00000010097,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21540,cg17284641,-0.0000404,0.00000962,-4.194387671,0.0000358,loss,ns,-0.0000291,0.0000164,-1.77781041,0.076415218,neg,ns,0.000670276,0.004790034,0.139931318,0.888805128,pos,ns,0.051193449,-0.0000338,0.000164729,-0.205445756,0.837358716,neg,ns,0.195458274,Gpr61,Gpr61_Exon,3,108166692,108166741,108166692,108166693,50,-,CGGCATTGATCGTCCCTGAGCTCATTATGTCACAGCTGGGGAACAGCTGG,"Exon (Gm12524-201/Gm12524-201, exon 1 of 2)",3,108148321,108154882,6562,2,Gpr61-201,-11859,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,4,229714,ENSMUSG00000046793,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27921,cg05927178,0.0000982,0.00000934,10.51051886,2.66E-22,gain,yes,-0.0000282,0.0000159,-1.777585028,0.076452334,neg,ns,0.002955613,0.00464891,0.635764863,0.525398748,pos,ns,0.279510967,0.0000434,0.000159876,0.271755764,0.785990713,pos,ns,0.712317969,Prox1,Prox1_Intergenic_upstream,1,190366696,190366745,190366696,190366697,50,-,CGAGGCGTTCAGAGCCTGCAGGAATGTCAAAACTCCAACCTGCATTTTGA,Distal Intergenic,1,190118035,190170714,52680,2,Prox1-202,-196031,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,13,59,19130,ENSMUSG00000010175,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18445,cg12737311,-0.0000276,0.00000752,-3.667425602,0.000288247,loss,ns,-0.0000227,0.0000128,-1.777523104,0.076462534,neg,ns,-0.005684864,0.003740472,-1.519825053,0.129574192,neg,ns,0.887481491,0.000195014,0.000128635,1.516035301,0.13052943,pos,ns,0.834410519,Trpc1,Trpc1_Exon,9,95743193,95743242,95743241,95743242,50,-,GTACCTGACAACCGTAGTCCAAAAGAAGCTGCAGTATATCCAAGTTTTCG,"Exon (Trpc1-204/Trpc1, exon 2 of 13)",9,95705082,95750358,45277,2,Trpc1-204,7116,Trpc1-204;Trpc1-201;Trpc1-206;Trpc1-207,Trpc1;Trpc1;Trpc1;Trpc1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,5,22063,ENSMUSG00000032839,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21857,cg09895575,0.000024,0.0000126,1.909196621,0.0571598,gain,ns,0.000038,0.0000214,1.777520956,0.076462887,pos,ns,0.007877008,0.006266424,1.257018111,0.209693332,pos,ns,0.67841538,-0.000116774,0.000215502,-0.541872203,0.588295805,neg,ns,0.408333816,Lmo1,Lmo1_Intergenic_upstream,7,109255934,109255983,109255982,109255983,50,+,GGGCCCAGGAGTGCGAGCTGTCAGCTCCGTGATGGGGCTGGAGCTGGTCG,Distal Intergenic,7,109138675,109175207,36533,2,Lmo1-202,-80727,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,34,66,109594,ENSMUSG00000036111,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18111,cg24186396,-0.000021,0.00000724,-2.896784668,0.004038364,loss,ns,0.0000219,0.0000123,1.777513931,0.076464045,pos,ns,-0.002957235,0.003604561,-0.820414676,0.412610142,neg,ns,0.384460101,0.000146705,0.000123961,1.183478185,0.23752643,pos,ns,0.755022003,Magi1,Magi1_fiveUTR,6,93912862,93912911,93912910,93912911,50,+,ATTTAGCTGCCCGATTCCAACCTGCAATGCGGAGGAGGCAATACAAAGCG,5' UTR,6,93675455,94283322,607868,2,Magi1-201,370411,Magi1-201;Magi1-202;Magi1-208;Magi1-203;Magi1-206;Magi1-209;Magi1-205;Magi1-211;Magi1-207,Magi1;Magi1;Magi1;Magi1;Magi1;Magi1;Magi1;Magi1;Magi1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,8,18,14924,ENSMUSG00000045095,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25154,cg26440629,0.00000877,0.0000116,0.758742953,0.448582826,gain,ns,-0.0000349,0.0000196,-1.777277698,0.076502967,neg,ns,0.053743547,0.005751023,9.345040717,1.87E-18,pos,yes,17.72726708,-0.000454275,0.000197777,-2.296900178,0.022290815,neg,ns,0.704300441,Ppp1r15b,Ppp1r15b_Exon,1,133136714,133136763,133136714,133136715,50,-,CGCAAAGGACCATGGGAAGAATTTGCAAGGGATGGATGCAGGTTCCAGAA,"Exon (Ppp1r15b-201/Ppp1r15b, exon 2 of 2)",1,133131143,133139783,8641,1,Ppp1r15b-201,5571,Ppp1r15b-201;Ppp1r15b-202,Ppp1r15b;Ppp1r15b,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,108954,ENSMUSG00000046062,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8706,cg24830738,0.0000504,0.00000608,8.301402423,3.22E-15,gain,yes,-0.0000183,0.0000103,-1.776954219,0.076556291,neg,ns,0.005043791,0.003024652,1.667560859,0.096412749,pos,ns,1.015865533,-0.000196581,0.000104018,-1.889887611,0.059705782,neg,ns,0.057320133,Gm31907,Gm31907_fiveUTR,18,45560126,45560175,45560126,45560127,50,-,CGAGAGCAACCCCTTCACCGAAATAGCCATGAGCAGCTGCAGGTACAACG,Promoter (<=1kb),18,45501590,45560130,58541,2,Gm31907-202,0,Gm31907-202;Kcnn2-205;Kcnn2-201;Kcnn2-207;Kcnn2-206;Kcnn2-202;Kcnn2-208;Kcnn2-203,Gm31907;Kcnn2;Kcnn2;Kcnn2;Kcnn2;Kcnn2;Kcnn2;Kcnn2,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,15,15,102634286,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
24666,cg00084577,0.00000182,0.00000494,0.368611511,0.712668918,gain,ns,-0.0000149,0.00000839,-1.776870267,0.076570135,neg,ns,-0.005382831,0.002458916,-2.189107489,0.029334511,neg,ns,1.532621154,-0.00002,0.0000846,-0.236516767,0.813187901,neg,ns,0.832308787,Gm42715,Gm42715_Exon,7,127525598,127525647,127525598,127525599,50,+,CGTGGACTTTGTGACCTTGTTCTCCTGCTATAGATGGGGACTTTCAACCC,"Exon (Srcap-203/Srcap, exon 8 of 8)",7,127519584,127567054,47471,1,Gm42715-201,6014,Gm42715-201;Srcap-203;Srcap-210;Srcap-211;Srcap-202;Srcap-204;Srcap-201;Srcap-208;Srcap-207;Srcap-206;Srcap-214,Gm42715;Srcap;Srcap;Srcap;Srcap;Srcap;Srcap;Srcap;Srcap;Srcap;Srcap,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,7,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22317,cg00860838,0.000134876,0.00000974,13.85141275,2.71E-34,gain,yes,-0.0000294,0.0000165,-1.776572357,0.076619279,neg,ns,0.015087103,0.004846372,3.113071609,0.002024182,pos,ns,2.693750373,-0.000130647,0.000166666,-0.783880702,0.433708633,neg,ns,0.137858112,Lhfpl4,Lhfpl4_Exon,6,113194117,113194166,113194165,113194166,50,+,ATGATGGCGAAGCAGATGGTGAAGATGGCCCACAGCACGCCGATGGCCCG,"Exon (Lhfpl4-201/Lhfpl4, exon 2 of 4)",6,113168090,113195384,27295,2,Lhfpl4-201,1218,Lhfpl4-201;Lhfpl4-202,Lhfpl4;Lhfpl4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,7,269788,ENSMUSG00000042873,conserved gene and region,6,113193884,113194365,482,*,482,42,0.668049793,0.8053467,0.08713693,1.49E-29,CpGisland,TRUE,U13,Hc-P
10263,cg13078884,0.0000971,0.00000937,10.36100748,8.52E-22,gain,yes,-0.0000283,0.0000159,-1.776563413,0.076620754,neg,ns,0.005583069,0.00466221,1.197515581,0.232020513,pos,ns,0.634473618,0.000430318,0.000160333,2.683904526,0.007667764,pos,ns,0.295946575,Evx1,Evx1_fiveUTR,6,52313615,52313664,52313663,52313664,50,-,AGGGCAATGGGGCTTCCTCCCAGAGGCGGTGCGGCACAGAGGAGCGCTCG,Promoter (<=1kb),6,52313498,52318378,4881,1,Evx1-201,117,Evx1-201;Evx1-202,Evx1;Evx1,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,7,19,14028,ENSMUSG00000005503,mapped to different genes,6,52313641,52313750,110,*,110,14,0.709090909,1.023255814,0.127272727,1.54E-12,CpGisland,TRUE,U13,Hc-P
21411,cg02777307,-0.0000636,0.0000173,-3.674723923,0.000280467,loss,ns,-0.0000522,0.0000294,-1.776315646,0.076661647,neg,ns,0.008381066,0.008613595,0.973004395,0.331309722,pos,ns,0.47976582,-0.001042946,0.000296221,-3.520840735,0.000494748,neg,ns,0.486984248,Sema3f,Sema3f_Intergenic_upstream,9,107723952,107724001,107723952,107723953,50,-,CGCCAGCTCCCTGAAGCAGGAAATTGCATTCTGCCAAGATTAAATGGGCT,Distal Intergenic,9,107681500,107710475,28976,2,Sema3f-201,-13526,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,6,20350,ENSMUSG00000034684,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6256,cg07881776,0.0000913,0.0000158,5.787750177,1.75E-08,gain,yes,-0.0000476,0.0000268,-1.776246111,0.076673126,neg,ns,0.05820918,0.00784939,7.415758082,1.16E-12,pos,yes,11.93375318,-0.00154741,0.00026994,-5.73242312,2.35E-08,neg,yes,0.779373041,Ankhd1,Ankhd1_Exon,18,36625194,36625243,36625242,36625243,50,+,TCAAGAACCAGATGGACTAATGGTTGCAACTCCAGCTCAGACGCTTACCG,"Exon (Ankhd1-201/Ankhd1, exon 15 of 34)",18,36560611,36658908,98298,1,Ankhd1-201,64583,Ankhd1-201;Ankhd1-212;Ankhd1-209;Ankhd1-207;Ankhd1-206;Ankhd1-213,Ankhd1;Ankhd1;Ankhd1;Ankhd1;Ankhd1;Ankhd1,0;0;24394;0;0;10882,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,6,108857,ENSMUSG00000024483,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27306,cg07844624,-0.00000105,0.00000548,-0.191046266,0.848614406,loss,ns,-0.0000165,0.00000931,-1.77614883,0.076689188,neg,ns,-0.007163802,0.00272631,-2.627655279,0.009025277,neg,ns,2.04453946,0.00023519,0.0000938,2.508492579,0.012635085,pos,ns,0.887418095,Rpsa-ps1,Rpsa-ps1_Intergenic_upstream,1,163574920,163574969,163574968,163574969,50,-,TTGGAGTGTTTGATATTTTCCACTCTGCGTGTCAAGGGCATTTACAGTCG,Distal Intergenic,1,163623793,163624678,886,1,Rpsa-ps1-201,-48873,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,4,665237,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
480,cg18909565,-0.00000799,0.00000474,-1.685334435,0.092930357,loss,ns,0.0000143,0.00000806,1.776112279,0.076695224,pos,ns,0.005358577,0.002360454,2.270146242,0.023884919,pos,ns,1.62187622,-0.000183208,0.0000812,-2.256930122,0.024708421,neg,ns,0.9105536,Usp6nl,Usp6nl_Exon,2,6427567,6427616,6427615,6427616,50,+,TACACAAGTTTTTACACAATGAAATGGTTTTTTCAGTGTTTCCTTGATCG,"Exon (Usp6nl-202/Usp6nl, exon 12 of 15)",2,6322667,6446390,123724,1,Usp6nl-202,104900,Usp6nl-202;Usp6nl-201;Usp6nl-204,Usp6nl;Usp6nl;Usp6nl,0;0;6645,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,98910,ENSMUSG00000039046,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1366,cg26976071,0.0000179,0.00000658,2.716761128,0.006962708,gain,ns,-0.0000198,0.0000112,-1.775983265,0.076716532,neg,ns,-0.003811182,0.00327294,-1.164451974,0.245136238,neg,ns,0.610592483,0.000106271,0.000112556,0.944157376,0.3458245,pos,ns,0.664280344,Pdzd2,Pdzd2_Exon,15,12445560,12445609,12445560,12445561,50,+,CGATAGCGTGAGGTGAGCGCTTTGATCCTCGGCCTCCACTAACCTGAATT,"Exon (Pdzd2-201/Pdzd2, exon 3 of 24)",15,12359711,12592556,232846,2,Pdzd2-201,146947,Pdzd2-201;Pdzd2-208;Pdzd2-206,Pdzd2;Pdzd2;Pdzd2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,5,68070,ENSMUSG00000022197,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21749,cg16630989,0.00000229,0.00000766,0.298563739,0.765472966,gain,ns,-0.0000231,0.000013,-1.775942865,0.076723205,neg,ns,-0.005065937,0.003811428,-1.329144264,0.184777754,neg,ns,0.733350316,-0.0000905,0.000131075,-0.690651926,0.490301099,neg,ns,0.885772198,Zfhx3,Zfhx3_Exon,8,108956598,108956647,108956598,108956599,50,-,CGCGCTCTGTGGGGAGGAAGCTCTGAGTCAACATCTCGAGTCGGCCTTGC,"Exon (Zfhx3-204/Zfhx3, exon 16 of 16)",8,107942644,108961630,1018987,1,Zfhx3-204,1013954,Zfhx3-204;Zfhx3-201,Zfhx3;Zfhx3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,46,177,11906,ENSMUSG00000038872,conserved gene and region,8,108956520,108956683,164,*,164,19,0.670731707,1.073002755,0.115853659,4.34E-16,CpGisland,TRUE,U10,Tr-S
27863,cg18595456,-0.00000303,0.00000338,-0.897289453,0.370260795,loss,ns,0.0000102,0.00000574,1.775871809,0.076734943,pos,ns,-0.002020789,0.001682977,-1.200723013,0.230775336,neg,ns,0.636810609,0.000104179,0.0000579,1.799992113,0.072834017,pos,ns,0.937144575,Ush2a,Ush2a_Intron,1,188727314,188727363,188727314,188727315,50,-,CGCATGGTGAAATTATTTACAATTAAGGAATTTCTCTGGAGGGCTGCAGA,"Intron (Ush2a-201/Ush2a, intron 39 of 70)",1,188263034,188965041,702008,1,Ush2a-201,464280,Ush2a-201,Ush2a,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,33,36,22283,ENSMUSG00000026609,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17621,cg06433155,-0.0000055,0.00000424,-1.29836864,0.195125755,loss,ns,-0.0000128,0.0000072,-1.775729972,0.076758379,neg,ns,-0.001900654,0.002108948,-0.901232941,0.368164113,neg,ns,0.433958547,-0.0000385,0.0000725,-0.530420194,0.596200369,neg,ns,0.926539705,Olig1,Olig1_Intron,16,91292956,91293005,91292956,91292957,50,-,CGGGGATTAATAGTAAAGTGTGAATACCAAGCTGTATATGTTAGGGGCAG,"Intron (Gm15966-209/Gm15966-209, intron 1 of 2)",16,91269772,91271933,2162,1,Olig1-201,23233,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,9,50914,ENSMUSG00000046160,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26127,cg21595475,-0.00000574,0.0000031,-1.849933095,0.065274718,loss,ns,0.00000936,0.00000527,1.775658147,0.076770248,pos,ns,0.004470136,0.001544987,2.893316969,0.004082019,pos,ns,2.389124999,-0.000118134,0.0000531,-2.223399681,0.026909471,neg,ns,0.932585964,Lmo4,Lmo4_Intron,3,144126472,144126521,144126520,144126521,50,-,ATTACCAACCTCTGCTTGATAAAACTATTAGCGATTTAGCTAATTGGACG,"Intron (Gm34078-201/Gm34078-201, intron 3 of 4)",3,144189062,144194818,5757,2,Lmo4-206,68346,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,54,16911,ENSMUSG00000028266,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13382,cg22283959,0.000122894,0.0000143,8.613618606,3.66E-16,gain,yes,-0.000043,0.0000242,-1.775538299,0.076790058,neg,ns,-0.01765365,0.007101018,-2.486073131,0.01344261,neg,ns,1.871516394,0.000893387,0.000244203,3.658372686,0.00029818,pos,ns,0.65859184,Nr2f2,Nr2f2_Exon,7,70354725,70354774,70354725,70354726,50,-,CGATGGGGGTTTTACCTACCAAACGGACGAAAAACAATTGCTCTATGACT,"Exon (Nr2f2-201/Nr2f2, exon 3 of 3)",7,70351944,70360593,8650,2,Nr2f2-201,5819,Nr2f2-201;Nr2f2-203;Nr2f2-202;Nr2f2-205;Nr2f2-204;Nr2f2-206,Nr2f2;Nr2f2;Nr2f2;Nr2f2;Nr2f2;Nr2f2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,24,69,11819,ENSMUSG00000030551,conserved gene and region,7,70354695,70354858,164,*,164,11,0.536585366,0.993939394,0.067073171,0.000000682,CpGisland,TRUE,NA,NRS
25112,cg17931125,0.0000101,0.0000121,0.835052089,0.404331466,gain,ns,-0.0000366,0.0000206,-1.775497818,0.07679675,neg,ns,0.014123567,0.006042573,2.337343188,0.020057566,pos,ns,1.697721766,-0.000229303,0.000207804,-1.103462418,0.270682238,neg,ns,0.170807343,Ahdc1,Ahdc1_Intron,4,133013555,133013604,133013555,133013556,50,+,CGGTTCTGCACCAGTGCCTGACTGGCAGGGCCAGCTGAATTTGGGCCCAG,"Intron (Ahdc1-210/Ahdc1, intron 2 of 3)",4,133011260,133060820,49561,1,Ahdc1-210,2295,Ahdc1-210;Ahdc1-203;Ahdc1-204;Ahdc1-205;Ahdc1-207;Ahdc1-211;Ahdc1-209;Ahdc1-206;Ahdc1-201,Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,35,49,230793,ENSMUSG00000037692,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U4,Pr-F
6189,cg11450926,0.00000174,0.000000645,2.695344901,0.007415287,gain,ns,-0.00000195,0.0000011,-1.77540076,0.076812796,neg,ns,0.00000962,0.000321148,0.029961604,0.976116955,pos,ns,0.010498144,-0.00000911,0.000011,-0.825264739,0.409855909,neg,ns,0.018064783,Pura,Pura_Exon,18,36287802,36287851,36287802,36287803,50,-,CGGCCGAGCTGCCCGAGGGCACCTCCTTGACTGTGGACAACAAGCGCTTC,"Exon (Pura-201/Pura, exon 2 of 2)",18,36281097,36292535,11439,1,Pura-201,6705,Pura-201,Pura,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,13,19,19290,ENSMUSG00000043991,conserved gene and region,18,36286687,36288029,1343,*,1343,129,0.68652271,0.823041768,0.096053611,4.14E-95,CpGisland,TRUE,U4,Pr-F
8919,cg26795581,-0.000045,0.00000664,-6.778225904,6.14E-11,loss,yes,0.00002,0.0000113,1.775229137,0.076841178,pos,ns,0.009732911,0.003306739,2.943356548,0.003491931,pos,ns,2.456934366,-0.000393852,0.000113718,-3.46339843,0.000608442,neg,ns,0.656505787,Dlk2,Dlk2_Exon,17,46300966,46301015,46301014,46301015,50,+,GGAGGGGCTGCACTGTGAGCGCTGTGTGAGGATGCCTGGCTGCCAGCACG,"Exon (Dlk2-205/Dlk2, exon 4 of 4)",17,46297421,46301005,3585,1,Dlk2-205,3545,Abcc10-204;Abcc10-207;Abcc10-201;Abcc10-202;Dlk2-205;Dlk2-201;Dlk2-202;Dlk2-203;Dlk2-204,Abcc10;Abcc10;Abcc10;Abcc10;Dlk2;Dlk2;Dlk2;Dlk2;Dlk2,27008;26961;26964;24751;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,3,106565,ENSMUSG00000047428,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9612,cg21639837,0.00000265,0.00000568,0.467299748,0.640613731,gain,ns,0.0000171,0.00000965,1.775081414,0.076865613,pos,ns,0.004613949,0.002826233,1.632543888,0.103580253,pos,ns,0.984723033,-0.000217903,0.0000972,-2.241943554,0.02567204,neg,ns,0.156605469,Tenm3,Tenm3_Intron,8,49525967,49526016,49525967,49525968,50,+,CGTTTCGCAGAAAATGGGTCAGGTTAGAGATGTAAATGAGGCCTAAAATG,"Intron (4930555F03Rik-205/4930555F03Rik-205, intron 8 of 9)",8,48646261,48843951,197691,2,Tenm3-207,-682016,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,39,23965,ENSMUSG00000031561,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5013,cg05844937,0.0000971,0.0000115,8.464972783,1.04E-15,gain,yes,-0.0000346,0.0000195,-1.775073603,0.076866906,neg,ns,-0.005277136,0.005710359,-0.924133787,0.356135432,neg,ns,0.448384817,0.000575587,0.000196379,2.931002837,0.003629876,pos,ns,0.398079555,Foxc1,Foxc1_threeUTR,13,31810604,31810653,31810652,31810653,50,+,GGATTGCTGCAAATAAATACACTTTAATTTCAGTCAAAAACTGCTCTACG,3' UTR,13,31806633,31812476,5844,1,Foxc1-201,3971,Foxc1-201,Foxc1,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,7,17300,ENSMUSG00000050295,conserved gene but different region,13,31810652,31810752,101,*,101,11,0.663366337,0.990196078,0.108910891,4.14E-09,CpGisland,TRUE,U3,Pr-B
5608,cg04440019,0.0000247,0.00000544,4.538964989,0.0000081,gain,ns,-0.0000164,0.00000924,-1.774971143,0.076883858,neg,ns,0.001864486,0.00270741,0.688660271,0.491552134,pos,ns,0.308430414,0.0000792,0.0000931,0.850643175,0.395624142,pos,ns,0.885679102,Kirrel3,Kirrel3_Intergenic_upstream,9,34354824,34354873,34354824,34354825,50,-,CGCCCATGGCTGACTCCAAACTGATCACTCAGTCCTGCTGATGAAAGTCC,Distal Intergenic,9,34485894,34489158,3265,1,Kirrel3-204,-131070,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,21,67703,ENSMUSG00000032036,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24986,cg09099888,-0.0000359,0.0000123,-2.909857942,0.003877589,loss,ns,0.0000372,0.0000209,1.774892104,0.076896938,pos,ns,0.009157503,0.0061323,1.493322696,0.136369807,pos,ns,0.865281774,-0.000220545,0.000210889,-1.045786623,0.296474304,neg,ns,0.715927525,Atrn,Atrn_Exon,2,130981983,130982032,130982031,130982032,50,+,GTGCATGTGGTGCAGCAACATGAAGCAGTGTGTGGACTCCAATGCCTACG,"Exon (Atrn-201/Atrn, exon 17 of 29)",2,130906495,131030333,123839,1,Atrn-201,75488,Atrn-201;Atrn-203;Atrn-202,Atrn;Atrn;Atrn,0;0;-753,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,11990,ENSMUSG00000027312,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24117,cg08374054,0.00000596,0.00000906,0.657379515,0.511424705,gain,ns,-0.0000273,0.0000154,-1.774680271,0.076932001,neg,ns,0.024364511,0.004508855,5.403703035,0.00000013,pos,ns,6.884847686,-0.000771191,0.000155059,-4.973526075,0.00000109,neg,yes,0.791384308,Pcca,Pcca_Intron,14,122687226,122687275,122687226,122687227,50,+,CGTGAGACCTGTTGAAAGTACAAGTGATAATGGACAAACTATACCCCCTA,"Intron (Pcca-201/Pcca, intron 14 of 23)",14,122534339,122889944,355606,1,Pcca-201,152887,Pcca-201;Pcca-213,Pcca;Pcca,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,7,110821,ENSMUSG00000041650,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12350,cg20429727,0.0000261,0.0000156,1.680037363,0.09395744,gain,ns,-0.0000469,0.0000264,-1.774643453,0.076938097,neg,ns,0.077755837,0.00774216,10.04317109,9.87E-21,pos,yes,20.00564242,-0.002436097,0.000266252,-9.149581438,7.85E-18,neg,yes,0.396697158,Fign,Fign_Intron,2,63982741,63982790,63982741,63982742,50,-,CGACTTAATGATTAAGAAATACTGAAAACAAGGTGGGAAGGATTGCAGTA,"Intron (Fign-203/Fign, intron 2 of 2)",2,63971507,64098012,126506,2,Fign-203,115222,Fign-203;Fign-201;Fign-202;Fign-204,Fign;Fign;Fign;Fign,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,84,60344,ENSMUSG00000075324,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7703,cg04491282,0.0000506,0.00000934,5.415599566,0.000000123,gain,yes,0.0000282,0.0000159,1.774500635,0.076961746,pos,ns,0.010212234,0.004649293,2.196513274,0.028795369,pos,ns,1.540677351,-0.0000972,0.000159889,-0.607686105,0.543840579,neg,ns,0.65482984,Arhgap15,Arhgap15_Intron,2,43787252,43787301,43787252,43787253,50,+,CGGTTCCTGTAATACAGCTGACCCCGAATCACGTTACCTTGTCATTTCTC,"Intron (Arhgap15-203/Arhgap15, intron 2 of 14)",2,43748824,44395953,647130,1,Arhgap15-203,38428,Arhgap15-203;Arhgap15-202;Arhgap15-205;Arhgap15-201,Arhgap15;Arhgap15;Arhgap15;Arhgap15,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,72,78,76117,ENSMUSG00000049744,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1771,cg20116877,0.00000301,0.00000257,1.17059291,0.242661521,gain,ns,-0.00000776,0.00000437,-1.774428444,0.076973702,neg,ns,-0.001499906,0.001281545,-1.170389447,0.24274323,neg,ns,0.614852873,0.0000419,0.0000441,0.951836893,0.34192124,pos,ns,0.037748613,Kctd1,Kctd1_Promoter,18,15151209,15151258,15151209,15151210,50,+,CGCGCTCTCGCCCCATGCCTGGCACATGCGTAAAAGCGAGTTGCGCCCAA,Promoter (<=1kb),18,14968685,15151446,182762,2,Kctd1-201,188,Kctd1-201,Kctd1,0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,6,24,106931,ENSMUSG00000036225,mapped to different genes,18,15150796,15151253,458,*,458,65,0.744541485,1.024784854,0.141921397,1.05E-60,CpGisland,TRUE,U3,Pr-B
23495,cg16120895,0.0000138,0.00000473,2.91935739,0.003764453,gain,ns,-0.0000143,0.00000804,-1.77402845,0.077039976,neg,ns,0.000931866,0.002355233,0.39565763,0.692629766,pos,ns,0.159498848,-0.0000928,0.000081,-1.145534225,0.252871484,neg,ns,0.847550371,Dpyd,Dpyd_threeUTR,3,118674546,118674595,118674546,118674547,50,-,CGAGGAGCTCTCCGAGAAGCAATGAGGTAAGTCTGGGTCACCATAGCAAC,3' UTR,3,118562129,119432924,870796,1,Dpyd-201,112417,Dpyd-201;Dpyd-202;Dpyd-205;Dpyd-204,Dpyd;Dpyd;Dpyd;Dpyd,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,29,99586,ENSMUSG00000033308,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20147,cg12815994,0.00000181,0.0000246,0.073715521,0.94128429,gain,ns,0.000074,0.0000417,1.773837034,0.077071707,pos,ns,0.008753893,0.012219153,0.716407501,0.47427911,pos,ns,0.323966004,0.000327684,0.000420216,0.77979906,0.436104105,pos,ns,0.820209417,Calcoco1,Calcoco1_Intergenic_upstream,15,102737414,102737463,102737462,102737463,50,+,TGACGACTTTCCGCGGGACGGCTCCCTGGGGGATGATTAACACTTCATCG,Distal Intergenic,15,102706777,102722178,15402,2,Calcoco1-201,-15236,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,20,29,67488,ENSMUSG00000023055,conserved gene but different region,15,102737359,102737627,269,*,269,21,0.565055762,0.991922739,0.078066915,4.85E-14,CpGisland,TRUE,U11,Tr-P
8695,cg21532698,0.000223308,0.0000221,10.11089514,5.87E-21,gain,yes,-0.0000666,0.0000375,-1.773752782,0.077085677,neg,ns,0.018336371,0.010992356,1.668102019,0.096305192,pos,ns,1.016350298,-0.000732594,0.000378026,-1.937943975,0.053537896,neg,ns,0.099984859,Gm31907,Gm31907_fiveUTR,18,45559347,45559396,45559395,45559396,50,-,GCAGGTGATGTCATGCCCATTGTTTTGGTGCGCCCAACCAATCGGACTCG,Promoter (<=1kb),18,45501590,45560130,58541,2,Gm31907-202,734,Gm31907-202;Kcnn2-205;Kcnn2-201;Kcnn2-207;Kcnn2-206;Kcnn2-202;Kcnn2-208;Kcnn2-203,Gm31907;Kcnn2;Kcnn2;Kcnn2;Kcnn2;Kcnn2;Kcnn2;Kcnn2,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,15,15,102634286,NA,mapped to different genes,18,45559377,45559494,118,*,118,12,0.677966102,0.932192232,0.101694915,1.49E-09,CpGisland,TRUE,U3,Pr-B
14490,cg10340837,-0.00000426,0.00000403,-1.056735152,0.291455275,loss,ns,0.0000121,0.00000684,1.773664184,0.07710037,pos,ns,0.004769934,0.002005007,2.379010933,0.017964339,pos,ns,1.745588761,-0.000176225,0.000069,-2.555758514,0.011072538,neg,ns,0.891415844,Ptprd,Ptprd_Exon,4,75957140,75957189,75957188,75957189,50,+,TTTGTGTCAGCTTCTGAATGTAGGCATACAAGTTTCTAGCTGGCACTTCG,"Exon (Ptprd-206/Ptprd, exon 30 of 36)",4,75941238,76449980,508743,2,Ptprd-206,492791,Ptprd-206;Ptprd-204;Ptprd-213;Ptprd-220;Ptprd-203;Ptprd-217;Ptprd-218;Ptprd-219;Ptprd-201,Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,13,32,19266,ENSMUSG00000028399,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13511,cg26429530,-0.0000136,0.00000679,-2.001633055,0.046195365,loss,ns,-0.0000204,0.0000115,-1.773494058,0.07712859,neg,ns,-0.001779911,0.003377376,-0.527010093,0.598563497,neg,ns,0.222889772,-0.000252015,0.000116148,-2.169781049,0.030782757,neg,ns,0.108949453,Arid4a,Arid4a_fiveUTR,12,71015950,71015999,71015950,71015951,50,-,CGGCGTCATGAGCAGCCAATAGGAGTTCGTGTAGAAGCGAGTCTGCTCAA,Promoter (<=1kb),12,71015990,71098592,82603,1,Arid4a-201,0,Arid4a-201;Arid4a-203;Arid4a-202,Arid4a;Arid4a;Arid4a,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,9,238247,ENSMUSG00000048118,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
20237,cg08737755,-0.00000659,0.0000065,-1.01416818,0.311293395,loss,ns,0.0000196,0.000011,1.773394058,0.077145182,pos,ns,-0.001127778,0.003233437,-0.348786097,0.727486671,neg,ns,0.138174959,0.0000965,0.000111198,0.86741258,0.386386927,pos,ns,0.06070885,Hoxc10,Hoxc10_Promoter,15,102966629,102966678,102966629,102966630,50,-,CGCTGACGTCACGGCCGTCTGAATCATCAAGGCCATTTTCAAATCCCATT,Promoter (<=1kb),15,102966796,102971893,5098,1,Hoxc10-201,-167,Hoxc10-201;Hoxc5-202,Hoxc10;Hoxc5,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,8,21,209448,ENSMUSG00000022484,mapped to different genes,15,102966502,102966645,144,*,144,15,0.694444444,0.876623377,0.104166667,4.95E-12,CpGisland,TRUE,NA,NRS
27642,cg17049500,0.00000667,0.0000013,5.147910163,0.000000469,gain,yes,-0.0000039,0.0000022,-1.773376012,0.077148176,neg,ns,-0.00035433,0.000645027,-0.549325446,0.583177608,neg,ns,0.23419916,-0.0000225,0.0000222,-1.015897662,0.310470335,neg,ns,0.026170114,Stx16,Stx16_fiveUTR,2,174077140,174077189,174077188,174077189,50,+,TGAGTAGTCACATCACCTCCAGCCCTCTGCATTCACGTAGCATTGCTGCG,Promoter (<=1kb),2,174076308,174092433,16126,1,Stx16-205,832,Stx16-205;Stx16-203;Stx16-204;Stx16-202;Stx16-201;Stx16-206,Stx16;Stx16;Stx16;Stx16;Stx16;Stx16,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,6,6,228960,ENSMUSG00000027522,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
27833,cg04062007,-0.0000223,0.00000708,-3.149451335,0.001795212,loss,ns,-0.0000213,0.000012,-1.773312312,0.077158747,neg,ns,-0.015706617,0.003521368,-4.460374037,0.0000115,neg,ns,4.940931909,0.000406904,0.0001211,3.360078612,0.000876611,pos,ns,0.824361438,Esrrg,Esrrg_Intron,1,188185140,188185189,188185140,188185141,50,+,CGCCTGGATATTGTTTGGGCCTGATAGATCTGTCTGTAGTTCATCAAAGA,"Intron (Esrrg-203/Esrrg, intron 6 of 7)",1,187609029,188214386,605358,1,Esrrg-203,576111,Esrrg-203;Esrrg-201;Esrrg-202,Esrrg;Esrrg;Esrrg,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,60,26381,ENSMUSG00000026610,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12593,cg18905677,0.000018,0.00000469,3.84439779,0.000146651,gain,ns,0.0000141,0.00000797,1.773259978,0.077167432,pos,ns,0.002562117,0.002335469,1.097045942,0.273472742,pos,ns,0.563085955,-0.000213808,0.0000803,-2.66206865,0.00817125,neg,ns,0.896971095,Scn2a,Scn2a_fiveUTR,2,65670490,65670539,65670538,65670539,50,-,GAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCG,5' UTR,2,65620771,65690175,69405,1,Scn2a-204,49719,Scn2a-204;Scn2a-201;Scn2a-209;Scn2a-205;Scn2a-202,Scn2a;Scn2a;Scn2a;Scn2a;Scn2a,0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,5,110876,ENSMUSG00000075318,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20129,cg16346788,-0.0000157,0.00000831,-1.890286379,0.059652263,loss,ns,0.000025,0.0000141,1.773126859,0.077189529,pos,ns,-0.002242509,0.004134201,-0.542428726,0.587912917,neg,ns,0.230686998,-0.0000628,0.000142175,-0.441519633,0.659144658,neg,ns,0.839633765,Meioc,Meioc_Exon,11,102675810,102675859,102675858,102675859,50,-,CAAAGACCAATTAAAACCCGTAGTGGACCAGCCAGTGAACTTCATATTCG,"Exon (Meioc-201/Meioc, exon 5 of 8)",11,102665588,102682237,16650,1,Meioc-201,10222,Meioc-203;Meioc-201;Meioc-202,Meioc;Meioc;Meioc,12094;0;10187,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,268491,ENSMUSG00000051455,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5297,cg22008756,0.000011,0.00000397,2.779282247,0.005780546,gain,ns,-0.000012,0.00000674,-1.772907944,0.077225878,neg,ns,-0.0000608,0.001975244,-0.030801237,0.975447874,neg,ns,0.010795933,0.0000388,0.0000679,0.570685186,0.568626491,pos,ns,0.957691969,Atxn7l1,Atxn7l1_Intron,12,33345209,33345258,33345257,33345258,50,-,GTTACTTGTGAGGCCAGACAGTAAATTGTATTTATAGGCACTCACAGGCG,"Intron (Atxn7l1-212/Atxn7l1, intron 6 of 12)",12,33147754,33373030,225277,1,Atxn7l1-212,197455,Atxn7l1-212;Atxn7l1-204;Atxn7l1-202;Atxn7l1-207;Atxn7l1-213;Atxn7l1-205,Atxn7l1;Atxn7l1;Atxn7l1;Atxn7l1;Atxn7l1;Atxn7l1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,Intron,7,24,380753,ENSMUSG00000020564,conserved gene and region,12,33345257,33345411,155,*,155,14,0.64516129,0.885352917,0.090322581,2.25E-10,CpGisland,TRUE,U12,Tr-I
16905,cg00769951,0.0000004,0.00000363,0.110062384,0.912431116,gain,ns,0.0000109,0.00000618,1.77289214,0.077228502,pos,ns,0.002152464,0.001809174,1.189749109,0.235055416,pos,ns,0.628829737,-0.000052,0.0000622,-0.835671234,0.403983504,neg,ns,0.923872264,Ppm1e,Ppm1e_Exon,11,87231511,87231560,87231559,87231560,50,-,TCATAGCCTAGGTCGGCTGGTGCTGAGCACTGGTGCTGAGGCCAAGGGCG,"Exon (Ppm1e-201/Ppm1e, exon 7 of 7)",11,87226906,87359023,132118,2,Ppm1e-201,127463,Ppm1e-201,Ppm1e,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,320472,ENSMUSG00000046442,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15934,cg11477279,0.00000435,0.00000741,0.587405059,0.55735929,gain,ns,0.0000223,0.0000126,1.772701844,0.077260111,pos,ns,0.001993545,0.003686273,0.540802461,0.589032113,pos,ns,0.229861027,-0.000117205,0.000126771,-0.924547439,0.355920475,neg,ns,0.888809604,Dmd,Dmd_Exon,X,83924933,83924982,83924933,83924934,50,+,CGAGAGGAAATAAAGATAAAACAGCAGCTGTTACAGACAAAACATAATGC,"Exon (Dmd-203/Dmd, exon 39 of 79)",20,82948903,85206141,2257239,1,Dmd-203,976030,Dmd-203;Dmd-215;Dmd-209,Dmd;Dmd;Dmd,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,20,28,13405,ENSMUSG00000045103,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11645,cg20483831,-0.00000513,0.0000039,-1.316120952,0.189105795,loss,ns,-0.0000117,0.00000662,-1.772458798,0.077300498,neg,ns,-0.003954326,0.001940316,-2.037980705,0.042400468,neg,ns,1.372629349,0.0000373,0.0000667,0.558747289,0.576737578,pos,ns,0.898594707,Naa35,Naa35_Exon,13,59608151,59608200,59608151,59608152,50,-,CGAAGTCGACAAGGAGAAGAAAGAGATCCAGAAGTTGAACTAGAAGTAAT,"Exon (Naa35-201/Naa35, exon 9 of 23)",13,59585295,59635922,50628,1,Naa35-201,22856,Naa35-201;Naa35-208;Naa35-217;Naa35-215;Naa35-204;Naa35-202;Naa35-212;Naa35-209;Naa35-214,Naa35;Naa35;Naa35;Naa35;Naa35;Naa35;Naa35;Naa35;Naa35,0;0;0;0;0;-1057;-1182;-1217;-1302,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,78689,ENSMUSG00000021555,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8830,cg26018357,-0.0000117,0.00000461,-2.547221011,0.011341322,loss,ns,0.0000139,0.00000783,1.772203866,0.077342878,pos,ns,-0.00043966,0.002295097,-0.191564757,0.848208562,neg,ns,0.071497348,-0.0000137,0.0000789,-0.173623334,0.862274811,neg,ns,0.062899936,Atxn1,Atxn1_Promoter,13,45965094,45965143,45965142,45965143,50,+,CCAGTATGTAAATGTGTAATAGAAGCCAAATATGGAGCAGTTGGCTGCCG,Promoter (<=1kb),13,45792329,45965008,172680,2,Atxn1-204,-86,Atxn1-201;Atxn1-202;Atxn1-203;Atxn1-204;Atxn1-206,Atxn1;Atxn1;Atxn1;Atxn1;Atxn1,0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,10,20238,ENSMUSG00000046876,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
21694,cg11463927,-0.00000117,0.00000714,-0.164210852,0.869672173,loss,ns,-0.0000215,0.0000121,-1.772128993,0.077355329,neg,ns,-0.004025625,0.003551912,-1.133368603,0.257935245,neg,ns,0.588489311,-0.000118014,0.00012215,-0.966142853,0.334725807,neg,ns,0.754293905,Zfhx3,Zfhx3_Intron,8,108889167,108889216,108889167,108889168,50,+,CGGGTGGTTTTGTTTTGCTGATCTGTCAGTTTTTCAAGGATTTAATTGCA,"Intron (Zfhx3-204/Zfhx3, intron 10 of 15)",8,107942644,108961630,1018987,1,Zfhx3-204,946523,Zfhx3-204;Zfhx3-201,Zfhx3;Zfhx3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,114,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24003,cg11020711,0.00000186,0.00000415,0.448105578,0.654390013,gain,ns,-0.0000125,0.00000704,-1.771931789,0.07738813,neg,ns,0.000605413,0.002063031,0.293457849,0.769368573,pos,ns,0.113865557,-0.0000433,0.0000709,-0.610657189,0.541873997,neg,ns,0.917719917,Atxn2,Atxn2_Exon,5,121813524,121813573,121813524,121813525,50,+,CGCATTTCCCCTATATGACGCACCCTTCAGGTGAGGCGTGTGTGTGCAGG,"Exon (Atxn2-201/Atxn2, exon 24 of 25)",5,121711609,121814950,103342,1,Atxn2-201,101915,Atxn2-201;Atxn2-209;Atxn2-214;Atxn2-215;Atxn2-217;Atxn2-210;Atxn2-203;Atxn2-206;Atxn2-212;Atxn2-211;Atxn2-205;Atxn2-218;Sh2b3-205;Sh2b3-202;Sh2b3-208;Sh2b3-204;Sh2b3-201;Sh2b3-203,Atxn2;Atxn2;Atxn2;Atxn2;Atxn2;Atxn2;Atxn2;Atxn2;Atxn2;Atxn2;Atxn2;Atxn2;Sh2b3;Sh2b3;Sh2b3;Sh2b3;Sh2b3;Sh2b3,0;0;0;11778;11413;0;0;0;2860;2559;0;0;23252;23286;15168;22531;23277;23244,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,16,20239,ENSMUSG00000042605,conserved gene but different region,5,121813431,121813604,174,*,174,15,0.632183908,0.881458967,0.086206897,8.65E-11,CpGisland,TRUE,U10,Tr-S
15327,cg26205447,-0.00000567,0.0000104,-0.547410488,0.584490631,loss,ns,0.0000312,0.0000176,1.771760873,0.077416567,pos,ns,0.004725555,0.005157241,0.916295284,0.360224289,pos,ns,0.443427007,-0.000113123,0.000177357,-0.637825721,0.524057971,neg,ns,0.659333678,Cacna1i,Cacna1i_Exon,15,80358782,80358831,80358830,80358831,50,+,CACAGGTGGGCTCCTTCTTCATGATCAACCTGTGCCTCGTTGTCATAGCG,"Exon (Cacna1i-202/Cacna1i, exon 9 of 37)",15,80287238,80398279,111042,1,Cacna1i-202,71544,Cacna1i-202;Cacna1i-205,Cacna1i;Cacna1i,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,11,239556,ENSMUSG00000022416,conserved gene and region,15,80358819,80358934,116,*,116,11,0.646551724,0.911428571,0.094827586,0.000000019,CpGisland,TRUE,U15,NS
26043,cg25704365,-0.00000273,0.00000193,-1.411930318,0.158973459,loss,ns,0.00000581,0.00000328,1.771681176,0.077429831,pos,ns,0.000175091,0.000960963,0.182203353,0.85554223,pos,ns,0.067758549,-0.0000586,0.000033,-1.772098827,0.077360346,neg,ns,0.965088708,Etnk1,Etnk1_Intergenic_downstream,6,143385799,143385848,143385847,143385848,50,+,CAATTTTCTTAAGCTTCCTTATCCTGAGCCCTTCTGTTGAAAATTGGCCG,Distal Intergenic,6,143167254,143232307,65054,1,Etnk1-204,218545,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,10,75320,ENSMUSG00000030275,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26657,cg22684844,0.0000198,0.0000113,1.753988335,0.080420644,gain,ns,0.000034,0.0000192,1.771622115,0.077439661,pos,ns,-0.007154607,0.005614488,-1.274311571,0.203507449,neg,ns,0.69141969,0.000218646,0.000193082,1.132402141,0.258340529,pos,ns,0.825907842,Bicd1,Bicd1_Exon,6,149519137,149519186,149519137,149519138,50,+,CGTGCCCACCATAGACACTTACCTCCTGCATAGTCAGGGCCCACAGACAC,"Exon (Bicd1-201/Bicd1, exon 7 of 10)",6,149408984,149563329,154346,1,Bicd1-202,110153,Bicd1-202;Bicd1-203;Bicd1-201;Bicd1-207;Bicd1-208;Bicd1-206,Bicd1;Bicd1;Bicd1;Bicd1;Bicd1;Bicd1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,6,12121,ENSMUSG00000003452,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1614,cg13608832,-0.0000711,0.00000873,-8.147449257,9.23E-15,loss,yes,0.0000263,0.0000148,1.771454663,0.077467537,pos,ns,-0.017012634,0.00434354,-3.916766725,0.000110427,neg,ns,3.956925722,0.000219037,0.000149374,1.466365943,0.14356226,pos,ns,0.783425375,Zfp521,Zfp521_Intron,18,13850635,13850684,13850635,13850636,50,-,CGCTGAAGGCCTGTCTTTGTTAGCCAGCCAGGCTTTCCGGACCATCTTCT,"Intron (Zfp521-201/Zfp521, intron 3 of 7)",18,13687013,13972787,285775,2,Zfp521-201,122103,Zfp521-201;Zfp521-204;Zfp521-203;Zfp521-207;Zfp521-202,Zfp521;Zfp521;Zfp521;Zfp521;Zfp521,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,81,225207,ENSMUSG00000024420,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17083,cg17384517,0.0000114,0.00000313,3.638874048,0.000320677,gain,ns,-0.00000943,0.00000532,-1.771385415,0.077479067,neg,ns,-0.004179665,0.001559925,-2.679401618,0.007769244,neg,ns,2.109621229,0.000129291,0.0000536,2.410098,0.016530347,pos,ns,0.940679261,Msi2,Msi2_Exon,11,88348811,88348860,88348811,88348812,50,-,CGGCTGTGGGCTGGCCGCACTTATGTAATTCCCCACTCCGGAGTCCTGGC,"Exon (Msi2-203/Msi2, exon 12 of 14)",11,88339382,88718229,378848,2,Msi2-203,369369,Msi2-203;Msi2-201,Msi2;Msi2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,36,76626,ENSMUSG00000069769,conserved gene and region,11,88348768,88348968,201,*,201,21,0.696517413,0.87012987,0.104477612,9.68E-17,CpGisland,TRUE,U11,Tr-P
5233,cg06237677,0.0000567,0.0000128,4.442948915,0.0000124,gain,ns,-0.0000384,0.0000217,-1.771202865,0.07750947,neg,ns,0.004896313,0.006350897,0.77096398,0.441315488,pos,ns,0.355250831,-0.00000445,0.000218407,-0.020371219,0.983760348,neg,ns,0.600493923,Gm6877,Gm6877_Intergenic_downstream,8,33138987,33139036,33138987,33138988,50,-,CGTTCCCACTGGCATCTGTAAATTAGCCTCTGGTAATTATCTGTGTGGGA,Distal Intergenic,8,33191196,33192296,1101,2,Gm6877-201,53309,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,628412,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23465,cg14574905,0.000000407,0.00000219,0.185664497,0.852829294,gain,ns,-0.0000066,0.00000373,-1.771133971,0.077520947,neg,ns,-0.00198982,0.001091648,-1.822766896,0.069301842,neg,ns,1.159255224,-0.0000101,0.0000375,-0.269121465,0.788015241,neg,ns,0.90835069,Clasp1,Clasp1_Exon,1,118531941,118531990,118531989,118531990,50,+,GTTCACCTTCTCTGAAACCCTTCATGCTGCACGCTAGCACGGAGCAGCCG,"Exon (Clasp1-201/Clasp1, exon 23 of 40)",1,118389058,118609432,220375,1,Clasp1-201,142883,Clasp1-201;Clasp1-202;Clasp1-204;Clasp1-218;Clasp1-219;Clasp1-208;Clasp1-216;Clasp1-203;Clasp1-214;Clasp1-220;Clasp1-212;Clasp1-206;Clasp1-205;Clasp1-210;Clasp1-224;Clasp1-221;Clasp1-230;Clasp1-226;Clasp1-213,Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,8,76707,ENSMUSG00000064302,conserved gene and region,1,118531972,118532107,136,*,136,13,0.661764706,0.876984127,0.095588235,5.64E-10,CpGisland,TRUE,U10,Tr-S
1526,cg03295417,0.0000436,0.0000114,3.813935371,0.000165043,gain,ns,-0.0000344,0.0000194,-1.770985814,0.077545632,neg,ns,-0.005677084,0.005690524,-0.997638193,0.319232912,neg,ns,0.495892341,0.000336561,0.000195697,1.719810427,0.086464967,pos,ns,0.849903863,Mrtfb,Mrtfb_Exon,16,13449540,13449589,13449588,13449589,50,-,TTGAGGGCGAGATGAGTTTATGTTTTATCCAACTGGCCCTCAAAGTCCCG,"Exon (Mir193b-201/Mir193b-201, exon 1 of 1)",16,13358421,13417529,59109,1,Mrtfb-204,91168,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,5,239719,ENSMUSG00000009569,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9547,cg09551110,-0.00000281,0.00000861,-0.325801409,0.744794421,loss,ns,0.0000259,0.0000146,1.770743618,0.077585999,pos,ns,0.015131789,0.004286832,3.529829757,0.000478871,pos,ns,3.319781663,-0.000466107,0.000147424,-3.16168003,0.001723785,neg,ns,0.869972823,Tra2a,Tra2a_Exon,6,49253098,49253147,49253098,49253099,50,+,CGAACATTAACCTTAATGGAAAAAGAACATTTAGTATATTTAAGCACGTG,"Exon (Tra2a-202/Tra2a, exon 2 of 9)",6,49243924,49264010,20087,2,Tra2a-204,10863,Tra2a-204;Tra2a-202;Tra2a-201;Tra2a-205,Tra2a;Tra2a;Tra2a;Tra2a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,7,101214,ENSMUSG00000029817,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27594,cg27078800,0.0000342,0.0000135,2.536445162,0.011688877,gain,ns,-0.0000406,0.0000229,-1.770555188,0.077617416,neg,ns,0.017181484,0.006716949,2.557929629,0.011005098,pos,ns,1.95840607,-0.000553649,0.000230995,-2.396799091,0.017130954,neg,ns,0.491641766,Nr1i3,Nr1i3_threeUTR,1,171220565,171220614,171220613,171220614,50,+,CAGGATTTCCTAGGGTCAGAGTGGCTGTGTAGTCATCTCCCCGATACTCG,3' UTR,1,171213986,171220701,6716,1,Nr1i3-208,6579,Apoa2-204;Apoa2-201;Apoa2-203;Apoa2-202;Nr1i3-201;Nr1i3-202;Nr1i3-208;Nr1i3-205;Nr1i3-204;Nr1i3-203;Nr1i3-207;Nr1i3-206;Tomm40l-201;Tomm40l-203;Tomm40l-202;Tomm40l-206;Tomm40l-205;Tomm40l-207;Tomm40l-208;Tomm40l-204,Apoa2;Apoa2;Apoa2;Apoa2;Nr1i3;Nr1i3;Nr1i3;Nr1i3;Nr1i3;Nr1i3;Nr1i3;Nr1i3;Tomm40l;Tomm40l;Tomm40l;Tomm40l;Tomm40l;Tomm40l;Tomm40l;Tomm40l,-4440;-4468;-4470;-4477;6595;6594;0;6571;6563;6544;6544;6216;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,12355,ENSMUSG00000005677,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
207,cg08738827,0.0000365,0.0000211,1.728943476,0.08481479,gain,ns,-0.0000634,0.0000358,-1.770346872,0.077652162,neg,ns,0.029826792,0.010499452,2.840795064,0.00479799,pos,ns,2.318940703,-0.000427858,0.000361075,-1.184954496,0.236943047,neg,ns,0.324254766,Gm21992,Gm21992_threeUTR,19,4765328,4765377,4765376,4765377,50,+,TTGTGCTCTCTTTCAGGTAGGATAATTGCGGACTGAACCCTCGGGCTGCG,3' UTR,19,4742913,4811612,68700,2,Gm21992-203,46235,Gm21992-203;Rbm4b-207;Rbm4b-208;Rbm4b-209;Rbm4b-204;Rbm4b-205;Rbm4b-202;Rbm4b-201;Rbm4b-203;Rbm4b-210;Rbm4b-206,Gm21992;Rbm4b;Rbm4b;Rbm4b;Rbm4b;Rbm4b;Rbm4b;Rbm4b;Rbm4b;Rbm4b;Rbm4b,0;0;0;0;8785;8764;8763;0;8747;8423;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,21,48,102902673,ENSMUSG00000096370,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12083,cg18409580,-0.00000153,0.00000177,-0.862090616,0.389304034,loss,ns,0.00000533,0.00000301,1.770326604,0.077655543,pos,ns,0.002091551,0.000882116,2.371061265,0.018348184,pos,ns,1.736406924,-0.0000503,0.0000303,-1.657975521,0.098333917,neg,ns,0.952799196,Ccar1,Ccar1_Exon,10,62764505,62764554,62764505,62764506,50,+,CGATGGTAGCGAATCTCTGCAAAACGGTACCTGTTGCAAGGGAAGAAGCA,"Exon (Ccar1-201/Ccar1, exon 14 of 25)",10,62743928,62792231,48304,2,Ccar1-201,27677,Ccar1-201;Ccar1-211;Ccar1-207;Ccar1-206;Ccar1-212;Ccar1-205;Ccar1-210;Gm48145-201,Ccar1;Ccar1;Ccar1;Ccar1;Ccar1;Ccar1;Ccar1;Gm48145,0;0;-1038;0;-4156;0;0;2754,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,10,67500,ENSMUSG00000020074,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27600,cg11827048,0.00000578,0.00000491,1.175320743,0.24076833,gain,ns,-0.0000148,0.00000835,-1.770240266,0.077669948,neg,ns,-0.001332502,0.002445656,-0.544844388,0.586252284,neg,ns,0.231915452,-0.0000198,0.0000841,-0.235138578,0.814256425,neg,ns,0.851007099,Dedd,Dedd_threeUTR,1,171338487,171338536,171338487,171338488,50,+,CGTGGACTCATCCGAAATGGACGTGACTTCTTATTGGCACTGGAGCGCCA,3' UTR,1,171329145,171342331,13187,1,Dedd-204,9342,Dedd-204;Dedd-203;Dedd-201;Dedd-209;Dedd-206;Dedd-208;Dedd-210;Dedd-202;Dedd-207;Dedd-205;Nit1-206;Nit1-203;Nit1-201;Nit1-205;Nit1-202,Dedd;Dedd;Dedd;Dedd;Dedd;Dedd;Dedd;Dedd;Dedd;Dedd;Nit1;Nit1;Nit1;Nit1;Nit1,0;0;0;0;0;8401;8132;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,4,21945,ENSMUSG00000013973,mapped to different genes,1,171338487,171338670,184,*,184,12,0.576086957,0.788571429,0.065217391,0.00000024,CpGisland,TRUE,U10,Tr-S
3549,cg01498131,-0.00000456,0.00000244,-1.872573508,0.062068445,loss,ns,-0.00000733,0.00000414,-1.770223558,0.077672736,neg,ns,-0.000595911,0.001212895,-0.49131297,0.623552765,neg,ns,0.20512679,0.0000158,0.0000417,0.377655174,0.705945206,pos,ns,0.943045775,Agap3,Agap3_Intron,5,24490551,24490600,24490599,24490600,50,-,TAGAAACTAATTGAATGTGGCTTAATCACACATCTTAATAGCTTTCCACG,"Intron (Agap3-201/Agap3, intron 10 of 17)",5,24452177,24502047,49871,1,Agap3-201,38374,Agap3-201;Agap3-202,Agap3;Agap3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,13,213990,ENSMUSG00000023353,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6346,cg09083157,-0.0000081,0.0000056,-1.445242857,0.149399777,loss,ns,0.0000169,0.00000952,1.770176597,0.077680572,pos,ns,-0.006246471,0.002789573,-2.239221632,0.025850519,neg,ns,1.58753074,0.000395733,0.0000959,4.125089142,0.0000477,pos,ns,0.798979414,Tshz3,Tshz3_Intergenic_downstream,7,36945187,36945236,36945187,36945188,50,-,CGATATTAAGTTAGAGAGGCCAAATGGAGGGCAGCGCCAGGCTCAGGTGA,Distal Intergenic,7,36698217,36702113,3897,1,Tshz3-202,247019,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,21,58,243931,ENSMUSG00000021217,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
297,cg16468121,-0.0000689,0.000011,-6.240499342,1.43E-09,loss,yes,0.0000332,0.0000187,1.770037106,0.077703852,pos,ns,-0.009526653,0.0054923,-1.734547096,0.083815051,neg,ns,1.076677988,-0.00028498,0.00018888,-1.50879331,0.132370093,neg,ns,0.822148482,Cdk14,Cdk14_Exon,5,5036478,5036527,5036526,5036527,50,-,GTCTGTACCACAAGGTAACCACTTCGTTGGAGTATGTGTGGCTAGGGACG,Promoter (<=1kb),5,4931690,5036516,104827,2,Cdk14-211,0,Cdk14-203;Cdk14-201;Cdk14-202;Cdk14-204;Cdk14-207;Cdk14-211;Cdk14-208,Cdk14;Cdk14;Cdk14;Cdk14;Cdk14;Cdk14;Cdk14,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,16,18647,ENSMUSG00000028926,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5300,cg16925171,0.0000497,0.0000107,4.625524753,0.0000055,gain,ns,0.0000323,0.0000182,1.769927985,0.077722068,pos,ns,0.001575594,0.0053424,0.294922435,0.768250544,pos,ns,0.114497123,-0.000177513,0.000183725,-0.966192446,0.334701034,neg,ns,0.804637675,Gm10698,Gm10698_Intergenic_upstream,9,33360071,33360120,33360119,33360120,50,-,GATTCTTAATTGGACAGGTGTGCAAGAAAACTCTGGCTGTGAGCACAGCG,Distal Intergenic,9,33728247,33728850,604,1,Gm10698-201,-368176,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,100862175,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20407,cg17267699,-0.00000688,0.0000107,-0.644571361,0.519681673,loss,ns,0.0000321,0.0000181,1.76963816,0.077770465,pos,ns,-0.000881921,0.005310882,-0.166059309,0.868218526,neg,ns,0.061370951,0.00012803,0.000182641,0.700990943,0.483834505,pos,ns,0.332335485,Hoxc4,Hoxc4_Intron,15,103032936,103032985,103032936,103032937,50,-,CGACGAGGCAAGCGCTCCTACCACCGCTGGCAGATTTAGTCTAATAAATA,"Intron (Hoxc4-202/Hoxc4, intron 1 of 3)",15,103018934,103036405,17472,1,Hoxc4-202,14002,Hoxc4-202;Hoxc4-201,Hoxc4;Hoxc4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,91,15423,ENSMUSG00000075394,conserved gene and region,15,103032736,103032961,226,*,226,19,0.517699115,1.262198707,0.084070797,2.37E-13,CpGisland,TRUE,U13,Hc-P
26135,cg06295366,0.0000746,0.00000801,9.314106362,2.35E-18,gain,yes,-0.0000241,0.0000136,-1.769594108,0.077777823,neg,ns,-0.006612213,0.003986532,-1.658637702,0.098200217,neg,ns,1.007887552,0.00028966,0.000137097,2.112816607,0.035415611,pos,ns,0.57090409,Shank2,Shank2_fiveUTR,7,144175728,144175777,144175776,144175777,50,-,GGTGGGCTTTGTCACCAGCACGCTGGGTCTGGCATGCCCAGCTATGCTCG,5' UTR,7,144001928,144424494,422567,1,Shank2-203,173800,Shank2-203;Shank2-206;Shank2-202,Shank2;Shank2;Shank2,0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,5,210274,ENSMUSG00000037541,conserved gene and region,7,144175748,144175899,152,*,152,19,0.736842105,0.922094508,0.125,8.97E-17,CpGisland,TRUE,U11,Tr-P
7576,cg23851675,0.00000109,0.00000168,0.651906477,0.514944539,gain,ns,-0.00000504,0.00000285,-1.769587913,0.077778858,neg,ns,0.001514026,0.000835048,1.813099971,0.070783444,pos,ns,1.150068309,-0.0000683,0.0000287,-2.377519832,0.018035793,neg,ns,0.958515779,Cpeb2,Cpeb2_threeUTR,5,43286936,43286985,43286936,43286937,50,-,CGATTTTATGCAGACTGGATGTAATATTTGTAATCCCTGTGCAATTTTGT,3' UTR,5,43233170,43289723,56554,1,Cpeb2-204,53766,Cpeb2-204;Cpeb2-201;Cpeb2-205,Cpeb2;Cpeb2;Cpeb2,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,11,231207,ENSMUSG00000039782,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7286,cg24055081,-0.00000435,0.00000172,-2.534185548,0.011762949,loss,ns,0.00000516,0.00000292,1.769380318,0.077813542,pos,ns,0.002177274,0.000854015,2.549455534,0.011270416,pos,ns,1.948060045,-0.0000871,0.0000294,-2.964000199,0.003272077,neg,ns,0.064264867,Hivep1,Hivep1_Promoter,13,42052911,42052960,42052911,42052912,50,+,CGTTGCAGAGGGGTTTTCCCAGGCTCCGCCCTCCACATTCATTCATGTTT,Promoter (<=1kb),13,42052021,42185026,133006,1,Hivep1-201,890,Hivep1-201;Hivep1-202,Hivep1;Hivep1,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,4,6,110521,ENSMUSG00000021366,conserved gene but different region,13,42051650,42052938,1289,*,1289,159,0.759503491,0.855359587,0.123351435,2.78E-136,CpGisland,TRUE,U1,Pr-A
3398,cg02428365,-0.00000386,0.00000527,-0.73156734,0.464985332,loss,ns,0.0000158,0.00000895,1.769224118,0.077839648,pos,ns,0.000494181,0.002623044,0.188399714,0.850686594,pos,ns,0.070230411,-0.0000693,0.0000902,-0.767989598,0.443077963,neg,ns,0.554675833,Gm12062,Gm12062_Intergenic_upstream,11,24000767,24000816,24000767,24000768,50,+,CGTGCAACAGTTACCTAGTAAGTGGTTTTATAGGGAGTTTCACCCACACG,Distal Intergenic,11,23928596,23928854,259,2,Gm12062-201,-71913,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6222,cg15047641,-0.0000303,0.0000129,-2.344930525,0.019661188,loss,ns,0.0000388,0.000022,1.769009964,0.077875451,pos,ns,0.012710049,0.006433655,1.975556468,0.049091668,pos,ns,1.308992207,-0.000749319,0.000221253,-3.3867074,0.000798551,neg,ns,0.660474933,Tenm2,Tenm2_Intron,11,36420419,36420468,36420467,36420468,50,+,AAATACCATTATTACTGCCCTGACAAACAGTTAGTTATTGGATTTGGTCG,"Intron (Tenm2-202/Tenm2, intron 4 of 30)",11,36006656,37235882,1229227,2,Tenm2-202,815414,Tenm2-202;Tenm2-208;Tenm2-201;Tenm2-204;Tenm2-205;Tenm2-206;Tenm2-203,Tenm2;Tenm2;Tenm2;Tenm2;Tenm2;Tenm2;Tenm2,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,47,84,23964,ENSMUSG00000049336,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14282,cg05850818,0.000107124,0.0000133,8.034917449,1.98E-14,gain,yes,-0.0000401,0.0000226,-1.768938475,0.077887406,neg,ns,0.018461772,0.006635603,2.78222969,0.005729593,pos,ns,2.241876219,-0.000710907,0.000228198,-3.115311669,0.00200934,neg,ns,0.156724605,Smg6,Smg6_Intron,11,75047385,75047434,75047433,75047434,50,+,TGCCCAGACCTTCGCATTCTGATGCTATATATCTTCCTAATTGTAGCTCG,"Intron (Smg6-201/Smg6, intron 12 of 18)",11,74925823,75164448,238626,1,Smg6-201,121562,Smg6-201;Smg6-202;Smg6-204,Smg6;Smg6;Smg6,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,34,103677,ENSMUSG00000038290,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
13475,cg06897917,-0.00000261,0.00000264,-0.98605649,0.324874371,loss,ns,0.00000795,0.00000449,1.768640537,0.077937245,pos,ns,0.002698766,0.001316177,2.050459099,0.041160276,pos,ns,1.385521721,-0.0000941,0.0000453,-2.079033979,0.038436157,neg,ns,0.941404242,Xpo7,Xpo7_Exon,14,70687628,70687677,70687628,70687629,50,-,CGACAGACAAGCTCACCATCCATGGCGTCTTGCTCATCAGTGCTGGCAAA,"Exon (Xpo7-202/Xpo7, exon 13 of 28)",14,70654246,70766628,112383,2,Xpo7-202,78951,Xpo7-202;Xpo7-201;Xpo7-206;Xpo7-203;Xpo7-204;Xpo7-205,Xpo7;Xpo7;Xpo7;Xpo7;Xpo7;Xpo7,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,13,65246,ENSMUSG00000022100,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11900,cg21623089,0.0000404,0.00000543,7.444839867,9.67E-13,gain,yes,-0.0000163,0.00000922,-1.76854064,0.077953961,neg,ns,0.0061627,0.002702127,2.280684568,0.023245516,pos,ns,1.633660817,-0.000104524,0.0000929,-1.124810987,0.261539294,neg,ns,0.89488098,Csnk1a1,Csnk1a1_Intron,18,61571812,61571861,61571812,61571813,50,+,CGGCCATTGTTGCAATGTAAGCAATACTGTTTGATGCACTGCCACCCTCT,"Intron (Csnk1a1-204/Csnk1a1, intron 4 of 9)",18,61555274,61590061,34788,1,Csnk1a1-204,16538,Csnk1a1-204;Csnk1a1-206;Csnk1a1-201;Csnk1a1-207;Csnk1a1-202;Csnk1a1-210;Csnk1a1-208;Csnk1a1-203,Csnk1a1;Csnk1a1;Csnk1a1;Csnk1a1;Csnk1a1;Csnk1a1;Csnk1a1;Csnk1a1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,9,93687,ENSMUSG00000024576,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1595,cg07083829,-0.00000653,0.00000404,-1.617048479,0.106884901,loss,ns,-0.0000121,0.00000686,-1.768464736,0.077966665,neg,ns,-0.003906764,0.002009023,-1.944608823,0.05272626,neg,ns,1.277973037,0.000105755,0.0000691,1.530682915,0.126867566,pos,ns,0.882846295,Zfp521,Zfp521_Intron,18,13810245,13810294,13810293,13810294,50,+,AGAAGAAATTTCATGCTTGTCTCCTTTCCAGCTCCCTAACAGCCCACACG,"Intron (Zfp521-201/Zfp521, intron 5 of 7)",18,13687013,13972787,285775,2,Zfp521-201,162493,Zfp521-201;Zfp521-205;Zfp521-204,Zfp521;Zfp521;Zfp521,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,81,225207,ENSMUSG00000024420,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26191,cg09486567,0.0000351,0.00000289,12.15864697,4.47E-28,gain,yes,0.00000868,0.00000491,1.768421979,0.077973822,pos,ns,0.002014561,0.001437351,1.401578606,0.162041511,pos,ns,0.790373717,0.0000709,0.0000494,1.434981192,0.152300558,pos,ns,0.063489601,Ovol2,Ovol2_fiveUTR,2,144332089,144332138,144332089,144332090,50,+,CGCCGGGGAAAAAGTTTCATAAGGTGGAATAGAAAAGGCACCAGGAAACT,Promoter (<=1kb),2,144305175,144332146,26972,2,Ovol2-201,8,Ovol2-202;Ovol2-201;Ovol2-203,Ovol2;Ovol2;Ovol2,-394;0;-763,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,5,107586,ENSMUSG00000037279,conserved gene and region,2,144331878,144332093,216,*,216,23,0.717592593,0.903272727,0.106481482,1.68E-18,CpGisland,TRUE,U3,Pr-B
19382,cg24149135,-0.00000141,0.00000182,-0.772464676,0.440427781,loss,ns,-0.00000547,0.00000309,-1.768409487,0.077975913,neg,ns,-0.00084795,0.000906091,-0.935832518,0.350087861,neg,ns,0.455822947,0.0000359,0.0000312,1.152901998,0.249838811,pos,ns,0.954365692,Spats2,Spats2_Exon,15,99186015,99186064,99186015,99186016,50,+,CGGTATCGAGTTGTAGTTAAAGAAGAGATGGATGCCTCCATTAAGAAAAT,"Exon (Spats2-204/Spats2, exon 8 of 8)",15,99125921,99186022,60102,1,Spats2-204,60094,Spats2-204;Spats2-201;Spats2-205,Spats2;Spats2;Spats2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,72572,ENSMUSG00000051934,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15164,cg06349423,0.00000706,0.00000276,2.558385574,0.010990982,gain,ns,-0.0000083,0.00000469,-1.768388914,0.077979357,neg,ns,0.000207581,0.001374333,0.151041606,0.880041134,pos,ns,0.055497028,0.0000282,0.0000473,0.596352802,0.551374775,pos,ns,0.937404843,Nf1,Nf1_Exon,11,79468805,79468854,79468805,79468806,50,+,CGTATGAAGCAGGGATTTTAGATAAAAAGCCACCACCTAGAATCGAAAGG,"Exon (Nf1-202/Nf1, exon 31 of 57)",11,79339792,79578942,239151,1,Nf1-202,129013,Nf1-202;Nf1-201;Nf1-203;Nf1-204,Nf1;Nf1;Nf1;Nf1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,6,18015,ENSMUSG00000020716,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8803,cg05671661,-0.000000752,0.00000186,-0.404166134,0.686369242,loss,ns,0.00000559,0.00000316,1.76827484,0.077998454,pos,ns,0.001482665,0.0009258,1.601495565,0.110285688,pos,ns,0.957480843,-0.0000236,0.0000318,-0.742441203,0.458382249,neg,ns,0.952923271,Oga,Oga_Intron,19,45763825,45763874,45763825,45763826,50,+,CGCGCTGTGAACATCTGCCGCTGTCCATCCAATAGTAGTAGACACTTGTG,"Intron (Oga-201/Oga, intron 10 of 15)",19,45750259,45783551,33293,2,Oga-201,19677,Oga-201;Oga-204;Oga-203;Oga-206;Oga-205,Oga;Oga;Oga;Oga;Oga,0;0;0;0;19902,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,21,76055,ENSMUSG00000025220,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5211,cg00761619,-0.00000225,0.00000592,-0.379843286,0.704321841,loss,ns,-0.0000178,0.0000101,-1.768099988,0.078027735,neg,ns,-0.002905837,0.002947291,-0.985934884,0.324933949,neg,ns,0.488204912,0.000177271,0.000101357,1.74897648,0.081284785,pos,ns,0.871008367,Ankrd6,Ankrd6_Exon,4,32860340,32860389,32860388,32860389,50,-,GGCGCCCTTGTTGATGAGCTGAACCACATTCTCTGTTTGGCCTTTGTACG,"Exon (Ankrd6-201/Ankrd6, exon 3 of 17)",4,32804035,32923455,119421,2,Ankrd6-201,63066,Ankrd6-201;Ankrd6-203;Ankrd6-204;Ankrd6-202;Ankrd6-205;Ankrd6-206;Ankrd6-208,Ankrd6;Ankrd6;Ankrd6;Ankrd6;Ankrd6;Ankrd6;Ankrd6,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,140577,ENSMUSG00000040183,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8149,cg12201392,-0.000099,0.0000114,-8.672858706,2.41E-16,loss,yes,-0.0000343,0.0000194,-1.767966005,0.078050177,neg,ns,0.032720436,0.005681817,5.758797823,2.04E-08,pos,ns,7.69048966,-0.001244212,0.000195397,-6.367603786,6.91E-10,neg,yes,0.760167331,Zcchc7,Zcchc7_Intron,4,44800153,44800202,44800153,44800154,50,+,CGAGGTTTACCAGTCCAGCTCACCTGTCTCTTTGCATGGATAGTTGAAAT,"Intron (Zcchc7-203/Zcchc7, intron 2 of 8)",4,44756568,44932203,175636,1,Zcchc7-203,43585,Zcchc7-203;Zcchc7-207;Zcchc7-205;Zcchc7-201,Zcchc7;Zcchc7;Zcchc7;Zcchc7,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,27,27,319885,ENSMUSG00000035649,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15009,cg23306187,-0.00000252,0.00000491,-0.513709584,0.607821002,loss,ns,-0.0000147,0.00000834,-1.767900288,0.078061187,neg,ns,-0.001487554,0.0024436,-0.608755053,0.543132624,neg,ns,0.26509411,-0.0000576,0.000084,-0.685191363,0.493735193,neg,ns,0.9170009,Pou4f2,Pou4f2_Promoter,8,78443225,78443274,78443273,78443274,50,-,AGTCTATCCTTACTATTCATAACCACTCAACACTTTAGACAAAGAAAACG,Promoter (6-7kb),8,78433010,78436645,3636,2,Pou4f2-201,-6629,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,6,23,18997,ENSMUSG00000031688,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16764,cg08717553,0.000000313,0.00000269,0.116400964,0.907410142,gain,ns,0.00000809,0.00000457,1.767786733,0.078080214,pos,ns,0.003004032,0.001340007,2.241802862,0.025681239,pos,ns,1.590384025,-0.0000823,0.0000461,-1.786291725,0.075029245,neg,ns,0.935787849,Lrba,Lrba_Intron,3,86474516,86474565,86474516,86474517,50,-,CGTTTCAATGAACTTTTGCCATAAAATTTAAGAGGATTTTAATTGCAAGT,"Intron (Lrba-202/Lrba, intron 37 of 50)",3,86224680,86746712,522033,1,Lrba-202,249836,Lrba-202;Lrba-204;Lrba-201;Lrba-208,Lrba;Lrba;Lrba;Lrba,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,45,80877,ENSMUSG00000028080,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8395,cg22033193,-0.000000369,0.00000343,-0.107620151,0.91436663,loss,ns,0.0000103,0.00000582,1.767738568,0.078088285,pos,ns,0.00638273,0.001704987,3.743564102,0.000216206,pos,ns,3.665132305,-0.000116521,0.0000586,-1.987248948,0.047774585,neg,ns,0.919297517,Zeb2,Zeb2_Intron,2,45087889,45087938,45087937,45087938,50,+,GCAGTTCCCAGGCGGACAAACTTGCATTATGTACGCATAAACAAACAGCG,"Intron (Zeb2-212/Zeb2, intron 3 of 10)",2,44983632,45117395,133764,2,Zeb2-212,29457,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3047,cg04389398,0.0000864,0.0000164,5.278826172,0.000000245,gain,yes,-0.0000491,0.0000278,-1.767274499,0.07816609,neg,ns,0.022506813,0.008147342,2.762473197,0.006079057,pos,ns,2.216163805,-0.00071132,0.000280186,-2.538738053,0.011614139,neg,ns,0.317213939,Orc5,Orc5_threeUTR,5,22486904,22486953,22486952,22486953,50,-,TTAAGAGTAGAACAGATTGTGCTCAAACCCTGCTGTTTATAATTAACACG,3' UTR,5,22486485,22550304,63820,2,Orc5-202,63351,Orc5-202;Orc5-201,Orc5;Orc5,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,2,26429,ENSMUSG00000029012,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
8893,cg27235196,-0.000000765,0.00000128,-0.598212703,0.550134816,loss,ns,0.00000384,0.00000217,1.766755841,0.078253122,pos,ns,0.002331219,0.000636381,3.663245053,0.000292794,pos,ns,3.533437097,-0.0000647,0.0000219,-2.95439473,0.003372749,neg,ns,0.966020386,Gbf1,Gbf1_Exon,19,46271549,46271598,46271597,46271598,50,+,TTCCAGGTAGAAGATTTCGTGGATCCCAATGGCAAGATCTCTCTACAGCG,"Exon (Gbf1-201/Gbf1, exon 25 of 40)",19,46152509,46286510,134002,1,Gbf1-201,119040,Gbf1-201;Gbf1-214;Gbf1-213;Gbf1-215;Gbf1-212;Gbf1-208,Gbf1;Gbf1;Gbf1;Gbf1;Gbf1;Gbf1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,18,107338,ENSMUSG00000025224,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26971,cg18324267,0.0000561,0.0000107,5.260675118,0.000000268,gain,yes,0.000032,0.0000181,1.766711539,0.078260559,pos,ns,0.035719859,0.005303269,6.735441329,7.95E-11,pos,yes,10.09989199,-0.000644482,0.000182379,-3.533753003,0.000472092,neg,ns,0.879233902,Acbd6,Acbd6_Intron,1,155636781,155636830,155636781,155636782,50,+,CGGATTGAAATTCATAACTTAATTGAGGTCAAAGTCCCGGTCTGGGAGAA,"Intron (Acbd6-201/Acbd6, intron 6 of 7)",1,155558122,155691330,133209,1,Acbd6-201,78659,Acbd6-201;Acbd6-206,Acbd6;Acbd6,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,7,72482,ENSMUSG00000033701,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11300,cg15031516,-0.00000492,0.00000104,-4.741728055,0.00000324,loss,ns,0.00000311,0.00000176,1.76664822,0.078271191,pos,ns,0.001060419,0.000516429,2.053367575,0.04087569,pos,ns,1.388534905,-0.0000175,0.0000178,-0.987596094,0.324120693,neg,ns,0.037938503,Trub1,Trub1_Exon,19,57453120,57453169,57453120,57453121,50,+,CGTGTTCGCCGTGCACAAGCCCAAAGGGCCCACTTCAGCCGAGCTGCTGA,Promoter (<=1kb),19,57452912,57491005,38094,1,Trub1-202,208,Trub1-202;Trub1-201;Trub1-203;Trub1-204,Trub1;Trub1;Trub1;Trub1,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,72133,ENSMUSG00000025086,conserved gene and region,19,57453018,57453209,192,*,192,16,0.666666667,0.75,0.083333333,2.99E-11,CpGisland,TRUE,U1,Pr-A
8936,cg22527583,-0.00001,0.00000435,-2.305970896,0.021771858,loss,ns,0.0000131,0.00000739,1.766640107,0.078272553,pos,ns,0.00139205,0.002164859,0.643021225,0.520685659,pos,ns,0.283424384,-0.0000882,0.0000744,-1.184197734,0.237241964,neg,ns,0.897058934,Gm13469,Gm13469_Intergenic_downstream,2,46341329,46341378,46341329,46341330,50,-,CGTGACCTTTGAAAATGCTCTCCAGCTTGATTAAAGATGTATTAAATTTG,Distal Intergenic,2,46406220,46406569,350,2,Gm13469-201,65240,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,27,383690,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27260,cg17633063,-0.0000655,0.0000156,-4.211136209,0.0000333,loss,ns,0.0000467,0.0000264,1.766580778,0.078282516,pos,ns,-0.017059704,0.007742025,-2.203519717,0.028293213,neg,ns,1.548317729,0.000383045,0.000266248,1.438680794,0.151249824,pos,ns,0.588217289,Ptprt,Ptprt_Intron,2,162377657,162377706,162377705,162377706,50,+,CTTCACACCATTACATCTAATTCAGTAAGCAAAAATAATGGCAGGGCACG,"Intron (Ptprt-203/Ptprt, intron 1 of 30)",2,161521990,162661147,1139158,2,Ptprt-203,283441,Ptprt-203;Ptprt-204;Ptprt-202;Ptprt-201,Ptprt;Ptprt;Ptprt;Ptprt,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,4,19281,ENSMUSG00000053141,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
990,cg10280412,0.000013,0.0000112,1.157676243,0.247887354,gain,ns,-0.0000337,0.0000191,-1.766558823,0.078286203,neg,ns,-0.002923326,0.005594105,-0.522572592,0.601644968,neg,ns,0.220659711,0.000221444,0.000192381,1.151069736,0.250590599,pos,ns,0.226503851,Syt7,Syt7_threeUTR,19,10422408,10422457,10422408,10422409,50,-,CGTCGTTAACCCTTCGTTGTCCTGTGGGATAGAGTTGGAGGTGGCTGCCC,3' UTR,19,10389090,10448444,59355,1,Syt7-201,33318,Syt7-201;Syt7-208;Syt7-206;Syt7-203;Syt7-202;Syt7-210;Syt7-211;Syt7-204;Syt7-205;Syt7-207;Syt7-209;Syt7-213;Syt7-214;Syt7-215;Syt7-212,Syt7;Syt7;Syt7;Syt7;Syt7;Syt7;Syt7;Syt7;Syt7;Syt7;Syt7;Syt7;Syt7;Syt7;Syt7,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,9,10,54525,ENSMUSG00000024743,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
3,cg23012887,-0.00000133,0.00000172,-0.768701473,0.442655773,loss,ns,0.00000518,0.00000293,1.766018327,0.078377015,pos,ns,0.002489197,0.000858498,2.899480368,0.004004723,pos,ns,2.397427486,-0.0000675,0.0000295,-2.285372266,0.022965926,neg,ns,0.964543645,Scaf8,Scaf8_Exon,17,3159256,3159305,3159304,3159305,50,+,GCACCCAGATTTAGTAATAACATCATTAGCACTTTCCAGAATTTATATCG,"Exon (Scaf8-201/Scaf8, exon 4 of 20)",17,3114979,3198859,83881,1,Scaf8-201,44277,Scaf8-201;Scaf8-202,Scaf8;Scaf8,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,4,106583,ENSMUSG00000046201,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
183,cg09219491,-0.00000387,0.00000121,-3.190009165,0.001568287,loss,ns,0.00000364,0.00000206,1.765994804,0.078380969,pos,ns,0.000737222,0.000603714,1.221143194,0.222959721,pos,ns,0.651773589,-0.00000598,0.0000208,-0.287850041,0.773653874,neg,ns,0.055742282,Casd1,Casd1_Exon,6,4601174,4601223,4601222,4601223,50,-,GGCTCTGGCCTACAACCTGGGCAAGCGGGAGATCAACCACTACTTCAGCG,Promoter (<=1kb),6,4601203,4621132,19930,1,Casd1-202,0,Casd1-201;Casd1-204;Casd1-203;Casd1-202,Casd1;Casd1;Casd1;Casd1,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,6,213819,ENSMUSG00000015189,conserved gene and region,6,4600919,4601684,766,*,766,100,0.791122715,0.834786399,0.130548303,8.09E-89,CpGisland,TRUE,U1,Pr-A
1176,cg21259172,0.0000358,0.0000107,3.355967685,0.000889277,gain,ns,0.000032,0.0000181,1.765600475,0.07844728,pos,ns,0.016498887,0.005309886,3.107201455,0.002063557,pos,ns,2.68538343,-0.000492698,0.000182607,-2.698137706,0.007354802,neg,ns,0.776125917,Gm14512,Gm14512_Intergenic_downstream,X,11998126,11998175,11998126,11998127,50,+,CGTTCAAGTAATTTCTCTGCGAACACAAGATGGCAGCCTTAAATAAATGC,Distal Intergenic,20,11984468,11984697,230,1,Gm14512-201,13658,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,22,22,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21827,cg27101921,-0.00000831,0.00000324,-2.566295392,0.010748657,loss,ns,0.00000971,0.0000055,1.76556203,0.078453747,pos,ns,0.000512646,0.001611649,0.318088086,0.750632293,pos,ns,0.124572756,-0.00000451,0.0000554,-0.081404065,0.935173147,neg,ns,0.914960383,Lmo1,Lmo1_Intron,7,109221091,109221140,109221139,109221140,50,-,TGTTTTAATAAACATAAACCGGGTAATAATAAAGTCATAATAAGCCCGCG,"Intron (Gm45024-201/Gm45024-201, intron 2 of 2)",7,109138675,109175207,36533,2,Lmo1-202,-45933,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,66,109594,ENSMUSG00000036111,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9411,cg10953333,-0.0000402,0.00000941,-4.273183555,0.0000257,loss,ns,0.0000282,0.000016,1.765516725,0.078461369,pos,ns,0.000364732,0.004681912,0.077902256,0.937956062,pos,ns,0.027817505,-0.0000368,0.000161011,-0.228299192,0.81956417,neg,ns,0.87303414,Otx2,Otx2_Intron,14,48672205,48672254,48672253,48672254,50,+,AGTCCATCAATTGTAGCCATATTTAAGAATCAATATAAAGTAATCCTTCG,"Intron (Otx2os1-207/Otx2os1-207, intron 2 of 2)",14,48657851,48673819,15969,2,Otx2-210,1565,Otx2-209;Otx2-210;Otx2-202;Otx2-208;Otx2-207;Otx2-205;Otx2-211,Otx2;Otx2;Otx2;Otx2;Otx2;Otx2;Otx2,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,15,18424,ENSMUSG00000021848,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
24731,cg16111242,0.0000608,0.00000635,9.583876707,3.18E-19,gain,yes,-0.000019,0.0000108,-1.765079726,0.07853492,neg,ns,-0.007257242,0.003159809,-2.296734301,0.022300405,neg,ns,1.651687258,0.00016441,0.000108666,1.512991839,0.131300527,pos,ns,0.766445748,Tspan9,Tspan9_Intron,6,128028661,128028710,128028709,128028710,50,-,TTCAAATGTGAGCAGAGACAAAGCTGGCTCAGAAGACTTAACTCTGCCCG,"Intron (Tspan9-203/Tspan9, intron 2 of 7)",6,127961396,128143563,182168,2,Tspan9-203,114853,Tspan9-203;Tspan9-202;Tspan9-201;Tspan9-204;Tspan9-211;Tspan9-209;Tspan9-208;Tspan9-207;Tspan9-206,Tspan9;Tspan9;Tspan9;Tspan9;Tspan9;Tspan9;Tspan9;Tspan9;Tspan9,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,8,109246,ENSMUSG00000030352,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2552,cg26258853,-0.00000465,0.00000128,-3.635765448,0.000324408,loss,ns,0.00000384,0.00000217,1.764995025,0.078549182,pos,ns,0.001562557,0.000636591,2.4545688,0.014654749,pos,ns,1.834021609,-0.0000457,0.0000219,-2.087132259,0.037692712,neg,ns,0.967681396,Ppp3cb,Ppp3cb_Exon,14,20501608,20501657,20501656,20501657,50,+,CCCTTTGCCTCTTCAAAACTGCAGATTCTATGTGGTGGAGAGAATCCTCG,"Exon (Ppp3cb-202/Ppp3cb, exon 14 of 14)",14,20499364,20546573,47210,2,Ppp3cb-202,44916,Mss51-201;Ppp3cb-202;Ppp3cb-205;Ppp3cb-201;Ppp3cb-208,Mss51;Ppp3cb;Ppp3cb;Ppp3cb;Ppp3cb,-4707;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,10,19056,ENSMUSG00000021816,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25715,cg04651121,-0.000027,0.00000998,-2.702033579,0.007271169,loss,ns,0.0000299,0.0000169,1.764617565,0.078612766,pos,ns,0.001254711,0.00496474,0.252724386,0.800648696,pos,ns,0.096557999,-0.000113839,0.000170737,-0.666751072,0.505427086,neg,ns,0.733384438,Lmo3,Lmo3_Exon,6,138580650,138580699,138580698,138580699,50,+,GGCGCACAAAAGAAAACCTCATCACCAAGGGAAACTAATCCACCGGTGCG,"Exon (B230110G15Rik-201/B230110G15Rik-201, exon 1 of 4)",6,138362918,138581968,219051,2,Lmo3-204,1269,Lmo3-204,Lmo3,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,38,109593,ENSMUSG00000030226,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22247,cg14730452,-0.0000009,0.00000375,-0.239740668,0.810689746,loss,ns,-0.0000113,0.00000638,-1.764607669,0.078614434,neg,ns,-0.001568977,0.00186849,-0.839703131,0.401721966,neg,ns,0.396074421,0.0000371,0.0000643,0.577778146,0.563833337,pos,ns,0.086073009,Emc4,Emc4_Exon,2,112367418,112367467,112367418,112367419,50,-,CGGTCTGTCTCTTGCACGCTGGTATCAGGCACTTGCTTGTCCAAGTAACC,Promoter (<=1kb),2,112363011,112368027,5017,2,Emc4-201,560,Emc4-201;Emc4-202;Gm21985-201;Slc12a6-201;Slc12a6-202;Slc12a6-207,Emc4;Emc4;Gm21985;Slc12a6;Slc12a6;Slc12a6,0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,68032,ENSMUSG00000027131,conserved gene and region,2,112367321,112367512,192,*,192,11,0.567708333,0.724776939,0.057291667,0.00000315,CpGisland,TRUE,U1,Pr-A
8014,cg07151295,0.0000283,0.00000413,6.865881915,3.61E-11,gain,yes,-0.0000124,0.00000701,-1.764601603,0.078615456,neg,ns,0.001742421,0.002053224,0.848626683,0.396743862,pos,ns,0.401489783,0.0000362,0.0000706,0.512033597,0.608992071,pos,ns,0.101731493,Pax2,Pax2_Intergenic_upstream,19,44684046,44684095,44684094,44684095,50,-,AATGACTGTGTCAGCTTCTATTTACTCCTGACAGGATCGCCGGGGGCACG,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-71999,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,19,44684083,44684169,87,*,87,12,0.643678161,1.338461539,0.137931035,3.16E-11,CpGisland,TRUE,U13,Hc-P
2095,cg16978019,0.00000304,0.00000171,1.778115915,0.076364933,gain,ns,0.00000512,0.0000029,1.764484717,0.078635155,pos,ns,0.00236903,0.000849844,2.787604732,0.00563772,pos,ns,2.248896508,-0.0000717,0.0000292,-2.453765987,0.014686864,neg,ns,0.04611621,Skida1,Skida1_Exon,2,18048149,18048198,18048197,18048198,50,+,AACTCCTCCAGATCGCAGTGGTGCTTCTTCACTTTCAGATGATCCATGCG,Promoter (<=1kb),2,18044083,18049051,4969,2,Skida1-202,853,Skida1-205;Skida1-202;Skida1-201;Skida1-203;Skida1-204,Skida1;Skida1;Skida1;Skida1;Skida1,0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,31,72668,ENSMUSG00000054074,conserved gene and region,2,18047779,18048218,440,*,440,50,0.640909091,1.121019108,0.113636364,3.03E-41,CpGisland,TRUE,U1,Pr-A
3289,cg25580441,-0.00000177,0.00000127,-1.39824355,0.163039463,loss,ns,0.0000038,0.00000215,1.764478536,0.078636197,pos,ns,0.001390898,0.000630217,2.207014179,0.028045609,pos,ns,1.552135123,-0.0000337,0.0000217,-1.553328386,0.121364988,neg,ns,0.974511221,Usp34,Usp34_Exon,11,23474239,23474288,23474287,23474288,50,+,AACCATTTTATCATCTTTAACCTTCAGGGCAAAGATGACGTTTATGATCG,"Exon (Usp34-208/Usp34, exon 75 of 80)",11,23306895,23490560,183666,1,Usp34-208,167344,Usp34-208;Usp34-205;Usp34-202,Usp34;Usp34;Usp34,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,13,14,17847,ENSMUSG00000056342,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22056,cg07024223,-0.0000539,0.0000163,-3.306295587,0.001056406,loss,ns,-0.0000488,0.0000277,-1.764386569,0.078651699,neg,ns,0.016667235,0.008111038,2.054883094,0.040728066,pos,ns,1.390106215,-0.001036305,0.000278938,-3.715180375,0.000240807,neg,ns,0.480065578,Fbrsl1,Fbrsl1_Exon,5,110432122,110432171,110432122,110432123,50,+,CGGCCCCCCTTCTGGGGAGCACACCTGCATGGAAGAAAGAGCACGTGTCC,"Exon (Fbrsl1-204/Fbrsl1, exon 2 of 2)",5,110361754,110448503,86750,2,Fbrsl1-202,16332,Fbrsl1-202;Fbrsl1-205;Fbrsl1-203;Fbrsl1-204;Fbrsl1-207,Fbrsl1;Fbrsl1;Fbrsl1;Fbrsl1;Fbrsl1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,2,381668,ENSMUSG00000043323,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7195,cg07511181,-0.000024,0.00000632,-3.804395801,0.000171237,loss,ns,0.0000189,0.0000107,1.764211168,0.078681272,pos,ns,0.003656775,0.003145995,1.162358769,0.245983824,pos,ns,0.609093451,-0.000346039,0.00010819,-3.198420982,0.001524677,neg,ns,0.111673709,Slit1,Slit1_threeUTR,19,41600614,41600663,41600614,41600615,50,+,CGCGTGGTCTGGCAGATGGCATAGCCCCTCTGGACCTGGTGAAAGTCCCG,3' UTR,19,41600257,41743492,143236,2,Slit1-203,142829,Slit1-203;Slit1-201;Slit1-202;Slit1-204,Slit1;Slit1;Slit1;Slit1,0;0;0;7867,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,4,20562,ENSMUSG00000025020,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26123,cg16603464,0.0000372,0.0000134,2.780116306,0.005766086,gain,ns,-0.0000401,0.0000227,-1.763883932,0.07873647,neg,ns,0.013587155,0.006657405,2.040908567,0.04210666,pos,ns,1.37564921,-0.00050602,0.000228948,-2.210200547,0.027821474,neg,ns,0.244134792,Sox5,Sox5_Intron,6,144056967,144057016,144057015,144057016,50,-,ATTGGCAACAGGTCTCAGTGTTCCTGGCTTTGAGCTGTGAACAAGGGTCG,"Intron (Sox5-201/Sox5, intron 3 of 14)",6,143828425,144209480,381056,2,Sox5-201,152464,Sox5-201;Sox5-214;Sox5-205;Sox5-202;Sox5-209;Sox5-207;Sox5-210,Sox5;Sox5;Sox5;Sox5;Sox5;Sox5;Sox5,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,71,20678,ENSMUSG00000041540,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22219,cg10974112,0.00000685,0.0000134,0.512533578,0.608642611,gain,ns,0.00004,0.0000227,1.763743504,0.078760166,pos,ns,0.013012253,0.006651603,1.956258216,0.051332431,pos,ns,1.289608167,-0.000495407,0.000228748,-2.165730656,0.031093977,neg,ns,0.718653457,Gm26897,Gm26897_Intergenic_downstream,5,111958178,111958227,111958178,111958179,50,+,CGAGCGATTTTGTAATTTCATGCTTGTGTATGATAATTTTATGCTGTCCT,Distal Intergenic,5,111733924,111734574,651,1,Gm26897-201,224254,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,11,23,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
403,cg06071218,-0.0000032,0.00000163,-1.961368881,0.050730803,loss,ns,0.00000488,0.00000277,1.763716899,0.078764657,pos,ns,0.002560082,0.000810866,3.15722161,0.001749516,pos,ns,2.757081999,-0.0000803,0.0000279,-2.880605331,0.004245749,neg,ns,0.053919459,Zdhhc14,Zdhhc14_Exon,17,5493461,5493510,5493461,5493462,50,+,CGGCGGGCCCATGAAAGACTGCGAGTACAGCCAGATCAGCACCCACAGCT,Promoter (<=1kb),17,5492557,5753811,261255,1,Zdhhc14-201,904,Zdhhc14-201,Zdhhc14,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,8,224454,ENSMUSG00000034265,conserved gene and region,17,5493294,5493483,190,*,190,30,0.784210526,1.047794118,0.157894737,7.08E-30,CpGisland,TRUE,U1,Pr-A
10936,cg18459937,0.000101593,0.0000189,5.369384494,0.000000155,gain,yes,-0.0000567,0.0000321,-1.763375265,0.078822333,neg,ns,0.005235394,0.009417049,0.555948498,0.57864709,pos,ns,0.237586227,-0.000339561,0.000323852,-1.048507116,0.295221782,neg,ns,0.514350857,Tcf7l2,Tcf7l2_Intron,19,55891887,55891936,55891935,55891936,50,-,TCATCAAGTTCACTGGTGTCTTAATAGCAGATCAATAAGTTTCAAAGTCG,"Intron (Tcf7l2-213/Tcf7l2, intron 4 of 13)",19,55741820,55933229,191410,1,Tcf7l2-213,150067,Tcf7l2-213;Tcf7l2-201;Tcf7l2-208;Tcf7l2-211;Tcf7l2-212;Tcf7l2-206;Tcf7l2-204;Tcf7l2-205;Tcf7l2-222;Tcf7l2-215;Tcf7l2-214;Tcf7l2-207;Tcf7l2-202;Tcf7l2-209;Tcf7l2-210;Tcf7l2-217;Tcf7l2-220;Tcf7l2-218;Tcf7l2-203;Tcf7l2-216,Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,55,88,21416,ENSMUSG00000024985,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7417,cg14422733,0.0000441,0.00000371,11.88982026,4.11E-27,gain,yes,-0.0000111,0.0000063,-1.763369236,0.078823351,neg,ns,0.002701911,0.001844774,1.464629312,0.144035458,pos,ns,0.841530583,0.0000815,0.0000634,1.2844597,0.19994018,pos,ns,0.059480809,Nr2e1,Nr2e1_Intron,10,42579749,42579798,42579749,42579750,50,-,CGCGGCAGCACCTGCCTATAGAGCCACCAGTGACCCGTCAAAAAGAGTAG,"Intron (Nr2e1-201/Nr2e1, intron 1 of 8)",10,42561963,42583632,21670,2,Nr2e1-201,3834,Nr2e1-201;Nr2e1-203;Nr2e1-204;Ostm1-204;Ostm1-202;Ostm1-203,Nr2e1;Nr2e1;Nr2e1;Ostm1;Ostm1;Ostm1,0;0;0;-4024;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,11,21907,ENSMUSG00000019803,conserved gene and region,10,42579451,42579891,441,*,441,35,0.68707483,0.680555556,0.079365079,2.77E-23,CpGisland,TRUE,U3,Pr-B
22694,cg27482810,-0.00000395,0.00000236,-1.675068269,0.094929225,loss,ns,0.00000706,0.000004,1.763311597,0.078833086,pos,ns,0.002465416,0.001173024,2.101759721,0.036381006,pos,ns,1.439125297,-0.0000889,0.0000403,-2.204042261,0.028256068,neg,ns,0.957661856,BC052040,BC052040_Intron,2,115725549,115725598,115725597,115725598,50,+,TAAACAGCAATTAATCTCATTTTAGTACAATTTTCTCGTTTCTGAAGTCG,"Intron (BC052040-203/BC052040, intron 10 of 10)",2,115581716,115778768,197053,1,BC052040-203,143833,BC052040-203;BC052040-201,BC052040;BC052040,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,37,49,399568,ENSMUSG00000040282,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
876,cg09566714,-0.0000123,0.00000738,-1.668487579,0.09622862,loss,ns,0.0000221,0.0000125,1.763258881,0.07884199,pos,ns,0.010474976,0.003674702,2.850564924,0.004656726,pos,ns,2.331919305,-0.000381609,0.000126373,-3.019714848,0.00274045,neg,ns,0.871486035,Zbtb10,Zbtb10_Exon,3,9280773,9280822,9280821,9280822,50,-,AAGAAGATCTTCATGTTAGCAGCCAGTGTTGGAATAAGACATGGATCTCG,"Exon (Zbtb10-201/Zbtb10, exon 6 of 6)",3,9250602,9285333,34732,1,Zbtb10-201,30171,Zbtb10-201,Zbtb10,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,9,229055,ENSMUSG00000069114,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17455,cg08620301,0.000021,0.00000785,2.676976726,0.007824392,gain,ns,0.0000235,0.0000133,1.763147846,0.078860747,pos,ns,-0.002163668,0.003909411,-0.553451164,0.580353446,neg,ns,0.236307432,0.0000883,0.000134444,0.656981358,0.511680342,pos,ns,0.826858595,Nrxn3,Nrxn3_threeUTR,12,90331621,90331670,90331669,90331670,50,-,GTCCATGACCTCTGAGGCGGGGTTACCTTGCTTGTCGGACCAAGGCAGCG,3' UTR,12,88722986,90332878,1609893,1,Nrxn3-213,1608635,Nrxn3-213;Nrxn3-208;Nrxn3-205;Nrxn3-201;Nrxn3-210;Nrxn3-214;Nrxn3-203;Nrxn3-202,Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,14,39,18191,ENSMUSG00000066392,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10254,cg01566077,-0.00000689,0.00000246,-2.797590511,0.005470575,loss,ns,-0.00000737,0.00000418,-1.763015627,0.078883087,neg,ns,-0.002821865,0.001225063,-2.303445011,0.021915298,neg,ns,1.659252625,0.00000317,0.0000421,0.075212633,0.940094046,pos,ns,0.896245066,Mettl3,Mettl3_threeUTR,14,52297591,52297640,52297639,52297640,50,+,TCAGCCATCACAACTGCAAACTTGCCCAAGATACTGACGTCCAGGTAGCG,3' UTR,14,52294841,52305128,10288,2,Mettl3-201,7488,Mettl3-201;Mettl3-212;Mettl3-209;Mettl3-213;Mettl3-210;Mettl3-206;Mettl3-204;Mettl3-207;Mettl3-203;Mettl3-202;Mettl3-211;Mettl3-208;Mettl3-214;Mettl3-205;Tox4-201,Mettl3;Mettl3;Mettl3;Mettl3;Mettl3;Mettl3;Mettl3;Mettl3;Mettl3;Mettl3;Mettl3;Mettl3;Mettl3;Mettl3;Tox4,0;0;-922;0;0;0;0;0;0;0;0;7347;7467;7459;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,3,56335,ENSMUSG00000022160,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6922,cg03504294,-0.0000224,0.00000839,-2.67345904,0.00790502,loss,ns,0.0000251,0.0000143,1.762908887,0.078901126,pos,ns,0.004745619,0.004176999,1.13613128,0.256779165,pos,ns,0.590440218,-0.000283938,0.000143647,-1.976642334,0.048968076,neg,ns,0.704123167,Rims2,Rims2_Exon,15,39585565,39585614,39585565,39585566,50,-,CGTATTTGTCAATCTGTGTTAACAGTATCGATCAGGATGGGATCCTCATA,"Exon (Rims2-202/Rims2, exon 21 of 27)",15,39198332,39681940,483609,1,Rims2-202,387233,Rims2-202;Rims2-205;Rims2-201;Rims2-206;Rims2-208;Rims2-209,Rims2;Rims2;Rims2;Rims2;Rims2;Rims2,0;0;0;0;0;-1093,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,16,19,116838,ENSMUSG00000037386,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23596,cg16948502,0.000000315,0.00000601,0.052348223,0.958284945,gain,ns,-0.000018,0.0000102,-1.762831166,0.078914263,neg,ns,-0.003803185,0.002991144,-1.271482011,0.204510347,neg,ns,0.689284715,-0.000143267,0.000102865,-1.392768056,0.16468799,neg,ns,0.764045989,Gm3508,Gm3508_Intergenic_downstream,1,119238690,119238739,119238738,119238739,50,-,GGAAGTGTCACTGTCAATCAGGGCGCTGACCCATCTAATCCAGCCTCCCG,Distal Intergenic,1,119241962,119242753,792,2,Gm3508-201,4063,Gm3508-201,Gm3508,4014,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,8,100041778,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17786,cg05952583,-0.00000781,0.00000381,-2.050166083,0.04118904,loss,ns,0.0000114,0.00000647,1.762667236,0.078941977,pos,ns,0.003408462,0.00189674,1.797010783,0.073307168,pos,ns,1.13485356,-0.000172835,0.0000652,-2.649674525,0.008470077,neg,ns,0.905514918,Son,Son_Exon,16,91664992,91665041,91664992,91664993,50,-,CGATGCAATTCACTTTGTGGAACCAAGCCACAAAGTGAAAAGCATCGAAT,"Exon (Son-204/Son, exon 7 of 7)",16,91647506,91679207,31702,1,Son-203,17486,Son-203;Son-204;Son-202;Son-208;Son-201;Son-205;Son-212;Son-207,Son;Son;Son;Son;Son;Son;Son;Son,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,31,20658,ENSMUSG00000022961,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24787,cg17069848,0.0000519,0.00000854,6.071454939,3.70E-09,gain,yes,-0.0000256,0.0000145,-1.762548654,0.078962029,neg,ns,0.006242714,0.004251448,1.468373624,0.1430167,pos,ns,0.844613246,-0.000641599,0.000146207,-4.3882961,0.0000157,neg,ns,0.101505378,Smarcc2,Smarcc2_Promoter,10,128458472,128458521,128458520,128458521,50,+,ACAGGATTCGAACCTGTGCGGGGAAACCCCATTGGATTTCGAGTCCAACG,Promoter (<=1kb),10,128459248,128490482,31235,1,Smarcc2-205,-727,Smarcc2-205;Smarcc2-201;Smarcc2-202;Smarcc2-203;Smarcc2-206,Smarcc2;Smarcc2;Smarcc2;Smarcc2;Smarcc2,0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,6,16,68094,ENSMUSG00000025369,conserved gene and region,10,128458453,128458841,389,*,389,38,0.645244216,0.938658877,0.097686375,9.20E-29,CpGisland,TRUE,U2,Pr-W
15202,cg25164800,-0.0000138,0.00000989,-1.39299608,0.164619087,loss,ns,0.0000296,0.0000168,1.762447408,0.078979154,pos,ns,0.003607829,0.004922342,0.732949681,0.464142977,pos,ns,0.333348217,-0.000325702,0.000169279,-1.924053255,0.055263215,neg,ns,0.328587013,Rhcg,Rhcg_Exon,7,79578655,79578704,79578703,79578704,50,-,TTCTTCTTCTTTCTGGCAACTAATGGACTCCTTAAATAGCAAAAATTGCG,"Exon (Gm45168-202/Gm45168-202, exon 1 of 2)",7,79593369,79594929,1561,2,Rhcg-203,16274,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,9,56315,ENSMUSG00000030549,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
11906,cg19889017,0.0000952,0.0000109,8.771991241,1.19E-16,gain,yes,-0.0000325,0.0000184,-1.762169859,0.079026113,neg,ns,0.007824716,0.005402157,1.448442786,0.148503936,pos,ns,0.828262034,-0.000273359,0.00018578,-1.471413839,0.142193609,neg,ns,0.162116663,Tank,Tank_Intergenic_downstream,2,61656371,61656420,61656371,61656372,50,+,CGAGGTGTCAAAACTGCCAGGAGCAAGAAGGTGATAGCAATCAGGGGTGA,Distal Intergenic,2,61643831,61649977,6147,1,Tank-211,12540,Tank-205;Tank-201;Tank-206;Tank-203;Tank-204;Tank-202;Tank-208,Tank;Tank;Tank;Tank;Tank;Tank;Tank,0;0;0;0;0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,17,21353,ENSMUSG00000064289,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
10154,cg02248486,0.000214383,0.0000209,10.27648321,1.64E-21,gain,yes,-0.0000624,0.0000354,-1.762015606,0.079052221,neg,ns,0.035324602,0.010382981,3.402163816,0.000756267,pos,ns,3.121324894,-0.001310598,0.00035707,-3.670423414,0.000285027,neg,ns,0.375091426,Gm28308,Gm28308_fiveUTR,6,52204320,52204369,52204320,52204321,50,-,CGCAAAATGAGTTTACAAAATAAGAGCTCATTTGTTTTTTGATATGTGTG,5' UTR,6,52163359,52213339,49981,2,Gm28308-201,8970,Gm28308-201;Hoxa3-201;Hoxa3-203;Hoxa5-201;Hoxa6-201,Gm28308;Hoxa3;Hoxa3;Hoxa5;Hoxa6,0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,21,103,,NA,mapped to different genes,6,52203658,52204321,664,*,664,70,0.680722892,0.922222222,0.105421687,5.32E-55,CpGisland,TRUE,U3,Pr-B
14089,cg13194536,0.0000506,0.0000196,2.575145753,0.010483184,gain,ns,-0.0000588,0.0000334,-1.761797599,0.079089132,neg,ns,0.026891372,0.009771832,2.751927483,0.00627339,pos,ns,2.20249771,-0.000808412,0.000336052,-2.405612649,0.016730805,neg,ns,0.516406843,Gm27233,Gm27233_Intergenic_upstream,9,74656650,74656699,74656650,74656651,50,-,CGATGGGAAAATATTTTTAGTCTCTAACTGAACGATATGTTTTGACAAGG,Distal Intergenic,9,74709262,74709568,307,1,Gm27233-201,-52612,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,4,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18350,cg02221620,0.0000224,0.0000125,1.787403344,0.074849128,gain,ns,-0.0000375,0.0000213,-1.761745997,0.079097871,neg,ns,-0.003949586,0.006227698,-0.634196786,0.526420106,neg,ns,0.278667532,0.0000678,0.00021417,0.316372604,0.751932632,pos,ns,0.284717785,Otp,Otp_Promoter,13,94869035,94869084,94869083,94869084,50,-,TTATTTGCAGCCATAATTATATTTCTTTCGGCTAAATCACGGTTTAATCG,Promoter (6-7kb),13,94875602,94885130,9529,1,Otp-201,-6567,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,27,34,18420,ENSMUSG00000021685,conserved gene and region,13,94869063,94869234,172,*,172,30,0.819767442,1.155913979,0.174418605,1.73E-31,CpGisland,TRUE,U3,Pr-B
8765,cg13448365,0.0000356,0.00000955,3.723295535,0.000233517,gain,ns,-0.0000286,0.0000162,-1.761737173,0.079099365,neg,ns,0.006938651,0.004755619,1.459042661,0.145565863,pos,ns,0.836940461,-0.000264301,0.000163545,-1.616070223,0.107096315,neg,ns,0.771976737,Gm12412,Gm12412_Intergenic_downstream,4,45723679,45723728,45723679,45723680,50,+,CGGCCAAGATTAAATATGTTTGTCACAGTCAAGTGAACTAATCACTTTAT,Distal Intergenic,4,45776882,45777209,328,2,Gm12412-201,53481,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,2,100040580,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8066,cg23925685,0.0000142,0.00000739,1.923277659,0.055360907,gain,ns,0.0000221,0.0000126,1.761378222,0.079160177,pos,ns,0.009298743,0.003680486,2.526498434,0.012018084,pos,ns,1.920164781,-0.0000135,0.000126572,-0.106701335,0.91509494,neg,ns,0.200012831,Pax5,Pax5_Promoter,4,44710789,44710838,44710837,44710838,50,+,AGATCATGTCCTGTTCTCGCCAACATCACAAGATGTCCCCAGACACGCCG,Promoter (<=1kb),4,44524757,44710487,185731,2,Pax5-201,-302,Pax5-201;Pax5-202;Pax5-203;Pax5-204;Pax5-205;Pax5-207;Pax5-206;Pax5-209;Pax5-210;Pax5-212;Pax5-213;Pax5-214;Pax5-215,Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5,0;0;0;0;0;0;0;0;0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,10,45,18507,ENSMUSG00000014030,conserved gene and region,4,44710639,44710987,349,*,349,27,0.601719198,0.855004083,0.077363897,8.51E-18,CpGisland,TRUE,NA,NRS
15407,cg03845687,-0.00000544,0.00000423,-1.285453486,0.199593326,loss,ns,-0.0000127,0.00000718,-1.761359294,0.079163385,neg,ns,0.002354374,0.002104609,1.118674933,0.264144935,pos,ns,0.578157713,-0.000561261,0.0000724,-7.754653546,1.29E-13,neg,yes,0.900275983,Dot1l,Dot1l_threeUTR,10,80773715,80773764,80773715,80773716,50,-,CGCGAGTTCAGGAAGTGGATGAAATGGTATGGAAAAAAGCATGCAGAATA,3' UTR,10,80755206,80795461,40256,1,Dot1l-201,18509,Dot1l-201;Dot1l-202;Dot1l-206,Dot1l;Dot1l;Dot1l,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,3,208266,ENSMUSG00000061589,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22553,cg00934241,-0.0000172,0.00000705,-2.443130494,0.015118234,loss,ns,-0.0000211,0.000012,-1.76126093,0.079180056,neg,ns,-0.000723141,0.003510423,-0.205998327,0.836927437,neg,ns,0.077312195,-0.000250306,0.000120723,-2.073389616,0.038961701,neg,ns,0.715571483,Syn2,Syn2_Promoter,6,115124862,115124911,115124862,115124863,50,+,CGCCAAGAAATGAGGGTGCTGGCAGACAGCCTACAGCCAGCCTGCTTCAA,Promoter (9-10kb),6,115134902,115275091,140190,1,Syn2-205,-9991,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,3,20965,ENSMUSG00000009394,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3583,cg16295770,0.0000013,0.00000592,0.21887653,0.826890261,gain,ns,-0.0000177,0.0000101,-1.761116303,0.079204574,neg,ns,-0.003756772,0.002947469,-1.274575691,0.20341402,neg,ns,0.691619118,0.00013343,0.000101363,1.316351826,0.18902842,pos,ns,0.134859204,Smarcd3,Smarcd3_Exon,5,24601781,24601830,24601829,24601830,50,+,CACCCCATGGACCAGAAACTCAAAAAGTTTGCTTTTCGTGGCTTTGCGCG,Promoter (<=1kb),5,24590818,24601976,11159,2,Smarcd3-205,146,Smarcd3-205;Smarcd3-201;Smarcd3-208;Smarcd3-207;Smarcd3-203;Smarcd3-206;Smarcd3-204;Smarcd3-202,Smarcd3;Smarcd3;Smarcd3;Smarcd3;Smarcd3;Smarcd3;Smarcd3;Smarcd3,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,66993,ENSMUSG00000028949,conserved gene and region,5,24601817,24601874,58,*,58,9,0.74137931,1.12987013,0.155172414,6.08E-09,CpGisland,TRUE,U3,Pr-B
1858,cg20460303,0.000000138,0.00000312,0.044364082,0.964642755,gain,ns,-0.00000932,0.00000529,-1.760920286,0.079237813,neg,ns,-0.001648375,0.001550636,-1.063031192,0.288595183,neg,ns,0.539710922,-0.00000503,0.0000533,-0.094392717,0.924858183,neg,ns,0.921744256,Gli3,Gli3_Intron,13,15659401,15659450,15659401,15659402,50,+,CGGCACTGATGGAAATTCTTTAGGTGGCATTCTGGATGAACCAAGCTTTC,"Intron (Gli3-202/Gli3, intron 7 of 11)",13,15463235,15715091,251857,1,Gli3-202,196166,Gli3-202;Gli3-203;Gli3-201,Gli3;Gli3;Gli3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,19,21,14634,ENSMUSG00000021318,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19071,cg08445658,-0.000038,0.00000638,-5.956530115,6.99E-09,loss,yes,0.0000191,0.0000108,1.760846234,0.079250374,pos,ns,0.00329793,0.003175749,1.038473015,0.299859197,pos,ns,0.523082627,-0.000274091,0.000109214,-2.509671483,0.012593842,neg,ns,0.090608122,Neurod2,Neurod2_Intergenic_downstream,11,98319333,98319382,98319381,98319382,50,+,GTAACAGGCATTTGTTACCCAGCTCGTGCCAGGAGCGATTGGCAGGTTCG,Distal Intergenic,11,98325415,98329648,4234,2,Neurod2-201,10266,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,22,18013,ENSMUSG00000038255,conserved gene and region,11,98319210,98319400,191,*,191,12,0.654450262,0.587090164,0.062827225,0.000000358,CpGisland,TRUE,U13,Hc-P
21986,cg06921573,0.0000331,0.00000406,8.159690371,8.49E-15,gain,yes,-0.0000121,0.0000069,-1.760839785,0.079251468,neg,ns,0.000145337,0.002020854,0.071918407,0.942713218,pos,ns,0.025620404,-0.0000146,0.0000695,-0.21015167,0.833687353,neg,ns,0.072382259,Dmrta2,Dmrta2_Promoter,4,109977972,109978021,109978020,109978021,50,-,ATTGTTGTCCAATTCTGTCTAATGGAGCCCTAAGGACCAACAATAGAGCG,Promoter (<=1kb),4,109978053,109983687,5635,1,Dmrta2-201,-81,Dmrta2-201,Dmrta2,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,7,13,242620,ENSMUSG00000047143,conserved gene and region,4,109978020,109978412,393,*,393,43,0.745547074,0.816140249,0.109414758,9.23E-35,CpGisland,TRUE,U3,Pr-B
15405,cg01369215,-0.0000185,0.00000485,-3.826019381,0.0001575,loss,ns,-0.0000145,0.00000824,-1.760476951,0.079313034,neg,ns,-0.00501187,0.002413058,-2.07697827,0.038626858,neg,ns,1.413110618,-0.0000193,0.000083,-0.232378431,0.816397437,neg,ns,0.892274702,Iqgap1,Iqgap1_Exon,7,80730241,80730290,80730241,80730242,50,-,CGGGATTTTGTCCACAGAGCTGACAATGGCTGAGAGAAACTTGTCTGTCA,Promoter (<=1kb),7,80726779,80730248,3470,2,Iqgap1-205,0,Iqgap1-201;Iqgap1-205,Iqgap1;Iqgap1,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,29875,ENSMUSG00000030536,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12046,cg16343397,-0.00000397,0.00000305,-1.303772059,0.193278645,loss,ns,0.00000911,0.00000517,1.760425837,0.07932171,pos,ns,0.000989915,0.001516049,0.652957499,0.514267623,pos,ns,0.288810817,-0.000037,0.0000521,-0.709923596,0.478285179,neg,ns,0.931062669,Fbxo38,Fbxo38_Exon,18,62533595,62533644,62533595,62533596,50,-,CGAAATTTCCCCAAAATATGAACATGGGGCATATATGTCCAAATGGATTC,"Exon (Fbxo38-201/Fbxo38, exon 5 of 22)",18,62504155,62548695,44541,2,Fbxo38-201,15051,Fbxo38-201;Fbxo38-203;Fbxo38-202,Fbxo38;Fbxo38;Fbxo38,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,6,107035,ENSMUSG00000042211,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7612,cg24605458,0.000132955,0.0000174,7.662616349,2.35E-13,gain,yes,-0.0000519,0.0000295,-1.760121029,0.079373465,neg,ns,0.037610816,0.008635863,4.355189272,0.0000181,pos,ns,4.742563328,-0.001130737,0.000296987,-3.807365506,0.000169285,neg,ns,0.378579078,Pdss2,Pdss2_threeUTR,10,43440225,43440274,43440225,43440226,50,+,CGCTCCTGTGACCTCAGCAAATGGACAGGAAATAAGTCCTTATTGATTGG,3' UTR,10,43221486,43440602,219117,1,Pdss2-201,218739,Pdss2-201;Pdss2-202;Pdss2-205,Pdss2;Pdss2;Pdss2,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,6,71365,ENSMUSG00000038240,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
27467,cg08291587,-0.00000603,0.00000407,-1.48166687,0.139444695,loss,ns,0.0000122,0.00000691,1.759888236,0.079413011,pos,ns,-0.001547503,0.002025624,-0.763963961,0.445469788,neg,ns,0.351181744,0.0000021,0.0000697,0.030098446,0.976007908,pos,ns,0.885899447,Pbx1,Pbx1_Intron,1,168310246,168310295,168310294,168310295,50,-,CAGCAATGAGGGGACATTAATTTCAATTCTGGTGTTTAAACACTTTGGCG,"Intron (Pbx1-208/Pbx1, intron 2 of 7)",1,168119364,168432270,312907,2,Pbx1-208,121975,Pbx1-208;Pbx1-205;Pbx1-206;Pbx1-201;Pbx1-202;Pbx1-204,Pbx1;Pbx1;Pbx1;Pbx1;Pbx1;Pbx1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,84,18514,ENSMUSG00000052534,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17013,cg07022280,-0.00000783,0.00000397,-1.97311257,0.049370793,loss,ns,0.0000119,0.00000675,1.759791264,0.079429489,pos,ns,0.003596854,0.001976219,1.820068916,0.06971275,pos,ns,1.156687783,-0.000122621,0.000068,-1.804263962,0.072160436,neg,ns,0.92831053,Gm9541,Gm9541_Intergenic_downstream,9,87865195,87865244,87865195,87865196,50,+,CGGAAGTGCTTGAAGCCCGACCACCTGCAATAACAGATTACTGCTCTCTA,Distal Intergenic,9,87769770,87770271,502,1,Gm9541-201,95425,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,3,671731,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14934,cg05996909,0.0000252,0.0000298,0.845834556,0.398297446,gain,ns,0.0000891,0.0000506,1.759607538,0.079460716,pos,ns,0.043215508,0.014831068,2.913850059,0.003829671,pos,ns,2.416838521,-0.001007968,0.000510039,-1.976256181,0.049011998,neg,ns,0.314357655,Nr2f1,Nr2f1_Intergenic_downstream,13,78183236,78183285,78183236,78183237,50,-,CGTGACTGGCATTCCAGTGAGAGACATGCATATTTTAAAACAACAAAGCA,Distal Intergenic,13,78189872,78190443,572,2,Nr2f1-204,7207,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,55,13865,ENSMUSG00000069171,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
8179,cg26135823,-0.00000662,0.00000473,-1.399063505,0.162793676,loss,ns,0.0000142,0.00000804,1.759588694,0.079463919,pos,ns,-0.000623886,0.00235627,-0.264776865,0.791357321,neg,ns,0.101627375,0.000134702,0.000081,1.662334821,0.097456417,pos,ns,0.106136718,Pax2,Pax2_Intron,19,44834434,44834483,44834434,44834435,50,-,CGTTAAACAGAATCTAGTGCTGATGAGGAAATTACACTTGTTTCATTAGC,"Intron (Pax2-203/Pax2, intron 8 of 9)",19,44756045,44837851,81807,1,Pax2-203,78389,Pax2-203;Pax2-201,Pax2;Pax2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,35,166,18504,ENSMUSG00000004231,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
16202,cg17516812,0.0000154,0.0000031,4.978542127,0.00000107,gain,yes,-0.00000928,0.00000527,-1.759575296,0.079466197,neg,ns,-0.003367193,0.001544349,-2.180332037,0.029984641,neg,ns,1.523101143,0.000126368,0.0000531,2.379356074,0.017947835,pos,ns,0.9268843,Bnc2,Bnc2_Intron,4,84586591,84586640,84586639,84586640,50,+,CTGATTGCTGTTCTTTTTACTATCAAGGGACACTCTTGCCCAGACAGACG,"Intron (Bnc2-201/Bnc2, intron 1 of 7)",4,84275095,84675034,399940,2,Bnc2-201,88394,Bnc2-201;Bnc2-202;Bnc2-214;Bnc2-215;Bnc2-206;Bnc2-211;Bnc2-217;Bnc2-207;Bnc2-203;Bnc2-209;Bnc2-204;Bnc2-210,Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,91,242509,ENSMUSG00000028487,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23002,cg25251375,-0.00000304,0.00000137,-2.215184557,0.027474,loss,ns,0.0000041,0.00000233,1.759551927,0.07947017,pos,ns,0.000712233,0.000683009,1.042786686,0.297859618,pos,ns,0.525988371,-0.0000174,0.0000235,-0.73975725,0.460007133,neg,ns,0.051963884,Cdyl2,Cdyl2_fiveUTR,8,116732800,116732849,116732800,116732801,50,-,CGTAAAGGTCCCCAGAAGCCATGCCAGGCTGCGGAACTTGGCTCGCCGGT,Promoter (<=1kb),8,116574400,116732991,158592,2,Cdyl2-201,142,Cdyl2-201,Cdyl2,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,1,75796,ENSMUSG00000031758,conserved gene but different region,8,116732435,116733042,608,*,608,84,0.723684211,1.055293826,0.138157895,3.89E-77,CpGisland,TRUE,U1,Pr-A
25130,cg13141094,0.0000123,0.0000161,0.76080214,0.447353552,gain,ns,-0.0000483,0.0000274,-1.759478338,0.079482682,neg,ns,0.080329384,0.008035879,9.996340237,1.41E-20,pos,yes,19.8502143,-0.00166649,0.000276353,-6.03029109,4.65E-09,neg,yes,0.573078527,Ahdc1,Ahdc1_Intron,4,133043097,133043146,133043145,133043146,50,+,AGTGTGTGTCTGCCATTAGCGACTGCCGCAACTGTGTCAAGGTTACCCCG,"Intron (Ahdc1-210/Ahdc1, intron 2 of 3)",4,133011260,133060820,49561,1,Ahdc1-210,31837,Ahdc1-210;Ahdc1-203;Ahdc1-204;Ahdc1-205;Ahdc1-207;Ahdc1-211;Ahdc1-209;Ahdc1-206;Ahdc1-201;Ahdc1-202,Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,35,49,230793,ENSMUSG00000037692,conserved gene and region,4,133043047,133043197,151,*,151,12,0.635761589,0.795085564,0.079470199,2.68E-08,CpGisland,TRUE,U8,En-Pd
378,cg00685149,0.0000126,0.00000733,1.715912488,0.087177143,gain,ns,-0.0000219,0.0000125,-1.759369758,0.079501145,neg,ns,-0.011844246,0.00364975,-3.24522154,0.001301865,neg,ns,2.885434122,0.000319157,0.000125515,2.542787796,0.011483175,pos,ns,0.774480724,Klhl29,Klhl29_Intron,12,5274650,5274699,5274650,5274651,50,-,CGCTAATCACAAGAAGTGGAAAAAATTAGGAGGTCCTGCCTGCCAAGGAG,"Intron (Klhl29-201/Klhl29, intron 2 of 13)",12,5077472,5375682,298211,2,Klhl29-201,100983,Klhl29-201;Klhl29-202,Klhl29;Klhl29,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,23,208439,ENSMUSG00000020627,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6928,cg04333773,0.0000652,0.00000907,7.188257338,4.93E-12,gain,yes,0.0000271,0.0000154,1.759256557,0.079520399,pos,ns,0.004491754,0.004512881,0.995318553,0.320357621,pos,ns,0.494364941,0.000197251,0.000155198,1.270964308,0.20469423,pos,ns,0.711197107,Gm5195,Gm5195_Intron,13,39649652,39649701,39649652,39649653,50,-,CGAGTCTGGCCTAATGAAAGTCCAGCATGGGGCTAAATGAGTTTCTACCA,"Intron (Gm47352-202/Gm47352-202, intron 1 of 3)",13,39757308,39757967,660,1,Gm5195-201,-107656,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,4,382747,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18544,cg04453140,0.0000274,0.00000995,2.756253999,0.006192992,gain,ns,0.0000297,0.0000169,1.759231993,0.079524577,pos,ns,0.010414458,0.004952712,2.102778952,0.036291082,pos,ns,1.440200083,0.0000833,0.000170323,0.488809488,0.625322207,pos,ns,0.124210079,Hoxb8,Hoxb8_fiveUTR,11,96282959,96283008,96283007,96283008,50,+,TAAAATGAGCTCTTATTTCGTCAACTCACTGTTCTCCAAATACAAAACCG,5' UTR,11,96281905,96285315,3411,1,Hoxb8-201,1054,Hoxb7-201;Hoxb8-201;Hoxb8-202;Hoxb8-203,Hoxb7;Hoxb8;Hoxb8;Hoxb8,0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,11,26,15416,ENSMUSG00000056648,mapped to different genes,11,96282929,96283401,473,*,473,44,0.642706131,0.918325023,0.093023256,3.13E-32,CpGisland,TRUE,NA,NRS
1150,cg14354288,-0.00000322,0.00000194,-1.655294774,0.098876676,loss,ns,-0.00000581,0.0000033,-1.758937685,0.079574653,neg,ns,0.000168354,0.000967805,0.173954434,0.862014813,pos,ns,0.064485271,-0.0000629,0.0000333,-1.889509751,0.059756533,neg,ns,0.955481458,Arhgef7,Arhgef7_Exon,8,11824497,11824546,11824497,11824498,50,-,CGTCTTAGCATGGCAAGGCACTGACCTGATGCATAATCACGTCTTGGCTG,"Exon (Arhgef7-205/Arhgef7, exon 19 of 19)",8,11728105,11827149,99045,1,Arhgef7-205,96392,Arhgef7-205;Arhgef7-201;Arhgef7-202;Arhgef7-203;Arhgef7-204,Arhgef7;Arhgef7;Arhgef7;Arhgef7;Arhgef7,0;96320;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,54126,ENSMUSG00000031511,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5061,cg16361331,-0.00000177,0.000000638,-2.780971153,0.0057513,loss,ns,0.0000019,0.00000108,1.758632689,0.079626575,pos,ns,0.000646707,0.000317296,2.038179767,0.042380437,pos,ns,1.372834566,-0.0000172,0.0000109,-1.57673935,0.115875407,neg,ns,0.02257823,Fosl2,Fosl2_Promoter,5,32135450,32135499,32135450,32135451,50,-,CGTCCTCTAACGCAAATGACCATCTTTGGCAACGTGCGCCAATGGAACAG,Promoter (<=1kb),5,32135801,32157842,22042,1,Fosl2-201,-351,Fosl2-201;Fosl2-202,Fosl2;Fosl2,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,8,14284,ENSMUSG00000029135,conserved gene but different region,5,32135381,32136201,821,*,821,85,0.676004872,0.906887589,0.103532278,6.44E-66,CpGisland,TRUE,U1,Pr-A
11714,cg17938265,-0.0000835,0.0000113,-7.385462309,1.41E-12,loss,yes,0.0000338,0.0000192,1.758376188,0.079670263,pos,ns,-0.01180583,0.005625471,-2.098638418,0.036657578,neg,ns,1.435836238,0.000398345,0.000193459,2.059060063,0.040323543,pos,ns,0.759080201,Rai1,Rai1_fiveUTR,11,60185106,60185155,60185106,60185107,50,-,CGAGTCATGCAGTCTTTTCGAGAAAGGTGTGGTTTCCATGGCAAACAACA,5' UTR,11,60105013,60199195,94183,1,Rai1-201,80093,Rai1-201;Rai1-205;Rai1-204;Rai1-207;Rai1-202;Rai1-203,Rai1;Rai1;Rai1;Rai1;Rai1;Rai1,0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,6,19377,ENSMUSG00000062115,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
24654,cg08413458,0.0000571,0.0000141,4.049622732,0.0000649,gain,ns,-0.0000421,0.000024,-1.758067138,0.079722926,neg,ns,0.017673344,0.007020434,2.51741458,0.012325921,pos,ns,1.909180631,-0.001188084,0.000241432,-4.920983214,0.0000014,neg,yes,0.393757278,R3hdm2,R3hdm2_threeUTR,10,127498644,127498693,127498692,127498693,50,+,TTCAAACTTCGAATGGCCAAAAAGAACTATGACCTGAGGATCCTGGAGCG,3' UTR,10,127380662,127499360,118699,1,R3hdm2-212,117982,R3hdm2-212;R3hdm2-202;R3hdm2-204;R3hdm2-201;R3hdm2-218;R3hdm2-208;R3hdm2-210;R3hdm2-205;R3hdm2-203;R3hdm2-216;R3hdm2-213;R3hdm2-219;Stac3-202;Stac3-203;Stac3-201,R3hdm2;R3hdm2;R3hdm2;R3hdm2;R3hdm2;R3hdm2;R3hdm2;R3hdm2;R3hdm2;R3hdm2;R3hdm2;R3hdm2;Stac3;Stac3;Stac3,0;0;0;0;0;0;0;0;0;0;13162;0;0;-3001;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,8,71750,ENSMUSG00000025404,conserved gene but different region,10,127498508,127498693,186,*,186,13,0.61827957,0.740808824,0.069892473,2.81E-08,CpGisland,TRUE,U10,Tr-S
974,cg19630242,-0.00000227,0.00000154,-1.468458868,0.142993572,loss,ns,0.00000461,0.00000262,1.758066762,0.07972299,pos,ns,0.002037473,0.000767889,2.65334297,0.008380622,pos,ns,2.076723723,-0.0000524,0.0000264,-1.984298639,0.048104071,neg,ns,0.970680635,Qk,Qk_threeUTR,17,10213368,10213417,10213368,10213369,50,-,CGGTCACAATCCTTTGGTAAGGATGGACACGCATATCGTGCCTTCGAACT,3' UTR,17,10202601,10319380,116780,2,Qk-204,105963,Qk-204;Qk-202;Qk-203;Qk-201;Qk-206;Qk-205,Qk;Qk;Qk;Qk;Qk;Qk,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,12,17,19317,ENSMUSG00000062078,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26699,cg21809124,-0.00000361,0.00000279,-1.293061341,0.196952639,loss,ns,-0.00000833,0.00000474,-1.7578704,0.079756466,neg,ns,-0.000751253,0.001387702,-0.541364679,0.588645083,neg,ns,0.230146479,-0.0000277,0.0000477,-0.580721746,0.561849923,neg,ns,0.933583319,Ivns1abp,Ivns1abp_threeUTR,1,151355232,151355281,151355280,151355281,50,-,GACACGTAAAGAAGCAGCAGTCCTGCCCCAGTTCTCCTAAGAAAAATCCG,3' UTR,1,151344477,151364422,19946,1,Ivns1abp-201,10755,Ivns1abp-201;Ivns1abp-203;Ivns1abp-202;Ivns1abp-204,Ivns1abp;Ivns1abp;Ivns1abp;Ivns1abp,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,3,117198,ENSMUSG00000023150,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21613,cg15063099,0.0000162,0.00000283,5.719185267,2.52E-08,gain,yes,0.00000846,0.00000481,1.757795073,0.079769311,pos,ns,0.005305632,0.001409547,3.764068689,0.000199931,pos,ns,3.699120944,-0.0000545,0.0000485,-1.124326928,0.261744195,neg,ns,0.043238735,Ndufaf3,Ndufaf3_Exon,9,108568328,108568377,108568328,108568329,50,-,CGGAATCCCAAAAGCAGCTGTTGTCTCCAGAGCATTCCAGCTGCGCTTGG,Promoter (<=1kb),9,108565537,108567434,1898,2,Ndufaf3-201,-943,Dalrd3-201;Dalrd3-209;Dalrd3-206;Dalrd3-205;Dalrd3-208;Dalrd3-203;Dalrd3-207;Dalrd3-202;Dalrd3-204;Impdh2-201;Impdh2-202;Impdh2-207;Impdh2-208;Impdh2-203;Impdh2-206;Ndufaf3-201;Ndufaf3-203;Ndufaf3-202;Ndufaf3-204;Wdr6-201,Dalrd3;Dalrd3;Dalrd3;Dalrd3;Dalrd3;Dalrd3;Dalrd3;Dalrd3;Dalrd3;Impdh2;Impdh2;Impdh2;Impdh2;Impdh2;Impdh2;Ndufaf3;Ndufaf3;Ndufaf3;Ndufaf3;Wdr6,-1509;-1533;-1537;-2319;-2630;-2860;-3135;-3890;-4015;8042;7889;5193;5059;3128;3124;-894;-1611;-1418;-1398;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,66706,ENSMUSG00000070283,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
24053,cg04644460,-0.000167763,0.0000132,-12.66776388,6.38E-30,loss,yes,0.0000395,0.0000225,1.757776948,0.079772402,pos,ns,0.002814745,0.00659132,0.427038212,0.669647932,pos,ns,0.174153468,-0.000505154,0.000226675,-2.228539464,0.026561414,neg,ns,0.465087533,Duoxa1,Duoxa1_Exon,2,122306326,122306375,122306326,122306327,50,+,CGATGAATAAGCTGGTCACCACCCGAAGCAGCCAGAACAGCCTCTGAGTC,Promoter (<=1kb),2,122302191,122306848,4658,2,Duoxa1-203,473,Duoxa1-203;Duoxa1-202;Duoxa1-207;Duoxa1-201;Duoxa1-205;Duoxa1-204;Duoxa1-206;Duoxa2-201,Duoxa1;Duoxa1;Duoxa1;Duoxa1;Duoxa1;Duoxa1;Duoxa1;Duoxa2,0;0;-615;0;0;0;0;7426,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,213696,ENSMUSG00000027224,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
789,cg01362022,0.000000106,0.00000172,0.061566638,0.95094762,gain,ns,0.00000513,0.00000292,1.757751611,0.079776723,pos,ns,0.001079616,0.000854771,1.263046574,0.207521597,pos,ns,0.682936698,-0.000041,0.0000294,-1.395075866,0.163991637,neg,ns,0.010380079,Stx5a,Stx5a_Exon,19,8742282,8742331,8742282,8742283,50,-,CGGAAACGCTACGGGTCTAAGAACACGGATCAGGGTGTCTACCTGGGTCT,Promoter (<=1kb),19,8741413,8755586,14174,1,Stx5a-218,869,1700092M07Rik-201;1700092M07Rik-202;Stx5a-218;Stx5a-213;Stx5a-203;Stx5a-219;Stx5a-205;Stx5a-201;Stx5a-209;Stx5a-212;Stx5a-202;Stx5a-206;Stx5a-208;Stx5a-211;Stx5a-207;Wdr74-202;Wdr74-201;Wdr74-203;Wdr74-204;Wdr74-207;Wdr74-205;Wdr74-206;Wdr74-208,1700092M07Rik;1700092M07Rik;Stx5a;Stx5a;Stx5a;Stx5a;Stx5a;Stx5a;Stx5a;Stx5a;Stx5a;Stx5a;Stx5a;Stx5a;Stx5a;Wdr74;Wdr74;Wdr74;Wdr74;Wdr74;Wdr74;Wdr74;Wdr74,1564;1520;0;0;0;0;0;0;0;0;0;0;0;0;-529;0;0;0;6401;0;0;0;2614,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,56389,ENSMUSG00000010110,conserved gene and region,19,8742266,8742308,43,*,43,7,0.558139535,2.104895105,0.162790698,0.000000419,CpGisland,TRUE,U1,Pr-A
14759,cg13504955,-0.00000832,0.00000615,-1.353229353,0.176968339,loss,ns,0.0000184,0.0000104,1.757694941,0.079786388,pos,ns,0.004343752,0.003060776,1.419166799,0.156855076,pos,ns,0.804501423,-0.000100112,0.00010526,-0.951094497,0.342297336,neg,ns,0.187692712,Rnf165,Rnf165_Exon,18,77563326,77563375,77563326,77563327,50,-,CGCTTAAATAGCAATGCCTTCCTCAGATGGAGACAGGAAATGGTTAAGAG,"Exon (Rnf165-205/Rnf165, exon 1 of 1)",18,77456110,77565136,109027,2,Rnf165-201,1761,Rnf165-201;Rnf165-202;Rnf165-204;Rnf165-205;Rnf165-203,Rnf165;Rnf165;Rnf165;Rnf165;Rnf165,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,21,225743,ENSMUSG00000025427,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
20143,cg01740040,0.00000672,0.0000122,0.550720112,0.582222202,gain,ns,0.0000364,0.0000207,1.757560354,0.079809347,pos,ns,-0.002710189,0.006074124,-0.446186001,0.655774386,neg,ns,0.183245551,0.000345994,0.000208889,1.656355151,0.098661699,pos,ns,0.832166225,Calcoco1,Calcoco1_Intergenic_upstream,15,102737386,102737435,102737386,102737387,50,+,CGGAATTGGTGTAATTCAGAGAAATTAATGACGACTTTCCGCGGGACGGC,Distal Intergenic,15,102706777,102722178,15402,2,Calcoco1-201,-15208,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,20,29,67488,ENSMUSG00000023055,conserved gene but different region,15,102737359,102737627,269,*,269,21,0.565055762,0.991922739,0.078066915,4.85E-14,CpGisland,TRUE,U11,Tr-P
23669,cg06837246,-0.00000509,0.00000166,-3.05839833,0.002419302,loss,ns,-0.00000496,0.00000282,-1.757536603,0.079813399,neg,ns,-0.001410116,0.000827537,-1.703991478,0.089384742,neg,ns,1.048736608,0.0000467,0.0000285,1.639607167,0.102101218,pos,ns,0.946894184,Ptbp2,Ptbp2_threeUTR,3,119719527,119719576,119719575,119719576,50,-,AATATATATTTAAATGCACGTAAGTCATGTCAACTTCAAAAACATCTACG,3' UTR,3,119718742,119783388,64647,2,Ptbp2-201,63812,Ptbp2-201;Ptbp2-213;Ptbp2-208;Ptbp2-206;Ptbp2-204;Ptbp2-211;Ptbp2-202,Ptbp2;Ptbp2;Ptbp2;Ptbp2;Ptbp2;Ptbp2;Ptbp2,0;0;0;0;0;4811;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,13,56195,ENSMUSG00000028134,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20320,cg17026220,-0.0000203,0.00000792,-2.568328821,0.010687137,loss,ns,0.0000236,0.0000134,1.757423411,0.079832712,pos,ns,-0.00026338,0.003940335,-0.066841952,0.946750613,neg,ns,0.023764405,-0.000016,0.000135508,-0.118261016,0.905937436,neg,ns,0.138317111,Hoxc5,Hoxc5_Intron,15,102998095,102998144,102998143,102998144,50,+,CCCGGTTGTTTGCAGAAAATTTACAGCTGAGTAATAAAAGTTTACGATCG,"Intron (Hoxc5-202/Hoxc5, intron 1 of 1)",15,102967443,103015676,48234,1,Hoxc5-202,30652,Hoxc5-202;Hoxc6-202;Hoxc6-203;Hoxc8-201;Hoxc8-202,Hoxc5;Hoxc6;Hoxc6;Hoxc8;Hoxc8,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,46,134,15424,ENSMUSG00000022485,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
6262,cg09190809,0.000382357,0.0000314,12.18173102,3.69E-28,gain,yes,-0.0000937,0.0000533,-1.757345375,0.079846029,neg,ns,0.056424219,0.01562199,3.611845776,0.000354512,pos,ns,3.450369288,0.001343188,0.000537239,2.500168503,0.012929731,pos,ns,0.451876245,Eif4ebp3,Eif4ebp3_Exon,18,36665298,36665347,36665298,36665299,50,-,CGACCGAAAGTTCCTGCTGGAGTGCAAGAACTCACCCATTGCCCGGACAC,"Exon (Maskbp3-201/Maskbp3, exon 7 of 8)",18,36664060,36665917,1858,1,Eif4ebp3-201,1238,Eif4ebp3-201;Maskbp3-201;Sra1-204;Sra1-203;Sra1-206;Sra1-202;Sra1-201;Sra1-205,Eif4ebp3;Maskbp3;Sra1;Sra1;Sra1;Sra1;Sra1;Sra1,0;0;5468;4939;4943;5261;4938;4929,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,108112,ENSMUSG00000090264,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
12258,cg06599337,-0.00000153,0.0000176,-0.086781819,0.930900966,loss,ns,0.0000525,0.0000299,1.757272781,0.079858419,pos,ns,0.014064861,0.008751982,1.607048697,0.109061717,pos,ns,0.962327668,-0.000756355,0.00030098,-2.512974206,0.012478936,neg,ns,0.253388559,AL772407.1,AL772407.1_Intergenic_upstream,2,63574300,63574349,63574348,63574349,50,+,TTAGAAGTGTTTTTCAACATTGGCTTTTGATCAGGTGACTAGTAGCATCG,Distal Intergenic,2,63410771,63411266,496,2,AL772407.1-201,-163034,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,7,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27132,cg18538750,0.0000223,0.00000571,3.912936572,0.000112109,gain,ns,0.000017,0.0000097,1.757065213,0.079893855,pos,ns,0.004356099,0.002841743,1.532897192,0.126321062,pos,ns,0.898524231,-0.0000262,0.0000977,-0.268483632,0.78850565,neg,ns,0.867252973,Dhx35,Dhx35_Intergenic_downstream,2,159004810,159004859,159004858,159004859,50,-,TTGCTCAAATGTGTAATGAGGCCCACGGGGAATATTTGTGGGGACCTCCG,Distal Intergenic,2,158850629,158857368,6740,1,Dhx35-204,154230,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,14,14,71715,ENSMUSG00000027655,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3509,cg10648608,-0.0000033,0.00000866,-0.381523574,0.70307615,loss,ns,0.0000258,0.0000147,1.75702078,0.079901443,pos,ns,0.001284686,0.004309029,0.29813824,0.76579738,pos,ns,0.115886124,-0.0000846,0.000148187,-0.57097461,0.568430527,neg,ns,0.74445633,Gm11892,Gm11892_Intergenic_upstream,4,24219140,24219189,24219188,24219189,50,-,TAATTATACAAATCCAAGGTGGCCAATCAGCTTTCCAGGCTGAACCTTCG,Distal Intergenic,4,24238100,24239301,1202,1,Gm11892-201,-18960,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,16,16,664973,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18381,cg00653985,0.00000201,0.00000211,0.951265395,0.342210736,gain,ns,0.00000631,0.00000359,1.756895132,0.079922901,pos,ns,0.000343091,0.001051793,0.326195861,0.74449627,pos,ns,0.128137474,0.0000293,0.0000362,0.809789459,0.418682337,pos,ns,0.056249888,Ppp1r9b,Ppp1r9b_threeUTR,11,95006851,95006900,95006851,95006852,50,-,CGGACCATGCCCTCTGTCAGGTCGTCCCCATAAAAGCAGCCCCCAGAGCC,3' UTR,11,94991035,95006899,15865,1,Ppp1r9b-201,15816,Ppp1r9b-201;Ppp1r9b-202;Samd14-201;Samd14-203;Samd14-202,Ppp1r9b;Ppp1r9b;Samd14;Samd14;Samd14,0;0;-2979;-2982;-3381,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,2,217124,ENSMUSG00000038976,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5140,cg09715604,-0.00000506,0.00000172,-2.93876182,0.003542667,loss,ns,0.00000514,0.00000293,1.756542845,0.07998309,pos,ns,0.001311537,0.00085725,1.529935452,0.127052463,pos,ns,0.896016911,-0.0000562,0.0000295,-1.907789917,0.057342165,neg,ns,0.96009957,Plxna4,Plxna4_Intron,6,32505020,32505069,32505020,32505021,50,+,CGCCACATACAAATGACAGAGCAGTTACGGTTACTTTACCAATTACAGGG,"Intron (Plxna4-201/Plxna4, intron 2 of 31)",6,32144268,32588192,443925,2,Plxna4-201,83123,Plxna4-201,Plxna4,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,9,243743,ENSMUSG00000029765,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4803,cg00794359,0.0000366,0.0000109,3.347661548,0.00091539,gain,ns,0.0000326,0.0000186,1.756336774,0.080018315,pos,ns,0.014442887,0.005440641,2.654629812,0.008349445,pos,ns,2.078342412,-0.000399479,0.000187103,-2.135070703,0.033539011,neg,ns,0.145874986,Kcnk3,Kcnk3_Exon,5,30622606,30622655,30622606,30622607,50,+,CGAGAAGCTGCAGTACTCCATCCCCATGATCATCCCGCGGGACCTCTCCA,"Exon (Kcnk3-201/Kcnk3, exon 2 of 2)",5,30588170,30625271,37102,1,Kcnk3-201,34436,Kcnk3-201;Kcnk3-202,Kcnk3;Kcnk3,0;1233,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,16527,ENSMUSG00000049265,conserved gene and region,5,30622207,30622831,625,*,625,69,0.68,0.956208426,0.1104,9.54E-56,CpGisland,TRUE,U3,Pr-B
9781,cg27564378,-0.000000127,0.0000033,-0.038542891,0.969279644,loss,ns,-0.00000985,0.00000561,-1.756180019,0.080045119,neg,ns,-0.001551915,0.001642815,-0.944668006,0.34556408,neg,ns,0.461471406,-0.0000377,0.0000565,-0.666754088,0.505425162,neg,ns,0.940965108,Trps1,Trps1_Exon,15,50846162,50846211,50846210,50846211,50,+,AGCTCAGCATCTTGCCTGGTGCGGTTATGCAGTCCTAAGTGATACTTTCG,"Exon (Trps1-202/Trps1, exon 2 of 6)",15,50654752,50889691,234940,2,Trps1-202,43480,Trps1-202;Trps1-206;Trps1-204;Trps1-205;Trps1-207;Trps1-201;Trps1-208,Trps1;Trps1;Trps1;Trps1;Trps1;Trps1;Trps1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,36,83925,ENSMUSG00000038679,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
368,cg15318407,-0.00000791,0.00000578,-1.367717199,0.172391305,loss,ns,0.0000173,0.00000983,1.756140255,0.080051919,pos,ns,0.009400308,0.002878591,3.265593258,0.00121465,pos,ns,2.915548923,-0.000344445,0.000099,-3.479439036,0.00057445,neg,ns,0.895298992,Zfhx4,Zfhx4_Exon,3,5242669,5242718,5242669,5242670,50,+,CGCCATAATACAGGGGATTGGCAAAGACAAAGAACCTCTTATAAGCTTTC,"Exon (Zfhx4-203/Zfhx4, exon 2 of 11)",3,5218526,5413165,194640,1,Zfhx4-203,24143,Zfhx4-203;Zfhx4-202;Zfhx4-201;Zfhx4-204;Zfhx4-205,Zfhx4;Zfhx4;Zfhx4;Zfhx4;Zfhx4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,23,77,80892,ENSMUSG00000025255,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24104,cg26934556,-0.00000976,0.000007,-1.395137973,0.163972928,loss,ns,0.0000209,0.0000119,1.755710939,0.080125371,pos,ns,0.007847776,0.003482793,2.253299448,0.024938933,pos,ns,1.603122137,-0.000276145,0.000119773,-2.305571728,0.021794471,neg,ns,0.889443115,Fnbp1l,Fnbp1l_Exon,3,122552145,122552194,122552145,122552146,50,-,CGACCACTGAATAGTTCAATGGAAAACAGAAAGAAATGGTAAATTATTCA,"Exon (Fnbp1l-204/Fnbp1l, exon 6 of 12)",3,122538719,122563881,25163,2,Fnbp1l-204,11687,Fnbp1l-204;Fnbp1l-201;Fnbp1l-203;Fnbp1l-206;Fnbp1l-205,Fnbp1l;Fnbp1l;Fnbp1l;Fnbp1l;Fnbp1l,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,214459,ENSMUSG00000039735,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5394,cg15221079,0.0000036,0.00000585,0.61561406,0.538600966,gain,ns,-0.0000175,0.00000994,-1.755613453,0.080142057,neg,ns,-0.008389667,0.002912575,-2.88049833,0.004247152,neg,ns,2.371902155,0.0000891,0.000100163,0.889787578,0.374269933,pos,ns,0.812370537,Kcnip1,Kcnip1_Intron,11,33772822,33772871,33772822,33772823,50,-,CGAGAGGACAGATTGAGTCACTCGGCATCTGCTGGGAGCAATATGCTTGG,"Intron (Kcnip1-202/Kcnip1, intron 1 of 7)",11,33629339,33843461,214123,2,Kcnip1-202,70590,Kcnip1-202;Kcnip1-201;Kcnip1-203;Kcnip1-207;Kcnip1-205;Kcnip1-204,Kcnip1;Kcnip1;Kcnip1;Kcnip1;Kcnip1;Kcnip1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,4,70357,ENSMUSG00000053519,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5393,cg00092936,-0.00000403,0.0000028,-1.440465587,0.150744908,loss,ns,-0.00000835,0.00000476,-1.755437155,0.080172241,neg,ns,-0.004774431,0.001393202,-3.426949285,0.000692797,neg,ns,3.159393984,0.000130412,0.0000479,2.721904331,0.0068578,pos,ns,0.950694389,Mvb12b,Mvb12b_Intron,2,33771785,33771834,33771833,33771834,50,-,GGTGAACACAGAACAGCAGAGCGTTTTTATCGTCATTTAATTTTAAAACG,"Intron (Mvb12b-201/Mvb12b, intron 7 of 9)",2,33729953,33887946,157994,2,Mvb12b-201,116112,Mvb12b-201,Mvb12b,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,28,47,72543,ENSMUSG00000038740,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27876,cg26298663,-0.00000294,0.00000317,-0.928832737,0.353698436,loss,ns,0.00000944,0.00000538,1.755364046,0.080184761,pos,ns,-0.002233932,0.001575728,-1.417714564,0.157278464,neg,ns,0.80333074,0.0000662,0.0000542,1.222162478,0.222574649,pos,ns,0.94703101,Smyd2,Smyd2_Intergenic_upstream,1,189945295,189945344,189945343,189945344,50,+,TTCACGTGGAAGTGTGTGCGGCTGACCCAAACCTCGCTGACATGTCAGCG,Distal Intergenic,1,189880492,189922363,41872,2,Smyd2-201,-22932,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,7,226830,ENSMUSG00000026603,conserved gene and region,1,189945264,189945438,175,*,175,14,0.542857143,1.088888889,0.08,1.18E-09,CpGisland,TRUE,U15,NS
19569,cg22438236,0.0000154,0.00000273,5.620052911,4.26E-08,gain,yes,-0.00000815,0.00000465,-1.75499028,0.080248792,neg,ns,0.000951195,0.001360888,0.698951495,0.485106397,pos,ns,0.314162999,-0.00000841,0.0000468,-0.179775742,0.857446082,neg,ns,0.051161307,Sox14,Sox14_Intergenic_downstream,9,99869305,99869354,99869353,99869354,50,+,TGAACTTCTCCCGACATATGTTTCCCGCAGATAAGTAAACAATCTGGACG,Distal Intergenic,9,99874220,99875655,1436,2,Sox14-202,6301,Sox14-201;Sox14-202,Sox14;Sox14,0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,12,18,20669,ENSMUSG00000053747,mapped to different genes,9,99869255,99869839,585,*,585,42,0.608547009,0.785385501,0.071794872,5.36E-26,CpGisland,TRUE,U3,Pr-B
8046,cg01099217,0.0000216,0.00000353,6.118304391,2.85E-09,gain,yes,0.0000105,0.00000599,1.754853478,0.080272238,pos,ns,0.004841257,0.001754784,2.758891148,0.006144446,pos,ns,2.21151727,0.0000219,0.0000603,0.363331154,0.716605158,pos,ns,0.092583475,Pax5,Pax5_Intron,4,44702416,44702465,44702464,44702465,50,-,ACAGAAAGGAAACGCGATTCGTTCCACTTGGAATTTCCTTGAAATCTCCG,"Intron (Pax5-201/Pax5, intron 1 of 9)",4,44524757,44710487,185731,2,Pax5-201,8022,Pax5-201;Pax5-202;Pax5-203;Pax5-204;Pax5-205;Pax5-207;Pax5-206;Pax5-209;Pax5-210;Pax5-212;Pax5-213;Pax5-214;Pax5-215;Pax5-208;Pax5-216;Pax5-217;Pax5-218;Pax5-219,Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,19,45,18507,ENSMUSG00000014030,conserved gene and region,4,44702184,44702501,318,*,318,18,0.537735849,0.785185185,0.056603774,9.25E-10,CpGisland,TRUE,U3,Pr-B
6569,cg13509579,-0.0000153,0.00000622,-2.452868446,0.014722842,loss,ns,0.0000185,0.0000106,1.754829996,0.080276263,pos,ns,-0.003261776,0.003096581,-1.053347727,0.293001971,neg,ns,0.533129459,-0.000185846,0.000106491,-1.745177204,0.081944888,neg,ns,0.81801388,Zfp536,Zfp536_Intron,7,37752735,37752784,37752783,37752784,50,+,TCGTTGAAGCCAGTGGGGTTACTCCACCTCACTCATCAGTCAGATGAGCG,"Intron (Zfp536-202/Zfp536, intron 1 of 6)",7,37479104,37769624,290521,2,Zfp536-202,16840,Zfp536-202;Zfp536-201;Zfp536-203;Zfp536-206;Zfp536-209;Zfp536-208;Zfp536-205;Zfp536-207,Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,73,112,243937,ENSMUSG00000043456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8099,cg20205468,0.00000209,0.00000247,0.846544209,0.397902235,gain,ns,-0.00000735,0.00000419,-1.754813109,0.080279158,neg,ns,-0.00267239,0.001227832,-2.176510068,0.03027166,neg,ns,1.51896376,0.0000399,0.0000422,0.944281953,0.345760955,pos,ns,0.048993342,Pax2,Pax2_Exon,19,44742644,44742693,44742644,44742645,50,+,CGCCGCTACCCAGCCTGGCGTGACGGATTAAACATCAACTAGTTAAATAA,"Exon (Gm35610-202/Gm35610-202, exon 6 of 6)",19,44756045,44837851,81807,1,Pax2-203,-13352,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,16,166,18504,ENSMUSG00000004231,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
7574,cg05163400,-0.00000219,0.00000196,-1.116578085,0.26503946,loss,ns,-0.00000585,0.00000333,-1.754806921,0.080280219,neg,ns,-0.001742502,0.000976527,-1.784386981,0.075338699,neg,ns,1.122981886,0.0000409,0.0000336,1.218464131,0.223974118,pos,ns,0.95654175,Cpeb2,Cpeb2_threeUTR,5,43286241,43286290,43286241,43286242,50,+,CGTAGGGGCAACACAGTCTGCTGCTATATAGTGGGGGAAGCGTGCACTTA,3' UTR,5,43233170,43289723,56554,1,Cpeb2-204,53071,Cpeb2-204;Cpeb2-201;Cpeb2-205,Cpeb2;Cpeb2;Cpeb2,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,11,231207,ENSMUSG00000039782,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1155,cg09200766,-0.0000651,0.0000142,-4.594465787,0.00000632,loss,ns,0.0000422,0.0000241,1.754769421,0.080286647,pos,ns,0.03425412,0.007053499,4.856329888,0.0000019,pos,ns,5.721220975,-0.001338191,0.000242569,-5.516739256,7.29E-08,neg,yes,0.733687483,Rpl23a-ps13,Rpl23a-ps13_Intergenic_downstream,X,11887699,11887748,11887699,11887700,50,+,CGTCACTGTTAATTCTTGCTAAGCGCTGACAGCAGGATCAACCCCCAAAC,Distal Intergenic,20,11867265,11867705,441,1,Rpl23a-ps13-201,20434,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,14,628338,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23111,cg23211292,0.0000254,0.00000696,3.655796479,0.000301064,gain,ns,-0.0000207,0.0000118,-1.754483374,0.080335698,neg,ns,0.005667216,0.003464616,1.635741378,0.102908599,pos,ns,0.987548332,-0.000242112,0.000119148,-2.032028804,0.04300311,neg,ns,0.489812462,Rnf220,Rnf220_Intron,4,117304385,117304434,117304385,117304386,50,-,CGATCCGACGGGAATTTCACTTGCTGTGCAGATCCCGCTGTCCGGCTGTC,"Intron (Rnf220-201/Rnf220, intron 3 of 14)",4,117271463,117497052,225590,2,Rnf220-201,192618,Rnf220-201;Rnf220-202;Rnf220-208;Rnf220-207,Rnf220;Rnf220;Rnf220;Rnf220,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,4,117304190,117304735,546,*,546,58,0.690476191,0.936645963,0.106227106,6.95E-46,CpGisland,TRUE,NA,NRS
2986,cg10343539,0.00000535,0.0000048,1.113185446,0.266491212,gain,ns,0.0000143,0.00000816,1.754421049,0.080346389,pos,ns,-0.001228082,0.002390371,-0.513762267,0.607784207,neg,ns,0.216250589,0.000016,0.0000822,0.194605607,0.845829185,pos,ns,0.855985115,Lrmda,Lrmda_Intron,14,22257397,22257446,22257397,22257398,50,-,CGAGGGAGCAATAGCAGAATTAATATCTGGGAGCGTTGATAATTATATAT,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,237685,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206,Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6438,cg07867462,0.00000399,0.000000892,4.47320526,0.0000108,gain,ns,-0.00000266,0.00000152,-1.754376822,0.080353976,neg,ns,0.000395023,0.000444125,0.889441792,0.374455376,pos,ns,0.42659993,-0.0000141,0.0000153,-0.921937568,0.357278086,neg,ns,0.01941497,Tenm2,Tenm2_Promoter,11,37236182,37236231,37236182,37236183,50,+,CGATTAGGAGGAGGACGCCCAAGCACGACCTGAGCCTGCGAGCCACCCAG,Promoter (<=1kb),11,36944205,37235964,291760,2,Tenm2-207,-218,Tenm2-202;Tenm2-207,Tenm2;Tenm2,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,6,84,23964,ENSMUSG00000049336,mapped to different genes,11,37236045,37236221,177,*,177,17,0.672316384,0.854829546,0.096045198,5.62E-13,CpGisland,TRUE,NA,NRS
19350,cg10187298,0.00028716,0.000017,16.88845844,7.95E-46,gain,yes,-0.0000507,0.0000289,-1.753946584,0.080427812,neg,ns,0.005135623,0.008462738,0.606851275,0.5443938,pos,ns,0.26408683,0.00000487,0.000291033,0.016748118,0.986648334,pos,ns,0.125186527,Dnajc22,Dnajc22_Promoter,15,99093629,99093678,99093629,99093630,50,-,CGCGGCCTTTATTAGGGATTCCGCGGCTGTCGGTCCCGCCATCCATCCTG,Promoter (<=1kb),15,99093170,99100917,7748,1,Dnajc22-202,459,Dnajc22-202,Dnajc22,0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,6,8,72778,ENSMUSG00000038009,conserved gene and region,15,99093593,99093959,367,*,367,36,0.697547684,0.811348563,0.098092643,2.41E-27,CpGisland,TRUE,U3,Pr-B
14025,cg00808134,-0.000000792,0.00000147,-0.538555428,0.590580146,loss,ns,0.00000438,0.0000025,1.753766649,0.080458708,pos,ns,0.001717271,0.000732133,2.345571404,0.019628024,pos,ns,1.70712342,-0.0000583,0.0000252,-2.316182401,0.021200306,neg,ns,0.959670418,Lnpk,Lnpk_Intergenic_downstream,2,74272729,74272778,74272777,74272778,50,+,GGAACCTCCTTGAAGTTAATTGCAGCACAGCTCACTAATGAAACTTTCCG,Distal Intergenic,2,74520341,74533106,12766,2,Lnpk-204,260328,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,15,16,69605,ENSMUSG00000009207,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20356,cg14155483,0.000120958,0.00000819,14.77235524,9.34E-38,gain,yes,-0.0000244,0.0000139,-1.753667352,0.080475762,neg,ns,0.011969668,0.004075311,2.937117715,0.003560985,pos,ns,2.448429899,-0.000189937,0.00014015,-1.355243899,0.176326508,neg,ns,0.236286703,Hoxc5,Hoxc5_Intron,15,103010073,103010122,103010121,103010122,50,-,AGAACGGGCGGAGAGAGTTTTTTATGGCCCCATAAAAACAATCACGCTCG,"Intron (Hoxc5-202/Hoxc5, intron 1 of 1)",15,102967443,103015676,48234,1,Hoxc5-202,42630,Hoxc5-202;Hoxc5-201;Hoxc6-202;Hoxc6-203;Hoxc6-201,Hoxc5;Hoxc5;Hoxc6;Hoxc6;Hoxc6,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,Intron,46,134,15424,ENSMUSG00000022485,mapped to different genes,15,103009987,103010218,232,*,232,17,0.556034483,0.969041769,0.073275862,5.22E-11,CpGisland,TRUE,U13,Hc-P
23179,cg20476719,0.0000978,0.0000165,5.936057352,7.81E-09,gain,yes,-0.0000491,0.000028,-1.753590995,0.080488878,neg,ns,0.015639507,0.008202183,1.906749255,0.057477388,pos,ns,1.240502973,-0.00051706,0.000282072,-1.833076775,0.067749996,neg,ns,0.300847717,Rnf220,Rnf220_Intron,4,117391577,117391626,117391577,117391578,50,-,CGATAAGCCTTGGGCTCTTAGCGTCTTAAATACCTCTGACAAGCTATACA,"Intron (Rnf220-201/Rnf220, intron 2 of 14)",4,117271463,117497052,225590,2,Rnf220-201,105426,Rnf220-201;Rnf220-207,Rnf220;Rnf220,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10446,cg05089540,-0.00000563,0.00000234,-2.408172365,0.016616146,loss,ns,0.00000696,0.00000397,1.753538498,0.080497897,pos,ns,-0.000298705,0.001163252,-0.25678446,0.797515507,neg,ns,0.098260864,-0.0000455,0.00004,-1.136312567,0.256703429,neg,ns,0.936744565,Npas3,Npas3_Intron,12,53566980,53567029,53567028,53567029,50,+,CCTTCTGGGAGAATCCTGGGTGAGAGGGACACTGTGCGTTGATCCCTGCG,"Intron (Npas3-204/Npas3, intron 2 of 10)",12,53248157,54069532,821376,1,Npas3-204,318823,Npas3-204;Npas3-201;Npas3-203,Npas3;Npas3;Npas3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,83,103,27386,ENSMUSG00000021010,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20018,cg06500545,0.00000753,0.00000293,2.568724346,0.010675207,gain,ns,-0.00000874,0.00000498,-1.753361815,0.080528256,neg,ns,-0.00244036,0.001459578,-1.671963112,0.095540585,neg,ns,1.019812103,0.0000412,0.0000502,0.821172155,0.412179264,pos,ns,0.860703555,Hdac5,Hdac5_threeUTR,11,102202595,102202644,102202643,102202644,50,+,CTGTTGTTGCATGACCAGCTGCTGCAGGGCCTGGGGACTCTGCGGCAGCG,3' UTR,11,102194432,102230166,35735,2,Hdac5-203,27522,Hdac5-203;Hdac5-201;Hdac5-218;Hdac5-216;Hdac5-205;Hdac5-202;Hdac5-204;Hdac5-212;Hdac5-213;Hdac5-219;Hdac5-207;Hdac5-210;Hdac5-220;Hdac5-209;Hdac5-217,Hdac5;Hdac5;Hdac5;Hdac5;Hdac5;Hdac5;Hdac5;Hdac5;Hdac5;Hdac5;Hdac5;Hdac5;Hdac5;Hdac5;Hdac5,0;0;0;0;0;0;0;-4516;-3700;-3102;-2238;-1779;27498;16284;16285,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,3,15184,ENSMUSG00000008855,conserved gene but different region,11,102202637,102202752,116,*,116,9,0.681034483,0.671814672,0.077586207,0.00000318,CpGisland,TRUE,U10,Tr-S
5885,cg21834739,-0.0000125,0.00000755,-1.659496579,0.09802702,loss,ns,-0.0000225,0.0000128,-1.753260905,0.0805456,neg,ns,0.010782914,0.003757862,2.869427504,0.004394645,pos,ns,2.3570762,-0.000610493,0.000129233,-4.723983154,0.00000351,neg,ns,0.649911702,Prrc2a,Prrc2a_Exon,17,35161428,35161477,35161428,35161429,50,+,CGGAAATTCCTCTCGAGAGAATCGTGACAGTAGGCTTGATGCCCTTCCAC,"Exon (Prrc2a-201/Prrc2a, exon 6 of 31)",17,35149076,35164897,15822,2,Prrc2a-201,3420,Prrc2a-201;Prrc2a-206;Prrc2a-203,Prrc2a;Prrc2a;Prrc2a,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,13,53761,ENSMUSG00000024393,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18553,cg17584085,-0.00000717,0.00000373,-1.924270633,0.055235861,loss,ns,0.0000111,0.00000633,1.752881919,0.080610764,pos,ns,-0.0000935,0.001854405,-0.050427435,0.95981425,neg,ns,0.017812806,-0.0000254,0.0000638,-0.397710984,0.691116964,neg,ns,0.052901059,Hoxb7,Hoxb7_fiveUTR,11,96286630,96286679,96286678,96286679,50,+,TTTTTGGTGTAAATCTGGACTCTAATTCTGTAATATATCAAGGAATCTCG,Promoter (<=1kb),11,96286623,96290162,3540,1,Hoxb7-201,7,Hoxb7-201;Hoxb7-202;Hoxb8-201;Hoxb8-202;Hoxb8-203,Hoxb7;Hoxb7;Hoxb8;Hoxb8;Hoxb8,0;-2036;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,8,15415,ENSMUSG00000038721,conserved gene and region,11,96286678,96287286,609,*,609,56,0.622331691,0.952625698,0.091954023,1.47E-40,CpGisland,TRUE,U3,Pr-B
24076,cg15693507,0.0000341,0.0000104,3.286828722,0.001129533,gain,ns,0.0000309,0.0000176,1.752578455,0.080662973,pos,ns,0.00586181,0.005167206,1.134425582,0.25749251,pos,ns,0.5892354,-0.0000324,0.0001777,-0.182363872,0.855416373,neg,ns,0.25890417,Zic5,Zic5_Intergenic_downstream,14,122453301,122453350,122453301,122453302,50,+,CGATGCCATTTCACTTTTGAACTATTGTTTTTGAGTTATGCCATGTGGTC,Distal Intergenic,14,122459193,122460021,829,2,Zic5-202,6671,Zic5-201,Zic5,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,14,26,65100,ENSMUSG00000041703,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
15052,cg02584590,-0.0000049,0.00000532,-0.921155652,0.357685463,loss,ns,0.0000158,0.00000904,1.752550192,0.080667837,pos,ns,0.0026868,0.00264805,1.014633412,0.311071849,pos,ns,0.507139289,-0.000162235,0.0000911,-1.781505475,0.075808832,neg,ns,0.884726875,Gphn,Gphn_Exon,12,78654799,78654848,78654847,78654848,50,+,TTTTCCAGCCCAGATGACTTACTCAATGCCTTGAATGAGGGTATCAGTCG,"Exon (Gphn-201/Gphn, exon 19 of 24)",12,78226379,78684772,458394,1,Gphn-201,428420,Gphn-201;Gphn-202,Gphn;Gphn,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,11,268566,ENSMUSG00000047454,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18689,cg07543191,-0.0000144,0.0000192,-0.747282723,0.455459353,loss,ns,0.0000572,0.0000327,1.752495387,0.08067727,pos,ns,0.013220206,0.009565515,1.382069378,0.167945431,pos,ns,0.774831806,-0.000347503,0.000328957,-1.056378466,0.291617877,neg,ns,0.541238772,Skap1,Skap1_Intron,11,96742025,96742074,96742025,96742026,50,-,CGATGGTGCATTCTAATTGCAACCATAATGAGCTCTCTAAATGTGCGTGC,"Intron (Skap1-204/Skap1, intron 11 of 12)",11,96464593,96758941,294349,1,Skap1-204,277432,Skap1-204;Skap1-203;Skap1-201,Skap1;Skap1;Skap1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,40,46,78473,ENSMUSG00000057058,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
25369,cg18778737,0.0000572,0.00000922,6.206294254,1.74E-09,gain,yes,-0.0000275,0.0000157,-1.752429217,0.080688659,neg,ns,0.007835528,0.00459109,1.706681453,0.088882686,pos,ns,1.051182832,-0.000124396,0.000157887,-0.787878847,0.431369592,neg,ns,0.661924211,Gm9341,Gm9341_Intergenic_downstream,7,136083912,136083961,136083912,136083913,50,+,CGCCAGTACATGGCTGCTGTCGTTTTTGCTGGAGGGCACATTTTGCATTT,Distal Intergenic,7,135952798,135953783,986,1,Gm9341-201,131114,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,27,28,668764,NA,mapped to different genes,7,136083812,136083933,122,*,122,9,0.598360656,0.824324324,0.073770492,0.0000048,CpGisland,TRUE,NA,NRS
8322,cg20016595,0.0000734,0.0000119,6.187930215,1.93E-09,gain,yes,-0.0000353,0.0000202,-1.752410655,0.080691854,neg,ns,0.006064795,0.00590641,1.026815778,0.305307752,pos,ns,0.515262168,0.000100245,0.000203121,0.493523503,0.621992191,pos,ns,0.582643545,Zeb2,Zeb2_Intron,2,45019991,45020040,45019991,45019992,50,-,CGAAAGAATGTCAAGGACAATTCCAAACACAAAACTTTGATTGTGCTGGA,"Intron (Zeb2-212/Zeb2, intron 4 of 10)",2,44983632,45117395,133764,2,Zeb2-212,97355,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-227;Zeb2-216;Zeb2-229;Zeb2-218;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27290,cg03350186,0.0000489,0.0000058,8.433269779,1.29E-15,gain,yes,-0.0000173,0.00000986,-1.752388682,0.080695637,neg,ns,-0.000284767,0.002887579,-0.098617931,0.921505369,neg,ns,0.03550213,0.0000423,0.0000993,0.425872686,0.670496145,pos,ns,0.109448361,Prrx1,Prrx1_Exon,1,163312486,163312535,163312486,163312487,50,+,CGCCACCATGTCCCCGGCTTCCTCCAGGTCTAGCAGGTGACTGACGGAGA,"Exon (Prrx1-202/Prrx1, exon 1 of 5)",1,163245119,163313672,68554,2,Prrx1-202,1137,Prrx1-202;Prrx1-201;Prrx1-204;Prrx1-203,Prrx1;Prrx1;Prrx1;Prrx1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,11,18933,ENSMUSG00000026586,conserved gene and region,1,163312287,163312621,335,*,335,30,0.689552239,0.785893025,0.089552239,1.24E-21,CpGisland,TRUE,U3,Pr-B
17032,cg19223856,0.0000562,0.00000771,7.290910277,2.58E-12,gain,yes,-0.000023,0.0000131,-1.752385204,0.080696236,neg,ns,0.004045137,0.003838412,1.05385698,0.292769093,pos,ns,0.533474772,0.0000833,0.000132003,0.630885633,0.528580149,pos,ns,0.840748009,Mllt3,Mllt3_Intron,4,88017670,88017719,88017670,88017671,50,+,CGTTTGCTGGCCTCCAGCCCACAATGTCAAGTAGTTCTCTTGCTATTGAA,"Intron (Mllt3-201/Mllt3, intron 2 of 10)",4,87769925,88033364,263440,2,Mllt3-201,15645,Mllt3-201;Mllt3-203;Mllt3-205;Mllt3-206,Mllt3;Mllt3;Mllt3;Mllt3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,13,70122,ENSMUSG00000028496,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5361,cg19807816,0.0000209,0.00000573,3.639585595,0.000319828,gain,ns,-0.0000171,0.00000973,-1.752383987,0.080696445,neg,ns,0.001726595,0.002851385,0.605528502,0.545270944,pos,ns,0.263387644,0.000000224,0.0000981,0.002281526,0.998181075,pos,ns,0.167682464,Lmx1b,Lmx1b_Intron,2,33616771,33616820,33616771,33616772,50,+,CGCCACGCGCCCCGAGGTCTTTCTGAGCAGACTGCTAAGCACTGGCTGTC,"Intron (Lmx1b-201/Lmx1b, intron 2 of 7)",2,33560965,33640608,79644,2,Lmx1b-201,23788,Lmx1b-201;Lmx1b-203;Lmx1b-204;Lmx1b-202,Lmx1b;Lmx1b;Lmx1b;Lmx1b,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,26,16917,ENSMUSG00000038765,conserved gene and region,2,33616662,33616784,123,*,123,19,0.707317073,1.243085106,0.154471545,9.00E-19,CpGisland,TRUE,NA,NRS
21601,cg13199975,0.00000178,0.00000127,1.396387799,0.163596774,gain,ns,0.00000379,0.00000216,1.752281321,0.080714121,pos,ns,0.001131608,0.00063426,1.784139083,0.07537905,pos,ns,1.122749339,-0.0000223,0.0000218,-1.0239324,0.306665552,neg,ns,0.968678658,Syt1,Syt1_Exon,10,108500656,108500705,108500656,108500657,50,-,CGGTGCTGTTGTAGCCCACAAAGACTTTGCCGATGGCATCGTTCTTGCCA,"Exon (Syt1-202/Syt1, exon 12 of 12)",10,108497650,109010975,513326,2,Syt1-202,510270,Syt1-202;Syt1-201,Syt1;Syt1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,5,20979,ENSMUSG00000035864,conserved gene and region,10,108500602,108500696,95,*,95,9,0.642105263,0.931372549,0.094736842,0.000000592,CpGisland,TRUE,U15,NS
11276,cg23623436,0.0000132,0.00000781,1.688355852,0.092348583,gain,ns,0.0000233,0.0000133,1.752156105,0.080735683,pos,ns,-0.006164352,0.003887933,-1.585508996,0.113870247,neg,ns,0.943589736,0.000264747,0.000133706,1.980069868,0.048579678,pos,ns,0.903959895,Gria1,Gria1_Exon,11,57310625,57310674,57310625,57310626,50,+,CGGTTTTGAAACTCAGTGAGCAAGGCGTCTTAGACAAGCTGAAAAGCAAA,"Exon (Gria1-201/Gria1, exon 14 of 16)",11,57011810,57330244,318435,1,Gria1-201,298815,Gria1-201;Gria1-202;Gria1-204,Gria1;Gria1;Gria1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,13,14799,ENSMUSG00000020524,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5348,cg11005692,0.0000282,0.00000494,5.71941353,2.52E-08,gain,yes,-0.0000147,0.00000838,-1.752117527,0.080742327,neg,ns,-0.005800223,0.002456273,-2.361391767,0.018824779,neg,ns,1.725270107,0.000042,0.0000845,0.496699641,0.619752913,pos,ns,0.85666761,Fam53a,Fam53a_Intergenic_downstream,5,33558153,33558202,33558201,33558202,50,-,AGCTGATAAATGGTCCCCTCTTTAAGGGACTTATCTCTTTAGGGCTTGCG,Distal Intergenic,5,33600356,33628912,28557,2,Fam53a-203,70759,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,13,13,74504,ENSMUSG00000037339,conserved gene and region,5,33558201,33558441,241,*,241,16,0.560165975,0.86341245,0.066390042,9.54E-10,CpGisland,TRUE,U15,NS
19850,cg20456866,0.00000076,0.00000117,0.650783084,0.51566858,gain,ns,0.00000348,0.00000198,1.752052244,0.080753571,pos,ns,-0.000294242,0.000581478,-0.506024721,0.613198945,neg,ns,0.212398601,0.0000492,0.00002,2.458661714,0.014491986,pos,ns,0.987849981,Nlgn3,Nlgn3_Exon,X,101307070,101307119,101307118,101307119,50,-,CCCAGGATCCGGCGCTAAGAAACAGGGCGAGGACTTAGCGGATAATGACG,"Exon (Gm21986-201/Gm21986-201, exon 7 of 11)",20,101299168,101325963,26796,1,Nlgn3-202,7902,Nlgn3-202;Nlgn3-203;Nlgn3-206;Nlgn3-201,Nlgn3;Nlgn3;Nlgn3;Nlgn3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,16,245537,ENSMUSG00000031302,conserved gene and region,X,101307059,101307160,102,*,102,9,0.607843137,1.092857143,0.088235294,0.00000109,CpGisland,TRUE,U11,Tr-P
23204,cg23683018,0.0000294,0.00000912,3.220409792,0.001415925,gain,ns,0.0000272,0.0000155,1.752003377,0.080761988,pos,ns,0.010175798,0.004541339,2.240704483,0.025753154,pos,ns,1.589169579,-0.000310469,0.000156176,-1.987941775,0.047697488,neg,ns,0.503595779,Rnf220,Rnf220_Intron,4,117466119,117466168,117466167,117466168,50,-,CCAGAGGACGATTTGTCACCAGGGTTATTAGCATTTCTCCCTGGATATCG,"Intron (Rnf220-201/Rnf220, intron 2 of 14)",4,117271463,117497052,225590,2,Rnf220-201,30884,Rnf220-201;Rnf220-207,Rnf220;Rnf220,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19321,cg11591224,-0.00000158,0.00000122,-1.29191232,0.197349808,loss,ns,-0.00000363,0.00000207,-1.751944371,0.080772154,neg,ns,-0.000317201,0.000607673,-0.521992165,0.602048557,neg,ns,0.22036848,-0.00000706,0.0000209,-0.337699172,0.735818455,neg,ns,0.965900631,Dock7,Dock7_Exon,4,98992414,98992463,98992414,98992415,50,+,CGTCTCTGTGTGCGAAGACATACGATTACAACTTCGATCCATAGCCTATG,"Exon (Dock7-201/Dock7, exon 24 of 49)",4,98936671,99120915,184245,2,Dock7-201,128452,Dock7-201;Dock7-205;Dock7-204;Dock7-202;Dock7-214;Dock7-211;Dock7-206;Dock7-216,Dock7;Dock7;Dock7;Dock7;Dock7;Dock7;Dock7;Dock7,0;0;0;0;0;0;0;2495,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,9,67299,ENSMUSG00000028556,conserved gene but different region,4,98992385,98992567,183,*,183,12,0.464480874,1.22956327,0.065573771,0.000000226,CpGisland,TRUE,NA,NRS
24063,cg23167410,0.0000922,0.00000879,10.48049941,3.36E-22,gain,yes,-0.0000262,0.0000149,-1.75172095,0.080810652,neg,ns,-0.008506533,0.004376572,-1.943652106,0.052842128,neg,ns,1.2770197,0.000341462,0.00015051,2.268701775,0.023973745,pos,ns,0.746395667,Clybl,Clybl_Intron,14,122373660,122373709,122373660,122373661,50,+,CGCTAGTGTGGGTTCTTGTTTGACTGGCACGGCTTATTGGACTATAACAA,"Intron (Clybl-201/Clybl, intron 3 of 7)",14,122181704,122402234,220531,1,Clybl-201,191956,Clybl-201;Clybl-202,Clybl;Clybl,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,13,69634,ENSMUSG00000025545,mapped to different genes,14,122373642,122373780,139,*,139,10,0.532374101,1.034226191,0.071942446,0.00000141,CpGisland,TRUE,U15,NS
1266,cg20274287,-0.000000679,0.00000116,-0.586942109,0.557669787,loss,ns,0.00000344,0.00000197,1.751711488,0.080812283,pos,ns,0.000982772,0.000575946,1.706363056,0.088941992,pos,ns,1.05089315,-0.0000231,0.0000198,-1.165115519,0.244867983,neg,ns,0.976098803,Riok3,Riok3_threeUTR,18,12148891,12148940,12148939,12148940,50,+,ATTAAAGATGATTTCAGGTTTAAAGATCGCTTCAGTAAACTAAATCCACG,3' UTR,18,12128741,12157387,28647,1,Riok3-201,20150,Riok3-201;Riok3-204;Riok3-212;Riok3-205;Riok3-216;Riok3-214;Riok3-217;Riok3-206;Riok3-203;Riok3-210;Riok3-202,Riok3;Riok3;Riok3;Riok3;Riok3;Riok3;Riok3;Riok3;Riok3;Riok3;Riok3,0;0;0;0;0;0;0;0;-474;-3733;-3796,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,4,66878,ENSMUSG00000024404,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3814,cg06338499,0.00000139,0.00000212,0.65779991,0.511154863,gain,ns,0.0000063,0.0000036,1.751581811,0.080834635,pos,ns,-0.000197887,0.001053939,-0.187759702,0.851187865,neg,ns,0.069974577,0.0000379,0.0000362,1.045964567,0.296392269,pos,ns,0.95376538,Celf4,Celf4_Exon,18,25504165,25504214,25504165,25504166,50,-,CGAAAGGGATGGCCATGGGGTTGAACATGCCCATCTGGCCAGCCATCTGC,"Exon (Celf4-202/Celf4, exon 6 of 13)",18,25477632,25753983,276352,2,Celf4-202,249769,Celf4-202;Celf4-201;Celf4-203;Celf4-207;Celf4-206;Celf4-210;Celf4-209,Celf4;Celf4;Celf4;Celf4;Celf4;Celf4;Celf4,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,31,59,108013,ENSMUSG00000024268,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
10451,cg27725275,-0.00000366,0.00000193,-1.893570109,0.059213062,loss,ns,0.00000575,0.00000328,1.751493821,0.080849805,pos,ns,0.001158866,0.000961594,1.20515165,0.229063921,pos,ns,0.640043309,-0.0000029,0.0000331,-0.087738696,0.930141012,neg,ns,0.047954192,Asf1a,Asf1a_fiveUTR,10,53596800,53596849,53596848,53596849,50,-,CTCACTTTGTTCTCCGCCTTTGTCCTAATCCACACCAGCAGGTGGAGCCG,Promoter (<=1kb),10,53596757,53607912,11156,1,Asf1a-204,43,Asf1a-204;Asf1a-201;Asf1a-203;Asf1a-206;Asf1a-205;Mcm9-208;Mcm9-203;Mcm9-201;Mcm9-206;Mcm9-207,Asf1a;Asf1a;Asf1a;Asf1a;Asf1a;Mcm9;Mcm9;Mcm9;Mcm9;Mcm9,0;0;0;-603;0;0;-3639;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,5,66403,ENSMUSG00000019857,mapped to different genes,10,53596540,53596959,420,*,420,52,0.738095238,0.922920893,0.123809524,4.68E-45,CpGisland,TRUE,U1,Pr-A
4298,cg06469241,0.00000728,0.00000443,1.644673496,0.101050779,gain,ns,0.0000132,0.00000752,1.751488254,0.080850765,pos,ns,0.004693969,0.002202501,2.131199937,0.033859141,pos,ns,1.470324059,0.0000106,0.0000757,0.139401949,0.889223053,pos,ns,0.908516943,Cnpy1,Cnpy1_Promoter,5,28245622,28245671,28245670,28245671,50,+,ATTAAGACCAACTGCTGTTTGGATAAATGGTTGGTAATTGCCCATATCCG,Promoter (<=1kb),5,28200819,28245806,44988,2,Cnpy1-205,135,Cnpy1-205,Cnpy1,0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,1,1,269637,ENSMUSG00000044681,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16962,cg15549480,-0.0000502,0.0000192,-2.615780432,0.009338054,loss,ns,0.0000571,0.0000326,1.751098565,0.080917977,pos,ns,0.011604626,0.009556813,1.214277798,0.225565858,pos,ns,0.646726636,-0.000177514,0.000328658,-0.540117391,0.589503874,neg,ns,0.680237082,Zfp423,Zfp423_Intron,8,87707907,87707956,87707907,87707908,50,-,CGTTTGCTGCAATTTGTATAACAGTTTATATATTTATGCTATTTAATGGT,"Intron (Zfp423-203/Zfp423, intron 3 of 5)",8,87661810,87804439,142630,2,Zfp423-203,96483,Zfp423-203;Zfp423-202;Zfp423-201,Zfp423;Zfp423;Zfp423,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,42,53,94187,ENSMUSG00000045333,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27271,cg15353998,0.00000134,0.00000356,0.375726768,0.70737701,gain,ns,-0.0000106,0.00000605,-1.750961985,0.080941544,neg,ns,0.003520036,0.001772905,1.985462747,0.047973837,pos,ns,1.318995545,-0.000033,0.000061,-0.541979954,0.588221664,neg,ns,0.890560634,Prrc2c,Prrc2c_fiveUTR,1,162724770,162724819,162724818,162724819,50,+,TTTTCCCATCCTTTGCTTTTGTGCTCTGGCCTGACTTCTCCGACATTTCG,5' UTR,1,162670725,162740525,69801,2,Prrc2c-202,15706,Prrc2c-202;Prrc2c-210;Prrc2c-209;Prrc2c-201;Prrc2c-211;Prrc2c-203;Prrc2c-205;Prrc2c-204;Prrc2c-214,Prrc2c;Prrc2c;Prrc2c;Prrc2c;Prrc2c;Prrc2c;Prrc2c;Prrc2c;Prrc2c,0;0;0;0;0;0;0;0;5902,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,7,226562,ENSMUSG00000040225,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13660,cg07401901,0.00000734,0.00000393,1.8680968,0.062691825,gain,ns,0.0000117,0.00000667,1.750754592,0.080977342,pos,ns,0.000565535,0.001954675,0.289324399,0.772526541,pos,ns,0.112086591,0.00000779,0.0000672,0.115956438,0.907762145,pos,ns,0.037158083,Daam1,Daam1_fiveUTR,12,71831115,71831164,71831115,71831116,50,-,CGGCTGTGAAGGAAACTGTTTAACCGGATCCCATTGTACCCAGAGTGCAG,Promoter (<=1kb),12,71831116,71952360,121245,1,Daam1-204,0,Daam1-205;Daam1-204;Daam1-203;Daam1-201,Daam1;Daam1;Daam1;Daam1,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,2,208846,ENSMUSG00000034574,conserved gene and region,12,71831024,71831723,700,*,700,58,0.632857143,0.829756795,0.082857143,2.93E-39,CpGisland,TRUE,U1,Pr-A
22472,cg00838881,0.000064,0.0000126,5.069542275,0.000000687,gain,yes,-0.0000376,0.0000215,-1.750677204,0.080990702,neg,ns,0.024312986,0.006287072,3.867140014,0.000134204,pos,ns,3.872234204,-0.000666761,0.000216212,-3.083832256,0.002227413,neg,ns,0.279791723,Gm12830,Gm12830_Intergenic_upstream,4,114779413,114779462,114779461,114779462,50,-,CTGTTTTTATAAGACGCCCAAGAGCATCCTGGGAACAGGCACGGTGGTCG,Distal Intergenic,4,114821722,114856166,34445,1,Gm12830-201,-42309,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,12,26,433746,ENSMUSG00000055198,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21807,cg16350825,0.0000409,0.000011,3.730603752,0.00022713,gain,ns,0.0000326,0.0000186,1.75058442,0.081006724,pos,ns,0.012294174,0.005456321,2.253198667,0.024945358,pos,ns,1.603010261,-0.000443609,0.000187642,-2.364120452,0.018689196,neg,ns,0.529452804,Lmo1,Lmo1_Intergenic_upstream,7,109191308,109191357,109191356,109191357,50,-,CCCACATTTAATCCAACTTTAATCCTAGTCATTAGGAATTAGGCATGCCG,Distal Intergenic,7,109138675,109175207,36533,2,Lmo1-202,-16150,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,34,66,109594,ENSMUSG00000036111,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10804,cg10229373,0.0000158,0.00000428,3.690638351,0.000264184,gain,ns,0.0000127,0.00000727,1.750464071,0.081027509,pos,ns,0.003009788,0.002128403,1.414106017,0.158334278,pos,ns,0.800425055,0.0000858,0.0000732,1.172177545,0.242025809,pos,ns,0.936554688,Gm12507,Gm12507_Intergenic_upstream,4,55480994,55481043,55480994,55480995,50,+,CGGATGTTTTCATCCCTGAGGCTGAAATAACAGCTGAGGCCTGACTACTC,Distal Intergenic,4,55508294,55508708,415,1,Gm12507-201,-27251,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16704,cg21511816,0.0000198,0.00000312,6.327596095,8.70E-10,gain,yes,0.00000928,0.0000053,1.750372335,0.081043355,pos,ns,0.005899496,0.001553706,3.797049167,0.000176156,pos,ns,3.75410328,-0.0000792,0.0000534,-1.483095128,0.139065052,neg,ns,0.055820553,Gpatch2l,Gpatch2l_Intergenic_upstream,12,86211251,86211300,86211299,86211300,50,-,CTGTCACCTCTCATCTCCAAACTAAATCACACCTGGAATTGGAGGAGCCG,Distal Intergenic,12,86241858,86291784,49927,1,Gpatch2l-204,-30607,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,13,17,70373,ENSMUSG00000021254,conserved gene and region,12,86211299,86211440,142,*,142,11,0.612676056,0.830851064,0.077464789,0.00000016,CpGisland,TRUE,U13,Hc-P
17707,cg04364888,-0.0000394,0.0000211,-1.870140433,0.062406607,loss,ns,0.0000627,0.0000358,1.750210794,0.081071266,pos,ns,-0.003513758,0.010493978,-0.334835653,0.737975509,neg,ns,0.131958051,0.0000295,0.000360887,0.081725553,0.934917698,pos,ns,0.612393946,Zic4,Zic4_Intergenic_downstream,9,91398892,91398941,91398940,91398941,50,-,ATCTGCACTATTTCACTTGTCACTTGCACAATATGTTGGCTAAAGGGGCG,Distal Intergenic,9,91382410,91388044,5635,1,Zic4-202,16531,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,55,22774,ENSMUSG00000036972,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21097,cg16177888,0.0000453,0.00000393,11.51808128,8.58E-26,gain,yes,-0.0000117,0.00000668,-1.750167207,0.081078798,neg,ns,0.007008543,0.001956642,3.581923748,0.00039587,pos,ns,3.40244714,0.00000156,0.0000673,0.023250682,0.98146527,pos,ns,0.10915195,Barhl2,Barhl2_Promoter,5,106459607,106459656,106459607,106459608,50,-,CGGCGTATTACTCCTGATTAAGTGCCGTGTCAACCTAATTAGCAGAGTAA,Promoter (1-2kb),5,106452523,106458166,5644,2,Barhl2-201,-1490,Barhl2-201,Barhl2,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,8,27,104382,ENSMUSG00000034384,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
15271,cg06558044,0.000105938,0.0000218,4.867487198,0.0000018,gain,yes,-0.0000647,0.000037,-1.749768101,0.081147793,neg,ns,0.0307183,0.010832322,2.835800219,0.004871706,pos,ns,2.31231894,-0.001139945,0.000372523,-3.060068469,0.002406249,neg,ns,0.325883497,Zfp36l1,Zfp36l1_Exon,12,80109974,80110023,80110022,80110023,50,+,GCGGCACTGGGAAACCCAGCAAAGCTAAAGCTATGCTGGAGGCGGGGACG,"Exon (Zfp36l1-201/Zfp36l1, exon 2 of 2)",12,80107754,80113013,5260,2,Zfp36l1-201,2990,Zfp36l1-201;Zfp36l1-202;Zfp36l1-204;Zfp36l1-203,Zfp36l1;Zfp36l1;Zfp36l1;Zfp36l1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,8,12192,ENSMUSG00000021127,conserved gene but different region,12,80110016,80110382,367,*,367,38,0.667574932,0.944467019,0.103542234,8.67E-30,CpGisland,TRUE,U1,Pr-A
7615,cg15109083,-0.0000273,0.00000791,-3.44919078,0.000640111,loss,ns,-0.0000235,0.0000134,-1.749580096,0.081180311,neg,ns,0.011059318,0.00393488,2.810585961,0.005259786,pos,ns,2.279031914,-0.000032,0.00013532,-0.236651333,0.813083589,neg,ns,0.801645719,Zbtb20,Zbtb20_Intron,16,43466913,43466962,43466961,43466962,50,+,ACAGCCAACCTACTGCCAGTCTTATAGCACCAATATGGCATGCACAGCCG,"Intron (Zbtb20-211/Zbtb20, intron 4 of 4)",16,42907542,43569781,662240,1,Zbtb20-211,559371,Zbtb20-209;Zbtb20-211;Zbtb20-217;Zbtb20-218;Zbtb20-204;Zbtb20-215;Zbtb20-201;Zbtb20-203;Zbtb20-214;Zbtb20-213;Zbtb20-219;Zbtb20-216,Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,98,56490,ENSMUSG00000022708,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12439,cg21947307,-0.00000801,0.00000453,-1.769370886,0.077815118,loss,ns,-0.0000135,0.00000769,-1.7495504,0.081185448,neg,ns,0.001619165,0.002253139,0.71862632,0.472912483,pos,ns,0.325219222,-0.000366125,0.0000775,-4.72508724,0.00000349,neg,ns,0.932432891,Mtmr10,Mtmr10_threeUTR,7,64337943,64337992,64337943,64337944,50,-,CGAAGCATTTTAGGAACACCATTAAGCAAATTTTTAAGTGGGGCCAAAAT,3' UTR,7,64287670,64340806,53137,1,Mtmr10-201,50273,Mtmr10-201;Mtmr10-202,Mtmr10;Mtmr10,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,1,233315,ENSMUSG00000030522,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3683,cg06069115,0.0000554,0.0000087,6.361622464,7.16E-10,gain,yes,-0.0000259,0.0000148,-1.749390268,0.081213155,neg,ns,-0.006583336,0.004332314,-1.519589085,0.12963351,neg,ns,0.88728272,0.000371508,0.000148988,2.493542482,0.013168621,pos,ns,0.849835098,Gm47909,Gm47909_Intergenic_downstream,14,24997947,24997996,24997947,24997948,50,+,CGACTAACCACAGTGACAAGTCTCAAGAGTGCACCTTGTCAGGCTGTGAA,Distal Intergenic,14,25089939,25090406,468,2,Gm47909-201,92410,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,13,17,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7489,cg06631053,-0.00000614,0.00000435,-1.410672009,0.159344023,loss,ns,-0.0000129,0.0000074,-1.749376536,0.081215531,neg,ns,-0.0012697,0.002167095,-0.585899579,0.558369314,neg,ns,0.253078457,0.000056,0.0000745,0.751850726,0.452711276,pos,ns,0.882743699,Mrps9,Mrps9_Intron,1,42888493,42888542,42888493,42888494,50,+,CGCTTTTTGTTGACCTTGGGCAAATGAGCTTCTTGCCCTGGCAGAAATGA,"Intron (Mrps9-201/Mrps9, intron 5 of 10)",1,42851233,42905682,54450,1,Mrps9-201,37260,Mrps9-201;Mrps9-202;Mrps9-203;Mrps9-204;Mrps9-206,Mrps9;Mrps9;Mrps9;Mrps9;Mrps9,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,12,69527,ENSMUSG00000060679,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4349,cg21154081,0.0000562,0.00000495,11.3463032,3.45E-25,gain,yes,-0.0000147,0.00000841,-1.749095952,0.081264098,neg,ns,0.004923716,0.002465252,1.997246713,0.046672189,pos,ns,1.33094183,-0.0000386,0.0000848,-0.454875592,0.649517125,neg,ns,0.044650661,Fgf12,Fgf12_Intron,16,28447224,28447273,28447224,28447225,50,+,CGCAATCCTACGTGATTGAGGTTTGGATGAGAAATTCTCAGAGGCAGAGC,"Intron (Fgf12-205/Fgf12, intron 1 of 4)",16,28162354,28753068,590715,2,Fgf12-205,305795,Fgf12-201;Fgf12-205;Fgf12-202;Fgf12-204,Fgf12;Fgf12;Fgf12;Fgf12,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,5,14167,ENSMUSG00000022523,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
14718,cg18221275,-0.0000313,0.0000151,-2.077252755,0.038601348,loss,ns,0.0000447,0.0000256,1.74907438,0.081267833,pos,ns,0.009832956,0.007492792,1.312322094,0.190382309,pos,ns,0.72037341,-0.000403493,0.000257676,-1.565888531,0.118394906,neg,ns,0.697050032,Rnf165,Rnf165_threeUTR,18,77458403,77458452,77458451,77458452,50,-,GTTTGTCATCGTACCAATGCATGCAAAGCATTCCACTCCCAGAAACAACG,3' UTR,18,77456110,77565136,109027,2,Rnf165-201,106684,Rnf165-201;Rnf165-202;Rnf165-207,Rnf165;Rnf165;Rnf165,0;0;8696,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,10,21,225743,ENSMUSG00000025427,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10447,cg14318480,-0.0000145,0.00000691,-2.091032805,0.03733904,loss,ns,0.0000205,0.0000117,1.748897485,0.081298466,pos,ns,0.002307688,0.003441647,0.670518551,0.503026502,pos,ns,0.298409133,-0.0000884,0.000118358,-0.74708968,0.455575694,neg,ns,0.856197893,Npas3,Npas3_Intron,12,53567105,53567154,53567153,53567154,50,-,AGTGAACTTGGCATCCATCCACTGTGACTGAAATAACATGAAATTTTTCG,"Intron (Npas3-204/Npas3, intron 2 of 10)",12,53248157,54069532,821376,1,Npas3-204,318948,Npas3-204;Npas3-201;Npas3-203,Npas3;Npas3;Npas3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,83,103,27386,ENSMUSG00000021010,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10591,cg08295638,-0.00000381,0.00000546,-0.696756365,0.486477409,loss,ns,0.0000162,0.00000928,1.748847003,0.08130721,pos,ns,0.009587334,0.002719826,3.524980155,0.000487376,pos,ns,3.312135673,-0.000278202,0.0000935,-2.974322091,0.003166968,neg,ns,0.900085118,Faf2,Faf2_Exon,13,54645255,54645304,54645303,54645304,50,+,GATGGGGTTATTACTTGATAATGCTTCCATTCCGGTTTACCTATTACACG,"Exon (Faf2-203/Faf2, exon 4 of 11)",13,54621784,54664063,42280,1,Faf2-203,23471,Faf2-203;Faf2-209;Faf2-204;Faf2-201;Faf2-206;Faf2-205;Faf2-202;Faf2-208,Faf2;Faf2;Faf2;Faf2;Faf2;Faf2;Faf2;Faf2,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,6,76577,ENSMUSG00000025873,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23337,cg12902457,-0.00000512,0.00000347,-1.476399449,0.140851751,loss,ns,0.0000103,0.00000589,1.748833264,0.08130959,pos,ns,0.003431643,0.001726761,1.98732912,0.047765658,pos,ns,1.320884233,-0.000104831,0.0000594,-1.765334722,0.078491995,neg,ns,0.937389059,Dnah11,Dnah11_Intron,12,117943798,117943847,117943846,117943847,50,-,ATATCTTCTCAAACACAGATTTAATGTGCTATTGATGAAACCATTACTCG,"Intron (Dnah11-204/Dnah11, intron 33 of 51)",12,117877982,118060303,182322,2,Dnah11-204,116456,Dnah11-204;Dnah11-201,Dnah11;Dnah11,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,3,13411,ENSMUSG00000018581,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26744,cg09046840,-0.00000305,0.00000357,-0.854190992,0.393658771,loss,ns,0.0000106,0.00000607,1.748653577,0.081340719,pos,ns,-0.000130711,0.001778478,-0.073495911,0.941458897,neg,ns,0.026198636,-0.0000724,0.0000612,-1.184538399,0.23710737,neg,ns,0.912772591,Dnajc11,Dnajc11_Exon,4,151968584,151968633,151968584,151968585,50,-,CGCAGATTGAAATTAATAAAATGCACATATCCCAGTCCATTGAGGTAAAG,"Exon (Dnajc11-201/Dnajc11, exon 5 of 16)",4,151933691,151982137,48447,1,Dnajc11-201,34893,Dnajc11-201;Dnajc11-208;Dnajc11-204;Dnajc11-207;Dnajc11-210;Dnajc11-202;Dnajc11-209;Dnajc11-211;Dnajc11-206,Dnajc11;Dnajc11;Dnajc11;Dnajc11;Dnajc11;Dnajc11;Dnajc11;Dnajc11;Dnajc11,0;0;0;0;0;0;0;-1113;-1182,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,230935,ENSMUSG00000039768,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5895,cg06023161,0.0000547,0.0000142,3.856568683,0.00013986,gain,ns,-0.0000421,0.0000241,-1.748078941,0.081440335,neg,ns,0.017151007,0.007058548,2.429820746,0.015673841,pos,ns,1.804824574,-0.00073036,0.000242743,-3.008781577,0.002838063,neg,ns,0.18188633,Prrc2a,Prrc2a_fiveUTR,17,35162977,35163026,35162977,35162978,50,+,CGGACATTGCGCTGGAAGCTCATTGAGTATGTTGGGTCCTGCAGGCACCT,5' UTR,17,35149076,35164897,15822,2,Prrc2a-201,1871,Prrc2a-201;Prrc2a-206;Prrc2a-203,Prrc2a;Prrc2a;Prrc2a,0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,13,53761,ENSMUSG00000024393,conserved gene and region,17,35162847,35163042,196,*,196,12,0.556122449,0.8,0.06122449,0.000000472,CpGisland,TRUE,NA,NRS
10572,cg00449726,0.00000631,0.00000297,2.12457679,0.034412997,gain,ns,0.00000882,0.00000505,1.747689426,0.081507916,pos,ns,-0.000431875,0.001478428,-0.292117416,0.77039225,neg,ns,0.113288095,0.0000779,0.0000508,1.532130956,0.126509967,pos,ns,0.938722931,Gm7557,Gm7557_Intergenic_upstream,12,54481336,54481385,54481384,54481385,50,-,AGTGTCCTAAACCAAATTAACCATCGAAATAGATTATCATAAAAATAACG,Distal Intergenic,12,54429534,54430398,865,2,Gm7557-201,-50987,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,2,665256,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15440,cg20844373,-0.000000635,0.00000228,-0.278843696,0.780550701,loss,ns,-0.00000676,0.00000387,-1.747349624,0.08156691,neg,ns,0.001769379,0.001133725,1.560676709,0.119620311,pos,ns,0.922195071,-0.0000112,0.000039,-0.28846153,0.773186255,neg,ns,0.881674838,Tnrc6b,Tnrc6b_Exon,15,80890216,80890265,80890264,80890265,50,+,CAACGTCAGCCTTGGAGCAATCGGCACAGGGCTCAACCCCCAAAACTTCG,"Exon (Tnrc6b-205/Tnrc6b, exon 2 of 3)",15,80711313,80941085,229773,1,Tnrc6b-201,178903,Tnrc6b-201;Tnrc6b-207;Tnrc6b-208;Tnrc6b-205,Tnrc6b;Tnrc6b;Tnrc6b;Tnrc6b,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,20,24,213988,ENSMUSG00000047888,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7298,cg06479604,0.0000924,0.00000691,13.36357921,1.77E-32,gain,yes,-0.0000205,0.0000117,-1.747149697,0.081601636,neg,ns,0.009171914,0.003440834,2.665607441,0.008087686,pos,ns,2.092175725,-0.000103477,0.00011833,-0.874476631,0.382535709,neg,ns,0.09358733,Gabra1,Gabra1_fiveUTR,11,42182462,42182511,42182462,42182463,50,+,CGGTGACTTCATGCCAGAGAGATTTTATTTTAGAAAGGAAGGTGGTACCA,Promoter (<=1kb),11,42130939,42182930,51992,2,Gabra1-201,419,Gabra1-205;Gabra1-201;Gabra1-207;Gabra1-208;Gabra1-203;Gabra1-202;Gabra1-204;Gabra1-206,Gabra1;Gabra1;Gabra1;Gabra1;Gabra1;Gabra1;Gabra1;Gabra1,-299;0;-2619;-358;-2506;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,3,14394,ENSMUSG00000010803,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17748,cg23292230,0.0000231,0.00000438,5.258359094,0.000000271,gain,yes,0.000013,0.00000745,1.747123697,0.081606152,pos,ns,-0.001661636,0.002181743,-0.761609284,0.446872236,neg,ns,0.349816627,0.00015699,0.000075,2.092357298,0.037219592,pos,ns,0.91201333,Fto,Fto_Intron,8,91622510,91622559,91622510,91622511,50,+,CGAGTGAAAAATGATCAGAATATTAGACTCATCTAGCCCACATTAAGGAG,"Intron (Fto-201/Fto, intron 8 of 8)",8,91313525,91668439,354915,1,Fto-201,308985,Fto-201;Fto-205,Fto;Fto,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,26,26383,ENSMUSG00000055932,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24226,cg01171336,0.0000419,0.0000131,3.192382317,0.001555868,gain,ns,-0.000039,0.0000223,-1.747077214,0.081614228,neg,ns,-0.013038227,0.006537787,-1.994287313,0.046996241,neg,ns,1.327936877,0.000165839,0.000224834,0.737604808,0.461312574,pos,ns,0.733544468,Gm12902,Gm12902_Intergenic_downstream,4,124035840,124035889,124035840,124035841,50,-,CGAACATTTCTTGCTAAGTGCATTCTGATGCCACATTGAAACGCAAAATA,Distal Intergenic,4,123926234,123926555,322,1,Gm12902-201,109655,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,34,34,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22444,cg02610843,-0.0000715,0.0000149,-4.783372825,0.00000267,loss,ns,0.0000444,0.0000254,1.747037979,0.081621045,pos,ns,-0.003917651,0.007437189,-0.526765058,0.598733465,neg,ns,0.222766467,0.00039306,0.000255764,1.536805143,0.125361041,pos,ns,0.389488593,Fam222a,Fam222a_Intron,5,114571828,114571877,114571828,114571829,50,+,CGCCCGCCGCCCTGATTGGTTGCTAAGTGATTTGCATCCAAGGTAATCAC,"Intron (Fam222a-201/Fam222a, intron 1 of 2)",5,114568016,114613220,45205,1,Fam222a-201,3812,Fam222a-201;Fam222a-202,Fam222a;Fam222a,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,16,433940,ENSMUSG00000041930,conserved gene and region,5,114571569,114571856,288,*,288,32,0.645833333,1.067531565,0.111111111,3.20E-26,CpGisland,TRUE,NA,NRS
2364,cg09956388,-0.0000553,0.00000979,-5.646793481,0.000000037,loss,yes,0.000029,0.0000166,1.747028355,0.081622717,pos,ns,-0.00087859,0.00487077,-0.180380103,0.856972034,neg,ns,0.067033351,-0.000402522,0.000167505,-2.403042045,0.016846653,neg,ns,0.683880151,Meis1,Meis1_Intergenic_upstream,11,19174642,19174691,19174690,19174691,50,-,TTTGATAACAATTTCTGCATGAAAATTGACTTTATATTTCATTTTTCCCG,Distal Intergenic,11,18879817,19018985,139169,2,Meis1-206,-155706,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,88,17268,ENSMUSG00000020160,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22589,cg17410330,-0.00000188,0.000000956,-1.967931867,0.049966922,loss,ns,0.00000284,0.00000162,1.74701175,0.081625603,pos,ns,0.000443603,0.000475946,0.93204425,0.352038971,pos,ns,0.453409258,-0.00000979,0.0000164,-0.598052737,0.550241407,neg,ns,0.971601507,Wwox,Wwox_Intron,8,115303408,115303457,115303408,115303409,50,+,CGCTCTGACAGCTGCATAATTAAATACTGGAGTGTCAGCGATAATTTATT,"Intron (Wwox-201/Wwox, intron 8 of 8)",8,114439655,115352708,913054,1,Wwox-201,863753,Wwox-201;Wwox-209,Wwox;Wwox,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,32,32,80707,ENSMUSG00000004637,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5761,cg20260177,0.0000492,0.0000127,3.86073451,0.000137605,gain,ns,0.0000378,0.0000216,1.746891591,0.081646484,pos,ns,0.013556049,0.00633756,2.139001148,0.03321661,pos,ns,1.478644693,-0.000398359,0.000217948,-1.827770143,0.068545126,neg,ns,0.159356522,Sox2,Sox2_Intron,3,34661937,34661986,34661937,34661938,50,+,CGCTCGCATATTGTTTGATTACTAATTCGAGTTAATATGATCTTTATGGC,"Intron (Sox2ot-203/Sox2ot-203, intron 3 of 3)",3,34650405,34652461,2057,1,Sox2-201,11532,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,34,62,20674,ENSMUSG00000074637,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
19353,cg08464601,0.000106643,0.0000104,10.28967369,1.48E-21,gain,yes,-0.0000308,0.0000176,-1.746880137,0.081648475,neg,ns,-0.002771686,0.005158296,-0.53732589,0.591427999,neg,ns,0.22809812,-0.0000151,0.000177393,-0.085066422,0.932263496,neg,ns,0.535529726,Dnajc22,Dnajc22_Promoter,15,99093688,99093737,99093736,99093737,50,-,AATTAGGCGGCCAGACAAAGAGCAGCTTCGGATGGATGAGGGTCCCAGCG,Promoter (<=1kb),15,99093170,99100917,7748,1,Dnajc22-202,518,Dnajc22-202,Dnajc22,0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,6,8,72778,ENSMUSG00000038009,conserved gene and region,15,99093593,99093959,367,*,367,36,0.697547684,0.811348563,0.098092643,2.41E-27,CpGisland,TRUE,U3,Pr-B
20588,cg12835327,-0.00000314,0.00000268,-1.170166499,0.242832787,loss,ns,0.00000797,0.00000456,1.746830864,0.081657039,pos,ns,0.003127695,0.00133592,2.341229833,0.019853653,pos,ns,1.70215958,-0.00000645,0.0000459,-0.140349482,0.888475018,neg,ns,0.088191774,Wnt3,Wnt3_fiveUTR,11,103774139,103774188,103774139,103774140,50,+,CGGGTGGAGGTGCGCTTCTGACAAGCCCGAAAGTCATTTCCAATCTCAAG,Promoter (<=1kb),11,103774150,103817957,43808,1,Wnt3-201,0,Wnt3-201,Wnt3,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,9,22415,ENSMUSG00000000125,conserved gene and region,11,103774063,103774167,105,*,105,12,0.733333333,0.861833105,0.114285714,3.54E-10,CpGisland,TRUE,U3,Pr-B
18104,cg18353441,-0.00000244,0.00000297,-0.822335018,0.411518311,loss,ns,0.00000882,0.00000505,1.746585512,0.081699695,pos,ns,0.004800861,0.001478652,3.246782879,0.00129498,pos,ns,2.887736858,-0.000153331,0.0000509,-3.015318433,0.002779325,neg,ns,0.120729536,Mbtd1,Mbtd1_fiveUTR,11,93886360,93886409,93886360,93886361,50,-,CGGGGAGCACGGACAACCCCTACCCATGAGGCCCTGATGGAAAACACAAA,Promoter (<=1kb),11,93885852,93946985,61134,1,Mbtd1-205,508,Mbtd1-205;Mbtd1-203;Mbtd1-210;Mbtd1-207;Mbtd1-211;Mbtd1-202;Mbtd1-206;Mbtd1-201;Utp18-201;Utp18-202,Mbtd1;Mbtd1;Mbtd1;Mbtd1;Mbtd1;Mbtd1;Mbtd1;Mbtd1;Utp18;Utp18,0;0;0;0;0;0;0;0;-594;-594,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,7,103537,ENSMUSG00000059474,conserved gene and region,11,93886219,93886374,156,*,156,16,0.769230769,0.709292413,0.102564103,1.06E-12,CpGisland,TRUE,U1,Pr-A
12521,cg04750290,-0.0000351,0.00000857,-4.096216736,0.0000537,loss,ns,0.0000254,0.0000146,1.746547139,0.081706368,pos,ns,0.010468854,0.004265366,2.454385879,0.014662061,pos,ns,1.833804976,-0.000542309,0.000146686,-3.697087701,0.000257842,neg,ns,0.792867957,Gm13578,Gm13578_Intergenic_downstream,2,64856682,64856731,64856730,64856731,50,+,GCTACATGATGTATGACTCTTCATAAACCAATTTTTCAAAGATATACACG,Distal Intergenic,2,64867999,64868588,590,2,Gm13578-201,11857,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,10,667291,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14770,cg25135889,-0.0000381,0.0000167,-2.277004889,0.02346706,loss,ns,-0.0000496,0.0000284,-1.746471505,0.081719522,neg,ns,0.067201891,0.008326476,8.070868475,1.55E-14,pos,yes,13.80902213,-0.001899502,0.000286347,-6.633570029,1.46E-10,neg,yes,0.50752921,Gm11146,Gm11146_Intron,16,77594288,77594337,77594288,77594289,50,+,CGCCTTTATTCTGGGTTTTTGGCAGGCCACCAGGAGGCTGTCCCTTTCAC,"Intron (Mir99ahg-207/Mir99ahg-207, intron 7 of 7)",16,77588578,77602094,13517,2,Gm11146-201,7757,Gm11146-201,Gm11146,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,21,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18335,cg23268451,0.00000178,0.00000737,0.242091459,0.808869371,gain,ns,0.0000219,0.0000125,1.746338495,0.081742659,pos,ns,0.010680179,0.003668787,2.91109257,0.003862711,pos,ns,2.413107741,-0.000294549,0.000126169,-2.334554227,0.020205019,neg,ns,0.918752119,Tbca,Tbca_Intron,13,94817271,94817320,94817319,94817320,50,+,CAGCAACTGCAGTCGGAAAAGACTATTAGCGAGAATCATTATCAATAGCG,"Intron (Tbca-201/Tbca, intron 1 of 3)",13,94788910,94842922,54013,1,Tbca-201,28361,Tbca-201;Tbca-203;Tbca-204,Tbca;Tbca;Tbca,0;0;-414,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,9,21371,ENSMUSG00000042043,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25273,cg13192954,-0.00000159,0.00000914,-0.174406447,0.861659892,loss,ns,-0.0000271,0.0000155,-1.746162306,0.081773314,neg,ns,0.016177481,0.004549698,3.555725965,0.000435759,pos,ns,3.3607533,-0.000440669,0.000156464,-2.816426755,0.005167471,neg,ns,0.604729849,Pdik1l,Pdik1l_fiveUTR,4,134284492,134284541,134284540,134284541,50,-,CTCCCGTATTAGATCGTACTTTGGCTGGCTACTCACCATCTTCAAGGTCG,5' UTR,4,134275002,134287239,12238,2,Pdik1l-203,2698,Pdik1l-203;Pdik1l-201;Pdik1l-202;Pdik1l-206;Pdik1l-204;Pdik1l-205,Pdik1l;Pdik1l;Pdik1l;Pdik1l;Pdik1l;Pdik1l,0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,8,230809,ENSMUSG00000050890,conserved gene and region,4,134284376,134284541,166,*,166,11,0.493975904,1.129251701,0.06626506,0.000000769,CpGisland,TRUE,U10,Tr-S
27835,cg01270409,-0.0000274,0.0000118,-2.316170045,0.021200989,loss,ns,0.0000351,0.0000201,1.745989883,0.081803324,pos,ns,-0.009629062,0.005887011,-1.635645389,0.102928712,neg,ns,0.987463463,0.000292928,0.000202454,1.446885723,0.14893933,pos,ns,0.762223303,Esrrg,Esrrg_Intron,1,188185296,188185345,188185344,188185345,50,+,GCATAATGATCCTGAAGCAGTATGGAACAATTAATTAAGATTTTCAACCG,"Intron (Esrrg-203/Esrrg, intron 6 of 7)",1,187609029,188214386,605358,1,Esrrg-203,576267,Esrrg-203;Esrrg-201;Esrrg-202,Esrrg;Esrrg;Esrrg,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,60,26381,ENSMUSG00000026610,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27355,cg04317985,0.0000598,0.0000135,4.440102881,0.0000125,gain,ns,-0.0000399,0.0000229,-1.745899186,0.081819113,neg,ns,0.003066732,0.006698363,0.457833057,0.647393118,pos,ns,0.188831921,0.000246241,0.000230356,1.068959601,0.285919527,pos,ns,0.319137032,Cdh22,Cdh22_Promoter,2,165238650,165238699,165238650,165238651,50,+,CGCCTTTCATCTCGCCAGCACATTTGTAAAACTGCGCAGACTGAAGGGCC,Promoter (3-4kb),2,165111507,165234853,123347,2,Cdh22-201,-3797,Cdh22-201,Cdh22,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,7,23,104010,ENSMUSG00000053166,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
26042,cg02043372,0.00000123,0.00000197,0.625086061,0.532374419,gain,ns,0.00000584,0.00000335,1.745853525,0.081827063,pos,ns,0.00317034,0.000980273,3.234139142,0.001351715,pos,ns,2.869114767,-0.0000439,0.0000337,-1.302003955,0.193881629,neg,ns,0.951707252,Gm2574,Gm2574_Intergenic_downstream,3,143378299,143378348,143378347,143378348,50,+,TGTTAAATCCATACTCAATTTAGCCAAATGCCATTAGAATATGCAATACG,Distal Intergenic,3,142962611,142963612,1002,1,Gm2574-201,415688,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,19,100040053,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1580,cg22608267,-0.00000444,0.00000407,-1.091164131,0.276048026,loss,ns,-0.0000121,0.00000692,-1.745802657,0.08183592,neg,ns,-0.004883691,0.002026158,-2.4103214,0.016520418,neg,ns,1.781978961,0.0000432,0.0000697,0.620266488,0.53553805,pos,ns,0.919930973,Zfp521,Zfp521_Intron,18,13790549,13790598,13790597,13790598,50,+,TGGAAGAGATTCTGCATTACTACACCTCAGTGCCTGCCTGGTTCCCTTCG,"Intron (Zfp521-201/Zfp521, intron 5 of 7)",18,13687013,13972787,285775,2,Zfp521-201,182189,Zfp521-201;Zfp521-205;Zfp521-204,Zfp521;Zfp521;Zfp521,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,81,225207,ENSMUSG00000024420,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9430,cg21908378,-0.0000756,0.0000227,-3.321543638,0.001002227,loss,ns,0.0000675,0.0000386,1.745607476,0.081869912,pos,ns,0.029930278,0.011322171,2.6435105,0.008622321,pos,ns,2.064375832,-0.000510618,0.000389369,-1.311399775,0.190693192,neg,ns,0.311888667,Zbtb16,Zbtb16_Intron,9,48736519,48736568,48736567,48736568,50,+,ACTGTACAGCCCATAAAACTCCAAACAGCCTCCAGACACTGCCGCAATCG,"Intron (Zbtb16-201/Zbtb16, intron 3 of 6)",9,48654297,48835945,181649,2,Zbtb16-201,99377,Zbtb16-201;Zbtb16-202,Zbtb16;Zbtb16,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,37,235320,ENSMUSG00000066687,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
18020,cg05346606,-0.00000226,0.00000213,-1.061594185,0.28924629,loss,ns,0.00000632,0.00000362,1.745451206,0.081897136,pos,ns,0.00118905,0.001061573,1.120082684,0.263545557,pos,ns,0.579144301,0.00000257,0.0000365,0.070525467,0.943820905,pos,ns,0.945345885,Pola1,Pola1_Intron,X,93310487,93310536,93310487,93310488,50,+,CGGCCAGCCACTGGATCAGCTTCAGCGGTATCTAACAAGGTGTAAATACA,"Intron (Pola1-201/Pola1, intron 36 of 36)",20,93304767,93632155,327389,2,Pola1-201,321619,Pola1-201,Pola1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,59,62,18968,ENSMUSG00000006678,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14087,cg15834661,0.0000491,0.00000616,7.973629279,2.99E-14,gain,yes,0.0000183,0.0000105,1.745388869,0.081907998,pos,ns,0.009279362,0.003066734,3.02581212,0.002687361,pos,ns,2.570674036,0.0000499,0.000105465,0.473093857,0.636479161,pos,ns,0.184227001,Evx2,Evx2_threeUTR,2,74654188,74654237,74654236,74654237,50,-,TCCTAATGACTTCCCTTAGCGGGTTGTTAGTACTTGACAGCAGGTCTCCG,3' UTR,2,74652991,74659557,6567,2,Evx2-201,5320,Evx2-201;Evx2-202,Evx2;Evx2,0;5182,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,8,35,14029,ENSMUSG00000001815,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
20656,cg20038100,0.00000623,0.00000824,0.756208023,0.450098749,gain,ns,0.0000244,0.000014,1.745355738,0.081913771,pos,ns,0.030912355,0.004098887,7.541645898,5.18E-13,pos,yes,12.28608714,-0.000652386,0.00014096,-4.628150997,0.00000543,neg,ns,0.849835584,Adamts6,Adamts6_threeUTR,13,104369645,104369694,104369693,104369694,50,+,TTTTTTCAGATTTCTTAAACTCGGTGATTCAATAAGTGGTTCATGAATCG,3' UTR,13,104287835,104496695,208861,1,Adamts6-207,81810,Adamts6-207;Adamts6-202;Adamts6-201;Adamts6-206;Adamts6-203;Adamts6-204;Adamts6-205,Adamts6;Adamts6;Adamts6;Adamts6;Adamts6;Adamts6;Adamts6,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,19,31,108154,ENSMUSG00000046169,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23576,cg16355947,0.000019,0.00000557,3.420981461,0.000707608,gain,ns,0.0000165,0.00000946,1.745289662,0.081925287,pos,ns,0.010268669,0.00277018,3.706860248,0.000248505,pos,ns,3.604665351,-0.000199609,0.0000953,-2.095270401,0.036958027,neg,ns,0.120601018,Cbx8,Cbx8_Promoter,11,119042877,119042926,119042877,119042878,50,+,CGATACAGCTGTTTCTGTTTAAGCTTAAATACTTTCCAACAGTTTGGGCA,Promoter (1-2kb),11,119036305,119040969,4665,2,Cbx8-201,-1908,Cbx8-201;Cbx8-202;Cbx8-203,Cbx8;Cbx8;Cbx8,0;-2046;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,4,6,30951,ENSMUSG00000025578,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
11320,cg14587979,0.00000556,0.00000458,1.214593565,0.225445514,gain,ns,0.0000136,0.00000778,1.745238763,0.081934158,pos,ns,0.005498762,0.002279591,2.41217004,0.016438462,pos,ns,1.784138826,-0.000201441,0.0000784,-2.569560516,0.010650026,neg,ns,0.896669068,Gm13532,Gm13532_Intergenic_downstream,2,57567463,57567512,57567463,57567464,50,+,CGAAAAGGGTTAAAGAAGTTTTGACTATTTTACTACATGAATACCAGCAG,Distal Intergenic,2,57628989,57629228,240,2,Gm13532-201,61716,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,6,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25165,cg25343081,-0.00000374,0.00000184,-2.034607071,0.042741168,loss,ns,0.00000545,0.00000312,1.745058831,0.081965525,pos,ns,0.002251036,0.000914965,2.460242747,0.014429544,pos,ns,1.840747406,-0.0000947,0.0000315,-3.009630483,0.002830371,neg,ns,0.961411832,Ctbp2,Ctbp2_Intergenic_upstream,7,133223985,133224034,133224033,133224034,50,+,TAAAAATTAGTTGATTAGCTTGTTAGGGCACATTTTAACTGCTAGCTCCG,Distal Intergenic,7,133025702,133124354,98653,2,Ctbp2-218,-99631,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,4,13017,ENSMUSG00000030970,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21380,cg11466301,0.0000677,0.00000935,7.242457602,3.51E-12,gain,yes,-0.0000277,0.0000159,-1.745009046,0.081974206,neg,ns,-0.005050143,0.004653646,-1.085201248,0.278675722,neg,ns,0.554900865,0.000312376,0.000160039,1.95188167,0.051852399,pos,ns,0.756081315,Wwp2,Wwp2_Intron,8,107544958,107545007,107545006,107545007,50,+,TCTGGGCGTGGGCAGGGCTTGTGGGAATGATTTCATTGGAAAGGCCTGCG,"Intron (Wwp2-201/Wwp2, intron 10 of 23)",8,107436365,107558595,122231,1,Wwp2-201,108593,Wwp2-201;Wwp2-204;Wwp2-203;Wwp2-205,Wwp2;Wwp2;Wwp2;Wwp2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,6,66894,ENSMUSG00000031930,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7959,cg12704157,0.0000267,0.000003,8.906199921,4.57E-17,gain,yes,-0.00000888,0.00000509,-1.744804269,0.082009919,neg,ns,0.001522432,0.001490744,1.021256699,0.307929145,pos,ns,0.511549203,0.0000144,0.0000513,0.280981664,0.778911906,pos,ns,0.031385227,Pax2,Pax2_Intergenic_upstream,19,44670437,44670486,44670485,44670486,50,+,CCTCCGGTTCCCATGTTGTCGAGGCATGCTGGGAGTACAAGTTCCGAGCG,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-85559,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,19,44670410,44670516,107,*,107,13,0.672897196,1.074131274,0.121495327,2.26E-11,CpGisland,TRUE,U13,Hc-P
20295,cg09573865,0.000114398,0.0000101,11.35929007,3.11E-25,gain,yes,-0.0000299,0.0000171,-1.744795594,0.082011432,neg,ns,0.01043748,0.00501236,2.08234837,0.038130386,pos,ns,1.418728799,-0.000103788,0.000172375,-0.602108913,0.547541768,neg,ns,0.246509019,Hoxc5,Hoxc5_Exon,15,102991096,102991145,102991096,102991097,50,+,CGAGCGTGGTGCAATATCCCGACTGTAAATCCTCCGCCAACACTAACAGT,"Exon (Hoxc8-201/Hoxc8, exon 1 of 2)",15,102967443,103015676,48234,1,Hoxc5-202,23653,Hoxc5-202;Hoxc8-201;Hoxc8-202,Hoxc5;Hoxc8;Hoxc8,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,72,134,15424,ENSMUSG00000022485,conserved gene and region,15,102990435,102991303,869,*,869,73,0.63406214,0.844205792,0.084004603,1.12E-49,CpGisland,TRUE,U13,Hc-P
765,cg05109804,-0.00000359,0.00000319,-1.128038641,0.260175876,loss,ns,-0.00000944,0.00000541,-1.744633773,0.082039663,neg,ns,-0.00111782,0.00158523,-0.705147086,0.481248184,neg,ns,0.317630897,0.000091,0.0000545,1.669280128,0.096071373,pos,ns,0.927812827,Arglu1,Arglu1_Exon,8,8683740,8683789,8683788,8683789,50,-,AGCGTTACCTCTCTAGCTTTTTGTGCGGCAAGCTCAGCTTGTCTCTGTCG,"Exon (Arglu1-201/Arglu1, exon 2 of 4)",8,8665075,8690521,25447,2,Arglu1-201,6732,Arglu1-201;Arglu1-204;Arglu1-203;Arglu1-202,Arglu1;Arglu1;Arglu1;Arglu1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,7,234023,ENSMUSG00000040459,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18167,cg16825463,-0.00000383,0.00000144,-2.653180806,0.008384559,loss,ns,0.00000427,0.00000245,1.743375496,0.082259449,pos,ns,0.001077616,0.000717873,1.50112367,0.13434141,pos,ns,0.871790097,-0.0000428,0.0000247,-1.733413885,0.084016449,neg,ns,0.963030281,Luc7l3,Luc7l3_threeUTR,11,94292456,94292505,94292456,94292457,50,+,CGCTCACAACACCAACGCTGTGTGAGGTATGGTAGTCAGCTGCAATAATT,3' UTR,11,94287890,94321958,34069,2,Luc7l3-209,29453,Luc7l3-209;Luc7l3-205;Luc7l3-203;Luc7l3-201;Luc7l3-202;Luc7l3-207;Luc7l3-204;Luc7l3-210;Luc7l3-206;Luc7l3-208,Luc7l3;Luc7l3;Luc7l3;Luc7l3;Luc7l3;Luc7l3;Luc7l3;Luc7l3;Luc7l3;Luc7l3,0;0;0;0;0;0;0;5713;6526;7726,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,7,7,67684,ENSMUSG00000020863,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24094,cg15773704,0.0000495,0.00000496,9.977471203,1.63E-20,gain,yes,-0.0000147,0.00000843,-1.743303998,0.082271952,neg,ns,-0.00372462,0.002469762,-1.508088993,0.132550178,neg,ns,0.877619684,0.000350331,0.0000849,4.12470099,0.0000477,pos,ns,0.125706111,Zic2,Zic2_Promoter,14,122475362,122475411,122475362,122475363,50,+,CGCCGCAGCTCCTTTAATACACTTTGGTTCTCCGCCTGGCTTTGGACTCT,Promoter (<=1kb),14,122475435,122479852,4418,1,Zic2-201,-24,Zic2-201;Zic2-202,Zic2;Zic2,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,7,22772,ENSMUSG00000061524,conserved gene and region,14,122474772,122475395,624,*,624,67,0.708333333,0.863801653,0.107371795,2.96E-53,CpGisland,TRUE,U3,Pr-B
6886,cg23346468,-0.00000367,0.00000206,-1.777758249,0.076423807,loss,ns,-0.00000611,0.0000035,-1.742999618,0.082325197,neg,ns,-0.001232459,0.001026226,-1.200961832,0.230682813,neg,ns,0.636984761,-0.00000435,0.0000353,-0.12322474,0.902008987,neg,ns,0.953876188,Npas2,Npas2_Exon,1,39287496,39287545,39287496,39287497,50,+,CGTCGGGACCAGTTCAATGTTCTCATCAAAGAGCTCAGTTCCATGCTCCC,"Exon (Npas2-203/Npas2, exon 3 of 3)",1,39193731,39287615,93885,1,Npas2-203,93765,Npas2-203;Npas2-201,Npas2;Npas2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,18143,ENSMUSG00000026077,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7310,cg13869290,-0.00000299,0.00000609,-0.491088895,0.623711051,loss,ns,-0.000018,0.0000103,-1.742935125,0.082336483,neg,ns,-0.010984029,0.003031593,-3.623187126,0.000339925,neg,ns,3.468617071,0.000357548,0.000104256,3.429515508,0.000686518,pos,ns,0.856074571,Gm8176,Gm8176_Intergenic_upstream,1,42259200,42259249,42259248,42259249,50,-,TCAAACTACAATAAACACAATTCTCCTTTTCTTTCATTAATAATCGCACG,Distal Intergenic,1,42179290,42180388,1099,2,Gm8176-201,-78861,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,13,17,666582,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1680,cg05630810,-0.0000949,0.0000126,-7.558838154,4.63E-13,loss,yes,0.0000372,0.0000213,1.742811038,0.0823582,pos,ns,-0.022035831,0.006250647,-3.525368225,0.00048669,neg,ns,3.3127472,0.000667009,0.000214959,3.102955329,0.002092478,pos,ns,0.790864171,Eya1,Eya1_Intron,1,14306491,14306540,14306539,14306540,50,+,ACTTTAAAACAACTAATCCTCACTTAGGCTGGTCAGCTGAATCCACATCG,"Intron (Eya1-201/Eya1, intron 1 of 17)",1,14168954,14310200,141247,2,Eya1-201,3660,Eya1-201;Eya1-203;Eya1-202;Eya1-209;Eya1-207;Eya1-205;Eya1-206;Eya1-204,Eya1;Eya1;Eya1;Eya1;Eya1;Eya1;Eya1;Eya1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,4,14048,ENSMUSG00000025932,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5131,cg03877398,-0.0000225,0.00000356,-6.326080822,8.78E-10,loss,yes,-0.0000105,0.00000605,-1.742656905,0.082385182,neg,ns,-0.003718867,0.001773339,-2.097098809,0.03679466,neg,ns,1.434215202,0.000087,0.000061,1.425923199,0.154896707,pos,ns,0.915264137,Pik3ca,Pik3ca_fiveUTR,3,32436415,32436464,32436415,32436416,50,+,CGTAAGTGTTACTCAAGAAGCAGAAAGGGAAGAATTTTTTGATGAAACAA,5' UTR,3,32397671,32466107,68437,1,Pik3ca-203,38744,Pik3ca-203;Pik3ca-201;Pik3ca-202,Pik3ca;Pik3ca;Pik3ca,0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,4,18706,ENSMUSG00000027665,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11802,cg06721379,-0.000286199,0.0000256,-11.19817568,1.14E-24,loss,yes,0.0000757,0.0000434,1.742464804,0.082418821,pos,ns,0.063491799,0.012720291,4.991379354,0.000001,pos,ns,5.999287299,-0.003005108,0.00043745,-6.869606065,3.53E-11,neg,yes,0.419357265,Ndst1,Ndst1_Exon,18,60697071,60697120,60697071,60697072,50,-,CGATGCCTTTGTGATAGTTGTGGCCATTAAAAAACTGGATCTCCTCAAAG,Promoter (<=1kb),18,60690057,60697072,7016,2,Ndst1-204,0,Ndst1-202;Ndst1-205;Ndst1-201;Ndst1-204,Ndst1;Ndst1;Ndst1;Ndst1,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,15531,ENSMUSG00000054008,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20149,cg08357743,-0.0000201,0.0000156,-1.284967679,0.199762828,loss,ns,0.0000463,0.0000265,1.742406397,0.08242905,pos,ns,0.004691156,0.007777467,0.603172791,0.546834783,pos,ns,0.262143869,0.000308938,0.000267466,1.155052644,0.248958411,pos,ns,0.966210587,Calcoco1,Calcoco1_Intergenic_upstream,15,102737495,102737544,102737495,102737496,50,+,CGCGAACATTTGGGCCGTGGCCAGCCGCATTAAAGGTTATTACGGAAAAC,Distal Intergenic,15,102706777,102722178,15402,2,Calcoco1-201,-15317,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,20,29,67488,ENSMUSG00000023055,conserved gene but different region,15,102737359,102737627,269,*,269,21,0.565055762,0.991922739,0.078066915,4.85E-14,CpGisland,TRUE,U11,Tr-P
26981,cg25637119,-0.00000444,0.00000498,-0.891030208,0.373603991,loss,ns,-0.0000147,0.00000846,-1.742362598,0.082436722,neg,ns,0.0000933,0.002477641,0.037664913,0.969979094,pos,ns,0.013237626,-0.000126876,0.0000852,-1.48904865,0.137491166,neg,ns,0.899296735,Lhx4,Lhx4_Exon,1,155702500,155702549,155702548,155702549,50,-,AGGATTGTCCTGTCCCGTCCATGGAGAAGCTCCCATTCATTAACTGTCCG,"Exon (Lhx4-201/Lhx4, exon 6 of 6)",1,155698031,155742027,43997,2,Lhx4-201,39478,Lhx4-201;Lhx4-202,Lhx4;Lhx4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,7,16872,ENSMUSG00000026468,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13979,cg26438612,-0.0000278,0.0000103,-2.694957073,0.007423722,loss,ns,0.0000305,0.0000175,1.741799352,0.082535434,pos,ns,0.00345703,0.005127029,0.674275443,0.500638705,pos,ns,0.300475577,-0.000550922,0.000176318,-3.124589567,0.001948929,neg,ns,0.794212739,Robo2,Robo2_Exon,16,74008783,74008832,74008783,74008784,50,-,CGAGCTGTAGACATTACAATGGTGTGGTGAGAACATAAAAAAGAAATTAA,"Exon (Robo2-210/Robo2, exon 7 of 29)",16,73891839,74410989,519151,2,Robo2-203,402157,Robo2-203;Robo2-210;Robo2-202;Robo2-211;Robo2-207,Robo2;Robo2;Robo2;Robo2;Robo2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,11,268902,ENSMUSG00000052516,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12409,cg18834375,0.0000789,0.00000732,10.77807605,3.24E-23,gain,yes,-0.0000217,0.0000124,-1.741185348,0.082643151,neg,ns,0.00737784,0.003643909,2.02470496,0.043754634,pos,ns,1.358975944,-0.000351385,0.000125314,-2.804038828,0.005365042,neg,ns,0.803942176,Fign,Fign_Promoter,2,64099115,64099164,64099163,64099164,50,-,CCAGACGCTTACTATGCAGTGTAAGCTCAGTTGGTTTACTAATCACCCCG,Promoter (1-2kb),2,63977337,64098038,120702,2,Fign-201,-1126,Fign-203;Fign-201;Fign-202;Fign-204,Fign;Fign;Fign;Fign,0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,12,84,60344,ENSMUSG00000075324,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25965,cg02077583,-0.000000454,0.0000049,-0.092753611,0.926159218,loss,ns,-0.0000145,0.00000832,-1.740977974,0.082679557,neg,ns,0.000345054,0.002437844,0.141540785,0.887534678,pos,ns,0.051814669,-0.000118622,0.0000838,-1.414910341,0.158098477,neg,ns,0.809925495,Brsk2,Brsk2_threeUTR,7,142002460,142002509,142002508,142002509,50,-,CCACTCTGATACCAGGAATTATCCCGAAAAGTTAACATGTCACCTCCACG,3' UTR,7,141949751,142004246,54496,1,Brsk2-201,52709,Brsk2-203;Brsk2-201;Brsk2-205;Brsk2-215;Brsk2-204;Brsk2-202;Brsk2-216;Brsk2-206;Brsk2-211;Brsk2-210;Brsk2-214;Brsk2-213;Brsk2-208;Brsk2-207;Brsk2-209;Brsk2-212;Brsk2-217,Brsk2;Brsk2;Brsk2;Brsk2;Brsk2;Brsk2;Brsk2;Brsk2;Brsk2;Brsk2;Brsk2;Brsk2;Brsk2;Brsk2;Brsk2;Brsk2;Brsk2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,TRUE,FALSE,threeUTR,3,4,75770,ENSMUSG00000053046,conserved gene and region,7,142002372,142002563,192,*,192,11,0.583333333,0.678881389,0.057291667,0.00000315,CpGisland,TRUE,U11,Tr-P
11077,cg08766215,0.000121017,0.0000121,9.97357539,1.68E-20,gain,yes,-0.0000359,0.0000206,-1.740890439,0.082694929,neg,ns,0.019694866,0.006039096,3.261227265,0.001232872,pos,ns,2.909082129,-0.000508282,0.000207684,-2.447380265,0.014944538,neg,ns,0.148098759,Nkx2-1,Nkx2-1_Exon,12,56533689,56533738,56533689,56533690,50,+,CGGGGCCATGTTCTTGCTCACGTCCCCCAGCGAGCCCAGGCCGCCCATGC,"Exon (Nkx2-1-202/Nkx2-1, exon 2 of 2)",12,56531958,56535106,3149,2,Nkx2-1-202,1368,Nkx2-1-202;Nkx2-1-201,Nkx2-1;Nkx2-1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,29,21869,ENSMUSG00000001496,mapped to different genes,12,56533137,56533945,809,*,809,82,0.694684796,0.841425672,0.101359703,8.59E-63,CpGisland,TRUE,U13,Hc-P
23019,cg12406333,-0.0000553,0.0000111,-4.964960821,0.00000114,loss,yes,0.0000329,0.0000189,1.740548542,0.082754989,pos,ns,-0.003438898,0.005542713,-0.620435872,0.535426702,neg,ns,0.271299974,0.0000421,0.000190613,0.220651982,0.825508674,pos,ns,0.839307728,Tmco5,Tmco5_Intron,2,116859173,116859222,116859173,116859174,50,+,CGACCTAGACATAGGACATTTCCTGGGCTTTAATGACTGTCTGAGGTTAA,"Intron (Gm13990-201/Gm13990-201, intron 2 of 3)",2,116878691,116892181,13491,1,Tmco5-202,-19469,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,14,67356,ENSMUSG00000027355,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20142,cg05319795,-0.000000977,0.000006,-0.162854637,0.870738997,loss,ns,0.0000177,0.0000102,1.74041385,0.08277866,pos,ns,0.002580315,0.002984424,0.864593999,0.387930191,pos,ns,0.41124642,0.0000236,0.000102634,0.229490896,0.818638737,pos,ns,0.911740822,Calcoco1,Calcoco1_Intergenic_upstream,15,102737359,102737408,102737359,102737360,50,-,CGCACTGTCTGTCCATAAAGAATGTCTCGGAATTGGTGTAATTCAGAGAA,Distal Intergenic,15,102706777,102722178,15402,2,Calcoco1-201,-15230,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,20,29,67488,ENSMUSG00000023055,conserved gene but different region,15,102737359,102737627,269,*,269,21,0.565055762,0.991922739,0.078066915,4.85E-14,CpGisland,TRUE,U11,Tr-P
21431,cg15221192,0.00000087,0.00000151,0.576842844,0.564464258,gain,ns,-0.00000446,0.00000256,-1.740321824,0.082794836,neg,ns,0.000349321,0.000750299,0.465575481,0.641846311,pos,ns,0.192568951,-0.0000104,0.0000258,-0.401122384,0.688606366,neg,ns,0.973850638,Zswim6,Zswim6_Exon,13,107744115,107744164,107744163,107744164,50,+,CCGATGTGGCCTGTTCGATGAATCTGTTTTTTCCACAATTCAGAAAGCCG,"Exon (Zswim6-204/Zswim6, exon 6 of 13)",13,107724617,107890064,165448,2,Zswim6-204,145900,Zswim6-204;Zswim6-201;Zswim6-203,Zswim6;Zswim6;Zswim6,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,26,67263,ENSMUSG00000032846,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20720,cg15408728,-0.000033,0.00000889,-3.707544139,0.000247863,loss,ns,0.0000263,0.0000151,1.740279825,0.082802219,pos,ns,-0.002382716,0.004426614,-0.538270626,0.590776487,neg,ns,0.228576798,0.000151878,0.000152231,0.997683037,0.319211194,pos,ns,0.801304466,Dicer1,Dicer1_Intergenic_downstream,12,104634980,104635029,104634980,104634981,50,-,CGGTGCTAAGATGTTCTGAATTAGATTTGAATTACAACCGCTAAATGCCC,Distal Intergenic,12,104697346,104700502,3157,2,Dicer1-205,65522,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,12,192119,ENSMUSG00000041415,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22288,cg24325948,-0.0000305,0.00000721,-4.225214972,0.0000314,loss,ns,0.0000213,0.0000122,1.740188111,0.082818344,pos,ns,0.025144692,0.003588519,7.006983501,1.52E-11,pos,yes,10.81731766,-0.000254729,0.000123409,-2.064106786,0.039839359,neg,ns,0.096340956,Srgap3,Srgap3_fiveUTR,6,112946456,112946505,112946504,112946505,50,+,ATGATCTCTTTGTCTTTCTTGAACTTAGTTTGAGATGACATCTTCTGACG,Promoter (<=1kb),6,112717971,112947266,229296,2,Srgap3-202,761,Srgap3-202;Srgap3-203;Srgap3-201,Srgap3;Srgap3;Srgap3,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,3,259302,ENSMUSG00000030257,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22213,cg06946968,0.0000139,0.00000337,4.115987948,0.0000495,gain,ns,-0.00000995,0.00000572,-1.740185186,0.082818859,neg,ns,0.004219968,0.001675445,2.518714775,0.012281433,pos,ns,1.910750953,-0.000235672,0.0000576,-4.090228587,0.000055,neg,ns,0.074640242,Gm26897,Gm26897_Intergenic_downstream,5,111894301,111894350,111894301,111894302,50,+,CGTTGCTCTGGAGTGAGCTTAATGAATCTGTTAGTGACGGCTGCCTGCCC,Distal Intergenic,5,111733924,111734574,651,1,Gm26897-201,160377,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,11,23,,NA,mapped to different genes,5,111894183,111894444,262,*,262,16,0.599236641,0.68496732,0.061068702,3.24E-09,CpGisland,TRUE,NA,NRS
6060,cg22973588,0.0000628,0.00000655,9.59164332,3.00E-19,gain,yes,-0.0000194,0.0000111,-1.740173194,0.082820967,neg,ns,0.003292069,0.00326087,1.009567622,0.313489831,pos,ns,0.503776542,-0.000216671,0.000112141,-1.932132083,0.054254193,neg,ns,0.031335706,Psd2,Psd2_Intergenic_upstream,18,35920340,35920389,35920388,35920389,50,+,CGAGCGAGCCGACCCTGAATTTTAAGCGATTGATCAGGAAGCTCAGGCCG,Distal Intergenic,18,35964830,36014712,49883,1,Psd2-201,-44441,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,24,29,74002,ENSMUSG00000024347,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
14355,cg22552660,-0.0000376,0.00000953,-3.938580571,0.000101291,loss,ns,0.0000282,0.0000162,1.740056502,0.082841488,pos,ns,-0.005937623,0.004745535,-1.251202132,0.211804146,neg,ns,0.674065543,0.0000158,0.000163199,0.096955361,0.922824496,pos,ns,0.67519957,Ltbp1,Ltbp1_Exon,17,75348784,75348833,75348784,75348785,50,+,CGGGTTTTGTGACAATACAGCTGGCTCCTTCCGCTGCCTCTGTTATCAGG,"Exon (Ltbp1-210/Ltbp1, exon 26 of 35)",17,75005568,75391328,385761,1,Ltbp1-210,343216,Ltbp1-210;Ltbp1-201;Ltbp1-205;Ltbp1-203;Ltbp1-202,Ltbp1;Ltbp1;Ltbp1;Ltbp1;Ltbp1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,9,268977,ENSMUSG00000001870,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13608,cg26067250,0.0000148,0.00000195,7.568242161,4.36E-13,gain,yes,-0.00000576,0.00000331,-1.739778339,0.08289042,neg,ns,0.00109531,0.000970335,1.128796269,0.259856559,pos,ns,0.585266317,-0.0000454,0.0000334,-1.360174733,0.174762911,neg,ns,0.07831155,Dlx1,Dlx1_fiveUTR,2,71529989,71530038,71530037,71530038,50,+,AAGAGATGACCATGACCACCATGCCAGAAAGTCTCAACAGCCCCGTGTCG,5' UTR,2,71528113,71533980,5868,1,Dlx1-201,1876,Dlx1-201;Dlx1-202;Dlx1-205;Dlx1-204;Dlx1-203;Dlx1-206;Metap1d-201;Metap1d-205,Dlx1;Dlx1;Dlx1;Dlx1;Dlx1;Dlx1;Metap1d;Metap1d,0;0;0;0;0;-742;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,12,36,13390,ENSMUSG00000041911,conserved gene but different region,2,71530032,71530315,284,*,284,23,0.64084507,0.820912404,0.080985916,1.08E-15,CpGisland,TRUE,U3,Pr-B
20230,cg02107842,0.0000159,0.00000814,1.954013715,0.051598545,gain,ns,0.0000241,0.0000138,1.739723127,0.082900135,pos,ns,-0.002982569,0.004052849,-0.735919181,0.462336345,neg,ns,0.335041964,0.000141557,0.000139377,1.015642398,0.310591724,pos,ns,0.817661077,Mast4,Mast4_Intron,13,102957284,102957333,102957332,102957333,50,+,AAATAAAAATTTGCTGACACTTCCTGCATCACAGATGTCTAACTTCTGCG,"Intron (Mast4-205/Mast4, intron 4 of 26)",13,102732486,103334192,601707,2,Mast4-205,376859,Mast4-205;Mast4-220;Mast4-207;Mast4-218;Mast4-201;Mast4-213;Mast4-204;Mast4-202,Mast4;Mast4;Mast4;Mast4;Mast4;Mast4;Mast4;Mast4,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,8,328329,ENSMUSG00000034751,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1591,cg04954408,-0.00000553,0.0000026,-2.126748342,0.034230552,loss,ns,-0.00000768,0.00000442,-1.739490943,0.082941001,neg,ns,-0.00046391,0.00129426,-0.35843693,0.720260326,neg,ns,0.142510507,0.00000201,0.0000445,0.045229028,0.963953878,pos,ns,0.947889378,Zfp521,Zfp521_Intron,18,13809960,13810009,13809960,13809961,50,-,CGAAGTAATGGCAGCTTGAAAATCGTACCATCTACAGGGTCTCCTGAGAC,"Intron (Zfp521-201/Zfp521, intron 5 of 7)",18,13687013,13972787,285775,2,Zfp521-201,162778,Zfp521-201;Zfp521-205;Zfp521-204,Zfp521;Zfp521;Zfp521,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,81,225207,ENSMUSG00000024420,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11419,cg09802644,0.000111101,0.00000703,15.80677497,1.09E-41,gain,yes,-0.0000208,0.0000119,-1.738920782,0.083041423,neg,ns,0.003347075,0.003498249,0.956785814,0.339420923,pos,ns,0.46926139,0.0000863,0.000120305,0.717366129,0.473688399,pos,ns,0.255172281,Ccdc33,Ccdc33_Intron,9,58061188,58061237,58061236,58061237,50,+,CCTGAAGCGGAAACTGACAAATTCTGTTTAACAAAGACATTTGTCCCTCG,"Intron (Ccdc33-201/Ccdc33, intron 10 of 18)",9,58028677,58102297,73621,2,Ccdc33-201,41060,Ccdc33-201;Ccdc33-203;Ccdc33-210;Ccdc33-204;Stra6-210,Ccdc33;Ccdc33;Ccdc33;Ccdc33;Stra6,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,8,382077,ENSMUSG00000037716,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20085,cg18753452,0.00000547,0.00000407,1.343824199,0.179987965,gain,ns,-0.000012,0.00000691,-1.738825745,0.083058171,neg,ns,-0.001567505,0.002024098,-0.774421641,0.439271725,neg,ns,0.35726675,-0.0000605,0.0000696,-0.868646923,0.385712272,neg,ns,0.837999399,Pcbp2,Pcbp2_Exon,15,102486044,102486093,102486092,102486093,50,-,AGAGGGGATGTTCAGTCTCCAAGGCTCACTCAATCCTTCCGCCTCAGCCG,"Exon (Gm27406-201/Gm27406-201, exon 1 of 1)",15,102470539,102488880,18342,1,Pcbp2-220,15505,Pcbp2-220;Pcbp2-201;Pcbp2-205;Pcbp2-212;Pcbp2-231;Pcbp2-214;Pcbp2-216;Pcbp2-203;Pcbp2-208;Pcbp2-217;Pcbp2-202;Pcbp2-218;Pcbp2-206;Pcbp2-227;Pcbp2-219;Pcbp2-213;Pcbp2-221;Pcbp2-223;Pcbp2-207;Pcbp2-224;Pcbp2-228;Pcbp2-211;Pcbp2-226;Pcbp2-230;Pcbp2-210;Pcbp2-204;Pcbp2-215;Pcbp2-222;Pcbp2-229;Pcbp2-225,Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2,0;0;0;0;0;0;0;0;14976;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,Exon,7,8,18521,ENSMUSG00000056851,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8036,cg05012275,-0.00011377,0.0000304,-3.74555639,0.000214571,loss,ns,0.0000897,0.0000516,1.738730378,0.08307498,pos,ns,-0.014112467,0.015117804,-0.933499848,0.351288463,neg,ns,0.454336114,0.001363131,0.0005199,2.621910474,0.009175399,pos,ns,0.497811271,Pax2,Pax2_Intergenic_upstream,19,44699056,44699105,44699056,44699057,50,+,CGCTGCCATTCCCGTCTGATAATCCGGCCTGCCATAAAATTAGACTAGCA,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-56940,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,19,44698991,44699081,91,*,91,9,0.648351648,0.94137931,0.098901099,0.000000407,CpGisland,TRUE,U13,Hc-P
4400,cg09984613,0.000000857,0.00000222,0.385252612,0.70031447,gain,ns,0.00000657,0.00000378,1.738651279,0.083088924,pos,ns,0.001404968,0.001106701,1.269509706,0.205211536,pos,ns,0.687798229,0.0000229,0.0000381,0.600903365,0.548343448,pos,ns,0.941913841,Ak8,Ak8_Intron,2,28798151,28798200,28798151,28798152,50,-,CGGGCAGCATAAATATTAATTCTAATAGCTCTGCACAGTGGTTATTATTT,"Intron (Ak8-201/Ak8, intron 11 of 12)",2,28700164,28813165,113002,1,Ak8-201,97987,Ak8-201;Gm13385-201,Ak8;Gm13385,0;-4582,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,3,68870,ENSMUSG00000026807,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9109,cg03383661,-0.00000343,0.0000019,-1.804349987,0.072146924,loss,ns,0.00000561,0.00000323,1.738038454,0.083197021,pos,ns,0.001790169,0.000945613,1.89313024,0.059271738,pos,ns,1.227152338,0.00000976,0.0000325,0.300225772,0.764206175,pos,ns,0.051092449,Tbcc,Tbcc_Promoter,17,46890325,46890374,46890373,46890374,50,+,GCGAGTTTCTAACCTTGTTCTTATAAACAAACCCACATGTGCAGCTGCCG,Promoter (<=1kb),17,46890684,46891847,1164,1,Tbcc-201,-310,Tbcc-201,Tbcc,-310,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,2,72726,ENSMUSG00000036430,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
4295,cg27311247,-0.00000574,0.00000319,-1.795736824,0.07351012,loss,ns,0.00000943,0.00000543,1.7380232,0.083199713,pos,ns,0.003475589,0.001590081,2.185794408,0.029578515,pos,ns,1.52902364,-0.000113522,0.0000547,-2.076007086,0.038717232,neg,ns,0.934320698,Zfp800,Zfp800_Exon,6,28243531,28243580,28243579,28243580,50,+,GCCAGCTGAAAGTTTTGGTTTTCTGGTTTTTTGCTGGCCACCTGCAGCCG,"Exon (Zfp800-202/Zfp800, exon 5 of 6)",6,28239927,28261911,21985,2,Zfp800-202,18331,Zfp800-202;Zfp800-201;Zfp800-203;Zfp800-204;Zfp800-205,Zfp800;Zfp800;Zfp800;Zfp800;Zfp800,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,10,627049,ENSMUSG00000039841,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2532,cg16682215,-0.0000116,0.0000025,-4.643003185,0.00000508,loss,ns,0.00000738,0.00000425,1.73795578,0.083211613,pos,ns,0.004631473,0.001244485,3.721598406,0.000235024,pos,ns,3.628887735,-0.000117803,0.0000428,-2.752544653,0.006261864,neg,ns,0.942838481,Bclaf1,Bclaf1_threeUTR,10,20332525,20332574,20332573,20332574,50,-,CTTCAATGCAGTGCATTTCTAGAAACAGTTTGTGTAAGAACTTTGGTTCG,3' UTR,10,20312469,20342501,30033,1,Bclaf1-202,20056,Bclaf1-202;Bclaf1-204;Bclaf1-201;Bclaf1-208;Bclaf1-203;Bclaf1-210;Bclaf1-207;Bclaf1-209;Bclaf1-206,Bclaf1;Bclaf1;Bclaf1;Bclaf1;Bclaf1;Bclaf1;Bclaf1;Bclaf1;Bclaf1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,TRUE,FALSE,threeUTR,3,7,72567,ENSMUSG00000037608,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12255,cg09776887,0.00000481,0.00000196,2.448351918,0.014905074,gain,ns,0.0000058,0.00000334,1.737947547,0.083213066,pos,ns,0.002443391,0.000977495,2.499646218,0.01294842,pos,ns,1.887783218,-0.0000436,0.0000336,-1.297394061,0.195460286,neg,ns,0.068444432,Ptch1,Ptch1_fiveUTR,13,63573429,63573478,63573477,63573478,50,+,GCCTGTTTCTATTAAGCAGTTCCATGGCCCTCGGCGTGGGTGGTCTGCCG,Promoter (<=1kb),13,63508329,63573460,65132,2,Ptch1-204,0,Ptch1-204;Ptch1-205,Ptch1;Ptch1,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,9,36,19206,ENSMUSG00000021466,conserved gene and region,13,63573460,63573518,59,*,59,7,0.694915254,1.012254902,0.118644068,0.00000415,CpGisland,TRUE,U3,Pr-B
21681,cg00855137,0.000327998,0.0000167,19.65736638,1.99E-56,gain,yes,-0.0000493,0.0000283,-1.737909222,0.083219831,neg,ns,-0.009085291,0.008304662,-1.093998868,0.274804801,neg,ns,0.560975684,0.001624197,0.000285597,5.687031614,2.99E-08,pos,yes,0.253893678,Rpl35a-ps4,Rpl35a-ps4_Intergenic_downstream,2,108827636,108827685,108827684,108827685,50,-,GGAGACAAATACCGCGGATGTGAAAGGTGTCGCTGGGATTACCAATGACG,Distal Intergenic,2,108874926,108875258,333,2,Rpl35a-ps4-201,47622,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,100043423,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7717,cg04500524,-0.0000369,0.0000103,-3.571902091,0.000410706,loss,ns,0.0000305,0.0000175,1.737706904,0.083255551,pos,ns,0.002900084,0.005135874,0.56467209,0.572705181,pos,ns,0.242068888,0.000049,0.000176622,0.277148543,0.781850766,pos,ns,0.49707773,Thy1,Thy1_Intron,9,43961607,43961656,43961655,43961656,50,-,CATTAGGGCCTTAAGAACCTCTATTATAAACATGTAAATGGAACTCAACG,"Intron (Gm30373-201/Gm30373-201, intron 1 of 2)",9,44043384,44048579,5196,1,Thy1-201,-81777,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,21838,ENSMUSG00000032011,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4799,cg14992370,0.000125252,0.0000192,6.521327077,2.83E-10,gain,yes,-0.0000567,0.0000326,-1.737423123,0.083305675,neg,ns,0.030020514,0.009559284,3.140456306,0.001849486,pos,ns,2.732948998,-0.001200125,0.000328743,-3.650647219,0.000306909,neg,ns,0.651456332,Mynn,Mynn_Exon,3,30603686,30603735,30603686,30603687,50,+,CGATCTACAGAAGCACTTCTGAGAACAATGTCTTTCTTGATCAGAGTCAG,"Exon (Mynn-202/Mynn, exon 2 of 8)",3,30602065,30619873,17809,1,Mynn-202,1621,Actrt3-201;Mynn-202;Mynn-205;Mynn-201;Mynn-204;Mynn-206,Actrt3;Mynn;Mynn;Mynn;Mynn;Mynn,-3747;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,2,80732,ENSMUSG00000037730,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U4,Pr-F
21437,cg03444965,0.000000783,0.00000228,0.34331721,0.731592546,gain,ns,-0.00000673,0.00000388,-1.737346837,0.083319154,neg,ns,0.000555052,0.001135665,0.488746172,0.625366987,pos,ns,0.203865049,0.0000322,0.0000391,0.823655445,0.410768568,pos,ns,0.925157816,Rbm5,Rbm5_Exon,9,107757179,107757228,107757179,107757180,50,+,CGGAGTAAAGGTAAACGGAGTCAGGGAGTGCTGAGAAAGCTGTCAAACAC,"Exon (Rbm5-219/Rbm5, exon 5 of 23)",9,107740371,107770996,30626,2,Rbm5-214,13768,Rbm5-214;Rbm5-219;Rbm5-224;Rbm5-210;Rbm5-201;Rbm5-211;Rbm5-217;Rbm5-212;Rbm5-221;Rbm5-220;Rbm5-223;Rbm5-208;Rbm5-203;Rbm5-204;Rbm5-218,Rbm5;Rbm5;Rbm5;Rbm5;Rbm5;Rbm5;Rbm5;Rbm5;Rbm5;Rbm5;Rbm5;Rbm5;Rbm5;Rbm5;Rbm5,0;0;0;0;0;0;-3089;-2577;0;0;0;0;0;13731;13717,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,11,83486,ENSMUSG00000032580,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10367,cg26797651,0.0000077,0.00000229,3.36208109,0.000870502,gain,ns,-0.00000676,0.00000389,-1.737175905,0.083349361,neg,ns,0.000522026,0.001139793,0.458001191,0.647272454,pos,ns,0.188912875,-0.000117476,0.0000392,-2.997031123,0.002946521,neg,ns,0.045504828,Npas3,Npas3_Promoter,12,53246530,53246579,53246578,53246579,50,+,GCAACACGTGGGGGACGAAGCAGTTTCATATCTCCTGGTATTATCTGCCG,Promoter (1-2kb),12,53248157,54069532,821376,1,Npas3-204,-1578,Npas3-204;Npas3-201,Npas3;Npas3,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,103,27386,ENSMUSG00000021010,conserved gene and region,12,53246436,53246640,205,*,205,13,0.517073171,0.950089127,0.063414634,0.000000089,CpGisland,TRUE,U13,Hc-P
4419,cg12760766,-0.0000027,0.00000384,-0.704301512,0.481773762,loss,ns,0.0000113,0.00000652,1.73686814,0.083403772,pos,ns,0.003946834,0.001910953,2.065375172,0.039718452,pos,ns,1.401007682,-0.000134301,0.0000657,-2.043615022,0.041836611,neg,ns,0.925816404,Unc5d,Unc5d_Intron,8,28852862,28852911,28852862,28852863,50,-,CGGCTCATTCAATGTTCTGGCAGTTAATGCAATGAAATAAAAATAATTTA,"Intron (Unc5d-201/Unc5d, intron 3 of 17)",8,28646717,29219636,572920,2,Unc5d-201,366725,Unc5d-201;Unc5d-204;Unc5d-202;Unc5d-203;Unc5d-205,Unc5d;Unc5d;Unc5d;Unc5d;Unc5d,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,11,210801,ENSMUSG00000063626,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16878,cg17114556,0.00000333,0.00000522,0.637461235,0.524294974,gain,ns,-0.0000154,0.00000886,-1.736771856,0.0834208,neg,ns,0.001209228,0.002596611,0.465694865,0.641760938,pos,ns,0.19262672,0.000067,0.0000893,0.750088186,0.453770491,pos,ns,0.720577586,Irf2bpl,Irf2bpl_threeUTR,12,86880821,86880870,86880869,86880870,50,-,TACTGTTCAAAAGCATCCGTGCATCAATAAAGCAAAAACAAAACAACACG,3' UTR,12,86880701,86884798,4098,2,Irf2bpl-201,3928,Irf2bpl-201,Irf2bpl,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,6,238330,ENSMUSG00000034168,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19902,cg20538492,-0.00000419,0.0000024,-1.747052347,0.081618549,loss,ns,0.00000707,0.00000407,1.736750166,0.083424637,pos,ns,0.002915572,0.001192819,2.444269542,0.015071504,pos,ns,1.821843394,-0.000111746,0.000041,-2.724110217,0.006813245,neg,ns,0.940764291,Nkx6-1,Nkx6-1_Intergenic_downstream,5,101603413,101603462,101603461,101603462,50,-,GTGAGGCAGATTATTAATGCGCTCCAGTAGCTGTTAATTTCAGTTTGCCG,Distal Intergenic,5,101658139,101664996,6858,2,Nkx6-1-201,61583,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,10,18096,ENSMUSG00000035187,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15827,cg21120854,0.0000143,0.00000381,3.75166703,0.00020963,gain,ns,-0.0000112,0.00000647,-1.736583498,0.083454121,neg,ns,-0.00278884,0.001895199,-1.471528722,0.142162578,neg,ns,0.847214709,-0.0000798,0.0000652,-1.224957266,0.221521271,neg,ns,0.876625983,Tmc3,Tmc3_Exon,7,83603419,83603468,83603419,83603420,50,-,CGGTCCCAGAAGCTGGAGCAGTCGAAGAAGGAGCTGACACTTTGGGAAAA,"Exon (Tmc3-202/Tmc3, exon 10 of 19)",7,83584927,83618107,33181,1,Tmc3-202,18492,Tmc3-202;Tmc3-201;Tmc3-203;Tmc3-205,Tmc3;Tmc3;Tmc3;Tmc3,0;0;0;5892,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,233424,ENSMUSG00000038540,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4170,cg18276556,-0.00000167,0.00000417,-0.400450638,0.689100461,loss,ns,0.0000123,0.00000709,1.73646751,0.083474644,pos,ns,0.00307681,0.002076234,1.481918684,0.139377702,pos,ns,0.8558067,-0.000082,0.0000714,-1.14801846,0.251846073,neg,ns,0.906686146,Lama2,Lama2_Intron,10,27146028,27146077,27146028,27146029,50,+,CGAGGCTTTGCCTATAAAAGTGTCAGGATAAATTTGTGTCTAATATTAAC,"Intron (Lama2-201/Lama2, intron 32 of 64)",10,26981285,27616843,635559,2,Lama2-201,470766,Lama2-201,Lama2,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,16773,ENSMUSG00000019899,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25593,cg23960883,0.000031,0.0000103,3.019683433,0.002740726,gain,ns,0.0000302,0.0000174,1.736189707,0.083523817,pos,ns,-0.003387197,0.005103382,-0.663716152,0.507365294,neg,ns,0.294679244,0.0000888,0.000175505,0.506062854,0.613172207,pos,ns,0.740653413,Ebf3,Ebf3_Intron,7,137295722,137295771,137295770,137295771,50,-,AAATTTCTGTCATATTTCATTATCACTCTTAGGGTAGGCTGAAGGCAGCG,"Intron (Ebf3-204/Ebf3, intron 6 of 15)",7,137193673,137314445,120773,2,Ebf3-204,18674,Ebf3-204;Ebf3-201;Ebf3-202;Ebf3-203;Ebf3-208;Ebf3-206,Ebf3;Ebf3;Ebf3;Ebf3;Ebf3;Ebf3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,62,84,13593,ENSMUSG00000010476,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8445,cg25856018,0.0000266,0.00000646,4.113261154,0.00005,gain,ns,-0.0000191,0.000011,-1.736078429,0.08354352,neg,ns,0.009022085,0.003215375,2.805920238,0.005334602,pos,ns,2.272898012,-0.000223434,0.000110576,-2.020628905,0.044177698,neg,ns,0.12123355,Tlx1,Tlx1_fiveUTR,19,45151457,45151506,45151505,45151506,50,-,AGAGTAACCGCAGATACACAAAGGACAGGTTCACAGGTGAGTCCGGCCCG,Promoter (<=1kb),19,45151469,45156399,4931,1,Tlx1-202,0,Tlx1-201;Tlx1-202,Tlx1;Tlx1,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,7,21908,ENSMUSG00000025215,conserved gene but different region,19,45150790,45151532,743,*,743,80,0.728129206,0.812687996,0.107671602,1.42E-63,CpGisland,TRUE,U13,Hc-P
53,cg24094229,-0.0000364,0.00000418,-8.706800604,1.89E-16,loss,yes,-0.0000123,0.0000071,-1.736005188,0.083556491,neg,ns,0.004269058,0.002079184,2.053236767,0.040888453,pos,ns,1.388399321,-0.000332059,0.0000715,-4.643986679,0.00000506,neg,ns,0.866182664,Morc2a,Morc2a_Exon,11,3668788,3668837,3668788,3668789,50,-,CGAGGAGGATTTATGCTTTGCTTTTTGGATGATGGAGCAGGAATGGATCC,"Exon (Morc2a-202/Morc2a, exon 4 of 26)",11,3649191,3690477,41287,1,Morc2a-202,19597,Morc2a-202;Morc2a-201;Morc2a-206,Morc2a;Morc2a;Morc2a,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,74522,ENSMUSG00000034543,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14653,cg07023974,0.00000569,0.00000384,1.481915893,0.139378444,gain,ns,0.0000113,0.00000653,1.735869847,0.083580463,pos,ns,0.007319837,0.001911891,3.828585431,0.000155941,pos,ns,3.807039025,-0.000195646,0.0000657,-2.975619796,0.003153975,neg,ns,0.9212943,Rbfox2,Rbfox2_Intron,15,77095035,77095084,77095035,77095036,50,+,CGATAAGATTTGGCTGATCACACAAGCATGCAAAGTATTATTATTCAGCA,"Intron (1700109K24Rik-201/1700109K24Rik-201, intron 2 of 2)",15,77078990,77306928,227939,2,Rbfox2-204,211844,Rbfox2-204;Rbfox2-203;Rbfox2-202;Rbfox2-206;Rbfox2-208;Rbfox2-209;Rbfox2-201;Rbfox2-207;Rbfox2-212;Rbfox2-213,Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,20,93686,ENSMUSG00000033565,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18036,cg03443886,0.000000676,0.00000315,0.214799006,0.830065262,gain,ns,0.00000928,0.00000535,1.735766065,0.08359885,pos,ns,0.005297753,0.00156612,3.382724343,0.0008098,pos,ns,3.09162233,-0.000223158,0.0000539,-4.143398256,0.0000442,neg,ns,0.927953754,Pola1,Pola1_Intron,X,93377747,93377796,93377747,93377748,50,-,CGCAGCTGTTGACCCATAATAAGCGCTGGGTCAATATAGCTGCTTGTCAA,"Intron (Pola1-201/Pola1, intron 35 of 36)",20,93304767,93632155,327389,2,Pola1-201,254359,Pola1-201,Pola1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,59,62,18968,ENSMUSG00000006678,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18903,cg05196915,-0.00000123,0.00000196,-0.629959885,0.529184874,loss,ns,0.00000578,0.00000333,1.735589061,0.083630215,pos,ns,0.002089906,0.000975327,2.142775258,0.032909545,pos,ns,1.482678128,-0.0000806,0.0000335,-2.401535072,0.016914896,neg,ns,0.950157782,Dach1,Dach1_Intron,14,97868403,97868452,97868403,97868404,50,+,CGCTTTTGAAAACATTACTGTGCGCAGGCATAAAATTAGCGGCAGGACCT,"Intron (Dach1-201/Dach1, intron 6 of 10)",14,97786853,98169543,382691,2,Dach1-201,301091,Dach1-201;Dach1-202;Dach1-203,Dach1;Dach1;Dach1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,76,13134,ENSMUSG00000055639,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4289,cg14924417,-0.0000037,0.00000701,-0.527245737,0.598400064,loss,ns,0.0000207,0.0000119,1.735003228,0.083734096,pos,ns,-0.002438435,0.003488516,-0.698989226,0.485082849,neg,ns,0.31418408,0.000114448,0.00011997,0.953972245,0.340840959,pos,ns,0.765379703,Olfm1,Olfm1_Exon,2,28208113,28208162,28208161,28208162,50,+,GTACAGCTCTGCCCAGGACAGCGAGGGCAGGTGTATCTGCACAGTGGTCG,"Exon (Olfm1-205/Olfm1, exon 2 of 4)",2,28192992,28214425,21434,1,Olfm1-205,15121,Olfm1-205;Olfm1-204;Olfm1-202;Olfm1-203;Olfm1-201,Olfm1;Olfm1;Olfm1;Olfm1;Olfm1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,56177,ENSMUSG00000026833,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
2676,cg04522213,-0.00000222,0.0000014,-1.590321317,0.112781644,loss,ns,0.00000411,0.00000237,1.7349358,0.083746059,pos,ns,0.00213617,0.000694681,3.075035038,0.00229214,pos,ns,2.639758943,-0.0000579,0.0000239,-2.423543338,0.015942095,neg,ns,0.956412904,Vps54,Vps54_Exon,11,21277768,21277817,21277816,21277817,50,-,GAGTTGCAGGACTACCTCAGGAAAACTTCCCAGGCTGTAAAAATGCTTCG,"Exon (Vps54-202/Vps54, exon 7 of 23)",11,21239281,21321122,81842,1,Vps54-202,38487,Gm12039-201;Vps54-202;Vps54-201;Vps54-203;Vps54-204,Gm12039;Vps54;Vps54;Vps54;Vps54,2407;0;0;0;-86,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,245944,ENSMUSG00000020128,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8948,cg03450918,0.0000281,0.00000322,8.729147552,1.62E-16,gain,yes,0.0000095,0.00000547,1.734927875,0.083747465,pos,ns,0.006831079,0.001603662,4.259674776,0.0000272,pos,ns,4.565719927,-0.000208375,0.0000551,-3.778342278,0.000189291,neg,ns,0.049270089,Bmp4,Bmp4_Exon,14,46386009,46386058,46386057,46386058,50,+,TCAAACTAGCATGGCTCGCGCCTCCTAGCAGGACTTGGCATAATAAAACG,"Exon (Bmp4-201/Bmp4, exon 3 of 4)",14,46383520,46390669,7150,2,Bmp4-201,4611,Bmp4-201;Bmp4-202;Bmp4-204;Bmp4-203;Gm15217-202;Gm15217-201;Gm15217-203,Bmp4;Bmp4;Bmp4;Bmp4;Gm15217;Gm15217;Gm15217,0;0;0;4477;6595;6542;4882,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,8,12159,ENSMUSG00000021835,conserved gene and region,14,46385825,46386072,248,*,248,22,0.580645161,1.05982906,0.088709677,6.67E-16,CpGisland,TRUE,U3,Pr-B
1558,cg02228056,0.0000201,0.0000067,3.005224214,0.002870505,gain,ns,-0.0000197,0.0000114,-1.734927094,0.083747604,neg,ns,0.001673212,0.003334976,0.501716306,0.616223221,pos,ns,0.21026194,-0.000138516,0.00011469,-1.207748335,0.228064682,neg,ns,0.891050086,Zfp521,Zfp521_Intron,18,13704420,13704469,13704468,13704469,50,-,GAGGGCTGATTATAAAGCTGCCCTCCTGTTGCCTGCCTCGGAACAGAACG,"Intron (Zfp521-201/Zfp521, intron 7 of 7)",18,13687013,13972787,285775,2,Zfp521-201,268318,Zfp521-201;Zfp521-205;Zfp521-204,Zfp521;Zfp521;Zfp521,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,81,225207,ENSMUSG00000024420,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14156,cg04724146,0.000023,0.00000267,8.623269431,3.42E-16,gain,yes,-0.00000786,0.00000453,-1.734748551,0.083779288,neg,ns,0.002964325,0.001326691,2.234374164,0.026171041,pos,ns,1.582178998,-0.000055,0.0000456,-1.205632885,0.2288785,neg,ns,0.066682797,Hoxd3,Hoxd3_Promoter,2,74711745,74711794,74711745,74711746,50,+,CGAGCTGTATGTGCAAAATCCGCAAGGAATTGCAGTAAATTCCTTTTTGT,Promoter (<=1kb),2,74711927,74748271,36345,1,Hoxd3-203,-133,Hoxd3-203;Hoxd4-203;Hoxd8-203;Hoxd8-201;Hoxd8-202,Hoxd3;Hoxd4;Hoxd8;Hoxd8;Hoxd8,0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,7,24,15434,ENSMUSG00000079277,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17218,cg25909521,0.00000611,0.00000185,3.299823989,0.001080213,gain,ns,0.00000546,0.00000315,1.734733181,0.083782017,pos,ns,0.004121877,0.000921951,4.470822116,0.0000109,pos,ns,4.960842215,-0.0000717,0.0000317,-2.26220893,0.024376578,neg,ns,0.948702621,Nrxn3,Nrxn3_Exon,12,89254650,89254699,89254698,89254699,50,-,GCACTTTTGTTTGGCTTTTGACAGGTTGTTTATAAGAATAATGACATCCG,"Exon (Nrxn3-209/Nrxn3, exon 7 of 8)",12,88722876,89261571,538696,1,Nrxn3-209,531774,Nrxn3-209;Nrxn3-213;Nrxn3-208;Nrxn3-205;Nrxn3-201;Nrxn3-210,Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,39,18191,ENSMUSG00000066392,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U14,Hc-H
25195,cg09825191,-0.0000866,0.0000191,-4.542651706,0.00000797,loss,ns,0.0000562,0.0000324,1.734520091,0.083819846,pos,ns,0.070980665,0.00949021,7.479356628,7.74E-13,pos,yes,12.11126197,-0.002354614,0.000326368,-7.21460879,4.18E-12,neg,yes,0.480660858,Arid1a,Arid1a_threeUTR,4,133680325,133680374,133680325,133680326,50,-,CGGCTGTCATGACTGGCCAATCAAAAACAGTACATCACAAATGACTTGTG,3' UTR,4,133679008,133753611,74604,2,Arid1a-202,73237,Arid1a-202;Arid1a-205;Arid1a-201,Arid1a;Arid1a;Arid1a,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,31,93760,ENSMUSG00000007880,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24345,cg21513836,0.0000195,0.00000976,1.997281242,0.046668419,gain,ns,-0.0000287,0.0000166,-1.734466049,0.083829442,neg,ns,0.000807153,0.004855604,0.166231297,0.868083296,pos,ns,0.061438601,-0.0000164,0.000166984,-0.097983092,0.922009042,neg,ns,0.270746534,Fgf14,Fgf14_Promoter,14,124677543,124677592,124677591,124677592,50,+,GCATTGAAAAGACTGGCTTTCCATGACGTAGCCACGTGCTTTCAGACCCG,Promoter (<=1kb),14,123977907,124677127,699221,2,Fgf14-202,-416,Fgf14-202,Fgf14,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,9,14169,ENSMUSG00000025551,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25049,cg18020892,0.0000427,0.00000612,6.980872114,1.79E-11,gain,yes,-0.000018,0.0000104,-1.734188786,0.083878689,neg,ns,0.008887718,0.003044087,2.919666554,0.003760822,pos,ns,2.424717175,0.000100042,0.000104686,0.955642155,0.339997679,pos,ns,0.768301109,Slc41a1,Slc41a1_Exon,1,131841216,131841265,131841216,131841217,50,-,CGACCTCATCACCTTGGCGCTGCTCTCAGGCATCAGCTGGGGACTCTACC,"Exon (Slc41a1-201/Slc41a1, exon 6 of 11)",1,131827977,131848865,20889,1,Slc41a1-201,13239,Slc41a1-201;Slc41a1-203,Slc41a1;Slc41a1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,98396,ENSMUSG00000013275,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5400,cg18385287,-0.00000865,0.0000027,-3.199167538,0.001520861,loss,ns,0.00000796,0.00000459,1.734102534,0.083894013,pos,ns,0.00200759,0.001345192,1.492419094,0.136606287,pos,ns,0.864529312,-0.000109253,0.0000463,-2.361664755,0.018811176,neg,ns,0.930638227,Mvb12b,Mvb12b_Intron,2,33788946,33788995,33788946,33788947,50,-,CGCCTGATAAGGCTGAAAAGAAGAGATTAATATATGCAAATTACATCCAG,"Intron (Mvb12b-201/Mvb12b, intron 7 of 9)",2,33729953,33887946,157994,2,Mvb12b-201,98951,Mvb12b-201;Mvb12b-205;Mvb12b-204,Mvb12b;Mvb12b;Mvb12b,0;-187;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,28,47,72543,ENSMUSG00000038740,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10043,cg19629874,-0.00000106,0.00000149,-0.71312815,0.476302932,loss,ns,0.00000438,0.00000252,1.734037431,0.083905582,pos,ns,0.000638224,0.000739628,0.862899313,0.3888599,pos,ns,0.41020684,0.0000117,0.0000254,0.460243512,0.645664097,pos,ns,0.045910013,Maml3,Maml3_Exon,3,52103824,52103873,52103824,52103825,50,-,CGGCGCTCCAGCTCCAGCTGCTCCACCTGAGCCTGCTGGTACCTGTTCTC,"Exon (Maml3-202/Maml3, exon 1 of 5)",3,51685907,52105076,419170,2,Maml3-202,1203,Maml3-202,Maml3,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,32,433586,ENSMUSG00000061143,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
16832,cg15252495,-0.0000112,0.00000427,-2.620765791,0.009205578,loss,ns,-0.0000126,0.00000725,-1.733938838,0.083923104,neg,ns,-0.000759937,0.002123254,-0.357911382,0.720653206,neg,ns,0.142273677,-0.000155055,0.000073,-2.12350758,0.034503134,neg,ns,0.894591132,Cltc,Cltc_Intron,11,86700822,86700871,86700870,86700871,50,+,GTGAACCAACTACTGATTAGCCTCCTGCCCTTCCTAAAGCCTATTAGCCG,"Intron (Cltc-202/Cltc, intron 30 of 31)",11,86694351,86757565,63215,2,Cltc-202,56694,Cltc-202;Cltc-201;Cltc-203;Cltc-205,Cltc;Cltc;Cltc;Cltc,0;0;0;1559,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,10,67300,ENSMUSG00000047126,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12212,cg06277783,-0.00000286,0.00000116,-2.470798179,0.014018733,loss,ns,0.00000341,0.00000197,1.733596401,0.083983985,pos,ns,0.000538516,0.000577068,0.933194588,0.351445771,pos,ns,0.454141679,-0.0000267,0.0000198,-1.346605314,0.179091079,neg,ns,0.971942,Iqch,Iqch_Exon,9,63482633,63482682,63482633,63482634,50,-,CGTGCTGTGCTAAAATGCCCGCCAGCTCCTCAGAGATCTTCACCAAAGCT,"Exon (Iqch-201/Iqch, exon 16 of 22)",9,63421455,63602493,181039,2,Iqch-201,119811,Iqch-201;Iqch-203;Iqch-204;Iqch-202;Iqch-206,Iqch;Iqch;Iqch;Iqch;Iqch,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,22,78250,ENSMUSG00000037801,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9114,cg08362119,0.000000361,0.00000201,0.18016356,0.85714188,gain,ns,0.0000059,0.00000341,1.733319259,0.084033284,pos,ns,0.003324316,0.000998056,3.330790981,0.000970641,pos,ns,3.012941451,-0.000107498,0.0000343,-3.131947336,0.001902217,neg,ns,0.94714052,Gm4791,Gm4791_Intergenic_upstream,9,46900020,46900069,46900068,46900069,50,+,AACAGTAAACTATAATTTAAACAAGAATCGAGACCTAATTTAAATCATCG,Distal Intergenic,9,46998741,47003860,5120,1,Gm4791-201,-98672,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,9,18,215467,ENSMUSG00000094893,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18221,cg22756051,0.0000147,0.00000518,2.842310589,0.004775824,gain,ns,-0.0000152,0.00000879,-1.733081338,0.084075626,neg,ns,-0.00630323,0.002576251,-2.44666727,0.014973556,neg,ns,1.82467506,0.000116053,0.0000886,1.309901177,0.191199119,pos,ns,0.859263004,Dipk2a,Dipk2a_Exon,9,94520427,94520476,94520427,94520428,50,-,CGGCCATCTTTGGCAATTTCACTTGGTGGATCATGAAGGAGTCCTCCAGA,"Exon (Dipk2a-201/Dipk2a, exon 3 of 3)",9,94517864,94538081,20218,2,Dipk2a-201,17605,Dipk2a-201,Dipk2a,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,68861,ENSMUSG00000045414,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12064,cg06414428,-0.00000113,0.00000309,-0.366875002,0.713962556,loss,ns,0.00000909,0.00000524,1.732807111,0.084124449,pos,ns,0.002701066,0.001536323,1.758136907,0.079711035,pos,ns,1.098481553,-0.000110376,0.0000528,-2.089099407,0.037513989,neg,ns,0.937592886,Ifih1,Ifih1_Intron,2,62630360,62630409,62630408,62630409,50,+,TGATCTATGCAAAATATATCCACAATATATTCCAAAGCATAATGTCACCG,"Intron (Ifih1-201/Ifih1, intron 3 of 15)",2,62595798,62646211,50414,2,Ifih1-201,15802,Ifih1-201;Ifih1-202;Ifih1-205;Ifih1-204;Ifih1-203,Ifih1;Ifih1;Ifih1;Ifih1;Ifih1,0;0;0;0;15749,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,71586,ENSMUSG00000026896,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27733,cg03639474,-0.0000109,0.00000463,-2.351496817,0.019323717,loss,ns,-0.0000136,0.00000786,-1.73271753,0.084140403,neg,ns,-0.000562202,0.002303302,-0.244085464,0.807326093,neg,ns,0.092951011,-0.000044,0.0000792,-0.556032489,0.578589743,neg,ns,0.906859126,Cdc42bpa,Cdc42bpa_Exon,1,180114071,180114120,180114071,180114072,50,-,CGAACAGCTGATAAAGGACACTGAAGAGCTTAGATCTGAAAAGGGTATGG,"Exon (Cdc42bpa-203/Cdc42bpa, exon 20 of 35)",1,179960472,180163156,202685,1,Cdc42bpa-203,153599,Cdc42bpa-203;Cdc42bpa-204;Cdc42bpa-208;Cdc42bpa-201;Cdc42bpa-202;Cdc42bpa-218;Cdc42bpa-207;Cdc42bpa-216;Cdc42bpa-217;Cdc42bpa-212;Cdc42bpa-209;Cdc42bpa-214;Cdc42bpa-211,Cdc42bpa;Cdc42bpa;Cdc42bpa;Cdc42bpa;Cdc42bpa;Cdc42bpa;Cdc42bpa;Cdc42bpa;Cdc42bpa;Cdc42bpa;Cdc42bpa;Cdc42bpa;Cdc42bpa,0;0;0;0;0;0;0;0;5079;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,10,226751,ENSMUSG00000026490,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10088,cg12345677,0.000260434,0.0000218,11.95334507,2.44E-27,gain,yes,-0.0000641,0.000037,-1.732527837,0.084174195,neg,ns,0.037330614,0.010843867,3.442555578,0.000655423,pos,ns,3.183478212,-0.00088247,0.00037292,-2.366380008,0.018577574,neg,ns,0.171556662,Gm28308,Gm28308_Intron,6,52165192,52165241,52165192,52165193,50,-,CGCGCATTGTTTGGGACTGTCGGGAAGACGCCTCGCACCTCACAAATCAT,"Intron (Gm28308-201/Gm28308, intron 3 of 3)",6,52163359,52213339,49981,2,Gm28308-201,48098,Gm28308-201;Hoxa2-201;Hoxa3-201,Gm28308;Hoxa2;Hoxa3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,46,103,,NA,mapped to different genes,6,52165135,52165261,127,*,127,10,0.637795276,0.819354839,0.078740158,0.000000615,CpGisland,TRUE,NA,NRS
17939,cg01314094,0.000250905,0.0000205,12.26147825,1.90E-28,gain,yes,-0.0000602,0.0000348,-1.732523946,0.084174888,neg,ns,0.022742207,0.010184562,2.233007944,0.026261999,pos,ns,1.580672216,-0.001202227,0.000350246,-3.432518963,0.000679236,neg,ns,0.293420921,Runx1,Runx1_fiveUTR,16,92695719,92695768,92695719,92695720,50,+,CGGCGGCTCGTGCTGGCATCTACGGGGATACGCATCACAACAAGCCGATT,5' UTR,16,92601466,92826149,224684,2,Runx1-201,130381,Runx1-201;Runx1-202;Runx1-203;Runx1-205;Runx1-206;Runx1-204,Runx1;Runx1;Runx1;Runx1;Runx1;Runx1,0;0;0;-224;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,7,10,12394,ENSMUSG00000022952,mapped to different genes,16,92695398,92695878,481,*,481,36,0.636174636,0.74,0.074844075,5.11E-23,CpGisland,TRUE,U3,Pr-B
16018,cg12132605,-0.00000186,0.00000275,-0.676594248,0.499167944,loss,ns,0.00000808,0.00000467,1.7322843,0.084217595,pos,ns,0.003995437,0.001367117,2.922526941,0.003727381,pos,ns,2.428596227,-0.000120471,0.000047,-2.562383795,0.01086789,neg,ns,0.940325094,Zfp407,Zfp407_Intron,18,84215188,84215237,84215188,84215189,50,+,CGTTGTGAATGAAAAATGTCATTACAGACTAAAAAATTTTGCAGTAAACA,"Intron (Zfp407-201/Zfp407, intron 2 of 2)",18,84128027,84558425,430399,2,Zfp407-201,343188,Zfp407-201;Zfp407-202,Zfp407;Zfp407,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,32,240476,ENSMUSG00000048410,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1478,cg22735901,0.0000342,0.00000943,3.625993558,0.000336403,gain,ns,0.0000278,0.000016,1.732166018,0.08423868,pos,ns,0.018087132,0.004694891,3.852513447,0.000142089,pos,ns,3.847438978,-0.000316056,0.000161457,-1.957523132,0.051182969,neg,ns,0.730648491,Ncoa2,Ncoa2_Exon,1,13148355,13148404,13148355,13148356,50,-,CGGAGGTCACTGAGGTCATGCTGATCTGTCCTGTCATCTGGTTCATGCTG,"Exon (Ncoa2-203/Ncoa2, exon 20 of 22)",1,13139105,13372439,233335,2,Ncoa2-203,224035,Ncoa2-203;Ncoa2-202;Ncoa2-201;Ncoa2-211;Ncoa2-209;Ncoa2-205,Ncoa2;Ncoa2;Ncoa2;Ncoa2;Ncoa2;Ncoa2,0;0;0;-1725;0;2614,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,6,17978,ENSMUSG00000005886,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9685,cg16940143,-0.0000558,0.0000126,-4.423982083,0.0000134,loss,ns,0.0000371,0.0000214,1.731905622,0.084285114,pos,ns,-0.003823219,0.006279416,-0.608849512,0.543070087,neg,ns,0.265144118,-0.000299823,0.000215949,-1.38840088,0.166011848,neg,ns,0.721465866,Gm48130,Gm48130_Intergenic_downstream,10,49953001,49953050,49953001,49953002,50,-,CGTGAAAGACTAAAAGCTTTTAATTAGACTTTTACTCAATAGGGGAGAAA,Distal Intergenic,10,49955660,49955981,322,2,Gm48130-201,2980,Gm48130-201,Gm48130,2931,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20426,cg18473521.1,0.0000418,0.0000032,13.03750116,2.82E-31,gain,yes,-0.00000943,0.00000544,-1.73186323,0.084292675,neg,ns,0.005267579,0.00159445,3.303696233,0.001065909,pos,ns,2.972279918,-0.0000718,0.0000548,-1.308681505,0.191611613,neg,ns,0.069576922,Hoxc4,Hoxc4_threeUTR,15,103035270,103035319,103035270,103035271,50,+,CGACTCTGGGTTAGCACAATTGAACTGGATTTACGAGCGAGAATGGGTAA,3' UTR,15,103018934,103036405,17472,1,Hoxc4-202,16336,Hoxc4-202;Hoxc4-201,Hoxc4;Hoxc4,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,17,91,15423,ENSMUSG00000075394,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
19158,cg16219777,-0.00000477,0.0000016,-2.983373046,0.003077356,loss,ns,0.0000047,0.00000271,1.731802343,0.084303537,pos,ns,-0.000355012,0.00079513,-0.446482652,0.655560367,neg,ns,0.18338731,0.0000564,0.0000273,2.061953042,0.04004538,pos,ns,0.972186777,Mrps22,Mrps22_Intergenic_upstream,9,98708004,98708053,98708052,98708053,50,+,ATGTCACCCGTTTGCGGTTTCTCTGGGACTTTATTAAAATGTTTGTGACG,Distal Intergenic,9,98588730,98601660,12931,2,Mrps22-201,-106344,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,6,64655,ENSMUSG00000032459,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4669,cg17524357,0.000015,0.00000305,4.906793593,0.0000015,gain,yes,-0.00000898,0.00000519,-1.731699047,0.084321965,neg,ns,-0.002413879,0.001519968,-1.588111905,0.113280411,neg,ns,0.945845184,-0.00000489,0.0000523,-0.093466861,0.925593054,neg,ns,0.886114793,Cacna1d,Cacna1d_threeUTR,14,30082499,30082548,30082499,30082500,50,+,CGGAAAAAGGTGATGGAGATTCTATTGCTCTCTTCAGAGTTCTGAAGGGT,Promoter (<=1kb),14,30039939,30082758,42820,2,Cacna1d-212,210,Cacna1d-212;Cacna1d-202;Cacna1d-201;Cacna1d-208;Cacna1d-209;Cacna1d-214;Cacna1d-204;Cacna1d-207;Cacna1d-218;Cacna1d-216;Cacna1d-217;Cacna1d-210;Cacna1d-219,Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,13,26,12289,ENSMUSG00000015968,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3872,cg21260068,-0.000051,0.00000995,-5.130850429,0.00000051,loss,yes,0.0000293,0.0000169,1.731675266,0.084326208,pos,ns,0.001379901,0.004950385,0.278746225,0.780625437,pos,ns,0.107557301,-0.000191965,0.000170243,-1.127591534,0.260364447,neg,ns,0.821991217,5730522E02Rik,5730522E02Rik_Intron,11,25675025,25675074,25675073,25675074,50,+,GCCGAGGGACAAATCAACACTAGTTATTTTTCTACCGGCTATTAGACTCG,"Intron (5730522E02Rik-202/5730522E02Rik, intron 2 of 5)",11,25617668,26210569,592902,2,5730522E02Rik-202,535495,5730522E02Rik-202;5730522E02Rik-201;5730522E02Rik-208,5730522E02Rik;5730522E02Rik;5730522E02Rik,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,90,70626,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
39,cg24357559,-0.0000213,0.00000281,-7.600101993,3.54E-13,loss,yes,-0.00000825,0.00000477,-1.731622646,0.084335598,neg,ns,-0.002837439,0.00139621,-2.032244347,0.04298116,neg,ns,1.366721869,-0.0000461,0.000048,-0.9595751,0.338016913,neg,ns,0.944861615,Smtn,Smtn_Exon,11,3520787,3520836,3520835,3520836,50,+,TTTTACCAGCCCCTTCTGGACCAGACAGCGGTAGAATTCCTGGATGTACG,"Exon (Smtn-201/Smtn, exon 8 of 9)",11,3517523,3527937,10415,2,Smtn-201,7101,Selenom-202;Selenom-203;Selenom-201;Smtn-201;Smtn-204;Smtn-203;Smtn-208;Smtn-202;Smtn-210;Smtn-206,Selenom;Selenom;Selenom;Smtn;Smtn;Smtn;Smtn;Smtn;Smtn;Smtn,6103;6085;5920;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,6,29856,ENSMUSG00000020439,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16567,cg11060954,0.0000272,0.00000436,6.23785924,1.45E-09,gain,yes,-0.0000128,0.0000074,-1.731398809,0.084375549,neg,ns,-0.000712573,0.002167829,-0.328703292,0.742601902,neg,ns,0.129243943,0.0000505,0.0000746,0.677520094,0.498581347,pos,ns,0.081326198,Rpl31-ps16,Rpl31-ps16_Intergenic_upstream,17,85485655,85485704,85485655,85485656,50,-,CGGGGAAATTGAAGCAGACAGCCTTTGTCTAAACACTTCTTTTGCCCAGA,Distal Intergenic,17,85498633,85499008,376,1,Rpl31-ps16-201,-12978,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,13,668850,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
16805,cg17269939,0.0000327,0.00000658,4.977460396,0.00000107,gain,yes,0.0000193,0.0000112,1.731281856,0.084396429,pos,ns,-0.002013168,0.003273042,-0.615075352,0.538956193,neg,ns,0.268446533,0.000142414,0.00011256,1.265231477,0.206738555,pos,ns,0.741666259,Esrrb,Esrrb_Intergenic_downstream,12,86553246,86553295,86553294,86553295,50,+,CAGAACGGGGAACTTACTGAACGCCTGAAACTCAGCTACTTATCCACTCG,Distal Intergenic,12,86504409,86509967,5559,1,Esrrb-205,48837,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,19,26380,ENSMUSG00000021255,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8296,cg15664051,-0.00000557,0.00000774,-0.720326216,0.471866949,loss,ns,0.0000227,0.0000131,1.731145173,0.084420837,pos,ns,0.013548417,0.003849816,3.519237507,0.000497631,pos,ns,3.303092623,-0.000484479,0.000132395,-3.659349636,0.000297092,neg,ns,0.850013476,Zeb2,Zeb2_threeUTR,2,44983856,44983905,44983856,44983857,50,-,CGAAGGTAACAAAGATTTAAACAGCCAACATCACAAATGTCTCAAGTTCT,3' UTR,2,44983632,45117395,133764,2,Zeb2-212,133490,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,10,158,24136,ENSMUSG00000026872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21394,cg24209716,0.0000127,0.0000021,6.02797597,4.71E-09,gain,yes,-0.00000618,0.00000357,-1.73094872,0.084455928,neg,ns,-0.000578506,0.001045802,-0.553169113,0.580546312,neg,ns,0.236163129,-0.0000202,0.000036,-0.561156151,0.575096493,neg,ns,0.95375198,Helz,Helz_Exon,11,107604254,107604303,107604302,107604303,50,+,AGCATTTAACACAGAAATATTTGGAACTTTTCGCCAAACCATAGTTTTCG,"Exon (Helz-202/Helz, exon 12 of 30)",11,107547956,107672287,124332,1,Helz-202,56298,Helz-202;Helz-201;Helz-203,Helz;Helz;Helz,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,8,78455,ENSMUSG00000020721,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20749,cg23057669,0.0000429,0.0000191,2.254054928,0.024890814,gain,ns,-0.000056,0.0000324,-1.730870003,0.084469992,neg,ns,0.014870834,0.009483335,1.568101723,0.117877541,pos,ns,0.928568934,-0.000607896,0.000326131,-1.863960805,0.063272374,neg,ns,0.519530908,Cpne4,Cpne4_Exon,9,104901473,104901522,104901473,104901474,50,+,CGACTATGTTGAGCTTGCATTCAATGCACGGAAATTGGATGACAAGGTAA,"Exon (Cpne4-201/Cpne4, exon 5 of 16)",9,104569483,105034544,465062,1,Cpne4-201,331990,Cpne4-201;Cpne4-202;Cpne4-205;Cpne4-206,Cpne4;Cpne4;Cpne4;Cpne4,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,74020,ENSMUSG00000032564,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18489,cg23505965,0.000017,0.00000585,2.913826727,0.00382995,gain,ns,-0.0000172,0.00000993,-1.730768148,0.084488193,neg,ns,-0.008214169,0.002909798,-2.822934232,0.005066354,neg,ns,2.295304486,0.0000579,0.000100068,0.579068669,0.562963358,pos,ns,0.764121382,Ube2z,Ube2z_Exon,11,96060976,96061025,96061024,96061025,50,-,TTGGGGTTAAACCTCACTGTGTTATTGCCCGTTGTCATCAGTTTGACCCG,"Exon (Ube2z-201/Ube2z, exon 3 of 7)",11,96047432,96065388,17957,2,Ube2z-201,4363,Ube2z-201,Ube2z,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,6,268470,ENSMUSG00000014349,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
513,cg24859789,0.0000118,0.00000928,1.270927853,0.204707183,gain,ns,0.0000273,0.0000158,1.730662596,0.084507057,pos,ns,-0.005665506,0.00461628,-1.227288236,0.220645459,neg,ns,0.656305006,0.0000731,0.000158753,0.460240662,0.64566614,pos,ns,0.801569082,St18,St18_Intron,1,6729772,6729821,6729820,6729821,50,+,AAATTAATAAGCACCACTTCCATTACATATATTTTAGGTTGTTGTTGCCG,"Intron (St18-208/St18, intron 2 of 23)",1,6487231,6860934,373704,1,St18-208,242541,St18-208;St18-204;St18-201;St18-206;St18-203;St18-210;St18-212,St18;St18;St18;St18;St18;St18;St18,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,20,240690,ENSMUSG00000033740,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22149,cg05060234,-0.00000573,0.00000251,-2.284201027,0.023035506,loss,ns,0.00000738,0.00000426,1.730489095,0.084538074,pos,ns,0.002119686,0.001249341,1.696644095,0.09076776,pos,ns,1.042068382,-0.000105632,0.000043,-2.458578007,0.014495299,neg,ns,0.92458243,Agbl4,Agbl4_Exon,4,111433133,111433182,111433181,111433182,50,+,GCCCTTGCCTGAACTGATTCTCGTTGTCCTACACAGAGACCTGAGGGGCG,"Exon (Bend5-201/Bend5, exon 3 of 6)",4,110397698,111567010,1169313,1,Agbl4-205,1035435,Agbl4-205;Agbl4-206;Agbl4-201;Agbl4-202;Agbl4-209;Bend5-201;Bend5-204;Bend5-203;Bend5-206;Bend5-202,Agbl4;Agbl4;Agbl4;Agbl4;Agbl4;Bend5;Bend5;Bend5;Bend5;Bend5,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,16,78933,ENSMUSG00000061298,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14890,cg25533209,-0.0000823,0.0000173,-4.76961493,0.00000285,loss,ns,0.0000507,0.0000293,1.730481166,0.084539492,pos,ns,0.048342877,0.008586775,5.629922545,4.04E-08,pos,ns,7.393588892,-0.002588346,0.000295298,-8.765186294,1.25E-16,neg,yes,0.474750034,Pax3,Pax3_threeUTR,1,78102851,78102900,78102851,78102852,50,+,CGCAGCTTTTTAGGTCATGCTGGGACAATTCACAGTCAGGGGCAAGATCA,3' UTR,1,78101267,78196838,95572,2,Pax3-201,93938,Pax3-201;Pax3-202,Pax3;Pax3,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,17,18505,ENSMUSG00000004872,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14565,cg14222211,0.000374764,0.0000391,9.585414974,3.15E-19,gain,yes,-0.00011491,0.0000664,-1.730019908,0.084621996,neg,ns,0.012529493,0.019459156,0.643886786,0.520124932,pos,ns,0.283892328,-0.003515233,0.000669199,-5.252898816,0.000000279,neg,yes,0.265903886,Tsc22d1,Tsc22d1_Intron,14,76505875,76505924,76505923,76505924,50,-,CTGTTGCTAGGCAAACTCTGAACCTTTAATTCGGAGCTATAAATAACTCG,"Intron (Tsc22d1-204/Tsc22d1, intron 4 of 4)",14,76414961,76507762,92802,1,Tsc22d1-204,90914,Tsc22d1-204;Tsc22d1-202;Tsc22d1-207;Tsc22d1-208;Tsc22d1-203;Tsc22d1-214;Tsc22d1-201;Tsc22d1-206;Tsc22d1-205,Tsc22d1;Tsc22d1;Tsc22d1;Tsc22d1;Tsc22d1;Tsc22d1;Tsc22d1;Tsc22d1;Tsc22d1,0;0;0;0;0;0;0;1345;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,Intron,6,10,21807,ENSMUSG00000022010,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
769,cg10352201,-0.00000737,0.00000967,-0.7627009,0.446221755,loss,ns,0.0000284,0.0000164,1.729952064,0.084634137,pos,ns,-0.008390503,0.004810734,-1.744121228,0.082129132,neg,ns,1.085502766,0.000256731,0.000165441,1.551800745,0.121730187,pos,ns,0.606133462,Gm13255,Gm13255_Intergenic_downstream,2,8691348,8691397,8691396,8691397,50,+,ATACGGGAAGATGTATCACCAGCCTGAATAATTGTGACAACCATAGACCG,Distal Intergenic,2,8633937,8634483,547,1,Gm13255-201,57411,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,7,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
296,cg00669285,-0.00000752,0.00000276,-2.722389577,0.006847977,loss,ns,-0.00000811,0.00000469,-1.729786956,0.084663689,neg,ns,0.000600893,0.00137398,0.437337162,0.662171361,pos,ns,0.179029607,0.0000142,0.0000473,0.299761828,0.764559727,pos,ns,0.931312322,Glyr1,Glyr1_Exon,16,5036342,5036391,5036390,5036391,50,+,CCTTCTCCCATGTTCTTCTTCACCTTCCCTTCAGACAGGCTAAGTTTGCG,"Exon (Glyr1-202/Glyr1, exon 5 of 16)",16,5013909,5049857,35949,2,Glyr1-202,13466,Glyr1-202;Glyr1-201;Glyr1-205,Glyr1;Glyr1;Glyr1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,74022,ENSMUSG00000022536,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8139,cg15928284,0.0000237,0.00000731,3.247367318,0.001292412,gain,ns,0.0000215,0.0000124,1.729594848,0.084698084,pos,ns,0.010788731,0.003637085,2.966312471,0.003248257,pos,ns,2.488349625,-0.000535361,0.000125079,-4.280183085,0.0000249,neg,ns,0.496763809,Pax2,Pax2_Exon,19,44790721,44790770,44790769,44790770,50,+,AATGACCCAGTGGGATCCTACTCCATCAATGGGATCCTGGGGATTCCTCG,"Exon (Pax2-203/Pax2, exon 5 of 10)",19,44756045,44837851,81807,1,Pax2-203,34676,Pax2-203;Pax2-201;Pax2-202,Pax2;Pax2;Pax2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,16,166,18504,ENSMUSG00000004231,conserved gene and region,19,44790692,44790817,126,*,126,9,0.611111111,0.765182186,0.071428571,0.00000623,CpGisland,TRUE,NA,NRS
18998,cg02791995,0.00000946,0.000004,2.365523675,0.018619808,gain,ns,0.0000117,0.00000679,1.729341937,0.084743382,pos,ns,0.00417007,0.001990454,2.09503413,0.036979183,pos,ns,1.432042692,-0.0000994,0.0000685,-1.452055013,0.14749763,neg,ns,0.917256494,Dach1,Dach1_Intron,14,98156902,98156951,98156950,98156951,50,+,GAAGTTATTATCGGCCCAATTCCCTCTTGGACATGGTTGCTGGGTGACCG,"Intron (Dach1-201/Dach1, intron 1 of 10)",14,97786853,98169543,382691,2,Dach1-201,12592,Dach1-201;Dach1-202;Dach1-203,Dach1;Dach1;Dach1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,76,13134,ENSMUSG00000055639,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5250,cg21254544,0.0000147,0.0000122,1.205217335,0.229038606,gain,ns,0.0000358,0.0000207,1.729315194,0.084748173,pos,ns,0.003111038,0.006073036,0.512270731,0.608826316,pos,ns,0.215506584,0.0001127,0.000208851,0.539620369,0.589846249,pos,ns,0.86740431,Tlx3,Tlx3_Intergenic_downstream,11,33192497,33192546,33192497,33192498,50,-,CGCTTTAATGTGCGTAAGTTAATCAGAGGTATCCTCGGGGGGAAAAGGAA,Distal Intergenic,11,33200752,33203589,2838,2,Tlx3-201,11092,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,20,27140,ENSMUSG00000040610,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
8811,cg15535321,0.000104402,0.0000175,5.954988662,7.04E-09,gain,yes,-0.0000515,0.0000298,-1.729275929,0.084755208,neg,ns,0.017798515,0.008725773,2.039763703,0.042221339,pos,ns,1.374467998,-0.000340154,0.000300079,-1.133550983,0.257858813,neg,ns,0.409530766,Gm13466,Gm13466_Intergenic_downstream,2,45836679,45836728,45836727,45836728,50,+,TTTCATTTATTAAGTTCAGTGTTGCCAACCCAAACAAAGTATAATCAGCG,Distal Intergenic,2,45809472,45810470,999,1,Gm13466-201,27207,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,9,666604,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4381,cg19732321,-0.00000538,0.00000304,-1.769130003,0.077855381,loss,ns,0.00000893,0.00000516,1.729196817,0.084769383,pos,ns,0.003551234,0.001512719,2.347583536,0.01952422,pos,ns,1.709426305,-0.000123287,0.000052,-2.369890361,0.018405325,neg,ns,0.926847455,Tnik,Tnik_threeUTR,3,28666075,28666124,28666123,28666124,50,-,ATTCCTTTTGACAGCCTACATTCATTCCAATCAGATAATGGGCTGGGGCG,3' UTR,3,28263214,28670585,407372,1,Tnik-207,402861,Tnik-207;Tnik-201;Tnik-212;Tnik-203;Tnik-205;Tnik-202;Tnik-206;Tnik-211;Tnik-214;Tnik-215;Tnik-204;Tnik-216,Tnik;Tnik;Tnik;Tnik;Tnik;Tnik;Tnik;Tnik;Tnik;Tnik;Tnik;Tnik,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,TRUE,FALSE,threeUTR,8,15,665113,ENSMUSG00000027692,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6905,cg08459961,-0.00000317,0.00000136,-2.33463137,0.020200928,loss,ns,0.00000399,0.00000231,1.72909783,0.084787123,pos,ns,-0.000205864,0.000675654,-0.304687715,0.760808453,neg,ns,0.118724671,-0.0000183,0.0000232,-0.785947418,0.43249862,neg,ns,0.963609562,Rims2,Rims2_Exon,15,39454426,39454475,39454426,39454427,50,+,CGTCTAAAAGATGGAAGTGTACCTCGAGATTCAGGAGCAATGCTTGGCTT,"Exon (Rims2-202/Rims2, exon 8 of 27)",15,39198332,39681940,483609,1,Rims2-202,256094,Rims2-202;Rims2-205;Rims2-201;Rims2-211;Rims2-206;Rims2-212,Rims2;Rims2;Rims2;Rims2;Rims2;Rims2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,16,19,116838,ENSMUSG00000037386,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17361,cg17441991,-0.00000132,0.00000333,-0.397411701,0.691337383,loss,ns,-0.00000978,0.00000566,-1.728908444,0.084821071,neg,ns,-0.004303269,0.001657784,-2.595796528,0.009886411,neg,ns,2.004961345,0.000205411,0.000057,3.602996836,0.000366299,pos,ns,0.852724549,Agap1,Agap1_Intron,1,89848817,89848866,89848817,89848818,50,+,CGGCAGCAATTACTGTGACCTCCCGCTTGTCAAGGTCCGGGCTGTGCTCT,"Intron (Agap1-201/Agap1, intron 16 of 17)",1,89454806,89897617,442812,1,Agap1-201,394011,Agap1-201;Agap1-204;Agap1-202,Agap1;Agap1;Agap1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,29,347722,ENSMUSG00000055013,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24314,cg25817964,0.00000171,0.00000624,0.273510001,0.78464334,gain,ns,-0.0000183,0.0000106,-1.728615058,0.084873683,neg,ns,-0.003685635,0.003106071,-1.186590746,0.236297652,neg,ns,0.626540594,0.000259709,0.000106818,2.431330815,0.015609909,pos,ns,0.840943191,Pou3f1,Pou3f1_Intron,4,124615798,124615847,124615798,124615799,50,-,CGACGTTGCCTTGGTAAGAGCTAATGGATGGCCGCCATAAATTCACTGCA,"Intron (Gm2164-201/Gm2164-201, intron 1 of 1)",4,124656807,124660655,3849,1,Pou3f1-201,-41009,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,43,85,18991,ENSMUSG00000090125,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19335,cg14529996,0.00000068,0.00000272,0.250188984,0.802606925,gain,ns,0.00000798,0.00000462,1.728516653,0.084891335,pos,ns,0.004759817,0.001353289,3.517220726,0.00050128,pos,ns,3.299919576,-0.000101376,0.0000465,-2.17827765,0.030138626,neg,ns,0.921497052,Top2a,Top2a_Exon,11,99021710,99021759,99021710,99021711,50,-,CGGATCAATTGTGACTCTAATACAAGACATTTTTGGGTCCCTTTGTTTGT,"Exon (Top2a-201/Top2a, exon 4 of 36)",11,98992943,99024189,31247,2,Top2a-201,2430,Top2a-201;Top2a-204;Top2a-202,Top2a;Top2a;Top2a,0;0;2419,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,21973,ENSMUSG00000020914,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
16077,cg09911517,0.0000935,0.000135277,0.691038137,0.490058704,gain,ns,0.00039722,0.000229817,1.728419581,0.084908751,pos,ns,0.087360159,0.067328529,1.297520678,0.1954168,pos,ns,0.709038102,-0.000286259,0.002315423,-0.123631248,0.90168737,neg,ns,0.601035921,Acaca,Acaca_Intron,11,84362034,84362083,84362082,84362083,50,+,TATTTTGTAATGATGTGCTCCTGCCTTCATGAGGTAAACTGGCCGTGGCG,"Intron (Acaca-202/Acaca, intron 45 of 55)",11,84173122,84401651,228530,1,Acaca-202,188912,Acaca-202;Acaca-201,Acaca;Acaca,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,28,28,107476,ENSMUSG00000020532,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20427,cg18473521.2,0.00004,0.00000321,12.45469838,3.80E-29,gain,yes,-0.00000944,0.00000546,-1.728413965,0.084909759,neg,ns,0.004957492,0.001599814,3.098791877,0.002121198,pos,ns,2.673418883,-0.000077,0.000055,-1.400073469,0.162491319,neg,ns,0.07096311,Hoxc4,Hoxc4_threeUTR,15,103035270,103035319,103035270,103035271,50,-,CGACTCTGGGTTAGCACAATTGAACTGGATTTACGAGCGAGAATGGGTAA,3' UTR,15,103018934,103036405,17472,1,Hoxc4-202,16336,Hoxc4-202;Hoxc4-201,Hoxc4;Hoxc4,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,17,91,15423,ENSMUSG00000075394,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
6352,cg17876895,-0.00000425,0.00000224,-1.895640053,0.058937594,loss,ns,-0.00000658,0.00000381,-1.728033902,0.084977978,neg,ns,-0.000621078,0.001114982,-0.55702936,0.577909303,neg,ns,0.238140314,-0.0000201,0.0000383,-0.52345375,0.601032507,neg,ns,0.931459338,Wfs1,Wfs1_Exon,5,36968416,36968465,36968416,36968417,50,+,CGGAAGTTCTCCCAGGCCTTGCTGTCCTGGAACACCTTGAGGGTGCAGAT,"Exon (Wfs1-201/Wfs1, exon 8 of 8)",5,36966104,36989205,23102,2,Wfs1-201,20740,Wfs1-201;Wfs1-202;Wfs1-203,Wfs1;Wfs1;Wfs1,0;0;8491,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,22393,ENSMUSG00000039474,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3301,cg09459140,-0.00000142,0.0000134,-0.106348438,0.915374687,loss,ns,0.0000392,0.0000227,1.727890236,0.085003776,pos,ns,-0.001471318,0.006644938,-0.221419372,0.824911688,neg,ns,0.083592543,-0.000214001,0.000228519,-0.936468124,0.349761175,neg,ns,0.49178826,Gm11889,Gm11889_Intergenic_downstream,4,23514137,23514186,23514137,23514138,50,-,CGCACCAGCGGGAGCAGAGGTCAATGATTTTATATTAATGGGGATCACGA,Distal Intergenic,4,23517362,23518440,1079,2,Gm11889-201,4303,Gm11889-201,Gm11889,4254,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,8,383998,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25539,cg16184345,0.0000153,0.00000406,3.777773525,0.000189705,gain,ns,0.0000119,0.0000069,1.727716494,0.085034984,pos,ns,0.000660347,0.002020167,0.326877263,0.743981315,pos,ns,0.128437971,0.0000658,0.0000695,0.946496149,0.344632764,pos,ns,0.928225968,Ebf3,Ebf3_Intron,7,137203166,137203215,137203166,137203167,50,-,CGAATGGTGTTTGAAAAGCATTTCGATGGAAATTTCTTAGCCACAACCAT,"Intron (Ebf3-204/Ebf3, intron 11 of 15)",7,137193673,137314445,120773,2,Ebf3-204,111230,Ebf3-204;Ebf3-201;Ebf3-202;Ebf3-203;Ebf3-208;Ebf3-205,Ebf3;Ebf3;Ebf3;Ebf3;Ebf3;Ebf3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,62,84,13593,ENSMUSG00000010476,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1857,cg09472026,-0.00000467,0.00000229,-2.042545917,0.041943109,loss,ns,0.00000671,0.00000388,1.727645365,0.085047763,pos,ns,0.002975789,0.001137845,2.615285307,0.009351304,pos,ns,2.02912781,-0.0000641,0.0000391,-1.637875669,0.102462218,neg,ns,0.950321213,Mcm4,Mcm4_Exon,16,15628646,15628695,15628694,15628695,50,-,ATTCCACTGAGACTCAATGGGATTTGCTGCTGCCAGGACAGAGGTGCGCG,"Exon (Mcm4-201/Mcm4, exon 12 of 16)",16,15623897,15637400,13504,2,Mcm4-201,8705,Mcm4-201;Mcm4-202;Mcm4-203,Mcm4;Mcm4;Mcm4,0;0;7563,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,17217,ENSMUSG00000022673,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22131,cg13856996,-0.0000325,0.00000821,-3.954870855,0.0000949,loss,ns,0.0000241,0.000014,1.727553283,0.085064309,pos,ns,-0.003230544,0.004088073,-0.790236412,0.429993793,neg,ns,0.366537814,-0.000239326,0.000140588,-1.70231262,0.089699246,neg,ns,0.859945549,Agbl4,Agbl4_Intron,4,111252107,111252156,111252107,111252108,50,-,CGGGCCTGCTGATGCACTGAGCCACATGGCTAATACATCAGCTAAATGGA,"Intron (Agbl4-205/Agbl4, intron 5 of 8)",4,110397698,111567010,1169313,1,Agbl4-205,854409,Agbl4-205;Agbl4-206;Agbl4-201;Agbl4-202;Agbl4-207;Agbl4-209,Agbl4;Agbl4;Agbl4;Agbl4;Agbl4;Agbl4,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,16,78933,ENSMUSG00000061298,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5459,cg08270200,-0.00000592,0.00000482,-1.228987113,0.220008716,loss,ns,0.0000141,0.00000818,1.727328691,0.085104675,pos,ns,0.002700011,0.002397878,1.126000257,0.261036349,pos,ns,0.583299014,-0.0000684,0.0000825,-0.830054683,0.407146624,neg,ns,0.592629974,Kalrn,Kalrn_Exon,16,34010619,34010668,34010619,34010620,50,-,CGTAGAGTATGCCATGAACATGACTTCCTGTTGTACCAAAAAATGCACCA,"Exon (Kalrn-212/Kalrn, exon 17 of 27)",16,33969073,34095987,126915,2,Kalrn-212,85319,Gm49594-201;Kalrn-212;Kalrn-201;Kalrn-220;Kalrn-209;Kalrn-211;Kalrn-217;Kalrn-210;Kalrn-221,Gm49594;Kalrn;Kalrn;Kalrn;Kalrn;Kalrn;Kalrn;Kalrn;Kalrn,-3162;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,18,22,545156,ENSMUSG00000061751,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21347,cg10319491,0.0000567,0.00000734,7.724383462,1.57E-13,gain,yes,-0.0000215,0.0000125,-1.726983215,0.0851668,neg,ns,0.009198748,0.003655399,2.516482259,0.012357909,pos,ns,1.908054996,-0.000346046,0.000125709,-2.752760376,0.00625784,neg,ns,0.277489279,Cacna2d2,Cacna2d2_Intron,9,107445446,107445495,107445494,107445495,50,-,CCTTGATGAGCCAATCAGATGGCCTCATTGGCCATTCAGAGCAGGCACCG,"Intron (Cacna2d2-201/Cacna2d2, intron 2 of 37)",9,107399612,107529343,129732,1,Cacna2d2-201,45834,Cacna2d2-201;Cacna2d2-205;Cacna2d2-202;Cacna2d2-203;Cacna2d2-204;Cacna2d2-208,Cacna2d2;Cacna2d2;Cacna2d2;Cacna2d2;Cacna2d2;Cacna2d2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,18,56808,ENSMUSG00000010066,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2924,cg08997359,-0.0000119,0.00000362,-3.288880838,0.001121608,loss,ns,0.0000106,0.00000615,1.72693211,0.085175993,pos,ns,-0.001363798,0.00180167,-0.756962927,0.449647002,neg,ns,0.347128298,0.0000367,0.000062,0.592283162,0.554092733,pos,ns,0.921121908,Ehbp1,Ehbp1_Exon,11,22062807,22062856,22062855,22062856,50,+,TAGTAAGTTCATCTCCACCTCCTACAACAAAGCCTTCAGGGATCTCCTCG,"Exon (Ehbp1-201/Ehbp1, exon 16 of 24)",11,22005828,22285838,280011,2,Ehbp1-201,222982,Ehbp1-201;Ehbp1-202;Ehbp1-207,Ehbp1;Ehbp1;Ehbp1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,11,45,216565,ENSMUSG00000042302,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14040,cg06442182,-0.000000893,0.00000338,-0.264101592,0.791877122,loss,ns,0.00000992,0.00000574,1.726738502,0.085210827,pos,ns,0.005324061,0.001682762,3.16388185,0.001711206,pos,ns,2.766697604,-0.000143785,0.0000579,-2.484614519,0.013496702,neg,ns,0.94343722,Slc30a6,Slc30a6_threeUTR,17,74410350,74410399,74410398,74410399,50,+,GGTACTTTTGTGGCTCTTTGTTTCAACCTGTTCACGATGCTTTCTATTCG,3' UTR,17,74395608,74423667,28060,1,Slc30a6-208,14742,Slc30a6-208;Slc30a6-201;Slc30a6-202;Slc30a6-207;Slc30a6-204;Slc30a6-209;Slc30a6-205;Slc30a6-203;Slc30a6-206,Slc30a6;Slc30a6;Slc30a6;Slc30a6;Slc30a6;Slc30a6;Slc30a6;Slc30a6;Slc30a6,0;0;0;14721;0;0;14695;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,1,210148,ENSMUSG00000024069,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23274,cg18743047,0.0000209,0.00000373,5.605825899,4.59E-08,gain,yes,-0.0000109,0.00000633,-1.72663636,0.085229209,neg,ns,-0.001227233,0.001855073,-0.661555111,0.508747798,neg,ns,0.293497457,0.00015364,0.0000638,2.408314643,0.016609793,pos,ns,0.850487217,Eri3,Eri3_Intron,4,117645215,117645264,117645215,117645216,50,-,CGCTAATGGCAAAGCTCCCTGTTACACAGGGGGCCACCCGCCGCACCTAC,"Intron (Eri3-201/Eri3, intron 7 of 8)",4,117550365,117674297,123933,1,Eri3-201,94850,Eri3-201;Eri3-206;Eri3-203,Eri3;Eri3;Eri3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,82,97,140546,ENSMUSG00000033423,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5887,cg10489928,-0.0000107,0.00000537,-1.99564905,0.046846896,loss,ns,-0.0000157,0.00000912,-1.726371608,0.08527687,neg,ns,0.00185055,0.002671245,0.692766838,0.488974528,pos,ns,0.310713764,-0.000385227,0.0000919,-4.19344919,0.0000359,neg,ns,0.834044614,Prrc2a,Prrc2a_Exon,17,35161645,35161694,35161693,35161694,50,-,CTCCATGTGCTCCATGGGTGACGCTGGCTTGTGCCCAGGACTTTACCCCG,"Exon (Prrc2a-201/Prrc2a, exon 5 of 31)",17,35149076,35164897,15822,2,Prrc2a-201,3203,Prrc2a-201;Prrc2a-206;Prrc2a-203,Prrc2a;Prrc2a;Prrc2a,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,13,53761,ENSMUSG00000024393,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4059,cg08143226,-0.00000381,0.00000713,-0.534050899,0.593689072,loss,ns,0.0000209,0.0000121,1.726348891,0.085280961,pos,ns,0.00313337,0.003550135,0.882605888,0.378133133,pos,ns,0.422355267,-0.0000762,0.000122089,-0.624021748,0.533072229,neg,ns,0.861230757,Gm45647,Gm45647_Intergenic_upstream,8,26677649,26677698,26677649,26677650,50,-,CGGGCTTAATTAACCCACTCTCTCATTAGCATGTCCGTGCACTTGTAAGG,Distal Intergenic,8,26780315,26780509,195,1,Gm45647-201,-102666,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,46,62,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11852,cg02099500,-0.0000026,0.00000199,-1.307417194,0.192039898,loss,ns,-0.00000583,0.00000338,-1.726174631,0.085312345,neg,ns,0.000151468,0.000989257,0.15311322,0.878408606,pos,ns,0.056303418,-0.000033,0.000034,-0.970332742,0.332637128,neg,ns,0.938645404,Hmgxb3,Hmgxb3_Exon,18,61167641,61167690,61167641,61167642,50,-,CGGAAACCTGGGATGTCCGGAACCACAGCAGTCAGTGCAGAGAGCTTAGA,"Exon (Hmgxb3-201/Hmgxb3, exon 4 of 21)",18,61131277,61177050,45774,2,Hmgxb3-201,9360,Hmgxb3-201;Hmgxb3-203;Hmgxb3-205;Hmgxb3-207;Hmgxb3-209;Hmgxb3-204;Hmgxb3-208,Hmgxb3;Hmgxb3;Hmgxb3;Hmgxb3;Hmgxb3;Hmgxb3;Hmgxb3,0;0;0;0;-12;-4228;9338,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,3,106894,ENSMUSG00000024622,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21168,cg14277899,0.0000021,0.00000247,0.850064349,0.395945357,gain,ns,-0.00000723,0.00000419,-1.725849507,0.085370924,neg,ns,0.004744302,0.001226919,3.866843591,0.00013436,pos,ns,3.871730952,-0.000156868,0.0000422,-3.71780976,0.000238422,neg,ns,0.943200798,Dhcr24,Dhcr24_Exon,4,106585892,106585941,106585892,106585893,50,-,CGCAAGCTGTACGAGCAGCACCACGTGGTGCAGGACATGCTGGTGCCCAT,"Exon (Dhcr24-201/Dhcr24, exon 7 of 9)",4,106561038,106589113,28076,1,Dhcr24-201,24854,Dhcr24-201;Lexm-203;Lexm-204;Lexm-201,Dhcr24;Lexm;Lexm;Lexm,0;21454;31297;31300,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,74754,ENSMUSG00000034926,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
258,cg05030995,-0.00000848,0.00000599,-1.416538945,0.157621844,loss,ns,0.0000176,0.0000102,1.725700892,0.085397711,pos,ns,0.005526236,0.002979681,1.854639913,0.064597083,pos,ns,1.189787095,-0.000195631,0.000102471,-1.909130908,0.057168308,neg,ns,0.864759853,Cdk14,Cdk14_Intron,5,4891987,4892036,4892035,4892036,50,-,ATCTTTATTCTCCCCCCTTCAAAAGGTTTCACTGCTCCTGATGTTTAACG,"Intron (Cdk14-203/Cdk14, intron 12 of 13)",5,4803391,5266068,462678,2,Cdk14-203,374032,Cdk14-203;Cdk14-201;Cdk14-202;Cdk14-204;Cdk14-214,Cdk14;Cdk14;Cdk14;Cdk14;Cdk14,0;0;0;0;-3075,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,16,18647,ENSMUSG00000028926,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22019,cg26063662,-0.00000475,0.00000345,-1.375616105,0.169933639,loss,ns,0.0000101,0.00000586,1.725658988,0.085405266,pos,ns,0.004983425,0.001716801,2.902738021,0.00396441,pos,ns,2.401821383,-0.000162049,0.000059,-2.74470902,0.006409631,neg,ns,0.929644448,Elavl4,Elavl4_threeUTR,4,110204424,110204473,110204424,110204425,50,+,CGAGTAACTGTTTCTATTACCCAGGGAAGAGCATGAACCCTTGTATTTTT,3' UTR,4,110203722,110287527,83806,2,Elavl4-204,83054,Elavl4-204;Elavl4-201;Elavl4-203;Elavl4-202;Elavl4-205;Elavl4-206;Elavl4-207;Elavl4-211,Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,8,36,15572,ENSMUSG00000028546,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9348,cg20826017,0.000086,0.0000252,3.418670139,0.000713423,gain,ns,-0.0000737,0.0000427,-1.725582132,0.085419123,neg,ns,-0.003910875,0.01251861,-0.312404926,0.754942845,neg,ns,0.122085927,-0.000490024,0.000430514,-1.138231246,0.255902827,neg,ns,0.421180295,Slit2,Slit2_Exon,5,48263632,48263681,48263632,48263633,50,+,CGCTGCCAGCTGCTAATCTGAATGAGGTGGAAAAAGGTTAGTTGCCTTTT,"Exon (Slit2-217/Slit2, exon 31 of 39)",5,47983138,48307733,324596,1,Slit2-208,280494,Slit2-208;Slit2-201;Slit2-202;Slit2-216;Slit2-217;Slit2-203;Slit2-204;Slit2-211;Slit2-205,Slit2;Slit2;Slit2;Slit2;Slit2;Slit2;Slit2;Slit2;Slit2,0;0;0;0;0;0;0;0;7059,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,11,20563,ENSMUSG00000031558,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22668,cg26573499,-0.00000122,0.00000198,-0.618385648,0.536775234,loss,ns,0.0000058,0.00000336,1.725494325,0.085434956,pos,ns,0.002170231,0.000985489,2.20218593,0.028388218,pos,ns,1.546861869,-0.0000627,0.0000339,-1.850142729,0.065244412,neg,ns,0.954145337,BC052040,BC052040_Intron,2,115657761,115657810,115657761,115657762,50,+,CGTTTTTAATTAATAAACAAATTTGCTCAGGAGCTCATCAGTGTCAAGAG,"Intron (BC052040-203/BC052040, intron 5 of 10)",2,115581716,115778768,197053,1,BC052040-203,76045,BC052040-203;BC052040-201,BC052040;BC052040,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,37,49,399568,ENSMUSG00000040282,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3944,cg01085196,-0.00000808,0.00000456,-1.773239407,0.077170847,loss,ns,0.0000134,0.00000775,1.72510473,0.085505237,pos,ns,0.005222169,0.002269223,2.301302761,0.022037598,pos,ns,1.65683574,-0.000155294,0.000078,-1.989975143,0.047471824,neg,ns,0.89997741,5730522E02Rik,5730522E02Rik_Intron,11,25855605,25855654,25855605,25855606,50,+,CGGAAATATCAAGCCGTCTGTTCCAATATTTTGCCATTCCCCATGAGGTA,"Intron (5730522E02Rik-202/5730522E02Rik, intron 2 of 5)",11,25617668,26210569,592902,2,5730522E02Rik-202,354915,5730522E02Rik-202;5730522E02Rik-201;5730522E02Rik-204,5730522E02Rik;5730522E02Rik;5730522E02Rik,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,90,70626,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17158,cg02536733,-0.0000216,0.00000666,-3.240542211,0.001322702,loss,ns,0.0000195,0.0000113,1.725099324,0.085506213,pos,ns,0.007433007,0.003314939,2.242275825,0.025650327,pos,ns,1.590907102,-0.00048348,0.000114,-4.241039652,0.0000294,neg,ns,0.848223827,Slc5a8,Slc5a8_Exon,10,88902434,88902483,88902482,88902483,50,-,CTGGACAGATGTTTTTCAAGTTGGGATCATGGTGGCTGGATTTGCATCCG,"Exon (Slc5a8-201/Slc5a8, exon 5 of 15)",10,88885992,88929515,43524,1,Slc5a8-201,16442,Slc5a8-201,Slc5a8,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,216225,ENSMUSG00000020062,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1207,cg14145156,0.000061,0.00000872,6.992716097,1.66E-11,gain,yes,0.0000256,0.0000148,1.725069873,0.085511528,pos,ns,0.01026369,0.004341637,2.364013793,0.01869448,pos,ns,1.728286611,-0.00014855,0.000149309,-0.994916717,0.32055272,neg,ns,0.655954477,Bcor,Bcor_Intron,X,12062460,12062509,12062460,12062461,50,-,CGCGTGATTTATCCTCGTGCAGGATTTTAATTGCTCTTTGGAGGTTGAGC,"Intron (Bcor-202/Bcor, intron 1 of 14)",20,12036740,12080553,43814,2,Bcor-202,18044,Bcor-202;Bcor-203;Bcor-204;Bcor-206;Bcor-201;Bcor-207;Bcor-205,Bcor;Bcor;Bcor;Bcor;Bcor;Bcor;Bcor,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,56,74,71458,ENSMUSG00000040363,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26328,cg02329674,0.0000979,0.0000162,6.04015806,4.40E-09,gain,yes,-0.0000475,0.0000275,-1.724898838,0.085542398,neg,ns,0.019956805,0.008065408,2.474370165,0.013882082,pos,ns,1.857545399,-0.0003489,0.000277369,-1.257890697,0.209377966,neg,ns,0.395173279,Gm14111,Gm14111_Promoter,2,146764782,146764831,146764830,146764831,50,+,CCATTTACTTTTCAAATGAATACCAGATAAGTTAGTGCATTTTCTAATCG,Promoter (9-10kb),2,146754707,146755705,999,2,Gm14111-201,-9077,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,17,668918,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15319,cg05871467,-0.00000131,0.00000178,-0.733432975,0.463848673,loss,ns,0.00000522,0.00000302,1.724630792,0.085590797,pos,ns,0.001533849,0.000885957,1.731290865,0.08439482,pos,ns,1.073684208,-0.0000414,0.0000305,-1.358277004,0.175363457,neg,ns,0.95442035,Cul3,Cul3_Exon,1,80322938,80322987,80322986,80322987,50,-,TATGCATTTCTATAGAGCTCCTCAAAACTAAGACCACTGTTATTCTTACG,"Exon (Cul3-201/Cul3, exon 2 of 16)",1,80264923,80340480,75558,2,Cul3-201,17493,Cul3-201;Cul3-202;Cul3-206;Cul3-203,Cul3;Cul3;Cul3;Cul3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,7,26554,ENSMUSG00000004364,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24597,cg15426047,0.0000384,0.0000074,5.186803973,0.000000387,gain,yes,0.0000217,0.0000126,1.724518987,0.085610991,pos,ns,0.006420471,0.003682766,1.743382836,0.082258165,pos,ns,1.084820981,-0.0000596,0.00012665,-0.470478281,0.63834419,neg,ns,0.706023325,Agap2,Agap2_Exon,10,127090131,127090180,127090131,127090132,50,+,CGGGAAACCAGCCAAGCGCAAAATGTGGAAACTAAAATCCTTTGGTAGTT,"Exon (Agap2-203/Agap2, exon 14 of 19)",10,127075284,127093169,17886,1,Agap2-203,14847,Agap2-203;Agap2-201;Agap2-202,Agap2;Agap2;Agap2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,216439,ENSMUSG00000025422,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
277,cg18278595,-0.00000658,0.0000157,-0.418823184,0.675635392,loss,ns,0.000046,0.0000267,1.72449473,0.085615373,pos,ns,-0.001632442,0.007817152,-0.208828202,0.834719504,neg,ns,0.078459439,0.000330245,0.000268831,1.228446537,0.220211181,pos,ns,0.360784165,Npas4,Npas4_threeUTR,19,4985001,4985050,4985049,4985050,50,+,GGTGGAGAGCGGCTCCACGTCTTGATGACAATATGCCATACTTGACGACG,3' UTR,19,4984355,4989971,5617,2,Npas4-202,4921,Npas4-202;Npas4-201;Npas4-203,Npas4;Npas4;Npas4,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,14,16,225872,ENSMUSG00000045903,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
23989,cg02805666,-0.00000346,0.0000012,-2.879199349,0.004264222,loss,ns,0.00000352,0.00000204,1.724421925,0.085628525,pos,ns,0.001432804,0.000598593,2.393620299,0.017277332,pos,ns,1.762523312,-0.0000451,0.0000206,-2.190262181,0.029249879,neg,ns,0.047237663,BC048403,BC048403_fiveUTR,10,121740163,121740212,121740163,121740164,50,+,CGGCCGAGAAGGTCTATCACAGCCTCACCTACCTGGGGCAGAAACTAGGT,Promoter (<=1kb),10,121739937,121752865,12929,1,BC048403-201,226,BC048403-201;BC048403-202,BC048403;BC048403,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,5,270802,ENSMUSG00000053684,conserved gene but different region,10,121739820,121740164,345,*,345,42,0.713043478,0.957826547,0.12173913,3.95E-36,CpGisland,TRUE,U1,Pr-A
24619,cg14405266,-0.00000581,0.00000126,-4.62229871,0.00000558,loss,ns,0.00000368,0.00000213,1.724371168,0.085637696,pos,ns,-0.000198418,0.000625184,-0.317374726,0.751172934,neg,ns,0.124260069,0.0000105,0.0000215,0.48856419,0.625495699,pos,ns,0.044438355,Zfp771,Zfp771_fiveUTR,7,127244949,127244998,127244949,127244950,50,+,CGGGTCCTGAGCTTCTGATCCAGCTCCCCGCCTCAGGACACCAAGATGCC,Promoter (<=1kb),7,127244274,127254803,10530,1,Zfp771-201,675,Zfp771-201;Zfp771-202;Zfp771-203,Zfp771;Zfp771;Zfp771,0;-103;-189,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,1,244216,ENSMUSG00000054716,conserved gene but different region,7,127244470,127245003,534,*,534,43,0.715355805,0.63640143,0.080524345,9.79E-29,CpGisland,TRUE,U1,Pr-A
17007,cg09521804,-0.00000405,0.00000345,-1.175003084,0.240895204,loss,ns,0.0000101,0.00000586,1.724215149,0.085665889,pos,ns,0.004397782,0.001715701,2.563256774,0.010841178,pos,ns,1.964923541,-0.0000985,0.000059,-1.669899474,0.095948635,neg,ns,0.928208983,Cnbp,Cnbp_Exon,6,87844086,87844135,87844086,87844087,50,-,CGCCACAGCGGTAACAGTTGACTTCACTTGTCTTGCTGCAGTTGATGGCT,"Exon (Cnbp-201/Cnbp, exon 5 of 5)",6,87842615,87851106,8492,2,Cnbp-201,6971,Cnbp-201;Cnbp-208;Cnbp-209;Cnbp-203;Cnbp-202;Cnbp-205;Cnbp-207;Cnbp-204;Cnbp-206,Cnbp;Cnbp;Cnbp;Cnbp;Cnbp;Cnbp;Cnbp;Cnbp;Cnbp,0;0;0;0;0;0;0;0;2182,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,12785,ENSMUSG00000030057,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15941,cg04415471,0.00000662,0.00000928,0.71353306,0.476052789,gain,ns,0.0000272,0.0000158,1.724141021,0.085679287,pos,ns,0.01234725,0.004618848,2.673231735,0.007910255,pos,ns,2.101809508,-0.000524093,0.000158842,-3.299465529,0.001081546,neg,ns,0.830239399,Dmd,Dmd_Exon,X,83928914,83928963,83928962,83928963,50,+,CAGCTCAGCAAGCGCTGGCGGGAAATTGAGAGCAAATTTGCTCAGTTTCG,"Exon (Dmd-203/Dmd, exon 41 of 79)",20,82948903,85206141,2257239,1,Dmd-203,980011,Dmd-203;Dmd-215;Dmd-209,Dmd;Dmd;Dmd,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,20,28,13405,ENSMUSG00000045103,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8699,cg05173279,0.000142119,0.0000152,9.344196613,1.89E-18,gain,yes,-0.0000445,0.0000258,-1.723645018,0.08576898,neg,ns,0.018036051,0.007569854,2.382615497,0.017792636,pos,ns,1.749759701,-0.000793657,0.000260327,-3.048698595,0.002496404,neg,ns,0.117621964,Gm31907,Gm31907_fiveUTR,18,45559478,45559527,45559478,45559479,50,+,CGCAGGGTGCACCACCGCTTGGTCTCCCTGCAGCTTTAACAGCCCTGACA,Promoter (<=1kb),18,45501590,45560130,58541,2,Gm31907-202,603,Gm31907-202;Kcnn2-205;Kcnn2-201;Kcnn2-207;Kcnn2-206;Kcnn2-202;Kcnn2-208;Kcnn2-203,Gm31907;Kcnn2;Kcnn2;Kcnn2;Kcnn2;Kcnn2;Kcnn2;Kcnn2,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,15,15,102634286,NA,mapped to different genes,18,45559377,45559494,118,*,118,12,0.677966102,0.932192232,0.101694915,1.49E-09,CpGisland,TRUE,U3,Pr-B
22651,cg11007685,-0.00000643,0.00000514,-1.252124705,0.211468288,loss,ns,0.000015,0.00000873,1.723595687,0.085777905,pos,ns,0.006367944,0.002557157,2.490243517,0.013289015,pos,ns,1.876507209,-0.000233889,0.0000879,-2.659633468,0.008229204,neg,ns,0.918205043,BC052040,BC052040_Intron,2,115601480,115601529,115601528,115601529,50,-,CAGAACATTTTGGAAATGGCCAATATGCAGTTTTCATCAGTATGAAGGCG,"Intron (BC052040-203/BC052040, intron 1 of 10)",2,115581716,115778768,197053,1,BC052040-203,19764,BC052040-203;BC052040-201;BC052040-202,BC052040;BC052040;BC052040,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,37,49,399568,ENSMUSG00000040282,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6965,cg06540369,-0.0000117,0.00000561,-2.079309482,0.038410661,loss,ns,0.0000164,0.00000952,1.723221308,0.08584566,pos,ns,-0.000423416,0.002789862,-0.151769563,0.879467411,neg,ns,0.055780249,-0.0000572,0.0000959,-0.595725398,0.551793365,neg,ns,0.892967188,Lsamp,Lsamp_Intron,16,40234509,40234558,40234557,40234558,50,-,AAATGTCCCATTTTCACAGGCAGTTGAACCGAACTGCAGCTTGTGCTCCG,"Intron (Lsamp-207/Lsamp, intron 1 of 2)",16,39984361,40979709,995349,1,Lsamp-207,250148,Lsamp-207;Lsamp-206;Lsamp-208;Lsamp-210;Lsamp-209,Lsamp;Lsamp;Lsamp;Lsamp;Lsamp,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,23,268890,ENSMUSG00000061080,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4401,cg09894955,-0.00000889,0.0000041,-2.169004838,0.030842189,loss,ns,0.000012,0.00000696,1.723076279,0.085871919,pos,ns,0.005254731,0.002039536,2.576434224,0.010445028,pos,ns,1.981090393,-0.000114219,0.0000701,-1.628459014,0.104443395,neg,ns,0.905492024,Lrrc4,Lrrc4_Intron,6,28812896,28812945,28812944,28812945,50,+,CTCACAAAGGGCCCTGTAGCATCTCTAACTGAGGAGCTGGTGAGCGGACG,"Intron (Snd1-203/Snd1, intron 15 of 16)",6,28661831,28830345,168515,2,Lrrc4-202,17400,Lrrc4-202;Snd1-203;Snd1-201;Snd1-206;Snd1-210;Snd1-209,Lrrc4;Snd1;Snd1;Snd1;Snd1;Snd1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,6,192198,ENSMUSG00000049939,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16175,cg15832538,-0.0000144,0.00000695,-2.07804412,0.038527882,loss,ns,0.0000203,0.0000118,1.722724843,0.085935578,pos,ns,0.012159393,0.003459094,3.515195991,0.000504969,pos,ns,3.296735489,-0.000266376,0.000118958,-2.239240979,0.025849246,neg,ns,0.870214101,Vsx2,Vsx2_Intergenic_upstream,12,84551928,84551977,84551928,84551929,50,+,CGAATTTAATCAACTTGATTTAATAGAAAACAGCAAATGGAATTTATGAT,Distal Intergenic,12,84569762,84595457,25696,1,Vsx2-201,-17785,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,20,12677,ENSMUSG00000021239,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8975,cg21199258,0.000063,0.00000532,11.83946839,6.22E-27,gain,yes,-0.0000156,0.00000905,-1.722371341,0.085999649,neg,ns,0.007394433,0.002650228,2.790111846,0.005595325,pos,ns,2.252174658,-0.000147947,0.0000911,-1.623273986,0.105547259,neg,ns,0.105236689,4931429L15Rik,4931429L15Rik_Intergenic_upstream,9,46443593,46443642,46443641,46443642,50,-,AACATCAAGTCACCCATCAGACGGAGGGTTTGATTTCGGGGATCAAAGCG,Distal Intergenic,9,46303361,46319986,16626,2,4931429L15Rik-201,-123656,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,12,22,74361,ENSMUSG00000056617,mapped to different genes,9,46443582,46443903,322,*,322,30,0.611801242,1.003115265,0.093167702,3.62E-22,CpGisland,TRUE,U13,Hc-P
13273,cg14808528,-0.00000878,0.00000674,-1.302336266,0.193768194,loss,ns,0.0000197,0.0000115,1.722076439,0.086053129,pos,ns,0.004029956,0.003356342,1.20069908,0.230784609,pos,ns,0.636793158,-0.000125957,0.000115424,-1.091252895,0.276009039,neg,ns,0.623702025,Ank3,Ank3_Exon,10,69988605,69988654,69988605,69988606,50,+,CGTATAATAGAAGTCCACATCGAAAAAGGTAACCAAGCTGAGCCCACTGA,"Exon (Ank3-233/Ank3, exon 37 of 43)",10,69398996,70023957,624962,1,Ank3-247,589609,Ank3-247;Ank3-231;Ank3-210;Ank3-239;Ank3-240;Ank3-220;Ank3-201;Ank3-202;Ank3-203;Ank3-204;Ank3-206;Ank3-233;Ank3-221;Ank3-232;Ank3-228;Ank3-205;Ank3-215;Ank3-237;Ank3-242;Ank3-208;Ank3-227;Ank3-207;Ank3-230;Ank3-219;Ank3-244;Ank3-238;Ank3-213;Ank3-224;Ank3-236;Ank3-225;Ank3-243,Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,13,11735,ENSMUSG00000069601,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U14,Hc-H
6956,cg24032550,-0.00000106,0.0000028,-0.377828161,0.705816817,loss,ns,0.00000819,0.00000475,1.721983646,0.086069962,pos,ns,0.002670439,0.001392648,1.917526688,0.056089799,pos,ns,1.251116113,-0.000101604,0.0000479,-2.121470893,0.034675393,neg,ns,0.944266745,Ofcc1,Ofcc1_Intron,13,40067939,40067988,40067939,40067940,50,+,CGATAATATTAAATTCATAGGCTCATTATTTAATTGCAAGGGCAGATTAT,"Intron (Ofcc1-201/Ofcc1, intron 16 of 18)",13,40001882,40288011,286130,2,Ofcc1-201,220023,Ofcc1-201;Ofcc1-203,Ofcc1;Ofcc1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,8,218165,ENSMUSG00000047094,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21881,cg20848626,0.000114751,0.0000111,10.36525933,8.24E-22,gain,yes,-0.0000324,0.0000188,-1.72189342,0.086086333,neg,ns,0.012326903,0.005510018,2.237180035,0.025985094,pos,ns,1.585275704,-0.000194858,0.000189489,-1.028332407,0.304595173,neg,ns,0.278489345,Trim66,Trim66_fiveUTR,7,109493738,109493787,109493738,109493739,50,-,CGTAGGAAGAATGATGCAATCTGGGTATCAAAATAGCAATCCAGAATGGA,Promoter (<=1kb),7,109449006,109493738,44733,2,Trim66-202,0,Trim66-202;Trim66-201;Trim66-203,Trim66;Trim66;Trim66,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,4,330627,ENSMUSG00000031026,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11658,cg11857818,-0.000000975,0.000000924,-1.055591547,0.291976826,loss,ns,-0.0000027,0.00000157,-1.721862956,0.086091861,neg,ns,-0.000132458,0.00045983,-0.288058833,0.773494196,neg,ns,0.111542941,-0.000015,0.0000158,-0.949716728,0.342996014,neg,ns,0.971737193,Parp6,Parp6_threeUTR,9,59649946,59649995,59649994,59649995,50,-,GATGCCAACATTAATACTCAGGACCCCAAGATACAGAAGGAAATCATGCG,3' UTR,9,59617284,59650285,33002,1,Parp6-201,32662,Parp6-201;Parp6-202;Parp6-208;Parp6-203;Parp6-210;Parp6-205;Parp6-212,Parp6;Parp6;Parp6;Parp6;Parp6;Parp6;Parp6,0;0;0;0;0;0;1749,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,5,67287,ENSMUSG00000025237,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
19053,cg17205649,0.00000779,0.0000314,0.248275893,0.804085334,gain,ns,-0.0000918,0.0000533,-1.721747473,0.086112818,neg,ns,0.058629151,0.015619132,3.753675443,0.00020803,pos,ns,3.681874289,-0.002826084,0.000537141,-5.261348797,0.000000267,neg,yes,0.354857535,Cdk12,Cdk12_Intergenic_downstream,11,98290102,98290151,98290102,98290103,50,+,CGTTCCTGCCAAATCCATCCCAACATCTTGGCCTGGCATCAGGGCGGCAT,Distal Intergenic,11,98263502,98268011,4510,1,Cdk12-204,26600,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,25,69131,ENSMUSG00000003119,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10229,cg17830621,-0.0000207,0.00000706,-2.926798723,0.003677944,loss,ns,0.0000206,0.000012,1.721606758,0.086138361,pos,ns,0.014997544,0.00351229,4.270019062,0.000026,pos,ns,4.584720426,-0.00040332,0.000120787,-3.339089555,0.000943086,neg,ns,0.847092925,Tcf7,Tcf7_Exon,11,52253907,52253956,52253907,52253908,50,-,CGGGGCTGGGGCAGCGGCCTTCTCCGGGTAAGTACCGAATGCATTTCTTT,"Exon (Tcf7-201/Tcf7, exon 10 of 10)",11,52252371,52282571,30201,2,Tcf7-201,28615,Tcf7-201;Tcf7-202;Tcf7-203,Tcf7;Tcf7;Tcf7,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,8,21414,ENSMUSG00000000782,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24875,cg22247263,0.00000656,0.0000052,1.261350914,0.208130789,gain,ns,0.0000152,0.00000884,1.721509716,0.086155979,pos,ns,0.000658682,0.002590193,0.254298462,0.799433585,pos,ns,0.097217611,0.0000899,0.0000891,1.009109915,0.313708913,pos,ns,0.452333228,Pitx2,Pitx2_Intron,3,129202573,129202622,129202573,129202574,50,-,CGAACAGACATCTCAATCAGGGACTAATCCTGTGATTTTACTGCAGAATC,"Intron (Pitx2-207/Pitx2, intron 1 of 4)",3,129199878,129219590,19713,1,Pitx2-207,2695,Pitx2-207;Pitx2-201;Pitx2-203;Pitx2-205;Pitx2-204,Pitx2;Pitx2;Pitx2;Pitx2;Pitx2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,24,18741,ENSMUSG00000028023,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
5070,cg15677754,-0.00000403,0.00000358,-1.125436372,0.261274733,loss,ns,-0.0000105,0.00000608,-1.721359147,0.086183321,neg,ns,-0.002960143,0.001782663,-1.660517325,0.0978215,neg,ns,1.009565681,0.000021,0.0000613,0.342710723,0.732048357,pos,ns,0.909362315,Fosl2,Fosl2_Exon,5,32153121,32153170,32153121,32153122,50,-,CGCAGAAGCAGTAGCAGCGGGGACCAATCATCAGACTCCTTGAACTCCCC,"Exon (Fosl2-201/Fosl2, exon 4 of 4)",5,32135801,32157842,22042,1,Fosl2-201,17320,Fosl2-201;Fosl2-203,Fosl2;Fosl2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,8,14284,ENSMUSG00000029135,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15467,cg13116110,0.00000603,0.0000184,0.327063095,0.743840897,gain,ns,0.0000539,0.0000313,1.7212088,0.08621063,pos,ns,0.01226556,0.009173691,1.337036425,0.18219104,pos,ns,0.739472986,-0.000221632,0.000315482,-0.702517711,0.482883535,neg,ns,0.717654882,Sall3,Sall3_Exon,18,80974719,80974768,80974767,80974768,50,-,TTTTTATTTTGTACAAATTACCCCACTTCGACATTTCTGACGTCCCAGCG,"Exon (Sall3-202/Sall3, exon 1 of 3)",18,80966376,80986771,20396,2,Sall3-201,12003,Sall3-201;Sall3-203;Sall3-202,Sall3;Sall3;Sall3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,10,20689,ENSMUSG00000024565,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
14210,cg23963604,-0.00000511,0.00000166,-3.069380375,0.002334654,loss,ns,0.00000487,0.00000283,1.721038792,0.086241519,pos,ns,0.001366344,0.000828508,1.649161977,0.100127393,pos,ns,0.99944709,-0.0000404,0.0000285,-1.419462692,0.156768917,neg,ns,0.049670137,Mnt,Mnt_Exon,11,74831330,74831379,74831378,74831379,50,+,TGAGCATAGAGACGCTACTGGAGGCGGCCCGCTTCCTGGAATGGCAAGCG,Promoter (<=1kb),11,74830920,74845725,14806,1,Mnt-201,410,Mettl16-205;Mnt-201;Mnt-203,Mettl16;Mnt;Mnt,60500;0;-4947,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,17,17428,ENSMUSG00000000282,conserved gene and region,11,74831171,74831413,243,*,243,27,0.720164609,0.867168914,0.111111111,3.45E-22,CpGisland,TRUE,U1,Pr-A
26948,cg12277584,-0.0000415,0.0000127,-3.257283763,0.001249548,loss,ns,-0.0000373,0.0000217,-1.720910296,0.086264871,neg,ns,-0.024449075,0.006342811,-3.854612009,0.000140932,neg,ns,3.850991848,0.000560329,0.000218129,2.568798059,0.010672985,pos,ns,0.67565681,Ski,Ski_Intergenic_upstream,4,155235387,155235436,155235435,155235436,50,+,GAACTTACACCCTTTTGGGTTTGCTATTTTTACCCACCCTGAGCCTTCCG,Distal Intergenic,4,155154075,155222592,68518,2,Ski-201,-12795,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,8,20481,ENSMUSG00000029050,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
18064,cg25865150,-0.0000507,0.000013,-3.912257052,0.00011241,loss,ns,0.0000379,0.000022,1.720762736,0.086291695,pos,ns,0.007513026,0.006452507,1.164357604,0.245174406,pos,ns,0.610524869,-0.000111658,0.000221901,-0.503189756,0.615188198,neg,ns,0.69997344,Pola1,Pola1_Intron,X,93458057,93458106,93458057,93458058,50,+,CGATTAACACAAATGCTTTGTCAGATCAAAGATAAAACCTGCACCGCCCA,"Intron (Pola1-201/Pola1, intron 34 of 36)",20,93304767,93632155,327389,2,Pola1-201,174049,Pola1-201,Pola1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,59,62,18968,ENSMUSG00000006678,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21396,cg19470227,-0.00000867,0.00000176,-4.937828644,0.00000129,loss,yes,0.00000513,0.00000298,1.720659466,0.086310471,pos,ns,0.000332493,0.000873728,0.380545615,0.703801068,pos,ns,0.152550078,-0.0000571,0.00003,-1.899646504,0.058407454,neg,ns,0.961411065,Zswim6,Zswim6_Intergenic_downstream,13,107617531,107617580,107617531,107617532,50,-,CGGCTTGTTAAATAAGTTAATAAATGACTGTGCATTAATCAAAGTGACAA,Distal Intergenic,13,107725804,107734026,8223,2,Zswim6-202,116495,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,26,67263,ENSMUSG00000032846,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7555,cg10591676,0.00000238,0.00000171,1.392350272,0.164814289,gain,ns,0.00000501,0.00000291,1.720433242,0.086351614,pos,ns,0.001539394,0.000852445,1.805857193,0.071910532,pos,ns,1.143207496,-0.0000665,0.0000293,-2.269989448,0.023894547,neg,ns,0.046695404,Sobp,Sobp_fiveUTR,10,43174071,43174120,43174119,43174120,50,+,TGTTTTTGTGTCTGGTTTCTGTGGAGATGAAATGGCTGCTGCCGCCGCCG,Promoter (<=1kb),10,43002500,43174530,172031,2,Sobp-201,410,Sobp-201;Sobp-202,Sobp;Sobp,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,19,109205,ENSMUSG00000038248,conserved gene and region,10,43174113,43174627,515,*,515,69,0.761165049,0.951991856,0.133980583,2.29E-62,CpGisland,TRUE,U3,Pr-B
17961,cg10572221,0.000000932,0.00000517,0.180308193,0.857028436,gain,ns,0.0000151,0.00000878,1.720145477,0.086403973,pos,ns,0.006307809,0.002571253,2.453204422,0.014709365,pos,ns,1.83240607,-0.000190975,0.0000884,-2.159734238,0.031559704,neg,ns,0.908508656,Lpcat2,Lpcat2_Exon,8,92873033,92873082,92873081,92873082,50,+,TCCTTTTTTCCCAAGATACTAGTTTTCCCAGAAGGTACTTGTACTAATCG,"Exon (Lpcat2-201/Lpcat2, exon 5 of 14)",8,92855339,92919279,63941,1,Lpcat2-201,17694,Lpcat2-201;Lpcat2-204;Lpcat2-205;Lpcat2-202,Lpcat2;Lpcat2;Lpcat2;Lpcat2,0;0;0;17553,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,270084,ENSMUSG00000033192,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14978,cg16492911,0.0000906,0.0000244,3.705990856,0.000249322,gain,ns,-0.0000714,0.0000415,-1.720111497,0.086410157,neg,ns,0.082414563,0.012160942,6.776988335,6.19E-11,pos,yes,10.20837464,-0.002407445,0.000418214,-5.756493154,2.06E-08,neg,yes,0.547494753,2610507B11Rik,2610507B11Rik_Exon,11,78289352,78289401,78289400,78289401,50,-,AACACATGGACATGGCTAGACTTTGCCATGGCTGTCAAAAGGGACAGCCG,"Exon (2610507B11Rik-201/2610507B11Rik, exon 38 of 39)",11,78261752,78290623,28872,1,2610507B11Rik-201,27600,2610507B11Rik-201;2610507B11Rik-203;2610507B11Rik-208;Rskr-201;Rskr-207;Rskr-206;Rskr-202;Rskr-203;Rskr-204;Rskr-205,2610507B11Rik;2610507B11Rik;2610507B11Rik;Rskr;Rskr;Rskr;Rskr;Rskr;Rskr;Rskr,0;3941;0;-1440;-1466;-1491;-1493;-1528;-2155;-4406,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,72503,ENSMUSG00000010277,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26222,cg16226655,-0.00000203,0.00000289,-0.701622641,0.483440918,loss,ns,0.00000845,0.00000491,1.719977914,0.086434473,pos,ns,0.003019254,0.001439447,2.097509612,0.036758041,pos,ns,1.434647646,-0.0000793,0.0000495,-1.602795212,0.109998259,neg,ns,0.941137546,Sec23b,Sec23b_Exon,2,144574660,144574709,144574708,144574709,50,-,GTTATAGACCTCTCGGGAACTGAAGATTGCAGGAGCCATTGGTCCATGCG,"Exon (Sec23b-201/Sec23b, exon 11 of 20)",2,144556256,144590749,34494,1,Sec23b-201,18404,Sec23b-201;Sec23b-202;Sec23b-205,Sec23b;Sec23b;Sec23b,0;0;-2414,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,27054,ENSMUSG00000027429,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18326,cg08511741,0.000114041,0.0000192,5.937826901,7.74E-09,gain,yes,-0.0000561,0.0000326,-1.719901302,0.08644842,neg,ns,0.016994915,0.009558984,1.777899781,0.076400505,pos,ns,1.116903769,-0.000651766,0.000328733,-1.982661831,0.048287693,neg,ns,0.317198276,Plxnc1,Plxnc1_threeUTR,10,94792581,94792630,94792581,94792582,50,-,CGAGCCCTTTCAACAATGTTGCAACACTGTTAGTTTTTGGTTTAAACACA,3' UTR,10,94790866,94944835,153970,2,Plxnc1-201,152205,Cep83-201;Cep83-202;Plxnc1-201,Cep83;Cep83;Plxnc1,103927;52497;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,5,54712,ENSMUSG00000074785,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6210,cg18501094,-0.0000167,0.00000437,-3.823983091,0.000158748,loss,ns,0.0000128,0.00000742,1.719507281,0.086520184,pos,ns,0.002737649,0.002174142,1.259185919,0.20891049,pos,ns,0.680039753,-0.000142178,0.0000748,-1.901577879,0.058153316,neg,ns,0.907429284,Gm9211,Gm9211_Intergenic_downstream,7,36331583,36331632,36331631,36331632,50,-,TGATGCAATTTAGCAGCTTGGCAGTTTAAAATTGGGCAATGAATCACACG,Distal Intergenic,7,36234292,36235266,975,1,Gm9211-201,97340,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,12,15,668507,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16546,cg12574219,-0.000000848,0.00000126,-0.672006985,0.502079764,loss,ns,0.00000369,0.00000215,1.719460826,0.086528648,pos,ns,0.000920751,0.000628416,1.465192039,0.143881994,pos,ns,0.841993551,0.00000623,0.0000216,0.28818876,0.773394838,pos,ns,0.970904122,Camkmt,Camkmt_Intron,17,85394085,85394134,85394133,85394134,50,-,GTTACACTGATTGGCATTTGACAAACCTGTCGCTCTTATACAATGTGTCG,"Intron (Camkmt-201/Camkmt, intron 5 of 10)",17,85090552,85458588,368037,1,Camkmt-201,303533,Camkmt-201,Camkmt,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,41,44,73582,ENSMUSG00000071037,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10687,cg21361327,-0.00000837,0.00000195,-4.298859636,0.000023,loss,ns,0.00000569,0.00000331,1.719392908,0.086541024,pos,ns,0.001127531,0.000969141,1.163433091,0.245548549,pos,ns,0.609862628,-0.000044,0.0000333,-1.319447057,0.187993354,neg,ns,0.948819892,Zfp608,Zfp608_Intron,18,54978516,54978565,54978516,54978517,50,+,CGTGCAAGTAAAACAGCAGTCATAATGTGGAAATTTCAGTCACATTTTGC,"Intron (Zfp608-201/Zfp608, intron 2 of 9)",18,54888048,54990166,102119,2,Zfp608-201,11601,Zfp608-201;Zfp608-203,Zfp608;Zfp608,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,32,269023,ENSMUSG00000052713,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
24980,cg17385254,-0.00000381,0.0000019,-2.007247034,0.045591108,loss,ns,-0.00000555,0.00000323,-1.719365078,0.086546096,neg,ns,-0.001675002,0.000945259,-1.77200332,0.077376231,neg,ns,1.111392431,0.0000136,0.0000325,0.418375946,0.675961955,pos,ns,0.949344004,Fgfr2,Fgfr2_threeUTR,7,130909591,130909640,130909591,130909592,50,-,CGGCAGGCCAGAAGGCTGTCGAACCCTTGTATACAGAGGTATACATCAAG,3' UTR,7,130162451,133123350,2960900,2,Fgfr2-217,2213710,Fgfr2-217;Plekha1-203;Plekha1-202;Plekha1-211;Plekha1-201;Plekha1-210;Plekha1-206;Plekha1-208;Plekha1-204;Plekha1-205,Fgfr2;Plekha1;Plekha1;Plekha1;Plekha1;Plekha1;Plekha1;Plekha1;Plekha1;Plekha1,0;0;0;0;0;12600;0;7346;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,9,79,14183,ENSMUSG00000030849,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26551,cg20707542,0.00000285,0.00000374,0.762491948,0.446346225,gain,ns,-0.0000109,0.00000636,-1.718910028,0.086629055,neg,ns,-0.006328674,0.001862651,-3.39767007,0.00076834,neg,ns,3.114446526,0.000126357,0.0000641,1.972590153,0.049430633,pos,ns,0.883644567,Casz1,Casz1_Intron,4,148915856,148915905,148915856,148915857,50,+,CGATGGCAGGAGGATTTTGATTGAAAGTAATTAAGCAAGCTAGCTGTAAA,"Intron (Casz1-201/Casz1, intron 4 of 15)",4,148804429,148945129,140701,1,Casz1-201,111427,Casz1-201;Casz1-202;Casz1-206,Casz1;Casz1;Casz1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,94,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11083,cg01782227,0.0000207,0.00000576,3.597569798,0.00037371,gain,ns,-0.0000168,0.00000978,-1.718679167,0.086671167,neg,ns,0.003310605,0.002866551,1.154908925,0.249017177,pos,ns,0.603770695,-0.000142058,0.0000986,-1.441036826,0.150583578,neg,ns,0.093983011,Nkx2-1,Nkx2-1_Intron,12,56535278,56535327,56535278,56535279,50,-,CGCCAGGTTTTAGGCAGCCACCAGAGGCGGGGCGTAAGCGCTAAAGCAAC,"Intron (Nkx2-1-201/Nkx2-1, intron 1 of 2)",12,56531958,56536908,4951,2,Nkx2-1-201,1581,Nkx2-1-202;Nkx2-1-201,Nkx2-1;Nkx2-1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,29,21869,ENSMUSG00000001496,mapped to different genes,12,56535178,56535355,178,*,178,14,0.573033708,0.967391304,0.078651685,1.48E-09,CpGisland,TRUE,U13,Hc-P
22187,cg13732832,0.000029,0.00000605,4.797342565,0.0000025,gain,ns,0.0000177,0.0000103,1.718611745,0.086683469,pos,ns,0.007963735,0.003012321,2.643720767,0.008617087,pos,ns,2.064639519,0.0000743,0.000103593,0.717098528,0.473853255,pos,ns,0.100772024,Slitrk5,Slitrk5_Exon,14,111681770,111681819,111681770,111681771,50,-,CGGACTACCTCGAAGTGCTGGAAAAACAGACCACGTTTAGCCAGTTCTAA,"Exon (Slitrk5-201/Slitrk5, exon 2 of 2)",14,111675097,111683141,8045,1,Slitrk5-201,6673,Slitrk5-201;Slitrk5-202,Slitrk5;Slitrk5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,10,75409,ENSMUSG00000033214,conserved gene and region,14,111681593,111681781,189,*,189,12,0.571428571,0.780185759,0.063492064,0.00000032,CpGisland,TRUE,U3,Pr-B
23143,cg10235290,0.0000211,0.0000104,2.03797957,0.042400582,gain,ns,-0.0000302,0.0000176,-1.718556672,0.086693519,neg,ns,-0.012755605,0.005153572,-2.475099766,0.013854316,neg,ns,1.85841492,0.000425089,0.000177231,2.398502217,0.017052978,pos,ns,0.322773254,Rnf220,Rnf220_Intron,4,117335973,117336022,117336021,117336022,50,-,CATTGGATTTTATATCACACAAGGACAATGTGCCATGGGTATTAAAATCG,"Intron (Rnf220-201/Rnf220, intron 2 of 14)",4,117271463,117497052,225590,2,Rnf220-201,161030,Rnf220-201;Rnf220-202;Rnf220-207,Rnf220;Rnf220;Rnf220,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17392,cg07021418,0.00000115,0.000005,0.23044617,0.817897089,gain,ns,0.0000146,0.00000849,1.718311742,0.086738225,pos,ns,0.004782147,0.002486835,1.922985528,0.05539774,pos,ns,1.256507953,-0.000111706,0.0000855,-1.306165424,0.192464631,neg,ns,0.913147539,Ubap2l,Ubap2l_Exon,3,90019272,90019321,90019272,90019273,50,-,CGACTGAATTGGGCCGCTCTGATAACCAGACTCCTGACTCTGGTTAGATG,"Exon (Ubap2l-215/Ubap2l, exon 15 of 27)",3,90000140,90052455,52316,2,Ubap2l-215,33134,Ubap2l-215;Ubap2l-201;Ubap2l-202;Ubap2l-208;Ubap2l-203;Ubap2l-211;Ubap2l-204;Ubap2l-220;Ubap2l-207;Ubap2l-219;Ubap2l-205;Ubap2l-212;Ubap2l-222;Ubap2l-218;Ubap2l-210,Ubap2l;Ubap2l;Ubap2l;Ubap2l;Ubap2l;Ubap2l;Ubap2l;Ubap2l;Ubap2l;Ubap2l;Ubap2l;Ubap2l;Ubap2l;Ubap2l;Ubap2l,0;0;0;0;0;0;0;0;-2979;0;0;-1643;-775;0;4109,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,15,74383,ENSMUSG00000042520,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14987,cg04551707,0.00000328,0.00000876,0.375005707,0.707912651,gain,ns,-0.0000256,0.0000149,-1.717977244,0.08679931,neg,ns,-0.015117711,0.004359599,-3.46768419,0.00059918,neg,ns,3.222442333,0.0000845,0.000149926,0.563305771,0.573633898,pos,ns,0.776435241,Unc119,Unc119_Exon,11,78348552,78348601,78348552,78348553,50,-,CGTATGAGACCCAGTCTGACAGCTTCTACTTCGTGGATGACCGGCTGGTG,"Exon (Unc119-201/Unc119, exon 5 of 5)",11,78343482,78349164,5683,1,Unc119-201,5070,Unc119-201;Unc119-206;Unc119-203;Unc119-205;Unc119-202;Unc119-207;Unc119-204,Unc119;Unc119;Unc119;Unc119;Unc119;Unc119;Unc119,0;5054;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,22248,ENSMUSG00000002058,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1299,cg15976440,0.0000721,0.0000134,5.367953136,0.000000156,gain,yes,-0.0000392,0.0000228,-1.717765106,0.086838068,neg,ns,-0.002059695,0.006688202,-0.307959426,0.75832002,neg,ns,0.120147479,-0.0000361,0.000230007,-0.157122799,0.875250354,neg,ns,0.267561913,Fezf2,Fezf2_Intergenic_downstream,14,12337884,12337933,12337932,12337933,50,+,TCTCTTTCTCTGCTCCATCAGGGAGACAAATTACTTTCCAAAAGGGATCG,Distal Intergenic,14,12342094,12345844,3751,2,Fezf2-203,7911,Fezf2-203;Fezf2-201,Fezf2;Fezf2,0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,21,45,54713,ENSMUSG00000021743,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
26335,cg11270281,0.00000877,0.00000646,1.357583995,0.175583148,gain,ns,0.0000189,0.000011,1.717597497,0.0868687,pos,ns,-0.001632216,0.003216829,-0.507399025,0.612235644,neg,ns,0.213081389,0.000143026,0.000110626,1.292871878,0.197018088,pos,ns,0.876327567,Kiz,Kiz_Intergenic_upstream,2,146824088,146824137,146824136,146824137,50,+,CATATTATTGCCATGTTCTGGGACTGAATTGTTTACAAGTGTCTTTATCG,Distal Intergenic,2,146855864,146970097,114234,1,Kiz-201,-31727,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,29,228730,ENSMUSG00000074749,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3039,cg17296202,-0.00000121,0.00000441,-0.274836841,0.783624668,loss,ns,0.0000129,0.0000075,1.717571987,0.086873364,pos,ns,0.000681922,0.002196202,0.310500631,0.756388935,pos,ns,0.121254833,0.0000906,0.0000755,1.199830872,0.231121199,pos,ns,0.906465867,Lrmda,Lrmda_Intron,14,22457841,22457890,22457841,22457842,50,+,CGTGAAATTGGAAACATAGCTGAGAACAAAGTAAATTTACATGGTTTGGT,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,438129,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206;Lrmda-202,Lrmda;Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2176,cg08438560,-0.00000154,0.00000109,-1.41399585,0.158366596,loss,ns,0.00000317,0.00000184,1.717482239,0.08688977,pos,ns,0.000796064,0.000540461,1.472934123,0.141783389,pos,ns,0.848374646,-0.0000246,0.0000186,-1.324524122,0.186304658,neg,ns,0.974791182,Kdm6a,Kdm6a_threeUTR,X,18251040,18251089,18251040,18251041,50,-,CGCACAAACCTGACCAGCAGCGCAGAGGAGCCGTGGAAAAACCAACTATC,3' UTR,20,18162575,18279936,117362,1,Kdm6a-201,88465,Kdm6a-201;Kdm6a-202;Kdm6a-205;Kdm6a-203;Kdm6a-207;Kdm6a-206;Kdm6a-208;Kdm6a-210,Kdm6a;Kdm6a;Kdm6a;Kdm6a;Kdm6a;Kdm6a;Kdm6a;Kdm6a,0;0;0;0;4995;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,threeUTR,7,14,22289,ENSMUSG00000037369,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7770,cg23451903,-0.00000279,0.00000344,-0.811150053,0.417901835,loss,ns,0.00001,0.00000585,1.717355371,0.086912967,pos,ns,0.002354708,0.001713269,1.374395107,0.170311807,pos,ns,0.768755244,-0.0000485,0.0000589,-0.822563384,0.411388585,neg,ns,0.912987248,Arhgap15,Arhgap15_Intron,2,44243006,44243055,44243006,44243007,50,+,CGGTTGCTGATGATAGTAGGCAAACATTAACATAATAATTAGTGTCTTGT,"Intron (Arhgap15-203/Arhgap15, intron 11 of 14)",2,43748824,44395953,647130,1,Arhgap15-203,494182,Arhgap15-203;Arhgap15-202;Arhgap15-201,Arhgap15;Arhgap15;Arhgap15,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,72,78,76117,ENSMUSG00000049744,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16591,cg11008210,0.00000761,0.00000273,2.786413071,0.005657972,gain,ns,-0.00000797,0.00000464,-1.717335299,0.086916638,neg,ns,-0.000274706,0.001360179,-0.201963172,0.840077985,neg,ns,0.075680396,0.0000336,0.0000468,0.71790092,0.473359036,pos,ns,0.047650446,Six3,Six3_Intron,17,85618566,85618615,85618566,85618567,50,-,CGAGCTGCTTTCAAAAAGTTGAACACAATATTCGGAAACCCACCCGTAGG,"Intron (Six3-202/Six3, intron 1 of 2)",17,85613608,85625222,11615,1,Six3-202,4958,Six3-202;Six3-203;Six3-201,Six3;Six3;Six3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,24,20473,ENSMUSG00000038805,mapped to different genes,17,85618467,85618636,170,*,170,15,0.652941177,0.831160365,0.088235294,6.13E-11,CpGisland,TRUE,U13,Hc-P
11433,cg13612652,0.0000147,0.00000359,4.080888914,0.0000571,gain,ns,-0.0000105,0.00000611,-1.717217643,0.086938156,neg,ns,-0.000911553,0.001788698,-0.509618586,0.610681294,neg,ns,0.214185383,0.0000873,0.0000615,1.419374413,0.156794619,pos,ns,0.921738536,Fgf9,Fgf9_fiveUTR,14,58083197,58083246,58083245,58083246,50,-,ACAGGCATTCTGGAATTTATCAGTATAGCAGTGGGCCTGGTCAGCATTCG,5' UTR,14,58070547,58112720,42174,1,Fgf9-203,12650,Fgf9-203;Fgf9-201;Fgf9-202;Fgf9-204,Fgf9;Fgf9;Fgf9;Fgf9,0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,8,14180,ENSMUSG00000021974,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8585,cg06399229,-0.00000197,0.00000217,-0.907142003,0.365036304,loss,ns,-0.00000633,0.00000369,-1.717209269,0.086939687,neg,ns,-0.000501206,0.001080537,-0.463849373,0.643081201,neg,ns,0.191734186,-0.00000671,0.0000372,-0.180699036,0.856721891,neg,ns,0.914415476,Snrnp70,Snrnp70_Exon,7,45383187,45383236,45383235,45383236,50,+,GCAGTGACAATAAGAACAGTCAATTAATACGGCGGCCCCTGGACACGCCG,"Exon (Snrnp70-213/Snrnp70, exon 1 of 1)",7,45376453,45395742,19290,2,Snrnp70-201,12506,Snrnp70-201;Snrnp70-207;Snrnp70-216;Snrnp70-215;Snrnp70-214;Snrnp70-204;Snrnp70-209;Snrnp70-213;Snrnp70-206;Snrnp70-205;Snrnp70-217;Snrnp70-203;Snrnp70-202;Snrnp70-212;Snrnp70-211,Snrnp70;Snrnp70;Snrnp70;Snrnp70;Snrnp70;Snrnp70;Snrnp70;Snrnp70;Snrnp70;Snrnp70;Snrnp70;Snrnp70;Snrnp70;Snrnp70;Snrnp70,0;0;0;0;0;0;-1870;0;11563;4534;11936;11958;11483;12473;9542,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,8,20637,ENSMUSG00000063511,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2393,cg04391455,0.0000515,0.00000484,10.63053006,1.04E-22,gain,yes,-0.0000141,0.00000822,-1.717069859,0.08696519,neg,ns,0.006440698,0.002409346,2.67321452,0.007910652,pos,ns,2.101787731,-0.000197397,0.0000829,-2.382378353,0.017803888,neg,ns,0.06262373,Tfap2b,Tfap2b_Exon,1,19234233,19234282,19234233,19234234,50,+,CGAGGCGCTCAAAGGCATGGACAAGATGTTCTTGAACAACACCACCACTA,"Exon (Tfap2b-201/Tfap2b, exon 7 of 7)",1,19208914,19238576,29663,1,Tfap2b-201,25319,Tfap2b-201;Tfap2b-204;Tfap2b-202,Tfap2b;Tfap2b;Tfap2b,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,40,21419,ENSMUSG00000025927,conserved gene and region,1,19234070,19234239,170,*,170,15,0.647058824,0.866168478,0.088235294,6.13E-11,CpGisland,TRUE,U13,Hc-P
832,cg25472733,0.000000131,0.000000984,0.132645258,0.894559995,gain,ns,0.00000287,0.00000167,1.71705737,0.086967475,pos,ns,0.000334693,0.000489683,0.683487854,0.494809154,pos,ns,0.305562275,0.00000233,0.0000168,0.138477365,0.889953066,pos,ns,0.972102018,1810013L24Rik,1810013L24Rik_Exon,16,8855942,8855991,8855990,8855991,50,-,CCACTTGGACAATGGTGGAACTAGAAAGCGTACCTCAGCCCAGTGTGGCG,"Exon (1810013L24Rik-201/1810013L24Rik, exon 4 of 4)",16,8830100,8858922,28823,1,1810013L24Rik-201,25842,1810013L24Rik-201,1810013L24Rik,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,18,19,69053,ENSMUSG00000022507,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7974,cg13821797,0.0000602,0.00000486,12.38822706,6.62E-29,gain,yes,-0.0000142,0.00000825,-1.717038568,0.086970915,neg,ns,0.009339474,0.002417445,3.863365333,0.000136198,pos,ns,3.86582805,-0.000245973,0.0000831,-2.958690274,0.003327383,neg,ns,0.1538976,Pax2,Pax2_Intergenic_upstream,19,44671347,44671396,44671395,44671396,50,+,GAAGATAAATAATAACTTACAAACAGGATTAGTTGTAAAGTCACGCTCCG,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-84649,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,19,44671390,44671489,100,*,100,13,0.74,1.06122449,0.13,8.74E-12,CpGisland,TRUE,U13,Hc-P
1346,cg00489376,-0.0000101,0.00000614,-1.642604431,0.101478723,loss,ns,0.0000179,0.0000104,1.716861119,0.087003386,pos,ns,0.006309646,0.003057736,2.063502806,0.039897043,pos,ns,1.399059295,-0.0000197,0.000105155,-0.1870287,0.851760475,neg,ns,0.92139964,Cadps,Cadps_Intron,14,12393719,12393768,12393767,12393768,50,+,TTTTTGCTGACAGATGTACAAAGGCGGAACTGCGCCGTGCAGCTTATCCG,"Intron (Cadps-210/Cadps, intron 27 of 28)",14,12372563,12823053,450491,2,Cadps-210,429285,Cadps-210;Cadps-202;Cadps-203;Cadps-204;Cadps-201;Cadps-212;Cadps-208,Cadps;Cadps;Cadps;Cadps;Cadps;Cadps;Cadps,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,34,27062,ENSMUSG00000054423,mapped to different genes,14,12393743,12393799,57,*,57,7,0.631578947,1.266666667,0.122807018,0.00000327,CpGisland,TRUE,U15,NS
2730,cg19510597,0.00017479,0.0000116,15.04206667,8.89E-39,gain,yes,-0.0000339,0.0000197,-1.716562874,0.087057984,neg,ns,0.018989516,0.005783439,3.283429588,0.001142774,pos,ns,2.942039562,-0.000654854,0.000198892,-3.292511322,0.001107714,neg,ns,0.129356154,Klhl14,Klhl14_Exon,18,21651451,21651500,21651499,21651500,50,-,GGGCATCAGGTGGTAGTTCATGGCGTCCAGCAGCAGCTTCTGGCAGACCG,Promoter (<=1kb),18,21550377,21652368,101992,2,Klhl14-201,868,Klhl14-201;Klhl14-202,Klhl14;Klhl14,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,14,38,225266,ENSMUSG00000042514,conserved gene and region,18,21651474,21651709,236,*,236,24,0.669491525,0.908128908,0.101694915,8.84E-19,CpGisland,TRUE,U3,Pr-B
16793,cg06712913,-0.00000165,0.0000017,-0.971166507,0.332222503,loss,ns,0.00000495,0.00000288,1.7165025,0.08706904,pos,ns,0.00000203,0.00084403,0.002405477,0.998082256,pos,ns,0.000833665,0.0000403,0.000029,1.389955211,0.165539752,pos,ns,0.95599761,Lrba,Lrba_Intron,3,86536901,86536950,86536901,86536902,50,-,CGCATGTGGTGTATATTAGAGTACTGTTGGTAATTTTACTGCTGCTAACT,"Intron (Lrba-202/Lrba, intron 38 of 50)",3,86224680,86746712,522033,1,Lrba-202,312221,Lrba-202;Lrba-204;Lrba-201;Lrba-208,Lrba;Lrba;Lrba;Lrba,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,45,80877,ENSMUSG00000028080,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12882,cg00174687,-0.00000424,0.00000608,-0.697793434,0.485829425,loss,ns,0.0000177,0.0000103,1.716426065,0.087083038,pos,ns,0.005468069,0.003024957,1.807651828,0.071629892,pos,ns,1.144905705,-0.000212829,0.000104028,-2.045877973,0.041611946,neg,ns,0.908086733,Cadm2,Cadm2_Intergenic_upstream,16,67750067,67750116,67750115,67750116,50,+,TGCATTTATAAATAGGATTCTGCAAGCATGTGACATTACACACCTGCCCG,Distal Intergenic,16,66662190,67620908,958719,2,Cadm2-203,-129159,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,9,239857,ENSMUSG00000064115,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2885,cg20108145,-0.0000171,0.00000505,-3.383984617,0.000806225,loss,ns,0.0000147,0.00000859,1.716386047,0.087090368,pos,ns,-0.00405023,0.002515843,-1.609890253,0.108439596,neg,ns,0.964812109,0.000155867,0.0000865,1.801525067,0.07259171,pos,ns,0.934352721,Ehbp1,Ehbp1_Intron,11,22007716,22007765,22007716,22007717,50,-,CGCCATATGCTTCACAATAACTTTAAAAGTAGTGAATCGGCTAATTAGCA,"Intron (Ehbp1-201/Ehbp1, intron 22 of 23)",11,22005828,22285838,280011,2,Ehbp1-201,278073,Ehbp1-201;Ehbp1-202;Ehbp1-207;Otx1-202,Ehbp1;Ehbp1;Ehbp1;Otx1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,34,45,216565,ENSMUSG00000042302,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
6006,cg26865072,-0.000000241,0.0000021,-0.114613949,0.908825321,loss,ns,0.00000614,0.00000358,1.71609714,0.087143299,pos,ns,0.0005528,0.001047521,0.527721664,0.598070041,pos,ns,0.223247952,-0.00000384,0.000036,-0.106601963,0.915173713,neg,ns,0.946384307,Vps13b,Vps13b_Exon,15,35846870,35846919,35846918,35846919,50,+,TTGGTCTTCAGCCATTTTGTGATCTGTAATGACACACAGGAGACACTGCG,"Exon (Vps13b-201/Vps13b, exon 43 of 62)",15,35371160,35931229,560070,1,Vps13b-201,475710,Vps13b-201;Vps13b-205,Vps13b;Vps13b,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,5,666173,ENSMUSG00000037646,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27473,cg22314954,-0.0000166,0.0000052,-3.191814115,0.001558833,loss,ns,-0.0000152,0.00000884,-1.715904405,0.087178625,neg,ns,0.007228842,0.002590505,2.790515119,0.005588533,pos,ns,2.25270217,-0.000246809,0.0000891,-2.770414056,0.005936339,neg,ns,0.791169116,Pbx1,Pbx1_Intron,1,168327999,168328048,168328047,168328048,50,+,TATGCAAATGCGGCCCATTCAAGGATATTTACATATCATTAATTAAAACG,"Intron (Pbx1-208/Pbx1, intron 2 of 7)",1,168119364,168432270,312907,2,Pbx1-208,104222,Pbx1-208;Pbx1-205;Pbx1-206;Pbx1-201;Pbx1-202;Pbx1-204,Pbx1;Pbx1;Pbx1;Pbx1;Pbx1;Pbx1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,84,18514,ENSMUSG00000052534,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1878,cg22255654,0.00000578,0.00000177,3.262640049,0.001226948,gain,ns,-0.00000517,0.00000301,-1.715891617,0.087180969,neg,ns,0.000422969,0.000882309,0.479389072,0.631999876,pos,ns,0.199283007,-0.0000681,0.0000303,-2.245853463,0.025417539,neg,ns,0.08288116,Rgmb,Rgmb_fiveUTR,17,15830598,15830647,15830646,15830647,50,+,CTTCAACAAAATAAACAACTCACCACAGGCATTCCCTTGTCTGCAGCGCG,Promoter (<=1kb),17,15820848,15830651,9804,2,Rgmb-202,4,Gm3292-201;Rgmb-201;Rgmb-206;Rgmb-202;Rgmb-207;Rgmb-204,Gm3292;Rgmb;Rgmb;Rgmb;Rgmb;Rgmb,2830;-4012;-4038;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,3,68799,ENSMUSG00000048027,conserved gene and region,17,15830644,15830860,217,*,217,23,0.746543779,0.761171267,0.105990783,1.88E-18,CpGisland,TRUE,U3,Pr-B
14103,cg25960553,-0.00000222,0.00000239,-0.929594838,0.353304191,loss,ns,-0.00000696,0.00000406,-1.715507376,0.087251431,neg,ns,-0.002037004,0.001189348,-1.712705964,0.087766552,neg,ns,1.056670961,0.000022,0.0000409,0.538000159,0.590962973,pos,ns,0.914908138,Pafah1b1,Pafah1b1_Exon,11,74679544,74679593,74679592,74679593,50,+,TCAGCACAACTCAAAATAAACTTCCCCCCAGAATGGAACAGAACTCCACG,"Exon (Pafah1b1-203/Pafah1b1, exon 9 of 9)",11,74673949,74724335,50387,2,Pafah1b1-203,44742,Pafah1b1-203;Pafah1b1-201;Pafah1b1-202;Pafah1b1-205,Pafah1b1;Pafah1b1;Pafah1b1;Pafah1b1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,5,18472,ENSMUSG00000020745,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7102,cg00531909,-0.000000871,0.00000161,-0.53968957,0.589798575,loss,ns,0.0000047,0.00000274,1.715282283,0.08729273,pos,ns,0.001176225,0.000803309,1.464224206,0.144146014,pos,ns,0.841197363,-0.0000549,0.0000276,-1.988121541,0.047677501,neg,ns,0.956521949,Gm5973,Gm5973_Intergenic_upstream,1,40967639,40967688,40967639,40967640,50,+,CGGAAACTCCAAATGTAAAGATGTATTAAGGAAATATCTCAAAGTTATTA,Distal Intergenic,1,40863737,40864232,496,2,Gm5973-201,-103407,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,18,18,546733,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17123,cg02951552,0.0000235,0.00000404,5.831387586,1.38E-08,gain,yes,-0.0000118,0.00000686,-1.715121168,0.087322301,neg,ns,-0.001300698,0.002008431,-0.647619059,0.517710681,neg,ns,0.285912874,0.0000441,0.0000691,0.63913441,0.523207464,pos,ns,0.099679375,Mex3a,Mex3a_Exon,3,88532742,88532791,88532742,88532743,50,-,CGCTCTCTACAAAGAGGCCGAGCTGCGCCTGAAGGGCAGCAGCAACACCA,Promoter (<=1kb),3,88532395,88541396,9002,1,Mex3a-201,347,Mex3a-201,Mex3a,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,72640,ENSMUSG00000074480,conserved gene and region,3,88532556,88532971,416,*,416,54,0.757211539,0.908223498,0.129807692,4.79E-48,CpGisland,TRUE,NA,NRS
2273,cg09391013,-0.00000151,0.0000024,-0.629471958,0.529503745,loss,ns,0.00000699,0.00000408,1.71495493,0.08735282,pos,ns,0.004073905,0.001194074,3.41176895,0.000731052,pos,ns,3.136051499,-0.000125146,0.0000411,-3.04758226,0.002505421,neg,ns,0.956278222,Meis1,Meis1_threeUTR,11,18882620,18882669,18882620,18882621,50,-,CGATGAACACCTTCGAATAAGGTCTCCAGGCTCTAACAATGAATGGCTGC,3' UTR,11,18879817,19018985,139169,2,Meis1-206,136316,Meis1-206;Meis1-202;Meis1-209;Meis1-201;Meis1-203;Meis1-208;Meis1-207,Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,12,88,17268,ENSMUSG00000020160,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7716,cg27111554,-0.00000129,0.00000158,-0.817881241,0.414053191,loss,ns,0.00000459,0.00000268,1.714821898,0.087377249,pos,ns,0.002193301,0.000784448,2.795981642,0.005497197,pos,ns,2.259858694,-0.0000702,0.000027,-2.603441794,0.009673309,neg,ns,0.969888626,Arhgap15,Arhgap15_Intron,2,43949971,43950020,43950019,43950020,50,+,CAAGAAATTAACACGTTTTTGCTTCGCTAATTCACAGTTCTTTTAATACG,"Intron (Arhgap15-203/Arhgap15, intron 6 of 14)",2,43748824,44395953,647130,1,Arhgap15-203,201147,Arhgap15-203;Arhgap15-202;Arhgap15-201,Arhgap15;Arhgap15;Arhgap15,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,72,78,76117,ENSMUSG00000049744,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12527,cg18261337,-0.00000228,0.00000365,-0.626260348,0.531605045,loss,ns,0.0000106,0.00000619,1.714659508,0.087407077,pos,ns,0.005121288,0.001814271,2.822780328,0.005068724,pos,ns,2.295101326,-0.000138085,0.0000624,-2.21316834,0.02761411,neg,ns,0.938493955,Dennd4a,Dennd4a_Exon,9,64873017,64873066,64873065,64873066,50,+,TCACATCAAAAATTCTATAACATGATGACCAAAACACAAATGTTTATTCG,"Exon (Dennd4a-201/Dennd4a, exon 15 of 34)",9,64811340,64919667,108328,1,Dennd4a-201,61677,Dennd4a-201,Dennd4a,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,102442,ENSMUSG00000053641,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1258,cg20682817,0.0000549,0.0000143,3.836499733,0.000151224,gain,ns,0.0000417,0.0000243,1.714384007,0.0874577,pos,ns,0.029270097,0.00711797,4.1121411,0.0000503,pos,ns,4.298762106,-0.000830376,0.000244786,-3.392246331,0.000783151,neg,ns,0.144622864,Bcor,Bcor_Exon,X,12136925,12136974,12136973,12136974,50,-,GGCAGTTGCAATCAGTTTCCGAAAGGTCAGCCAAGGTCCTCCGGCTCTCG,"Exon (Bcor-208/Bcor, exon 3 of 5)",20,12036743,12160355,123613,2,Bcor-201,23381,Bcor-201;Bcor-208,Bcor;Bcor,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,74,71458,ENSMUSG00000040363,conserved gene but different region,X,12136836,12137187,352,*,352,27,0.613636364,0.817337461,0.076704546,1.07E-17,CpGisland,TRUE,NA,NRS
19715,cg04182655,-0.0000211,0.00000405,-5.225537335,0.00000032,loss,yes,0.0000118,0.00000687,1.714074798,0.087514545,pos,ns,0.001813346,0.002013879,0.900424478,0.368593352,pos,ns,0.433452502,0.000068,0.0000693,0.98230136,0.32671741,pos,ns,0.960417684,Fam168a,Fam168a_threeUTR,7,100835411,100835460,100835411,100835412,50,-,CGTACAGCTACGTGCCCCCACACTGGTAAAGCCTGCAGCCCATCCAAGTG,3' UTR,7,100706635,100841381,134747,1,Fam168a-202,128776,Fam168a-202;Fam168a-204;Fam168a-201;Fam168a-205;Fam168a-206;Fam168a-210,Fam168a;Fam168a;Fam168a;Fam168a;Fam168a;Fam168a,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,5,319604,ENSMUSG00000029461,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14519,cg16169211,-0.00000759,0.00000451,-1.680556259,0.093856425,loss,ns,0.0000131,0.00000767,1.714027247,0.08752329,pos,ns,0.003731981,0.002246947,1.660911571,0.097742214,pos,ns,1.009917827,-0.000149121,0.0000773,-1.929812615,0.054542294,neg,ns,0.926059112,Ptprd,Ptprd_Exon,4,76139270,76139319,76139318,76139319,50,-,TGCGCTTCAGAACTAAGCACTTACCAATAGATTCTGGAGATTTAAATACG,"Exon (Ptprd-206/Ptprd, exon 6 of 36)",4,75941238,76449980,508743,2,Ptprd-206,310661,Ptprd-206;Ptprd-213;Ptprd-220;Ptprd-203;Ptprd-217;Ptprd-218;Ptprd-219;Ptprd-201;Ptprd-205;Ptprd-202,Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,13,32,19266,ENSMUSG00000028399,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6506,cg21434415,-0.0000623,0.0000119,-5.244834954,0.00000029,loss,yes,0.0000346,0.0000202,1.71393917,0.087539489,pos,ns,-0.010737758,0.005913424,-1.815827479,0.070362793,neg,ns,1.152656932,0.000301174,0.000203362,1.480972162,0.139629643,pos,ns,0.601723738,Zfp536,Zfp536_Intron,7,37563493,37563542,37563541,37563542,50,-,CTGGGCCAAGCAACCAGCGAATGATAATGACCTCAGAAATCTGCTGTTCG,"Intron (Zfp536-211/Zfp536, intron 1 of 3)",7,37318024,37568390,250367,2,Zfp536-211,4848,Zfp536-211;Zfp536-202;Zfp536-201;Zfp536-203;Zfp536-206,Zfp536;Zfp536;Zfp536;Zfp536;Zfp536,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,73,112,243937,ENSMUSG00000043456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
18547,cg04414148,0.0000709,0.0000153,4.618267725,0.00000568,gain,ns,0.0000447,0.0000261,1.713759748,0.087572495,pos,ns,0.016042982,0.007636341,2.100872876,0.036459405,pos,ns,1.438190425,0.000247293,0.000262613,0.941664395,0.347097715,pos,ns,0.162895336,Hoxb8,Hoxb8_Exon,11,96282998,96283047,96283046,96283047,50,-,ATACAAAACCGGGGAGTCCCTGCGCCCCAATTATTATGACTGCGGCTTCG,"Exon (Hoxb8-201/Hoxb8, exon 1 of 2)",11,96281905,96285315,3411,1,Hoxb8-201,1093,Hoxb7-201;Hoxb8-201;Hoxb8-202;Hoxb8-203,Hoxb7;Hoxb8;Hoxb8;Hoxb8,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,26,15416,ENSMUSG00000056648,mapped to different genes,11,96282929,96283401,473,*,473,44,0.642706131,0.918325023,0.093023256,3.13E-32,CpGisland,TRUE,NA,NRS
10166,cg17569124,0.000115684,0.0000119,9.7497657,9.17E-20,gain,yes,-0.0000345,0.0000202,-1.713348655,0.087648158,neg,ns,0.017806065,0.005905481,3.015176115,0.002780592,pos,ns,2.555862764,-0.000645248,0.000203089,-3.177169958,0.001637079,neg,ns,0.143799011,Gm28308,Gm28308_Intron,6,52204719,52204768,52204767,52204768,50,+,GTCGAATTGAGGTTACAGCCCATTATGGCAAAATTATTGCATTTCCCTCG,"Intron (Hoxaas3-202/Hoxaas3-202, intron 1 of 2)",6,52163359,52213339,49981,2,Gm28308-201,8571,Gm28308-201;Hoxa3-201;Hoxa3-203;Hoxa5-201;Hoxa6-201,Gm28308;Hoxa3;Hoxa3;Hoxa5;Hoxa6,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,46,103,,NA,mapped to different genes,6,52204767,52204843,77,*,77,8,0.584415584,1.222222222,0.103896104,0.00000163,CpGisland,TRUE,U3,Pr-B
16384,cg12900732,-0.00000234,0.00000243,-0.966756749,0.334419247,loss,ns,0.00000706,0.00000412,1.713199961,0.087675538,pos,ns,0.00358596,0.001207013,2.970937972,0.003201083,pos,ns,2.494703025,-0.000108536,0.0000415,-2.614741782,0.009365869,neg,ns,0.947656065,Trip12,Trip12_Exon,1,84794169,84794218,84794217,84794218,50,+,GGAGAATTGGTCCTGTTGTAGTCTGGACTAGCACTGCGCTTCACTCCTCG,"Exon (Trip12-201/Trip12, exon 3 of 41)",1,84721189,84839304,118116,2,Trip12-201,45086,Trip12-201;Trip12-206;Trip12-207;Trip12-205;Trip12-208;Trip12-216;Trip12-211;Trip12-214;Trip12-210,Trip12;Trip12;Trip12;Trip12;Trip12;Trip12;Trip12;Trip12;Trip12,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,11,14897,ENSMUSG00000026219,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21197,cg07884771,-0.0000138,0.00000439,-3.134265271,0.001887717,loss,ns,-0.0000128,0.00000746,-1.713118214,0.087690594,neg,ns,-0.004660471,0.002186608,-2.131369606,0.033845054,neg,ns,1.470504787,0.000021,0.0000752,0.279588775,0.779979471,pos,ns,0.922688723,Mpped2,Mpped2_Intron,2,106716138,106716187,106716138,106716139,50,+,CGGAACACTCTCTCAGGATGCTGTTAGGGCCAAGCGGAATCTCATTAGGG,"Intron (Mpped2-202/Mpped2, intron 2 of 6)",2,106693269,106868356,175088,1,Mpped2-202,22869,Mpped2-202;Mpped2-206;Mpped2-201;Mpped2-203;Mpped2-204,Mpped2;Mpped2;Mpped2;Mpped2;Mpped2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,33,77015,ENSMUSG00000016386,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5853,cg01029944,0.00000184,0.00000291,0.633963002,0.526572467,gain,ns,0.00000846,0.00000494,1.713060278,0.087701266,pos,ns,0.001966125,0.001446609,1.359127376,0.175094161,pos,ns,0.756728336,0.0000364,0.0000497,0.73094273,0.46536623,pos,ns,0.941928352,Cnot4,Cnot4_Exon,6,35024245,35024294,35024293,35024294,50,-,GCAGTCCACCAAAGTTGATGTTAATGTTGGGTAGAAGTGCCCTTAGCCCG,Promoter (<=1kb),6,35022065,35024864,2800,2,Cnot4-205,570,Cnot4-205;Cnot4-206;Cnot4-202;Cnot4-203,Cnot4;Cnot4;Cnot4;Cnot4,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,10,53621,ENSMUSG00000038784,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16155,cg23131353,0.0000221,0.0000105,2.100598619,0.036483679,gain,ns,-0.0000307,0.0000179,-1.712790972,0.087750885,neg,ns,0.002664721,0.005242956,0.508247908,0.611640967,pos,ns,0.213503434,0.0000422,0.000180305,0.234045789,0.815103922,pos,ns,0.423992508,Ckap4,Ckap4_Promoter,10,84533197,84533246,84533197,84533198,50,+,CGGCTTCCTTACAGGTCACCGCTAATGCCCTGTGACAGGCCCTTGGCCCA,Promoter (<=1kb),10,84526305,84534062,7758,2,Ckap4-201,816,Ckap4-201;Ckap4-202,Ckap4;Ckap4,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,1,1,216197,ENSMUSG00000046841,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
17647,cg08938156,0.0000968,0.00000591,16.37710414,7.23E-44,gain,yes,-0.0000172,0.00001,-1.712714379,0.087765001,neg,ns,0.011365238,0.002942747,3.862118002,0.000136864,pos,ns,3.863712267,-0.000157357,0.000101201,-1.554902837,0.1209895,neg,ns,0.106164634,Zic1,Zic1_fiveUTR,9,91365698,91365747,91365746,91365747,50,+,TGTCTTTTGCGGTTTATCTTCCTGGGGAGAAACTTTCACCTCCTCAGCCG,Promoter (<=1kb),9,91358058,91365768,7711,2,Zic1-201,21,Zic1-201;Zic1-202;Zic1-203;Zic4-208;Zic4-206;Zic4-207;Zic4-211;Zic4-204;Zic4-203,Zic1;Zic1;Zic1;Zic4;Zic4;Zic4;Zic4;Zic4;Zic4,0;0;-2644;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,10,22771,ENSMUSG00000032368,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
15620,cg17531848,-0.0000479,0.0000123,-3.876005617,0.000129628,loss,ns,-0.0000359,0.000021,-1.712622502,0.087781937,neg,ns,-0.004019943,0.006146292,-0.654043597,0.513568606,neg,ns,0.289401533,0.00000519,0.00021137,0.024537492,0.980439665,pos,ns,0.624440909,Nfib,Nfib_Intron,4,82304686,82304735,82304734,82304735,50,-,AAGTTCAATCTGGAATTACATCATGTCTGGTTTCTCCTGGTTACCAGACG,"Intron (Nfib-201/Nfib, intron 11 of 11)",4,82290173,82505308,215136,2,Nfib-201,200573,Nfib-201;Nfib-203;Nfib-202;Nfib-205;Nfib-206;Nfib-204,Nfib;Nfib;Nfib;Nfib;Nfib;Nfib,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,66,18028,ENSMUSG00000008575,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15266,cg15996281,0.0000441,0.00000601,7.339788623,1.89E-12,gain,yes,-0.0000175,0.0000102,-1.712361681,0.087830029,neg,ns,-0.005795493,0.002990674,-1.937855105,0.053548789,neg,ns,1.271250349,0.000396947,0.000102849,3.8595159,0.000138261,pos,ns,0.779695818,Zfp36l1,Zfp36l1_Intron,12,80062792,80062841,80062792,80062793,50,-,CGCCCAGGGTTCAAGTCTCCAAGGAGTTGCTGGGGCCTCTATTTAGCCTG,"Intron (Gm36660-201/Gm36660-201, intron 1 of 1)",12,80108756,80112994,4239,2,Zfp36l1-204,50202,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,8,12192,ENSMUSG00000021127,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
23223,cg13884229,0.0000131,0.0000234,0.56104918,0.575169322,gain,ns,0.0000681,0.0000397,1.712335507,0.087834856,pos,ns,0.005711328,0.011644458,0.490476027,0.624144068,pos,ns,0.204715153,0.000131263,0.000400452,0.32778629,0.743294517,pos,ns,0.911383584,Eri3,Eri3_Promoter,4,117546416,117546465,117546416,117546417,50,+,CGCCATTCGTTCCCAAGCATGGCAGCTTTATAGGCACTTGTAGGCCTGCA,Promoter (3-4kb),4,117550365,117674297,123933,1,Eri3-201,-3900,Eri3-201,Eri3,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,97,140546,ENSMUSG00000033423,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14872,cg20302026,0.00000944,0.00000472,1.998780771,0.046504956,gain,ns,-0.0000137,0.00000803,-1.712105189,0.087877343,neg,ns,-0.001345359,0.002351359,-0.572162182,0.567626782,neg,ns,0.245937122,-0.000182228,0.0000809,-2.25353913,0.024923658,neg,ns,0.802680399,Phf12,Phf12_Exon,11,78029405,78029454,78029453,78029454,50,-,CTGCAATTGCAAAGCCAGCAGCTCGAGCTTGATTGGGGGCAGTGGGGCCG,"Exon (Phf12-201/Phf12, exon 15 of 15)",11,77982802,78030539,47738,1,Phf12-201,46603,Dhrs13-201;Dhrs13-204;Dhrs13-203;Dhrs13-202;Phf12-202;Phf12-201;Phf12-207;Phf12-206;Phf12-208;Phf12-205;Phf12-203;Phf12-204,Dhrs13;Dhrs13;Dhrs13;Dhrs13;Phf12;Phf12;Phf12;Phf12;Phf12;Phf12;Phf12;Phf12,-2826;-2895;-2898;-2905;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,14,27,268448,ENSMUSG00000037791,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19168,cg19615998,-0.0000105,0.0000058,-1.807771145,0.071611265,loss,ns,-0.0000169,0.00000985,-1.712010448,0.087894825,neg,ns,-0.004229487,0.002886822,-1.465101221,0.143906753,neg,ns,0.841918826,-0.0000169,0.0000993,-0.170516041,0.864715554,neg,ns,0.781989951,Thra,Thra_fiveUTR,11,98753551,98753600,98753551,98753552,50,-,CGTGCTGGAGGGCATCCTGGATGGAATTGAAGTGAATGGAACAGAAGCCA,Promoter (<=1kb),11,98753586,98768403,14818,1,Thra-203,0,Thra-205;Thra-209;Thra-204;Thra-207;Thra-201;Thra-202;Thra-208;Thra-206;Thra-203,Thra;Thra;Thra;Thra;Thra;Thra;Thra;Thra;Thra,12913;0;12647;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,TRUE,FALSE,fiveUTR,1,18,21833,ENSMUSG00000058756,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
4453,cg08129342,0.000000077,0.00000438,0.017602023,0.985967666,gain,ns,-0.0000127,0.00000744,-1.711735936,0.087945494,neg,ns,-0.00094723,0.002178561,-0.434796056,0.664012982,neg,ns,0.17782343,-0.000106451,0.0000749,-1.420847273,0.15636623,neg,ns,0.922486721,Epha7,Epha7_Exon,4,28947553,28947602,28947601,28947602,50,-,CATTGACCCTGAAACCTATGAGGACCCAAATAGAGCTGTCCATCAATTCG,"Exon (Epha7-201/Epha7, exon 10 of 17)",4,28813131,28967499,154369,1,Epha7-201,134422,Epha7-202;Epha7-201;Epha7-204;Epha7-203;Epha7-205;Epha7-206,Epha7;Epha7;Epha7;Epha7;Epha7;Epha7,0;0;0;0;75712;75629,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,5,13841,ENSMUSG00000028289,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8901,cg23446650,0.0000209,0.00000264,7.935915811,3.85E-14,gain,yes,-0.00000767,0.00000448,-1.711520175,0.087985336,neg,ns,0.002109328,0.001312082,1.607619235,0.108936579,pos,ns,0.962826268,-0.00000181,0.0000451,-0.040031008,0.968094174,neg,ns,0.035206539,Helt,Helt_fiveUTR,8,46294619,46294668,46294619,46294620,50,+,CGTTTTAAAGCCTGTCCAGAGTCATTAAAGTAATTAAGTAAGCCTTTAAT,Promoter (<=1kb),8,46292039,46294671,2633,2,Helt-201,3,Helt-201;Helt-202;Helt-203,Helt;Helt;Helt,0;-630;-1284,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,7,22,234219,ENSMUSG00000047171,conserved gene but different region,8,46294426,46294620,195,*,195,22,0.666666667,1.016346837,0.112820513,2.64E-18,CpGisland,TRUE,U13,Hc-P
16235,cg01034352,-0.0000358,0.00000786,-4.548629839,0.00000776,loss,ns,-0.0000229,0.0000134,-1.711419111,0.088004003,neg,ns,-0.005179961,0.003913879,-1.323485131,0.18664932,neg,ns,0.728973589,0.0000268,0.000134598,0.199213917,0.842226013,pos,ns,0.901124735,Bnc2,Bnc2_Intron,4,84634770,84634819,84634770,84634771,50,-,CGAGGGACACAAATCCCCTGATGGAACTGAATGCATTCCAAGCTCCCCGA,"Intron (Bnc2-201/Bnc2, intron 1 of 7)",4,84275095,84675034,399940,2,Bnc2-201,40215,Bnc2-201;Bnc2-202;Bnc2-214;Bnc2-215;Bnc2-206;Bnc2-211;Bnc2-217;Bnc2-207;Bnc2-203;Bnc2-209;Bnc2-204;Bnc2-210,Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,91,242509,ENSMUSG00000028487,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8035,cg13756768,-0.000121957,0.0000435,-2.804482893,0.005357843,loss,ns,0.00012643,0.0000739,1.71133295,0.08801992,pos,ns,-0.027461539,0.02164374,-1.268798252,0.205464901,neg,ns,0.687262356,0.002029223,0.000744326,2.72625393,0.006770196,pos,ns,0.385694669,Pax2,Pax2_Intergenic_upstream,19,44699053,44699102,44699053,44699054,50,+,CGGCGCTGCCATTCCCGTCTGATAATCCGGCCTGCCATAAAATTAGACTA,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-56943,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,19,44698991,44699081,91,*,91,9,0.648351648,0.94137931,0.098901099,0.000000407,CpGisland,TRUE,U13,Hc-P
25079,cg02866176,-0.00000814,0.00000606,-1.344550041,0.179753564,loss,ns,0.0000176,0.0000103,1.7112301,0.088038923,pos,ns,-0.000653097,0.003014862,-0.216625748,0.828642505,neg,ns,0.081632794,-0.000036,0.000103681,-0.347095464,0.728755115,neg,ns,0.814118657,Nfasc,Nfasc_Exon,1,132582997,132583046,132583045,132583046,50,+,GTACTGGTCATAAAGGTGATGACGGTACTGCTGATGCCCTCGTTGTCCCG,"Exon (Nfasc-202/Nfasc, exon 27 of 30)",1,132564690,132741757,177068,2,Nfasc-202,158711,Nfasc-202;Nfasc-201;Nfasc-207;Nfasc-203;Nfasc-205;Nfasc-204,Nfasc;Nfasc;Nfasc;Nfasc;Nfasc;Nfasc,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,10,269116,ENSMUSG00000026442,conserved gene and region,1,132583019,132583077,59,*,59,7,0.610169492,1.311111111,0.118644068,0.00000415,CpGisland,TRUE,U11,Tr-P
16992,cg01163805,-0.000000509,0.00000383,-0.132778418,0.894454768,loss,ns,0.0000111,0.00000651,1.711053296,0.088071598,pos,ns,0.00473877,0.001906762,2.485244686,0.013473309,pos,ns,1.870525735,-0.000127663,0.0000656,-1.946866,0.052453737,neg,ns,0.922803875,Zfp423,Zfp423_Exon,8,87780806,87780855,87780854,87780855,50,+,GGACACATGTAGTGCTTGGCAGGGCCCCGGTGCGTCTGCAGGTGCTCCCG,"Exon (Zfp423-203/Zfp423, exon 2 of 6)",8,87661810,87804439,142630,2,Zfp423-203,23584,Zfp423-203;Zfp423-202;Zfp423-201;Zfp423-207;Zfp423-206;Zfp423-205;Zfp423-204,Zfp423;Zfp423;Zfp423;Zfp423;Zfp423;Zfp423;Zfp423,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,53,94187,ENSMUSG00000045333,conserved gene and region,8,87780719,87780892,174,*,174,13,0.632183908,0.756774841,0.074712644,1.25E-08,CpGisland,TRUE,U15,NS
24111,cg08041259,0.000008,0.00000535,1.496340913,0.135582216,gain,ns,-0.0000155,0.00000909,-1.711019016,0.088077934,neg,ns,-0.00360385,0.002661637,-1.353997337,0.176723455,neg,ns,0.752705807,0.0000121,0.0000915,0.132277152,0.894850892,pos,ns,0.935446439,Prkcb,Prkcb_Exon,7,122627635,122627684,122627683,122627684,50,+,TCTTTTCTTCCCCTCTCATAGTGTGGGCGAAATGCTGAAAACTTCGACCG,"Exon (Prkcb-205/Prkcb, exon 17 of 18)",7,122288751,122634399,345649,1,Prkcb-205,338884,Prkcb-205;Prkcb-202;Prkcb-201;Prkcb-203,Prkcb;Prkcb;Prkcb;Prkcb,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,7,18751,ENSMUSG00000052889,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18236,cg22608644,1.44E-08,0.00000223,0.006448319,0.994859169,gain,ns,-0.00000649,0.0000038,-1.710986902,0.088083871,neg,ns,-0.000848556,0.001112001,-0.763089605,0.445990261,neg,ns,0.350674625,0.0000338,0.0000382,0.884890029,0.376901771,pos,ns,0.942237668,Ap3b1,Ap3b1_Intergenic_downstream,13,94574256,94574305,94574304,94574305,50,-,CCCCATTATTCTATAAATCAAATGGAATAGCACTATTGCCAGCTCAGGCG,Distal Intergenic,13,94542303,94547867,5565,1,Ap3b1-202,32002,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,33,55,11774,ENSMUSG00000021686,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1619,cg17832661,-0.000059,0.00000848,-6.958389364,2.05E-11,loss,yes,-0.0000247,0.0000144,-1.710964995,0.08808792,neg,ns,-0.01156729,0.004223059,-2.739078374,0.006517755,neg,ns,2.18590199,0.000134606,0.000145231,0.926845753,0.354727641,pos,ns,0.745150786,Runx1t1,Runx1t1_Exon,4,13875507,13875556,13875507,13875508,50,+,CGTCTGGATACGTGCCAGAGGAGATCTGGAAGAAAGCTGGTAAGAATTGT,"Exon (Runx1t1-201/Runx1t1, exon 9 of 11)",4,13743436,13893649,150214,1,Runx1t1-201,132071,Runx1t1-201;Runx1t1-204;Runx1t1-203;Runx1t1-202,Runx1t1;Runx1t1;Runx1t1;Runx1t1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,24,12395,ENSMUSG00000006586,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12525,cg24337303,-0.00000299,0.00000261,-1.145134538,0.253036735,loss,ns,0.00000758,0.00000443,1.710791538,0.088119991,pos,ns,0.003181394,0.001298693,2.449690284,0.014850867,pos,ns,1.828248198,-0.000120922,0.0000447,-2.707495625,0.00715536,neg,ns,0.93352545,Gm13578,Gm13578_Intergenic_downstream,2,64863665,64863714,64863713,64863714,50,-,AAATAAGTACATATAATGCATTAAAAACTGCTTAAACGCCCATTTAACCG,Distal Intergenic,2,64867999,64868588,590,2,Gm13578-201,4923,Gm13578-201,Gm13578,4874,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,10,667291,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4111,cg01513357,0.00000289,0.00000793,0.365196236,0.715213962,gain,ns,0.000023,0.0000135,1.710464224,0.088180535,pos,ns,0.013439472,0.003945293,3.406457613,0.000744897,pos,ns,3.127904027,-0.00045863,0.000135678,-3.380273197,0.000816795,neg,ns,0.829493253,Gm12072,Gm12072_Intergenic_upstream,11,26815223,26815272,26815271,26815272,50,+,TTCAGGAAATCTTGGAGAGGCAGCAGAAGCCTCCTTATATAGCTCATACG,Distal Intergenic,11,26832804,26845457,12654,1,Gm12072-201,-17532,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,7,666270,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23161,cg20036829,0.000087,0.0000109,8.000893239,2.49E-14,gain,yes,-0.0000316,0.0000185,-1.710406405,0.088191233,neg,ns,0.015237435,0.005410438,2.816303421,0.005169405,pos,ns,2.286559423,-0.000449137,0.000186065,-2.41387927,0.016363005,neg,ns,0.224046661,Rnf220,Rnf220_Intron,4,117373646,117373695,117373694,117373695,50,-,CAATAGAAGGCCCCAGGCCTGCTGAGTTCTCCATAATAAAGCCACCAACG,"Intron (Rnf220-201/Rnf220, intron 2 of 14)",4,117271463,117497052,225590,2,Rnf220-201,123357,Rnf220-201;Rnf220-202;Rnf220-207,Rnf220;Rnf220;Rnf220,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1183,cg16591820,-0.0000025,0.00000678,-0.368134983,0.713023832,loss,ns,0.0000197,0.0000115,1.709989228,0.088268455,pos,ns,0.004665157,0.003376822,1.381522984,0.168113088,pos,ns,0.774398473,-0.0000112,0.000116129,-0.096524426,0.923166447,neg,ns,0.459491278,Tex29,Tex29_Intergenic_downstream,8,12000383,12000432,12000383,12000384,50,+,CGCACACAGAGGGGAAAAAAATCAGGCTGTTGTCTTGCAAGTGTTACTTA,Distal Intergenic,8,11842061,11855757,13697,1,Tex29-202,158322,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,4,75528,ENSMUSG00000031512,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7950,cg06656072,-0.0000159,0.0000116,-1.368078605,0.172278277,loss,ns,0.0000337,0.0000197,1.709965005,0.088272941,pos,ns,0.006774428,0.005771084,1.173857186,0.24135327,pos,ns,0.617346813,-0.000120197,0.000198467,-0.605629342,0.545204051,neg,ns,0.581194313,Pax2,Pax2_Intergenic_upstream,19,44663146,44663195,44663194,44663195,50,+,TTGAATTATGCAAATTCGCGGTGCACATAATGTTCTCTGACATGTGCCCG,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-92850,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19532,cg00851842,-0.0000055,0.00000208,-2.641980088,0.008660499,loss,ns,0.00000605,0.00000354,1.709893963,0.088286097,pos,ns,-0.000134426,0.001036532,-0.129688307,0.896897142,neg,ns,0.04725736,-0.00000509,0.0000356,-0.142746913,0.8865828,neg,ns,0.944901181,Pja1,Pja1_Intergenic_upstream,X,99578736,99578785,99578736,99578737,50,+,CGGTTAAGAAGTTTTTTCCTGCTACTCAGCGTTAGTGCTTAAAGTGCAGT,Distal Intergenic,20,99465734,99471273,5540,2,Pja1-203,-107463,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,17,18744,ENSMUSG00000034403,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23325,cg18937321,-0.00000391,0.0000015,-2.613962167,0.009386795,loss,ns,0.00000434,0.00000254,1.709471539,0.088364359,pos,ns,0.001536084,0.000744129,2.064271776,0.039823614,pos,ns,1.399859331,-0.0000302,0.0000256,-1.179148633,0.239243185,neg,ns,0.054871832,Slc6a9,Slc6a9_fiveUTR,4,117835382,117835431,117835430,117835431,50,+,GAGCCTCGGGAGGCTGATGCAACTTTCCCTTTAAGAAAGCCACCTGGGCG,Promoter (<=1kb),4,117835397,117868337,32941,1,Slc6a9-210,0,Slc6a9-202;Slc6a9-208;Slc6a9-201;Slc6a9-207;Slc6a9-210;Slc6a9-206,Slc6a9;Slc6a9;Slc6a9;Slc6a9;Slc6a9;Slc6a9,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,8,14664,ENSMUSG00000028542,conserved gene and region,4,117835430,117835463,34,*,34,6,0.823529412,1.046153846,0.176470588,0.00000267,CpGisland,TRUE,U1,Pr-A
27045,cg08984427,-0.000000301,0.00000167,-0.179633171,0.857557919,loss,ns,0.00000486,0.00000284,1.709442557,0.08836973,pos,ns,0.002188789,0.000832974,2.627680907,0.009024612,pos,ns,2.044571448,-0.0000886,0.0000286,-3.091240348,0.002174217,neg,ns,0.959248357,Ralgps2,Ralgps2_threeUTR,1,156869509,156869558,156869557,156869558,50,-,TCTTTACTCATTACATATTCTAATTTTTCAAAGGTAGTTTTGTCTTTTCG,3' UTR,1,156804166,156939602,135437,2,Ralgps2-204,70044,Ralgps2-204;Ralgps2-201;Ralgps2-215;Ralgps2-203;Ralgps2-202;Ralgps2-214;Ralgps2-205;Ralgps2-209;Ralgps2-211;Ralgps2-207,Ralgps2;Ralgps2;Ralgps2;Ralgps2;Ralgps2;Ralgps2;Ralgps2;Ralgps2;Ralgps2;Ralgps2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,3,78255,ENSMUSG00000026594,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10549,cg15872386,0.0000019,0.00000381,0.500192758,0.617294242,gain,ns,-0.0000111,0.00000647,-1.709430965,0.088371879,neg,ns,-0.004451525,0.001894215,-2.350063586,0.01939694,neg,ns,1.712266776,0.0000287,0.0000651,0.440095777,0.660174424,pos,ns,0.900708564,Trpc4,Trpc4_Exon,3,54266361,54266410,54266409,54266410,50,-,TGAACAGGCAAGGTCCACCACCAACCATCGTCGAGTGGATGATATTACCG,"Exon (Trpc4-201/Trpc4, exon 4 of 11)",3,54156057,54318471,162415,1,Trpc4-201,110304,Trpc4-201;Trpc4-204;Trpc4-205;Trpc4-206,Trpc4;Trpc4;Trpc4;Trpc4,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,22066,ENSMUSG00000027748,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14694,cg15793862,0.00000885,0.0000037,2.390278272,0.017432415,gain,ns,-0.0000108,0.00000629,-1.709383492,0.088380678,neg,ns,-0.000107016,0.001842982,-0.058066794,0.953732835,neg,ns,0.020573265,-0.0000264,0.0000634,-0.417119067,0.676880027,neg,ns,0.930563056,Adarb1,Adarb1_threeUTR,10,77303215,77303264,77303263,77303264,50,-,CCTCTATGTTGGAGATCCGCTGGTACATGGCCCTGGAAAGGTGGTCCCCG,3' UTR,10,77290726,77418265,127540,2,Adarb1-201,115001,Adarb1-201;Adarb1-202;Adarb1-203;Adarb1-205;Adarb1-206;Adarb1-204,Adarb1;Adarb1;Adarb1;Adarb1;Adarb1;Adarb1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,110532,ENSMUSG00000020262,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9865,cg20705693,0.00000119,0.000000602,1.976159124,0.049023042,gain,ns,0.00000175,0.00000102,1.709268054,0.088402078,pos,ns,0.000770152,0.000299481,2.571619609,0.010588242,pos,ns,1.975176123,-0.0000173,0.0000103,-1.681809168,0.09361288,neg,ns,0.009147507,Nfe2l3,Nfe2l3_Intergenic_upstream,6,51270901,51270950,51270949,51270950,50,+,CATCTTGACTTTTGCCGACGTGGAAATTTTGGGTTTGGAGACGACCTGCG,Distal Intergenic,6,51432670,51458768,26099,1,Nfe2l3-201,-161720,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,5,18025,ENSMUSG00000029832,mapped to different genes,6,51270266,51271400,1135,*,1135,96,0.676651982,0.740217391,0.084581498,2.21E-65,CpGisland,TRUE,U1,Pr-A
15924,cg01972445,0.0000602,0.00000675,8.916870029,4.23E-17,gain,yes,-0.0000196,0.0000115,-1.709040757,0.088444227,neg,ns,0.009138565,0.003357571,2.721778344,0.006860353,pos,ns,2.163653538,-0.000391924,0.000115467,-3.394264409,0.000777609,neg,ns,0.068516794,Tlnrd1,Tlnrd1_Exon,7,83883056,83883105,83883056,83883057,50,-,CGCTCGACAGCAGCAGCAGGTCAGCCACCAGCTGCATCTTGCCCTTGCAG,"Exon (Tlnrd1-201/Tlnrd1, exon 1 of 1)",7,83879873,83884305,4433,2,Tlnrd1-201,1200,Mesd-203;Tlnrd1-201,Mesd;Tlnrd1,-1361;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,80889,ENSMUSG00000070462,conserved gene and region,7,83882225,83883078,854,*,854,70,0.653395785,0.769171385,0.081967213,6.74E-47,CpGisland,TRUE,U1,Pr-A
7055,cg15216075,0.000018,0.00000683,2.632925131,0.008889508,gain,ns,0.0000198,0.0000116,1.708989235,0.088453783,pos,ns,0.01032893,0.003398248,3.039486381,0.002571715,pos,ns,2.589777099,-0.0000936,0.000116865,-0.801196014,0.423631831,neg,ns,0.098103262,Tfap2a,Tfap2a_Exon,13,40725118,40725167,40725166,40725167,50,+,AAATGGCTTACCTTTCTTAATTACAGTTTGATCTGGGATGTTAATACCCG,"Exon (Gm47061-201/Gm47061-201, exon 1 of 1)",13,40715302,40730443,15142,2,Tfap2a-201,5276,Tfap2a-201;Tfap2a-202;Tfap2a-205;Tfap2a-203;Tfap2a-209;Tfap2a-208;Tfap2a-206;Tfap2a-204;Tfap2a-207,Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,13,57,21418,ENSMUSG00000021359,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
17624,cg21967337,-0.0000242,0.00000471,-5.148653157,0.000000467,loss,yes,0.0000137,0.000008,1.70881952,0.088485267,pos,ns,-0.004683492,0.002344092,-1.997998486,0.046590172,neg,ns,1.331705686,0.0000305,0.0000806,0.378155893,0.705573602,pos,ns,0.890137374,Gm4130,Gm4130_Intergenic_upstream,13,91296102,91296151,91296102,91296103,50,+,CGCCAGACCTTCATTTAGCATTTTAATAAACTTCCTGGGCCAAGGAGTAA,Distal Intergenic,13,91261449,91262418,970,2,Gm4130-201,-33684,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,100042959,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23426,cg06134581,-0.0000208,0.0000157,-1.322819714,0.186870305,loss,ns,0.0000457,0.0000267,1.708771588,0.088494161,pos,ns,0.00355523,0.007829858,0.454060643,0.650102913,pos,ns,0.187017888,0.000171057,0.000269268,0.635265995,0.525723572,pos,ns,0.77982289,Gm5672,Gm5672_Promoter,14,118385166,118385215,118385214,118385215,50,-,TTAATTTTTTCGCCCTGAAGACAGTGATTTCCATATATAGAGTGACCCCG,Promoter (9-10kb),14,118375261,118376194,934,2,Gm5672-201,-9021,NA,NA,NA,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,1,9,435422,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18899,cg12821343,-0.00000169,0.00000221,-0.764853615,0.444940566,loss,ns,0.00000642,0.00000376,1.708738974,0.088500213,pos,ns,0.001525923,0.001100892,1.38607901,0.166718963,pos,ns,0.778014999,-0.0000952,0.0000379,-2.514830315,0.01241477,neg,ns,0.953422416,Dach1,Dach1_Intron,14,97868322,97868371,97868322,97868323,50,+,CGCTCACTGCACAAACCCATTTGGAACAGGCGCGAAGGTGAAAAGGATAA,"Intron (Dach1-201/Dach1, intron 6 of 10)",14,97786853,98169543,382691,2,Dach1-201,301172,Dach1-201;Dach1-202;Dach1-203,Dach1;Dach1;Dach1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,76,13134,ENSMUSG00000055639,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8159,cg21669515,-0.0000244,0.00000423,-5.758440371,2.04E-08,loss,yes,0.0000123,0.00000719,1.708442087,0.088555319,pos,ns,-0.002852344,0.002107652,-1.353327945,0.176936887,neg,ns,0.752181617,0.000133827,0.0000725,1.846345821,0.065795121,pos,ns,0.950270511,Gtdc1,Gtdc1_Intron,2,44804710,44804759,44804758,44804759,50,+,GGAAATGCAAATCATGCAAACCACCCTCATGATGGCTACGTACAGTGGCG,"Intron (Gtdc1-203/Gtdc1, intron 3 of 10)",2,44564412,44861622,297211,2,Gtdc1-203,56863,Gtdc1-203;Gtdc1-205;Gtdc1-210;Gtdc1-204;Gtdc1-211;Gtdc1-212;Gtdc1-213;Gtdc1-202;Gtdc1-209;Gtdc1-206,Gtdc1;Gtdc1;Gtdc1;Gtdc1;Gtdc1;Gtdc1;Gtdc1;Gtdc1;Gtdc1;Gtdc1,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,43,227835,ENSMUSG00000036890,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18516,cg13428642,0.0000335,0.00000334,10.02218251,1.16E-20,gain,yes,-0.0000097,0.00000568,-1.708414253,0.088560487,neg,ns,0.00185604,0.001664198,1.115276323,0.265595851,pos,ns,0.575778714,0.0000247,0.0000572,0.431765613,0.666211911,pos,ns,0.073651494,Hoxb9,Hoxb9_Promoter,11,96271187,96271236,96271235,96271236,50,-,GATAGCACATTGCATCAGCATAAAACAATCCATCCTCGATATGGAGTGCG,Promoter (<=1kb),11,96271457,96276595,5139,1,Hoxb9-201,-270,Hoxb9-201;Hoxb9-202,Hoxb9;Hoxb9,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,7,22,15417,ENSMUSG00000020875,mapped to different genes,11,96271235,96271356,122,*,122,12,0.573770492,1.195102041,0.098360656,2.23E-09,CpGisland,TRUE,U13,Hc-P
2574,cg08430237,-0.0000169,0.00000602,-2.805164228,0.005346815,loss,ns,0.0000175,0.0000102,1.708250775,0.088590844,pos,ns,-0.000971141,0.002995249,-0.324227167,0.745984711,neg,ns,0.127270073,-0.0000312,0.000103006,-0.303331704,0.761840554,neg,ns,0.853914901,Rbm10,Rbm10_Exon,X,20637612,20637661,20637660,20637661,50,-,ATCGTCATGCTGAGGATGCTGCCACAGGCAGCCACTGAGGATGACGTACG,"Exon (Rbm10-205/Rbm10, exon 4 of 24)",20,20617503,20650888,33386,1,Rbm10-205,20109,Rbm10-205;Rbm10-204;Rbm10-203;Rbm10-206;Rbm10-201;Rbm10-202;Rbm10-207,Rbm10;Rbm10;Rbm10;Rbm10;Rbm10;Rbm10;Rbm10,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,14,236732,ENSMUSG00000031060,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9650,cg23277670,0.000000349,0.000000948,0.368159887,0.713005282,gain,ns,-0.00000275,0.00000161,-1.708056266,0.088626974,neg,ns,0.0000886,0.000472069,0.187686124,0.851245496,pos,ns,0.069945173,-0.00000949,0.0000162,-0.584450348,0.559342445,neg,ns,0.97198436,Htatip2,Htatip2_Intergenic_upstream,7,49699095,49699144,49699095,49699096,50,+,CGGAACATATGGTTTCTTAATTCAAGTTAAAATGTCTGAACCCTGTTGCA,Distal Intergenic,7,49759115,49762759,3645,1,Htatip2-203,-59971,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,7,53415,ENSMUSG00000039745,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2149,cg15927093,-0.0000349,0.00000996,-3.507329915,0.000519542,loss,ns,0.0000289,0.0000169,1.708051103,0.088627933,pos,ns,-0.000839921,0.004959405,-0.169359161,0.865624603,neg,ns,0.062670409,-0.000321714,0.000170554,-1.886292311,0.060190128,neg,ns,0.80988244,Mmp16,Mmp16_Exon,4,18093354,18093403,18093402,18093403,50,-,AACAACAGGGTGATGGATGGATACCCAATGCAAATTACTTACTTCTGGCG,"Exon (Mmp16-206/Mmp16, exon 8 of 12)",4,17852893,18117457,264565,1,Mmp16-206,240461,Mmp16-206;Mmp16-201;Mmp16-203,Mmp16;Mmp16;Mmp16,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,6,17389,ENSMUSG00000028226,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26824,cg13492133,-0.0000112,0.00000429,-2.607059664,0.009573907,loss,ns,-0.0000125,0.00000729,-1.707963034,0.088644296,neg,ns,-0.003618759,0.002135782,-1.694348145,0.091203463,neg,ns,1.039988674,-0.0000918,0.0000734,-1.249742995,0.212336129,neg,ns,0.871228749,Smg7,Smg7_Exon,1,152843302,152843351,152843350,152843351,50,-,AATCAGCTCTTCCTCTTCCTCCAAGGCAGCCAGACTCTTTAACAGGTCCG,"Exon (Smg7-201/Smg7, exon 18 of 23)",1,152836995,152902622,65628,2,Smg7-202,59271,Smg7-202;Smg7-201;Smg7-203;Smg7-204;Smg7-205;Smg7-206,Smg7;Smg7;Smg7;Smg7;Smg7;Smg7,0;0;0;0;0;5569,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,7,226517,ENSMUSG00000042772,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19363,cg21477760,0.000102595,0.0000228,4.497034803,0.00000975,gain,ns,-0.0000662,0.0000388,-1.707637567,0.088704788,neg,ns,0.019991373,0.011354717,1.760622726,0.079288294,pos,ns,1.100790928,-0.000459956,0.000390488,-1.177901651,0.239739266,neg,ns,0.414469825,Foxp1,Foxp1_Intron,6,99101663,99101712,99101663,99101664,50,+,CGCCAGCTTAACAACAGATGGCTAGAAAACTTTCATTATGTTGCACAGGA,"Intron (Foxp1-206/Foxp1, intron 3 of 17)",6,98925338,99266515,341178,2,Foxp1-206,164803,Foxp1-206;Foxp1-204;Foxp1-220;Foxp1-201;Foxp1-205;Foxp1-207;Foxp1-208;Foxp1-226;Foxp1-228;Foxp1-221;Foxp1-222;Foxp1-223,Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,87,108655,ENSMUSG00000030067,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24581,cg00505445,-0.0000299,0.00000454,-6.589605654,1.89E-10,loss,yes,0.0000132,0.00000771,1.707591315,0.088713387,pos,ns,-0.004914463,0.002257492,-2.176956777,0.030237992,neg,ns,1.519447057,0.000166592,0.0000776,2.145834195,0.032662461,pos,ns,0.928666156,Ank2,Ank2_Exon,3,127029533,127029582,127029533,127029534,50,-,CGGTTTTTCTTGCAGGCAATGTGCAGTGGAGTAAAACCATTCTGTGCAAA,"Exon (Ank2-208/Ank2, exon 13 of 46)",3,126921614,127409059,487446,2,Ank2-208,379477,Ank2-208;Ank2-207;Ank2-218;Ank2-220;Ank2-203;Ank2-214;Ank2-221;Ank2-217,Ank2;Ank2;Ank2;Ank2;Ank2;Ank2;Ank2;Ank2,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,7,109676,ENSMUSG00000032826,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3087,cg14405497,0.0000562,0.0000102,5.515260391,7.35E-08,gain,yes,0.0000296,0.0000173,1.707565847,0.088718122,pos,ns,0.015317292,0.005072095,3.019914103,0.0027387,pos,ns,2.562455581,-0.000366846,0.000174429,-2.103125891,0.036260516,neg,ns,0.088092612,Slc2a12,Slc2a12_fiveUTR,10,22644971,22645020,22645019,22645020,50,+,GCTGCTTGGAATAGCAACAGCCTGTGTCACCGAAAAGGGCAAAGCCTTCG,Promoter (<=1kb),10,22645011,22704285,59275,1,Slc2a12-201,0,Slc2a12-201;Slc2a12-202,Slc2a12;Slc2a12,0;-3988,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,2,353169,ENSMUSG00000037490,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18706,cg03371633,0.00000133,0.00000219,0.608182997,0.543511434,gain,ns,0.00000634,0.00000371,1.707317455,0.088764317,pos,ns,0.001108434,0.001088137,1.018652493,0.309162296,pos,ns,0.509813477,-0.0000449,0.0000374,-1.200422779,0.230891688,neg,ns,0.951761319,Gm5131,Gm5131_Intergenic_upstream,8,96780574,96780623,96780622,96780623,50,-,GATCATAAATAATCAGTGCAAGTTATTAACTTTTGACAACTGCTCATCCG,Distal Intergenic,8,97163793,97165030,1238,1,Gm5131-201,-383219,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,333331,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10486,cg05332360,-0.0000495,0.00000896,-5.527547047,0.000000069,loss,yes,0.000026,0.0000152,1.707237314,0.088779225,pos,ns,-0.004340379,0.004457418,-0.973742781,0.330943464,neg,ns,0.480246192,-0.0000596,0.00015329,-0.388554734,0.697872277,neg,ns,0.826290198,Npas3,Npas3_Intron,12,53838492,53838541,53838492,53838493,50,+,CGTGCTTCCTTGCTTTTGACAAGATTTGCTGCAGTCTCATGCGACAAAAA,"Intron (Npas3-204/Npas3, intron 4 of 10)",12,53248157,54069532,821376,1,Npas3-204,590335,Npas3-204;Npas3-201;Npas3-203,Npas3;Npas3;Npas3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,83,103,27386,ENSMUSG00000021010,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1332,cg14261840,0.0000454,0.000006,7.56271824,4.51E-13,gain,yes,-0.0000174,0.0000102,-1.706846257,0.088852001,neg,ns,0.003847634,0.002986717,1.288248507,0.19862017,pos,ns,0.70197665,-0.000000966,0.000102713,-0.009408759,0.992499059,neg,ns,0.104179597,Fezf2,Fezf2_Intron,14,12347039,12347088,12347039,12347040,50,+,CGTATCACAACAAACTGCTCAAAGACGCTCCAGCACTTTCAACAGGCCGG,"Intron (Fezf2-202/Fezf2, intron 1 of 5)",14,12343388,12348189,4802,2,Fezf2-202,1101,Fezf2-203;Fezf2-201;Fezf2-202,Fezf2;Fezf2;Fezf2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,45,54713,ENSMUSG00000021743,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
12135,cg22592261,0.00000147,0.00000137,1.06920048,0.285811169,gain,ns,0.00000398,0.00000233,1.706833861,0.088854309,pos,ns,0.00151748,0.000683571,2.219929361,0.027146706,pos,ns,1.566282862,-0.0000261,0.0000235,-1.11159341,0.267174356,neg,ns,0.960040471,Fbxl17,Fbxl17_Intron,17,63076231,63076280,63076231,63076232,50,-,CGCTGGCATTTTCAAATCAAATGAACAGTGTATAAAATTAGTTCTGCATG,"Intron (Fbxl17-201/Fbxl17, intron 8 of 8)",17,63057452,63500017,442566,2,Fbxl17-201,423737,Fbxl17-201;Fbxl17-203;Fbxl17-204;Fbxl17-205,Fbxl17;Fbxl17;Fbxl17;Fbxl17,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,8,50758,ENSMUSG00000023965,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10703,cg04373810,-0.00000194,0.00000103,-1.884370929,0.060450308,loss,ns,-0.00000298,0.00000175,-1.706560925,0.088905132,neg,ns,-0.000570902,0.000512179,-1.11465454,0.265861895,neg,ns,0.575343904,-0.00000353,0.0000176,-0.200559296,0.841174702,neg,ns,0.031624142,Zfp608,Zfp608_Exon,18,54991222,54991271,54991222,54991223,50,-,CGTGAGGATCAAGGGCTCAATTGGTTGTCGTGAGAACAAAAATGGTGACA,"Exon (Gm4221-203/Gm4221-203, exon 2 of 2)",18,54888723,54992555,103833,2,Zfp608-203,1284,Zfp608-201;Zfp608-203,Zfp608;Zfp608,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,32,269023,ENSMUSG00000052713,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
10536,cg01593388,-0.0000302,0.0000154,-1.962642838,0.05058176,loss,ns,0.0000447,0.0000262,1.706252083,0.08896267,pos,ns,-0.006375598,0.007670542,-0.8311796,0.406511909,neg,ns,0.390926727,0.000365047,0.000263789,1.383857192,0.167397736,pos,ns,0.619285249,Npas3,Npas3_Intron,12,54060779,54060828,54060779,54060780,50,+,CGTCTTTAGGACTCTGGCTTGTTCTGGTTTAGAGCAAGATGATTAATGCA,"Intron (Npas3-204/Npas3, intron 8 of 10)",12,53248157,54069532,821376,1,Npas3-204,812622,Npas3-204;Npas3-201;Npas3-203,Npas3;Npas3;Npas3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,83,103,27386,ENSMUSG00000021010,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10115,cg10277837,0.000136735,0.00000721,18.97565116,7.97E-54,gain,yes,-0.0000209,0.0000122,-1.705863979,0.089035017,neg,ns,0.004987805,0.003586421,1.390747441,0.165299519,pos,ns,0.781728409,-0.000125824,0.000123337,-1.020164405,0.308445972,neg,ns,0.084021495,Gm28308,Gm28308_fiveUTR,6,52191674,52191723,52191722,52191723,50,-,CGAGCTCATGGTCATTAATTTGTGAAGTGCAAAAATACTAATTTTTCTCG,5' UTR,6,52163359,52213339,49981,2,Gm28308-201,21616,Gm28308-201;Hoxa3-201;Hoxa4-201,Gm28308;Hoxa3;Hoxa4,0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,21,103,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26161,cg05095283,-0.00000489,0.00000312,-1.564976535,0.118608618,loss,ns,0.00000906,0.00000531,1.70583932,0.089039615,pos,ns,0.000969387,0.001555198,0.623320522,0.533532237,pos,ns,0.272839334,-0.00000513,0.0000535,-0.095911285,0.923653003,neg,ns,0.03481632,Lmo4,Lmo4_fiveUTR,3,144202762,144202811,144202762,144202763,50,-,CGAAACTGGTTTTTCGTATTTTAAGCAGCACCTTTCACATGCCATTGTGG,5' UTR,3,144188530,144205220,16691,2,Lmo4-201,2409,Lmo4-203;Lmo4-201;Lmo4-202;Lmo4-207;Lmo4-208;Lmo4-205;Lmo4-204,Lmo4;Lmo4;Lmo4;Lmo4;Lmo4;Lmo4;Lmo4,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,54,16911,ENSMUSG00000028266,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
16643,cg12656217,-0.000249847,0.0000193,-12.92098814,7.57E-31,loss,yes,0.000056,0.0000329,1.705836323,0.089040174,pos,ns,0.034184632,0.009623986,3.552024331,0.00044169,pos,ns,3.354882007,-0.001036884,0.000330968,-3.132883672,0.001896347,neg,ns,0.709266105,Adamts1,Adamts1_Promoter,16,85805781,85805830,85805829,85805830,50,-,TCCAATCTGTTGTGCACCTGTAGTTCTGGGAAATGATTCTTTTTTAATCG,Promoter (2-3kb),16,85793827,85803113,9287,2,Adamts1-201,-2717,Adamts1-201;Adamts1-202,Adamts1;Adamts1,-2668;-4300,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,1,11504,ENSMUSG00000022893,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24429,cg14301448,0.00000432,0.00000504,0.856515184,0.392374472,gain,ns,0.0000146,0.00000857,1.705809164,0.089045239,pos,ns,0.001200248,0.002510506,0.478090216,0.632922958,pos,ns,0.198649151,0.000139286,0.0000863,1.613299048,0.107697012,pos,ns,0.876070013,Csf3r,Csf3r_Intergenic_upstream,4,125882244,125882293,125882244,125882245,50,-,CGGATACTAATTATAATGACCTGGTGAGTTACAAGACGGTGAAATTGCTT,Distal Intergenic,4,126024550,126044440,19891,1,Csf3r-202,-142306,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,7,12986,ENSMUSG00000028859,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11295,cg05622337,-0.00000998,0.00000465,-2.145165702,0.032716321,loss,ns,0.0000135,0.00000791,1.705780036,0.089050671,pos,ns,-0.002354297,0.00231609,-1.016496155,0.310185849,neg,ns,0.508378019,0.000149338,0.0000797,1.874919142,0.06174388,pos,ns,0.903561263,Rbmx,Rbmx_threeUTR,X,57386106,57386155,57386106,57386107,50,-,CGACTTAGACGGAAAAACTAGTTTGCTTTGCTTACCATCTTTGCTGTTTC,3' UTR,20,57383530,57392981,9452,2,Rbmx-205,6826,Rbmx-205;Rbmx-201;Rbmx-203;Rbmx-202;Rbmx-206;Rbmx-204,Rbmx;Rbmx;Rbmx;Rbmx;Rbmx;Rbmx,0;0;0;0;0;6642,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,6,19655,ENSMUSG00000031134,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9546,cg03820088,0.0000617,0.00000957,6.445294189,4.41E-10,gain,yes,0.0000277,0.0000163,1.705713173,0.089063142,pos,ns,0.014017426,0.004765418,2.941489315,0.003512469,pos,ns,2.45438755,-0.000181959,0.000163882,-1.110304972,0.267728111,neg,ns,0.777906532,Tra2a,Tra2a_threeUTR,6,49252857,49252906,49252905,49252906,50,-,CTTTCTACTTCTCTTCATTCTTCATTGAGTTTTTCATTTTTCATACTTCG,3' UTR,6,49243924,49264010,20087,2,Tra2a-204,11104,Tra2a-204;Tra2a-202;Tra2a-201;Tra2a-205,Tra2a;Tra2a;Tra2a;Tra2a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,5,7,101214,ENSMUSG00000029817,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2529,cg05895577,0.0000065,0.00000665,0.977713364,0.328978471,gain,ns,-0.0000193,0.0000113,-1.705690176,0.089067431,neg,ns,0.005196428,0.003310101,1.569869968,0.11746547,pos,ns,0.930089778,-0.000263184,0.000113834,-2.31199953,0.021432819,neg,ns,0.926309452,Bclaf1,Bclaf1_Intron,10,20327093,20327142,20327093,20327094,50,+,CGATCTGAACAGCTCTTACTTTATATAGAGCTGAAAATGCCCAGTGATGT,"Intron (Bclaf1-202/Bclaf1, intron 6 of 11)",10,20312469,20342501,30033,1,Bclaf1-202,14624,Bclaf1-202;Bclaf1-204;Bclaf1-201;Bclaf1-205;Bclaf1-208;Bclaf1-203;Bclaf1-210;Bclaf1-207;Bclaf1-209,Bclaf1;Bclaf1;Bclaf1;Bclaf1;Bclaf1;Bclaf1;Bclaf1;Bclaf1;Bclaf1,0;0;0;14565;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,7,72567,ENSMUSG00000037608,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1819,cg16251253,-0.00000251,0.00000123,-2.048160114,0.041386417,loss,ns,0.00000355,0.00000208,1.70562278,0.089080003,pos,ns,0.001759552,0.00061034,2.882904384,0.0042157,pos,ns,2.375130277,-0.0000287,0.000021,-1.36580471,0.172990354,neg,ns,0.962671197,Foxp2,Foxp2_Intron,6,15407429,15407478,15407477,15407478,50,+,CATCACTGCACCCTTAACAGCTATCAGTACATGAACACAAGGTGCAACCG,"Intron (Foxp2-207/Foxp2, intron 12 of 18)",6,14901349,15441977,540629,1,Foxp2-207,506080,Foxp2-207;Foxp2-213;Foxp2-205;Foxp2-204;Foxp2-201;Foxp2-209;Foxp2-202;Foxp2-206,Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,38,65,114142,ENSMUSG00000029563,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2427,cg00793748,-0.0000197,0.0000049,-4.02624862,0.0000713,loss,ns,-0.0000142,0.00000833,-1.705613678,0.089081701,neg,ns,-0.004603645,0.002441228,-1.8857908,0.060257949,neg,ns,1.219985656,-0.0000224,0.000084,-0.267278088,0.789432782,neg,ns,0.898095336,Olig3,Olig3_Intergenic_downstream,10,19414869,19414918,19414917,19414918,50,-,TCAAAGACCATCAGCACATCATATTTTCATACCATAAACAGCTCAAGGCG,Distal Intergenic,10,19356533,19358604,2072,1,Olig3-201,58385,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,9,94222,ENSMUSG00000045591,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3364,cg25473687,-0.00000267,0.00000203,-1.314120115,0.189777335,loss,ns,0.00000589,0.00000346,1.705275544,0.089144799,pos,ns,0.002305254,0.00101273,2.276276172,0.023511152,pos,ns,1.6287261,-0.0000852,0.0000348,-2.447700848,0.014931507,neg,ns,0.955617137,Papolg,Papolg_Exon,11,23870764,23870813,23870812,23870813,50,+,CCTGGGAATGACTGGGGATTCACATGGGCAAGAGTAATAAATTCATTCCG,"Exon (Papolg-201/Papolg, exon 14 of 22)",11,23862646,23895253,32608,2,Papolg-201,24440,Papolg-201;Papolg-203;Papolg-204;Papolg-202,Papolg;Papolg;Papolg;Papolg,0;-2294;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,9,216578,ENSMUSG00000020273,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2477,cg14907557,0.000000955,0.00000117,0.814277921,0.416110809,gain,ns,0.0000034,0.00000199,1.705239967,0.08915144,pos,ns,0.000637441,0.000583953,1.091596348,0.275858221,pos,ns,0.559314069,-0.0000108,0.0000201,-0.536812108,0.591782453,neg,ns,0.021701751,Slc35d3,Slc35d3_Exon,10,19850685,19850734,19850733,19850734,50,+,AGGGGCAGGCAGCGCTTGAAGACCACGTACATGGGCAGGCTGAGGCCGCG,Promoter (<=1kb),10,19847916,19851459,3544,2,Slc35d3-201,725,Pex7-201;Slc35d3-201,Pex7;Slc35d3,56955;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,76157,ENSMUSG00000050473,conserved gene and region,10,19850510,19850870,361,*,361,34,0.689750693,0.806015235,0.094182826,3.19E-25,CpGisland,TRUE,U3,Pr-B
17701,cg08305457,0.0000178,0.00000648,2.751673117,0.006278146,gain,ns,0.0000188,0.000011,1.705210022,0.08915703,pos,ns,0.003292142,0.003224254,1.021055426,0.308024336,pos,ns,0.51141497,-0.0000742,0.000110882,-0.668734932,0.504162244,neg,ns,0.112001632,Zic4,Zic4_Intergenic_downstream,9,91394441,91394490,91394441,91394442,50,-,CGGCTGAGGGGGCTTTTTTCCAATGTAAATCAAGCGCTTTAGTTATTAGG,Distal Intergenic,9,91382410,91388044,5635,1,Zic4-202,12080,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,55,22774,ENSMUSG00000036972,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
20647,cg21542900,-0.00000655,0.00000677,-0.96758584,0.334005514,loss,ns,0.0000196,0.0000115,1.705154561,0.089167384,pos,ns,-0.001618564,0.003368519,-0.480497035,0.631212914,neg,ns,0.199824124,-0.0000838,0.000115843,-0.723677703,0.469809346,neg,ns,0.530806716,Pou4f1,Pou4f1_Intron,14,104298188,104298237,104298188,104298189,50,-,CGAGCCAGTTTAGTGTAGCTTCAAGAGGAAACCACCCATAGGGGTTTCCT,"Intron (D130079A08Rik-202/D130079A08Rik-202, intron 2 of 4)",14,104463973,104465365,1393,2,Pou4f1-202,167177,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,31,18996,ENSMUSG00000048349,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4859,cg14399158,-0.00000362,0.00000379,-0.9573007,0.339161469,loss,ns,-0.000011,0.00000643,-1.705150658,0.089168112,neg,ns,-0.000248102,0.001884532,-0.131651585,0.895345283,neg,ns,0.04800945,-0.0000994,0.0000648,-1.534440357,0.125941286,neg,ns,0.944707642,Zbtb44,Zbtb44_Exon,9,31066709,31066758,31066757,31066758,50,+,TACTCGCTAAAGATGCATCGCCTAAAGCATGAAGGTAAACGCTGTTTCCG,"Exon (Zbtb44-205/Zbtb44, exon 5 of 6)",9,31030644,31070233,39590,1,Zbtb44-205,36065,Zbtb44-205;Zbtb44-201;Zbtb44-206;Zbtb44-202;Zbtb44-204,Zbtb44;Zbtb44;Zbtb44;Zbtb44;Zbtb44,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,15,235132,ENSMUSG00000047412,conserved gene and region,9,31066713,31066901,189,*,189,12,0.486772487,1.07641196,0.063492064,0.00000032,CpGisland,TRUE,U10,Tr-S
25171,cg00298032,-0.00000644,0.0000068,-0.947595961,0.34407326,loss,ns,-0.0000197,0.0000115,-1.705075308,0.089182181,neg,ns,0.002773984,0.003383487,0.819859429,0.412926156,pos,ns,0.384127607,-0.0000807,0.000116358,-0.693840836,0.48830161,neg,ns,0.867302861,Plekha6,Plekha6_Exon,1,133294679,133294728,133294727,133294728,50,+,AGGCCTCCCGCAGGGGCCGCATGCTGTCTGGTGAGAGGGGCTGGGCCTCG,"Exon (Plekha6-204/Plekha6, exon 21 of 23)",1,133181321,133301219,119899,1,Plekha6-204,113358,Plekha6-204;Plekha6-202;Plekha6-201;Plekha6-203;Plekha6-207;Plekha6-210;Plekha6-208,Plekha6;Plekha6;Plekha6;Plekha6;Plekha6;Plekha6;Plekha6,0;0;0;0;0;2929;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,7,240753,ENSMUSG00000041757,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7275,cg11547453,0.000000817,0.00000179,0.45582955,0.648831693,gain,ns,-0.00000519,0.00000304,-1.704900691,0.089214791,neg,ns,0.000948696,0.000891634,1.063997451,0.288157931,pos,ns,0.540369423,-0.0000444,0.0000307,-1.448772935,0.148411744,neg,ns,0.951699215,Zdhhc16,Zdhhc16_threeUTR,19,41939662,41939711,41939710,41939711,50,+,ATGACTCTGGGCTGTGTCTACTGCAGCTATGGAAGTTGGGACCTTTTCCG,3' UTR,19,41933490,41944104,10615,1,Zdhhc16-201,6172,Mms19-209;Mms19-217;Mms19-216;Mms19-202;Mms19-203;Mms19-204;Mms19-201;Mms19-206;Mms19-214;Zdhhc16-206;Zdhhc16-201;Zdhhc16-209;Zdhhc16-208;Zdhhc16-211;Zdhhc16-207;Zdhhc16-204;Zdhhc16-210;Zdhhc16-203;Zdhhc16-202;Zdhhc16-205,Mms19;Mms19;Mms19;Mms19;Mms19;Mms19;Mms19;Mms19;Mms19;Zdhhc16;Zdhhc16;Zdhhc16;Zdhhc16;Zdhhc16;Zdhhc16;Zdhhc16;Zdhhc16;Zdhhc16;Zdhhc16;Zdhhc16,41403;41446;24916;30011;41406;41425;41421;15427;5916;6182;0;6140;0;0;0;0;0;-293;-1659;-1908,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,2,74168,ENSMUSG00000025157,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20150,cg23137579,-0.0000112,0.0000238,-0.469703489,0.638897095,loss,ns,0.000069,0.0000405,1.704828917,0.089228197,pos,ns,0.010641514,0.011850743,0.897961754,0.369902818,pos,ns,0.43191236,0.000363961,0.000407546,0.893054881,0.372520521,pos,ns,0.891428953,Calcoco1,Calcoco1_Intergenic_upstream,15,102737497,102737546,102737497,102737498,50,+,CGAACATTTGGGCCGTGGCCAGCCGCATTAAAGGTTATTACGGAAAACGC,Distal Intergenic,15,102706777,102722178,15402,2,Calcoco1-201,-15319,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,20,29,67488,ENSMUSG00000023055,conserved gene but different region,15,102737359,102737627,269,*,269,21,0.565055762,0.991922739,0.078066915,4.85E-14,CpGisland,TRUE,U11,Tr-P
5857,cg24370974,0.0000336,0.00000554,6.07185956,3.69E-09,gain,yes,-0.000016,0.00000941,-1.70460789,0.089269493,neg,ns,-0.002901293,0.002755485,-1.052915698,0.293199632,neg,ns,0.532836579,-0.0000301,0.0000948,-0.318048644,0.750662182,neg,ns,0.835871016,Msh5,Msh5_threeUTR,17,35038407,35038456,35038455,35038456,50,-,TTGTAGAGAACCTGCCAGTCGCTGACCTTGGTGTGGGACAACTTCATGCG,3' UTR,17,35028605,35046622,18018,2,Msh5-201,8166,Msh5-201;Msh5-202;Msh5-205;Msh5-211;Msh5-210;Msh5-207;Msh5-203,Msh5;Msh5;Msh5;Msh5;Msh5;Msh5;Msh5,0;0;0;0;0;5311;8069,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,17687,ENSMUSG00000007035,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19822,cg13596518,0.0000446,0.00000684,6.523820178,2.79E-10,gain,yes,-0.0000198,0.0000116,-1.704413056,0.089305908,neg,ns,0.001055293,0.003406292,0.309806918,0.756915942,pos,ns,0.120952347,-0.00000851,0.000117142,-0.072610572,0.942162839,neg,ns,0.719326506,Wnk4,Wnk4_threeUTR,11,101276817,101276866,101276865,101276866,50,-,CCTGCTCCCAGGCATCATGCGAAGGAACTCTCTGAGTGGCAGCAGCACCG,3' UTR,11,101260567,101277409,16843,1,Wnk4-202,16250,Cntd1-202;Cntd1-201;Coa3-201;Coa3-202;Wnk4-202;Wnk4-201;Wnk4-203;Wnk4-204;Wnk4-205,Cntd1;Cntd1;Coa3;Coa3;Wnk4;Wnk4;Wnk4;Wnk4;Wnk4,-2146;-2230;2248;2077;0;0;0;11509;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,3,69847,ENSMUSG00000035112,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7685,cg12397506,-0.00000682,0.00000278,-2.453498137,0.014697593,loss,ns,0.00000805,0.00000472,1.704393071,0.089309644,pos,ns,0.00019246,0.001383548,0.13910597,0.889456736,pos,ns,0.050875172,-0.0000232,0.0000476,-0.488560694,0.625498171,neg,ns,0.955403921,Npr2,Npr2_Exon,4,43643354,43643403,43643354,43643355,50,+,CGCTCATGACAGCCCATGGGAAATACCAGATCTTTGCCAACACCGGTCAC,"Exon (Npr2-201/Npr2, exon 9 of 22)",4,43631935,43651244,19310,1,Npr2-201,11419,Npr2-201;Npr2-202;Npr2-204;Npr2-208;Npr2-203;Npr2-205;Npr2-209;Npr2-206;Npr2-207;Npr2-210,Npr2;Npr2;Npr2;Npr2;Npr2;Npr2;Npr2;Npr2;Npr2;Npr2,0;0;0;2099;0;0;0;0;-3794;-4602,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,10,230103,ENSMUSG00000028469,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16468,cg03328139,-0.00000339,0.00000174,-1.944037796,0.052795391,loss,ns,-0.00000505,0.00000296,-1.704085262,0.0893672,neg,ns,-0.000708126,0.000868162,-0.815661264,0.415320157,neg,ns,0.38161699,-0.000000693,0.0000299,-0.023200064,0.981505614,neg,ns,0.956943685,Prepl,Prepl_Exon,17,85069008,85069057,85069008,85069009,50,-,CGTCTTAATGCAAGCCTCTAAATCAGCAAGGCCATTGAGTTTTTTAGTTA,"Exon (Prepl-201/Prepl, exon 10 of 14)",17,85063470,85090221,26752,2,Prepl-201,21164,Prepl-201;Prepl-206;Prepl-202;Slc3a1-201,Prepl;Prepl;Prepl;Slc3a1,0;0;0;40632,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,213760,ENSMUSG00000024127,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20341,cg20128948,0.00000707,0.00000219,3.23269835,0.001358325,gain,ns,-0.00000633,0.00000371,-1.703953662,0.089391817,neg,ns,-0.003555183,0.001088163,-3.267142936,0.001208242,neg,ns,2.917845931,0.0000918,0.0000374,2.452369801,0.014742864,pos,ns,0.044175198,Hoxc5,Hoxc5_Exon,15,103009674,103009723,103009674,103009675,50,+,CGTCGCCCTCAATTCCACCGCCTATGATCCAGTGAGGCATTTCTCGACCT,"Exon (Hoxc6-202/Hoxc6, exon 2 of 3)",15,102967443,103015676,48234,1,Hoxc5-202,42231,Hoxc5-202;Hoxc5-201;Hoxc6-202;Hoxc6-203;Hoxc6-201,Hoxc5;Hoxc5;Hoxc6;Hoxc6;Hoxc6,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,72,134,15424,ENSMUSG00000022485,mapped to different genes,15,103009647,103009812,166,*,166,14,0.602409639,0.948184415,0.084337349,5.77E-10,CpGisland,TRUE,U13,Hc-P
10913,cg24685024,-0.00000413,0.0000011,-3.747165428,0.00021326,loss,ns,0.00000319,0.00000187,1.703793578,0.089421769,pos,ns,0.0001,0.000548292,0.182369714,0.855411793,pos,ns,0.067824767,-0.00000905,0.0000189,-0.479992346,0.631571332,neg,ns,0.971030697,Tcf7l2,Tcf7l2_Intron,19,55887724,55887773,55887724,55887725,50,+,CGCTCTGGGATTGAGAGATAGACATAGGATTAAAAAAACAATTTCTAGGC,"Intron (Tcf7l2-213/Tcf7l2, intron 4 of 13)",19,55741820,55933229,191410,1,Tcf7l2-213,145904,Tcf7l2-213;Tcf7l2-201;Tcf7l2-208;Tcf7l2-211;Tcf7l2-212;Tcf7l2-206;Tcf7l2-204;Tcf7l2-205;Tcf7l2-222;Tcf7l2-215;Tcf7l2-214;Tcf7l2-207;Tcf7l2-202;Tcf7l2-209;Tcf7l2-210;Tcf7l2-217,Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,55,88,21416,ENSMUSG00000024985,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9601,cg25911271,-0.0000237,0.0000115,-2.069895586,0.039290093,loss,ns,0.0000332,0.0000195,1.703559573,0.089465566,pos,ns,-0.003650902,0.005709306,-0.639465172,0.522992618,neg,ns,0.281504441,0.000023,0.000196343,0.117230509,0.906753305,pos,ns,0.721332432,Arhgap36,Arhgap36_Intron,X,49465759,49465808,49465807,49465808,50,+,TGTCAACTAAAAGCAATTTCTCTGCCTCCTTGGGGACTGAAGCGTAATCG,"Intron (Arhgap36-203/Arhgap36, intron 1 of 6)",20,49463945,49496508,32564,1,Arhgap36-203,1814,Arhgap36-203;Arhgap36-202;Arhgap36-201,Arhgap36;Arhgap36;Arhgap36,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,5,75404,ENSMUSG00000036198,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16950,cg20528158,-0.000000652,0.00000305,-0.213726004,0.830901231,loss,ns,-0.00000883,0.00000519,-1.703502128,0.089476321,neg,ns,-0.001736751,0.001519106,-1.14327229,0.253807676,neg,ns,0.595495248,-0.00000261,0.0000522,-0.049991808,0.960161111,neg,ns,0.899161669,Mtmr4,Mtmr4_Exon,11,87603995,87604044,87603995,87603996,50,-,CGGCACTGGAGAGTACCAAATGGCTGCAGCACTTGTCGGTGATGCTAAAA,"Exon (Mtmr4-202/Mtmr4, exon 12 of 19)",11,87592162,87616302,24141,1,Mtmr4-202,11833,Mtmr4-202;Mtmr4-201;Mtmr4-203;Mtmr4-205,Mtmr4;Mtmr4;Mtmr4;Mtmr4,0;0;0;8343,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,170749,ENSMUSG00000018401,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18007,cg11115577,0.0000581,0.0000103,5.627038871,0.000000041,gain,yes,0.0000299,0.0000175,1.703484488,0.089479623,pos,ns,0.013296579,0.005139553,2.587108063,0.010133685,pos,ns,1.994232612,-0.000189498,0.000176749,-1.072131759,0.284494784,neg,ns,0.431890017,Arx,Arx_Intergenic_downstream,X,93301914,93301963,93301962,93301963,50,-,TAATTCCCATCTCTTTTTGCTCTCATCCAATTAGCACAGTGTATTAAGCG,Distal Intergenic,20,93286510,93298062,11553,1,Arx-202,15453,Arx-201;Arx-202;Pola1-201,Arx;Arx;Pola1,0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,32,11878,ENSMUSG00000035277,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16064,cg04719986,-0.00000811,0.000004,-2.027049246,0.043512876,loss,ns,0.0000116,0.0000068,1.703453841,0.089485362,pos,ns,0.006112626,0.001991537,3.069300804,0.002335257,pos,ns,2.631665282,-0.000162702,0.0000685,-2.375605358,0.018127901,neg,ns,0.922494622,Acaca,Acaca_Intron,11,84331766,84331815,84331766,84331767,50,-,CGTCCTGTCCAGTGATACTTTTCAAACCAAATGTGTTTCTACAGGAAAAT,"Intron (Acaca-202/Acaca, intron 41 of 55)",11,84173122,84401651,228530,1,Acaca-202,158644,Acaca-202;Acaca-201,Acaca;Acaca,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,28,28,107476,ENSMUSG00000020532,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14935,cg17421417,-0.0000035,0.00000527,-0.663564026,0.507462551,loss,ns,0.0000153,0.00000895,1.703369974,0.089501066,pos,ns,0.004738083,0.002623377,1.806101146,0.071872331,pos,ns,1.143438272,-0.0000593,0.0000902,-0.656936219,0.511709328,neg,ns,0.152672966,Nr2f1,Nr2f1_Intergenic_downstream,13,78184880,78184929,78184928,78184929,50,+,TATTTTCTGCATTGCATGTTATTTCTTTGTGCTTCAAAATTGAAATCACG,Distal Intergenic,13,78189872,78190443,572,2,Nr2f1-204,5514,Nr2f1-201;Nr2f1-205;Nr2f1-203;Nr2f1-202;Nr2f1-204,Nr2f1;Nr2f1;Nr2f1;Nr2f1;Nr2f1,0;0;0;0;5514,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,55,13865,ENSMUSG00000069171,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
21902,cg12448003,0.00000666,0.00000171,3.886601616,0.000124353,gain,ns,-0.00000496,0.00000291,-1.703294266,0.089515244,neg,ns,0.000295232,0.000853326,0.345977985,0.729593944,pos,ns,0.13691878,-0.00000593,0.0000293,-0.201988598,0.840058124,neg,ns,0.044594861,Bdnf,Bdnf_fiveUTR,2,109675870,109675919,109675918,109675919,50,-,AACATGTGATCAACTATTAACAGGATGGCTTTGGCAAAGCCATCCGCACG,Promoter (<=1kb),2,109675897,109727007,51111,1,Bdnf-207,0,Bdnf-201;Bdnf-207;Bdnf-208;Bdnf-210;Bdnf-206,Bdnf;Bdnf;Bdnf;Bdnf;Bdnf,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,8,18,12064,ENSMUSG00000048482,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
18740,cg27489284,-0.000100071,0.0000124,-8.097109006,1.30E-14,loss,yes,-0.0000358,0.000021,-1.703211399,0.089530765,neg,ns,0.014017812,0.006151152,2.278892297,0.023353195,pos,ns,1.631653702,-0.000681657,0.000211538,-3.222390613,0.00140649,neg,ns,0.880927238,Gm9287,Gm9287_Intergenic_downstream,14,97068898,97068947,97068946,97068947,50,-,AAATGCTTGAGACTTTGCCAGCTTTCAACTAACAAGCCAGGTTATTAACG,Distal Intergenic,14,96967825,96969754,1930,1,Gm9287-201,101122,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,6,668654,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7711,cg02437705,0.0000505,0.0000251,2.010833857,0.045208557,gain,ns,-0.0000727,0.0000427,-1.703043171,0.08956228,neg,ns,0.085335438,0.012502426,6.8255106,4.62E-11,pos,yes,10.33566298,-0.002080245,0.000429957,-4.83825808,0.00000207,neg,ns,0.556772155,Adra1b,Adra1b_Intron,11,43840680,43840729,43840728,43840729,50,+,TTCTCGGTACTCCCTGGGGCAAAGTCAAGCACAGAGCTCTGACTCACTCG,"Intron (Adra1b-201/Adra1b, intron 2 of 4)",11,43774606,43901210,126605,2,Adra1b-201,60481,Adra1b-202;Adra1b-204;Adra1b-201;Adra1b-203,Adra1b;Adra1b;Adra1b;Adra1b,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,5,11548,ENSMUSG00000050541,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3706,cg09512303,-0.0000141,0.0000085,-1.658229184,0.098282683,loss,ns,0.0000246,0.0000144,1.703002845,0.089569836,pos,ns,-0.001146205,0.00422834,-0.271076812,0.786512367,neg,ns,0.104294444,0.000667188,0.000145412,4.588253551,0.0000065,pos,ns,0.112623472,Id2,Id2_Promoter,12,25097596,25097645,25097596,25097597,50,+,CGAGCCTTTTGATGTACTTTGTGTGCATGTGTTTCTGTCACATACGTGCC,Promoter (<=1kb),12,25093799,25097140,3342,2,Id2-202,-456,Id2-202;Id2-201;Id2-203,Id2;Id2;Id2,-456;-1504;-1509,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,1,15902,ENSMUSG00000020644,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
21255,cg17655447,-0.0000526,0.0000136,-3.858950636,0.000138566,loss,ns,0.0000394,0.0000231,1.702894877,0.089590069,pos,ns,-0.017332994,0.006778755,-2.556958086,0.011035231,neg,ns,1.957218568,0.000371167,0.000233121,1.592166908,0.112366343,pos,ns,0.508103048,Acss3,Acss3_Exon,10,107004775,107004824,107004775,107004776,50,+,CGGAAATAAGCGCCAGCATCTGGTGTTCCCACAGGCTTCCCCTACAATGA,"Exon (Acss3-203/Acss3, exon 8 of 16)",10,106933517,107123583,190067,2,Acss3-203,118759,Acss3-203;Acss3-201,Acss3;Acss3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,380660,ENSMUSG00000035948,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4631,cg22660220,0.000000935,0.00000262,0.357381048,0.72104974,gain,ns,0.00000757,0.00000444,1.702743157,0.089618507,pos,ns,0.002324551,0.001301817,1.785620798,0.075138127,pos,ns,1.124139633,-0.0000686,0.0000448,-1.531636571,0.126631968,neg,ns,0.945483961,Pik3c3,Pik3c3_Intergenic_upstream,18,29987602,29987651,29987650,29987651,50,+,TGAATGTCAGCTTCAGCATAACTTTTCCCTCCACACTTGTCATGGTGTCG,Distal Intergenic,18,30272747,30348126,75380,1,Pik3c3-203,-285096,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,5,225326,ENSMUSG00000033628,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3025,cg10233922,0.0000907,0.000014,6.499073593,3.22E-10,gain,yes,0.0000404,0.0000237,1.702737009,0.08961966,pos,ns,0.019309568,0.006946135,2.779901119,0.005769814,pos,ns,2.238838196,0.0000239,0.000238877,0.1002229,0.92023215,pos,ns,0.57565704,Lrmda,Lrmda_Intron,14,22440392,22440441,22440440,22440441,50,+,TTGAAAATGTCACAGCGAGGGAATTGTTTGTCCCTGTCTCCACGGCAACG,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,420680,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206;Lrmda-202,Lrmda;Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20330,cg17613601,0.00000793,0.00000941,0.84239343,0.400217201,gain,ns,-0.0000272,0.000016,-1.70270309,0.089626019,neg,ns,-0.014291976,0.004683628,-3.051475551,0.002474102,neg,ns,2.606582364,0.000378892,0.00016107,2.35235267,0.019280108,pos,ns,0.10588544,Hoxc5,Hoxc5_Exon,15,102998765,102998814,102998813,102998814,50,+,GCGCTCGGTAAGTGTTTCCTTATTGGTTCAAATATGTAACTAATGGTCCG,"Exon (Hoxc6-202/Hoxc6, exon 1 of 3)",15,102967443,103015676,48234,1,Hoxc5-202,31322,Hoxc5-202;Hoxc6-202;Hoxc6-203;Hoxc8-201;Hoxc8-202,Hoxc5;Hoxc6;Hoxc6;Hoxc8;Hoxc8,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,72,134,15424,ENSMUSG00000022485,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
21943,cg20438247,0.00000184,0.00000102,1.808933443,0.071430029,gain,ns,-0.00000294,0.00000173,-1.702554736,0.089653835,neg,ns,0.002273284,0.000505961,4.493003092,0.00000993,pos,ns,5.003234364,-0.0000166,0.0000174,-0.956487698,0.339571205,neg,ns,0.97632396,Faf1,Faf1_Intron,4,109789554,109789603,109789602,109789603,50,-,ATTAACATTTGATTACTGATGCCACCTTCTCATTCCCCTTGCACCATCCG,"Intron (Faf1-201/Faf1, intron 7 of 18)",4,109676588,109963960,287373,1,Faf1-201,112966,Faf1-201,Faf1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,24,14084,ENSMUSG00000010517,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17357,cg20273254,-0.000009,0.00000406,-2.215254289,0.027469166,loss,ns,-0.0000118,0.0000069,-1.702384708,0.089685723,neg,ns,-0.002838815,0.002022593,-1.403552232,0.161453126,neg,ns,0.791953541,0.0000937,0.0000696,1.346577012,0.17910019,pos,ns,0.89834382,Agap1,Agap1_Intron,1,89848364,89848413,89848412,89848413,50,+,AGCAATTGAATTAATTAAATGCTACTCAGAACACGCATAACAAGCTACCG,"Intron (Agap1-201/Agap1, intron 16 of 17)",1,89454806,89897617,442812,1,Agap1-201,393558,Agap1-201;Agap1-204;Agap1-202,Agap1;Agap1;Agap1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,29,347722,ENSMUSG00000055013,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3341,cg11212378,-0.0000185,0.0000121,-1.526680865,0.127859997,loss,ns,0.0000351,0.0000206,1.702353439,0.089691588,pos,ns,-0.004644811,0.006037366,-0.769343932,0.442274949,neg,ns,0.354307659,0.0000885,0.000207625,0.426393917,0.670116766,pos,ns,0.77108329,Gm11890,Gm11890_Intergenic_upstream,4,23732743,23732792,23732743,23732744,50,-,CGTGCATGGCTGCACAGCAAAGATTGATGGGAAAAATTACTCTACGTGAT,Distal Intergenic,4,23659928,23660344,417,2,Gm11890-201,-72448,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,15,32,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14227,cg08438070,-0.0000517,0.000018,-2.87781391,0.004282496,loss,ns,0.000052,0.0000305,1.701918417,0.089773222,pos,ns,-0.024507509,0.008947015,-2.739182898,0.006515733,neg,ns,2.186036747,0.000962293,0.000307687,3.127506104,0.001930288,pos,ns,0.6511445,Onecut1,Onecut1_Exon,9,74854941,74854990,74854989,74854990,50,-,GATCCACGCAGCTATTCATCTCTGCCATGCAAGACACGGAATAATTTTCG,Promoter (6-7kb),9,74861921,74891781,29861,1,Onecut1-201,-6980,NA,NA,NA,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,16,28,15379,ENSMUSG00000043013,conserved gene but different region,9,74854915,74854990,76,*,76,8,0.513157895,1.6,0.105263158,0.00000148,CpGisland,TRUE,U13,Hc-P
21810,cg24475906,0.0000263,0.0000126,2.081578292,0.038201244,gain,ns,0.0000365,0.0000215,1.701887572,0.089779013,pos,ns,0.008662486,0.006291073,1.376948788,0.169521603,pos,ns,0.770774949,-0.000505173,0.000216349,-2.334985214,0.020182171,neg,ns,0.365455418,Lmo1,Lmo1_Intergenic_upstream,7,109191449,109191498,109191497,109191498,50,-,GCTATTAAGAAAGGCTCCTTTTTAATGCAAAAGTGACTAATTAACCAACG,Distal Intergenic,7,109138675,109175207,36533,2,Lmo1-202,-16291,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,34,66,109594,ENSMUSG00000036111,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7992,cg20627844,0.0000868,0.0000119,7.29920687,2.45E-12,gain,yes,0.0000344,0.0000202,1.701584353,0.089835951,pos,ns,0.01728596,0.005919566,2.92013961,0.003755273,pos,ns,2.425358492,-0.000266467,0.000203573,-1.308950043,0.191520737,neg,ns,0.228653535,Pax2,Pax2_Intergenic_upstream,19,44674873,44674922,44674873,44674874,50,-,CGCTATTGCTGAGAAATGGATTGCTTAATAAAGCGTATCATCCGGCATAT,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-81172,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,19,44674652,44674916,265,*,265,31,0.59245283,1.339693412,0.116981132,3.55E-26,CpGisland,TRUE,U13,Hc-P
13415,cg00857360,-0.00001,0.00000575,-1.740182338,0.082819359,loss,ns,0.0000166,0.00000976,1.701339207,0.089882006,pos,ns,0.007152622,0.002859769,2.501118611,0.012895794,pos,ns,1.88955191,-0.000309743,0.0000983,-3.149485402,0.001795009,neg,ns,0.886765926,Nr2f2,Nr2f2_Intron,7,70424137,70424186,70424137,70424138,50,-,CGTGTGTCCCTGGGGGGATGTGTATTCTAATTTACAATTGAACTACAGAT,"Intron (B130024G19Rik-205/B130024G19Rik-205, intron 2 of 3)",7,70354439,70366735,12297,2,Nr2f2-202,-57451,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,69,11819,ENSMUSG00000030551,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24422,cg08426099,0.00000324,0.00000311,1.043545423,0.297508838,gain,ns,-0.00000897,0.00000528,-1.700941047,0.089956849,neg,ns,-0.002913571,0.001545652,-1.885011678,0.060363439,neg,ns,1.219226029,0.0000594,0.0000532,1.117424935,0.264677937,pos,ns,0.873651202,Grik3,Grik3_Exon,4,125656283,125656332,125656283,125656284,50,-,CGCAGGCTCAATGGGAAGGATTAACTGGACGAATTGTTTTCAACAAAACT,"Exon (Grik3-201/Grik3, exon 8 of 16)",4,125490700,125714173,223474,1,Grik3-201,165583,Grik3-201,Grik3,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,18,14807,ENSMUSG00000001985,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21101,cg16733575,0.00000823,0.00000175,4.703921809,0.00000385,gain,ns,-0.00000506,0.00000297,-1.700886411,0.089967123,neg,ns,-0.000051,0.000871076,-0.058506005,0.953383274,neg,ns,0.020732472,0.00000563,0.00003,0.187873746,0.851098538,pos,ns,0.030933242,Barhl2,Barhl2_Promoter,5,106463647,106463696,106463695,106463696,50,+,TTAATTAACAAGCGGCTAATTAAAACGGCACTTTGAGTGCTAATCAATCG,Promoter (5-6kb),5,106452523,106458166,5644,2,Barhl2-201,-5481,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,8,27,104382,ENSMUSG00000034384,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
24743,cg14518255,-0.00000146,0.000000959,-1.521600618,0.129128527,loss,ns,-0.00000277,0.00000163,-1.700690631,0.090003945,neg,ns,-0.000828759,0.000477368,-1.736098558,0.083539956,neg,ns,1.078105757,-0.00000388,0.0000164,-0.23658724,0.813133272,neg,ns,0.987485592,Baz2a,Baz2a_threeUTR,10,128127144,128127193,128127192,128127193,50,-,ATGTGTGAAACCAAGAAACACTCTGTACTGTGTGCGGACCCGCAGTGACG,3' UTR,10,128091582,128129303,37722,1,Baz2a-209,35562,Baz2a-209;Baz2a-203;Baz2a-208;Baz2a-201;Baz2a-202;Rbms2-202;Rbms2-206,Baz2a;Baz2a;Baz2a;Baz2a;Baz2a;Rbms2;Rbms2,0;0;0;0;0;53104;53104,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,7,116848,ENSMUSG00000040054,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7790,cg11474776,-0.000000641,0.00000351,-0.182541555,0.855277062,loss,ns,0.0000101,0.00000597,1.700508064,0.090038294,pos,ns,0.00246438,0.001748639,1.409312943,0.159744995,pos,ns,0.796572739,-0.000151874,0.0000601,-2.525522113,0.012050838,neg,ns,0.911261914,Arhgap15,Arhgap15_Intron,2,44313630,44313679,44313678,44313679,50,+,ACCCATGTGGTAAAATGATCATGATAAATGTCAGACCAGTGCAGGTAACG,"Intron (Arhgap15-203/Arhgap15, intron 12 of 14)",2,43748824,44395953,647130,1,Arhgap15-203,564806,Arhgap15-203;Arhgap15-202;Arhgap15-201,Arhgap15;Arhgap15;Arhgap15,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,72,78,76117,ENSMUSG00000049744,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11218,cg25639785,-0.0000118,0.00000282,-4.168283816,0.0000399,loss,ns,0.00000815,0.00000479,1.700467303,0.090045964,pos,ns,0.000697089,0.001403896,0.496538723,0.61986628,pos,ns,0.207701988,-0.0000712,0.0000483,-1.47449042,0.141364399,neg,ns,0.945761797,Slc25a21,Slc25a21_Intron,12,57076737,57076786,57076737,57076738,50,+,CGGCTGTGGCAGCTCAACCATGCAATTTTATAGCAGGCAGCAAACAAGGC,"Intron (Slc25a21-201/Slc25a21, intron 1 of 9)",12,56712634,57197472,484839,2,Slc25a21-201,120686,Slc25a21-201;Slc25a21-205;Slc25a21-202,Slc25a21;Slc25a21;Slc25a21,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,7,217593,ENSMUSG00000035472,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27655,cg27655494,-0.0000123,0.00000911,-1.355893084,0.176120051,loss,ns,0.0000263,0.0000155,1.700364508,0.09006531,pos,ns,0.00000087,0.004531969,0.000191892,0.999847016,pos,ns,0.0000664,-0.000190549,0.000155854,-1.222608976,0.222406119,neg,ns,0.792429207,Rgs7,Rgs7_Exon,1,175121889,175121938,175121937,175121938,50,-,ACTCACTTTGCTTGTGCTTCTGCTTGCATGAAAATGAACTCCCACTTCCG,"Exon (Rgs7-206/Rgs7, exon 8 of 18)",1,175059087,175492500,433414,2,Rgs7-206,370562,Rgs7-206;Rgs7-207;Rgs7-203;Rgs7-201,Rgs7;Rgs7;Rgs7;Rgs7,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,24012,ENSMUSG00000026527,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13029,cg23914384,-0.00000496,0.00000171,-2.895605053,0.004053166,loss,ns,0.00000494,0.00000291,1.700190446,0.090098077,pos,ns,0.00107795,0.000851963,1.265253705,0.2067306,pos,ns,0.684595236,-0.0000992,0.0000293,-3.385801869,0.000801096,neg,ns,0.963167637,Epb41l3,Epb41l3_threeUTR,17,69262151,69262200,69262199,69262200,50,-,ATACATGAAGGATTCTATGTCTGCTGCAGAGGTTGGTACTGGCCAGTACG,Promoter (<=1kb),17,69262189,69285959,23771,1,Epb41l3-208,0,Epb41l3-220;Epb41l3-214;Epb41l3-211;Epb41l3-202;Epb41l3-201;Epb41l3-215;Epb41l3-219;Epb41l3-216;Epb41l3-217;Epb41l3-218;Epb41l3-205;Epb41l3-207;Epb41l3-208;Epb41l3-210;Epb41l3-206,Epb41l3;Epb41l3;Epb41l3;Epb41l3;Epb41l3;Epb41l3;Epb41l3;Epb41l3;Epb41l3;Epb41l3;Epb41l3;Epb41l3;Epb41l3;Epb41l3;Epb41l3,0;0;0;0;0;0;0;0;0;0;0;0;0;-63;0,TRUE,FALSE,TRUE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,2,13823,ENSMUSG00000024044,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18815,cg21564446,-0.00000705,0.00000137,-5.159242657,0.000000443,loss,yes,0.00000395,0.00000232,1.700132582,0.090108971,pos,ns,0.001002151,0.000680568,1.47252119,0.141894721,pos,ns,0.848033761,-0.0000434,0.0000234,-1.852782544,0.064863786,neg,ns,0.059696893,Rsf1,Rsf1_Exon,7,97581018,97581067,97581018,97581019,50,-,CGCTGGTCTATTATTGGTGTTCGCAAGTGGTGCTCCTTCCACATAAGGCC,"Exon (Rsf1-207/Rsf1, exon 1 of 1)",7,97579889,97582973,3085,1,Rsf1-207,1129,Aamdc-206;Aamdc-202;Aamdc-204;Aamdc-213;Aamdc-208;Aamdc-203;Aamdc-209;Aamdc-207;Aamdc-212;Aamdc-210;Aamdc-205;Aamdc-211;Aamdc-215;Rsf1-207;Rsf1-206;Rsf1-201;Rsf1-203,Aamdc;Aamdc;Aamdc;Aamdc;Aamdc;Aamdc;Aamdc;Aamdc;Aamdc;Aamdc;Aamdc;Aamdc;Aamdc;Rsf1;Rsf1;Rsf1;Rsf1,-1521;-1539;-1620;-1522;-1532;-1521;-1577;-1536;-1576;-1544;-1599;-1636;-2791;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,6,233532,ENSMUSG00000035623,conserved gene but different region,7,97581018,97581232,215,*,215,13,0.572093023,0.747326203,0.060465116,0.000000155,CpGisland,TRUE,U1,Pr-A
17661,cg21127068,0.0000478,0.00000504,9.478727415,6.97E-19,gain,yes,-0.0000146,0.00000857,-1.699879109,0.090156708,neg,ns,0.00715268,0.002510796,2.848769435,0.0046824,pos,ns,2.329531488,-0.000165755,0.0000863,-1.919660088,0.055818475,neg,ns,0.062689418,Zic4,Zic4_fiveUTR,9,91368959,91369008,91368959,91368960,50,-,CGGCGCTCTCTGCAGGAAACGCGAACGGCTCCAGTTCAAAGCCACATGCA,Promoter (<=1kb),9,91368970,91387793,18824,1,Zic4-204,0,Zic1-201;Zic1-202;Zic4-208;Zic4-206;Zic4-207;Zic4-211;Zic4-204;Zic4-203;Zic4-210;Zic4-209;Zic4-212,Zic1;Zic1;Zic4;Zic4;Zic4;Zic4;Zic4;Zic4;Zic4;Zic4;Zic4,0;0;0;0;0;0;0;0;-1996;0;-2342,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,55,22774,ENSMUSG00000036972,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
2415,cg19067771,-0.00000308,0.00000443,-0.695874532,0.487028768,loss,ns,0.0000128,0.00000752,1.699603986,0.090208546,pos,ns,-0.001729665,0.002202861,-0.785190262,0.432941688,neg,ns,0.363570593,0.000163006,0.0000758,2.151718891,0.032191616,pos,ns,0.912779118,Rorb,Rorb_Intergenic_upstream,19,19344253,19344302,19344253,19344254,50,-,CGCATGCACAGTTGTTTGTTTTCACACTTTATGGGAATGAATCACACCAT,Distal Intergenic,19,18930605,19111196,180592,2,Rorb-203,-233106,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,10,225998,ENSMUSG00000036192,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1451,cg22662148,0.000593912,0.0000317,18.71649149,7.81E-53,gain,yes,0.0000916,0.0000539,1.699573741,0.090214246,pos,ns,0.0000128,0.015793342,0.000812222,0.999352463,pos,ns,0.000281313,0.001864502,0.000543132,3.432873386,0.000678382,pos,ns,0.415825363,C1ql3,C1ql3_fiveUTR,2,13010803,13010852,13010803,13010804,50,+,CGAGCTCACCAGCACCGGGATGAGGATCACCAGCAGCAGCACCATCACCA,Promoter (<=1kb),2,13003457,13011806,8350,2,C1ql3-201,954,C1ql3-201,C1ql3,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,9,227580,ENSMUSG00000049630,conserved gene but different region,2,13010702,13010819,118,*,118,12,0.711864407,0.806837607,0.101694915,1.49E-09,CpGisland,TRUE,U3,Pr-B
5742,cg08860763,-0.0000106,0.00000527,-2.010562714,0.045237381,loss,ns,-0.0000152,0.00000895,-1.699358,0.090254914,neg,ns,-0.011474998,0.002621635,-4.377039237,0.0000165,neg,ns,4.783458833,0.000249976,0.0000902,2.772646525,0.005896766,pos,ns,0.903651808,Kctd15,Kctd15_fiveUTR,7,34650785,34650834,34650785,34650786,50,-,CGCTCGGCCGCTCCTTGCGGTGAGGCATCTAGGCTTCCATCCCTGCCCAG,5' UTR,7,34639014,34654398,15385,2,Kctd15-202,3564,Kctd15-202;Kctd15-203;Kctd15-201;Kctd15-206;Kctd15-208;Kctd15-204;Kctd15-205;Kctd15-207,Kctd15;Kctd15;Kctd15;Kctd15;Kctd15;Kctd15;Kctd15;Kctd15,0;0;0;-2041;0;0;0;5898,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,25,233107,ENSMUSG00000030499,conserved gene but different region,7,34650713,34650803,91,*,91,12,0.725274725,1.02631579,0.131868132,5.70E-11,CpGisland,TRUE,U11,Tr-P
7497,cg12882947,0.00000339,0.00000534,0.634019769,0.526535469,gain,ns,-0.0000154,0.00000908,-1.699345076,0.09025735,neg,ns,-0.005253172,0.002659734,-1.975074017,0.049146665,neg,ns,1.308505948,0.000103375,0.0000915,1.130179816,0.259274139,pos,ns,0.874873226,Mrps9,Mrps9_Intron,1,42888890,42888939,42888938,42888939,50,-,CAGCGAAGCTGTGGAAAATCTGTGCCTTTTAACTTTTCTACTTAATCACG,"Intron (Mrps9-201/Mrps9, intron 5 of 10)",1,42851233,42905682,54450,1,Mrps9-201,37657,Mrps9-201;Mrps9-202;Mrps9-203;Mrps9-204;Mrps9-206,Mrps9;Mrps9;Mrps9;Mrps9;Mrps9,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,12,69527,ENSMUSG00000060679,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22120,cg17803027,0.0000172,0.0000126,1.36728283,0.172527225,gain,ns,-0.0000364,0.0000214,-1.699201774,0.090284372,neg,ns,0.008923369,0.006274222,1.422227202,0.155965682,pos,ns,0.806970952,-0.000231152,0.00021577,-1.071290192,0.284872294,neg,ns,0.345099467,Eif4g2,Eif4g2_Exon,7,111080257,111080306,111080257,111080258,50,-,CGTCTAGTGCTTCGTGCAGGAATCCATTTCTGAGCGTTTTGCCCTGGGGT,"Exon (Eif4g2-213/Eif4g2, exon 4 of 22)",7,111067750,111083030,15281,2,Eif4g2-213,2724,Eif4g2-213;Eif4g2-206;Eif4g2-204;Eif4g2-211;Eif4g2-210;Eif4g2-209;Eif4g2-203;Eif4g2-201;Eif4g2-212;Eif4g2-205,Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2,0;0;-4872;-4048;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,20,22,13690,ENSMUSG00000005610,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U4,Pr-F
23089,cg25843844,0.0000139,0.0000055,2.522603238,0.012149237,gain,ns,-0.0000159,0.00000934,-1.699168558,0.090290636,neg,ns,-0.008423829,0.002737326,-3.077392864,0.002274624,neg,ns,2.643090416,0.000216812,0.0000941,2.303163225,0.021931351,pos,ns,0.796934166,Rnf220,Rnf220_Exon,4,117285113,117285162,117285161,117285162,50,+,TTTATGCAGGTGCTAACGCGGCTTGGCTGTCACCTTCAATGCATCACCCG,"Exon (Rnf220-210/Rnf220, exon 4 of 4)",4,117271463,117497052,225590,2,Rnf220-201,211890,Rnf220-201;Rnf220-203;Rnf220-212;Rnf220-202;Rnf220-205;Rnf220-209;Rnf220-213;Rnf220-210;Rnf220-206;Rnf220-208,Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,15,152,66743,ENSMUSG00000028677,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24742,cg09278326,-0.0000291,0.000011,-2.64122963,0.008679275,loss,ns,0.0000318,0.0000187,1.699005015,0.090321484,pos,ns,-0.000748684,0.005479201,-0.13664109,0.891403191,neg,ns,0.049925815,0.0000413,0.000188429,0.218997975,0.826795739,pos,ns,0.709558476,Baz2a,Baz2a_threeUTR,10,128127136,128127185,128127184,128127185,50,+,TCTAGTGAATGTGTGAAACCAAGAAACACTCTGTACTGTGTGCGGACCCG,3' UTR,10,128091582,128129303,37722,1,Baz2a-209,35554,Baz2a-209;Baz2a-203;Baz2a-208;Baz2a-201;Baz2a-202;Rbms2-202;Rbms2-206,Baz2a;Baz2a;Baz2a;Baz2a;Baz2a;Rbms2;Rbms2,0;0;0;0;0;53112;53112,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,7,116848,ENSMUSG00000040054,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6957,cg19579041,-0.000000539,0.00000169,-0.318416477,0.750383453,loss,ns,0.00000488,0.00000287,1.698951496,0.090331581,pos,ns,0.001384721,0.000841874,1.644809085,0.101022786,pos,ns,0.99558066,-0.0000529,0.000029,-1.826129674,0.068792483,neg,ns,0.955168232,Gm12133,Gm12133_Intron,11,40138202,40138251,40138250,40138251,50,+,CCAGCTCACTTATCATATTCAAAATATTAATTTAGAGCAAAATTAAATCG,"Intron (Gm12132-201/Gm12132-201, intron 5 of 7)",11,40422694,40423354,661,2,Gm12133-201,285103,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,100416392,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3555,cg11410180,-0.00000815,0.00000571,-1.428008133,0.154296163,loss,ns,-0.0000165,0.00000969,-1.698926119,0.090336369,neg,ns,0.003645658,0.002840218,1.283583716,0.200246284,pos,ns,0.698435535,-0.000150572,0.0000977,-1.541560796,0.124200493,neg,ns,0.875962126,Agap3,Agap3_Intron,5,24495285,24495334,24495333,24495334,50,-,ACTAATTGATGGCTCCATGTTTAATTCATTAATCATTAGCATCAAATTCG,"Intron (Agap3-201/Agap3, intron 11 of 17)",5,24452177,24502047,49871,1,Agap3-201,43108,Agap3-201;Agap3-202,Agap3;Agap3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,13,213990,ENSMUSG00000023353,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6155,cg17915315,0.0000223,0.0000201,1.109089824,0.268251093,gain,ns,-0.000058,0.0000342,-1.698919777,0.090337565,neg,ns,0.020810326,0.010007798,2.079411053,0.038401265,pos,ns,1.415654474,-0.000500164,0.000344167,-1.453258218,0.147163602,neg,ns,0.460358195,Mrrf,Mrrf_Intron,2,36159484,36159533,36159532,36159533,50,+,AACAGAACTAAATGTTTCCATGTTCTGCCAAGATGGGTTGCCAGTTATCG,"Intron (Mrrf-201/Mrrf, intron 4 of 6)",2,36136389,36190647,54259,1,Mrrf-201,23095,Mrrf-201;Mrrf-203,Mrrf;Mrrf,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,67871,ENSMUSG00000026887,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12455,cg13615735,-0.00000964,0.00000368,-2.624051205,0.009119198,loss,ns,0.0000106,0.00000624,1.698861509,0.09034856,pos,ns,0.001263746,0.001829139,0.690896555,0.490147557,pos,ns,0.309673158,-0.000133501,0.0000629,-2.122296247,0.034605498,neg,ns,0.927341377,Gm13577,Gm13577_Intergenic_downstream,2,64366777,64366826,64366825,64366826,50,-,TAGTGTGTTGGTGATATATTCTAATAGTCTTCTCTTTACAGCCCCACACG,Distal Intergenic,2,64474745,64474949,205,2,Gm13577-201,108172,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,17,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9471,cg19843353,-0.00000933,0.00000889,-1.049227244,0.29489083,loss,ns,0.0000257,0.0000151,1.698544426,0.090408408,pos,ns,0.008464601,0.004426652,1.912190346,0.056773307,pos,ns,1.245855808,-0.000395614,0.000152232,-2.598751678,0.009803547,neg,ns,0.818689098,Trim41,Trim41_fiveUTR,11,48816021,48816070,48816069,48816070,50,-,TGCATCTGCCGAATCACCTGGACCATATTGGCCAGCTGCAGGTTGGGGCG,5' UTR,11,48806404,48817353,10950,2,Trim41-201,1283,Trim41-201;Trim41-202;Trim41-204;Trim41-203,Trim41;Trim41;Trim41;Trim41,0;-3626;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,2,211007,ENSMUSG00000040365,conserved gene but different region,11,48815972,48816228,257,*,257,14,0.59922179,0.608489768,0.054474708,0.000000162,CpGisland,TRUE,NA,NRS
24816,cg17806656,-0.00000257,0.00000363,-0.707303311,0.479909374,loss,ns,0.0000105,0.00000617,1.698512716,0.090414395,pos,ns,0.002149426,0.001807467,1.189192008,0.235274195,pos,ns,0.628425704,-0.0000922,0.0000622,-1.4830335,0.139081417,neg,ns,0.917984569,Gm4410,Gm4410_Intron,3,128674698,128674747,128674698,128674699,50,+,CGGTCACAGGAAAACAAAACACACATAATGGAGTGGTTATTAATTCAATA,"Intron (Gm43824-201/Gm43824-201, intron 2 of 4)",3,128839836,128840521,686,1,Gm4410-201,-165089,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,13,100043393,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15453,cg17059687,0.0000986,0.0000174,5.669167474,3.29E-08,gain,yes,-0.0000502,0.0000296,-1.698293912,0.090455714,neg,ns,0.019009397,0.008657905,2.195611538,0.028860554,pos,ns,1.539695341,-0.000505377,0.000297745,-1.697351305,0.090633892,neg,ns,0.436770817,Srsf5,Srsf5_Exon,12,80948232,80948281,80948280,80948281,50,-,CTACAGTGATCAGTTGGCCACCTCTAGATCTGTGTTTGCCGGTCTAGACG,"Exon (Srsf5-207/Srsf5, exon 5 of 7)",12,80945504,80950507,5004,1,Srsf5-201,2728,Slc10a1-202;Slc10a1-201;Srsf5-201;Srsf5-204;Srsf5-207;Srsf5-202;Srsf5-203;Srsf5-212;Srsf5-211;Srsf5-206;Srsf5-208;Srsf5-210;Srsf5-205;Srsf5-209,Slc10a1;Slc10a1;Srsf5;Srsf5;Srsf5;Srsf5;Srsf5;Srsf5;Srsf5;Srsf5;Srsf5;Srsf5;Srsf5;Srsf5,20424;19798;0;0;0;0;0;0;2698;0;2662;2653;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,10,20384,ENSMUSG00000021134,conserved gene but different region,12,80948271,80948449,179,*,179,13,0.480446927,1.283507998,0.072625698,1.77E-08,CpGisland,TRUE,NA,NRS
25784,cg09879356,0.0000938,0.00000676,13.87336086,2.24E-34,gain,yes,-0.0000195,0.0000115,-1.698286269,0.090457158,neg,ns,0.004811954,0.003365975,1.429587207,0.153842512,pos,ns,0.812923638,-0.0000425,0.000115756,-0.367218468,0.71370662,neg,ns,0.191890174,Uncx,Uncx_fiveUTR,5,139543461,139543510,139543461,139543462,50,+,CGGATGATGAATCTCCTATTATTGGATCAGTCTATTTGCCGCTCAATGTC,Promoter (<=1kb),5,139543494,139548179,4686,1,Uncx-201,0,Uncx-201;Uncx-202,Uncx;Uncx,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,88,22255,ENSMUSG00000029546,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
13155,cg25896754,-0.000022,0.00000809,-2.719981223,0.006896858,loss,ns,0.0000234,0.0000138,1.69827191,0.09045987,pos,ns,-0.001932937,0.00402849,-0.479816605,0.631696159,neg,ns,0.199491764,0.0000473,0.000138539,0.341583337,0.732895906,pos,ns,0.101600175,Trp53,Trp53_Promoter,11,69580287,69580336,69580335,69580336,50,+,CTTGCCCTTACTTGTCATGGCGACTGTCCAGCTTTGTGCCAGGAGCCTCG,Promoter (<=1kb),11,69580359,69591872,11514,1,Trp53-203,-23,Trp53-203;Trp53-206;Trp53-201;Trp53-205;Trp53-202;Wrap53-201;Wrap53-202,Trp53;Trp53;Trp53;Trp53;Trp53;Wrap53;Wrap53,-23;-23;-23;-66;-69;0;-32,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,1,22059,ENSMUSG00000059552,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
12485,cg22026774,0.00000228,0.00000285,0.799424294,0.424656534,gain,ns,0.00000821,0.00000484,1.698112355,0.090490011,pos,ns,0.003649076,0.001416494,2.576132753,0.010453944,pos,ns,1.980719815,-0.000122821,0.0000487,-2.52131313,0.012192956,neg,ns,0.939343208,Creb1,Creb1_threeUTR,1,64574175,64574224,64574175,64574176,50,+,CGGGTACTACCATTCTACAGTATGCACAGACCACTGATGGACAGCAGATC,3' UTR,1,64532645,64597695,65051,1,Creb1-204,41530,Creb1-204;Creb1-203;Creb1-207;Creb1-201;Creb1-202;Creb1-205;Creb1-210;Creb1-209;Creb1-211,Creb1;Creb1;Creb1;Creb1;Creb1;Creb1;Creb1;Creb1;Creb1,0;0;0;0;0;0;0;0;-2164,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,4,12912,ENSMUSG00000025958,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26785,cg06285055,-0.00000266,0.00000283,-0.937833399,0.349060115,loss,ns,0.00000817,0.00000481,1.697955165,0.090519714,pos,ns,0.004652138,0.001409247,3.301152991,0.001075284,pos,ns,2.968476905,-0.000149553,0.0000485,-3.085859866,0.002212735,neg,ns,0.934950829,Kdm5c,Kdm5c_Exon,X,152248749,152248798,152248797,152248798,50,-,ATCCATTCCAAAGAATTTGGCAGCGGTTTCCCTGTCAGTGACAGTAAACG,"Exon (Kdm5c-202/Kdm5c, exon 10 of 26)",20,152233020,152273768,40749,1,Kdm5c-202,15729,Kdm5c-202;Kdm5c-203;Kdm5c-204;Kdm5c-201,Kdm5c;Kdm5c;Kdm5c;Kdm5c,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,7,20591,ENSMUSG00000025332,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9930,cg07088428,0.000000735,0.00000219,0.336266369,0.736897508,gain,ns,0.00000631,0.00000372,1.697860028,0.090537695,pos,ns,0.001564243,0.001088586,1.43694992,0.151740721,pos,ns,0.818897856,-0.0000274,0.0000374,-0.732771463,0.464251529,neg,ns,0.041421563,Snx10,Snx10_Intergenic_downstream,6,51612770,51612819,51612770,51612771,50,+,CGAGCTATTTGCATTCCCCGGCAGTCATTTTTATATGCGGAGGTAATGAA,Distal Intergenic,6,51544566,51589043,44478,1,Snx10-205,68204,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,10,71982,ENSMUSG00000038301,mapped to different genes,6,51612600,51612978,379,*,379,46,0.707124011,0.972879464,0.121372032,1.85E-39,CpGisland,TRUE,NA,NRS
3527,cg19492414,0.000000388,0.00000293,0.132607786,0.894589607,gain,ns,0.00000845,0.00000498,1.697855608,0.09053853,pos,ns,0.003645851,0.001457899,2.500756209,0.012908729,pos,ns,1.889116506,-0.0000613,0.0000501,-1.221752416,0.222729507,neg,ns,0.905821491,Pip5k1b,Pip5k1b_Exon,19,24390339,24390388,24390387,24390388,50,-,CTTACCAAGTAATCATCAGGCTTGATACCAAAAAGTTCTCTGAAATATCG,"Exon (Pip5k1b-202/Pip5k1b, exon 5 of 14)",19,24294794,24555842,261049,2,Pip5k1b-202,165454,Pip5k1b-202;Pip5k1b-201,Pip5k1b;Pip5k1b,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,18719,ENSMUSG00000024867,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10788,cg18802184,0.000176726,0.0000123,14.31892613,4.79E-36,gain,yes,-0.0000356,0.000021,-1.697806196,0.09054787,neg,ns,0.014805009,0.006142805,2.410138199,0.01652856,pos,ns,1.781764986,-0.000241215,0.000211251,-1.141842249,0.254400805,neg,ns,0.109512242,Kcnj3,Kcnj3_fiveUTR,2,55437195,55437244,55437195,55437196,50,+,CGTATTATGTCTGCACTCCGAAGGAAATTTGGGGACGATTATCAGGTAGT,5' UTR,2,55435970,55598145,162176,1,Kcnj3-201,1225,Kcnj3-201;Kcnj3-203;Kcnj3-202,Kcnj3;Kcnj3;Kcnj3,0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,6,16519,ENSMUSG00000026824,conserved gene and region,2,55437146,55437552,407,*,407,28,0.587223587,0.798151002,0.068796069,4.81E-17,CpGisland,TRUE,U13,Hc-P
3185,cg00572334,0.0000245,0.00000943,2.59628983,0.009872535,gain,ns,-0.0000272,0.000016,-1.697775164,0.090553737,neg,ns,-0.001801744,0.004691313,-0.38405952,0.701197629,neg,ns,0.154159561,-0.00033621,0.000161334,-2.08393639,0.03798462,neg,ns,0.067267897,Klf9,Klf9_Exon,19,23142220,23142269,23142268,23142269,50,+,AAATCCTCCCATCTCAAAGCCCATTACAGAGTGCATACAGGTTAGCGGCG,Promoter (<=1kb),19,23141226,23168134,26909,1,Klf9-201,994,Klf9-201;Klf9-202,Klf9;Klf9,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,13,16601,ENSMUSG00000033863,conserved gene but different region,19,23142265,23142345,81,*,81,9,0.691358025,0.974598931,0.111111111,0.000000145,CpGisland,TRUE,U1,Pr-A
9213,cg03012177,0.00000777,0.00000405,1.917171916,0.056135026,gain,ns,0.0000117,0.00000688,1.697385711,0.090627384,pos,ns,0.004052806,0.002016511,2.009810804,0.045317392,pos,ns,1.34373509,-0.0000112,0.0000693,-0.162022058,0.871394036,neg,ns,0.506392195,Cadm1,Cadm1_Intron,9,47613119,47613168,47613167,47613168,50,-,ATTTTGTATGCAGTGTTCATAAACTTGATGAGTCTAACAGTTTGGCACCG,"Intron (Cadm1-204/Cadm1, intron 1 of 9)",9,47530173,47853385,323213,1,Cadm1-204,82946,Cadm1-204;Cadm1-209;Cadm1-206;Cadm1-202;Cadm1-203;Cadm1-207;Cadm1-205;Cadm1-211;Cadm1-210;Cadm1-208;Cadm1-201,Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,77,54725,ENSMUSG00000032076,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3925,cg22632648,-0.00000211,0.000000962,-2.191218503,0.029179946,loss,ns,0.00000277,0.00000163,1.697375605,0.090629295,pos,ns,0.0007934,0.000478879,1.656785677,0.098574523,pos,ns,1.006235314,-0.0000245,0.0000165,-1.490190199,0.137190967,neg,ns,0.972428702,Lsm1,Lsm1_Exon,8,25792177,25792226,25792177,25792178,50,+,CGAGATGGAAGGACACTTATAGGCTTTTTAAGAAGCATTGATCAATTTGG,"Exon (Lsm1-201/Lsm1, exon 2 of 4)",8,25785288,25803975,18688,1,Lsm1-201,6889,Lsm1-201;Lsm1-202;Lsm1-203;Lsm1-204,Lsm1;Lsm1;Lsm1;Lsm1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,2,67207,ENSMUSG00000037296,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1098,cg07867189,-0.00000287,0.00000252,-1.138105237,0.255955353,loss,ns,0.00000726,0.00000428,1.697334606,0.090637051,pos,ns,0.004023651,0.001253467,3.210017466,0.001466395,pos,ns,2.833748921,-0.0000969,0.0000431,-2.248500834,0.025246467,neg,ns,0.090422625,Ing1,Ing1_fiveUTR,8,11556445,11556494,11556445,11556446,50,-,CGGGGCTGAATGTTTCCCAAGTGTTTGAAACTGGTATTTGGGTTTTCCAC,Promoter (<=1kb),8,11555571,11563250,7680,1,Ing1-207,874,Ing1-207;Ing1-206;Ing1-205;Ing1-201;Ing1-203;Ing1-204;Ing1-202,Ing1;Ing1;Ing1;Ing1;Ing1;Ing1;Ing1,0;0;0;0;0;-1702;-1935,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,3,26356,ENSMUSG00000045969,conserved gene and region,8,11555620,11556446,827,*,827,95,0.701330109,0.934196602,0.114873035,2.38E-78,CpGisland,TRUE,U1,Pr-A
2011,cg09278623,-0.00000938,0.00000278,-3.368009863,0.000852648,loss,ns,-0.00000803,0.00000473,-1.697193526,0.090663744,neg,ns,-0.001474519,0.00138562,-1.064158255,0.288085207,neg,ns,0.540479042,0.0000243,0.0000477,0.510936295,0.609759339,pos,ns,0.930281498,Tes,Tes_Exon,6,17100383,17100432,17100383,17100384,50,+,CGTGATGGTCAATGACAAGCCCGTGTGCAAGCCCTGCTATGTGAAGAATC,"Exon (Tes-202/Tes, exon 6 of 7)",6,17065149,17105823,40675,1,Tes-202,35234,Tes-202;Tes-204;Tes-201,Tes;Tes;Tes,0;35215;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,2,21753,ENSMUSG00000029552,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5551,cg01213247,0.0000251,0.000004,6.278410154,1.15E-09,gain,yes,-0.0000115,0.00000679,-1.697144542,0.090673014,neg,ns,-0.003442648,0.001988801,-1.731017057,0.08444372,neg,ns,1.073432645,0.000150637,0.0000684,2.202464401,0.02836836,pos,ns,0.916595072,Pbx3,Pbx3_Intron,2,34244911,34244960,34244959,34244960,50,-,TAAAGCGGCATGTTCACAGCTAGTAAAACAACTCAATAAATAGCCTCACG,"Intron (Pbx3-202/Pbx3, intron 2 of 7)",2,34171457,34372038,200582,2,Pbx3-202,127078,Pbx3-202;Pbx3-201;Pbx3-210;Pbx3-206;Pbx3-207;Pbx3-209;Pbx3-204;Pbx3-205;Pbx3-203,Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,82,18516,ENSMUSG00000038718,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11056,cg23598264,0.0000702,0.0000114,6.149993922,2.39E-09,gain,yes,-0.0000329,0.0000194,-1.696934234,0.09071282,neg,ns,0.015932254,0.005681827,2.804072127,0.005364502,pos,ns,2.270470563,-0.000569873,0.000195398,-2.91647713,0.003798434,neg,ns,0.235910663,Gm13518,Gm13518_Intergenic_downstream,2,56460878,56460927,56460878,56460879,50,+,CGTTTGGAAGGACAGTATTGATCTCTTGTCAGAAACCAGTTGCCTGCCTG,Distal Intergenic,2,56039853,56040085,233,1,Gm13518-201,421025,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,37,37,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19582,cg05474883,-0.00000151,0.00000134,-1.121328145,0.263016064,loss,ns,0.00000387,0.00000228,1.696777696,0.090742458,pos,ns,0.000335434,0.000668415,0.501835005,0.616139812,pos,ns,0.210320728,0.00000758,0.000023,0.329902309,0.741696595,pos,ns,0.968977508,Hnrnpd,Hnrnpd_threeUTR,5,99962081,99962130,99962129,99962130,50,+,GTTGGAAGAGACCATACCAAACGGCAGCATTCGAGAGCGTGAGCATCTCG,3' UTR,5,99955935,99978938,23004,2,Hnrnpd-211,16808,Hnrnpd-211;Hnrnpd-201;Hnrnpd-203;Hnrnpd-202;Hnrnpd-208;Hnrnpd-209;Hnrnpd-204;Hnrnpd-205;Hnrnpd-206;Hnrnpd-210,Hnrnpd;Hnrnpd;Hnrnpd;Hnrnpd;Hnrnpd;Hnrnpd;Hnrnpd;Hnrnpd;Hnrnpd;Hnrnpd,0;0;0;0;0;0;0;0;4257;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,8,11991,ENSMUSG00000000568,conserved gene and region,5,99962102,99962210,109,*,109,11,0.614678899,1.07437276,0.100917431,9.65E-09,CpGisland,TRUE,U10,Tr-S
6608,cg09410314,0.0000123,0.00000226,5.45529513,0.0000001,gain,yes,-0.0000065,0.00000383,-1.696406336,0.090812801,neg,ns,0.001828974,0.001122867,1.628843396,0.104361931,pos,ns,0.981457894,-0.0000758,0.0000386,-1.962262718,0.050626192,neg,ns,0.033387187,Rreb1,Rreb1_Intron,13,37827971,37828020,37827971,37827972,50,+,CGAGCAGTTCACATTCCATTACGAAATTCTACACGGCTTCAGAGCCAGCA,"Intron (Rreb1-204/Rreb1, intron 1 of 3)",13,37778400,37893849,115450,1,Rreb1-204,49571,Rreb1-204;Rreb1-208;Rreb1-203;Rreb1-207;Rreb1-210;Rreb1-206;Rreb1-202,Rreb1;Rreb1;Rreb1;Rreb1;Rreb1;Rreb1;Rreb1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,10,68750,ENSMUSG00000039087,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
14478,cg14225468,-0.000000183,0.00000219,-0.083420633,0.933570924,loss,ns,-0.00000631,0.00000372,-1.696390817,0.090815742,neg,ns,-0.000505161,0.001090005,-0.463448671,0.643368013,neg,ns,0.191540535,-0.0000415,0.0000375,-1.107777581,0.268816655,neg,ns,0.938173292,Agps,Agps_threeUTR,2,75909634,75909683,75909682,75909683,50,+,CTACTTCTATTTTGCCTTTAACTACAGGGGAATTAGTGACCCACTGACCG,3' UTR,2,75832177,75931350,99174,1,Agps-201,77457,Agps-201;Agps-203;Agps-206;Agps-207,Agps;Agps;Agps;Agps,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,2,228061,ENSMUSG00000042410,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22405,cg24975908,0.0000589,0.0000204,2.8856609,0.004179928,gain,ns,-0.0000588,0.0000346,-1.696274519,0.090837781,neg,ns,0.017956895,0.010151024,1.768973843,0.077881491,pos,ns,1.108565742,-0.000957569,0.000349093,-2.743019799,0.006441897,neg,ns,0.428358789,Psma1,Psma1_Intron,7,114323060,114323109,114323108,114323109,50,-,AGACAGTACATCACACATGAGGCCTAAATTATGAATAAATTCCATTGACG,"Intron (4933406I18Rik-202/4933406I18Rik-202, intron 1 of 3)",7,114264606,114276118,11513,2,Psma1-201,-46991,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,26440,ENSMUSG00000030751,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
16283,cg07300517,0.0000144,0.00000402,3.580947231,0.000397293,gain,ns,-0.0000116,0.00000682,-1.696154814,0.09086047,neg,ns,-0.003287805,0.001999027,-1.644703114,0.101044664,neg,ns,0.995486618,0.000189932,0.0000687,2.762799315,0.006073135,pos,ns,0.960357353,Nfix,Nfix_Exon,8,84713799,84713848,84713847,84713848,50,-,GTCCCGGGGTCCGATGCTGACAAACCGGTTGGCAGAGGAGGCGCCTGTCG,"Exon (Nfix-204/Nfix, exon 10 of 11)",8,84704712,84773396,68685,2,Nfix-204,59548,Nfix-204;Nfix-201;Nfix-202;Nfix-203;Nfix-206;Nfix-205,Nfix;Nfix;Nfix;Nfix;Nfix;Nfix,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,20,49,18032,ENSMUSG00000001911,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3403,cg17201550,0.000256829,0.0000207,12.43162943,4.61E-29,gain,yes,-0.0000595,0.0000351,-1.696112391,0.090868512,neg,ns,0.019314877,0.010282348,1.878450028,0.061257974,pos,ns,1.212837369,-0.000681672,0.000353609,-1.92775482,0.054798966,neg,ns,0.125187611,Kcnma1,Kcnma1_Exon,14,24003892,24003941,24003892,24003893,50,+,CGGCACCTCCATGGTCACCGGGATGATGAGCGCATCCATCTTGGGCTCGT,Promoter (<=1kb),14,23299891,24003930,704040,2,Kcnma1-211,0,Kcnma1-205;Kcnma1-212;Kcnma1-211;Kcnma1-229;Kcnma1-234;Kcnma1-223;Kcnma1-214;Kcnma1-216;Kcnma1-219;Kcnma1-220;Kcnma1-224;Kcnma1-233;Kcnma1-236;Kcnma1-237;Kcnma1-213;Kcnma1-228;Kcnma1-221;Kcnma1-225;Kcnma1-226;Kcnma1-230;Kcnma1-235;Kcnma1-238;Kcnma1-215,Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,16,41,16531,ENSMUSG00000063142,conserved gene and region,14,24003872,24003953,82,*,82,9,0.658536585,1.012345679,0.109756098,0.000000162,CpGisland,TRUE,U3,Pr-B
6785,cg06898890,-0.0000102,0.00000354,-2.89057322,0.004116864,loss,ns,0.0000102,0.00000602,1.69604536,0.090881219,pos,ns,0.001177287,0.001762917,0.667806402,0.504754034,pos,ns,0.296920201,-0.000144391,0.0000606,-2.381644683,0.017838738,neg,ns,0.932774299,Azin1,Azin1_fiveUTR,15,38514492,38514541,38514540,38514541,50,-,AACCCCCCTATCATCAGCTAGGTTCCCAAGGTGGCTCAGCGTTGAAGTCG,5' UTR,15,38487427,38519266,31840,2,Azin1-201,4725,Azin1-201;Azin1-203;Azin1-205;Azin1-207;Azin1-204;Azin1-208,Azin1;Azin1;Azin1;Azin1;Azin1;Azin1,0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,9,54375,ENSMUSG00000037458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16796,cg23941256,-0.000000499,0.00000103,-0.486097687,0.627241336,loss,ns,0.00000296,0.00000175,1.696031127,0.090883918,pos,ns,0.001941886,0.000511377,3.797370096,0.000175938,pos,ns,3.754640203,-0.000056,0.0000176,-3.186421262,0.001587236,neg,ns,0.031812862,Rps6kb1,Rps6kb1_fiveUTR,11,86544010,86544059,86544058,86544059,50,+,AGTTTTCAGCTGTCACTTCTAACAGCTGAGCGCTTCCTAGGAGAGAAGCG,Promoter (<=1kb),11,86498871,86544805,45935,2,Rps6kb1-207,746,Rps6kb1-207;Rps6kb1-201;Rps6kb1-202;Rps6kb1-204;Tubd1-205;Tubd1-201;Tubd1-202;Tubd1-203,Rps6kb1;Rps6kb1;Rps6kb1;Rps6kb1;Tubd1;Tubd1;Tubd1;Tubd1,0;0;0;0;-932;-932;-932;-932,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,4,72508,ENSMUSG00000020516,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
23200,cg06116392,-0.0000164,0.00000609,-2.695832028,0.007404705,loss,ns,0.0000175,0.0000103,1.695980621,0.090893494,pos,ns,0.008849449,0.003030946,2.919698843,0.003760443,pos,ns,2.424760946,-0.000250939,0.000104234,-2.407459039,0.016648028,neg,ns,0.878280468,Rnf220,Rnf220_Intron,4,117434491,117434540,117434491,117434492,50,-,CGATGCTTTTACAGAAACCGTTCCACTGTAAAACTTTATGATTTGAATCT,"Intron (Rnf220-201/Rnf220, intron 2 of 14)",4,117271463,117497052,225590,2,Rnf220-201,62512,Rnf220-201;Rnf220-207,Rnf220;Rnf220,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19611,cg22783179,0.0000898,0.0000118,7.60928005,3.33E-13,gain,yes,-0.000034,0.00002,-1.695960303,0.090897347,neg,ns,0.020101514,0.005873438,3.42244429,0.00070395,pos,ns,3.152458061,-0.000657487,0.000201987,-3.255094578,0.001258896,neg,ns,0.313711778,Gm8641,Gm8641_Intergenic_upstream,9,100095481,100095530,100095481,100095482,50,-,CGCCTTTCTATTTGGTTTAGGGCTGAAGTAAGACAGCTTGTAAGTAACTG,Distal Intergenic,9,99946564,99947389,826,2,Gm8641-201,-148141,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,15,667456,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18875,cg10842921,-0.00000213,0.00000681,-0.31282058,0.754627318,loss,ns,0.0000196,0.0000116,1.695920049,0.09090498,pos,ns,0.003316171,0.003389815,0.978274996,0.328701141,pos,ns,0.483198789,-0.000237853,0.000116575,-2.040338251,0.042163754,neg,ns,0.886236962,Dach1,Dach1_Intron,14,97795487,97795536,97795487,97795488,50,+,CGATGAAAACAAATGTTAATGATTCATGTGATATTTGATAAGACAACGAA,"Intron (Dach1-201/Dach1, intron 10 of 10)",14,97786853,98169543,382691,2,Dach1-201,374007,Dach1-201;Dach1-202,Dach1;Dach1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,76,13134,ENSMUSG00000055639,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15062,cg22346366,-0.00000701,0.00000386,-1.815643826,0.070391052,loss,ns,0.0000111,0.00000656,1.695823906,0.090923214,pos,ns,0.00546867,0.001922731,2.844220243,0.004748027,pos,ns,2.32348683,-0.00018711,0.0000661,-2.829752298,0.004962341,neg,ns,0.92097843,Ntrk3,Ntrk3_Intron,7,78698904,78698953,78698952,78698953,50,+,CACTTTCTTATGCAGAGGCATAATCAATTATCTTATTTAAAGGCATTACG,"Intron (Ntrk3-218/Ntrk3, intron 5 of 10)",7,78581066,78718220,137155,2,Ntrk3-218,19267,Ntrk3-218;Ntrk3-219,Ntrk3;Ntrk3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,15,18213,ENSMUSG00000059146,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10033,cg05439214,0.0000277,0.00000928,2.983419983,0.003076898,gain,ns,0.0000267,0.0000158,1.695748769,0.090937465,pos,ns,-0.000239275,0.004618667,-0.051805994,0.958716646,neg,ns,0.018309732,-0.0000938,0.000158836,-0.590564053,0.555242837,neg,ns,0.850720046,Gm19197,Gm19197_Intron,17,52060363,52060412,52060411,52060412,50,-,CCCTCATTAGATCAATCATGGCCATTGTCTTACAGTTGAGTGGGAAATCG,"Intron (Gm19585-204/Gm19585-204, intron 2 of 2)",17,52008967,52009569,603,1,Gm19197-201,51445,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,11,100418416,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12621,cg18486261,0.0000268,0.0000133,2.018162357,0.044435388,gain,ns,-0.0000382,0.0000225,-1.69560155,0.090965395,neg,ns,0.048800743,0.006597493,7.396861192,1.31E-12,pos,yes,11.88120465,-0.000970461,0.000226887,-4.277281833,0.0000252,neg,ns,0.617273587,Ccnl1,Ccnl1_threeUTR,3,65946880,65946929,65946928,65946929,50,+,CTGTGACTGCGGGACCTGCTTCTTGATCTCGAGCTGTATGTTCCAGATCG,3' UTR,3,65946151,65958162,12012,2,Ccnl1-203,11233,Ccnl1-203;Ccnl1-214;Ccnl1-202;Ccnl1-201;Ccnl1-205;Ccnl1-206;Ccnl1-212;Ccnl1-207;Ccnl1-213;Ccnl1-211;Ccnl1-208;Ccnl1-204;Ccnl1-209;Ccnl1-210,Ccnl1;Ccnl1;Ccnl1;Ccnl1;Ccnl1;Ccnl1;Ccnl1;Ccnl1;Ccnl1;Ccnl1;Ccnl1;Ccnl1;Ccnl1;Ccnl1,0;0;0;0;0;0;0;0;0;0;0;4939;6064;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,7,7,56706,ENSMUSG00000027829,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16462,cg18747712,-0.0000132,0.00000795,-1.656993326,0.098532499,loss,ns,0.0000229,0.0000135,1.695448938,0.090994354,pos,ns,0.00618938,0.003957065,1.564134034,0.118806314,pos,ns,0.925160477,-0.000167785,0.000136083,-1.232958168,0.218525526,neg,ns,0.842245342,Cntln,Cntln_Intron,4,85050462,85050511,85050510,85050511,50,-,GCATATTCACCACTGACAGCTAAGGATTCCCAGGCAAGCCTACTAAGTCG,"Intron (Cntln-201/Cntln, intron 15 of 25)",4,84884309,85131921,247613,1,Cntln-201,166153,Cntln-201;Cntln-204,Cntln;Cntln,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,25,338349,ENSMUSG00000038070,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5136,cg14838557,-0.0000235,0.00000853,-2.749930664,0.006310813,loss,ns,0.0000246,0.0000145,1.695247583,0.091032575,pos,ns,-0.00837233,0.004245329,-1.972127629,0.049483664,neg,ns,1.305538155,0.000414727,0.000145997,2.840662748,0.004799929,pos,ns,0.731784711,Plxna4,Plxna4_Intron,6,32472211,32472260,32472259,32472260,50,+,TTTCTCCCCACTTAATAGTTTCTAGTACAGGATAAAAATAGCAATACACG,"Intron (Plxna4-201/Plxna4, intron 3 of 31)",6,32144268,32588192,443925,2,Plxna4-201,115932,Plxna4-201,Plxna4,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,9,243743,ENSMUSG00000029765,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10143,cg02192891,0.000177242,0.0000259,6.855703103,3.84E-11,gain,yes,-0.0000744,0.0000439,-1.694825528,0.091112731,neg,ns,0.017326259,0.012867417,1.346521888,0.179117935,pos,ns,0.746860927,-0.000926431,0.000442509,-2.09358372,0.03710928,neg,ns,0.518058343,Gm28308,Gm28308_Exon,6,52204178,52204227,52204178,52204179,50,-,CGGCCGACGCTGAGATCCATGCCATTGTAGCCGTAGCCGTACCTGCCGGA,"Exon (Hoxa5-201/Hoxa5, exon 1 of 2)",6,52163359,52213339,49981,2,Gm28308-201,9112,Gm28308-201;Hoxa3-201;Hoxa3-203;Hoxa5-201;Hoxa6-201,Gm28308;Hoxa3;Hoxa3;Hoxa5;Hoxa6,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,30,103,,NA,mapped to different genes,6,52203658,52204321,664,*,664,70,0.680722892,0.922222222,0.105421687,5.32E-55,CpGisland,TRUE,U3,Pr-B
16048,cg17131811,0.000111038,0.000111341,0.997276701,0.319408015,gain,ns,-0.000320557,0.000189154,-1.69469137,0.091138221,neg,ns,-0.108310133,0.055415598,-1.954506244,0.05154005,neg,ns,1.287855165,0.001863994,0.001905738,0.978095835,0.328789592,pos,ns,0.393570288,Bnc2,Bnc2_Intron,4,84284931,84284980,84284931,84284932,50,+,CGTCATGAGAATATAGTTTTGAAGTGGTTAAACAAGTGAAAAATAATTTG,"Intron (Bnc2-201/Bnc2, intron 7 of 7)",4,84275095,84675034,399940,2,Bnc2-201,390054,Bnc2-201;Bnc2-202;Bnc2-214;Bnc2-218;Bnc2-215;Bnc2-222;Bnc2-216;Bnc2-213;Bnc2-219,Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,91,242509,ENSMUSG00000028487,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15033,cg03180785,-0.00000338,0.00000217,-1.558076459,0.120235405,loss,ns,0.00000625,0.00000369,1.694638672,0.091148236,pos,ns,0.002268289,0.001081106,2.098119137,0.036703764,pos,ns,1.435289396,-0.0000809,0.0000372,-2.17623181,0.030292649,neg,ns,0.951299519,Dgkh,Dgkh_threeUTR,14,78575897,78575946,78575897,78575898,50,+,CGCCTTTCCAGATGCAAAAGTTCAGCCCCTCTGATGTCATGACGGATGAA,3' UTR,14,78558750,78732776,174027,2,Dgkh-202,156830,Dgkh-202;Dgkh-201;Dgkh-203;Dgkh-206;Dgkh-204,Dgkh;Dgkh;Dgkh;Dgkh;Dgkh,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,3,380921,ENSMUSG00000034731,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4471,cg09559229,0.0000339,0.00000579,5.858111662,0.000000012,gain,yes,-0.0000167,0.00000983,-1.694547615,0.091165542,neg,ns,0.008359764,0.002879309,2.90339284,0.003956352,pos,ns,2.402705068,-0.00032716,0.000099,-3.304009125,0.001064761,neg,ns,0.067725995,Lep,Lep_Intergenic_upstream,6,28981434,28981483,28981482,28981483,50,+,GAAACCTAATGACGCAATGACGTCAATGCAGGTCAGCAGCAGACTCTCCG,Distal Intergenic,6,29060220,29073877,13658,1,Lep-201,-78737,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,4,16846,ENSMUSG00000059201,mapped to different genes,6,28981385,28981694,310,*,310,26,0.651612903,0.79393223,0.083870968,4.58E-18,CpGisland,TRUE,U3,Pr-B
6403,cg15156881,-0.00000554,0.00000253,-2.193330151,0.029026041,loss,ns,0.00000728,0.00000429,1.694433608,0.091187214,pos,ns,0.000617959,0.001258162,0.491159761,0.62366099,pos,ns,0.20505142,-0.0000357,0.0000433,-0.824089521,0.410522276,neg,ns,0.950949325,Cpeb3,Cpeb3_Exon,19,37139092,37139141,37139092,37139093,50,+,CGAAACTCATTGGTGGGCCACTGGGAGGGTAGTGTTTACCTTTCAGAGGT,"Exon (Cpeb3-201/Cpeb3, exon 3 of 11)",19,37021291,37207462,186172,2,Cpeb3-201,68321,Cpeb3-201;Cpeb3-203;Cpeb3-212;Cpeb3-210;Cpeb3-204;Cpeb3-208;Cpeb3-202;Cpeb3-205,Cpeb3;Cpeb3;Cpeb3;Cpeb3;Cpeb3;Cpeb3;Cpeb3;Cpeb3,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,9,208922,ENSMUSG00000039652,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18800,cg10727440,0.00000478,0.00000372,1.282913635,0.200480669,gain,ns,-0.0000107,0.00000633,-1.694016266,0.091266583,neg,ns,-0.001116595,0.001853287,-0.602494705,0.547285343,neg,ns,0.261786183,-0.0000831,0.0000637,-1.303539463,0.193357889,neg,ns,0.907691292,Arhgap23,Arhgap23_Exon,11,97463594,97463643,97463594,97463595,50,+,CGGCTGACCACCGCTGACTTCTGTGAATATCCCTTTCAGGCTGAGGACCG,"Exon (Arhgap23-203/Arhgap23, exon 12 of 24)",11,97415533,97502402,86870,1,Arhgap23-203,48061,Arhgap23-203;Arhgap23-202;Arhgap23-204,Arhgap23;Arhgap23;Arhgap23,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,8,58996,ENSMUSG00000049807,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22779,cg21297261,-0.00000285,0.00000214,-1.333592843,0.183316361,loss,ns,0.00000615,0.00000363,1.694015072,0.09126681,pos,ns,0.002977468,0.001063118,2.800694201,0.005419547,pos,ns,2.266036985,-0.0000856,0.0000366,-2.342403326,0.019792444,neg,ns,0.960576562,Sox6,Sox6_Intron,7,115940761,115940810,115940761,115940762,50,-,CGTTGTCATGGAAAATGGCATTCAAGCCCTATTTGTGGATTTTCACAGCT,"Intron (Sox6-210/Sox6, intron 2 of 15)",7,115470872,116031047,560176,2,Sox6-210,90237,Sox6-210;Sox6-201;Sox6-202;Sox6-204;Sox6-206;Sox6-209;Sox6-214;Sox6-208,Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,37,57,20679,ENSMUSG00000051910,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26614,cg05415875,0.00000833,0.0000031,2.685734795,0.007626859,gain,ns,-0.00000892,0.00000527,-1.693869193,0.091294566,neg,ns,0.004572885,0.001542766,2.96408116,0.00327124,pos,ns,2.485287591,-0.000152617,0.0000531,-2.876544177,0.004299306,neg,ns,0.929095479,Pex14,Pex14_Intron,4,148988934,148988983,148988934,148988935,50,-,CGATGGAAGCATTTGCTTCGACCTTGCTCTTCTCATTGGGGCATGAAATT,"Intron (Pex14-201/Pex14, intron 3 of 8)",4,148960535,149099876,139342,2,Pex14-201,110893,Pex14-201;Pex14-202;Pex14-205;Pex14-203,Pex14;Pex14;Pex14;Pex14,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,41,48,56273,ENSMUSG00000028975,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11429,cg05300802,-0.0000044,0.00000145,-3.031241215,0.002640886,loss,ns,0.00000417,0.00000246,1.693735669,0.091319977,pos,ns,0.001526341,0.000721645,2.115085795,0.035220224,pos,ns,1.453207885,-0.0000311,0.0000248,-1.251904685,0.21154835,neg,ns,0.048458731,Fgf9,Fgf9_Intron,14,58076270,58076319,58076318,58076319,50,+,GGAGGGTTATTTAAGTCTTTCATCCGGTTGCAGTGAGAAGCGGGCCCCCG,"Intron (Fgf9-203/Fgf9, intron 1 of 2)",14,58070547,58112720,42174,1,Fgf9-203,5723,Fgf9-203;Fgf9-201;Fgf9-202;Fgf9-204,Fgf9;Fgf9;Fgf9;Fgf9,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,8,14180,ENSMUSG00000021974,conserved gene and region,14,58076294,58076599,306,*,306,33,0.745098039,0.781881533,0.107843137,1.46E-26,CpGisland,TRUE,U3,Pr-B
10535,cg05571450,-0.0000166,0.0000079,-2.096148243,0.036879515,loss,ns,-0.0000227,0.0000134,-1.693661241,0.091334144,neg,ns,-0.011432032,0.003931109,-2.908093198,0.003898945,neg,ns,2.409052871,0.000164641,0.000135191,1.217847465,0.22420808,pos,ns,0.729037747,Pdlim4,Pdlim4_Intron,11,54060510,54060559,54060558,54060559,50,-,AGTCTGCCCAGCCCAGATGGGAAACAGGCCATTAGGAAATTCCTGCTTCG,"Intron (Pdlim4-201/Pdlim4, intron 2 of 6)",11,54054928,54069014,14087,2,Pdlim4-201,8455,Pdlim4-201;Pdlim4-202;Pdlim4-204;Pdlim4-203;Pdlim4-205,Pdlim4;Pdlim4;Pdlim4;Pdlim4;Pdlim4,0;0;0;0;4009,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,30794,ENSMUSG00000020388,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7834,cg13544332,0.0000953,0.0000174,5.483818942,8.65E-08,gain,yes,-0.00005,0.0000295,-1.693629128,0.091340257,neg,ns,0.046975052,0.008650846,5.430110592,0.000000114,pos,ns,6.943410666,-0.000983336,0.000297502,-3.305310766,0.001059997,neg,ns,0.426877729,Bcl9l,Bcl9l_Intron,9,44498891,44498940,44498891,44498892,50,+,CGTTACTGGTCTCCAGAAGAGCCCAGCTGCAGCCCCGGGGCCCCGCCAGG,"Intron (Bcl9l-206/Bcl9l, intron 1 of 7)",9,44482825,44510422,27598,1,Bcl9l-206,16066,Bcl9l-206;Bcl9l-202;Bcl9l-203;Bcl9l-205;Bcl9l-201;Bcl9l-204,Bcl9l;Bcl9l;Bcl9l;Bcl9l;Bcl9l;Bcl9l,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,9,80288,ENSMUSG00000063382,conserved gene but different region,9,44498867,44499178,312,*,312,28,0.743589744,0.65511811,0.08974359,2.98E-20,CpGisland,TRUE,NA,NRS
22991,cg07119855,0.0000049,0.00000201,2.437788901,0.015339086,gain,ns,-0.00000578,0.00000341,-1.693611475,0.091343618,neg,ns,-0.002250902,0.000999532,-2.251955959,0.025024704,neg,ns,1.60163105,0.0000884,0.0000344,2.571922359,0.010579185,pos,ns,0.044912169,Cnot2,Cnot2_fiveUTR,10,116581440,116581489,116581488,116581489,50,-,ACCAAAAACTCACCGCATGAATTTTCTTGTCCCGCGGATCCAAGATGGCG,Promoter (<=1kb),10,116498088,116581483,83396,2,Cnot2-214,0,Cnot2-210;Cnot2-212;Cnot2-203;Cnot2-202;Cnot2-213;Cnot2-209;Cnot2-214;Cnot2-215;Cnot2-205;Cnot2-207;Cnot2-211;Cnot2-217;Cnot2-216;Cnot2-206;Cnot2-201;Cnot2-208;Cnot2-218,Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,6,15,72068,ENSMUSG00000020166,conserved gene and region,10,116580884,116582169,1286,*,1286,165,0.732503888,0.960135747,0.128304821,1.12E-144,CpGisland,TRUE,U1,Pr-A
11085,cg16184756,0.0000393,0.00000628,6.263055794,1.26E-09,gain,yes,0.0000181,0.0000107,1.693560003,0.091353417,pos,ns,0.003265838,0.003124861,1.045114467,0.296784316,pos,ns,0.527559054,0.0000318,0.000107464,0.295613013,0.767723542,pos,ns,0.054122262,Nkx2-1,Nkx2-1_Exon,12,56535316,56535365,56535316,56535317,50,-,CGCTAAAGCAACAAGACAATAGAAGCCTACATCTTGCCCGAGATAATTAG,"Exon (Gm26973-202/Gm26973-202, exon 1 of 3)",12,56531958,56536908,4951,2,Nkx2-1-201,1543,Nkx2-1-202;Nkx2-1-201,Nkx2-1;Nkx2-1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,29,21869,ENSMUSG00000001496,mapped to different genes,12,56535178,56535355,178,*,178,14,0.573033708,0.967391304,0.078651685,1.48E-09,CpGisland,TRUE,U13,Hc-P
24571,cg15052029,-0.0000552,0.0000154,-3.585714582,0.000390391,loss,ns,-0.0000443,0.0000262,-1.693372621,0.091389098,neg,ns,-0.000238937,0.007664443,-0.031174688,0.975150287,neg,ns,0.010928447,0.00038309,0.00026358,1.45341466,0.147120214,pos,ns,0.520945938,Maz,Maz_Exon,7,127024869,127024918,127024917,127024918,50,+,TTCCTACCTCACATTTGAAGGGCCGTTCTGTTGAGTGCACTTGTCTGACG,"Exon (Maz-203/Maz, exon 3 of 6)",7,127022130,127026526,4397,2,Maz-203,1608,Gm42742-201;Gm42742-203;Gm42742-204;Gm42742-202;Kif22-202;Kif22-201;Kif22-205;Kif22-206;Maz-203;Maz-201;Maz-204;Maz-202;Maz-206;Maz-205;Prrt2-201;Prrt2-202;Prrt2-204;Prrt2-205;Prrt2-206;Prrt2-207,Gm42742;Gm42742;Gm42742;Gm42742;Kif22;Kif22;Kif22;Kif22;Maz;Maz;Maz;Maz;Maz;Maz;Prrt2;Prrt2;Prrt2;Prrt2;Prrt2;Prrt2,0;0;0;0;4039;17553;3198;7786;0;0;0;0;0;0;0;0;-4967;-3913;-3732;-4514,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,16,17,17188,ENSMUSG00000030678,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
8271,cg02634323,-0.0000113,0.00000457,-2.475862098,0.013825357,loss,ns,-0.0000132,0.00000777,-1.693217822,0.091418584,neg,ns,-0.005107542,0.002276565,-2.243529561,0.025568539,neg,ns,1.592294082,0.000115946,0.0000783,1.480958807,0.1396332,pos,ns,0.881197381,Slf2,Slf2_Intergenic_upstream,19,44909461,44909510,44909509,44909510,50,+,CATTCAAACTGCTCATTTTCCCCTAGGAAGCATAAGGCCCAGCCACTACG,Distal Intergenic,19,44931151,44983188,52038,1,Slf2-201,-21641,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,15,17,226151,ENSMUSG00000036097,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17147,cg27244652,0.0000621,0.0000164,3.777017007,0.000190256,gain,ns,-0.0000473,0.0000279,-1.693169324,0.091427823,neg,ns,-0.021345301,0.008178668,-2.609874888,0.009497193,neg,ns,2.022404744,0.000645701,0.000281264,2.295714062,0.022359468,pos,ns,0.549105943,Rps6-ps2,Rps6-ps2_Intergenic_upstream,8,88779609,88779658,88779609,88779610,50,+,CGAGGGTAAAATTGATTAATATTTGTTTTCAAAATGACACGCGGTGATGT,Distal Intergenic,8,88806391,88807137,747,1,Rps6-ps2-201,-26733,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,14,675985,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17319,cg11861802,-0.00000538,0.00000239,-2.247121953,0.025335444,loss,ns,0.00000688,0.00000406,1.693030319,0.091454308,pos,ns,0.002183324,0.001190862,1.833398002,0.06770211,pos,ns,1.169397794,-0.0000971,0.000041,-2.37171721,0.018316241,neg,ns,0.935544513,Gm5356,Gm5356_Intergenic_upstream,8,89675030,89675079,89675078,89675079,50,+,ATGTAATTAAACTCTGTAACAAAATGTCACAACTGCTAGTTACTTCTGCG,Distal Intergenic,8,89186946,89187560,615,2,Gm5356-201,-487470,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,23,23,384862,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15897,cg14221098,0.0000241,0.0000101,2.387339643,0.017569791,gain,ns,0.000029,0.0000171,1.69297845,0.091464193,pos,ns,0.003501723,0.005016038,0.69810535,0.485634624,pos,ns,0.313690357,0.000517378,0.000172501,2.999273743,0.002925533,pos,ns,0.19664914,Sfrp2,Sfrp2_Exon,3,83766783,83766832,83766783,83766784,50,-,CGCTGGTCATGAAGCAGTGCCACCCGGACACCAAGAAGTTCCTGTGCTCG,Promoter (<=1kb),3,83766321,83774316,7996,1,Sfrp2-201,462,Sfrp2-201;Sfrp2-202;Sfrp2-203,Sfrp2;Sfrp2;Sfrp2,0;0;-21,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,20319,ENSMUSG00000027996,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
3523,cg09594074,0.0000196,0.0000107,1.824032004,0.069109852,gain,ns,0.0000309,0.0000182,1.692918083,0.091475698,pos,ns,0.008678445,0.005344158,1.623912565,0.105410809,pos,ns,0.977114854,-0.000308572,0.000183785,-1.678984463,0.094162679,neg,ns,0.466836754,Gm12067,Gm12067_Intergenic_downstream,11,24370548,24370597,24370596,24370597,50,-,CTTGGCTTTCCTCATTCCCTCTCCTCATTAATTTGTGTGAGCTCAGCTCG,Distal Intergenic,11,24552438,24553962,1525,2,Gm12067-201,183414,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,58,100417843,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10406,cg19121690,-0.00000637,0.00000269,-2.369156892,0.018441199,loss,ns,-0.00000773,0.00000457,-1.692894775,0.091480141,neg,ns,0.001453038,0.001337441,1.086431411,0.278132224,pos,ns,0.555748691,-0.000128876,0.000046,-2.801979867,0.005398537,neg,ns,0.93833988,Mxi1,Mxi1_Exon,19,53370307,53370356,53370307,53370308,50,+,CGAATGGACAGCATTGGATCAACTATTTCTTCAGATCGTTCTGATTCAGA,"Exon (Mxi1-201/Mxi1, exon 5 of 6)",19,53310518,53373293,62776,1,Mxi1-201,59789,Gm10197-201;Mxi1-201;Mxi1-208;Mxi1-203;Mxi1-202;Mxi1-205;Mxi1-206;Mxi1-204;Mxi1-207,Gm10197;Mxi1;Mxi1;Mxi1;Mxi1;Mxi1;Mxi1;Mxi1;Mxi1,1410;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,10,17859,ENSMUSG00000025025,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4645,cg04312122,0.00000309,0.00000448,0.689795686,0.490838725,gain,ns,-0.0000129,0.0000076,-1.692587172,0.091538786,neg,ns,-0.004032703,0.002227851,-1.810131171,0.071243662,neg,ns,1.147253763,0.0000126,0.0000766,0.16510398,0.868969752,pos,ns,0.855526286,Sptan1,Sptan1_Exon,2,30028657,30028706,30028657,30028658,50,-,CGGGTCATTCGTGTCTATCAGTATGAAGTTGGGGATGATCTGTCTGGAAG,"Exon (Sptan1-205/Sptan1, exon 51 of 57)",2,29965560,30031448,65889,1,Sptan1-205,63097,Sptan1-205;Sptan1-204;Sptan1-203;Sptan1-202;Sptan1-201;Sptan1-208;Sptan1-212;Sptan1-207;Sptan1-213;Sptan1-214;Wdr34-201;Wdr34-202,Sptan1;Sptan1;Sptan1;Sptan1;Sptan1;Sptan1;Sptan1;Sptan1;Sptan1;Sptan1;Wdr34;Wdr34,0;0;0;0;0;0;6836;0;0;-1603;20175;3799,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,7,20740,ENSMUSG00000057738,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12688,cg17399859,0.0000149,0.0000138,1.081151352,0.280470133,gain,ns,0.0000396,0.0000234,1.692462941,0.091562479,pos,ns,0.008814015,0.006852641,1.286221561,0.199325554,pos,ns,0.700437021,-0.00032371,0.000235662,-1.373621173,0.170551837,neg,ns,0.35897276,Slitrk2,Slitrk2_threeUTR,X,66657513,66657562,66657561,66657562,50,+,TTTTTCTGCCTATTGAAACATTTTCTATAAACACACACCAGTAGAGGCCG,3' UTR,20,66649318,66661393,12076,1,Slitrk2-202,8195,Slitrk2-202;Slitrk2-201,Slitrk2;Slitrk2,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,3,245450,ENSMUSG00000036790,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10910,cg00900456,0.0000476,0.00000547,8.704101218,1.93E-16,gain,yes,-0.0000157,0.00000929,-1.692418332,0.091570989,neg,ns,0.004537089,0.00272141,1.667183538,0.0964878,pos,ns,1.015527595,-0.000140207,0.0000936,-1.498114767,0.135120986,neg,ns,0.155758013,Pitx1,Pitx1_Exon,13,55828507,55828556,55828507,55828508,50,+,CGGTTCCTCTGGAACGTGGCCTCTAGCTCTTGCAACTGCTGGCTTGTGAA,"Exon (Pitx1-201/Pitx1, exon 2 of 3)",13,55825051,55831425,6375,2,Pitx1-201,2869,Pitx1-201;Pitx1-202,Pitx1;Pitx1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,5,18740,ENSMUSG00000021506,conserved gene and region,13,55828318,55828522,205,*,205,16,0.619512195,0.813895782,0.078048781,8.28E-11,CpGisland,TRUE,U3,Pr-B
6585,cg08460572,-0.0000709,0.0000153,-4.627675676,0.00000544,loss,ns,0.0000441,0.000026,1.692332746,0.091587316,pos,ns,-0.008663343,0.007630572,-1.135346403,0.257107239,neg,ns,0.589885695,-0.000122996,0.000262415,-0.468707634,0.639608052,neg,ns,0.412124645,Gm12129,Gm12129_Intergenic_upstream,11,37798896,37798945,37798944,37798945,50,-,TGTAAGAGCTCATTGTGCAATAAAGTGTCAGAACACTGTTTTTAAACACG,Distal Intergenic,11,38219069,38220215,1147,1,Gm12129-201,-420173,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,11,276941,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13867,cg02399020,-0.00000381,0.00000161,-2.367604903,0.01851731,loss,ns,0.00000462,0.00000273,1.6922781,0.091597742,pos,ns,0.002012613,0.000799907,2.516059445,0.012372441,pos,ns,1.907544618,-0.0000904,0.0000275,-3.286986726,0.001128921,neg,ns,0.96589852,Ola1,Ola1_Intron,2,73140097,73140146,73140097,73140098,50,+,CGGCAGAAACTGTACAGAAAATGGCTATGTGGTAAATTCTCTTCTGGAAC,"Intron (Ola1-201/Ola1, intron 7 of 10)",2,73092801,73214447,121647,2,Ola1-201,74301,Ola1-201;Ola1-206;Ola1-203;Ola1-202,Ola1;Ola1;Ola1;Ola1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,19,67059,ENSMUSG00000027108,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14939,cg04567480,-0.0000103,0.0000147,-0.702381242,0.482968495,loss,ns,0.0000423,0.000025,1.692022178,0.091646583,pos,ns,-0.006374206,0.007319819,-0.870814655,0.384529205,neg,ns,0.41507067,0.000327089,0.000251728,1.299374963,0.19478077,pos,ns,0.734689078,Nr2f1,Nr2f1_threeUTR,13,78188990,78189039,78189038,78189039,50,+,ATTTTTGTTTAAATTTTCACTTCAATTTTAATTCTTGAAGAACAGCCTCG,3' UTR,13,78188973,78199757,10785,2,Nr2f1-201,10718,Nr2f1-201;Nr2f1-205;Nr2f1-203;Nr2f1-202;Nr2f1-204,Nr2f1;Nr2f1;Nr2f1;Nr2f1;Nr2f1,0;0;0;0;1404,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,55,13865,ENSMUSG00000069171,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
10568,cg13266118,-0.0000257,0.0000088,-2.921644919,0.003737664,loss,ns,0.0000253,0.000015,1.691995019,0.091651767,pos,ns,0.006641438,0.004380208,1.516238154,0.130478161,pos,ns,0.884462174,-0.0004078,0.000150635,-2.707207142,0.007161435,neg,ns,0.685908942,Mmp14,Mmp14_Exon,14,54443866,54443915,54443866,54443867,50,+,CGGTTTCCCCATCACGAGGAAATTGTTTGGCCCTGATTCTGGAATCACAA,"Exon (Mmp14-206/Mmp14, exon 10 of 10)",14,54431633,54445364,13732,1,Mmp14-206,12233,Mmp14-201;Mmp14-206;Mmp14-207,Mmp14;Mmp14;Mmp14,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,17387,ENSMUSG00000000957,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10159,cg21539484,0.000136648,0.0000102,13.43737122,9.42E-33,gain,yes,-0.0000292,0.0000173,-1.691953906,0.091659615,neg,ns,0.012049717,0.005061341,2.38073619,0.017881975,pos,ns,1.747584505,-0.000175765,0.000174059,-1.009798382,0.313379417,neg,ns,0.211916678,Gm28308,Gm28308_fiveUTR,6,52204422,52204471,52204470,52204471,50,+,TATGATGAATTATGGAAATGACTGGGACATGTACTTGGTTCCCTCCTACG,5' UTR,6,52163359,52213339,49981,2,Gm28308-201,8868,Gm28308-201;Hoxa3-201;Hoxa3-203;Hoxa5-201;Hoxa6-201,Gm28308;Hoxa3;Hoxa3;Hoxa5;Hoxa6,0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,21,103,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
19876,cg09123630,0.00000895,0.0000033,2.7135877,0.007028157,gain,ns,0.00000948,0.0000056,1.69195053,0.09166026,pos,ns,0.002453936,0.001641156,1.495248026,0.135866991,pos,ns,0.866886041,-0.0000354,0.0000564,-0.626389443,0.531520498,neg,ns,0.933175419,Zmym3,Zmym3_Exon,X,101416386,101416435,101416386,101416387,50,-,CGGGGCCGGAATGGCACAAAGTCCTCATCATTGGGGTCATCTACCATGGC,"Exon (Zmym3-203/Zmym3, exon 5 of 24)",20,101404384,101419798,15415,2,Zmym3-203,3363,Zmym3-203;Zmym3-209;Zmym3-206;Zmym3-201;Zmym3-212;Zmym3-214;Zmym3-210;Zmym3-215;Zmym3-207;Zmym3-202;Zmym3-208;Zmym3-204;Zmym3-205;Zmym3-211;Zmym3-217;Zmym3-216;Zmym3-213,Zmym3;Zmym3;Zmym3;Zmym3;Zmym3;Zmym3;Zmym3;Zmym3;Zmym3;Zmym3;Zmym3;Zmym3;Zmym3;Zmym3;Zmym3;Zmym3;Zmym3,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,7,56364,ENSMUSG00000031310,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6046,cg23629468,0.00000978,0.00000196,4.992889365,0.000000994,gain,yes,0.00000563,0.00000333,1.691536528,0.091739323,pos,ns,0.005453741,0.000974825,5.594586143,4.86E-08,pos,ns,7.313073002,-0.0000629,0.0000335,-1.875226957,0.061701393,neg,ns,0.948414776,Dcun1d1,Dcun1d1_threeUTR,3,35895609,35895658,35895657,35895658,50,+,TTCCTTTAGTGCTACACTGTTGTACTTTTTGTCCCAGCAATTTGAGGGCG,3' UTR,3,35892105,35932334,40230,2,Dcun1d1-203,36676,Dcun1d1-203;Dcun1d1-201;Dcun1d1-212;Dcun1d1-209;Dcun1d1-210;Dcun1d1-214;Dcun1d1-202;Dcun1d1-206,Dcun1d1;Dcun1d1;Dcun1d1;Dcun1d1;Dcun1d1;Dcun1d1;Dcun1d1;Dcun1d1,0;0;0;0;0;0;0;14187,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,3,114893,ENSMUSG00000027708,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1491,cg03587925,-0.000000474,0.00000373,-0.12700396,0.899019603,loss,ns,0.0000107,0.00000634,1.691307302,0.091783122,pos,ns,0.001764706,0.001858056,0.949759092,0.342974517,pos,ns,0.464738147,0.0000632,0.0000639,0.989249842,0.323312415,pos,ns,0.94044804,Gm11819,Gm11819_Intergenic_upstream,4,13248597,13248646,13248645,13248646,50,+,CATACGGGACTCAGTGTGGCCACTGCAATATAACCAGTAAGTAACACACG,Distal Intergenic,4,13444770,13445141,372,1,Gm11819-201,-196124,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,19,22,,NA,mapped to different genes,4,13248547,13248714,168,*,168,12,0.535714286,0.997525977,0.071428571,8.86E-08,CpGisland,TRUE,U15,NS
23281,cg03693556,0.000073,0.0000115,6.328042307,8.68E-10,gain,yes,0.0000331,0.0000196,1.691291533,0.091786136,pos,ns,0.008760332,0.005741307,1.525842854,0.128068574,pos,ns,0.892557427,0.00004,0.000197443,0.202768537,0.839448968,pos,ns,0.753644108,Eri3,Eri3_Intron,4,117647204,117647253,117647204,117647205,50,-,CGAATTGAATTGAGTGTCAGCCGAGAATCTATTACTGAAATTCGGGTGTG,"Intron (Eri3-201/Eri3, intron 7 of 8)",4,117550365,117674297,123933,1,Eri3-201,96839,Eri3-201;Eri3-206;Eri3-203,Eri3;Eri3;Eri3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,82,97,140546,ENSMUSG00000033423,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21187,cg03545606,0.00000499,0.00000785,0.63636746,0.525006521,gain,ns,-0.0000226,0.0000133,-1.691198783,0.091803863,neg,ns,-0.008903895,0.003906379,-2.279321842,0.023327348,neg,ns,1.63213463,0.0000659,0.00013434,0.490596521,0.624058924,pos,ns,0.765751103,Cntn4,Cntn4_Exon,6,106662552,106662601,106662600,106662601,50,+,CACTTTCCCCTACTTTATCAGCAGGATTCAGCTGGTGATTTGATGATCCG,"Exon (Cntn4-205/Cntn4, exon 17 of 20)",6,105677745,106674264,996520,1,Cntn4-205,984807,Cntn4-205;Cntn4-206;Cntn4-202;Cntn4-204;Cntn4-201;Cntn4-211;Cntn4-213,Cntn4;Cntn4;Cntn4;Cntn4;Cntn4;Cntn4;Cntn4,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,269784,ENSMUSG00000064293,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16319,cg12870451,-0.00000599,0.00000522,-1.146728207,0.252378283,loss,ns,0.000015,0.00000888,1.69118584,0.091806338,pos,ns,-0.000682779,0.002600519,-0.262554868,0.793068085,neg,ns,0.100689527,0.0000746,0.0000894,0.834609019,0.404580584,pos,ns,0.786922609,Mrm1,Mrm1_Intergenic_downstream,11,84744763,84744812,84744811,84744812,50,+,TATCATTAGTTTTCATTTTCCGCTCCCCATGCATCAAAAAACTTACAACG,Distal Intergenic,11,84814743,84815390,648,2,Mrm1-203,70578,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,37,42,217038,ENSMUSG00000018405,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9019,cg08911427,-0.0000405,0.00000642,-6.304470291,9.94E-10,loss,yes,-0.0000184,0.0000109,-1.690902856,0.091860443,neg,ns,-0.005045785,0.003195402,-1.579076672,0.115338277,neg,ns,0.938026539,0.0000884,0.00010989,0.804593952,0.42167065,pos,ns,0.849405384,Srf,Srf_Exon,17,46553677,46553726,46553677,46553678,50,+,CGAGTTGAGGCAGGTCTGAATCAGTGCCTTGCCGGTCTCACTGGTGATCA,"Exon (Srf-201/Srf, exon 2 of 7)",17,46548329,46556175,7847,2,Srf-201,2449,Srf-201;Srf-203;Srf-202;Srf-204,Srf;Srf;Srf;Srf,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,11,20807,ENSMUSG00000015605,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
7498,cg11059410,-0.0000131,0.00000787,-1.669303604,0.096066718,loss,ns,0.0000226,0.0000134,1.69083319,0.091873767,pos,ns,0.006186451,0.00391863,1.578727988,0.115418282,pos,ns,0.937725395,0.0000446,0.000134761,0.330924118,0.74092537,pos,ns,0.210146096,Grik4,Grik4_Intron,9,42897099,42897148,42897147,42897148,50,+,ATTCAGAACAAGATTGGGTTATTACAAATTCAGGAGGCACTACACACACG,"Intron (Grik4-202/Grik4, intron 1 of 20)",9,42518135,42944493,426359,2,Grik4-202,47345,Grik4-202,Grik4,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,8,110637,ENSMUSG00000032017,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
11193,cg14550108,-0.0000343,0.00000889,-3.854087331,0.00014122,loss,ns,0.0000255,0.0000151,1.690211056,0.091992822,pos,ns,-0.001109566,0.004423754,-0.250819944,0.802119483,neg,ns,0.095760935,-0.0000457,0.000152133,-0.300075747,0.764320497,neg,ns,0.83045217,Gm13527,Gm13527_Intergenic_upstream,2,56952286,56952335,56952286,56952287,50,-,CGTGTGGTTTAGAAAAATTCATTTATATAGCCGTTTGCCATGTCATGATG,Distal Intergenic,2,57079748,57080438,691,1,Gm13527-201,-127462,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,13,13,227920,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23472,cg01806388,0.00000292,0.00000196,1.491018068,0.136973576,gain,ns,-0.00000563,0.00000333,-1.690182266,0.091998334,neg,ns,-0.002268848,0.000976319,-2.323879835,0.020778192,neg,ns,1.682392235,0.0000927,0.0000336,2.76109507,0.006104139,pos,ns,0.934863662,Clasp1,Clasp1_threeUTR,1,118543183,118543232,118543231,118543232,50,-,TCTGAGCGCTCATATGGCTCCAGGAATGGTGGCATTCCCCATTATCTGCG,3' UTR,1,118389058,118609432,220375,1,Clasp1-201,154125,Clasp1-201;Clasp1-202;Clasp1-204;Clasp1-218;Clasp1-219;Clasp1-208;Clasp1-216;Clasp1-203;Clasp1-214;Clasp1-220;Clasp1-212;Clasp1-206;Clasp1-205;Clasp1-210;Clasp1-224;Clasp1-221;Clasp1-230;Clasp1-226;Clasp1-209;Clasp1-222,Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;-3979;-4745,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,8,76707,ENSMUSG00000064302,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11246,cg11209121,0.000151759,0.0000122,12.44292577,4.20E-29,gain,yes,0.000035,0.0000207,1.689994803,0.092034234,pos,ns,0.024810429,0.006070298,4.087184819,0.0000557,pos,ns,4.254352824,0.000200923,0.000208757,0.962473752,0.33656183,pos,ns,0.477830421,Nr4a2,Nr4a2_Exon,2,57112374,57112423,57112422,57112423,50,+,GTAGCTCTGAGAAGCGGGGCTGGCTCCTTGAGGCGAGGACCCATACTGCG,"Exon (Nr4a2-201/Nr4a2, exon 3 of 8)",2,57106830,57115038,8209,2,Nr4a2-201,2615,Nr4a2-201;Nr4a2-203;Nr4a2-206;Nr4a2-202;Nr4a2-205;Nr4a2-204,Nr4a2;Nr4a2;Nr4a2;Nr4a2;Nr4a2;Nr4a2,0;0;0;0;0;1950,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,25,18227,ENSMUSG00000026826,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
9457,cg14486921,0.0000278,0.00000551,5.041664349,0.000000786,gain,yes,0.0000158,0.00000936,1.689904407,0.09205155,pos,ns,0.00885463,0.002743006,3.228075138,0.001379736,pos,ns,2.860204143,-0.000105064,0.0000943,-1.113776483,0.266237905,neg,ns,0.136714814,Csmd3,Csmd3_fiveUTR,15,48791999,48792048,48792047,48792048,50,+,TTCTGGGATACCACAGCAACCTTGACGAGGACTCAACCATCTCTCCAACG,Promoter (<=1kb),15,47580722,48792063,1211342,2,Csmd3-209,15,Csmd3-204;Csmd3-201;Csmd3-209;Csmd3-205;Csmd3-203,Csmd3;Csmd3;Csmd3;Csmd3;Csmd3,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,16,239420,ENSMUSG00000022311,conserved gene but different region,15,48791819,48792094,276,*,276,17,0.550724638,0.814583333,0.061594203,8.17E-10,CpGisland,TRUE,U13,Hc-P
15855,cg18149408,-0.00000276,0.00000419,-0.657741846,0.511192128,loss,ns,0.000012,0.00000712,1.689861005,0.092059864,pos,ns,0.003333201,0.002086374,1.597604512,0.111149797,pos,ns,0.954091326,-0.000113873,0.0000718,-1.587076206,0.113514817,neg,ns,0.921101889,Mef2c,Mef2c_threeUTR,13,83663715,83663764,83663715,83663716,50,-,CGGGAGGGGGGTATATTTGTGCAGTTGCACATTTGAGTAACTATTTTCTT,3' UTR,13,83504240,83667078,162839,1,Mef2c-201,159475,Mef2c-218;Mef2c-228;Mef2c-201;Mef2c-202;Mef2c-222;Mef2c-223;Mef2c-227;Mef2c-213;Mef2c-214;Mef2c-212;Mef2c-203;Mef2c-219;Mef2c-225;Mef2c-230;Mef2c-211,Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,threeUTR,10,41,17260,ENSMUSG00000005583,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16797,cg18033417,0.00000514,0.0000043,1.194057252,0.233368454,gain,ns,-0.0000124,0.00000731,-1.689819028,0.092067906,neg,ns,-0.004229648,0.002141566,-1.975026024,0.049152139,neg,ns,1.308457581,0.0000495,0.0000736,0.672011257,0.502077048,pos,ns,0.873370292,Pde6d,Pde6d_threeUTR,1,86545748,86545797,86545796,86545797,50,-,TCAAGGACTGCCAGGTATTTGTGGAGTTAGGGATCACAAAGCCAAACTCG,3' UTR,1,86542994,86582547,39554,2,Pde6d-201,36750,Pde6d-201;Pde6d-204;Pde6d-202;Pde6d-205;Pde6d-203,Pde6d;Pde6d;Pde6d;Pde6d;Pde6d,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,2,18582,ENSMUSG00000026239,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23864,cg10052190,-0.00000644,0.00000134,-4.817526677,0.00000228,loss,ns,0.00000384,0.00000227,1.689571241,0.09211539,pos,ns,0.001400267,0.000665177,2.105103013,0.036086748,pos,ns,1.44265225,-0.00000493,0.0000229,-0.21559942,0.829441791,neg,ns,0.043824334,Mosmo,Mosmo_Exon,7,120677770,120677819,120677818,120677819,50,+,TAAACTGACCATCATCTCAGGATGTCTCTTTCTGGCCGCCGATATCTTCG,Promoter (<=1kb),7,120677618,120730638,53021,1,Mosmo-202,152,Mosmo-202;Mosmo-205;Mosmo-201;Mosmo-207,Mosmo;Mosmo;Mosmo;Mosmo,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,6,233812,ENSMUSG00000046096,conserved gene and region,7,120677806,120677975,170,*,170,25,0.741176471,1.111111111,0.147058824,5.22E-24,CpGisland,TRUE,NA,NRS
7710,cg10657277,-0.0000174,0.0000102,-1.713573492,0.087606769,loss,ns,0.0000292,0.0000173,1.689493085,0.092130371,pos,ns,-0.003457858,0.005062396,-0.683047753,0.495086815,neg,ns,0.305318639,0.0000507,0.000174095,0.29118291,0.771106161,pos,ns,0.748545457,Adra1b,Adra1b_Exon,11,43836019,43836068,43836067,43836068,50,+,TGGCATTTTTCAACTCTCCCCAGTGGGCAGGTGCTGATGTGTTGTGGCCG,Promoter (<=1kb),11,43774606,43836332,61727,2,Adra1b-202,264,Adra1b-202;Adra1b-204;Adra1b-201;Adra1b-203,Adra1b;Adra1b;Adra1b;Adra1b,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,5,11548,ENSMUSG00000050541,mapped to different genes,11,43836067,43836760,694,*,694,64,0.691642651,0.77374399,0.09221902,2.41E-46,CpGisland,TRUE,U13,Hc-P
24889,cg20291436,0.000037,0.00000558,6.629004257,1.50E-10,gain,yes,0.000016,0.00000948,1.689483556,0.092132198,pos,ns,0.009239387,0.00277747,3.326547695,0.000985018,pos,ns,3.0065559,-0.000210115,0.0000955,-2.199763305,0.028561487,neg,ns,0.124712723,Pitx2,Pitx2_threeUTR,3,129218777,129218826,129218825,129218826,50,+,CTCGAGCCTGGCCAGCCTGAGACTGAAAGCAAAGCAGCACTCCAGCTTCG,3' UTR,3,129199878,129219590,19713,1,Pitx2-207,18899,Pitx2-207;Pitx2-201;Pitx2-203;Pitx2-204;Pitx2-208;Pitx2-202;Pitx2-206,Pitx2;Pitx2;Pitx2;Pitx2;Pitx2;Pitx2;Pitx2,0;0;0;0;0;0;4502,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,7,24,18741,ENSMUSG00000028023,mapped to different genes,3,129218825,129218932,108,*,108,13,0.694444444,0.998577525,0.12037037,2.57E-11,CpGisland,TRUE,U13,Hc-P
1512,cg26047375,-0.0000305,0.0000184,-1.651685939,0.099611132,loss,ns,0.0000529,0.0000313,1.689297669,0.092167838,pos,ns,0.032937677,0.00917608,3.589515119,0.000384968,pos,ns,3.414574845,-0.000985553,0.000315565,-3.123142554,0.00195824,neg,ns,0.859483435,Gm11819,Gm11819_Intergenic_upstream,4,13399095,13399144,13399143,13399144,50,+,TGGAGTCTATTGATTATTCAAGTTGGCAGTCAATTTTATAGGGCACCCCG,Distal Intergenic,4,13444770,13445141,372,1,Gm11819-201,-45626,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,19,22,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19384,cg02052649,-0.0000234,0.00000521,-4.485528337,0.0000103,loss,ns,0.000015,0.00000886,1.689291298,0.09216906,pos,ns,-0.002235853,0.002594359,-0.861813217,0.389456451,neg,ns,0.409541098,0.000145799,0.0000892,1.634156965,0.103240979,pos,ns,0.919427856,Foxp1,Foxp1_Intron,6,99190001,99190050,99190001,99190002,50,+,CGTTAAATACAGTCAGTGTCAGGAAGATGCGTCCCACTCATAAAGCAGCG,"Intron (Foxp1-206/Foxp1, intron 2 of 17)",6,98925338,99266515,341178,2,Foxp1-206,76465,Foxp1-206;Foxp1-204;Foxp1-220;Foxp1-221;Foxp1-222;Foxp1-223;Foxp1-202;Foxp1-211;Foxp1-212;Foxp1-224,Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,87,108655,ENSMUSG00000030067,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13444,cg21883915,-0.00000278,0.00000102,-2.731510169,0.006665681,loss,ns,0.00000292,0.00000173,1.689168668,0.092192578,pos,ns,0.000809615,0.000506029,1.599940114,0.110630474,pos,ns,0.956125226,0.00000385,0.0000174,0.22144828,0.824889201,pos,ns,0.973094568,Sltm,Sltm_Exon,9,70584002,70584051,70584002,70584003,50,-,CGGGAACGCTTACAGAGAGAGAGAGAGCGCCTAGAAATTGAAAGGCAAAA,"Exon (Sltm-206/Sltm, exon 15 of 21)",9,70542754,70592234,49481,1,Sltm-206,41248,Sltm-206;Sltm-203;Sltm-201;Sltm-208;Sltm-204;Sltm-207,Sltm;Sltm;Sltm;Sltm;Sltm;Sltm,0;0;0;0;8594;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,11,66660,ENSMUSG00000032212,mapped to different genes,9,70583933,70584030,98,*,98,10,0.489795918,2.058823529,0.102040816,5.13E-08,CpGisland,TRUE,U10,Tr-S
17216,cg23999281,-0.00000375,0.00000311,-1.206737658,0.228453233,loss,ns,0.00000893,0.00000529,1.68900789,0.092223419,pos,ns,0.001743782,0.001548596,1.12604054,0.261019325,pos,ns,0.583327337,-0.0000253,0.0000533,-0.475463115,0.634791765,neg,ns,0.936478048,Gm5356,Gm5356_Intergenic_upstream,8,89241824,89241873,89241872,89241873,50,-,ACAAAACATTAATCTTCTTGCCAGCAATTATAAAGGATACAGTGATGTCG,Distal Intergenic,8,89186946,89187560,615,2,Gm5356-201,-54313,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,23,23,384862,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26424,cg22558745,-0.0000304,0.0000104,-2.932881314,0.003608584,loss,ns,0.0000297,0.0000176,1.688729071,0.092276924,pos,ns,0.006633866,0.00515455,1.286992351,0.1990571,pos,ns,0.701022327,-0.000462524,0.000177265,-2.609228149,0.009514768,neg,ns,0.801573008,Gm6074,Gm6074_Intergenic_upstream,3,147832482,147832531,147832530,147832531,50,+,ATAATGGATTGACAAAAGCAAAACATCATTAACTTGAATCTACAAAGTCG,Distal Intergenic,3,147192468,147192918,451,2,Gm6074-201,-639564,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,3,606715,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18140,cg05972494,0.00000528,0.00000305,1.728424113,0.084907938,gain,ns,-0.00000876,0.00000519,-1.688686822,0.092285034,neg,ns,-0.001882366,0.001519824,-1.238542349,0.216452066,neg,ns,0.664638265,0.00006,0.0000523,1.148844892,0.251505596,pos,ns,0.933930588,Hlcs,Hlcs_Intron,16,94227793,94227842,94227793,94227794,50,+,CGGCTGTTTCTCTACTGTGAGGTCACTCAGCCATTAAATTAGTTCCAGCC,"Intron (Hlcs-209/Hlcs, intron 2 of 6)",16,94128882,94246085,117204,2,Hlcs-209,18243,Hlcs-209;Hlcs-202;Hlcs-201;Hlcs-205;Hlcs-208;Hlcs-204,Hlcs;Hlcs;Hlcs;Hlcs;Hlcs;Hlcs,0;0;0;0;0;62428,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,3,110948,ENSMUSG00000040820,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15481,cg09834191,0.00000796,0.0000136,0.587309716,0.557423229,gain,ns,-0.0000389,0.000023,-1.688634972,0.092294987,neg,ns,-0.004970489,0.00674818,-0.736567338,0.461942534,neg,ns,0.335412047,-0.000300015,0.000232069,-1.292782086,0.197049112,neg,ns,0.604795129,Pdgfc,Pdgfc_Intron,3,81038213,81038262,81038213,81038214,50,+,CGACTTAATCCTGCATAGGAAATGAGAATTACTTTCAGCTTTCAAGTGTA,"Intron (Pdgfc-201/Pdgfc, intron 1 of 5)",3,81036416,81214040,177625,1,Pdgfc-201,1797,Pdgfc-201;Pdgfc-202;Pdgfc-203,Pdgfc;Pdgfc;Pdgfc,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,2,54635,ENSMUSG00000028019,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
15036,cg06785707,0.0000456,0.00000496,9.20009573,5.43E-18,gain,yes,-0.0000142,0.00000842,-1.68861798,0.092298249,neg,ns,0.007065721,0.002466668,2.864479943,0.004462056,pos,ns,2.350465025,-0.000091,0.0000848,-1.072493967,0.284332409,neg,ns,0.140304155,Ntrk3,Ntrk3_Exon,7,78577640,78577689,78577640,78577641,50,+,CGGCCGCCGGCAATTGATCTCAGTCTTGCTGCAGACACAATTTGCAGGGC,Promoter (<=1kb),7,78175959,78578408,402450,2,Ntrk3-201,719,Ntrk3-201;Ntrk3-206;Ntrk3-205;Ntrk3-202;Ntrk3-204;Ntrk3-210;Ntrk3-214;Ntrk3-212;Ntrk3-220;Ntrk3-218,Ntrk3;Ntrk3;Ntrk3;Ntrk3;Ntrk3;Ntrk3;Ntrk3;Ntrk3;Ntrk3;Ntrk3,0;0;0;0;0;0;0;0;1009;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,15,18213,ENSMUSG00000059146,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12454,cg07617136,-0.00000502,0.0000023,-2.183346415,0.029759931,loss,ns,0.00000659,0.0000039,1.688529183,0.092315297,pos,ns,0.000277513,0.001143691,0.242646801,0.808439484,pos,ns,0.092352484,-0.000021,0.0000393,-0.532757281,0.594583288,neg,ns,0.949042789,Gm13577,Gm13577_Intergenic_downstream,2,64366489,64366538,64366537,64366538,50,-,ACCTTTAGAATCCAAAATATTAAGCTATGTTTCTTAGAGATAATAACTCG,Distal Intergenic,2,64474745,64474949,205,2,Gm13577-201,108460,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,17,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27476,cg05185640,-0.00000609,0.00000323,-1.887064867,0.060085777,loss,ns,-0.00000925,0.00000548,-1.687877212,0.092440549,neg,ns,-0.002200687,0.001605648,-1.370591555,0.171493904,neg,ns,0.765751314,0.00000757,0.0000552,0.137154971,0.890997337,pos,ns,0.964021307,Pbx1,Pbx1_Intron,1,168342028,168342077,168342028,168342029,50,+,CGGAATTCATTAGGCTCAACACTGCAGGGCCCGCTCTCTGTGCGTTAATG,"Intron (Pbx1-208/Pbx1, intron 2 of 7)",1,168119364,168432270,312907,2,Pbx1-208,90193,Pbx1-208;Pbx1-205;Pbx1-206;Pbx1-201;Pbx1-202;Pbx1-204,Pbx1;Pbx1;Pbx1;Pbx1;Pbx1;Pbx1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,84,18514,ENSMUSG00000052534,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24340,cg11999944,-0.0000439,0.0000376,-1.16678766,0.244192898,loss,ns,0.000107816,0.0000639,1.687735069,0.092467874,pos,ns,0.009172612,0.018715198,0.490115667,0.624398738,pos,ns,0.204537983,-0.000258388,0.000643614,-0.401464619,0.68835469,neg,ns,0.398959358,Fgf14,Fgf14_Exon,14,124676565,124676614,124676565,124676566,50,+,CGTTCCTTTGCTGAAAATGTTCCAAAGAAACCACATTGATTTGGGCGAAA,Promoter (<=1kb),14,123977907,124677127,699221,2,Fgf14-202,513,Fgf14-202,Fgf14,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,9,14169,ENSMUSG00000025551,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
10013,cg02545516,-0.000108747,0.0000135,-8.069349881,1.57E-14,loss,yes,0.0000386,0.0000229,1.687635381,0.092487042,pos,ns,-0.020848748,0.006707422,-3.108310182,0.002056067,neg,ns,2.686962775,0.000850239,0.000230668,3.685991014,0.000268844,pos,ns,0.765863057,Ppargc1a,Ppargc1a_Intergenic_upstream,5,51853816,51853865,51853816,51853817,50,+,CGTAATGCAGATGGTAGTAATAACAATTACCCAAGATAAGCCCTTGCAAT,Distal Intergenic,5,51495780,51567726,71947,2,Ppargc1a-202,-286090,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,13,19017,ENSMUSG00000029167,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
21976,cg10300862,0.000000567,0.0000478,0.011851943,0.990551363,gain,ns,-0.000137066,0.0000812,-1.687049922,0.092599678,neg,ns,-0.068084879,0.023802277,-2.860435561,0.004517858,neg,ns,2.345067402,0.00174448,0.000818558,2.131161323,0.033862348,pos,ns,0.734390713,Pde4d,Pde4d_threeUTR,13,109933868,109933917,109933916,109933917,50,+,TTTAAAAGGATGCTTAATCGGGAGCTCACCCATCTCTCTGAAATGAGTCG,3' UTR,13,108654177,109951474,1297298,1,Pde4d-209,1279691,Pde4d-209;Pde4d-220;Pde4d-208;Pde4d-218;Pde4d-205;Pde4d-202;Pde4d-213;Pde4d-201;Pde4d-206;Pde4d-207;Pde4d-216;Pde4d-204;Pde4d-203;Pde4d-219,Pde4d;Pde4d;Pde4d;Pde4d;Pde4d;Pde4d;Pde4d;Pde4d;Pde4d;Pde4d;Pde4d;Pde4d;Pde4d;Pde4d,0;0;0;0;0;0;0;0;0;0;0;0;0;-1395,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,7,238871,ENSMUSG00000021699,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12782,cg09254098,-0.0000023,0.00000114,-2.01654553,0.044604996,loss,ns,-0.00000327,0.00000194,-1.686496937,0.092706168,neg,ns,-0.001341312,0.000567197,-2.364809249,0.018655108,neg,ns,1.729202242,0.0000257,0.0000195,1.317896196,0.188511446,pos,ns,0.033246851,Jmjd1c,Jmjd1c_Intron,10,67185655,67185704,67185703,67185704,50,+,ACTCCATCAGCACCTGTGACGGGGGATTAGTTACAGTTTACAGAGCACCG,"Intron (Jmjd1c-209/Jmjd1c, intron 2 of 2)",10,67096125,67191748,95624,1,Jmjd1c-209,89530,Jmjd1c-209;Jmjd1c-210;Jmjd1c-211;Jmjd1c-201;Jmjd1c-212;Jmjd1c-205;Jmjd1c-206;Jmjd1c-208,Jmjd1c;Jmjd1c;Jmjd1c;Jmjd1c;Jmjd1c;Jmjd1c;Jmjd1c;Jmjd1c,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,9,108829,ENSMUSG00000037876,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
12277,cg15677623,-0.00000569,0.00000582,-0.977640194,0.329014613,loss,ns,0.0000167,0.0000099,1.686326888,0.092738935,pos,ns,0.000658083,0.002899056,0.226999127,0.820574042,pos,ns,0.085882226,0.0000205,0.0000997,0.205172394,0.837572092,pos,ns,0.887651807,Xkr6,Xkr6_Exon,14,63818843,63818892,63818891,63818892,50,+,TCCCTGATGTCCCTGGCTTGGGTGCTAGCCTCCTATCACAAGCTGCTGCG,"Exon (Xkr6-201/Xkr6, exon 3 of 3)",14,63606503,63820809,214307,1,Xkr6-201,212340,Xkr6-201;Xkr6-202,Xkr6;Xkr6,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,11,219149,ENSMUSG00000035067,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2738,cg16501308,0.0000066,0.00000338,1.952582815,0.0517688,gain,ns,-0.00000968,0.00000574,-1.686255301,0.092752732,neg,ns,0.002100511,0.001681899,1.248892497,0.212646657,pos,ns,0.67234144,-0.0000341,0.0000578,-0.588738526,0.556465417,neg,ns,0.476822938,Klhl14,Klhl14_Exon,18,21651981,21652030,21652029,21652030,50,+,GCAGCACCAGGTTGTTGATGGCCCGGGGGCTGGTCAGCAGCTTGTCGTCG,Promoter (<=1kb),18,21550377,21652368,101992,2,Klhl14-201,338,Klhl14-201;Klhl14-202,Klhl14;Klhl14,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,38,225266,ENSMUSG00000042514,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
8810,cg27250552,-0.0000164,0.0000108,-1.519985717,0.129533816,loss,ns,-0.0000309,0.0000183,-1.686146112,0.092773779,neg,ns,-0.018426378,0.005371321,-3.430511728,0.000684094,neg,ns,3.164883938,0.000184344,0.000184719,0.997968814,0.319072817,pos,ns,0.766392497,Gm48517,Gm48517_Intergenic_upstream,12,45829747,45829796,45829747,45829748,50,+,CGACTTATATTTGTCTGTGAATCAAGCTGTCATTTTTGTTCTGCCAGAGT,Distal Intergenic,12,45572431,45573287,857,2,Gm48517-201,-256460,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,3,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15051,cg10529588,0.000000162,0.00000269,0.060265884,0.951982706,gain,ns,0.00000771,0.00000457,1.68600897,0.092800219,pos,ns,0.002261492,0.001339198,1.688691101,0.092284212,pos,ns,1.034872591,-0.000100616,0.0000461,-2.184701395,0.029659397,neg,ns,0.93880143,Gphn,Gphn_Exon,12,78637461,78637510,78637509,78637510,50,-,CTAAATCCTGAAGATGACCTCTTACCAGGGAAGATTCGAGACAGCAATCG,"Exon (Gphn-201/Gphn, exon 18 of 24)",12,78226379,78684772,458394,1,Gphn-201,411082,Gphn-201;Gphn-202,Gphn;Gphn,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,11,268566,ENSMUSG00000047454,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12387,cg20857631,-0.0000494,0.0000229,-2.156115772,0.03184364,loss,ns,0.0000656,0.0000389,1.685700127,0.092859786,pos,ns,0.037691019,0.011397612,3.306922354,0.001054126,pos,ns,2.977107447,-0.001287151,0.000391963,-3.283859749,0.001141091,neg,ns,0.387489058,Ctnna3,Ctnna3_Exon,10,64088494,64088543,64088542,64088543,50,-,AAAATCTCTTGACCAATAAATGTGAGCTTGTTGGAATCCAGGTTGAGGCG,"Exon (Lrrtm3-201/Lrrtm3, exon 2 of 3)",10,63430098,65002965,1572868,1,Ctnna3-203,658396,Ctnna3-203;Ctnna3-202;Ctnna3-201;Lrrtm3-201;Lrrtm3-202;Lrrtm3-204;Lrrtm3-203,Ctnna3;Ctnna3;Ctnna3;Lrrtm3;Lrrtm3;Lrrtm3;Lrrtm3,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,11,216033,ENSMUSG00000060843,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
5342,cg03012457,0.0000163,0.000012,1.354626431,0.176523047,gain,ns,0.0000344,0.0000204,1.685681265,0.092863425,pos,ns,-0.009093296,0.005973095,-1.522375947,0.128934296,neg,ns,0.889631548,0.000701984,0.000205414,3.417409025,0.000716615,pos,ns,0.120432953,Fam53a,Fam53a_Intergenic_downstream,5,33534545,33534594,33534593,33534594,50,+,CCCTCTTAATCTGTATTTTACGAGTGAGAAGGTTTGCATTATGCAAATCG,Distal Intergenic,5,33600356,33628912,28557,2,Fam53a-203,94318,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,13,13,74504,ENSMUSG00000037339,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
22959,cg12584921,-0.00000129,0.00000177,-0.732096769,0.464662613,loss,ns,0.00000505,0.000003,1.685364814,0.092924493,pos,ns,0.00111184,0.000878515,1.265589068,0.206610604,pos,ns,0.684847393,-0.0000565,0.0000302,-1.869601419,0.062481729,neg,ns,0.964395301,Gm5357,Gm5357_Intergenic_upstream,8,116384611,116384660,116384611,116384612,50,-,CGGGGGCTCATTAGTATTGTATTAGGGCTGCATGGGGAAACAGATAATGG,Distal Intergenic,8,116489186,116491109,1924,1,Gm5357-201,-104575,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,15,15,384868,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7037,cg08582276,0.0000173,0.00000747,2.318455318,0.021074889,gain,ns,0.0000214,0.0000127,1.685266476,0.092943476,pos,ns,-0.002923045,0.003718794,-0.786019757,0.432456302,neg,ns,0.364057769,0.000139102,0.000127889,1.087674317,0.277583833,pos,ns,0.116650308,Tfap2a,Tfap2a_Intergenic_downstream,13,40713266,40713315,40713314,40713315,50,-,GACTTCTCAAATGTCAAATCCCTTCTATTTTAAATATTATTTCAGCTGCG,Distal Intergenic,13,40716724,40728944,12221,2,Tfap2a-209,15678,Tfap2a-201;Tfap2a-202;Tfap2a-205;Tfap2a-203;Tfap2a-209;Tfap2a-208;Tfap2a-206,Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a,0;0;0;0;0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,15,57,21418,ENSMUSG00000021359,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
22031,cg21202493,-0.00000477,0.00000659,-0.724371905,0.469383773,loss,ns,0.0000189,0.0000112,1.685068427,0.092981718,pos,ns,-0.005772612,0.003277831,-1.761107223,0.079206113,neg,ns,1.101241297,0.000188671,0.000112724,1.67374004,0.095190348,pos,ns,0.846809503,Elavl4,Elavl4_Intron,4,110227665,110227714,110227665,110227666,50,+,CGTGCCACTGATTATAAATAGTCCATCAGCTCTGCCATGTGTCATCAGCC,"Intron (Elavl4-204/Elavl4, intron 2 of 6)",4,110203722,110287527,83806,2,Elavl4-204,59813,Elavl4-204;Elavl4-201;Elavl4-203;Elavl4-202;Elavl4-205;Elavl4-206;Elavl4-207;Elavl4-211;Elavl4-208;Elavl4-210;Elavl4-212,Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,36,15572,ENSMUSG00000028546,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23014,cg10587537,0.000109243,0.00000946,11.54244426,7.04E-26,gain,yes,-0.0000271,0.0000161,-1.685027518,0.092989619,neg,ns,0.052141588,0.004710568,11.06906604,3.20E-24,pos,yes,23.49420525,-0.000929175,0.000161996,-5.735790884,2.31E-08,neg,yes,0.292344932,Mettl23,Mettl23_threeUTR,11,116850303,116850352,116850351,116850352,50,-,CACGCCACCTTAACAGCTAACCAGCATTACTCAACTGCTACACAACTGCG,3' UTR,11,116843555,116850360,6806,1,Mettl23-206,6748,Mettl23-201;Mettl23-206;Mettl23-202;Mettl23-207;Mettl23-208;Mettl23-203;Mettl23-204;Mettl23-205;Mfsd11-209;Mfsd11-204;Mfsd11-207;Mfsd11-208;Mfsd11-205;Mfsd11-201;Mfsd11-211;Mfsd11-203;Mfsd11-202;Mfsd11-212;Srsf2-201;Srsf2-203;Srsf2-204;Srsf2-202;Srsf2-206;Srsf2-205,Mettl23;Mettl23;Mettl23;Mettl23;Mettl23;Mettl23;Mettl23;Mettl23;Mfsd11;Mfsd11;Mfsd11;Mfsd11;Mfsd11;Mfsd11;Mfsd11;Mfsd11;Mfsd11;Mfsd11;Srsf2;Srsf2;Srsf2;Srsf2;Srsf2;Srsf2,7025;0;6742;6718;6630;6628;6628;0;0;-2943;-3122;-3410;-3427;-3468;-3477;-3543;-3674;-3726;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,4,74319,ENSMUSG00000090266,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U4,Pr-F
9972,cg19960246,-0.000000547,0.00000404,-0.135475306,0.892324013,loss,ns,0.0000116,0.00000687,1.684703016,0.093052309,pos,ns,0.00555457,0.002011261,2.761734792,0.006092484,pos,ns,2.21520558,-0.000205321,0.0000692,-2.968484666,0.003226025,neg,ns,0.896305023,Satb1,Satb1_Intron,17,51766578,51766627,51766626,51766627,50,+,ACAGAATTTTACATTCCATGAGAGATTACGGTGGCCTGATGTATGACACG,"Intron (Satb1-208/Satb1, intron 9 of 10)",17,51736187,51832672,96486,2,Satb1-208,66045,Satb1-208;Satb1-213;Satb1-204;Satb1-214;Satb1-203;Satb1-211;Satb1-207,Satb1;Satb1;Satb1;Satb1;Satb1;Satb1;Satb1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,28,36,20230,ENSMUSG00000023927,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11913,cg23653728,0.000127312,0.0000224,5.685430221,3.01E-08,gain,yes,-0.0000641,0.000038,-1.684677812,0.09305718,neg,ns,0.017689421,0.011145046,1.587200265,0.113486719,pos,ns,0.94505496,-0.000575608,0.000383277,-1.50180639,0.134165012,neg,ns,0.200254513,Tank,Tank_Intergenic_downstream,2,61656474,61656523,61656522,61656523,50,-,GCAGCATTTGAGGCAGCAGCGTTCGCCTGCTGAACGGTGACAGATTGGCG,Downstream (2-3kb),2,61643831,61649977,6147,1,Tank-211,12692,Tank-205;Tank-201;Tank-206;Tank-203;Tank-204;Tank-202;Tank-208,Tank;Tank;Tank;Tank;Tank;Tank;Tank,0;0;0;0;0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,16,17,21353,ENSMUSG00000064289,mapped to different genes,2,61656429,61656917,489,*,489,60,0.707566462,0.985887097,0.122699387,1.21E-51,CpGisland,TRUE,U3,Pr-B
17952,cg21849748,0.0000322,0.00000745,4.320839626,0.000021,gain,ns,0.0000213,0.0000127,1.684626991,0.093067001,pos,ns,0.005287151,0.003706903,1.426298876,0.154788365,pos,ns,0.810261686,-0.000000819,0.00012748,-0.00642749,0.994875774,neg,ns,0.565182827,Runx1,Runx1_Intron,16,92762078,92762127,92762126,92762127,50,+,AGGAGACCATATGATATCTCTCAGTGACTCTCCTGCATGCCAGGAACACG,"Intron (Runx1-201/Runx1, intron 2 of 7)",16,92601466,92826149,224684,2,Runx1-201,64022,Runx1-201;Runx1-204,Runx1;Runx1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,10,12394,ENSMUSG00000022952,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27556,cg25101569,-0.0000158,0.00000638,-2.482886037,0.013561051,loss,ns,0.0000183,0.0000108,1.684343309,0.093121841,pos,ns,-0.003324212,0.003176728,-1.046426249,0.296179498,neg,ns,0.528445008,0.000174557,0.000109247,1.597809374,0.111104169,pos,ns,0.894263141,Tshz2,Tshz2_Intron,2,169892605,169892654,169892653,169892654,50,-,CTATAATTTCTCCTTGCATTTATAATTACTGTCATAGACTGCACACCTCG,"Intron (Tshz2-202/Tshz2, intron 2 of 2)",2,169633013,169913093,280081,1,Tshz2-202,259592,Tshz2-202;Tshz2-201;Tshz2-203;Tshz2-205;Tshz2-204,Tshz2;Tshz2;Tshz2;Tshz2;Tshz2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,21,30,228911,ENSMUSG00000047907,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17143,cg20416844,-0.0000995,0.0000114,-8.738209497,1.52E-16,loss,yes,0.0000326,0.0000193,1.684206888,0.093148222,pos,ns,0.024196491,0.005667938,4.269011451,0.0000261,pos,ns,4.582868011,-0.001427778,0.00019492,-7.324944953,2.08E-12,neg,yes,0.311136185,Nrxn3,Nrxn3_Intron,12,88747100,88747149,88747100,88747101,50,+,CGTGTGCAGATGCAGAAGTGGCTCAATTGATGACCTGTCTTCTGGAGCAC,"Intron (Nrxn3-209/Nrxn3, intron 1 of 7)",12,88722876,89261571,538696,1,Nrxn3-209,24224,Nrxn3-209;Nrxn3-204;Nrxn3-213;Nrxn3-208;Nrxn3-206;Nrxn3-212,Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,39,18191,ENSMUSG00000066392,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7821,cg27078112,-0.00000638,0.0000108,-0.588339681,0.556732704,loss,ns,-0.000031,0.0000184,-1.683934764,0.093200864,neg,ns,-0.00206853,0.005397477,-0.383240172,0.701804367,neg,ns,0.153783934,-0.000255819,0.000185619,-1.378195804,0.169136736,neg,ns,0.679626477,Gm12455,Gm12455_Intergenic_downstream,4,44451027,44451076,44451075,44451076,50,-,CATTTACTGTAAGTGCTGCTGATGAGCAGAAATTGATGGCAGTCCCAGCG,Distal Intergenic,4,44382922,44383337,416,1,Gm12455-201,68154,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,15,15,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1852,cg07026473,0.00000022,0.00000567,0.038722111,0.969136869,gain,ns,-0.0000162,0.00000963,-1.683738239,0.093238896,neg,ns,0.0000951,0.002822124,0.033684951,0.973150058,pos,ns,0.011820187,-0.0000402,0.0000971,-0.414636427,0.678694858,neg,ns,0.893325305,Gli3,Gli3_Intron,13,15596948,15596997,15596996,15596997,50,-,ACACAATAATACAAATATTTTGATCAAACATTTTCTCCAGCTGTTGAACG,"Intron (Gli3-202/Gli3, intron 3 of 11)",13,15463235,15715091,251857,1,Gli3-202,133713,Gli3-202;Gli3-204;Gli3-203;Gli3-201,Gli3;Gli3;Gli3;Gli3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,19,21,14634,ENSMUSG00000021318,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14947,cg17588371,0.0000285,0.000009,3.169790553,0.00167787,gain,ns,-0.0000258,0.0000153,-1.683670572,0.093251994,neg,ns,0.00470619,0.004480865,1.050286215,0.294404609,pos,ns,0.531055395,-0.0000767,0.000154097,-0.49758306,0.619130703,neg,ns,0.267021021,Nr2f1,Nr2f1_fiveUTR,13,78196442,78196491,78196490,78196491,50,-,GCTTTCAACTGCAAAAACACTGGATTCATTAACCATCTGAATGCAAAACG,5' UTR,13,78188973,78199757,10785,2,Nr2f1-201,3266,Nr2f1-201;Nr2f1-205;Nr2f1-203;Nr2f1-202;Nr2f1-206,Nr2f1;Nr2f1;Nr2f1;Nr2f1;Nr2f1,0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,8,55,13865,ENSMUSG00000069171,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
4237,cg12172533,-0.0000066,0.00000561,-1.175564008,0.240671202,loss,ns,-0.000016,0.00000953,-1.683355187,0.093313061,neg,ns,-0.000553785,0.002792589,-0.19830509,0.842936352,neg,ns,0.074205217,-0.0000688,0.000096,-0.716217419,0.474396288,neg,ns,0.946995154,Rfx3,Rfx3_Exon,19,27806848,27806897,27806896,27806897,50,-,ATGTTTGCCACAATTTTTCTATCAGGCTAAATTGAAGATTCACAACAACG,"Exon (Rfx3-202/Rfx3, exon 11 of 18)",19,27761721,27982948,221228,2,Rfx3-202,176051,Rfx3-202;Rfx3-201;Rfx3-208;Rfx3-203;Rfx3-204;Rfx3-206;Rfx3-205,Rfx3;Rfx3;Rfx3;Rfx3;Rfx3;Rfx3;Rfx3,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,15,19726,ENSMUSG00000040929,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9,cg03306705,-0.00000942,0.00000277,-3.402675854,0.000754903,loss,ns,-0.00000791,0.0000047,-1.683286066,0.093326449,neg,ns,-0.00168177,0.001377543,-1.220847518,0.223071512,neg,ns,0.651555888,-0.0000363,0.0000474,-0.765917838,0.444307973,neg,ns,0.954599798,Fam171a1,Fam171a1_Exon,2,3223497,3223546,3223497,3223498,50,-,CGTATCACACGGTGTTTCTTTTGGCCATTTTAGGAGGAATGGCTTTCATA,"Exon (Fam171a1-202/Fam171a1, exon 7 of 8)",2,3114224,3227250,113027,1,Fam171a1-202,109273,Fam171a1-202;Fam171a1-204;Fam171a1-203;Fam171a1-201,Fam171a1;Fam171a1;Fam171a1;Fam171a1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,269233,ENSMUSG00000050530,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21491,cg11699576,0.000001,0.00000591,0.169298464,0.865672303,gain,ns,0.0000169,0.00001,1.683232669,0.093336793,pos,ns,0.001236823,0.00293939,0.420775472,0.674210595,pos,ns,0.171204427,0.0000778,0.000101085,0.769447473,0.442213592,pos,ns,0.719525616,Bcl11b,Bcl11b_Intron,12,107952465,107952514,107952513,107952514,50,+,TTTGGCAACGCCACAGAAGCAAGCTTAAGACTAATTCCAGCATGCGGACG,"Intron (Bcl11b-201/Bcl11b, intron 3 of 3)",12,107910403,108003602,93200,2,Bcl11b-201,51088,Bcl11b-201;Bcl11b-202;Bcl11b-203,Bcl11b;Bcl11b;Bcl11b,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,39,58208,ENSMUSG00000048251,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20016,cg09333601,-0.00000565,0.00000391,-1.444449785,0.149622442,loss,ns,-0.0000112,0.00000664,-1.683168661,0.093349193,neg,ns,0.000525557,0.00194675,0.269966539,0.787365622,pos,ns,0.103823551,-0.0000972,0.0000669,-1.451856176,0.147552886,neg,ns,0.91321079,Hdac5,Hdac5_threeUTR,11,102195735,102195784,102195735,102195736,50,+,CGGCACACCTTGTTGAATGTGTGACTTTTTGTTTTTAATAGAAAAAATAA,3' UTR,11,102194432,102230166,35735,2,Hdac5-203,34382,G6pc3-201;G6pc3-202;G6pc3-204;G6pc3-205;G6pc3-203;G6pc3-206;G6pc3-207;Hdac5-203;Hdac5-201;Hdac5-211;Hdac5-215;Hdac5-214;Hdac5-218;Hdac5-216;Hdac5-205;Hdac5-202;Hdac5-204;Hdac5-212;Hdac5-213;Hdac5-219;Hdac5-207;Hdac5-210,G6pc3;G6pc3;G6pc3;G6pc3;G6pc3;G6pc3;G6pc3;Hdac5;Hdac5;Hdac5;Hdac5;Hdac5;Hdac5;Hdac5;Hdac5;Hdac5;Hdac5;Hdac5;Hdac5;Hdac5;Hdac5;Hdac5,6115;6066;5980;5909;3926;3716;3710;0;0;0;0;0;0;0;0;0;0;2295;3111;3709;4573;5032,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,3,15184,ENSMUSG00000008855,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1693,cg07715243,-0.00000556,0.00000193,-2.876374801,0.004301553,loss,ns,0.00000552,0.00000328,1.683024259,0.093377173,pos,ns,0.002104618,0.000961649,2.188550419,0.029375416,pos,ns,1.532015976,0.00000941,0.0000331,0.284661108,0.776093855,pos,ns,0.948291771,Tle4,Tle4_Intron,19,14590439,14590488,14590439,14590440,50,+,CGCTGCTCCACCATGCTTCGGCAGTTTTGCTTTATTTGCTCCATGATGGG,"Intron (Tle4-201/Tle4, intron 4 of 19)",19,14448150,14598051,149902,2,Tle4-201,7563,Tle4-201;Tle4-202;Tle4-203,Tle4;Tle4;Tle4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,29,21888,ENSMUSG00000024642,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6570,cg12093852,-0.0000366,0.00000801,-4.571541448,0.000007,loss,ns,0.0000229,0.0000136,1.683017913,0.093378402,pos,ns,0.003281852,0.003986524,0.823236507,0.411006354,pos,ns,0.386151464,-0.00014141,0.000137096,-1.031464863,0.303126923,neg,ns,0.598906739,Rpl31-ps15,Rpl31-ps15_Intergenic_downstream,3,37769438,37769487,37769438,37769439,50,-,CGCTGGCCTGCTATTTTTATAGAACCGTTACATAATACAATCTATTAAAG,Distal Intergenic,3,37734730,37735104,375,1,Rpl31-ps15-201,34757,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,626367,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U5,En-Sd
22355,cg22509731,-0.000000935,0.00000193,-0.484741226,0.628202251,loss,ns,-0.00000551,0.00000328,-1.682939977,0.093393506,neg,ns,-0.001300995,0.000959737,-1.355574023,0.176221498,neg,ns,0.753941112,0.0000105,0.000033,0.318242495,0.750515285,pos,ns,0.938363741,Jagn1,Jagn1_threeUTR,6,113447456,113447505,113447504,113447505,50,-,CATTAGCTACCTGGTGCTCTCCATGATCAGCATGGGACTCTTTTCCATCG,3' UTR,6,113442569,113448229,5661,1,Jagn1-201,4887,Jagn1-201;Jagn1-203;Jagn1-202,Jagn1;Jagn1;Jagn1,0;4861;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,67767,ENSMUSG00000051256,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7766,cg04828338,-0.00000029,0.00000226,-0.128398404,0.897916951,loss,ns,0.00000647,0.00000384,1.682845043,0.093411907,pos,ns,0.002233982,0.001125961,1.984067019,0.048130019,pos,ns,1.317583965,-0.000118752,0.0000387,-3.06680621,0.002354247,neg,ns,0.946034458,Arhgap15,Arhgap15_Intron,2,44208280,44208329,44208328,44208329,50,+,GTTCAGAACTCATACAGATTTACAGCTTTCTCCGCCAGCTGCTAATTACG,"Intron (Arhgap15-203/Arhgap15, intron 11 of 14)",2,43748824,44395953,647130,1,Arhgap15-203,459456,Arhgap15-203;Arhgap15-202;Arhgap15-201,Arhgap15;Arhgap15;Arhgap15,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,72,78,76117,ENSMUSG00000049744,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1551,cg02161890,-0.0000179,0.000013,-1.372935957,0.170764565,loss,ns,0.0000373,0.0000222,1.682521343,0.093474672,pos,ns,0.002147355,0.006494997,0.330616801,0.741157295,pos,ns,0.130089612,-0.000325797,0.000223362,-1.458601808,0.14568716,neg,ns,0.572223945,Gm18714,Gm18714_Intergenic_downstream,15,13655300,13655349,13655300,13655301,50,+,CGTGGAATTTGGACTTAGACAACCATCTGAGACCTGCACCTGCCTCTTTC,Distal Intergenic,15,13713972,13714241,270,2,Gm18714-201,58892,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,2,100417610,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27791,cg26226395,-0.00000378,0.00000198,-1.909673036,0.057098147,loss,ns,0.00000566,0.00000337,1.682257201,0.093525913,pos,ns,0.002269739,0.000985877,2.302253671,0.021983238,pos,ns,1.657908347,-0.0000866,0.0000339,-2.553910658,0.011130226,neg,ns,0.957887524,Spata17,Spata17_Intron,1,187141817,187141866,187141817,187141818,50,-,CGCTAAGTAACCTGGTAAAGCCAAACAAATTTGTTTCCATTGAAAGGATC,"Intron (Spata17-205/Spata17, intron 5 of 10)",1,187044648,187215465,170818,2,Spata17-205,73599,Spata17-205;Spata17-201;Spata17-207;Spata17-206;Spata17-208;Spata17-202;Spata17-204,Spata17;Spata17;Spata17;Spata17;Spata17;Spata17;Spata17,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,6,74717,ENSMUSG00000026611,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
932,cg07665308,0.0000309,0.00000253,12.22071149,2.67E-28,gain,yes,-0.00000722,0.00000429,-1.682248873,0.093527529,neg,ns,0.001354145,0.001257169,1.077138012,0.28225611,pos,ns,0.549356649,0.0000593,0.0000432,1.372752086,0.170821683,pos,ns,0.016312359,Gata3,Gata3_fiveUTR,2,9878562,9878611,9878610,9878611,50,-,TCAAGACGGCGCCAGGCAGCTCAGTGTTCGCAGACAGCTGTGGCGCGACG,Promoter (<=1kb),2,9857078,9878600,21523,2,Gata3-201,0,4930412O13Rik-201;4930412O13Rik-202;9230102O04Rik-202;9230102O04Rik-201;Gata3-201;Gata3-205;Gata3-206;Gata3-202;Gata3-204;Gata3-203,4930412O13Rik;4930412O13Rik;9230102O04Rik;9230102O04Rik;Gata3;Gata3;Gata3;Gata3;Gata3;Gata3,-2641;-4025;10929;5382;0;0;-3163;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,21,14462,ENSMUSG00000015619,conserved gene but different region,2,9878568,9878714,147,*,147,12,0.639455782,0.804377565,0.081632653,1.97E-08,CpGisland,TRUE,U3,Pr-B
19131,cg04832063,-0.0000339,0.0000119,-2.839771906,0.004813007,loss,ns,-0.0000341,0.0000203,-1.682190688,0.09353882,neg,ns,-0.011564132,0.005933849,-1.94884168,0.052216173,neg,ns,1.282194961,0.0000141,0.000204065,0.069013727,0.945023188,pos,ns,0.744767932,Gm49017,Gm49017_Intergenic_upstream,14,98575231,98575280,98575231,98575232,50,-,CGAAGCAACAATCATGGTAGATTGCCTTATTCTGTTCCATTAAGAACTGA,Distal Intergenic,14,98519416,98519700,285,2,Gm49017-201,-55580,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,11,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25825,cg19103271,0.00000084,0.00000955,0.087949592,0.929973527,gain,ns,0.0000273,0.0000162,1.682109265,0.093554622,pos,ns,0.009480388,0.004751659,1.995174166,0.046898932,pos,ns,1.328837044,-0.000364484,0.000163409,-2.230496627,0.02642991,neg,ns,0.141594304,Uncx,Uncx_Intergenic_downstream,5,139580664,139580713,139580664,139580665,50,-,CGATTAAATGTCTCTCAGCCTAACACCTATGGGACCTGGGGAGAGGGAAG,Distal Intergenic,5,139543898,139545268,1371,1,Uncx-202,36815,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,59,88,22255,ENSMUSG00000029546,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
16087,cg01337054,-0.00000201,0.00000144,-1.397038645,0.16340115,loss,ns,0.0000041,0.00000244,1.681709481,0.093632239,pos,ns,0.001669601,0.000714888,2.335472238,0.020156379,pos,ns,1.695587481,-0.0000638,0.0000246,-2.59520711,0.009903013,neg,ns,0.959796304,Zfp407,Zfp407_Intron,18,84372362,84372411,84372410,84372411,50,-,ATTAACGAGTGCCTTCTTTGAATTAGAAAAACTGTATCATTTAGCCCACG,"Intron (Zfp407-201/Zfp407, intron 2 of 2)",18,84128027,84558425,430399,2,Zfp407-201,186014,Zfp407-201;Zfp407-202;Zfp407-203,Zfp407;Zfp407;Zfp407,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,32,240476,ENSMUSG00000048410,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10113,cg24216971,0.000119296,0.0000134,8.880048421,5.51E-17,gain,yes,-0.0000384,0.0000228,-1.681596281,0.093654226,neg,ns,0.014072936,0.006686331,2.104732319,0.036119274,pos,ns,1.442260989,-0.000616131,0.000229942,-2.679501863,0.007766972,neg,ns,0.226529604,Gm28308,Gm28308_Intron,6,52190961,52191010,52191009,52191010,50,+,AATTAAATTTATGGGGGCTATAATTACTGCCCTAACAGTTTGGCGTCTCG,"Intron (Hoxaas3-203/Hoxaas3-203, intron 1 of 1)",6,52163359,52213339,49981,2,Gm28308-201,22329,Gm28308-201;Hoxa3-201;Hoxa4-201,Gm28308;Hoxa3;Hoxa4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,46,103,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7196,cg17890936,-0.0000387,0.0000109,-3.544555298,0.000453889,loss,ns,0.0000312,0.0000186,1.681192275,0.09373273,pos,ns,-0.004923626,0.005435298,-0.905861301,0.365712791,neg,ns,0.43685985,0.0000698,0.000186919,0.373245104,0.709221128,pos,ns,0.819109636,Slit1,Slit1_threeUTR,19,41600614,41600663,41600662,41600663,50,+,CGCGTGGTCTGGCAGATGGCATAGCCCCTCTGGACCTGGTGAAAGTCCCG,3' UTR,19,41600257,41743492,143236,2,Slit1-203,142829,Slit1-203;Slit1-201;Slit1-202;Slit1-204,Slit1;Slit1;Slit1;Slit1,0;0;0;7867,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,4,20562,ENSMUSG00000025020,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1173,cg20916174,0.00000316,0.00000773,0.408608512,0.683109098,gain,ns,0.0000221,0.0000131,1.681142291,0.093742447,pos,ns,0.0000873,0.003845949,0.022697404,0.981906249,pos,ns,0.007929976,0.000113348,0.000132262,0.856999188,0.392107343,pos,ns,0.904794261,Gm14512,Gm14512_Intergenic_downstream,X,11989629,11989678,11989629,11989630,50,+,CGTTTGTATTCAAGTGATCACATAAATTAATATCCATATGTGGAAATGGT,Distal Intergenic,20,11984468,11984697,230,1,Gm14512-201,5161,Gm14512-201,Gm14512,5161,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,22,22,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25979,cg20655169,0.0000763,0.0000113,6.740362569,7.71E-11,gain,yes,0.0000323,0.0000192,1.68086523,0.093796319,pos,ns,0.00931139,0.005636184,1.652073393,0.09953207,pos,ns,1.002036964,-0.0000739,0.000193828,-0.381155465,0.703348981,neg,ns,0.628561996,Tmem164,Tmem164_Exon,X,142682844,142682893,142682892,142682893,50,+,CTTAGTAGCCCTGTGCCTGACCTTCGGGGTGGAGGTGGGCTTTAAGTTCG,Promoter (<=1kb),20,142682888,142771290,88403,1,Tmem164-207,0,Tmem164-204;Tmem164-202;Tmem164-205;Tmem164-201;Tmem164-206;Tmem164-208;Tmem164-207,Tmem164;Tmem164;Tmem164;Tmem164;Tmem164;Tmem164;Tmem164,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,15,209497,ENSMUSG00000047045,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20508,cg26170706,-0.0000332,0.0000128,-2.582672363,0.010262046,loss,ns,0.0000367,0.0000218,1.680831136,0.09380295,pos,ns,0.004722376,0.006394595,0.738494932,0.460772468,pos,ns,0.336513479,-0.000383324,0.00021991,-1.743096807,0.082308193,neg,ns,0.762548377,Mycbp2,Mycbp2_threeUTR,14,103173798,103173847,103173798,103173799,50,+,CGGAGGTACTGGTTTCCGCCTCTGTCTCTAGCTAAGGACCATGCCTCTCC,3' UTR,14,103113411,103346418,233008,2,Mycbp2-202,172571,Mycbp2-202;Mycbp2-201;Mycbp2-209;Mycbp2-204,Mycbp2;Mycbp2;Mycbp2;Mycbp2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,6,105689,ENSMUSG00000033004,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13909,cg19976416,-0.00000279,0.00000148,-1.887702204,0.059999803,loss,ns,0.00000423,0.00000251,1.680816989,0.093805702,pos,ns,0.000877298,0.000736475,1.191212433,0.234481444,pos,ns,0.62989152,-0.0000174,0.0000253,-0.688732547,0.491506704,neg,ns,0.961614726,Cir1,Cir1_Exon,2,73287696,73287745,73287696,73287697,50,+,CGAGGGGTGCATCGATGGCCCTGTTCACAAAAATCACAGTTTGAATGTAT,"Exon (Cir1-201/Cir1, exon 8 of 10)",2,73283105,73312701,29597,2,Cir1-201,24956,Cir1-201;Cir1-202;Sp9-202,Cir1;Cir1;Sp9,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,4,66935,ENSMUSG00000041777,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23857,cg24451908,0.0000813,0.0000059,13.77891816,5.05E-34,gain,yes,-0.0000168,0.00001,-1.680797665,0.09380946,neg,ns,0.010254227,0.00293487,3.49392843,0.000545281,pos,ns,3.263379365,-0.000135326,0.00010093,-1.34078658,0.180971399,neg,ns,0.10282088,En1,En1_Intron,1,120605074,120605123,120605074,120605075,50,-,CGAAAAGCTGCTTTGATTGACTCGCCTGATGGATAGAGTGATTGAGCTGT,"Intron (En1-201/En1, intron 1 of 1)",1,120602418,120607992,5575,1,En1-201,2656,En1-201,En1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,36,13798,ENSMUSG00000058665,conserved gene and region,1,120604932,120605097,166,*,166,13,0.620481928,0.815570673,0.078313253,7.04E-09,CpGisland,TRUE,U13,Hc-P
21337,cg07510989,0.00000561,0.00000505,1.109524417,0.26806397,gain,ns,-0.0000144,0.00000859,-1.680312579,0.093903852,neg,ns,0.002148042,0.002515855,0.853801753,0.393874105,pos,ns,0.40464257,-0.000142496,0.0000865,-1.646971102,0.10057726,neg,ns,0.901333954,Lin7a,Lin7a_fiveUTR,10,107380213,107380262,107380213,107380214,50,+,CGTGTGTGTTTCAGGTATTCTCGTGTGTACACTGTAAGAGAATTTAGACA,5' UTR,10,107271686,107421474,149789,1,Lin7a-201,108527,Lin7a-201;Lin7a-202;Lin7a-203,Lin7a;Lin7a;Lin7a,0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,4,108030,ENSMUSG00000019906,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12842,cg26379591,-0.00000236,0.00000339,-0.694393106,0.487955779,loss,ns,0.00000969,0.00000577,1.680176022,0.093930438,pos,ns,0.001872333,0.001689394,1.108286197,0.268597349,pos,ns,0.570898277,-0.000105298,0.0000581,-1.812416469,0.070889182,neg,ns,0.933934215,Rsrc1,Rsrc1_Intron,3,67289647,67289696,67289647,67289648,50,-,CGCTCCTTTGAGACATTAATGCTTTGGAATAAATGATGTGCTAGAACAGA,"Intron (Rsrc1-206/Rsrc1, intron 6 of 9)",3,66981390,67356559,375170,1,Rsrc1-206,308257,Rsrc1-206;Rsrc1-203;Rsrc1-202;Rsrc1-201;Rsrc1-209;Rsrc1-205,Rsrc1;Rsrc1;Rsrc1;Rsrc1;Rsrc1;Rsrc1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,37,66880,ENSMUSG00000034544,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8731,cg02188160,-0.00000336,0.0000016,-2.101539371,0.036400472,loss,ns,0.00000457,0.00000272,1.680164193,0.093932742,pos,ns,0.000772431,0.00079605,0.970330223,0.332638381,pos,ns,0.478027642,-0.0000486,0.0000274,-1.776240935,0.07667398,neg,ns,0.95832652,Gm13478,Gm13478_Intergenic_upstream,2,45637050,45637099,45637050,45637051,50,+,CGGTAAGAAGCTGACAGCTTTTTATGCATAAAAGGCAGCTGTTCCTTCTC,Distal Intergenic,2,45647191,45647603,413,1,Gm13478-201,-10092,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,10,100042661,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3150,cg03369923,-0.00000731,0.00000486,-1.503144436,0.133819815,loss,ns,0.0000139,0.00000826,1.680152064,0.093935103,pos,ns,-0.001056726,0.002421102,-0.436464961,0.662803242,neg,ns,0.178615376,-0.00000938,0.0000833,-0.112710287,0.910333196,neg,ns,0.80723705,Ptprz1,Ptprz1_Exon,6,23000278,23000327,23000326,23000327,50,-,TCAACACTACCCCTGCTGCTTCAAGTAGTGATTCGGCCTTGCATGCTACG,"Exon (Ptprz1-201/Ptprz1, exon 12 of 30)",6,22875502,23052916,177415,1,Ptprz1-201,124776,Ptprz1-201;Ptprz1-206;Ptprz1-204;Ptprz1-203,Ptprz1;Ptprz1;Ptprz1;Ptprz1,0;0;0;13969,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,4,19283,ENSMUSG00000068748,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1998,cg02419397,0.00000851,0.00000689,1.234859712,0.21781786,gain,ns,-0.0000197,0.0000117,-1.680097816,0.093945667,neg,ns,0.000813376,0.003429059,0.23720082,0.812657678,pos,ns,0.090092357,-0.000217231,0.000117925,-1.842106981,0.066414469,neg,ns,0.922491156,Gm5283,Gm5283_Intergenic_downstream,3,16939775,16939824,16939775,16939776,50,-,CGGTCCCTGGCGTACCCTCAGAATCGTATACATTCAGTTAAATGCAATAA,Distal Intergenic,3,17230642,17230975,334,2,Gm5283-201,291200,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,10,383936,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17613,cg08717144,-0.00000103,0.00000185,-0.556868273,0.578019232,loss,ns,0.00000527,0.00000314,1.680036329,0.093957641,pos,ns,0.001030588,0.000919073,1.121333537,0.263013773,pos,ns,0.580021508,-0.0000412,0.0000316,-1.304548383,0.193014329,neg,ns,0.951334095,Elavl2,Elavl2_Exon,4,91253298,91253347,91253298,91253299,50,-,CGGTATCCATTGAGGCTAGCTATCGCCATGGCAGCCTCATCATAGTTTGT,"Exon (Elavl2-204/Elavl2, exon 6 of 6)",4,91250763,91372034,121272,2,Elavl2-204,118687,Elavl2-204;Elavl2-201;Elavl2-207;Elavl2-208;Elavl2-202;Elavl2-209;Elavl2-210;Elavl2-206;Elavl2-203;Elavl2-205,Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,31,15569,ENSMUSG00000008489,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4342,cg12935781,-0.000025,0.00000873,-2.865037568,0.004454411,loss,ns,0.0000249,0.0000148,1.679939352,0.09397653,pos,ns,0.000238973,0.004345096,0.054998379,0.956175183,pos,ns,0.019462532,-0.0000839,0.000149427,-0.561392539,0.574935568,neg,ns,0.663337147,Gm6643,Gm6643_Promoter,18,28425532,28425581,28425532,28425533,50,-,CGCATCTGCAATTGTGAGCTGCATAATACAGCAATAGTATTTGAATATTA,Promoter (7-8kb),18,28432889,28435355,2467,1,Gm6643-201,-7357,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,3,625997,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25,cg22599383,-0.000000237,0.000000463,-0.513067206,0.608269734,loss,ns,-0.00000132,0.000000786,-1.6798229,0.093999215,neg,ns,0.000264046,0.000230389,1.146085846,0.252643541,pos,ns,0.5974918,-0.0000121,0.00000792,-1.528325027,0.127451545,neg,ns,0.008687138,Rab10,Rab10_fiveUTR,12,3309380,3309429,3309428,3309429,50,+,GAGCAGCTTGAAAAGCAGGTCGTACGTCTTCTTCGCCATTGGGAGGAGCG,Promoter (<=1kb),12,3247428,3309969,62542,2,Rab10-201,540,Rab10-201,Rab10,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,3,19325,ENSMUSG00000020671,conserved gene and region,12,3309325,3310215,891,*,891,114,0.708193042,1.022303187,0.127946128,5.29E-100,CpGisland,TRUE,U1,Pr-A
1524,cg22280647,-0.00000229,0.00000221,-1.036054074,0.300984411,loss,ns,-0.0000063,0.00000375,-1.679589075,0.094044779,neg,ns,0.00038285,0.00109966,0.348152814,0.727961721,pos,ns,0.137891457,-0.0000412,0.0000378,-1.090692368,0.2762553,neg,ns,0.953274772,Mrtfb,Mrtfb_threeUTR,16,13417458,13417507,13417458,13417459,50,-,CGGGAAATGTTTGATATCTCAGCAATTTTGCATTTTTGTGTCTCAAATAA,3' UTR,16,13358421,13417529,59109,1,Mrtfb-204,59037,Mrtfb-201;Mrtfb-204,Mrtfb;Mrtfb,160977;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,5,239719,ENSMUSG00000009569,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7863,cg16030195,0.00000079,0.00000295,0.267836769,0.789003088,gain,ns,0.00000842,0.00000501,1.67951613,0.094058997,pos,ns,0.003298473,0.00146847,2.246197291,0.025395264,pos,ns,1.595247261,-0.000130489,0.0000505,-2.583916773,0.010225889,neg,ns,0.939197398,Gtdc1,Gtdc1_Intron,2,44570562,44570611,44570610,44570611,50,-,ACTCGATATTAGTCACTTTACTAATTAAAAATGCATATTGCTCTGTGCCG,"Intron (Gtdc1-203/Gtdc1, intron 9 of 10)",2,44564412,44861622,297211,2,Gtdc1-203,291011,Gtdc1-203;Gtdc1-201;Gtdc1-207;Gtdc1-208;Gtdc1-205,Gtdc1;Gtdc1;Gtdc1;Gtdc1;Gtdc1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,43,227835,ENSMUSG00000036890,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20773,cg11328905,-0.00000334,0.00000326,-1.02310985,0.307053631,loss,ns,0.0000093,0.00000554,1.67950376,0.094061409,pos,ns,0.005012804,0.001623093,3.088426248,0.002194285,pos,ns,2.658706953,-0.000190966,0.0000558,-3.421214347,0.000707024,neg,ns,0.919634855,Rnf180,Rnf180_Exon,13,105131370,105131419,105131370,105131371,50,+,CGGAAAGAAAAAATAGCAAAGAAAGCAGAAAACAATGAATCCAATGACCC,"Exon (Rnf180-205/Rnf180, exon 8 of 8)",13,105130001,105294402,164402,2,Rnf180-205,162983,Rnf180-205;Rnf180-203,Rnf180;Rnf180,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,71816,ENSMUSG00000021720,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15350,cg21302471,0.00000171,0.0000037,0.462525949,0.644028675,gain,ns,0.0000106,0.00000629,1.679455969,0.094070725,pos,ns,0.005515218,0.001841692,2.994646933,0.002968986,pos,ns,2.527391785,-0.000217603,0.0000633,-3.435706356,0.000671587,neg,ns,0.917051427,Sos1,Sos1_Exon,17,80449331,80449380,80449379,80449380,50,-,TCTATATGGCCCAGTAACTTTACACTAAGTTCATGTATATCTACTATGCG,"Exon (Sos1-201/Sos1, exon 6 of 22)",17,80393751,80479969,86219,2,Sos1-201,30589,Sos1-201;Sos1-202,Sos1;Sos1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,20662,ENSMUSG00000024241,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4890,cg06758077,-0.0000129,0.00000425,-3.036800902,0.00259406,loss,ns,-0.0000121,0.00000721,-1.67936087,0.094089266,neg,ns,-0.002953392,0.00211359,-1.397334455,0.163312298,neg,ns,0.78698111,-0.0000813,0.0000727,-1.11799768,0.264433625,neg,ns,0.892505566,Snx17,Snx17_threeUTR,5,31197675,31197724,31197675,31197676,50,-,CGCCTGGAACTGGCTTTTGAATACCTCATGAGCAAGGACCGGCTACAGTG,3' UTR,5,31193227,31198900,5674,1,Snx17-201,4448,Eif2b4-201;Eif2b4-203;Eif2b4-212;Eif2b4-202;Eif2b4-208;Eif2b4-210;Eif2b4-209;Ppm1g-205;Ppm1g-201;Snx17-201;Snx17-205;Snx17-202;Snx17-204;Snx17-210;Snx17-208;Snx17-207;Snx17-211;Snx17-209;Snx17-206;Snx17-203;Zfp513-202;Zfp513-201;Zfp513-205;Zfp513-207;Zfp513-203;Zfp513-204;Zfp513-208;Zfp513-206,Eif2b4;Eif2b4;Eif2b4;Eif2b4;Eif2b4;Eif2b4;Eif2b4;Ppm1g;Ppm1g;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Zfp513;Zfp513;Zfp513;Zfp513;Zfp513;Zfp513;Zfp513;Zfp513,-4245;-4536;-4667;-4661;-4536;-4676;-4257;0;0;0;0;0;0;0;0;0;2832;0;0;0;0;0;0;2562;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,4,266781,ENSMUSG00000029146,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24905,cg15991909,-0.00000488,0.00000114,-4.281688545,0.0000248,loss,ns,0.00000325,0.00000194,1.679356546,0.094090109,pos,ns,0.001164851,0.000567627,2.052140714,0.04099553,pos,ns,1.387263497,-0.000033,0.0000195,-1.690185404,0.091997733,neg,ns,0.040957588,Zbtb8a,Zbtb8a_fiveUTR,4,129377936,129377985,129377984,129377985,50,-,CACAATTAAAGGGGCAACGCACAGATTTCAGGCACCAACCAGCAGCTTCG,Promoter (<=1kb),4,129353628,129378116,24489,2,Zbtb8a-201,131,Gm12980-201;Zbtb8a-201,Gm12980;Zbtb8a,-1859;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,5,73680,ENSMUSG00000028807,conserved gene but different region,4,129377047,129378041,995,*,995,129,0.712562814,1.024152624,0.129648241,6.09E-114,CpGisland,TRUE,NA,NRS
6201,cg18793839,-0.000013,0.00000633,-2.052894679,0.040921847,loss,ns,0.0000181,0.0000108,1.679240412,0.094112754,pos,ns,0.015059607,0.003152923,4.776394936,0.00000276,pos,ns,5.559470674,-0.000393695,0.000108429,-3.630906963,0.000330321,neg,ns,0.861954599,Igip,Igip_Exon,18,36301267,36301316,36301315,36301316,50,-,GCTGGGAAATCACCATGTGGAAACCAAGCAAACGTGTTGTGCATCAGCCG,"Exon (Igip-201/Igip, exon 1 of 1)",18,36298679,36301517,2839,1,Igip-201,2588,Igip-201,Igip,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,109169,ENSMUSG00000110185,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6327,cg23959331,-0.00000388,0.00000323,-1.202290299,0.230168628,loss,ns,0.00000921,0.00000549,1.679236091,0.094113597,pos,ns,0.006201341,0.001607291,3.858256951,0.000138942,pos,ns,3.857166448,-0.000145403,0.0000553,-2.630548723,0.008950504,neg,ns,0.930169808,Golgb1,Golgb1_Exon,16,36893292,36893341,36893340,36893341,50,-,AGTTTCTCTGGTATGTGTCTTCAGTTGAGTTCCATGCAGCAGGTGGTCCG,"Exon (Golgb1-202/Golgb1, exon 6 of 21)",16,36875168,36933085,57918,1,Golgb1-203,18124,Golgb1-203;Golgb1-204;Golgb1-202,Golgb1;Golgb1;Golgb1,0;18090;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,224139,ENSMUSG00000034243,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6927,cg26820958,-0.0000154,0.00000348,-4.432562412,0.0000129,loss,ns,0.00000994,0.00000592,1.678818906,0.094194984,pos,ns,0.000636612,0.001734348,0.367061218,0.713823792,pos,ns,0.146408981,0.0000697,0.0000596,1.168078831,0.243672519,pos,ns,0.946025234,Braf,Braf_Exon,6,39628597,39628646,39628645,39628646,50,+,CAGGAAGGATACTATTACTCTTGAGGTCTCTGTGGATGATTGACTTGGCG,"Exon (Braf-201/Braf, exon 17 of 22)",6,39603237,39725463,122227,2,Braf-201,96817,Braf-201;Braf-202,Braf;Braf,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,109880,ENSMUSG00000002413,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1820,cg17521862,-0.00000872,0.00000205,-4.249947252,0.0000283,loss,ns,0.00000585,0.00000349,1.678810332,0.094196657,pos,ns,0.001796992,0.001021323,1.759474632,0.079483312,pos,ns,1.099724047,-0.0000588,0.0000351,-1.673676501,0.095202853,neg,ns,0.939619646,Foxp2,Foxp2_Intron,6,15409143,15409192,15409143,15409144,50,+,CGGCTAATTTGCAATTAAGACAATTTTGTTTGAATATGTAGTAATGTCAT,"Intron (Foxp2-207/Foxp2, intron 12 of 18)",6,14901349,15441977,540629,1,Foxp2-207,507794,Foxp2-207;Foxp2-213;Foxp2-205;Foxp2-204;Foxp2-201;Foxp2-209;Foxp2-202;Foxp2-206,Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,38,65,114142,ENSMUSG00000029563,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12388,cg14640976,-0.00000328,0.00000114,-2.877093235,0.00429203,loss,ns,0.00000325,0.00000194,1.678778518,0.094202866,pos,ns,0.000776487,0.000568026,1.366992788,0.172618028,pos,ns,0.762913848,-0.0000348,0.0000195,-1.778930634,0.076230963,neg,ns,0.976646013,Fign,Fign_Intron,2,64088768,64088817,64088816,64088817,50,+,AATGTAATTTTTCATTTTCCAGGAAAGGATACATTTTCTAACTAACCCCG,"Intron (Fign-203/Fign, intron 2 of 2)",2,63971507,64098012,126506,2,Fign-203,9195,Fign-203;Fign-201;Fign-202;Fign-204,Fign;Fign;Fign;Fign,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,84,60344,ENSMUSG00000075324,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
624,cg18715259,0.00000186,0.00000584,0.319515842,0.749550594,gain,ns,0.0000166,0.00000991,1.678502704,0.094256707,pos,ns,0.004697054,0.002904467,1.617182867,0.106855883,pos,ns,0.971201561,-0.000122614,0.0000999,-1.227558582,0.220544044,neg,ns,0.9188455,Rbfox1,Rbfox1_Exon,16,7292174,7292223,7292222,7292223,50,+,CCTGCATGCAGGGATTTGGTTTCGTAACTTTCGAAAATAGTGCCGATGCG,"Exon (Rbfox1-205/Rbfox1, exon 8 of 12)",16,5885355,7353045,1467691,1,Rbfox1-205,1406819,Rbfox1-205;Rbfox1-201;Rbfox1-202;Rbfox1-203;Rbfox1-208;Rbfox1-207,Rbfox1;Rbfox1;Rbfox1;Rbfox1;Rbfox1;Rbfox1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,35,268859,ENSMUSG00000008658,conserved gene and region,16,7292196,7292275,80,*,80,9,0.5375,1.773399015,0.1125,0.00000013,CpGisland,TRUE,U15,NS
8396,cg02313256,-0.00000309,0.00000147,-2.103210762,0.036253042,loss,ns,0.00000419,0.0000025,1.678313667,0.094293624,pos,ns,0.001900689,0.000731099,2.599769614,0.009775147,pos,ns,2.009876685,-0.0000499,0.0000251,-1.984338795,0.048099574,neg,ns,0.968472265,Zeb2,Zeb2_Intron,2,45092839,45092888,45092887,45092888,50,-,TACTTTTAAATTCTGTACCACCTGTTTTGGGCAAGACATCTTAGGCAGCG,"Intron (Zeb2-212/Zeb2, intron 3 of 10)",2,44983632,45117395,133764,2,Zeb2-212,24507,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219;Zeb2-211,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16625,cg13269407.1,-0.000500369,0.0000281,-17.83743506,1.82E-49,loss,yes,0.00008,0.0000477,1.678268068,0.094302531,pos,ns,0.039087422,0.013961592,2.799639363,0.005436841,pos,ns,2.264653355,-0.001090514,0.000480138,-2.271251388,0.023817154,neg,ns,0.392112963,Wnt7b,Wnt7b_Intron,15,85653952,85654001,85653952,85653953,50,-,CGGGGCCCGGGGCTGTCAAGGAGAAAAACATCCCAAGGCCTGCAAATTGC,"Intron (Gm49539-201/Gm49539-201, intron 1 of 1)",15,85535441,85582473,47033,2,Wnt7b-205,-71528,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,7,22422,ENSMUSG00000022382,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4658,cg10270480,-0.00000227,0.00000204,-1.115801281,0.265371379,loss,ns,0.00000581,0.00000346,1.678089653,0.094337386,pos,ns,0.004099394,0.001013513,4.04473728,0.0000662,pos,ns,4.179317767,-0.000113442,0.0000349,-3.254712746,0.001260533,neg,ns,0.078796158,Hes1,Hes1_Exon,16,30066300,30066349,30066300,30066301,50,+,CGGTGATTTCTTCCAGACTTCCGCCCGTGGTTGTGAGAGGCATTCAGCTA,Promoter (<=1kb),16,30066338,30067319,982,1,Hes1-204,0,Hes1-202;Hes1-201;Hes1-203;Hes1-204,Hes1;Hes1;Hes1;Hes1,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,20,15205,ENSMUSG00000022528,conserved gene and region,16,30066223,30066328,106,*,106,15,0.698113208,1.169117647,0.141509434,3.45E-14,CpGisland,TRUE,U1,Pr-A
19934,cg20211859,0.00000383,0.00000432,0.885261179,0.376701922,gain,ns,0.0000123,0.00000734,1.677827514,0.094388617,pos,ns,0.005062507,0.002150768,2.353813871,0.019205853,pos,ns,1.716566392,-0.0000463,0.000074,-0.626038501,0.531750352,neg,ns,0.903422509,Uchl3,Uchl3_Exon,14,101667611,101667660,101667659,101667660,50,+,TCATACTGTAATACTGTTTTATAACTTGCTTTTTTCACTTATCAGAAACG,"Exon (Uchl3-204/Uchl3, exon 4 of 4)",14,101653967,101667822,13856,1,Uchl3-204,13644,Uchl3-204;Uchl3-201;Uchl3-205;Uchl3-202,Uchl3;Uchl3;Uchl3;Uchl3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,50933,ENSMUSG00000022111,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6560,cg22752232,-0.0000172,0.00000685,-2.51303971,0.012476667,loss,ns,0.0000195,0.0000116,1.677722263,0.094409193,pos,ns,0.00458956,0.003410822,1.345587735,0.179418852,pos,ns,0.746131928,-0.000211786,0.000117298,-1.805543412,0.071959694,neg,ns,0.869475354,Zfp536,Zfp536_Intron,7,37731246,37731295,37731246,37731247,50,+,CGCGAATATATTGCCACAAGCTTTGGGAATAATGGGTGCACCTGTTTACG,"Intron (Zfp536-202/Zfp536, intron 2 of 6)",7,37479104,37769624,290521,2,Zfp536-202,38329,Zfp536-202;Zfp536-201;Zfp536-203;Zfp536-206;Zfp536-209;Zfp536-208;Zfp536-205;Zfp536-207,Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,73,112,243937,ENSMUSG00000043456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24108,cg24100081,0.0000104,0.00000329,3.156139648,0.001755814,gain,ns,0.00000937,0.00000558,1.67768546,0.094416388,pos,ns,0.000684336,0.001635416,0.418447919,0.675909398,pos,ns,0.170111515,0.0000953,0.0000562,1.693946014,0.091279948,pos,ns,0.925913428,Prkcb,Prkcb_Intron,7,122584571,122584620,122584619,122584620,50,-,GAGGAATCCTCCAGAACTAACTTGGGCATGTGTTCTGCCAGGCAGCATCG,"Intron (Prkcb-205/Prkcb, intron 12 of 17)",7,122288751,122634399,345649,1,Prkcb-205,295820,Prkcb-205;Prkcb-202;Prkcb-201,Prkcb;Prkcb;Prkcb,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,7,18751,ENSMUSG00000052889,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15197,cg10546888,-0.0000617,0.00000807,-7.642680798,2.68E-13,loss,yes,0.000023,0.0000137,1.677313484,0.09448914,pos,ns,0.001288612,0.004016973,0.320791764,0.748584346,pos,ns,0.125759259,-0.000039,0.000138143,-0.282475412,0.777767504,neg,ns,0.672504567,Ddx17,Ddx17_Exon,15,79538610,79538659,79538658,79538659,50,-,TGGTTGGCACTCAACTCCAGATTGCCTACGTTGATCTGGGTGTAATCACG,"Exon (Ddx17-201/Ddx17, exon 8 of 13)",15,79527736,79546741,19006,2,Ddx17-201,8082,Ddx17-201;Ddx17-203;Ddx17-204;Ddx17-202,Ddx17;Ddx17;Ddx17;Ddx17,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,14,67040,ENSMUSG00000055065,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12592,cg26276608,-0.0000255,0.00000501,-5.084482004,0.000000639,loss,yes,-0.0000143,0.00000851,-1.677230986,0.094505282,neg,ns,-0.005140306,0.002493892,-2.061158471,0.040121615,neg,ns,1.396621591,0.0000116,0.0000858,0.135822023,0.892050135,pos,ns,0.885617576,Pds5a,Pds5a_Exon,5,65628057,65628106,65628105,65628106,50,-,GGTTCCTGAGCAAGCTTCATTATGGCACTACCAGCAGCTAATCGCAAGCG,"Exon (Pds5a-209/Pds5a, exon 24 of 33)",5,65605721,65698168,92448,2,Pds5a-209,70062,Pds5a-209;Pds5a-201;Pds5a-202;Pds5a-211;Pds5a-214;Pds5a-207,Pds5a;Pds5a;Pds5a;Pds5a;Pds5a;Pds5a,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,71521,ENSMUSG00000029202,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14833,cg12398079,0.000114902,0.0000161,7.1282064,7.18E-12,gain,yes,-0.0000459,0.0000274,-1.67722539,0.094506377,neg,ns,0.041933425,0.008022797,5.226783579,0.000000318,pos,ns,6.498193303,-0.001504172,0.000275903,-5.451808901,0.000000102,neg,yes,0.212867162,Fam172a,Fam172a_Intron,13,77897726,77897775,77897726,77897727,50,+,CGTCTCTCATCCCAACTTGATAATGAGGAATGCAGTGTGACCCTGACCTC,"Intron (Fam172a-203/Fam172a, intron 6 of 10)",13,77708690,78163655,454966,1,Fam172a-203,189036,Fam172a-203;Fam172a-201;Fam172a-202;Fam172a-209;Fam172a-205;Fam172a-207;Fam172a-208,Fam172a;Fam172a;Fam172a;Fam172a;Fam172a;Fam172a;Fam172a,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,24,68675,ENSMUSG00000064138,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12151,cg21607628,0.0000106,0.00000584,1.818920158,0.069888318,gain,ns,0.0000166,0.00000992,1.677184848,0.09451431,pos,ns,0.011236254,0.002906157,3.86636151,0.000134613,pos,ns,3.870912563,-0.000298563,0.0000999,-2.987349607,0.003038725,neg,ns,0.12385283,Skor1,Skor1_Intron,9,63139753,63139802,63139801,63139802,50,+,CAAAATTAAAGCAAACTTAGGCATTACTTCCCAGGTAATTTTACGCCTCG,"Intron (Skor1-203/Skor1, intron 7 of 8)",9,63138170,63147011,8842,2,Skor1-203,7209,Skor1-203;Skor1-202;Skor1-201,Skor1;Skor1;Skor1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,15,207667,ENSMUSG00000022245,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
12795,cg08007141,-0.00000095,0.00000147,-0.645320736,0.51919668,loss,ns,0.0000042,0.0000025,1.677137074,0.094523659,pos,ns,0.002642565,0.000732972,3.605272214,0.000363234,pos,ns,3.439813779,-0.0000782,0.0000252,-3.103160587,0.002091071,neg,ns,0.971295801,Tmem33,Tmem33_Intergenic_upstream,5,67205694,67205743,67205742,67205743,50,+,CCATTATCGAATCTGAACATTGAATTATCCACAATTATTTTCTGGGTACG,Distal Intergenic,5,67260565,67291461,30897,1,Tmem33-201,-54822,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,22,22,67878,ENSMUSG00000037720,mapped to different genes,5,67205742,67206001,260,*,260,15,0.457692308,1.114922813,0.057692308,2.43E-08,CpGisland,TRUE,U11,Tr-P
26493,cg05742354,-0.000000959,0.00000133,-0.719762017,0.472213822,loss,ns,-0.0000038,0.00000226,-1.67711943,0.094527112,neg,ns,-0.000128266,0.000663361,-0.193358568,0.846804788,neg,ns,0.072216695,-0.0000212,0.0000228,-0.930165928,0.353008942,neg,ns,0.034925277,Casz1,Casz1_fiveUTR,4,148804477,148804526,148804525,148804526,50,-,CGGACTTGGAAAGTCACCCAAAGCCGCCCCAAGTGCAGGTAAGAGACTCG,Promoter (<=1kb),4,148804429,148945129,140701,1,Casz1-201,48,Casz1-201;Casz1-202;Casz1-203,Casz1;Casz1;Casz1,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
18754,cg23938194,-0.00000159,0.00000148,-1.073799876,0.283747505,loss,ns,0.00000423,0.00000252,1.676914545,0.094567216,pos,ns,0.001559626,0.000738943,2.110616986,0.035605894,pos,ns,1.448478107,-0.0000551,0.0000254,-2.16992266,0.030771925,neg,ns,0.959817843,Kpnb1,Kpnb1_Exon,11,97171664,97171713,97171664,97171665,50,-,CGAACAACTACACTGGGGTCTTTCATTAATTCTATTAGGGTGGGCATAGC,"Exon (Kpnb1-201/Kpnb1, exon 11 of 22)",11,97159714,97187881,28168,2,Kpnb1-201,16168,Kpnb1-201,Kpnb1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,16211,ENSMUSG00000001440,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1706,cg23091169,-0.00000552,0.00000139,-3.970592826,0.0000892,loss,ns,0.00000396,0.00000236,1.676909271,0.094568248,pos,ns,0.00141398,0.000692215,2.042689491,0.041928793,pos,ns,1.377487635,-0.0000707,0.0000238,-2.967994156,0.003231033,neg,ns,0.965131443,Ss18,Ss18_threeUTR,18,14637422,14637471,14637470,14637471,50,-,CATAAGGCCTATCGTAGCCTTGTTCAGGATACGACGGTTGCTGATAACCG,3' UTR,18,14624198,14682766,58569,2,Ss18-202,45295,Ss18-202;Ss18-201;Ss18-210;Ss18-203;Ss18-206;Ss18-205;Ss18-212;Ss18-204;Ss18-209;Ss18-211,Ss18;Ss18;Ss18;Ss18;Ss18;Ss18;Ss18;Ss18;Ss18;Ss18,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,5,10,268996,ENSMUSG00000037013,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11519,cg03821809,-0.000000323,0.000000948,-0.340907885,0.733403856,loss,ns,0.0000027,0.00000161,1.676733117,0.09460274,pos,ns,0.000573217,0.000471817,1.214913899,0.225323476,pos,ns,0.647193558,-0.0000161,0.0000162,-0.995283356,0.320374706,neg,ns,0.967084732,Gm49356,Gm49356_Exon,15,58899844,58899893,58899844,58899845,50,-,CGGAAATGGCTGTACATTCAAGATACTTGTCCAATGTGCCATCAGAAAGT,"Exon (Rnf139-201/Rnf139, exon 2 of 2)",15,58889298,58937359,48062,1,Gm49356-201,10546,Gm49356-201;Rnf139-201;Rnf139-202;Tatdn1-201;Tatdn1-207;Tatdn1-209;Tatdn1-204;Tatdn1-210,Gm49356;Rnf139;Rnf139;Tatdn1;Tatdn1;Tatdn1;Tatdn1;Tatdn1,0;0;-244;0;33845;33834;33845;16285,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23770,cg16756969,0.000000932,0.0000123,0.07591971,0.939531947,gain,ns,0.000035,0.0000209,1.676632457,0.094622454,pos,ns,0.010645099,0.006111862,1.741711195,0.082550893,pos,ns,1.083278225,-0.0000649,0.000210186,-0.308654537,0.757791647,neg,ns,0.805545285,Rbm19,Rbm19_Intergenic_downstream,5,120294608,120294657,120294608,120294609,50,+,CGGATGAAATTAGCACTTCCTGCTATGTCGGGCAGATAAACTTTGCTGAA,Distal Intergenic,5,120175725,120197969,22245,1,Rbm19-210,118883,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,12,13,74111,ENSMUSG00000029594,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17930,cg27456337,-0.0000723,0.000011,-6.548547546,2.41E-10,loss,yes,-0.0000315,0.0000188,-1.676128418,0.09472122,neg,ns,-0.004871075,0.005497967,-0.885977485,0.376316407,neg,ns,0.424446846,-0.000278641,0.000189075,-1.473710976,0.141574123,neg,ns,0.795490704,Pcf11,Pcf11_Exon,7,92644693,92644742,92644693,92644694,50,-,CGTTTTTGACAATGTTCAACATAATATTCAAGGGGTTTTCAACTGGTGTC,"Exon (Pcf11-201/Pcf11, exon 16 of 16)",7,92643543,92669934,26392,2,Pcf11-201,25192,Pcf11-201;Pcf11-203;Pcf11-202,Pcf11;Pcf11;Pcf11,0;0;3467,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,8,74737,ENSMUSG00000041328,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1382,cg13073054,0.000066,0.0000114,5.767340887,1.95E-08,gain,yes,-0.0000326,0.0000194,-1.676067156,0.09473323,neg,ns,0.014597753,0.005696687,2.562498818,0.010864367,pos,ns,1.963995585,-0.000508592,0.000195909,-2.596069467,0.009878731,neg,ns,0.108266099,Fam49a,Fam49a_Intergenic_downstream,12,12509423,12509472,12509423,12509424,50,+,CGTCAACCACTTCAGGGGCATTCATTAGCTCCCCAGACATTCCTGGCGTG,Distal Intergenic,12,12262189,12343432,81244,1,Fam49a-204,247234,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,76820,ENSMUSG00000020589,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
21177,cg14134631,-0.000017,0.0000101,-1.685455445,0.092907,loss,ns,0.0000287,0.0000171,1.676005693,0.09474528,pos,ns,0.007492066,0.005018679,1.492836317,0.136497057,pos,ns,0.864876712,-0.000294678,0.000172592,-1.707365951,0.088755296,neg,ns,0.817116414,Zfp644,Zfp644_Intron,5,106632969,106633018,106632969,106632970,50,+,CGTAAGTGGTTGGACAGGCTAACAGCACTTGTAAACGTCGTATTGCAATG,"Intron (Gm28039-201/Gm28039-201, intron 1 of 2)",5,106616739,106696830,80092,2,Zfp644-204,63812,Zfp644-204;Zfp644-201;Zfp644-205;Zfp644-203;Zfp644-208;Zfp644-209;Zfp644-213,Zfp644;Zfp644;Zfp644;Zfp644;Zfp644;Zfp644;Zfp644,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,10,52397,ENSMUSG00000049606,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14699,cg16481539,-0.0000049,0.00000561,-0.87349018,0.383072083,loss,ns,0.000016,0.00000954,1.675934078,0.094759323,pos,ns,0.00574405,0.002794249,2.055668838,0.040651707,pos,ns,1.390921217,-0.000204967,0.0000961,-2.1329846,0.033711217,neg,ns,0.895701667,Fut8,Fut8_Exon,12,77365015,77365064,77365015,77365016,50,+,CGCGTTTTAGAAGAGCAGCTTGTTAAGGCCAAAGAACAGATTGAAAATTA,"Exon (Fut8-203/Fut8, exon 6 of 13)",12,77238125,77475985,237861,1,Fut8-203,126890,Fut8-203;Fut8-202;Fut8-204;Fut8-201,Fut8;Fut8;Fut8;Fut8,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,53618,ENSMUSG00000021065,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17435,cg10168186,-0.00000308,0.00000345,-0.892188447,0.37298394,loss,ns,-0.00000983,0.00000587,-1.675834319,0.094778887,neg,ns,0.001187449,0.001718529,0.690968246,0.490102565,pos,ns,0.309713025,-0.000114113,0.0000591,-1.930851417,0.054413106,neg,ns,0.883357074,Crtc2,Crtc2_threeUTR,3,90262936,90262985,90262984,90262985,50,-,CTTGACCCGTTCTCTTCCTGGCATGCACATGCTCTGGCCCAGCAGGTACG,3' UTR,3,90254163,90264125,9963,1,Crtc2-201,8773,Crtc2-201;Crtc2-203;Crtc2-206;Crtc2-202;Crtc2-205;Crtc2-208;Crtc2-204;Crtc2-207;Dennd4b-202;Dennd4b-201;Dennd4b-207,Crtc2;Crtc2;Crtc2;Crtc2;Crtc2;Crtc2;Crtc2;Crtc2;Dennd4b;Dennd4b;Dennd4b,0;0;0;8612;0;0;4885;3971;-2200;-3529;-4476,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,5,74343,ENSMUSG00000027936,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9300,cg20991883,-0.0000187,0.00000751,-2.484592581,0.013497517,loss,ns,0.0000214,0.0000128,1.675800495,0.09478552,pos,ns,0.001260703,0.003739415,0.337139172,0.736240132,pos,ns,0.132980513,-0.0000286,0.000128598,-0.222221051,0.824288137,neg,ns,0.07695054,Nr4a3,Nr4a3_Promoter,4,48045082,48045131,48045082,48045083,50,-,CGTCCCATGGCGTCACATTGACGTCTCGCATTCCAGGCACTCTATGGAGA,Promoter (<=1kb),4,48045153,48086445,41293,1,Nr4a3-201,-71,Nr4a3-201;Nr4a3-204;Nr4a3-203,Nr4a3;Nr4a3;Nr4a3,0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,6,20,18124,ENSMUSG00000028341,mapped to different genes,4,48045031,48045109,79,*,79,9,0.670886076,1.058035714,0.113924051,0.000000116,CpGisland,TRUE,U2,Pr-W
10151,cg21096298,0.000189104,0.0000181,10.46133509,3.90E-22,gain,yes,-0.0000515,0.0000307,-1.67571604,0.094802086,neg,ns,0.0269268,0.00899683,2.99292089,0.002985348,pos,ns,2.525005049,-0.001039643,0.0003094,-3.360187075,0.000876279,neg,ns,0.402312789,Gm28308,Gm28308_Exon,6,52204263,52204312,52204263,52204264,50,-,CGGAACTATGATCTCCATAATTATGCAACTGGTAGTCCGGGCCATTTGGA,"Exon (Hoxa5-201/Hoxa5, exon 1 of 2)",6,52163359,52213339,49981,2,Gm28308-201,9027,Gm28308-201;Hoxa3-201;Hoxa3-203;Hoxa5-201;Hoxa6-201,Gm28308;Hoxa3;Hoxa3;Hoxa5;Hoxa6,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,30,103,,NA,mapped to different genes,6,52203658,52204321,664,*,664,70,0.680722892,0.922222222,0.105421687,5.32E-55,CpGisland,TRUE,U3,Pr-B
8923,cg21310782,0.0000379,0.00000558,6.783015646,5.97E-11,gain,yes,-0.0000159,0.00000948,-1.675644222,0.094816176,neg,ns,0.010470698,0.002778774,3.76810049,0.000196869,pos,ns,3.705821695,-0.000441925,0.0000956,-4.624493038,0.00000552,neg,ns,0.116268224,Psd,Psd_Exon,19,46314458,46314507,46314458,46314459,50,+,CGCACCTTCTGCAGGTAGAGGATCATGCCCTTGAGGATCCCGTGGAAGCT,"Exon (Psd-211/Psd, exon 4 of 8)",19,46312087,46317591,5505,2,Psd-211,3084,Nfkb2-206;Nfkb2-201;Nfkb2-204;Nfkb2-202;Nfkb2-205;Nfkb2-207;Nfkb2-208;Psd-211;Psd-208;Psd-201;Psd-202;Psd-210;Psd-214,Nfkb2;Nfkb2;Nfkb2;Nfkb2;Nfkb2;Nfkb2;Nfkb2;Psd;Psd;Psd;Psd;Psd;Psd,10138;9714;9658;8762;8460;8460;8460;0;0;0;0;0;-154,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,6,73728,ENSMUSG00000037126,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13568,cg02931428,-0.0000132,0.00000324,-4.09131603,0.0000547,loss,ns,0.00000921,0.0000055,1.675483267,0.094847757,pos,ns,0.002806018,0.001610433,1.742400123,0.082430149,pos,ns,1.083913913,-0.0000652,0.0000554,-1.177933425,0.239726617,neg,ns,0.942575927,Gm10172,Gm10172_Intron,7,71374105,71374154,71374153,71374154,50,-,GATTTGTTATCAAATCAGGCATTGAGAAGCTGATTCATTGCTATTCAGCG,"Intron (Gm29328-206/Gm29328-206, intron 2 of 3)",7,71332363,71332921,559,2,Gm10172-201,-41233,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,31,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26125,cg07919628,-0.0000757,0.0000171,-4.438229079,0.0000126,loss,ns,-0.0000485,0.000029,-1.675272667,0.094889093,neg,ns,-0.002821179,0.008486431,-0.332434109,0.739786163,neg,ns,0.130893796,-0.000259662,0.000291848,-0.889717513,0.374307504,neg,ns,0.826574749,Sox5,Sox5_Intron,6,144095045,144095094,144095045,144095046,50,+,CGAAAATTACTAACAGCTGGAGATGACAGTTGTTTTAACAGCTGAGCTGA,"Intron (Sox5-201/Sox5, intron 3 of 14)",6,143828425,144209480,381056,2,Sox5-201,114386,Sox5-201;Sox5-214;Sox5-205;Sox5-202;Sox5-209;Sox5-207;Sox5-210,Sox5;Sox5;Sox5;Sox5;Sox5;Sox5;Sox5,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,71,20678,ENSMUSG00000041540,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13840,cg01890961,0.00000531,0.00000249,2.136661752,0.03340818,gain,ns,-0.00000707,0.00000422,-1.674844871,0.094973104,neg,ns,0.005116593,0.001236877,4.136701253,0.0000454,pos,ns,4.342678452,-0.000191072,0.0000425,-4.491994405,0.00000997,neg,ns,0.946973456,Fryl,Fryl_Exon,5,73074666,73074715,73074666,73074667,50,+,CGTAATCCACCAGTGGTGACCAGCAGCCTCCAGCTGGTGGGAAGGGCAGT,"Exon (Fryl-202/Fryl, exon 39 of 63)",5,73020322,73256619,236298,2,Fryl-202,181904,Fryl-219;Fryl-202;Fryl-210;Fryl-201;Fryl-217;Fryl-211;Fryl-214;Fryl-218,Fryl;Fryl;Fryl;Fryl;Fryl;Fryl;Fryl;Fryl,0;0;0;0;0;0;-3367;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,7,72313,ENSMUSG00000070733,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16124,cg13943045,-0.0000404,0.0000101,-3.977551294,0.0000867,loss,ns,0.0000289,0.0000172,1.674843841,0.094973306,pos,ns,0.014928017,0.005050001,2.956042591,0.003355279,pos,ns,2.474271374,-0.000583433,0.000173669,-3.35945381,0.000878525,neg,ns,0.787086234,Pcdh17,Pcdh17_Intron,14,84477248,84477297,84477296,84477297,50,-,TAGGAAATCTTGTTGCTCTGCAGGAGATTTGTCCAGTGTACAACTATACG,"Intron (Pcdh17-201/Pcdh17, intron 1 of 3)",14,84443563,84539002,95440,1,Pcdh17-201,33685,Pcdh17-201;Pcdh17-202,Pcdh17;Pcdh17,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,13,219228,ENSMUSG00000035566,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14948,cg16934808,0.0000855,0.00000913,9.370450797,1.55E-18,gain,yes,-0.000026,0.0000155,-1.674663877,0.095008665,neg,ns,0.008339487,0.004542034,1.836068774,0.067305055,pos,ns,1.171952315,-0.000216243,0.0001562,-1.384397185,0.167232575,neg,ns,0.103578481,Pax3,Pax3_fiveUTR,1,78196716,78196765,78196764,78196765,50,+,TCATCCTGGGCACAGCGCCGGCCAGCGTGGTCATCCTGGGGGCAGCTTCG,Promoter (<=1kb),1,78101267,78196838,95572,2,Pax3-201,73,Pax3-201;Pax3-202;Pax3-203,Pax3;Pax3;Pax3,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,17,18505,ENSMUSG00000004872,mapped to different genes,1,78196556,78196905,350,*,350,30,0.671428571,0.773993808,0.085714286,4.74E-21,CpGisland,TRUE,U3,Pr-B
19166,cg11101903,-0.00000244,0.00000236,-1.034681964,0.301623927,loss,ns,0.0000067,0.000004,1.674610687,0.095019118,pos,ns,0.003242251,0.001172394,2.765495799,0.006024371,pos,ns,2.220088314,-0.000118051,0.0000403,-2.927947276,0.003664754,neg,ns,0.941051169,Zc3h14,Zc3h14_Exon,12,98752831,98752880,98752879,98752880,50,+,GACCAAATGACAGAGGATCTGTCCCTGTTTCTAGGGAACAACACAATTCG,"Exon (Zc3h14-203/Zc3h14, exon 3 of 15)",12,98746964,98787753,40790,1,Zc3h14-203,5867,Zc3h14-203;Zc3h14-210;Zc3h14-202;Zc3h14-204;Zc3h14-207;Zc3h14-212;Zc3h14-208,Zc3h14;Zc3h14;Zc3h14;Zc3h14;Zc3h14;Zc3h14;Zc3h14,0;0;0;0;5831;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,75553,ENSMUSG00000021012,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18646,cg23920216,0.00000134,0.00000143,0.938218796,0.348862379,gain,ns,0.00000406,0.00000243,1.674201119,0.095099637,pos,ns,0.002794983,0.0007106,3.933271826,0.000103446,pos,ns,3.985285421,-0.0000724,0.0000244,-2.963943967,0.003272658,neg,ns,0.965772181,Tenm4,Tenm4_Intron,7,96512105,96512154,96512153,96512154,50,+,CATTGTCATTGGATCCTTAATTGTGCGTTTCATGAATTTTCATGTTTCCG,"Intron (Tenm4-201/Tenm4, intron 4 of 32)",7,96171246,96908569,737324,1,Tenm4-201,340859,Tenm4-201;Tenm4-209;Tenm4-203;Tenm4-202,Tenm4;Tenm4;Tenm4;Tenm4,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,26,23966,ENSMUSG00000048078,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4753,cg15181799,0.00000384,0.0000069,0.556011737,0.578603912,gain,ns,-0.0000196,0.0000117,-1.674090892,0.095121316,neg,ns,-0.00259869,0.00343478,-0.756581197,0.449875403,neg,ns,0.346907751,-0.0000264,0.000118122,-0.22344122,0.823339295,neg,ns,0.767639052,Mecom,Mecom_Intron,3,30452736,30452785,30452736,30452737,50,+,CGATCCAGTGCCCACATGTTCTTCAAGTGCCTACACAAGTAATGAGGTAC,"Intron (Mecom-212/Mecom, intron 1 of 15)",3,29951299,30509733,558435,2,Mecom-212,56948,Mecom-212;Mecom-213;Mecom-207;Mecom-208;Mecom-211;Mecom-209,Mecom;Mecom;Mecom;Mecom;Mecom;Mecom,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,80,14013,ENSMUSG00000027684,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7384,cg01224972,-0.0000499,0.00000974,-5.125920036,0.000000522,loss,yes,0.0000277,0.0000165,1.673620071,0.095213961,pos,ns,0.005957843,0.004848454,1.228812902,0.22007395,pos,ns,0.657431362,-0.000345973,0.000166738,-2.074950759,0.038815734,neg,ns,0.824304704,Afg1l,Afg1l_Promoter,10,42487106,42487155,42487106,42487107,50,-,CGTGTCTTTATAAACAGCTTATCTCCTTGAGAACAAAGAATAAACAAGGA,Promoter (8-9kb),10,42312585,42478565,165981,2,Afg1l-201,-8590,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,6,215951,ENSMUSG00000038302,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8609,cg00864262,-0.0000247,0.00000739,-3.337784999,0.000947369,loss,ns,0.000021,0.0000126,1.673437766,0.095249853,pos,ns,0.00414038,0.003677414,1.125894451,0.261081067,pos,ns,0.58322462,-0.000213864,0.000126466,-1.691079199,0.091826724,neg,ns,0.518767095,Dscaml1,Dscaml1_Exon,9,45445683,45445732,45445731,45445732,50,+,AGACGATGTGAATTGCTCTGACCAATGAGGCTTAATGGCCTTCCTCAACG,"Exon (Dscaml1-206/Dscaml1, exon 3 of 3)",9,45426628,45571224,144597,1,Dscaml1-208,19055,Dscaml1-208;Dscaml1-209;Dscaml1-202;Dscaml1-206;Dscaml1-211;Dscaml1-201;Dscaml1-210,Dscaml1;Dscaml1;Dscaml1;Dscaml1;Dscaml1;Dscaml1;Dscaml1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,32,114873,ENSMUSG00000032087,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21308,cg19451176,-0.00000457,0.0000037,-1.235629407,0.217531887,loss,ns,0.0000105,0.00000628,1.673426636,0.095252045,pos,ns,0.004440671,0.001840535,2.412707022,0.016414723,pos,ns,1.784766447,-0.000116526,0.0000633,-1.840980952,0.066579806,neg,ns,0.923991106,Rbm15,Rbm15_Intergenic_downstream,3,107325224,107325273,107325224,107325225,50,+,CGTTCGTACCTATGAAACCGTCACGGTGCATGCACATCCAAGGCATGTGG,Downstream (<1kb),3,107327135,107333101,5967,2,Rbm15-202,7828,Rbm15-201;Rbm15-202,Rbm15;Rbm15,0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,5,9,229700,ENSMUSG00000048109,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
219,cg13494247,0.00000442,0.00000467,0.946397094,0.344683185,gain,ns,-0.0000133,0.00000794,-1.673393492,0.095258572,neg,ns,0.002256385,0.002325915,0.970106364,0.332749761,pos,ns,0.477882247,-0.0000449,0.00008,-0.561788756,0.574665886,neg,ns,0.901698071,Gm21992,Gm21992_Exon,19,4788028,4788077,4788028,4788029,50,-,CGTGCATTCGTTTGCCTTGAAGAAACAGACGCAAGAAGGGTTGCTATCAC,"Exon (Rbm4-206/Rbm4, exon 3 of 4)",19,4742913,4811612,68700,2,Gm21992-203,23535,Gm21992-203;Gm21992-206;Gm21992-204;Gm21992-201;Gm21992-205;Gm21992-202;Rbm4-206;Rbm4-203;Rbm4-207;Rbm4-201;Rbm4-204;Rbm4-202;Rbm4-205,Gm21992;Gm21992;Gm21992;Gm21992;Gm21992;Gm21992;Rbm4;Rbm4;Rbm4;Rbm4;Rbm4;Rbm4;Rbm4,0;0;0;0;0;0;0;0;0;0;0;0;5806,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,27,48,102902673,ENSMUSG00000096370,mapped to different genes,19,4787858,4788058,201,*,201,17,0.577114428,1.040816327,0.084577114,4.91E-12,CpGisland,TRUE,U10,Tr-S
19057,cg14360779,0.0000239,0.0000146,1.641629101,0.101680953,gain,ns,-0.0000414,0.0000248,-1.673248664,0.095287096,neg,ns,0.008928833,0.00725149,1.231310146,0.219140184,pos,ns,0.659277977,-0.002366606,0.000249378,-9.490031015,6.41E-19,neg,yes,0.61268844,Hmgcs2,Hmgcs2_Exon,3,98291056,98291105,98291056,98291057,50,+,CGTATGGGCTTCTGCTCAGTCCAAGAGGACATCAACTCCCTGTGCCTGAC,"Exon (Hmgcs2-202/Hmgcs2, exon 2 of 11)",3,98280435,98310732,30298,1,Hmgcs2-202,10621,Hmgcs2-202;Hmgcs2-201,Hmgcs2;Hmgcs2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,15360,ENSMUSG00000027875,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25388,cg13372169,0.00000865,0.00000841,1.028213325,0.304651083,gain,ns,0.0000239,0.0000143,1.673112848,0.095313851,pos,ns,-0.000746196,0.004185708,-0.17827246,0.858625448,neg,ns,0.066196244,-0.000171072,0.000143946,-1.188446928,0.235567021,neg,ns,0.782170435,Gm9341,Gm9341_Intergenic_downstream,7,136181678,136181727,136181678,136181679,50,+,CGGCTGACATTGGAAGAGTGATTTAATTGATTTTAATCATACACCTGAGA,Distal Intergenic,7,135952798,135953783,986,1,Gm9341-201,228880,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,27,28,668764,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23609,cg08676748,0.0000622,0.00000692,8.989700806,2.50E-17,gain,yes,0.0000197,0.0000118,1.673047164,0.095326792,pos,ns,0.009331123,0.003443715,2.709609358,0.007110992,pos,ns,2.148069814,-0.000111211,0.000118429,-0.939054602,0.348433795,neg,ns,0.051025755,Dll4,Dll4_Promoter,2,119322231,119322280,119322279,119322280,50,+,GGCATCTGTCCCAGGCGGGCGGGAAGCTGCTGCATTAAATTGTAAAATCG,Promoter (3-4kb),2,119325784,119335962,10179,1,Dll4-201,-3504,Dll4-201,Dll4,0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,8,20,54485,ENSMUSG00000027314,conserved gene and region,2,119322082,119322448,367,*,367,37,0.632152589,1.026301867,0.100817439,1.47E-28,CpGisland,TRUE,U3,Pr-B
5148,cg19482025,-0.00000473,0.0000141,-0.335874418,0.737192779,loss,ns,-0.00004,0.0000239,-1.672991589,0.095337743,neg,ns,0.01538947,0.007012412,2.194604349,0.028933512,pos,ns,1.538598843,0.00000103,0.000241156,0.00425981,0.996603914,pos,ns,0.273431724,Fli1,Fli1_Promoter,9,32543074,32543123,32543122,32543123,50,-,CCTGTCTGCTTCTCAATCCAGGGGTCTGCTCCGGGGCTCCCCTGGGACCG,Promoter (<=1kb),9,32428059,32542861,114803,2,Fli1-202,-262,Fli1-201;Fli1-202,Fli1;Fli1,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,5,15,14247,ENSMUSG00000016087,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
25316,cg06082741,0.000151455,0.0000161,9.380498155,1.44E-18,gain,yes,-0.0000459,0.0000274,-1.672846471,0.095366343,neg,ns,0.016317639,0.008035915,2.030588688,0.043150013,pos,ns,1.365019066,-0.000481052,0.000276354,-1.740706756,0.082727192,neg,ns,0.104302074,Plcb1,Plcb1_Exon,2,134786583,134786632,134786583,134786584,50,-,CGTGTCCGACAGCCTCAAGAAGGGCACCAAATTCGTCAAGTGGGATGATG,Promoter (<=1kb),2,134786067,135475247,689181,1,Plcb1-205,516,Plcb1-205;Plcb1-202;Plcb1-204;Plcb1-208;Plcb1-201,Plcb1;Plcb1;Plcb1;Plcb1;Plcb1,0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,18795,ENSMUSG00000051177,conserved gene and region,2,134785945,134786751,807,*,807,87,0.721189591,0.845891566,0.107806691,3.93E-69,CpGisland,TRUE,U1,Pr-A
4096,cg23223779,-0.0000442,0.0000074,-5.97212932,6.41E-09,loss,yes,0.000021,0.0000126,1.672820224,0.095371517,pos,ns,-0.008154227,0.003683952,-2.213445319,0.027594826,neg,ns,1.559172336,0.000328096,0.000126691,2.589737607,0.01005827,pos,ns,0.728734258,Gm45647,Gm45647_Promoter,8,26770684,26770733,26770684,26770685,50,-,CGTCACCAAAGAGCAAAGCATTATTTATGACTGTCTGTAATGCCGTTCGG,Promoter (9-10kb),8,26780315,26780509,195,1,Gm45647-201,-9631,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,62,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26999,cg25067228,-0.0000356,0.00000893,-3.989001492,0.0000828,loss,ns,0.0000254,0.0000152,1.672567576,0.095421327,pos,ns,0.002716697,0.004446979,0.610908398,0.541707884,pos,ns,0.266234843,-0.000201413,0.000152931,-1.31701928,0.188804863,neg,ns,0.744488418,Cpne1,Cpne1_Exon,2,156097320,156097369,156097368,156097369,50,+,CCATTATTTCGACCTACATGATCTTTCAACAAATGCACTGCATCAACACG,"Exon (Gm28036-201/Gm28036, exon 1 of 16)",2,156071842,156111935,40094,2,Cpne1-217,14566,Cpne1-217;Cpne1-209;Cpne1-202;Cpne1-203;Cpne1-201;Cpne1-210;Cpne1-206;Cpne1-212;Cpne1-208;Cpne1-205;Cpne1-213;Cpne1-216;Gm28036-201;Gm28036-202;Gm28036-203;Gm28036-204;Gm28036-205;Gm28036-208;Gm28036-207;Gm28036-206;Rbm12-201;Rbm12-202;Rbm12-204;Rbm12-203;Rbm12-205,Cpne1;Cpne1;Cpne1;Cpne1;Cpne1;Cpne1;Cpne1;Cpne1;Cpne1;Cpne1;Cpne1;Cpne1;Gm28036;Gm28036;Gm28036;Gm28036;Gm28036;Gm28036;Gm28036;Gm28036;Rbm12;Rbm12;Rbm12;Rbm12;Rbm12,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;-392;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,9,266692,ENSMUSG00000074643,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15401,cg17212850,-0.0000303,0.00000745,-4.064393098,0.0000611,loss,ns,0.0000212,0.0000127,1.672206159,0.095492619,pos,ns,-0.011293634,0.003707284,-3.04633669,0.002515517,neg,ns,2.599372765,0.0000826,0.000127493,0.647854349,0.517558678,pos,ns,0.745421211,Gria2,Gria2_Exon,3,80702538,80702587,80702538,80702539,50,-,CGATGGGAGACACCATCCTCTCTACAGTCAGGAAGGCAGCTAAGTTAGCC,"Exon (Gria2-201/Gria2, exon 12 of 16)",3,80681450,80802835,121386,2,Gria2-201,100248,Gria2-201;Gria2-202;Gria2-203;Gria2-206;Gria2-204;Gria2-207,Gria2;Gria2;Gria2;Gria2;Gria2;Gria2,0;0;0;0;100063;100137,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,19,14800,ENSMUSG00000033981,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12278,cg18364721,-0.0000112,0.00000329,-3.406635532,0.000744429,loss,ns,0.00000934,0.00000558,1.672146348,0.095504421,pos,ns,0.000453499,0.001635803,0.277233048,0.781785942,pos,ns,0.106912143,-0.0000423,0.0000563,-0.751186321,0.453110391,neg,ns,0.941559627,Xkr6,Xkr6_Exon,14,63819049,63819098,63819049,63819050,50,-,CGCCATGGCCTTCTGGATCATCCATGGCGGAACAGACTTCTGCATGTCCA,"Exon (Xkr6-201/Xkr6, exon 3 of 3)",14,63606503,63820809,214307,1,Xkr6-201,212546,Xkr6-201;Xkr6-202,Xkr6;Xkr6,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,11,219149,ENSMUSG00000035067,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26844,cg01052352,0.0000175,0.00000766,2.292224417,0.022562523,gain,ns,0.0000217,0.000013,1.671893678,0.095554292,pos,ns,0.006181928,0.003810519,1.622332165,0.105748762,pos,ns,0.975724709,-0.000140004,0.000131043,-1.068377667,0.286181422,neg,ns,0.686818181,Ajap1,Ajap1_threeUTR,4,153382258,153382307,153382258,153382259,50,-,CGGCCAGTCAGCAGGAGATTTCAAACCATTTCTCAGACACGAAGGCCACA,3' UTR,4,153373221,153482811,109591,2,Ajap1-201,100504,Ajap1-201;Ajap1-202,Ajap1;Ajap1,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,3,230959,ENSMUSG00000039546,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13828,cg07094804,-0.000000361,0.00000508,-0.070974898,0.943463499,loss,ns,0.0000144,0.00000863,1.671736719,0.095585282,pos,ns,0.00410248,0.002528985,1.622184536,0.105780375,pos,ns,0.975594898,-0.000214946,0.000087,-2.471447501,0.013993804,neg,ns,0.53008994,Slitrk3,Slitrk3_Exon,3,73048518,73048567,73048566,73048567,50,-,CCAGGACTTCGAGGTAATCCGGCTTGGTTTGAAGTTTGGCCCTTAACTCG,"Exon (Slitrk3-202/Slitrk3, exon 2 of 2)",3,73047265,73056943,9679,2,Slitrk3-202,8376,Slitrk3-202;Slitrk3-201,Slitrk3;Slitrk3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,386750,ENSMUSG00000048304,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22401,cg22529808,-0.0000443,0.00000953,-4.651894781,0.00000488,loss,ns,0.0000271,0.0000162,1.671284569,0.095674601,pos,ns,0.005728907,0.004743637,1.207703445,0.22808193,pos,ns,0.641909121,-0.000327241,0.000163133,-2.005976229,0.045727301,neg,ns,0.766304843,Sdk2,Sdk2_Intergenic_upstream,11,114203181,114203230,114203181,114203182,50,-,CGATTTTTGTGGTATTACACCATCTAATAAATGAAACAGCAGGGATCAAT,Distal Intergenic,11,113865600,114067046,201447,2,Sdk2-205,-136184,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,11,237979,ENSMUSG00000041592,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8295,cg21191843,-0.00000616,0.00000312,-1.97180781,0.04952036,loss,ns,-0.00000887,0.00000531,-1.671254618,0.09568052,neg,ns,-0.001705765,0.001555028,-1.096935556,0.273520921,neg,ns,0.56300945,0.0000737,0.0000535,1.377779535,0.169265136,pos,ns,0.930713673,Ebf1,Ebf1_Intron,11,44977257,44977306,44977305,44977306,50,-,TGATTTTTCAGCCCTCCCAGCCCTGCCTGACCTTCTAATTTAGCTCACCG,"Intron (Ebf1-203/Ebf1, intron 11 of 15)",11,44617317,45004995,387679,1,Ebf1-203,359940,Ebf1-203;Ebf1-202;Ebf1-201;Ebf1-206,Ebf1;Ebf1;Ebf1;Ebf1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,80,13591,ENSMUSG00000057098,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19610,cg16566666,0.00000252,0.00000161,1.566361157,0.118284273,gain,ns,0.00000456,0.00000273,1.671230837,0.09568522,pos,ns,0.001832132,0.000799523,2.291532099,0.022602999,pos,ns,1.645833943,-0.0000632,0.0000275,-2.297354167,0.022264586,neg,ns,0.956018258,Bdp1,Bdp1_Exon,13,100084134,100084183,100084182,100084183,50,+,TACTTACGGAATGCTTTGTCTATTCTCCATCCATTTGTTTTCTCTTCCCG,"Exon (Bdp1-201/Bdp1, exon 8 of 39)",13,100017994,100104070,86077,2,Bdp1-201,19887,Bdp1-201;Bdp1-204;Bdp1-206,Bdp1;Bdp1;Bdp1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,544971,ENSMUSG00000049658,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17559,cg11942953,-0.00000312,0.00000163,-1.918053229,0.056022732,loss,ns,0.00000461,0.00000276,1.671139367,0.095703299,pos,ns,0.001527941,0.000808891,1.88893361,0.059833984,pos,ns,1.223052078,-0.0000653,0.0000278,-2.347999156,0.019502839,neg,ns,0.957651262,Chd9,Chd9_Exon,8,90989431,90989480,90989431,90989432,50,+,CGAAACTGCATCTTAGCAGATGAAATGGGTCTTGGCAAAACTATTCAATC,"Exon (Chd9-201/Chd9, exon 13 of 40)",8,90828352,91054516,226165,1,Chd9-201,161079,Chd9-201;Chd9-202;Chd9-203;Chd9-205;Chd9-210;Chd9-204;Chd9-214,Chd9;Chd9;Chd9;Chd9;Chd9;Chd9;Chd9,0;0;0;0;0;0;-2083,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,5,109151,ENSMUSG00000056608,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20707,cg07387047,-0.0000113,0.00000544,-2.083650446,0.038010832,loss,ns,-0.0000155,0.00000925,-1.670989361,0.095732954,neg,ns,-0.001937947,0.002709986,-0.715113294,0.475077251,neg,ns,0.323235765,-0.00000394,0.0000932,-0.042243823,0.966331523,neg,ns,0.932552156,Dab1,Dab1_Intron,4,104542341,104542390,104542341,104542342,50,+,CGTCAGAGCTGACTAGACACTGGATTAATGGGGATTTGGTAGATTTCTAT,"Intron (Dab1-202/Dab1, intron 4 of 9)",4,103619665,104680382,1060718,1,Dab1-202,922676,Dab1-202;Dab1-206;Dab1-207;Dab1-203;Dab1-201,Dab1;Dab1;Dab1;Dab1;Dab1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,13,13131,ENSMUSG00000028519,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13071,cg04879945,0.0000302,0.0000149,2.030545169,0.043154459,gain,ns,-0.0000422,0.0000253,-1.670900416,0.095750541,neg,ns,0.064441178,0.007403705,8.703909323,1.93E-16,pos,yes,15.71392923,-0.001037096,0.000254613,-4.073226908,0.0000589,neg,ns,0.627256002,Rora,Rora_threeUTR,9,69361739,69361788,69361787,69361788,50,-,GGCTTTTTCAGGAGAAGTCAGCAAAGCAATGCCACCTACTCCTGTCCTCG,3' UTR,9,68653786,69388246,734461,1,Rora-201,707953,Rora-201;Rora-206;Rora-202,Rora;Rora;Rora,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,19,19883,ENSMUSG00000032238,mapped to different genes,9,69361787,69361984,198,*,198,11,0.585858586,0.654447115,0.055555556,0.00000422,CpGisland,TRUE,U11,Tr-P
26128,cg10639687,0.0000137,0.00000604,2.266487983,0.024110438,gain,ns,-0.0000171,0.0000103,-1.670815981,0.095767238,neg,ns,-0.006319814,0.003005338,-2.102863056,0.03628367,neg,ns,1.440288788,0.000000478,0.000103353,0.004628754,0.996309779,pos,ns,0.852982618,Sox5,Sox5_Exon,6,144155148,144155197,144155196,144155197,50,+,TTTCTGTCTGCTTGTCACCATGGCTACCTCTCCATCTGCTTCCCCATACG,"Exon (Sox5-201/Sox5, exon 2 of 15)",6,143828425,144209480,381056,2,Sox5-201,54283,Sox5-201;Sox5-214;Sox5-205;Sox5-202;Sox5-209;Sox5-207;Sox5-210;Sox5-212;Sox5-208;Sox5-213,Sox5;Sox5;Sox5;Sox5;Sox5;Sox5;Sox5;Sox5;Sox5;Sox5,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,71,20678,ENSMUSG00000041540,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5995,cg10601935,-0.0000303,0.00000781,-3.877791973,0.000128724,loss,ns,0.0000222,0.0000133,1.670723093,0.09578561,pos,ns,0.007406081,0.003885885,1.905892689,0.057588891,pos,ns,1.239661287,-0.000157431,0.000133635,-1.178067116,0.239673398,neg,ns,0.615134803,Pank3,Pank3_Exon,11,35777648,35777697,35777696,35777697,50,+,AATGGACAAGCCGAGTGCTATTATTTTGCTAATGCCTCAGAACCTGAGCG,"Exon (Pank3-201/Pank3, exon 3 of 7)",11,35769484,35791285,21802,1,Pank3-201,8164,Pank3-201,Pank3,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,211347,ENSMUSG00000018846,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24836,cg01998044,-0.0000108,0.00000178,-6.082049377,3.49E-09,loss,yes,0.00000505,0.00000302,1.670684532,0.095793238,pos,ns,-0.000324596,0.000885356,-0.366627312,0.714147143,neg,ns,0.146212297,0.00000667,0.0000304,0.219161351,0.826668587,pos,ns,0.969242972,Zfp362,Zfp362_Exon,4,128786006,128786055,128786054,128786055,50,-,GACTTATCACAGTAGGAGCAGTGGTAGGGCTTGACGCCCAGGTGGATGCG,"Exon (Zfp362-202/Zfp362, exon 6 of 9)",4,128773088,128806045,32958,2,Zfp362-202,19990,Zfp362-202;Zfp362-201;Zfp362-204;Zfp362-203,Zfp362;Zfp362;Zfp362;Zfp362,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,7,230761,ENSMUSG00000028799,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24440,cg23456740,0.00000368,0.00000267,1.380045896,0.168566954,gain,ns,0.00000758,0.00000453,1.670573792,0.095815146,pos,ns,0.004199319,0.001328569,3.160783174,0.001728933,pos,ns,2.762221933,-0.0000861,0.0000457,-1.883728045,0.060537572,neg,ns,0.083656021,Ntf3,Ntf3_fiveUTR,6,126166527,126166576,126166575,126166576,50,+,AGATTGTACCTGCCTCATCATTATCCTGGCTGATGGGGGTTGCCACATCG,Promoter (<=1kb),6,126101412,126166715,65304,2,Ntf3-202,139,Ntf3-203;Ntf3-202;Ntf3-201,Ntf3;Ntf3;Ntf3,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,5,18205,ENSMUSG00000049107,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
10984,cg07181029,0.000018,0.00000916,1.962444421,0.050604949,gain,ns,0.000026,0.0000156,1.670537358,0.095822354,pos,ns,0.007838188,0.004560726,1.718627361,0.086680619,pos,ns,1.062077994,-0.00027698,0.000156843,-1.765968251,0.078385433,neg,ns,0.270268124,Gm50135,Gm50135_Promoter,19,56005894,56005943,56005942,56005943,50,+,AATAAGCAATTGCTAAAGATTCCAGACTTCTCAAAGTTCAGAGTTCAACG,Promoter (6-7kb),19,56012529,56012925,397,1,Gm50135-201,-6586,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,7,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26442,cg10215507,0.0000294,0.00000553,5.323016087,0.000000196,gain,yes,-0.0000157,0.0000094,-1.670476281,0.09583444,neg,ns,0.007501966,0.002752708,2.725303987,0.006789242,pos,ns,2.1681787,-0.000187321,0.0000947,-1.978771707,0.048726475,neg,ns,0.081341156,Foxa2,Foxa2_Intergenic_downstream,2,148040242,148040291,148040290,148040291,50,-,AACCAAGCGACTGTTGACTTTAGCACACAAAGCAAAGATTTCACTGCCCG,Distal Intergenic,2,148044240,148045464,1225,2,Foxa2-203,5222,Foxa2-202;Foxa2-201;Foxa2-204;Foxa2-203,Foxa2;Foxa2;Foxa2;Foxa2,0;0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,25,15376,ENSMUSG00000037025,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
22304,cg22515758,-0.00000445,0.00000352,-1.265774192,0.206544387,loss,ns,0.00000998,0.00000597,1.670139291,0.095901143,pos,ns,0.003051729,0.001750293,1.74355343,0.08222834,pos,ns,1.084978479,-0.0000726,0.0000602,-1.205559494,0.22890677,neg,ns,0.92564672,Setd5,Setd5_Exon,6,113110297,113110346,113110345,113110346,50,+,TTAAAAAATCTTATTTTCAGGATCATAATTACGGAGCCCCTCCTCCTCCG,"Exon (Setd5-203/Setd5, exon 4 of 22)",6,113077365,113153435,76071,1,Setd5-201,32932,Setd5-209;Setd5-201;Setd5-206;Setd5-205;Setd5-203;Setd5-212;Setd5-202;Setd5-204;Setd5-210;Setd5-214;Setd5-207,Setd5;Setd5;Setd5;Setd5;Setd5;Setd5;Setd5;Setd5;Setd5;Setd5;Setd5,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,19,72895,ENSMUSG00000034269,conserved gene but different region,6,113110328,113110442,115,*,115,9,0.652173913,0.798611111,0.07826087,0.00000296,CpGisland,TRUE,U10,Tr-S
18791,cg09988058,-0.00000588,0.000000984,-5.978740977,6.18E-09,loss,yes,0.00000279,0.00000167,1.670132886,0.095902411,pos,ns,-0.000272448,0.000489513,-0.556568858,0.578223584,neg,ns,0.237904199,0.0000144,0.0000168,0.852654679,0.394509106,pos,ns,0.970130347,Socs7,Socs7_Exon,11,97389585,97389634,97389585,97389586,50,+,CGAAAGTTCTACTACTATGATCCTCAGGAAGAGGTATACCTGTCTCTAAA,"Exon (Socs7-203/Socs7, exon 9 of 10)",11,97362435,97398542,36108,1,Socs7-203,27150,Socs7-203;Socs7-201,Socs7;Socs7,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,192157,ENSMUSG00000038485,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10594,cg01643358,0.0000607,0.00000735,8.254710252,4.43E-15,gain,yes,-0.0000209,0.0000125,-1.669482744,0.096031206,neg,ns,0.021101433,0.00366001,5.765402535,1.97E-08,pos,ns,7.705842188,-0.00050513,0.000125867,-4.013193646,0.0000752,neg,ns,0.773722742,Faf2,Faf2_Exon,13,54648263,54648312,54648311,54648312,50,-,TCATGTGATATTTATTCCTTCCTCCCCAGGTTTGCTCTTCGTTTTATACG,"Exon (Faf2-203/Faf2, exon 5 of 11)",13,54621784,54664063,42280,1,Faf2-203,26479,Faf2-203;Faf2-209;Faf2-201;Faf2-206;Faf2-205;Faf2-202;Faf2-208;Faf2-207,Faf2;Faf2;Faf2;Faf2;Faf2;Faf2;Faf2;Faf2,0;0;0;0;0;0;0;-3129,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,6,76577,ENSMUSG00000025873,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27648,cg18121712,-0.00000764,0.00000892,-0.857478007,0.391843186,loss,ns,-0.0000253,0.0000151,-1.669419684,0.096043706,neg,ns,-0.00494925,0.004437094,-1.115426162,0.265531767,neg,ns,0.575883515,0.0000254,0.000152591,0.166625982,0.867772978,pos,ns,0.793571433,Gm20721,Gm20721_threeUTR,2,174336738,174336787,174336786,174336787,50,+,CTTTAAAAGGGGCGGCGAAGAGGACCCGCAGGCTGCAAGGAGCAACAGCG,3' UTR,2,174330319,174346712,16394,2,Gm20721-201,9925,Gm20721-201;Gnas-222;Gnas-211;Gnas-215;Gnas-214;Gnas-201;Gnas-209;Gnas-220;Gnas-223;Gnas-224;Gnas-203;Gnas-212;Gnas-221;Gnas-217;Gnas-202;Gnas-218;Gnas-207;Gnas-226;Gnas-208;Gnas-206;Gnas-205;Gnas-216,Gm20721;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,9,10,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9690,cg11583647,-0.000000759,0.00000307,-0.247544369,0.804650832,loss,ns,0.0000087,0.00000521,1.669377966,0.096051976,pos,ns,0.003467656,0.001526863,2.271098934,0.023826492,pos,ns,1.622939895,-0.000142441,0.0000525,-2.712717683,0.007046198,neg,ns,0.926527674,Nell1,Nell1_Intron,7,50046867,50046916,50046867,50046868,50,+,CGAAACAATAATTAAAATGAGACATCATCTCTGTAGGAGGTTTGCATATT,"Intron (Nell1-204/Nell1, intron 2 of 9)",7,49974864,50560889,586026,1,Nell1-204,72003,Nell1-204;Nell1-201;Nell1-203;Nell1-202,Nell1;Nell1;Nell1;Nell1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,6,338352,ENSMUSG00000055409,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22611,cg18237657,-0.00000967,0.00000165,-5.850575383,1.24E-08,loss,yes,-0.00000469,0.00000281,-1.669279788,0.09607144,neg,ns,-0.000696554,0.000823028,-0.846330602,0.39802117,neg,ns,0.400093829,-0.0000222,0.0000283,-0.784901561,0.433110698,neg,ns,0.957722115,Kctd2,Kctd2_Exon,11,115429345,115429394,115429393,115429394,50,+,CTCCAGAGAACTAAATAATTCTACCAATGGCATCGTCATAGAGCCGAGCG,Promoter (<=1kb),11,115429353,115430201,849,1,Kctd2-204,0,Kctd2-201;Kctd2-202;Kctd2-203;Kctd2-204,Kctd2;Kctd2;Kctd2;Kctd2,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,70382,ENSMUSG00000016940,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16242,cg05973305,0.0000663,0.0000118,5.636588706,0.000000039,gain,yes,-0.0000334,0.00002,-1.669179101,0.096091406,neg,ns,0.006946552,0.005855338,1.186362272,0.236387695,pos,ns,0.626375134,-0.000282317,0.000201365,-1.40202016,0.161909732,neg,ns,0.375692463,Gm26913,Gm26913_Intergenic_downstream,13,84639400,84639449,84639400,84639401,50,-,CGCCATATGGTGCCACTATGAACTTATTAGCTGACGGATTAACTGATCTC,Distal Intergenic,13,84690210,84690941,732,2,Gm26913-201,51541,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,9,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20897,cg06839075,0.000129326,0.0000105,12.34529484,9.47E-29,gain,yes,-0.0000297,0.0000178,-1.669058389,0.096115347,neg,ns,-0.006306249,0.005213896,-1.209508148,0.22738926,neg,ns,0.643230052,0.000485257,0.000179305,2.706312472,0.007180304,pos,ns,0.329283356,Pax6,Pax6_Exon,2,105684910,105684959,105684958,105684959,50,-,AATTCTGGGCAGGTATTACGAGACTGGCTCCATCAGACCCAGGGCAATCG,"Exon (Pax6-206/Pax6, exon 6 of 13)",2,105668900,105697364,28465,1,Pax6-206,16010,Pax6-206;Pax6-207;Pax6-210;Pax6-214;Pax6-208;Pax6-202;Pax6-205;Pax6-225;Pax6-204;Pax6-201;Pax6-203;Pax6-224;Pax6-219;Pax6-221;Pax6-213;Pax6-211;Pax6-222;Pax6-212;Pax6-215;Pax6-223;Pax6-209;Pax6-216,Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,31,78,18508,ENSMUSG00000027168,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
24210,cg13628250,0.0000951,0.0000186,5.107299275,0.000000572,gain,yes,-0.0000528,0.0000316,-1.668995865,0.096127749,neg,ns,0.007117803,0.009264071,0.76832338,0.442879979,pos,ns,0.353713953,-0.000237703,0.000318591,-0.746109069,0.456166936,neg,ns,0.392163446,Macf1,Macf1_Intron,4,123527653,123527702,123527653,123527654,50,+,CGATTCAGACAGCCATCTTACAGGCTCAGAGCTGCAACAAGACAAATTCA,"Intron (Macf1-203/Macf1, intron 5 of 97)",4,123349633,123684360,334728,2,Macf1-203,156658,Macf1-203;Macf1-215;Macf1-218;Macf1-217;Macf1-201;Macf1-205;Macf1-202;Macf1-206;Macf1-213;Macf1-212;Macf1-219,Macf1;Macf1;Macf1;Macf1;Macf1;Macf1;Macf1;Macf1;Macf1;Macf1;Macf1,0;0;0;0;0;0;0;0;-5;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,16,11426,ENSMUSG00000028649,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18476,cg09040561,-0.0000291,0.00000725,-4.007428602,0.0000769,loss,ns,0.0000206,0.0000123,1.6689197,0.096142858,pos,ns,0.007536691,0.003608183,2.088777142,0.037543219,pos,ns,1.425468497,-0.000214112,0.000124085,-1.725523442,0.085429705,neg,ns,0.85076579,Zc3h12b,Zc3h12b_threeUTR,X,95926615,95926664,95926615,95926616,50,+,CGTTCGGTGGCTGATGAGCTCCGCATCAGTGCCAAACTGTCCACAGTGAA,3' UTR,20,95899033,95928230,29198,1,Zc3h12b-201,27582,Zc3h12b-204;Zc3h12b-201;Zc3h12b-203;Zc3h12b-202,Zc3h12b;Zc3h12b;Zc3h12b;Zc3h12b,214937;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,3,547176,ENSMUSG00000035045,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21160,cg22928410,-0.0000189,0.00000503,-3.756879085,0.000205501,loss,ns,-0.0000142,0.00000854,-1.668702632,0.096185931,neg,ns,-0.007737373,0.002501252,-3.093399928,0.002158931,neg,ns,2.665761194,0.000206631,0.000086,2.402186456,0.016885369,pos,ns,0.908619687,Mpped2,Mpped2_Exon,2,106575267,106575316,106575315,106575316,50,+,GAAGGATTCTATCACAGCTCAAACTACAATATCTATCACTAAAACAAACG,"Exon (Gm14014-201/Gm14014-201, exon 2 of 2)",2,106693269,106868356,175088,1,Mpped2-202,-117953,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,16,33,77015,ENSMUSG00000016386,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20633,cg12476049,0.0000166,0.00000324,5.119493583,0.000000539,gain,yes,0.00000918,0.0000055,1.66867766,0.096190888,pos,ns,0.0055639,0.001611798,3.451984228,0.000633765,pos,ns,3.198071464,-0.000105078,0.0000554,-1.89570755,0.05892863,neg,ns,0.109116653,D430041D05Rik,D430041D05Rik_Exon,2,104208172,104208221,104208172,104208173,50,+,CGTTGCTGATGACAGAGCCATTCTCACTGGGCGACCTGCTGGAGGTAACC,"Exon (D430041D05Rik-201/D430041D05Rik, exon 13 of 21)",2,104143073,104410334,267262,2,D430041D05Rik-201,202113,D430041D05Rik-201;D430041D05Rik-202;D430041D05Rik-203;D430041D05Rik-207;D430041D05Rik-206;D430041D05Rik-204,D430041D05Rik;D430041D05Rik;D430041D05Rik;D430041D05Rik;D430041D05Rik;D430041D05Rik,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,241589,ENSMUSG00000068373,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13690,cg19761108,-0.0000566,0.0000143,-3.965933368,0.0000908,loss,ns,0.0000404,0.0000242,1.66866922,0.096192563,pos,ns,-0.011654421,0.007096925,-1.642179005,0.101566894,neg,ns,0.993247829,0.0000766,0.000244063,0.313794782,0.753887955,pos,ns,0.555000771,Pitpnm3,Pitpnm3_Intron,11,72130750,72130799,72130750,72130751,50,+,CGTGGGACCCTGGAGGTGGCATTTACCTCCGGAGTGACTCACTAAGCCTC,"Intron (Pitpnm3-202/Pitpnm3, intron 1 of 18)",11,72047528,72135721,88194,2,Pitpnm3-202,4922,Pitpnm3-202;Pitpnm3-201;Pitpnm3-205,Pitpnm3;Pitpnm3;Pitpnm3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,3,327958,ENSMUSG00000040543,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10356,cg19204561,-0.0000992,0.0000123,-8.097910625,1.29E-14,loss,yes,0.0000347,0.0000208,1.667795941,0.096366014,pos,ns,-0.010217245,0.006098203,-1.675451635,0.094853965,neg,ns,1.022944511,0.000148621,0.000209717,0.708674244,0.479059218,pos,ns,0.734019497,Add3,Add3_Intron,19,53194809,53194858,53194809,53194810,50,-,CGTGACATGAACTTTGTGTGTAAGAGTGGGTTCATTGAATTAAAAAAAAG,"Intron (Add3-203/Add3, intron 1 of 13)",19,53140443,53247399,106957,1,Add3-203,54366,Add3-203;Add3-208;Add3-205;Add3-212;Add3-216;Add3-204;Add3-211;Add3-202;Add3-215;Add3-213;Add3-214;Add3-201;Add3-206;Add3-207;Add3-209;Add3-210,Add3;Add3;Add3;Add3;Add3;Add3;Add3;Add3;Add3;Add3;Add3;Add3;Add3;Add3;Add3;Add3,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;-3188,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,3,27360,ENSMUSG00000025026,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
23009,cg06782334,-0.00000169,0.00000143,-1.18741901,0.235971432,loss,ns,0.00000404,0.00000242,1.667722521,0.096380608,pos,ns,0.001061238,0.000709761,1.495205196,0.135878161,pos,ns,0.866850339,-0.0000323,0.0000244,-1.324351767,0.1863618,neg,ns,0.963425238,Tmco5,Tmco5_Intergenic_upstream,2,116808470,116808519,116808518,116808519,50,-,GCCATAGCTCCGCCTTTGATGAATGCTCTCATTTATGACCACTGATGCCG,Distal Intergenic,2,116878691,116892181,13491,1,Tmco5-202,-70221,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,14,67356,ENSMUSG00000027355,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10856,cg10013179,-0.0000155,0.00000377,-4.105170687,0.0000517,loss,ns,-0.0000107,0.00000641,-1.667543454,0.09641621,neg,ns,0.001120869,0.001877756,0.5969197,0.550996689,pos,ns,0.258851011,-0.0000534,0.0000646,-0.826314796,0.409261056,neg,ns,0.039862612,Klf4,Klf4_Intergenic_upstream,4,55651591,55651640,55651591,55651592,50,+,CGAAACATCAGCCGACAAGAAACGGGGTGATGTCAGACAGCCTTCCAGGA,Distal Intergenic,4,55527143,55532466,5324,2,Klf4-201,-119125,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,3,16600,ENSMUSG00000003032,conserved gene and region,4,55651420,55651614,195,*,195,22,0.692307692,0.947856827,0.112820513,2.64E-18,CpGisland,TRUE,U1,Pr-A
25608,cg14283980,0.0000197,0.00000891,2.210549655,0.027797011,gain,ns,0.0000252,0.0000151,1.667542873,0.096416326,pos,ns,0.007399149,0.004435379,1.668211292,0.096283485,pos,ns,1.016448197,0.000101555,0.000152532,0.665793154,0.506038423,pos,ns,0.154334748,Ebf3,Ebf3_Intron,7,137312905,137312954,137312905,137312906,50,+,CGGTTAATCATGTGAAGTGCCATCGACTTATTGATCGTTTATGTTTTGTT,"Intron (Ebf3-204/Ebf3, intron 3 of 15)",7,137193673,137314445,120773,2,Ebf3-204,1491,Ebf3-204;Ebf3-201;Ebf3-202;Ebf3-203;Ebf3-208;Ebf3-206,Ebf3;Ebf3;Ebf3;Ebf3;Ebf3;Ebf3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,62,84,13593,ENSMUSG00000010476,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
25167,cg08355099,0.00000254,0.0000195,0.130631133,0.896151842,gain,ns,-0.0000552,0.0000331,-1.667425851,0.096439598,neg,ns,0.055845623,0.009695886,5.7597234,2.03E-08,pos,ns,7.692640347,-0.001289668,0.000333441,-3.867758092,0.00013388,neg,ns,0.576080356,Plekha6,Plekha6_Exon,1,133275798,133275847,133275798,133275799,50,-,CGGGCTCCGGGTAGGATGAACTTTTAGATCTTCAGTTGCAAAGAAACCTA,"Exon (Plekha6-201/Plekha6, exon 11 of 27)",1,133181321,133301219,119899,1,Plekha6-204,94477,Plekha6-212;Plekha6-204;Plekha6-202;Plekha6-201;Plekha6-203;Plekha6-209;Plekha6-207;Plekha6-205;Plekha6-206,Plekha6;Plekha6;Plekha6;Plekha6;Plekha6;Plekha6;Plekha6;Plekha6;Plekha6,0;0;0;0;0;6342;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,7,240753,ENSMUSG00000041757,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14779,cg24231456,-0.0000049,0.00000135,-3.623901873,0.000339025,loss,ns,-0.00000383,0.0000023,-1.66724426,0.096475719,neg,ns,-0.000710349,0.000672982,-1.055524326,0.292007503,neg,ns,0.53460599,-0.000029,0.0000231,-1.254180937,0.210721118,neg,ns,0.966302652,Enox1,Enox1_Exon,14,77611331,77611380,77611379,77611380,50,+,GCTTGGGACCATTTCTCGAAAGCCCAGCGCAAGAACATAGACATTTGGCG,"Exon (Enox1-201/Enox1, exon 12 of 19)",14,77156763,77721407,564645,1,Enox1-201,454568,Enox1-201;Enox1-204;Enox1-203,Enox1;Enox1;Enox1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,4,239188,ENSMUSG00000022012,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14232,cg16831573,0.0000785,0.00000489,16.03392302,1.48E-42,gain,yes,-0.0000139,0.00000831,-1.66716658,0.096491174,neg,ns,0.003223493,0.002435279,1.323664785,0.18658969,pos,ns,0.729112357,0.000173288,0.0000837,2.069132615,0.039362115,pos,ns,0.121126541,Cdk5r2,Cdk5r2_Exon,1,74855763,74855812,74855811,74855812,50,+,GCAGGGCTGGCAAGACCAGGCCTTCATTACGCCTGCAAACCTGGTGTTCG,Promoter (<=1kb),1,74854934,74857732,2799,1,Cdk5r2-201,829,Cdk5r2-201,Cdk5r2,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,12570,ENSMUSG00000090071,conserved gene and region,1,74855796,74856469,674,*,674,63,0.672106825,0.834519083,0.09347181,5.07E-46,CpGisland,TRUE,NA,NRS
12342,cg12195518,-0.000000753,0.000000892,-0.844151024,0.399235967,loss,ns,0.00000253,0.00000152,1.667129577,0.096498537,pos,ns,0.00026069,0.000444193,0.586885472,0.557707779,pos,ns,0.253593298,-0.00000686,0.0000153,-0.449218265,0.653588104,neg,ns,0.975104771,Fign,Fign_threeUTR,2,63979020,63979069,63979068,63979069,50,+,TTCTTCTGGTTTACTGGTGGCACAAATTACTACGATTTGGTCCTCAGCCG,3' UTR,2,63971507,64098012,126506,2,Fign-203,118943,Fign-203;Fign-201;Fign-202;Fign-204,Fign;Fign;Fign;Fign,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,14,84,60344,ENSMUSG00000075324,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21560,cg09176584,-0.0000026,0.00000651,-0.400391101,0.689144259,loss,ns,0.0000184,0.0000111,1.667007635,0.096522804,pos,ns,0.004247759,0.003237915,1.311880727,0.190531032,pos,ns,0.720034279,-0.0000252,0.000111352,-0.226410955,0.821031024,neg,ns,0.663028823,Zfhx3,Zfhx3_Intron,8,108301344,108301393,108301392,108301393,50,-,CAAAGGCTAATTTGGTTACCCTCCGGATCCACAATAGCGAAACTGTGTCG,"Intron (Zfhx3-204/Zfhx3, intron 2 of 15)",8,107942644,108961630,1018987,1,Zfhx3-204,358700,Zfhx3-204;Zfhx3-207,Zfhx3;Zfhx3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,114,177,11906,ENSMUSG00000038872,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6241,cg21055442,-0.0000178,0.0000113,-1.580127985,0.115097322,loss,ns,-0.0000319,0.0000191,-1.666917729,0.096540699,neg,ns,-0.006697609,0.005603842,-1.195181771,0.232929543,neg,ns,0.632775425,-0.000123836,0.000192716,-0.642582246,0.520970157,neg,ns,0.71691029,Tshz3,Tshz3_Intergenic_upstream,7,36513070,36513119,36513118,36513119,50,+,AGATTAATTTCATTCCTTAACCTCCCTAATGTGCCTGCTTGCTTGCATCG,Distal Intergenic,7,36698118,36773553,75436,1,Tshz3-201,-184999,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,12,58,243931,ENSMUSG00000021217,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3725,cg05064151,0.0000334,0.0000105,3.183828584,0.001601061,gain,ns,0.0000297,0.0000178,1.66688271,0.09654767,pos,ns,0.001059815,0.005227306,0.202745937,0.839466618,pos,ns,0.075996569,0.0000116,0.000179767,0.064726478,0.948433499,pos,ns,0.804721182,Pou2f2,Pou2f2_Intron,7,25163686,25163735,25163734,25163735,50,+,CCCAGTCAAAACAATTAGCCGCGCTGAGTGTTGAACACGGTGGCGACACG,"Intron (Pou2f2-208/Pou2f2, intron 1 of 4)",7,25120618,25179726,59109,2,Pou2f2-208,15991,Pou2f2-208,Pou2f2,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,29,18987,ENSMUSG00000008496,conserved gene and region,7,25163636,25163773,138,*,138,15,0.543478261,1.493506494,0.108695652,2.55E-12,CpGisland,TRUE,U11,Tr-P
17312,cg27109568,-0.00000563,0.00000148,-3.796555449,0.000176491,loss,ns,0.0000042,0.00000252,1.666572077,0.096609522,pos,ns,0.000934932,0.000738429,1.26610934,0.206424547,pos,ns,0.685238659,-0.0000339,0.0000254,-1.333400289,0.183379438,neg,ns,0.963308382,Vcan,Vcan_threeUTR,13,89656859,89656908,89656907,89656908,50,+,ATATACAGGATTAAAATCAACATTAAATCATCTTATTTACATGGCCATCG,3' UTR,13,89655312,89742509,87198,2,Vcan-203,85601,Vcan-203;Vcan-206;Vcan-202;Vcan-208;Vcan-201;Vcan-204,Vcan;Vcan;Vcan;Vcan;Vcan;Vcan,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,6,13003,ENSMUSG00000021614,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12613,cg11798333,0.00000399,0.00000783,0.509711064,0.610616569,gain,ns,-0.0000222,0.0000133,-1.666568192,0.096610296,neg,ns,0.00842648,0.00389751,2.16201643,0.031381747,pos,ns,1.503322877,-0.000372464,0.000134035,-2.778854621,0.005787973,neg,ns,0.762536404,Ccdc25,Ccdc25_Exon,14,65856457,65856506,65856457,65856458,50,-,CGCCGTGGTCTAACCTGAAGAAAACAGCTGACATGGATGTGGGGCAGATA,"Exon (Ccdc25-201/Ccdc25, exon 6 of 9)",14,65837302,65866607,29306,1,Ccdc25-201,19155,Ccdc25-201;Ccdc25-202,Ccdc25;Ccdc25,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,67179,ENSMUSG00000022035,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18357,cg13771609,0.0000415,0.0000138,3.006113579,0.002862363,gain,ns,0.000039,0.0000234,1.66644684,0.096634468,pos,ns,0.0104551,0.006863779,1.523227878,0.128721138,pos,ns,0.890350131,0.000185192,0.000236045,0.784562848,0.433309035,pos,ns,0.305318007,Otp,Otp_Promoter,13,94869900,94869949,94869948,94869949,50,-,CCTCATCTCCAGAATGCGTGAAAATATCTACTTTCCACTCAGATACACCG,Promoter (5-6kb),13,94875602,94885130,9529,1,Otp-201,-5702,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,27,34,18420,ENSMUSG00000021685,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
27193,cg18454765,0.0000388,0.00000629,6.158458369,2.28E-09,gain,yes,-0.0000178,0.0000107,-1.666178104,0.096688015,neg,ns,0.007024324,0.003131871,2.242852224,0.025612697,pos,ns,1.591544688,-0.000367873,0.000107705,-3.415571386,0.000721289,neg,ns,0.088495357,Mafb,Mafb_Exon,2,160365952,160366001,160366000,160366001,50,+,TTCTGCTTCAGGCGGATCACCTCGTCCTTGGTGAAGCCCCGCAGGTGGCG,"Exon (Mafb-201/Mafb, exon 1 of 1)",2,160363703,160367065,3363,2,Mafb-201,1064,Mafb-201,Mafb,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,14,22,16658,ENSMUSG00000074622,conserved gene and region,2,160365864,160367635,1772,*,1772,185,0.687358917,0.886994873,0.104401806,2.50E-143,CpGisland,TRUE,U3,Pr-B
10475,cg01644832,-0.0000129,0.00000603,-2.131205402,0.033858688,loss,ns,0.0000171,0.0000102,1.666069904,0.096709581,pos,ns,-0.000235727,0.003001311,-0.078541244,0.937448196,neg,ns,0.028052723,-0.0000901,0.000103215,-0.873049986,0.383311584,neg,ns,0.83482228,Npas3,Npas3_Intron,12,53802470,53802519,53802518,53802519,50,+,TTAGCATAATTAGAGTATCGTGGTCAGGCCCTGTGTGATTTCAAGAGACG,"Intron (Npas3-204/Npas3, intron 3 of 10)",12,53248157,54069532,821376,1,Npas3-204,554313,Npas3-204;Npas3-201;Npas3-203,Npas3;Npas3;Npas3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,83,103,27386,ENSMUSG00000021010,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19020,cg26299084,0.0000145,0.00000244,5.946869843,7.37E-09,gain,yes,-0.0000069,0.00000414,-1.666013773,0.09672077,neg,ns,0.001538715,0.001214177,1.267290297,0.206002673,pos,ns,0.686127144,-0.0000469,0.0000418,-1.123349547,0.26215826,neg,ns,0.092672627,Prdm8,Prdm8_Intron,5,98180804,98180853,98180804,98180805,50,+,CGTGGGCTGTCACGCGTCATTGGGCAGATTATGTGCAGCAAACAAAAAGT,"Intron (Prdm8-202/Prdm8, intron 1 of 4)",5,98167198,98187454,20257,1,Prdm8-202,13606,Prdm8-202;Prdm8-201,Prdm8;Prdm8,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,10,77630,ENSMUSG00000035456,conserved gene and region,5,98180684,98180819,136,*,136,10,0.632352941,0.777587193,0.073529412,0.00000115,CpGisland,TRUE,U13,Hc-P
9586,cg02650131,-0.0000106,0.00000735,-1.446122041,0.149153232,loss,ns,0.0000208,0.0000125,1.665966127,0.096730269,pos,ns,-0.002882364,0.003656733,-0.788234884,0.431161655,neg,ns,0.365359869,-0.000143642,0.000125755,-1.14223689,0.254237025,neg,ns,0.778153941,Drd2,Drd2_Exon,9,49403224,49403273,49403272,49403273,50,+,CTCTGCACCGTTATCATGAAGTCTAATGGGAGTTTCCCAGTGAACAGGCG,"Exon (Drd2-201/Drd2, exon 6 of 8)",9,49340627,49408177,67551,1,Drd2-201,62597,Drd2-201,Drd2,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,13489,ENSMUSG00000032259,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9862,cg08767938,0.0000204,0.0000123,1.659967464,0.097932168,gain,ns,0.0000348,0.0000209,1.665957455,0.096731998,pos,ns,0.018831699,0.006114116,3.080036081,0.002255135,pos,ns,2.646827546,-0.000142301,0.000210264,-0.676772481,0.499054991,neg,ns,0.247050712,Nfe2l3,Nfe2l3_Exon,6,51269811,51269860,51269811,51269812,50,+,CGACCACAGCCTCTAGAGACAAAGTTCTGTAGTGCACTGACTTCTATCAT,"Exon (Mir148a-201/Mir148a-201, exon 1 of 1)",6,51432670,51458768,26099,1,Nfe2l3-201,-162810,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,5,18025,ENSMUSG00000029832,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6605,cg22186574,-0.00000418,0.00000115,-3.643003124,0.000315783,loss,ns,0.00000325,0.00000195,1.665697379,0.096783861,pos,ns,0.001182429,0.000571187,2.070125711,0.039268392,pos,ns,1.405956885,-0.0000275,0.0000196,-1.399724671,0.162595692,neg,ns,0.040896752,Rreb1,Rreb1_fiveUTR,13,37827588,37827637,37827588,37827589,50,+,CGGTCTCTTAGGAAACTGCGACCTTAATGGTTGCTAAGGAGCAGGGGAGG,5' UTR,13,37778400,37893849,115450,1,Rreb1-204,49188,Rreb1-204;Rreb1-208;Rreb1-203;Rreb1-207;Rreb1-210;Rreb1-206;Rreb1-202,Rreb1;Rreb1;Rreb1;Rreb1;Rreb1;Rreb1;Rreb1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,10,68750,ENSMUSG00000039087,conserved gene but different region,13,37826930,37827866,937,*,937,108,0.724653148,0.883776986,0.115261473,3.68E-89,CpGisland,TRUE,U1,Pr-A
4868,cg23561549,-0.00000206,0.00000193,-1.07216005,0.284482099,loss,ns,-0.00000545,0.00000327,-1.665495393,0.096824155,neg,ns,-0.001639033,0.000958457,-1.710075266,0.088252525,neg,ns,1.054272862,0.0000121,0.000033,0.367241252,0.713689643,pos,ns,0.931790665,Cad,Cad_Exon,5,31068108,31068157,31068156,31068157,50,+,GGGATATAAGACCATCATGGTGAACTATAACCCAGAGACAGTCAGCACCG,"Exon (Cad-201/Cad, exon 19 of 44)",5,31054780,31078479,23700,1,Cad-201,13328,Cad-201;Cad-206;Cad-204;Cad-211;Cad-203;Cad-207;Cad-209;Cad-210;Cad-205;Cad-208;Cad-212,Cad;Cad;Cad;Cad;Cad;Cad;Cad;Cad;Cad;Cad;Cad,0;13297;0;0;0;6314;1813;-2199;-2312;-2398;-4152,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,69719,ENSMUSG00000013629,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11337,cg27512235,-0.0000453,0.00000717,-6.318628137,9.16E-10,loss,yes,0.0000203,0.0000122,1.665431087,0.096836986,pos,ns,-0.00544543,0.003567944,-1.526209591,0.127977262,neg,ns,0.892867185,0.000172624,0.000122701,1.406864579,0.160469284,pos,ns,0.887461335,Gm8107,Gm8107_Intergenic_downstream,X,57709612,57709661,57709612,57709613,50,-,CGGGCCTAATTCAAAGTAATTCAGGCTCCACAGTGGGGGCAGTGCATAGC,Distal Intergenic,20,57736547,57738555,2009,2,Gm8107-201,28943,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,4,666441,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2602,cg07796671,-0.00000298,0.00000272,-1.095348734,0.274214145,loss,ns,-0.00000769,0.00000462,-1.665422795,0.096838641,neg,ns,-0.000835932,0.001352114,-0.618240473,0.536870788,neg,ns,0.270130226,-0.0000637,0.0000465,-1.369979274,0.171684769,neg,ns,0.946015856,Sec24c,Sec24c_Exon,14,20691765,20691814,20691813,20691814,50,-,ACTGCTGCACCCAGCTGGCTGATCTATATCGAAACTGTGAGACTGACACG,"Exon (Sec24c-201/Sec24c, exon 18 of 23)",14,20674308,20694852,20545,1,Sec24c-201,17457,Fut11-201;Fut11-202;Sec24c-201;Sec24c-202;Sec24c-208;Sec24c-209;Sec24c-213;Sec24c-206;Sec24c-214,Fut11;Fut11;Sec24c;Sec24c;Sec24c;Sec24c;Sec24c;Sec24c;Sec24c,-3154;-3163;0;0;2691;2120;0;0;-9,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,Exon,2,3,218811,ENSMUSG00000039367,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
954,cg26425349,-0.00000293,0.00000332,-0.882872857,0.377989083,loss,ns,0.00000939,0.00000564,1.665239379,0.096875247,pos,ns,0.00456843,0.001651843,2.765656333,0.006021479,pos,ns,2.220296842,-0.000137049,0.0000568,-2.412553285,0.016421516,neg,ns,0.930372114,Usp14,Usp14_Exon,18,10016574,10016623,10016574,10016575,50,-,CGAATACACTGAACTGTGGCATTCATGTAACAAGTGTTACCAAGGTTTGT,"Exon (Usp14-201/Usp14, exon 5 of 16)",18,9993066,10030141,37076,2,Usp14-201,13518,Usp14-201;Usp14-202;Usp14-203;Usp14-209;Usp14-206;Usp14-210,Usp14;Usp14;Usp14;Usp14;Usp14;Usp14,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,59025,ENSMUSG00000047879,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14313,cg05413941,-0.0000436,0.0000113,-3.859435041,0.000138305,loss,ns,0.000032,0.0000192,1.665189589,0.096885186,pos,ns,0.004187811,0.005622275,0.744860519,0.456920354,pos,ns,0.340159496,-0.000322186,0.00019335,-1.666341294,0.096655496,neg,ns,0.749190422,Smg6,Smg6_Intron,11,75148498,75148547,75148498,75148499,50,-,CGGGGTCAGGTTTCCTGAGCAGTTGCAAACATCCCACCTGAAACATAACA,"Intron (Smg6-201/Smg6, intron 15 of 18)",11,74925823,75164448,238626,1,Smg6-201,222675,Smg6-201;Smg6-202,Smg6;Smg6,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,34,103677,ENSMUSG00000038290,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17287,cg21576760,-0.0000174,0.00000853,-2.036910514,0.042508295,loss,ns,0.0000241,0.0000145,1.665131338,0.096896815,pos,ns,-0.003836117,0.004243064,-0.904091323,0.366649014,neg,ns,0.435749478,0.0000256,0.000145919,0.175455243,0.860836484,pos,ns,0.897295797,Ankfn1,Ankfn1_Exon,11,89421216,89421265,89421264,89421265,50,-,AGAAAGGACACATTGTGACCCATTTCCAACACCTCCTGTGTGTAGAGGCG,"Exon (Ankfn1-208/Ankfn1, exon 19 of 22)",11,89391238,89841266,450029,2,Ankfn1-208,420001,Ankfn1-201;Ankfn1-207;Ankfn1-208;Ankfn1-206;Ankfn1-202;Ankfn1-203,Ankfn1;Ankfn1;Ankfn1;Ankfn1;Ankfn1;Ankfn1,-2268;-2268;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,15,382543,ENSMUSG00000047773,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3850,cg24038545,0.00000904,0.00000625,1.446365519,0.14908501,gain,ns,-0.0000177,0.0000106,-1.66482587,0.096957815,neg,ns,-0.005638062,0.00310959,-1.813120859,0.070780215,neg,ns,1.150088123,0.000114695,0.000106939,1.072529875,0.284316315,pos,ns,0.868800545,Trp63,Trp63_Intergenic_upstream,16,25580353,25580402,25580401,25580402,50,-,GTTCTGGCATCCCAGTAAAGCTTTGCTTCCCATGGCAACTCCAGCCTACG,Distal Intergenic,16,25683763,25821318,137556,1,Trp63-206,-103410,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,8,22061,ENSMUSG00000022510,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3607,cg22224906,-0.00000412,0.00000241,-1.711723574,0.087947776,loss,ns,0.00000681,0.00000409,1.664777859,0.096967405,pos,ns,0.003221935,0.001198068,2.689276603,0.007548259,pos,ns,2.122153185,-0.000147095,0.0000412,-3.57015146,0.000413351,neg,ns,0.952717429,Gm12067,Gm12067_Intron,11,24729696,24729745,24729696,24729697,50,-,CGGAGAAAAATATTAGGACTCATTTATTTATGAACCTGTTAATAATGAGG,"Intron (Gm10466-201/Gm10466-201, intron 1 of 2)",11,24552438,24553962,1525,2,Gm12067-201,-175783,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,58,100417843,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20386,cg26813903,0.0000194,0.00000449,4.321688357,0.0000209,gain,ns,-0.0000127,0.00000762,-1.664730294,0.096976907,neg,ns,0.003460623,0.002232314,1.550240479,0.122104076,pos,ns,0.913269837,-0.0000753,0.0000768,-0.980646698,0.32753169,neg,ns,0.049593028,Hoxc5,Hoxc5_Intron,15,103014706,103014755,103014706,103014707,50,+,CGACATAATTGGATCATAGGAACAAAACGTGTATAAAAGGCAATATTCAA,"Intron (Hoxc5-202/Hoxc5, intron 1 of 1)",15,102967443,103015676,48234,1,Hoxc5-202,47263,Hoxc4-202;Hoxc5-202;Hoxc5-201;Hoxc6-202;Hoxc6-203;Hoxc6-201,Hoxc4;Hoxc5;Hoxc5;Hoxc6;Hoxc6;Hoxc6,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,46,134,15424,ENSMUSG00000022485,mapped to different genes,15,103014167,103014734,568,*,568,41,0.588028169,0.835773758,0.072183099,1.73E-25,CpGisland,TRUE,U13,Hc-P
15246,cg03323924,-0.0000024,0.00000559,-0.429506435,0.667853079,loss,ns,-0.0000158,0.00000949,-1.66469675,0.096983609,neg,ns,-0.004443167,0.002781423,-1.597443831,0.111185596,neg,ns,0.953951473,-0.0000262,0.0000957,-0.274238035,0.784084351,neg,ns,0.707459295,Gm8275,Gm8275_Intergenic_downstream,12,79974786,79974835,79974786,79974787,50,-,CGGCAAGGAGACAATTGTGGTAGTCAAGACAGGATGTGAATAAGACATAA,Distal Intergenic,12,79979428,79979851,424,2,Gm8275-201,5065,Gm8275-201,Gm8275,5016,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,666754,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3669,cg01242319,0.00005,0.0000116,4.309939459,0.000022,gain,ns,-0.0000328,0.0000197,-1.664617225,0.096999498,neg,ns,-0.007569851,0.005777554,-1.310217371,0.191092289,neg,ns,0.718756837,0.000405895,0.00019869,2.042860203,0.041911778,pos,ns,0.840827675,Erfl,Erfl_Promoter,7,24953481,24953530,24953481,24953482,50,+,CGCAAACTTTAATTAACACTTTGAGTTAATTAGTTCGAGATCATTTAGGA,Promoter (8-9kb),7,24927445,24944494,17050,2,Erfl-201,-8987,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,29,36,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
20350,cg20457391,0.000126336,0.00000841,15.0145314,1.13E-38,gain,yes,-0.0000238,0.0000143,-1.664491447,0.097024633,neg,ns,0.008129009,0.004187849,1.941093895,0.053153005,pos,ns,1.274472174,0.000057,0.00014402,0.395567453,0.692696232,pos,ns,0.238101658,Hoxc5,Hoxc5_Exon,15,103009987,103010036,103009987,103009988,50,-,CGAATGAATTCGCACAGTGGTGAGTTTTACAGCTCCGAGATATAAATTAA,"Exon (Hoxc6-202/Hoxc6, exon 2 of 3)",15,102967443,103015676,48234,1,Hoxc5-202,42544,Hoxc5-202;Hoxc5-201;Hoxc6-202;Hoxc6-203;Hoxc6-201,Hoxc5;Hoxc5;Hoxc6;Hoxc6;Hoxc6,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,72,134,15424,ENSMUSG00000022485,mapped to different genes,15,103009987,103010218,232,*,232,17,0.556034483,0.969041769,0.073275862,5.22E-11,CpGisland,TRUE,U13,Hc-P
5379,cg18221849,0.00000674,0.00000471,1.430050654,0.153709562,gain,ns,0.0000133,0.00000801,1.664458203,0.097031277,pos,ns,0.00522016,0.002346193,2.22494875,0.026804156,pos,ns,1.571797856,-0.0000297,0.0000807,-0.367497302,0.713498869,neg,ns,0.874437947,Hnrnpm,Hnrnpm_Intron,17,33669961,33670010,33670009,33670010,50,-,AAACATAGCTACTGTAACATGAGCACTCACTGCCTTCCTGATTTCATTCG,"Intron (Hnrnpm-206/Hnrnpm, intron 3 of 15)",17,33646233,33686860,40628,2,Hnrnpm-206,16850,Hnrnpm-206;Hnrnpm-202;Hnrnpm-205;Hnrnpm-201;Hnrnpm-207;Hnrnpm-212;Hnrnpm-215;Hnrnpm-208;Hnrnpm-209;Hnrnpm-203,Hnrnpm;Hnrnpm;Hnrnpm;Hnrnpm;Hnrnpm;Hnrnpm;Hnrnpm;Hnrnpm;Hnrnpm;Hnrnpm,0;0;0;0;0;0;0;0;0;15393,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,7,76936,ENSMUSG00000059208,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24060,cg27183776,0.0000513,0.00000675,7.593996048,3.68E-13,gain,yes,0.0000191,0.0000115,1.664445945,0.097033727,pos,ns,0.003278194,0.003359599,0.975769524,0.329939502,pos,ns,0.481565685,-0.00000944,0.000115536,-0.081714818,0.934926227,neg,ns,0.808697566,Clybl,Clybl_Intron,14,122367316,122367365,122367364,122367365,50,-,GAGCTGCCGCCACGGAGCTTGGTCCCAAACTATACTGTACTTCACACTCG,"Intron (Clybl-201/Clybl, intron 2 of 7)",14,122181704,122402234,220531,1,Clybl-201,185612,Clybl-201;Clybl-202,Clybl;Clybl,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,13,69634,ENSMUSG00000025545,mapped to different genes,14,122367319,122367490,172,*,172,14,0.552325581,1.076923077,0.081395349,9.34E-10,CpGisland,TRUE,U15,NS
19725,cg14701140,0.0000155,0.0000189,0.822716945,0.411301368,gain,ns,-0.0000534,0.0000321,-1.664207189,0.097081457,neg,ns,-0.003607506,0.009402838,-0.383661452,0.70149238,neg,ns,0.153977042,0.0000236,0.000323363,0.072989233,0.941861756,pos,ns,0.742890148,Scn8a,Scn8a_Exon,15,100936358,100936407,100936406,100936407,50,+,GATAGTTTCAAGCCTTTCACCCCTGAGTCACTGGCAAACATTGAGAGGCG,"Exon (Scn8a-212/Scn8a, exon 2 of 15)",15,100870645,101011064,140420,1,Scn8a-212,65713,Scn8a-211;Scn8a-218;Scn8a-212;Scn8a-206;Scn8a-201;Scn8a-204;Scn8a-213;Scn8a-203;Scn8a-214;Scn8a-202;Scn8a-205;Scn8a-207;Scn8a-208,Scn8a;Scn8a;Scn8a;Scn8a;Scn8a;Scn8a;Scn8a;Scn8a;Scn8a;Scn8a;Scn8a;Scn8a;Scn8a,66500;66500;0;65697;0;0;0;0;64938;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,18,24,20273,ENSMUSG00000023033,conserved gene and region,15,100936149,100936466,318,*,318,23,0.594339623,0.820139045,0.072327044,1.38E-14,CpGisland,TRUE,NA,NRS
4324,cg21227553,-0.00000184,0.00000166,-1.105672787,0.269725514,loss,ns,0.0000047,0.00000283,1.66418844,0.097085206,pos,ns,0.000123727,0.000828244,0.149384262,0.881347566,pos,ns,0.05485279,-0.0000125,0.0000285,-0.437441857,0.662095529,neg,ns,0.971975218,Ccdc85a,Ccdc85a_Exon,11,28399395,28399444,28399395,28399396,50,-,CGTCCTATTCCTCGGCACCCTTGCCACCACTGCAAGACCCGCCGGGCTCT,"Exon (Ccdc85a-206/Ccdc85a, exon 4 of 6)",11,28385685,28584296,198612,2,Ccdc85a-202,184852,Ccdc85a-202;Ccdc85a-204;Ccdc85a-201;Ccdc85a-206;Ccdc85a-207;Ccdc85a-205,Ccdc85a;Ccdc85a;Ccdc85a;Ccdc85a;Ccdc85a;Ccdc85a,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,3,216613,ENSMUSG00000032878,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
502,cg18491911,0.0000972,0.00000901,10.78587902,3.05E-23,gain,yes,-0.0000255,0.0000153,-1.66407729,0.097107433,neg,ns,-0.005187931,0.004483338,-1.157157998,0.248098665,neg,ns,0.605375572,0.000469578,0.000154182,3.045616254,0.002521374,pos,ns,0.809883957,Celf2,Celf2_Exon,2,6607906,6607955,6607954,6607955,50,+,GGCTTTGATTGCATTCTGTGCCATTGCCCTTGTAGAAAATGTGACAAACG,"Exon (Celf2-201/Celf2, exon 8 of 16)",2,6539694,7396000,856307,2,Celf2-201,788045,Celf2-201;Celf2-202;Celf2-204;Celf2-214;Celf2-206;Celf2-226;Celf2-223;Celf2-224;Celf2-221;Celf2-205;Celf2-211;Celf2-213;Celf2-225;Celf2-228;Celf2-217;Celf2-227;Celf2-212;Celf2-210,Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,24,14007,ENSMUSG00000002107,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5515,cg04347491,-0.00000463,0.00000319,-1.450086976,0.148045241,loss,ns,0.00000903,0.00000543,1.664076189,0.097107653,pos,ns,0.004283898,0.001590007,2.694264102,0.007438814,pos,ns,2.128496279,-0.000145667,0.0000547,-2.663973644,0.00812617,neg,ns,0.932087742,Pbx3,Pbx3_Intergenic_downstream,2,34167463,34167512,34167463,34167464,50,+,CGTCAGTTCAGATCTAGCAGATTGCTAATAAAATTCTGGATTTCCATATT,Distal Intergenic,2,34172873,34288852,115980,2,Pbx3-210,121340,Pbx3-202;Pbx3-201,Pbx3;Pbx3,0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,82,18516,ENSMUSG00000038718,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15039,cg01875689,-0.00000482,0.00000318,-1.517890215,0.1300612,loss,ns,0.00000898,0.0000054,1.664055339,0.097111823,pos,ns,0.002724994,0.001581303,1.723258026,0.085839013,pos,ns,1.066315285,-0.000101439,0.0000544,-1.865351569,0.063076663,neg,ns,0.921263092,Gm6317,Gm6317_Intergenic_upstream,13,78581011,78581060,78581059,78581060,50,+,CTCAGTGAGTCATTAATTAAACCCAGAATCTTTATAAGTGACCTGTTGCG,Distal Intergenic,13,78372987,78379128,6142,2,Gm6317-201,-201883,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,11,622365,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14909,cg13133009,0.00000543,0.00000301,1.806196087,0.071857468,gain,ns,0.0000085,0.00000511,1.663941258,0.097134641,pos,ns,0.005082152,0.001497289,3.394236328,0.000777686,pos,ns,3.109195578,-0.000135449,0.0000515,-2.63050629,0.008951596,neg,ns,0.925594207,Fam222b,Fam222b_fiveUTR,11,78153873,78153922,78153873,78153874,50,+,CGCTACAGCCCCTACCCGACACAGGCTGCCACCAAGGCAGGCCTGCTTGC,5' UTR,11,78094660,78156700,62041,1,Fam222b-201,59213,Fam222b-201;Fam222b-202;Fam222b-203;Gm12571-201;Traf4-203,Fam222b;Fam222b;Fam222b;Gm12571;Traf4,0;0;0;-4435;11667,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,10,21,216971,ENSMUSG00000037750,conserved gene and region,11,78153825,78153900,76,*,76,9,0.631578947,1.266666667,0.118421053,8.12E-08,CpGisland,TRUE,U10,Tr-S
19673,cg11938576,-0.00000139,0.00000229,-0.608659485,0.543195899,loss,ns,0.00000647,0.00000389,1.663835997,0.097155699,pos,ns,-0.000888975,0.001138602,-0.780760137,0.43553937,neg,ns,0.360972581,0.0000347,0.0000392,0.886457947,0.37605796,pos,ns,0.946916715,Lin54,Lin54_Exon,5,100485647,100485696,100485647,100485648,50,+,CGTGGCTGTAGAGTCACCAGTAGAATTTATGTTGACAATTTCTTCCAGTT,"Exon (Lin54-201/Lin54, exon 2 of 13)",5,100441918,100500592,58675,2,Lin54-208,14896,Lin54-208;Lin54-204;Lin54-210;Lin54-201;Lin54-202;Lin54-206;Lin54-205;Lin54-209;Lin54-203;Lin54-207,Lin54;Lin54;Lin54;Lin54;Lin54;Lin54;Lin54;Lin54;Lin54;Lin54,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,5,231506,ENSMUSG00000035310,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1756,cg06620770,0.0000142,0.00000525,2.702709449,0.007256748,gain,ns,0.0000148,0.00000892,1.663490627,0.097224818,pos,ns,0.004845324,0.002614114,1.853523985,0.064757212,pos,ns,1.188711859,-0.0000732,0.0000899,-0.814267091,0.416117002,neg,ns,0.069179598,Kctd1,Kctd1_fiveUTR,18,15063616,15063665,15063616,15063617,50,+,CGCAGCGCTGAGAGCTTTTGTGTTTAATGACCTTCAGCTACCGGGAGGCA,Promoter (<=1kb),18,14969400,15063618,94219,2,Kctd1-202,0,Kctd1-201;Kctd1-202;Kctd1-206;Kctd1-205,Kctd1;Kctd1;Kctd1;Kctd1,0;0;0;-1727,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,9,24,106931,ENSMUSG00000036225,conserved gene but different region,18,15063315,15063752,438,*,438,43,0.673515982,0.892352885,0.098173516,1.42E-32,CpGisland,TRUE,U3,Pr-B
11236,cg19999314,0.000115665,0.0000153,7.553981199,4.78E-13,gain,yes,0.0000433,0.000026,1.663450002,0.097232951,pos,ns,0.02674421,0.007620855,3.509345034,0.000515772,pos,ns,3.287542591,-0.000237088,0.000262081,-0.904638737,0.366359301,neg,ns,0.47991494,Nr4a2,Nr4a2_Intron,2,57109359,57109408,57109407,57109408,50,-,TTTATAACAATTAAACCTCTCTCTGACCAGTAAGGAAATTAGATGTTCCG,"Intron (Nr4a2-201/Nr4a2, intron 5 of 7)",2,57106830,57115038,8209,2,Nr4a2-201,5630,Nr4a2-201;Nr4a2-203;Nr4a2-206;Nr4a2-202;Nr4a2-205;Nr4a2-204,Nr4a2;Nr4a2;Nr4a2;Nr4a2;Nr4a2;Nr4a2,0;0;0;0;0;4965,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,25,18227,ENSMUSG00000026826,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
24364,cg17100154,0.0000412,0.0000164,2.505439173,0.012742465,gain,ns,0.0000464,0.0000279,1.663449787,0.097232994,pos,ns,0.023559464,0.008175925,2.881565678,0.004233174,pos,ns,2.373333917,-0.000877442,0.000281169,-3.120686994,0.001974133,neg,ns,0.230682888,Pianp,Pianp_fiveUTR,6,124998568,124998617,124998568,124998569,50,-,CGGTAGGTGCTCAAGGAATCACAAGGTTCTTGGCTCTAAATTAAGATCCA,Promoter (<=1kb),6,124998610,125002143,3534,1,Pianp-204,0,Pianp-201;Pianp-206;Pianp-202;Pianp-207;Pianp-204;Pianp-205;Pianp-203,Pianp;Pianp;Pianp;Pianp;Pianp;Pianp;Pianp,0;0;0;0;0;-22;-1045,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,1,319352,ENSMUSG00000030329,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
27388,cg04532288,0.00000607,0.0000122,0.496697171,0.619754653,gain,ns,-0.0000345,0.0000208,-1.663440438,0.097234866,neg,ns,0.020363573,0.006082086,3.348123158,0.00091392,pos,ns,3.039091712,-0.000788846,0.000209162,-3.771451074,0.000194359,neg,ns,0.160956587,Pou2f1,Pou2f1_Intron,1,166001180,166001229,166001180,166001181,50,+,CGTTGGGCTGTGAGTGGCTGTTATTAAAGGTCTGAATTACTAAACATGAG,"Intron (Pou2f1-208/Pou2f1, intron 1 of 16)",1,165865154,166002678,137525,2,Pou2f1-208,1449,Pou2f1-208;Pou2f1-206;Pou2f1-216;Pou2f1-209;Pou2f1-201;Pou2f1-215;Pou2f1-214;Pou2f1-211;Pou2f1-212,Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,18,18986,ENSMUSG00000026565,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
11856,cg13360217,0.0000104,0.00000737,1.41478262,0.158135903,gain,ns,-0.0000208,0.0000125,-1.663419214,0.097239115,neg,ns,-0.010060789,0.003669818,-2.741495527,0.006471138,neg,ns,2.189019308,0.000394174,0.000126205,3.123293508,0.001957266,pos,ns,0.830822319,Tle3,Tle3_Intergenic_upstream,9,61205476,61205525,61205476,61205477,50,+,CGTCTAGAATAAATATTCTTGAAATGGAGCAAGTTATAAATAAGCAAGCA,Distal Intergenic,9,61372366,61418497,46132,1,Tle3-218,-166841,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,30,21887,ENSMUSG00000032280,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13309,cg15052056,0.0000192,0.00000317,6.066648001,3.80E-09,gain,yes,-0.00000896,0.00000539,-1.663401444,0.097242673,neg,ns,-0.003448332,0.001578037,-2.185203508,0.029622217,neg,ns,1.528382436,0.000116051,0.0000543,2.138452246,0.033261474,pos,ns,0.078814321,Egr3,Egr3_Promoter,14,70076817,70076866,70076865,70076866,50,-,CGCCCCTTCGGCTGGGCTTTGTCTGTCCATATATGGGCAGCTACGTCACG,Promoter (<=1kb),14,70077203,70079955,2753,1,Egr3-201,-386,Egr3-201;Egr3-204;Egr3-203;Egr3-202,Egr3;Egr3;Egr3;Egr3,0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,10,19,13655,ENSMUSG00000033730,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
22158,cg17790372,-0.00000524,0.00000254,-2.063264346,0.039919837,loss,ns,0.00000718,0.00000432,1.663287694,0.09726545,pos,ns,0.003344531,0.001264973,2.643954013,0.008611285,pos,ns,2.064932041,-0.0000955,0.0000435,-2.195589051,0.028862181,neg,ns,0.948124663,Gm49496,Gm49496_fiveUTR,13,111466908,111466957,111466908,111466909,50,-,CGCCATTTAGGTCCAGTCTCTCCAACTCAGTGAAACAAGGCTTCAACACC,5' UTR,13,111439229,111549947,110719,2,Gm49496-201,82990,Gm49496-201;Gpbp1-201;Gpbp1-202;Gpbp1-204,Gm49496;Gpbp1;Gpbp1;Gpbp1,0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3401,cg05433039,0.0000802,0.00000767,10.45706711,4.03E-22,gain,yes,-0.0000217,0.000013,-1.663118583,0.09729932,neg,ns,0.006402952,0.00381597,1.677935803,0.094367451,pos,ns,1.025177778,-0.0000741,0.000131231,-0.564284794,0.572968361,neg,ns,0.148945339,Kcnma1,Kcnma1_Exon,14,24003800,24003849,24003800,24003801,50,+,CGCCAGAGCAAGATGATGAAGAGGCCCCCGAAGAAAGTCACCATGGAGGA,"Exon (4930519K11Rik-201/4930519K11Rik-201, exon 1 of 4)",14,23292291,24004859,712569,2,Kcnma1-205,1010,Kcnma1-205;Kcnma1-212;Kcnma1-211;Kcnma1-229;Kcnma1-234;Kcnma1-223;Kcnma1-214;Kcnma1-216;Kcnma1-219;Kcnma1-220;Kcnma1-224;Kcnma1-233;Kcnma1-236;Kcnma1-237;Kcnma1-213;Kcnma1-228;Kcnma1-221;Kcnma1-225;Kcnma1-226;Kcnma1-230;Kcnma1-235;Kcnma1-238;Kcnma1-215,Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,16,41,16531,ENSMUSG00000063142,conserved gene and region,14,24003668,24003829,162,*,162,18,0.691358025,0.954500818,0.111111111,6.60E-15,CpGisland,TRUE,U3,Pr-B
8202,cg26983302,0.000000341,0.00000253,0.13463534,0.892987569,gain,ns,-0.00000715,0.0000043,-1.662961412,0.097330807,neg,ns,-0.001474354,0.001259579,-1.170512829,0.242693679,neg,ns,0.614941536,0.0000116,0.0000433,0.26882227,0.788245272,pos,ns,0.909392785,Kmt2a,Kmt2a_Exon,9,44846948,44846997,44846996,44846997,50,+,CCAAGGGCAACAGCTGCTCTTCTGCAGACATGTTTAATCCGGGGTCCTCG,"Exon (Kmt2a-201/Kmt2a, exon 4 of 36)",9,44803355,44881296,77942,2,Kmt2a-201,34299,Kmt2a-201;Kmt2a-202;Kmt2a-205;Kmt2a-203;Kmt2a-206,Kmt2a;Kmt2a;Kmt2a;Kmt2a;Kmt2a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,10,214162,ENSMUSG00000002028,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19669,cg22571854,-0.000000363,0.00000168,-0.216593257,0.828667805,loss,ns,-0.00000474,0.00000285,-1.662870935,0.097348936,neg,ns,-0.001375761,0.00083446,-1.648685101,0.100225176,neg,ns,0.999023173,0.0000359,0.0000287,1.249893264,0.212281298,pos,ns,0.956770475,Klhl10,Klhl10_Exon,11,100456772,100456821,100456772,100456773,50,+,CGATGAGTGGTATGATGCTCATGACATGAGTATATACCGCAGTGCTCTGA,"Exon (Klhl10-201/Klhl10, exon 5 of 5)",11,100441917,100457022,15106,1,Klhl10-201,14855,Klhl10-201,Klhl10,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,66720,ENSMUSG00000001558,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21815,cg00234132,0.0000808,0.000011,7.374493661,1.52E-12,gain,yes,-0.000031,0.0000186,-1.662769083,0.097369348,neg,ns,0.008418909,0.005453607,1.543732183,0.123673407,pos,ns,0.907723676,-0.000514623,0.000187549,-2.743939287,0.006424316,neg,ns,0.167045243,Lmo1,Lmo1_Intergenic_upstream,7,109191916,109191965,109191916,109191917,50,-,CGGCCCTCCGGACGTGACAGCTCCCACTTAGCCTGAAGAGACATGAAAGA,Distal Intergenic,7,109138675,109175207,36533,2,Lmo1-202,-16758,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,34,66,109594,ENSMUSG00000036111,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6661,cg17125070,-0.0000118,0.00000735,-1.607516738,0.108959051,loss,ns,-0.0000208,0.0000125,-1.662761125,0.097370943,neg,ns,-0.01116332,0.003658957,-3.050956767,0.002478255,neg,ns,2.605854095,0.000120008,0.000125831,0.953718376,0.340969277,pos,ns,0.811691872,Dennd1a,Dennd1a_Intron,2,37945841,37945890,37945889,37945890,50,+,ACAGAAATTCAATTCTTGCAAAGAAAAGCATCTGCTCTCTAGTGGGAACG,"Intron (Dennd1a-201/Dennd1a, intron 12 of 21)",2,37798991,38287375,488385,2,Dennd1a-201,341485,Dennd1a-201;Dennd1a-207;Dennd1a-210;Dennd1a-204,Dennd1a;Dennd1a;Dennd1a;Dennd1a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,46,227801,ENSMUSG00000035392,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19801,cg23516082,-0.0000655,0.00000769,-8.508691611,7.63E-16,loss,yes,-0.0000217,0.0000131,-1.662726087,0.097377966,neg,ns,0.008489145,0.003829856,2.216570158,0.02737807,pos,ns,1.562597163,-0.000683807,0.000131708,-5.191826864,0.000000378,neg,yes,0.666589661,Acvrl1,Acvrl1_Intron,15,101139989,101140038,101139989,101139990,50,-,CGCATTATAAACACTGTAATCTGGTGTCAGCCCCGGCACTGATTAAAGGC,"Intron (Acvrl1-201/Acvrl1, intron 9 of 10)",15,101128522,101145336,16815,1,Acvrl1-201,11467,Acvrl1-201;Acvrl1-210;Acvrl1-204;Acvrl1-202;Acvrl1-203;Acvrl1-206;Acvrl1-207;Acvrl1-205;Acvrl1-209;Acvrl1-208,Acvrl1;Acvrl1;Acvrl1;Acvrl1;Acvrl1;Acvrl1;Acvrl1;Acvrl1;Acvrl1;Acvrl1,0;0;0;0;0;0;0;0;4332;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,11482,ENSMUSG00000000530,conserved gene and region,15,101139989,101140116,128,*,128,9,0.5859375,0.819345662,0.0703125,0.00000707,CpGisland,TRUE,NA,NRS
23094,cg02939577,0.00010069,0.00001,10.0722249,7.90E-21,gain,yes,-0.0000282,0.000017,-1.6626631,0.097390592,neg,ns,0.017486249,0.004975491,3.514476742,0.000506285,pos,ns,3.295604756,-0.000641302,0.000171107,-3.747966461,0.00021261,neg,ns,0.380211635,Rnf220,Rnf220_fiveUTR,4,117288513,117288562,117288513,117288514,50,+,CGCTGATCACCTTTGTGAAATGTGGGCCGACTGATAACTCAAAGAGCCCT,5' UTR,4,117271463,117497052,225590,2,Rnf220-201,208490,Rnf220-201;Rnf220-203;Rnf220-212;Rnf220-202;Rnf220-205;Rnf220-209;Rnf220-213;Rnf220-210;Rnf220-206;Rnf220-208,Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,152,66743,ENSMUSG00000028677,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11586,cg02107894,-0.000000819,0.00000702,-0.116585555,0.907263976,loss,ns,-0.0000198,0.0000119,-1.662548421,0.097413583,neg,ns,-0.004140548,0.003496056,-1.184348228,0.237182498,neg,ns,0.624917361,-0.0000454,0.000120229,-0.377360177,0.706164168,neg,ns,0.862366641,Ube3a,Ube3a_Exon,7,59272059,59272108,59272059,59272060,50,+,CGTATGGATAATAATGCAGCAGCTATTAAAGCCCTCGAGCTTTATAAGAT,"Exon (Ube3a-216/Ube3a, exon 3 of 9)",7,59228750,59289819,61070,1,Ube3a-216,43309,Ube3a-216;Ube3a-201;Ube3a-213;Ube3a-203;Ube3a-210;Ube3a-204;Ube3a-207;Ube3a-217;Ube3a-218;Ube3a-202;Ube3a-205,Ube3a;Ube3a;Ube3a;Ube3a;Ube3a;Ube3a;Ube3a;Ube3a;Ube3a;Ube3a;Ube3a,0;0;0;0;0;0;0;0;0;0;-4827,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,22215,ENSMUSG00000025326,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14438,cg25291023,-0.00000248,0.00000134,-1.851362158,0.065068358,loss,ns,-0.00000378,0.00000227,-1.662467948,0.097429719,neg,ns,-0.002652461,0.000666212,-3.981408216,0.0000854,neg,ns,4.068543003,0.00000934,0.0000229,0.40757831,0.68386461,pos,ns,0.978260439,Crk,Crk_Exon,11,75692513,75692562,75692513,75692514,50,-,CGTCGAGAAGTATAGACCTGCCTCCGCCTCAGTATCGGCTCTGATTGGAG,"Exon (Crk-201/Crk, exon 2 of 3)",11,75679259,75706065,26807,1,Crk-201,13254,Crk-201;Crk-204;Crk-203;Crk-202;Crk-205,Crk;Crk;Crk;Crk;Crk,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,7,12928,ENSMUSG00000017776,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13317,cg02040024,0.000238198,0.0000224,10.64663625,9.14E-23,gain,yes,-0.0000632,0.000038,-1.662319439,0.097459502,neg,ns,0.031363296,0.011135325,2.816558746,0.005165402,pos,ns,2.286895859,0.000321031,0.000382943,0.838327083,0.402492947,pos,ns,0.303044054,Egr3,Egr3_Exon,14,70078960,70079009,70079008,70079009,50,+,CTTCCAGCCAGCCCCCGGCAACAAGACCGTGACCTACTTGGGAAAGTTCG,"Exon (Egr3-201/Egr3, exon 3 of 3)",14,70077203,70079955,2753,1,Egr3-201,1757,Egr3-201;Egr3-204;Egr3-203;Egr3-202,Egr3;Egr3;Egr3;Egr3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,19,13655,ENSMUSG00000033730,conserved gene but different region,14,70078306,70079015,710,*,710,70,0.654929578,0.919416901,0.098591549,8.62E-53,CpGisland,TRUE,NA,NRS
10346,cg19727333,-0.0000361,0.0000105,-3.427790573,0.000690733,loss,ns,0.0000298,0.0000179,1.662295705,0.097464263,pos,ns,-0.004042832,0.005243384,-0.771034915,0.441273504,neg,ns,0.355292149,0.000285967,0.00018032,1.585892335,0.113783228,pos,ns,0.743556772,Plac1,Plac1_Intron,X,53129648,53129697,53129648,53129649,50,-,CGACAAGAGGCCCACAGTACCTGGGTAGGATTTCATTCAGCGAATGAATG,"Intron (Plac1-201/Plac1, intron 1 of 2)",20,53069995,53240111,170117,2,Plac1-201,110414,Plac1-201;Plac1-203,Plac1;Plac1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,56096,ENSMUSG00000061082,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12279,cg25986664,0.00000061,0.00000308,0.197793207,0.843336496,gain,ns,0.00000871,0.00000524,1.662166999,0.097490082,pos,ns,0.001317112,0.00153505,0.858025584,0.391541228,pos,ns,0.407222501,-0.0000574,0.0000528,-1.086560138,0.278075393,neg,ns,0.954944737,Xkr6,Xkr6_Exon,14,63819204,63819253,63819204,63819205,50,-,CGATAGTCTTGACCGAGAATGCTGCCTTGACGTTCCTTTGGTATTTTTAC,"Exon (Xkr6-201/Xkr6, exon 3 of 3)",14,63606503,63820809,214307,1,Xkr6-201,212701,Xkr6-201;Xkr6-202,Xkr6;Xkr6,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,11,219149,ENSMUSG00000035067,conserved gene and region,14,63819136,63819407,272,*,272,17,0.507352941,0.974499473,0.0625,6.51E-10,CpGisland,TRUE,NA,NRS
16130,cg16125623,-0.00000987,0.00000328,-3.012461842,0.002804855,loss,ns,-0.00000925,0.00000556,-1.661853114,0.097553071,neg,ns,-0.002036048,0.001630216,-1.248943218,0.212628129,neg,ns,0.672379282,0.000076,0.0000561,1.356110898,0.176050821,pos,ns,0.928028141,Aatf,Aatf_Intron,11,84481715,84481764,84481763,84481764,50,+,ACATCTATTAAAATATGCCTTTAATTCTCCCACAATCTTAAAAAACACCG,"Intron (Aatf-201/Aatf, intron 5 of 12)",11,84422855,84513522,90668,2,Aatf-201,31758,Aatf-201;Aatf-202;Aatf-204,Aatf;Aatf;Aatf,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,10,56321,ENSMUSG00000018697,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3856,cg17705334,-0.0000561,0.00000959,-5.848260561,1.26E-08,loss,yes,0.0000271,0.0000163,1.661642413,0.097595373,pos,ns,-0.00084062,0.004773569,-0.176098893,0.860331231,neg,ns,0.065334311,0.0000692,0.000164163,0.421593449,0.673613977,pos,ns,0.763465902,Zmiz1,Zmiz1_Exon,14,25607362,25607411,25607362,25607363,50,-,CGTGCACCAGCACCACCCCTGCGTGCAAGTTTGAAATGTGAGCTGCCTCC,"Exon (Zmiz1-203/Zmiz1, exon 1 of 3)",14,25459224,25666743,207520,1,Zmiz1-208,148138,Zmiz1-208;Zmiz1-201;Zmiz1-202;Zmiz1-203;Zmiz1-204,Zmiz1;Zmiz1;Zmiz1;Zmiz1;Zmiz1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,15,328365,ENSMUSG00000007817,conserved gene but different region,14,25607271,25607384,114,*,114,15,0.780701754,0.868902439,0.131578947,1.17E-13,CpGisland,TRUE,NA,NRS
5886,cg10002888,-0.00000553,0.0000111,-0.498221551,0.618681171,loss,ns,-0.0000313,0.0000188,-1.661624428,0.097598984,neg,ns,0.005098127,0.005519568,0.923645996,0.356389021,pos,ns,0.448075684,-0.000133775,0.000189818,-0.704757671,0.481490191,neg,ns,0.51719093,Prrc2a,Prrc2a_Exon,17,35161402,35161451,35161450,35161451,50,+,TCCTGGTCGCCAGCCGCCTGCAGGGTCGGAAATTCCTCTCGAGAGAATCG,"Exon (Prrc2a-201/Prrc2a, exon 6 of 31)",17,35149076,35164897,15822,2,Prrc2a-201,3446,Prrc2a-201;Prrc2a-206;Prrc2a-203,Prrc2a;Prrc2a;Prrc2a,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,13,53761,ENSMUSG00000024393,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2919,cg00418090,0.0000667,0.00000582,11.46311547,1.34E-25,gain,yes,-0.0000164,0.00000988,-1.661416936,0.097640657,neg,ns,0.000935596,0.002895386,0.323133504,0.746811994,pos,ns,0.126788716,0.000124728,0.0000996,1.252644399,0.211279266,pos,ns,0.931167451,Ehbp1,Ehbp1_Exon,11,22053421,22053470,22053469,22053470,50,-,GGGCACCGTACCTGTGTCCATGAGATAGCGAAGGCGCTTCTCCACCAGCG,"Exon (Ehbp1-201/Ehbp1, exon 20 of 24)",11,22005828,22285838,280011,2,Ehbp1-201,232368,Ehbp1-201;Ehbp1-202;Ehbp1-207,Ehbp1;Ehbp1;Ehbp1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,45,216565,ENSMUSG00000042302,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12217,cg22078760,-0.0000257,0.0000116,-2.220808718,0.027086421,loss,ns,-0.0000326,0.0000196,-1.661323507,0.097659426,neg,ns,-0.010523199,0.005754101,-1.828817227,0.068387627,neg,ns,1.165022466,0.00000868,0.000197883,0.043889412,0.965020812,pos,ns,0.732506912,Iqch,Iqch_Intron,9,63501338,63501387,63501386,63501387,50,-,TCACTGGGAATAGAACTAATTACTACACGTCTGTATTTATTTGATCCACG,"Intron (Gm16759-201/Gm16759-201, intron 3 of 4)",9,63421455,63602493,181039,2,Iqch-201,101106,Iqch-201;Iqch-203;Iqch-204;Iqch-202;Iqch-206,Iqch;Iqch;Iqch;Iqch;Iqch,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,22,78250,ENSMUSG00000037801,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26359,cg23288914,-0.000000988,0.000001,-0.985898695,0.32495168,loss,ns,0.00000283,0.0000017,1.660999881,0.097724461,pos,ns,0.001511486,0.000498827,3.030079314,0.00265077,pos,ns,2.576627999,-0.0000465,0.0000172,-2.710875043,0.007084544,neg,ns,0.973564268,Xrn2,Xrn2_Exon,2,147026551,147026600,147026551,147026552,50,-,CGCTATTACATAGCTGATCGTTTAAATAATGACCCTGGGTGGAAAAATTT,"Exon (Xrn2-201/Xrn2, exon 6 of 30)",2,147012996,147078000,65005,1,Xrn2-201,13555,Xrn2-201;Xrn2-204,Xrn2;Xrn2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,24128,ENSMUSG00000027433,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16232,cg13683938,0.0000675,0.0000135,5.008241821,0.000000924,gain,yes,-0.000038,0.0000229,-1.660893567,0.097745834,neg,ns,0.035591562,0.006706814,5.306776194,0.000000213,pos,ns,6.671784087,-0.001013736,0.000230647,-4.395188734,0.0000152,neg,ns,0.232027553,Ctnnd1,Ctnnd1_fiveUTR,2,84622027,84622076,84622075,84622076,50,+,TTCAAATCTGAAAATTTCTGTCTTTCAAGGTCAGCATCGCCCACAAACCG,5' UTR,2,84600071,84650745,50675,2,Ctnnd1-204,28669,Ctnnd1-204;Ctnnd1-206;Ctnnd1-207;Ctnnd1-208;Ctnnd1-209;Ctnnd1-216;Ctnnd1-220;Ctnnd1-221;Ctnnd1-222;Ctnnd1-224;Ctnnd1-203;Ctnnd1-211;Ctnnd1-212;Ctnnd1-213;Ctnnd1-214;Ctnnd1-215;Ctnnd1-218;Ctnnd1-219;Ctnnd1-210;Ctnnd1-205;Ctnnd1-223;Ctnnd1-201;Ctnnd1-202;Ctnnd1-228;Ctnnd1-217;Ctnnd1-225;Ctnnd1-229;Gm28635-201,Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Gm28635,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,4,12388,ENSMUSG00000034101,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1923,cg26294928,-0.00000836,0.0000087,-0.960062869,0.337771776,loss,ns,0.0000246,0.0000148,1.660512638,0.097822443,pos,ns,0.004612249,0.004332037,1.06468377,0.287847629,pos,ns,0.540837343,-0.000107875,0.000148978,-0.724100668,0.469550027,neg,ns,0.292257344,Gm3148,Gm3148_Intergenic_downstream,6,16333645,16333694,16333645,16333646,50,-,CGTTTGTCAGAGTTTGAGAGTGTGAAAAATTGCTGCCTTAAATCATTTAA,Distal Intergenic,6,16237627,16238238,612,1,Gm3148-201,96067,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,6,100041116,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7812,cg23888549,0.000072,0.0000143,5.02778397,0.000000841,gain,yes,0.0000404,0.0000243,1.660162079,0.097892987,pos,ns,0.018849747,0.007131536,2.643153951,0.008631202,pos,ns,2.063928738,-0.000137858,0.000245253,-0.562103886,0.574451438,neg,ns,0.655993209,Gtdc1,Gtdc1_Intergenic_downstream,2,44409970,44410019,44409970,44409971,50,+,CGCCTCTGATTGCTTTGAACTGTCAAAAAATGGCAGAATCAAATTGAAAG,Distal Intergenic,2,44565133,44571347,6215,2,Gtdc1-207,161328,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,43,227835,ENSMUSG00000036890,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24152,cg25055254,-0.00000575,0.00000258,-2.224491129,0.026835231,loss,ns,0.00000729,0.00000439,1.659993136,0.097926998,pos,ns,0.00327664,0.001286469,2.547002463,0.011348278,pos,ns,1.945070033,-0.0000871,0.0000442,-1.969704888,0.049762227,neg,ns,0.945473093,Rbbp6,Rbbp6_Exon,7,122997684,122997733,122997684,122997685,50,+,CGCTCATTTTCCAGGTTAGTGTTTTGCAAGCCTTCACAACAGAATTACAA,"Exon (Rbbp6-201/Rbbp6, exon 16 of 18)",7,122970564,123002557,31994,1,Rbbp6-201,27120,Rbbp6-201;Rbbp6-210;Rbbp6-202;Rbbp6-208,Rbbp6;Rbbp6;Rbbp6;Rbbp6,0;0;0;-2546,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,5,19647,ENSMUSG00000030779,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6525,cg27081098,-0.0000124,0.00000592,-2.101261427,0.036425038,loss,ns,0.0000167,0.0000101,1.659645797,0.097996954,pos,ns,0.005054031,0.002947953,1.714420214,0.087451046,pos,ns,1.058234992,-0.000215044,0.00010138,-2.121165879,0.034701254,neg,ns,0.890137606,Strbp,Strbp_Exon,2,37625216,37625265,37625216,37625217,50,-,CGTCTCAAGGCCTCCCCAGCGCCCAAAGGTCTATTACAAGTACCTATAGA,"Exon (Strbp-207/Strbp, exon 7 of 19)",2,37483228,37647219,163992,2,Strbp-207,21954,Strbp-207;Strbp-201;Strbp-202,Strbp;Strbp;Strbp,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,7,20744,ENSMUSG00000026915,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8111,cg27571988,-0.0000278,0.00000981,-2.836655385,0.004859012,loss,ns,0.0000277,0.0000167,1.659561618,0.098013915,pos,ns,0.001990125,0.004881512,0.407686102,0.683785545,pos,ns,0.165080085,-0.000127606,0.000167875,-0.760125943,0.447757009,neg,ns,0.844246434,Sybu,Sybu_fiveUTR,15,44752199,44752248,44752247,44752248,50,+,TTGGGTGATCTGCACAGCAACAAGGAGCAGCTGACGTGCTTCACAACACG,Promoter (<=1kb),15,44671856,44752458,80603,2,Sybu-202,210,A930017M01Rik-205;A930017M01Rik-204;Sybu-206;Sybu-202;Sybu-207;Sybu-201;Sybu-204;Sybu-208;Sybu-203;Sybu-205,A930017M01Rik;A930017M01Rik;Sybu;Sybu;Sybu;Sybu;Sybu;Sybu;Sybu;Sybu,-32;-36;-4282;0;0;0;0;-3527;0;-4411,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,1,319613,ENSMUSG00000022340,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7675,cg16961679,-0.0000155,0.0000107,-1.453220663,0.147174019,loss,ns,0.0000301,0.0000181,1.659479436,0.098030475,pos,ns,0.024053598,0.00531398,4.526475326,0.00000856,pos,ns,5.067522723,-0.00065114,0.000182747,-3.563059295,0.000424229,neg,ns,0.600140723,Npr2,Npr2_Exon,4,43632251,43632300,43632251,43632252,50,-,CGGAACCTGACGCTGGCGGTGGTGCTGCCAGAACACAACCTGAGCTATGC,Promoter (<=1kb),4,43631935,43651244,19310,1,Npr2-201,316,Npr2-201;Npr2-202,Npr2;Npr2,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,10,230103,ENSMUSG00000028469,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
23652,cg14435862,-0.0000228,0.00000553,-4.131355312,0.0000464,loss,ns,0.0000156,0.00000939,1.659324132,0.098061775,pos,ns,-0.000650873,0.002752278,-0.236485053,0.813212486,neg,ns,0.089795962,0.0000307,0.0000947,0.324650167,0.745664819,pos,ns,0.790016344,Scn5a,Scn5a_Exon,9,119501741,119501790,119501789,119501790,50,+,ACTCAAGCAGAACCTTGATGGTCTTCCGCTCCTCTAGGTAGATGTCCTCG,"Exon (Scn5a-201/Scn5a, exon 20 of 27)",9,119483408,119562678,79271,2,Scn5a-201,60888,Scn5a-201;Scn5a-202;Scn5a-203,Scn5a;Scn5a;Scn5a,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,6,20271,ENSMUSG00000032511,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10037,cg23418942,-0.0000298,0.0000109,-2.731558251,0.006664732,loss,ns,-0.0000307,0.0000185,-1.659156881,0.098095493,neg,ns,-0.002538621,0.005422446,-0.468168992,0.639992735,neg,ns,0.193824956,-0.0000967,0.000186477,-0.518345575,0.604586945,neg,ns,0.649434734,Gm19197,Gm19197_Intron,17,52084900,52084949,52084900,52084901,50,+,CGAACTTCCCAGCAGTTATTAACACAAGTCCACATTTGCTGGAAGGATTG,"Intron (Gm19585-204/Gm19585-204, intron 2 of 2)",17,52008967,52009569,603,1,Gm19197-201,75933,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,11,100418416,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7401,cg06821075,0.000105973,0.000013,8.135945923,9.98E-15,gain,yes,-0.0000367,0.0000221,-1.658998528,0.098127425,neg,ns,0.026928576,0.006482797,4.153851134,0.0000423,pos,ns,4.373468897,-0.000726416,0.000222943,-3.258306964,0.001245201,neg,ns,0.390629404,R3hcc1l,R3hcc1l_Intron,19,42540713,42540762,42540713,42540714,50,+,CGGAGATGCTTCGGAAATGAGAGCCTTGGATGAATTCCTGGGCCTATTGA,"Intron (R3hcc1l-201/R3hcc1l, intron 1 of 6)",19,42518759,42592343,73585,1,R3hcc1l-201,21954,R3hcc1l-201;R3hcc1l-202;R3hcc1l-203,R3hcc1l;R3hcc1l;R3hcc1l,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,13,52013,ENSMUSG00000025184,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12351,cg09291757,0.00000231,0.00000316,0.7311422,0.46524457,gain,ns,0.0000089,0.00000536,1.658644678,0.098198809,pos,ns,-0.000743055,0.001571505,-0.472830339,0.636666958,neg,ns,0.196087689,-0.0000181,0.000054,-0.334918664,0.737912948,neg,ns,0.923138864,Tnc,Tnc_Exon,4,63984656,63984705,63984656,63984657,50,-,CGATGCCATCCAGGAAACTGTGAACCCGTAGGGATTAATGTCGGAAATGG,"Exon (Tnc-203/Tnc, exon 14 of 26)",4,63959785,64020725,60941,2,Tnc-201,36020,Tnc-201;Tnc-203;Tnc-204,Tnc;Tnc;Tnc,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,21923,ENSMUSG00000028364,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10345,cg07291847,-0.0000129,0.00000735,-1.749988623,0.081109665,loss,ns,-0.0000207,0.0000125,-1.658577413,0.098212384,neg,ns,-0.003286704,0.003655872,-0.899020496,0.369339514,neg,ns,0.432574227,-0.000000822,0.000125725,-0.006536182,0.994789122,neg,ns,0.89290139,Fmnl2,Fmnl2_Exon,2,53128755,53128804,53128755,53128756,50,-,CGTGGCTCTCGGTTTTTCTGCGAACCTGTTCTCACTGAGGAATACCATTA,"Exon (Fmnl2-205/Fmnl2, exon 26 of 27)",2,52857860,53132203,274344,1,Fmnl2-205,270895,Fmnl2-205;Fmnl2-201;Fmnl2-203;Fmnl2-204;Fmnl2-202,Fmnl2;Fmnl2;Fmnl2;Fmnl2;Fmnl2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,71409,ENSMUSG00000036053,conserved gene and region,2,53128739,53128776,38,*,38,6,0.657894737,1.480519481,0.157894737,0.00000546,CpGisland,TRUE,U11,Tr-P
5033,cg17625664,0.0000334,0.00000787,4.241454733,0.0000294,gain,ns,0.0000222,0.0000134,1.658391117,0.098249987,pos,ns,0.03085104,0.003917204,7.87578106,5.76E-14,pos,yes,13.23994312,-0.000367306,0.000134712,-2.726592371,0.006763422,neg,ns,0.895517502,Cpeb4,Cpeb4_Exon,11,31908805,31908854,31908853,31908854,50,+,CGGCCTTCTTTTACCTTCAGGTCGTCTAAACTATTCATATCCAGGATCCG,"Exon (Cpeb4-201/Cpeb4, exon 3 of 10)",11,31872211,31931577,59367,1,Cpeb4-201,36594,Cpeb4-201;Cpeb4-202;Cpeb4-203,Cpeb4;Cpeb4;Cpeb4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,10,67579,ENSMUSG00000020300,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26172,cg14361734,0.000139512,0.0000187,7.474625729,7.98E-13,gain,yes,-0.0000526,0.0000317,-1.658286371,0.098271135,neg,ns,0.010341507,0.009289628,1.113231578,0.266471435,pos,ns,0.57434934,-0.000854258,0.00031947,-2.673987854,0.007892851,neg,ns,0.241480844,Sox5,Sox5_Intron,6,144210789,144210838,144210789,144210790,50,-,CGCTCTCCACTCCTACTGGGAGGGTTCATTCTGCACAAAAGGCTACATTA,"Intron (Sox5-209/Sox5, intron 4 of 13)",6,143843739,144781977,938239,2,Sox5-209,571139,Sox5-201;Sox5-214;Sox5-205;Sox5-202;Sox5-209;Sox5-210;Sox5-212;Sox5-213,Sox5;Sox5;Sox5;Sox5;Sox5;Sox5;Sox5;Sox5,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,71,20678,ENSMUSG00000041540,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
4591,cg21942524,0.00000303,0.00000324,0.932916283,0.351589227,gain,ns,-0.00000914,0.00000551,-1.658220103,0.098284517,neg,ns,0.000832069,0.001614551,0.515356546,0.606671197,pos,ns,0.217046623,-0.0000419,0.0000555,-0.754677014,0.451015724,neg,ns,0.858097577,Odf2,Odf2_Exon,2,29893498,29893547,29893498,29893499,50,-,CGGGTGAAAACCAAGGTACCTTGGATGCCCCCTGGAAAATCATCTGCCCG,"Exon (Odf2-212/Odf2, exon 4 of 5)",2,29889221,29901107,11887,1,Odf2-212,4277,Odf2-212;Odf2-219;Odf2-211;Odf2-208;Odf2-205;Odf2-204;Odf2-225;Odf2-213;Odf2-217;Odf2-206;Odf2-203;Odf2-224;Odf2-218;Odf2-202;Odf2-201;Odf2-220;Odf2-207;Odf2-210;Odf2-209;Odf2-215,Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,8,18286,ENSMUSG00000026790,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
217,cg08402939,-0.0000105,0.00000654,-1.610853446,0.108229359,loss,ns,0.0000184,0.0000111,1.657804328,0.098368506,pos,ns,0.006129188,0.003253748,1.883731414,0.060537115,pos,ns,1.217978282,-0.000183195,0.000111896,-1.637187622,0.102605952,neg,ns,0.544295996,Gm21992,Gm21992_Exon,19,4787996,4788045,4787996,4787997,50,-,CGCAGTCCTAAGCCGGCTGGTGGACAACTGCACGTGCATTCGTTTGCCTT,"Exon (Rbm4-206/Rbm4, exon 3 of 4)",19,4742913,4811612,68700,2,Gm21992-203,23567,Gm21992-203;Gm21992-206;Gm21992-204;Gm21992-201;Gm21992-205;Gm21992-202;Rbm4-206;Rbm4-203;Rbm4-207;Rbm4-201;Rbm4-204;Rbm4-202;Rbm4-205,Gm21992;Gm21992;Gm21992;Gm21992;Gm21992;Gm21992;Rbm4;Rbm4;Rbm4;Rbm4;Rbm4;Rbm4;Rbm4,0;0;0;0;0;0;0;0;0;0;0;0;5838,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,27,48,102902673,ENSMUSG00000096370,mapped to different genes,19,4787858,4788058,201,*,201,17,0.577114428,1.040816327,0.084577114,4.91E-12,CpGisland,TRUE,U10,Tr-S
19017,cg05304630,0.00000113,0.00000879,0.128605438,0.897753257,gain,ns,0.0000247,0.0000149,1.657567517,0.098416369,pos,ns,0.013214234,0.004372472,3.022142801,0.002719195,pos,ns,2.565559612,-0.000405145,0.000150369,-2.694338464,0.007437193,neg,ns,0.195542214,Dach1,Dach1_Promoter,14,98172496,98172545,98172496,98172497,50,-,CGTTCTGTTTGTCCTTTGATAGGGCCTGTGCTGATTAAAATGCTACCAAG,Promoter (2-3kb),14,97825866,98169765,343900,2,Dach1-203,-2780,Dach1-201;Dach1-202;Dach1-203,Dach1;Dach1;Dach1,0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,8,76,13134,ENSMUSG00000055639,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
21558,cg17485177,-0.0000181,0.00000426,-4.258662799,0.0000273,loss,ns,0.000012,0.00000723,1.657504419,0.098429125,pos,ns,-0.000184314,0.002119456,-0.086963023,0.930757049,neg,ns,0.031163666,-0.000081,0.0000729,-1.111371421,0.267269708,neg,ns,0.931913217,Zfhx3,Zfhx3_Intron,8,108290905,108290954,108290905,108290906,50,-,CGCCACTTAGGGACCTGAACGAATTGACTAACTGGTTTCAGATCCAATAC,"Intron (Zfhx3-204/Zfhx3, intron 2 of 15)",8,107942644,108961630,1018987,1,Zfhx3-204,348261,Zfhx3-204;Zfhx3-207,Zfhx3;Zfhx3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,114,177,11906,ENSMUSG00000038872,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3016,cg15093444,-0.0000358,0.00000726,-4.933107967,0.00000132,loss,yes,0.0000205,0.0000123,1.657502766,0.098429459,pos,ns,0.00965802,0.003615544,2.671249327,0.007956049,pos,ns,2.099302548,-0.000524705,0.000124338,-4.219979223,0.0000321,neg,ns,0.83214032,Asxl3,Asxl3_fiveUTR,18,22392741,22392790,22392789,22392790,50,-,TATTAGAGCCTCAGCTGCTTTCGTGTTGGTCATGAGGTGATGCTGAACCG,5' UTR,18,22344246,22530015,185770,1,Asxl3-204,48495,Asxl3-204;Asxl3-202;Asxl3-201,Asxl3;Asxl3;Asxl3,0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,5,211961,ENSMUSG00000045215,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27401,cg15420817,-0.0000321,0.00000987,-3.252393095,0.00127052,loss,ns,0.0000278,0.0000168,1.657485439,0.098432963,pos,ns,-0.003720507,0.00491394,-0.757133176,0.449545157,neg,ns,0.347226677,0.0000979,0.00016899,0.579561904,0.562631026,pos,ns,0.875792574,Rpl7a-ps11,Rpl7a-ps11_Intergenic_upstream,X,166789272,166789321,166789272,166789273,50,-,CGGACTGGTAGTTCCTATTGGAATGAAAGGATCATAAATCCATTCATGCC,Distal Intergenic,20,166854211,166855011,801,1,Rpl7a-ps11-201,-64939,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,641660,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4687,cg24960230,-0.0000378,0.00000574,-6.578118898,2.03E-10,loss,yes,0.0000162,0.00000975,1.657425346,0.098445113,pos,ns,-0.007329053,0.00285641,-2.565826483,0.010762888,neg,ns,1.968071181,0.000278834,0.0000982,2.838537407,0.004831183,pos,ns,0.819686341,Mecom,Mecom_Intron,3,30106690,30106739,30106690,30106691,50,+,CGGGCTGCTCTAGTCAGGACTTATCGTCTATCATACTGATTGACGAAACC,"Intron (Mecom-212/Mecom, intron 1 of 15)",3,29951299,30509733,558435,2,Mecom-212,402994,Mecom-212;Mecom-203;Mecom-210;Mecom-213;Mecom-207;Mecom-208;Mecom-211,Mecom;Mecom;Mecom;Mecom;Mecom;Mecom;Mecom,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,80,14013,ENSMUSG00000027684,conserved gene and region,3,30106598,30106734,137,*,137,14,0.613138686,1.097254005,0.102189781,3.95E-11,CpGisland,TRUE,U9,En-Pp
24342,cg25499530,-0.0000105,0.0000215,-0.487277193,0.626406293,loss,ns,0.0000604,0.0000365,1.657313918,0.098467646,pos,ns,0.008561228,0.010679423,0.801656491,0.423365744,pos,ns,0.373284285,-0.000221536,0.000367264,-0.603205777,0.546812869,neg,ns,0.221722442,Fgf14,Fgf14_fiveUTR,14,124676678,124676727,124676726,124676727,50,-,TGAAATCAGTTCTCCTGAAGAGGGGCACCGGTTTTACCATAGGAAAAACG,Promoter (<=1kb),14,123977907,124677127,699221,2,Fgf14-202,400,Fgf14-202,Fgf14,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,9,14169,ENSMUSG00000025551,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
27701,cg14620758,-0.00000361,0.00000649,-0.556960096,0.57795657,loss,ns,-0.0000183,0.000011,-1.657176106,0.09849552,neg,ns,-0.01074374,0.003228036,-3.32825863,0.000979197,neg,ns,3.009129833,0.000182844,0.000111012,1.647070665,0.100556781,pos,ns,0.846470452,Zbtb18,Zbtb18_Exon,1,177447390,177447439,177447390,177447391,50,-,CGTGCTAGCAGCTGCCAGTTATCTCCACATGTATGACATTGTCAAAGTCT,"Exon (Zbtb18-211/Zbtb18, exon 3 of 3)",1,177442466,177447486,5021,1,Zbtb18-211,4924,Zbtb18-209;Zbtb18-211;Zbtb18-208;Zbtb18-203;Zbtb18-202;Zbtb18-204;Zbtb18-206;Zbtb18-210;Zbtb18-205;Zbtb18-212;Zbtb18-207;Zbtb18-201,Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,Exon,10,22,30928,ENSMUSG00000063659,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9520,cg04192711,-0.00000472,0.00000237,-1.989202052,0.047557516,loss,ns,0.00000668,0.00000403,1.657144231,0.098501968,pos,ns,0.001668451,0.001181767,1.411826442,0.159004025,pos,ns,0.798591881,-0.0000827,0.0000406,-2.035589294,0.042641735,neg,ns,0.951361066,Tenm3,Tenm3_Intergenic_upstream,8,49089764,49089813,49089812,49089813,50,+,CAGAAGTTTTAAGGGTTTTAAATCACAGATTTTCACAGCACTTCCTTCCG,Distal Intergenic,8,48646261,48843951,197691,2,Tenm3-207,-245813,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,39,23965,ENSMUSG00000031561,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13640,cg07588003,-0.00000494,0.00000211,-2.341356462,0.01984704,loss,ns,0.00000594,0.00000359,1.656985815,0.098534019,pos,ns,0.002631147,0.00105099,2.503494004,0.012811294,pos,ns,1.892407005,-0.000068,0.0000361,-1.882130721,0.060754844,neg,ns,0.936956762,Fn1,Fn1_Exon,1,71613936,71613985,71613936,71613937,50,-,CGGTACCCAATAATGGTGGAAGAGTTTAGCGGGGTCCACCTCAGGCCGAT,"Exon (Fn1-201/Fn1, exon 25 of 46)",1,71585520,71653172,67653,2,Fn1-214,39187,Fn1-214;Fn1-211;Fn1-213;Fn1-216;Fn1-217;Fn1-201;Fn1-203;Fn1-202;Fn1-215,Fn1;Fn1;Fn1;Fn1;Fn1;Fn1;Fn1;Fn1;Fn1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,14268,ENSMUSG00000026193,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8798,cg07497563,-0.00000212,0.00000194,-1.094683538,0.274505103,loss,ns,0.00000546,0.0000033,1.656840108,0.098563506,pos,ns,0.001819875,0.0009661,1.88373348,0.060536834,pos,ns,1.217980295,-0.0000575,0.0000332,-1.732070399,0.084255729,neg,ns,0.963823937,Oga,Oga_Intron,19,45762072,45762121,45762120,45762121,50,-,TTGGGACTAGAAAGCCTTCGGCAGACCAATCCTTCCAGCCATCTGATGCG,"Intron (Oga-201/Oga, intron 11 of 15)",19,45750259,45783551,33293,2,Oga-201,21430,Oga-201;Oga-204;Oga-203;Oga-206,Oga;Oga;Oga;Oga,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,21,76055,ENSMUSG00000025220,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1970,cg08996549,0.0000572,0.00000797,7.17053834,5.51E-12,gain,yes,-0.0000224,0.0000135,-1.656721776,0.098587459,neg,ns,0.013392612,0.003968342,3.374863274,0.000832435,pos,ns,3.079649816,-0.000460313,0.000136471,-3.37297224,0.000837967,neg,ns,0.213384063,Rarb,Rarb_Intron,14,16714443,16714492,16714491,16714492,50,+,CTATTACAGGTTCCATTCACATTATCGGATTGAACCATCCTGCATAACCG,"Intron (Rarb-203/Rarb, intron 1 of 3)",14,16509065,16819156,310092,2,Rarb-203,104664,Rarb-203;Rarb-204,Rarb;Rarb,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,16,218772,ENSMUSG00000017491,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18854,cg01700800,0.000000533,0.000000927,0.574858384,0.565804032,gain,ns,0.00000261,0.00000157,1.65661883,0.0986083,pos,ns,0.000851312,0.000461419,1.844989107,0.065992831,pos,ns,1.180503238,-0.0000208,0.0000159,-1.310558491,0.190977088,neg,ns,0.970189758,Ppip5k2,Ppip5k2_Exon,1,97717435,97717484,97717483,97717484,50,-,CACATACCATCTATGCAGCCAGAAGAGGTCAGCTTTTTACGATGAGTACG,"Exon (Ppip5k2-202/Ppip5k2, exon 27 of 31)",1,97706048,97770411,64364,2,Ppip5k2-201,52927,Ppip5k2-203;Ppip5k2-201;Ppip5k2-202;Ppip5k2-205;Ppip5k2-207;Ppip5k2-206,Ppip5k2;Ppip5k2;Ppip5k2;Ppip5k2;Ppip5k2;Ppip5k2,-2286;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,10,227399,ENSMUSG00000040648,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8915,cg11340380,-0.0000017,0.00000109,-1.562783385,0.119123792,loss,ns,0.00000307,0.00000185,1.656553374,0.098621554,pos,ns,0.00102899,0.000542407,1.897082476,0.05874627,pos,ns,1.231019704,-0.0000316,0.0000187,-1.692940364,0.091471451,neg,ns,0.033693946,Helt,Helt_Promoter,8,46295450,46295499,46295498,46295499,50,+,CACAAAGGGAGCAAGTAGCTGCCACAGGGAACTTTTGTACCCGCCCATCG,Promoter (<=1kb),8,46292039,46294671,2633,2,Helt-201,-779,Helt-201;Helt-202;Helt-203,Helt;Helt;Helt,0;-1461;-2115,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,15,22,234219,ENSMUSG00000047171,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
7354,cg14222444,-0.00000885,0.00000587,-1.507701826,0.132649254,loss,ns,0.0000165,0.00000998,1.656245998,0.098683811,pos,ns,0.003481129,0.002922421,1.191179994,0.234494157,pos,ns,0.629867974,0.000032,0.000100502,0.317905087,0.750770972,pos,ns,0.861691816,Pou4f3,Pou4f3_Intergenic_upstream,18,42383382,42383431,42383430,42383431,50,-,CTAAATTTTTTATCATAAATCAGGGCATGGAGCTAGGCGACAAGACGCCG,Distal Intergenic,18,42394539,42397249,2711,1,Pou4f3-201,-11157,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,17,18998,ENSMUSG00000024497,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9790,cg05998283,-0.000000515,0.00000147,-0.349443058,0.72699397,loss,ns,-0.00000415,0.0000025,-1.656237597,0.098685513,neg,ns,-0.000986132,0.000733821,-1.343832441,0.179985302,neg,ns,0.744762958,0.0000479,0.0000252,1.897239096,0.058725527,pos,ns,0.039517353,Trps1,Trps1_Promoter,15,50889136,50889185,50889184,50889185,50,-,GAAACTTCTTTTTTTGGCAAATGGGGATTTGTTTTTCCTCCTCCCCGGCG,Promoter (<=1kb),15,50654752,50889691,234940,2,Trps1-202,506,Trps1-202;Trps1-206;Trps1-204;Trps1-205;Trps1-201;Trps1-208,Trps1;Trps1;Trps1;Trps1;Trps1;Trps1,0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,9,36,83925,ENSMUSG00000038679,conserved gene but different region,15,50888954,50889185,232,*,232,13,0.625,0.575133486,0.056034483,0.000000371,CpGisland,TRUE,U1,Pr-A
9172,cg01262663,-0.000103555,0.0000187,-5.544399874,6.32E-08,loss,yes,0.0000525,0.0000317,1.656005759,0.098732492,pos,ns,0.045281238,0.009295928,4.871082883,0.00000177,pos,ns,5.75130526,-0.002175856,0.000319686,-6.806224176,5.19E-11,neg,yes,0.419612882,Cadm1,Cadm1_Intron,9,47367565,47367614,47367565,47367566,50,+,CGGGACGTCCCTGTCAACACAATGTTCTGCCTGGCCGGGCCTTCATATAT,"Intron (Gm31816-201/Gm31816-201, intron 1 of 5)",9,47530173,47853385,323213,1,Cadm1-204,-162559,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,77,54725,ENSMUSG00000032076,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16700,cg20825437,0.0000556,0.000013,4.284563997,0.0000245,gain,ns,-0.0000365,0.0000221,-1.655985536,0.098736591,neg,ns,0.016281406,0.006460811,2.520025033,0.012236746,pos,ns,1.912334061,-0.000205986,0.000222187,-0.927085189,0.354603519,neg,ns,0.084580071,Prkce,Prkce_Exon,17,86168865,86168914,86168865,86168866,50,+,CGACGACTTCGTGGCCAACTGCACCATCCAGTTTGAGGAGCTGCTGCAGA,"Exon (Prkce-202/Prkce, exon 1 of 15)",17,86167785,86657919,490135,1,Prkce-202,1080,Prkce-202;Prkce-204;Prkce-201,Prkce;Prkce;Prkce,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,7,18754,ENSMUSG00000045038,conserved gene and region,17,86168631,86168971,341,*,341,31,0.618768328,0.951485149,0.090909091,1.51E-22,CpGisland,TRUE,U3,Pr-B
27881,cg25295401,-0.00000323,0.0000015,-2.158928403,0.031622747,loss,ns,-0.00000421,0.00000254,-1.655853914,0.098763271,neg,ns,0.000305692,0.000745458,0.41007347,0.6820353,pos,ns,0.166193147,-0.0000636,0.0000256,-2.480651317,0.013644651,neg,ns,0.967488144,Prox1,Prox1_Intergenic_downstream,1,190092222,190092271,190092222,190092223,50,-,CGACAGATGGTATTTGATTATGAAGCAGACTGTTCATATAATACAAAGAT,Distal Intergenic,1,190122453,190169399,46947,2,Prox1-201,77177,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,59,19130,ENSMUSG00000010175,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24610,cg24261834,-0.00000123,0.0000121,-0.101971085,0.918845552,loss,ns,0.0000339,0.0000205,1.655756661,0.098782988,pos,ns,0.008590816,0.00600061,1.431657038,0.153249415,pos,ns,0.814601175,-0.00038074,0.00020636,-1.845022319,0.065987986,neg,ns,0.805042715,Dlgap3,Dlgap3_Exon,4,127195599,127195648,127195647,127195648,50,-,CTGGCATACCATGATGGTCAGCCAGGGCCGGGATGGATACCCGGGGGCCG,"Exon (Dlgap3-201/Dlgap3, exon 3 of 12)",4,127169204,127237022,67819,1,Dlgap3-201,26395,Dlgap3-201;Dlgap3-203;Dlgap3-202,Dlgap3;Dlgap3;Dlgap3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,7,242667,ENSMUSG00000042388,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4557,cg07904962,-0.00000166,0.00000156,-1.065565039,0.287449519,loss,ns,0.00000437,0.00000264,1.655661277,0.09880233,pos,ns,0.001536976,0.000774021,1.98570352,0.047946938,pos,ns,1.319239125,-0.000022,0.0000266,-0.827051111,0.408844246,neg,ns,0.964528146,Smo,Smo_Exon,6,29754764,29754813,29754812,29754813,50,+,TTCTTTGTGGGCAGCATTGGCTGGCTGGCCCAGTTCATGGATGGTGCCCG,"Exon (Smo-201/Smo, exon 4 of 12)",6,29735694,29761365,25672,1,Smo-201,19070,Gm13717-201;Smo-201,Gm13717;Smo,4003;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,319757,ENSMUSG00000001761,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27188,cg27180623,0.0000231,0.00000618,3.736512014,0.000222087,gain,ns,-0.0000174,0.0000105,-1.655504642,0.098834098,neg,ns,0.004273115,0.003077211,1.38863249,0.165941437,pos,ns,0.780045153,-0.000154011,0.000105825,-1.45533878,0.146587379,neg,ns,0.01982105,Mafb,Mafb_Exon,2,160365901,160365950,160365901,160365902,50,-,CGTTTATACCTGCAAGACTGGGCGTAGCCCCGGTTCTTCAGGGTCCGCCG,"Exon (Mafb-201/Mafb, exon 1 of 1)",2,160363703,160367065,3363,2,Mafb-201,1115,Mafb-201,Mafb,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,14,22,16658,ENSMUSG00000074622,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
18991,cg12847291,0.000000564,0.00000158,0.35800512,0.720583125,gain,ns,0.00000443,0.00000268,1.655363328,0.098862766,pos,ns,0.002816562,0.000784753,3.589107528,0.000385547,pos,ns,3.413923168,-0.0000666,0.000027,-2.468509791,0.014106904,neg,ns,0.964150598,Nfia,Nfia_threeUTR,4,98116840,98116889,98116888,98116889,50,+,GTATTATATTGCTCTTCTGAAGTAAGATTTTTCTACACCGGTAGCCTTCG,3' UTR,4,97777608,98118871,341264,1,Nfia-202,339232,Nfia-202;Nfia-203;Nfia-205;Nfia-201;Nfia-204,Nfia;Nfia;Nfia;Nfia;Nfia,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,8,44,18027,ENSMUSG00000028565,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19099,cg22954841,-0.000031,0.0000131,-2.358819788,0.018953366,loss,ns,0.000037,0.0000223,1.655328618,0.098869809,pos,ns,-0.008649505,0.006541693,-1.322211976,0.187072305,neg,ns,0.727990503,0.000452297,0.000224968,2.010490354,0.045245075,pos,ns,0.335700307,Ppp1r1b,Ppp1r1b_Promoter,11,98346452,98346501,98346452,98346453,50,+,CGTAGGATCCAGGAGAGAAAAATCAAAGTAATAAAACCTCATTTAATTCC,Promoter (1-2kb),11,98348404,98357796,9393,1,Ppp1r1b-201,-1903,Ppp1r1b-201;Ppp1r1b-204;Ppp1r1b-206;Ppp1r1b-202;Ppp1r1b-205;Ppp1r1b-203,Ppp1r1b;Ppp1r1b;Ppp1r1b;Ppp1r1b;Ppp1r1b;Ppp1r1b,-1903;-3495;-3495;-4354;-4714;-4988,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,16,16,19049,ENSMUSG00000061718,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
26937,cg12479331,-0.00000483,0.00000139,-3.473579488,0.000586656,loss,ns,0.00000391,0.00000236,1.655290898,0.098877462,pos,ns,-0.000608846,0.000691581,-0.880367315,0.379342341,neg,ns,0.420968681,-0.0000105,0.0000238,-0.441820266,0.658927315,neg,ns,0.961241664,Stx6,Stx6_Exon,1,155193221,155193270,155193269,155193270,50,+,GATCGTGGAACAGCAGGATGAGCAGTTGGAGCTGGTCTCTGGCAGCATCG,"Exon (Stx6-201/Stx6, exon 6 of 8)",1,155158715,155205659,46945,1,Stx6-201,34506,Stx6-201;Stx6-207;Stx6-209;Stx6-205;Stx6-203;Stx6-210;Stx6-204;Stx6-206;Stx6-208,Stx6;Stx6;Stx6;Stx6;Stx6;Stx6;Stx6;Stx6;Stx6,0;0;0;34450;8911;0;0;0;-1751,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,58244,ENSMUSG00000026470,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11356,cg17269514,-0.000000671,0.000000511,-1.31292382,0.19017969,loss,ns,-0.00000144,0.000000868,-1.655232184,0.098889377,neg,ns,-0.000170385,0.000254416,-0.669711508,0.503540229,neg,ns,0.297965827,-0.00000876,0.00000875,-1.000856543,0.317676757,neg,ns,0.989483269,Clk3,Clk3_Exon,9,57758741,57758790,57758741,57758742,50,+,CGAAACGCCATCCGACCAATCGCATGGTAGGCGGTTCCGATTGACAGATT,"Exon (Clk3-207/Clk3, exon 3 of 12)",9,57750624,57765103,14480,2,Clk3-207,6313,Clk3-207;Clk3-201;Clk3-205;Clk3-203;Clk3-206;Clk3-209;Clk3-208;Clk3-204,Clk3;Clk3;Clk3;Clk3;Clk3;Clk3;Clk3;Clk3,0;0;0;0;-3420;0;5518;6063,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,14,102414,ENSMUSG00000032316,conserved gene and region,9,57758611,57758779,169,*,169,14,0.615384615,0.908602151,0.082840237,7.36E-10,CpGisland,TRUE,U12,Tr-I
1638,cg02888146,-0.00000435,0.00000159,-2.733203324,0.006632326,loss,ns,0.00000447,0.0000027,1.655027675,0.098930885,pos,ns,0.001838486,0.000791549,2.322643294,0.020845502,pos,ns,1.680987646,-0.0000623,0.0000272,-2.288304898,0.02279251,neg,ns,0.055078799,Hivep2,Hivep2_Promoter,10,13965791,13965840,13965839,13965840,50,+,CTCCTAGTAACTTCTGTTCGGGGAGGCGCTGCCAGGAATAACCCGGTGCG,Promoter (<=1kb),10,13966075,14150589,184515,1,Hivep2-204,-235,Hivep2-204;Hivep2-201;Hivep2-205;Hivep2-203;Hivep2-202;Hivep2-206,Hivep2;Hivep2;Hivep2;Hivep2;Hivep2;Hivep2,0;0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,9,15273,ENSMUSG00000015501,conserved gene but different region,10,13965769,13965970,202,*,202,21,0.717821782,0.827868853,0.103960396,1.08E-16,CpGisland,TRUE,U1,Pr-A
12044,cg02343936,-0.00000843,0.00000729,-1.155845541,0.248634377,loss,ns,0.0000205,0.0000124,1.654885811,0.098959687,pos,ns,-0.001054628,0.003628011,-0.29069051,0.771482406,neg,ns,0.112673974,-0.000195815,0.000124767,-1.569447559,0.117563805,neg,ns,0.872476002,Fap,Fap_Intron,2,62526630,62526679,62526630,62526631,50,-,CGATGTGATGCTTCCCACACAGTATATTTTTTGCTAAATGGGAAATTACC,"Intron (Fap-202/Fap, intron 16 of 25)",2,62500943,62574075,73133,2,Fap-202,47396,Fap-202;Fap-205;Fap-201;Fap-208;Fap-209;Fap-206,Fap;Fap;Fap;Fap;Fap;Fap,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,8,14089,ENSMUSG00000000392,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27265,cg00359760,0.0000383,0.00000494,7.749354714,1.33E-13,gain,yes,-0.0000139,0.0000084,-1.654839325,0.098969127,neg,ns,0.002340432,0.002459873,0.951444023,0.342120234,pos,ns,0.46582124,0.000013,0.0000846,0.153745343,0.877910567,pos,ns,0.497748617,Vamp4,Vamp4_Exon,1,162589467,162589516,162589515,162589516,50,-,AGCTTATCGGATAATGCAACAGCTTTTAGCAACAGATCCAAACAACTTCG,"Exon (Vamp4-203/Vamp4, exon 6 of 8)",1,162570515,162599084,28570,1,Vamp4-203,18952,Vamp4-203;Vamp4-204;Vamp4-208;Vamp4-201;Vamp4-206;Vamp4-207;Vamp4-205,Vamp4;Vamp4;Vamp4;Vamp4;Vamp4;Vamp4;Vamp4,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,53330,ENSMUSG00000026696,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14889,cg24560242,-0.00000787,0.00000292,-2.700338746,0.007307446,loss,ns,-0.0000082,0.00000495,-1.654781518,0.098980866,neg,ns,-0.000702174,0.001451326,-0.483815529,0.628858377,neg,ns,0.20144715,-0.0000977,0.0000499,-1.956931319,0.051252852,neg,ns,0.947976678,Gm45288,Gm45288_Promoter,8,78099501,78099550,78099549,78099550,50,-,AACAGCACTTTCCTAAACTATTGTATTTATTAGCAACCTGTTGCCCTTCG,Promoter (8-9kb),8,78107960,78108110,151,1,Gm45288-201,-8459,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,7,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1848,cg00370355,-0.00000217,0.00000114,-1.905415784,0.057651049,loss,ns,0.00000321,0.00000194,1.65474341,0.098988605,pos,ns,0.000888091,0.000567667,1.564456444,0.118730629,pos,ns,0.925437232,-0.0000302,0.0000195,-1.549117965,0.122373624,neg,ns,0.967624389,Psat1,Psat1_Intergenic_downstream,19,15554071,15554120,15554119,15554120,50,+,ACTGCCTGATTATCCCACTTTATGGCAATTTGCATCGTTACGGGCCTGCG,Distal Intergenic,19,15905130,15909712,4583,2,Psat1-204,355592,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,14,17,107272,ENSMUSG00000024640,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16215,cg09408404,0.0000066,0.00000685,0.963042538,0.336276783,gain,ns,0.0000193,0.0000116,1.654532381,0.099031472,pos,ns,0.01197607,0.003409239,3.51282817,0.000509315,pos,ns,3.293013736,-0.000327467,0.000117243,-2.793053103,0.005545958,neg,ns,0.898137663,Cacna1a,Cacna1a_Intron,8,84597155,84597204,84597203,84597204,50,+,TGTCTTGTCTCTTTTCATGCCTGCTCTTAAAACTGTATATTGGCGCAACG,"Intron (Cacna1a-213/Cacna1a, intron 33 of 48)",8,84338639,84640246,301608,1,Cacna1a-213,258516,Cacna1a-213;Cacna1a-201;Cacna1a-202;Cacna1a-211;Cacna1a-212;Cacna1a-208;Cacna1a-207;Cacna1a-209;Cacna1a-210,Cacna1a;Cacna1a;Cacna1a;Cacna1a;Cacna1a;Cacna1a;Cacna1a;Cacna1a;Cacna1a,0;0;0;0;0;-4227;-4240;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,12,12286,ENSMUSG00000034656,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5399,cg25108269,-0.00000557,0.00000415,-1.343624803,0.180052397,loss,ns,0.0000117,0.00000704,1.654243224,0.099090233,pos,ns,0.004665082,0.002063281,2.261002535,0.024452072,pos,ns,1.61168434,-0.000165377,0.000071,-2.330694979,0.020410626,neg,ns,0.918303071,Mvb12b,Mvb12b_Intron,2,33788918,33788967,33788918,33788919,50,-,CGCTATTTTAACTTCAAATACTGAAGAACGCCTGATAAGGCTGAAAAGAA,"Intron (Mvb12b-201/Mvb12b, intron 7 of 9)",2,33729953,33887946,157994,2,Mvb12b-201,98979,Mvb12b-201;Mvb12b-205;Mvb12b-204,Mvb12b;Mvb12b;Mvb12b,0;-159;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,28,47,72543,ENSMUSG00000038740,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13907,cg03220494,-0.000000887,0.000000715,-1.240238868,0.215824959,loss,ns,-0.00000201,0.00000122,-1.653581135,0.099224886,neg,ns,0.0000284,0.000355989,0.079678296,0.936544533,pos,ns,0.028471567,-0.00000486,0.0000122,-0.396777287,0.691804709,neg,ns,0.978274544,Cir1,Cir1_Exon,2,73287578,73287627,73287626,73287627,50,-,ATTTTCAGCTTACTGATAAAAAGATCATTACCTGTGATGGATCATTTGCG,"Exon (Cir1-201/Cir1, exon 8 of 10)",2,73283105,73312701,29597,2,Cir1-201,25074,Cir1-201;Cir1-202;Sp9-202,Cir1;Cir1;Sp9,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,4,66935,ENSMUSG00000041777,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27724,cg11311195,0.0000123,0.00000412,2.994318091,0.002972097,gain,ns,-0.0000116,0.00000699,-1.653563209,0.099228533,neg,ns,0.007785855,0.002048941,3.799940633,0.000174204,pos,ns,3.75894211,-0.00000439,0.0000705,-0.062323899,0.950345061,neg,ns,0.083505063,Taf4,Taf4_Exon,2,179975408,179975457,179975456,179975457,50,-,CTCACCTGGGGGCAGCTGGAAGTTCTGGATGTTGGTCGGGTTCTGAGGCG,"Exon (Taf4-201/Taf4, exon 1 of 15)",2,179912152,179976646,64495,2,Taf4-201,1189,Taf4-201;Taf4-204,Taf4;Taf4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,228980,ENSMUSG00000039117,conserved gene and region,2,179975444,179977269,1826,*,1826,301,0.80558598,1.028030076,0.164841183,2.37E-303,CpGisland,TRUE,NA,NRS
9429,cg18409102,-0.0000371,0.00000627,-5.917355246,8.66E-09,loss,yes,0.0000176,0.0000106,1.653256318,0.099290999,pos,ns,0.011187819,0.003118347,3.587740584,0.000387491,pos,ns,3.41173806,-0.000272769,0.00010724,-2.543542967,0.0114589,neg,ns,0.068084181,Zbtb16,Zbtb16_Intron,9,48733957,48734006,48734005,48734006,50,+,TCTGCTCAGCTGGTTTTAAATGAAGTTATTATGAGTCATTAAAACACCCG,"Intron (Zbtb16-201/Zbtb16, intron 3 of 6)",9,48654297,48835945,181649,2,Zbtb16-201,101939,Zbtb16-201;Zbtb16-202,Zbtb16;Zbtb16,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,37,235320,ENSMUSG00000066687,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24530,cg18673500,-0.00000224,0.00000228,-0.984146729,0.325810841,loss,ns,0.00000641,0.00000387,1.653200808,0.099302301,pos,ns,0.003534256,0.001135171,3.113413857,0.002021908,pos,ns,2.69423858,-0.000116907,0.000039,-2.994656665,0.002968894,neg,ns,0.908008746,AU040320,AU040320_Exon,4,126842559,126842608,126842559,126842560,50,-,CGCCAGATTGGGGTCCTCCTGGGGGTGCTGGATTCCGACATCATTGTGCA,"Exon (AU040320-203/AU040320, exon 16 of 24)",4,126753555,126870070,116516,1,AU040320-203,89004,AU040320-203;AU040320-201;AU040320-202;AU040320-211,AU040320;AU040320;AU040320;AU040320,0;0;0;7280,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,100317,ENSMUSG00000028830,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19106,cg23565975,-0.0000007,0.000000757,-0.925272516,0.355543883,loss,ns,0.00000213,0.00000129,1.652963849,0.099350558,pos,ns,0.000985634,0.000376773,2.615987824,0.00933251,pos,ns,2.030001559,-0.0000279,0.000013,-2.152868547,0.032100316,neg,ns,0.976123921,Kcnk10,Kcnk10_Exon,12,98436233,98436282,98436233,98436234,50,+,CGATCATACTGAGGACAGCTGCAAAGTAGGCAAGGCCAACAAGGATCCAA,"Exon (Kcnk10-202/Kcnk10, exon 6 of 7)",12,98429437,98578310,148874,2,Kcnk10-202,142028,Kcnk10-202;Kcnk10-201,Kcnk10;Kcnk10,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,72258,ENSMUSG00000033854,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26151,cg02593178,0.00000598,0.00000264,2.266561519,0.024105886,gain,ns,-0.00000741,0.00000448,-1.652841398,0.099375503,neg,ns,-0.001984801,0.00131281,-1.511872309,0.131585064,neg,ns,0.880793403,0.0000435,0.0000451,0.962819916,0.336388331,pos,ns,0.041176033,Lmo4,Lmo4_Exon,3,144197376,144197425,144197424,144197425,50,+,CAGAATCGGTTTCAGTTTCCTTTCTTTGGGTCCTCAGTCCAAGAAGGTCG,"Exon (Gm43445-201/Gm43445-201, exon 1 of 1)",3,144188530,144202396,13867,2,Lmo4-203,4971,Lmo4-203;Lmo4-201;Lmo4-202;Lmo4-207;Lmo4-206;Lmo4-208;Lmo4-205;Lmo4-204,Lmo4;Lmo4;Lmo4;Lmo4;Lmo4;Lmo4;Lmo4;Lmo4,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,18,54,16911,ENSMUSG00000028266,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3881,cg23274273,-0.00000199,0.0000012,-1.658089974,0.098310797,loss,ns,0.00000338,0.00000204,1.652785304,0.099386932,pos,ns,0.000924021,0.000598284,1.544453179,0.123498779,pos,ns,0.908337335,-0.00000402,0.0000206,-0.195354656,0.845243292,neg,ns,0.961832233,Nsd3,Nsd3_threeUTR,8,25676804,25676853,25676852,25676853,50,-,TCCCAGAAACTCCAGACTTGTAGTCTCCATGCAAGATTTCTTTGTCGGCG,3' UTR,8,25601601,25677214,75614,1,Nsd3-211,75203,Nsd3-211;Nsd3-203;Nsd3-208;Nsd3-204;Nsd3-206;Nsd3-201;Nsd3-205,Nsd3;Nsd3;Nsd3;Nsd3;Nsd3;Nsd3;Nsd3,0;74520;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,14,234135,ENSMUSG00000054823,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4713,cg26890431,0.0000363,0.0000162,2.240571612,0.025761865,gain,ns,0.0000455,0.0000276,1.652661287,0.099412203,pos,ns,-0.002845483,0.008074596,-0.352399419,0.724778197,neg,ns,0.13979488,0.000393819,0.000277685,1.418225326,0.157129456,pos,ns,0.754130892,Mecom,Mecom_Intron,3,30221046,30221095,30221046,30221047,50,+,CGGCTCCATCAGTCTGTCAGTTCTGACATGTCATCTGAATTTTTTGAATC,"Intron (Mecom-212/Mecom, intron 1 of 15)",3,29951299,30509733,558435,2,Mecom-212,288638,Mecom-212;Mecom-210;Mecom-213;Mecom-207;Mecom-208;Mecom-211,Mecom;Mecom;Mecom;Mecom;Mecom;Mecom,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,80,14013,ENSMUSG00000027684,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
5860,cg21749099,-0.00000485,0.0000027,-1.793089661,0.073933311,loss,ns,0.00000759,0.00000459,1.652477108,0.099449743,pos,ns,0.002643513,0.001345563,1.964615063,0.050351752,pos,ns,1.297985409,-0.000105281,0.0000463,-2.275176335,0.023577835,neg,ns,0.946820347,Cnot4,Cnot4_Exon,6,35051151,35051200,35051199,35051200,50,-,TGGTTCAAGTGCATGATGCTATTGCGTGGAAAGGCCATCCAAGGATAGCG,"Exon (Cnot4-206/Cnot4, exon 10 of 11)",6,35022065,35133625,111561,2,Cnot4-206,82425,Cnot4-206;Cnot4-202;Cnot4-203;Cnot4-201;Cnot4-207;Cnot4-204;Cnot4-208,Cnot4;Cnot4;Cnot4;Cnot4;Cnot4;Cnot4;Cnot4,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,10,53621,ENSMUSG00000038784,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7440,cg04817397,0.0000183,0.00000332,5.521177208,7.13E-08,gain,yes,0.00000932,0.00000564,1.652357949,0.099474037,pos,ns,0.004752079,0.00165316,2.874542714,0.004325927,pos,ns,2.363920851,-0.0000292,0.0000569,-0.513902336,0.607686384,neg,ns,0.083403133,Ostm1,Ostm1_Intron,10,42632769,42632818,42632817,42632818,50,+,AGCTATGTACTGAAAAAATCAGCTCGCTTGTCATTCGAGTCAGACACCCG,"Intron (Ostm1-202/Ostm1, intron 2 of 5)",10,42583835,42698323,114489,1,Ostm1-202,48934,Ostm1-202;Ostm1-203,Ostm1;Ostm1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,21,22,14628,ENSMUSG00000038280,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
971,cg16526195,0.000106979,0.0000157,6.808960621,5.10E-11,gain,yes,-0.0000441,0.0000267,-1.652322336,0.099481298,neg,ns,0.027983078,0.007819768,3.578504891,0.000400874,pos,ns,3.396992045,-0.001050519,0.000268921,-3.906420421,0.000115028,neg,ns,0.253453954,Qk,Qk_threeUTR,17,10209517,10209566,10209517,10209518,50,-,CGACAGGCAAGCAAAGGCGATTACCAGTTAACTGATCAGCAGGCAGGCAT,3' UTR,17,10202601,10319380,116780,2,Qk-204,109814,Qk-204;Qk-202;Qk-203;Qk-201;Qk-206;Qk-205,Qk;Qk;Qk;Qk;Qk;Qk,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,12,17,19317,ENSMUSG00000062078,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20546,cg09603678,0.000000303,0.00000208,0.145800707,0.884173476,gain,ns,0.00000583,0.00000353,1.652229963,0.099500135,pos,ns,0.002333356,0.001033177,2.258428835,0.024613809,pos,ns,1.608821166,-0.000089,0.0000355,-2.505321591,0.012746616,neg,ns,0.946540199,Trim33,Trim33_threeUTR,3,103353862,103353911,103353862,103353863,50,+,CGCAGAAAACGCCTAAAGTCAGATGAGAGACCAGTACATATAAAGTAAAA,3' UTR,3,103279293,103358775,79483,1,Trim33-201,74569,Trim33-201;Trim33-202;Trim33-206;Trim33-204,Trim33;Trim33;Trim33;Trim33,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,5,94093,ENSMUSG00000033014,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11001,cg08062698,-0.000000369,0.000000919,-0.401905758,0.688030332,loss,ns,0.00000258,0.00000156,1.652121769,0.099522202,pos,ns,0.000494108,0.000457239,1.080634481,0.280699712,pos,ns,0.551758034,-0.00000613,0.0000157,-0.389761941,0.696980229,neg,ns,0.972049468,Senp7,Senp7_Exon,16,56175837,56175886,56175837,56175838,50,+,CGAAGTCACATTTTTAGTAGCTTTTTCTATAAATGCTTGACAAGAAAGGA,"Exon (Senp7-202/Senp7, exon 16 of 23)",16,56075409,56190011,114603,1,Senp7-202,100428,Senp7-202;Senp7-203;Senp7-204;Senp7-212,Senp7;Senp7;Senp7;Senp7,0;0;-4123;-4597,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,66315,ENSMUSG00000052917,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25003,cg15748883,-0.000101294,0.0000146,-6.961418203,2.02E-11,loss,yes,0.0000408,0.0000247,1.652075337,0.099531674,pos,ns,-0.021784947,0.0072421,-3.008098214,0.002844269,neg,ns,2.546029316,0.000606842,0.000249055,2.436576923,0.015389592,pos,ns,0.679975024,Fgfr2,Fgfr2_Intron,7,131497061,131497110,131497109,131497110,50,+,GTCTATCAATCTATTAAATTGGAAAGCCATTAGGAGGCCTGGTTTATGCG,"Intron (Fgfr2-217/Fgfr2, intron 2 of 6)",7,130162451,133123350,2960900,2,Fgfr2-217,1626240,Fgfr2-217;Gm45105-201,Fgfr2;Gm45105,0;-3158,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,58,79,14183,ENSMUSG00000030849,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9870,cg24463619,0.0000798,0.0000112,7.103158021,8.39E-12,gain,yes,-0.0000315,0.0000191,-1.651942028,0.09955887,neg,ns,0.02824229,0.005590726,5.051632211,0.000000749,pos,ns,6.125274663,-0.000763948,0.000192265,-3.973422446,0.0000882,neg,ns,0.347721452,Clk4,Clk4_Exon,11,51273087,51273136,51273087,51273088,50,+,CGAAGGAAAAGATCCAGGAGTATAGAGGATGATGAGGAGGGTCACCTGAT,"Exon (Clk4-205/Clk4, exon 5 of 6)",11,51261730,51273626,11897,1,Clk4-205,11357,Clk4-214;Clk4-205;Clk4-201;Clk4-204;Clk4-207;Clk4-212;Clk4-210;Clk4-203;Clk4-213;Clk4-202;Clk4-208;Clk4-211,Clk4;Clk4;Clk4;Clk4;Clk4;Clk4;Clk4;Clk4;Clk4;Clk4;Clk4;Clk4,11357;0;0;0;9923;0;9913;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,7,12750,ENSMUSG00000020385,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22354,cg15546160,-0.00000222,0.00000536,-0.41370074,0.67937934,loss,ns,0.000015,0.0000091,1.651825805,0.099582586,pos,ns,0.004109976,0.002665728,1.541783643,0.124146318,pos,ns,0.906066156,-0.000138657,0.0000917,-1.512496168,0.131426446,neg,ns,0.931249172,Btbd10,Btbd10_Exon,7,113351775,113351824,113351823,113351824,50,-,ACCTACCTTGAATGTTTATAAAGTTTACGAGGTCTACTATGCAATTTCCG,"Exon (Btbd10-201/Btbd10, exon 4 of 11)",7,113315626,113369339,53714,2,Btbd10-201,17515,Btbd10-202;Btbd10-201;Btbd10-203;Btbd10-205,Btbd10;Btbd10;Btbd10;Btbd10,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,6,68815,ENSMUSG00000038187,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
504,cg24853070,-0.00000376,0.00000342,-1.098633458,0.272780503,loss,ns,0.00000959,0.00000581,1.651689494,0.099610407,pos,ns,-0.001102817,0.001701506,-0.648141744,0.517373044,neg,ns,0.286196202,0.0000745,0.0000585,1.272833008,0.204031055,pos,ns,0.949003582,Celf2,Celf2_Exon,2,6624671,6624720,6624671,6624672,50,-,CGTTGGACTTTTCACTATCTGCAGGTTTCATCTGAATGGGATGATGCATC,"Exon (Celf2-201/Celf2, exon 6 of 16)",2,6539694,7396000,856307,2,Celf2-201,771280,Celf2-201;Celf2-202;Celf2-204;Celf2-214;Celf2-206;Celf2-226;Celf2-223;Celf2-224;Celf2-221;Celf2-205;Celf2-211;Celf2-213;Celf2-225;Celf2-228;Celf2-217;Celf2-227;Celf2-210;Celf2-209;Celf2-219;Celf2-208;Celf2-207,Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,24,14007,ENSMUSG00000002107,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8531,cg11548411,0.0000679,0.00000675,10.06038795,8.65E-21,gain,yes,-0.0000189,0.0000115,-1.651612766,0.099626069,neg,ns,0.001453319,0.003361158,0.432386416,0.665761213,pos,ns,0.17668151,0.000167463,0.00011559,1.448771606,0.148412115,pos,ns,0.166633387,Btrc,Btrc_Intron,19,45302394,45302443,45302394,45302395,50,-,CGAAATGACTGCGCGGAAAATAGCATCACTGACATTTATATTAGAGGATA,"Intron (Gm28578-211/Gm28578-211, intron 1 of 1)",19,45363734,45507736,144003,1,Btrc-204,-61340,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,63,98,12234,ENSMUSG00000025217,mapped to different genes,19,45301752,45302408,657,*,657,54,0.611872146,0.882427559,0.082191781,2.09E-36,CpGisland,TRUE,U3,Pr-B
15200,cg14547563,-0.00000239,0.0000032,-0.746576766,0.455884893,loss,ns,0.00000899,0.00000544,1.651107659,0.099729227,pos,ns,0.003610232,0.001595082,2.263351573,0.024305261,pos,ns,1.614299714,-0.000107554,0.0000549,-1.960702451,0.050808917,neg,ns,0.92375841,Nf1,Nf1_Exon,11,79565911,79565960,79565959,79565960,50,-,TCTTGGCAGGCTACACTGGTAAAATATACCACAGATGAGTTTGATCAACG,"Exon (Nf1-202/Nf1, exon 53 of 57)",11,79339792,79578942,239151,1,Nf1-202,226119,Nf1-202;Nf1-201;Nf1-208;Nf1-206,Nf1;Nf1;Nf1;Nf1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,6,18015,ENSMUSG00000020716,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22414,cg11998644,0.000000229,0.00000715,0.031972052,0.974514914,gain,ns,-0.0000201,0.0000121,-1.650988068,0.099753664,neg,ns,-0.002630926,0.003558881,-0.739256515,0.46031064,neg,ns,0.336948987,0.0000531,0.00012239,0.433816605,0.664723368,pos,ns,0.900618118,Dph6,Dph6_Intergenic_downstream,2,114441185,114441234,114441185,114441186,50,-,CGATTTAGTGTGACAGATCGAGTCCTTCCAATGTCCTCAGTGGTACATGC,Distal Intergenic,2,114518145,114545891,27747,2,Dph6-204,104706,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,10,66632,ENSMUSG00000057147,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9022,cg18308438,0.000000419,0.00000173,0.241674106,0.80919248,gain,ns,-0.00000486,0.00000294,-1.650658566,0.099821017,neg,ns,-0.000117772,0.000862334,-0.136573181,0.891456827,neg,ns,0.049899685,0.00000921,0.0000297,0.310456883,0.756422166,pos,ns,0.074649572,Srf,Srf_Exon,17,46555323,46555372,46555371,46555372,50,-,GGTACCTTCTTCATGATGCCCGTCTTCCTCTTGCTGAAGGTCGTGTAGCG,Promoter (<=1kb),17,46548329,46556175,7847,2,Srf-201,803,Srf-201;Srf-202;Srf-204,Srf;Srf;Srf,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,11,20807,ENSMUSG00000015605,conserved gene and region,17,46555216,46556165,950,*,950,125,0.753684211,0.946516818,0.131578947,2.27E-111,CpGisland,TRUE,NA,NRS
11375,cg11232458,-0.0000231,0.00000693,-3.330652859,0.000971106,loss,ns,0.0000194,0.0000118,1.650610567,0.099830832,pos,ns,0.002141894,0.00345077,0.620700337,0.535252876,pos,ns,0.271440991,-0.000322113,0.000118672,-2.714323092,0.007012941,neg,ns,0.60163129,Galnt5,Galnt5_Intergenic_upstream,2,57856755,57856804,57856803,57856804,50,+,CCTCAGCTGCAGGACTTGAAGACTTAATCATTTGACATACAAGCAGCCCG,Distal Intergenic,2,57997884,58039878,41995,1,Galnt5-201,-141080,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,8,241391,ENSMUSG00000026828,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8707,cg26845448,0.000253323,0.0000195,12.95871555,5.50E-31,gain,yes,-0.0000548,0.0000332,-1.650592054,0.099834617,neg,ns,0.016351686,0.009729481,1.680632885,0.093841516,pos,ns,1.027604986,-0.000418149,0.000334596,-1.249714091,0.212346677,neg,ns,0.148324896,Gm31907,Gm31907_fiveUTR,18,45560126,45560175,45560174,45560175,50,-,CGAGAGCAACCCCTTCACCGAAATAGCCATGAGCAGCTGCAGGTACAACG,Promoter (<=1kb),18,45501590,45560130,58541,2,Gm31907-202,0,Gm31907-202;Kcnn2-205;Kcnn2-201;Kcnn2-207;Kcnn2-206;Kcnn2-202;Kcnn2-208;Kcnn2-203,Gm31907;Kcnn2;Kcnn2;Kcnn2;Kcnn2;Kcnn2;Kcnn2;Kcnn2,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,15,15,102634286,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
16864,cg20199697,-0.00000969,0.00000232,-4.170282623,0.0000395,loss,ns,-0.00000652,0.00000395,-1.650482372,0.099857048,neg,ns,-0.000859647,0.001157057,-0.742959486,0.45806885,neg,ns,0.339069241,-0.0000603,0.0000398,-1.516160114,0.130497883,neg,ns,0.961888745,Ythdc1,Ythdc1_threeUTR,5,86828189,86828238,86828189,86828190,50,-,CGTCAAAAGTTTGTCCTGCGGTAAAGAAGAAAGAGAAAATCCTCAAATCA,3' UTR,5,86804221,86836654,32434,1,Ythdc1-202,23968,Ythdc1-202;Ythdc1-203;Ythdc1-208;Ythdc1-201;Ythdc1-207;Ythdc1-206;Ythdc1-205;Ythdc1-204,Ythdc1;Ythdc1;Ythdc1;Ythdc1;Ythdc1;Ythdc1;Ythdc1;Ythdc1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,12,17,231386,ENSMUSG00000035851,conserved gene but different region,5,86828042,86828208,167,*,167,10,0.479041916,1.076724694,0.05988024,0.00000716,CpGisland,TRUE,U10,Tr-S
50,cg01584043,-0.00000362,0.00000182,-1.987028787,0.047799106,loss,ns,-0.00000511,0.0000031,-1.650452767,0.099863103,neg,ns,-0.00077057,0.000906871,-0.849701903,0.396146574,neg,ns,0.402144096,-0.00000594,0.0000312,-0.190522145,0.849024697,neg,ns,0.952671077,Cnot3,Cnot3_threeUTR,7,3653179,3653228,3653227,3653228,50,+,TGGCCCTGGGCTCGCCAGCAGAAGCAGGACCGGATTGAGGGCTTGAAGCG,3' UTR,7,3645290,3661108,15819,1,Cnot3-205,7889,Cnot3-208;Cnot3-205;Cnot3-207;Cnot3-201;Cnot3-203;Cnot3-204;Cnot3-202,Cnot3;Cnot3;Cnot3;Cnot3;Cnot3;Cnot3;Cnot3,7911;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,4,232791,ENSMUSG00000035632,conserved gene but different region,7,3653191,3653420,230,*,230,14,0.534782609,0.851401375,0.060869565,4.11E-08,CpGisland,TRUE,U10,Tr-S
24186,cg22827537,0.0000638,0.0000181,3.529828861,0.000478872,gain,ns,-0.0000507,0.0000307,-1.65039871,0.09987416,neg,ns,0.017938033,0.008994814,1.99426383,0.04699882,pos,ns,1.327913045,-0.000778012,0.000309331,-2.515143988,0.012403956,neg,ns,0.250711743,Tnrc6a,Tnrc6a_Exon,7,123187412,123187461,123187460,123187461,50,-,TACGTCACTCCTGGCAGTGTCATAAACAATCTTTCAATTAATACTGTGCG,"Exon (Tnrc6a-201/Tnrc6a, exon 19 of 24)",7,123124177,123193987,69811,1,Tnrc6a-203,63235,Tnrc6a-203;Tnrc6a-201;Tnrc6a-205;Tnrc6a-208,Tnrc6a;Tnrc6a;Tnrc6a;Tnrc6a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,17,24,233833,ENSMUSG00000052707,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21010,cg04539386,0.000000887,0.00000192,0.461708724,0.644614039,gain,ns,0.00000538,0.00000326,1.650379426,0.099878105,pos,ns,0.001969223,0.000955912,2.06004679,0.040228483,pos,ns,1.395466339,-0.0000866,0.0000329,-2.633062036,0.008886006,neg,ns,0.951919559,Dcaf7,Dcaf7_Exon,11,106054683,106054732,106054683,106054684,50,+,CGGATGACCACCAGGCTCTCATCTGGGACATCCAGCAAATGCCCCGAGCC,"Exon (Dcaf7-201/Dcaf7, exon 7 of 7)",11,106036872,106059324,22453,1,Dcaf7-201,17811,Dcaf7-201,Dcaf7,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,71833,ENSMUSG00000049354,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4646,cg02175911,-0.00000742,0.00000277,-2.677331864,0.007816294,loss,ns,-0.00000777,0.00000471,-1.650290456,0.099896305,neg,ns,-0.001237678,0.001379996,-0.896871074,0.370483676,neg,ns,0.431230923,-0.000128523,0.0000475,-2.708143449,0.007141736,neg,ns,0.936376141,Sptan1,Sptan1_Exon,2,30028666,30028715,30028666,30028667,50,-,CGTGTCTATCAGTATGAAGTTGGGGATGATCTGTCTGGAAGGTTTTTCTC,"Exon (Sptan1-205/Sptan1, exon 51 of 57)",2,29965560,30031448,65889,1,Sptan1-205,63106,Sptan1-205;Sptan1-204;Sptan1-203;Sptan1-202;Sptan1-201;Sptan1-208;Sptan1-212;Sptan1-207;Sptan1-213;Sptan1-214;Wdr34-201;Wdr34-202,Sptan1;Sptan1;Sptan1;Sptan1;Sptan1;Sptan1;Sptan1;Sptan1;Sptan1;Sptan1;Wdr34;Wdr34,0;0;0;0;0;0;6845;0;0;-1594;20166;3790,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,7,20740,ENSMUSG00000057738,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3155,cg25485747,-0.0000015,0.00000181,-0.831901087,0.406105135,loss,ns,0.00000506,0.00000307,1.650207531,0.099913272,pos,ns,0.001128362,0.000898931,1.255226402,0.210341966,pos,ns,0.677074072,-0.00000911,0.0000309,-0.29455997,0.768527196,neg,ns,0.95178746,Lrmda,Lrmda_Intron,14,23015890,23015939,23015938,23015939,50,+,GTGAGCCCCGCATTCAACTTTCCTTTGAGGTTGGTGAAAGACGGCTGACG,"Intron (Lrmda-201/Lrmda, intron 6 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,996178,Lrmda-201;Lrmda-206,Lrmda;Lrmda,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3134,cg02321338,-0.000000244,0.00000293,-0.083283194,0.933680116,loss,ns,0.00000822,0.00000498,1.650042185,0.099947109,pos,ns,0.002451133,0.00145934,1.679616879,0.09403936,pos,ns,1.026690333,-0.0000995,0.0000502,-1.982136158,0.048346791,neg,ns,0.937508913,Lrmda,Lrmda_Intron,14,22930623,22930672,22930623,22930624,50,-,CGAATAATGTGTACTGAGCTTTCTATCATGTACCATTATAATTAGCTCTG,"Intron (Lrmda-201/Lrmda, intron 6 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,910911,Lrmda-201;Lrmda-206,Lrmda;Lrmda,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16560,cg07661299,0.000017,0.00000233,7.302106866,2.40E-12,gain,yes,-0.00000653,0.00000396,-1.650020855,0.099951475,neg,ns,-0.00092926,0.001159023,-0.801761723,0.42330495,neg,ns,0.373346653,-0.00000215,0.0000399,-0.053932704,0.95702352,neg,ns,0.046251052,Camkmt,Camkmt_Intron,17,85454843,85454892,85454843,85454844,50,+,CGTCTTAATCTTGTTACACAAATGGTCGTGAAGAGATTCATGAATTTTAA,"Intron (Camkmt-201/Camkmt, intron 10 of 10)",17,85090552,85458588,368037,1,Camkmt-201,364291,Camkmt-201,Camkmt,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,41,44,73582,ENSMUSG00000071037,conserved gene and region,17,85454695,85454844,150,*,150,11,0.6,0.818452381,0.073333333,0.000000279,CpGisland,TRUE,U13,Hc-P
1922,cg12131676,-0.0000017,0.00000151,-1.125960071,0.261053333,loss,ns,0.00000424,0.00000257,1.650014869,0.0999527,pos,ns,0.001788845,0.000751951,2.378938092,0.017967824,pos,ns,1.745504524,-0.0000575,0.0000259,-2.223941134,0.026872619,neg,ns,0.963499991,Gm3148,Gm3148_Intergenic_downstream,6,16333355,16333404,16333355,16333356,50,+,CGATTGATCATTTTGAACACCCAAAGAAGATGAATGACAGTGAGCAACGT,Distal Intergenic,6,16237627,16238238,612,1,Gm3148-201,95728,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,6,100041116,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21949,cg00765068,0.00000354,0.00000243,1.454459508,0.146830686,gain,ns,-0.00000682,0.00000413,-1.649809752,0.099994691,neg,ns,0.002239549,0.001210273,1.850449985,0.065200015,pos,ns,1.185752303,-0.00010238,0.0000416,-2.459799843,0.014447012,neg,ns,0.952804529,Ap1g1,Ap1g1_Exon,8,109803091,109803140,109803091,109803092,50,-,CGGAATGTGGCAAAATTACTGTATATGCACATGCTGGGCTACCCTGCTCA,"Exon (Ap1g1-202/Ap1g1, exon 2 of 24)",8,109778554,109864204,85651,1,Ap1g1-202,24537,Ap1g1-202;Ap1g1-204;Ap1g1-201,Ap1g1;Ap1g1;Ap1g1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,11,16,11765,ENSMUSG00000031731,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14379,cg04281884,0.000000352,0.0000193,0.018217892,0.985476749,gain,ns,0.0000542,0.0000328,1.649518449,0.100054349,pos,ns,0.061173981,0.009621028,6.358362185,7.29E-10,pos,ns,9.137125051,-0.0004561,0.000330866,-1.378502693,0.169042121,neg,ns,0.683257676,Smad7,Smad7_Exon,18,75394312,75394361,75394360,75394361,50,-,CAGTTCATCAGCAGCTGCCCGTGCTGGCTAGAGGTCATCTTCAACAGCCG,"Exon (Smad7-201/Smad7, exon 4 of 4)",18,75367529,75395935,28407,1,Smad7-201,26783,Smad7-201;Smad7-202;Smad7-205;Smad7-204;Smad7-203,Smad7;Smad7;Smad7;Smad7;Smad7,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,19,17131,ENSMUSG00000025880,conserved gene and region,18,75394309,75394451,143,*,143,10,0.608391608,0.760638298,0.06993007,0.00000182,CpGisland,TRUE,U10,Tr-S
11819,cg16842643,0.00000963,0.00000477,2.018231483,0.044428149,gain,ns,-0.0000134,0.00000811,-1.649365887,0.100085605,neg,ns,0.007509468,0.002375698,3.160952754,0.001727958,pos,ns,2.76246678,-0.000367011,0.0000817,-4.492171077,0.00000996,neg,ns,0.067804337,Clcn3,Clcn3_fiveUTR,8,60954753,60954802,60954753,60954754,50,-,CGACTCGCTGAAGCAACTGGGTTCTTCCACAGTGGATGATGTCATCAAAG,Promoter (<=1kb),8,60928295,60954779,26485,2,Clcn3-207,0,Clcn3-202;Clcn3-203;Clcn3-205;Clcn3-206;Clcn3-201;Clcn3-204;Clcn3-207;Clcn3-210;Clcn3-208,Clcn3;Clcn3;Clcn3;Clcn3;Clcn3;Clcn3;Clcn3;Clcn3;Clcn3,0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,2,12725,ENSMUSG00000004319,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
18770,cg08882563,-0.00000567,0.00000544,-1.041223506,0.298583185,loss,ns,0.0000153,0.00000925,1.649251179,0.100109111,pos,ns,0.009943808,0.002709504,3.669973318,0.000285509,pos,ns,3.544380764,-0.000338658,0.0000932,-3.634463053,0.000325983,neg,ns,0.897438359,Bcl9,Bcl9_Intron,3,97265823,97265872,97265823,97265824,50,-,CGCTTTAATTACAATATTGTAACACCAATTAGAGATCTATCTAATCGAGG,"Intron (Bcl9-208/Bcl9, intron 1 of 3)",3,97216553,97297917,81365,2,Bcl9-208,32045,Bcl9-208,Bcl9,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,10,77578,ENSMUSG00000038256,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9355,cg14632261,-0.00000576,0.00000244,-2.362124662,0.018788279,loss,ns,0.00000683,0.00000414,1.649122384,0.100135509,pos,ns,0.002743499,0.001213339,2.261115493,0.024444994,pos,ns,1.611810059,-0.000132063,0.0000417,-3.164962309,0.001705065,neg,ns,0.943798261,Tenm3,Tenm3_Intron,8,48337221,48337270,48337221,48337222,50,+,CGTCAATCTTTGTAATGAACTTATTAATTAGAGTTAATTTAATTGAAGTG,"Intron (Tenm3-201/Tenm3, intron 10 of 28)",8,48227682,48674690,447009,2,Tenm3-201,337420,Tenm3-201;Tenm3-206;Tenm3-204,Tenm3;Tenm3;Tenm3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,39,23965,ENSMUSG00000031561,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15333,cg23864135,0.00000653,0.00000434,1.50458112,0.133449941,gain,ns,-0.0000122,0.00000737,-1.649121605,0.100135669,neg,ns,-0.00382822,0.002159181,-1.772996159,0.077211229,neg,ns,1.112319536,0.0000371,0.0000743,0.499503848,0.617778799,pos,ns,0.946966798,Cacna1i,Cacna1i_Exon,15,80389060,80389109,80389108,80389109,50,+,ACTGCACCCACGACGAGCGCAGCTGCCTGAGCAGCCTGCAGTTTGTGTCG,"Exon (Cacna1i-202/Cacna1i, exon 32 of 37)",15,80287238,80398279,111042,1,Cacna1i-202,101822,Cacna1i-202;Cacna1i-205;Cacna1i-203;Cacna1i-204;Cacna1i-206;Cacna1i-201,Cacna1i;Cacna1i;Cacna1i;Cacna1i;Cacna1i;Cacna1i,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,11,239556,ENSMUSG00000022416,conserved gene and region,15,80389020,80389173,154,*,154,10,0.590909091,0.74829932,0.064935065,0.00000352,CpGisland,TRUE,U15,NS
6999,cg24243964,-0.00000509,0.0000173,-0.294910718,0.768259487,loss,ns,0.0000484,0.0000293,1.649038528,0.100152699,pos,ns,0.005465369,0.008593599,0.63598133,0.525257834,pos,ns,0.279627462,0.000326221,0.000295533,1.103839288,0.270518951,pos,ns,0.821040901,Gm8352,Gm8352_Intergenic_downstream,13,40504405,40504454,40504405,40504406,50,+,CGCTGGGGTGATTTCTAGCATACTTTATCATGTATCAATATATACTCTGT,Distal Intergenic,13,40496188,40497473,1286,1,Gm8352-201,8217,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,666894,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23717,cg00973544,0.00000232,0.00000133,1.741200297,0.082640527,gain,ns,-0.00000373,0.00000226,-1.649024803,0.100155513,neg,ns,-0.00185316,0.000663201,-2.794266331,0.00552571,neg,ns,2.257611904,0.0000352,0.0000228,1.542706393,0.12392219,pos,ns,0.967214355,Hivep3,Hivep3_Exon,4,120123002,120123051,120123002,120123003,50,-,CGGCCCTATGTGTGCAAGCACTGTCACTTTGCTTTTAAAACCAAAGGTAA,"Exon (Hivep3-202/Hivep3, exon 6 of 9)",4,119814495,120138045,323551,1,Hivep3-202,308507,Hivep3-202;Hivep3-209,Hivep3;Hivep3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,8,16656,ENSMUSG00000028634,conserved gene and region,4,120122884,120123003,120,*,120,9,0.533333333,1.071428571,0.075,0.0000042,CpGisland,TRUE,NA,NRS
17891,cg09505779,0.0000034,0.00000538,0.631536673,0.528155083,gain,ns,-0.0000151,0.00000914,-1.649003439,0.100159893,neg,ns,0.00282045,0.002678744,1.052899852,0.293206884,pos,ns,0.532825838,-0.000159971,0.0000921,-1.736512295,0.083466719,neg,ns,0.071386791,Irx5,Irx5_Intron,8,92361814,92361863,92361862,92361863,50,+,TGCAAAGCAATCAGCTGGTGAACTTTGCTAATGAGTTCGATTTTATGCCG,"Intron (Irx5-202/Irx5, intron 3 of 4)",8,92357625,92376286,18662,1,Irx5-202,4189,Irx5-202;Irx5-201,Irx5;Irx5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,30,54352,ENSMUSG00000031737,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
5615,cg13671198,-0.00000342,0.00000317,-1.079362039,0.28126544,loss,ns,0.00000888,0.00000538,1.648974023,0.100165924,pos,ns,0.003004752,0.001577322,1.904970604,0.057709124,pos,ns,1.238755521,-0.0000912,0.0000542,-1.681992796,0.093577229,neg,ns,0.944155459,Pbx3,Pbx3_Intron,2,34357064,34357113,34357064,34357065,50,-,CGAATAATGGCAGGGGGACTTAATTTCTGGAATGCAAATATAGCAAAGAA,"Intron (Pbx3-202/Pbx3, intron 2 of 7)",2,34171457,34372038,200582,2,Pbx3-202,14925,Pbx3-202;Pbx3-201;Pbx3-206;Pbx3-207;Pbx3-209;Pbx3-204;Pbx3-205;Pbx3-203,Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,82,18516,ENSMUSG00000038718,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9697,cg19848164,0.00000676,0.00000824,0.820130779,0.412771701,gain,ns,0.0000231,0.000014,1.648756169,0.100210599,pos,ns,0.013757199,0.004101439,3.354237392,0.000894659,pos,ns,3.048342652,-0.000185284,0.000141048,-1.313621725,0.189944884,neg,ns,0.440780589,Gm7481,Gm7481_Intergenic_upstream,12,50120177,50120226,50120177,50120178,50,+,CGTGATTCTAAGCGAATTAGGTGAGGCAGGAACAGGAAGAATCTGAGTAG,Distal Intergenic,12,49840757,49841751,995,2,Gm7481-201,-278426,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,27,37,665077,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9718,cg14522338,-0.0000295,0.00000767,-3.842884502,0.000147517,loss,ns,0.0000215,0.000013,1.648353464,0.100293222,pos,ns,0.008589578,0.003815153,2.251437582,0.025057867,pos,ns,1.601055901,-0.000566229,0.000131203,-4.315679564,0.0000214,neg,ns,0.845599604,Prkd1,Prkd1_Intergenic_downstream,12,50260831,50260880,50260879,50260880,50,-,AAGTTATTTTCCCCAACCATCTCTATTTTTGGTAGATGATTAGTGCCCCG,Distal Intergenic,12,50341231,50649098,307868,2,Prkd1-201,388267,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,8,18760,ENSMUSG00000002688,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15287,cg26106877,-0.00000757,0.00000522,-1.449740915,0.148141694,loss,ns,0.0000146,0.00000887,1.648173592,0.100330145,pos,ns,-0.00064676,0.002599853,-0.248767942,0.803705018,neg,ns,0.09490332,0.000142751,0.0000894,1.596614417,0.111370528,pos,ns,0.880511759,Gm8371,Gm8371_Intergenic_downstream,13,80195197,80195246,80195245,80195246,50,-,ATCATCTGCAGGCGATAAGTAGTCCAACATAGATAATTAGAGAATTTACG,Distal Intergenic,13,80161328,80161879,552,1,Gm8371-201,33918,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,4,666933,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1637,cg01904493,-0.00000344,0.00000112,-3.062482959,0.002387494,loss,ns,0.00000314,0.00000191,1.648049362,0.100355652,pos,ns,0.00095187,0.000558287,1.704981714,0.089199659,pos,ns,1.049636808,-0.0000298,0.0000192,-1.550761527,0.121979117,neg,ns,0.031568534,Hivep2,Hivep2_Promoter,10,13965784,13965833,13965784,13965785,50,+,CGCACTCCTCCTAGTAACTTCTGTTCGGGGAGGCGCTGCCAGGAATAACC,Promoter (<=1kb),10,13966075,14150589,184515,1,Hivep2-204,-242,Hivep2-204;Hivep2-201;Hivep2-205;Hivep2-203;Hivep2-202;Hivep2-206,Hivep2;Hivep2;Hivep2;Hivep2;Hivep2;Hivep2,0;0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,9,15273,ENSMUSG00000015501,conserved gene and region,10,13965769,13965970,202,*,202,21,0.717821782,0.827868853,0.103960396,1.08E-16,CpGisland,TRUE,U1,Pr-A
15690,cg02469681,-0.0000277,0.00000859,-3.22804804,0.001379862,loss,ns,0.0000241,0.0000146,1.647924289,0.100381337,pos,ns,0.001182927,0.00427702,0.276577327,0.782288986,pos,ns,0.106632784,-0.000212206,0.000147086,-1.442732496,0.150105465,neg,ns,0.814870855,Rbm46,Rbm46_Exon,3,82837267,82837316,82837267,82837268,50,+,CGCTGTCCAACATGGCTGCCATTAGCAAGTGATATTGTTGGTGACAAAGG,"Exon (Rbm46-201/Rbm46, exon 5 of 5)",3,82837228,82876483,39256,2,Rbm46-201,39167,Rbm46-201;Rbm46-202;Rbm46-203,Rbm46;Rbm46;Rbm46,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,633285,ENSMUSG00000033882,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24212,cg01898456,-0.00000272,0.00000245,-1.109666489,0.268002817,loss,ns,0.00000685,0.00000416,1.647750037,0.100417131,pos,ns,0.00334157,0.001218434,2.742512532,0.006451615,pos,ns,2.190331547,-0.000107821,0.0000419,-2.573184936,0.010541489,neg,ns,0.955393214,Ndst3,Ndst3_Exon,3,123560190,123560239,123560238,123560239,50,-,AAGTTCTCACCAGTTTTCTGGGGTCCTATTACCAAGAATTTTGGTAAGCG,"Exon (Ndst3-205/Ndst3, exon 8 of 14)",3,123526166,123690853,164688,2,Ndst3-205,130614,Ndst3-205;Ndst3-203;Ndst3-206;Ndst3-201;Ndst3-202;Ndst3-207;Ndst3-208;Ndst3-209;Ndst3-204,Ndst3;Ndst3;Ndst3;Ndst3;Ndst3;Ndst3;Ndst3;Ndst3;Ndst3,0;0;0;0;0;0;0;-61;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,83398,ENSMUSG00000027977,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23833,cg09125053,-0.0000154,0.0000174,-0.885159541,0.376756644,loss,ns,0.0000488,0.0000296,1.64770663,0.100426049,pos,ns,0.009443876,0.008679929,1.088013073,0.277434497,pos,ns,0.556839539,0.0000109,0.000298502,0.036516149,0.970894305,pos,ns,0.252536787,En1,En1_Promoter,1,120600020,120600069,120600020,120600021,50,+,CGCGGGTGCATTTATCATCCCATTACTGTAACAAATCCGGGCTCCACTAC,Promoter (2-3kb),1,120602418,120607992,5575,1,En1-201,-2349,En1-201,En1,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,23,36,13798,ENSMUSG00000058665,conserved gene and region,1,120599977,120600103,127,*,127,10,0.503937008,1.241446725,0.078740158,0.000000615,CpGisland,TRUE,U13,Hc-P
22661,cg00871526,-0.00000399,0.00000192,-2.080111264,0.038336543,loss,ns,0.00000537,0.00000326,1.647606364,0.100446651,pos,ns,0.001384909,0.000954742,1.450558649,0.147913855,pos,ns,0.829991144,-0.000041,0.0000328,-1.248706373,0.212714657,neg,ns,0.960930434,BC052040,BC052040_Intron,2,115643321,115643370,115643321,115643322,50,+,CGTAAAAGATTTATGAGTAATATTCAATGTGATATTCAAAGTGAGTCATG,"Intron (BC052040-203/BC052040, intron 5 of 10)",2,115581716,115778768,197053,1,BC052040-203,61605,BC052040-203;BC052040-201;BC052040-202,BC052040;BC052040;BC052040,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,37,49,399568,ENSMUSG00000040282,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13549,cg01676825,0.00000215,0.00000272,0.790740111,0.429700183,gain,ns,-0.0000076,0.00000461,-1.64756945,0.100454237,neg,ns,0.004798548,0.001351365,3.550889976,0.000443523,pos,ns,3.353083751,-0.000105449,0.0000465,-2.269025985,0.023953783,neg,ns,0.939595529,Dync1i2,Dync1i2_Intron,2,71245152,71245201,71245200,71245201,50,+,TAACCTTCACCATTTGGTTCAAAAGTATGAGCATATATTGAAATCACTCG,"Intron (Dync1i2-207/Dync1i2, intron 6 of 16)",2,71211706,71263298,51593,1,Dync1i2-207,33446,Dync1i2-207;Dync1i2-205;Dync1i2-206;Dync1i2-204;Dync1i2-211;Dync1i2-201;Dync1i2-208;Dync1i2-202;Dync1i2-203;Dync1i2-209,Dync1i2;Dync1i2;Dync1i2;Dync1i2;Dync1i2;Dync1i2;Dync1i2;Dync1i2;Dync1i2;Dync1i2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,6,13427,ENSMUSG00000027012,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18114,cg00902716,-0.00000307,0.00000418,-0.733682902,0.463696521,loss,ns,0.0000117,0.0000071,1.647555009,0.100457204,pos,ns,0.00024295,0.002080313,0.116785359,0.907105769,pos,ns,0.042342071,-0.0000232,0.0000715,-0.324094638,0.746084945,neg,ns,0.936191124,Cldn14,Cldn14_Exon,16,93919754,93919803,93919754,93919755,50,-,CGGTAGATCTGGCACTGGTAGATGCCTGTGCTGTGCCACACACACTCCAT,"Exon (Cldn14-205/Cldn14, exon 2 of 2)",16,93919031,93929567,10537,2,Cldn14-205,9764,Cldn14-205;Cldn14-204;Cldn14-201;Cldn14-203;Cldn14-202,Cldn14;Cldn14;Cldn14;Cldn14;Cldn14,0;0;0;0;10014,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,56173,ENSMUSG00000047109,conserved gene and region,16,93919476,93919755,280,*,280,20,0.639285714,0.699126092,0.071428571,1.19E-12,CpGisland,TRUE,U11,Tr-P
8347,cg23021688,-0.00000389,0.00000238,-1.635473127,0.102964813,loss,ns,0.00000665,0.00000404,1.647201297,0.100529916,pos,ns,0.001911959,0.001183097,1.616063536,0.107097761,pos,ns,0.970219607,-0.0000723,0.0000407,-1.775785779,0.076749157,neg,ns,0.948405784,Zeb2,Zeb2_Intron,2,45032571,45032620,45032619,45032620,50,-,TGTTACAGTTCTAGCTCTGCACAAGCTGCTACTTTTCTGCAATAAAAGCG,"Intron (Zeb2-212/Zeb2, intron 3 of 10)",2,44983632,45117395,133764,2,Zeb2-212,84775,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-218;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26076,cg04765298,-0.00000196,0.00000195,-1.006570628,0.314926181,loss,ns,0.00000545,0.00000331,1.647162347,0.100537926,pos,ns,0.001682193,0.00096907,1.735884362,0.083577892,pos,ns,1.077908586,-0.0000119,0.0000333,-0.357235579,0.721158521,neg,ns,0.067088948,Cdc73,Cdc73_Exon,1,143702495,143702544,143702543,143702544,50,+,CCCAAACAACATAGTTGGTCTTCACATTCTTGGGCCAGGAGAACTCCCCG,Promoter (<=1kb),1,143598800,143702893,104094,2,Cdc73-201,349,Cdc73-201;Cdc73-206;Cdc73-202,Cdc73;Cdc73;Cdc73,0;0;-295,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,214498,ENSMUSG00000026361,conserved gene and region,1,143702543,143703176,634,*,634,100,0.750788644,1.150155108,0.157728707,9.56E-99,CpGisland,TRUE,U1,Pr-A
14173,cg26317694,0.0000583,0.00000573,10.16469724,3.89E-21,gain,yes,-0.000016,0.00000974,-1.647154697,0.100539499,neg,ns,0.008516595,0.002854213,2.983868038,0.003072523,pos,ns,2.512504836,-0.000218234,0.0000982,-2.223338278,0.026913653,neg,ns,0.074995794,Gm28230,Gm28230_Intron,2,74732810,74732859,74732810,74732811,50,+,CGGAGAATTTTCTAAGTGCGAGGAAGATGATAAGAATAGATTTCTACAAG,"Intron (Hoxd3-203/Hoxd3, intron 1 of 2)",2,74726728,74747918,21191,1,Gm28230-201,6082,Gm28230-201;Hoxd3-203;Hoxd3-205;Hoxd3-202;Hoxd4-203;Hoxd4-201;Hoxd4-202,Gm28230;Hoxd3;Hoxd3;Hoxd3;Hoxd4;Hoxd4;Hoxd4,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,23,,NA,mapped to different genes,2,74732626,74733055,430,*,430,35,0.590697674,0.938923202,0.081395349,1.14E-23,CpGisland,TRUE,U13,Hc-P
23255,cg27073158,-0.00000961,0.00000366,-2.625621453,0.009078171,loss,ns,0.0000102,0.00000622,1.646827614,0.100606779,pos,ns,-0.00143206,0.001821798,-0.786069243,0.432427355,neg,ns,0.36408684,-0.000149115,0.0000627,-2.380072586,0.017913616,neg,ns,0.901307932,Eri3,Eri3_Intron,4,117624622,117624671,117624670,117624671,50,+,CACTGTTACTTTGATTGGTATTCTAACCTTTGACTAGCCCATAAAGCGCG,"Intron (Eri3-201/Eri3, intron 7 of 8)",4,117550365,117674297,123933,1,Eri3-201,74257,Eri3-201;Eri3-206,Eri3;Eri3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,82,97,140546,ENSMUSG00000033423,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22741,cg07259683,0.0000327,0.00000784,4.173106863,0.0000391,gain,ns,-0.0000219,0.0000133,-1.646699173,0.100633209,neg,ns,-0.00768941,0.003903517,-1.969866948,0.049743552,neg,ns,1.303263207,0.000284995,0.000134242,2.123002109,0.034545817,pos,ns,0.667229415,Meis2,Meis2_Intron,2,115876221,115876270,115876269,115876270,50,+,AACAGGGTTTTTCTTGGCCCTAACAAAGCTCTCAGGCATCTCCTTTGACG,"Intron (Meis2-201/Meis2, intron 9 of 11)",2,115863064,116065047,201984,2,Meis2-201,188777,Meis2-201;Meis2-203;Meis2-205;Meis2-206;Meis2-204;Meis2-202;Meis2-208;Meis2-216;Meis2-218;Meis2-214;Meis2-207;Meis2-215,Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,45,97,17536,ENSMUSG00000027210,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25106,cg14161189,-0.00000178,0.00000292,-0.611003435,0.541645047,loss,ns,0.00000817,0.00000496,1.646686513,0.100635815,pos,ns,0.003438668,0.001452895,2.366769848,0.018558376,pos,ns,1.73146004,-0.000111391,0.00005,-2.229392682,0.026504016,neg,ns,0.947973895,Mdm4,Mdm4_Exon,1,133004704,133004753,133004704,133004705,50,-,CGAGAGTCTGAGCAGCATCTGGATAGCAAGTAAAACAAAAGGAAAACCTT,"Exon (Mdm4-206/Mdm4, exon 6 of 11)",1,132959484,133025338,65855,2,Mdm4-206,20585,Mdm4-206;Mdm4-210;Mdm4-202;Mdm4-214;Mdm4-203;Mdm4-201;Mdm4-212;Mdm4-211;Mdm4-205;Mdm4-209;Mdm4-204;Mdm4-213,Mdm4;Mdm4;Mdm4;Mdm4;Mdm4;Mdm4;Mdm4;Mdm4;Mdm4;Mdm4;Mdm4;Mdm4,0;0;0;0;0;0;0;-379;-3283;-576;20577;25808,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,17248,ENSMUSG00000054387,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16368,cg06461219,0.000118748,0.0000139,8.520518585,7.03E-16,gain,yes,-0.000039,0.0000237,-1.646516256,0.100670859,neg,ns,0.004527011,0.00693645,0.652640969,0.514471437,pos,ns,0.288638732,-0.000128647,0.000238544,-0.539300538,0.590066614,neg,ns,0.330002856,Nfix,Nfix_Intron,8,84774568,84774617,84774616,84774617,50,-,GGTGGGGAGAGCCCCCGGCAGTTGGAGACCAAAAACAATTTGCCCAATCG,"Intron (Nfix-201/Nfix, intron 1 of 8)",8,84708614,84800140,91527,2,Nfix-201,25523,Nfix-204;Nfix-201;Nfix-202;Nfix-203;Nfix-205,Nfix;Nfix;Nfix;Nfix;Nfix,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,49,18032,ENSMUSG00000001911,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
88,cg04573180,-0.00000582,0.00000274,-2.128722478,0.034065414,loss,ns,-0.00000765,0.00000465,-1.646339765,0.100707196,neg,ns,-0.001218039,0.001361838,-0.894408155,0.371797432,neg,ns,0.429693614,-0.0000717,0.0000468,-1.530243014,0.126976357,neg,ns,0.042989878,Plag1,Plag1_fiveUTR,4,3938335,3938384,3938335,3938336,50,+,CGCCTCTTTCCAGCAGCCATTGTAGTGTATGCGCTGCCCCTGCAGCCCAA,Promoter (<=1kb),4,3900996,3938382,37387,2,Plag1-201,0,Chchd7-202;Chchd7-206;Chchd7-213;Chchd7-207;Chchd7-208;Chchd7-201;Chchd7-205;Chchd7-214;Chchd7-203;Chchd7-209;Chchd7-210;Chchd7-211;Chchd7-204;Plag1-201;Plag1-202;Plag1-204;Plag1-203,Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Plag1;Plag1;Plag1;Plag1,-504;-504;-506;-530;-530;-530;-530;-530;-536;-659;-1038;-1116;-2470;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,22,56711,ENSMUSG00000003282,conserved gene and region,4,3938107,3939194,1088,*,1088,119,0.706801471,0.896508745,0.109375,3.91E-95,CpGisland,TRUE,U1,Pr-A
7202,cg16906822,-0.00000162,0.00000145,-1.118746414,0.264114478,loss,ns,0.00000404,0.00000245,1.646128734,0.100750659,pos,ns,0.000605212,0.00071921,0.841495178,0.400719241,pos,ns,0.397159804,-0.0000143,0.0000247,-0.576779404,0.564507065,neg,ns,0.062964496,Tmem170b,Tmem170b_Exon,13,41606233,41606282,41606233,41606234,50,-,CGACCACTCCATGATCAACCTGTCGGTGCAGCAGGTCCTGAGCCTCTGGG,Promoter (<=1kb),13,41605907,41634651,28745,1,Tmem170b-202,326,Tmem170b-202;Tmem170b-201,Tmem170b;Tmem170b,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,621976,ENSMUSG00000087370,conserved gene and region,13,41605448,41606427,980,*,980,140,0.764285714,0.980154024,0.142857143,1.27E-130,CpGisland,TRUE,U1,Pr-A
22922,cg25714024,-0.00000434,0.00000747,-0.581095487,0.561598337,loss,ns,-0.0000209,0.0000127,-1.646125526,0.10075132,neg,ns,0.0000295,0.003717262,0.007925017,0.993681915,pos,ns,0.002752614,-0.000193537,0.000127836,-1.51394715,0.131058106,neg,ns,0.889236812,Meis2,Meis2_Intergenic_upstream,2,116213043,116213092,116213043,116213044,50,+,CGTAAAGTGCTGAAATTTAATATGATGCTTTCAGTCAGTTTAATTGAAAT,Distal Intergenic,2,115863064,116065839,202776,2,Meis2-206,-147204,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,97,17536,ENSMUSG00000027210,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5294,cg26306124,0.00012589,0.000021,5.985898584,5.94E-09,gain,yes,-0.0000588,0.0000357,-1.646117894,0.100752892,neg,ns,0.023125342,0.010467434,2.209265609,0.027887078,pos,ns,1.554596996,-0.000517434,0.000359974,-1.437420834,0.151607044,neg,ns,0.428746239,Atxn7l1,Atxn7l1_Exon,12,33344933,33344982,33344933,33344934,50,+,CGAGACAAAGAAACCTTGCACAAGATCCCTCACCTGCAAGGTATTTCTCT,"Exon (Atxn7l1-212/Atxn7l1, exon 6 of 13)",12,33147754,33373030,225277,1,Atxn7l1-212,197179,Atxn7l1-212;Atxn7l1-204;Atxn7l1-202;Atxn7l1-207;Atxn7l1-213;Atxn7l1-205,Atxn7l1;Atxn7l1;Atxn7l1;Atxn7l1;Atxn7l1;Atxn7l1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,24,380753,ENSMUSG00000020564,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10497,cg16072061,0.0000238,0.00000445,5.364078914,0.000000159,gain,yes,-0.0000124,0.00000755,-1.645934458,0.100790684,neg,ns,0.004293035,0.002212577,1.940287281,0.053251344,pos,ns,1.273669425,-0.000196531,0.0000761,-2.582861366,0.010256547,neg,ns,0.071911248,Samd12,Samd12_fiveUTR,15,53902374,53902423,53902422,53902423,50,+,ACAGCCATTCTCTCAGAGCTTCCCTAACGCATGCATAATTTTCTTGGCCG,Promoter (<=1kb),15,53462194,53902381,440188,2,Samd12-202,0,Samd12-201;Samd12-204;Samd12-202;Samd12-203,Samd12;Samd12;Samd12;Samd12,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,1,320679,ENSMUSG00000058656,conserved gene and region,15,53902401,53902649,249,*,249,19,0.602409639,0.905454546,0.076305221,1.44E-12,CpGisland,TRUE,U2,Pr-W
21722,cg20546446,0.0000187,0.00000686,2.721056915,0.006874987,gain,ns,-0.0000192,0.0000116,-1.645839752,0.1008102,neg,ns,-0.008199832,0.003412416,-2.402940079,0.016851263,neg,ns,1.773367534,0.000323877,0.000117353,2.759855527,0.006126779,pos,ns,0.131135791,Slitrk1,Slitrk1_fiveUTR,14,108913232,108913281,108913232,108913233,50,-,CGGCAAAACAAAGAGACGTCTCCAGCAACAGAATCCAAAGCAGCATTTTT,Promoter (<=1kb),14,108908800,108914158,5359,2,Slitrk1-201,877,Slitrk1-201,Slitrk1,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,7,17,76965,ENSMUSG00000075478,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
3801,cg14282244,0.0000127,0.0000035,3.643904869,0.000314724,gain,ns,-0.00000977,0.00000594,-1.645830851,0.100812034,neg,ns,-0.002301077,0.001739634,-1.322736294,0.186898023,neg,ns,0.728395293,0.0000187,0.0000598,0.313108599,0.754408705,pos,ns,0.914600188,Celf4,Celf4_Exon,18,25481685,25481734,25481685,25481686,50,+,CGGCAATTGTCATGCAACCGATTCTTAGCCTTGTTACATGACGCCATCAT,"Exon (Celf4-204/Celf4, exon 1 of 1)",18,25477632,25753983,276352,2,Celf4-202,272249,Celf4-202;Celf4-201;Celf4-203;Celf4-207;Celf4-206;Celf4-208;Celf4-204,Celf4;Celf4;Celf4;Celf4;Celf4;Celf4;Celf4,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,31,59,108013,ENSMUSG00000024268,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19917,cg22209761,0.00000035,0.00000203,0.172333439,0.863287849,gain,ns,0.00000568,0.00000345,1.645717558,0.100835385,pos,ns,0.003502334,0.001011808,3.461460418,0.000612674,pos,ns,3.212770608,-0.0000866,0.0000348,-2.489664393,0.01331025,neg,ns,0.948103955,Ogt,Ogt_Exon,X,101653962,101654011,101654010,101654011,50,-,GATATTGTATTTAGAAGGTTTCAGGTGGGTGAAACCTCCTATTCCATGCG,"Exon (Ogt-205/Ogt, exon 5 of 5)",20,101640060,101682940,42881,1,Ogt-202,13902,Ogt-202;Ogt-206;Ogt-201;Ogt-205;Ogt-204;Ogt-207;Ogt-203,Ogt;Ogt;Ogt;Ogt;Ogt;Ogt;Ogt,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,32,33,108155,ENSMUSG00000034160,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3764,cg11419859,0.00000146,0.00000113,1.295395311,0.196147693,gain,ns,-0.00000315,0.00000191,-1.645680547,0.100843014,neg,ns,0.000931582,0.000560598,1.661765973,0.097570564,pos,ns,1.010681182,-0.0000118,0.0000193,-0.613265493,0.540150487,neg,ns,0.01756731,Grin1,Grin1_Exon,2,25292431,25292480,25292431,25292432,50,+,CGGCAGCACTGTGTCTTTTTGGTTTTGCAAAGCGCCGCGTCCACCCCCGG,"Exon (Grin1-203/Grin1, exon 20 of 20)",2,25291181,25319095,27915,2,Grin1-203,26615,Grin1-203;Grin1-204;Grin1-207;Grin1-208;Grin1-201;Grin1-202;Grin1-206;Grin1-205;Grin1-209;Grin1-210;Lrrc26-201;Tmem210-201;Tmem210-202,Grin1;Grin1;Grin1;Grin1;Grin1;Grin1;Grin1;Grin1;Grin1;Grin1;Lrrc26;Tmem210;Tmem210,0;0;0;0;0;0;0;0;0;0;2516;4286;4230,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,7,14810,ENSMUSG00000026959,conserved gene and region,2,25292156,25292479,324,*,324,37,0.740740741,0.836216518,0.114197531,9.84E-31,CpGisland,TRUE,U3,Pr-B
19113,cg11879601,0.0000325,0.00000786,4.127294137,0.0000472,gain,ns,0.000022,0.0000134,1.645627394,0.100853972,pos,ns,0.012927695,0.003913609,3.303266682,0.001067487,pos,ns,2.971637429,-0.000323725,0.000134589,-2.405293084,0.016745168,neg,ns,0.104579682,Gm10320,Gm10320_Intergenic_upstream,13,98503412,98503461,98503460,98503461,50,-,GACCTAAGCAATTTTTAATGTACTCTATACTTCCCGCTTAATCCTCATCG,Distal Intergenic,13,98489348,98492001,2654,2,Gm10320-201,-11460,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,7,101055909,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
18669,cg05759873,0.0000209,0.00000376,5.562420563,5.75E-08,gain,yes,-0.0000105,0.00000638,-1.645578149,0.100864124,neg,ns,0.003078392,0.001869379,1.646746376,0.100623495,pos,ns,0.9973006,-0.00000464,0.0000643,-0.072168307,0.942514505,neg,ns,0.042109121,Tenm4,Tenm4_Exon,7,96644150,96644199,96644198,96644199,50,-,TGTCCCTAATTCATTCTTAGTTAAAAGTGGCTCCGCCAGCCTGGGGGTCG,Promoter (<=1kb),7,96644172,96732280,88109,1,Tenm4-207,0,Tenm4-201;Tenm4-203;Tenm4-202;Tenm4-207,Tenm4;Tenm4;Tenm4;Tenm4,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,17,26,23966,ENSMUSG00000048078,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24606,cg27607149,0.00000598,0.00000596,1.002725767,0.316775237,gain,ns,-0.0000167,0.0000101,-1.645464204,0.100887619,neg,ns,-0.002218898,0.002967949,-0.747619941,0.455256164,neg,ns,0.341744166,-0.000282452,0.000102068,-2.767306391,0.005991826,neg,ns,0.802349591,Dtx3,Dtx3_Exon,10,127191462,127191511,127191510,127191511,50,-,AGGGTCAGCACCTTGTTGCCCTCAGGGCAGTCCGGGAGGTAGGCCACCCG,"Exon (Dtx3-201/Dtx3, exon 5 of 6)",10,127190378,127195709,5332,2,Dtx3-201,4198,Arhgef25-210;Arhgef25-205;Arhgef25-201;Arhgef25-202;Arhgef25-212;Arhgef25-206;Arhgef25-203;Arhgef25-204;Arhgef25-207;Dtx3-201;Dtx3-204;Dtx3-202;Dtx3-205;Dtx3-206;Dtx3-203,Arhgef25;Arhgef25;Arhgef25;Arhgef25;Arhgef25;Arhgef25;Arhgef25;Arhgef25;Arhgef25;Dtx3;Dtx3;Dtx3;Dtx3;Dtx3;Dtx3,0;0;0;0;0;-4239;0;0;0;0;0;0;0;0;4208,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,80904,ENSMUSG00000040415,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25755,cg24950900,-0.00000641,0.00000314,-2.039021037,0.042295873,loss,ns,-0.00000879,0.00000534,-1.645435665,0.100893504,neg,ns,-0.003331064,0.001564591,-2.12903226,0.034039563,neg,ns,1.468016028,-0.000011,0.0000538,-0.205036675,0.837678034,neg,ns,0.868196147,Ubr4,Ubr4_Exon,4,139440488,139440537,139440488,139440489,50,+,CGTCAGGAAAGCCAGGAACAGAGTGAGGTGGACCATGGAGATTTTGAGAT,"Exon (Ubr4-212/Ubr4, exon 57 of 106)",4,139352609,139469763,117155,1,Ubr4-210,87879,Ubr4-210;Ubr4-212;Ubr4-201;Ubr4-203;Ubr4-202,Ubr4;Ubr4;Ubr4;Ubr4;Ubr4,0;0;0;0;5478,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,10,69116,ENSMUSG00000066036,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14442,cg00708404,-0.000000829,0.00000106,-0.783129786,0.434148763,loss,ns,-0.00000296,0.0000018,-1.645163387,0.100949667,neg,ns,0.0000674,0.000527168,0.127919513,0.89829561,pos,ns,0.046580723,-0.0000162,0.0000181,-0.892305129,0.372921511,neg,ns,0.97397979,Crk,Crk_Exon,11,75692641,75692690,75692641,75692642,50,-,CGCTCCCTAACCTCCAGAATGGGCCCATATATGCCAGGGTTATCCAGAAG,"Exon (Crk-201/Crk, exon 2 of 3)",11,75679259,75706065,26807,1,Crk-201,13382,Crk-201;Crk-204;Crk-203;Crk-202;Crk-205,Crk;Crk;Crk;Crk;Crk,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,7,12928,ENSMUSG00000017776,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3537,cg02629039,-0.0000271,0.00000679,-3.990013135,0.0000825,loss,ns,0.000019,0.0000115,1.644757763,0.101033381,pos,ns,-0.006391503,0.003378103,-1.892039315,0.05941747,neg,ns,1.226085845,0.000188149,0.000116173,1.619567333,0.106342071,pos,ns,0.778357167,Pax8,Pax8_Exon,2,24443082,24443131,24443130,24443131,50,+,CCTTGGGCTTGGAGCCCCCTATCACTCCAGGCCGGATGCTGCCAGTCTCG,"Exon (Gm13415-203/Gm13415-203, exon 1 of 1)",2,24420560,24475599,55040,2,Pax8-201,32468,Pax8-201;Pax8-204;Pax8-208;Pax8-203;Pax8-207;Pax8-202,Pax8;Pax8;Pax8;Pax8;Pax8;Pax8,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,6,18510,ENSMUSG00000026976,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19937,cg04118146,0.00000551,0.00000235,2.338575671,0.019992706,gain,ns,-0.00000658,0.000004,-1.644673595,0.101050759,neg,ns,-0.000851678,0.001171787,-0.726819906,0.467884765,neg,ns,0.329861096,0.0000456,0.0000403,1.131805142,0.258591101,pos,ns,0.954915708,Uchl3,Uchl3_Exon,14,101685616,101685665,101685664,101685665,50,-,ACGAAGGCCTCATCATTGTGTCACCATGCATCCCTGCCCTGGGTCAAACG,"Exon (Uchl3-202/Uchl3, exon 5 of 8)",14,101653994,101696125,42132,1,Uchl3-201,31622,Uchl3-201;Uchl3-205;Uchl3-202,Uchl3;Uchl3;Uchl3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,50933,ENSMUSG00000022111,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19501,cg05251553,-0.0000236,0.000015,-1.576212533,0.115996745,loss,ns,0.0000419,0.0000255,1.644643403,0.101056993,pos,ns,0.023594899,0.007466733,3.160003157,0.001733421,pos,ns,2.761095842,-0.000560507,0.00025678,-2.182826341,0.029798596,neg,ns,0.40176817,Gm12684,Gm12684_Intergenic_upstream,4,99459847,99459896,99459895,99459896,50,+,ACATATCCTGAGGCTTTGCACCTGAAATAAATGTTTGCTTGACATTAACG,Distal Intergenic,4,99430256,99431254,999,2,Gm12684-201,-28593,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,8,665212,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9424,cg25061778,0.0000797,0.0000167,4.767471014,0.00000287,gain,ns,-0.0000467,0.0000284,-1.644475853,0.101091595,neg,ns,0.030730793,0.008320186,3.69352242,0.00026133,pos,ns,3.582811192,-0.001335163,0.000286131,-4.666273069,0.00000457,neg,ns,0.37622987,Sorcs3,Sorcs3_Exon,19,48704260,48704309,48704308,48704309,50,+,GACGACCAGGTGAAGACATACATCACTTACAACAAAGGCAGGGATTGGCG,"Exon (Sorcs3-201/Sorcs3, exon 10 of 27)",19,48206025,48805505,599481,1,Sorcs3-201,498235,Sorcs3-201;Sorcs3-202,Sorcs3;Sorcs3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,66673,ENSMUSG00000063434,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10266,cg10620616,0.0000902,0.00000793,11.36932944,2.87E-25,gain,yes,-0.0000222,0.0000135,-1.644381695,0.101111045,neg,ns,0.010610184,0.003947345,2.687929311,0.007578072,pos,ns,2.120441274,0.0000367,0.000135749,0.270450261,0.786993845,pos,ns,0.24517861,Evx1,Evx1_Exon,6,52314794,52314843,52314794,52314795,50,+,CGCCAGGTCGGAAATGGTCCCAATGGTCTAATTGCCTTTGGTCTCCGGTT,"Exon (Evx1os-201/Evx1os-201, exon 1 of 4)",6,52313498,52318378,4881,1,Evx1-201,1296,Evx1-201;Evx1-202,Evx1;Evx1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,19,14028,ENSMUSG00000005503,mapped to different genes,6,52314451,52314858,408,*,408,26,0.558823529,0.82392233,0.06372549,4.74E-15,CpGisland,TRUE,U13,Hc-P
12825,cg01495882,-0.0000278,0.00000971,-2.862346693,0.004491411,loss,ns,0.0000271,0.0000165,1.644373549,0.101112727,pos,ns,0.027449052,0.004831015,5.681839359,3.07E-08,pos,ns,7.512581911,-0.00065435,0.000166138,-3.938588681,0.000101288,neg,ns,0.313433892,Ebf2,Ebf2_Intron,14,67242263,67242312,67242263,67242264,50,+,CGGCCAGATGGTGTGAATTTAGACACTTTTGTTATGCAATCGCAGGGAGG,"Intron (Ebf2-201/Ebf2, intron 6 of 16)",14,67233292,67429777,196486,1,Ebf2-201,8971,Ebf2-201;Ebf2-203;Ebf2-202,Ebf2;Ebf2;Ebf2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,21,13592,ENSMUSG00000022053,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25087,cg04019067,-0.00000228,0.00000134,-1.704559089,0.089278613,loss,ns,-0.00000374,0.00000227,-1.644342556,0.10111913,neg,ns,-0.000457821,0.00066603,-0.687387789,0.492352329,neg,ns,0.307724004,0.00000761,0.0000229,0.332146789,0.740002886,pos,ns,0.972717468,Fgfr2,Fgfr2_Intron,7,132666029,132666078,132666077,132666078,50,-,ACCTAATATAATCCATAGATCAATGGGTTTGGAGCTAATTAAGGCAACCG,"Intron (Lhpp-201/Lhpp, intron 6 of 6)",7,130162451,133123350,2960900,2,Fgfr2-217,457272,Fgfr2-217;Lhpp-201;Lhpp-202;Lhpp-204;Lhpp-206;Lhpp-207,Fgfr2;Lhpp;Lhpp;Lhpp;Lhpp;Lhpp,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,58,79,14183,ENSMUSG00000030849,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
959,cg05056257,-0.00000496,0.00000198,-2.503917782,0.012796271,loss,ns,0.00000554,0.00000337,1.644320026,0.101123785,pos,ns,0.000945423,0.000986335,0.958520857,0.338547134,pos,ns,0.470380858,-0.0000204,0.0000339,-0.600552053,0.548577177,neg,ns,0.025683931,Taf3,Taf3_fiveUTR,2,10048362,10048411,10048362,10048363,50,-,CGAGACCCTCAACAACGACCTGGAGTAACTCTCGCACATCCCGCTGCGTG,Promoter (<=1kb),2,9914552,10048596,134045,2,Taf3-201,185,Taf3-201,Taf3,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,7,209361,ENSMUSG00000025782,conserved gene but different region,2,10047801,10048828,1028,*,1028,84,0.660505837,0.750052116,0.081712062,5.22E-56,CpGisland,TRUE,NA,NRS
2419,cg13647345,-0.0000131,0.00000711,-1.838030627,0.067014621,loss,ns,-0.0000199,0.0000121,-1.644300544,0.10112781,neg,ns,-0.00700749,0.003538368,-1.980429888,0.048539033,neg,ns,1.31390888,0.0000542,0.000121684,0.445353025,0.656375486,pos,ns,0.850081559,Gm12025,Gm12025_Intergenic_downstream,11,19350647,19350696,19350695,19350696,50,+,GACCCACACACGTTAAATGGTGTAATGTTCCATTTCTTCAGCCATTAGCG,Distal Intergenic,11,19360926,19361069,144,2,Gm12025-201,10373,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,4,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18433,cg14090030,-0.0000975,0.0000153,-6.352432158,7.55E-10,loss,yes,0.0000429,0.0000261,1.644079578,0.101173471,pos,ns,-0.007876888,0.007637301,-1.031370538,0.303171066,neg,ns,0.518312249,-0.0000272,0.000262646,-0.103416231,0.9176995,neg,ns,0.643043015,Gm44603,Gm44603_Intergenic_downstream,7,95639922,95639971,95639922,95639923,50,-,CGTCTCTAGGTATCTTGTCTCAATAAAGTTTATAGAATGCATTCCCAAAG,Distal Intergenic,7,95474946,95475312,367,1,Gm44603-201,165025,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11037,cg00598343,-0.0000113,0.00000495,-2.276221039,0.02351449,loss,ns,0.0000138,0.00000841,1.643661529,0.101259903,pos,ns,0.001983214,0.002464369,0.804755591,0.421577491,pos,ns,0.375122586,-0.0000257,0.0000847,-0.303567036,0.761661406,neg,ns,0.884015653,Cox6c2,Cox6c2_Intergenic_upstream,12,56387682,56387731,56387730,56387731,50,+,CACTTGGAGTTCTGAATATTTTAAAGCATAATTCCCACAGAAGGGATTCG,Distal Intergenic,12,56373593,56373823,231,2,Cox6c2-201,-13859,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,102640946,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1625,cg25568239,-0.000000447,0.00000716,-0.062326926,0.950342652,loss,ns,-0.00002,0.0000122,-1.643406691,0.10131262,neg,ns,-0.00021439,0.003565814,-0.060123793,0.952095781,neg,ns,0.021319359,-0.000128206,0.000122628,-1.045487137,0.296612406,neg,ns,0.939113631,Zfp521,Zfp521_Intron,18,13897304,13897353,13897304,13897305,50,+,CGATATTAAATCCAACTTCTGCTCATATCAGGGTATTAGTGATGTACGAC,"Intron (Zfp521-201/Zfp521, intron 3 of 7)",18,13687013,13972787,285775,2,Zfp521-201,75434,Zfp521-201;Zfp521-204;Zfp521-203;Zfp521-202,Zfp521;Zfp521;Zfp521;Zfp521,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,81,225207,ENSMUSG00000024420,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7970,cg09955247,0.0000542,0.00000475,11.40804972,2.10E-25,gain,yes,-0.0000133,0.00000807,-1.642915077,0.10141438,neg,ns,0.004736243,0.002364991,2.002646974,0.046085734,pos,ns,1.336433496,-0.000107483,0.0000813,-1.321541911,0.187295209,neg,ns,0.127552854,Pax2,Pax2_Intergenic_upstream,19,44671228,44671277,44671276,44671277,50,-,TTAATAATCTGTCATCAGGACCAGAGGCAGTCATAAATTATATGGGAGCG,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-84817,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,19,44671276,44671313,38,*,38,6,0.684210526,1.425,0.157894737,0.00000546,CpGisland,TRUE,U13,Hc-P
4519,cg22762903,-0.00000704,0.00000679,-1.035834297,0.301086784,loss,ns,0.000019,0.0000115,1.642865144,0.101424721,pos,ns,0.001766597,0.003380985,0.522509524,0.601688816,pos,ns,0.220628061,0.0000379,0.000116272,0.325945923,0.744685183,pos,ns,0.817686219,Gm6989,Gm6989_Intergenic_upstream,12,29410392,29410441,29410440,29410441,50,+,CCCTGTTCTAACGACTCTCCTTATTACCTGACAATCTATCTGAACTATCG,Distal Intergenic,12,29316915,29317568,654,2,Gm6989-201,-92824,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,629608,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23236,cg22134386,-0.0000188,0.00000388,-4.852096385,0.00000194,loss,ns,-0.0000108,0.0000066,-1.642804021,0.101437379,neg,ns,-0.005068501,0.001932841,-2.622306713,0.009164973,neg,ns,2.037868802,0.000237591,0.0000665,3.574398149,0.000406963,pos,ns,0.922116797,Eri3,Eri3_Intron,4,117576414,117576463,117576462,117576463,50,+,GACGGGTAATTTATAAGCTTTGCCCTAAAATCTAATTATTTGGCAATTCG,"Intron (Eri3-201/Eri3, intron 3 of 8)",4,117550365,117674297,123933,1,Eri3-201,26049,Eri3-201;Eri3-205;Eri3-206,Eri3;Eri3;Eri3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,82,97,140546,ENSMUSG00000033423,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25136,cg12135540,-0.000166291,0.0000152,-10.91802356,1.07E-23,loss,yes,-0.0000425,0.0000259,-1.64273823,0.101451006,neg,ns,0.07210536,0.007580579,9.511853858,5.45E-19,pos,yes,18.26390134,-0.003080309,0.000260695,-11.81573612,7.55E-27,neg,yes,0.695882069,Ahdc1,Ahdc1_Intron,4,133049443,133049492,133049491,133049492,50,-,GGAACAAAGCTGGCATCGAGGCCTCAGCTAAAATTAGCCGCTTCCCTGCG,"Intron (Ahdc1-210/Ahdc1, intron 2 of 3)",4,133011260,133060820,49561,1,Ahdc1-210,38183,Ahdc1-210;Ahdc1-203;Ahdc1-204;Ahdc1-205;Ahdc1-207;Ahdc1-211;Ahdc1-209;Ahdc1-206;Ahdc1-201;Ahdc1-202,Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,35,49,230793,ENSMUSG00000037692,conserved gene and region,4,133049491,133049561,71,*,71,8,0.704225352,0.914653784,0.112676056,0.000000866,CpGisland,TRUE,NA,NRS
27275,cg24560445,0.0000504,0.00000789,6.386034403,6.22E-10,gain,yes,-0.000022,0.0000134,-1.642562151,0.101487483,neg,ns,0.010655154,0.003924992,2.714694085,0.007005276,pos,ns,2.154574733,-0.000345407,0.00013498,-2.558944775,0.010973692,neg,ns,0.129650223,Srsf6,Srsf6_threeUTR,2,162932944,162932993,162932944,162932945,50,-,CGACAGCAGCCTTTTGCCATTAGACGCAGGGTGATGGTGAGGATTCCAAG,3' UTR,2,162931528,162935208,3681,1,Srsf6-204,1416,Srsf6-204;Srsf6-203;Srsf6-201;Srsf6-202,Srsf6;Srsf6;Srsf6;Srsf6,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,4,67996,ENSMUSG00000016921,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U4,Pr-F
2828,cg15112657,0.00000421,0.00000453,0.928532433,0.353853864,gain,ns,-0.0000126,0.0000077,-1.642464365,0.101507746,neg,ns,-0.010547738,0.002254725,-4.678058495,0.00000433,neg,ns,5.363401378,0.000215184,0.0000775,2.775143802,0.005852782,pos,ns,0.903216641,Reln,Reln_Exon,5,21925393,21925442,21925393,21925394,50,-,CGGAAGCGAGTGGCAATCTCTTTAGCATCAGGAGGGAGAAGGATATTCAC,"Exon (Reln-207/Reln, exon 50 of 65)",5,21884454,22344702,460249,2,Reln-207,419260,Reln-207;Reln-201;Reln-203,Reln;Reln;Reln,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,6,19699,ENSMUSG00000042453,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1762,cg12475683,0.0000854,0.0000101,8.471658743,9.89E-16,gain,yes,-0.0000281,0.0000171,-1.642366592,0.101528008,neg,ns,0.009057482,0.005014354,1.806311058,0.071839473,pos,ns,1.143636864,-0.000479175,0.000172443,-2.778740599,0.005789955,neg,ns,0.108342711,Kctd1,Kctd1_Intron,18,15066166,15066215,15066214,15066215,50,+,GGTTGGACGCTCCGGGAAACAAAGCAACCCAAAACAGCTCCCAGTTGACG,"Intron (Kctd1-201/Kctd1, intron 1 of 4)",18,14968685,15151446,182762,2,Kctd1-201,85231,Kctd1-201;Kctd1-202;Kctd1-206;Kctd1-205,Kctd1;Kctd1;Kctd1;Kctd1,0;0;0;-4277,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,24,106931,ENSMUSG00000036225,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17496,cg00300233,0.0000394,0.00000941,4.184939786,0.0000372,gain,ns,0.0000263,0.000016,1.642289766,0.101543932,pos,ns,0.02710613,0.004683266,5.787869474,1.75E-08,pos,ns,7.758165407,-0.000612674,0.000161057,-3.804078288,0.000171446,neg,ns,0.877423963,Chtop,Chtop_fiveUTR,3,90506231,90506280,90506231,90506232,50,+,CGGCTGTTTGTTCTTCAGCATATTAGTAAAGCTTCAAGGTCGAACAAAAT,5' UTR,3,90498956,90509450,10495,2,Chtop-205,3170,Chtop-205;Chtop-201;Chtop-206;Chtop-203;Chtop-202;Chtop-207;Chtop-204;Chtop-209;Chtop-208;S100a1-201;S100a1-202,Chtop;Chtop;Chtop;Chtop;Chtop;Chtop;Chtop;Chtop;Chtop;S100a1;S100a1,0;0;0;0;0;0;0;0;0;8112;7998,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,10,66511,ENSMUSG00000001017,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1956,cg17237388,-0.0000439,0.00000623,-7.052476022,1.15E-11,loss,yes,0.0000174,0.0000106,1.642181215,0.101566436,pos,ns,-0.006263572,0.003100586,-2.020125063,0.044230233,neg,ns,1.354280771,0.0000973,0.000106629,0.912439237,0.362246572,pos,ns,0.899724272,Hgf,Hgf_Exon,5,16578429,16578478,16578477,16578478,50,-,GGTGTGGTTTGCAGATATCCCGACAAGGGCTTTGATGATAATTATTGCCG,"Exon (Hgf-204/Hgf, exon 8 of 19)",5,16553550,16620152,66603,1,Hgf-204,24879,Hgf-202;Hgf-204;Hgf-201;Hgf-203,Hgf;Hgf;Hgf;Hgf,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,8,15234,ENSMUSG00000028864,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20925,cg10639365,-0.0000026,0.00000103,-2.509207696,0.012610053,loss,ns,0.00000289,0.00000176,1.64213688,0.101575628,pos,ns,0.001389816,0.000514877,2.699317715,0.007329379,pos,ns,2.134932802,-0.0000404,0.0000177,-2.282605277,0.023130601,neg,ns,0.972490743,Tanc2,Tanc2_Exon,11,105713441,105713490,105713489,105713490,50,+,CCAGTGAGTGAAGGTATGCAGCACATTCGGATTATGGAGGGCATGTCTCG,"Exon (Tanc2-207/Tanc2, exon 4 of 5)",11,105589986,105776834,186849,1,Tanc2-207,123455,Tanc2-207;Tanc2-202;Tanc2-203;Tanc2-208;Tanc2-206,Tanc2;Tanc2;Tanc2;Tanc2;Tanc2,0;0;0;0;-50,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,15,20,77097,ENSMUSG00000053580,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5767,cg06176190,0.000022,0.0000116,1.900938618,0.05823733,gain,ns,0.0000323,0.0000197,1.642134923,0.101576033,pos,ns,0.010349438,0.005764158,1.795481392,0.073550868,pos,ns,1.133412199,-0.000325663,0.000198229,-1.64286121,0.101425535,neg,ns,0.037493975,Sox2,Sox2_Intron,3,34662036,34662085,34662084,34662085,50,-,CAATCGCTTTATTATTTAATAACGTCAAACGCTTCGTTGGATTGGCCCCG,"Intron (Sox2ot-203/Sox2ot-203, intron 3 of 3)",3,34650405,34652461,2057,1,Sox2-201,11680,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,34,62,20674,ENSMUSG00000074637,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
12040,cg07314277,0.00000605,0.00000234,2.588590368,0.010091111,gain,ns,-0.00000652,0.00000397,-1.642005547,0.101602861,neg,ns,-0.003735714,0.001164031,-3.209289832,0.001469991,neg,ns,2.832685396,0.0000932,0.00004,2.32810074,0.020549866,pos,ns,0.937426734,Fbxo38,Fbxo38_Exon,18,62515061,62515110,62515061,62515062,50,+,CGTTCCTCATCAGAACACCTGCTAGTTCTCCTTTGGGATTCCTGGGGCCT,"Exon (Fbxo38-201/Fbxo38, exon 15 of 22)",18,62504155,62548695,44541,2,Fbxo38-201,33585,Fbxo38-201;Fbxo38-203;Fbxo38-204,Fbxo38;Fbxo38;Fbxo38,0;0;5619,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,6,107035,ENSMUSG00000042211,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14626,cg05776266,-0.0000138,0.00000636,-2.174811118,0.030400006,loss,ns,0.0000177,0.0000108,1.641973057,0.101609599,pos,ns,0.007743867,0.003166619,2.445468306,0.015022463,pos,ns,1.823258844,-0.000136564,0.0001089,-1.254035893,0.210773759,neg,ns,0.348773481,Max,Max_Exon,12,76940038,76940087,76940038,76940039,50,+,CGCATATACTGGATATATTCTGTGGCTTTGTCTAGGATTTGGGCCCGGGA,"Exon (Max-202/Max, exon 4 of 5)",12,76937269,76962185,24917,2,Max-202,22098,Max-202;Max-201;Max-205;Max-206;Max-204,Max;Max;Max;Max;Max,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,5,17187,ENSMUSG00000059436,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4494,cg25773508,0.000075,0.0000049,15.32012312,7.81E-40,gain,yes,-0.0000137,0.00000832,-1.641842386,0.101636702,neg,ns,0.006392261,0.00243817,2.621744892,0.009179759,pos,ns,2.037168718,-0.000074,0.0000838,-0.8825558,0.378160162,neg,ns,0.125779073,Spred3,Spred3_Promoter,7,29168968,29169017,29169016,29169017,50,+,CCCAGCCCCCTTTTCTCAATGGGATGGGATTTTGTGAATGAGCAGTCACG,Promoter (<=1kb),7,29165923,29169841,3919,2,Spred3-202,824,Ggn-202;Ggn-201;Ggn-203;Ggn-205;Ggn-204;Spred3-201;Spred3-203;Spred3-202;Spred3-204,Ggn;Ggn;Ggn;Ggn;Ggn;Spred3;Spred3;Spred3;Spred3,-1193;-1373;-1373;-1390;-1487;0;-1818;0;1394,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,2,7,101809,ENSMUSG00000037239,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
1249,cg03840462,0.0000393,0.00000916,4.291288507,0.0000238,gain,ns,0.0000255,0.0000156,1.641783034,0.101649015,pos,ns,0.023116494,0.004558744,5.070803384,0.000000683,pos,ns,6.165608991,-0.000736203,0.000156775,-4.695928586,0.00000399,neg,ns,0.101341394,Bcor,Bcor_Intron,X,12135938,12135987,12135986,12135987,50,-,AAGAGAAAGGTCTGCAGCTGACAAATATTATCCATTCTCCCCATCGATCG,"Intron (Bcor-201/Bcor, intron 1 of 13)",20,12036743,12160355,123613,2,Bcor-201,24368,Bcor-201;Bcor-208,Bcor;Bcor,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,56,74,71458,ENSMUSG00000040363,conserved gene and region,X,12135982,12136053,72,*,72,10,0.666666667,1.252173913,0.138888889,2.10E-09,CpGisland,TRUE,NA,NRS
24307,cg23950645,0.00000519,0.00000713,0.727525723,0.46745306,gain,ns,0.0000199,0.0000121,1.641766134,0.101652521,pos,ns,0.000466779,0.003549254,0.131514739,0.895453439,pos,ns,0.047956991,0.000152033,0.000122059,1.24557567,0.213860822,pos,ns,0.859099281,Pou3f1,Pou3f1_Intron,4,124586826,124586875,124586874,124586875,50,+,CCCTCTTGACATCATAAAGGACTTGATATTTCGCTAATGTTATCTTGGCG,"Intron (Gm2164-201/Gm2164-201, intron 1 of 1)",4,124656807,124660655,3849,1,Pou3f1-201,-69932,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,43,85,18991,ENSMUSG00000090125,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25796,cg14139150,0.0000535,0.00000676,7.914083386,4.46E-14,gain,yes,-0.0000189,0.0000115,-1.641716488,0.101662821,neg,ns,0.005715188,0.003366137,1.697847755,0.090540015,pos,ns,1.04315944,-0.0000189,0.000115761,-0.163150358,0.870506357,neg,ns,0.119923832,Uncx,Uncx_Intergenic_downstream,5,139548998,139549047,139549046,139549047,50,+,TGTCGCTTATATTGATGTTGCTGCGTTATCAGCCTATTGATCATGTGTCG,Distal Intergenic,5,139543898,139545268,1371,1,Uncx-202,5100,Uncx-201;Uncx-202,Uncx;Uncx,0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,59,88,22255,ENSMUSG00000029546,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
2380,cg01530089,0.000018,0.00000693,2.594247022,0.00993011,gain,ns,0.0000193,0.0000118,1.641576709,0.101691826,pos,ns,0.002464377,0.00344919,0.714479822,0.475468184,pos,ns,0.322878538,0.000017,0.000118617,0.143178398,0.88624231,pos,ns,0.121058355,Tfap2b,Tfap2b_Intron,1,19217446,19217495,19217494,19217495,50,+,GCGCCAGCATGCTGCGTGAATATCCTGTACAAAAACCCAGCAGGCGGCCG,"Intron (Tfap2b-201/Tfap2b, intron 2 of 6)",1,19208914,19238576,29663,1,Tfap2b-201,8532,Tfap2b-201;Tfap2b-204;Tfap2b-202;Tfap2b-205;Tfap2b-203,Tfap2b;Tfap2b;Tfap2b;Tfap2b;Tfap2b,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,40,21419,ENSMUSG00000025927,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
21458,cg13162533,-0.00000348,0.00000123,-2.832983237,0.004913733,loss,ns,-0.00000342,0.00000209,-1.641566759,0.10169389,neg,ns,-0.001242476,0.000611171,-2.032944634,0.04290991,neg,ns,1.367442398,-0.00000368,0.000021,-0.17505823,0.861148161,neg,ns,0.036323163,Zswim6,Zswim6_Intron,13,107831362,107831411,107831362,107831363,50,+,CGCGGCCGCATTCCTAAACAGTTCAGACAAACCCACTGGTGGGAAGCTTC,"Intron (Zswim6-204/Zswim6, intron 1 of 12)",13,107724617,107890064,165448,2,Zswim6-204,58653,Zswim6-204;Zswim6-201,Zswim6;Zswim6,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,26,67263,ENSMUSG00000032846,conserved gene and region,13,107831216,107831369,154,*,154,16,0.694805195,0.902564103,0.103896104,8.54E-13,CpGisland,TRUE,U2,Pr-W
7460,cg05506365,0.000203943,0.0000174,11.70235406,1.91E-26,gain,yes,-0.0000486,0.0000296,-1.641563476,0.101694572,neg,ns,0.012893112,0.008673874,1.486430626,0.138181564,pos,ns,0.859549896,-0.000266389,0.000298294,-0.893041374,0.372527743,neg,ns,0.126020084,Pou3f3,Pou3f3_Exon,1,42697367,42697416,42697367,42697368,50,+,CGACTTCATGCAGGGGGCCATGGCCGCCAGCAACGGCGGCCATATGCTGA,"Exon (Pou3f3-202/Pou3f3, exon 4 of 4)",1,42694925,42703176,8252,1,Pou3f3-202,2442,Pou3f3-202;Pou3f3-201,Pou3f3;Pou3f3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,37,18993,ENSMUSG00000045515,conserved gene and region,1,42696575,42698226,1652,*,1652,217,0.762106538,0.905802448,0.131355932,1.22E-192,CpGisland,TRUE,NA,NRS
1064,cg06480468,0.00000777,0.00000877,0.886040123,0.376282707,gain,ns,0.0000245,0.0000149,1.641543086,0.101698803,pos,ns,-0.003811385,0.004365278,-0.873113995,0.383276752,neg,ns,0.416487522,0.000234764,0.000150122,1.563829253,0.118877897,pos,ns,0.810673399,H2al1j,H2al1j_Intergenic_downstream,X,11420906,11420955,11420906,11420907,50,+,CGTCTGCTCCGACATGATGCCTCCGAGTAATGTAATTTATATTTCATGCA,Distal Intergenic,20,11327822,11328151,330,1,H2al1j-201,93084,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,236663,ENSMUSG00000069038,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16458,cg24706083,0.0000129,0.0000209,0.62074021,0.535226671,gain,ns,0.0000582,0.0000354,1.641460097,0.101716028,pos,ns,0.027587016,0.010382864,2.656975584,0.008292879,pos,ns,2.081294674,-0.000296973,0.000357066,-0.831704997,0.406215666,neg,ns,0.916231751,Usp32,Usp32_threeUTR,11,85036506,85036555,85036554,85036555,50,+,CTCAGGCTCATCATACCCATATTCACCCAGATGTTAGACTGCTGTGTCCG,3' UTR,11,84984442,85140038,155597,2,Usp32-202,103483,Usp32-202;Usp32-208;Usp32-203,Usp32;Usp32;Usp32,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,2,237898,ENSMUSG00000000804,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22173,cg02180222,-0.000000787,0.0000031,-0.254220397,0.799493836,loss,ns,-0.00000864,0.00000526,-1.641453126,0.101717475,neg,ns,-0.001603578,0.001541292,-1.040411265,0.298959621,neg,ns,0.524387465,-0.0000507,0.000053,-0.956623131,0.339502927,neg,ns,0.926002274,Gm11676,Gm11676_Intergenic_downstream,11,111563341,111563390,111563389,111563390,50,-,AGGCTGTGTCTGCCAATAACAGGAGCCCAATAAAGTTAATTGTTTCTCCG,Distal Intergenic,11,111612817,111613306,490,2,Gm11676-201,49965,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,100041559,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26197,cg17040006,-0.00000378,0.00000396,-0.956106087,0.339763638,loss,ns,0.000011,0.00000672,1.641373206,0.101734065,pos,ns,0.005706994,0.001970091,2.896816971,0.00403796,pos,ns,2.393838011,-0.000200426,0.0000678,-2.95826144,0.003331887,neg,ns,0.922270602,Sox5,Sox5_Intron,6,144367898,144367947,144367898,144367899,50,-,CGCATATTAAATTAAATCCATAAATAAGAGTTTAGGCATTCACTCGGAAG,"Intron (Sox5-209/Sox5, intron 4 of 13)",6,143843739,144781977,938239,2,Sox5-209,414030,Sox5-209;Sox5-212,Sox5;Sox5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,71,20678,ENSMUSG00000041540,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19401,cg06915569,-0.00000122,0.00000126,-0.972812844,0.331404779,loss,ns,0.00000351,0.00000214,1.641333621,0.101742283,pos,ns,0.001870866,0.000626573,2.985872199,0.003053025,pos,ns,2.515269601,-0.0000503,0.0000215,-2.334830117,0.020190391,neg,ns,0.962525776,Foxp1,Foxp1_Intron,6,99233640,99233689,99233688,99233689,50,-,GTTCGGTGCCAGGCAAAACTGATTAAATGGGGCTCTTAAGAATCAAAGCG,"Intron (Foxp1-206/Foxp1, intron 2 of 17)",6,98925338,99266515,341178,2,Foxp1-206,32826,Foxp1-206;Foxp1-204;Foxp1-220;Foxp1-221;Foxp1-222;Foxp1-223;Foxp1-202;Foxp1-211;Foxp1-212;Foxp1-224,Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,87,108655,ENSMUSG00000030067,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21961,cg06706416,-0.00000918,0.00000259,-3.547417906,0.000449177,loss,ns,-0.00000722,0.0000044,-1.641227688,0.101764278,neg,ns,0.000840349,0.00128866,0.652110973,0.514812796,pos,ns,0.288350667,-0.0000846,0.0000443,-1.910017241,0.057053639,neg,ns,0.937214617,Ap1g1,Ap1g1_Exon,8,109833193,109833242,109833193,109833194,50,+,CGAATTTTGCGGTTATTAAGAATTTTAGGACGAAATGATGATGATTCAAG,"Exon (Ap1g1-202/Ap1g1, exon 9 of 24)",8,109778554,109864204,85651,1,Ap1g1-202,54639,Ap1g1-202;Ap1g1-201,Ap1g1;Ap1g1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,11,16,11765,ENSMUSG00000031731,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27149,cg03206084,0.00000134,0.00000269,0.496608361,0.619817219,gain,ns,0.0000075,0.00000457,1.64111547,0.101787581,pos,ns,0.001035601,0.001339377,0.773196136,0.439995474,pos,ns,0.356551791,-0.0000551,0.0000461,-1.19693671,0.23224575,neg,ns,0.917458316,Tnr,Tnr_Intron,1,159551258,159551307,159551306,159551307,50,-,GAGTAATTACAGTTGAGGCCCTGATGAATTGGGGGCCAGTAATTAAAGCG,"Intron (Tnr-202/Tnr, intron 1 of 22)",1,159523769,159931729,407961,1,Tnr-202,27489,Tnr-202;Tnr-205,Tnr;Tnr,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,13,21960,ENSMUSG00000015829,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16042,cg22710109,0.0000226,0.00000512,4.421819392,0.0000136,gain,ns,-0.0000143,0.00000869,-1.641072681,0.101796469,neg,ns,-0.001154548,0.002547036,-0.45329095,0.65065637,neg,ns,0.186648314,0.0000972,0.0000876,1.109927083,0.267890674,pos,ns,0.884199914,Bnc2,Bnc2_Intron,4,84282354,84282403,84282354,84282355,50,+,CGTCTGTTGTAATAACAGGTAGGATGTATTGGGGTCGACCATTTATCAGA,"Intron (Bnc2-201/Bnc2, intron 7 of 7)",4,84275095,84675034,399940,2,Bnc2-201,392631,Bnc2-201;Bnc2-202;Bnc2-214;Bnc2-218;Bnc2-215;Bnc2-222;Bnc2-216;Bnc2-213;Bnc2-219,Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,91,242509,ENSMUSG00000028487,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16227,cg09718446,0.00000254,0.00000213,1.194125628,0.233341749,gain,ns,0.00000593,0.00000362,1.641013025,0.10180886,pos,ns,0.000462297,0.001059514,0.436329369,0.662901496,pos,ns,0.178551001,0.0000119,0.0000364,0.326634295,0.74416492,pos,ns,0.94728133,Bnc2,Bnc2_Intron,4,84616087,84616136,84616087,84616088,50,+,CGCTACCAGATGCAAATCTCTCAATCGTCAAGGGAAGACTATGGCAAATT,"Intron (Bnc2-201/Bnc2, intron 1 of 7)",4,84275095,84675034,399940,2,Bnc2-201,58898,Bnc2-201;Bnc2-202;Bnc2-214;Bnc2-215;Bnc2-206;Bnc2-211;Bnc2-217;Bnc2-207;Bnc2-203;Bnc2-209;Bnc2-204;Bnc2-210,Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,91,242509,ENSMUSG00000028487,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19607,cg26380556,-0.000012,0.00000581,-2.061061078,0.040130968,loss,ns,-0.0000162,0.00000987,-1.640977096,0.101816323,neg,ns,-0.01164598,0.002890325,-4.02929815,0.0000704,neg,ns,4.152182145,0.000292685,0.0000994,2.944572402,0.003478617,pos,ns,0.842967112,Hnrnpdl,Hnrnpdl_threeUTR,5,100035696,100035745,100035744,100035745,50,-,ATAGACGTGGTCAGGGTGACACACGGCCTGCAATGAAGTTCCCGCTGGCG,Promoter (<=1kb),5,100033577,100036068,2492,2,Hnrnpdl-203,323,Enoph1-202;Enoph1-201;Enoph1-203;Hnrnpdl-203;Hnrnpdl-202;Hnrnpdl-207;Hnrnpdl-201;Hnrnpdl-204;Hnrnpdl-205;Hnrnpdl-206,Enoph1;Enoph1;Enoph1;Hnrnpdl;Hnrnpdl;Hnrnpdl;Hnrnpdl;Hnrnpdl;Hnrnpdl;Hnrnpdl,0;0;0;0;0;0;0;0;0;1378,TRUE,FALSE,TRUE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,8,8,50926,ENSMUSG00000029328,conserved gene and region,5,100035645,100035745,101,*,101,9,0.613861386,0.945889698,0.089108911,0.000001,CpGisland,TRUE,U12,Tr-I
17615,cg05212484,-0.0000411,0.00000563,-7.292233548,2.56E-12,loss,yes,-0.0000157,0.00000957,-1.640870258,0.101838518,neg,ns,0.003564762,0.00280251,1.27198924,0.204330302,pos,ns,0.689667224,-0.000400985,0.0000964,-4.160542157,0.0000412,neg,ns,0.872849859,Elavl2,Elavl2_Exon,4,91253346,91253395,91253394,91253395,50,+,GTCATAGTCACAAATCCAAAACCTTTGCATTTATTGGTGTTAAAGTCACG,"Exon (Elavl2-204/Elavl2, exon 6 of 6)",4,91250763,91372034,121272,2,Elavl2-204,118639,Elavl2-204;Elavl2-201;Elavl2-207;Elavl2-208;Elavl2-202;Elavl2-209;Elavl2-210;Elavl2-206;Elavl2-203;Elavl2-205,Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,31,15569,ENSMUSG00000008489,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12562,cg26363341,0.0000182,0.00000714,2.546974767,0.01134916,gain,ns,-0.0000199,0.0000121,-1.640861552,0.101840327,neg,ns,-0.004509842,0.003551816,-1.269728423,0.205133692,neg,ns,0.687963003,0.0000549,0.000122147,0.449301645,0.653528028,pos,ns,0.870722478,Pikfyve,Pikfyve_threeUTR,1,65224262,65224311,65224262,65224263,50,-,CGTGAACTTCCATATCAAGAAGCCCTCCAAGTACCCACATGTGCCCCCTC,3' UTR,1,65186689,65246898,60210,1,Pikfyve-209,37573,Pikfyve-209;Pikfyve-207;Pikfyve-201;Pikfyve-205;Pikfyve-202,Pikfyve;Pikfyve;Pikfyve;Pikfyve;Pikfyve,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,4,18711,ENSMUSG00000025949,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4177,cg24624575,-0.0000039,0.00000364,-1.07160156,0.284732581,loss,ns,-0.0000101,0.00000618,-1.640776289,0.101858043,neg,ns,-0.002655819,0.001809368,-1.467815578,0.143168181,neg,ns,0.844153493,0.0000127,0.0000622,0.20394865,0.838527448,pos,ns,0.899781634,Vldlr,Vldlr_Exon,19,27239903,27239952,27239903,27239904,50,+,CGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCTACTG,"Exon (Vldlr-204/Vldlr, exon 9 of 17)",19,27216484,27249755,33272,1,Vldlr-204,23419,Vldlr-204;Vldlr-208;Vldlr-202;Vldlr-207;Vldlr-201;Vldlr-206,Vldlr;Vldlr;Vldlr;Vldlr;Vldlr;Vldlr,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,4,22359,ENSMUSG00000024924,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26330,cg10202628,0.0000453,0.00000712,6.360493285,7.20E-10,gain,yes,0.0000199,0.0000121,1.640658233,0.101882578,pos,ns,0.005926414,0.003545708,1.671432906,0.095645291,pos,ns,1.019336407,-0.0000246,0.000121937,-0.201591906,0.84036799,neg,ns,0.717623938,Kiz,Kiz_Intergenic_upstream,2,146823718,146823767,146823766,146823767,50,+,AATTCAGGCCTCCCTCGCATCAGTCATCAGCTTCAATTACCAGTTTTCCG,Distal Intergenic,2,146855864,146970097,114234,1,Kiz-201,-32097,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,29,228730,ENSMUSG00000074749,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14735,cg02009466,-0.0000066,0.00000498,-1.324686685,0.186250774,loss,ns,0.0000139,0.00000846,1.640624217,0.101889648,pos,ns,0.003429292,0.002479459,1.383080908,0.167635384,pos,ns,0.775634306,-0.000140846,0.0000853,-1.651797398,0.099588383,neg,ns,0.904576329,2210408I21Rik,2210408I21Rik_Intron,13,77490445,77490494,77490445,77490446,50,+,CGACAAAATGTTTTATAAGCTTGTAACAATATGTGTGAAGCTGCCAGAAT,"Intron (2210408I21Rik-201/2210408I21Rik, intron 19 of 19)",13,77135540,77613784,478245,1,2210408I21Rik-201,354905,2210408I21Rik-201,2210408I21Rik,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,19,20,72371,ENSMUSG00000071252,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2224,cg04611179,-0.00000874,0.0000024,-3.646270274,0.000311961,loss,ns,0.00000668,0.00000407,1.640564439,0.101902073,pos,ns,0.00277639,0.001192833,2.327559493,0.020579021,pos,ns,1.686575298,-0.000117518,0.000041,-2.864793044,0.004457762,neg,ns,0.057390077,Bmi1,Bmi1_Promoter,2,18676838,18676887,18676838,18676839,50,+,CGGACTCCGAGCCATTTTGGAGCCGGTGTCAGTTTCCACTCTGCCTTCAG,Promoter (<=1kb),2,18677018,18686629,9612,1,Bmi1-201,-131,Bmi1-201;Bmi1-203;Bmi1-206;Bmi1-202;Bmi1-207;Bmi1-204;Bmi1-205;Commd3-212;Commd3-201;Commd3-210;Commd3-205;Commd3-211;Commd3-206;Commd3-203;Commd3-204;Commd3-207;Commd3-202;Commd3-208;Commd3-209,Bmi1;Bmi1;Bmi1;Bmi1;Bmi1;Bmi1;Bmi1;Commd3;Commd3;Commd3;Commd3;Commd3;Commd3;Commd3;Commd3;Commd3;Commd3;Commd3;Commd3,0;-393;-920;0;-3487;-4107;-4220;4454;4415;4405;4403;4402;4315;3180;2877;2753;2491;2414;2189,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,6,12151,ENSMUSG00000026739,conserved gene but different region,2,18676145,18676890,746,*,746,96,0.719839142,1.004713805,0.128686327,1.37E-84,CpGisland,TRUE,U1,Pr-A
21072,cg21479643,-0.0000094,0.00000594,-1.582012606,0.114666373,loss,ns,-0.0000166,0.0000101,-1.640499516,0.10191557,neg,ns,-0.007022848,0.002956527,-2.375371215,0.018139194,neg,ns,1.741382006,0.000264028,0.000101675,2.59679002,0.009858483,pos,ns,0.862966179,Smpd3,Smpd3_Intron,8,106301076,106301125,106301124,106301125,50,-,GGCACCATTAGGAGACACAAAAGACTCAGAAAACACAGTTTCAGGGGGCG,"Intron (Smpd3-201/Smpd3, intron 1 of 8)",8,106252548,106337988,85441,2,Smpd3-201,36863,Smpd3-201,Smpd3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,2,58994,ENSMUSG00000031906,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14219,cg04585017,0.000180817,0.0000153,11.84015628,6.18E-27,gain,yes,-0.0000426,0.0000259,-1.640369699,0.101942561,neg,ns,-0.0065761,0.007600792,-0.865186168,0.387605647,neg,ns,0.411609905,0.000146987,0.000261391,0.562328094,0.574298887,pos,ns,0.374386612,Onecut1,Onecut1_Intergenic_upstream,9,74847035,74847084,74847035,74847036,50,-,CGCTGACCCTGGCTCCCCCATCAGCTGCCCTGAAACCTTAATTGAATGAC,Distal Intergenic,9,74861921,74891781,29861,1,Onecut1-201,-14886,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,28,15379,ENSMUSG00000043013,conserved gene and region,9,74846816,74847046,231,*,231,14,0.584415584,0.709833187,0.060606061,4.34E-08,CpGisland,TRUE,NA,NRS
15916,cg12711852,-0.00005,0.000017,-2.937227669,0.003559757,loss,ns,0.0000474,0.0000289,1.640344729,0.101947753,pos,ns,-0.013393933,0.008470745,-1.581198925,0.114852278,neg,ns,0.939860388,0.00054933,0.000291308,1.885736082,0.060265352,pos,ns,0.525381153,Gm5452,Gm5452_Intron,13,83869183,83869232,83869183,83869184,50,-,CGGGCCCAGGGAAACCTCTAGTCTTCATTTGCATGCTGAAGAATATCCAG,"Intron (C130071C03Rik-204/C130071C03Rik-204, intron 3 of 3)",13,83832340,83833336,997,1,Gm5452-201,36892,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,16,432789,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11959,cg13876637,0.0000117,0.00000503,2.333131425,0.020280608,gain,ns,-0.000014,0.00000855,-1.640308138,0.101955362,neg,ns,-0.007643471,0.002504402,-3.052015044,0.002469791,neg,ns,2.607339811,0.000194999,0.0000861,2.26411382,0.024257787,pos,ns,0.082993961,Tbr1,Tbr1_Exon,2,61804829,61804878,61804829,61804830,50,+,CGACCACTGACAACCTGGAGAGAAGTTCACCTTTGAAAAAAATTACCAGG,Promoter (<=1kb),2,61804453,61814114,9662,1,Tbr1-201,376,Psmd14-201;Psmd14-208;Psmd14-202;Tbr1-204;Tbr1-201;Tbr1-202;Tbr1-203,Psmd14;Psmd14;Psmd14;Tbr1;Tbr1;Tbr1;Tbr1,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,24,27,21375,ENSMUSG00000035033,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
2347,cg14825374,0.0000769,0.00000876,8.774182584,1.17E-16,gain,yes,-0.0000244,0.0000149,-1.640268136,0.101963681,neg,ns,0.009058391,0.004359618,2.077794727,0.038551022,pos,ns,1.413964109,-0.000161232,0.000149927,-1.07540648,0.283029047,neg,ns,0.101406129,Tfap2d,Tfap2d_Exon,1,19104375,19104424,19104375,19104376,50,+,CGGATCAAACAGCTACCGTTTGATGCAGCTTGGCTGTCTGGAGTCAGTAG,"Exon (Tfap2d-201/Tfap2d, exon 2 of 8)",1,19103022,19166346,63325,1,Tfap2d-201,1353,Tfap2d-201;Tfap2d-202,Tfap2d;Tfap2d,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,23,226896,ENSMUSG00000042596,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
12625,cg01314454,-0.0000167,0.00000668,-2.495726617,0.013089446,loss,ns,0.0000186,0.0000114,1.640161231,0.101985916,pos,ns,-0.001419182,0.003325368,-0.426774345,0.669839925,neg,ns,0.174028971,-0.000165242,0.000114359,-1.444935827,0.14948595,neg,ns,0.898369609,Kcnq3,Kcnq3_Exon,15,66005825,66005874,66005825,66005826,50,-,CGCTCTTTATTGTTTAAGCCAACAGGCTTTGGTTCTTTAGAAGGACTTTC,"Exon (Kcnq3-201/Kcnq3, exon 10 of 15)",15,65986387,66286642,300256,2,Kcnq3-201,280768,Kcnq3-201,Kcnq3,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,110862,ENSMUSG00000056258,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7033,cg01766000,0.0000956,0.00000719,13.30024667,3.03E-32,gain,yes,-0.00002,0.0000122,-1.640143714,0.10198956,neg,ns,0.009363464,0.003577284,2.617478934,0.009292729,pos,ns,2.031856718,0.0000228,0.000123022,0.185629572,0.85285666,pos,ns,0.154440896,Tfap2a,Tfap2a_Intergenic_downstream,13,40709134,40709183,40709182,40709183,50,+,ATCCATGGACACTCGAGCAATTATGCCTCCACGCTGAAGGTGGATTAGCG,Distal Intergenic,13,40716724,40728944,12221,2,Tfap2a-209,19761,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,15,57,21418,ENSMUSG00000021359,mapped to different genes,13,40709088,40709361,274,*,274,22,0.653284672,0.763037975,0.080291971,5.99E-15,CpGisland,TRUE,U13,Hc-P
11051,cg05725590,0.0000452,0.0000166,2.723578173,0.006823968,gain,ns,-0.0000462,0.0000282,-1.640008846,0.102017618,neg,ns,0.007441664,0.008255412,0.901428559,0.3680603,pos,ns,0.434081024,-0.000212464,0.000283903,-0.748366705,0.454806385,neg,ns,0.580422413,Gm13518,Gm13518_Intergenic_downstream,2,56456832,56456881,56456880,56456881,50,+,CTCCTCTGAAGTTTGGTTTTACATTTGTTAACCATATCCTTCAGCTGACG,Distal Intergenic,2,56039853,56040085,233,1,Gm13518-201,416979,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,37,37,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5820,cg07249939,-0.0000351,0.00000554,-6.333962424,8.39E-10,loss,yes,0.0000154,0.00000941,1.639896303,0.102041035,pos,ns,-0.004563272,0.002756043,-1.655733081,0.09878777,neg,ns,1.005296819,0.000233385,0.0000948,2.462385015,0.014345315,pos,ns,0.962152113,C2,C2_Exon,17,34896327,34896376,34896327,34896328,50,+,CGCTGTGGCAAGCAGTTCAACCACAGCAGCAACCTCAACCGCCACATGAA,"Exon (Zbtb12-201/Zbtb12, exon 2 of 2)",17,34893353,34898265,4913,2,C2-207,1889,C2-205;C2-208;C2-207;Ehmt2-204;Ehmt2-202;Ehmt2-203;Ehmt2-201;Ehmt2-212;Zbtb12-202;Zbtb12-201,C2;C2;C2;Ehmt2;Ehmt2;Ehmt2;Ehmt2;Ehmt2;Zbtb12;Zbtb12,-780;-770;0;0;0;0;0;-3318;16844;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,12263,ENSMUSG00000024371,mapped to different genes,17,34896297,34896535,239,*,239,15,0.585774059,0.777488614,0.062761506,7.80E-09,CpGisland,TRUE,U8,En-Pd
13185,cg00907438,0.0000534,0.00000931,5.738037225,2.28E-08,gain,yes,0.0000259,0.0000158,1.639759617,0.102069482,pos,ns,0.003576241,0.004635135,0.771550506,0.440968418,pos,ns,0.355592514,-0.000247434,0.000159402,-1.552264629,0.1216192,neg,ns,0.414487972,Tcf4,Tcf4_Intron,18,69675338,69675387,69675386,69675387,50,+,GGGTACGAATCAGTGCGCTCCACTGCAGCACCCTGGGAGGCAATTTGACG,"Intron (Tcf4-201/Tcf4, intron 16 of 20)",18,69344146,69684343,340198,1,Tcf4-201,331192,Tcf4-201;Tcf4-207;Tcf4-240;Tcf4-254;Tcf4-246;Tcf4-206;Tcf4-202;Tcf4-257;Tcf4-248;Tcf4-205;Tcf4-253;Tcf4-238;Tcf4-249;Tcf4-250;Tcf4-226;Tcf4-230;Tcf4-234;Tcf4-258;Tcf4-252;Tcf4-243;Tcf4-204;Tcf4-222;Tcf4-255;Tcf4-203;Tcf4-251;Tcf4-214,Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,42,66,21413,ENSMUSG00000053477,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5418,cg10230808,-0.00000699,0.0000143,-0.489741228,0.624663406,loss,ns,0.0000397,0.0000242,1.639425724,0.102138999,pos,ns,-0.002270697,0.007099909,-0.319820584,0.749319779,neg,ns,0.125332804,-0.000239912,0.000244165,-0.982582258,0.326579308,neg,ns,0.77165363,Gm27165,Gm27165_Intergenic_upstream,9,33887183,33887232,33887183,33887184,50,-,CGGCTGATGGATATGAAAAAATAAATTACTGTGGCAAAATGTAATAAACA,Distal Intergenic,9,33931644,33931875,232,1,Gm27165-201,-44461,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1582,cg04068658,-0.00000715,0.00000431,-1.658265463,0.098275357,loss,ns,0.000012,0.00000733,1.639266243,0.102172217,pos,ns,0.003657941,0.002147295,1.703511315,0.089474601,pos,ns,1.04830023,-0.000177337,0.0000738,-2.401469491,0.016917872,neg,ns,0.908261695,Zfp521,Zfp521_Intron,18,13790655,13790704,13790655,13790656,50,+,CGGTTCTGTATCCAACTGAACAGTTGGTCCTCTACTGCTAGATAATCAAA,"Intron (Zfp521-201/Zfp521, intron 5 of 7)",18,13687013,13972787,285775,2,Zfp521-201,182083,Zfp521-201;Zfp521-205;Zfp521-204,Zfp521;Zfp521;Zfp521,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,81,225207,ENSMUSG00000024420,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10122,cg11898602,0.000160148,0.0000149,10.71243145,5.44E-23,gain,yes,-0.0000416,0.0000254,-1.639099463,0.102206964,neg,ns,0.021547092,0.007440637,2.895866413,0.004049883,pos,ns,2.392557568,-0.000316242,0.000255883,-1.23588697,0.217436252,neg,ns,0.322002232,Gm28308,Gm28308_Intron,6,52196871,52196920,52196919,52196920,50,+,GAGGTCATTCAACCACTAGGGTTCACCTGGAGTCCATACCGTGATACACG,"Intron (Hoxaas3-202/Hoxaas3-202, intron 1 of 2)",6,52163359,52213339,49981,2,Gm28308-201,16419,Gm28308-201;Hoxa3-201;Hoxa3-203;Hoxa5-201,Gm28308;Hoxa3;Hoxa3;Hoxa5,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,46,103,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
20041,cg25643033,-0.0000129,0.00000383,-3.376377513,0.000828029,loss,ns,0.0000107,0.00000651,1.6389237,0.102243592,pos,ns,-0.002579167,0.001906392,-1.352904314,0.17707206,neg,ns,0.75184996,0.000125807,0.0000656,1.91893455,0.055910625,pos,ns,0.927269687,Hdac8,Hdac8_Exon,X,102307683,102307732,102307683,102307684,50,-,CGGTCTGGCCGGCAGCTTGGCGTGATTTCCAGCACATAATCAGGACCATA,"Exon (Hdac8-201/Hdac8, exon 10 of 11)",20,102284639,102505359,220721,2,Hdac8-201,197627,Hdac8-201,Hdac8,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,7,70315,ENSMUSG00000067567,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26767,cg11329836,0.0000383,0.00000989,3.873680578,0.000130814,gain,ns,0.0000275,0.0000168,1.638726987,0.102284599,pos,ns,0.004389819,0.004924416,0.89143957,0.37338477,pos,ns,0.4278434,-0.000139444,0.00016935,-0.823405185,0.410910604,neg,ns,0.792338712,Iqsec2,Iqsec2_Exon,X,152209204,152209253,152209204,152209205,50,+,CGGCTCTGTCCACCGCCAGCTGGTGTATGAGGCTGATGGCTGCAGCCCCC,"Exon (Iqsec2-207/Iqsec2, exon 5 of 15)",20,152144268,152225235,80968,1,Iqsec2-207,64936,Iqsec2-207;Iqsec2-202;Iqsec2-203;Iqsec2-201,Iqsec2;Iqsec2;Iqsec2;Iqsec2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,16,245666,ENSMUSG00000041115,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3191,cg19384462,-0.0000356,0.00000709,-5.020291126,0.000000872,loss,yes,-0.0000197,0.000012,-1.63870431,0.102289327,neg,ns,-0.007794833,0.003528348,-2.209201872,0.027891555,neg,ns,1.554527276,0.000184732,0.00012134,1.522441167,0.128917967,pos,ns,0.877317891,Gpat4,Gpat4_Intergenic_downstream,8,23168894,23168943,23168942,23168943,50,+,TAAAACAATTTTAAAGTGATTAAGTAGTTTAACACCTGTCTCCCGTCACG,Downstream (2-3kb),8,23178797,23180227,1431,2,Gpat4-203,11284,Gpat4-201,Gpat4,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,3,4,102247,ENSMUSG00000031545,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8848,cg06683245,-0.00000522,0.00000386,-1.351857044,0.177406555,loss,ns,-0.0000108,0.00000656,-1.63868294,0.102293783,neg,ns,-0.000693751,0.00192298,-0.360768694,0.71851808,neg,ns,0.143562299,0.0000498,0.0000661,0.752853465,0.452109297,pos,ns,0.849095304,Ldb1,Ldb1_Exon,19,46033245,46033294,46033245,46033246,50,-,CGTCAAACTGGGTGTTCTCCAGCCGGGTGATGAGCCTCTCGTCCTCGTCC,"Exon (Ldb1-207/Ldb1, exon 11 of 11)",19,46031570,46045210,13641,2,Ldb1-207,11916,Ldb1-207;Ldb1-206;Ldb1-202;Ldb1-208;Ldb1-201;Ldb1-205;Ldb1-203;Ldb1-204,Ldb1;Ldb1;Ldb1;Ldb1;Ldb1;Ldb1;Ldb1;Ldb1,0;0;0;0;0;0;1584;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,9,16825,ENSMUSG00000025223,conserved gene and region,19,46033191,46033306,116,*,116,12,0.637931035,1.01978022,0.103448276,1.21E-09,CpGisland,TRUE,U10,Tr-S
1497,cg08289686,-0.00000489,0.00000344,-1.420149914,0.156568949,loss,ns,0.00000958,0.00000584,1.638632563,0.102304288,pos,ns,0.0000789,0.001712307,0.046064909,0.963288175,pos,ns,0.016243771,-0.0000298,0.0000589,-0.506011998,0.613207866,neg,ns,0.043487974,Ddx3x,Ddx3x_fiveUTR,X,13281090,13281139,13281138,13281139,50,-,CGAGTTCTCGGTACTCTTCAGGGATGAGTCATGTGGCAGTGGAAAATGCG,Promoter (<=1kb),20,13280970,13294052,13083,1,Ddx3x-201,120,Ddx3x-201;Ddx3x-205;Ddx3x-204,Ddx3x;Ddx3x;Ddx3x,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,6,13205,ENSMUSG00000000787,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
12890,cg09637123,-0.0000278,0.00000619,-4.496309311,0.00000978,loss,ns,-0.0000172,0.0000105,-1.638590871,0.102312982,neg,ns,-0.010722463,0.003079378,-3.482022224,0.000569145,neg,ns,3.244776736,0.000059,0.0001059,0.557419213,0.577643303,pos,ns,0.894519871,Igf1r,Igf1r_Exon,7,68004277,68004326,68004325,68004326,50,-,GAGAAGCCGATGTGTGAGAAGACCACCATCAACAATGAGTACAACTACCG,"Exon (Igf1r-201/Igf1r, exon 2 of 21)",7,67952827,68233668,280842,1,Igf1r-201,51450,Igf1r-201,Igf1r,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,9,16001,ENSMUSG00000005533,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14203,cg13073507,-0.00000287,0.00000241,-1.189425786,0.23518237,loss,ns,0.00000672,0.0000041,1.638574433,0.10231641,pos,ns,0.002203673,0.001201903,1.833487141,0.067688827,pos,ns,1.169483011,-0.0000295,0.0000413,-0.714138081,0.475679156,neg,ns,0.07089048,Mnt,Mnt_Promoter,11,74830318,74830367,74830318,74830319,50,+,CGCGGGGTGTCCATGTGGAGCTGCTCCATGCCGTGTTGTCCTGCCCGCCC,Promoter (<=1kb),11,74830920,74845725,14806,1,Mnt-201,-553,Mettl16-205;Mnt-201,Mettl16;Mnt,59488;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,17,17428,ENSMUSG00000000282,conserved gene and region,11,74830213,74830575,363,*,363,30,0.633608815,0.824001211,0.082644628,1.43E-20,CpGisland,TRUE,U1,Pr-A
21012,cg14883247,0.000111832,0.0000104,10.76647807,3.55E-23,gain,yes,-0.0000289,0.0000176,-1.638421329,0.102348343,neg,ns,0.012929093,0.00516974,2.500917601,0.012902967,pos,ns,1.889310402,-0.000200742,0.000177787,-1.129116851,0.259721526,neg,ns,0.213273653,Gm19566,Gm19566_Intergenic_upstream,5,106056888,106056937,106056888,106056889,50,+,CGCTTACATTCACAAGGTGTGATTGCCTAAGTGTTTGTCTGTGTCTAATT,Distal Intergenic,5,105980573,105981182,610,2,Gm19566-201,-75706,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,8,100503127,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25328,cg21226286,0.0000349,0.00000724,4.824884183,0.0000022,gain,ns,0.0000201,0.0000123,1.638036164,0.102428713,pos,ns,0.013515077,0.003601064,3.753079283,0.000208504,pos,ns,3.680886179,0.0000786,0.00012384,0.634689813,0.526098866,pos,ns,0.116654211,Runx3,Runx3_Exon,4,135154426,135154475,135154426,135154427,50,-,CGTCAGATCGGAGGTTTTACTGTCACTTGGAGCTTAAAAGGAGTCTTTGA,Promoter (<=1kb),4,135154436,135155342,907,1,Runx3-203,0,Runx3-201;Runx3-202;Runx3-206;Runx3-204;Runx3-205;Runx3-203,Runx3;Runx3;Runx3;Runx3;Runx3;Runx3,0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,6,12399,ENSMUSG00000070691,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8953,cg14057041,0.0000149,0.00000611,2.436933838,0.015374703,gain,ns,-0.000017,0.0000104,-1.637903109,0.102456489,neg,ns,-0.005717179,0.003040046,-1.880622699,0.060960565,neg,ns,1.214951018,0.000143112,0.000104547,1.368873657,0.172029824,pos,ns,0.827056586,4931429L15Rik,4931429L15Rik_Intergenic_upstream,9,46411793,46411842,46411793,46411794,50,-,CGCAAAGTGCTGATTTTATTGAGTGCGACAAGTGGCAGTTCATTAAAAAG,Distal Intergenic,9,46303361,46319986,16626,2,4931429L15Rik-201,-91856,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,12,22,74361,ENSMUSG00000056617,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3473,cg08610539,0.00000845,0.000005,1.690289431,0.091977817,gain,ns,-0.0000139,0.0000085,-1.637886256,0.102460007,neg,ns,-0.006616296,0.002489373,-2.657815983,0.008272698,neg,ns,2.082352849,0.000100445,0.0000856,1.173291998,0.241579427,pos,ns,0.900939538,Bcl11a,Bcl11a_Exon,11,24163539,24163588,24163539,24163540,50,+,CGAGTGCCTTTGACAGGGTGCTGCGGTTGAATCCAATGGCTATGGAGCCT,"Exon (Bcl11a-201/Bcl11a, exon 4 of 5)",11,24078056,24173194,95139,1,Bcl11a-201,85483,Bcl11a-201;Bcl11a-203;Bcl11a-202;Bcl11a-204;Bcl11a-206,Bcl11a;Bcl11a;Bcl11a;Bcl11a;Bcl11a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,51,98,14025,ENSMUSG00000000861,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4232,cg17269062,0.0000118,0.00000504,2.343598072,0.019730296,gain,ns,-0.000014,0.00000856,-1.637830666,0.102471614,neg,ns,-0.003937021,0.002507371,-1.570178661,0.11739365,neg,ns,0.930355395,-0.0000205,0.0000862,-0.2373634,0.812531671,neg,ns,0.754886029,Trio,Trio_threeUTR,15,27744144,27744193,27744144,27744145,50,-,CGTGTAATCGTGTGTCACCAACATGGTGGAGATGTTGCTACTGCTGCTGC,Promoter (<=1kb),15,27742266,27744164,1899,2,Trio-214,0,Trio-212;Trio-201;Trio-208;Trio-206;Trio-214;Trio-211;Trio-205,Trio;Trio;Trio;Trio;Trio;Trio;Trio,-1821;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,8,11,223435,ENSMUSG00000022263,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18956,cg23234941,-0.0000176,0.00000597,-2.940217318,0.003526523,loss,ns,0.0000166,0.0000102,1.637828019,0.102472167,pos,ns,0.007333678,0.002973784,2.466109819,0.014199903,pos,ns,1.84771462,-0.000365367,0.000102268,-3.57263483,0.000409604,neg,ns,0.89865783,Dach1,Dach1_Intron,14,98019504,98019553,98019552,98019553,50,-,AGTGATTCAGACCTATAGCACATTTTTCGATGATATGTTTTATTACTTCG,"Intron (Dach1-201/Dach1, intron 1 of 10)",14,97786853,98169543,382691,2,Dach1-201,149990,Dach1-201;Dach1-202;Dach1-203,Dach1;Dach1;Dach1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,76,13134,ENSMUSG00000055639,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11901,cg07816130,-0.00000907,0.000003,-3.025100679,0.002693506,loss,ns,-0.00000835,0.0000051,-1.637674955,0.102504131,neg,ns,0.005221744,0.001492998,3.497488865,0.000538329,pos,ns,3.268952216,-0.000159958,0.0000513,-3.115418684,0.002008634,neg,ns,0.925570712,Csnk1a1,Csnk1a1_threeUTR,18,61580463,61580512,61580511,61580512,50,-,GACAAAACCAAGAGTAACATGAAAGGTTAGTAGCCAAGAACCAAGTGACG,3' UTR,18,61555274,61590061,34788,1,Csnk1a1-204,25189,Csnk1a1-204;Csnk1a1-206;Csnk1a1-201;Csnk1a1-207;Csnk1a1-202;Csnk1a1-210;Csnk1a1-208;Csnk1a1-203;Csnk1a1-209,Csnk1a1;Csnk1a1;Csnk1a1;Csnk1a1;Csnk1a1;Csnk1a1;Csnk1a1;Csnk1a1;Csnk1a1,0;0;0;0;0;0;0;0;-2332,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,9,93687,ENSMUSG00000024576,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24312,cg26560974,0.00000704,0.000012,0.588353727,0.55672329,gain,ns,0.0000333,0.0000203,1.637668539,0.102505471,pos,ns,0.003161293,0.005957016,0.530684027,0.596017716,pos,ns,0.224740831,0.000249013,0.000204861,1.215517819,0.225093529,pos,ns,0.840647357,Pou3f1,Pou3f1_Intron,4,124615754,124615803,124615754,124615755,50,-,CGGTGCATTAACCCTCTATTATAATGATGGACGACAGATAGGGGCGACGT,"Intron (Gm2164-201/Gm2164-201, intron 1 of 1)",4,124656807,124660655,3849,1,Pou3f1-201,-41053,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,43,85,18991,ENSMUSG00000090125,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11490,cg13132708,0.0000252,0.00000376,6.697170813,9.99E-11,gain,yes,-0.0000105,0.00000638,-1.637390815,0.102563488,neg,ns,-0.003478293,0.001869764,-1.860284722,0.06379211,neg,ns,1.195233036,0.0000991,0.0000643,1.540771402,0.124392548,pos,ns,0.905739922,Nptn,Nptn_Exon,9,58618630,58618679,58618678,58618679,50,+,CTGTCACTGCATTCCTGCTCCCCCTCCCTCTAGCTGGGTTTGTCAAGTCG,"Exon (Nptn-212/Nptn, exon 2 of 8)",9,58582240,58651318,69079,1,Nptn-212,36390,Nptn-212;Nptn-201;Nptn-213;Nptn-206;Nptn-203;Nptn-202;Nptn-211;Nptn-207;Nptn-204,Nptn;Nptn;Nptn;Nptn;Nptn;Nptn;Nptn;Nptn;Nptn,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,20,22,20320,ENSMUSG00000032336,conserved gene but different region,9,58618678,58618932,255,*,255,20,0.6,0.879917184,0.078431373,1.96E-13,CpGisland,TRUE,NA,NRS
23395,cg06235259,0.0000244,0.00000482,5.050496089,0.000000754,gain,yes,-0.0000134,0.00000819,-1.637255326,0.102591801,neg,ns,-0.0000553,0.002400103,-0.02302899,0.981641964,neg,ns,0.008046884,0.000158468,0.0000825,1.919907976,0.05578702,pos,ns,0.051140224,Sox21,Sox21_Intergenic_downstream,14,118232349,118232398,118232397,118232398,50,+,CTATTTCTCACATTTCCAAAACTTTTCATGGTTTTTAAAATATTATTCCG,Downstream (<1kb),14,118233232,118237030,3799,2,Sox21-201,4632,Sox21-201,Sox21,4632,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,26,27,223227,ENSMUSG00000061517,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
19087,cg05858495,-0.00000457,0.00000171,-2.682150662,0.007707148,loss,ns,0.00000474,0.0000029,1.637049993,0.102634722,pos,ns,0.00211383,0.000848949,2.48993707,0.013300248,pos,ns,1.876140256,-0.0000488,0.0000292,-1.671872493,0.095558474,neg,ns,0.062977887,Ppp1r1b,Ppp1r1b_Promoter,11,98339281,98339330,98339281,98339282,50,+,CGAGGAAGCTGGAGACCTGGCCCATTTTCATTCTGCATAAAATTTTAATG,Promoter (9-10kb),11,98348404,98357796,9393,1,Ppp1r1b-201,-9074,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,16,16,19049,ENSMUSG00000061718,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
10924,cg01063757,-0.00000647,0.00000121,-5.368992105,0.000000156,loss,yes,0.00000335,0.00000205,1.636834257,0.102679833,pos,ns,0.00126816,0.00060006,2.113388127,0.035366313,pos,ns,1.451410212,-0.0000421,0.0000206,-2.038608812,0.042337292,neg,ns,0.965485574,Tcf7l2,Tcf7l2_Intron,19,55888818,55888867,55888866,55888867,50,-,AGGATCTTCAGTGAGAGACATTATTCTTGGAATATCCAATTAATTCCACG,"Intron (Tcf7l2-213/Tcf7l2, intron 4 of 13)",19,55741820,55933229,191410,1,Tcf7l2-213,146998,Tcf7l2-213;Tcf7l2-201;Tcf7l2-208;Tcf7l2-211;Tcf7l2-212;Tcf7l2-206;Tcf7l2-204;Tcf7l2-205;Tcf7l2-222;Tcf7l2-215;Tcf7l2-214;Tcf7l2-207;Tcf7l2-202;Tcf7l2-209;Tcf7l2-210;Tcf7l2-217;Tcf7l2-220,Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,55,88,21416,ENSMUSG00000024985,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15633,cg02448386,0.00000989,0.00000763,1.295639071,0.196063765,gain,ns,-0.0000212,0.000013,-1.63667232,0.102713704,neg,ns,0.011431618,0.003799932,3.008374051,0.002841763,pos,ns,2.546412197,-0.000314559,0.000130679,-2.407104342,0.016663902,neg,ns,0.102934491,Nfib,Nfib_Intron,4,82464487,82464536,82464487,82464488,50,-,CGCCTGGGCCAGCTCCAATAACAACATCTGCTTGGCAGCTTTTCAAGCCC,"Intron (Nfib-201/Nfib, intron 2 of 11)",4,82290173,82505308,215136,2,Nfib-201,40772,Nfib-201;Nfib-203;Nfib-202;Nfib-205;Nfib-206;Nfib-204;Nfib-207;Nfib-209;Nfib-210,Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,66,18028,ENSMUSG00000008575,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20098,cg15909077,-0.00000588,0.00000194,-3.036607023,0.00259568,loss,ns,0.00000538,0.00000329,1.636471837,0.102755651,pos,ns,0.001827918,0.000963331,1.897496517,0.058691447,pos,ns,1.231425184,-0.0000599,0.0000331,-1.809109162,0.071402662,neg,ns,0.959471347,Atf7,Atf7_fiveUTR,15,102557523,102557572,102557571,102557572,50,+,GAAGAGTCCCACCTCCTCACAGTTCTTCAGGAATCTAGTTGGAGTAGGCG,5' UTR,15,102525946,102625073,99128,2,Atf7-211,67501,Atf7-211;Atf7-210;Atf7-209;Atf7-202;Atf7-203;Atf7-205;Atf7-204;Atf7-206;Atf7-208;Atf7-213;Gm28047-201,Atf7;Atf7;Atf7;Atf7;Atf7;Atf7;Atf7;Atf7;Atf7;Atf7;Gm28047,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,11,223922,ENSMUSG00000099083,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27935,cg01966519,-0.000205298,0.000128685,-1.595354902,0.111651826,loss,ns,-0.000357732,0.000218618,-1.636333158,0.102784675,neg,ns,0.0000312,0.064047778,0.000487039,0.999611712,pos,ns,0.000168664,-0.002892184,0.002202598,-1.313078501,0.19012763,neg,ns,0.610226831,Rps6kc1,Rps6kc1_Intergenic_downstream,1,190655717,190655766,190655765,190655766,50,+,ATTAAAAGCAAATAATCAAATACATTCAATTTGAAAAGTTGGCAAACTCG,Distal Intergenic,1,190808888,190810463,1576,2,Rps6kc1-207,154697,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,14,29,320119,ENSMUSG00000089872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20669,cg09571337,-0.0000426,0.0000111,-3.827302332,0.000156719,loss,ns,-0.000031,0.0000189,-1.636298804,0.102791866,neg,ns,-0.001162348,0.005542801,-0.209704111,0.834036365,neg,ns,0.078815013,-0.000185357,0.000190616,-0.972409559,0.331604966,neg,ns,0.761327511,Kansl1,Kansl1_Exon,11,104424801,104424850,104424849,104424850,50,+,TTTTCTAAGGAAAACTCCAAAACTGGCTGTCTCCCCAACAGCTCAGCTCG,"Exon (Kansl1-205/Kansl1, exon 2 of 14)",11,104333229,104442291,109063,2,Kansl1-205,17441,Kansl1-205;Kansl1-204;Kansl1-201;Kansl1-203;Kansl1-206,Kansl1;Kansl1;Kansl1;Kansl1;Kansl1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,11,76719,ENSMUSG00000018412,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
9600,cg03914207,-0.00000356,0.00000148,-2.404511075,0.016780363,loss,ns,0.00000412,0.00000252,1.636253503,0.102801348,pos,ns,0.001728448,0.000737458,2.343791354,0.019720258,pos,ns,1.705087398,-0.0000166,0.0000254,-0.653011928,0.514232581,neg,ns,0.958400836,Tenm3,Tenm3_Intron,8,49462713,49462762,49462761,49462762,50,-,AACTGATTGTTGATAAAACAATCGATTTGAGCATCTCATCTGTTTCACCG,"Intron (4930555F03Rik-205/4930555F03Rik-205, intron 6 of 9)",8,48646261,48843951,197691,2,Tenm3-207,-618811,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,39,23965,ENSMUSG00000031561,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2060,cg22354122,0.0000404,0.00000648,6.239778606,1.44E-09,gain,yes,-0.000018,0.000011,-1.63624195,0.102803767,neg,ns,0.010111098,0.003222732,3.137430623,0.00186808,pos,ns,2.728604567,-0.000389329,0.000110829,-3.512861674,0.000509253,neg,ns,0.134232823,Gm38154,Gm38154_Intergenic_downstream,3,17785632,17785681,17785632,17785633,50,+,CGCTGATTAATAAGTGTTTTTTGTTGTGAAGTGTTGAATAATAGAGGATG,Distal Intergenic,3,17670688,17671027,340,1,Gm38154-201,114944,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,15,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
10289,cg10141955,-0.00000718,0.00000294,-2.443918946,0.015085874,loss,ns,-0.00000817,0.00000499,-1.635881382,0.10287927,neg,ns,-0.0036714,0.00146279,-2.509861483,0.012587207,neg,ns,1.900070642,-0.0000318,0.0000503,-0.632324519,0.527640929,neg,ns,0.924112738,Lgi2,Lgi2_Exon,5,52538685,52538734,52538685,52538686,50,+,CGTATTTGTAAATGTGAGAGCCACCGAAGAGCTGGGCTACCACCACAAAG,"Exon (Lgi2-202/Lgi2, exon 8 of 8)",5,52533517,52566303,32787,2,Lgi2-202,27569,Lgi2-202;Lgi2-201,Lgi2;Lgi2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,246316,ENSMUSG00000039252,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16463,cg15547854,-0.000000248,0.000000554,-0.447982549,0.654478704,loss,ns,-0.00000154,0.000000942,-1.635679635,0.102921536,neg,ns,-0.000435189,0.000275958,-1.577014118,0.115812161,neg,ns,0.936245833,0.0000228,0.00000949,2.400958946,0.01694105,pos,ns,0.988265234,Tnpo2,Tnpo2_Exon,8,85054701,85054750,85054701,85054702,50,+,CGAGTCCCTCTGCCATTCCAGCCATCACCATCGGCCGCTTGGGCTACGTG,"Exon (Tnpo2-201/Tnpo2, exon 21 of 25)",8,85036915,85057580,20666,1,Tnpo2-201,17786,Tnpo2-201;Tnpo2-207;Tnpo2-202;Tnpo2-205;Tnpo2-204,Tnpo2;Tnpo2;Tnpo2;Tnpo2;Tnpo2,0;0;0;0;4493,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,212999,ENSMUSG00000031691,conserved gene and region,8,85054605,85054791,187,*,187,15,0.695187166,0.664534471,0.080213904,2.48E-10,CpGisland,TRUE,U10,Tr-S
23247,cg07254032,0.000106991,0.00000819,13.06665643,2.21E-31,gain,yes,-0.0000228,0.0000139,-1.635630797,0.102931769,neg,ns,0.014786867,0.004075316,3.628397313,0.000333415,pos,ns,3.477015494,-0.000289035,0.00014015,-2.062330747,0.040009184,neg,ns,0.143680809,Hcn1,Hcn1_Exon,13,117603026,117603075,117603026,117603027,50,-,CGGTGGAAAAGGAGCAGGAAAGGGTTAAAACTGCAGGCTTCTGGATTATC,Promoter (<=1kb),13,117602320,117660848,58529,1,Hcn1-202,706,Hcn1-202;Hcn1-201,Hcn1;Hcn1,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,15165,ENSMUSG00000021730,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
22291,cg22808911,-0.000000648,0.00000118,-0.54856571,0.583698368,loss,ns,0.00000328,0.00000201,1.635607994,0.102936548,pos,ns,0.001065924,0.000588041,1.812669192,0.070850071,pos,ns,1.149659713,-0.0000279,0.0000202,-1.378924062,0.168912278,neg,ns,0.973001254,Pacs2,Pacs2_Exon,12,113063373,113063422,113063373,113063374,50,+,CGCTACAACAACTTCTTCCAGGACCTGGCCTGGAGAGACCTGTTCAACAA,"Exon (Pacs2-207/Pacs2, exon 17 of 24)",12,113014508,113072138,57631,1,Pacs2-207,48865,Pacs2-207;Pacs2-201;Pacs2-202;Pacs2-203;Pacs2-205,Pacs2;Pacs2;Pacs2;Pacs2;Pacs2,0;0;0;0;-4380,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,217893,ENSMUSG00000021143,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2487,cg04844016,-0.00000393,0.00000249,-1.580609396,0.114987118,loss,ns,0.00000692,0.00000423,1.635575707,0.102943314,pos,ns,0.003809364,0.001238681,3.075337804,0.002289883,pos,ns,2.640186621,-0.000113978,0.0000426,-2.675663363,0.007854408,neg,ns,0.095061718,Spred2,Spred2_fiveUTR,11,19924903,19924952,19924903,19924904,50,-,CGGGACAGGCGTCTAGGTGAACAAGAAAATGACCGAAGAAACACACCCAG,Promoter (<=1kb),11,19924375,20024026,99652,1,Spred2-202,528,Spred2-202;Spred2-201,Spred2;Spred2,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,8,13,114716,ENSMUSG00000045671,conserved gene and region,11,19924842,19925248,407,*,407,39,0.683046683,0.873823287,0.095823096,3.68E-29,CpGisland,TRUE,U1,Pr-A
25095,cg18785333,0.000028,0.000006,4.66461695,0.0000046,gain,ns,0.0000167,0.0000102,1.635511313,0.102956809,pos,ns,0.00596936,0.002985983,1.999127526,0.046467225,pos,ns,1.332853263,0.000165501,0.000102688,1.611693007,0.108046372,pos,ns,0.17430732,Lrrn2,Lrrn2_Intron,1,132881572,132881621,132881620,132881621,50,-,TTGTGCTCTGTTCCTCAGGCTGCCGCAGCTCCCATCTGTTGGAGCCAACG,"Intron (Lrrn2-201/Lrrn2, intron 1 of 1)",1,132880273,132940005,59733,1,Lrrn2-201,1299,Lrrn2-201;Lrrn2-202,Lrrn2;Lrrn2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,16980,ENSMUSG00000026443,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
2622,cg16791392,0.000000773,0.00000613,0.126003654,0.899810713,gain,ns,-0.000017,0.0000104,-1.635306055,0.102999837,neg,ns,-0.002167392,0.003051472,-0.710277458,0.478066068,neg,ns,0.320512081,-0.0000057,0.00010494,-0.054271525,0.956753794,neg,ns,0.880777992,Zswim8,Zswim8_Exon,14,20722960,20723009,20722960,20722961,50,+,CGGCCTTCCACCAACTGGTGCAGCGCTGCCAGCAGGCATACATGCAGGTG,"Exon (Zswim8-201/Zswim8, exon 25 of 26)",14,20707552,20723619,16068,1,Zswim8-201,15408,Ndst2-202;Ndst2-205;Ndst2-201;Ndst2-204;Ndst2-207;Zswim8-201;Zswim8-208;Zswim8-204;Zswim8-203;Zswim8-209;Zswim8-207;Zswim8-202;Zswim8-210;Zswim8-214,Ndst2;Ndst2;Ndst2;Ndst2;Ndst2;Zswim8;Zswim8;Zswim8;Zswim8;Zswim8;Zswim8;Zswim8;Zswim8;Zswim8,0;0;0;0;0;0;0;0;0;0;4359;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,13,14,268721,ENSMUSG00000021819,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
75,cg00894554,0.0000315,0.00000849,3.70586133,0.000249444,gain,ns,-0.0000236,0.0000144,-1.635281966,0.103004887,neg,ns,-0.006330737,0.004224057,-1.498733759,0.134960325,neg,ns,0.869793885,0.000448185,0.000145265,3.085289725,0.002216853,pos,ns,0.164443234,Plag1,Plag1_Intron,4,3937200,3937249,3937200,3937201,50,-,CGTTTTCTCATTGTCGGTTGAGTTATAAAAGGCTTTTGCCCTTCGAAAGT,"Intron (Plag1-201/Plag1, intron 1 of 5)",4,3900996,3938382,37387,2,Plag1-201,1133,Chchd7-202;Chchd7-206;Chchd7-213;Chchd7-207;Chchd7-208;Chchd7-201;Chchd7-205;Chchd7-214;Chchd7-203;Chchd7-209;Chchd7-210;Chchd7-211;Chchd7-204;Plag1-201;Plag1-202;Plag1-204;Plag1-203,Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Plag1;Plag1;Plag1;Plag1,-1639;-1639;-1641;-1665;-1665;-1665;-1665;-1665;-1671;-1794;-2173;-2251;-3605;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,22,56711,ENSMUSG00000003282,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
11327,cg10588125,0.0000353,0.0000073,4.841298071,0.00000204,gain,ns,0.0000203,0.0000124,1.635170583,0.103028243,pos,ns,0.005697879,0.003633909,1.567975127,0.117907086,pos,ns,0.928460094,-0.000104488,0.00012497,-0.836102626,0.403741166,neg,ns,0.2374381,Spock1,Spock1_Intron,13,57624169,57624218,57624217,57624218,50,+,CACCATCACCAGTTCTCTGAGCTGAGGATAATGTATGATAATCTAAATCG,"Intron (Spock1-205/Spock1, intron 3 of 9)",13,57421195,57908314,487120,2,Spock1-205,284096,Spock1-205;Spock1-206;Spock1-202;Spock1-204;Spock1-201;Spock1-203,Spock1;Spock1;Spock1;Spock1;Spock1;Spock1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,20745,ENSMUSG00000056222,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20859,cg27597956,0.000059,0.00000399,14.79075943,7.96E-38,gain,yes,-0.0000111,0.00000678,-1.635031169,0.103057482,neg,ns,0.005208958,0.00198593,2.622931231,0.009148562,pos,ns,2.038647148,0.0000303,0.0000683,0.44328911,0.657865834,pos,ns,0.099031708,Pax6,Pax6_fiveUTR,2,105668893,105668942,105668941,105668942,50,-,AGCACCCTCTTTTCTTATCATTGACATTTAAACTCTGGGGCAGGTCCTCG,Promoter (<=1kb),2,105668900,105697364,28465,1,Pax6-206,0,Pax6-206;Pax6-207;Pax6-210;Pax6-214;Pax6-208,Pax6;Pax6;Pax6;Pax6;Pax6,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,15,78,18508,ENSMUSG00000027168,mapped to different genes,2,105668770,105669154,385,*,385,27,0.594805195,0.805813954,0.07012987,1.13E-16,CpGisland,TRUE,NA,NRS
24854,cg01154505,-0.0000269,0.0000163,-1.648208149,0.10032305,loss,ns,-0.0000453,0.0000277,-1.635020734,0.103059671,neg,ns,-0.012459286,0.008112133,-1.535882948,0.125587069,neg,ns,0.901055073,-0.0000155,0.000278976,-0.055451557,0.955814443,neg,ns,0.37142186,Fbln7,Fbln7_Exon,2,128893808,128893857,128893808,128893809,50,+,CGGCTCTGCATGCACGCCTGCGTGAACACCCCGGGCTCTTACCGTTGCAC,"Exon (Fbln7-202/Fbln7, exon 7 of 9)",2,128862981,128897034,34054,1,Fbln7-202,30827,Fbln7-202;Fbln7-201,Fbln7;Fbln7,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,70370,ENSMUSG00000027386,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6181,cg17421077,0.00000378,0.00000379,0.999249684,0.318453089,gain,ns,-0.0000105,0.00000643,-1.634910512,0.103082793,neg,ns,-0.002083166,0.001884283,-1.105548531,0.269779234,neg,ns,0.568991483,0.0000166,0.0000648,0.255456579,0.798539885,pos,ns,0.911494332,Tenm2,Tenm2_Intron,11,36267578,36267627,36267626,36267627,50,-,GCACCCCAAATTACCACACTTTTAACATCCTGACATGTTGATGGCCCGCG,"Intron (Tenm2-202/Tenm2, intron 7 of 30)",11,36006656,37235882,1229227,2,Tenm2-202,968255,Tenm2-202;Tenm2-208;Tenm2-201;Tenm2-204;Tenm2-205;Tenm2-206,Tenm2;Tenm2;Tenm2;Tenm2;Tenm2;Tenm2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,47,84,23964,ENSMUSG00000049336,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5981,cg24677671,-0.0000279,0.00000402,-6.950126044,2.16E-11,loss,yes,-0.0000112,0.00000683,-1.634732632,0.103120116,neg,ns,0.002598844,0.002000848,1.298871492,0.194953313,pos,ns,0.710069381,-0.000324461,0.0000688,-4.715380953,0.00000365,neg,ns,0.915881501,Gtf2h4,Gtf2h4_Exon,17,35672725,35672774,35672725,35672726,50,+,CGGTCCAATACCCCAGGGCTCAGGCCCCCTAAGAATTCCTGCAGATTCCT,Promoter (<=1kb),17,35667730,35673739,6010,2,Gtf2h4-201,965,Gtf2h4-201;Gtf2h4-212;Gtf2h4-205;Gtf2h4-207;Gtf2h4-208;Gtf2h4-211;Gtf2h4-204;Gtf2h4-209;Gtf2h4-202;Gtf2h4-210;Gtf2h4-206;Gtf2h4-203,Gtf2h4;Gtf2h4;Gtf2h4;Gtf2h4;Gtf2h4;Gtf2h4;Gtf2h4;Gtf2h4;Gtf2h4;Gtf2h4;Gtf2h4;Gtf2h4,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,14885,ENSMUSG00000001524,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2930,cg24232289,0.0000101,0.00000384,2.642966816,0.008635866,gain,ns,-0.0000107,0.00000652,-1.63466596,0.103134108,neg,ns,-0.00249869,0.001909076,-1.308847614,0.191555396,neg,ns,0.71770561,0.000152409,0.0000657,2.321436915,0.020911353,pos,ns,0.91595628,Ehbp1,Ehbp1_Exon,11,22068394,22068443,22068442,22068443,50,-,GCAGCCATTTCACCATAGCTGGGAAGTTCTGACATCTTCACTCCAGATCG,"Exon (Ehbp1-201/Ehbp1, exon 15 of 24)",11,22005828,22285838,280011,2,Ehbp1-201,217395,Ehbp1-201;Ehbp1-202;Ehbp1-207,Ehbp1;Ehbp1;Ehbp1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,11,45,216565,ENSMUSG00000042302,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10481,cg25581768,0.0000112,0.0000119,0.939874358,0.348013769,gain,ns,0.0000331,0.0000202,1.634623385,0.103143044,pos,ns,0.002896906,0.005924946,0.488933693,0.625234368,pos,ns,0.203957157,-0.00010015,0.000203758,-0.491515825,0.623409484,neg,ns,0.732314568,Npas3,Npas3_Intron,12,53837501,53837550,53837501,53837502,50,+,CGAAAATGACTGCATGATGCATCATTTGACTGCATGCTGTCCGAGTGCTT,"Intron (Npas3-204/Npas3, intron 4 of 10)",12,53248157,54069532,821376,1,Npas3-204,589344,Npas3-204;Npas3-201;Npas3-203,Npas3;Npas3;Npas3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,83,103,27386,ENSMUSG00000021010,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24669,cg10076652,0.00000203,0.00000182,1.118671529,0.264146385,gain,ns,-0.00000505,0.00000309,-1.634388361,0.103192383,neg,ns,-0.00117877,0.000904942,-1.302590931,0.193681296,neg,ns,0.712912317,0.00000508,0.0000311,0.163173263,0.870488338,pos,ns,0.959256265,Gm42715,Gm42715_Exon,7,127552684,127552733,127552684,127552685,50,+,CGACTGGAATCCCACCATGGATGCTCAGGCCCAGGACCGCTGTCACCGAA,"Exon (Srcap-207/Srcap, exon 29 of 34)",7,127519584,127567054,47471,1,Gm42715-201,33100,Gm42715-201;Srcap-207;Srcap-206;Srcap-214,Gm42715;Srcap;Srcap;Srcap,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,7,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26233,cg13834031,-0.00000148,0.00000134,-1.105946294,0.269607293,loss,ns,0.00000373,0.00000228,1.634257539,0.103219855,pos,ns,0.001769123,0.000668156,2.647767223,0.008516925,pos,ns,2.069717171,-0.0000362,0.000023,-1.575652506,0.116125842,neg,ns,0.042047599,Dhrs3,Dhrs3_fiveUTR,4,144892823,144892872,144892823,144892824,50,+,CGCGTTTAAGCAATTTCCTGAGCCCAAGAATAGCAATGAGTCGGGAGACT,Promoter (<=1kb),4,144892827,144927642,34816,1,Dhrs3-202,0,Dhrs3-202;Dhrs3-207;Dhrs3-206;Dhrs3-203;Dhrs3-205;Dhrs3-201,Dhrs3;Dhrs3;Dhrs3;Dhrs3;Dhrs3;Dhrs3,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,5,20148,ENSMUSG00000066026,conserved gene and region,4,144892683,144892878,196,*,196,18,0.62244898,0.954545455,0.091836735,2.31E-13,CpGisland,TRUE,U1,Pr-A
22579,cg26195077,-0.0000169,0.00000272,-6.196683765,1.83E-09,loss,yes,0.00000756,0.00000462,1.634157707,0.103240823,pos,ns,0.001313609,0.001354825,0.969578643,0.333012424,pos,ns,0.477539563,-0.0000781,0.0000466,-1.676573336,0.094634035,neg,ns,0.933792234,Rpl19-ps10,Rpl19-ps10_Intergenic_downstream,7,115294586,115294635,115294586,115294587,50,-,CGGTATTTCAGTGCCAATATAATTAGATTGTAACAAGCAAAGCCCTGTAA,Distal Intergenic,7,115172056,115172385,330,1,Rpl19-ps10-201,122579,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,29,668472,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2941,cg00660874,-0.00000457,0.0000043,-1.061910377,0.289102938,loss,ns,-0.000012,0.00000731,-1.634138096,0.103244943,neg,ns,-0.006554291,0.002142385,-3.059343191,0.002411909,neg,ns,2.61763904,0.000122136,0.0000737,1.657736844,0.098382144,pos,ns,0.876171294,Igf2bp2,Igf2bp2_Exon,16,22081729,22081778,22081729,22081730,50,-,CGTACCGGGACTGGGTCTGCTTAGTGATGTTCTTTATGGTCAAGCCCTCC,"Exon (Igf2bp2-201/Igf2bp2, exon 6 of 16)",16,22059009,22163299,104291,2,Igf2bp2-201,81521,Igf2bp2-201;Igf2bp2-206;Igf2bp2-207;Igf2bp2-210;Igf2bp2-202;Igf2bp2-208;Igf2bp2-209,Igf2bp2;Igf2bp2;Igf2bp2;Igf2bp2;Igf2bp2;Igf2bp2;Igf2bp2,0;0;0;0;0;-2611;55431,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,5,319765,ENSMUSG00000033581,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9008,cg08382193,-0.0000408,0.0000132,-3.083028811,0.002233254,loss,ns,0.0000367,0.0000225,1.633797204,0.10331657,pos,ns,0.006632132,0.00658298,1.007466432,0.3144964,pos,ns,0.502384321,-0.000403136,0.000226388,-1.780731244,0.075935561,neg,ns,0.338700189,4931429L15Rik,4931429L15Rik_Intergenic_upstream,9,46510453,46510502,46510501,46510502,50,-,CTAATCAGTTAATACTGATAAACTGCCAGCAATAACTGCCAATTGCGCCG,Distal Intergenic,9,46303361,46319986,16626,2,4931429L15Rik-201,-190516,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,12,22,74361,ENSMUSG00000056617,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21866,cg01203708,-0.0000184,0.00000672,-2.742823744,0.006445652,loss,ns,-0.0000187,0.0000114,-1.633623517,0.103353079,neg,ns,-0.003771886,0.003345078,-1.12759296,0.260363845,neg,ns,0.584419323,-0.0000338,0.000115037,-0.293567035,0.769285207,neg,ns,0.91099212,Kif18a,Kif18a_Exon,2,109296662,109296711,109296662,109296663,50,+,CGCTTGTTAAAGGATTCTCTTGGAGGAAACTGTCAAACTATAATGATAGC,"Exon (Kif18a-201/Kif18a, exon 7 of 17)",2,109280738,109341747,61010,1,Kif18a-201,15924,Kif18a-201;Kif18a-202;Kif18a-204;Kif18a-203;Kif18a-205;Kif18a-206,Kif18a;Kif18a;Kif18a;Kif18a;Kif18a;Kif18a,0;15836;0;0;15793;4639,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,228421,ENSMUSG00000027115,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5287,cg18560297,-0.0000228,0.00000769,-2.963593479,0.003276283,loss,ns,0.0000213,0.0000131,1.633448181,0.103389946,pos,ns,0.005165071,0.003825945,1.350011864,0.177997052,pos,ns,0.749587191,-0.000229389,0.000131574,-1.743422957,0.08225115,neg,ns,0.849149078,Ranbp17,Ranbp17_Intron,11,33301329,33301378,33301377,33301378,50,-,TATTTGCAAATACCGTTAAAGTGTAATCAAGCAGTCACTTTCCAGGGTCG,"Intron (Ranbp17-202/Ranbp17, intron 19 of 27)",11,33211795,33513746,301952,2,Ranbp17-202,212368,Ranbp17-202;Ranbp17-206;Ranbp17-203;Ranbp17-205,Ranbp17;Ranbp17;Ranbp17;Ranbp17,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,31,66011,ENSMUSG00000040594,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8995,cg15186385,-0.00000384,0.00000124,-3.099834807,0.002113969,loss,ns,0.00000344,0.00000211,1.633410381,0.103397896,pos,ns,0.00104635,0.000616752,1.696549375,0.090785702,pos,ns,1.041982545,-0.0000105,0.0000212,-0.495697756,0.620458892,neg,ns,0.045678359,Trim8,Trim8_Exon,19,46502641,46502690,46502689,46502690,50,+,GAAGAACCTGAAGCTCACCAACATCGTGGAGAAGTTCAATGCCCTGCACG,Promoter (<=1kb),19,46501702,46516848,15147,1,Trim8-201,939,Trim8-201,Trim8,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,15,21,93679,ENSMUSG00000025034,conserved gene and region,19,46502503,46503142,640,*,640,53,0.6359375,0.821705426,0.0828125,6.38E-36,CpGisland,TRUE,U1,Pr-A
21946,cg06792381,-0.0000314,0.00000754,-4.170301555,0.0000395,loss,ns,-0.0000209,0.0000128,-1.633192656,0.103443693,neg,ns,0.015416265,0.003750387,4.110580045,0.0000506,pos,ns,4.295977866,-0.00041358,0.000128975,-3.206654835,0.001483079,neg,ns,0.922614916,Ap1g1,Ap1g1_Exon,8,109803001,109803050,109803001,109803002,50,-,CGAACCCAAGCTGAAGAACGAGAAATGATCCAGAAAGAATGTGCTGCAAT,"Exon (Ap1g1-202/Ap1g1, exon 2 of 24)",8,109778554,109864204,85651,1,Ap1g1-202,24447,Ap1g1-202;Ap1g1-204;Ap1g1-201,Ap1g1;Ap1g1;Ap1g1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,11,16,11765,ENSMUSG00000031731,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27542,cg09623277,0.00000744,0.00000407,1.828352262,0.068457529,gain,ns,-0.0000113,0.00000692,-1.633151787,0.103452291,neg,ns,0.003510115,0.002026504,1.732103132,0.084249892,pos,ns,1.074430646,-0.000143857,0.0000697,-2.064196655,0.039830782,neg,ns,0.90997859,Gm11011,Gm11011_Intergenic_downstream,2,169445424,169445473,169445424,169445425,50,-,CGGCTGACGAAAAGCAGCATTAATTAAGTCATTGCCGGACTGTAATTGTG,Distal Intergenic,2,169582845,169587745,4901,2,Gm11011-201,142321,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,10,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2269,cg06778664,0.00000655,0.00000437,1.4984403,0.135036474,gain,ns,-0.0000121,0.00000743,-1.632990442,0.103486241,neg,ns,-0.007401892,0.002175807,-3.401906564,0.000756953,neg,ns,3.120930932,0.000153812,0.0000748,2.055603743,0.040658028,pos,ns,0.076793209,Meis1,Meis1_Intergenic_downstream,11,18878347,18878396,18878395,18878396,50,+,TCTAAATGAATTTTAATGCTAAACGAGGGTAATTCCCCATTTGTAGCGCG,Downstream (1-2kb),11,18880668,19012002,131335,2,Meis1-203,133606,Meis1-206;Meis1-202;Meis1-209;Meis1-201;Meis1-203;Meis1-208;Meis1-207,Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1,0;0;0;0;0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,17,88,17268,ENSMUSG00000020160,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
9246,cg27317479,0.00000197,0.00000143,1.373381238,0.170626303,gain,ns,0.00000398,0.00000243,1.632889956,0.103507391,pos,ns,0.002880197,0.000713222,4.038291894,0.0000679,pos,ns,4.167979287,-0.000084,0.0000245,-3.422882934,0.000702857,neg,ns,0.959892311,Cadm1,Cadm1_Intron,9,47846773,47846822,47846773,47846774,50,+,CGTTGTATCAGGTTTCGGCTCAAAAGAGCACCATTACCTTTAGCTGTCAC,"Intron (Cadm1-204/Cadm1, intron 8 of 9)",9,47530173,47853385,323213,1,Cadm1-204,316600,Cadm1-204;Cadm1-209;Cadm1-206;Cadm1-202;Cadm1-203;Cadm1-201,Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,77,54725,ENSMUSG00000032076,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24121,cg02820423,0.000088,0.0000141,6.25612303,1.31E-09,gain,yes,0.000039,0.0000239,1.63269969,0.103547445,pos,ns,0.016266848,0.007003877,2.322549057,0.020850639,pos,ns,1.680880626,-0.000293196,0.000240863,-1.21727326,0.224426091,neg,ns,0.479096096,Galnt2l,Galnt2l_Intron,8,122742661,122742710,122742709,122742710,50,-,AGCGAGGTAGAATGCTTGGGCTAATTATGCATTCAAACGAGCAGGCTGCG,"Intron (Galnt2l-201/Galnt2l, intron 1 of 15)",8,119910841,124345722,4434882,1,Galnt2l-201,2831820,Galnt2l-201,Galnt2l,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,28,,NA,mapped to different genes,8,122742642,122742867,226,*,226,16,0.566371681,0.884756545,0.07079646,3.66E-10,CpGisland,TRUE,U13,Hc-P
3790,cg04634493,0.00000807,0.00000491,1.642936916,0.101409858,gain,ns,-0.0000136,0.00000835,-1.632615493,0.103565174,neg,ns,0.006553688,0.002445926,2.679430323,0.007768593,pos,ns,2.109657606,-0.000284791,0.0000841,-3.385721524,0.000801322,neg,ns,0.034030763,Zmiz1,Zmiz1_Exon,14,25459169,25459218,25459169,25459170,50,-,CGGCGGCGCGGGGCCCTTTGGAAATAGAATAGCCAATGTAATCTGACACT,Promoter (<=1kb),14,25459185,25538492,79308,1,Zmiz1-206,0,Zmiz1-206;Zmiz1-208;Zmiz1-201;Zmiz1-202,Zmiz1;Zmiz1;Zmiz1;Zmiz1,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,15,328365,ENSMUSG00000007817,conserved gene but different region,14,25458848,25459178,331,*,331,32,0.628398792,1.139537386,0.096676737,3.78E-24,CpGisland,TRUE,NA,NRS
2154,cg25363406,-0.00000335,0.00000804,-0.417282551,0.676760584,loss,ns,0.0000223,0.0000137,1.632434092,0.103603378,pos,ns,-0.00230947,0.004000619,-0.577278167,0.564170563,neg,ns,0.248589578,0.0000902,0.000137581,0.65582857,0.512420869,pos,ns,0.754128886,Pou6f2,Pou6f2_threeUTR,13,18125475,18125524,18125475,18125476,50,-,CGGGCCTCAGCCTCAGCCATCCACCGCTCAAGCACCGGCTTGATCTTCTG,3' UTR,13,18121098,18382041,260944,2,Pou6f2-201,256517,Pou6f2-201;Pou6f2-202;Pou6f2-204,Pou6f2;Pou6f2;Pou6f2,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,7,18,218030,ENSMUSG00000009734,conserved gene and region,13,18125393,18125511,119,*,119,9,0.588235294,0.885856079,0.075630252,0.00000392,CpGisland,TRUE,U15,NS
851,cg25483161,-0.00000112,0.00000566,-0.198737497,0.842598367,loss,ns,0.0000157,0.00000962,1.632419775,0.103606394,pos,ns,0.000694405,0.002817278,0.246480726,0.805473255,pos,ns,0.093948875,-0.000143733,0.0000969,-1.483524641,0.13895104,neg,ns,0.704829393,Rps18-ps2,Rps18-ps2_Intergenic_downstream,4,9019845,9019894,9019845,9019846,50,+,CGTGGGTATTTTGAAGGAAATTAAATCCATGTGTCTCTGATTCGGTTGCC,Distal Intergenic,4,8941259,8941656,398,1,Rps18-ps2-201,78586,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,3,666782,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3605,cg01907708,0.000000663,0.0000193,0.034415844,0.972567699,gain,ns,0.0000534,0.0000327,1.632364675,0.103618001,pos,ns,-0.006930399,0.009581804,-0.723287508,0.470048645,neg,ns,0.327857195,-0.000270574,0.000329517,-0.821121175,0.412208254,neg,ns,0.832830754,Gm12067,Gm12067_Intron,11,24700192,24700241,24700240,24700241,50,+,GAATTTTACTCCTGCATGTTCATTTAAGACTTAGACTTGACATATTAACG,"Intron (Gm12068-201/Gm12068-201, intron 2 of 3)",11,24552438,24553962,1525,2,Gm12067-201,-146230,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,58,100417843,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3798,cg11200746,-0.0000214,0.0000126,-1.702626964,0.089640291,loss,ns,0.0000348,0.0000213,1.632299308,0.103631772,pos,ns,0.008180639,0.006248276,1.309263421,0.191414726,pos,ns,0.718024653,-0.00053849,0.000214878,-2.506029209,0.012721652,neg,ns,0.736480853,5730522E02Rik,5730522E02Rik_Intergenic_downstream,11,25470313,25470362,25470361,25470362,50,+,AGGGCTAGATTTGCTCTTGGCTTTTAGCTTCGGTTAAAATGTCACACTCG,Distal Intergenic,11,25602816,25620098,17283,2,5730522E02Rik-205,149736,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,21,90,70626,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24268,cg21253032,-0.0000158,0.00000734,-2.157688754,0.03171994,loss,ns,-0.0000204,0.0000125,-1.632153836,0.103662425,neg,ns,-0.008246589,0.003654764,-2.256394271,0.024742325,neg,ns,1.606559494,-0.0000354,0.000125687,-0.281305973,0.778663403,neg,ns,0.852946374,Clstn3,Clstn3_Exon,6,124449797,124449846,124449797,124449798,50,+,CGAAATCCCTATAGTCCAGCCCCTCCCGACATGCATAGAGGCACTCGATG,"Exon (Clstn3-202/Clstn3, exon 11 of 18)",6,124430759,124462744,31986,2,Clstn3-202,12898,Clstn3-202;Clstn3-201;Clstn3-205,Clstn3;Clstn3;Clstn3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,6,232370,ENSMUSG00000008153,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25485,cg16007321,0.000000987,0.00000245,0.402392141,0.687672774,gain,ns,-0.0000068,0.00000417,-1.632139744,0.103665395,neg,ns,0.001504553,0.001220274,1.232963588,0.218523507,pos,ns,0.660501839,-0.0000435,0.000042,-1.037477421,0.300321973,neg,ns,0.962811361,Nr5a2,Nr5a2_Intron,1,136854380,136854429,136854380,136854381,50,+,CGTTATCATATGAAAGAGAATTAAACAGGCAGATCCAAGTGGGGATATAT,"Intron (Nr5a2-201/Nr5a2, intron 8 of 8)",1,136842571,136960448,117878,2,Nr5a2-201,106019,Nr5a2-201;Nr5a2-202;Nr5a2-203;Nr5a2-205,Nr5a2;Nr5a2;Nr5a2;Nr5a2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,5,26424,ENSMUSG00000026398,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
495,cg15693636,-0.00000363,0.0000027,-1.342466014,0.180427185,loss,ns,0.00000749,0.00000459,1.631833551,0.103729938,pos,ns,0.001454406,0.00134512,1.081246015,0.2804281,pos,ns,0.552178471,-0.0000763,0.0000463,-1.649200117,0.100119576,neg,ns,0.928711741,Celf2,Celf2_threeUTR,2,6553935,6553984,6553935,6553936,50,-,CGCCAAGTCCTCCATTCAGAGCCGCCATACCTGAGAGCATTTGAGCAACT,3' UTR,2,6539694,7396000,856307,2,Celf2-201,842016,Celf2-201;Celf2-202;Celf2-204;Celf2-214;Celf2-206;Celf2-226;Celf2-223;Celf2-224;Celf2-221;Celf2-205;Celf2-211;Celf2-213;Celf2-225;Celf2-228;Celf2-216;Celf2-217,Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,24,14007,ENSMUSG00000002107,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26693,cg11856201,0.000014,0.00000984,1.420791726,0.15638237,gain,ns,0.0000273,0.0000167,1.631832527,0.103730154,pos,ns,0.004432714,0.004895279,0.905508099,0.365899496,pos,ns,0.436638189,0.000111793,0.000168348,0.66405804,0.507146756,pos,ns,0.78960851,Camta1,Camta1_Intron,4,151186864,151186913,151186912,151186913,50,-,AGTTCTGCTGACATTCATCAAGTGCTCTCAAGGTTTACATAAACAGAACG,"Intron (Camta1-211/Camta1, intron 6 of 24)",4,150917322,151861669,944348,2,Camta1-211,674756,Camta1-211;Camta1-202;Camta1-201,Camta1;Camta1;Camta1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,22,100072,ENSMUSG00000014592,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2215,cg14431689,-0.0000146,0.00000518,-2.817927607,0.005143989,loss,ns,-0.0000144,0.00000881,-1.631831422,0.103730387,neg,ns,-0.007898924,0.002580512,-3.060991245,0.002399065,neg,ns,2.619957977,0.00000185,0.0000887,0.020791296,0.983425517,pos,ns,0.853807531,Arfgef3,Arfgef3_Exon,10,18627628,18627677,18627628,18627629,50,-,CGTGTGGCCAGCAGTCCGGGTTGTGGCTTCCCATCTCCAGGCCTACGCTG,"Exon (Arfgef3-202/Arfgef3, exon 18 of 34)",10,18581839,18743949,162111,2,Arfgef3-202,116272,Arfgef3-202;Arfgef3-201,Arfgef3;Arfgef3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,215821,ENSMUSG00000019852,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26566,cg22903204,0.0000636,0.0000147,4.327362452,0.0000204,gain,ns,-0.0000408,0.000025,-1.631822489,0.10373227,neg,ns,-0.004114096,0.007318213,-0.562172232,0.574404933,neg,ns,0.240781839,0.000284689,0.000251673,1.131189238,0.258849785,pos,ns,0.794909992,Casz1,Casz1_Intron,4,148921937,148921986,148921985,148921986,50,-,AAGATGAAATGCTCCCAAATCAATAGATATAATGAAATTCAAATAATCCG,"Intron (Casz1-201/Casz1, intron 4 of 15)",4,148804429,148945129,140701,1,Casz1-201,117508,Casz1-201;Casz1-202;Casz1-206,Casz1;Casz1;Casz1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,94,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25984,cg08256323,0.00000189,0.00000505,0.374470977,0.70830997,gain,ns,0.000014,0.00000858,1.6317727,0.103742769,pos,ns,0.006799506,0.002514934,2.703652269,0.007236674,pos,ns,2.140460991,-0.000205249,0.0000865,-2.37314474,0.018246893,neg,ns,0.590314129,Tmem164,Tmem164_Exon,X,142805989,142806038,142806037,142806038,50,+,GCTCCCCTTTGAATTGGAGATTTACTACATTCAGCATGTTATGCTCTACG,"Exon (Tmem164-204/Tmem164, exon 4 of 7)",20,142681406,142843494,162089,1,Tmem164-204,124583,Tmem164-204;Tmem164-202;Tmem164-205;Tmem164-201;Tmem164-206;Tmem164-208;Tmem164-209,Tmem164;Tmem164;Tmem164;Tmem164;Tmem164;Tmem164;Tmem164,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,15,209497,ENSMUSG00000047045,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11630,cg26880891,-0.0000024,0.0000011,-2.180623174,0.029962874,loss,ns,0.00000304,0.00000187,1.631767988,0.103743762,pos,ns,0.000437302,0.000546645,0.799974263,0.424338295,pos,ns,0.372287773,-0.00000601,0.0000188,-0.319832026,0.749311112,neg,ns,0.035766907,Arih1,Arih1_Exon,9,59486188,59486237,59486188,59486189,50,-,CGCCCAGCCCGGGCTCCACCAGCTCCACCTCGCCCAGATCCAGGGTATCA,Promoter (<=1kb),9,59388258,59486614,98357,2,Arih1-207,377,Arih1-207;Arih1-201;Arih1-202;Arih1-204;Arih1-205,Arih1;Arih1;Arih1;Arih1;Arih1,0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,13,23806,ENSMUSG00000025234,conserved gene and region,9,59485719,59487038,1320,*,1320,164,0.721212121,0.9609375,0.124242424,3.88E-141,CpGisland,TRUE,U1,Pr-A
13911,cg20485630,0.00000433,0.0000138,0.312654545,0.754753352,gain,ns,0.0000384,0.0000235,1.631501815,0.103799902,pos,ns,0.011478639,0.006892409,1.665402927,0.096842605,pos,ns,1.013933535,0.0000562,0.000237029,0.23689186,0.812897148,pos,ns,0.873705898,Trpv3,Trpv3_Exon,11,73295265,73295314,73295265,73295266,50,-,CGCAGTGCTGGAACTCTTCAAGCTCACCATAGGCCTGGGTGACCTGAACA,"Exon (Trpv3-201/Trpv3, exon 15 of 18)",11,73267388,73300363,32976,1,Trpv3-201,27877,Trpv3-201,Trpv3,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,246788,ENSMUSG00000043029,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25747,cg03471163,-0.00000294,0.00000458,-0.641938704,0.521387377,loss,ns,0.0000127,0.00000779,1.631451929,0.103810426,pos,ns,0.002041574,0.002281307,0.894914218,0.371527254,pos,ns,0.430009322,-0.000102583,0.0000785,-1.307553589,0.19199366,neg,ns,0.887223935,Rergl,Rergl_Intergenic_downstream,6,139293892,139293941,139293940,139293941,50,+,CCACAGACTGTGTGGTTTACTAATTAGTTTATTATACAGACACCTTGACG,Distal Intergenic,6,139492973,139501976,9004,2,Rergl-201,208035,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,5,632971,ENSMUSG00000092164,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12949,cg23040979,-0.00000577,0.00000323,-1.789059486,0.07458144,loss,ns,0.00000894,0.00000548,1.63138837,0.103823836,pos,ns,0.002000072,0.001605394,1.245844822,0.213762109,pos,ns,0.670069274,-0.0000641,0.0000552,-1.160633952,0.246683791,neg,ns,0.913596734,Fmr1,Fmr1_Exon,X,68710620,68710669,68710668,68710669,50,-,GATGAGCAGTTGCGACAGATTGGAGCTAGTTCTAGACCACCACCAAATCG,"Exon (Fmr1-201/Fmr1, exon 14 of 17)",20,68678541,68717963,39423,1,Fmr1-201,32079,Fmr1-201;Fmr1-212;Fmr1-213;Fmr1-205;Fmr1-203;Fmr1-204;Fmr1-206;Fmr1-202;Fmr1-211;Fmr1-208,Fmr1;Fmr1;Fmr1;Fmr1;Fmr1;Fmr1;Fmr1;Fmr1;Fmr1;Fmr1,0;32038;32038;0;0;0;0;0;15822;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,8,14265,ENSMUSG00000000838,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4780,cg06772109,0.0000907,0.00000764,11.86456939,5.06E-27,gain,yes,-0.0000212,0.000013,-1.631270021,0.10384881,neg,ns,0.001375359,0.003803494,0.361604101,0.717894238,pos,ns,0.143939532,0.000236285,0.000130802,1.806437779,0.071819643,pos,ns,0.191958093,Mecom,Mecom_Intron,3,30514107,30514156,30514155,30514156,50,-,CCTTTCAGGGAGGTAATCAATCAAGTGATCAACAGGGATATTTATCATCG,"Intron (Mecom-208/Mecom, intron 2 of 8)",3,29977344,30548008,570665,2,Mecom-208,33852,Mecom-212;Mecom-213;Mecom-207;Mecom-208;Mecom-211;Mecom-209,Mecom;Mecom;Mecom;Mecom;Mecom;Mecom,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,80,14013,ENSMUSG00000027684,conserved gene but different region,3,30514155,30514288,134,*,134,12,0.582089552,1.148571429,0.089552239,6.76E-09,CpGisland,TRUE,NA,NRS
22466,cg23789303,-0.00000294,0.00000251,-1.173357786,0.241553094,loss,ns,0.00000695,0.00000426,1.631134621,0.103877388,pos,ns,0.002561839,0.001247564,2.053473606,0.040865347,pos,ns,1.388644811,-0.0000782,0.0000429,-1.823539037,0.069184611,neg,ns,0.94769096,Wwox,Wwox_Intron,8,114745052,114745101,114745052,114745053,50,+,CGAAGCAGCAAGAGTAGTCACAGCAGTTGATGGACTATTTTTCAAATTGA,"Intron (Wwox-201/Wwox, intron 8 of 8)",8,114439655,115352708,913054,1,Wwox-201,305397,Wwox-201;Wwox-203;Wwox-204;Wwox-209,Wwox;Wwox;Wwox;Wwox,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,32,32,80707,ENSMUSG00000004637,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10424,cg07392671,-0.00000232,0.00000151,-1.533925201,0.126067967,loss,ns,0.00000418,0.00000256,1.631086122,0.103887626,pos,ns,0.001294077,0.000751152,1.722789246,0.085923909,pos,ns,1.065885973,-0.0000182,0.0000258,-0.702670366,0.482788508,neg,ns,0.058658139,Septin8,Septin8_fiveUTR,11,53519860,53519909,53519860,53519861,50,-,CGCCGCCGCCGCCAAGGGGAGTTTCCAGGAAGTGGCCATATTGGATCCAT,Promoter (<=1kb),11,53519908,53541898,21991,1,Septin8-203,0,Septin8-205;Septin8-201;Septin8-204;Septin8-202;Septin8-203;Septin8-207,Septin8;Septin8;Septin8;Septin8;Septin8;Septin8,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,6,9,,NA,mapped to different genes,11,53519650,53519870,221,*,221,27,0.778280543,0.808536585,0.122171946,2.06E-23,CpGisland,TRUE,U1,Pr-A
3617,cg06554809,-0.00000191,0.00000157,-1.216210866,0.224829855,loss,ns,0.00000436,0.00000267,1.631057497,0.103893669,pos,ns,0.001532149,0.000783341,1.955914228,0.05137314,pos,ns,1.289263888,-0.0000591,0.0000269,-2.194212289,0.028961955,neg,ns,0.968112049,Gm12067,Gm12067_Intergenic_upstream,11,24783711,24783760,24783759,24783760,50,-,TGATATTTAATACCATTTTATGAGGTGCCATCTTATAAAGACAATGCCCG,Distal Intergenic,11,24552438,24553962,1525,2,Gm12067-201,-229798,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,26,58,100417843,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18830,cg14787629,-0.00000135,0.00000407,-0.332334408,0.739861365,loss,ns,0.0000113,0.00000692,1.6308113,0.103945654,pos,ns,0.00378728,0.002026328,1.869036219,0.062560581,pos,ns,1.203699224,-0.0000684,0.0000697,-0.981178293,0.327269941,neg,ns,0.898175191,E130114P18Rik,E130114P18Rik_Intron,4,97584678,97584727,97584678,97584679,50,-,CGGGATATGCAATTTTGCTTTTTAATGAATCGTAAACAATTTGTATGGCA,"Intron (E130114P18Rik-204/E130114P18Rik, intron 3 of 5)",4,97568133,97778048,209916,2,E130114P18Rik-204,193321,E130114P18Rik-207;E130114P18Rik-201;E130114P18Rik-203;E130114P18Rik-202;E130114P18Rik-206;E130114P18Rik-204;E130114P18Rik-209;E130114P18Rik-208,E130114P18Rik;E130114P18Rik;E130114P18Rik;E130114P18Rik;E130114P18Rik;E130114P18Rik;E130114P18Rik;E130114P18Rik,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,24,319865,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15331,cg24777444,-0.00000934,0.00000276,-3.389320337,0.000791252,loss,ns,0.00000763,0.00000468,1.630808043,0.103946342,pos,ns,0.002217916,0.001371389,1.617276911,0.106835581,pos,ns,0.971284084,-0.0000807,0.0000472,-1.711385079,0.088010289,neg,ns,0.933724895,Arhgef33,Arhgef33_Exon,17,80381446,80381495,80381446,80381447,50,+,CGCAGCTCCTTCCGCAAGCTCTTTAAAAAGAAGTGAGTAGCCCTTAGACA,"Exon (Arhgef33-201/Arhgef33, exon 16 of 18)",17,80307407,80388688,81282,1,Arhgef33-201,74039,Arhgef33-201;Arhgef33-202;Arhgef33-206;Arhgef33-211;Arhgef33-207;Arhgef33-209;Arhgef33-210;Arhgef33-212,Arhgef33;Arhgef33;Arhgef33;Arhgef33;Arhgef33;Arhgef33;Arhgef33;Arhgef33,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,5,381112,ENSMUSG00000054901,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11011,cg19803918,-0.000000888,0.00000403,-0.22044905,0.825666559,loss,ns,0.0000112,0.00000684,1.630600936,0.10399009,pos,ns,0.001960003,0.002004449,0.977826037,0.328922822,pos,ns,0.482905993,-0.0000029,0.0000689,-0.042137787,0.966415984,neg,ns,0.091676989,Neurog1,Neurog1_threeUTR,13,56250741,56250790,56250789,56250790,50,+,AAGCCTTTTCATTGTATTGTCAGCCGGCTCAAACCGAATTTTCATGCTCG,3' UTR,13,56250478,56252163,1686,2,Neurog1-201,1373,Neurog1-201,Neurog1,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,18014,ENSMUSG00000048904,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
19794,cg18994219,-0.0000055,0.00000154,-3.56903458,0.000415047,loss,ns,0.00000427,0.00000262,1.63009723,0.10409655,pos,ns,0.000624768,0.000766677,0.814904175,0.415752762,pos,ns,0.381164857,0.0000113,0.0000264,0.430401045,0.667203003,pos,ns,0.958518951,Msl2,Msl2_Exon,9,101101994,101102043,101102042,101102043,50,+,GACCAGGCTCACTTTGGGCATTAACGTGACTAGCATTGCTGTGCGTAACG,"Exon (Msl2-201/Msl2, exon 2 of 2)",9,101074762,101104800,30039,1,Msl2-201,27232,Msl2-202;Msl2-201;Ppp2r3a-202;Ppp2r3a-201,Msl2;Msl2;Ppp2r3a;Ppp2r3a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,19,77853,ENSMUSG00000066415,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23999,cg19757814,-0.00000333,0.0000042,-0.794752679,0.427365408,loss,ns,-0.0000116,0.00000713,-1.630005406,0.104115967,neg,ns,0.000484716,0.002087919,0.232152873,0.816572461,pos,ns,0.088005271,-0.0000899,0.0000718,-1.25159064,0.211662664,neg,ns,0.878144752,Atxn2,Atxn2_threeUTR,5,121813383,121813432,121813431,121813432,50,-,AGGCTCATGTACAGTCAGGAATGGTTCCTTCTCATCCAACTGCCCATGCG,3' UTR,5,121711609,121814950,103342,1,Atxn2-201,101774,Atxn2-201;Atxn2-209;Atxn2-214;Atxn2-215;Atxn2-217;Atxn2-210;Atxn2-203;Atxn2-206;Atxn2-212;Atxn2-211;Atxn2-205;Atxn2-218;Sh2b3-205;Sh2b3-202;Sh2b3-208;Sh2b3-204;Sh2b3-201;Sh2b3-203,Atxn2;Atxn2;Atxn2;Atxn2;Atxn2;Atxn2;Atxn2;Atxn2;Atxn2;Atxn2;Atxn2;Atxn2;Sh2b3;Sh2b3;Sh2b3;Sh2b3;Sh2b3;Sh2b3,0;0;0;11637;11272;0;0;0;2719;2418;0;0;23393;23427;15309;22672;23418;23385,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,16,20239,ENSMUSG00000042605,conserved gene and region,5,121813431,121813604,174,*,174,15,0.632183908,0.881458967,0.086206897,8.65E-11,CpGisland,TRUE,U10,Tr-S
24420,cg09183440,-0.00000331,0.0000127,-0.259875883,0.795132026,loss,ns,0.0000352,0.0000216,1.629939589,0.104129886,pos,ns,0.011384806,0.006330886,1.798295728,0.073102932,pos,ns,1.136065202,-0.000189948,0.000217719,-0.872447213,0.383639691,neg,ns,0.494764057,Grik3,Grik3_Intron,4,125591832,125591881,125591880,125591881,50,-,AATCAGTTAATTTAACCAGAAACATTAATAATGTATTTCTTTGCCACTCG,"Intron (Grik3-201/Grik3, intron 1 of 15)",4,125490700,125714173,223474,1,Grik3-201,101132,Grik3-201,Grik3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,14,18,14807,ENSMUSG00000001985,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13489,cg01961426,0.0000205,0.00000633,3.242856929,0.001312356,gain,ns,-0.0000175,0.0000108,-1.629554478,0.10421136,neg,ns,0.009318626,0.003150163,2.958140829,0.003333154,pos,ns,2.477144556,-0.000331146,0.000108334,-3.056713994,0.002432531,neg,ns,0.291500929,Gm34783,Gm34783_Intergenic_downstream,7,70788244,70788293,70788244,70788245,50,-,CGCAGGGAGAGATTAAGATCTCGTTGAAAAGGAATAAAAATAACATCATC,Distal Intergenic,7,70912518,70912820,303,2,Gm34783-201,124576,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,5,102638149,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9926,cg16889929,-0.000000532,0.00000188,-0.28271871,0.777581152,loss,ns,-0.00000521,0.0000032,-1.629491111,0.104224771,neg,ns,-0.002191097,0.000936367,-2.339998949,0.019918034,neg,ns,1.700753541,0.00000932,0.0000322,0.289491429,0.772398855,pos,ns,0.966871897,Hnrnpab,Hnrnpab_Exon,11,51601804,51601853,51601804,51601805,50,-,CGCCATAGCCAGGCCCGTAGCCCTGCTGGTAGCCGTAGCCCTGGTTCCAG,"Exon (Hnrnpab-202/Hnrnpab, exon 7 of 7)",11,51600100,51606847,6748,2,Hnrnpab-201,4994,Hnrnpab-201;Hnrnpab-202;Hnrnpab-203;Phykpl-202;Phykpl-206;Phykpl-201;Phykpl-204;Phykpl-208,Hnrnpab;Hnrnpab;Hnrnpab;Phykpl;Phykpl;Phykpl;Phykpl;Phykpl,0;0;0;0;0;17015;17001;2537,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,15384,ENSMUSG00000020358,conserved gene and region,11,51601756,51601862,107,*,107,11,0.654205608,0.961601307,0.102803738,7.87E-09,CpGisland,TRUE,U10,Tr-S
17510,cg12399476,-0.000000105,0.0000045,-0.023366989,0.981372571,loss,ns,0.0000125,0.00000765,1.629448805,0.104233725,pos,ns,0.006321314,0.00224172,2.819849994,0.005114052,pos,ns,2.291234819,-0.000239553,0.0000771,-3.107338517,0.00206263,neg,ns,0.90925436,Nrxn1,Nrxn1_Exon,17,90621814,90621863,90621862,90621863,50,-,AACCTAGATTCTGTTTCCATATAGCTGAGTTTGTCATGTGTCGTCAACCG,"Exon (Nrxn1-212/Nrxn1, exon 2 of 2)",17,90033631,91088907,1055277,2,Nrxn1-202,467044,Nrxn1-202;Nrxn1-207;Nrxn1-216;Nrxn1-209;Nrxn1-201;Nrxn1-206;Nrxn1-208;Nrxn1-210;Nrxn1-220;Nrxn1-224;Nrxn1-212,Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,22,27,18189,ENSMUSG00000024109,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25417,cg03709073,-0.0000111,0.00000701,-1.586383848,0.11367173,loss,ns,-0.0000194,0.0000119,-1.629184582,0.104289664,neg,ns,0.004110274,0.00348699,1.178745591,0.239403446,pos,ns,0.620869603,-0.000290969,0.000119917,-2.426410742,0.015819062,neg,ns,0.801773175,Hnrnpr,Hnrnpr_Exon,4,136332457,136332506,136332505,136332506,50,-,TTCTGCTTCCTTGAATATGAGGATCACAAGTCAGCAGCACAAGCCAGACG,"Exon (Hnrnpr-204/Hnrnpr, exon 7 of 10)",4,136310942,136340681,29740,1,Hnrnpr-204,21515,Hnrnpr-204;Hnrnpr-202;Hnrnpr-207;Hnrnpr-201;Hnrnpr-206;Hnrnpr-205;Hnrnpr-208,Hnrnpr;Hnrnpr;Hnrnpr;Hnrnpr;Hnrnpr;Hnrnpr;Hnrnpr,0;0;0;0;0;20866;-3567,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,7,74326,ENSMUSG00000066037,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7154,cg22077750,0.0000351,0.00000496,7.067781291,1.05E-11,gain,yes,-0.0000137,0.00000843,-1.629077971,0.104312241,neg,ns,0.004670411,0.002470495,1.890475743,0.059626861,pos,ns,1.22455805,-0.000363942,0.000085,-4.283677964,0.0000246,neg,ns,0.844785837,Smpd2,Smpd2_threeUTR,10,41488421,41488470,41488469,41488470,50,-,AGGCTCACACACTGGATGAACTGGGCCAATTCCCAAGCTTGGGCCACACG,3' UTR,10,41485642,41490330,4689,2,Smpd2-203,1860,Mical1-201;Mical1-203;Mical1-209;Mical1-202;Mical1-207;Mical1-205;Mical1-204;Mical1-211;Ppil6-201;Ppil6-203;Smpd2-203;Smpd2-206;Smpd2-201;Smpd2-205;Smpd2-202;Smpd2-209;Smpd2-207;Smpd2-204;Smpd2-208,Mical1;Mical1;Mical1;Mical1;Mical1;Mical1;Mical1;Mical1;Ppil6;Ppil6;Smpd2;Smpd2;Smpd2;Smpd2;Smpd2;Smpd2;Smpd2;Smpd2;Smpd2,12107;12107;12085;12053;12044;4347;2310;2049;-1969;-2007;0;0;0;0;-176;0;0;0;1899,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,1,20598,ENSMUSG00000019822,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16910,cg27257889,-0.000025,0.00000885,-2.829749025,0.004962391,loss,ns,0.0000245,0.000015,1.62901367,0.10432586,pos,ns,0.006528067,0.004404519,1.482129486,0.13932164,pos,ns,0.855981423,-0.000274382,0.000151471,-1.811450479,0.071038842,neg,ns,0.643930765,Ppm1e,Ppm1e_Exon,11,87244330,87244379,87244330,87244331,50,+,CGCATGTTTTTGATGGCATGGATTGATGTCTCATAATAAAGCTGGGGTCT,"Exon (Ppm1e-201/Ppm1e, exon 3 of 7)",11,87226906,87359023,132118,2,Ppm1e-201,114644,Ppm1e-201;Ppm1e-202,Ppm1e;Ppm1e,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,320472,ENSMUSG00000046442,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9390,cg15951691,-0.00000517,0.00000147,-3.510052997,0.000514453,loss,ns,0.00000407,0.0000025,1.628907205,0.104348412,pos,ns,0.001172888,0.000732634,1.600919421,0.110413299,pos,ns,0.956978616,-0.0000261,0.0000252,-1.033998607,0.301942767,neg,ns,0.050026225,Gm44965,Gm44965_fiveUTR,6,48593918,48593967,48593966,48593967,50,-,GGAGGTTGGGGACGGGCCTGGCAGTTGTGAACTCGAACCTGCCGCTGTCG,Promoter (<=1kb),6,48593941,48613251,19311,1,Gm44965-202,0,Gm44965-202;Gm44965-201;Gm45021-201;Repin1-206;Repin1-201;Repin1-207;Repin1-202;Repin1-204;Repin1-203;Repin1-205,Gm44965;Gm44965;Gm45021;Repin1;Repin1;Repin1;Repin1;Repin1;Repin1;Repin1,0;0;0;0;0;0;0;0;0;-352,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,1,,NA,mapped to different genes,6,48593727,48594311,585,*,585,63,0.728205128,0.842034317,0.107692308,3.36E-50,CpGisland,TRUE,U1,Pr-A
24107,cg00366950,-0.0000014,0.00000151,-0.92426991,0.356064686,loss,ns,-0.00000418,0.00000257,-1.628815403,0.104367862,neg,ns,-0.000134603,0.000751788,-0.179044467,0.858019748,neg,ns,0.066502717,-0.0000137,0.0000259,-0.531219166,0.595647316,neg,ns,0.956379992,Pcca,Pcca_Exon,14,122582633,122582682,122582633,122582634,50,+,CGGATGAGGCTGTCTGTGTTGGCCCAGCTCCCACCAGTAAAAGCTACCTC,"Exon (Pcca-209/Pcca, exon 5 of 5)",14,122534324,122582977,48654,1,Pcca-209,48309,Pcca-209;Pcca-211;Pcca-201;Pcca-204;Pcca-213,Pcca;Pcca;Pcca;Pcca;Pcca,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,7,110821,ENSMUSG00000041650,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18540,cg09802094,0.0000174,0.00000609,2.861032227,0.004509586,gain,ns,0.0000168,0.0000103,1.628663597,0.10440003,pos,ns,0.003659042,0.003029737,1.207709444,0.228079625,pos,ns,0.64191351,0.0000415,0.000104192,0.39815879,0.690787208,pos,ns,0.036245758,Hoxb8,Hoxb8_fiveUTR,11,96282051,96282100,96282099,96282100,50,+,CCGAAGCGACCCTGACATTTAGAAAGACTCCAATTGCCTCGTTAAAATCG,Promoter (<=1kb),11,96281905,96285315,3411,1,Hoxb8-201,146,Hoxb7-201;Hoxb8-201;Hoxb8-202;Hoxb8-203,Hoxb7;Hoxb8;Hoxb8;Hoxb8,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,11,26,15416,ENSMUSG00000056648,mapped to different genes,11,96282018,96282200,183,*,183,12,0.486338798,1.109090909,0.065573771,0.000000226,CpGisland,TRUE,U13,Hc-P
13653,cg01374343,0.0000106,0.00000955,1.111925837,0.267031612,gain,ns,-0.0000264,0.0000162,-1.628533569,0.10442759,neg,ns,-0.014037182,0.004751986,-2.953961393,0.003377356,neg,ns,2.47142312,0.000504658,0.00016342,3.088099673,0.002196625,pos,ns,0.782426057,Gm17988,Gm17988_Intergenic_downstream,7,71731996,71732045,71732044,71732045,50,+,AAGACTTGTCACCCCTAGTGAGACACTCACTTTCTAAATAGAATGTGTCG,Distal Intergenic,7,71717837,71718371,535,1,Gm17988-201,14159,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,100416233,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5472,cg04950139,0.0000391,0.0000108,3.611243479,0.000355303,gain,ns,0.0000299,0.0000184,1.628504642,0.104433722,pos,ns,0.015996311,0.005387153,2.969343966,0.003217269,pos,ns,2.492512678,-0.000341741,0.000185264,-1.84462124,0.066046524,neg,ns,0.718947729,Mvb12b,Mvb12b_Intron,2,34033270,34033319,34033318,34033319,50,-,ATTATTACTTCAAAGTGCAATCAGTTGTCACAGCGGAGAGAGCTTGCACG,"Intron (C230014O12Rik-201/C230014O12Rik-201, intron 1 of 3)",2,33729953,33887946,157994,2,Mvb12b-201,-145373,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,28,47,72543,ENSMUSG00000038740,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7590,cg03556243.2,0.0000456,0.0000107,4.247260816,0.0000286,gain,ns,-0.0000297,0.0000182,-1.62849365,0.104436053,neg,ns,0.00926026,0.005343992,1.732835812,0.084119338,pos,ns,1.075104153,-0.000768959,0.000183779,-4.184139572,0.0000373,neg,ns,0.110851844,Zbtb20,Zbtb20_Exon,16,43363120,43363169,43363120,43363121,50,+,CGGTACAGTCCAGCATGAGCTGGAAATGTAGGAACCTCAGCCTCCCGAGC,"Exon (Zbtb20-214/Zbtb20, exon 1 of 4)",16,42875881,43463175,587295,1,Zbtb20-209,487239,Zbtb20-209;Zbtb20-211;Zbtb20-217;Zbtb20-218;Zbtb20-204;Zbtb20-215;Zbtb20-201;Zbtb20-203;Zbtb20-214;Zbtb20-213;Zbtb20-219;Zbtb20-216,Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,17,98,56490,ENSMUSG00000022708,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27031,cg02851257,-0.00000119,0.00000214,-0.557711352,0.577444012,loss,ns,0.00000592,0.00000364,1.628220113,0.104494053,pos,ns,0.001840366,0.001065908,1.72657153,0.085240878,pos,ns,1.069352088,-0.0000394,0.0000367,-1.074084346,0.283620203,neg,ns,0.955834793,Dlgap4,Dlgap4_fiveUTR,2,156748054,156748103,156748054,156748055,50,-,CGGAGGACAACGGACCCAAAGCGATCGATGTGATGGCACCCTCCTCAGAG,5' UTR,2,156613705,156764361,150657,1,Dlgap4-205,134349,Dlgap4-205;Dlgap4-212;Dlgap4-206;Dlgap4-202;Dlgap4-210;Dlgap4-209;Dlgap4-204;Dlgap4-208;Dlgap4-211;Dlgap4-214;Dlgap4-213;Dlgap4-201;Dlgap4-203,Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,10,17,228836,ENSMUSG00000061689,conserved gene and region,2,156747941,156748091,151,*,151,11,0.529801325,1.040726817,0.072847682,0.000000299,CpGisland,TRUE,NA,NRS
386,cg24441305,-0.00000316,0.00000229,-1.381520087,0.168113978,loss,ns,0.00000633,0.00000389,1.628014376,0.104537694,pos,ns,0.002820023,0.0011384,2.477180091,0.013775416,pos,ns,1.860895278,-0.000126642,0.0000391,-3.234828027,0.001348566,neg,ns,0.949979789,Zfhx4,Zfhx4_Exon,3,5330311,5330360,5330359,5330360,50,+,ATGCGAAACTTTATGCATTAAAACTACCCATATTGGAATTAAATGAGACG,"Exon (Zfhx4-202/Zfhx4, exon 2 of 2)",3,5218526,5413165,194640,1,Zfhx4-203,111785,Zfhx4-203;Zfhx4-202;Zfhx4-201;Zfhx4-205,Zfhx4;Zfhx4;Zfhx4;Zfhx4,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,23,77,80892,ENSMUSG00000025255,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5686,cg20211977,0.0000675,0.0000128,5.275088645,0.00000025,gain,yes,-0.0000354,0.0000217,-1.627969548,0.104547205,neg,ns,0.05645005,0.006367878,8.864813595,6.14E-17,pos,yes,16.21160477,-0.000901363,0.000218991,-4.115984326,0.0000495,neg,ns,0.821004868,Mapkap1,Mapkap1_Intron,2,34556965,34557014,34557013,34557014,50,+,TATTTATTTACTCAGAGAAGTGAGATTCGTTTCCAATCTTATCTTTCTCG,"Intron (Mapkap1-204/Mapkap1, intron 6 of 10)",2,34406862,34623475,216614,1,Mapkap1-204,150103,Mapkap1-204;Mapkap1-202;Mapkap1-201;Mapkap1-209;Mapkap1-203,Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,59,227743,ENSMUSG00000038696,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8781,cg10708287,0.000178636,0.0000123,14.49446458,1.05E-36,gain,yes,-0.0000341,0.0000209,-1.627882923,0.104565585,neg,ns,0.011699193,0.006134009,1.907267114,0.057410064,pos,ns,1.241011966,0.000142268,0.000210948,0.67442373,0.500544581,pos,ns,0.338043247,Fgf8,Fgf8_fiveUTR,19,45741603,45741652,45741603,45741604,50,+,CGGCGGCTGAGCTGATCCGTCACCAGGCTCTGCTCCCTCACATGCTGTGT,5' UTR,19,45736798,45742874,6077,2,Fgf8-201,1222,Fgf8-201;Fgf8-206;Fgf8-202;Fgf8-205;Fgf8-203;Fgf8-204,Fgf8;Fgf8;Fgf8;Fgf8;Fgf8;Fgf8,0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,6,18,14179,ENSMUSG00000025219,conserved gene and region,19,45741448,45741621,174,*,174,14,0.643678161,0.780769231,0.08045977,1.09E-09,CpGisland,TRUE,U13,Hc-P
20797,cg21450190,0.00011744,0.00000813,14.44624139,1.59E-36,gain,yes,-0.0000225,0.0000138,-1.627599377,0.104625767,neg,ns,0.025253556,0.004046102,6.241453282,1.42E-09,pos,ns,8.84678281,-0.001516574,0.000139145,-10.89922755,1.24E-23,neg,yes,0.134154548,Them7,Them7_Intron,2,105334405,105334454,105334453,105334454,50,-,CCTGGCTGGCTAATGGGCTTATCAAAATTCATGATGTAATAAGAAGGCCG,"Intron (Them7-201/Them7, intron 3 of 3)",2,105224320,105379796,155477,1,Them7-201,110085,Them7-201;Them7-202,Them7;Them7,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,7,74088,ENSMUSG00000055312,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21286,cg22632128,0.00000988,0.00000789,1.252264667,0.211417369,gain,ns,-0.0000218,0.0000134,-1.626921709,0.104769714,neg,ns,0.004928158,0.003926178,1.255204838,0.210349781,pos,ns,0.677057935,-0.000503738,0.000135021,-3.730814386,0.000226948,neg,ns,0.63795329,Kcna2,Kcna2_Exon,3,107104516,107104565,107104516,107104517,50,-,CGTCCTCTGCCTGAAAATGAGTTTCAGAGACAAGTGTGGCTTCTCTTTGA,"Exon (Kcna2-203/Kcna2, exon 3 of 3)",3,107101146,107107737,6592,1,Kcna2-203,3370,Kcna2-203;Kcna2-201;Kcna2-202,Kcna2;Kcna2;Kcna2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,4,16490,ENSMUSG00000040724,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14902,cg11978397,-0.00000187,0.00000191,-0.97837104,0.32865373,loss,ns,0.00000529,0.00000325,1.626908684,0.104772482,pos,ns,0.002552593,0.000952651,2.679462251,0.00776787,pos,ns,2.109698066,-0.0000716,0.0000328,-2.185208581,0.029621842,neg,ns,0.962806849,Fam222b,Fam222b_Exon,11,78153754,78153803,78153754,78153755,50,+,CGTATGCTAAGAAGGTCGCAAACAACCCACTGACTATAAAAATCTTCCCC,"Exon (Fam222b-201/Fam222b, exon 3 of 3)",11,78094660,78156700,62041,1,Fam222b-201,59094,Fam222b-201;Fam222b-202;Fam222b-203;Gm12571-201;Traf4-203,Fam222b;Fam222b;Fam222b;Gm12571;Traf4,0;0;0;-4316;11786,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,21,216971,ENSMUSG00000037750,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27001,cg08640766,-0.0000032,0.00000217,-1.47333125,0.141676383,loss,ns,0.000006,0.00000369,1.626803826,0.10479477,pos,ns,0.003732442,0.001081068,3.452549901,0.000632488,pos,ns,3.198948008,-0.000121192,0.0000372,-3.259783297,0.001238954,neg,ns,0.950100993,Cpne1,Cpne1_Exon,2,156098175,156098224,156098175,156098176,50,+,CGCATCATACCAAGCCTTGCATCTTCATCAGTGGCAAAAACGATGAAAGC,"Exon (Gm28036-202/Gm28036, exon 3 of 17)",2,156071842,156111935,40094,2,Cpne1-217,13711,Cpne1-217;Cpne1-209;Cpne1-202;Cpne1-203;Cpne1-201;Cpne1-210;Cpne1-206;Cpne1-212;Cpne1-208;Cpne1-205;Cpne1-213;Cpne1-216;Gm28036-201;Gm28036-202;Gm28036-203;Gm28036-204;Gm28036-205;Gm28036-208;Gm28036-207;Gm28036-206;Rbm12-201;Rbm12-202;Rbm12-204;Rbm12-203;Rbm12-205,Cpne1;Cpne1;Cpne1;Cpne1;Cpne1;Cpne1;Cpne1;Cpne1;Cpne1;Cpne1;Cpne1;Cpne1;Gm28036;Gm28036;Gm28036;Gm28036;Gm28036;Gm28036;Gm28036;Gm28036;Rbm12;Rbm12;Rbm12;Rbm12;Rbm12,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;-1247;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,9,266692,ENSMUSG00000074643,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17444,cg05857652,-0.0000206,0.00000671,-3.064572152,0.002371374,loss,ns,0.0000185,0.0000114,1.626172544,0.104929031,pos,ns,0.000822871,0.003338631,0.246469753,0.805481741,pos,ns,0.0939443,-0.0000486,0.000114815,-0.423389885,0.672304412,neg,ns,0.086285501,Gatad2b,Gatad2b_Exon,3,90292843,90292892,90292891,90292892,50,+,AAAACGTCTCTAAGGTAAAGTTGCAGCCTGAAGCGATTTTTTGACCCCCG,Promoter (<=1kb),3,90293178,90363407,70230,1,Gatad2b-205,-286,Gatad2b-205;Gatad2b-206;Gatad2b-202;Gatad2b-204,Gatad2b;Gatad2b;Gatad2b;Gatad2b,0;-292;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,6,229542,ENSMUSG00000042390,conserved gene but different region,3,90292704,90292961,258,*,258,18,0.562015504,0.884571429,0.069767442,2.91E-11,CpGisland,TRUE,NA,NRS
17088,cg02898645,0.000000705,0.00000511,0.137936021,0.890380533,gain,ns,0.0000141,0.00000869,1.626120749,0.104940053,pos,ns,0.007391749,0.002545604,2.903731576,0.003952189,pos,ns,2.403162258,-0.000195107,0.0000875,-2.228694087,0.026551004,neg,ns,0.883973467,Msi2,Msi2_Exon,11,88348955,88349004,88348955,88348956,50,-,CGCGCCAAAATTCGGTTGAGCACTGTAGCTATTCAGGACTGGTGTGCAGA,"Exon (Msi2-201/Msi2, exon 12 of 14)",11,88339382,88718229,378848,2,Msi2-203,369225,Msi2-203;Msi2-201,Msi2;Msi2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,36,76626,ENSMUSG00000069769,conserved gene and region,11,88348768,88348968,201,*,201,21,0.696517413,0.87012987,0.104477612,9.68E-17,CpGisland,TRUE,U11,Tr-P
4127,cg17978037,-0.000000632,0.00000285,-0.221457273,0.824882206,loss,ns,-0.00000788,0.00000485,-1.62603899,0.104957453,neg,ns,-0.005072601,0.001420383,-3.571290121,0.000411629,neg,ns,3.385493994,0.0000817,0.0000488,1.672924695,0.095350926,pos,ns,0.901396233,Syngap1,Syngap1_Exon,17,26944686,26944735,26944686,26944687,50,+,CGTCCTGGTTGGAACCCTCGGTTCTGCATCATCTCGGGGAACCAGCTGCT,"Exon (Syngap1-204/Syngap1, exon 2 of 19)",17,26941253,26972434,31182,1,Syngap1-204,3433,Syngap1-204;Syngap1-213;Syngap1-208;Syngap1-202;Syngap1-207;Syngap1-203,Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,18,240057,ENSMUSG00000067629,conserved gene and region,17,26944638,26944839,202,*,202,13,0.608910891,0.715141612,0.064356436,7.49E-08,CpGisland,TRUE,U11,Tr-P
18105,cg08858156,-0.00000438,0.00000126,-3.472923491,0.000588037,loss,ns,0.00000348,0.00000214,1.625937314,0.104979095,pos,ns,0.000907253,0.000627085,1.446777614,0.148969596,pos,ns,0.826902359,-0.00000565,0.0000216,-0.262162992,0.793369904,neg,ns,0.045295553,Mbtd1,Mbtd1_fiveUTR,11,93886369,93886418,93886369,93886370,50,-,CGGACAACCCCTACCCATGAGGCCCTGATGGAAAACACAAAGGATCTGGT,Promoter (<=1kb),11,93885852,93946985,61134,1,Mbtd1-205,517,Mbtd1-205;Mbtd1-203;Mbtd1-210;Mbtd1-207;Mbtd1-211;Mbtd1-202;Mbtd1-206;Mbtd1-201;Utp18-201;Utp18-202,Mbtd1;Mbtd1;Mbtd1;Mbtd1;Mbtd1;Mbtd1;Mbtd1;Mbtd1;Utp18;Utp18,0;0;0;0;0;0;0;0;-603;-603,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,7,103537,ENSMUSG00000059474,conserved gene and region,11,93886219,93886374,156,*,156,16,0.769230769,0.709292413,0.102564103,1.06E-12,CpGisland,TRUE,U1,Pr-A
9195,cg01759800,0.0000211,0.00000465,4.533897032,0.00000828,gain,ns,-0.0000129,0.00000791,-1.625645664,0.105041193,neg,ns,-0.006794492,0.002316281,-2.933363312,0.003603139,neg,ns,2.443318964,0.000137546,0.0000797,1.726735802,0.085211313,pos,ns,0.809103606,Cadm1,Cadm1_Intergenic_upstream,9,47506216,47506265,47506216,47506217,50,+,CGGAGAGCAGGGAAGGCTAAAGCCGGAGCCTAATTCATGATGCATGAACG,Distal Intergenic,9,47530173,47853385,323213,1,Cadm1-204,-23908,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,18,77,54725,ENSMUSG00000032076,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15116,cg21304426,-0.00000374,0.0000025,-1.492067404,0.136698413,loss,ns,0.00000692,0.00000426,1.625543119,0.105063034,pos,ns,0.004778492,0.001246661,3.833031487,0.000153274,pos,ns,3.814530389,-0.000164008,0.0000429,-3.825486859,0.000157826,neg,ns,0.943477745,Wsb1,Wsb1_threeUTR,11,79243390,79243439,79243390,79243391,50,+,CGACCAGCACCTGTGTACGTACAGTACACCTTGCAGCCGAATGCAAGGTT,3' UTR,11,79239372,79254671,15300,2,Wsb1-201,11232,Wsb1-201;Wsb1-206;Wsb1-202;Wsb1-207;Wsb1-205;Wsb1-203;Wsb1-204,Wsb1;Wsb1;Wsb1;Wsb1;Wsb1;Wsb1;Wsb1,0;-366;0;-441;0;0;7585,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,7,7,78889,ENSMUSG00000017677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8272,cg15813523,-0.00000284,0.00000279,-1.017474587,0.309721136,loss,ns,-0.0000077,0.00000474,-1.625513517,0.105069339,neg,ns,-0.000858673,0.001387347,-0.618931457,0.536416061,neg,ns,0.270498227,-0.00000291,0.0000477,-0.060910202,0.951469974,neg,ns,0.942888159,Jarid2,Jarid2_Exon,13,44911174,44911223,44911222,44911223,50,-,ATTCCCTGGCTAAATATTGGCATGGTCTTTTCTACCTCATGCTGGTCTCG,"Exon (Jarid2-210/Jarid2, exon 13 of 19)",13,44730774,44920108,189335,1,Jarid2-210,180400,Jarid2-210;Jarid2-201;Jarid2-208;Jarid2-216;Jarid2-211,Jarid2;Jarid2;Jarid2;Jarid2;Jarid2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,21,16468,ENSMUSG00000038518,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13321,cg21173269,-0.0000134,0.00000446,-3.009852623,0.002828362,loss,ns,0.0000123,0.00000758,1.625508756,0.105070354,pos,ns,0.000675527,0.002219236,0.304396038,0.761030422,pos,ns,0.118597982,0.0000271,0.0000763,0.354953564,0.722865743,pos,ns,0.923642987,Gm19082,Gm19082_Intron,16,70092272,70092321,70092272,70092273,50,-,CGAAAAACTCATGTGCCTCATGATTTAATCATAAGGGCTGACATTACTGT,"Intron (Gm49655-201/Gm49655-201, intron 1 of 4)",16,70143165,70144272,1108,2,Gm19082-201,52000,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,100418225,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17101,cg25566585,-0.00000201,0.00000257,-0.782552487,0.434487308,loss,ns,-0.0000071,0.00000437,-1.625341615,0.105105962,neg,ns,-0.000272438,0.001280309,-0.212790604,0.831630152,neg,ns,0.080069773,-0.0000444,0.000044,-1.008382497,0.3140573,neg,ns,0.961672483,Msi2,Msi2_Intron,11,88399338,88399387,88399338,88399339,50,+,CGGAAATCTCAGGTTTATACAATTTTCATTTAGGGAACATAAAGGTTAAC,"Intron (Msi2-203/Msi2, intron 8 of 13)",11,88339382,88718229,378848,2,Msi2-203,318842,Msi2-203;Msi2-201;Msi2-207,Msi2;Msi2;Msi2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,21,36,76626,ENSMUSG00000069769,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16282,cg10390230,0.0000021,0.00000116,1.811632683,0.071010594,gain,ns,-0.0000032,0.00000197,-1.625097691,0.105157947,neg,ns,-0.001235491,0.000577553,-2.139179902,0.033202011,neg,ns,1.47883561,0.0000368,0.0000199,1.851894766,0.064991586,pos,ns,0.978555858,Nfix,Nfix_Exon,8,84713792,84713841,84713840,84713841,50,-,AGTTGCCGTCCCGGGGTCCGATGCTGACAAACCGGTTGGCAGAGGAGGCG,"Exon (Nfix-204/Nfix, exon 10 of 11)",8,84704712,84773396,68685,2,Nfix-204,59555,Nfix-204;Nfix-201;Nfix-202;Nfix-203;Nfix-206;Nfix-205,Nfix;Nfix;Nfix;Nfix;Nfix;Nfix,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,20,49,18032,ENSMUSG00000001911,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11914,cg17651973,0.000182346,0.0000304,6.003182949,5.40E-09,gain,yes,-0.0000839,0.0000516,-1.62505904,0.105166186,neg,ns,0.014040079,0.015117857,0.928708245,0.353762864,pos,ns,0.451287759,-0.000437713,0.000519902,-0.841914376,0.400484901,neg,ns,0.190321477,Tank,Tank_Intergenic_downstream,2,61656476,61656525,61656524,61656525,50,+,AGCATTTGAGGCAGCAGCGTTCGCCTGCTGAACGGTGACAGATTGGCGCG,Distal Intergenic,2,61643831,61649977,6147,1,Tank-211,12645,Tank-205;Tank-201;Tank-206;Tank-203;Tank-204;Tank-202;Tank-208,Tank;Tank;Tank;Tank;Tank;Tank;Tank,0;0;0;0;0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,17,21353,ENSMUSG00000064289,mapped to different genes,2,61656429,61656917,489,*,489,60,0.707566462,0.985887097,0.122699387,1.21E-51,CpGisland,TRUE,U3,Pr-B
21143,cg25168196,0.000111387,0.0000178,6.257296109,1.30E-09,gain,yes,0.0000491,0.0000302,1.6248504,0.105210669,pos,ns,0.038919437,0.008859829,4.392797585,0.0000154,pos,ns,4.813054494,-0.001285632,0.000304689,-4.219491729,0.0000322,neg,ns,0.451669848,Gm17304,Gm17304_Intron,5,106560789,106560838,106560789,106560790,50,+,CGACACACGCAGTTTGTTATCATTCAATCTGCTTGAAACCGCAAACTGGT,"Intron (Gm28050-202/Gm28050-202, intron 1 of 2)",5,106609098,106609201,104,1,Gm17304-201,-48260,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,35,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
12749,cg10487093,0.0000587,0.00000434,13.5325978,4.17E-33,gain,yes,-0.000012,0.00000738,-1.624660064,0.105251264,neg,ns,0.001982435,0.002160632,0.917525668,0.359580522,pos,ns,0.444203841,0.00000856,0.0000743,0.115143142,0.90840621,pos,ns,0.097688887,Tpm1,Tpm1_fiveUTR,9,67049090,67049139,67049138,67049139,50,-,TGTCGAGCTTCAGCATCTGCATCTTCTTCTTGATGGCGTCCATGGTGGCG,Promoter (<=1kb),9,67032220,67049118,16899,2,Tpm1-217,0,Tpm1-215;Tpm1-216;Tpm1-202;Tpm1-218;Tpm1-214;Tpm1-213;Tpm1-210;Tpm1-205;Tpm1-203;Tpm1-207;Tpm1-201;Tpm1-217;Tpm1-219,Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,10,22003,ENSMUSG00000032366,conserved gene and region,9,67049029,67049216,188,*,188,20,0.638297872,1.054994388,0.106382979,3.98E-16,CpGisland,TRUE,U3,Pr-B
19935,cg03516335,-0.00000617,0.00000491,-1.256485519,0.209885988,loss,ns,0.0000136,0.00000835,1.624528595,0.10527931,pos,ns,0.002335635,0.002445128,0.955220237,0.340210614,pos,ns,0.468252141,-0.00000211,0.0000841,-0.025066819,0.980017794,neg,ns,0.546294257,Clpb,Clpb_Intron,7,101682039,101682088,101682039,101682040,50,-,CGCTTTGTATTGATTGGTCCTAAAGAAAGAGGAAGAAAAATCAAGTGGTA,"Intron (Clpb-205/Clpb, intron 2 of 5)",7,101663633,101722922,59290,1,Clpb-205,18406,Clpb-205;Clpb-201;Clpb-202;Clpb-206;Clpb-211;Clpb-203;Clpb-208;Clpb-207;Clpb-210,Clpb;Clpb;Clpb;Clpb;Clpb;Clpb;Clpb;Clpb;Clpb,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,21,21,20480,ENSMUSG00000001829,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21164,cg10983579,-0.0000554,0.0000146,-3.792804286,0.000179059,loss,ns,0.0000403,0.0000248,1.62443499,0.105299283,pos,ns,0.035213811,0.007274716,4.840575264,0.00000205,pos,ns,5.689173595,-0.00157428,0.000250177,-6.292669535,1.06E-09,neg,yes,0.5475473,Mpped2,Mpped2_Exon,2,106577167,106577216,106577167,106577168,50,-,CGTGTTCACTTAACTCATTGACATGTTGTTTTCCAAGAGCTGATTGATGT,"Exon (Gm14014-201/Gm14014-201, exon 2 of 2)",2,106693269,106868356,175088,1,Mpped2-202,-116102,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,16,33,77015,ENSMUSG00000016386,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15460,cg24741189,0.0000744,0.0000188,3.958449487,0.0000936,gain,ns,-0.0000518,0.0000319,-1.624252987,0.105338126,neg,ns,0.010247018,0.00935006,1.095930785,0.273959728,pos,ns,0.562313273,-0.000404122,0.000321548,-1.256801331,0.209771733,neg,ns,0.525733008,Srsf5,Srsf5_Exon,12,80948539,80948588,80948587,80948588,50,-,CTTCCATCGATTGGGTAGTGTCCTTCAAGTGGGTGGCGAAGAGCCAGTCG,"Exon (Srsf5-207/Srsf5, exon 5 of 7)",12,80945504,80950507,5004,1,Srsf5-201,3035,Slc10a1-202;Slc10a1-201;Srsf5-201;Srsf5-204;Srsf5-207;Srsf5-202;Srsf5-203;Srsf5-212;Srsf5-211;Srsf5-206;Srsf5-208;Srsf5-210;Srsf5-205;Srsf5-209,Slc10a1;Slc10a1;Srsf5;Srsf5;Srsf5;Srsf5;Srsf5;Srsf5;Srsf5;Srsf5;Srsf5;Srsf5;Srsf5;Srsf5,20117;19491;0;0;0;0;0;0;3005;0;2969;2960;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,Exon,10,10,20384,ENSMUSG00000021134,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23013,cg17872229,0.0000717,0.0000128,5.616368596,4.34E-08,gain,yes,-0.0000352,0.0000217,-1.624148467,0.105360437,neg,ns,0.017715825,0.006357068,2.786791728,0.00565153,pos,ns,2.247833969,-0.000499909,0.000218619,-2.286665702,0.0228893,neg,ns,0.237996452,Jmjd6,Jmjd6_Exon,11,116839917,116839966,116839917,116839918,50,-,CGTGCTGTATCTGTTCTGTGGATAAACAGAGGAGCTAAGTCTCCAGGGCA,"Exon (Jmjd6-206/Jmjd6, exon 4 of 6)",11,116837432,116843281,5850,2,Jmjd6-206,3315,Jmjd6-206;Jmjd6-201;Jmjd6-203;Jmjd6-207;Jmjd6-202;Jmjd6-204;Jmjd6-205;Mettl23-201;Mettl23-206;Mettl23-202;Mettl23-207;Mettl23-208;Mettl23-203;Mettl23-204,Jmjd6;Jmjd6;Jmjd6;Jmjd6;Jmjd6;Jmjd6;Jmjd6;Mettl23;Mettl23;Mettl23;Mettl23;Mettl23;Mettl23;Mettl23,0;0;0;0;0;0;0;-3312;0;-3595;-3619;-3707;-3709;-3709,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,2,107817,ENSMUSG00000056962,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
7575,cg19929852,-0.00000469,0.00000475,-0.986148891,0.324829106,loss,ns,0.0000131,0.00000807,1.623969443,0.105398662,pos,ns,0.003861797,0.00236529,1.632695138,0.103548403,pos,ns,0.984856594,-0.000139625,0.0000813,-1.716514029,0.087066928,neg,ns,0.564437759,Cpeb2,Cpeb2_threeUTR,5,43286535,43286584,43286583,43286584,50,+,TAGCTTTGCTGCTATATAGGTGTTATGTGTAAATGCCACCTATTAATACG,3' UTR,5,43233170,43289723,56554,1,Cpeb2-204,53365,Cpeb2-204;Cpeb2-201;Cpeb2-205,Cpeb2;Cpeb2;Cpeb2,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,11,231207,ENSMUSG00000039782,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21007,cg27473842,-0.0000516,0.0000195,-2.648958841,0.008487629,loss,ns,-0.0000537,0.0000331,-1.623831462,0.105428131,neg,ns,0.003635234,0.009697387,0.374867421,0.708015393,pos,ns,0.1499573,-0.000676919,0.000333492,-2.029789502,0.04323172,neg,ns,0.630924885,Dcdc5,Dcdc5_Intron,2,106040743,106040792,106040743,106040744,50,+,CGTTTATTGCCCTTCATTAGCATTGGTGCTTAATTTAATATAGATCTGAA,"Intron (Dcdc5-203/Dcdc5, intron 3 of 8)",2,106003336,106157718,154383,1,Dcdc5-203,37407,Dcdc5-203;Dcdc5-202,Dcdc5;Dcdc5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,22,329482,ENSMUSG00000074981,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21764,cg15419333,-0.0000302,0.00000547,-5.531373857,6.76E-08,loss,yes,-0.0000151,0.00000929,-1.623708355,0.105454429,neg,ns,-0.006045954,0.002721809,-2.221299485,0.027052827,neg,ns,1.567787349,0.0000423,0.0000936,0.452086768,0.651522641,pos,ns,0.891854364,Zfhx3,Zfhx3_Intergenic_downstream,8,108978114,108978163,108978114,108978115,50,-,CGAGGCTATCCACTGCTGCTCTGGCAGAGCCTTTGATCAGTGAACTCAGT,Distal Intergenic,8,108714644,108961630,246987,1,Zfhx3-201,263519,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,177,11906,ENSMUSG00000038872,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12662,cg24949809,-0.00000138,0.00000237,-0.581943008,0.561028026,loss,ns,0.00000654,0.00000403,1.623607564,0.105475963,pos,ns,0.000227361,0.001179645,0.19273675,0.847291346,pos,ns,0.07196723,-0.0000242,0.0000406,-0.596106883,0.551538828,neg,ns,0.942771427,Herc1,Herc1_Exon,9,66451171,66451220,66451171,66451172,50,+,CGGTGCTATGAAGTCACTTAGTGCCCTTCTTGGCTGTAGTAAATATGCTG,"Exon (Herc1-201/Herc1, exon 38 of 78)",9,66350526,66508775,158250,1,Herc1-201,100645,Herc1-201;Herc1-206;Herc1-204,Herc1;Herc1;Herc1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,15,15,235439,ENSMUSG00000038664,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16092,cg12519712,-0.00000428,0.00000586,-0.730417708,0.465686532,loss,ns,-0.0000162,0.00000995,-1.623388789,0.105522718,neg,ns,-0.000859571,0.002916145,-0.294762682,0.768372473,neg,ns,0.114428202,-0.0000254,0.000100286,-0.253204457,0.800278053,neg,ns,0.839374295,Acaca,Acaca_Intron,11,84383981,84384030,84384029,84384030,50,-,ATTTGTCAAAGTCGGTCTTCTTCTGGATCACTGCCCTTTGATATTTCGCG,"Intron (Acaca-202/Acaca, intron 52 of 55)",11,84173122,84401651,228530,1,Acaca-202,210859,Acaca-202;Acaca-201,Acaca;Acaca,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,28,28,107476,ENSMUSG00000020532,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20900,cg14614737,0.0000123,0.00000593,2.078193698,0.038514009,gain,ns,0.0000164,0.0000101,1.623215059,0.105559857,pos,ns,0.002469498,0.002953294,0.836184424,0.403695225,pos,ns,0.393946388,0.0000669,0.000101564,0.658896612,0.510451265,pos,ns,0.073272707,Pax6,Pax6_Exon,2,105685039,105685088,105685087,105685088,50,-,TGCTTGGGAAATCCGAGACAGATTACTGTCCGAGGGGGTCTGTACCAACG,"Exon (Pax6-206/Pax6, exon 6 of 13)",2,105668900,105697364,28465,1,Pax6-206,16139,Pax6-206;Pax6-207;Pax6-210;Pax6-214;Pax6-208;Pax6-202;Pax6-205;Pax6-225;Pax6-204;Pax6-201;Pax6-203;Pax6-224;Pax6-219;Pax6-221;Pax6-213;Pax6-211;Pax6-222;Pax6-212;Pax6-215;Pax6-223;Pax6-209;Pax6-216,Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,Exon,31,78,18508,ENSMUSG00000027168,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
15429,cg20689299,-0.0000109,0.00000738,-1.482834055,0.139134387,loss,ns,-0.0000203,0.0000125,-1.623026547,0.105600169,neg,ns,-0.007342262,0.003672855,-1.9990614,0.046474418,neg,ns,1.332786039,0.0000876,0.000126309,0.693706067,0.488386023,pos,ns,0.088077449,Arrdc3,Arrdc3_Exon,13,80883773,80883822,80883821,80883822,50,+,ATCAGAGTAAAATCTCTTAAAATTCATGCAAGAGGACATGCGAAAGTACG,Promoter (<=1kb),13,80883384,80889643,6260,1,Arrdc3-202,389,Arrdc3-202;Arrdc3-203;Arrdc3-201;Arrdc3-205,Arrdc3;Arrdc3;Arrdc3;Arrdc3,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,8,105171,ENSMUSG00000074794,mapped to different genes,13,80883715,80883845,131,*,131,9,0.465648855,1.348970252,0.06870229,0.00000851,CpGisland,TRUE,U1,Pr-A
2645,cg23477257,-0.0000306,0.0000099,-3.09445047,0.002151531,loss,ns,0.0000273,0.0000168,1.622962423,0.105613884,pos,ns,0.01188727,0.004926111,2.413114661,0.016396722,pos,ns,1.785242964,-0.000493514,0.000169409,-2.913157555,0.003837944,neg,ns,0.678840162,Phtf2,Phtf2_Exon,5,20855113,20855162,20855161,20855162,50,+,TCAACTTACCTTCTTTTGATACCAGACTATAGCATCTGTGACTTTGGACG,"Exon (Phtf2-201/Phtf2, exon 2 of 18)",5,20758663,20882124,123462,2,Phtf2-201,26962,Phtf2-201;Phtf2-203;Phtf2-204;Phtf2-205;Phtf2-207,Phtf2;Phtf2;Phtf2;Phtf2;Phtf2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,68770,ENSMUSG00000039987,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19062,cg13893024,-0.00000762,0.00000323,-2.357692447,0.019009971,loss,ns,0.00000891,0.00000549,1.622904024,0.105626376,pos,ns,0.002806334,0.001608666,1.744510117,0.082061241,pos,ns,1.085861921,-0.0000643,0.0000553,-1.162387263,0.245972272,neg,ns,0.937060909,Ar,Ar_Exon,X,98315875,98315924,98315923,98315924,50,+,CAAAAATTCTTTGATGAACTTCGAATGAACTACATCAAGGAACTCGATCG,"Exon (Ar-201/Ar, exon 7 of 8)",20,98148769,98323215,174447,1,Ar-201,167106,Ar-201,Ar,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,11835,ENSMUSG00000046532,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23645,cg06940800,-0.00000492,0.00000252,-1.955779131,0.051389135,loss,ns,0.00000694,0.00000428,1.622848853,0.105638178,pos,ns,-0.002804131,0.001253025,-2.23788876,0.025938308,neg,ns,1.586058349,0.00000796,0.0000431,0.1847647,0.853534412,pos,ns,0.946230098,Acvr2b,Acvr2b_Exon,9,119433276,119433325,119433324,119433325,50,+,CAGCTTTGTGTGACCATCGAGGAGTGCTGGGACCATGATGCAGAGGCTCG,"Exon (Acvr2b-202/Acvr2b, exon 10 of 10)",9,119402118,119433515,31398,1,Acvr2b-202,31158,Acvr2b-202;Acvr2b-201;Acvr2b-205;Acvr2b-206;Acvr2b-203;Acvr2b-204,Acvr2b;Acvr2b;Acvr2b;Acvr2b;Acvr2b;Acvr2b,0;0;0;2930;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,6,11481,ENSMUSG00000061393,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20473,cg01022861,0.0000444,0.00000659,6.728271926,8.29E-11,gain,yes,-0.0000182,0.0000112,-1.62284767,0.105638431,neg,ns,0.006773902,0.003281531,2.064250376,0.039825656,pos,ns,1.399837063,-0.000149718,0.000112852,-1.326678894,0.185591369,neg,ns,0.08473024,Hoxc4,Hoxc4_Intergenic_downstream,15,103061692,103061741,103061692,103061693,50,-,CGTGATTTATGACTTCAGTCTTGGTTCACCAAGAGTTCACACGGCTTTCG,Distal Intergenic,15,103034395,103036852,2458,1,Hoxc4-201,27346,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,32,91,15423,ENSMUSG00000075394,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
16815,cg07598624,-0.000000132,0.00000165,-0.079939831,0.936336691,loss,ns,0.00000455,0.0000028,1.622770035,0.105655041,pos,ns,0.003261883,0.000821678,3.969781686,0.0000895,pos,ns,4.048358891,-0.000111637,0.0000283,-3.950706377,0.0000965,neg,ns,0.964196856,Lrba,Lrba_Intron,3,86600486,86600535,86600486,86600487,50,+,CGATAAGATAAAATGAGCTGATACATCATTTGCTGTGGTTTTATCATCTC,"Intron (Lrba-202/Lrba, intron 40 of 50)",3,86224680,86746712,522033,1,Lrba-202,375806,Lrba-202;Lrba-204;Lrba-201;Lrba-203;Lrba-205;Lrba-206,Lrba;Lrba;Lrba;Lrba;Lrba;Lrba,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,45,80877,ENSMUSG00000028080,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18524,cg09096374,0.000000614,0.00000197,0.312224725,0.755079649,gain,ns,0.00000542,0.00000334,1.622760976,0.10565698,pos,ns,0.001139033,0.000979051,1.163405474,0.245559732,pos,ns,0.60984285,0.0000245,0.0000337,0.72771729,0.467335929,pos,ns,0.044673339,Hoxb9,Hoxb9_Exon,11,96271559,96271608,96271607,96271608,50,+,GCTTAGCAGCTATTATGTCGACTCGATCATAAGTCACGAGAGTGAGGACG,Promoter (<=1kb),11,96271457,96276595,5139,1,Hoxb9-201,102,Hoxb9-201;Hoxb9-202,Hoxb9;Hoxb9,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,22,15417,ENSMUSG00000020875,mapped to different genes,11,96271433,96272051,619,*,619,70,0.675282714,0.992327951,0.113085622,2.33E-57,CpGisland,TRUE,U3,Pr-B
5036,cg26781440,0.00000636,0.00000307,2.069449874,0.039332153,gain,ns,-0.00000847,0.00000522,-1.622724773,0.105664726,neg,ns,0.002245366,0.001529722,1.467825686,0.143165436,pos,ns,0.844161819,-0.0000859,0.0000526,-1.633717748,0.10333327,neg,ns,0.926449803,Cpeb4,Cpeb4_Exon,11,31930140,31930189,31930140,31930141,50,+,CGTTCTCTAATCAACAGAGTTACATAGCTGCTATCAGTGCCCGCTTTGTT,"Exon (Cpeb4-201/Cpeb4, exon 9 of 10)",11,31872211,31931577,59367,1,Cpeb4-201,57929,Cpeb4-201;Cpeb4-202;Cpeb4-203,Cpeb4;Cpeb4;Cpeb4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,10,67579,ENSMUSG00000020300,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21053,cg12144888,0.00000144,0.00000233,0.617033955,0.537665246,gain,ns,0.00000641,0.00000395,1.622406731,0.105732797,pos,ns,0.005650455,0.001157591,4.881219398,0.00000169,pos,ns,5.772017272,-0.000134084,0.0000398,-3.368146155,0.000852242,neg,ns,0.057749398,Vrk1,Vrk1_Intergenic_downstream,12,106175398,106175447,106175446,106175447,50,+,AGTGAGGAGGTCCCAGGAGTCACTTCAGACCGGAGCGACTGCTGAGCCCG,Distal Intergenic,12,106030717,106075409,44693,1,Vrk1-204,144681,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,29,37,22367,ENSMUSG00000021115,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
16229,cg27303748,-0.0000247,0.00000287,-8.590194062,4.31E-16,loss,yes,-0.00000791,0.00000488,-1.622200068,0.105777049,neg,ns,-0.003876214,0.001428636,-2.713226266,0.007035647,neg,ns,2.152695967,0.00000308,0.0000491,0.062625404,0.950105158,pos,ns,0.937723694,Ctnnd1,Ctnnd1_Exon,2,84616690,84616739,84616690,84616691,50,+,CGTCAGTCTTCACCTTGTCATTGCGGTAGCATAAGTGTTGCAGGTATGCA,"Exon (Ctnnd1-204/Ctnnd1, exon 5 of 18)",2,84600071,84650745,50675,2,Ctnnd1-204,34006,Ctnnd1-204;Ctnnd1-206;Ctnnd1-207;Ctnnd1-208;Ctnnd1-209;Ctnnd1-216;Ctnnd1-220;Ctnnd1-221;Ctnnd1-222;Ctnnd1-224;Ctnnd1-203;Ctnnd1-211;Ctnnd1-212;Ctnnd1-213;Ctnnd1-214;Ctnnd1-215;Ctnnd1-218;Ctnnd1-219;Ctnnd1-210;Ctnnd1-205;Ctnnd1-223;Ctnnd1-201;Ctnnd1-202;Ctnnd1-228;Ctnnd1-217;Ctnnd1-226;Gm28635-201,Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Gm28635,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;-4112;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,4,12388,ENSMUSG00000034101,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11556,cg20928267,0.000123822,0.0000086,14.40514684,2.27E-36,gain,yes,-0.0000237,0.0000146,-1.622145301,0.105788778,neg,ns,0.003968165,0.004278145,0.927543389,0.354366068,pos,ns,0.450547871,-0.000055,0.000147125,-0.373681461,0.708896747,neg,ns,0.192664863,Vax1,Vax1_Promoter,19,59171380,59171429,59171428,59171429,50,-,ATGGCAATTATCTAATTGGACTATTAACAAACAGTCCTCTGAGTGCGGCG,Promoter (1-2kb),19,59166187,59170056,3870,2,Vax1-201,-1373,Vax1-201;Vax1-202,Vax1;Vax1,0;-4400,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,12,18,22326,ENSMUSG00000006270,conserved gene and region,19,59171425,59171501,77,*,77,8,0.727272727,0.811594203,0.103896104,0.00000163,CpGisland,TRUE,U13,Hc-P
9581,cg21519567,0.00003,0.00000326,9.204579547,5.26E-18,gain,yes,-0.00000898,0.00000554,-1.621928409,0.10583524,neg,ns,0.001084619,0.001622286,0.668574608,0.504264398,pos,ns,0.297341693,0.0000832,0.0000558,1.490555411,0.137095033,pos,ns,0.075801375,Foxg1,Foxg1_threeUTR,12,49386045,49386094,49386045,49386046,50,+,CGTTTGTTCAGTCTCTAGGGTTGTTTATTATTCTAACAAGGTGTGGAGTG,3' UTR,12,49382883,49386855,3973,1,Foxg1-204,3162,Foxg1-202;Foxg1-203;Foxg1-204;Foxg1-201;Gm43517-201,Foxg1;Foxg1;Foxg1;Foxg1;Gm43517,0;3245;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,27,15228,ENSMUSG00000020950,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
4343,cg05052242,0.00000595,0.0000121,0.49093873,0.623817137,gain,ns,0.0000334,0.0000206,1.621881519,0.105845286,pos,ns,0.009943582,0.00603329,1.648119468,0.100341257,pos,ns,0.998520463,-0.000341409,0.000207484,-1.645467503,0.100886939,neg,ns,0.509965372,Opcml,Opcml_Intron,9,28428710,28428759,28428758,28428759,50,+,TTTGCAACAGAACCTAACAAATTCTAAAACCAGATAAATCCAATTACCCG,"Intron (Opcml-202/Opcml, intron 2 of 7)",9,27790947,28925410,1134464,1,Opcml-202,637763,Opcml-202;Opcml-201;Opcml-204;Opcml-208,Opcml;Opcml;Opcml;Opcml,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,12,330908,ENSMUSG00000062257,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10408,cg09780763,-0.0000157,0.00000586,-2.677179129,0.007819776,loss,ns,0.0000162,0.00000996,1.621841793,0.105853799,pos,ns,0.000749446,0.002917673,0.256864422,0.797453832,pos,ns,0.098294451,-0.000101239,0.000100339,-1.008975524,0.313773258,neg,ns,0.876846653,Aff4,Aff4_Exon,11,53372305,53372354,53372305,53372306,50,+,CGTATTCAGAGTATGCTTGGAAACTACGATGAAATGAAGGATTTCATAGG,"Exon (Aff4-201/Aff4, exon 3 of 21)",11,53350833,53421830,70998,1,Aff4-201,21472,Aff4-201;Aff4-207;Aff4-205;Aff4-204;Aff4-206;Aff4-203,Aff4;Aff4;Aff4;Aff4;Aff4;Aff4,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,93736,ENSMUSG00000049470,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8373,cg20003152,0.00000366,0.00000538,0.680317521,0.496811196,gain,ns,-0.0000148,0.00000913,-1.62183292,0.1058557,neg,ns,0.001149422,0.002676053,0.429521485,0.667842141,pos,ns,0.17532618,-0.000124331,0.000092,-1.350998042,0.177681272,neg,ns,0.907788549,Zeb2,Zeb2_Intron,2,45059114,45059163,45059162,45059163,50,-,AACAATAAAACCTCAAACGGAGTAAACCAGGGCAGTGCTGAAGGTAGGCG,"Intron (Zeb2-212/Zeb2, intron 3 of 10)",2,44983632,45117395,133764,2,Zeb2-212,58232,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-218;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25753,cg25473870,0.00000496,0.00000554,0.895220165,0.371363974,gain,ns,-0.0000153,0.00000941,-1.621791334,0.105864611,neg,ns,-0.006258491,0.002757129,-2.26993048,0.023898169,neg,ns,1.62163537,0.0000606,0.0000948,0.639126412,0.52321266,pos,ns,0.785766581,Zbtb41,Zbtb41_Exon,1,139423477,139423526,139423477,139423478,50,+,CGGCAGTAGTTATTTTCATGCGTGTTTGAGCAAAAATCCAAGCACTGATG,"Exon (Zbtb41-203/Zbtb41, exon 2 of 9)",1,139422288,139441857,19570,1,Zbtb41-203,1189,Zbtb41-203;Zbtb41-201;Zbtb41-202,Zbtb41;Zbtb41;Zbtb41,0;0;-128,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,226470,ENSMUSG00000033964,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U4,Pr-F
4841,cg02135871,0.00000255,0.00000405,0.631099758,0.528440327,gain,ns,0.0000111,0.00000687,1.621777085,0.105867665,pos,ns,0.004192929,0.002013762,2.082137215,0.038149804,pos,ns,1.418507688,-0.000111945,0.0000693,-1.616457959,0.10701248,neg,ns,0.926110052,Phc3,Phc3_Exon,3,30942585,30942634,30942633,30942634,50,-,TTTGGTGGACCATTCTGTGAGCTAGATAATACACCCAACTTCTGGCTGCG,"Exon (Phc3-209/Phc3, exon 7 of 15)",3,30899371,30969401,70031,2,Phc3-209,26767,Phc3-209;Phc3-201;Phc3-204;Phc3-208;Phc3-202;Phc3-206;Phc3-210;Phc3-203,Phc3;Phc3;Phc3;Phc3;Phc3;Phc3;Phc3;Phc3,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,8,241915,ENSMUSG00000037652,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2091,cg22746319,-0.000000429,0.00000408,-0.104984585,0.916455935,loss,ns,-0.0000112,0.00000693,-1.620909821,0.106053654,neg,ns,-0.000586508,0.002031689,-0.28868019,0.773019061,neg,ns,0.111809797,0.0000519,0.0000699,0.742386329,0.458415437,pos,ns,0.904553311,Skida1,Skida1_Intron,2,18041448,18041497,18041448,18041449,50,-,CGGCAGCTGGAAAGGACTGAACGCCTTGTTTTTGAAACTGTCAATTCCCT,"Intron (Skida1-205/Skida1, intron 1 of 1)",2,18040676,18044572,3897,2,Skida1-205,3075,A930004D18Rik-201;Skida1-205;Skida1-202;Skida1-201,A930004D18Rik;Skida1;Skida1;Skida1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,31,72668,ENSMUSG00000054074,mapped to different genes,2,18041339,18041449,111,*,111,9,0.720720721,0.726545455,0.081081081,0.00000221,CpGisland,TRUE,U8,En-Pd
26025,cg26961425,-0.00000132,0.00000227,-0.57853126,0.563325562,loss,ns,0.00000626,0.00000386,1.620846793,0.106067181,pos,ns,0.002764251,0.001131603,2.442773964,0.015132887,pos,ns,1.820078223,-0.0000947,0.0000389,-2.43292176,0.015542802,neg,ns,0.948157743,Etnk1,Etnk1_Intron,6,143192846,143192895,143192894,143192895,50,+,CTTCATCTGCTACAGATTAGGTATGCCATTGTTGCTGCCATGTGGCGGCG,"Intron (Etnk1-203/Etnk1, intron 4 of 7)",6,143167221,143218497,51277,1,Etnk1-203,25625,Etnk1-203;Etnk1-201;Etnk1-202;Etnk1-204,Etnk1;Etnk1;Etnk1;Etnk1,0;0;25592;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,10,75320,ENSMUSG00000030275,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
6855,cg04376066,0.0000397,0.00000512,7.754056663,1.29E-13,gain,yes,-0.0000141,0.0000087,-1.620744002,0.106089244,neg,ns,0.008499629,0.002548109,3.335662154,0.000954377,pos,ns,3.020279931,-0.00030631,0.0000876,-3.495518896,0.000542165,neg,ns,0.058739305,Nr6a1,Nr6a1_Exon,2,38823486,38823535,38823534,38823535,50,+,CATCACCCCCATCCCCTTTTGACAAAGATCCAACTGTAAAAAGTCTTACG,"Exon (Nr6a1os-201/Nr6a1os-201, exon 1 of 2)",2,38723370,38927688,204319,2,Nr6a1-202,104153,Nr6a1-202;Nr6a1-201;Nr6a1-208,Nr6a1;Nr6a1;Nr6a1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,12,14536,ENSMUSG00000063972,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
19149,cg13356791,-0.00000187,0.000000835,-2.234005065,0.026195588,loss,ns,0.0000023,0.00000142,1.620671274,0.106104857,pos,ns,0.000319979,0.000415736,0.769668019,0.442082915,pos,ns,0.354496269,-0.00000554,0.0000143,-0.387324735,0.698781597,neg,ns,0.025939694,Emsy,Emsy_fiveUTR,7,98656479,98656528,98656479,98656480,50,-,CGGCCTTTCGGGGCTCATCTAAAAGGCTCCTCCGCCAAGACTAGGGGACA,Promoter (<=1kb),7,98587137,98656779,69643,2,Emsy-202,251,Emsy-202;Emsy-207;Emsy-201;Emsy-211;Emsy-210;Emsy-209,Emsy;Emsy;Emsy;Emsy;Emsy;Emsy,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,16,233545,ENSMUSG00000035401,conserved gene and region,7,98656479,98656653,175,*,175,16,0.611428571,0.988700565,0.091428571,6.88E-12,CpGisland,TRUE,U1,Pr-A
17667,cg26841850,-0.00000375,0.00000107,-3.503121776,0.000527499,loss,ns,0.00000295,0.00000182,1.620568467,0.106126931,pos,ns,0.000840559,0.000532612,1.578183448,0.115543313,pos,ns,0.937255186,-0.0000265,0.0000183,-1.447917431,0.148650729,neg,ns,0.041442002,Ssbp2,Ssbp2_Exon,13,91370881,91370930,91370881,91370882,50,-,CGTGGAAGGTGAACGTACCCCACACAGGAGAAGTTTGATGTTGACAAACT,"Exon (A830009L08Rik-201/A830009L08Rik-201, exon 3 of 3)",13,91460283,91688866,228584,1,Ssbp2-209,-89402,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,18,66970,ENSMUSG00000003992,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
23683,cg12975385,0.000000178,0.00000301,0.059098441,0.952911779,gain,ns,-0.00000828,0.00000511,-1.620555752,0.106129661,neg,ns,0.002706338,0.00149674,1.808155472,0.071551295,pos,ns,1.145382499,-0.00014775,0.0000515,-2.870450763,0.004380819,neg,ns,0.923130236,Ptpn4,Ptpn4_Exon,1,119802396,119802445,119802396,119802397,50,+,CGGGCCAACTCTGATGCTCGTACATTGTAGGTTCTGCCAGCAGGCAATCG,Promoter (<=1kb),1,119743405,119802422,59018,2,Ptpn4-210,0,Ptpn4-201;Ptpn4-203;Ptpn4-210;Ptpn4-207;Ptpn4-209;Ptpn4-205;Ptpn4-204,Ptpn4;Ptpn4;Ptpn4;Ptpn4;Ptpn4;Ptpn4;Ptpn4,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,5,19258,ENSMUSG00000026384,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19338,cg18872458,-0.00000927,0.00000309,-3.005186496,0.002870851,loss,ns,0.00000849,0.00000524,1.62054253,0.1061325,pos,ns,0.002175388,0.001535665,1.416577262,0.157610644,pos,ns,0.802414457,-0.000149267,0.0000528,-2.826423056,0.005012885,neg,ns,0.936017683,Cdh8,Cdh8_threeUTR,8,99029925,99029974,99029925,99029926,50,+,CGAACATGTGAATATTTTAAGGCTCGACACAATATTTAAAGATGCTATTC,3' UTR,8,99024471,99416427,391957,2,Cdh8-207,386453,Cdh8-207;Cdh8-204;Cdh8-201;Cdh8-206;Cdh8-203,Cdh8;Cdh8;Cdh8;Cdh8;Cdh8,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,16,12564,ENSMUSG00000036510,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27553,cg17803853,-0.00000189,0.00000327,-0.577621012,0.563939311,loss,ns,-0.00000901,0.00000556,-1.620402663,0.106162537,neg,ns,-0.000507836,0.001628685,-0.311807485,0.755396439,neg,ns,0.121825067,-0.0000342,0.000056,-0.610859377,0.541740297,neg,ns,0.958960348,Tshz2,Tshz2_Intron,2,169832310,169832359,169832358,169832359,50,-,TCCTTTATCTTTGTCAGTGATTCAAAGACATGATTTATGGTTAGTCTCCG,"Intron (Tshz2-202/Tshz2, intron 1 of 2)",2,169633013,169913093,280081,1,Tshz2-202,199297,Tshz2-202;Tshz2-201,Tshz2;Tshz2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,21,30,228911,ENSMUSG00000047907,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16841,cg21631613,-0.00000316,0.00000192,-1.64303554,0.101389438,loss,ns,-0.0000053,0.00000327,-1.620330627,0.10617801,neg,ns,-0.001191373,0.000957633,-1.244080584,0.214409757,neg,ns,0.668755455,0.0000106,0.0000329,0.32047063,0.748827501,pos,ns,0.946299113,Lrba,Lrba_threeUTR,3,86746128,86746177,86746128,86746129,50,-,CGCATGAAGTACTGTCAGGATAATATTGGATCTTTTCATCACTCAGACTT,3' UTR,3,86224680,86746712,522033,1,Lrba-202,521448,Lrba-202;Lrba-204;Lrba-201;Lrba-206,Lrba;Lrba;Lrba;Lrba,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,45,80877,ENSMUSG00000028080,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2952,cg09687776,0.00000761,0.00000935,0.814166467,0.416174549,gain,ns,0.0000257,0.0000159,1.620329745,0.106178199,pos,ns,0.007625448,0.004652571,1.638975174,0.102232864,pos,ns,0.990409472,-0.0000816,0.000160002,-0.509976036,0.610431137,neg,ns,0.62595836,Lrmda,Lrmda_Intron,14,22152683,22152732,22152683,22152684,50,-,CGTAGAGCCGGCATTGATTTTTCTTGATGTTGAGCAACAGCAAACCTTAA,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,132971,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206,Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15352,cg11717789,-0.0000017,0.00000247,-0.687170966,0.492488747,loss,ns,-0.0000068,0.00000419,-1.62012626,0.106221916,neg,ns,-0.000275623,0.001228771,-0.224308296,0.822665188,neg,ns,0.08477688,0.0000172,0.0000423,0.407182723,0.684154804,pos,ns,0.927874666,Psmd11,Psmd11_threeUTR,11,80462606,80462655,80462654,80462655,50,+,TCTAGCCCAGAAGATGTCCAGGCTTTGGTGAGCGGGAAGCTTGCACTTCG,Promoter (<=1kb),11,80462611,80473248,10638,1,Psmd11-213,0,Psmd11-214;Psmd11-201;Psmd11-204;Psmd11-208;Psmd11-215;Psmd11-209;Psmd11-205;Psmd11-203;Psmd11-213;Psmd11-202,Psmd11;Psmd11;Psmd11;Psmd11;Psmd11;Psmd11;Psmd11;Psmd11;Psmd11;Psmd11,0;0;0;33941;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,4,69077,ENSMUSG00000017428,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5988,cg18242147,-0.00000957,0.00000261,-3.664021257,0.000291945,loss,ns,-0.00000719,0.00000444,-1.620042061,0.10624001,neg,ns,-0.003619642,0.001300522,-2.783222989,0.005712514,neg,ns,2.243172756,0.0000583,0.0000447,1.303390499,0.193408653,pos,ns,0.961209603,Dab2ip,Dab2ip_threeUTR,2,35719889,35719938,35719889,35719890,50,+,CGAAAACAAGGACTTGTTTTTTGTCACAAGGTCCTCCGGGGTCCAGCCCT,3' UTR,2,35558266,35730994,172729,1,Dab2ip-205,161623,Dab2ip-205;Dab2ip-206;Dab2ip-209;Dab2ip-211;Dab2ip-202;Dab2ip-207;Dab2ip-203;Dab2ip-201;Dab2ip-208;Dab2ip-204;Dab2ip-213,Dab2ip;Dab2ip;Dab2ip;Dab2ip;Dab2ip;Dab2ip;Dab2ip;Dab2ip;Dab2ip;Dab2ip;Dab2ip,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,9,12,69601,ENSMUSG00000026883,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19357,cg08443188,-0.0000376,0.0000184,-2.042347261,0.041962923,loss,ns,0.0000507,0.0000313,1.619598677,0.10633533,pos,ns,-0.015327351,0.009171786,-1.67114138,0.095702901,neg,ns,1.019074897,0.000891178,0.000315417,2.825395768,0.005028576,pos,ns,0.366197637,Foxp1,Foxp1_Intron,6,99095593,99095642,99095593,99095594,50,-,CGTGTTTCAGCAGTCTGACTTTTATTGGCATGAAATTGGTACAAATATTA,"Intron (Foxp1-206/Foxp1, intron 3 of 17)",6,98925338,99266515,341178,2,Foxp1-206,170873,Foxp1-206;Foxp1-204;Foxp1-220;Foxp1-201;Foxp1-205;Foxp1-207;Foxp1-208;Foxp1-226;Foxp1-228;Foxp1-221;Foxp1-222;Foxp1-218;Foxp1-223,Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,87,108655,ENSMUSG00000030067,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19711,cg00737936,-0.00000288,0.0000025,-1.150927326,0.250649097,loss,ns,0.00000689,0.00000425,1.619533519,0.106349343,pos,ns,0.001732431,0.00124638,1.38996985,0.165535311,pos,ns,0.781109351,-0.0000597,0.0000429,-1.393892627,0.164348386,neg,ns,0.936322065,Dlg3,Dlg3_Exon,X,100808092,100808141,100808092,100808093,50,-,CGAAAGTTTCCATTTTACAAGAGCAAAGAAAACATGGCCCAGGAGAGCAG,"Exon (Dlg3-206/Dlg3, exon 12 of 19)",20,100767722,100818406,50685,1,Dlg3-201,40370,Dlg3-201;Dlg3-204;Dlg3-202;Dlg3-206;Dlg3-203;Dlg3-208;Dlg3-207;Dlg3-205,Dlg3;Dlg3;Dlg3;Dlg3;Dlg3;Dlg3;Dlg3;Dlg3,0;0;0;0;0;0;11515;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,11,53310,ENSMUSG00000000881,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1739,cg24437232,-0.00000444,0.00000413,-1.073010674,0.284100883,loss,ns,0.0000114,0.00000702,1.619482578,0.1063603,pos,ns,0.005464278,0.002057701,2.655525487,0.008327806,pos,ns,2.079469421,-0.000184772,0.0000708,-2.611094788,0.009464122,neg,ns,0.930108557,Gm5513,Gm5513_Intergenic_downstream,19,14915355,14915404,14915355,14915356,50,+,CGAGAGCCCCGAACATAATAAAATCAGATTATGAAGGCAATCATATTTAC,Distal Intergenic,19,14959549,14960766,1218,2,Gm5513-201,45362,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,22,433225,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14859,cg00980719,-0.00000823,0.00000345,-2.384967541,0.017681378,loss,ns,-0.00000949,0.00000587,-1.618680494,0.106532939,neg,ns,-0.003733273,0.001718294,-2.172661914,0.030563039,neg,ns,1.514803465,0.0000306,0.0000591,0.518040294,0.60479967,pos,ns,0.927086609,Phf12,Phf12_Exon,11,78023521,78023570,78023521,78023522,50,-,CGTCGGCATCATTGTGAAGACAGAGAATGCCACTGGCCCCAGCTCTTGCC,"Exon (Phf12-202/Phf12, exon 9 of 11)",11,77982754,78026214,43461,1,Phf12-202,40767,Phf12-202;Phf12-201;Phf12-207;Phf12-206;Phf12-208;Phf12-205;Phf12-203;Phf12-204,Phf12;Phf12;Phf12;Phf12;Phf12;Phf12;Phf12;Phf12,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,14,27,268448,ENSMUSG00000037791,conserved gene and region,11,78023412,78023525,114,*,114,10,0.692982456,0.786206897,0.087719298,0.000000223,CpGisland,TRUE,U10,Tr-S
2757,cg08500704,0.0000344,0.0000183,1.882100318,0.060758986,gain,ns,0.0000502,0.000031,1.618652892,0.106538884,pos,ns,-0.00251223,0.009090917,-0.276345019,0.782467227,neg,ns,0.106533844,0.000515775,0.000312636,1.649763138,0.100004235,pos,ns,0.377084082,Prdm13,Prdm13_Intron,4,21680420,21680469,21680420,21680421,50,-,CGCCTCATTACCAGGCGAGACAATATCCTGTATGTATAGGCCATATGTAA,"Intron (Prdm13-205/Prdm13, intron 3 of 3)",4,21677480,21685963,8484,2,Prdm13-205,5494,Prdm13-205;Prdm13-201;Prdm13-202;Prdm13-203;Prdm13-206;Prdm13-204,Prdm13;Prdm13;Prdm13;Prdm13;Prdm13;Prdm13,0;0;0;0;0;5376,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,23,230025,ENSMUSG00000040478,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
6087,cg07846083,0.0000211,0.00000476,4.439106663,0.0000126,gain,ns,0.0000131,0.00000808,1.618401981,0.106592938,pos,ns,-0.000886019,0.002366798,-0.374353338,0.70839739,neg,ns,0.149723048,0.000141373,0.0000814,1.736896117,0.083398825,pos,ns,0.104199038,Ttll11,Ttll11_Intergenic_upstream,2,36011575,36011624,36011575,36011576,50,+,CGCCGCACTATAATTTTCCAAACAGGATCTTGCAATCAGGGCCTTATTCA,Distal Intergenic,2,35902351,35979913,77563,2,Ttll11-203,-31662,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,7,74410,ENSMUSG00000026885,mapped to different genes,2,36011338,36011579,242,*,242,25,0.669421488,0.936387556,0.103305785,1.00E-19,CpGisland,TRUE,U3,Pr-B
20891,cg05798256,0.00015191,0.00000935,16.24519613,2.31E-43,gain,yes,0.0000257,0.0000159,1.618258956,0.10662376,pos,ns,0.002320174,0.004654118,0.498520577,0.61847069,pos,ns,0.208680877,0.000442535,0.000160055,2.764896808,0.006035172,pos,ns,0.274793624,Pax6,Pax6_Exon,2,105683872,105683921,105683872,105683873,50,+,CGGCCACTGCCGGACTCCACCCGGCAGAAGATTGTAGAGCTAGCTCACAG,"Exon (Pax6-206/Pax6, exon 4 of 13)",2,105668900,105697364,28465,1,Pax6-206,14972,Pax6-206;Pax6-207;Pax6-210;Pax6-214;Pax6-208;Pax6-202;Pax6-205;Pax6-225;Pax6-204;Pax6-201;Pax6-203;Pax6-224;Pax6-219;Pax6-221;Pax6-213;Pax6-211;Pax6-222;Pax6-212;Pax6-215;Pax6-223;Pax6-209;Pax6-216,Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,31,78,18508,ENSMUSG00000027168,conserved gene but different region,2,105683814,105684069,256,*,256,19,0.62109375,0.818855219,0.07421875,2.40E-12,CpGisland,TRUE,U13,Hc-P
24441,cg16331496,-0.0000134,0.00000466,-2.887356151,0.004158066,loss,ns,-0.0000128,0.00000791,-1.618256208,0.106624352,neg,ns,-0.003004608,0.002317021,-1.296754793,0.195679949,neg,ns,0.708453673,-0.0000696,0.0000797,-0.87386815,0.38286651,neg,ns,0.812315332,Map7d1,Map7d1_Exon,4,126238544,126238593,126238544,126238545,50,+,CGTGGCAGAGGACTTTGAGAGCCGCTTGTTGATTATAGAGTCCACGTGTT,"Exon (Map7d1-203/Map7d1, exon 6 of 18)",4,126232167,126240111,7945,2,Map7d1-204,1518,Map7d1-204;Map7d1-203;Map7d1-201;Map7d1-202;Map7d1-206;Map7d1-205,Map7d1;Map7d1;Map7d1;Map7d1;Map7d1;Map7d1,0;0;0;0;-4996;-3768,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,245877,ENSMUSG00000028849,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14973,cg25352707,0.000000987,0.00000193,0.510661093,0.609951837,gain,ns,0.00000532,0.00000329,1.618019055,0.106675474,pos,ns,0.001385524,0.000962456,1.43957165,0.15099764,pos,ns,0.82102984,0.0000139,0.0000331,0.420100837,0.674702817,pos,ns,0.953914883,Ttc29,Ttc29_Intron,8,78271978,78272027,78271978,78271979,50,-,CGGGCGCAAGCATCAGTAATACAGGAATGTTATATGGCTTTAGTTTGGGC,"Intron (Ttc29-201/Ttc29, intron 7 of 13)",8,78213342,78394326,180985,1,Ttc29-201,58636,Ttc29-201;Ttc29-202;Ttc29-207,Ttc29;Ttc29;Ttc29,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,3,73301,ENSMUSG00000037101,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12643,cg22710091,-0.0000654,0.0000125,-5.245984873,0.000000289,loss,yes,0.0000342,0.0000212,1.617892103,0.106702849,pos,ns,-0.015114859,0.006200129,-2.437829708,0.015337388,neg,ns,1.814248587,0.000295663,0.000213222,1.386642498,0.166547147,pos,ns,0.710387687,Gm19077,Gm19077_Intergenic_downstream,15,66324749,66324798,66324749,66324750,50,-,CGAGGCACCTTGAGAATGACAAATGGCGATTTCAATGATGAAAATAGAAA,Distal Intergenic,15,66357521,66358484,964,2,Gm19077-201,33735,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,100418214,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7253,cg02764578,0.0000153,0.0000327,0.46738492,0.640552872,gain,ns,-0.00009,0.0000556,-1.617865291,0.106708631,neg,ns,-0.01488565,0.016298384,-0.913320613,0.36178371,neg,ns,0.441550992,0.00000813,0.0005605,0.014510252,0.988432234,pos,ns,0.712330151,Nkx3-2,Nkx3-2_Intergenic_downstream,5,41750397,41750446,41750397,41750398,50,+,CGGAGAATTAGAAATGGTAATTTTCCGTCATTATGGCTGAAATGCGATCT,Distal Intergenic,5,41761483,41764501,3019,2,Nkx3-2-201,14055,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,3,12020,ENSMUSG00000049691,mapped to different genes,5,41750397,41750559,163,*,163,10,0.423312883,1.383701189,0.061349693,0.0000058,CpGisland,TRUE,U13,Hc-P
19895,cg11466492,0.000141548,0.0000141,10.00433264,1.33E-20,gain,yes,-0.0000389,0.000024,-1.617716089,0.106740812,neg,ns,0.049812036,0.00704193,7.07363444,1.01E-11,pos,yes,10.99640893,-0.00284861,0.000242171,-11.76278651,1.17E-26,neg,yes,0.828073607,Atp1a1,Atp1a1_Exon,3,101579863,101579912,101579863,101579864,50,-,CGTTCTCAGCCAGAATCACAAAGTAAGTAAAGAAGCCTCCCAGGGCCTGG,"Exon (Atp1a1-201/Atp1a1, exon 19 of 23)",3,101576219,101604684,28466,2,Atp1a1-201,24772,Atp1a1-201;Atp1a1-202,Atp1a1;Atp1a1,0;-2303,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,11928,ENSMUSG00000033161,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8412,cg24250511,0.0000551,0.00001,5.511948988,7.48E-08,gain,yes,-0.0000275,0.000017,-1.617668482,0.106751081,neg,ns,0.008720274,0.004976385,1.75233127,0.080705521,pos,ns,1.093096756,-0.000399619,0.000171137,-2.335073577,0.020177489,neg,ns,0.200669707,Zeb2,Zeb2_Intron,2,45103282,45103331,45103330,45103331,50,+,CTTTCTTTTCATCTTGGCTTTCTGTGGCAGAATGCAAATGGAGCCTGCCG,"Intron (Zeb2-212/Zeb2, intron 3 of 10)",2,44983632,45117395,133764,2,Zeb2-212,14064,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219;Zeb2-211;Zeb2-210;Zeb2-205;Zeb2-223;Zeb2-217;Zeb2-225;Zeb2-204,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;6745;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17023,cg04176022,0.00000464,0.00000268,1.731610256,0.084337809,gain,ns,-0.00000736,0.00000455,-1.617648282,0.106755439,neg,ns,-0.002595964,0.001332835,-1.947701352,0.05235318,neg,ns,1.281056932,0.0000328,0.0000458,0.716239934,0.474382407,pos,ns,0.896828887,Dgkd,Dgkd_Exon,1,87941398,87941447,87941446,87941447,50,-,GCCTGGCTGGAGCACCTCAGTCTCTGTGAGTATAAGGACATCTTCACACG,"Exon (Dgkd-201/Dgkd, exon 29 of 30)",1,87853287,87944490,91204,1,Dgkd-201,88111,Dgkd-201;Dgkd-202;Dgkd-205;Dgkd-204;Dgkd-203;Usp40-207;Usp40-201;Usp40-204;Usp40-206,Dgkd;Dgkd;Dgkd;Dgkd;Dgkd;Usp40;Usp40;Usp40;Usp40,0;9416;0;6115;0;34451;67104;67087;67087,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,227333,ENSMUSG00000070738,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20112,cg06748976,0.000012,0.00000547,2.18763698,0.029442596,gain,ns,0.000015,0.00000929,1.617585013,0.106769089,pos,ns,0.00702712,0.00272141,2.582161139,0.010276933,pos,ns,1.988136463,-0.000107912,0.0000936,-1.153043707,0.249780733,neg,ns,0.088081946,Atp5g2,Atp5g2_fiveUTR,15,102672184,102672233,102672184,102672185,50,-,CGCCCCGGCCCCGAGCTCCTCCATTTAATCGGATTTGGGAGAAGGGGAGG,Promoter (<=1kb),15,102665801,102672352,6552,2,Atp5g2-203,119,Atp5g2-202;Atp5g2-201;Atp5g2-204;Atp5g2-203,Atp5g2;Atp5g2;Atp5g2;Atp5g2,-1057;-4435;-4441;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,8,18,67942,ENSMUSG00000062683,mapped to different genes,15,102672078,102672489,412,*,412,37,0.621359223,0.940117176,0.089805825,1.33E-26,CpGisland,TRUE,U1,Pr-A
10824,cg20814160,-0.00000145,0.00000274,-0.528235911,0.597713539,loss,ns,-0.00000753,0.00000466,-1.617518788,0.106783378,neg,ns,-0.0001545,0.001364244,-0.113249488,0.909906066,neg,ns,0.04100344,-0.00000151,0.0000469,-0.032132729,0.974386881,neg,ns,0.90624588,Fam193b,Fam193b_Exon,13,55549159,55549208,55549159,55549160,50,+,CGCTGTTGGGGACTTTGGGCTCCGTGCTGTTGATGAATTCCAGCAGCTCA,"Exon (Fam193b-201/Fam193b, exon 7 of 11)",13,55539316,55571100,31785,2,Fam193b-206,21892,Fam193b-206;Fam193b-201;Fam193b-204;Fam193b-203,Fam193b;Fam193b;Fam193b;Fam193b,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,11,212483,ENSMUSG00000021495,conserved gene but different region,13,55549137,55549352,216,*,216,14,0.652777778,0.612145749,0.064814815,1.86E-08,CpGisland,TRUE,U10,Tr-S
13387,cg05086365,0.000279481,0.0000156,17.87765854,1.28E-49,gain,yes,-0.000043,0.0000266,-1.617476985,0.106792399,neg,ns,0.001988262,0.007780702,0.255537576,0.79847739,pos,ns,0.097737377,-0.0000152,0.000267578,-0.056695683,0.954824138,neg,ns,0.400629149,Nr2f2,Nr2f2_Exon,7,70357834,70357883,70357882,70357883,50,-,TCCACTTGCTCTTGGAAGATCCGTATGTGGTCCATAAAGGCGACCACCCG,"Exon (Nr2f2-201/Nr2f2, exon 2 of 3)",7,70351944,70360593,8650,2,Nr2f2-201,2710,Nr2f2-201;Nr2f2-203;Nr2f2-202;Nr2f2-205;Nr2f2-204;Nr2f2-206,Nr2f2;Nr2f2;Nr2f2;Nr2f2;Nr2f2;Nr2f2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,24,69,11819,ENSMUSG00000030551,conserved gene and region,7,70357855,70358250,396,*,396,31,0.626262626,0.821961835,0.078282828,1.66E-20,CpGisland,TRUE,NA,NRS
25571,cg07910324,0.00000118,0.00000189,0.624947131,0.532465481,gain,ns,-0.00000519,0.00000321,-1.617389578,0.106811262,neg,ns,-0.000212057,0.000940634,-0.225439936,0.821785592,neg,ns,0.085241477,0.0000145,0.0000323,0.4482315,0.654299241,pos,ns,0.977155814,Jag1,Jag1_Intergenic_upstream,2,137248128,137248177,137248128,137248129,50,+,CGCAACATAAAAGCACGTAAATTGGTTCCAGCCATCTCTAGTAAAAACTT,Distal Intergenic,2,137081456,137116644,35189,2,Jag1-201,-131484,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,16,16449,ENSMUSG00000027276,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10798,cg00557468,0.0000522,0.00000618,8.457362247,1.09E-15,gain,yes,0.000017,0.0000105,1.617302188,0.106830125,pos,ns,0.008039364,0.00307462,2.614750228,0.009365642,pos,ns,2.028462432,0.000123464,0.000105736,1.167662073,0.243840399,pos,ns,0.194470219,Prr7,Prr7_threeUTR,13,55472952,55473001,55473000,55473001,50,-,GTCTCCATCCCCTTGTTCGGGAGGACTACAGCCGTATAGAGGGGCGCCCG,3' UTR,13,55464267,55473154,8888,1,Prr7-201,8685,Dbn1-201;Dbn1-203;Dbn1-202;Dbn1-206;Prr7-201,Dbn1;Dbn1;Dbn1;Dbn1;Prr7,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,6,432763,ENSMUSG00000034686,conserved gene and region,13,55471446,55473041,1596,*,1596,178,0.713032582,0.884290343,0.111528822,1.30E-143,CpGisland,TRUE,U3,Pr-B
292,cg17834517,-0.000000039,0.00000188,-0.020811187,0.983409662,loss,ns,-0.00000515,0.00000319,-1.617193486,0.106853591,neg,ns,0.004296552,0.000933664,4.601818552,0.00000611,pos,ns,5.213618699,-0.0001371,0.0000321,-4.269873703,0.000026,neg,ns,0.957805194,Glyr1,Glyr1_Exon,16,5026519,5026568,5026567,5026568,50,-,TGCGGTTCCAGACAGTCACTGTGTGACCCATTTTTAGCAAGTTGGAGACG,"Exon (Glyr1-202/Glyr1, exon 10 of 16)",16,5013909,5049857,35949,2,Glyr1-202,23289,Glyr1-202;Glyr1-201;Glyr1-205,Glyr1;Glyr1;Glyr1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,74022,ENSMUSG00000022536,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16403,cg12656548,-0.000000128,0.00000214,-0.059820067,0.952337488,loss,ns,-0.00000587,0.00000363,-1.617168651,0.106858953,neg,ns,-0.002324136,0.001063234,-2.185911273,0.029569878,neg,ns,1.52915047,0.0000776,0.0000366,2.121750085,0.034651736,pos,ns,0.935190736,Ggnbp2,Ggnbp2_Exon,11,84841380,84841429,84841428,84841429,50,+,AAGCGCTAGATAGCCCATTCTAGCAAATTACATACTCATACCCTCCTGCG,"Exon (Ggnbp2-213/Ggnbp2, exon 7 of 14)",11,84832361,84870738,38378,2,Ggnbp2-213,29309,Ggnbp2-213;Ggnbp2-203;Ggnbp2-211;Ggnbp2-206;Ggnbp2-201;Ggnbp2-202;Ggnbp2-204;Ggnbp2-212;Ggnbp2-210,Ggnbp2;Ggnbp2;Ggnbp2;Ggnbp2;Ggnbp2;Ggnbp2;Ggnbp2;Ggnbp2;Ggnbp2,0;0;0;0;0;0;-4912;0;-3396,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,217039,ENSMUSG00000020530,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23088,cg22384139,0.00000113,0.00000348,0.323775501,0.74632633,gain,ns,0.00000956,0.00000591,1.61708754,0.106876466,pos,ns,0.002897019,0.001731494,1.67313303,0.095309875,pos,ns,1.020862102,-0.0000744,0.0000595,-1.24964546,0.212371724,neg,ns,0.926104283,Rnf220,Rnf220_Exon,4,117285083,117285132,117285131,117285132,50,+,GTGATAAATGCATAACCGTCCCTTTAATATTTTATGCAGGTGCTAACGCG,"Exon (Rnf220-210/Rnf220, exon 4 of 4)",4,117271463,117497052,225590,2,Rnf220-201,211920,Rnf220-201;Rnf220-203;Rnf220-212;Rnf220-202;Rnf220-205;Rnf220-209;Rnf220-213;Rnf220-210;Rnf220-206;Rnf220-208,Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,15,152,66743,ENSMUSG00000028677,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16292,cg00380167,-0.00000199,0.00000175,-1.132135768,0.25845231,loss,ns,-0.00000482,0.00000298,-1.617085092,0.106876994,neg,ns,-0.001620563,0.000873291,-1.855697836,0.06444558,neg,ns,1.190806862,0.0000167,0.00003,0.555529031,0.578933534,pos,ns,0.966309545,Lrpprc,Lrpprc_Exon,17,84716593,84716642,84716641,84716642,50,+,TAATGTGACGTAAAGGTCAAGCATTGTGACATACCTTTCAAATAATCCCG,"Exon (Lrpprc-201/Lrpprc, exon 31 of 38)",17,84705247,84790558,85312,2,Lrpprc-201,73916,Lrpprc-201;Lrpprc-207,Lrpprc;Lrpprc,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,15,72416,ENSMUSG00000024120,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7577,cg03337776,0.00000841,0.00000275,3.06313716,0.002382435,gain,ns,-0.00000754,0.00000466,-1.617010696,0.10689306,neg,ns,0.004763714,0.001366647,3.485694163,0.000561683,pos,ns,3.250508442,-0.000227336,0.000047,-4.837043158,0.00000208,neg,ns,0.933014946,Cpeb2,Cpeb2_threeUTR,5,43288826,43288875,43288874,43288875,50,+,GATGCTACAAAACTTGAATATAACACATTTTGGAAGGCTGACTAACCTCG,3' UTR,5,43233170,43289723,56554,1,Cpeb2-204,55656,Cpeb2-204;Cpeb2-201;Cpeb2-205,Cpeb2;Cpeb2;Cpeb2,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,11,231207,ENSMUSG00000039782,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26038,cg10913360,0.0000189,0.00000356,5.320190354,0.000000199,gain,yes,-0.00000978,0.00000605,-1.616946158,0.106906998,neg,ns,-0.002318323,0.001772627,-1.307846383,0.191894431,neg,ns,0.716937629,0.0000865,0.000061,1.418856652,0.156945424,pos,ns,0.846513021,Kcnq1,Kcnq1_Intron,7,143340783,143340832,143340783,143340784,50,-,CGAGCCCAGCCTGGCCCATGGTGGAAATGCAAATCTAATTAGTCTGGCAT,"Intron (Kcnq1-201/Kcnq1, intron 11 of 15)",7,143107254,143427042,319789,1,Kcnq1-201,233529,Kcnq1-201;Kcnq1-202,Kcnq1;Kcnq1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,9,16535,ENSMUSG00000009545,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1991,cg00297075,0.000000504,0.00000355,0.141949388,0.88721219,gain,ns,0.00000975,0.00000603,1.616675864,0.106965388,pos,ns,0.002287882,0.001767179,1.294651672,0.196403898,pos,ns,0.706849897,-0.00000425,0.0000608,-0.06990643,0.944313208,neg,ns,0.938022309,Foxb2,Foxb2_Promoter,19,16880132,16880181,16880132,16880133,50,-,CGAAACAGACCATTTAAATCAATTAGGACTGCTCTGATGGAAAATGAGGG,Promoter (6-7kb),19,16872319,16873805,1487,2,Foxb2-201,-6376,NA,NA,NA,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,3,3,14240,ENSMUSG00000056829,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
8831,cg20497123,-0.00000819,0.00000359,-2.281194145,0.02321498,loss,ns,0.00000985,0.0000061,1.616513046,0.107000574,pos,ns,0.000736962,0.001785872,0.412662471,0.680139175,pos,ns,0.16740221,-0.0000479,0.0000614,-0.779895478,0.43604743,neg,ns,0.048446118,Atxn1,Atxn1_Promoter,13,45965097,45965146,45965145,45965146,50,+,GTATGTAAATGTGTAATAGAAGCCAAATATGGAGCAGTTGGCTGCCGCCG,Promoter (<=1kb),13,45792329,45965008,172680,2,Atxn1-204,-89,Atxn1-201;Atxn1-202;Atxn1-203;Atxn1-204;Atxn1-206,Atxn1;Atxn1;Atxn1;Atxn1;Atxn1,0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,10,20238,ENSMUSG00000046876,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
9810,cg20983910,0.00000675,0.00000207,3.266952643,0.001209027,gain,ns,-0.00000567,0.00000351,-1.616297078,0.107047259,neg,ns,-0.003005767,0.001028308,-2.923021197,0.00372163,neg,ns,2.429266805,0.0000958,0.0000354,2.7096947,0.007109206,pos,ns,0.052640893,Sim1,Sim1_Intron,10,50902450,50902499,50902498,50902499,50,-,GACAATCAAAGGATTTGCGAATTTTCTGCGGTAGGTCAAGTGCAGAAACG,"Intron (Sim1-201/Sim1, intron 1 of 10)",10,50895651,50989152,93502,1,Sim1-201,6799,Sim1-202;Sim1-201,Sim1;Sim1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,8,20464,ENSMUSG00000019913,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
15074,cg10673821,0.0000119,0.00000101,11.84641171,5.87E-27,gain,yes,-0.00000276,0.00000171,-1.616145148,0.107080111,neg,ns,0.000892747,0.000500731,1.782886076,0.07558328,pos,ns,1.121574265,0.00000771,0.0000172,0.447487039,0.654835964,pos,ns,0.018163746,Zfp827,Zfp827_Promoter,8,79028243,79028292,79028243,79028244,50,+,CGCCGCTGCCCTTTGATCCCGACATTAGTGTTAGGGGCTCGGAGACACAG,Promoter (<=1kb),8,79028437,79071837,43401,1,Zfp827-201,-145,Zfp827-201;Zfp827-202;Zfp827-203;Zfp827-209,Zfp827;Zfp827;Zfp827;Zfp827,0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,10,28,622675,ENSMUSG00000071064,conserved gene and region,8,79028199,79028434,236,*,236,23,0.588983051,1.130833333,0.097457627,1.44E-17,CpGisland,TRUE,U1,Pr-A
11905,cg21579954,0.0000464,0.00000698,6.653522288,1.30E-10,gain,yes,-0.0000192,0.0000119,-1.616054746,0.107099662,neg,ns,0.008701,0.003472749,2.505507638,0.012740049,pos,ns,1.894828915,-0.000241841,0.000119428,-2.024997637,0.043724389,neg,ns,0.107894829,Tank,Tank_Intergenic_downstream,2,61656338,61656387,61656338,61656339,50,+,CGGGAAGAAAAGAGAAAAGCAGCAGGCTGATTACGAGGTGTCAAAACTGC,Distal Intergenic,2,61643831,61649977,6147,1,Tank-211,12507,Tank-205;Tank-201;Tank-206;Tank-203;Tank-204;Tank-202;Tank-208,Tank;Tank;Tank;Tank;Tank;Tank;Tank,0;0;0;0;0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,17,21353,ENSMUSG00000064289,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
12450,cg24849006,0.0000411,0.0000124,3.305647802,0.001058767,gain,ns,0.0000341,0.0000211,1.615999732,0.107111562,pos,ns,0.024811744,0.00618403,4.01222892,0.0000755,pos,ns,4.122278684,-0.000593224,0.000212668,-2.789431351,0.005606804,neg,ns,0.226813941,Onecut2,Onecut2_Intron,18,64349325,64349374,64349373,64349374,50,-,TATTGATCCAACCTTTCCCTTTAAGGAAACCACATAGTTAAAGACCCTCG,"Intron (Onecut2-201/Onecut2, intron 1 of 1)",18,64340020,64400987,60968,1,Onecut2-201,9305,Onecut2-201,Onecut2,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,19,225631,ENSMUSG00000045991,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22055,cg02208027,-0.00000685,0.00000491,-1.393709686,0.164403595,loss,ns,0.0000135,0.00000835,1.615911976,0.107130546,pos,ns,0.000534527,0.002446033,0.218528009,0.827161529,pos,ns,0.082409673,-0.00000673,0.0000841,-0.079981219,0.9363038,neg,ns,0.912761099,Sbf2,Sbf2_Exon,7,110428352,110428401,110428352,110428353,50,+,CGTGGAACTTTCTGGAATGCCATATGAGGATTTGGATTCTCCTGTAATAT,"Exon (Sbf2-205/Sbf2, exon 14 of 40)",7,110308013,110614922,306910,2,Sbf2-205,186521,Gm9064-201;Sbf2-205;Sbf2-201;Sbf2-208;Sbf2-206;Sbf2-214;Sbf2-203;Sbf2-211,Gm9064;Sbf2;Sbf2;Sbf2;Sbf2;Sbf2;Sbf2;Sbf2,3315;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,319934,ENSMUSG00000038371,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13320,cg26186397,0.00000307,0.00000153,2.006846918,0.045633952,gain,ns,-0.00000419,0.0000026,-1.615889878,0.107135326,neg,ns,-0.000685714,0.00076032,-0.901875728,0.36782306,neg,ns,0.434361047,0.00000806,0.0000261,0.308352027,0.75802158,pos,ns,0.967192941,Gm19082,Gm19082_Intron,16,70092177,70092226,70092177,70092178,50,+,CGATTGACAAGCAATTTAAGCTGGAGTGTGAAAGGATGCAGAAATAACAA,"Intron (Gm49655-201/Gm49655-201, intron 1 of 4)",16,70143165,70144272,1108,2,Gm19082-201,52046,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,100418225,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23131,cg00935831,0.000105245,0.0000148,7.117944829,7.65E-12,gain,yes,-0.0000406,0.0000251,-1.615402817,0.107240742,neg,ns,0.022865209,0.007359096,3.107067669,0.002064463,pos,ns,2.685192887,-0.00071755,0.000253079,-2.835282235,0.004879409,neg,ns,0.420509482,Rnf220,Rnf220_Intron,4,117317619,117317668,117317619,117317620,50,+,CGGCGGCTGAAATTGAATTGATAACTGCATCAACGTGCCAGATAACGCCT,"Intron (Rnf220-201/Rnf220, intron 2 of 14)",4,117271463,117497052,225590,2,Rnf220-201,179384,Rnf220-201;Rnf220-202;Rnf220-207,Rnf220;Rnf220;Rnf220,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,4,117317524,117317713,190,*,190,13,0.478947368,1.193236715,0.068421053,3.62E-08,CpGisland,TRUE,U13,Hc-P
22476,cg23001363,-0.0000333,0.00000945,-3.525386004,0.000486659,loss,ns,0.0000259,0.0000161,1.615174182,0.107290254,pos,ns,-0.01177829,0.004705646,-2.503012277,0.012828391,neg,ns,1.891827827,0.000236704,0.000161827,1.462697606,0.14456322,pos,ns,0.809942221,Gm13975,Gm13975_Intergenic_downstream,2,114784824,114784873,114784872,114784873,50,+,AATGTCTTCCCATATTGCATTCATCTGCATAACAGTAAACACATGCCCCG,Distal Intergenic,2,114708112,114708893,782,1,Gm13975-201,76712,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,9,100043219,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16429,cg17091071,-0.00000696,0.00000256,-2.720908864,0.006877993,loss,ns,-0.00000702,0.00000435,-1.61509074,0.107308328,neg,ns,-0.003550142,0.001273499,-2.787706877,0.005635987,neg,ns,2.249030021,0.000041,0.0000438,0.936757076,0.349612725,pos,ns,0.930894472,Cntln,Cntln_Intron,4,84987523,84987572,84987571,84987572,50,-,GGCACTCTCATTCAAATTCAACTCAAGGGCTCAGCGGCAGGCGGGTCACG,"Intron (Cntln-201/Cntln, intron 8 of 25)",4,84884309,85131921,247613,1,Cntln-201,103214,Cntln-201;Cntln-204,Cntln;Cntln,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,25,338349,ENSMUSG00000038070,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14404,cg17037231,-0.00000665,0.00000946,-0.702965029,0.48260511,loss,ns,0.000026,0.0000161,1.614972778,0.107333884,pos,ns,0.004163573,0.004709002,0.884173287,0.377287893,pos,ns,0.423327131,-0.0000967,0.000161942,-0.597016208,0.550932337,neg,ns,0.429266769,Asic4,Asic4_Intron,1,75458058,75458107,75458058,75458059,50,-,CGTGGACAGGATAATAGCTTACAAATGTGTGGAAGGTGTAAATACCAAAC,"Intron (Asic4-202/Asic4, intron 1 of 8)",1,75450436,75474340,23905,1,Asic4-202,7622,Asic4-202;Asic4-201,Asic4;Asic4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,11,241118,ENSMUSG00000033007,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15851,cg06581691,0.0000146,0.0000122,1.19313456,0.233729029,gain,ns,0.0000335,0.0000208,1.614927166,0.107343767,pos,ns,0.006367038,0.006083442,1.046617777,0.29609126,pos,ns,0.528574412,-0.000115947,0.000209209,-0.554216717,0.579830114,neg,ns,0.910214864,Mef2c,Mef2c_threeUTR,13,83662567,83662616,83662567,83662568,50,+,CGCCGGACGAAAGGGAAAGTCCCTCAGTCAAGCGCATGCGACTTTCTGAA,3' UTR,13,83504034,83663343,159310,1,Mef2c-218,158533,Mef2c-218;Mef2c-228;Mef2c-201;Mef2c-202;Mef2c-222;Mef2c-223;Mef2c-227;Mef2c-213;Mef2c-214;Mef2c-212;Mef2c-203;Mef2c-219;Mef2c-225;Mef2c-230;Mef2c-211,Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,10,41,17260,ENSMUSG00000005583,mapped to different genes,13,83662502,83662606,105,*,105,10,0.590476191,1.097178683,0.095238095,0.000000101,CpGisland,TRUE,NA,NRS
244,cg00360524,0.0000298,0.00000454,6.563443615,2.21E-10,gain,yes,-0.0000124,0.00000771,-1.614813546,0.107368388,neg,ns,-0.000851752,0.00225788,-0.377235314,0.706256855,neg,ns,0.151037324,-0.0000117,0.0000776,-0.150905942,0.880148061,neg,ns,0.827677032,Gm21992,Gm21992_Exon,19,4803718,4803767,4803718,4803719,50,+,CGACCAAAGAAGGGTGGTGTGGGCTGACGGGCTTGCCCATCAAAGCCACC,"Exon (Rbm14-201/Rbm14, exon 2 of 3)",19,4742913,4811612,68700,2,Gm21992-203,7845,Gm21992-203;Gm21992-206;Gm21992-204;Gm21992-201;Gm21992-205;Gm21992-202;Rbm14-201;Rbm14-202;Rbm14-203,Gm21992;Gm21992;Gm21992;Gm21992;Gm21992;Gm21992;Rbm14;Rbm14;Rbm14,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,27,48,102902673,ENSMUSG00000096370,mapped to different genes,19,4803640,4803746,107,*,107,10,0.672897196,0.949423248,0.093457944,0.000000121,CpGisland,TRUE,U10,Tr-S
6007,cg24119607,0.000042,0.0000164,2.552240585,0.011182595,gain,ns,-0.0000451,0.0000279,-1.614770426,0.107377734,neg,ns,0.038306498,0.008186984,4.678951157,0.00000431,pos,ns,5.365166683,-0.00000472,0.00028155,-0.016768159,0.986632358,neg,ns,0.206932784,Cxxc5,Cxxc5_Intron,18,35848035,35848084,35848035,35848036,50,-,CGCCTCCCAGACCTCTGGGGCCATGAATCATTTATGAGGCAAAAATGAAA,"Intron (Gm50371-201/Gm50371-201, intron 4 of 4)",18,35829397,35859002,29606,1,Cxxc5-202,18638,Cxxc5-202;Cxxc5-201;Cxxc5-206;Cxxc5-203,Cxxc5;Cxxc5;Cxxc5;Cxxc5,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,49,67393,ENSMUSG00000046668,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
9082,cg11261437,0.0000227,0.0000039,5.827119227,1.41E-08,gain,yes,0.0000107,0.00000662,1.614637793,0.107406483,pos,ns,0.001775182,0.001939193,0.915422948,0.360681156,pos,ns,0.442876547,-0.0000136,0.0000667,-0.204163875,0.838359408,neg,ns,0.080378865,Nova1,Nova1_Promoter,12,46818048,46818097,46818048,46818049,50,-,CGATGCATTGGGTGCATTGTTAAGATGATTCCAGTGCAAATGAAGAAGCG,Promoter (<=1kb),12,46694517,46818929,124413,2,Nova1-201,832,Nova1-201;Nova1-203;Nova1-202;Nova1-205,Nova1;Nova1;Nova1;Nova1,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,1,24,664883,ENSMUSG00000021047,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18112,cg20072738,-0.0000528,0.00000942,-5.609056612,4.51E-08,loss,yes,0.0000258,0.000016,1.614591754,0.107416464,pos,ns,-0.011932029,0.004686852,-2.545851554,0.011384974,neg,ns,1.943667971,0.000350979,0.00016118,2.177553949,0.030193033,pos,ns,0.860460952,Magi1,Magi1_fiveUTR,6,93913592,93913641,93913592,93913593,50,+,CGACATTTCTAACACATGACAACAATTTCCATCTGTATTTAAGCCGGGAG,5' UTR,6,93675455,94283322,607868,2,Magi1-201,369681,Magi1-201;Magi1-202;Magi1-208;Magi1-203;Magi1-206;Magi1-209;Magi1-205;Magi1-211;Magi1-207,Magi1;Magi1;Magi1;Magi1;Magi1;Magi1;Magi1;Magi1;Magi1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,8,18,14924,ENSMUSG00000045095,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9267,cg27069230,0.00000106,0.00000127,0.833780718,0.405046548,gain,ns,-0.00000349,0.00000216,-1.614505067,0.107435259,neg,ns,-0.00029219,0.000632456,-0.461992011,0.6444111,neg,ns,0.190836987,-0.00000267,0.0000218,-0.122847814,0.902307215,neg,ns,0.984220148,Foxp4,Foxp4_Intron,17,47872504,47872553,47872552,47872553,50,+,ACAAAGGGCCTAATCACGCCGGGGCTCCTGCCTCGGAATAAATTTGCCCG,"Intron (Foxp4-204/Foxp4, intron 13 of 16)",17,47867133,47924645,57513,2,Foxp4-204,52092,Foxp4-204;Foxp4-203;Foxp4-201;Foxp4-202,Foxp4;Foxp4;Foxp4;Foxp4,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,25,74123,ENSMUSG00000023991,conserved gene and region,17,47872440,47872721,282,*,282,26,0.563829787,1.163809524,0.092198582,3.73E-19,CpGisland,TRUE,U10,Tr-S
2247,cg27435767,-0.000106001,0.0000138,-7.677061608,2.14E-13,loss,yes,0.0000379,0.0000235,1.614351252,0.107468614,pos,ns,0.009936395,0.006872109,1.445901707,0.14921499,pos,ns,0.826187546,-0.000538061,0.000236331,-2.276723351,0.023484086,neg,ns,0.726382275,Gm12024,Gm12024_Intron,11,18754542,18754591,18754542,18754543,50,+,CGTTTTTAAATGAAGATATTTAAAATGTACCCCATATTTCAGCATGTTGC,"Intron (Gm28401-202/Gm28401-202, intron 2 of 2)",11,18577227,18578479,1253,2,Gm12024-201,-176063,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,12,100417654,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10459,cg04976001,-0.00000214,0.00000136,-1.572148758,0.1169361,loss,ns,0.00000373,0.00000231,1.614306113,0.107478405,pos,ns,0.001617209,0.000677468,2.387136849,0.017579307,pos,ns,1.754998258,-0.0000208,0.0000233,-0.894873394,0.371549045,neg,ns,0.966612839,Fam184a,Fam184a_Exon,10,53646995,53647044,53647043,53647044,50,-,GCGGCATTTATTTCCTTGAGTAGCTCGTTAGTCTTATTAAAATCTGCCCG,"Exon (Fam184a-201/Fam184a, exon 14 of 18)",10,53633145,53751123,117979,2,Fam184a-201,104079,Fam184a-201;Fam184a-212;Fam184a-209;Fam184a-210;Fam184a-208;Fam184a-204;Fam184a-202;Fam184a-206;Fam184a-211;Fam184a-205,Fam184a;Fam184a;Fam184a;Fam184a;Fam184a;Fam184a;Fam184a;Fam184a;Fam184a;Fam184a,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,75906,ENSMUSG00000019856,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22541,cg19723657,0.0000568,0.00000977,5.814351055,1.51E-08,gain,yes,-0.0000268,0.0000166,-1.61425749,0.107488951,neg,ns,0.004253526,0.004860373,0.875144056,0.382173065,pos,ns,0.417739924,-0.0000313,0.000167148,-0.187323402,0.851529618,neg,ns,0.767833949,Gpc5,Gpc5_Exon,14,115043715,115043764,115043763,115043764,50,-,GCATCTACTGCAGTGAAGGCACTTGTAGCATTATGGTGACAGCTGCCTCG,"Exon (Mir17hg-201/Mir17hg-201, exon 2 of 2)",14,115092215,115134210,41996,1,Gpc5-204,-48500,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,103978,ENSMUSG00000022112,mapped to different genes,14,115043763,115043854,92,*,92,11,0.75,0.892416226,0.119565217,1.44E-09,CpGisland,TRUE,NA,NRS
25375,cg04419897,0.0000133,0.0000121,1.096397948,0.273755647,gain,ns,0.0000333,0.0000206,1.614177684,0.107506264,pos,ns,0.012755456,0.006045609,2.109871156,0.035670612,pos,ns,1.447689437,-0.000204815,0.000207908,-0.985121868,0.325332452,neg,ns,0.681176285,Pak7,Pak7_Intron,2,136108307,136108356,136108307,136108308,50,+,CGATTACAGCTGGTTGTCAGCCAGAATTCCCCTGATCCATGTTAGTTAAA,"Intron (Pak7-201/Pak7, intron 5 of 10)",2,136081104,136387938,306835,2,Pak7-201,279582,Pak7-201;Pak7-202,Pak7;Pak7,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,241656,ENSMUSG00000039913,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7343,cg04469448,-0.00000131,0.000000856,-1.528980595,0.12728897,loss,ns,-0.00000235,0.00000145,-1.614114481,0.107519976,neg,ns,-0.00019677,0.000426123,-0.461767095,0.644572221,neg,ns,0.190728415,-0.00000299,0.0000147,-0.203832541,0.838618105,neg,ns,0.97502639,Gm8176,Gm8176_Intron,1,42351982,42352031,42351982,42351983,50,+,CGCTCATTAGCTAAGAGGGTATCGGCACCGGTCCAATGAACACAGATCTG,"Intron (Gm28140-201/Gm28140-201, intron 1 of 2)",1,42179290,42180388,1099,2,Gm8176-201,-171594,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,17,666582,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
151,cg13157685,-0.00000713,0.00000219,-3.257219867,0.00124982,loss,ns,0.000006,0.00000372,1.614088614,0.107525588,pos,ns,0.000619308,0.001089914,0.568216857,0.570299073,pos,ns,0.243897335,-0.0000639,0.0000375,-1.703822349,0.089416385,neg,ns,0.950156339,Gria4,Gria4_Intron,9,4424226,4424275,4424226,4424227,50,-,CGGTTCCATATACGTTGTAACCTTCTCTATAGGTTGCTAAATTCTGGGTA,"Intron (Gria4-202/Gria4, intron 16 of 16)",9,4417896,4796142,378247,2,Gria4-202,371867,Gria4-202;Gria4-204;Gria4-201,Gria4;Gria4;Gria4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,18,14802,ENSMUSG00000025892,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10952,cg18953741,-0.00000197,0.00000154,-1.28307995,0.200422476,loss,ns,0.00000421,0.00000261,1.614065229,0.107530662,pos,ns,0.002064521,0.00076418,2.70161833,0.007280042,pos,ns,2.137866091,-0.0000645,0.0000263,-2.453144214,0.014711779,neg,ns,0.962164106,Tcf7l2,Tcf7l2_Intron,19,55912079,55912128,55912127,55912128,50,+,CAAATTAAGCTCTGTTAATTTAATGTTTTCTCACCGAGATCTAAATACCG,"Intron (Tcf7l2-213/Tcf7l2, intron 6 of 13)",19,55741820,55933229,191410,1,Tcf7l2-213,170259,Tcf7l2-213;Tcf7l2-201;Tcf7l2-208;Tcf7l2-211;Tcf7l2-212;Tcf7l2-206;Tcf7l2-204;Tcf7l2-205;Tcf7l2-222;Tcf7l2-215;Tcf7l2-214;Tcf7l2-207;Tcf7l2-202;Tcf7l2-209;Tcf7l2-210;Tcf7l2-217;Tcf7l2-220;Tcf7l2-218;Tcf7l2-203;Tcf7l2-216;Tcf7l2-219;Tcf7l2-221,Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,55,88,21416,ENSMUSG00000024985,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22119,cg21234179,0.0000438,0.0000141,3.1084089,0.002055401,gain,ns,-0.0000386,0.0000239,-1.614007083,0.107543279,neg,ns,0.017760405,0.007010146,2.533528501,0.011784566,pos,ns,1.928686394,-0.000484611,0.000241078,-2.010180853,0.045278,neg,ns,0.402140144,Eif4g2,Eif4g2_Exon,7,111080243,111080292,111080243,111080244,50,-,CGGAGTTGTCATCTCGTCTAGTGCTTCGTGCAGGAATCCATTTCTGAGCG,"Exon (Eif4g2-213/Eif4g2, exon 4 of 22)",7,111067750,111083030,15281,2,Eif4g2-213,2738,Eif4g2-213;Eif4g2-206;Eif4g2-204;Eif4g2-211;Eif4g2-210;Eif4g2-209;Eif4g2-203;Eif4g2-201;Eif4g2-212;Eif4g2-205,Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2,0;0;-4858;-4034;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,20,22,13690,ENSMUSG00000005610,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U4,Pr-F
7165,cg21583601,-0.000000527,0.00000228,-0.231277218,0.817252019,loss,ns,-0.00000624,0.00000387,-1.61400492,0.107543749,neg,ns,-0.001106499,0.001133359,-0.976300093,0.329677009,neg,ns,0.481911339,0.0000132,0.000039,0.338639724,0.735110404,pos,ns,0.920572072,Lcor,Lcor_Exon,19,41558264,41558313,41558312,41558313,50,-,CTACCTGTGCAAGTCCTGCTCACATCAGTTTCCTTCCATCCAATTAGGCG,"Exon (Lcor-201/Lcor, exon 8 of 8)",19,41482637,41562261,79625,1,Lcor-201,75627,Lcor-201;Lcor-204;Lcor-206;Lcor-202;Lcor-205,Lcor;Lcor;Lcor;Lcor;Lcor,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,25,212391,ENSMUSG00000025019,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20355,cg13205819,0.000134644,0.00000752,17.91073912,9.55E-50,gain,yes,-0.0000206,0.0000128,-1.613749453,0.107599197,neg,ns,0.008606552,0.003741544,2.300267403,0.02209692,pos,ns,1.655668256,-0.000246349,0.000128671,-1.914555991,0.056469448,neg,ns,0.221805652,Hoxc5,Hoxc5_Intron,15,103010033,103010082,103010081,103010082,50,+,TTAAATAAACTGAACTGGCTTTATGACCGGCTTCCCTAGAAGAACGGGCG,"Intron (Hoxc5-202/Hoxc5, intron 1 of 1)",15,102967443,103015676,48234,1,Hoxc5-202,42590,Hoxc5-202;Hoxc5-201;Hoxc6-202;Hoxc6-203;Hoxc6-201,Hoxc5;Hoxc5;Hoxc6;Hoxc6;Hoxc6,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,46,134,15424,ENSMUSG00000022485,mapped to different genes,15,103009987,103010218,232,*,232,17,0.556034483,0.969041769,0.073275862,5.22E-11,CpGisland,TRUE,U13,Hc-P
18756,cg13687200,-0.000019,0.00000541,-3.506630669,0.000520856,loss,ns,0.0000148,0.0000092,1.613585235,0.107634852,pos,ns,-0.00537558,0.002694271,-1.995189347,0.046897268,neg,ns,1.328852456,0.0000724,0.0000927,0.781660733,0.435010559,pos,ns,0.92320129,Uba3,Uba3_threeUTR,6,97203488,97203537,97203488,97203489,50,+,CGAAATCAGGGTGTGTGAAGGGTCCAGATCGCTCGAGGAACTTCTTTACA,3' UTR,6,97183670,97205560,21891,2,Uba3-202,2023,Uba3-202;Uba3-204;Uba3-201;Uba3-205;Uba3-203,Uba3;Uba3;Uba3;Uba3;Uba3,0;0;0;0;2031,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,4,22200,ENSMUSG00000030061,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
25704,cg13259321,0.0000127,0.00000346,3.654194587,0.000302871,gain,ns,-0.00000949,0.00000588,-1.613150597,0.107729266,neg,ns,-0.004324458,0.001724058,-2.508301673,0.012641775,neg,ns,1.898191935,0.000153291,0.0000593,2.585433974,0.01018196,pos,ns,0.917386758,Nek7,Nek7_Intron,1,138496979,138497028,138497027,138497028,50,-,ATATCCAACTTCACACTTAGCTGCAGTGAAGTAGCCCTGCAGGCAGGCCG,"Intron (Nek7-202/Nek7, intron 9 of 9)",1,138482875,138619749,136875,2,Nek7-202,122721,Nek7-202;Nek7-203;Nek7-201,Nek7;Nek7;Nek7,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,9,59125,ENSMUSG00000026393,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8679,cg21364331,-0.00000103,0.00000573,-0.179783927,0.857439662,loss,ns,-0.0000157,0.00000973,-1.613026556,0.107756223,neg,ns,0.009545075,0.00285181,3.347023654,0.000917425,pos,ns,3.037429581,-0.000336278,0.0000981,-3.428838999,0.000688168,neg,ns,0.833427171,Poll,Poll_Intergenic_downstream,19,45540169,45540218,45540169,45540170,50,-,CGTCATGTCGAGTCTGTCCCATTATATGGACAGTTGAGTTTAATAGTCAT,Distal Intergenic,19,45552275,45560531,8257,2,Poll-201,20362,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,16,56626,ENSMUSG00000025218,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25813,cg16965558,0.00000151,0.00000225,0.671515358,0.502392365,gain,ns,-0.00000616,0.00000382,-1.612814935,0.107802225,neg,ns,-0.002296397,0.001119423,-2.051410673,0.041066982,neg,ns,1.386507211,0.000000884,0.0000385,0.022958922,0.981697811,pos,ns,0.056115814,Uncx,Uncx_Intergenic_downstream,5,139550614,139550663,139550662,139550663,50,-,GATAAATCTGCTATCTAGACGGCTCGCCATGCCTAGAATATTAAGAGCCG,Downstream (2-3kb),5,139543898,139545268,1371,1,Uncx-202,6765,Uncx-201,Uncx,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,59,88,22255,ENSMUSG00000029546,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
4801,cg27017668,-0.0000305,0.0000103,-2.958180231,0.00333274,loss,ns,0.0000282,0.0000175,1.61274562,0.107817297,pos,ns,-0.006815845,0.005127743,-1.32920945,0.184756277,neg,ns,0.733400797,0.000164048,0.000176343,0.930281543,0.352949189,pos,ns,0.719379824,Cstad,Cstad_Intron,2,30606857,30606906,30606905,30606906,50,-,TTGCATGTCTGCATTTTTTACTGCTCCGTTTAATATGTATGCAAATGCCG,"Intron (Cstad-201/Cstad, intron 1 of 1)",2,30595040,30608943,13904,1,Cstad-201,11817,Cstad-201;Cstad-202,Cstad;Cstad,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,7,78617,ENSMUSG00000047363,mapped to different genes,2,30606837,30607020,184,*,184,19,0.60326087,1.135064935,0.10326087,4.44E-15,CpGisland,TRUE,NA,NRS
16344,cg22751689,0.000107429,0.0000194,5.530735567,6.78E-08,gain,yes,-0.0000532,0.000033,-1.612742212,0.107818038,neg,ns,0.028618754,0.009667533,2.960295557,0.003310573,pos,ns,2.480096773,-0.00056478,0.000332466,-1.698762832,0.090367181,neg,ns,0.442198896,Trip12,Trip12_Exon,1,84759018,84759067,84759018,84759019,50,+,CGTGCTGTTCCCGTGTCCTCATTGATTTGCTGCATAGAATTAAAATCAAT,"Exon (Trip12-201/Trip12, exon 17 of 41)",1,84721189,84839304,118116,2,Trip12-201,80237,Trip12-201;Trip12-206;Trip12-207;Trip12-213;Trip12-205;Trip12-208;Trip12-202,Trip12;Trip12;Trip12;Trip12;Trip12;Trip12;Trip12,0;0;0;-4614;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,11,14897,ENSMUSG00000026219,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11580,cg13132580,-0.00000493,0.00000657,-0.751074311,0.453177696,loss,ns,0.000018,0.0000112,1.612659825,0.107835953,pos,ns,-0.000101362,0.003267641,-0.031020004,0.975273548,neg,ns,0.010873555,-0.0000594,0.000112374,-0.528172989,0.597757155,neg,ns,0.86394367,Fgf13,Fgf13_Exon,X,59250921,59250970,59250921,59250922,50,+,CGTAACATAATGTATTCCTGTGTGCCAGGGGGGGCGTCATCCAGAACTGT,"Exon (Fgf13-205/Fgf13, exon 2 of 3)",20,59062145,59568071,505927,2,Fgf13-203,317101,Fgf13-203;Fgf13-205;Fgf13-206;Fgf13-208,Fgf13;Fgf13;Fgf13;Fgf13,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,9,14168,ENSMUSG00000031137,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11910,cg08042501,0.0000711,0.0000131,5.447634851,0.000000104,gain,yes,-0.0000358,0.0000222,-1.612547002,0.107860491,neg,ns,0.004476204,0.006500107,0.688635503,0.491567702,pos,ns,0.30841666,-0.000221654,0.000223538,-0.991570767,0.322180278,neg,ns,0.135680945,Tank,Tank_Intergenic_downstream,2,61656457,61656506,61656457,61656458,50,-,CGTCTCATTTGAGAAGAGCAGCATTTGAGGCAGCAGCGTTCGCCTGCTGA,Downstream (2-3kb),2,61643831,61649977,6147,1,Tank-211,12675,Tank-205;Tank-201;Tank-206;Tank-203;Tank-204;Tank-202;Tank-208,Tank;Tank;Tank;Tank;Tank;Tank;Tank,0;0;0;0;0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,16,17,21353,ENSMUSG00000064289,mapped to different genes,2,61656429,61656917,489,*,489,60,0.707566462,0.985887097,0.122699387,1.21E-51,CpGisland,TRUE,U3,Pr-B
23788,cg09266650,0.000218489,0.0000206,10.62876106,1.05E-22,gain,yes,-0.0000563,0.0000349,-1.612532124,0.107863727,neg,ns,-0.000492598,0.010231146,-0.048146904,0.961630169,neg,ns,0.01699192,0.000498163,0.000351848,1.415844868,0.157824842,pos,ns,0.893376083,Mbnl2,Mbnl2_Exon,14,120388983,120389032,120388983,120388984,50,+,CGACACAAGTGACAACACCGTAACCGTTTGTATGGATTACATAAAGGGGC,"Exon (Mbnl2-201/Mbnl2, exon 5 of 9)",14,120275669,120431697,156029,1,Mbnl2-201,113314,Mbnl2-201;Mbnl2-204;Mbnl2-206;Mbnl2-202;Mbnl2-203;Mbnl2-208;Mbnl2-210,Mbnl2;Mbnl2;Mbnl2;Mbnl2;Mbnl2;Mbnl2;Mbnl2,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,16,105559,ENSMUSG00000022139,conserved gene and region,14,120388889,120389033,145,*,145,10,0.544827586,0.930680359,0.068965517,0.00000206,CpGisland,TRUE,U11,Tr-P
7233,cg12483296,-0.00000748,0.0000034,-2.20259872,0.028358786,loss,ns,0.0000093,0.00000577,1.612525468,0.107865175,pos,ns,0.002107306,0.001689902,1.246998934,0.213339205,pos,ns,0.670929328,-0.000107345,0.0000581,-1.84709763,0.065685773,neg,ns,0.926988669,Gm5267,Gm5267_Intergenic_upstream,1,41677109,41677158,41677109,41677110,50,-,CGAAGCTAGTGAGATGTTAAATTCTAATTAGAAGTGTTAATTAAAAAAAA,Distal Intergenic,1,42103289,42104333,1045,1,Gm5267-201,-426180,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,15,383634,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10203,cg06506831,0.00001,0.00000473,2.112292561,0.035460865,gain,ns,0.000013,0.00000804,1.612384386,0.107895867,pos,ns,0.003792329,0.002355908,1.609709853,0.108479008,pos,ns,0.964654295,-0.0000804,0.000081,-0.992345035,0.321803173,neg,ns,0.064250288,Hoxa10,Hoxa10_Intron,6,52233509,52233558,52233557,52233558,50,-,TATTTATTGGCGCTGGCGGCTGCTTATTTTGGATGCCTTACAAACATCCG,"Intron (Hoxa10-202/Hoxa10, intron 1 of 1)",6,52231197,52234939,3743,2,Hoxa10-202,1381,Hoxa10-202;Hoxa10-203;Hoxa10-201;Hoxa10-204;Hoxa9-203;Hoxa9-204;Hoxa9-205,Hoxa10;Hoxa10;Hoxa10;Hoxa10;Hoxa9;Hoxa9;Hoxa9,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,7,15395,ENSMUSG00000000938,mapped to different genes,6,52233395,52233615,221,*,221,16,0.533936652,1.052380952,0.07239819,2.61E-10,CpGisland,TRUE,U13,Hc-P
2004,cg10480741,-0.00000336,0.00000173,-1.943118913,0.052906796,loss,ns,0.00000473,0.00000293,1.612374326,0.107898055,pos,ns,0.00129202,0.000859477,1.50326325,0.133789197,pos,ns,0.873578954,-0.0000552,0.0000296,-1.868186802,0.062679241,neg,ns,0.051923462,Ppp5c,Ppp5c_Exon,7,17027684,17027733,17027684,17027685,50,-,CGGGCGCACCTTTGAAGTAGTCATTGGCCTGAGTCTTGAGCTCCTCTGCC,Promoter (<=1kb),7,17004640,17027916,23277,2,Ppp5c-201,183,Hif3a-202;Ppp5c-201;Ppp5c-205;Ppp5c-204;Ppp5c-211;Ppp5c-203;Ppp5c-209;Ppp5c-207,Hif3a;Ppp5c;Ppp5c;Ppp5c;Ppp5c;Ppp5c;Ppp5c;Ppp5c,34694;0;0;0;0;-2938;-69;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,2,19060,ENSMUSG00000003099,conserved gene but different region,7,17027535,17028038,504,*,504,53,0.720238095,0.84312859,0.10515873,1.01E-41,CpGisland,TRUE,U1,Pr-A
5115,cg03594978,-0.00000132,0.00000147,-0.894859596,0.37155641,loss,ns,-0.00000403,0.0000025,-1.612348086,0.107903764,neg,ns,0.000522842,0.000732261,0.714010903,0.475757682,pos,ns,0.32261419,-0.0000156,0.0000252,-0.619757327,0.535872824,neg,ns,0.972788717,Akap8l,Akap8l_Exon,17,32336607,32336656,32336607,32336608,50,-,CGGTAGGCATCGTATTGGCCCTCATAGGCCATTTCCATCTCAGGGTCAAG,"Exon (Akap8l-206/Akap8l, exon 5 of 13)",17,32321424,32350575,29152,2,Akap8l-206,13919,Akap8l-206;Akap8l-207;Akap8l-201;Akap8l-209;Akap8l-205;Akap8l-212;Akap8l-204;Akap8l-210;Akap8l-208;Akap8l-211;Akap8l-213;Akap8l-202;Akap8l-203,Akap8l;Akap8l;Akap8l;Akap8l;Akap8l;Akap8l;Akap8l;Akap8l;Akap8l;Akap8l;Akap8l;Akap8l;Akap8l,0;0;0;0;-3708;-3126;0;0;-3133;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,7,54194,ENSMUSG00000002625,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22101,cg03700961,-0.00000446,0.00000235,-1.902739541,0.058000905,loss,ns,0.00000643,0.00000399,1.612181889,0.107939931,pos,ns,0.00207039,0.001167881,1.772775425,0.077247888,pos,ns,1.112113386,-0.0000747,0.0000402,-1.86106444,0.063681576,neg,ns,0.94517875,Zdhhc17,Zdhhc17_threeUTR,10,110944461,110944510,110944461,110944462,50,+,CGATAACAGGACGAAAGAGGCCACAGCATCGAAATTCAAAGAAGTCTATA,3' UTR,10,110941780,111010066,68287,2,Zdhhc17-201,65556,Csrp2-201;Csrp2-206;Zdhhc17-201;Zdhhc17-203;Zdhhc17-210;Zdhhc17-205,Csrp2;Csrp2;Zdhhc17;Zdhhc17;Zdhhc17;Zdhhc17,24672;9790;0;0;0;3187,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,4,320150,ENSMUSG00000035798,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26340,cg07878283,0.0000287,0.0000143,2.003280563,0.046017338,gain,ns,0.0000392,0.0000243,1.611875591,0.108006609,pos,ns,0.000360688,0.007132775,0.050567743,0.959702534,pos,ns,0.017863358,0.000260031,0.000245296,1.060070413,0.289937795,pos,ns,0.539139778,Kiz,Kiz_Intron,2,146833346,146833395,146833394,146833395,50,+,CAGATAATTCAGAAACTATCTGTATGAGCTGTTTATCAAATTATTAACCG,"Intron (Gm14114-201/Gm14114-201, intron 1 of 1)",2,146855864,146970097,114234,1,Kiz-201,-22469,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,29,228730,ENSMUSG00000074749,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
16138,cg26609574,0.0000194,0.00000839,2.311988159,0.021433454,gain,ns,0.000023,0.0000142,1.611864972,0.108008921,pos,ns,-0.007891194,0.00417442,-1.890368933,0.059641188,neg,ns,1.224453717,0.000390303,0.000143558,2.718785018,0.006921254,pos,ns,0.511219156,Bnc2,Bnc2_Intron,4,84500937,84500986,84500985,84500986,50,-,GCAGCGCTGCCAGATGTTCAGAGACCACAAAGCCACTCTCTTCTTTGACG,"Intron (Bnc2-201/Bnc2, intron 4 of 7)",4,84275095,84675034,399940,2,Bnc2-201,174048,Bnc2-201;Bnc2-202;Bnc2-214;Bnc2-215;Bnc2-206;Bnc2-211;Bnc2-205;Bnc2-217;Bnc2-207;Bnc2-212;Bnc2-203;Bnc2-209;Bnc2-221;Bnc2-204;Bnc2-220;Bnc2-208,Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,91,242509,ENSMUSG00000028487,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10262,cg05589845,0.0000884,0.00000654,13.51387563,4.90E-33,gain,yes,-0.0000179,0.0000111,-1.611833345,0.108015808,neg,ns,0.010670927,0.003255165,3.27815291,0.001163615,pos,ns,2.934190568,0.000077,0.000111945,0.68781035,0.492086525,pos,ns,0.162902693,Evx1,Evx1_fiveUTR,6,52313611,52313660,52313659,52313660,50,-,GAAGAGGGCAATGGGGCTTCCTCCCAGAGGCGGTGCGGCACAGAGGAGCG,Promoter (<=1kb),6,52313498,52318378,4881,1,Evx1-201,113,Evx1-201;Evx1-202,Evx1;Evx1,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,7,19,14028,ENSMUSG00000005503,mapped to different genes,6,52313641,52313750,110,*,110,14,0.709090909,1.023255814,0.127272727,1.54E-12,CpGisland,TRUE,U13,Hc-P
1865,cg16925177,0.0000179,0.000024,0.747480436,0.455340216,gain,ns,0.0000657,0.0000408,1.611728472,0.108038648,pos,ns,0.033808357,0.011944424,2.83047204,0.004951475,pos,ns,2.305265378,-0.000891333,0.000410768,-2.169918806,0.030772219,neg,ns,0.837940136,Kcnb2,Kcnb2_Exon,1,15710429,15710478,15710429,15710430,50,-,CGAGAATAAGTACCAGGAGGTTAGCCAAAAAGACTCCCACGAGCAGCTGA,"Exon (Kcnb2-202/Kcnb2, exon 3 of 3)",1,15287254,15712548,425295,1,Kcnb2-202,423175,Kcnb2-202;Kcnb2-201,Kcnb2;Kcnb2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,98741,ENSMUSG00000092083,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21930,cg00730730,-0.00000375,0.00000199,-1.885685731,0.060272166,loss,ns,0.00000544,0.00000338,1.611602505,0.108066085,pos,ns,0.000202062,0.000988998,0.204309776,0.838245498,pos,ns,0.07662877,-0.00000576,0.000034,-0.169418315,0.865578117,neg,ns,0.955693047,Pde4d,Pde4d_Exon,13,109740413,109740462,109740413,109740414,50,-,CGGGACGGAGTCCCTTGGATCCCATGACCAGCCCAGGATCCGGGCTAATT,"Exon (Pde4d-209/Pde4d, exon 4 of 17)",13,108654177,109951474,1297298,1,Pde4d-209,1086236,Pde4d-209;Pde4d-220;Pde4d-214;Pde4d-208;Pde4d-218;Pde4d-205;Pde4d-202;Pde4d-213;Pde4d-201;Pde4d-212,Pde4d;Pde4d;Pde4d;Pde4d;Pde4d;Pde4d;Pde4d;Pde4d;Pde4d;Pde4d,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,7,238871,ENSMUSG00000021699,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24818,cg18174316,-0.0000168,0.00000487,-3.443859907,0.000652386,loss,ns,0.0000133,0.00000827,1.611601165,0.108066377,pos,ns,-0.000821041,0.002422224,-0.33896165,0.734868109,neg,ns,0.133790599,-0.000137333,0.0000833,-1.64865666,0.10023101,neg,ns,0.897592977,Cdk2,Cdk2_Exon,10,128699614,128699663,128699614,128699615,50,+,CGAAAGATCCGGAAGAGCTGGTCAATCTCAGAATCTCCAGGGAATAGGGC,"Exon (Cdk2-201/Cdk2, exon 6 of 7)",10,128697939,128705003,7065,2,Cdk2-201,5340,Cdk2-201;Cdk2-202;Cdk2-204;Cdk2-206;Cdk2-205;Cdk2-207;Cdk2-203;Pmel-202;Rab5b-201;Rab5b-202,Cdk2;Cdk2;Cdk2;Cdk2;Cdk2;Cdk2;Cdk2;Pmel;Rab5b;Rab5b,0;0;0;0;5336;4918;5340;-4532;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,12566,ENSMUSG00000025358,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2816,cg05950747,-0.0000375,0.0000125,-3.005056143,0.002872046,loss,ns,-0.0000342,0.0000212,-1.611463162,0.108096443,neg,ns,0.018671942,0.00621457,3.004543072,0.002876756,pos,ns,2.541097018,-0.00141643,0.000213719,-6.627550159,1.51E-10,neg,yes,0.807333994,Ccdc178,Ccdc178_Intron,18,21884476,21884525,21884476,21884477,50,+,CGCTGTGTTGTAATAATTTGGATACACTTGACTAATGTAGTTATTTGCAA,"Intron (Ccdc178-204/Ccdc178, intron 22 of 23)",18,21810893,22171442,360550,2,Ccdc178-204,286917,Ccdc178-204;Ccdc178-201;Ccdc178-202,Ccdc178;Ccdc178;Ccdc178,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,19,21,70950,ENSMUSG00000024306,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24741,cg24587927,-0.00000544,0.00000487,-1.116990028,0.264863558,loss,ns,0.0000133,0.00000827,1.611180803,0.10815798,pos,ns,0.004539465,0.00242354,1.87307165,0.061999399,pos,ns,1.207612521,-0.0000486,0.0000833,-0.583167128,0.560204792,neg,ns,0.545350409,Baz2a,Baz2a_Exon,10,128125538,128125587,128125586,128125587,50,+,CTTCTGCTTTGTGATGGGTGTGACCGTGGCTGCCACATTTACTGCCATCG,"Exon (Baz2a-209/Baz2a, exon 26 of 29)",10,128091582,128129303,37722,1,Baz2a-209,33956,Baz2a-209;Baz2a-203;Baz2a-208;Baz2a-201;Baz2a-202,Baz2a;Baz2a;Baz2a;Baz2a;Baz2a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,7,116848,ENSMUSG00000040054,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22431,cg24185526,0.0000602,0.00000584,10.306231,1.30E-21,gain,yes,-0.000016,0.00000993,-1.611161592,0.108162168,neg,ns,0.00166501,0.002908,0.572562001,0.567356309,pos,ns,0.246144112,-0.0000389,0.000100006,-0.388798408,0.697692184,neg,ns,0.887985468,Wwox,Wwox_Intron,8,114514728,114514777,114514776,114514777,50,-,TAGCCTCTTATTACCATGTTTGTATTGTTTGCAAATACTATTTACAGTCG,"Intron (Wwox-201/Wwox, intron 5 of 8)",8,114439655,115352708,913054,1,Wwox-201,75073,Wwox-201;Wwox-207;Wwox-203;Wwox-208,Wwox;Wwox;Wwox;Wwox,0;0;0;66518,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,32,32,80707,ENSMUSG00000004637,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20883,cg11128216,0.0000721,0.0000081,8.901849642,4.71E-17,gain,yes,-0.0000222,0.0000138,-1.611137529,0.108167414,neg,ns,0.007151227,0.004029214,1.774844305,0.076904848,pos,ns,1.114046279,0.0000743,0.000138564,0.536373038,0.592085443,pos,ns,0.198537556,Pax6,Pax6_Exon,2,105682297,105682346,105682297,105682298,50,-,CGGAGCACTGTCACAAAGTGACAAGGCTGCCACAAGCGCCCCGACTGATC,"Exon (Pax6-221/Pax6, exon 1 of 2)",2,105668900,105697364,28465,1,Pax6-206,13397,Pax6-206;Pax6-207;Pax6-210;Pax6-214;Pax6-208;Pax6-202;Pax6-205;Pax6-225;Pax6-204;Pax6-201;Pax6-203;Pax6-224;Pax6-219;Pax6-221;Pax6-213;Pax6-211;Pax6-222;Pax6-212;Pax6-215;Pax6-223;Pax6-209;Pax6-216,Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,31,78,18508,ENSMUSG00000027168,conserved gene and region,2,105682176,105682419,244,*,244,18,0.524590164,1.074626866,0.073770492,1.12E-11,CpGisland,TRUE,NA,NRS
5072,cg18736750,-0.00000146,0.00000209,-0.696701361,0.48651179,loss,ns,0.00000573,0.00000356,1.61113253,0.108168504,pos,ns,0.001617091,0.001041501,1.552653561,0.121526206,pos,ns,0.91533006,-0.00000482,0.0000358,-0.134633286,0.892989192,neg,ns,0.944939658,Sgms1,Sgms1_Exon,19,32159589,32159638,32159637,32159638,50,+,AATAGAAAAGGCCCACTGCACCCGGTTAAAATGGTCAAAAAATGTGTCCG,"Exon (Sgms1-201/Sgms1, exon 6 of 10)",19,32122727,32388512,265786,2,Sgms1-201,228874,Sgms1-201;Sgms1-212;Sgms1-209;Sgms1-215;Sgms1-214;Sgms1-206;Sgms1-202;Sgms1-213;Sgms1-210;Sgms1-208;Sgms1-205,Sgms1;Sgms1;Sgms1;Sgms1;Sgms1;Sgms1;Sgms1;Sgms1;Sgms1;Sgms1;Sgms1,0;0;0;0;0;0;0;36790;79174;163591;117288,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,8,208449,ENSMUSG00000040451,conserved gene and region,19,32159576,32159686,111,*,111,9,0.504504505,1.274234694,0.081081081,0.00000221,CpGisland,TRUE,U10,Tr-S
11687,cg04004007,-0.00000666,0.0000016,-4.149153197,0.0000431,loss,ns,0.00000439,0.00000273,1.611130759,0.10816889,pos,ns,0.000993746,0.000798549,1.244440164,0.214277641,pos,ns,0.669023144,-0.0000263,0.0000275,-0.957413756,0.339104516,neg,ns,0.975098336,Baz2b,Baz2b_Exon,2,59935206,59935255,59935254,59935255,50,-,TAAACTAACCTTTATTCGTTTCTCGGCCTCCAATAATTTGGCATTTGCCG,"Exon (Baz2b-202/Baz2b, exon 16 of 35)",2,59899363,60125697,226335,2,Baz2b-202,190442,Baz2b-202;Baz2b-201;Baz2b-213,Baz2b;Baz2b;Baz2b,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,9,407823,ENSMUSG00000026987,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4416,cg14769305,0.0000136,0.00000476,2.854569944,0.004599919,gain,ns,-0.000013,0.00000808,-1.611118491,0.108171564,neg,ns,-0.004589256,0.002367476,-1.938459543,0.053474739,neg,ns,1.271851329,0.0000822,0.0000814,1.009940284,0.313311531,pos,ns,0.893487584,Gtf3c4,Gtf3c4_Exon,2,28834983,28835032,28835031,28835032,50,-,TGACTGGGGTCTGCATGCTGTGTCTCCTCTGAAACTCAGCAAAATCCCCG,"Exon (Gtf3c4-204/Gtf3c4, exon 3 of 6)",2,28822299,28840360,18062,2,Gtf3c4-204,5328,Gtf3c4-204;Gtf3c4-201;Gtf3c4-203;Gtf3c4-202,Gtf3c4;Gtf3c4;Gtf3c4;Gtf3c4,0;0;0;5320,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,269252,ENSMUSG00000035666,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8551,cg04397974,0.0000266,0.0000215,1.236428377,0.217235324,gain,ns,-0.000059,0.0000366,-1.611054353,0.108185548,neg,ns,0.013713712,0.01072012,1.279249892,0.201765757,pos,ns,0.695152538,-0.000472899,0.000368664,-1.282737181,0.200542424,neg,ns,0.358590403,Btrc,Btrc_Intron,19,45329947,45329996,45329995,45329996,50,-,GCTGTCACCGAGCTAATTCTGTCTATATAAAAGCAGTAATGAAATTCACG,"Intron (Gm28578-208/Gm28578-208, intron 3 of 6)",19,45363734,45507736,144003,1,Btrc-204,-33787,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,63,98,12234,ENSMUSG00000025217,conserved gene and region,19,45329908,45330151,244,*,244,14,0.471311475,1.056277056,0.057377049,8.59E-08,CpGisland,TRUE,NA,NRS
27076,cg10799141,-0.000000755,0.00000278,-0.271945649,0.785844837,loss,ns,0.0000076,0.00000472,1.610933008,0.108212008,pos,ns,0.00016583,0.001382253,0.119970672,0.904584094,pos,ns,0.043551053,0.0000241,0.0000475,0.507835029,0.611930174,pos,ns,0.957237309,Cnksr2,Cnksr2_threeUTR,X,157833891,157833940,157833939,157833940,50,-,AAGGACGAGGCCATTTTAGTTGCTTGCAAGAGGTTGATGTTGAGTCTGCG,3' UTR,20,157821436,158043294,221859,2,Cnksr2-201,209354,Cnksr2-201;Cnksr2-202,Cnksr2;Cnksr2,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,11,245684,ENSMUSG00000025658,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1561,cg15783852,-0.000000638,0.00000166,-0.383394026,0.701690421,loss,ns,0.00000455,0.00000283,1.61090675,0.108217734,pos,ns,0.002096475,0.000827845,2.532449469,0.011820144,pos,ns,1.927377243,-0.0000889,0.0000285,-3.123130535,0.001958317,neg,ns,0.958300731,Zfp521,Zfp521_Intron,18,13738639,13738688,13738639,13738640,50,+,CGTAGATTTAATATCCAGTGCTATATCCATATGTGCTGCCCTTGCCTGGT,"Intron (Zfp521-201/Zfp521, intron 5 of 7)",18,13687013,13972787,285775,2,Zfp521-201,234099,Zfp521-201;Zfp521-205;Zfp521-204,Zfp521;Zfp521;Zfp521,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,81,225207,ENSMUSG00000024420,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10002,cg23030042,0.0000128,0.0000109,1.17433341,0.241162827,gain,ns,-0.0000299,0.0000186,-1.610689104,0.108265207,neg,ns,-0.00903568,0.005437087,-1.661860476,0.097551594,neg,ns,1.010765631,0.00023325,0.000186981,1.247453918,0.213172651,pos,ns,0.163992969,Satb1,Satb1_Intron,17,51811644,51811693,51811644,51811645,50,-,CGGCACGATCCAGGCCAAGCTTTCACTGTGACCTTTTAAAGAGACAAAGA,"Intron (Satb1-208/Satb1, intron 1 of 10)",17,51736187,51832672,96486,2,Satb1-208,20979,Satb1-208;Satb1-213;Satb1-204;Satb1-214;Satb1-203;Satb1-211;Satb1-207;Satb1-206;Satb1-202;Satb1-201;Satb1-209;Satb1-210,Satb1;Satb1;Satb1;Satb1;Satb1;Satb1;Satb1;Satb1;Satb1;Satb1;Satb1;Satb1,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,28,36,20230,ENSMUSG00000023927,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9736,cg09368180,-0.00000323,0.00000383,-0.843318793,0.399700406,loss,ns,0.0000105,0.00000651,1.610674194,0.10826846,pos,ns,0.005228483,0.001906479,2.742481916,0.006452202,pos,ns,2.190292038,-0.000130588,0.0000656,-1.991776135,0.047272703,neg,ns,0.925619263,Rufy1,Rufy1_Exon,11,50419650,50419699,50419698,50419699,50,-,TTTCAGATAATCTGCCAGTTTCTTTTGCATGAGTGCAAGATAAAGCCACG,"Exon (Rufy1-201/Rufy1, exon 4 of 18)",11,50389286,50431125,41840,2,Rufy1-201,11426,Rufy1-201;Rufy1-202,Rufy1;Rufy1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,216724,ENSMUSG00000020375,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12580,cg20784391,-0.00000389,0.00000164,-2.369176246,0.018440252,loss,ns,0.0000045,0.00000279,1.610607455,0.108283021,pos,ns,0.001432465,0.000818065,1.751039496,0.080928169,pos,ns,1.091900287,-0.0000615,0.0000281,-2.184357029,0.02968492,neg,ns,0.957243552,Myocd,Myocd_Intergenic_upstream,11,65435828,65435877,65435876,65435877,50,-,AGAGTGGCTACTACATAGAAGTCCTAAGTATTAAGGCGTCAGGTGCCACG,Distal Intergenic,11,65176574,65269989,93416,2,Myocd-203,-165888,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,3,214384,ENSMUSG00000020542,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19333,cg20010041,0.000000289,0.00000187,0.154277856,0.877491047,gain,ns,-0.00000513,0.00000318,-1.610560453,0.108293277,neg,ns,-0.002181125,0.000932337,-2.339417601,0.019948504,neg,ns,1.70008966,0.000052,0.0000321,1.621726926,0.105878415,pos,ns,0.942750363,Atp2b1,Atp2b1_Exon,10,99019298,99019347,99019346,99019347,50,-,CCAGAGTGGAAGTTCCATTCAGGGGGCTCTAAGGCGGCAACCCTCCATCG,"Exon (Atp2b1-210/Atp2b1, exon 5 of 6)",10,98915152,99026143,110992,1,Atp2b1-201,104146,Atp2b1-201;Atp2b1-202;Atp2b1-210;Atp2b1-205;Atp2b1-209;Atp2b1-203,Atp2b1;Atp2b1;Atp2b1;Atp2b1;Atp2b1;Atp2b1,0;4405;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,7,67972,ENSMUSG00000019943,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20497,cg20997947,-0.000000993,0.00000185,-0.536595846,0.591931681,loss,ns,-0.00000506,0.00000314,-1.610519572,0.108302197,neg,ns,-0.00155324,0.000921018,-1.686438717,0.092717385,neg,ns,1.032838824,0.0000267,0.0000317,0.842910781,0.399928222,pos,ns,0.041595093,Hexim2,Hexim2_Promoter,11,103132784,103132833,103132784,103132785,50,+,CGGACCACCCCCCACGGGGTGCTCTCACTGCGCAGCGAGTCCCTCCGCTG,Promoter (<=1kb),11,103132429,103138498,6070,1,Hexim2-205,355,Hexim2-205;Hexim2-202;Hexim2-203;Hexim2-201;Hexim2-204,Hexim2;Hexim2;Hexim2;Hexim2;Hexim2,0;-481;-506;-512;-1032,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,2,2,71059,ENSMUSG00000043372,conserved gene and region,11,103132255,103133111,857,*,857,74,0.66277713,0.789104981,0.086347725,2.91E-51,CpGisland,TRUE,U1,Pr-A
4116,cg08781477,0.0000135,0.00000824,1.636088762,0.102835839,gain,ns,0.0000225,0.000014,1.610476678,0.108311558,pos,ns,0.001161275,0.004101161,0.283157518,0.777245084,pos,ns,0.109442016,-0.000187719,0.000141039,-1.3309731,0.184175922,neg,ns,0.662187431,Gm12072,Gm12072_Promoter,11,26824642,26824691,26824642,26824643,50,-,CGATTTAACCATCTGATTTAATTGACAGAATAAATGCACCTGTCAACGGG,Promoter (8-9kb),11,26832804,26845457,12654,1,Gm12072-201,-8162,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,7,666270,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17096,cg06674314,-0.00000368,0.00000216,-1.705682445,0.089068873,loss,ns,0.0000059,0.00000366,1.610394635,0.108329464,pos,ns,0.002476806,0.001073238,2.307787882,0.021669184,pos,ns,1.664157441,-0.000107747,0.0000369,-2.919305926,0.003765058,neg,ns,0.953119933,Snx14,Snx14_threeUTR,9,88381499,88381548,88381547,88381548,50,+,ATTTCTTCAAAAGTCTGTTTTGCTCCTTTTTGCTTATCTTGGAGAGAGCG,3' UTR,9,88376747,88438951,62205,2,Snx14-209,57403,Snx14-209;Snx14-204;Snx14-203;Snx14-205;Snx14-206;Snx14-207;Snx14-201,Snx14;Snx14;Snx14;Snx14;Snx14;Snx14;Snx14,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,2,244962,ENSMUSG00000032422,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1618,cg05934247,0.00000695,0.00000722,0.962272813,0.336662568,gain,ns,-0.0000198,0.0000123,-1.610382123,0.108332195,neg,ns,-0.004316157,0.003595628,-1.200390148,0.230904337,neg,ns,0.63656791,-0.000103145,0.000123653,-0.834149375,0.404839119,neg,ns,0.805142646,Runx1t1,Runx1t1_Exon,4,13865215,13865264,13865215,13865216,50,+,CGTCAAGAAGAAATGATTGATCACAGACTAACAGACAGAGAATGGGCAGA,"Exon (Runx1t1-201/Runx1t1, exon 7 of 11)",4,13743436,13893649,150214,1,Runx1t1-201,121779,Runx1t1-201;Runx1t1-204;Runx1t1-203;Runx1t1-202,Runx1t1;Runx1t1;Runx1t1;Runx1t1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,24,12395,ENSMUSG00000006586,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7589,cg03556243.1,0.0000488,0.0000105,4.634618242,0.00000528,gain,ns,-0.0000288,0.0000179,-1.610250404,0.108360948,neg,ns,0.010187326,0.005239507,1.944329131,0.052760111,pos,ns,1.277694298,-0.000781521,0.000180186,-4.337294171,0.0000195,neg,ns,0.110131064,Zbtb20,Zbtb20_Exon,16,43363120,43363169,43363120,43363121,50,-,CGGTACAGTCCAGCATGAGCTGGAAATGTAGGAACCTCAGCCTCCCGAGC,"Exon (Zbtb20-214/Zbtb20, exon 1 of 4)",16,42875881,43463175,587295,1,Zbtb20-209,487239,Zbtb20-209;Zbtb20-211;Zbtb20-217;Zbtb20-218;Zbtb20-204;Zbtb20-215;Zbtb20-201;Zbtb20-203;Zbtb20-214;Zbtb20-213;Zbtb20-219;Zbtb20-216,Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,17,98,56490,ENSMUSG00000022708,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12523,cg21584134,-0.00000614,0.00000275,-2.230971199,0.026398108,loss,ns,0.00000753,0.00000468,1.610152187,0.108382391,pos,ns,0.005356991,0.001370291,3.909382876,0.000113692,pos,ns,3.944269604,-0.000134235,0.0000471,-2.848531777,0.004685808,neg,ns,0.919027357,Gm13578,Gm13578_Intergenic_downstream,2,64863609,64863658,64863657,64863658,50,+,CACCTGATGGACTTTGTATTCATTCCAGTCAATTGGGCATATAATACTCG,Distal Intergenic,2,64867999,64868588,590,2,Gm13578-201,4930,Gm13578-201,Gm13578,4930,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,10,667291,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1634,cg02205687,-0.0000098,0.0000045,-2.178356909,0.030132673,loss,ns,-0.0000123,0.00000765,-1.610075664,0.108399101,neg,ns,0.00033691,0.002239796,0.150419838,0.880531215,pos,ns,0.055255243,-0.000121517,0.000077,-1.577605358,0.115676164,neg,ns,0.972641681,Zfp521,Zfp521_Intron,18,13943665,13943714,13943713,13943714,50,-,ACCAGGCAAGGAATATTTCTGCAGCTCAGTGGTAAAGTAAAACTCTGTCG,"Intron (Zfp521-201/Zfp521, intron 2 of 7)",18,13687013,13972787,285775,2,Zfp521-201,29073,Zfp521-201;Zfp521-204;Zfp521-203;Zfp521-202,Zfp521;Zfp521;Zfp521;Zfp521,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,81,225207,ENSMUSG00000024420,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1086,cg19296935,-0.00000614,0.00000504,-1.218670532,0.223895848,loss,ns,0.0000138,0.00000856,1.610045608,0.108405665,pos,ns,0.000520554,0.002506484,0.207682827,0.835612995,pos,ns,0.077994815,-0.0000592,0.0000862,-0.686558545,0.492874173,neg,ns,0.892430613,Spata48,Spata48_Intergenic_downstream,11,11528304,11528353,11528304,11528305,50,+,CGTCTTAATTTTTTGTAATCATTTTTTGTAAAGAGGGTATAATGTCAGGC,Distal Intergenic,11,11489266,11515190,25925,1,Spata48-202,39038,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,73862,ENSMUSG00000020191,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26126,cg20189614,-0.00000716,0.00000287,-2.491911548,0.013228019,loss,ns,0.00000786,0.00000488,1.610022707,0.108410666,pos,ns,0.002559825,0.00142983,1.790300612,0.074381348,pos,ns,1.128535955,-0.0000339,0.0000492,-0.688893504,0.491405542,neg,ns,0.937959679,Lmo4,Lmo4_Intron,3,144126503,144126552,144126503,144126504,50,+,CGATTTAGCTAATTGGACGGCTCTTCCATTATCATTAATTGGCAGAGTTA,"Intron (Gm34078-201/Gm34078-201, intron 3 of 4)",3,144189062,144194818,5757,2,Lmo4-206,68266,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,54,16911,ENSMUSG00000028266,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12761,cg24719601,0.0000297,0.00000445,6.677638254,1.12E-10,gain,yes,-0.0000122,0.00000756,-1.610012083,0.108412986,neg,ns,0.003208326,0.002215694,1.448000658,0.148627467,pos,ns,0.827900924,0.0000903,0.0000762,1.184913882,0.236959083,pos,ns,0.118085098,Phox2b,Phox2b_Exon,5,67098780,67098829,67098780,67098781,50,+,CGTGGCCCCAAAAGTGGTCCTTATCGGGTTATACTGGAAGCCACTGGCCT,Promoter (<=1kb),5,67094399,67099301,4903,2,Phox2b-201,472,Phox2b-201;Phox2b-202,Phox2b;Phox2b,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,28,18935,ENSMUSG00000012520,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
5963,cg22252312,-0.0000109,0.0000104,-1.052733922,0.293282825,loss,ns,0.0000284,0.0000176,1.609927435,0.108431474,pos,ns,0.007563541,0.005165295,1.464299794,0.14412538,pos,ns,0.841259534,0.0000223,0.000177634,0.125521394,0.900192152,pos,ns,0.892755953,Matr3,Matr3_fiveUTR,18,35577549,35577598,35577597,35577598,50,+,TTGCTGCAGGAGTGGAGTCAACATATCAATGGAGCAAGTCACAGTCGTCG,5' UTR,18,35562138,35577876,15739,1,Matr3-205,15411,Matr3-205;Matr3-201;Matr3-210;Matr3-207;Matr3-209;Matr3-213;Matr3-214;Matr3-215;Matr3-202;Matr3-217;Matr3-208;Matr3-204;Matr3-212;Matr3-216;Matr3-203;Snhg4-203;Snhg4-207;Snhg4-206,Matr3;Matr3;Matr3;Matr3;Matr3;Matr3;Matr3;Matr3;Matr3;Matr3;Matr3;Matr3;Matr3;Matr3;Matr3;Snhg4;Snhg4;Snhg4,0;0;0;0;0;0;0;0;0;0;0;0;0;-303;-1429;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,5,17184,ENSMUSG00000037236,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25694,cg26044490,0.000000707,0.0000169,0.041888959,0.966614185,gain,ns,0.0000462,0.0000287,1.609743112,0.108471741,pos,ns,0.013564464,0.008399338,1.614944508,0.107340009,pos,ns,0.969238371,-0.000648337,0.000288853,-2.244527349,0.025503611,neg,ns,0.738221391,Lmo3,Lmo3_Intron,6,138425043,138425092,138425091,138425092,50,-,CAACTAATTAAATGATGGGATTATTCCTCTGCCTACGGTGACATCATTCG,"Intron (A830011K09Rik-201/A830011K09Rik-201, intron 1 of 3)",6,138362918,138581968,219051,2,Lmo3-204,156876,Lmo3-204;Lmo3-207;Lmo3-201;Lmo3-206;Lmo3-202;Lmo3-208;Lmo3-203;Lmo3-205,Lmo3;Lmo3;Lmo3;Lmo3;Lmo3;Lmo3;Lmo3;Lmo3,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,38,109593,ENSMUSG00000030226,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17967,cg16295029,-0.0000415,0.0000141,-2.935529458,0.003578762,loss,ns,0.0000387,0.000024,1.609723245,0.108476082,pos,ns,-0.010991633,0.007038979,-1.561537857,0.119417152,neg,ns,0.92293329,0.000137854,0.00024207,0.569480192,0.569442721,pos,ns,0.518133793,Gm12639,Gm12639_Promoter,4,92977915,92977964,92977963,92977964,50,+,TCGGGCTGCAGATGGCACTGTTAATTTCTATTACAGACTGTAAAATCACG,Promoter (7-8kb),4,92970244,92970736,493,2,Gm12639-201,-7179,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,2,102638982,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8776,cg24461589,0.000049,0.0000111,4.404036877,0.0000147,gain,ns,0.0000304,0.0000189,1.609584665,0.108506365,pos,ns,0.008311967,0.005535744,1.50150855,0.134241944,pos,ns,0.872111767,-0.000131074,0.000190374,-0.688508116,0.491647779,neg,ns,0.587623451,Fgf8,Fgf8_Intron,19,45737824,45737873,45737872,45737873,50,+,TCCAAATGCTGGTACCATGTAATTGGACATAATAGCAAAGCAATTTGGCG,"Intron (Fgf8-201/Fgf8, intron 5 of 5)",19,45736798,45742874,6077,2,Fgf8-201,5001,Fgf8-201;Fgf8-206;Fgf8-202;Fgf8-205;Fgf8-203;Fgf8-204,Fgf8;Fgf8;Fgf8;Fgf8;Fgf8;Fgf8,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,18,14179,ENSMUSG00000025219,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
22587,cg19177967,-0.00000176,0.00000109,-1.620892488,0.106057374,loss,ns,0.00000297,0.00000184,1.609582486,0.108506841,pos,ns,0.001473863,0.000540422,2.727246056,0.006750356,pos,ns,2.1706733,-0.0000439,0.0000186,-2.363538868,0.018718022,neg,ns,0.974568383,Rpl19-ps10,Rpl19-ps10_Intergenic_downstream,7,115302479,115302528,115302479,115302480,50,-,CGGCTTGCTTGCATAAATAAATTAAAAGATGCAAAACTAAAGTTTAAACA,Distal Intergenic,7,115172056,115172385,330,1,Rpl19-ps10-201,130472,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,29,668472,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16548,cg05790430,0.00000229,0.00000237,0.966971839,0.334311881,gain,ns,0.00000648,0.00000402,1.609408835,0.108544797,pos,ns,0.003001811,0.001178681,2.546754111,0.011356188,pos,ns,1.944767443,-0.000038,0.0000405,-0.938608824,0.348662339,neg,ns,0.961607466,Camkmt,Camkmt_Intron,17,85394337,85394386,85394337,85394338,50,+,CGCTGTCACAATGCAATTACCGAACAGAATGATAGCAAGATAGAGGCTCC,"Intron (Camkmt-201/Camkmt, intron 5 of 10)",17,85090552,85458588,368037,1,Camkmt-201,303785,Camkmt-201,Camkmt,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,41,44,73582,ENSMUSG00000071037,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25854,cg21148758,0.00000285,0.00000274,1.039401892,0.299427863,gain,ns,-0.00000749,0.00000465,-1.609334599,0.108561027,neg,ns,-0.004267445,0.001363062,-3.130777783,0.001909573,neg,ns,2.719063827,0.0000687,0.0000469,1.465179342,0.143885456,pos,ns,0.915793141,Ints1,Ints1_Exon,5,139770087,139770136,139770087,139770088,50,+,CGGCTCCTTGCGCTCCTGCATGAGCCCCAGGCAGAAGGCCTGGAAGTTGA,"Exon (Ints1-201/Ints1, exon 10 of 47)",5,139751282,139775673,24392,2,Ints1-201,5537,Ints1-201;Ints1-210;Ints1-202;Ints1-203;Ints1-209;Ints1-205;Ints1-204,Ints1;Ints1;Ints1;Ints1;Ints1;Ints1;Ints1,0;0;-2189;0;-1633;0;5538,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,68510,ENSMUSG00000029547,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11604,cg00411965,-0.00000722,0.00000306,-2.356519314,0.019069032,loss,ns,-0.00000837,0.0000052,-1.60916465,0.108598189,neg,ns,-0.001920248,0.001523991,-1.260012448,0.208612573,neg,ns,0.68065952,-0.0000401,0.0000524,-0.764663183,0.445053817,neg,ns,0.931940254,Mcu,Mcu_Exon,10,59455097,59455146,59455145,59455146,50,+,CATAGCACCAAAGTGGTCCTCTTCTCAGCTTTTCTGCTAATCTCAATTCG,"Exon (Mcu-202/Mcu, exon 6 of 8)",10,59446984,59616692,169709,2,Mcu-202,161546,Mcu-202;Mcu-201,Mcu;Mcu,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,215999,ENSMUSG00000009647,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19688,cg07900208,-0.0000128,0.00000889,-1.443944782,0.149764361,loss,ns,0.0000243,0.0000151,1.609145026,0.10860248,pos,ns,-0.005250895,0.004424306,-1.18682904,0.236203765,neg,ns,0.626713185,-0.000119669,0.000152152,-0.786512979,0.43216784,neg,ns,0.83520008,Kif4,Kif4_Exon,X,100638668,100638717,100638716,100638717,50,-,TTATCACAGGAATAGCAGCTTTCGCTCCAAGCTGCATCTTGTAGACCTCG,"Exon (Kif4-201/Kif4, exon 6 of 30)",20,100625737,100727214,101478,1,Kif4-201,12931,Kif4-201;Kif4-203,Kif4;Kif4,0;4708,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,16571,ENSMUSG00000034311,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15672,cg25544551,-6.64E-08,0.00000149,-0.044700077,0.964375152,loss,ns,0.00000406,0.00000252,1.60908833,0.10861488,pos,ns,0.000634004,0.000739328,0.857541397,0.391808222,pos,ns,0.406926454,0.0000321,0.0000254,1.261655957,0.208021102,pos,ns,0.030184532,Nfyb,Nfyb_fiveUTR,10,82763976,82764025,82763976,82763977,50,-,CGATCATTGGCCGAAGCGAGACACAAACCTCCAATGCAGCCCTGGTTGGC,Promoter (<=1kb),10,82748701,82764144,15444,2,Nfyb-204,119,Nfyb-204;Nfyb-206;Nfyb-201;Nfyb-205,Nfyb;Nfyb;Nfyb;Nfyb,0;0;-313;-330,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,3,18045,ENSMUSG00000020248,conserved gene but different region,10,82763363,82764321,959,*,959,132,0.740354536,1.016110001,0.137643379,1.24E-120,CpGisland,TRUE,U1,Pr-A
15655,cg23107856,0.0000346,0.00000344,10.06000221,8.68E-21,gain,yes,-0.00000941,0.00000585,-1.609034956,0.108626555,neg,ns,0.007393121,0.001712774,4.316460138,0.0000214,pos,ns,4.670478573,-0.000291376,0.0000589,-4.946777213,0.00000124,neg,yes,0.060059476,Nfib,Nfib_Intron,4,82507125,82507174,82507173,82507174,50,-,CTTTTTAACCCCGTCCTGTCCTCATTAGGGAAATGCTCAAACACAGTCCG,"Intron (Nfib-212/Nfib, intron 1 of 1)",4,82498321,82705750,207430,2,Nfib-212,198576,Nfib-201;Nfib-203;Nfib-202;Nfib-205;Nfib-206;Nfib-204;Nfib-207;Nfib-209;Nfib-210;Nfib-208;Nfib-212,Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,66,18028,ENSMUSG00000008575,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
8001,cg03409866,-0.00000489,0.0000103,-0.473667728,0.636070273,loss,ns,0.0000282,0.0000175,1.608996135,0.108635046,pos,ns,0.002960364,0.005136472,0.57634188,0.56480233,pos,ns,0.24810352,-0.0000302,0.000176643,-0.170857123,0.864447575,neg,ns,0.233368537,Pax2,Pax2_Intergenic_upstream,19,44676780,44676829,44676780,44676781,50,+,CGTCAGATTATTAATGGCCATGCGTTGACTCAATTAAATCCAGCCTGCTT,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-79216,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
26840,cg23841180,0.00000183,0.00000203,0.904054503,0.366668506,gain,ns,0.00000554,0.00000345,1.608822407,0.108673055,pos,ns,0.002805439,0.001009362,2.779416466,0.005778217,pos,ns,2.238206132,-0.0000871,0.0000347,-2.508629893,0.012630275,neg,ns,0.037616649,Lamc1,Lamc1_Exon,1,153332158,153332207,153332206,153332207,50,-,GGTACTGCACCCCGGCCAGCATGGTCTGGCTTTGCCACCAGGTGGTGTCG,Promoter (<=1kb),1,153218922,153332786,113865,2,Lamc1-201,579,Lamc1-201,Lamc1,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,6,226519,ENSMUSG00000026478,conserved gene and region,1,153332004,153333079,1076,*,1076,114,0.720260223,0.822001528,0.105947955,2.02E-89,CpGisland,TRUE,U1,Pr-A
11723,cg01075824,0.00000583,0.00000441,1.323373602,0.186686345,gain,ns,0.000012,0.00000749,1.608606014,0.108720413,pos,ns,-0.000856387,0.002194182,-0.390299041,0.696583483,neg,ns,0.157026828,0.0000891,0.0000755,1.181189021,0.238433038,pos,ns,0.937676643,Fam204a,Fam204a_Intron,19,60242445,60242494,60242445,60242446,50,-,CGTGTACAGTATTAGGGACTATGAAATTTTTAATTTACACAAAGTGTCCA,"Intron (Gm28351-201/Gm28351-201, intron 1 of 1)",19,60199435,60226701,27267,2,Fam204a-205,-15793,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,14,76539,ENSMUSG00000057858,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17846,cg11150293,0.000009,0.0000071,1.268048241,0.205732244,gain,ns,0.0000194,0.0000121,1.608365534,0.108773062,pos,ns,0.018843248,0.003531611,5.335595747,0.000000184,pos,ns,6.73482417,-0.000565914,0.000121452,-4.659578709,0.00000471,neg,ns,0.872194598,G3bp2,G3bp2_fiveUTR,5,92073217,92073266,92073217,92073218,50,+,CGCCCTACAAGCAGCGGACTGGGCTTCTCCATAACCATTTCTTTGCTGCA,5' UTR,5,92052146,92083557,31412,2,G3bp2-203,10291,G3bp2-203;G3bp2-201;G3bp2-202;G3bp2-204;G3bp2-209;G3bp2-207;G3bp2-205;G3bp2-208,G3bp2;G3bp2;G3bp2;G3bp2;G3bp2;G3bp2;G3bp2;G3bp2,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,5,23881,ENSMUSG00000029405,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25919,cg19257284,0.00000274,0.00000252,1.08878812,0.277093034,gain,ns,-0.00000688,0.00000428,-1.608328441,0.108781184,neg,ns,-0.0000845,0.001252494,-0.067429484,0.946283266,neg,ns,0.02397884,-0.0000432,0.0000431,-1.003960156,0.316180821,neg,ns,0.931562408,Amz1,Amz1_threeUTR,5,140760863,140760912,140760863,140760864,50,+,CGAAGATGTTCATGGACTCCACCAGCCGGTTGGTGCGCCTGTCCTCCATG,3' UTR,5,140749283,140761439,12157,1,Amz1-206,11580,Amz1-206;Gna12-201;Gna12-202,Amz1;Gna12;Gna12,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,4,231842,ENSMUSG00000050022,conserved gene but different region,5,140760830,140761062,233,*,233,13,0.52360515,0.814247312,0.055793991,0.000000389,CpGisland,TRUE,U10,Tr-S
14371,cg25852019,-0.00000733,0.00000921,-0.795873973,0.426714296,loss,ns,0.0000252,0.0000156,1.608319879,0.108783059,pos,ns,0.003861171,0.004583455,0.842414889,0.400205212,pos,ns,0.39771726,0.0000182,0.000157625,0.115682009,0.907979464,pos,ns,0.855747194,Speg,Speg_threeUTR,1,75384871,75384920,75384919,75384920,50,+,GACCTCCGTGACAGGCACCTCAGAGGAGCAAGTGAGCTGGTGGGGCAGCG,3' UTR,1,75375297,75432320,57024,1,Speg-201,9574,Speg-201;Speg-214;Speg-205;Speg-215;Speg-208;Speg-213;Speg-207;Speg-210;Speg-209;Speg-211,Speg;Speg;Speg;Speg;Speg;Speg;Speg;Speg;Speg;Speg,0;0;0;0;0;0;0;0;-592;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,9,11790,ENSMUSG00000026207,conserved gene and region,1,75384919,75385180,262,*,262,21,0.675572519,0.714545455,0.080152672,2.82E-14,CpGisland,TRUE,U13,Hc-P
21982,cg09467862,0.0000192,0.00000353,5.443248491,0.000000107,gain,yes,-0.00000963,0.00000599,-1.608102379,0.108830697,neg,ns,0.001770989,0.001754442,1.009431643,0.313554907,pos,ns,0.503686398,-0.00005,0.0000603,-0.829229557,0.407612565,neg,ns,0.043191894,Dmrta2,Dmrta2_Promoter,4,109974657,109974706,109974657,109974658,50,+,CGGTTTGGGGATAATTACTTTTAATGTCAGAAAGATTTAGTTTAATATCA,Promoter (3-4kb),4,109978053,109983687,5635,1,Dmrta2-201,-3347,Dmrta2-201,Dmrta2,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,7,13,242620,ENSMUSG00000047143,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
2249,cg17583256,0.0000168,0.0000123,1.370402005,0.171552975,gain,ns,0.0000335,0.0000209,1.608080628,0.108835463,pos,ns,0.013848542,0.006108551,2.26707472,0.024074143,pos,ns,1.618449162,-0.000376874,0.000210073,-1.79402034,0.0737843,neg,ns,0.410880788,Cldn5,Cldn5_Promoter,16,18775949,18775998,18775997,18775998,50,-,CTTTCGAGAAATGGCTGGGCCATTGTGCAGAAGAATGCCCGGAAATCCCG,Promoter (<=1kb),16,18776847,18778262,1416,1,Cldn5-201,-898,Cdc45-201;Cdc45-202;Cldn5-201,Cdc45;Cdc45;Cldn5,35974;35628;-849,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,2,12741,ENSMUSG00000041378,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
10875,cg17311369,-0.000012,0.00000629,-1.901793059,0.058125059,loss,ns,0.0000172,0.0000107,1.607930463,0.108868364,pos,ns,0.004895515,0.003130286,1.563919309,0.118856742,pos,ns,0.924976178,-0.00013509,0.00010765,-1.254893122,0.21046278,neg,ns,0.904949408,Neurod6,Neurod6_Intergenic_upstream,6,55704259,55704308,55704259,55704260,50,+,CGCCTCATCTGGCAGCCGCTTTCTGGTCCAGCAGACACTAACATCTAATG,Distal Intergenic,6,55677822,55681263,3442,2,Neurod6-201,-22996,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,16,11922,ENSMUSG00000037984,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8526,cg16812753,-0.00000534,0.00000136,-3.928559124,0.000105395,loss,ns,0.00000372,0.00000231,1.607771173,0.108903273,pos,ns,0.00111734,0.000677017,1.650386954,0.099876565,pos,ns,1.000536404,-0.0000268,0.0000233,-1.150632236,0.250770342,neg,ns,0.058885823,Btrc,Btrc_Intron,19,45302249,45302298,45302249,45302250,50,+,CGGGCAGATTTATTCCGCTGCCAAGCCTGCAGAAAATTGACTTGTTCATG,"Intron (Gm28578-211/Gm28578-211, intron 1 of 1)",19,45363734,45507736,144003,1,Btrc-204,-61436,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,63,98,12234,ENSMUSG00000025217,mapped to different genes,19,45301752,45302408,657,*,657,54,0.611872146,0.882427559,0.082191781,2.09E-36,CpGisland,TRUE,U3,Pr-B
16928,cg25543045,0.0000279,0.0000046,6.066666542,3.80E-09,gain,yes,-0.0000126,0.00000782,-1.607597697,0.108941301,neg,ns,0.002693782,0.002291914,1.175341668,0.240759974,pos,ns,0.618415711,-0.000199235,0.0000788,-2.527767561,0.011975625,neg,ns,0.083276575,Ascl1,Ascl1_Intergenic_downstream,10,87447984,87448033,87448032,87448033,50,-,GCTGCCTACCCTATTTAGGCCCAAAACTTTTCAATGGCCTCCAAAACCCG,Distal Intergenic,10,87490819,87493660,2842,2,Ascl1-201,45676,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,11,11,17172,ENSMUSG00000020052,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15706,cg05150697,0.0000191,0.00000887,2.150806904,0.032264201,gain,ns,0.0000242,0.0000151,1.607558741,0.108949842,pos,ns,0.013775441,0.004413688,3.121072636,0.001971629,pos,ns,2.705174788,-0.000408378,0.000151786,-2.690477111,0.007521784,neg,ns,0.713105124,Tcf20,Tcf20_Intron,15,82917508,82917557,82917556,82917557,50,+,GCTACTTAGCGCCAGATTAATCACACCGAATTCTCCATCCAGATATTGCG,"Intron (Tcf20-204/Tcf20, intron 1 of 1)",15,82856793,82963558,106766,2,Tcf20-204,46001,Tcf20-204;Tcf20-203,Tcf20;Tcf20,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,13,21411,ENSMUSG00000041852,mapped to different genes,15,82917491,82917678,188,*,188,20,0.595744681,1.230769231,0.106382979,3.98E-16,CpGisland,TRUE,NA,NRS
15409,cg21611883,-0.000000215,0.00000212,-0.10155131,0.91917848,loss,ns,-0.00000578,0.0000036,-1.607557507,0.108950112,neg,ns,-0.000573381,0.001053676,-0.544171936,0.586714338,neg,ns,0.231573299,-0.0000182,0.0000362,-0.50272901,0.615511765,neg,ns,0.046749862,Myo1d,Myo1d_Promoter,11,80779026,80779075,80779074,80779075,50,+,GTTTATCTTGGCACTGGCAAGTACAGCAGTCTCTTCGATGTCTGGAAACG,Promoter (<=1kb),11,80482126,80780025,297900,2,Myo1d-201,950,Myo1d-201;Myo1d-202;Myo1d-203,Myo1d;Myo1d;Myo1d,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,1,3,338367,ENSMUSG00000035441,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2472,cg25157454,-0.0000216,0.00000546,-3.962415968,0.0000921,loss,ns,-0.0000149,0.00000928,-1.607501827,0.108962321,neg,ns,-0.006277746,0.002718014,-2.309680966,0.02156266,neg,ns,1.666297657,-0.0000729,0.0000935,-0.779966481,0.436005697,neg,ns,0.90301085,Rorb,Rorb_Intergenic_upstream,19,19720150,19720199,19720150,19720151,50,-,CGGGCCTGAATAGAGAAGTCATCAGGGTAGTAATCAGTGATGTACAGAAC,Distal Intergenic,19,18930605,19111196,180592,2,Rorb-203,-609003,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,10,225998,ENSMUSG00000036192,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
579,cg02153512,-0.000130442,0.0000114,-11.45072634,1.48E-25,loss,yes,-0.0000311,0.0000194,-1.607473822,0.108968462,neg,ns,0.032738376,0.005669705,5.774264837,1.88E-08,pos,ns,7.726463279,-0.001068196,0.000194981,-5.478471184,8.89E-08,neg,yes,0.84906053,Tox,Tox_Intron,4,6962769,6962818,6962817,6962818,50,+,TTTCAGAAGATAATAAATAGCCAGGATCTAATTTTGCCATGTCACAACCG,"Intron (Tox-201/Tox, intron 1 of 8)",4,6686353,6990799,304447,2,Tox-201,27981,Tox-201;Tox-203;Tox-204,Tox;Tox;Tox,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,15,252838,ENSMUSG00000041272,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27747,cg27272373,0.00000255,0.00000345,0.737706739,0.461250707,gain,ns,-0.00000942,0.00000586,-1.607421763,0.108979878,neg,ns,0.007383402,0.001717376,4.299235153,0.000023,pos,ns,4.638584208,-0.000150063,0.0000591,-2.540844556,0.011545852,neg,ns,0.895325247,Wdr26,Wdr26_threeUTR,1,181177698,181177747,181177698,181177699,50,+,CGAGCATGTCTGTCCAGCTATCAATCATGTTTGTTTGCACCAAATCCCAA,3' UTR,1,181173228,181211978,38751,2,Wdr26-207,34231,Wdr26-207;Wdr26-209;Wdr26-208;Wdr26-201;Wdr26-204;Wdr26-202;Wdr26-205,Wdr26;Wdr26;Wdr26;Wdr26;Wdr26;Wdr26;Wdr26,0;0;0;0;0;5992;6649,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,7,226757,ENSMUSG00000038733,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5635,cg04647605,-0.00000961,0.00000581,-1.653079156,0.099327073,loss,ns,0.0000159,0.00000987,1.607188375,0.109031071,pos,ns,0.005078389,0.002892666,1.755608286,0.080142942,pos,ns,1.09613472,-0.000234393,0.0000995,-2.356215879,0.019084335,neg,ns,0.893780164,Mapkap1,Mapkap1_fiveUTR,2,34435153,34435202,34435153,34435154,50,-,CGAAAAGAGAGACAAAACCAGATCAAATGCAAAAATATTCAGTGGAAAGA,5' UTR,2,34406771,34497716,90946,1,Mapkap1-210,28382,Gm13406-201;Mapkap1-210;Mapkap1-204;Mapkap1-208;Mapkap1-211;Mapkap1-202;Mapkap1-201;Mapkap1-209;Mapkap1-203;Mapkap1-207,Gm13406;Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1,1380;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,59,227743,ENSMUSG00000038696,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17308,cg13571205,0.000036,0.000011,3.272548732,0.001186136,gain,ns,0.00003,0.0000187,1.607092836,0.109052032,pos,ns,0.013538978,0.005474062,2.473296354,0.013923037,pos,ns,1.856266015,-0.000554254,0.000188253,-2.944207107,0.003482612,neg,ns,0.55258849,Dmrta1,Dmrta1_Intergenic_upstream,4,89630779,89630828,89630827,89630828,50,-,GCCTTAGGGAAACATTTAGTACTTAGGCTTTGGTTTTTCAAGCTCAATCG,Distal Intergenic,4,89679436,89691919,12484,1,Dmrta1-202,-48657,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,4,242523,ENSMUSG00000043753,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17113,cg13061698,-0.000000905,0.0000017,-0.531857352,0.59520573,loss,ns,0.00000465,0.00000289,1.606612576,0.109157451,pos,ns,0.002254442,0.000847292,2.660762826,0.008202281,pos,ns,2.086065373,-0.0000443,0.0000291,-1.519172509,0.129738281,neg,ns,0.964463084,Gm20537,Gm20537_Exon,9,88456268,88456317,88456316,88456317,50,+,TTGGTCTGGCGCCGCTTGGAATCTGGCTGGTTGTACCCATCAGCTTTGCG,Promoter (<=1kb),9,88407432,88456616,49185,2,Gm20537-202,299,Gm20537-202;Gm20537-201;Syncrip-201;Syncrip-210;Syncrip-211;Syncrip-207;Syncrip-208;Syncrip-203;Syncrip-205;Syncrip-209,Gm20537;Gm20537;Syncrip;Syncrip;Syncrip;Syncrip;Syncrip;Syncrip;Syncrip;Syncrip,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,5,,NA,mapped to different genes,9,88456277,88456476,200,*,200,15,0.625,0.818330606,0.075,6.51E-10,CpGisland,TRUE,U10,Tr-S
9912,cg10248578,-0.00000464,0.00000321,-1.445024333,0.149461105,loss,ns,0.00000877,0.00000546,1.606544151,0.109172477,pos,ns,0.002467742,0.00159929,1.543023742,0.123845182,pos,ns,0.907120885,-0.0000689,0.000055,-1.251908512,0.211546957,neg,ns,0.913362011,Gm46574,Gm46574_Intergenic_upstream,17,51536909,51536958,51536957,51536958,50,-,TAATTCATTTTGCACAAAGCATGTTGATGCCTTTGCCGGAGACATTAGCG,Distal Intergenic,17,51484292,51484721,430,2,Gm46574-201,-52237,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,19,108168316,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9730,cg18173636,0.0000435,0.0000128,3.406340112,0.000745206,gain,ns,-0.0000349,0.0000217,-1.606509769,0.109180028,neg,ns,0.009289453,0.00635677,1.461347866,0.144932867,pos,ns,0.838833118,-0.00031363,0.000218609,-1.434663258,0.152391116,neg,ns,0.188389654,Hnrnph1,Hnrnph1_Exon,11,50379859,50379908,50379907,50379908,50,-,AAGCATACTGGTCCAAATAGTCCTGACACGGCCAATGATGGCTTTGTACG,"Exon (Hnrnph1-203/Hnrnph1, exon 5 of 15)",11,50376990,50386528,9539,1,Hnrnph1-203,2869,Hnrnph1-203;Hnrnph1-201;Hnrnph1-205;Hnrnph1-206;Hnrnph1-215;Hnrnph1-204;Hnrnph1-202;Hnrnph1-207;Hnrnph1-208;Hnrnph1-210;Hnrnph1-211;Hnrnph1-213;Hnrnph1-209;Hnrnph1-218;Hnrnph1-216;Hnrnph1-214;Hnrnph1-212,Hnrnph1;Hnrnph1;Hnrnph1;Hnrnph1;Hnrnph1;Hnrnph1;Hnrnph1;Hnrnph1;Hnrnph1;Hnrnph1;Hnrnph1;Hnrnph1;Hnrnph1;Hnrnph1;Hnrnph1;Hnrnph1;Hnrnph1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;-3904;-3923,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,59013,ENSMUSG00000007850,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U4,Pr-F
10494,cg10082575,-0.000000522,0.00000299,-0.174764463,0.861378797,loss,ns,0.00000816,0.00000508,1.606473933,0.109187899,pos,ns,0.004746897,0.001487406,3.191393715,0.00156103,pos,ns,2.806588718,-0.000140603,0.0000512,-2.748739554,0.006333233,neg,ns,0.937631733,Npas3,Npas3_Intron,12,53891064,53891113,53891064,53891065,50,+,CGAGAAGATGTCATAACTAATTTAGTATGTTGTAAATCTTTTGACACAGA,"Intron (Npas3-204/Npas3, intron 4 of 10)",12,53248157,54069532,821376,1,Npas3-204,642907,Npas3-204;Npas3-201;Npas3-203,Npas3;Npas3;Npas3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,83,103,27386,ENSMUSG00000021010,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9048,cg18906085,-0.0000387,0.00000813,-4.756869712,0.00000302,loss,ns,-0.0000222,0.0000138,-1.606356288,0.10921374,neg,ns,-0.008068771,0.004046182,-1.994169269,0.047009206,neg,ns,1.327817082,-0.000144008,0.000139148,-1.034927544,0.3015094,neg,ns,0.831979222,Nova1,Nova1_Exon,12,46699997,46700046,46699997,46699998,50,+,CGAACTCCTTGCTCATATGTGATCCTTTGTGTAATTAAATATTGAGCAGC,"Exon (Nova1-201/Nova1, exon 5 of 5)",12,46694517,46818929,124413,2,Nova1-201,118883,Nova1-201;Nova1-204,Nova1;Nova1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,24,664883,ENSMUSG00000021047,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6008,cg18281552,0.0000483,0.0000108,4.457703934,0.0000116,gain,ns,-0.0000296,0.0000184,-1.606165288,0.109255705,neg,ns,0.018415396,0.005395336,3.413206439,0.000727347,pos,ns,3.138258328,-0.0000289,0.000185545,-0.155683983,0.876383449,neg,ns,0.114912164,Cxxc5,Cxxc5_Intron,18,35848074,35848123,35848122,35848123,50,+,CAAAAATGAAACCAATTAAGGACAAACTTTGAAAGCCTCTAATTGCTGCG,"Intron (Gm50371-201/Gm50371-201, intron 4 of 4)",18,35829397,35859002,29606,1,Cxxc5-202,18677,Cxxc5-202;Cxxc5-201;Cxxc5-206;Cxxc5-203,Cxxc5;Cxxc5;Cxxc5;Cxxc5,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,49,67393,ENSMUSG00000046668,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
22790,cg02042310,0.0000377,0.00000704,5.362582414,0.000000161,gain,yes,0.0000192,0.000012,1.606134968,0.109262368,pos,ns,0.004714684,0.003502722,1.346005508,0.179284229,pos,ns,0.746457913,-0.00021129,0.000120458,-1.754050499,0.080409973,neg,ns,0.127222341,Dmbx1,Dmbx1_Intergenic_upstream,4,115955267,115955316,115955267,115955268,50,-,CGGGGACCAGGCATCAGATTGGAGTCAAGATTCCGAGAGTGTCATTTGCC,Distal Intergenic,4,115915119,115939926,24808,2,Dmbx1-203,-15390,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,15,42,140477,ENSMUSG00000028707,mapped to different genes,4,115955251,115955377,127,*,127,13,0.661417323,0.971176471,0.102362205,2.30E-10,CpGisland,TRUE,U13,Hc-P
9769,cg24558408,0.0000231,0.00000849,2.721697868,0.006861984,gain,ns,0.0000232,0.0000144,1.606116089,0.109266517,pos,ns,0.014333904,0.004224001,3.39344279,0.000779861,pos,ns,3.107982691,-0.000251769,0.000145263,-1.733191456,0.084056026,neg,ns,0.877774872,Trps1,Trps1_Intron,15,50776590,50776639,50776638,50776639,50,+,TTCCGGACTTTGCATCTAAATTTATACTTGACAAGTTAAACTTTTCATCG,"Intron (Trps1-202/Trps1, intron 4 of 5)",15,50654752,50889691,234940,2,Trps1-202,113052,Trps1-202;Trps1-206;Trps1-204;Trps1-205;Trps1-207;Trps1-201,Trps1;Trps1;Trps1;Trps1;Trps1;Trps1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,36,83925,ENSMUSG00000038679,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9843,cg09370029,0.0000029,0.00000259,1.118238299,0.264331032,gain,ns,0.00000708,0.00000441,1.606097834,0.109270529,pos,ns,-0.001440697,0.001290684,-1.116228014,0.265189005,neg,ns,0.576444485,0.000149875,0.0000444,3.376600517,0.000827382,pos,ns,0.956870516,Gm44402,Gm44402_Intergenic_downstream,6,51077303,51077352,51077351,51077352,50,+,CAGGTTCAAAAACAATCCTCCTCTTTGCCTTCTGTCTATCAATTAGGGCG,Distal Intergenic,6,50967268,50967505,238,1,Gm44402-201,110035,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,9,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10546,cg07885314,0.00000335,0.00000343,0.976649809,0.329504065,gain,ns,0.00000937,0.00000583,1.606066191,0.109277483,pos,ns,0.003473517,0.001709419,2.031987061,0.043007362,pos,ns,1.366457191,-0.000126289,0.0000588,-2.14825104,0.032468373,neg,ns,0.938773887,Gm8594,Gm8594_Intergenic_upstream,18,54216289,54216338,54216337,54216338,50,-,ACTGCAAGCCATAGCAAGCACAAATGTTTAGAATAGCTATTTTGGCATCG,Distal Intergenic,18,54030699,54031308,610,2,Gm8594-201,-185030,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,3,667360,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19458,cg21102110,0.0000011,0.0000046,0.238758788,0.811450387,gain,ns,0.0000126,0.00000782,1.605996297,0.109292845,pos,ns,0.002052614,0.002290811,0.896020658,0.370936972,pos,ns,0.430699877,-0.000125083,0.0000788,-1.58772825,0.113367197,neg,ns,0.917582577,Gm12685,Gm12685_Intergenic_downstream,4,99370501,99370550,99370501,99370502,50,+,CGGCCCATAAACTAGAATAGCTATGAAACACAGGCTGCCTTTATGTTGAA,Distal Intergenic,4,99418498,99418711,214,2,Gm12685-201,48161,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,13,13,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2385,cg07479479,0.00000202,0.000000779,2.591263642,0.010014735,gain,ns,-0.00000213,0.00000132,-1.605921444,0.109309299,neg,ns,-0.000633556,0.000387893,-1.633326717,0.103415492,neg,ns,0.985414398,0.0000118,0.0000133,0.886840514,0.375852251,pos,ns,0.016670273,Tfap2b,Tfap2b_Intron,1,19231845,19231894,19231845,19231846,50,+,CGCGGTTTGTCCCGTTGACAGCGTAATTTAAAGAAATATATGGAAGGCTG,"Intron (Tfap2b-201/Tfap2b, intron 6 of 6)",1,19208914,19238576,29663,1,Tfap2b-201,22931,Tfap2b-201;Tfap2b-204;Tfap2b-202,Tfap2b;Tfap2b;Tfap2b,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,40,21419,ENSMUSG00000025927,conserved gene and region,1,19231763,19231867,105,*,105,11,0.561904762,1.336805556,0.104761905,6.39E-09,CpGisland,TRUE,NA,NRS
8410,cg23309550,0.00000693,0.00000764,0.907582316,0.364803905,gain,ns,0.0000208,0.000013,1.605756008,0.109345672,pos,ns,0.008552854,0.003800461,2.250477764,0.025119372,pos,ns,1.599991227,-0.000285771,0.000130698,-2.186509304,0.029525715,neg,ns,0.285179583,Zeb2,Zeb2_Intron,2,45100893,45100942,45100941,45100942,50,-,GTCAAATCACCAGGAGGCTGTGACAAAGGGAGCTTGCAGCCTGACACACG,"Intron (Zeb2-212/Zeb2, intron 3 of 10)",2,44983632,45117395,133764,2,Zeb2-212,16453,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219;Zeb2-211;Zeb2-210;Zeb2-205;Zeb2-223;Zeb2-217,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;9134,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2210,cg22790931,-0.0000187,0.00000288,-6.471617786,3.78E-10,loss,yes,0.00000786,0.0000049,1.60568272,0.109361788,pos,ns,-0.00484983,0.001434531,-3.380777174,0.000815352,neg,ns,3.088654682,0.000111071,0.0000493,2.251432957,0.025058163,pos,ns,0.935466543,Vps41,Vps41_Intergenic_upstream,13,18613537,18613586,18613585,18613586,50,-,AAAAGTCAAGCTGCTCCACCAAATAGAATGAAACCGTCATGTGACCTCCG,Distal Intergenic,13,18717286,18748999,31714,1,Vps41-204,-103749,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,4,218035,ENSMUSG00000041236,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26389,cg13656236,0.0000927,0.00000854,10.84985298,1.84E-23,gain,yes,-0.0000233,0.0000145,-1.605601393,0.109379674,neg,ns,0.004832416,0.004252331,1.136415814,0.256660303,pos,ns,0.590641297,0.000127614,0.000146237,0.872646762,0.383531051,pos,ns,0.22346223,Nkx2-2,Nkx2-2_Exon,2,147188384,147188433,147188384,147188385,50,-,CGAAATAATACATGATTGACGCTCTCTTTCAATGTGTCCTAACTGTTTGG,"Exon (6430503K07Rik-201/6430503K07Rik-201, exon 3 of 3)",2,147186305,147194243,7939,2,Nkx2-2-202,5810,Nkx2-2-203;Nkx2-2-201;Nkx2-2-202;Nkx2-2-204,Nkx2-2;Nkx2-2;Nkx2-2;Nkx2-2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,15,30,18088,ENSMUSG00000027434,conserved gene but different region,2,147188041,147188404,364,*,364,26,0.585164835,0.836633663,0.071428571,2.81E-16,CpGisland,TRUE,U13,Hc-P
6523,cg08895766,-0.00000646,0.00000287,-2.251547685,0.02505082,loss,ns,0.00000783,0.00000488,1.605369119,0.109430771,pos,ns,0.000377017,0.00142895,0.263841956,0.792077006,pos,ns,0.101232594,-0.0000745,0.0000491,-1.51553437,0.130656104,neg,ns,0.932988849,Tenm2,Tenm2_Intergenic_upstream,11,37609321,37609370,37609369,37609370,50,+,CTAGATAGCTCATTCAATGTTTATCTTGATGACTAGAAAACAAGCAACCG,Distal Intergenic,11,36944205,37235964,291760,2,Tenm2-207,-373357,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,9,84,23964,ENSMUSG00000049336,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4812,cg25905455,0.0000524,0.0000166,3.155942229,0.001756965,gain,ns,-0.0000452,0.0000282,-1.605144395,0.109480225,neg,ns,0.022209674,0.008257116,2.689761534,0.007537555,pos,ns,2.122769518,-0.00040298,0.000283962,-1.419135018,0.156864332,neg,ns,0.084582512,Cstad,Cstad_Intron,2,30677229,30677278,30677229,30677230,50,-,CGGAATTTGAAATCCCAGCGAGTCGGTGCCATTTATTTTCAGAGGCTGTC,"Intron (9330198N18Rik-201/9330198N18Rik-201, intron 2 of 3)",2,30605217,30608217,3001,1,Cstad-202,72061,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,7,78617,ENSMUSG00000047363,mapped to different genes,2,30676954,30677400,447,*,447,41,0.646532439,0.890784485,0.091722595,8.25E-30,CpGisland,TRUE,U6,En-Sp
9607,cg27426637,-0.000008,0.00000637,-1.256091168,0.210028721,loss,ns,0.0000174,0.0000108,1.605074828,0.109495537,pos,ns,0.002416689,0.003171135,0.762089352,0.446586102,pos,ns,0.350094796,-0.0000661,0.000109055,-0.605774429,0.545107814,neg,ns,0.873333493,Ncam1,Ncam1_threeUTR,9,49503939,49503988,49503987,49503988,50,-,CAGATTTCCAAAAAAAGACACTAATTCCCTGAAGCACACATGCTCTTCCG,3' UTR,9,49502136,49798925,296790,2,Ncam1-204,294937,Ncam1-204;Ncam1-205;Ncam1-202,Ncam1;Ncam1;Ncam1,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,16,17967,ENSMUSG00000039542,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15989,cg26274522,0.00000901,0.00000359,2.506697325,0.012698122,gain,ns,-0.0000098,0.00000611,-1.604848016,0.109545474,neg,ns,0.009888417,0.001788772,5.528048267,6.88E-08,pos,ns,7.162512289,-0.000218351,0.0000615,-3.549512879,0.000445758,neg,ns,0.899590755,Zadh2,Zadh2_threeUTR,18,84096855,84096904,84096855,84096856,50,+,CGAAGTGTCACAACTGCACTAAAGACAAATAGCACTAGAGGCTATTGCCA,3' UTR,18,84088063,84097528,9466,1,Zadh2-201,8792,Zadh2-201;Zadh2-202,Zadh2;Zadh2,0;8184,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,2,225791,ENSMUSG00000049090,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20311,cg16492924,0.000106655,0.0000115,9.282386407,2.97E-18,gain,yes,-0.0000313,0.0000195,-1.60456017,0.109608874,neg,ns,0.003734773,0.005718712,0.65307937,0.514189162,pos,ns,0.288877082,-0.000210482,0.000196666,-1.070252021,0.285338466,neg,ns,0.291577214,Hoxc5,Hoxc5_Intron,15,102996235,102996284,102996235,102996236,50,+,CGAAAGCCATTTGTGATTTGTGAAAAATAGTATCTTTCAAAATGCTGAGT,"Intron (Hoxc5-202/Hoxc5, intron 1 of 1)",15,102967443,103015676,48234,1,Hoxc5-202,28792,Hoxc5-202;Hoxc6-202;Hoxc6-203;Hoxc8-201;Hoxc8-202,Hoxc5;Hoxc6;Hoxc6;Hoxc8;Hoxc8,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,46,134,15424,ENSMUSG00000022485,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
482,cg01096459,0.00000469,0.00000337,1.391595947,0.165042514,gain,ns,-0.00000919,0.00000573,-1.604467383,0.109629318,neg,ns,-0.001322343,0.00167783,-0.788126532,0.43122493,neg,ns,0.36529614,0.0000342,0.0000577,0.59348781,0.553287508,pos,ns,0.912681715,Epc1,Epc1_threeUTR,18,6436151,6436200,6436151,6436152,50,+,CGATATTTGTGGTTCTGGCCTTGCAGCCTTCTGGAGAATCTTAAAAGGAA,3' UTR,18,6435951,6516108,80158,2,Epc1-203,79908,Epc1-203;Epc1-201;Epc1-204,Epc1;Epc1;Epc1,0;0;5694,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,8,13831,ENSMUSG00000024240,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5333,cg04300684,0.0000137,0.00000999,1.373610525,0.170555141,gain,ns,0.0000272,0.000017,1.604423012,0.109639095,pos,ns,0.000956337,0.004973389,0.19229085,0.847640288,pos,ns,0.07178841,0.000127632,0.000171034,0.746236196,0.456090263,pos,ns,0.849139534,Nkx1-1,Nkx1-1_Intergenic_upstream,5,33502317,33502366,33502317,33502318,50,-,CGACACTGGTCTAATGGAATCTTAAATGGAACTGACTTGATCTGCGTGGG,Distal Intergenic,5,33430734,33433976,3243,2,Nkx1-1-201,-68390,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,13,672284,ENSMUSG00000029112,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5248,cg08693006,0.00000333,0.00000465,0.716408488,0.474278502,gain,ns,-0.0000127,0.00000791,-1.604178987,0.109692878,neg,ns,-0.002060786,0.002316491,-0.889615222,0.37436236,neg,ns,0.426707824,-0.000064,0.0000797,-0.802907645,0.422643263,neg,ns,0.764850222,Atxn7l1,Atxn7l1_Intron,12,33162710,33162759,33162710,33162711,50,+,CGGTTGCCTTTGAATGGATTACAGATGGTCAGAAAAAGACTTCTTGGCAC,"Intron (Atxn7l1-201/Atxn7l1, intron 1 of 2)",12,33147693,33251146,103454,1,Atxn7l1-201,15017,Atxn7l1-201;Atxn7l1-203;Atxn7l1-212;Atxn7l1-206;Atxn7l1-204;Atxn7l1-208,Atxn7l1;Atxn7l1;Atxn7l1;Atxn7l1;Atxn7l1;Atxn7l1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,24,380753,ENSMUSG00000020564,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10235,cg14536337,-0.00000908,0.0000125,-0.72649594,0.468082989,loss,ns,-0.0000341,0.0000212,-1.604152802,0.109698651,neg,ns,-0.02828413,0.006222657,-4.545345857,0.00000787,neg,ns,5.103933838,0.000686015,0.000213997,3.205726065,0.001487718,pos,ns,0.187428134,Hoxa13,Hoxa13_Intergenic_downstream,6,52257206,52257255,52257206,52257207,50,+,CGTCAAGGTCAAGGTTTAAGGCCTTTCGTAGTCCTGTCATTTCAACAAAT,Downstream (<1kb),6,52258871,52260802,1932,2,Hoxa13-202,3547,Hoxa13-203;Hoxa13-201;Hoxa13-202;Hoxa13-204;Hoxa13-205;Hoxa13-206,Hoxa13;Hoxa13;Hoxa13;Hoxa13;Hoxa13;Hoxa13,0;0;0;0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,2,12,15398,ENSMUSG00000038203,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
10609,cg02037503,0.0000112,0.00000505,2.217967062,0.027281652,gain,ns,0.0000138,0.00000858,1.604007937,0.10973059,pos,ns,0.005389727,0.002514667,2.143316336,0.032865723,pos,ns,1.483256814,-0.000105086,0.0000865,-1.215154038,0.225232021,neg,ns,0.107805029,Acin1,Acin1_fiveUTR,14,54653632,54653681,54653632,54653633,50,-,CGGCAGCGATCAGCCGGAGACATGCAGGGGAGCCATCTTGCCACTTACCC,Promoter (<=1kb),14,54642161,54653667,11507,2,Acin1-216,0,Acin1-208;Acin1-216;Acin1-202;Acin1-201;Acin1-219;Acin1-218;Acin1-221;Acin1-224;Acin1-203;Acin1-225;Acin1-204;Acin1-226;Acin1-213;Acin1-214;Acin1-209;Acin1-220,Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,7,22,56215,ENSMUSG00000022185,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5344,cg08714660,0.0000518,0.0000176,2.948978649,0.003430754,gain,ns,0.0000479,0.0000299,1.603843256,0.109766908,pos,ns,0.031248873,0.008749141,3.571650568,0.000411085,pos,ns,3.386067988,-0.001007582,0.000300882,-3.348759144,0.000911899,neg,ns,0.319518297,Fam53a,Fam53a_Intergenic_downstream,5,33540302,33540351,33540350,33540351,50,-,GGTAATATGTGCTCATTACAAAAGCAAAACAGATCTGGCATGAATAAACG,Distal Intergenic,5,33600356,33628912,28557,2,Fam53a-203,88610,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,13,13,74504,ENSMUSG00000037339,conserved gene but different region,5,33540258,33540439,182,*,182,14,0.5,1.230917874,0.076923077,1.99E-09,CpGisland,TRUE,U13,Hc-P
25296,cg14824014,-0.0000213,0.00000904,-2.354886665,0.019151497,loss,ns,-0.0000246,0.0000154,-1.603829605,0.109769918,neg,ns,-0.008739209,0.004500979,-1.941623948,0.053088467,neg,ns,1.274999816,0.0000107,0.000154788,0.069195755,0.944878414,pos,ns,0.873007479,Hao1,Hao1_Intron,2,134498389,134498438,134498389,134498390,50,+,CGTTTTCCCAAGGAATGTAAAATTTGACAAATGTAAGGTTTATGATTCAA,"Intron (Hao1-201/Hao1, intron 7 of 7)",2,134497361,134554368,57008,2,Hao1-201,55930,Hao1-201,Hao1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,4,15112,ENSMUSG00000027261,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16471,cg20206664,0.000110256,0.0000201,5.484165955,8.63E-08,gain,yes,-0.0000548,0.0000342,-1.603666326,0.109805937,neg,ns,0.020209789,0.010006171,2.019732507,0.044271201,pos,ns,1.353878692,-0.000409764,0.000344111,-1.190789421,0.234647263,neg,ns,0.366811152,Cntln,Cntln_Intron,4,85076061,85076110,85076109,85076110,50,-,CCTAGCAGAGTGTAGCAACATTTATCCAGGAATTTGTGAAATGTCACTCG,"Intron (Cntln-201/Cntln, intron 18 of 25)",4,84884309,85131921,247613,1,Cntln-201,191752,Cntln-201;Cntln-204,Cntln;Cntln,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,25,338349,ENSMUSG00000038070,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
982,cg04168436,-0.0000106,0.0000056,-1.888578438,0.059881772,loss,ns,0.0000153,0.00000951,1.603642854,0.109811116,pos,ns,-0.002762237,0.002787054,-0.991095622,0.32241184,neg,ns,0.491589018,-0.000118099,0.0000958,-1.232171311,0.218818842,neg,ns,0.867759957,Gm11814,Gm11814_Intergenic_downstream,4,10306707,10306756,10306755,10306756,50,+,CATTTCCTGATTCTGGATTAAGTTCAAGATTTCAAATACAACTGGACTCG,Distal Intergenic,4,10438815,10439743,929,2,Gm11814-201,132987,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,666840,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19996,cg18550773,0.000162809,0.00000963,16.90484767,6.88E-46,gain,yes,-0.0000262,0.0000164,-1.603637909,0.109812207,neg,ns,0.012823893,0.004793404,2.675320813,0.007862254,pos,ns,2.10445293,-0.000210842,0.000164845,-1.27903448,0.201841502,neg,ns,0.15175632,Nhlh2,Nhlh2_Intergenic_downstream,3,102023459,102023508,102023459,102023460,50,-,CGAGCGAATGGAACCAAATTACAGGCCCGTCTGTCACCTCCTCTGGGAGA,Distal Intergenic,3,102010155,102014506,4352,1,Nhlh2-203,13353,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,5,18072,ENSMUSG00000048540,conserved gene and region,3,102023357,102023691,335,*,335,30,0.680597015,0.806128178,0.089552239,1.24E-21,CpGisland,TRUE,U3,Pr-B
21571,cg07956500,0.000103451,0.0000104,9.903366387,2.87E-20,gain,yes,-0.0000285,0.0000177,-1.603574918,0.109826105,neg,ns,0.013502269,0.005199126,2.597026578,0.009851844,pos,ns,2.00648249,-0.000502485,0.000178798,-2.810355098,0.005263466,neg,ns,0.500761971,Celsr2,Celsr2_threeUTR,3,108392621,108392670,108392621,108392622,50,-,CGGCCCAGGGTTAATGCAGGAAGTTAAAGAAGAGAAATCTGGAGAGGCAG,3' UTR,3,108390851,108415552,24702,2,Celsr2-201,22882,Celsr2-201;Celsr2-206;Celsr2-205;Celsr2-203;Celsr2-204;Celsr2-202;Psrc1-201;Psrc1-202,Celsr2;Celsr2;Celsr2;Celsr2;Celsr2;Celsr2;Psrc1;Psrc1,0;0;0;0;1632;3823;8782;8762,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,4,53883,ENSMUSG00000068740,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
21364,cg22905206,0.00000659,0.00000561,1.176401173,0.24033716,gain,ns,0.0000153,0.00000952,1.603566532,0.109827956,pos,ns,-0.001695492,0.002789684,-0.60777221,0.543783535,neg,ns,0.264573946,0.0000276,0.0000959,0.287677415,0.773785899,pos,ns,0.897973614,Myf5,Myf5_Exon,10,107485706,107485755,107485754,107485755,50,-,TGCAGGCTTTGCAGGCCCACATGAGGCAGTGACCAGCCTGGTGGTGGCCG,Promoter (<=1kb),10,107482908,107486134,3227,2,Myf5-201,379,Myf5-201,Myf5,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,17877,ENSMUSG00000000435,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19054,cg01727347,-0.0000907,0.0000275,-3.303035865,0.001068336,loss,ns,-0.0000748,0.0000467,-1.603560791,0.109829223,neg,ns,0.059571873,0.013669354,4.358060474,0.0000179,pos,ns,4.747927871,-0.003037057,0.000470088,-6.460615299,4.03E-10,neg,yes,0.528229,Cdk12,Cdk12_Intergenic_downstream,11,98290098,98290147,98290146,98290147,50,+,GAGGCGTTCCTGCCAAATCCATCCCAACATCTTGGCCTGGCATCAGGGCG,Distal Intergenic,11,98263502,98268011,4510,1,Cdk12-204,26596,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,25,69131,ENSMUSG00000003119,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25509,cg14082613,-0.00000548,0.00000237,-2.316301789,0.021193702,loss,ns,-0.00000645,0.00000402,-1.603518795,0.10983849,neg,ns,-0.000187142,0.00117849,-0.158798121,0.87393133,neg,ns,0.058522691,-0.00000286,0.0000405,-0.070508351,0.943834517,neg,ns,0.938351618,Mgmt,Mgmt_Intron,7,137039876,137039925,137039924,137039925,50,+,ACACTTTCCACCTTTTGCTGTCAAGGGAAAATATTTCATCTTGCACCGCG,"Intron (Mgmt-201/Mgmt, intron 2 of 4)",7,136894614,137130266,235653,1,Mgmt-201,145262,Mgmt-201,Mgmt,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,16,17314,ENSMUSG00000054612,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2109,cg09570630,0.000212632,0.0000232,9.179057529,6.33E-18,gain,yes,-0.0000631,0.0000394,-1.603446014,0.109854552,neg,ns,0.020470365,0.011529437,1.775487002,0.076798538,pos,ns,1.114647049,0.0000456,0.000396496,0.115040425,0.908487559,pos,ns,0.327657409,Skida1,Skida1_Promoter,2,18050624,18050673,18050624,18050625,50,+,CGATGTCTAGTTCTTGCCTTTGAAATCTAAGGCTAGCATTTCCATCCAAG,Promoter (1-2kb),2,18044083,18049051,4969,2,Skida1-202,-1573,Mllt10-201;Skida1-202;Skida1-201;Skida1-203;Skida1-204,Mllt10;Skida1;Skida1;Skida1;Skida1,0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,12,31,72668,ENSMUSG00000054074,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11474,cg06078326,0.000075,0.0000144,5.192718192,0.000000376,gain,yes,-0.0000393,0.0000245,-1.603437206,0.109856496,neg,ns,0.027022979,0.007187531,3.75970239,0.000203296,pos,ns,3.691870785,-0.000785296,0.000247179,-3.177037717,0.001637802,neg,ns,0.261266772,Clk1,Clk1_Exon,1,58420243,58420292,58420291,58420292,50,+,AAGATCATCCAGCCAATCAATATACCCGAGTGAATTCAGGGCAGAATACG,"Exon (Clk1-212/Clk1, exon 3 of 11)",1,58410189,58424066,13878,2,Clk1-212,3774,Clk1-212;Clk1-202;Clk1-201;Clk1-210;Clk1-211;Clk1-213;Clk1-206;Clk1-204;Clk1-205;Clk1-209,Clk1;Clk1;Clk1;Clk1;Clk1;Clk1;Clk1;Clk1;Clk1;Clk1,0;-3478;0;0;0;0;0;0;-2817;3774,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,12747,ENSMUSG00000026034,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8763,cg24133289,0.00000357,0.0000106,0.337635076,0.735866716,gain,ns,0.0000288,0.000018,1.603288264,0.109889372,pos,ns,0.005180727,0.005262826,0.984400317,0.32568639,pos,ns,0.48720039,-0.000414464,0.000180988,-2.290008579,0.022692293,neg,ns,0.753882321,Dscaml1,Dscaml1_Intron,9,45720338,45720387,45720338,45720339,50,+,CGTTAGGATGATGTATTATCATTTAAATGCTCATAAAAATTAGAGTTGCC,"Intron (Dscaml1-211/Dscaml1, intron 17 of 32)",9,45430291,45753262,322972,1,Dscaml1-211,290047,Dscaml1-211;Dscaml1-201;Dscaml1-210;Dscaml1-207,Dscaml1;Dscaml1;Dscaml1;Dscaml1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,32,114873,ENSMUSG00000032087,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3201,cg25768681,0.0000859,0.00000662,12.97390598,4.84E-31,gain,yes,0.000018,0.0000113,1.603158713,0.109917974,pos,ns,0.012911904,0.003296863,3.9164216,0.000110577,pos,ns,3.956333739,-0.0001671,0.000113379,-1.473817818,0.141545361,neg,ns,0.131056241,Fezf1,Fezf1_Exon,6,23246015,23246064,23246063,23246064,50,+,CCTGGTGGAAAGCCTTGTTGCAGATATTGCACTTGAACTGCTTCTCCCCG,"Exon (Fezf1-201/Fezf1, exon 4 of 4)",6,23245044,23248362,3319,2,Fezf1-201,2298,Fezf1-201,Fezf1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,7,73191,ENSMUSG00000029697,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
5743,cg12067414,0.0000383,0.0000122,3.142502949,0.001837005,gain,ns,0.0000332,0.0000207,1.603138961,0.109922335,pos,ns,0.019820901,0.006061763,3.269824522,0.001197229,pos,ns,2.921822769,-0.000199193,0.000208464,-0.955530847,0.340053846,neg,ns,0.2345615,Sox2,Sox2_Exon,3,34651030,34651079,34651030,34651031,50,-,CGCCCTGCAGTACAACTCCATGACCAGCTCGCAGACCTACATGAACGGCT,Promoter (<=1kb),3,34650405,34652461,2057,1,Sox2-201,625,Sox2-201,Sox2,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,62,20674,ENSMUSG00000074637,mapped to different genes,3,34650151,34651388,1238,*,1238,126,0.673667205,0.899335824,0.10177706,2.40E-96,CpGisland,TRUE,NA,NRS
6251,cg02553441,-0.0000513,0.0000153,-3.355102827,0.000891963,loss,ns,-0.0000416,0.000026,-1.603092132,0.109932676,neg,ns,0.043147173,0.007605414,5.673218233,3.22E-08,pos,ns,7.492764997,-0.00104762,0.00026155,-4.005434253,0.0000776,neg,ns,0.640952877,Hectd2,Hectd2_threeUTR,19,36606412,36606461,36606460,36606461,50,+,CACTGCCATTGGTTTAGCAGCTTTAAATGTGATAACTATTCTGAATTCCG,3' UTR,19,36554639,36621132,66494,1,Hectd2-202,51773,Hectd2-202;Hectd2-208;Hectd2-201;Hectd2-207;Hectd2-209;Hectd2-204,Hectd2;Hectd2;Hectd2;Hectd2;Hectd2;Hectd2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,2,226098,ENSMUSG00000041180,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15010,cg01592346,-0.00000631,0.00000637,-0.99088819,0.322512966,loss,ns,0.0000173,0.0000108,1.603081927,0.109934929,pos,ns,0.006455147,0.003168478,2.03730206,0.042468818,pos,ns,1.37192983,-0.000222114,0.000108964,-2.038424514,0.04235582,neg,ns,0.86563498,Gm6317,Gm6317_Intergenic_upstream,13,78446427,78446476,78446427,78446428,50,-,CGAGTTTTACAACATTTCTATCAAGAGAAACTGTTTAGCATAACTGACTC,Distal Intergenic,13,78372987,78379128,6142,2,Gm6317-201,-67348,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,11,622365,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15459,cg21854393,0.000171192,0.000026,6.57201902,2.10E-10,gain,yes,-0.0000709,0.0000443,-1.602876055,0.109980399,neg,ns,0.035942918,0.012964631,2.772382601,0.005901432,pos,ns,2.229042609,-0.000571425,0.000445853,-1.281645352,0.200924849,neg,ns,0.564253202,Srsf5,Srsf5_Exon,12,80948527,80948576,80948575,80948576,50,-,TGCGATTAAAGGCTTCCATCGATTGGGTAGTGTCCTTCAAGTGGGTGGCG,"Exon (Srsf5-207/Srsf5, exon 5 of 7)",12,80945504,80950507,5004,1,Srsf5-201,3023,Slc10a1-202;Slc10a1-201;Srsf5-201;Srsf5-204;Srsf5-207;Srsf5-202;Srsf5-203;Srsf5-212;Srsf5-211;Srsf5-206;Srsf5-208;Srsf5-210;Srsf5-205;Srsf5-209,Slc10a1;Slc10a1;Srsf5;Srsf5;Srsf5;Srsf5;Srsf5;Srsf5;Srsf5;Srsf5;Srsf5;Srsf5;Srsf5;Srsf5,20129;19503;0;0;0;0;0;0;2993;0;2957;2948;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,Exon,10,10,20384,ENSMUSG00000021134,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20677,cg07330072,0.000000251,0.00000503,0.049889579,0.96024251,gain,ns,-0.0000137,0.00000854,-1.602819554,0.109992881,neg,ns,-0.002466539,0.002503065,-0.985407635,0.325192345,neg,ns,0.487859686,0.0000654,0.0000861,0.759408891,0.44818507,pos,ns,0.794336057,Dab1,Dab1_Intron,4,104452802,104452851,104452802,104452803,50,-,CGAGCGAGCTCTCTATCTTTGGAAATGTTCTAGCAGAGACTGGATAGCCA,"Intron (Dab1-202/Dab1, intron 3 of 9)",4,103619665,104680382,1060718,1,Dab1-202,833137,Dab1-202;Dab1-206;Dab1-207;Dab1-203,Dab1;Dab1;Dab1;Dab1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,13,13131,ENSMUSG00000028519,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4005,cg19382802,-0.0000105,0.00000282,-3.722053972,0.000234619,loss,ns,-0.00000767,0.00000478,-1.602775614,0.110002589,neg,ns,-0.004491066,0.001401763,-3.203868973,0.001497034,neg,ns,2.824768216,0.000122174,0.0000482,2.534388199,0.011756289,pos,ns,0.921872188,Inpp5e,Inpp5e_Exon,2,26400417,26400466,26400465,26400466,50,+,GTGAAGCTGATGCCCAAGGCCCCCTTGGTCTTGATCTGAGACACGATGCG,"Exon (Inpp5e-205/Inpp5e, exon 5 of 10)",2,26396249,26409200,12952,2,Inpp5e-205,8734,Inpp5e-205;Inpp5e-203;Inpp5e-201;Inpp5e-202;Inpp5e-206;Inpp5e-207;Inpp5e-204;Pmpca-201,Inpp5e;Inpp5e;Inpp5e;Inpp5e;Inpp5e;Inpp5e;Inpp5e;Pmpca,0;-946;0;0;0;0;0;11078,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,64436,ENSMUSG00000026925,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21828,cg27564788,-0.0000031,0.00000187,-1.658905841,0.098146119,loss,ns,0.00000509,0.00000318,1.602754657,0.110007219,pos,ns,-0.001561642,0.000930546,-1.678199935,0.09431584,neg,ns,1.025415363,0.0000861,0.000032,2.690769922,0.007515339,pos,ns,0.974412722,Lmo1,Lmo1_Exon,7,109221218,109221267,109221218,109221219,50,+,CGCAGGCAGGCCTGCGTGCGGACAGATTTAATATCGTTTGTAAATATGAT,"Exon (Gm45024-201/Gm45024-201, exon 2 of 3)",7,109138675,109175207,36533,2,Lmo1-202,-46011,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,66,109594,ENSMUSG00000036111,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12827,cg05141984,-0.0000178,0.00000533,-3.333164546,0.000962684,loss,ns,-0.0000145,0.00000906,-1.602570959,0.110047812,neg,ns,-0.008547559,0.002653892,-3.220762941,0.001414239,neg,ns,2.849477181,0.0000291,0.0000913,0.318456933,0.750352799,pos,ns,0.872258394,Ebf2,Ebf2_Intron,14,67261940,67261989,67261940,67261941,50,+,CGGGGAGGGATAGAGTCATTAGGTGTGCACTGTGTTTAATATTTGGTCAT,"Intron (Ebf2-201/Ebf2, intron 7 of 16)",14,67233292,67429777,196486,1,Ebf2-201,28648,Ebf2-201;Ebf2-203;Ebf2-202,Ebf2;Ebf2;Ebf2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,21,13592,ENSMUSG00000022053,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24614,cg04248528,0.00000155,0.0000231,0.06685794,0.946737895,gain,ns,-0.0000629,0.0000393,-1.602384896,0.11008894,neg,ns,0.035564751,0.011504654,3.091335976,0.002173538,pos,ns,2.662832766,-0.001129474,0.000395644,-2.85477202,0.004597069,neg,ns,0.463193875,Kif5a,Kif5a_Exon,10,127231408,127231457,127231456,127231457,50,-,TTCAGTGCACCCTCCAGGGCCTTAACTCTCTCAGCCGTAGCCCTAAGTCG,"Exon (Kif5a-201/Kif5a, exon 24 of 29)",10,127225696,127263348,37653,2,Kif5a-201,31891,Kif5a-201;Kif5a-202,Kif5a;Kif5a,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,8,16572,ENSMUSG00000074657,conserved gene and region,10,127231443,127231578,136,*,136,10,0.551470588,0.967283073,0.073529412,0.00000115,CpGisland,TRUE,NA,NRS
22699,cg25465769,-0.000087,0.0000239,-3.638663102,0.000320929,loss,ns,-0.0000651,0.0000406,-1.602300507,0.110107597,neg,ns,-0.003062684,0.011905289,-0.257254096,0.797153295,neg,ns,0.098458154,-0.000628511,0.000409422,-1.535117641,0.125774887,neg,ns,0.743801444,Sox6,Sox6_Intron,7,115734262,115734311,115734310,115734311,50,+,ACATCAGAACCATTCATCATAATATAATTGCAAGTTGTCAGTCAGGGCCG,"Intron (Sox6-210/Sox6, intron 4 of 15)",7,115470872,116031047,560176,2,Sox6-210,296736,Sox6-210;Sox6-201;Sox6-202;Sox6-204;Sox6-205;Sox6-203;Sox6-212;Sox6-206;Sox6-209;Sox6-214,Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,37,57,20679,ENSMUSG00000051910,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15179,cg22929401,-0.00000757,0.0000102,-0.742133755,0.458568216,loss,ns,0.0000277,0.0000173,1.60223385,0.110122336,pos,ns,0.000233986,0.005073474,0.046119575,0.963244639,pos,ns,0.016263399,0.000224549,0.000174476,1.286988278,0.199058518,pos,ns,0.549188961,Kcnj4,Kcnj4_Promoter,15,79510120,79510169,79510168,79510169,50,+,AGTCACCAGGGTGGAATATTTTAGCACCTATAGAAAAACCGCCACAGACG,Promoter (4-5kb),15,79483714,79505241,21528,2,Kcnj4-201,-4879,Kcnj4-201,Kcnj4,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,9,16520,ENSMUSG00000044216,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
644,cg26554251,0.00000675,0.00000142,4.744679617,0.00000319,gain,ns,0.00000387,0.00000242,1.602008457,0.110172186,pos,ns,0.000342208,0.000707841,0.483453347,0.629115168,pos,ns,0.201269844,0.00000565,0.0000243,0.232080989,0.816628241,pos,ns,0.036997255,2700081O15Rik,2700081O15Rik_Promoter,19,7417540,7417589,7417540,7417541,50,-,CGCGGCCCCTTTAAATTTACCCAGGAGCCCTTAAAGGAGCCCCAGGGGCC,Promoter (<=1kb),19,7417625,7425904,8280,1,2700081O15Rik-202,-85,2700081O15Rik-202;2700081O15Rik-205;2700081O15Rik-204;2700081O15Rik-206;2700081O15Rik-201;2700081O15Rik-203,2700081O15Rik;2700081O15Rik;2700081O15Rik;2700081O15Rik;2700081O15Rik;2700081O15Rik,0;-1128;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,2,108899,ENSMUSG00000053080,conserved gene and region,19,7416806,7417543,738,*,738,84,0.737127371,0.842465753,0.113821138,5.65E-69,CpGisland,TRUE,U2,Pr-W
24794,cg00548487,-0.0000122,0.00000464,-2.628952811,0.008991677,loss,ns,-0.0000126,0.00000788,-1.601884117,0.110199694,neg,ns,-0.001469835,0.002308983,-0.636572321,0.524873212,neg,ns,0.279945592,-0.0000778,0.0000794,-0.979752204,0.327972433,neg,ns,0.87407124,Smarcc2,Smarcc2_Exon,10,128487998,128488047,128487998,128487999,50,+,CGGGCACCCAGGCGTGGCGGGTAATGCTCCTTTGGGTTTGCCTTTTGGCA,"Exon (Smarcc2-201/Smarcc2, exon 27 of 28)",10,128459248,128490482,31235,1,Smarcc2-205,28750,Myl6-201;Myl6-213;Myl6-212;Myl6-202;Myl6-206;Myl6-209;Myl6-211;Myl6-205;Myl6-203;Myl6-214;Myl6-208;Myl6-215;Myl6-207;Myl6-210;Myl6-204;Smarcc2-205;Smarcc2-201;Smarcc2-202;Smarcc2-203,Myl6;Myl6;Myl6;Myl6;Myl6;Myl6;Myl6;Myl6;Myl6;Myl6;Myl6;Myl6;Myl6;Myl6;Myl6;Smarcc2;Smarcc2;Smarcc2;Smarcc2,0;0;0;0;0;0;0;0;0;0;0;5782;5746;6098;5527;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,16,68094,ENSMUSG00000025369,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19410,cg18081750,-0.00000226,0.00000101,-2.248367571,0.025255054,loss,ns,0.00000274,0.00000171,1.601844977,0.110208354,pos,ns,0.000412086,0.000500673,0.82306507,0.411103684,pos,ns,0.386048631,-0.0000234,0.0000172,-1.361817086,0.174244427,neg,ns,0.023559274,Dusp6,Dusp6_Promoter,10,99263042,99263091,99263090,99263091,50,+,GTTGCAGCTTGTTTGCACTGGGGCTTATCCGGAGCGGAAATTCCTTTCCG,Promoter (<=1kb),10,99263231,99267488,4258,1,Dusp6-201,-140,Dusp6-201;Dusp6-204;Dusp6-202;Dusp6-203,Dusp6;Dusp6;Dusp6;Dusp6,0;0;0;-2550,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,6,8,67603,ENSMUSG00000019960,conserved gene but different region,10,99263000,99263091,92,*,92,8,0.608695652,1.001360544,0.086956522,0.00000628,CpGisland,TRUE,U1,Pr-A
6133,cg23589620,-0.00000709,0.00000656,-1.080168149,0.280906953,loss,ns,0.0000179,0.0000111,1.601781124,0.110222483,pos,ns,0.004360178,0.003265827,1.335091568,0.182825961,pos,ns,0.737962134,-0.00018828,0.000112312,-1.676408611,0.094666306,neg,ns,0.880264615,Bzw2,Bzw2_fiveUTR,12,36134911,36134960,36134911,36134912,50,+,CGCTGGCCTGTTAGCACTGGCTTCTGATGCTTATTCATAAAATTTCTGAA,5' UTR,12,36091835,36156825,64991,2,Bzw2-201,21865,Bzw2-201;Bzw2-205;Bzw2-204;Bzw2-210;Bzw2-203;Bzw2-207;Bzw2-208;Bzw2-209;Bzw2-202,Bzw2;Bzw2;Bzw2;Bzw2;Bzw2;Bzw2;Bzw2;Bzw2;Bzw2,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,3,66912,ENSMUSG00000020547,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7223,cg01702252,-0.0000203,0.00000994,-2.039852013,0.042212484,loss,ns,0.0000271,0.0000169,1.601754594,0.110228354,pos,ns,-0.003872953,0.0049495,-0.782493876,0.434521688,neg,ns,0.361988542,-0.0000209,0.000170213,-0.122679183,0.902440642,neg,ns,0.855125979,Gria3,Gria3_Intron,X,41669277,41669326,41669325,41669326,50,+,TGTGTGCCGATTACTCAAAGCGATATGGGCAGGCCCTGGTAAATATAGCG,"Intron (Gria3-202/Gria3, intron 15 of 16)",20,41401128,41676585,275458,1,Gria3-202,268149,Gria3-202;Gria3-201;Gria3-208;Gria3-206;Gria3-209,Gria3;Gria3;Gria3;Gria3;Gria3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,26,53623,ENSMUSG00000001986,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2663,cg27507336,0.0000363,0.00000616,5.892806633,9.90E-09,gain,yes,0.0000168,0.0000105,1.601729197,0.110233974,pos,ns,0.005175329,0.003066764,1.687553798,0.092502731,pos,ns,1.033845445,-0.00013779,0.000105466,-1.306486995,0.192355454,neg,ns,0.168051876,Ahi1,Ahi1_Exon,10,21055050,21055099,21055050,21055051,50,-,CGAGTGTTTTTCAAAGATAATGAAGACTGGTGGTATGGCAGCATAGGAAA,"Exon (Ahi1-201/Ahi1, exon 20 of 24)",10,20952547,21080429,127883,1,Ahi1-201,102503,Ahi1-201;Ahi1-203;Ahi1-206;Ahi1-204;Ahi1-202,Ahi1;Ahi1;Ahi1;Ahi1;Ahi1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,52906,ENSMUSG00000019986,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2124,cg06873806,-0.00000304,0.00000439,-0.692189536,0.489336446,loss,ns,0.0000119,0.00000745,1.601625215,0.110256988,pos,ns,0.003921743,0.002182487,1.796915171,0.073322384,pos,ns,1.134763425,-0.00000121,0.0000751,-0.016112386,0.987155097,neg,ns,0.058724518,Bhlhe22,Bhlhe22_fiveUTR,3,18054270,18054319,18054270,18054271,50,+,CGGCCAGATAGCGCCTGCGATTGTTTGTTACCGTTTTAATCCTATTAATT,Promoter (<=1kb),3,18054174,18057517,3344,1,Bhlhe22-201,96,Bhlhe22-201,Bhlhe22,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,9,22,59058,ENSMUSG00000025128,mapped to different genes,3,18054268,18054363,96,*,96,8,0.458333333,1.590062112,0.083333333,0.00000859,CpGisland,TRUE,U3,Pr-B
1846,cg07556197,0.0000249,0.0000127,1.953163492,0.051699652,gain,ns,-0.0000347,0.0000217,-1.601565334,0.110270243,neg,ns,0.006785145,0.006345563,1.069273936,0.285778131,pos,ns,0.543971009,-0.000421479,0.000218223,-1.931410929,0.05434363,neg,ns,0.285781844,Gli3,Gli3_Intron,13,15544300,15544349,15544348,15544349,50,+,TTGTAATTGAAGCTGCTGTTGACCTTGCTTGGGGACCATTTGTAAAACCG,"Intron (Gli3-202/Gli3, intron 2 of 11)",13,15463235,15715091,251857,1,Gli3-202,81065,Gli3-202;Gli3-204;Gli3-203;Gli3-201,Gli3;Gli3;Gli3;Gli3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,19,21,14634,ENSMUSG00000021318,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21752,cg13090801,0.000044,0.00000915,4.804109632,0.00000243,gain,ns,-0.0000249,0.0000155,-1.60154324,0.110275134,neg,ns,0.002609462,0.004554749,0.572910185,0.567120816,pos,ns,0.246324412,-0.000317524,0.000156637,-2.027128467,0.043504726,neg,ns,0.676970004,Zfhx3,Zfhx3_Exon,8,108956634,108956683,108956682,108956683,50,-,CGAGTCGGCCTTGCACAAACACAGAACAATCACGAGAGCAGCAAGAAACG,"Exon (Zfhx3-204/Zfhx3, exon 16 of 16)",8,107942644,108961630,1018987,1,Zfhx3-204,1013990,Zfhx3-204;Zfhx3-201,Zfhx3;Zfhx3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,46,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22725,cg08971779,-0.0000168,0.0000104,-1.618004645,0.106678581,loss,ns,0.0000283,0.0000177,1.601162075,0.110359539,pos,ns,0.000352214,0.005177126,0.068032759,0.945803416,pos,ns,0.024199122,0.000526719,0.000178041,2.958413932,0.003330285,pos,ns,0.310060266,Meis2,Meis2_Intergenic_downstream,2,115859367,115859416,115859415,115859416,50,+,CAGAGAGAATCATTATGTGGGTGACATTGATAAATGATCGCCCAGGAACG,Distal Intergenic,2,115864227,115868867,4641,2,Meis2-219,9451,Meis2-201;Meis2-203;Meis2-205;Meis2-206;Meis2-204;Meis2-202;Meis2-208;Meis2-219;Meis2-216;Meis2-218,Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2,0;0;0;0;0;0;0;0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,97,17536,ENSMUSG00000027210,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
20517,cg08505473,0.0000122,0.00000306,3.985814109,0.0000839,gain,ns,-0.00000832,0.0000052,-1.600830393,0.110433028,neg,ns,0.002751459,0.001522633,1.807040369,0.071725409,pos,ns,1.144326967,-0.000176728,0.0000524,-3.375042317,0.000831913,neg,ns,0.039689323,Prima1,Prima1_Promoter,12,103242764,103242813,103242812,103242813,50,-,GCTGCAGTGATTCCTCGTCTCCATCTAGCGAGGCTATTGTGTATTGGGCG,Promoter (<=1kb),12,103196908,103242150,45243,2,Prima1-201,-663,Prima1-203;Prima1-201;Prima1-205,Prima1;Prima1;Prima1,-618;-614;-636,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,2,170952,ENSMUSG00000041669,conserved gene and region,12,103242159,103242845,687,*,687,80,0.714701601,0.911987256,0.116448326,1.30E-66,CpGisland,TRUE,U13,Hc-P
15416,cg06411936,0.0000819,0.0000217,3.782189542,0.000186517,gain,ns,-0.0000589,0.0000368,-1.600775339,0.110445229,neg,ns,0.01230213,0.010779952,1.141204505,0.25466563,pos,ns,0.594029665,-0.000715506,0.000370722,-1.930034826,0.054514638,neg,ns,0.584639587,Tnrc6b,Tnrc6b_Exon,15,80876329,80876378,80876329,80876330,50,+,CGAAACCAAGTTTAAGCCAACCAACGGCCGCCAGCCCAATTGGCAGCTCT,"Exon (Tnrc6b-201/Tnrc6b, exon 7 of 25)",15,80711313,80941085,229773,1,Tnrc6b-201,165016,Tnrc6b-201;Tnrc6b-204;Tnrc6b-207;Tnrc6b-208,Tnrc6b;Tnrc6b;Tnrc6b;Tnrc6b,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,20,24,213988,ENSMUSG00000047888,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9531,cg12017700,0.0000822,0.00000369,22.27148258,2.74E-66,gain,yes,-0.00001,0.00000627,-1.600682412,0.110465828,neg,ns,0.003789601,0.001837027,2.062899451,0.039954738,pos,ns,1.398431717,0.0000498,0.0000632,0.788737335,0.430868309,pos,ns,0.079170263,Igf2bp3,Igf2bp3_fiveUTR,6,49214914,49214963,49214914,49214915,50,-,CGCTCCGAGTGTCCGGCTTTTTGAATGAGCCACGTGTTCAAACTACAAAT,Promoter (<=1kb),6,49085223,49214957,129735,2,Igf2bp3-201,0,Igf2bp3-201;Igf2bp3-202;Igf2bp3-203,Igf2bp3;Igf2bp3;Igf2bp3,0;-753;-210,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,5,140488,ENSMUSG00000029814,conserved gene but different region,6,49214800,49215683,884,*,884,82,0.622171946,0.999986205,0.092760181,2.09E-59,CpGisland,TRUE,U1,Pr-A
26501,cg11166378,0.0000136,0.00000541,2.522620954,0.012148637,gain,ns,-0.0000147,0.00000919,-1.60066082,0.110470614,neg,ns,0.000766894,0.002692715,0.284803283,0.775985024,pos,ns,0.11014666,-0.000105529,0.0000926,-1.139593888,0.255335301,neg,ns,0.891322979,Ipo8,Ipo8_Exon,6,148824448,148824497,148824448,148824449,50,-,CGAAGTAAACTGGGGGCAAAATTGATAATCTTGTAGGACTGAAATTACAA,Promoter (<=1kb),6,148790945,148824466,33522,2,Ipo8-205,0,Ipo8-201;Ipo8-205;Ipo8-210;Ipo8-206;Ipo8-211,Ipo8;Ipo8;Ipo8;Ipo8;Ipo8,0;0;0;0;-2239,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,320727,ENSMUSG00000040029,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17777,cg23846336,-0.00000116,0.000000817,-1.419463877,0.156768572,loss,ns,-0.00000222,0.00000139,-1.600569048,0.11049096,neg,ns,0.0000388,0.00040675,0.095290439,0.924145704,pos,ns,0.034259551,-0.00000856,0.000014,-0.611790409,0.541124852,neg,ns,0.981977477,Son,Son_threeUTR,16,91662633,91662682,91662633,91662634,50,-,CGCAAAGACACAGACAATCTTCAGAAATGATCTTTTGCCACCGGAGCTTG,3' UTR,16,91647506,91679207,31702,1,Son-203,15127,Son-203;Son-204;Son-202;Son-208;Son-201;Son-205;Son-212;Son-207,Son;Son;Son;Son;Son;Son;Son;Son,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,14,31,20658,ENSMUSG00000022961,conserved gene and region,16,91662523,91662634,112,*,112,9,0.508928571,1.26,0.080357143,0.00000238,CpGisland,TRUE,U10,Tr-S
25591,cg05066539,-0.000000559,0.00000148,-0.378220837,0.70552541,loss,ns,0.00000402,0.00000251,1.60053635,0.11049821,pos,ns,0.001396827,0.000736038,1.89776434,0.058656007,pos,ns,1.231687504,-0.0000209,0.0000253,-0.825327168,0.409820528,neg,ns,0.037090377,Ache,Ache_Exon,5,137294161,137294210,137294161,137294162,50,+,CGCTGGAGCTCCTACATGGTGCACTGGAAGAACCAGTTCGACCACTACAG,"Exon (Ache-201/Ache, exon 5 of 5)",5,137288277,137294466,6190,1,Ache-201,5884,Ache-204;Ache-206;Ache-207;Ache-201;Ache-209;Ache-202;Ache-208;Ache-203;Ache-205;Srrt-201;Srrt-212;Srrt-209;Srrt-211;Srrt-202;Srrt-216;Srrt-205;Srrt-206;Srrt-208;Srrt-217;Srrt-207;Srrt-213;Srrt-215;Srrt-204;Ufsp1-201;Ufsp1-202,Ache;Ache;Ache;Ache;Ache;Ache;Ache;Ache;Ache;Srrt;Srrt;Srrt;Srrt;Srrt;Srrt;Srrt;Srrt;Srrt;Srrt;Srrt;Srrt;Srrt;Srrt;Ufsp1;Ufsp1,6642;6395;6395;0;0;0;5876;5073;4914;0;0;0;0;5435;3215;2724;3007;2643;3357;4337;5799;6108;5676;-419;-832,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,11423,ENSMUSG00000023328,conserved gene but different region,5,137293983,137294222,240,*,240,20,0.625,0.868778281,0.083333333,5.92E-14,CpGisland,TRUE,NA,NRS
5414,cg05060618,-0.000021,0.0000122,-1.713944512,0.087538506,loss,ns,0.0000332,0.0000208,1.600166681,0.1105802,pos,ns,0.005965112,0.006086205,0.980103678,0.327799205,pos,ns,0.484392104,-0.000277693,0.000209304,-1.326743185,0.185570118,neg,ns,0.730800763,Ccdc39,Ccdc39_Intron,3,33882789,33882838,33882789,33882790,50,+,CGTTTACAACAGTGGTATAGAATTGTATAGAGATGCAAAATTTTTCAAGA,"Intron (4930431L21Rik-202/4930431L21Rik-202, intron 1 of 2)",3,33837994,33844310,6317,2,Ccdc39-202,-38479,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,5,51938,ENSMUSG00000027676,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12546,cg13208500,-0.00000565,0.00000394,-1.434731879,0.152371567,loss,ns,0.0000107,0.00000669,1.60016313,0.110580987,pos,ns,0.006922258,0.001960576,3.530725931,0.000477314,pos,ns,3.321195517,-0.000196079,0.0000674,-2.908140207,0.003898375,neg,ns,0.883156488,Nedd4l,Nedd4l_fiveUTR,18,65083511,65083560,65083559,65083560,50,+,ATCATGCCTGGAATGCCGCTTGCCACTTGGGTTATTTCTGCTATCTGTCG,5' UTR,18,64887705,65213404,325700,1,Nedd4l-215,195806,Nedd4l-215;Nedd4l-221;Nedd4l-223;Nedd4l-218;Nedd4l-210;Nedd4l-205;Nedd4l-203;Nedd4l-202;Nedd4l-228;Nedd4l-225;Nedd4l-229;Nedd4l-206;Nedd4l-234;Nedd4l-201;Nedd4l-233;Nedd4l-208;Nedd4l-211;Nedd4l-220;Nedd4l-204;Nedd4l-224;Nedd4l-207;Nedd4l-222;Nedd4l-235,Nedd4l;Nedd4l;Nedd4l;Nedd4l;Nedd4l;Nedd4l;Nedd4l;Nedd4l;Nedd4l;Nedd4l;Nedd4l;Nedd4l;Nedd4l;Nedd4l;Nedd4l;Nedd4l;Nedd4l;Nedd4l;Nedd4l;Nedd4l;Nedd4l;Nedd4l;Nedd4l,0;0;0;0;0;0;0;0;0;0;0;162382;106680;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,4,83814,ENSMUSG00000024589,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25577,cg26905832,-0.0000721,0.00000974,-7.404754504,1.25E-12,loss,yes,0.0000265,0.0000165,1.599947237,0.110628893,pos,ns,-0.011555478,0.004846836,-2.384128177,0.017721012,neg,ns,1.751511492,0.00024698,0.000166682,1.481744163,0.139424129,pos,ns,0.598419724,Ebf3,Ebf3_Intron,7,137254088,137254137,137254136,137254137,50,+,TGACATGGCCACATATGGCCTCTTCCATCAATCTGACTAATCAAGCATCG,"Intron (Ebf3-204/Ebf3, intron 6 of 15)",7,137193673,137314445,120773,2,Ebf3-204,60308,Ebf3-204;Ebf3-201;Ebf3-202;Ebf3-203;Ebf3-208;Ebf3-205,Ebf3;Ebf3;Ebf3;Ebf3;Ebf3;Ebf3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,62,84,13593,ENSMUSG00000010476,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1995,cg10027065,-0.000029,0.00000687,-4.228670558,0.000031,loss,ns,-0.0000187,0.0000117,-1.599596519,0.110706752,neg,ns,0.006050719,0.003418744,1.769866004,0.077732416,pos,ns,1.109397837,-0.00065163,0.00011757,-5.542471012,6.38E-08,neg,yes,0.669655226,Calm3,Calm3_threeUTR,7,16915405,16915454,16915453,16915454,50,+,CATTGATATATATTTTTCTTCACAGCTTGAACTGAACACAATATTGCCCG,3' UTR,7,16915379,16924114,8736,2,Calm3-201,8660,Calm3-201;Calm3-202;Calm3-203;Calm3-204;Ptgir-201;Ptgir-202,Calm3;Calm3;Calm3;Calm3;Ptgir;Ptgir,0;0;1749;8375;8915;8891,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,12315,ENSMUSG00000019370,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16365,cg05190614,-0.0000157,0.0000117,-1.335388747,0.182728837,loss,ns,-0.0000319,0.00002,-1.599582915,0.110709773,neg,ns,-0.017992313,0.005844804,-3.078343097,0.0022676,neg,ns,2.644433615,0.000857385,0.000201002,4.265547496,0.0000265,pos,ns,0.833728422,Nfix,Nfix_Exon,8,84772283,84772332,84772331,84772332,50,-,CAGCAGTGCCTCGATGAACGGGTGGAACTCATCCTGCAGGCGGCAAGCCG,"Exon (Nfix-204/Nfix, exon 2 of 11)",8,84704712,84773396,68685,2,Nfix-204,1064,Nfix-204;Nfix-201;Nfix-202;Nfix-203;Nfix-205,Nfix;Nfix;Nfix;Nfix;Nfix,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,20,49,18032,ENSMUSG00000001911,conserved gene and region,8,84771960,84772433,474,*,474,36,0.61814346,0.805285512,0.075949367,3.03E-23,CpGisland,TRUE,U13,Hc-P
20195,cg12767263,0.00000785,0.00000107,7.341197151,1.88E-12,gain,yes,-0.0000029,0.00000182,-1.599502594,0.11072761,neg,ns,0.0012415,0.00053194,2.333911987,0.020239109,pos,ns,1.693808614,-0.0000482,0.0000183,-2.635455069,0.008824982,neg,ns,0.015644022,Hoxc12,Hoxc12_fiveUTR,15,102936845,102936894,102936893,102936894,50,+,CCGCGGAAATGGGCGAGCATAATCTCCTGAATCCCGGGTTTGTGGGGCCG,Promoter (<=1kb),15,102936757,102938609,1853,1,Hoxc12-201,88,Hoxc12-201,Hoxc12,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,6,15421,ENSMUSG00000050328,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
11087,cg06947421,0.0000312,0.00000364,8.564311707,5.17E-16,gain,yes,-0.00000989,0.00000619,-1.599391628,0.110752257,neg,ns,0.005791099,0.001812488,3.195109938,0.001541707,pos,ns,2.811998236,-0.000108468,0.0000623,-1.740187252,0.082818495,neg,ns,0.086212515,Nkx2-1,Nkx2-1_fiveUTR,12,56536628,56536677,56536628,56536629,50,+,CGGGAATAACCAAATATCTTTGTTTAAAGTGGTGGCGTAAATGGCCAGTC,Promoter (<=1kb),12,56531958,56536908,4951,2,Nkx2-1-201,231,Nkx2-1-202;Nkx2-1-201,Nkx2-1;Nkx2-1,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,6,29,21869,ENSMUSG00000001496,mapped to different genes,12,56536346,56536691,346,*,346,28,0.61849711,0.84618744,0.080924856,5.59E-19,CpGisland,TRUE,U13,Hc-P
13169,cg11795873,-0.00000788,0.0000027,-2.921022687,0.003744933,loss,ns,0.00000733,0.00000458,1.599324837,0.110767094,pos,ns,-0.000415593,0.001342003,-0.309680835,0.757011739,neg,ns,0.120897386,0.000027,0.0000462,0.584589014,0.559249297,pos,ns,0.937534565,Gm11221,Gm11221_Intergenic_upstream,4,69618319,69618368,69618367,69618368,50,+,CAGATGCATGGCTTCATCGCTTGGGCTTAATGAGGTAAACCAGACCTCCG,Distal Intergenic,4,69691978,69692574,597,1,Gm11221-201,-73610,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,4,622491,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23844,cg13400013,0.0000476,0.00000363,13.11899953,1.42E-31,gain,yes,-0.00000986,0.00000616,-1.599255882,0.110782414,neg,ns,0.006503509,0.00180608,3.60089716,0.00036915,pos,ns,3.43279711,-0.0000705,0.0000621,-1.135256942,0.257144652,neg,ns,0.066358092,En1,En1_Promoter,1,120600234,120600283,120600234,120600235,50,+,CGTCTTGCCAGCGCGATGTGACAGAGCTTTTGACCAGGGTTTTATTCACA,Promoter (2-3kb),1,120602418,120607992,5575,1,En1-201,-2135,En1-201,En1,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,23,36,13798,ENSMUSG00000058665,conserved gene and region,1,120600143,120600235,93,*,93,12,0.602150538,1.425287356,0.129032258,7.57E-11,CpGisland,TRUE,U13,Hc-P
17739,cg05543238,-0.00000216,0.00000155,-1.394566585,0.164145115,loss,ns,0.0000042,0.00000263,1.599194618,0.110796026,pos,ns,0.002848243,0.000769215,3.702793483,0.000252351,pos,ns,3.597995194,-0.0000688,0.0000265,-2.599405037,0.00978531,neg,ns,0.043092668,Gtf2a1,Gtf2a1_Intron,12,91588411,91588460,91588411,91588412,50,-,CGGTGACGTAGGCCTGAAAAGCACCTTCCCATCCTGGCAGAGTCTATATT,"Intron (Gtf2a1-201/Gtf2a1, intron 1 of 8)",12,91555262,91590009,34748,2,Gtf2a1-201,1549,Gtf2a1-201;Gtf2a1-202;Gtf2a1-203,Gtf2a1;Gtf2a1;Gtf2a1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,83602,ENSMUSG00000020962,conserved gene and region,12,91588219,91588418,200,*,200,19,0.605,1.046831956,0.095,2.29E-14,CpGisland,TRUE,U1,Pr-A
15047,cg07600305,-0.0000281,0.00000982,-2.865384129,0.004449666,loss,ns,-0.0000267,0.0000167,-1.599186361,0.110797861,neg,ns,-0.010341664,0.004886365,-2.11643308,0.035104655,neg,ns,1.454635291,0.0000471,0.000168042,0.280341291,0.779402661,pos,ns,0.761803509,Gm6317,Gm6317_Intergenic_upstream,13,78625335,78625384,78625335,78625336,50,-,CGGGTTTAAATGTCTTGTTTTATTTTATACTAAATTATGACCTGGCTGAA,Distal Intergenic,13,78372987,78379128,6142,2,Gm6317-201,-246256,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,11,622365,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22743,cg06620199,-0.00000321,0.00000352,-0.913750176,0.361558257,loss,ns,0.00000955,0.00000597,1.599142404,0.110807629,pos,ns,0.003980393,0.001750065,2.27442529,0.023623466,pos,ns,1.626656376,-0.000178266,0.0000602,-2.961987496,0.003292941,neg,ns,0.912587733,Meis2,Meis2_Intron,2,115897770,115897819,115897770,115897771,50,-,CGCTGCTCATTAACAAACAATACTGCTGTGAAATTGGTTTAATGACAAAG,"Intron (Meis2-201/Meis2, intron 9 of 11)",2,115863064,116065047,201984,2,Meis2-201,167228,Meis2-201;Meis2-203;Meis2-205;Meis2-206;Meis2-204;Meis2-202;Meis2-216,Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,45,97,17536,ENSMUSG00000027210,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4307,cg04123667,-0.0000126,0.00000727,-1.736509129,0.08346728,loss,ns,-0.0000197,0.0000123,-1.599030691,0.110832456,neg,ns,-0.00803338,0.003616821,-2.22111628,0.027065363,neg,ns,1.567586138,0.000160409,0.000124382,1.28964271,0.198136049,pos,ns,0.895302351,Erc2,Erc2_Intron,14,28280883,28280932,28280931,28280932,50,+,ATTTCACATCTGTGCTCTATTTTTAAACATTTATTCTTTAAGTGATAACG,"Intron (Erc2-205/Erc2, intron 17 of 19)",14,27622428,28478535,856108,1,Erc2-205,658455,Erc2-205;Erc2-201;Erc2-210;Erc2-208;Erc2-204,Erc2;Erc2;Erc2;Erc2;Erc2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,14,17,238988,ENSMUSG00000040640,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25323,cg15479466,-0.0000308,0.00000842,-3.661342057,0.000294887,loss,ns,0.0000229,0.0000143,1.598879432,0.110866079,pos,ns,-0.004060585,0.004188562,-0.969446067,0.333078432,neg,ns,0.477453488,0.0000374,0.000144044,0.259509379,0.795414499,pos,ns,0.796431134,Runx3,Runx3_Intergenic_upstream,4,135026265,135026314,135026313,135026314,50,+,AATTGGATTTAATATTTTATGCTGGCGACATGTAATTTACACTCTACCCG,Distal Intergenic,4,135120652,135177990,57339,1,Runx3-201,-94338,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,6,12399,ENSMUSG00000070691,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
25971,cg05899134,-0.00000508,0.00000182,-2.791840964,0.005566255,loss,ns,0.00000494,0.00000309,1.598756275,0.110893461,pos,ns,0.001415264,0.000905137,1.563589951,0.118934124,pos,ns,0.924693522,-0.0000291,0.0000311,-0.933366636,0.351357104,neg,ns,0.947913597,Pdlim5,Pdlim5_threeUTR,3,142303326,142303375,142303374,142303375,50,-,AATCACTGTACGTTAAGAGCACGTGCTGAAACTTCATGGTGCCAGTCACG,3' UTR,3,142239590,142395693,156104,2,Pdlim5-201,92318,Pdlim5-201;Pdlim5-206;Pdlim5-208;Pdlim5-212;Pdlim5-211;Pdlim5-213;Pdlim5-210;Pdlim5-205;Pdlim5-203;Pdlim5-204;Pdlim5-209;Pdlim5-202,Pdlim5;Pdlim5;Pdlim5;Pdlim5;Pdlim5;Pdlim5;Pdlim5;Pdlim5;Pdlim5;Pdlim5;Pdlim5;Pdlim5,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,6,56376,ENSMUSG00000028273,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15725,cg12079147,-0.00000681,0.0000014,-4.851266352,0.00000195,loss,ns,0.00000381,0.00000239,1.598391519,0.11097459,pos,ns,0.001218878,0.000699171,1.743320015,0.082269151,pos,ns,1.084762985,-0.0000153,0.000024,-0.63427433,0.526369574,neg,ns,0.056814409,Phip,Phip_Exon,9,82975104,82975153,82975152,82975153,50,-,CAGGGTCCATCTTCCAGGAACCGGGCGATGAGGAAGTAGAGCTCTGCGCG,Promoter (<=1kb),9,82866159,82975516,109358,2,Phip-201,363,Phip-201;Phip-207;Phip-204;Phip-210;Phip-205;Phip-215,Phip;Phip;Phip;Phip;Phip;Phip,0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,13,83946,ENSMUSG00000032253,conserved gene and region,9,82974706,82975816,1111,*,1111,168,0.765076508,1.034038027,0.151215122,1.08E-161,CpGisland,TRUE,U1,Pr-A
7450,cg11290305,0.000000596,0.00000227,0.262166674,0.793367067,gain,ns,0.00000617,0.00000386,1.59816055,0.111025987,pos,ns,-0.000919638,0.001130888,-0.813199873,0.416727587,neg,ns,0.380147748,0.0000746,0.0000389,1.919440892,0.055846302,pos,ns,0.962718,Grik4,Grik4_Exon,9,42687954,42688003,42687954,42687955,50,+,CGCTGTCTCTGAGAAGCTCAAAGATGTCCACTTCGACCTTGGCCTTGCCC,"Exon (Grik4-202/Grik4, exon 4 of 21)",9,42518135,42944493,426359,2,Grik4-202,256490,Grik4-202;Grik4-201,Grik4;Grik4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,8,110637,ENSMUSG00000032017,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19825,cg22806872,0.00000111,0.00000572,0.194428704,0.845967568,gain,ns,0.0000155,0.00000972,1.598060368,0.111048285,pos,ns,0.001919029,0.002848381,0.6737261,0.500987478,pos,ns,0.300173129,0.0000219,0.000098,0.224008896,0.822897941,pos,ns,0.943589103,Med12,Med12_Exon,X,101281720,101281769,101281768,101281769,50,+,GGTGCTGCTGGGATGCAGGAGGAGTCATGCAGCCATGAGTGCAACCAGCG,"Exon (Med12-204/Med12, exon 16 of 46)",20,101274030,101297465,23436,1,Med12-204,7690,Med12-204;Med12-203;Med12-201;Med12-202;Med12-209;Med12-207;Med12-208,Med12;Med12;Med12;Med12;Med12;Med12;Med12,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,15,15,59024,ENSMUSG00000079487,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17480,cg04601691,-0.000000845,0.0000017,-0.49724774,0.619366844,loss,ns,-0.00000461,0.00000289,-1.597820404,0.111101712,neg,ns,-0.002080197,0.000846083,-2.458620514,0.014493617,neg,ns,1.838823228,0.0000526,0.0000291,1.80836356,0.071518843,pos,ns,0.039697164,Crebzf,Crebzf_threeUTR,7,90444310,90444359,90444358,90444359,50,-,AGGTGATTTCCTTCCTGCCAGGCTCCGTTGTAGGGGTTACAGAACAGTCG,3' UTR,7,90442729,90446104,3376,1,Crebzf-201,1581,Crebzf-201;Crebzf-203;Crebzf-204;Crebzf-205;Crebzf-202;Crebzf-208;Crebzf-207;Crebzf-209;Crebzf-206,Crebzf;Crebzf;Crebzf;Crebzf;Crebzf;Crebzf;Crebzf;Crebzf;Crebzf,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,9,233490,ENSMUSG00000051451,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
27958,cg20941184,-0.00000552,0.000014,-0.394155495,0.69373724,loss,ns,-0.000038,0.0000238,-1.597710803,0.111126121,neg,ns,0.005536922,0.00696571,0.79488275,0.427289848,pos,ns,0.369277425,-0.00085724,0.00023955,-3.578539553,0.000400823,neg,ns,0.265019087,Hsd11b1,Hsd11b1_fiveUTR,1,193242371,193242420,193242371,193242372,50,+,CGGGGGAGGCTGGAGTAGTCTCAGGCAGTGCTAGCCAATTTCCCTGTCAG,Promoter (<=1kb),1,193221634,193242629,20996,2,Hsd11b1-201,209,Hsd11b1-201;Hsd11b1-203;Hsd11b1-205;Hsd11b1-202;Hsd11b1-204;Hsd11b1-207;Hsd11b1-206;Lamb3-209;Lamb3-206;Lamb3-205,Hsd11b1;Hsd11b1;Hsd11b1;Hsd11b1;Hsd11b1;Hsd11b1;Hsd11b1;Lamb3;Lamb3;Lamb3,0;-773;0;0;-1961;-3348;-947;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,1,15483,ENSMUSG00000016194,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3117,cg03698965,-0.00000566,0.00000121,-4.695851536,0.00000399,loss,ns,0.00000327,0.00000205,1.597453082,0.111183534,pos,ns,0.0000575,0.000599763,0.095941665,0.923628894,pos,ns,0.034502489,0.0000244,0.0000206,1.184951065,0.236944402,pos,ns,0.965570353,Lrmda,Lrmda_Intron,14,22814252,22814301,22814300,22814301,50,-,TAAATCCTGTGTTACCATTAAAGAGGCCATTCATCACGCTTCCTAATGCG,"Intron (Lrmda-201/Lrmda, intron 5 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,794540,Lrmda-201;Lrmda-204;Lrmda-206,Lrmda;Lrmda;Lrmda,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26131,cg12185185,-0.00000976,0.00000347,-2.812484614,0.005229615,loss,ns,0.00000941,0.00000589,1.597198726,0.111240221,pos,ns,-0.003577274,0.001726599,-2.071861691,0.039105016,neg,ns,1.40776753,0.000142265,0.0000594,2.395930317,0.01717085,pos,ns,0.951718006,Sox5,Sox5_Intron,6,144166258,144166307,144166306,144166307,50,+,AGGCGTGACAGCGCCAGACTGGAGTCATACGGCTGGTCTCTGAGTCAGCG,"Intron (Sox5-201/Sox5, intron 1 of 14)",6,143828425,144209480,381056,2,Sox5-201,43173,Sox5-201;Sox5-214;Sox5-205;Sox5-202;Sox5-209;Sox5-207;Sox5-210;Sox5-212;Sox5-208;Sox5-213,Sox5;Sox5;Sox5;Sox5;Sox5;Sox5;Sox5;Sox5;Sox5;Sox5,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,71,20678,ENSMUSG00000041540,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25038,cg03861766,0.0000202,0.00000625,3.225879849,0.001390011,gain,ns,0.000017,0.0000106,1.597125425,0.111256561,pos,ns,0.006324958,0.003111336,2.032875614,0.042916928,pos,ns,1.367371375,0.00012037,0.000106999,1.124965633,0.261473855,pos,ns,0.692190274,Fgfr2,Fgfr2_Intron,7,131776363,131776412,131776363,131776364,50,-,CGGTTCTGTAAATGTTTGATTAGTTCTGAATGGATTACTGTTAGATTATC,"Intron (Fgfr2-217/Fgfr2, intron 2 of 6)",7,130162451,133123350,2960900,2,Fgfr2-217,1346938,Fgfr2-217,Fgfr2,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,58,79,14183,ENSMUSG00000030849,mapped to different genes,7,131776265,131776364,100,*,100,9,0.52,1.435406699,0.09,0.000000919,CpGisland,TRUE,U15,NS
22122,cg18351805,0.00000107,0.00000935,0.114177905,0.909170679,gain,ns,-0.0000254,0.0000159,-1.59699042,0.111286661,neg,ns,0.004607182,0.004652432,0.990273901,0.322812563,pos,ns,0.491049573,-0.000259837,0.000159997,-1.624013491,0.105389256,neg,ns,0.273479842,Eif4g2,Eif4g2_Exon,7,111080243,111080292,111080291,111080292,50,+,CGGAGTTGTCATCTCGTCTAGTGCTTCGTGCAGGAATCCATTTCTGAGCG,"Exon (Eif4g2-213/Eif4g2, exon 4 of 22)",7,111067750,111083030,15281,2,Eif4g2-213,2738,Eif4g2-213;Eif4g2-206;Eif4g2-204;Eif4g2-211;Eif4g2-210;Eif4g2-209;Eif4g2-203;Eif4g2-201;Eif4g2-212;Eif4g2-205,Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2,0;0;-4858;-4034;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,20,22,13690,ENSMUSG00000005610,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U4,Pr-F
17742,cg05938033,-0.000000919,0.00000293,-0.313583131,0.754048567,loss,ns,0.00000795,0.00000498,1.596877027,0.111311948,pos,ns,0.002185776,0.001459366,1.497757456,0.135213794,pos,ns,0.868979002,-0.0000199,0.0000502,-0.395933514,0.692426438,neg,ns,0.976444192,Ckap5,Ckap5_Exon,2,91599566,91599615,91599614,91599615,50,+,TGGTCTTGTGCCTTCTTTCACTGCTTTTCCGTGGACAGAATTATGTATCG,"Exon (Ckap5-209/Ckap5, exon 6 of 9)",2,91526762,91620664,93903,1,Ckap5-204,72804,Ckap5-204;Ckap5-201;Ckap5-202;Ckap5-203;Ckap5-209;Ckap5-206,Ckap5;Ckap5;Ckap5;Ckap5;Ckap5;Ckap5,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,75786,ENSMUSG00000040549,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13644,cg02347879,-0.0000067,0.0000022,-3.050050159,0.002485526,loss,ns,0.00000596,0.00000373,1.596678642,0.111356199,pos,ns,0.003093119,0.00109374,2.828020841,0.00498857,pos,ns,2.302023931,-0.0000915,0.0000376,-2.431679621,0.015595174,neg,ns,0.944486225,Colgalt1,Colgalt1_Exon,8,71622757,71622806,71622805,71622806,50,+,GAGATCTTCTTCAAGAGACGTCTGATGAACCTCATGCGGGATGTGGAGCG,"Exon (Colgalt1-201/Colgalt1, exon 10 of 12)",8,71610998,71624911,13914,1,Colgalt1-201,11759,Colgalt1-201;Colgalt1-202;Colgalt1-203;Unc13a-201,Colgalt1;Colgalt1;Colgalt1;Unc13a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,234407,ENSMUSG00000034807,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24046,cg08539704,0.00000662,0.00000315,2.10043651,0.036498034,gain,ns,-0.00000854,0.00000535,-1.596655108,0.11136145,neg,ns,-0.001098132,0.001567471,-0.700576135,0.484093051,neg,ns,0.315071152,-0.000043,0.0000539,-0.797361262,0.425851555,neg,ns,0.023045767,Bcar3,Bcar3_Exon,3,122292954,122293003,122292954,122292955,50,+,CGCCGGGACTCGAACCCGGAACCTTTGAATGCCTTCAGCCTCTAGAAGTC,Promoter (1-2kb),3,122294136,122427148,133013,1,Bcar3-202,-1133,Bcar3-202,Bcar3,-1133,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,8,29815,ENSMUSG00000028121,conserved gene and region,3,122292926,122294040,1115,*,1115,150,0.722869955,1.030721351,0.134529148,3.20E-135,CpGisland,TRUE,NA,NRS
18572,cg22094880,-0.0000166,0.0000107,-1.553151455,0.121407241,loss,ns,0.0000291,0.0000182,1.596625698,0.111368011,pos,ns,0.01000896,0.005331882,1.877190743,0.061430905,pos,ns,1.211613083,-0.000552295,0.000183363,-3.012033655,0.0028087,neg,ns,0.758618856,Tfdp2,Tfdp2_Exon,9,96297651,96297700,96297651,96297652,50,-,CGAAGAGTTTATGATGCTTTAAATGTGCTAATGGCAATGAACATAATTTC,"Exon (Tfdp2-202/Tfdp2, exon 5 of 10)",9,96196275,96318878,122604,1,Tfdp2-202,101376,Tfdp2-202;Tfdp2-201;Tfdp2-208;Tfdp2-209;Tfdp2-206;Tfdp2-210;Tfdp2-207;Tfdp2-205;Tfdp2-211;Tfdp2-204;Tfdp2-203,Tfdp2;Tfdp2;Tfdp2;Tfdp2;Tfdp2;Tfdp2;Tfdp2;Tfdp2;Tfdp2;Tfdp2;Tfdp2,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,211586,ENSMUSG00000032411,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18696,cg07220504,0.00000447,0.00000825,0.541854933,0.588307689,gain,ns,0.0000224,0.000014,1.596454996,0.111406102,pos,ns,0.011804448,0.004107643,2.87377681,0.004336153,pos,ns,2.362895384,-0.000175404,0.000141261,-1.241698408,0.215286503,neg,ns,0.378087712,Skap1,Skap1_Intron,11,96743186,96743235,96743186,96743187,50,+,CGAGCAGATTAAACATTTCCGTCACATTGTTTCCAAATTGTGTTGTGGTG,"Intron (Skap1-204/Skap1, intron 11 of 12)",11,96464593,96758941,294349,1,Skap1-204,278593,Skap1-204;Skap1-203;Skap1-201,Skap1;Skap1;Skap1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,40,46,78473,ENSMUSG00000057058,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
11726,cg04616549,0.00000446,0.00000261,1.710993207,0.088082705,gain,ns,0.00000707,0.00000443,1.596346511,0.111430315,pos,ns,0.003135161,0.001297881,2.415599327,0.01628738,pos,ns,1.788148783,-0.0000793,0.0000446,-1.776660904,0.076604669,neg,ns,0.945886995,Fam204a,Fam204a_Intron,19,60242864,60242913,60242864,60242865,50,+,CGGGTCTGAACTATCTCGCAAAGCCTATTCATTTTGAAGAATCACTGAGA,"Intron (Gm28351-201/Gm28351-201, intron 1 of 1)",19,60199435,60226701,27267,2,Fam204a-205,-16163,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,14,76539,ENSMUSG00000057858,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14853,cg12632056,-0.00000422,0.00000156,-2.712731273,0.007045915,loss,ns,0.00000422,0.00000264,1.596260017,0.111449622,pos,ns,0.00150201,0.000774112,1.940300227,0.053249765,pos,ns,1.273682308,-0.0000515,0.0000266,-1.934333514,0.053981934,neg,ns,0.058450835,Phf12,Phf12_Intron,11,77984960,77985009,77985008,77985009,50,-,GCCTCTTAGGAAATCGGGCCGGGTTAGACAATTAAAATTGCCCTTGGGCG,"Intron (Phf12-202/Phf12, intron 2 of 10)",11,77982754,78026214,43461,1,Phf12-202,2206,Phf12-202;Phf12-201,Phf12;Phf12,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,27,268448,ENSMUSG00000037791,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
4027,cg20312269,0.0000645,0.0000147,4.39745294,0.0000151,gain,ns,-0.0000398,0.0000249,-1.596256354,0.11145044,neg,ns,0.004036073,0.007299538,0.552921685,0.580715528,pos,ns,0.236036561,0.000118963,0.000251031,0.473898136,0.635906137,pos,ns,0.366095096,Gm45647,Gm45647_Intergenic_upstream,8,26529843,26529892,26529891,26529892,50,+,TACTTTCTAATGACATCAATTGGCCATAAATATTAGATATCCAAGGTTCG,Distal Intergenic,8,26780315,26780509,195,1,Gm45647-201,-250423,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,46,62,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
263,cg09643313,0.0000612,0.00000494,12.38167513,7.00E-29,gain,yes,-0.0000134,0.0000084,-1.596211947,0.111460354,neg,ns,0.005301189,0.002460575,2.154451516,0.031974968,pos,ns,1.495189875,-0.0000223,0.0000846,-0.263161675,0.792600792,neg,ns,0.051821319,Ppp1r9a,Ppp1r9a_fiveUTR,6,4903892,4903941,4903892,4903893,50,+,CGGCTGCCTCTCAAGTTGGTGTTATTTATGTTTGTCTTTTGTGAGGGCAG,Promoter (<=1kb),6,4902917,5159590,256674,1,Ppp1r9a-205,975,Ppp1r9a-205;Ppp1r9a-204;Ppp1r9a-208;Ppp1r9a-201;Ppp1r9a-206;Ppp1r9a-203;Ppp1r9a-211;Ppp1r9a-210;Ppp1r9a-212;Ppp1r9a-209,Ppp1r9a;Ppp1r9a;Ppp1r9a;Ppp1r9a;Ppp1r9a;Ppp1r9a;Ppp1r9a;Ppp1r9a;Ppp1r9a;Ppp1r9a,0;0;0;0;0;0;0;-1475;-1475;-2466,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,3,243725,ENSMUSG00000032827,conserved gene and region,6,4903794,4903893,100,*,100,10,0.71,0.801282051,0.1,6.26E-08,CpGisland,TRUE,U1,Pr-A
4648,cg02841933,-0.00000441,0.0000017,-2.594092493,0.009934478,loss,ns,0.00000461,0.00000289,1.595824126,0.111546964,pos,ns,0.00143025,0.000846786,1.689032995,0.092218603,pos,ns,1.035181462,-0.0000051,0.0000291,-0.17518847,0.861045913,neg,ns,0.052663369,Nrf1,Nrf1_fiveUTR,6,30048099,30048148,30048099,30048100,50,-,CGCAGCCGCTCTGAGGTGAGTGCCCTACCGCGCAATCTCCAGCTATTTCA,Promoter (<=1kb),6,30047988,30153458,105471,1,Nrf1-211,111,Nrf1-211;Nrf1-212;Nrf1-210;Nrf1-217;Nrf1-207;Nrf1-216;Nrf1-208;Nrf1-209;Nrf1-205;Nrf1-206;Nrf1-218,Nrf1;Nrf1;Nrf1;Nrf1;Nrf1;Nrf1;Nrf1;Nrf1;Nrf1;Nrf1;Nrf1,0;0;0;0;0;0;0;0;0;0;-3,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,5,18181,ENSMUSG00000058440,conserved gene and region,6,30047604,30048984,1381,*,1381,166,0.739319334,0.880936095,0.120202752,4.18E-140,CpGisland,TRUE,U1,Pr-A
23305,cg24090077,0.000017,0.00000556,3.053781195,0.002455725,gain,ns,-0.0000151,0.00000944,-1.595729662,0.111568069,neg,ns,-0.001363832,0.002766601,-0.492962824,0.622387853,neg,ns,0.205938892,-0.0000872,0.0000951,-0.916639249,0.360044245,neg,ns,0.937670954,Eri3,Eri3_Intron,4,117666098,117666147,117666098,117666099,50,-,CGTAAAACACGCTAATTATTTGGAGCGCGCTTATTACGGTGAGAGAAATC,"Intron (Eri3-201/Eri3, intron 8 of 8)",4,117550365,117674297,123933,1,Eri3-201,115733,Eri3-201;Eri3-206;Eri3-203,Eri3;Eri3;Eri3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,82,97,140546,ENSMUSG00000033423,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26046,cg20360144,0.000000586,0.0000144,0.04063106,0.967616178,gain,ns,0.0000391,0.0000245,1.595708639,0.111572766,pos,ns,-0.005703183,0.007179686,-0.794349877,0.427599449,neg,ns,0.368962863,0.000111777,0.000246909,0.4527048,0.651077979,pos,ns,0.640032889,Gm2574,Gm2574_Intergenic_downstream,3,143411848,143411897,143411848,143411849,50,-,CGTTTTGAAAATCATTAATAGTTCAGGGAAATAATGTTAGTGATTAAGTA,Distal Intergenic,3,142962611,142963612,1002,1,Gm2574-201,449286,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,19,100040053,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11040,cg08420849,-0.0000175,0.00000621,-2.823492647,0.005057761,loss,ns,0.0000168,0.0000106,1.595633658,0.11158952,pos,ns,0.006371613,0.003090949,2.061377703,0.040100569,pos,ns,1.396849469,-0.00031115,0.000106297,-2.927165212,0.003673731,neg,ns,0.875727092,Gm28900,Gm28900_Intergenic_upstream,1,56403484,56403533,56403532,56403533,50,+,GCAGAACTCCATCTTATTATGTTTAAAAGTATAAATCTCAAATTTGTACG,Distal Intergenic,1,56451407,56451562,156,1,Gm28900-201,-47874,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,12,102635907,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
427,cg21003308,0.000181354,0.000013,13.89734156,1.83E-34,gain,yes,-0.0000354,0.0000222,-1.595587143,0.111599915,neg,ns,-0.000161943,0.006494888,-0.024933978,0.980123668,neg,ns,0.008719123,0.000540116,0.000223359,2.41815633,0.016175526,pos,ns,0.831366204,Zdhhc14,Zdhhc14_Exon,17,5712467,5712516,5712515,5712516,50,+,ATCTCTGTCTTTTCTGACAGTCTTTATATTTGCATTCGTTATCACCCACG,"Exon (Zdhhc14-201/Zdhhc14, exon 4 of 9)",17,5492557,5753811,261255,1,Zdhhc14-201,219910,Zdhhc14-201,Zdhhc14,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,8,224454,ENSMUSG00000034265,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13556,cg11394742,-0.0000107,0.00000262,-4.097405718,0.0000534,loss,ns,0.0000071,0.00000445,1.595565984,0.111604644,pos,ns,0.000696875,0.00130453,0.534196646,0.593588363,pos,ns,0.226514622,-0.0000217,0.0000449,-0.48380762,0.628863984,neg,ns,0.949038817,Dact1,Dact1_Exon,12,71313854,71313903,71313902,71313903,50,+,GTTTATCCAGTTGTCATTCCAGCACCTGCTTTTGCAGCCCCTTGGAGGCG,"Exon (Dact1-201/Dact1, exon 3 of 4)",12,71309884,71320107,10224,1,Dact1-201,3970,Dact1-201;Dact1-202,Dact1;Dact1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,59036,ENSMUSG00000044548,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3418,cg01052727,0.000119363,0.000013,9.201762854,5.37E-18,gain,yes,-0.0000352,0.000022,-1.595450156,0.111630532,neg,ns,-0.011151429,0.006456153,-1.727256061,0.085117733,neg,ns,1.069979952,0.000963425,0.000222027,4.339233446,0.0000194,pos,ns,0.381720153,A830031A19Rik,A830031A19Rik_Promoter,11,24074109,24074158,24074109,24074110,50,-,CGTCTGGAGGCCACGCGGCTCATACTTCATACCGAAAACTACTGAAAGGA,Promoter (<=1kb),11,24048955,24075054,26100,2,A830031A19Rik-201,896,A830031A19Rik-201;Bcl11a-201;Bcl11a-203;Bcl11a-205;Bcl11a-202,A830031A19Rik;Bcl11a;Bcl11a;Bcl11a;Bcl11a,0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,9,23,268391,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
8040,cg15574290,-0.0000591,0.0000124,-4.781533197,0.00000269,loss,ns,0.0000335,0.000021,1.595411356,0.111639205,pos,ns,-0.006359531,0.006151293,-1.033852859,0.302010798,neg,ns,0.519977529,0.000350485,0.000211542,1.656808463,0.098569911,pos,ns,0.613563158,Pax2,Pax2_Intergenic_upstream,19,44699126,44699175,44699174,44699175,50,+,CATGTTTCTCTCTATTGTGCCATCATAAAAAAAACTCCGCTGGTGACTCG,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-56870,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
1502,cg22029056,0.00000124,0.00000235,0.52781121,0.598007956,gain,ns,-0.00000637,0.00000399,-1.595389163,0.111644166,neg,ns,0.000658426,0.001169664,0.562918667,0.573897151,pos,ns,0.241165931,-0.00000917,0.0000402,-0.227866956,0.819899892,neg,ns,0.94205671,Ddx3x,Ddx3x_threeUTR,X,13291537,13291586,13291585,13291586,50,-,AACCACATGTAACTTAGCCAGACTATACCTTGTGTAGCTTCAAGAACTCG,3' UTR,20,13280970,13294052,13083,1,Ddx3x-201,10567,Ddx3x-201;Ddx3x-205;Ddx3x-204;Ddx3x-202;Ddx3x-203,Ddx3x;Ddx3x;Ddx3x;Ddx3x;Ddx3x,0;0;0;0;3752,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,6,13205,ENSMUSG00000000787,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22623,cg03893949,-0.0000228,0.00000497,-4.597265929,0.00000624,loss,ns,0.0000135,0.00000844,1.595344009,0.111654261,pos,ns,-0.004042607,0.002473497,-1.634368939,0.103196461,neg,ns,0.986335194,0.000178647,0.0000851,2.100166026,0.036521996,pos,ns,0.927528405,Maf,Maf_Intergenic_downstream,8,115462683,115462732,115462731,115462732,50,-,TTACATCTTCCATAAATCATATTTATTGAGTGCCTGGGGTGTACAAGACG,Distal Intergenic,8,115682942,115707096,24155,2,Maf-201,244413,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,23,17132,ENSMUSG00000055435,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8890,cg04561722,-0.0000308,0.00000877,-3.515562044,0.0005043,loss,ns,0.0000238,0.0000149,1.595343498,0.111654375,pos,ns,0.005143256,0.004366759,1.177819948,0.239771795,pos,ns,0.620201905,-0.000354442,0.000150172,-2.360233729,0.018882581,neg,ns,0.636339662,Cyfip2,Cyfip2_Exon,11,46261519,46261568,46261519,46261520,50,-,CGTAGATGGTGTTCCTGATGGCCTGGTTGAAGACGCTCTCCATCCTGCCC,"Exon (Cyfip2-205/Cyfip2, exon 14 of 31)",11,46193850,46312358,118509,2,Cyfip2-205,50790,Cyfip2-205;Cyfip2-201;Cyfip2-202;Cyfip2-204,Cyfip2;Cyfip2;Cyfip2;Cyfip2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,8,76884,ENSMUSG00000020340,conserved gene and region,11,46261461,46261534,74,*,74,8,0.635135135,1.072463768,0.108108108,0.0000012,CpGisland,TRUE,NA,NRS
506,cg12908742,-0.00000137,0.00000348,-0.393473355,0.694240377,loss,ns,0.00000944,0.00000592,1.595318009,0.111660074,pos,ns,0.009416019,0.001733955,5.430372616,0.000000114,pos,ns,6.943992845,-0.000313034,0.0000596,-5.249550494,0.000000284,neg,yes,0.901639799,Celf2,Celf2_Intron,2,6637265,6637314,6637313,6637314,50,-,GAGTCTGTTATGGTGATTAAGTCATCATTTCTGACAGATTACTCTAATCG,"Intron (Celf2-201/Celf2, intron 5 of 15)",2,6539694,7396000,856307,2,Celf2-201,758686,Celf2-201;Celf2-202;Celf2-204;Celf2-214;Celf2-206;Celf2-226;Celf2-223;Celf2-224;Celf2-221;Celf2-205;Celf2-211;Celf2-213;Celf2-225;Celf2-228;Celf2-217;Celf2-227;Celf2-210;Celf2-209;Celf2-219;Celf2-208;Celf2-207,Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,24,14007,ENSMUSG00000002107,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27398,cg01534862,-0.0000298,0.00000665,-4.489792284,0.0000101,loss,ns,0.000018,0.0000113,1.595224075,0.111681077,pos,ns,-0.007994339,0.003308965,-2.415963471,0.016271409,neg,ns,1.788574842,0.0000951,0.000113795,0.83581897,0.403900502,pos,ns,0.793825946,Gpm6b,Gpm6b_Intron,X,166366011,166366060,166366059,166366060,50,+,ACAACTTGGGCAAATCACTTGGCCATTATGAACTCACAGCCATGGCAACG,"Intron (Gpm6b-209/Gpm6b, intron 1 of 6)",20,166238911,166388988,150078,1,Gpm6b-209,127100,Gpm6b-209;Gpm6b-201;Gpm6b-208;Gpm6b-210;Gpm6b-212;Gpm6b-202;Gpm6b-203;Gpm6b-204;Gpm6b-205;Gpm6b-206;Gpm6b-207;Gpm6b-211,Gpm6b;Gpm6b;Gpm6b;Gpm6b;Gpm6b;Gpm6b;Gpm6b;Gpm6b;Gpm6b;Gpm6b;Gpm6b;Gpm6b,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,2,14758,ENSMUSG00000031342,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24786,cg03308445,0.00000863,0.00000216,3.993691656,0.0000813,gain,ns,-0.00000586,0.00000367,-1.595139808,0.111699921,neg,ns,0.0000256,0.001075815,0.023825393,0.981007214,pos,ns,0.008327799,-0.000092,0.000037,-2.486405282,0.01343032,neg,ns,0.010802899,Smarcc2,Smarcc2_Promoter,10,128458463,128458512,128458511,128458512,50,+,CCGTCACGAACAGGATTCGAACCTGTGCGGGGAAACCCCATTGGATTTCG,Promoter (<=1kb),10,128459248,128490482,31235,1,Smarcc2-205,-736,Smarcc2-205;Smarcc2-201;Smarcc2-202;Smarcc2-203;Smarcc2-206,Smarcc2;Smarcc2;Smarcc2;Smarcc2;Smarcc2,0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,6,16,68094,ENSMUSG00000025369,conserved gene and region,10,128458453,128458841,389,*,389,38,0.645244216,0.938658877,0.097686375,9.20E-29,CpGisland,TRUE,U2,Pr-W
17797,cg14222701,0.00000024,0.00000384,0.062683709,0.950058767,gain,ns,-0.0000104,0.00000652,-1.594845704,0.111765709,neg,ns,0.000945687,0.00190949,0.495256528,0.620769916,pos,ns,0.207069338,-0.0000329,0.0000657,-0.500733962,0.616913693,neg,ns,0.908384318,Ambra1,Ambra1_Exon,2,91772513,91772562,91772513,91772514,50,-,CGCCCCAGGACTTCCGCTTACATCAGGCTCCGACAGCGGGTCAGTTACCC,"Exon (Ambra1-206/Ambra1, exon 7 of 8)",2,91730134,91918849,188716,1,Ambra1-203,42379,Ambra1-203;Ambra1-205;Ambra1-206;Ambra1-209;Ambra1-204;Ambra1-202;Ambra1-201;Ambra1-207,Ambra1;Ambra1;Ambra1;Ambra1;Ambra1;Ambra1;Ambra1;Ambra1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,12,228361,ENSMUSG00000040506,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23027,cg19288429,-0.0000245,0.00000506,-4.834981704,0.0000021,loss,ns,0.0000137,0.0000086,1.594842693,0.111766382,pos,ns,0.003365762,0.002518605,1.336359502,0.182411843,pos,ns,0.738946969,-0.000103191,0.0000866,-1.191376131,0.234417298,neg,ns,0.908580668,Mgat5b,Mgat5b_Exon,11,116968457,116968506,116968457,116968458,50,+,CGGCTACCGGACCAACTGGGGCTACTGGAACCTCAACCCCAAGCAGTTCA,"Exon (Mgat5b-201/Mgat5b, exon 10 of 18)",11,116918863,116986948,68086,1,Mgat5b-201,49594,Mgat5b-201;Mgat5b-204;Mgat5b-203;Mgat5b-202,Mgat5b;Mgat5b;Mgat5b;Mgat5b,0;0;0;-4567,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,268510,ENSMUSG00000043857,conserved gene and region,11,116968395,116968465,71,*,71,8,0.61971831,1.175983437,0.112676056,0.000000866,CpGisland,TRUE,NA,NRS
12736,cg19992880,-0.00000509,0.00000959,-0.530196985,0.596354917,loss,ns,0.000026,0.0000163,1.594602131,0.111820217,pos,ns,0.006285893,0.004773484,1.316835414,0.188866428,pos,ns,0.723845234,-0.0000858,0.00016416,-0.522433854,0.601741426,neg,ns,0.650744701,Ppp2r2a,Ppp2r2a_threeUTR,14,67016462,67016511,67016510,67016511,50,-,ATTTTCTTATTGAAGTCTAGGCTGTCAACACTTATTTCATCTTTCTTTCG,3' UTR,14,67014056,67072444,58389,2,Ppp2r2a-201,55933,Ppp2r2a-201;Ppp2r2a-204;Ppp2r2a-203;Ppp2r2a-202,Ppp2r2a;Ppp2r2a;Ppp2r2a;Ppp2r2a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,5,71978,ENSMUSG00000022052,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16483,cg03571234,0.000000374,0.00000355,0.105318271,0.916191378,gain,ns,0.00000962,0.00000603,1.594569117,0.111827606,pos,ns,0.005947102,0.001767886,3.363962874,0.000864798,pos,ns,3.063085364,-0.00018042,0.0000608,-2.967552803,0.003235545,neg,ns,0.923048594,Dmd,Dmd_Exon,X,85149157,85149206,85149157,85149158,50,-,CGATGATACTCATTCACGCATTGAACATTATGCTAGCAGGTATGAGACTA,"Exon (Dmd-203/Dmd, exon 72 of 79)",20,82948903,85206141,2257239,1,Dmd-203,2200254,Dmd-203;Dmd-215;Dmd-210;Dmd-214;Dmd-212;Dmd-202;Dmd-201,Dmd;Dmd;Dmd;Dmd;Dmd;Dmd;Dmd,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,20,28,13405,ENSMUSG00000045103,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26446,cg18944151,0.0000854,0.0000122,6.997799925,1.61E-11,gain,yes,0.000033,0.0000207,1.594362892,0.111873776,pos,ns,0.031896589,0.006070459,5.25439515,0.000000277,pos,ns,6.557881958,-0.000735179,0.000208763,-3.521604951,0.000493379,neg,ns,0.287935835,Foxa2,Foxa2_Exon,2,148044289,148044338,148044289,148044290,50,-,CGCTGCTGGTTCTGCCGGTAGAAGGGGAAGAGGTCCATGATCCACTGGTA,"Exon (Foxa2-202/Foxa2, exon 2 of 2)",2,148042877,148045948,3072,2,Foxa2-202,1610,Foxa2-202;Foxa2-201;Foxa2-204;Foxa2-203,Foxa2;Foxa2;Foxa2;Foxa2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,25,15376,ENSMUSG00000037025,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
7835,cg14945150,0.00000463,0.00000539,0.859288544,0.390845319,gain,ns,-0.0000146,0.00000916,-1.594118418,0.111928527,neg,ns,0.001732752,0.002683861,0.645618935,0.519003753,pos,ns,0.284829502,0.0000472,0.0000923,0.51191829,0.609072677,pos,ns,0.749162749,Bcl9l,Bcl9l_fiveUTR,9,44499488,44499537,44499488,44499489,50,+,CGCACAGGGGCCGTAGCCCCACTGTGTGTGGGAGCCATGAGGATCCTGGC,5' UTR,9,44482825,44510422,27598,1,Bcl9l-206,16663,Bcl9l-206;Bcl9l-202;Bcl9l-203;Bcl9l-205;Bcl9l-201;Bcl9l-204,Bcl9l;Bcl9l;Bcl9l;Bcl9l;Bcl9l;Bcl9l,0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,9,80288,ENSMUSG00000063382,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23120,cg00286320,0.000162552,0.0000142,11.42173262,1.88E-25,gain,yes,-0.0000385,0.0000242,-1.593748014,0.112011522,neg,ns,0.015319549,0.007083342,2.162757312,0.031324163,pos,ns,1.504120529,-0.000270015,0.000243596,-1.108455892,0.268524208,neg,ns,0.278164409,Rnf220,Rnf220_Intron,4,117312675,117312724,117312723,117312724,50,-,GGACTGACAACAATTTTTAGCTGAGAGATTCTTCACCAAAATGCCAGGCG,"Intron (Rnf220-201/Rnf220, intron 2 of 14)",4,117271463,117497052,225590,2,Rnf220-201,184328,Rnf220-201;Rnf220-202;Rnf220-207,Rnf220;Rnf220;Rnf220,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,4,117312723,117312844,122,*,122,9,0.614754098,0.787661406,0.073770492,0.0000048,CpGisland,TRUE,NA,NRS
21720,cg26799881,0.0000102,0.00000513,1.978681202,0.048736723,gain,ns,-0.0000139,0.00000872,-1.593397175,0.112090178,neg,ns,-0.006900738,0.002553216,-2.702762883,0.007255609,neg,ns,2.139326124,0.000239481,0.0000878,2.72742342,0.006746815,pos,ns,0.075428144,Slitrk1,Slitrk1_Exon,14,108913211,108913260,108913211,108913212,50,-,CGTCCCCTGTAACGTTTCCAGCGGCAAAACAAAGAGACGTCTCCAGCAAC,Promoter (<=1kb),14,108908800,108914158,5359,2,Slitrk1-201,898,Slitrk1-201,Slitrk1,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,17,76965,ENSMUSG00000075478,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
338,cg13549145,-0.0000381,0.0000123,-3.087780852,0.002198912,loss,ns,-0.0000334,0.000021,-1.593394112,0.112090865,neg,ns,0.027038394,0.006143159,4.401382627,0.0000148,pos,ns,4.82921378,-0.001896022,0.000211263,-8.974712975,2.79E-17,neg,yes,0.577967063,Arid1b,Arid1b_Intron,17,5212373,5212422,5212373,5212374,50,-,CGCCCAATTATGCTGTGATTATTCTGCTGCACTGTAATTGACTGGGGAGA,"Intron (Arid1b-201/Arid1b, intron 4 of 18)",17,4994939,5343505,348567,1,Arid1b-201,217434,Arid1b-201;Arid1b-207;Arid1b-202;Arid1b-203,Arid1b;Arid1b;Arid1b;Arid1b,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,11,239985,ENSMUSG00000069729,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18277,cg25276324,-0.00000608,0.00000245,-2.484226162,0.013511136,loss,ns,-0.00000663,0.00000416,-1.593372881,0.112095627,neg,ns,-0.000323626,0.001218524,-0.265588229,0.790732886,neg,ns,0.101970199,-0.0000566,0.0000419,-1.350634454,0.177797646,neg,ns,0.902239239,Dyrk1a,Dyrk1a_Exon,16,94673358,94673407,94673358,94673359,50,-,CGCTTTTATCGGTCTCCAGAGGTGCTACTGGGAATGCCTTATGACCTTGC,"Exon (Dyrk1a-202/Dyrk1a, exon 8 of 12)",16,94570010,94695067,125058,1,Dyrk1a-202,103348,Dyrk1a-202;Dyrk1a-203;Dyrk1a-206;Dyrk1a-201;Dyrk1a-204,Dyrk1a;Dyrk1a;Dyrk1a;Dyrk1a;Dyrk1a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,14,13548,ENSMUSG00000022897,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24505,cg10505813,-0.00000175,0.00000067,-2.609508804,0.009507137,loss,ns,0.00000181,0.00000114,1.593270828,0.112118515,pos,ns,0.0000888,0.000333445,0.266193239,0.79026735,pos,ns,0.102225961,-0.00000433,0.0000115,-0.377205791,0.70627877,neg,ns,0.026045473,Gabpb1,Gabpb1_Promoter,2,126675225,126675274,126675225,126675226,50,-,CGCCTTAATGCAATAAACAGGAAATCGCGGGGATGATCTGGGTTCCGGGG,Promoter (<=1kb),2,126627442,126675568,48127,2,Gabpb1-206,294,Gabpb1-206;Gabpb1-205;Gabpb1-204;Gabpb1-201;Gabpb1-203;Gabpb1-202;Gabpb1-208;Gabpb1-207,Gabpb1;Gabpb1;Gabpb1;Gabpb1;Gabpb1;Gabpb1;Gabpb1;Gabpb1,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,4,12,14391,ENSMUSG00000027361,conserved gene but different region,2,126674561,126675949,1389,*,1389,168,0.699064075,0.9905509,0.120950324,2.65E-142,CpGisland,TRUE,U1,Pr-A
10768,cg04610156,-0.00000412,0.00000165,-2.499770215,0.012943981,loss,ns,-0.00000446,0.0000028,-1.592914557,0.11219845,neg,ns,0.000993147,0.000819521,1.211863076,0.226487673,pos,ns,0.644955431,-0.0000319,0.0000282,-1.132253681,0.258402825,neg,ns,0.957212518,Nsd1,Nsd1_Exon,13,55277355,55277404,55277403,55277404,50,+,ACTACCCGCCCAATCACAGCAGGGTTAGAACTAACATTGCATGCAGTCCG,"Exon (Nsd1-202/Nsd1, exon 4 of 5)",13,55209782,55315755,105974,1,Nsd1-207,67573,Nsd1-207;Nsd1-201;Nsd1-202,Nsd1;Nsd1;Nsd1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,7,18193,ENSMUSG00000021488,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25145,cg06702418,0.00000998,0.00000368,2.714581784,0.007007596,gain,ns,-0.00000995,0.00000624,-1.592905614,0.112200457,neg,ns,0.000336519,0.001829294,0.183961353,0.854164047,pos,ns,0.068458713,-0.0000187,0.0000629,-0.297914053,0.765968324,neg,ns,0.922757262,Ahdc1,Ahdc1_threeUTR,4,133077132,133077181,133077132,133077133,50,+,CGCAGAAGCCGAAGGTGAGCCCTTTCTGCACAAAACCAGCAATTGTAAAT,3' UTR,4,133011506,133077863,66358,1,Ahdc1-203,65626,Ahdc1-203;Ahdc1-204;Ahdc1-211;Ahdc1-201;Ahdc1-202,Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,49,230793,ENSMUSG00000037692,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23316,cg01855868,-0.0000149,0.00000629,-2.37296098,0.018255807,loss,ns,-0.000017,0.0000107,-1.592856455,0.112211491,neg,ns,-0.005499799,0.003131586,-1.756234308,0.080035835,neg,ns,1.09671552,0.000164903,0.000107695,1.531207549,0.126737914,pos,ns,0.863232785,Tnrc6c,Tnrc6c_Exon,11,117755440,117755489,117755440,117755441,50,+,CGTAGCTGTTCCCCATAGCTGGTCACGTGCCAAATCTGACAGTGATAAAA,"Exon (Tnrc6c-201/Tnrc6c, exon 17 of 22)",11,117654289,117763437,109149,1,Tnrc6c-201,101151,Tnrc6c-201;Tnrc6c-205;Tnrc6c-202;Tnrc6c-203;Tnrc6c-206,Tnrc6c;Tnrc6c;Tnrc6c;Tnrc6c;Tnrc6c,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,217351,ENSMUSG00000025571,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7988,cg10827642,0.0000729,0.0000161,4.535709606,0.00000822,gain,ns,0.0000435,0.0000273,1.59281125,0.112221637,pos,ns,0.015787925,0.008000804,1.973292347,0.049350215,pos,ns,1.306710954,-0.000409039,0.000275147,-1.486619701,0.138131613,neg,ns,0.137966429,Pax2,Pax2_Intergenic_upstream,19,44674809,44674858,44674809,44674810,50,-,CGACTGCAGACGCAGATGAAATTCTGTGCCGAGCCTGATGCGCGGTAACC,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-81236,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,19,44674652,44674916,265,*,265,31,0.59245283,1.339693412,0.116981132,3.55E-26,CpGisland,TRUE,U13,Hc-P
2291,cg21342449,-0.0000142,0.0000042,-3.390997257,0.0007866,loss,ns,0.0000114,0.00000714,1.592754059,0.112234475,pos,ns,0.001591955,0.00209097,0.761347843,0.447028106,pos,ns,0.349665171,-0.0000962,0.0000719,-1.33806619,0.181855527,neg,ns,0.91385689,Gm28343,Gm28343_Intergenic_upstream,1,18956225,18956274,18956273,18956274,50,+,AAAGTAGTTCAAATCATTTTCATACCAGTCAAAAGATACTGAGGAGGGCG,Distal Intergenic,1,19037266,19037377,112,1,Gm28343-201,-80992,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,3,108167808,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5850,cg15772682,-0.00000928,0.0000113,-0.824033451,0.410554085,loss,ns,0.0000305,0.0000191,1.592701274,0.112246325,pos,ns,0.011000437,0.005607307,1.961803912,0.050679866,pos,ns,1.295164541,-0.000322983,0.000192835,-1.674922573,0.09495784,neg,ns,0.398777469,Kirrel3,Kirrel3_Intron,9,35017704,35017753,35017752,35017753,50,+,CCACCAATAAATTGGCACTGCAGGGCTAAAAATAACAGCATCTGATCGCG,"Intron (Kirrel3-202/Kirrel3, intron 11 of 16)",9,34486126,35035280,549155,1,Kirrel3-202,531578,Kirrel3-202;Kirrel3-206;Kirrel3-209;Kirrel3-201;Kirrel3-208;Kirrel3-205;Kirrel3-207,Kirrel3;Kirrel3;Kirrel3;Kirrel3;Kirrel3;Kirrel3;Kirrel3,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,21,67703,ENSMUSG00000032036,conserved gene and region,9,35017750,35017880,131,*,131,11,0.664122137,0.784858388,0.083969466,6.93E-08,CpGisland,TRUE,U11,Tr-P
26969,cg21657265,0.0000974,0.0000146,6.684078936,1.08E-10,gain,yes,0.0000394,0.0000248,1.592488571,0.112294086,pos,ns,0.032186099,0.007251879,4.438311408,0.0000126,pos,ns,4.899010607,-0.000570839,0.000249392,-2.288928602,0.022755777,neg,ns,0.339256068,Ptchd1,Ptchd1_fiveUTR,X,155623279,155623328,155623327,155623328,50,-,CTCAAGCCCCTGTGCAGAACCTGCCGCAGCATCCTAGAGCAGAGCGGGCG,Promoter (<=1kb),20,155573455,155623325,49871,2,Ptchd1-201,0,Gm15155-202;Gm15155-201;Ptchd1-201;Ptchd1-203;Ptchd1-202,Gm15155;Gm15155;Ptchd1;Ptchd1;Ptchd1,-1413;-1447;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,11,211612,ENSMUSG00000041552,conserved gene and region,X,155623027,155623834,808,*,808,97,0.735148515,0.890798327,0.120049505,4.32E-82,CpGisland,TRUE,U3,Pr-B
5871,cg16921308,0.00000447,0.00000572,0.781027988,0.435382055,gain,ns,-0.0000155,0.00000972,-1.592450981,0.112302528,neg,ns,-0.00754021,0.002846707,-2.648748501,0.008492794,neg,ns,2.070949426,0.000261065,0.0000979,2.666706757,0.008061884,pos,ns,0.85402731,Sox2,Sox2_Intergenic_downstream,3,35088479,35088528,35088527,35088528,50,-,AGGGTCTGATGTGTGGGAATCAAATGAGAGGCCTAGCTCAAATCCGGTCG,Distal Intergenic,3,34650405,34652461,2057,1,Sox2-201,438123,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,62,20674,ENSMUSG00000074637,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11568,cg07475226,-0.000164595,0.00000974,-16.89233367,7.68E-46,loss,yes,-0.0000264,0.0000166,-1.592417626,0.11231002,neg,ns,0.020796062,0.004849582,4.288217466,0.0000241,pos,ns,4.618237064,-0.000935875,0.000166777,-5.611541721,4.45E-08,neg,yes,0.857763899,Fbxo33,Fbxo33_threeUTR,12,59202403,59202452,59202451,59202452,50,-,AAAAGCTAAATGTCTTCACTGAAGCTTTGCATCTCTCTGTAAAAATGACG,3' UTR,12,59200655,59219725,19071,2,Fbxo33-201,17273,Fbxo33-201;Fbxo33-204;Fbxo33-202;Fbxo33-203,Fbxo33;Fbxo33;Fbxo33;Fbxo33,0;0;0;16349,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,7,11,70611,ENSMUSG00000035329,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19355,cg01946200,0.000231929,0.0000157,14.81385189,6.51E-38,gain,yes,-0.0000424,0.0000266,-1.592267362,0.112343774,neg,ns,0.009310604,0.007792278,1.194850004,0.233058974,pos,ns,0.63253417,-0.000333987,0.000267976,-1.246334148,0.21358273,neg,ns,0.155761684,Dnajc22,Dnajc22_Promoter,15,99093722,99093771,99093770,99093771,50,-,GATGAGGGTCCCAGCGGATCGGAAATGTGAAGGGTCAGCGCTGCCGCCCG,Promoter (<=1kb),15,99093170,99100917,7748,1,Dnajc22-202,552,Dnajc22-202,Dnajc22,0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,6,8,72778,ENSMUSG00000038009,conserved gene and region,15,99093593,99093959,367,*,367,36,0.697547684,0.811348563,0.098092643,2.41E-27,CpGisland,TRUE,U3,Pr-B
646,cg06591354,-0.0000104,0.00000692,-1.502419656,0.134006712,loss,ns,-0.0000187,0.0000118,-1.592180517,0.112363285,neg,ns,0.015968627,0.003445933,4.634050792,0.00000529,pos,ns,5.276704427,-0.00040232,0.000118505,-3.39495138,0.000775731,neg,ns,0.854550286,Rtn3,Rtn3_Exon,19,7435085,7435134,7435133,7435134,50,-,TGCCAAAGACAAACCCAGTCTTCTTCACATCTCTCCAGAAAATCAGATCG,"Exon (Rtn3-203/Rtn3, exon 2 of 7)",19,7425901,7483202,57302,2,Rtn3-203,48068,Rtn3-203;Rtn3-202;Rtn3-204;Rtn3-201;Rtn3-205,Rtn3;Rtn3;Rtn3;Rtn3;Rtn3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,20168,ENSMUSG00000024758,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15731,cg10008629,0.0000096,0.00000339,2.834293627,0.004894142,gain,ns,-0.00000916,0.00000576,-1.592117214,0.11237751,neg,ns,0.0000964,0.0016861,0.05716315,0.954452059,pos,ns,0.020245881,0.000127235,0.000058,2.194281708,0.028956917,pos,ns,0.033192146,Chst11,Chst11_Exon,10,82985945,82985994,82985993,82985994,50,+,CCTGGTCATCTTCTATTTCCAAAGTATGTTGCACCCAGGTAGGGGGCGCG,Promoter (<=1kb),10,82985498,83195900,210403,1,Chst11-201,447,Chst11-201,Chst11,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,6,58250,ENSMUSG00000034612,conserved gene but different region,10,82985991,82986137,147,*,147,11,0.56462585,0.93902439,0.074829932,0.000000227,CpGisland,TRUE,NA,NRS
17696,cg22662060,0.00000708,0.00000133,5.306968827,0.000000213,gain,yes,-0.00000361,0.00000226,-1.591995027,0.112404969,neg,ns,0.0000376,0.000663534,0.056643169,0.954865937,pos,ns,0.020057599,-0.0000106,0.0000228,-0.462997662,0.643690896,neg,ns,0.016745223,Zic4,Zic4_threeUTR,9,91387088,91387137,91387136,91387137,50,-,GTTTGACGGTGCATCAGCATGCCGCGTTAGGCTCGCCATGGAAATACGCG,3' UTR,9,91368970,91387793,18824,1,Zic4-204,18118,Zic4-204;Zic4-209;Zic4-205;Zic4-201;Zic4-202,Zic4;Zic4;Zic4;Zic4;Zic4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,threeUTR,18,55,22774,ENSMUSG00000036972,conserved gene and region,9,91387047,91387219,173,*,173,16,0.549132948,1.250225836,0.092485549,5.72E-12,CpGisland,TRUE,U13,Hc-P
10971,cg02444070,-0.0000183,0.00000305,-5.983008548,6.04E-09,loss,yes,0.00000826,0.00000519,1.591908082,0.112424512,pos,ns,0.002065728,0.001519727,1.359275354,0.175047331,pos,ns,0.756844506,-0.0000435,0.0000523,-0.832170601,0.405953246,neg,ns,0.927593268,Tcf7l2,Tcf7l2_threeUTR,19,55931469,55931518,55931517,55931518,50,+,AAGGCAGCTGCCTCAGCCCACCCTCTTCAGATGGAAGCTTACTAGATTCG,3' UTR,19,55741820,55933229,191410,1,Tcf7l2-213,189649,Tcf7l2-213;Tcf7l2-201;Tcf7l2-211;Tcf7l2-212;Tcf7l2-222;Tcf7l2-215;Tcf7l2-202;Tcf7l2-209;Tcf7l2-210;Tcf7l2-203,Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,7,88,21416,ENSMUSG00000024985,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20701,cg04397146,-0.0000161,0.00000574,-2.814511452,0.00519758,loss,ns,-0.0000155,0.00000975,-1.591842335,0.112439292,neg,ns,-0.008869618,0.002855603,-3.10604033,0.002071429,neg,ns,2.683729927,0.000226011,0.0000982,2.301442625,0.022029595,pos,ns,0.865049962,Dab1,Dab1_Intron,4,104490216,104490265,104490216,104490217,50,-,CGGGAAGGAGAATTATCTCCAACAATGAAAAATGTTCTTATTATGTGATC,"Intron (Dab1-202/Dab1, intron 4 of 9)",4,103619665,104680382,1060718,1,Dab1-202,870551,Dab1-202;Dab1-206;Dab1-207;Dab1-203,Dab1;Dab1;Dab1;Dab1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,13,13131,ENSMUSG00000028519,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2693,cg25470635,-0.00000197,0.00000201,-0.977739835,0.328965396,loss,ns,-0.00000544,0.00000342,-1.591675111,0.112476891,neg,ns,-0.00157767,0.001000655,-1.576636732,0.115899034,neg,ns,0.935920182,0.0000246,0.0000344,0.714610146,0.475387743,pos,ns,0.948581302,Ilf3,Ilf3_threeUTR,9,21395416,21395465,21395464,21395465,50,-,CTATTGGGCATCTAGACAGACAGCAACGGGAAGATATCACACAGAGTGCG,3' UTR,9,21367871,21405360,37490,1,Ilf3-201,27545,Ilf3-201;Ilf3-203;Ilf3-206;Ilf3-213;Ilf3-210;Ilf3-202;Ilf3-204;Ilf3-208;Ilf3-209;Ilf3-216;Ilf3-211;Ilf3-214;Ilf3-212,Ilf3;Ilf3;Ilf3;Ilf3;Ilf3;Ilf3;Ilf3;Ilf3;Ilf3;Ilf3;Ilf3;Ilf3;Ilf3,0;0;0;0;27413;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,threeUTR,5,11,16201,ENSMUSG00000032178,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7964,cg03932441,0.000017,0.00000224,7.579553386,4.05E-13,gain,yes,-0.00000606,0.00000381,-1.591599063,0.112493992,neg,ns,0.001680971,0.001116266,1.505887731,0.133114244,pos,ns,0.87577547,0.00000887,0.0000384,0.231025284,0.81744756,pos,ns,0.066960527,Pax2,Pax2_Intergenic_upstream,19,44671102,44671151,44671150,44671151,50,-,ATTAGTCTCCTCACCCCATCAAAAAACTTCTATTAGTAATGGAGACCTCG,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-84943,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,19,44671150,44671210,61,*,61,7,0.62295082,1.196078431,0.114754098,0.00000522,CpGisland,TRUE,U13,Hc-P
17560,cg14735542,-0.0000281,0.0000101,-2.784108788,0.005697321,loss,ns,0.0000273,0.0000171,1.591541507,0.112506937,pos,ns,0.001993585,0.005020141,0.397117317,0.691554219,pos,ns,0.160173765,-0.000474591,0.000172642,-2.748983197,0.006328641,neg,ns,0.579151011,Nrxn1,Nrxn1_Exon,17,90992121,90992170,90992121,90992122,50,+,CGCCCATCATCAGGTGCGCCAGACCTTGAAGGGAAACAAGAGCACAGTCA,"Exon (Nrxn1-202/Nrxn1, exon 3 of 21)",17,90033631,91088907,1055277,2,Nrxn1-202,96737,Nrxn1-202;Nrxn1-207;Nrxn1-216;Nrxn1-209;Nrxn1-201;Nrxn1-206;Nrxn1-208;Nrxn1-210;Nrxn1-205;Nrxn1-203,Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,22,27,18189,ENSMUSG00000024109,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4773,cg17708456,0.0000293,0.00000563,5.199231534,0.000000364,gain,yes,-0.0000152,0.00000957,-1.591538586,0.112507594,neg,ns,0.002257202,0.00280449,0.804852753,0.421521498,pos,ns,0.375180271,-0.0000879,0.0000964,-0.911721647,0.362623695,neg,ns,0.057116104,Mecom,Mecom_fiveUTR,3,30509774,30509823,30509822,30509823,50,-,TTTGGAGCGATTTATCACTTTGATTTGGAGATCTTGTCAGATGGCAATCG,Promoter (<=1kb),3,29965456,30509822,544367,2,Mecom-207,0,Mecom-212;Mecom-213;Mecom-207;Mecom-208;Mecom-211;Mecom-209,Mecom;Mecom;Mecom;Mecom;Mecom;Mecom,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,13,80,14013,ENSMUSG00000027684,conserved gene and region,3,30509822,30509917,96,*,96,11,0.739583333,1.005714286,0.114583333,2.34E-09,CpGisland,TRUE,U3,Pr-B
5470,cg12256228,-0.00000853,0.00000292,-2.919697521,0.003760459,loss,ns,0.0000079,0.00000496,1.591377146,0.11254391,pos,ns,-0.000398901,0.001454527,-0.274247894,0.784076782,neg,ns,0.105641406,-0.00000888,0.00005,-0.177535595,0.859203655,neg,ns,0.048474326,Ring1,Ring1_Exon,17,34024304,34024353,34024352,34024353,50,-,CAGCTCATACAGACTCAGTTCCCACGTTTTGCTGGCATTCTGGGCATTCG,Promoter (<=1kb),17,34020792,34024680,3889,2,Ring1-201,327,H2-Ke6-205;H2-Ke6-211;H2-Ke6-212;H2-Ke6-201;H2-Ke6-203;H2-Ke6-204;H2-Ke6-207;H2-Ke6-209;H2-Ke6-208;H2-Ke6-202;H2-Ke6-206;H2-Ke6-210;Ring1-201;Ring1-203;Ring1-202;Slc39a7-201;Slc39a7-204;Slc39a7-203,H2-Ke6;H2-Ke6;H2-Ke6;H2-Ke6;H2-Ke6;H2-Ke6;H2-Ke6;H2-Ke6;H2-Ke6;H2-Ke6;H2-Ke6;H2-Ke6;Ring1;Ring1;Ring1;Slc39a7;Slc39a7;Slc39a7,2405;3689;3701;3703;3693;3158;2599;3374;3510;3707;3685;3693;0;-372;0;7267;7295;7309,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,19763,ENSMUSG00000024325,conserved gene and region,17,34024292,34025378,1087,*,1087,114,0.708371665,0.836289278,0.104875805,7.22E-89,CpGisland,TRUE,U1,Pr-A
25170,cg00570985,-0.0000288,0.00000692,-4.160153318,0.0000412,loss,ns,-0.0000187,0.0000118,-1.591321375,0.112556457,neg,ns,0.005748271,0.003442664,1.669716116,0.095984958,pos,ns,1.01779682,-0.000141475,0.000118393,-1.194959827,0.233016123,neg,ns,0.710347973,Plekha6,Plekha6_Exon,1,133294605,133294654,133294605,133294606,50,-,CGTGCCCCAGGACTCAGAGAGCCAGCTGCAGGAGCAGGAGAAGCGGATTG,"Exon (Plekha6-204/Plekha6, exon 21 of 23)",1,133181321,133301219,119899,1,Plekha6-204,113284,Plekha6-204;Plekha6-202;Plekha6-201;Plekha6-203;Plekha6-207;Plekha6-210;Plekha6-208,Plekha6;Plekha6;Plekha6;Plekha6;Plekha6;Plekha6;Plekha6,0;0;0;0;0;2855;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,7,240753,ENSMUSG00000041757,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6213,cg00236396,-0.0000495,0.0000101,-4.906194804,0.0000015,loss,yes,0.0000273,0.0000171,1.590582224,0.11272286,pos,ns,-0.009597552,0.00502024,-1.911771657,0.056827228,neg,ns,1.245443525,0.000203604,0.000172646,1.179318091,0.239175827,pos,ns,0.823951323,Tenm2,Tenm2_Intron,11,36337311,36337360,36337311,36337312,50,-,CGAGAAAAGGATAAAAAGAGCGTCTGCATAAATAAATATGCTTTGTAACA,"Intron (Tenm2-202/Tenm2, intron 5 of 30)",11,36006656,37235882,1229227,2,Tenm2-202,898522,Tenm2-202;Tenm2-208;Tenm2-201;Tenm2-204;Tenm2-205;Tenm2-206,Tenm2;Tenm2;Tenm2;Tenm2;Tenm2;Tenm2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,47,84,23964,ENSMUSG00000049336,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6812,cg22323057,-0.00000508,0.00000235,-2.160916047,0.031467443,loss,ns,-0.00000635,0.00000399,-1.590409696,0.112761729,neg,ns,0.0000504,0.001169065,0.043105674,0.965645047,pos,ns,0.015182483,-0.0000659,0.0000402,-1.638222573,0.10238981,neg,ns,0.959476973,Tmem39a,Tmem39a_Exon,16,38585626,38585675,38585674,38585675,50,-,GGTGGAGTTCGGCTGCATCTGGAGTGCACTAATACCGCTCCTGGTTGGCG,"Exon (Tmem39a-203/Tmem39a, exon 2 of 3)",16,38558698,38591190,32493,1,Tmem39a-204,26928,Tmem39a-204;Tmem39a-201;Tmem39a-214;Tmem39a-205;Tmem39a-202;Tmem39a-210;Tmem39a-209;Tmem39a-211;Tmem39a-203;Tmem39a-213;Tmem39a-207;Tmem39a-212;Tmem39a-206,Tmem39a;Tmem39a;Tmem39a;Tmem39a;Tmem39a;Tmem39a;Tmem39a;Tmem39a;Tmem39a;Tmem39a;Tmem39a;Tmem39a;Tmem39a,0;0;0;0;21437;0;0;0;0;0;0;-1536;-2364,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,Exon,4,4,67846,ENSMUSG00000002845,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21659,cg00874874,-0.0000332,0.0000149,-2.231036621,0.026393726,loss,ns,-0.0000402,0.0000253,-1.59036235,0.112772398,neg,ns,-0.009972309,0.007400214,-1.347570253,0.178780676,neg,ns,0.747679424,-0.0000739,0.000254493,-0.29046878,0.771651849,neg,ns,0.547674439,Zfhx3,Zfhx3_Exon,8,108792846,108792895,108792894,108792895,50,+,TAGCCTCATCCTTCGGGAAATGGTTTGAGGGCCCAGACCAGGCTTTCCCG,"Exon (Zfhx3-204/Zfhx3, exon 8 of 16)",8,107942644,108961630,1018987,1,Zfhx3-204,850202,Zfhx3-204;Zfhx3-202;Zfhx3-201,Zfhx3;Zfhx3;Zfhx3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,46,177,11906,ENSMUSG00000038872,conserved gene and region,8,108792801,108793013,213,*,213,13,0.563380282,0.791142857,0.061032864,0.000000139,CpGisland,TRUE,U10,Tr-S
21056,cg13220115,0.0000056,0.00000425,1.315529786,0.189304024,gain,ns,-0.0000115,0.00000723,-1.590156653,0.112818757,neg,ns,0.001803002,0.002117255,0.85157518,0.395107267,pos,ns,0.403284983,0.0000228,0.0000728,0.313259679,0.754294039,pos,ns,0.873486409,Strada,Strada_threeUTR,11,106184560,106184609,106184608,106184609,50,+,ACCTCCAAATAGTTCCAAATCTCTTAAGCCCTCAACAATGAACTTTTCCG,3' UTR,11,106163330,106202168,38839,2,Strada-204,17559,Strada-204;Strada-201;Strada-202;Strada-205;Strada-203,Strada;Strada;Strada;Strada;Strada,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,2,72149,ENSMUSG00000069631,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17162,cg08403433,-0.0000177,0.00000507,-3.503858299,0.000526098,loss,ns,-0.0000137,0.0000086,-1.590017141,0.112850207,neg,ns,-0.001477915,0.002520961,-0.586250645,0.558133705,neg,ns,0.25326175,0.0000642,0.0000867,0.74042757,0.459601014,pos,ns,0.931971104,Sall1,Sall1_Intergenic_downstream,8,88925283,88925332,88925331,88925332,50,+,TAACGGTGGGTCAGAGACAGTTCCCCATCTTCCAGCTTATTTATTCAGCG,Distal Intergenic,8,89027235,89044162,16928,2,Sall1-201,118830,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,15,58198,ENSMUSG00000031665,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24687,cg14104121,0.0000405,0.00000419,9.677078554,1.58E-19,gain,yes,-0.0000113,0.00000711,-1.589992236,0.112855823,neg,ns,0.002699973,0.002083543,1.295856465,0.195988936,pos,ns,0.707768444,-0.0000693,0.0000717,-0.96693086,0.334332334,neg,ns,0.083592008,Neurog2,Neurog2_Promoter,3,127625960,127626009,127625960,127625961,50,+,CGGAATAAAGCCTTCAGATTTGGGATCATTGCCTCCAGACAACAGCTTCA,Promoter (7-8kb),3,127633135,127635631,2497,1,Neurog2-201,-7126,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,13,14,11924,ENSMUSG00000027967,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
12860,cg22502225,0.00000513,0.00000256,2.003960242,0.045944062,gain,ns,-0.00000691,0.00000435,-1.589857821,0.112886133,neg,ns,0.004045073,0.001273722,3.175788295,0.001644646,pos,ns,2.783927621,-0.0000989,0.0000438,-2.258581169,0.024604211,neg,ns,0.947598646,Ebf2,Ebf2_Intron,14,67403104,67403153,67403104,67403105,50,-,CGAATGACTCCCAGTGGAGGATTAAGACATTCTATGTATAGCAAAGACGA,"Intron (Ebf2-201/Ebf2, intron 11 of 16)",14,67233292,67429777,196486,1,Ebf2-201,169812,Ebf2-201;Ebf2-203;Ebf2-202,Ebf2;Ebf2;Ebf2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,21,13592,ENSMUSG00000022053,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17273,cg17553177,0.0000345,0.000006,5.74477417,0.000000022,gain,yes,-0.0000162,0.0000102,-1.589614836,0.11294094,neg,ns,-0.003701199,0.002985476,-1.239735324,0.216010954,neg,ns,0.665524226,0.0000764,0.00010267,0.743763608,0.457582846,pos,ns,0.527968903,Ankfn1,Ankfn1_Intergenic_downstream,11,89382491,89382540,89382491,89382492,50,+,CGTATTGTCTGGCCCCTGGCAGGCTGGTCTGTGGAGGGGACACTCTAAGA,Distal Intergenic,11,89390223,89418948,28726,2,Ankfn1-201,36408,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,15,382543,ENSMUSG00000047773,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19808,cg15160939,-0.00000593,0.00000144,-4.128983656,0.0000469,loss,ns,0.00000388,0.00000244,1.589605963,0.112942942,pos,ns,0.001449293,0.000714367,2.028779161,0.043335203,pos,ns,1.363159165,-0.0000541,0.0000246,-2.200844034,0.028484079,neg,ns,0.96002105,Fchsd2,Fchsd2_Exon,7,101186398,101186447,101186446,101186447,50,+,CCCGTTTGGAAATCTTTTCTCGAGGGAACAATGCAGGTAGCCCAGTCTCG,"Exon (Fchsd2-209/Fchsd2, exon 5 of 7)",7,101092863,101196903,104041,1,Fchsd2-209,93535,Fchsd2-209;Fchsd2-201;Fchsd2-202;Fchsd2-204;Fchsd2-206;Fchsd2-205;Fchsd2-208,Fchsd2;Fchsd2;Fchsd2;Fchsd2;Fchsd2;Fchsd2;Fchsd2,0;0;0;0;0;0;-3796,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,207278,ENSMUSG00000030691,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18056,cg23279931,-0.00000398,0.00000231,-1.725008033,0.085522688,loss,ns,0.00000623,0.00000392,1.589344573,0.113001926,pos,ns,0.000840525,0.001148892,0.731596294,0.464967679,pos,ns,0.332577235,-0.0000433,0.0000395,-1.095906956,0.273970141,neg,ns,0.942900107,Pola1,Pola1_Intron,X,93429320,93429369,93429320,93429321,50,+,CGCAAATGGGTAAATTTGACAAAAAAGCCACCATTAAGACTACATGAAAG,"Intron (Pola1-201/Pola1, intron 34 of 36)",20,93304767,93632155,327389,2,Pola1-201,202786,Pola1-201,Pola1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,59,62,18968,ENSMUSG00000006678,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2030,cg04184175,-0.000106568,0.000015,-7.091778076,9.01E-12,loss,yes,0.0000406,0.0000255,1.589288155,0.11301466,pos,ns,0.031471484,0.007479079,4.207935984,0.0000338,pos,ns,4.471240656,-0.001001199,0.000257205,-3.892613704,0.000121451,neg,ns,0.295279299,Gm12015,Gm12015_Intergenic_upstream,11,17460399,17460448,17460447,17460448,50,-,TGTATCAAAAGCCCTTATATGTGAAAGTTTGTTTTCATATCTGGCCAGCG,Distal Intergenic,11,17297577,17298419,843,2,Gm12015-201,-162029,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,6,382486,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1965,cg09622321,-0.0000236,0.00000597,-3.947606528,0.0000977,loss,ns,-0.0000161,0.0000101,-1.589218959,0.11303028,neg,ns,-0.009397414,0.002971987,-3.161996933,0.001721969,neg,ns,2.763974648,0.000129911,0.000102206,1.27106966,0.2046568,pos,ns,0.884761078,Tfec,Tfec_Intergenic_downstream,6,16677229,16677278,16677277,16677278,50,+,ATTTATGAATTAATCAGGTGCACAAGCACCTCTTAGGAGCCTTCACACCG,Distal Intergenic,6,16834692,16835263,572,2,Tfec-204,157985,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,19,23,21426,ENSMUSG00000029553,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27554,cg03637425,-2.38E-08,0.000000424,-0.055969701,0.955402,loss,ns,0.00000115,0.000000721,1.589122567,0.113052041,pos,ns,-0.000167785,0.00021126,-0.794209364,0.427681109,neg,ns,0.368879933,0.00000927,0.00000727,1.275961638,0.202924269,pos,ns,0.98803991,Tshz2,Tshz2_Exon,2,169886474,169886523,169886474,169886475,50,-,CGGACATTTGTGAGCAAACATGCGGTAAAACTCCACCTAAGCAAAACGCA,"Exon (Tshz2-202/Tshz2, exon 2 of 3)",2,169633013,169913093,280081,1,Tshz2-202,253461,Tshz2-202;Tshz2-201;Tshz2-203;Tshz2-205;Tshz2-204,Tshz2;Tshz2;Tshz2;Tshz2;Tshz2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,30,228911,ENSMUSG00000047907,conserved gene and region,2,169886345,169886564,220,*,220,12,0.518181818,0.81255771,0.054545455,0.00000158,CpGisland,TRUE,U15,NS
14476,cg23503238,0.0000128,0.00000709,1.801728754,0.072559564,gain,ns,0.0000191,0.000012,1.589019431,0.113075329,pos,ns,-0.001948207,0.003528681,-0.552106319,0.58127332,neg,ns,0.23561961,0.000195933,0.000121351,1.614594982,0.107415764,pos,ns,0.896065733,Zbtb7c,Zbtb7c_Intron,18,75835728,75835777,75835728,75835729,50,+,CGTGCATTTGCATATTATGGGTTCATAATTTCAAATAGCTGTAAAGATCT,"Intron (Zbtb7c-201/Zbtb7c, intron 1 of 4)",18,75820178,76148564,328387,1,Zbtb7c-201,15550,Zbtb7c-201;Zbtb7c-203,Zbtb7c;Zbtb7c,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,4,207259,ENSMUSG00000044646,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20955,cg23270711,0.0000019,0.00000333,0.568942049,0.569807426,gain,ns,-0.00000899,0.00000566,-1.589010681,0.113077305,neg,ns,0.006076993,0.001657761,3.66578357,0.000290025,pos,ns,3.53756415,-0.0000611,0.000057,-1.071261317,0.284885253,neg,ns,0.91027035,Papola,Papola_threeUTR,12,105836807,105836856,105836855,105836856,50,+,GCAAATCCTATTCCTGTTATCAAGAATTCAATAAAACTGAGATTGAATCG,3' UTR,12,105784694,105838807,54114,1,Papola-202,52113,Papola-202;Papola-212;Papola-201;Papola-203;Papola-208;Papola-214;Papola-215;Papola-209;Papola-220,Papola;Papola;Papola;Papola;Papola;Papola;Papola;Papola;Papola,0;0;0;0;0;0;0;0;7740,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,8,18789,ENSMUSG00000021111,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2123,cg01099625,-0.00000644,0.00000431,-1.493218628,0.136397026,loss,ns,0.0000116,0.00000733,1.588825989,0.113119019,pos,ns,0.00192429,0.002146434,0.896505576,0.370678455,pos,ns,0.431002656,-0.000146291,0.0000738,-1.981835576,0.04838061,neg,ns,0.877053854,Gm18532,Gm18532_Intergenic_downstream,15,18054102,18054151,18054102,18054103,50,+,CGAAGAAGGATAAAAATGAAGGTCTTTACTGATAGAAGCATGTGCAGTTT,Distal Intergenic,15,18007430,18007845,416,1,Gm18532-201,46672,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,100417322,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10320,cg24511235,-0.000000449,0.00000312,-0.14400382,0.885591021,loss,ns,0.00000842,0.0000053,1.588699247,0.113147651,pos,ns,0.004016001,0.001552026,2.587585847,0.010119945,pos,ns,1.994821868,-0.000152344,0.0000534,-2.854270758,0.004604141,neg,ns,0.926047093,Akap6,Akap6_Intron,12,52976288,52976337,52976288,52976289,50,+,CGTTAGTGGAATAAATCCATTTAATTATCAGTTAATGAAATACAAGGTCA,"Intron (Akap6-201/Akap6, intron 7 of 13)",12,52699383,53155599,456217,1,Akap6-201,276905,Akap6-201;Akap6-202,Akap6;Akap6,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,13,238161,ENSMUSG00000061603,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1133,cg22661206,-0.000013,0.00000384,-3.38130985,0.00081383,loss,ns,0.0000104,0.00000653,1.588661392,0.113156204,pos,ns,-0.000321714,0.001911932,-0.16826642,0.866483417,neg,ns,0.062239744,-0.000000462,0.0000658,-0.007028592,0.994396562,neg,ns,0.93024944,Ikzf1,Ikzf1_Intron,11,11753546,11753595,11753546,11753547,50,-,CGCTGAAATGAACTTGTGATCCTGAAATGCATTTTTAATGAGTTTCCTTT,"Intron (Ikzf1-205/Ikzf1, intron 3 of 3)",11,11685003,11754083,69081,1,Ikzf1-205,68543,Ikzf1-205;Ikzf1-203;Ikzf1-204;Ikzf1-202;Ikzf1-201,Ikzf1;Ikzf1;Ikzf1;Ikzf1;Ikzf1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,15,22778,ENSMUSG00000018654,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14462,cg12474732,0.000026,0.0000076,3.419635778,0.000710988,gain,ns,0.0000205,0.0000129,1.588576043,0.113175489,pos,ns,0.003395521,0.003781361,0.897962793,0.369902266,pos,ns,0.431913009,-0.0000331,0.000130041,-0.254885966,0.798980185,neg,ns,0.694676803,Zc3h3,Zc3h3_Intron,15,75789090,75789139,75789090,75789091,50,-,CGCTGGAAAATAGGAAAGGTATTAAGCGTGGATAATGAAGGCCAGGGAGG,"Intron (Zc3h3-201/Zc3h3, intron 4 of 11)",15,75754430,75841915,87486,2,Zc3h3-201,52776,Zc3h3-201;Zc3h3-203;Zc3h3-202,Zc3h3;Zc3h3;Zc3h3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,18,223642,ENSMUSG00000075600,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1447,cg08949408,0.000488942,0.0000312,15.64942979,4.36E-41,gain,yes,0.0000843,0.0000531,1.588194842,0.113261657,pos,ns,-0.011416833,0.015550185,-0.734192764,0.46338621,neg,ns,0.334056895,0.002292134,0.00053477,4.286209306,0.0000243,pos,ns,0.575825853,C1ql3,C1ql3_Exon,2,13010253,13010302,13010253,13010254,50,-,CGCTCACCTGGTTGTTTTTGCAGAGATCAGCCCACATGCTGGTGCCGTCC,"Exon (C1ql3-201/C1ql3, exon 1 of 2)",2,13003457,13011806,8350,2,C1ql3-201,1504,C1ql3-201,C1ql3,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,9,227580,ENSMUSG00000049630,conserved gene but different region,2,13010085,13010254,170,*,170,13,0.688235294,0.757887517,0.076470588,9.43E-09,CpGisland,TRUE,U3,Pr-B
8327,cg03704990,-0.0000891,0.0000151,-5.880264097,1.06E-08,loss,yes,-0.0000409,0.0000257,-1.588181129,0.113264758,neg,ns,-0.021880298,0.007540136,-2.901844052,0.003975436,neg,ns,2.400615216,0.000768425,0.000259305,2.963407754,0.003278205,pos,ns,0.658182217,Zeb2,Zeb2_Intron,2,45024051,45024100,45024051,45024052,50,-,CGGGGCATTAGCTCAGCTAGAGAAACACACCAGCCGTTACGCACACACAG,"Intron (Zeb2-212/Zeb2, intron 3 of 10)",2,44983632,45117395,133764,2,Zeb2-212,93295,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-227;Zeb2-216;Zeb2-229;Zeb2-218;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17149,cg01851957,-0.0000087,0.00000499,-1.744991593,0.081977249,loss,ns,0.0000134,0.00000847,1.587962849,0.113314123,pos,ns,0.00121948,0.002481251,0.491478055,0.623436161,pos,ns,0.205208011,-0.000067,0.0000853,-0.785704937,0.432640485,neg,ns,0.925217456,Rps6-ps2,Rps6-ps2_Intergenic_upstream,8,88793857,88793906,88793905,88793906,50,-,CTGGTATTAATGAGATTGCTCTATAATTGAACCTTTTCACGGGTCCCTCG,Distal Intergenic,8,88806391,88807137,747,1,Rps6-ps2-201,-12534,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,14,675985,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12001,cg13678703,0.00000562,0.00000417,1.347088522,0.17893559,gain,ns,-0.0000113,0.00000709,-1.587440308,0.113432367,neg,ns,-0.005444235,0.002077318,-2.620800021,0.009204674,neg,ns,2.03599158,0.0000408,0.0000714,0.571566787,0.568029675,pos,ns,0.872307758,Slc4a10,Slc4a10_Exon,2,62265006,62265055,62265054,62265055,50,+,GTTCACTTTTCCTTACTGCTTCCTAAATCCTCCCAGGTCACCAATATCCG,"Exon (Slc4a10-206/Slc4a10, exon 12 of 27)",2,62046462,62326730,280269,1,Slc4a10-202,218544,Slc4a10-202;Slc4a10-206;Slc4a10-201;Slc4a10-203;Slc4a10-204,Slc4a10;Slc4a10;Slc4a10;Slc4a10;Slc4a10,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,12,94229,ENSMUSG00000026904,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6042,cg27505398,-0.000000318,0.000000412,-0.773743479,0.439672144,loss,ns,-0.00000111,0.000000699,-1.587310983,0.113461647,neg,ns,0.000146238,0.000204813,0.714007324,0.475759891,pos,ns,0.322612174,-0.00000845,0.00000704,-1.199445673,0.231270647,neg,ns,0.010934789,Cxxc5,Cxxc5_Intron,18,35889789,35889838,35889789,35889790,50,-,CGTCTGGCATCCGGAGTCTCCCGGGATCGAAAATAATTTGGGCAAAGCGG,"Intron (Gm36315-201/Gm36315-201, intron 1 of 1)",18,35854738,35858619,3882,1,Cxxc5-205,35100,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,49,67393,ENSMUSG00000046668,conserved gene and region,18,35889630,35890054,425,*,425,43,0.656470588,0.954108802,0.101176471,3.55E-33,CpGisland,TRUE,U3,Pr-B
12774,cg11481170,-0.0000299,0.0000103,-2.914768977,0.003818718,loss,ns,0.0000277,0.0000174,1.587140892,0.113500166,pos,ns,0.009533465,0.005109318,1.865897843,0.062999928,pos,ns,1.200659946,-0.000230374,0.000175709,-1.31111309,0.1907899,neg,ns,0.811009519,Phox2b,Phox2b_Intergenic_upstream,5,67139410,67139459,67139410,67139411,50,+,CGAACTGCTGTGCTTAGAATCAATTACTAAATTACTTTGAGCTCTAAGTT,Distal Intergenic,5,67094399,67099301,4903,2,Phox2b-201,-40109,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,28,18935,ENSMUSG00000012520,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19873,cg27434365,-0.0000112,0.0000066,-1.704386741,0.089310827,loss,ns,-0.0000178,0.0000112,-1.587135927,0.11350129,neg,ns,-0.00621733,0.003285153,-1.892554045,0.059348672,neg,ns,1.226588994,0.0000301,0.000112976,0.266467693,0.790056191,pos,ns,0.858808904,Zmym3,Zmym3_Exon,X,101414480,101414529,101414528,101414529,50,-,TTGTAGTAACAGGGGTCAGAGAGGCTGCGGCGGCAGAAGCTGCAGGGTCG,"Exon (Zmym3-203/Zmym3, exon 9 of 24)",20,101404384,101419798,15415,2,Zmym3-203,5269,Zmym3-203;Zmym3-209;Zmym3-206;Zmym3-201;Zmym3-218;Zmym3-212;Zmym3-214;Zmym3-210;Zmym3-215;Zmym3-207;Zmym3-202;Zmym3-208;Zmym3-204;Zmym3-205;Zmym3-211;Zmym3-217;Zmym3-216;Zmym3-213,Zmym3;Zmym3;Zmym3;Zmym3;Zmym3;Zmym3;Zmym3;Zmym3;Zmym3;Zmym3;Zmym3;Zmym3;Zmym3;Zmym3;Zmym3;Zmym3;Zmym3;Zmym3,0;0;0;0;-4746;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,7,56364,ENSMUSG00000031310,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6672,cg25360988,-0.000000385,0.00000132,-0.29167491,0.770730275,loss,ns,-0.00000356,0.00000224,-1.586921109,0.113549952,neg,ns,0.0000195,0.000656347,0.029750337,0.976285311,pos,ns,0.010423245,-0.00000799,0.0000226,-0.354103401,0.723502123,neg,ns,0.967106686,Dennd1a,Dennd1a_Intron,2,37971922,37971971,37971970,37971971,50,+,GCTGAAACATTGTTTATTGCCCCCATAAACATGGCTTAGTGAGAATTACG,"Intron (Dennd1a-201/Dennd1a, intron 11 of 21)",2,37798991,38287375,488385,2,Dennd1a-201,315404,Dennd1a-201;Dennd1a-207;Dennd1a-210;Dennd1a-204,Dennd1a;Dennd1a;Dennd1a;Dennd1a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,46,227801,ENSMUSG00000035392,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6860,cg26548760,-0.000000202,0.00000241,-0.083803092,0.93326708,loss,ns,0.0000065,0.00000409,1.586863606,0.113562981,pos,ns,0.004134605,0.001199472,3.44702133,0.00064508,pos,ns,3.190386109,-0.000112991,0.0000412,-2.739187921,0.006515635,neg,ns,0.04846664,Nr6a1,Nr6a1_Intron,2,38925375,38925424,38925423,38925424,50,+,TTTTACGACCTCACAAAAGCTCCTAACACGTTACCAATAAAAACATTCCG,"Intron (Nr6a1-202/Nr6a1, intron 2 of 11)",2,38723370,38927688,204319,2,Nr6a1-202,2264,Nr6a1-202;Nr6a1-201;Nr6a1-208,Nr6a1;Nr6a1;Nr6a1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,12,14536,ENSMUSG00000063972,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
10029,cg12814030,-0.00000368,0.00000575,-0.63948936,0.522976909,loss,ns,0.0000155,0.00000977,1.586825923,0.11357152,pos,ns,-0.006946257,0.002860912,-2.427987268,0.015751776,neg,ns,1.80267048,0.000192654,0.0000984,1.958132507,0.051111096,pos,ns,0.870775118,Zfp219,Zfp219_Exon,14,52008686,52008735,52008734,52008735,50,+,GCGTGCACCTTCATGTGGTTCTTAAGGAACCAGGGCTCCTTGAAGCAGCG,"Exon (Zfp219-204/Zfp219, exon 3 of 5)",14,52006077,52014582,8506,2,Zfp219-204,5847,Arhgef40-219;Arhgef40-201;Arhgef40-202;Arhgef40-225;Arhgef40-220;Arhgef40-216;Arhgef40-204;Arhgef40-212;Arhgef40-214;Arhgef40-223;Arhgef40-206;Arhgef40-221;Arhgef40-218;Arhgef40-226;Arhgef40-217;Arhgef40-210;Zfp219-204;Zfp219-212;Zfp219-201;Zfp219-202;Zfp219-203;Zfp219-208;Zfp219-213;Zfp219-205;Zfp219-207;Zfp219-210;Zfp219-211;Zfp219-206,Arhgef40;Arhgef40;Arhgef40;Arhgef40;Arhgef40;Arhgef40;Arhgef40;Arhgef40;Arhgef40;Arhgef40;Arhgef40;Arhgef40;Arhgef40;Arhgef40;Arhgef40;Arhgef40;Zfp219;Zfp219;Zfp219;Zfp219;Zfp219;Zfp219;Zfp219;Zfp219;Zfp219;Zfp219;Zfp219;Zfp219,23853;23848;23822;23800;23777;23776;23755;10933;6328;6300;6253;5115;4604;4198;4184;4097;0;0;0;0;-1010;2147;1840;6391;10978;6177;11260;11984,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,69890,ENSMUSG00000049295,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14616,cg26054404,-0.00000352,0.00000243,-1.448210394,0.148568857,loss,ns,0.00000655,0.00000413,1.586749798,0.113588771,pos,ns,0.000985892,0.001209459,0.815151597,0.415611354,pos,ns,0.381312596,-0.0000784,0.0000416,-1.884501687,0.060432572,neg,ns,0.045209144,Nr3c2,Nr3c2_Intron,8,76902010,76902059,76902058,76902059,50,+,AAGCTGCCGAGTCCAGGCTGTGTCGCAGCAACTTTGTATCAGTCATGTCG,"Intron (Nr3c2-207/Nr3c2, intron 1 of 1)",8,76899442,76908413,8972,1,Nr3c2-207,2568,Nr3c2-207;Nr3c2-204;Nr3c2-208;Nr3c2-203;Nr3c2-206;Nr3c2-202,Nr3c2;Nr3c2;Nr3c2;Nr3c2;Nr3c2;Nr3c2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,4,110784,ENSMUSG00000031618,conserved gene and region,8,76901819,76902119,301,*,301,19,0.634551495,0.641863075,0.063122924,4.35E-11,CpGisland,TRUE,U2,Pr-W
15743,cg09198175,0.00000708,0.0000024,2.947875203,0.003442684,gain,ns,0.00000647,0.00000408,1.586662277,0.113608607,pos,ns,0.001869577,0.001194606,1.565016117,0.118599336,pos,ns,0.925917742,-0.000039,0.0000411,-0.950231992,0.342734612,neg,ns,0.06289777,Mogs,Mogs_Exon,6,83116161,83116210,83116209,83116210,50,+,GGCCTTAAGGCTCACCACTGAGTTCGTCAAGAGGCCTGGGGGTCAGCACG,Promoter (<=1kb),6,83115496,83118898,3403,1,Mogs-201,665,Mogs-201;Mogs-202;Wbp1-201;Wbp1-202;Wbp1-205;Wbp1-207;Wbp1-208;Wbp1-204;Wbp1-206;Wbp1-203;Wbp1-209,Mogs;Mogs;Wbp1;Wbp1;Wbp1;Wbp1;Wbp1;Wbp1;Wbp1;Wbp1;Wbp1,0;-306;5349;5349;5349;5177;5196;3998;4668;5049;5064,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,57377,ENSMUSG00000030036,conserved gene but different region,6,83116041,83116266,226,*,226,14,0.637168142,0.61796875,0.061946903,0.000000033,CpGisland,TRUE,U4,Pr-F
14701,cg02659843,-0.0000111,0.00000454,-2.434118979,0.015492472,loss,ns,0.0000122,0.00000772,1.586606344,0.113621285,pos,ns,0.001205025,0.00226104,0.532951883,0.59444873,pos,ns,0.225885597,-0.0000598,0.0000778,-0.769443674,0.442215843,neg,ns,0.891334997,Epha4,Epha4_threeUTR,1,77380964,77381013,77380964,77380965,50,+,CGATAGGCAATTGCTTCTGGCGCAGTCCACCGGATAGGAATCTTGCCACC,3' UTR,1,77367185,77515088,147904,2,Epha4-201,134075,Epha4-201;Epha4-205;Epha4-204;Epha4-203;Epha4-207,Epha4;Epha4;Epha4;Epha4;Epha4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,9,13838,ENSMUSG00000026235,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13874,cg13769431,-0.00000263,0.00000318,-0.826997444,0.408874616,loss,ns,0.00000856,0.0000054,1.586450992,0.113656505,pos,ns,0.00359359,0.001581344,2.272490782,0.023741356,pos,ns,1.624494486,-0.000121266,0.0000544,-2.22988241,0.026471119,neg,ns,0.944680444,Ola1,Ola1_Intron,2,73169859,73169908,73169859,73169860,50,-,CGGGATGTGGAAATCTGAAAATAGAAACCACCAATGATTTGCAACCCTCT,"Intron (Ola1-201/Ola1, intron 4 of 10)",2,73092801,73214447,121647,2,Ola1-201,44539,Ola1-201;Ola1-206;Ola1-203;Ola1-202,Ola1;Ola1;Ola1;Ola1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,19,67059,ENSMUSG00000027108,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20385,cg05982757,0.0000542,0.00000665,8.15110682,9.00E-15,gain,yes,-0.0000179,0.0000113,-1.586071958,0.113742471,neg,ns,0.011643756,0.003311763,3.51587784,0.000503724,pos,ns,3.297807596,-0.000242341,0.000113891,-2.127828139,0.034140141,neg,ns,0.089853584,Hoxc5,Hoxc5_Intron,15,103014703,103014752,103014703,103014704,50,+,CGACGACATAATTGGATCATAGGAACAAAACGTGTATAAAAGGCAATATT,"Intron (Hoxc5-202/Hoxc5, intron 1 of 1)",15,102967443,103015676,48234,1,Hoxc5-202,47260,Hoxc4-202;Hoxc5-202;Hoxc5-201;Hoxc6-202;Hoxc6-203;Hoxc6-201,Hoxc4;Hoxc5;Hoxc5;Hoxc6;Hoxc6;Hoxc6,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,46,134,15424,ENSMUSG00000022485,mapped to different genes,15,103014167,103014734,568,*,568,41,0.588028169,0.835773758,0.072183099,1.73E-25,CpGisland,TRUE,U13,Hc-P
21416,cg23485439,-0.00000266,0.00000137,-1.944564479,0.052731625,loss,ns,0.00000368,0.00000232,1.58572289,0.113821686,pos,ns,0.001949718,0.000679694,2.868521556,0.004406919,pos,ns,2.355864956,-0.0000521,0.0000234,-2.230068649,0.026458618,neg,ns,0.967204902,Zswim6,Zswim6_threeUTR,13,107725855,107725904,107725903,107725904,50,-,AGTCGCTAAGTTTCCACATGCACAAGCATCGTGTGCCATGCTTCTGGACG,3' UTR,13,107724617,107890064,165448,2,Zswim6-204,164160,Zswim6-204;Zswim6-201;Zswim6-203;Zswim6-202,Zswim6;Zswim6;Zswim6;Zswim6,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,26,67263,ENSMUSG00000032846,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16359,cg10170045,0.000000928,0.00000509,0.182186234,0.855555653,gain,ns,-0.0000137,0.00000865,-1.585684702,0.113830355,neg,ns,-0.000123865,0.002534468,-0.048872131,0.96105267,neg,ns,0.01725281,0.000125123,0.0000872,1.435555189,0.152137171,pos,ns,0.89409068,Nfix,Nfix_Exon,8,84771912,84771961,84771960,84771961,50,-,CTTTCCAGGGGGATCCCCTTAAACAAAATCACCATGACCAGGTCCAGCCG,"Exon (Nfix-204/Nfix, exon 2 of 11)",8,84704712,84773396,68685,2,Nfix-204,1435,Nfix-204;Nfix-201;Nfix-202;Nfix-203;Nfix-205,Nfix;Nfix;Nfix;Nfix;Nfix,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,20,49,18032,ENSMUSG00000001911,conserved gene but different region,8,84771960,84772433,474,*,474,36,0.61814346,0.805285512,0.075949367,3.03E-23,CpGisland,TRUE,U13,Hc-P
13228,cg18102203,0.00000611,0.00000661,0.923867323,0.356273945,gain,ns,0.0000178,0.0000112,1.585623724,0.113844198,pos,ns,0.006233565,0.003291583,1.893789661,0.059183793,pos,ns,1.227797202,-0.000179624,0.000113197,-1.586822769,0.113572235,neg,ns,0.8758606,Gm18745,Gm18745_Intron,9,69811773,69811822,69811773,69811774,50,-,CGATATGGTCTGTAAATGCCACCATTGTATGCCTTCCGCTGGCCTTTGAT,"Intron (B230323A14Rik-201/B230323A14Rik-201, intron 2 of 5)",9,69792604,69793151,548,2,Gm18745-201,-18671,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,6,100417660,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12353,cg10662112,-0.00000857,0.0000033,-2.591778588,0.010000082,loss,ns,0.0000089,0.00000561,1.585448625,0.113883956,pos,ns,0.003429521,0.001644852,2.085002538,0.037887025,pos,ns,1.421509494,-0.000174931,0.0000566,-3.092499965,0.002165289,neg,ns,0.932149244,Fign,Fign_Intron,2,63994700,63994749,63994700,63994701,50,-,CGTAATTGAAATGAAGTCTAATCAGACTCATTACTGTTTTCAGCAATTTG,"Intron (Fign-203/Fign, intron 2 of 2)",2,63971507,64098012,126506,2,Fign-203,103263,Fign-203;Fign-201;Fign-202;Fign-204,Fign;Fign;Fign;Fign,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,84,60344,ENSMUSG00000075324,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9533,cg05897263,0.000111368,0.00000708,15.73604424,2.04E-41,gain,yes,-0.0000191,0.000012,-1.585405886,0.113893663,neg,ns,0.007476132,0.003522425,2.122439082,0.034593414,pos,ns,1.461006576,0.0000706,0.000121136,0.582887874,0.560392541,pos,ns,0.044760964,Igf2bp3,Igf2bp3_fiveUTR,6,49214927,49214976,49214927,49214928,50,-,CGGCTTTTTGAATGAGCCACGTGTTCAAACTACAAATCAACGTCTCACGT,Promoter (<=1kb),6,49085223,49214957,129735,2,Igf2bp3-201,0,Igf2bp3-201;Igf2bp3-202;Igf2bp3-203,Igf2bp3;Igf2bp3;Igf2bp3,0;-766;-223,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,5,140488,ENSMUSG00000029814,conserved gene but different region,6,49214800,49215683,884,*,884,82,0.622171946,0.999986205,0.092760181,2.09E-59,CpGisland,TRUE,U1,Pr-A
5360,cg19385010,0.00000577,0.00000141,4.101522517,0.0000525,gain,ns,-0.00000379,0.00000239,-1.585365297,0.113902881,neg,ns,0.002069361,0.000700348,2.954759474,0.003368875,pos,ns,2.472515157,-0.0000626,0.0000241,-2.601156764,0.009736566,neg,ns,0.010941116,Lmx1b,Lmx1b_Intron,2,33616630,33616679,33616678,33616679,50,-,GAGGAATATCAATGGAGTAATTACAGTTACATCGGGCGCCCGCGCCGCCG,"Intron (Lmx1b-201/Lmx1b, intron 2 of 7)",2,33560965,33640608,79644,2,Lmx1b-201,23929,Lmx1b-201;Lmx1b-203;Lmx1b-204;Lmx1b-202,Lmx1b;Lmx1b;Lmx1b;Lmx1b,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,26,16917,ENSMUSG00000038765,conserved gene and region,2,33616662,33616784,123,*,123,19,0.707317073,1.243085106,0.154471545,9.00E-19,CpGisland,TRUE,NA,NRS
18316,cg26590628,0.000056,0.00000448,12.49281251,2.77E-29,gain,yes,-0.0000121,0.00000761,-1.585267762,0.113925035,neg,ns,0.001923957,0.002230237,0.862669499,0.388986082,pos,ns,0.410065938,0.000074,0.0000767,0.965458541,0.335067744,pos,ns,0.126997766,Gm48316,Gm48316_Intergenic_upstream,13,94710115,94710164,94710163,94710164,50,+,CCTGCACGTTTCTCTTTGCATTAGCAAAGCCCAAAGTCATCCAGTTTGCG,Distal Intergenic,13,94752270,94752593,324,1,Gm48316-201,-42106,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,36,42,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
1522,cg25723577,-0.0000245,0.00000601,-4.075687267,0.0000583,loss,ns,-0.0000162,0.0000102,-1.584993721,0.113987299,neg,ns,-0.009119934,0.0029907,-3.049431451,0.0024905,neg,ns,2.603713423,0.00000567,0.00010285,0.055168646,0.956039646,pos,ns,0.865561132,Gm50093,Gm50093_Intergenic_downstream,18,13409812,13409861,13409860,13409861,50,+,TCGTTAATCTGCAAAGCAAGCCCCCTTTCCAGGCCATTAGTGCCAGGACG,Distal Intergenic,18,13372089,13372552,464,1,Gm50093-201,37723,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,11,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16966,cg06685955,-0.0000181,0.00000912,-1.988193958,0.047669452,loss,ns,-0.0000246,0.0000155,-1.584992084,0.113987671,neg,ns,-0.006871286,0.004540536,-1.513320524,0.13121708,neg,ns,0.88200963,0.0000606,0.000156149,0.388090109,0.698215716,pos,ns,0.739837536,Zfp423,Zfp423_Intron,8,87719260,87719309,87719308,87719309,50,-,TTTTTCTTTCAAAAAGGCCGAAGTTGCTGTGAGCCAAGTTCTTGCAGCCG,"Intron (Zfp423-203/Zfp423, intron 3 of 5)",8,87661810,87804439,142630,2,Zfp423-203,85130,Zfp423-203;Zfp423-202;Zfp423-201,Zfp423;Zfp423;Zfp423,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,42,53,94187,ENSMUSG00000045333,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7616,cg22057106,-0.0000115,0.00000476,-2.409990306,0.016535135,loss,ns,-0.0000128,0.00000808,-1.584865982,0.114016332,neg,ns,0.006684813,0.002368467,2.822422268,0.005074243,pos,ns,2.294628706,-0.000266489,0.0000815,-3.271750118,0.001189378,neg,ns,0.939729037,Zbtb20,Zbtb20_Intron,16,43478362,43478411,43478362,43478363,50,-,CGACAGTGTTGATCAAAACTAATTTAGGTAACTTAGAGTTGCCAAAACAC,"Intron (Zbtb20-211/Zbtb20, intron 4 of 4)",16,42907542,43569781,662240,1,Zbtb20-211,570820,Zbtb20-211;Zbtb20-217;Zbtb20-204;Zbtb20-215;Zbtb20-201;Zbtb20-203;Zbtb20-214;Zbtb20-213;Zbtb20-219;Zbtb20-216,Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,98,56490,ENSMUSG00000022708,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6733,cg00614622,-0.000000598,0.000000737,-0.810956215,0.418012978,loss,ns,-0.00000199,0.00000125,-1.584715947,0.114050439,neg,ns,-0.0000325,0.000367006,-0.088548871,0.929497619,neg,ns,0.031751718,-0.0000175,0.0000126,-1.388367861,0.166021888,neg,ns,0.980887219,Gsk3b,Gsk3b_Exon,16,38220092,38220141,38220092,38220093,50,-,CGGGACCCAAATGTCAAACTACCAAATGGGCGAGACACACCTGCACTCTT,"Exon (Gsk3b-201/Gsk3b, exon 9 of 11)",16,38089001,38246084,157084,1,Gsk3b-201,131091,Gsk3b-201;Gsk3b-202;Gsk3b-205,Gsk3b;Gsk3b;Gsk3b,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,11,56637,ENSMUSG00000022812,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9286,cg26255722,-0.00000599,0.00000224,-2.669308899,0.008001104,loss,ns,0.00000604,0.00000381,1.58460122,0.114076526,pos,ns,0.004098208,0.001117267,3.668066548,0.000287556,pos,ns,3.54127772,-0.0000797,0.0000384,-2.074703967,0.038838778,neg,ns,0.947673005,Foxp4,Foxp4_Intron,17,47914891,47914940,47914891,47914892,50,+,CGCTTAACTACAGCATGTCCACAACACCCTTGTTAATTGCGGCCTTTTGA,"Intron (Foxp4-204/Foxp4, intron 1 of 16)",17,47867133,47924645,57513,2,Foxp4-204,9705,Foxp4-204;Foxp4-203;Foxp4-201;Foxp4-202;Foxp4-207,Foxp4;Foxp4;Foxp4;Foxp4;Foxp4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,25,74123,ENSMUSG00000023991,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1343,cg24773146,-0.0000056,0.00000723,-0.773869444,0.439597752,loss,ns,0.0000195,0.0000123,1.584530168,0.114092684,pos,ns,0.001341478,0.00359925,0.372710566,0.709618566,pos,ns,0.148975031,0.0000852,0.000123778,0.687933443,0.49200911,pos,ns,0.083014748,Sox1,Sox1_Promoter,8,12390930,12390979,12390978,12390979,50,-,CAGCATTAGCCTAATTAAAAGCTATAATGTCTGATATAATGATTAAATCG,Promoter (4-5kb),8,12395295,12400126,4832,1,Sox1-201,-4365,Sox1-201,Sox1,0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,1,15,20664,ENSMUSG00000096014,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
15,cg13286426,0.00000686,0.00000429,1.597941252,0.111074804,gain,ns,0.0000116,0.0000073,1.584526005,0.11409363,pos,ns,0.001408319,0.002137577,0.65883892,0.510488265,pos,ns,0.292014237,-0.0000564,0.0000735,-0.766568152,0.443921669,neg,ns,0.914568612,Crem,Crem_threeUTR,18,3295050,3295099,3295050,3295051,50,+,CGTGCTAGTCTGATATATGCTAGTTGGTACTGCCATGGTAGCAATACTAG,3' UTR,18,3266048,3327591,61544,2,Crem-230,32492,Crem-230;Crem-228;Crem-204;Crem-233;Crem-201;Crem-203;Crem-239;Crem-220;Crem-234;Crem-209;Crem-213;Crem-212;Crem-208;Crem-237;Crem-211;Crem-217;Crem-223;Crem-232;Crem-215;Crem-216;Crem-231;Crem-222;Crem-205;Crem-225;Crem-207;Crem-236;Crem-226;Crem-210;Crem-238;Crem-227;Crem-221,Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,4,12916,ENSMUSG00000063889,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10075,cg12440372,0.000212685,0.0000225,9.454449657,8.34E-19,gain,yes,-0.0000606,0.0000382,-1.584485998,0.114102729,neg,ns,0.033297869,0.011196358,2.973991042,0.003170291,pos,ns,2.498900894,-0.001002746,0.000385042,-2.604250834,0.009651001,neg,ns,0.232141678,Hoxa1,Hoxa1_Exon,6,52161080,52161129,52161128,52161129,50,+,AATAAAAATGAATTATGACTAAACGCCTTCTAACTTAATGCTTTCGGACG,Promoter (2-3kb),6,52155595,52158317,2723,2,Hoxa1-202,-2763,Gm28308-201;Hoxa1-201;Hoxa1-202;Hoxa2-201,Gm28308;Hoxa1;Hoxa1;Hoxa2,0;-2763;-2763;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,6,15394,ENSMUSG00000029844,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
9032,cg00941603,0.0000095,0.00000791,1.200677297,0.23079305,gain,ns,-0.0000213,0.0000134,-1.584475604,0.114105093,neg,ns,-0.00530774,0.003938921,-1.347511095,0.178799695,neg,ns,0.747633227,0.0000146,0.000135459,0.107465918,0.914488879,pos,ns,0.800030142,Gm13469,Gm13469_Intergenic_upstream,2,46666553,46666602,46666601,46666602,50,+,CATGCCAGGCTATCATATGCTCAGTGCTTTGAAGCTGCAAATTAATGACG,Distal Intergenic,2,46406220,46406569,350,2,Gm13469-201,-259984,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,20,27,383690,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27447,cg21287024,-0.00000578,0.0000042,-1.378613703,0.169007907,loss,ns,-0.0000113,0.00000713,-1.584386449,0.114125372,neg,ns,0.000560718,0.002088078,0.268533088,0.788467621,pos,ns,0.103216136,-0.0000401,0.0000718,-0.558927352,0.576614829,neg,ns,0.947814099,Pbx1,Pbx1_Intron,1,168245889,168245938,168245889,168245890,50,-,CGCCCTGGGGGTAATAATATTTTCCAGAACGCTCAAGCTAATAGTCCCAT,"Intron (Pbx1-208/Pbx1, intron 2 of 7)",1,168119364,168432270,312907,2,Pbx1-208,186332,Pbx1-208;Pbx1-205;Pbx1-206;Pbx1-201;Pbx1-202;Pbx1-204,Pbx1;Pbx1;Pbx1;Pbx1;Pbx1;Pbx1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,84,18514,ENSMUSG00000052534,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
252,cg01036505,-0.00000941,0.00000199,-4.731359955,0.00000339,loss,ns,0.00000535,0.00000338,1.584328188,0.114138626,pos,ns,0.000616835,0.000989684,0.623264789,0.533568807,pos,ns,0.272809568,-0.0000894,0.000034,-2.62670579,0.009049936,neg,ns,0.957607313,Cdk14,Cdk14_Intron,5,4812217,4812266,4812217,4812218,50,+,CGCCACCAACTAGGCTCAAGAGACTAATTAGAGAGAGTACTGCCTGCGCA,"Intron (Cdk14-203/Cdk14, intron 13 of 13)",5,4803391,5266068,462678,2,Cdk14-203,453802,Cdk14-203;Cdk14-201;Cdk14-202;Cdk14-204,Cdk14;Cdk14;Cdk14;Cdk14,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,16,18647,ENSMUSG00000028926,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27811,cg08502797,0.000014,0.0000104,1.343471531,0.180101937,gain,ns,-0.000028,0.0000177,-1.584298123,0.114145466,neg,ns,-0.007553083,0.005186518,-1.456291692,0.146324045,neg,ns,0.834684303,0.0000715,0.000178364,0.400926198,0.688750654,pos,ns,0.156369802,Esrrg,Esrrg_fiveUTR,1,187997996,187998045,187998044,187998045,50,-,CATGGATTCGGTAGAACTTTGCCTTCCTGAATCTTTTTCCCTGCACTACG,5' UTR,1,187608791,188043502,434712,1,Esrrg-204,389205,Esrrg-204;Esrrg-203;Esrrg-201;Esrrg-202,Esrrg;Esrrg;Esrrg;Esrrg,0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,60,26381,ENSMUSG00000026610,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15483,cg27457480,0.000000872,0.000000858,1.015837918,0.310498743,gain,ns,-0.00000231,0.00000146,-1.584256293,0.114154983,neg,ns,0.00046272,0.000427257,1.083001901,0.279649223,pos,ns,0.553386383,0.00000331,0.0000147,0.225468214,0.821763616,pos,ns,0.975932007,Mrtfa,Mrtfa_fiveUTR,15,81117595,81117644,81117595,81117596,50,+,CGGAAGGGGGCAGGCACACCACACTGGAGAAATCCACTTTGGCTTTCGTG,5' UTR,15,81012281,81190733,178453,2,Mrtfa-204,73089,Mrtfa-204;Mrtfa-209;Mrtfa-211;Mrtfa-203;Mrtfa-202;Mrtfa-208,Mrtfa;Mrtfa;Mrtfa;Mrtfa;Mrtfa;Mrtfa,0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,1,223701,ENSMUSG00000042292,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5144,cg25131378,0.0000122,0.00000274,4.457101203,0.0000116,gain,ns,-0.00000739,0.00000466,-1.58411364,0.114187443,neg,ns,-0.001712053,0.001366112,-1.253229846,0.211066475,neg,ns,0.675580742,0.000168698,0.000047,3.590804918,0.000383144,pos,ns,0.057391606,Fli1,Fli1_fiveUTR,9,32541184,32541233,32541184,32541185,50,-,CGCTTACCTTAATAGTCCCGTCCATTTGGCCAAGTCTGCAGCCGAGCCCC,Promoter (<=1kb),9,32422204,32541595,119392,2,Fli1-201,362,Fli1-201;Fli1-202,Fli1;Fli1,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,15,14247,ENSMUSG00000016087,mapped to different genes,9,32540473,32541408,936,*,936,84,0.681623932,0.774834437,0.08974359,1.46E-59,CpGisland,TRUE,U1,Pr-A
22546,cg06719346,0.0000396,0.00000664,5.962145492,6.77E-09,gain,yes,-0.0000179,0.0000113,-1.583961178,0.114222143,neg,ns,-0.010993096,0.003304538,-3.326667164,0.00098461,neg,ns,3.006735596,0.000382917,0.000113643,3.369482434,0.000848267,pos,ns,0.117674436,Tal1,Tal1_fiveUTR,4,115057507,115057556,115057555,115057556,50,+,GCCTGTGTGCCTGTGTCCTTTAGAGGTGCGTTTGCAAATCGCTGGGGGCG,5' UTR,4,115056426,115071755,15330,1,Tal1-201,1081,Tal1-201;Tal1-202;Tal1-203;Tal1-204,Tal1;Tal1;Tal1;Tal1,0;0;-255;-1952,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,4,21349,ENSMUSG00000028717,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
23650,cg18448782,0.0000402,0.00000999,4.020898464,0.0000729,gain,ns,0.0000269,0.000017,1.583754522,0.114269191,pos,ns,0.003485761,0.004973403,0.70088036,0.483903423,pos,ns,0.315241306,-0.000264289,0.000171035,-1.545232023,0.123310358,neg,ns,0.602650316,Fbxl14,Fbxl14_Exon,6,119480856,119480905,119480856,119480857,50,-,CGCACGCTCAACATTGGACAGTGTGTGCGCATCACGGACAAGGGCCTGGA,"Exon (Fbxl14-201/Fbxl14, exon 1 of 1)",6,119479668,119482630,2963,1,Fbxl14-201,1188,Fbxl14-201;Wnt5b-204;Wnt5b-203,Fbxl14;Wnt5b;Wnt5b,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,101358,ENSMUSG00000030019,conserved gene and region,6,119480816,119480993,178,*,178,15,0.629213483,0.852490422,0.084269663,1.21E-10,CpGisland,TRUE,NA,NRS
16803,cg09063337,0.0000861,0.0000151,5.709760344,2.65E-08,gain,yes,0.0000406,0.0000256,1.583706662,0.11428009,pos,ns,0.031063702,0.007501611,4.140937427,0.0000446,pos,ns,4.350274452,-0.000656417,0.00025798,-2.544453128,0.011429703,neg,ns,0.290871444,Lrba,Lrba_fiveUTR,3,86547659,86547708,86547707,86547708,50,-,CTGGTAAACCAGCTTGGCCTGAGCGGCGATCATGTTGGGGCACAGGTCCG,5' UTR,3,86224680,86746712,522033,1,Lrba-202,322979,Lrba-202;Lrba-204;Lrba-201;Lrba-208;Lrba-203;Lrba-205;Lrba-206;Mab21l2-201;Mab21l2-202,Lrba;Lrba;Lrba;Lrba;Lrba;Lrba;Lrba;Mab21l2;Mab21l2,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,45,80877,ENSMUSG00000028080,mapped to different genes,3,86547682,86547794,113,*,113,11,0.654867257,0.941666667,0.097345133,1.43E-08,CpGisland,TRUE,U3,Pr-B
17274,cg15007639,0.0000384,0.0000102,3.757529126,0.000204991,gain,ns,-0.0000275,0.0000173,-1.583462006,0.114335813,neg,ns,-0.004620261,0.00508247,-0.909058326,0.36402554,neg,ns,0.438868146,-0.000238977,0.000174786,-1.367259195,0.172534623,neg,ns,0.672483803,Gm5356,Gm5356_Intergenic_upstream,8,89387562,89387611,89387610,89387611,50,-,ATGTGAGGTTTGACGGCCATAATGGCTGTTTATAAGCCTAATCCATCACG,Distal Intergenic,8,89186946,89187560,615,2,Gm5356-201,-200051,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,23,23,384862,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1069,cg18252768,0.0000189,0.00000905,2.086946415,0.037709634,gain,ns,0.0000243,0.0000154,1.583384412,0.114353491,pos,ns,0.004016789,0.004503457,0.891934516,0.373119824,pos,ns,0.428151676,-0.0000415,0.000154874,-0.268199349,0.788724252,neg,ns,0.875518458,Gm14515,Gm14515_Intergenic_upstream,X,11480113,11480162,11480113,11480114,50,+,CGAATCTGTCAGATGCAGGAATTTCTGGTGCTCGTGACTGTTGTAATTAA,Distal Intergenic,20,11601354,11601569,216,1,Gm14515-201,-121192,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,21,28,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2910,cg03441203,-0.00000346,0.00000505,-0.684145292,0.49439453,loss,ns,0.0000136,0.00000858,1.583342417,0.114363059,pos,ns,0.001409749,0.00251403,0.560752499,0.575371334,pos,ns,0.240051779,-0.0000859,0.0000865,-0.992995154,0.321486758,neg,ns,0.886995233,Lrmda,Lrmda_Intron,14,22046264,22046313,22046264,22046265,50,+,CGAAAGTGCCTTAAATGTCTTTGGCTGTCAGAATGAGATGTTAGGAGCTT,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,26552,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206,Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22067,cg15154755,0.0000732,0.00000801,9.135231943,8.72E-18,gain,yes,-0.0000215,0.0000136,-1.583339474,0.114363729,neg,ns,0.010725466,0.003986597,2.690381068,0.007523899,pos,ns,2.123557053,-0.000437789,0.000137099,-3.19323972,0.001551404,neg,ns,0.084156752,Grm7,Grm7_Exon,6,110645876,110645925,110645924,110645925,50,-,GCTGAGGAAGCTGCTCCGCGTCCTGACTTTGATGAAGTTCCCCTGCTGCG,Promoter (<=1kb),6,110645581,111497090,851510,1,Grm7-204,295,Grm7-204;Grm7-201;Grm7-202,Grm7;Grm7;Grm7,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,6,108073,ENSMUSG00000056755,conserved gene and region,6,110645761,110646072,312,*,312,31,0.705128205,0.79940491,0.099358974,8.47E-24,CpGisland,TRUE,U13,Hc-P
15224,cg21485117,-0.00000019,0.00000117,-0.162440531,0.871064787,loss,ns,0.00000314,0.00000198,1.583229749,0.114388732,pos,ns,0.002165694,0.000580753,3.729116364,0.000228416,pos,ns,3.641273426,-0.0000582,0.00002,-2.912058265,0.003851111,neg,ns,0.970360131,Tmem30a,Tmem30a_Exon,9,79771398,79771447,79771446,79771447,50,+,AAAAATGGATTTTTTCCTCCCATCCATGAAATAGTGCTCAAGATCATCCG,"Exon (Tmem30a-201/Tmem30a, exon 7 of 7)",9,79768943,79793430,24488,2,Tmem30a-201,21983,Tmem30a-201;Tmem30a-202;Tmem30a-204,Tmem30a;Tmem30a;Tmem30a,0;0;21983,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,69981,ENSMUSG00000032328,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22563,cg26248737,-0.00000117,0.00000339,-0.346399191,0.729277729,loss,ns,-0.00000911,0.00000576,-1.582939017,0.114455002,neg,ns,-0.003402394,0.001686289,-2.017681746,0.044485748,neg,ns,1.351779104,0.0000265,0.000058,0.456213338,0.64855602,pos,ns,0.921397445,Wwox,Wwox_Intron,8,115150157,115150206,115150157,115150158,50,-,CGGGGAGGAAATTTAACTTTTGTGGAAATGTGATGTGTGTTTAAATTACC,"Intron (Wwox-201/Wwox, intron 8 of 8)",8,114439655,115352708,913054,1,Wwox-201,710502,Wwox-201;Wwox-209,Wwox;Wwox,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,32,32,80707,ENSMUSG00000004637,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3019,cg00389116,-0.0000224,0.00000756,-2.96283155,0.003284176,loss,ns,0.0000203,0.0000128,1.582808186,0.114484834,pos,ns,0.008779022,0.003764016,2.33235503,0.020321961,pos,ns,1.692034396,-0.000443711,0.000129444,-3.427816327,0.000690669,neg,ns,0.828484943,Asxl3,Asxl3_fiveUTR,18,22409922,22409971,22409970,22409971,50,-,GGAACCTCTCCATTAGCCTGTCTGAATGCAATGCTTCACACTAACACTCG,5' UTR,18,22344246,22530015,185770,1,Asxl3-204,65676,Asxl3-204;Asxl3-202;Asxl3-201,Asxl3;Asxl3;Asxl3,0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,5,211961,ENSMUSG00000045215,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20324,cg09481972,0.0000575,0.00000478,12.02044222,1.40E-27,gain,yes,-0.0000129,0.00000813,-1.582797232,0.114487332,neg,ns,0.002872299,0.002380746,1.206470042,0.228556196,pos,ns,0.641007001,0.0000175,0.0000819,0.214043715,0.830653684,pos,ns,0.122367224,Hoxc6,Hoxc6_Exon,15,102998229,102998278,102998229,102998230,50,+,CGCTCCGCAGAACAGTCCTCCCTGTAAGAGCCTAACCATTGCCAGGGAAA,Promoter (<=1kb),15,102998257,103010768,12512,1,Hoxc6-202,0,Hoxc5-202;Hoxc6-202;Hoxc6-203;Hoxc8-201;Hoxc8-202,Hoxc5;Hoxc6;Hoxc6;Hoxc8;Hoxc8,0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,15425,ENSMUSG00000001661,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
11776,cg14384491,-0.00000743,0.00000435,-1.709406506,0.088376412,loss,ns,0.0000117,0.00000739,1.582462883,0.114563599,pos,ns,0.001231162,0.002163981,0.568933949,0.569812916,pos,ns,0.244267711,-0.000130795,0.0000744,-1.75754122,0.079812611,neg,ns,0.931714428,Cdh23,Cdh23_Intron,10,60555599,60555648,60555599,60555600,50,+,CGGTGTTATTACAAGAAATGACAAATAAATCTGTAACAGTGGGACCCTTC,"Intron (Cdh23-201/Cdh23, intron 5 of 66)",10,60302748,60657333,354586,2,Cdh23-201,101685,Cdh23-201;Cdh23-203;Cdh23-202;Cdh23-204;Cdh23-205;Cdh23-209;Cdh23-210,Cdh23;Cdh23;Cdh23;Cdh23;Cdh23;Cdh23;Cdh23,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,14,22295,ENSMUSG00000012819,conserved gene and region,10,60555489,60555600,112,*,112,9,0.392857143,2.086956522,0.080357143,0.00000238,CpGisland,TRUE,NA,NRS
15954,cg21024532,-0.00000412,0.00000203,-2.027530839,0.043463351,loss,ns,0.00000546,0.00000345,1.582436388,0.114569644,pos,ns,0.001358835,0.001010439,1.344796597,0.179673995,pos,ns,0.745514777,-0.0000915,0.0000347,-2.631748859,0.008919653,neg,ns,0.947772613,Gm8447,Gm8447_Intron,13,83984710,83984759,83984710,83984711,50,+,CGCGTCTGAAATAAAAGCTGTTTATTCTTGTGTTTCACTGTCTGTAACAA,"Intron (Gm4241-201/Gm4241-201, intron 1 of 1)",13,83997547,83998439,893,2,Gm8447-201,13680,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,9,667081,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22490,cg24588069,0.00000267,0.00000383,0.69699934,0.486325551,gain,ns,-0.0000103,0.00000651,-1.582430101,0.114571079,neg,ns,-0.004973203,0.001906341,-2.608768465,0.009527277,neg,ns,2.021031216,-0.0000555,0.0000656,-0.847036988,0.397627943,neg,ns,0.866942672,Insc,Insc_Exon,7,114834753,114834802,114834801,114834802,50,-,AACTGTGCCAAGAGGCCTCATCAGGGGAAGTCTTCCTACTGGCCTCTGCG,"Exon (Insc-208/Insc, exon 9 of 13)",7,114745766,114850380,104615,1,Insc-208,88987,Insc-208;Insc-201;Insc-205,Insc;Insc;Insc,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,233752,ENSMUSG00000048782,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1781,cg23434234,-0.00000924,0.00000287,-3.218275613,0.001426157,loss,ns,0.00000771,0.00000488,1.582356572,0.114587857,pos,ns,0.004120258,0.001428389,2.88454886,0.004194326,pos,ns,2.377337838,-0.000125794,0.0000491,-2.560837497,0.010915349,neg,ns,0.074368667,Foxp2,Foxp2_Intron,6,15186259,15186308,15186259,15186260,50,+,CGTTTGGGTGCCTCTCTGTGCCGTGCTGTGTAGAGCAGATGTTTATTTTG,"Intron (Foxp2-207/Foxp2, intron 3 of 18)",6,14901349,15441977,540629,1,Foxp2-207,284910,Foxp2-207;Foxp2-213;Foxp2-208;Foxp2-211;Foxp2-217;Foxp2-203;Foxp2-216;Foxp2-205;Foxp2-204;Foxp2-201;Foxp2-210,Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,38,65,114142,ENSMUSG00000029563,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
7119,cg00431974,0.0000129,0.00000432,2.991733326,0.002996653,gain,ns,0.0000116,0.00000733,1.582235544,0.114615479,pos,ns,0.004135482,0.002148364,1.924945097,0.055151061,pos,ns,1.258446131,-0.0000619,0.0000739,-0.838204375,0.402561743,neg,ns,0.937617725,Zfpm2,Zfpm2_Intron,15,41064289,41064338,41064337,41064338,50,-,ACCCGTGTGATCAATAGAGAGACAGATGTCGGGTGCAGATGGCGATGCCG,"Intron (Zfpm2-201/Zfpm2, intron 5 of 7)",15,40655035,41104592,449558,1,Zfpm2-201,409254,Zfpm2-201;Zfpm2-203,Zfpm2;Zfpm2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,41,22762,ENSMUSG00000022306,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24238,cg10466503,-0.00000403,0.00000192,-2.097950791,0.036718748,loss,ns,0.00000517,0.00000327,1.581971544,0.114675749,pos,ns,0.001244212,0.000956859,1.300308387,0.194461179,pos,ns,0.711167085,-0.000058,0.0000329,-1.762913431,0.078900358,neg,ns,0.951412196,Gm12902,Gm12902_Intergenic_downstream,4,124087208,124087257,124087256,124087257,50,-,CCCTGAAATTAAACATTATTACAGAGCGGATATTTAAAAAGCTGGGGCCG,Distal Intergenic,4,123926234,123926555,322,1,Gm12902-201,161023,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,34,34,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1256,cg01301326,0.0000307,0.0000135,2.278373338,0.023384455,gain,ns,0.0000362,0.0000229,1.581955433,0.114679428,pos,ns,0.034219301,0.006700353,5.107089202,0.000000572,pos,ns,6.242277366,-0.001098791,0.000230425,-4.768547907,0.00000286,neg,ns,0.124471616,Bcor,Bcor_Exon,X,12136912,12136961,12136912,12136913,50,+,CGGGCTGTTAACAGGCAGTTGCAATCAGTTTCCGAAAGGTCAGCCAAGGT,"Exon (Bcor-208/Bcor, exon 3 of 5)",20,12036743,12160355,123613,2,Bcor-201,23394,Bcor-201;Bcor-208,Bcor;Bcor,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,74,71458,ENSMUSG00000040363,conserved gene but different region,X,12136836,12137187,352,*,352,27,0.613636364,0.817337461,0.076704546,1.07E-17,CpGisland,TRUE,NA,NRS
5606,cg12688234,0.0000735,0.0000117,6.263293099,1.26E-09,gain,yes,-0.0000316,0.0000199,-1.58186709,0.114699602,neg,ns,0.017865392,0.005843222,3.057455551,0.002426698,pos,ns,2.614984207,-0.000519393,0.000200948,-2.584713349,0.010202804,neg,ns,0.158456673,Insyn2b,Insyn2b_fiveUTR,11,34314785,34314834,34314785,34314786,50,+,CGTGAGCAGACCCACTACACTTCTTGCATATAAACAGTGAAAATTACAAT,Promoter (<=1kb),11,34314822,34422639,107818,1,Insyn2b-201,0,Dock2-201;Dock2-203;Dock2-207;Insyn2b-202;Insyn2b-201,Dock2;Dock2;Dock2;Insyn2b;Insyn2b,0;0;-2148;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,1,574403,ENSMUSG00000069911,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2442,cg03319479,0.0000149,0.00000285,5.226445138,0.000000318,gain,yes,-0.00000766,0.00000485,-1.581673113,0.114743909,neg,ns,0.004222887,0.001419687,2.974519096,0.003164993,pos,ns,2.499627298,-0.000111476,0.0000488,-2.283279198,0.023090399,neg,ns,0.053178825,Ptf1a,Ptf1a_Exon,2,19451969,19452018,19452017,19452018,50,-,GATAGAAAATATTGTCATTTCTTTTAATTCACAGCATTACTTTCAAGCCG,"Exon (1810010K12Rik-201/1810010K12Rik-201, exon 1 of 1)",2,19445663,19447501,1839,1,Ptf1a-201,6355,Ptf1a-201,Ptf1a,6306,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,21,19213,ENSMUSG00000026735,conserved gene but different region,2,19452017,19452139,123,*,123,15,0.715447155,1.044142615,0.12195122,4.07E-13,CpGisland,TRUE,U13,Hc-P
9623,cg23352252,0.00000108,0.00000124,0.875354497,0.382058766,gain,ns,-0.00000332,0.0000021,-1.581558706,0.114770048,neg,ns,-0.0005317,0.000615581,-0.863735951,0.388400748,neg,ns,0.410719942,0.0000173,0.0000212,0.819093006,0.413362594,pos,ns,0.965759985,Epc2,Epc2_threeUTR,2,49551053,49551102,49551053,49551054,50,+,CGGTTCTTGTAAATTAGATACGTGTAGTGGTGTTTCAGAATGTTTGTTTA,3' UTR,2,49451486,49551948,100463,1,Epc2-201,99567,Epc2-201,Epc2,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,14,227867,ENSMUSG00000069495,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5605,cg00101279,0.00000129,0.00000124,1.041398323,0.298502207,gain,ns,-0.00000332,0.0000021,-1.581443615,0.114796347,neg,ns,0.000574911,0.00061547,0.93410036,0.350979135,pos,ns,0.454718701,-0.00000146,0.0000212,-0.068997567,0.94503604,neg,ns,0.961853422,Apc,Apc_threeUTR,18,34310816,34310865,34310816,34310817,50,+,CGGAGCCAGACAAACACTTTAGCCATTATTGAAAGTGGAGGTGGGATATT,3' UTR,18,34220924,34313506,92583,1,Apc-209,89892,Apc-209;Apc-203;Apc-202;Apc-205;Apc-206,Apc;Apc;Apc;Apc;Apc,0;0;0;0;9555,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,7,11789,ENSMUSG00000005871,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11335,cg22720332,-0.00000304,0.0000031,-0.982397262,0.326670256,loss,ns,-0.00000832,0.00000526,-1.581436988,0.114797862,neg,ns,-0.001072444,0.001542077,-0.695454248,0.487291666,neg,ns,0.312211016,-0.0000216,0.000053,-0.406642752,0.68455099,neg,ns,0.022998279,Zhx2,Zhx2_fiveUTR,15,57694630,57694679,57694678,57694679,50,-,ATCGTATGCAAATACGCATGCTGACGTTACAGATCATGTGGGTTTTGGCG,Promoter (<=1kb),15,57694665,57839832,145168,1,Zhx2-201,0,Zhx2-201;Zhx2-202,Zhx2;Zhx2,0;-1050,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,6,387609,ENSMUSG00000071757,conserved gene and region,15,57694551,57694697,147,*,147,11,0.551020408,1.004347826,0.074829932,0.000000227,CpGisland,TRUE,U2,Pr-W
19584,cg14211535,-0.00000303,0.00000205,-1.479568341,0.140003954,loss,ns,-0.00000551,0.00000348,-1.581358022,0.114815909,neg,ns,-0.000745665,0.001020858,-0.730429864,0.465679114,neg,ns,0.33191324,0.0000099,0.0000351,0.28186892,0.778232096,pos,ns,0.924069623,Hnrnpd,Hnrnpd_threeUTR,5,99962177,99962226,99962177,99962178,50,+,CGACACAGGGCCTGCAATGAAGTTCCCGCTGGCGGGTACAAACAAGGTAT,3' UTR,5,99955935,99978938,23004,2,Hnrnpd-211,16712,Hnrnpd-211;Hnrnpd-201;Hnrnpd-203;Hnrnpd-202;Hnrnpd-208;Hnrnpd-209;Hnrnpd-204;Hnrnpd-205;Hnrnpd-206;Hnrnpd-210,Hnrnpd;Hnrnpd;Hnrnpd;Hnrnpd;Hnrnpd;Hnrnpd;Hnrnpd;Hnrnpd;Hnrnpd;Hnrnpd,0;0;0;0;0;0;0;0;4161;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,8,11991,ENSMUSG00000000568,conserved gene and region,5,99962102,99962210,109,*,109,11,0.614678899,1.07437276,0.100917431,9.65E-09,CpGisland,TRUE,U10,Tr-S
21826,cg17853561,-0.00000977,0.0000057,-1.715235324,0.087301348,loss,ns,0.0000153,0.00000968,1.581183038,0.11485591,pos,ns,-0.000670812,0.002834652,-0.236647084,0.813086883,neg,ns,0.089863045,0.0000516,0.0000975,0.5293994,0.59690731,pos,ns,0.91241771,Lmo1,Lmo1_Intron,7,109221089,109221138,109221137,109221138,50,-,ATTGTTTTAATAAACATAAACCGGGTAATAATAAAGTCATAATAAGCCCG,"Intron (Gm45024-201/Gm45024-201, intron 2 of 2)",7,109138675,109175207,36533,2,Lmo1-202,-45931,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,66,109594,ENSMUSG00000036111,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18363,cg14212534,0.0000135,0.0000033,4.081682383,0.0000569,gain,ns,0.00000887,0.00000561,1.580996808,0.114898493,pos,ns,0.00746438,0.001643221,4.542528899,0.00000797,pos,ns,5.098490797,-0.000101866,0.0000565,-1.802604185,0.072421536,neg,ns,0.086977176,Otp,Otp_Promoter,13,94872531,94872580,94872579,94872580,50,+,GGAAATGCCTTAAATTATCAACAGCAATGGGCCTGACCGGCACTTTCCCG,Promoter (3-4kb),13,94875602,94885130,9529,1,Otp-201,-3022,Otp-201,Otp,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,27,34,18420,ENSMUSG00000021685,conserved gene and region,13,94872568,94872819,252,*,252,16,0.626984127,0.654545455,0.063492064,1.84E-09,CpGisland,TRUE,U13,Hc-P
11628,cg23677945,0.000122232,0.0000136,8.992489216,2.45E-17,gain,yes,-0.0000365,0.0000231,-1.580977172,0.114902984,neg,ns,0.026387349,0.00676523,3.900436412,0.000117771,pos,ns,3.928960892,-0.001162465,0.000232656,-4.996503345,0.000000977,neg,yes,0.316186582,Fzd7,Fzd7_Exon,1,59483936,59483985,59483936,59483937,50,+,CGCAGGGCACCAAGAAGGAGGGCTGCACCATCCTCTTCATGGTGCTCTAC,"Exon (Fzd7-201/Fzd7, exon 1 of 1)",1,59482424,59486955,4532,1,Fzd7-201,1512,Fzd7-201,Fzd7,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,14369,ENSMUSG00000041075,conserved gene and region,1,59483534,59483937,404,*,404,34,0.631188119,0.844980315,0.084158416,1.65E-23,CpGisland,TRUE,U4,Pr-F
18573,cg00295657,0.0000552,0.00000789,6.993501816,1.66E-11,gain,yes,-0.0000212,0.0000134,-1.580533456,0.115004497,neg,ns,0.005622253,0.003927112,1.431650859,0.153251183,pos,ns,0.814596165,-0.0000846,0.000135053,-0.626114869,0.531700329,neg,ns,0.129884589,Hoxb6,Hoxb6_Intron,11,96298956,96299005,96298956,96298957,50,+,CGCTCCTCCTGGGTGCTATTTGACAATTCCTGCCTCTGCCATTGGTCAGT,"Intron (Hoxb6-202/Hoxb6, intron 1 of 2)",11,96292476,96301569,9094,1,Hoxb6-202,6480,Hoxb5-202;Hoxb5-201;Hoxb6-202;Hoxb6-201,Hoxb5;Hoxb5;Hoxb6;Hoxb6,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,16,15414,ENSMUSG00000000690,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
26117,cg13586227,-0.00000589,0.00000226,-2.607665752,0.009557345,loss,ns,0.00000606,0.00000383,1.580499737,0.115012214,pos,ns,0.001619939,0.00112331,1.442112392,0.150280175,pos,ns,0.823098307,-0.0000622,0.0000386,-1.611311151,0.108129569,neg,ns,0.953442623,Gm2505,Gm2505_Intergenic_downstream,3,143998193,143998242,143998241,143998242,50,-,ATCTTCATTTAATATAATCCAAAAAAGCAAGGTAATTGCTTCACTTATCG,Distal Intergenic,3,143872995,143873819,825,1,Gm2505-201,125247,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,37,100039938,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15148,cg22359606,0.0000318,0.00000391,8.143545084,9.48E-15,gain,yes,0.0000105,0.00000663,1.580261168,0.115066826,pos,ns,0.00440023,0.001943655,2.263894097,0.024271463,pos,ns,1.61490404,-0.0000107,0.0000668,-0.160547981,0.872553996,neg,ns,0.099368855,Cerkl,Cerkl_Promoter,2,79456870,79456919,79456870,79456871,50,-,CGCCATATGGTCTTCCCGGTCCAGCCAAGAGCCTGGAACCACGTGACCTG,Promoter (<=1kb),2,79338569,79456785,118217,2,Cerkl-210,-134,Cerkl-210;Neurod1-201,Cerkl;Neurod1,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,13,15,228094,ENSMUSG00000075256,mapped to different genes,2,79456843,79457022,180,*,180,14,0.622222222,0.830039526,0.077777778,1.72E-09,CpGisland,TRUE,NA,NRS
12413,cg11499678,-0.00000369,0.0000013,-2.837157114,0.004851579,loss,ns,0.00000349,0.00000221,1.579754752,0.115182819,pos,ns,0.000470421,0.000647571,0.726438778,0.468117969,pos,ns,0.329644687,0.00000302,0.0000223,0.135608299,0.892218958,pos,ns,0.054105062,Klf7,Klf7_Exon,1,64120950,64120999,64120950,64120951,50,-,CGTGGACAAGTTGTAGCTCCTGGAATATACTATAACTAGCCAACACGTCC,Promoter (<=1kb),1,64029447,64121491,92045,2,Klf7-202,492,Klf7-202;Klf7-201;Klf7-203,Klf7;Klf7;Klf7,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,21,93691,ENSMUSG00000025959,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
11700,cg22701693,0.000132177,0.0000125,10.57313711,1.63E-22,gain,yes,-0.0000335,0.0000212,-1.579664383,0.115203528,neg,ns,-0.002548803,0.006221992,-0.409644226,0.682349864,neg,ns,0.16599289,0.000115961,0.000213974,0.541940869,0.588248557,pos,ns,0.526189692,Gas1,Gas1_Intergenic_downstream,13,60147306,60147355,60147354,60147355,50,+,AGCTCATAAATCGTGAAAGATCACCACTTCTTTTCAAAAGCCTCTCCACG,Distal Intergenic,13,60175787,60176941,1155,2,Gas1-202,29586,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,10,14451,ENSMUSG00000052957,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25074,cg07922932,-0.00000546,0.00000291,-1.877332635,0.0614114,loss,ns,0.00000781,0.00000494,1.579663878,0.115203644,pos,ns,0.002596596,0.001447922,1.793326239,0.073895409,pos,ns,1.131382542,-0.0000747,0.0000498,-1.49955468,0.134747482,neg,ns,0.933706944,Gpcpd1,Gpcpd1_threeUTR,2,132530686,132530735,132530686,132530687,50,+,CGTTCCAATTGCTCCACTTGGAATATATTTGGTTGTTCAGGCATCCAATC,3' UTR,2,132529082,132542031,12950,2,Gpcpd1-208,11296,Gpcpd1-208;Gpcpd1-212;Gpcpd1-204;Gpcpd1-202;Gpcpd1-213;Gpcpd1-211;Gpcpd1-205;Gpcpd1-201;Gpcpd1-207,Gpcpd1;Gpcpd1;Gpcpd1;Gpcpd1;Gpcpd1;Gpcpd1;Gpcpd1;Gpcpd1;Gpcpd1,0;0;0;0;0;0;0;0;7392,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,3,74182,ENSMUSG00000027346,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
957,cg05382001,-0.00000364,0.00000165,-2.202394283,0.028373359,loss,ns,0.00000443,0.0000028,1.579497092,0.115241871,pos,ns,0.000582622,0.000821689,0.709054684,0.478823443,pos,ns,0.319824595,-0.0000207,0.0000283,-0.732616796,0.464345748,neg,ns,0.029465125,Taf3,Taf3_Exon,2,10048341,10048390,10048341,10048342,50,-,CGCCTGGCAGATCTGCGCCACCGAGACCCTCAACAACGACCTGGAGTAAC,Promoter (<=1kb),2,9914552,10048596,134045,2,Taf3-201,206,Taf3-201,Taf3,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,7,209361,ENSMUSG00000025782,conserved gene and region,2,10047801,10048828,1028,*,1028,84,0.660505837,0.750052116,0.081712062,5.22E-56,CpGisland,TRUE,NA,NRS
9398,cg03686174,0.00000296,0.0000166,0.178150948,0.858720791,gain,ns,0.0000446,0.0000282,1.579364546,0.115272259,pos,ns,0.021864784,0.008266563,2.644966684,0.008586135,pos,ns,2.066202301,-0.000877309,0.000284286,-3.086004052,0.002211695,neg,ns,0.669211876,Tenm3,Tenm3_Exon,8,48646418,48646467,48646466,48646467,50,-,ATCTGACCCTGCACTGATAGAGTAACCTCTGTGAGGGAGCCCCATTTCCG,"Exon (Tenm3-201/Tenm3, exon 2 of 29)",8,48227682,48674690,447009,2,Tenm3-201,28223,Tenm3-201;Tenm3-206;Tenm3-207,Tenm3;Tenm3;Tenm3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,39,23965,ENSMUSG00000031561,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11469,cg22660217,-0.000001,0.00000243,-0.412494786,0.680261923,loss,ns,-0.00000652,0.00000413,-1.57932952,0.11528029,neg,ns,0.0000568,0.001209235,0.046962334,0.962573487,pos,ns,0.016566105,-0.00000994,0.0000416,-0.238934503,0.811314251,neg,ns,0.947059909,Hnrnpk,Hnrnpk_fiveUTR,13,58397995,58398044,58397995,58397996,50,+,CGGAGATATATGGCCAAAAAAACAAGGAGAGGGAAAAGGGGGAAAAGCAA,Promoter (<=1kb),13,58395265,58398017,2753,2,Hnrnpk-207,0,Hnrnpk-202;Hnrnpk-224;Hnrnpk-221;Hnrnpk-232;Hnrnpk-216;Hnrnpk-201;Hnrnpk-205;Hnrnpk-217;Hnrnpk-206;Hnrnpk-209;Hnrnpk-213;Hnrnpk-227;Hnrnpk-234;Hnrnpk-233;Hnrnpk-228;Hnrnpk-214;Hnrnpk-215;Hnrnpk-211;Hnrnpk-208;Hnrnpk-212;Hnrnpk-231;Hnrnpk-230;Hnrnpk-203;Hnrnpk-218;Hnrnpk-226;Hnrnpk-207;Hnrnpk-219;Hnrnpk-225;Hnrnpk-229;Hnrnpk-223;Hnrnpk-220;Hnrnpk-210;Hnrnpk-204;Hnrnpk-222;Rmi1-205;Rmi1-201;Rmi1-204;Rmi1-203,Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Rmi1;Rmi1;Rmi1;Rmi1,0;0;0;0;0;0;0;-4127;-3210;-4020;-2797;-3911;-4106;-3825;-3299;0;-2275;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;4458;4011;-4204;-4219;-4656;-4899,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,10,19,15387,ENSMUSG00000021546,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11101,cg11824591,-0.000000661,0.00000412,-0.16056357,0.872541728,loss,ns,0.000011,0.000007,1.579224274,0.115304424,pos,ns,0.00631729,0.002049615,3.08218317,0.002239417,pos,ns,2.6498651,-0.000215604,0.0000705,-3.058811621,0.002416066,neg,ns,0.894385936,Gm13527,Gm13527_Intergenic_upstream,2,56593657,56593706,56593705,56593706,50,+,TCCTTGTGACATGTTGGTGATAGATCATTATTTTTTCAGCAATTTGTTCG,Distal Intergenic,2,57079748,57080438,691,1,Gm13527-201,-486042,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,13,13,227920,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12870,cg09829700,-0.00000244,0.00000152,-1.605644904,0.109370105,loss,ns,0.00000407,0.00000258,1.57901883,0.115351546,pos,ns,0.000379945,0.000754867,0.503326763,0.615091996,pos,ns,0.211059924,0.0000025,0.000026,0.096148297,0.923464919,pos,ns,0.058279821,Spire1,Spire1_Exon,18,67610583,67610632,67610631,67610632,50,+,CTCGTTGATGGGCTGGTTGTACAGCCGCAGGATCTCCTCCAGGCTCAGCG,Promoter (<=1kb),18,67488209,67610790,122582,2,Spire1-203,158,Spire1-203,Spire1,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,68166,ENSMUSG00000024533,conserved gene and region,18,67610213,67611300,1088,*,1088,156,0.752757353,1.0137978,0.143382353,8.84E-146,CpGisland,TRUE,U1,Pr-A
5137,cg23653660,-0.0000287,0.00000947,-3.036850209,0.002593648,loss,ns,0.0000254,0.0000161,1.578984117,0.11535951,pos,ns,0.002876074,0.004711369,0.610453931,0.542008422,pos,ns,0.265993965,-0.0000537,0.000162024,-0.331519467,0.740476143,neg,ns,0.73050369,Ppp1cb,Ppp1cb_Exon,5,32487645,32487694,32487645,32487646,50,-,CGAGTTTGATAATGCTGGTGGAATGATGAGTGTGGATGAAACTTTGATGT,"Exon (Ppp1cb-201/Ppp1cb, exon 7 of 8)",5,32458843,32495523,36681,1,Ppp1cb-201,28802,Ppp1cb-201;Ppp1cb-203;Ppp1cb-206;Ppp1cb-202;Ppp1cb-205,Ppp1cb;Ppp1cb;Ppp1cb;Ppp1cb;Ppp1cb,0;0;0;9550;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,2,19046,ENSMUSG00000014956,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5669,cg21826256,-0.00000211,0.00000161,-1.317303811,0.188709622,loss,ns,0.0000043,0.00000273,1.578645622,0.115437187,pos,ns,0.001378769,0.000798881,1.725875576,0.085366226,pos,ns,1.06871392,-0.0000487,0.0000275,-1.773571932,0.077115672,neg,ns,0.967141812,Mapkap1,Mapkap1_Intron,2,34531328,34531377,34531328,34531329,50,-,CGTCCGCAGGTGTAGCATGGTGATACATATTACATTGTGCCACAATGGAT,"Intron (Mapkap1-204/Mapkap1, intron 5 of 10)",2,34406862,34623475,216614,1,Mapkap1-204,124466,Mapkap1-204;Mapkap1-202;Mapkap1-201;Mapkap1-209;Mapkap1-203;Mapkap1-207,Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,59,227743,ENSMUSG00000038696,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1480,cg12052580,-0.0000547,0.0000063,-8.682160783,2.25E-16,loss,yes,0.0000169,0.0000107,1.578632714,0.11544015,pos,ns,-0.004711316,0.00313601,-1.502328415,0.134030255,neg,ns,0.872797157,0.000138336,0.000107847,1.282704046,0.200554022,pos,ns,0.927006639,Rpl21-ps2,Rpl21-ps2_Promoter,12,13158215,13158264,13158215,13158216,50,+,CGGGCCACTTCATTACTTTGTGCTTAAGGAAATGCCTCCCAGCTCTGCAC,Promoter (8-9kb),12,13149680,13150160,481,2,Rpl21-ps2-201,-8055,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,4,628449,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25012,cg14569439,0.0000367,0.00000463,7.917587992,4.35E-14,gain,yes,-0.0000124,0.00000787,-1.578631871,0.115440343,neg,ns,0.001444716,0.002305436,0.626656176,0.531345832,pos,ns,0.274622722,0.000156163,0.0000793,1.969673676,0.049765824,pos,ns,0.13731909,Fgfr2,Fgfr2_Intron,7,131542389,131542438,131542437,131542438,50,-,CTTGTCCTCATTTGCTGCCTAATTGGACTATATAAAGCCAATAACGGGCG,"Intron (Fgfr2-217/Fgfr2, intron 2 of 6)",7,130162451,133123350,2960900,2,Fgfr2-217,1580912,Fgfr2-217;Hmx3-201,Fgfr2;Hmx3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,58,79,14183,ENSMUSG00000030849,mapped to different genes,7,131542437,131542590,154,*,154,16,0.668831169,0.931216931,0.103896104,8.54E-13,CpGisland,TRUE,NA,NRS
9206,cg03257878,0.0000538,0.0000168,3.205409074,0.001489305,gain,ns,-0.000045,0.0000285,-1.578541943,0.115460987,neg,ns,0.046540119,0.008353574,5.571282123,5.49E-08,pos,ns,7.260184805,-0.001583957,0.000287279,-5.513660289,7.41E-08,neg,yes,0.359257088,Cadm1,Cadm1_Intron,9,47533602,47533651,47533650,47533651,50,+,CAGTGTGTCACTGGAGACGCACAAGGCTTCATTTAGTGACTTGTGTGACG,"Intron (Cadm1-204/Cadm1, intron 1 of 9)",9,47530173,47853385,323213,1,Cadm1-204,3429,Cadm1-204;Cadm1-209;Cadm1-206;Cadm1-202;Cadm1-203;Cadm1-207;Cadm1-205;Cadm1-211;Cadm1-210;Cadm1-208;Cadm1-201,Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,77,54725,ENSMUSG00000032076,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27894,cg12495173,0.000200207,0.0000326,6.133866783,2.61E-09,gain,yes,-0.0000875,0.0000555,-1.578526512,0.11546453,neg,ns,0.12915635,0.016245089,7.950485887,3.49E-14,pos,yes,13.45682203,-0.00020785,0.000558667,-0.372046385,0.710112507,neg,ns,0.574820508,Prox1,Prox1_Intron,1,190149361,190149410,190149361,190149362,50,-,CGAGTCTCTGTGACTTTGATTAATGCTTCCCACGGGACATCTCAGCCTCA,"Intron (Prox1-202/Prox1, intron 3 of 4)",1,190118035,190170714,52680,2,Prox1-202,21304,Prox1-202;Prox1-201;Prox1-203,Prox1;Prox1;Prox1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,59,19130,ENSMUSG00000010175,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17918,cg06580568,0.00000918,0.00000564,1.628329967,0.104470757,gain,ns,-0.0000151,0.00000958,-1.578408661,0.115491589,neg,ns,-0.002222989,0.002807307,-0.791858123,0.429048903,neg,ns,0.367493204,-0.0000209,0.0000965,-0.216795453,0.828510358,neg,ns,0.841706619,Pdzrn4,Pdzrn4_Intron,15,92520983,92521032,92520983,92520984,50,-,CGTCGCACCAGCTCCTACGTGACATTGAGATGGATGAAGCCATTTGTTGG,"Intron (Pdzrn4-202/Pdzrn4, intron 3 of 9)",15,92396881,92771036,374156,1,Pdzrn4-202,124102,Pdzrn4-202;Pdzrn4-203,Pdzrn4;Pdzrn4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,7,239618,ENSMUSG00000036218,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13525,cg27490948,0.00000846,0.00000327,2.587628495,0.010118719,gain,ns,0.00000877,0.00000555,1.578356222,0.115503631,pos,ns,-0.000459709,0.00162715,-0.282524005,0.777730283,neg,ns,0.10917099,0.0000792,0.000056,1.415892223,0.157810985,pos,ns,0.944608262,Gm10172,Gm10172_Intergenic_downstream,7,71165568,71165617,71165616,71165617,50,+,AGCTGAGGCCTTCAGAGTTAACCTGACATTTAACAATAATTACCCTTTCG,Distal Intergenic,7,71332363,71332921,559,2,Gm10172-201,167304,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,31,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25745,cg03586368,-0.00000542,0.00000583,-0.930551611,0.352809636,loss,ns,0.0000156,0.0000099,1.578320282,0.115511884,pos,ns,0.011886806,0.002900295,4.098481269,0.0000532,pos,ns,4.274427751,-0.000392258,0.0000997,-3.93276596,0.000103654,neg,ns,0.87007278,Rergl,Rergl_Intergenic_downstream,6,139278859,139278908,139278907,139278908,50,+,ATGCATACTCAATAACATTAATGGTAATTTCTCATAAAGACACATTATCG,Distal Intergenic,6,139492973,139501976,9004,2,Rergl-201,223068,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,5,632971,ENSMUSG00000092164,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20411,cg20435403,0.0000168,0.00000289,5.821897904,1.45E-08,gain,yes,-0.00000775,0.00000491,-1.578318099,0.115512386,neg,ns,-0.001541567,0.001437768,-1.072194734,0.284466548,neg,ns,0.545968798,0.0000761,0.0000494,1.538715495,0.124893831,pos,ns,0.054436685,Hoxc4,Hoxc4_fiveUTR,15,103034648,103034697,103034648,103034649,50,-,CGCTAGCTAGTAGGAGGGCTTTATGGAGCAGAAAAACGACAAAGCGAGAA,5' UTR,15,103018934,103036405,17472,1,Hoxc4-202,15714,Hoxc4-202;Hoxc4-201,Hoxc4;Hoxc4,0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,91,15423,ENSMUSG00000075394,conserved gene and region,15,103034566,103034693,128,*,128,9,0.53125,1.090909091,0.0703125,0.00000707,CpGisland,TRUE,U3,Pr-B
21862,cg06147467,-0.00000759,0.0000033,-2.29923751,0.022156067,loss,ns,-0.00000885,0.00000561,-1.578305032,0.115515387,neg,ns,-0.000499392,0.001643467,-0.303864816,0.761434736,neg,ns,0.118367315,-0.000140044,0.0000565,-2.47783232,0.013750761,neg,ns,0.95551339,Lmo1,Lmo1_Intergenic_upstream,7,109261970,109262019,109261970,109261971,50,+,CGTGACCTTATTCAATCTTGGGGCTGATCGGGAAATATATTGATTCAATT,Distal Intergenic,7,109138675,109175207,36533,2,Lmo1-202,-86763,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,34,66,109594,ENSMUSG00000036111,mapped to different genes,7,109261896,109261999,104,*,104,9,0.567307692,1.090909091,0.086538462,0.00000128,CpGisland,TRUE,U15,NS
7585,cg26434291,0.0000319,0.0000151,2.118608797,0.034918711,gain,ns,-0.0000404,0.0000256,-1.57822864,0.115532932,neg,ns,0.040399221,0.007496815,5.38885138,0.000000141,pos,ns,6.852008252,-0.001170993,0.000257815,-4.541992581,0.00000799,neg,ns,0.248736446,Zbtb20,Zbtb20_Intron,16,43334514,43334563,43334562,43334563,50,-,GTTTTTCCTTTAAAACCAAGAGCTGGGCAGGCATCCCATTCGACCTGACG,"Intron (Zbtb20-209/Zbtb20, intron 7 of 7)",16,42875881,43463175,587295,1,Zbtb20-209,458633,Zbtb20-209;Zbtb20-211;Zbtb20-217;Zbtb20-218;Zbtb20-204;Zbtb20-215;Zbtb20-201;Zbtb20-203,Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,98,56490,ENSMUSG00000022708,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23115,cg19542597,0.0000204,0.00000679,3.011791029,0.002810881,gain,ns,0.0000182,0.0000115,1.578152628,0.115550392,pos,ns,0.00609083,0.003379297,1.802395377,0.072454439,pos,ns,1.139935001,-0.000110283,0.000116214,-0.948966643,0.343376772,neg,ns,0.901080325,Rnf220,Rnf220_Intron,4,117311890,117311939,117311890,117311891,50,+,CGCTGTGTTCTCTATAATTTTATATTGAGACCTGTGGTCATGACGTGGGT,"Intron (Rnf220-201/Rnf220, intron 2 of 14)",4,117271463,117497052,225590,2,Rnf220-201,185113,Rnf220-201;Rnf220-202;Rnf220-207,Rnf220;Rnf220;Rnf220,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12305,cg23573697,0.0000447,0.0000227,1.974347707,0.049229558,gain,ns,0.0000607,0.0000385,1.578030023,0.115578559,pos,ns,0.033203144,0.011274439,2.944992982,0.003474022,pos,ns,2.459167435,-0.000903606,0.000387727,-2.330521781,0.020419896,neg,ns,0.420324919,Gm18541,Gm18541_Intergenic_upstream,9,63880785,63880834,63880785,63880786,50,+,CGAGTAACACGCTTTTTTAATTTCAGGGGAATCGTTTTCAAATGGGAATC,Distal Intergenic,9,63898265,63898802,538,1,Gm18541-201,-17431,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,13,100417338,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
22645,cg21163974,-0.000110991,0.0000561,-1.977142194,0.048911271,loss,ns,0.000150457,0.0000954,1.577624607,0.115671738,pos,ns,0.008976288,0.027939939,0.321270868,0.748221626,pos,ns,0.125969744,0.002071964,0.000960852,2.156381388,0.031822722,pos,ns,0.725595715,Sox6,Sox6_Intron,7,115564274,115564323,115564274,115564275,50,+,CGTCACTGGAAACAAGAGCCTGATTAGGTTCCCACACAGATATGAATAGA,"Intron (Sox6-210/Sox6, intron 9 of 15)",7,115470872,116031047,560176,2,Sox6-210,466724,Sox6-210;Sox6-201;Sox6-202;Sox6-204;Sox6-205;Sox6-203;Sox6-212;Sox6-206;Sox6-209;Sox6-215;Sox6-214,Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,37,57,20679,ENSMUSG00000051910,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26883,cg24384497,-0.00000994,0.00000708,-1.402828201,0.161668788,loss,ns,0.000019,0.000012,1.577449079,0.115712099,pos,ns,-0.000543283,0.003525609,-0.154096215,0.877634142,neg,ns,0.05668649,0.0000265,0.000121245,0.218360072,0.827292249,pos,ns,0.794292138,Cacna1e,Cacna1e_Exon,1,154443904,154443953,154443952,154443953,50,-,ACCACAAAGTAGACTACATAAAAGATAGACATCTCCATGCGGTTGCTGCG,"Exon (Cacna1e-203/Cacna1e, exon 30 of 47)",1,154390731,154726356,335626,2,Cacna1e-203,282403,Cacna1e-203;Cacna1e-201;Cacna1e-207,Cacna1e;Cacna1e;Cacna1e,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,19,12290,ENSMUSG00000004110,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27645,cg06147822,-0.00000415,0.00000168,-2.469355957,0.014074245,loss,ns,0.0000045,0.00000285,1.57743656,0.115714978,pos,ns,0.002488237,0.000835813,2.977025813,0.003139952,pos,ns,2.503076989,-0.000045,0.0000287,-1.566914853,0.118154766,neg,ns,0.04976571,Gm20721,Gm20721_threeUTR,2,174330371,174330420,174330419,174330420,50,+,ATCGAGAAGCAGCTGCAGAAGGACAAGCAGGTCTACCGGGCCACGCACCG,3' UTR,2,174330319,174346712,16394,2,Gm20721-201,16292,Gm20721-201;Gnas-222;Gnas-211;Gnas-215;Gnas-214;Gnas-201;Gnas-209;Gnas-220;Gnas-223;Gnas-224;Gnas-203;Gnas-212;Gnas-221;Gnas-219;Gnas-227;Gnas-217;Gnas-202;Gnas-218;Gnas-207;Gnas-226;Gnas-208;Gnas-206;Gnas-205,Gm20721;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas,0;0;0;0;0;0;0;0;0;0;0;0;0;2641;2614;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,9,10,,NA,mapped to different genes,2,174329643,174330863,1221,*,1221,154,0.773955774,0.845096629,0.126126126,9.62E-134,CpGisland,TRUE,U1,Pr-A
23686,cg24694549,0.00000835,0.0000179,0.46659378,0.641118267,gain,ns,0.0000479,0.0000304,1.577023392,0.115810027,pos,ns,0.00543507,0.008906337,0.610247532,0.54214494,pos,ns,0.265884591,-0.000126754,0.000306288,-0.413837994,0.679278918,neg,ns,0.664840075,Grip1,Grip1_fiveUTR,10,119819445,119819494,119819493,119819494,50,-,ATTAAGCTTTGTCACTCCCCACTGGGACTACCTTTCTCCTGGTATGTGCG,5' UTR,10,119453830,120075597,621768,1,Grip1-202,365615,Grip1-202;Grip1-201;Grip1-212;Grip1-217;Grip1-218;Grip1-205;Grip1-213;Grip1-214;Grip1-208;Grip1-210;Grip1-215;Grip1-211,Grip1;Grip1;Grip1;Grip1;Grip1;Grip1;Grip1;Grip1;Grip1;Grip1;Grip1;Grip1,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,2,74053,ENSMUSG00000034813,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11161,cg21220963,-0.000000557,0.00000359,-0.15514207,0.876810282,loss,ns,0.00000962,0.0000061,1.576929981,0.115831525,pos,ns,0.003646457,0.001786827,2.040743452,0.042123183,pos,ns,1.375478824,-0.00011326,0.0000614,-1.843151847,0.066261355,neg,ns,0.912165221,Satb2,Satb2_Intron,1,56800883,56800932,56800931,56800932,50,+,CCCCATTTTCTAAATTATGCTTGCCTTCTGTAGTAAAAGTCAGCATAACG,"Intron (Satb2-201/Satb2, intron 9 of 9)",1,56793981,56972502,178522,2,Satb2-201,171570,Satb2-201;Satb2-202;Satb2-205,Satb2;Satb2;Satb2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,33,212712,ENSMUSG00000038331,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4745,cg02911028,-0.00000341,0.00000407,-0.836965976,0.403256435,loss,ns,0.0000109,0.00000692,1.576767873,0.11586884,pos,ns,0.004735405,0.002026666,2.336549734,0.02009942,pos,ns,1.696816477,-0.000146948,0.0000697,-2.108391802,0.035799279,neg,ns,0.929305421,Mecom,Mecom_Intron,3,30412246,30412295,30412246,30412247,50,-,CGGAGGTTAAGTCCTAACCTTGAAAGACTTAGCAGCCATTGAAACACTGC,"Intron (Mecom-212/Mecom, intron 1 of 15)",3,29951299,30509733,558435,2,Mecom-212,97438,Mecom-212;Mecom-213;Mecom-207;Mecom-208;Mecom-211;Mecom-209,Mecom;Mecom;Mecom;Mecom;Mecom;Mecom,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,80,14013,ENSMUSG00000027684,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15612,cg18440438,-0.00000401,0.0000034,-1.178349771,0.239560909,loss,ns,0.00000911,0.00000578,1.576757518,0.115871224,pos,ns,0.004869035,0.00169192,2.877816681,0.004282459,pos,ns,2.368306783,-0.000154098,0.0000582,-2.648410562,0.008501097,neg,ns,0.941391823,Nfib,Nfib_threeUTR,4,82295056,82295105,82295056,82295057,50,-,CGGCAACTATACACAGCCATGATATGCTTTATAAATGTGAGATAAAGGTA,3' UTR,4,82290173,82505308,215136,2,Nfib-201,210203,Nfib-201;Nfib-203;Nfib-202;Nfib-205;Nfib-206;Nfib-204,Nfib;Nfib;Nfib;Nfib;Nfib;Nfib,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,11,66,18028,ENSMUSG00000008575,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11172,cg05475048,-0.00000526,0.00000815,-0.645202664,0.519273081,loss,ns,0.0000218,0.0000139,1.576724257,0.115878882,pos,ns,0.00311045,0.004057767,0.766542296,0.443937025,pos,ns,0.352678633,-0.000379207,0.000139546,-2.717426452,0.006949056,neg,ns,0.522085125,Trpc7,Trpc7_Exon,13,56831399,56831448,56831447,56831448,50,-,TTTCATACCACATGGTAAGCAATTGCTGCTGACAGTTAGGATGAGCAACG,"Exon (Trpc7-201/Trpc7, exon 4 of 12)",13,56773113,56895737,122625,2,Trpc7-201,64289,Trpc7-201;Trpc7-202;Trpc7-203;Trpc7-204;Trpc7-205;Trpc7-206;Trpc7-208;Trpc7-207,Trpc7;Trpc7;Trpc7;Trpc7;Trpc7;Trpc7;Trpc7;Trpc7,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,5,26946,ENSMUSG00000021541,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1599,cg22181687,-0.00000421,0.00000213,-1.975290532,0.049121977,loss,ns,0.00000571,0.00000362,1.576707043,0.115882845,pos,ns,-0.000587098,0.001060387,-0.553664417,0.580207644,neg,ns,0.236416554,-0.0000335,0.0000365,-0.917724033,0.359476801,neg,ns,0.946008129,Zfp521,Zfp521_Intron,18,13812034,13812083,13812034,13812035,50,-,CGTTAATATCATGACAGCTGAGGAGAGATGACCTGGCCCACTTCTCATCT,"Intron (Zfp521-201/Zfp521, intron 5 of 7)",18,13687013,13972787,285775,2,Zfp521-201,160704,Zfp521-201;Zfp521-205;Zfp521-204;Zfp521-206,Zfp521;Zfp521;Zfp521;Zfp521,0;0;0;31749,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,81,225207,ENSMUSG00000024420,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23116,cg11451100,0.0000857,0.0000135,6.368419449,6.88E-10,gain,yes,-0.000036,0.0000229,-1.576664138,0.115892724,neg,ns,0.038349086,0.006697668,5.725737169,2.43E-08,pos,ns,7.613840492,-0.000861837,0.000230332,-3.741713583,0.000217735,neg,ns,0.410646678,Rnf220,Rnf220_Intron,4,117311933,117311982,117311933,117311934,50,-,CGTGGGTTTTACTGCACTAACGACATGGCCTGCCCAGGTTTAATGACAAA,"Intron (Rnf220-201/Rnf220, intron 2 of 14)",4,117271463,117497052,225590,2,Rnf220-201,185070,Rnf220-201;Rnf220-202;Rnf220-207,Rnf220;Rnf220;Rnf220,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22454,cg22714867,0.00000386,0.00000294,1.312396744,0.190357164,gain,ns,0.00000787,0.00000499,1.576655663,0.115894675,pos,ns,0.004529188,0.001462547,3.096781309,0.002135196,pos,ns,2.670562216,-0.000127247,0.0000503,-2.529918193,0.01190398,neg,ns,0.936574807,Wwox,Wwox_Intron,8,114604677,114604726,114604725,114604726,50,-,ACTTTGAATTTTAAATTACACACATAATTCAAAGGTAATGTAACTTGCCG,"Intron (Wwox-201/Wwox, intron 5 of 8)",8,114439655,115352708,913054,1,Wwox-201,165022,Wwox-201;Wwox-207;Wwox-203;Wwox-206,Wwox;Wwox;Wwox;Wwox,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,32,32,80707,ENSMUSG00000004637,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24740,cg25111516,-0.00000544,0.00000237,-2.296850568,0.022293682,loss,ns,0.00000634,0.00000402,1.576652909,0.115895309,pos,ns,0.003419646,0.001178599,2.901450017,0.003980305,pos,ns,2.400083667,-0.00011193,0.0000405,-2.7615325,0.006096168,neg,ns,0.952145761,Baz2a,Baz2a_Exon,10,128116017,128116066,128116065,128116066,50,+,TAGGGGTGTGACCTGGCGGCAGGGCCCATGTGCTTCTCTGGCAGGTGGCG,"Exon (Baz2a-204/Baz2a, exon 9 of 11)",10,128091577,128116757,25181,1,Baz2a-204,24440,Baz2a-204;Baz2a-209;Baz2a-203;Baz2a-206;Baz2a-208;Baz2a-205;Baz2a-201;Baz2a-202;Baz2a-207,Baz2a;Baz2a;Baz2a;Baz2a;Baz2a;Baz2a;Baz2a;Baz2a;Baz2a,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,7,116848,ENSMUSG00000040054,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21346,cg12214647,-0.0000199,0.00000523,-3.811164233,0.00016682,loss,ns,-0.000014,0.00000889,-1.57645084,0.115941845,neg,ns,-0.007187661,0.002604183,-2.760044595,0.006123321,neg,ns,2.213012974,0.0000936,0.0000896,1.044877114,0.29689384,pos,ns,0.89606911,Cacna2d2,Cacna2d2_Exon,9,107443957,107444006,107444005,107444006,50,-,CGCTATTTAAAATATTTATCTCTCCACGCCGCAGGAGCAGCTCTGGAGCG,"Exon (Gm17118-201/Gm17118-201, exon 2 of 2)",9,107399612,107529343,129732,1,Cacna2d2-201,44345,Cacna2d2-201;Cacna2d2-205;Cacna2d2-202;Cacna2d2-203;Cacna2d2-204;Cacna2d2-208,Cacna2d2;Cacna2d2;Cacna2d2;Cacna2d2;Cacna2d2;Cacna2d2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,18,56808,ENSMUSG00000010066,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11912,cg15265788,0.000125478,0.0000155,8.107094409,1.21E-14,gain,yes,-0.0000414,0.0000263,-1.576240154,0.115990381,neg,ns,0.017635169,0.007703354,2.289284566,0.022734835,pos,ns,1.643308194,-0.000425231,0.000264918,-1.605145433,0.109479996,neg,ns,0.144853697,Tank,Tank_Intergenic_downstream,2,61656460,61656509,61656508,61656509,50,-,CTCATTTGAGAAGAGCAGCATTTGAGGCAGCAGCGTTCGCCTGCTGAACG,Downstream (2-3kb),2,61643831,61649977,6147,1,Tank-211,12678,Tank-205;Tank-201;Tank-206;Tank-203;Tank-204;Tank-202;Tank-208,Tank;Tank;Tank;Tank;Tank;Tank;Tank,0;0;0;0;0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,16,17,21353,ENSMUSG00000064289,mapped to different genes,2,61656429,61656917,489,*,489,60,0.707566462,0.985887097,0.122699387,1.21E-51,CpGisland,TRUE,U3,Pr-B
6303,cg06018714,-0.00000554,0.000011,-0.503487943,0.61497883,loss,ns,0.0000295,0.0000187,1.576226782,0.115993462,pos,ns,0.007281065,0.005475646,1.329717869,0.184588835,pos,ns,0.733794571,-0.000339927,0.000188307,-1.805174147,0.072017583,neg,ns,0.687466419,Tshz3,Tshz3_Intergenic_downstream,7,36778695,36778744,36778695,36778696,50,-,CGATTTAATTTGTGCATGTGTTTGAGTTCTTCTGCTTGGCTAGGCTAACA,Distal Intergenic,7,36698217,36702113,3897,1,Tshz3-202,80527,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,21,58,243931,ENSMUSG00000021217,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3348,cg18786067,-0.0000121,0.00000317,-3.828013062,0.000156288,loss,ns,0.00000849,0.00000538,1.576158902,0.116009103,pos,ns,0.000166722,0.001577307,0.105700615,0.915888255,pos,ns,0.03815751,-0.00000509,0.0000542,-0.093858215,0.92528242,neg,ns,0.04621486,Mapre2,Mapre2_fiveUTR,18,23804098,23804147,23804098,23804099,50,+,CGCCAATGCCTGGGCCGACCCAAACCCTGTCCCCAAATGGCGAGAACAAC,Promoter (<=1kb),18,23804103,23890931,86829,1,Mapre2-208,0,Mapre2-209;Mapre2-207;Mapre2-203;Mapre2-202;Mapre2-201;Mapre2-205;Mapre2-208,Mapre2;Mapre2;Mapre2;Mapre2;Mapre2;Mapre2;Mapre2,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,5,212307,ENSMUSG00000024277,conserved gene and region,18,23803760,23804330,571,*,571,49,0.651488617,0.816380719,0.085814361,4.88E-34,CpGisland,TRUE,U1,Pr-A
12854,cg25510585,0.0000679,0.00000906,7.492564185,7.11E-13,gain,yes,-0.0000243,0.0000154,-1.576157142,0.116009509,neg,ns,0.016491581,0.00450849,3.657894541,0.000298713,pos,ns,3.524745924,-0.000658766,0.000155047,-4.248823603,0.0000285,neg,ns,0.149609783,Ebf2,Ebf2_Intron,14,67344932,67344981,67344932,67344933,50,-,CGCTGGCATTCCACCCTGACATCTGTTCAGCTTTATTGATGCGGCCCTGG,"Intron (Ebf2-201/Ebf2, intron 7 of 16)",14,67233292,67429777,196486,1,Ebf2-201,111640,Ebf2-201;Ebf2-203;Ebf2-202,Ebf2;Ebf2;Ebf2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,21,13592,ENSMUSG00000022053,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14843,cg21330564,-0.00000159,0.00000226,-0.703867004,0.482043958,loss,ns,0.00000605,0.00000384,1.575918535,0.116064503,pos,ns,0.000284423,0.001125028,0.252814599,0.800579044,pos,ns,0.096595782,-0.0000923,0.0000387,-2.385733854,0.017645261,neg,ns,0.957512344,Gm45288,Gm45288_Intergenic_upstream,8,77949897,77949946,77949897,77949898,50,+,CGACCACCTAATCACTTGTGAAAGGATGTGCTGGAGTTTGCCTTCACTCA,Distal Intergenic,8,78107960,78108110,151,1,Gm45288-201,-158014,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,7,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7597,cg04483213,-0.0000017,0.000000912,-1.860441611,0.063769856,loss,ns,0.00000244,0.00000155,1.575822463,0.116086652,pos,ns,0.001202639,0.000453976,2.649122909,0.008483602,pos,ns,2.071419689,-0.000019,0.0000156,-1.213980373,0.225679253,neg,ns,0.976335336,Zbtb20,Zbtb20_Intron,16,43371633,43371682,43371633,43371634,50,+,CGTATCAGAAGGCTGTAATTTCATTTAGGGGTTCTATTGACATCGTAAAC,"Intron (Zbtb20-209/Zbtb20, intron 7 of 7)",16,42875881,43463175,587295,1,Zbtb20-209,495752,Zbtb20-209;Zbtb20-211;Zbtb20-217;Zbtb20-218;Zbtb20-204;Zbtb20-215;Zbtb20-201;Zbtb20-203;Zbtb20-214;Zbtb20-213;Zbtb20-219;Zbtb20-216,Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,98,56490,ENSMUSG00000022708,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26438,cg04168924,0.0000136,0.00000318,4.288298473,0.0000241,gain,ns,-0.00000851,0.0000054,-1.575797758,0.116092348,neg,ns,0.000686968,0.001582954,0.433978648,0.664605819,pos,ns,0.177435861,0.000046,0.0000544,0.845803181,0.398314925,pos,ns,0.928766651,Clcn6,Clcn6_Exon,4,148017605,148017654,148017605,148017606,50,+,CGAAGAAACCCAAATCCATAGCTGTCCAGAGATGACATTTTTTATCAGAG,"Exon (Clcn6-205/Clcn6, exon 12 of 23)",4,148004259,148038821,34563,2,Clcn6-205,21167,Clcn6-205;Clcn6-201;Clcn6-202,Clcn6;Clcn6;Clcn6,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,26372,ENSMUSG00000029016,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20238,cg16253259,-0.0000099,0.00000534,-1.855233056,0.064512104,loss,ns,0.0000143,0.00000906,1.575633481,0.11613023,pos,ns,-0.002447093,0.002655447,-0.921537238,0.35748662,neg,ns,0.446740208,0.0000976,0.0000913,1.06873835,0.286019081,pos,ns,0.080136851,Hoxc10,Hoxc10_Promoter,15,102966635,102966684,102966635,102966636,50,-,CGTCACGGCCGTCTGAATCATCAAGGCCATTTTCAAATCCCATTGGTCTA,Promoter (<=1kb),15,102966796,102971893,5098,1,Hoxc10-201,-161,Hoxc10-201;Hoxc5-202,Hoxc10;Hoxc5,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,8,21,209448,ENSMUSG00000022484,mapped to different genes,15,102966502,102966645,144,*,144,15,0.694444444,0.876623377,0.104166667,4.95E-12,CpGisland,TRUE,NA,NRS
9977,cg07720974,-0.000014,0.00000714,-1.955541359,0.051417298,loss,ns,-0.0000191,0.0000121,-1.575540557,0.116151662,neg,ns,-0.007258445,0.003554302,-2.042157248,0.041981883,neg,ns,1.376938085,-0.000181131,0.000122232,-1.481856431,0.139394261,neg,ns,0.871158533,Hectd1,Hectd1_Exon,12,51769076,51769125,51769076,51769077,50,+,CGTTTTGGTCGAACCCAAGCTGATGTCGCTGCTACTGGCCACGCTACACA,"Exon (Hectd1-201/Hectd1, exon 25 of 43)",12,51743722,51829536,85815,2,Hectd1-201,60411,Hectd1-201;Hectd1-202;Hectd1-204,Hectd1;Hectd1;Hectd1,0;0;-3845,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,19,19,207304,ENSMUSG00000035247,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2028,cg21244955,-0.000000316,0.00000089,-0.355108945,0.722749455,loss,ns,-0.00000238,0.00000151,-1.575270804,0.116213897,neg,ns,0.000037,0.00044298,0.083591674,0.93343504,pos,ns,0.0299159,-0.0000106,0.0000152,-0.694041701,0.488175814,neg,ns,0.972066376,Pi4ka,Pi4ka_Exon,16,17389345,17389394,17389393,17389394,50,+,AGATCAGATTCAATCAGAAAAATGCCCAATGCAATCACTGCATCTCTCCG,"Exon (Pi4ka-201/Pi4ka, exon 2 of 55)",16,17280351,17406314,125964,2,Pi4ka-201,16920,Pi4ka-201;Pi4ka-209;Pi4ka-202,Pi4ka;Pi4ka;Pi4ka,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,224020,ENSMUSG00000041720,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19159,cg21503553,-0.0000332,0.00000797,-4.171579059,0.0000393,loss,ns,0.0000213,0.0000135,1.575195096,0.116231368,pos,ns,-0.002082539,0.003966731,-0.525001322,0.599957529,neg,ns,0.221879492,-0.000159248,0.000136416,-1.167376252,0.243955582,neg,ns,0.812635692,Mrps22,Mrps22_Intergenic_upstream,9,98708139,98708188,98708139,98708140,50,+,CGAAGCCCCATCTTGAGCCAATTATTGGTGTCATCTTGAGCCAATTTAAT,Distal Intergenic,9,98588730,98601660,12931,2,Mrps22-201,-106479,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,6,64655,ENSMUSG00000032459,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15355,cg19669132,0.0000681,0.0000111,6.131941966,2.64E-09,gain,yes,-0.0000297,0.0000189,-1.575154113,0.116240826,neg,ns,0.000891825,0.005531117,0.161237777,0.872011157,pos,ns,0.059477958,-0.000210989,0.000190215,-1.109214128,0.268197562,neg,ns,0.261973598,Cdk5r1,Cdk5r1_Exon,11,80477587,80477636,80477635,80477636,50,-,TATACGGCCGTACAGAACAGCAAGAACGCCAAGGACAAGAACCTGAAGCG,Promoter (<=1kb),11,80477023,80481184,4162,1,Cdk5r1-201,564,Cdk5r1-201;Cdk5r1-202;Myo1d-201;Psmd11-201;Psmd11-213,Cdk5r1;Cdk5r1;Myo1d;Psmd11;Psmd11,0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,12569,ENSMUSG00000048895,conserved gene and region,11,80476521,80477830,1310,*,1310,168,0.726717557,0.971604153,0.128244275,2.97E-147,CpGisland,TRUE,U4,Pr-F
4470,cg02588235,0.00000237,0.00000141,1.675619371,0.094821051,gain,ns,0.00000378,0.0000024,1.575088962,0.116255864,pos,ns,0.002569952,0.000702555,3.658005401,0.000298589,pos,ns,3.524925897,-0.0000488,0.0000242,-2.018635719,0.044385836,neg,ns,0.032086182,Lep,Lep_Intergenic_upstream,6,28981406,28981455,28981454,28981455,50,-,TATTTCGGGCGAGCCAGTGTTTCCAGGGGAAACCTAATGACGCAATGACG,Distal Intergenic,6,29060220,29073877,13658,1,Lep-201,-78814,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,4,16846,ENSMUSG00000059201,mapped to different genes,6,28981385,28981694,310,*,310,26,0.651612903,0.79393223,0.083870968,4.58E-18,CpGisland,TRUE,U3,Pr-B
13216,cg23146717,0.00000972,0.00000517,1.880481328,0.06097988,gain,ns,0.0000138,0.00000878,1.575025884,0.116270425,pos,ns,0.002494181,0.002572694,0.969482034,0.333060524,pos,ns,0.477476839,-0.00000449,0.0000885,-0.050756127,0.959552539,neg,ns,0.071140889,Foxb1,Foxb1_Promoter,9,69769784,69769833,69769832,69769833,50,-,ATTTTAATTAAGTCTATGGCGATTTACTTTCCTCTGAGATCTATTCCACG,Promoter (8-9kb),9,69757710,69760940,3231,2,Foxb1-201,-8893,NA,NA,NA,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,8,21,64290,ENSMUSG00000059246,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
22478,cg23742552,-0.0000223,0.0000117,-1.909642316,0.057102121,loss,ns,-0.0000312,0.0000198,-1.574969086,0.116283537,neg,ns,-0.001103427,0.005812218,-0.189846068,0.849554004,neg,ns,0.070809009,-0.000347072,0.000199882,-1.736389267,0.083488491,neg,ns,0.835480997,Gm12830,Gm12830_Intergenic_upstream,4,114795935,114795984,114795983,114795984,50,-,TTAAGAATGTTTCTTTTCCTTCGGAACACGGCTGATAATTTATTTTTCCG,Distal Intergenic,4,114821722,114856166,34445,1,Gm12830-201,-25787,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,12,26,433746,ENSMUSG00000055198,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2481,cg06834901,-0.00000345,0.00000147,-2.356727892,0.01905852,loss,ns,0.00000392,0.00000249,1.574960397,0.116285543,pos,ns,0.001433,0.000729611,1.964061772,0.05041619,pos,ns,1.297429977,-0.0000496,0.0000251,-1.976728825,0.048958243,neg,ns,0.051273433,Spred2,Spred2_fiveUTR,11,19924342,19924391,19924342,19924343,50,-,CGCAAGTAGGAAGCTTTTTGCACTCCACCACCTCTGGCCGCTGGGAAGAC,Promoter (<=1kb),11,19924375,20024026,99652,1,Spred2-202,0,Spred2-202;Spred2-201,Spred2;Spred2,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,8,13,114716,ENSMUSG00000045671,conserved gene and region,11,19924342,19924793,452,*,452,44,0.703539823,0.817763158,0.097345133,3.79E-33,CpGisland,TRUE,U1,Pr-A
23998,cg23182787,0.00000594,0.00000587,1.012420631,0.31212652,gain,ns,-0.0000157,0.00000997,-1.574944911,0.116289118,neg,ns,0.013127621,0.002921754,4.493061359,0.00000992,pos,ns,5.003345944,-0.00017868,0.000100479,-1.778282463,0.07633753,neg,ns,0.903101583,Atxn2,Atxn2_threeUTR,5,121813362,121813411,121813362,121813363,50,-,CGTAAAAGAGCTCTCTGTTTCAGGCTCATGTACAGTCAGGAATGGTTCCT,3' UTR,5,121711609,121814950,103342,1,Atxn2-201,101753,Atxn2-201;Atxn2-209;Atxn2-214;Atxn2-215;Atxn2-217;Atxn2-210;Atxn2-203;Atxn2-206;Atxn2-212;Atxn2-211;Atxn2-205;Atxn2-218;Sh2b3-205;Sh2b3-202;Sh2b3-208;Sh2b3-204;Sh2b3-201;Sh2b3-203,Atxn2;Atxn2;Atxn2;Atxn2;Atxn2;Atxn2;Atxn2;Atxn2;Atxn2;Atxn2;Atxn2;Atxn2;Sh2b3;Sh2b3;Sh2b3;Sh2b3;Sh2b3;Sh2b3,0;0;0;11616;11251;0;0;0;2698;2397;0;0;23414;23448;15330;22693;23439;23406,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,16,20239,ENSMUSG00000042605,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6128,cg07974862,0.000122164,0.0000106,11.57782538,5.28E-26,gain,yes,-0.0000282,0.0000179,-1.574921006,0.116294637,neg,ns,0.010322774,0.005251623,1.965635142,0.050233133,pos,ns,1.29900973,-0.000259682,0.000180603,-1.437862279,0.151481813,neg,ns,0.522399445,Nrg2,Nrg2_Intron,18,36107791,36107840,36107839,36107840,50,+,ACTAGCCTGTCTGGGCTGGAAGCAGGGAACCTGATATTTACATACCTCCG,"Intron (4930471G03Rik-201/4930471G03Rik-201, intron 2 of 2)",18,36017652,36197380,179729,2,Nrg2-203,89540,Nrg2-203;Nrg2-201,Nrg2;Nrg2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,20,100042150,ENSMUSG00000060275,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15886,cg19450595,0.0000357,0.00000772,4.618357767,0.00000568,gain,ns,-0.0000207,0.0000131,-1.574846728,0.116311788,neg,ns,-0.012609461,0.003844454,-3.279909179,0.00115664,neg,ns,2.936801873,0.000234717,0.00013221,1.775327195,0.076824961,pos,ns,0.829105852,Ccdc171,Ccdc171_threeUTR,4,83742970,83743019,83743018,83743019,50,-,TCTCTGCGTCAGCTCAATAGACATCTTACCCAGCTGGAGCAGGACAAGCG,3' UTR,4,83525545,83864670,339126,1,Ccdc171-201,217425,Ccdc171-201;Ccdc171-206;Ccdc171-203;Ccdc171-205,Ccdc171;Ccdc171;Ccdc171;Ccdc171,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,9,320226,ENSMUSG00000052407,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15094,cg26042044,0.0000311,0.00000602,5.167658557,0.000000425,gain,yes,-0.0000161,0.0000102,-1.57466343,0.11635412,neg,ns,-0.006736616,0.002998212,-2.246877982,0.025351216,neg,ns,1.596001206,0.000189176,0.000103108,1.834734155,0.067503227,pos,ns,0.774365719,Plekhh1,Plekhh1_Exon,12,79078997,79079046,79078997,79078998,50,+,CGTTTGGTGGCTGCAGGGATGACTTCATGCTTGTGATTAGATCTATCCCA,"Exon (Plekhh1-201/Plekhh1, exon 28 of 29)",12,79029163,79081655,52493,1,Plekhh1-201,49834,Pigh-201;Pigh-203;Plekhh1-201;Plekhh1-204;Plekhh1-203,Pigh;Pigh;Plekhh1;Plekhh1;Plekhh1,10605;10599;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,211945,ENSMUSG00000060716,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7303,cg26064402,0.00001,0.0000102,0.982261453,0.326737033,gain,ns,0.0000273,0.0000173,1.574587369,0.116371689,pos,ns,-0.003917828,0.005070185,-0.772719043,0.440277417,neg,ns,0.35627359,0.0000143,0.000174363,0.082184274,0.934553217,pos,ns,0.488938216,Gm8176,Gm8176_Intergenic_upstream,1,42233426,42233475,42233426,42233427,50,-,CGCAGAGAGGAGCCTATTACCACTACTAGGCTGAAATAGATCTAATCAAC,Distal Intergenic,1,42179290,42180388,1099,2,Gm8176-201,-53087,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,13,17,666582,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22088,cg22181118,-0.0000043,0.00000361,-1.192473524,0.233987597,loss,ns,0.00000965,0.00000613,1.574525159,0.116386061,pos,ns,0.000152535,0.001795085,0.084973499,0.93233731,pos,ns,0.030426936,-0.0000345,0.0000617,-0.559012305,0.576556922,neg,ns,0.897197118,Ampd3,Ampd3_Exon,7,110804936,110804985,110804984,110804985,50,-,TACTACCTGTACTACATGTATGCCAACATCATGGTGCTCAACAACCTCCG,"Exon (Ampd3-206/Ampd3, exon 11 of 15)",7,110768206,110811919,43714,1,Ampd3-206,36730,Ampd3-206;Ampd3-208;Ampd3-201;Rnf141-202;Rnf141-206,Ampd3;Ampd3;Ampd3;Rnf141;Rnf141,0;0;0;-3337;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,11717,ENSMUSG00000005686,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5069,cg17856771,-0.0000035,0.00000297,-1.176338075,0.240362325,loss,ns,0.00000795,0.00000505,1.574283582,0.116441883,pos,ns,0.003942479,0.001479761,2.664267126,0.008119245,pos,ns,2.090484365,-0.000116208,0.0000509,-2.283566825,0.023073259,neg,ns,0.941079808,Sgms1,Sgms1_threeUTR,19,32142824,32142873,32142824,32142825,50,+,CGTGCCAACTATGCAGAAAAATCTTCTGCTAATAATAGACCTAGAAAAAG,3' UTR,19,32122727,32388512,265786,2,Sgms1-201,245639,Sgms1-201;Sgms1-212;Sgms1-209;Sgms1-215;Sgms1-214;Sgms1-206,Sgms1;Sgms1;Sgms1;Sgms1;Sgms1;Sgms1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,8,208449,ENSMUSG00000040451,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10644,cg08936683,-8.87E-08,0.00000908,-0.009773418,0.992208352,loss,ns,0.0000243,0.0000154,1.574026339,0.116501348,pos,ns,0.01373617,0.004518839,3.03975643,0.002569478,pos,ns,2.590155048,-0.000653438,0.000155402,-4.204812566,0.0000342,neg,ns,0.805974958,Snx6,Snx6_Exon,12,54783422,54783471,54783470,54783471,50,+,TCATTTTCAACAAAGGAATCATGAAGCCAGATAAATTCCTCATGTTGCCG,"Exon (Snx6-201/Snx6, exon 4 of 14)",12,54746349,54795703,49355,2,Snx6-201,12232,Snx6-201;Snx6-204;Snx6-207;Snx6-202;Snx6-205,Snx6;Snx6;Snx6;Snx6;Snx6,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,72183,ENSMUSG00000005656,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4043,cg01740606,-0.0000139,0.00000528,-2.632129333,0.008909892,loss,ns,-0.0000141,0.00000897,-1.573787518,0.116556576,neg,ns,-0.009316546,0.002629311,-3.543341585,0.000455901,neg,ns,3.34112931,0.000263816,0.0000904,2.917620045,0.003784917,pos,ns,0.859696428,Dipk1b,Dipk1b_Exon,2,26636117,26636166,26636165,26636166,50,+,GAGGCAGTGCAAGGGCGACCTCATCCAGCCCAACCTGGCCAAGGTGTGCG,"Exon (Dipk1b-201/Dipk1b, exon 5 of 5)",2,26628457,26636497,8041,1,Dipk1b-201,7660,Dipk1b-201;Dipk1b-203;Dipk1b-202;Gm20532-201,Dipk1b;Dipk1b;Dipk1b;Gm20532,0;7623;1914;49478,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,56279,ENSMUSG00000036186,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8774,cg11115159,0.0000221,0.0000092,2.406831287,0.016676131,gain,ns,0.0000246,0.0000156,1.573639447,0.116590828,pos,ns,0.008882313,0.004578513,1.939999639,0.053286449,pos,ns,1.27338322,-0.000248459,0.000157455,-1.577969431,0.115592482,neg,ns,0.678579301,Fgf8,Fgf8_Intron,19,45737793,45737842,45737793,45737794,50,+,CGAGGGGCTGGGCCTGCGGCTTACTGAACATTCCAAATGCTGGTACCATG,"Intron (Fgf8-201/Fgf8, intron 5 of 5)",19,45736798,45742874,6077,2,Fgf8-201,5032,Fgf8-201;Fgf8-206;Fgf8-202;Fgf8-205;Fgf8-203;Fgf8-204,Fgf8;Fgf8;Fgf8;Fgf8;Fgf8;Fgf8,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,18,14179,ENSMUSG00000025219,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
7410,cg22502858,-0.00000276,0.00000459,-0.602574159,0.54723254,loss,ns,-0.0000123,0.0000078,-1.57359364,0.116601425,neg,ns,-0.005931326,0.002283699,-2.597244958,0.009845718,neg,ns,2.00675261,0.000114488,0.0000785,1.457770209,0.145916181,pos,ns,0.840018467,Tcerg1,Tcerg1_threeUTR,18,42574219,42574268,42574219,42574220,50,-,CGCAGACTGAAGTCCTCTGTTCATCCACAGAACAGGTACAGCACGGGCAA,3' UTR,18,42511487,42575793,64307,1,Tcerg1-209,62732,Gpr151-201;Tcerg1-209;Tcerg1-201;Tcerg1-202;Tcerg1-207,Gpr151;Tcerg1;Tcerg1;Tcerg1;Tcerg1,5384;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,12,56070,ENSMUSG00000024498,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27276,cg09697973,0.0000388,0.00000909,4.272018448,0.0000258,gain,ns,-0.0000243,0.0000154,-1.573460438,0.116632247,neg,ns,0.011492059,0.004522647,2.541003059,0.011540728,pos,ns,1.937766799,-0.000391157,0.000155533,-2.5149398,0.012410995,neg,ns,0.138928541,Srsf6,Srsf6_threeUTR,2,162932920,162932969,162932968,162932969,50,-,GGCTGACCTTACCGGAAGCCATGACGACAGCAGCCTTTTGCCATTAGACG,3' UTR,2,162931528,162935208,3681,1,Srsf6-204,1392,Srsf6-204;Srsf6-203;Srsf6-201;Srsf6-202,Srsf6;Srsf6;Srsf6;Srsf6,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,4,67996,ENSMUSG00000016921,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U4,Pr-F
19847,cg14753817,0.000000625,0.0000132,0.047498832,0.962146246,gain,ns,0.0000351,0.0000223,1.573292154,0.116671195,pos,ns,0.000920643,0.006545247,0.140658273,0.888231262,pos,ns,0.051473945,0.000553775,0.00022509,2.460231525,0.014429986,pos,ns,0.66374161,Nlgn3,Nlgn3_Exon,X,101307034,101307083,101307082,101307083,50,-,TCTGTTCTGTGCTGTTGTGTCTCCCCGTGTCTGGTCCCCAGGATCCGGCG,"Exon (Gm21986-201/Gm21986-201, exon 7 of 11)",20,101299168,101325963,26796,1,Nlgn3-202,7866,Nlgn3-202;Nlgn3-203;Nlgn3-206;Nlgn3-201;Nlgn3-205,Nlgn3;Nlgn3;Nlgn3;Nlgn3;Nlgn3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,16,245537,ENSMUSG00000031302,conserved gene and region,X,101307059,101307160,102,*,102,9,0.607843137,1.092857143,0.088235294,0.00000109,CpGisland,TRUE,U11,Tr-P
1974,cg06854993,-0.00000115,0.00000664,-0.173545144,0.862336212,loss,ns,0.0000178,0.0000113,1.573187041,0.116695528,pos,ns,-0.001382865,0.003306579,-0.418216201,0.676078612,neg,ns,0.170002803,0.000184858,0.000113713,1.625653248,0.105039578,pos,ns,0.861528225,Tfec,Tfec_Intergenic_downstream,6,16727683,16727732,16727683,16727684,50,-,CGGTGATGGAACAGTGTCATTTTCAACACTCTCGAGAATCCAAGAGGCTA,Distal Intergenic,6,16834692,16835263,572,2,Tfec-204,107580,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,19,23,21426,ENSMUSG00000029553,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4556,cg24901230,-0.0000606,0.00000858,-7.062333197,1.08E-11,loss,yes,0.0000229,0.0000146,1.573152527,0.116703519,pos,ns,0.018374552,0.004271121,4.302044644,0.0000227,pos,ns,4.643779385,-0.000718005,0.000146883,-4.888261071,0.00000164,neg,yes,0.789186742,9930021J03Rik,9930021J03Rik_Exon,19,29735157,29735206,29735157,29735158,50,-,CGATTTTTGTGATTAATTCCCTGAGTTCATCAAGATTAGTGCAAATAAGC,"Exon (9930021J03Rik-201/9930021J03Rik, exon 5 of 8)",19,29714402,29805507,91106,2,9930021J03Rik-201,70301,9930021J03Rik-201;9930021J03Rik-202;9930021J03Rik-204;9930021J03Rik-203,9930021J03Rik;9930021J03Rik;9930021J03Rik;9930021J03Rik,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,240613,ENSMUSG00000046138,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
665,cg12903213,-0.0000545,0.00000912,-5.978713661,6.18E-09,loss,yes,0.0000244,0.0000155,1.573082764,0.116719672,pos,ns,-0.007082169,0.004538996,-1.560294344,0.119710605,neg,ns,0.921867374,0.000189054,0.000156096,1.211144588,0.226762475,pos,ns,0.250515827,Gm11794,Gm11794_Intergenic_downstream,4,7596283,7596332,7596283,7596284,50,-,CGTTTTCAGCCTTCACAGCAAGATTTGGTTTGTCAGGAAATGGTGTGGGA,Distal Intergenic,4,7763264,7763500,237,2,Gm11794-201,167217,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,5,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12020,cg10186601,-0.000063,0.00000852,-7.391540024,1.36E-12,loss,yes,0.0000228,0.0000145,1.572824419,0.116779504,pos,ns,0.009298618,0.004240677,2.192720361,0.029070413,pos,ns,1.536548803,-0.000506938,0.000145837,-3.476070263,0.000581438,neg,ns,0.789982441,Gm49859,Gm49859_Intergenic_downstream,17,62369332,62369381,62369332,62369333,50,+,CGCTGCAGTATGTCATATTCCATCAGGAGCTACTGTGCAAATAACATATT,Distal Intergenic,17,61872375,61872654,280,1,Gm49859-201,496957,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18304,cg08212459,0.000120232,0.0000107,11.23338894,8.58E-25,gain,yes,-0.0000286,0.0000182,-1.572673456,0.116814478,neg,ns,0.019367198,0.005327029,3.635647353,0.00032455,pos,ns,3.488718171,-0.000193216,0.000183196,-1.054695738,0.292385808,neg,ns,0.249850646,Gm48316,Gm48316_Intergenic_upstream,13,94707015,94707064,94707063,94707064,50,-,TTTCTCAACAAGACAACCATTGACACTGGATGGATGGGGCTAATCTGGCG,Distal Intergenic,13,94752270,94752593,324,1,Gm48316-201,-45255,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,36,42,,NA,mapped to different genes,13,94707063,94707220,158,*,158,11,0.5,1.114102564,0.069620253,0.000000471,CpGisland,TRUE,U13,Hc-P
222,cg09980522,0.0000071,0.0000098,0.723885514,0.469681927,gain,ns,-0.0000262,0.0000167,-1.572538571,0.116845734,neg,ns,-0.008461129,0.004879986,-1.733842817,0.083940172,neg,ns,1.076030147,0.000307586,0.000167822,1.832806631,0.067790289,pos,ns,0.140802765,Gria4,Gria4_Exon,9,4795196,4795245,4795196,4795197,50,+,CGCTGCTCGGAAAGGCTCCCATGGCGAGTCCCCAAAATCCAGAAAATAAC,Promoter (<=1kb),9,4417896,4796142,378247,2,Gria4-202,897,Gria4-202;Gria4-204;Gria4-201;Gria4-203,Gria4;Gria4;Gria4;Gria4,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,16,18,14802,ENSMUSG00000025892,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8390,cg09908759,-0.00000876,0.00000523,-1.675489415,0.094846551,loss,ns,0.000014,0.00000888,1.57251792,0.11685052,pos,ns,0.006353897,0.002602247,2.441696222,0.015177257,pos,ns,1.818806718,-0.000208934,0.0000895,-2.334688048,0.020197922,neg,ns,0.859450009,Zeb2,Zeb2_Intron,2,45083258,45083307,45083258,45083259,50,+,CGTTTACATAGGAACACCTGCTTAGCATGATAGCAGATGTCAGTCAGTAA,"Intron (Zeb2-212/Zeb2, intron 3 of 10)",2,44983632,45117395,133764,2,Zeb2-212,34088,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23033,cg02562493,0.0000114,0.00000445,2.566581819,0.010739972,gain,ns,-0.0000119,0.00000756,-1.57250507,0.116853498,neg,ns,-0.00272288,0.002214006,-1.229842868,0.219688479,neg,ns,0.658192717,0.0000567,0.0000761,0.744783078,0.456967107,pos,ns,0.898348771,Hectd3,Hectd3_Exon,4,116996562,116996611,116996562,116996563,50,-,CGACGAGGACCTGATCCACTTCTTGTATGACCACCTGGGCAAGGAGGATG,"Exon (Hectd3-201/Hectd3, exon 4 of 21)",4,116995317,117005277,9961,1,Hectd3-201,1245,Hectd3-201;Hectd3-203;Urod-201;Urod-205;Urod-209;Urod-206;Urod-204;Urod-202;Urod-203;Urod-210;Urod-207;Urod-208,Hectd3;Hectd3;Urod;Urod;Urod;Urod;Urod;Urod;Urod;Urod;Urod;Urod,0;-1926;-2149;-4897;-4676;-2198;-2205;-2216;-2217;-2965;-2222;-2182,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,76608,ENSMUSG00000046861,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16632,cg03986120,0.0000334,0.0000111,3.006368352,0.002860034,gain,ns,-0.0000296,0.0000189,-1.572349645,0.116889524,neg,ns,0.005083388,0.005522599,0.920470197,0.358042825,pos,ns,0.446065025,-0.000372147,0.000189922,-1.959476523,0.050952876,neg,ns,0.287049368,Six2,Six2_Exon,17,85687549,85687598,85687597,85687598,50,+,CTCTTTTCCTTGAAGCAGTAGCTGGTCTCCTCGCCGTCCCAGATGGAGCG,Promoter (<=1kb),17,85684277,85688274,3998,2,Six2-202,676,Six2-202;Six2-201,Six2;Six2,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,4,20472,ENSMUSG00000024134,conserved gene and region,17,85687133,85688729,1597,*,1597,179,0.686912962,0.951379829,0.11208516,7.54E-145,CpGisland,TRUE,U3,Pr-B
17665,cg10107220,0.0000509,0.00000509,10.00030672,1.37E-20,gain,yes,-0.0000136,0.00000865,-1.572330619,0.116893934,neg,ns,0.004247079,0.002532904,1.67676297,0.094596894,pos,ns,1.024123122,-0.0000892,0.0000871,-1.024334581,0.306475921,neg,ns,0.16908592,Zic4,Zic4_fiveUTR,9,91368998,91369047,91369046,91369047,50,-,AGCCACATGCACCAACGTGACATATAAGCCATTAAAATATCATCCTGACG,5' UTR,9,91362413,91378915,16503,1,Zic4-208,6585,Zic1-201;Zic1-202;Zic4-208;Zic4-206;Zic4-207;Zic4-211;Zic4-204;Zic4-203;Zic4-210;Zic4-209;Zic4-212,Zic1;Zic1;Zic4;Zic4;Zic4;Zic4;Zic4;Zic4;Zic4;Zic4;Zic4,0;0;0;0;0;0;0;0;-1957;0;-2303,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,55,22774,ENSMUSG00000036972,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
11643,cg01118057,-0.0000329,0.00000923,-3.56259467,0.000424951,loss,ns,0.0000247,0.0000157,1.572239711,0.11691501,pos,ns,-0.001502663,0.004594678,-0.327044338,0.74385507,neg,ns,0.128511673,0.00016972,0.000158011,1.074105418,0.283610774,pos,ns,0.662144421,Celf6,Celf6_Exon,9,59590629,59590678,59590677,59590678,50,-,TTTCAGATGAATCGTCCGATCCAAGTGAAGCCAGCTGCCAGTGAGGGCCG,"Exon (Celf6-207/Celf6, exon 3 of 11)",9,59577917,59607292,29376,1,Celf6-207,12712,Celf6-207;Celf6-203;Celf6-205;Celf6-201;Celf6-204;Celf6-202,Celf6;Celf6;Celf6;Celf6;Celf6;Celf6,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,8,76183,ENSMUSG00000032297,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
2114,cg01728384,0.000134896,0.0000117,11.49400746,1.04E-25,gain,yes,-0.0000313,0.0000199,-1.572184712,0.116927763,neg,ns,0.009649859,0.005841229,1.652025478,0.099541845,pos,ns,1.001994315,0.0000462,0.000200879,0.230211748,0.818079072,pos,ns,0.229266991,Skida1,Skida1_Promoter,2,18050765,18050814,18050813,18050814,50,+,CCGAGAGGCAGCAATGAACAATGCCTCGTCACAGCTAATACCATCCAGCG,Promoter (1-2kb),2,18044083,18049051,4969,2,Skida1-202,-1714,Mllt10-201;Skida1-202;Skida1-201;Skida1-203;Skida1-204,Mllt10;Skida1;Skida1;Skida1;Skida1,0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,12,31,72668,ENSMUSG00000054074,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6651,cg26340215,0.0000012,0.00000374,0.32144145,0.748092494,gain,ns,0.00000998,0.00000635,1.572173441,0.116930376,pos,ns,-0.000648076,0.001859619,-0.348499074,0.727701965,neg,ns,0.138046452,0.000122723,0.000064,1.918983811,0.055904365,pos,ns,0.925694488,Uri1,Uri1_Intergenic_downstream,7,37922011,37922060,37922011,37922012,50,+,CGAACAGCTCGCAGACTAAATGGCTGTGTGGGTGAATCAATTATTGCAAG,Distal Intergenic,7,37961301,37962528,1228,2,Uri1-203,40468,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,19,27,19777,ENSMUSG00000030421,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21742,cg20386293,3.45E-08,0.00000211,0.016335371,0.986977348,gain,ns,0.00000564,0.00000359,1.571675136,0.117045969,pos,ns,0.001221966,0.001051387,1.162242629,0.246030912,pos,ns,0.609010323,-0.00000639,0.0000362,-0.176715748,0.859847066,neg,ns,0.956773021,Zfhx3,Zfhx3_Exon,8,108951413,108951462,108951461,108951462,50,-,ACAGAGTGCACTTTGTGTGGCATCAAGTACAGCGCTCGGCTGTCTGTACG,"Exon (Zfhx3-204/Zfhx3, exon 15 of 16)",8,107942644,108961630,1018987,1,Zfhx3-204,1008769,Zfhx3-204;Zfhx3-201,Zfhx3;Zfhx3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,46,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16165,cg17077229,0.00000545,0.00000513,1.062141895,0.288998006,gain,ns,0.0000137,0.00000872,1.57162904,0.117056666,pos,ns,-0.00066128,0.002553658,-0.258954127,0.795842498,neg,ns,0.099172873,0.0000145,0.0000878,0.16475833,0.869241583,pos,ns,0.891373602,Cacna1a,Cacna1a_Exon,8,84544666,84544715,84544666,84544667,50,+,CGCCGCATGGTCAAAACTCAGGCCTTCTACTGGACTGTACTCAGTTTGGT,"Exon (Cacna1a-213/Cacna1a, exon 13 of 49)",8,84338639,84640246,301608,1,Cacna1a-213,206027,Cacna1a-213;Cacna1a-201;Cacna1a-202;Cacna1a-211;Cacna1a-204,Cacna1a;Cacna1a;Cacna1a;Cacna1a;Cacna1a,0;0;0;0;-2379,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,12,12286,ENSMUSG00000034656,conserved gene and region,8,84544584,84544817,234,*,234,13,0.551282051,0.744129159,0.055555556,0.000000408,CpGisland,TRUE,NA,NRS
20999,cg21461181,0.0000101,0.00000598,1.681076514,0.093755234,gain,ns,-0.000016,0.0000102,-1.571544009,0.117076401,neg,ns,-0.009009492,0.002976548,-3.026826051,0.002678625,neg,ns,2.572088159,0.0000954,0.000102363,0.932084013,0.352018455,pos,ns,0.875113716,Tanc2,Tanc2_threeUTR,11,105928011,105928060,105928059,105928060,50,-,TTTGTCATACAGACCACTCAAGGGCTGAAGTGTTGGTAACCTTCATTTCG,3' UTR,11,105589991,105929304,339314,1,Tanc2-202,338020,Tanc2-202;Tanc2-204;Tanc2-201,Tanc2;Tanc2;Tanc2,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,20,77097,ENSMUSG00000053580,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10073,cg26355626,0.0000944,0.000014,6.717816745,8.83E-11,gain,yes,-0.0000375,0.0000239,-1.571395874,0.117110789,neg,ns,0.017007801,0.006991435,2.432662506,0.01555372,pos,ns,1.808165718,-0.000792474,0.000240435,-3.296001345,0.001094509,neg,ns,0.20297365,Hoxa1,Hoxa1_Exon,6,52161047,52161096,52161047,52161048,50,+,CGCGGCTCAGCCAAGCTGTTGTTTTAAAAGAGCAATAAAAATGAATTATG,Promoter (2-3kb),6,52155595,52158317,2723,2,Hoxa1-202,-2730,Gm28308-201;Hoxa1-201;Hoxa1-202;Hoxa2-201,Gm28308;Hoxa1;Hoxa1;Hoxa2,0;-2730;-2730;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,6,15394,ENSMUSG00000029844,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
8038,cg01969194,-0.0000984,0.0000234,-4.209698301,0.0000335,loss,ns,0.0000624,0.0000397,1.571379357,0.117114624,pos,ns,-0.013532189,0.011637463,-1.162812573,0.245799894,neg,ns,0.60941831,0.000795831,0.000400211,1.988527573,0.047632383,pos,ns,0.665098356,Pax2,Pax2_Intergenic_upstream,19,44699080,44699129,44699080,44699081,50,-,CGGCCTGCCATAAAATTAGACTAGCAAATACCTCCTGACAAAGATGCATG,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-56965,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,19,44698991,44699081,91,*,91,9,0.648351648,0.94137931,0.098901099,0.000000407,CpGisland,TRUE,U13,Hc-P
27681,cg10137513,-0.00000255,0.00000163,-1.562947903,0.119085086,loss,ns,0.00000436,0.00000277,1.571355795,0.117120094,pos,ns,0.002573306,0.000812851,3.16577824,0.001700441,pos,ns,2.769438442,-0.0000801,0.000028,-2.866437568,0.004435271,neg,ns,0.964687665,Akt3,Akt3_Exon,1,177067308,177067357,177067308,177067309,50,+,CGCTCTCTCGACAAATGGAAAAACAGCTGCAGGGTAAACAGCAGGGACAG,"Exon (Akt3-201/Akt3, exon 8 of 13)",1,177020073,177248805,228733,2,Akt3-201,181448,Akt3-201;Akt3-203;Akt3-202,Akt3;Akt3;Akt3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,14,23797,ENSMUSG00000019699,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10112,cg11227540,0.000126349,0.0000156,8.104449638,1.24E-14,gain,yes,-0.0000416,0.0000265,-1.571256464,0.117143158,neg,ns,0.013449515,0.007759312,1.733338715,0.084029823,pos,ns,1.075566552,-0.000628038,0.000266842,-2.353593487,0.019217037,neg,ns,0.140065615,Gm28308,Gm28308_Intron,6,52190956,52191005,52191004,52191005,50,+,AGGGCAATTAAATTTATGGGGGCTATAATTACTGCCCTAACAGTTTGGCG,"Intron (Hoxaas3-203/Hoxaas3-203, intron 1 of 1)",6,52163359,52213339,49981,2,Gm28308-201,22334,Gm28308-201;Hoxa3-201;Hoxa4-201,Gm28308;Hoxa3;Hoxa4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,46,103,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17110,cg08489771,-0.00000308,0.00000275,-1.119464246,0.263808753,loss,ns,-0.00000735,0.00000468,-1.571243445,0.117146182,neg,ns,-0.003732408,0.001370284,-2.723819551,0.006819101,neg,ns,2.166272869,0.0000342,0.0000471,0.726632723,0.46799929,pos,ns,0.933297243,Msi2,Msi2_Intron,11,88443713,88443762,88443761,88443762,50,-,TTTTCAAGCCATTTTCCCCACTTATTTAATCACGAGATACAAAAGGAGCG,"Intron (Msi2-203/Msi2, intron 7 of 13)",11,88339382,88718229,378848,2,Msi2-203,274467,Msi2-203;Msi2-201;Msi2-207,Msi2;Msi2;Msi2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,21,36,76626,ENSMUSG00000069769,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26866,cg11032070,-0.00000531,0.0000019,-2.791253211,0.005576121,loss,ns,-0.00000508,0.00000323,-1.571016863,0.117198807,neg,ns,-0.001640388,0.00094726,-1.731717959,0.084318591,neg,ns,1.074076659,-0.0000177,0.0000326,-0.544158851,0.586723331,neg,ns,0.048733868,Nol4l,Nol4l_Exon,2,153529457,153529506,153529457,153529458,50,-,CGGCACATACACCACTTGGCCCATCTTGGGTTCCCGGCCGCTGCCCAGGC,Promoter (<=1kb),2,153407462,153529971,122510,2,Nol4l-201,465,Nol4l-201,Nol4l,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,14,329540,ENSMUSG00000061411,conserved gene and region,2,153528543,153530628,2086,*,2086,233,0.761744966,0.771121688,0.111697028,6.66E-188,CpGisland,TRUE,NA,NRS
12941,cg10462756,0.0000338,0.0000104,3.26026849,0.001236907,gain,ns,0.0000277,0.0000176,1.570784237,0.117252856,pos,ns,0.006194998,0.005157277,1.201214786,0.230584844,pos,ns,0.637169242,0.000190058,0.000177358,1.07160651,0.28473036,pos,ns,0.629393482,Gm44887,Gm44887_Intergenic_downstream,7,68560026,68560075,68560026,68560027,50,+,CGTAAAGGCACAACACTAACAATTAGATAATTACGGAGACCCATGCTGTT,Distal Intergenic,7,68598677,68598854,178,2,Gm44887-201,38779,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,4,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10630,cg20222500,0.0000117,0.00000203,5.784240391,1.78E-08,gain,yes,0.00000542,0.00000345,1.570757095,0.117259164,pos,ns,0.001838444,0.001010816,1.818772475,0.069910915,pos,ns,1.155455014,-0.0000199,0.0000348,-0.571730043,0.567919189,neg,ns,0.048940561,Dnaja4,Dnaja4_Exon,9,54699730,54699779,54699778,54699779,50,+,TGGTGAAGGAGACCCAGTACTATGACATCCTGGGCGTGAAGCCCAGCGCG,Promoter (<=1kb),9,54698873,54714761,15889,1,Dnaja4-202,857,Dnaja4-202;Dnaja4-203;Dnaja4-201,Dnaja4;Dnaja4;Dnaja4,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,4,58233,ENSMUSG00000032285,conserved gene and region,9,54699776,54700105,330,*,330,31,0.675757576,0.835102041,0.093939394,5.26E-23,CpGisland,TRUE,NA,NRS
20370,cg13373685,0.000112715,0.00000803,14.03465157,5.59E-35,gain,yes,-0.0000214,0.0000136,-1.57063834,0.117286764,neg,ns,0.008838236,0.0039972,2.211106642,0.027758021,pos,ns,1.556611499,-0.0000363,0.000137463,-0.264367317,0.791672566,neg,ns,0.252907546,Hoxc5,Hoxc5_Exon,15,103014185,103014234,103014233,103014234,50,-,CATCCAGGTACTGCTACGGCGGATTGGACTTAAGCATCACTTTCCCACCG,"Exon (Hoxc5-201/Hoxc5, exon 1 of 2)",15,102967443,103015676,48234,1,Hoxc5-202,46742,Hoxc4-202;Hoxc5-202;Hoxc5-201;Hoxc6-202;Hoxc6-203;Hoxc6-201,Hoxc4;Hoxc5;Hoxc5;Hoxc6;Hoxc6;Hoxc6,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,72,134,15424,ENSMUSG00000022485,mapped to different genes,15,103014167,103014734,568,*,568,41,0.588028169,0.835773758,0.072183099,1.73E-25,CpGisland,TRUE,U13,Hc-P
5127,cg04226429,0.0000675,0.0000118,5.704616241,2.72E-08,gain,yes,-0.0000316,0.0000201,-1.570583637,0.11729948,neg,ns,-0.010067101,0.005888938,-1.709493648,0.088360261,neg,ns,1.053743008,-0.000246215,0.00020252,-1.215754759,0.225003359,neg,ns,0.57119913,Bin1,Bin1_Exon,18,32414968,32415017,32414968,32414969,50,-,CGCCCCCCAGTGGTGCCAAGGCAAACTGCAGGCTCATCTCGTAGCTCAAA,"Exon (Bin1-201/Bin1, exon 7 of 19)",18,32377230,32435290,58061,1,Bin1-206,37738,Bin1-206;Bin1-205;Bin1-202;Bin1-201;Bin1-203,Bin1;Bin1;Bin1;Bin1;Bin1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,30948,ENSMUSG00000024381,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
99,cg13054171,-0.00000305,0.00000377,-0.808979467,0.419147397,loss,ns,0.0000101,0.00000641,1.570581959,0.11729987,pos,ns,0.005200713,0.001876841,2.770992533,0.005926062,pos,ns,2.227233822,-0.000149975,0.0000645,-2.323589185,0.020793996,neg,ns,0.929418551,Crebbp,Crebbp_Exon,16,4137458,4137507,4137458,4137459,50,+,CGTGAAGATGCACAATGGGCAACTATGACCAGAAAAACAACGAGATGTTA,"Exon (Crebbp-201/Crebbp, exon 5 of 31)",16,4081328,4213997,132670,2,Crebbp-201,76490,Crebbp-201;Crebbp-205,Crebbp;Crebbp,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,7,12914,ENSMUSG00000022521,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4004,cg13741927,0.0000284,0.00000406,6.995853782,1.63E-11,gain,yes,-0.0000108,0.0000069,-1.570496045,0.117319843,neg,ns,-0.001990294,0.002021814,-0.98441002,0.325681629,neg,ns,0.487206738,0.000133123,0.0000695,1.914614582,0.056461939,pos,ns,0.928279028,Inpp5e,Inpp5e_Exon,2,26400412,26400461,26400460,26400461,50,+,AAAAGGTGAAGCTGATGCCCAAGGCCCCCTTGGTCTTGATCTGAGACACG,"Exon (Inpp5e-205/Inpp5e, exon 5 of 10)",2,26396249,26409200,12952,2,Inpp5e-205,8739,Inpp5e-205;Inpp5e-203;Inpp5e-201;Inpp5e-202;Inpp5e-206;Inpp5e-207;Inpp5e-204;Pmpca-201,Inpp5e;Inpp5e;Inpp5e;Inpp5e;Inpp5e;Inpp5e;Inpp5e;Pmpca,0;-941;0;0;0;0;0;11073,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,64436,ENSMUSG00000026925,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1349,cg07707239,-0.000000114,0.0000014,-0.081108991,0.935407615,loss,ns,0.00000374,0.00000238,1.57044031,0.117332801,pos,ns,0.000733403,0.000697019,1.052199174,0.293527654,pos,ns,0.532350977,-0.0000221,0.000024,-0.923438718,0.356496813,neg,ns,0.962273067,Mindy3,Mindy3_threeUTR,2,12401014,12401063,12401062,12401063,50,+,ATGTTACTTACTGAATTAATGCATGAAATCGCTCAAAGCCAAGCTCTTCG,3' UTR,2,12347263,12419435,72173,2,Mindy3-216,18372,Mindy3-216;Mindy3-205;Mindy3-214;Mindy3-217;Mindy3-201;Mindy3-211;Mindy3-210;Mindy3-218;Mindy3-203;Mindy3-208;Mindy3-206;Mindy3-204;Mindy3-207;Mindy3-213;Mindy3-202;Mindy3-212;Mindy3-215,Mindy3;Mindy3;Mindy3;Mindy3;Mindy3;Mindy3;Mindy3;Mindy3;Mindy3;Mindy3;Mindy3;Mindy3;Mindy3;Mindy3;Mindy3;Mindy3;Mindy3,0;0;0;0;0;0;-3129;0;0;0;0;0;0;0;0;0;3666,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,2,66960,ENSMUSG00000026767,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8067,cg04426458,-0.0000084,0.00000443,-1.89555929,0.058948322,loss,ns,-0.0000118,0.00000753,-1.570218043,0.11738449,neg,ns,-0.007683144,0.00220475,-3.484813279,0.000563465,neg,ns,3.249132985,-0.000091,0.0000758,-1.200039507,0.231040283,neg,ns,0.864964087,Ebf1,Ebf1_Intron,11,44717139,44717188,44717139,44717140,50,-,CGGCATATTGCCTTTTTCAGTGAGGGCATGGCTGTTTATAGCACTTTCAT,"Intron (Ebf1-203/Ebf1, intron 6 of 15)",11,44617317,45004995,387679,1,Ebf1-203,99822,Ebf1-203;Ebf1-202;Ebf1-201,Ebf1;Ebf1;Ebf1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,80,13591,ENSMUSG00000057098,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26790,cg09396124,-0.0000549,0.0000072,-7.619629722,3.12E-13,loss,yes,0.0000192,0.0000122,1.570097454,0.11741254,pos,ns,0.002844713,0.003584352,0.793647749,0.428007587,pos,ns,0.368548533,-0.000518393,0.000123266,-4.205500777,0.0000341,neg,ns,0.752237085,Gpr173,Gpr173_Exon,X,152346676,152346725,152346724,152346725,50,-,GCATGCCCATTCTGCCGGATACCCAGCAGGGTTGGTGGCATGGGCCCACG,"Exon (Gpr173-201/Gpr173, exon 3 of 3)",20,152343598,152368704,25107,2,Gpr173-201,21979,Gpr173-201;Tspyl2-202;Tspyl2-203;Tspyl2-201;Tspyl2-205;Tspyl2-204,Gpr173;Tspyl2;Tspyl2;Tspyl2;Tspyl2;Tspyl2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,70771,ENSMUSG00000056679,conserved gene and region,X,152346606,152346762,157,*,157,10,0.630573248,0.651993356,0.063694268,0.00000418,CpGisland,TRUE,U11,Tr-P
15032,cg11407867,-0.00000145,0.00000327,-0.443014967,0.658063895,loss,ns,0.00000873,0.00000556,1.570036239,0.117426782,pos,ns,0.002083624,0.001629933,1.278349878,0.202082366,pos,ns,0.694471582,-0.0000739,0.0000561,-1.317945888,0.188494829,neg,ns,0.932515677,Nlk,Nlk_Exon,11,78572376,78572425,78572376,78572377,50,+,CGCCCTTCATCTAGGTAGGGGTGGGCTAAGGCATCCTTAGCGGATATTCT,Promoter (<=1kb),11,78567414,78572399,4986,2,Nlk-204,0,Gm17235-201;Nlk-201;Nlk-203;Nlk-204,Gm17235;Nlk;Nlk;Nlk,-3812;0;-3460;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,6,18099,ENSMUSG00000017376,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8119,cg23758053,0.0000066,0.00000191,3.462230802,0.000610988,gain,ns,0.00000508,0.00000324,1.570016218,0.117431439,pos,ns,0.003178625,0.000948753,3.350320408,0.000906954,pos,ns,3.04241463,-0.0000657,0.0000326,-2.01452046,0.044818202,neg,ns,0.067574821,Pax2,Pax2_fiveUTR,19,44756572,44756621,44756572,44756573,50,+,CGCTGGCGAATCACAGAGTGGTGGAATCTATTGCCTTTGTCTGACAAGTC,Promoter (<=1kb),19,44756045,44837851,81807,1,Pax2-203,527,Pax2-203;Pax2-201;Pax2-202,Pax2;Pax2;Pax2,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,166,18504,ENSMUSG00000004231,conserved gene but different region,19,44756352,44756579,228,*,228,19,0.649122807,0.89301175,0.083333333,2.80E-13,CpGisland,TRUE,U3,Pr-B
17267,cg06557369,-0.00000125,0.00000487,-0.256262147,0.797918397,loss,ns,0.000013,0.00000827,1.570007364,0.117433499,pos,ns,-0.000665532,0.002422313,-0.274750748,0.783690754,neg,ns,0.105855277,-0.0000836,0.0000833,-1.003942405,0.316189363,neg,ns,0.862150086,Nrxn3,Nrxn3_Intron,12,89354351,89354400,89354351,89354352,50,-,CGTGTGTCTGTCCCCGGAAGGGTGGACTGATTGTTTTTGGATGTCTGCAG,"Intron (Nrxn3-213/Nrxn3, intron 6 of 18)",12,88722986,90332878,1609893,1,Nrxn3-213,631365,Nrxn3-213;Nrxn3-208;Nrxn3-205;Nrxn3-201;Nrxn3-210,Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,39,18191,ENSMUSG00000066392,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26341,cg19848879,0.0000559,0.00000986,5.666899762,3.33E-08,gain,yes,0.0000263,0.0000168,1.569846757,0.117470872,pos,ns,0.003981613,0.004908356,0.811190713,0.417878524,pos,ns,0.378949948,0.0000984,0.000168798,0.582974715,0.560334153,pos,ns,0.346966676,Kiz,Kiz_Intron,2,146833396,146833445,146833444,146833445,50,+,CACAGATGTTGTTTGGCTGAAGAGCAGCTGAATCCCCTCTCTGGCAGCCG,"Intron (Gm14114-201/Gm14114-201, intron 1 of 1)",2,146855864,146970097,114234,1,Kiz-201,-22419,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,29,228730,ENSMUSG00000074749,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
26780,cg24268265,0.0000202,0.00000753,2.677010256,0.007823627,gain,ns,-0.0000201,0.0000128,-1.569755434,0.117492127,neg,ns,0.022304064,0.00374682,5.952798373,7.13E-09,pos,ns,8.146933465,-0.00055839,0.000128853,-4.33355225,0.0000199,neg,ns,0.81391035,Fubp1,Fubp1_threeUTR,3,152235568,152235617,152235568,152235569,50,+,CGATGAGCATGGACCATAGAAGGGCTCAATGTAGAAGGTAAAATTGGCAA,3' UTR,3,152210422,152236826,26405,1,Fubp1-202,25146,Fubp1-202;Fubp1-220;Fubp1-206;Fubp1-205;Fubp1-215;Fubp1-201;Fubp1-219;Fubp1-216;Fubp1-210;Fubp1-217;Fubp1-211;Fubp1-208;Fubp1-218;Nexn-212;Nexn-201;Nexn-211;Nexn-203;Nexn-207;Nexn-215,Fubp1;Fubp1;Fubp1;Fubp1;Fubp1;Fubp1;Fubp1;Fubp1;Fubp1;Fubp1;Fubp1;Fubp1;Fubp1;Nexn;Nexn;Nexn;Nexn;Nexn;Nexn,0;0;0;0;0;0;0;0;0;0;0;8263;7727;30150;30701;19694;12647;19694;9208,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,2,51886,ENSMUSG00000028034,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26373,cg01621100,0.00000294,0.00000297,0.987277503,0.324276558,gain,ns,0.00000793,0.00000505,1.569679788,0.117509735,pos,ns,0.00408344,0.001480382,2.758370051,0.006154011,pos,ns,2.21084171,-0.0000623,0.0000509,-1.223098035,0.22222163,neg,ns,0.039879554,Nkx2-2,Nkx2-2_Exon,2,147184024,147184073,147184072,147184073,50,+,GGGGGTGTGCTGTCGGGTACTGGGGGGTGCTGGCCGAGCTGTACTGGGCG,"Exon (Nkx2-2-201/Nkx2-2, exon 2 of 2)",2,147177546,147186101,8556,2,Nkx2-2-203,2028,Nkx2-2-203;Nkx2-2-201;Nkx2-2-202;Nkx2-2-204,Nkx2-2;Nkx2-2;Nkx2-2;Nkx2-2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,15,30,18088,ENSMUSG00000027434,conserved gene and region,2,147184037,147184754,718,*,718,60,0.674094708,0.742310675,0.08356546,8.11E-41,CpGisland,TRUE,U3,Pr-B
26812,cg26545086,-0.000000192,0.00000465,-0.041289759,0.967091477,loss,ns,-0.0000124,0.00000789,-1.569668731,0.117512309,neg,ns,0.001730446,0.002312292,0.74836806,0.454805569,pos,ns,0.342174226,-0.0000804,0.0000795,-1.011049924,0.312781022,neg,ns,0.841739094,Shroom2,Shroom2_Exon,X,152613465,152613514,152613513,152613514,50,+,AGCGACAGCAGGAGGTTCACCACTTTGTCCAGGTCTCCAATGAACATCCG,"Exon (Shroom2-202/Shroom2, exon 9 of 10)",20,152609509,152769461,159953,2,Shroom2-202,155947,Shroom2-202;Shroom2-204;Shroom2-201;Shroom2-206,Shroom2;Shroom2;Shroom2;Shroom2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,110380,ENSMUSG00000045180,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9932,cg25198616,-0.00000356,0.00000293,-1.214710807,0.225400842,loss,ns,0.00000781,0.00000498,1.56945023,0.117563183,pos,ns,0.004126496,0.001457741,2.830746702,0.004947334,pos,ns,2.305628727,-0.000142441,0.0000501,-2.841340864,0.004789996,neg,ns,0.930085514,Strn3,Strn3_Exon,12,51619815,51619864,51619815,51619816,50,-,CGTTTTATTGTCAAAAAATTTGATGTGTCTATCTTCATGAGCAGTTATTG,"Exon (Strn3-201/Strn3, exon 16 of 18)",12,51609632,51691887,82256,2,Strn3-201,72023,Strn3-201;Strn3-202,Strn3;Strn3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,94186,ENSMUSG00000020954,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25956,cg21094342,-0.0000659,0.0000116,-5.684166125,3.03E-08,loss,yes,0.0000309,0.0000197,1.56928346,0.117602024,pos,ns,-0.012368662,0.005774494,-2.141947223,0.032976704,neg,ns,1.481792749,0.00000944,0.000198584,0.047514953,0.962133409,pos,ns,0.571588564,Col4a5,Col4a5_Exon,X,141664640,141664689,141664640,141664641,50,+,CGATCTTTGGGCTTTGGTGAACTCTGATCTTCCCAGGTTTTCAAGGTTAG,"Exon (Col4a5-202/Col4a5, exon 43 of 53)",20,141475385,141689234,213850,1,Col4a5-202,189255,Col4a5-202;Col4a5-201;Col4a5-204;Col4a5-203,Col4a5;Col4a5;Col4a5;Col4a5,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,12830,ENSMUSG00000031274,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5423,cg06641629,0.00000417,0.0000204,0.20452553,0.838077058,gain,ns,0.0000544,0.0000346,1.568991856,0.117669963,pos,ns,0.025924525,0.010148693,2.554469225,0.01111276,pos,ns,1.954178063,-0.001051843,0.000349013,-3.013766153,0.002793171,neg,ns,0.560773641,Mvb12b,Mvb12b_Intergenic_upstream,2,33920156,33920205,33920204,33920205,50,-,GGCCATAATATTTAAGTGTCTTGGCTGTAAGCCTGCGACTGGGTCCCCCG,Distal Intergenic,2,33729953,33887946,157994,2,Mvb12b-201,-32259,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,16,47,72543,ENSMUSG00000038740,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27735,cg08424029,-0.00000447,0.00000317,-1.409823286,0.159594336,loss,ns,0.00000844,0.00000538,1.568964615,0.117676311,pos,ns,0.003544536,0.001576288,2.248660302,0.025236194,pos,ns,1.597976144,-0.000138328,0.0000542,-2.551787862,0.011196829,neg,ns,0.938377322,Cdc42bpa,Cdc42bpa_Exon,1,180117674,180117723,180117722,180117723,50,+,GCACCAAGACTCACAGCATTCTTTCTTGGCATTTTTGAATACGCCTACCG,"Exon (Cdc42bpa-203/Cdc42bpa, exon 21 of 35)",1,179960472,180163156,202685,1,Cdc42bpa-203,157202,Cdc42bpa-203;Cdc42bpa-204;Cdc42bpa-201;Cdc42bpa-202;Cdc42bpa-218;Cdc42bpa-207;Cdc42bpa-216;Cdc42bpa-212;Cdc42bpa-209;Cdc42bpa-214;Cdc42bpa-211,Cdc42bpa;Cdc42bpa;Cdc42bpa;Cdc42bpa;Cdc42bpa;Cdc42bpa;Cdc42bpa;Cdc42bpa;Cdc42bpa;Cdc42bpa;Cdc42bpa,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,10,226751,ENSMUSG00000026490,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2766,cg17668518,0.000122517,0.00000903,13.57142049,2.99E-33,gain,yes,-0.0000241,0.0000153,-1.568654743,0.117748543,neg,ns,0.010734214,0.004493109,2.389039217,0.017490223,pos,ns,1.757204645,-0.000120103,0.000154518,-0.777274528,0.437589554,neg,ns,0.137342054,Prdm13,Prdm13_Promoter,4,21687960,21688009,21687960,21687961,50,-,CGACACGCGAACAATTTTATCAATAGGACCATGTAAAGGCCGACTGTGAG,Promoter (2-3kb),4,21677480,21685963,8484,2,Prdm13-205,-2046,Prdm13-205;Prdm13-201;Prdm13-202;Prdm13-203;Prdm13-206;Prdm13-204,Prdm13;Prdm13;Prdm13;Prdm13;Prdm13;Prdm13,0;0;0;0;0;-2115,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,19,23,230025,ENSMUSG00000040478,conserved gene and region,4,21687850,21688001,152,*,152,12,0.546052632,1.062937063,0.078947368,2.89E-08,CpGisland,TRUE,U13,Hc-P
3028,cg16916973,0.0000129,0.00000487,2.650790998,0.008442762,gain,ns,0.000013,0.00000827,1.56861722,0.117757292,pos,ns,0.003170115,0.002421689,1.309050901,0.191486614,pos,ns,0.717861581,-0.00000313,0.0000833,-0.037611049,0.970022006,neg,ns,0.538841742,Lrmda,Lrmda_Intron,14,22440536,22440585,22440536,22440537,50,-,CGTTATTCTAATTATGACGAGAAAGCTATAGATTGATGAGCCGAGTTTTC,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,420824,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206;Lrmda-202,Lrmda;Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22931,cg24469733,-0.00000903,0.0000176,-0.51403396,0.607594466,loss,ns,0.0000468,0.0000299,1.568611243,0.117758686,pos,ns,0.005066687,0.00874732,0.579227313,0.562856457,pos,ns,0.249602347,-0.0004862,0.00030082,-1.616251047,0.107057211,neg,ns,0.637803049,Isl1,Isl1_threeUTR,13,116298662,116298711,116298662,116298663,50,+,CGAGACGCTTGTGGCAAAATAGAGGTAACCTTGTTGCAATGCTTTATAAG,3' UTR,13,116298281,116309689,11409,2,Isl1-201,10978,Isl1-201;Isl1-202;Isl1-203;Isl1-204,Isl1;Isl1;Isl1;Isl1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,14,16392,ENSMUSG00000042258,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
11385,cg21104978,0.0000012,0.00000375,0.318911856,0.750008126,gain,ns,0.00000999,0.00000637,1.568600433,0.117761207,pos,ns,0.003993844,0.001866086,2.140225365,0.033116738,pos,ns,1.479952453,-0.0000964,0.0000642,-1.502396271,0.134012746,neg,ns,0.928285494,Slc12a2,Slc12a2_Exon,18,57900036,57900085,57900084,57900085,50,+,TATGATAGATGAAATCAATGATATCCGAATTATTGGAGCCATTACAGTCG,"Exon (Slc12a2-201/Slc12a2, exon 6 of 27)",18,57878678,57946821,68144,1,Slc12a2-201,21358,Slc12a2-201,Slc12a2,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,20496,ENSMUSG00000024597,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5926,cg24765252,0.0000497,0.0000084,5.925799495,8.27E-09,gain,yes,0.0000224,0.0000143,1.568585336,0.117764727,pos,ns,0.012163846,0.004178407,2.911120446,0.003862376,pos,ns,2.413145442,0.00000543,0.000143695,0.03779213,0.969877744,pos,ns,0.250450342,Osr2,Osr2_Exon,15,35302830,35302879,35302878,35302879,50,+,TACAGCTGCGAGCAGTGCGGCAAAGTGTTCAGGCGAAACTGTGATCTGCG,"Exon (Osr2-203/Osr2, exon 3 of 3)",15,35296098,35303304,7207,1,Osr2-203,6732,Osr2-203;Osr2-201;Osr2-205;Osr2-204,Osr2;Osr2;Osr2;Osr2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,6,107587,ENSMUSG00000022330,conserved gene and region,15,35302838,35302979,142,*,142,12,0.654929578,0.815311005,0.084507042,1.33E-08,CpGisland,TRUE,NA,NRS
21307,cg18478130,-0.0000109,0.00000839,-1.302784631,0.193615221,loss,ns,-0.0000224,0.0000143,-1.568571819,0.117767879,neg,ns,-0.002954448,0.004176363,-0.707421283,0.479836184,neg,ns,0.318907006,-0.000207403,0.000143625,-1.44405837,0.149732431,neg,ns,0.777277485,Rbm15,Rbm15_Intergenic_downstream,3,107324886,107324935,107324886,107324887,50,-,CGAGGTTAAAATTCAAAACAAGCCCAACAAGCCTGCATTTCAAGGTGGTC,Distal Intergenic,3,107327135,107333101,5967,2,Rbm15-202,8215,Rbm15-201;Rbm15-202,Rbm15;Rbm15,0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,9,229700,ENSMUSG00000048109,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
9863,cg15171944,0.0000273,0.00000667,4.096457573,0.0000536,gain,ns,0.0000178,0.0000113,1.568532541,0.117777038,pos,ns,0.011490476,0.003317945,3.4631305,0.000609025,pos,ns,3.215364541,-0.000124855,0.000114104,-1.094224674,0.274705935,neg,ns,0.108049735,Nfe2l3,Nfe2l3_Exon,6,51269822,51269871,51269870,51269871,50,-,TCTAGAGACAAAGTTCTGTAGTGCACTGACTTCTATCATACTCAGAGTCG,"Exon (Mir148a-201/Mir148a-201, exon 1 of 1)",6,51432670,51458768,26099,1,Nfe2l3-201,-162848,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,5,18025,ENSMUSG00000029832,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11455,cg15807707,-0.00000109,0.00000279,-0.391772555,0.695495451,loss,ns,0.00000744,0.00000474,1.568467225,0.117792271,pos,ns,0.001984842,0.001389048,1.428922442,0.154033367,pos,ns,0.81238519,-0.0000772,0.0000478,-1.616963777,0.106903192,neg,ns,0.934489859,Hnrnpk,Hnrnpk_Intron,13,58396300,58396349,58396300,58396301,50,-,CGTGATCAGGCTATTGTCGCATATATTGGTAAAGCTACTACAACATATTT,"Intron (Hnrnpk-202/Hnrnpk, intron 8 of 17)",13,58391142,58403343,12202,2,Hnrnpk-202,6994,Hnrnpk-202;Hnrnpk-224;Hnrnpk-221;Hnrnpk-232;Hnrnpk-216;Hnrnpk-201;Hnrnpk-205;Hnrnpk-217;Hnrnpk-206;Hnrnpk-209;Hnrnpk-213;Hnrnpk-227;Hnrnpk-234;Hnrnpk-233;Hnrnpk-228;Hnrnpk-214;Hnrnpk-215;Hnrnpk-211;Hnrnpk-208;Hnrnpk-212;Hnrnpk-231;Hnrnpk-230;Hnrnpk-203;Hnrnpk-218;Hnrnpk-226;Hnrnpk-207;Hnrnpk-219;Hnrnpk-225;Hnrnpk-229;Hnrnpk-223;Hnrnpk-220;Hnrnpk-210;Hnrnpk-204;Hnrnpk-222,Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk,0;0;0;0;0;0;0;-2432;-1515;-2325;-1102;-2216;-2411;-2130;-1604;0;-580;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;6153;5706,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,19,15387,ENSMUSG00000021546,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17104,cg02059324,0.000000226,0.00000216,0.104473468,0.916861183,gain,ns,-0.00000577,0.00000368,-1.56813385,0.117870044,neg,ns,0.000351704,0.001077379,0.326443604,0.74430903,pos,ns,0.128246712,0.0000168,0.0000371,0.453939399,0.650190082,pos,ns,0.960339351,Msi2,Msi2_Intron,11,88424413,88424462,88424461,88424462,50,-,GTGCCAATATAAACTCTGGGACGCAGTGGTAAATTCACCAAATTAAATCG,"Intron (Msi2-203/Msi2, intron 7 of 13)",11,88339382,88718229,378848,2,Msi2-203,293767,Msi2-203;Msi2-201;Msi2-207,Msi2;Msi2;Msi2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,21,36,76626,ENSMUSG00000069769,conserved gene and region,11,88424434,88424604,171,*,171,11,0.614035088,0.693072955,0.064327485,0.00000103,CpGisland,TRUE,U11,Tr-P
14856,cg10171614,-0.00000105,0.00000161,-0.654284413,0.513413683,loss,ns,-0.00000429,0.00000274,-1.567948799,0.117913231,neg,ns,-0.000312212,0.000802284,-0.389154282,0.697429197,neg,ns,0.156499875,-0.0000228,0.0000276,-0.825756815,0.409577086,neg,ns,0.957071519,Phf12,Phf12_Exon,11,78015572,78015621,78015572,78015573,50,-,CGCTCACTGCCATGCCCCTGGGCAGATGGATGTGTCCGAATCACATCGAA,"Exon (Phf12-202/Phf12, exon 6 of 11)",11,77982754,78026214,43461,1,Phf12-202,32818,Phf12-202;Phf12-201,Phf12;Phf12,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,14,27,268448,ENSMUSG00000037791,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9277,cg25238025,-0.0000113,0.00000319,-3.540619358,0.000460444,loss,ns,0.00000849,0.00000542,1.56783065,0.117940812,pos,ns,0.000671334,0.001586543,0.423142639,0.67248459,pos,ns,0.172317663,-0.0000249,0.0000546,-0.456152004,0.648600072,neg,ns,0.941975596,Foxp4,Foxp4_Intron,17,47877456,47877505,47877504,47877505,50,+,AGAGAGATCTAATTGCAAATGAACTAATTAAGTAAACCTCTGACGAAGCG,"Intron (Foxp4-204/Foxp4, intron 8 of 16)",17,47867133,47924645,57513,2,Foxp4-204,47140,Foxp4-204;Foxp4-203;Foxp4-201;Foxp4-202;Foxp4-205;Foxp4-208;Foxp4-206,Foxp4;Foxp4;Foxp4;Foxp4;Foxp4;Foxp4;Foxp4,0;0;0;0;10928;1448;10645,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,25,74123,ENSMUSG00000023991,conserved gene and region,17,47877499,47877685,187,*,187,11,0.620320856,0.613114754,0.058823529,0.00000245,CpGisland,TRUE,U12,Tr-I
2464,cg08215831,0.0000371,0.0000119,3.103377915,0.002089583,gain,ns,0.0000318,0.0000203,1.567749082,0.117959856,pos,ns,0.005494242,0.005943106,0.924473095,0.355959102,pos,ns,0.448599897,0.0000633,0.000204383,0.309565957,0.757099025,pos,ns,0.409636323,Crh,Crh_Promoter,3,19695407,19695456,19695407,19695408,50,+,CGCTCTCTTGACAGCTCGATTGCGTGCTGCCTCTGCTCCTGCATAAATCA,Promoter (<=1kb),3,19693401,19695396,1996,2,Crh-201,-11,Crh-201;Trim55-201,Crh;Trim55,0;50933,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,3,12918,ENSMUSG00000049796,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
21330,cg07235448,-0.0000138,0.00000566,-2.427768538,0.015761096,loss,ns,0.0000151,0.00000962,1.567367262,0.118049033,pos,ns,0.002504748,0.002819512,0.888362036,0.375034808,pos,ns,0.425928422,-0.000110231,0.000097,-1.136836895,0.256484471,neg,ns,0.875969697,Gm2736,Gm2736_Promoter,13,107341714,107341763,107341762,107341763,50,+,TTTATTAAGGAACACCTAATAGACTCTCATGAGATTCAAATGTCAAGACG,Promoter (6-7kb),13,107348204,107348516,313,1,Gm2736-201,-6441,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,2,100040366,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13680,cg27362456,-0.00000266,0.00000152,-1.744636411,0.082039202,loss,ns,0.00000405,0.00000259,1.567355464,0.11805179,pos,ns,0.001998734,0.000757798,2.637554681,0.008771752,pos,ns,2.056913676,-0.000045,0.0000261,-1.726698832,0.085217966,neg,ns,0.956862019,Irx1,Irx1_Intergenic_upstream,13,72028782,72028831,72028830,72028831,50,-,TAATGAAATGCTCATTTCATTTTACCAGTTGTTTTCTCTGTGAAGTTCCG,Distal Intergenic,13,71957921,71963723,5803,2,Irx1-201,-65108,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,8,16371,ENSMUSG00000060969,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21598,cg16113572,0.0000299,0.0000106,2.82626099,0.005015358,gain,ns,-0.0000282,0.000018,-1.567091453,0.118113484,neg,ns,-0.002002024,0.005273933,-0.37960733,0.704496832,neg,ns,0.152120955,0.000110383,0.00018137,0.608604578,0.543232254,pos,ns,0.581153492,Zfhx3,Zfhx3_Intron,8,108496192,108496241,108496240,108496241,50,+,TGACATTTCTGCAGTTTCATCAGAAATTCTAAATAATCCATGTGAAAACG,"Intron (Zfhx3-204/Zfhx3, intron 3 of 15)",8,107942644,108961630,1018987,1,Zfhx3-204,553548,Zfhx3-204,Zfhx3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,114,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20723,cg05531691,-0.0000144,0.00000678,-2.124945754,0.034381939,loss,ns,0.0000181,0.0000115,1.566983518,0.118138714,pos,ns,-0.003200264,0.003375383,-0.948118794,0.343807484,neg,ns,0.463684673,0.000136698,0.000116079,1.17762711,0.239848583,pos,ns,0.869346345,Rnf219,Rnf219_Intron,14,104649393,104649442,104649441,104649442,50,-,GCAGCAATATTTAGCACATGCTTGGGCAACCTTGTTTGAAATCCATGCCG,"Intron (D130009I18Rik-201/D130009I18Rik-201, intron 2 of 4)",14,104502386,104522645,20260,2,Rnf219-202,-126797,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,7,72486,ENSMUSG00000022120,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15466,cg22242857,0.0000275,0.0000203,1.357801595,0.175514144,gain,ns,0.000054,0.0000344,1.566969132,0.118142077,pos,ns,0.018606407,0.010087869,1.844433919,0.066073879,pos,ns,1.179970194,-0.000469081,0.000346921,-1.352126504,0.177320446,neg,ns,0.541306114,Sall3,Sall3_Exon,18,80974711,80974760,80974759,80974760,50,-,ATCAATATTTTTTATTTTGTACAAATTACCCCACTTCGACATTTCTGACG,"Exon (Sall3-202/Sall3, exon 1 of 3)",18,80966376,80986771,20396,2,Sall3-201,12011,Sall3-201;Sall3-203;Sall3-202,Sall3;Sall3;Sall3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,10,20689,ENSMUSG00000024565,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
6989,cg09004957,0.0000422,0.00000619,6.810586301,5.05E-11,gain,yes,-0.0000165,0.0000105,-1.566943785,0.118148002,neg,ns,0.000488764,0.003082677,0.158551756,0.874125278,pos,ns,0.058426321,0.0000351,0.000106013,0.330775788,0.741037308,pos,ns,0.613857595,Gramd1b,Gramd1b_fiveUTR,9,40375899,40375948,40375947,40375948,50,+,CCTCCTCTACTTACCAGGAGAGCTTGAATCCTTTCATTAGTACAGTCACG,5' UTR,9,40293233,40455764,162532,2,Gramd1b-201,79816,Gramd1b-201;Gramd1b-214;Gramd1b-203;Gramd1b-212;Gramd1b-213;Gramd1b-202;Gramd1b-206;Gramd1b-210;Gramd1b-208;Gramd1b-205,Gramd1b;Gramd1b;Gramd1b;Gramd1b;Gramd1b;Gramd1b;Gramd1b;Gramd1b;Gramd1b;Gramd1b,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,5,235283,ENSMUSG00000040111,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14971,cg12280932,-0.00000323,0.00000171,-1.891682531,0.059465196,loss,ns,-0.00000455,0.0000029,-1.566877098,0.118163593,neg,ns,-0.000363118,0.000849963,-0.427215537,0.669518921,neg,ns,0.174237145,0.0000101,0.0000292,0.345979664,0.729592683,pos,ns,0.945132589,Supt6,Supt6_Exon,11,78228704,78228753,78228752,78228753,50,-,TACTGATAAGCCTGCATCTTCTCAAACAGCCGTGTTAGGTTCTCTTTACG,"Exon (Supt6-201/Supt6, exon 11 of 37)",11,78206746,78245987,39242,2,Supt6-201,17234,Supt6-201,Supt6,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,7,20926,ENSMUSG00000002052,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16327,cg12101623,0.000000374,0.00000232,0.161371638,0.871905821,gain,ns,-0.00000616,0.00000393,-1.566803434,0.118180817,neg,ns,-0.004049666,0.001152543,-3.51367723,0.000507752,neg,ns,3.294348061,0.000113448,0.0000396,2.862247495,0.00449278,pos,ns,0.934116052,Exoc6b,Exoc6b_Exon,6,84746883,84746932,84746931,84746932,50,-,AAAAACACAAAGACTTACTTGTCTCAAGTCGATGAAGGCCAACTGCAGCG,"Exon (Exoc6b-203/Exoc6b, exon 20 of 22)",6,84618487,85069513,451027,2,Exoc6b-203,322581,Exoc6b-203,Exoc6b,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,8,75914,ENSMUSG00000033769,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2831,cg11066411,0.0000628,0.00000402,15.61989498,5.64E-41,gain,yes,-0.0000107,0.00000683,-1.566717435,0.118200928,neg,ns,0.006490034,0.002001889,3.241955608,0.001316375,pos,ns,2.880620241,0.0000231,0.0000688,0.335084239,0.737788169,pos,ns,0.081005236,Faxc,Faxc_Exon,4,21931665,21931714,21931713,21931714,50,-,GCCCTTCTCCTTTTATGGGGACATCATCGCTTTCCCTTTGCAGGATTACG,Promoter (<=1kb),4,21931329,21994146,62818,1,Faxc-204,336,Faxc-204;Faxc-201;Faxc-202;Faxc-203,Faxc;Faxc;Faxc;Faxc,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,76132,ENSMUSG00000028246,conserved gene and region,4,21931002,21931985,984,*,984,98,0.706300813,0.798767457,0.099593496,4.26E-74,CpGisland,TRUE,U3,Pr-B
16695,cg20657276,-0.00000389,0.00000126,-3.101368144,0.002103384,loss,ns,0.00000334,0.00000213,1.566649378,0.118216846,pos,ns,-0.000106535,0.000624628,-0.170557066,0.864683321,neg,ns,0.063142918,0.00000344,0.0000215,0.160102961,0.87290424,pos,ns,0.964512564,Ift43,Ift43_Intron,12,86153775,86153824,86153775,86153776,50,+,CGCCCATGATGCCACCTCAGTGGACTTGGGAACACAGATGAATCCTGTCA,"Intron (Ift43-201/Ift43, intron 4 of 7)",12,86082563,86162458,79896,1,Ift43-201,71212,Ift43-201;Ift43-205;Ift43-206;Ift43-207;Ift43-203;Ift43-202,Ift43;Ift43;Ift43;Ift43;Ift43;Ift43,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,5,76411,ENSMUSG00000007867,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5949,cg17229698,0.0000182,0.0000143,1.269747396,0.20512694,gain,ns,-0.0000381,0.0000243,-1.566628765,0.118221667,neg,ns,-0.00343128,0.007127138,-0.481438716,0.630544389,neg,ns,0.200284334,-0.000316539,0.000245102,-1.291458265,0.197506918,neg,ns,0.528952864,Slit3,Slit3_Intron,11,35544365,35544414,35544413,35544414,50,-,AGGCCTTTAGCTTAATGAAATTGTTTCAGTGACATGACGGTAAGAGCTCG,"Intron (Slit3-201/Slit3, intron 5 of 35)",11,35121224,35708507,587284,1,Slit3-201,423141,Slit3-201;Slit3-202,Slit3;Slit3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,21,20564,ENSMUSG00000056427,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
20179,cg09716124,0.0000191,0.00000489,3.905856234,0.000115284,gain,ns,-0.000013,0.00000831,-1.566318866,0.118294169,neg,ns,-0.004865509,0.002434613,-1.998473059,0.04653846,neg,ns,1.332187994,-0.00011595,0.0000837,-1.384875486,0.167086385,neg,ns,0.906553066,Eftud2,Eftud2_Exon,11,102851766,102851815,102851766,102851767,50,-,CGCCAAAGAACTTTTTGCAGACCAGCCTGAGCAAGGGGCGGATGTTCAGC,"Exon (Eftud2-201/Eftud2, exon 14 of 28)",11,102838473,102880967,42495,2,Eftud2-201,29152,Eftud2-201;Eftud2-202;Eftud2-212;Eftud2-207;Eftud2-204,Eftud2;Eftud2;Eftud2;Eftud2;Eftud2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,20624,ENSMUSG00000020929,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5401,cg04111974,-0.00000354,0.00000258,-1.372108444,0.171021736,loss,ns,-0.00000686,0.00000438,-1.566271238,0.118305315,neg,ns,-0.00046057,0.00128229,-0.359178167,0.71970633,neg,ns,0.142844678,-0.0000687,0.0000441,-1.558760094,0.12007345,neg,ns,0.961056592,Mvb12b,Mvb12b_Intron,2,33796215,33796264,33796263,33796264,50,+,CATGTCCCACTCTGCCATCTAAACACAGGCTTTTTGTTTCTTAAGTGACG,"Intron (Mvb12b-201/Mvb12b, intron 7 of 9)",2,33729953,33887946,157994,2,Mvb12b-201,91682,Mvb12b-201;Mvb12b-204,Mvb12b;Mvb12b,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,28,47,72543,ENSMUSG00000038740,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
693,cg00590051,-0.0000533,0.00000938,-5.684271051,3.03E-08,loss,yes,0.000025,0.0000159,1.566184679,0.118325573,pos,ns,-0.001140106,0.004670906,-0.244086595,0.807325218,neg,ns,0.092951482,-0.000217216,0.000160632,-1.352258758,0.177278193,neg,ns,0.649664618,Gm49535,Gm49535_Intergenic_upstream,16,8117807,8117856,8117807,8117808,50,+,CGGGTGTTTGTTCCCTTGTGTGTGTCAGGGAATTTGGAACTGACCTCAAG,Distal Intergenic,16,8103374,8103788,415,2,Gm49535-201,-14019,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,5,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1257,cg19859853,0.0000529,0.0000201,2.627656173,0.009025254,gain,ns,0.0000536,0.0000342,1.565913974,0.118388948,pos,ns,0.04148067,0.010023146,4.138487855,0.0000451,pos,ns,4.345881296,-0.001271615,0.000344695,-3.689100083,0.000265718,neg,ns,0.246392832,Bcor,Bcor_Exon,X,12136918,12136967,12136966,12136967,50,-,GTTAACAGGCAGTTGCAATCAGTTTCCGAAAGGTCAGCCAAGGTCCTCCG,"Exon (Bcor-208/Bcor, exon 3 of 5)",20,12036743,12160355,123613,2,Bcor-201,23388,Bcor-201;Bcor-208,Bcor;Bcor,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,74,71458,ENSMUSG00000040363,conserved gene but different region,X,12136836,12137187,352,*,352,27,0.613636364,0.817337461,0.076704546,1.07E-17,CpGisland,TRUE,NA,NRS
3010,cg08474267,0.00000642,0.0000033,1.945501715,0.052618313,gain,ns,-0.00000878,0.00000561,-1.565885136,0.118395701,neg,ns,-0.001517437,0.001642264,-0.923990898,0.356209704,neg,ns,0.448294254,0.0000443,0.0000565,0.784756999,0.433195342,pos,ns,0.921964818,Fbxl4,Fbxl4_Exon,4,22376578,22376627,22376626,22376627,50,-,TTTCCCATGTTAACAGTTCTGACCATGTTTTATTATATATGCCTTCGGCG,"Exon (Fbxl4-201/Fbxl4, exon 3 of 9)",4,22357543,22376725,19183,1,Fbxl4-202,19035,Fbxl4-202;Fbxl4-201;Fbxl4-205;Fbxl4-203;Fbxl4-204,Fbxl4;Fbxl4;Fbxl4;Fbxl4;Fbxl4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,269514,ENSMUSG00000040410,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12758,cg20242875,0.0000195,0.00000385,5.068988815,0.000000689,gain,yes,-0.0000102,0.00000653,-1.565812659,0.118412673,neg,ns,0.001954188,0.001914084,1.020951944,0.308073285,pos,ns,0.511345961,-0.00000985,0.0000658,-0.149667184,0.881124525,neg,ns,0.076716478,Phox2b,Phox2b_Exon,5,67098708,67098757,67098756,67098757,50,+,GTACGGACTGCTCTGGTGGTCCCTGAGGGTGCCCAGGCTGCAGGATCCCG,Promoter (<=1kb),5,67094399,67099301,4903,2,Phox2b-201,544,Phox2b-201;Phox2b-202,Phox2b;Phox2b,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,28,18935,ENSMUSG00000012520,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
11602,cg07172031,-0.0000148,0.000014,-1.061990382,0.289066674,loss,ns,-0.0000372,0.0000238,-1.565393575,0.118510853,neg,ns,0.045053962,0.006958299,6.474853234,3.71E-10,pos,ns,9.430306354,-0.001879126,0.000239295,-7.8527488,6.71E-14,neg,yes,0.762135565,Arih1,Arih1_Exon,9,59436847,59436896,59436847,59436848,50,+,CGAGACTTTTTACTTGGATTAATTACATGACACTCAGCAAAGAGCTTCTC,"Exon (Arih1-207/Arih1, exon 3 of 14)",9,59388258,59486614,98357,2,Arih1-207,49718,Arih1-207;Arih1-201;Arih1-202;Arih1-204;Arih1-205,Arih1;Arih1;Arih1;Arih1;Arih1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,13,23806,ENSMUSG00000025234,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13588,cg04512256,-0.0000228,0.000007,-3.260814928,0.001234606,loss,ns,0.0000186,0.0000119,1.565336978,0.118524117,pos,ns,-0.00352375,0.003484267,-1.01133177,0.312646368,neg,ns,0.504946612,-0.000159048,0.000119824,-1.327351812,0.18536903,neg,ns,0.811040506,Gm9192,Gm9192_Intergenic_downstream,14,71462793,71462842,71462793,71462794,50,+,CGGCAGAAAATTGGCAAGGCTTAATAAACCTCATGCCTGACGCACTCCTG,Distal Intergenic,14,71819567,71820551,985,2,Gm9192-201,357709,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,3,668477,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12528,cg27105924,-0.00000487,0.00000246,-1.976098165,0.04902998,loss,ns,0.00000655,0.00000418,1.565240854,0.118546647,pos,ns,0.000431296,0.00122577,0.351857527,0.725184168,pos,ns,0.139551686,-0.0000466,0.0000422,-1.106109519,0.269536757,neg,ns,0.94428719,Gm13578,Gm13578_Intergenic_upstream,2,64882791,64882840,64882791,64882792,50,+,CGAAAGCCATCTCAGGTCTCTGGAAATGGCAGAGAGTGAATAATTAAGAT,Distal Intergenic,2,64867999,64868588,590,2,Gm13578-201,-14203,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,10,667291,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20361,cg19182597,-0.00000358,0.00000712,-0.503450583,0.61500506,loss,ns,-0.0000189,0.0000121,-1.565180963,0.118560687,neg,ns,-0.010976654,0.003542435,-3.098618241,0.002122403,neg,ns,2.673172118,0.000232827,0.000121824,1.911170824,0.056904682,pos,ns,0.075088809,Hoxc5,Hoxc5_fiveUTR,15,103013844,103013893,103013844,103013845,50,+,CGCCGGCTTCCATCACTAACCTCCCGGAGGTCATCAAGCCAAATTTATGA,5' UTR,15,102967443,103015676,48234,1,Hoxc5-202,46401,Hoxc5-202;Hoxc5-201;Hoxc6-202;Hoxc6-203;Hoxc6-201,Hoxc5;Hoxc5;Hoxc6;Hoxc6;Hoxc6,0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,13,134,15424,ENSMUSG00000022485,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
25992,cg10612961,-0.00000504,0.00000466,-1.082621239,0.279817952,loss,ns,0.0000124,0.00000792,1.565068359,0.118587086,pos,ns,0.003304543,0.002318856,1.425074669,0.155141627,pos,ns,0.809271659,-0.000157165,0.0000797,-1.970837647,0.04963182,neg,ns,0.862398501,Tmem164,Tmem164_Exon,X,142834254,142834303,142834254,142834255,50,-,CGCATCTGGGCCTCGGGACACCAGACTCTCATGACCATGACCCACGGGAA,"Exon (Tmem164-204/Tmem164, exon 6 of 7)",20,142681406,142843494,162089,1,Tmem164-204,152848,Tmem164-204;Tmem164-202;Tmem164-205;Tmem164-201;Tmem164-206;Tmem164-208;Tmem164-209;Tmem164-203,Tmem164;Tmem164;Tmem164;Tmem164;Tmem164;Tmem164;Tmem164;Tmem164,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,15,209497,ENSMUSG00000047045,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18477,cg27521727,-0.0000101,0.00000154,-6.567765159,2.15E-10,loss,yes,0.0000041,0.00000262,1.565013447,0.118599962,pos,ns,0.001543406,0.000768116,2.009340342,0.045367516,pos,ns,1.343255002,-0.0000437,0.0000264,-1.655943326,0.098745147,neg,ns,0.965538411,Zc3h12b,Zc3h12b_threeUTR,X,95926619,95926668,95926619,95926620,50,+,CGGTGGCTGATGAGCTCCGCATCAGTGCCAAACTGTCCACAGTGAAAACT,3' UTR,20,95899033,95928230,29198,1,Zc3h12b-201,27586,Zc3h12b-204;Zc3h12b-201;Zc3h12b-203;Zc3h12b-202,Zc3h12b;Zc3h12b;Zc3h12b;Zc3h12b,214941;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,3,547176,ENSMUSG00000035045,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10097,cg06423328,0.000244323,0.0000228,10.70806182,5.63E-23,gain,yes,-0.0000607,0.0000388,-1.565004814,0.118601986,neg,ns,0.035077015,0.011356103,3.088825149,0.00219143,pos,ns,2.659272387,-0.001104882,0.000390535,-2.829147673,0.004971486,neg,ns,0.336415449,Gm28308,Gm28308_Intron,6,52172794,52172843,52172794,52172795,50,+,CGCGGTGAGGGCTCCGCGCAAATCCATCTTACTCTCAATAGCTAAGTGAC,"Intron (Gm28308-201/Gm28308, intron 3 of 3)",6,52163359,52213339,49981,2,Gm28308-201,40496,Gm28308-201;Hoxa3-201;Hoxa3-202,Gm28308;Hoxa3;Hoxa3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,46,103,,NA,mapped to different genes,6,52172418,52172811,394,*,394,37,0.634517767,0.944844125,0.093908629,2.37E-27,CpGisland,TRUE,U3,Pr-B
18741,cg24196036,-0.00000372,0.00000601,-0.619884126,0.535789444,loss,ns,-0.000016,0.0000102,-1.564995978,0.118604058,neg,ns,-0.001579028,0.002989355,-0.528217113,0.597726569,neg,ns,0.223497439,-0.000171841,0.000102804,-1.671543473,0.095623448,neg,ns,0.912950503,Gm9287,Gm9287_Intergenic_downstream,14,97086703,97086752,97086703,97086704,50,-,CGGCTGGAAAAGTTACCATACATTGTAGGAACAATTACCCAAATCTTCAC,Distal Intergenic,14,96967825,96969754,1930,1,Gm9287-201,118927,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,6,668654,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12017,cg20697952,-0.0000125,0.0000072,-1.734182537,0.083879799,loss,ns,-0.0000191,0.0000122,-1.564979685,0.118607879,neg,ns,-0.007019778,0.003583991,-1.958648219,0.051050337,neg,ns,1.292001391,-0.000148093,0.000123253,-1.201535481,0.230460681,neg,ns,0.068310317,Anp32a,Anp32a_Exon,9,62341534,62341583,62341582,62341583,50,+,CGGAACAGGACGCCCTCTGATGTGAGCATTTGCCAAAAATATCTCTGTCG,Promoter (<=1kb),9,62341293,62377701,36409,1,Anp32a-207,241,Anp32a-207;Anp32a-201;Anp32a-203;Anp32a-205;Anp32a-210;Anp32a-208;Anp32a-202,Anp32a;Anp32a;Anp32a;Anp32a;Anp32a;Anp32a;Anp32a,0;0;0;0;-881;-2480;-3216,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,9,11737,ENSMUSG00000032249,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
8550,cg07349648,0.0000452,0.0000195,2.313466123,0.021351043,gain,ns,-0.0000519,0.0000332,-1.5647518,0.118661327,neg,ns,0.019513317,0.009713899,2.008803764,0.04542474,pos,ns,1.342707546,-0.000602922,0.00033406,-1.804830345,0.072071515,neg,ns,0.287028923,Btrc,Btrc_Intron,19,45329955,45330004,45329955,45329956,50,+,CGAGCTAATTCTGTCTATATAAAAGCAGTAATGAAATTCACGGCAGGATT,"Intron (Gm28578-208/Gm28578-208, intron 3 of 6)",19,45363734,45507736,144003,1,Btrc-204,-33730,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,63,98,12234,ENSMUSG00000025217,conserved gene and region,19,45329908,45330151,244,*,244,14,0.471311475,1.056277056,0.057377049,8.59E-08,CpGisland,TRUE,NA,NRS
8349,cg02316994,-0.00000631,0.00000391,-1.612203836,0.107935154,loss,ns,0.0000104,0.00000665,1.564710712,0.118670966,pos,ns,0.002686293,0.001947886,1.379081293,0.168863846,pos,ns,0.772463322,-0.0001227,0.000067,-1.831681331,0.067958343,neg,ns,0.910922661,Zeb2,Zeb2_Intron,2,45036701,45036750,45036701,45036702,50,-,CGATGCCAGAACATATTACTGTACATTCTGTTAATAACAGTTAAGCGTAA,"Intron (Zeb2-212/Zeb2, intron 3 of 10)",2,44983632,45117395,133764,2,Zeb2-212,80645,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-218;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3747,cg06501452,-0.0000034,0.00000499,-0.680492275,0.496700727,loss,ns,0.0000133,0.00000848,1.564638745,0.118687851,pos,ns,0.006827133,0.002484568,2.747815103,0.006350682,pos,ns,2.197179608,-0.000249624,0.0000854,-2.92148781,0.003739498,neg,ns,0.917373893,AW554918,AW554918_Intron,18,25241177,25241226,25241225,25241226,50,+,CATTTCTAAACAGTGATGTTTCTGTCAGCCTTGGAAATAGTGTCTTTACG,"Intron (AW554918-204/AW554918, intron 4 of 8)",18,25168999,25463725,294727,1,AW554918-204,72178,AW554918-204;AW554918-201;AW554918-207;AW554918-202;AW554918-208;AW554918-205;AW554918-203,AW554918;AW554918;AW554918;AW554918;AW554918;AW554918;AW554918,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,3,225289,ENSMUSG00000033632,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26488,cg18987102,0.00000793,0.00000829,0.957017966,0.339303925,gain,ns,0.000022,0.0000141,1.564509875,0.11871809,pos,ns,-0.007050346,0.004123635,-1.70974068,0.088314489,neg,ns,1.05396804,0.000498442,0.000141811,3.5148204,0.000505656,pos,ns,0.813187703,Casz1,Casz1_Intergenic_upstream,4,148790846,148790895,148790894,148790895,50,-,ACAGCTCACTAATTAATTAGCGCTTAAGTACTTAGCATCCTCCTGCATCG,Distal Intergenic,4,148804429,148954889,150461,1,Casz1-202,-13583,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,14,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1196,cg20969704,-0.00000738,0.00000621,-1.186962737,0.2361511,loss,ns,0.0000165,0.0000106,1.564505179,0.118719192,pos,ns,0.014226585,0.003092716,4.600029509,0.00000616,pos,ns,5.210127391,-0.000440621,0.000106358,-4.142800849,0.0000443,neg,ns,0.843942271,Bcor,Bcor_threeUTR,X,12036998,12037047,12036998,12036999,50,+,CGGTTTGATGCGTGAAAACTAATTTCACAGCTTTTAAATTAGGATATAAA,3' UTR,20,12036740,12080553,43814,2,Bcor-202,43506,Bcor-202;Bcor-203;Bcor-204;Bcor-206;Bcor-201,Bcor;Bcor;Bcor;Bcor;Bcor,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,74,71458,ENSMUSG00000040363,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19399,cg22450874,-0.000000357,0.00000526,-0.067754861,0.946024456,loss,ns,0.000014,0.00000894,1.564472811,0.118726788,pos,ns,0.012025059,0.002618769,4.591874343,0.00000639,pos,ns,5.194226305,-0.000350827,0.0000901,-3.895510204,0.000120076,neg,ns,0.861654685,Foxp1,Foxp1_Intron,6,99233038,99233087,99233038,99233039,50,+,CGCCAAAGTGCAACATGTAAGTAAATCAAAGCTTTGATGCTCTATTTTGC,"Intron (Foxp1-206/Foxp1, intron 2 of 17)",6,98925338,99266515,341178,2,Foxp1-206,33428,Foxp1-206;Foxp1-204;Foxp1-220;Foxp1-221;Foxp1-222;Foxp1-223;Foxp1-202;Foxp1-211;Foxp1-212;Foxp1-224,Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,87,108655,ENSMUSG00000030067,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27462,cg18974826,0.00000175,0.00000683,0.256480107,0.797750265,gain,ns,-0.0000181,0.0000116,-1.564417927,0.118739669,neg,ns,0.0002035,0.003397389,0.059898982,0.952274686,pos,ns,0.02123776,-0.0000817,0.000116836,-0.699227755,0.484934002,neg,ns,0.871470422,Pbx1,Pbx1_Intron,1,168300205,168300254,168300253,168300254,50,-,TGTAATAAGCATCTCTGTTCCGGCATGTTGCGAAAGCCCATTACCTCCCG,"Intron (Pbx1-208/Pbx1, intron 2 of 7)",1,168119364,168432270,312907,2,Pbx1-208,132016,Pbx1-208;Pbx1-205;Pbx1-206;Pbx1-201;Pbx1-202;Pbx1-204,Pbx1;Pbx1;Pbx1;Pbx1;Pbx1;Pbx1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,84,18514,ENSMUSG00000052534,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19637,cg07404009,-0.0000269,0.00000767,-3.503867498,0.000526081,loss,ns,-0.0000204,0.000013,-1.564320951,0.118762431,neg,ns,-0.004891571,0.003819384,-1.280722397,0.201248541,neg,ns,0.69626726,-0.000209194,0.000131348,-1.592666187,0.112254202,neg,ns,0.824758869,Gm28267,Gm28267_Intergenic_upstream,9,100210949,100210998,100210997,100210998,50,+,TATTGACATCAAAATACAGTGCCCTCAACCTGATAAACATGGAGGGCTCG,Distal Intergenic,9,100404495,100404759,265,1,Gm28267-201,-193497,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,29,29,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3922,cg20434856,-0.000131473,0.0000226,-5.809585864,1.55E-08,loss,yes,0.0000601,0.0000384,1.564196623,0.118791619,pos,ns,0.049907158,0.01126332,4.430945454,0.000013,pos,ns,4.885051486,-0.002864999,0.000387345,-7.396510779,1.32E-12,neg,yes,0.484426787,Myo10,Myo10_fiveUTR,15,25774157,25774206,25774157,25774158,50,+,CGGGCACTTTTTAAAGCACAGGAATGGTGTTCATTATTGTTCCATGTCTT,5' UTR,15,25622525,25813673,191149,1,Myo10-202,151632,Myo10-202;Myo10-211;Myo10-210;Myo10-201;Myo10-209;Myo10-208;Myo10-203;Myo10-213;Myo10-204,Myo10;Myo10;Myo10;Myo10;Myo10;Myo10;Myo10;Myo10;Myo10,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,2,17909,ENSMUSG00000022272,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24259,cg25989567,-0.00000112,0.00000113,-0.985481868,0.325155957,loss,ns,0.00000301,0.00000193,1.564043261,0.11882763,pos,ns,0.000938868,0.000564159,1.664191004,0.097084693,pos,ns,1.012849238,-0.0000352,0.0000194,-1.812852808,0.070821665,neg,ns,0.966116928,Sbno1,Sbno1_Exon,5,124392892,124392941,124392892,124392893,50,+,CGTTTTGATCCAAGACCTGATGCTAATAAGGCACTTTGAATAGAATCTGG,"Exon (Sbno1-201/Sbno1, exon 18 of 32)",5,124368702,124425914,57213,2,Sbno1-201,32973,Sbno1-201;Sbno1-216;Sbno1-202;Sbno1-208;Sbno1-209;Sbno1-217;Sbno1-212;Sbno1-204;Sbno1-205;Sbno1-203,Sbno1;Sbno1;Sbno1;Sbno1;Sbno1;Sbno1;Sbno1;Sbno1;Sbno1;Sbno1,0;0;0;-1984;-476;0;3316;0;4181;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,243272,ENSMUSG00000038095,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17139,cg07898297,0.000036,0.00000353,10.21957759,2.55E-21,gain,yes,0.00000937,0.00000599,1.563967099,0.118845517,pos,ns,0.005412851,0.00175561,3.083173038,0.002232204,pos,ns,2.651266066,-0.00000354,0.0000604,-0.058701383,0.953227779,neg,ns,0.07257442,Arl4c,Arl4c_Exon,1,88701124,88701173,88701172,88701173,50,+,TCAGGATCATCTCATAGAGCTTGTCCATGCCCTCGGTGAGGCCCTCGCCG,Promoter (<=1kb),1,88673125,88701876,28752,2,Arl4c-201,703,Arl4c-201;Arl4c-203;Arl4c-202,Arl4c;Arl4c;Arl4c,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,320982,ENSMUSG00000049866,conserved gene and region,1,88700885,88702514,1630,*,1630,169,0.66196319,0.948725367,0.103680982,1.91E-130,CpGisland,TRUE,U3,Pr-B
23527,cg11828445,-0.00000913,0.00000631,-1.447168187,0.148860273,loss,ns,0.0000168,0.0000107,1.563879589,0.118866072,pos,ns,0.00862371,0.00314054,2.745932338,0.006386356,pos,ns,2.194746906,-0.000224023,0.000108003,-2.074228567,0.038883201,neg,ns,0.897994994,Rbfox3,Rbfox3_Exon,11,118793709,118793758,118793709,118793710,50,+,CGTTAGGTACCAGCCTCCTGGCAATCTGAACATCTGTTCCCGTTAGAAAA,"Exon (Gm11750-201/Gm11750-201, exon 4 of 4)",11,118489762,118909550,419789,2,Rbfox3-205,115792,Rbfox3-205;Rbfox3-201;Rbfox3-202;Rbfox3-204;Rbfox3-206,Rbfox3;Rbfox3;Rbfox3;Rbfox3;Rbfox3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,13,52897,ENSMUSG00000025576,conserved gene but different region,11,118793647,118793750,104,*,104,10,0.721153846,0.740740741,0.096153846,0.000000092,CpGisland,TRUE,U15,NS
21452,cg24429861,0.0000256,0.00000413,6.182760137,1.98E-09,gain,yes,0.000011,0.00000702,1.563802469,0.118884189,pos,ns,0.008151701,0.002057642,3.961670532,0.0000924,pos,ns,4.034305751,-0.000174219,0.0000708,-2.462030795,0.014359212,neg,ns,0.067374934,Cacng4,Cacng4_Promoter,11,107793771,107793820,107793771,107793772,50,+,CGGCCCCGCCCCAGGATGGCCAGTTCCCATAGCAATAGCACAGACACCGG,Promoter (<=1kb),11,107732357,107794557,62201,2,Cacng4-201,737,Cacng4-201,Cacng4,0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,3,8,54377,ENSMUSG00000020723,conserved gene and region,11,107793647,107794919,1273,*,1273,155,0.743912019,0.885336743,0.121759623,7.27E-132,CpGisland,TRUE,U3,Pr-B
13123,cg19271096,-0.0000112,0.0000186,-0.60601382,0.544949043,loss,ns,-0.0000493,0.0000315,-1.563756335,0.118895028,neg,ns,0.050805048,0.009236752,5.500315201,7.94E-08,pos,ns,7.100164864,-0.002066136,0.000317651,-6.504419554,3.12E-10,neg,yes,0.662804442,Tcf4,Tcf4_Intron,18,69535252,69535301,69535252,69535253,50,-,CGTTTGCTTGTAAATACTGAGTTTTTGAAATGTCACTGTAACACTGGAAA,"Intron (Tcf4-259/Tcf4, intron 6 of 6)",18,69343356,69564082,220727,1,Tcf4-259,191896,Tcf4-259;Tcf4-201;Tcf4-207;Tcf4-210;Tcf4-240;Tcf4-254;Tcf4-246;Tcf4-206;Tcf4-202;Tcf4-257;Tcf4-232;Tcf4-248;Tcf4-231;Tcf4-205;Tcf4-253;Tcf4-233;Tcf4-238;Tcf4-245;Tcf4-249;Tcf4-219;Tcf4-235;Tcf4-227;Tcf4-250;Tcf4-229;Tcf4-260;Tcf4-226;Tcf4-216;Tcf4-256;Tcf4-230;Tcf4-221;Tcf4-234;Tcf4-258;Tcf4-217;Tcf4-247;Tcf4-252;Tcf4-218;Tcf4-208;Tcf4-243;Tcf4-237;Tcf4-239;Tcf4-262,Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,42,66,21413,ENSMUSG00000053477,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13666,cg00359086,-0.0000162,0.00000478,-3.381979749,0.000811919,loss,ns,0.0000127,0.00000813,1.563727749,0.118901744,pos,ns,0.001584277,0.002381269,0.665307972,0.506348213,pos,ns,0.295550719,0.0000661,0.0000819,0.806786948,0.420407769,pos,ns,0.931494143,Polr1a,Polr1a_Exon,6,71967934,71967983,71967934,71967935,50,+,CGGTTTCAGTTCCTGCCACATGCATATTACCAGCAGGAGAAGTGCCTGAG,"Exon (Polr1a-201/Polr1a, exon 27 of 34)",6,71909061,71982475,73415,1,Polr1a-201,58873,Polr1a-201;Polr1a-203,Polr1a;Polr1a,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,20019,ENSMUSG00000049553,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21855,cg11725172,-0.0000109,0.00000572,-1.914337718,0.056497427,loss,ns,0.0000152,0.00000971,1.563725213,0.11890234,pos,ns,-0.00372832,0.002845829,-1.310099865,0.191131985,neg,ns,0.71866663,-0.0000118,0.0000979,-0.12069596,0.904010049,neg,ns,0.860372991,Gm1943,Gm1943_Exon,8,109252431,109252480,109252431,109252432,50,+,CGACAAGAGGAATCCATTATGCAAATCATGTCACTTTGCATAACGTCTCA,"Exon (D030068K23Rik-202/D030068K23Rik-202, exon 10 of 10)",8,109340691,109340864,174,2,Gm1943-201,88384,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,28,384864,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17728,cg23642327,-0.0000297,0.0000098,-3.032514003,0.002630098,loss,ns,-0.000026,0.0000167,-1.563576187,0.118937359,neg,ns,-0.007828267,0.004879755,-1.604233471,0.109680868,neg,ns,0.959869121,0.000121819,0.000167814,0.725916143,0.468437865,pos,ns,0.70042207,Gm47084,Gm47084_Intergenic_upstream,10,91501710,91501759,91501710,91501711,50,-,CGATTTTCTTAGTGTTCAGCAAAGTGGAATGTAATTTTAATTTGCAAGAA,Distal Intergenic,10,91448221,91448380,160,2,Gm47084-201,-53379,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19475,cg06473737,-0.0000225,0.00000839,-2.687370949,0.007590458,loss,ns,0.0000223,0.0000142,1.563513365,0.118952123,pos,ns,0.00549276,0.004174045,1.31593203,0.189169128,pos,ns,0.723149739,-0.000300526,0.000143545,-2.093597841,0.037108012,neg,ns,0.655756929,Pja1,Pja1_Intergenic_downstream,X,99390088,99390137,99390088,99390089,50,+,CGGGGGATAATTAGAGCTTCTTTGCGTACACAATCCCATATTGTTTATCC,Distal Intergenic,20,99466146,99470672,4527,2,Pja1-204,80535,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,17,18744,ENSMUSG00000034403,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
148,cg10194942,-0.0000014,0.000000988,-1.418826076,0.156954333,loss,ns,-0.00000262,0.00000168,-1.563144065,0.119038947,neg,ns,-0.000450384,0.000491922,-0.915559957,0.360609376,neg,ns,0.442962985,0.0000215,0.0000169,1.272053476,0.204307509,pos,ns,0.967878424,Kdm2a,Kdm2a_Exon,19,4351762,4351811,4351810,4351811,50,-,CAAACAGAGGTACCACCAAAGTCCACATGGAAGTCAGTATAGCAGCCTCG,"Exon (Kdm2a-201/Kdm2a, exon 8 of 21)",19,4314419,4398285,83867,2,Kdm2a-201,46474,Kdm2a-201;Kdm2a-202;Kdm2a-203;Kdm2a-205;Kdm2a-206;Kdm2a-204,Kdm2a;Kdm2a;Kdm2a;Kdm2a;Kdm2a;Kdm2a,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,21,30,225876,ENSMUSG00000054611,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19120,cg23667740,0.0000105,0.000015,0.702137005,0.483120568,gain,ns,0.0000399,0.0000255,1.563123005,0.1190439,pos,ns,-0.00401871,0.007471194,-0.537893969,0.591036199,neg,ns,0.228385919,0.000424788,0.000256934,1.653299476,0.099282213,pos,ns,0.590862926,Gm765,Gm765_Intron,6,98527066,98527115,98527066,98527067,50,+,CGTCCTTGACAGTATTAAAAGAAAGGTTTGAATTGTTGAATAACCACCTT,"Intron (Gm44196-202/Gm44196-202, intron 2 of 4)",6,98235708,98342754,107047,2,Gm765-201,-184312,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,10,330390,ENSMUSG00000090667,conserved gene but different region,6,98526876,98527067,192,*,192,12,0.453125,1.265934066,0.0625,0.000000379,CpGisland,TRUE,U15,NS
14474,cg23647082,-0.000000683,0.00000134,-0.509707767,0.610618877,loss,ns,0.00000356,0.00000228,1.562895083,0.119097512,pos,ns,0.001565668,0.000666819,2.347964025,0.019504645,pos,ns,1.709861942,-0.0000538,0.0000229,-2.346154869,0.019597874,neg,ns,0.973437583,Zc3h3,Zc3h3_Intron,15,75835199,75835248,75835247,75835248,50,+,TTAGCCCCCTTATCTGCTGAGCAATATAGTGGCAGGGCTGACCTCTTTCG,"Intron (Zc3h3-201/Zc3h3, intron 3 of 11)",15,75754430,75841915,87486,2,Zc3h3-201,6667,Zc3h3-201,Zc3h3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,18,223642,ENSMUSG00000075600,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13661,cg09989727,-0.000000348,0.00000104,-0.333255452,0.739166745,loss,ns,0.00000277,0.00000177,1.56268264,0.1191475,pos,ns,0.000834351,0.000519583,1.605809824,0.109333839,pos,ns,0.961245403,-0.0000261,0.0000179,-1.461747347,0.144823387,neg,ns,0.963662233,Tcf12,Tcf12_Exon,9,71868995,71869044,71869043,71869044,50,-,GTACCTCACAGACATCCTTTAAGAAGGACATTGCATCTTGCAAATGCTCG,"Exon (Tcf12-202/Tcf12, exon 15 of 21)",9,71842688,72111847,269160,2,Tcf12-202,242803,Tcf12-202;Tcf12-217;Tcf12-201;Tcf12-207;Tcf12-220;Tcf12-221;Tcf12-218;Tcf12-215;Tcf12-216;Tcf12-208;Tcf12-206,Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,12,21406,ENSMUSG00000032228,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2122,cg26822414,0.0000154,0.00000584,2.629545277,0.008976372,gain,ns,0.0000155,0.00000993,1.562611416,0.119164262,pos,ns,0.007207642,0.002909057,2.477656138,0.013757417,pos,ns,1.86146309,0.0000645,0.000100042,0.644950326,0.519436379,pos,ns,0.164360111,Bhlhe22,Bhlhe22_Promoter,3,18054093,18054142,18054093,18054094,50,+,CGCCACACATGTCAAGCTAAAGGCAGTTGTTGGGTTACTAACAGGACCCA,Promoter (<=1kb),3,18054174,18057517,3344,1,Bhlhe22-201,-32,Bhlhe22-201,Bhlhe22,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,6,22,59058,ENSMUSG00000025128,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
11208,cg16427848,0.0000152,0.000013,1.166064628,0.244484643,gain,ns,-0.0000346,0.0000222,-1.562257855,0.119247501,neg,ns,0.009053912,0.006492931,1.394426204,0.164187439,pos,ns,0.784660071,-0.000364882,0.000223291,-1.634108643,0.10325113,neg,ns,0.203789866,Gria1,Gria1_fiveUTR,11,57012063,57012112,57012063,57012064,50,+,CGGTTTCCTAGGCGCGGTAGTAGGTGCCAATTTCCCCAACAATATCCAGA,Promoter (<=1kb),11,57011387,57015291,3905,1,Gria1-203,676,Gria1-203;Gria1-201;Gria1-202;Gria1-204,Gria1;Gria1;Gria1;Gria1,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,13,14799,ENSMUSG00000020524,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23846,cg09058243,-0.0000062,0.00000976,-0.636021871,0.525231445,loss,ns,0.0000259,0.0000166,1.562101435,0.119284342,pos,ns,0.003569299,0.004855514,0.7351021,0.46283306,pos,ns,0.334575627,0.0000382,0.000166981,0.22885574,0.819131944,pos,ns,0.26062975,En1,En1_Promoter,1,120600319,120600368,120600367,120600368,50,-,GAAGAGTAATTAAAACCTATAAATTATCTTCCGCAGCCCTTCTCGAGGCG,Promoter (2-3kb),1,120602418,120607992,5575,1,En1-201,-2099,En1-201,En1,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,23,36,13798,ENSMUSG00000058665,conserved gene and region,1,120600297,120600444,148,*,148,15,0.540540541,1.38836773,0.101351351,7.56E-12,CpGisland,TRUE,U13,Hc-P
20045,cg26857408,-0.0000197,0.0000275,-0.718772631,0.472822443,loss,ns,-0.0000729,0.0000467,-1.561724556,0.119373143,neg,ns,-0.013974143,0.013671905,-1.022106545,0.307527433,neg,ns,0.512116137,0.000571983,0.000470176,1.216531277,0.224708027,pos,ns,0.625609159,Ubtf,Ubtf_Exon,11,102310935,102310984,102310983,102310984,50,-,CTTCCGCTGCTCCAGGGCCTTATGAATCCATTTCAGCCTCTTTTTGTCCG,"Exon (Ubtf-210/Ubtf, exon 8 of 21)",11,102304560,102319096,14537,2,Ubtf-210,8112,Ubtf-210;Ubtf-213;Ubtf-202;Ubtf-203;Ubtf-204;Ubtf-201;Ubtf-205;Ubtf-206;Ubtf-209;Ubtf-212;Ubtf-211;Ubtf-208;Ubtf-207,Ubtf;Ubtf;Ubtf;Ubtf;Ubtf;Ubtf;Ubtf;Ubtf;Ubtf;Ubtf;Ubtf;Ubtf;Ubtf,0;0;0;0;0;0;0;0;0;-1495;-1027;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,8,21429,ENSMUSG00000020923,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
13486,cg10841543,-0.00000199,0.00000153,-1.299734033,0.194657784,loss,ns,0.00000406,0.0000026,1.56171377,0.119375685,pos,ns,0.002233425,0.00076197,2.93112042,0.00362854,pos,ns,2.440268144,-0.0000521,0.0000262,-1.989240421,0.047553259,neg,ns,0.96228864,Adam10,Adam10_threeUTR,9,70778343,70778392,70778391,70778392,50,-,GGCACAAAGTCTTAGAATATTATTATGTGCCCCGTGTTCCCTGTTCTTCG,3' UTR,9,70678997,70778382,99386,1,Adam10-202,99346,Adam10-202;Adam10-201;Adam10-204,Adam10;Adam10;Adam10,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,3,11487,ENSMUSG00000054693,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27481,cg12370954,0.0000246,0.0000031,7.926795754,4.09E-14,gain,yes,-0.00000823,0.00000527,-1.561711875,0.119376132,neg,ns,-0.002895229,0.001544504,-1.874536303,0.061796757,neg,ns,1.209034317,0.000183635,0.0000531,3.457282588,0.00062189,pos,ns,0.938868686,Pbx1,Pbx1_Intron,1,168342113,168342162,168342113,168342114,50,-,CGAGATGAAATAAACATGAGGACTGTCAGCAGTGACAGCCTAAGCAAAGG,"Intron (Pbx1-208/Pbx1, intron 2 of 7)",1,168119364,168432270,312907,2,Pbx1-208,90108,Pbx1-208;Pbx1-205;Pbx1-206;Pbx1-201;Pbx1-202;Pbx1-204,Pbx1;Pbx1;Pbx1;Pbx1;Pbx1;Pbx1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,84,18514,ENSMUSG00000052534,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25188,cg24877750,-0.00000877,0.00000455,-1.926723547,0.054927978,loss,ns,0.0000121,0.00000773,1.561696633,0.119379724,pos,ns,0.004798866,0.002264182,2.119470042,0.034845339,pos,ns,1.457855301,-0.000137186,0.0000779,-1.761837988,0.079082293,neg,ns,0.908550907,Bmp2,Bmp2_threeUTR,2,133561888,133561937,133561888,133561889,50,-,CGAAAAGAAGTTGGGAAAACAAATATTTTAATCAGAGAATTATTCCTTAA,3' UTR,2,133552159,133562885,10727,1,Bmp2-201,9729,Bmp2-201,Bmp2,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,4,12156,ENSMUSG00000027358,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6252,cg13640160,-0.00000451,0.00000152,-2.964043016,0.003271634,loss,ns,0.00000403,0.00000258,1.561571523,0.119409216,pos,ns,0.000685339,0.000756708,0.905685399,0.365805766,pos,ns,0.436749453,-0.00000789,0.000026,-0.303064661,0.762043859,neg,ns,0.061180903,Pabpc1,Pabpc1_Exon,15,36608356,36608405,36608404,36608405,50,-,AGCGGCGGGTGATCATGTCCCTGCAGACCCGGATGGAGAGGATGGGCCCG,Promoter (<=1kb),15,36595661,36608973,13313,2,Pabpc1-201,568,Pabpc1-201;Pabpc1-210;Pabpc1-203;Pabpc1-208,Pabpc1;Pabpc1;Pabpc1;Pabpc1,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,4,18458,ENSMUSG00000022283,mapped to different genes,15,36607912,36608781,870,*,870,95,0.703448276,0.887688359,0.109195402,5.17E-76,CpGisland,TRUE,U1,Pr-A
13889,cg08539006,0.0000358,0.00000945,3.791822881,0.000179736,gain,ns,0.0000251,0.000016,1.561552205,0.11941377,pos,ns,0.002640645,0.004700964,0.56172417,0.574709842,pos,ns,0.240551365,0.000288553,0.000161666,1.784874214,0.075259441,pos,ns,0.159660649,Sp9,Sp9_Promoter,2,73269163,73269212,73269163,73269164,50,-,CGTTTGCTGAAAGCTATTCTCCTGAAAATTGCTTTAACTTTTAAAAGGGT,Promoter (2-3kb),2,73271925,73277471,5547,1,Sp9-201,-2762,Sp9-201;Sp9-202,Sp9;Sp9,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,6,21,381373,ENSMUSG00000068859,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
8389,cg23208122,-0.000000765,0.00000749,-0.102172436,0.918685863,loss,ns,-0.0000199,0.0000127,-1.561544064,0.119415689,neg,ns,-0.001460308,0.003728048,-0.391708568,0.695542686,neg,ns,0.157676212,-0.0000117,0.000128207,-0.090963497,0.927580344,neg,ns,0.787069194,Zeb2,Zeb2_Intron,2,45083254,45083303,45083254,45083255,50,+,CGTTCGTTTACATAGGAACACCTGCTTAGCATGATAGCAGATGTCAGTCA,"Intron (Zeb2-212/Zeb2, intron 3 of 10)",2,44983632,45117395,133764,2,Zeb2-212,34092,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23668,cg01606770,-0.00000193,0.00000101,-1.920116548,0.055760566,loss,ns,0.00000267,0.00000171,1.561496775,0.119426838,pos,ns,0.000875985,0.000501441,1.74693624,0.081638725,pos,ns,1.088103789,-0.0000226,0.0000172,-1.312938659,0.190174695,neg,ns,0.970608784,Ptbp2,Ptbp2_threeUTR,3,119719497,119719546,119719545,119719546,50,-,TCCAAATCTTAATTACAAACTAAGGATGGCAATATATATTTAAATGCACG,3' UTR,3,119718742,119783388,64647,2,Ptbp2-201,63842,Ptbp2-201;Ptbp2-213;Ptbp2-208;Ptbp2-206;Ptbp2-204;Ptbp2-211;Ptbp2-202,Ptbp2;Ptbp2;Ptbp2;Ptbp2;Ptbp2;Ptbp2;Ptbp2,0;0;0;0;0;4841;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,13,56195,ENSMUSG00000028134,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6132,cg27640306,-0.00000265,0.0000047,-0.563586368,0.573443111,loss,ns,0.0000125,0.00000799,1.561445313,0.119438972,pos,ns,0.004132239,0.00234003,1.765891114,0.078398401,pos,ns,1.105692795,-0.00010722,0.0000805,-1.332369306,0.183717442,neg,ns,0.908047174,Bzw2,Bzw2_Exon,12,36134899,36134948,36134899,36134900,50,-,CGAGTTTTGAACCGCTGGCCTGTTAGCACTGGCTTCTGATGCTTATTCAT,"Exon (Bzw2-201/Bzw2, exon 2 of 12)",12,36091835,36156825,64991,2,Bzw2-201,21877,Bzw2-201;Bzw2-205;Bzw2-204;Bzw2-210;Bzw2-203;Bzw2-207;Bzw2-208;Bzw2-209;Bzw2-202,Bzw2;Bzw2;Bzw2;Bzw2;Bzw2;Bzw2;Bzw2;Bzw2;Bzw2,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,3,66912,ENSMUSG00000020547,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14534,cg22244593,0.000113439,0.0000189,5.999870796,5.50E-09,gain,yes,-0.0000501,0.0000321,-1.561221522,0.119491749,neg,ns,0.012500042,0.009410198,1.32835063,0.185039377,pos,ns,0.732735843,0.000034,0.000323616,0.105210471,0.916276844,pos,ns,0.524089654,Nrip1,Nrip1_Intron,16,76358445,76358494,76358445,76358446,50,-,CGGGCACACAAATCAATCCATCAGCTCATAAAGGTGTGCTTTTTTAACCT,"Intron (Nrip1-202/Nrip1, intron 1 of 3)",16,76287400,76373827,86428,2,Nrip1-202,15333,Nrip1-202;Nrip1-201;Nrip1-208;Nrip1-207;Nrip1-205;Nrip1-203;Nrip1-206,Nrip1;Nrip1;Nrip1;Nrip1;Nrip1;Nrip1;Nrip1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,8,268903,ENSMUSG00000048490,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
1705,cg22245041,-0.000000726,0.00000357,-0.203509253,0.838870536,loss,ns,0.00000946,0.00000606,1.561169469,0.119504028,pos,ns,0.004907713,0.001775426,2.76424565,0.006046935,pos,ns,2.218464728,-0.000152284,0.0000611,-2.494133231,0.013147164,neg,ns,0.92990099,Ss18,Ss18_threeUTR,18,14637456,14637505,14637456,14637457,50,-,CGGTTGCTGATAACCGTAATCATTATGACCTACATCAATTCGACAAGAGA,3' UTR,18,14624198,14682766,58569,2,Ss18-202,45261,Ss18-202;Ss18-201;Ss18-210;Ss18-203;Ss18-206;Ss18-205;Ss18-212;Ss18-204;Ss18-209;Ss18-211,Ss18;Ss18;Ss18;Ss18;Ss18;Ss18;Ss18;Ss18;Ss18;Ss18,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,5,10,268996,ENSMUSG00000037013,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22606,cg26119404,0.0000286,0.0000125,2.291501485,0.02260479,gain,ns,-0.0000331,0.0000212,-1.561138383,0.119511361,neg,ns,-0.008599312,0.006211455,-1.384428066,0.167223133,neg,ns,0.776703643,0.0000894,0.000213611,0.418473884,0.675890437,pos,ns,0.644486289,Sox6,Sox6_Intergenic_downstream,7,115421149,115421198,115421149,115421150,50,-,CGAACCAAAGCAACATTTGCAGTAAAGATCATTTTTGGAATGAAAAATAA,Distal Intergenic,7,115512744,115597896,85153,2,Sox6-215,176747,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,57,20679,ENSMUSG00000051910,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12081,cg02861868,0.00000266,0.00000199,1.33894764,0.181568703,gain,ns,-0.00000527,0.00000337,-1.560970703,0.119550923,neg,ns,-0.001992538,0.000988474,-2.0157726,0.044686271,neg,ns,1.34982589,0.0000298,0.000034,0.876013423,0.381701014,pos,ns,0.963550536,Ccar1,Ccar1_Exon,10,62764365,62764414,62764365,62764366,50,-,CGACCAGCTGCTGCTTGTATCCTCGGGAGAGGGTTTCCCACTCTGAGCGG,"Exon (Ccar1-201/Ccar1, exon 14 of 25)",10,62743928,62792231,48304,2,Ccar1-201,27817,Ccar1-201;Ccar1-211;Ccar1-207;Ccar1-206;Ccar1-212;Ccar1-205;Ccar1-210;Gm48145-201,Ccar1;Ccar1;Ccar1;Ccar1;Ccar1;Ccar1;Ccar1;Gm48145,0;0;-898;0;-4016;0;0;2614,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,10,67500,ENSMUSG00000020074,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6685,cg13228882,-0.0000335,0.0000185,-1.811736657,0.070994478,loss,ns,0.000049,0.0000314,1.560489288,0.119664563,pos,ns,-0.01372841,0.009208282,-1.490876411,0.137010755,neg,ns,0.86324534,0.000313959,0.000316672,0.991431389,0.322248193,pos,ns,0.327113546,Arap3,Arap3_Intergenic_upstream,18,38015048,38015097,38015096,38015097,50,+,CTGAGTCATCGAGACCAGAGCTGTGGGTGGTGCTTTTGTCCTGATTTCCG,Distal Intergenic,18,37996312,37998969,2658,2,Arap3-203,-16079,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,10,106952,ENSMUSG00000024451,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6062,cg16657946,0.00000144,0.0000021,0.683156126,0.495018435,gain,ns,-0.00000557,0.00000357,-1.560443769,0.119675313,neg,ns,-0.002561625,0.001045806,-2.449427194,0.014861509,neg,ns,1.827937097,0.0000288,0.000036,0.800366924,0.424111167,pos,ns,0.943560963,Vps13b,Vps13b_Exon,15,35925297,35925346,35925345,35925346,50,-,ACCACAGGTATTTTACATGGAGCTGGACTTTCTCAGCTTCCCAAACAGCG,"Exon (Vps13b-201/Vps13b, exon 60 of 62)",15,35371160,35931229,560070,1,Vps13b-201,554137,Cox6c-204;Vps13b-201,Cox6c;Vps13b,9985;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,5,666173,ENSMUSG00000037646,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23920,cg11518941,0.0000238,0.0000072,3.302589323,0.00106998,gain,ns,0.0000191,0.0000122,1.560194818,0.119734116,pos,ns,0.01163452,0.003581159,3.248814568,0.001286072,pos,ns,2.890734614,-0.00021117,0.000123156,-1.714654836,0.087407935,neg,ns,0.156539128,Galnt2l,Galnt2l_Intron,8,121127545,121127594,121127545,121127546,50,-,CGGAAATTTTTCCAAATAAACACAGCTTGATTCAACTTGGGTGGGCGGAC,"Intron (Galnt2l-201/Galnt2l, intron 1 of 15)",8,119910841,124345722,4434882,1,Galnt2l-201,1216704,Foxl1-201;Galnt2l-201,Foxl1;Galnt2l,-346;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,28,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
13125,cg08884408,-0.0000177,0.00000867,-2.036957112,0.042503595,loss,ns,-0.000023,0.0000147,-1.560170749,0.119739803,neg,ns,-0.008020362,0.004315198,-1.858631181,0.064027045,neg,ns,1.193636544,-0.000256839,0.000148399,-1.730731674,0.084494711,neg,ns,0.833624475,Ikzf2,Ikzf2_threeUTR,1,69538742,69538791,69538790,69538791,50,+,AGGGGTCCCCTTTGGAATGAAAAGGCCTAGTGGAATGTGTGCTCCCCTCG,3' UTR,1,69531214,69685821,154608,2,Ikzf2-201,147030,Ikzf2-201;Ikzf2-207;Ikzf2-202;Ikzf2-204;Ikzf2-208;Ikzf2-209,Ikzf2;Ikzf2;Ikzf2;Ikzf2;Ikzf2;Ikzf2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,14,22779,ENSMUSG00000025997,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12886,cg14191999,-0.00000886,0.0000093,-0.952028371,0.341824281,loss,ns,0.0000247,0.0000158,1.560127868,0.119749934,pos,ns,0.000439368,0.004631092,0.094873526,0.92447658,pos,ns,0.034104087,-0.0000991,0.000159263,-0.62215962,0.534294239,neg,ns,0.508749406,Iqcj,Iqcj_Promoter,3,67892156,67892205,67892204,67892205,50,+,TTCTGATGCCTAGAGTGAGCTCAACTCAAAGGTTTCCAGCCTCACACTCG,Promoter (<=1kb),3,67892220,68056593,164374,1,Iqcj-201,-15,Iqcj-201;Iqschfp-201,Iqcj;Iqschfp,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,2,208426,ENSMUSG00000051777,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25879,cg09521449,0.0000121,0.0000154,0.784810239,0.433164167,gain,ns,-0.0000407,0.0000261,-1.560020618,0.119775277,neg,ns,-0.019526276,0.007642425,-2.554984407,0.011096672,neg,ns,1.954807245,0.000320991,0.000262822,1.22132458,0.22289116,pos,ns,0.679343197,Igsf21,Igsf21_Intron,4,140185114,140185163,140185162,140185163,50,-,GAAAAGTCATTTTTCAGCATTTGACACAAAGTCTCTTTCGCTCTCTAGCG,"Intron (Igsf21-201/Igsf21, intron 1 of 9)",4,140026846,140246784,219939,2,Igsf21-201,61621,Igsf21-201,Igsf21,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,3,230868,ENSMUSG00000040972,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24703,cg23402580,-0.00000555,0.00000749,-0.741195626,0.459135928,loss,ns,-0.0000198,0.0000127,-1.560000184,0.119780106,neg,ns,-0.011401508,0.003725874,-3.060089737,0.002406083,neg,ns,2.618689363,-0.000118046,0.000128132,-0.921281173,0.357620047,neg,ns,0.884783123,Zbtb39,Zbtb39_Exon,10,127742570,127742619,127742570,127742571,50,-,CGGGAGAATAAGGCCATGCCCTGCCAGGTGTGCAAGAAAGTTCTAGAGCC,"Exon (Zbtb39-201/Zbtb39, exon 2 of 2)",10,127739538,127747349,7812,1,Zbtb39-201,3032,Gpr182-201;Zbtb39-201,Gpr182;Zbtb39,9113;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,320080,ENSMUSG00000044617,conserved gene and region,10,127742449,127742571,123,*,123,13,0.62601626,1.148706897,0.105691057,1.50E-10,CpGisland,TRUE,U10,Tr-S
27824,cg11072070,-0.00000845,0.00000823,-1.026786456,0.30532154,loss,ns,-0.0000218,0.000014,-1.559941154,0.119794057,neg,ns,-0.014457922,0.004094362,-3.531178646,0.00047653,neg,ns,3.321909855,0.000144715,0.000140805,1.027767956,0.304860248,pos,ns,0.768793461,Esrrg,Esrrg_Intron,1,188154794,188154843,188154794,188154795,50,-,CGGATAAGCGCATGCTAACACAATATGATTGAGCTGTAAAATGGAACGCT,"Intron (Esrrg-203/Esrrg, intron 6 of 7)",1,187609029,188214386,605358,1,Esrrg-203,545765,Esrrg-203;Esrrg-201;Esrrg-202,Esrrg;Esrrg;Esrrg,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,60,26381,ENSMUSG00000026610,conserved gene and region,1,188154784,188154881,98,*,98,9,0.479591837,1.603636364,0.091836735,0.000000773,CpGisland,TRUE,U9,En-Pp
6690,cg11405133,0.00000221,0.00000453,0.488012931,0.625885663,gain,ns,0.000012,0.0000077,1.559878764,0.119808803,pos,ns,0.005523171,0.002256972,2.447160033,0.014953496,pos,ns,1.825257265,-0.00018014,0.0000776,-2.32087536,0.020942068,neg,ns,0.89627191,Gm12129,Gm12129_Intergenic_upstream,11,38035411,38035460,38035459,38035460,50,+,TTGTATAATGACTCTTGATTGCCAGCAGTATTTGATTTTTCAACCATTCG,Distal Intergenic,11,38219069,38220215,1147,1,Gm12129-201,-183609,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,11,276941,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9539,cg07005858,-0.00000285,0.00000329,-0.864847498,0.387791238,loss,ns,0.00000873,0.0000056,1.55987519,0.119809648,pos,ns,0.000779326,0.001639703,0.475284673,0.634918786,pos,ns,0.197281823,-0.000136706,0.0000564,-2.424318094,0.01590877,neg,ns,0.950249675,Grik2,Grik2_Intron,10,49244243,49244292,49244243,49244244,50,-,CGACTTGTGCCAGCAAGAGCTGTCACCCCCAGCAAAGAGTGGGACATGGT,"Intron (Grik2-207/Grik2, intron 13 of 16)",10,49094833,49788766,693934,2,Grik2-207,544474,Grik2-207;Grik2-203;Grik2-202;Grik2-205;Grik2-209;Grik2-204;Grik2-201;Grik2-208,Grik2;Grik2;Grik2;Grik2;Grik2;Grik2;Grik2;Grik2,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,12,14806,ENSMUSG00000056073,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24873,cg13451589,0.0000875,0.00000772,11.33874708,3.67E-25,gain,yes,-0.0000205,0.0000131,-1.559852408,0.119815033,neg,ns,0.007838173,0.003842217,2.040013041,0.042196341,pos,ns,1.374725212,0.0000578,0.000132134,0.437721457,0.661893027,pos,ns,0.168305583,Pitx2,Pitx2_Promoter,3,129199822,129199871,129199822,129199823,50,+,CGCCACTGTGCAGTGGAGTTTGGTGGAATCTCTGCTGACGTCACGTCACT,Promoter (<=1kb),3,129199878,129219590,19713,1,Pitx2-207,-7,Pitx2-207;Pitx2-201;Pitx2-203;Pitx2-205;Pitx2-204,Pitx2;Pitx2;Pitx2;Pitx2;Pitx2,0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,24,18741,ENSMUSG00000028023,mapped to different genes,3,129199725,129200162,438,*,438,41,0.682648402,0.804209584,0.093607306,3.45E-30,CpGisland,TRUE,U3,Pr-B
3338,cg01450764,-0.0000482,0.00000945,-5.100700194,0.000000591,loss,yes,0.0000251,0.0000161,1.559670788,0.11985797,pos,ns,-0.012012632,0.004705738,-2.552762539,0.011166205,neg,ns,1.952094417,0.000283402,0.00016183,1.751233435,0.08089471,pos,ns,0.827951495,Pus10,Pus10_Exon,11,23718558,23718607,23718558,23718559,50,-,CGGGGTGTGTGCTGCCAGGAAGGCCCTTTGCAATTGAGCTGGTGAATCCT,"Exon (Pus10-203/Pus10, exon 13 of 18)",11,23665674,23732876,67203,1,Pus10-203,52884,Pus10-203;Pus10-201;Pus10-202;Pus10-205;Pus10-206,Pus10;Pus10;Pus10;Pus10;Pus10,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,74467,ENSMUSG00000020280,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20365,cg02470595,0.00000871,0.0000088,0.989671639,0.323106471,gain,ns,-0.0000233,0.000015,-1.559429997,0.119914914,neg,ns,-0.014752352,0.0043814,-3.367040922,0.000855542,neg,ns,3.067758466,0.000284613,0.000150676,1.888905456,0.059837771,pos,ns,0.129282954,Hoxc5,Hoxc5_fiveUTR,15,103013910,103013959,103013910,103013911,50,+,CGTGACTCTATTTAAGGCTCCCTTATTTGGGAAGAGCGCATAGGATAAAG,5' UTR,15,102967443,103015676,48234,1,Hoxc5-202,46467,Hoxc4-202;Hoxc5-202;Hoxc5-201;Hoxc6-202;Hoxc6-203;Hoxc6-201,Hoxc4;Hoxc5;Hoxc5;Hoxc6;Hoxc6;Hoxc6,0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,13,134,15424,ENSMUSG00000022485,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
23321,cg04062948,0.0000031,0.00000559,0.554470871,0.579656423,gain,ns,0.0000148,0.0000095,1.55935408,0.119932872,pos,ns,0.003143006,0.00278459,1.128714064,0.259891193,pos,ns,0.585208438,0.00000646,0.0000958,0.067456794,0.946261544,pos,ns,0.927045745,Cdca7l,Cdca7l_Intron,12,117806341,117806390,117806341,117806342,50,-,CGCAGAAATCCAGCACAGCTGCAGGTGTTCCGATGACAATGTGGGAAGCA,"Intron (Cdca7l-202/Cdca7l, intron 1 of 4)",12,117804289,117870047,65759,1,Cdca7l-202,2052,Cdca7l-202,Cdca7l,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,7,217946,ENSMUSG00000021175,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2466,cg23398281,0.00000785,0.00000547,1.434382188,0.152471207,gain,ns,0.0000145,0.00000929,1.559344708,0.119935089,pos,ns,0.005171928,0.002722351,1.899801816,0.058386983,pos,ns,1.233683967,-0.0000563,0.0000936,-0.600882536,0.548357305,neg,ns,0.8835984,Gm4849,Gm4849_Intergenic_downstream,1,19699894,19699943,19699894,19699895,50,+,CGGATCGCCTTTCTTGCTGTACATGTTGTTAATCTGTGAAATGCAAATTC,Distal Intergenic,1,19330939,19333184,2246,1,Gm4849-201,368955,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,10,226901,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
968,cg22584556,0.000128795,0.0000178,7.234225105,3.69E-12,gain,yes,-0.0000472,0.0000302,-1.559046892,0.120005557,neg,ns,0.028952092,0.00886102,3.267354497,0.00120737,pos,ns,2.918159584,-0.001043223,0.00030473,-3.42343694,0.000701478,neg,ns,0.201923578,Qk,Qk_threeUTR,17,10209484,10209533,10209484,10209485,50,+,CGAACGGACAAGTGCCTCAGCTCGCTGCACTGACGACAGGCAAGCAAAGG,3' UTR,17,10202601,10319380,116780,2,Qk-204,109847,Qk-204;Qk-202;Qk-203;Qk-201;Qk-206;Qk-205,Qk;Qk;Qk;Qk;Qk;Qk,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,12,17,19317,ENSMUSG00000062078,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7338,cg06248107,-0.0000101,0.00000994,-1.015230892,0.310787479,loss,ns,0.0000263,0.0000169,1.558858171,0.120050229,pos,ns,0.005915489,0.00494803,1.195524156,0.232796024,pos,ns,0.633024442,-0.000317734,0.000170162,-1.867240447,0.062811662,neg,ns,0.417281797,Crtac1,Crtac1_Intron,19,42326431,42326480,42326431,42326432,50,-,CGAGCTGTGCGGGTCGATGGCACAGGCAATAAACACCCAGCACTGGCCCC,"Intron (Crtac1-203/Crtac1, intron 3 of 14)",19,42268287,42431785,163499,2,Crtac1-203,105305,Crtac1-203;Crtac1-201,Crtac1;Crtac1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,8,72832,ENSMUSG00000042401,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13500,cg24026497,-0.0000164,0.00000489,-3.358904745,0.00088021,loss,ns,-0.000013,0.00000831,-1.558831415,0.120056563,neg,ns,-0.004787384,0.002434125,-1.966777963,0.050100521,neg,ns,1.300157757,0.0000431,0.0000837,0.514330398,0.607387474,pos,ns,0.879216681,Gm49430,Gm49430_Intergenic_downstream,15,70918522,70918571,70918522,70918523,50,-,CGTAAAGTTCGATAATTGTCAGGGGAAGAATATAAGTGTAATAAAATGCA,Distal Intergenic,15,70961618,70962464,847,2,Gm49430-201,43942,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,3,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6304,cg19851967,-0.00000443,0.00000566,-0.783198563,0.43410844,loss,ns,0.000015,0.00000962,1.558806769,0.120062399,pos,ns,0.008894632,0.002817696,3.156703664,0.001752529,pos,ns,2.756334902,-0.0000968,0.0000969,-0.999020699,0.318563821,neg,ns,0.835681073,Tshz3,Tshz3_Intergenic_downstream,7,36785878,36785927,36785878,36785879,50,+,CGTCAGAAGGAGTTTAGTTTACAAAGATAGCAACTGAGCTATTAAAACCA,Distal Intergenic,7,36698217,36702113,3897,1,Tshz3-202,87661,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,21,58,243931,ENSMUSG00000021217,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18234,cg01444080,0.00000683,0.00000579,1.17865503,0.239439466,gain,ns,-0.0000153,0.00000984,-1.558753371,0.120075042,neg,ns,0.002069791,0.002882305,0.718102766,0.473234756,pos,ns,0.324923366,-0.000395841,0.0000991,-3.993461923,0.0000814,neg,ns,0.844087881,Ap3b1,Ap3b1_threeUTR,13,94565726,94565775,94565726,94565727,50,+,CGGGAACTGAAGCCTGTCCTGTCTCAGGGGTAACCTGCTTACATCTGGAC,3' UTR,13,94358960,94566317,207358,1,Ap3b1-201,206766,Ap3b1-201;Ap3b1-205;Ap3b1-203,Ap3b1;Ap3b1;Ap3b1,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,55,11774,ENSMUSG00000021686,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15603,cg11940021,-0.00000537,0.00000258,-2.084014418,0.03797747,loss,ns,0.00000683,0.00000438,1.558719962,0.120082952,pos,ns,-0.000225011,0.001283466,-0.175315209,0.860946416,neg,ns,0.065023878,-0.0000601,0.0000441,-1.361974818,0.174194692,neg,ns,0.955343867,Nfib,Nfib_Intergenic_downstream,4,82268649,82268698,82268697,82268698,50,+,GCCATATGTTTGAAACCCCTGCCCATAATGGCTGGCTGCGGTTACCAGCG,Distal Intergenic,4,82498544,82499316,773,2,Nfib-211,230618,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,66,18028,ENSMUSG00000008575,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3967,cg24079029,0.00000037,0.00000445,0.083086475,0.933836404,gain,ns,0.0000118,0.00000757,1.558592918,0.120113039,pos,ns,0.004355069,0.002216415,1.964916436,0.050316683,pos,ns,1.298287995,-0.000202697,0.0000762,-2.659291159,0.00823738,neg,ns,0.925469405,5730522E02Rik,5730522E02Rik_Intron,11,26043519,26043568,26043567,26043568,50,-,TCTGACATGACAATTAACATCTCTGTTATTCTGCAAGTAAAATTAAATCG,"Intron (5730522E02Rik-202/5730522E02Rik, intron 1 of 5)",11,25617668,26210569,592902,2,5730522E02Rik-202,167001,5730522E02Rik-202;5730522E02Rik-201;5730522E02Rik-204,5730522E02Rik;5730522E02Rik;5730522E02Rik,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,90,70626,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11666,cg10786483,0.0000308,0.00000845,3.644627267,0.000313878,gain,ns,0.0000224,0.0000144,1.558561018,0.120120594,pos,ns,0.006089202,0.004206196,1.447674334,0.148718693,pos,ns,0.827634441,-0.000184618,0.000144651,-1.276304604,0.202803209,neg,ns,0.21050035,Gm18161,Gm18161_Intergenic_downstream,19,59717922,59717971,59717970,59717971,50,-,ATCCGGCGTGTCTGCTGCTGGTTAACAAGGAAATCCTATGTCAATTATCG,Distal Intergenic,19,59540451,59540978,528,1,Gm18161-201,177520,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,8,100416590,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22353,cg18958610,0.00000263,0.00000331,0.795619652,0.426861924,gain,ns,0.00000876,0.00000562,1.558501386,0.120134718,pos,ns,0.003078517,0.001646135,1.870148547,0.062405477,pos,ns,1.204777293,-0.0000514,0.0000566,-0.907488621,0.36485335,neg,ns,0.933918135,Btbd10,Btbd10_Exon,7,113351802,113351851,113351802,113351803,50,-,CGAGGTCTACTATGCAATTTCCGATCCCAATTCTCTGGATCACTGGAGTT,"Exon (Btbd10-201/Btbd10, exon 4 of 11)",7,113315626,113369339,53714,2,Btbd10-201,17488,Btbd10-202;Btbd10-201;Btbd10-203;Btbd10-205,Btbd10;Btbd10;Btbd10;Btbd10,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,6,68815,ENSMUSG00000038187,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22048,cg08321983,0.0000125,0.00000496,2.522707129,0.012145722,gain,ns,-0.0000131,0.00000843,-1.558463874,0.120143604,neg,ns,0.000848337,0.00247018,0.343431168,0.73150691,pos,ns,0.135781567,-0.000071,0.0000849,-0.836034358,0.40377951,neg,ns,0.840733173,Fbrsl1,Fbrsl1_threeUTR,5,110378222,110378271,110378222,110378223,50,+,CGCGTGTTCAGCTCTTGCCTGAGCAGCTCGTGATCTACAAGAGAAAAAGA,3' UTR,5,110361754,110448503,86750,2,Fbrsl1-202,70232,Fbrsl1-202;Fbrsl1-205;Fbrsl1-201;Fbrsl1-203;Fbrsl1-206,Fbrsl1;Fbrsl1;Fbrsl1;Fbrsl1;Fbrsl1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,2,381668,ENSMUSG00000043323,conserved gene but different region,5,110378140,110378383,244,*,244,21,0.659836066,0.794418605,0.086065574,6.37E-15,CpGisland,TRUE,U10,Tr-S
9589,cg25529140,-0.0000256,0.00000729,-3.511866322,0.00051109,loss,ns,0.0000193,0.0000124,1.558452268,0.120146353,pos,ns,-0.006455895,0.003630018,-1.778474571,0.076305933,neg,ns,1.117441694,0.0000891,0.000124836,0.713935735,0.475804097,pos,ns,0.549582376,Arhgap36,Arhgap36_Intergenic_upstream,X,49448368,49448417,49448368,49448369,50,+,CGATTCCCAGGTATGGTGGTGACTGGCAACACAGGGTAAGATGTAGCTTT,Distal Intergenic,20,49463945,49496508,32564,1,Arhgap36-203,-15528,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,5,75404,ENSMUSG00000036198,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2718,cg21300535,0.0000126,0.00000558,2.260122935,0.024507244,gain,ns,-0.0000148,0.00000949,-1.558450757,0.120146711,neg,ns,0.012613797,0.002779289,4.538497812,0.00000812,pos,ns,5.090706438,-0.0000535,0.0000956,-0.559420758,0.57627854,neg,ns,0.795942799,Carm1,Carm1_threeUTR,9,21587846,21587895,21587846,21587847,50,-,CGCAGCCAACACGGGGATTGTCAATCACACCCACTCCCGGATGGGCTCCA,3' UTR,9,21546894,21589467,42574,1,Carm1-201,40952,Carm1-201;Carm1-203;Carm1-202;Carm1-209;Carm1-204;Carm1-206;Carm1-210;Carm1-205;Timm29-201;Yipf2-202;Yipf2-201;Yipf2-203;Yipf2-204,Carm1;Carm1;Carm1;Carm1;Carm1;Carm1;Carm1;Carm1;Timm29;Yipf2;Yipf2;Yipf2;Yipf2,0;0;0;0;0;0;0;0;-4827;4877;4933;4915;4921,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,2,59035,ENSMUSG00000032185,conserved gene but different region,9,21587805,21587974,170,*,170,11,0.623529412,0.66953097,0.064705882,0.000000972,CpGisland,TRUE,U10,Tr-S
11263,cg11742734,-0.00000289,0.00000259,-1.115835377,0.265356805,loss,ns,0.00000686,0.0000044,1.558232318,0.120198467,pos,ns,0.001984868,0.001289994,1.538664103,0.124906382,pos,ns,0.903415371,-0.000156372,0.0000444,-3.524835733,0.000487632,neg,ns,0.934715301,Arhgef6,Arhgef6_Exon,X,57243442,57243491,57243490,57243491,50,-,CAACTTAAACTCCACGGTTTTATAATTTGAGGAGGCTCCAAGGGTCCTCG,"Exon (Arhgef6-201/Arhgef6, exon 16 of 22)",20,57231485,57338729,107245,2,Arhgef6-201,95238,Arhgef6-205;Arhgef6-201;Arhgef6-202;Arhgef6-207,Arhgef6;Arhgef6;Arhgef6;Arhgef6,-2553;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,5,73341,ENSMUSG00000031133,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3626,cg26562677,0.0000174,0.00000713,2.436543388,0.015390992,gain,ns,0.0000189,0.0000121,1.558079414,0.120234705,pos,ns,0.005306744,0.003547746,1.49580736,0.135721187,pos,ns,0.867352351,-0.0000638,0.000122007,-0.522978848,0.601362559,neg,ns,0.838815267,Gm47909,Gm47909_Intergenic_downstream,14,24826959,24827008,24826959,24826960,50,+,CGCCTTGGGTAAAAAGCAATGCATACGTTTACAATATAAATGTGATTTAA,Distal Intergenic,14,25089939,25090406,468,2,Gm47909-201,263398,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,13,17,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10584,cg08942224,-0.00000015,0.00000201,-0.074283053,0.940833071,loss,ns,0.00000533,0.00000342,1.557382556,0.120399969,pos,ns,0.002927673,0.001001856,2.922250516,0.003730601,pos,ns,2.428221227,-0.0000968,0.0000345,-2.810987437,0.005253393,neg,ns,0.951049102,Gm5821,Gm5821_Intergenic_upstream,18,54580858,54580907,54580906,54580907,50,-,GCCAAAGGGGTAGTTGAATAATTGCATGCGATTATTGCACAGGCATGGCG,Distal Intergenic,18,54766132,54766380,249,1,Gm5821-201,-185274,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,4,545257,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27563,cg08309206,0.0000397,0.0000134,2.965742837,0.00325411,gain,ns,0.0000354,0.0000228,1.557020424,0.120485922,pos,ns,0.014824525,0.006665497,2.224068906,0.026863929,pos,ns,1.570830467,-0.000395861,0.000229226,-1.726948029,0.085173129,neg,ns,0.766782364,Mid1,Mid1_Exon,X,169927574,169927623,169927622,169927623,50,+,ACCGATGACCAGTTAATCTGTGCCTTGTGTAAACTGGTTGGGCGGCACCG,"Exon (Mid1-204/Mid1, exon 2 of 10)",20,169685199,169990795,305597,1,Mid1-206,242375,Mid1-206;Mid1-204;Mid1-201;Mid1-205;Mid1-202;Mid1-214;Mid1-215;Mid1-211,Mid1;Mid1;Mid1;Mid1;Mid1;Mid1;Mid1;Mid1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,8,17318,ENSMUSG00000035299,conserved gene and region,X,169927461,169927683,223,*,223,13,0.533632287,0.835928489,0.058295964,0.000000236,CpGisland,TRUE,NA,NRS
27742,cg24420607,0.0000262,0.00000292,8.986723124,2.56E-17,gain,yes,-0.00000772,0.00000496,-1.557009599,0.120488492,neg,ns,0.002393287,0.001452954,1.647187646,0.100532723,pos,ns,0.997692553,-0.0000687,0.00005,-1.374372509,0.170318812,neg,ns,0.081453374,Ythdf1,Ythdf1_Exon,2,180894096,180894145,180894144,180894145,50,+,GAATGCCAAGAGAGGCGCCTCCGCCGCTCCTTTCTCATGGAAATGGCCCG,"Exon (Mir124a-3-201/Mir124a-3-201, exon 1 of 1)",2,180911768,180920387,8620,2,Ythdf1-203,26242,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,228994,ENSMUSG00000038848,mapped to different genes,2,180892700,180894599,1900,*,1900,214,0.697368421,0.934712644,0.112631579,1.61E-173,CpGisland,TRUE,U3,Pr-B
18805,cg08023990,-0.00000189,0.00000251,-0.754319574,0.45122996,loss,ns,0.00000663,0.00000426,1.556892897,0.120516202,pos,ns,0.00257859,0.001247375,2.067212425,0.039543874,pos,ns,1.402920785,-0.000096,0.0000429,-2.236747444,0.026013687,neg,ns,0.950971858,Gk2,Gk2_Intron,5,97504238,97504287,97504238,97504239,50,+,CGGATGACTAATGTGTAGAATATTGCAATTAGTATAGCAAGGTACTTACA,"Intron (4930467D21Rik-202/4930467D21Rik-202, intron 3 of 4)",5,97455142,97457021,1880,2,Gk2-201,-47217,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,13,14626,ENSMUSG00000050553,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27319,cg12339478,-0.00000318,0.00000327,-0.973674251,0.330977445,loss,ns,-0.00000864,0.00000555,-1.556631384,0.120578315,neg,ns,0.000385564,0.001626886,0.236994746,0.812817401,pos,ns,0.090007007,-0.0000384,0.0000559,-0.686966864,0.49261718,neg,ns,0.933240635,Pcif1,Pcif1_Exon,2,164888465,164888514,164888465,164888466,50,+,CGGATCCGAGAGAAGCACCTTGCCATCCTCAAGGAAAACAACATCTCAGG,"Exon (Pcif1-201/Pcif1, exon 11 of 17)",2,164879357,164894454,15098,1,Pcif1-201,9108,Pcif1-201;Pcif1-203;Zfp335-201;Zfp335-203,Pcif1;Pcif1;Zfp335;Zfp335,0;4532;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,228866,ENSMUSG00000039849,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7015,cg25402449,-0.000059,0.0000152,-3.882864065,0.00012619,loss,ns,0.0000402,0.0000258,1.556585534,0.120589207,pos,ns,-0.017949915,0.007565018,-2.372752362,0.018265931,neg,ns,1.738358182,0.000173945,0.00026016,0.66860592,0.504244447,pos,ns,0.637370126,Lrp1b,Lrp1b_Exon,2,40628658,40628707,40628658,40628659,50,+,CGCAGTTAAAGTGCAAATCCCCTCATTCTGACAGTAGTGATCACAAGGGT,"Exon (Lrp1b-210/Lrp1b, exon 5 of 8)",2,40595248,42653624,2058377,2,Lrp1b-201,2024917,Lrp1b-201;Lrp1b-209;Lrp1b-206;Lrp1b-210,Lrp1b;Lrp1b;Lrp1b;Lrp1b,0;-1322;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,7,94217,ENSMUSG00000049252,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5516,cg16425031,0.000063,0.00000711,8.857902296,6.46E-17,gain,yes,-0.0000188,0.0000121,-1.556570829,0.120592701,neg,ns,-0.000444696,0.003539478,-0.125638727,0.900099346,neg,ns,0.045709554,0.000247337,0.000121722,2.031978143,0.043008271,pos,ns,0.753338097,Pbx3,Pbx3_threeUTR,2,34171988,34172037,34171988,34171989,50,-,CGTGAGTATTGTTCAGAGGTAGTAAGTGAGCACTCTAAGCTACAGAACAT,3' UTR,2,34171457,34372038,200582,2,Pbx3-202,200001,Pbx3-202;Pbx3-201;Pbx3-210;Pbx3-206;Pbx3-207;Pbx3-209,Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,82,18516,ENSMUSG00000038718,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17486,cg12579439,0.00000376,0.00000156,2.403361441,0.016832221,gain,ns,0.00000413,0.00000265,1.556534991,0.120601215,pos,ns,0.001803798,0.0007778,2.319104126,0.021039208,pos,ns,1.676970618,-0.0000706,0.0000267,-2.638040119,0.008759486,neg,ns,0.034874663,Nrxn1,Nrxn1_Exon,17,90455960,90456009,90456008,90456009,50,+,GCAGTCTCCAAACAGCAAATCACTGAAGCTCGGATGCAATGCAGAGGACG,"Exon (Nrxn1-226/Nrxn1, exon 1 of 1)",17,90033631,91088907,1055277,2,Nrxn1-202,632898,Gm10493-201;Nrxn1-202;Nrxn1-207;Nrxn1-216;Nrxn1-204;Nrxn1-217;Nrxn1-209;Nrxn1-201;Nrxn1-213;Nrxn1-206;Nrxn1-221;Nrxn1-208;Nrxn1-222;Nrxn1-218;Nrxn1-226,Gm10493;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,22,27,18189,ENSMUSG00000024109,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7618,cg25248530,-0.00000612,0.00000142,-4.310475429,0.0000219,loss,ns,0.00000376,0.00000241,1.556357115,0.120643484,pos,ns,0.00011417,0.000707116,0.161458311,0.871837619,pos,ns,0.059564396,-0.00000192,0.0000243,-0.078927571,0.937141156,neg,ns,0.041285689,Bend3,Bend3_fiveUTR,10,43479110,43479159,43479158,43479159,50,+,TGCAGCGGGGGCTCCTGTGTCCTTGTGCGGAAATGACACACGGAGTCCCG,Promoter (<=1kb),10,43479140,43515396,36257,1,Bend3-201,0,Bend3-202;Bend3-201,Bend3;Bend3,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,3,331623,ENSMUSG00000038214,conserved gene but different region,10,43478338,43480095,1758,*,1758,238,0.742889647,0.982341962,0.135381115,6.56E-215,CpGisland,TRUE,U1,Pr-A
12544,cg06681001,-0.0000198,0.0000135,-1.463899936,0.144234556,loss,ns,0.0000358,0.000023,1.556257414,0.120667181,pos,ns,0.012178253,0.006730445,1.809427433,0.071353115,pos,ns,1.146587061,-0.000507892,0.000231459,-2.1943021,0.028955438,neg,ns,0.738630075,Prpf39,Prpf39_threeUTR,12,65048105,65048154,65048153,65048154,50,+,TTTTTCAGAACTTTTGAGCATGCTGTTCTAGCTGCAGGAACAGATTTCCG,3' UTR,12,65036333,65063386,27054,1,Prpf39-201,11772,Prpf39-201;Prpf39-205;Prpf39-202;Prpf39-207;Prpf39-210;Prpf39-209;Prpf39-203;Prpf39-208;Prpf39-206;Prpf39-204,Prpf39;Prpf39;Prpf39;Prpf39;Prpf39;Prpf39;Prpf39;Prpf39;Prpf39;Prpf39,0;0;0;0;0;0;0;4113;-162;-2957,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,5,7,328110,ENSMUSG00000035597,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22016,cg25682014,0.000115163,0.00000971,11.85665978,5.40E-27,gain,yes,-0.0000257,0.0000165,-1.555947062,0.120740969,neg,ns,0.014244613,0.004834214,2.946624406,0.003456252,pos,ns,2.461394645,-0.000510302,0.000166248,-3.069519747,0.002333597,neg,ns,0.103134512,Calb2,Calb2_fiveUTR,8,110168097,110168146,110168145,110168146,50,+,GCCAGGTGCAGGTAAGGGGGCTGCTGCTGCGGGCCAGCCATGGCGAGCCG,Promoter (<=1kb),8,110137502,110168210,30709,2,Calb2-202,64,Calb2-202;Calb2-201,Calb2;Calb2,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,2,12308,ENSMUSG00000003657,conserved gene and region,8,110168095,110168407,313,*,313,33,0.702875399,0.86075,0.10543131,3.28E-26,CpGisland,TRUE,U13,Hc-P
3644,cg11666770,0.000240103,0.0000181,13.28420792,3.48E-32,gain,yes,-0.0000478,0.0000307,-1.555834341,0.120767778,neg,ns,0.026714032,0.008995757,2.969625663,0.003214403,pos,ns,2.492899694,-0.001039129,0.000309363,-3.358926039,0.000880145,neg,ns,0.101421293,Erfl,Erfl_Intron,7,24943195,24943244,24943195,24943196,50,-,CGCGCCGCTTGTCTCTTAATCTCCAGAGCGACCGATCGATTCGCTATTTC,"Intron (Erfl-201/Erfl, intron 1 of 5)",7,24927445,24944494,17050,2,Erfl-201,1250,Erfl-201,Erfl,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,36,,NA,mapped to different genes,7,24943025,24943315,291,*,291,30,0.656357388,0.97129506,0.103092784,1.48E-23,CpGisland,TRUE,U13,Hc-P
13540,cg07334368,-0.000011,0.0000029,-3.806261626,0.000170008,loss,ns,-0.00000765,0.00000492,-1.555833545,0.120767967,neg,ns,-0.002919001,0.001441095,-2.025544353,0.04366794,neg,ns,1.359837299,0.000081,0.0000496,1.634906961,0.103083538,pos,ns,0.951299477,Gm10172,Gm10172_Exon,7,71224311,71224360,71224359,71224360,50,+,GTGACTTCCATTTTCTTTGCTTTCTATTGATTTTCACTTAATAACTGGCG,"Exon (6030442E23Rik-201/6030442E23Rik-201, exon 2 of 2)",7,71332363,71332921,559,2,Gm10172-201,108561,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,31,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20482,cg12088599,0.0000491,0.00000818,6.007650781,5.27E-09,gain,yes,-0.0000216,0.0000139,-1.555697657,0.120800292,neg,ns,-0.010155873,0.004071369,-2.49446159,0.013135251,neg,ns,1.881561619,0.00032476,0.000140014,2.31947871,0.021018632,pos,ns,0.274100177,Hoxc4,Hoxc4_Intergenic_downstream,15,103061722,103061771,103061770,103061771,50,-,GAGAGTTCACACGGCTTTCGCTGCTGTTGAAGGTTAAAAGATGGTCTTCG,Distal Intergenic,15,103034395,103036852,2458,1,Hoxc4-201,27376,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,32,91,15423,ENSMUSG00000075394,mapped to different genes,15,103061537,103061809,273,*,273,19,0.586080586,0.8125,0.06959707,7.69E-12,CpGisland,TRUE,U13,Hc-P
25856,cg08275784,0.0000267,0.0000149,1.787256993,0.074872821,gain,ns,-0.0000395,0.0000254,-1.55519776,0.120919266,neg,ns,-0.001213321,0.007439146,-0.16309944,0.870546412,neg,ns,0.06020807,0.000123478,0.000255832,0.482652166,0.629683376,pos,ns,0.21062021,Pax7,Pax7_Intron,4,139791573,139791622,139791621,139791622,50,-,CCTCAAAAATCACCATTAGAGTACGCTCCTTATGGCCATAAAATTTCTCG,"Intron (Pax7-201/Pax7, intron 4 of 8)",4,139737062,139833528,96467,2,Pax7-201,41906,Pax7-201;Pax7-202,Pax7;Pax7,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,27,18509,ENSMUSG00000028736,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24069,cg12763898,0.0000126,0.00000297,4.239253042,0.0000296,gain,ns,-0.00000785,0.00000505,-1.554844038,0.121003507,neg,ns,0.003012105,0.001479759,2.035537444,0.042646979,pos,ns,1.370111726,-0.000065,0.0000509,-1.277463852,0.202394409,neg,ns,0.058502341,Zic5,Zic5_Intron,14,122450761,122450810,122450761,122450762,50,+,CGCTGCTAATTACAAATAAATGATGATGTGCTCACTAAGTAATTGATTTA,"Intron (Gm5089-201/Gm5089-201, intron 1 of 2)",14,122459193,122460021,829,2,Zic5-202,9211,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,26,65100,ENSMUSG00000041703,mapped to different genes,14,122450709,122450762,54,*,54,8,0.796296296,0.935064935,0.148148148,9.03E-08,CpGisland,TRUE,U3,Pr-B
196,cg22368239,-0.0000297,0.00000511,-5.810283869,1.55E-08,loss,yes,-0.0000135,0.00000869,-1.554701004,0.121037584,neg,ns,-0.001038456,0.002545522,-0.407953845,0.68358917,neg,ns,0.165204827,-0.0000532,0.0000875,-0.60818791,0.54350818,neg,ns,0.86098978,Itsn2,Itsn2_threeUTR,12,4676283,4676332,4676331,4676332,50,-,CAGGGCAGGCAGCCCTGATCAAATATCTCCTACACAATTCGTTTACTTCG,3' UTR,12,4593008,4713950,120943,1,Itsn2-201,83275,Itsn2-201;Itsn2-215;Itsn2-211;Itsn2-214;Itsn2-202;Itsn2-210,Itsn2;Itsn2;Itsn2;Itsn2;Itsn2;Itsn2,0;0;0;0;0;11748,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,2,20403,ENSMUSG00000020640,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6281,cg09030000,-0.000043,0.0000272,-1.582736168,0.114501258,loss,ns,0.0000718,0.0000462,1.554662151,0.121046842,pos,ns,0.047512547,0.01352653,3.512545118,0.000509837,pos,ns,3.292568968,-0.00162572,0.000465176,-3.494847074,0.00054348,neg,ns,0.573605055,Gm7252,Gm7252_Intergenic_downstream,12,36721518,36721567,36721518,36721519,50,+,CGGTTGATCACACATGTGCAACAGATGTGTGAGCATGCGTAGCGAAAATA,Distal Intergenic,12,36539357,36539812,456,1,Gm7252-201,182161,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,638858,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
456,cg23507513,-0.000022,0.00000747,-2.937876655,0.003552518,loss,ns,0.0000197,0.0000127,1.554549952,0.12107358,pos,ns,-0.002277232,0.003720221,-0.61212279,0.540905221,neg,ns,0.266878827,0.0000219,0.000127938,0.170823006,0.864474378,pos,ns,0.930493886,Dync1i1,Dync1i1_Intron,6,6012795,6012844,6012795,6012796,50,-,CGCCTATTGTCTGGAGTCTAGACAGGCTATAGAAAAATCTCTGTGACATA,"Intron (Dync1i1-203/Dync1i1, intron 16 of 16)",6,5725639,6028039,302401,1,Dync1i1-203,287156,Dync1i1-203;Dync1i1-202;Dync1i1-204;Dync1i1-201;Dync1i1-206,Dync1i1;Dync1i1;Dync1i1;Dync1i1;Dync1i1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,9,13426,ENSMUSG00000029757,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5025,cg02106733,-0.00000113,0.00000311,-0.362271585,0.717395929,loss,ns,0.0000082,0.00000528,1.554549861,0.121073601,pos,ns,0.00316618,0.001545999,2.047982698,0.041403913,pos,ns,1.382958616,-0.000102281,0.0000532,-1.923768915,0.055299013,neg,ns,0.924566178,Dlg1,Dlg1_threeUTR,16,31847599,31847648,31847647,31847648,50,+,TTTTTATTGCTTGCTCTCTGGGGACTACCCTCTACAGGAGATCCCTGACG,3' UTR,16,31663443,31875129,211687,1,Dlg1-206,184156,Dlg1-206;Dlg1-205;Dlg1-203;Dlg1-209;Dlg1-202;Dlg1-201;Dlg1-204;Dlg1-208;Dlg1-207;Dlg1-213;Dlg1-214,Dlg1;Dlg1;Dlg1;Dlg1;Dlg1;Dlg1;Dlg1;Dlg1;Dlg1;Dlg1;Dlg1,0;0;0;0;0;0;0;55828;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,8,13383,ENSMUSG00000022770,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25168,cg07514567,-0.00000891,0.00000792,-1.124327284,0.261744045,loss,ns,0.0000209,0.0000135,1.554258994,0.121142938,pos,ns,0.008090598,0.003942083,2.052366056,0.040973496,pos,ns,1.387496979,-0.000236933,0.000135568,-1.747704595,0.081505284,neg,ns,0.815064631,Plekha6,Plekha6_Exon,1,133294536,133294585,133294584,133294585,50,-,CATTTCTGTGTGTCTGTGCCTCTTCAGTATGCAGAACGTGGTGCCCATCG,"Exon (Plekha6-204/Plekha6, exon 21 of 23)",1,133181321,133301219,119899,1,Plekha6-204,113215,Plekha6-204;Plekha6-202;Plekha6-201;Plekha6-203;Plekha6-207;Plekha6-210;Plekha6-208,Plekha6;Plekha6;Plekha6;Plekha6;Plekha6;Plekha6;Plekha6,0;0;0;0;0;2786;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,7,240753,ENSMUSG00000041757,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8647,cg02268652,-0.0000341,0.00000806,-4.230093274,0.0000308,loss,ns,-0.0000213,0.0000137,-1.554195872,0.12115799,neg,ns,0.011295569,0.004013719,2.814239857,0.005201862,pos,ns,2.283841183,-0.000346481,0.000138031,-2.510157538,0.012576873,neg,ns,0.923783407,Btrc,Btrc_Intron,19,45476409,45476458,45476457,45476458,50,-,CGGCAAGAGTCCGCATAAATCTGCCCGAATGGTGGGGGCTGGAGCATTCG,"Intron (Btrc-204/Btrc, intron 1 of 2)",19,45363734,45507736,144003,1,Btrc-204,112675,Btrc-204;Btrc-201;Btrc-210;Btrc-202;Btrc-203;Btrc-209,Btrc;Btrc;Btrc;Btrc;Btrc;Btrc,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,63,98,12234,ENSMUSG00000025217,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19253,cg08819006,-0.0000165,0.00000586,-2.812660634,0.005226825,loss,ns,0.0000155,0.00000996,1.554090048,0.121183227,pos,ns,0.001124794,0.002917745,0.385501196,0.700130512,pos,ns,0.154820995,-0.0000759,0.000100341,-0.75664255,0.449838689,neg,ns,0.61014114,Tnpo1,Tnpo1_Exon,13,98850109,98850158,98850157,98850158,50,-,AGGGTCTTATAAACTGCTGTAGCATGGGGGCCACCTCTTGAGGACAAACG,"Exon (Tnpo1-201/Tnpo1, exon 20 of 24)",13,98839019,98891040,52022,2,Tnpo1-201,40882,Tnpo1-201;Tnpo1-202;Tnpo1-206;Tnpo1-204,Tnpo1;Tnpo1;Tnpo1;Tnpo1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,9,238799,ENSMUSG00000009470,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14202,cg15598165,0.00000774,0.00000603,1.284745304,0.199840452,gain,ns,-0.0000159,0.0000102,-1.554057133,0.121191077,neg,ns,-0.004040006,0.003000397,-1.346490744,0.179127961,neg,ns,0.746836617,0.0000244,0.000103183,0.23625932,0.813387476,pos,ns,0.844602294,Mtx2,Mtx2_Intergenic_upstream,2,74802518,74802567,74802518,74802519,50,+,CGTGATTAAAGGTCTTTATCATTTTGTTCTTGAGCTTGTCAGTTCAATCC,Distal Intergenic,2,74825803,74878431,52629,1,Mtx2-201,-23236,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,53375,ENSMUSG00000027099,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7977,cg14012997,0.0000382,0.00000439,8.700918829,1.97E-16,gain,yes,-0.0000116,0.00000745,-1.553889915,0.121230965,neg,ns,0.007621728,0.002182618,3.492011519,0.000549059,pos,ns,3.260380874,-0.000275484,0.0000751,-3.670180429,0.000285287,neg,ns,0.065375038,Pax2,Pax2_Intergenic_upstream,19,44672172,44672221,44672172,44672173,50,-,CGACGCGGGGAAGGAATTGCGCAAAATAAAGAAGCATGTTCCAACAAGTC,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-83873,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,19,44671992,44672192,201,*,201,20,0.666666667,0.897321429,0.099502488,1.62E-15,CpGisland,TRUE,U13,Hc-P
7144,cg14910835,-0.000154078,0.0000247,-6.226140612,1.55E-09,loss,yes,0.0000653,0.000042,1.553731759,0.121268701,pos,ns,0.080346294,0.012316812,6.523303028,2.80E-10,pos,ns,9.553370559,-0.002344819,0.000423574,-5.535793469,6.61E-08,neg,yes,0.572714444,Immp2l,Immp2l_threeUTR,12,41451848,41451897,41451848,41451849,50,+,CGTGGCTAATATGTGTAATACAACACAGGAGGAGGTATTGCTCAGTTCAA,3' UTR,12,41024090,41955588,931499,1,Immp2l-202,427758,Immp2l-202;Immp2l-203;Lrrn3-201,Immp2l;Immp2l;Lrrn3,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,4,93757,ENSMUSG00000056899,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10466,cg19489133,0.0000649,0.0000142,4.553629843,0.00000759,gain,ns,-0.0000376,0.0000242,-1.553604564,0.121299057,neg,ns,0.02043153,0.007089198,2.882064923,0.00422665,pos,ns,2.374003759,-0.000733811,0.000243797,-3.00992663,0.002827693,neg,ns,0.509779922,Cep120,Cep120_Intron,18,53693469,53693518,53693469,53693470,50,+,CGTGGCTATTCACCAGAGGCAATGTAAAATTAACATGGTACTAATCCAAT,"Intron (Gm19466-202/Gm19466-202, intron 2 of 3)",18,53681723,53744547,62825,2,Cep120-201,51029,Cep120-201;Cep120-203,Cep120;Cep120,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,225523,ENSMUSG00000048799,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9973,cg16066002,0.00000518,0.00000695,0.746188408,0.456119084,gain,ns,-0.0000183,0.0000118,-1.553512954,0.121320923,neg,ns,-0.003894979,0.003457744,-1.126450815,0.260845983,neg,ns,0.583615847,-0.0000225,0.000118912,-0.188886433,0.850305426,neg,ns,0.897549733,Hectd1,Hectd1_Exon,12,51768585,51768634,51768585,51768586,50,-,CGGCTTAGATTCATGTTGTTCGTGGCATTAGTCCGTGCTATGTTTGCCAC,"Exon (Hectd1-201/Hectd1, exon 25 of 43)",12,51743722,51829536,85815,2,Hectd1-201,60902,Hectd1-201;Hectd1-202;Hectd1-204,Hectd1;Hectd1;Hectd1,0;0;-3354,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,19,19,207304,ENSMUSG00000035247,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17945,cg15581954,-0.00000327,0.00000185,-1.769581312,0.077779961,loss,ns,0.00000488,0.00000314,1.553192962,0.121397328,pos,ns,-0.000306005,0.000919974,-0.332623245,0.73964351,neg,ns,0.130977549,-0.00000553,0.0000316,-0.174690376,0.861436965,neg,ns,0.058258616,Runx1,Runx1_fiveUTR,16,92697310,92697359,92697310,92697311,50,-,CGCTGGCTCTATGAATGAGAGTGCCTGGAAATGAACGTGCTTTTACTGTA,Promoter (<=1kb),16,92603656,92697328,93673,2,Runx1-202,0,Runx1-201;Runx1-202;Runx1-203;Runx1-205;Runx1-206;Runx1-204,Runx1;Runx1;Runx1;Runx1;Runx1;Runx1,0;0;0;-1815;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,7,10,12394,ENSMUSG00000022952,mapped to different genes,16,92697175,92697868,694,*,694,67,0.687319885,0.817619131,0.096541787,6.68E-50,CpGisland,TRUE,U1,Pr-A
22863,cg16911392,0.00000558,0.00000384,1.453276981,0.147158398,gain,ns,0.0000101,0.00000652,1.553104647,0.121418422,pos,ns,0.005661335,0.001910178,2.963773233,0.003274423,pos,ns,2.484865165,-0.0000707,0.0000657,-1.076834789,0.282391361,neg,ns,0.06697474,Sox6,Sox6_Promoter,7,116038938,116038987,116038986,116038987,50,-,AAACTGTGCATAGTCTCTAAGGCAATAAATCTATTACACTTAAAGAAACG,Promoter (<=1kb),7,115539460,116038796,499337,2,Sox6-214,-191,1110004F10Rik-205;1110004F10Rik-206;Sox6-204;Sox6-214;Sox6-208,1110004F10Rik;1110004F10Rik;Sox6;Sox6;Sox6,-410;-725;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,57,20679,ENSMUSG00000051910,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9484,cg10108444,-0.0000121,0.00000735,-1.649903481,0.099975501,loss,ns,-0.0000194,0.0000125,-1.553090073,0.121421903,neg,ns,-0.002052537,0.003658894,-0.560971992,0.575221876,neg,ns,0.240164606,-0.000083,0.000125829,-0.659951315,0.509775093,neg,ns,0.911765615,Zbtb16,Zbtb16_Intergenic_upstream,9,48866519,48866568,48866519,48866520,50,+,CGAGAGCCATAATATTATTTGTTAACATTTTTATGATGCCAAATGGTCTG,Distal Intergenic,9,48656917,48836222,179306,2,Zbtb16-202,-30297,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,37,235320,ENSMUSG00000066687,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9406,cg18352564,0.0000363,0.00000504,7.193955496,4.76E-12,gain,yes,-0.0000133,0.00000857,-1.553073882,0.12142577,neg,ns,0.00629018,0.002509667,2.506380575,0.012709272,pos,ns,1.89587931,-0.000212688,0.0000863,-2.464310611,0.014269978,neg,ns,0.020777694,Otx2,Otx2_fiveUTR,14,48665283,48665332,48665331,48665332,50,-,ATAATAAATGTTTTCTTGATAAACTAACGAGATAATCCGAGGGGCACACG,5' UTR,14,48657677,48667515,9839,2,Otx2-209,2183,Otx2-209;Otx2-201;Otx2-210;Otx2-204;Otx2-202;Otx2-206;Otx2-208;Otx2-207;Otx2-205;Otx2-203;Otx2-211,Otx2;Otx2;Otx2;Otx2;Otx2;Otx2;Otx2;Otx2;Otx2;Otx2;Otx2,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,15,18424,ENSMUSG00000021848,conserved gene but different region,14,48665248,48665372,125,*,125,9,0.416,1.704545455,0.072,0.00000584,CpGisland,TRUE,U13,Hc-P
24891,cg10450430,0.000031,0.00000976,3.17872643,0.001628593,gain,ns,0.0000258,0.0000166,1.553051957,0.121431007,pos,ns,0.013548463,0.004858626,2.788538107,0.005621903,pos,ns,2.250116663,-0.000268033,0.000167088,-1.604145599,0.109700239,neg,ns,0.173947668,Pitx2,Pitx2_threeUTR,3,129218789,129218838,129218837,129218838,50,+,CAGCCTGAGACTGAAAGCAAAGCAGCACTCCAGCTTCGGCTACGCCAGCG,3' UTR,3,129199878,129219590,19713,1,Pitx2-207,18911,Pitx2-207;Pitx2-201;Pitx2-203;Pitx2-204;Pitx2-208;Pitx2-202;Pitx2-206,Pitx2;Pitx2;Pitx2;Pitx2;Pitx2;Pitx2;Pitx2,0;0;0;0;0;0;4514,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,7,24,18741,ENSMUSG00000028023,mapped to different genes,3,129218825,129218932,108,*,108,13,0.694444444,0.998577525,0.12037037,2.57E-11,CpGisland,TRUE,U13,Hc-P
1202,cg22525805,0.00000876,0.00000457,1.918530573,0.055961989,gain,ns,0.0000121,0.00000776,1.55303772,0.121434409,pos,ns,0.00080509,0.002273404,0.354134213,0.723479055,pos,ns,0.140574037,-0.0000389,0.0000782,-0.497564784,0.619143572,neg,ns,0.845055883,Bcor,Bcor_Exon,X,12058793,12058842,12058793,12058794,50,-,CGCAGATAACTAGCACCATTGATGTTGAGAGGGCTCTGTTTGTCGCTGGC,"Exon (Bcor-202/Bcor, exon 4 of 15)",20,12036740,12080553,43814,2,Bcor-202,21711,Bcor-202;Bcor-203;Bcor-204;Bcor-206;Bcor-201;Bcor-207;Bcor-205,Bcor;Bcor;Bcor;Bcor;Bcor;Bcor;Bcor,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,14,74,71458,ENSMUSG00000040363,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8454,cg09907423,0.0000903,0.0000148,6.086180855,3.41E-09,gain,yes,-0.0000392,0.0000252,-1.552719688,0.121510401,neg,ns,0.001230482,0.00738816,0.166547882,0.867834382,pos,ns,0.061563148,0.000167517,0.000254078,0.659311149,0.510185448,pos,ns,0.657939123,Zeb2,Zeb2_Intron,2,45158447,45158496,45158447,45158448,50,-,CGCTTGGGATTGAAGAGACTGTTGGCTACAATTGACTGTGACAATTAGGA,"Intron (Gm28643-201/Gm28643-201, intron 1 of 1)",2,44983632,45117395,133764,2,Zeb2-212,-41101,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11395,cg21141161,-0.000012,0.00000838,-1.432885918,0.152898115,loss,ns,-0.0000221,0.0000142,-1.552619216,0.121534416,neg,ns,-0.008058007,0.004170961,-1.931930651,0.054279162,neg,ns,1.265366866,0.000130812,0.000143439,0.911967082,0.362494681,pos,ns,0.865324029,Pcdh7,Pcdh7_threeUTR,5,57942218,57942267,57942218,57942219,50,-,CGCATGGAAGAAGAGTGCTGTTAAGGCCTCTCCATTAATCAACAGGTATG,3' UTR,5,57717967,58133230,415264,1,Pcdh7-203,224251,Pcdh7-203;Pcdh7-202;Pcdh7-206;Pcdh7-204,Pcdh7;Pcdh7;Pcdh7;Pcdh7,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,5,13,54216,ENSMUSG00000029108,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3608,cg06709422,0.000108653,0.00000946,11.48532872,1.12E-25,gain,yes,-0.000025,0.0000161,-1.552616666,0.121535025,neg,ns,0.011022957,0.004708408,2.341121996,0.019859286,pos,ns,1.702036376,-0.000150379,0.000161922,-0.928716265,0.353758713,neg,ns,0.309798362,Rps24,Rps24_Intron,14,24763259,24763308,24763259,24763260,50,+,CGCCTTCAGTTCAGATGCTTCAGAGCACTAGCAGGCCATATTTTAATCTC,"Intron (4930428N03Rik-205/4930428N03Rik-205, intron 3 of 5)",14,24491149,24491989,841,1,Rps24-209,272110,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,12,20088,ENSMUSG00000025290,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14070,cg05967003,0.00000504,0.00000265,1.9011244,0.058212903,gain,ns,0.00000699,0.0000045,1.552399776,0.12158688,pos,ns,0.00326456,0.001319459,2.474166542,0.01388984,pos,ns,1.857302762,-0.0000915,0.0000454,-2.01674752,0.044583777,neg,ns,0.05607812,Evx2,Evx2_Intergenic_downstream,2,74649094,74649143,74649142,74649143,50,+,TCAGAACCCGCGTCCAAGGCTGCTGCTTAATCCAATGAAGGCAATTTCCG,Distal Intergenic,2,74655616,74659419,3804,2,Evx2-202,10276,Evx2-201,Evx2,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,35,14029,ENSMUSG00000001815,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
17880,cg12372060,-0.00000605,0.00000315,-1.917324458,0.056115576,loss,ns,-0.00000832,0.00000536,-1.552341149,0.121600899,neg,ns,-0.003053502,0.001570162,-1.944704592,0.052714673,neg,ns,1.278068486,0.000066,0.000054,1.222566223,0.222422252,pos,ns,0.913311937,Phf21a,Phf21a_Exon,2,92326932,92326981,92326980,92326981,50,+,CTATGATTACCACAAAGACACTACCTCTCGTCTTGAAAGCAGCAACTGCG,"Exon (Phf21a-204/Phf21a, exon 6 of 17)",2,92093117,92364666,271550,1,Phf21a-201,233815,Phf21a-201;Phf21a-202;Phf21a-204;Phf21a-209;Phf21a-208;Phf21a-207;Phf21a-206;Phf21a-205;Phf21a-203;Phf21a-213;Phf21a-215;Phf21a-214;Phf21a-218,Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,21,192285,ENSMUSG00000058318,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18196,cg16483121,0.00000934,0.00000594,1.571834589,0.11700897,gain,ns,-0.0000157,0.0000101,-1.552059205,0.121668339,neg,ns,-0.002044646,0.002957376,-0.691371529,0.489849512,neg,ns,0.30993732,-0.0000298,0.000101704,-0.293218815,0.769551092,neg,ns,0.759145961,Cacna1g,Cacna1g_Exon,11,94439716,94439765,94439764,94439765,50,+,GAGTCGACAGGCAGCTGAATACAGCTTAACTGTCCACTCGCATCTTCCCG,"Exon (Cacna1g-202/Cacna1g, exon 14 of 36)",11,94408391,94474100,65710,2,Cacna1g-202,34335,Cacna1g-202;Cacna1g-203;Cacna1g-205;Cacna1g-206;Cacna1g-207;Cacna1g-208;Cacna1g-209;Cacna1g-210;Cacna1g-211;Cacna1g-201;Cacna1g-204;Cacna1g-216,Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,18,12291,ENSMUSG00000020866,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5501,cg07584102,-0.0000323,0.00000687,-4.705187544,0.00000383,loss,ns,-0.0000181,0.0000117,-1.551988077,0.121685357,neg,ns,-0.00836795,0.003417441,-2.448601055,0.01489497,neg,ns,1.826960364,0.000101121,0.000117526,0.860419543,0.390222763,pos,ns,0.769833339,Mtdh,Mtdh_Exon,15,34114878,34114927,34114926,34114927,50,+,ATTGGATTCAACTATCCCTGGGATAGAAAATACCATCACAGTTACCACCG,"Exon (Mtdh-201/Mtdh, exon 4 of 12)",15,34082719,34145624,62906,1,Mtdh-201,32159,Mtdh-201;Mtdh-203;Mtdh-204;Mtdh-202;Mtdh-206;Mtdh-207;Mtdh-210;Mtdh-211;Mtdh-205,Mtdh;Mtdh;Mtdh;Mtdh;Mtdh;Mtdh;Mtdh;Mtdh;Mtdh,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,3,67154,ENSMUSG00000022255,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18480,cg06260841,0.00000166,0.000000963,1.719341464,0.086550399,gain,ns,0.00000254,0.00000164,1.551982448,0.121686704,pos,ns,0.001163377,0.000479282,2.427335247,0.015779573,pos,ns,1.801904742,-0.0000464,0.0000165,-2.814108035,0.005203941,neg,ns,0.96813442,Xrn1,Xrn1_Exon,9,95974768,95974817,95974768,95974769,50,-,CGGGAGCACTTCAGTGAAGTTTTTGTGGACCTAAAATGGTTTGAAAGCAA,"Exon (Xrn1-201/Xrn1, exon 10 of 42)",9,95954760,96053027,98268,1,Xrn1-201,20008,Xrn1-201;Xrn1-202;Xrn1-207;Xrn1-204;Xrn1-209;Xrn1-203;Xrn1-208,Xrn1;Xrn1;Xrn1;Xrn1;Xrn1;Xrn1;Xrn1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,24127,ENSMUSG00000032410,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26777,cg20202533,0.000000831,0.00000489,0.169912463,0.865189809,gain,ns,0.0000129,0.00000831,1.551654976,0.12176508,pos,ns,0.002067872,0.002433956,0.849592697,0.396207214,pos,ns,0.402077622,-0.000059,0.0000837,-0.705357071,0.481117713,neg,ns,0.799626469,Iqsec2,Iqsec2_threeUTR,X,152223196,152223245,152223244,152223245,50,+,ATGGGCAGTCCAAGCTCCAGGCCCTGCATGCCCAGTATTGCCAAGGACCG,3' UTR,20,152144268,152225235,80968,1,Iqsec2-207,78928,Iqsec2-207;Iqsec2-202;Iqsec2-203;Iqsec2-201,Iqsec2;Iqsec2;Iqsec2;Iqsec2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,16,245666,ENSMUSG00000041115,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19317,cg08375909,-0.00000282,0.00000278,-1.01278916,0.311950705,loss,ns,-0.00000734,0.00000473,-1.551591415,0.121780297,neg,ns,-0.000758216,0.001385715,-0.547165872,0.584658456,neg,ns,0.233097765,0.0000293,0.0000477,0.613902246,0.539730153,pos,ns,0.927468512,Foxp1,Foxp1_Intron,6,98969775,98969824,98969775,98969776,50,+,CGGTCATACGTGACAAGCTTTGGAATATTTTCTTTTGGTCACACTGCTTG,"Intron (Foxp1-206/Foxp1, intron 9 of 17)",6,98925338,99266515,341178,2,Foxp1-206,296691,Foxp1-206;Foxp1-204;Foxp1-220;Foxp1-230;Foxp1-225;Foxp1-201;Foxp1-205;Foxp1-207;Foxp1-208;Foxp1-226;Foxp1-228;Foxp1-221;Foxp1-222;Foxp1-210;Foxp1-213,Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,87,108655,ENSMUSG00000030067,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25060,cg13665420,-0.00000405,0.00000136,-2.969089079,0.003219864,loss,ns,0.0000036,0.00000232,1.55158061,0.121782884,pos,ns,0.000346453,0.000679071,0.510186863,0.610283614,pos,ns,0.21446829,-0.0000257,0.0000234,-1.099597292,0.27236081,neg,ns,0.954187547,Slc23a2,Slc23a2_Intron,2,132078532,132078581,132078532,132078533,50,-,CGGCATCGGGAACTACCGAGGTAGTTCACTATTTGACAGCTTAACAGTCT,"Intron (Slc23a2-201/Slc23a2, intron 5 of 15)",2,132052496,132145108,92613,2,Slc23a2-201,66527,Slc23a2-201;Slc23a2-202;Slc23a2-207,Slc23a2;Slc23a2;Slc23a2,0;0;-524,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,4,54338,ENSMUSG00000027340,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15763,cg18060631,-0.0000144,0.0000257,-0.559544325,0.576194336,loss,ns,-0.0000677,0.0000436,-1.55155907,0.121788041,neg,ns,0.021151102,0.012783703,1.654536342,0.099030667,pos,ns,1.004230294,0.000482973,0.000439631,1.098588041,0.272800291,pos,ns,0.556371526,Pkdcc,Pkdcc_Intron,17,83218655,83218704,83218655,83218656,50,+,CGTTAACAGCGCATTTAACGACCTCCGGGTGTTTAATAACCTTCAGAAGT,"Intron (Pkdcc-204/Pkdcc, intron 1 of 6)",17,83215292,83225070,9779,1,Pkdcc-204,3363,Pkdcc-204;Pkdcc-201;Pkdcc-203;Pkdcc-202,Pkdcc;Pkdcc;Pkdcc;Pkdcc,0;-1398;-1398;-2331,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,10,106522,ENSMUSG00000024247,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17279,cg00694357,-0.00000173,0.00000182,-0.952312463,0.341680458,loss,ns,0.0000048,0.00000309,1.551541831,0.121792169,pos,ns,0.002266784,0.000906719,2.499985658,0.012936271,pos,ns,1.888190895,-0.0000106,0.0000312,-0.339384512,0.734549886,neg,ns,0.048481039,Zbtb7b,Zbtb7b_Exon,3,89391821,89391870,89391821,89391822,50,+,CGGTGTCCCAAACTAGGTCAGCAGCGCTCGTTTCCTGTGGGTCAGCTAGC,Promoter (<=1kb),3,89377644,89392069,14426,2,Zbtb7b-202,199,Zbtb7b-203;Zbtb7b-204;Zbtb7b-202;Zbtb7b-201;Zbtb7b-206;Zbtb7b-208;Zbtb7b-209;Zbtb7b-205;Zbtb7b-207,Zbtb7b;Zbtb7b;Zbtb7b;Zbtb7b;Zbtb7b;Zbtb7b;Zbtb7b;Zbtb7b;Zbtb7b,0;0;0;0;0;0;0;0;2906,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,12,22724,ENSMUSG00000028042,conserved gene but different region,3,89391684,89392129,446,*,446,30,0.695067265,0.58012487,0.067264574,6.18E-18,CpGisland,TRUE,NA,NRS
3007,cg19381434,-0.00000284,0.00000518,-0.549076742,0.583348058,loss,ns,0.0000136,0.00000879,1.551514497,0.121798714,pos,ns,0.008385519,0.002576139,3.255072412,0.001258991,pos,ns,2.899977488,-0.000269538,0.0000886,-3.042427048,0.002547451,neg,ns,0.869890896,Lrmda,Lrmda_Intron,14,22363160,22363209,22363208,22363209,50,+,TAATATTCTCTTTAAATAAGATCAACACTGCTGCAGTTATAAACTCTTCG,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,343448,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206;Lrmda-202,Lrmda;Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20586,cg11184538,-0.00000259,0.00000454,-0.570885648,0.568490759,loss,ns,0.000012,0.00000771,1.55144735,0.121814793,pos,ns,0.007130255,0.002258382,3.157240242,0.001749408,pos,ns,2.757108875,-0.000246278,0.0000777,-3.171003988,0.001671098,neg,ns,0.915964087,Srek1,Srek1_fiveUTR,13,103769403,103769452,103769403,103769404,50,+,CGAAACTTAACATAACATACTTTGGAGGAAAAAGCAAGAGGTGCGTTGCT,5' UTR,13,103741612,103774608,32997,2,Srek1-201,5156,Srek1-204;Srek1-201;Srek1-210;Srek1-205;Srek1-209;Srek1-206;Srek1-202;Srek1-208,Srek1;Srek1;Srek1;Srek1;Srek1;Srek1;Srek1;Srek1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,7,10,218543,ENSMUSG00000032621,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9081,cg17201390,0.00000875,0.00000954,0.916853895,0.35993192,gain,ns,0.0000252,0.0000162,1.551430683,0.121818784,pos,ns,-0.001341585,0.004750358,-0.282417699,0.777811711,neg,ns,0.109125522,-0.000140369,0.000163364,-0.859238283,0.390872999,neg,ns,0.670612816,Gm13469,Gm13469_Intergenic_upstream,2,46802990,46803039,46803038,46803039,50,-,GAATAGAAAACGTTCTACTAATCATCTACCCCATGAAAATGCCAGCTGCG,Distal Intergenic,2,46406220,46406569,350,2,Gm13469-201,-396470,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,20,27,383690,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10815,cg26174523,-0.0000052,0.00000725,-0.717029395,0.47389585,loss,ns,0.0000191,0.0000123,1.551362922,0.121835013,pos,ns,0.006120247,0.003608596,1.696019072,0.090886204,pos,ns,1.041502036,-0.000269185,0.000124099,-2.169108343,0.030834259,neg,ns,0.580556754,Dclk1,Dclk1_Exon,3,55521858,55521907,55521858,55521859,50,-,CGGGTTTACCATCAAGAGATCAGGGTCTTTGGACTACTACCAGCAACCAG,"Exon (Dclk1-202/Dclk1, exon 13 of 14)",3,55242364,55539068,296705,1,Dclk1-204,279494,Dclk1-204;Dclk1-201;Dclk1-202;Dclk1-207;Dclk1-211;Dclk1-213;Dclk1-208;Dclk1-215,Dclk1;Dclk1;Dclk1;Dclk1;Dclk1;Dclk1;Dclk1;Dclk1,0;0;0;0;59942;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,13175,ENSMUSG00000027797,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13057,cg19351577,0.0000392,0.00000447,8.779117905,1.13E-16,gain,yes,-0.0000118,0.00000759,-1.551349324,0.121838269,neg,ns,-0.000226979,0.002224479,-0.102036744,0.918793478,neg,ns,0.036782096,-0.000155041,0.0000765,-2.026688215,0.043550033,neg,ns,0.072043966,Tcf4,Tcf4_Intron,18,69346892,69346941,69346940,69346941,50,+,CTGTGATCCATTCATTTCTCGCTCTACCTCCTGTTGCATAAAATGATGCG,"Intron (Tcf4-259/Tcf4, intron 1 of 6)",18,69343356,69564082,220727,1,Tcf4-259,3536,Tcf4-259;Tcf4-201;Tcf4-207;Tcf4-210;Tcf4-240;Tcf4-254;Tcf4-246;Tcf4-206;Tcf4-202;Tcf4-257;Tcf4-232;Tcf4-215;Tcf4-248;Tcf4-231;Tcf4-205;Tcf4-253;Tcf4-244;Tcf4-233;Tcf4-238;Tcf4-245;Tcf4-249;Tcf4-219;Tcf4-235;Tcf4-227,Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,42,66,21413,ENSMUSG00000053477,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
16889,cg09518595,-0.00000205,0.00000189,-1.085172749,0.278688322,loss,ns,0.00000498,0.00000321,1.551341683,0.1218401,pos,ns,0.000638747,0.000940392,0.679234413,0.497496164,pos,ns,0.303210264,0.0000333,0.0000323,1.030011592,0.303807514,pos,ns,0.955005904,Diaph3,Diaph3_Exon,14,87073298,87073347,87073346,87073347,50,+,TTAATGTACTGCATCACCATTTCTTTTTTGATACTGAAGTCCTTTTCCCG,"Exon (Diaph3-201/Diaph3, exon 4 of 28)",14,86655367,87141224,485858,2,Diaph3-201,67877,Diaph3-201;Diaph3-202;Diaph3-208;Diaph3-205;Diaph3-209;Diaph3-203,Diaph3;Diaph3;Diaph3;Diaph3;Diaph3;Diaph3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,11,56419,ENSMUSG00000022021,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11176,cg25425221,0.0000158,0.00000592,2.66437338,0.008116739,gain,ns,-0.0000156,0.0000101,-1.551320376,0.121845203,neg,ns,-0.004752476,0.002948206,-1.611988983,0.107981921,neg,ns,0.966648951,0.000320973,0.000101389,3.165773374,0.001700469,pos,ns,0.856310698,Satb2,Satb2_Intron,1,56833569,56833618,56833617,56833618,50,-,TCTGTAACACAACACTGCCTTGTTTTTACAAGTGAGAGGCCACATTTGCG,"Intron (Satb2-201/Satb2, intron 8 of 9)",1,56793981,56972502,178522,2,Satb2-201,138884,Satb2-201;Satb2-202;Satb2-205,Satb2;Satb2;Satb2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,33,212712,ENSMUSG00000038331,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17768,cg18160481,0.000148807,0.0000203,7.317709927,2.18E-12,gain,yes,-0.0000536,0.0000345,-1.551161454,0.121883273,neg,ns,0.068611577,0.010121046,6.779099477,6.11E-11,pos,yes,10.21389953,-0.001074946,0.000348062,-3.08837662,0.00219464,neg,ns,0.472638347,Son,Son_Intron,16,91662385,91662434,91662385,91662386,50,+,CGAAATACAGATGTGGCAGCGGCAGAAGCTCTGTTTAGCAGGCCATTATC,"Intron (Son-203/Son, intron 4 of 11)",16,91647506,91679207,31702,1,Son-203,14879,Son-203;Son-204;Son-202;Son-208;Son-201;Son-205;Son-212;Son-207,Son;Son;Son;Son;Son;Son;Son;Son,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,31,20658,ENSMUSG00000022961,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9382,cg03461661,-0.00000969,0.00000878,-1.104809773,0.270098778,loss,ns,0.0000231,0.0000149,1.551133109,0.121890064,pos,ns,0.008236128,0.004367424,1.885808915,0.060255498,pos,ns,1.22000332,-0.000215293,0.000150195,-1.43341876,0.152745983,neg,ns,0.37919182,Kcnip4,Kcnip4_Exon,5,48509678,48509727,48509678,48509679,50,+,CGTTTTGGCAGCTGAGCAGGGCAAGAGCTTCATGAGCCGCTCTTTAATGC,"Exon (Kcnip4-201/Kcnip4, exon 2 of 9)",5,48389502,48599682,210181,2,Kcnip4-204,89955,Kcnip4-204;Kcnip4-205;Kcnip4-208;Kcnip4-201;Kcnip4-207;Kcnip4-206;Kcnip4-202,Kcnip4;Kcnip4;Kcnip4;Kcnip4;Kcnip4;Kcnip4;Kcnip4,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,6,80334,ENSMUSG00000029088,conserved gene and region,5,48509447,48509778,332,*,332,17,0.475903615,0.922222222,0.051204819,1.34E-08,CpGisland,TRUE,U15,NS
2206,cg11076618,-0.0000104,0.00000325,-3.185817763,0.001590444,loss,ns,-0.00000858,0.00000553,-1.551091329,0.121900074,neg,ns,-0.003188627,0.001619844,-1.968477981,0.049903798,neg,ns,1.301866403,0.0000608,0.0000557,1.091484402,0.275907373,pos,ns,0.914451445,Ube2e2,Ube2e2_threeUTR,14,18574307,18574356,18574307,18574308,50,+,CGCTTGGTCCACTGTCTGGCCATCCGGTCATGCTCTGCTCTGTTGGTCAT,3' UTR,14,18573575,18888449,314875,2,Ube2e2-209,314093,Ube2e2-209;Ube2e2-205;Ube2e2-207;Ube2e2-201;Ube2e2-210;Ube2e2-211,Ube2e2;Ube2e2;Ube2e2;Ube2e2;Ube2e2;Ube2e2,0;0;0;0;22885;314037,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,218793,ENSMUSG00000058317,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23048,cg11890422,0.0000957,0.0000185,5.177413395,0.000000405,gain,yes,-0.0000487,0.0000314,-1.551061968,0.121907109,neg,ns,0.028957349,0.009201232,3.147116556,0.001809156,pos,ns,2.742523894,-0.000584457,0.00031643,-1.847037285,0.065694544,neg,ns,0.409203011,Cxcl12,Cxcl12_Exon,6,117173496,117173545,117173496,117173497,50,-,CGGCTGAAGAACAACAACAGACAAGTGTGCATTGACCCGAAGCTAAAGTG,"Exon (Cxcl12-202/Cxcl12, exon 3 of 3)",6,117168535,117175069,6535,1,Cxcl12-202,4961,Cxcl12-202;Cxcl12-203;Cxcl12-204;Cxcl12-201,Cxcl12;Cxcl12;Cxcl12;Cxcl12,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,20315,ENSMUSG00000061353,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1891,cg14005972,0.00000336,0.00000262,1.279923265,0.201529115,gain,ns,0.00000691,0.00000445,1.550958111,0.121931997,pos,ns,0.002441265,0.001304685,1.871152254,0.062265793,pos,ns,1.205750475,-0.0000348,0.0000449,-0.776531466,0.438027333,neg,ns,0.934011899,Fat3,Fat3_Intron,9,16029329,16029378,16029377,16029378,50,+,AATATAGAACATCTCTCGAGCATGCTTGCCACCTTGAAGCAGGGCAGTCG,"Intron (Fat3-205/Fat3, intron 6 of 25)",9,15910189,16501285,591097,2,Fat3-205,471907,Fat3-205;Fat3-201,Fat3;Fat3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,4,270120,ENSMUSG00000074505,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27209,cg00518708,0.0000261,0.00000837,3.111337085,0.002035744,gain,ns,-0.0000221,0.0000142,-1.550817427,0.121965716,neg,ns,-0.004548858,0.004167541,-1.091496966,0.275901856,neg,ns,0.559245379,-0.0000189,0.000143321,-0.131592263,0.895392168,neg,ns,0.89846702,Rabgap1l,Rabgap1l_Exon,1,160710131,160710180,160710179,160710180,50,-,TTAAGATTATCATTACCATATCCAGTAAATGCATGTCACTGTTCTTCACG,"Exon (Rabgap1l-201/Rabgap1l, exon 8 of 21)",1,160257205,160792946,535742,2,Rabgap1l-201,82766,Rabgap1l-201;Rabgap1l-216,Rabgap1l;Rabgap1l,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,5,29809,ENSMUSG00000026721,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19028,cg06592042,-0.00000607,0.0000063,-0.963694058,0.335950466,loss,ns,0.0000166,0.0000107,1.55079144,0.121971946,pos,ns,-0.002450232,0.003137066,-0.781058313,0.435364246,neg,ns,0.36114724,-0.0000232,0.000107883,-0.214925382,0.829966816,neg,ns,0.889485709,Gm765,Gm765_Intron,6,98218420,98218469,98218420,98218421,50,-,CGTTATAGTTAGCAAGATGAACCAGTTGGCCGTTACACATGCTGGCAGGG,"Intron (Gm32592-201/Gm32592-201, intron 2 of 4)",6,98341463,98342659,1197,2,Gm765-202,124239,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,10,330390,ENSMUSG00000090667,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23509,cg24602589,-0.0000416,0.00000824,-5.044961029,0.000000774,loss,yes,-0.0000217,0.000014,-1.550775469,0.121975774,neg,ns,0.015906973,0.004099785,3.879953272,0.000127639,pos,ns,3.894017641,-0.001133832,0.000140991,-8.041857896,1.89E-14,neg,yes,0.877449279,Med13l,Med13l_Exon,5,118730916,118730965,118730964,118730965,50,-,AGGATGGATTTGGTACCAAGGATGTCACTACACCAGGTCATTCCACGCCG,"Exon (Med13l-201/Med13l, exon 12 of 31)",5,118560719,118765438,204720,1,Med13l-201,170197,Med13l-201;Med13l-202,Med13l;Med13l,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,16,76199,ENSMUSG00000018076,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14797,cg05655186,-0.00000779,0.00000694,-1.121942448,0.262755172,loss,ns,0.0000183,0.0000118,1.550755251,0.121980621,pos,ns,0.014193264,0.003456386,4.106389011,0.0000515,pos,ns,4.288507095,-0.000424875,0.000118865,-3.574437799,0.000406904,neg,ns,0.869040758,Nufip2,Nufip2_threeUTR,11,77712043,77712092,77712091,77712092,50,+,GGTTTTAAAGTTCTGCTGTGTGTTCAATTGCCTTGTGTAACCACTTGTCG,3' UTR,11,77686155,77712741,26587,1,Nufip2-201,25888,Nufip2-201;Nufip2-204,Nufip2;Nufip2,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,10,68564,ENSMUSG00000037857,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18209,cg20778642,0.0000899,0.0000107,8.378359151,1.89E-15,gain,yes,0.0000283,0.0000182,1.550704226,0.121992854,pos,ns,0.011949586,0.005341559,2.237097084,0.025990575,pos,ns,1.585184113,-0.0000036,0.000183696,-0.019613002,0.984364709,neg,ns,0.613503584,Celf3,Celf3_Intron,3,94484273,94484322,94484273,94484274,50,-,CGGTTGCCATGGTGCGCATTCTCCCGTTGCCACGGAGACTGGGCATCTGC,"Intron (Celf3-214/Celf3, intron 3 of 4)",3,94478295,94485318,7024,1,Celf3-214,5978,Celf3-214;Celf3-208;Celf3-204;Celf3-215;Celf3-201;Celf3-213;Celf3-212;Celf3-207;Celf3-206;Celf3-211;Celf3-205;Celf3-209;Celf3-210;Celf3-202;Celf3-203;Riiad1-202,Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Riiad1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,12,78784,ENSMUSG00000028137,conserved gene and region,3,94484222,94484339,118,*,118,11,0.652542373,0.879403794,0.093220339,2.29E-08,CpGisland,TRUE,U11,Tr-P
15947,cg22090756,-0.0000178,0.00000408,-4.357119223,0.0000179,loss,ns,0.0000107,0.00000693,1.550150118,0.122125757,pos,ns,-0.001105958,0.002030792,-0.544594088,0.58642425,neg,ns,0.231788079,0.000163162,0.0000698,2.336261792,0.020114627,pos,ns,0.901926504,Adgrl1,Adgrl1_threeUTR,8,83941793,83941842,83941841,83941842,50,+,GGTCTCCTTTTCGATATGCCAAACCAATTTTGGGTCGAGTGCATTTAACG,3' UTR,8,83900105,83941954,41850,1,Adgrl1-207,41688,Adgrl1-207;Adgrl1-202;Adgrl1-201;Adgrl1-205;Adgrl1-210;Adgrl1-204;Adgrl1-209;Adgrl1-208;Adgrl1-203,Adgrl1;Adgrl1;Adgrl1;Adgrl1;Adgrl1;Adgrl1;Adgrl1;Adgrl1;Adgrl1,0;0;0;0;0;0;7216;5638;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,4,330814,ENSMUSG00000013033,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17595,cg20786720,-0.000106881,0.0000148,-7.232138272,3.74E-12,loss,yes,0.0000389,0.0000251,1.549866088,0.122193926,pos,ns,0.007531313,0.007355476,1.023905679,0.306678153,pos,ns,0.513317161,-0.000753421,0.000252954,-2.978486164,0.003125448,neg,ns,0.644436064,Aktip,Aktip_Intron,8,91170836,91170885,91170836,91170837,50,-,CGTTTTAAATGGCAGTTAAAAATTGTATGTGGCAGTTCACAATGAAATTT,"Intron (Gm45666-201/Gm45666-201, intron 1 of 1)",8,91125916,91199976,74061,2,Aktip-209,29091,Aktip-209;Aktip-207,Aktip;Aktip,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,6,14339,ENSMUSG00000031667,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3908,cg18937940,-0.00000182,0.00000425,-0.428950611,0.6682571,loss,ns,0.0000112,0.00000722,1.549865392,0.122194093,pos,ns,0.001073438,0.002115034,0.507527469,0.612145648,pos,ns,0.213145234,0.0000673,0.0000727,0.925897972,0.355219236,pos,ns,0.519928032,Celf4,Celf4_Intron,18,25744538,25744587,25744586,25744587,50,+,AATTAGGTGTGACTGCATCATTAAATTAGAATAATGAACAAACAGCCACG,"Intron (Celf4-202/Celf4, intron 1 of 12)",18,25477632,25753983,276352,2,Celf4-202,9396,Celf4-202;Celf4-201;Celf4-203;Celf4-207;Celf4-206;Celf4-209;Celf4-205,Celf4;Celf4;Celf4;Celf4;Celf4;Celf4;Celf4,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,59,108013,ENSMUSG00000024268,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5753,cg10548614,-0.00000783,0.0000135,-0.580661348,0.561890585,loss,ns,0.0000355,0.0000229,1.549841746,0.12219977,pos,ns,0.007153237,0.00671325,1.065540114,0.287460774,pos,ns,0.54142141,-0.00011611,0.000230868,-0.502929348,0.615371065,neg,ns,0.161343955,Kctd15,Kctd15_Intron,7,34653048,34653097,34653096,34653097,50,+,CGCTTCTTTGCTAAGCTGTTATTTTAACCATAAAAGGTAAACAGAAGGCG,"Intron (Kctd15-202/Kctd15, intron 1 of 6)",7,34639014,34654398,15385,2,Kctd15-202,1301,Kctd15-202;Kctd15-203;Kctd15-201;Kctd15-206;Kctd15-208;Kctd15-204;Kctd15-205;Kctd15-207,Kctd15;Kctd15;Kctd15;Kctd15;Kctd15;Kctd15;Kctd15;Kctd15,0;0;0;-4304;0;0;0;3635,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,25,233107,ENSMUSG00000030499,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
24166,cg02117619,-0.00000317,0.00000257,-1.233358105,0.218376551,loss,ns,-0.00000678,0.00000437,-1.549737449,0.12222481,neg,ns,-0.002892823,0.001281005,-2.25824467,0.024625419,neg,ns,1.60861638,0.0000428,0.0000441,0.972560623,0.33152997,pos,ns,0.047568185,Tnrc6a,Tnrc6a_Intron,7,123125071,123125120,123125119,123125120,50,-,TGATTGAGGCGGCCCTTATGGCGGGCTGTCAAACTGTTTTGGCTTCCCCG,"Intron (Gm45846-201/Gm45846-201, intron 2 of 2)",7,123123885,123162663,38779,1,Tnrc6a-209,1186,Tnrc6a-209;Tnrc6a-203;Tnrc6a-201;Tnrc6a-210,Tnrc6a;Tnrc6a;Tnrc6a;Tnrc6a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,24,233833,ENSMUSG00000052707,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13875,cg08826760,0.00000033,0.00000555,0.059509895,0.952584328,gain,ns,0.0000146,0.00000943,1.549722543,0.122228389,pos,ns,0.007488204,0.002763071,2.71010183,0.00710069,pos,ns,2.148699421,-0.000278119,0.000095,-2.926897883,0.003676803,neg,ns,0.88492092,Ola1,Ola1_Intron,2,73180075,73180124,73180075,73180076,50,+,CGTTAACTACCACAGGAGTGCTGATTACACAGGCACCAGCAATTTCCTAA,"Intron (Ola1-201/Ola1, intron 4 of 10)",2,73092801,73214447,121647,2,Ola1-201,34323,Gm13664-201;Ola1-201;Ola1-206;Ola1-203;Ola1-202,Gm13664;Ola1;Ola1;Ola1;Ola1,3464;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,19,67059,ENSMUSG00000027108,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2446,cg05207218,0.0000171,0.0000102,1.673758821,0.095186651,gain,ns,0.0000269,0.0000174,1.549714475,0.122230327,pos,ns,0.010783863,0.005084822,2.120794706,0.034732747,pos,ns,1.459260871,-0.000411824,0.000174867,-2.355073638,0.019142037,neg,ns,0.365263787,Ptf1a,Ptf1a_Intergenic_downstream,2,19458949,19458998,19458997,19458998,50,-,AGACCTTTCACAGACCCTAAGGCAGTGGGAGGGAGCTCTTTACTAAACCG,Distal Intergenic,2,19445663,19447501,1839,1,Ptf1a-201,13335,4921504E06Rik-201,4921504E06Rik,94916,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,14,21,19213,ENSMUSG00000026735,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26667,cg13718272,0.0000133,0.00000253,5.267236781,0.00000026,gain,yes,-0.00000666,0.0000043,-1.54962195,0.122252545,neg,ns,0.002949339,0.001259768,2.341176189,0.019856455,pos,ns,1.702098291,-0.00012789,0.0000433,-2.951987868,0.003398414,neg,ns,0.041250955,Rere,Rere_Intron,4,150371618,150371667,150371666,150371667,50,-,CGCTGCCTCTTTAATATCTTGCTTGCAGATGCATTTTCTAGCTGACCACG,"Intron (Rere-202/Rere, intron 1 of 22)",4,150281646,150621966,340321,1,Rere-202,89972,Rere-202,Rere,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,7,68703,ENSMUSG00000039852,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10657,cg04858895,-0.0000144,0.0000101,-1.426739242,0.154661442,loss,ns,-0.0000266,0.0000171,-1.549586908,0.12226096,neg,ns,-0.011558768,0.005020559,-2.302286849,0.021981343,neg,ns,1.657945777,0.000101664,0.000172657,0.588824664,0.556407699,pos,ns,0.863383941,Bcl2l2,Bcl2l2_threeUTR,14,54885384,54885433,54885432,54885433,50,-,GCGGAGTTCACAGCTCTATACGGGGACGGGGCCCTGGAGGAGGCGCGGCG,3' UTR,14,54883377,54888234,4858,1,Bcl2l2-201,2007,Bcl2l2-201;Bcl2l2-202;Bcl2l2-204;Bcl2l2-203;Bcl2l2-205;Gm20521-201,Bcl2l2;Bcl2l2;Bcl2l2;Bcl2l2;Bcl2l2;Gm20521,0;2003;0;0;1877;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,4,12050,ENSMUSG00000022194,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15347,cg15338129,-0.00000435,0.00000164,-2.662147989,0.008169368,loss,ns,0.00000431,0.00000278,1.549377413,0.122311281,pos,ns,0.002636538,0.000814129,3.238475694,0.001332002,pos,ns,2.875495226,-0.0000755,0.000028,-2.697456759,0.007369508,neg,ns,0.060936763,Dcaf5,Dcaf5_Exon,12,80436283,80436332,80436283,80436284,50,-,CGCAGGCGTCTCCTCTGAAAGTCCTGAGTGAGCAGGGGGTCCCCATGCAA,Promoter (<=1kb),12,80335848,80436601,100754,2,Dcaf5-201,269,Dcaf5-201;Dcaf5-202,Dcaf5;Dcaf5,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,6,320808,ENSMUSG00000049106,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
18642,cg07962086,0.0000152,0.00000465,3.261746235,0.001230692,gain,ns,0.0000122,0.0000079,1.549102385,0.122377368,pos,ns,0.003916129,0.00231482,1.69176405,0.091695865,pos,ns,1.037650246,0.00000374,0.0000796,0.046975097,0.962563323,pos,ns,0.79315452,Skap1,Skap1_Intergenic_upstream,11,96448100,96448149,96448100,96448101,50,-,CGCAAGGTTCAAGGCTGCAATTCATCCCGCCGTGCCTCTGAAAAATGGGA,Distal Intergenic,11,96464593,96759130,294538,1,Skap1-203,-16493,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,46,78473,ENSMUSG00000057058,conserved gene and region,11,96447944,96448131,188,*,188,16,0.54787234,1.147215866,0.085106383,2.15E-11,CpGisland,TRUE,U11,Tr-P
19709,cg05446174,-0.0000048,0.00000366,-1.311285176,0.190731845,loss,ns,-0.00000964,0.00000622,-1.549055205,0.122388708,neg,ns,-0.001418355,0.001822714,-0.778155258,0.437070996,neg,ns,0.359448013,-0.00000293,0.0000627,-0.04679109,0.962709859,neg,ns,0.914290624,Fam168a,Fam168a_Exon,7,100786842,100786891,100786842,100786843,50,-,CGTGCAGCCTGGGGCTCCTTATGGCAACCCTAAGAACATGGCCTACACGG,"Exon (Fam168a-202/Fam168a, exon 2 of 9)",7,100706635,100841381,134747,1,Fam168a-202,80207,Fam168a-202;Fam168a-208;Fam168a-204;Fam168a-201;Fam168a-203;Fam168a-205;Fam168a-206;Fam168a-209;Fam168a-210,Fam168a;Fam168a;Fam168a;Fam168a;Fam168a;Fam168a;Fam168a;Fam168a;Fam168a,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,5,319604,ENSMUSG00000029461,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3889,cg25239681,-0.000000353,0.00000172,-0.205225502,0.837530637,loss,ns,0.00000452,0.00000292,1.548951564,0.122413621,pos,ns,0.001985897,0.000855807,2.320495116,0.020962889,pos,ns,1.678548869,-0.0000801,0.0000294,-2.720939761,0.006877366,neg,ns,0.963151819,5730522E02Rik,5730522E02Rik_Intron,11,25693367,25693416,25693367,25693368,50,+,CGAATCTGTTCAATATATTAAAGTTGATTCACTCGGACAGTGTGTAAGAT,"Intron (5730522E02Rik-202/5730522E02Rik, intron 2 of 5)",11,25617668,26210569,592902,2,5730522E02Rik-202,517153,5730522E02Rik-202;5730522E02Rik-201;5730522E02Rik-208,5730522E02Rik;5730522E02Rik;5730522E02Rik,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,90,70626,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4976,cg09191327,-0.000000945,0.00000758,-0.124657132,0.900875791,loss,ns,0.00002,0.0000129,1.548839384,0.122440591,pos,ns,-0.000134132,0.003774284,-0.035538318,0.971673365,neg,ns,0.012479702,0.000157382,0.000129797,1.212518559,0.226237177,pos,ns,0.116019198,Prdm12,Prdm12_Exon,2,31640166,31640215,31640166,31640167,50,+,CGCTGGCCGAGGTTATCACCTCCGACATCCTGCACAGCTTCCTGTACGGC,Promoter (<=1kb),2,31640037,31655795,15759,1,Prdm12-201,129,Prdm12-201,Prdm12,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,10,381359,ENSMUSG00000079466,conserved gene and region,2,31640157,31640498,342,*,342,22,0.619883041,0.670588235,0.064327485,6.49E-13,CpGisland,TRUE,U13,Hc-P
3522,cg07982297,0.0000353,0.00000758,4.651384388,0.00000489,gain,ns,-0.0000199,0.0000129,-1.548525478,0.122516085,neg,ns,-0.004046179,0.003773643,-1.072220977,0.284454782,neg,ns,0.54598676,-0.0000411,0.000129775,-0.316616998,0.751747336,neg,ns,0.720517341,Gm12067,Gm12067_Intergenic_downstream,11,24350140,24350189,24350140,24350141,50,+,CGGCTCTTTCAGCTCCCGGCTGCCTGTCACTCAAATGGGCCTCAGCTGCA,Distal Intergenic,11,24552438,24553962,1525,2,Gm12067-201,203773,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,58,100417843,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25545,cg17047469,0.000000758,0.00000173,0.437868388,0.661786622,gain,ns,-0.00000455,0.00000294,-1.54843382,0.122538135,neg,ns,-0.001559065,0.000861515,-1.809677511,0.071314205,neg,ns,1.146823957,0.0000526,0.0000296,1.775021642,0.076875503,pos,ns,0.953533423,Ebf3,Ebf3_Intron,7,137207441,137207490,137207441,137207442,50,+,CGCCCGAAAGTTGAGGACCACAATATGATTTGACATTCCATCATACATCC,"Intron (Ebf3-204/Ebf3, intron 10 of 15)",7,137193673,137314445,120773,2,Ebf3-204,106955,Ebf3-204;Ebf3-201;Ebf3-202;Ebf3-203;Ebf3-208;Ebf3-205,Ebf3;Ebf3;Ebf3;Ebf3;Ebf3;Ebf3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,62,84,13593,ENSMUSG00000010476,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27491,cg25357376,-0.0000031,0.00000202,-1.538636656,0.124913085,loss,ns,0.0000053,0.00000342,1.548291918,0.122572279,pos,ns,0.001012822,0.00100315,1.009642148,0.313454169,pos,ns,0.50382595,-0.0000294,0.0000345,-0.850780404,0.395548012,neg,ns,0.037048821,Pbx1,Pbx1_fiveUTR,1,168431462,168431511,168431462,168431463,50,-,CGACCCCAGCATGGGAATGCATCAGCCTGGGCTGCTCGTCCATCTCCAAA,Promoter (<=1kb),1,168158732,168431504,272773,2,Pbx1-201,0,Pbx1-208;Pbx1-205;Pbx1-206;Pbx1-201;Pbx1-202;Pbx1-204;Pbx1-207,Pbx1;Pbx1;Pbx1;Pbx1;Pbx1;Pbx1;Pbx1,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,84,18514,ENSMUSG00000052534,conserved gene but different region,1,168431375,168431571,197,*,197,17,0.700507614,0.733625411,0.086294416,3.50E-12,CpGisland,TRUE,U1,Pr-A
21981,cg04023996,0.0000172,0.0000041,4.198885852,0.0000351,gain,ns,-0.0000108,0.00000696,-1.548287264,0.122573399,neg,ns,0.001086313,0.002039936,0.532522841,0.594745411,pos,ns,0.2256689,-0.0000263,0.0000702,-0.375327181,0.707673825,neg,ns,0.098449498,Dmrta2,Dmrta2_Promoter,4,109974648,109974697,109974648,109974649,50,+,CGGAGCCACCGGTTTGGGGATAATTACTTTTAATGTCAGAAAGATTTAGT,Promoter (3-4kb),4,109978053,109983687,5635,1,Dmrta2-201,-3356,Dmrta2-201,Dmrta2,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,7,13,242620,ENSMUSG00000047143,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
17370,cg16154416,0.000152457,0.0000136,11.17697141,1.35E-24,gain,yes,-0.0000359,0.0000232,-1.548247461,0.122582978,neg,ns,0.004815447,0.006788898,0.709312042,0.478663983,pos,ns,0.319969249,0.00035012,0.00023347,1.49963919,0.134725585,pos,ns,0.327058021,Rasgrf1,Rasgrf1_Exon,9,89910070,89910119,89910070,89910071,50,+,CGCAAAGGCTACCTGAGCAAGCGGAGTTCGGACAACACAAAATGGCAAAC,Promoter (<=1kb),9,89909908,89915847,5940,1,Rasgrf1-203,162,Rasgrf1-203;Rasgrf1-201;Rasgrf1-202;Rasgrf1-204,Rasgrf1;Rasgrf1;Rasgrf1;Rasgrf1,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,19417,ENSMUSG00000032356,conserved gene and region,9,89910013,89910099,87,*,87,8,0.632183908,0.935483871,0.091954023,0.00000415,CpGisland,TRUE,U3,Pr-B
9044,cg10208709,-0.00000487,0.0000129,-0.377279132,0.706224328,loss,ns,-0.0000339,0.0000219,-1.5480991,0.122618686,neg,ns,-0.010038391,0.006418228,-1.564044156,0.11882742,neg,ns,0.925083332,0.000173578,0.000220722,0.786407335,0.432229616,pos,ns,0.597418916,Gm19994,Gm19994_Intergenic_downstream,10,46698098,46698147,46698146,46698147,50,-,AACAGGGAGTTACAATAATCTAATCTTCGTGGCCTGGATACTGCCTTGCG,Distal Intergenic,10,46670144,46670729,586,1,Gm19994-201,28003,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,100503976,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25807,cg20604162,0.000000169,0.00000612,0.027688626,0.977928311,gain,ns,-0.0000161,0.0000104,-1.548073663,0.12262481,neg,ns,-0.009458414,0.003043549,-3.107692988,0.002060234,neg,ns,2.686083547,0.000171246,0.000104667,1.636098659,0.102833767,pos,ns,0.104007501,Uncx,Uncx_Intergenic_downstream,5,139550412,139550461,139550460,139550461,50,-,TCATACTTTATGAATTCAATTTCTACCAGGAGAAATTTTCAATTTGAACG,Downstream (2-3kb),5,139543898,139545268,1371,1,Uncx-202,6563,Uncx-201,Uncx,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,59,88,22255,ENSMUSG00000029546,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
17153,cg22596387,0.0000108,0.0000413,0.261103888,0.794185768,gain,ns,0.000108739,0.0000702,1.54804374,0.122632013,pos,ns,0.080602226,0.020578737,3.916772176,0.000110424,pos,ns,3.956935072,-0.001861521,0.000707701,-2.630377954,0.008954901,neg,ns,0.731620443,Rps6-ps2,Rps6-ps2_Intergenic_downstream,8,88856791,88856840,88856791,88856792,50,-,CGGGGAAGAAGCAGGTGCATTTACTTTTCAAGTATTATTTTACTAATCAA,Distal Intergenic,8,88806391,88807137,747,1,Rps6-ps2-201,50449,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,14,675985,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5478,cg02649349,-0.000000524,0.00000184,-0.285054533,0.775792709,loss,ns,0.00000484,0.00000312,1.547966235,0.122650672,pos,ns,0.000728479,0.000915083,0.79607947,0.426595031,pos,ns,0.369984208,0.00000287,0.0000315,0.091041888,0.927518107,pos,ns,0.971881081,Dnajc19,Dnajc19_threeUTR,3,34064181,34064230,34064229,34064230,50,+,GCAGACACTGATGCCAGCGAATCTCATCACAGTACTAACCGTCGTAGGCG,3' UTR,3,34056020,34081312,25293,2,Dnajc19-201,17082,Dnajc19-201;Fxr1-201;Fxr1-202;Fxr1-207;Fxr1-206;Fxr1-204;Fxr1-208,Dnajc19;Fxr1;Fxr1;Fxr1;Fxr1;Fxr1;Fxr1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,8,67713,ENSMUSG00000027679,mapped to different genes,3,34064171,34064242,72,*,72,8,0.569444444,1.391304348,0.111111111,0.000000967,CpGisland,TRUE,U10,Tr-S
3520,cg24610215,-0.00010052,0.0000165,-6.089913165,3.34E-09,loss,yes,0.0000434,0.000028,1.547802548,0.122690087,pos,ns,-0.015897034,0.008215195,-1.935076894,0.053890256,neg,ns,1.268489751,0.000211413,0.00028252,0.748310748,0.454840079,pos,ns,0.792832269,AC169509.1,AC169509.1_Intron,16,24348276,24348325,24348276,24348277,50,+,CGAGCTGCTGCCCGCTTCTGCTACTATGTGAATTTATGGAGTCCTGGTCT,"Intron (AC169509.1-202/AC169509.1, intron 2 of 4)",16,24270838,24380124,109287,2,AC169509.1-202,31799,AC169509.1-202,AC169509.1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
13664,cg02926165,0.0000903,0.00000779,11.58597846,4.94E-26,gain,yes,-0.0000205,0.0000132,-1.547661266,0.122724115,neg,ns,0.010786646,0.003878788,2.780932015,0.005751976,pos,ns,2.240182932,-0.000283845,0.000133391,-2.127916409,0.034132759,neg,ns,0.091368899,Irx1,Irx1_Promoter,13,71963726,71963775,71963726,71963727,50,+,CGGCGGGGCTTTCAGACACAATTTGAAGTTGATGCTTTGATTGGCATCCC,Promoter (<=1kb),13,71957921,71963723,5803,2,Irx1-201,-3,Irx1-201;Irx1-202;Irx1-203,Irx1;Irx1;Irx1,-3;-4293;-3010,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,8,16371,ENSMUSG00000060969,conserved gene but different region,13,71963028,71963730,703,*,703,96,0.741109531,0.994606066,0.13655761,1.68E-87,CpGisland,TRUE,U3,Pr-B
17318,cg23847618,-0.00000359,0.00000187,-1.918955854,0.055907918,loss,ns,0.00000492,0.00000318,1.547519772,0.122758201,pos,ns,0.001978411,0.00093157,2.123739038,0.034483605,pos,ns,1.462387342,-0.0000553,0.000032,-1.726633701,0.085229687,neg,ns,0.952843311,Agap1,Agap1_Intron,1,89674834,89674883,89674882,89674883,50,+,GCATAAATCTTGTTAAGTCAATGGCAGTTAATGAAGTACAAATGAGCCCG,"Intron (Agap1-201/Agap1, intron 9 of 17)",1,89454806,89897617,442812,1,Agap1-201,220028,Agap1-201;Agap1-204;Agap1-202,Agap1;Agap1;Agap1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,29,347722,ENSMUSG00000055013,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4435,cg16276649,-0.00000938,0.00000604,-1.552306433,0.121609201,loss,ns,-0.0000159,0.0000103,-1.547422434,0.122781654,neg,ns,-0.004028593,0.003008528,-1.339057542,0.181532965,neg,ns,0.741044499,-0.0000653,0.000103463,-0.631533019,0.528157468,neg,ns,0.830246096,Actn4,Actn4_Exon,7,28911501,28911550,28911549,28911550,50,+,CTGAAAAGGCATGGTAGAAGCTGGACACATAGGTCATTATGGCCTTCTCG,"Exon (Actn4-201/Actn4, exon 8 of 21)",7,28893248,28962340,69093,2,Actn4-201,50790,Actn4-201;Actn4-206;Actn4-211;Actn4-202;Actn4-208;Actn4-204;Actn4-207,Actn4;Actn4;Actn4;Actn4;Actn4;Actn4;Actn4,0;0;0;0;-3815;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,9,60595,ENSMUSG00000054808,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14060,cg19946506,-0.0000163,0.00000593,-2.740913613,0.006482333,loss,ns,0.0000156,0.0000101,1.547271435,0.122818044,pos,ns,0.018398417,0.002952775,6.230890414,1.51E-09,pos,ns,8.820743793,-0.000610979,0.000101546,-6.016790835,5.01E-09,neg,yes,0.87919124,Lnpk,Lnpk_Intron,2,74548505,74548554,74548505,74548506,50,-,CGTTAGCCAAGAGCTTTACAAAATAAAATCTCTGTGCCAATTAACTGCTG,"Intron (Lnpk-203/Lnpk, intron 6 of 13)",2,74520291,74578948,58658,2,Lnpk-203,30394,Lnpk-203;Lnpk-201;Lnpk-208;Lnpk-202;Lnpk-206;Lnpk-205;Lnpk-213;Lnpk-209;Lnpk-211;Lnpk-212,Lnpk;Lnpk;Lnpk;Lnpk;Lnpk;Lnpk;Lnpk;Lnpk;Lnpk;Lnpk,0;0;0;0;0;0;0;0;3340;30362,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,16,69605,ENSMUSG00000009207,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
236,cg14633466,-0.00000265,0.00000389,-0.681640667,0.495975112,loss,ns,0.0000102,0.00000661,1.547196257,0.122836165,pos,ns,0.00347684,0.001937732,1.794283145,0.073742267,pos,ns,1.132283518,-0.0000975,0.0000666,-1.46272874,0.144554702,neg,ns,0.930835753,Gm21992,Gm21992_threeUTR,19,4801795,4801844,4801795,4801796,50,-,CGGAACCATACCTAGTCGAGAGAAGAAGACAGTTGGTGAATGAGACAATT,3' UTR,19,4742913,4811612,68700,2,Gm21992-203,9768,Gm21992-203;Gm21992-206;Gm21992-204;Gm21992-201;Gm21992-205;Gm21992-202;Rbm14-201;Rbm14-202;Rbm14-203,Gm21992;Gm21992;Gm21992;Gm21992;Gm21992;Gm21992;Rbm14;Rbm14;Rbm14,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,21,48,102902673,ENSMUSG00000096370,mapped to different genes,19,4801605,4801812,208,*,208,24,0.586538462,1.371428571,0.115384615,3.42E-20,CpGisland,TRUE,U10,Tr-S
10455,cg13885848,0.0000126,0.00000373,3.375043195,0.00083191,gain,ns,-0.00000981,0.00000634,-1.547045704,0.12287246,neg,ns,0.002242327,0.001857409,1.207233567,0.228262524,pos,ns,0.641565386,-0.000161566,0.0000639,-2.529371014,0.011922172,neg,ns,0.924338291,Asf1a,Asf1a_Exon,10,53606187,53606236,53606187,53606188,50,+,CGAGGACAAGAATTTATTAGAGTTGGCTATTATGTAAATAATGAATATAC,"Exon (Asf1a-204/Asf1a, exon 4 of 5)",10,53596757,53607912,11156,1,Asf1a-204,9430,Asf1a-204;Asf1a-201;Asf1a-203;Asf1a-205;Asf1a-202;Mcm9-208;Mcm9-201;Mcm9-202;Mcm9-205;Mcm9-204,Asf1a;Asf1a;Asf1a;Asf1a;Asf1a;Mcm9;Mcm9;Mcm9;Mcm9;Mcm9,0;0;0;0;0;0;0;23723;6716;24203,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,5,66403,ENSMUSG00000019857,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19778,cg02308434,-0.0000251,0.00000554,-4.532056063,0.00000835,loss,ns,0.0000146,0.00000941,1.547042604,0.122873207,pos,ns,-0.0045603,0.002755647,-1.654892814,0.098958265,neg,ns,1.004547925,0.000173619,0.0000948,1.832067716,0.067900601,pos,ns,0.956354391,Fignl2,Fignl2_Exon,15,101054330,101054379,101054378,101054379,50,-,TGGAGGAGACGTCCAGGTGCTGCTCTGGCCACTGGTTGAGGGGCTGGGCG,Promoter (<=1kb),15,101050194,101054399,4206,2,Fignl2-201,20,Fignl2-201;Fignl2-202,Fignl2;Fignl2,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,668225,ENSMUSG00000095440,conserved gene and region,15,101052600,101054431,1832,*,1832,248,0.745087336,0.976172367,0.135371179,6.74E-224,CpGisland,TRUE,U13,Hc-P
13667,cg17631465,0.0000492,0.0000135,3.631031998,0.000330167,gain,ns,-0.0000356,0.000023,-1.546980163,0.122888263,neg,ns,0.021752667,0.006743894,3.225534955,0.001391632,pos,ns,2.856475501,-0.000397544,0.000231922,-1.714126844,0.087504975,neg,ns,0.658943762,Polr1a,Polr1a_Exon,6,71967939,71967988,71967987,71967988,50,+,TCAGTTCCTGCCACATGCATATTACCAGCAGGAGAAGTGCCTGAGACCCG,"Exon (Polr1a-201/Polr1a, exon 27 of 34)",6,71909061,71982475,73415,1,Polr1a-201,58878,Polr1a-201;Polr1a-203,Polr1a;Polr1a,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,20019,ENSMUSG00000049553,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10904,cg17112690,-0.00000846,0.00000633,-1.336716457,0.182295384,loss,ns,0.0000166,0.0000107,1.546971867,0.122890263,pos,ns,-0.008288633,0.00314922,-2.631963308,0.00891415,neg,ns,2.049920041,0.000317179,0.000108301,2.928672338,0.00365645,pos,ns,0.857768849,Gm29794,Gm29794_Intergenic_downstream,10,55769951,55770000,55769951,55769952,50,-,CGCTGACCATTGTTTGAAGCATTGTGATGATAACTGCATTTAAAGTTATT,Distal Intergenic,10,56100635,56102003,1369,2,Gm29794-201,332052,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,101056198,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14399,cg14269973,-0.0000122,0.000013,-0.937178977,0.349396045,loss,ns,0.0000341,0.000022,1.546883608,0.122911547,pos,ns,0.005843002,0.006452985,0.905472725,0.365918198,pos,ns,0.436615991,-0.0000862,0.000221918,-0.388651337,0.697800878,neg,ns,0.287860552,Siah3,Siah3_Promoter,14,75455867,75455916,75455915,75455916,50,+,ACATTTCTGTCCTTTTGATTGGCCGCCTCACTGCTGCAAGATTCTAACCG,Promoter (<=1kb),14,75455982,75529708,73727,1,Siah3-201,-66,Siah3-201,Siah3,-66,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,4,4,380918,ENSMUSG00000091722,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
17190,cg13045861,0.0000483,0.0000145,3.324280368,0.000992781,gain,ns,-0.0000382,0.0000247,-1.546873129,0.122914074,neg,ns,-0.000555308,0.007237044,-0.076731346,0.938886765,neg,ns,0.027386783,0.0000236,0.000248881,0.094971474,0.924398844,pos,ns,0.852370716,Gm6625,Gm6625_Intergenic_downstream,8,89130699,89130748,89130747,89130748,50,-,CAGCTGGACACGTGTTTCCCTTCTCATTAATTTAGGCTCCTAATTAATCG,Distal Intergenic,8,89146787,89147058,272,2,Gm6625-201,16359,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,7,625801,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22471,cg16314644,0.000039,0.0000144,2.709720723,0.007108661,gain,ns,-0.0000378,0.0000244,-1.546849033,0.122919885,neg,ns,0.028445543,0.007158177,3.973852838,0.000088,pos,ns,4.055421165,-0.001007185,0.000246169,-4.091433767,0.0000547,neg,ns,0.331876938,Gm12830,Gm12830_Intergenic_upstream,4,114779454,114779503,114779454,114779455,50,-,CGGTGGTCGTGAATAAAAGAGAAACATTCATTTATGGTAATTGGTTTCAG,Distal Intergenic,4,114821722,114856166,34445,1,Gm12830-201,-42268,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,12,26,433746,ENSMUSG00000055198,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6533,cg05991704,-0.0000706,0.0000118,-6.001725684,5.45E-09,loss,yes,0.0000309,0.00002,1.546839884,0.122922092,pos,ns,-0.01690745,0.005855489,-2.887453214,0.004156817,neg,ns,2.381239098,0.000440477,0.00020137,2.187403156,0.029459814,pos,ns,0.783990552,Zfp536,Zfp536_Intron,7,37639846,37639895,37639846,37639847,50,-,CGGAGGGAGGGAAAAGCCGGCAAGTTGTCAGGCACTATCTGTCAGAGTGA,"Intron (Zfp536-202/Zfp536, intron 4 of 6)",7,37479104,37769624,290521,2,Zfp536-202,129729,Zfp536-202;Zfp536-201;Zfp536-203;Zfp536-206;Zfp536-209;Zfp536-208,Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,73,112,243937,ENSMUSG00000043456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20903,cg17880536,0.000109741,0.00000899,12.20052333,3.16E-28,gain,yes,-0.0000236,0.0000153,-1.546790725,0.122933948,neg,ns,-0.001546478,0.0044768,-0.345442797,0.729995794,neg,ns,0.136679642,0.000349556,0.000153957,2.270483115,0.023864245,pos,ns,0.288448899,Pax6,Pax6_Exon,2,105685786,105685835,105685834,105685835,50,+,AATAAACAGAGTTCTTCGCAACCTGGCTAGCGAAAAGCAACAGATGGGCG,"Exon (Pax6-206/Pax6, exon 7 of 13)",2,105668900,105697364,28465,1,Pax6-206,16886,Pax6-206;Pax6-207;Pax6-210;Pax6-214;Pax6-208;Pax6-202;Pax6-205;Pax6-225;Pax6-204;Pax6-201;Pax6-203;Pax6-224;Pax6-219;Pax6-221;Pax6-213;Pax6-211;Pax6-222;Pax6-212;Pax6-215;Pax6-223;Pax6-209;Pax6-216,Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,31,78,18508,ENSMUSG00000027168,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
632,cg11134720,0.000016,0.00000269,5.938981035,7.69E-09,gain,yes,-0.00000707,0.00000457,-1.546593379,0.122981555,neg,ns,0.002910548,0.001338862,2.173898068,0.030469176,pos,ns,1.516139295,-0.0000898,0.000046,-1.949408953,0.052148129,neg,ns,0.081371666,Zfp804b,Zfp804b_Exon,5,7344326,7344375,7344326,7344327,50,+,CGGTAGTGCCCATTGCTGAGATGTCTCGAACTGATGACCAGGTAACAAGC,Promoter (<=1kb),5,6769010,7344756,575747,2,Zfp804b-202,381,Zfp804b-202,Zfp804b,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,207618,ENSMUSG00000092094,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
17888,cg26478990,0.0000406,0.0000064,6.345423181,7.86E-10,gain,yes,-0.0000168,0.0000109,-1.546334235,0.123044092,neg,ns,0.005480479,0.003184999,1.720716259,0.086300145,pos,ns,1.063988476,0.0000323,0.000109532,0.294850682,0.768305307,pos,ns,0.076725709,Irx5,Irx5_Exon,8,92360797,92360846,92360797,92360798,50,+,CGCTTTGGCTAAAGACCCGAAAATGTTGCGGAGCCAGTCTCAGCTAGACC,"Exon (Irx5-202/Irx5, exon 3 of 5)",8,92357625,92376286,18662,1,Irx5-202,3172,Irx5-202;Irx5-201,Irx5;Irx5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,30,54352,ENSMUSG00000031737,conserved gene but different region,8,92359785,92360826,1042,*,1042,106,0.674664108,0.894058605,0.101727447,3.80E-81,CpGisland,TRUE,U13,Hc-P
12803,cg07714894,-0.00000154,0.00000189,-0.816084834,0.415078243,loss,ns,0.00000497,0.00000321,1.545817083,0.123168967,pos,ns,0.002204276,0.000941152,2.342105231,0.019807977,pos,ns,1.703159887,-0.00008,0.0000324,-2.472899482,0.013938201,neg,ns,0.96256154,Rsrc1,Rsrc1_Intron,3,67221854,67221903,67221902,67221903,50,+,GATGAGTTTATGATTGACCCTTCTAACTCAGAGCCCATTAGTCATTGTCG,"Intron (Rsrc1-206/Rsrc1, intron 6 of 9)",3,66981390,67356559,375170,1,Rsrc1-206,240464,Rsrc1-206;Rsrc1-203;Rsrc1-202;Rsrc1-201;Rsrc1-209;Rsrc1-205,Rsrc1;Rsrc1;Rsrc1;Rsrc1;Rsrc1;Rsrc1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,37,66880,ENSMUSG00000034544,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20732,cg03544250,0.000000623,0.00000325,0.191436635,0.848308844,gain,ns,0.00000854,0.00000552,1.545748652,0.123185498,pos,ns,0.002863913,0.001618635,1.769338129,0.077820593,pos,ns,1.108905467,-0.000113558,0.0000557,-2.040039779,0.042193661,neg,ns,0.922367799,Dicer1,Dicer1_Exon,12,104705182,104705231,104705230,104705231,50,-,TCAGTGTACACATCAGCTACATAAAATCGATGAGGCTGATCAAAATTGCG,"Exon (Dicer1-201/Dicer1, exon 18 of 27)",12,104687742,104751952,64211,2,Dicer1-201,46721,Dicer1-201;Dicer1-206;Dicer1-204;Dicer1-205,Dicer1;Dicer1;Dicer1;Dicer1,0;0;0;-4680,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,12,192119,ENSMUSG00000041415,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18494,cg11917424,0.00000316,0.0000019,1.660365121,0.097852123,gain,ns,-0.00000499,0.00000323,-1.5455673,0.123229316,neg,ns,-0.002067018,0.000946652,-2.183504509,0.029748186,neg,ns,1.526539512,0.0000193,0.0000326,0.591371984,0.554702175,pos,ns,0.953738098,Gm8637,Gm8637_Intergenic_downstream,8,96078164,96078213,96078164,96078165,50,+,CGCACCTGTCTGGGATGCTTATAGATTTGATTAGATAACATTTGTCAGCT,Distal Intergenic,8,95921529,95922613,1085,1,Gm8637-201,156635,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,4,667445,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4553,cg06998842,-0.0000179,0.00000517,-3.456222357,0.00062425,loss,ns,0.0000136,0.00000879,1.545525158,0.1232395,pos,ns,-0.000082,0.002573893,-0.031856658,0.974606864,neg,ns,0.011170534,-0.0000957,0.0000885,-1.081696677,0.280228054,neg,ns,0.911573857,Ntm,Ntm_Intron,9,29700077,29700126,29700125,29700126,50,+,ATAAGCCGTCTGCAGTATAGTTAACTTTCAATTTCAGCCAATTTTCGACG,"Intron (Ntm-201/Ntm, intron 1 of 7)",9,28994750,29963129,968380,2,Ntm-201,263003,Ntm-201;Ntm-204;Ntm-210;Ntm-207,Ntm;Ntm;Ntm;Ntm,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,27,32,235106,ENSMUSG00000059974,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24760,cg19478904,-0.0000322,0.00000628,-5.133659801,0.000000503,loss,yes,-0.0000165,0.0000107,-1.545429847,0.123262536,neg,ns,-0.008473689,0.003125482,-2.711162336,0.007078553,neg,ns,2.150055538,0.000240306,0.000107485,2.235714731,0.026082057,pos,ns,0.810640075,Ankrd52,Ankrd52_Exon,10,128378126,128378175,128378126,128378127,50,+,CGTAGGCGATGTCCCCATCCTCCAGTTGCTACTGATGTCAGGTGAAAGTG,"Exon (Ankrd52-203/Ankrd52, exon 3 of 15)",10,128377115,128385496,8382,1,Ankrd52-203,1011,Ankrd52-203;Ankrd52-201,Ankrd52;Ankrd52,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,12,237615,ENSMUSG00000014498,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U4,Pr-F
23751,cg19619003,0.000017,0.0000212,0.801935274,0.423204698,gain,ns,0.0000557,0.000036,1.54540967,0.123267413,pos,ns,0.031579915,0.010555943,2.991671603,0.002997242,pos,ns,2.523278243,-0.000853104,0.000363018,-2.350031779,0.019398568,neg,ns,0.502890063,Foxo6,Foxo6_Intron,4,120269717,120269766,120269717,120269718,50,-,CGGTGACTGATTAAGCCCTGTTTAGAACTAATTGCTCTTTCGTGTGTGGG,"Intron (Foxo6-201/Foxo6, intron 1 of 1)",4,120267079,120287349,20271,2,Foxo6-201,17583,Foxo6-201,Foxo6,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,14,42,329934,ENSMUSG00000052135,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
27903,cg03078414,-0.0000121,0.0000062,-1.948430965,0.052265484,loss,ns,-0.0000163,0.0000105,-1.545405586,0.1232684,neg,ns,-0.004050843,0.003087429,-1.312044053,0.190475988,neg,ns,0.720159766,-0.000016,0.000106176,-0.150579224,0.880405582,neg,ns,0.928299056,Prox1,Prox1_Exon,1,190161614,190161663,190161662,190161663,50,+,TTGCTTGCGTTTGTTTTCTCTGTAACTTTCTCGGGGACTCACAGACTGCG,"Exon (Prox1-202/Prox1, exon 2 of 5)",1,190118035,190170714,52680,2,Prox1-202,9051,Prox1-202;Prox1-201;Prox1-203,Prox1;Prox1;Prox1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,19,59,19130,ENSMUSG00000010175,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6882,cg24164819,-0.00000148,0.00000137,-1.081089386,0.280497649,loss,ns,-0.00000358,0.00000232,-1.545329869,0.123286703,neg,ns,-0.000310831,0.00067956,-0.457401149,0.647703129,neg,ns,0.188624005,0.0000211,0.0000234,0.900745181,0.368423043,pos,ns,0.063969748,Kdm7a,Kdm7a_Intron,6,39205479,39205528,39205527,39205528,50,+,GGCGCCGCCCTTTATTAGCCTCACACTTTGATTACAAAACACACGAGTCG,"Intron (Kdm7a-201/Kdm7a, intron 1 of 19)",6,39136623,39206789,70167,2,Kdm7a-201,1261,Kdm7a-201,Kdm7a,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,8,338523,ENSMUSG00000042599,conserved gene and region,6,39205446,39207371,1926,*,1926,267,0.729491173,1.042169774,0.138629284,2.72E-244,CpGisland,TRUE,U1,Pr-A
1627,cg19825690,0.000000212,0.000003,0.070634536,0.943734168,gain,ns,0.00000788,0.0000051,1.545309895,0.123291532,pos,ns,0.002165055,0.00149304,1.450098702,0.148041974,pos,ns,0.829615134,-0.0000584,0.0000513,-1.136552675,0.256603145,neg,ns,0.943990535,Zfp521,Zfp521_Intron,18,13897336,13897385,13897384,13897385,50,+,GTATTAGTGATGTACGACTTAATAACCCAGCAGCTCCAAAAGTGCTGCCG,"Intron (Zfp521-201/Zfp521, intron 3 of 7)",18,13687013,13972787,285775,2,Zfp521-201,75402,Zfp521-201;Zfp521-204;Zfp521-203;Zfp521-202,Zfp521;Zfp521;Zfp521;Zfp521,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,81,225207,ENSMUSG00000024420,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6700,cg04222851,0.0000381,0.00000772,4.929190114,0.00000135,gain,yes,-0.0000203,0.0000131,-1.545264418,0.123302526,neg,ns,0.015989356,0.003844391,4.159139023,0.0000414,pos,ns,4.382983264,-0.000500639,0.000132208,-3.786744881,0.000183281,neg,ns,0.768438008,Dennd1a,Dennd1a_threeUTR,2,38126520,38126569,38126568,38126569,50,-,CTCCCTTACCTTAAGATACAGAAGCAGCTCTTCGCTCCTGAAGATAAGCG,3' UTR,2,37798991,38287375,488385,2,Dennd1a-201,160806,Dennd1a-201;Dennd1a-207;Dennd1a-210;Dennd1a-204;Dennd1a-202;Dennd1a-209;Dennd1a-208,Dennd1a;Dennd1a;Dennd1a;Dennd1a;Dennd1a;Dennd1a;Dennd1a,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,46,227801,ENSMUSG00000035392,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25331,cg15023416,-0.00000548,0.00000374,-1.46447475,0.144077631,loss,ns,0.00000983,0.00000636,1.545252452,0.123305419,pos,ns,0.00347573,0.001862737,1.865926841,0.062995857,pos,ns,1.200688011,-0.0000919,0.0000641,-1.434627294,0.152401362,neg,ns,0.927427866,Srrm1,Srrm1_Exon,4,135329028,135329077,135329028,135329029,50,+,CGCTTTCCCATCTGCATCCTGAGAGCAGTGGAGAAAAACAAATGTCAAGA,"Exon (Srrm1-202/Srrm1, exon 13 of 18)",4,135320484,135353321,32838,2,Srrm1-203,24244,Srrm1-203;Srrm1-202;Srrm1-208;Srrm1-201;Srrm1-211;Srrm1-212;Srrm1-210;Srrm1-215;Srrm1-213;Srrm1-204,Srrm1;Srrm1;Srrm1;Srrm1;Srrm1;Srrm1;Srrm1;Srrm1;Srrm1;Srrm1,0;0;0;0;-1805;0;-4179;3156;8996;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,8,51796,ENSMUSG00000028809,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13329,cg13880561,0.0000143,0.00000674,2.121215317,0.034697061,gain,ns,0.0000177,0.0000114,1.544532618,0.123479551,pos,ns,0.004977535,0.003353318,1.484361078,0.138729221,pos,ns,0.857832052,-0.000135082,0.00011532,-1.17136574,0.242351336,neg,ns,0.570287044,Gm44690,Gm44690_Intergenic_upstream,7,70113743,70113792,70113743,70113744,50,-,CGGCAGGGTTATCACCAGAATTGGGAGGTGGAATGTAGGTCTCCCACCCA,Distal Intergenic,7,69883979,69884360,382,2,Gm44690-201,-229432,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,15,24,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20252,cg16594733,0.0000141,0.0000034,4.161627264,0.000041,gain,ns,0.00000892,0.00000577,1.544352357,0.123523187,pos,ns,0.002594764,0.001691326,1.53415988,0.126010245,pos,ns,0.899594144,-0.0000423,0.0000582,-0.727382494,0.467540647,neg,ns,0.101529999,Hoxc10,Hoxc10_Exon,15,102970953,102971002,102971001,102971002,50,+,AAGACCATTAACCTTACAGACAGACAAGTCAAAATCTGGTTTCAAAATCG,"Exon (Hoxc10-201/Hoxc10, exon 2 of 2)",15,102966796,102971893,5098,1,Hoxc10-201,4157,Hoxc10-201;Hoxc5-202,Hoxc10;Hoxc5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,21,209448,ENSMUSG00000022484,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
26278,cg12492738,-0.00000683,0.000007,-0.974575212,0.330530873,loss,ns,-0.0000184,0.0000119,-1.544314047,0.123532462,neg,ns,-0.002082939,0.003485608,-0.597582525,0.550554788,neg,ns,0.259199456,0.00000288,0.00011987,0.024006297,0.980863031,pos,ns,0.062843596,Cfap61,Cfap61_Intergenic_downstream,2,146217466,146217515,146217514,146217515,50,+,ACACATCACTGAACAAATAGGCTCTCTCTAGACAAATAAAATAACACACG,Distal Intergenic,2,146214613,146214795,183,1,Cfap61-214,2853,Cfap61-206;Cfap61-209;Cfap61-208;Cfap61-210;Cfap61-214;Insm1-201,Cfap61;Cfap61;Cfap61;Cfap61;Cfap61;Insm1,0;170215;65122;3201;2853;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,13,78774,ENSMUSG00000037143,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
25526,cg26089982,-0.0000261,0.00000494,-5.275472785,0.000000249,loss,yes,0.000013,0.0000084,1.544277368,0.123541343,pos,ns,0.006774079,0.00246076,2.752840745,0.006256341,pos,ns,2.203679579,-0.000285332,0.0000846,-3.371707552,0.000841686,neg,ns,0.861381325,Gm15041,Gm15041_Intergenic_downstream,X,137162685,137162734,137162685,137162686,50,-,CGGTCAGTTGCAACCCTTGATGTAAGTAATTTCCAGCAATACTGTATGCA,Distal Intergenic,20,137130916,137131671,756,1,Gm15041-201,31818,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,436232,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7925,cg04518473,-0.00000298,0.00000125,-2.373383268,0.018235328,loss,ns,0.00000329,0.00000213,1.544253284,0.123547175,pos,ns,0.001356827,0.000624144,2.173899318,0.030469081,pos,ns,1.516140646,-0.0000356,0.0000215,-1.656742296,0.098583305,neg,ns,0.963141889,Gtdc1,Gtdc1_Exon,2,44633290,44633339,44633338,44633339,50,-,GTCAGCTTCTACCTTGTATGTCCCCAGGCATCAGTAAAATTGACTGCACG,"Exon (Gtdc1-204/Gtdc1, exon 6 of 6)",2,44564412,44861622,297211,2,Gtdc1-203,228283,Gtdc1-203;Gtdc1-201;Gtdc1-205;Gtdc1-210;Gtdc1-204;Gtdc1-211,Gtdc1;Gtdc1;Gtdc1;Gtdc1;Gtdc1;Gtdc1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,43,227835,ENSMUSG00000036890,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26733,cg26221733,0.0000023,0.00000304,0.755169125,0.450720866,gain,ns,-0.00000798,0.00000517,-1.54413971,0.123574679,neg,ns,-0.00247163,0.001513683,-1.63285863,0.103513984,neg,ns,0.985000974,0.0000967,0.0000521,1.857207379,0.064229913,pos,ns,0.918938736,Huwe1,Huwe1_Exon,X,151907378,151907427,151907378,151907379,50,-,CGATTTGAGCGCTTTGACCGGGAGGATGATCTCATCATTGAGTTTGACAA,"Exon (Huwe1-201/Huwe1, exon 54 of 83)",20,151803327,151935417,132091,1,Huwe1-201,104051,Huwe1-201;Huwe1-202;Huwe1-219;Huwe1-208;Huwe1-215,Huwe1;Huwe1;Huwe1;Huwe1;Huwe1,0;0;0;-1418;-1418,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,22,28,59026,ENSMUSG00000025261,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20742,cg16204764,0.000146047,0.0000127,11.49890876,1.00E-25,gain,yes,-0.0000333,0.0000216,-1.543962379,0.123617632,neg,ns,0.027599317,0.006321398,4.366015085,0.0000173,pos,ns,4.762805009,-0.000273364,0.000217392,-1.257466889,0.209531093,neg,ns,0.261530051,C8a,C8a_Intron,4,104835213,104835262,104835261,104835262,50,-,AGAGCCAAGAAACTAGGAGTCTGTCAGTCAATCAATACCATCCATCACCG,"Intron (C8a-204/C8a, intron 2 of 2)",4,104815679,104856523,40845,2,C8a-204,21261,C8a-204;C8a-203;C8a-201;C8a-202,C8a;C8a;C8a;C8a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,230558,ENSMUSG00000035031,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19487,cg19346563,-0.0000144,0.00000717,-2.004454997,0.045890785,loss,ns,0.0000188,0.0000122,1.543943911,0.123622106,pos,ns,-0.001741909,0.003570088,-0.487917536,0.625953157,neg,ns,0.203458166,-0.000110605,0.000122775,-0.900873847,0.368354729,neg,ns,0.779930518,Pja1,Pja1_Intron,X,99410144,99410193,99410144,99410145,50,+,CGCTGAGGCTCAGTTTACTCCTGGCTGGGCTCTGGGCCTGCACCTGGGTT,"Intron (Gm14812-201/Gm14812-201, intron 6 of 6)",20,99466146,99470672,4527,2,Pja1-204,60479,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,17,18744,ENSMUSG00000034403,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13230,cg06724527,-0.00000721,0.00000513,-1.404935496,0.16104171,loss,ns,0.0000135,0.00000872,1.543929934,0.123625491,pos,ns,0.001969337,0.002554786,0.770842284,0.44138752,pos,ns,0.355179951,-0.0000373,0.0000879,-0.424292149,0.671647056,neg,ns,0.918132299,Aff2,Aff2_Intron,X,69818161,69818210,69818209,69818210,50,+,CTGGTAACTAAGCAGCCAAATTATAGTCCAAGCACTTGGCAAATACACCG,"Intron (Aff2-201/Aff2, intron 8 of 19)",20,69360294,69868037,507744,1,Aff2-201,457867,Aff2-201,Aff2,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,5,14266,ENSMUSG00000031189,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22097,cg14092779,0.000000368,0.00000269,0.136870594,0.89122193,gain,ns,-0.00000705,0.00000456,-1.543904893,0.123631558,neg,ns,-0.001057064,0.001336892,-0.790687271,0.429730978,neg,ns,0.366803338,-0.0000229,0.000046,-0.498408721,0.618549421,neg,ns,0.924624764,Cog4,Cog4_threeUTR,8,110868286,110868335,110868334,110868335,50,-,CATCATGCACAGCAGCCTCCAGCAAGGCAAATTTGACACAAAAGGCATCG,3' UTR,8,110846600,110881895,35296,1,Cog4-202,21686,Cog4-202;Cog4-201;Cog4-210;Cog4-211;Cog4-207;Cog4-204;Cog4-208,Cog4;Cog4;Cog4;Cog4;Cog4;Cog4;Cog4,0;0;0;0;0;0;5186,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,1,102339,ENSMUSG00000031753,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22071,cg22903399,0.00000699,0.0000157,0.446750489,0.655367161,gain,ns,-0.0000411,0.0000266,-1.543894397,0.123634101,neg,ns,0.026658133,0.007792397,3.421044125,0.000707451,pos,ns,3.15030385,-0.000754423,0.00026798,-2.815224023,0.005186359,neg,ns,0.686626056,Vac14,Vac14_Intron,8,110716231,110716280,110716279,110716280,50,-,CACTTGTCAGGTCGCCATGGAAACCAGCAGAGCCACTGAGAAGATTTACG,"Intron (Vac14-205/Vac14, intron 18 of 18)",8,110618585,110720396,101812,1,Vac14-205,97646,Vac14-205;Vac14-201;Vac14-202;Vac14-204;Vac14-206,Vac14;Vac14;Vac14;Vac14;Vac14,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,3,234729,ENSMUSG00000010936,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4625,cg16524605,-0.00000308,0.00000196,-1.570532004,0.117311483,loss,ns,0.00000514,0.00000333,1.543816326,0.123653017,pos,ns,0.001355271,0.000975244,1.389673421,0.165625265,pos,ns,0.780873415,-0.0000432,0.0000335,-1.287160994,0.1989984,neg,ns,0.079763893,E2f3,E2f3_Exon,13,29985539,29985588,29985587,29985588,50,+,AGCCGGGGCTGGCTAGCAGTGCCCTTTTGTCCATGGAGGCTGCAGCGGCG,Promoter (<=1kb),13,29906575,29986063,79489,2,E2f3-201,475,E2f3-203;E2f3-204;E2f3-201;E2f3-202,E2f3;E2f3;E2f3;E2f3,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,10,13557,ENSMUSG00000016477,conserved gene but different region,13,29985584,29985978,395,*,395,35,0.612658228,0.948411882,0.088607595,5.51E-25,CpGisland,TRUE,U1,Pr-A
14253,cg25807826,0.0000414,0.00000589,7.027452028,1.34E-11,gain,yes,-0.0000155,0.00001,-1.543674439,0.123687401,neg,ns,-0.005123673,0.002933791,-1.746433983,0.081726048,neg,ns,1.087639501,0.000261229,0.000100893,2.589170573,0.01007449,pos,ns,0.750786305,Ihh,Ihh_Intergenic_upstream,1,74964913,74964962,74964913,74964914,50,+,CGGAATAAAATTTATGGAGCAGCCACGAGAATTCGACCCTTTTATGTGCA,Downstream (2-3kb),1,74945315,74951672,6358,2,Ihh-201,-13241,Nhej1-201,Nhej1,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_upstream,2,3,16147,ENSMUSG00000006538,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15969,cg17611288,-0.0000214,0.00000742,-2.879545609,0.004259665,loss,ns,0.0000195,0.0000126,1.543583117,0.123709535,pos,ns,0.002011982,0.003693292,0.54476653,0.586305773,pos,ns,0.231875829,-0.000240565,0.000127012,-1.894031506,0.059151567,neg,ns,0.796281903,Epha5,Epha5_Exon,5,84067378,84067427,84067426,84067427,50,-,ACAGCGTCCATTGAACTGTATCCATTTTCCATGAAAATCTCTGTATACCG,"Exon (Epha5-201/Epha5, exon 15 of 16)",5,84054761,84416921,362161,2,Epha5-201,349494,Epha5-201;Epha5-205;Epha5-206;Epha5-202;Epha5-203;Epha5-204,Epha5;Epha5;Epha5;Epha5;Epha5;Epha5,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,9,13839,ENSMUSG00000029245,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8,cg20846390,-0.00000301,0.00000151,-1.995417715,0.046872239,loss,ns,0.00000396,0.00000256,1.543454337,0.123740753,pos,ns,0.001126524,0.000750847,1.500338468,0.13454451,pos,ns,0.871134019,-0.0000224,0.0000258,-0.868700808,0.385682837,neg,ns,0.956648846,Xkr4,Xkr4_threeUTR,1,3214444,3214493,3214492,3214493,50,-,GTTATTCCACTCTGCACCAACTATAAAAAAATACTATCAAAGTTTGACCG,3' UTR,1,3205901,3216344,10444,2,Xkr4-203,1851,Xkr4-203;Xkr4-202;Xkr4-201,Xkr4;Xkr4;Xkr4,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,497097,ENSMUSG00000051951,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18324,cg03806737,0.00003,0.00000301,9.94741502,2.05E-20,gain,yes,-0.00000789,0.00000512,-1.543438565,0.123744577,neg,ns,-0.002452264,0.001498579,-1.636393376,0.102772071,neg,ns,0.988124891,0.000136989,0.0000515,2.658127882,0.008265219,pos,ns,0.079862562,Gm48316,Gm48316_Intergenic_upstream,13,94710344,94710393,94710344,94710345,50,+,CGAGCGGCAAAGCCTGCAGCCTCCCAGAGCTTCCAACTGCCTGATAGTGG,Distal Intergenic,13,94752270,94752593,324,1,Gm48316-201,-41877,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,36,42,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
11757,cg14871095,0.00000621,0.00000422,1.473266318,0.141693875,gain,ns,-0.0000111,0.00000716,-1.543376712,0.123759574,neg,ns,-0.000594193,0.00209785,-0.283238858,0.777182794,neg,ns,0.109476823,-0.0000304,0.0000721,-0.420780139,0.67420719,neg,ns,0.903158092,Raph1,Raph1_Exon,1,60490299,60490348,60490299,60490300,50,+,CGATTCATAGACTCCATTCTGGCCTAAAAGGAGTATAAAAAGGGAGTGGG,"Exon (Raph1-204/Raph1, exon 14 of 14)",1,60482292,60566779,84488,2,Raph1-204,76431,Raph1-204;Raph1-206;Raph1-201;Raph1-202;Raph1-207,Raph1;Raph1;Raph1;Raph1;Raph1,0;0;0;76421;5933,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,77300,ENSMUSG00000026014,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7438,cg22141415,0.0000171,0.00000279,6.123535696,2.77E-09,gain,yes,-0.00000731,0.00000474,-1.543332565,0.123770279,neg,ns,0.001467112,0.001388503,1.056614078,0.291510462,pos,ns,0.535345854,0.0000406,0.0000478,0.84968284,0.396157159,pos,ns,0.066200667,Ostm1,Ostm1_Intron,10,42632689,42632738,42632689,42632690,50,-,CGGGAAAAGAAAAGCAACAATAACCAAGTCAAGCGTAAAAAATGAAAGAG,"Intron (Ostm1-202/Ostm1, intron 2 of 5)",10,42583835,42698323,114489,1,Ostm1-202,48854,Ostm1-202;Ostm1-203,Ostm1;Ostm1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,21,22,14628,ENSMUSG00000038280,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
20885,cg20014398,0.0000324,0.00000286,11.30000562,5.02E-25,gain,yes,-0.00000751,0.00000487,-1.543329951,0.123770912,neg,ns,0.003581878,0.001425889,2.512031658,0.012511633,pos,ns,1.902685992,-0.0000179,0.000049,-0.364733456,0.715559069,neg,ns,0.044713873,Pax6,Pax6_Exon,2,105682338,105682387,105682338,105682339,50,-,CGACTGATCTTTTCAATTAGCCTTCCATGCATGATCCGGAGCGACTTCCG,"Exon (Pax6-221/Pax6, exon 1 of 2)",2,105668900,105697364,28465,1,Pax6-206,13438,Pax6-206;Pax6-207;Pax6-210;Pax6-214;Pax6-208;Pax6-202;Pax6-205;Pax6-225;Pax6-204;Pax6-201;Pax6-203;Pax6-224;Pax6-219;Pax6-221;Pax6-213;Pax6-211;Pax6-222;Pax6-212;Pax6-215;Pax6-223;Pax6-209;Pax6-216,Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,31,78,18508,ENSMUSG00000027168,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8154,cg13010823,-0.000000634,0.00000437,-0.144943826,0.884849414,loss,ns,-0.0000115,0.00000743,-1.542964858,0.123859468,neg,ns,-0.006462169,0.002175351,-2.970632514,0.003204179,neg,ns,2.494283219,0.000205227,0.0000748,2.743307369,0.006436394,pos,ns,0.789503251,Ebf1,Ebf1_Intron,11,44800916,44800965,44800964,44800965,50,-,GGGGCCTAATAGTCAGCCTTGTAACATCAACTGGTTACCCCCCTCGTGCG,"Intron (Ebf1-203/Ebf1, intron 6 of 15)",11,44617317,45004995,387679,1,Ebf1-203,183599,Ebf1-203;Ebf1-202;Ebf1-201,Ebf1;Ebf1;Ebf1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,80,13591,ENSMUSG00000057098,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18008,cg03706830,0.000048,0.0000102,4.707022941,0.0000038,gain,ns,0.0000267,0.0000173,1.542799472,0.123899599,pos,ns,-0.002022211,0.005070364,-0.398829487,0.690293431,neg,ns,0.160966259,0.000108481,0.000174369,0.622133645,0.534311294,pos,ns,0.674149878,Arx,Arx_Intergenic_downstream,X,93302002,93302051,93302002,93302003,50,+,CGAGCACTTTGCAATAGAACCTGCGCTCCTTTGACACCCTCAGGTACTTA,Downstream (2-3kb),20,93286510,93298062,11553,1,Arx-202,15492,Arx-201;Arx-202;Pola1-201,Arx;Arx;Pola1,0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,8,32,11878,ENSMUSG00000035277,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21115,cg07158747,0.0000441,0.00000327,13.45592511,8.04E-33,gain,yes,-0.00000858,0.00000556,-1.542730004,0.123916459,neg,ns,0.005723093,0.001629865,3.511390508,0.000511971,pos,ns,3.290754995,-0.0000756,0.0000561,-1.348848286,0.178370176,neg,ns,0.104854919,Barhl2,Barhl2_Exon,5,106470934,106470983,106470982,106470983,50,+,AGCAAAACTAATATGTGTAAATGCTTTAAAGCAATAATCTGCTTACAGCG,"Exon (Gm26872-201/Gm26872-201, exon 1 of 2)",5,106452523,106458166,5644,2,Barhl2-201,-12768,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,27,104382,ENSMUSG00000034384,conserved gene but different region,5,106470982,106471076,95,*,95,10,0.610526316,1.19949495,0.105263158,3.77E-08,CpGisland,TRUE,U3,Pr-B
6929,cg09084634,-0.00000144,0.00000118,-1.214317645,0.225550669,loss,ns,-0.0000031,0.00000201,-1.542497286,0.123972952,neg,ns,0.000305034,0.000589134,0.517766841,0.604990245,pos,ns,0.218251628,0.0000149,0.0000203,0.734613699,0.463130109,pos,ns,0.956396679,Braf,Braf_Exon,6,39651684,39651733,39651684,39651685,50,+,CGATGATCTTCATCTGCTGGTCGGAAGGGCTGTGGAATTGGAATGGATTT,"Exon (Braf-201/Braf, exon 9 of 22)",6,39603237,39725463,122227,2,Braf-201,73730,Braf-201;Braf-202;Braf-205;Fth-ps2-201,Braf;Braf;Braf;Fth-ps2,0;0;0;2232,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,109880,ENSMUSG00000002413,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
442,cg25549238,-0.0000025,0.00000111,-2.250870257,0.025094205,loss,ns,-0.00000291,0.00000189,-1.542496772,0.123973077,neg,ns,0.001395597,0.000553144,2.52302643,0.012134926,pos,ns,1.915962857,-0.000053,0.000019,-2.783705212,0.005704238,neg,ns,0.967423012,Snx9,Snx9_Exon,17,5928210,5928259,5928258,5928259,50,-,ATGAATCACTTTCACAGTAACCGGATCTATGATTACAACAGTGTCATCCG,"Exon (Snx9-201/Snx9, exon 17 of 18)",17,5841329,5931954,90626,1,Snx9-201,86881,Snx9-201,Snx9,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,66616,ENSMUSG00000002365,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27079,cg16215795,-0.000015,0.00000561,-2.679635087,0.007763953,loss,ns,-0.0000147,0.00000954,-1.542309872,0.124018463,neg,ns,-0.001887034,0.002794599,-0.675243275,0.500024552,neg,ns,0.30100867,-0.0000861,0.0000961,-0.895631758,0.371144382,neg,ns,0.936650255,Ctnnbl1,Ctnnbl1_Intron,2,157837002,157837051,157837050,157837051,50,+,TCATGTATTTCTGTACTAAAGTATGATTCAGCCAACATCAGGAATTGCCG,"Intron (Ctnnbl1-201/Ctnnbl1, intron 11 of 15)",2,157737401,157891614,154214,1,Ctnnbl1-201,99601,Ctnnbl1-201;Ctnnbl1-204,Ctnnbl1;Ctnnbl1,0;47138,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,8,66642,ENSMUSG00000027649,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19183,cg24324784,-0.0000107,0.00000413,-2.579944673,0.010341701,loss,ns,-0.0000108,0.00000702,-1.542267328,0.124028795,neg,ns,-0.003115995,0.002057595,-1.514387132,0.130946574,neg,ns,0.88290586,-0.000238228,0.0000708,-3.366683647,0.000856612,neg,ns,0.866245267,Thra,Thra_threeUTR,11,98764505,98764554,98764553,98764554,50,-,GTCTTTGAGGATCAGGAAGTCTAAAGCCTCAGGCGGCCAGAGGGTGTGCG,3' UTR,11,98741811,98769006,27196,1,Thra-201,22694,Nr1d1-201;Nr1d1-202;Thra-201;Thra-202;Thra-203,Nr1d1;Nr1d1;Thra;Thra;Thra,0;5872;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,18,21833,ENSMUSG00000058756,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5748,cg10859648,0.000128902,0.0000104,12.39726285,6.14E-29,gain,yes,-0.0000272,0.0000177,-1.542256362,0.124031459,neg,ns,0.014250781,0.00517502,2.753763376,0.00623916,pos,ns,2.204873885,-0.000430042,0.000177969,-2.416391161,0.016252669,neg,ns,0.227150455,Kctd15,Kctd15_Exon,7,34652891,34652940,34652891,34652892,50,-,CGAGCAGAGAGAAGTGAGCAGAATGCCACGCTCATTTACACACAAAATGA,"Exon (Kctd15-204/Kctd15, exon 1 of 2)",7,34639014,34654398,15385,2,Kctd15-202,1458,Kctd15-202;Kctd15-203;Kctd15-201;Kctd15-206;Kctd15-208;Kctd15-204;Kctd15-205;Kctd15-207,Kctd15;Kctd15;Kctd15;Kctd15;Kctd15;Kctd15;Kctd15;Kctd15,0;0;0;-4147;0;0;0;3792,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,25,233107,ENSMUSG00000030499,conserved gene but different region,7,34652754,34652920,167,*,167,14,0.694610778,0.696870343,0.083832335,6.26E-10,CpGisland,TRUE,U13,Hc-P
13102,cg03446744,-0.00000199,0.00000168,-1.179717263,0.239017212,loss,ns,-0.00000441,0.00000286,-1.542227354,0.124038505,neg,ns,-0.00179217,0.000838351,-2.137731704,0.033320446,neg,ns,1.477289201,0.0000511,0.0000288,1.77345311,0.077135384,pos,ns,0.959654848,Tcf4,Tcf4_Intron,18,69454315,69454364,69454315,69454316,50,+,CGCTCTTTGCTGATGAAATATTTTGAACTCTAAATTCATCTGGCACTGAC,"Intron (Tcf4-259/Tcf4, intron 3 of 6)",18,69343356,69564082,220727,1,Tcf4-259,110959,Tcf4-259;Tcf4-201;Tcf4-207;Tcf4-210;Tcf4-240;Tcf4-254;Tcf4-246;Tcf4-206;Tcf4-202;Tcf4-257;Tcf4-232;Tcf4-215;Tcf4-248;Tcf4-231;Tcf4-205;Tcf4-253;Tcf4-233;Tcf4-238;Tcf4-245;Tcf4-249;Tcf4-219;Tcf4-235;Tcf4-227;Tcf4-250,Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,42,66,21413,ENSMUSG00000053477,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9825,cg01286580,-0.000160283,0.0000139,-11.53392722,7.55E-26,loss,yes,0.0000364,0.0000236,1.54213926,0.124059904,pos,ns,0.003763406,0.006916526,0.544117959,0.586751434,pos,ns,0.231545841,0.00013206,0.000237859,0.555202271,0.579156717,pos,ns,0.511991387,Trps1,Trps1_Intergenic_upstream,15,50997255,50997304,50997255,50997256,50,+,CGAGCTCCCTGTTTTCAGCTGAGTCACAGCAGCTGGCTGGCACCTCCAGG,Distal Intergenic,15,50846176,50890463,44288,2,Trps1-208,-106792,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,36,83925,ENSMUSG00000038679,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3376,cg18075267,-0.0000033,0.00000132,-2.49618325,0.013072946,loss,ns,0.00000346,0.00000224,1.542060498,0.124079039,pos,ns,0.002116276,0.00065764,3.217987175,0.001427545,pos,ns,2.845410239,-0.0000681,0.0000226,-3.011502452,0.002813477,neg,ns,0.04529799,Smap1,Smap1_Exon,1,23922097,23922146,23922145,23922146,50,+,ATGAGCTGGTGCTGCTCGTTCAGCTTCTGAGCCTTCTCCCGACAGGAGCG,Promoter (<=1kb),1,23845625,23922317,76693,2,Smap1-201,171,Smap1-201,Smap1,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,98366,ENSMUSG00000026155,conserved gene and region,1,23922113,23922554,442,*,442,72,0.7760181,1.092107069,0.162895928,1.74E-72,CpGisland,TRUE,U1,Pr-A
15349,cg09359879,-0.00000227,0.00000108,-2.09901774,0.036623871,loss,ns,0.00000283,0.00000184,1.542058294,0.124079575,pos,ns,0.000385927,0.000537994,0.717344006,0.473702027,pos,ns,0.324494757,0.00000563,0.0000185,0.304331877,0.761079251,pos,ns,0.037281017,Dcaf5,Dcaf5_Exon,12,80436289,80436338,80436337,80436338,50,+,CGTCTCCTCTGAAAGTCCTGAGTGAGCAGGGGGTCCCCATGCAAGCCCCG,Promoter (<=1kb),12,80335848,80436601,100754,2,Dcaf5-201,263,Dcaf5-201;Dcaf5-202,Dcaf5;Dcaf5,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,6,320808,ENSMUSG00000049106,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
18220,cg25947654,0.000000847,0.00000162,0.522266075,0.601858084,gain,ns,0.00000425,0.00000276,1.541958731,0.124103766,pos,ns,0.002563139,0.000807247,3.175161942,0.001648087,pos,ns,2.783019928,-0.0000809,0.0000278,-2.915823093,0.003806189,neg,ns,0.954536119,Ap3b1,Ap3b1_Intron,13,94511660,94511709,94511660,94511661,50,-,CGCTCAGTTCAGCTTTAATTATGACTCTGCAGACCTGAAGAAATATTGCA,"Intron (Ap3b1-201/Ap3b1, intron 22 of 26)",13,94358960,94566317,207358,1,Ap3b1-201,152700,Ap3b1-201;Ap3b1-205,Ap3b1;Ap3b1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,55,11774,ENSMUSG00000021686,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3345,cg23110932,0.0000284,0.00000758,3.748013743,0.000212571,gain,ns,-0.0000198,0.0000129,-1.541924712,0.124112033,neg,ns,-0.006201242,0.003771491,-1.644241719,0.101139964,neg,ns,0.995077205,0.000329804,0.000129701,2.542799002,0.011482814,pos,ns,0.83316865,Gm11890,Gm11890_Intergenic_upstream,4,23753979,23754028,23754027,23754028,50,-,TAGATTGTCCGCTTCCCCTCTGTGACAGCCGCTGGATGGATTGAGCAGCG,Distal Intergenic,4,23659928,23660344,417,2,Gm11890-201,-93684,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,15,32,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20616,cg21303615,-0.0000053,0.000004,-1.32543382,0.186003275,loss,ns,0.0000105,0.00000679,1.541708003,0.124164704,pos,ns,0.004858684,0.001990394,2.441066541,0.015203234,pos,ns,1.818064028,-0.000119554,0.0000684,-1.746602599,0.081696724,neg,ns,0.904966097,Rsbn1,Rsbn1_threeUTR,3,103954195,103954244,103954243,103954244,50,+,GAACAGATGATCCCTACAGCAGATATGCCAAAGTCACCCTTCAAAAGACG,3' UTR,3,103914120,103966613,52494,1,Rsbn1-201,40075,Rsbn1-201;Rsbn1-202;Rsbn1-203;Rsbn1-204,Rsbn1;Rsbn1;Rsbn1;Rsbn1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,16,229675,ENSMUSG00000044098,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23278,cg02171515,0.00000231,0.00000461,0.502137496,0.615927278,gain,ns,-0.0000121,0.00000783,-1.541405179,0.124238336,neg,ns,-0.000989065,0.002292695,-0.43139816,0.666478736,neg,ns,0.176213702,-0.0000167,0.0000788,-0.211700909,0.832479492,neg,ns,0.863241365,Eri3,Eri3_Intron,4,117645376,117645425,117645376,117645377,50,-,CGGCACCTGCTTCCCTGTGCATGGAAATTGCAGCAGCCCAGGGGAAGGGA,"Intron (Eri3-201/Eri3, intron 7 of 8)",4,117550365,117674297,123933,1,Eri3-201,95011,Eri3-201;Eri3-206;Eri3-203,Eri3;Eri3;Eri3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,82,97,140546,ENSMUSG00000033423,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26207,cg26223473,-0.00000301,0.00000214,-1.41056917,0.159374337,loss,ns,0.00000559,0.00000363,1.541145478,0.124301509,pos,ns,0.000137764,0.001063405,0.12954954,0.897006844,pos,ns,0.047204243,-0.0000194,0.0000366,-0.531109911,0.59572293,neg,ns,0.946514017,Sox5,Sox5_Intron,6,144426787,144426836,144426787,144426788,50,+,CGTCTGTTAGCACAGGAAAAGTGATGGCAGTTTGACTCCTATTCCTAATA,"Intron (Sox5-209/Sox5, intron 4 of 13)",6,143843739,144781977,938239,2,Sox5-209,355141,Sox5-209;Sox5-212,Sox5;Sox5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,71,20678,ENSMUSG00000041540,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18655,cg06892314,-0.00000192,0.00000278,-0.688339187,0.49175398,loss,ns,-0.00000728,0.00000473,-1.540992869,0.124338643,neg,ns,-0.000811712,0.001384781,-0.586166383,0.558190251,neg,ns,0.253217753,-0.0000307,0.0000476,-0.645007177,0.519399586,neg,ns,0.954133995,Skap1,Skap1_Intron,11,96594263,96594312,96594263,96594264,50,-,CGCAGTCATGCATAGATTTAATAAGCATCCGAAGGTAGGATCCATCTGTA,"Intron (Skap1-204/Skap1, intron 4 of 12)",11,96464593,96758941,294349,1,Skap1-204,129670,Skap1-204;Skap1-203;Skap1-209;Skap1-201;Skap1-206;Skap1-208,Skap1;Skap1;Skap1;Skap1;Skap1;Skap1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,40,46,78473,ENSMUSG00000057058,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12118,cg24977381,0.00000162,0.00000261,0.620275223,0.535532307,gain,ns,-0.00000685,0.00000444,-1.540938409,0.124351897,neg,ns,-0.004067616,0.001301486,-3.125362532,0.001943973,neg,ns,2.71130982,0.00010402,0.0000448,2.324062939,0.020768242,pos,ns,0.825084383,Hnrnph3,Hnrnph3_threeUTR,10,63018019,63018068,63018067,63018068,50,+,TTTGTTCATTAGATACACATACCACCATCATATCCATCACCTCCTCGTCG,3' UTR,10,63014664,63023894,9231,2,Hnrnph3-201,5826,Hnrnph3-201;Hnrnph3-202;Hnrnph3-204;Hnrnph3-205;Hnrnph3-206;Hnrnph3-203;Rufy2-202;Rufy2-205,Hnrnph3;Hnrnph3;Hnrnph3;Hnrnph3;Hnrnph3;Hnrnph3;Rufy2;Rufy2,0;0;0;-1851;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,7,432467,ENSMUSG00000020069,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9997,cg11012474,0.0000138,0.00000457,3.028117939,0.002667531,gain,ns,-0.000012,0.00000777,-1.540910652,0.124358653,neg,ns,-0.000784466,0.002276297,-0.344623578,0.730611057,neg,ns,0.13631376,0.0000667,0.0000783,0.851887107,0.394934369,pos,ns,0.832271915,Maml3,Maml3_Intron,3,51805768,51805817,51805768,51805769,50,-,CGTCTGTGAAATGACAGCCACTTATTCTCCAGTGAACCGTAAAATCTGTA,"Intron (Maml3-202/Maml3, intron 2 of 4)",3,51685907,52105076,419170,2,Maml3-202,299259,Maml3-202,Maml3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,32,433586,ENSMUSG00000061143,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10105,cg16314083,0.000182932,0.0000171,10.72130065,5.08E-23,gain,yes,-0.0000447,0.000029,-1.540897376,0.124361884,neg,ns,0.032075203,0.00849216,3.777036828,0.000190242,pos,ns,3.720694258,-0.001024558,0.000292045,-3.508222041,0.00051787,neg,ns,0.308690322,Gm28308,Gm28308_Intron,6,52177260,52177309,52177260,52177261,50,-,CGGATGTGGCATTTGAAGAAAGAAGGCGTGGGTCAATAATCAACCCGCAC,"Intron (Hoxaas3-203/Hoxaas3-203, intron 1 of 1)",6,52163359,52213339,49981,2,Gm28308-201,36030,Gm28308-201;Hoxa3-201;Hoxa3-202;Hoxa3-204,Gm28308;Hoxa3;Hoxa3;Hoxa3,0;0;0;7565,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,46,103,,NA,mapped to different genes,6,52177164,52177376,213,*,213,16,0.577464789,0.901110524,0.075117371,1.49E-10,CpGisland,TRUE,U3,Pr-B
4092,cg11860347,-0.00000411,0.00000278,-1.476759151,0.140755318,loss,ns,-0.00000728,0.00000472,-1.54035957,0.124492837,neg,ns,-0.0000817,0.001383809,-0.059037553,0.952960236,neg,ns,0.020925221,0.00000386,0.0000476,0.081170721,0.935358564,pos,ns,0.937228209,Smarca2,Smarca2_Exon,19,26759884,26759933,26759884,26759885,50,-,CGTGGAGAAGGTGCCCAGTAATTCTCAGTTGGAAATAGAAGGAAACAGGT,"Exon (Smarca2-209/Smarca2, exon 29 of 34)",19,26605050,26778275,173226,1,Smarca2-216,154834,Smarca2-216;Smarca2-201;Smarca2-209;Smarca2-202;Smarca2-239;Smarca2-215;Smarca2-223;Smarca2-214;Smarca2-229;Smarca2-225;Smarca2-240;Smarca2-242;Smarca2-227;Smarca2-204;Smarca2-221;Smarca2-246;Smarca2-244;Smarca2-203;Smarca2-237;Smarca2-220;Smarca2-238;Smarca2-210;Smarca2-213;Smarca2-228;Smarca2-218;Smarca2-241;Smarca2-233;Smarca2-230;Smarca2-205;Smarca2-234;Smarca2-231;Smarca2-207;Smarca2-226;Smarca2-217,Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,8,67155,ENSMUSG00000024921,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4097,cg19070229,-0.000051,0.00000955,-5.342064987,0.000000178,loss,yes,0.000025,0.0000162,1.540293018,0.124509049,pos,ns,-0.004237093,0.004754503,-0.891174702,0.373526603,neg,ns,0.427678462,0.000287183,0.000163507,1.75639365,0.080008592,pos,ns,0.633994096,Gm45647,Gm45647_Promoter,8,26770683,26770732,26770731,26770732,50,-,CCGTCACCAAAGAGCAAAGCATTATTTATGACTGTCTGTAATGCCGTTCG,Promoter (9-10kb),8,26780315,26780509,195,1,Gm45647-201,-9632,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,62,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24047,cg18902591,-0.00000345,0.00000142,-2.433389913,0.015523104,loss,ns,0.00000371,0.00000241,1.540220725,0.124526663,pos,ns,-0.000133309,0.000705732,-0.18889509,0.850298647,neg,ns,0.070428512,0.0000398,0.0000243,1.637988331,0.102438698,pos,ns,0.040155827,Bcar3,Bcar3_Exon,3,122292957,122293006,122292957,122292958,50,-,CGGGACTCGAACCCGGAACCTTTGAATGCCTTCAGCCTCTAGAAGTCCAA,Promoter (1-2kb),3,122294136,122427148,133013,1,Bcar3-202,-1179,Bcar3-202,Bcar3,-1130,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,8,29815,ENSMUSG00000028121,conserved gene and region,3,122292926,122294040,1115,*,1115,150,0.722869955,1.030721351,0.134529148,3.20E-135,CpGisland,TRUE,NA,NRS
12024,cg18428441,-0.0000025,0.0000014,-1.787410098,0.074848035,loss,ns,0.00000365,0.00000237,1.540010529,0.124577884,pos,ns,0.001524234,0.000694909,2.193430611,0.029018737,pos,ns,1.5373215,-0.0000453,0.0000239,-1.897248449,0.058724288,neg,ns,0.965005913,Ncor1,Ncor1_Exon,11,62398370,62398419,62398418,62398419,50,+,TCTATTCTGTCCACTTTTTTCTCCCATGCCTCCATGAGCTGATCATAACG,"Exon (Ncor1-204/Ncor1, exon 9 of 45)",11,62316426,62438515,122090,2,Ncor1-204,40096,Ncor1-204;Ncor1-201;Ncor1-205;Ncor1-206;Ncor1-208;Ncor1-212;Ncor1-217;Ncor1-207;Ncor1-203,Ncor1;Ncor1;Ncor1;Ncor1;Ncor1;Ncor1;Ncor1;Ncor1;Ncor1,0;0;0;0;0;0;-3178;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,10,20185,ENSMUSG00000018501,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22972,cg25180674,-0.00000116,0.00000269,-0.429559097,0.667814805,loss,ns,0.00000705,0.00000458,1.539944987,0.12459386,pos,ns,0.003245984,0.001340965,2.4206337,0.016067804,pos,ns,1.794043472,-0.000132777,0.0000461,-2.879221286,0.004263933,neg,ns,0.940571548,Cnot2,Cnot2_threeUTR,10,116507051,116507100,116507099,116507100,50,+,ATGGAGGCGTGTGAAGTGACATTGTTGGTACCCCTGTTGTTGGCGTGACG,3' UTR,10,116485161,116581511,96351,2,Cnot2-210,74411,Cnot2-210;Cnot2-204;Cnot2-212;Cnot2-203;Cnot2-202;Cnot2-213;Cnot2-209;Cnot2-214;Cnot2-215;Cnot2-205;Cnot2-207;Cnot2-211;Cnot2-217;Cnot2-216;Cnot2-206;Cnot2-201;Cnot2-208,Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,9,15,72068,ENSMUSG00000020166,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19169,cg16907409,0.0000391,0.0000289,1.352073733,0.177337307,gain,ns,-0.0000756,0.0000491,-1.539708675,0.124651471,neg,ns,0.045946357,0.014377371,3.195741318,0.001538446,pos,ns,2.812917803,-0.000939247,0.000494437,-1.899629898,0.058409643,neg,ns,0.868169078,Thra,Thra_Exon,11,98756130,98756179,98756130,98756131,50,+,CGAAAAAGAAAGAACGGCCAATGTTCCCTGAAAACCAGCATGTCAGGTGA,"Exon (Thra-207/Thra, exon 3 of 4)",11,98741811,98757695,15885,1,Thra-207,14319,Thra-205;Thra-209;Thra-204;Thra-207;Thra-201;Thra-202;Thra-208;Thra-206;Thra-203,Thra;Thra;Thra;Thra;Thra;Thra;Thra;Thra;Thra,15492;0;15226;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,13,18,21833,ENSMUSG00000058756,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
21292,cg21056360,-0.0000139,0.00000621,-2.241279813,0.025715463,loss,ns,0.0000162,0.0000106,1.539291482,0.124753231,pos,ns,0.007981683,0.003092611,2.58088778,0.010314098,pos,ns,1.986568749,-0.000267561,0.000106355,-2.515745033,0.012383256,neg,ns,0.871463219,Gm5187,Gm5187_Intergenic_downstream,12,107128877,107128926,107128925,107128926,50,-,AAATTTTGATGGTGCCCTGCTTCTAATATACATTGCAGTAATTAGATTCG,Distal Intergenic,12,107205076,107206066,991,2,Gm5187-201,77189,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,10,382635,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4593,cg06170069,0.00000386,0.0000053,0.727778552,0.467298475,gain,ns,0.0000139,0.000009,1.539269309,0.124758642,pos,ns,-0.00338704,0.002637851,-1.284014863,0.200095581,neg,ns,0.698762503,-0.0000259,0.0000907,-0.285872705,0.77516655,neg,ns,0.754275907,Hes1,Hes1_Intergenic_upstream,16,29893862,29893911,29893862,29893863,50,+,CGTAGGGAGGAAGCAGGATGTATAAAGCCCAGGAGCCCGATCTGTTTCTG,Distal Intergenic,16,30064384,30065580,1197,1,Hes1-202,-170473,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,20,15205,ENSMUSG00000022528,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23432,cg15368026,0.0000106,0.00000276,3.856437858,0.000139932,gain,ns,-0.00000722,0.00000469,-1.53925304,0.124762611,neg,ns,-0.001499769,0.001373556,-1.091887791,0.275730286,neg,ns,0.559515529,0.0000475,0.0000472,1.006374495,0.315020332,pos,ns,0.055646934,Dpyd,Dpyd_Intron,3,118431446,118431495,118431494,118431495,50,+,GCGGCAGTGGTCTCGTAGGAAATGGTGTTCTCGTAAGTCAGGCTGCCCCG,"Intron (Gm26871-202/Gm26871-202, intron 1 of 2)",3,118562129,119432924,870796,1,Dpyd-201,-130634,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,14,29,99586,ENSMUSG00000033308,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18292,cg16124535,0.00000806,0.00000117,6.862390797,3.69E-11,gain,yes,-0.00000307,0.00000199,-1.538542065,0.12493619,neg,ns,0.000696939,0.000584219,1.192942027,0.233804319,pos,ns,0.631147471,-0.0000494,0.0000201,-2.45876321,0.014487971,neg,ns,0.968790022,Dyrk1a,Dyrk1a_threeUTR,16,94694823,94694872,94694823,94694824,50,-,CGGTCTTATGTATGATAAACAGTTGAATAATTTGTCCTCAGACTCTTTAC,3' UTR,16,94570010,94695067,125058,1,Dyrk1a-202,124813,Dyrk1a-202;Dyrk1a-203;Dyrk1a-201,Dyrk1a;Dyrk1a;Dyrk1a,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,14,13548,ENSMUSG00000022897,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4114,cg21160194,0.00000261,0.00000471,0.552770098,0.580819209,gain,ns,0.0000123,0.00000801,1.538496594,0.124947298,pos,ns,0.004409022,0.002345631,1.879673629,0.061090332,pos,ns,1.214027518,-0.000177995,0.0000807,-2.206561923,0.028077548,neg,ns,0.915496667,Gm12072,Gm12072_Intergenic_upstream,11,26815350,26815399,26815350,26815351,50,-,CGAGCCATTAGAGCACTCTGCAGGTTATTACAACTATCAAACATCAAGGT,Distal Intergenic,11,26832804,26845457,12654,1,Gm12072-201,-17454,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,7,666270,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8108,cg26083507,-0.0000105,0.00000553,-1.894261096,0.059120987,loss,ns,-0.0000144,0.00000939,-1.538412043,0.124967954,neg,ns,-0.0114704,0.002751299,-4.169085161,0.0000397,neg,ns,4.400905434,0.000291806,0.0000946,3.084077746,0.002225631,pos,ns,0.830351124,Ebf1,Ebf1_Intron,11,44750604,44750653,44750652,44750653,50,-,CACTTTGTAAGTTCACAGTTTAATTTGCCGGCAGTGGCAGTGTTAGGCCG,"Intron (Ebf1-203/Ebf1, intron 6 of 15)",11,44617317,45004995,387679,1,Ebf1-203,133287,Ebf1-203;Ebf1-202;Ebf1-201,Ebf1;Ebf1;Ebf1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,80,13591,ENSMUSG00000057098,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27448,cg04431616,-0.00000202,0.00000207,-0.973288865,0.331168586,loss,ns,-0.00000542,0.00000352,-1.538411828,0.124968007,neg,ns,-0.000180597,0.001032304,-0.174945241,0.861236867,neg,ns,0.064877388,-0.0000108,0.0000355,-0.304647124,0.760839343,neg,ns,0.963456347,Pbx1,Pbx1_Intron,1,168245870,168245919,168245918,168245919,50,-,GAGCCAGGGAGTTACATGGCGCCCTGGGGGTAATAATATTTTCCAGAACG,"Intron (Pbx1-208/Pbx1, intron 2 of 7)",1,168119364,168432270,312907,2,Pbx1-208,186351,Pbx1-208;Pbx1-205;Pbx1-206;Pbx1-201;Pbx1-202;Pbx1-204,Pbx1;Pbx1;Pbx1;Pbx1;Pbx1;Pbx1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,84,18514,ENSMUSG00000052534,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4083,cg18086725,-0.0000365,0.00000937,-3.898598776,0.000118626,loss,ns,0.0000245,0.0000159,1.538312651,0.12499224,pos,ns,-0.00897221,0.004663417,-1.923956043,0.055275452,neg,ns,1.257467698,0.000229446,0.000160375,1.43068885,0.153526625,pos,ns,0.814707418,Gm45647,Gm45647_Intron,8,26748019,26748068,26748019,26748020,50,+,CGTGTTTTGCAGAGTGCTGACACTGGTATGATTCAGTAATTATTGTTTCT,"Intron (Gm45646-201/Gm45646-201, intron 2 of 2)",8,26780315,26780509,195,1,Gm45647-201,-32247,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,62,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22965,cg18809289,0.0000806,0.00000767,10.50652703,2.74E-22,gain,yes,-0.00002,0.000013,-1.538201692,0.125019356,neg,ns,0.008450685,0.003816028,2.214524038,0.027519833,pos,ns,1.560354207,-0.000139747,0.000131233,-1.064876178,0.287760678,neg,ns,0.132416013,Alox5,Alox5_Exon,6,116460887,116460936,116460935,116460936,50,-,GAAGTCGTTGTAGAAGGGCTTGTCCAGCAGGTGCTTCTCGCTGCAGCCCG,Promoter (<=1kb),6,116410077,116461178,51102,2,Alox5-201,242,Alox5-201;Alox5-204;Alox5-208;Alox5-202;Alox5-207,Alox5;Alox5;Alox5;Alox5;Alox5,0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,11689,ENSMUSG00000025701,conserved gene and region,6,116460821,116461250,430,*,430,34,0.667441861,0.716315532,0.079069767,1.40E-22,CpGisland,TRUE,NA,NRS
24842,cg08874396,-0.0000049,0.0000026,-1.882909169,0.060648877,loss,ns,0.00000679,0.00000442,1.538023556,0.125062899,pos,ns,-0.001731302,0.001294157,-1.337783302,0.18194765,neg,ns,0.740053549,0.0000293,0.0000445,0.657798336,0.511155872,pos,ns,0.948091995,Gm4410,Gm4410_Intron,3,128850383,128850432,128850431,128850432,50,+,GACATTTCAATTGTACGAGCAATTTGCATTCTATCTGACATTAAATAACG,"Intron (Gm43824-201/Gm43824-201, intron 4 of 4)",3,128839836,128840521,686,1,Gm4410-201,10547,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,13,100043393,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18334,cg21724411,-0.00000488,0.00000234,-2.090667084,0.03737208,loss,ns,0.0000061,0.00000397,1.537974476,0.125074898,pos,ns,0.001306985,0.001162649,1.124143681,0.261821793,pos,ns,0.581994207,-0.0000191,0.00004,-0.477160281,0.633584205,neg,ns,0.940723554,Tbca,Tbca_Intron,13,94817236,94817285,94817284,94817285,50,+,TGAAAAATGAATTCTTTGTTGTCGTGCCGACAACCCAGCAACTGCAGTCG,"Intron (Tbca-201/Tbca, intron 1 of 3)",13,94788910,94842922,54013,1,Tbca-201,28326,Tbca-201;Tbca-203;Tbca-204,Tbca;Tbca;Tbca,0;0;-449,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,9,21371,ENSMUSG00000042043,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9241,cg12633563,-0.000003,0.00000335,-0.896891409,0.370472841,loss,ns,0.00000874,0.00000568,1.537354695,0.125226499,pos,ns,0.00413124,0.001665313,2.480758268,0.01364064,pos,ns,1.86516525,-0.00013835,0.0000573,-2.415758563,0.016280394,neg,ns,0.929106061,Gm13471,Gm13471_Intergenic_upstream,2,47834367,47834416,47834415,47834416,50,-,AACCTTATTATGTTGTTTATTCAAACAGGAATTAAGTCTTCTTTCATGCG,Distal Intergenic,2,48140146,48140578,433,1,Gm13471-201,-305779,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,9,10,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6383,cg16028961,-0.00000179,0.00000379,-0.472259,0.637074203,loss,ns,0.0000099,0.00000644,1.537260297,0.125249601,pos,ns,-0.000834776,0.001886399,-0.442523629,0.658418933,neg,ns,0.181497689,-0.0000481,0.0000649,-0.741429224,0.458994528,neg,ns,0.929823256,Tenm2,Tenm2_Intron,11,37071292,37071341,37071292,37071293,50,-,CGATGGCAGATTGTGATCATCTTCATGTTATAGGAATCTAGAGATAAGTG,"Intron (Tenm2-202/Tenm2, intron 2 of 30)",11,36006656,37235882,1229227,2,Tenm2-202,164541,Tenm2-202;Tenm2-207,Tenm2;Tenm2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,47,84,23964,ENSMUSG00000049336,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22545,cg18096355,-0.0000749,0.0000154,-4.859560317,1.90E-06,loss,ns,0.0000402,0.0000262,1.536843154,0.125351732,pos,ns,0.014669284,0.007671899,1.912079922,0.056787524,pos,ns,1.245747067,-0.000732233,0.000263836,-2.775333788,0.005849448,neg,ns,0.445841186,Gm13973,Gm13973_Intron,2,115056783,115056832,115056831,115056832,50,-,GTGCAAGGGCTTGTCCTAAGTGATTACTCAGAATTACAAATCATTTCACG,"Intron (Gm28494-201/Gm28494-201, intron 2 of 3)",2,115036419,115037312,894,2,Gm13973-201,-19520,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,13,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3818,cg20558605,0.00000629,0.0000102,0.618051631,0.536995096,gain,ns,0.0000266,0.0000173,1.536842068,0.125351998,pos,ns,0.001725982,0.005064918,0.340771966,0.733506083,pos,ns,0.13459628,-0.00009,0.000174182,-0.516945842,0.605562578,neg,ns,0.269393891,Adgrb3,Adgrb3_Exon,1,25504476,25504525,25504524,25504525,50,-,AAGCTCGGCTGTTCCCAGAAGGCCACTCCATGAAGACTGAGAGAGCAGCG,"Exon (Adgrb3-206/Adgrb3, exon 8 of 29)",1,25067550,25826139,758590,2,Adgrb3-206,321614,Adgrb3-206;Adgrb3-205;Adgrb3-207;Adgrb3-201;Adgrb3-210,Adgrb3;Adgrb3;Adgrb3;Adgrb3;Adgrb3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,14,25,210933,ENSMUSG00000033569,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3421,cg06447962,0.0000183,0.0000051,3.594075906,0.000378555,gain,ns,-0.0000133,0.00000866,-1.536809111,0.125360069,neg,ns,-0.005424612,0.002535943,-2.139091089,0.033209264,neg,ns,1.478740752,0.000121005,0.0000872,1.387496827,0.166286904,pos,ns,0.085832256,A830031A19Rik,A830031A19Rik_Promoter,11,24074246,24074295,24074246,24074247,50,-,CGTGAATATATGTGCATTATTTCAGAAAGTCTGTTAGAAAACTTGTCAAC,Promoter (<=1kb),11,24048955,24075054,26100,2,A830031A19Rik-201,759,A830031A19Rik-201;Bcl11a-201;Bcl11a-203;Bcl11a-205;Bcl11a-202,A830031A19Rik;Bcl11a;Bcl11a;Bcl11a;Bcl11a,0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,9,23,268391,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
27090,cg25569421,0.0000648,0.0000148,4.392605286,0.0000154,gain,ns,-0.0000385,0.0000251,-1.536458363,0.125445999,neg,ns,0.03597507,0.007346335,4.897009336,0.00000157,pos,ns,5.804348462,-0.001122563,0.00025264,-4.443333824,0.0000123,neg,ns,0.439451929,Srsf11,Srsf11_threeUTR,3,158023202,158023251,158023250,158023251,50,-,TACACACTACTTTTTTGTTAACACTGCCAAGATTTCATCACCTGTACTCG,3' UTR,3,158010473,158036639,26167,2,Srsf11-204,13388,Srsf11-204;Srsf11-213;Srsf11-202;Srsf11-207;Srsf11-201;Srsf11-217;Srsf11-218;Srsf11-206;Srsf11-209;Srsf11-210;Srsf11-212;Srsf11-203;Srsf11-208;Srsf11-215,Srsf11;Srsf11;Srsf11;Srsf11;Srsf11;Srsf11;Srsf11;Srsf11;Srsf11;Srsf11;Srsf11;Srsf11;Srsf11;Srsf11,0;0;0;-62;0;-1198;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,8,69207,ENSMUSG00000055436,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6510,cg16748506,0.0000292,0.00000878,3.329624423,0.000974574,gain,ns,0.0000229,0.0000149,1.536430942,0.125452719,pos,ns,0.00931497,0.004368714,2.132199386,0.033776232,pos,ns,1.471388803,-0.000303014,0.00015024,-2.016869643,0.044570952,neg,ns,0.568697026,Zfp536,Zfp536_Exon,7,37568195,37568244,37568195,37568196,50,+,CGAGCTTACTTGGCAGGTCTCTCTGGCTGCCCACTTTAGTGCTGTGAACC,Promoter (<=1kb),7,37318024,37568390,250367,2,Zfp536-211,146,Zfp536-211;Zfp536-202;Zfp536-201;Zfp536-203;Zfp536-206;Zfp536-209;Zfp536-208,Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,13,112,243937,ENSMUSG00000043456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7842,cg23844361,-0.0000306,0.000012,-2.556265712,0.01105675,loss,ns,0.0000313,0.0000203,1.536243132,0.125498751,pos,ns,0.012097434,0.005961207,2.029359674,0.043275719,pos,ns,1.363755707,-0.000362164,0.000205005,-1.766606694,0.078278164,neg,ns,0.454725374,Gm12455,Gm12455_Intergenic_downstream,4,44508715,44508764,44508715,44508716,50,-,CGTCGGGAAGTTCACATATTTGGGCATTAGTGCAGCTATTAGTTTAACAA,Distal Intergenic,4,44382922,44383337,416,1,Gm12455-201,125842,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,15,15,,NA,mapped to different genes,4,44508566,44508719,154,*,154,13,0.662337662,0.784482759,0.084415584,2.76E-09,CpGisland,TRUE,U15,NS
4682,cg14426987,-0.0000202,0.00000524,-3.842559198,0.000147704,loss,ns,0.0000137,0.00000891,1.536148551,0.125521938,pos,ns,-0.000198224,0.002610089,-0.075945359,0.939511558,neg,ns,0.027097873,0.00000619,0.0000898,0.068976988,0.945052408,pos,ns,0.890638416,Mecom,Mecom_Intron,3,30106630,30106679,30106630,30106631,50,-,CGATCCTCCGACTGCTCGGCGCCAACCACAACATGCTACCCACCGTGAGA,"Intron (Mecom-212/Mecom, intron 1 of 15)",3,29951299,30509733,558435,2,Mecom-212,403054,Mecom-212;Mecom-203;Mecom-210;Mecom-213;Mecom-207;Mecom-208;Mecom-211,Mecom;Mecom;Mecom;Mecom;Mecom;Mecom;Mecom,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,80,14013,ENSMUSG00000027684,conserved gene and region,3,30106598,30106734,137,*,137,14,0.613138686,1.097254005,0.102189781,3.95E-11,CpGisland,TRUE,U9,En-Pp
11308,cg22358587,-0.000021,0.00000901,-2.332078577,0.020336703,loss,ns,-0.0000235,0.0000153,-1.535604627,0.125655348,neg,ns,-0.009404477,0.004486548,-2.096150055,0.036879353,neg,ns,1.433216704,0.0000313,0.000154292,0.202858197,0.839378947,pos,ns,0.824953435,Gm13531,Gm13531_Intergenic_upstream,2,57523142,57523191,57523190,57523191,50,-,ATCAGGCTCACTTTTTACTTGGGGAATAGAGCTGACAAAATCACATCACG,Distal Intergenic,2,57425167,57425709,543,2,Gm13531-201,-97482,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,10,271788,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17264,cg14867257,-0.0000251,0.00000884,-2.844333178,0.004746388,loss,ns,-0.000023,0.000015,-1.5354103,0.125703038,neg,ns,-0.012762975,0.004397794,-2.902131217,0.003971891,neg,ns,2.401002635,0.00000152,0.00015124,0.010062615,0.991977803,pos,ns,0.845872938,Nog,Nog_Intergenic_upstream,11,89340032,89340081,89340032,89340033,50,-,CGCCCTGTAGCCTCAGCTGGCACAGAAATTCCAAAATAAATGAACGTGTT,Distal Intergenic,11,89300638,89302332,1695,2,Nog-201,-37749,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,36,18121,ENSMUSG00000048616,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27578,cg01718371,-0.0000419,0.00000618,-6.774980836,6.26E-11,loss,yes,0.0000161,0.0000105,1.535338299,0.125720712,pos,ns,0.00501642,0.003076117,1.630763455,0.103955759,pos,ns,0.983151445,-0.000222375,0.000105787,-2.102096391,0.036351281,neg,ns,0.904407925,Tshz2,Tshz2_Intron,2,170028874,170028923,170028874,170028875,50,+,CGCCTGCCTTGTCATTGCAGATAGGTCAGGAATGTTTTAATTTTAGGGAT,"Intron (Tshz2-203/Tshz2, intron 1 of 1)",2,169884893,170071816,186924,1,Tshz2-203,143981,Tshz2-203;Tshz2-205,Tshz2;Tshz2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,21,30,228911,ENSMUSG00000047907,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22381,cg06342113,0.00000176,0.00000178,0.988636275,0.323612145,gain,ns,0.00000465,0.00000303,1.535320262,0.125725139,pos,ns,0.001394532,0.000886526,1.573029951,0.116731901,pos,ns,0.93281044,0.0000168,0.0000305,0.55084386,0.582137465,pos,ns,0.933650173,Clasp2,Clasp2_Exon,9,113875254,113875303,113875302,113875303,50,+,TGTTATTCCAGCCTCCAGACACCATTCCAGATCAACTGGTGCCCTCTACG,"Exon (Clasp2-202/Clasp2, exon 18 of 34)",9,113741473,113918797,177325,1,Clasp2-204,133781,Clasp2-204;Clasp2-201;Clasp2-203;Clasp2-207;Clasp2-209;Clasp2-202,Clasp2;Clasp2;Clasp2;Clasp2;Clasp2;Clasp2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,3,76499,ENSMUSG00000033392,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1563,cg05810333,0.0000204,0.00000643,3.172812477,0.001661053,gain,ns,-0.0000168,0.0000109,-1.535319307,0.125725374,neg,ns,0.005537074,0.003202008,1.729250305,0.084759799,pos,ns,1.07181008,-0.000338333,0.000110117,-3.072491471,0.002311174,neg,ns,0.626375348,Zfp521,Zfp521_Intron,18,13738943,13738992,13738991,13738992,50,+,TTCATCTGGCTCTACCCTATCATCCCCAAGGTGATTGAGTTCACTTCCCG,"Intron (Zfp521-201/Zfp521, intron 5 of 7)",18,13687013,13972787,285775,2,Zfp521-201,233795,Zfp521-201;Zfp521-205;Zfp521-204,Zfp521;Zfp521;Zfp521,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,81,225207,ENSMUSG00000024420,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7469,cg17760546,0.0000278,0.00000427,6.509690753,3.03E-10,gain,yes,0.0000111,0.00000725,1.535193276,0.125756315,pos,ns,0.008328394,0.002124527,3.920117352,0.000108974,pos,ns,3.96267513,-0.000114272,0.0000731,-1.564037436,0.118828998,neg,ns,0.072675757,Pou3f3,Pou3f3_Intron,1,42704648,42704697,42704696,42704697,50,-,GACTTTGGATCACTGCAACTTCTGTAAAAGCCGTAGGAGAATACAAACCG,"Intron (Gm20646-202/Gm20646-202, intron 1 of 1)",1,42695768,42703176,7409,1,Pou3f3-201,8929,Pou3f3-202;Pou3f3-201,Pou3f3;Pou3f3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,37,18993,ENSMUSG00000045515,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
5688,cg04240809,0.00000164,0.0000023,0.712578755,0.476642451,gain,ns,-0.00000599,0.0000039,-1.534893426,0.125829954,neg,ns,-0.001689838,0.001142399,-1.479201722,0.140101836,neg,ns,0.853556172,0.0000782,0.0000393,1.991080093,0.047349575,pos,ns,0.948284367,Sox2,Sox2_Intron,3,34560181,34560230,34560181,34560182,50,+,CGCTATGTGAAAAATGTTGAATATCAACAATGGGTTTCAGTGCTGTATTG,"Intron (Sox2ot-204/Sox2ot-204, intron 3 of 3)",3,34650405,34652461,2057,1,Sox2-201,-90175,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,34,62,20674,ENSMUSG00000074637,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9803,cg17551240,-0.00000192,0.00000113,-1.697962156,0.090518393,loss,ns,0.00000294,0.00000192,1.534753878,0.125864237,pos,ns,0.000966044,0.000562162,1.718444331,0.086714021,pos,ns,1.061910672,-0.0000311,0.0000193,-1.609109491,0.108610252,neg,ns,0.969816896,Tbc1d5,Tbc1d5_Intron,17,50898064,50898113,50898112,50898113,50,+,CACGATTTAGCCATTAGCATCTACTTATGTTTGTCAGAACAGTGCATCCG,"Intron (Tbc1d5-201/Tbc1d5, intron 13 of 21)",17,50733124,51179168,446045,2,Tbc1d5-201,281055,Tbc1d5-201;Tbc1d5-207;Tbc1d5-205;Tbc1d5-208;Tbc1d5-203,Tbc1d5;Tbc1d5;Tbc1d5;Tbc1d5;Tbc1d5,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,14,72238,ENSMUSG00000023923,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7367,cg15939534,-0.00000412,0.00000134,-3.071096558,0.002321675,loss,ns,0.0000035,0.00000228,1.534642948,0.125891494,pos,ns,0.000991439,0.000668352,1.48340889,0.138981759,pos,ns,0.857042197,-0.0000557,0.000023,-2.422219285,0.015999192,neg,ns,0.965382976,Tecta,Tecta_fiveUTR,9,42398231,42398280,42398231,42398232,50,-,CGAAGATGAAAGAGACCCAAATTCTAAGGAATGATGAATAATTCATCCTG,5' UTR,9,42329622,42399929,70308,2,Tecta-201,1649,Tecta-201;Tecta-203,Tecta;Tecta,0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,2,21683,ENSMUSG00000037705,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11255,cg20403853,-0.000041,0.0000101,-4.047455864,0.0000654,loss,ns,0.0000264,0.0000172,1.534474609,0.125932866,pos,ns,-0.000443542,0.005043287,-0.087946929,0.929975641,neg,ns,0.031528427,-0.000169404,0.000173438,-0.976741923,0.329458521,neg,ns,0.790847622,Gria1,Gria1_Exon,11,57185795,57185844,57185843,57185844,50,+,TGTTCCCAGTTCTCCAAAGGAGTCTATGCCATCTTTGGGTTTTATGAACG,"Exon (Gria1-201/Gria1, exon 3 of 16)",11,57011810,57330244,318435,1,Gria1-201,173985,Gria1-201;Gria1-202;Gria1-204;Gria1-205,Gria1;Gria1;Gria1;Gria1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,13,14799,ENSMUSG00000020524,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2306,cg18659343,-0.00000115,0.00000184,-0.622389204,0.534143499,loss,ns,-0.0000048,0.00000313,-1.534385507,0.125954769,neg,ns,0.0000308,0.000915689,0.03360962,0.973210081,pos,ns,0.011793401,-0.0000138,0.0000315,-0.436940053,0.662459023,neg,ns,0.084011459,Irf2bp1,Irf2bp1_Exon,7,19004461,19004510,19004461,19004462,50,+,CGCCAGTGGTGCTACCTGTGCGACCTGCCCAAGATGCCGTGGGCCATGGT,Promoter (<=1kb),7,19004044,19006777,2734,1,Irf2bp1-201,417,Irf2bp1-201;Mypop-201;Mypop-203,Irf2bp1;Mypop;Mypop,0;13216;13142,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,4,272359,ENSMUSG00000044030,conserved gene and region,7,19004289,19004888,600,*,600,71,0.735,0.877192983,0.118333333,9.63E-60,CpGisland,TRUE,U1,Pr-A
6794,cg25266356,-0.0000115,0.0000179,-0.644095743,0.519989612,loss,ns,0.0000467,0.0000304,1.534368386,0.125958978,pos,ns,0.014706059,0.008909519,1.650600742,0.099832841,pos,ns,1.000726572,-0.000349655,0.000306398,-1.141181038,0.254675378,neg,ns,0.242238684,Gm48198,Gm48198_Intergenic_upstream,10,38553827,38553876,38553875,38553876,50,-,TTAACAGCTTTAATGACCACAGCAATTGATGGTTAAATCAATTTGTGCCG,Distal Intergenic,10,38433979,38434135,157,2,Gm48198-201,-119741,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,3,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8993,cg22206368,-0.00000316,0.00000161,-1.962026972,0.050653765,loss,ns,0.0000042,0.00000274,1.534184787,0.12600412,pos,ns,0.001797127,0.000802451,2.239546957,0.02582913,pos,ns,1.587890219,-0.0000151,0.0000276,-0.548318488,0.583867874,neg,ns,0.046891043,Trim8,Trim8_Exon,19,46502594,46502643,46502594,46502595,50,+,CGCTGCCCAGAGTGCAACCAGGCCTACAACCAGAAGCCGGGCCTGGAGAA,Promoter (<=1kb),19,46501702,46516848,15147,1,Trim8-201,892,Trim8-201,Trim8,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,15,21,93679,ENSMUSG00000025034,conserved gene and region,19,46502503,46503142,640,*,640,53,0.6359375,0.821705426,0.0828125,6.38E-36,CpGisland,TRUE,U1,Pr-A
26576,cg17267107,0.00000186,0.00000747,0.249031656,0.803501207,gain,ns,-0.0000195,0.0000127,-1.534113528,0.126021644,neg,ns,-0.008136953,0.003715467,-2.19002142,0.029267508,neg,ns,1.533614258,0.000206556,0.000127775,1.616563111,0.106989754,pos,ns,0.804898555,Casz1,Casz1_Intron,4,148924608,148924657,148924608,148924609,50,-,CGTTTCCACTGAGTGAAATGTTTAGAAGGGACGCGCAGGGAGAACTTTAT,"Intron (Casz1-201/Casz1, intron 4 of 15)",4,148804429,148945129,140701,1,Casz1-201,120179,Casz1-201;Casz1-202;Casz1-206,Casz1;Casz1;Casz1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,94,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21920,cg20003457,-0.0000111,0.00000713,-1.55031449,0.122086321,loss,ns,0.0000186,0.0000121,1.53394579,0.126062902,pos,ns,0.008812154,0.003548675,2.483223394,0.013548471,pos,ns,1.868109726,-0.000334194,0.000122039,-2.738427513,0.006530359,neg,ns,0.857987505,Nav3,Nav3_Intron,10,109723866,109723915,109723866,109723867,50,-,CGACATGAAGATTTAGAACATAAGCTGCTTTATTATAGCTCTAAGATAAG,"Intron (Nav3-201/Nav3, intron 24 of 38)",10,109681259,110000219,318961,2,Nav3-201,276304,Nav3-201;Nav3-208;Nav3-204;Nav3-207;Nav3-203,Nav3;Nav3;Nav3;Nav3;Nav3,0;0;0;0;-65,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,4,260315,ENSMUSG00000020181,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20617,cg08988723,-0.00000709,0.00000219,-3.230749652,0.001367312,loss,ns,0.00000571,0.00000373,1.533832177,0.126090853,pos,ns,0.00302835,0.001091521,2.774432404,0.005865281,pos,ns,2.231711156,-0.000128622,0.0000375,-3.426519433,0.000693854,neg,ns,0.931113007,Rsbn1,Rsbn1_threeUTR,3,103954198,103954247,103954246,103954247,50,-,CAGATGATCCCTACAGCAGATATGCCAAAGTCACCCTTCAAAAGACGACG,3' UTR,3,103914120,103966613,52494,1,Rsbn1-201,40078,Rsbn1-201;Rsbn1-202;Rsbn1-203;Rsbn1-204,Rsbn1;Rsbn1;Rsbn1;Rsbn1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,16,229675,ENSMUSG00000044098,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
924,cg03669298,-0.0000709,0.00000956,-7.419631039,1.14E-12,loss,yes,0.0000249,0.0000162,1.533518985,0.12616793,pos,ns,-0.008715157,0.004755811,-1.832527939,0.067831877,neg,ns,1.168566164,0.000382527,0.000163552,2.33887279,0.019977097,pos,ns,0.666715017,Gata3,Gata3_Intron,2,9872927,9872976,9872975,9872976,50,-,ATGTACTGAACATGCAGGTCTGGGTTCTTCTGTCAGCCTAACCGCATCCG,"Intron (Gata3-201/Gata3, intron 3 of 5)",2,9857078,9878600,21523,2,Gata3-201,5624,Gata3-201;Gata3-205;Gata3-206;Gata3-202;Gata3-204;Gata3-203,Gata3;Gata3;Gata3;Gata3;Gata3;Gata3,0;0;2423;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,21,14462,ENSMUSG00000015619,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16787,cg23787052,0.000000279,0.00000535,0.052100587,0.958482101,gain,ns,0.0000139,0.00000909,1.533425128,0.126191035,pos,ns,0.005108134,0.002662265,1.91871718,0.055938258,pos,ns,1.252291063,-0.000200014,0.0000916,-2.184628391,0.029664806,neg,ns,0.916190061,Lrba,Lrba_Intron,3,86530144,86530193,86530192,86530193,50,-,AAATAGGCTTTGTAGGAGATCTCAGTCTAGGGAACTAATTACTTGTGCCG,"Intron (Lrba-202/Lrba, intron 37 of 50)",3,86224680,86746712,522033,1,Lrba-202,305464,Lrba-202;Lrba-204;Lrba-201;Lrba-208,Lrba;Lrba;Lrba;Lrba,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,45,80877,ENSMUSG00000028080,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10454,cg22921137,0.00000644,0.00000762,0.845735942,0.398352384,gain,ns,-0.0000198,0.0000129,-1.533097528,0.126271708,neg,ns,0.003294485,0.003791632,0.868882978,0.385583333,pos,ns,0.413881746,-0.000190507,0.000130394,-1.461011887,0.145024992,neg,ns,0.849768871,Npas3,Npas3_Intron,12,53605971,53606020,53605971,53605972,50,+,CGAAAAGCTTCACATGATATTACTGCAGATTTAAAATGACAGTCGGGGAC,"Intron (Npas3-204/Npas3, intron 2 of 10)",12,53248157,54069532,821376,1,Npas3-204,357814,Npas3-204;Npas3-201;Npas3-203,Npas3;Npas3;Npas3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,83,103,27386,ENSMUSG00000021010,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26457,cg03888920,0.000000892,0.00000143,0.625169412,0.53231979,gain,ns,0.00000371,0.00000242,1.533064126,0.126279936,pos,ns,0.000693784,0.00070993,0.97725663,0.329204116,pos,ns,0.482534744,-0.00000415,0.0000244,-0.170072856,0.865063777,neg,ns,0.029379905,Mtus2,Mtus2_Exon,5,148265414,148265463,148265462,148265463,50,-,GCCATTGCTGCTGCAAGCCTTATAACTGCCTTCAGTGCCTGGACAAGACG,"Exon (Mtus2-205/Mtus2, exon 1 of 9)",5,147957320,148316065,358746,1,Mtus2-203,308094,Mtus2-203;Mtus2-205;Mtus2-201;Mtus2-208;Mtus2-204,Mtus2;Mtus2;Mtus2;Mtus2;Mtus2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,77521,ENSMUSG00000029651,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
8537,cg01313856,-0.00000349,0.00000216,-1.615587659,0.107200726,loss,ns,0.00000562,0.00000367,1.532866298,0.126328674,pos,ns,0.003086172,0.001073791,2.874089792,0.004331971,pos,ns,2.36331441,-0.0000789,0.0000369,-2.137839031,0.033311656,neg,ns,0.948648333,Btrc,Btrc_Intron,19,45312174,45312223,45312174,45312175,50,+,CGCTCGTACATAATTGACATCGGCAGATTCTTTCATTATACAAGATTTAG,"Intron (Gm28578-208/Gm28578-208, intron 3 of 6)",19,45363734,45507736,144003,1,Btrc-204,-51511,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,63,98,12234,ENSMUSG00000025217,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11388,cg11848424,-0.0000496,0.0000116,-4.262468337,0.0000269,loss,ns,-0.0000303,0.0000198,-1.532765483,0.126353517,neg,ns,-0.020380745,0.005793431,-3.517905673,0.000500038,neg,ns,3.300997055,0.0000686,0.000199236,0.344362218,0.730807384,pos,ns,0.680409791,Pcdh7,Pcdh7_threeUTR,5,57913172,57913221,57913172,57913173,50,-,CGTTTTCTGTTGTGAGTCAGCCTCAGGACCCACATCAGGGGTCACTGCAG,3' UTR,5,57717967,58133230,415264,1,Pcdh7-203,195205,Pcdh7-203;Pcdh7-202;Pcdh7-205;Pcdh7-206;Pcdh7-207;Pcdh7-204,Pcdh7;Pcdh7;Pcdh7;Pcdh7;Pcdh7;Pcdh7,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,13,54216,ENSMUSG00000029108,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23023,cg21474882,0.000231788,0.0000183,12.65379849,7.18E-30,gain,yes,-0.0000477,0.0000311,-1.53269143,0.126371768,neg,ns,0.022173035,0.009116903,2.432079651,0.015578291,pos,ns,1.807480195,-0.000696773,0.00031353,-2.222353302,0.026980812,neg,ns,0.15395394,Gpc6,Gpc6_Exon,14,116926046,116926095,116926046,116926047,50,-,CGGTGCCAAGGGATTCAGCCTGGCGGACATCCCCTACCAGGAGATCGCAG,Promoter (<=1kb),14,116925315,117627198,701884,1,Gpc6-203,731,Gpc6-203;Gpc6-202;Gpc6-204;Gpc6-201,Gpc6;Gpc6;Gpc6;Gpc6,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,5,23888,ENSMUSG00000058571,conserved gene and region,14,116925785,116926143,359,*,359,35,0.701949861,0.804417414,0.097493036,1.68E-26,CpGisland,TRUE,NA,NRS
26599,cg17718834,0.0000161,0.00000372,4.337384872,0.0000195,gain,ns,-0.00000969,0.00000632,-1.532561725,0.12640374,neg,ns,0.000218872,0.001852271,0.118164137,0.906014132,pos,ns,0.042865028,-0.0000653,0.0000637,-1.024631383,0.306336028,neg,ns,0.931273516,Pex14,Pex14_Intron,4,148967378,148967427,148967378,148967379,50,-,CGGCGGCTTCATTTGCAAATGTGAACAGATTCTCAGAGCAGATAAATGAA,"Intron (Gm17029-201/Gm17029-201, intron 2 of 2)",4,148960535,149099876,139342,2,Pex14-201,132449,Pex14-201;Pex14-202,Pex14;Pex14,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,41,48,56273,ENSMUSG00000028975,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8253,cg12715826,-0.00010652,0.0000176,-6.04163405,4.37E-09,loss,yes,0.0000459,0.00003,1.53244005,0.126433738,pos,ns,0.031465703,0.008775089,3.585798862,0.00039027,pos,ns,3.408635302,-0.000970203,0.000301775,-3.214992841,0.001442028,neg,ns,0.666748253,Ebf1,Ebf1_Intron,11,44904173,44904222,44904221,44904222,50,-,TGAAATGAAATTTAAACCAATTAATCTGTTAGATTTTTATCGCTTGTCCG,"Intron (Ebf1-203/Ebf1, intron 8 of 15)",11,44617317,45004995,387679,1,Ebf1-203,286856,Ebf1-203;Ebf1-202;Ebf1-201,Ebf1;Ebf1;Ebf1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,80,13591,ENSMUSG00000057098,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18013,cg12541229,0.0000195,0.00000641,3.043155386,0.002541474,gain,ns,0.0000167,0.0000109,1.532428602,0.12643656,pos,ns,-0.000594911,0.003191442,-0.186408063,0.852246695,neg,ns,0.069434674,0.000204799,0.000109753,1.865995628,0.062986201,pos,ns,0.133818109,Elk3,Elk3_Intron,10,93309785,93309834,93309833,93309834,50,+,GCGCATGGCAATTAGTCTTGCCGTTTCCAGACAAGCCAGAAACTCTCCCG,"Intron (Elk3-201/Elk3, intron 1 of 4)",10,93247414,93311135,63722,2,Elk3-201,1301,Elk3-201;Elk3-202;Elk3-204;Elk3-203,Elk3;Elk3;Elk3;Elk3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,7,13713,ENSMUSG00000008398,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12331,cg17214349,-0.00000369,0.00000141,-2.613848951,0.009389838,loss,ns,0.00000367,0.0000024,1.532170477,0.126500218,pos,ns,0.000618327,0.000702627,0.880021638,0.379529277,pos,ns,0.420754716,-0.0000277,0.0000242,-1.146500318,0.252472366,neg,ns,0.96776893,Fign,Fign_Intergenic_downstream,2,63963802,63963851,63963850,63963851,50,-,TCCCTCACACCAGCAGCTTCAGGCAATTTTCTTCACATTTAAATAGATCG,Distal Intergenic,2,63980447,64097988,117542,2,Fign-202,134186,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,28,84,60344,ENSMUSG00000075324,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1006,cg06772761,0.000000677,0.00000277,0.244113864,0.807304118,gain,ns,0.00000722,0.00000471,1.53209822,0.126518043,pos,ns,0.000682644,0.001380075,0.49464259,0.621202796,pos,ns,0.206766598,-0.0000887,0.0000475,-1.869313717,0.062521857,neg,ns,0.918112763,Fhit,Fhit_Intron,14,10577536,10577585,10577536,10577537,50,+,CGATAGCTGCTGTGCTATAATCTAAAATAAATTGCTTTTCTCAAGAAGCC,"Intron (Fhit-206/Fhit, intron 3 of 8)",14,9550100,11162032,1611933,2,Fhit-206,584447,Fhit-206;Fhit-201;Fhit-205;Fhit-203;Fhit-207;Fhit-202,Fhit;Fhit;Fhit;Fhit;Fhit;Fhit,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,6,14198,ENSMUSG00000060579,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12407,cg01248517,0.000011,0.00000402,2.725315948,0.006789002,gain,ns,-0.0000105,0.00000683,-1.531492685,0.126667493,neg,ns,0.004300752,0.002000131,2.150235257,0.03230977,pos,ns,1.490666136,-0.000308652,0.0000688,-4.487238102,0.0000102,neg,ns,0.080046834,Fign,Fign_Promoter,2,64099075,64099124,64099075,64099076,50,-,CGTTTTCTGGGGTCTCTTGTTAGATGTAAATGTGCGGCATCCAGACGCTT,Promoter (1-2kb),2,63977337,64098038,120702,2,Fign-201,-1086,Fign-203;Fign-201;Fign-202;Fign-204,Fign;Fign;Fign;Fign,0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,12,84,60344,ENSMUSG00000075324,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3600,cg07928038,0.00000283,0.00000348,0.812300633,0.41724248,gain,ns,-0.00000905,0.00000591,-1.531393924,0.126691881,neg,ns,-0.002536733,0.001730943,-1.465521007,0.143792338,neg,ns,0.842264254,0.000097,0.0000595,1.629734225,0.104173326,pos,ns,0.893704131,Gm12067,Gm12067_Intron,11,24686067,24686116,24686115,24686116,50,+,GTCATTATATCCCTAAACCACATTGTGATACACAGTGCCTTCTGTTTACG,"Intron (Gm12068-201/Gm12068-201, intron 2 of 3)",11,24552438,24553962,1525,2,Gm12067-201,-132105,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,58,100417843,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1552,cg15391310,-0.0000466,0.0000151,-3.092245857,0.002167087,loss,ns,0.0000392,0.0000256,1.531348572,0.126703082,pos,ns,0.007629474,0.007497959,1.01754021,0.309689985,pos,ns,0.509072839,-0.000476771,0.000257854,-1.848995843,0.065410354,neg,ns,0.437282271,Runx1t1,Runx1t1_Intergenic_upstream,4,13692994,13693043,13692994,13692995,50,+,CGTTTATTTGAGACTTTGTTAAATTAGATTATGTAAACACAGGCTGGATA,Distal Intergenic,4,13743436,13893649,150214,1,Runx1t1-201,-50393,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,24,12395,ENSMUSG00000006586,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13839,cg06268964,-0.0000149,0.00000468,-3.182419155,0.001608623,loss,ns,-0.0000122,0.00000794,-1.531108561,0.126762369,neg,ns,-0.001062665,0.002327011,-0.456665279,0.648231455,neg,ns,0.188269899,-0.0000624,0.00008,-0.779505674,0.436276585,neg,ns,0.938849453,Ncbp3,Ncbp3_Exon,11,73070881,73070930,73070881,73070882,50,+,CGTATAAACATCGACATTCTGGTAGTTGCCTGCTCAGCTCTTGGGTAGAC,"Exon (Ncbp3-201/Ncbp3, exon 9 of 13)",11,73047783,73089317,41535,1,Ncbp3-201,23098,Ncbp3-201,Ncbp3,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,66874,ENSMUSG00000020783,conserved gene but different region,11,73070802,73070954,153,*,153,11,0.509803922,1.1094265,0.071895425,0.000000341,CpGisland,TRUE,U10,Tr-S
7679,cg20217113,0.00000349,0.00000233,1.496290284,0.135595398,gain,ns,-0.00000607,0.00000396,-1.531091876,0.126766491,neg,ns,-0.001028095,0.001160651,-0.885791474,0.376416495,neg,ns,0.424331354,-0.0000189,0.0000399,-0.472647598,0.636797202,neg,ns,0.945439733,Zbtb20,Zbtb20_threeUTR,16,43642186,43642235,43642234,43642235,50,+,TGACAGTATCCTTACCTGCCATTTAATATTAGCCTCGTATTTTTCTCACG,3' UTR,16,42907652,43642602,734951,1,Zbtb20-204,734534,Zbtb20-204,Zbtb20,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,9,98,56490,ENSMUSG00000022708,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18654,cg15885769,0.000121361,0.0000163,7.455315368,9.04E-13,gain,yes,-0.0000423,0.0000277,-1.53108475,0.126768252,neg,ns,0.003109381,0.008101984,0.383780189,0.701404455,pos,ns,0.15403148,-0.000082,0.000278627,-0.294432079,0.768624816,neg,ns,0.311301894,Skap1,Skap1_threeUTR,11,96582652,96582701,96582700,96582701,50,+,ATATGCATGGCTTGATGTAAATTGAAATAAATTGTACAGCATACTCTGCG,3' UTR,11,96464593,96758941,294349,1,Skap1-204,118059,Skap1-204;Skap1-203;Skap1-209;Skap1-201;Skap1-205;Skap1-206;Skap1-208,Skap1;Skap1;Skap1;Skap1;Skap1;Skap1;Skap1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,46,78473,ENSMUSG00000057058,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26625,cg13693986,0.000124465,0.0000109,11.44872405,1.51E-25,gain,yes,-0.0000283,0.0000185,-1.531062796,0.126773676,neg,ns,0.001478553,0.005410879,0.273255654,0.784838656,pos,ns,0.105219615,-0.0000776,0.00018608,-0.416847266,0.677078624,neg,ns,0.729031608,Pex14,Pex14_Intron,4,149040334,149040383,149040382,149040383,50,+,TCTAAATTGCTCTAAATACCTTCTGCAAATGAAATTCTAACCCAGCTGCG,"Intron (Pex14-201/Pex14, intron 3 of 8)",4,148960535,149099876,139342,2,Pex14-201,59493,Pex14-201;Pex14-202;Pex14-205;Pex14-203;Pex14-204,Pex14;Pex14;Pex14;Pex14;Pex14,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,41,48,56273,ENSMUSG00000028975,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
859,cg25060297,-0.000000444,0.000000863,-0.513822668,0.607742022,loss,ns,0.00000225,0.00000147,1.530951135,0.126801268,pos,ns,0.001543339,0.0004297,3.591666478,0.000381931,pos,ns,3.418015539,-0.0000424,0.0000148,-2.870881837,0.004375007,neg,ns,0.976346343,Dmtf1,Dmtf1_Exon,5,9132559,9132608,9132607,9132608,50,-,TTTCGTCTTTTGACATCTCAAAGATGATTTCTGTAGCATCTTTTATTCCG,"Exon (Dmtf1-201/Dmtf1, exon 8 of 18)",5,9118801,9161776,42976,2,Dmtf1-201,29168,Dmtf1-201;Dmtf1-209;Dmtf1-202;Dmtf1-208;Dmtf1-214;Dmtf1-212;Dmtf1-213;Dmtf1-204;Dmtf1-207;Dmtf1-215;Dmtf1-216;Dmtf1-211;Dmtf1-205;Tmem243-202,Dmtf1;Dmtf1;Dmtf1;Dmtf1;Dmtf1;Dmtf1;Dmtf1;Dmtf1;Dmtf1;Dmtf1;Dmtf1;Dmtf1;Dmtf1;Tmem243,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,11,23857,ENSMUSG00000042508,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25974,cg06408246,0.0000596,0.0000122,4.902959505,0.00000153,gain,yes,-0.0000316,0.0000206,-1.53090807,0.126811911,neg,ns,0.013633123,0.006048039,2.254139349,0.024885442,pos,ns,1.60405465,-0.000428085,0.000207992,-2.058183112,0.040408187,neg,ns,0.334050515,Abcc9,Abcc9_Exon,6,142614414,142614463,142614414,142614415,50,-,CGTCCTGACCTCCAGCCATCTGTTGGCAGCTGAGAGAAATAAGTAGGCAA,"Exon (Abcc9-203/Abcc9, exon 31 of 40)",6,142587862,142702218,114357,2,Abcc9-203,87755,Abcc9-203;Abcc9-201;Abcc9-204;Abcc9-202;Abcc9-206,Abcc9;Abcc9;Abcc9;Abcc9;Abcc9,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,20928,ENSMUSG00000030249,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
23921,cg22555863,0.000104057,0.00000902,11.53667909,7.38E-26,gain,yes,-0.0000235,0.0000153,-1.530644579,0.126877044,neg,ns,0.006550828,0.004489202,1.459241084,0.145511293,pos,ns,0.837103299,-0.0000321,0.000154383,-0.207879255,0.835459749,neg,ns,0.3058264,Galnt2l,Galnt2l_Intron,8,121127542,121127591,121127590,121127591,50,+,GCCCGGAAATTTTTCCAAATAAACACAGCTTGATTCAACTTGGGTGGGCG,"Intron (Galnt2l-201/Galnt2l, intron 1 of 15)",8,119910841,124345722,4434882,1,Galnt2l-201,1216701,Foxl1-201;Galnt2l-201,Foxl1;Galnt2l,-349;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,28,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
16261,cg03062238,0.00000365,0.00000683,0.534751094,0.59320532,gain,ns,0.0000178,0.0000116,1.530482572,0.126917103,pos,ns,-0.008408547,0.003401401,-2.472083712,0.013969417,neg,ns,1.854821733,0.000270345,0.000116974,2.311153266,0.021480131,pos,ns,0.853163402,Polr3b,Polr3b_Intron,10,84686123,84686172,84686171,84686172,50,-,TCTGACCCTGGGTCCTGCACATTTAGCTCCTTGGATACAATCCTCTGACG,"Intron (Polr3b-201/Polr3b, intron 19 of 27)",10,84622292,84727178,104887,1,Polr3b-201,63831,Polr3b-201,Polr3b,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,5,70428,ENSMUSG00000034453,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15159,cg12021467,0.0000113,0.0000138,0.817271609,0.414400886,gain,ns,0.0000358,0.0000234,1.530368147,0.126945403,pos,ns,-0.001083685,0.006859655,-0.157979477,0.874575826,neg,ns,0.058202531,0.000302916,0.000235903,1.284068815,0.200076728,pos,ns,0.186228124,Cerkl,Cerkl_Promoter,2,79459908,79459957,79459956,79459957,50,+,CGGCATAATCTTAATTAAGATAATTGATTCATATTGCACCTGCGAGAACG,Promoter (3-4kb),2,79338569,79456785,118217,2,Cerkl-210,-3123,Cerkl-210;Neurod1-201,Cerkl;Neurod1,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,13,15,228094,ENSMUSG00000075256,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
9033,cg06812724,-0.0000218,0.00000847,-2.577815771,0.010404254,loss,ns,0.000022,0.0000144,1.530343275,0.126951555,pos,ns,0.005399959,0.004217829,1.280269774,0.201407421,pos,ns,0.695924532,-0.000431131,0.000145051,-2.972274236,0.003187573,neg,ns,0.677144004,Gm13469,Gm13469_Intergenic_upstream,2,46670095,46670144,46670095,46670096,50,+,CGACTCAGCCATCTTTCAGGCTCTCTGAAGTGGCTTTGGCACCCACTGGG,Distal Intergenic,2,46406220,46406569,350,2,Gm13469-201,-263526,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,20,27,383690,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11032,cg16802716,-0.0000045,0.00000224,-2.010709439,0.045221781,loss,ns,0.00000581,0.0000038,1.530340522,0.126952236,pos,ns,0.003197825,0.001112772,2.873746491,0.004336558,pos,ns,2.362854795,-0.000135131,0.0000383,-3.531151728,0.000476576,neg,ns,0.94984768,Gm13518,Gm13518_Intergenic_downstream,2,56322044,56322093,56322092,56322093,50,-,AACCATATCTTATTAAAGCACATTTAATTATTTCTAAGTTTTAAACACCG,Distal Intergenic,2,56039853,56040085,233,1,Gm13518-201,282240,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,37,37,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8354,cg17278116,0.0000777,0.0000101,7.701167707,1.83E-13,gain,yes,-0.0000262,0.0000171,-1.529984974,0.127040206,neg,ns,0.017022258,0.005018404,3.391966568,0.000783922,pos,ns,3.105726956,-0.000321975,0.000172582,-1.865629615,0.063037597,neg,ns,0.226996084,Zeb2,Zeb2_Intron,2,45044888,45044937,45044888,45044889,50,+,CGTGTCAACTAAAATCTGTTTGGATTTCTGTAAATTGGAGTCCGACAAGC,"Intron (Zeb2-212/Zeb2, intron 3 of 10)",2,44983632,45117395,133764,2,Zeb2-212,72458,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-218;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12724,cg05310717,0.000108664,0.00000728,14.92055805,2.57E-38,gain,yes,-0.0000189,0.0000124,-1.529917046,0.127057019,neg,ns,0.009550935,0.00362476,2.634915297,0.008838714,pos,ns,2.053610924,-0.0000374,0.000124655,-0.300151619,0.764262681,neg,ns,0.24059919,Shox2,Shox2_fiveUTR,3,66978312,66978361,66978360,66978361,50,-,ACTTCGCCTCTGCTTGATTTTGGTCTGGCCTTCGTCCTCCATCCCTTTCG,5' UTR,3,66971727,66981318,9592,2,Shox2-203,2957,Rsrc1-206;Shox2-203;Shox2-201;Shox2-202;Shox2-204;Shox2-205,Rsrc1;Shox2;Shox2;Shox2;Shox2;Shox2,0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,7,20429,ENSMUSG00000027833,conserved gene and region,3,66978172,66978476,305,*,305,20,0.567213115,0.829931973,0.065573771,5.99E-12,CpGisland,TRUE,U13,Hc-P
23797,cg27152642,-0.00000476,0.00000126,-3.780065373,0.000188044,loss,ns,-0.00000327,0.00000214,-1.52978673,0.127089277,neg,ns,0.000284646,0.000626331,0.454466372,0.649811246,pos,ns,0.187212777,-0.000022,0.0000215,-1.022896918,0.307154146,neg,ns,0.967036998,Mbnl2,Mbnl2_Exon,14,120404606,120404655,120404654,120404655,50,+,GTTCATTGCTCCCATGGTTCCCCTCCTGAAAGTACCCATGATGCACAGCG,"Exon (Mbnl2-201/Mbnl2, exon 8 of 9)",14,120275669,120431697,156029,1,Mbnl2-201,128937,Mbnl2-201;Mbnl2-204;Mbnl2-202;Mbnl2-203;Mbnl2-208;Mbnl2-210;Mbnl2-205,Mbnl2;Mbnl2;Mbnl2;Mbnl2;Mbnl2;Mbnl2;Mbnl2,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,16,105559,ENSMUSG00000022139,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
251,cg26792746,0.0000208,0.00000703,2.954502121,0.003371608,gain,ns,-0.0000183,0.0000119,-1.529555553,0.127146518,neg,ns,0.023472044,0.003499936,6.706419854,9.45E-11,pos,yes,10.02439365,-0.000170339,0.000120363,-1.415220225,0.158007701,neg,ns,0.915026152,Gm21992,Gm21992_Exon,19,4803962,4804011,4804010,4804011,50,+,GCGCGATTGCGGCTTTGGCATCTGCTTCCTTCTCCATGTGAACAAACGCG,"Exon (Rbm14-201/Rbm14, exon 2 of 3)",19,4742913,4811612,68700,2,Gm21992-203,7601,Gm21992-203;Gm21992-206;Gm21992-204;Gm21992-201;Gm21992-205;Gm21992-202;Rbm14-201;Rbm14-202;Rbm14-203,Gm21992;Gm21992;Gm21992;Gm21992;Gm21992;Gm21992;Rbm14;Rbm14;Rbm14,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,27,48,102902673,ENSMUSG00000096370,mapped to different genes,19,4803923,4804011,89,*,89,8,0.561797753,1.146537842,0.08988764,0.00000491,CpGisland,TRUE,U10,Tr-S
15084,cg09670728,0.00000444,0.00000125,3.542236844,0.00045774,gain,ns,0.00000326,0.00000213,1.529531515,0.127152471,pos,ns,0.000903279,0.000624011,1.447536778,0.14875716,pos,ns,0.827522122,0.0000075,0.0000215,0.3494364,0.726998963,pos,ns,0.042618962,Zfp827,Zfp827_Promoter,8,79028815,79028864,79028863,79028864,50,+,TCTGCATTAGTTTAGGGTTACAGAGGTGAAACTGACAAAGACACAGCCCG,Promoter (<=1kb),8,79028437,79071837,43401,1,Zfp827-201,378,Zfp827-201;Zfp827-202;Zfp827-203;Zfp827-209,Zfp827;Zfp827;Zfp827;Zfp827,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,10,28,622675,ENSMUSG00000071064,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
10539,cg02957408,0.00000573,0.00000468,1.224365654,0.221743954,gain,ns,0.0000122,0.00000795,1.529459246,0.12717037,pos,ns,-0.00091649,0.002328751,-0.393554439,0.694180564,neg,ns,0.15852755,0.0000954,0.0000801,1.191019489,0.234557067,pos,ns,0.926744389,Npas3,Npas3_threeUTR,12,54071907,54071956,54071907,54071908,50,-,CGTTACAAAGCGACAGCTATGGTACATTTGTTTTGTGTGAAGCTAACCGG,3' UTR,12,53248677,54072175,823499,1,Npas3-201,823230,Npas3-204;Npas3-201;Npas3-203,Npas3;Npas3;Npas3,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,103,27386,ENSMUSG00000021010,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9974,cg19517217,-0.00000703,0.00000497,-1.41558491,0.157900923,loss,ns,-0.0000129,0.00000844,-1.529412038,0.127182064,neg,ns,-0.001118901,0.00247231,-0.452572998,0.651172798,neg,ns,0.18630375,-0.000134895,0.000085,-1.586574096,0.113628596,neg,ns,0.937087149,Hectd1,Hectd1_Exon,12,51768570,51768619,51768618,51768619,50,-,TTATCACTGCTGCTTCGGCTTAGATTCATGTTGTTCGTGGCATTAGTCCG,"Exon (Hectd1-201/Hectd1, exon 25 of 43)",12,51743722,51829536,85815,2,Hectd1-201,60917,Hectd1-201;Hectd1-202;Hectd1-204,Hectd1;Hectd1;Hectd1,0;0;-3339,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,19,19,207304,ENSMUSG00000035247,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1917,cg22375533,-0.00000196,0.00000197,-0.999576599,0.318295043,loss,ns,0.00000511,0.00000334,1.529410117,0.12718254,pos,ns,0.001648414,0.000978263,1.685042664,0.092986693,pos,ns,1.031579195,-0.0000871,0.0000336,-2.587541995,0.010121205,neg,ns,0.94416796,Vstm2a,Vstm2a_threeUTR,11,16281942,16281991,16281990,16281991,50,+,TATCACTTTCTCTTCTTAAAGCAAAGAGCAAATCGCCTGTAAAATCTACG,3' UTR,11,16257724,16284186,26463,1,Vstm2a-201,24218,Vstm2a-201;Vstm2a-202;Vstm2a-205;Vstm2a-204;Vstm2a-203,Vstm2a;Vstm2a;Vstm2a;Vstm2a;Vstm2a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,7,211739,ENSMUSG00000048834,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19913,cg25028274,0.00000279,0.00000752,0.371003707,0.710888177,gain,ns,0.0000195,0.0000128,1.529308141,0.127207802,pos,ns,0.003932323,0.003743214,1.050520381,0.294297166,pos,ns,0.53121392,0.0000644,0.000128729,0.500072386,0.617378895,pos,ns,0.907075961,Ogt,Ogt_Exon,X,101653118,101653167,101653166,101653167,50,-,GAAACCAGAATGCTTCTGAAACTCCCACCTGTTGCTCTGAGCCCCACGCG,"Exon (Ogt-204/Ogt, exon 4 of 4)",20,101640060,101682940,42881,1,Ogt-202,13058,Ogt-202;Ogt-206;Ogt-201;Ogt-205;Ogt-204;Ogt-207;Ogt-203,Ogt;Ogt;Ogt;Ogt;Ogt;Ogt;Ogt,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,Exon,32,33,108155,ENSMUSG00000034160,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22737,cg27076613,-0.00000201,0.00000184,-1.091158865,0.276050339,loss,ns,-0.00000479,0.00000313,-1.529160607,0.127244357,neg,ns,0.000957156,0.000916963,1.043832961,0.297375975,pos,ns,0.52669412,-0.0000512,0.0000315,-1.623929876,0.105407112,neg,ns,0.972704454,Meis2,Meis2_Exon,2,115866334,115866383,115866382,115866383,50,+,TGAACTGCAGCATTTCATCTTTGCATATAAGATAATTTGGGCATCAATCG,"Exon (Meis2-207/Meis2, exon 4 of 4)",2,115863064,116065047,201984,2,Meis2-201,198664,Meis2-201;Meis2-203;Meis2-205;Meis2-206;Meis2-204;Meis2-202;Meis2-208;Meis2-219;Meis2-216;Meis2-218;Meis2-214;Meis2-207;Meis2-215,Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,15,97,17536,ENSMUSG00000027210,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24508,cg21411075,-0.000011,0.00000197,-5.559506241,5.84E-08,loss,yes,0.00000512,0.00000335,1.528949717,0.127296623,pos,ns,0.0000291,0.000980815,0.029648801,0.976366223,pos,ns,0.010387253,-0.0000013,0.0000337,-0.038501608,0.969312532,neg,ns,0.089758886,Gabpb1,Gabpb1_fiveUTR,2,126675270,126675319,126675270,126675271,50,-,CGGGGGAAGTGGAATTATTTTTTACCAGCGAAGAGATCAACTTCCACATC,Promoter (<=1kb),2,126627442,126675568,48127,2,Gabpb1-206,249,Gabpb1-206;Gabpb1-205;Gabpb1-204;Gabpb1-201;Gabpb1-203;Gabpb1-202;Gabpb1-208;Gabpb1-207,Gabpb1;Gabpb1;Gabpb1;Gabpb1;Gabpb1;Gabpb1;Gabpb1;Gabpb1,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,7,12,14391,ENSMUSG00000027361,conserved gene but different region,2,126674561,126675949,1389,*,1389,168,0.699064075,0.9905509,0.120950324,2.65E-142,CpGisland,TRUE,U1,Pr-A
16515,cg14852737,-0.0000167,0.0000115,-1.457827286,0.145900453,loss,ns,0.0000298,0.0000195,1.528906489,0.127307339,pos,ns,0.015980062,0.005704362,2.801375924,0.005408397,pos,ns,2.266931419,-0.000258925,0.000196173,-1.319885504,0.187847075,neg,ns,0.828831411,Camkmt,Camkmt_Intron,17,85320101,85320150,85320101,85320102,50,-,CGAAGGCTTTTCAGACTGCGATGAGATGACATTGATGATGACACGTTGAG,"Intron (Camkmt-201/Camkmt, intron 3 of 10)",17,85090552,85458588,368037,1,Camkmt-201,229549,Camkmt-201,Camkmt,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,41,44,73582,ENSMUSG00000071037,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1255,cg06074633,0.0000442,0.000014,3.158444461,0.001742424,gain,ns,0.0000363,0.0000238,1.5289031,0.127308179,pos,ns,0.038123053,0.006965116,5.473427033,9.12E-08,pos,ns,7.039946098,-0.001107976,0.00023953,-4.625629365,0.00000549,neg,ns,0.143626506,Bcor,Bcor_Exon,X,12136903,12136952,12136903,12136904,50,+,CGGTCAGTACGGGCTGTTAACAGGCAGTTGCAATCAGTTTCCGAAAGGTC,"Exon (Bcor-208/Bcor, exon 3 of 5)",20,12036743,12160355,123613,2,Bcor-201,23403,Bcor-201;Bcor-208,Bcor;Bcor,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,74,71458,ENSMUSG00000040363,conserved gene but different region,X,12136836,12137187,352,*,352,27,0.613636364,0.817337461,0.076704546,1.07E-17,CpGisland,TRUE,NA,NRS
9969,cg20593457,-0.0000169,0.0000112,-1.509946478,0.132075653,loss,ns,-0.0000291,0.0000191,-1.528751329,0.127345807,neg,ns,-0.002966444,0.005584723,-0.531171237,0.595680486,neg,ns,0.224986627,-0.000475926,0.000192058,-2.478030873,0.013743264,neg,ns,0.769009983,Satb1,Satb1_Intron,17,51764691,51764740,51764691,51764692,50,+,CGAGGGGTTTGCTGTGGAATAAAATTAGATTCCAACATCTGCCACCATTA,"Intron (Satb1-208/Satb1, intron 9 of 10)",17,51736187,51832672,96486,2,Satb1-208,67932,Satb1-208;Satb1-213;Satb1-204;Satb1-214;Satb1-203;Satb1-211;Satb1-207,Satb1;Satb1;Satb1;Satb1;Satb1;Satb1;Satb1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,28,36,20230,ENSMUSG00000023927,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16742,cg27387390,0.0000551,0.0000117,4.726976688,0.00000346,gain,ns,0.0000303,0.0000198,1.528408738,0.127430776,pos,ns,0.008322735,0.005800392,1.434857444,0.152335801,pos,ns,0.81719802,-0.00009,0.000199475,-0.450964394,0.652330487,neg,ns,0.40820258,Esrrb,Esrrb_Intron,12,86364966,86365015,86364966,86364967,50,-,CGAATATTTATGAGTCTCCCAGTGAGAGTTTAAACATTCAACTCCAAAAG,"Intron (Esrrb-204/Esrrb, intron 1 of 6)",12,86361117,86521628,160512,1,Esrrb-204,3849,Esrrb-204,Esrrb,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,19,26380,ENSMUSG00000021255,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2086,cg01784456,9.92E-08,0.00000331,0.029954037,0.976122984,gain,ns,0.0000086,0.00000563,1.528408212,0.127430907,pos,ns,0.00544873,0.001648037,3.306194596,0.001056773,pos,ns,2.976018108,-0.000139042,0.0000567,-2.45328964,0.014705949,neg,ns,0.938207257,A930004D18Rik,A930004D18Rik_Intron,2,18030868,18030917,18030916,18030917,50,+,TCACAAAGTGTCTTGATCTTTCTTTGGGAGATACTGTTAAGGGGTTTCCG,"Intron (A930004D18Rik-201/A930004D18Rik, intron 1 of 1)",2,18025193,18037737,12545,2,A930004D18Rik-201,6820,A930004D18Rik-201;A930004D18Rik-202;A930004D18Rik-203,A930004D18Rik;A930004D18Rik;A930004D18Rik,0;-2108;-1997,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,10,77940,ENSMUSG00000054057,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
22542,cg02241397,0.0000343,0.00000276,12.41528226,5.29E-29,gain,yes,-0.00000717,0.00000469,-1.528385996,0.127436418,neg,ns,0.001032073,0.00137351,0.751412977,0.452974214,pos,ns,0.34392652,0.0000211,0.0000472,0.44773818,0.654654883,pos,ns,0.071308094,Tal1,Tal1_Promoter,4,115056600,115056649,115056648,115056649,50,+,CTCCGGTGAAATTGCCAAATTAAAATGAATCATTTGGCCCATAATGGCCG,Promoter (<=1kb),4,115056426,115071755,15330,1,Tal1-201,174,Tal1-201;Tal1-202;Tal1-203;Tal1-204,Tal1;Tal1;Tal1;Tal1,0;0;-1162;-2859,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,3,4,21349,ENSMUSG00000028717,conserved gene and region,4,115056648,115057443,796,*,796,76,0.639447236,0.935920047,0.095477387,4.01E-56,CpGisland,TRUE,NA,NRS
6825,cg13018935,0.0000132,0.00000205,6.454314055,4.19E-10,gain,yes,0.00000532,0.00000348,1.528359919,0.127442888,pos,ns,-0.002173077,0.001020709,-2.128986909,0.034043346,neg,ns,1.46796776,0.000115292,0.0000351,3.284479877,0.001138668,pos,ns,0.055477457,Spry4,Spry4_Intron,18,38631667,38631716,38631667,38631668,50,+,CGCAGGCGCCCGGAGCCTCACAAAAGAACAGGATGTTGTTGATTTGTCAC,"Intron (9630014M24Rik-203/9630014M24Rik-203, intron 2 of 2)",18,38586247,38601415,15169,2,Spry4-201,-30252,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,4,24066,ENSMUSG00000024427,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
15829,cg16195157,-0.0000244,0.00000758,-3.218612932,0.001424535,loss,ns,0.0000197,0.0000129,1.528358867,0.127443149,pos,ns,0.002615554,0.003774774,0.692903418,0.488888925,pos,ns,0.310789801,0.0000167,0.000129814,0.128477914,0.897854085,pos,ns,0.605975462,Dnajb1,Dnajb1_threeUTR,8,83610920,83610969,83610968,83610969,50,+,TCGTACTGCTGAATGTTTTCCAGAGCATATATTACAATCTTTCAAAGTCG,3' UTR,8,83608193,83612653,4461,1,Dnajb1-201,2727,Dnajb1-201;Dnajb1-202;Tecr-204,Dnajb1;Dnajb1;Tecr,0;0;-2949,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,81489,ENSMUSG00000005483,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17347,cg20742014,0.00000654,0.000143868,0.045488609,0.963747142,gain,ns,0.000373526,0.000244413,1.528257045,0.127468413,pos,ns,0.034164443,0.07160475,0.477125366,0.633609038,pos,ns,0.198178636,0.000978767,0.002462481,0.397471827,0.691293099,pos,ns,0.53228755,Agap1,Agap1_Intron,1,89798638,89798687,89798686,89798687,50,+,GCCTTTCTAGTTGCCACACAGTGATGTGATCATTATCTGCCACCTCGTCG,"Intron (Agap1-201/Agap1, intron 13 of 17)",1,89454806,89897617,442812,1,Agap1-201,343832,Agap1-201;Agap1-204;Agap1-202;Agap1-205,Agap1;Agap1;Agap1;Agap1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,29,347722,ENSMUSG00000055013,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19462,cg19415472,-0.000024,0.00000409,-5.871311254,1.11E-08,loss,yes,0.0000106,0.00000694,1.528088786,0.12751017,pos,ns,-0.003615257,0.002034419,-1.777046821,0.076541023,neg,ns,1.116105737,-0.0000149,0.00007,-0.213671212,0.830943924,neg,ns,0.9167412,Gm12685,Gm12685_Intergenic_downstream,4,99374870,99374919,99374870,99374871,50,+,CGGCTGTAAGTGAAATTGAAATTGAAGTTATAATTGATATCGGGGCCCAT,Distal Intergenic,4,99418498,99418711,214,2,Gm12685-201,43792,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,13,13,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3256,cg16670149,-0.0000038,0.0000148,-0.256857934,0.797458836,loss,ns,0.0000384,0.0000251,1.527793495,0.127583479,pos,ns,-0.001567749,0.007362552,-0.212935479,0.831517246,neg,ns,0.080128739,-0.00000631,0.000253198,-0.024919193,0.980135451,neg,ns,0.46051835,Mamdc2,Mamdc2_Exon,19,23374013,23374062,23374013,23374014,50,-,CGGTTCACAAAGCCACAGAGATGATTTTCTTCAAAGTCACATTCTGGGGA,"Exon (Mamdc2-201/Mamdc2, exon 5 of 14)",19,23302609,23448398,145790,2,Mamdc2-201,74336,Mamdc2-201;Mamdc2-202,Mamdc2;Mamdc2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,71738,ENSMUSG00000033207,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20347,cg03553364,0.0000779,0.00000829,9.405502495,1.20E-18,gain,yes,0.0000215,0.0000141,1.527681109,0.127611389,pos,ns,0.009240693,0.004124359,2.240515898,0.025765519,pos,ns,1.588961111,-0.0000162,0.000141836,-0.11403002,0.909287811,neg,ns,0.173319702,Hoxc5,Hoxc5_Exon,15,103009804,103009853,103009804,103009805,50,+,CGGGGGCCGTATGACTATGGATCTAATTCCTTTTACCAGGAGAAAGACAT,"Exon (Hoxc6-202/Hoxc6, exon 2 of 3)",15,102967443,103015676,48234,1,Hoxc5-202,42361,Hoxc5-202;Hoxc5-201;Hoxc6-202;Hoxc6-203;Hoxc6-201,Hoxc5;Hoxc5;Hoxc6;Hoxc6;Hoxc6,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,72,134,15424,ENSMUSG00000022485,mapped to different genes,15,103009647,103009812,166,*,166,14,0.602409639,0.948184415,0.084337349,5.77E-10,CpGisland,TRUE,U13,Hc-P
17027,cg21622464,-0.0000125,0.00000569,-2.197020252,0.028758777,loss,ns,-0.0000148,0.00000967,-1.527495465,0.127657502,neg,ns,0.010210126,0.002834374,3.602250525,0.00036731,pos,ns,3.434966891,-0.00051461,0.0000975,-5.279467361,0.000000244,neg,yes,0.86723837,Dynll2,Dynll2_Exon,11,87983945,87983994,87983993,87983994,50,-,TCCTGTTGCATGTCCTCAGACATGTCTGCGTTCTTGATCACTGCCTTCCG,Promoter (<=1kb),11,87979525,87984012,4488,2,Dynll2-204,18,Dynll2-204;Dynll2-202;Dynll2-201;Dynll2-203,Dynll2;Dynll2;Dynll2;Dynll2,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,5,68097,ENSMUSG00000020483,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11379,cg10173451,-0.00000853,0.00000467,-1.826724894,0.068702648,loss,ns,-0.0000121,0.00000793,-1.527368569,0.127689029,neg,ns,-0.000121616,0.002322847,-0.052356462,0.958278386,neg,ns,0.018508307,-0.000158775,0.0000799,-1.98760735,0.047734689,neg,ns,0.909672717,Zdhhc20,Zdhhc20_Exon,14,57873940,57873989,57873988,57873989,50,-,ACCATACAAACATAACAAAGAACAGATGGAAAGCCACAAGGTAAACAACG,"Exon (Zdhhc20-201/Zdhhc20, exon 3 of 13)",14,57832703,57890276,57574,2,Zdhhc20-201,16287,Zdhhc20-201;Zdhhc20-205;Zdhhc20-203,Zdhhc20;Zdhhc20;Zdhhc20,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,75965,ENSMUSG00000021969,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25620,cg17326669,-0.0000127,0.00000625,-2.039826923,0.042214999,loss,ns,-0.0000162,0.0000106,-1.52725507,0.127717234,neg,ns,-0.002188858,0.003108501,-0.704152128,0.481866646,neg,ns,0.317073134,0.0000438,0.000106901,0.410078921,0.682031306,pos,ns,0.764277943,Jag1,Jag1_Intergenic_upstream,2,137447116,137447165,137447116,137447117,50,-,CGACCGTGGTGTCTGTATGTATGTGGTCATAGATTTGTTATAACCTCTTG,Distal Intergenic,2,137081456,137116644,35189,2,Jag1-201,-330521,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,16,16449,ENSMUSG00000027276,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19295,cg14287475,-0.000000615,0.00000107,-0.57520635,0.565568998,loss,ns,0.00000278,0.00000182,1.527210938,0.127728202,pos,ns,0.000725194,0.000532462,1.361964337,0.174197996,pos,ns,0.758956844,-0.0000262,0.0000183,-1.430886397,0.153470033,neg,ns,0.971400263,Foxp1,Foxp1_Exon,6,98941599,98941648,98941647,98941648,50,+,TTAACGTTTTCTACTCGCACAAAACACTTGTGAAGACTAAGATTATGACG,"Exon (Foxp1-206/Foxp1, exon 15 of 18)",6,98925338,99266515,341178,2,Foxp1-206,324867,Foxp1-206;Foxp1-204;Foxp1-220;Foxp1-230;Foxp1-225;Foxp1-201;Foxp1-205;Foxp1-207;Foxp1-208;Foxp1-226;Foxp1-228;Foxp1-221;Foxp1-222;Foxp1-210,Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,87,108655,ENSMUSG00000030067,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14032,cg06797643,0.00000282,0.00000755,0.373897615,0.708736082,gain,ns,0.0000196,0.0000128,1.527101178,0.127755483,pos,ns,0.000148286,0.003759834,0.039439469,0.9685654,pos,ns,0.013871049,-0.000265171,0.0001293,-2.050817247,0.041125142,neg,ns,0.675612221,Robo2,Robo2_Intron,16,74313359,74313408,74313407,74313408,50,+,CACTAAAAGACATTTTAACTGAGAGCTGTCACATCCGTCATCTCCACTCG,"Intron (Robo2-203/Robo2, intron 2 of 27)",16,73891839,74410989,519151,2,Robo2-203,97581,Robo2-203;Robo2-210;Robo2-202;Robo2-211;Robo2-206,Robo2;Robo2;Robo2;Robo2;Robo2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,11,268902,ENSMUSG00000052516,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4861,cg09885292,-0.00000939,0.00000297,-3.161545549,0.001724556,loss,ns,-0.00000771,0.00000505,-1.527097743,0.127756337,neg,ns,0.00000894,0.001478439,0.006048287,0.995178085,pos,ns,0.002099196,-0.000066,0.0000508,-1.298860408,0.194957113,neg,ns,0.94361685,Zbtb44,Zbtb44_Exon,9,31066775,31066824,31066823,31066824,50,-,GCCACTTTCACTTCCTTCGGGGAATATAAACACCACATGAGGGTTTCCCG,"Exon (Zbtb44-206/Zbtb44, exon 4 of 5)",9,31030644,31070233,39590,1,Zbtb44-205,36131,Zbtb44-205;Zbtb44-201;Zbtb44-206;Zbtb44-202;Zbtb44-204,Zbtb44;Zbtb44;Zbtb44;Zbtb44;Zbtb44,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,15,235132,ENSMUSG00000047412,conserved gene and region,9,31066713,31066901,189,*,189,12,0.486772487,1.07641196,0.063492064,0.00000032,CpGisland,TRUE,U10,Tr-S
6234,cg00090461,0.00000291,0.00000333,0.874171802,0.382701408,gain,ns,0.00000864,0.00000566,1.526983342,0.127784777,pos,ns,0.000644361,0.00165778,0.38868877,0.697773212,pos,ns,0.156285708,0.0000178,0.000057,0.312393697,0.75495137,pos,ns,0.878783611,Casr,Casr_Exon,16,36495201,36495250,36495201,36495202,50,-,CGGCAGAGACAAACTTGCCATAGGTGCTGGCATAGGCTGGAATGAAGGAG,"Exon (Casr-201/Casr, exon 7 of 7)",16,36493696,36562134,68439,2,Casr-201,66884,Casr-201;Casr-202;Casr-203,Casr;Casr;Casr,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,12374,ENSMUSG00000051980,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5369,cg24382823,0.00000346,0.00000075,4.615768842,0.00000574,gain,ns,-0.00000194,0.00000127,-1.526982197,0.127785062,neg,ns,0.0000868,0.000373035,0.232630201,0.816202084,pos,ns,0.088202301,-0.00000155,0.0000128,-0.12083784,0.903897761,neg,ns,0.022279796,Lmx1b,Lmx1b_Intron,2,33631032,33631081,33631032,33631033,50,-,CGAAATCTCCACAGATACAAGTCTGTTAAGAGTAAATATTTGTGGATTGA,"Intron (Lmx1b-201/Lmx1b, intron 2 of 7)",2,33560965,33640608,79644,2,Lmx1b-201,9527,Lmx1b-201;Lmx1b-203;Lmx1b-204;Lmx1b-202,Lmx1b;Lmx1b;Lmx1b;Lmx1b,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,26,16917,ENSMUSG00000038765,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
4220,cg05520357,0.0000587,0.000014,4.182508112,0.0000376,gain,ns,-0.0000364,0.0000238,-1.526974089,0.127787078,neg,ns,0.021752897,0.006979415,3.116722057,0.002000047,pos,ns,2.698959833,-0.000903562,0.000240022,-3.76450439,0.000199598,neg,ns,0.226222179,Rxra,Rxra_Intron,2,27681933,27681982,27681981,27681982,50,-,TGCGCCCTAGAGTTACAAAGCAATTGTCTAGCTCAGCAGCTGAATGAGCG,"Intron (Rxra-204/Rxra, intron 1 of 3)",2,27676440,27741898,65459,1,Rxra-204,5493,Rxra-204;Rxra-201;Rxra-206,Rxra;Rxra;Rxra,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,6,20181,ENSMUSG00000015846,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26399,cg01845954,0.00000138,0.000000817,1.694569784,0.091161329,gain,ns,-0.00000212,0.00000139,-1.526936199,0.127796498,neg,ns,-0.000316385,0.000406481,-0.778352203,0.436955086,neg,ns,0.359563201,0.0000182,0.000014,1.302160051,0.193828339,pos,ns,0.019339067,Gsx1,Gsx1_Intergenic_downstream,5,147223409,147223458,147223457,147223458,50,-,AGCCCCCATCTACCAGACTCACCCTTGTCTTTATTCCAACTAATTTTTCG,Distal Intergenic,5,147188696,147190947,2252,1,Gsx1-201,34762,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,12,20,14842,ENSMUSG00000053129,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
5416,cg03561281,-0.00000185,0.00000201,-0.917172279,0.35976535,loss,ns,0.00000523,0.00000342,1.526920774,0.127800334,pos,ns,0.001829576,0.001002705,1.824640449,0.069017673,pos,ns,1.161039688,-0.000058,0.0000345,-1.682278337,0.093521812,neg,ns,0.95348082,Nsd2,Nsd2_threeUTR,5,33882814,33882863,33882862,33882863,50,-,AGTTTGCCATCCCAAAAATGTTCCCCCAAATATTCAGAAAATGAAGCACG,3' UTR,5,33820725,33897966,77242,1,Nsd2-203,62089,Nsd2-203;Nsd2-202;Nsd2-207;Nsd2-208;Nsd2-201;Nsd2-209;Nsd2-215;Nsd2-214;Nsd2-212;Nsd2-206,Nsd2;Nsd2;Nsd2;Nsd2;Nsd2;Nsd2;Nsd2;Nsd2;Nsd2;Nsd2,0;0;0;0;0;0;4599;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,2,107823,ENSMUSG00000057406,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23708,cg01476696,0.0000301,0.000012,2.505502891,0.012740216,gain,ns,0.0000311,0.0000204,1.526753678,0.127841887,pos,ns,-0.000024,0.00597478,-0.004021673,0.996793765,neg,ns,0.001394687,-0.0000331,0.000205472,-0.161185555,0.872052251,neg,ns,0.624446586,Tmem196,Tmem196_Exon,12,120016156,120016205,120016156,120016157,50,-,CGACTTGCCCAGCTGCCCGGTGGTGCCCCCGACACCAGAGTTACCTACAA,"Exon (Tmem196-205/Tmem196, exon 4 of 5)",12,119945957,120019211,73255,1,Tmem196-201,70199,Tmem196-201;Tmem196-202;Tmem196-204;Tmem196-205;Tmem196-203,Tmem196;Tmem196;Tmem196;Tmem196;Tmem196,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,217951,ENSMUSG00000048004,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24136,cg21805940,0.0000073,0.00000313,2.332806688,0.020297896,gain,ns,-0.00000812,0.00000532,-1.526670253,0.127862637,neg,ns,-0.002597714,0.001558011,-1.667327675,0.096459125,neg,ns,1.015656682,-0.0000902,0.0000536,-1.683527354,0.093279721,neg,ns,0.874039545,Ggact,Ggact_Intron,14,122882619,122882668,122882619,122882620,50,-,CGTAGAAGTGACCCAGGGTTCCTTGCAGCGGGCCCAATTTTAGGCAGAGG,"Intron (Pcca-201/Pcca, intron 22 of 23)",14,122816223,122913120,96898,2,Ggact-202,30452,Ggact-202;Pcca-201;Pcca-213;Pcca-210;Pcca-203;Pcca-206;Pcca-205,Ggact;Pcca;Pcca;Pcca;Pcca;Pcca;Pcca,0;0;0;0;0;0;-4235,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,3,223267,ENSMUSG00000041625,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14084,cg04318752,0.0000268,0.0000121,2.205782538,0.028132663,gain,ns,0.0000315,0.0000206,1.526495413,0.127906132,pos,ns,-0.001234721,0.006045765,-0.204229008,0.838308556,neg,ns,0.076596101,0.0000716,0.000207913,0.344505399,0.730699828,pos,ns,0.195990662,Evx2,Evx2_threeUTR,2,74654034,74654083,74654034,74654035,50,+,CGTCCAAGTTACCAAAATGAAAATCGGCAATTGAGATGATAAGAACGTGG,3' UTR,2,74652991,74659557,6567,2,Evx2-201,5474,Evx2-201;Evx2-202,Evx2;Evx2,0;5336,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,8,35,14029,ENSMUSG00000001815,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
852,cg12903031,-0.0000637,0.0000153,-4.162995211,0.0000407,loss,ns,-0.0000396,0.000026,-1.526300355,0.127954671,neg,ns,0.032529582,0.007610546,4.274276874,0.0000256,pos,ns,4.59255195,-0.00158085,0.000261726,-6.040095473,4.41E-09,neg,yes,0.261750648,Rps18-ps2,Rps18-ps2_Intergenic_downstream,4,9026914,9026963,9026914,9026915,50,-,CGTGAGAACAAGAGCAGCCATGTGTTGATTTTTCTGGATTCTTTTTGGAT,Distal Intergenic,4,8941259,8941656,398,1,Rps18-ps2-201,85704,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,3,666782,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5031,cg16108207,0.0000665,0.0000104,6.378315019,6.50E-10,gain,yes,-0.000027,0.0000177,-1.526236362,0.127970599,neg,ns,0.011662311,0.005185656,2.248955906,0.025217161,pos,ns,1.598303807,-0.000660579,0.000178334,-3.704160132,0.000251052,neg,ns,0.13478405,Cpeb4,Cpeb4_Exon,11,31873363,31873412,31873411,31873412,50,+,CCTGGATGGAAGATAGCTTGAACAGGGCTGACAACATTTTTCCTTTTCCG,"Exon (Cpeb4-201/Cpeb4, exon 1 of 10)",11,31872211,31931577,59367,1,Cpeb4-201,1152,Cpeb4-201;Cpeb4-202;Cpeb4-203,Cpeb4;Cpeb4;Cpeb4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,10,67579,ENSMUSG00000020300,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
26727,cg24912150,-0.0000144,0.00000704,-2.049019388,0.041301771,loss,ns,-0.0000183,0.000012,-1.52621411,0.127976137,neg,ns,-0.007438143,0.003503481,-2.123072223,0.034539894,neg,ns,1.461678998,0.0000419,0.000120484,0.34787623,0.72816923,pos,ns,0.782678624,Huwe1,Huwe1_Exon,X,151906299,151906348,151906299,151906300,50,+,CGTGCTGATGGATGAAGCTCCTTCCAACCTCAGCCAAGCTTCCACCTTGC,"Exon (Huwe1-201/Huwe1, exon 52 of 83)",20,151803327,151935417,132091,1,Huwe1-201,102972,Huwe1-201;Huwe1-202;Huwe1-219;Huwe1-208;Huwe1-215,Huwe1;Huwe1;Huwe1;Huwe1;Huwe1,0;0;0;-2497;-2497,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,22,28,59026,ENSMUSG00000025261,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22275,cg22788085,0.0000693,0.0000139,5.000276338,0.00000096,gain,yes,-0.0000359,0.0000236,-1.526140467,0.127994469,neg,ns,-0.020015903,0.006899641,-2.901006265,0.003985794,neg,ns,2.399485119,0.000809578,0.000237278,3.411936615,0.000730619,pos,ns,0.788271984,Tead1,Tead1_Exon,7,112841927,112841976,112841927,112841928,50,-,CGAGAAATTCAAGCCGCCATTAAGGTACGTCTGGCTTGCCCACTTGTAGG,"Exon (Tead1-217/Tead1, exon 4 of 14)",7,112679318,112899459,220142,1,Tead1-203,162609,Tead1-203;Tead1-216;Tead1-217;Tead1-201;Tead1-204;Tead1-214;Tead1-206;Tead1-202;Tead1-211;Tead1-207;Tead1-210;Tead1-212;Tead1-208;Tead1-209;Tead1-215,Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,16,21676,ENSMUSG00000055320,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21845,cg02619656,0.000000436,0.000000925,0.470879091,0.638058244,gain,ns,0.0000024,0.00000157,1.526049703,0.128017065,pos,ns,0.00045214,0.000460411,0.982035759,0.326848027,pos,ns,0.485654133,-0.0000126,0.0000158,-0.794158274,0.427710802,neg,ns,0.982907999,Gm1943,Gm1943_Exon,8,109251141,109251190,109251189,109251190,50,-,TGTCATGGCGGAGACGACGGCCTTTGTCTTGCTGGGTGTGAAAACATCCG,"Exon (D030068K23Rik-202/D030068K23Rik-202, exon 10 of 10)",8,109340691,109340864,174,2,Gm1943-201,89723,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,28,384864,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7884,cg23561706,-0.000000394,0.00000208,-0.189562073,0.849776366,loss,ns,0.00000539,0.00000353,1.526021766,0.128024021,pos,ns,0.001542232,0.001035346,1.489581385,0.137351007,pos,ns,0.862168153,-0.00005,0.0000356,-1.404730575,0.161102608,neg,ns,0.948023258,Runx2,Runx2_threeUTR,17,44608141,44608190,44608189,44608190,50,-,ATGGAGTGCTGCTGGTCTGGAAGGGTCCACTCTGGCTTTGGGAAGAGCCG,3' UTR,17,44495987,44736176,240190,2,Runx2-212,127986,Runx2-212;Runx2-214;Runx2-203;Runx2-202;Runx2-213;Runx2-204;Runx2-210;Runx2-211;Runx2-207;Runx2-201;Runx2-209,Runx2;Runx2;Runx2;Runx2;Runx2;Runx2;Runx2;Runx2;Runx2;Runx2;Runx2,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,10,20,12393,ENSMUSG00000039153,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8660,cg17216365,0.0000388,0.0000065,5.95990004,6.86E-09,gain,yes,-0.0000169,0.000011,-1.525976994,0.128035169,neg,ns,-0.0000631,0.003236122,-0.01950204,0.984453156,neg,ns,0.006804944,0.000126166,0.00011129,1.133665396,0.257810874,pos,ns,0.841288311,Btrc,Btrc_Intron,19,45494113,45494162,45494113,45494114,50,-,CGGGGAAATGATGATCCTCACTCGGTAATTAACTAAATGAGAAAGTTAAA,"Intron (Btrc-204/Btrc, intron 1 of 2)",19,45363734,45507736,144003,1,Btrc-204,130379,Btrc-204;Btrc-201;Btrc-210;Btrc-202;Btrc-203;Btrc-209,Btrc;Btrc;Btrc;Btrc;Btrc;Btrc,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,63,98,12234,ENSMUSG00000025217,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25623,cg20404992,0.0000134,0.00000642,2.07836166,0.038498437,gain,ns,0.0000167,0.0000109,1.525912565,0.128051213,pos,ns,0.005109116,0.003197161,1.598016508,0.111058049,pos,ns,0.954449959,-0.000129326,0.00010995,-1.176228481,0.24040604,neg,ns,0.559888986,Epo,Epo_Exon,5,137523838,137523887,137523838,137523839,50,-,CGACTCAGGGTCCAATTCTAGAACAACTCCAGCTGCAACATAAAGTGAGT,"Exon (Gigyf1-201/Gigyf1, exon 17 of 24)",5,137483020,137533242,50223,2,Epo-202,9355,Epo-202;Gigyf1-202;Gigyf1-201;Gnb2-201;Gnb2-213;Gnb2-209;Gnb2-203;Gnb2-204;Gnb2-202;Gnb2-212;Gnb2-214;Gnb2-215;Gnb2-208;Gnb2-205;Gnb2-210;Gnb2-211,Epo;Gigyf1;Gigyf1;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2,0;5290;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,9,13856,ENSMUSG00000029711,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13780,cg00068760,-0.0000059,0.00000162,-3.647702034,0.0003103,loss,ns,0.00000419,0.00000275,1.525880544,0.128059187,pos,ns,0.001701599,0.000805349,2.112871232,0.035410896,pos,ns,1.450863078,-0.0000225,0.0000277,-0.813936639,0.416306006,neg,ns,0.057757382,Ube2g1,Ube2g1_Intron,11,72608407,72608456,72608407,72608408,50,+,CGTTTGCGGCTTCCAGGTTGACTTTTTAGGGGGTTGGCTCCTACTCTGCT,"Intron (Ube2g1-201/Ube2g1, intron 1 of 5)",11,72607283,72686481,79199,1,Ube2g1-201,1124,Ube2g1-201;Ube2g1-203;Ube2g1-202,Ube2g1;Ube2g1;Ube2g1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,5,67128,ENSMUSG00000020794,conserved gene and region,11,72607244,72608414,1171,*,1171,154,0.762596072,0.915354551,0.131511529,5.14E-137,CpGisland,TRUE,NA,NRS
12654,cg09622033,-0.000000864,0.00000447,-0.193428204,0.846750302,loss,ns,0.0000116,0.00000759,1.525860438,0.128064195,pos,ns,0.004359267,0.002224438,1.959715732,0.050924759,pos,ns,1.293071018,-0.000150285,0.0000765,-1.964553373,0.050358934,neg,ns,0.912744205,Map2,Map2_Intron,1,66417115,66417164,66417163,66417164,50,+,GTGTCACGTTCTGGGGATTCCTATTTTCATTCTGTGTGTTTGGTTAGACG,"Intron (Map2-206/Map2, intron 8 of 14)",1,66175313,66442028,266716,1,Map2-206,241802,Map2-206;Map2-205;Map2-207;Map2-201;Map2-204;Map2-225;Map2-202;Map2-203;Map2-223;Map2-215;Map2-217;Map2-216;Map2-213;Map2-220;Map2-221;Map2-222,Map2;Map2;Map2;Map2;Map2;Map2;Map2;Map2;Map2;Map2;Map2;Map2;Map2;Map2;Map2;Map2,0;0;0;0;0;0;0;0;36603;36413;0;30137;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,3,17756,ENSMUSG00000015222,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13877,cg04762682,-0.0000138,0.0000128,-1.077822173,0.281951105,loss,ns,0.0000333,0.0000218,1.525758552,0.128089571,pos,ns,0.016969157,0.006385535,2.657436843,0.008281797,pos,ns,2.081875428,-0.000518,0.000219598,-2.358855243,0.018951588,neg,ns,0.782960221,Ola1,Ola1_Intron,2,73180447,73180496,73180447,73180448,50,-,CGTTTTAGTCTAATCATCCATGATGAGAAGAGACTGACAAAAACTCTTAA,"Intron (Ola1-201/Ola1, intron 4 of 10)",2,73092801,73214447,121647,2,Ola1-201,33951,Gm13664-201;Ola1-201;Ola1-206;Ola1-203;Ola1-202,Gm13664;Ola1;Ola1;Ola1;Ola1,3836;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,19,67059,ENSMUSG00000027108,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10532,cg06391284,-0.0000172,0.00000671,-2.570204621,0.010630665,loss,ns,0.0000174,0.0000114,1.525437773,0.128169492,pos,ns,-0.004448445,0.003338609,-1.332424659,0.183699283,neg,ns,0.735892539,-0.000159827,0.000114814,-1.392043235,0.164907156,neg,ns,0.757369622,Npas3,Npas3_Intron,12,54052961,54053010,54053009,54053010,50,-,ATTCCATGCTGTTTTGCATCAATAACCCCTACACTTCCCTCCTGAAGGCG,"Intron (Npas3-204/Npas3, intron 8 of 10)",12,53248157,54069532,821376,1,Npas3-204,804804,Npas3-204;Npas3-201;Npas3-203,Npas3;Npas3;Npas3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,83,103,27386,ENSMUSG00000021010,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10542,cg02578827,0.0000193,0.00000935,2.063767074,0.039871795,gain,ns,-0.0000242,0.0000159,-1.525426186,0.128172379,neg,ns,-0.010550135,0.004654572,-2.26661755,0.024102419,neg,ns,1.617939371,0.000297063,0.00016007,1.855829968,0.064426679,pos,ns,0.520884384,Gm8594,Gm8594_Intergenic_upstream,18,54121708,54121757,54121756,54121757,50,+,TTTCCCTCTAAATGACAGGCTTGACAGATGGGCCAAAAGCACCGCAGACG,Distal Intergenic,18,54030699,54031308,610,2,Gm8594-201,-90400,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,3,667360,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
72,cg25682618,-0.0000221,0.00000594,-3.714241537,0.000241665,loss,ns,-0.0000154,0.0000101,-1.525333383,0.128195508,neg,ns,-0.004988591,0.002956255,-1.687469491,0.092518946,neg,ns,1.033769323,-0.0000312,0.000101665,-0.306543136,0.75939693,neg,ns,0.874459263,Plag1,Plag1_threeUTR,4,3905621,3905670,3905621,3905622,50,-,CGTTTCCCTGAAGGGACTTTCTGGGTATCTCTTACTTCTGACAAATCACC,3' UTR,4,3900996,3938382,37387,2,Plag1-201,32712,Plag1-201;Plag1-202;Plag1-204,Plag1;Plag1;Plag1,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,22,56711,ENSMUSG00000003282,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8549,cg18594436,0.0000465,0.0000187,2.485834434,0.013451449,gain,ns,-0.0000484,0.0000318,-1.525195731,0.128229821,neg,ns,0.013981293,0.009305653,1.50245165,0.133998458,pos,ns,0.8729002,-0.000474604,0.000320021,-1.483041191,0.139079374,neg,ns,0.279326784,Btrc,Btrc_Exon,19,45329898,45329947,45329946,45329947,50,-,AAATCCTTTCAGCTCTTCGCCAAACCCCTAGTGAAAGACAATCAGGCTCG,"Exon (Gm28578-209/Gm28578-209, exon 7 of 7)",19,45363734,45507736,144003,1,Btrc-204,-33836,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,30,98,12234,ENSMUSG00000025217,conserved gene but different region,19,45329908,45330151,244,*,244,14,0.471311475,1.056277056,0.057377049,8.59E-08,CpGisland,TRUE,NA,NRS
14550,cg21239962,-0.00000182,0.00000247,-0.73576154,0.462432155,loss,ns,0.00000641,0.0000042,1.525149122,0.128241441,pos,ns,0.00313763,0.001230744,2.549376989,0.011272902,pos,ns,1.947964272,-0.0000815,0.0000423,-1.92640656,0.054967685,neg,ns,0.936272027,Gm50360,Gm50360_Intergenic_downstream,18,76393518,76393567,76393566,76393567,50,-,GCCCTCTGGGGAAGTGTTTGCTATGGAAATATGCAATTAATATTGCAGCG,Distal Intergenic,18,76321824,76322259,436,1,Gm50360-201,71743,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,10,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19670,cg14864399,0.00000323,0.00000189,1.706824178,0.088856111,gain,ns,0.00000491,0.00000322,1.525074728,0.12825999,pos,ns,0.003084057,0.000942754,3.271328293,0.001191094,pos,ns,2.924054031,-0.0000957,0.0000324,-2.950912035,0.003409944,neg,ns,0.954614207,Lin54,Lin54_threeUTR,5,100475698,100475747,100475698,100475699,50,+,CGATTTCAAAGGTGAGATGGCTATTTTATTTGGTGTCTGTGTTGTAGAAT,3' UTR,5,100441918,100500592,58675,2,Lin54-208,24845,Lin54-208;Lin54-204;Lin54-210;Lin54-201;Lin54-202;Lin54-206;Lin54-205;Lin54-209;Lin54-203,Lin54;Lin54;Lin54;Lin54;Lin54;Lin54;Lin54;Lin54;Lin54,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,5,231506,ENSMUSG00000035310,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20447,cg18352661,0.000168633,0.0000118,14.34178711,3.93E-36,gain,yes,-0.0000305,0.00002,-1.525050202,0.128266105,neg,ns,0.008651074,0.005852154,1.478271899,0.140350323,pos,ns,0.852786584,-0.000318819,0.000201255,-1.584155404,0.114177939,neg,ns,0.419845052,Hoxc4,Hoxc4_Intergenic_downstream,15,103038935,103038984,103038983,103038984,50,-,AGGTTCACGGGGAGGACACAGCATTTTCTCTCCCATTGCCTTTATATTCG,Downstream (2-3kb),15,103034395,103036852,2458,1,Hoxc4-201,4589,Hoxc4-202;Hoxc4-201,Hoxc4;Hoxc4,0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,32,91,15423,ENSMUSG00000075394,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
17795,cg14415460,-0.0000116,0.0000027,-4.305575522,0.0000224,loss,ns,-0.00000699,0.00000458,-1.525033713,0.128270217,neg,ns,0.005181436,0.001342726,3.858894163,0.000138597,pos,ns,3.858246379,-0.000132265,0.0000462,-2.864351099,0.004463824,neg,ns,0.953017234,Slc6a6,Slc6a6_Exon,6,91748354,91748403,91748402,91748403,50,-,ATCACATCCTTGGTTGATCTTTACCCATCCTTCCTAAGGAAGGGTTATCG,Promoter (<=1kb),6,91748356,91750170,1815,1,Slc6a6-203,0,Slc6a6-201;Slc6a6-205;Slc6a6-203;Slc6a6-211,Slc6a6;Slc6a6;Slc6a6;Slc6a6,0;23395;0;-1781,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,21366,ENSMUSG00000030096,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7730,cg05367476,0.00000177,0.00000154,1.147840128,0.251919586,gain,ns,0.00000398,0.00000261,1.524894738,0.128304876,pos,ns,0.001888387,0.000765601,2.466543649,0.014183052,pos,ns,1.848230302,-0.0000577,0.0000263,-2.189880751,0.029277812,neg,ns,0.96692171,Arhgap15,Arhgap15_Intron,2,43988030,43988079,43988030,43988031,50,+,CGGAAGGTAATTTAATAACCTTTTGCATGTACCTGGGGAATGCCTCTCCA,"Intron (Arhgap15-203/Arhgap15, intron 6 of 14)",2,43748824,44395953,647130,1,Arhgap15-203,239206,Arhgap15-203;Arhgap15-202;Arhgap15-201,Arhgap15;Arhgap15;Arhgap15,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,72,78,76117,ENSMUSG00000049744,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15255,cg06778417,-0.000053,0.00000709,-7.476911935,7.86E-13,loss,yes,0.0000184,0.0000121,1.524829084,0.128321251,pos,ns,-0.001175071,0.003531152,-0.33277281,0.73953071,neg,ns,0.131043787,-0.000221668,0.000121436,-1.825390385,0.068904197,neg,ns,0.849844411,Hhip,Hhip_Intron,8,80020812,80020861,80020812,80020813,50,+,CGACCACCCAAGAGGGCAGCAAAAATAAGTCACCTAGTGAAGGTGGTCTT,"Intron (Hhip-201/Hhip, intron 4 of 12)",8,79965853,80058006,92154,2,Hhip-201,37145,Hhip-201,Hhip,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,2,15245,ENSMUSG00000064325,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4805,cg08722258,-0.000000805,0.00000194,-0.41533888,0.678181168,loss,ns,0.00000502,0.00000329,1.524726893,0.128346744,pos,ns,0.001891806,0.000964106,1.962239212,0.050628941,pos,ns,1.295601156,-0.0000762,0.0000332,-2.298902534,0.022175335,neg,ns,0.956143138,Prkg1,Prkg1_Exon,19,30624696,30624745,30624696,30624697,50,-,CGAAACCTCCAACTCCAAGGGTATCAATGATGTTGAAATCAGACAGCTTC,"Exon (Prkg1-201/Prkg1, exon 10 of 18)",19,30564489,31765033,1200545,2,Prkg1-201,1140288,Prkg1-201;Prkg1-208;Prkg1-202;Prkg1-205,Prkg1;Prkg1;Prkg1;Prkg1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,13,19091,ENSMUSG00000052920,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2245,cg27643844,-0.00000451,0.00000288,-1.56653788,0.118242926,loss,ns,-0.00000745,0.00000489,-1.524700088,0.128353431,neg,ns,-0.000848629,0.001432105,-0.592574455,0.553897971,neg,ns,0.256570226,-0.0000294,0.0000492,-0.597298206,0.55074432,neg,ns,0.957783294,Gm30341,Gm30341_Promoter,3,18751758,18751807,18751758,18751759,50,+,CGAGTTGAGCCATGACAAATAGGGACAGCTGGCCTAATTGAATCATTTGA,Promoter (1-2kb),3,18753077,18753365,289,1,Gm30341-201,-1270,Gm30341-201,Gm30341,-1270,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,23,102632201,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2292,cg01992907,-0.0000633,0.0000114,-5.56313229,5.73E-08,loss,yes,0.0000295,0.0000193,1.524609797,0.128375959,pos,ns,-0.003337241,0.005667571,-0.588830867,0.556403543,neg,ns,0.254610114,-0.00012472,0.000194907,-0.639892186,0.522715318,neg,ns,0.769398142,Rorb,Rorb_Exon,19,18957253,18957302,18957301,18957302,50,+,CCATATTTTCCTTCAAACAGAACAGTGTTGTTTAATGGGTTGAAGGCACG,"Exon (Rorb-201/Rorb, exon 7 of 10)",19,18930605,19001117,70513,2,Rorb-201,43815,Rorb-201;Rorb-203;Rorb-202,Rorb;Rorb;Rorb,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,10,225998,ENSMUSG00000036192,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12778,cg21625173,-0.00000162,0.00000258,-0.629235632,0.529658223,loss,ns,0.00000669,0.00000439,1.524493432,0.128404997,pos,ns,0.002509378,0.001285247,1.952447855,0.051784883,pos,ns,1.285797001,-0.0000883,0.0000442,-1.998334212,0.046553584,neg,ns,0.945415544,Rsrc1,Rsrc1_Intron,3,67171258,67171307,67171258,67171259,50,-,CGATGTGCTGCATGAGGGGAAGGGAAACTCATGGTTCCCAGAAGATTTAA,"Intron (Rsrc1-206/Rsrc1, intron 4 of 9)",3,66981390,67356559,375170,1,Rsrc1-206,189868,Rsrc1-206;Rsrc1-203;Rsrc1-202;Rsrc1-201;Rsrc1-209;Rsrc1-205,Rsrc1;Rsrc1;Rsrc1;Rsrc1;Rsrc1;Rsrc1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,37,66880,ENSMUSG00000034544,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18359,cg03951543,0.000000189,0.00000247,0.076556543,0.939025716,gain,ns,-0.00000639,0.00000419,-1.524428074,0.128421309,neg,ns,-0.003028152,0.001228188,-2.46554461,0.014221884,neg,ns,1.847042875,0.0000876,0.0000422,2.07313836,0.038985238,pos,ns,0.049557346,Otp,Otp_Promoter,13,94871482,94871531,94871482,94871483,50,-,CGAATTAAAATTGATTCTTTTCATCAGGCAAGAAAATAGGAAAATGTGAG,Promoter (4-5kb),13,94875602,94885130,9529,1,Otp-201,-4120,Otp-201,Otp,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,27,34,18420,ENSMUSG00000021685,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
20038,cg02014645,-0.0000075,0.00000358,-2.098268575,0.036690467,loss,ns,0.00000926,0.00000608,1.524215124,0.128474467,pos,ns,0.004389341,0.001780081,2.465810098,0.014211555,pos,ns,1.847358391,-0.00011546,0.0000612,-1.886085217,0.060218126,neg,ns,0.135563744,Atxn7l3,Atxn7l3_Promoter,11,102296125,102296174,102296173,102296174,50,+,TGTCTCTATTGTCCCGGGGGCTGGGGCCTGGCTCCCTAACAAAGGCCCCG,Promoter (<=1kb),11,102289300,102296631,7332,2,Atxn7l3-201,457,Atxn7l3-206;Atxn7l3-205;Atxn7l3-204;Atxn7l3-203;Atxn7l3-201;Atxn7l3-202,Atxn7l3;Atxn7l3;Atxn7l3;Atxn7l3;Atxn7l3;Atxn7l3,0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,2,7,217218,ENSMUSG00000059995,conserved gene and region,11,102295922,102297391,1470,*,1470,186,0.771428571,0.854117206,0.126530612,1.10E-161,CpGisland,TRUE,U1,Pr-A
17561,cg14155777,-0.0000218,0.00000941,-2.317211905,0.021143418,loss,ns,0.0000244,0.000016,1.523920118,0.128548138,pos,ns,-0.003549765,0.004684783,-0.757722369,0.449192799,neg,ns,0.347567214,0.000178957,0.000161109,1.110782729,0.267522685,pos,ns,0.606352214,Chd9,Chd9_Exon,8,91008744,91008793,91008744,91008745,50,+,CGGACAGATATTTCTTTAGATGATCCCAACTTCTGGCAAAAATGGGCTAA,"Exon (Chd9-201/Chd9, exon 21 of 40)",8,90828352,91054516,226165,1,Chd9-201,180392,Chd9-201;Chd9-202;Chd9-203;Chd9-205;Chd9-210,Chd9;Chd9;Chd9;Chd9;Chd9,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,5,109151,ENSMUSG00000056608,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21529,cg13043042,-0.0000099,0.0000072,-1.373955874,0.170448001,loss,ns,0.0000187,0.0000122,1.523783935,0.128582157,pos,ns,0.0098833,0.003585811,2.756224658,0.006193535,pos,ns,2.208061438,-0.000394663,0.000123316,-3.20042701,0.001514444,neg,ns,0.754530229,Bsn,Bsn_Exon,9,108108178,108108227,108108178,108108179,50,+,CGCCGACACCTGAGACAGAGGGAAGGGTGGGCAGCACTGAGACCCAAGGT,"Exon (Bsn-201/Bsn, exon 6 of 12)",9,108096022,108190384,94363,2,Bsn-201,82157,Bsn-201;Bsn-202,Bsn;Bsn,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,8,12217,ENSMUSG00000032589,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10996,cg23345501,-0.0000433,0.0000087,-4.976250665,0.00000108,loss,yes,-0.0000225,0.0000148,-1.523548855,0.128640899,neg,ns,-0.000723454,0.004331054,-0.167038796,0.867448428,neg,ns,0.061756336,-0.000612326,0.000148945,-4.111101257,0.0000505,neg,ns,0.633536908,Gm50135,Gm50135_Intergenic_downstream,19,56105641,56105690,56105641,56105642,50,-,CGACCTGCTGATTTACCAAAGTATGATCAACTCACACAAATTATAGGCGT,Distal Intergenic,19,56012529,56012925,397,1,Gm50135-201,93161,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,7,,NA,mapped to different genes,19,56105391,56105642,252,*,252,13,0.55952381,0.671311475,0.051587302,0.000000938,CpGisland,TRUE,U15,NS
12181,cg12069228,-0.00000217,0.00000364,-0.594298909,0.552745669,loss,ns,0.00000943,0.00000619,1.523535054,0.128644348,pos,ns,0.003680576,0.001814121,2.028848126,0.043328133,pos,ns,1.363230028,-0.000131296,0.0000624,-2.10452448,0.036137521,neg,ns,0.912462155,Map2k5,Map2k5_Intron,9,63238668,63238717,63238716,63238717,50,+,AGCTTTAATGTCCTTTTTAATTTTGCCTGTTTCTGTATCACTAGGGGTCG,"Intron (Map2k5-201/Map2k5, intron 16 of 21)",9,63163768,63377902,214135,2,Map2k5-201,139185,Map2k5-201;Map2k5-202,Map2k5;Map2k5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,34,37,23938,ENSMUSG00000058444,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5259,cg26844246,0.000220574,0.0000169,13.0406759,2.75E-31,gain,yes,-0.0000438,0.0000287,-1.52334257,0.128692462,neg,ns,0.007710099,0.008418425,0.915859993,0.360452218,pos,ns,0.443152298,0.0000939,0.000289509,0.324300729,0.745929077,pos,ns,0.10460044,Tlx3,Tlx3_fiveUTR,11,33203551,33203600,33203551,33203552,50,+,CGCACTGAAACTTTGCCAAGAGTGCGCGGGCCCGACAGGCTCTGTGTCAT,Promoter (<=1kb),11,33200752,33203589,2838,2,Tlx3-201,0,Tlx3-201,Tlx3,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,20,27140,ENSMUSG00000040610,conserved gene and region,11,33202715,33203697,983,*,983,96,0.695829095,0.806819251,0.097660224,1.02E-71,CpGisland,TRUE,NA,NRS
26369,cg09628017,0.0000374,0.0000154,2.423834946,0.015929545,gain,ns,-0.0000399,0.0000262,-1.523041006,0.12876787,neg,ns,-0.021552799,0.007675642,-2.807947463,0.005301977,neg,ns,2.275562167,0.000753201,0.000263965,2.853417224,0.004616204,pos,ns,0.709456878,Nkx2-2,Nkx2-2_Intron,2,147180744,147180793,147180792,147180793,50,-,TTTTTAATGCGTCTTCCTTTCACAGACAACAATACAGGGTTTGAAAGCCG,"Intron (Nkx2-2-203/Nkx2-2, intron 2 of 2)",2,147177546,147186101,8556,2,Nkx2-2-203,5308,Nkx2-2-203;Nkx2-2-201,Nkx2-2;Nkx2-2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,30,18088,ENSMUSG00000027434,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
9192,cg09619409,-0.00000108,0.00000108,-1.00219977,0.317028753,loss,ns,0.00000278,0.00000183,1.523035209,0.12876932,pos,ns,0.001620318,0.000535625,3.025097135,0.002693537,pos,ns,2.569677079,-0.000048,0.0000184,-2.604871403,0.00963392,neg,ns,0.9706996,Cul1,Cul1_Exon,6,47502472,47502521,47502472,47502473,50,-,CGTTAACAGTGTATAAAGAATCCTTTGAATCTCAATTTTTGGCTGACACA,"Exon (Cul1-204/Cul1, exon 7 of 20)",6,47453904,47523766,69863,1,Cul1-204,48568,Cul1-204;Cul1-201,Cul1;Cul1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,26965,ENSMUSG00000029686,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24252,cg14720564,-0.0000215,0.00000662,-3.240504625,0.00132287,loss,ns,0.0000171,0.0000112,1.522969007,0.12878588,pos,ns,-0.000805602,0.003294702,-0.244514404,0.806994209,neg,ns,0.093129582,-0.00000406,0.000113305,-0.035819157,0.971449611,neg,ns,0.622222711,Pou3f1,Pou3f1_Intergenic_upstream,4,124346560,124346609,124346560,124346561,50,-,CGGCTGCGAATACAGGTATTGGTTTGACTTTAATAAAAGTCATAACTGAT,Distal Intergenic,4,124656807,124660655,3849,1,Pou3f1-201,-310247,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,24,85,18991,ENSMUSG00000090125,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8582,cg01051527,0.00000295,0.00000164,1.798485396,0.073072825,gain,ns,-0.00000424,0.00000279,-1.522830155,0.128820616,neg,ns,0.001401896,0.00081621,1.717568256,0.086874046,pos,ns,1.061109953,-0.0000446,0.0000281,-1.588076453,0.113288429,neg,ns,0.968684793,Snrnp70,Snrnp70_Exon,7,45383168,45383217,45383216,45383217,50,-,AGCCAGCTGCGTGGTGGCTGCAGTGACAATAAGAACAGTCAATTAATACG,"Exon (Snrnp70-216/Snrnp70, exon 8 of 10)",7,45376453,45395742,19290,2,Snrnp70-201,12525,Snrnp70-201;Snrnp70-207;Snrnp70-216;Snrnp70-215;Snrnp70-214;Snrnp70-204;Snrnp70-209;Snrnp70-213;Snrnp70-206;Snrnp70-205;Snrnp70-217;Snrnp70-203;Snrnp70-202;Snrnp70-212;Snrnp70-211,Snrnp70;Snrnp70;Snrnp70;Snrnp70;Snrnp70;Snrnp70;Snrnp70;Snrnp70;Snrnp70;Snrnp70;Snrnp70;Snrnp70;Snrnp70;Snrnp70;Snrnp70,0;0;0;0;0;0;-1851;0;11582;4553;11955;11977;11502;12492;9561,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,8,20637,ENSMUSG00000063511,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19237,cg25920878,0.00000976,0.00000657,1.48598728,0.138298744,gain,ns,-0.000017,0.0000112,-1.522795703,0.128829236,neg,ns,-0.011428651,0.003268457,-3.496650488,0.000539959,neg,ns,3.267639564,0.0002057,0.000112402,1.830039098,0.068204215,pos,ns,0.885111452,Gm18148,Gm18148_Intergenic_upstream,14,98819916,98819965,98819964,98819965,50,+,CCCTTTATTTCATCTCTGACATTCATTGTAAATTTAATGATCCACATACG,Distal Intergenic,14,98922654,98923527,874,1,Gm18148-201,-102689,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,9,100416529,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14444,cg22821471,0.00000185,0.00000352,0.526706383,0.598774169,gain,ns,0.0000091,0.00000598,1.522776073,0.128834148,pos,ns,0.005891908,0.001750643,3.365567142,0.000859962,pos,ns,3.065520541,-0.00019586,0.0000602,-3.25324877,0.001266828,neg,ns,0.91417344,Crk,Crk_threeUTR,11,75703340,75703389,75703388,75703389,50,-,GTGCTCTCCTTATTCTCCTCCTGCAGGTCGGTGAGCTGGTAAAGGTTACG,3' UTR,11,75679259,75706065,26807,1,Crk-201,24081,Crk-201;Crk-204;Crk-203;Crk-202;Crk-205,Crk;Crk;Crk;Crk;Crk,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,7,12928,ENSMUSG00000017776,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1533,cg07585458,0.0000563,0.0000136,4.134950366,0.0000458,gain,ns,-0.0000352,0.0000231,-1.522613531,0.128874823,neg,ns,0.013393638,0.006779123,1.975718425,0.049073218,pos,ns,1.309155461,-0.000240419,0.000233133,-1.031252477,0.303226324,neg,ns,0.287644413,Gm11826,Gm11826_Intergenic_downstream,4,13469526,13469575,13469574,13469575,50,-,TATTAATGTTATCAGACACATGAAATATGTCTGATGGATTTATTCTGCCG,Distal Intergenic,4,13482755,13483192,438,2,Gm11826-201,13666,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,6,100039988,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3674,cg11113438,0.0000665,0.00000869,7.654108826,2.49E-13,gain,yes,0.0000225,0.0000148,1.522592133,0.128880178,pos,ns,0.016105838,0.004325115,3.72379432,0.000233075,pos,ns,3.632503379,-0.000247004,0.00014874,-1.660636291,0.09779757,neg,ns,0.219816184,Gm18377,Gm18377_Intron,9,24974438,24974487,24974438,24974439,50,-,CGGCCTGTGACGCTTGCCAGCACCTGCAGATAGCAGGCAAATAATTGGCA,"Intron (E130101E03Rik-201/E130101E03Rik-201, intron 1 of 4)",9,24957580,24958186,607,2,Gm18377-201,-16301,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,2,100417037,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
6077,cg19761677,0.0000145,0.00000462,3.128833573,0.001921858,gain,ns,0.000012,0.00000785,1.522490263,0.128905677,pos,ns,0.002146533,0.002300779,0.932958985,0.351567213,pos,ns,0.453991634,-0.0000431,0.0000791,-0.544385328,0.586567694,neg,ns,0.104712267,Psd2,Psd2_Intergenic_upstream,18,35938773,35938822,35938773,35938774,50,+,CGAGCCTGGCAGCCCCTCCCGGCCCAGCAGCCAGCAAGCTGGGCCAGGAG,Distal Intergenic,18,35964830,36014712,49883,1,Psd2-201,-26008,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,24,29,74002,ENSMUSG00000024347,mapped to different genes,18,35938492,35938793,302,*,302,33,0.751655629,0.779080675,0.109271523,9.13E-27,CpGisland,TRUE,U3,Pr-B
268,cg18662251,0.00000639,0.0000135,0.473939754,0.635876492,gain,ns,0.0000348,0.0000229,1.522394057,0.128929762,pos,ns,0.017393459,0.006705589,2.59387507,0.009940626,pos,ns,2.002586284,-0.000658,0.000230605,-2.853368346,0.004616896,neg,ns,0.327430455,Npas4,Npas4_threeUTR,19,4984337,4984386,4984337,4984338,50,-,CGCATGACACCAGAGGTACCAAAAAGGCAAACTGGACTTTATTATAAAGT,3' UTR,19,4984355,4989971,5617,2,Npas4-202,5585,Npas4-202;Npas4-201;Npas4-203,Npas4;Npas4;Npas4,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,14,16,225872,ENSMUSG00000045903,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25920,cg07834314,0.00000172,0.00000155,1.105190405,0.269934106,gain,ns,-0.00000402,0.00000264,-1.522310301,0.128950732,neg,ns,-0.001437555,0.000773867,-1.857624942,0.064170362,neg,ns,1.192665511,0.0000523,0.0000266,1.965941918,0.050197506,pos,ns,0.975423239,Amz1,Amz1_threeUTR,5,140760841,140760890,140760889,140760890,50,+,AGCTTGTTGTTGACGATGGTCTCGAAGATGTTCATGGACTCCACCAGCCG,3' UTR,5,140749283,140761439,12157,1,Amz1-206,11558,Amz1-206;Gna12-201;Gna12-202,Amz1;Gna12;Gna12,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,4,231842,ENSMUSG00000050022,conserved gene but different region,5,140760830,140761062,233,*,233,13,0.52360515,0.814247312,0.055793991,0.000000389,CpGisland,TRUE,U10,Tr-S
13808,cg22671264,0.00000266,0.00000174,1.528490672,0.127410451,gain,ns,0.0000045,0.00000296,1.522269462,0.128960958,pos,ns,0.000643016,0.00086611,0.742418264,0.458396123,pos,ns,0.338759065,-0.0000237,0.0000298,-0.795584363,0.426882411,neg,ns,0.956139941,Slain2,Slain2_Exon,5,72957535,72957584,72957535,72957536,50,+,CGGGGAATAGAATATAGTAGAGTGTCCCCACAGCCTATGATTAGCCGCTT,"Exon (Slain2-202/Slain2, exon 5 of 8)",5,72914304,72978829,64526,1,Slain2-202,43231,Slain2-202;Slain2-201;Slain2-205;Slain2-203,Slain2;Slain2;Slain2;Slain2,0;0;42867;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,75991,ENSMUSG00000036087,conserved gene and region,5,72957469,72957633,165,*,165,11,0.557575758,0.93220339,0.066666667,0.000000724,CpGisland,TRUE,NA,NRS
19151,cg23101259,-0.0000057,0.00000147,-3.884186549,0.000125537,loss,ns,0.0000038,0.00000249,1.522266073,0.128961807,pos,ns,0.000224829,0.000730692,0.307693362,0.758522292,pos,ns,0.120031651,0.0000206,0.0000251,0.818015638,0.413976563,pos,ns,0.045078498,Emsy,Emsy_fiveUTR,7,98656501,98656550,98656549,98656550,50,-,AAGGCTCCTCCGCCAAGACTAGGGGACACCAGGAATTGGGTTTGTTTGCG,Promoter (<=1kb),7,98588936,98656546,67611,2,Emsy-207,0,Emsy-202;Emsy-207;Emsy-201;Emsy-211;Emsy-210;Emsy-209,Emsy;Emsy;Emsy;Emsy;Emsy;Emsy,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,16,233545,ENSMUSG00000035401,conserved gene and region,7,98656479,98656653,175,*,175,16,0.611428571,0.988700565,0.091428571,6.88E-12,CpGisland,TRUE,U1,Pr-A
21837,cg19128459,0.0000726,0.00000853,8.508690604,7.63E-16,gain,yes,-0.0000221,0.0000145,-1.522235337,0.128969503,neg,ns,-0.003970683,0.004245787,-0.935205557,0.350410294,neg,ns,0.455423144,-0.0000903,0.000146012,-0.618534011,0.536677591,neg,ns,0.604664311,Lmo1,Lmo1_Intergenic_upstream,7,109234924,109234973,109234972,109234973,50,+,AAAGAGTTCTAACCAAGTCCTGCTGGATTTAAATAGCAAGATCTGCCTCG,Distal Intergenic,7,109138675,109175207,36533,2,Lmo1-202,-59717,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,34,66,109594,ENSMUSG00000036111,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14325,cg20090258,0.000031,0.00000879,3.532807995,0.000473717,gain,ns,-0.0000227,0.0000149,-1.522004005,0.129027444,neg,ns,0.00657377,0.004373858,1.502968364,0.1338652,pos,ns,0.873332309,-0.000529252,0.000150417,-3.518576374,0.000498824,neg,ns,0.120898493,Hic1,Hic1_Exon,11,75165500,75165549,75165548,75165549,50,+,CAGCGGGTAGAGGCTCTCCAGCGCCACCTTGGGGTCGTGCAGGAAGTGCG,"Exon (Hic1-201/Hic1, exon 2 of 2)",11,75164565,75169519,4955,2,Hic1-201,3970,Hic1-201;Hic1-202;Smg6-201;Smg6-202;Smg6-206,Hic1;Hic1;Smg6;Smg6;Smg6,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,10,15248,ENSMUSG00000043099,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
17650,cg14741939,0.0000627,0.00000503,12.45673552,3.74E-29,gain,yes,0.000013,0.00000854,1.521997409,0.129029096,pos,ns,0.006085707,0.002503283,2.431090231,0.015620079,pos,ns,1.806316778,0.0000827,0.0000861,0.961049234,0.337276411,pos,ns,0.100727719,Zic1,Zic1_fiveUTR,9,91365765,91365814,91365813,91365814,50,+,TGATAGCAGCAATCATTCCTGCAGATAAATGAATTGAAAGGACGACACCG,Promoter (<=1kb),9,91358058,91365768,7711,2,Zic1-201,0,Zic1-201;Zic1-202;Zic1-203;Zic4-208;Zic4-206;Zic4-207;Zic4-211;Zic4-204;Zic4-203,Zic1;Zic1;Zic1;Zic4;Zic4;Zic4;Zic4;Zic4;Zic4,0;0;-2711;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,10,22771,ENSMUSG00000032368,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
14654,cg21695859,-0.00000108,0.000000792,-1.361614733,0.174308246,loss,ns,0.00000205,0.00000134,1.521988726,0.129031272,pos,ns,0.000351296,0.000393995,0.891625028,0.37328548,pos,ns,0.427958903,-0.0000163,0.0000135,-1.201515067,0.230468583,neg,ns,0.97591876,Rbfox2,Rbfox2_Exon,15,77097924,77097973,77097972,77097973,50,+,GGAATCTAACGCTTACCCTGGATAGGCGGGGATGGCTGTTGGAGGTACCG,"Exon (Rbfox2-204/Rbfox2, exon 10 of 14)",15,77078990,77306928,227939,2,Rbfox2-204,208955,Rbfox2-204;Rbfox2-203;Rbfox2-202;Rbfox2-206;Rbfox2-208;Rbfox2-209;Rbfox2-201;Rbfox2-207;Rbfox2-212;Rbfox2-213,Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,20,93686,ENSMUSG00000033565,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2578,cg27537626,0.0000117,0.00000746,1.571121318,0.117174544,gain,ns,0.0000193,0.0000127,1.521791945,0.129080575,pos,ns,0.002408867,0.003713063,0.648754666,0.516977263,pos,ns,0.286528557,0.0000886,0.000127692,0.693553599,0.48848153,pos,ns,0.890568883,Rbm10,Rbm10_Intron,X,20641126,20641175,20641126,20641127,50,+,CGTGTGTCCAAAGCTGTTGACTAACCCACTGCGTCTGTATCTGAATGCTG,"Intron (Rbm10-205/Rbm10, intron 5 of 23)",20,20617503,20650888,33386,1,Rbm10-205,23623,Rbm10-205;Rbm10-204;Rbm10-203;Rbm10-206;Rbm10-201;Rbm10-202;Rbm10-207,Rbm10;Rbm10;Rbm10;Rbm10;Rbm10;Rbm10;Rbm10,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,14,236732,ENSMUSG00000031060,conserved gene and region,X,20641104,20641268,165,*,165,11,0.56969697,0.821638751,0.066666667,0.000000724,CpGisland,TRUE,U10,Tr-S
24586,cg24462704,-0.00000253,0.00000762,-0.331623084,0.740397967,loss,ns,0.0000197,0.0000129,1.521739996,0.129093594,pos,ns,0.006819384,0.003790509,1.79906795,0.072980417,pos,ns,1.13679366,-0.000215542,0.000130355,-1.653493099,0.099242801,neg,ns,0.880875657,Sfpq,Sfpq_Exon,4,127029807,127029856,127029855,127029856,50,+,GTTAATTACTGTTCCAATAGCGTACTGAGCGCTTTGGGCAGGGAGGTGCG,"Exon (Sfpq-201/Sfpq, exon 10 of 10)",4,127021324,127031236,9913,1,Sfpq-201,8483,Sfpq-201;Sfpq-203;Sfpq-206;Sfpq-205;Sfpq-204;Sfpq-202,Sfpq;Sfpq;Sfpq;Sfpq;Sfpq;Sfpq,0;6424;0;3883;3851;3362,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,12,71514,ENSMUSG00000028820,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2549,cg22309804,0.000000681,0.000000887,0.768196936,0.442954974,gain,ns,0.00000229,0.00000151,1.5217006,0.129103467,pos,ns,0.001071935,0.000441379,2.428604399,0.015725505,pos,ns,1.80339539,-0.00000569,0.0000152,-0.375137747,0.707814554,neg,ns,0.970873958,Ppp3cb,Ppp3cb_threeUTR,14,20500125,20500174,20500173,20500174,50,+,GAGACCATACAGGGTGCACTTTCTGGCAAACAAAACAATAGATGGTTCCG,3' UTR,14,20499364,20546573,47210,2,Ppp3cb-202,46399,Mss51-201;Ppp3cb-202;Ppp3cb-205;Ppp3cb-201;Ppp3cb-208,Mss51;Ppp3cb;Ppp3cb;Ppp3cb;Ppp3cb,-3224;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,10,19056,ENSMUSG00000021816,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3334,cg24949915,-0.00000447,0.00000419,-1.068159946,0.286279448,loss,ns,-0.0000108,0.00000711,-1.521575018,0.129134944,neg,ns,-0.001908837,0.002083705,-0.916078419,0.360337833,neg,ns,0.443290137,-0.0000253,0.0000717,-0.353613735,0.723868744,neg,ns,0.910381324,Gm11890,Gm11890_Intergenic_downstream,4,23628912,23628961,23628960,23628961,50,+,ATAAGGTAAATAATAGTAAGAGGCTCTCTGACACTCCACATCAAGTTCCG,Distal Intergenic,4,23659928,23660344,417,2,Gm11890-201,31383,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,32,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11233,cg11829527,0.000115521,0.0000203,5.697064836,2.83E-08,gain,yes,0.0000524,0.0000344,1.521432161,0.129170758,pos,ns,0.015672797,0.010092244,1.552954632,0.121454258,pos,ns,0.915587253,-0.0000792,0.000347071,-0.22811206,0.819709513,neg,ns,0.580560991,Nr4a2,Nr4a2_Exon,2,57108675,57108724,57108675,57108676,50,+,CGCATTGCAACCTGTGCAAGACCACCCCATTGCAAAAGATGAGTTTACCC,"Exon (Nr4a2-201/Nr4a2, exon 7 of 8)",2,57106830,57115038,8209,2,Nr4a2-201,6314,Nr4a2-201;Nr4a2-203;Nr4a2-206;Nr4a2-202;Nr4a2-205;Nr4a2-204,Nr4a2;Nr4a2;Nr4a2;Nr4a2;Nr4a2;Nr4a2,0;0;0;0;0;5649,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,25,18227,ENSMUSG00000026826,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
5128,cg17687782,-0.0000126,0.00000946,-1.326368477,0.185694,loss,ns,0.0000245,0.0000161,1.521342671,0.129193197,pos,ns,0.003300983,0.004710349,0.700793649,0.483957467,pos,ns,0.315192805,-0.00011692,0.000161989,-0.721779519,0.4709741,neg,ns,0.590208961,Fli1,Fli1_Exon,9,32424199,32424248,32424199,32424200,50,+,CGTCATTTTGAACTCCCCGTTGGTCCCCTCCCAGGTGATACAGCTGGCGT,"Exon (Fli1-201/Fli1, exon 9 of 9)",9,32422204,32541595,119392,2,Fli1-201,117347,Fli1-201;Fli1-202,Fli1;Fli1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,15,14247,ENSMUSG00000016087,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9834,cg10880028,0.000103231,0.0000156,6.600845271,1.77E-10,gain,yes,-0.0000404,0.0000266,-1.521229423,0.129221597,neg,ns,0.014406532,0.007783741,1.850849259,0.065142359,pos,ns,1.186136517,-0.000346304,0.000267682,-1.29371369,0.196727411,neg,ns,0.395816529,Sim1,Sim1_Intergenic_downstream,10,51024087,51024136,51024135,51024136,50,-,TGCTTGTGTACTTAGACTCCACTTATTTTGTTCAGGTTCACGATCAGGCG,Distal Intergenic,10,50895651,50989152,93502,1,Sim1-201,128485,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,8,20464,ENSMUSG00000019913,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9200,cg06739620,-0.0000194,0.00000528,-3.682544717,0.000272351,loss,ns,-0.0000136,0.00000897,-1.521081801,0.129258625,neg,ns,-0.008277505,0.00262869,-3.14890845,0.001798446,neg,ns,2.745102715,0.000203195,0.0000904,2.247725976,0.025296434,pos,ns,0.902544469,Cul1,Cul1_Exon,6,47524518,47524567,47524518,47524519,50,-,CGGCCATCGTGAGAATCATGAAGATGAGGAAGGTTCTGAAACACCAGCAG,"Exon (Cul1-201/Cul1, exon 21 of 22)",6,47454320,47526139,71820,1,Cul1-201,70198,Cul1-204;Cul1-201;Cul1-202;Cul1-207;Cul1-209;Cul1-206,Cul1;Cul1;Cul1;Cul1;Cul1;Cul1,0;0;0;7526;4822;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,26965,ENSMUSG00000029686,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26395,cg26440026,0.00000787,0.00000235,3.34063283,0.000938043,gain,ns,-0.00000608,0.000004,-1.52093438,0.129295612,neg,ns,0.002827799,0.001171927,2.412947372,0.016404107,pos,ns,1.785047401,-0.0000665,0.0000403,-1.65045411,0.099862828,neg,ns,0.062521321,Nkx2-2,Nkx2-2_Intron,2,147190793,147190842,147190841,147190842,50,-,TGTACACAGGCTAAGTGGCCCCACTCCAGGACAAGTGGCCCTCTAAGTCG,"Intron (Nkx2-2os-201/Nkx2-2os-201, intron 1 of 5)",2,147186305,147194243,7939,2,Nkx2-2-202,3401,Nkx2-2-203;Nkx2-2-201;Nkx2-2-202;Nkx2-2-204,Nkx2-2;Nkx2-2;Nkx2-2;Nkx2-2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,30,18088,ENSMUSG00000027434,conserved gene but different region,2,147190841,147190971,131,*,131,9,0.580152672,0.825630252,0.06870229,0.00000851,CpGisland,TRUE,U13,Hc-P
11324,cg02218535,-0.00000592,0.00000449,-1.31815808,0.188423885,loss,ns,0.0000116,0.00000763,1.520923219,0.129298412,pos,ns,0.000525746,0.002234174,0.23532029,0.814115522,pos,ns,0.089313965,-0.0000513,0.0000768,-0.66740923,0.505007281,neg,ns,0.571905675,Gm13532,Gm13532_Intergenic_downstream,2,57614550,57614599,57614598,57614599,50,+,TAGTCATTTCTTCTCCATAAGCATATTTACTCGGATCTCTTGTTCCTACG,Distal Intergenic,2,57628989,57629228,240,2,Gm13532-201,14629,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,6,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26585,cg27419342,0.00000108,0.00000151,0.714367993,0.475537216,gain,ns,-0.00000389,0.00000256,-1.520545888,0.129393118,neg,ns,-0.001298724,0.000749374,-1.733079498,0.084075953,neg,ns,1.075328201,0.0000648,0.0000258,2.514043709,0.012441927,pos,ns,0.986086975,Casz1,Casz1_Exon,4,148938604,148938653,148938604,148938605,50,+,CGAGGGCTGCGTGTACAGCAAGGCTACCAACCACTTCCACTGCATCCGCG,"Exon (Casz1-201/Casz1, exon 11 of 16)",4,148804429,148945129,140701,1,Casz1-201,134175,Casz1-201;Casz1-202;Casz1-204,Casz1;Casz1;Casz1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10651,cg09267036,-0.0000236,0.00000441,-5.362226667,0.000000161,loss,yes,-0.0000114,0.00000749,-1.52005448,0.129516538,neg,ns,-0.006277058,0.002193403,-2.861789695,0.004499104,neg,ns,2.346873957,0.00019162,0.0000754,2.540331796,0.011562441,pos,ns,0.932590445,Cfl2,Cfl2_Exon,12,54861521,54861570,54861569,54861570,50,+,CACACCAGAATATAAATACTAGGTCTTCTTTCTTAGACTCTTTTGTTTCG,"Exon (Cfl2-201/Cfl2, exon 2 of 4)",12,54858809,54862798,3990,2,Cfl2-206,1228,Cfl2-206;Cfl2-201;Cfl2-203;Cfl2-205;Cfl2-202;Cfl2-204,Cfl2;Cfl2;Cfl2;Cfl2;Cfl2;Cfl2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,3,12632,ENSMUSG00000062929,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5185,cg13320676,-0.00000519,0.0000111,-0.467434558,0.640517405,loss,ns,-0.0000287,0.0000189,-1.519945385,0.129543951,neg,ns,-0.002610102,0.005524933,-0.47242236,0.63695775,neg,ns,0.195889374,-0.000209162,0.000190002,-1.100842803,0.271819122,neg,ns,0.793130332,Prrxl1,Prrxl1_threeUTR,14,32630534,32630583,32630534,32630535,50,-,CGTATTTCCTCCAGAAAGGTACATAAATAAGTGAACTGTTGAGCAAATTA,3' UTR,14,32599407,32649204,49798,1,Prrxl1-203,31127,Prrxl1-203;Prrxl1-204;Prrxl1-202;Prrxl1-201;Prrxl1-205,Prrxl1;Prrxl1;Prrxl1;Prrxl1;Prrxl1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,TRUE,FALSE,threeUTR,3,23,107751,ENSMUSG00000041730,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21912,cg02135464,-0.000000211,0.000000496,-0.425940624,0.670446691,loss,ns,0.00000128,0.000000843,1.519874385,0.129561793,pos,ns,0.00015607,0.000246827,0.632306406,0.527652747,pos,ns,0.277651796,-0.00000531,0.00000849,-0.625942338,0.531813344,neg,ns,0.988506903,Rtl1,Rtl1_Exon,12,109710186,109710235,109710234,109710235,50,-,GAGATAGTAGACCGTATAGCGTACGCTTTATCTGTGACGTATGTAACACG,"Exon (Mir411-201/Mir411-201, exon 1 of 1)",12,109589193,109600330,11138,2,Rtl1-201,-109905,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,9,353326,ENSMUSG00000085925,mapped to different genes,12,109710141,109710303,163,*,163,11,0.539877301,0.926614987,0.067484663,0.000000642,CpGisland,TRUE,U11,Tr-P
26972,cg25444005,0.0000115,0.00000354,3.247146482,0.001293382,gain,ns,-0.00000913,0.00000601,-1.519869125,0.129563115,neg,ns,-0.000244944,0.001760685,-0.139118634,0.889446737,neg,ns,0.050880054,0.000071,0.0000605,1.173396424,0.24153763,pos,ns,0.919044369,Acbd6,Acbd6_Intron,1,155636818,155636867,155636818,155636819,50,-,CGGTCTGGGAGAACAAAAGTCTTTTGCTAGGACCAGGCAGATCAATAGCA,"Intron (Acbd6-201/Acbd6, intron 6 of 7)",1,155558122,155691330,133209,1,Acbd6-201,78696,Acbd6-201;Acbd6-206,Acbd6;Acbd6,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,7,72482,ENSMUSG00000033701,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23895,cg03532626,-0.00000495,0.0000016,-3.09985427,0.002113835,loss,ns,-0.00000412,0.00000271,-1.519866088,0.129563879,neg,ns,-0.00140305,0.000794035,-1.766986886,0.078214342,neg,ns,1.106713603,0.0000225,0.0000273,0.823581677,0.410810432,pos,ns,0.955541951,Ctnnb1,Ctnnb1_threeUTR,9,120951339,120951388,120951339,120951340,50,+,CGTTCTCCTCAGATGGTGTCTGCTATTGTACGTACCATGCAGAATACAAA,3' UTR,9,120933400,120960507,27108,1,Ctnnb1-201,17939,Ctnnb1-203;Ctnnb1-201;Ctnnb1-208;Ctnnb1-209;Ctnnb1-214;Ctnnb1-204;Ctnnb1-207;Ctnnb1-211;Ctnnb1-213;Ctnnb1-202;Ctnnb1-210;Ctnnb1-212;Ctnnb1-205;Ulk4-210,Ctnnb1;Ctnnb1;Ctnnb1;Ctnnb1;Ctnnb1;Ctnnb1;Ctnnb1;Ctnnb1;Ctnnb1;Ctnnb1;Ctnnb1;Ctnnb1;Ctnnb1;Ulk4,0;0;0;0;0;0;17521;0;0;-3737;-3909;-4069;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,9,12387,ENSMUSG00000006932,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18287,cg00038376,-0.000000761,0.00000289,-0.263532473,0.792315282,loss,ns,0.00000746,0.00000491,1.519735183,0.129596781,pos,ns,0.002029758,0.001437143,1.412355999,0.158848248,pos,ns,0.799017572,-0.0000545,0.0000494,-1.102133166,0.271258709,neg,ns,0.924415905,Gm48316,Gm48316_Intergenic_upstream,13,94685382,94685431,94685382,94685383,50,+,CGCTTCTCTGACTCCAATCATTCATCATGCTCAATGAGGCAGCAAATAGG,Distal Intergenic,13,94752270,94752593,324,1,Gm48316-201,-66839,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,36,42,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10006,cg23133047,0.00000123,0.00000367,0.336350616,0.736834047,gain,ns,-0.00000947,0.00000623,-1.519662442,0.129615067,neg,ns,0.0000726,0.00182631,0.039733575,0.96833111,pos,ns,0.013976115,-0.0000691,0.0000628,-1.100767481,0.271851859,neg,ns,0.497207117,Hectd1,Hectd1_Exon,12,51827351,51827400,51827351,51827352,50,-,CGTTTCAAAACAACGATCCACGTTGTCAGACATCAAAAGCAGCATGCATA,"Exon (Hectd1-201/Hectd1, exon 2 of 43)",12,51743722,51829536,85815,2,Hectd1-201,2136,Hectd1-201;Hectd1-202;Hectd1-203,Hectd1;Hectd1;Hectd1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,19,19,207304,ENSMUSG00000035247,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20964,cg12233827,0.00000072,0.00000319,0.225770597,0.821528621,gain,ns,0.00000823,0.00000542,1.51941709,0.12967676,pos,ns,0.004562165,0.001587598,2.873628097,0.004338141,pos,ns,2.362696299,-0.000173681,0.0000546,-3.181123608,0.001615604,neg,ns,0.935749193,Zfp326,Zfp326_Exon,5,105888407,105888456,105888455,105888456,50,+,TTTTCCCTCACTGTGCAACTTTTCCAGGTTTGGACCTTATGAGTCTTACG,"Exon (Zfp326-201/Zfp326, exon 5 of 12)",5,105876565,105914780,38216,1,Zfp326-209,11842,Zfp326-209;Zfp326-208;Zfp326-201;Zfp326-205;Zfp326-206;Zfp326-202;Zfp326-203;Zfp326-204,Zfp326;Zfp326;Zfp326;Zfp326;Zfp326;Zfp326;Zfp326;Zfp326,0;0;0;0;0;11466;0;-2488,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,11,54367,ENSMUSG00000029290,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7963,cg09168055,0.00000654,0.00000967,0.676169512,0.499437171,gain,ns,-0.0000249,0.0000164,-1.518732484,0.129849022,neg,ns,-0.016371987,0.00481112,-3.402947149,0.000754181,neg,ns,3.122524653,0.000385754,0.000165454,2.331486687,0.020368297,pos,ns,0.134254662,Pax2,Pax2_Intergenic_upstream,19,44671052,44671101,44671052,44671053,50,+,CGGCTGATGCCTTCCCGCCCACGTGACTGCTGCCACAGTAAATTCAAATC,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-84944,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
3519,cg17985457,0.00000396,0.00000488,0.812024568,0.417400627,gain,ns,-0.0000126,0.00000829,-1.518643494,0.129871426,neg,ns,-0.002871978,0.002430107,-1.181831898,0.238178183,neg,ns,0.623098022,-0.0000608,0.0000836,-0.727780276,0.467297421,neg,ns,0.903521381,Bcl11a,Bcl11a_Intergenic_downstream,11,24313141,24313190,24313141,24313142,50,+,CGCTGGCACAGAGAACACAATTATGCACAGCCTTGAAAAATTGTATCATA,Distal Intergenic,11,24142379,24163291,20913,1,Bcl11a-206,170762,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,15,98,14025,ENSMUSG00000000861,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23483,cg19202923,-0.0000361,0.00000716,-5.040590348,0.000000791,loss,yes,-0.0000185,0.0000122,-1.518357784,0.12994338,neg,ns,0.017249024,0.003562071,4.842413763,0.00000203,pos,ns,5.692909159,-0.000740844,0.000122499,-6.047735329,4.22E-09,neg,yes,0.857202161,Med13l,Med13l_Exon,5,118593480,118593529,118593480,118593481,50,+,CGTGATGTCAAACCAGATTGCAAAGAGTTATGGATATTCTGGTGGGGAGA,"Exon (Med13l-203/Med13l, exon 2 of 5)",5,118560679,118720114,159436,1,Med13l-203,32801,Med13l-203;Med13l-201;Med13l-202;Med13l-204,Med13l;Med13l;Med13l;Med13l,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,16,76199,ENSMUSG00000018076,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9959,cg16907016,-0.0000914,0.0000128,-7.170903024,5.50E-12,loss,yes,0.0000329,0.0000217,1.518168878,0.129990971,pos,ns,-0.014613104,0.006346672,-2.302482863,0.021970153,neg,ns,1.65816692,0.000440155,0.000218262,2.01663832,0.044595247,pos,ns,0.8587602,Satb1,Satb1_Intron,17,51760467,51760516,51760467,51760468,50,-,CGGCAGTTAAATTGAAATATTTCACAGCGTGTGTCAGAAACATGCAGAAT,"Intron (Satb1-208/Satb1, intron 9 of 10)",17,51736187,51832672,96486,2,Satb1-208,72156,Satb1-208;Satb1-213;Satb1-204;Satb1-214;Satb1-203;Satb1-211;Satb1-207,Satb1;Satb1;Satb1;Satb1;Satb1;Satb1;Satb1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,28,36,20230,ENSMUSG00000023927,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14343,cg06427241,0.00000909,0.0000052,1.748645614,0.081342099,gain,ns,-0.0000134,0.00000883,-1.518120466,0.13000317,neg,ns,-0.002562206,0.002587209,-0.990335593,0.322782467,neg,ns,0.491090064,0.0000992,0.000089,1.115167038,0.265642598,pos,ns,0.93641556,Dph1,Dph1_Intron,11,75182878,75182927,75182926,75182927,50,+,CTGCTTGTTAGCTGTCCGGATGGTAAATTAATGGGGCTGCAGCCTGGGCG,"Intron (Dph1-201/Dph1, intron 6 of 12)",11,75177643,75190519,12877,2,Dph1-201,7592,Dph1-201;Dph1-205;Dph1-204;Dph1-203;Dph1-202;Ovca2-201;Ovca2-202,Dph1;Dph1;Dph1;Dph1;Dph1;Ovca2;Ovca2,0;0;-1566;0;0;-4043;-4091,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,116905,ENSMUSG00000078789,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2862,cg19065912,0.000105314,0.00000902,11.67407711,2.41E-26,gain,yes,0.0000233,0.0000153,1.518093687,0.130009918,pos,ns,0.018057908,0.004489944,4.021856468,0.0000726,pos,ns,4.13913256,-0.000468011,0.000154409,-3.030987069,0.002643045,neg,ns,0.256016628,Zfp503,Zfp503_Promoter,14,21994489,21994538,21994537,21994538,50,-,TTATTGTCTGCGTGATGGATGGGCCCGGGGACGAGACACCAAATACTTCG,Promoter (4-5kb),14,21983959,21989601,5643,2,Zfp503-201,-4937,Zfp503-201,Zfp503,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,18,27,218820,ENSMUSG00000039081,mapped to different genes,14,21994122,21994568,447,*,447,26,0.579418345,0.69759904,0.058165548,4.29E-14,CpGisland,TRUE,U3,Pr-B
8846,cg02549298,-0.00000216,0.0000021,-1.029348138,0.304118559,loss,ns,-0.00000541,0.00000357,-1.517945594,0.130047241,neg,ns,-0.002406248,0.001044723,-2.30324156,0.021926887,neg,ns,1.659023018,0.0000416,0.0000359,1.157928963,0.247784355,pos,ns,0.963623337,Ldb1,Ldb1_Exon,19,46033143,46033192,46033191,46033192,50,+,ATTTGCTTTCTTGGCTGGACGGAGGCTTGCTGTTCCAGGGGCTGTTGGCG,"Exon (Ldb1-207/Ldb1, exon 11 of 11)",19,46031570,46045210,13641,2,Ldb1-207,12018,Ldb1-207;Ldb1-206;Ldb1-202;Ldb1-208;Ldb1-201;Ldb1-205;Ldb1-203;Ldb1-204,Ldb1;Ldb1;Ldb1;Ldb1;Ldb1;Ldb1;Ldb1;Ldb1,0;0;0;0;0;0;1686;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,9,16825,ENSMUSG00000025223,conserved gene and region,19,46033191,46033306,116,*,116,12,0.637931035,1.01978022,0.103448276,1.21E-09,CpGisland,TRUE,U10,Tr-S
4909,cg19488106,-0.0000172,0.0000282,-0.611402792,0.541381038,loss,ns,-0.0000726,0.0000478,-1.517860924,0.130068584,neg,ns,-0.04510687,0.014011254,-3.219331273,0.001421087,neg,ns,2.847379208,0.001535744,0.000481846,3.18720938,0.001583056,pos,ns,0.473557239,Ncs1,Ncs1_Intergenic_upstream,2,31234347,31234396,31234347,31234348,50,+,CGGGTGGCTGCATTGATTTTTAATCACGTTTTACCTCTGTGGAATGAGTC,Distal Intergenic,2,31245823,31295989,50167,1,Ncs1-201,-11427,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,14299,ENSMUSG00000062661,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23494,cg09646716,-0.0000269,0.00000518,-5.1866942,0.000000387,loss,yes,-0.0000134,0.0000088,-1.517825967,0.130077396,neg,ns,0.005884157,0.002578914,2.281641198,0.023188219,pos,ns,1.634732606,-0.000215015,0.0000887,-2.424384575,0.015905913,neg,ns,0.899301707,Dpyd,Dpyd_Intron,3,118664534,118664583,118664534,118664535,50,-,CGGTGGTGTCACAGACCCAAATAAAGACTGTTGCATGCAAAATATTTATG,"Intron (Dpyd-201/Dpyd, intron 2 of 22)",3,118562129,119432924,870796,1,Dpyd-201,102405,Dpyd-201;Dpyd-202;Dpyd-205;Dpyd-204,Dpyd;Dpyd;Dpyd;Dpyd,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,14,29,99586,ENSMUSG00000033308,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14937,cg01987439,0.00000226,0.00000502,0.449579246,0.653328033,gain,ns,0.000013,0.00000853,1.517691743,0.130111237,pos,ns,0.007821864,0.002500173,3.128529184,0.001923788,pos,ns,2.715842797,-0.000130943,0.000086,-1.522928675,0.128795968,neg,ns,0.183201462,Nr2f1,Nr2f1_Intergenic_downstream,13,78185499,78185548,78185499,78185500,50,-,CGTGAAATTGCGCCCAGCTGGTTGTGTAAGCAAACAAATAGTTTCATGTT,Distal Intergenic,13,78189872,78190443,572,2,Nr2f1-204,4944,Nr2f1-201;Nr2f1-205;Nr2f1-203;Nr2f1-202;Nr2f1-204,Nr2f1;Nr2f1;Nr2f1;Nr2f1;Nr2f1,0;0;0;0;4895,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,55,13865,ENSMUSG00000069171,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
18066,cg11674963,-0.00000926,0.0000118,-0.787395934,0.43165172,loss,ns,0.0000303,0.00002,1.517686549,0.130112547,pos,ns,0.002227947,0.005852166,0.380704767,0.703683078,pos,ns,0.152622893,0.000137911,0.000201255,0.685253356,0.493696133,pos,ns,0.742122386,Pola1,Pola1_Intron,X,93462296,93462345,93462344,93462345,50,+,ATTTCAGAGCTTGACATCGGCTCTTCCACAGTTAGCCCATCTGCAAGTCG,"Intron (Pola1-201/Pola1, intron 33 of 36)",20,93304767,93632155,327389,2,Pola1-201,169810,Pola1-201,Pola1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,59,62,18968,ENSMUSG00000006678,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13176,cg16167976,-0.00000361,0.00000566,-0.638924154,0.52334406,loss,ns,0.0000146,0.00000961,1.517562609,0.130143801,pos,ns,0.008709197,0.002815545,3.093254407,0.002159958,pos,ns,2.665554672,-0.000303535,0.0000968,-3.134843331,0.001884116,neg,ns,0.890960766,Gm7627,Gm7627_Intergenic_upstream,7,69665175,69665224,69665223,69665224,50,+,ATTTGGTCTCTAATTAGACTTCACTAGATTTACAGCTTTTAATTTATACG,Distal Intergenic,7,69605842,69606840,999,2,Gm7627-201,-58335,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,11,665410,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11842,cg26616468,-0.0000329,0.00000792,-4.150929948,0.0000428,loss,ns,0.0000204,0.0000135,1.517333216,0.130201664,pos,ns,-0.007181242,0.003944221,-1.820699851,0.069616478,neg,ns,1.157287954,0.000230828,0.000135641,1.701752208,0.089804428,pos,ns,0.844789672,Uaca,Uaca_Intron,9,61112059,61112108,61112059,61112060,50,+,CGCTCTGACGACAGAGTATACAGATAAAAGATAATTGCTTGGCTTGACTC,"Intron (Gm34004-201/Gm34004-201, intron 3 of 3)",9,60866145,60870130,3986,1,Uaca-204,245914,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,7,72565,ENSMUSG00000034485,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20579,cg07584109,0.000000793,0.00000166,0.477899369,0.633058639,gain,ns,0.00000428,0.00000282,1.517325696,0.130203561,pos,ns,0.003064408,0.000825844,3.710636766,0.000244983,pos,ns,3.610864737,-0.000102075,0.0000284,-3.594109492,0.000378508,neg,ns,0.960444639,Srek1,Srek1_fiveUTR,13,103764280,103764329,103764328,103764329,50,-,TTGAGCTATGGGTCACCTGTACTGGAAACTTAATGTTCATGAACCAAACG,Promoter (<=1kb),13,103739348,103764582,25235,2,Srek1-204,253,Srek1-204;Srek1-201;Srek1-210;Srek1-205;Srek1-209;Srek1-206;Srek1-202;Srek1-208,Srek1;Srek1;Srek1;Srek1;Srek1;Srek1;Srek1;Srek1,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,7,10,218543,ENSMUSG00000032621,mapped to different genes,13,103764328,103764416,89,*,89,9,0.516853933,1.525714286,0.101123596,0.000000335,CpGisland,TRUE,U11,Tr-P
13008,cg27248455,-0.00000367,0.00000166,-2.207712074,0.027996384,loss,ns,0.00000428,0.00000282,1.517280812,0.130214885,pos,ns,0.00243188,0.000826316,2.943038791,0.003495418,pos,ns,2.456500871,-0.0000528,0.0000284,-1.856325976,0.064355766,neg,ns,0.048529878,Hes7,Hes7_threeUTR,11,69123101,69123150,69123101,69123102,50,+,CGGGTGAGATGTGGTCTATATTAGAGTATCTATATAAATATATATTTCCC,3' UTR,11,69120404,69124055,3652,1,Hes7-201,2697,Aloxe3-201;Aloxe3-203;Aloxe3-205;Hes7-201,Aloxe3;Aloxe3;Aloxe3;Hes7,-2746;-3065;-3253;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,2,84653,ENSMUSG00000023781,conserved gene and region,11,69123063,69123102,40,*,40,9,0.875,1.304347826,0.225,1.08E-10,CpGisland,TRUE,NA,NRS
10579,cg25354219,0.0000214,0.00000747,2.859463062,0.004531371,gain,ns,0.0000193,0.0000127,1.517257195,0.130220844,pos,ns,0.013292563,0.003719367,3.573877768,0.000407741,pos,ns,3.389615733,-0.000452834,0.000127909,-3.540291216,0.000460995,neg,ns,0.125853192,Asb5,Asb5_Exon,8,54529798,54529847,54529846,54529847,50,-,GCTCCTGTCTTTGAAGGCGGTGGTGATGAAGCAGCCGAAGGTGAGCGCCG,Promoter (<=1kb),8,54529580,54583637,54058,1,Asb5-202,218,Asb5-202;Spcs3-201,Asb5;Spcs3,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,76294,ENSMUSG00000031519,mapped to different genes,8,54529498,54530184,687,*,687,84,0.719068413,0.94744619,0.122270742,6.19E-72,CpGisland,TRUE,U1,Pr-A
22349,cg02349847,-0.00000236,0.00000596,-0.39542837,0.692798749,loss,ns,0.0000154,0.0000101,1.517247711,0.130223237,pos,ns,0.008474692,0.0029673,2.85602769,0.004579399,pos,ns,2.339191512,-0.000299167,0.000102045,-2.931707951,0.00362187,neg,ns,0.891228289,Btbd10,Btbd10_threeUTR,7,113325939,113325988,113325939,113325940,50,+,CGAGCACCATCATTTGATAACTCATGCATTAGGGCACCTGAAATGAAATC,3' UTR,7,113315626,113347285,31660,2,Btbd10-202,21297,Btbd10-202;Btbd10-201;Btbd10-203;Btbd10-205;Btbd10-206;Gm15994-201,Btbd10;Btbd10;Btbd10;Btbd10;Btbd10;Gm15994,0;0;0;0;5321;1681,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,6,68815,ENSMUSG00000038187,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25128,cg12121908,0.0000567,0.0000147,3.849031615,0.00014403,gain,ns,-0.000038,0.000025,-1.517078648,0.1302659,neg,ns,0.071489378,0.007334493,9.747009783,9.36E-20,pos,yes,19.02882651,-0.001642472,0.000252233,-6.511736575,2.99E-10,neg,yes,0.492392132,Ahdc1,Ahdc1_Intron,4,133043094,133043143,133043094,133043095,50,+,CGGAGTGTGTGTCTGCCATTAGCGACTGCCGCAACTGTGTCAAGGTTACC,"Intron (Ahdc1-210/Ahdc1, intron 2 of 3)",4,133011260,133060820,49561,1,Ahdc1-210,31834,Ahdc1-210;Ahdc1-203;Ahdc1-204;Ahdc1-205;Ahdc1-207;Ahdc1-211;Ahdc1-209;Ahdc1-206;Ahdc1-201;Ahdc1-202,Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,35,49,230793,ENSMUSG00000037692,conserved gene and region,4,133043047,133043197,151,*,151,12,0.635761589,0.795085564,0.079470199,2.68E-08,CpGisland,TRUE,U8,En-Pd
19015,cg11627306,-0.00000818,0.00000976,-0.837770356,0.402805127,loss,ns,0.0000252,0.0000166,1.517057291,0.13027129,pos,ns,0.003347898,0.004858224,0.689119612,0.491263451,pos,ns,0.308685545,0.000506936,0.000167074,3.034200784,0.002615863,pos,ns,0.262860809,Prdm8,Prdm8_Intron,5,98169905,98169954,98169953,98169954,50,-,ATCTGGGGACCCCTGATGCATGCGATATTGCCCTTTAGATGCCTCTTCCG,"Intron (Prdm8-202/Prdm8, intron 1 of 4)",5,98167198,98187454,20257,1,Prdm8-202,2707,Prdm8-202,Prdm8,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,10,77630,ENSMUSG00000035456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
22152,cg22131459,-0.000000255,0.000000535,-0.476144633,0.634306737,loss,ns,0.00000138,0.000000909,1.516977737,0.13029137,pos,ns,-0.00000501,0.000266197,-0.018808717,0.9850058,neg,ns,0.006561212,0.00000206,0.00000915,0.225155047,0.822007008,pos,ns,0.988398395,Agbl4,Agbl4_Exon,4,111448557,111448606,111448557,111448558,50,-,CGGAGTTACGGAGCACTTTCAGTGAGGAAGCAAATACGTCGTCCTATTAC,"Exon (Bend5-201/Bend5, exon 4 of 6)",4,110397698,111567010,1169313,1,Agbl4-205,1050859,Agbl4-205;Agbl4-206;Agbl4-201;Agbl4-202;Agbl4-209;Bend5-201;Bend5-203;Bend5-206;Bend5-202,Agbl4;Agbl4;Agbl4;Agbl4;Agbl4;Bend5;Bend5;Bend5;Bend5,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,16,78933,ENSMUSG00000061298,mapped to different genes,4,111448510,111448618,109,*,109,9,0.52293578,1.208128079,0.082568807,0.0000019,CpGisland,TRUE,NA,NRS
7038,cg00433042,0.0000442,0.00000576,7.685149556,2.03E-13,gain,yes,0.0000148,0.00000978,1.516846501,0.1303245,pos,ns,0.008018506,0.00286485,2.798927534,0.00544854,pos,ns,2.263719881,-0.00000957,0.0000985,-0.097181888,0.922644751,neg,ns,0.151965232,Tfap2a,Tfap2a_Intergenic_downstream,13,40714154,40714203,40714202,40714203,50,-,GAGTATGTACAGTTAGGGTTCATTCGCCTCATTATTTTGTTACATCTACG,Distal Intergenic,13,40716724,40728944,12221,2,Tfap2a-209,14790,Tfap2a-201;Tfap2a-202;Tfap2a-205;Tfap2a-203;Tfap2a-209;Tfap2a-208;Tfap2a-206,Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a,0;0;0;0;0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,15,57,21418,ENSMUSG00000021359,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
26518,cg14847184,0.000033,0.00000975,3.387117084,0.000797403,gain,ns,-0.0000251,0.0000166,-1.516453043,0.130423866,neg,ns,-0.011487771,0.004851647,-2.367808421,0.018507313,neg,ns,1.732656621,0.000428607,0.000166848,2.568853713,0.010671308,pos,ns,0.80486471,Casz1,Casz1_Intron,4,148860836,148860885,148860884,148860885,50,+,TTAATCATTCAGGCTTTCCGAGCTAATCCACATGCCCTAGAGAATTCCCG,"Intron (Casz1-201/Casz1, intron 2 of 15)",4,148804429,148945129,140701,1,Casz1-201,56407,Casz1-201;Casz1-202,Casz1;Casz1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,94,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
8037,cg26698586,-0.0000603,0.0000246,-2.452743303,0.014727864,loss,ns,0.0000634,0.0000418,1.516305392,0.13046117,pos,ns,-0.016353078,0.012241739,-1.335846035,0.182579461,neg,ns,0.738548079,0.001280395,0.000420992,3.041373192,0.002556122,pos,ns,0.291541584,Pax2,Pax2_Intergenic_upstream,19,44699068,44699117,44699068,44699069,50,+,CGTCTGATAATCCGGCCTGCCATAAAATTAGACTAGCAAATACCTCCTGA,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-56928,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,19,44698991,44699081,91,*,91,9,0.648351648,0.94137931,0.098901099,0.000000407,CpGisland,TRUE,U13,Hc-P
26219,cg05260869,-0.00000363,0.00000226,-1.606646773,0.109149942,loss,ns,0.00000582,0.00000384,1.516159387,0.130498066,pos,ns,0.000176708,0.001124079,0.157202244,0.875187797,pos,ns,0.057898747,0.0000154,0.0000387,0.399098473,0.690095437,pos,ns,0.034516677,Hs2st1,Hs2st1_fiveUTR,3,144569831,144569880,144569831,144569832,50,+,CGGCATCATAATCCTGAGGAGCCCCATGAAACCCGCTGCTCGGGATCAAG,Promoter (<=1kb),3,144429706,144570181,140476,2,Hs2st1-201,301,Hs2st1-201;Hs2st1-202;Hs2st1-203;Selenof-203;Selenof-201;Selenof-202;Selenof-206,Hs2st1;Hs2st1;Hs2st1;Selenof;Selenof;Selenof;Selenof,0;0;0;-424;-546;-813;-834,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,6,23908,ENSMUSG00000040151,conserved gene but different region,3,144569789,144570495,707,*,707,84,0.710042433,0.959232459,0.118811881,9.67E-71,CpGisland,TRUE,U1,Pr-A
1499,cg22018432,-0.000000487,0.00000185,-0.263214421,0.792560176,loss,ns,0.00000477,0.00000314,1.515924478,0.130557446,pos,ns,0.002172204,0.000921001,2.358524146,0.018968196,pos,ns,1.721973964,-0.000081,0.0000317,-2.558759907,0.010979405,neg,ns,0.957040381,Gm11819,Gm11819_Intergenic_upstream,4,13286371,13286420,13286419,13286420,50,-,GTGTTATTAATTTCATATATCAAGTTCGTAGTGGCCATCTGTTCCCTCCG,Distal Intergenic,4,13444770,13445141,372,1,Gm11819-201,-158399,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,19,22,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25448,cg00791213,0.000000237,0.00000217,0.108929949,0.913328527,gain,ns,0.00000559,0.00000369,1.515603531,0.130638609,pos,ns,0.002797064,0.00108129,2.586784037,0.010143013,pos,ns,1.993833035,-0.00006,0.0000372,-1.614388597,0.107460515,neg,ns,0.960891763,Zfp281,Zfp281_threeUTR,1,136628355,136628404,136628403,136628404,50,+,TAATTGCTTTACTCTCAGGAAAGTGTAATAACGCATGGGAATTCTGTACG,3' UTR,1,136624901,136630053,5153,1,Zfp281-201,3454,Zfp281-201;Zfp281-202,Zfp281;Zfp281,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,7,226442,ENSMUSG00000041483,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
5425,cg26097722,-0.000000553,0.0000011,-0.502106997,0.615948705,loss,ns,0.00000283,0.00000187,1.515508173,0.130662731,pos,ns,0.001008333,0.000547999,1.84002559,0.06672035,pos,ns,1.175741687,-0.0000303,0.0000188,-1.608258327,0.108796539,neg,ns,0.96892266,Exoc4,Exoc4_Exon,6,33921431,33921480,33921431,33921432,50,+,CGCATCAGTGAGTCTGGCATCAAGAAAATGTGTAGGAACATTTTTGTTCT,"Exon (Exoc4-201/Exoc4, exon 17 of 18)",6,33249085,33973979,724895,1,Exoc4-201,672346,Exoc4-201,Exoc4,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,7,20336,ENSMUSG00000029763,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25519,cg19834279,0.00000153,0.00000157,0.976627858,0.329514918,gain,ns,-0.00000404,0.00000267,-1.515189794,0.130743294,neg,ns,-0.000700194,0.000781573,-0.895877322,0.371013409,neg,ns,0.430610395,0.00000635,0.0000269,0.236289518,0.813364065,pos,ns,0.936183452,Jag1,Jag1_Exon,2,137090872,137090921,137090872,137090873,50,-,CGGCAGTGGTCTTTCAGGTGTGAGCAGTTCTTGCCCTCATAGTCCTCGGG,"Exon (Jag1-201/Jag1, exon 13 of 26)",2,137081456,137116644,35189,2,Jag1-201,25723,Jag1-201;Jag1-202,Jag1;Jag1,0;-4923,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,16,16449,ENSMUSG00000027276,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23758,cg20196134,-0.000000804,0.00000146,-0.549341498,0.583166607,loss,ns,-0.00000377,0.00000249,-1.515127359,0.130759097,neg,ns,0.000234329,0.000728081,0.321844036,0.747787765,pos,ns,0.126221645,-0.000039,0.000025,-1.558740249,0.120078149,neg,ns,0.082915588,Foxo6,Foxo6_Intron,4,120282539,120282588,120282587,120282588,50,-,AACCGTCTCATCTCTTTAAATTAGTCTGTCTGCAATTACCGCCTGGCACG,"Intron (Foxo6-201/Foxo6, intron 1 of 1)",4,120267079,120287349,20271,2,Foxo6-201,4761,Foxo6-201,Foxo6,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,14,42,329934,ENSMUSG00000052135,conserved gene and region,4,120282454,120283157,704,*,704,60,0.700284091,0.697259822,0.085227273,2.40E-41,CpGisland,TRUE,U3,Pr-B
24273,cg01434924,-0.000002,0.00000164,-1.215656257,0.225040842,loss,ns,0.00000423,0.00000279,1.51501629,0.130787214,pos,ns,0.001444558,0.000817864,1.766257163,0.078336876,pos,ns,1.106033753,-0.0000316,0.0000281,-1.121795241,0.262817674,neg,ns,0.956752529,Pou3f1,Pou3f1_Intron,4,124465387,124465436,124465387,124465388,50,+,CGCACTTACTGTACATTTCTCAAAGCCATCAGCCTTGATTGAAGGCTAAT,"Intron (1700057H15Rik-202/1700057H15Rik-202, intron 2 of 3)",4,124656807,124660655,3849,1,Pou3f1-201,-191371,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,43,85,18991,ENSMUSG00000090125,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25308,cg21728808,-0.000000269,0.000000274,-0.984783237,0.325498527,loss,ns,0.000000704,0.000000465,1.514980753,0.130796211,pos,ns,0.000124075,0.000136149,0.91131636,0.3628368,pos,ns,0.440288672,-0.00000407,0.00000468,-0.870121875,0.384907056,neg,ns,0.99277639,Dock1,Dock1_Intron,7,134756819,134756868,134756819,134756820,50,+,CGTTGGACGACGCCATTCGACACAAGCCGCTGAACATGTCATCCCGTTTT,"Intron (Dock1-205/Dock1, intron 11 of 26)",7,134670654,134876943,206290,1,Dock1-205,86165,Dock1-205;Dock1-206;Dock1-201;Dock1-204;Dock1-203,Dock1;Dock1;Dock1;Dock1;Dock1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,5,330662,ENSMUSG00000058325,conserved gene but different region,7,134756817,134756864,48,*,48,7,0.604166667,1.647058824,0.145833333,0.000000957,CpGisland,TRUE,U10,Tr-S
10894,cg04990315,-0.0000182,0.00000717,-2.532623579,0.011814397,loss,ns,0.0000185,0.0000122,1.514979731,0.13079647,pos,ns,0.012929505,0.003569066,3.622657759,0.000340593,pos,ns,3.467764315,-0.000467357,0.00012274,-3.807699418,0.000169067,neg,ns,0.826652443,Nbea,Nbea_Intron,3,55751519,55751568,55751519,55751520,50,-,CGGCGTGCAGTAATTTGACTAATTATACCGGATTAGAGCATATTAATGCA,"Intron (Nbea-201/Nbea, intron 41 of 57)",3,55625195,56183701,558507,2,Nbea-201,432133,Nbea-201;Nbea-208,Nbea;Nbea,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,14,26422,ENSMUSG00000027799,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24263,cg11366519,0.00000793,0.00000445,1.781173357,0.075863173,gain,ns,-0.0000115,0.00000757,-1.514920426,0.130811486,neg,ns,-0.004748275,0.002216341,-2.142393753,0.032940473,neg,ns,1.482270172,0.000106675,0.0000762,1.39957282,0.162641147,pos,ns,0.911971099,Pou3f1,Pou3f1_Intergenic_upstream,4,124402191,124402240,124402239,124402240,50,+,GGTTATTATTTAAACGAGCTGCTCCTGGCTCACATGTTAATTAAAGCCCG,Distal Intergenic,4,124656807,124660655,3849,1,Pou3f1-201,-254567,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,24,85,18991,ENSMUSG00000090125,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17673,cg14654506,0.00000011,0.00000116,0.094539338,0.924741812,gain,ns,-0.00000298,0.00000197,-1.514713769,0.130863821,neg,ns,0.0000912,0.000576975,0.158004138,0.874556409,pos,ns,0.058212173,0.0000411,0.0000198,2.071216726,0.039165647,pos,ns,0.034541105,Ssbp2,Ssbp2_Exon,13,91371313,91371362,91371361,91371362,50,+,TGTTTCAAATAGGACTCTCCAAAATTTATTCTTGGGAAGACTGACAGCCG,"Exon (A830009L08Rik-201/A830009L08Rik-201, exon 3 of 3)",13,91460283,91688866,228584,1,Ssbp2-209,-88921,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,18,66970,ENSMUSG00000003992,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
20511,cg19139857,0.0000227,0.00000425,5.343881564,0.000000177,gain,yes,-0.0000109,0.00000722,-1.514384163,0.130947326,neg,ns,-0.005422816,0.002115851,-2.562948146,0.010850615,neg,ns,1.964545666,0.000156993,0.0000728,2.157563428,0.031729781,pos,ns,0.904353979,Fmnl1,Fmnl1_Exon,11,103180885,103180934,103180885,103180886,50,+,CGGTTTCAAGTCAAGAATCCCCCCGCAGCCTACATCCAGAAGCTGAAGAG,"Exon (Fmnl1-202/Fmnl1, exon 3 of 26)",11,103171107,103198901,27795,1,Fmnl1-202,9778,Fmnl1-202;Fmnl1-207;Fmnl1-203;Fmnl1-204;Fmnl1-206,Fmnl1;Fmnl1;Fmnl1;Fmnl1;Fmnl1,0;0;0;0;-4294,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,57778,ENSMUSG00000055805,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1004,cg22213043,-0.00000312,0.00000382,-0.81828339,0.413823927,loss,ns,0.00000982,0.00000649,1.514316939,0.130964362,pos,ns,0.0054129,0.001900531,2.848098846,0.004692022,pos,ns,2.328639977,-0.000159635,0.0000654,-2.442428547,0.015147095,neg,ns,0.907023498,Cpsf7,Cpsf7_threeUTR,19,10532119,10532168,10532167,10532168,50,-,TCCTGGGATCAGGTTGGATTGATCTCTGAAAGAGAACTATCCTGAGGACG,3' UTR,19,10525266,10538840,13575,1,Cpsf7-202,6853,Cpsf7-202;Cpsf7-207;Cpsf7-205;Cpsf7-201;Cpsf7-203;Cpsf7-206;Cpsf7-208;Cpsf7-204;Tmem216-205,Cpsf7;Cpsf7;Cpsf7;Cpsf7;Cpsf7;Cpsf7;Cpsf7;Cpsf7;Tmem216,0;0;0;0;0;0;0;-221;23568,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,2,269061,ENSMUSG00000034820,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18478,cg19111481,-0.00000573,0.00000292,-1.96439134,0.050377799,loss,ns,0.0000075,0.00000495,1.514106822,0.131017622,pos,ns,0.002499721,0.001451346,1.722346079,0.086004229,pos,ns,1.065480192,-0.0000955,0.0000499,-1.913101471,0.056656115,neg,ns,0.92558618,Atr,Atr_Exon,9,95945114,95945163,95945114,95945115,50,-,CGCCAGTGTATGCTACCAAAGTCAGCAGCTTTATCTGAAAAACTCAAAGT,"Exon (Atr-201/Atr, exon 43 of 47)",9,95857597,95951644,94048,1,Atr-201,87517,Atr-201;Atr-213;Atr-205,Atr;Atr;Atr,0;0;7944,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,245000,ENSMUSG00000032409,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12104,cg00715063,-0.00000422,0.00000167,-2.528988649,0.011934899,loss,ns,0.00000429,0.00000283,1.514086319,0.13102282,pos,ns,0.002789934,0.00082965,3.362782564,0.000868372,pos,ns,3.061294324,-0.0000955,0.0000285,-3.346058931,0.00092051,neg,ns,0.955935781,Pias1,Pias1_fiveUTR,9,62952149,62952198,62952149,62952150,50,-,CGTAGCCCAACAGTACTTGGAGTTCAGAAACTCTAAGGCTCATAACCATT,5' UTR,9,62878368,62980879,102512,2,Pias1-201,28681,Pias1-201;Pias1-202;Pias1-205;Pias1-203,Pias1;Pias1;Pias1;Pias1,0;0;0;-153,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,12,56469,ENSMUSG00000032405,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4831,cg00134217,0.0000577,0.00000495,11.6379434,3.23E-26,gain,yes,-0.0000127,0.00000842,-1.514064516,0.131028348,neg,ns,-0.007376141,0.002466076,-2.991043518,0.003003238,neg,ns,2.522410299,0.000352221,0.0000848,4.153154722,0.0000424,pos,ns,0.822604541,Agbl5,Agbl5_Exon,5,30890175,30890224,30890175,30890176,50,+,CGCTGTGGGGGATTGCTGTTCAGTTCTCGCTTTGATTCAGGGAATCTAGC,"Exon (Agbl5-203/Agbl5, exon 2 of 4)",5,30888694,30891207,2514,1,Agbl5-203,1481,Agbl5-203;Agbl5-201;Agbl5-207;Agbl5-213;Agbl5-205;Agbl5-218;Agbl5-214;Agbl5-208;Agbl5-215;Agbl5-211;Agbl5-209;Agbl5-202;Agbl5-204;Agbl5-210;Agbl5-217;Agbl5-216;Agbl5-212,Agbl5;Agbl5;Agbl5;Agbl5;Agbl5;Agbl5;Agbl5;Agbl5;Agbl5;Agbl5;Agbl5;Agbl5;Agbl5;Agbl5;Agbl5;Agbl5;Agbl5,0;0;0;0;0;0;0;0;0;0;0;0;0;-58;0;-4773;-4915,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,5,231093,ENSMUSG00000029165,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
24719,cg15352321,0.00000668,0.00000266,2.515143372,0.012403977,gain,ns,-0.00000683,0.00000451,-1.51385619,0.131081174,neg,ns,0.000298758,0.001322384,0.225923996,0.821409414,pos,ns,0.085440324,-0.0000213,0.0000455,-0.469102981,0.639325768,neg,ns,0.918489662,Ccnt2,Ccnt2_threeUTR,1,127803466,127803515,127803514,127803515,50,-,TCACGAGTACAGTACAAGCAGCCAGCATATGGACTACAAAGACACATTCG,3' UTR,1,127774164,127805932,31769,1,Ccnt2-202,29302,Ccnt2-202;Ccnt2-201;Ccnt2-207,Ccnt2;Ccnt2;Ccnt2,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,11,72949,ENSMUSG00000026349,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12632,cg21125558,-0.00000257,0.00000232,-1.109712098,0.267983188,loss,ns,-0.00000596,0.00000394,-1.513786051,0.131098963,neg,ns,-0.001728537,0.001152845,-1.499366943,0.134796134,neg,ns,0.870322563,0.00000664,0.0000396,0.167404818,0.867160685,pos,ns,0.949491924,Snrpa1,Snrpa1_Exon,7,66070155,66070204,66070155,66070156,50,+,CGGGGTGCACAGCTTGCAAAGGATATTGCCAGGAGAAGCAAAACGTAAGA,"Exon (Snrpa1-206/Snrpa1, exon 6 of 9)",7,66059003,66074343,15341,1,Snrpa1-207,11152,Snrpa1-207;Snrpa1-202;Snrpa1-206;Snrpa1-208;Snrpa1-201;Snrpa1-204;Snrpa1-209;Snrpa1-205,Snrpa1;Snrpa1;Snrpa1;Snrpa1;Snrpa1;Snrpa1;Snrpa1;Snrpa1,0;9856;0;0;0;0;0;1303,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,68981,ENSMUSG00000030512,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6536,cg19789891,-0.0000514,0.0000102,-5.021158537,0.000000868,loss,yes,0.0000263,0.0000174,1.513761298,0.131105241,pos,ns,-0.005616568,0.005094355,-1.102508138,0.271096005,neg,ns,0.566876882,-0.0000538,0.000175194,-0.306845478,0.759166997,neg,ns,0.289665976,Zfp536,Zfp536_Intron,7,37640057,37640106,37640105,37640106,50,-,TTGTCGCTAATAAGCTGGAAGTTACTTTGATAACAGCAGGGTTAGACTCG,"Intron (Zfp536-202/Zfp536, intron 4 of 6)",7,37479104,37769624,290521,2,Zfp536-202,129518,Zfp536-202;Zfp536-201;Zfp536-203;Zfp536-206;Zfp536-209;Zfp536-208,Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,73,112,243937,ENSMUSG00000043456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2554,cg19421836,0.00000197,0.0000022,0.895573434,0.371175494,gain,ns,-0.00000567,0.00000374,-1.513760092,0.131105547,neg,ns,-0.000956814,0.001097121,-0.872113548,0.383821388,neg,ns,0.415870829,0.0000337,0.0000377,0.892101634,0.373030392,pos,ns,0.934153276,Ppp3cb,Ppp3cb_Exon,14,20509434,20509483,20509482,20509483,50,-,CTTGCCATCTTGCCAATTGCTCGAATTTTGTTTCTTATGATTTCTTTCCG,"Exon (Ppp3cb-202/Ppp3cb, exon 11 of 14)",14,20499364,20546573,47210,2,Ppp3cb-202,37090,Ppp3cb-202;Ppp3cb-205;Ppp3cb-201;Ppp3cb-206;Ppp3cb-207,Ppp3cb;Ppp3cb;Ppp3cb;Ppp3cb;Ppp3cb,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,10,19056,ENSMUSG00000021816,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10417,cg26156313,0.0000275,0.00000666,4.133989516,0.0000459,gain,ns,0.0000171,0.0000113,1.513709266,0.131118439,pos,ns,0.014605435,0.003315409,4.405319186,0.0000146,pos,ns,4.836631838,-0.000376438,0.000114017,-3.301609551,0.001073595,neg,ns,0.212660333,Prdm6,Prdm6_Intron,18,53468822,53468871,53468870,53468871,50,+,GACTGTTTATTCAAGGTGATAAAATGGTCCATCAGCAGTAATCTCCATCG,"Intron (Prdm6-201/Prdm6, intron 1 of 6)",18,53464516,53575857,111342,1,Prdm6-201,4306,Prdm6-205;Prdm6-201;Prdm6-203,Prdm6;Prdm6;Prdm6,5239;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,16,225518,ENSMUSG00000069378,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
12005,cg18182637,0.000000128,0.0000014,0.091610332,0.927066811,gain,ns,-0.00000359,0.00000237,-1.51364551,0.131134613,neg,ns,0.000277035,0.000695064,0.39857526,0.690480582,pos,ns,0.160848531,0.00000155,0.0000239,0.064858193,0.948328711,pos,ns,0.965648287,Ncor1,Ncor1_Exon,11,62333647,62333696,62333695,62333696,50,-,GGATTGAGATACATACAGCTACTAGAAGAGTCTGAACTTTGAGAGCCACG,"Exon (Ncor1-204/Ncor1, exon 36 of 45)",11,62316426,62438515,122090,2,Ncor1-204,104819,Gm12276-201;Ncor1-204;Ncor1-201;Ncor1-213;Ncor1-214;Ncor1-202;Ncor1-205;Ncor1-209;Ncor1-223;Ncor1-219,Gm12276;Ncor1;Ncor1;Ncor1;Ncor1;Ncor1;Ncor1;Ncor1;Ncor1;Ncor1,2226;0;0;0;0;0;0;0;0;-2704,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,10,20185,ENSMUSG00000018501,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8478,cg11705837,0.0000104,0.00000334,3.110454536,0.00204165,gain,ns,0.00000858,0.00000567,1.513571466,0.131153399,pos,ns,0.00287336,0.001661522,1.729354009,0.08474122,pos,ns,1.07190529,0.00000376,0.0000571,0.065815055,0.947567493,pos,ns,0.076389686,Lbx1,Lbx1_Intergenic_downstream,19,45223758,45223807,45223806,45223807,50,+,GTAGGCTATTAAGAGTAATTAGCATCTTTTGCGCATGCAGATTTACTTCG,Distal Intergenic,19,45232684,45235812,3129,2,Lbx1-201,12005,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,30,50,16814,ENSMUSG00000025216,mapped to different genes,19,45223712,45223906,195,*,195,15,0.564102564,0.969827586,0.076923077,4.54E-10,CpGisland,TRUE,U13,Hc-P
14469,cg02369056,-0.00000324,0.00000157,-2.064895433,0.039764146,loss,ns,0.00000403,0.00000266,1.513569717,0.131153843,pos,ns,0.001995956,0.000779956,2.559063291,0.01097003,pos,ns,1.959792167,-0.0000577,0.0000268,-2.151338639,0.032221863,neg,ns,0.961822395,Zc3h3,Zc3h3_Intron,15,75808394,75808443,75808394,75808395,50,+,CGGAAGAAAATTAGATCCACTTAGCAATGTGAATTAATATGGAAATAGCA,"Intron (Zc3h3-201/Zc3h3, intron 4 of 11)",15,75754430,75841915,87486,2,Zc3h3-201,33472,Zc3h3-201;Zc3h3-203;Zc3h3-202,Zc3h3;Zc3h3;Zc3h3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,18,223642,ENSMUSG00000075600,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11285,cg03676512,0.0000202,0.00000225,8.977780861,2.73E-17,gain,yes,-0.00000579,0.00000383,-1.513490637,0.131173908,neg,ns,0.002092724,0.001121486,1.866028537,0.062981581,pos,ns,1.200786441,-0.00000506,0.0000386,-0.131255281,0.895658506,neg,ns,0.054400079,Hand2,Hand2_fiveUTR,8,57320949,57320998,57320949,57320950,50,-,CGACATATATTAACCCGAGCGGCCCTAAAGATGTAGCTGTACATGGAGAT,Promoter (<=1kb),8,57320983,57324633,3651,1,Hand2-201,0,Hand2-201,Hand2,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,9,15111,ENSMUSG00000038193,mapped to different genes,8,57320856,57320969,114,*,114,14,0.587719298,1.422459893,0.122807018,2.66E-12,CpGisland,TRUE,U3,Pr-B
14676,cg08603555,-0.000000883,0.00000301,-0.29383844,0.769077993,loss,ns,0.00000773,0.00000511,1.513358185,0.131207522,pos,ns,0.000586426,0.001496376,0.391897371,0.695403317,pos,ns,0.157763242,-0.0000451,0.0000515,-0.876710214,0.381322929,neg,ns,0.484148545,Ctnna2,Ctnna2_fiveUTR,6,77243483,77243532,77243483,77243484,50,-,CGGAATAAAATATGATGTAGATTTCTGACCGAGCGCTTCCAATGGACATT,5' UTR,6,76881637,77979699,1098063,2,Ctnna2-204,736167,Ctnna2-204;Ctnna2-205;Ctnna2-202;Ctnna2-201;Lrrtm1-201;Lrrtm1-202;Lrrtm1-203;Lrrtm1-204,Ctnna2;Ctnna2;Ctnna2;Ctnna2;Lrrtm1;Lrrtm1;Lrrtm1;Lrrtm1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,24,12386,ENSMUSG00000063063,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
8032,cg21279699,-0.0000437,0.000016,-2.72886113,0.006718171,loss,ns,0.0000412,0.0000272,1.513327503,0.131215309,pos,ns,0.00565698,0.007976195,0.709232968,0.478712975,pos,ns,0.319924801,0.0000924,0.000274301,0.336887243,0.73642986,pos,ns,0.566545049,Pax2,Pax2_Intergenic_upstream,19,44698931,44698980,44698931,44698932,50,+,CGCCCTCACTTTAAATCAAGATAAAAGACTGAAGTGGAAAATGAGAGTCC,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-57065,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
3228,cg11525588,-0.0000163,0.00000475,-3.430497245,0.00068413,loss,ns,-0.0000122,0.00000807,-1.513288345,0.131225248,neg,ns,-0.008426752,0.002365459,-3.562416728,0.000425228,neg,ns,3.37137824,0.000229942,0.0000813,2.826652935,0.00500938,pos,ns,0.883429298,Gm11888,Gm11888_Intron,4,23280184,23280233,23280232,23280233,50,-,TCTCTGAAAGTATTTTACAACCATGACAGAAAACATTATCACTAATTCCG,"Intron (Gm11884-201/Gm11884-201, intron 1 of 4)",4,23484820,23486020,1201,1,Gm11888-201,-204636,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,14,625462,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3776,cg08070857,0.0000665,0.0000147,4.534713841,0.00000825,gain,ns,0.0000377,0.0000249,1.513068966,0.131280942,pos,ns,0.022793452,0.007301711,3.121659045,0.001967827,pos,ns,2.706013022,-0.000597777,0.000251105,-2.380584173,0.017889219,neg,ns,0.437763591,5730522E02Rik,5730522E02Rik_Intron,11,25356842,25356891,25356890,25356891,50,-,AGAGTTCTGTCCAAGAATAATCTAGTAAAAATGTGGACAGAGAACCACCG,"Intron (4933427E13Rik-204/4933427E13Rik-204, intron 1 of 1)",11,25602816,25620098,17283,2,5730522E02Rik-205,263256,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,90,70626,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27918,cg12733826,-0.00000101,0.00000674,-0.149209306,0.881485498,loss,ns,-0.0000173,0.0000115,-1.512889585,0.131326496,neg,ns,-0.008869738,0.003355635,-2.643236783,0.008629138,neg,ns,2.064032601,-0.0000152,0.0001154,-0.132118867,0.894975983,neg,ns,0.82479998,Prox1,Prox1_Intergenic_upstream,1,190270894,190270943,190270942,190270943,50,+,CCCTTCCAATTGGATCACGACCCTCTGTGTGCTCAGCTTAAGACCAGACG,Distal Intergenic,1,190118035,190170714,52680,2,Prox1-202,-100180,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,13,59,19130,ENSMUSG00000010175,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27757,cg07440569,-0.00000357,0.00000146,-2.440123327,0.015242219,loss,ns,0.00000376,0.00000249,1.512572199,0.131407126,pos,ns,0.002064654,0.000728483,2.834184239,0.004895775,pos,ns,2.310178568,-0.0000533,0.0000251,-2.126622577,0.034241095,neg,ns,0.950349728,Enah,Enah_Exon,1,181935674,181935723,181935674,181935675,50,+,CGCAAATTAGTGCTGTCCTGGGTAGCAGTAACCTTGCTCTGGGCTGCAAC,"Exon (Enah-201/Enah, exon 4 of 15)",1,181896384,182019661,123278,2,Enah-211,83938,Enah-211;Enah-202;Enah-203;Enah-205;Enah-210;Enah-201;Enah-204;Enah-212;Enah-216;Enah-213,Enah;Enah;Enah;Enah;Enah;Enah;Enah;Enah;Enah;Enah,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,13800,ENSMUSG00000022995,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
642,cg01702540,-0.00000167,0.00000337,-0.495039258,0.620923095,loss,ns,0.00000865,0.00000572,1.512560593,0.131410075,pos,ns,0.002737109,0.00167487,1.634221315,0.103227463,pos,ns,0.986204745,-0.000137307,0.0000576,-2.383851139,0.01773411,neg,ns,0.937150394,Gm9139,Gm9139_Intergenic_downstream,12,7412197,7412246,7412197,7412198,50,+,CGGTGCATATTGAAGCTATTCCCTGACAATAATACCATATTAAAAAGAAT,Distal Intergenic,12,7417425,7418124,700,2,Gm9139-201,5878,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,668380,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7058,cg27075410,0.0000128,0.00000281,4.565104174,0.00000721,gain,ns,0.00000721,0.00000477,1.512484216,0.131429484,pos,ns,0.003141987,0.001396962,2.249156817,0.025204232,pos,ns,1.598526526,-0.0000188,0.000048,-0.391414096,0.695760077,neg,ns,0.037736782,Tfap2a,Tfap2a_Exon,13,40728542,40728591,40728590,40728591,50,-,GGTGCTGCGGCTGCGGCTGGGCGTGCAGGGGGTTCAGGCTGTAGGGGTCG,"Exon (Tfap2a-201/Tfap2a, exon 2 of 7)",13,40715302,40730443,15142,2,Tfap2a-201,1852,Tfap2a-201;Tfap2a-202;Tfap2a-205;Tfap2a-203;Tfap2a-209;Tfap2a-208;Tfap2a-206;Tfap2a-204;Tfap2a-207,Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,13,57,21418,ENSMUSG00000021359,mapped to different genes,13,40728530,40728699,170,*,170,13,0.676470588,0.886126704,0.076470588,9.43E-09,CpGisland,TRUE,U13,Hc-P
19307,cg06124492,0.0000522,0.0000116,4.487358966,0.0000102,gain,ns,0.0000299,0.0000197,1.512472974,0.131432341,pos,ns,0.000385439,0.005785549,0.066621054,0.946926329,pos,ns,0.023683808,0.000122176,0.000198965,0.614057743,0.539627532,pos,ns,0.565771297,Rpl36a-ps1,Rpl36a-ps1_Intergenic_downstream,14,98959329,98959378,98959329,98959330,50,+,CGTAAGCAATCTGCTGGTGATTGAATAAAAGTGTCAAGAAAATGGCTGCT,Distal Intergenic,14,98993870,98994318,449,2,Rpl36a-ps1-201,34940,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,100043787,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17925,cg03234386,-0.000004,0.00000293,-1.36447735,0.173407042,loss,ns,0.00000754,0.00000498,1.512373677,0.131457578,pos,ns,0.001603682,0.00146034,1.098156553,0.272988332,pos,ns,0.563855915,-0.0000661,0.0000502,-1.316821048,0.188871238,neg,ns,0.954877263,Irx6,Irx6_Intergenic_upstream,8,92569855,92569904,92569855,92569856,50,+,CGCTAAATGCAGGATTTATAAAGATGTCTCTGCCATCCAGCCCAATTGTG,Distal Intergenic,8,92674288,92680956,6669,1,Irx6-201,-104384,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,5,64379,ENSMUSG00000031738,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23008,cg19265560,-0.00000523,0.00000161,-3.243961186,0.001307447,loss,ns,0.00000414,0.00000274,1.512284491,0.131480249,pos,ns,0.000314857,0.000802818,0.39218953,0.695187674,pos,ns,0.157897937,-0.0000464,0.0000276,-1.680535372,0.09386049,neg,ns,0.959160159,Tmco5,Tmco5_Intergenic_upstream,2,116808480,116808529,116808480,116808481,50,-,CGCCTTTGATGAATGCTCTCATTTATGACCACTGATGCCGCTCACTTAAT,Distal Intergenic,2,116878691,116892181,13491,1,Tmco5-202,-70211,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,14,67356,ENSMUSG00000027355,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10206,cg10187384,0.00000215,0.0000025,0.861050828,0.389875537,gain,ns,0.00000643,0.00000425,1.512135402,0.131518154,pos,ns,0.001016193,0.001245301,0.816022191,0.415114016,pos,ns,0.381832603,0.000014,0.0000428,0.327645979,0.743400513,pos,ns,0.935645325,Chd8,Chd8_Exon,14,52236863,52236912,52236863,52236864,50,+,CGCTGAACAGCAGCCTGGTTCCCAGGGACCTTGGCGGCCAACACTGTATT,Promoter (<=1kb),14,52198151,52237572,39422,2,Chd8-201,660,Chd8-201;Chd8-212;Chd8-213,Chd8;Chd8;Chd8,0;0;7597,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,12,67772,ENSMUSG00000053754,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26291,cg20312874,0.0000123,0.00000487,2.525707061,0.012044627,gain,ns,-0.0000125,0.00000827,-1.512105197,0.131525834,neg,ns,-0.005714022,0.002423812,-2.357452147,0.019022056,neg,ns,1.72074255,0.000228225,0.0000834,2.737992649,0.006538792,pos,ns,0.89559447,Ralgapa2,Ralgapa2_Intron,2,146290949,146290998,146290997,146290998,50,-,TGTACGAATCCAGACACCATATGCCATGCGAAGGCCTATTACTTTATTCG,"Intron (Ralgapa2-202/Ralgapa2, intron 38 of 40)",2,146239879,146512004,272126,2,Ralgapa2-202,221006,Ralgapa2-202;Ralgapa2-211;Ralgapa2-210;Ralgapa2-205;Ralgapa2-208,Ralgapa2;Ralgapa2;Ralgapa2;Ralgapa2;Ralgapa2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,26,241694,ENSMUSG00000037110,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13759,cg10210062,-0.000000334,0.00000739,-0.045163073,0.964006406,loss,ns,-0.000019,0.0000126,-1.512102974,0.1315264,neg,ns,-0.00914272,0.003680404,-2.484161963,0.013513524,neg,ns,1.869231391,0.000346418,0.000126569,2.736989949,0.006558275,pos,ns,0.856561811,Map3k20,Map3k20_Exon,2,72389477,72389526,72389525,72389526,50,-,CATCATTCAAGCAAATCATTTCAATCCTGGAGTCCATGTCAAATGACACG,"Exon (Map3k20-201/Map3k20, exon 10 of 20)",2,72285637,72442610,156974,1,Map3k20-201,103840,Map3k20-201;Map3k20-204;Map3k20-202;Map3k20-206,Map3k20;Map3k20;Map3k20;Map3k20,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,18,65964,ENSMUSG00000004085,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25181,cg08534805,-0.00000361,0.00000448,-0.805698477,0.421034307,loss,ns,0.0000115,0.00000761,1.51201929,0.131547681,pos,ns,0.0019334,0.002230474,0.866811311,0.386715825,pos,ns,0.412608056,-0.0000145,0.0000767,-0.189535779,0.849796954,neg,ns,0.847008019,Tent5b,Tent5b_Exon,4,133486624,133486673,133486624,133486625,50,+,CGCAGTCCCGAGGAGATCCGAGGTGGTGGCCTCCTCAAGTACTGCCACCT,"Exon (Tent5b-201/Tent5b, exon 2 of 2)",4,133480132,133487938,7807,1,Tent5b-201,6492,Tent5b-201;Trnp1-202;Trnp1-201,Tent5b;Trnp1;Trnp1,0;11877;11046,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,100342,ENSMUSG00000046694,conserved gene and region,4,133486289,133486936,648,*,648,43,0.601851852,0.735120304,0.066358025,3.61E-25,CpGisland,TRUE,U11,Tr-P
13865,cg07367585,-0.000000107,0.00000244,-0.043986005,0.964943878,loss,ns,0.00000627,0.00000414,1.512008952,0.13155031,pos,ns,0.002079652,0.001214232,1.712730167,0.087762092,pos,ns,1.056693035,-0.0000605,0.0000418,-1.449483254,0.14821354,neg,ns,0.945039961,Ola1,Ola1_Intron,2,73128067,73128116,73128115,73128116,50,+,GGTTTGCATTTATTTTGCTCTTTAGAATGGGACACTTGCTGTGCCACACG,"Intron (Ola1-201/Ola1, intron 7 of 10)",2,73092801,73214447,121647,2,Ola1-201,86331,Gm13666-201;Ola1-201;Ola1-206;Ola1-203,Gm13666;Ola1;Ola1;Ola1,-3629;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,19,67059,ENSMUSG00000027108,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5998,cg05968022,0.0000834,0.0000183,4.560703269,0.00000735,gain,ns,-0.000047,0.0000311,-1.51199495,0.131553871,neg,ns,0.012668158,0.009099908,1.3921193,0.164884146,pos,ns,0.782821102,-0.000800344,0.000312945,-2.557457635,0.011019728,neg,ns,0.196830877,Ube2d2a,Ube2d2a_Intron,18,35814825,35814874,35814825,35814826,50,-,CGATCGCCATTGATTGTCCCTGACGAGCTGCTCCACTTTCCAGCCAATGT,"Intron (Gm50371-201/Gm50371-201, intron 4 of 4)",18,35801307,35809494,8188,1,Ube2d2a-209,13567,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,3,56550,ENSMUSG00000091896,mapped to different genes,18,35814741,35814849,109,*,109,14,0.752293578,0.992843201,0.128440367,1.34E-12,CpGisland,TRUE,U6,En-Sp
11797,cg01206957,-0.00000445,0.00000153,-2.898052433,0.004022511,loss,ns,0.00000394,0.00000261,1.511894373,0.131579452,pos,ns,0.001975256,0.000763489,2.587145714,0.010132601,pos,ns,1.994279044,-0.000072,0.0000263,-2.741813899,0.006465021,neg,ns,0.960856313,Mbnl1,Mbnl1_Exon,3,60622183,60622232,60622183,60622184,50,+,CGCAGCAACAACATCTGCCACAAGTGTTCCCTTCGCTGCAACAGCCACAG,"Exon (Mbnl1-211/Mbnl1, exon 7 of 9)",3,60473079,60628200,155122,1,Mbnl1-211,149104,Mbnl1-216;Mbnl1-211;Mbnl1-201;Mbnl1-202;Mbnl1-203;Mbnl1-218;Mbnl1-219;Mbnl1-214;Mbnl1-207;Mbnl1-205;Mbnl1-212;Mbnl1-215;Mbnl1-223;Mbnl1-213,Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,19,36,56758,ENSMUSG00000027763,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
949,cg27074648,-0.00000194,0.00000202,-0.957690668,0.338965046,loss,ns,0.00000519,0.00000343,1.511699283,0.131629083,pos,ns,0.002790029,0.001005968,2.773477395,0.005882099,pos,ns,2.230467681,-0.0000985,0.0000346,-2.846345502,0.004717264,neg,ns,0.966397007,Taf3,Taf3_Intron,2,9945446,9945495,9945446,9945447,50,-,CGGCCTTGCAAAAAATGAAAATCGCTCAAGAGATTTAAAGGGGAAATTTA,"Intron (Taf3-201/Taf3, intron 3 of 6)",2,9914552,10048596,134045,2,Taf3-201,103101,Taf3-201;Taf3-204;Taf3-205,Taf3;Taf3;Taf3,0;0;-3695,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,7,209361,ENSMUSG00000025782,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15930,cg17230408,-0.0000264,0.00000642,-4.117216761,0.0000492,loss,ns,-0.0000165,0.0000109,-1.51167826,0.131634432,neg,ns,-0.00639876,0.003194735,-2.002907856,0.046057561,neg,ns,1.336699064,0.000288813,0.000109867,2.628755836,0.00899677,pos,ns,0.89759157,Haao,Haao_Intergenic_upstream,17,83889974,83890023,83889974,83889975,50,+,CGGTGTTTATGTGAATGCACAAATGTTTATGTGAGATTGCCAACCGGTTA,Distal Intergenic,17,83837173,83847963,10791,2,Haao-205,-42011,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,6,107766,ENSMUSG00000000673,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16814,cg14224903,-0.00000105,0.00000158,-0.662575738,0.508094615,loss,ns,0.00000406,0.00000269,1.511583444,0.131658559,pos,ns,0.000660559,0.000786653,0.839708873,0.40171875,pos,ns,0.396077897,-0.00000547,0.0000271,-0.202216032,0.839880482,neg,ns,0.955364974,Gm8504,Gm8504_Intergenic_upstream,12,86594308,86594357,86594308,86594309,50,+,CGGCAGGACTTTTTATTACTCTTAGATGGTGTTCAGAAGGCCCATAAATA,Distal Intergenic,12,86650573,86651662,1090,1,Gm8504-201,-56216,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,8,667191,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
602,cg08871010,0.00000274,0.00000626,0.43831729,0.661461577,gain,ns,0.0000161,0.0000106,1.511505447,0.131678409,pos,ns,0.002531591,0.003116742,0.812255599,0.417268276,pos,ns,0.379584633,-0.0000257,0.000107184,-0.239704245,0.810717959,neg,ns,0.835791812,Clcn5,Clcn5_Exon,X,7161717,7161766,7161765,7161766,50,-,ACAGTCATACTGTCCTGAGTAAGGACAGTCAACAAAGGATCATTTCTCCG,"Exon (Clcn5-201/Clcn5, exon 10 of 12)",20,7153810,7188714,34905,2,Clcn5-201,26948,Clcn5-201;Clcn5-202;Clcn5-205,Clcn5;Clcn5;Clcn5,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,12728,ENSMUSG00000004317,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6152,cg25056897,0.0000272,0.00000619,4.400440942,0.0000149,gain,ns,0.0000159,0.0000105,1.511288594,0.13173361,pos,ns,0.001340532,0.003078806,0.435406581,0.663570328,pos,ns,0.178113042,0.000109459,0.00010588,1.033802238,0.30203443,pos,ns,0.769713337,Nrg2,Nrg2_Intron,18,36153757,36153806,36153757,36153758,50,+,CGGGCAGGCAGGCGGAATGATTCTGGGTGAAGGAACATTGTAAATGTTGT,"Intron (Nrg2-203/Nrg2, intron 1 of 9)",18,36017652,36197380,179729,2,Nrg2-203,43574,Nrg2-203;Nrg2-201,Nrg2;Nrg2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,20,100042150,ENSMUSG00000060275,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2421,cg02550277,0.0000112,0.00000633,1.767893339,0.078062351,gain,ns,0.0000162,0.0000107,1.511161829,0.131765887,pos,ns,0.006721295,0.003148302,2.134895359,0.033553456,pos,ns,1.47426274,-0.0000566,0.00010827,-0.522533674,0.601672025,neg,ns,0.127373668,Olig3,Olig3_Promoter,10,19356218,19356267,19356218,19356219,50,+,CGGCCCCACAATGAATATGAATAGGAATCCTTGCTAAATGGGACAGCAAA,Promoter (<=1kb),10,19356533,19358604,2072,1,Olig3-201,-266,Olig3-201,Olig3,-266,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,9,94222,ENSMUSG00000045591,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
18620,cg15508321,0.0000658,0.0000123,5.361407218,0.000000162,gain,yes,-0.0000315,0.0000209,-1.511073957,0.131788265,neg,ns,0.019008505,0.006110988,3.110545276,0.002041042,pos,ns,2.690147956,-0.000418812,0.000210156,-1.992858804,0.047153341,neg,ns,0.224425492,Hoxb3,Hoxb3_Intron,11,96334694,96334743,96334694,96334695,50,-,CGAGGTTTCAGTGAAGTAAATTGATATTAATGGGAGTTTCTTGAAATGCA,"Intron (Hoxb3-202/Hoxb3, intron 1 of 3)",11,96323326,96347930,24605,1,Hoxb3-202,11368,Hoxb3-202;Hoxb3-203,Hoxb3;Hoxb3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,19,15410,ENSMUSG00000048763,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
27854,cg13780290,-0.000025,0.00000747,-3.349727854,0.000908828,loss,ns,0.0000192,0.0000127,1.511020891,0.13180178,pos,ns,-0.000643697,0.003719514,-0.173059418,0.862717663,neg,ns,0.06413131,-0.0000411,0.000127914,-0.321681256,0.747910973,neg,ns,0.838658931,Ush2a,Ush2a_Intron,1,188568479,188568528,188568479,188568480,50,-,CGCCCACAGATTAACATAATGAAGGAGAACAGATTACAGTGGATGCCGGC,"Intron (Ush2a-201/Ush2a, intron 29 of 70)",1,188263034,188965041,702008,1,Ush2a-201,305445,Ush2a-201;Ush2a-204,Ush2a;Ush2a,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,33,36,22283,ENSMUSG00000026609,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
100,cg23717490,-0.00000852,0.00000277,-3.074569465,0.002295613,loss,ns,-0.00000711,0.00000471,-1.510755964,0.13186927,neg,ns,-0.002882668,0.001378543,-2.091096716,0.037333269,neg,ns,1.427903986,-0.0000322,0.0000474,-0.679876281,0.497090179,neg,ns,0.931981257,Crebbp,Crebbp_Exon,16,4137450,4137499,4137498,4137499,50,+,TGATTTGTCGTGAAGATGCACAATGGGCAACTATGACCAGAAAAACAACG,"Exon (Crebbp-201/Crebbp, exon 5 of 31)",16,4081328,4213997,132670,2,Crebbp-201,76498,Crebbp-201;Crebbp-205,Crebbp;Crebbp,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,7,12914,ENSMUSG00000022521,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21959,cg14511200,-0.00000115,0.00000198,-0.582357083,0.56074949,loss,ns,0.00000509,0.00000337,1.510257326,0.131996371,pos,ns,0.001418549,0.000986901,1.4373774,0.15161937,pos,ns,0.819245314,-0.0000332,0.0000339,-0.978381679,0.328648479,neg,ns,0.950972761,Ntng1,Ntng1_threeUTR,3,109832621,109832670,109832621,109832622,50,-,CGAAGCATTCACAATCTTGCAAGGAAGAACAGAAATGTATACAGAGTGTA,3' UTR,3,109780040,110143004,362965,2,Ntng1-211,310334,Ntng1-211;Ntng1-208;Ntng1-206;Ntng1-202;Ntng1-203;Ntng1-204;Ntng1-205;Ntng1-207;Ntng1-209;Ntng1-210;Ntng1-213;Ntng1-212,Ntng1;Ntng1;Ntng1;Ntng1;Ntng1;Ntng1;Ntng1;Ntng1;Ntng1;Ntng1;Ntng1;Ntng1,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,7,80883,ENSMUSG00000059857,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20795,cg01353533,0.0000957,0.0000156,6.151151221,2.37E-09,gain,yes,-0.0000399,0.0000264,-1.510003921,0.132060999,neg,ns,0.019617307,0.007741085,2.534180557,0.011763113,pos,ns,1.929477719,-0.001199274,0.000266215,-4.504903001,0.00000942,neg,ns,0.598854481,Them7,Them7_Intron,2,105334213,105334262,105334213,105334214,50,+,CGAATGAATGGATTGACTATGTAAAACTGTTTGATATTGAAACAACTCCT,"Intron (Them7-201/Them7, intron 3 of 3)",2,105224320,105379796,155477,1,Them7-201,109893,Them7-201;Them7-202,Them7;Them7,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,7,74088,ENSMUSG00000055312,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19531,cg02677805,-0.0000156,0.00000896,-1.739763813,0.082892976,loss,ns,0.000023,0.0000152,1.50973735,0.132129012,pos,ns,-0.002453256,0.004457028,-0.55042419,0.58242486,neg,ns,0.234760096,0.0000775,0.000153277,0.50547139,0.613586985,pos,ns,0.6687084,Pja1,Pja1_Intergenic_upstream,X,99578697,99578746,99578697,99578698,50,-,CGCCCCTGGGAGCCAGCTCTGCACTCTTAATAGATCTTACGGTTAAGAAG,Distal Intergenic,20,99465734,99471273,5540,2,Pja1-203,-107473,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,17,18744,ENSMUSG00000034403,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14562,cg03849023,0.000319144,0.0000391,8.152632912,8.91E-15,gain,yes,-0.0001004,0.0000665,-1.509680715,0.132143465,neg,ns,0.03302198,0.019483456,1.694872872,0.091103736,pos,ns,1.040463811,-0.00372874,0.000670034,-5.564997161,5.68E-08,neg,yes,0.320044725,Tsc22d1,Tsc22d1_Intron,14,76505820,76505869,76505820,76505821,50,-,CGTTCTTTGTTATTGGAGCAGCGCCTGTGGCTCTTCTCACGGGATTCTCT,"Intron (Tsc22d1-204/Tsc22d1, intron 4 of 4)",14,76414961,76507762,92802,1,Tsc22d1-204,90859,Tsc22d1-204;Tsc22d1-202;Tsc22d1-207;Tsc22d1-208;Tsc22d1-203;Tsc22d1-214;Tsc22d1-201;Tsc22d1-206;Tsc22d1-205,Tsc22d1;Tsc22d1;Tsc22d1;Tsc22d1;Tsc22d1;Tsc22d1;Tsc22d1;Tsc22d1;Tsc22d1,0;0;0;0;0;0;0;1290;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,Intron,6,10,21807,ENSMUSG00000022010,conserved gene and region,14,76505732,76505860,129,*,129,9,0.519379845,1.040322581,0.069767442,0.00000752,CpGisland,TRUE,U1,Pr-A
5030,cg24740850,0.0000962,0.000012,8.032724954,2.01E-14,gain,yes,-0.0000307,0.0000203,-1.509616564,0.132159838,neg,ns,0.017853703,0.005959617,2.995780165,0.002958289,pos,ns,2.528959387,-0.000762062,0.000204951,-3.718270936,0.000238006,neg,ns,0.139152577,Cpeb4,Cpeb4_Exon,11,31873063,31873112,31873111,31873112,50,+,CACCCTTCACACATAGAAATGCTGCTTTTAACCAGCTGCCTCATTTGGCG,Promoter (<=1kb),11,31872211,31931577,59367,1,Cpeb4-201,852,Cpeb4-201;Cpeb4-202;Cpeb4-203,Cpeb4;Cpeb4;Cpeb4,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,10,67579,ENSMUSG00000020300,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
11312,cg02456288,0.0000663,0.00000524,12.66714738,6.42E-30,gain,yes,-0.0000134,0.0000089,-1.509445313,0.132203553,neg,ns,0.01080101,0.002606586,4.143738096,0.0000441,pos,ns,4.355299837,-0.00038284,0.0000896,-4.270853062,0.0000259,neg,ns,0.094773953,Foxa1,Foxa1_Intergenic_downstream,12,57535133,57535182,57535133,57535134,50,-,CGTTGGCCAAGCACAATTGTGTTATTGGAGATAATGAATTCAATCCCCAT,Distal Intergenic,12,57540628,57546121,5494,2,Foxa1-201,10988,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,7,15375,ENSMUSG00000035451,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
9261,cg07483830,-0.0000111,0.00000417,-2.672230441,0.007933355,loss,ns,0.0000107,0.00000708,1.509220123,0.132261054,pos,ns,-0.001767312,0.002073934,-0.852154712,0.394786074,neg,ns,0.403638175,-0.0000255,0.0000713,-0.356949158,0.721372722,neg,ns,0.925630925,Foxp4,Foxp4_Intron,17,47872411,47872460,47872459,47872460,50,+,TGCCTCTAATTAAATCCTGTGTATTTTTCCGACTCGCTTGCTAATCCACG,"Intron (Foxp4-204/Foxp4, intron 13 of 16)",17,47867133,47924645,57513,2,Foxp4-204,52185,Foxp4-204;Foxp4-203;Foxp4-201;Foxp4-202,Foxp4;Foxp4;Foxp4;Foxp4,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,25,74123,ENSMUSG00000023991,conserved gene and region,17,47872440,47872721,282,*,282,26,0.563829787,1.163809524,0.092198582,3.73E-19,CpGisland,TRUE,U10,Tr-S
497,cg25422966,0.0000125,0.0000043,2.900575338,0.003991132,gain,ns,-0.000011,0.00000731,-1.509022165,0.132311618,neg,ns,0.000285927,0.002140458,0.1335821,0.893819714,pos,ns,0.048750071,0.0000524,0.0000736,0.711887263,0.477069973,pos,ns,0.79944034,Ccm2,Ccm2_Exon,11,6570092,6570141,6570092,6570093,50,-,CGAGCCAGACAGACTGCTGAGCGACTATATTGAGAAGGAGGTAAAGGTAA,"Exon (Ccm2-201/Ccm2, exon 2 of 10)",11,6546887,6596744,49858,1,Ccm2-201,23205,Ccm2-201;Ccm2-205;Ccm2-203;Ccm2-207;Ccm2-206;Ccm2-202,Ccm2;Ccm2;Ccm2;Ccm2;Ccm2;Ccm2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,216527,ENSMUSG00000000378,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1348,cg03830740,-0.00000695,0.00000421,-1.653419112,0.099257859,loss,ns,0.0000108,0.00000714,1.508722832,0.132388104,pos,ns,0.003045686,0.002093192,1.45504367,0.146669006,pos,ns,0.833661652,-0.000135473,0.000072,-1.881972033,0.060776465,neg,ns,0.919451573,Mindy3,Mindy3_threeUTR,2,12401043,12401092,12401043,12401044,50,-,CGCTCAAAGCCAAGCTCTTCGACAGCCAAGGCAGCTATACATAAAAGACA,3' UTR,2,12347263,12419435,72173,2,Mindy3-216,18343,Mindy3-216;Mindy3-205;Mindy3-214;Mindy3-217;Mindy3-201;Mindy3-211;Mindy3-210;Mindy3-218;Mindy3-203;Mindy3-208;Mindy3-206;Mindy3-204;Mindy3-207;Mindy3-213;Mindy3-202;Mindy3-212;Mindy3-215,Mindy3;Mindy3;Mindy3;Mindy3;Mindy3;Mindy3;Mindy3;Mindy3;Mindy3;Mindy3;Mindy3;Mindy3;Mindy3;Mindy3;Mindy3;Mindy3;Mindy3,0;0;0;0;0;0;-3158;0;0;0;0;0;0;0;0;0;3637,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,2,66960,ENSMUSG00000026767,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11282,cg26364230,0.00011127,0.00000919,12.10958143,6.71E-28,gain,yes,-0.0000236,0.0000156,-1.508662645,0.132403488,neg,ns,0.002115972,0.00457326,0.462683511,0.643915841,pos,ns,0.19117089,0.000139753,0.000157274,0.888596019,0.374909198,pos,ns,0.242591931,Hand2,Hand2_Exon,8,57320049,57320098,57320049,57320050,50,+,CGATAACTAAACCTGCTTTCCACAGATGCCCGCTTTTATGAGGGAGGCAG,Promoter (<=1kb),8,57320983,57324633,3651,1,Hand2-201,-885,Hand2-201,Hand2,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,9,15111,ENSMUSG00000038193,mapped to different genes,8,57319807,57320080,274,*,274,15,0.547445256,0.757045496,0.054744526,4.86E-08,CpGisland,TRUE,NA,NRS
8779,cg04645545,0.0000956,0.00000868,11.00259044,5.45E-24,gain,yes,-0.0000223,0.0000148,-1.508621728,0.132413947,neg,ns,0.010755473,0.00432253,2.488235652,0.013362769,pos,ns,1.874103541,-0.000148914,0.000148651,-1.001767487,0.317237201,neg,ns,0.163154686,Fgf8,Fgf8_fiveUTR,19,45741525,45741574,45741573,45741574,50,+,GCGTTGATGCGCTTGTTGGCCAGGACCTGCACGTGCTTCCCGCTGGTGCG,5' UTR,19,45736798,45742874,6077,2,Fgf8-201,1300,Fgf8-201;Fgf8-206;Fgf8-202;Fgf8-205;Fgf8-203;Fgf8-204,Fgf8;Fgf8;Fgf8;Fgf8;Fgf8;Fgf8,0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,18,14179,ENSMUSG00000025219,conserved gene and region,19,45741448,45741621,174,*,174,14,0.643678161,0.780769231,0.08045977,1.09E-09,CpGisland,TRUE,U13,Hc-P
20898,cg23541754,0.0000875,0.00000726,12.04436449,1.15E-27,gain,yes,-0.0000186,0.0000123,-1.508349255,0.13248361,neg,ns,0.002979453,0.003614223,0.824368693,0.410363923,pos,ns,0.386830827,0.000103224,0.000124293,0.830492302,0.406899635,pos,ns,0.191266917,Pax6,Pax6_Exon,2,105684981,105685030,105684981,105684982,50,-,CGACTCCAGAAGTTGTAAGCAAAATAGCCCAGTATAAGCGGGAGTGCCCG,"Exon (Pax6-206/Pax6, exon 6 of 13)",2,105668900,105697364,28465,1,Pax6-206,16081,Pax6-206;Pax6-207;Pax6-210;Pax6-214;Pax6-208;Pax6-202;Pax6-205;Pax6-225;Pax6-204;Pax6-201;Pax6-203;Pax6-224;Pax6-219;Pax6-221;Pax6-213;Pax6-211;Pax6-222;Pax6-212;Pax6-215;Pax6-223;Pax6-209;Pax6-216,Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,Exon,31,78,18508,ENSMUSG00000027168,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
4545,cg15772090,0.00000157,0.00000153,1.025537054,0.305909415,gain,ns,-0.00000392,0.0000026,-1.508201926,0.13252129,neg,ns,-0.00106174,0.000760926,-1.395325853,0.163916341,neg,ns,0.785377749,0.0000176,0.0000262,0.673432303,0.50117406,pos,ns,0.96146941,Tnpo3,Tnpo3_threeUTR,6,29571029,29571078,29571077,29571078,50,+,CACTCACGGATCAACACTCTTTGCTATAGCAGCCATGATAAAGAGAACCG,3' UTR,6,29540827,29609607,68781,2,Tnpo3-202,38529,Tnpo3-202;Tnpo3-201;Tnpo3-207;Tnpo3-206;Tnpo3-211,Tnpo3;Tnpo3;Tnpo3;Tnpo3;Tnpo3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,2,320938,ENSMUSG00000012535,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17183,cg05693178,0.00000697,0.00000589,1.185004914,0.236923142,gain,ns,-0.0000151,0.00001,-1.508130684,0.132539513,neg,ns,0.002708661,0.002929063,0.9247533,0.355813529,pos,ns,0.448777543,-0.000209006,0.00010073,-2.074904546,0.038820048,neg,ns,0.746630087,Ano4,Ano4_threeUTR,10,89068157,89068206,89068205,89068206,50,+,GGCAGTGTCTCCTTGTCCAGCCTCATTGGCTTCTTAGGTAACCATCTCCG,3' UTR,10,88948994,89257790,308797,2,Ano4-206,189584,Ano4-206;Ano4-204;Ano4-208;Ano4-210;Ano4-203;Ano4-205;Ano4-212;Ano4-202,Ano4;Ano4;Ano4;Ano4;Ano4;Ano4;Ano4;Ano4,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,8,9,320091,ENSMUSG00000035189,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18017,cg24606107,0.0000182,0.000013,1.40559017,0.160847272,gain,ns,0.0000333,0.000022,1.508112744,0.132544102,pos,ns,0.009811895,0.006459606,1.51896199,0.129791253,pos,ns,0.886754575,0.000182777,0.000222145,0.82277988,0.411265626,pos,ns,0.736764199,Pola1,Pola1_Intron,X,93310401,93310450,93310449,93310450,50,+,GGCTCCCAGCAGGTGGAGCATTTAAAATAAATAGCATTTCCTACAAAACG,"Intron (Pola1-201/Pola1, intron 36 of 36)",20,93304767,93632155,327389,2,Pola1-201,321705,Pola1-201,Pola1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,59,62,18968,ENSMUSG00000006678,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16914,cg11951461,-0.0000151,0.00000549,-2.75824565,0.006156297,loss,ns,-0.0000141,0.00000932,-1.50789086,0.132600873,neg,ns,-0.005280222,0.002730376,-1.933880536,0.054037861,neg,ns,1.267301848,0.000123324,0.0000939,1.313392352,0.190022031,pos,ns,0.859803676,Sptlc2,Sptlc2_Exon,12,87369036,87369085,87369084,87369085,50,+,CGTGAGCACAGCAACCAGCATTGGTGTTTCTTCAAAAGCTTCATTAAACG,"Exon (Sptlc2-201/Sptlc2, exon 2 of 12)",12,87305058,87388355,83298,2,Sptlc2-201,19270,Gm48806-201;Sptlc2-201;Sptlc2-202,Gm48806;Sptlc2;Sptlc2,-2907;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,20773,ENSMUSG00000021036,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25464,cg15835497,-0.00000906,0.00000418,-2.166733628,0.03101666,loss,ns,0.0000107,0.0000071,1.507783169,0.132628433,pos,ns,-0.000552787,0.002080398,-0.265712176,0.790637506,neg,ns,0.102022587,-0.000156788,0.0000715,-2.191464922,0.02916195,neg,ns,0.905004239,Snap25,Snap25_Intron,2,136770781,136770830,136770781,136770782,50,-,CGTACACTGGCTGAAATGTTGAAATGTGTAGATTTTGCATGCACAACATC,"Intron (Snap25-201/Snap25, intron 5 of 7)",2,136713453,136782428,68976,1,Snap25-201,57328,Snap25-201;Snap25-202,Snap25;Snap25,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,9,20614,ENSMUSG00000027273,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23003,cg09853924,-0.00000344,0.00000798,-0.430916901,0.666828266,loss,ns,0.0000204,0.0000136,1.507751533,0.13263653,pos,ns,-0.000114433,0.00397291,-0.02880322,0.977040066,neg,ns,0.010087626,0.000239099,0.000136628,1.749998676,0.081107927,pos,ns,0.82149931,Tmco5,Tmco5_Intergenic_upstream,2,116768612,116768661,116768612,116768613,50,+,CGGTCTATGCAGTCTGCTGCCTCATTACAGAACTAGCTATCTGCAGGAAG,Distal Intergenic,2,116878691,116892181,13491,1,Tmco5-202,-110030,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,14,67356,ENSMUSG00000027355,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4187,cg07765418,-0.000018,0.00000551,-3.271053613,0.001192212,loss,ns,0.0000141,0.00000935,1.507729683,0.132642123,pos,ns,0.001864646,0.002740082,0.680507215,0.496691284,pos,ns,0.303913461,-0.0000794,0.0000942,-0.842611413,0.400095426,neg,ns,0.908804154,Grm4,Grm4_Exon,17,27361261,27361310,27361261,27361262,50,-,CGTGATATTAATTGTAGTAATTAGTAGTCACTTTGTGTTGGAGTCATCTA,"Exon (Gm49794-201/Gm49794-201, exon 1 of 2)",17,27451629,27473067,21439,2,Grm4-204,111806,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,5,268934,ENSMUSG00000063239,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1530,cg22701330,-0.00000916,0.00000468,-1.958719879,0.051041899,loss,ns,0.000012,0.00000795,1.507722523,0.132643956,pos,ns,0.004113112,0.002328083,1.766737772,0.078256155,pos,ns,1.106481493,-0.000164682,0.0000801,-2.05691468,0.040530885,neg,ns,0.905974779,Ralyl,Ralyl_Intergenic_upstream,3,13457233,13457282,13457281,13457282,50,+,CAATTATCTCATGGTTCAGGGAGTTGTTGGGTTTTAAATGGATACTCCCG,Distal Intergenic,3,13471655,13777103,305449,1,Ralyl-204,-14373,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,2,76897,ENSMUSG00000039717,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10700,cg06214109,-0.0000066,0.0000162,-0.40760793,0.683842883,loss,ns,-0.0000415,0.0000275,-1.507596525,0.13267621,neg,ns,-0.011872025,0.008057271,-1.473454834,0.141643095,neg,ns,0.848804591,0.000304385,0.000277089,1.09850878,0.272834826,pos,ns,0.345891017,Zfp608,Zfp608_Intron,18,54990451,54990500,54990499,54990500,50,+,ATCTGGGCTGGATTCCGCCTGTTAGTCGGGAAGTGGCATTTTTCCGCCCG,"Intron (Gm4221-203/Gm4221-203, intron 1 of 1)",18,54888723,54992555,103833,2,Zfp608-203,2055,Zfp608-201;Zfp608-203,Zfp608;Zfp608,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,32,269023,ENSMUSG00000052713,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
12788,cg21988562,-0.00000114,0.00000331,-0.345810659,0.729719573,loss,ns,0.00000847,0.00000562,1.507526084,0.132694244,pos,ns,0.001788599,0.001645129,1.087208845,0.27778912,pos,ns,0.556284767,0.0000111,0.0000566,0.196774136,0.844133234,pos,ns,0.976060687,Rsrc1,Rsrc1_Intron,3,67191664,67191713,67191664,67191665,50,-,CGCTTAATCTTAATGGTATCTGTGGATGTCAAGGGCATGGAGGAAATTAA,"Intron (Rsrc1-206/Rsrc1, intron 5 of 9)",3,66981390,67356559,375170,1,Rsrc1-206,210274,Rsrc1-206;Rsrc1-203;Rsrc1-202;Rsrc1-201;Rsrc1-209;Rsrc1-205,Rsrc1;Rsrc1;Rsrc1;Rsrc1;Rsrc1;Rsrc1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,37,66880,ENSMUSG00000034544,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7484,cg00078463,0.0000179,0.00002,0.895821245,0.371043315,gain,ns,-0.0000511,0.0000339,-1.507498855,0.132701216,neg,ns,0.004762419,0.009937685,0.479228162,0.632114201,pos,ns,0.199204452,-0.000357937,0.000341756,-1.047345859,0.295755991,neg,ns,0.796173282,Hpse2,Hpse2_Exon,19,42788978,42789027,42789026,42789027,50,-,TTCTTGACCACATAAAAGCCCATGGTGACTGGAGGGATGACCAATGTCCG,"Exon (Hpse2-201/Hpse2, exon 12 of 12)",19,42786539,43388355,601817,2,Hpse2-201,599328,Hpse2-201,Hpse2,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,6,545291,ENSMUSG00000074852,conserved gene but different region,19,42789026,42789073,48,*,48,7,0.770833333,1,0.145833333,0.000000957,CpGisland,TRUE,U11,Tr-P
10332,cg02053367,0.000105491,0.0000194,5.435619312,0.000000111,gain,yes,-0.0000497,0.000033,-1.507408101,0.132724456,neg,ns,0.019720707,0.009659273,2.041634679,0.042034063,pos,ns,1.376398626,-0.000507735,0.000332182,-1.528487007,0.12741136,neg,ns,0.363677011,Mstn,Mstn_Exon,1,53064077,53064126,53064077,53064078,50,+,CGATCTCTGAAACTTGACATGAACCCAGGCACTGGTATTTGGCAGAGCAT,"Exon (Mstn-201/Mstn, exon 2 of 3)",1,53061640,53068079,6440,1,Mstn-201,2437,Mstn-201;Mstn-202,Mstn;Mstn,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,17700,ENSMUSG00000026100,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20515,cg24791960,0.0000769,0.0000149,5.174676696,0.000000411,gain,yes,0.0000381,0.0000253,1.507225943,0.13277111,pos,ns,0.070050777,0.007401002,9.465039411,7.71E-19,pos,yes,18.11279049,-0.000226144,0.00025452,-0.888513765,0.374953352,neg,ns,0.747572278,Slc35d1,Slc35d1_Exon,4,103213191,103213240,103213191,103213192,50,-,CGTGATTTGGTTCCCAAAATATAGTAGAGGTAGTGGAAACGTCTAGAAAA,"Exon (Slc35d1-203/Slc35d1, exon 4 of 10)",4,103170649,103215164,44516,2,Slc35d1-203,1924,Slc35d1-203;Slc35d1-201;Slc35d1-205;Slc35d1-202;Slc35d1-204,Slc35d1;Slc35d1;Slc35d1;Slc35d1;Slc35d1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,242585,ENSMUSG00000028521,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12986,cg25195334,-0.00000181,0.00000384,-0.470911586,0.638035064,loss,ns,-0.00000983,0.00000652,-1.507041257,0.132818425,neg,ns,-0.003685426,0.001911227,-1.928304057,0.05473036,neg,ns,1.261771694,0.0000868,0.0000657,1.320569718,0.187618969,pos,ns,0.480830138,Stc1,Stc1_Intron,14,69030406,69030455,69030454,69030455,50,-,CACTTCCTTTTGTACTTAGTTGCTATAGAGATGCAGTGATTCACAATTCG,"Intron (Stc1-201/Stc1, intron 1 of 3)",14,69029238,69041804,12567,1,Stc1-201,1168,Stc1-201,Stc1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,9,20855,ENSMUSG00000014813,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
11681,cg04354551,-0.00000151,0.00000325,-0.464210564,0.642822716,loss,ns,0.00000833,0.00000553,1.507002056,0.132828469,pos,ns,0.004946608,0.001619101,3.055156325,0.002444825,pos,ns,2.61175227,-0.000191509,0.0000557,-3.439406243,0.00066281,neg,ns,0.923332724,Myo9a,Myo9a_Exon,9,59907368,59907417,59907416,59907417,50,+,GATGACTATAACATACACGTCATTGCAAGTGTATTCAAACAATGGCTTCG,"Exon (Myo9a-203/Myo9a, exon 36 of 42)",9,59750896,59928866,177971,1,Myo9a-203,156472,Myo9a-203;Myo9a-205;Myo9a-206;Myo9a-208;Myo9a-204;Myo9a-202;Myo9a-201,Myo9a;Myo9a;Myo9a;Myo9a;Myo9a;Myo9a;Myo9a,0;0;0;10844;0;0;-2481,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,8,270163,ENSMUSG00000039585,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8488,cg13016214,0.000035,0.00000635,5.521557137,7.11E-08,gain,yes,-0.0000162,0.0000108,-1.506656947,0.132916923,neg,ns,-0.003868417,0.003158865,-1.224622451,0.221647276,neg,ns,0.654337602,0.000146558,0.000108633,1.349113639,0.178285034,pos,ns,0.89978344,Gm13475,Gm13475_Intergenic_upstream,2,45227424,45227473,45227424,45227425,50,-,CGCTTCTAATTTGTGGCCTTAAATTGCAAACAGAATTTCAGGAGTCGAGC,Distal Intergenic,2,45329232,45329465,234,1,Gm13475-201,-101808,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,12,21,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19546,cg10696085,0.000000128,0.00000127,0.100286454,0.920181737,gain,ns,0.00000326,0.00000216,1.506291007,0.133010767,pos,ns,0.001920115,0.000633773,3.029657313,0.002654368,pos,ns,2.576038889,-0.0000421,0.0000218,-1.932283741,0.0542354,neg,ns,0.037995228,Asic1,Asic1_Promoter,15,99664735,99664784,99664735,99664736,50,+,CGCTGGAGTCTGAAATCGGAAAGATCCCAGCTTCTGCTCCCCAGCACCTC,Promoter (5-6kb),15,99670368,99701128,30761,1,Asic1-201,-5584,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,6,11419,ENSMUSG00000023017,conserved gene and region,15,99664601,99664807,207,*,207,11,0.637681159,0.564732143,0.053140097,0.0000064,CpGisland,TRUE,NA,NRS
7334,cg01499097,-0.0000247,0.0000113,-2.195825757,0.028845057,loss,ns,0.0000288,0.0000191,1.506246924,0.133022075,pos,ns,0.009325012,0.005607481,1.662959305,0.097331229,pos,ns,1.011747793,-0.000408078,0.000192841,-2.116136831,0.035130039,neg,ns,0.23666037,Ptchd4,Ptchd4_Exon,17,42317135,42317184,42317135,42317136,50,+,CGTGCTGGATGATATTATTTCAGTGCTAGAGGATCTCAGGCAGGCTGCCG,"Exon (Ptchd4-201/Ptchd4, exon 2 of 4)",17,42315947,42505077,189131,1,Ptchd4-201,1188,Ptchd4-201;Ptchd4-203;Ptchd4-202,Ptchd4;Ptchd4;Ptchd4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,9,627626,ENSMUSG00000042256,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8721,cg06968264,-0.0000412,0.0000442,-0.932063229,0.352029178,loss,ns,-0.00011309,0.0000751,-1.506138079,0.133049999,neg,ns,-0.017621347,0.021997656,-0.801055679,0.423712943,neg,ns,0.37292827,0.000422033,0.000756498,0.557877665,0.57733057,pos,ns,0.781825826,Fbxw4,Fbxw4_Intron,19,45616033,45616082,45616033,45616034,50,+,CGCGGCCTGTTGGTCTCCCATGTTAGCTCCAAGTGACTAAGCGCAGGGTG,"Intron (Fbxw4-206/Fbxw4, intron 1 of 4)",19,45578254,45631138,52885,2,Fbxw4-206,15056,Fbxw4-206;Fbxw4-201;Fbxw4-208,Fbxw4;Fbxw4;Fbxw4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,14,30838,ENSMUSG00000040913,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19634,cg04336027,-0.0000154,0.00000563,-2.734045238,0.006615797,loss,ns,-0.0000144,0.00000957,-1.506132424,0.13305145,neg,ns,-0.002402279,0.002803609,-0.856852176,0.39218847,neg,ns,0.406505179,-0.0000908,0.0000964,-0.941671866,0.347093895,neg,ns,0.855654604,Gm28267,Gm28267_Intergenic_upstream,9,100210750,100210799,100210798,100210799,50,+,CACTCAGTGTGATAGGTTGAACAGAAGTGCACAGATGAGCACTGAAAACG,Distal Intergenic,9,100404495,100404759,265,1,Gm28267-201,-193696,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,29,29,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24321,cg13193455,0.000084,0.00000506,16.59645952,1.05E-44,gain,yes,-0.000013,0.0000086,-1.506078191,0.133065366,neg,ns,0.00486792,0.002519994,1.931719415,0.054305357,pos,ns,1.265157329,-0.0000262,0.0000867,-0.302137249,0.762750043,neg,ns,0.107674058,Pou3f1,Pou3f1_Exon,4,124658612,124658661,124658660,124658661,50,+,GAACATGTGCAAGCTCAAGCCGCTGCTCAACAAGTGGCTGGAGGAGACCG,"Exon (Pou3f1-201/Pou3f1, exon 1 of 1)",4,124656807,124660655,3849,1,Pou3f1-201,1805,Pou3f1-201,Pou3f1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,85,18991,ENSMUSG00000090125,conserved gene and region,4,124658632,124659144,513,*,513,57,0.69005848,0.934814578,0.111111111,2.50E-46,CpGisland,TRUE,NA,NRS
14038,cg19731158,-0.0000181,0.0000106,-1.703064446,0.089558294,loss,ns,0.0000271,0.000018,1.505915957,0.133106999,pos,ns,-0.005400011,0.005280477,-1.022636977,0.30727688,neg,ns,0.512470115,-0.000123532,0.000181595,-0.680262714,0.496845844,neg,ns,0.788975632,Robo2,Robo2_Intron,16,74375655,74375704,74375703,74375704,50,+,AATCTGCTGGCCCTTGGTACGAACAACACAAACTGTTGTGACTCAATTCG,"Intron (Robo2-203/Robo2, intron 1 of 27)",16,73891839,74410989,519151,2,Robo2-203,35285,Robo2-203;Robo2-210;Robo2-202;Robo2-211;Robo2-206;Robo2-209,Robo2;Robo2;Robo2;Robo2;Robo2;Robo2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,11,268902,ENSMUSG00000052516,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2752,cg06784992,-0.00000663,0.00000316,-2.098030864,0.03671162,loss,ns,-0.00000809,0.00000537,-1.50587022,0.133118739,neg,ns,0.000439245,0.001573849,0.279089586,0.78036217,pos,ns,0.107703792,-0.0000526,0.0000541,-0.971536567,0.332038583,neg,ns,0.875060109,Smarca4,Smarca4_Exon,9,21677943,21677992,21677991,21677992,50,+,TTATCCACAGAGCAGACACTGCAGCACGGGCAGCGGCAGTGCCAGCTTCG,"Exon (Smarca4-203/Smarca4, exon 24 of 27)",9,21616169,21704217,88049,1,Smarca4-201,61774,Smarca4-201;Smarca4-202;Smarca4-204;Smarca4-203,Smarca4;Smarca4;Smarca4;Smarca4,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,6,20586,ENSMUSG00000032187,conserved gene but different region,9,21677969,21678028,60,*,60,7,0.766666667,0.833333333,0.116666667,0.00000466,CpGisland,TRUE,U10,Tr-S
7592,cg00493887,-0.0000382,0.00000599,-6.37557317,6.60E-10,loss,yes,0.0000153,0.0000102,1.505631819,0.133179942,pos,ns,-0.005373559,0.002983459,-1.801117001,0.072656146,neg,ns,1.138727641,0.00000335,0.000102601,0.032634653,0.973986937,pos,ns,0.911745861,Dpysl3,Dpysl3_threeUTR,18,43363510,43363559,43363558,43363559,50,+,AGCCATCTTCCATGTAAATATCAGCATAAAAGGACTGATCATCATTGACG,3' UTR,18,43320984,43438286,117303,2,Dpysl3-204,74727,Dpysl3-204;Dpysl3-206;Dpysl3-202;Dpysl3-201,Dpysl3;Dpysl3;Dpysl3;Dpysl3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,2,22240,ENSMUSG00000024501,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1088,cg02265245,-0.00000291,0.0000104,-0.279942771,0.779708115,loss,ns,0.0000266,0.0000177,1.505630179,0.133180363,pos,ns,0.002911634,0.005171957,0.562965521,0.573865285,pos,ns,0.241190047,0.0000193,0.000177863,0.108394917,0.913752558,pos,ns,0.750563381,Gm14515,Gm14515_Intergenic_upstream,X,11551905,11551954,11551953,11551954,50,+,TAATCACTATTTTGTCAAGTTTAATTGCTGCCACTCTAACAACCCAAACG,Distal Intergenic,20,11601354,11601569,216,1,Gm14515-201,-49400,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,21,28,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13461,cg01021339,0.000000529,0.00000349,0.151869771,0.879388439,gain,ns,0.00000892,0.00000592,1.505556851,0.133199192,pos,ns,0.007399986,0.00173498,4.265170847,0.0000266,pos,ns,4.575810571,-0.000216288,0.0000597,-3.624998356,0.000337648,neg,ns,0.930041711,Xpo7,Xpo7_threeUTR,14,70664563,70664612,70664563,70664564,50,+,CGGTCACAATGCTTACACTGTATGCAGCAAACACCCTTACAAGTCTATCC,3' UTR,14,70654246,70766628,112383,2,Xpo7-202,102016,Xpo7-202;Xpo7-201;Xpo7-206;Xpo7-203,Xpo7;Xpo7;Xpo7;Xpo7,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,13,65246,ENSMUSG00000022100,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
89,cg11321895,-0.00000514,0.00000167,-3.075683178,0.002287312,loss,ns,0.00000427,0.00000284,1.505556358,0.133199319,pos,ns,0.001051899,0.000831558,1.264973856,0.206830771,pos,ns,0.684384849,-0.0000256,0.0000286,-0.895995425,0.370950427,neg,ns,0.064854307,Plag1,Plag1_fiveUTR,4,3938318,3938367,3938366,3938367,50,+,TGGAAATTGTTTCCTTACGCCTCTTTCCAGCAGCCATTGTAGTGTATGCG,Promoter (<=1kb),4,3900996,3938382,37387,2,Plag1-201,15,Chchd7-202;Chchd7-206;Chchd7-213;Chchd7-207;Chchd7-208;Chchd7-201;Chchd7-205;Chchd7-214;Chchd7-203;Chchd7-209;Chchd7-210;Chchd7-211;Chchd7-204;Plag1-201;Plag1-202;Plag1-204;Plag1-203,Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Plag1;Plag1;Plag1;Plag1,-521;-521;-523;-547;-547;-547;-547;-547;-553;-676;-1055;-1133;-2487;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,22,56711,ENSMUSG00000003282,conserved gene and region,4,3938107,3939194,1088,*,1088,119,0.706801471,0.896508745,0.109375,3.91E-95,CpGisland,TRUE,U1,Pr-A
26034,cg14893478,-0.0000049,0.00000164,-2.98313763,0.003079657,loss,ns,0.0000042,0.00000279,1.505432322,0.133231174,pos,ns,0.000361906,0.00081682,0.443066675,0.658026535,pos,ns,0.181756593,-0.0000201,0.0000281,-0.715366525,0.474921024,neg,ns,0.961963552,Gm2574,Gm2574_Intergenic_downstream,3,143322928,143322977,143322928,143322929,50,+,CGGCTGTAAATTCAGCCTGTATTCCCATTAAATGTTACGAATATGTGATT,Distal Intergenic,3,142962611,142963612,1002,1,Gm2574-201,360317,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,19,100040053,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5736,cg05338637,0.0000021,0.00000223,0.941615248,0.347122845,gain,ns,-0.0000057,0.00000379,-1.505362103,0.13324921,neg,ns,-0.003246712,0.001108878,-2.927924346,0.003665017,neg,ns,2.435923977,0.000108256,0.0000381,2.838812055,0.004827133,pos,ns,0.051427916,Sox2,Sox2_Promoter,3,34646284,34646333,34646284,34646285,50,-,CGTCAAACTCTGCTAATTAGCAATGCTGAGAAATTCCAGTTAACAAGGAC,Promoter (4-5kb),3,34650405,34652461,2057,1,Sox2-201,-4121,Sox2-201,Sox2,0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,7,62,20674,ENSMUSG00000074637,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
15747,cg10220472,-0.0000314,0.0000128,-2.453143858,0.014711794,loss,ns,-0.0000327,0.0000217,-1.505144334,0.133305158,neg,ns,-0.013625843,0.006370152,-2.139013912,0.033215567,neg,ns,1.478658325,0.000291558,0.000219069,1.330893966,0.184201933,pos,ns,0.614278274,Gm48156,Gm48156_Intron,13,83132920,83132969,83132920,83132921,50,-,CGTATTTCAAGGGAAATGCAATCCATATGTCTTTGATTCATTTACACTTA,"Intron (2310067P03Rik-201/2310067P03Rik-201, intron 3 of 3)",13,83189565,83189709,145,2,Gm48156-201,56789,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,16,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13626,cg06670018,0.0000705,0.0000142,4.948711942,0.00000123,gain,yes,0.0000364,0.0000242,1.505124005,0.133310382,pos,ns,0.015853096,0.00709165,2.235459319,0.026098991,pos,ns,1.583376288,-0.00039803,0.000243881,-1.632063681,0.103681425,neg,ns,0.327352457,Dlx1,Dlx1_Intergenic_downstream,2,71538107,71538156,71538107,71538108,50,-,CGAACGGATATAATTATCGAGGAGTCAAGATGTTATGCTAAAAACTATGC,Distal Intergenic,2,71530780,71532689,1910,1,Dlx1-206,7376,Dlx1-201;Dlx1-203,Dlx1;Dlx1,0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,36,13390,ENSMUSG00000041911,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
13572,cg14898663,-0.000005,0.0000208,-0.240189142,0.810342383,loss,ns,0.0000532,0.0000353,1.505098175,0.13331702,pos,ns,-0.009382443,0.010355867,-0.906002677,0.365638075,neg,ns,0.436948586,0.00029771,0.000356137,0.835941357,0.40383175,pos,ns,0.848023907,Nlrp1c-ps,Nlrp1c-ps_Intergenic_upstream,11,71409452,71409501,71409500,71409501,50,+,AAGGTCACCCTGTTCTTGGAATCTTTTATTAATGCTGAAGACTGGCCCCG,Distal Intergenic,11,71242430,71285232,42803,2,Nlrp1c-ps-201,-124220,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,627984,ENSMUSG00000092528,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3024,cg08920157,0.0000876,0.0000117,7.495160091,6.99E-13,gain,yes,0.0000299,0.0000199,1.5050428,0.13333125,pos,ns,0.022784423,0.005818826,3.915638852,0.00011092,pos,ns,3.954991272,-0.00011447,0.000200109,-0.5720363,0.567711952,neg,ns,0.371603354,Lrmda,Lrmda_Intron,14,22440386,22440435,22440434,22440435,50,+,AGGACATTGAAAATGTCACAGCGAGGGAATTGTTTGTCCCTGTCTCCACG,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,420674,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206;Lrmda-202,Lrmda;Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21122,cg19878742,0.000019,0.00000269,7.062401088,1.08E-11,gain,yes,-0.00000687,0.00000456,-1.505003397,0.133341377,neg,ns,0.001871491,0.001337303,1.399451523,0.162677463,pos,ns,0.788672609,-0.0000428,0.000046,-0.931674022,0.352230023,neg,ns,0.037760839,Gm3191,Gm3191_Intergenic_downstream,12,106479534,106479583,106479582,106479583,50,-,TGTCGGAATTAATGAGATCAGATCTGATCAGGGCGCTGATGTGTTCAGCG,Distal Intergenic,12,106459150,106459495,346,1,Gm3191-201,20433,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,11,13,100041191,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12344,cg20078099,-0.00000242,0.00000107,-2.264911393,0.024208199,loss,ns,0.00000274,0.00000182,1.504969153,0.133350178,pos,ns,0.000796566,0.000532667,1.495428471,0.13581994,pos,ns,0.867036464,-0.0000339,0.0000183,-1.851047254,0.065113784,neg,ns,0.970448361,Fign,Fign_threeUTR,2,63979795,63979844,63979843,63979844,50,+,TTAAATGCTAAGGATGATGTTTCAGCACTTCTGTCAAAGCCATTCCCCCG,3' UTR,2,63971507,64098012,126506,2,Fign-203,118168,Fign-203;Fign-201;Fign-202;Fign-204,Fign;Fign;Fign;Fign,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,14,84,60344,ENSMUSG00000075324,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5407,cg13324564,-0.0000174,0.00000561,-3.109598214,0.002047396,loss,ns,0.0000143,0.00000953,1.504887889,0.133371066,pos,ns,0.003728846,0.00279097,1.336039334,0.182516346,pos,ns,0.738698234,-0.000163848,0.000096,-1.707079622,0.088808566,neg,ns,0.857247087,Mvb12b,Mvb12b_Exon,2,33809770,33809819,33809770,33809771,50,+,CGTGCTTAATGAATGCCATTTAATGAAGAAAAAGGCTCTTATAAAACACC,"Exon (Nron-202/Nron-202, exon 2 of 3)",2,33729953,33887946,157994,2,Mvb12b-201,78127,Mvb12b-201;Mvb12b-204,Mvb12b;Mvb12b,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,47,72543,ENSMUSG00000038740,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2563,cg17895461,-0.0000337,0.0000191,-1.764126393,0.078695569,loss,ns,-0.0000488,0.0000324,-1.504871298,0.133375331,neg,ns,-0.03366198,0.00949483,-3.545295533,0.000452666,neg,ns,3.344221829,0.000897682,0.000326526,2.749186318,0.006324815,pos,ns,0.627063644,Pde7b,Pde7b_Intron,10,20534086,20534135,20534134,20534135,50,-,TGTGATCTTTTCTGGTATTTCCTGTTTCCTGTGAGGCCAAATATACTTCG,"Intron (Pde7b-201/Pde7b, intron 2 of 12)",10,20398004,20725078,327075,2,Pde7b-201,190943,Pde7b-201;Pde7b-204;Pde7b-205;Pde7b-206;Pde7b-202;Pde7b-207,Pde7b;Pde7b;Pde7b;Pde7b;Pde7b;Pde7b,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,4,29863,ENSMUSG00000019990,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14064,cg11806508,0.00000387,0.00000397,0.97613963,0.329756382,gain,ns,-0.0000101,0.00000674,-1.504741604,0.133408674,neg,ns,-0.001461218,0.001974297,-0.74012062,0.459786957,neg,ns,0.337443353,0.000000422,0.0000679,0.006210688,0.995048614,pos,ns,0.913310528,Zfp142,Zfp142_threeUTR,1,74569728,74569777,74569776,74569777,50,+,TAAGGCTTTTCCCCAGTGTGGATGCGGCTGTGCCAGGTGATCTTCTGTCG,3' UTR,1,74565127,74588028,22902,2,Zfp142-203,18251,Plcd4-202;Plcd4-205;Plcd4-208;Plcd4-204;Plcd4-206;Plcd4-201;Plcd4-209;Plcd4-211;Plcd4-207;Zfp142-203;Zfp142-201;Zfp142-202;Zfp142-208;Zfp142-204,Plcd4;Plcd4;Plcd4;Plcd4;Plcd4;Plcd4;Plcd4;Plcd4;Plcd4;Zfp142;Zfp142;Zfp142;Zfp142;Zfp142,26840;26840;26840;26825;26825;25364;25364;9301;5291;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,77264,ENSMUSG00000026135,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15415,cg15345525,0.0000729,0.0000174,4.179432796,0.0000381,gain,ns,-0.0000446,0.0000296,-1.504474072,0.133477473,neg,ns,0.010080381,0.008678448,1.16154194,0.246315136,pos,ns,0.6085089,-0.000576213,0.000298451,-1.930677415,0.054434728,neg,ns,0.452323005,Tnrc6b,Tnrc6b_Exon,15,80876321,80876370,80876321,80876322,50,-,CGAAGTGACGAAACCAAGTTTAAGCCAACCAACGGCCGCCAGCCCAATTG,"Exon (Tnrc6b-201/Tnrc6b, exon 7 of 25)",15,80711313,80941085,229773,1,Tnrc6b-201,165008,Tnrc6b-201;Tnrc6b-204;Tnrc6b-207;Tnrc6b-208,Tnrc6b;Tnrc6b;Tnrc6b;Tnrc6b,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,20,24,213988,ENSMUSG00000047888,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11336,cg13935507,-0.00000239,0.00000134,-1.786685862,0.074965341,loss,ns,0.00000342,0.00000227,1.504458925,0.133481369,pos,ns,-0.000118598,0.000666472,-0.177949293,0.858879023,neg,ns,0.066068004,-6.77E-08,0.0000229,-0.00295494,0.997644203,neg,ns,0.05113131,Zhx2,Zhx2_fiveUTR,15,57694648,57694697,57694696,57694697,50,-,TGCTGACGTTACAGATCATGTGGGTTTTGGCGTAGATTCCCCACTGATCG,Promoter (<=1kb),15,57694665,57839832,145168,1,Zhx2-201,0,Zhx2-201;Zhx2-202,Zhx2;Zhx2,0;-1032,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,6,387609,ENSMUSG00000071757,conserved gene and region,15,57694551,57694697,147,*,147,11,0.551020408,1.004347826,0.074829932,0.000000227,CpGisland,TRUE,U2,Pr-W
19887,cg27590908,-0.0000194,0.00000568,-3.421857948,0.000705414,loss,ns,0.0000145,0.00000965,1.504319168,0.133517321,pos,ns,0.001934669,0.002828189,0.684066535,0.494444189,pos,ns,0.305882722,-0.000161104,0.0000973,-1.656407532,0.09865109,neg,ns,0.569953257,Gm43103,Gm43103_Intergenic_downstream,5,101486671,101486720,101486719,101486720,50,+,TGTAATCATTGCAATAGTAAATGAAATGATGTACAGGTCTCTCCATCTCG,Distal Intergenic,5,101505528,101506329,802,2,Gm43103-201,19609,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,10,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25537,cg22374976,0.000121149,0.0000127,9.568967206,3.56E-19,gain,yes,0.0000324,0.0000215,1.50426594,0.133531016,pos,ns,-0.012687573,0.006301303,-2.013483956,0.044927662,neg,ns,1.34748618,0.00014705,0.000216701,0.678585215,0.497906965,pos,ns,0.740677737,Ebf3,Ebf3_Intron,7,137202716,137202765,137202716,137202717,50,-,CGTTAGCCTGAGCAGCTCTCTGTGAGCAAGATAAAGTGTTTTTCAGAGGT,"Intron (Ebf3-204/Ebf3, intron 11 of 15)",7,137193673,137314445,120773,2,Ebf3-204,111680,Ebf3-204;Ebf3-201;Ebf3-202;Ebf3-203;Ebf3-208;Ebf3-205,Ebf3;Ebf3;Ebf3;Ebf3;Ebf3;Ebf3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,62,84,13593,ENSMUSG00000010476,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18817,cg09034280,-0.00000511,0.00000133,-3.856014348,0.000140163,loss,ns,0.00000339,0.00000225,1.504232309,0.133539669,pos,ns,0.001735244,0.000659487,2.631201515,0.008933711,pos,ns,2.04896809,-0.0000442,0.0000227,-1.947262803,0.052405951,neg,ns,0.03927757,Rsf1,Rsf1_Exon,7,97581074,97581123,97581074,97581075,50,-,CGGGTGCAGGGCGCATGCTCTGCCCGGCCCCATTGAAACTTCCTGCTGCT,"Exon (Rsf1-207/Rsf1, exon 1 of 1)",7,97579889,97582973,3085,1,Rsf1-207,1185,Aamdc-206;Aamdc-202;Aamdc-204;Aamdc-213;Aamdc-208;Aamdc-203;Aamdc-209;Aamdc-207;Aamdc-212;Aamdc-210;Aamdc-205;Aamdc-211;Aamdc-215;Rsf1-207;Rsf1-206;Rsf1-201;Rsf1-203,Aamdc;Aamdc;Aamdc;Aamdc;Aamdc;Aamdc;Aamdc;Aamdc;Aamdc;Aamdc;Aamdc;Aamdc;Aamdc;Rsf1;Rsf1;Rsf1;Rsf1,-1577;-1595;-1676;-1578;-1588;-1577;-1633;-1592;-1632;-1600;-1655;-1692;-2847;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,6,233532,ENSMUSG00000035623,conserved gene but different region,7,97581018,97581232,215,*,215,13,0.572093023,0.747326203,0.060465116,0.000000155,CpGisland,TRUE,U1,Pr-A
4115,cg07263555,-0.00000306,0.00000825,-0.370592597,0.711194093,loss,ns,0.0000211,0.000014,1.504058639,0.133584362,pos,ns,0.004812281,0.004108342,1.171343816,0.242360131,pos,ns,0.615538821,-0.000239388,0.000141286,-1.694359117,0.091201376,neg,ns,0.739117469,Gm12072,Gm12072_Promoter,11,26824598,26824647,26824598,26824599,50,-,CGCCAATATGGATAATGCAAACAAGAGAGATTTGGGGCACATTTCGATTT,Promoter (8-9kb),11,26832804,26845457,12654,1,Gm12072-201,-8206,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,7,666270,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21085,cg15735715,-0.0000146,0.00000552,-2.640623034,0.008694479,loss,ns,-0.0000141,0.00000938,-1.503804918,0.133649675,neg,ns,0.004762381,0.002747717,1.733213614,0.084052083,pos,ns,1.075451519,-0.000415029,0.0000945,-4.392133732,0.0000154,neg,ns,0.857052827,Usp24,Usp24_Exon,4,106402033,106402082,106402081,106402082,50,-,ATTCCAGGTTCATCACTCATTAAACCATTGTTAGATGACTTCCTTTTCCG,"Exon (Usp24-204/Usp24, exon 41 of 68)",4,106316213,106441317,125105,1,Usp24-204,85820,Usp24-204;Usp24-201,Usp24;Usp24,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,5,329908,ENSMUSG00000028514,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25517,cg01475857,-0.00000853,0.00000392,-2.175434574,0.030352853,loss,ns,0.00001,0.00000666,1.503566248,0.133711137,pos,ns,-0.000603459,0.001951524,-0.309224264,0.757358668,neg,ns,0.1206984,0.000114356,0.0000671,1.70393647,0.089395033,pos,ns,0.940367631,Fam199x,Fam199x_Exon,X,137074090,137074139,137074138,137074139,50,-,ATGAGTCGAGCACACAGTGACAGCAACCTGTCTGCAAGTGCAGCAGAGCG,"Exon (Fam199x-201/Fam199x, exon 5 of 6)",20,137049594,137082503,32910,1,Fam199x-201,24496,Fam199x-201,Fam199x,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,245622,ENSMUSG00000042595,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13876,cg09760769,0.00000221,0.00000582,0.379457401,0.704608032,gain,ns,0.0000149,0.00000988,1.503554803,0.133714085,pos,ns,-0.000651273,0.002895749,-0.224906741,0.822200004,neg,ns,0.085022526,0.0000589,0.0000996,0.591888245,0.554356833,pos,ns,0.931270856,Ola1,Ola1_Intron,2,73180337,73180386,73180385,73180386,50,+,TCTATTTCAAGCAATTCATCTGGCAGCCTATTAGAATTCAAAATATTTCG,"Intron (Ola1-201/Ola1, intron 4 of 10)",2,73092801,73214447,121647,2,Ola1-201,34061,Gm13664-201;Ola1-201;Ola1-206;Ola1-203;Ola1-202,Gm13664;Ola1;Ola1;Ola1;Ola1,3726;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,19,67059,ENSMUSG00000027108,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10600,cg02860654,0.000000914,0.00000184,0.497332809,0.619306932,gain,ns,-0.00000469,0.00000312,-1.503348756,0.133767165,neg,ns,0.000985356,0.00091439,1.077611236,0.282045118,pos,ns,0.549681413,-0.0000368,0.0000314,-1.169942638,0.242922733,neg,ns,0.981962688,Acin1,Acin1_Exon,14,54650832,54650881,54650832,54650833,50,-,CGATTGGCCAGTTGGGCAGGGTTATATTTTACGGGCGGATTACCGTACAT,"Exon (Acin1-213/Acin1, exon 4 of 4)",14,54642161,54653616,11456,2,Acin1-208,2735,Acin1-208;Acin1-216;Acin1-202;Acin1-201;Acin1-219;Acin1-218;Acin1-221;Acin1-224;Acin1-203;Acin1-222;Acin1-205;Acin1-211;Acin1-225;Acin1-207;Acin1-204;Acin1-226;Acin1-213;Acin1-214;Acin1-209;Acin1-220;Gm17606-201,Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Gm17606,0;0;0;0;0;0;0;0;0;-4966;0;-4785;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,22,56215,ENSMUSG00000022185,conserved gene but different region,14,54650681,54650905,225,*,225,16,0.6,0.802854594,0.071111111,3.42E-10,CpGisland,TRUE,U10,Tr-S
21511,cg09469545,-0.00000857,0.00000129,-6.641702918,1.39E-10,loss,yes,0.0000033,0.00000219,1.503236639,0.133796054,pos,ns,0.000127106,0.00064248,0.197836886,0.84330235,pos,ns,0.07401669,-0.000021,0.0000221,-0.952434074,0.341618903,neg,ns,0.043577707,Gmppb,Gmppb_Exon,9,108049581,108049630,108049581,108049582,50,+,CGAAGCCACTGGTGGACTTCTGCAATAAGCCCATCTTGCTGCACCAAGTG,Promoter (<=1kb),9,108049242,108052801,3560,1,Gmppb-202,339,Amigo3-201;Gm20662-202;Gmppb-202;Gmppb-205;Gmppb-203;Gmppb-201;Gmppb-204;Ip6k1-201;Ip6k1-202;Ip6k1-210;Ip6k1-203;Ip6k1-206;Ip6k1-209;Ip6k1-207;Rnf123-207;Rnf123-214;Rnf123-201;Rnf123-218;Rnf123-210;Rnf123-205;Rnf123-203;Rnf123-208;Rnf123-206,Amigo3;Gm20662;Gmppb;Gmppb;Gmppb;Gmppb;Gmppb;Ip6k1;Ip6k1;Ip6k1;Ip6k1;Ip6k1;Ip6k1;Ip6k1;Rnf123;Rnf123;Rnf123;Rnf123;Rnf123;Rnf123;Rnf123;Rnf123;Rnf123,-3529;0;0;0;0;0;0;0;0;0;0;25329;0;4718;0;0;0;0;0;2600;0;0;3069,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,331026,ENSMUSG00000070284,conserved gene and region,9,108049376,108049582,207,*,207,15,0.594202899,0.869260918,0.072463768,1.06E-09,CpGisland,TRUE,U1,Pr-A
119,cg00274492,-0.00000259,0.0000029,-0.892722218,0.372698406,loss,ns,-0.0000074,0.00000492,-1.503206326,0.133803866,neg,ns,-0.003120225,0.001442297,-2.163372526,0.031276415,neg,ns,1.504783037,0.00000458,0.0000496,0.092240923,0.926566204,pos,ns,0.947304685,Elavl1,Elavl1_Exon,8,4295474,4295523,4295522,4295523,50,+,GGGGGTTTATGACCATTGAAACTGGTAATTGCCTCTTCTGCCTCCGACCG,"Exon (Elavl1-201/Elavl1, exon 5 of 6)",8,4285382,4325413,40032,2,Elavl1-201,29890,Elavl1-201;Elavl1-204,Elavl1;Elavl1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,5,15568,ENSMUSG00000040028,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
145,cg21082139,-0.00000304,0.00000139,-2.180550699,0.029968292,loss,ns,0.00000356,0.00000237,1.502868993,0.133890819,pos,ns,0.001318904,0.000694012,1.900404521,0.058307601,pos,ns,1.23427483,-0.0000189,0.0000239,-0.791705965,0.429137506,neg,ns,0.063284262,Kdm2a,Kdm2a_fiveUTR,19,4333912,4333961,4333960,4333961,50,+,ACAATGCTGCTGCGTCACCCACATGCAGCTCCCAGAAATGCTTTGCAACG,Promoter (<=1kb),19,4329191,4333919,4729,2,Kdm2a-210,0,Kdm2a-201;Kdm2a-202;Kdm2a-212;Kdm2a-210,Kdm2a;Kdm2a;Kdm2a;Kdm2a,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,30,225876,ENSMUSG00000054611,conserved gene and region,19,4333891,4334071,181,*,181,11,0.651933702,0.572620075,0.060773481,0.00000179,CpGisland,TRUE,NA,NRS
7501,cg23357093,0.0000813,0.0000069,11.77278014,1.07E-26,gain,yes,-0.0000176,0.0000117,-1.502848962,0.133895984,neg,ns,0.005540135,0.003436469,1.612159194,0.10794487,pos,ns,0.966797992,0.000139105,0.00011818,1.177065682,0.240072243,pos,ns,0.152513623,Ppp2r2b,Ppp2r2b_fiveUTR,18,42898768,42898817,42898768,42898769,50,+,CGCAGGAAACTGTTGTTGATTTTGCGGGTATCAATGTCCTCCTCCATTGA,Promoter (<=1kb),18,42758468,42898815,140348,2,Ppp2r2b-206,0,Ppp2r2b-204;Ppp2r2b-202;Ppp2r2b-201;Ppp2r2b-203;Ppp2r2b-208;Ppp2r2b-207;Ppp2r2b-205;Ppp2r2b-206,Ppp2r2b;Ppp2r2b;Ppp2r2b;Ppp2r2b;Ppp2r2b;Ppp2r2b;Ppp2r2b;Ppp2r2b,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,9,15,72930,ENSMUSG00000024500,conserved gene and region,18,42898666,42898793,128,*,128,11,0.6015625,0.951351351,0.0859375,5.43E-08,CpGisland,TRUE,U3,Pr-B
20923,cg16605861,0.000115181,0.000013,8.863647663,6.20E-17,gain,yes,-0.0000332,0.0000221,-1.502847051,0.133896477,neg,ns,0.014574606,0.006467633,2.253468151,0.02492818,pos,ns,1.603309421,-0.000226875,0.000222421,-1.020023201,0.308512826,neg,ns,0.247804599,Pax6,Pax6_Intron,2,105690322,105690371,105690370,105690371,50,+,GAAAAGATCCCACTAGATCCTGTCACAATTCCCTGAACTCTTTGAAGGCG,"Intron (Pax6-206/Pax6, intron 7 of 12)",2,105668900,105697364,28465,1,Pax6-206,21422,Pax6-206;Pax6-207;Pax6-210;Pax6-208;Pax6-202;Pax6-205;Pax6-225;Pax6-204;Pax6-201;Pax6-203;Pax6-224;Pax6-219;Pax6-213;Pax6-211;Pax6-222;Pax6-212;Pax6-215;Pax6-223;Pax6-216;Pax6-218,Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;-2112,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,78,18508,ENSMUSG00000027168,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
1586,cg20345626,-0.0000157,0.00000492,-3.194333739,0.001545724,loss,ns,0.0000126,0.00000836,1.502716505,0.13393014,pos,ns,0.001114291,0.002448915,0.45501417,0.649417536,pos,ns,0.187475989,-0.0000759,0.0000842,-0.901816166,0.367854654,neg,ns,0.893514902,Zfp521,Zfp521_Intron,18,13798360,13798409,13798360,13798361,50,+,CGAAAGTCTATTTATCACCAGAGTTTGCAAGCCCGTCTGCTAAAGAGCGC,"Intron (Zfp521-201/Zfp521, intron 5 of 7)",18,13687013,13972787,285775,2,Zfp521-201,174378,Zfp521-201;Zfp521-205;Zfp521-204,Zfp521;Zfp521;Zfp521,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,81,225207,ENSMUSG00000024420,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24561,cg21902327,0.00000137,0.000007,0.195150183,0.845403218,gain,ns,0.0000179,0.0000119,1.502700729,0.133934209,pos,ns,0.004710131,0.003482107,1.352666836,0.177147868,pos,ns,0.751664069,-0.00024543,0.000119749,-2.049534766,0.041251072,neg,ns,0.767981202,Fgf6,Fgf6_Promoter,6,127015535,127015584,127015535,127015536,50,-,CGGTATTTTTAGGGCCATTAATTCTGACCACGTGCCTGAGAGGCAAGGTG,Promoter (<=1kb),6,127015586,127028187,12602,1,Fgf6-201,-51,Fgf6-201,Fgf6,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,5,14177,ENSMUSG00000000183,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14358,cg17028783,-0.00000207,0.00000173,-1.194191085,0.233316187,loss,ns,0.00000443,0.00000295,1.502663685,0.133943763,pos,ns,0.000802408,0.000863485,0.929267715,0.353473382,pos,ns,0.451643285,-0.00000692,0.0000297,-0.233044988,0.81588027,neg,ns,0.046041821,Smad7,Smad7_Exon,18,75369452,75369501,75369452,75369453,50,-,CGGATCTCAGGCATTCCTCGGAAGTCAAGAGGCTGTGTTGCTGTGAATCT,"Exon (Smad7-201/Smad7, exon 1 of 4)",18,75367529,75395935,28407,1,Smad7-201,1923,Smad7-201;Smad7-202;Smad7-205;Smad7-204,Smad7;Smad7;Smad7;Smad7,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,19,17131,ENSMUSG00000025880,conserved gene and region,18,75368486,75369554,1069,*,1069,115,0.705332086,0.865343329,0.107577175,4.83E-91,CpGisland,TRUE,U1,Pr-A
9734,cg02546486,-0.0000043,0.00000594,-0.724439396,0.469342411,loss,ns,0.0000152,0.0000101,1.502622453,0.133954397,pos,ns,0.009445637,0.002957561,3.193724695,0.001548884,pos,ns,2.80998122,-0.000287256,0.00010171,-2.82426017,0.005045972,neg,ns,0.909790132,Hnrnph1,Hnrnph1_Exon,11,50382048,50382097,50382096,50382097,50,-,CAAAAGGTTTTATTCTCTTTGCTTGTGACTATTTTTCATTGAAGCATGCG,"Exon (Hnrnph1-205/Hnrnph1, exon 4 of 11)",11,50376990,50386528,9539,1,Hnrnph1-203,5058,Hnrnph1-203;Hnrnph1-201;Hnrnph1-205;Hnrnph1-206;Hnrnph1-215;Hnrnph1-204;Hnrnph1-202;Hnrnph1-207;Hnrnph1-208;Hnrnph1-210;Hnrnph1-211;Hnrnph1-213;Hnrnph1-209;Hnrnph1-218;Hnrnph1-216;Hnrnph1-214;Hnrnph1-212;Hnrnph1-217,Hnrnph1;Hnrnph1;Hnrnph1;Hnrnph1;Hnrnph1;Hnrnph1;Hnrnph1;Hnrnph1;Hnrnph1;Hnrnph1;Hnrnph1;Hnrnph1;Hnrnph1;Hnrnph1;Hnrnph1;Hnrnph1;Hnrnph1;Hnrnph1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;-1715;-1734;-2866,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,59013,ENSMUSG00000007850,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26061,cg08495448,-0.0000304,0.0000118,-2.581197818,0.010305038,loss,ns,0.0000301,0.00002,1.502557677,0.133971106,pos,ns,-0.00474309,0.005866795,-0.808463676,0.419443699,neg,ns,0.377326325,-0.000286773,0.000201759,-1.421365446,0.156215729,neg,ns,0.491895487,Gm2505,Gm2505_Intergenic_upstream,3,143536923,143536972,143536923,143536924,50,-,CGTGAGAAAGCCACAAATCAAGGGCAGGGATAAAGTTAATACAATTTTAT,Distal Intergenic,3,143872995,143873819,825,1,Gm2505-201,-336072,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,37,100039938,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3705,cg17849895,0.00000294,0.00000165,1.781647844,0.075785547,gain,ns,0.00000421,0.0000028,1.502542199,0.133975098,pos,ns,0.001447316,0.000820103,1.764797663,0.078582423,pos,ns,1.104674584,0.0000241,0.0000282,0.853385566,0.394104427,pos,ns,0.984910199,Pou2f2,Pou2f2_Exon,7,25097155,25097204,25097203,25097204,50,-,TTCTCTAAGGCGAAGCGGACGTTTGTCTCGATGCTGGTCCTCTTCTTGCG,"Exon (Pou2f2-203/Pou2f2, exon 10 of 14)",7,25087344,25132488,45145,2,Pou2f2-203,35284,Pou2f2-203;Pou2f2-209;Pou2f2-201;Pou2f2-206;Pou2f2-204;Pou2f2-205;Pou2f2-202;Pou2f2-210;Pou2f2-207,Pou2f2;Pou2f2;Pou2f2;Pou2f2;Pou2f2;Pou2f2;Pou2f2;Pou2f2;Pou2f2,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,29,18987,ENSMUSG00000008496,conserved gene but different region,7,25097142,25097226,85,*,85,10,0.611764706,1.287878788,0.117647059,1.22E-08,CpGisland,TRUE,NA,NRS
21498,cg16949290,0.0000802,0.00000672,11.9290054,2.98E-27,gain,yes,-0.0000171,0.0000114,-1.502339942,0.13402728,neg,ns,0.007540127,0.003344178,2.254702339,0.024849642,pos,ns,1.604679862,-0.0000463,0.000115006,-0.402730174,0.687424315,neg,ns,0.113236855,Bcl11b,Bcl11b_Promoter,12,108004053,108004102,108004053,108004054,50,-,CGGTCTCTCTATGGCTGGGGCTGCCTCTGTACAATGGGATAAAATTCAAG,Promoter (<=1kb),12,107910403,108003602,93200,2,Bcl11b-201,-500,Bcl11b-201;Bcl11b-202;Bcl11b-203,Bcl11b;Bcl11b;Bcl11b,0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,8,39,58208,ENSMUSG00000048251,conserved gene but different region,12,108003757,108004054,298,*,298,35,0.72818792,0.89604811,0.117449664,1.44E-29,CpGisland,TRUE,U3,Pr-B
7108,cg18010408,0.00000305,0.00000449,0.678502443,0.497959355,gain,ns,0.0000115,0.00000762,1.502280048,0.134042736,pos,ns,0.001952231,0.002233739,0.873974557,0.38280865,pos,ns,0.417018258,-0.0000509,0.0000768,-0.662180049,0.508347797,neg,ns,0.913628055,Gm5973,Gm5973_Intergenic_upstream,1,41001470,41001519,41001470,41001471,50,-,CGTTTGCATTATTCAGTGGAAAAATACAAAGTGGCATAATGATGGGAATA,Distal Intergenic,1,40863737,40864232,496,2,Gm5973-201,-137287,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,18,18,546733,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11554,cg19425332,0.0000808,0.00000927,8.71976853,1.73E-16,gain,yes,-0.0000236,0.0000157,-1.502277285,0.134043449,neg,ns,0.022603274,0.004611972,4.900999682,0.00000154,pos,ns,5.812532027,-0.000471971,0.000158605,-2.975755855,0.003152615,neg,ns,0.239885568,Vax1,Vax1_Promoter,19,59171246,59171295,59171294,59171295,50,+,TCAATTCAAGCGCATGGCCTTGTGCAAGGAGCATGCTCCAGCCCTTCTCG,Promoter (1-2kb),19,59166187,59170056,3870,2,Vax1-201,-1190,Vax1-201;Vax1-202,Vax1;Vax1,0;-4266,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,12,18,22326,ENSMUSG00000006270,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
1837,cg24531498,-0.0000099,0.00000366,-2.70867573,0.007130558,loss,ns,-0.00000933,0.00000621,-1.50217215,0.134070582,neg,ns,-0.003916482,0.001819534,-2.152464187,0.032132403,neg,ns,1.493056801,0.000116406,0.0000626,1.860298343,0.063790177,pos,ns,0.921336958,Foxp2,Foxp2_Intergenic_downstream,6,15500920,15500969,15500968,15500969,50,-,ATTGCAGAGCCTGTTGAAAACTCATTATCTTCAAATAGGATTACATTCCG,Distal Intergenic,6,15376689,15378088,1400,1,Foxp2-215,124280,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,65,114142,ENSMUSG00000029563,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3848,cg27507121,-0.00000402,0.00000612,-0.656005119,0.512307422,loss,ns,-0.0000156,0.0000104,-1.501874479,0.134147429,neg,ns,-0.001583388,0.003048357,-0.519423434,0.603836147,neg,ns,0.219080893,-0.0000606,0.000104833,-0.578153995,0.5635799,neg,ns,0.930126562,Gm9321,Gm9321_Intergenic_downstream,12,25573144,25573193,25573192,25573193,50,+,ATAATCACACACAAAATACACAGCAACAGTTGCAAATAGAGTGTTTAACG,Distal Intergenic,12,25819764,25820541,778,2,Gm9321-201,247348,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,4,668726,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9404,cg04817303,-0.00000472,0.00000261,-1.809552533,0.071333648,loss,ns,0.00000665,0.00000443,1.501657022,0.13420359,pos,ns,0.000909955,0.001298029,0.701028231,0.483811267,pos,ns,0.315324022,-0.0000233,0.0000446,-0.522524926,0.601678108,neg,ns,0.974382539,Zbtb16,Zbtb16_Intron,9,48661086,48661135,48661134,48661135,50,+,TAAAGATAGATTGATCACCCCAGACTTTGTTCATGAATATTTAAATATCG,"Intron (Zbtb16-201/Zbtb16, intron 5 of 6)",9,48654297,48835945,181649,2,Zbtb16-201,174810,Zbtb16-201;Zbtb16-202,Zbtb16;Zbtb16,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,37,235320,ENSMUSG00000066687,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17537,cg25877801,-0.0000236,0.0000102,-2.316040115,0.021208178,loss,ns,0.000026,0.0000173,1.501527027,0.134237171,pos,ns,0.008933349,0.00506329,1.76433684,0.078660083,pos,ns,1.104245602,-0.000288945,0.000174126,-1.659400253,0.098046432,neg,ns,0.449662616,Fnbp4,Fnbp4_Exon,2,90767824,90767873,90767824,90767825,50,+,CGCATGCGAGAGCTCTGTGCGCTTTACAGGACCTCTGGAAGCAACTACTC,"Exon (Fnbp4-202/Fnbp4, exon 11 of 14)",2,90745370,90781021,35652,1,Fnbp4-201,22454,Fnbp4-201;Fnbp4-210;Fnbp4-202;Fnbp4-209;Fnbp4-208;Fnbp4-207;Fnbp4-206;Fnbp4-205,Fnbp4;Fnbp4;Fnbp4;Fnbp4;Fnbp4;Fnbp4;Fnbp4;Fnbp4,0;0;0;0;0;0;-232;-789,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,6,55935,ENSMUSG00000008200,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24681,cg02613810,-5.44E-08,0.00000462,-0.011781259,0.990607711,loss,ns,-0.0000118,0.00000785,-1.501455536,0.134255642,neg,ns,-0.000883401,0.002299278,-0.384207936,0.701087745,neg,ns,0.154227624,-0.0000302,0.0000791,-0.381981728,0.702736633,neg,ns,0.876902479,Zfp629,Zfp629_Exon,7,127611705,127611754,127611753,127611754,50,-,GGATCTTCTGGTGCTTGAGGAGGTTGTGGTTCTGGCCGAAGCGCTTCCCG,"Exon (Zfp629-201/Zfp629, exon 3 of 3)",7,127607031,127614433,7403,2,Zfp629-201,2679,Zfp629-201;Zfp629-203;Zfp629-202;Zfp629-208;Zfp629-207;Zfp629-206;Zfp629-205;Zfp629-204;Zfp629-209,Zfp629;Zfp629;Zfp629;Zfp629;Zfp629;Zfp629;Zfp629;Zfp629;Zfp629,0;0;0;0;0;0;2606;3446;2611,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,4,320683,ENSMUSG00000045639,conserved gene and region,7,127611746,127611879,134,*,134,11,0.649253731,0.784042553,0.082089552,8.77E-08,CpGisland,TRUE,U10,Tr-S
23188,cg17702804,0.0000704,0.00000758,9.299018427,2.63E-18,gain,yes,-0.0000193,0.0000129,-1.501404757,0.134268762,neg,ns,0.005933444,0.003770399,1.573691449,0.116578798,pos,ns,0.933380428,0.000083,0.000129664,0.639915334,0.522700288,pos,ns,0.584202719,Rnf220,Rnf220_Intron,4,117411804,117411853,117411852,117411853,50,+,ACTGTTCCTTTTGAAGGCAGCCTGGTGCTACCCGCATGTACCTTAACCCG,"Intron (Rnf220-201/Rnf220, intron 2 of 14)",4,117271463,117497052,225590,2,Rnf220-201,85199,Rnf220-201;Rnf220-207,Rnf220;Rnf220,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15691,cg05212802,0.0000227,0.00000238,9.532544407,4.67E-19,gain,yes,0.00000608,0.00000405,1.501395477,0.13427116,pos,ns,0.000491083,0.001186167,0.414008287,0.679154332,pos,ns,0.168031525,0.0000604,0.0000408,1.480770145,0.139683461,pos,ns,0.046679705,Rnf150,Rnf150_Exon,8,82864345,82864394,82864345,82864346,50,+,CGGCAAGAACTGGATAGCCCTCATCCCCAAGGGCAACTGCACGTACAGGG,Promoter (<=1kb),8,82863356,83091268,227913,1,Rnf150-201,989,Rnf150-201;Rnf150-202;Rnf150-203,Rnf150;Rnf150;Rnf150,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,330812,ENSMUSG00000047747,conserved gene but different region,8,82864078,82864346,269,*,269,33,0.695167286,1.018939394,0.12267658,1.34E-28,CpGisland,TRUE,U3,Pr-B
7593,cg04564000,0.000017,0.00000391,4.355535435,0.0000181,gain,ns,-0.00000998,0.00000665,-1.501358768,0.134280646,neg,ns,0.004671976,0.001947198,2.399332327,0.017015086,pos,ns,1.769165859,-0.000307333,0.000067,-4.589521852,0.00000646,neg,ns,0.035391969,Zbtb20,Zbtb20_fiveUTR,16,43363869,43363918,43363869,43363870,50,-,CGACAAACTAATCAGAGCAGGGAGCTTAACAGCCAGGCCTGGACACCCTC,Promoter (<=1kb),16,43363873,43609520,245648,1,Zbtb20-219,0,Zbtb20-209;Zbtb20-211;Zbtb20-217;Zbtb20-218;Zbtb20-204;Zbtb20-215;Zbtb20-201;Zbtb20-203;Zbtb20-214;Zbtb20-213;Zbtb20-219;Zbtb20-216,Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,8,98,56490,ENSMUSG00000022708,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13773,cg18627178,-0.0000227,0.00000696,-3.262556683,0.001227297,loss,ns,0.0000177,0.0000118,1.501268055,0.13430409,pos,ns,0.009394566,0.003461852,2.713739704,0.00702501,pos,ns,2.153353063,-0.000467491,0.000119053,-3.926750028,0.000106153,neg,ns,0.832350202,Marchf4,Marchf4_Promoter,1,72540308,72540357,72540356,72540357,50,-,GGGATTTCATTGCTAACAGGTGGGAAGCAATCAATATTTTTCATTTCACG,Promoter (3-4kb),1,72427112,72536930,109819,2,Marchf4-201,-3427,Marchf4-201,Marchf4,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7736,cg21163085,-0.00000254,0.00000238,-1.065578081,0.28744363,loss,ns,0.00000607,0.00000404,1.500792424,0.134427061,pos,ns,0.002698583,0.00118467,2.277919615,0.023411815,pos,ns,1.630564917,-0.0000947,0.0000407,-2.324579512,0.020740191,neg,ns,0.939678594,Arhgap15,Arhgap15_Intron,2,44017470,44017519,44017470,44017471,50,+,CGATTCCTTTTAGACGTTATTTTATGAAATAATACCTGTCAGCTGCTGCC,"Intron (Arhgap15-203/Arhgap15, intron 6 of 14)",2,43748824,44395953,647130,1,Arhgap15-203,268646,Arhgap15-203;Arhgap15-202;Arhgap15-201,Arhgap15;Arhgap15;Arhgap15,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,72,78,76117,ENSMUSG00000049744,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
455,cg16198036,-0.00000604,0.00000126,-4.800189688,0.00000247,loss,ns,0.00000321,0.00000214,1.5007835,0.134429369,pos,ns,0.000746117,0.000626387,1.191143253,0.234508557,pos,ns,0.629841306,-0.0000123,0.0000215,-0.572011629,0.567728646,neg,ns,0.976460321,Synj2,Synj2_threeUTR,17,6010696,6010745,6010696,6010697,50,-,CGAACCATCCAGTCCAACTTCTTCGACGGGGTGAAGCAGGAGGCCATCAA,3' UTR,17,5941280,6039168,97889,1,Synj2-210,69416,Synj2-210;Synj2-213;Synj2-202;Synj2-214;Synj2-201;Synj2-209;Synj2-208;Synj2-207;Synj2-206;Synj2-205;Synj2-203;Synj2-204;Synj2-212;Synj2-216;Synj2-215,Synj2;Synj2;Synj2;Synj2;Synj2;Synj2;Synj2;Synj2;Synj2;Synj2;Synj2;Synj2;Synj2;Synj2;Synj2,0;0;0;0;0;0;0;0;0;0;0;0;3084;0;-2804,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,threeUTR,1,1,20975,ENSMUSG00000023805,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16231,cg01038105,0.00000376,0.0000171,0.220237808,0.825830918,gain,ns,-0.0000435,0.000029,-1.500720202,0.134445741,neg,ns,0.06690627,0.008490196,7.880415101,5.58E-14,pos,yes,13.25335856,-0.001431695,0.000291977,-4.903448814,0.00000152,neg,yes,0.396345699,Ctnnd1,Ctnnd1_fiveUTR,2,84622016,84622065,84622064,84622065,50,-,GTCCGTTGAGTTTCAAATCTGAAAATTTCTGTCTTTCAAGGTCAGCATCG,5' UTR,2,84600071,84650745,50675,2,Ctnnd1-204,28680,Ctnnd1-204;Ctnnd1-206;Ctnnd1-207;Ctnnd1-208;Ctnnd1-209;Ctnnd1-216;Ctnnd1-220;Ctnnd1-221;Ctnnd1-222;Ctnnd1-224;Ctnnd1-203;Ctnnd1-211;Ctnnd1-212;Ctnnd1-213;Ctnnd1-214;Ctnnd1-215;Ctnnd1-218;Ctnnd1-219;Ctnnd1-210;Ctnnd1-205;Ctnnd1-223;Ctnnd1-201;Ctnnd1-202;Ctnnd1-228;Ctnnd1-217;Ctnnd1-225;Ctnnd1-229;Gm28635-201,Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Ctnnd1;Gm28635,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,4,12388,ENSMUSG00000034101,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10185,cg23432345,0.0000271,0.0000039,6.962994264,2.00E-11,gain,yes,0.00000994,0.00000662,1.500647823,0.134464464,pos,ns,0.002064758,0.001939934,1.064343976,0.28800123,pos,ns,0.540605657,0.0000568,0.0000667,0.852112576,0.394809422,pos,ns,0.078039082,Hoxa7,Hoxa7_fiveUTR,6,52217394,52217443,52217394,52217395,50,+,CGAAGAACTCATAATTTTGACCTGTGATTTGTTGTCCGGCAGCTTTCAGT,5' UTR,6,52214491,52220393,5903,2,Hoxa7-205,2950,Gm28308-201;Hoxa3-201;Hoxa3-203;Hoxa7-205;Hoxa7-201;Hoxa7-202;Hoxa7-204;Hoxa7-203,Gm28308;Hoxa3;Hoxa3;Hoxa7;Hoxa7;Hoxa7;Hoxa7;Hoxa7,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,9,10,15404,ENSMUSG00000038236,conserved gene but different region,6,52217250,52217463,214,*,214,20,0.546728972,1.271538919,0.093457944,5.89E-15,CpGisland,TRUE,U3,Pr-B
972,cg11068685,0.000101829,0.0000177,5.739892201,2.26E-08,gain,yes,-0.0000452,0.0000301,-1.500494472,0.134504139,neg,ns,0.029306032,0.008829683,3.319035737,0.001010957,pos,ns,2.995267466,-0.001050704,0.000303652,-3.460223306,0.00061539,neg,ns,0.301226716,Qk,Qk_threeUTR,17,10209534,10209583,10209534,10209535,50,-,CGATTACCAGTTAACTGATCAGCAGGCAGGCATGGTCAGGTCATCATTGG,3' UTR,17,10202601,10319380,116780,2,Qk-204,109797,Qk-204;Qk-202;Qk-203;Qk-201;Qk-206;Qk-205,Qk;Qk;Qk;Qk;Qk;Qk,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,12,17,19317,ENSMUSG00000062078,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25915,cg14255842,-0.00000869,0.00000303,-2.865715345,0.004445136,loss,ns,0.00000773,0.00000515,1.500216129,0.134576176,pos,ns,0.000399033,0.001508822,0.264466703,0.791596061,pos,ns,0.101496375,-0.0000227,0.0000519,-0.437830614,0.661813977,neg,ns,0.045662051,Rcc2,Rcc2_fiveUTR,4,140701524,140701573,140701572,140701573,50,+,AGCTCGTATTTACATTTTAAGTGTATCTGGTGAGTGGGCTGGAGCCCTCG,Promoter (<=1kb),4,140700541,140723220,22680,1,Rcc2-202,983,Rcc2-202;Rcc2-205;Rcc2-201,Rcc2;Rcc2;Rcc2,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,3,108911,ENSMUSG00000040945,conserved gene and region,4,140701572,140701667,96,*,96,8,0.614583333,0.903529412,0.083333333,0.00000859,CpGisland,TRUE,U1,Pr-A
27379,cg06004718,0.00000317,0.00000238,1.332331558,0.183729826,gain,ns,-0.00000606,0.00000404,-1.500080554,0.134611274,neg,ns,0.000339612,0.001183622,0.286925712,0.774360885,pos,ns,0.111056593,0.00000128,0.0000407,0.03156296,0.974840894,pos,ns,0.947336259,Pou2f1,Pou2f1_Exon,1,165896441,165896490,165896489,165896490,50,+,AAGAAACTCTTCTCTAAGGCCACACGGATGTTGGTCTCTATGCTGGTGCG,"Exon (Pou2f1-205/Pou2f1, exon 11 of 17)",1,165865154,165934948,69795,2,Pou2f1-205,38458,Pou2f1-205;Pou2f1-208;Pou2f1-207;Pou2f1-206;Pou2f1-216;Pou2f1-209;Pou2f1-204;Pou2f1-210;Pou2f1-201;Pou2f1-202;Pou2f1-213;Pou2f1-203;Pou2f1-215,Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1,0;0;0;0;0;0;0;-4322;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,18,18986,ENSMUSG00000026565,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
671,cg11244870,0.0000249,0.00000534,4.6650323,0.0000046,gain,ns,-0.0000136,0.00000908,-1.49962804,0.134728474,neg,ns,-0.001175688,0.002659621,-0.442051043,0.658760495,neg,ns,0.181272453,-0.0000448,0.0000915,-0.490045081,0.624448627,neg,ns,0.718976654,Fndc1,Fndc1_Exon,17,7775544,7775593,7775544,7775545,50,-,CGGGGCGTATGAAAGAATGTATTCTGAAATGATTTGGCAGATGGTTGGAA,"Exon (Fndc1-202/Fndc1, exon 7 of 20)",17,7738569,7804974,66406,2,Fndc1-202,29381,Fndc1-202;Fndc1-205,Fndc1;Fndc1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,68655,ENSMUSG00000071984,conserved gene and region,17,7775368,7775550,183,*,183,11,0.573770492,0.755063766,0.06010929,0.00000199,CpGisland,TRUE,U15,NS
22801,cg24620051,7.17E-08,0.000000723,0.099101728,0.921121552,gain,ns,0.00000184,0.00000123,1.499404042,0.134786519,pos,ns,0.000538757,0.000359904,1.496946193,0.135424696,pos,ns,0.86830213,-0.00000395,0.0000124,-0.31880236,0.750091082,neg,ns,0.015789408,Dmbx1,Dmbx1_Intergenic_upstream,4,115963196,115963245,115963196,115963197,50,+,CGCTCCCCGAGGGGCCGCCAGATTGTTCCCTTCATAATTGATTGACTCTA,Distal Intergenic,4,115915120,115939926,24807,2,Dmbx1-202,-23270,Faah-202,Faah,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,15,42,140477,ENSMUSG00000028707,mapped to different genes,4,115962737,115963443,707,*,707,80,0.684582744,0.96711865,0.113154173,1.72E-65,CpGisland,TRUE,U3,Pr-B
9224,cg20107890,0.00000102,0.00000576,0.177995724,0.858842589,gain,ns,-0.0000147,0.00000978,-1.499268876,0.134821554,neg,ns,-0.003185642,0.002864856,-1.111972941,0.26701139,neg,ns,0.573470213,0.0000445,0.0000985,0.451840042,0.651700191,pos,ns,0.882262473,Gm20517,Gm20517_threeUTR,17,47680680,47680729,47680728,47680729,50,-,AGGTTTTTGGGTCCACTGCAATGACTCAAAGCTGAATGTATGCAGTGTCG,3' UTR,17,47611613,47683861,72249,1,Gm20517-202,69067,Gm20517-202;Usp49-201;Usp49-204;Usp49-202,Gm20517;Usp49;Usp49;Usp49,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,6,112694759,ENSMUSG00000023984,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19714,cg05422546,-0.000000915,0.00000165,-0.555300483,0.579089632,loss,ns,0.00000419,0.0000028,1.498996652,0.134892135,pos,ns,0.001408935,0.000819734,1.718771518,0.086654319,pos,ns,1.062209787,-0.0000418,0.0000282,-1.484402186,0.138718326,neg,ns,0.968870851,Fam168a,Fam168a_Exon,7,100824220,100824269,100824220,100824221,50,-,CGAGAACCGAACTTACCAAGCATCCTCTGCGGCTTTCAGTAAATACAGCC,"Exon (Fam168a-202/Fam168a, exon 5 of 9)",7,100706635,100841381,134747,1,Fam168a-202,117585,Fam168a-202;Fam168a-208;Fam168a-204;Fam168a-201;Fam168a-205;Fam168a-206;Fam168a-210,Fam168a;Fam168a;Fam168a;Fam168a;Fam168a;Fam168a;Fam168a,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,5,319604,ENSMUSG00000029461,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26387,cg16790748,0.0000625,0.000011,5.667104334,3.32E-08,gain,yes,0.0000281,0.0000187,1.498837171,0.134933498,pos,ns,0.014786198,0.00548923,2.693674471,0.007451678,pos,ns,2.127745909,-0.00020066,0.000188774,-1.062965718,0.288624828,neg,ns,0.184932844,Nkx2-2,Nkx2-2_Exon,2,147188283,147188332,147188331,147188332,50,-,AACCGATTGCTAAGCTGCGGACAATGAGCGAAATGTAGACAAATGTCCCG,"Exon (6430503K07Rik-201/6430503K07Rik-201, exon 3 of 3)",2,147186305,147194243,7939,2,Nkx2-2-202,5911,Nkx2-2-203;Nkx2-2-201;Nkx2-2-202;Nkx2-2-204,Nkx2-2;Nkx2-2;Nkx2-2;Nkx2-2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,15,30,18088,ENSMUSG00000027434,conserved gene but different region,2,147188041,147188404,364,*,364,26,0.585164835,0.836633663,0.071428571,2.81E-16,CpGisland,TRUE,U13,Hc-P
5219,cg15698781,-0.00000186,0.000000968,-1.919843293,0.055795227,loss,ns,0.00000246,0.00000164,1.498801457,0.134942763,pos,ns,0.000486169,0.000481597,1.009493096,0.313525496,pos,ns,0.503727136,-0.0000179,0.0000166,-1.083194294,0.279563971,neg,ns,0.970891741,Depdc5,Depdc5_threeUTR,5,32903848,32903897,32903896,32903897,50,+,GTGGGTGTCTTTGAAGTGGACCGCCTACTCATGATCCTGACCAAGCAGCG,3' UTR,5,32863721,32956300,92580,1,Depdc5-201,40127,Depdc5-201;Depdc5-202;Depdc5-204;Depdc5-211;Depdc5-216;Depdc5-217;Depdc5-205;Depdc5-218,Depdc5;Depdc5;Depdc5;Depdc5;Depdc5;Depdc5;Depdc5;Depdc5,0;0;0;0;0;0;0;-390,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,7,277854,ENSMUSG00000037426,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18967,cg24862511,0.0000237,0.00000399,5.950649589,7.21E-09,gain,yes,-0.0000102,0.00000678,-1.49866894,0.134977142,neg,ns,-0.001177103,0.001985424,-0.592872128,0.553698978,neg,ns,0.256726278,-0.0000478,0.0000683,-0.699974603,0.484468113,neg,ns,0.858828196,Nfia,Nfia_Exon,4,98081757,98081806,98081757,98081758,50,+,CGATTCGTCAGTGTTGGACCACGGGATCCAAGCTTTGTAAATATCCCTCA,"Exon (Nfia-202/Nfia, exon 10 of 11)",4,97777608,98118871,341264,1,Nfia-202,304149,Nfia-202;Nfia-203;Nfia-205;Nfia-201;Nfia-204,Nfia;Nfia;Nfia;Nfia;Nfia,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,44,18027,ENSMUSG00000028565,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1398,cg20784465,0.00000398,0.000000989,4.019191592,0.0000734,gain,ns,-0.00000252,0.00000168,-1.498476774,0.135027008,neg,ns,-0.001052074,0.000492337,-2.136899255,0.033388688,neg,ns,1.476400647,-0.0000203,0.0000169,-1.199002215,0.231442783,neg,ns,0.027149282,Med14,Med14_Exon,X,12677585,12677634,12677585,12677586,50,-,CGCCCACCAGGGGGCAGTGTAAGATTAGCCATTAAATCACGAACAGCTGC,"Exon (Med14-202/Med14, exon 31 of 31)",20,12675369,12762073,86705,2,Med14-202,84439,1810030O07Rik-201;Med14-202;Med14-203;Med14-204,1810030O07Rik;Med14;Med14;Med14,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,7,26896,ENSMUSG00000064127,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23702,cg01466662,0.000065,0.00000997,6.516438828,2.91E-10,gain,yes,0.0000254,0.0000169,1.498440171,0.135036508,pos,ns,0.013671888,0.004962687,2.754936434,0.006217377,pos,ns,2.206392809,-0.00018337,0.000170666,-1.074432707,0.283464361,neg,ns,0.170267125,Tmem196,Tmem196_Exon,12,119946628,119946677,119946676,119946677,50,-,GCGGGGTGTGTGTACGTTGAGCCATTTCACTCTCTCTTTACCTCTTTACG,Promoter (<=1kb),12,119945822,119947428,1607,1,Tmem196-206,806,Tmem196-206;Tmem196-201;Tmem196-202;Tmem196-204;Tmem196-205;Tmem196-203,Tmem196;Tmem196;Tmem196;Tmem196;Tmem196;Tmem196,0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,217951,ENSMUSG00000048004,mapped to different genes,12,119946548,119946696,149,*,149,13,0.624161074,0.904295051,0.087248322,1.82E-09,CpGisland,TRUE,U13,Hc-P
19619,cg13296177,-0.00000302,0.00000207,-1.453806783,0.147011505,loss,ns,-0.00000528,0.00000352,-1.498288265,0.135075939,neg,ns,-0.004185584,0.001032461,-4.053986626,0.0000637,neg,ns,4.19561427,0.0000445,0.0000355,1.254000777,0.210786506,pos,ns,0.937101888,Dip2b,Dip2b_Exon,15,100151151,100151200,100151199,100151200,50,-,ACACATCTTCGGCCTCTGAGGATGAGGGCTCTCTGAGACGCCAAGCTGCG,"Exon (Dip2b-202/Dip2b, exon 5 of 38)",15,100038664,100219473,180810,1,Dip2b-202,112487,Dip2b-202;Dip2b-201,Dip2b;Dip2b,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,8,239667,ENSMUSG00000023026,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23474,cg11201335,2.89E-08,0.00000542,0.005326227,0.995753732,gain,ns,-0.0000138,0.0000092,-1.497739125,0.135218556,neg,ns,-0.004449585,0.00269642,-1.650182184,0.099918459,neg,ns,1.000354274,0.0000447,0.0000927,0.482040125,0.630117592,pos,ns,0.706863254,Rbfox3,Rbfox3_Intron,11,118544800,118544849,118544800,118544801,50,-,CGGAGCGGAGCCAGCATGAAATATTCATGCAGTAAATGGTGCAATTTTGT,"Intron (Rbfox3-205/Rbfox3, intron 3 of 13)",11,118489762,118909550,419789,2,Rbfox3-205,364701,Rbfox3-205;Rbfox3-203;Rbfox3-201;Rbfox3-202;Rbfox3-204;Rbfox3-206;Rbfox3-209,Rbfox3;Rbfox3;Rbfox3;Rbfox3;Rbfox3;Rbfox3;Rbfox3,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,13,52897,ENSMUSG00000025576,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7591,cg20324735,0.0000582,0.0000124,4.707504425,0.00000379,gain,ns,-0.0000314,0.000021,-1.49771628,0.135224492,neg,ns,0.005480744,0.006151697,0.89093192,0.373656638,pos,ns,0.427527298,-0.000767806,0.000211556,-3.629320572,0.000332273,neg,ns,0.133538678,Zbtb20,Zbtb20_Exon,16,43363117,43363166,43363165,43363166,50,+,TTACGGTACAGTCCAGCATGAGCTGGAAATGTAGGAACCTCAGCCTCCCG,"Exon (Zbtb20-214/Zbtb20, exon 1 of 4)",16,42875881,43463175,587295,1,Zbtb20-209,487236,Zbtb20-209;Zbtb20-211;Zbtb20-217;Zbtb20-218;Zbtb20-204;Zbtb20-215;Zbtb20-201;Zbtb20-203;Zbtb20-214;Zbtb20-213;Zbtb20-219;Zbtb20-216,Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,17,98,56490,ENSMUSG00000022708,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3524,cg18470534,-0.00000697,0.00000365,-1.910034011,0.057051471,loss,ns,0.00000929,0.0000062,1.497569573,0.135262615,pos,ns,0.000951504,0.001816795,0.523726547,0.600842952,pos,ns,0.221239029,-0.000068,0.0000625,-1.08790543,0.277481944,neg,ns,0.934964453,Gm12067,Gm12067_Intergenic_downstream,11,24371037,24371086,24371085,24371086,50,-,ATAGACATGTAATGAAGCATATGAAACATGGGTTTCATTTCCAGGCCCCG,Distal Intergenic,11,24552438,24553962,1525,2,Gm12067-201,182925,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,58,100417843,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4571,cg03710447,0.00000643,0.0000157,0.409605928,0.682377933,gain,ns,0.00004,0.0000267,1.497551528,0.135267304,pos,ns,0.002377788,0.007815836,0.304226967,0.761159095,pos,ns,0.118524559,0.000102768,0.000268786,0.382340269,0.702470977,pos,ns,0.55797356,Ntm,Ntm_Intron,9,29827377,29827426,29827377,29827378,50,+,CGACACGCCATCTCAGTAACTGCAGAATGGCAGTTGTAAAAAATCCCATT,"Intron (Ntm-201/Ntm, intron 1 of 7)",9,28994750,29963129,968380,2,Ntm-201,135703,Ntm-201;Ntm-204;Ntm-210;Ntm-207,Ntm;Ntm;Ntm;Ntm,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,27,32,235106,ENSMUSG00000059974,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12639,cg03287707,-0.0000256,0.00000632,-4.058201282,0.0000627,loss,ns,0.0000161,0.0000107,1.497440894,0.13529606,pos,ns,-0.003005339,0.003143232,-0.956130235,0.339751459,neg,ns,0.46883867,0.000132195,0.000108095,1.222944348,0.222279594,pos,ns,0.865183469,Shisa6,Shisa6_Intron,11,66274035,66274084,66274035,66274036,50,+,CGGGCATGTTAACAAGATCATAAATTAGGAGGAGAAATGAAGCCAGATTT,"Intron (Gm12296-201/Gm12296-201, intron 1 of 2)",11,66211725,66525795,314071,2,Shisa6-202,251711,Shisa6-202;Shisa6-201,Shisa6;Shisa6,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,4,380702,ENSMUSG00000053930,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6247,cg00958552,0.000000261,0.00000157,0.166021525,0.868248235,gain,ns,-0.000004,0.00000267,-1.497316438,0.135328413,neg,ns,-0.000162423,0.000782578,-0.207548032,0.835718161,neg,ns,0.07794016,-0.0000171,0.0000269,-0.634149951,0.526450627,neg,ns,0.966234117,Pabpc1,Pabpc1_Exon,15,36600865,36600914,36600913,36600914,50,+,TGAACCTGGTATCTGGTGATCCTATCTTGTTTCATCTGTTCAAATTTGCG,"Exon (Pabpc1-201/Pabpc1, exon 6 of 15)",15,36595661,36608973,13313,2,Pabpc1-201,8059,Pabpc1-201;Pabpc1-206;Pabpc1-202;Pabpc1-204;Pabpc1-205;Pabpc1-207;Pabpc1-209;Pabpc1-210;Pabpc1-203;Pabpc1-208,Pabpc1;Pabpc1;Pabpc1;Pabpc1;Pabpc1;Pabpc1;Pabpc1;Pabpc1;Pabpc1;Pabpc1,0;-2846;-3439;-2553;-3129;0;-1103;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,4,18458,ENSMUSG00000022283,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19463,cg17482929,-0.00000149,0.00000129,-1.15928576,0.247231892,loss,ns,-0.00000327,0.00000218,-1.497110324,0.135382007,neg,ns,0.000879416,0.000639906,1.374290223,0.170344321,pos,ns,0.768672341,-0.0000634,0.000022,-2.880760181,0.004243719,neg,ns,0.972995919,Gm12685,Gm12685_Intergenic_downstream,4,99374910,99374959,99374910,99374911,50,+,CGGGGCCCATCACCATAATGGGTTCATCATAGCGCCATCTAAAATATTAA,Distal Intergenic,4,99418498,99418711,214,2,Gm12685-201,43752,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,13,13,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25252,cg18362686,0.0000278,0.00000421,6.60668619,1.71E-10,gain,yes,-0.0000107,0.00000715,-1.497078967,0.135390162,neg,ns,-0.001336436,0.002095888,-0.637646706,0.524174366,neg,ns,0.280524221,0.0000725,0.0000721,1.006445483,0.314986253,pos,ns,0.129773397,Cxxc4,Cxxc4_Exon,3,134240298,134240347,134240346,134240347,50,-,GAACAAGCTCAAATGCGGCGCTGCTGAAGCAGAGATAATGAATCTCCCCG,"Exon (Cxxc4-203/Cxxc4, exon 3 of 4)",3,134236484,134259620,23137,1,Cxxc4-204,3814,Cxxc4-204;Cxxc4-203;Cxxc4-202;Cxxc4-201;Cxxc4-205,Cxxc4;Cxxc4;Cxxc4;Cxxc4;Cxxc4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,18,20,319478,ENSMUSG00000044365,mapped to different genes,3,134240265,134240649,385,*,385,21,0.587012987,0.63362069,0.054545455,5.57E-11,CpGisland,TRUE,U3,Pr-B
13752,cg16506938,-0.000015,0.00000579,-2.582798014,0.01025839,loss,ns,0.0000147,0.00000984,1.496967522,0.135419148,pos,ns,0.00365676,0.002881912,1.268865693,0.205440874,pos,ns,0.687313146,-0.0000311,0.0000991,-0.314079792,0.753671691,neg,ns,0.904329837,Map3k20,Map3k20_Intron,2,72379242,72379291,72379242,72379243,50,+,CGTTGAACACTACATTGAAGATGAGCTCCTCACTGGAATTGGCGAGGCAG,"Intron (Map3k20-201/Map3k20, intron 8 of 19)",2,72285637,72442610,156974,1,Map3k20-201,93605,Map3k20-201;Map3k20-204;Map3k20-202;Map3k20-206,Map3k20;Map3k20;Map3k20;Map3k20,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,14,18,65964,ENSMUSG00000004085,mapped to different genes,2,72379242,72379383,142,*,142,11,0.563380282,0.991746032,0.077464789,0.00000016,CpGisland,TRUE,NA,NRS
9643,cg23628607,0.000000873,0.00000248,0.352125434,0.724983449,gain,ns,-0.0000063,0.00000421,-1.496847815,0.135450289,neg,ns,0.00606254,0.001233686,4.91416878,0.00000145,pos,ns,5.839576948,-0.000127671,0.0000424,-3.009238917,0.002833917,neg,ns,0.954895246,Rnf20,Rnf20_Exon,4,49655912,49655961,49655960,49655961,50,-,CGCAAATGTCCCAAGTGTAATGCTGCTTTTGGTGCCAATGATTTTCATCG,"Exon (Rnf20-210/Rnf20, exon 20 of 20)",4,49632060,49656886,24827,1,Rnf20-210,23852,Rnf20-210;Rnf20-201;Rnf20-203;Rnf20-205,Rnf20;Rnf20;Rnf20;Rnf20,0;0;5649;4944,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,109331,ENSMUSG00000028309,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9454,cg23442353,0.0000208,0.00000549,3.798341377,0.000175281,gain,ns,0.000014,0.00000932,1.496711233,0.135485826,pos,ns,0.008497794,0.002730686,3.11196308,0.002031565,pos,ns,2.692169382,-0.0000644,0.0000939,-0.686308727,0.493031442,neg,ns,0.105913554,Csmd3,Csmd3_fiveUTR,15,48791971,48792020,48791971,48791972,50,-,CGCGGTCACAGCTCGGAGTGAATGGTGTTTCTGGGATACCACAGCAACCT,Promoter (<=1kb),15,47580638,48791989,1211352,2,Csmd3-201,0,Csmd3-204;Csmd3-201;Csmd3-209;Csmd3-205;Csmd3-203,Csmd3;Csmd3;Csmd3;Csmd3;Csmd3,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,16,239420,ENSMUSG00000022311,conserved gene and region,15,48791819,48792094,276,*,276,17,0.550724638,0.814583333,0.061594203,8.17E-10,CpGisland,TRUE,U13,Hc-P
13863,cg02534659,-0.00000118,0.000004,-0.294418328,0.768635313,loss,ns,0.0000102,0.00000679,1.49651755,0.135536232,pos,ns,0.001130517,0.001989693,0.56818677,0.570319474,pos,ns,0.243881798,0.0000582,0.0000684,0.85121734,0.395305671,pos,ns,0.902021824,Rpl31-ps2,Rpl31-ps2_Intergenic_upstream,13,73117443,73117492,73117491,73117492,50,+,TCAGTAAAATGTACAAACGAGCCATCCATTTTATGATTCCGGAGTCAACG,Distal Intergenic,13,73233395,73233737,343,1,Rpl31-ps2-201,-115903,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,8,621486,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23997,cg16046465,0.0000406,0.00000584,6.952649322,2.13E-11,gain,yes,0.0000149,0.00000993,1.496493264,0.135542554,pos,ns,0.008599534,0.002908784,2.956401832,0.003351481,pos,ns,2.474763179,-0.0000535,0.000100033,-0.535154886,0.592926429,neg,ns,0.080930345,Frmd5,Frmd5_Exon,2,121806771,121806820,121806771,121806772,50,-,CGGTGCAGCTGTACTCGCGCTCCAGGCTCCTGCTGCTGCCGCTCATCAAC,Promoter (<=1kb),2,121545529,121807087,261559,2,Frmd5-207,267,Frmd5-207;Frmd5-204;Frmd5-201;Frmd5-208;Frmd5-209,Frmd5;Frmd5;Frmd5;Frmd5;Frmd5,0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,4,228564,ENSMUSG00000027238,conserved gene and region,2,121806321,121807123,803,*,803,98,0.742216687,0.88811394,0.122042341,9.87E-84,CpGisland,TRUE,U3,Pr-B
17867,cg21390528,-0.000000693,0.0000013,-0.53166406,0.59533946,loss,ns,0.00000331,0.00000222,1.496260681,0.135603106,pos,ns,-0.00021364,0.000649035,-0.329166477,0.742252135,neg,ns,0.129448544,0.0000125,0.0000223,0.561336401,0.574973783,pos,ns,0.031992926,Phf21a,Phf21a_Intron,2,92183412,92183461,92183460,92183461,50,-,AATGGGTGCCGCAGCACACCCCGTTCCTTAGGCAAAGTGAAATAAATTCG,"Intron (Phf21a-201/Phf21a, intron 1 of 15)",2,92093117,92364666,271550,1,Phf21a-201,90295,Phf21a-201;Phf21a-202;Phf21a-204;Phf21a-209;Phf21a-208;Phf21a-207;Phf21a-212;Phf21a-219;Phf21a-206;Phf21a-216;Phf21a-221;Phf21a-220;Phf21a-210;Phf21a-205;Phf21a-211,Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,21,192285,ENSMUSG00000058318,conserved gene but different region,2,92183394,92183855,462,*,462,72,0.787878788,1.004347826,0.155844156,9.30E-71,CpGisland,TRUE,U1,Pr-A
9881,cg03902953,-0.00000294,0.00000176,-1.67652863,0.094642792,loss,ns,0.00000446,0.00000298,1.496209357,0.135616471,pos,ns,0.001923544,0.000873884,2.201143228,0.028462681,pos,ns,1.545724192,-0.000117874,0.0000301,-3.922240011,0.000108064,neg,ns,0.950355365,Gm49908,Gm49908_Intergenic_upstream,17,51321933,51321982,51321933,51321934,50,+,CGGAACTCCTTTGGTGTTATTGCTTAATTTTAATTGTGATTGTAAAATGT,Distal Intergenic,17,51236771,51237062,292,2,Gm49908-201,-84871,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,9,9,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1050,cg22155227,0.00000747,0.00000501,1.491439207,0.136863091,gain,ns,0.0000127,0.0000085,1.496087803,0.135648128,pos,ns,0.003512387,0.002491209,1.409912792,0.159567924,pos,ns,0.797054405,0.000118846,0.0000857,1.387219381,0.166371385,pos,ns,0.916567395,Gm14481,Gm14481_Intergenic_downstream,X,11231436,11231485,11231484,11231485,50,+,TGTGGAAATTAGCCTTAGAAGTTGTAGACCCATTACTATTAGCTTTATCG,Distal Intergenic,20,11220607,11221235,629,1,Gm14481-201,10829,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,5,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20770,cg09938207,-0.00000483,0.00000135,-3.564966381,0.000421278,loss,ns,0.00000344,0.0000023,1.496083196,0.135649328,pos,ns,0.000500469,0.000674056,0.742473894,0.458362478,pos,ns,0.338790942,-0.0000344,0.0000232,-1.485415033,0.138450107,neg,ns,0.964442702,4930564D02Rik,4930564D02Rik_Intergenic_downstream,3,105095043,105095092,105095043,105095044,50,+,CGGTGAGATGAATCTTAATGAATAATGTCCTATGAATATTTAATTTTTGA,Distal Intergenic,3,105066844,105078806,11963,1,4930564D02Rik-201,28199,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,75269,ENSMUSG00000051788,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7130,cg04149186,-0.000017,0.00000699,-2.438349214,0.015315786,loss,ns,0.0000178,0.0000119,1.495959721,0.135681491,pos,ns,0.005619878,0.003479721,1.61503691,0.107319989,pos,ns,0.969319379,-0.000222873,0.000119667,-1.862436743,0.063487422,neg,ns,0.628345672,Tll2,Tll2_Intron,19,41190891,41190940,41190891,41190892,50,-,CGGCTTAAAGTGTGCAACTAAATAAGCAAAGCTTACATTAAAGTGACCCA,"Intron (Tll2-201/Tll2, intron 1 of 20)",19,41082753,41206835,124083,2,Tll2-201,15895,Tll2-201;Tll2-202,Tll2;Tll2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,4,24087,ENSMUSG00000025013,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27683,cg08534137,-0.00000133,0.00000275,-0.485432105,0.627712755,loss,ns,-0.00000699,0.00000467,-1.495936884,0.13568744,neg,ns,-0.001391401,0.001368255,-1.01691678,0.309986014,neg,ns,0.508657901,-0.0000504,0.0000471,-1.072030609,0.28454014,neg,ns,0.956350856,Akt3,Akt3_Exon,1,177096983,177097032,177097031,177097032,50,-,TCTTTCTTCAGAATCTTCATAGCATAGTATTTTCCACTTGCCTTCTCTCG,"Exon (Akt3-201/Akt3, exon 5 of 13)",1,177020073,177248805,228733,2,Akt3-201,151773,Akt3-201;Akt3-203;Akt3-202,Akt3;Akt3;Akt3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,14,23797,ENSMUSG00000019699,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15803,cg20548765,-0.000000753,0.000000708,-1.062872486,0.288667044,loss,ns,0.0000018,0.0000012,1.495689006,0.135752029,pos,ns,0.0000834,0.000352378,0.236779844,0.812983975,pos,ns,0.089918015,0.000000343,0.0000121,0.028344697,0.97740547,pos,ns,0.020147648,Dpf3,Dpf3_fiveUTR,12,83487676,83487725,83487676,83487677,50,-,CGCTTTCAGGGGGTTGTGAATGACAGTCGCCATTTTGCTACAATGTAACA,Promoter (<=1kb),12,83213751,83487716,273966,2,Dpf3-207,0,Dpf3-207;Dpf3-206,Dpf3;Dpf3,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,16,70127,ENSMUSG00000021221,conserved gene and region,12,83487566,83487704,139,*,139,13,0.54676259,1.273431994,0.09352518,7.48E-10,CpGisland,TRUE,U1,Pr-A
2073,cg07394293,0.0000126,0.00000294,4.28733341,0.0000242,gain,ns,-0.00000746,0.00000499,-1.495570336,0.135782958,neg,ns,-0.002344928,0.001462197,-1.603701651,0.109798144,neg,ns,0.959405002,0.000127771,0.0000503,2.540951931,0.01154238,pos,ns,0.062993696,Mmp16,Mmp16_Exon,4,17853782,17853831,17853830,17853831,50,+,TTTTCTTGCAAACCTTGCTTTGGATTTTATGTGCTACAGTCTGCGGAACG,Promoter (<=1kb),4,17852893,18117457,264565,1,Mmp16-206,889,Mmp16-206;Mmp16-204;Mmp16-201;Mmp16-202,Mmp16;Mmp16;Mmp16;Mmp16,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,6,17389,ENSMUSG00000028226,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19852,cg14397701,0.00000279,0.00000647,0.430924876,0.666822473,gain,ns,0.0000164,0.000011,1.495390474,0.135829847,pos,ns,-0.001962434,0.003221254,-0.609214356,0.542828573,neg,ns,0.2653373,0.0000978,0.000110779,0.882642256,0.378113507,pos,ns,0.839733168,Nlgn3,Nlgn3_Exon,X,101318120,101318169,101318120,101318121,50,+,CGCTACCACGTGGCCTTTGGCCCTGTGATTGATGGTGATGTCATTCCTGA,"Exon (Gm21986-201/Gm21986-201, exon 10 of 11)",20,101299168,101325963,26796,1,Nlgn3-202,18952,Nlgn3-202;Nlgn3-203;Nlgn3-206;Nlgn3-201;Nlgn3-204,Nlgn3;Nlgn3;Nlgn3;Nlgn3;Nlgn3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,11,16,245537,ENSMUSG00000031302,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7455,cg25341423,0.00000186,0.00000113,1.644428756,0.101101323,gain,ns,-0.00000288,0.00000193,-1.495254261,0.135865366,neg,ns,-0.000372733,0.000564323,-0.66049634,0.509425861,neg,ns,0.292919012,-0.00000589,0.0000194,-0.303730349,0.76153709,neg,ns,0.031823093,Pou3f3,Pou3f3_Exon,1,42693684,42693733,42693684,42693685,50,-,CGGGGTGCTGGCACCGACTATTCAAACGTCTGCACCTGGAGATCTCAGAT,Promoter (1-2kb),1,42694925,42703176,8252,1,Pou3f3-202,-1241,Pou3f3-202;Pou3f3-201,Pou3f3;Pou3f3,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,37,18993,ENSMUSG00000045515,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
13089,cg15666136,0.0000882,0.0000114,7.768785741,1.17E-13,gain,yes,-0.0000288,0.0000193,-1.494998695,0.135932025,neg,ns,0.02998193,0.00565236,5.304320499,0.000000216,pos,ns,6.666424681,-0.000948351,0.000194384,-4.878747619,0.00000171,neg,yes,0.345922031,Kdm6b,Kdm6b_Exon,11,69406399,69406448,69406399,69406400,50,-,CGCTGGAGTCCATCCGCGACCTCTGAACTCTGCTCTCTCTAAGGTCACTT,"Exon (Kdm6b-201/Kdm6b, exon 10 of 23)",11,69398508,69413675,15168,2,Kdm6b-201,7227,Kdm6b-201;Kdm6b-202,Kdm6b;Kdm6b,0;-2184,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,8,216850,ENSMUSG00000018476,conserved gene and region,11,69406336,69406459,124,*,124,10,0.661290323,0.766852195,0.080645161,0.000000493,CpGisland,TRUE,U10,Tr-S
8817,cg27088374,-0.0000389,0.000013,-3.004817816,0.002874233,loss,ns,-0.0000329,0.000022,-1.494869867,0.135965637,neg,ns,0.019703967,0.006450435,3.054672366,0.002448656,pos,ns,2.611072233,-0.000619389,0.00022183,-2.792178987,0.005560588,neg,ns,0.280626323,Clint1,Clint1_Exon,11,45884384,45884433,45884384,45884385,50,+,CGAATGTTAAAAGACAACAAAAAGAATTGGAGAAGAGTTTATAAGGTATG,"Exon (Clint1-201/Clint1, exon 3 of 12)",11,45851964,45910625,58662,1,Clint1-201,32420,Clint1-201;Clint1-202;Clint1-203,Clint1;Clint1;Clint1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,7,216705,ENSMUSG00000006169,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23113,cg16872932,0.0000953,0.000021,4.529273285,0.00000845,gain,ns,-0.0000534,0.0000357,-1.494830722,0.135975851,neg,ns,0.02509818,0.010469998,2.397152366,0.017114754,pos,ns,1.76662935,-0.00089874,0.000360062,-2.496067521,0.013077126,neg,ns,0.326806667,Rnf220,Rnf220_Intron,4,117304372,117304421,117304420,117304421,50,+,GTTTCGGCTTTATCGATCCGACGGGAATTTCACTTGCTGTGCAGATCCCG,"Intron (Rnf220-201/Rnf220, intron 3 of 14)",4,117271463,117497052,225590,2,Rnf220-201,192631,Rnf220-201;Rnf220-202;Rnf220-208;Rnf220-207,Rnf220;Rnf220;Rnf220;Rnf220,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,4,117304190,117304735,546,*,546,58,0.690476191,0.936645963,0.106227106,6.95E-46,CpGisland,TRUE,NA,NRS
26640,cg11464058,-0.00000528,0.00000179,-2.952028504,0.003397979,loss,ns,0.00000455,0.00000304,1.49467629,0.136016155,pos,ns,0.002720488,0.000890962,3.053426188,0.002458547,pos,ns,2.609321554,-0.000074,0.0000306,-2.415891463,0.016274566,neg,ns,0.96056857,Pex14,Pex14_Intron,4,149061863,149061912,149061863,149061864,50,-,CGGAGCTCACTCTAGTGAGGATATAAACGCGCTGTGGGAATCTACAGATT,"Intron (Pex14-201/Pex14, intron 2 of 8)",4,148960535,149099876,139342,2,Pex14-201,37964,Pex14-201;Pex14-202;Pex14-205;Pex14-203;Pex14-204,Pex14;Pex14;Pex14;Pex14;Pex14,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,41,48,56273,ENSMUSG00000028975,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10937,cg06700718,0.000127402,0.0000145,8.808349932,9.20E-17,gain,yes,-0.0000367,0.0000246,-1.494624429,0.136029691,neg,ns,0.018064899,0.007198789,2.509435882,0.012602075,pos,ns,1.899557939,-0.000590072,0.000247566,-2.383495849,0.017750921,neg,ns,0.406234873,Tcf7l2,Tcf7l2_Intron,19,55893083,55893132,55893083,55893084,50,+,CGAACAAAACTCTAATTTAGAATGTTCATCTAAGGGTTGATAATGGTATT,"Intron (Tcf7l2-213/Tcf7l2, intron 4 of 13)",19,55741820,55933229,191410,1,Tcf7l2-213,151263,Tcf7l2-213;Tcf7l2-201;Tcf7l2-208;Tcf7l2-211;Tcf7l2-212;Tcf7l2-206;Tcf7l2-204;Tcf7l2-205;Tcf7l2-222;Tcf7l2-215;Tcf7l2-214;Tcf7l2-207;Tcf7l2-202;Tcf7l2-209;Tcf7l2-210;Tcf7l2-217;Tcf7l2-220;Tcf7l2-218;Tcf7l2-203;Tcf7l2-216,Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,55,88,21416,ENSMUSG00000024985,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
8082,cg03601723,0.0000109,0.00000183,5.995070572,5.65E-09,gain,yes,0.00000463,0.0000031,1.494521555,0.136056546,pos,ns,-0.000525213,0.000908528,-0.578092031,0.563621679,neg,ns,0.249012311,0.0000897,0.0000312,2.870645701,0.00437819,pos,ns,0.023379466,Pax2,Pax2_Intergenic_upstream,19,44726451,44726500,44726451,44726452,50,+,CGCCATTGGGGTTAACGGTGCGGAAGAATACAAAAAAATTTCATTGAGGA,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-29545,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27006,cg08304325,-0.0000057,0.00000291,-1.959719617,0.050924302,loss,ns,0.00000738,0.00000494,1.494385236,0.136092138,pos,ns,0.003696246,0.001447438,2.55364713,0.011138475,pos,ns,1.953174255,-0.000119962,0.0000498,-2.409981106,0.016535544,neg,ns,0.933508185,Cpne1,Cpne1_fiveUTR,2,156098355,156098404,156098355,156098356,50,+,CGCTGAAACCACACACACCTGCAGATGAGAAAAGGCAACGGCCAGGTCAG,5' UTR,2,156071842,156111935,40094,2,Cpne1-217,13531,Cpne1-217;Cpne1-209;Cpne1-202;Cpne1-203;Cpne1-201;Cpne1-210;Cpne1-206;Cpne1-212;Cpne1-208;Cpne1-205;Cpne1-213;Cpne1-216;Gm28036-201;Gm28036-202;Gm28036-203;Gm28036-204;Gm28036-205;Gm28036-208;Gm28036-207;Gm28036-206;Rbm12-201;Rbm12-202;Rbm12-204;Rbm12-203;Rbm12-205,Cpne1;Cpne1;Cpne1;Cpne1;Cpne1;Cpne1;Cpne1;Cpne1;Cpne1;Cpne1;Cpne1;Cpne1;Gm28036;Gm28036;Gm28036;Gm28036;Gm28036;Gm28036;Gm28036;Gm28036;Rbm12;Rbm12;Rbm12;Rbm12;Rbm12,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;-1427;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,TRUE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,9,266692,ENSMUSG00000074643,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17648,cg19981759,0.00013272,0.00000911,14.57561101,5.17E-37,gain,yes,-0.0000231,0.0000155,-1.49422126,0.13613496,neg,ns,0.014869338,0.004531958,3.280996653,0.00115234,pos,ns,2.938419343,-0.000221197,0.000155854,-1.419261564,0.156827478,neg,ns,0.166321807,Zic1,Zic1_fiveUTR,9,91365750,91365799,91365750,91365751,50,-,CGGTGAGCGCGAGACTGATAGCAGCAATCATTCCTGCAGATAAATGAATT,Promoter (<=1kb),9,91358058,91365768,7711,2,Zic1-201,0,Zic1-201;Zic1-202;Zic1-203;Zic4-208;Zic4-206;Zic4-207;Zic4-211;Zic4-204;Zic4-203,Zic1;Zic1;Zic1;Zic4;Zic4;Zic4;Zic4;Zic4;Zic4,0;0;-2696;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,10,22771,ENSMUSG00000032368,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
2932,cg10441680,-0.00000112,0.00000285,-0.393128274,0.694494955,loss,ns,-0.00000724,0.00000484,-1.494088533,0.13616963,neg,ns,-0.002712361,0.001418779,-1.911757618,0.056829037,neg,ns,1.245429702,0.0000954,0.0000488,1.954807628,0.051504284,pos,ns,0.925157331,Ehbp1,Ehbp1_Exon,11,22068436,22068485,22068484,22068485,50,-,CCAGATCGAGCTTCTGCTATTAGCTGACGAGCTCTCTCTCTCAGCTGCCG,"Exon (Ehbp1-201/Ehbp1, exon 15 of 24)",11,22005828,22285838,280011,2,Ehbp1-201,217353,Ehbp1-201;Ehbp1-202;Ehbp1-207,Ehbp1;Ehbp1;Ehbp1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,11,45,216565,ENSMUSG00000042302,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25359,cg14299268,-0.000011,0.00000463,-2.371314692,0.018335837,loss,ns,-0.0000118,0.00000787,-1.494015043,0.136188829,neg,ns,-0.001616924,0.002304809,-0.70154377,0.483490051,neg,ns,0.315612459,0.0000089,0.0000793,0.112300317,0.910657972,pos,ns,0.892800686,Plcb4,Plcb4_Exon,2,135939973,135940022,135939973,135939974,50,+,CGGTAGACCAATTAGTGAGCTTTCTAAATGAAGTAAGCTTTTTCATACAT,"Exon (Plcb4-206/Plcb4, exon 11 of 29)",2,135659711,135983013,323303,1,Plcb4-206,280262,Plcb4-206;Plcb4-215;Plcb4-202;Plcb4-201;Plcb4-203;Plcb4-209,Plcb4;Plcb4;Plcb4;Plcb4;Plcb4;Plcb4,0;0;0;0;52279;-2051,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,18798,ENSMUSG00000039943,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23260,cg10203355,-0.00000149,0.00000128,-1.164851402,0.244974735,loss,ns,0.00000324,0.00000217,1.493929878,0.136211081,pos,ns,0.000747568,0.000634717,1.177798656,0.239780273,pos,ns,0.62018655,-0.00000417,0.0000218,-0.190903574,0.848726104,neg,ns,0.958306288,Eri3,Eri3_Intron,4,117634299,117634348,117634299,117634300,50,-,CGCGGGGCTGCTGATAGCAATCATTGATTAAGAGGGTAATTGTCCTGAAA,"Intron (Eri3-201/Eri3, intron 7 of 8)",4,117550365,117674297,123933,1,Eri3-201,83934,Eri3-201;Eri3-206;Eri3-203,Eri3;Eri3;Eri3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,82,97,140546,ENSMUSG00000033423,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17430,cg24159476,-0.00000776,0.00000292,-2.655859885,0.00831974,loss,ns,0.00000742,0.00000497,1.493769671,0.136252948,pos,ns,0.004719466,0.001455061,3.243482689,0.001309572,pos,ns,2.882870628,-0.000156761,0.00005,-3.132750027,0.001897184,neg,ns,0.929198051,Ankrd17,Ankrd17_Exon,5,90244063,90244112,90244111,90244112,50,-,GCTGGTGGAAAAGTACCTCCAAAGTGGGTCATGGGCAACCTTGGTGGACG,"Exon (Ankrd17-201/Ankrd17, exon 29 of 34)",5,90227166,90366577,139412,2,Ankrd17-201,122465,Ankrd17-201;Ankrd17-203;Ankrd17-202;Ankrd17-205;Ankrd17-207,Ankrd17;Ankrd17;Ankrd17;Ankrd17;Ankrd17,0;0;0;0;-4375,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,11,12,81702,ENSMUSG00000055204,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16930,cg00842370,0.0000544,0.0000122,4.467734726,0.0000111,gain,ns,0.0000309,0.0000207,1.49367432,0.13627787,pos,ns,0.02485859,0.006064119,4.099291298,0.000053,pos,ns,4.275868964,-0.000409728,0.000208545,-1.964702059,0.050341627,neg,ns,0.453958038,Snorc,Snorc_Promoter,1,87470211,87470260,87470211,87470212,50,+,CGATGTCCCAGGAGGACAGAGTTTGCATTGATGAAAACCCTTCCCAGCCC,Promoter (<=1kb),1,87470271,87475482,5212,1,Snorc-201,-11,Snorc-201;Snorc-202,Snorc;Snorc,-11;-2279,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,2,73234,ENSMUSG00000026258,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1831,cg11948823,0.0000056,0.00000301,1.864400462,0.063210451,gain,ns,-0.00000763,0.00000511,-1.493605811,0.136295779,neg,ns,0.0000229,0.001495726,0.015297535,0.987804649,pos,ns,0.005328934,-0.0000676,0.0000514,-1.314031355,0.189807167,neg,ns,0.942749217,Foxp2,Foxp2_threeUTR,6,15440203,15440252,15440203,15440204,50,-,CGTCACAGTAACTGCTACTTTTCATTATGTTTGTCTTTGGGTCATGATCA,3' UTR,6,14901349,15441977,540629,1,Foxp2-207,538854,Foxp2-207;Foxp2-205;Foxp2-204;Foxp2-201;Foxp2-206,Foxp2;Foxp2;Foxp2;Foxp2;Foxp2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,10,65,114142,ENSMUSG00000029563,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16626,cg13269407.2,-0.000503301,0.0000283,-17.76966498,3.32E-49,loss,yes,0.0000719,0.0000481,1.493430171,0.136341701,pos,ns,0.037580975,0.01409695,2.665894043,0.008080952,pos,ns,2.092537478,-0.001018574,0.000484793,-2.10104922,0.036443804,neg,ns,0.417218251,Wnt7b,Wnt7b_Intron,15,85653952,85654001,85653952,85653953,50,-,CGGGGCCCGGGGCTGTCAAGGAGAAAAACATCCCAAGGCCTGCAAATTGC,"Intron (Gm49539-201/Gm49539-201, intron 1 of 1)",15,85535441,85582473,47033,2,Wnt7b-205,-71528,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,7,22422,ENSMUSG00000022382,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8459,cg01740609,0.000122617,0.0000127,9.677525214,1.58E-19,gain,yes,-0.0000321,0.0000215,-1.493396207,0.136350583,neg,ns,0.018644616,0.006306155,2.956574281,0.00334966,pos,ns,2.474999281,-0.000245394,0.000216868,-1.131535628,0.258704276,neg,ns,0.352376361,Zeb2,Zeb2_Intergenic_upstream,2,45185045,45185094,45185093,45185094,50,-,GATCAAAGCCAAATCTCCCAGAATAGCTCCCTCCCAGGTTTCCTTTGGCG,Distal Intergenic,2,44983632,45117395,133764,2,Zeb2-212,-67699,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,9,158,24136,ENSMUSG00000026872,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
14002,cg21097107,-0.00000345,0.00000247,-1.397035786,0.16340201,loss,ns,0.00000626,0.00000419,1.493367896,0.136357986,pos,ns,0.003297218,0.001228155,2.684691245,0.007650158,pos,ns,2.116329619,-0.000129693,0.0000422,-3.070672719,0.002324874,neg,ns,0.945580605,Wdr72,Wdr72_Exon,9,74148317,74148366,74148365,74148366,50,+,GTCACAGTTACATCTATCAGCTGCTGAACAGGTGGGCTCAGATGGGAGCG,"Exon (Wdr72-201/Wdr72, exon 8 of 20)",9,74110356,74283203,172848,1,Wdr72-201,37961,Wdr72-201;Wdr72-205,Wdr72;Wdr72,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,2,546144,ENSMUSG00000044976,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7979,cg15358663,0.0000794,0.00000748,10.61030149,1.22E-22,gain,yes,-0.000019,0.0000127,-1.49329871,0.13637608,neg,ns,0.016572449,0.003724672,4.449371146,0.000012,pos,ns,4.920004524,-0.000467529,0.000128091,-3.649970554,0.000307685,neg,ns,0.128516268,Pax2,Pax2_Intergenic_upstream,19,44672177,44672226,44672177,44672178,50,+,CGGGGAAGGAATTGCGCAAAATAAAGAAGCATGTTCCAACAAGTCCTGTC,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-83819,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,19,44671992,44672192,201,*,201,20,0.666666667,0.897321429,0.099502488,1.62E-15,CpGisland,TRUE,U13,Hc-P
23153,cg14237002,-0.00002,0.00000442,-4.519227086,0.00000884,loss,ns,-0.0000112,0.00000751,-1.49327751,0.136381625,neg,ns,-0.004229679,0.00220076,-1.921918066,0.055532505,neg,ns,1.255452735,-0.000251341,0.0000757,-3.320925144,0.001004373,neg,ns,0.898587872,Cpsf6,Cpsf6_Exon,10,117361803,117361852,117361851,117361852,50,-,ATGCTGTGCCCCATATGCCATGGAATCCTAGTTTCCAGGAACAAAGGCCG,"Exon (Cpsf6-206/Cpsf6, exon 6 of 11)",10,117344673,117376970,32298,2,Cpsf6-201,15118,Cpsf6-201;Cpsf6-207;Cpsf6-206;Cpsf6-204;Cpsf6-208;Cpsf6-205;Cpsf6-203,Cpsf6;Cpsf6;Cpsf6;Cpsf6;Cpsf6;Cpsf6;Cpsf6,0;0;0;-859;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,432508,ENSMUSG00000055531,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21369,cg23230336,-0.0000568,0.00000897,-6.332402221,8.47E-10,loss,yes,0.0000228,0.0000152,1.493087712,0.136431274,pos,ns,-0.006942201,0.004464548,-1.554961394,0.120975553,neg,ns,0.917302386,0.000026,0.000153535,0.16922566,0.865729517,pos,ns,0.718245253,Glis1,Glis1_Intron,4,107502589,107502638,107502589,107502590,50,-,CGAGGAGAAGTCTATAAGATGTGTTCTTCATGTCTAGTATGTTGGGTTAT,"Intron (Glis1-205/Glis1, intron 2 of 2)",4,107434617,107563900,129284,1,Glis1-205,67972,Glis1-205;Glis1-201;Glis1-202,Glis1;Glis1;Glis1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,11,230587,ENSMUSG00000034762,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12837,cg25509984,-0.0000215,0.00000892,-2.411722749,0.016458259,loss,ns,0.0000226,0.0000152,1.493045189,0.136442399,pos,ns,0.010851381,0.004439908,2.444055666,0.015080269,pos,ns,1.821590915,-0.000403252,0.000152688,-2.641017277,0.008684595,neg,ns,0.816123813,Serbp1,Serbp1_threeUTR,6,67272190,67272239,67272190,67272191,50,+,CGGATCTCACAACTGGGGAACTGTCAAAGACGAATTAACGTTGGTATTCT,3' UTR,6,67266624,67297736,31113,1,Serbp1-201,5566,Serbp1-213;Serbp1-201;Serbp1-207;Serbp1-214;Serbp1-216;Serbp1-211;Serbp1-204;Serbp1-215;Serbp1-203;Serbp1-202;Serbp1-205;Serbp1-212;Serbp1-206;Serbp1-208;Serbp1-209;Serbp1-210,Serbp1;Serbp1;Serbp1;Serbp1;Serbp1;Serbp1;Serbp1;Serbp1;Serbp1;Serbp1;Serbp1;Serbp1;Serbp1;Serbp1;Serbp1;Serbp1,34014;0;0;5202;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,3,66870,ENSMUSG00000036371,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6977,cg10287351,-0.000105412,0.0000145,-7.258797323,3.16E-12,loss,yes,0.0000368,0.0000247,1.492894861,0.136481735,pos,ns,-0.000543853,0.007227735,-0.075245361,0.940068028,neg,ns,0.026840718,-0.000305653,0.000248561,-1.229689678,0.219745781,neg,ns,0.630299357,9330182O14Rik,9330182O14Rik_Intergenic_downstream,15,40314595,40314644,40314643,40314644,50,+,AAAAGCTTTTTGCCCTTTAAGAAAATGTTACAATAATTATCCCATGAACG,Distal Intergenic,15,40142188,40148689,6502,1,9330182O14Rik-201,172407,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,6,328531,ENSMUSG00000094112,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18709,cg18464061,-0.0000205,0.0000172,-1.190110809,0.23491345,loss,ns,-0.0000437,0.0000293,-1.492884722,0.136484389,neg,ns,-0.006943226,0.008582464,-0.809001511,0.419134736,neg,ns,0.377646345,-0.000045,0.00029515,-0.15251666,0.87887867,neg,ns,0.835099456,Tenm4,Tenm4_Intron,7,96785758,96785807,96785758,96785759,50,+,CGAGGCAAAATATAATTACATTTAAATTTGAGGGAACAGAATTTAATTCT,"Intron (Tenm4-201/Tenm4, intron 16 of 32)",7,96171246,96908569,737324,1,Tenm4-201,614512,Tenm4-201;Tenm4-203;Tenm4-202;Tenm4-210,Tenm4;Tenm4;Tenm4;Tenm4,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,26,23966,ENSMUSG00000048078,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17317,cg04515429,-0.0000187,0.0000113,-1.663081321,0.097306784,loss,ns,0.0000285,0.0000191,1.492851859,0.136492989,pos,ns,0.008345865,0.005599976,1.490339508,0.13715174,pos,ns,0.862798678,-0.000212421,0.000192583,-1.103011755,0.270877587,neg,ns,0.711777155,Agap1,Agap1_Intron,1,89674747,89674796,89674747,89674748,50,-,CGTATTAATTTTTCATTGCTGTGGAGAGTTGTACATACATAATCACTTGA,"Intron (Agap1-201/Agap1, intron 9 of 17)",1,89454806,89897617,442812,1,Agap1-201,219941,Agap1-201;Agap1-204;Agap1-202,Agap1;Agap1;Agap1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,29,347722,ENSMUSG00000055013,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21201,cg02593513,-0.0000554,0.0000129,-4.290205505,0.0000239,loss,ns,0.0000327,0.0000219,1.492768082,0.136514917,pos,ns,0.000752258,0.006426862,0.117049104,0.906896937,pos,ns,0.042442065,-0.000256674,0.000221019,-1.16131852,0.246405811,neg,ns,0.766577653,Mpped2,Mpped2_Exon,2,106744703,106744752,106744703,106744704,50,+,CGACCCCATCCCATATGACACTCCAAAACCAGCGGGCCACACGCGGTTTG,"Exon (Mpped2-202/Mpped2, exon 3 of 7)",2,106693269,106868356,175088,1,Mpped2-202,51434,Mpped2-202;Mpped2-206;Mpped2-201;Mpped2-203;Mpped2-204;Mpped2-205,Mpped2;Mpped2;Mpped2;Mpped2;Mpped2;Mpped2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,16,33,77015,ENSMUSG00000016386,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9856,cg08712796,0.0000274,0.0000108,2.545950354,0.011381819,gain,ns,-0.0000273,0.0000183,-1.492706062,0.136531151,neg,ns,-0.001120658,0.005366104,-0.208840124,0.834710205,neg,ns,0.078464277,0.0000439,0.00018454,0.237890114,0.812123479,pos,ns,0.750263792,Gm5040,Gm5040_Intergenic_upstream,10,51153887,51153936,51153935,51153936,50,-,AAGGCAATTCTGCAACTTCAAATGAGCCTAATTGGCTGAGCGCTCGGGCG,Distal Intergenic,10,51238829,51239628,800,1,Gm5040-201,-84942,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,11,268300,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20524,cg26274936,-0.0000172,0.00000479,-3.597097771,0.000374361,loss,ns,-0.0000121,0.00000814,-1.492678885,0.136538265,neg,ns,-0.00511059,0.002384591,-2.143172165,0.032877394,neg,ns,1.483102612,0.000201539,0.000082,2.457610545,0.014533635,pos,ns,0.909193867,Copz1,Copz1_Intron,15,103278408,103278457,103278456,103278457,50,+,TAACTCTCCCCATGTCTTGCCCTCCAAGAAGACCTTGTTATAGATTTCCG,"Intron (Copz1-202/Copz1, intron 1 of 6)",15,103272714,103296850,24137,1,Copz1-202,5694,Copz1-202;Copz1-203;Copz1-201;Copz1-204,Copz1;Copz1;Copz1;Copz1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,6,56447,ENSMUSG00000060992,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12197,cg15804249,0.000182235,0.0000221,8.239004606,4.94E-15,gain,yes,0.0000561,0.0000376,1.492614224,0.136555193,pos,ns,0.011371441,0.011008631,1.032956832,0.30242927,pos,ns,0.519376179,-0.002001551,0.000378586,-5.286913883,0.000000235,neg,yes,0.770820078,Map2k5,Map2k5_Intron,9,63327494,63327543,63327494,63327495,50,-,CGGAAAACACAGGCCAGTCAAATGTTTCTTATGAACTGTTGACACTATAT,"Intron (Map2k5-201/Map2k5, intron 7 of 21)",9,63163768,63377902,214135,2,Map2k5-201,50359,Map2k5-201,Map2k5,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,34,37,23938,ENSMUSG00000058444,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1605,cg18215648,-0.0000316,0.0000097,-3.262454185,0.001227726,loss,ns,-0.0000246,0.0000165,-1.492519593,0.13657997,neg,ns,-0.013545541,0.004826221,-2.806655778,0.005322743,neg,ns,2.273864475,0.000143011,0.000165973,0.861650113,0.389546087,pos,ns,0.819555798,Runx1t1,Runx1t1_Intron,4,13843874,13843923,13843922,13843923,50,+,TTCCTCAAAGGAGACATTAATGACAAAAACCATATGGTTGTGGGAACTCG,"Intron (Runx1t1-201/Runx1t1, intron 4 of 10)",4,13743436,13893649,150214,1,Runx1t1-201,100438,Runx1t1-201;Runx1t1-206;Runx1t1-204;Runx1t1-203;Runx1t1-202,Runx1t1;Runx1t1;Runx1t1;Runx1t1;Runx1t1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,24,12395,ENSMUSG00000006586,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1217,cg18482379,0.0000425,0.0000104,4.090775382,0.0000549,gain,ns,-0.0000263,0.0000176,-1.492487894,0.13658827,neg,ns,0.031009936,0.005167251,6.001244218,5.46E-09,pos,ns,8.262676965,-0.000546371,0.000177701,-3.074658706,0.002294947,neg,ns,0.173733435,Bcor,Bcor_Intron,X,12068286,12068335,12068334,12068335,50,-,CAAGGCGAAACTCGTTTTGCAAGCAACATTCCTACAGAAAATGGCACACG,"Intron (Bcor-202/Bcor, intron 1 of 14)",20,12036740,12080553,43814,2,Bcor-202,12218,Bcor-202;Bcor-203;Bcor-204;Bcor-206;Bcor-201;Bcor-207;Bcor-205,Bcor;Bcor;Bcor;Bcor;Bcor;Bcor;Bcor,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,56,74,71458,ENSMUSG00000040363,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7996,cg01658453,0.0000488,0.00000549,8.90157543,4.72E-17,gain,yes,-0.0000139,0.00000932,-1.492485623,0.136588865,neg,ns,0.00588792,0.002730412,2.156421668,0.031819551,pos,ns,1.497305948,-0.000107187,0.0000939,-1.141517593,0.254535595,neg,ns,0.08318474,Pax2,Pax2_Intergenic_upstream,19,44675016,44675065,44675064,44675065,50,+,AGCAAGGTGCAAATTCCTGGCATCTTTACTAGTTGCAGCCAATTTCGGCG,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-80980,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,19,44675061,44675159,99,*,99,13,0.696969697,1.086993243,0.131313131,7.58E-12,CpGisland,TRUE,U13,Hc-P
11883,cg19547070,5.25E-08,0.00000385,0.013649712,0.989118224,gain,ns,-0.00000976,0.00000654,-1.492354882,0.136623104,neg,ns,-0.002384409,0.001915536,-1.24477343,0.214155246,neg,ns,0.669271284,-0.0000276,0.0000659,-0.418428608,0.675923499,neg,ns,0.836635428,Tle3,Tle3_Exon,9,61416649,61416698,61416649,61416650,50,+,CGGATGACAAATACATTGTAACAGGCTCTGGTGACAAGAAGGCCACAGTT,"Exon (Tle3-218/Tle3, exon 20 of 20)",9,61372366,61418497,46132,1,Tle3-218,44283,Tle3-218;Tle3-204;Tle3-201;Tle3-215;Tle3-208;Tle3-217;Tle3-202;Tle3-210;Tle3-205;Tle3-211;Tle3-213;Tle3-203;Tle3-214,Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,30,21887,ENSMUSG00000032280,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18712,cg27050612,-0.0000398,0.00000318,-12.50322445,2.54E-29,loss,yes,0.00000807,0.00000541,1.492317047,0.136633014,pos,ns,0.000631116,0.001584525,0.39829971,0.69068345,pos,ns,0.16072095,-0.0000197,0.0000545,-0.361907834,0.717667472,neg,ns,0.112922563,Nfe2l1,Nfe2l1_Intron,11,96822820,96822869,96822868,96822869,50,-,GAGAGGAAAATCCCTGCATTTCCAACCACCTGATGCAACCAATGACAACG,"Intron (Nfe2l1-210/Nfe2l1, intron 1 of 3)",11,96817414,96824013,6600,2,Nfe2l1-210,1144,Nfe2l1-210;Nfe2l1-212;Nfe2l1-211;Nfe2l1-201;Nfe2l1-203;Nfe2l1-204;Nfe2l1-202;Nfe2l1-205;Nfe2l1-209;Nfe2l1-206;Nfe2l1-208;Nfe2l1-207,Nfe2l1;Nfe2l1;Nfe2l1;Nfe2l1;Nfe2l1;Nfe2l1;Nfe2l1;Nfe2l1;Nfe2l1;Nfe2l1;Nfe2l1;Nfe2l1,0;0;0;0;0;0;0;0;0;-95;0;6632,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,4,18023,ENSMUSG00000038615,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8714,cg24236358,-0.00000133,0.00000429,-0.310941338,0.756054193,loss,ns,0.0000109,0.00000728,1.492301909,0.136636979,pos,ns,0.00724375,0.002133591,3.395097808,0.000775332,pos,ns,3.110512571,-0.000224161,0.0000734,-3.055041704,0.002445732,neg,ns,0.920099875,Kcnn2,Kcnn2_Exon,18,45592363,45592412,45592411,45592412,50,+,CTCTTGGTTTTTAGTATCTCATTATGGATAATTGCCGCATGGACTGTCCG,"Exon (Kcnn2-205/Kcnn2, exon 6 of 11)",18,45269005,45685883,416879,1,Kcnn2-205,323358,Kcnn2-205;Kcnn2-201;Kcnn2-207;Kcnn2-206;Kcnn2-202;Kcnn2-208;Kcnn2-203;Kcnn2-209,Kcnn2;Kcnn2;Kcnn2;Kcnn2;Kcnn2;Kcnn2;Kcnn2;Kcnn2,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,8,140492,ENSMUSG00000054477,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2068,cg07607664,0.00000039,0.00000365,0.106662888,0.915125418,gain,ns,0.00000926,0.00000621,1.49229792,0.136638024,pos,ns,0.003640979,0.001818821,2.001834857,0.046173527,pos,ns,1.335606949,-0.0000993,0.0000625,-1.587840835,0.113341724,neg,ns,0.912145194,Etaa1,Etaa1_Intergenic_downstream,11,17812131,17812180,17812131,17812132,50,-,CGGAGGCAAGCATCTTTAAAATTACAGGCAACACTTTGTACAAATATGTG,Distal Intergenic,11,17938756,17953875,15120,2,Etaa1-201,141744,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,3,68145,ENSMUSG00000016984,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8090,cg11848212,0.0000991,0.00000853,11.62097032,3.71E-26,gain,yes,-0.0000216,0.0000145,-1.49212079,0.136684426,neg,ns,0.013108677,0.0042462,3.087154663,0.002203409,pos,ns,2.656904897,-0.000265595,0.000146026,-1.818816198,0.069904224,neg,ns,0.147027545,Pax2,Pax2_Intergenic_upstream,19,44734496,44734545,44734496,44734497,50,-,CGGAGTTGGAGACGATGATAAATATGATAATTTGTATAAAATCTGAATGG,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-21549,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,19,44734344,44734509,166,*,166,19,0.728915663,1.030718954,0.114457831,5.57E-16,CpGisland,TRUE,U13,Hc-P
23765,cg09853111,0.0000846,0.00000602,14.04900714,4.94E-35,gain,yes,-0.0000153,0.0000102,-1.4920905,0.136692362,neg,ns,-0.000851769,0.002996625,-0.284242811,0.776414076,neg,ns,0.1099066,0.000201996,0.000103054,1.960104533,0.050879087,pos,ns,0.171958176,Foxo6,Foxo6_Exon,4,120286865,120286914,120286865,120286866,50,-,CGCCTTTATCCTTGAAGTAGGGCACGTAACGGACCATCCAGTCGTAGATC,Promoter (<=1kb),4,120267079,120287349,20271,2,Foxo6-201,435,Foxo6-201,Foxo6,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,42,329934,ENSMUSG00000052135,conserved gene and region,4,120286820,120288190,1371,*,1371,160,0.728665208,0.879452187,0.116703136,1.00E-132,CpGisland,TRUE,U3,Pr-B
20253,cg03991032,0.00000487,0.00000167,2.914787963,0.003818492,gain,ns,0.00000423,0.00000284,1.492051415,0.136702603,pos,ns,0.003519889,0.000830794,4.236777964,0.0000299,pos,ns,4.523794263,-0.0000525,0.0000286,-1.837299876,0.067122681,neg,ns,0.048027388,Hoxc10,Hoxc10_Exon,15,102970980,102971029,102971028,102971029,50,+,GTCAAAATCTGGTTTCAAAATCGCAGAATGAAACTCAAGAAAATGAACCG,"Exon (Hoxc10-201/Hoxc10, exon 2 of 2)",15,102966796,102971893,5098,1,Hoxc10-201,4184,Hoxc10-201;Hoxc5-202,Hoxc10;Hoxc5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,21,209448,ENSMUSG00000022484,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
8970,cg21897172,0.0000357,0.000015,2.383852871,0.017734028,gain,ns,-0.000038,0.0000255,-1.492035392,0.136706801,neg,ns,0.000807278,0.007463223,0.108167517,0.913932788,pos,ns,0.039085742,-0.0000298,0.00025666,-0.116010608,0.907719249,neg,ns,0.451253835,4931429L15Rik,4931429L15Rik_Intergenic_upstream,9,46442903,46442952,46442903,46442904,50,-,CGTGTTGGGACGGGGCTAATGATAATTAACACTTGGGGCGCGTTTTGTCT,Distal Intergenic,9,46303361,46319986,16626,2,4931429L15Rik-201,-122966,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,12,22,74361,ENSMUSG00000056617,mapped to different genes,9,46442854,46443089,236,*,236,16,0.533898305,0.955223881,0.06779661,6.99E-10,CpGisland,TRUE,U13,Hc-P
24565,cg13108565,-0.0000378,0.00000612,-6.181073663,0.000000002,loss,yes,0.0000155,0.0000104,1.491715351,0.136790683,pos,ns,-0.006074621,0.003043799,-1.995736601,0.046837308,neg,ns,1.329408072,0.000259732,0.000104676,2.481297116,0.013620445,pos,ns,0.857079963,Maz,Maz_Exon,7,127023563,127023612,127023611,127023612,50,+,GATGGGTCTGCATGTGGCCGGCCAGCTGGGCAGGGGTCTTGCAGTGCACG,"Exon (Maz-203/Maz, exon 5 of 6)",7,127022130,127026526,4397,2,Maz-203,2914,Gm42742-201;Gm42742-203;Gm42742-204;Gm42742-202;Kif22-202;Kif22-201;Kif22-205;Maz-203;Maz-201;Maz-204;Maz-202;Maz-206;Maz-205;Prrt2-201;Prrt2-202;Prrt2-204;Prrt2-203;Prrt2-205;Prrt2-206;Prrt2-207,Gm42742;Gm42742;Gm42742;Gm42742;Kif22;Kif22;Kif22;Maz;Maz;Maz;Maz;Maz;Maz;Prrt2;Prrt2;Prrt2;Prrt2;Prrt2;Prrt2;Prrt2,0;0;0;0;5345;18859;4504;0;0;0;0;0;0;0;0;-3661;-3968;-2607;-2426;-3208,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,16,17,17188,ENSMUSG00000030678,conserved gene and region,7,127023537,127023683,147,*,147,10,0.700680272,0.560640732,0.068027211,0.00000233,CpGisland,TRUE,U12,Tr-I
24862,cg14678895,-0.00000242,0.0000011,-2.191718885,0.029143413,loss,ns,0.0000028,0.00000188,1.491449899,0.136860287,pos,ns,0.000197848,0.000549716,0.359909759,0.719159688,pos,ns,0.143174665,-0.00000264,0.0000189,-0.139542357,0.889112201,neg,ns,0.028910256,Zc3h6,Zc3h6_fiveUTR,2,128967790,128967839,128967790,128967791,50,+,CGTTCTTGACCAAACATGACAGACTCTGAACATGCAGGGCACGACAGGTC,Promoter (<=1kb),2,128967402,129018563,51162,1,Zc3h6-202,388,Zc3h6-202;Zc3h6-201,Zc3h6;Zc3h6,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,7,8,78751,ENSMUSG00000042851,conserved gene and region,2,128967149,128967791,643,*,643,69,0.6718507,0.959162055,0.107309487,8.30E-55,CpGisland,TRUE,U1,Pr-A
4750,cg05035791,-0.0000148,0.00000385,-3.845805091,0.00014585,loss,ns,0.00000976,0.00000654,1.491347964,0.136887023,pos,ns,-0.001003084,0.001917155,-0.523215019,0.601198412,neg,ns,0.220982175,-0.0000196,0.0000659,-0.296677614,0.766911322,neg,ns,0.909811891,Mecom,Mecom_Intron,3,30420666,30420715,30420714,30420715,50,+,AACATTTGACACTGGTCACAGGTCTGACAGGGATATGACTAATGAAGTCG,"Intron (Mecom-212/Mecom, intron 1 of 15)",3,29951299,30509733,558435,2,Mecom-212,89018,Mecom-212;Mecom-213;Mecom-207;Mecom-208;Mecom-211;Mecom-209,Mecom;Mecom;Mecom;Mecom;Mecom;Mecom,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,80,14013,ENSMUSG00000027684,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7811,cg20793031,-0.00000133,0.00000233,-0.571339385,0.56818359,loss,ns,0.00000591,0.00000397,1.491285858,0.136903314,pos,ns,0.00014135,0.00116179,0.121665867,0.903242474,pos,ns,0.044195648,-0.000024,0.00004,-0.600452062,0.548643711,neg,ns,0.93763854,Gm12455,Gm12455_Intergenic_downstream,4,44403890,44403939,44403938,44403939,50,+,ATCAGAGTGTTAAGAATCATTCACACCTCTTCCATTTGTCTAACCAACCG,Distal Intergenic,4,44382922,44383337,416,1,Gm12455-201,20968,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,15,15,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6559,cg09070708,0.0000186,0.00000656,2.83379305,0.004901618,gain,ns,-0.0000166,0.0000111,-1.491117547,0.136947472,neg,ns,0.000281451,0.003263657,0.086237995,0.931332901,pos,ns,0.030895055,-0.0000222,0.000112237,-0.197496991,0.843568069,neg,ns,0.853487545,Zfp536,Zfp536_Intron,7,37723492,37723541,37723540,37723541,50,-,CTCTCTTCATTACTTCAAAAAACCAATCATTAGACACCAGAGTATATACG,"Intron (Zfp536-202/Zfp536, intron 2 of 6)",7,37479104,37769624,290521,2,Zfp536-202,46083,Zfp536-202;Zfp536-201;Zfp536-203;Zfp536-206;Zfp536-209;Zfp536-208;Zfp536-205;Zfp536-207,Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,73,112,243937,ENSMUSG00000043456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18456,cg20424997,-9.08E-08,0.00000125,-0.072399358,0.942330784,loss,ns,0.00000318,0.00000213,1.490991017,0.136980675,pos,ns,0.000467512,0.000623876,0.74936645,0.454204629,pos,ns,0.342748444,-0.00000367,0.0000215,-0.171077264,0.864274624,neg,ns,0.967939593,Cnot1,Cnot1_Exon,8,95775295,95775344,95775343,95775344,50,+,CCACTGCTTTTACCATCGCCACTGAAATCCACATGCGAAAATAGGCAGCG,"Exon (Cnot1-202/Cnot1, exon 3 of 49)",8,95719451,95807462,88012,2,Cnot1-202,32118,Cnot1-202;Cnot1-201;Cnot1-203;Cnot1-216;Cnot1-217;Cnot1-207;Cnot1-209,Cnot1;Cnot1;Cnot1;Cnot1;Cnot1;Cnot1;Cnot1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,24,234594,ENSMUSG00000036550,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1409,cg06419952,1.71E-08,0.00000188,0.009106061,0.992740372,gain,ns,0.00000477,0.0000032,1.490972225,0.136985607,pos,ns,0.001728875,0.000936322,1.846454116,0.06577936,pos,ns,1.181910355,-0.0000809,0.0000322,-2.512476578,0.01249619,neg,ns,0.958754371,Med14,Med14_Exon,X,12706597,12706646,12706597,12706598,50,-,CGGTTATTTCTACCTTGTAATCGGAAAGTGCAATCAAGAAGAGAGCGGTC,"Exon (Med14-202/Med14, exon 17 of 31)",20,12675369,12762073,86705,2,Med14-202,55427,Med14-202;Med14-203;Med14-204;Med14-205;Med14-201,Med14;Med14;Med14;Med14;Med14,0;0;0;0;55427,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,7,26896,ENSMUSG00000064127,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
580,cg15605991,-0.00000279,0.00000154,-1.817222733,0.070148407,loss,ns,0.00000389,0.00000261,1.490918476,0.136999714,pos,ns,0.002087235,0.000765225,2.727610359,0.006743084,pos,ns,2.171141404,-0.0000173,0.0000263,-0.657221513,0.511526142,neg,ns,0.047960428,Tox,Tox_Promoter,4,6990127,6990176,6990127,6990128,50,-,CGAACAGCAGGAAGGAAAGAATCCGAGCAAATCGTGTCACTTTCCGCACA,Promoter (<=1kb),4,6686353,6990799,304447,2,Tox-201,623,Tox-201;Tox-203;Tox-204,Tox;Tox;Tox,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,1,15,252838,ENSMUSG00000041272,conserved gene and region,4,6990043,6990364,322,*,322,35,0.611801242,1.183823529,0.108695652,2.84E-28,CpGisland,TRUE,U1,Pr-A
9559,cg10988592,-0.0000199,0.0000117,-1.707403247,0.088748359,loss,ns,0.0000295,0.0000198,1.490834142,0.13702185,pos,ns,-0.002228372,0.005803738,-0.383954599,0.701275313,neg,ns,0.154111449,0.000102481,0.00019959,0.513455445,0.607998512,pos,ns,0.450170536,Foxg1,Foxg1_Promoter,12,49379482,49379531,49379530,49379531,50,+,TGGAAGGATGCTGAAATGACAGGCCTAGTAGACGCTTGTCTTAATCATCG,Promoter (3-4kb),12,49382660,49384364,1705,1,Foxg1-202,-3129,Foxg1-202;Foxg1-203;Foxg1-204;Foxg1-201,Foxg1;Foxg1;Foxg1;Foxg1,0;-3269;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,11,27,15228,ENSMUSG00000020950,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
22710,cg16851032,0.0000641,0.0000102,6.270651427,1.21E-09,gain,yes,-0.0000259,0.0000174,-1.490779588,0.137036171,neg,ns,0.004616595,0.005086499,0.907617381,0.364785402,pos,ns,0.43796255,-0.00016717,0.000174924,-0.95567095,0.339983149,neg,ns,0.789617587,Tex38,Tex38_Exon,4,115780426,115780475,115780426,115780427,50,-,CGCTTGTTAATCCAGTACAACAATGGGCTGTAGGTGAATGTGGCAGCTCT,Promoter (<=1kb),4,115779834,115781018,1185,2,Tex38-201,543,Atpaf1-205;Atpaf1-203;Atpaf1-207;Atpaf1-206;Efcab14-201;Tex38-201,Atpaf1;Atpaf1;Atpaf1;Atpaf1;Efcab14;Tex38,-4337;-4339;-4509;-4737;42353;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,75173,ENSMUSG00000044556,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23839,cg15712135,0.0000149,0.00000223,6.67865907,1.12E-10,gain,yes,-0.00000564,0.00000378,-1.49072757,0.137049828,neg,ns,0.001673398,0.001108483,1.509629275,0.132156594,pos,ns,0.878911164,-0.0000189,0.0000381,-0.495696404,0.620459845,neg,ns,0.039171581,En1,En1_Promoter,1,120600095,120600144,120600143,120600144,50,+,GTTAAGCCGTCAATAAAGTCATTTCTGTAAATGGTGTCTCCAAAGGGCCG,Promoter (2-3kb),1,120602418,120607992,5575,1,En1-201,-2274,En1-201,En1,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,23,36,13798,ENSMUSG00000058665,conserved gene and region,1,120600143,120600235,93,*,93,12,0.602150538,1.425287356,0.129032258,7.57E-11,CpGisland,TRUE,U13,Hc-P
17639,cg18030657,0.0000745,0.0000124,5.996168354,5.62E-09,gain,yes,-0.0000315,0.0000211,-1.490710064,0.137054424,neg,ns,0.008669869,0.006183324,1.402137253,0.1618748,pos,ns,0.790820755,-0.000307278,0.000212644,-1.445032672,0.149458765,neg,ns,0.335497482,Ifnar2,Ifnar2_Intergenic_upstream,16,91334446,91334495,91334446,91334447,50,+,CGGGTGGACAAAATGTAGTAAAAATTTTATGGGCCACTTGAGACATAGTG,Distal Intergenic,16,91372783,91405589,32807,1,Ifnar2-201,-38288,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,15976,ENSMUSG00000022971,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14076,cg22400231,0.0000138,0.0000137,1.008282345,0.314105286,gain,ns,0.0000347,0.0000233,1.490590344,0.137085859,pos,ns,0.006136471,0.00681814,0.900021373,0.36880749,pos,ns,0.433200268,0.000277685,0.000234475,1.18428302,0.237208263,pos,ns,0.119719963,Evx2,Evx2_Intergenic_downstream,2,74651225,74651274,74651273,74651274,50,-,ATTCTAAACATATGCATCGTAATCAGTTCGGTCACACTTACAAGAACACG,Distal Intergenic,2,74655616,74659419,3804,2,Evx2-202,8194,Evx2-201;Evx2-202,Evx2;Evx2,0;8145,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,35,14029,ENSMUSG00000001815,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
311,cg11311559,-0.0000431,0.00000876,-4.919237677,0.00000141,loss,yes,-0.0000222,0.0000149,-1.490536827,0.137099913,neg,ns,0.009543571,0.004357804,2.189995489,0.029269407,pos,ns,1.533586077,-0.000514781,0.000149865,-3.434977048,0.00067333,neg,ns,0.220310801,Klhl29,Klhl29_Intron,12,5088383,5088432,5088383,5088384,50,-,CGTCAGCTCAATCTGTCAGCTTCCTGCTTGAGAAGGATATGCTAATGACA,"Intron (Klhl29-201/Klhl29, intron 11 of 13)",12,5077472,5375682,298211,2,Klhl29-201,287250,Klhl29-201;Klhl29-202,Klhl29;Klhl29,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,23,208439,ENSMUSG00000020627,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6381,cg06846902,-0.0000303,0.00000465,-6.5150207,2.94E-10,loss,yes,-0.0000118,0.0000079,-1.490397401,0.137136533,neg,ns,-0.004867691,0.002313147,-2.104358234,0.036152122,neg,ns,1.441866201,0.0000786,0.0000795,0.987790406,0.324025654,pos,ns,0.883200218,Pknox2,Pknox2_Intron,9,37067659,37067708,37067707,37067708,50,+,TTAGCGCAATTGTTTCAGAGCCATTACAGAAAGACAATTACAAGGAAGCG,"Intron (Pknox2-207/Pknox2, intron 1 of 10)",9,36890982,37083309,192328,2,Pknox2-207,15601,Pknox2-207;Pknox2-201;Pknox2-202;Pknox2-206;Pknox2-204;Pknox2-205;Pknox2-208;Pknox2-210;Pknox2-209;Pknox2-212;Pknox2-211,Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,47,208076,ENSMUSG00000035934,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5089,cg21760034,-0.00000308,0.0000012,-2.565200782,0.010781904,loss,ns,0.00000304,0.00000204,1.490271103,0.137169711,pos,ns,0.001125969,0.000597684,1.883887068,0.060515977,pos,ns,1.218129951,-0.0000276,0.0000206,-1.342992886,0.180256707,neg,ns,0.037959129,Fbxo45,Fbxo45_Exon,16,32246486,32246535,32246534,32246535,50,+,TCTCTCACCTTGGCCTTGTAGCTGGGCAGGTTGCACAGGATGTCCGTGCG,Promoter (<=1kb),16,32230112,32247158,17047,2,Fbxo45-201,623,Fbxo45-201;Wdr53-203;Wdr53-204;Wdr53-201;Wdr53-202,Fbxo45;Wdr53;Wdr53;Wdr53;Wdr53,0;-692;-692;-718;-866,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,268882,ENSMUSG00000035764,conserved gene and region,16,32246530,32247305,776,*,776,107,0.74871134,0.997165778,0.137886598,5.36E-98,CpGisland,TRUE,U1,Pr-A
22112,cg15850080,-0.000015,0.0000103,-1.456435422,0.146284357,loss,ns,0.000026,0.0000175,1.490147093,0.137202294,pos,ns,0.019554963,0.005114947,3.823101984,0.000159291,pos,ns,3.797809364,-0.000650304,0.000175903,-3.696954152,0.000257972,neg,ns,0.789470962,Eif4g2,Eif4g2_Exon,7,111076796,111076845,111076796,111076797,50,-,CGTCCCATGGTGGGTGAAAATCTATCCTGGATAACTCCTGGACCAGTACC,"Exon (Eif4g2-213/Eif4g2, exon 13 of 22)",7,111067750,111083030,15281,2,Eif4g2-213,6185,Eif4g2-213;Eif4g2-206;Eif4g2-207;Eif4g2-208;Eif4g2-214;Eif4g2-202;Eif4g2-204;Eif4g2-211;Eif4g2-210;Eif4g2-209;Eif4g2-203;Eif4g2-201;Eif4g2-212;Eif4g2-205,Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2,0;0;0;0;-2547;-2097;-1411;-587;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,20,22,13690,ENSMUSG00000005610,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15505,cg04695454,-0.00000381,0.00000234,-1.627752087,0.104593352,loss,ns,0.00000593,0.00000398,1.490093752,0.137216311,pos,ns,0.00037003,0.001165721,0.317426046,0.751134036,pos,ns,0.124282558,-0.0000047,0.0000401,-0.117355797,0.906654108,neg,ns,0.959398602,Gm7503,Gm7503_Intergenic_upstream,18,81409843,81409892,81409843,81409844,50,-,CGCAGGTCGTTGACTATCCCTATTTAATTTGGGCAGTACAGGACATTTCT,Distal Intergenic,18,80997003,80997383,381,2,Gm7503-201,-412509,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,17,21,665124,NA,mapped to different genes,18,81409731,81409851,121,*,121,11,0.537190083,1.284749035,0.090909091,2.99E-08,CpGisland,TRUE,U15,NS
13771,cg04555097,-0.0000157,0.00000468,-3.347573358,0.000915671,loss,ns,0.0000118,0.00000795,1.49005625,0.137226166,pos,ns,-0.001666615,0.002327654,-0.716005994,0.474526641,neg,ns,0.3237394,0.0000485,0.00008,0.606252695,0.544790637,pos,ns,0.064318211,Rfx7,Rfx7_fiveUTR,9,72532818,72532867,72532818,72532819,50,+,CGATGGCAGAGGAACAACAACAGCCGCCACCACAGCAGCCTGATGCCCAT,Promoter (<=1kb),9,72532240,72622829,90590,1,Rfx7-202,578,Rfx7-202;Rfx7-201;Rfx7-206;Rfx7-203;Rfx7-205,Rfx7;Rfx7;Rfx7;Rfx7;Rfx7,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,8,319758,ENSMUSG00000037674,conserved gene but different region,9,72532745,72532949,205,*,205,13,0.697560976,0.60430839,0.063414634,0.000000089,CpGisland,TRUE,U1,Pr-A
3100,cg03133310,0.000041,0.00000527,7.776725117,1.11E-13,gain,yes,-0.0000133,0.00000896,-1.48978921,0.137296359,neg,ns,0.005478436,0.002624251,2.087618583,0.03764846,pos,ns,1.424252782,-0.000127318,0.0000902,-1.410758709,0.159318469,neg,ns,0.054913028,Lhfpl3,Lhfpl3_Exon,5,22746426,22746475,22746426,22746427,50,+,CGGCTTCTCCCGGGAGCTGACCTGCAGGGGCAGCTTCACGGACTTCTCCA,Promoter (<=1kb),5,22746059,23275597,529539,1,Lhfpl3-202,367,Lhfpl3-202,Lhfpl3,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,11,269629,ENSMUSG00000106379,conserved gene and region,5,22746271,22746758,488,*,488,33,0.610655738,0.733834587,0.067622951,9.76E-20,CpGisland,TRUE,U3,Pr-B
18095,cg19355530,0.000067,0.00000532,12.598369,1.14E-29,gain,yes,-0.0000135,0.00000904,-1.489736129,0.137310315,neg,ns,0.007786455,0.002647894,2.940621539,0.003522051,pos,ns,2.45320438,-0.0000839,0.0000911,-0.921202997,0.357660787,neg,ns,0.121505581,Gnao1,Gnao1_Exon,8,93811388,93811437,93811388,93811389,50,-,CGATTGAGAAAAACCTCAAAGAGGATGGCATCAGCGCCGCCAAAGACGTG,"Exon (Gnao1-202/Gnao1, exon 1 of 2)",8,93809966,93950403,140438,1,Gnao1-206,1422,Gnao1-206;Gnao1-202;Gnao1-201;Gnao1-203;Gnao1-207,Gnao1;Gnao1;Gnao1;Gnao1;Gnao1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,13,14681,ENSMUSG00000031748,conserved gene and region,8,93811274,93811435,162,*,162,16,0.648148148,0.965722802,0.098765432,1.97E-12,CpGisland,TRUE,U3,Pr-B
7890,cg27255867,0.0000805,0.00000821,9.806889483,5.96E-20,gain,yes,-0.0000208,0.0000139,-1.489693375,0.137321557,neg,ns,0.018010329,0.004086301,4.407489608,0.0000144,pos,ns,4.840724052,-0.000373524,0.000140528,-2.658012951,0.008267974,neg,ns,0.102633149,Ebf1,Ebf1_Exon,11,44620414,44620463,44620414,44620415,50,+,CGGGGTGGGTCTGGCCCGGGCTCACTTTGAGAAGCAGCCGCCTTCCAATC,"Exon (Ebf1-203/Ebf1, exon 2 of 16)",11,44617317,45004995,387679,1,Ebf1-203,3097,Ebf1-203;Ebf1-202;Ebf1-201;Ebf1-207;Ebf1-204;Ebf1-205,Ebf1;Ebf1;Ebf1;Ebf1;Ebf1;Ebf1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,15,80,13591,ENSMUSG00000057098,conserved gene and region,11,44620336,44620646,311,*,311,21,0.620578778,0.704530744,0.067524116,9.07E-13,CpGisland,TRUE,U3,Pr-B
13990,cg12417808,-0.00000376,0.00000154,-2.442415323,0.015147639,loss,ns,0.00000389,0.00000261,1.489667856,0.137328267,pos,ns,0.000231042,0.000765691,0.301743035,0.76305028,pos,ns,0.117446844,0.0000413,0.0000263,1.567664504,0.117979605,pos,ns,0.043349053,Usp46,Usp46_fiveUTR,5,74068239,74068288,74068239,74068240,50,+,CGGCCACTCACCATATTACAGATGGAGGCGATGTTTCGGACAGTCATTAG,Promoter (<=1kb),5,73998453,74068420,69968,2,Usp46-202,132,Usp46-202;Usp46-201;Usp46-204,Usp46;Usp46;Usp46,0;0;-2491,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,2,69727,ENSMUSG00000054814,conserved gene but different region,5,74067928,74068797,870,*,870,95,0.726436782,0.827824519,0.109195402,5.17E-76,CpGisland,TRUE,U1,Pr-A
7499,cg11572726,-0.0000191,0.00000839,-2.279972112,0.023288268,loss,ns,0.0000212,0.0000142,1.489634524,0.137337032,pos,ns,0.010350483,0.004174132,2.479673269,0.013681384,pos,ns,1.863869982,-0.000343906,0.000143548,-2.395757031,0.017178818,neg,ns,0.859871125,Mrps9,Mrps9_Intron,1,42897890,42897939,42897938,42897939,50,-,TGCCCTTTAAGTCAAGTATCTCTTGAATTTTTAAATAGCTTGATTGTTCG,"Intron (Mrps9-201/Mrps9, intron 7 of 10)",1,42851233,42905682,54450,1,Mrps9-201,46657,Mrps9-201;Mrps9-202;Mrps9-203;Mrps9-204;Mrps9-206,Mrps9;Mrps9;Mrps9;Mrps9;Mrps9,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,12,69527,ENSMUSG00000060679,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7276,cg05850866,-0.00000486,0.00000248,-1.960795167,0.050798043,loss,ns,0.00000627,0.00000421,1.489402106,0.137398162,pos,ns,0.003317584,0.001234206,2.688031772,0.007575801,pos,ns,2.12057144,-0.000103167,0.0000424,-2.430653087,0.015638573,neg,ns,0.954315358,Sorl1,Sorl1_Intergenic_downstream,9,41940096,41940145,41940096,41940097,50,+,CGGGAACTCACACGCTTTAGCCTACAATCTTATTCACAGATGCGTAAGTG,Distal Intergenic,9,41969739,41974587,4849,2,Sorl1-202,34442,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,6,20660,ENSMUSG00000049313,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4120,cg18257737,-0.0000581,0.00000828,-7.014541247,1.45E-11,loss,yes,0.0000209,0.0000141,1.489081938,0.137482405,pos,ns,-0.007717322,0.004120192,-1.873049284,0.062002498,neg,ns,1.207590815,0.000129497,0.000141693,0.913928765,0.361464551,pos,ns,0.906770621,Zfp703,Zfp703_Intergenic_upstream,8,26914369,26914418,26914369,26914370,50,+,CGCCCATTAAAGGTGATATGATGTATTTTCTGCCTTGTTCAGGAGTCCAT,Distal Intergenic,8,26977325,26978672,1348,1,Zfp703-204,-62907,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,11,353310,ENSMUSG00000085795,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2349,cg05330587,0.0000039,0.00000114,3.428402828,0.000689234,gain,ns,-0.00000288,0.00000193,-1.489052347,0.137490193,neg,ns,0.000148081,0.000565848,0.261697958,0.793728107,pos,ns,0.10032824,-0.00000919,0.0000195,-0.472035697,0.637233401,neg,ns,0.020082414,Tfap2d,Tfap2d_Exon,1,19104645,19104694,19104645,19104646,50,+,CGGGGAGCCCACCGACTTTATTAACCTGCACAATGCGCGGGCGCTCAAGT,"Exon (Tfap2d-201/Tfap2d, exon 2 of 8)",1,19103022,19166346,63325,1,Tfap2d-201,1623,Tfap2d-201;Tfap2d-202,Tfap2d;Tfap2d,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,23,226896,ENSMUSG00000042596,conserved gene and region,1,19104477,19104754,278,*,278,20,0.615107914,0.848336894,0.071942446,1.04E-12,CpGisland,TRUE,U13,Hc-P
2226,cg04770352,-0.0000139,0.00000321,-4.349948218,0.0000185,loss,ns,-0.00000811,0.00000545,-1.48903964,0.137493538,neg,ns,-0.0000241,0.001595271,-0.015120123,0.987946073,neg,ns,0.005266761,-0.0000248,0.0000549,-0.452414245,0.651287012,neg,ns,0.94148809,Gm30341,Gm30341_Intergenic_upstream,3,18705273,18705322,18705321,18705322,50,-,TCTTTCCTCTGTGGCCAATTAGTGACAATTCCACTTTTGCAAGACAGCCG,Distal Intergenic,3,18753077,18753365,289,1,Gm30341-201,-47804,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,17,23,102632201,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11764,cg15488194,-0.0000177,0.00000659,-2.690068131,0.007530794,loss,ns,0.0000167,0.0000112,1.488923617,0.137524078,pos,ns,-0.000550714,0.003280905,-0.167854384,0.866807288,neg,ns,0.062077446,0.0000518,0.00011283,0.458792218,0.646704882,pos,ns,0.062553922,Mbnl1,Mbnl1_Exon,3,60528305,60528354,60528353,60528354,50,+,TAAGTCACATCTGATGGACATTTTCTGTGCTTATAGCATAGTAATGAACG,"Exon (Mbnl1-208/Mbnl1, exon 1 of 2)",3,60472830,60595764,122935,1,Mbnl1-222,55475,Mbnl1-222;Mbnl1-221;Mbnl1-216;Mbnl1-220;Mbnl1-211;Mbnl1-204;Mbnl1-201;Mbnl1-209;Mbnl1-202;Mbnl1-225;Mbnl1-217;Mbnl1-203;Mbnl1-218;Mbnl1-208;Mbnl1-219;Mbnl1-214;Mbnl1-207;Mbnl1-205;Mbnl1-212,Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,19,36,56758,ENSMUSG00000027763,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
10938,cg07206688,-0.00000559,0.00000295,-1.89230616,0.059381796,loss,ns,0.00000747,0.00000501,1.488873242,0.13753734,pos,ns,0.003612041,0.00146909,2.458693107,0.014490744,pos,ns,1.838909311,-0.0000956,0.0000505,-1.891723906,0.05945966,neg,ns,0.949642224,Tcf7l2,Tcf7l2_Intron,19,55894217,55894266,55894217,55894218,50,-,CGTATTAATCTGGTTCCCAGTCTCTTGGGAGACACCTTAAGATGATGATA,"Intron (Tcf7l2-213/Tcf7l2, intron 4 of 13)",19,55741820,55933229,191410,1,Tcf7l2-213,152397,Tcf7l2-213;Tcf7l2-201;Tcf7l2-208;Tcf7l2-211;Tcf7l2-212;Tcf7l2-206;Tcf7l2-204;Tcf7l2-205;Tcf7l2-222;Tcf7l2-215;Tcf7l2-214;Tcf7l2-207;Tcf7l2-202;Tcf7l2-209;Tcf7l2-210;Tcf7l2-217;Tcf7l2-220;Tcf7l2-218;Tcf7l2-203;Tcf7l2-216;Tcf7l2-219;Tcf7l2-221,Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,55,88,21416,ENSMUSG00000024985,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8290,cg21681084,0.00000154,0.00000167,0.925414176,0.355470337,gain,ns,-0.00000421,0.00000283,-1.488823522,0.13755043,neg,ns,-0.00069372,0.000829237,-0.836575966,0.403475364,neg,ns,0.394182978,-0.00000631,0.0000285,-0.221247571,0.82504533,neg,ns,0.959126379,Ebf1,Ebf1_Intron,11,44963576,44963625,44963624,44963625,50,+,ACTTTCCCTGGTGCGTGTTCAAGTTCCAGTAAACCGTGTCTTATTGTGCG,"Intron (Ebf1-203/Ebf1, intron 10 of 15)",11,44617317,45004995,387679,1,Ebf1-203,346259,Ebf1-203;Ebf1-202;Ebf1-201;Ebf1-206,Ebf1;Ebf1;Ebf1;Ebf1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,80,13591,ENSMUSG00000057098,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8429,cg00323965,0.0000114,0.00000174,6.567907252,2.15E-10,gain,yes,-0.00000439,0.00000295,-1.488819756,0.137551421,neg,ns,-0.000540885,0.000864739,-0.625489567,0.532109984,neg,ns,0.273998592,0.0000411,0.0000297,1.382491915,0.167815866,pos,ns,0.048031137,Zeb2,Zeb2_fiveUTR,2,45113124,45113173,45113124,45113125,50,-,CGCGCCACCTATCTTTGTGGGGAGGGATAATTGAAGCGCCCTGAGCGTGA,5' UTR,2,44983632,45117395,133764,2,Zeb2-212,4222,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219;Zeb2-211;Zeb2-210;Zeb2-205;Zeb2-223;Zeb2-217;Zeb2-225;Zeb2-204;Zeb2-206;Zeb2-230,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;-3048;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,15,158,24136,ENSMUSG00000026872,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
6231,cg05232130,-0.00000814,0.00000291,-2.800908782,0.005416035,loss,ns,0.00000735,0.00000494,1.488727092,0.13757582,pos,ns,0.000376399,0.001446335,0.260243059,0.794849061,pos,ns,0.099715335,-0.0000268,0.0000497,-0.53785584,0.591062492,neg,ns,0.953872977,Tenm2,Tenm2_Intron,11,36476014,36476063,36476014,36476015,50,-,CGACATGACCTTTTGCATGGTGTAAAATATGGCCGCCACAACATCTGTGC,"Intron (Tenm2-202/Tenm2, intron 4 of 30)",11,36006656,37235882,1229227,2,Tenm2-202,759819,Tenm2-202;Tenm2-208;Tenm2-201;Tenm2-204;Tenm2-205;Tenm2-206,Tenm2;Tenm2;Tenm2;Tenm2;Tenm2;Tenm2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,47,84,23964,ENSMUSG00000049336,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18790,cg21615655,-0.00000307,0.00000205,-1.498844658,0.134931557,loss,ns,-0.00000518,0.00000348,-1.488420706,0.137656517,neg,ns,0.000178772,0.001020332,0.175209288,0.86102957,pos,ns,0.064981934,-0.000039,0.0000351,-1.112795607,0.266658381,neg,ns,0.945782445,Alg8,Alg8_Exon,7,97388452,97388501,97388500,97388501,50,-,TCTATTTTCTGTCTTTGGTTTAAACCCCAAGGGCCCAGAGGCTTTCTCCG,"Exon (Alg8-201/Alg8, exon 10 of 13)",7,97371606,97392185,20580,1,Alg8-201,16846,Alg8-201;Alg8-204;Alg8-202;Alg8-206;Alg8-205;Alg8-203,Alg8;Alg8;Alg8;Alg8;Alg8;Alg8,0;0;0;0;0;-2277,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,381903,ENSMUSG00000035704,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2763,cg22527167,0.0000264,0.0000101,2.623530458,0.009132841,gain,ns,0.0000254,0.0000171,1.488111756,0.137737927,pos,ns,0.003844992,0.005006164,0.768051684,0.443041133,pos,ns,0.353555951,-0.000239285,0.000172162,-1.389883862,0.165561401,neg,ns,0.118263423,Prdm13,Prdm13_Promoter,4,21686165,21686214,21686165,21686166,50,+,CGACAAACCAGTTTTGGGAAATAAGTGACTACTTTAAGTCTACTTGGCTG,Promoter (<=1kb),4,21677481,21685963,8483,2,Prdm13-202,-202,Prdm13-205;Prdm13-201;Prdm13-202;Prdm13-203;Prdm13-206;Prdm13-204,Prdm13;Prdm13;Prdm13;Prdm13;Prdm13;Prdm13,0;0;0;0;0;-320,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,19,23,230025,ENSMUSG00000040478,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
7513,cg01962309,-0.0000177,0.0000096,-1.841233958,0.066542627,loss,ns,-0.0000243,0.0000163,-1.48802562,0.13776063,neg,ns,-0.010071741,0.004778524,-2.107709759,0.035858734,neg,ns,1.445405046,0.000183859,0.000164333,1.118817978,0.264083988,pos,ns,0.800444568,Hpse2,Hpse2_Exon,19,42931604,42931653,42931604,42931605,50,-,CGAGTTTTCAGGAAGTCCATCACCTTGACCACCCGGCCATCAATGTAGCA,"Exon (Hpse2-201/Hpse2, exon 7 of 12)",19,42786539,43388355,601817,2,Hpse2-201,456702,Hpse2-201;Hpse2-203,Hpse2;Hpse2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,6,545291,ENSMUSG00000074852,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11496,cg21670996,0.0000142,0.00000316,4.487407637,0.0000102,gain,ns,-0.00000799,0.00000537,-1.487828409,0.137812622,neg,ns,-0.002774409,0.001573103,-1.76365351,0.078775356,neg,ns,1.103609627,0.0000453,0.0000541,0.836837096,0.403328772,pos,ns,0.960478555,Nptn,Nptn_Exon,9,58618734,58618783,58618782,58618783,50,+,GTCGGGAGCCCCACGCCAGAGATCCAGTGGTGGTACGCAGAAGTCAACCG,"Exon (Nptn-212/Nptn, exon 2 of 8)",9,58582240,58651318,69079,1,Nptn-212,36494,Nptn-212;Nptn-201;Nptn-213;Nptn-206;Nptn-203;Nptn-202;Nptn-211;Nptn-207;Nptn-204,Nptn;Nptn;Nptn;Nptn;Nptn;Nptn;Nptn;Nptn;Nptn,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,20,22,20320,ENSMUSG00000032336,conserved gene and region,9,58618678,58618932,255,*,255,20,0.6,0.879917184,0.078431373,1.96E-13,CpGisland,TRUE,NA,NRS
8226,cg02979795,0.0000454,0.00000851,5.339683948,0.00000018,gain,yes,0.0000215,0.0000145,1.487505894,0.137897681,pos,ns,0.005395745,0.004234892,1.274116247,0.203576563,pos,ns,0.691272222,0.000122451,0.000145638,0.840790241,0.401113502,pos,ns,0.172369874,Gm5246,Gm5246_Intergenic_downstream,19,44882721,44882770,44882721,44882722,50,+,CGCCCGGGCTGCCTGTTCCAATATTAGATATAAACAAGTAAACTGTGTAA,Distal Intergenic,19,44851009,44851979,971,1,Gm5246-201,31712,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,20,383450,NA,mapped to different genes,19,44882499,44882726,228,*,228,27,0.671052632,1.080758427,0.118421053,5.25E-23,CpGisland,TRUE,U3,Pr-B
12700,cg18531946,-0.00000259,0.00000762,-0.339301241,0.734612547,loss,ns,-0.0000193,0.0000129,-1.487203748,0.137977406,neg,ns,-0.010945753,0.003792202,-2.886384722,0.004170581,neg,ns,2.37980349,0.00023531,0.000130413,1.804340201,0.072148461,pos,ns,0.799283269,Gm6555,Gm6555_Intergenic_upstream,3,66797909,66797958,66797909,66797910,50,-,CGAAGAGGGCACTAATTGCATGTTAGAGCTGAGGATTAGATTATGAAACG,Distal Intergenic,3,66882350,66883138,789,1,Gm6555-201,-84441,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,10,625115,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22575,cg12652018,-0.0000415,0.00000601,-6.897780504,2.98E-11,loss,yes,0.0000152,0.0000102,1.48693701,0.138047817,pos,ns,-0.003986607,0.002991798,-1.332511787,0.183670702,neg,ns,0.735960113,0.00000959,0.000102888,0.093256087,0.925760358,pos,ns,0.85979243,Gm17482,Gm17482_Exon,6,115254176,115254225,115254176,115254177,50,+,CGTTCCCTGTGGTGGTGAAGATTGGCCACGCTCACTCAGGCATGGGCAAG,"Exon (Syn2-205/Syn2, exon 6 of 11)",6,115227343,115259294,31952,1,Gm17482-201,26833,Gm17482-201;Syn2-205;Syn2-202;Syn2-201;Syn2-203;Syn2-206;Syn2-207;Timp4-201;Timp4-202,Gm17482;Syn2;Syn2;Syn2;Syn2;Syn2;Syn2;Timp4;Timp4,0;0;0;0;0;0;0;-1971;-2328,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17526,cg11781618,-0.00000398,0.0000027,-1.473653135,0.141589696,loss,ns,0.00000682,0.00000459,1.48691452,0.138053755,pos,ns,0.001869131,0.001344377,1.390332534,0.165425301,pos,ns,0.781398066,-0.0000818,0.0000462,-1.769924657,0.077722623,neg,ns,0.935096142,Nrxn1,Nrxn1_Intron,17,90702065,90702114,90702065,90702066,50,-,CGATCGTTACTTAAAAAATATGATGGTCTCTACCATGTTAGTACATTTTT,"Intron (Nrxn1-202/Nrxn1, intron 5 of 20)",17,90033631,91088907,1055277,2,Nrxn1-202,386793,Nrxn1-202;Nrxn1-207;Nrxn1-216;Nrxn1-209;Nrxn1-201;Nrxn1-206;Nrxn1-208;Nrxn1-210;Nrxn1-224;Nrxn1-205;Nrxn1-203,Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,27,18189,ENSMUSG00000024109,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21252,cg22719807,-0.00000101,0.00000163,-0.621966126,0.534421299,loss,ns,0.00000411,0.00000276,1.486855306,0.13806939,pos,ns,0.002494087,0.000809653,3.080441616,0.002252158,pos,ns,2.64740114,-0.0000762,0.0000278,-2.734927146,0.006598522,neg,ns,0.96340413,Kif2a,Kif2a_fiveUTR,13,106993891,106993940,106993939,106993940,50,-,ACACTTTCATTATCTTCATTTAAAGATGTTACCATTGCTTGATGTATTCG,Promoter (<=1kb),13,106987327,106993920,6594,2,Kif2a-205,0,Kif2a-201;Kif2a-204;Kif2a-206;Kif2a-202;Kif2a-203;Kif2a-205,Kif2a;Kif2a;Kif2a;Kif2a;Kif2a;Kif2a,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,5,16563,ENSMUSG00000021693,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16076,cg10349289,0.00000314,0.00000218,1.437778171,0.151505667,gain,ns,-0.00000551,0.0000037,-1.486725578,0.138103648,neg,ns,-0.00147806,0.001085286,-1.361907929,0.174215781,neg,ns,0.758912507,0.0000206,0.0000373,0.553170112,0.580545629,pos,ns,0.940575333,Acaca,Acaca_Intron,11,84361998,84362047,84361998,84361999,50,-,CGGCGTGTATTTGCTAGAATGTCAAAGTTATGAGTTTATTTTGTAATGAT,"Intron (Acaca-202/Acaca, intron 45 of 55)",11,84173122,84401651,228530,1,Acaca-202,188876,Acaca-202;Acaca-201,Acaca;Acaca,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,28,28,107476,ENSMUSG00000020532,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1490,cg16242568,-0.00000186,0.0000022,-0.843905113,0.399373167,loss,ns,0.00000557,0.00000374,1.486484008,0.13816746,pos,ns,-0.0000676,0.001096968,-0.061616809,0.950907697,neg,ns,0.021861637,0.00005,0.0000377,1.324287783,0.186383017,pos,ns,0.952975437,Gm11819,Gm11819_Intergenic_upstream,4,13248601,13248650,13248601,13248602,50,+,CGGGACTCAGTGTGGCCACTGCAATATAACCAGTAAGTAACACACGCAGC,Distal Intergenic,4,13444770,13445141,372,1,Gm11819-201,-196120,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,19,22,,NA,mapped to different genes,4,13248547,13248714,168,*,168,12,0.535714286,0.997525977,0.071428571,8.86E-08,CpGisland,TRUE,U15,NS
10089,cg09871315,0.00020447,0.0000174,11.76735477,1.12E-26,gain,yes,-0.0000439,0.0000295,-1.486252036,0.138228758,neg,ns,0.032361884,0.008648238,3.742020349,0.000217481,pos,ns,3.662579417,-0.000642457,0.000297412,-2.160157829,0.031526608,neg,ns,0.259247695,Gm28308,Gm28308_Intron,6,52165194,52165243,52165194,52165195,50,-,CGCATTGTTTGGGACTGTCGGGAAGACGCCTCGCACCTCACAAATCATTT,"Intron (Gm28308-201/Gm28308, intron 3 of 3)",6,52163359,52213339,49981,2,Gm28308-201,48096,Gm28308-201;Hoxa2-201;Hoxa3-201,Gm28308;Hoxa2;Hoxa3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,46,103,,NA,mapped to different genes,6,52165135,52165261,127,*,127,10,0.637795276,0.819354839,0.078740158,0.000000615,CpGisland,TRUE,NA,NRS
3041,cg13814560,-0.000000966,0.00000214,-0.450453363,0.652698445,loss,ns,0.00000541,0.00000364,1.486238561,0.138232319,pos,ns,0.002388336,0.001067028,2.238307207,0.02591072,pos,ns,1.586520527,-0.0000981,0.0000367,-2.672527414,0.007926498,neg,ns,0.945347215,Lrmda,Lrmda_Intron,14,22473457,22473506,22473505,22473506,50,-,TCCTTAATGAAGTCAATATCTTGTCTTTTAGCTGTCTGTCTATTGGGGCG,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,453745,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206;Lrmda-202,Lrmda;Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26696,cg10169142,-0.00000413,0.00000189,-2.18693279,0.029494477,loss,ns,0.00000477,0.00000321,1.486225539,0.138235761,pos,ns,-0.000439122,0.000940306,-0.46699928,0.640828447,neg,ns,0.193258218,-0.00000685,0.0000323,-0.211983926,0.832258881,neg,ns,0.952020843,Wnk3,Wnk3_threeUTR,X,151293999,151294048,151293999,151294000,50,-,CGGCAGTCAACCAGCTTTTTCAAGAGATCAAAAGTCCGTCAAGGTAGTGT,3' UTR,20,151198078,151315186,117109,1,Wnk3-205,95921,Wnk3-205;Wnk3-206;Wnk3-204;Wnk3-201;Wnk3-203,Wnk3;Wnk3;Wnk3;Wnk3;Wnk3,0;0;0;0;-472,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,3,279561,ENSMUSG00000041245,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1279,cg08008510,0.000000387,0.000000915,0.422725973,0.672788274,gain,ns,0.00000231,0.00000155,1.486223762,0.13823623,pos,ns,0.000600378,0.00045528,1.318700769,0.188242532,pos,ns,0.725282243,-0.0000309,0.0000157,-1.971922035,0.049507251,neg,ns,0.973097365,Zfr,Zfr_Exon,15,12170798,12170847,12170846,12170847,50,-,CAATTCAATCCATTTTAGATGTAACCTCGGGTATGGTGAAAGACCCACCG,"Exon (Zfr-201/Zfr, exon 16 of 20)",15,12117831,12185683,67853,1,Zfr-201,52967,Zfr-201;Zfr-207;Zfr-208;Zfr-209;Zfr-206,Zfr;Zfr;Zfr;Zfr;Zfr,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,12,22763,ENSMUSG00000022201,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10102,cg06719282,-0.00000198,0.0000022,-0.896889848,0.370473673,loss,ns,0.00000556,0.00000374,1.485986063,0.138299066,pos,ns,0.001718907,0.001096985,1.566936832,0.118149628,pos,ns,0.927567642,-0.0000976,0.0000377,-2.585931281,0.010167598,neg,ns,0.941405115,Gm19197,Gm19197_Intergenic_downstream,17,52176691,52176740,52176739,52176740,50,+,TGGTATTGATTTAATTTAGCATGTGTTATTCATCTGCATGCCTCACAACG,Distal Intergenic,17,52008967,52009569,603,1,Gm19197-201,167724,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,11,100418416,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25672,cg16747818,-0.00000511,0.00000503,-1.015500828,0.31065906,loss,ns,0.0000127,0.00000855,1.485912186,0.1383186,pos,ns,0.002727536,0.002504437,1.089081414,0.276963892,pos,ns,0.557576847,-0.0000795,0.0000861,-0.922763595,0.356848047,neg,ns,0.897084207,Il1rapl2,Il1rapl2_Exon,X,138220419,138220468,138220467,138220468,50,+,TTGACTGTTGCAGAGAATGAATCAGGCCTGTGCTACAACAGCAGGATCCG,"Exon (Il1rapl2-202/Il1rapl2, exon 4 of 11)",20,137570608,138846946,1276339,1,Il1rapl2-202,649811,Il1rapl2-202;Il1rapl2-203;Il1rapl2-201,Il1rapl2;Il1rapl2;Il1rapl2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,60367,ENSMUSG00000059203,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14118,cg24704298,0.000000301,0.00000214,0.140569841,0.888301068,gain,ns,-0.0000054,0.00000364,-1.485220342,0.138501634,neg,ns,-0.00138206,0.001066054,-1.296425508,0.195793168,neg,ns,0.708202468,0.0000162,0.0000367,0.442735927,0.658265518,pos,ns,0.927220018,Birc6,Birc6_threeUTR,17,74686180,74686229,74686180,74686181,50,+,CGTCGCTGATTGCTTTTACCATGTTGGATCCATTGTCAGTCTCAAAGACC,3' UTR,17,74528295,74703356,175062,1,Birc6-202,157885,Birc6-202;Birc6-204;Birc6-213;Birc6-218;Birc6-220;Birc6-221;Birc6-215,Birc6;Birc6;Birc6;Birc6;Birc6;Birc6;Birc6,0;0;0;0;0;0;15973,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,10,12211,ENSMUSG00000024073,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5650,cg12295581,-0.00000617,0.00000634,-0.97330871,0.331158742,loss,ns,0.000016,0.0000108,1.485219341,0.138501898,pos,ns,0.012364258,0.00315631,3.917313841,0.000110188,pos,ns,3.957864259,-0.000367737,0.000108545,-3.387871019,0.000795293,neg,ns,0.879062552,Fam13b,Fam13b_Exon,18,34497483,34497532,34497483,34497484,50,+,CGAAGCCACTCCACTGTCTCAGCATTTCCATTGACTTGAAAAAGTCCTTG,"Exon (Fam13b-201/Fam13b, exon 4 of 21)",18,34442351,34506823,64473,2,Fam13b-201,9291,Fam13b-201;Fam13b-206;Fam13b-212;Fam13b-209;Fam13b-203;Fam13b-213;Fam13b-205,Fam13b;Fam13b;Fam13b;Fam13b;Fam13b;Fam13b;Fam13b,0;0;-3289;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,225358,ENSMUSG00000036501,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11702,cg05280803,0.0000131,0.00000319,4.095308919,0.0000539,gain,ns,-0.00000805,0.00000542,-1.48492101,0.138580883,neg,ns,0.001279465,0.001589117,0.805142114,0.42135477,pos,ns,0.375352085,-0.0000709,0.0000546,-1.297707791,0.19535255,neg,ns,0.018445859,Gas1,Gas1_Intergenic_downstream,13,60147415,60147464,60147463,60147464,50,+,GATTACACGATACAGCTGTCCCGGCACCGTGAAAATTAAGTTATGCCCCG,Distal Intergenic,13,60175787,60176941,1155,2,Gas1-202,29477,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,10,14451,ENSMUSG00000052957,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6844,cg09377682,0.0000797,0.0000158,5.050943251,0.000000752,gain,yes,-0.0000398,0.0000268,-1.484535561,0.138682983,neg,ns,0.021399622,0.007854668,2.724446514,0.006806476,pos,ns,2.167077713,-0.000586708,0.000270121,-2.172015812,0.030612198,neg,ns,0.246021424,Arhgap26,Arhgap26_Intron,18,38754919,38754968,38754919,38754920,50,+,CGTGAAGCCTACACCTGTCATGAGCTAATGTTTGATTCCTGCCAAAGTTT,"Intron (9630014M24Rik-201/9630014M24Rik-201, intron 3 of 3)",18,38676718,39110534,433817,1,Arhgap26-213,78201,Arhgap26-213,Arhgap26,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,6,71302,ENSMUSG00000036452,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4314,cg14073048,-0.00000402,0.00000455,-0.883832569,0.37747153,loss,ns,0.0000115,0.00000772,1.484363312,0.138728629,pos,ns,0.003381992,0.002263002,1.494471554,0.1360696,pos,ns,0.866238892,-0.000154592,0.0000778,-1.986419775,0.047866993,neg,ns,0.891333963,Gm6643,Gm6643_Intergenic_upstream,18,28324436,28324485,28324436,28324437,50,+,CGATGTCTATCATCAAAACACAGCAGGTAGAAACCATCAGCCAGGGCCAT,Distal Intergenic,18,28432889,28435355,2467,1,Gm6643-201,-108404,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,3,625997,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7893,cg00758337,-0.000000136,0.00000241,-0.056663065,0.9548501,loss,ns,-0.00000607,0.00000409,-1.484335675,0.138735954,neg,ns,0.001180257,0.001197207,0.985842561,0.324979185,pos,ns,0.488144454,-0.0000325,0.0000412,-0.789603869,0.430362673,neg,ns,0.950330573,Pax5,Pax5_Intron,4,44622657,44622706,44622657,44622658,50,+,CGGAAAATAGCATCTGTAATTGGAGATTATGAAGTATGGCCAGCTCCTGA,"Intron (Pax5-201/Pax5, intron 6 of 9)",4,44524757,44710487,185731,2,Pax5-201,87781,Pax5-201;Pax5-202;Pax5-203;Pax5-204;Pax5-205;Pax5-207;Pax5-206;Pax5-209;Pax5-210;Pax5-212;Pax5-213;Pax5-214;Pax5-215;Pax5-220;Pax5-211,Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,19,45,18507,ENSMUSG00000014030,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13165,cg16698248,-0.0000118,0.00000578,-2.043928801,0.041805397,loss,ns,0.0000146,0.00000981,1.484236769,0.13876217,pos,ns,-0.00034785,0.002874674,-0.121005091,0.903765396,neg,ns,0.043944291,0.0000446,0.0000989,0.450772851,0.652468394,pos,ns,0.071366299,Tcf4,Tcf4_fiveUTR,18,69593542,69593591,69593590,69593591,50,+,CATGGGCGGCAACTCTTTGATGTACTACTATAATGGGAAAGCGGTAAGCG,Promoter (<=1kb),18,69593583,69651247,57665,1,Tcf4-220,0,Tcf4-201;Tcf4-207;Tcf4-240;Tcf4-254;Tcf4-246;Tcf4-206;Tcf4-202;Tcf4-257;Tcf4-232;Tcf4-248;Tcf4-231;Tcf4-205;Tcf4-253;Tcf4-238;Tcf4-249;Tcf4-219;Tcf4-227;Tcf4-250;Tcf4-229;Tcf4-260;Tcf4-226;Tcf4-216;Tcf4-256;Tcf4-230;Tcf4-221;Tcf4-234;Tcf4-258;Tcf4-217;Tcf4-247;Tcf4-252;Tcf4-218;Tcf4-243;Tcf4-237;Tcf4-239;Tcf4-262;Tcf4-223;Tcf4-212;Tcf4-204;Tcf4-225;Tcf4-222;Tcf4-261;Tcf4-255;Tcf4-203;Tcf4-241;Tcf4-236;Tcf4-228;Tcf4-220;Tcf4-242,Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,12,66,21413,ENSMUSG00000053477,conserved gene but different region,18,69593509,69593604,96,*,96,8,0.5625,1.059310345,0.083333333,0.00000859,CpGisland,TRUE,U1,Pr-A
2194,cg25104938,-0.00000393,0.00000469,-0.838481095,0.402406612,loss,ns,0.0000118,0.00000797,1.484217089,0.138767387,pos,ns,0.005291346,0.002334776,2.266318674,0.02412092,pos,ns,1.617606136,-0.0000688,0.0000803,-0.856929017,0.392146065,neg,ns,0.921960459,Cyp7b1,Cyp7b1_Intron,3,18369915,18369964,18369963,18369964,50,-,TTTCAAACCAGCAATAACTTCTGGTGCTATTGGTCCTGAGGCAGCAGCCG,"Intron (Gm30667-201/Gm30667-201, intron 5 of 5)",3,18071950,18243338,171389,2,Cyp7b1-201,-126626,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,17,13123,ENSMUSG00000039519,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10299,cg23795168,-0.0000167,0.0000253,-0.659407373,0.510123756,loss,ns,-0.0000638,0.000043,-1.484199572,0.13877203,neg,ns,0.094644127,0.012598035,7.512610162,6.24E-13,pos,yes,12.20447454,-0.002169329,0.000433245,-5.007159648,0.000000929,neg,yes,0.515149257,Hibadh,Hibadh_Intron,6,52568805,52568854,52568805,52568806,50,+,CGATAGATCCTTAAATTGGAAGCAATAGCCGTTCTTCTATCCCAAGTTGG,"Intron (Hibadh-201/Hibadh, intron 4 of 7)",6,52546228,52640389,94162,2,Hibadh-201,71535,Hibadh-201;Hibadh-203,Hibadh;Hibadh,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,13,58875,ENSMUSG00000029776,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13072,cg13436384,-0.0000413,0.00000745,-5.537854264,6.54E-08,loss,yes,-0.0000188,0.0000127,-1.484181707,0.138776766,neg,ns,0.02168898,0.003707423,5.850149734,1.25E-08,pos,ns,7.904009355,-0.000457473,0.000127498,-3.588077046,0.000387012,neg,ns,0.897794036,Rora,Rora_threeUTR,9,69361763,69361812,69361811,69361812,50,-,AGCAATGCCACCTACTCCTGTCCTCGTCAGAAGAACTGTTTGATTGATCG,3' UTR,9,68653786,69388246,734461,1,Rora-201,707977,Rora-201;Rora-206;Rora-202,Rora;Rora;Rora,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,19,19883,ENSMUSG00000032238,mapped to different genes,9,69361787,69361984,198,*,198,11,0.585858586,0.654447115,0.055555556,0.00000422,CpGisland,TRUE,U11,Tr-P
849,cg14038897,-0.0000239,0.00000624,-3.833719174,0.000152866,loss,ns,0.0000157,0.0000106,1.484142746,0.138787095,pos,ns,0.000603471,0.003105469,0.194325267,0.846048484,pos,ns,0.072604748,-0.000276164,0.000106797,-2.585880048,0.010169077,neg,ns,0.888176761,Gm13217,Gm13217_Intergenic_downstream,2,9012558,9012607,9012558,9012559,50,+,CGACTCCTGCTGGCATGATCAAGAAAAACCTGATTTGGGATTTTAATTAA,Distal Intergenic,2,9041124,9042484,1361,2,Gm13217-201,29877,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,100417571,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6057,cg05409685,0.0000281,0.00000298,9.42939808,1.01E-18,gain,yes,-0.00000751,0.00000506,-1.483890716,0.138853925,neg,ns,0.000192131,0.001482731,0.129579015,0.896983542,pos,ns,0.047215526,0.0000322,0.000051,0.630734588,0.528678792,pos,ns,0.029643154,Psd2,Psd2_Intergenic_upstream,18,35920153,35920202,35920153,35920154,50,+,CGCCAAAGTTTCACAGCCATCTGCTCGAGTGGAACGGCTTCCAGCGCTGG,Distal Intergenic,18,35964830,36014712,49883,1,Psd2-201,-44628,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,24,29,74002,ENSMUSG00000024347,mapped to different genes,18,35919677,35920257,581,*,581,41,0.690189329,0.594514326,0.070567986,4.29E-25,CpGisland,TRUE,U3,Pr-B
14464,cg07644497,-0.00000137,0.00000264,-0.520645386,0.602985487,loss,ns,-0.00000665,0.00000448,-1.483773831,0.138884928,neg,ns,-0.002555053,0.001312322,-1.946970882,0.052441103,neg,ns,1.280328186,0.0000596,0.0000451,1.320462604,0.187654665,pos,ns,0.955002715,Zc3h3,Zc3h3_Intron,15,75795688,75795737,75795736,75795737,50,+,CCTGCTACTATTAATGTAGTTAATGCTGAGATTATATCTATTTTCTGGCG,"Intron (Zc3h3-201/Zc3h3, intron 4 of 11)",15,75754430,75841915,87486,2,Zc3h3-201,46178,Zc3h3-201;Zc3h3-203;Zc3h3-202,Zc3h3;Zc3h3;Zc3h3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,18,223642,ENSMUSG00000075600,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26006,cg12204620,-0.0000139,0.0000116,-1.201851789,0.230338263,loss,ns,0.0000292,0.0000197,1.483773572,0.138884996,pos,ns,0.015278571,0.005760384,2.652352793,0.008404684,pos,ns,2.075478618,-0.000671093,0.000198099,-3.387662528,0.000795876,neg,ns,0.749019691,Gm2574,Gm2574_Intergenic_downstream,3,142980109,142980158,142980157,142980158,50,+,GGATACCCTGCTTAAAGTGCCAATATGATGCCATTCTGAACTGTAAAACG,Distal Intergenic,3,142962611,142963612,1002,1,Gm2574-201,17498,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,19,100040053,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27669,cg18284528,-0.00001,0.00000201,-4.984326441,0.00000104,loss,yes,0.00000506,0.00000341,1.483656594,0.138916029,pos,ns,0.000356333,0.000998347,0.356922994,0.72139229,pos,ns,0.141828504,-0.0000264,0.0000343,-0.770209501,0.441762173,neg,ns,0.958011219,Sdccag8,Sdccag8_Intron,1,176946746,176946795,176946746,176946747,50,+,CGGTTCTTAATTCACTGTCGCAGCTGGATGTAATTCAGTGGCTCCAAATT,"Intron (Sdccag8-204/Sdccag8, intron 15 of 16)",1,176814660,176956360,141701,1,Sdccag8-204,132086,Sdccag8-204;Sdccag8-201;Sdccag8-203,Sdccag8;Sdccag8;Sdccag8,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,20,76816,ENSMUSG00000026504,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6615,cg26674451,0.000167007,0.0000107,15.67117622,3.60E-41,gain,yes,-0.0000269,0.0000181,-1.483576575,0.13893726,neg,ns,0.017455314,0.005304077,3.290924121,0.001113769,pos,ns,2.953204964,-0.0000853,0.000182407,-0.467831792,0.640233604,neg,ns,0.177961438,Msx1,Msx1_Promoter,5,37828898,37828947,37828946,37828947,50,+,TTCAAAGCAATTAGACCAATCAGGCGTAACGAACCACTTTGCTGCTGACG,Promoter (4-5kb),5,37820485,37824583,4099,2,Msx1-201,-4315,Msx1-201;Msx1-202,Msx1;Msx1,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,8,14,17701,ENSMUSG00000048450,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
5773,cg21773992,-0.0000043,0.00000178,-2.422141042,0.016002572,loss,ns,0.00000448,0.00000302,1.483564038,0.138940586,pos,ns,0.000564561,0.000883802,0.638787346,0.523432949,pos,ns,0.281138943,0.0000191,0.0000304,0.628771542,0.529961652,pos,ns,0.054617757,Wapl,Wapl_fiveUTR,14,34673970,34674019,34674018,34674019,50,-,GAGATGGTTCAGGGCCCTGTTCAAACTCCAGCACTGACCATTCACCGGCG,Promoter (<=1kb),14,34673928,34747983,74056,1,Wapl-201,42,Wapl-201;Wapl-205;Wapl-202,Wapl;Wapl;Wapl,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,6,218914,ENSMUSG00000041408,conserved gene and region,14,34673370,34674481,1112,*,1112,125,0.705035971,0.911840146,0.112410072,1.48E-101,CpGisland,TRUE,U1,Pr-A
11526,cg16627737,-0.0000117,0.000014,-0.833371835,0.405276685,loss,ns,0.0000353,0.0000238,1.483550673,0.138944133,pos,ns,0.000674217,0.006971562,0.09670966,0.92301946,pos,ns,0.034789143,0.0000184,0.000239751,0.076695229,0.938915474,pos,ns,0.765504301,Ntrk2,Ntrk2_Intron,13,58980449,58980498,58980449,58980450,50,-,CGAAGTTTATTTTATGTTTTGTTGTGGTTTTCAGATTTCTCATGGTTTGG,"Intron (Ntrk2-207/Ntrk2, intron 12 of 17)",13,58806569,59129965,323397,1,Ntrk2-207,173880,Ntrk2-207;Ntrk2-201;Ntrk2-203,Ntrk2;Ntrk2;Ntrk2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,4,18212,ENSMUSG00000055254,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27739,cg15028514,0.0000587,0.00000473,12.40659086,5.68E-29,gain,yes,-0.0000119,0.00000804,-1.483277247,0.139016701,neg,ns,-0.001836379,0.002356576,-0.779257568,0.436422476,neg,ns,0.360092891,0.000159387,0.000081,1.966709723,0.050108431,pos,ns,0.137239574,Ythdf1,Ythdf1_Exon,2,180894020,180894069,180894020,180894021,50,+,CGCCCCAGCCCTGAGGGCCCCTCTGCGTGTTCACAGCGGACCTTGATTTA,"Exon (Mir124a-3-201/Mir124a-3-201, exon 1 of 1)",2,180911768,180920387,8620,2,Ythdf1-203,26318,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,228994,ENSMUSG00000038848,mapped to different genes,2,180892700,180894599,1900,*,1900,214,0.697368421,0.934712644,0.112631579,1.61E-173,CpGisland,TRUE,U3,Pr-B
23208,cg27482461,-0.00000299,0.00000522,-0.572670649,0.56728282,loss,ns,0.0000132,0.00000887,1.483007462,0.139088331,pos,ns,0.000897725,0.002599766,0.345309775,0.730095687,pos,ns,0.136620217,-0.000075,0.0000894,-0.83867292,0.402299096,neg,ns,0.672818729,Rnf220,Rnf220_Exon,4,117489957,117490006,117489957,117489958,50,+,CGATTGGCAAAAGTGCCTGGCACCCCACCTTGCCGATGGTACATAGAGGC,"Exon (Rnf220-201/Rnf220, exon 2 of 15)",4,117271463,117497052,225590,2,Rnf220-201,7046,Rnf220-201;Rnf220-207;Rnf220-204,Rnf220;Rnf220;Rnf220,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,15,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
22853,cg18441295,-0.0000104,0.0000132,-0.786417746,0.432223528,loss,ns,-0.0000334,0.0000225,-1.482973954,0.13909723,neg,ns,-0.012575143,0.006592213,-1.907575251,0.057370036,neg,ns,1.241314874,-0.0000995,0.000226706,-0.438747498,0.661150128,neg,ns,0.258620601,Sox6,Sox6_Intron,7,116032680,116032729,116032728,116032729,50,+,ATTCTTTTAAGGTCGATTTACATGACCTCCGGCTACAACTAAGACAGCCG,"Intron (Sox6-204/Sox6, intron 1 of 15)",7,115471344,116038744,567401,2,Sox6-204,6015,Sox6-210;Sox6-202;Sox6-204;Sox6-209;Sox6-214;Sox6-208,Sox6;Sox6;Sox6;Sox6;Sox6;Sox6,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,37,57,20679,ENSMUSG00000051910,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8451,cg27461453,-0.0000359,0.00000935,-3.835681383,0.000151706,loss,ns,-0.0000236,0.0000159,-1.482789445,0.139146238,neg,ns,-0.010975934,0.004655056,-2.357852263,0.019001937,neg,ns,1.721202117,0.000116663,0.000160087,0.728745596,0.466707463,pos,ns,0.791742329,Gm12161,Gm12161_Intergenic_downstream,11,45154737,45154786,45154737,45154738,50,-,CGTGGTGCTTTGATTAATGATGCTGGTGGGACTCCCAGAAGACCAAAGAG,Distal Intergenic,11,45280594,45280954,361,2,Gm12161-201,126217,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,10,382510,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21493,cg14764181,-0.0000128,0.00000757,-1.689618255,0.092106379,loss,ns,0.0000191,0.0000129,1.482569864,0.139204578,pos,ns,-0.003135142,0.003767056,-0.832252697,0.405906986,neg,ns,0.391573474,0.000145882,0.000129549,1.126077641,0.261003647,pos,ns,0.836985678,Zfhx3,Zfhx3_Intron,8,107960798,107960847,107960846,107960847,50,-,TTGGAATCCAGACATCAAAGAATTCTTCCACCAGACCCAAATTTTGCCCG,"Intron (Zfhx3-204/Zfhx3, intron 1 of 15)",8,107942644,108961630,1018987,1,Zfhx3-204,18154,Zfhx3-204,Zfhx3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,114,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18690,cg08154652,0.0000866,0.0000148,5.848992212,1.26E-08,gain,yes,0.0000373,0.0000252,1.482525875,0.139216268,pos,ns,0.028792327,0.007373151,3.905023295,0.000115663,pos,ns,3.936806193,-0.000693425,0.000253562,-2.734733798,0.006602306,neg,ns,0.356861856,Skap1,Skap1_Intron,11,96742075,96742124,96742123,96742124,50,-,CCCTGACACACACAGAGCATAAACAGCAGTAAACAGATCATTAGTACCCG,"Intron (Skap1-204/Skap1, intron 11 of 12)",11,96464593,96758941,294349,1,Skap1-204,277482,Skap1-204;Skap1-203;Skap1-201,Skap1;Skap1;Skap1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,40,46,78473,ENSMUSG00000057058,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
21710,cg05664157,-0.0000039,0.00000204,-1.907247736,0.057412582,loss,ns,0.00000515,0.00000347,1.482520916,0.139217586,pos,ns,0.002547849,0.001016969,2.505335652,0.01274612,pos,ns,1.894622,-0.0000783,0.000035,-2.238663701,0.025887235,neg,ns,0.086309848,Prpf38b,Prpf38b_Exon,3,108910427,108910476,108910475,108910476,50,+,GCAGTGAGGAGGCGCCAGGTGAGCTCCCCAGCACAGCCAAGCCAGCACCG,"Exon (Prpf38b-207/Prpf38b, exon 1 of 2)",3,108902805,108911696,8892,2,Prpf38b-204,1220,Prpf38b-204;Prpf38b-201;Prpf38b-208;Prpf38b-202;Prpf38b-203;Prpf38b-206;Prpf38b-205;Prpf38b-207,Prpf38b;Prpf38b;Prpf38b;Prpf38b;Prpf38b;Prpf38b;Prpf38b;Prpf38b,0;0;0;-4842;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,13,66921,ENSMUSG00000027881,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
6276,cg25048251,-0.0000033,0.00000324,-1.019229603,0.308888738,loss,ns,0.00000816,0.00000551,1.482405186,0.139248344,pos,ns,0.001239393,0.001612903,0.768423709,0.442820478,pos,ns,0.353772304,0.000021,0.0000555,0.379220416,0.704783812,pos,ns,0.916854872,Tshz3,Tshz3_Intron,7,36710638,36710687,36710686,36710687,50,-,CAATCATCAAAGGCAGGTGAATAGCATTAGAAACACGCTATTGTCAGACG,"Intron (Tshz3-201/Tshz3, intron 1 of 1)",7,36698118,36773553,75436,1,Tshz3-201,12520,Tshz3-201,Tshz3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,58,243931,ENSMUSG00000021217,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10445,cg17591962,-0.00000481,0.00000411,-1.168721486,0.243413803,loss,ns,0.0000104,0.00000699,1.48226432,0.13928579,pos,ns,0.001322617,0.002047564,0.645946673,0.518791757,pos,ns,0.285006933,-0.000120141,0.0000704,-1.706165629,0.088978782,neg,ns,0.90793525,Npas3,Npas3_Intron,12,53566968,53567017,53567016,53567017,50,-,GCTGATTGCAGCCCTTCTGGGAGAATCCTGGGTGAGAGGGACACTGTGCG,"Intron (Npas3-204/Npas3, intron 2 of 10)",12,53248157,54069532,821376,1,Npas3-204,318811,Npas3-204;Npas3-201;Npas3-203,Npas3;Npas3;Npas3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,83,103,27386,ENSMUSG00000021010,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26220,cg26741382,-0.0000114,0.00000487,-2.336768817,0.020087856,loss,ns,0.0000123,0.00000827,1.482227322,0.139295626,pos,ns,0.000897016,0.002422398,0.37030096,0.711411135,pos,ns,0.147879341,0.0000148,0.0000833,0.177885471,0.858929103,pos,ns,0.05024639,Hs2st1,Hs2st1_fiveUTR,3,144569816,144569865,144569864,144569865,50,+,CAGCTGCAACTTGGGCGGCATCATAATCCTGAGGAGCCCCATGAAACCCG,Promoter (<=1kb),3,144429706,144570181,140476,2,Hs2st1-201,316,Hs2st1-201;Hs2st1-202;Hs2st1-203;Selenof-203;Selenof-201;Selenof-202;Selenof-206,Hs2st1;Hs2st1;Hs2st1;Selenof;Selenof;Selenof;Selenof,0;0;0;-439;-561;-828;-849,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,6,23908,ENSMUSG00000040151,conserved gene and region,3,144569789,144570495,707,*,707,84,0.710042433,0.959232459,0.118811881,9.67E-71,CpGisland,TRUE,U1,Pr-A
2496,cg08269102,0.000112683,0.0000167,6.735489235,7.94E-11,gain,yes,-0.0000421,0.0000284,-1.482179395,0.139308369,neg,ns,0.03391039,0.008326572,4.072551019,0.0000591,pos,ns,4.228413336,-0.000837568,0.00028635,-2.924977918,0.003698942,neg,ns,0.518704488,Spred2,Spred2_Exon,11,19998253,19998302,19998253,19998254,50,-,CGAAGCGGCTTTCTCATCCATGGTGAACGACAGAAAGACAAACTGGTAAT,"Exon (Spred2-202/Spred2, exon 2 of 7)",11,19924375,20024026,99652,1,Spred2-202,73878,Spred2-202;Spred2-201;Spred2-203,Spred2;Spred2;Spred2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,13,114716,ENSMUSG00000045671,conserved gene and region,11,19998072,19998386,315,*,315,19,0.523809524,0.886666667,0.06031746,9.62E-11,CpGisland,TRUE,NA,NRS
26570,cg07263478,0.0000921,0.0000126,7.318971315,2.16E-12,gain,yes,-0.0000317,0.0000214,-1.482085445,0.139333351,neg,ns,0.008096517,0.006265269,1.292285631,0.197220706,pos,ns,0.705047492,-0.0000834,0.000215462,-0.387156816,0.698905771,neg,ns,0.490210945,Casz1,Casz1_Intron,4,148922150,148922199,148922150,148922151,50,-,CGCCATAATTAAGCGAGGCTTTCGGCCCCAGAAAGTGCAGATTCAGGTTT,"Intron (Casz1-201/Casz1, intron 4 of 15)",4,148804429,148945129,140701,1,Casz1-201,117721,Casz1-201;Casz1-202;Casz1-206,Casz1;Casz1;Casz1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,94,124,69743,ENSMUSG00000028977,mapped to different genes,4,148922073,148922173,101,*,101,10,0.673267327,0.956439394,0.099009901,6.91E-08,CpGisland,TRUE,NA,NRS
18545,cg06760710,0.000051,0.00000841,6.065751458,3.82E-09,gain,yes,0.0000212,0.0000143,1.481958275,0.139367171,pos,ns,0.014454366,0.004184594,3.454186026,0.000628805,pos,ns,3.201483929,0.00000012,0.000143908,0.000835294,0.999334069,pos,ns,0.165110162,Hoxb8,Hoxb8_Exon,11,96282972,96283021,96283020,96283021,50,-,TATTTCGTCAACTCACTGTTCTCCAAATACAAAACCGGGGAGTCCCTGCG,"Exon (Hoxb8-201/Hoxb8, exon 1 of 2)",11,96281905,96285315,3411,1,Hoxb8-201,1067,Hoxb7-201;Hoxb8-201;Hoxb8-202;Hoxb8-203,Hoxb7;Hoxb8;Hoxb8;Hoxb8,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,26,15416,ENSMUSG00000056648,mapped to different genes,11,96282929,96283401,473,*,473,44,0.642706131,0.918325023,0.093023256,3.13E-32,CpGisland,TRUE,NA,NRS
6642,cg12649832,0.00000966,0.0000028,3.451301371,0.000635311,gain,ns,-0.00000705,0.00000476,-1.481832868,0.13940053,neg,ns,-0.001753995,0.001393486,-1.258710349,0.209082046,neg,ns,0.679683259,0.000116912,0.0000479,2.439639363,0.015262256,pos,ns,0.043444994,Msx1,Msx1_Intergenic_upstream,5,37901996,37902045,37901996,37901997,50,-,CGATTAAATCACCATGTGGACAGAGGCTTGCGAAGGAATCTGCTCTACAG,Distal Intergenic,5,37820485,37824583,4099,2,Msx1-201,-77462,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,14,17701,ENSMUSG00000048450,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
1770,cg15844104,0.00000416,0.00000181,2.297779526,0.022240036,gain,ns,-0.00000455,0.00000307,-1.481801872,0.139408776,neg,ns,-0.001268724,0.000900167,-1.409431916,0.159709863,neg,ns,0.796668262,0.0000312,0.000031,1.009293132,0.313621204,pos,ns,0.03298768,Kctd1,Kctd1_Promoter,18,15151200,15151249,15151200,15151201,50,-,CGAGTGTGCCGCGCTCTCGCCCCATGCCTGGCACATGCGTAAAAGCGAGT,Promoter (<=1kb),18,14968685,15151446,182762,2,Kctd1-201,197,Kctd1-201,Kctd1,0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,6,24,106931,ENSMUSG00000036225,mapped to different genes,18,15150796,15151253,458,*,458,65,0.744541485,1.024784854,0.141921397,1.05E-60,CpGisland,TRUE,U3,Pr-B
23010,cg03368965,-0.000017,0.0000103,-1.646567199,0.100660372,loss,ns,0.000026,0.0000176,1.481741388,0.139424867,pos,ns,0.006421853,0.005143258,1.248596197,0.212754917,pos,ns,0.672120394,-0.000385823,0.000176876,-2.181315905,0.029911137,neg,ns,0.674766952,Tmco5,Tmco5_Intergenic_upstream,2,116808705,116808754,116808705,116808706,50,-,CGGAGACACCATGCAGACAAAAGTCAGTGTCTCAAACCAAATTCTACCTG,Distal Intergenic,2,116878691,116892181,13491,1,Tmco5-202,-69986,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,14,67356,ENSMUSG00000027355,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12620,cg05581130,-0.0000211,0.0000108,-1.949297319,0.052161514,loss,ns,0.0000272,0.0000184,1.481737877,0.139425801,pos,ns,0.008989302,0.005378989,1.671188001,0.095693686,pos,ns,1.019116716,-0.000298583,0.000184983,-1.614110453,0.10752085,neg,ns,0.762792635,Ccnl1,Ccnl1_threeUTR,3,65946889,65946938,65946889,65946890,50,+,CGGGACCTGCTTCTTGATCTCGAGCTGTATGTTCCAGATCGACTCCGCCT,3' UTR,3,65946151,65958162,12012,2,Ccnl1-203,11224,Ccnl1-203;Ccnl1-214;Ccnl1-202;Ccnl1-201;Ccnl1-205;Ccnl1-206;Ccnl1-212;Ccnl1-207;Ccnl1-213;Ccnl1-211;Ccnl1-208;Ccnl1-204;Ccnl1-209;Ccnl1-210,Ccnl1;Ccnl1;Ccnl1;Ccnl1;Ccnl1;Ccnl1;Ccnl1;Ccnl1;Ccnl1;Ccnl1;Ccnl1;Ccnl1;Ccnl1;Ccnl1,0;0;0;0;0;0;0;0;0;0;0;4930;6055;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,7,7,56706,ENSMUSG00000027829,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23114,cg00236139,0.000073,0.0000169,4.321879732,0.0000209,gain,ns,-0.0000425,0.0000287,-1.481426629,0.139508631,neg,ns,0.024064809,0.008402648,2.863955546,0.004469255,pos,ns,2.349764827,-0.000901887,0.000288966,-3.121080306,0.001971579,neg,ns,0.366290361,Rnf220,Rnf220_Intron,4,117304394,117304443,117304442,117304443,50,-,GGGAATTTCACTTGCTGTGCAGATCCCGCTGTCCGGCTGTCAGACACCCG,"Intron (Rnf220-201/Rnf220, intron 3 of 14)",4,117271463,117497052,225590,2,Rnf220-201,192609,Rnf220-201;Rnf220-202;Rnf220-208;Rnf220-207,Rnf220;Rnf220;Rnf220;Rnf220,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,4,117304190,117304735,546,*,546,58,0.690476191,0.936645963,0.106227106,6.95E-46,CpGisland,TRUE,NA,NRS
4000,cg26970010,-0.00000391,0.00000274,-1.426152484,0.154830576,loss,ns,0.0000069,0.00000466,1.481401219,0.139515395,pos,ns,0.002149535,0.001365051,1.574692234,0.116347467,pos,ns,0.934243067,-0.0000864,0.0000469,-1.841299244,0.066533036,neg,ns,0.940266736,Gm50379,Gm50379_Intergenic_upstream,19,26354313,26354362,26354313,26354314,50,-,CGATAACACATGCAGTTCCCCACATGTTTATGCAGAGTCTCAGATTTATC,Distal Intergenic,19,26530752,26530929,178,1,Gm50379-201,-176439,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20137,cg15262576,-0.0000247,0.0000069,-3.583457728,0.000393644,loss,ns,0.0000174,0.0000117,1.481333747,0.139533356,pos,ns,-0.000569027,0.003434889,-0.16566109,0.868531652,neg,ns,0.06121435,-0.0000752,0.000118126,-0.636895428,0.524662993,neg,ns,0.749375891,Calcoco1,Calcoco1_Intergenic_downstream,15,102705908,102705957,102705908,102705909,50,+,CGGGAAGCAATAAAGGAAGAGAGGGATTCTATTAATTAAATCATTGTTAT,Downstream (<1kb),15,102706972,102709902,2931,2,Calcoco1-203,3945,Calcoco1-201;Calcoco1-203;Calcoco1-205;Calcoco1-204;Calcoco1-209;Calcoco1-207;Calcoco1-202,Calcoco1;Calcoco1;Calcoco1;Calcoco1;Calcoco1;Calcoco1;Calcoco1,0;0;0;0;4103;13759;9839,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,8,29,67488,ENSMUSG00000023055,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27082,cg14714835,-0.0000168,0.0000154,-1.08625861,0.278208525,loss,ns,0.0000389,0.0000262,1.481308566,0.13954006,pos,ns,-0.003998991,0.007687892,-0.520167405,0.603318168,neg,ns,0.219453596,0.000127564,0.000264386,0.482491804,0.629797133,pos,ns,0.481589632,Cnksr2,Cnksr2_Exon,X,157910212,157910261,157910212,157910213,50,-,CGTGGCAACGCTGCTTGTGGGACTTCTAGGTATAAGAGGCTGGTTAAAAT,"Exon (Cnksr2-201/Cnksr2, exon 10 of 22)",20,157821436,158043294,221859,2,Cnksr2-201,133033,Cnksr2-201;Cnksr2-202,Cnksr2;Cnksr2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,11,245684,ENSMUSG00000025658,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7507,cg22024422,0.0000832,0.00000632,13.16611775,9.49E-32,gain,yes,-0.0000159,0.0000107,-1.481263251,0.139552125,neg,ns,0.004242183,0.003144062,1.349268309,0.17823542,pos,ns,0.749005987,-0.0000779,0.000108124,-0.720548218,0.471730499,neg,ns,0.11249536,Ppp2r2b,Ppp2r2b_fiveUTR,18,42899510,42899559,42899558,42899559,50,+,GGAGGCTGGAGGCGGCTGGTGCATTAAAGGCGAGGCTCCTCCCAACCGCG,5' UTR,18,42645269,43059471,414203,2,Ppp2r2b-201,159912,Ppp2r2b-204;Ppp2r2b-202;Ppp2r2b-201;Ppp2r2b-203;Ppp2r2b-208;Ppp2r2b-207;Ppp2r2b-205;Ppp2r2b-206,Ppp2r2b;Ppp2r2b;Ppp2r2b;Ppp2r2b;Ppp2r2b;Ppp2r2b;Ppp2r2b;Ppp2r2b,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,9,15,72930,ENSMUSG00000024500,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25653,cg15161323,0.000000783,0.00000153,0.512238723,0.608848689,gain,ns,0.00000384,0.0000026,1.481260629,0.139552823,pos,ns,0.001878978,0.000760357,2.471177311,0.014004173,pos,ns,1.853742545,-0.0000756,0.0000261,-2.892666129,0.00409026,neg,ns,0.960055175,Slc15a5,Slc15a5_Intron,6,138002386,138002435,138002386,138002387,50,+,CGATAATGCCATTAGCTATGAACTGTAATTGTAATAGCATTAGTCAAATG,"Intron (Slc15a5-202/Slc15a5, intron 4 of 5)",6,137983586,138043411,59826,2,Slc15a5-202,40976,Slc15a5-202;Slc15a5-201;Slc15a5-206,Slc15a5;Slc15a5;Slc15a5,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,2,277898,ENSMUSG00000044378,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
916,cg26931581,0.0000293,0.00000373,7.84286853,7.17E-14,gain,yes,0.00000939,0.00000634,1.481176753,0.139575156,pos,ns,0.003226834,0.001857287,1.737391557,0.083311252,pos,ns,1.079296338,0.0000948,0.0000639,1.484231357,0.138763604,pos,ns,0.050503045,Gdf6,Gdf6_Intron,4,9847251,9847300,9847299,9847300,50,+,CCGGGGCTTGCTTAGCATCGGGCCCCTGATTGGAGTGTTTCAACTCAGCG,"Intron (Gdf6-201/Gdf6, intron 1 of 1)",4,9844372,9862345,17974,1,Gdf6-201,2879,Gdf6-201,Gdf6,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,11,242316,ENSMUSG00000051279,conserved gene and region,4,9847226,9847435,210,*,210,17,0.580952381,0.959419511,0.080952381,1.02E-11,CpGisland,TRUE,NA,NRS
12203,cg14397495,-0.00000966,0.00000285,-3.383940885,0.000806349,loss,ns,-0.00000718,0.00000485,-1.480972548,0.13962954,neg,ns,0.002794474,0.001420175,1.967697075,0.049994082,pos,ns,1.301081403,-0.0000645,0.0000488,-1.321471903,0.187318509,neg,ns,0.961199347,Map2k5,Map2k5_Intron,9,63345267,63345316,63345315,63345316,50,+,CCTTTTGGGACAGCAATAACTGTTAACAAGTAGTCTGGAAAAATTGTCCG,"Intron (Map2k5-201/Map2k5, intron 3 of 21)",9,63163768,63377902,214135,2,Map2k5-201,32586,Map2k5-201;Map2k5-203,Map2k5;Map2k5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,34,37,23938,ENSMUSG00000058444,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13720,cg04463889,-0.00000144,0.00000238,-0.604642033,0.545859164,loss,ns,-0.00000598,0.00000404,-1.480936253,0.139639208,neg,ns,0.003428102,0.001182316,2.899480627,0.00400472,pos,ns,2.397427834,-0.0000883,0.0000407,-2.171816448,0.03062738,neg,ns,0.952386264,Rapgef4,Rapgef4_Exon,2,72242758,72242807,72242758,72242759,50,+,CGTTCATTGACAATCTAGTAAACTTTGAAAAAATGGTATGTGCAGTATTA,"Exon (Rapgef4-202/Rapgef4, exon 29 of 31)",2,71981240,72257474,276235,1,Rapgef4-202,261518,Rapgef4-202;Rapgef4-203;Rapgef4-201;Rapgef4-210;Rapgef4-206,Rapgef4;Rapgef4;Rapgef4;Rapgef4;Rapgef4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,11,56508,ENSMUSG00000049044,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13082,cg04135292,0.0000148,0.00000588,2.523707501,0.012111927,gain,ns,-0.0000148,0.00000999,-1.480884612,0.139652965,neg,ns,-0.003591167,0.002926858,-1.226969732,0.220764983,neg,ns,0.656069813,-0.0000606,0.000100654,-0.602251563,0.547446946,neg,ns,0.048627469,Arf6,Arf6_Exon,12,69373121,69373170,69373121,69373122,50,+,CGGGAGATGAGGGACGCCATAATCCTCATCTTCGCCAACAAGCAGGACCT,Promoter (<=1kb),12,69372150,69373783,1634,1,Arf6-201,971,Arf6-201;Gm18113-201,Arf6;Gm18113,0;-3098,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,8,11845,ENSMUSG00000044147,conserved gene and region,12,69371680,69373175,1496,*,1496,186,0.703877005,1.010385046,0.124331551,4.87E-160,CpGisland,TRUE,NA,NRS
14484,cg19002453,-0.000022,0.0000141,-1.555964853,0.120736738,loss,ns,0.0000355,0.000024,1.480796776,0.139676365,pos,ns,0.011656117,0.007032762,1.65740248,0.098449737,pos,ns,1.006785441,-0.000473527,0.000241856,-1.957888035,0.05113992,neg,ns,0.739065304,Ptprd,Ptprd_threeUTR,4,75941361,75941410,75941361,75941362,50,+,CGCCTTTCATTCTGTAAAACATTTACGCGTACTACTAATTAGAGGTAATT,3' UTR,4,75941238,76449980,508743,2,Ptprd-206,508570,Ptprd-206;Ptprd-204;Ptprd-213;Ptprd-220;Ptprd-203;Ptprd-217;Ptprd-218;Ptprd-219;Ptprd-201,Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,8,32,19266,ENSMUSG00000028399,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7097,cg09680988,-0.0000123,0.0000134,-0.921584362,0.357462069,loss,ns,0.0000336,0.0000227,1.480665349,0.139711385,pos,ns,-0.001643489,0.006652189,-0.247059919,0.805025388,neg,ns,0.094190423,-0.0000742,0.000228768,-0.324130515,0.74605781,neg,ns,0.655958113,Gm5973,Gm5973_Intergenic_upstream,1,40954947,40954996,40954995,40954996,50,-,ATTTGCCACTGTTCCACATGATTAAGCCAGATAATTGTGTGTTGATAGCG,Distal Intergenic,1,40863737,40864232,496,2,Gm5973-201,-90764,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,18,18,546733,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16839,cg02941848,0.0000116,0.00000893,1.2957849,0.196013567,gain,ns,0.0000225,0.0000152,1.480573412,0.139735886,pos,ns,0.005634797,0.004442517,1.268379481,0.205614142,pos,ns,0.686947018,-0.0000383,0.000152778,-0.25088992,0.802065429,neg,ns,0.816775073,Lrba,Lrba_Exon,3,86745802,86745851,86745850,86745851,50,+,TCATCAAGGTGCTGTACAAGACCAGCCATACCAGCTGCCAGTGGAAATCG,"Exon (Lrba-202/Lrba, exon 51 of 51)",3,86224680,86746712,522033,1,Lrba-202,521122,Lrba-202;Lrba-204;Lrba-201;Lrba-206,Lrba;Lrba;Lrba;Lrba,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,17,45,80877,ENSMUSG00000028080,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15472,cg06954658,0.000018,0.00000509,3.537534083,0.000465644,gain,ns,0.0000128,0.00000864,1.480333723,0.139799779,pos,ns,0.004406913,0.002532556,1.740104712,0.082833009,pos,ns,1.081796561,-0.0000437,0.0000871,-0.502155815,0.615914407,neg,ns,0.036622606,Sall3,Sall3_fiveUTR,18,80986683,80986732,80986731,80986732,50,-,GGCTGAGCAATTAGGCTGGTGAATAATGCATGGCCATTAGCGGAGGGCCG,Promoter (<=1kb),18,80966376,80986771,20396,2,Sall3-201,39,Sall3-201;Sall3-203,Sall3;Sall3,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,10,20689,ENSMUSG00000024565,conserved gene but different region,18,80986723,80987780,1058,*,1058,149,0.748582231,1.019017453,0.140831758,7.28E-138,CpGisland,TRUE,U3,Pr-B
21643,cg22959737,0.0000894,0.0000135,6.617746257,1.60E-10,gain,yes,-0.000034,0.0000229,-1.48012515,0.139855396,neg,ns,0.042920239,0.006722199,6.384851095,6.26E-10,pos,ns,9.2034535,-0.00171134,0.000231176,-7.402764529,1.27E-12,neg,yes,0.598001522,Zfhx3,Zfhx3_Intron,8,108729351,108729400,108729351,108729352,50,+,CGCAGCTGTCTGACCCCGGGTGAAAAGTTCAAATCTGCATTTAAAAGGAG,"Intron (Zfhx3-204/Zfhx3, intron 7 of 15)",8,107942644,108961630,1018987,1,Zfhx3-204,786707,Zfhx3-204;Zfhx3-202;Zfhx3-201,Zfhx3;Zfhx3;Zfhx3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,114,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4098,cg12762301,-0.0000138,0.00000518,-2.672100588,0.007936356,loss,ns,0.000013,0.00000881,1.480097983,0.139862641,pos,ns,0.004955949,0.002579712,1.921125437,0.055632751,pos,ns,1.254669467,-0.0000934,0.0000887,-1.052839887,0.293234326,neg,ns,0.59259251,Crebrf,Crebrf_threeUTR,17,26772297,26772346,26772297,26772298,50,-,CGATTGTTTTATTTTTTGTACCAAAGACAAATGCAACTGATATGGCAAAC,3' UTR,17,26715650,26776635,60986,1,Crebrf-201,56647,Crebrf-201,Crebrf,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,5,77128,ENSMUSG00000048249,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10541,cg04110571,-0.000063,0.0000155,-4.050830871,0.0000646,loss,ns,0.0000391,0.0000264,1.480024729,0.139882179,pos,ns,0.011046356,0.007737632,1.427614448,0.154409424,pos,ns,0.811326198,-0.000162729,0.000266097,-0.611541682,0.541289235,neg,ns,0.794849006,Chn2,Chn2_Intron,6,54119929,54119978,54119977,54119978,50,+,ATTTCCTCTTTTCACATAGCATCTGTCCCTGACAGCTTGTGTGAGGCTCG,"Intron (Chn2-201/Chn2, intron 1 of 12)",6,54039573,54300721,261149,1,Chn2-201,80356,Chn2-201;Chn2-207;Chn2-205;Chn2-206;Chn2-213,Chn2;Chn2;Chn2;Chn2;Chn2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,2,69993,ENSMUSG00000004633,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20560,cg26787915,-0.000000791,0.0000053,-0.149307889,0.881407777,loss,ns,-0.0000133,0.000009,-1.479968371,0.139897212,neg,ns,-0.00625187,0.002637761,-2.370142568,0.018393004,neg,ns,1.735347334,-0.0000678,0.0000907,-0.747493271,0.455332482,neg,ns,0.89338247,Nckap1l,Nckap1l_threeUTR,15,103497896,103497945,103497896,103497897,50,+,CGGGCAGAGATGATCAATCATCATATTAAATCATAATGAGCTTATAATCC,3' UTR,15,103453794,103498801,45008,1,Nckap1l-203,44102,Nckap1l-203;Nckap1l-202;Nckap1l-201;Nckap1l-204;Nckap1l-205,Nckap1l;Nckap1l;Nckap1l;Nckap1l;Nckap1l,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,2,105855,ENSMUSG00000022488,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8458,cg20131846,0.0000862,0.0000154,5.600901687,4.71E-08,gain,yes,0.0000387,0.0000261,1.479923564,0.139909165,pos,ns,0.019042853,0.007656441,2.487167818,0.013402141,pos,ns,1.872825815,-0.000300417,0.000263304,-1.14094806,0.254772174,neg,ns,0.283752392,Zeb2,Zeb2_Intergenic_upstream,2,45171998,45172047,45172046,45172047,50,+,TTTCCTGTTAGGATCCTGACACGTGGAGCATTGATGAACTCAGCACAACG,Distal Intergenic,2,45116441,45117395,955,2,Zeb2-230,-54603,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,9,158,24136,ENSMUSG00000026872,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13905,cg16105958,0.00000806,0.00000478,1.684957589,0.093003125,gain,ns,0.000012,0.00000812,1.479912845,0.139912025,pos,ns,-0.001169767,0.002380245,-0.491448323,0.623457161,neg,ns,0.205193382,0.000110697,0.0000819,1.352335677,0.177253623,pos,ns,0.071289962,Sp9,Sp9_Intron,2,73279980,73280029,73280028,73280029,50,-,AGTAATTATGTACATCCAAATTACATGCTAATTAAATTAGAATCAAATCG,"Intron (Sp9-202/Sp9, intron 1 of 2)",2,73271966,73284706,12741,1,Sp9-202,8014,Cir1-201;Cir1-202;Sp9-201;Sp9-202,Cir1;Cir1;Sp9;Sp9,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,21,381373,ENSMUSG00000068859,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
13555,cg18139355,-0.0000184,0.00000379,-4.854025446,0.00000192,loss,ns,0.00000953,0.00000644,1.479827053,0.139934914,pos,ns,-0.000421405,0.001887019,-0.223317847,0.823435222,neg,ns,0.08437056,-0.0000647,0.0000649,-0.997137948,0.319475242,neg,ns,0.924782379,Gm47811,Gm47811_Intergenic_downstream,13,71301709,71301758,71301757,71301758,50,-,GACAGAAAAGCAATCATAGCTTTTTCATTACTTACTGTTTTCCCCCTGCG,Distal Intergenic,13,71624610,71624974,365,2,Gm47811-201,323265,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9125,cg04478143,-0.0000148,0.00000301,-4.919590864,0.00000141,loss,yes,0.00000757,0.00000512,1.479804473,0.139940938,pos,ns,-0.00186106,0.001499044,-1.241497839,0.21536044,neg,ns,0.666834071,0.000087,0.0000516,1.687885283,0.092438997,pos,ns,0.938693937,Samd4,Samd4_Exon,14,47052944,47052993,47052992,47052993,50,+,GATGTCTCATGAGGACTTACGAGCTAGAGGACCCCAGTGCCTCCCATCCG,"Exon (Samd4-201/Samd4, exon 4 of 13)",14,46882854,47103150,220297,1,Samd4-201,170090,Samd4-201;Samd4-211;Samd4-202;Samd4-206;Samd4-203,Samd4;Samd4;Samd4;Samd4;Samd4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,16,74480,ENSMUSG00000021838,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2175,cg00281024,-0.00000165,0.0000035,-0.469967883,0.638708397,loss,ns,0.0000088,0.00000595,1.479571278,0.14000317,pos,ns,0.005459505,0.001743424,3.13148391,0.001905129,pos,ns,2.720075708,-0.000190843,0.00006,-3.183039057,0.001605293,neg,ns,0.934265972,Kdm6a,Kdm6a_Exon,X,18222779,18222828,18222827,18222828,50,+,GTGCTTTATGTTGATCCCAGCTTTTGTCGAGCCAAGGAAATTCATTTACG,"Exon (Kdm6a-201/Kdm6a, exon 6 of 29)",20,18162575,18279936,117362,1,Kdm6a-201,60204,Kdm6a-201;Kdm6a-202;Kdm6a-209;Kdm6a-205;Kdm6a-203,Kdm6a;Kdm6a;Kdm6a;Kdm6a;Kdm6a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,14,22289,ENSMUSG00000037369,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15789,cg10605443,0.00000216,0.00000383,0.565434726,0.572187111,gain,ns,0.00000961,0.0000065,1.479428907,0.140041175,pos,ns,0.004449574,0.001903861,2.337131877,0.020068705,pos,ns,1.697480649,-0.000133307,0.0000655,-2.036046393,0.042595529,neg,ns,0.907959932,Mef2c,Mef2c_Intergenic_upstream,13,83461653,83461702,83461653,83461654,50,-,CGACAGCACGTACCCATGTGGCTAACCTACAACTGCTAGAAGAAACAAAT,Distal Intergenic,13,83504034,83663343,159310,1,Mef2c-218,-42381,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,41,17260,ENSMUSG00000005583,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25093,cg14219291,-0.000000952,0.000000832,-1.144028341,0.253494485,loss,ns,0.00000209,0.00000141,1.47941892,0.140043841,pos,ns,0.00054162,0.000413965,1.308372586,0.191716194,pos,ns,0.717341201,-0.0000025,0.0000142,-0.175534078,0.860774597,neg,ns,0.020162585,Abraxas2,Abraxas2_Exon,7,132859264,132859313,132859312,132859313,50,+,GGCGGCGTCCATTTCGGGCTACACCTTCAGTGCTGTGTGTTTCCACAGCG,Promoter (<=1kb),7,132859307,132878614,19308,1,Abraxas2-204,0,Abraxas2-201;Abraxas2-208;Abraxas2-207;Abraxas2-202;Abraxas2-206;Abraxas2-203;Abraxas2-204;Fgfr2-217,Abraxas2;Abraxas2;Abraxas2;Abraxas2;Abraxas2;Abraxas2;Abraxas2;Fgfr2,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,109359,ENSMUSG00000030965,conserved gene and region,7,132859158,132859533,376,*,376,35,0.686170213,0.793153327,0.093085106,9.21E-26,CpGisland,TRUE,U1,Pr-A
17197,cg17235569,-0.00000682,0.00000532,-1.282276345,0.200703772,loss,ns,-0.0000134,0.00000904,-1.479403124,0.140048058,neg,ns,-0.002401782,0.002647911,-0.907047699,0.36508609,neg,ns,0.437604714,0.0000127,0.0000911,0.139435113,0.88919687,pos,ns,0.888246114,Clk2,Clk2_Exon,3,89169650,89169699,89169650,89169651,50,+,CGACGCTGAGGGCCACCTCATCTACCACGTCGGGGACTGGCTACAAGAGC,"Exon (Clk2-202/Clk2, exon 4 of 13)",3,89164795,89176921,12127,1,Clk2-202,4855,Clk2-202;Clk2-210;Clk2-201;Clk2-209;Clk2-207;Clk2-203;Clk2-204;Clk2-206;Clk2-211;Clk2-205,Clk2;Clk2;Clk2;Clk2;Clk2;Clk2;Clk2;Clk2;Clk2;Clk2,0;4833;0;0;0;0;0;0;0;-4256,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,10,12748,ENSMUSG00000068917,conserved gene and region,3,89169381,89169717,337,*,337,23,0.637982196,0.717685185,0.068249258,4.95E-14,CpGisland,TRUE,U10,Tr-S
15776,cg24833372,-0.00000835,0.00000704,-1.185814733,0.236603583,loss,ns,0.0000177,0.000012,1.47923646,0.140092559,pos,ns,0.01240309,0.00350628,3.537393033,0.000465883,pos,ns,3.331722971,-0.000403684,0.000120581,-3.34783234,0.000914846,neg,ns,0.881216334,Tet3,Tet3_threeUTR,6,83362796,83362845,83362796,83362797,50,+,CGGAATATTCAAGTATGGTTGTTAAGTTCACCTCCATTGGAAGCCAAGTA,3' UTR,6,83362373,83441675,79303,2,Tet3-202,78830,Bola3-203;Bola3-202;Bola3-207;Bola3-201;Bola3-206;Bola3-208;Tet3-202,Bola3;Bola3;Bola3;Bola3;Bola3;Bola3;Tet3,13649;13580;13350;11756;10701;9483;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,8,194388,ENSMUSG00000034832,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26215,cg21886546,-0.00000248,0.00000139,-1.786984909,0.074916886,loss,ns,-0.00000348,0.00000235,-1.479213195,0.140098772,neg,ns,0.000529778,0.000689358,0.768508912,0.442769952,pos,ns,0.35382186,-0.0000359,0.0000237,-1.515379876,0.130695191,neg,ns,0.970851258,Ppfia1,Ppfia1_Exon,7,144517628,144517677,144517676,144517677,50,+,ATTTCATTTTCAAGTTTATCATTGAGGTCATGCACAGATGTGGCTTCACG,"Exon (Ppfia1-201/Ppfia1, exon 8 of 31)",7,144476758,144553729,76972,2,Ppfia1-201,36052,Ppfia1-201;Ppfia1-204;Ppfia1-202;Ppfia1-203;Ppfia1-207,Ppfia1;Ppfia1;Ppfia1;Ppfia1;Ppfia1,0;-4354;0;34685;6693,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,233977,ENSMUSG00000037519,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15594,cg17487987,0.0000808,0.00000926,8.728687439,1.62E-16,gain,yes,-0.0000233,0.0000157,-1.479206902,0.140100453,neg,ns,0.013949367,0.00460673,3.02804101,0.002668191,pos,ns,2.573783147,-0.000407123,0.000158425,-2.569813113,0.010642429,neg,ns,0.047609194,Zfp804a,Zfp804a_Exon,2,82053822,82053871,82053822,82053823,50,-,CGCATCTCAGCAACGGACACTTTCGCAACATCAAGGGAGTTTTCCGGGGC,Promoter (<=1kb),2,82053222,82259879,206658,1,Zfp804a-201,600,Zfp804a-201,Zfp804a,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,9,241514,ENSMUSG00000070866,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
11828,cg25653550,-0.00000666,0.00000313,-2.126353863,0.034263632,loss,ns,-0.00000788,0.00000532,-1.479062193,0.140139102,neg,ns,-0.002816598,0.001560016,-1.805492991,0.071967596,neg,ns,1.142863006,0.0000857,0.0000536,1.596991857,0.111286341,pos,ns,0.93186915,Grk5,Grk5_Exon,19,60987716,60987765,60987716,60987717,50,+,CGCAAAGGGAAAAGCAAGAAGTGGAAAGAAATCCTGAAGTTCCCTCACAT,"Exon (Grk5-201/Grk5, exon 2 of 16)",19,60889749,61095968,206220,1,Grk5-201,97967,Grk5-201;Grk5-202;Grk5-203,Grk5;Grk5;Grk5,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,14773,ENSMUSG00000003228,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10647,cg22391226,-0.00000273,0.00000211,-1.292750505,0.197060024,loss,ns,-0.00000531,0.00000359,-1.479034024,0.140146627,neg,ns,-0.002156946,0.001052332,-2.04968306,0.041236494,neg,ns,1.384718268,0.0000176,0.0000362,0.487648058,0.626143834,pos,ns,0.941576504,Smad9,Smad9_Exon,3,54794344,54794393,54794344,54794345,50,+,CGTCTGCAAGATCCCCAGCGGCTGCAGCCTCAAGGTCTTCAACAACCAGC,"Exon (Smad9-201/Smad9, exon 5 of 6)",3,54755582,54801257,45676,1,Smad9-201,38762,Smad9-201,Smad9,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,55994,ENSMUSG00000027796,mapped to different genes,3,54794248,54794472,225,*,225,17,0.608888889,0.816261204,0.075555556,3.17E-11,CpGisland,TRUE,NA,NRS
4532,cg01691914,0.00000579,0.0000106,0.54632413,0.585236124,gain,ns,0.0000266,0.000018,1.478738687,0.140225535,pos,ns,0.003514931,0.005278214,0.66593189,0.505949859,pos,ns,0.295892521,0.0000341,0.000181517,0.187717536,0.851220892,pos,ns,0.85211052,Mnx1,Mnx1_Promoter,5,29487709,29487758,29487757,29487758,50,+,CTCTATTAAATTAGAAAATGATTCTCTTCTCGTTTAATTGTATTCTTTCG,Promoter (9-10kb),5,29473261,29478470,5210,2,Mnx1-201,-9239,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,6,8,15285,ENSMUSG00000001566,mapped to different genes,5,29487637,29487864,228,*,228,12,0.346491228,1.753846154,0.052631579,0.00000229,CpGisland,TRUE,U13,Hc-P
24382,cg21520769,0.000000786,0.00000203,0.387210103,0.698866365,gain,ns,0.0000051,0.00000345,1.478687976,0.140239088,pos,ns,-0.001445821,0.001010411,-1.430923731,0.153459339,neg,ns,0.814006677,0.000100248,0.0000347,2.88500451,0.004188421,pos,ns,0.961866645,Myef2,Myef2_Exon,2,125097979,125098028,125098027,125098028,50,+,AGTCTACCAAAGGAATCTCCAAAGCCTTGATTTATTCCAATATCACCACG,"Exon (Myef2-203/Myef2, exon 12 of 19)",2,125086271,125123595,37325,2,Myef2-203,25567,Myef2-203;Myef2-209;Myef2-206;Myef2-201;Myef2-207;Myef2-202;Myef2-205;Myef2-208,Myef2;Myef2;Myef2;Myef2;Myef2;Myef2;Myef2;Myef2,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,17876,ENSMUSG00000027201,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8138,cg15529327,0.00000551,0.0000115,0.47784877,0.633094615,gain,ns,0.000029,0.0000196,1.478683434,0.140240302,pos,ns,-0.000213458,0.005743204,-0.03716706,0.970375725,neg,ns,0.013060076,0.000034,0.000197508,0.171976417,0.863568282,pos,ns,0.403104653,Pax2,Pax2_Exon,19,44790714,44790763,44790714,44790715,50,+,CGCCTCCAATGACCCAGTGGGATCCTACTCCATCAATGGGATCCTGGGGA,"Exon (Pax2-203/Pax2, exon 5 of 10)",19,44756045,44837851,81807,1,Pax2-203,34669,Pax2-203;Pax2-201;Pax2-202,Pax2;Pax2;Pax2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,16,166,18504,ENSMUSG00000004231,conserved gene and region,19,44790692,44790817,126,*,126,9,0.611111111,0.765182186,0.071428571,0.00000623,CpGisland,TRUE,NA,NRS
3820,cg14111381,-0.0000126,0.00000371,-3.387111274,0.000797419,loss,ns,0.00000932,0.0000063,1.478646621,0.140250141,pos,ns,-0.001045304,0.001846079,-0.566229255,0.571647616,neg,ns,0.242871604,0.0000403,0.0000635,0.635097337,0.525833413,pos,ns,0.940549586,Celf4,Celf4_Intron,18,25527510,25527559,25527510,25527511,50,-,CGATCCAAATTAAAACATGCATGATAAATGCCAGGAAAACAGAGGAAGAC,"Intron (Celf4-202/Celf4, intron 3 of 12)",18,25477632,25753983,276352,2,Celf4-202,226424,Celf4-202;Celf4-201;Celf4-203;Celf4-207;Celf4-206;Celf4-209,Celf4;Celf4;Celf4;Celf4;Celf4;Celf4,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,59,108013,ENSMUSG00000024268,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3829,cg17740131,0.00000236,0.0000037,0.638643493,0.523526424,gain,ns,-0.00000929,0.00000628,-1.478609016,0.140260192,neg,ns,-0.004932787,0.001840198,-2.680573749,0.007742713,neg,ns,2.111106856,0.000106104,0.0000633,1.676629701,0.094622994,pos,ns,0.88461754,Adgrb3,Adgrb3_Exon,1,25553690,25553739,25553738,25553739,50,-,TGTTATTGCAAACCCTTGATTCTCTTAATGGGCCGCTGCAGTGTGTCCCG,"Exon (Adgrb3-206/Adgrb3, exon 3 of 29)",1,25067550,25826139,758590,2,Adgrb3-206,272400,Adgrb3-206;Adgrb3-205;Adgrb3-207;Adgrb3-201;Adgrb3-210,Adgrb3;Adgrb3;Adgrb3;Adgrb3;Adgrb3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,14,25,210933,ENSMUSG00000033569,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19488,cg15650356,0.0000885,0.00000766,11.5521766,6.50E-26,gain,yes,-0.0000193,0.000013,-1.478510978,0.140286399,neg,ns,0.00946973,0.00381442,2.482613698,0.013571215,pos,ns,1.867381265,-0.000278923,0.000131178,-2.126300394,0.034268118,neg,ns,0.114634094,Cdh8,Cdh8_fiveUTR,8,99416410,99416459,99416410,99416411,50,-,CGAGCCCGCCTGCCTGCCAAATGTAACTGTGAAGTGATGTGGAAAAGTGA,Promoter (<=1kb),8,99024471,99416427,391957,2,Cdh8-207,0,Cdh8-207;Cdh8-204;Cdh8-201;Cdh8-206;Cdh8-203;Cdh8-205,Cdh8;Cdh8;Cdh8;Cdh8;Cdh8;Cdh8,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,16,12564,ENSMUSG00000036510,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
18583,cg06384413,0.0000327,0.00000352,9.277514045,3.08E-18,gain,yes,-0.00000884,0.00000598,-1.478396945,0.140316886,neg,ns,0.002322834,0.001751776,1.325988182,0.185819792,pos,ns,0.73090803,-0.0000893,0.0000602,-1.48216281,0.139312779,neg,ns,0.071579816,Hoxb5,Hoxb5_Exon,11,96303395,96303444,96303443,96303444,50,+,TACCTCTTGAGGTCATCAGCGAGAATTTACGACTGGTCAACAAAAGCACG,Promoter (<=1kb),11,96303336,96306121,2786,1,Hoxb5-202,59,Hoxb5-202;Hoxb5-201;Hoxb6-202;Hoxb6-201,Hoxb5;Hoxb5;Hoxb6;Hoxb6,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,22,34,15413,ENSMUSG00000038700,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
5934,cg26662343,-0.0000144,0.0000132,-1.091015882,0.276113149,loss,ns,0.0000331,0.0000224,1.478307972,0.140340676,pos,ns,-0.003403542,0.006562651,-0.518623002,0.604393659,neg,ns,0.2186801,0.0000202,0.000225689,0.089463313,0.92877148,pos,ns,0.627856551,Gm7733,Gm7733_Intergenic_downstream,3,35362430,35362479,35362430,35362431,50,-,CGTTTTAGCATGACAATAAATGGAGTTATATTTAGCTGATTTGGGAAACT,Distal Intergenic,3,35536882,35537800,919,2,Gm7733-201,175370,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,14,15,665655,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7217,cg23625681,0.0000719,0.0000088,8.170170573,7.91E-15,gain,yes,-0.0000221,0.000015,-1.478176755,0.140375768,neg,ns,-0.006597411,0.004380228,-1.506179929,0.133039262,neg,ns,0.876020172,0.000340353,0.000150636,2.259442048,0.024550026,pos,ns,0.659650175,Cntfr,Cntfr_Exon,4,41663600,41663649,41663648,41663649,50,+,TAGAAGCCCTTGGGGTAAGTGTTGGAGCGGCAGCTGAGCACAGGCTCCCG,"Exon (Cntfr-203/Cntfr, exon 5 of 10)",4,41657498,41695442,37945,2,Cntfr-203,31793,Cntfr-203;Cntfr-204;Cntfr-206,Cntfr;Cntfr;Cntfr,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,12,12804,ENSMUSG00000028444,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10258,cg08406509,0.0000388,0.00000467,8.313055027,2.97E-15,gain,yes,-0.0000117,0.00000793,-1.478017352,0.140418407,neg,ns,0.004667291,0.002322026,2.01000779,0.045296419,pos,ns,1.34393613,-0.0000849,0.0000799,-1.063423975,0.288417386,neg,ns,0.136059442,Evx1,Evx1_fiveUTR,6,52313495,52313544,52313543,52313544,50,+,GGTTTCCTTTCATCTTCGCTGTGGCAGACGTTTCTATTTATCCACTTGCG,Promoter (<=1kb),6,52313498,52318378,4881,1,Evx1-201,0,Evx1-201;Evx1-202,Evx1;Evx1,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,7,19,14028,ENSMUSG00000005503,mapped to different genes,6,52313448,52313581,134,*,134,12,0.574626866,1.093877551,0.089552239,6.76E-09,CpGisland,TRUE,U13,Hc-P
14468,cg13489555,-0.00000344,0.00000191,-1.797922493,0.073162208,loss,ns,-0.0000048,0.00000325,-1.477746646,0.140490842,neg,ns,-0.000818591,0.00095143,-0.860379171,0.390244975,neg,ns,0.40866268,0.000000663,0.0000327,0.020272139,0.983839323,pos,ns,0.942558614,Zc3h3,Zc3h3_Intron,15,75799614,75799663,75799662,75799663,50,+,ACAGGGAGGCCATCACATTAACTTTTACAGCACTTGGGGAGCCGTAACCG,"Intron (Zc3h3-201/Zc3h3, intron 4 of 11)",15,75754430,75841915,87486,2,Zc3h3-201,42252,Zc3h3-201;Zc3h3-203;Zc3h3-202,Zc3h3;Zc3h3;Zc3h3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,18,223642,ENSMUSG00000075600,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17932,cg20782198,-0.00000166,0.000000939,-1.766836622,0.078239561,loss,ns,0.00000236,0.0000016,1.477728583,0.140495677,pos,ns,0.00129736,0.000467393,2.775735518,0.005842404,pos,ns,2.233408425,-0.0000364,0.0000161,-2.26665166,0.024100308,neg,ns,0.97798057,Pcf11,Pcf11_Exon,7,92659728,92659777,92659776,92659777,50,-,AGAGGTTTCTTTTTTAATCCACCTTTATTTTCTTCTGTAGGACTATCCCG,"Exon (Pcf11-203/Pcf11, exon 4 of 13)",7,92643543,92669934,26392,2,Pcf11-201,10157,Pcf11-201;Pcf11-203,Pcf11;Pcf11,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,8,74737,ENSMUSG00000041328,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25692,cg17736030,0.000016,0.00000618,2.590583372,0.010034121,gain,ns,0.0000155,0.0000105,1.477621487,0.140524342,pos,ns,0.000674732,0.003073767,0.219513182,0.826394781,pos,ns,0.082812434,0.0000542,0.000105707,0.513209863,0.608170068,pos,ns,0.079495401,Lmo3,Lmo3_fiveUTR,6,138422641,138422690,138422689,138422690,50,+,TTGACCGCATCTGAGCCACAGGTGTCCTCCTTTTAGGCAACTGCAGTCCG,5' UTR,6,138362918,138581968,219051,2,Lmo3-204,159278,Lmo3-204;Lmo3-207;Lmo3-201;Lmo3-206;Lmo3-202;Lmo3-208;Lmo3-203;Lmo3-205,Lmo3;Lmo3;Lmo3;Lmo3;Lmo3;Lmo3;Lmo3;Lmo3,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,38,109593,ENSMUSG00000030226,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25395,cg18953456,-0.00000192,0.0000021,-0.913720675,0.361573737,loss,ns,-0.00000528,0.00000357,-1.477605877,0.14052852,neg,ns,-0.001187497,0.001046423,-1.134815956,0.257329128,neg,ns,0.589511051,-0.0000134,0.000036,-0.373165462,0.709280338,neg,ns,0.938324167,Gm9341,Gm9341_Intergenic_downstream,7,136209068,136209117,136209116,136209117,50,+,GTCTAATTTAGCCCTCATTTAGGCCGCAGGTACCACACAAGGTAAACACG,Distal Intergenic,7,135952798,135953783,986,1,Gm9341-201,256270,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,27,28,668764,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26441,cg25255728,0.0000532,0.00000606,8.782128826,1.11E-16,gain,yes,-0.0000152,0.0000103,-1.477599834,0.140530138,neg,ns,0.010211787,0.003015925,3.385955101,0.000800665,pos,ns,3.096549301,-0.000253903,0.000103717,-2.448023263,0.014918412,neg,ns,0.058087613,Foxa2,Foxa2_Intergenic_downstream,2,148040249,148040298,148040249,148040250,50,+,CGACTGTTGACTTTAGCACACAAAGCAAAGATTTCACTGCCCGCTAGTTT,Downstream (2-3kb),2,148044240,148045464,1225,2,Foxa2-203,5166,Foxa2-202;Foxa2-201;Foxa2-204;Foxa2-203,Foxa2;Foxa2;Foxa2;Foxa2,0;0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,9,25,15376,ENSMUSG00000037025,mapped to different genes,2,148040039,148040250,212,*,212,22,0.712264151,0.84523378,0.103773585,1.88E-17,CpGisland,TRUE,U3,Pr-B
14996,cg27188235,0.000000414,0.00000347,0.119108939,0.905266197,gain,ns,0.00000872,0.0000059,1.47758623,0.14053378,pos,ns,0.002512384,0.001728008,1.453919195,0.146980353,pos,ns,0.832740715,-0.0000467,0.0000594,-0.785942976,0.432501218,neg,ns,0.953753386,Pou4f2,Pou4f2_Intergenic_downstream,8,78422060,78422109,78422060,78422061,50,-,CGCATAATGACGGCTAATTTTCGATCAGATATAAATTAGAGCCCCAACAG,Distal Intergenic,8,78433010,78436645,3636,2,Pou4f2-201,14585,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,23,18997,ENSMUSG00000031688,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
22430,cg13316784,-0.0000142,0.00000816,-1.743032275,0.082319483,loss,ns,-0.0000205,0.0000139,-1.477353437,0.140596107,neg,ns,-0.006356393,0.004062183,-1.564772648,0.118656437,neg,ns,0.925708697,-0.0000863,0.000139698,-0.617936224,0.537071071,neg,ns,0.751744431,Mvk,Mvk_Intergenic_downstream,5,114507451,114507500,114507499,114507500,50,-,AAAGTCTTTATCGGGAATGTCGCCTAATGCATTCATATCAAACAATAGCG,Distal Intergenic,5,114452420,114460572,8153,1,Mvk-207,55080,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,7,17855,ENSMUSG00000041939,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10278,cg14142471,-0.00000412,0.0000135,-0.305857775,0.759918229,loss,ns,-0.0000338,0.0000229,-1.477114525,0.140660096,neg,ns,-0.004226325,0.006703562,-0.630459568,0.528858423,neg,ns,0.276660574,-0.000186848,0.000230535,-0.810498177,0.418275675,neg,ns,0.450626824,Kcnh8,Kcnh8_Intron,17,52330431,52330480,52330431,52330432,50,+,CGAAATAGAAGCCTATTAGTGAATAAAGTAAACTTAAGGGCAAAGTTTAA,"Intron (Gm49912-201/Gm49912-201, intron 1 of 1)",17,52602709,52979194,376486,1,Kcnh8-201,-272229,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,8,211468,ENSMUSG00000035580,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14346,cg03481922,-0.0000642,0.0000222,-2.893173584,0.004083833,loss,ns,0.0000557,0.0000377,1.476969229,0.140699022,pos,ns,0.006750168,0.011045539,0.611121602,0.541566922,pos,ns,0.26634787,-0.000477654,0.000379855,-1.257462293,0.209532754,neg,ns,0.71506058,Gm13653,Gm13653_Intron,2,75209190,75209239,75209190,75209191,50,-,CGCAGTAGGTGAGGATGATGAAATAATAAAGCATTTCCCGTATGTGTTTT,"Intron (2600014E21Rik-210/2600014E21Rik-210, intron 2 of 6)",2,75192277,75192759,483,1,Gm13653-201,16962,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,108168770,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13694,cg17656396,-0.00000409,0.00000217,-1.881308967,0.060866874,loss,ns,0.00000545,0.00000369,1.476873101,0.14072478,pos,ns,0.0000225,0.001081666,0.020775048,0.983438467,pos,ns,0.007252808,0.000032,0.0000372,0.860747241,0.390042495,pos,ns,0.048401766,Rab8a,Rab8a_fiveUTR,8,72161339,72161388,72161339,72161340,50,+,CGTCGGGGAGAGAGTGTAATATGGCGAAGACCTACGATTACCTGTTCAAG,Promoter (<=1kb),8,72161359,72176057,14699,1,Rab8a-202,0,Rab8a-201;Rab8a-203;Rab8a-202,Rab8a;Rab8a;Rab8a,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,5,17274,ENSMUSG00000003037,conserved gene but different region,8,72161136,72161662,527,*,527,47,0.669829222,0.805967721,0.089184061,1.73E-33,CpGisland,TRUE,U1,Pr-A
9894,cg19405706,-0.0000434,0.0000174,-2.497031201,0.013042356,loss,ns,0.0000436,0.0000295,1.476765573,0.140753597,pos,ns,0.049663061,0.008646396,5.743787262,2.21E-08,pos,ns,7.655647275,-0.001655031,0.000297349,-5.565957807,5.65E-08,neg,yes,0.494843199,S1pr3,S1pr3_Exon,13,51418956,51419005,51419004,51419005,50,-,AACCTGATGGTTTTGATTGCCATCTGGAAAAACAATAAATTTCACAACCG,"Exon (S1pr3-201/S1pr3, exon 2 of 2)",13,51408639,51422797,14159,1,S1pr3-201,10317,S1pr3-201,S1pr3,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,13610,ENSMUSG00000067586,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27844,cg05223397,-0.00000435,0.00000263,-1.656154992,0.09870225,loss,ns,0.00000659,0.00000446,1.47666106,0.140781611,pos,ns,0.003591832,0.001307386,2.747338765,0.006359691,pos,ns,2.196564013,-0.00012817,0.000045,-2.850700562,0.004654792,neg,ns,0.951093443,Esrrg,Esrrg_Intron,1,188199854,188199903,188199902,188199903,50,+,AAACCAGATTGCTTTTGCTTACTTGTGGATGACGACTTTGTGATTTGGCG,"Intron (Esrrg-203/Esrrg, intron 7 of 7)",1,187609029,188214386,605358,1,Esrrg-203,590825,Esrrg-203;Esrrg-201;Esrrg-202,Esrrg;Esrrg;Esrrg,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,60,26381,ENSMUSG00000026610,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25420,cg18511505,-0.00000643,0.00000325,-1.978027635,0.048810784,loss,ns,0.00000815,0.00000552,1.476369439,0.140859799,pos,ns,0.002647472,0.001616868,1.637407702,0.102559959,pos,ns,0.98902216,-0.0000716,0.0000556,-1.288426159,0.198558434,neg,ns,0.915370288,Hnrnpr,Hnrnpr_threeUTR,4,136343923,136343972,136343971,136343972,50,-,ATCAGGGAAGCGAGGTTGAGGCTGCCCTGACCTGACATGTCATGATGTCG,3' UTR,4,136310968,136359447,48480,1,Hnrnpr-207,32955,Hnrnpr-204;Hnrnpr-202;Hnrnpr-207;Hnrnpr-201;Hnrnpr-208;Hnrnpr-211,Hnrnpr;Hnrnpr;Hnrnpr;Hnrnpr;Hnrnpr;Hnrnpr,0;0;0;0;7850;4904,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,7,74326,ENSMUSG00000066037,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3430,cg13500074,0.000015,0.00000167,9.002777351,2.28E-17,gain,yes,-0.00000419,0.00000284,-1.476273003,0.140885662,neg,ns,-0.00029426,0.000830886,-0.354151639,0.72346601,neg,ns,0.140581868,-0.0000117,0.0000286,-0.411061229,0.681311649,neg,ns,0.044946333,Bcl11a,Bcl11a_fiveUTR,11,24078076,24078125,24078076,24078077,50,-,CGTCACGTCCGCACTTGAACTTGCAGCTCAGGGGGGCTTTTGCCATTTTT,Promoter (<=1kb),11,24078117,24174123,96007,1,Bcl11a-203,0,A830031A19Rik-201;Bcl11a-201;Bcl11a-203;Bcl11a-205;Bcl11a-202;Bcl11a-204,A830031A19Rik;Bcl11a;Bcl11a;Bcl11a;Bcl11a;Bcl11a,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,10,98,14025,ENSMUSG00000000861,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15228,cg04134624,0.0000119,0.00000176,6.759524256,6.88E-11,gain,yes,0.00000441,0.00000299,1.476195352,0.14090649,pos,ns,0.001185843,0.000875367,1.354680802,0.176505734,pos,ns,0.753241181,0.0000674,0.0000301,2.238469529,0.025900024,pos,ns,0.036427805,Cbx6,Cbx6_fiveUTR,15,79834178,79834227,79834178,79834179,50,+,CGAAGACCCGCTCGCCCACTGCAGACAGCTCCATCTTGCTCAGCGGCACC,Promoter (<=1kb),15,79827837,79834226,6390,2,Cbx6-201,0,Cbx6-203;Cbx6-208;Cbx6-202;Cbx6-201;Cbx6-206;Cbx6-207;Cbx6-204;Cbx6-205;Npcd-201;Npcd-202,Cbx6;Cbx6;Cbx6;Cbx6;Cbx6;Cbx6;Cbx6;Cbx6;Npcd;Npcd,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,4,494448,ENSMUSG00000089715,conserved gene but different region,15,79834018,79834527,510,*,510,64,0.733333333,0.933638444,0.125490196,9.09E-56,CpGisland,TRUE,U1,Pr-A
26892,cg06035850,-0.00000359,0.00000138,-2.606384479,0.009592389,loss,ns,0.00000346,0.00000234,1.475858709,0.140996815,pos,ns,0.000234227,0.000686059,0.341410093,0.733026177,pos,ns,0.134880516,0.00000506,0.0000236,0.214324028,0.83043529,pos,ns,0.960802438,Cbfa2t2,Cbfa2t2_Intron,2,154466201,154466250,154466249,154466250,50,+,TGTCCCTCAACTGCAGGTGACTGTTATTGGCCCCAGCTGCCACCCTTGCG,"Intron (Cbfa2t2-204/Cbfa2t2, intron 1 of 10)",2,154436481,154539356,102876,1,Cbfa2t2-204,29720,Cbfa2t2-204;Cbfa2t2-202;Cbfa2t2-201;Cbfa2t2-203;Cbfa2t2-209,Cbfa2t2;Cbfa2t2;Cbfa2t2;Cbfa2t2;Cbfa2t2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,4,12396,ENSMUSG00000038533,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12059,cg18582738,-0.00000881,0.0000034,-2.588987438,0.010079733,loss,ns,0.00000853,0.00000578,1.475823952,0.141006143,pos,ns,0.00299438,0.001694067,1.767569123,0.078116687,pos,ns,1.107256185,-0.000107966,0.0000583,-1.85321646,0.064801398,neg,ns,0.925700691,Ifih1,Ifih1_Intron,2,62625513,62625562,62625561,62625562,50,+,ATGGCACCTCGCAATTCCCAGAGGTATGTCTTGTTAGAAGCTCAGAGGCG,"Intron (Ifih1-201/Ifih1, intron 3 of 15)",2,62595798,62646211,50414,2,Ifih1-201,20649,Ifih1-201;Ifih1-202;Ifih1-205;Ifih1-204,Ifih1;Ifih1;Ifih1;Ifih1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,71586,ENSMUSG00000026896,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16254,cg18356643,0.0000366,0.00000684,5.348693093,0.000000172,gain,yes,0.0000172,0.0000116,1.475670594,0.141047307,pos,ns,0.008972846,0.003405241,2.63501032,0.008836295,pos,ns,2.053729786,-0.00000211,0.000117106,-0.018007598,0.985644376,neg,ns,0.188617,Bnc2,Bnc2_fiveUTR,4,84672560,84672609,84672560,84672561,50,+,CGACACAGCATTGACTCGTGACATGGCAAGATGAAACGAGAGGTCTGGGC,5' UTR,4,84275095,84675034,399940,2,Bnc2-201,2425,Bnc2-201;Bnc2-202;Bnc2-214;Bnc2-215;Bnc2-206;Bnc2-211;Bnc2-217;Bnc2-207;Bnc2-203;Bnc2-209;Bnc2-204;Bnc2-210,Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,8,91,242509,ENSMUSG00000028487,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
8381,cg06818366,-0.00000509,0.00000402,-1.266060375,0.206442053,loss,ns,0.0000101,0.00000682,1.475516684,0.141088629,pos,ns,0.002139508,0.001999016,1.070280555,0.285325646,pos,ns,0.54465919,-0.0000188,0.0000687,-0.272806764,0.785183396,neg,ns,0.928685503,Zeb2,Zeb2_Intron,2,45071403,45071452,45071451,45071452,50,-,CCGTCACCCATGGATGCCCAGCCAGGGTTTCCCACCTGAGACAGATTGCG,"Intron (Zeb2-212/Zeb2, intron 3 of 10)",2,44983632,45117395,133764,2,Zeb2-212,45943,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23914,cg05577345,0.0000408,0.0000107,3.831931909,0.00015393,gain,ns,0.0000267,0.0000181,1.475500726,0.141092914,pos,ns,0.005540193,0.00530551,1.044233806,0.297190824,pos,ns,0.526964604,0.000133174,0.000182456,0.729895584,0.466005188,pos,ns,0.176785943,Insig2,Insig2_Intron,1,121097429,121097478,121097429,121097430,50,+,CGCGATATGTTGTACTTGAGAGGATAAGATTAAATTTAGTGGGTTTAACT,"Intron (Celrr-202/Celrr-202, intron 1 of 4)",1,121305893,121307318,1426,2,Insig2-206,209840,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,17,72999,ENSMUSG00000003721,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8192,cg17001515,0.0001495,0.0000199,7.528528896,5.63E-13,gain,yes,-0.0000498,0.0000337,-1.475323985,0.141140378,neg,ns,0.032411361,0.009883452,3.27935628,0.001158832,pos,ns,2.935979676,-0.001276149,0.000339891,-3.754582781,0.000207311,neg,ns,0.283299569,Jarid2,Jarid2_fiveUTR,13,44840681,44840730,44840729,44840730,50,+,ACTGCCGCTTGCTTATTACGTACAGGGGAGGATTGTTGACAAGTGCTCCG,Promoter (<=1kb),13,44840691,44914319,73629,1,Jarid2-211,0,Jarid2-212;Jarid2-210;Jarid2-201;Jarid2-209;Jarid2-203;Jarid2-208;Jarid2-215;Jarid2-216;Jarid2-206;Jarid2-205;Jarid2-202;Jarid2-211;Jarid2-207,Jarid2;Jarid2;Jarid2;Jarid2;Jarid2;Jarid2;Jarid2;Jarid2;Jarid2;Jarid2;Jarid2;Jarid2;Jarid2,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,8,21,16468,ENSMUSG00000038518,conserved gene but different region,13,44840615,44840747,133,*,133,10,0.62406015,0.781433608,0.07518797,0.000000942,CpGisland,TRUE,U2,Pr-W
6463,cg23758231,-0.0000097,0.00000366,-2.65317683,0.008384655,loss,ns,-0.00000916,0.00000621,-1.475316529,0.14114238,neg,ns,-0.00026791,0.00181923,-0.147265626,0.883018094,neg,ns,0.054030397,-0.0000862,0.0000626,-1.378521802,0.169036231,neg,ns,0.953223608,Grhl2,Grhl2_threeUTR,15,37360787,37360836,37360835,37360836,50,-,ACACCTTCATCCTCAACATGGAGAGCATGGTGGAGGGCTTCAAGGTCACG,3' UTR,15,37233036,37363569,130534,1,Grhl2-201,127751,Grhl2-201;Grhl2-205;Grhl2-202,Grhl2;Grhl2;Grhl2,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,8,252973,ENSMUSG00000022286,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8737,cg15436852,-0.00000175,0.00000372,-0.470300315,0.638471172,loss,ns,0.00000932,0.00000632,1.475193317,0.141175477,pos,ns,0.004302796,0.001850352,2.325393847,0.020696039,pos,ns,1.684112771,-0.0000978,0.0000636,-1.537690138,0.12514443,neg,ns,0.927069144,Tmem63b,Tmem63b_Exon,17,45661860,45661909,45661860,45661861,50,-,CGGCAGGTAGGCGTAGTAGAGATTGTACCTGTCTACCAGGTGCTTCAGCA,"Exon (Tmem63b-201/Tmem63b, exon 21 of 24)",17,45660171,45686259,26089,2,Tmem63b-201,24350,Capn11-201;Capn11-202;Tmem63b-201;Tmem63b-208;Tmem63b-203,Capn11;Capn11;Tmem63b;Tmem63b;Tmem63b,-2535;-2563;0;0;4545,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,12,224807,ENSMUSG00000036026,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14796,cg09472391,-0.00000267,0.00000409,-0.653751826,0.513756342,loss,ns,0.0000103,0.00000695,1.475179163,0.141179279,pos,ns,0.005525714,0.002036213,2.713720286,0.007025412,pos,ns,2.15332821,-0.000148681,0.00007,-2.123246266,0.034525195,neg,ns,0.932965594,Nufip2,Nufip2_threeUTR,11,77709940,77709989,77709988,77709989,50,+,TAAGGAATCAAATTTATTTCAAGAGACTACACATGGTTATTTAATCTCCG,3' UTR,11,77686155,77712741,26587,1,Nufip2-201,23785,Nufip2-201;Nufip2-204,Nufip2;Nufip2,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,10,68564,ENSMUSG00000037857,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20099,cg18463235,-0.00000167,0.000000835,-2.001176918,0.046244757,loss,ns,0.00000209,0.00000142,1.475158977,0.141184702,pos,ns,-0.000260278,0.000415628,-0.62622707,0.53162684,neg,ns,0.274393101,-0.00000724,0.0000143,-0.506583301,0.612807334,neg,ns,0.976142203,Atf7,Atf7_Intron,15,102563867,102563916,102563915,102563916,50,+,GATTAGGAGAACCATTTAACTTCTTGGCCCCTACAGTGCTGCAGCAGGCG,"Intron (Gm28047-201/Gm28047, intron 2 of 12)",15,102525946,102625073,99128,2,Atf7-211,61157,Atf7-211;Atf7-210;Atf7-209;Atf7-202;Atf7-203;Atf7-205;Atf7-204;Atf7-206;Atf7-208;Atf7-213;Atf7-212;Gm28047-201,Atf7;Atf7;Atf7;Atf7;Atf7;Atf7;Atf7;Atf7;Atf7;Atf7;Atf7;Gm28047,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,11,223922,ENSMUSG00000099083,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17010,cg01676370,-0.00000385,0.00000582,-0.662053594,0.508428723,loss,ns,-0.0000146,0.00000988,-1.475044167,0.141215548,neg,ns,-0.006500654,0.002894655,-2.245744015,0.025424633,neg,ns,1.594745299,0.000133116,0.0000995,1.337220488,0.182131035,pos,ns,0.810634036,Zfp423,Zfp423_Exon,8,87859304,87859353,87859304,87859305,50,+,CGGTGGTCCGTCAGGTCTGCCAGAGACTCGAAGTCCTGCTGACAGTGATC,"Exon (Zfp423-202/Zfp423, exon 3 of 8)",8,87661810,87959595,297786,2,Zfp423-202,100242,Zfp423-202;Zfp423-201;Zfp423-207;Zfp423-205;Zfp423-204,Zfp423;Zfp423;Zfp423;Zfp423;Zfp423,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,53,94187,ENSMUSG00000045333,conserved gene and region,8,87859242,87859455,214,*,214,14,0.551401869,0.876792508,0.065420561,1.65E-08,CpGisland,TRUE,U15,NS
25026,cg17625993,-0.0000149,0.00000307,-4.862865354,0.0000018,loss,yes,0.00000769,0.00000521,1.474993121,0.141229265,pos,ns,0.000564306,0.001526476,0.369679238,0.711873911,pos,ns,0.147596923,-0.0000595,0.0000525,-1.134291869,0.257548488,neg,ns,0.948182235,Fgfr2,Fgfr2_Intron,7,131589677,131589726,131589677,131589678,50,-,CGGTGATACATTTTGTACAATAATTAGTTATTTGATTACTTTTGTTTTAG,"Intron (Fgfr2-217/Fgfr2, intron 2 of 6)",7,130162451,133123350,2960900,2,Fgfr2-217,1533624,Fgfr2-217,Fgfr2,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,58,79,14183,ENSMUSG00000030849,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1722,cg03039203,0.00000924,0.00000176,5.236801639,0.000000302,gain,yes,0.00000442,0.000003,1.474734002,0.141298908,pos,ns,0.000797683,0.000878037,0.90848447,0.364328036,pos,ns,0.438507408,0.0000208,0.0000302,0.687579734,0.49223158,pos,ns,0.96783908,Pclo,Pclo_threeUTR,5,14794014,14794063,14794014,14794015,50,+,CGCATTCAACCAAGTAAAAGACGCAAATAAATTCCTCAGCATGGCAGCTT,3' UTR,5,14514918,14795993,281076,1,Pclo-202,279096,Pclo-202;Pclo-201;Pclo-203;Pclo-204,Pclo;Pclo;Pclo;Pclo,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,2,26875,ENSMUSG00000061601,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12958,cg10801888,0.00000229,0.00000252,0.90535421,0.365980861,gain,ns,-0.00000632,0.00000429,-1.474683529,0.141312476,neg,ns,0.001277903,0.001256532,1.017008151,0.309942615,pos,ns,0.508718707,-0.0000209,0.0000432,-0.482611193,0.629712441,neg,ns,0.926695216,Myh10,Myh10_Exon,11,68759758,68759807,68759758,68759759,50,+,CGGATCAACTTTGATGTAACTGGCTATATCGTTGGGGCCAACATTGAAAC,"Exon (Myh10-203/Myh10, exon 7 of 41)",11,68691915,68816632,124718,1,Myh10-203,67843,Myh10-203;Myh10-201;Myh10-210;Myh10-202,Myh10;Myh10;Myh10;Myh10,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,77579,ENSMUSG00000020900,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16835,cg04827961,-0.0000118,0.00000302,-3.9239396,0.00010734,loss,ns,-0.00000756,0.00000513,-1.47463107,0.14132658,neg,ns,0.001671429,0.001502461,1.112460523,0.266802127,pos,ns,0.573810712,-0.00000578,0.0000517,-0.111933804,0.910948335,neg,ns,0.940087199,Lonp2,Lonp2_Exon,8,86713964,86714013,86714012,86714013,50,+,TGTCACAAAAGATGGACCATCTGCTGGAGTTACCATAGTAACCTGTCTCG,"Exon (Lonp2-201/Lonp2, exon 14 of 15)",8,86624043,86716631,92589,1,Lonp2-201,89921,Lonp2-201;Lonp2-205;Lonp2-203;Lonp2-202;Lonp2-207,Lonp2;Lonp2;Lonp2;Lonp2;Lonp2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,66887,ENSMUSG00000047866,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4550,cg11073876,-0.0000122,0.00000528,-2.31448757,0.021294249,loss,ns,0.0000132,0.00000897,1.474336582,0.141405773,pos,ns,-0.000418379,0.002627167,-0.159251092,0.873574755,neg,ns,0.058699925,-0.000121471,0.0000903,-1.34447672,0.179777232,neg,ns,0.895953657,Gm7917,Gm7917_Intergenic_upstream,18,29678089,29678138,29678137,29678138,50,-,TTTTATGGGAAAACATGTTGTTACCTTACAGCTGCCCACATCACATGCCG,Distal Intergenic,18,29657054,29657596,543,2,Gm7917-201,-20542,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,8,666073,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18674,cg10988825,0.0000019,0.00000328,0.579494927,0.562676149,gain,ns,-0.00000822,0.00000558,-1.474303746,0.141414605,neg,ns,0.000437364,0.001634292,0.267616995,0.789172113,pos,ns,0.10282827,-0.000117028,0.0000562,-2.082223258,0.03814189,neg,ns,0.909206965,Tenm4,Tenm4_Exon,7,96702667,96702716,96702715,96702716,50,-,GGGACATTGCAGGACAACCTCATTGAGATGGACATTCTCGGCGCCTCCCG,"Exon (Tenm4-201/Tenm4, exon 9 of 33)",7,96171246,96908569,737324,1,Tenm4-201,531421,Tenm4-201;Tenm4-203;Tenm4-202;Tenm4-207,Tenm4;Tenm4;Tenm4;Tenm4,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,17,26,23966,ENSMUSG00000048078,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9821,cg17042709,-0.00000198,0.00000265,-0.748386823,0.454794272,loss,ns,0.00000663,0.0000045,1.474257578,0.141427024,pos,ns,0.002815297,0.001317585,2.136710082,0.033404213,pos,ns,1.47619876,-0.000115698,0.0000453,-2.553386187,0.011146649,neg,ns,0.94849103,Gm48777,Gm48777_Intergenic_upstream,12,50953930,50953979,50953930,50953931,50,+,CGATAAATGCATTTTGAAAGCAAAGAGTAAAATGTAACTTTCTTCAGTAT,Distal Intergenic,12,50895099,50895471,373,2,Gm48777-201,-58459,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,10,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23981,cg27501557,-0.00000319,0.00000423,-0.752612467,0.452253935,loss,ns,0.0000106,0.00000719,1.474111918,0.141466212,pos,ns,0.007859772,0.002106406,3.731365464,0.000226473,pos,ns,3.644982687,-0.000147432,0.0000724,-2.035248141,0.042676249,neg,ns,0.894827112,Nktr,Nktr_Exon,9,121728640,121728689,121728640,121728641,50,+,CGTGTGGTTAAAAACTTTATGATTCAGGGTGGGGACTTCAGTGAAGGTAG,"Exon (Nktr-214/Nktr, exon 4 of 11)",9,121719169,121742718,23550,1,Nktr-214,9471,Nktr-214;Nktr-201;Nktr-212;Nktr-213;Nktr-206;Nktr-216;Nktr-204;Nktr-205;Nktr-207;Nktr-208;Nktr-203,Nktr;Nktr;Nktr;Nktr;Nktr;Nktr;Nktr;Nktr;Nktr;Nktr;Nktr,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,3,18087,ENSMUSG00000032525,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19694,cg12268991,-0.0000193,0.00000721,-2.684388364,0.007656932,loss,ns,0.000018,0.0000122,1.474066243,0.141478502,pos,ns,0.001166192,0.003586733,0.32514059,0.745293994,pos,ns,0.127672379,-0.0000602,0.000123347,-0.488216691,0.625741509,neg,ns,0.061972651,Stag1,Stag1_fiveUTR,9,100643705,100643754,100643705,100643706,50,+,CGTAACAACCCCCCCACATCGGGAATAACACACCGGAGACTTTTGGGGGG,5' UTR,9,100597798,100737996,140199,1,Stag1-205,45907,Stag1-205;Stag1-213;Stag1-206;Stag1-210;Stag1-204;Stag1-212;Stag1-201;Stag1-208;Stag1-216;Stag1-203;Stag1-207,Stag1;Stag1;Stag1;Stag1;Stag1;Stag1;Stag1;Stag1;Stag1;Stag1;Stag1,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,6,15,20842,ENSMUSG00000037286,conserved gene and region,9,100642808,100644342,1535,*,1535,206,0.725732899,1.021439208,0.134201954,3.49E-185,CpGisland,TRUE,U1,Pr-A
27738,cg23701625,0.00000291,0.00000514,0.565136502,0.572389672,gain,ns,0.0000129,0.00000873,1.473993475,0.141498084,pos,ns,0.00273274,0.002558559,1.068077563,0.286316546,pos,ns,0.543153554,-0.0000861,0.000088,-0.978073611,0.328800566,neg,ns,0.894397754,Stum,Stum_Exon,1,180442553,180442602,180442601,180442602,50,-,TGACCATGTCCATGCCCCAGAAGATGCTCATGATCCAGCCCACCATGACG,"Exon (Stum-201/Stum, exon 2 of 4)",1,180432387,180483467,51081,2,Stum-201,40865,Stum-201;Stum-205;Stum-204;Stum-203;Stum-202;Stum-206,Stum;Stum;Stum;Stum;Stum;Stum,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,381310,ENSMUSG00000053963,conserved gene and region,1,180442601,180442716,116,*,116,11,0.637931035,0.934798535,0.094827586,0.000000019,CpGisland,TRUE,NA,NRS
17842,cg24625193,-0.00000173,0.00000523,-0.330786783,0.74102901,loss,ns,0.0000131,0.00000889,1.473930175,0.141515119,pos,ns,-0.007002206,0.002604253,-2.688758287,0.007559716,neg,ns,2.121494517,0.0000627,0.0000896,0.699791355,0.484582402,pos,ns,0.823909943,Irx3,Irx3_Intron,8,92026994,92027043,92026994,92026995,50,+,CGCCATGAAAGCAGATGTGAAATTTAATTCTCCAGGCCATCGCTGTCTGG,"Intron (Gm28516-201/Gm28516-201, intron 1 of 3)",8,91798525,91802067,3543,2,Irx3-202,-224927,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,36,16373,ENSMUSG00000031734,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13255,cg15451835,-0.000000249,0.0000027,-0.092310611,0.926510883,loss,ns,0.00000675,0.00000458,1.473925499,0.141516378,pos,ns,0.001107076,0.001342245,0.824794194,0.410122638,pos,ns,0.387086258,-0.00000213,0.0000462,-0.046085972,0.9632714,neg,ns,0.95498147,Gm44690,Gm44690_Promoter,7,69890740,69890789,69890740,69890741,50,-,CGCTGATGCTAATTATAAATTTAATTTGCATTTTAATTAGAATGGTAGCA,Promoter (6-7kb),7,69883979,69884360,382,2,Gm44690-201,-6429,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,5,24,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4640,cg14399645,-0.000000521,0.00000189,-0.275245726,0.783310824,loss,ns,-0.00000474,0.00000322,-1.473921037,0.141517579,neg,ns,0.000640289,0.00094268,0.679221753,0.497504173,pos,ns,0.303203272,-0.0000191,0.0000324,-0.587894114,0.557031377,neg,ns,0.048691464,Mecom,Mecom_fiveUTR,3,30013277,30013326,30013325,30013326,50,+,TTTTAAAGTGACAGCAGCCTCCTCTGGCGGGAGAGGTCACAAAAAGGTCG,5' UTR,3,29951299,30509733,558435,2,Mecom-212,496407,Mecom-206;Mecom-212;Mecom-202;Mecom-203;Mecom-210;Mecom-213;Mecom-207;Mecom-208;Mecom-205;Mecom-216;Mecom-214;Mecom-211,Mecom;Mecom;Mecom;Mecom;Mecom;Mecom;Mecom;Mecom;Mecom;Mecom;Mecom;Mecom,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,13,80,14013,ENSMUSG00000027684,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
11591,cg21573613,0.00000493,0.0000018,2.738088891,0.006536925,gain,ns,0.00000451,0.00000306,1.47383141,0.141541702,pos,ns,0.001157147,0.000895591,1.29204904,0.197302519,pos,ns,0.70486737,-0.0000359,0.0000308,-1.166788227,0.244192669,neg,ns,0.049456292,Pdzd8,Pdzd8_Exon,19,59344758,59344807,59344806,59344807,50,-,ATCTTCTTGAGCTGGTTGACGATGATGGAGGTGAGCTGGGGCATGGGCCG,Promoter (<=1kb),19,59297178,59345780,48603,2,Pdzd8-201,973,Pdzd8-201,Pdzd8,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,107368,ENSMUSG00000074746,conserved gene and region,19,59344749,59346162,1414,*,1414,187,0.719943423,1.021076614,0.132248939,9.24E-167,CpGisland,TRUE,U1,Pr-A
25703,cg14557962,-0.0000114,0.00000497,-2.293292116,0.022500225,loss,ns,0.0000124,0.00000844,1.473778653,0.141555904,pos,ns,0.003409331,0.002471643,1.379378229,0.168772411,pos,ns,0.772698544,-0.000160577,0.000085,-1.88915288,0.059804498,neg,ns,0.896510347,Nek7,Nek7_Intron,1,138496928,138496977,138496976,138496977,50,-,ACCTTCTATCTGGGCCAGACTTTGATATTTGCCCCTTGGCTGAGAATCCG,"Intron (Nek7-202/Nek7, intron 9 of 9)",1,138482875,138619749,136875,2,Nek7-202,122772,Nek7-202;Nek7-203;Nek7-201,Nek7;Nek7;Nek7,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,9,59125,ENSMUSG00000026393,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13927,cg12286373,0.0000147,0.00000591,2.481257687,0.013621922,gain,ns,0.0000148,0.00001,1.473758294,0.141561385,pos,ns,0.010628189,0.002939107,3.616128064,0.000348936,pos,ns,3.457253906,-0.000494814,0.000101076,-4.895482031,0.00000158,neg,yes,0.54762219,Atp2b3,Atp2b3_Intron,X,73525065,73525114,73525113,73525114,50,+,CCAGGCCTTGTTAAATATTTAAAATGTCAAGGCCCCTGGGAACCTGCCCG,"Intron (Atp2b3-201/Atp2b3, intron 2 of 20)",20,73503086,73558214,55129,1,Atp2b3-201,21979,Atp2b3-201;Atp2b3-202;Atp2b3-203,Atp2b3;Atp2b3;Atp2b3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,3,320707,ENSMUSG00000031376,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18442,cg21749105,-0.00000784,0.00000314,-2.497421651,0.013028292,loss,ns,0.00000786,0.00000534,1.473648315,0.141590994,pos,ns,0.003174341,0.001563377,2.030438281,0.043165381,pos,ns,1.364864426,-0.000110051,0.0000538,-2.046909283,0.041509899,neg,ns,0.932988868,Trpc1,Trpc1_threeUTR,9,95736842,95736891,95736842,95736843,50,+,CGTTTTGGTCGATGATTAAGTAGTATATCAACAGCTCCCACTACTTCAGA,3' UTR,9,95705082,95750358,45277,2,Trpc1-204,13467,Trpc1-204;Trpc1-201;Trpc1-206;Trpc1-207;Trpc1-202,Trpc1;Trpc1;Trpc1;Trpc1;Trpc1,0;0;0;0;-4633,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,5,22063,ENSMUSG00000032839,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16811,cg04565674,-0.000000324,0.00000369,-0.087866159,0.930039786,loss,ns,-0.00000924,0.00000627,-1.473619182,0.141598838,neg,ns,-0.002873356,0.001837046,-1.564117804,0.118810125,neg,ns,0.925146546,0.0000469,0.0000632,0.742584392,0.458295652,pos,ns,0.474003823,Rraga,Rraga_Exon,4,86576209,86576258,86576209,86576210,50,-,CGAACTGGAAAAGGACATGCATTATTACCAGTCGTGTCTGGAGGCCATCC,Promoter (<=1kb),4,86575668,86577285,1618,1,Rraga-201,541,Haus6-201;Rraga-201,Haus6;Rraga,35797;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,68441,ENSMUSG00000070934,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
11506,cg17233785,0.0000419,0.00000719,5.837099118,1.34E-08,gain,yes,-0.000018,0.0000122,-1.47354307,0.141619333,neg,ns,-0.004158999,0.003576641,-1.162822573,0.245795841,neg,ns,0.609425469,-0.0000427,0.000123,-0.347068863,0.728775079,neg,ns,0.730448475,Nptn,Nptn_Exon,9,58618883,58618932,58618931,58618932,50,-,CCGGCTCACCTTGGAGGACTCTGGGACTTACGAGTGCAGGGCCAGCAACG,"Exon (Nptn-212/Nptn, exon 2 of 8)",9,58582240,58651318,69079,1,Nptn-212,36643,Nptn-212;Nptn-201;Nptn-213;Nptn-206;Nptn-203;Nptn-202;Nptn-211;Nptn-207;Nptn-204,Nptn;Nptn;Nptn;Nptn;Nptn;Nptn;Nptn;Nptn;Nptn,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,20,22,20320,ENSMUSG00000032336,conserved gene and region,9,58618678,58618932,255,*,255,20,0.6,0.879917184,0.078431373,1.96E-13,CpGisland,TRUE,NA,NRS
16486,cg09382847,0.00000805,0.00000769,1.047754173,0.295568082,gain,ns,-0.0000192,0.0000131,-1.473437461,0.141647775,neg,ns,-0.004702238,0.003825282,-1.229252387,0.219909411,neg,ns,0.657756185,0.00032979,0.000131551,2.506931989,0.012689866,pos,ns,0.829321159,Gm37240,Gm37240_Intron,3,85161042,85161091,85161042,85161043,50,+,CGACAGACGGTAATGTTTATGAGATGTATAATTCAAGGCAAATCTGTCCA,"Intron (Gm37240-203/Gm37240, intron 3 of 9)",3,84496426,85887516,1391091,2,Gm37240-203,726425,Gm37240-203,Gm37240,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14666,cg20993115,0.00000291,0.0000027,1.075710076,0.282893421,gain,ns,-0.00000677,0.00000459,-1.473403509,0.141656919,neg,ns,-0.003546081,0.001345153,-2.636191129,0.008806288,neg,ns,2.055207096,0.00000904,0.0000463,0.19537312,0.84522885,pos,ns,0.954557005,Ctnna2,Ctnna2_Intron,6,77157215,77157264,77157263,77157264,50,-,TTTGTAAAGAATTACAAGGTTCTTAAAATTACACTTTGCTCTCTGTAGCG,"Intron (Ctnna2-204/Ctnna2, intron 8 of 19)",6,76881637,77979699,1098063,2,Ctnna2-204,822435,Ctnna2-204;Ctnna2-205;Ctnna2-202;Ctnna2-201,Ctnna2;Ctnna2;Ctnna2;Ctnna2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,24,12386,ENSMUSG00000063063,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24618,cg19968738,-0.000000355,0.000000621,-0.572668418,0.567284329,loss,ns,-0.00000155,0.00000105,-1.47332922,0.14167693,neg,ns,0.000000423,0.000308965,0.001369591,0.998908106,pos,ns,0.000474463,-0.00000234,0.0000106,-0.219954701,0.826051205,neg,ns,0.985308538,Kif5a,Kif5a_Exon,10,127234066,127234115,127234114,127234115,50,-,ACGTCTTGAACGAACAGCTTGCGAAGGTTGTGGAGGGTCTGGAGTTCCCG,"Exon (Kif5a-201/Kif5a, exon 22 of 29)",10,127225696,127263348,37653,2,Kif5a-201,29233,Kif5a-201;Kif5a-202;Kif5a-203,Kif5a;Kif5a;Kif5a,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,8,16572,ENSMUSG00000074657,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14421,cg23222225,0.0000573,0.00000859,6.665036573,1.21E-10,gain,yes,-0.0000215,0.0000146,-1.473284684,0.141688927,neg,ns,0.011153826,0.004277219,2.607728662,0.009555627,pos,ns,2.019740801,-0.000232615,0.000147093,-1.581409596,0.114804122,neg,ns,0.469651768,Slc4a3,Slc4a3_fiveUTR,1,75549579,75549628,75549627,75549628,50,+,TACGTCATGGAAAGTTGCCAGGGCCTGAGGACAGGGACAGGAACAATCCG,Promoter (<=1kb),1,75549599,75551382,1784,1,Slc4a3-211,0,Slc4a3-202;Slc4a3-203;Slc4a3-210;Slc4a3-201;Slc4a3-209;Slc4a3-206;Slc4a3-205;Slc4a3-212;Slc4a3-211;Slc4a3-207;Slc4a3-208;Slc4a3-204,Slc4a3;Slc4a3;Slc4a3;Slc4a3;Slc4a3;Slc4a3;Slc4a3;Slc4a3;Slc4a3;Slc4a3;Slc4a3;Slc4a3,0;3283;3117;0;3052;3046;0;2923;0;-140;-967;-2081,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,2,20536,ENSMUSG00000006576,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9254,cg18468523,-0.0000024,0.00000204,-1.18017978,0.238833519,loss,ns,-0.00000509,0.00000346,-1.473116643,0.141734201,neg,ns,-0.002545211,0.001012964,-2.512637827,0.012490597,neg,ns,1.903416818,0.0000377,0.0000348,1.083313492,0.279511162,pos,ns,0.948200381,Cadm1,Cadm1_Exon,9,47850270,47850319,47850318,47850319,50,-,AGGTACATACTTCACTCATGAAGCCAAAGGAGCCGATGACGCAGCAGACG,"Exon (Cadm1-204/Cadm1, exon 10 of 10)",9,47530173,47853385,323213,1,Cadm1-204,320097,Cadm1-204;Cadm1-209;Cadm1-206;Cadm1-202;Cadm1-203;Cadm1-201,Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,13,77,54725,ENSMUSG00000032076,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23331,cg19961179,-0.00000374,0.00000582,-0.643050153,0.520666914,loss,ns,-0.0000146,0.00000989,-1.473109385,0.141736157,neg,ns,-0.006420463,0.002896786,-2.216409316,0.027389191,neg,ns,1.562420792,0.0000563,0.0000996,0.564778113,0.572633144,pos,ns,0.823447224,Slc6a9,Slc6a9_Exon,4,117855950,117855999,117855998,117855999,50,+,TTTGTACTGACGAGCGTGGGCTATGCCGTGGGCCTGGGCAATGTCTGGCG,"Exon (Slc6a9-202/Slc6a9, exon 4 of 15)",4,117834506,117869296,34791,1,Slc6a9-202,21444,Slc6a9-202;Slc6a9-201;Slc6a9-207;Slc6a9-210;Slc6a9-206;Slc6a9-204;Slc6a9-211;Slc6a9-209;Slc6a9-203;Slc6a9-205,Slc6a9;Slc6a9;Slc6a9;Slc6a9;Slc6a9;Slc6a9;Slc6a9;Slc6a9;Slc6a9;Slc6a9,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,8,14664,ENSMUSG00000028542,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8788,cg07588584,-0.0000111,0.0000055,-2.022832789,0.043948523,loss,ns,-0.0000138,0.00000934,-1.472626627,0.141866288,neg,ns,-0.003966394,0.0027365,-1.449440939,0.148225342,neg,ns,0.829077538,-0.0000781,0.0000941,-0.82951014,0.407454087,neg,ns,0.831416385,Dscaml1,Dscaml1_threeUTR,9,45753639,45753688,45753687,45753688,50,+,CAGATGCTTATGTGTTAATACCTTTTTCTATGAAAAAAGACCCAGCGCCG,3' UTR,9,45430291,45753712,323422,1,Dscaml1-201,323348,Dscaml1-211;Dscaml1-201;Dscaml1-210;Dscaml1-203,Dscaml1;Dscaml1;Dscaml1;Dscaml1,0;0;0;2940,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,32,114873,ENSMUSG00000032087,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1449,cg20152954,0.000148439,0.0000139,10.71734439,5.24E-23,gain,yes,0.0000346,0.0000235,1.472592163,0.141875581,pos,ns,-0.004388689,0.00689346,-0.636645234,0.52482577,neg,ns,0.279984848,0.00078873,0.000237066,3.327053145,0.000983295,pos,ns,0.717981242,C1ql3,C1ql3_Exon,2,13010259,13010308,13010307,13010308,50,+,CCTGGTTGTTTTTGCAGAGATCAGCCCACATGCTGGTGCCGTCCCCTCCG,"Exon (C1ql3-201/C1ql3, exon 1 of 2)",2,13003457,13011806,8350,2,C1ql3-201,1498,C1ql3-201,C1ql3,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,9,227580,ENSMUSG00000049630,conserved gene and region,2,13010298,13010656,359,*,359,37,0.679665738,0.892494793,0.103064067,6.15E-29,CpGisland,TRUE,U3,Pr-B
6961,cg12861374,0.0000349,0.000044,0.792531842,0.428656718,gain,ns,-0.000110078,0.0000748,-1.472553442,0.141886023,neg,ns,0.034116351,0.021900055,1.557820318,0.12029613,pos,ns,0.919748343,-0.001642554,0.000753141,-2.180938137,0.029939341,neg,ns,0.771669261,Ofcc1,Ofcc1_Intron,13,40208072,40208121,40208072,40208073,50,-,CGCCTCTATGAATTTTATACTGAAATATATTGTGATAGTTTTGCATGCCA,"Intron (Ofcc1-201/Ofcc1, intron 7 of 18)",13,40001882,40288011,286130,2,Ofcc1-201,79890,Ofcc1-201;Ofcc1-203,Ofcc1;Ofcc1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,8,218165,ENSMUSG00000047094,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21851,cg12194453,0.0000112,0.00000869,1.292306196,0.197213595,gain,ns,0.0000217,0.0000148,1.472372667,0.141934781,pos,ns,0.004570474,0.004323,1.057246034,0.291222487,pos,ns,0.535775094,-0.000330268,0.000148668,-2.221517134,0.02703794,neg,ns,0.737999053,Gm1943,Gm1943_Exon,8,109251485,109251534,109251533,109251534,50,-,GTGGCGTTGCCCCTGAATGGATGGCACGGTGCCAACTCTTCTGCCATCCG,"Exon (D030068K23Rik-202/D030068K23Rik-202, exon 10 of 10)",8,109340691,109340864,174,2,Gm1943-201,89379,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,28,384864,NA,mapped to different genes,8,109251360,109251796,437,*,437,24,0.544622426,0.749571184,0.054919909,1.62E-12,CpGisland,TRUE,U15,NS
4393,cg09585004,0.0000102,0.0000138,0.739852794,0.459949234,gain,ns,-0.0000346,0.0000235,-1.472364395,0.141937012,neg,ns,-0.010190105,0.006883927,-1.480275005,0.139815434,neg,ns,0.854444884,0.000203145,0.000236738,0.858100464,0.391499947,pos,ns,0.237068255,Efemp1,Efemp1_Intergenic_upstream,11,28734979,28735028,28735027,28735028,50,-,CCACCACCTGCAAATACCCCAGGAAAAGCAGTTGGAAACAATAAAACACG,Distal Intergenic,11,28853204,28926743,73540,1,Efemp1-201,-118225,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,2,216616,ENSMUSG00000020467,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20297,cg03734211,0.0000514,0.00000494,10.39500172,6.54E-22,gain,yes,-0.0000124,0.0000084,-1.47234404,0.141942504,neg,ns,0.007083004,0.002460606,2.87856048,0.004272639,pos,ns,2.369303753,-0.000145186,0.0000846,-1.715742187,0.087208366,neg,ns,0.122635058,Hoxc5,Hoxc5_Exon,15,102991067,102991116,102991115,102991116,50,-,ACAGTCCCTTTATGGGGCTCAGCAAGAGGCGAGCGTGGTGCAATATCCCG,"Exon (Hoxc8-201/Hoxc8, exon 1 of 2)",15,102967443,103015676,48234,1,Hoxc5-202,23624,Hoxc5-202;Hoxc8-201;Hoxc8-202,Hoxc5;Hoxc8;Hoxc8,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,72,134,15424,ENSMUSG00000022485,conserved gene and region,15,102990435,102991303,869,*,869,73,0.63406214,0.844205792,0.084004603,1.12E-49,CpGisland,TRUE,U13,Hc-P
7213,cg10733902,0.0000241,0.00000923,2.609284556,0.009513234,gain,ns,0.0000231,0.0000157,1.472139109,0.141997795,pos,ns,0.010069793,0.004595189,2.191377482,0.029168335,pos,ns,1.535088363,-0.0000638,0.000158028,-0.403864973,0.68659047,neg,ns,0.742739721,Gria3,Gria3_Intron,X,41654948,41654997,41654948,41654949,50,+,CGGGTACCCTTAGTGACGAGTAATCGGCAAGACTGTTATCTTATTATTGA,"Intron (Gria3-202/Gria3, intron 15 of 16)",20,41401128,41676585,275458,1,Gria3-202,253820,Gria3-202;Gria3-201;Gria3-208;Gria3-206;Gria3-209,Gria3;Gria3;Gria3;Gria3;Gria3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,26,53623,ENSMUSG00000001986,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8003,cg22202408,0.0000422,0.0000062,6.797777996,5.46E-11,gain,yes,-0.0000155,0.0000105,-1.471875408,0.142068967,neg,ns,0.005930738,0.003086698,1.921385517,0.055599841,pos,ns,1.25492645,-0.000154774,0.000106151,-1.458052443,0.145838423,neg,ns,0.177240218,Pax2,Pax2_Intergenic_upstream,19,44676821,44676870,44676869,44676870,50,+,AGCCTGCTTTTGTTGGCAGGCCTCCGCAATTATGCATCTCATTATGGGCG,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-79175,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
913,cg10131194,0.00000884,0.00000254,3.48349298,0.000566146,gain,ns,0.00000634,0.00000431,1.471770852,0.142097194,pos,ns,0.003118714,0.001262771,2.469737209,0.014059551,pos,ns,1.85202854,-0.0000525,0.0000434,-1.209602563,0.227353063,neg,ns,0.070759011,Gdf6,Gdf6_Intron,4,9847178,9847227,9847226,9847227,50,-,AGGGAAAGCCTCACTTTCCCTCTCACTGATTTTGATTTGATGTGTCACCG,"Intron (Gdf6-201/Gdf6, intron 1 of 1)",4,9844372,9862345,17974,1,Gdf6-201,2806,Gdf6-201,Gdf6,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,11,242316,ENSMUSG00000051279,conserved gene and region,4,9847226,9847435,210,*,210,17,0.580952381,0.959419511,0.080952381,1.02E-11,CpGisland,TRUE,NA,NRS
3867,cg19741372,-0.0000119,0.00000828,-1.439937291,0.150894228,loss,ns,0.0000207,0.0000141,1.471744669,0.142104263,pos,ns,-0.002980987,0.004121743,-0.723234722,0.470081023,neg,ns,0.327827281,-0.00000967,0.000141746,-0.068212527,0.94566043,neg,ns,0.516292142,Celf4,Celf4_Intron,18,25645998,25646047,25646046,25646047,50,+,AGCTGCTCCCAGCTGAAACAGGCCTTAATTGCACCCCCGTTGCCATGGCG,"Intron (Celf4-202/Celf4, intron 2 of 12)",18,25477632,25753983,276352,2,Celf4-202,107936,Celf4-202;Celf4-201;Celf4-203;Celf4-207;Celf4-206;Celf4-209,Celf4;Celf4;Celf4;Celf4;Celf4;Celf4,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,59,108013,ENSMUSG00000024268,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16454,cg15696551,-0.00000233,0.0000016,-1.458273339,0.145777587,loss,ns,-0.00000399,0.00000271,-1.471710833,0.142113399,neg,ns,-0.000156936,0.000795132,-0.197371441,0.843666225,neg,ns,0.073829337,-0.0000245,0.0000273,-0.897088491,0.370367842,neg,ns,0.956275579,Ylpm1,Ylpm1_Exon,12,85028804,85028853,85028852,85028853,50,+,TCAAGGTGTGAAGGACCGAGACCCAAAGGGCCTCGTTTTGAAGGAAATCG,"Exon (Ylpm1-201/Ylpm1, exon 5 of 21)",12,84996321,85070492,74172,1,Ylpm1-207,32483,Ylpm1-207;Ylpm1-201;Ylpm1-202;Ylpm1-203,Ylpm1;Ylpm1;Ylpm1;Ylpm1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,13,56531,ENSMUSG00000021244,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1912,cg19088294,0.00000323,0.00000655,0.492406741,0.622780381,gain,ns,-0.0000164,0.0000111,-1.471567198,0.142152187,neg,ns,-0.008651105,0.003261948,-2.652128208,0.00841015,neg,ns,2.075196262,0.0000398,0.000112178,0.354958813,0.722861815,pos,ns,0.738339853,Vstm2a,Vstm2a_Exon,11,16263031,16263080,16263079,16263080,50,+,GAACACAAGGCCCAGGCCTATCTGAAAGTCAATGCCAACAGCCATGCCCG,"Exon (Vstm2a-201/Vstm2a, exon 4 of 5)",11,16257724,16284186,26463,1,Vstm2a-201,5307,Vstm2a-201;Vstm2a-202;Vstm2a-205;Vstm2a-204;Vstm2a-203,Vstm2a;Vstm2a;Vstm2a;Vstm2a;Vstm2a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,7,211739,ENSMUSG00000048834,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17188,cg10002997,-0.00000934,0.00000654,-1.427307563,0.154497756,loss,ns,0.0000164,0.0000111,1.471340856,0.142213325,pos,ns,0.00053358,0.003256728,0.163839254,0.869964455,pos,ns,0.060498491,-0.000130915,0.000111999,-1.168899185,0.2433423,neg,ns,0.870512308,Ano4,Ano4_threeUTR,10,89084620,89084669,89084620,89084621,50,-,CGAGAAGAAAACCCATCGTCAGTTACAGTTTGAACTAGCAAGGAAGGAAA,3' UTR,10,88948994,89257790,308797,2,Ano4-206,173121,Ano4-206;Ano4-204;Ano4-208;Ano4-210;Ano4-203;Ano4-205;Ano4-212;Ano4-202;Ano4-209,Ano4;Ano4;Ano4;Ano4;Ano4;Ano4;Ano4;Ano4;Ano4,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,8,9,320091,ENSMUSG00000035189,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15676,cg05677872,-0.000029,0.0000286,-1.012299278,0.312184428,loss,ns,-0.0000715,0.0000486,-1.471222776,0.142245229,neg,ns,-0.025675554,0.014247017,-1.802170502,0.072489888,neg,ns,1.139722574,0.000327977,0.000489954,0.669404314,0.503735847,pos,ns,0.722186324,Zdhhc21,Zdhhc21_Intergenic_downstream,4,82793235,82793284,82793283,82793284,50,+,TCAGCTGGATGTCTACAGGGTCCAATTTTCCTTCCAATTGCTCTTGCACG,Distal Intergenic,4,82838312,82850814,12503,2,Zdhhc21-203,57530,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,3,68268,ENSMUSG00000028403,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24376,cg05006526,0.0000735,0.00000792,9.278624706,3.06E-18,gain,yes,-0.0000198,0.0000135,-1.471106369,0.142276686,neg,ns,0.016498499,0.00394416,4.183019995,0.0000375,pos,ns,4.426072713,-0.000534591,0.000135639,-3.941265523,0.000100218,neg,ns,0.112749353,Chd4,Chd4_Promoter,6,125089205,125089254,125089205,125089206,50,-,CGACCAGAGGCAAGAGTATTATGGGCTGGCAAGGCCTTCGGTGGCCAGAG,Promoter (6-7kb),6,125095981,125130591,34611,1,Chd4-201,-6776,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,4,15,107932,ENSMUSG00000063870,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
12594,cg09918038,0.0000568,0.0000117,4.859523136,0.0000019,gain,ns,0.0000292,0.0000199,1.471103388,0.142277491,pos,ns,0.009789757,0.005816894,1.6829869,0.093384412,pos,ns,1.02972561,-0.000560465,0.000200043,-2.801727215,0.00540266,neg,ns,0.647483797,Scn2a,Scn2a_Exon,2,65670529,65670578,65670577,65670578,50,-,GACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACG,"Exon (Scn2a-204/Scn2a, exon 2 of 11)",2,65620771,65690175,69405,1,Scn2a-204,49758,Scn2a-204;Scn2a-201;Scn2a-209;Scn2a-205;Scn2a-202,Scn2a;Scn2a;Scn2a;Scn2a;Scn2a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,5,110876,ENSMUSG00000075318,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23132,cg21148230,0.000119213,0.0000176,6.778885345,6.12E-11,gain,yes,-0.0000439,0.0000299,-1.470713899,0.142382782,neg,ns,0.028702883,0.008752666,3.279330286,0.001158935,pos,ns,2.935941024,-0.000864736,0.000301003,-2.872842446,0.004348659,neg,ns,0.362665321,Rnf220,Rnf220_Intron,4,117317622,117317671,117317622,117317623,50,+,CGGCTGAAATTGAATTGATAACTGCATCAACGTGCCAGATAACGCCTAAA,"Intron (Rnf220-201/Rnf220, intron 2 of 14)",4,117271463,117497052,225590,2,Rnf220-201,179381,Rnf220-201;Rnf220-202;Rnf220-207,Rnf220;Rnf220;Rnf220,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,4,117317524,117317713,190,*,190,13,0.478947368,1.193236715,0.068421053,3.62E-08,CpGisland,TRUE,U13,Hc-P
12457,cg05167704,-0.0000193,0.00000849,-2.278752372,0.02336162,loss,ns,0.0000212,0.0000144,1.470563693,0.142423404,pos,ns,-0.003249246,0.004226131,-0.768846393,0.442569853,neg,ns,0.354018172,0.00000691,0.000145336,0.047561128,0.962096638,pos,ns,0.740991693,Gm13577,Gm13577_Intergenic_downstream,2,64369913,64369962,64369913,64369914,50,+,CGGGCCTCTGGCTGTGCTCTGTAGCTGTGAAATAGAATCAAGATTCCATT,Distal Intergenic,2,64474745,64474949,205,2,Gm13577-201,104987,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,17,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21166,cg25873624,-0.00000462,0.00000374,-1.23519414,0.217693574,loss,ns,0.00000935,0.00000636,1.470416445,0.142463234,pos,ns,0.004646101,0.00186225,2.49488507,0.013119901,pos,ns,1.882069426,-0.000124722,0.000064,-1.947486095,0.052379076,neg,ns,0.928400708,Gm17304,Gm17304_Intron,5,106577597,106577646,106577597,106577598,50,+,CGTACTTGTCTGCCCAATTAGCTAGGACAATTATTAAAATTCAGAGGCCT,"Intron (Gm28039-201/Gm28039-201, intron 2 of 2)",5,106609098,106609201,104,1,Gm17304-201,-31452,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,35,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4873,cg17921707,-0.00000022,0.00000129,-0.169750971,0.865316708,loss,ns,-0.00000323,0.0000022,-1.470413805,0.142463949,neg,ns,-0.000885894,0.000644235,-1.375111422,0.170089873,neg,ns,0.769321543,0.0000115,0.0000222,0.518277268,0.60463454,pos,ns,0.974644531,Acap2,Acap2_Exon,16,31107602,31107651,31107602,31107603,50,-,CGCCTGGCCTCGTCGCTATTTACAGCAATCACTGGGGACATGCAAGTTAG,"Exon (Acap2-202/Acap2, exon 18 of 24)",16,31092412,31201245,108834,2,Acap2-204,93594,Acap2-204;Acap2-201;Acap2-203;Acap2-202;Acap2-206;Acap2-207,Acap2;Acap2;Acap2;Acap2;Acap2;Acap2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,4,78618,ENSMUSG00000049076,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2495,cg07588875,0.0000146,0.0000167,0.87081082,0.384531296,gain,ns,0.0000418,0.0000284,1.470287723,0.14249806,pos,ns,0.016955716,0.008327333,2.036152015,0.042584858,pos,ns,1.370744796,-0.000426218,0.000286376,-1.488315776,0.137684162,neg,ns,0.78055052,Spred2,Spred2_Exon,11,19998153,19998202,19998201,19998202,50,+,TATGACCAGAGATGACTCCAGCGGGGGATGGTTCCCACAGGAAGGAGGCG,"Exon (Spred2-202/Spred2, exon 2 of 7)",11,19924375,20024026,99652,1,Spred2-202,73778,Spred2-202;Spred2-201;Spred2-203,Spred2;Spred2;Spred2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,13,114716,ENSMUSG00000045671,conserved gene and region,11,19998072,19998386,315,*,315,19,0.523809524,0.886666667,0.06031746,9.62E-11,CpGisland,TRUE,NA,NRS
7859,cg06494562,0.00000589,0.00000248,2.375746382,0.018121102,gain,ns,-0.00000619,0.00000421,-1.470241174,0.142510656,neg,ns,0.001340775,0.001233686,1.086804311,0.277967617,pos,ns,0.556005797,-0.0000539,0.0000424,-1.269757166,0.205123464,neg,ns,0.931339059,Gtdc1,Gtdc1_threeUTR,2,44565200,44565249,44565200,44565201,50,-,CGAGGACATGTGTAACCATCATAACGTCTCTAGGAATCTGTATTTAATTT,3' UTR,2,44564412,44861622,297211,2,Gtdc1-203,296373,Gtdc1-203;Gtdc1-201;Gtdc1-207,Gtdc1;Gtdc1;Gtdc1,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,43,227835,ENSMUSG00000036890,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24004,cg01339203,-0.00000404,0.00000413,-0.979281578,0.328204478,loss,ns,-0.0000103,0.00000701,-1.470162414,0.142531969,neg,ns,0.00086093,0.002054357,0.419074966,0.675451573,pos,ns,0.170405782,-0.0000735,0.0000706,-1.040975238,0.298698212,neg,ns,0.929869015,Atxn2,Atxn2_Exon,5,121813512,121813561,121813560,121813561,50,+,TCTCGACAACAGCGCATTTCCCCTATATGACGCACCCTTCAGGTGAGGCG,"Exon (Atxn2-201/Atxn2, exon 24 of 25)",5,121711609,121814950,103342,1,Atxn2-201,101903,Atxn2-201;Atxn2-209;Atxn2-214;Atxn2-215;Atxn2-217;Atxn2-210;Atxn2-203;Atxn2-206;Atxn2-212;Atxn2-211;Atxn2-205;Atxn2-218;Sh2b3-205;Sh2b3-202;Sh2b3-208;Sh2b3-204;Sh2b3-201;Sh2b3-203,Atxn2;Atxn2;Atxn2;Atxn2;Atxn2;Atxn2;Atxn2;Atxn2;Atxn2;Atxn2;Atxn2;Atxn2;Sh2b3;Sh2b3;Sh2b3;Sh2b3;Sh2b3;Sh2b3,0;0;0;11766;11401;0;0;0;2848;2547;0;0;23264;23298;15180;22543;23289;23256,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,16,20239,ENSMUSG00000042605,conserved gene but different region,5,121813431,121813604,174,*,174,15,0.632183908,0.881458967,0.086206897,8.65E-11,CpGisland,TRUE,U10,Tr-S
16911,cg13231428,-0.00000101,0.000003,-0.335580895,0.737413927,loss,ns,-0.00000748,0.00000509,-1.46998592,0.14257974,neg,ns,-0.003811864,0.001490872,-2.556800766,0.011040117,neg,ns,1.957026312,0.0000461,0.0000513,0.898573942,0.369577038,pos,ns,0.939098049,Ppm1e,Ppm1e_Exon,11,87244396,87244445,87244444,87244445,50,-,TCTTTCACCCAGCTGCAGCAAATCTCGTGTAGTTTGCTGAAGACAGAACG,"Exon (Ppm1e-201/Ppm1e, exon 3 of 7)",11,87226906,87359023,132118,2,Ppm1e-201,114578,Ppm1e-201;Ppm1e-202,Ppm1e;Ppm1e,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,320472,ENSMUSG00000046442,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17394,cg20480616,0.0000314,0.00000729,4.304080209,0.0000225,gain,ns,0.0000182,0.0000124,1.469867623,0.142611765,pos,ns,-0.003197779,0.003627333,-0.881578543,0.378687776,neg,ns,0.421718714,0.000057,0.000124744,0.456713922,0.648196526,pos,ns,0.773791235,Anks1b,Anks1b_Exon,10,90033221,90033270,90033221,90033222,50,+,CGAGGCCCCAATGTGAACTGCACAGACAGTTCGGGTTACACTGCTTTACA,"Exon (Anks1b-233/Anks1b, exon 2 of 26)",10,89873509,90970219,1096711,1,Anks1b-233,159712,Anks1b-233;Anks1b-223;Anks1b-222;Anks1b-203;Anks1b-226,Anks1b;Anks1b;Anks1b;Anks1b;Anks1b,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,14,77531,ENSMUSG00000058589,conserved gene and region,10,90033127,90033316,190,*,190,12,0.521052632,0.931372549,0.063157895,0.000000338,CpGisland,TRUE,U15,NS
20435,cg16724739,0.00000753,0.00000248,3.038704424,0.002578203,gain,ns,-0.00000618,0.00000421,-1.469621408,0.142678439,neg,ns,-0.001443941,0.001232747,-1.171319133,0.242370034,neg,ns,0.615521077,0.0000138,0.0000424,0.326569582,0.744213824,pos,ns,0.065227705,Hoxc4,Hoxc4_threeUTR,15,103035673,103035722,103035673,103035674,50,-,CGAGGACAGCCTATACCCGGCAGCAAGTCCTGGAATTAGAGAAAGAGTTT,3' UTR,15,103018934,103036405,17472,1,Hoxc4-202,16739,Hoxc4-202;Hoxc4-201,Hoxc4;Hoxc4,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,17,91,15423,ENSMUSG00000075394,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
13018,cg10873245,-0.00000308,0.00000369,-0.835144078,0.404279756,loss,ns,-0.0000092,0.00000626,-1.469542455,0.142699824,neg,ns,0.000655783,0.001834949,0.357384948,0.721046824,pos,ns,0.142036532,-0.0000845,0.0000631,-1.33849895,0.181714665,neg,ns,0.896758153,Rora,Rora_Intron,9,69197435,69197484,69197435,69197436,50,+,CGGTGCATAATTGAGCTCATGATGACTGAGAGATTGACAGTGCAGGAGAC,"Intron (Rora-201/Rora, intron 2 of 10)",9,68653786,69388246,734461,1,Rora-201,543649,Rora-201;Rora-206;Rora-203,Rora;Rora;Rora,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,19,19883,ENSMUSG00000032238,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16565,cg20539383,-0.00000306,0.00000175,-1.751059933,0.080924642,loss,ns,0.00000437,0.00000297,1.469371617,0.142746105,pos,ns,0.001233772,0.000870889,1.416681528,0.157580168,pos,ns,0.802498441,0.0000109,0.0000299,0.364885213,0.715445894,pos,ns,0.046787838,Fos,Fos_Promoter,12,85473566,85473615,85473614,85473615,50,+,CCTTACACAGGATGTCCATATTAGGACATCTGCGTCAGCAGGTTTCCACG,Promoter (<=1kb),12,85473890,85477273,3384,1,Fos-201,-275,Fos-201;Fos-203;Fos-204;Fos-202,Fos;Fos;Fos;Fos,0;-1076;-1076;-1296,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,5,14281,ENSMUSG00000021250,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
9024,cg25426731,-0.0000128,0.00000298,-4.287100891,0.0000242,loss,ns,0.00000744,0.00000506,1.469276906,0.142771768,pos,ns,0.003544866,0.001483801,2.389044636,0.01748997,pos,ns,1.757210932,-0.0000842,0.000051,-1.649364181,0.100085955,neg,ns,0.937542243,Gm18761,Gm18761_Intron,14,46567348,46567397,46567348,46567349,50,+,CGTGTTTGGCAGGTTCAGAAACACTTTATAGTCAATTTTAAATGAAGGTT,"Intron (E130120K24Rik-201/E130120K24Rik-201, intron 1 of 1)",14,46607552,46608952,1401,1,Gm18761-201,-40155,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,6,100417681,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5353,cg08120696,-0.0000475,0.0000152,-3.132458245,0.001899012,loss,ns,0.0000379,0.0000258,1.469215096,0.142788518,pos,ns,0.031819003,0.007553352,4.212567012,0.0000331,pos,ns,4.479659543,-0.000593429,0.000259759,-2.284536297,0.02301557,neg,ns,0.906824672,Fam53a,Fam53a_Intergenic_downstream,5,33575500,33575549,33575500,33575501,50,-,CGGAAAATTTATATTAAAAGTCTCTGTTTGCCTAAATGAGTTCCCTGTGC,Distal Intergenic,5,33600356,33628912,28557,2,Fam53a-203,53412,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,13,13,74504,ENSMUSG00000037339,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
678,cg13435603,-0.00000299,0.00000154,-1.939462601,0.053352043,loss,ns,-0.00000384,0.00000262,-1.469143481,0.142807927,neg,ns,-0.000205017,0.000766742,-0.267386859,0.789349119,neg,ns,0.102730871,0.0000254,0.0000264,0.963355957,0.33611978,pos,ns,0.965781305,Flnb,Flnb_Exon,14,7909669,7909718,7909717,7909718,50,+,TTGCAGAGACAACAAGGATGGCAGCTGCAGTGCTGAGTACATTCCTTTCG,"Exon (Flnb-201/Flnb, exon 24 of 46)",14,7817957,7951588,133632,1,Flnb-201,91712,Flnb-201,Flnb,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,286940,ENSMUSG00000025278,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15781,cg03734571,-0.0000234,0.00000369,-6.344800589,7.88E-10,loss,yes,-0.00000921,0.00000627,-1.468888788,0.14287697,neg,ns,-0.004757749,0.001836386,-2.590821195,0.01002734,neg,ns,1.998814274,-0.000045,0.0000632,-0.713230149,0.476239913,neg,ns,0.943082041,Dpf3,Dpf3_Intron,12,83380531,83380580,83380579,83380580,50,-,GCCTAAGCAAGACAGAATTTATATTGAACCTGGCCATGATTTCTGAGCCG,"Intron (Dpf3-207/Dpf3, intron 1 of 10)",12,83213751,83487716,273966,2,Dpf3-207,107136,Dpf3-207;Dpf3-206;Dpf3-205,Dpf3;Dpf3;Dpf3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,16,70127,ENSMUSG00000021221,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23043,cg20842326,0.00011706,0.0000117,10.03782516,1.03E-20,gain,yes,-0.0000291,0.0000198,-1.468788383,0.142904195,neg,ns,0.021294569,0.005804256,3.668785257,0.000286783,pos,ns,3.542447181,-0.000425836,0.000199608,-2.133364179,0.033679826,neg,ns,0.12558879,Ptprn2,Ptprn2_Intron,12,117160512,117160561,117160512,117160513,50,+,CGAAGGCAAAAGGAGGCTAATTAATGACCAGCTTTTCCAGTCAAGACCGG,"Intron (Ptprn2-204/Ptprn2, intron 12 of 22)",12,116485729,117276849,791121,1,Ptprn2-204,674783,Ptprn2-204;Ptprn2-201,Ptprn2;Ptprn2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,5,19276,ENSMUSG00000056553,conserved gene and region,12,117160424,117160513,90,*,90,12,0.6,1.62406015,0.133333333,4.94E-11,CpGisland,TRUE,U13,Hc-P
27416,cg11130897,-0.00000159,0.00000298,-0.53574338,0.592520076,loss,ns,-0.00000743,0.00000506,-1.468768588,0.142909563,neg,ns,-0.001999953,0.00148133,-1.350106192,0.177966829,neg,ns,0.749660937,-0.0000308,0.0000509,-0.605442625,0.545327914,neg,ns,0.894596253,Fam78b,Fam78b_Exon,1,167078898,167078947,167078946,167078947,50,-,GCCCGGCTGGTGGGCAGGACTCAGCAGGAGCAGCCCCGGATCCTGAGCCG,"Exon (Fam78b-205/Fam78b, exon 2 of 3)",1,167001417,167091302,89886,1,Fam78b-205,77481,Fam78b-205;Fam78b-206;Fam78b-204;Fam78b-202;Fam78b-201;Fam78b-203,Fam78b;Fam78b;Fam78b;Fam78b;Fam78b;Fam78b,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,9,226610,ENSMUSG00000060568,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5619,cg17882807,-0.0000604,0.0000129,-4.668838729,0.00000452,loss,ns,0.0000323,0.000022,1.468686036,0.142931951,pos,ns,-0.005360291,0.006436845,-0.832751229,0.405626139,neg,ns,0.391874066,0.0002329,0.000221363,1.052120667,0.293563609,pos,ns,0.85307707,Pbx3,Pbx3_Intron,2,34359916,34359965,34359916,34359917,50,-,CGGTCCACAAACTGCTCCTAGCTACGGATGAGAGGGCCACAAAAACACTT,"Intron (Pbx3-202/Pbx3, intron 2 of 7)",2,34171457,34372038,200582,2,Pbx3-202,12073,Pbx3-202;Pbx3-201;Pbx3-206;Pbx3-207;Pbx3-209;Pbx3-204;Pbx3-205;Pbx3-203,Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,82,18516,ENSMUSG00000038718,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16081,cg14711273,0.0000749,0.0000192,3.906886628,0.000114817,gain,ns,-0.0000478,0.0000326,-1.468673335,0.142935395,neg,ns,0.021024526,0.009544561,2.20277561,0.028346181,pos,ns,1.547505438,-0.000488575,0.000328237,-1.488484602,0.137639685,neg,ns,0.313296848,Thada,Thada_Intron,17,84366410,84366459,84366410,84366411,50,-,CGTGCAGTATAAAAGAATGTTTTTTCAAGTCAGTGAACTTAAGCTATTTT,"Intron (Thada-201/Thada, intron 26 of 37)",17,84190076,84466116,276041,2,Thada-201,99657,Thada-201;Thada-205;Thada-206,Thada;Thada;Thada,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,3,240174,ENSMUSG00000024251,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5240,cg14548925,-0.00000458,0.00000143,-3.213860892,0.001447539,loss,ns,0.00000356,0.00000242,1.468578944,0.142960998,pos,ns,0.001626154,0.000710031,2.290259348,0.022677574,pos,ns,1.644403412,-0.0000465,0.0000244,-1.904894103,0.057719108,neg,ns,0.047890466,Atxn7l1,Atxn7l1_fiveUTR,12,33147782,33147831,33147782,33147783,50,-,CGAAGGAACAGGGAAAAAGCAACAAGAAGGAAGAGCAATGGCGACACTGG,Promoter (<=1kb),12,33147789,33373045,225257,1,Atxn7l1-204,0,Atxn7l1-201;Atxn7l1-203;Atxn7l1-212;Atxn7l1-206;Atxn7l1-204;Atxn7l1-208,Atxn7l1;Atxn7l1;Atxn7l1;Atxn7l1;Atxn7l1;Atxn7l1,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,24,380753,ENSMUSG00000020564,conserved gene but different region,12,33147399,33147783,385,*,385,47,0.711688312,0.979166667,0.122077922,1.93E-40,CpGisland,TRUE,U2,Pr-W
552,cg02153806,0.0000578,0.0000084,6.877001211,3.38E-11,gain,yes,-0.0000209,0.0000143,-1.468421374,0.143003744,neg,ns,0.005289747,0.004179653,1.265594923,0.20660851,pos,ns,0.684851795,-0.000169881,0.000143738,-1.181882008,0.238158326,neg,ns,0.213973917,Dlx6,Dlx6_Exon,6,6869356,6869405,6869404,6869405,50,+,GTCTTCAGAATGGTTTAAAACCGATCAGTCTTGTCATTTTCTAGCATTCG,"Exon (Dlx6os1-201/Dlx6os1-201, exon 2 of 3)",6,6863798,6865430,1633,1,Dlx6-204,5558,Dlx6-203;Dlx6-202;Dlx6-201;Dlx6-204,Dlx6;Dlx6;Dlx6;Dlx6,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,36,13396,ENSMUSG00000029754,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
14373,cg06810447,-0.00000637,0.000004,-1.592992729,0.112180907,loss,ns,0.00000998,0.00000679,1.468200059,0.143063801,pos,ns,0.004389801,0.001990644,2.205216113,0.028172778,pos,ns,1.550170331,-0.0000312,0.0000685,-0.455136586,0.649329567,neg,ns,0.953358108,Speg,Speg_Exon,1,75385075,75385124,75385123,75385124,50,+,CTGGGGGTCAGAGGATAGCCTTTCCGTGGCCAGTGACCTGTACGGCAGCG,"Exon (Speg-201/Speg, exon 3 of 41)",1,75375297,75432320,57024,1,Speg-201,9778,Speg-201;Speg-214;Speg-205;Speg-215;Speg-208;Speg-213;Speg-207;Speg-210;Speg-209;Speg-211,Speg;Speg;Speg;Speg;Speg;Speg;Speg;Speg;Speg;Speg,0;0;0;0;0;0;0;0;-388;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,9,11790,ENSMUSG00000026207,conserved gene and region,1,75384919,75385180,262,*,262,21,0.675572519,0.714545455,0.080152672,2.82E-14,CpGisland,TRUE,U13,Hc-P
13386,cg27236629,0.000304752,0.0000188,16.2331335,2.57E-43,gain,yes,-0.0000468,0.0000319,-1.468147587,0.143078043,neg,ns,-0.010019398,0.009343745,-1.072310789,0.284414518,neg,ns,0.546048238,0.000441865,0.000321331,1.375110152,0.170090266,pos,ns,0.444702711,Nr2f2,Nr2f2_Exon,7,70357826,70357875,70357874,70357875,50,-,TGAGCTTCTCCACTTGCTCTTGGAAGATCCGTATGTGGTCCATAAAGGCG,"Exon (Nr2f2-201/Nr2f2, exon 2 of 3)",7,70351944,70360593,8650,2,Nr2f2-201,2718,Nr2f2-201;Nr2f2-203;Nr2f2-202;Nr2f2-205;Nr2f2-204;Nr2f2-206,Nr2f2;Nr2f2;Nr2f2;Nr2f2;Nr2f2;Nr2f2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,24,69,11819,ENSMUSG00000030551,conserved gene and region,7,70357855,70358250,396,*,396,31,0.626262626,0.821961835,0.078282828,1.66E-20,CpGisland,TRUE,NA,NRS
12175,cg15383869,0.000000858,0.00000412,0.208440235,0.835022128,gain,ns,0.0000103,0.000007,1.468132687,0.143082087,pos,ns,0.005029913,0.002049672,2.454008773,0.014677145,pos,ns,1.833358407,-0.000153035,0.0000705,-2.171076635,0.030683777,neg,ns,0.919296049,Map2k5,Map2k5_Intron,9,63217474,63217523,63217522,63217523,50,+,ATGTGTTAACACAATTTACATAATGAAAATACACAAATGTTAATAGCTCG,"Intron (Map2k5-201/Map2k5, intron 17 of 21)",9,63163768,63377902,214135,2,Map2k5-201,160379,Map2k5-201;Map2k5-202,Map2k5;Map2k5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,34,37,23938,ENSMUSG00000058444,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3491,cg16884658,0.000012,0.00000373,3.223479791,0.001401327,gain,ns,0.00000929,0.00000633,1.468130404,0.143082707,pos,ns,0.003712744,0.001854481,2.002039718,0.046151367,pos,ns,1.335815427,-0.000015,0.0000638,-0.234928835,0.814419071,neg,ns,0.936082001,Bcl11a,Bcl11a_Exon,11,24164881,24164930,24164881,24164882,50,+,CGACACTTGTGAGTACTGTGGGAAAGTCTTCAAGAACTGTAGCAATCTCA,"Exon (Bcl11a-201/Bcl11a, exon 4 of 5)",11,24078056,24173194,95139,1,Bcl11a-201,86825,Bcl11a-201;Bcl11a-203;Bcl11a-202;Bcl11a-204;Bcl11a-206,Bcl11a;Bcl11a;Bcl11a;Bcl11a;Bcl11a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,51,98,14025,ENSMUSG00000000861,conserved gene but different region,11,24164541,24164882,342,*,342,25,0.628654971,0.74025974,0.073099415,6.44E-16,CpGisland,TRUE,NA,NRS
16367,cg11642756,0.0000405,0.0000146,2.773004313,0.005890446,gain,ns,-0.0000364,0.0000248,-1.467983169,0.143122676,neg,ns,0.008927221,0.00727192,1.227629134,0.220517583,pos,ns,0.656556776,-0.000415312,0.000250081,-1.660709866,0.097782772,neg,ns,0.200455931,Nfix,Nfix_Intron,8,84774583,84774632,84774583,84774584,50,+,CGGCAGTTGGAGACCAAAAACAATTTGCCCAATCGACAAGTTCACGTCTA,"Intron (Nfix-201/Nfix, intron 1 of 8)",8,84708614,84800140,91527,2,Nfix-201,25508,Nfix-204;Nfix-201;Nfix-202;Nfix-203;Nfix-205,Nfix;Nfix;Nfix;Nfix;Nfix,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,49,18032,ENSMUSG00000001911,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
25982,cg05313078,0.00000435,0.00000331,1.312795937,0.190222739,gain,ns,-0.00000826,0.00000563,-1.467873906,0.143152342,neg,ns,-0.000605141,0.00164818,-0.367156802,0.713752568,neg,ns,0.146452316,-0.000017,0.0000567,-0.299864201,0.764481708,neg,ns,0.938439535,Pkn2,Pkn2_threeUTR,3,142793884,142793933,142793884,142793885,50,-,CGAGGTGGAGTCAGAATAGGTGCTTCTGAGGTAAATTCATCATCAAAATT,3' UTR,3,142790902,142882004,91103,2,Pkn2-201,88071,Pkn2-201;Pkn2-207;Pkn2-206;Pkn2-210,Pkn2;Pkn2;Pkn2;Pkn2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,4,109333,ENSMUSG00000004591,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2372,cg15044168,0.00000559,0.00000468,1.193353941,0.233643262,gain,ns,-0.0000117,0.00000796,-1.467679031,0.143205265,neg,ns,-0.006814958,0.002331088,-2.923509886,0.003715952,neg,ns,2.429929919,0.000185484,0.0000802,2.313749226,0.021335289,pos,ns,0.061506563,Tfap2b,Tfap2b_fiveUTR,1,19212391,19212440,19212439,19212440,50,+,TTCCAGATGTTAGTCCACACCTATTCATCCATGGTGAGTTTGGATTCACG,5' UTR,1,19208914,19238576,29663,1,Tfap2b-201,3477,Tfap2b-201;Tfap2b-204;Tfap2b-202;Tfap2b-205;Tfap2b-203,Tfap2b;Tfap2b;Tfap2b;Tfap2b;Tfap2b,0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,40,21419,ENSMUSG00000025927,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
438,cg04725401,-0.000000343,0.00000181,-0.188729521,0.850428306,loss,ns,-0.00000453,0.00000308,-1.467617362,0.143222016,neg,ns,0.000183417,0.000903325,0.203046199,0.839232129,pos,ns,0.076117898,-0.0000208,0.0000311,-0.670329618,0.503146743,neg,ns,0.954358594,Dpf2,Dpf2_Exon,19,5903747,5903796,5903747,5903748,50,+,CGAGGTATGCTTTTGTTTGAAACTATCTGAAAGACAGAAAGAAAAGTCAT,"Exon (Dpf2-202/Dpf2, exon 7 of 12)",19,5896516,5912871,16356,2,Dpf2-205,9075,Dpf2-205;Dpf2-201;Dpf2-210;Dpf2-202;Dpf2-204;Dpf2-206;Dpf2-203;Dpf2-207;Dpf2-208,Dpf2;Dpf2;Dpf2;Dpf2;Dpf2;Dpf2;Dpf2;Dpf2;Dpf2,0;0;0;0;-415;-1306;8981;8973;9214,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,19708,ENSMUSG00000024826,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18437,cg01556430,-0.0000118,0.00000701,-1.685923019,0.092816794,loss,ns,-0.0000175,0.0000119,-1.467498958,0.143254182,neg,ns,0.003982468,0.003487338,1.141979336,0.254343904,pos,ns,0.594578667,-0.00042326,0.000119929,-3.529248575,0.000479883,neg,ns,0.715457076,Ndrg4,Ndrg4_threeUTR,8,95709142,95709191,95709190,95709191,50,-,GGTGAACCAGGCCAACCTGCAGCTCTTCTGGAACATGTACAACAGGTGCG,3' UTR,8,95676980,95709144,32165,1,Ndrg4-207,32162,Ndrg4-207;Ndrg4-201;Ndrg4-210;Ndrg4-202;Ndrg4-203;Ndrg4-211;Ndrg4-206;Ndrg4-205;Ndrg4-209;Ndrg4-204;Ndrg4-208,Ndrg4;Ndrg4;Ndrg4;Ndrg4;Ndrg4;Ndrg4;Ndrg4;Ndrg4;Ndrg4;Ndrg4;Ndrg4,0;0;0;0;0;0;0;0;-716;-1275;-2706,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,2,234593,ENSMUSG00000036564,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15161,cg07711068,0.000228167,0.0000109,20.90495344,3.68E-61,gain,yes,-0.0000272,0.0000185,-1.467351,0.143294384,neg,ns,0.008080521,0.005432259,1.487506473,0.137897529,pos,ns,0.860443517,-0.000067,0.000186815,-0.358422122,0.720271395,neg,ns,0.505018011,Polg,Polg_Exon,7,79464821,79464870,79464869,79464870,50,+,GGCTCTGCTTCTGGGCCAGGAGGCGGAAGTGCTGGTCCAGGTTGTCCCCG,"Exon (Polg-201/Polg, exon 2 of 23)",7,79446231,79466362,20132,2,Polg-201,1492,Polg-201;Polg-203;Polg-213;Polg-205;Polg-210;Polg-216;Polg-202,Polg;Polg;Polg;Polg;Polg;Polg;Polg,0;0;0;0;-3017;0;1200,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,16,18975,ENSMUSG00000039176,conserved gene and region,7,79464668,79465308,641,*,641,56,0.691107644,0.732481737,0.087363495,2.94E-39,CpGisland,TRUE,U4,Pr-F
6612,cg03196097,0.0000229,0.00000474,4.822100812,0.00000223,gain,ns,0.0000118,0.00000805,1.46656233,0.143508824,pos,ns,0.004703558,0.002358882,1.993977335,0.047030293,pos,ns,1.327622313,-0.0000437,0.0000811,-0.538176326,0.590841503,neg,ns,0.096448162,Msx1,Msx1_Promoter,5,37828083,37828132,37828131,37828132,50,-,CAAACAGTCCTCTTTAATAGAATGAATGTGCTATGAAAACCGATTACCCG,Promoter (3-4kb),5,37820485,37824583,4099,2,Msx1-201,-3549,Msx1-201;Msx1-202,Msx1;Msx1,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,8,14,17701,ENSMUSG00000048450,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
5862,cg19934636,-0.000000292,0.00000112,-0.260685336,0.794508256,loss,ns,0.00000279,0.0000019,1.466398233,0.143553473,pos,ns,0.001122341,0.000556745,2.015898842,0.044672987,pos,ns,1.349955004,-0.00000855,0.0000191,-0.446483952,0.655559429,neg,ns,0.963364475,Cnot4,Cnot4_Exon,6,35052946,35052995,35052946,35052947,50,+,CGAAAATTGTCTGAGAATAACGACTGTGACTCTGTTACTGCCCCTTCAAA,"Exon (Cnot4-206/Cnot4, exon 9 of 11)",6,35022065,35133625,111561,2,Cnot4-206,80630,Cnot4-206;Cnot4-202;Cnot4-203;Cnot4-201;Cnot4-207;Cnot4-204;Cnot4-208,Cnot4;Cnot4;Cnot4;Cnot4;Cnot4;Cnot4;Cnot4,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,10,53621,ENSMUSG00000038784,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13128,cg09756913,-0.00000444,0.00000218,-2.037306885,0.042468331,loss,ns,0.00000543,0.0000037,1.466397788,0.143553594,pos,ns,0.001628107,0.001084546,1.501187987,0.134324785,pos,ns,0.871843847,-0.0000923,0.0000373,-2.475823931,0.013826805,neg,ns,0.948319381,Ikzf2,Ikzf2_Exon,1,69542273,69542322,69542273,69542274,50,+,CGTGAGCTTCTCTATGACAGCAGGTCTCTCAAAAGGCACCAGAGAAATAT,"Exon (Gm29114-201/Gm29114-201, exon 3 of 4)",1,69531214,69685821,154608,2,Ikzf2-201,143499,Ikzf2-201;Ikzf2-207;Ikzf2-202;Ikzf2-204;Ikzf2-208;Ikzf2-209,Ikzf2;Ikzf2;Ikzf2;Ikzf2;Ikzf2;Ikzf2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,14,22779,ENSMUSG00000025997,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6491,cg16089221,0.00000511,0.00000621,0.822955168,0.411166086,gain,ns,-0.0000155,0.0000106,-1.466374455,0.143559943,neg,ns,0.009118742,0.003092811,2.948367034,0.003437362,pos,ns,2.463774748,-0.000489985,0.000106362,-4.606791268,0.00000598,neg,ns,0.857016213,Msantd2,Msantd2_threeUTR,9,37513572,37513621,37513620,37513621,50,+,TATTTGCCCTTTTCTGAACTCTACAATTTCCCTCTCTTGTAGCTGGTTCG,3' UTR,9,37489021,37524150,35130,1,Msantd2-209,24551,Msantd2-209;Msantd2-204;Msantd2-210;Msantd2-201;Msantd2-202;Msantd2-208;Msantd2-203;Msantd2-206;Msantd2-207,Msantd2;Msantd2;Msantd2;Msantd2;Msantd2;Msantd2;Msantd2;Msantd2;Msantd2,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,8,235184,ENSMUSG00000042138,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3031,cg20555507,-0.00000445,0.00000577,-0.771456117,0.441024261,loss,ns,-0.0000144,0.00000981,-1.466367633,0.1435618,neg,ns,0.002068006,0.002872796,0.719858211,0.472154671,pos,ns,0.32591571,-0.0000672,0.0000988,-0.680502626,0.496694184,neg,ns,0.088414727,Trpm3,Trpm3_Exon,19,22448100,22448149,22448100,22448101,50,-,CGAAGCAGCAGGCAGTGTGCCTCCATTCAGCCACATTTGGTATGCATGAG,"Exon (Gm27151-201/Gm27151-201, exon 1 of 2)",19,22139046,22995410,856365,1,Trpm3-218,309054,Trpm3-218;Trpm3-202;Trpm3-203;Trpm3-213;Trpm3-222;Trpm3-207;Trpm3-209;Trpm3-214;Trpm3-216;Trpm3-223;Trpm3-224;Trpm3-201,Trpm3;Trpm3;Trpm3;Trpm3;Trpm3;Trpm3;Trpm3;Trpm3;Trpm3;Trpm3;Trpm3;Trpm3,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,12,226025,ENSMUSG00000052387,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15304,cg16593370,-0.00000582,0.00000658,-0.885109422,0.376783629,loss,ns,0.0000164,0.0000112,1.46623767,0.143597171,pos,ns,-0.000699031,0.003273384,-0.213549974,0.831038393,neg,ns,0.080378912,-0.0000858,0.000112571,-0.762625471,0.446266684,neg,ns,0.493871885,Rhot1,Rhot1_Exon,11,80265785,80265834,80265785,80265786,50,+,CGAGCAAGTTTTGGTGCTACTGTTTTTGCAGTTTTGGGCTTTGCTATGTA,"Exon (Rhot1-203/Rhot1, exon 21 of 21)",11,80209019,80266812,57794,1,Rhot1-203,56766,Rhot1-203;Rhot1-202;Rhot1-204;Rhot1-201;Rhot1-206;Rhot1-207;Rhot1-211;Rhot1-210,Rhot1;Rhot1;Rhot1;Rhot1;Rhot1;Rhot1;Rhot1;Rhot1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,6,59040,ENSMUSG00000017686,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4746,cg18599143,-0.0000117,0.00000372,-3.158902661,0.001739773,loss,ns,-0.00000925,0.00000631,-1.46610626,0.143632942,neg,ns,-0.006255435,0.001849339,-3.382525704,0.000810365,neg,ns,3.091319525,0.000103624,0.0000636,1.629348245,0.104255012,pos,ns,0.950090328,Mecom,Mecom_Intron,3,30412530,30412579,30412578,30412579,50,-,ACTGGAAAGACATCTACAGAACACCCAAAAAGCATAATCTTTCCGAAGCG,"Intron (Mecom-212/Mecom, intron 1 of 15)",3,29951299,30509733,558435,2,Mecom-212,97154,Mecom-212;Mecom-213;Mecom-207;Mecom-208;Mecom-211;Mecom-209,Mecom;Mecom;Mecom;Mecom;Mecom;Mecom,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,80,14013,ENSMUSG00000027684,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16595,cg14274187,0.0000184,0.0000124,1.482281182,0.139281307,gain,ns,-0.0000309,0.0000211,-1.466037035,0.143651789,neg,ns,0.002522744,0.006171393,0.408780244,0.682983187,pos,ns,0.165589987,-0.00000435,0.000212234,-0.02051745,0.983643791,neg,ns,0.477119718,Six3,Six3_Exon,17,85619427,85619476,85619475,85619476,50,-,GCTACTGTGTGTGAATCCATTCAACATATACACTTTTTAACACCAAACCG,"Exon (Gm28528-201/Gm28528-201, exon 2 of 2)",17,85613608,85625222,11615,1,Six3-202,5819,Six3-202;Six3-203;Six3-201,Six3;Six3;Six3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,24,20473,ENSMUSG00000038805,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
11079,cg22207842,0.0000676,0.00000713,9.472147883,7.32E-19,gain,yes,-0.0000178,0.0000121,-1.465938436,0.143678636,neg,ns,0.00734791,0.003550816,2.069358282,0.039340801,pos,ns,1.405156801,-0.000139977,0.000122112,-1.146294159,0.252557498,neg,ns,0.057538931,Nkx2-1,Nkx2-1_Exon,12,56534983,56535032,56535031,56535032,50,-,TTTCTTGTAGCTTTCCTCCAGGGGACTCAAGATGTCAGACACTGAGAACG,Promoter (<=1kb),12,56531958,56535106,3149,2,Nkx2-1-202,74,Nkx2-1-202;Nkx2-1-201,Nkx2-1;Nkx2-1,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,29,21869,ENSMUSG00000001496,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
11099,cg07625659,-0.00000419,0.00000481,-0.872213787,0.383766797,loss,ns,0.000012,0.00000816,1.465914089,0.143685266,pos,ns,-0.000962423,0.002391917,-0.402364809,0.687692865,neg,ns,0.162605482,-0.000101663,0.0000823,-1.235902715,0.217430407,neg,ns,0.928449568,Gm13527,Gm13527_Intergenic_upstream,2,56576858,56576907,56576858,56576859,50,-,CGATTTAAATCATGCACATAAAAAATGTAATCACAAATTTAGCATGGTGG,Distal Intergenic,2,57079748,57080438,691,1,Gm13527-201,-502890,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,13,13,227920,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9553,cg00528541,-0.0000462,0.0000156,-2.961617975,0.003296784,loss,ns,0.0000389,0.0000265,1.465867858,0.143697856,pos,ns,-0.009848404,0.007768244,-1.267777311,0.205828881,neg,ns,0.686493688,0.000225486,0.000267149,0.844045594,0.399294786,pos,ns,0.651680087,Enox2,Enox2_Intron,X,49273427,49273476,49273475,49273476,50,+,TGTATATTGTACCAGGAACATTGTGACACTCTTCAGGGAACTGTTTCACG,"Intron (Enox2-204/Enox2, intron 2 of 15)",20,49009707,49288212,278506,2,Enox2-204,14736,Enox2-204;Enox2-201;Enox2-203;Enox2-205;Enox2-202;Enox2-208;Enox2-206;Enox2-207,Enox2;Enox2;Enox2;Enox2;Enox2;Enox2;Enox2;Enox2,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,209224,ENSMUSG00000031109,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3504,cg05634856,-0.00000166,0.000002,-0.829530005,0.407442868,loss,ns,0.00000499,0.00000341,1.465832616,0.143707453,pos,ns,0.001573188,0.000997735,1.576759594,0.115870746,pos,ns,0.936026195,-0.0000362,0.0000343,-1.055763888,0.291898188,neg,ns,0.949668038,Gm11892,Gm11892_Intergenic_upstream,4,24218254,24218303,24218302,24218303,50,+,CTTAATTCATTCTTCAAGACAAGTACAAAATTTGTCACTGACATTTAGCG,Distal Intergenic,4,24238100,24239301,1202,1,Gm11892-201,-19797,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,16,16,664973,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5237,cg17331461,-3.23E-08,0.000000939,-0.034370242,0.972604033,loss,ns,-0.00000234,0.0000016,-1.465819421,0.143711047,neg,ns,0.000282295,0.000467573,0.603744513,0.54645504,pos,ns,0.262445564,-0.0000155,0.0000161,-0.966089639,0.334752388,neg,ns,0.015338316,Atxn7l1,Atxn7l1_fiveUTR,12,33147753,33147802,33147753,33147754,50,+,CGAATCCCGTGTCTCTCGGCTGCTGCTGCCGAAGGAACAGGGAAAAAGCA,Promoter (<=1kb),12,33147754,33373030,225277,1,Atxn7l1-212,0,Atxn7l1-201;Atxn7l1-203;Atxn7l1-212;Atxn7l1-206;Atxn7l1-204;Atxn7l1-208,Atxn7l1;Atxn7l1;Atxn7l1;Atxn7l1;Atxn7l1;Atxn7l1,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,24,380753,ENSMUSG00000020564,conserved gene but different region,12,33147399,33147783,385,*,385,47,0.711688312,0.979166667,0.122077922,1.93E-40,CpGisland,TRUE,U2,Pr-W
4813,cg15967125,0.00000114,0.00000576,0.198386512,0.842872707,gain,ns,-0.0000143,0.00000979,-1.465574352,0.143777804,neg,ns,0.00107099,0.002867742,0.373461149,0.709060517,pos,ns,0.149316697,-0.000122172,0.0000986,-1.238794745,0.216358686,neg,ns,0.926550063,Dnah8,Dnah8_threeUTR,17,30708482,30708531,30708482,30708483,50,-,CGTGATAATGAAATTCAAATGGACATGACTTTGGGACCAATTGAAGTAAG,3' UTR,17,30624354,30875264,250911,1,Dnah8-201,84128,Dnah8-201;Dnah8-210;Dnah8-206;Dnah8-208;Dnah8-205;Dnah8-211,Dnah8;Dnah8;Dnah8;Dnah8;Dnah8;Dnah8,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,1,13417,ENSMUSG00000033826,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25870,cg01685922,0.0000332,0.00000367,9.034457313,1.81E-17,gain,yes,-0.00000914,0.00000624,-1.465568259,0.143779464,neg,ns,0.004390198,0.001827733,2.401990204,0.01689426,pos,ns,1.772260821,-0.000186337,0.0000629,-2.96452649,0.003266641,neg,ns,0.071019122,Pax7,Pax7_Intron,4,139831591,139831640,139831639,139831640,50,-,TTCAAGAGCCTCTTTAGCGACCGGCACTCGGCTCTCCTCAGTATTCTGCG,"Intron (Pax7-201/Pax7, intron 1 of 8)",4,139737062,139833528,96467,2,Pax7-201,1888,Pax7-201;Pax7-202,Pax7;Pax7,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,27,18509,ENSMUSG00000028736,conserved gene and region,4,139831506,139832036,531,*,531,47,0.610169492,0.97230014,0.088512241,2.50E-33,CpGisland,TRUE,U13,Hc-P
5599,cg13771151,-0.00000329,0.00000356,-0.923551271,0.356438279,loss,ns,0.00000886,0.00000605,1.465505986,0.143796431,pos,ns,0.002518212,0.0017718,1.421272897,0.156242602,pos,ns,0.806200537,0.0000013,0.0000609,0.021314808,0.983008244,pos,ns,0.507081473,Dst,Dst_Exon,1,34301839,34301888,34301887,34301888,50,+,TATCCTGTGTCATTTTTTCTAGTTCATCATCATGGGAGTAAAATGTTACG,"Exon (Dst-211/Dst, exon 99 of 103)",1,33908225,34307592,399368,1,Dst-211,393614,Dst-211;Dst-202;Dst-203;Dst-201;Dst-215;Dst-204;Dst-212;Dst-208,Dst;Dst;Dst;Dst;Dst;Dst;Dst;Dst,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,4,13518,ENSMUSG00000026131,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26573,cg23287176,0.000139308,0.000015,9.30211791,2.57E-18,gain,yes,-0.0000373,0.0000254,-1.465467802,0.143806836,neg,ns,0.006506342,0.007453663,0.872905278,0.383390337,pos,ns,0.416358837,-0.0000769,0.000256331,-0.299807852,0.764524651,neg,ns,0.334625755,Casz1,Casz1_Intron,4,148922192,148922241,148922240,148922241,50,+,TCAGGTTTTAATACACAAAATTATTTCAGGAGCAGTGAATCGGAAAGTCG,"Intron (Casz1-201/Casz1, intron 4 of 15)",4,148804429,148945129,140701,1,Casz1-201,117763,Casz1-201;Casz1-202;Casz1-206,Casz1;Casz1;Casz1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,94,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9824,cg16471373,0.000029,0.00000633,4.584725398,0.0000066,gain,ns,0.0000158,0.0000108,1.46546283,0.143808191,pos,ns,0.010539392,0.003149425,3.346449607,0.000919259,pos,ns,3.036561962,-0.0000558,0.000108308,-0.515242481,0.606750798,neg,ns,0.57833496,Gm44402,Gm44402_Intergenic_downstream,6,50984591,50984640,50984639,50984640,50,+,TCATTAAGTCACAACCTGAAATGTGATCCTGCCCAGCTCCCAATCAGACG,Distal Intergenic,6,50967268,50967505,238,1,Gm44402-201,17323,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,9,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16399,cg26954891,0.00000128,0.00000309,0.415935804,0.677744768,gain,ns,0.00000769,0.00000525,1.465323665,0.143846116,pos,ns,0.004901553,0.001537576,3.187844419,0.001579695,pos,ns,2.801426884,-0.000156614,0.0000529,-2.961853479,0.003294334,neg,ns,0.922347153,Ggnbp2,Ggnbp2_Exon,11,84833023,84833072,84833071,84833072,50,+,GCCGTTGTCAACCAGCCACTACAAATGGGCCTCTTGTGATCATTTAACCG,"Exon (Ggnbp2-213/Ggnbp2, exon 14 of 14)",11,84832361,84870738,38378,2,Ggnbp2-213,37666,Dhrs11-201;Dhrs11-202;Ggnbp2-213;Ggnbp2-203;Ggnbp2-211;Ggnbp2-206;Ggnbp2-201;Ggnbp2-202;Ggnbp2-204;Ggnbp2-212;Ggnbp2-210,Dhrs11;Dhrs11;Ggnbp2;Ggnbp2;Ggnbp2;Ggnbp2;Ggnbp2;Ggnbp2;Ggnbp2;Ggnbp2;Ggnbp2,-4059;-4029;0;0;0;0;0;0;3396;0;4912,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,217039,ENSMUSG00000020530,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17909,cg20850964,-0.00000206,0.000000842,-2.443668491,0.015096146,loss,ns,0.0000021,0.00000143,1.465261481,0.143863065,pos,ns,0.000998645,0.00041906,2.383061934,0.017771471,pos,ns,1.750276619,-0.0000128,0.0000144,-0.887425351,0.375537915,neg,ns,0.033076443,Nup54,Nup54_Exon,5,92434214,92434263,92434262,92434263,50,+,GTATCTACCTGCACTTGCCAGACTGTTACCAAAATTGAACGGAGTCGCCG,Promoter (<=1kb),5,92415540,92435219,19680,2,Nup54-201,956,Nup54-201;Nup54-206;Nup54-202;Nup54-207;Nup54-205;Nup54-204,Nup54;Nup54;Nup54;Nup54;Nup54;Nup54,0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,269113,ENSMUSG00000034826,conserved gene and region,5,92434164,92434352,189,*,189,11,0.492063492,1.024137931,0.058201058,0.00000271,CpGisland,TRUE,NA,NRS
14950,cg17392875,0.0000165,0.00000837,1.968753443,0.049871983,gain,ns,0.0000208,0.0000142,1.465216437,0.143875343,pos,ns,0.008937879,0.004163395,2.146776865,0.03258664,pos,ns,1.486960418,-0.0000175,0.000143179,-0.122282485,0.902754536,neg,ns,0.313135447,Nr2f1,Nr2f1_fiveUTR,13,78197272,78197321,78197272,78197273,50,+,CGGTAAATGCCGTTGTAAATTGTAATTTGTATGCAGTATTTAAGCAGAGG,5' UTR,13,78188973,78199757,10785,2,Nr2f1-201,2436,Nr2f1-201;Nr2f1-205;Nr2f1-203;Nr2f1-202;Nr2f1-206,Nr2f1;Nr2f1;Nr2f1;Nr2f1;Nr2f1,0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,8,55,13865,ENSMUSG00000069171,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
5717,cg16762046,0.00000713,0.00000294,2.42160878,0.016025579,gain,ns,-0.00000732,0.000005,-1.465201213,0.143879493,neg,ns,-0.003460429,0.00146442,-2.363002519,0.01874464,neg,ns,1.727122893,0.0000368,0.0000504,0.730521868,0.465622977,pos,ns,0.869141021,Add1,Add1_Exon,5,34613545,34613594,34613545,34613546,50,+,CGTGTCAGTTGGAGAGAGCGTTGAGGAGGCCTTCTATTACATCCATAACC,"Exon (Add1-204/Add1, exon 8 of 16)",5,34573664,34632308,58645,1,Add1-204,39881,Add1-204;Add1-201;Add1-205;Add1-203;Add1-202;Add1-206;Add1-209;Add1-215,Add1;Add1;Add1;Add1;Add1;Add1;Add1;Add1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,6,11518,ENSMUSG00000029106,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24196,cg05889958,0.00000659,0.0000194,0.340329171,0.733839151,gain,ns,0.0000482,0.0000329,1.464964137,0.143944131,pos,ns,-0.010904011,0.009639857,-1.131138289,0.258871192,neg,ns,0.586916277,0.000366375,0.000331514,1.105157112,0.269948507,pos,ns,0.914353162,Pabpc4,Pabpc4_threeUTR,4,123289067,123289116,123289067,123289068,50,+,CGCAAAGTGTGAGTGTCCCAGTCCGGAGCAACAACCATCGCATGAGCCAG,3' UTR,4,123282825,123298925,16101,1,Pabpc4-204,6242,Pabpc4-207;Pabpc4-204;Pabpc4-203;Pabpc4-208;Pabpc4-202;Pabpc4-201,Pabpc4;Pabpc4;Pabpc4;Pabpc4;Pabpc4;Pabpc4,26716;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,5,230721,ENSMUSG00000011257,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9298,cg13577735,-0.00000813,0.00000187,-4.343658106,0.000019,loss,ns,0.00000466,0.00000318,1.464942462,0.143950042,pos,ns,-0.00081718,0.000931341,-0.877423671,0.38093604,neg,ns,0.419147938,0.0000673,0.000032,2.101250124,0.036426038,pos,ns,0.052163804,Nr4a3,Nr4a3_Promoter,4,48042825,48042874,48042873,48042874,50,-,AGCAGAGCAGCTGCTGCTGCACCCGTGATGCAAGTGCAGGATGAGCCCCG,Promoter (2-3kb),4,48045153,48086445,41293,1,Nr4a3-201,-2328,Nr4a3-201;Nr4a3-204,Nr4a3;Nr4a3,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,6,20,18124,ENSMUSG00000028341,mapped to different genes,4,48042873,48043491,619,*,619,94,0.731825525,1.139516666,0.151857835,6.25E-91,CpGisland,TRUE,U1,Pr-A
14841,cg00860225,0.0000558,0.0000051,10.94786681,8.43E-24,gain,yes,-0.0000127,0.00000866,-1.464779762,0.143994415,neg,ns,0.005528728,0.002536812,2.179399608,0.030054446,pos,ns,1.522091268,-0.0000658,0.0000872,-0.754437894,0.451159037,neg,ns,0.145989344,Sez6,Sez6_Intron,11,77948059,77948108,77948107,77948108,50,-,TGAAAGCCTTTTTTCATTTCGTCTAAATACTTTAAACAGGGCTCCCTCCG,"Intron (Sez6-202/Sez6, intron 1 of 16)",11,77930800,77979048,48249,1,Sez6-202,17259,Sez6-202;Sez6-207;Sez6-205;Sez6-201;Sez6-209;Sez6-204,Sez6;Sez6;Sez6;Sez6;Sez6;Sez6,0;0;0;0;0;-3197,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,9,20370,ENSMUSG00000000632,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5114,cg06613586,-0.0000282,0.00000751,-3.758898588,0.000203922,loss,ns,-0.0000187,0.0000128,-1.464452619,0.14408367,neg,ns,-0.006389717,0.003735998,-1.710310602,0.088208962,neg,ns,1.054487288,-0.0000895,0.000128481,-0.696350214,0.486731309,neg,ns,0.811309384,Ogdhl,Ogdhl_Exon,14,32335359,32335408,32335359,32335360,50,+,CGTGATCCGCAAGGACCTGGAGCAGATCTTCTGCCAGTTTGACCCCAAGC,"Exon (Ogdhl-201/Ogdhl, exon 9 of 24)",14,32322019,32347820,25802,1,Ogdhl-201,13340,Ogdhl-201;Ogdhl-203,Ogdhl;Ogdhl,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,239017,ENSMUSG00000021913,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2587,cg04093430,-0.0000277,0.00000666,-4.160434378,0.0000412,loss,ns,0.0000166,0.0000113,1.464403277,0.144097136,pos,ns,-0.003207716,0.00331439,-0.967815096,0.333891169,neg,ns,0.476395067,-0.0000584,0.000113982,-0.51226938,0.608827261,neg,ns,0.805067296,Magi2,Magi2_threeUTR,5,20661303,20661352,20661351,20661352,50,+,ACAAGCATGGGTCCCCATATTTCTACTTATTGGGCCACCCTAAAGACACG,3' UTR,5,19227036,20702919,1475884,1,Magi2-205,1434267,Magi2-205;Magi2-201;Magi2-206;Magi2-202;Magi2-203;Magi2-211,Magi2;Magi2;Magi2;Magi2;Magi2;Magi2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,1,50791,ENSMUSG00000040003,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2724,cg22791342,-0.00000743,0.00000612,-1.21401318,0.225666743,loss,ns,0.0000152,0.0000104,1.464294385,0.144126857,pos,ns,-0.001532871,0.003044174,-0.50354252,0.614940513,neg,ns,0.211166894,0.0000536,0.000104689,0.512314561,0.608795682,pos,ns,0.836123179,Kat6b,Kat6b_Exon,14,21624939,21624988,21624987,21624988,50,+,GCATCTGGGAAGGACTCAAGCAGCAGATTGGCTGTTACAGACCCCACTCG,"Exon (Kat6b-201/Kat6b, exon 7 of 17)",14,21499770,21672071,172302,1,Kat6b-206,125169,Kat6b-211;Kat6b-206;Kat6b-204;Kat6b-201;Kat6b-202;Kat6b-208;Kat6b-210;Kat6b-203;Kat6b-214;Kat6b-205;Kat6b-213,Kat6b;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,21,54169,ENSMUSG00000021767,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3861,cg13773311,0.0000147,0.00000619,2.373943628,0.018208185,gain,ns,0.0000154,0.0000105,1.464192112,0.144154775,pos,ns,0.002185974,0.00308327,0.708979165,0.478870241,pos,ns,0.319782151,0.0000313,0.000106033,0.295214456,0.768027681,pos,ns,0.144708766,Dmrt3,Dmrt3_Intron,19,25615921,25615970,25615921,25615922,50,-,CGGGTTTAAAAGATTACAGTAATCACAGGAGGACAGTGTGAATCGAATCT,"Intron (Dmrt3-201/Dmrt3, intron 1 of 1)",19,25610537,25623921,13385,1,Dmrt3-201,5384,Dmrt3-201,Dmrt3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,5,240590,ENSMUSG00000042372,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
23170,cg20284937,0.0000154,0.00000467,3.306395456,0.001056042,gain,ns,-0.0000116,0.00000793,-1.464190531,0.144155207,neg,ns,-0.000487175,0.002323069,-0.209711694,0.834030451,neg,ns,0.078818093,0.0000704,0.0000799,0.881788279,0.378574502,pos,ns,0.902280474,Rnf220,Rnf220_Intron,4,117380056,117380105,117380104,117380105,50,-,GCCTGGACTGTTTGCTCTGCCATTTCATATCATGCTAACAAGCTAATCCG,"Intron (Rnf220-201/Rnf220, intron 2 of 14)",4,117271463,117497052,225590,2,Rnf220-201,116947,Rnf220-201;Rnf220-202;Rnf220-207,Rnf220;Rnf220;Rnf220,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27636,cg16435982,-0.0000138,0.00000587,-2.349555014,0.019422981,loss,ns,-0.0000146,0.00000998,-1.46404779,0.144194179,neg,ns,-0.000119948,0.002923607,-0.0410274,0.967300463,neg,ns,0.014438604,-4.15E-09,0.000100543,-0.0000412,0.999967132,neg,ns,0.891275799,Vapb,Vapb_Exon,2,173771537,173771586,173771537,173771538,50,+,CGATTATGATCCCAATGAGAAAAGTAAACACAAGTTTATGGTTCAGTCTA,"Exon (Vapb-201/Vapb, exon 3 of 6)",2,173737511,173784339,46829,1,Vapb-201,34026,Vapb-201;Vapb-202,Vapb;Vapb,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,56491,ENSMUSG00000054455,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16415,cg11142221,-0.000046,0.00000683,-6.731918308,8.12E-11,loss,yes,0.000017,0.0000116,1.463678035,0.144295171,pos,ns,-0.008083086,0.003397527,-2.379108741,0.017959661,neg,ns,1.745701874,0.000258808,0.000116841,2.215052298,0.027483172,pos,ns,0.831311368,Arel1,Arel1_Exon,12,84941804,84941853,84941852,84941853,50,-,GGATCCAGGTAATTTCCCCGCACGTAGTCATAAATAGTCCGGTCCCCTCG,"Exon (Arel1-202/Arel1, exon 4 of 19)",12,84918148,84970824,52677,2,Arel1-202,28971,Arel1-202;Arel1-201;Arel1-203;Arel1-208;Arel1-204;Arel1-206;Arel1-205,Arel1;Arel1;Arel1;Arel1;Arel1;Arel1;Arel1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,68497,ENSMUSG00000042350,conserved gene and region,12,84941801,84941896,96,*,96,9,0.552083333,1.24137931,0.09375,0.000000648,CpGisland,TRUE,U10,Tr-S
2640,cg24914053,-0.00000246,0.00000178,-1.37908041,0.168864119,loss,ns,0.00000443,0.00000302,1.463551152,0.144329839,pos,ns,0.001323866,0.00088607,1.49408764,0.136169863,pos,ns,0.865918999,-0.0000579,0.0000305,-1.901404559,0.058176084,neg,ns,0.960925723,Phtf2,Phtf2_Exon,5,20782457,20782506,20782457,20782458,50,-,CGAGAGCTGCAACTAGTACCCGATTTAGGGGCGTCCTGAAATCAAGATAT,"Exon (Phtf2-201/Phtf2, exon 10 of 18)",5,20758663,20882124,123462,2,Phtf2-201,99618,Phtf2-201;Phtf2-203;Phtf2-202,Phtf2;Phtf2;Phtf2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,68770,ENSMUSG00000039987,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7453,cg06405929,0.0000485,0.00000428,11.34670508,3.44E-25,gain,yes,-0.0000106,0.00000727,-1.463529691,0.144335704,neg,ns,0.003720145,0.0021289,1.747449392,0.081549585,pos,ns,1.088578243,-0.0000163,0.0000732,-0.222725397,0.82389591,neg,ns,0.094050506,Pou3f3,Pou3f3_Exon,1,42693515,42693564,42693515,42693516,50,+,CGTGTACTGTGAAATTCATAGCAGTAATTTAGACAAAATCCTCACTGTAT,Promoter (1-2kb),1,42694925,42703176,8252,1,Pou3f3-202,-1361,Pou3f3-202;Pou3f3-201,Pou3f3;Pou3f3,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,37,18993,ENSMUSG00000045515,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
10709,cg16413715,0.0000119,0.00000665,1.795116951,0.073609037,gain,ns,0.0000165,0.0000113,1.463454037,0.144356378,pos,ns,0.009292093,0.003312226,2.805392188,0.005343129,pos,ns,2.272204303,-0.000235853,0.000113907,-2.070576012,0.039225958,neg,ns,0.852072184,Unc5a,Unc5a_Exon,13,54997305,54997354,54997305,54997306,50,+,CGCTTTCTGTGAGGGGCAGAATGTCCAGAAAACAGCCTGCGCCACCCTGT,"Exon (Unc5a-201/Unc5a, exon 6 of 16)",13,54949411,55006018,56608,1,Unc5a-201,47894,Unc5a-201;Unc5a-202;Unc5a-203,Unc5a;Unc5a;Unc5a,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,12,107448,ENSMUSG00000025876,conserved gene and region,13,54997158,54997472,315,*,315,22,0.676190476,0.63,0.06984127,1.18E-13,CpGisland,TRUE,U11,Tr-P
13547,cg26841677,-0.00000575,0.00000258,-2.226826057,0.026677006,loss,ns,0.00000642,0.00000439,1.463126201,0.144445995,pos,ns,0.003227801,0.001284685,2.51252308,0.012494576,pos,ns,1.903278463,-0.0000954,0.0000442,-2.159953393,0.031542577,neg,ns,0.933959818,Gm10172,Gm10172_Intergenic_downstream,7,71234321,71234370,71234369,71234370,50,-,GAATCGATAGAGGTAATTCACAGAGCAATTAGCCCCTCATCTGTCAAACG,Distal Intergenic,7,71332363,71332921,559,2,Gm10172-201,98600,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,31,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8592,cg12314723,0.00000364,0.00000183,1.986782924,0.047826503,gain,ns,-0.00000455,0.00000311,-1.462821663,0.144529282,neg,ns,0.002407486,0.000911627,2.640865616,0.008688396,pos,ns,2.061060395,-0.0000133,0.0000314,-0.424390236,0.671575609,neg,ns,0.948641146,Btrc,Btrc_Exon,19,45423143,45423192,45423191,45423192,50,+,CCAGGTCTCTGTGGCTGGGCTGCTCCAGCCTGGCGGACAGCATGCCTTCG,"Exon (Btrc-201/Btrc, exon 2 of 15)",19,45363734,45507736,144003,1,Btrc-204,59409,Btrc-204;Btrc-201;Btrc-210;Btrc-206;Btrc-202;Btrc-207;Btrc-203,Btrc;Btrc;Btrc;Btrc;Btrc;Btrc;Btrc,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,30,98,12234,ENSMUSG00000025217,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10878,cg12207562,-0.0000123,0.00000251,-4.906586505,0.0000015,loss,yes,-0.00000623,0.00000426,-1.462681246,0.144567696,neg,ns,-0.002038665,0.001247967,-1.63358859,0.103360423,neg,ns,0.985645724,0.0000554,0.0000429,1.29131289,0.19755724,pos,ns,0.950322825,Ralgapa1,Ralgapa1_Intron,12,55721335,55721384,55721383,55721384,50,+,CTTGCTTCAGTTGCATTAAGCCAAACTGGTGCTGTCTTTCTCCTTTTGCG,"Intron (Ralgapa1-211/Ralgapa1, intron 17 of 39)",12,55602896,55820767,217872,2,Ralgapa1-211,99383,Ralgapa1-211;Ralgapa1-212;Ralgapa1-201;Ralgapa1-202;Ralgapa1-204;Ralgapa1-207;Ralgapa1-208,Ralgapa1;Ralgapa1;Ralgapa1;Ralgapa1;Ralgapa1;Ralgapa1;Ralgapa1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,15,56784,ENSMUSG00000021027,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6507,cg07188186,-0.0000439,0.00000925,-4.741215367,0.00000324,loss,ns,0.000023,0.0000157,1.462443002,0.144632892,pos,ns,-0.005702962,0.004604041,-1.238686166,0.216398854,neg,ns,0.664745043,0.000266612,0.000158333,1.683870982,0.093213206,pos,ns,0.336139354,Zfp536,Zfp536_Intron,7,37563545,37563594,37563545,37563546,50,+,CGGCAACAATAGGGTGCTCAGTCTACTGGAAAATTGTGTTCATCAGCTAA,"Intron (Zfp536-211/Zfp536, intron 1 of 3)",7,37318024,37568390,250367,2,Zfp536-211,4796,Zfp536-211;Zfp536-202;Zfp536-201;Zfp536-203;Zfp536-206,Zfp536;Zfp536;Zfp536;Zfp536;Zfp536,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,73,112,243937,ENSMUSG00000043456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
1749,cg19631884,0.0000125,0.00000404,3.104305584,0.002083241,gain,ns,0.00001,0.00000686,1.462150955,0.144712841,pos,ns,0.003201441,0.002010639,1.592250074,0.112347658,pos,ns,0.949435978,-0.00003,0.0000691,-0.434253558,0.664406413,neg,ns,0.007159665,Kctd1,Kctd1_Exon,18,15062961,15063010,15062961,15062962,50,+,CGCGGCACAGCGCCCCCTTGTCCATGGTCTCGAAGTCCGGGCTCTGCGCC,"Exon (Kctd1-202/Kctd1, exon 1 of 5)",18,14968685,15151446,182762,2,Kctd1-201,88436,Kctd1-201;Kctd1-202;Kctd1-206;Kctd1-205,Kctd1;Kctd1;Kctd1;Kctd1,0;0;0;-1072,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,24,106931,ENSMUSG00000036225,conserved gene and region,18,15062316,15063260,945,*,945,97,0.650793651,0.97,0.102645503,9.90E-75,CpGisland,TRUE,U3,Pr-B
4947,cg07763792,0.0000422,0.00000456,9.250218536,3.76E-18,gain,yes,-0.0000113,0.00000775,-1.462073292,0.144734108,neg,ns,-0.003260558,0.00226909,-1.436945556,0.151741961,neg,ns,0.818894309,0.000134859,0.000078,1.728217462,0.084945024,pos,ns,0.806683331,Ass1,Ass1_Intron,2,31516681,31516730,31516729,31516730,50,+,TTCTCACTGTGTCTCCGACCATTTCCCTTTTCTTTTTGATTTCTACATCG,"Intron (Ass1-201/Ass1, intron 14 of 15)",2,31470207,31520672,50466,1,Ass1-201,46474,Ass1-201;Ass1-204;Ass1-203,Ass1;Ass1;Ass1,0;0;-1760,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,9,11898,ENSMUSG00000076441,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16693,cg22792446,-0.00000137,0.00000122,-1.117839682,0.264501006,loss,ns,0.00000303,0.00000207,1.461985967,0.144758023,pos,ns,-0.00038004,0.000607901,-0.625166608,0.532321628,neg,ns,0.273825889,0.00000871,0.0000209,0.416644528,0.677226774,pos,ns,0.971514222,Ift43,Ift43_Intron,12,86153722,86153771,86153722,86153723,50,+,CGGCTCTTTGTAAATGAGGGGACATAGTGTCGCAGCAGCTCATGAATATG,"Intron (Ift43-201/Ift43, intron 4 of 7)",12,86082563,86162458,79896,1,Ift43-201,71159,Ift43-201;Ift43-205;Ift43-206;Ift43-207;Ift43-203;Ift43-202,Ift43;Ift43;Ift43;Ift43;Ift43;Ift43,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,5,76411,ENSMUSG00000007867,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10353,cg10775893,-0.0000106,0.00000631,-1.68506234,0.092982893,loss,ns,-0.0000157,0.0000107,-1.461805229,0.144807529,neg,ns,-0.000958476,0.003139676,-0.305278604,0.760358844,neg,ns,0.118981398,-0.0000611,0.000107973,-0.56574005,0.571979764,neg,ns,0.071091447,Abca1,Abca1_Promoter,4,53159999,53160048,53159999,53160000,50,-,CGGCCTCTGTTTATGTAGTTCAGTCACTCAGCAGAAAGCACGTGGAGCCG,Promoter (<=1kb),4,53030787,53159895,129109,2,Abca1-201,-153,Abca1-201,Abca1,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,7,11303,ENSMUSG00000015243,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
20619,cg14419939,0.00000919,0.00000223,4.124092457,0.0000479,gain,ns,-0.00000554,0.00000379,-1.461754543,0.144821416,neg,ns,0.000476295,0.001109511,0.429284,0.668014752,pos,ns,0.175213947,0.0000227,0.0000382,0.59530715,0.552072498,pos,ns,0.94724006,Rsbn1,Rsbn1_threeUTR,3,103961486,103961535,103961486,103961487,50,-,CGCATAACCAAAGATGTGATTTGTTTTCATGCTGAGGATTTTACTGATGT,3' UTR,3,103914120,103966613,52494,1,Rsbn1-201,47366,Rsbn1-201;Rsbn1-202;Rsbn1-203;Rsbn1-204,Rsbn1;Rsbn1;Rsbn1;Rsbn1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,16,229675,ENSMUSG00000044098,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11283,cg04577801,0.0000785,0.00000735,10.67982189,7.04E-23,gain,yes,-0.0000183,0.0000125,-1.461632474,0.144854862,neg,ns,0.001376421,0.003658096,0.376267182,0.706975658,pos,ns,0.150595539,0.000177401,0.000125802,1.410168603,0.159492456,pos,ns,0.148502068,Hand2,Hand2_Exon,8,57320079,57320128,57320079,57320080,50,-,CGCTTTTATGAGGGAGGCAGGAATGCAGAGATATATTTATATGTTTGTTC,Promoter (<=1kb),8,57320983,57324633,3651,1,Hand2-201,-904,Hand2-201,Hand2,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,9,15111,ENSMUSG00000038193,mapped to different genes,8,57319807,57320080,274,*,274,15,0.547445256,0.757045496,0.054744526,4.86E-08,CpGisland,TRUE,NA,NRS
24833,cg23131802,0.000000758,0.00000286,0.265086544,0.791118972,gain,ns,-0.0000071,0.00000486,-1.461625363,0.14485681,neg,ns,-0.002073713,0.001423747,-1.456518035,0.146261549,neg,ns,0.834869832,0.00000629,0.000049,0.128523224,0.89781826,pos,ns,0.949891181,Zfp362,Zfp362_threeUTR,4,128773334,128773383,128773334,128773335,50,-,CGAGTTAAGGCTTAAAAAGTGTATAAAAATAACACAGTTAATATTCAAAA,3' UTR,4,128773088,128806045,32958,2,Zfp362-202,32662,A3galt2-202;A3galt2-201;Zfp362-202;Zfp362-201;Zfp362-204,A3galt2;A3galt2;Zfp362;Zfp362;Zfp362,17970;14076;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,7,230761,ENSMUSG00000028799,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3433,cg22166290,0.0000159,0.00000215,7.381763687,1.45E-12,gain,yes,-0.00000534,0.00000365,-1.461514989,0.144887058,neg,ns,0.001499892,0.001070109,1.40162516,0.162027613,pos,ns,0.790410966,-0.0000266,0.0000368,-0.723003452,0.470222893,neg,ns,0.078939586,Bcl11a,Bcl11a_fiveUTR,11,24078270,24078319,24078318,24078319,50,+,AAAGGCACTGATGAAGATATTTTCTCTGGAGTCTCCTTCTTTCTAACCCG,Promoter (<=1kb),11,24078056,24173194,95139,1,Bcl11a-201,214,A830031A19Rik-201;Bcl11a-201;Bcl11a-203;Bcl11a-205;Bcl11a-202;Bcl11a-204,A830031A19Rik;Bcl11a;Bcl11a;Bcl11a;Bcl11a;Bcl11a,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,10,98,14025,ENSMUSG00000000861,conserved gene and region,11,24078318,24078446,129,*,129,20,0.705426357,1.347962382,0.15503876,8.63E-20,CpGisland,TRUE,NA,NRS
11113,cg05596483,-0.0000156,0.00000608,-2.566830043,0.010732451,loss,ns,-0.0000151,0.0000103,-1.461487796,0.144894511,neg,ns,-0.010215637,0.003026,-3.375953942,0.000829259,neg,ns,3.081309583,0.000220508,0.000104064,2.118963665,0.034888463,pos,ns,0.831718159,Fbxo8,Fbxo8_Intergenic_downstream,8,56639462,56639511,56639510,56639511,50,-,TCCAGCCCCAAGCCTGGTTAATGCATCTGTCCAGAACACGTAATTACTCG,Distal Intergenic,8,56587920,56591473,3554,1,Fbxo8-205,51591,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,50753,ENSMUSG00000038206,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7319,cg13321436,-0.00000544,0.0000028,-1.944408706,0.052750478,loss,ns,0.00000694,0.00000475,1.461269888,0.144954244,pos,ns,0.002300191,0.001391319,1.653245095,0.099293284,pos,ns,1.003080126,-0.0000991,0.0000478,-2.070333182,0.039248836,neg,ns,0.924690941,Stag2,Stag2_threeUTR,X,42276536,42276585,42276584,42276585,50,-,TGCCATTTTGACATCAACTCATTTTGCGAGGCTTAGGCAGCTAGACATCG,3' UTR,20,42149317,42277185,127869,1,Stag2-203,127219,Stag2-203;Stag2-202;Stag2-201,Stag2;Stag2;Stag2,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,7,20843,ENSMUSG00000025862,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23587,cg17183991,0.000146967,0.0000165,8.903002045,4.67E-17,gain,yes,-0.000041,0.000028,-1.461233523,0.144964214,neg,ns,0.015496505,0.008215976,1.886142804,0.060210339,pos,ns,1.220328924,-0.000434578,0.000282547,-1.538076218,0.125050025,neg,ns,0.103780633,Hs6st3,Hs6st3_Exon,14,119138420,119138469,119138468,119138469,50,+,TGAAAGGTTCAACAAGTGGCTGCTGACGCCGGTGCTCACTCTCCTCTTCG,Promoter (<=1kb),14,119138341,119869815,731475,1,Hs6st3-201,79,Hs6st3-201,Hs6st3,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,5,50787,ENSMUSG00000053465,conserved gene and region,14,119137599,119138920,1322,*,1322,145,0.705748865,0.880920212,0.1096823,5.90E-116,CpGisland,TRUE,U3,Pr-B
20445,cg09669935,0.000116743,0.00000926,12.60287282,1.10E-29,gain,yes,-0.000023,0.0000157,-1.461118702,0.144995699,neg,ns,0.019113868,0.004610385,4.145828727,0.0000437,pos,ns,4.359052942,-0.000298602,0.000158551,-1.883319971,0.060593018,neg,ns,0.809036859,Hoxc4,Hoxc4_threeUTR,15,103036805,103036854,103036853,103036854,50,-,GAAATGCCCCGTGATCAATAATAAACCAGTGGATGTGAATTAGTTTTACG,3' UTR,15,103034395,103036852,2458,1,Hoxc4-201,2410,Hoxc4-202;Hoxc4-201,Hoxc4;Hoxc4,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,17,91,15423,ENSMUSG00000075394,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
2740,cg02008678,0.0000189,0.00000268,7.056394839,1.12E-11,gain,yes,-0.00000665,0.00000455,-1.46110635,0.144999086,neg,ns,0.000992491,0.001332673,0.744737119,0.456994856,pos,ns,0.340088689,-0.00000394,0.0000458,-0.086038998,0.93149096,neg,ns,0.044919095,Klhl14,Klhl14_fiveUTR,18,21652323,21652372,21652371,21652372,50,+,TGTGGCTGGGGTCGAAGGTGGAGGTCCTGTCCCCGGATCTGGACATGGCG,Promoter (<=1kb),18,21550377,21652368,101992,2,Klhl14-201,0,Klhl14-201;Klhl14-202,Klhl14;Klhl14,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,38,225266,ENSMUSG00000042514,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
566,cg00096922,0.0000724,0.00000802,9.027513548,1.91E-17,gain,yes,-0.0000199,0.0000136,-1.460854279,0.145068224,neg,ns,0.012558922,0.003990029,3.147576718,0.0018064,pos,ns,2.743186028,-0.000160584,0.000137217,-1.170296121,0.242780716,neg,ns,0.120270522,Dlx5,Dlx5_fiveUTR,6,6882079,6882128,6882127,6882128,50,-,GACTGCTGGCTGAGGCGCAGCACAGCCTTGGTTAAATCCTTAATTGCGCG,Promoter (<=1kb),6,6877805,6882085,4281,2,Dlx5-201,0,Dlx5-202;Dlx5-201;Dlx5-203,Dlx5;Dlx5;Dlx5,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,6,13395,ENSMUSG00000029755,conserved gene and region,6,6881983,6882197,215,*,215,16,0.655813954,0.763087844,0.074418605,1.72E-10,CpGisland,TRUE,NA,NRS
12224,cg23014445,0.0000103,0.00000373,2.775232972,0.005851217,gain,ns,-0.00000925,0.00000633,-1.460785074,0.14508721,neg,ns,-0.001133395,0.001854647,-0.611111135,0.541573842,neg,ns,0.266342321,0.0000654,0.0000638,1.025356152,0.305994597,pos,ns,0.94435944,Iqch,Iqch_Intron,9,63523780,63523829,63523780,63523781,50,-,CGAGAACATTTTCCTGCCGAGACCAATTTGAATAAAACAAGGGGCCTTCC,"Intron (Gm16759-201/Gm16759-201, intron 3 of 4)",9,63421455,63602493,181039,2,Iqch-201,78664,Iqch-201;Iqch-203;Iqch-204;Iqch-202;Iqch-206,Iqch;Iqch;Iqch;Iqch;Iqch,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,22,78250,ENSMUSG00000037801,mapped to different genes,9,63523737,63523798,62,*,62,7,0.548387097,1.522807018,0.112903226,0.00000583,CpGisland,TRUE,NA,NRS
895,cg07733185,-0.00000747,0.00000413,-1.810268573,0.071222308,loss,ns,0.0000102,0.00000701,1.460677559,0.14511671,pos,ns,-0.001994745,0.002053105,-0.971574716,0.332019626,neg,ns,0.478836243,-0.0000219,0.0000706,-0.309755145,0.756955279,neg,ns,0.919649294,Grm3,Grm3_Exon,5,9511633,9511682,9511681,9511682,50,+,ATCAACATGCTGGAATCTTTGACATTGCATTTTAGGATGACTGTTTCCCG,"Exon (Grm3-201/Grm3, exon 4 of 6)",5,9485541,9725170,239630,2,Grm3-201,213488,Grm3-201,Grm3,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,108069,ENSMUSG00000003974,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16818,cg17531219,0.00000594,0.00000688,0.862388462,0.389140422,gain,ns,0.0000171,0.0000117,1.460602258,0.145137374,pos,ns,-0.000535891,0.003425734,-0.15643093,0.875795182,neg,ns,0.057597448,0.0000632,0.000117811,0.536247132,0.59217234,pos,ns,0.778079808,Gm8504,Gm8504_Intergenic_upstream,12,86635938,86635987,86635938,86635939,50,-,CGGGCAATCGCTGGTAAATCTTTATTAATTTTAATTGGCGGCACCCATTT,Distal Intergenic,12,86650573,86651662,1090,1,Gm8504-201,-14635,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,8,667191,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13698,cg19374336,-0.000000222,0.000000737,-0.300554101,0.763956,loss,ns,-0.00000183,0.00000125,-1.460567185,0.145146999,neg,ns,0.0000764,0.00036689,0.208364592,0.835081134,pos,ns,0.078271328,-0.0000308,0.0000126,-2.440256445,0.015236711,neg,ns,0.011411287,Rab8a,Rab8a_Exon,8,72161360,72161409,72161408,72161409,50,-,TGGCGAAGACCTACGATTACCTGTTCAAGCTGCTGCTGATCGGGGACTCG,Promoter (<=1kb),8,72161200,72183904,22705,1,Rab8a-201,160,Rab8a-201;Rab8a-203;Rab8a-202,Rab8a;Rab8a;Rab8a,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,5,17274,ENSMUSG00000003037,conserved gene and region,8,72161136,72161662,527,*,527,47,0.669829222,0.805967721,0.089184061,1.73E-33,CpGisland,TRUE,U1,Pr-A
1587,cg05649080,-0.00000555,0.00000338,-1.641711542,0.101663847,loss,ns,0.00000838,0.00000574,1.460319828,0.145214898,pos,ns,0.002806136,0.00168215,1.668183976,0.096288911,pos,ns,1.016423723,-0.0000867,0.0000578,-1.49820001,0.135098852,neg,ns,0.915035524,Zfp521,Zfp521_Intron,18,13798393,13798442,13798393,13798394,50,-,CGTCTGCTAAAGAGCGCTCTAATTAAGATGTATCTGGTGAACAAGTGTCT,"Intron (Zfp521-201/Zfp521, intron 5 of 7)",18,13687013,13972787,285775,2,Zfp521-201,174345,Zfp521-201;Zfp521-205;Zfp521-204,Zfp521;Zfp521;Zfp521,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,81,225207,ENSMUSG00000024420,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9568,cg13453408,0.00000574,0.00000125,4.57904933,0.00000677,gain,ns,-0.00000311,0.00000213,-1.460025454,0.145295734,neg,ns,0.000756161,0.000624189,1.211429107,0.226653625,pos,ns,0.64463733,-0.0000199,0.0000215,-0.927710105,0.354279696,neg,ns,0.023897845,Foxg1,Foxg1_Promoter,12,49381764,49381813,49381812,49381813,50,+,AAGAATCCGGTTACACCGAATCATTTCACGCTAGACCGACTACGAAAACG,Promoter (<=1kb),12,49382660,49384364,1705,1,Foxg1-202,-847,Foxg1-202;Foxg1-203;Foxg1-204;Foxg1-201;Gm43517-201,Foxg1;Foxg1;Foxg1;Foxg1;Gm43517,0;-987;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,11,27,15228,ENSMUSG00000020950,mapped to different genes,12,49381746,49381860,115,*,115,11,0.556521739,1.280364373,0.095652174,1.73E-08,CpGisland,TRUE,U13,Hc-P
10342,cg27569109,-0.00000413,0.00000286,-1.446377404,0.14908168,loss,ns,0.00000709,0.00000485,1.459917521,0.145325381,pos,ns,0.002405405,0.001422307,1.691200439,0.091803547,pos,ns,1.037140539,-0.0000189,0.0000489,-0.38636218,0.699493503,neg,ns,0.937874554,Ext1,Ext1_Exon,15,53107521,53107570,53107521,53107522,50,+,CGAGGAACCAGACAGAAAGTGGCATTGTGCAGCATTTCCCGATAATCATA,"Exon (Ext1-201/Ext1, exon 2 of 11)",15,53064038,53346159,282122,2,Ext1-201,238589,Ext1-201;Ext1-203;Ext1-202;Ext1-204,Ext1;Ext1;Ext1;Ext1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,16,14042,ENSMUSG00000061731,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10106,cg11864734,0.000165163,0.0000146,11.28746478,5.55E-25,gain,yes,-0.0000363,0.0000249,-1.459890574,0.145332784,neg,ns,0.02560815,0.007282724,3.51628746,0.000502977,pos,ns,3.298451744,-0.000563481,0.000250452,-2.249852097,0.025159535,neg,ns,0.289367049,Gm28308,Gm28308_Intron,6,52177282,52177331,52177330,52177331,50,-,AAGGCGTGGGTCAATAATCAACCCGCACTTTCTCCTCCAAACTGCTGACG,"Intron (Hoxaas3-203/Hoxaas3-203, intron 1 of 1)",6,52163359,52213339,49981,2,Gm28308-201,36008,Gm28308-201;Hoxa3-201;Hoxa3-202;Hoxa3-204,Gm28308;Hoxa3;Hoxa3;Hoxa3,0;0;0;7543,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,46,103,,NA,mapped to different genes,6,52177164,52177376,213,*,213,16,0.577464789,0.901110524,0.075117371,1.49E-10,CpGisland,TRUE,U3,Pr-B
12503,cg20960974,-0.00000217,0.00000596,-0.364310467,0.715874554,loss,ns,0.0000148,0.0000101,1.459859363,0.145341358,pos,ns,0.010781493,0.002967943,3.632648801,0.000328189,pos,ns,3.483875767,-0.000313009,0.000102067,-3.066690293,0.002355133,neg,ns,0.905747686,Fzd5,Fzd5_threeUTR,1,64731072,64731121,64731072,64731073,50,+,CGGTATGTGCCTCATTTGGCTCAGTAATAAATTCACCTGCACCAAACCCG,3' UTR,1,64730558,64737751,7194,2,Fzd5-201,6630,Fzd5-201;Fzd5-202,Fzd5;Fzd5,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,3,14367,ENSMUSG00000045005,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9641,cg14911432,-0.00000263,0.00000228,-1.153902005,0.249429171,loss,ns,-0.00000565,0.00000387,-1.459717653,0.145380294,neg,ns,-0.002048698,0.001134391,-1.805989824,0.071889761,neg,ns,1.143332961,0.0000616,0.000039,1.579321134,0.115282212,pos,ns,0.941786316,Rnf20,Rnf20_Exon,4,49655906,49655955,49655906,49655907,50,-,CGCCAGCGCAAATGTCCCAAGTGTAATGCTGCTTTTGGTGCCAATGATTT,"Exon (Rnf20-210/Rnf20, exon 20 of 20)",4,49632060,49656886,24827,1,Rnf20-210,23846,Rnf20-210;Rnf20-201;Rnf20-203;Rnf20-205,Rnf20;Rnf20;Rnf20;Rnf20,0;0;5643;4938,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,109331,ENSMUSG00000028309,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5422,cg05147195,-0.000104251,0.0000241,-4.324881196,0.0000206,loss,ns,-0.0000598,0.000041,-1.459543825,0.145428065,neg,ns,-0.013766774,0.011997231,-1.147495922,0.252061518,neg,ns,0.598493453,0.000427457,0.000412584,1.036047758,0.300987352,pos,ns,0.743917437,Daxx,Daxx_Exon,17,33911847,33911896,33911847,33911848,50,+,CGGCTCATCAACAAGCCAGGGCCTGATACCTTCCCTGACTATGGGGATGT,"Exon (Daxx-201/Daxx, exon 3 of 8)",17,33909445,33915590,6146,1,Daxx-201,2402,Daxx-204;Daxx-201;Daxx-210;Daxx-206;Daxx-202;Daxx-203;Daxx-208;Daxx-209;Daxx-207;Daxx-205;Tapbp-203;Tapbp-209;Zbtb22-202;Zbtb22-201,Daxx;Daxx;Daxx;Daxx;Daxx;Daxx;Daxx;Daxx;Daxx;Daxx;Tapbp;Tapbp;Zbtb22;Zbtb22,2433;0;2349;2349;0;1621;1570;-793;-854;-1663;-4003;-4290;-4008;-4275,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,13163,ENSMUSG00000002307,conserved gene and region,17,33911692,33911926,235,*,235,19,0.595744681,0.930208333,0.080851064,4.94E-13,CpGisland,TRUE,U10,Tr-S
16605,cg16869898,0.0000351,0.00000391,8.982016355,2.65E-17,gain,yes,-0.00000969,0.00000664,-1.459432989,0.145458532,neg,ns,0.004133897,0.001945594,2.12474796,0.034398586,pos,ns,1.46345941,-0.000107567,0.0000669,-1.60765997,0.108927648,neg,ns,0.070164741,Six3,Six3_Exon,17,85621953,85622002,85621953,85621954,50,+,CGAACTGGCGCAGGCCACCGGCCTCACTCCCACACAAGTAGGCAACTGGT,"Exon (Six3-202/Six3, exon 2 of 3)",17,85613608,85625222,11615,1,Six3-202,8345,Six3-202;Six3-203;Six3-201,Six3;Six3;Six3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,24,20473,ENSMUSG00000038805,conserved gene and region,17,85621951,85622167,217,*,217,20,0.64516129,0.892269737,0.092165899,7.82E-15,CpGisland,TRUE,U13,Hc-P
17548,cg15988120,0.00000551,0.00000564,0.977874207,0.328899032,gain,ns,0.000014,0.00000958,1.459282382,0.145499938,pos,ns,0.001993623,0.002805889,0.710513701,0.477919817,pos,ns,0.320644961,-0.000213481,0.0000965,-2.212369728,0.027669778,neg,ns,0.804159639,Anks1b,Anks1b_fiveUTR,10,90897303,90897352,90897351,90897352,50,-,TTACACCACTGGTGGCTCCCTAGACGTTCCTCACATTATCATGCAGGGCG,5' UTR,10,89873509,90970219,1096711,1,Anks1b-233,1023794,Anks1b-233;Anks1b-222;Anks1b-214;Anks1b-215;Anks1b-208;Anks1b-210;Anks1b-221;Anks1b-219;Anks1b-213;Anks1b-216;Anks1b-224;Anks1b-231;Anks1b-218;Anks1b-217;Anks1b-201;Anks1b-211;Anks1b-229;Anks1b-212;Anks1b-225;Anks1b-205;Anks1b-204;Anks1b-220;Anks1b-232;Anks1b-202;Anks1b-228,Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,9,14,77531,ENSMUSG00000058589,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10009,cg24993070,0.0000174,0.00000426,4.073737982,0.0000588,gain,ns,-0.0000106,0.00000724,-1.459238767,0.145511931,neg,ns,0.001199721,0.002119966,0.565915368,0.57186072,pos,ns,0.242709733,-0.0000566,0.0000729,-0.776193455,0.438226558,neg,ns,0.923710881,Skap2,Skap2_Intergenic_downstream,6,51848602,51848651,51848650,51848651,50,+,TTTTGAATGTCACCCAAAGGACATTTCTGTACCTTGTCTTTACTGAAGCG,Distal Intergenic,6,51859104,51871929,12826,2,Skap2-207,23278,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,19,54353,ENSMUSG00000059182,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27670,cg13352230,-0.0000196,0.00000311,-6.301672231,1.01E-09,loss,yes,-0.00000772,0.00000529,-1.459209468,0.145519987,neg,ns,-0.003429773,0.001549262,-2.213810423,0.027569424,neg,ns,1.559572306,0.0000969,0.0000533,1.818095242,0.070014616,pos,ns,0.95440224,Sdccag8,Sdccag8_Intron,1,176946716,176946765,176946764,176946765,50,+,CCAAACTGGAGAAAAGCTTTAGCCATTAATCGGTTCTTAATTCACTGTCG,"Intron (Sdccag8-204/Sdccag8, intron 15 of 16)",1,176814660,176956360,141701,1,Sdccag8-204,132056,Sdccag8-204;Sdccag8-201;Sdccag8-203,Sdccag8;Sdccag8;Sdccag8,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,20,76816,ENSMUSG00000026504,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25945,cg20207416,-0.0000357,0.00000882,-4.045420108,0.000066,loss,ns,-0.0000219,0.000015,-1.459151336,0.145535974,neg,ns,0.006007127,0.004391245,1.367978038,0.172309723,pos,ns,0.763690215,0.000288458,0.000151015,1.910132811,0.057038701,pos,ns,0.908650078,Spen,Spen_Exon,4,141517250,141517299,141517298,141517299,50,+,CCTCCCGTCCCCCGTTCATGGTGTCCATAGGCACTATGTTCATAAGCACG,"Exon (Spen-201/Spen, exon 3 of 15)",4,141467890,141538449,70560,2,Spen-201,21150,Spen-201;Spen-202;Spen-203;Spen-205,Spen;Spen;Spen;Spen,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,17,19,56381,ENSMUSG00000040761,conserved gene and region,4,141517106,141517299,194,*,194,13,0.510309278,1.030228758,0.067010309,4.64E-08,CpGisland,TRUE,U10,Tr-S
6803,cg25727636,0.00000436,0.00000402,1.084814317,0.278846822,gain,ns,-0.00000995,0.00000682,-1.458992219,0.145579738,neg,ns,0.007490923,0.001998818,3.747676946,0.000212844,pos,ns,3.67193781,-0.000146407,0.0000687,-2.129887838,0.033968252,neg,ns,0.910421725,Luc7l2,Luc7l2_Intron,6,38569980,38570029,38569980,38569981,50,-,CGTCTGGGGTTCAGTGGGGATTCGCAGTGTGTATGCAATGTTTGCAAGAT,"Intron (Luc7l2-213/Luc7l2, intron 2 of 8)",6,38551334,38605040,53707,1,Luc7l2-213,18646,Luc7l2-213;Luc7l2-208;Luc7l2-201;Luc7l2-209;Luc7l2-207;Luc7l2-205;Luc7l2-202;Luc7l2-204;Luc7l2-210;Luc7l2-203,Luc7l2;Luc7l2;Luc7l2;Luc7l2;Luc7l2;Luc7l2;Luc7l2;Luc7l2;Luc7l2;Luc7l2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,10,192196,ENSMUSG00000029823,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1916,cg02688223,0.00000295,0.0000155,0.190205187,0.849272838,gain,ns,0.0000385,0.0000264,1.4589612,0.14558827,pos,ns,0.010715128,0.007730574,1.386071589,0.166721227,pos,ns,0.778009102,-0.000617079,0.000265854,-2.321121574,0.020928596,neg,ns,0.766672404,Vstm2a,Vstm2a_threeUTR,11,16281927,16281976,16281975,16281976,50,-,CTGACTTTTTTCCAATATCACTTTCTCTTCTTAAAGCAAAGAGCAAATCG,3' UTR,11,16257724,16284186,26463,1,Vstm2a-201,24203,Vstm2a-201;Vstm2a-202;Vstm2a-205;Vstm2a-204;Vstm2a-203,Vstm2a;Vstm2a;Vstm2a;Vstm2a;Vstm2a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,7,211739,ENSMUSG00000048834,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12077,cg12981539,0.000000871,0.00000499,0.174529147,0.861563553,gain,ns,0.0000124,0.00000848,1.458934387,0.145595647,pos,ns,0.001200708,0.002484174,0.483343019,0.629193401,pos,ns,0.201215841,-0.0000754,0.0000854,-0.882037392,0.37843999,neg,ns,0.923911198,Kcnh7,Kcnh7_Intron,2,62762887,62762936,62762887,62762888,50,-,CGGTGGGTGTTGTGATTCCATTTATTAAGGTGTGAAGCAGACAGGAAAGA,"Intron (Kcnh7-201/Kcnh7, intron 9 of 15)",2,62693414,63184278,490865,2,Kcnh7-201,421342,Kcnh7-201,Kcnh7,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,3,170738,ENSMUSG00000059742,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20709,cg08303609,-0.00000643,0.00000325,-1.980239838,0.048560486,loss,ns,0.00000805,0.00000552,1.458910455,0.14560223,pos,ns,0.001137363,0.001616369,0.703652742,0.482177225,pos,ns,0.316793306,-0.0000672,0.0000556,-1.208033057,0.227955308,neg,ns,0.924757756,Gsc,Gsc_Intergenic_upstream,12,104567503,104567552,104567503,104567504,50,+,CGCCTCTGGAGTCTGGTATTAATAATAAATATTATTGCCGTGCATCCTTA,Distal Intergenic,12,104471209,104473330,2122,2,Gsc-201,-94173,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,4,14836,ENSMUSG00000021095,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
140,cg06897048,0.0000757,0.0000192,3.946987838,0.000098,gain,ns,-0.0000475,0.0000326,-1.458739969,0.145649138,neg,ns,0.025353315,0.009543258,2.656672858,0.008300159,pos,ns,2.080913566,-0.000572861,0.000328192,-1.745505074,0.081887751,neg,ns,0.690963131,Kdm2a,Kdm2a_Exon,19,4331194,4331243,4331242,4331243,50,-,TTTTTGGCCACTGTACTATAGGAACTCCAGTGAGGGCTAACTTGGGATCG,"Exon (Kdm2a-201/Kdm2a, exon 13 of 21)",19,4314419,4398285,83867,2,Kdm2a-201,67042,Kdm2a-201;Kdm2a-202;Kdm2a-214;Kdm2a-212;Kdm2a-210,Kdm2a;Kdm2a;Kdm2a;Kdm2a;Kdm2a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,21,30,225876,ENSMUSG00000054611,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
18879,cg06421474,0.0000294,0.00000596,4.933705931,0.00000132,gain,yes,-0.0000148,0.0000101,-1.458629126,0.145679642,neg,ns,0.001790061,0.002967289,0.603264719,0.546773714,pos,ns,0.262192372,-0.0000939,0.000102045,-0.920501084,0.358026717,neg,ns,0.044055304,Mitf,Mitf_Exon,6,97807216,97807265,97807216,97807217,50,+,CGAAGTCGGGGAGGAGTTTCATGAAGAGCCCAAAACCTATTACGAACTCA,Promoter (<=1kb),6,97807052,98018593,211542,1,Mitf-207,164,Mitf-207;Mitf-206;Mitf-202,Mitf;Mitf;Mitf,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,16,17342,ENSMUSG00000035158,conserved gene and region,6,97806973,97807259,287,*,287,27,0.655052265,0.885094232,0.094076655,4.06E-20,CpGisland,TRUE,NA,NRS
24323,cg16853731,0.0000694,0.00000561,12.38110792,7.03E-29,gain,yes,-0.0000139,0.00000953,-1.458378554,0.145748617,neg,ns,0.001853573,0.002791311,0.664050855,0.507151348,pos,ns,0.294862416,0.000210773,0.000096,2.19571708,0.028852918,pos,ns,0.159932996,Pou3f1,Pou3f1_threeUTR,4,124659641,124659690,124659689,124659690,50,-,TTTTTATTTATTCGTGGAGCCTCTCGGCTCCTGGGGTCCTTCTAACTCCG,3' UTR,4,124656807,124660655,3849,1,Pou3f1-201,2834,Pou3f1-201,Pou3f1,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,85,18991,ENSMUSG00000090125,conserved gene and region,4,124659224,124659760,537,*,537,47,0.648044693,0.8390625,0.087523278,4.32E-33,CpGisland,TRUE,U3,Pr-B
7939,cg23661793,0.0000178,0.0000107,1.664594379,0.097004063,gain,ns,-0.0000264,0.0000181,-1.458378209,0.145748712,neg,ns,0.008346231,0.005311806,1.571260441,0.117142235,pos,ns,0.931286495,-0.000397383,0.000182673,-2.175383279,0.03035673,neg,ns,0.716396443,Ebf1,Ebf1_Exon,11,44643402,44643451,44643402,44643403,50,+,CGCTGTTGTGACAAGAAAAGCTGTGGCAACCGAAATGAGACTCCCTCAGA,"Exon (Ebf1-203/Ebf1, exon 6 of 16)",11,44617317,45004995,387679,1,Ebf1-203,26085,Ebf1-203;Ebf1-202;Ebf1-201;Ebf1-207;Ebf1-204;Ebf1-205,Ebf1;Ebf1;Ebf1;Ebf1;Ebf1;Ebf1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,15,80,13591,ENSMUSG00000057098,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26996,cg21431551,-0.0000132,0.00000302,-4.353701483,0.0000182,loss,ns,-0.00000749,0.00000513,-1.458373086,0.145750122,neg,ns,-0.004476285,0.00150405,-2.976155104,0.003148629,neg,ns,2.501878476,0.0000947,0.0000517,1.831196569,0.068030844,pos,ns,0.945933272,Gdf5,Gdf5_Promoter,2,155945620,155945669,155945668,155945669,50,+,CCAATTTAATTACTCTCTGATGTCATGCTGTCTAAACTCATTTAAGTGCG,Promoter (<=1kb),2,155941023,155945367,4345,2,Gdf5-201,-253,Gdf5-201;Gm15557-201,Gdf5;Gm15557,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,6,14563,ENSMUSG00000038259,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2382,cg02841288,0.00000174,0.0000062,0.280108662,0.77958096,gain,ns,0.0000154,0.0000105,1.458323379,0.145763808,pos,ns,0.004538913,0.003086616,1.470514527,0.142436702,pos,ns,0.846378089,-0.0000952,0.000106148,-0.896921788,0.370456655,neg,ns,0.159950433,Tfap2b,Tfap2b_Intron,1,19221848,19221897,19221848,19221849,50,-,CGGCTAATTTTCTGTATTGGCCCCCTTTGAGCTATTAATGCAATCTGCAG,"Intron (Tfap2b-201/Tfap2b, intron 3 of 6)",1,19208914,19238576,29663,1,Tfap2b-201,12934,Tfap2b-201;Tfap2b-204;Tfap2b-202;Tfap2b-203,Tfap2b;Tfap2b;Tfap2b;Tfap2b,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,40,21419,ENSMUSG00000025927,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10339,cg07973495,0.000123306,0.000023,5.350715069,0.000000171,gain,yes,-0.0000571,0.0000392,-1.458093837,0.145827022,neg,ns,0.053005693,0.011469632,4.621394353,0.0000056,pos,ns,5.251891228,-0.000714932,0.00039444,-1.812525459,0.070872312,neg,ns,0.468933687,Abca1,Abca1_Exon,4,53072908,53072957,53072908,53072909,50,+,CGTGTCACTCTCATGGTCGCTGCCCAGGCCAGCATCAGAACTGCTCTGAG,"Exon (Abca1-201/Abca1, exon 24 of 50)",4,53030787,53159895,129109,2,Abca1-201,86938,Abca1-201,Abca1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,7,11303,ENSMUSG00000015243,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1525,cg23266866,0.0000683,0.0000158,4.310522306,0.0000219,gain,ns,-0.0000392,0.0000269,-1.45809363,0.145827079,neg,ns,-0.002437627,0.007882802,-0.309233548,0.757351612,neg,ns,0.120702446,0.000168877,0.000271089,0.622956607,0.533771047,pos,ns,0.666986576,Mrtfb,Mrtfb_Exon,16,13449533,13449582,13449533,13449534,50,-,CGGGGTTTTGAGGGCGAGATGAGTTTATGTTTTATCCAACTGGCCCTCAA,"Exon (Mir193b-201/Mir193b-201, exon 1 of 1)",16,13358421,13417529,59109,1,Mrtfb-204,91161,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,5,239719,ENSMUSG00000009569,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13076,cg13916266,0.000038,0.0000179,2.122643209,0.034576151,gain,ns,0.0000443,0.0000304,1.457846464,0.145895169,pos,ns,-0.007076773,0.008900997,-0.795054034,0.42719036,neg,ns,0.369378556,0.000819751,0.000306105,2.678009068,0.007800871,pos,ns,0.351448382,Chd3,Chd3_Promoter,11,69369789,69369838,69369837,69369838,50,+,GAGGGGGGCGCTCAGAAATATTTCTCAGAGCTGAGGCACTAAGATGGCCG,Promoter (<=1kb),11,69343273,69369406,26134,2,Chd3-202,-383,Chd3-202;Chd3-201,Chd3;Chd3,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,26,216848,ENSMUSG00000018474,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9229,cg25502186,-0.0000417,0.0000132,-3.152780127,0.001775503,loss,ns,0.0000328,0.0000225,1.457729302,0.145927454,pos,ns,-0.008869469,0.006584882,-1.346944218,0.178982014,neg,ns,0.747190609,0.000260316,0.000226454,1.149532204,0.25122268,pos,ns,0.63795625,Csmd3,Csmd3_Exon,15,47756040,47756089,47756040,47756041,50,+,CGTGGAGTGATGTCTGGAAAAATACAAACTGGCCAAACACCACTGATCAA,"Exon (Csmd3-204/Csmd3, exon 32 of 69)",15,47580637,48791933,1211297,2,Csmd3-204,1035844,Csmd3-204;Csmd3-201;Csmd3-209;Csmd3-207,Csmd3;Csmd3;Csmd3;Csmd3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,16,239420,ENSMUSG00000022311,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21996,cg19759021,0.00000302,0.00000814,0.37112005,0.710801612,gain,ns,0.0000202,0.0000138,1.457608111,0.145960855,pos,ns,-0.003268904,0.004052844,-0.806570452,0.420532343,neg,ns,0.376200597,0.000303957,0.000139377,2.180824568,0.029947825,pos,ns,0.012482943,Zfp143,Zfp143_fiveUTR,7,110061742,110061791,110061742,110061743,50,-,CGGACGAAGGAATTGTTGGAAAATTTTCTCGGAGGTTCGTATATAAATGT,Promoter (<=1kb),7,110061217,110094808,33592,1,Zfp143-204,525,Zfp143-204;Zfp143-205;Zfp143-201;Zfp143-202,Zfp143;Zfp143;Zfp143;Zfp143,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,7,20841,ENSMUSG00000061079,conserved gene and region,7,110061325,110061866,542,*,542,40,0.590405904,0.850196078,0.073800738,2.91E-25,CpGisland,TRUE,U1,Pr-A
6288,cg05318100,1.72E-08,0.00000183,0.009417768,0.992491877,gain,ns,0.00000453,0.00000311,1.457588671,0.145966213,pos,ns,0.00147056,0.000910347,1.615383486,0.107244927,pos,ns,0.969623242,-0.0000257,0.0000313,-0.819313048,0.413237263,neg,ns,0.040942024,Nrn1,Nrn1_fiveUTR,13,36734248,36734297,36734248,36734249,50,-,CGAGGATCAGTGAAATATATCTGCCGTTCAACTTAAGTCCCATCCTACGT,Promoter (<=1kb),13,36725625,36734477,8853,2,Nrn1-201,180,Nrn1-204;Nrn1-201;Nrn1-203;Nrn1-202;Nrn1-205,Nrn1;Nrn1;Nrn1;Nrn1;Nrn1,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,8,9,68404,ENSMUSG00000039114,conserved gene but different region,13,36734112,36734395,284,*,284,18,0.538732394,0.874444064,0.063380282,1.46E-10,CpGisland,TRUE,U1,Pr-A
1243,cg12325485,0.0000523,0.00000958,5.462045055,9.67E-08,gain,yes,0.0000237,0.0000163,1.457582997,0.145967777,pos,ns,0.015847009,0.004767824,3.32374035,0.000994638,pos,ns,3.002334829,-0.000353986,0.000163965,-2.158913366,0.031623924,neg,ns,0.034751069,Bcor,Bcor_Intron,X,12127920,12127969,12127920,12127921,50,+,CGCGCGAGAGACTTTTTAAATATTTACAGCCCGCTCTCCGCACGGTAGCC,"Intron (Bcor-201/Bcor, intron 1 of 13)",20,12036743,12160355,123613,2,Bcor-201,32386,Bcor-201;Bcor-207;Bcor-205;Bcor-208,Bcor;Bcor;Bcor;Bcor,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,56,74,71458,ENSMUSG00000040363,conserved gene and region,X,12127661,12128843,1183,*,1183,110,0.662721894,0.850033967,0.092983939,1.48E-79,CpGisland,TRUE,U3,Pr-B
13734,cg14894602,-0.0000175,0.0000056,-3.131449252,0.001905346,loss,ns,0.0000139,0.00000952,1.457536522,0.145980588,pos,ns,-0.002933777,0.002787697,-1.052401565,0.293434975,neg,ns,0.532488123,0.0000466,0.0000959,0.486224457,0.627151565,pos,ns,0.69217604,Gm4052,Gm4052_Intergenic_upstream,13,72298744,72298793,72298792,72298793,50,+,TTAATGCCGGAGAACACAGATGCCTACTTTAATTCTGCTTCATGATGCCG,Distal Intergenic,13,72350221,72350671,451,1,Gm4052-201,-51428,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,16,16,100042828,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16956,cg01850319,0.0000543,0.00000981,5.537320128,6.56E-08,gain,yes,0.0000243,0.0000167,1.457310214,0.146042981,pos,ns,0.022141566,0.004882231,4.535132777,0.00000824,pos,ns,5.084212494,-0.000331894,0.0001679,-1.976740714,0.048956892,neg,ns,0.27784712,Zfp423,Zfp423_threeUTR,8,87662380,87662429,87662428,87662429,50,+,TTGCAAATGACACTTTGATTGGATGTAATGTTCAAATGGCCCTCCCCACG,3' UTR,8,87661810,87804439,142630,2,Zfp423-203,142010,Zfp423-203;Zfp423-202;Zfp423-201,Zfp423;Zfp423;Zfp423,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,53,94187,ENSMUSG00000045333,conserved gene and region,8,87662428,87662690,263,*,263,25,0.619771863,0.998329791,0.095057034,8.88E-19,CpGisland,TRUE,NA,NRS
11326,cg19057480,-0.00000621,0.00000395,-1.571584533,0.117066996,loss,ns,0.00000977,0.00000671,1.457159823,0.146084456,pos,ns,0.003719049,0.001965158,1.892493499,0.059356761,pos,ns,1.226529805,-0.000122219,0.0000676,-1.808469998,0.071502248,neg,ns,0.922648211,Xpo4,Xpo4_threeUTR,14,57618174,57618223,57618174,57618175,50,+,CGCCAGGACTCTGTTGGCTTCAACAGCACATTTTGCGAGGATTCAAACAT,3' UTR,14,57577521,57665430,87910,2,Xpo4-209,47207,Xpo4-209;Xpo4-201;Xpo4-208,Xpo4;Xpo4;Xpo4,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,3,57258,ENSMUSG00000021952,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10505,cg18808994,-0.0000317,0.00000845,-3.750970115,0.000210188,loss,ns,0.0000209,0.0000144,1.457046117,0.146115819,pos,ns,-0.002314651,0.004206545,-0.550249958,0.582544196,neg,ns,0.234671121,-0.000252691,0.000144663,-1.74676187,0.081669032,neg,ns,0.434357006,Npas3,Npas3_Intron,12,53916621,53916670,53916621,53916622,50,+,CGTGACTAGGAACTATTTTCTTTGTAATTTGAGGTTTTGATTTAGTGGTC,"Intron (Npas3-204/Npas3, intron 4 of 10)",12,53248157,54069532,821376,1,Npas3-204,668464,Npas3-204;Npas3-201;Npas3-203,Npas3;Npas3;Npas3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,83,103,27386,ENSMUSG00000021010,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12122,cg01665819,-0.0000213,0.00000516,-4.131308814,0.0000464,loss,ns,-0.0000128,0.00000877,-1.456956524,0.146140536,neg,ns,-0.000940742,0.002568024,-0.36632935,0.714369218,neg,ns,0.146077268,0.0000481,0.0000883,0.544715581,0.586340776,pos,ns,0.918609962,Hnrnph3,Hnrnph3_Exon,10,63019395,63019444,63019443,63019444,50,+,TGAAAGAACTGAACTATTTCCTCTTTGCTGCAACCAAATGGTAGTCCACG,"Exon (Hnrnph3-201/Hnrnph3, exon 2 of 10)",10,63014664,63023894,9231,2,Hnrnph3-201,4450,Hnrnph3-201;Hnrnph3-202;Hnrnph3-204;Hnrnph3-205;Hnrnph3-206;Hnrnph3-203;Pbld2-202;Rufy2-205,Hnrnph3;Hnrnph3;Hnrnph3;Hnrnph3;Hnrnph3;Hnrnph3;Pbld2;Rufy2,0;0;0;-3227;0;0;-4871;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,7,432467,ENSMUSG00000020069,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18774,cg26196472,-0.0000099,0.00000231,-4.280318848,0.0000249,loss,ns,0.00000573,0.00000393,1.45693186,0.14614734,pos,ns,-0.002214493,0.001151519,-1.923106151,0.055382529,neg,ns,1.256627219,-0.00000978,0.0000396,-0.247084663,0.805006256,neg,ns,0.949298479,Gm5560,Gm5560_Intergenic_downstream,5,97277054,97277103,97277054,97277055,50,+,CGCCCCACATTGTGCCAAAGTGCCCTTGGCTATTAAAAACAGTGTTTTGT,Distal Intergenic,5,97264828,97265719,892,1,Gm5560-201,12226,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,9,433923,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8431,cg26522240,0.0000368,0.0000031,11.86037754,5.24E-27,gain,yes,-0.00000768,0.00000527,-1.456913481,0.146152411,neg,ns,-0.000487579,0.00154516,-0.315552508,0.752554516,neg,ns,0.123462034,0.000189754,0.0000531,3.570970661,0.000412111,pos,ns,0.042068376,Zeb2,Zeb2_fiveUTR,2,45113160,45113209,45113160,45113161,50,+,CGCCCTGAGCGTGAGCATCATGTGAAAACGTGATCGCCAAGTTTCTCTCT,5' UTR,2,44983632,45117395,133764,2,Zeb2-212,4186,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219;Zeb2-211;Zeb2-210;Zeb2-205;Zeb2-223;Zeb2-217;Zeb2-225;Zeb2-204;Zeb2-206;Zeb2-230,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;-3084;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,15,158,24136,ENSMUSG00000026872,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
12651,cg17547120,0.0000868,0.0000162,5.362179125,0.000000161,gain,yes,-0.0000401,0.0000275,-1.456793474,0.146185525,neg,ns,0.019376693,0.008058909,2.404381502,0.016786201,pos,ns,1.775047592,-0.000476105,0.000277145,-1.717890379,0.086815179,neg,ns,0.323901345,Herc1,Herc1_Exon,9,66414340,66414389,66414388,66414389,50,+,TTACTTGCTTGCAAGAACCTTGAACTTATTCAAACAAGGTCATCATCACG,"Exon (Herc1-201/Herc1, exon 21 of 78)",9,66350526,66508775,158250,1,Herc1-201,63814,Herc1-201,Herc1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,15,15,235439,ENSMUSG00000038664,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5493,cg26483581,-0.000000624,0.00000284,-0.219576762,0.826345303,loss,ns,0.00000703,0.00000482,1.45669675,0.146212218,pos,ns,0.000507685,0.001413426,0.359187915,0.719699045,pos,ns,0.142849073,-0.0000222,0.0000486,-0.457521071,0.647617047,neg,ns,0.940229437,Pbx3,Pbx3_Intron,2,34107749,34107798,34107749,34107750,50,+,CGAGCAGATGGTAAATCATGAAATTTTATGAAATTATTACGCCGGCGAGG,"Intron (Gm38389-201/Gm38389-201, intron 1 of 1)",2,34172873,34288852,115980,2,Pbx3-210,181054,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,82,18516,ENSMUSG00000038718,conserved gene but different region,2,34107707,34107835,129,*,129,11,0.519379845,1.351428571,0.085271318,5.89E-08,CpGisland,TRUE,U15,NS
14209,cg21690255,-0.000000862,0.000000478,-1.805005175,0.072044085,loss,ns,-0.00000118,0.000000812,-1.456694635,0.146212802,neg,ns,0.000171507,0.000237753,0.721368367,0.4712266,pos,ns,0.326770203,-0.0000124,0.00000818,-1.520868959,0.129312027,neg,ns,0.010932416,Mnt,Mnt_Exon,11,74831354,74831403,74831354,74831355,50,-,CGGCCCGCTTCCTGGAATGGCAAGCGCAGCAACAACAGAGAGCACGTGGT,Promoter (<=1kb),11,74830920,74845725,14806,1,Mnt-201,434,Mettl16-205;Mnt-201;Mnt-203,Mettl16;Mnt;Mnt,60524;0;-4923,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,17,17428,ENSMUSG00000000282,conserved gene and region,11,74831171,74831413,243,*,243,27,0.720164609,0.867168914,0.111111111,3.45E-22,CpGisland,TRUE,U1,Pr-A
25297,cg15597945,0.0000685,0.0000167,4.109527602,0.0000508,gain,ns,-0.0000413,0.0000283,-1.456693874,0.146213012,neg,ns,0.020524197,0.008302011,2.47219582,0.013965123,pos,ns,1.854955234,-0.000490631,0.000285505,-1.718465959,0.086710074,neg,ns,0.271339744,Lrp6,Lrp6_Exon,6,134513374,134513423,134513374,134513375,50,-,CGTCAAGGCAAAAGGATGTGGAAGGGAACCTTTAACCACTGCCTGCCTAT,"Exon (Lrp6-201/Lrp6, exon 4 of 23)",6,134446476,134566913,120438,2,Lrp6-201,53490,Lrp6-201;Lrp6-203,Lrp6;Lrp6,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,11,16974,ENSMUSG00000030201,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11190,cg22550206,-0.00000189,0.0000139,-0.136092334,0.89183662,loss,ns,0.0000344,0.0000236,1.456477659,0.146272696,pos,ns,0.004427248,0.006918453,0.639918884,0.522697983,pos,ns,0.281749176,-0.0000592,0.000237925,-0.24902229,0.803508446,neg,ns,0.779967203,Gm13527,Gm13527_Intergenic_upstream,2,56916426,56916475,56916474,56916475,50,+,TAATATTGATTTCTGTATTTTAGCATTTCACCATAGGTGACAGTCTAGCG,Distal Intergenic,2,57079748,57080438,691,1,Gm13527-201,-163273,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,13,13,227920,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11907,cg25517207,0.0000719,0.0000137,5.252874701,0.000000279,gain,yes,-0.0000339,0.0000233,-1.456244123,0.146337182,neg,ns,0.009616471,0.006816223,1.41082114,0.15930007,pos,ns,0.797784033,-0.000279274,0.000234409,-1.191395886,0.234409557,neg,ns,0.157482705,Tank,Tank_Intergenic_downstream,2,61656429,61656478,61656429,61656430,50,-,CGGCATTCGTGCGGGGCAACTAATTATCCGTCTCATTTGAGAAGAGCAGC,Downstream (2-3kb),2,61643831,61649977,6147,1,Tank-211,12647,Tank-205;Tank-201;Tank-206;Tank-203;Tank-204;Tank-202;Tank-208,Tank;Tank;Tank;Tank;Tank;Tank;Tank,0;0;0;0;0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,16,17,21353,ENSMUSG00000064289,mapped to different genes,2,61656429,61656917,489,*,489,60,0.707566462,0.985887097,0.122699387,1.21E-51,CpGisland,TRUE,U3,Pr-B
13946,cg08294161,-0.00000359,0.00000563,-0.638088422,0.523887187,loss,ns,0.0000139,0.00000957,1.456201063,0.146349074,pos,ns,0.00447752,0.002803127,1.597330299,0.111210895,pos,ns,0.953852664,-0.000178146,0.0000964,-1.848000824,0.065554605,neg,ns,0.919985244,Smad4,Smad4_Exon,18,73658548,73658597,73658596,73658597,50,-,CAACAAAAACAAGAGCTTACAGTAATGTCCGGGATGGGGCGGCATAGGCG,"Exon (Smad4-201/Smad4, exon 7 of 12)",18,73639009,73703780,64772,2,Smad4-201,45183,Smad4-201;Smad4-202;Smad4-205;Smad4-203,Smad4;Smad4;Smad4;Smad4,0;0;0;16521,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,17128,ENSMUSG00000024515,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2335,cg02806971,0.00000797,0.00000247,3.229665462,0.001372335,gain,ns,-0.0000061,0.00000419,-1.456034501,0.146395083,neg,ns,0.000590883,0.001227823,0.48124414,0.630682499,pos,ns,0.20018922,-0.0000544,0.0000422,-1.287264875,0.198962248,neg,ns,0.030565451,Meis1,Meis1_Promoter,11,19019018,19019067,19019066,19019067,50,+,CATTGGGCTGCAGCAAGTAGGCTCCTCGGCAGGGGTGGGTGCGCGAAGCG,Promoter (<=1kb),11,18879817,19018985,139169,2,Meis1-206,-33,Meis1-206;Meis1-202;Meis1-209;Meis1-201;Meis1-208;Meis1-207;Meis1-204;Meis1-205,Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1,0;0;0;0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,8,88,17268,ENSMUSG00000020160,conserved gene but different region,11,19018885,19019116,232,*,232,18,0.590517241,0.911392405,0.077586207,4.67E-12,CpGisland,TRUE,U1,Pr-A
23534,cg12205654,0.0000517,0.00000487,10.6077396,1.24E-22,gain,yes,-0.0000121,0.00000828,-1.455873386,0.146439598,neg,ns,-0.000109475,0.002425811,-0.045129314,0.964033293,neg,ns,0.015907968,0.0000652,0.0000834,0.781464376,0.435125825,pos,ns,0.078582551,Sp8,Sp8_Promoter,12,118840622,118840671,118840670,118840671,50,-,TAATTTCTTCGTGATAGTCAGCTAATTGCTCTGGCAGGTAATTAGAAGCG,Promoter (5-6kb),12,118846329,118852576,6248,1,Sp8-201,-5707,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,27,29,320145,ENSMUSG00000048562,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
7236,cg00549985,-0.0000178,0.0000183,-0.975471152,0.330087178,loss,ns,0.0000451,0.000031,1.455808125,0.146457631,pos,ns,-0.000369316,0.00908565,-0.040648296,0.967602447,neg,ns,0.014303042,0.00026647,0.000312455,0.852826117,0.394414162,pos,ns,0.280528331,Cntfr,Cntfr_Intron,4,41684964,41685013,41684964,41684965,50,+,CGCTTTATCAGGAGACGCTTTTCTGACTTGGCAGCGTTGGGCGTTTTAAA,"Intron (Cntfr-203/Cntfr, intron 2 of 9)",4,41657498,41695442,37945,2,Cntfr-203,10429,Cntfr-203;Cntfr-204;Cntfr-201;Cntfr-202;Cntfr-205,Cntfr;Cntfr;Cntfr;Cntfr;Cntfr,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,12,12804,ENSMUSG00000028444,conserved gene and region,4,41684854,41685032,179,*,179,13,0.581005587,0.865699405,0.072625698,1.77E-08,CpGisland,TRUE,NA,NRS
27111,cg25888520,0.000000853,0.00000162,0.524815676,0.600086436,gain,ns,0.00000402,0.00000276,1.455715482,0.146483235,pos,ns,0.000932961,0.00080871,1.15364105,0.249536023,pos,ns,0.602866751,-0.0000362,0.0000278,-1.301115776,0.194185052,neg,ns,0.965013945,Ralgapb,Ralgapb_Exon,2,158437101,158437150,158437101,158437102,50,+,CGGAGGCACCGGGCTGTTACTGTGAATAAGGCCACCATGAAGACAAGCAC,"Exon (Ralgapb-203/Ralgapb, exon 8 of 30)",2,158409848,158499253,89406,1,Ralgapb-203,27253,Ralgapb-203;Ralgapb-201;Ralgapb-205;Ralgapb-209;Ralgapb-202;Ralgapb-204,Ralgapb;Ralgapb;Ralgapb;Ralgapb;Ralgapb;Ralgapb,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,6,228850,ENSMUSG00000027652,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4202,cg18649537,-0.00000632,0.00000184,-3.432523188,0.000679226,loss,ns,0.00000455,0.00000313,1.45567237,0.146495151,pos,ns,-0.000459674,0.000916394,-0.501611769,0.616296681,neg,ns,0.210210171,-0.0000467,0.0000315,-1.483061505,0.13907398,neg,ns,0.963375362,Gm7729,Gm7729_Intergenic_upstream,18,27497633,27497682,27497681,27497682,50,+,CCCTTTTTCCTAGAGCCTGTAAACCAATAAAGGCTTTATATTAGCTATCG,Distal Intergenic,18,27598644,27599756,1113,1,Gm7729-201,-100962,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,22,665646,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3402,cg21239726,0.000196788,0.0000177,11.12003752,2.13E-24,gain,yes,-0.0000438,0.0000301,-1.45562132,0.146509262,neg,ns,0.019657077,0.008807839,2.23177085,0.026344597,pos,ns,1.579308439,-0.000758977,0.000302901,-2.5056939,0.012733476,neg,ns,0.186921718,Kcnma1,Kcnma1_Exon,14,24003888,24003937,24003888,24003889,50,+,CGCACGGCACCTCCATGGTCACCGGGATGATGAGCGCATCCATCTTGGGC,Promoter (<=1kb),14,23299891,24003930,704040,2,Kcnma1-211,0,Kcnma1-205;Kcnma1-212;Kcnma1-211;Kcnma1-229;Kcnma1-234;Kcnma1-223;Kcnma1-214;Kcnma1-216;Kcnma1-219;Kcnma1-220;Kcnma1-224;Kcnma1-233;Kcnma1-236;Kcnma1-237;Kcnma1-213;Kcnma1-228;Kcnma1-221;Kcnma1-225;Kcnma1-226;Kcnma1-230;Kcnma1-235;Kcnma1-238;Kcnma1-215,Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,16,41,16531,ENSMUSG00000063142,conserved gene and region,14,24003872,24003953,82,*,82,9,0.658536585,1.012345679,0.109756098,0.000000162,CpGisland,TRUE,U3,Pr-B
22116,cg01029325,-0.00000172,0.00000329,-0.522486403,0.60170489,loss,ns,0.00000813,0.00000559,1.455464777,0.146552539,pos,ns,0.003884111,0.001637167,2.37245807,0.018280222,pos,ns,1.738018539,-0.000118862,0.0000563,-2.111145274,0.035560113,neg,ns,0.932370489,Eif4g2,Eif4g2_Exon,7,111078290,111078339,111078290,111078291,50,+,CGGTTTTCAAATTCATCTTGTAATTTGGAAATTAGGAGGCGTCTGAATGT,"Exon (Eif4g2-213/Eif4g2, exon 7 of 22)",7,111067750,111083030,15281,2,Eif4g2-213,4691,Eif4g2-213;Eif4g2-206;Eif4g2-208;Eif4g2-214;Eif4g2-202;Eif4g2-204;Eif4g2-211;Eif4g2-210;Eif4g2-209;Eif4g2-203;Eif4g2-201;Eif4g2-212;Eif4g2-205,Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2,0;0;0;-4041;-3591;-2905;-2081;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,20,22,13690,ENSMUSG00000005610,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
532,cg03357866,0.0000774,0.00000598,12.94804114,6.02E-31,gain,yes,-0.0000148,0.0000102,-1.455461591,0.14655342,neg,ns,0.004753712,0.00297535,1.597698654,0.111128827,pos,ns,0.954173269,-0.0000593,0.000102322,-0.579652063,0.562570289,neg,ns,0.116382014,Dlx6,Dlx6_Intron,6,6849990,6850039,6849990,6849991,50,-,CGCAATTTTCTATCATCAAGGATAAATGGCATCGAACAGAACATTCTGAT,"Intron (Dlx6os1-202/Dlx6os1-202, intron 1 of 1)",6,6863334,6868568,5235,1,Dlx6-202,-13344,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,36,13396,ENSMUSG00000029754,mapped to different genes,6,6849927,6850023,97,*,97,10,0.567010309,1.286472149,0.103092784,4.63E-08,CpGisland,TRUE,U13,Hc-P
19351,cg26348411,0.000284729,0.000022,12.91324111,8.08E-31,gain,yes,-0.0000545,0.0000375,-1.45546016,0.146553816,neg,ns,-0.004568989,0.010974224,-0.416338224,0.677450627,neg,ns,0.169122351,0.000239391,0.000377403,0.634312147,0.526344931,pos,ns,0.301614958,Dnajc22,Dnajc22_Promoter,15,99093652,99093701,99093652,99093653,50,-,CGGCTGTCGGTCCCGCCATCCATCCTGTCCGCCGGCAATTAGGCGGCCAG,Promoter (<=1kb),15,99093170,99100917,7748,1,Dnajc22-202,482,Dnajc22-202,Dnajc22,0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,6,8,72778,ENSMUSG00000038009,conserved gene and region,15,99093593,99093959,367,*,367,36,0.697547684,0.811348563,0.098092643,2.41E-27,CpGisland,TRUE,U3,Pr-B
9476,cg02554923,-0.0000601,0.0000119,-5.072045103,0.000000679,loss,yes,0.0000293,0.0000201,1.455425694,0.146563346,pos,ns,-0.00705896,0.00589832,-1.196774741,0.232308799,neg,ns,0.63393434,0.000148441,0.000202843,0.731801587,0.464842529,pos,ns,0.778570779,AC124542.1,AC124542.1_Intergenic_downstream,12,48826463,48826512,48826511,48826512,50,+,AAGTCCATAACGAGATAGATCAATCAGATTGTTTTTATTGGTCTACTGCG,Distal Intergenic,12,48903821,48906044,2224,2,AC124542.1-201,79532,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16067,cg02032554,-0.000000668,0.00000208,-0.320432324,0.748856507,loss,ns,0.00000515,0.00000354,1.455398278,0.146570926,pos,ns,0.004212512,0.001037542,4.060088623,0.0000622,pos,ns,4.206381817,-0.00010833,0.0000357,-3.036069365,0.002600177,neg,ns,0.951683191,Acaca,Acaca_Intron,11,84349889,84349938,84349889,84349890,50,+,CGGTGGAAATAATAAGATATAAACCACGAGGTTGTTATTTGCATAGAAAT,"Intron (Acaca-202/Acaca, intron 45 of 55)",11,84173122,84401651,228530,1,Acaca-202,176767,Acaca-202;Acaca-201,Acaca;Acaca,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,28,28,107476,ENSMUSG00000020532,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12765,cg20672483,0.0000621,0.00000624,9.94009567,2.17E-20,gain,yes,-0.0000154,0.0000106,-1.455198914,0.146626061,neg,ns,0.010503825,0.003107826,3.379798003,0.000818158,pos,ns,3.087162863,-0.000115068,0.000106878,-1.076627639,0.282483785,neg,ns,0.135880173,Phox2b,Phox2b_fiveUTR,5,67099149,67099198,67099197,67099198,50,+,TGGCTCTTTCCACTTGGACAATAGCAAAGCGGTTGGTCTTATTGCTGGCG,Promoter (<=1kb),5,67094399,67099301,4903,2,Phox2b-201,103,Phox2b-201;Phox2b-202,Phox2b;Phox2b,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,28,18935,ENSMUSG00000012520,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
5492,cg18935607,-0.000000288,0.00000116,-0.248613058,0.803824727,loss,ns,0.00000286,0.00000197,1.455161947,0.146636286,pos,ns,0.000433593,0.000576216,0.752483232,0.452331508,pos,ns,0.34454316,-0.00000439,0.0000198,-0.221383021,0.824939965,neg,ns,0.97821491,Pbx3,Pbx3_Intron,2,34107744,34107793,34107744,34107745,50,-,CGGCGCGAGCAGATGGTAAATCATGAAATTTTATGAAATTATTACGCCGG,"Intron (Gm38389-201/Gm38389-201, intron 1 of 1)",2,34172873,34288852,115980,2,Pbx3-210,181108,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,82,18516,ENSMUSG00000038718,conserved gene but different region,2,34107707,34107835,129,*,129,11,0.519379845,1.351428571,0.085271318,5.89E-08,CpGisland,TRUE,U15,NS
11838,cg00199899,-0.00000463,0.00000149,-3.114855871,0.002012352,loss,ns,0.00000367,0.00000252,1.455118303,0.146648359,pos,ns,0.002139807,0.000739408,2.893946478,0.004074062,pos,ns,2.389972347,-0.0000288,0.0000254,-1.134103544,0.257627345,neg,ns,0.96790215,Sgpl1,Sgpl1_Exon,10,61103136,61103185,61103136,61103137,50,-,CGAGCAGTTTTGATGATCTGTTTGGTAGCTTCAACATAGCCGTTCTCACC,"Exon (Sgpl1-202/Sgpl1, exon 12 of 15)",10,61098642,61147644,49003,2,Sgpl1-202,44459,Sgpl1-202;Sgpl1-201;Sgpl1-208;Sgpl1-207;Sgpl1-209,Sgpl1;Sgpl1;Sgpl1;Sgpl1;Sgpl1,0;0;0;-11;2292,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,20397,ENSMUSG00000020097,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26563,cg19895272,0.0000815,0.0000165,4.924328656,0.00000138,gain,yes,-0.0000409,0.0000281,-1.455060495,0.146664351,neg,ns,0.011923268,0.008234551,1.44795606,0.148639932,pos,ns,0.827864502,-0.00013177,0.000283186,-0.465312452,0.642034423,neg,ns,0.551597315,Casz1,Casz1_Intron,4,148921851,148921900,148921851,148921852,50,-,CGACCTCTATTGAGGGACAAACATAATCAGCACTGACGCAAATTAGATGG,"Intron (Casz1-201/Casz1, intron 4 of 15)",4,148804429,148945129,140701,1,Casz1-201,117422,Casz1-201;Casz1-202;Casz1-206,Casz1;Casz1;Casz1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,94,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26460,cg22414621,-0.00000801,0.00000737,-1.086459832,0.278119676,loss,ns,0.0000182,0.0000125,1.454618884,0.146786562,pos,ns,0.011658088,0.003669098,3.177371542,0.001635978,pos,ns,2.786222656,-0.000562126,0.00012618,-4.454952734,0.0000117,neg,ns,0.894488468,Angptl7,Angptl7_Exon,4,148496270,148496319,148496270,148496271,50,+,CGGTAGTACACTCCATTGAGGTTGGAGTCTGTGCAGCAGTTGTACCAGTA,"Exon (Angptl7-201/Angptl7, exon 5 of 5)",4,148495183,148500460,5278,2,Angptl7-201,4141,Angptl7-201;Mtor-202,Angptl7;Mtor,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,654812,ENSMUSG00000028989,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23799,cg12734405,-0.00000057,0.00000316,-0.180668918,0.856745512,loss,ns,0.0000078,0.00000536,1.454617066,0.146787065,pos,ns,0.004482662,0.001570644,2.854028744,0.004607558,pos,ns,2.33652918,-0.000113302,0.000054,-2.09762102,0.036748115,neg,ns,0.933192927,Mbnl2,Mbnl2_Exon,14,120404663,120404712,120404663,120404664,50,-,CGCCACTGTCTCTGCAGCAACAACTCCTGCAACAAGTGTCCCCTTCGCAG,"Exon (Mbnl2-201/Mbnl2, exon 8 of 9)",14,120275669,120431697,156029,1,Mbnl2-201,128994,Mbnl2-201;Mbnl2-204;Mbnl2-202;Mbnl2-203;Mbnl2-208;Mbnl2-210;Mbnl2-205,Mbnl2;Mbnl2;Mbnl2;Mbnl2;Mbnl2;Mbnl2;Mbnl2,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,16,105559,ENSMUSG00000022139,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9512,cg12643514,-0.000000716,0.00000105,-0.679472843,0.497345335,loss,ns,0.0000026,0.00000179,1.454602394,0.146791127,pos,ns,0.000729661,0.000524318,1.391638459,0.165029646,pos,ns,0.782438033,-0.0000203,0.000018,-1.126745302,0.260721611,neg,ns,0.967999923,Tenm3,Tenm3_Intergenic_upstream,8,49042770,49042819,49042818,49042819,50,-,ATTGCTGAGCAAGAAGCAATTACTTCAGTTTAAAATATTAATATGCACCG,Distal Intergenic,8,48646261,48843951,197691,2,Tenm3-207,-198868,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,39,23965,ENSMUSG00000031561,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19327,cg04888180,0.00000443,0.00000488,0.907315803,0.364944561,gain,ns,0.0000121,0.00000829,1.454546808,0.146806515,pos,ns,0.005628134,0.002429002,2.317055611,0.021152046,pos,ns,1.674647621,-0.000183714,0.0000835,-2.199289029,0.028595514,neg,ns,0.901969618,Atp2b1,Atp2b1_Exon,10,99014504,99014553,99014552,99014553,50,+,CTCACAGATGACAACTTTACAAGCATTGTTAAAGCAGTTATGTGGGGACG,"Exon (Atp2b1-201/Atp2b1, exon 16 of 21)",10,98915152,99026143,110992,1,Atp2b1-201,99352,Atp2b1-201;Atp2b1-206;Atp2b1-202;Atp2b1-210;Atp2b1-205;Atp2b1-209;Atp2b1-203,Atp2b1;Atp2b1;Atp2b1;Atp2b1;Atp2b1;Atp2b1;Atp2b1,0;0;-340;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,7,67972,ENSMUSG00000019943,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10976,cg21977667,0.0000194,0.0000132,1.471556627,0.142155042,gain,ns,-0.0000325,0.0000223,-1.454536814,0.146809282,neg,ns,-0.005982381,0.006546893,-0.913774021,0.361545744,neg,ns,0.441836746,0.000241683,0.000225147,1.0734468,0.283905564,pos,ns,0.60227149,Gm6944,Gm6944_Intron,18,55944633,55944682,55944681,55944682,50,-,CTCAAATTAATTCAGGTGCAGCAAACAATTATATGAAATAGGAACACTCG,"Intron (Gm4230-201/Gm4230-201, intron 1 of 1)",18,55972286,55973291,1006,1,Gm6944-201,-27653,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,2,629057,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7203,cg16642472,0.0000468,0.00000547,8.553033875,5.60E-16,gain,yes,-0.0000135,0.00000929,-1.454316729,0.146870225,neg,ns,0.023362413,0.002722833,8.580184716,4.63E-16,pos,yes,15.33486849,-0.000694739,0.0000936,-7.419416563,1.14E-12,neg,yes,0.91267706,Jade1,Jade1_Exon,3,41609806,41609855,41609806,41609807,50,+,CGGAACCTCACTTACATGGTGACCCGCAGGGAAAAGATTAAACGGTCTGT,"Exon (Jade1-201/Jade1, exon 10 of 11)",3,41555731,41616864,61134,1,Jade1-201,54075,Jade1-201;Jade1-202;Jade1-204;Jade1-203;Jade1-206;Jade1-207,Jade1;Jade1;Jade1;Jade1;Jade1;Jade1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,16,269424,ENSMUSG00000025764,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22683,cg15026078,-0.000000356,0.00000178,-0.200318411,0.841362915,loss,ns,0.00000439,0.00000302,1.454215557,0.146898246,pos,ns,0.002238818,0.000884373,2.531530749,0.011850511,pos,ns,1.926262931,-0.0000439,0.0000304,-1.442469487,0.150179547,neg,ns,0.032441454,Maf,Maf_Exon,8,115705930,115705979,115705930,115705931,50,+,CGTGTCTCTGCTGCACCCTCTTGAAGCGGCAGGACTGGGCATAGCCGCGG,"Exon (Maf-201/Maf, exon 1 of 3)",8,115682942,115707096,24155,2,Maf-201,1117,Maf-201;Maf-202,Maf;Maf,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,23,17132,ENSMUSG00000055435,conserved gene and region,8,115705919,115706789,871,*,871,113,0.732491389,0.967968135,0.129735936,6.29E-100,CpGisland,TRUE,U1,Pr-A
8358,cg26236652,0.0000627,0.00000823,7.610955215,3.30E-13,gain,yes,-0.0000203,0.000014,-1.453275732,0.147158744,neg,ns,0.00826533,0.004097453,2.017187293,0.044537608,pos,ns,1.351273109,-0.000118636,0.000140911,-0.841919418,0.400482083,neg,ns,0.390565108,Zeb2,Zeb2_Intron,2,45044962,45045011,45045010,45045011,50,+,AACTCTCACCCCCCTGTCTTTTGTTTTTCCTTCCAGCCTTTTTCCTGTCG,"Intron (Zeb2-212/Zeb2, intron 3 of 10)",2,44983632,45117395,133764,2,Zeb2-212,72384,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-218;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24990,cg17633606,-0.0000029,0.0000112,-0.258133074,0.796475493,loss,ns,0.0000277,0.0000191,1.453236275,0.147169689,pos,ns,-0.002092926,0.00559296,-0.374207199,0.708505994,neg,ns,0.149656472,0.000405828,0.000192341,2.109935225,0.035665049,pos,ns,0.547111674,Lef1,Lef1_Intron,3,131137227,131137276,131137275,131137276,50,+,GTTGAGAGCATAAAGGCTTTCCATATTCCCAGGGCGCACAACTGCTTGCG,"Intron (Lef1-201/Lef1, intron 3 of 11)",3,131110471,131224356,113886,1,Lef1-201,26756,Lef1-201;Lef1-202;Lef1-204;Lef1-203;Lef1-205;Lef1-208;Lef1-207,Lef1;Lef1;Lef1;Lef1;Lef1;Lef1;Lef1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,9,16842,ENSMUSG00000027985,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1278,cg25875397,-0.00000689,0.00000547,-1.259865285,0.208665594,loss,ns,-0.0000135,0.0000093,-1.45307488,0.147214462,neg,ns,-0.004233646,0.0027237,-1.554372984,0.121115762,neg,ns,0.916799335,-0.0000454,0.0000937,-0.484329944,0.628493727,neg,ns,0.881948689,Zfr,Zfr_Exon,15,12170777,12170826,12170825,12170826,50,+,CCATTCCTCACTGCATTTTGCCAATTCAATCCATTTTAGATGTAACCTCG,"Exon (Zfr-201/Zfr, exon 16 of 20)",15,12117831,12185683,67853,1,Zfr-201,52946,Zfr-201;Zfr-207;Zfr-208;Zfr-209;Zfr-206,Zfr;Zfr;Zfr;Zfr;Zfr,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,12,22763,ENSMUSG00000022201,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18043,cg24113707,-0.00000107,0.00000114,-0.937158657,0.349406479,loss,ns,0.00000281,0.00000193,1.453004478,0.147233996,pos,ns,0.001700827,0.000566576,3.001937131,0.002900784,pos,ns,2.537484552,-0.0000321,0.0000195,-1.646683821,0.100636369,neg,ns,0.967739927,Pola1,Pola1_Intron,X,93408394,93408443,93408442,93408443,50,-,CCAGCTGTGAAATTGTTTCTTGAGATACTGCCCTCTTCATAACATTTGCG,"Intron (Pola1-201/Pola1, intron 35 of 36)",20,93304767,93632155,327389,2,Pola1-201,223712,Pola1-201,Pola1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,59,62,18968,ENSMUSG00000006678,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4283,cg12383724,0.0000089,0.00000266,3.345835412,0.000921226,gain,ns,-0.00000656,0.00000452,-1.452971184,0.147243234,neg,ns,-0.003688499,0.001323198,-2.787564203,0.005638408,neg,ns,2.248843533,0.0000864,0.0000455,1.898315495,0.058583132,pos,ns,0.930473353,Dyrk1b,Dyrk1b_fiveUTR,7,28181592,28181641,28181592,28181593,50,-,CGGCCCTCTGAGCCCACCATGGCCGTCCCACCGGGCCATGGTCCCTTCTC,5' UTR,7,28179469,28187294,7826,1,Dyrk1b-201,2123,Dyrk1b-201;Dyrk1b-203;Dyrk1b-202;Fbl-201;Fbl-205,Dyrk1b;Dyrk1b;Dyrk1b;Fbl;Fbl,0;0;0;11882;6598,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,8,13549,ENSMUSG00000002409,conserved gene and region,7,28181516,28181651,136,*,136,12,0.735294118,0.665850673,0.088235294,8.04E-09,CpGisland,TRUE,NA,NRS
11958,cg10635779,0.0000523,0.00000405,12.90707993,8.51E-31,gain,yes,-0.00001,0.00000688,-1.452409153,0.147399255,neg,ns,0.003028116,0.00201649,1.501676911,0.134198452,pos,ns,0.872252493,-0.0000253,0.0000693,-0.365474541,0.715006452,neg,ns,0.120124633,Tbr1,Tbr1_Exon,2,61804743,61804792,61804791,61804792,50,-,GCTCTCCAAGAAATTTCTCAATGTGAGCAGCAGCTACCCACATTCAGGCG,Promoter (<=1kb),2,61804453,61814114,9662,1,Tbr1-201,290,Psmd14-201;Psmd14-208;Psmd14-202;Tbr1-204;Tbr1-201;Tbr1-202;Tbr1-203,Psmd14;Psmd14;Psmd14;Tbr1;Tbr1;Tbr1;Tbr1,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,Exon,24,27,21375,ENSMUSG00000035033,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
22185,cg19217984,0.0000408,0.00000467,8.750139853,1.39E-16,gain,yes,-0.0000115,0.00000793,-1.452352864,0.147414888,neg,ns,0.004345176,0.002322148,1.871188287,0.062260783,pos,ns,1.205785418,-0.0000297,0.0000799,-0.372201121,0.709997421,neg,ns,0.052453862,Slitrk5,Slitrk5_Exon,14,111681264,111681313,111681264,111681265,50,+,CGTAGAGGATTACAAAGACCTGCACGAGCTCAAGGTCACCTACAGCAGCA,"Exon (Slitrk5-201/Slitrk5, exon 2 of 2)",14,111675097,111683141,8045,1,Slitrk5-201,6167,Slitrk5-201;Slitrk5-202,Slitrk5;Slitrk5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,10,75409,ENSMUSG00000033214,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
22068,cg02332525,0.000137595,0.0000126,10.93535334,9.31E-24,gain,yes,-0.000031,0.0000214,-1.452143168,0.147473137,neg,ns,0.013639034,0.006262472,2.177899396,0.030167052,pos,ns,1.520467122,-0.000392038,0.000215366,-1.820333806,0.069672318,neg,ns,0.115712046,Grm7,Grm7_Exon,6,110645897,110645946,110645945,110645946,50,-,CCTGACTTTGATGAAGTTCCCCTGCTGCGTGCTGGAGGTGCTCCTGTGCG,Promoter (<=1kb),6,110645581,111497090,851510,1,Grm7-204,316,Grm7-204;Grm7-201;Grm7-202,Grm7;Grm7;Grm7,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,6,108073,ENSMUSG00000056755,conserved gene and region,6,110645761,110646072,312,*,312,31,0.705128205,0.79940491,0.099358974,8.47E-24,CpGisland,TRUE,U13,Hc-P
9309,cg00573041,0.0000496,0.00000563,8.807250447,9.27E-17,gain,yes,-0.0000139,0.00000957,-1.451891487,0.147543072,neg,ns,0.003281906,0.002802686,1.170985765,0.242503808,pos,ns,0.615281437,-0.000204945,0.0000964,-2.126331006,0.03426555,neg,ns,0.807358135,Nr4a3,Nr4a3_Exon,4,48056539,48056588,48056539,48056540,50,+,CGTACAGATAGTCTGAAAGGGAGGAGAGGTCGTCTGCCTTCCAAACCAAA,"Exon (Nr4a3-201/Nr4a3, exon 5 of 8)",4,48045153,48086445,41293,1,Nr4a3-201,11386,Nr4a3-201;Nr4a3-203;Nr4a3-202,Nr4a3;Nr4a3;Nr4a3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,20,18124,ENSMUSG00000028341,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5691,cg23754860,0.000000002,0.0000115,0.000174179,0.999861137,gain,ns,-0.0000283,0.0000195,-1.451845052,0.147555978,neg,ns,0.0085031,0.005717952,1.487088389,0.138007854,pos,ns,0.860096198,-0.000822829,0.00019664,-4.184445712,0.0000373,neg,ns,0.209046279,Ldb3,Ldb3_Exon,14,34561813,34561862,34561861,34561862,50,-,GAAAGGCCATGGTGCCAGTTGCGCAATTTGGCAAAACGTGGGCTGTTACG,"Exon (Ldb3-207/Ldb3, exon 10 of 10)",14,34526603,34588664,62062,2,Ldb3-201,26802,Ldb3-201;Ldb3-205;Ldb3-202;Ldb3-204;Ldb3-208;Ldb3-207;Ldb3-203,Ldb3;Ldb3;Ldb3;Ldb3;Ldb3;Ldb3;Ldb3,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,24131,ENSMUSG00000021798,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22077,cg23946346,-0.00000547,0.00000197,-2.778839751,0.005788231,loss,ns,0.00000485,0.00000334,1.451777946,0.14757463,pos,ns,0.001730659,0.000978971,1.767833621,0.078072357,pos,ns,1.107502709,-0.0000479,0.0000337,-1.421285348,0.156238986,neg,ns,0.038291959,Wdr20,Wdr20_Exon,12,110738214,110738263,110738214,110738215,50,-,CGACCGCCTCTGCTTCAATGTGGGCCGGGAGCTGTACTTCTATATCTACA,Promoter (<=1kb),12,110737944,110804238,66295,1,Wdr20-205,270,Wdr20-205;Wdr20-204;Wdr20-203;Wdr20-201;Wdr20-202;Wdr20-207,Wdr20;Wdr20;Wdr20;Wdr20;Wdr20;Wdr20,0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,8,69641,ENSMUSG00000037957,conserved gene and region,12,110737489,110738785,1297,*,1297,129,0.68080185,0.867167335,0.099460293,3.23E-97,CpGisland,TRUE,U1,Pr-A
21002,cg11301802,-0.0000209,0.00000792,-2.633668865,0.008870496,loss,ns,0.0000195,0.0000135,1.451499526,0.147652038,pos,ns,0.004064344,0.003940477,1.031434601,0.303141085,pos,ns,0.518355199,-0.000233267,0.000135513,-1.721370302,0.086181295,neg,ns,0.820282704,Vrk1,Vrk1_Intergenic_upstream,12,105960102,105960151,105960150,105960151,50,+,TTCGCAGTTAACAATTAGCAATTAAACCTGCAGTGTCTACAAAGAGCACG,Distal Intergenic,12,106010228,106075220,64993,1,Vrk1-202,-50077,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,37,22367,ENSMUSG00000021115,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20556,cg05958112,0.0000172,0.0000039,4.406632578,0.0000145,gain,ns,-0.00000962,0.00000663,-1.451321227,0.147701626,neg,ns,0.004520786,0.001942571,2.327217893,0.02059744,pos,ns,1.686186755,-0.000137359,0.0000668,-2.056120144,0.040607904,neg,ns,0.897348502,Gm26992,Gm26992_Exon,X,103469693,103469742,103469741,103469742,50,-,TGAGCTTTTCCCCTGGAGGATCCTCATGCCCCATCTCCACCTAGGGATCG,"Exon (Xist-201/Xist-201, exon 4 of 7)",20,103422010,103481705,59696,1,Gm26992-201,47683,Gm26992-201,Gm26992,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3726,cg25687304,0.000036,0.000012,2.984845191,0.003063003,gain,ns,0.0000297,0.0000205,1.45127135,0.147715499,pos,ns,-0.000423564,0.005996501,-0.070635199,0.943733641,neg,ns,0.025150564,0.0000876,0.000206219,0.425024651,0.671113569,pos,ns,0.815095371,Pou2f2,Pou2f2_Intron,7,25163696,25163745,25163744,25163745,50,-,ACAATTAGCCGCGCTGAGTGTTGAACACGGTGGCGACACGGCATTAACCG,"Intron (Pou2f2-208/Pou2f2, intron 1 of 4)",7,25120618,25179726,59109,2,Pou2f2-208,15981,Pou2f2-208,Pou2f2,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,29,18987,ENSMUSG00000008496,conserved gene and region,7,25163636,25163773,138,*,138,15,0.543478261,1.493506494,0.108695652,2.55E-12,CpGisland,TRUE,U11,Tr-P
18502,cg20049544,-0.0000257,0.0000063,-4.086823486,0.0000558,loss,ns,-0.0000155,0.0000107,-1.451266815,0.147716761,neg,ns,-0.005549825,0.003133423,-1.771170032,0.077514939,neg,ns,1.110614589,-0.0000241,0.000107758,-0.223959256,0.822936533,neg,ns,0.870029345,Cnot6l,Cnot6l_Exon,5,96134040,96134089,96134088,96134089,50,-,TTTTTCCCATTGGCTACCTCCTCTGCTGACATGATGGTATAAATTCTGCG,"Exon (Cnot6l-210/Cnot6l, exon 2 of 12)",5,96070333,96161990,91658,2,Cnot6l-210,27901,Cnot6l-210;Cnot6l-201;Cnot6l-202;Cnot6l-203;Cnot6l-204;Cnot6l-207;Cnot6l-206;Cnot6l-209,Cnot6l;Cnot6l;Cnot6l;Cnot6l;Cnot6l;Cnot6l;Cnot6l;Cnot6l,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,13,231464,ENSMUSG00000034724,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17611,cg04941359,-0.0000054,0.00000417,-1.296215058,0.195865552,loss,ns,0.0000103,0.00000708,1.451010703,0.147788018,pos,ns,0.002348814,0.002074483,1.132240527,0.258408345,pos,ns,0.587693466,-0.000109415,0.0000713,-1.533689658,0.126125923,neg,ns,0.897277532,Elavl2,Elavl2_threeUTR,4,91252593,91252642,91252641,91252642,50,-,TGGCAAGGTACTGCTTTACGAAAAGTTCTCCAGTATTCTTACAATAAGCG,3' UTR,4,91250763,91372034,121272,2,Elavl2-204,119392,Elavl2-204;Elavl2-201;Elavl2-207;Elavl2-208;Elavl2-202;Elavl2-209;Elavl2-210;Elavl2-206;Elavl2-203;Elavl2-205,Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,31,15569,ENSMUSG00000008489,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25383,cg20589055,-0.000077,0.0000262,-2.94233902,0.003503109,loss,ns,-0.0000645,0.0000445,-1.450957818,0.147802735,neg,ns,0.065341897,0.013023493,5.017232751,0.000000885,pos,ns,6.053201192,-0.000038,0.000447877,-0.084792958,0.932480725,neg,ns,0.092096528,Id3,Id3_Promoter,4,136143316,136143365,136143364,136143365,50,-,ACGCCAGTGAGTCTGGAGGTCAGACGAACAGCAAATTGGGGAACAAGGCG,Promoter (<=1kb),4,136143497,136145392,1896,1,Id3-201,-181,Id3-201;Id3-203;Id3-202,Id3;Id3;Id3,-132;-499;-1609,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,9,9,15903,ENSMUSG00000007872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6388,cg22557786,-0.0000147,0.00000748,-1.961088845,0.050763614,loss,ns,0.0000184,0.0000127,1.450950704,0.147804715,pos,ns,0.01290918,0.003720788,3.469475088,0.00059535,pos,ns,3.225227971,-0.000479455,0.000127958,-3.74698729,0.000213405,neg,ns,0.862576813,Cpeb3,Cpeb3_Exon,19,37105799,37105848,37105799,37105800,50,+,CGCCCATAGCTCCTGGCTGCATGTAAACATAGAAGAAAACCATGGGTATT,"Exon (Cpeb3-201/Cpeb3, exon 5 of 11)",19,37021291,37207462,186172,2,Cpeb3-201,101614,Cpeb3-201;Cpeb3-203;Cpeb3-212;Cpeb3-210;Cpeb3-204;Cpeb3-208;Cpeb3-202;Cpeb3-205,Cpeb3;Cpeb3;Cpeb3;Cpeb3;Cpeb3;Cpeb3;Cpeb3;Cpeb3,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,9,208922,ENSMUSG00000039652,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26534,cg08072531,-0.000008,0.00000728,-1.098559809,0.272812591,loss,ns,0.0000179,0.0000124,1.450719175,0.14786916,pos,ns,0.002268339,0.003623243,0.626052178,0.531741393,pos,ns,0.274299531,-0.000287333,0.000124603,-2.305986084,0.021770998,neg,ns,0.590609941,Adgrl2,Adgrl2_Exon,3,148890454,148890503,148890502,148890503,50,-,GTATTCTCCATCTGAAATGGGTCAGCATCACAAATCTTGTCATCCGTCCG,"Exon (Adgrl2-202/Adgrl2, exon 2 of 23)",3,148815586,148954635,139050,2,Adgrl2-202,64132,Adgrl2-202;Adgrl2-208;Adgrl2-205;Adgrl2-217;Adgrl2-220;Adgrl2-215;Adgrl2-204;Adgrl2-212;Adgrl2-213;Adgrl2-214;Adgrl2-201,Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,10,99633,ENSMUSG00000028184,conserved gene and region,3,148890482,148890600,119,*,119,12,0.537815126,1.464615385,0.100840336,1.65E-09,CpGisland,TRUE,U11,Tr-P
9850,cg25584626,0.000138169,0.0000134,10.32564103,1.12E-21,gain,yes,-0.000033,0.0000227,-1.450676411,0.147881066,neg,ns,0.015709606,0.006659953,2.358816217,0.018953545,pos,ns,1.722309542,-0.000575438,0.000229035,-2.512444091,0.012497317,neg,ns,0.096263152,Prr16,Prr16_Exon,18,51117983,51118032,51117983,51117984,50,-,CGCCGGCAGCCTCCAAAACCAAGGTGAAGGAACAGATCAAGATCATCGTG,Promoter (<=1kb),18,51117733,51305190,187458,1,Prr16-201,250,Prr16-201;Prr16-202,Prr16;Prr16,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,71373,ENSMUSG00000073565,conserved gene but different region,18,51117599,51117987,389,*,389,54,0.763496144,0.953431373,0.138817481,6.87E-50,CpGisland,TRUE,U1,Pr-A
9702,cg08642994,0.0000603,0.00000702,8.591283218,4.28E-16,gain,yes,-0.0000173,0.0000119,-1.450574037,0.14790957,neg,ns,0.010985475,0.003493675,3.144389594,0.00182557,pos,ns,2.738601607,-0.000274265,0.000120147,-2.282739362,0.023122597,neg,ns,0.083569792,Gm7481,Gm7481_Exon,12,50120699,50120748,50120699,50120700,50,-,CGTCAACCCATTAAGGTAATTATATGGAACCTGTGCCGTATAACAGCTTA,"Exon (Gm40418-201/Gm40418-201, exon 1 of 3)",12,49840757,49841751,995,2,Gm7481-201,-278997,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,37,665077,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10045,cg11247417,0.0000128,0.00000191,6.681692446,1.10E-10,gain,yes,-0.00000471,0.00000324,-1.450348073,0.1479725,neg,ns,-0.001959244,0.000950667,-2.06091378,0.040145117,neg,ns,1.39636727,0.000101797,0.0000327,3.11367946,0.002020145,pos,ns,0.017520289,Maml3,Maml3_Exon,3,52103834,52103883,52103882,52103883,50,-,GCTCCAGCTGCTCCACCTGAGCCTGCTGGTACCTGTTCTCGCAGTTGACG,"Exon (Maml3-202/Maml3, exon 1 of 5)",3,51685907,52105076,419170,2,Maml3-202,1193,Maml3-202,Maml3,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,32,433586,ENSMUSG00000061143,conserved gene and region,3,52103873,52104066,194,*,194,28,0.742268041,1.048041675,0.144329897,1.36E-26,CpGisland,TRUE,U1,Pr-A
24874,cg17892435,0.0000172,0.00000366,4.712369383,0.0000037,gain,ns,0.00000901,0.00000621,1.450318832,0.147980646,pos,ns,0.00214256,0.001819474,1.177571363,0.239870785,pos,ns,0.620022643,-0.0000441,0.0000626,-0.704358879,0.481738094,neg,ns,0.081171,Pitx2,Pitx2_Intron,3,129202482,129202531,129202530,129202531,50,-,AACATTTGAAGTCTGGACTAATAAAATCCCATCTGTGTTACTTCATATCG,"Intron (Pitx2-207/Pitx2, intron 1 of 4)",3,129199878,129219590,19713,1,Pitx2-207,2604,Pitx2-207;Pitx2-201;Pitx2-203;Pitx2-205;Pitx2-204,Pitx2;Pitx2;Pitx2;Pitx2;Pitx2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,24,18741,ENSMUSG00000028023,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
230,cg26357354,-0.00000047,0.000000567,-0.828045321,0.408281849,loss,ns,-0.0000014,0.000000963,-1.450183165,0.14801844,neg,ns,-0.000656067,0.00028225,-2.324420979,0.020748796,neg,ns,1.683007098,0.0000125,0.00000971,1.287921616,0.198733805,pos,ns,0.993093063,Gm21992,Gm21992_threeUTR,19,4801700,4801749,4801748,4801749,50,-,ACGGTAATCCAGCGAGGACTTTGTCGGCGAGCGGCGGAACGAAAGCTGCG,3' UTR,19,4742913,4811612,68700,2,Gm21992-203,9863,Gm21992-203;Gm21992-206;Gm21992-204;Gm21992-201;Gm21992-205;Gm21992-202;Rbm14-201;Rbm14-202;Rbm14-203,Gm21992;Gm21992;Gm21992;Gm21992;Gm21992;Gm21992;Rbm14;Rbm14;Rbm14,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,21,48,102902673,ENSMUSG00000096370,mapped to different genes,19,4801605,4801812,208,*,208,24,0.586538462,1.371428571,0.115384615,3.42E-20,CpGisland,TRUE,U10,Tr-S
8684,cg03951988,-0.00000214,0.0000165,-0.129865815,0.896756815,loss,ns,0.0000406,0.000028,1.44972977,0.148144802,pos,ns,0.01597145,0.008206008,1.946311687,0.052520552,pos,ns,1.279670714,-0.000500782,0.000282204,-1.7745394,0.076955326,neg,ns,0.854923832,Tmem151b,Tmem151b_Exon,17,45547023,45547072,45547071,45547072,50,-,TCATGGTACATGAGGCTGTTGCCCTGGTAGGCGCTGCTGAAGGTGAGGCG,"Exon (Tmem151b-201/Tmem151b, exon 2 of 3)",17,45541952,45549677,7726,2,Tmem151b-201,2605,Tcte1-201;Tcte1-202;Tmem151b-201,Tcte1;Tcte1;Tmem151b,23589;13970;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,210573,ENSMUSG00000096847,mapped to different genes,17,45546873,45547118,246,*,246,17,0.650406504,0.657133878,0.069105691,1.34E-10,CpGisland,TRUE,U13,Hc-P
11833,cg05260482,-0.0000415,0.00000728,-5.691495493,2.92E-08,loss,yes,-0.0000179,0.0000124,-1.449547241,0.148195696,neg,ns,0.015339107,0.00362544,4.230964056,0.0000307,pos,ns,4.513177445,-0.00060065,0.000124679,-4.817585381,0.00000228,neg,ns,0.490322519,Kcnj12,Kcnj12_Intron,11,61028306,61028355,61028354,61028355,50,+,GCAATTCTCCAGCACTTAAAGCAAAAATAAATCGCTGCCAGCAGCTGGCG,"Intron (Kcnj12-202/Kcnj12, intron 1 of 1)",11,61022564,61071131,48568,1,Kcnj12-202,5742,Kcnj12-202,Kcnj12,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,16515,ENSMUSG00000042529,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26101,cg25016190,-0.0000281,0.00000816,-3.44713854,0.000644811,loss,ns,0.0000201,0.0000139,1.449385911,0.148240691,pos,ns,-0.003706126,0.004062884,-0.912190903,0.362377054,neg,ns,0.44083931,-0.000339846,0.000139722,-2.432295223,0.015569199,neg,ns,0.819926428,Gm2505,Gm2505_Intron,3,143914522,143914571,143914522,143914523,50,-,CGGCTGGCACCAGTTAACTTAGGATATTGGAGTGAAAAGGCCCGTAATCA,"Intron (Gm42707-202/Gm42707-202, intron 1 of 1)",3,143872995,143873819,825,1,Gm2505-201,41576,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,37,100039938,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23840,cg08946665,0.0000313,0.00000363,8.616678672,3.58E-16,gain,yes,-0.00000895,0.00000617,-1.449224351,0.14828576,neg,ns,0.004430051,0.001808647,2.449373095,0.014863698,pos,ns,1.827873129,-0.0000485,0.0000622,-0.780167317,0.435887665,neg,ns,0.053316445,En1,En1_Promoter,1,120600098,120600147,120600146,120600147,50,-,AAGCCGTCAATAAAGTCATTTCTGTAAATGGTGTCTCCAAAGGGCCGCCG,Promoter (2-3kb),1,120602418,120607992,5575,1,En1-201,-2320,En1-201,En1,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,23,36,13798,ENSMUSG00000058665,conserved gene and region,1,120600143,120600235,93,*,93,12,0.602150538,1.425287356,0.129032258,7.57E-11,CpGisland,TRUE,U13,Hc-P
16948,cg11464227,-0.00000912,0.0000145,-0.627369275,0.530879013,loss,ns,0.0000358,0.0000247,1.44920648,0.148290746,pos,ns,0.015086101,0.007234926,2.085176844,0.03787109,pos,ns,1.4216922,-0.000538185,0.000248809,-2.163049925,0.031301445,neg,ns,0.732465602,Septin4,Septin4_Exon,11,87589675,87589724,87589675,87589676,50,-,CGACTTTGTGAAGCTGAGGACAATGCTGGTACGTACCCACATGCAGGACC,"Exon (Septin4-220/Septin4, exon 12 of 14)",11,87566653,87590539,23887,1,Septin4-220,23022,Mtmr4-202;Mtmr4-201;Mtmr4-206;Mtmr4-204;Mtmr4-203;Septin4-220;Septin4-206;Septin4-217;Septin4-207;Septin4-211;Septin4-209;Septin4-213;Septin4-215;Septin4-205;Septin4-201;Septin4-203;Septin4-204;Septin4-216;Septin4-214;Septin4-212;Septin4-219;Septin4-210;Septin4-218,Mtmr4;Mtmr4;Mtmr4;Mtmr4;Mtmr4;Septin4;Septin4;Septin4;Septin4;Septin4;Septin4;Septin4;Septin4;Septin4;Septin4;Septin4;Septin4;Septin4;Septin4;Septin4;Septin4;Septin4;Septin4,0;0;-2502;-2740;0;0;0;0;0;0;11219;0;11191;0;0;0;0;8606;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25631,cg09818486,0.000225587,0.000018,12.53638518,1.92E-29,gain,yes,-0.0000443,0.0000306,-1.449184887,0.14829677,neg,ns,0.005896442,0.008956103,0.658371383,0.510788166,pos,ns,0.291759173,-0.00054875,0.000308,-1.781656882,0.075784069,neg,ns,0.157997284,Epo,Epo_fiveUTR,5,137530745,137530794,137530793,137530794,50,-,CACTCATGGCGCCGGGCCCGTGGGGCAGGGTTGGGGGCGGCTGGGGGCCG,5' UTR,5,137483020,137533242,50223,2,Epo-202,2448,Epo-202;Gigyf1-201;Gnb2-201;Gnb2-213;Gnb2-209;Gnb2-203;Gnb2-204;Gnb2-202;Gnb2-212;Gnb2-214;Gnb2-215;Gnb2-208;Gnb2-205;Gnb2-210;Gnb2-211;Gnb2-206;Gnb2-207,Epo;Gigyf1;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,9,13856,ENSMUSG00000029711,mapped to different genes,5,137530649,137531066,418,*,418,30,0.693779904,0.609211038,0.071770335,9.46E-19,CpGisland,TRUE,NA,NRS
26574,cg06675048,-0.0000431,0.0000156,-2.761303089,0.006100347,loss,ns,-0.0000384,0.0000265,-1.448899104,0.148376524,neg,ns,-0.02425842,0.007773238,-3.120761159,0.001973651,neg,ns,2.704729603,0.000793795,0.000267321,2.969445924,0.003216231,pos,ns,0.818002862,Casz1,Casz1_Intron,4,148923416,148923465,148923464,148923465,50,-,TTCCCCTGATTTATAGAGTTACTTACGCTAAGTGAGGCCACTTAGACGCG,"Intron (Casz1-201/Casz1, intron 4 of 15)",4,148804429,148945129,140701,1,Casz1-201,118987,Casz1-201;Casz1-202;Casz1-206,Casz1;Casz1;Casz1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,94,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24900,cg04196919,-0.00000178,0.00000153,-1.164672752,0.24504696,loss,ns,0.00000376,0.0000026,1.448810651,0.148401215,pos,ns,0.002127722,0.000760946,2.79615539,0.005494316,pos,ns,2.260086337,-0.0000498,0.0000262,-1.90222625,0.058068208,neg,ns,0.966909385,Plpp4,Plpp4_Exon,7,129323337,129323386,129323385,129323386,50,+,GAAAATGTCCATGGTGTCTTTTGTAGACCTCGCCCCGATTTCTTTTACCG,"Exon (Plpp4-201/Plpp4, exon 5 of 7)",7,129257031,129391412,134382,1,Plpp4-201,66306,Plpp4-201;Plpp4-204;Plpp4-202;Plpp4-203,Plpp4;Plpp4;Plpp4;Plpp4,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,6,381925,ENSMUSG00000070366,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7847,cg01423660,0.00000215,0.00000387,0.554584572,0.579578727,gain,ns,-0.00000952,0.00000657,-1.448808354,0.148401856,neg,ns,-0.000445546,0.00192554,-0.231387311,0.817166573,neg,ns,0.087689407,-0.0000252,0.0000662,-0.380743422,0.703654421,neg,ns,0.941800674,Gtdc1,Gtdc1_Intergenic_downstream,2,44518185,44518234,44518185,44518186,50,-,CGTTCTCCACATGCATCCAGCCCAGAGGGATTGTTAAGCAGATCATTGTT,Distal Intergenic,2,44565133,44571347,6215,2,Gtdc1-207,53162,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,43,227835,ENSMUSG00000036890,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9042,cg10570975,0.000000154,0.0000129,0.011923282,0.990494492,gain,ns,0.0000317,0.0000219,1.44878151,0.14840935,pos,ns,0.009829598,0.006407552,1.534064459,0.126033713,pos,ns,0.899513271,-0.000410135,0.000220355,-1.861246115,0.063655844,neg,ns,0.868229307,Nova1,Nova1_threeUTR,12,46697976,46698025,46697976,46697977,50,+,CGAGATACACTATTTGTCAAAACTTACACAGCTACAGAGTATCGACGATA,3' UTR,12,46694517,46818929,124413,2,Nova1-201,120904,Nova1-201;Nova1-204,Nova1;Nova1,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,10,24,664883,ENSMUSG00000021047,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9900,cg19545700,-0.00000184,0.00000167,-1.097360688,0.273335401,loss,ns,0.00000412,0.00000284,1.448669978,0.14844049,pos,ns,-0.000390664,0.000832547,-0.469240063,0.639227901,neg,ns,0.194344277,0.0000232,0.0000286,0.810293568,0.418393056,pos,ns,0.962556904,Ppargc1a,Ppargc1a_threeUTR,5,51463212,51463261,51463260,51463261,50,+,TCCCGCAGATTTACTGTGCACTCCTCAATTTCACCAAAAACTTCAAAACG,3' UTR,5,51454250,51553922,99673,2,Ppargc1a-203,90661,Ppargc1a-203;Ppargc1a-201;Ppargc1a-205;Ppargc1a-204,Ppargc1a;Ppargc1a;Ppargc1a;Ppargc1a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,5,13,19017,ENSMUSG00000029167,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11857,cg01373206,0.0000544,0.0000111,4.904585184,0.00000151,gain,yes,0.0000273,0.0000188,1.448577182,0.148466402,pos,ns,-0.001364409,0.005519943,-0.247178044,0.804934055,neg,ns,0.094239698,0.000425453,0.00018983,2.241225284,0.025719033,pos,ns,0.743718206,Tle3,Tle3_Intergenic_upstream,9,61227916,61227965,61227916,61227917,50,-,CGATTCCAAACAGCATGGGGGCAATCATGCATCAATCGAAGAAAAACATT,Distal Intergenic,9,61372366,61418497,46132,1,Tle3-218,-144450,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,30,21887,ENSMUSG00000032280,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17838,cg01046634,0.0000122,0.00000534,2.274925026,0.023593095,gain,ns,-0.0000131,0.00000907,-1.448516146,0.148483447,neg,ns,-0.000758944,0.002658247,-0.285505292,0.775447718,neg,ns,0.110447478,-0.0000937,0.0000914,-1.025207821,0.306064453,neg,ns,0.887891409,Dlg2,Dlg2_Exon,7,91997171,91997220,91997171,91997172,50,-,CGGAACCTGTTTACAGCACTGTGAACAAACTATGTGATAAGCCTGCTTCT,"Exon (Dlg2-217/Dlg2, exon 15 of 28)",7,90477231,92449247,1972017,1,Dlg2-217,1519940,Dlg2-217;Dlg2-204;Dlg2-209;Dlg2-201;Dlg2-220;Dlg2-218;Dlg2-210;Dlg2-219;Dlg2-203,Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,21,23859,ENSMUSG00000052572,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23824,cg25359553,-0.00000219,0.00000207,-1.061048121,0.289493972,loss,ns,0.00000508,0.00000351,1.448403865,0.148514808,pos,ns,0.004817383,0.001027959,4.686355909,0.00000417,pos,ns,5.379820416,-0.0000752,0.0000354,-2.126237017,0.034273436,neg,ns,0.071236039,Galnt2l,Galnt2l_Intron,8,120487965,120488014,120488013,120488014,50,+,ACCGATAATGATTCTTGCATGAAAATTGATCGAGGGGCTCTCCACCGCCG,"Intron (Galnt2l-201/Galnt2l, intron 1 of 15)",8,119910841,124345722,4434882,1,Galnt2l-201,577124,Galnt2l-201;Gse1-206;Gse1-201,Galnt2l;Gse1;Gse1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,28,,NA,mapped to different genes,8,120487967,120488062,96,*,96,12,0.65625,1.230769231,0.125,1.14E-10,CpGisland,TRUE,U1,Pr-A
774,cg20813565,-0.0000205,0.0000027,-7.60374986,3.46E-13,loss,yes,-0.00000664,0.00000458,-1.448357988,0.148527623,neg,ns,-0.002670697,0.00134219,-1.989805504,0.047490616,neg,ns,1.323392196,-0.0000183,0.0000462,-0.395605567,0.692668139,neg,ns,0.927959229,Usp7,Usp7_Exon,16,8712034,8712083,8712034,8712035,50,-,CGCTTTTTTGGTGTGGTCTGTCTGGATAAAAGCGTGGCATCACCATAATC,"Exon (Usp7-207/Usp7, exon 4 of 32)",16,8689595,8792308,102714,2,Usp7-207,80225,Usp7-207;Usp7-206;Usp7-208;Usp7-210,Usp7;Usp7;Usp7;Usp7,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,10,252870,ENSMUSG00000022710,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15480,cg27099350,-0.0000274,0.00000781,-3.513481052,0.000508113,loss,ns,0.0000192,0.0000133,1.448216475,0.148567158,pos,ns,-0.005745603,0.003886543,-1.47833248,0.140334123,neg,ns,0.852836716,0.000049,0.000133658,0.366587645,0.714176706,pos,ns,0.862268427,Asic2,Asic2_Intron,11,81035696,81035745,81035696,81035697,50,+,CGAGATGGCTTACATGAAGCTAAGCACTCTGGTGATTATAAAATAGCTGA,"Intron (Asic2-201/Asic2, intron 1 of 9)",11,80880169,81153321,273153,2,Asic2-201,117576,Asic2-201;Asic2-202,Asic2;Asic2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,10,11418,ENSMUSG00000020704,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25797,cg23977950,0.00003,0.00000509,5.895893828,9.73E-09,gain,yes,-0.0000125,0.00000865,-1.448063958,0.148609776,neg,ns,0.001256085,0.002534556,0.495583805,0.62053921,pos,ns,0.207230772,0.000019,0.0000872,0.217846077,0.827692365,pos,ns,0.093205942,Uncx,Uncx_Intergenic_downstream,5,139549016,139549065,139549064,139549065,50,+,TGCTGCGTTATCAGCCTATTGATCATGTGTCGCCTGTAATAGGACAGGCG,Distal Intergenic,5,139543898,139545268,1371,1,Uncx-202,5118,Uncx-201;Uncx-202,Uncx;Uncx,0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,59,88,22255,ENSMUSG00000029546,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
19394,cg06442475,-0.00000415,0.00000254,-1.632210608,0.103650462,loss,ns,-0.00000625,0.00000431,-1.447949217,0.148641845,neg,ns,0.000976252,0.001263961,0.772374847,0.440480889,pos,ns,0.35607293,-0.0000205,0.0000435,-0.472118925,0.637174064,neg,ns,0.94595674,Foxn3,Foxn3_Exon,12,99219652,99219701,99219700,99219701,50,-,CAATGTCAGGATCTGGAAAAATCAACCAATAAATAACATTATTTACAACG,"Exon (Foxn3-212/Foxn3, exon 2 of 4)",12,99190078,99393797,203720,2,Foxn3-201,174096,Foxn3-201;Foxn3-209;Foxn3-202;Foxn3-212;Foxn3-211;Foxn3-206;Foxn3-204,Foxn3;Foxn3;Foxn3;Foxn3;Foxn3;Foxn3;Foxn3,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,17,71375,ENSMUSG00000033713,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24725,cg21929632,-0.00000994,0.00000342,-2.906198644,0.003921992,loss,ns,-0.00000842,0.00000581,-1.44790518,0.148654154,neg,ns,0.000188425,0.001703159,0.110632437,0.911979414,pos,ns,0.040014965,-0.000143513,0.0000586,-2.45021865,0.014829515,neg,ns,0.936257632,Fus,Fus_Exon,7,127974362,127974411,127974410,127974411,50,+,GAAGCTTCATGTCCTTTCTTCTAACTTGTCTTCTCCAGCGGAAGTGACCG,"Exon (Fus-203/Fus, exon 7 of 15)",7,127967457,127985701,18245,1,Fus-203,6905,Fus-203;Fus-201;Fus-208;Fus-213;Fus-206;Fus-204;Fus-205;Fus-210;Fus-211;Fus-215;Fus-207;Fus-214;Fus-216,Fus;Fus;Fus;Fus;Fus;Fus;Fus;Fus;Fus;Fus;Fus;Fus;Fus,0;0;6871;0;0;0;0;0;0;-564;-1273;-2903;-3721,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,233908,ENSMUSG00000030795,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14912,cg00489428,-0.00000943,0.00000192,-4.899304332,0.00000155,loss,yes,-0.00000473,0.00000327,-1.447868696,0.148664353,neg,ns,0.001119178,0.000957547,1.168797936,0.243383039,pos,ns,0.61370969,-0.0000761,0.0000329,-2.31130439,0.021471676,neg,ns,0.951095344,Fam222b,Fam222b_Exon,11,78154305,78154354,78154305,78154306,50,-,CGGAAGATGCCAGACTCAGATGCCCCCCCGAATGTGACCGTGTCTACCTC,"Exon (Fam222b-201/Fam222b, exon 3 of 3)",11,78094660,78156700,62041,1,Fam222b-201,59645,Fam222b-201;Fam222b-202;Fam222b-203;Gm12571-201;Traf4-203,Fam222b;Fam222b;Fam222b;Gm12571;Traf4,0;0;0;-4867;11235,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,21,216971,ENSMUSG00000037750,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18139,cg01429989.2,0.000198047,0.0000165,12.02005424,1.41E-27,gain,yes,-0.0000405,0.000028,-1.447790602,0.148686184,neg,ns,-0.02901405,0.00820048,-3.538091737,0.0004647,neg,ns,3.332827159,0.001188988,0.000282014,4.216064379,0.0000327,pos,ns,0.572349843,Nup93,Nup93_Exon,8,94227719,94227768,94227767,94227768,50,-,CAGCTTGCTGCTGAGACTGAGGGCATCTCAGAGCTTCCCCATGTGGAACG,"Exon (Nup93-201/Nup93, exon 2 of 22)",8,94214564,94314860,100297,1,Nup93-201,13155,Nup93-201;Nup93-204;Nup93-207;Nup93-205;Nup93-202;Rpl10-ps5-201,Nup93;Nup93;Nup93;Nup93;Nup93;Rpl10-ps5,0;0;0;0;0;4726,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,71805,ENSMUSG00000032939,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14249,cg02152513,-0.00000504,0.00000289,-1.741472406,0.082592777,loss,ns,-0.00000711,0.00000491,-1.447759515,0.148694876,neg,ns,0.000101757,0.001439453,0.070691297,0.943689029,pos,ns,0.025171094,-0.0000398,0.0000495,-0.804974381,0.421451412,neg,ns,0.934497526,Onecut1,Onecut1_Intergenic_downstream,9,74896388,74896437,74896388,74896389,50,+,CGCTACTGTTCTCACTTTATGCCGTGCAATATCATCTGCTGTGTTTGCTA,Distal Intergenic,9,74866484,74890360,23877,1,Onecut1-202,29904,Onecut1-201,Onecut1,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,28,15379,ENSMUSG00000043013,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5670,cg21799207,0.000000627,0.00000123,0.509874355,0.610502292,gain,ns,0.00000302,0.00000209,1.44731906,0.14881806,pos,ns,0.001339868,0.000612242,2.188460465,0.029382026,pos,ns,1.531918265,-0.0000319,0.0000211,-1.513446771,0.131185039,neg,ns,0.969554521,Mapkap1,Mapkap1_Intron,2,34531332,34531381,34531332,34531333,50,+,CGCAGGTGTAGCATGGTGATACATATTACATTGTGCCACAATGGATTTAT,"Intron (Mapkap1-204/Mapkap1, intron 5 of 10)",2,34406862,34623475,216614,1,Mapkap1-204,124470,Mapkap1-204;Mapkap1-202;Mapkap1-201;Mapkap1-209;Mapkap1-203;Mapkap1-207,Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,59,227743,ENSMUSG00000038696,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16585,cg16454353,0.00000897,0.00000292,3.068570289,0.002340803,gain,ns,-0.00000719,0.00000497,-1.447289177,0.14882642,neg,ns,0.000900252,0.001454982,0.618737378,0.536543762,pos,ns,0.27039485,-0.00000449,0.00005,-0.089645948,0.92862646,neg,ns,0.947907967,Gm5231,Gm5231_Intergenic_upstream,17,85570196,85570245,85570196,85570197,50,-,CGCATGTAAAATATTCTGTTAATGTTATATAATTTGGCTGTGGAGTATCA,Distal Intergenic,17,85541625,85542703,1079,2,Gm5231-201,-27542,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,11,383282,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19991,cg18814418,-0.00000481,0.00000286,-1.682595775,0.093460237,loss,ns,-0.00000704,0.00000486,-1.447266537,0.148832755,neg,ns,-0.003389324,0.001424085,-2.380000787,0.017917043,neg,ns,1.746733671,0.000125514,0.000049,2.562852414,0.010853543,pos,ns,0.929589311,Cpsf2,Cpsf2_Exon,12,102003141,102003190,102003141,102003142,50,+,CGCATTGGATTAGAAGGCTGCCTTTGTCAAGATTTTTATAGGATAAGAGA,"Exon (Cpsf2-201/Cpsf2, exon 15 of 15)",12,101975988,102006424,30437,1,Cpsf2-201,27153,Cpsf2-201,Cpsf2,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,51786,ENSMUSG00000041781,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8414,cg04709860,0.0000744,0.0000109,6.827326387,4.57E-11,gain,yes,-0.0000268,0.0000185,-1.44720238,0.148850706,neg,ns,0.012531701,0.005424645,2.310141935,0.021536791,pos,ns,1.666819003,-0.000174919,0.000186553,-0.93763646,0.349161186,neg,ns,0.296057092,Zeb2,Zeb2_Intron,2,45103460,45103509,45103460,45103461,50,-,CGAAAGTGAAATCATACCTAAGGCATTCAAAAGACCGCCGTGTCAGGGGT,"Intron (Zeb2-212/Zeb2, intron 3 of 10)",2,44983632,45117395,133764,2,Zeb2-212,13886,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219;Zeb2-211;Zeb2-210;Zeb2-205;Zeb2-223;Zeb2-217;Zeb2-225;Zeb2-204,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;6567;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4488,cg07104049,-0.0000358,0.00000859,-4.164199731,0.0000405,loss,ns,0.0000211,0.0000146,1.447115794,0.148874935,pos,ns,-0.000337644,0.004274085,-0.078997858,0.937085296,neg,ns,0.028220877,-0.000283643,0.000146985,-1.929737835,0.054551604,neg,ns,0.686001001,Ntm,Ntm_Intron,9,29082526,29082575,29082526,29082527,50,-,CGGCTCAGAGCTAATATTATGGCAAAGTAGTAATTATTTCAACAGTAAAC,"Intron (Ntm-201/Ntm, intron 4 of 7)",9,28994750,29963129,968380,2,Ntm-201,880554,Ntm-201;Ntm-203;Ntm-202;Ntm-205;Ntm-208;Ntm-204,Ntm;Ntm;Ntm;Ntm;Ntm;Ntm,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,27,32,235106,ENSMUSG00000059974,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26687,cg23393655,-0.0000104,0.00000762,-1.362179856,0.174130057,loss,ns,0.0000187,0.0000129,1.446652563,0.149004612,pos,ns,-0.000187756,0.003793514,-0.04949386,0.960557603,neg,ns,0.017476586,-0.000027,0.000130459,-0.206940223,0.836192404,neg,ns,0.621696381,Fgd1,Fgd1_fiveUTR,X,151066198,151066247,151066198,151066199,50,-,CGGATCCTGGTTAAAAGTTTGTCCCTTGACCCTGGCCAAAGCCTAGAGCC,5' UTR,20,151046150,151089521,43372,1,Fgd1-202,20048,Fgd1-202;Fgd1-201;Fgd1-203,Fgd1;Fgd1;Fgd1,0;0;-1136,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,2,14163,ENSMUSG00000025265,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15921,cg23055110,-0.00000351,0.00000499,-0.703208084,0.482453861,loss,ns,0.0000123,0.00000848,1.446452768,0.149060569,pos,ns,0.003223048,0.00248383,1.297611795,0.195385511,pos,ns,0.709107645,-0.0000948,0.0000854,-1.109427289,0.268105783,neg,ns,0.547452073,Gm5452,Gm5452_Intron,13,83880301,83880350,83880301,83880302,50,+,CGTTCACTGATGCATATTAGCAGGGTCTAGCAATGTGGTGAAATTGTCAC,"Intron (C130071C03Rik-205/C130071C03Rik-205, intron 2 of 2)",13,83832340,83833336,997,1,Gm5452-201,47961,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,16,432789,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4196,cg17410614,0.0000354,0.00000542,6.52664758,2.74E-10,gain,yes,-0.0000133,0.0000092,-1.446253578,0.149116373,neg,ns,0.001831994,0.002696625,0.679365386,0.497413308,pos,ns,0.303282599,-0.000109278,0.0000927,-1.178373213,0.239551581,neg,ns,0.809015771,Brd3,Brd3_Exon,2,27450265,27450314,27450313,27450314,50,+,TTCCTTTGCTTTTTCTGTAAACAAGACTTGACATATCTCTCCAGTTCCCG,"Exon (Brd3-201/Brd3, exon 10 of 12)",2,27445579,27475398,29820,2,Brd3-201,25084,Brd3-201;Brd3-202;Brd3-203;Brd3-210;Brd3-206;Brd3-209;Brd3-205,Brd3;Brd3;Brd3;Brd3;Brd3;Brd3;Brd3,0;0;0;0;0;0;25339,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,67382,ENSMUSG00000026918,conserved gene but different region,2,27450313,27450461,149,*,149,11,0.577181208,0.888346884,0.073825503,0.000000261,CpGisland,TRUE,U10,Tr-S
18492,cg01251574,-0.00000367,0.00000195,-1.886814895,0.060119525,loss,ns,0.00000478,0.00000331,1.446232684,0.149122227,pos,ns,0.002063036,0.000968576,2.129968213,0.03396156,pos,ns,1.46901237,-0.0000839,0.0000333,-2.517417118,0.012325834,neg,ns,0.954934042,1700019M22Rik,1700019M22Rik_Intergenic_upstream,12,96075696,96075745,96075744,96075745,50,+,AAGGTTAATCTGCCTACATGTTTATGAAACATTATGCAAATCATTCTCCG,Distal Intergenic,12,96046767,96047120,354,2,1700019M22Rik-201,-28576,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,69423,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
385,cg13465131,-0.00000564,0.00000295,-1.912160848,0.056777105,loss,ns,0.00000725,0.00000501,1.446154644,0.149144095,pos,ns,0.001542673,0.001468864,1.050249655,0.294421386,pos,ns,0.531030646,-0.0000824,0.0000505,-1.630717325,0.103965503,neg,ns,0.943955547,Zfhx4,Zfhx4_Exon,3,5330314,5330363,5330314,5330315,50,+,CGAAACTTTATGCATTAAAACTACCCATATTGGAATTAAATGAGACGGCT,"Exon (Zfhx4-202/Zfhx4, exon 2 of 2)",3,5218526,5413165,194640,1,Zfhx4-203,111788,Zfhx4-203;Zfhx4-202;Zfhx4-201;Zfhx4-205,Zfhx4;Zfhx4;Zfhx4;Zfhx4,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,23,77,80892,ENSMUSG00000025255,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2195,cg08521601,0.0000171,0.00000608,2.817083909,0.005157177,gain,ns,-0.0000149,0.0000103,-1.446111726,0.149156123,neg,ns,-0.000979236,0.003026994,-0.323501218,0.746533809,neg,ns,0.126950519,0.0000578,0.000104098,0.555705633,0.578812929,pos,ns,0.696066198,Cyp7b1,Cyp7b1_Intron,3,18378822,18378871,18378822,18378823,50,+,CGTTTAGAGTGATTGAGAGCAGTGATTGGGACAATAGGCTGCTGAATTTC,"Intron (Gm30667-201/Gm30667-201, intron 4 of 5)",3,18071950,18243338,171389,2,Cyp7b1-201,-135484,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,17,13123,ENSMUSG00000039519,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24569,cg16305769,-0.000201207,0.0000192,-10.46815869,3.70E-22,loss,yes,0.0000472,0.0000327,1.446047706,0.149174066,pos,ns,-0.028470546,0.009566419,-2.976092418,0.003149255,neg,ns,2.501792201,0.001012332,0.000328988,3.077105748,0.00227675,pos,ns,0.710863185,Maz,Maz_Exon,7,127024466,127024515,127024514,127024515,50,-,ATGGTGAGGACCCTGGCTGTGCACCTTCATGTGGTCCGAAATATAAGCCG,"Exon (Maz-203/Maz, exon 4 of 6)",7,127022130,127026526,4397,2,Maz-203,2011,Gm42742-201;Gm42742-203;Gm42742-204;Gm42742-202;Kif22-202;Kif22-201;Kif22-205;Kif22-206;Maz-203;Maz-201;Maz-204;Maz-202;Maz-206;Maz-205;Prrt2-201;Prrt2-202;Prrt2-204;Prrt2-203;Prrt2-205;Prrt2-206;Prrt2-207,Gm42742;Gm42742;Gm42742;Gm42742;Kif22;Kif22;Kif22;Kif22;Maz;Maz;Maz;Maz;Maz;Maz;Prrt2;Prrt2;Prrt2;Prrt2;Prrt2;Prrt2;Prrt2,0;0;0;0;4442;17956;3601;8189;0;0;0;0;0;0;0;0;-4564;-4871;-3510;-3329;-4111,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,16,17,17188,ENSMUSG00000030678,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U4,Pr-F
14924,cg24579136,0.0000153,0.0000118,1.296696599,0.195699955,gain,ns,0.0000289,0.00002,1.445730789,0.14926291,pos,ns,0.01135492,0.005859945,1.937717755,0.053565628,pos,ns,1.271113803,0.000112093,0.000201523,0.556229943,0.578454935,pos,ns,0.273294094,Nr2f1,Nr2f1_Intron,13,78177816,78177865,78177864,78177865,50,-,AACATTGATTTATTGCTTTTAAAAGTAAATTTACACACATGCCAGCAGCG,"Intron (3110006O06Rik-201/3110006O06Rik-201, intron 1 of 1)",13,78189872,78190443,572,2,Nr2f1-204,12627,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,55,13865,ENSMUSG00000069171,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
7383,cg05659014,-0.0000145,0.00000374,-3.877964439,0.000128637,loss,ns,-0.00000918,0.00000635,-1.44567629,0.149278193,neg,ns,-0.004982258,0.001861121,-2.677019834,0.007823409,neg,ns,2.106603977,0.000133532,0.000064,2.086316765,0.037767016,pos,ns,0.927703277,R3hcc1l,R3hcc1l_Intergenic_upstream,19,42483950,42483999,42483998,42483999,50,+,GATCAGGATATGCTGCCATCGATTAACTGTGAGAGGGGCCACTTGACTCG,Distal Intergenic,19,42518759,42592343,73585,1,R3hcc1l-201,-34760,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,13,52013,ENSMUSG00000025184,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4069,cg11319388,-0.00000479,0.00000391,-1.224134715,0.221830924,loss,ns,-0.0000096,0.00000664,-1.445595557,0.149300834,neg,ns,-0.004628274,0.001946009,-2.378341276,0.017996398,neg,ns,1.74481441,-0.000120564,0.0000669,-1.801533046,0.072590451,neg,ns,0.92665796,Gm18089,Gm18089_Intergenic_upstream,18,26713822,26713871,26713870,26713871,50,+,TTTGACATCAAATTTATATACTCAATAAGAAAGCACAATTAATGGTCCCG,Distal Intergenic,18,27008674,27009328,655,1,Gm18089-201,-294803,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,5,100416384,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4795,cg18588934,0.00000402,0.00000363,1.108424281,0.268537832,gain,ns,-0.00000891,0.00000617,-1.445410942,0.149352618,neg,ns,0.001308119,0.00180657,0.724090022,0.469556553,pos,ns,0.328312094,-0.0000715,0.0000621,-1.151351149,0.25047503,neg,ns,0.048276749,Cstad,Cstad_Promoter,2,30594964,30595013,30594964,30594965,50,-,CGAAAAGATCAGTATCTGTCAGTCTGACAGCTGATTGGCTGCTCGGAGAT,Promoter (<=1kb),2,30595040,30608943,13904,1,Cstad-201,-76,Cstad-201,Cstad,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,7,78617,ENSMUSG00000047363,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14610,cg01979535,-0.0000102,0.00000526,-1.940982173,0.053166617,loss,ns,-0.0000129,0.00000894,-1.445304759,0.149382408,neg,ns,-0.003928067,0.002619436,-1.499584977,0.134739632,neg,ns,0.870504644,-0.0000485,0.0000901,-0.538473363,0.590636718,neg,ns,0.845849817,C530008M17Rik,C530008M17Rik_Exon,5,76840813,76840862,76840813,76840814,50,+,CGGGCATTTTCCCATGACAGTATTTTTATCCCTGATGGGGGAGCAGAAAG,"Exon (C530008M17Rik-207/C530008M17Rik, exon 4 of 4)",5,76657683,76840881,183199,1,C530008M17Rik-207,183130,C530008M17Rik-207;C530008M17Rik-213;C530008M17Rik-204;C530008M17Rik-203;C530008M17Rik-202;C530008M17Rik-211;C530008M17Rik-205,C530008M17Rik;C530008M17Rik;C530008M17Rik;C530008M17Rik;C530008M17Rik;C530008M17Rik;C530008M17Rik,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,320827,ENSMUSG00000036377,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3490,cg01571965,0.0000107,0.00000538,1.994808297,0.046939056,gain,ns,0.0000132,0.00000914,1.44529371,0.149385508,pos,ns,-0.00428824,0.002678584,-1.600935632,0.110409706,neg,ns,0.956992745,0.00015483,0.0000921,1.680813624,0.093806356,pos,ns,0.843300467,Bcl11a,Bcl11a_Exon,11,24164876,24164925,24164876,24164877,50,-,CGCAGCGACACTTGTGAGTACTGTGGGAAAGTCTTCAAGAACTGTAGCAA,"Exon (Bcl11a-201/Bcl11a, exon 4 of 5)",11,24078056,24173194,95139,1,Bcl11a-201,86820,Bcl11a-201;Bcl11a-203;Bcl11a-202;Bcl11a-204;Bcl11a-206,Bcl11a;Bcl11a;Bcl11a;Bcl11a;Bcl11a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,51,98,14025,ENSMUSG00000000861,conserved gene but different region,11,24164541,24164882,342,*,342,25,0.628654971,0.74025974,0.073099415,6.44E-16,CpGisland,TRUE,NA,NRS
9867,cg27036136,0.000121688,0.0000187,6.516706854,2.91E-10,gain,yes,-0.0000458,0.0000317,-1.445214906,0.149407621,neg,ns,0.022121422,0.009293829,2.380226897,0.017906254,pos,ns,1.746995251,-0.000349272,0.000319614,-1.092794064,0.275332719,neg,ns,0.484536665,Clk4,Clk4_Exon,11,51272999,51273048,51273047,51273048,50,+,AATTGCGTATTCTGCCCTGAATTCACTCTGATATATTGATTGGCTGGACG,"Exon (Clk4-213/Clk4, exon 1 of 3)",11,51261730,51273626,11897,1,Clk4-205,11269,Clk4-214;Clk4-205;Clk4-201;Clk4-204;Clk4-207;Clk4-212;Clk4-210;Clk4-203;Clk4-213;Clk4-202;Clk4-208;Clk4-211,Clk4;Clk4;Clk4;Clk4;Clk4;Clk4;Clk4;Clk4;Clk4;Clk4;Clk4;Clk4,11269;0;0;0;9835;0;9825;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,7,12750,ENSMUSG00000020385,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19981,cg06816948,-0.00000124,0.0000183,-0.067793269,0.945993906,loss,ns,-0.000045,0.0000311,-1.445183063,0.149416556,neg,ns,0.022609766,0.009121976,2.478604067,0.013721639,pos,ns,1.862593997,-0.001304142,0.000313704,-4.15723757,0.0000417,neg,ns,0.245173991,Rpl27-ps2,Rpl27-ps2_Intergenic_upstream,11,101921682,101921731,101921730,101921731,50,+,TAGACACATTCCAAACTTTTCAGCAAATTATAGTGTTTGCCAACTGGCCG,Distal Intergenic,11,101939501,101939899,399,1,Rpl27-ps2-201,-17770,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,194960,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14832,cg08690021,-0.0000013,0.00000514,-0.253743557,0.79986189,loss,ns,0.0000126,0.00000873,1.445174585,0.149418935,pos,ns,0.005607823,0.002557595,2.192615319,0.029078062,pos,ns,1.536434542,-0.000233329,0.000088,-2.652803691,0.008393719,neg,ns,0.898452655,Fam172a,Fam172a_Intron,13,77893990,77894039,77894038,77894039,50,+,GTGTAAGCTAGCATTATGTACTTAAAGTTGTGTCCTTTTGGCTAAAGACG,"Intron (Fam172a-203/Fam172a, intron 6 of 10)",13,77708690,78163655,454966,1,Fam172a-203,185300,Fam172a-203;Fam172a-201;Fam172a-202;Fam172a-209;Fam172a-205;Fam172a-207;Fam172a-208,Fam172a;Fam172a;Fam172a;Fam172a;Fam172a;Fam172a;Fam172a,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,24,68675,ENSMUSG00000064138,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21562,cg10365409,0.000000376,0.00000145,0.259045384,0.795772151,gain,ns,0.00000357,0.00000247,1.445056436,0.149452094,pos,ns,0.000359483,0.000723339,0.4969776,0.619557112,pos,ns,0.207918654,0.00000248,0.0000249,0.099558014,0.920759578,pos,ns,0.032614234,Tcta,Tcta_Exon,9,108305755,108305804,108305755,108305756,50,+,CGTAGAACCCCCACGCCAGCTGGATGCCCAGGAGACTTAACACCAACCAC,Promoter (<=1kb),9,108302958,108305990,3033,2,Tcta-201,186,Amt-202;Amt-201;Rhoa-201;Rhoa-204;Rhoa-205;Rhoa-203;Tcta-201;Tcta-202;Tcta-203,Amt;Amt;Rhoa;Rhoa;Rhoa;Rhoa;Tcta;Tcta;Tcta,8902;8885;-325;-635;-993;-1025;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,102791,ENSMUSG00000039461,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
8540,cg24472574,0.000102223,0.0000153,6.663848752,1.22E-10,gain,yes,-0.0000377,0.0000261,-1.445025002,0.149460917,neg,ns,-0.009578555,0.007634809,-1.254590015,0.210572701,neg,ns,0.676597932,0.000721289,0.00026256,2.747135956,0.00636353,pos,ns,0.658376755,Btrc,Btrc_Intron,19,45317609,45317658,45317609,45317610,50,+,CGTCTCCCTACTGAAGAATTATGTTGCATAAAGCAGCCGCCACCATCTTG,"Intron (Gm28578-208/Gm28578-208, intron 3 of 6)",19,45363734,45507736,144003,1,Btrc-204,-46076,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,63,98,12234,ENSMUSG00000025217,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1757,cg12918961,0.0000103,0.00000507,2.042209477,0.041976671,gain,ns,0.0000124,0.00000861,1.444988405,0.14947119,pos,ns,0.002906452,0.002521693,1.152579483,0.249971026,pos,ns,0.602110327,-0.000000726,0.0000867,-0.00837408,0.993323915,neg,ns,0.043830154,Kctd1,Kctd1_Intron,18,15063621,15063670,15063621,15063622,50,-,CGCTGAGAGCTTTTGTGTTTAATGACCTTCAGCTACCGGGAGGCAAAGCC,"Intron (Kctd1-201/Kctd1, intron 1 of 4)",18,14968685,15151446,182762,2,Kctd1-201,87776,Kctd1-201;Kctd1-202;Kctd1-206;Kctd1-205,Kctd1;Kctd1;Kctd1;Kctd1,0;0;0;-1732,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,24,106931,ENSMUSG00000036225,conserved gene and region,18,15063315,15063752,438,*,438,43,0.673515982,0.892352885,0.098173516,1.42E-32,CpGisland,TRUE,U3,Pr-B
16047,cg04067678,-0.00000792,0.00000405,-1.957956359,0.051131863,loss,ns,-0.00000993,0.00000687,-1.444756204,0.149536381,neg,ns,-0.004144726,0.002013844,-2.058116046,0.040414666,neg,ns,1.393461003,0.0000274,0.0000693,0.396178278,0.692246063,pos,ns,0.918596339,Bnc2,Bnc2_Intron,4,84284213,84284262,84284261,84284262,50,-,TCAGCAGCTCAAATATAATTAACCTTCCATTCTCAATGCAAACTGCCACG,"Intron (Bnc2-201/Bnc2, intron 7 of 7)",4,84275095,84675034,399940,2,Bnc2-201,390772,Bnc2-201;Bnc2-202;Bnc2-214;Bnc2-218;Bnc2-215;Bnc2-222;Bnc2-216;Bnc2-213;Bnc2-219,Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,91,242509,ENSMUSG00000028487,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26152,cg11479667,-0.0000205,0.00000891,-2.296391904,0.022320211,loss,ns,-0.0000219,0.0000151,-1.444674355,0.149559366,neg,ns,0.013211033,0.004434263,2.97930737,0.003117319,pos,ns,2.506218821,-0.000348156,0.000152494,-2.283078102,0.023102389,neg,ns,0.822049496,Lmo4,Lmo4_Exon,3,144197965,144198014,144198013,144198014,50,+,AATGCAACCCAGAAATTATGCCTGGAGCCAAGTCCATTAAAGGTACTTCG,"Exon (Gm43445-201/Gm43445-201, exon 1 of 1)",3,144188530,144202396,13867,2,Lmo4-203,4382,Lmo4-203;Lmo4-201;Lmo4-202;Lmo4-207;Lmo4-206;Lmo4-208;Lmo4-205;Lmo4-204,Lmo4;Lmo4;Lmo4;Lmo4;Lmo4;Lmo4;Lmo4;Lmo4,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,18,54,16911,ENSMUSG00000028266,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16249,cg02079505,-0.00000172,0.00000739,-0.232120508,0.816597575,loss,ns,0.0000181,0.0000126,1.444343458,0.149652314,pos,ns,0.003246169,0.003679807,0.882157494,0.37837515,pos,ns,0.422077394,0.000015,0.000126548,0.118733218,0.905563619,pos,ns,0.546658694,Bnc2,Bnc2_Intron,4,84669181,84669230,84669229,84669230,50,+,TGTCCTTGACATGCACAGAAGAGCTGCACCCCAGGACAGCAGCATGCACG,"Intron (Bnc2-201/Bnc2, intron 1 of 7)",4,84275095,84675034,399940,2,Bnc2-201,5804,Bnc2-201;Bnc2-202;Bnc2-214;Bnc2-215;Bnc2-206;Bnc2-211;Bnc2-217;Bnc2-207;Bnc2-203;Bnc2-209;Bnc2-204;Bnc2-210,Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,91,242509,ENSMUSG00000028487,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
647,cg24123856,-0.00000398,0.00000594,-0.669052451,0.50395996,loss,ns,-0.0000146,0.0000101,-1.444274282,0.149671751,neg,ns,0.00197949,0.002958194,0.669155144,0.503894546,pos,ns,0.297660342,-0.0000992,0.000101732,-0.974747092,0.330445723,neg,ns,0.908462287,Gm44908,Gm44908_Intergenic_downstream,8,7440808,7440857,7440808,7440809,50,+,CGATTATCATTCTTTTTAGTGTTTGAGGAAGTCTATATGTAAAAATGATG,Distal Intergenic,8,7231234,7231499,266,1,Gm44908-201,209574,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,3,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15979,cg19759022,0.0000938,0.0000172,5.452588532,0.000000102,gain,yes,-0.0000422,0.0000292,-1.44422425,0.149685811,neg,ns,0.038090206,0.008566271,4.446532891,0.0000122,pos,ns,4.914612887,-0.001478978,0.000294593,-5.02040579,0.000000871,neg,yes,0.549264336,Tshz1,Tshz1_Intron,18,84082571,84082620,84082571,84082572,50,+,CGCCTGTCACAAATCCATCAGGTTTACAGATAATTAGGGGCCTGTTAATG,"Intron (Tshz1-201/Tshz1, intron 1 of 1)",18,84011627,84086404,74778,2,Tshz1-201,3784,Tshz1-201;Tshz1-202;Tshz1-203;Tshz1-204,Tshz1;Tshz1;Tshz1;Tshz1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,18,110796,ENSMUSG00000046982,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19989,cg10537936,-0.00000827,0.00000218,-3.784269993,0.000185032,loss,ns,0.00000536,0.00000371,1.444204831,0.149691268,pos,ns,0.000182182,0.001087302,0.167554465,0.867043047,pos,ns,0.06195934,0.00000419,0.0000374,0.111949479,0.910935916,pos,ns,0.961003937,Dusp3,Dusp3_Exon,11,101974855,101974904,101974903,101974904,50,+,TCCATCTTCTGCCGCATCATGAGGTAGGCGATAACTAGCGTTGGGGAGCG,"Exon (Dusp3-206/Dusp3, exon 3 of 3)",11,101971143,101983503,12361,2,Dusp3-206,8599,Dusp3-206;Dusp3-201;Dusp3-202;Dusp3-203;Dusp3-204;Dusp3-205,Dusp3;Dusp3;Dusp3;Dusp3;Dusp3;Dusp3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,72349,ENSMUSG00000003518,mapped to different genes,11,101974802,101974960,159,*,159,12,0.591194969,0.865306122,0.075471698,0.000000048,CpGisland,TRUE,U10,Tr-S
9538,cg15693666,0.00000359,0.00000606,0.592029714,0.554262219,gain,ns,0.0000149,0.0000103,1.444185965,0.149696569,pos,ns,0.001860071,0.003014527,0.617035664,0.53766412,pos,ns,0.269488944,0.0000147,0.000103669,0.141890926,0.88725833,pos,ns,0.887313746,Grik2,Grik2_Exon,10,49240714,49240763,49240714,49240715,50,-,CGAAGAAATGATGATAAGTGTGAAAAACCACCAAATGCCTCCCACTATCC,"Exon (Grik2-207/Grik2, exon 14 of 17)",10,49094833,49788766,693934,2,Grik2-207,548003,Grik2-207;Grik2-203;Grik2-202;Grik2-205;Grik2-209;Grik2-204;Grik2-201;Grik2-208,Grik2;Grik2;Grik2;Grik2;Grik2;Grik2;Grik2;Grik2,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,12,14806,ENSMUSG00000056073,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2648,cg01631295,0.000023,0.00000778,2.961985074,0.003292966,gain,ns,0.0000191,0.0000132,1.444142704,0.149708728,pos,ns,0.010876889,0.003871926,2.809167792,0.005282425,pos,ns,2.277166638,-0.000223715,0.000133155,-1.680104207,0.093944422,neg,ns,0.762854,Syn1,Syn1_threeUTR,X,20861494,20861543,20861494,20861495,50,+,CGAAAGACTTCCTCAGGCTGCGGATGGTCTCAGCTTTCACCTCGTCCTGG,3' UTR,20,20860511,20921004,60494,2,Syn1-202,59461,Araf-207;Araf-201;Araf-206;Syn1-202;Syn1-201,Araf;Araf;Araf;Syn1;Syn1,0;0;3771;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,4,20964,ENSMUSG00000037217,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12586,cg11119380,-0.00000292,0.0000053,-0.551632616,0.581597496,loss,ns,0.000013,0.000009,1.443844011,0.149792692,pos,ns,0.008389337,0.002636396,3.182123732,0.001610213,pos,ns,2.7931168,-0.000251003,0.0000907,-2.768456864,0.00597123,neg,ns,0.91084951,Ube2k,Ube2k_fiveUTR,5,65565990,65566039,65565990,65565991,50,+,CGAGCAAAAATCAAATTAAAGTAGATCTTGTAGATGAGAATTTTACAGAA,5' UTR,5,65537233,65598988,61756,1,Ube2k-201,28757,Ube2k-201;Ube2k-203;Ube2k-204;Ube2k-206;Ube2k-210;Ube2k-207;Ube2k-209;Ube2k-202;Ube2k-205;Ube2k-211,Ube2k;Ube2k;Ube2k;Ube2k;Ube2k;Ube2k;Ube2k;Ube2k;Ube2k;Ube2k,0;0;0;0;0;0;0;0;0;-3344,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,6,7,53323,ENSMUSG00000029203,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23524,cg07951445,-0.000016,0.00000525,-3.045500088,0.002522319,loss,ns,0.0000129,0.00000891,1.443708347,0.14983084,pos,ns,0.000539027,0.002611488,0.206406218,0.83660911,pos,ns,0.077477411,-0.0000876,0.0000898,-0.975343065,0.330150587,neg,ns,0.891283933,Dpyd,Dpyd_Intron,3,118756329,118756378,118756377,118756378,50,-,AGTGATAAGTGGGATTAATGGCAGCCTGATGCACTTTAGTCTGCAGAGCG,"Intron (Dpyd-201/Dpyd, intron 3 of 22)",3,118562129,119432924,870796,1,Dpyd-201,194200,Dpyd-201;Dpyd-202;Dpyd-205,Dpyd;Dpyd;Dpyd,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,14,29,99586,ENSMUSG00000033308,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7511,cg00594698,-0.0000021,0.00000115,-1.826314146,0.068764631,loss,ns,0.00000282,0.00000196,1.443623515,0.149854699,pos,ns,-0.000247449,0.000573178,-0.431714795,0.66624881,neg,ns,0.176363553,0.00000526,0.0000197,0.266972127,0.789668132,pos,ns,0.968290031,Zbtb20,Zbtb20_Intron,16,42924692,42924741,42924692,42924693,50,-,CGCTCAGAAGTAATTAATGTTAATAAGATTTTAATGTGCTTGTGAGATCA,"Intron (Zbtb20-209/Zbtb20, intron 2 of 7)",16,42875881,43463175,587295,1,Zbtb20-209,48811,Zbtb20-209;Zbtb20-210;Zbtb20-211;Zbtb20-217;Zbtb20-218;Zbtb20-204,Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,98,56490,ENSMUSG00000022708,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4267,cg14713702,-0.00000794,0.00000272,-2.922760757,0.003724659,loss,ns,-0.00000666,0.00000462,-1.443593906,0.149863027,neg,ns,0.00141089,0.001352287,1.043336127,0.297605572,pos,ns,0.526358942,-0.0000291,0.0000465,-0.626179689,0.531657873,neg,ns,0.924224509,Psmc4,Psmc4_Exon,7,28041853,28041902,28041901,28041902,50,+,TTGTATGCTTTCTCGAAGTCCTTGGCCAGGACAATGTAGCGGTTTTCACG,"Exon (Psmc4-201/Psmc4, exon 11 of 11)",7,28041707,28050101,8395,2,Psmc4-201,8199,Psmc4-201;Psmc4-205;Psmc4-204;Psmc4-206;Psmc4-203,Psmc4;Psmc4;Psmc4;Psmc4;Psmc4,0;0;0;0;5447,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,23996,ENSMUSG00000030603,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8587,cg07514221,0.0000235,0.00000991,2.36767524,0.018513854,gain,ns,0.0000243,0.0000168,1.443561195,0.149872227,pos,ns,0.000260185,0.004932123,0.052753204,0.957962525,pos,ns,0.01865148,-0.0000747,0.000169615,-0.440571051,0.659830622,neg,ns,0.670597896,Pcdh10,Pcdh10_Exon,3,45383528,45383577,45383576,45383577,50,+,TAGACTAAACACCAGCGAGCAGAGCTCAGCTATCTAGTTGACAGACCTCG,"Exon (Pcdh10-203/Pcdh10, exon 2 of 5)",3,45378406,45402645,24240,1,Pcdh10-203,5122,Pcdh10-204;Pcdh10-203;Pcdh10-201;Pcdh10-202;Pcdh10-205,Pcdh10;Pcdh10;Pcdh10;Pcdh10;Pcdh10,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,5,18526,ENSMUSG00000049100,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
205,cg22174870,-0.00000282,0.00000174,-1.61975206,0.106302348,loss,ns,-0.00000427,0.00000296,-1.443509049,0.149886896,neg,ns,-0.001696235,0.000867009,-1.956421836,0.051313077,neg,ns,1.289771941,0.0000408,0.0000298,1.369250823,0.171912055,pos,ns,0.968874873,Bend7,Bend7_Exon,2,4763264,4763313,4763264,4763265,50,+,CGGAAAGGACTAGACCAAAATATTGTGGGTGCAATAAAAGGTTGGTCTGC,"Exon (Bend7-204/Bend7, exon 6 of 9)",2,4717831,4800563,82733,1,Bend7-204,45433,Bend7-204;Bend7-202;Bend7-201;Bend7-203,Bend7;Bend7;Bend7;Bend7,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,209645,ENSMUSG00000048186,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8829,cg27264116,-0.00000196,0.00000153,-1.280208666,0.201428878,loss,ns,0.00000375,0.0000026,1.443489994,0.149892256,pos,ns,0.00116939,0.000761463,1.535714922,0.125628287,pos,ns,0.900912563,-0.0000413,0.0000262,-1.577491093,0.115702437,neg,ns,0.042789043,Atxn1,Atxn1_fiveUTR,13,45964938,45964987,45964986,45964987,50,+,TGAAACAGGTCCTGTACGGCTCCGCCACTGTAGTAGAAATGATGTCTGCG,Promoter (<=1kb),13,45549755,45964976,415222,2,Atxn1-201,0,Atxn1-201;Atxn1-202;Atxn1-203;Atxn1-204;Atxn1-206,Atxn1;Atxn1;Atxn1;Atxn1;Atxn1,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,10,20238,ENSMUSG00000046876,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
16355,cg09532103,0.0000336,0.0000172,1.946760562,0.05246644,gain,ns,-0.0000423,0.0000293,-1.443438409,0.149906768,neg,ns,0.023073736,0.008581745,2.688699849,0.007561009,pos,ns,2.121420261,-0.000829744,0.000295125,-2.811496504,0.005245297,neg,ns,0.395185177,Nfix,Nfix_Intron,8,84770828,84770877,84770828,84770829,50,+,CGTAGCTGAGTGGAGGCTAAAAATTAACCAGCCATCTCTGTTTCAATTTG,"Intron (Nfix-204/Nfix, intron 2 of 10)",8,84704712,84773396,68685,2,Nfix-204,2519,Nfix-204;Nfix-201;Nfix-202;Nfix-203;Nfix-205,Nfix;Nfix;Nfix;Nfix;Nfix,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,49,18032,ENSMUSG00000001911,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20768,cg14365239,0.00000163,0.000014,0.116320165,0.907474122,gain,ns,0.0000343,0.0000237,1.443376475,0.149924193,pos,ns,0.004498778,0.00695625,0.646724672,0.518288692,pos,ns,0.285428267,0.000111653,0.000239225,0.466728214,0.641022178,pos,ns,0.784086096,Gm5671,Gm5671_Intergenic_downstream,14,105085014,105085063,105085062,105085063,50,-,AAATCAAATTTTTCACAATTAGTTGAACAACAACTGTGACAGGTTTAGCG,Distal Intergenic,14,105043450,105044354,905,1,Gm5671-201,41613,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,12,435420,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6793,cg08670666,-0.00000354,0.0000146,-0.243272528,0.807955182,loss,ns,0.0000357,0.0000247,1.443362012,0.149928262,pos,ns,0.012925042,0.007246637,1.783591907,0.07546818,pos,ns,1.122236126,-0.000305654,0.000249211,-1.226486123,0.220946554,neg,ns,0.585755027,Gm48198,Gm48198_Intergenic_upstream,10,38553818,38553867,38553818,38553819,50,-,CGGGGACTTTTAACAGCTTTAATGACCACAGCAATTGATGGTTAAATCAA,Distal Intergenic,10,38433979,38434135,157,2,Gm48198-201,-119732,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,3,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1096,cg13446364,0.000194233,0.0000195,9.941137637,2.15E-20,gain,yes,-0.0000479,0.0000332,-1.443241596,0.149962146,neg,ns,0.014925118,0.009724428,1.534806727,0.125851253,pos,ns,0.900142457,-0.000638589,0.000334422,-1.90953032,0.05711661,neg,ns,0.152942132,Ptprg,Ptprg_fiveUTR,14,11554243,11554292,11554243,11554244,50,+,CGGACATGCGGAGGTTACTGGAACCGTGTTGGTGGATTTTGTTCCTGAAA,Promoter (<=1kb),14,11553532,12242041,688510,1,Ptprg-201,711,Ptprg-201;Ptprg-204;Ptprg-205,Ptprg;Ptprg;Ptprg,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,8,23,19270,ENSMUSG00000021745,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14264,cg12487068,-0.0000104,0.00000451,-2.312810784,0.02138755,loss,ns,-0.000011,0.00000766,-1.44297039,0.150038481,neg,ns,-0.005185158,0.002243066,-2.311638814,0.021452975,neg,ns,1.668512481,0.000274243,0.0000771,3.555183153,0.000436624,pos,ns,0.835099674,Chic2,Chic2_Exon,5,75011457,75011506,75011505,75011506,50,+,TGGTATAACCTATTGTTTTCCCATTCTAATAACTTCTCAATCGATCTTCG,"Exon (Chic2-201/Chic2, exon 4 of 6)",5,74997988,75044774,46787,2,Chic2-201,33268,Chic2-201;Chic2-202,Chic2;Chic2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,10,74277,ENSMUSG00000029229,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22458,cg02540683,-0.00000139,0.00000149,-0.935946794,0.350029112,loss,ns,-0.00000365,0.00000253,-1.442792573,0.150088547,neg,ns,0.0000472,0.000741522,0.063647942,0.949291577,pos,ns,0.022600372,0.0000237,0.0000255,0.928542766,0.353848515,pos,ns,0.965868472,Wwox,Wwox_Intron,8,114642353,114642402,114642401,114642402,50,+,CAAAGTCGATTTTCAAATTATGAACCTTGGAACAGAATATAACAACAGCG,"Intron (Wwox-201/Wwox, intron 5 of 8)",8,114439655,115352708,913054,1,Wwox-201,202698,Wwox-201;Wwox-207;Wwox-203;Wwox-206,Wwox;Wwox;Wwox;Wwox,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,32,32,80707,ENSMUSG00000004637,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12469,cg02208249,0.00000194,0.00000466,0.416356515,0.677437259,gain,ns,-0.0000114,0.00000791,-1.442635547,0.150132769,neg,ns,0.005335075,0.002318251,2.301336307,0.022035678,pos,ns,1.656873574,-0.0000815,0.0000797,-1.022195395,0.307485455,neg,ns,0.554218923,Msra,Msra_Intron,14,64417726,64417775,64417774,64417775,50,+,TTCTAAGTTTGAAAACCAAAAAGTTCTGAGTTTTTCTGTACCCCAGGACG,"Intron (Msra-201/Msra, intron 6 of 10)",14,64122625,64455903,333279,2,Msra-201,38128,Msra-201;Msra-205;Msra-204;Msra-202,Msra;Msra;Msra;Msra,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,4,110265,ENSMUSG00000054733,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1968,cg10993518,-0.0000119,0.00000479,-2.482504044,0.013575309,loss,ns,0.0000117,0.00000813,1.442498775,0.150171296,pos,ns,0.00243977,0.0023818,1.024338955,0.306473859,pos,ns,0.513606563,-0.0000914,0.0000819,-1.116124996,0.265233024,neg,ns,0.551721556,Cdh2,Cdh2_Intron,18,16713546,16713595,16713594,16713595,50,+,TTACCTTCTTTTGTATCAGACAAAAGATGGTAATTTACGTCTAATTAACG,"Intron (Cdh2-201/Cdh2, intron 2 of 15)",18,16588877,16809246,220370,2,Cdh2-201,95651,Cdh2-201,Cdh2,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,2,12558,ENSMUSG00000024304,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18957,cg00235789,-0.0000106,0.0000033,-3.218397055,0.001425573,loss,ns,0.0000081,0.00000561,1.442403382,0.150198171,pos,ns,0.00000861,0.001644654,0.005232725,0.995828275,pos,ns,0.001815547,0.0000364,0.0000566,0.642913719,0.520755325,pos,ns,0.925619615,Nfia,Nfia_Exon,4,98020837,98020886,98020837,98020838,50,-,CGCCTCAAGTCTGTGGAGGATGAAATGGACAGTCCTGGTGAGGAGCCATT,"Exon (Nfia-202/Nfia, exon 6 of 11)",4,97777608,98118871,341264,1,Nfia-202,243229,Nfia-202;Nfia-203;Nfia-205;Nfia-201;Nfia-204;Nfia-207;Nfia-206,Nfia;Nfia;Nfia;Nfia;Nfia;Nfia;Nfia,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,44,18027,ENSMUSG00000028565,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14510,cg25770133,-0.0000562,0.0000104,-5.407679923,0.000000128,loss,yes,0.0000255,0.0000176,1.442223932,0.150248738,pos,ns,-0.007565437,0.005169882,-1.463367341,0.144380073,neg,ns,0.840492742,0.000137379,0.000177792,0.772694387,0.440291991,pos,ns,0.647412129,Nrbp2,Nrbp2_threeUTR,15,76090458,76090507,76090458,76090459,50,+,CGTTCATGGCCTTGTGGTTCTTCTTGGTCTTTTTGAGGAATTGCTTGAGG,Promoter (<=1kb),15,76085518,76091505,5988,2,Nrbp2-205,998,Nrbp2-205;Nrbp2-208;Nrbp2-207;Nrbp2-201;Nrbp2-204;Nrbp2-206;Nrbp2-203;Nrbp2-202;Nrbp2-210;Nrbp2-209,Nrbp2;Nrbp2;Nrbp2;Nrbp2;Nrbp2;Nrbp2;Nrbp2;Nrbp2;Nrbp2;Nrbp2,0;0;-445;-445;-1464;-50;0;0;0;871,TRUE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,223649,ENSMUSG00000075590,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
3785,cg13561157,-0.00000453,0.00000114,-3.96292398,0.0000919,loss,ns,0.0000028,0.00000194,1.442030698,0.150303204,pos,ns,0.000194085,0.000568713,0.341271375,0.733130492,pos,ns,0.134818717,0.00000506,0.0000196,0.258817379,0.795947915,pos,ns,0.03767894,Abca2,Abca2_fiveUTR,2,25428768,25428817,25428816,25428817,50,+,CCATGGGCTTCCTGCACCAGCTGCAGCTGCTGCTCTGGAAGAACGTGACG,Promoter (<=1kb),2,25428703,25448540,19838,1,Abca2-201,65,Abca2-201;Fut7-204;Fut7-202;Fut7-203;Fut7-201;Fut7-205,Abca2;Fut7;Fut7;Fut7;Fut7;Fut7,0;5501;5389;5215;5074;4120,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,3,11305,ENSMUSG00000026944,conserved gene but different region,2,25428811,25429077,267,*,267,41,0.756554307,1.073130085,0.153558052,3.98E-40,CpGisland,TRUE,U2,Pr-W
451,cg23867746,0.0000172,0.00000391,4.394840828,0.0000152,gain,ns,0.00000958,0.00000664,1.441739716,0.150385249,pos,ns,0.006624533,0.001946089,3.404023733,0.000751322,pos,ns,3.124173918,-0.000178427,0.0000669,-2.666042823,0.008077458,neg,ns,0.060489047,Dync1i1,Dync1i1_Exon,6,6006269,6006318,6006317,6006318,50,+,GCACAACAAGCCGCTCTACTCCTTTGAAGACAATGCAGACTATGTGTACG,"Exon (Dync1i1-203/Dync1i1, exon 15 of 17)",6,5725639,6028039,302401,1,Dync1i1-203,280630,Dync1i1-203;Dync1i1-202;Dync1i1-204;Dync1i1-201;Dync1i1-206,Dync1i1;Dync1i1;Dync1i1;Dync1i1;Dync1i1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,9,13426,ENSMUSG00000029757,conserved gene and region,6,6006221,6006480,260,*,260,19,0.615384615,0.771995624,0.073076923,3.18E-12,CpGisland,TRUE,U2,Pr-W
15523,cg25276326,-0.00000594,0.00000169,-3.519382659,0.000497369,loss,ns,0.00000413,0.00000287,1.441627269,0.150416964,pos,ns,0.000388975,0.000839361,0.463417784,0.643390123,pos,ns,0.191525611,-0.0000336,0.0000289,-1.162861222,0.245780181,neg,ns,0.950361838,Gm7503,Gm7503_Intergenic_upstream,18,81548399,81548448,81548447,81548448,50,-,GATACTCTATCTCTTCACTGGGATTAGCATGAAAATTTTGATATGGATCG,Distal Intergenic,18,80997003,80997383,381,2,Gm7503-201,-551065,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,17,21,665124,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25637,cg09207292,-0.00000868,0.00000487,-1.78248648,0.075648506,loss,ns,0.0000119,0.00000828,1.441600719,0.150424453,pos,ns,0.005721341,0.002424311,2.359986377,0.018894947,pos,ns,1.723654324,-0.0000921,0.0000834,-1.104135218,0.27039078,neg,ns,0.925552369,Rap1gap,Rap1gap_Exon,4,137717950,137717999,137717950,137717951,50,-,CGGGGACCGAATCTGTGTACTGCAACTTCCGCAACAAGGAGATCATGTTT,"Exon (Rap1gap-211/Rap1gap, exon 11 of 11)",4,137680753,137717956,37204,1,Rap1gap-211,37197,Rap1gap-207;Rap1gap-213;Rap1gap-211;Rap1gap-203;Rap1gap-201;Rap1gap-206;Rap1gap-202;Rap1gap-208,Rap1gap;Rap1gap;Rap1gap;Rap1gap;Rap1gap;Rap1gap;Rap1gap;Rap1gap,53224;37197;0;0;0;30532;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,110351,ENSMUSG00000041351,conserved gene and region,4,137717919,137718036,118,*,118,9,0.576271186,0.91948052,0.076271186,0.00000366,CpGisland,TRUE,U11,Tr-P
16668,cg08156863,0.0000657,0.00000722,9.098599055,1.14E-17,gain,yes,-0.0000177,0.0000123,-1.441562587,0.15043521,neg,ns,0.009658221,0.00359254,2.68841034,0.007567416,pos,ns,2.121052407,-0.000329835,0.000123547,-2.669713691,0.007991686,neg,ns,0.032549018,Adamts5,Adamts5_fiveUTR,16,85901058,85901107,85901058,85901059,50,-,CGCTGTGAAGATGCGAGGAGGTGGAACAATGAATTTATAGCGGCATGCCA,Promoter (<=1kb),16,85856173,85901828,45656,2,Adamts5-201,721,Adamts5-201,Adamts5,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,3,23794,ENSMUSG00000022894,conserved gene and region,16,85900948,85901144,197,*,197,23,0.649746193,1.107282502,0.116751269,1.71E-19,CpGisland,TRUE,U3,Pr-B
27457,cg21007832,-0.0000084,0.00000294,-2.857633081,0.004556897,loss,ns,-0.0000072,0.00000499,-1.441345932,0.150496336,neg,ns,-0.000692875,0.001463133,-0.47355599,0.636149879,neg,ns,0.196440551,0.0000255,0.0000503,0.507687492,0.612033533,pos,ns,0.911521563,Pbx1,Pbx1_Intron,1,168269266,168269315,168269266,168269267,50,+,CGACAATCGGGGAGATGCTGAATTCATCTGACAGCATCTGATTAAGTCTA,"Intron (Pbx1-208/Pbx1, intron 2 of 7)",1,168119364,168432270,312907,2,Pbx1-208,162955,Pbx1-208;Pbx1-205;Pbx1-206;Pbx1-201;Pbx1-202;Pbx1-204,Pbx1;Pbx1;Pbx1;Pbx1;Pbx1;Pbx1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,84,18514,ENSMUSG00000052534,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17529,cg26709901,-0.0000132,0.00000465,-2.839791936,0.004812712,loss,ns,0.0000114,0.00000791,1.441191841,0.150539822,pos,ns,-0.001396369,0.002316481,-0.602797507,0.54708412,neg,ns,0.261945891,-0.0000446,0.0000797,-0.559736584,0.576063332,neg,ns,0.877180807,Nrxn1,Nrxn1_Exon,17,90704070,90704119,90704070,90704071,50,-,CGCAGATTCCTGGTGACTTTCACATCATGCCAGGCATTATCATTAAACTT,"Exon (Nrxn1-202/Nrxn1, exon 5 of 21)",17,90033631,91088907,1055277,2,Nrxn1-202,384788,Nrxn1-202;Nrxn1-207;Nrxn1-216;Nrxn1-209;Nrxn1-201;Nrxn1-206;Nrxn1-208;Nrxn1-210;Nrxn1-224;Nrxn1-205;Nrxn1-203,Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,22,27,18189,ENSMUSG00000024109,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6221,cg06077233,-0.0000117,0.0000036,-3.24164222,0.001317776,loss,ns,0.00000882,0.00000612,1.441176596,0.150544125,pos,ns,-0.002775431,0.001793055,-1.547878043,0.122671907,neg,ns,0.911254884,0.0000905,0.0000617,1.467984438,0.143122331,pos,ns,0.928303494,Tenm2,Tenm2_Intron,11,36420282,36420331,36420330,36420331,50,-,ATGGTTTATTGTCCTGACCTCATTAAAAGCATGTAATCCACGCAGTGCCG,"Intron (Tenm2-202/Tenm2, intron 4 of 30)",11,36006656,37235882,1229227,2,Tenm2-202,815551,Tenm2-202;Tenm2-208;Tenm2-201;Tenm2-204;Tenm2-205;Tenm2-206;Tenm2-203,Tenm2;Tenm2;Tenm2;Tenm2;Tenm2;Tenm2;Tenm2,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,47,84,23964,ENSMUSG00000049336,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24602,cg06646475,0.0000233,0.00000388,5.997053832,5.59E-09,gain,yes,-0.00000951,0.0000066,-1.441062481,0.150576336,neg,ns,0.000880425,0.001932937,0.455485373,0.649078954,pos,ns,0.187702472,0.0000825,0.0000665,1.241397937,0.215397274,pos,ns,0.072542606,Ccnd2,Ccnd2_Promoter,6,127152578,127152627,127152626,127152627,50,-,CCTCCCTCTATTTGCATAGCCAATAGCTCTGGGGCTCCTGCTACTGCGCG,Promoter (<=1kb),6,127146023,127152193,6171,2,Ccnd2-206,-434,Ccnd2-201;Ccnd2-206;Ccnd2-208;Ccnd2-202;Ccnd2-204;Ccnd2-205,Ccnd2;Ccnd2;Ccnd2;Ccnd2;Ccnd2;Ccnd2,-1518;0;-1571;-1545;-1571;-1617,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,4,4,12444,ENSMUSG00000000184,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
18188,cg02878041,0.00000292,0.00000117,2.506126768,0.012718214,gain,ns,-0.00000285,0.00000198,-1.44089104,0.150624739,neg,ns,-0.001340053,0.000580065,-2.310176419,0.021534857,neg,ns,1.666858007,0.0000296,0.0000199,1.483792254,0.138880041,pos,ns,0.984132008,Cacna1g,Cacna1g_Exon,11,94423675,94423724,94423675,94423676,50,-,CGCAGCGCTGGCTGAGCTGCCGGAAGCAATTACATCGTCCAGCATTAGAT,"Exon (Cacna1g-202/Cacna1g, exon 26 of 36)",11,94408391,94474100,65710,2,Cacna1g-202,50376,Cacna1g-202;Cacna1g-203;Cacna1g-205;Cacna1g-206;Cacna1g-207;Cacna1g-208;Cacna1g-209;Cacna1g-210;Cacna1g-211;Cacna1g-201;Cacna1g-204;Cacna1g-214;Cacna1g-212;Cacna1g-216,Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g,0;0;0;0;0;0;0;0;0;0;0;0;2738;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,18,12291,ENSMUSG00000020866,conserved gene and region,11,94423663,94423795,133,*,133,10,0.571428571,0.921690922,0.07518797,0.000000942,CpGisland,TRUE,U11,Tr-P
10413,cg15271917,-0.0000796,0.0000138,-5.753984146,2.09E-08,loss,yes,0.0000339,0.0000235,1.440854596,0.15063503,pos,ns,-0.002183012,0.006883188,-0.317151374,0.751342234,neg,ns,0.124162198,-0.000109722,0.000236712,-0.463523431,0.643314497,neg,ns,0.810918566,Creb5,Creb5_Intron,6,53463773,53463822,53463773,53463774,50,+,CGGTATAGGTTTTAAATTCAGCCTTGACTACACACATGTGTTGAGAGGTT,"Intron (Creb5-203/Creb5, intron 5 of 10)",6,53287270,53700376,413107,1,Creb5-203,176503,Creb5-203;Creb5-209;Creb5-204;Creb5-202;Creb5-201,Creb5;Creb5;Creb5;Creb5;Creb5,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,12,231991,ENSMUSG00000053007,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
10461,cg25231515,-0.0000274,0.00000866,-3.16290349,0.001716785,loss,ns,0.0000212,0.0000147,1.440823227,0.150643888,pos,ns,0.014458291,0.004312402,3.352723045,0.000899394,pos,ns,3.046050157,-0.000664289,0.000148303,-4.479262177,0.0000105,neg,ns,0.81293393,Npas3,Npas3_Intron,12,53647563,53647612,53647611,53647612,50,+,GGAGGCATAATTACTTAATTTTCCTGTGTTGCACGGCTTTTAAGTTCACG,"Intron (Npas3-204/Npas3, intron 3 of 10)",12,53248157,54069532,821376,1,Npas3-204,399406,Npas3-204;Npas3-201;Npas3-203,Npas3;Npas3;Npas3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,83,103,27386,ENSMUSG00000021010,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22225,cg26575674,-0.0000338,0.000015,-2.250385521,0.02512529,loss,ns,0.0000367,0.0000255,1.440651106,0.150692499,pos,ns,-0.009007662,0.007465668,-1.206544604,0.228527505,neg,ns,0.641061521,0.000178234,0.000256744,0.694210735,0.488069965,pos,ns,0.684884886,Cryba4,Cryba4_Intergenic_downstream,5,112050657,112050706,112050657,112050658,50,-,CGCTGTCTCCTAAAGTGCAAATTATCACCCGAAATGACAAGAATAATGAA,Distal Intergenic,5,112246494,112251162,4669,2,Cryba4-202,200505,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,8,12959,ENSMUSG00000066975,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1602,cg11791324,0.0000935,0.0000119,7.883596217,5.46E-14,gain,yes,-0.000029,0.0000202,-1.440548092,0.150721599,neg,ns,0.009343092,0.005905899,1.581993192,0.114670806,pos,ns,0.940547135,-0.000402435,0.000203103,-1.981430462,0.048426222,neg,ns,0.521846051,Gpr85,Gpr85_Exon,6,13835861,13835910,13835861,13835862,50,-,CGCCTCAGCTCCCTGTTTGAGAAAATGCAGACAAAAGGATTGATTCCTGC,"Exon (Gpr85-201/Gpr85, exon 4 of 4)",6,13834458,13839942,5485,2,Gpr85-201,4032,Gpr85-201;Gpr85-203;Gpr85-202;Gpr85-204,Gpr85;Gpr85;Gpr85;Gpr85,0;0;0;3585,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,64450,ENSMUSG00000048216,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7852,cg24079953,-0.0000109,0.00000207,-5.287465599,0.000000235,loss,yes,-0.00000506,0.00000351,-1.440448475,0.150749743,neg,ns,-0.001813216,0.00102887,-1.762337111,0.078997812,neg,ns,1.102384935,-0.00000895,0.0000354,-0.252863764,0.800541084,neg,ns,0.948063193,Gm20538,Gm20538_Intron,19,44550797,44550846,44550845,44550846,50,-,CACTCAGCCTCTAATGGTTCCACCACTAAAGTGGCCCAGCAAATGAGGCG,"Intron (Gm20538-201/Gm20538, intron 1 of 1)",19,44543722,44552831,9110,2,Gm20538-201,1985,Gm20538-201;Ndufb8-209;Ndufb8-201;Ndufb8-205;Ndufb8-202;Ndufb8-208;Ndufb8-204;Ndufb8-207;Ndufb8-206;Ndufb8-203;Sec31b-201;Sec31b-202,Gm20538;Ndufb8;Ndufb8;Ndufb8;Ndufb8;Ndufb8;Ndufb8;Ndufb8;Ndufb8;Ndufb8;Sec31b;Sec31b,0;0;0;0;0;4140;4558;4559;4580;4577;-4933;-4950,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9604,cg13815701,-0.000000302,0.00000189,-0.160026863,0.872964134,loss,ns,0.00000462,0.00000321,1.440233379,0.150810526,pos,ns,0.003572838,0.000939968,3.801019139,0.000173481,pos,ns,3.760747736,-0.000110504,0.0000323,-3.418485043,0.00071389,neg,ns,0.954768109,Epc2,Epc2_Exon,2,49488749,49488798,49488797,49488798,50,+,ATGGTCATTCCTGTTCCTGAGGCAGAGAGCAACGTCAACTATTACAATCG,"Exon (Epc2-201/Epc2, exon 2 of 14)",2,49451486,49551948,100463,1,Epc2-201,37263,Epc2-201,Epc2,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,14,227867,ENSMUSG00000069495,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13939,cg18174545,-0.00000293,0.00000136,-2.155386783,0.031901108,loss,ns,0.00000333,0.00000231,1.440214862,0.15081576,pos,ns,0.001285362,0.00067689,1.898924047,0.058502755,pos,ns,1.232823681,-0.000056,0.0000233,-2.406336205,0.016698323,neg,ns,0.963271795,Dcun1d4,Dcun1d4_threeUTR,5,73560623,73560672,73560623,73560624,50,-,CGTCAGTATTTGCATTACATTCATAAAAGTGTGCAAGTCCTGTGACTCCC,3' UTR,5,73481000,73560794,79795,1,Dcun1d4-202,79623,Dcun1d4-202;Dcun1d4-204;Dcun1d4-203;Dcun1d4-201,Dcun1d4;Dcun1d4;Dcun1d4;Dcun1d4,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,3,100737,ENSMUSG00000051674,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12014,cg05175614,-0.00000179,0.00000115,-1.559384319,0.119925719,loss,ns,0.0000028,0.00000195,1.440107229,0.150846184,pos,ns,0.000758795,0.000569906,1.331437806,0.184023229,pos,ns,0.735127353,0.0000207,0.0000196,1.058229829,0.290774563,pos,ns,0.032285401,Anp32a,Anp32a_Exon,9,62341516,62341565,62341516,62341517,50,+,CGGATTCATTTAGAGCTGCGGAACAGGACGCCCTCTGATGTGAGCATTTG,Promoter (<=1kb),9,62341293,62377701,36409,1,Anp32a-207,223,Anp32a-207;Anp32a-201;Anp32a-203;Anp32a-205;Anp32a-210;Anp32a-208;Anp32a-202,Anp32a;Anp32a;Anp32a;Anp32a;Anp32a;Anp32a;Anp32a,0;0;0;0;-899;-2498;-3234,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,9,11737,ENSMUSG00000032249,mapped to different genes,9,62340767,62341614,848,*,848,72,0.632075472,0.85274934,0.08490566,2.37E-49,CpGisland,TRUE,U1,Pr-A
22030,cg00569374,0.00000277,0.00000171,1.620332327,0.106177645,gain,ns,0.00000418,0.0000029,1.440081447,0.150853472,pos,ns,0.000826875,0.00084963,0.973217605,0.331203937,pos,ns,0.479904509,-0.0000222,0.0000292,-0.759739674,0.447987573,neg,ns,0.95732029,Elavl4,Elavl4_Exon,4,110211514,110211563,110211562,110211563,50,+,TCTGGCTGGGGTTGTTGGCAAACTTCACAGTAATCGGTTCCGTAGCACCG,"Exon (Elavl4-204/Elavl4, exon 5 of 7)",4,110203722,110287527,83806,2,Elavl4-204,75964,Elavl4-204;Elavl4-201;Elavl4-203;Elavl4-202;Elavl4-205;Elavl4-206;Elavl4-207;Elavl4-211;Elavl4-208,Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,36,15572,ENSMUSG00000028546,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13456,cg22110517,-0.00000618,0.00000287,-2.150160012,0.032315772,loss,ns,-0.00000703,0.00000488,-1.440063769,0.150858469,neg,ns,0.0000361,0.001429474,0.025251903,0.979870284,pos,ns,0.008831413,-0.0000635,0.0000492,-1.291292439,0.19756432,neg,ns,0.952967231,Mink1,Mink1_threeUTR,11,70613665,70613714,70613713,70613714,50,+,CAAGTTTACTTCATGACTCTGAACCGTAACTGCATCATGAACTGGTGACG,3' UTR,11,70562881,70614482,51602,1,Mink1-201,50784,4930544D05Rik-204;4930544D05Rik-201;4930544D05Rik-202;4930544D05Rik-203;Chrne-202;Chrne-201;Chrne-204;Chrne-203;Mink1-201;Mink1-202;Mink1-205;Mink1-203;Mink1-204;Mink1-208;Mink1-211;Mink1-209;Mink1-206,4930544D05Rik;4930544D05Rik;4930544D05Rik;4930544D05Rik;Chrne;Chrne;Chrne;Chrne;Mink1;Mink1;Mink1;Mink1;Mink1;Mink1;Mink1;Mink1;Mink1,-2134;-2180;-2183;-2196;5480;5502;1959;1983;0;0;0;0;0;0;0;3927;3614,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,7,50932,ENSMUSG00000020827,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
179,cg19173326,-0.00000157,0.00000441,-0.355859958,0.722187485,loss,ns,0.0000108,0.0000075,1.440020997,0.150870561,pos,ns,0.003044397,0.002195974,1.386353887,0.166635132,pos,ns,0.778233429,-0.0000801,0.0000755,-1.060282274,0.289841583,neg,ns,0.909313685,Fzd1,Fzd1_Intergenic_downstream,5,4580030,4580079,4580030,4580031,50,-,CGATTACTGCCTCGGTGGCAAGAGGATGGCTTTTGATCTCTTAACATATT,Distal Intergenic,5,4753839,4758035,4197,2,Fzd1-201,178005,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,5,14362,ENSMUSG00000044674,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15758,cg10833170,-0.0000638,0.0000119,-5.377216187,0.000000149,loss,yes,0.000029,0.0000202,1.439968824,0.150885312,pos,ns,0.014304006,0.005907767,2.421220579,0.016042378,pos,ns,1.79473125,-0.000762918,0.000203168,-3.755118309,0.000206887,neg,ns,0.54286923,Zfp516,Zfp516_Intergenic_downstream,18,83186015,83186064,83186015,83186016,50,-,CGGAGTCAGAGCATTCTCTAGGGCAGGAGCATCCGGAGTTCAATGTGACA,Distal Intergenic,18,82987808,83001700,13893,1,Zfp516-205,198256,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,6,329003,ENSMUSG00000058881,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10753,cg19227263,0.00000941,0.0000014,6.744346031,7.53E-11,gain,yes,0.00000341,0.00000237,1.439908809,0.150902281,pos,ns,0.00160555,0.000694439,2.312011008,0.021432178,pos,ns,1.668933686,-0.0000228,0.0000239,-0.955842209,0.339896745,neg,ns,0.011689017,Jph4,Jph4_Exon,14,55115024,55115073,55115024,55115025,50,-,CGGTACGTCCAGCGGCTCTTGCGCTCCACGCCCAGCCCTTCGCGCTTGCC,"Exon (Jph4-201/Jph4, exon 2 of 6)",14,55106826,55116935,10110,2,Jph4-201,1862,Jph4-201;Jph4-202;Jph4-203;Jph4-204,Jph4;Jph4;Jph4;Jph4,0;0;-4466;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,11,319984,ENSMUSG00000022208,conserved gene and region,14,55114804,55115549,746,*,746,72,0.71849866,0.747869674,0.096514745,1.44E-53,CpGisland,TRUE,U3,Pr-B
24536,cg05552755,0.00000682,0.00000394,1.730867703,0.084470403,gain,ns,-0.00000963,0.00000669,-1.439797039,0.150933888,neg,ns,0.000922898,0.001959676,0.470944404,0.638011654,pos,ns,0.195171389,0.00000374,0.0000674,0.055559708,0.955728354,pos,ns,0.080288605,Doc2a,Doc2a_Exon,7,126848645,126848694,126848645,126848646,50,+,CGTGTGCCCCGGGCCCATCCGGCCCATCCGCCAGATCTCTGACTACTTCC,"Exon (Doc2a-204/Doc2a, exon 2 of 4)",7,126847416,126849525,2110,1,Doc2a-204,1229,Doc2a-204;Doc2a-201;Doc2a-207;Doc2a-209;Doc2a-206;Doc2a-205;Doc2a-203;Doc2a-202;Doc2a-208;Ino80e-211;Ino80e-201;Ino80e-202;Ino80e-203;Ino80e-204;Ino80e-214;Ino80e-208;Ino80e-213;Ino80e-215;Ino80e-212,Doc2a;Doc2a;Doc2a;Doc2a;Doc2a;Doc2a;Doc2a;Doc2a;Doc2a;Ino80e;Ino80e;Ino80e;Ino80e;Ino80e;Ino80e;Ino80e;Ino80e;Ino80e;Ino80e,0;0;0;0;0;0;0;0;-103;12577;12769;12992;13144;13683;13166;13038;9036;13667;13089,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,13446,ENSMUSG00000052301,conserved gene and region,7,126848542,126848748,207,*,207,15,0.676328502,0.634839501,0.072463768,1.06E-09,CpGisland,TRUE,U13,Hc-P
3636,cg16288777,-0.00000166,0.00000152,-1.094595703,0.274543538,loss,ns,0.00000371,0.00000258,1.439737423,0.150950749,pos,ns,0.002727741,0.000754628,3.614681152,0.000350811,pos,ns,3.454926977,-0.0000809,0.000026,-3.118398632,0.001989051,neg,ns,0.960443985,Med23,Med23_Exon,10,24883221,24883270,24883269,24883270,50,-,GGTATGTTCACAACCTTACTGTTGTATTGTGACTAACGATACGCTGGCCG,"Exon (Med23-202/Med23, exon 11 of 30)",10,24869986,24913681,43696,1,Med23-202,13235,Med23-202;Med23-210;Med23-209;Med23-201;Med23-207;Med23-205;Med23-206,Med23;Med23;Med23;Med23;Med23;Med23;Med23,0;0;0;0;0;12911;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,2,70208,ENSMUSG00000019984,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4426,cg11900861,0.0000431,0.00000419,10.29990245,1.37E-21,gain,yes,-0.0000102,0.00000711,-1.439704547,0.150960047,neg,ns,0.000200298,0.002084342,0.096096677,0.923505883,pos,ns,0.034560334,0.000141812,0.0000717,1.97839917,0.048768671,pos,ns,0.117875852,Gm11362,Gm11362_Exon,13,28885304,28885353,28885352,28885353,50,-,TCATCAGAGTTCCCCCTTTTGTTCCAAGTCCCGGAGCAGACAAAGAGGCG,"Exon (2610307P16Rik-205/2610307P16Rik-205, exon 1 of 8)",13,28836875,28837724,850,1,Gm11362-201,48478,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,626683,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
19796,cg11180230,-0.00000424,0.00000308,-1.375361734,0.170012371,loss,ns,0.00000753,0.00000523,1.439639284,0.150978507,pos,ns,-0.001944323,0.001533184,-1.268159842,0.205692448,neg,ns,0.686781653,0.0000136,0.0000527,0.257021977,0.797332314,pos,ns,0.921574783,Msl2,Msl2_threeUTR,9,101102213,101102262,101102213,101102214,50,-,CGGCAGCTATGGTTCTGTTGGTTTAACTTGCCGGAGCTCCTGCATATAGA,3' UTR,9,101074762,101104800,30039,1,Msl2-201,27451,Msl2-202;Msl2-201;Ppp2r3a-202;Ppp2r3a-201,Msl2;Msl2;Ppp2r3a;Ppp2r3a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,19,77853,ENSMUSG00000066415,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22877,cg00464803,0.0000425,0.0000152,2.793581994,0.005537123,gain,ns,-0.0000372,0.0000258,-1.439614479,0.150985524,neg,ns,0.00847412,0.007564556,1.120240213,0.263478545,pos,ns,0.579254744,-0.000199603,0.000260144,-0.767278832,0.443499727,neg,ns,0.522173949,Meis2,Meis2_Exon,2,116061538,116061587,116061586,116061587,50,-,GGTCGCCAGCTCGCACTTCTCAAAGACCAGAGCTAACAGAGGAAACAACG,"Exon (Meis2-201/Meis2, exon 3 of 12)",2,115863064,116065047,201984,2,Meis2-201,3460,Meis2-201;Meis2-203;Meis2-205;Meis2-206;Meis2-204;Meis2-202;Meis2-213;Meis2-210;Meis2-209;Meis2-212,Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2,0;0;0;0;0;0;0;0;0;-2696,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,15,97,17536,ENSMUSG00000027210,conserved gene but different region,2,116061432,116061626,195,*,195,18,0.615384615,0.976084538,0.092307692,2.11E-13,CpGisland,TRUE,NA,NRS
25477,cg11522105,0.00000319,0.00000891,0.358065579,0.720537927,gain,ns,0.0000218,0.0000151,1.439609139,0.150987035,pos,ns,0.004466423,0.004432637,1.007622286,0.314421665,pos,ns,0.502487536,-0.0000164,0.000152438,-0.107354277,0.91457737,neg,ns,0.815455525,Plp1,Plp1_Exon,X,136831995,136832044,136832043,136832044,50,-,CTTCTTCCTTTATGGGGCCCTCCTGCTGGCTGAGGGCTTCTACACCACCG,"Exon (Plp1-201/Plp1, exon 3 of 7)",20,136822671,136839733,17063,1,Plp1-201,9324,Plp1-201;Plp1-202;Plp1-203;Plp1-204,Plp1;Plp1;Plp1;Plp1,0;0;0;-1207,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,8,18823,ENSMUSG00000031425,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16275,cg01603001,0.0000183,0.00000605,3.027496934,0.002672858,gain,ns,0.0000148,0.0000103,1.439440704,0.151034688,pos,ns,0.008452754,0.003010663,2.80760551,0.005307467,pos,ns,2.275112671,-0.000206394,0.000103536,-1.993440437,0.047089323,neg,ns,0.321861566,Nfix,Nfix_threeUTR,8,84706832,84706881,84706880,84706881,50,+,CTGACCCTGTTTAGCCAACCGAACTGAAAAATCATTGCACTTTGACCGCG,3' UTR,8,84699876,84708218,8343,2,Nfix-207,1337,Lyl1-203;Lyl1-204;Lyl1-201;Lyl1-202;Nfix-207;Nfix-208;Nfix-204;Nfix-201;Nfix-202;Nfix-203;Nfix-206,Lyl1;Lyl1;Lyl1;Lyl1;Nfix;Nfix;Nfix;Nfix;Nfix;Nfix;Nfix,5383;0;5288;5051;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,5,49,18032,ENSMUSG00000001911,conserved gene and region,8,84706661,84707081,421,*,421,39,0.700712589,0.790743595,0.09263658,1.47E-28,CpGisland,TRUE,U6,En-Sp
969,cg10410822,0.000110182,0.0000167,6.614859899,1.63E-10,gain,yes,-0.0000407,0.0000283,-1.439429223,0.151037937,neg,ns,0.029381229,0.008290259,3.544066582,0.000454698,pos,ns,3.342276604,-0.001069615,0.000285101,-3.751700299,0.000209604,neg,ns,0.325815071,Qk,Qk_threeUTR,17,10209488,10209537,10209488,10209489,50,-,CGGACAAGTGCCTCAGCTCGCTGCACTGACGACAGGCAAGCAAAGGCGAT,3' UTR,17,10202601,10319380,116780,2,Qk-204,109843,Qk-204;Qk-202;Qk-203;Qk-201;Qk-206;Qk-205,Qk;Qk;Qk;Qk;Qk;Qk,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,12,17,19317,ENSMUSG00000062078,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4949,cg06428056,0.00000333,0.00000364,0.914082897,0.361383691,gain,ns,-0.00000891,0.00000619,-1.439246729,0.151089582,neg,ns,-0.004437984,0.001813497,-2.447196445,0.014952015,neg,ns,1.82530029,0.000078,0.0000624,1.251192937,0.211807495,pos,ns,0.911062947,Ass1,Ass1_Intron,2,31516724,31516773,31516772,31516773,50,-,TACATCGCTGACTTGAAAGCCCTTGAGTGACAGCGTCACAGGGACCAGCG,"Intron (Ass1-201/Ass1, intron 14 of 15)",2,31470207,31520672,50466,1,Ass1-201,46517,Ass1-201;Ass1-204;Ass1-203,Ass1;Ass1;Ass1,0;0;-1717,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,9,11898,ENSMUSG00000076441,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11963,cg08373745,0.0000565,0.00000407,13.89225194,1.91E-34,gain,yes,-0.00000995,0.00000691,-1.439146355,0.151117993,neg,ns,0.003195356,0.002025775,1.577349784,0.115734936,pos,ns,0.936535525,0.0000835,0.0000697,1.19830541,0.231713445,pos,ns,0.110284751,Tbr1,Tbr1_Exon,2,61804939,61804988,61804987,61804988,50,+,GTCCAGAGAAGTAAACTCTCTCCTGTCTTGGACGGGGTCTCTGAGCTTCG,Promoter (<=1kb),2,61804453,61814114,9662,1,Tbr1-201,486,Psmd14-201;Psmd14-208;Psmd14-202;Tbr1-204;Tbr1-201;Tbr1-202;Tbr1-203,Psmd14;Psmd14;Psmd14;Tbr1;Tbr1;Tbr1;Tbr1,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,24,27,21375,ENSMUSG00000035033,conserved gene and region,2,61804938,61805248,311,*,311,21,0.620578778,0.763323983,0.067524116,9.07E-13,CpGisland,TRUE,U13,Hc-P
2026,cg00752968,-0.0000088,0.00000675,-1.30407658,0.193174932,loss,ns,0.0000165,0.0000115,1.439068649,0.15113999,pos,ns,-0.002209776,0.00335738,-0.658184809,0.51090787,neg,ns,0.291657408,-0.0000585,0.00011546,-0.506931337,0.612563389,neg,ns,0.851984239,Gm12015,Gm12015_Intergenic_upstream,11,17370512,17370561,17370560,17370561,50,-,TTAGGTTTCTGGTTATCAGGAGCCCTAAATAGACATGAATTACAAGAACG,Distal Intergenic,11,17297577,17298419,843,2,Gm12015-201,-72142,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,6,382486,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23300,cg06548914,-0.00000261,0.00000316,-0.824030018,0.410556033,loss,ns,-0.00000774,0.00000538,-1.439029363,0.151151112,neg,ns,-0.004136233,0.001574804,-2.626507286,0.009055099,neg,ns,2.04310681,0.0000757,0.0000542,1.398173298,0.163060534,pos,ns,0.93232923,Eri3,Eri3_Intron,4,117664995,117665044,117665043,117665044,50,-,TATTCCCTAATTTGTAAAAATTCCCTCTTTATCTGATCCCAATCAGGGCG,"Intron (Eri3-201/Eri3, intron 8 of 8)",4,117550365,117674297,123933,1,Eri3-201,114630,Eri3-201;Eri3-206;Eri3-203,Eri3;Eri3;Eri3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,82,97,140546,ENSMUSG00000033423,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
623,cg20490705,-0.00000617,0.00000414,-1.491079109,0.136957558,loss,ns,-0.0000101,0.00000703,-1.438978183,0.151165603,neg,ns,-0.000435261,0.002060471,-0.21124354,0.832836037,neg,ns,0.079440491,0.00000991,0.0000709,0.139805695,0.888904302,pos,ns,0.941672759,Rbfox1,Rbfox1_Exon,16,7292157,7292206,7292205,7292206,50,+,TGTTTTCCCTTCTCCCTCCTGCATGCAGGGATTTGGTTTCGTAACTTTCG,"Exon (Rbfox1-205/Rbfox1, exon 8 of 12)",16,5885355,7353045,1467691,1,Rbfox1-205,1406802,Rbfox1-205;Rbfox1-201;Rbfox1-202;Rbfox1-203;Rbfox1-208;Rbfox1-207,Rbfox1;Rbfox1;Rbfox1;Rbfox1;Rbfox1;Rbfox1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,35,268859,ENSMUSG00000008658,conserved gene and region,16,7292196,7292275,80,*,80,9,0.5375,1.773399015,0.1125,0.00000013,CpGisland,TRUE,U15,NS
10756,cg21547391,0.00000351,0.000000586,5.989231325,5.84E-09,gain,yes,-0.00000143,0.000000996,-1.438968732,0.151168279,neg,ns,0.000529888,0.000291864,1.815532107,0.070408247,pos,ns,1.152376469,-0.0000202,0.00001,-2.007705969,0.045542008,neg,ns,0.012335534,Jph4,Jph4_Exon,14,55115190,55115239,55115190,55115191,50,-,CGCCGTAGCCATGTGCCCGCCCCGCCTCCCAGCCCCCCACGTAGCAGCCC,"Exon (Jph4-201/Jph4, exon 2 of 6)",14,55106826,55116935,10110,2,Jph4-201,1696,Jph4-201;Jph4-202;Jph4-203;Jph4-204,Jph4;Jph4;Jph4;Jph4,0;0;-4632;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,11,319984,ENSMUSG00000022208,conserved gene and region,14,55114804,55115549,746,*,746,72,0.71849866,0.747869674,0.096514745,1.44E-53,CpGisland,TRUE,U3,Pr-B
6691,cg17634341,-0.0000186,0.00000762,-2.437826192,0.015337535,loss,ns,0.0000186,0.0000129,1.438839331,0.151204922,pos,ns,0.004899638,0.003790193,1.29271473,0.197072386,pos,ns,0.705374225,-0.00021668,0.000130344,-1.66236154,0.097451058,neg,ns,0.616179802,Ubr5,Ubr5_Exon,15,38037988,38038037,38037988,38037989,50,-,CGCAACAGCTCAGAGTCTCTCTCTAAGGGAAGAAGGAGAACTGGTATGCA,"Exon (Ubr5-201/Ubr5, exon 9 of 59)",15,37967859,38078854,110996,2,Ubr5-201,40817,Ubr5-201;Ubr5-204,Ubr5;Ubr5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,6,70790,ENSMUSG00000037487,conserved gene and region,15,38037952,38037989,38,*,38,6,0.631578947,1.78125,0.157894737,0.00000546,CpGisland,TRUE,U10,Tr-S
6347,cg09084493,-0.00000249,0.00000861,-0.288896411,0.772853742,loss,ns,0.000021,0.0000146,1.43875353,0.151229222,pos,ns,-0.002967489,0.004283235,-0.692815058,0.488944305,neg,ns,0.310740608,0.000289403,0.0001473,1.964719238,0.050339628,pos,ns,0.798305302,Tshz3,Tshz3_Intergenic_downstream,7,36945410,36945459,36945410,36945411,50,+,CGTCAGCAGTCTCTGGAATCTTATTGTCGAAAACTTTATCTAGTTGTAAC,Distal Intergenic,7,36698217,36702113,3897,1,Tshz3-202,247193,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,21,58,243931,ENSMUSG00000021217,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9226,cg22674065,-0.0000139,0.0000049,-2.835017928,0.004883344,loss,ns,-0.000012,0.00000832,-1.438694476,0.151245948,neg,ns,-0.001232622,0.00243856,-0.505471232,0.613587095,neg,ns,0.212123783,-0.000099,0.0000839,-1.180120615,0.238857011,neg,ns,0.909128256,Cadm1,Cadm1_Intron,9,47707343,47707392,47707343,47707344,50,+,CGGTTTAAACTGCTGTAGAAATACAATTATGAGCAGCCAAGAGCAAATCT,"Intron (Cadm1-204/Cadm1, intron 1 of 9)",9,47530173,47853385,323213,1,Cadm1-204,177170,Cadm1-204;Cadm1-209;Cadm1-206;Cadm1-202;Cadm1-203;Cadm1-207;Cadm1-205;Cadm1-211;Cadm1-210;Cadm1-208;Cadm1-201,Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,77,54725,ENSMUSG00000032076,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11892,cg07254551,-0.0000112,0.00000297,-3.783038437,0.000185909,loss,ns,-0.00000726,0.00000505,-1.438647034,0.151259387,neg,ns,-0.003764986,0.001478603,-2.546312615,0.01137026,neg,ns,1.944229587,0.00000608,0.0000508,0.119539433,0.904925431,pos,ns,0.907372724,Epn2,Epn2_Exon,11,61544247,61544296,61544247,61544248,50,-,CGCTGGCTCAGTGGCTGCAGCTCCTCACTCTGACCCAGCGGGGCCCCTGT,"Exon (Epn2-203/Epn2, exon 4 of 11)",11,61517249,61579669,62421,2,Epn2-202,35373,Epn2-202;Epn2-203;Epn2-201;Epn2-204;Epn2-212;Epn2-213;Epn2-209;Epn2-211;Epn2-210;Epn2-208;Epn2-207;Epn2-206,Epn2;Epn2;Epn2;Epn2;Epn2;Epn2;Epn2;Epn2;Epn2;Epn2;Epn2;Epn2,0;0;0;0;0;0;0;0;0;35362;35362;35366,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,13855,ENSMUSG00000001036,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11562,cg03249015,-0.0000102,0.00000625,-1.625276378,0.105119864,loss,ns,0.0000153,0.0000106,1.438618847,0.151267372,pos,ns,0.003220329,0.003108845,1.035860245,0.301074696,pos,ns,0.521325743,-0.0000424,0.000106913,-0.396499807,0.692009145,neg,ns,0.877886948,Fbxo33,Fbxo33_threeUTR,12,59200869,59200918,59200869,59200870,50,+,CGCATGGTATGTGCTCACTGGAGACAAAACAGTGCACACCTGTCAAAAGG,3' UTR,12,59200655,59219725,19071,2,Fbxo33-201,18807,Fbxo33-201;Fbxo33-204;Fbxo33-202;Fbxo33-203,Fbxo33;Fbxo33;Fbxo33;Fbxo33,0;0;0;17883,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,7,11,70611,ENSMUSG00000035329,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4585,cg23082716,0.000026,0.0000051,5.090375747,0.000000621,gain,yes,-0.0000125,0.00000867,-1.43849078,0.151303655,neg,ns,0.001127978,0.002540769,0.443951284,0.65738753,pos,ns,0.182178538,-0.0000523,0.0000874,-0.598478231,0.549957905,neg,ns,0.730480049,Cercam,Cercam_Intergenic_upstream,2,29856728,29856777,29856776,29856777,50,-,GAACAAAACGCTTTGAAATGCCTCCTCTCCATCACTGCCAACATTGTCCG,Distal Intergenic,2,29869164,29871355,2192,1,Cercam-204,-12436,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,99151,ENSMUSG00000039787,conserved gene but different region,2,29856688,29856817,130,*,130,11,0.661538462,0.777173913,0.084615385,6.39E-08,CpGisland,TRUE,U11,Tr-P
9231,cg21604300,-0.000000342,0.00000222,-0.15405499,0.877666619,loss,ns,-0.00000543,0.00000378,-1.438383454,0.151334067,neg,ns,-0.00155933,0.001106409,-1.409360629,0.159730913,neg,ns,0.796611026,-0.00000669,0.000038,-0.175925915,0.86046701,neg,ns,0.935594995,Cadm1,Cadm1_Exon,9,47799464,47799513,47799512,47799513,50,+,ATCTGCCAGGTGGAGCACCCTGCGGTCACTGGAAACCTGCAGACCCAGCG,"Exon (Cadm1-204/Cadm1, exon 5 of 10)",9,47530173,47853385,323213,1,Cadm1-204,269291,Cadm1-204;Cadm1-209;Cadm1-206;Cadm1-202;Cadm1-203;Cadm1-205;Cadm1-211;Cadm1-208;Cadm1-201,Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,13,77,54725,ENSMUSG00000032076,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1283,cg18980531,0.000000833,0.000000791,1.053189646,0.293074285,gain,ns,0.00000193,0.00000134,1.43831287,0.15135407,pos,ns,0.000360899,0.00039352,0.917102885,0.359801651,pos,ns,0.443936849,-0.00000827,0.0000135,-0.610801341,0.541778673,neg,ns,0.981587435,Zfr,Zfr_Exon,15,12170850,12170899,12170898,12170899,50,-,CGTCTTGGACAGGCAAAAATGCCTTGACGCTCTGGCTGCTCTACGCCACG,"Exon (Zfr-201/Zfr, exon 16 of 20)",15,12117831,12185683,67853,1,Zfr-201,53019,Zfr-201;Zfr-207;Zfr-208;Zfr-209;Zfr-206,Zfr;Zfr;Zfr;Zfr;Zfr,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,12,22763,ENSMUSG00000022201,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4871,cg22284224,-0.00000882,0.00000402,-2.195829669,0.028844774,loss,ns,0.00000981,0.00000682,1.438307647,0.15135555,pos,ns,0.004613923,0.001998446,2.308755451,0.021614682,pos,ns,1.665251155,-0.00016691,0.0000687,-2.428612133,0.015725176,neg,ns,0.926501565,Pbrm1,Pbrm1_threeUTR,14,31105385,31105434,31105433,31105434,50,+,TGCAGGCCAACTGAAATACCAGAAAATGACATTCTGCTTTGTGAGAGCCG,3' UTR,14,31019138,31120041,100904,1,Pbrm1-208,86247,Pbrm1-208;Pbrm1-207;Pbrm1-206;Pbrm1-203;Pbrm1-217;Pbrm1-212;Pbrm1-202;Pbrm1-205;Pbrm1-210;Pbrm1-201;Pbrm1-204;Smim4-204;Smim4-202,Pbrm1;Pbrm1;Pbrm1;Pbrm1;Pbrm1;Pbrm1;Pbrm1;Pbrm1;Pbrm1;Pbrm1;Pbrm1;Smim4;Smim4,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,5,66923,ENSMUSG00000042323,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14574,cg21193029,-0.0000129,0.0000054,-2.395828634,0.017175525,loss,ns,0.0000132,0.00000918,1.438264589,0.151367753,pos,ns,0.00098305,0.002688772,0.365612945,0.714903262,pos,ns,0.145752721,-0.0000573,0.0000925,-0.620063288,0.535671641,neg,ns,0.594593022,Osbpl6,Osbpl6_Exon,2,76555935,76555984,76555935,76555936,50,-,CGATGGAGAACAAAAAGTGTCAGCAAAGATACAAAAATACAACTGCAGGT,"Exon (Osbpl6-201/Osbpl6, exon 11 of 27)",2,76406538,76600643,194106,1,Osbpl6-201,149397,Osbpl6-201;Osbpl6-202;Osbpl6-203;Osbpl6-208,Osbpl6;Osbpl6;Osbpl6;Osbpl6,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,3,99031,ENSMUSG00000042359,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1028,cg06025405,0.00000363,0.00000278,1.303927281,0.193225775,gain,ns,-0.0000068,0.00000473,-1.438235454,0.151376012,neg,ns,-0.004716213,0.001384983,-3.405249077,0.000748081,neg,ns,3.126051585,0.0000719,0.0000476,1.509001309,0.132316946,pos,ns,0.945319481,Fhit,Fhit_Intron,14,10987264,10987313,10987312,10987313,50,+,CCGTCTTAAAATCAGATTCCAGCTTCTAATTAATTTTTATTCACCCATCG,"Intron (Fhit-206/Fhit, intron 2 of 8)",14,9550100,11162032,1611933,2,Fhit-206,174719,Fhit-206;Fhit-201;Fhit-205;Fhit-203;Fhit-207;Fhit-202,Fhit;Fhit;Fhit;Fhit;Fhit;Fhit,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,6,14198,ENSMUSG00000060579,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4885,cg11524169,-0.00000288,0.00000138,-2.082973842,0.038072916,loss,ns,0.00000338,0.00000235,1.437906397,0.151469302,pos,ns,-0.000154583,0.000687811,-0.224746768,0.822324347,neg,ns,0.084956851,0.00000242,0.0000237,0.102461812,0.918456369,pos,ns,0.960405255,Gm29609,Gm29609_fiveUTR,5,31174430,31174479,31174430,31174431,50,+,CGGCCTCCCCCAGGGCAACATAGCCGACCCCGCAGGTATCCATCAGCACC,5' UTR,5,31151142,31179911,28770,2,Gm29609-201,5432,Gm29609-201;Gtf3c2-208;Gtf3c2-201;Gtf3c2-210;Gtf3c2-211;Gtf3c2-207;Gtf3c2-202;Gtf3c2-206;Gtf3c2-205;Gtf3c2-209,Gm29609;Gtf3c2;Gtf3c2;Gtf3c2;Gtf3c2;Gtf3c2;Gtf3c2;Gtf3c2;Gtf3c2;Gtf3c2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,2,115482680,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4110,cg15739295,-0.0000592,0.0000103,-5.769041949,1.93E-08,loss,yes,0.0000251,0.0000174,1.437657824,0.151539804,pos,ns,-0.009007333,0.005105329,-1.764300032,0.078666288,neg,ns,1.10421134,0.000359497,0.000175572,2.04757571,0.041444071,pos,ns,0.642298587,Gm45647,Gm45647_Intergenic_downstream,8,26808639,26808688,26808687,26808688,50,+,CCACATTAGTTCTGCAGAAATGTTGGCAACTGAAACAAACGTCTTTCACG,Distal Intergenic,8,26780315,26780509,195,1,Gm45647-201,28324,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,62,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19161,cg09420504,-0.0000222,0.00000981,-2.260949012,0.024455426,loss,ns,0.000024,0.0000167,1.437523433,0.151577931,pos,ns,0.007545675,0.004881121,1.545889921,0.123151373,pos,ns,0.909560743,0.0000325,0.000167861,0.193584603,0.846627935,pos,ns,0.826661292,Gm27034,Gm27034_Promoter,14,98708241,98708290,98708241,98708242,50,+,CGAGGCCACAAAGGACTGTTCTTTGACCATGTAATCAATTTTCCACTCAA,Promoter (6-7kb),14,98714813,98715752,940,1,Gm27034-201,-6523,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,5,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27051,cg06646690,-0.0000104,0.00000303,-3.417699162,0.000715879,loss,ns,0.0000074,0.00000515,1.436819964,0.151777628,pos,ns,0.002441725,0.001509752,1.617302307,0.106830099,pos,ns,0.971306369,-0.0000862,0.0000519,-1.660482671,0.097828472,neg,ns,0.930012824,Rasal2,Rasal2_Exon,1,157243573,157243622,157243573,157243574,50,-,CGCCACATCACCGGGGGAAAGGAGACTCATTCTCCAGCCAGAAAACTTTT,"Exon (Rasal2-203/Rasal2, exon 1 of 6)",1,157135182,157412595,277414,2,Rasal2-201,168973,Rasal2-201;Rasal2-204;Rasal2-203;Rasal2-205,Rasal2;Rasal2;Rasal2;Rasal2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,10,226525,ENSMUSG00000070565,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27005,cg00774674,-0.00000526,0.00000152,-3.463024759,0.000609256,loss,ns,0.00000371,0.00000258,1.436752524,0.151796783,pos,ns,0.00134063,0.000756503,1.772139626,0.077353561,pos,ns,1.111519691,-0.0000321,0.000026,-1.233642249,0.218270752,neg,ns,0.967984834,Cpne1,Cpne1_fiveUTR,2,156098309,156098358,156098309,156098310,50,+,CGCCACAATTGGGAGACCTTGCAAACGGATGACCACAGCCATGCTGCGCT,5' UTR,2,156071842,156111935,40094,2,Cpne1-217,13577,Cpne1-217;Cpne1-209;Cpne1-202;Cpne1-203;Cpne1-201;Cpne1-210;Cpne1-206;Cpne1-212;Cpne1-208;Cpne1-205;Cpne1-213;Cpne1-216;Gm28036-201;Gm28036-202;Gm28036-203;Gm28036-204;Gm28036-205;Gm28036-208;Gm28036-207;Gm28036-206;Rbm12-201;Rbm12-202;Rbm12-204;Rbm12-203;Rbm12-205,Cpne1;Cpne1;Cpne1;Cpne1;Cpne1;Cpne1;Cpne1;Cpne1;Cpne1;Cpne1;Cpne1;Cpne1;Gm28036;Gm28036;Gm28036;Gm28036;Gm28036;Gm28036;Gm28036;Gm28036;Rbm12;Rbm12;Rbm12;Rbm12;Rbm12,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;-1381;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,TRUE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,9,266692,ENSMUSG00000074643,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3470,cg21456642,-0.0000101,0.00000317,-3.195774826,0.001538273,loss,ns,-0.00000774,0.00000538,-1.436719614,0.151806131,neg,ns,-0.003675095,0.001577503,-2.329692169,0.020464351,neg,ns,1.689002027,-0.00000969,0.0000543,-0.17853558,0.858419,neg,ns,0.874768082,Bcl11a,Bcl11a_Exon,11,24163382,24163431,24163430,24163431,50,+,AGAATACCAGGATCAGTATCGAGAGAGGCTTCCGGCCTGGCAGAAGGGCG,"Exon (Bcl11a-201/Bcl11a, exon 4 of 5)",11,24078056,24173194,95139,1,Bcl11a-201,85326,Bcl11a-201;Bcl11a-203;Bcl11a-202;Bcl11a-204;Bcl11a-206,Bcl11a;Bcl11a;Bcl11a;Bcl11a;Bcl11a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,51,98,14025,ENSMUSG00000000861,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14081,cg07338692,-0.0000245,0.0000226,-1.083271832,0.279529618,loss,ns,0.0000552,0.0000384,1.436543711,0.151856104,pos,ns,-0.001358022,0.011253825,-0.120672015,0.904029,neg,ns,0.043817638,0.000357117,0.000387018,0.922738578,0.356861066,pos,ns,0.271239757,Evx2,Evx2_Intergenic_downstream,2,74651855,74651904,74651855,74651856,50,+,CGAAAACCAGGGTGATACATCACCAGTCCAAATGTGCTGCTATAATCGTA,Downstream (1-2kb),2,74655616,74659419,3804,2,Evx2-202,7515,Evx2-201;Evx2-202,Evx2;Evx2,0;7515,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,17,35,14029,ENSMUSG00000001815,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
18255,cg12269412,0.0000242,0.00000633,3.825571413,0.000157774,gain,ns,0.0000155,0.0000108,1.436465229,0.151878404,pos,ns,0.001420313,0.003151187,0.450723123,0.652504199,pos,ns,0.185416689,0.0000544,0.000108369,0.50242058,0.615728408,pos,ns,0.090102366,Ap3b1,Ap3b1_Intergenic_downstream,13,94596642,94596691,94596642,94596643,50,+,CGCTGACACCTAATTGTTACTGGATTAATGTGCAAACAGGGACAGCGAAC,Distal Intergenic,13,94542303,94547867,5565,1,Ap3b1-202,54339,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,33,55,11774,ENSMUSG00000021686,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
19484,cg20983117,-0.00000923,0.00000802,-1.150600574,0.250783354,loss,ns,-0.0000196,0.0000136,-1.436318091,0.15192022,neg,ns,-0.008884029,0.003990905,-2.226068628,0.026728244,neg,ns,1.573029575,0.00000256,0.000137247,0.018661787,0.985122918,pos,ns,0.722716843,Pja1,Pja1_Exon,X,99406038,99406087,99406038,99406039,50,-,CGGCTCTTATCAAAGGCCCTTTCAAGAAACAGGCATGCCTGTGTGCCTTT,"Exon (Gm14812-201/Gm14812-201, exon 7 of 7)",20,99466146,99470672,4527,2,Pja1-204,64634,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,17,18744,ENSMUSG00000034403,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9857,cg00369852,-0.00000186,0.00000674,-0.275500343,0.783115408,loss,ns,0.0000164,0.0000114,1.436275499,0.151932325,pos,ns,-0.003746938,0.003352566,-1.11763307,0.264589136,neg,ns,0.577427991,0.000211321,0.000115294,1.832880286,0.067779301,pos,ns,0.087334208,Gm44402,Gm44402_Intergenic_downstream,6,51173371,51173420,51173419,51173420,50,+,ACAAGACACATTATCCTTTTAATTACAAGCTGTAGACAGGGCCAACTTCG,Distal Intergenic,6,50967268,50967505,238,1,Gm44402-201,206103,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,9,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
15195,cg05459845,0.0000337,0.00000547,6.167427282,2.16E-09,gain,yes,-0.0000133,0.00000929,-1.436243114,0.151941531,neg,ns,-0.000936234,0.002721206,-0.344050894,0.731041266,neg,ns,0.136058107,0.000079,0.0000936,0.844243616,0.399184315,pos,ns,0.095611352,Rhcg,Rhcg_Intergenic_downstream,7,79535462,79535511,79535462,79535463,50,+,CGCGAATTTGCATGAAAAATGTGTGAGAAAAGCCAGCTCCGGTGACCTCA,Distal Intergenic,7,79593369,79594929,1561,2,Rhcg-203,59418,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,9,56315,ENSMUSG00000030549,mapped to different genes,7,79535419,79535689,271,*,271,28,0.616236162,1.094949495,0.103321033,4.81E-22,CpGisland,TRUE,NA,NRS
560,cg25208067,0.0000426,0.00000924,4.608062018,0.00000595,gain,ns,0.0000226,0.0000157,1.436189766,0.151956696,pos,ns,0.006449406,0.004600675,1.401839142,0.161963746,pos,ns,0.790582188,-0.0000421,0.000158217,-0.26625046,0.790223324,neg,ns,0.146615499,Dlx6,Dlx6_Intergenic_downstream,6,6872024,6872073,6872024,6872025,50,+,CGATCAAATCAAACCCTGAAGGACAAAAGACTGTTTGATTCATATGGAAA,Distal Intergenic,6,6863798,6865430,1633,1,Dlx6-204,8226,Dlx6-203;Dlx6-202;Dlx6-201,Dlx6;Dlx6;Dlx6,0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,36,13396,ENSMUSG00000029754,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
14705,cg18906876,-0.000019,0.0000192,-0.99289643,0.321534794,loss,ns,0.0000468,0.0000326,1.435931968,0.152029994,pos,ns,0.015572292,0.009542122,1.631952753,0.103704807,pos,ns,0.984201112,-0.0000136,0.000328153,-0.041596106,0.966847455,neg,ns,0.679611655,2210408I21Rik,2210408I21Rik_Intron,13,77396913,77396962,77396961,77396962,50,+,TTAAAACACTGGTGGGATTCCTAATTGCATTCATCATTAGATATGACACG,"Intron (2210408I21Rik-201/2210408I21Rik, intron 19 of 19)",13,77135540,77613784,478245,1,2210408I21Rik-201,261373,2210408I21Rik-201,2210408I21Rik,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,19,20,72371,ENSMUSG00000071252,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3241,cg09349683,0.000048,0.00000986,4.870687117,0.00000178,gain,yes,0.0000241,0.0000168,1.435833657,0.152057954,pos,ns,0.012584172,0.004907982,2.56402153,0.010817825,pos,ns,1.965860037,-0.000372522,0.000168785,-2.207080651,0.028040917,neg,ns,0.494034643,Kcnma1,Kcnma1_threeUTR,14,23336065,23336114,23336113,23336114,50,+,CGTCCCACTGTTTTTTTCCTGATTGACTGATACCAAAGGCAACTTGCCCG,3' UTR,14,23289431,23803304,513874,2,Kcnma1-207,467190,Kcnma1-207;Kcnma1-210;Kcnma1-205;Kcnma1-201;Kcnma1-208;Kcnma1-209;Kcnma1-212;Kcnma1-204;Kcnma1-202;Kcnma1-211;Kcnma1-229;Kcnma1-234;Kcnma1-223;Kcnma1-214;Kcnma1-216;Kcnma1-219;Kcnma1-220;Kcnma1-224;Kcnma1-233;Kcnma1-236;Kcnma1-237;Kcnma1-213;Kcnma1-228;Kcnma1-203;Kcnma1-206;Kcnma1-221;Kcnma1-225;Kcnma1-226;Kcnma1-230;Kcnma1-235,Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,13,41,16531,ENSMUSG00000063142,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17751,cg24068112,0.00000015,0.00000106,0.141034097,0.887934607,gain,ns,0.00000259,0.0000018,1.435643421,0.152112068,pos,ns,0.00072223,0.00052816,1.367444425,0.17247665,pos,ns,0.763269691,-0.0000139,0.0000182,-0.764546179,0.445123407,neg,ns,0.978440273,Fto,Fto_Intron,8,91624413,91624462,91624413,91624414,50,+,CGGATGATTTTTTATTTCCGTTTAGCAGTGATGACAGAATGTCATAGTGA,"Intron (Fto-201/Fto, intron 8 of 8)",8,91313525,91668439,354915,1,Fto-201,310888,Fto-201;Fto-205,Fto;Fto,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,26,26383,ENSMUSG00000055932,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26418,cg21731123,0.00000464,0.00000366,1.267960854,0.20576341,gain,ns,-0.00000892,0.00000622,-1.434926189,0.152316222,neg,ns,0.000510512,0.001821775,0.280227556,0.779489832,pos,ns,0.108189546,-0.0000386,0.0000627,-0.615849521,0.53844574,neg,ns,0.938501988,Pan3,Pan3_Exon,5,147466996,147467045,147466996,147466997,50,-,CGAAAAGCAAAGAACCCTATTGGCTGCCTTGCTGACAGGTGTAAATCAGG,"Exon (Pan3-209/Pan3, exon 5 of 19)",5,147430161,147548502,118342,1,Pan3-201,36835,Pan3-201;Pan3-209;Pan3-205;Pan3-214;Pan3-210;Pan3-216;Pan3-218;Pan3-204;Pan3-208,Pan3;Pan3;Pan3;Pan3;Pan3;Pan3;Pan3;Pan3;Pan3,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,6,72587,ENSMUSG00000029647,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
329,cg23890805,-0.0000465,0.0000104,-4.479760059,0.0000105,loss,ns,-0.0000253,0.0000176,-1.434765637,0.152361951,neg,ns,-0.013835251,0.005168357,-2.676914899,0.007825803,neg,ns,2.106471094,0.000212562,0.000177739,1.195922217,0.232640861,pos,ns,0.858447424,Arid1b,Arid1b_Intron,17,5139075,5139124,5139123,5139124,50,-,GGAAGTCTGAAATTACATCTTTGTCTTTGAAGTCAGGCATACTGTTAGCG,"Intron (Arid1b-201/Arid1b, intron 4 of 18)",17,4994939,5343505,348567,1,Arid1b-201,144136,Arid1b-201;Arid1b-207;Arid1b-202;Arid1b-203,Arid1b;Arid1b;Arid1b;Arid1b,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,11,239985,ENSMUSG00000069729,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
571,cg00705684,-0.0000034,0.00000581,-0.586177096,0.558183061,loss,ns,0.0000142,0.00000986,1.434674471,0.152387921,pos,ns,-0.002000539,0.002889884,-0.692255884,0.489294843,neg,ns,0.310429361,0.0000781,0.0000994,0.785726772,0.432627709,pos,ns,0.860989956,Gm48238,Gm48238_Intergenic_downstream,13,6898204,6898253,6898252,6898253,50,-,ATTATACACTAACAGGTTCTTAGGGGAATTCAAATAAATCCTCACAACCG,Distal Intergenic,13,6673139,6673408,270,1,Gm48238-201,225114,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12884,cg24117059,-0.0000293,0.00000701,-4.17889629,0.0000381,loss,ns,-0.0000171,0.0000119,-1.434638483,0.152398174,neg,ns,-0.001700275,0.003486905,-0.487617038,0.626165786,neg,ns,0.203310666,0.000186669,0.000119914,1.55668552,0.120565454,pos,ns,0.713672203,Psd3,Psd3_fiveUTR,8,67818285,67818334,67818333,67818334,50,-,TTCAACTACCCTGTTTGCAGCGAGTCTGATTGTTCCAGGCACAGCTCACG,Promoter (<=1kb),8,67689089,67818295,129207,2,Psd3-206,0,Psd3-201;Psd3-205;Psd3-206;Psd3-204;Psd3-203;Psd3-213;Psd3-214;Psd3-202;Psd3-210;Psd3-207,Psd3;Psd3;Psd3;Psd3;Psd3;Psd3;Psd3;Psd3;Psd3;Psd3,0;0;0;0;0;0;0;-52;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,2,234353,ENSMUSG00000030465,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24885,cg24430580,0.0000456,0.0000053,8.597745252,4.09E-16,gain,yes,-0.0000129,0.00000901,-1.434510066,0.152434764,neg,ns,0.004634937,0.002639707,1.755852631,0.080101123,pos,ns,1.096361398,0.0000011,0.0000908,0.012083448,0.99036681,pos,ns,0.07922434,Pitx2,Pitx2_Exon,3,129213907,129213956,129213955,129213956,50,-,CACCAGGAAGCCCGCCTCTGGTTTTAAGATGTTAGGCCAACAGGGAAGCG,Promoter (<=1kb),3,129213932,129216774,2843,1,Pitx2-208,0,Pitx2-207;Pitx2-201;Pitx2-203;Pitx2-204;Pitx2-208;Pitx2-202;Pitx2-206,Pitx2;Pitx2;Pitx2;Pitx2;Pitx2;Pitx2;Pitx2,0;0;0;0;0;0;-319,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,24,18741,ENSMUSG00000028023,mapped to different genes,3,129213666,129214125,460,*,460,39,0.67173913,0.776152981,0.084782609,5.23E-27,CpGisland,TRUE,U3,Pr-B
4384,cg00751472,-0.0000144,0.00000536,-2.68416678,0.007661891,loss,ns,-0.0000131,0.00000911,-1.434509082,0.152435045,neg,ns,-0.001227788,0.002669113,-0.459998613,0.645839676,neg,ns,0.189875279,-0.000100668,0.0000918,-1.096713161,0.273618004,neg,ns,0.961135736,Tnik,Tnik_threeUTR,3,28667917,28667966,28667917,28667918,50,+,CGATCTGGAGGAAGTAGCCAAGTGTTTTTCATGACCCTCAACAGAAATTC,3' UTR,3,28263214,28670585,407372,1,Tnik-207,404703,Tnik-207;Tnik-201;Tnik-212;Tnik-203;Tnik-205;Tnik-202;Tnik-206;Tnik-211;Tnik-214;Tnik-215;Tnik-204;Tnik-216,Tnik;Tnik;Tnik;Tnik;Tnik;Tnik;Tnik;Tnik;Tnik;Tnik;Tnik;Tnik,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,8,15,665113,ENSMUSG00000027692,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26467,cg16540891,0.0000271,0.0000116,2.333915784,0.020238907,gain,ns,-0.0000283,0.0000197,-1.43450694,0.152435655,neg,ns,-0.003457937,0.005777723,-0.598494714,0.549946925,neg,ns,0.259679222,0.000135791,0.000198695,0.683413403,0.494856119,pos,ns,0.239112326,Gm572,Gm572_Intergenic_downstream,4,148677091,148677140,148677139,148677140,50,+,AATAAATAAATAATCAGGGTTGTCTTGGCTGATAAACGGTCCCCACCTCG,Distal Intergenic,4,148643317,148671572,28256,1,Gm572-201,33774,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,11,230909,ENSMUSG00000070577,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9399,cg21664672,0.0000271,0.00000766,3.539885678,0.000461676,gain,ns,-0.0000187,0.000013,-1.434370479,0.152474544,neg,ns,0.006762122,0.00381381,1.773062421,0.077200227,pos,ns,1.112381424,-0.000514592,0.000131157,-3.923494369,0.000107529,neg,ns,0.132149247,Nnmt,Nnmt_Intergenic_upstream,9,48649627,48649676,48649627,48649628,50,+,CGGCGATTAAATGTTGTTTTAAAGAGGGAGTGCTCACTGCCCTCCCATCT,Distal Intergenic,9,48591877,48605153,13277,2,Nnmt-202,-44474,Zbtb16-201,Zbtb16,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,18113,ENSMUSG00000032271,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12465,cg07499079,-0.0000332,0.00000856,-3.876151994,0.000129554,loss,ns,-0.0000209,0.0000145,-1.434368796,0.152475024,neg,ns,0.006684876,0.004261433,1.568692159,0.117739819,pos,ns,0.929076635,-0.000301931,0.00014655,-2.060255329,0.040208418,neg,ns,0.884357813,Onecut2,Onecut2_threeUTR,18,64396092,64396141,64396092,64396093,50,-,CGAGTGCCTTGCTTGAACCAAAGCAACGATTTAGCCAGTCTGGACCTCTC,3' UTR,18,64340020,64400987,60968,1,Onecut2-201,56072,Onecut2-201,Onecut2,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,19,225631,ENSMUSG00000045991,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23215,cg12090017,0.00000858,0.00000556,1.542717985,0.123919376,gain,ns,0.0000135,0.00000944,1.434281441,0.152499923,pos,ns,0.008887288,0.002766578,3.212376456,0.001454795,pos,ns,2.837198198,-0.0000323,0.0000951,-0.339131172,0.734740531,neg,ns,0.158903671,Rnf220,Rnf220_Intron,4,117492836,117492885,117492884,117492885,50,-,AAGACAGAAATCGAAAAGCAACCAAATAAATCATCAGCTACTTTTCCACG,"Intron (Rnf220-201/Rnf220, intron 1 of 14)",4,117271463,117497052,225590,2,Rnf220-201,4167,Rnf220-201;Rnf220-207;Rnf220-204,Rnf220;Rnf220;Rnf220,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
18177,cg27219604,0.0000554,0.0000107,5.171201128,0.000000418,gain,yes,-0.0000261,0.0000182,-1.434230882,0.152514336,neg,ns,0.011699277,0.005334444,2.193157771,0.029038578,pos,ns,1.537024649,-0.000395568,0.000183451,-2.156259224,0.031832341,neg,ns,0.527511105,Herpud1,Herpud1_threeUTR,8,94389356,94389405,94389356,94389357,50,+,CGTCCAGAGGACCAGAGGTTAATTTATTCTGGGAAGCTGTTGTTGGATCA,3' UTR,8,94386438,94395377,8940,1,Herpud1-205,2918,Herpud1-205;Herpud1-201;Herpud1-204;Herpud1-202;Herpud1-206;Herpud1-203,Herpud1;Herpud1;Herpud1;Herpud1;Herpud1;Herpud1,0;0;0;0;0;-4126,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,2,64209,ENSMUSG00000031770,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23122,cg17396898,0.0000032,0.0000022,1.455072383,0.146661062,gain,ns,0.00000536,0.00000374,1.4341225,0.152545234,pos,ns,0.000316813,0.001095399,0.289221614,0.772605117,pos,ns,0.11204242,0.0000865,0.0000377,2.295710379,0.022359681,pos,ns,0.964867614,Rnf220,Rnf220_Intron,4,117315030,117315079,117315030,117315031,50,-,CGGCTGGTTTTATTAATACGTCAAATACATTATCCGTGTAATACACTTGT,"Intron (Rnf220-201/Rnf220, intron 2 of 14)",4,117271463,117497052,225590,2,Rnf220-201,181973,Rnf220-201;Rnf220-202;Rnf220-207,Rnf220;Rnf220;Rnf220,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,4,117314991,117315152,162,*,162,10,0.5,0.995085995,0.061728395,0.0000055,CpGisland,TRUE,U13,Hc-P
14019,cg20431009,-0.00000574,0.00000143,-4.010800977,0.0000759,loss,ns,0.00000349,0.00000243,1.434074941,0.152558795,pos,ns,0.001654823,0.000712007,2.324165168,0.020762688,pos,ns,1.682716425,-0.0000433,0.0000245,-1.769702696,0.077759686,neg,ns,0.06386977,Arpc2,Arpc2_fiveUTR,1,74236810,74236859,74236858,74236859,50,-,GGGGGCAGCCGCCGCCATGATCCTGCTGGAGGTGAACAACCGCATCATCG,Promoter (<=1kb),1,74236084,74236888,805,1,Arpc2-204,726,Arpc2-204;Arpc2-203;Arpc2-201;Arpc2-202,Arpc2;Arpc2;Arpc2;Arpc2,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,6,6,76709,ENSMUSG00000006304,conserved gene but different region,1,74236248,74237193,946,*,946,100,0.695560254,0.886431784,0.105708245,2.03E-78,CpGisland,TRUE,U1,Pr-A
27402,cg13628982,0.00000706,0.00000549,1.285267739,0.199658122,gain,ns,-0.0000134,0.00000933,-1.433973398,0.15258775,neg,ns,0.000147266,0.002734166,0.053861578,0.957080142,pos,ns,0.019051695,-0.0000498,0.000094,-0.529331296,0.596954488,neg,ns,0.647719669,Arfgef2,Arfgef2_Exon,2,166827557,166827606,166827605,166827606,50,+,ACCACCAAAGGCAAACTTCATTGAAGCTGACAAGTATTTTCTTCCATTCG,"Exon (Arfgef2-201/Arfgef2, exon 3 of 39)",2,166805588,166898052,92465,1,Arfgef2-201,21969,Arfgef2-201;Arfgef2-202,Arfgef2;Arfgef2,0;-51,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,99371,ENSMUSG00000074582,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22784,cg06804258,0.0000741,0.00000546,13.56754163,3.10E-33,gain,yes,-0.0000133,0.00000928,-1.433965887,0.152589892,neg,ns,0.003947925,0.002719961,1.45146395,0.147661931,pos,ns,0.830731457,-0.000104502,0.0000935,-1.117195349,0.264775914,neg,ns,0.147787304,Dmbx1,Dmbx1_Promoter,4,115944247,115944296,115944295,115944296,50,+,CTAACAAAGCAATTTGCCACGAGCCATCTCCTGGACAGGTTATTAGCGCG,Promoter (4-5kb),4,115915120,115939926,24807,2,Dmbx1-202,-4321,Dmbx1-203;Dmbx1-202,Dmbx1;Dmbx1,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,9,42,140477,ENSMUSG00000028707,conserved gene but different region,4,115943986,115944303,318,*,318,35,0.694968554,0.925340871,0.110062893,1.76E-28,CpGisland,TRUE,U13,Hc-P
27122,cg16704050,-0.0000344,0.0000127,-2.716819352,0.006961512,loss,ns,0.0000308,0.0000215,1.433907868,0.152606439,pos,ns,-0.003874777,0.006297922,-0.615246825,0.53884311,neg,ns,0.268537666,-0.000275252,0.000216585,-1.270871468,0.204727219,neg,ns,0.816902425,Astn1,Astn1_threeUTR,1,158684181,158684230,158684181,158684182,50,-,CGGGTCCTCTACCACTATAACCAGCACTATGAGAGTTTTGGGGAATTCAC,3' UTR,1,158362273,158691779,329507,1,Astn1-205,321908,Astn1-205;Astn1-201;Astn1-211;Astn1-204;Astn1-210,Astn1;Astn1;Astn1;Astn1;Astn1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,3,11899,ENSMUSG00000026587,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8579,cg11452514,-0.00000181,0.00000316,-0.575189404,0.565580443,loss,ns,-0.00000769,0.00000536,-1.433796344,0.152638248,neg,ns,-0.004503397,0.001570327,-2.867808065,0.004416607,neg,ns,2.354911236,0.0000842,0.000054,1.559555231,0.119885295,pos,ns,0.95214034,Snrnp70,Snrnp70_Exon,7,45381861,45381910,45381909,45381910,50,+,GGGGGGGGCTCGGCAACTCCTGGGGGCCTGGCGAGGAGGCGGGCTTCCCG,"Exon (Snrnp70-216/Snrnp70, exon 8 of 10)",7,45376453,45395742,19290,2,Snrnp70-201,13832,Snrnp70-201;Snrnp70-207;Snrnp70-216;Snrnp70-215;Snrnp70-214;Snrnp70-204;Snrnp70-209;Snrnp70-213;Snrnp70-206;Snrnp70-205;Snrnp70-217;Snrnp70-203,Snrnp70;Snrnp70;Snrnp70;Snrnp70;Snrnp70;Snrnp70;Snrnp70;Snrnp70;Snrnp70;Snrnp70;Snrnp70;Snrnp70,0;0;0;0;0;0;-544;0;12889;5860;13262;13284,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,8,20637,ENSMUSG00000063511,conserved gene but different region,7,45381825,45381935,111,*,111,10,0.756756757,0.721247563,0.09009009,0.000000173,CpGisland,TRUE,U10,Tr-S
4798,cg23700291,0.0000724,0.0000218,3.327259191,0.000982593,gain,ns,-0.000053,0.000037,-1.433600782,0.15269404,neg,ns,-0.02734061,0.01082688,-2.525252844,0.012059885,neg,ns,1.918656819,0.000564326,0.000372336,1.515637122,0.130630112,pos,ns,0.394080009,Cstad,Cstad_Promoter,2,30594988,30595037,30595036,30595037,50,+,TGACAGCTGATTGGCTGCTCGGAGATGCATATAATTACCAGCAACTGGCG,Promoter (<=1kb),2,30595040,30608943,13904,1,Cstad-201,-3,Cstad-201,Cstad,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,7,78617,ENSMUSG00000047363,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24101,cg03590800,-0.0000089,0.00000583,-1.528363731,0.127441942,loss,ns,0.0000142,0.0000099,1.433563345,0.152704722,pos,ns,0.001702844,0.002899771,0.587234036,0.557473984,pos,ns,0.253775395,-0.0000339,0.0000997,-0.340162925,0.733964213,neg,ns,0.582950807,Fnbp1l,Fnbp1l_Exon,3,122542122,122542171,122542170,122542171,50,+,CACCTTTACTGTTTTTCTCTAGAGTTACATCTATGTATGACGTGGGAACG,"Exon (Fnbp1l-204/Fnbp1l, exon 11 of 12)",3,122538719,122563881,25163,2,Fnbp1l-204,21710,Fnbp1l-204;Fnbp1l-201;Fnbp1l-203;Fnbp1l-206,Fnbp1l;Fnbp1l;Fnbp1l;Fnbp1l,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,214459,ENSMUSG00000039735,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17169,cg24555743,0.00000275,0.00000129,2.130831273,0.033889768,gain,ns,-0.00000314,0.00000219,-1.433557101,0.152706504,neg,ns,0.00066346,0.000641989,1.033444094,0.302201656,pos,ns,0.51970316,-0.0000349,0.0000221,-1.580832411,0.114936094,neg,ns,0.030493281,Sall1,Sall1_Intergenic_downstream,8,89006825,89006874,89006873,89006874,50,-,TATTTATTTCAACAATAGCTTCAAATCTTTTTAAACATCATAAGAACACG,Distal Intergenic,8,89027235,89044162,16928,2,Sall1-201,37337,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,15,58198,ENSMUSG00000031665,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
15709,cg15954878,-0.0000144,0.0000105,-1.370227231,0.171607454,loss,ns,0.0000256,0.0000178,1.433364765,0.152761393,pos,ns,0.000628191,0.005228454,0.120148502,0.904443342,pos,ns,0.043618634,0.000440831,0.000179806,2.451702881,0.01476968,pos,ns,0.778847873,Dmd,Dmd_Exon,X,82948821,82948870,82948821,82948822,50,-,CGCAGGTCCTGGAATTTGAAATATCCGGGGGCCTCTACAGAATCCTGGCA,Promoter (<=1kb),20,82948870,83492739,543870,1,Dmd-205,0,Dmd-205;Dmd-203,Dmd;Dmd,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,20,28,13405,ENSMUSG00000045103,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11244,cg16746511,0.000160856,0.0000139,11.56017855,6.09E-26,gain,yes,0.0000339,0.0000236,1.433192086,0.152810686,pos,ns,0.018868127,0.006925474,2.724452627,0.006806353,pos,ns,2.167085561,0.000340887,0.000238166,1.43129905,0.153351869,pos,ns,0.366463925,Nr4a2,Nr4a2_Exon,2,57112340,57112389,57112388,57112389,50,-,AATCGGAGCTGTATTCTCCCGAAGAGTGGTAACTGTAGCTCTGAGAAGCG,"Exon (Nr4a2-201/Nr4a2, exon 3 of 8)",2,57106830,57115038,8209,2,Nr4a2-201,2649,Nr4a2-201;Nr4a2-203;Nr4a2-206;Nr4a2-202;Nr4a2-205;Nr4a2-204,Nr4a2;Nr4a2;Nr4a2;Nr4a2;Nr4a2;Nr4a2,0;0;0;0;0;1984,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,25,18227,ENSMUSG00000026826,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
7754,cg02718192,-0.00000149,0.0000104,-0.143154005,0.886261559,loss,ns,-0.0000253,0.0000177,-1.43314574,0.152823918,neg,ns,-0.006203375,0.005173822,-1.198992874,0.23144641,neg,ns,0.635549552,0.000251582,0.000177927,1.41395987,0.158377151,pos,ns,0.753011611,Arhgap15,Arhgap15_Intron,2,44146719,44146768,44146719,44146720,50,+,CGTTTGTTTGACAGGATCCAGTTATAGGTTCCGATGTCTGTTTAAAGAAA,"Intron (Arhgap15-203/Arhgap15, intron 10 of 14)",2,43748824,44395953,647130,1,Arhgap15-203,397895,Arhgap15-203;Arhgap15-202;Arhgap15-201;Arhgap15-204,Arhgap15;Arhgap15;Arhgap15;Arhgap15,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,72,78,76117,ENSMUSG00000049744,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26766,cg15633471,0.0000108,0.00000922,1.173236535,0.241601628,gain,ns,-0.0000224,0.0000157,-1.433083511,0.152841686,neg,ns,-0.007599047,0.004588773,-1.656008534,0.09873193,neg,ns,1.005542374,0.000155809,0.000157808,0.987337059,0.324247417,pos,ns,0.450036046,Iqsec2,Iqsec2_Exon,X,152204148,152204197,152204196,152204197,50,+,TTCGAGGGCAAGCCTGCCTCGCTGGACGAGGGTGCCATGGCTGGTGCCCG,"Exon (Iqsec2-207/Iqsec2, exon 4 of 15)",20,152144268,152225235,80968,1,Iqsec2-207,59880,Iqsec2-207;Iqsec2-202;Iqsec2-203;Iqsec2-206;Iqsec2-201,Iqsec2;Iqsec2;Iqsec2;Iqsec2;Iqsec2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,16,245666,ENSMUSG00000041115,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4093,cg22048395,-0.00000356,0.00000647,-0.550106633,0.582642371,loss,ns,0.0000158,0.000011,1.43292925,0.152885739,pos,ns,-0.000664356,0.00322099,-0.206258376,0.836724486,neg,ns,0.077417521,-0.0000125,0.00011077,-0.112473008,0.910521165,neg,ns,0.647148216,Gm45647,Gm45647_Intergenic_upstream,8,26763202,26763251,26763250,26763251,50,-,ACGAAGGTGCTGTAAATTATACAAATATGATGCTAACAAGCCAGGAAACG,Distal Intergenic,8,26780315,26780509,195,1,Gm45647-201,-17113,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,46,62,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6540,cg07278867,-0.00000394,0.00000655,-0.602064691,0.547571166,loss,ns,-0.0000159,0.0000111,-1.432865042,0.152904077,neg,ns,0.001096942,0.00326016,0.3364686,0.736745175,pos,ns,0.1326827,-0.0000968,0.000112117,-0.863108512,0.38874506,neg,ns,0.860418001,Zfp536,Zfp536_Intron,7,37650957,37651006,37650957,37650958,50,-,CGTGTAAATCGATCACTTAATAGCATTTAGAAAATACTGCAGTGGGGAAC,"Intron (Zfp536-202/Zfp536, intron 3 of 6)",7,37479104,37769624,290521,2,Zfp536-202,118618,Zfp536-202;Zfp536-201;Zfp536-203;Zfp536-206;Zfp536-209;Zfp536-208,Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,73,112,243937,ENSMUSG00000043456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12666,cg21385302,-0.00000159,0.00000419,-0.379458298,0.704607366,loss,ns,0.0000102,0.00000711,1.432689006,0.152954364,pos,ns,0.002413831,0.002083813,1.15837176,0.247603961,pos,ns,0.606242412,-0.000062,0.0000717,-0.864961356,0.387728837,neg,ns,0.934116171,4930447F04Rik,4930447F04Rik_Intergenic_upstream,X,66469623,66469672,66469623,66469624,50,+,CGGACATTTTCTTGACCATCTATTGAAGTCACCAAGGCCTGGGCTGTGCA,Distal Intergenic,20,66303361,66304224,864,2,4930447F04Rik-201,-165399,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,74862,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24366,cg13068441,-0.000011,0.00000792,-1.386112286,0.166708813,loss,ns,0.0000193,0.0000135,1.432422743,0.15303045,pos,ns,0.011130331,0.003942041,2.823494833,0.005057727,pos,ns,2.296044577,-0.000381633,0.000135566,-2.815099182,0.005188324,neg,ns,0.213823014,Zfp384,Zfp384_Exon,6,125025860,125025909,125025908,125025909,50,-,CTGCGGCACAGGAAATGGACAGAGCCTTGGGCTCATGGATTCAGTTCCCG,"Exon (Zfp384-214/Zfp384, exon 7 of 12)",6,125009145,125036180,27036,1,Zfp384-210,16715,Zfp384-210;Zfp384-202;Zfp384-214;Zfp384-208;Zfp384-213;Zfp384-207;Zfp384-201;Zfp384-209;Zfp384-216;Zfp384-204;Zfp384-206;Zfp384-212;Zfp384-203;Zfp384-205;Zfp384-215;Zfp384-211,Zfp384;Zfp384;Zfp384;Zfp384;Zfp384;Zfp384;Zfp384;Zfp384;Zfp384;Zfp384;Zfp384;Zfp384;Zfp384;Zfp384;Zfp384;Zfp384,0;0;0;0;0;0;0;16147;16145;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,6,269800,ENSMUSG00000038346,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5636,cg25375152,0.0000514,0.0000159,3.2424686,0.001314086,gain,ns,0.0000386,0.0000269,1.432410896,0.153033836,pos,ns,0.024569152,0.007890952,3.113585229,0.00202077,pos,ns,2.694483052,-0.000486239,0.000271369,-1.791798424,0.074140461,neg,ns,0.283502098,Hdac9,Hdac9_Intron,12,34441027,34441076,34441075,34441076,50,+,TTATTCAGCAGCAATCCACATTCCATTTGTCTAGACTAAATATAGCAGCG,"Intron (Hdac9-205/Hdac9, intron 1 of 24)",12,34047580,34528328,480749,2,Hdac9-205,87252,Hdac9-205;Hdac9-204;Hdac9-206;Hdac9-210;Hdac9-207;Hdac9-212;Hdac9-201;Hdac9-211;Hdac9-208;Hdac9-203;Hdac9-202;Hdac9-209,Hdac9;Hdac9;Hdac9;Hdac9;Hdac9;Hdac9;Hdac9;Hdac9;Hdac9;Hdac9;Hdac9;Hdac9,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,19,31,79221,ENSMUSG00000004698,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5308,cg25605414,0.00000203,0.00000126,1.605404651,0.109422953,gain,ns,-0.00000308,0.00000215,-1.432350191,0.153051187,neg,ns,-0.00094069,0.000629416,-1.494543577,0.136050797,neg,ns,0.86629891,0.00000748,0.0000216,0.345482422,0.729966039,pos,ns,0.972841402,Purg,Purg_Exon,8,33387233,33387282,33387233,33387234,50,-,CGTAATACTATTACTGTTCCATTCAAAGCTTGGACAAGGTTTGGGGAGAA,Promoter (<=1kb),8,33386325,33387388,1064,1,Purg-201,908,Purg-201;Purg-202;Wrn-202;Wrn-201;Wrn-203,Purg;Purg;Wrn;Wrn;Wrn,0;0;-1706;-1761;-1725,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,75029,ENSMUSG00000049184,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12964,cg07224797,-0.0000471,0.0000393,-1.197235709,0.232129391,loss,ns,0.0000957,0.0000668,1.432336898,0.153054987,pos,ns,-0.023633098,0.019572708,-1.207451636,0.228178698,neg,ns,0.641724902,0.001192548,0.000673104,1.771714599,0.077424268,pos,ns,0.280596253,Rora,Rora_Intron,9,68813325,68813374,68813373,68813374,50,+,ATGTAATTGGTTTCAGATGACACTTTGCTAGTCAATCTGTGAAACAGCCG,"Intron (Rora-201/Rora, intron 1 of 10)",9,68653786,69388246,734461,1,Rora-201,159539,Rora-201;Rora-206,Rora;Rora,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,19,19883,ENSMUSG00000032238,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
8224,cg27131306,0.0000677,0.00000984,6.878665725,3.34E-11,gain,yes,0.000024,0.0000167,1.432316309,0.153060872,pos,ns,0.012606803,0.004899245,2.57321308,0.01054065,pos,ns,1.977132595,-0.0000434,0.000168485,-0.257693205,0.796814668,neg,ns,0.262323536,Gm5246,Gm5246_Intergenic_downstream,19,44882656,44882705,44882704,44882705,50,+,GAAAAGCTCATTTTGCTGGTAATTTACTCTCCTGCTTTTGGGCTGCTCCG,Distal Intergenic,19,44851009,44851979,971,1,Gm5246-201,31647,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,20,383450,NA,mapped to different genes,19,44882499,44882726,228,*,228,27,0.671052632,1.080758427,0.118421053,5.25E-23,CpGisland,TRUE,U3,Pr-B
15133,cg18980984,0.00000058,0.00000225,0.258202941,0.796421624,gain,ns,0.00000547,0.00000382,1.432276122,0.15307236,pos,ns,0.003100605,0.001118234,2.772770798,0.00589457,pos,ns,2.229547867,-0.000138289,0.0000385,-3.596026023,0.000375844,neg,ns,0.930134192,Gm48470,Gm48470_Intergenic_downstream,13,79346083,79346132,79346083,79346084,50,-,CGATACAACTGGAATTGTCTAAGGTCAACAGTGCCGTAATTACTTTAAAA,Distal Intergenic,13,79441143,79441407,265,2,Gm48470-201,95324,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,20,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12248,cg25600562,0.00000197,0.00000172,1.148569835,0.25161888,gain,ns,0.00000418,0.00000292,1.432256372,0.153078006,pos,ns,0.002096471,0.000854157,2.454432054,0.014660215,pos,ns,1.83385966,-0.0000628,0.0000294,-2.136992483,0.033381039,neg,ns,0.041851682,Ptch1,Ptch1_Intron,13,63566177,63566226,63566177,63566178,50,+,CGGCCGCAGCAGCTCCTTGATTCAATAGATGAGATGGAAGAAGAAAAAAA,"Intron (Ptch1-204/Ptch1, intron 1 of 23)",13,63508329,63573460,65132,2,Ptch1-204,7234,Ptch1-201;Ptch1-204;Ptch1-206;Ptch1-202;Ptch1-207;Ptch1-203;Ptch1-205,Ptch1;Ptch1;Ptch1;Ptch1;Ptch1;Ptch1;Ptch1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,36,19206,ENSMUSG00000021466,conserved gene and region,13,63565382,63566182,801,*,801,117,0.755305868,1.02591133,0.146067416,1.25E-110,CpGisland,TRUE,U1,Pr-A
15526,cg24349919,-0.00000586,0.00000231,-2.532966115,0.011803097,loss,ns,0.00000562,0.00000393,1.432213828,0.153090169,pos,ns,0.000851965,0.001150504,0.740514762,0.459548202,pos,ns,0.337668929,-0.0000216,0.0000396,-0.546959885,0.584799795,neg,ns,0.038835815,Ep300,Ep300_fiveUTR,15,81585368,81585417,81585368,81585369,50,+,CGGCAGAGGGAAGAAACAACAGCCGCCATCTTGTTTGTGTGCTAGGCTGG,Promoter (<=1kb),15,81585397,81652077,66681,1,Ep300-201,0,Ep300-202;Ep300-201;Ep300-205,Ep300;Ep300;Ep300,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,7,328572,ENSMUSG00000055024,mapped to different genes,15,81585328,81585392,65,*,65,8,0.646153846,1.181818182,0.123076923,0.000000426,CpGisland,TRUE,NA,NRS
8836,cg04718017,-0.0000462,0.00000622,-7.43693439,1.02E-12,loss,yes,-0.0000151,0.0000106,-1.43203461,0.153141413,neg,ns,-0.004680819,0.003094864,-1.512447248,0.131438879,neg,ns,0.881276153,0.0000454,0.000106432,0.42630807,0.670179244,pos,ns,0.925356083,Gm6580,Gm6580_Promoter,14,46019832,46019881,46019832,46019833,50,-,CGGCTCACATTCCGCATTTTGTTTCTAGCATGAAAGACTTTGTTTTAAAT,Promoter (7-8kb),14,46027428,46028784,1357,1,Gm6580-201,-7596,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,3,625377,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26455,cg00331096,0.0000194,0.00000309,6.284425232,1.11E-09,gain,yes,-0.00000752,0.00000525,-1.432028028,0.153143295,neg,ns,0.002851528,0.001537838,1.854245104,0.064653698,pos,ns,1.189406631,-0.0000689,0.0000529,-1.303261503,0.193452619,neg,ns,0.05771031,Foxa2,Foxa2_fiveUTR,2,148045896,148045945,148045944,148045945,50,-,ACTGGAAGCCGAGTGCATGGCAGTTTAAAATTTAACAGCCACAACAAACG,Promoter (<=1kb),2,148042877,148045948,3072,2,Foxa2-202,3,Foxa2-202;Foxa2-201;Foxa2-204;Foxa2-203,Foxa2;Foxa2;Foxa2;Foxa2,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,25,15376,ENSMUSG00000037025,conserved gene and region,2,148045829,148045945,117,*,117,9,0.564102564,0.975,0.076923077,0.00000341,CpGisland,TRUE,NA,NRS
25635,cg27043849,0.00014858,0.0000117,12.68629744,5.46E-30,gain,yes,-0.0000285,0.0000199,-1.432008934,0.153148755,neg,ns,0.015094182,0.005829107,2.589450375,0.010066483,pos,ns,1.997122217,-0.000446085,0.000200462,-2.225278487,0.026781785,neg,ns,0.663555968,Pcolce,Pcolce_Exon,5,137608617,137608666,137608617,137608618,50,-,CGTCCCAGTAACCCCAGGCCGCCCATTCCACCCGCGGGTCGGTGACCCAT,"Exon (Pcolce-202/Pcolce, exon 4 of 10)",5,137605103,137611408,6306,2,Pcolce-204,2742,Fbxo24-201;Fbxo24-202;Fbxo24-203;Pcolce-204;Pcolce-201;Pcolce-209;Pcolce-212;Pcolce-202;Pcolce-205;Pcolce-206;Pcolce-208;Pcolce-211;Pcolce-203;Pcolce-210;Pcolce-207,Fbxo24;Fbxo24;Fbxo24;Pcolce;Pcolce;Pcolce;Pcolce;Pcolce;Pcolce;Pcolce;Pcolce;Pcolce;Pcolce;Pcolce;Pcolce,16412;20336;20290;0;0;-2819;0;0;-425;0;0;0;0;0;2660,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,18542,ENSMUSG00000029718,conserved gene and region,5,137608586,137608755,170,*,170,12,0.694117647,0.61132754,0.070588235,0.000000101,CpGisland,TRUE,NA,NRS
14793,cg04604143,-0.00000486,0.00000214,-2.267473561,0.024049499,loss,ns,0.00000521,0.00000364,1.431945572,0.153166876,pos,ns,0.001504508,0.001066304,1.410955653,0.159260434,pos,ns,0.797892105,-0.0000206,0.0000367,-0.561646717,0.574762557,neg,ns,0.045890443,Nufip2,Nufip2_fiveUTR,11,77686146,77686195,77686194,77686195,50,+,CTGAGTGAGCCCTGAGAAGCAGTCTCAGATCCTGACGGTGCAGCAGCCCG,Promoter (<=1kb),11,77686155,77712741,26587,1,Nufip2-201,0,Nufip2-201;Nufip2-204;Nufip2-202;Nufip2-203,Nufip2;Nufip2;Nufip2;Nufip2,0;0;-1264;-1406,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,10,68564,ENSMUSG00000037857,conserved gene and region,11,77685817,77686243,427,*,427,32,0.597189696,0.870096791,0.074941452,1.51E-20,CpGisland,TRUE,U1,Pr-A
12987,cg11154866,-0.00000939,0.00000392,-2.394883217,0.017219045,loss,ns,0.00000954,0.00000666,1.431857327,0.153192116,pos,ns,-0.002598461,0.001951218,-1.331712455,0.18393303,neg,ns,0.735340275,0.0000985,0.0000671,1.468118091,0.143086049,pos,ns,0.913609588,Stc1,Stc1_Exon,14,69031546,69031595,69031546,69031547,50,+,CGGGGCTTTTGCATGCCTGGAAAACTCCACCTGTGACACAGATGGGATGT,"Exon (Stc1-201/Stc1, exon 2 of 4)",14,69029238,69041804,12567,1,Stc1-201,2308,Stc1-201,Stc1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,9,20855,ENSMUSG00000014813,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
25002,cg01403539,-0.0000761,0.0000135,-5.617942138,0.000000043,loss,yes,0.0000329,0.000023,1.431801271,0.153208151,pos,ns,-0.009937686,0.006740881,-1.474241471,0.141431357,neg,ns,0.849454291,0.000237515,0.000231818,1.024572479,0.306363788,pos,ns,0.536474762,Fgfr2,Fgfr2_Intron,7,131497011,131497060,131497011,131497012,50,-,CGTGTGTGAAACTAGTCGATTTCCTTAATTCATCCCTGGAGAATGGATAA,"Intron (Fgfr2-217/Fgfr2, intron 2 of 6)",7,130162451,133123350,2960900,2,Fgfr2-217,1626290,Fgfr2-217;Gm45105-201,Fgfr2;Gm45105,0;-3108,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,58,79,14183,ENSMUSG00000030849,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1000,cg08228781,0.000011,0.00000855,1.29218341,0.19725605,gain,ns,0.0000208,0.0000145,1.431609781,0.153262936,pos,ns,-0.003120746,0.004254751,-0.733473221,0.46382417,neg,ns,0.333646624,0.000115378,0.000146321,0.788529245,0.430989784,pos,ns,0.698368019,Syt7,Syt7_threeUTR,19,10443436,10443485,10443436,10443437,50,-,CGTGAACATCATCAAAGCCCGGAACCTCAAAGCCATGGACATCGGGGGCA,3' UTR,19,10389090,10448444,59355,1,Syt7-201,54346,Syt7-201;Syt7-208;Syt7-203;Syt7-202;Syt7-210;Syt7-204;Syt7-205;Syt7-207;Syt7-209;Syt7-213;Syt7-214;Syt7-215,Syt7;Syt7;Syt7;Syt7;Syt7;Syt7;Syt7;Syt7;Syt7;Syt7;Syt7;Syt7,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,9,10,54525,ENSMUSG00000024743,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10628,cg04384377,-0.0000122,0.00000371,-3.29050429,0.001115375,loss,ns,-0.00000901,0.0000063,-1.431441897,0.153310981,neg,ns,-0.001492698,0.001844873,-0.809105888,0.419074792,neg,ns,0.377708462,0.0000198,0.0000634,0.312731252,0.754695124,pos,ns,0.883325052,Gm29776,Gm29776_Exon,14,54696487,54696536,54696487,54696488,50,+,CGAGGGGCCTGTCTTCTGAGTCCAGCTGGCAGCAGGCAGCATAGGCTATG,"Exon (Gm29776-201/Gm29776, exon 5 of 14)",14,54692598,54698833,6236,2,Gm29776-201,2297,Gm29776-201;Gm29776-202,Gm29776;Gm29776,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,101056084,ENSMUSG00000114865,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23876,cg05320825,-0.0000132,0.00000852,-1.554516098,0.121081648,loss,ns,-0.0000207,0.0000145,-1.431109004,0.15340628,neg,ns,-0.011800986,0.004238636,-2.784146727,0.005696672,neg,ns,2.244378822,0.00038017,0.000145766,2.608079845,0.009546044,pos,ns,0.656950964,Cdan1,Cdan1_Exon,2,120739901,120739950,120739949,120739950,50,+,TTGCTTCTCCCCAGATGTGGGGACGAACTCCTCTGGTCATGGTGGGGCCG,"Exon (Ttbk2-202/Ttbk2, exon 15 of 15)",2,120718186,120850128,131943,2,Cdan1-207,110178,Cdan1-207;Ttbk2-202;Ttbk2-203;Ttbk2-201,Cdan1;Ttbk2;Ttbk2;Ttbk2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,3,68968,ENSMUSG00000027284,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12330,cg10042751,-0.0000229,0.0000072,-3.175372914,0.001646927,loss,ns,0.0000175,0.0000122,1.431098262,0.153409356,pos,ns,0.001051297,0.003582507,0.293452912,0.769372343,pos,ns,0.11386343,-0.0000363,0.000123202,-0.294697804,0.768421991,neg,ns,0.864389162,Fign,Fign_Intergenic_downstream,2,63963477,63963526,63963525,63963526,50,-,TGGATTGCAGTCTGGCGGTGTTCACACTTCTGCCGTGTCCATCAGAAGCG,Distal Intergenic,2,63980447,64097988,117542,2,Fign-202,134511,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,28,84,60344,ENSMUSG00000075324,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10179,cg03529432,0.000150153,0.0000155,9.714358818,1.20E-19,gain,yes,-0.0000376,0.0000263,-1.431067728,0.1534181,neg,ns,0.022337566,0.007693023,2.903613428,0.003953641,pos,ns,2.40300279,-0.000228507,0.000264562,-0.86371706,0.388411112,neg,ns,0.221858698,Hoxa6,Hoxa6_fiveUTR,6,52208710,52208759,52208758,52208759,50,+,CTGGATGGCCGAACGCCAAAAGCGACAGCAGCAAATCGCACCAGCTGACG,Promoter (<=1kb),6,52206288,52208722,2435,2,Hoxa6-201,0,Gm28308-201;Hoxa3-201;Hoxa3-203;Hoxa5-201;Hoxa6-201,Gm28308;Hoxa3;Hoxa3;Hoxa5;Hoxa6,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,4,15403,ENSMUSG00000043219,mapped to different genes,6,52208695,52208947,253,*,253,29,0.691699605,0.989347357,0.114624506,3.13E-24,CpGisland,TRUE,U3,Pr-B
24598,cg24202924,0.0000256,0.00000813,3.14375328,0.001829419,gain,ns,0.0000198,0.0000138,1.431012131,0.153434021,pos,ns,-0.000273022,0.004045035,-0.067495532,0.94623073,neg,ns,0.024002952,0.00019084,0.000139108,1.371879504,0.171092936,pos,ns,0.901672689,Agap2,Agap2_Exon,10,127090147,127090196,127090147,127090148,50,+,CGCAAAATGTGGAAACTAAAATCCTTTGGTAGTTTAAGAAATATTTATAA,"Exon (Agap2-203/Agap2, exon 14 of 19)",10,127075284,127093169,17886,1,Agap2-203,14863,Agap2-203;Agap2-201;Agap2-202,Agap2;Agap2;Agap2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,216439,ENSMUSG00000025422,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17497,cg07099052,0.0000181,0.00000525,3.446012982,0.000647402,gain,ns,0.0000128,0.00000892,1.43072003,0.153517692,pos,ns,0.011461756,0.002613564,4.385489829,0.0000159,pos,ns,4.799319267,-0.0002714,0.0000899,-3.019577448,0.002741657,neg,ns,0.926269205,Chtop,Chtop_fiveUTR,3,90506223,90506272,90506271,90506272,50,-,ACTGGCGTCGGCTGTTTGTTCTTCAGCATATTAGTAAAGCTTCAAGGTCG,5' UTR,3,90498956,90509450,10495,2,Chtop-205,3178,Chtop-205;Chtop-201;Chtop-206;Chtop-203;Chtop-202;Chtop-207;Chtop-204;Chtop-209;Chtop-208;S100a1-201;S100a1-202,Chtop;Chtop;Chtop;Chtop;Chtop;Chtop;Chtop;Chtop;Chtop;S100a1;S100a1,0;0;0;0;0;0;0;0;0;8120;8006,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,10,66511,ENSMUSG00000001017,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12093,cg04499492,-0.00000716,0.0000049,-1.462231257,0.144690855,loss,ns,0.0000119,0.00000832,1.430629753,0.153543558,pos,ns,0.00168473,0.002436804,0.691368545,0.489851384,pos,ns,0.30993566,-0.000041,0.0000838,-0.489791486,0.624627879,neg,ns,0.891330225,Gm11481,Gm11481_Intergenic_upstream,4,62824966,62825015,62825014,62825015,50,-,AATATTTCATACATTTCAAAAATGTCATCTGTGAAAACACAGAAATACCG,Distal Intergenic,4,62939521,62939775,255,1,Gm11481-201,-114555,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,5,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7283,cg17232476,-0.0000113,0.00000915,-1.231629012,0.21902116,loss,ns,0.0000222,0.0000155,1.430496536,0.153581734,pos,ns,-0.009958501,0.004554484,-2.186526746,0.029524428,neg,ns,1.529818503,0.000427788,0.000156628,2.731231485,0.006671186,pos,ns,0.9245735,Sorl1,Sorl1_Exon,9,42022386,42022435,42022434,42022435,50,-,CACCAAATGCTGTTGATACAGTTCCCGTTGCTGCAGCGATACTGGTTGCG,"Exon (Sorl1-201/Sorl1, exon 23 of 48)",9,41964720,42124297,159578,2,Sorl1-201,101862,Sorl1-201,Sorl1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,6,20660,ENSMUSG00000049313,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6932,cg03050711,-0.00000294,0.0000019,-1.552036959,0.121673661,loss,ns,0.00000461,0.00000322,1.430450447,0.153594943,pos,ns,0.000727396,0.000943263,0.771149012,0.44120598,pos,ns,0.35535861,0.0000417,0.0000324,1.285653845,0.19952345,pos,ns,0.053595378,Rev3l,Rev3l_fiveUTR,10,39732109,39732158,39732157,39732158,50,+,TGCGTCCGTGACATCATCATCATGGCAACAAGAGCTGCAGCCTGGGACCG,Promoter (<=1kb),10,39732118,39875211,143094,1,Rev3l-201,0,Rev3l-201;Rev3l-204;Rev3l-207,Rev3l;Rev3l;Rev3l,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,7,19714,ENSMUSG00000019841,conserved gene and region,10,39732157,39733134,978,*,978,126,0.715746421,1.007554945,0.128834356,6.64E-111,CpGisland,TRUE,U1,Pr-A
20580,cg14581879,0.000000905,0.00000139,0.650385419,0.515925007,gain,ns,0.00000338,0.00000236,1.430374313,0.153616765,pos,ns,0.001464205,0.00069241,2.114649014,0.035257761,pos,ns,1.452745273,-0.0000386,0.0000238,-1.619330343,0.10639305,neg,ns,0.966218158,Srek1,Srek1_fiveUTR,13,103764309,103764358,103764357,103764358,50,-,TTAATGTTCATGAACCAAACGATATCAAGCATGGACGCTTTCCCAGGACG,Promoter (<=1kb),13,103739348,103764582,25235,2,Srek1-204,224,Srek1-204;Srek1-201;Srek1-210;Srek1-205;Srek1-209;Srek1-206;Srek1-202;Srek1-208,Srek1;Srek1;Srek1;Srek1;Srek1;Srek1;Srek1;Srek1,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,7,10,218543,ENSMUSG00000032621,mapped to different genes,13,103764328,103764416,89,*,89,9,0.516853933,1.525714286,0.101123596,0.000000335,CpGisland,TRUE,U11,Tr-P
7110,cg07289244,0.0000176,0.000006,2.929881058,0.003642645,gain,ns,-0.0000146,0.0000102,-1.429927618,0.153744849,neg,ns,-0.003074841,0.002986041,-1.029738495,0.303935524,neg,ns,0.517218537,-0.0000612,0.00010269,-0.596031229,0.551589302,neg,ns,0.802425977,Lrp1b,Lrp1b_Intron,2,41024570,41024619,41024618,41024619,50,+,CACATCATTACACTGCCAAACACCATCTATCACTTTTACTGAACTTAACG,"Intron (Lrp1b-201/Lrp1b, intron 41 of 90)",2,40595248,42653624,2058377,2,Lrp1b-201,1629005,Lrp1b-201;Lrp1b-208,Lrp1b;Lrp1b,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,7,94217,ENSMUSG00000049252,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21373,cg17334093,-0.00000543,0.00000532,-1.019901379,0.308570511,loss,ns,0.0000129,0.00000904,1.429786948,0.153785201,pos,ns,0.006823084,0.002648387,2.576316405,0.010448512,pos,ns,1.980945561,-0.000244964,0.0000911,-2.689606628,0.007540973,neg,ns,0.51421102,Cacna2d2,Cacna2d2_Intron,9,107519070,107519119,107519118,107519119,50,+,CATTGAATAAAATATTGTTTGTGCCCCTCCCCTTTCCCTCCCCCTTTTCG,"Intron (Cacna2d2-201/Cacna2d2, intron 22 of 37)",9,107399612,107529343,129732,1,Cacna2d2-201,119458,Cacna2d2-201;Cacna2d2-205;Cacna2d2-202;Cacna2d2-203;Cacna2d2-204;Cacna2d2-208;Cacna2d2-210,Cacna2d2;Cacna2d2;Cacna2d2;Cacna2d2;Cacna2d2;Cacna2d2;Cacna2d2,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,18,56808,ENSMUSG00000010066,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6250,cg00187832,-0.0000116,0.00000228,-5.083853181,0.000000641,loss,yes,0.00000554,0.00000387,1.429767592,0.153790754,pos,ns,0.002787961,0.001135184,2.45595593,0.014599407,pos,ns,1.835664791,-0.0000554,0.000039,-1.419898167,0.15664218,neg,ns,0.92705332,Pabpc1,Pabpc1_Exon,15,36605888,36605937,36605936,36605937,50,+,TGGCTTGCCCTTTATAACATCAAAATTCATGGTGTCCAAAGCACGCTCCG,"Exon (Pabpc1-201/Pabpc1, exon 2 of 15)",15,36595661,36608973,13313,2,Pabpc1-201,3036,Pabpc1-201;Pabpc1-207;Pabpc1-210;Pabpc1-203;Pabpc1-208,Pabpc1;Pabpc1;Pabpc1;Pabpc1;Pabpc1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,4,18458,ENSMUSG00000022283,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
3921,cg13910072,-0.000000149,0.00000374,-0.039814662,0.968266516,loss,ns,-0.00000908,0.00000635,-1.429582742,0.153843793,neg,ns,-0.00693942,0.001861769,-3.727326162,0.000229973,neg,ns,3.638322276,0.00016411,0.000064,2.563177756,0.010843593,pos,ns,0.852738978,5730522E02Rik,5730522E02Rik_Intron,11,25771097,25771146,25771097,25771098,50,+,CGGTTGGTGGCCAGATTGTGGTTCTGGACTCAGAGGCTTCCATTTGGAAG,"Intron (5730522E02Rik-202/5730522E02Rik, intron 2 of 5)",11,25617668,26210569,592902,2,5730522E02Rik-202,439423,5730522E02Rik-202;5730522E02Rik-201;5730522E02Rik-208,5730522E02Rik;5730522E02Rik;5730522E02Rik,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,90,70626,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9682,cg01794235,-0.0000074,0.00000572,-1.292865234,0.197020383,loss,ns,0.0000139,0.00000972,1.429535938,0.153857225,pos,ns,0.012127451,0.002848724,4.257152428,0.0000275,pos,ns,4.561092452,-0.000520692,0.000098,-5.314956578,0.000000204,neg,yes,0.855072729,Gm7481,Gm7481_Intergenic_upstream,12,49948140,49948189,49948188,49948189,50,-,TAATGGCTCTTTCACGAATCCCCATCAGTTTGGCATTGTGGAGAAAATCG,Distal Intergenic,12,49840757,49841751,995,2,Gm7481-201,-106438,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,27,37,665077,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25185,cg08273474,0.000098,0.0000137,7.13762978,6.77E-12,gain,yes,-0.0000333,0.0000233,-1.429261397,0.15393603,neg,ns,0.012502591,0.006830932,1.830290562,0.068166518,pos,ns,1.166428887,-0.0000191,0.000234915,-0.081325951,0.935235217,neg,ns,0.046451123,Bmp2,Bmp2_fiveUTR,2,133554421,133554470,133554421,133554422,50,+,CGACCATGGTGGCCGGGACCCGCTGTCTTCTAGCGTTGCTGCTTCCCCAG,5' UTR,2,133552159,133562885,10727,1,Bmp2-201,2262,Bmp2-201,Bmp2,0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,4,12156,ENSMUSG00000027358,conserved gene and region,2,133554293,133554442,150,*,150,16,0.706666667,0.900562852,0.106666667,5.51E-13,CpGisland,TRUE,U3,Pr-B
23437,cg09727511,0.00000666,0.00000174,3.838243506,0.000150203,gain,ns,-0.00000421,0.00000295,-1.429226366,0.153946088,neg,ns,0.001294521,0.000863867,1.498518757,0.135016112,pos,ns,0.869614401,-0.000035,0.0000297,-1.1781367,0.239645702,neg,ns,0.027691502,Dpyd,Dpyd_Exon,3,118433848,118433897,118433896,118433897,50,+,TCTGACTCTCTTCGGTGACGGGTATTCTTGGGTGGATAATACGGATTACG,"Exon (Gm26871-202/Gm26871-202, exon 3 of 3)",3,118562129,119432924,870796,1,Dpyd-201,-128232,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,29,99586,ENSMUSG00000033308,mapped to different genes,3,118433691,118434190,500,*,500,37,0.624,0.795801609,0.074,1.85E-23,CpGisland,TRUE,U3,Pr-B
14706,cg16526871,-0.00000859,0.0000049,-1.754791915,0.080282791,loss,ns,0.0000119,0.00000832,1.429211457,0.153950368,pos,ns,0.000440364,0.002437029,0.180697159,0.856723363,pos,ns,0.06715939,-0.0000274,0.0000838,-0.326639043,0.744161332,neg,ns,0.872094236,2210408I21Rik,2210408I21Rik_Intron,13,77397258,77397307,77397258,77397259,50,-,CGCCGGCCTTTTGGGGGAGGAATTTAGCACACTGTCAAAAACATTATCAG,"Intron (2210408I21Rik-201/2210408I21Rik, intron 19 of 19)",13,77135540,77613784,478245,1,2210408I21Rik-201,261718,2210408I21Rik-201,2210408I21Rik,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,19,20,72371,ENSMUSG00000071252,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27616,cg21323387,-0.0000085,0.0000124,-0.684407975,0.494228917,loss,ns,0.0000302,0.0000211,1.42913342,0.153972776,pos,ns,0.013528875,0.00618308,2.188047945,0.029412355,pos,ns,1.531470207,-0.000335734,0.000212636,-1.57891603,0.115375131,neg,ns,0.426007109,Kcnj9,Kcnj9_Exon,1,172326056,172326105,172326056,172326057,50,-,CGCTTGTTGGGCTGCGAGATCTTGACGAACATGCAGCCCACCATGAAGGC,"Exon (Kcnj9-201/Kcnj9, exon 3 of 4)",1,172320501,172329318,8818,2,Kcnj9-201,3213,Kcnj9-201;Kcnj9-202;Kcnj9-203,Kcnj9;Kcnj9;Kcnj9,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,6,16524,ENSMUSG00000038026,conserved gene and region,1,172325701,172326106,406,*,406,49,0.642857143,1.182758621,0.120689655,7.23E-42,CpGisland,TRUE,U3,Pr-B
13187,cg21140773,-0.00000174,0.00000212,-0.822820927,0.411242315,loss,ns,0.00000515,0.0000036,1.429104964,0.153980947,pos,ns,0.002775131,0.001055433,2.629376289,0.008980735,pos,ns,2.046688122,-0.0000923,0.0000363,-2.544248119,0.011436274,neg,ns,0.956092772,Tcf4,Tcf4_Exon,18,69678102,69678151,69678150,69678151,50,-,TCAAATCAATTACTAGGTCAAGATCTAGGTAACAGTATATAATACTGTCG,"Exon (Tcf4-201/Tcf4, exon 18 of 21)",18,69344146,69684343,340198,1,Tcf4-201,333956,Tcf4-201;Tcf4-207;Tcf4-240;Tcf4-254;Tcf4-246;Tcf4-206;Tcf4-202;Tcf4-257;Tcf4-248;Tcf4-205;Tcf4-253;Tcf4-238;Tcf4-249;Tcf4-250;Tcf4-226;Tcf4-230;Tcf4-234;Tcf4-258;Tcf4-252;Tcf4-243;Tcf4-204;Tcf4-222;Tcf4-255;Tcf4-203;Tcf4-251;Tcf4-214;Tcf4-211,Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;-4229,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,66,21413,ENSMUSG00000053477,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4558,cg20625795,0.00000907,0.00000379,2.39414319,0.017253179,gain,ns,-0.0000092,0.00000644,-1.428968119,0.154020248,neg,ns,-0.003108926,0.001886021,-1.648404599,0.100282728,neg,ns,0.99877386,0.0000958,0.0000649,1.477249334,0.140623987,pos,ns,0.924981304,Smo,Smo_Exon,6,29754767,29754816,29754815,29754816,50,+,TTTGTGGGCAGCATTGGCTGGCTGGCCCAGTTCATGGATGGTGCCCGCCG,"Exon (Smo-201/Smo, exon 4 of 12)",6,29735694,29761365,25672,1,Smo-201,19073,Gm13717-201;Smo-201,Gm13717;Smo,4006;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,319757,ENSMUSG00000001761,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10242,cg26512254,0.000110299,0.00000467,23.64037998,2.37E-71,gain,yes,-0.0000113,0.00000793,-1.428917558,0.15403477,neg,ns,0.004963303,0.002322163,2.137362001,0.033350738,pos,ns,1.476894549,0.000196923,0.0000799,2.46588925,0.014208477,pos,ns,0.113151548,Hoxa13,Hoxa13_fiveUTR,6,52260793,52260842,52260841,52260842,50,-,AAGACCCCAGTGGCGCTGTTTTAAAAAGCCCCCAAGAAGTGAAGAGCGCG,Promoter (<=1kb),6,52257694,52260803,3110,2,Hoxa13-203,0,Hoxa13-203;Hoxa13-201;Hoxa13-202;Hoxa13-204;Hoxa13-205;Hoxa13-206,Hoxa13;Hoxa13;Hoxa13;Hoxa13;Hoxa13;Hoxa13,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,12,15398,ENSMUSG00000038203,mapped to different genes,6,52259987,52261198,1212,*,1212,176,0.764026403,1.001121681,0.145214522,1.45E-165,CpGisland,TRUE,U3,Pr-B
5931,cg13965097,-0.0000871,0.0000125,-6.963778233,1.99E-11,loss,yes,-0.0000303,0.0000212,-1.428843153,0.154056143,neg,ns,0.010705594,0.006221658,1.72069794,0.086303475,pos,ns,1.063971715,-0.000908446,0.000213962,-4.245822427,0.0000288,neg,ns,0.434416522,Fam180a,Fam180a_Promoter,6,35326271,35326320,35326319,35326320,50,-,GAATTTTTCTTTAACAAACAGACCCGCGGAACTTGTTAGAGAGCCCGGCG,Promoter (<=1kb),6,35312668,35326141,13474,2,Fam180a-201,-179,Fam180a-201,Fam180a,-130,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,1,208164,ENSMUSG00000047420,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21611,cg06661007,0.000000756,0.00000479,0.157832069,0.874691885,gain,ns,0.0000116,0.00000814,1.428783102,0.154073395,pos,ns,-0.000377692,0.002384623,-0.15838664,0.874255267,neg,ns,0.058361743,0.000119715,0.000082,1.459816372,0.14535317,pos,ns,0.886971583,Zfhx3,Zfhx3_Intron,8,108537965,108538014,108538013,108538014,50,-,CACGCTACTTTGCAATTTGCATAAATACAGGGTTATTTTTTATCGTGTCG,"Intron (Zfhx3-204/Zfhx3, intron 4 of 15)",8,107942644,108961630,1018987,1,Zfhx3-204,595321,Zfhx3-204,Zfhx3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,114,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2417,cg24582932,-0.0000205,0.00000903,-2.271323696,0.023812726,loss,ns,0.0000219,0.0000153,1.428773935,0.154076029,pos,ns,-0.000126888,0.004495057,-0.028228322,0.977498212,neg,ns,0.009884028,-0.0000713,0.000154585,-0.460917058,0.645181306,neg,ns,0.778959712,Rorb,Rorb_Intergenic_upstream,19,19344261,19344310,19344309,19344310,50,-,CAGTTGTTTGTTTTCACACTTTATGGGAATGAATCACACCATGTCGACCG,Distal Intergenic,19,18930605,19111196,180592,2,Rorb-203,-233114,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,10,225998,ENSMUSG00000036192,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11680,cg01452506,-0.00000193,0.00000174,-1.109724888,0.267977683,loss,ns,0.00000422,0.00000295,1.428728522,0.154089076,pos,ns,0.002025991,0.000864993,2.342205019,0.019802776,pos,ns,1.703273932,-0.0000237,0.0000297,-0.798083648,0.425432885,neg,ns,0.060227946,Dnajb12,Dnajb12_fiveUTR,10,59879671,59879720,59879719,59879720,50,+,TTCCGCCATGGAATCCAACAAGGATGAAGCTGAGCGCTGTATCAGCATCG,Promoter (<=1kb),10,59879556,59899302,19747,1,Dnajb12-205,115,Dnajb12-205;Dnajb12-202;Dnajb12-204;Dnajb12-203;Dnajb12-201,Dnajb12;Dnajb12;Dnajb12;Dnajb12;Dnajb12,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,3,56709,ENSMUSG00000020109,conserved gene but different region,10,59879230,59880022,793,*,793,81,0.640605296,0.995752399,0.102143758,2.49E-62,CpGisland,TRUE,U1,Pr-A
15871,cg15823859,0.0000271,0.00000532,5.0994313,0.000000594,gain,yes,0.0000129,0.00000903,1.428521244,0.15414864,pos,ns,0.003023174,0.002646741,1.142225089,0.254241921,pos,ns,0.594752838,0.0000625,0.000091,0.686919685,0.492646871,pos,ns,0.108802772,Gm6411,Gm6411_Exon,13,83738124,83738173,83738172,83738173,50,-,GGCAGTGAAAGCCCCTCCAATGATGGCCCTTTTCTCCTTCTTTCAGACCG,"Exon (C130071C03Rik-201/C130071C03Rik-201, exon 4 of 4)",13,83761132,83762335,1204,2,Gm6411-201,24211,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,36,623241,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
27190,cg11105807,0.0000843,0.0000127,6.650368642,1.32E-10,gain,yes,-0.0000307,0.0000215,-1.428488756,0.154157977,neg,ns,0.009014678,0.006306368,1.429456259,0.153880093,pos,ns,0.81281756,-0.000428173,0.000216875,-1.974279564,0.049237341,neg,ns,0.0727882,Mafb,Mafb_Exon,2,160365931,160365980,160365931,160365932,50,+,CGGTTCTTCAGGGTCCGCCGCTTCTGCTTCAGGCGGATCACCTCGTCCTT,"Exon (Mafb-201/Mafb, exon 1 of 1)",2,160363703,160367065,3363,2,Mafb-201,1085,Mafb-201,Mafb,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,14,22,16658,ENSMUSG00000074622,conserved gene and region,2,160365864,160367635,1772,*,1772,185,0.687358917,0.886994873,0.104401806,2.50E-143,CpGisland,TRUE,U3,Pr-B
22118,cg12958319,0.000038,0.0000119,3.197647398,0.00152864,gain,ns,-0.0000289,0.0000202,-1.428465565,0.154164643,neg,ns,0.014759663,0.005918455,2.49383713,0.013157915,pos,ns,1.88081293,-0.000396789,0.000203535,-1.949484365,0.052139089,neg,ns,0.322397127,Eif4g2,Eif4g2_Exon,7,111080228,111080277,111080228,111080229,50,-,CGGAGTTGTTTGCTGCGGAGTTGTCATCTCGTCTAGTGCTTCGTGCAGGA,"Exon (Eif4g2-213/Eif4g2, exon 4 of 22)",7,111067750,111083030,15281,2,Eif4g2-213,2753,Eif4g2-213;Eif4g2-206;Eif4g2-204;Eif4g2-211;Eif4g2-210;Eif4g2-209;Eif4g2-203;Eif4g2-201;Eif4g2-212;Eif4g2-205,Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2,0;0;-4843;-4019;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,20,22,13690,ENSMUSG00000005610,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U4,Pr-F
8715,cg00890651,-0.00000999,0.00000662,-1.510906513,0.131830914,loss,ns,-0.0000161,0.0000112,-1.428458573,0.154166653,neg,ns,-0.004094581,0.003292374,-1.243656145,0.21456578,neg,ns,0.668439541,-0.0000896,0.000113224,-0.791326633,0.429358442,neg,ns,0.871908847,Gm48517,Gm48517_Intergenic_upstream,12,45594458,45594507,45594458,45594459,50,-,CGATTGGGTCTGGAAGTTGATGATTAATGATAATTACAATAATTACACCA,Distal Intergenic,12,45572431,45573287,857,2,Gm48517-201,-21220,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,3,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9347,cg25699407,0.0000353,0.0000049,7.194870279,4.73E-12,gain,yes,-0.0000119,0.00000833,-1.42838467,0.154187896,neg,ns,0.011509168,0.002439967,4.71693559,0.00000363,pos,ns,5.440530912,-0.0000537,0.0000839,-0.640400366,0.522385408,neg,ns,0.121508306,Id4,Id4_threeUTR,13,48262909,48262958,48262957,48262958,50,+,CGAGAAGGTTCACACACCCCCTCTATTCATTCCTCTTCCACAGGTGTGCG,3' UTR,13,48261228,48266026,4799,1,Id4-201,1681,Id4-201,Id4,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,9,15904,ENSMUSG00000021379,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
6309,cg17238473,-0.00000553,0.00000254,-2.181802517,0.02987484,loss,ns,-0.00000615,0.00000431,-1.427800477,0.154355897,neg,ns,0.000614387,0.001262621,0.486596518,0.626888126,pos,ns,0.202809956,0.0000352,0.0000434,0.811417732,0.417748383,pos,ns,0.943639401,Tmem131,Tmem131_Exon,1,36796261,36796310,36796261,36796262,50,-,CGTTGTTTTAAGAAAATGTCTGCGTTGAGGGTTTGCAGAGAAAGTTTATA,"Exon (Tmem131-201/Tmem131, exon 36 of 41)",1,36792191,36939527,147337,2,Tmem131-201,143217,Tmem131-201;Tmem131-208;Tmem131-207,Tmem131;Tmem131;Tmem131,0;0;20276,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,56030,ENSMUSG00000026116,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9105,cg02247898,-0.0000167,0.00000937,-1.781570333,0.075798223,loss,ns,0.0000227,0.0000159,1.427784669,0.154360445,pos,ns,-0.006390027,0.004664766,-1.369849402,0.171725274,neg,ns,0.765165783,0.000117202,0.000160421,0.730592434,0.465579922,pos,ns,0.128539375,Samd4,Samd4_Exon,14,46883764,46883813,46883812,46883813,50,+,GCGCCTGGCGGTGGAGATGCTGGCTGTTGCTGTAGATGGAGCTGCAGCCG,Promoter (<=1kb),14,46882854,47103150,220297,1,Samd4-201,910,Samd4-201;Samd4-211;Samd4-202;Samd4-208;Samd4-206,Samd4;Samd4;Samd4;Samd4;Samd4,0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,16,74480,ENSMUSG00000021838,conserved gene but different region,14,46883390,46883829,440,*,440,43,0.675,0.871487794,0.097727273,1.75E-32,CpGisland,TRUE,U3,Pr-B
1926,cg11803053,-0.0000224,0.00000813,-2.759276649,0.006137378,loss,ns,-0.0000197,0.0000138,-1.427542427,0.154430151,neg,ns,-0.009875896,0.004048055,-2.439664455,0.015261217,neg,ns,1.816410834,0.000132057,0.000139212,0.948598099,0.343563952,pos,ns,0.827250291,Gm48493,Gm48493_Intergenic_downstream,13,16382950,16382999,16382998,16382999,50,-,CAACAGCAAGAATCCCACCCAGGTCTTACTAAAAACGACTTTGGCTGACG,Distal Intergenic,13,16385919,16389759,3841,2,Gm48493-201,6809,Gm48493-201,Gm48493,6760,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14753,cg18018509,-0.000000891,0.00000141,-0.634105671,0.526479484,loss,ns,-0.00000341,0.00000239,-1.427405055,0.154469691,neg,ns,-0.000692163,0.000699339,-0.989738439,0.323073863,neg,ns,0.490698175,0.0000182,0.0000241,0.756282191,0.450054354,pos,ns,0.965593402,Abhd15,Abhd15_Exon,11,77538216,77538265,77538264,77538265,50,-,CCTAGTCTCATGCTTTCAGAGTCAAAAGCTTCAATCTCTCTGGCTTGACG,"Exon (Abhd15-202/Abhd15, exon 2 of 2)",11,77515984,77538607,22624,1,Abhd15-202,22232,Abhd15-202;Abhd15-203;Gm12734-201;Taok1-201;Taok1-202,Abhd15;Abhd15;Gm12734;Taok1;Taok1,0;0;-3868;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,6,67477,ENSMUSG00000000686,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16326,cg16748382,0.0000143,0.00000369,3.860512726,0.000137724,gain,ns,-0.00000896,0.00000627,-1.42738086,0.154476655,neg,ns,-0.004085137,0.001838353,-2.222171466,0.026993226,neg,ns,1.568745201,0.000108041,0.0000632,1.70894763,0.088461501,pos,ns,0.902100077,Exoc6b,Exoc6b_Exon,6,84746912,84746961,84746912,84746913,50,-,CGATGAAGGCCAACTGCAGCGTGTCCTCCTGGAACCCAGGCACCGGGCCG,"Exon (Exoc6b-203/Exoc6b, exon 20 of 22)",6,84618487,85069513,451027,2,Exoc6b-203,322552,Exoc6b-203,Exoc6b,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,8,75914,ENSMUSG00000033769,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25764,cg15591276,0.0000635,0.0000137,4.632629376,0.00000532,gain,ns,0.0000333,0.0000233,1.427361821,0.154482136,pos,ns,0.009143676,0.006824897,1.339753049,0.181306918,pos,ns,0.741585624,0.000145978,0.000234708,0.621956465,0.534427644,pos,ns,0.275667361,Uncx,Uncx_Promoter,5,139536923,139536972,139536971,139536972,50,-,TTTCATTATATCAATCACATTTAATTGGCAATTTGTACGAGCAATGACCG,Promoter (6-7kb),5,139543494,139548179,4686,1,Uncx-201,-6571,NA,NA,NA,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,22,88,22255,ENSMUSG00000029546,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
5653,cg22731136,-0.0000204,0.00000666,-3.064043579,0.002375443,loss,ns,-0.0000162,0.0000113,-1.427339258,0.154488632,neg,ns,0.004372912,0.003316802,1.318412339,0.188338902,pos,ns,0.725059966,-0.0000593,0.000114065,-0.520199375,0.603295913,neg,ns,0.721275827,Sox2,Sox2_Intron,3,34503969,34504018,34504017,34504018,50,+,TAATATTTATTCGTCCAGTGACTGTTAATCAAACCAAGTTTACAGTCCCG,"Intron (Sox2ot-204/Sox2ot-204, intron 2 of 3)",3,34650405,34652461,2057,1,Sox2-201,-146387,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,34,62,20674,ENSMUSG00000074637,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27346,cg09714739,0.00000831,0.0000104,0.797605919,0.425709733,gain,ns,-0.0000253,0.0000177,-1.427131232,0.154548529,neg,ns,-0.008061567,0.005188153,-1.553841418,0.121242536,neg,ns,0.916344989,0.000016,0.00017842,0.089552299,0.928700821,pos,ns,0.504081471,Cdh22,Cdh22_Intron,2,165158204,165158253,165158252,165158253,50,-,GGCTCTAATTTGACATCATGTTCAATTTGACGAAAGCAGGGCTTGGGACG,"Intron (Cdh22-201/Cdh22, intron 3 of 11)",2,165111507,165234853,123347,2,Cdh22-201,76600,Cdh22-201;Cdh22-202,Cdh22;Cdh22,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,23,104010,ENSMUSG00000053166,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21188,cg19150801,-0.00000667,0.00000318,-2.097154734,0.036789673,loss,ns,-0.00000771,0.00000541,-1.427012697,0.154582666,neg,ns,-0.002007526,0.001583819,-1.267522354,0.20591985,neg,ns,0.686301787,-0.00000683,0.0000545,-0.12543308,0.900262006,neg,ns,0.93517612,Rad54l2,Rad54l2_Exon,9,106693062,106693111,106693110,106693111,50,-,ACGGGGCCTGCTGGCACCAGAGGGTCAGTAGTCACTGGAAACACCAGGCG,"Exon (Rad54l2-201/Rad54l2, exon 22 of 22)",9,106688082,106789194,101113,2,Rad54l2-201,96083,Rad54l2-201;Rad54l2-202,Rad54l2;Rad54l2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,5,81000,ENSMUSG00000040661,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2746,cg00726571,0.0000484,0.00000799,6.051378575,4.14E-09,gain,yes,0.0000194,0.0000136,1.426677183,0.154679324,pos,ns,0.01320419,0.003977122,3.32003619,0.001007466,pos,ns,2.996769694,-0.000206535,0.000136773,-1.510055738,0.132047781,neg,ns,0.16878419,Klhl14,Klhl14_Promoter,18,21654853,21654902,21654853,21654854,50,+,CGAGCGTAAATGACTGCGATTTCAAACATCTTTGGAAGAAAGAAGGGGAA,Promoter (<=1kb),18,21550379,21654718,104340,2,Klhl14-202,-135,Klhl14-201;Klhl14-202,Klhl14;Klhl14,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,3,38,225266,ENSMUSG00000042514,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
15386,cg08495577,-0.00001,0.00000198,-5.073547891,0.000000674,loss,yes,0.00000479,0.00000336,1.426666168,0.154682498,pos,ns,0.000335712,0.000984168,0.341112159,0.733250227,pos,ns,0.134747794,-0.0000371,0.0000338,-1.094943771,0.274391251,neg,ns,0.964027269,Gria2,Gria2_threeUTR,3,80689135,80689184,80689135,80689136,50,-,CGTTGTAACCTTCCTTATAAGTTGCAAAATTCTGTGAATTCTGCGAGGAA,3' UTR,3,80681450,80802835,121386,2,Gria2-201,113651,Gria2-201;Gria2-202;Gria2-203;Gria2-206,Gria2;Gria2;Gria2;Gria2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,12,19,14800,ENSMUSG00000033981,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13345,cg02397231,0.0000959,0.0000153,6.247763313,1.37E-09,gain,yes,-0.0000372,0.0000261,-1.426631529,0.15469248,neg,ns,0.021862485,0.007637486,2.862523595,0.00448897,pos,ns,2.347853338,-0.000620842,0.000262653,-2.36373991,0.018708053,neg,ns,0.330477646,Nr2f2,Nr2f2_Intron,7,70253362,70253411,70253410,70253411,50,-,CCTTGATCAATAAGAGTTTGACTGCATTTTGAGTTCATTTTCCCCTGCCG,"Intron (Gm29683-202/Gm29683-202, intron 1 of 3)",7,70353074,70355237,2164,2,Nr2f2-203,101875,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,69,11819,ENSMUSG00000030551,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
14420,cg24310367,0.0000229,0.00000494,4.630522096,0.00000537,gain,ns,-0.000012,0.00000839,-1.42657147,0.154709788,neg,ns,-0.001161223,0.002457985,-0.472428665,0.636953256,neg,ns,0.195892438,-0.0000287,0.0000845,-0.339657781,0.734344263,neg,ns,0.689058705,Slc4a3,Slc4a3_fiveUTR,1,75549581,75549630,75549581,75549582,50,-,CGTCATGGAAAGTTGCCAGGGCCTGAGGACAGGGACAGGAACAATCCGAT,Promoter (<=1kb),1,75549599,75551382,1784,1,Slc4a3-211,0,Slc4a3-202;Slc4a3-203;Slc4a3-210;Slc4a3-201;Slc4a3-209;Slc4a3-206;Slc4a3-205;Slc4a3-212;Slc4a3-211;Slc4a3-207;Slc4a3-208;Slc4a3-204,Slc4a3;Slc4a3;Slc4a3;Slc4a3;Slc4a3;Slc4a3;Slc4a3;Slc4a3;Slc4a3;Slc4a3;Slc4a3;Slc4a3,0;3285;3119;0;3054;3048;0;2925;0;-138;-965;-2079,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,2,20536,ENSMUSG00000006576,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8700,cg17058166,0.000054,0.00000721,7.488031836,7.32E-13,gain,yes,-0.0000175,0.0000122,-1.426349682,0.154773718,neg,ns,0.008858166,0.003586178,2.470085062,0.014046157,pos,ns,1.852442484,-0.000349092,0.000123328,-2.830592834,0.004949654,neg,ns,0.048900006,Gm31907,Gm31907_fiveUTR,18,45559493,45559542,45559493,45559494,50,+,CGCTTGGTCTCCCTGCAGCTTTAACAGCCCTGACATGGAAACCCCATTGC,Promoter (<=1kb),18,45501590,45560130,58541,2,Gm31907-202,588,Gm31907-202;Kcnn2-205;Kcnn2-201;Kcnn2-207;Kcnn2-206;Kcnn2-202;Kcnn2-208;Kcnn2-203,Gm31907;Kcnn2;Kcnn2;Kcnn2;Kcnn2;Kcnn2;Kcnn2;Kcnn2,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,15,15,102634286,NA,mapped to different genes,18,45559377,45559494,118,*,118,12,0.677966102,0.932192232,0.101694915,1.49E-09,CpGisland,TRUE,U3,Pr-B
9929,cg27501041,0.000000719,0.00000613,0.117338341,0.906667928,gain,ns,-0.0000149,0.0000104,-1.426337341,0.154777276,neg,ns,-0.005774921,0.003051744,-1.892334922,0.059377952,neg,ns,1.226374789,0.0000415,0.000104949,0.395407854,0.692813872,pos,ns,0.750458965,Nabp1,Nabp1_Intergenic_upstream,1,51608014,51608063,51608062,51608063,50,-,CTAAAACTGCCACATATTGTAAACCTCACCAAGGAAGTGAATCCATCACG,Distal Intergenic,1,51471129,51478425,7297,2,Nabp1-206,-129638,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,2,109019,ENSMUSG00000026107,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21894,cg06949081,-0.00000307,0.0000022,-1.396139011,0.163671598,loss,ns,-0.00000533,0.00000374,-1.426276865,0.154794711,neg,ns,-0.001741162,0.001094333,-1.591071247,0.112612746,neg,ns,0.948412451,0.0000149,0.0000376,0.396498812,0.692009878,pos,ns,0.053732822,Cdkn2c,Cdkn2c_fiveUTR,4,109665278,109665327,109665326,109665327,50,-,GCTTGGTAGTAAATACTAGTAAGATCTGCCTGCCAAAAGCCCGCCCCTCG,Promoter (<=1kb),4,109660876,109665372,4497,2,Cdkn2c-201,45,Cdkn2c-201;Cdkn2c-202,Cdkn2c;Cdkn2c,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,8,13,12580,ENSMUSG00000028551,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
8416,cg03209410,0.0000457,0.00000959,4.768304141,0.00000286,gain,ns,-0.0000232,0.0000163,-1.426218949,0.15481141,neg,ns,0.009459359,0.004772116,1.982214563,0.048337972,pos,ns,1.315711572,-0.00044548,0.000164113,-2.714476938,0.007009762,neg,ns,0.187441418,Zeb2,Zeb2_Intron,2,45103450,45103499,45103498,45103499,50,+,TTGATGTGAGCGAAAGTGAAATCATACCTAAGGCATTCAAAAGACCGCCG,"Intron (Zeb2-212/Zeb2, intron 3 of 10)",2,44983632,45117395,133764,2,Zeb2-212,13896,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219;Zeb2-211;Zeb2-210;Zeb2-205;Zeb2-223;Zeb2-217;Zeb2-225;Zeb2-204,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;6577;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14755,cg03460354,-0.00000416,0.00000172,-2.423403079,0.015948135,loss,ns,-0.00000416,0.00000291,-1.425834788,0.154922212,neg,ns,0.000231205,0.000853966,0.270742515,0.78676925,pos,ns,0.104152622,-0.0000317,0.0000294,-1.077830821,0.28194725,neg,ns,0.958068004,Prmt9,Prmt9_Exon,8,77555719,77555768,77555719,77555720,50,-,CGGATACAAGACTTACTTGGTTGCTATGAGCAGGCCTTGGAACTGTTTCC,"Exon (Prmt9-201/Prmt9, exon 2 of 12)",8,77549397,77581338,31942,1,Prmt9-201,6322,Prmt9-201;Prmt9-203;Prmt9-202;Prmt9-205,Prmt9;Prmt9;Prmt9;Prmt9,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,102182,ENSMUSG00000037134,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14281,cg21086539,0.000113315,0.0000171,6.613772412,1.64E-10,gain,yes,-0.0000415,0.0000291,-1.425738503,0.154949992,neg,ns,0.018199851,0.008527395,2.134280371,0.033604163,pos,ns,1.47360692,-0.001013153,0.000293256,-3.454835154,0.00062735,neg,ns,0.161019556,Smg6,Smg6_Intron,11,75047324,75047373,75047372,75047373,50,-,GACCAGGGTTACATAATGGGAAACATAGCTGGGGCTCTGGAGAGCCCGCG,"Intron (Smg6-201/Smg6, intron 12 of 18)",11,74925823,75164448,238626,1,Smg6-201,121501,Smg6-201;Smg6-202;Smg6-204,Smg6;Smg6;Smg6,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,34,103677,ENSMUSG00000038290,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
21536,cg19820367,-0.00000228,0.00000276,-0.824690844,0.410181236,loss,ns,0.00000668,0.00000469,1.42570697,0.154959091,pos,ns,0.003142042,0.001373549,2.287534758,0.02283794,pos,ns,1.64134307,-0.000113975,0.0000472,-2.412866677,0.016407671,neg,ns,0.946454179,Tmed5,Tmed5_threeUTR,5,108124629,108124678,108124677,108124678,50,-,ACCATAGACCAGAAATTGACTCTATCAAAGTTGCTTTCTTGTATGTTTCG,3' UTR,5,108106366,108132565,26200,2,Tmed5-204,7887,Tmed5-204;Tmed5-202;Tmed5-201;Tmed5-205;Tmed5-203,Tmed5;Tmed5;Tmed5;Tmed5;Tmed5,0;0;0;0;7855,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,1,73130,ENSMUSG00000063406,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22230,cg25205720,0.0000333,0.0000248,1.342152765,0.180528599,gain,ns,0.0000602,0.0000422,1.425648803,0.154975876,pos,ns,0.000928156,0.012366753,0.075052524,0.940221331,pos,ns,0.0267699,0.000578356,0.000425292,1.359905158,0.174848125,pos,ns,0.392097915,Cryba4,Cryba4_Intergenic_downstream,5,112098771,112098820,112098819,112098820,50,-,TGAGGCCTGCAAGTCAGCCAGGAAATAGCTATTATTCCATCGCACTGTCG,Distal Intergenic,5,112246494,112251162,4669,2,Cryba4-202,152391,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,8,12959,ENSMUSG00000066975,mapped to different genes,5,112098700,112098855,156,*,156,13,0.525641026,1.207142857,0.083333333,3.25E-09,CpGisland,TRUE,U15,NS
2261,cg23860075,0.00000879,0.00000553,1.588096991,0.113283784,gain,ns,-0.0000134,0.0000094,-1.425493872,0.155020591,neg,ns,-0.008410076,0.00275456,-3.053147086,0.002460767,neg,ns,2.608929539,0.000153568,0.0000947,1.621133446,0.106005672,pos,ns,0.088711741,Meis1,Meis1_Intergenic_downstream,11,18877433,18877482,18877433,18877434,50,+,CGATAAGTGATTTCAATTTGAAATTGTTAGTAACTAATTTTATGGGTAAT,Downstream (2-3kb),11,18880668,19012002,131335,2,Meis1-203,134520,Meis1-206;Meis1-202;Meis1-209;Meis1-201;Meis1-203;Meis1-208;Meis1-207,Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1,0;0;0;0;0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,17,88,17268,ENSMUSG00000020160,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
27945,cg17593187,0.00000356,0.00000266,1.336969342,0.182212912,gain,ns,-0.00000644,0.00000452,-1.425339876,0.155065046,neg,ns,0.000434356,0.001324023,0.328057919,0.743089333,pos,ns,0.128958973,-0.0000607,0.0000455,-1.333663663,0.183293166,neg,ns,0.954712128,Rps6kc1,Rps6kc1_Intron,1,190807721,190807770,190807769,190807770,50,-,TTATTACTACGCAAGTTATTTTGTTCCACACCAGAGGTGGCTGTATTTCG,"Intron (Rps6kc1-204/Rps6kc1, intron 6 of 12)",1,190700202,190911747,211546,2,Rps6kc1-204,103977,Rps6kc1-204;Rps6kc1-206;Rps6kc1-203;Rps6kc1-201;Rps6kc1-205;Rps6kc1-208;Rps6kc1-207,Rps6kc1;Rps6kc1;Rps6kc1;Rps6kc1;Rps6kc1;Rps6kc1;Rps6kc1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,29,320119,ENSMUSG00000089872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4719,cg21818687,0.0000402,0.0000044,9.12912019,9.11E-18,gain,yes,-0.0000107,0.00000748,-1.425262043,0.155087518,neg,ns,-0.005038825,0.00219184,-2.298901984,0.022175366,neg,ns,1.654129195,0.000261999,0.0000754,3.475840279,0.000581918,pos,ns,0.826892195,Btbd9,Btbd9_Intron,17,30245806,30245855,30245854,30245855,50,+,CTACCAGTAAAAACTTCACATCTACAGCAACTGCCCCTCTATTACTGTCG,"Intron (Btbd9-202/Btbd9, intron 9 of 10)",17,30215524,30576488,360965,2,Btbd9-202,330633,Btbd9-202;Btbd9-203;Btbd9-201;Btbd9-218;Btbd9-208;Btbd9-221;Btbd9-224;Btbd9-205;Btbd9-219;Btbd9-209;Btbd9-206;Btbd9-220;Btbd9-210,Btbd9;Btbd9;Btbd9;Btbd9;Btbd9;Btbd9;Btbd9;Btbd9;Btbd9;Btbd9;Btbd9;Btbd9;Btbd9,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,5,224671,ENSMUSG00000062202,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7443,cg19676874,0.000100647,0.000012,8.404245162,1.58E-15,gain,yes,-0.000029,0.0000203,-1.425170436,0.15511397,neg,ns,0.000614899,0.005960474,0.103162709,0.91790054,pos,ns,0.037204375,0.000300133,0.00020498,1.46420584,0.144151027,pos,ns,0.625720074,Ostm1,Ostm1_Intron,10,42636447,42636496,42636447,42636448,50,+,CGTGATTGAAGGGTTTTTAACAATTAACATAATCAGAAAATGAGCTGAGA,"Intron (Ostm1-202/Ostm1, intron 2 of 5)",10,42583835,42698323,114489,1,Ostm1-202,52612,Ostm1-202;Ostm1-203,Ostm1;Ostm1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,21,22,14628,ENSMUSG00000038280,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19624,cg23613473,-0.00000365,0.00000295,-1.237371484,0.216885636,loss,ns,0.00000714,0.00000501,1.425154905,0.155118455,pos,ns,0.004002134,0.001467119,2.727886216,0.006737583,pos,ns,2.171495893,-0.000121862,0.0000505,-2.415302504,0.016300408,neg,ns,0.9341267,Gm8641,Gm8641_Intergenic_upstream,9,100167533,100167582,100167533,100167534,50,-,CGGTTAATAAGAAAAGCTGTCAGCAACAGAAAATGGCTGACATAATCCGT,Distal Intergenic,9,99946564,99947389,826,2,Gm8641-201,-220193,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,15,667456,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26934,cg17254187,-0.00000245,0.00000259,-0.946502683,0.344629439,loss,ns,0.00000628,0.00000441,1.425150572,0.155119706,pos,ns,0.0027989,0.0012908,2.168346083,0.030892706,pos,ns,1.510144043,-0.0000529,0.0000444,-1.192486203,0.233982636,neg,ns,0.950749934,Cacna1e,Cacna1e_fiveUTR,1,154799650,154799699,154799650,154799651,50,+,CGGTCTGGGCTCAGTCCACGCATCTCGGGCACCATCACAGAACATTGCTC,5' UTR,1,154398393,154864067,465675,2,Cacna1e-207,64368,Cacna1e-207;Cacna1e-206;Cacna1e-209;Cacna1e-204,Cacna1e;Cacna1e;Cacna1e;Cacna1e,0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,9,19,12290,ENSMUSG00000004110,conserved gene but different region,1,154799397,154799676,280,*,280,25,0.721428571,0.687285223,0.089285714,4.45E-18,CpGisland,TRUE,NA,NRS
22796,cg18466140,0.00000034,0.000000337,1.007702573,0.314383171,gain,ns,0.000000817,0.000000573,1.42505831,0.155146352,pos,ns,0.000460327,0.000167925,2.741266374,0.006475545,pos,ns,2.188723686,-0.00000954,0.00000577,-1.651754037,0.099597233,neg,ns,0.007640312,Dmbx1,Dmbx1_Intergenic_upstream,4,115963123,115963172,115963123,115963124,50,+,CGCGATTCTCTCGCTGTCACTTAGGGAGGCTCAGCGCGATTTGCGGCCTA,Distal Intergenic,4,115915120,115939926,24807,2,Dmbx1-202,-23197,Faah-202,Faah,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,15,42,140477,ENSMUSG00000028707,mapped to different genes,4,115962737,115963443,707,*,707,80,0.684582744,0.96711865,0.113154173,1.72E-65,CpGisland,TRUE,U3,Pr-B
26970,cg03874489,-0.00000603,0.00000286,-2.107991282,0.035834183,loss,ns,0.00000692,0.00000486,1.424658357,0.1552619,pos,ns,-0.000562627,0.001423224,-0.395318628,0.692879643,neg,ns,0.159342198,0.0000401,0.0000489,0.819741249,0.412993435,pos,ns,0.930379191,Myh7b,Myh7b_Exon,2,155633383,155633432,155633431,155633432,50,+,ATGCAGGACCTGGTGGACAAGCTGCAGAGCAAGGTCAAGAGCTACAAGCG,"Exon (Myh7b-201/Myh7b, exon 40 of 42)",2,155611212,155634307,23096,1,Myh7b-201,22171,Myh7b-201;Myh7b-202;Myh7b-203;Trpc4ap-201;Trpc4ap-202;Trpc4ap-210;Trpc4ap-206,Myh7b;Myh7b;Myh7b;Trpc4ap;Trpc4ap;Trpc4ap;Trpc4ap,0;4323;-19;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,6,668940,ENSMUSG00000074652,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15670,cg27569744,0.0000229,0.00000661,3.465256059,0.000604411,gain,ns,0.000016,0.0000112,1.424602996,0.155277899,pos,ns,0.010146501,0.003289543,3.084470979,0.00222278,pos,ns,2.65310359,-0.000255695,0.000113127,-2.260244678,0.024499601,neg,ns,0.65380488,Nfib,Nfib_Promoter,4,82705876,82705925,82705876,82705877,50,+,CGGCTAACTGCTTTGCTGGGCGATGCAGACTAAAGTTTATTTGCATTCTT,Promoter (<=1kb),4,82498321,82705750,207430,2,Nfib-212,-126,Nfib-212,Nfib,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,66,18028,ENSMUSG00000008575,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10001,cg14791398,0.0000075,0.0000074,1.013019406,0.311840894,gain,ns,-0.0000179,0.0000126,-1.424563024,0.155289451,neg,ns,0.006841274,0.003685464,1.856285515,0.064361548,pos,ns,1.19137352,-0.000467683,0.000126743,-3.690013361,0.000264806,neg,ns,0.56795535,Satb1,Satb1_Exon,17,51809190,51809239,51809238,51809239,50,+,CACTCACATTGTTAGACATTTCTGAATGTTCTTTCCCCTGAGTTGCCTCG,"Exon (Satb1-208/Satb1, exon 2 of 11)",17,51736187,51832672,96486,2,Satb1-208,23433,Satb1-208;Satb1-213;Satb1-204;Satb1-214;Satb1-203;Satb1-211;Satb1-207;Satb1-206;Satb1-202;Satb1-201;Satb1-209;Satb1-210,Satb1;Satb1;Satb1;Satb1;Satb1;Satb1;Satb1;Satb1;Satb1;Satb1;Satb1;Satb1,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,36,20230,ENSMUSG00000023927,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22802,cg04167064,0.00000933,0.00000435,2.145817616,0.032663796,gain,ns,-0.0000105,0.00000739,-1.424545286,0.155294578,neg,ns,-0.00509671,0.002164979,-2.354161837,0.019188208,neg,ns,1.716965591,0.00013797,0.0000745,1.853100295,0.064818095,pos,ns,0.105432998,Dmbx1,Dmbx1_Intergenic_upstream,4,115963203,115963252,115963203,115963204,50,-,CGAGGGGCCGCCAGATTGTTCCCTTCATAATTGATTGACTCTATTTGCCG,Distal Intergenic,4,115915119,115939926,24808,2,Dmbx1-203,-23326,Faah-202,Faah,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,15,42,140477,ENSMUSG00000028707,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
16455,cg21870003,0.00000731,0.00000221,3.308763551,0.001047456,gain,ns,-0.00000534,0.00000375,-1.424168451,0.155403524,neg,ns,-0.002559194,0.001099439,-2.327726621,0.020570014,neg,ns,1.68676541,0.00010634,0.0000378,2.81251281,0.005229168,pos,ns,0.94717474,Trir,Trir_Exon,8,85029500,85029549,85029548,85029549,50,-,GCTCCTGTAACCGTTGCAGTCTTCTGTCCCTTCACCCAGGTGGGCAAACG,"Exon (Trir-201/Trir, exon 2 of 3)",8,85026823,85030286,3464,1,Trir-201,2677,Asna1-201;Asna1-202;Asna1-204;Asna1-203;Trir-201,Asna1;Asna1;Asna1;Asna1;Trir,-4219;-4234;-4632;-4237;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,68544,ENSMUSG00000041203,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19489,cg21214122,0.000138913,0.0000109,12.78633565,2.36E-30,gain,yes,-0.0000263,0.0000185,-1.423970377,0.155460813,neg,ns,0.016239729,0.005407194,3.003355953,0.002887679,pos,ns,2.539451074,-0.000432291,0.000185953,-2.324734258,0.020731794,neg,ns,0.146639041,Cdh8,Cdh8_fiveUTR,8,99416416,99416465,99416416,99416417,50,-,CGCCTGCCTGCCAAATGTAACTGTGAAGTGATGTGGAAAAGTGAGCCGGG,Promoter (<=1kb),8,99024471,99416427,391957,2,Cdh8-207,0,Cdh8-207;Cdh8-204;Cdh8-201;Cdh8-206;Cdh8-203;Cdh8-205,Cdh8;Cdh8;Cdh8;Cdh8;Cdh8;Cdh8,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,16,12564,ENSMUSG00000036510,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
2453,cg22787311,0.0000195,0.00000826,2.358819076,0.018953402,gain,ns,0.00002,0.000014,1.423956172,0.155464922,pos,ns,0.005654645,0.004110084,1.375797782,0.169877424,pos,ns,0.769864332,0.000018,0.000141345,0.127687873,0.898478776,pos,ns,0.797321361,Gm16425,Gm16425_Exon,8,19536264,19536313,19536312,19536313,50,-,ACATCGAGTGTGAAGAGTGATGGGGCTGGTGGGGCGCGGGCTTCCTTCCG,Promoter (<=1kb),8,19535454,19538583,3130,1,Gm16425-201,810,Gm16425-201,Gm16425,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,670326,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9412,cg03120218,-0.00000558,0.00000599,-0.931331421,0.352406878,loss,ns,-0.0000145,0.0000102,-1.423820935,0.155504046,neg,ns,0.000838584,0.002982717,0.281147761,0.778784631,pos,ns,0.108582628,-0.0000764,0.000102575,-0.74494654,0.456868423,neg,ns,0.759976201,Zbtb16,Zbtb16_Intron,9,48674592,48674641,48674640,48674641,50,+,CTCCAGCTACAGTAAACAAATTTGTCAGCTCACTAGCTCATTAAGGTGCG,"Intron (Zbtb16-201/Zbtb16, intron 4 of 6)",9,48654297,48835945,181649,2,Zbtb16-201,161304,Zbtb16-201;Zbtb16-202,Zbtb16;Zbtb16,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,37,235320,ENSMUSG00000066687,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27412,cg21762820,0.0000418,0.00000448,9.334830228,2.02E-18,gain,yes,-0.0000108,0.00000761,-1.423275213,0.155662001,neg,ns,0.005862336,0.002229872,2.629001728,0.008990412,pos,ns,2.046220394,-0.000143692,0.0000767,-1.873798565,0.061898758,neg,ns,0.09802131,Fam78b,Fam78b_Exon,1,167001769,167001818,167001817,167001818,50,+,GGGCTGGATTCAGGCGTGCAATCAGATGGAGTTCTTCAACACCTACAGCG,Promoter (<=1kb),1,167001417,167091302,89886,1,Fam78b-205,352,Fam78b-205;Fam78b-206;Fam78b-204;Fam78b-202;Fam78b-201;Fam78b-203,Fam78b;Fam78b;Fam78b;Fam78b;Fam78b;Fam78b,0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,9,226610,ENSMUSG00000060568,conserved gene and region,1,167001817,167001863,47,*,47,9,0.765957447,1.309597523,0.191489362,6.75E-10,CpGisland,TRUE,U3,Pr-B
11882,cg18480384,-0.0000235,0.00000876,-2.677969903,0.007801762,loss,ns,-0.0000212,0.0000149,-1.423264457,0.155665115,neg,ns,-0.002681797,0.00435963,-0.615143345,0.538911352,neg,ns,0.268482668,0.00000527,0.000149927,0.035174667,0.971963101,pos,ns,0.829208659,Tle3,Tle3_Exon,9,61405332,61405381,61405380,61405381,50,-,AAAAATACTTAGTTTTTTGGCCGCCTGCCAGCCAGAGGCGGGCTGGATCG,"Exon (Tle3-203/Tle3, exon 1 of 11)",9,61372366,61418497,46132,1,Tle3-218,32966,Tle3-218;Tle3-204;Tle3-201;Tle3-215;Tle3-212;Tle3-208;Tle3-207;Tle3-217;Tle3-202;Tle3-206;Tle3-210;Tle3-205;Tle3-211;Tle3-213;Tle3-216;Tle3-203;Tle3-214,Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,30,21887,ENSMUSG00000032280,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8218,cg17999692,-0.0000125,0.00000905,-1.379956975,0.168594306,loss,ns,-0.0000219,0.0000154,-1.423223024,0.155677113,neg,ns,0.023531416,0.004505108,5.223274929,0.000000323,pos,ns,6.490626031,-0.000294864,0.00015493,-1.903207513,0.057939601,neg,ns,0.665205292,Zcchc7,Zcchc7_Intron,4,44880393,44880442,44880393,44880394,50,-,CGAATCAGCAGTTCGAGAAGGAAATCCCATTGATGGGCCAAGAGAGTGAC,"Intron (Zcchc7-203/Zcchc7, intron 2 of 8)",4,44756568,44932203,175636,1,Zcchc7-203,123825,Zcchc7-203;Zcchc7-207;Zcchc7-205;Zcchc7-201,Zcchc7;Zcchc7;Zcchc7;Zcchc7,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,27,27,319885,ENSMUSG00000035649,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15050,cg24243702,0.0000122,0.0000139,0.873233005,0.383211996,gain,ns,0.0000337,0.0000237,1.423104339,0.155711484,pos,ns,-0.004712139,0.006939993,-0.67898322,0.497655093,neg,ns,0.303071547,0.000482772,0.000238666,2.02279418,0.043952529,pos,ns,0.568671088,Gm6317,Gm6317_Intergenic_upstream,13,78629332,78629381,78629380,78629381,50,+,CATATTGTGCCAAAGCAATAACAAAGCCATCATTTTTAAGTTTGTTCACG,Distal Intergenic,13,78372987,78379128,6142,2,Gm6317-201,-250204,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,11,622365,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21507,cg02206490,0.0000663,0.0000127,5.218419825,0.000000331,gain,yes,-0.0000307,0.0000216,-1.422910437,0.15576765,neg,ns,0.024112536,0.006320818,3.81478081,0.000164504,pos,ns,3.783823636,-0.000770511,0.000217372,-3.544660402,0.000453715,neg,ns,0.328868125,Podn,Podn_Exon,4,108023334,108023383,108023382,108023383,50,-,CATAGATCTTGGTGAGATAGTTGGCAGCAAAGTCCACACTGATCAGGGCG,"Exon (Podn-203/Podn, exon 7 of 13)",4,108014791,108032090,17300,2,Podn-203,8707,Podn-203;Podn-207;Podn-201;Podn-202;Podn-206;Podn-205;Podn-208;Podn-204,Podn;Podn;Podn;Podn;Podn;Podn;Podn;Podn,0;0;0;0;0;-1808;7603;8954,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,242608,ENSMUSG00000028600,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23035,cg20031180,-0.00000156,0.00000268,-0.581994755,0.560993213,loss,ns,0.00000648,0.00000455,1.422834107,0.155789764,pos,ns,-0.000481428,0.001333956,-0.360902909,0.718417842,neg,ns,0.14362289,0.00000266,0.0000459,0.058092849,0.953712098,pos,ns,0.885115092,Frs2,Frs2_Exon,10,117074371,117074420,117074371,117074372,50,-,CGGGCTTCCCAAACAGGAGGCAAAGATGGTAGATTTTCATAGTTTAATAA,"Exon (Frs2-201/Frs2, exon 10 of 10)",10,117069427,117148510,79084,2,Frs2-201,74090,Frs2-201,Frs2,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,327826,ENSMUSG00000020170,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24350,cg09161926,0.00000461,0.00000537,0.85757774,0.391788178,gain,ns,0.000013,0.00000913,1.422651583,0.155842655,pos,ns,0.002410743,0.00267456,0.901360484,0.368096425,pos,ns,0.434038401,-0.0000805,0.000092,-0.875301943,0.382087309,neg,ns,0.096082669,Atn1,Atn1_Exon,6,124745772,124745821,124745820,124745821,50,+,TTCTTGGCCAGCTTGGAGCCCTCCAGTGGCACGAAGTACAGGTCGCTGCG,"Exon (Gm45234-201/Gm45234, exon 7 of 13)",6,124742544,124756524,13981,2,Atn1-201,10703,Atn1-201;Atn1-202;Atn1-203;Gm45234-201;Grcc10-201;Grcc10-204,Atn1;Atn1;Atn1;Gm45234;Grcc10;Grcc10,0;-147;10233;0;-4398;-4707,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,13498,ENSMUSG00000004263,conserved gene and region,6,124745541,124745877,337,*,337,55,0.71810089,1.278540388,0.163204748,1.62E-55,CpGisland,TRUE,U1,Pr-A
13193,cg03565180,-0.0000323,0.00000449,-7.19932083,4.60E-12,loss,yes,0.0000109,0.00000763,1.422487988,0.155890072,pos,ns,-0.004223038,0.002234638,-1.889808722,0.059716375,neg,ns,1.223906563,0.000125326,0.0000768,1.630806935,0.103946576,pos,ns,0.925576837,Tcf4,Tcf4_threeUTR,18,69687871,69687920,69687871,69687872,50,-,CGATGAAGTCATGTACATGACCGTTCTGTAGCAATAAATGTGCCATTTTT,3' UTR,18,69344489,69689079,344591,1,Tcf4-207,343382,Tcf4-201;Tcf4-207;Tcf4-240;Tcf4-254;Tcf4-246;Tcf4-206;Tcf4-202;Tcf4-257;Tcf4-248;Tcf4-205;Tcf4-253;Tcf4-238;Tcf4-249;Tcf4-250;Tcf4-226;Tcf4-230;Tcf4-234;Tcf4-258;Tcf4-252;Tcf4-243;Tcf4-204;Tcf4-203;Tcf4-251;Tcf4-214;Tcf4-211,Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;5491,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,66,21413,ENSMUSG00000053477,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18094,cg23734659,0.000115571,0.0000085,13.59407538,2.47E-33,gain,yes,-0.0000205,0.0000144,-1.422418001,0.15591036,neg,ns,0.009366628,0.004231327,2.213638229,0.027581402,pos,ns,1.559383662,0.0000465,0.000145515,0.319693178,0.749416275,pos,ns,0.273888793,Gnao1,Gnao1_Exon,8,93811378,93811427,93811378,93811379,50,-,CGGAGCAAGGCGATTGAGAAAAACCTCAAAGAGGATGGCATCAGCGCCGC,"Exon (Gnao1-202/Gnao1, exon 1 of 2)",8,93809966,93950403,140438,1,Gnao1-206,1412,Gnao1-206;Gnao1-202;Gnao1-201;Gnao1-203;Gnao1-207,Gnao1;Gnao1;Gnao1;Gnao1;Gnao1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,13,14681,ENSMUSG00000031748,conserved gene and region,8,93811274,93811435,162,*,162,16,0.648148148,0.965722802,0.098765432,1.97E-12,CpGisland,TRUE,U3,Pr-B
17438,cg22202372,0.0000429,0.0000136,3.163234887,0.001714893,gain,ns,-0.0000328,0.0000231,-1.422392619,0.155917719,neg,ns,-0.00488019,0.006755084,-0.722446964,0.470564363,neg,ns,0.327380966,0.000131606,0.000232307,0.566516855,0.571452391,pos,ns,0.90074493,Tox3,Tox3_Intron,8,90276785,90276834,90276785,90276786,50,-,CGAATGTAATTACTGAAGAAACTACAGCTAATCAGCTGTGAATTGTATCC,"Intron (Tox3-201/Tox3, intron 1 of 6)",8,90247040,90348343,101304,2,Tox3-201,71509,Tox3-201;Tox3-203;Tox3-202,Tox3;Tox3;Tox3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,19,244579,ENSMUSG00000043668,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1604,cg22350632,-0.0000729,0.0000136,-5.364278651,0.000000159,loss,yes,0.0000328,0.0000231,1.422341652,0.155932496,pos,ns,-0.020579334,0.006763191,-3.042843876,0.002544029,neg,ns,2.594478011,0.000538302,0.000232586,2.314427425,0.021297589,pos,ns,0.823160796,Gpr85,Gpr85_fiveUTR,6,13836898,13836947,13836898,13836899,50,-,CGCCATAGATGGATGGAGGATAAGGATACAGCCTCAGTCAAGTCTCATGA,5' UTR,6,13834458,13839942,5485,2,Gpr85-201,2995,Gpr85-201;Gpr85-203;Gpr85-202;Gpr85-204,Gpr85;Gpr85;Gpr85;Gpr85,0;0;0;2548,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,3,64450,ENSMUSG00000048216,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8143,cg21510166,-0.00000473,0.00000596,-0.794053323,0.427771804,loss,ns,0.0000144,0.0000101,1.422302379,0.155943883,pos,ns,0.002836216,0.002966933,0.955942278,0.339846263,pos,ns,0.468717501,-0.0000874,0.000102033,-0.856299991,0.392493276,neg,ns,0.735882063,Pax2,Pax2_Intron,19,44797139,44797188,44797139,44797140,50,-,CGGATAAGGCAGAGATGGTAAAAGGAAAAATTTAGGCCAGGCACAGCCCA,"Intron (Pax2-203/Pax2, intron 5 of 9)",19,44756045,44837851,81807,1,Pax2-203,41094,Pax2-203;Pax2-201;Pax2-202,Pax2;Pax2;Pax2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,35,166,18504,ENSMUSG00000004231,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
25462,cg05590009,0.0000153,0.00000491,3.126470277,0.00193689,gain,ns,0.0000119,0.00000834,1.422026941,0.156023762,pos,ns,0.001138389,0.002443293,0.465923963,0.641597121,pos,ns,0.192737593,-0.0000379,0.000084,-0.451072466,0.652252683,neg,ns,0.773706883,Snap25,Snap25_Exon,2,136770129,136770178,136770129,136770130,50,-,CGGACCTAGGAAAATTCTGCGGGCTTTGTGTGTGTCCCTGTAACAAGTAG,"Exon (Snap25-201/Snap25, exon 5 of 8)",2,136713453,136782428,68976,1,Snap25-201,56676,Snap25-201;Snap25-202,Snap25;Snap25,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,9,20614,ENSMUSG00000027273,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13459,cg22373432,0.0000231,0.00000901,2.567812712,0.010702721,gain,ns,-0.0000218,0.0000153,-1.421950617,0.156045902,neg,ns,-0.005901823,0.004483785,-1.316259221,0.189059453,neg,ns,0.723401603,0.000110341,0.000154197,0.715586069,0.474785603,pos,ns,0.879844175,Fgf17,Fgf17_Exon,14,70638937,70638986,70638985,70638986,50,-,CCCTCACGTACTGGTTAAAATTAGGAGACGGGTGATTCTCCCCCTTTGCG,"Exon (Fgf17-201/Fgf17, exon 3 of 5)",14,70636203,70642268,6066,2,Fgf17-201,3282,Dmtn-202;Dmtn-209;Fgf17-201;Fgf17-202,Dmtn;Dmtn;Fgf17;Fgf17,-2889;-2959;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,14171,ENSMUSG00000022101,conserved gene and region,14,70638802,70638986,185,*,185,14,0.589189189,0.872053872,0.075675676,2.48E-09,CpGisland,TRUE,U13,Hc-P
3235,cg16214654,-0.0000013,0.00000115,-1.129715516,0.25946949,loss,ns,-0.00000277,0.00000195,-1.421804661,0.156088248,neg,ns,0.000401857,0.000571173,0.703563681,0.482232626,pos,ns,0.31674341,-0.0000123,0.0000196,-0.626446078,0.531483409,neg,ns,0.061638314,Usp34,Usp34_fiveUTR,11,23306972,23307021,23306972,23306973,50,+,CGATGTGCGAGAACTGCGCAGACCTGGTGGAGGTGTTAAATGAAAGTAAG,Promoter (<=1kb),11,23306895,23490560,183666,1,Usp34-208,77,Usp34-208;Usp34-205,Usp34;Usp34,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,14,17847,ENSMUSG00000056342,conserved gene and region,11,23306695,23307266,572,*,572,79,0.791958042,0.891246894,0.138111888,1.46E-72,CpGisland,TRUE,U1,Pr-A
20977,cg22417789,0.0000737,0.00000845,8.713696292,1.80E-16,gain,yes,-0.0000204,0.0000144,-1.421631305,0.156138555,neg,ns,-0.000537612,0.004206888,-0.127793293,0.898395416,neg,ns,0.046532473,-0.000140276,0.000144675,-0.969596881,0.333003344,neg,ns,0.108892194,Spry2,Spry2_Promoter,14,105897342,105897391,105897342,105897343,50,-,CGGAACAGAGCAGTTGTTGTCCCAGAGGATATATCGCATCCGGTCCCAGC,Promoter (<=1kb),14,105891947,105896819,4873,2,Spry2-201,-572,Spry2-201,Spry2,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,8,12,24064,ENSMUSG00000022114,conserved gene and region,14,105896882,105897547,666,*,666,86,0.741741742,0.95483871,0.129129129,5.47E-76,CpGisland,TRUE,U1,Pr-A
14647,cg08657729,-0.0000502,0.0000086,-5.83353186,1.37E-08,loss,yes,0.0000208,0.0000146,1.421629951,0.156138948,pos,ns,-0.000697927,0.004281273,-0.163018519,0.870610071,neg,ns,0.060176313,0.000164611,0.000147233,1.11803636,0.264417131,pos,ns,0.917704908,Rbfox2,Rbfox2_Intron,15,77089412,77089461,77089460,77089461,50,-,TAGGCTCTACCACAAGCTCGGTGAAGTACACAGCCTCAATTACTAGAGCG,"Intron (1700109K24Rik-202/1700109K24Rik-202, intron 1 of 1)",15,77078990,77306928,227939,2,Rbfox2-204,217467,Rbfox2-204;Rbfox2-203;Rbfox2-202;Rbfox2-206;Rbfox2-208;Rbfox2-209;Rbfox2-201;Rbfox2-211;Rbfox2-215;Rbfox2-207,Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,20,93686,ENSMUSG00000033565,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15334,cg08988190,0.0000097,0.00000395,2.455704686,0.014609417,gain,ns,0.00000954,0.00000671,1.421552909,0.156161309,pos,ns,0.000783052,0.00196672,0.398151068,0.690792894,pos,ns,0.160652138,-0.0000885,0.0000676,-1.308191303,0.191777585,neg,ns,0.84013916,Cacna1i,Cacna1i_Exon,15,80389691,80389740,80389691,80389692,50,+,CGTCCGCCTAGGAGAACCTGTGGCTGGACAGCGTCTCTTTAATCATCAAG,"Exon (Cacna1i-202/Cacna1i, exon 33 of 37)",15,80287238,80398279,111042,1,Cacna1i-202,102453,Cacna1i-202;Cacna1i-205;Cacna1i-203;Cacna1i-204;Cacna1i-206;Cacna1i-201,Cacna1i;Cacna1i;Cacna1i;Cacna1i;Cacna1i;Cacna1i,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,11,239556,ENSMUSG00000022416,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22935,cg12765427,0.0000817,0.0000136,5.993039943,5.71E-09,gain,yes,0.0000329,0.0000231,1.421485686,0.156180822,pos,ns,0.02645479,0.006781692,3.900912798,0.000117551,pos,ns,3.929775346,-0.000752998,0.000233222,-3.228678995,0.001376921,neg,ns,0.224403387,Isl1,Isl1_Exon,13,116308306,116308355,116308354,116308355,50,+,ATCCCTAACAAAGCATGTACAGCTCTCGTCCAAATACTGATTACACTCCG,"Exon (Isl1-201/Isl1, exon 2 of 6)",13,116298281,116309689,11409,2,Isl1-201,1334,Isl1-201;Isl1-202;Isl1-203;Isl1-204;Isl1-205,Isl1;Isl1;Isl1;Isl1;Isl1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,14,16392,ENSMUSG00000042258,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
2238,cg21931649,-0.0000282,0.0000102,-2.75668312,0.006185069,loss,ns,-0.0000247,0.0000174,-1.421424741,0.156198515,neg,ns,0.006750581,0.005089764,1.326305118,0.185714953,pos,ns,0.731153127,-0.000587909,0.000175037,-3.358780451,0.000880592,neg,ns,0.754017388,Gm30341,Gm30341_Intergenic_upstream,3,18715891,18715940,18715939,18715940,50,+,CTCCACTCTGTCACACTTCTTGTATCATTTGATTTGGAAAGCAACATACG,Distal Intergenic,3,18753077,18753365,289,1,Gm30341-201,-37137,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,17,23,102632201,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11825,cg11304341,-0.00000602,0.00000242,-2.489586119,0.013313123,loss,ns,0.00000584,0.00000411,1.421424119,0.156198695,pos,ns,0.000630179,0.001203414,0.523659682,0.600889411,pos,ns,0.221205449,-0.0000201,0.0000414,-0.486836072,0.626718533,neg,ns,0.932996694,Camk2a,Camk2a_Intron,18,60969225,60969274,60969225,60969226,50,+,CGTGTTTCTGTTGACACCTCCAACTCCACGGCCCAGACCAGCAGGCTGAC,"Intron (Camk2a-203/Camk2a, intron 13 of 17)",18,60925618,60988152,62535,1,Camk2a-203,43607,Camk2a-203;Camk2a-201;Camk2a-204;Camk2a-202,Camk2a;Camk2a;Camk2a;Camk2a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,7,12322,ENSMUSG00000024617,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21586,cg20418746,0.0000456,0.00000954,4.773778472,0.00000279,gain,ns,0.000023,0.0000162,1.42133626,0.156224204,pos,ns,0.016556936,0.004749885,3.485755235,0.00056156,pos,ns,3.250603812,-0.0000812,0.000163348,-0.496812796,0.619673201,neg,ns,0.794358235,Zfhx3,Zfhx3_Intron,8,108467048,108467097,108467048,108467049,50,-,CGTTTAAACCTATAAATTGTTGTATAAACAGAAAGGCCAGTGTGGCACTA,"Intron (Zfhx3-204/Zfhx3, intron 3 of 15)",8,107942644,108961630,1018987,1,Zfhx3-204,524404,Zfhx3-204,Zfhx3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,114,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14790,cg25161386,-0.00000569,0.00000337,-1.688140808,0.092389892,loss,ns,0.00000813,0.00000572,1.421314944,0.156230393,pos,ns,0.000881293,0.001676203,0.525767328,0.599425768,pos,ns,0.222264592,-0.0000574,0.0000576,-0.995050313,0.320487848,neg,ns,0.047874663,Nufip2,Nufip2_fiveUTR,11,77686127,77686176,77686127,77686128,50,+,CGAGACGCGCTCAGATATACTGAGTGAGCCCTGAGAAGCAGTCTCAGATC,Promoter (<=1kb),11,77686155,77712741,26587,1,Nufip2-201,0,Nufip2-201;Nufip2-204;Nufip2-202;Nufip2-203,Nufip2;Nufip2;Nufip2;Nufip2,0;0;-1283;-1425,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,10,68564,ENSMUSG00000037857,conserved gene but different region,11,77685817,77686243,427,*,427,32,0.597189696,0.870096791,0.074941452,1.51E-20,CpGisland,TRUE,U1,Pr-A
19082,cg08029175,0.000114433,0.00000933,12.26415354,1.86E-28,gain,yes,-0.0000225,0.0000159,-1.42117095,0.156272207,neg,ns,-0.006325899,0.004643988,-1.362169549,0.174133306,neg,ns,0.759118155,0.000524012,0.000159706,3.281094509,0.001151954,pos,ns,0.409016869,Neurod2,Neurod2_fiveUTR,11,98329632,98329681,98329632,98329633,50,+,CGGGGTACCAGCCTCTATGCCAGGCCATATGGGCTTGGCACGTCACGGGC,Promoter (<=1kb),11,98325415,98329648,4234,2,Neurod2-201,0,Neurod2-201,Neurod2,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,22,18013,ENSMUSG00000038255,conserved gene but different region,11,98329512,98329756,245,*,245,22,0.657142857,0.835658915,0.089795918,5.08E-16,CpGisland,TRUE,U13,Hc-P
23244,cg10334858,0.0000375,0.00000432,8.678261656,2.32E-16,gain,yes,-0.0000104,0.00000733,-1.421131096,0.156283782,neg,ns,-0.001061459,0.00214845,-0.494058365,0.621614849,neg,ns,0.20647862,0.000134246,0.0000739,1.816953748,0.070189695,pos,ns,0.942448855,Eri3,Eri3_Exon,4,117593076,117593125,117593076,117593077,50,-,CGATGAATGGATGGCGAAGGAAGGCCTCTTAGATCCAAACGTCAAGTCAA,"Exon (Eri3-201/Eri3, exon 6 of 9)",4,117550365,117674297,123933,1,Eri3-201,42711,Eri3-201;Eri3-206;Eri3-202;Eri3-204,Eri3;Eri3;Eri3;Eri3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,97,140546,ENSMUSG00000033423,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18672,cg06970066,-0.00000487,0.0000047,-1.035442271,0.301269449,loss,ns,-0.0000114,0.00000799,-1.421112842,0.156289083,neg,ns,-0.000503545,0.002340188,-0.215173036,0.829773903,neg,ns,0.081040228,-0.000159259,0.0000805,-1.978896411,0.048712357,neg,ns,0.910551564,Tenm4,Tenm4_Exon,7,96702637,96702686,96702637,96702638,50,+,CGTAGAAACCTAGGCAAGCAGCCATTCCTAGGGACATTGCAGGACAACCT,"Exon (Tenm4-201/Tenm4, exon 9 of 33)",7,96171246,96908569,737324,1,Tenm4-201,531391,Tenm4-201;Tenm4-203;Tenm4-202;Tenm4-207,Tenm4;Tenm4;Tenm4;Tenm4,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,17,26,23966,ENSMUSG00000048078,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8228,cg24398061,0.0000108,0.00000442,2.450413883,0.014821632,gain,ns,0.0000107,0.00000752,1.421091112,0.156295395,pos,ns,0.00314492,0.002201773,1.428358321,0.15419547,pos,ns,0.811928385,0.00000938,0.0000757,0.12390246,0.901472803,pos,ns,0.104683479,Gm5246,Gm5246_Intergenic_downstream,19,44882816,44882865,44882864,44882865,50,-,TGCATGGCAGATTAGCTTGTCTTCCCAGCAAGGCACCCCGGGGCACCCCG,Distal Intergenic,19,44851009,44851979,971,1,Gm5246-201,31856,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,20,383450,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
20291,cg19634247,0.0000614,0.00000555,11.05398542,3.62E-24,gain,yes,-0.0000134,0.00000944,-1.421032228,0.156312498,neg,ns,0.010183724,0.002764776,3.683381031,0.000271496,pos,ns,3.566236909,-0.000152236,0.0000951,-1.601124154,0.110367939,neg,ns,0.075160211,Hoxc5,Hoxc5_Exon,15,102991025,102991074,102991025,102991026,50,-,CGGAGACGCCTCCAAATTCTATGGCTACGAGGCGCTCCCCAGACAGTCCC,"Exon (Hoxc8-201/Hoxc8, exon 1 of 2)",15,102967443,103015676,48234,1,Hoxc5-202,23582,Hoxc5-202;Hoxc8-201;Hoxc8-202,Hoxc5;Hoxc8;Hoxc8,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,72,134,15424,ENSMUSG00000022485,conserved gene and region,15,102990435,102991303,869,*,869,73,0.63406214,0.844205792,0.084004603,1.12E-49,CpGisland,TRUE,U13,Hc-P
19134,cg10934572,0.000003,0.00000397,0.756688422,0.44981124,gain,ns,0.00000958,0.00000675,1.420981667,0.156327186,pos,ns,0.004396091,0.001976155,2.224568619,0.026829967,pos,ns,1.571379867,-0.000123597,0.000068,-1.818673971,0.06992599,neg,ns,0.921498497,Emsy,Emsy_Exon,7,98595203,98595252,98595203,98595204,50,-,CGGTAAAACAGACCTGTCTGAGGGTCTAAAGTGTCCATCTCTTCAACCTC,"Exon (Emsy-202/Emsy, exon 18 of 20)",7,98587137,98656779,69643,2,Emsy-202,61527,Emsy-202;Emsy-207;Emsy-201;Emsy-203;Emsy-205;Emsy-206;Emsy-213;Emsy-212,Emsy;Emsy;Emsy;Emsy;Emsy;Emsy;Emsy;Emsy,0;0;0;-968;-187;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,13,16,233545,ENSMUSG00000035401,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1085,cg15260750,0.00000225,0.00000267,0.842280544,0.400280273,gain,ns,0.00000645,0.00000454,1.420953408,0.156335395,pos,ns,0.003219962,0.001328926,2.422981202,0.015966314,pos,ns,1.79679533,-0.000127157,0.0000457,-2.782322338,0.005727998,neg,ns,0.942944635,Virma,Virma_Exon,4,11527789,11527838,11527789,11527790,50,-,CGGCGTATTTGTGTTCAATTGTGTGACCTTGCCTCACCAACTGCACTTCT,"Exon (Virma-202/Virma, exon 14 of 24)",4,11485958,11550684,64727,1,Virma-202,41831,Virma-201;Virma-202;Virma-203,Virma;Virma;Virma,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,Exon,5,5,66185,ENSMUSG00000040720,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4241,cg08846327,0.00000709,0.00000414,1.710651747,0.088145844,gain,ns,-0.00001,0.00000704,-1.420850432,0.156365312,neg,ns,0.0000748,0.002061607,0.03628419,0.971079109,pos,ns,0.012745389,-0.000222206,0.0000709,-3.134138523,0.001888507,neg,ns,0.873977883,Trio,Trio_Exon,15,27854906,27854955,27854906,27854907,50,+,CGCAGCTGCAGGAAGAGCTCCAGCTTGATCTTGCGCTCCTGGAAGAGCTC,"Exon (Trio-201/Trio, exon 13 of 57)",15,27730651,28025848,295198,2,Trio-201,170893,Trio-201;Trio-210;Trio-204,Trio;Trio;Trio,0;0;-1529,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,11,223435,ENSMUSG00000022263,conserved gene and region,15,27854883,27855078,196,*,196,12,0.581632653,0.742424242,0.06122449,0.000000472,CpGisland,TRUE,NA,NRS
5210,cg16388915,-0.00000399,0.00000298,-1.336577715,0.182340643,loss,ns,0.0000072,0.00000507,1.420832517,0.156370518,pos,ns,0.002571135,0.00148443,1.732069129,0.084255955,pos,ns,1.074399394,-0.000112587,0.000051,-2.205456781,0.028155728,neg,ns,0.929201191,Chchd3,Chchd3_Intron,6,32853507,32853556,32853555,32853556,50,+,TCTTTCTTGCACCTGATCAATAAAGATGAACAGAACAGTTGTAAGGATCG,"Intron (Chchd3-206/Chchd3, intron 1 of 4)",6,32790976,32892330,101355,2,Chchd3-206,38774,Chchd3-206;Chchd3-201;Chchd3-203;Chchd3-210;Chchd3-208;Chchd3-204;Chchd3-205;Chchd3-202,Chchd3;Chchd3;Chchd3;Chchd3;Chchd3;Chchd3;Chchd3;Chchd3,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,5,66075,ENSMUSG00000053768,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27816,cg24143986,0.0000244,0.00000647,3.766194423,0.000198311,gain,ns,-0.0000156,0.000011,-1.420745085,0.156395923,neg,ns,-0.006943974,0.003219873,-2.156598853,0.031805606,neg,ns,1.497496326,0.000286383,0.000110731,2.586290529,0.010157234,pos,ns,0.85966307,Esrrg,Esrrg_fiveUTR,1,188043336,188043385,188043384,188043385,50,+,TTCTCTGCAGAATGTCAAACAAAGATCGACACATTGATTCCAGCTGTTCG,5' UTR,1,187608791,188043502,434712,1,Esrrg-204,434545,Esrrg-204;Esrrg-203;Esrrg-201;Esrrg-202,Esrrg;Esrrg;Esrrg;Esrrg,0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,60,26381,ENSMUSG00000026610,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12249,cg17762816,-0.00000311,0.00000205,-1.51611148,0.130510174,loss,ns,0.00000495,0.00000348,1.420632805,0.156428554,pos,ns,0.001793231,0.001020681,1.756897047,0.079922574,pos,ns,1.097330539,-0.0000177,0.0000351,-0.50293691,0.615365754,neg,ns,0.067505189,Ptch1,Ptch1_Intron,13,63566181,63566230,63566181,63566182,50,+,CGCAGCAGCTCCTTGATTCAATAGATGAGATGGAAGAAGAAAAAAAAGAA,"Intron (Ptch1-204/Ptch1, intron 1 of 23)",13,63508329,63573460,65132,2,Ptch1-204,7230,Ptch1-201;Ptch1-204;Ptch1-206;Ptch1-202;Ptch1-207;Ptch1-203;Ptch1-205,Ptch1;Ptch1;Ptch1;Ptch1;Ptch1;Ptch1;Ptch1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,36,19206,ENSMUSG00000021466,conserved gene and region,13,63565382,63566182,801,*,801,117,0.755305868,1.02591133,0.146067416,1.25E-110,CpGisland,TRUE,U1,Pr-A
6934,cg25810126,-0.00000225,0.00000137,-1.642768899,0.101444654,loss,ns,0.00000331,0.00000233,1.420591155,0.156440659,pos,ns,0.000458999,0.000683125,0.671910927,0.502140834,pos,ns,0.29917446,-0.000011,0.0000235,-0.468613723,0.639675114,neg,ns,0.954427718,Rev3l,Rev3l_threeUTR,10,39783150,39783199,39783198,39783199,50,+,GACATGTCTTCATCTACATGGCATCTTTCCTTACCTCTATGTGCCATACG,3' UTR,10,39732118,39875211,143094,1,Rev3l-201,51032,Rev3l-201;Rev3l-204;Rev3l-207,Rev3l;Rev3l;Rev3l,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,7,19714,ENSMUSG00000019841,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1712,cg27309241,0.00000825,0.00000614,1.344040128,0.17991821,gain,ns,-0.0000148,0.0000104,-1.420546736,0.15645357,neg,ns,-0.006839976,0.003054045,-2.23964489,0.025822695,neg,ns,1.587998441,0.000145269,0.000105028,1.383142107,0.16761664,pos,ns,0.892059771,Ppp1r3a,Ppp1r3a_Intron,6,14720345,14720394,14720393,14720394,50,+,TTATTAATATGTTTTCTGCAAAGCCTCTGCAAACTATTAATAGCAAAACG,"Intron (Ppp1r3a-201/Ppp1r3a, intron 3 of 3)",6,14713977,14755274,41298,2,Ppp1r3a-201,34880,Ppp1r3a-201,Ppp1r3a,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,3,140491,ENSMUSG00000042717,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8676,cg15241817,0.0000361,0.00000548,6.588945187,1.90E-10,gain,yes,-0.0000132,0.00000931,-1.420432184,0.156486871,neg,ns,0.002623487,0.002728115,0.961648071,0.336975897,pos,ns,0.472401162,-0.0000647,0.0000938,-0.689334068,0.491128703,neg,ns,0.745627148,Poll,Poll_Intergenic_downstream,19,45539084,45539133,45539084,45539085,50,+,CGAGTGCCCTGCTGTTTTAGAGCAGCGAGACTTTCATAATATCAAAACCT,Distal Intergenic,19,45552275,45560531,8257,2,Poll-201,21398,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,16,56626,ENSMUSG00000025218,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9297,cg02040389,-0.0000279,0.0000111,-2.513827453,0.012449403,loss,ns,0.0000268,0.0000188,1.420341597,0.156513208,pos,ns,-0.002825998,0.005518582,-0.512087782,0.608954195,neg,ns,0.215415374,-0.000252392,0.000189784,-1.329895775,0.18453027,neg,ns,0.774006108,Csmd3,Csmd3_Exon,15,48011103,48011152,48011151,48011152,50,-,TCTCCAATTAATTCAAACCCAAACTGGCATTCAAACCTTAAAACATCACG,"Exon (Csmd3-204/Csmd3, exon 13 of 69)",15,47580637,48791933,1211297,2,Csmd3-204,780781,Csmd3-204;Csmd3-201;Csmd3-209,Csmd3;Csmd3;Csmd3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,16,239420,ENSMUSG00000022311,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5803,cg22165136,0.00000143,0.00000232,0.614472267,0.53935401,gain,ns,-0.0000056,0.00000394,-1.420140813,0.156571596,neg,ns,-0.000214273,0.001154573,-0.185586332,0.852890543,neg,ns,0.069106701,0.0000514,0.0000397,1.295733282,0.196031334,pos,ns,0.942472539,Kdm3b,Kdm3b_Exon,18,34829243,34829292,34829291,34829292,50,+,GCTACCTAGCTACTTTGTAAGGCCTGATCTGGGCCCCAAGATGTACAACG,"Exon (Kdm3b-201/Kdm3b, exon 19 of 24)",18,34777047,34838660,61614,1,Kdm3b-201,52196,Kdm3b-201;Kdm3b-206;Kdm3b-202,Kdm3b;Kdm3b;Kdm3b,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,6,277250,ENSMUSG00000038773,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25385,cg05571134,0.0000745,0.0000217,3.443027984,0.000654322,gain,ns,-0.0000522,0.0000368,-1.42012252,0.156576917,neg,ns,0.001709575,0.010776173,0.158643957,0.874052693,pos,ns,0.058462385,0.0000116,0.000370592,0.031359803,0.975002778,pos,ns,0.648794188,Kif21b,Kif21b_Exon,1,136167174,136167223,136167174,136167175,50,-,CGACTCCTCTTTGTCGGAGGTCCTGAGGTACACACAGAATGTCTCTCGTG,"Exon (Kif21b-201/Kif21b, exon 28 of 35)",1,136131389,136177998,46610,1,Kif21b-201,35785,Kif21b-201;Kif21b-204;Kif21b-206;Kif21b-203;Kif21b-205,Kif21b;Kif21b;Kif21b;Kif21b;Kif21b,0;0;6816;4225;-2091,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,16565,ENSMUSG00000041642,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17275,cg24322955,0.0000231,0.00000965,2.393831041,0.017267594,gain,ns,-0.0000233,0.0000164,-1.420095604,0.156584745,neg,ns,0.015278025,0.004804125,3.180189082,0.001620656,pos,ns,2.790309153,-0.00056129,0.000165213,-3.397362264,0.000769174,neg,ns,0.35823433,Zbtb7b,Zbtb7b_Intron,3,89388195,89388244,89388195,89388196,50,+,CGCTGGCCTGCTGCCCCTCACCAGCTCCCGGCCCGGTTGGCACCTACCCA,"Intron (Zbtb7b-202/Zbtb7b, intron 1 of 2)",3,89377644,89392069,14426,2,Zbtb7b-202,3825,Zbtb7b-203;Zbtb7b-204;Zbtb7b-202;Zbtb7b-201;Zbtb7b-206;Zbtb7b-208;Zbtb7b-209;Zbtb7b-205;Zbtb7b-207,Zbtb7b;Zbtb7b;Zbtb7b;Zbtb7b;Zbtb7b;Zbtb7b;Zbtb7b;Zbtb7b;Zbtb7b,0;0;0;0;0;0;0;0;6532,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,12,22724,ENSMUSG00000028042,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8816,cg20626073,0.00000177,0.00000309,0.574064424,0.56634049,gain,ns,-0.00000746,0.00000525,-1.42007959,0.156589403,neg,ns,0.0000386,0.00153808,0.025074204,0.980011909,pos,ns,0.008768647,-0.0000241,0.0000529,-0.454756447,0.649602753,neg,ns,0.932676075,Rnf214,Rnf214_threeUTR,9,45867760,45867809,45867808,45867809,50,+,GTCAGCAGCTTCTCCAGGATCTTCTCCAGTTTGTCTACTGGTTGGGGCCG,3' UTR,9,45863425,45906869,43445,2,Rnf214-209,39060,Bace1-201;Rnf214-209;Rnf214-201;Rnf214-208;Rnf214-210;Rnf214-211;Rnf214-205;Rnf214-202;Rnf214-212;Rnf214-207,Bace1;Rnf214;Rnf214;Rnf214;Rnf214;Rnf214;Rnf214;Rnf214;Rnf214;Rnf214,0;0;0;0;0;0;0;1680;38578;4452,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,235315,ENSMUSG00000042790,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16185,cg03382963,-6.55E-09,0.00000913,-0.000717127,0.999428276,loss,ns,0.000022,0.0000155,1.420061132,0.156594772,pos,ns,0.009109446,0.004544084,2.004682749,0.045866278,pos,ns,1.338506504,-0.000331656,0.000156271,-2.122318987,0.034603574,neg,ns,0.626426544,Lhx1,Lhx1_Intergenic_upstream,11,84569667,84569716,84569667,84569668,50,+,CGAGATGAAGCAATTCCCCCAGAAATTACAGCAGGGGGATTGCATCTGAG,Distal Intergenic,11,84518284,84525535,7252,2,Lhx1-201,-44132,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,20,23,16869,ENSMUSG00000018698,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22764,cg19215838,0.0000359,0.0000211,1.704489668,0.089291587,gain,ns,0.0000509,0.0000358,1.420012209,0.156609003,pos,ns,-0.01203155,0.010491819,-1.146755356,0.252367077,neg,ns,0.597967303,0.000608316,0.000360813,1.685959803,0.0928097,pos,ns,0.673639576,Dmbx1,Dmbx1_Intron,4,115932002,115932051,115932002,115932003,50,+,CGCGTTTCACAAGCTGTCGAATTGTGCTTACATTGGTTAAAAGAATCTTT,"Intron (Dmbx1-203/Dmbx1, intron 1 of 4)",4,115915119,115939926,24808,2,Dmbx1-203,7875,Dmbx1-203;Dmbx1-202,Dmbx1;Dmbx1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,42,140477,ENSMUSG00000028707,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
21424,cg00967908,-0.0000015,0.000000871,-1.724421854,0.085628538,loss,ns,0.0000021,0.00000148,1.419826154,0.156663133,pos,ns,0.000664324,0.000433318,1.533108605,0.12626898,pos,ns,0.898703327,-0.0000255,0.0000149,-1.708247682,0.088591418,neg,ns,0.974356238,Zswim6,Zswim6_Exon,13,107733799,107733848,107733799,107733800,50,+,CGCATTGCTCTCAGTGCAATTTTGTATGCCAATTCAGCATCGTGAGGTAG,"Exon (Zswim6-204/Zswim6, exon 9 of 13)",13,107724617,107890064,165448,2,Zswim6-204,156216,Zswim6-204;Zswim6-201;Zswim6-203;Zswim6-202,Zswim6;Zswim6;Zswim6;Zswim6,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,14,26,67263,ENSMUSG00000032846,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14727,cg18831685,-0.00000507,0.00000257,-1.97236678,0.049456238,loss,ns,0.0000062,0.00000436,1.419530328,0.156749228,pos,ns,0.002527717,0.001278675,1.976825956,0.048947203,pos,ns,1.310272123,-0.000138815,0.000044,-3.156792745,0.00175201,neg,ns,0.046491549,Coro6,Coro6_Exon,11,77467280,77467329,77467328,77467329,50,-,CGGGAAGCTGCTCAGCACCGGCTTCAGCAGGATGAGTGAGCGGCAACTCG,"Exon (Coro6-201/Coro6, exon 5 of 10)",11,77462411,77470484,8074,1,Coro6-204,4869,Ankrd13b-206;Ankrd13b-201;Ankrd13b-205;Ankrd13b-202;Ankrd13b-204;Coro6-204;Coro6-206;Coro6-202;Coro6-205;Coro6-201;Coro6-203,Ankrd13b;Ankrd13b;Ankrd13b;Ankrd13b;Ankrd13b;Coro6;Coro6;Coro6;Coro6;Coro6;Coro6,9107;22337;6296;22349;9436;0;4635;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,216961,ENSMUSG00000020836,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20806,cg05747788,-0.0000119,0.00000652,-1.829561444,0.068275866,loss,ns,-0.0000157,0.0000111,-1.419470216,0.156766727,neg,ns,-0.004660546,0.003244325,-1.436522552,0.151862116,neg,ns,0.818550553,0.000180751,0.000111572,1.620038622,0.106240749,pos,ns,0.857911447,Fam160a2,Fam160a2_threeUTR,7,105381524,105381573,105381524,105381525,50,-,CGGAGTTCTGCAGCATGTTCTCGAGTTTGGCAAAGAGCACAGCCATGAAG,3' UTR,7,105371211,105400054,28844,2,Fam160a2-208,18481,Fam160a2-208;Fam160a2-213;Fam160a2-206;Fam160a2-201;Fam160a2-203;Fam160a2-202;Fam160a2-204;Fam160a2-210;Fam160a2-207;Fam160a2-211;Fam160a2-212;Fam160a2-205;Gm5901-203;Gm5901-201;Gm5901-202,Fam160a2;Fam160a2;Fam160a2;Fam160a2;Fam160a2;Fam160a2;Fam160a2;Fam160a2;Fam160a2;Fam160a2;Fam160a2;Fam160a2;Gm5901;Gm5901;Gm5901,0;0;0;0;0;0;0;0;0;0;7941;7538;6486;6474;3701,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,5,5,74349,ENSMUSG00000044465,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5868,cg26521131,-0.00000135,0.00000838,-0.161388745,0.87189236,loss,ns,0.0000202,0.0000142,1.419438543,0.156775947,pos,ns,-0.00061009,0.004172705,-0.146209763,0.883850828,neg,ns,0.053621027,-0.0000672,0.000143499,-0.468034042,0.640089128,neg,ns,0.643865439,Sox2,Sox2_Intergenic_downstream,3,35084798,35084847,35084798,35084799,50,+,CGTTGGAGTTTCCCTGTTATTTGTCTACTTTTTGAGGATTAGAACTTCCG,Distal Intergenic,3,34650405,34652461,2057,1,Sox2-201,434393,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,62,20674,ENSMUSG00000074637,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15933,cg20613097,0.0000767,0.0000125,6.127401997,2.71E-09,gain,yes,-0.0000302,0.0000213,-1.419327168,0.156808375,neg,ns,0.014448995,0.006232771,2.318229584,0.021087315,pos,ns,1.675978707,-0.000451459,0.000214344,-2.106229168,0.035988091,neg,ns,0.468023094,Gm12416,Gm12416_Intergenic_upstream,4,83915284,83915333,83915284,83915285,50,-,CGGAGTTGATTTTCCCCAGAATAATTGCATACAATGAGCACAAATGTTTA,Distal Intergenic,4,84104895,84105902,1008,1,Gm12416-201,-189611,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,11,668010,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17229,cg15973496,0.00000147,0.00000183,0.806353058,0.420657456,gain,ns,0.00000441,0.00000311,1.419174772,0.156852754,pos,ns,0.001749627,0.000909955,1.922760534,0.055426122,pos,ns,1.256285505,0.0000022,0.0000313,0.070394114,0.943925365,pos,ns,0.050302906,Nog,Nog_Intergenic_downstream,11,89299086,89299135,89299086,89299087,50,-,CGAGCATGTCTCCCAGGCGCCAGGAAGATTAAATGAAAGAATCATAAGAT,Distal Intergenic,11,89300638,89302332,1695,2,Nog-201,3246,Nog-201,Nog,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,36,18121,ENSMUSG00000048616,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
21584,cg15023125,-0.00000912,0.00000241,-3.788901453,0.000181767,loss,ns,0.0000058,0.00000409,1.41909745,0.156875274,pos,ns,-0.00274653,0.001197517,-2.293520816,0.022486901,neg,ns,1.648070393,0.000037,0.0000412,0.899169032,0.369260529,pos,ns,0.953537066,Zfhx3,Zfhx3_Intron,8,108455285,108455334,108455333,108455334,50,-,GCATCTGGACATGAATTCAATATGGATTGCTTTAATTAAATGGCTAAGCG,"Intron (Zfhx3-204/Zfhx3, intron 3 of 15)",8,107942644,108961630,1018987,1,Zfhx3-204,512641,Zfhx3-204,Zfhx3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,114,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8417,cg25296103,0.0000372,0.00000722,5.144515559,0.000000477,gain,yes,-0.0000174,0.0000123,-1.418906349,0.156930944,neg,ns,0.002656397,0.00359435,0.73904804,0.460437034,pos,ns,0.336829752,-0.000266272,0.000123609,-2.154138309,0.031999736,neg,ns,0.209853268,Zeb2,Zeb2_Intron,2,45103470,45103519,45103518,45103519,50,+,ATCATACCTAAGGCATTCAAAAGACCGCCGTGTCAGGGGTTCAGCTAACG,"Intron (Zeb2-212/Zeb2, intron 3 of 10)",2,44983632,45117395,133764,2,Zeb2-212,13876,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219;Zeb2-211;Zeb2-210;Zeb2-205;Zeb2-223;Zeb2-217;Zeb2-225;Zeb2-204,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;6557;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23625,cg27390141,-0.0000124,0.00000671,-1.845165819,0.065967052,loss,ns,0.0000162,0.0000114,1.418845546,0.15694866,pos,ns,-0.003036002,0.003340821,-0.908759263,0.364183165,neg,ns,0.438680134,-0.000164625,0.000114891,-1.432888051,0.152897505,neg,ns,0.810921133,Dll4,Dll4_Exon,2,119332648,119332697,119332648,119332649,50,+,CGCCCAGCTTAAAAACACAAACCAGAAGAAGGAGCTGGAAGTGGACTGTG,"Exon (Dll4-201/Dll4, exon 9 of 11)",2,119325784,119335962,10179,1,Dll4-201,6864,Dll4-201;Dll4-202,Dll4;Dll4,0;4110,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,20,54485,ENSMUSG00000027314,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21224,cg20177885,0.0000426,0.0000148,2.873262985,0.004343026,gain,ns,-0.0000357,0.0000252,-1.418570137,0.157028923,neg,ns,0.005558252,0.00737264,0.753902485,0.451480021,pos,ns,0.345361463,-0.0000528,0.000253544,-0.208297959,0.835133113,neg,ns,0.375425861,Smurf2,Smurf2_Exon,11,106859739,106859788,106859739,106859740,50,-,CGACTGCAGTCCACAACTTGTCCTCCTGTGCCTATTCGGTCTCTGGACTG,"Exon (Smurf2-202/Smurf2, exon 5 of 18)",11,106820066,106920715,100650,2,Smurf2-202,60927,Smurf2-202;Smurf2-204;Smurf2-201;Smurf2-206,Smurf2;Smurf2;Smurf2;Smurf2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,4,66313,ENSMUSG00000018363,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12085,cg25259085,-0.00000144,0.00000411,-0.351386864,0.72553684,loss,ns,0.0000099,0.00000698,1.418428892,0.157070099,pos,ns,0.005589663,0.002044358,2.734189474,0.006612969,pos,ns,2.179603522,-0.00017995,0.0000703,-2.559549276,0.010955028,neg,ns,0.920717648,Ccar1,Ccar1_Exon,10,62766750,62766799,62766750,62766751,50,-,CGGCGCCTTAGTTCCATCATGTCACAACTGGGACTGAAAAACAGACATAA,"Exon (Ccar1-201/Ccar1, exon 11 of 25)",10,62743928,62792231,48304,2,Ccar1-201,25432,Ccar1-201;Ccar1-211;Ccar1-207;Ccar1-206;Ccar1-205;Ccar1-210;Ccar1-203;Ccar1-208;Gm48145-201,Ccar1;Ccar1;Ccar1;Ccar1;Ccar1;Ccar1;Ccar1;Ccar1;Gm48145,0;0;-3283;0;0;0;25471;5177;4999,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,10,67500,ENSMUSG00000020074,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21670,cg19276964,-0.0000128,0.00000307,-4.17469411,0.0000388,loss,ns,-0.0000074,0.00000522,-1.418363841,0.157089065,neg,ns,-0.004933856,0.001529063,-3.226717267,0.001386083,neg,ns,2.858210682,0.0000488,0.0000526,0.927178796,0.354555001,pos,ns,0.937997323,Zfhx3,Zfhx3_Exon,8,108800325,108800374,108800373,108800374,50,+,CAACAAGTTCACGACGGACAACCTGGACATGCTGGGCCTGCACATGAACG,"Exon (Zfhx3-204/Zfhx3, exon 9 of 16)",8,107942644,108961630,1018987,1,Zfhx3-204,857681,Zfhx3-204;Zfhx3-202;Zfhx3-201,Zfhx3;Zfhx3;Zfhx3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,46,177,11906,ENSMUSG00000038872,conserved gene and region,8,108800199,108800500,302,*,302,21,0.612582782,0.741407529,0.069536424,5.06E-13,CpGisland,TRUE,U11,Tr-P
18121,cg15175780,0.00000185,0.00000525,0.352344158,0.724819593,gain,ns,0.0000126,0.00000892,1.418297979,0.15710827,pos,ns,-0.000324676,0.00261268,-0.124269355,0.90118255,neg,ns,0.045187227,0.0000188,0.0000898,0.208836848,0.83471276,pos,ns,0.905206679,Vezt,Vezt_Exon,10,93971696,93971745,93971696,93971697,50,-,CGGACTTTACCCCTGTAGGCAGAGATGAAAACAGCTCTGGAAGATGTACT,"Exon (Vezt-202/Vezt, exon 12 of 12)",10,93939165,93974508,35344,2,Vezt-208,2763,Vezt-208;Vezt-204;Vezt-201;Vezt-202;Vezt-203,Vezt;Vezt;Vezt;Vezt;Vezt,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,215008,ENSMUSG00000036099,conserved gene and region,10,93971461,93971697,237,*,237,14,0.514767933,0.892655367,0.05907173,5.98E-08,CpGisland,TRUE,NA,NRS
21707,cg27505352,-0.00000326,0.00000189,-1.731378121,0.084379242,loss,ns,-0.00000454,0.0000032,-1.418157187,0.157149329,neg,ns,-0.001917292,0.000938402,-2.043144824,0.041883421,neg,ns,1.377957856,0.0000488,0.0000323,1.510882863,0.131836939,pos,ns,0.047850352,Prpf38b,Prpf38b_threeUTR,3,108910375,108910424,108910375,108910376,50,+,CGCTGCAAGACTGAGTCAATCCTGCTAACGAAACAAGAACTGAGACAAGA,3' UTR,3,108902805,108911696,8892,2,Prpf38b-204,1272,Prpf38b-204;Prpf38b-201;Prpf38b-208;Prpf38b-202;Prpf38b-203;Prpf38b-206;Prpf38b-205;Prpf38b-207,Prpf38b;Prpf38b;Prpf38b;Prpf38b;Prpf38b;Prpf38b;Prpf38b;Prpf38b,0;0;0;-4790;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,13,66921,ENSMUSG00000027881,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
19757,cg03671103,0.0000359,0.00000899,3.997308144,0.0000801,gain,ns,0.0000217,0.0000153,1.418140244,0.15715427,pos,ns,0.006496474,0.004475678,1.451505874,0.147650272,pos,ns,0.830765747,0.000199908,0.000153918,1.298791667,0.19498068,pos,ns,0.619745551,Gpat3,Gpat3_Intergenic_downstream,5,101032938,101032987,101032986,101032987,50,-,TTATCAATCCAGCGGTGCCATCAGACATATTGCCCTGAAGATCAAGTCCG,Distal Intergenic,5,100846417,100846850,434,1,Gpat3-205,186570,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,15,15,231510,ENSMUSG00000029314,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10901,cg02908693,0.00000876,0.00000272,3.218888346,0.001423212,gain,ns,-0.00000656,0.00000462,-1.418134392,0.157155977,neg,ns,0.008191597,0.00135459,6.047287034,4.23E-09,pos,ns,8.373324722,-0.000185622,0.0000466,-3.984657859,0.0000843,neg,ns,0.954130546,Tcf7l2,Tcf7l2_Intron,19,55765735,55765784,55765735,55765736,50,-,CGTCATCAAACTAATTGTTGTTTGAATTACCTGTTATGATCCGATGACAA,"Intron (Tcf7l2-213/Tcf7l2, intron 3 of 13)",19,55741820,55933229,191410,1,Tcf7l2-213,23915,Tcf7l2-213;Tcf7l2-201;Tcf7l2-208;Tcf7l2-211;Tcf7l2-212;Tcf7l2-206;Tcf7l2-204;Tcf7l2-205;Tcf7l2-222;Tcf7l2-215;Tcf7l2-214;Tcf7l2-207;Tcf7l2-202;Tcf7l2-209;Tcf7l2-210;Tcf7l2-217,Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,55,88,21416,ENSMUSG00000024985,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24877,cg26989101,0.0000567,0.00000675,8.411214201,1.51E-15,gain,yes,-0.0000163,0.0000115,-1.417985992,0.157199265,neg,ns,0.003189139,0.0033574,0.949883774,0.342911254,pos,ns,0.464818262,-0.000063,0.000115461,-0.545696806,0.585666816,neg,ns,0.090093418,Pitx2,Pitx2_Exon,3,129204458,129204507,129204506,129204507,50,-,TTGAATGTCTCTTCTCCAAAGACTCCGAAATCAAAAAGGTCGAGTTCACG,"Exon (Pitx2-207/Pitx2, exon 3 of 5)",3,129199878,129219590,19713,1,Pitx2-207,4580,Pitx2-207;Pitx2-201;Pitx2-203;Pitx2-205;Pitx2-204,Pitx2;Pitx2;Pitx2;Pitx2;Pitx2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,24,18741,ENSMUSG00000028023,mapped to different genes,3,129204274,129204673,400,*,400,37,0.6775,0.810071155,0.0925,4.25E-27,CpGisland,TRUE,U3,Pr-B
18374,cg27489463,0.0000208,0.00000661,3.145428708,0.001819299,gain,ns,-0.0000159,0.0000112,-1.417899812,0.157224408,neg,ns,-0.009991064,0.003291994,-3.034958704,0.00260949,neg,ns,2.583444317,0.0003194,0.000113211,2.821267755,0.005092076,pos,ns,0.11529396,Otp,Otp_threeUTR,13,94884008,94884057,94884008,94884009,50,-,CGCCATTTTACGTACCAGGGAGTCGACTCAGGATCTGAAATCAGACACCA,3' UTR,13,94875602,94885130,9529,1,Otp-201,8406,Otp-201;Otp-202,Otp;Otp,0;1408,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,34,18420,ENSMUSG00000021685,conserved gene and region,13,94882781,94884032,1252,*,1252,140,0.726837061,0.875083,0.111821086,2.69E-113,CpGisland,TRUE,U13,Hc-P
5068,cg11657870,-0.00000274,0.00000201,-1.363285699,0.17378177,loss,ns,0.00000485,0.00000342,1.417765588,0.157263574,pos,ns,0.002550881,0.001001192,2.547842448,0.011321563,pos,ns,1.946093628,-0.0000833,0.0000344,-2.41825455,0.016171243,neg,ns,0.956006586,Sgms1,Sgms1_threeUTR,19,32142810,32142859,32142810,32142811,50,-,CGATACAGGTACAGCGTGCCAACTATGCAGAAAAATCTTCTGCTAATAAT,3' UTR,19,32122727,32388512,265786,2,Sgms1-201,245653,Sgms1-201;Sgms1-212;Sgms1-209;Sgms1-215;Sgms1-214;Sgms1-206,Sgms1;Sgms1;Sgms1;Sgms1;Sgms1;Sgms1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,8,208449,ENSMUSG00000040451,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21977,cg15259454,-0.0000204,0.0000062,-3.286959717,0.001129026,loss,ns,0.0000149,0.0000105,1.417647481,0.157298043,pos,ns,0.001428994,0.003084079,0.46334545,0.643441904,pos,ns,0.191490659,-0.000208647,0.000106061,-1.967231272,0.050048001,neg,ns,0.914291149,Ntng1,Ntng1_Exon,3,109935126,109935175,109935174,109935175,50,-,TTCAAAATCAAACATCAGCTCAGGGGGGTGTGCCAGCTCAGGGGTACTCG,"Exon (Ntng1-211/Ntng1, exon 3 of 7)",3,109780040,110143004,362965,2,Ntng1-211,207829,Ntng1-211;Ntng1-208;Ntng1-206;Ntng1-202;Ntng1-203;Ntng1-204;Ntng1-205;Ntng1-207;Ntng1-209;Ntng1-210;Ntng1-212,Ntng1;Ntng1;Ntng1;Ntng1;Ntng1;Ntng1;Ntng1;Ntng1;Ntng1;Ntng1;Ntng1,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,7,80883,ENSMUSG00000059857,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1333,cg04927889,0.0000175,0.00000346,5.047598307,0.000000764,gain,yes,-0.00000834,0.00000588,-1.417559948,0.157323593,neg,ns,0.004172127,0.00172316,2.421206722,0.016042978,pos,ns,1.794715009,-0.000094,0.0000593,-1.586590545,0.113624867,neg,ns,0.063337298,Fezf2,Fezf2_Intron,14,12347038,12347087,12347086,12347087,50,-,GCGTATCACAACAAACTGCTCAAAGACGCTCCAGCACTTTCAACAGGCCG,"Intron (Fezf2-202/Fezf2, intron 1 of 5)",14,12343388,12348189,4802,2,Fezf2-202,1102,Fezf2-203;Fezf2-201;Fezf2-202,Fezf2;Fezf2;Fezf2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,45,54713,ENSMUSG00000021743,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
22094,cg17529210,-0.0000304,0.00000656,-4.629295256,0.0000054,loss,ns,-0.0000158,0.0000112,-1.41754039,0.157329302,neg,ns,-0.005544376,0.003267083,-1.697041672,0.090692483,neg,ns,1.042428707,0.00000448,0.000112355,0.039910496,0.968190174,pos,ns,0.855713333,Sf3b3,Sf3b3_Exon,8,110817553,110817602,110817601,110817602,50,+,CTGCTGCTTTCTCTGAGCTTTCGTGGCCTCAGTGTAGGCATTGTGGTCCG,"Exon (Sf3b3-201/Sf3b3, exon 18 of 26)",8,110810239,110846776,36538,2,Sf3b3-201,29174,Sf3b3-201,Sf3b3,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,101943,ENSMUSG00000033732,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18439,cg26004603,-0.0000138,0.00000496,-2.77769461,0.005808162,loss,ns,0.0000119,0.00000843,1.417510437,0.157338046,pos,ns,0.004811254,0.002469392,1.948355382,0.052274563,pos,ns,1.281709586,-0.000272402,0.0000849,-3.207664343,0.001478052,neg,ns,0.834164948,Cnot1,Cnot1_threeUTR,8,95730474,95730523,95730522,95730523,50,-,AGTGCAATGAGTCGAACAAAGGCATCCAGGTTGTGATAGCACTTGGCTCG,3' UTR,8,95719451,95807462,88012,2,Cnot1-202,76939,Cnot1-202;Cnot1-201;Cnot1-203;Cnot1-208;Cnot1-216;Cnot1-211;Cnot1-212;Cnot1-213;Cnot1-215,Cnot1;Cnot1;Cnot1;Cnot1;Cnot1;Cnot1;Cnot1;Cnot1;Cnot1,0;0;0;0;0;0;0;2213;6206,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,8,24,234594,ENSMUSG00000036550,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24008,cg25127336,-0.0000124,0.00000499,-2.477645997,0.0137578,loss,ns,0.000012,0.00000848,1.417495213,0.15734249,pos,ns,0.006031681,0.002482955,2.429235196,0.015698693,pos,ns,1.804136496,-0.000236126,0.0000854,-2.765313605,0.006027654,neg,ns,0.867243246,Srgap1,Srgap1_Exon,10,121829231,121829280,121829279,121829280,50,+,ACGAATGTTTCCAAATCCCCATTAAACAACTTAGTATTATACTGTGAGCG,"Exon (Srgap1-202/Srgap1, exon 12 of 22)",10,121780991,122047308,266318,2,Srgap1-201,218028,Srgap1-201;Srgap1-202,Srgap1;Srgap1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,117600,ENSMUSG00000020121,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26636,cg23928927,-0.00000186,0.00000166,-1.123920062,0.261916508,loss,ns,0.00000399,0.00000282,1.417478698,0.157347311,pos,ns,0.000715345,0.000825399,0.866665286,0.386795727,pos,ns,0.412518332,0.000019,0.0000284,0.66960975,0.503605023,pos,ns,0.040730796,Hmgb1,Hmgb1_fiveUTR,5,149051420,149051469,149051420,149051421,50,-,CGGTCTGAAGTTTCTCCGAGTAAACAAGGATGAGGGACAAAAGCCACTCC,5' UTR,5,149046702,149053040,6339,2,Hmgb1-201,1571,Hmgb1-201;Hmgb1-203;Hmgb1-202;Hmgb1-210;Hmgb1-209;Hmgb1-208;Hmgb1-207;Hmgb1-206;Hmgb1-205;Hmgb1-204,Hmgb1;Hmgb1;Hmgb1;Hmgb1;Hmgb1;Hmgb1;Hmgb1;Hmgb1;Hmgb1;Hmgb1,0;-120;0;0;-973;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,3,15289,ENSMUSG00000066551,mapped to different genes,5,149051234,149051509,276,*,276,26,0.608695652,1.017583664,0.094202899,2.09E-19,CpGisland,TRUE,U1,Pr-A
26140,cg14679263,-0.000000963,0.000000643,-1.49632342,0.13558677,loss,ns,-0.00000155,0.00000109,-1.417395852,0.157371499,neg,ns,0.00039502,0.000320155,1.233839953,0.218197161,pos,ns,0.661150905,-0.0000168,0.000011,-1.529973982,0.127042927,neg,ns,0.981055662,Lmo4,Lmo4_Exon,3,144193957,144194006,144194005,144194006,50,-,GTAGGTCTATCATGTTCACAAAATAAACTGCCATTGATGTAGTGAAACCG,"Exon (Lmo4-203/Lmo4, exon 4 of 5)",3,144188530,144202396,13867,2,Lmo4-203,8390,Lmo4-203;Lmo4-201;Lmo4-202;Lmo4-207;Lmo4-206;Lmo4-208,Lmo4;Lmo4;Lmo4;Lmo4;Lmo4;Lmo4,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,18,54,16911,ENSMUSG00000028266,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19784,cg10103348,-0.000000812,0.00000061,-1.332415015,0.183702447,loss,ns,0.00000147,0.00000104,1.417362758,0.157381162,pos,ns,0.000706725,0.000303414,2.329245018,0.020488347,pos,ns,1.688493083,-0.0000129,0.0000104,-1.24033743,0.215788567,neg,ns,0.020399355,Msl2,Msl2_Exon,9,101075338,101075387,101075338,101075339,50,+,CGACCCCGGAGACCCCAAGGCGTTTACTGAGATTAACAGGCTCTTGCCTT,"Exon (Msl2-202/Msl2, exon 1 of 3)",9,101074101,101101785,27685,1,Msl2-202,1237,Msl2-202;Msl2-201,Msl2;Msl2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,19,77853,ENSMUSG00000066415,conserved gene and region,9,101075182,101075428,247,*,247,16,0.514170041,0.987506247,0.064777328,1.37E-09,CpGisland,TRUE,U1,Pr-A
26410,cg19695777,0.0000328,0.00000308,10.63316525,1.02E-22,gain,yes,-0.00000743,0.00000524,-1.417346333,0.157385958,neg,ns,0.005482714,0.00153503,3.571729957,0.000410966,pos,ns,3.386194417,-0.0000959,0.0000528,-1.816011717,0.070334453,neg,ns,0.049612932,Cdx2,Cdx2_fiveUTR,5,147307262,147307311,147307262,147307263,50,-,CGGCCTTCCGTGATTAACGAGTGTTTACAAGACTCTATTAGTAATGACAC,Promoter (<=1kb),5,147300805,147307270,6466,2,Cdx2-201,0,Cdx2-201,Cdx2,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,7,12591,ENSMUSG00000029646,conserved gene and region,5,147307218,147307280,63,*,63,8,0.682539683,1.095652174,0.126984127,0.00000033,CpGisland,TRUE,U13,Hc-P
17163,cg16932889,-0.00000312,0.00000417,-0.749756434,0.453970017,loss,ns,0.00001,0.00000708,1.417329272,0.157390939,pos,ns,0.007274967,0.002073989,3.507717749,0.000518814,pos,ns,3.284988027,-0.000232813,0.0000713,-3.264152774,0.001220634,neg,ns,0.907813898,Ash1l,Ash1l_fiveUTR,3,88965908,88965957,88965956,88965957,50,-,TGTGATGGACCCTAGAAATACTGCTATGTTAGGATTGGGTTCTGATTCCG,5' UTR,3,88950622,89079375,128754,1,Ash1l-202,15286,Ash1l-202;Ash1l-201,Ash1l;Ash1l,0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,5,192195,ENSMUSG00000028053,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24590,cg25687751,-0.000000358,0.00000168,-0.213506119,0.831072565,loss,ns,-0.00000403,0.00000285,-1.416968995,0.157496167,neg,ns,-0.000487353,0.000833807,-0.584491813,0.55931459,neg,ns,0.252343851,0.00000333,0.0000287,0.11612553,0.907628245,pos,ns,0.950213738,Sfpq,Sfpq_Intron,4,127032728,127032777,127032728,127032729,50,+,CGCAAATGGCAATGGACATTAGGACCCGGATGTAGTATTCCTGCTTGCTC,"Intron (Sfpq-206/Sfpq, intron 7 of 9)",4,127023527,127037013,13487,1,Sfpq-206,9201,Sfpq-201;Sfpq-206;Sfpq-204,Sfpq;Sfpq;Sfpq,0;0;6772,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,12,71514,ENSMUSG00000028820,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7250,cg03056190,-0.00000447,0.00000849,-0.526884796,0.598650407,loss,ns,0.0000204,0.0000144,1.416775381,0.15755274,pos,ns,-0.005681689,0.004225736,-1.344544221,0.179755443,neg,ns,0.74531795,0.00024085,0.000145323,1.657345305,0.098461299,pos,ns,0.109179585,Gm8707,Gm8707_Intron,9,41736364,41736413,41736364,41736365,50,+,CGAAGTTGATTTATTGTTCTACACGACATTAATGTAACTATGTGCTTGAC,"Intron (Gm35835-202/Gm35835-202, intron 2 of 4)",9,41654303,41655282,980,1,Gm8707-201,82061,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,12,667566,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
24206,cg12574180,-0.000000758,0.000000994,-0.762027875,0.446622738,loss,ns,-0.00000239,0.00000169,-1.416681621,0.157580141,neg,ns,0.000111389,0.000494797,0.225120578,0.822033799,pos,ns,0.085110326,-0.0000143,0.000017,-0.838891949,0.402176353,neg,ns,0.973798901,Macf1,Macf1_Exon,4,123432899,123432948,123432947,123432948,50,-,GAATTGATCAGAATGTCAGCAGCACTATTCAATATTTCCAGCAGGGAGCG,"Exon (Macf1-203/Macf1, exon 57 of 98)",4,123349633,123684360,334728,2,Macf1-203,251412,Gm12924-201;Macf1-203;Macf1-209;Macf1-215;Macf1-218;Macf1-217;Macf1-201;Macf1-205;Macf1-202;Macf1-206,Gm12924;Macf1;Macf1;Macf1;Macf1;Macf1;Macf1;Macf1;Macf1;Macf1,-2669;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,16,11426,ENSMUSG00000028649,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18881,cg22598794,0.0000899,0.0000172,5.217466786,0.000000333,gain,yes,-0.0000414,0.0000293,-1.416600606,0.15760382,neg,ns,0.018358057,0.008571823,2.141674764,0.032998829,pos,ns,1.481501476,-0.000649307,0.000294784,-2.202651349,0.028355035,neg,ns,0.253628968,Nfia,Nfia_Intron,4,97818811,97818860,97818859,97818860,50,+,TTGGCAGCCTAACAAATTCTATTCAGAGCACACAAAGAGATCCTGGAACG,"Intron (Nfia-208/Nfia, intron 2 of 3)",4,97772734,98000466,227733,1,Nfia-208,46077,Nfia-208;Nfia-202;Nfia-203;Nfia-205;Nfia-201;Nfia-204,Nfia;Nfia;Nfia;Nfia;Nfia;Nfia,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,44,18027,ENSMUSG00000028565,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
26695,cg09954563,-0.00000261,0.00000449,-0.581508777,0.561320192,loss,ns,0.0000108,0.00000762,1.416507927,0.157630912,pos,ns,0.001406194,0.002232919,0.62975606,0.529318066,pos,ns,0.276283283,-0.000112752,0.0000768,-1.468321055,0.143030965,neg,ns,0.896571323,Wnk3,Wnk3_threeUTR,X,151293921,151293970,151293969,151293970,50,-,TTTACTTGTCCTAGTCTCAAAAATCCTATTAGCAAGAAATCCTGGACTCG,3' UTR,20,151198078,151315186,117109,1,Wnk3-205,95843,Wnk3-205;Wnk3-206;Wnk3-204;Wnk3-201;Wnk3-203,Wnk3;Wnk3;Wnk3;Wnk3;Wnk3,0;0;0;0;-550,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,3,279561,ENSMUSG00000041245,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6369,cg23435453,-0.0000628,0.00000615,-10.20543954,2.84E-21,loss,yes,0.0000148,0.0000105,1.416437241,0.157651577,pos,ns,-0.006999337,0.003061776,-2.28603827,0.022926442,neg,ns,1.639663333,0.00011018,0.000105294,1.046400228,0.296191487,pos,ns,0.911383331,Pknox2,Pknox2_Intron,9,37034486,37034535,37034534,37034535,50,-,TTACCATTTTATTTGCAAAAAATAGCCTTCTGCTGGGTGGAAGCCAGCCG,"Intron (Pknox2-207/Pknox2, intron 1 of 10)",9,36890982,37083309,192328,2,Pknox2-207,48774,Pknox2-207;Pknox2-201;Pknox2-202;Pknox2-206;Pknox2-204;Pknox2-205;Pknox2-208;Pknox2-210;Pknox2-209;Pknox2-212;Pknox2-211,Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,47,208076,ENSMUSG00000035934,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10421,cg06528750,-0.00000923,0.00000593,-1.557962338,0.120262458,loss,ns,0.0000143,0.0000101,1.416143581,0.157737452,pos,ns,0.003230132,0.002950149,1.094904546,0.27440841,pos,ns,0.561602582,-0.000288762,0.000101455,-2.846196094,0.004719421,neg,ns,0.86699366,Npas3,Npas3_Intron,12,53493052,53493101,53493100,53493101,50,-,TAGCTTCAGGAGTGAGAACACTAATCTAAAGTGACATTTCTGTTCTGGCG,"Intron (Npas3-204/Npas3, intron 1 of 10)",12,53248157,54069532,821376,1,Npas3-204,244895,Npas3-204;Npas3-201;Npas3-202;Npas3-203,Npas3;Npas3;Npas3;Npas3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,83,103,27386,ENSMUSG00000021010,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13560,cg23043982,-0.00000457,0.00000154,-2.961564423,0.003297342,loss,ns,-0.00000371,0.00000262,-1.41607752,0.157756775,neg,ns,-0.001573545,0.000767622,-2.049894966,0.04121567,neg,ns,1.384937638,0.00000606,0.0000264,0.229407116,0.818703788,pos,ns,0.963526484,Gm10172,Gm10172_Intron,7,71349212,71349261,71349212,71349213,50,-,CGTTAATAACCAGAGTTCAAGGGCAAAGGATATAAACGGAGCAAATTACA,"Intron (Gm29328-206/Gm29328-206, intron 1 of 3)",7,71332363,71332921,559,2,Gm10172-201,-16340,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,31,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5234,cg15426572,-0.000000732,0.00000418,-0.175315692,0.860946036,loss,ns,-0.00001,0.0000071,-1.415997005,0.157780329,neg,ns,0.003193216,0.002078679,1.536175874,0.125515239,pos,ns,0.901303542,-0.000169338,0.0000715,-2.368835103,0.018456957,neg,ns,0.047604967,Fgf18,Fgf18_Promoter,11,33146292,33146341,33146292,33146293,50,-,CGAGTCTGAAAGCTGCTGAAGTAACAGATCAGATTTTAGCAAGTGCTTTC,Promoter (<=1kb),11,33117430,33146795,29366,2,Fgf18-202,454,Fgf18-202;Fgf18-201,Fgf18;Fgf18,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,4,6,14172,ENSMUSG00000057967,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
13455,cg11832973,-0.00000275,0.00000174,-1.579505351,0.115239978,loss,ns,-0.00000419,0.00000296,-1.415820096,0.15783209,neg,ns,-0.001004883,0.000866141,-1.160184256,0.246866518,neg,ns,0.607537809,0.0000442,0.0000298,1.48385707,0.138862849,pos,ns,0.947780372,Mink1,Mink1_Exon,11,70613235,70613284,70613283,70613284,50,+,GGGGTCTTCATGCACAAACGAGCTCAGAGGCTCAAGTTCCTGTGTGAGCG,"Exon (Mink1-201/Mink1, exon 32 of 33)",11,70562881,70614482,51602,1,Mink1-201,50354,4930544D05Rik-204;4930544D05Rik-201;4930544D05Rik-202;4930544D05Rik-203;Chrne-202;Chrne-201;Chrne-204;Chrne-203;Mink1-201;Mink1-202;Mink1-205;Mink1-203;Mink1-204;Mink1-208;Mink1-211;Mink1-209;Mink1-206,4930544D05Rik;4930544D05Rik;4930544D05Rik;4930544D05Rik;Chrne;Chrne;Chrne;Chrne;Mink1;Mink1;Mink1;Mink1;Mink1;Mink1;Mink1;Mink1;Mink1,-2564;-2610;-2613;-2626;5910;5932;2389;2413;0;0;0;0;0;0;0;3497;3184,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,7,50932,ENSMUSG00000020827,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16028,cg16955967,0.00000116,0.00000569,0.204167359,0.838356688,gain,ns,-0.0000137,0.00000967,-1.415819157,0.157832365,neg,ns,-0.003501086,0.002834425,-1.235201232,0.217690938,neg,ns,0.662159649,-0.000031,0.0000975,-0.318306203,0.750467011,neg,ns,0.89031712,Bnc2,Bnc2_Intergenic_downstream,4,84270060,84270109,84270060,84270061,50,+,CGTTCACATTACTGGAAGGTAATAAAGTGACAAGTATGTTATTAGAAAGA,Distal Intergenic,4,84275380,84291757,16378,2,Bnc2-218,21648,Bnc2-201,Bnc2,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,91,242509,ENSMUSG00000028487,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23434,cg07601141,0.00012936,0.0000114,11.31269733,4.53E-25,gain,yes,-0.0000275,0.0000194,-1.415719667,0.15786148,neg,ns,0.020082327,0.005691288,3.528608368,0.000481,pos,ns,3.317855198,-0.000598825,0.000195723,-3.059556736,0.002410241,neg,ns,0.105850304,Dpyd,Dpyd_Exon,3,118433860,118433909,118433860,118433861,50,+,CGGTGACGGGTATTCTTGGGTGGATAATACGGATTACGTTGTTATTGCTT,"Exon (Gm26871-202/Gm26871-202, exon 3 of 3)",3,118562129,119432924,870796,1,Dpyd-201,-128220,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,29,99586,ENSMUSG00000033308,mapped to different genes,3,118433691,118434190,500,*,500,37,0.624,0.795801609,0.074,1.85E-23,CpGisland,TRUE,U3,Pr-B
22412,cg23362864,-0.00000913,0.0000041,-2.226963661,0.026667707,loss,ns,0.00000986,0.00000697,1.415380019,0.157960907,pos,ns,0.003510848,0.002040725,1.720392418,0.086359041,pos,ns,1.063692191,-0.000053,0.0000702,-0.755690204,0.45040877,neg,ns,0.908314896,Dph6,Dph6_Intergenic_downstream,2,114438476,114438525,114438524,114438525,50,+,AACCCACAAATGTTCAACTGTCATAAAAGATCAGTGTTACTGAACTGCCG,Distal Intergenic,2,114518145,114545891,27747,2,Dph6-204,107366,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,10,66632,ENSMUSG00000057147,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13921,cg01524299,0.0000517,0.00000776,6.656909996,1.27E-10,gain,yes,-0.0000187,0.0000132,-1.415300725,0.157984126,neg,ns,-0.009841396,0.003862126,-2.548180634,0.011310823,neg,ns,1.946505811,0.00049407,0.000132818,3.719897588,0.000236544,pos,ns,0.857808469,Slc38a6,Slc38a6_Intergenic_downstream,12,73413432,73413481,73413480,73413481,50,-,ATGAATTTCATCAGCATGATTAAATACTTATTACATGAGTCAAACATACG,Distal Intergenic,12,73344367,73351865,7499,1,Slc38a6-207,69114,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,7,625098,ENSMUSG00000044712,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17249,cg21917516,-0.0000833,0.00000982,-8.488654226,8.78E-16,loss,yes,-0.0000236,0.0000167,-1.41491523,0.158097045,neg,ns,0.007345287,0.004886584,1.503153882,0.133817381,pos,ns,0.873487474,-0.0007494,0.000168049,-4.459410951,0.0000115,neg,ns,0.637920588,Gm5356,Gm5356_Intergenic_upstream,8,89308692,89308741,89308740,89308741,50,+,ATTTTACAGTTCCAAGCCAATCTCTCATTGGACAACATCCAGAAAGCCCG,Distal Intergenic,8,89186946,89187560,615,2,Gm5356-201,-121132,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,23,23,384862,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8678,cg07808440,0.00000458,0.00000245,1.872556574,0.062070794,gain,ns,-0.00000588,0.00000415,-1.414804457,0.158129503,neg,ns,-0.000404265,0.001216967,-0.332190845,0.739969654,neg,ns,0.13078609,0.00000642,0.0000419,0.153432991,0.878156658,pos,ns,0.945261961,Poll,Poll_Intergenic_downstream,19,45539098,45539147,45539146,45539147,50,-,TTTTAGAGCAGCGAGACTTTCATAATATCAAAACCTAAATTACACTTGCG,Distal Intergenic,19,45552275,45560531,8257,2,Poll-201,21433,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,16,56626,ENSMUSG00000025218,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13696,cg06236900,-0.00000083,0.000000395,-2.099367259,0.036592836,loss,ns,0.00000095,0.000000671,1.414662796,0.158171021,pos,ns,0.000293877,0.00019672,1.493882655,0.136223421,pos,ns,0.865748218,-0.0000182,0.00000677,-2.68963582,0.007540329,neg,ns,0.010396582,Rab8a,Rab8a_Exon,8,72161363,72161412,72161363,72161364,50,+,CGAAGACCTACGATTACCTGTTCAAGCTGCTGCTGATCGGGGACTCGGGG,Promoter (<=1kb),8,72161200,72183904,22705,1,Rab8a-201,163,Rab8a-201;Rab8a-203;Rab8a-202,Rab8a;Rab8a;Rab8a,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,5,17274,ENSMUSG00000003037,conserved gene and region,8,72161136,72161662,527,*,527,47,0.669829222,0.805967721,0.089184061,1.73E-33,CpGisland,TRUE,U1,Pr-A
7643,cg21261423,-0.0000436,0.00000988,-4.411576613,0.0000142,loss,ns,0.0000237,0.0000168,1.414644525,0.158176376,pos,ns,0.023411583,0.004915019,4.763274337,0.00000293,pos,ns,5.533123518,-0.000474154,0.000169027,-2.805196727,0.005346289,neg,ns,0.856204806,Zbtb20,Zbtb20_Intron,16,43547096,43547145,43547144,43547145,50,-,TTCAAATAAACATGTTAATGACCCTATTTTTCCATTTGGTAACTAGACCG,"Intron (Zbtb20-211/Zbtb20, intron 4 of 4)",16,42907542,43569781,662240,1,Zbtb20-211,639554,Zbtb20-211;Zbtb20-217;Zbtb20-204;Zbtb20-215;Zbtb20-201;Zbtb20-203;Zbtb20-214;Zbtb20-213;Zbtb20-219;Zbtb20-216;Zbtb20-208;Zbtb20-207;Zbtb20-220;Zbtb20-206;Zbtb20-221;Zbtb20-202;Zbtb20-205,Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,98,56490,ENSMUSG00000022708,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2230,cg02719399,-0.00000849,0.00000328,-2.591660489,0.010003441,loss,ns,-0.00000788,0.00000557,-1.414596451,0.158190467,neg,ns,-0.004052414,0.001631068,-2.484514968,0.013500401,neg,ns,1.869653345,0.0000681,0.0000561,1.213511001,0.225858288,pos,ns,0.937644168,Gm30341,Gm30341_Intergenic_upstream,3,18714229,18714278,18714277,18714278,50,+,TTTCTTTTCCTGTCTTCACACTAACAACTGTTAAAGTGAATCAACACACG,Distal Intergenic,3,18753077,18753365,289,1,Gm30341-201,-38799,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,17,23,102632201,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5166,cg13592539,0.0000631,0.0000108,5.823687373,1.44E-08,gain,yes,0.000026,0.0000184,1.414595105,0.158190862,pos,ns,0.004955214,0.005393999,0.918653088,0.358991267,pos,ns,0.444916116,0.000106932,0.000185499,0.576455896,0.564725379,pos,ns,0.24833229,Prrxl1,Prrxl1_Promoter,14,32598386,32598435,32598434,32598435,50,+,TAGTCTGTCCAAGAAGCCATCGTCCCAAAATAAAATCAGCAGTCTAGACG,Promoter (<=1kb),14,32599407,32649204,49798,1,Prrxl1-203,-972,Prrxl1-203;Prrxl1-204;Prrxl1-202;Prrxl1-201;Prrxl1-205,Prrxl1;Prrxl1;Prrxl1;Prrxl1;Prrxl1,0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,14,23,107751,ENSMUSG00000041730,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
13563,cg23593240,0.0000219,0.0000137,1.601081688,0.110377346,gain,ns,0.0000329,0.0000232,1.414585629,0.158193639,pos,ns,0.0012501,0.006804224,0.183724131,0.854349991,pos,ns,0.068364181,-0.000156026,0.000233997,-0.66678881,0.50540301,neg,ns,0.65988525,Gfra2,Gfra2_Intergenic_downstream,14,71364827,71364876,71364827,71364828,50,+,CGTAAATGTCATCAGTCTTGTCAAAGCCAGACACAGGAGAAAATAACAGG,Distal Intergenic,14,70941886,70979823,37938,1,Gfra2-202,422941,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,14586,ENSMUSG00000022103,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12025,cg13606788,-0.00000122,0.00000176,-0.689811739,0.490828643,loss,ns,0.00000423,0.00000299,1.414583961,0.158194129,pos,ns,0.00207906,0.000876699,2.371464365,0.018328548,pos,ns,1.736871941,-0.0000624,0.0000301,-2.070343818,0.039247834,neg,ns,0.961512934,Ncor1,Ncor1_threeUTR,11,62403344,62403393,62403392,62403393,50,+,ATCCGTGGCACTTCTACTTTGCAATGGCAGATGTGGCTTGGTGGGGGACG,3' UTR,11,62316426,62438515,122090,2,Ncor1-204,35122,Ncor1-204;Ncor1-201;Ncor1-205;Ncor1-206;Ncor1-208;Ncor1-212;Ncor1-207;Ncor1-203,Ncor1;Ncor1;Ncor1;Ncor1;Ncor1;Ncor1;Ncor1;Ncor1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,10,20185,ENSMUSG00000018501,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16390,cg15116007,0.0000184,0.0000167,1.105612167,0.269751721,gain,ns,-0.0000401,0.0000283,-1.414188151,0.158310186,neg,ns,0.0000511,0.008301221,0.006154067,0.995093754,pos,ns,0.002136,-0.000385144,0.000285478,-1.34911689,0.178283991,neg,ns,0.704850729,Dand5,Dand5_Intergenic_downstream,8,84814551,84814600,84814551,84814552,50,-,CGGGCTTTAATACAGATGCCAAACTCATAATTGTAACTGAGGGTGACAGG,Distal Intergenic,8,84815404,84822823,7420,2,Dand5-201,8272,Dand5-201;Dand5-202,Dand5;Dand5,8223;17809,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,3,23863,ENSMUSG00000053226,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
22253,cg14163877,-0.000000073,0.00000461,-0.015817185,0.987390413,loss,ns,0.0000111,0.00000784,1.414171484,0.158315075,pos,ns,0.003785298,0.002296461,1.648317614,0.10030058,pos,ns,0.998696553,-0.000106137,0.000079,-1.343933659,0.179952602,neg,ns,0.886165825,Cav3,Cav3_Exon,6,112472194,112472243,112472242,112472243,50,+,TGGAAGGTGAGCTACACCACCTTCACTGTCTCCAAGTACTGGTGCTACCG,"Exon (Cav3-201/Cav3, exon 2 of 2)",6,112459505,112472872,13368,1,Cav3-201,12689,Cav3-201;Oxtr-201;Oxtr-202,Cav3;Oxtr;Oxtr,0;0;16151,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,12391,ENSMUSG00000062694,conserved gene and region,6,112472151,112472243,93,*,93,8,0.59139785,0.984126984,0.086021505,0.00000681,CpGisland,TRUE,U11,Tr-P
2308,cg00096766,-0.000016,0.00000402,-3.98129557,0.0000854,loss,ns,0.00000965,0.00000682,1.413890291,0.158397567,pos,ns,0.0000711,0.001998997,0.035575372,0.971643842,pos,ns,0.012492897,0.0000778,0.0000687,1.132225798,0.258414526,pos,ns,0.966743837,Meis1,Meis1_Intron,11,19009494,19009543,19009542,19009543,50,+,CTTCATTTTGGAGGCAATTAAAGTGTTGATTTCATTCATGCCCCTAAGCG,"Intron (Gm16140-201/Gm16140-201, intron 1 of 1)",11,18879817,19018985,139169,2,Meis1-206,9442,Meis1-206;Meis1-202;Meis1-209;Meis1-201;Meis1-203;Meis1-208;Meis1-207;Meis1-204;Meis1-205,Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,88,17268,ENSMUSG00000020160,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17391,cg09203241,-0.00000162,0.00000172,-0.945834733,0.344969525,loss,ns,0.00000412,0.00000292,1.413679516,0.158459422,pos,ns,0.001285573,0.000854567,1.504356087,0.133507823,pos,ns,0.874493286,-0.0000318,0.0000294,-1.080876554,0.280592174,neg,ns,0.966095587,Ubap2l,Ubap2l_Exon,3,90009197,90009246,90009245,90009246,50,-,AGGCAGCGCCGGGTTCAGGAATGTCTGCTGCGTGGTATGGTGAGTCTGCG,"Exon (Ubap2l-215/Ubap2l, exon 23 of 27)",3,90000140,90052455,52316,2,Ubap2l-215,43209,Ubap2l-215;Ubap2l-201;Ubap2l-202;Ubap2l-208;Ubap2l-203;Ubap2l-211;Ubap2l-204;Ubap2l-220;Ubap2l-207,Ubap2l;Ubap2l;Ubap2l;Ubap2l;Ubap2l;Ubap2l;Ubap2l;Ubap2l;Ubap2l,0;0;0;0;0;0;0;0;7047,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,15,74383,ENSMUSG00000042520,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20864,cg21378776,-0.000000757,0.00000187,-0.4056193,0.685302153,loss,ns,0.00000448,0.00000317,1.413662322,0.158464468,pos,ns,-0.000577412,0.000929023,-0.621525871,0.534710456,neg,ns,0.271881323,0.000000314,0.0000319,0.009843235,0.992152693,pos,ns,0.953985102,Ctcf,Ctcf_Exon,8,105671377,105671426,105671425,105671426,50,+,GAAAATGTGGCCAAATTTCACTGTCCCCACTGTGACACAGTCATAGCCCG,"Exon (Ctcf-204/Ctcf, exon 5 of 10)",8,105636568,105681647,45080,1,Ctcf-204,34809,Ctcf-204;Ctcf-201;Ctcf-205;Ctcf-206,Ctcf;Ctcf;Ctcf;Ctcf,0;0;-4585;-4585,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,8,13018,ENSMUSG00000005698,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14010,cg11140405,-0.00000308,0.00000778,-0.396262729,0.692183832,loss,ns,0.0000187,0.0000132,1.413576672,0.158489609,pos,ns,0.007995799,0.00387261,2.064705698,0.03978223,pos,ns,1.400310879,-0.000265937,0.000133179,-1.996844124,0.046716161,neg,ns,0.430300594,Gm15387,Gm15387_Intergenic_upstream,15,74204521,74204570,74204521,74204522,50,-,CGTGATGAGCGCCTGATCAAAATTCTTATGCATTGTTGACAGGGGAGGCA,Distal Intergenic,15,74093686,74094333,648,2,Gm15387-201,-110237,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,100041307,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26783,cg02005942,-0.00000584,0.00000204,-2.867399703,0.004422161,loss,ns,-0.00000489,0.00000346,-1.41336962,0.158550399,neg,ns,-0.000281672,0.001013133,-0.278021081,0.781181512,neg,ns,0.107248044,-0.0000156,0.0000348,-0.446911198,0.655251243,neg,ns,0.960772258,Kdm5c,Kdm5c_Exon,X,152240149,152240198,152240149,152240150,50,+,CGCATTGTTTATCCCTATGAAATGTACCAGTCTGGAGCCAACCTTGTGGT,"Exon (Kdm5c-202/Kdm5c, exon 4 of 26)",20,152233020,152273768,40749,1,Kdm5c-202,7129,Kdm5c-202;Kdm5c-203;Kdm5c-204;Kdm5c-201,Kdm5c;Kdm5c;Kdm5c;Kdm5c,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,7,20591,ENSMUSG00000025332,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7289,cg06848063,-0.0000523,0.00000857,-6.099124386,3.17E-09,loss,yes,0.0000206,0.0000146,1.413348818,0.158556507,pos,ns,0.00126808,0.004265683,0.297274694,0.766455902,pos,ns,0.115512827,0.000220865,0.000146696,1.505594352,0.133189562,pos,ns,0.211871991,Hivep1,Hivep1_Intron,13,42103078,42103127,42103126,42103127,50,-,TGGCCTCCTTTCATTTGCGTAAGAGATGGACTGGCTTCTCTGTGGCTGCG,"Intron (Hivep1-201/Hivep1, intron 2 of 8)",13,42052021,42185026,133006,1,Hivep1-201,51057,Hivep1-201;Hivep1-202,Hivep1;Hivep1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,6,110521,ENSMUSG00000021366,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
27793,cg01783645,-0.0000091,0.00000327,-2.785409528,0.005675079,loss,ns,0.00000784,0.00000555,1.413339541,0.158559231,pos,ns,-0.0000879,0.001626115,-0.05407336,0.956911547,neg,ns,0.019128205,-0.0000714,0.0000559,-1.276633947,0.202687007,neg,ns,0.914169034,Spata17,Spata17_Intron,1,187183626,187183675,187183674,187183675,50,-,CTTTTAGCCAAACCTCACAGAAACATAAAAGGAATTCATATTTCAAGACG,"Intron (Spata17-205/Spata17, intron 3 of 10)",1,187044648,187215465,170818,2,Spata17-205,31790,Spata17-205;Spata17-201;Spata17-206;Spata17-202,Spata17;Spata17;Spata17;Spata17,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,6,74717,ENSMUSG00000026611,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5616,cg20001705,-0.0000879,0.0000194,-4.518183301,0.00000888,loss,ns,0.0000467,0.000033,1.413271131,0.158579321,pos,ns,-0.019578229,0.009678858,-2.022782952,0.043953694,neg,ns,1.357004622,0.000451794,0.000332855,1.357330698,0.175663497,pos,ns,0.712317593,Pbx3,Pbx3_Intron,2,34359854,34359903,34359902,34359903,50,-,CCATAAAAGCTCATTTGCATAACTTATGTGTGAAAAACAATTATGAGCCG,"Intron (Pbx3-202/Pbx3, intron 2 of 7)",2,34171457,34372038,200582,2,Pbx3-202,12135,Pbx3-202;Pbx3-201;Pbx3-206;Pbx3-207;Pbx3-209;Pbx3-204;Pbx3-205;Pbx3-203,Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,82,18516,ENSMUSG00000038718,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20463,cg02106684,0.0000893,0.00000769,11.61244814,3.98E-26,gain,yes,-0.0000185,0.0000131,-1.413187464,0.158603893,neg,ns,0.008031752,0.00382846,2.097906811,0.036722663,pos,ns,1.435065829,-0.0000349,0.00013166,-0.265436252,0.790849838,neg,ns,0.048760876,Hoxc4,Hoxc4_Intergenic_downstream,15,103061674,103061723,103061674,103061675,50,-,CGCAGCCGCCTTTGTACGAGTGATTTATGACTTCAGTCTTGGTTCACCAA,Distal Intergenic,15,103034395,103036852,2458,1,Hoxc4-201,27328,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,32,91,15423,ENSMUSG00000075394,mapped to different genes,15,103061537,103061809,273,*,273,19,0.586080586,0.8125,0.06959707,7.69E-12,CpGisland,TRUE,U13,Hc-P
6376,cg02891649,-0.00000552,0.0000118,-0.468604386,0.639681781,loss,ns,-0.0000283,0.00002,-1.41311537,0.158625069,neg,ns,-0.01235068,0.005864655,-2.105951884,0.036012361,neg,ns,1.443548407,0.0000389,0.000201685,0.192715215,0.847308197,pos,ns,0.469964271,Dgki,Dgki_Intron,6,37058332,37058381,37058380,37058381,50,+,AGAATCCCAAATTCTCTGAGGGGCTCCAGTCTCCCGCCCAACCAGGTTCG,"Intron (Dgki-203/Dgki, intron 8 of 33)",6,36846022,37299974,453953,2,Dgki-203,241593,Dgki-203;Dgki-202;Dgki-205;Dgki-208;Dgki-201;Dgki-207,Dgki;Dgki;Dgki;Dgki;Dgki;Dgki,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,7,320127,ENSMUSG00000038665,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8004,cg22192255,0.0000175,0.00000445,3.945090335,0.0000987,gain,ns,0.0000107,0.00000756,1.413076118,0.158636599,pos,ns,0.009760469,0.002213437,4.409643806,0.0000143,pos,ns,4.84478727,-0.000106463,0.0000761,-1.398622093,0.162925957,neg,ns,0.091988463,Pax2,Pax2_Intergenic_upstream,19,44676825,44676874,44676873,44676874,50,+,TGCTTTTGTTGGCAGGCCTCCGCAATTATGCATCTCATTATGGGCGGCCG,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-79171,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
25381,cg03173358,0.0000567,0.00000837,6.770841517,6.42E-11,gain,yes,-0.0000201,0.0000142,-1.412950767,0.158673426,neg,ns,0.010886674,0.004167475,2.612294822,0.009431691,pos,ns,2.025410455,-0.000629107,0.000143319,-4.389554548,0.0000156,neg,ns,0.055408472,Id3,Id3_Promoter,4,136140614,136140663,136140614,136140615,50,-,CGGATTCCTCAACAAAAAATAGGATTGTGAGAAAAGTTCTGAAACAAAAA,Promoter (2-3kb),4,136143497,136145392,1896,1,Id3-201,-2883,Id3-201;Id3-203;Id3-202,Id3;Id3;Id3,-2834;-3201;-4311,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,9,9,15903,ENSMUSG00000007872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6984,cg25693997,-0.0000119,0.00000513,-2.32715705,0.020600722,loss,ns,-0.0000123,0.00000872,-1.412937707,0.158677263,neg,ns,-0.006242802,0.00255438,-2.443959719,0.015084202,neg,ns,1.821477656,0.000066,0.0000878,0.751518012,0.452911116,pos,ns,0.084289267,Cdk19,Cdk19_fiveUTR,10,40349582,40349631,40349630,40349631,50,-,GGGAAGCAGACAATGGATTATGATTTCAAGGCGAAGCTGGCGGCGGAGCG,5' UTR,10,40339564,40480868,141305,1,Cdk19-205,10018,Cdk19-205;Cdk19-201;Cdk19-202;Cdk19-204;Cdk19-203,Cdk19;Cdk19;Cdk19;Cdk19;Cdk19,0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,4,78334,ENSMUSG00000038481,conserved gene and region,10,40349613,40350160,548,*,548,66,0.708029197,1.003663004,0.120437956,3.79E-56,CpGisland,TRUE,U1,Pr-A
11606,cg02420850,0.0000153,0.00000421,3.646099728,0.00031216,gain,ns,-0.0000101,0.00000715,-1.412875427,0.158695562,neg,ns,0.002897415,0.00209475,1.383179632,0.167605147,pos,ns,0.775712649,-0.000157406,0.000072,-2.185027866,0.029635219,neg,ns,0.070521611,Emx2,Emx2_fiveUTR,19,59458656,59458705,59458656,59458657,50,+,CGAGTAATAGCGACCAATCATCAAGCCATTTACCAGGCTTCGGAGGAAGC,Promoter (<=1kb),19,59458372,59465357,6986,1,Emx2-201,284,Emx2-201;Emx2-202;Emx2-203,Emx2;Emx2;Emx2,0;-814;-4097,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,23,13797,ENSMUSG00000043969,mapped to different genes,19,59458392,59458858,467,*,467,34,0.597430407,0.819721218,0.072805139,2.25E-21,CpGisland,TRUE,U13,Hc-P
22425,cg04721809,-0.000109288,0.0000157,-6.954095916,2.11E-11,loss,yes,0.0000377,0.0000267,1.412541744,0.158793635,pos,ns,0.022427488,0.00782185,2.867286966,0.004423695,pos,ns,2.354214805,-0.001486433,0.000268993,-5.525923555,6.95E-08,neg,yes,0.760504031,Mvk,Mvk_Intergenic_downstream,5,114475316,114475365,114475316,114475317,50,+,CGTTGGTTCCACTTTATATTTGTCTGTGTGATTAATAAAGGCAGCTAATT,Distal Intergenic,5,114452420,114460572,8153,1,Mvk-207,22896,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,7,17855,ENSMUSG00000041939,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1678,cg18635807,-0.0000049,0.00000626,-0.782224014,0.434680002,loss,ns,-0.000015,0.0000106,-1.412237715,0.158883033,neg,ns,-0.009067775,0.003116641,-2.909470578,0.003882267,neg,ns,2.410914549,0.000226906,0.000107181,2.117032074,0.035053378,pos,ns,0.889886399,Eya1,Eya1_Exon,1,14302773,14302822,14302773,14302774,50,+,CGGTGCCATTGGGAGTCATGGAATTACTATTTATATGAGAGTTACCGAGT,"Exon (Eya1-201/Eya1, exon 3 of 18)",1,14168954,14310200,141247,2,Eya1-201,7378,Eya1-201;Eya1-203;Eya1-202;Eya1-209;Eya1-207;Eya1-205;Eya1-206;Eya1-204,Eya1;Eya1;Eya1;Eya1;Eya1;Eya1;Eya1;Eya1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,4,14048,ENSMUSG00000025932,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
241,cg01671869,0.00000762,0.00000436,1.749689086,0.081161458,gain,ns,-0.0000105,0.0000074,-1.412214252,0.158889933,neg,ns,-0.000201723,0.002168935,-0.093005742,0.925959077,neg,ns,0.033408207,-0.0000326,0.0000746,-0.436560943,0.662733694,neg,ns,0.913838615,Gm21992,Gm21992_Exon,19,4802660,4802709,4802708,4802709,50,+,CCCCCTGGGACATGGACAGGTAGGCTGCAGACGGCTGACCTGCCCCATCG,"Exon (Rbm14-201/Rbm14, exon 2 of 3)",19,4742913,4811612,68700,2,Gm21992-203,8903,Gm21992-203;Gm21992-206;Gm21992-204;Gm21992-201;Gm21992-205;Gm21992-202;Rbm14-201;Rbm14-202;Rbm14-203,Gm21992;Gm21992;Gm21992;Gm21992;Gm21992;Gm21992;Rbm14;Rbm14;Rbm14,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,27,48,102902673,ENSMUSG00000096370,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3252,cg16671190,-0.0000164,0.00000587,-2.793675968,0.005535554,loss,ns,0.0000141,0.00000997,1.412190131,0.158897028,pos,ns,-0.001188869,0.002921029,-0.407003411,0.684286358,neg,ns,0.164762118,-0.0000736,0.000100454,-0.733168392,0.464009779,neg,ns,0.821922531,Kcnma1,Kcnma1_threeUTR,14,23363892,23363941,23363892,23363893,50,+,CGAAGTATCATCAATATTATTCTGATTGGCTGACAGGATAACGCACATGT,3' UTR,14,23289431,23803304,513874,2,Kcnma1-207,439363,Kcnma1-207;Kcnma1-210;Kcnma1-205;Kcnma1-201;Kcnma1-208;Kcnma1-209;Kcnma1-212;Kcnma1-204;Kcnma1-202;Kcnma1-211;Kcnma1-229;Kcnma1-234;Kcnma1-223;Kcnma1-214;Kcnma1-216;Kcnma1-219;Kcnma1-220;Kcnma1-224;Kcnma1-233;Kcnma1-236;Kcnma1-237;Kcnma1-213;Kcnma1-228;Kcnma1-203;Kcnma1-206;Kcnma1-221;Kcnma1-225;Kcnma1-226;Kcnma1-230;Kcnma1-235,Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,13,41,16531,ENSMUSG00000063142,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26641,cg16713026,0.0000161,0.00000238,6.756086038,7.02E-11,gain,yes,-0.00000571,0.00000404,-1.412114952,0.158919141,neg,ns,-0.000209676,0.001184237,-0.177055431,0.859580473,neg,ns,0.065713459,-0.00000252,0.0000407,-0.061791534,0.950768665,neg,ns,0.939197347,Pex14,Pex14_Intron,4,149061890,149061939,149061890,149061891,50,-,CGCGCTGTGGGAATCTACAGATTTAAACAAATAACACTCACAGCAGGGGG,"Intron (Pex14-201/Pex14, intron 2 of 8)",4,148960535,149099876,139342,2,Pex14-201,37937,Pex14-201;Pex14-202;Pex14-205;Pex14-203;Pex14-204,Pex14;Pex14;Pex14;Pex14;Pex14,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,41,48,56273,ENSMUSG00000028975,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23121,cg04060154,0.000164267,0.0000134,12.25923687,1.94E-28,gain,yes,-0.0000321,0.0000228,-1.412108723,0.158920973,neg,ns,0.009544723,0.006669047,1.431197399,0.15338097,pos,ns,0.814228519,-0.0000916,0.000229348,-0.399285521,0.689957767,neg,ns,0.393830323,Rnf220,Rnf220_Intron,4,117312693,117312742,117312741,117312742,50,-,AGCTGAGAGATTCTTCACCAAAATGCCAGGCGGCCAGAGGTCTGACAGCG,"Intron (Rnf220-201/Rnf220, intron 2 of 14)",4,117271463,117497052,225590,2,Rnf220-201,184310,Rnf220-201;Rnf220-202;Rnf220-207,Rnf220;Rnf220;Rnf220,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,4,117312723,117312844,122,*,122,9,0.614754098,0.787661406,0.073770492,0.0000048,CpGisland,TRUE,NA,NRS
10745,cg01863808,0.00000147,0.00000173,0.852934269,0.394354272,gain,ns,0.00000415,0.00000294,1.412087375,0.158927253,pos,ns,0.001268185,0.000860154,1.474370208,0.141396728,pos,ns,0.849560639,-0.0000417,0.0000296,-1.409723189,0.159623877,neg,ns,0.029275202,Zfhx2,Zfhx2_fiveUTR,14,55091994,55092043,55092042,55092043,50,+,ATCGATGCACTTACACCTCAGCTGGAAGCAGGGACGGGAGTCGAACCGCG,Promoter (<=1kb),14,55089572,55092042,2471,2,Zfhx2-204,0,Thtpa-201;Zfhx2-201;Zfhx2-204,Thtpa;Zfhx2;Zfhx2,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,8,239102,ENSMUSG00000040721,mapped to different genes,14,55091989,55092102,114,*,114,12,0.675438597,0.970212766,0.105263158,9.79E-10,CpGisland,TRUE,U1,Pr-A
10354,cg04989483,-0.0000125,0.00000313,-3.986067406,0.0000838,loss,ns,0.00000752,0.00000532,1.41207475,0.158930967,pos,ns,-0.000641563,0.001559327,-0.411435858,0.681037266,neg,ns,0.166829123,-0.000051,0.0000536,-0.950422006,0.342638247,neg,ns,0.944889445,Npas3,Npas3_Intergenic_upstream,12,53173620,53173669,53173668,53173669,50,+,CTCATCTGATATAATGACATTTACAACAACATGTTTGAGGTGATAAACCG,Distal Intergenic,12,53248157,54069532,821376,1,Npas3-204,-74488,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,103,27386,ENSMUSG00000021010,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18246,cg05907933,0.0000178,0.00000372,4.781868525,0.00000269,gain,ns,0.00000892,0.00000632,1.412014326,0.158948743,pos,ns,0.008782709,0.001850692,4.745634218,0.00000318,pos,ns,5.497791175,-0.000286737,0.0000636,-4.505243806,0.0000094,neg,ns,0.085299971,Ap3b1,Ap3b1_Intergenic_downstream,13,94595799,94595848,94595847,94595848,50,+,ATGGATGAGATTTAAATGTGCATCTCATTTCCCCAGCACGGAGCATGCCG,Distal Intergenic,13,94542303,94547867,5565,1,Ap3b1-202,53496,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,33,55,11774,ENSMUSG00000021686,mapped to different genes,13,94595837,94596306,470,*,470,35,0.640425532,0.726333451,0.074468085,2.54E-22,CpGisland,TRUE,U13,Hc-P
203,cg15723244,0.000125807,0.0000152,8.279142689,3.75E-15,gain,yes,-0.0000364,0.0000258,-1.41182332,0.159004944,neg,ns,0.027432702,0.00756301,3.627220087,0.000334875,pos,ns,3.475117046,-0.000834868,0.000260091,-3.209905606,0.001466948,neg,ns,0.077363546,Fzd1,Fzd1_Exon,5,4757173,4757222,4757221,4757222,50,-,CGTGTGGCCCAGCAGGTTGGGCATGATGGTCTGGTTGTACGCGATGTCCG,Promoter (<=1kb),5,4753839,4758035,4197,2,Fzd1-201,813,Fzd1-201,Fzd1,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,5,14362,ENSMUSG00000044674,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6494,cg25555481,-0.00000691,0.00000422,-1.634974734,0.10306932,loss,ns,-0.0000101,0.00000718,-1.411806086,0.159010015,neg,ns,-0.003313826,0.002102342,-1.576254684,0.115987033,neg,ns,0.935590561,0.000107424,0.0000723,1.485816585,0.13834388,pos,ns,0.900484494,Zfp536,Zfp536_Intron,7,37515092,37515141,37515140,37515141,50,+,GGGATTTATTTCCTTACTCCAGAGCAACATAACACCATCCGGCTGATGCG,"Intron (Zfp536-211/Zfp536, intron 1 of 3)",7,37318024,37568390,250367,2,Zfp536-211,53249,Zfp536-211;Zfp536-202;Zfp536-201;Zfp536-203;Zfp536-206,Zfp536;Zfp536;Zfp536;Zfp536;Zfp536,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,73,112,243937,ENSMUSG00000043456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16531,cg07792139,-0.00000533,0.00000355,-1.502048376,0.134102532,loss,ns,0.00000851,0.00000603,1.41179944,0.159011971,pos,ns,0.005737523,0.001766223,3.248470115,0.001287579,pos,ns,2.890226268,-0.000198199,0.0000607,-3.263065762,0.001225168,neg,ns,0.917317751,Bcas3,Bcas3_Intron,11,85392588,85392637,85392636,85392637,50,+,TGTGAACAAATCATTCTTTGTTCTCCTTATTGTGCCTCCAAACTGGTACG,"Intron (Bcas3-204/Bcas3, intron 6 of 15)",11,85353167,85510991,157825,1,Bcas3-204,39421,Bcas3-204;Bcas3-205;Bcas3-206;Bcas3-201;Bcas3-202,Bcas3;Bcas3;Bcas3;Bcas3;Bcas3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,24,192197,ENSMUSG00000059439,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9061,cg13405121,0.000000762,0.00000305,0.249297101,0.803296071,gain,ns,0.00000733,0.00000519,1.411544629,0.159086972,pos,ns,0.002951717,0.001520461,1.941329967,0.053124253,pos,ns,1.27470716,-0.0000215,0.0000523,-0.411649688,0.680880673,neg,ns,0.928946954,Gm8863,Gm8863_Intergenic_upstream,9,46751203,46751252,46751203,46751204,50,+,CGCACTCTGGAAATGTACAGTCCGATCAGCAAACAGATTAGTTTTAAGTG,Distal Intergenic,9,46713233,46714158,926,2,Gm8863-201,-37045,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,20,667890,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12927,cg14732096,-0.00000704,0.00000235,-2.996146287,0.002954841,loss,ns,0.00000563,0.00000399,1.411485119,0.159104492,pos,ns,0.003213477,0.001169159,2.748537957,0.006337034,pos,ns,2.198113947,-0.000104607,0.0000402,-2.601687331,0.009721845,neg,ns,0.065057846,Arid5b,Arid5b_Promoter,10,68280022,68280071,68280070,68280071,50,-,AAACTTAAGAGCGACAGAACAAGGAACAGGCAGAGACTGCAAAGCCCTCG,Promoter (1-2kb),10,68092520,68278740,186221,2,Arid5b-204,-1331,Arid5b-204;Arid5b-201;Arid5b-202,Arid5b;Arid5b;Arid5b,0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,16,33,71371,ENSMUSG00000019947,conserved gene and region,10,68280070,68280167,98,*,98,9,0.612244898,1.055023923,0.091836735,0.000000773,CpGisland,TRUE,U1,Pr-A
25732,cg16455800,-0.0000459,0.0000119,-3.846323508,0.000145556,loss,ns,0.0000286,0.0000203,1.411386234,0.159133608,pos,ns,-0.000273399,0.005933708,-0.046075556,0.963279696,neg,ns,0.016247594,0.0000117,0.00020406,0.057359004,0.954296173,pos,ns,0.719147002,Il1rapl2,Il1rapl2_Exon,X,138846024,138846073,138846024,138846025,50,+,CGAACTGGAAAGCAGACTCCATAACATGCTAGTCAGTGGAGAAATCAAAG,"Exon (Il1rapl2-202/Il1rapl2, exon 11 of 11)",20,137570608,138846946,1276339,1,Il1rapl2-202,1275416,Il1rapl2-202;Il1rapl2-201,Il1rapl2;Il1rapl2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,60367,ENSMUSG00000059203,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3612,cg26694589,8.86E-08,0.00000231,0.038311295,0.969464145,gain,ns,0.00000555,0.00000393,1.411261738,0.15917027,pos,ns,0.002108044,0.001151493,1.830704571,0.068104493,pos,ns,1.166824236,-0.0000719,0.0000396,-1.81650368,0.070258824,neg,ns,0.943755462,Rps24,Rps24_Intron,14,24765575,24765624,24765575,24765576,50,+,CGCTTTACCAAGTCATTCATTAAAAGTAAATTAATGAGGGGGACAGCATT,"Intron (4930428N03Rik-205/4930428N03Rik-205, intron 3 of 5)",14,24491149,24491989,841,1,Rps24-209,274426,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,12,20088,ENSMUSG00000025290,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9212,cg21240872,-0.00000507,0.00000527,-0.960965536,0.337318428,loss,ns,-0.0000126,0.00000896,-1.410893813,0.159278655,neg,ns,-0.00053404,0.002624779,-0.203460848,0.838908333,neg,ns,0.076285491,0.0000594,0.0000903,0.65764801,0.511252355,pos,ns,0.91626427,Cadm1,Cadm1_Intron,9,47610577,47610626,47610625,47610626,50,+,CTTGAAGAATTGCTTTCCCAGGTAATCAGCTCTGCTCATTTAGGATGTCG,"Intron (Cadm1-204/Cadm1, intron 1 of 9)",9,47530173,47853385,323213,1,Cadm1-204,80404,Cadm1-204;Cadm1-209;Cadm1-206;Cadm1-202;Cadm1-203;Cadm1-207;Cadm1-205;Cadm1-211;Cadm1-210;Cadm1-208;Cadm1-201,Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,77,54725,ENSMUSG00000032076,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18429,cg01422094,0.000125431,0.0000154,8.130108348,1.04E-14,gain,yes,0.000037,0.0000262,1.410840445,0.159294381,pos,ns,0.034068177,0.007678631,4.436751694,0.0000127,pos,ns,4.896053268,-0.000834,0.000264067,-3.158282661,0.001743361,neg,ns,0.438183193,Paqr9,Paqr9_Exon,9,95560787,95560836,95560787,95560788,50,-,CGCCGCTACTTCTGGCTGGTGGTGGCCGCCTTCTTCAACGTGAGCAAGAT,"Exon (Paqr9-201/Paqr9, exon 1 of 1)",9,95559657,95568023,8367,1,Paqr9-201,1130,Paqr9-201,Paqr9,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,75552,ENSMUSG00000064225,mapped to different genes,9,95560744,95560865,122,*,122,11,0.62295082,0.953125,0.090163934,3.27E-08,CpGisland,TRUE,NA,NRS
18718,cg25487430,-0.00000822,0.00000243,-3.376133424,0.000828738,loss,ns,-0.00000583,0.00000414,-1.410793705,0.159308155,neg,ns,-0.001901771,0.001211442,-1.56984156,0.117472082,neg,ns,0.930065335,-0.0000124,0.0000417,-0.297540673,0.766253054,neg,ns,0.969612595,Tenm4,Tenm4_Exon,7,96895430,96895479,96895430,96895431,50,+,CGCTACTCCTATGAGTATGATGCTGACGGCCAGCTGCAGACAGTCTCCAT,"Exon (Tenm4-201/Tenm4, exon 31 of 33)",7,96171246,96908569,737324,1,Tenm4-201,724184,Tenm4-201;Tenm4-203;Tenm4-202,Tenm4;Tenm4;Tenm4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,17,26,23966,ENSMUSG00000048078,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21975,cg27533597,-0.000000416,0.00000161,-0.258535602,0.796165145,loss,ns,-0.00000386,0.00000274,-1.41070761,0.159333529,neg,ns,-0.001040894,0.000801698,-1.29836271,0.195127789,neg,ns,0.709680876,-0.0000028,0.0000276,-0.101589088,0.919148517,neg,ns,0.959015212,Dennd5a,Dennd5a_Exon,7,109933612,109933661,109933612,109933613,50,-,CGCTGTGAGTAGAGCAGGATTTGAAACTCCAGAAGGGCACAAGTAAAAAG,"Exon (Dennd5a-202/Dennd5a, exon 3 of 22)",7,109893780,109960400,66621,2,Dennd5a-202,26739,Dennd5a-202;Dennd5a-201;Dennd5a-206,Dennd5a;Dennd5a;Dennd5a,0;0;26662,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,19347,ENSMUSG00000035901,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8708,cg26691307,0.0000494,0.00000587,8.422777675,1.39E-15,gain,yes,-0.0000141,0.00000997,-1.410655578,0.159348866,neg,ns,0.008773066,0.002919693,3.004790936,0.00287448,pos,ns,2.541440746,-0.000253428,0.000100408,-2.523985965,0.012102534,neg,ns,0.098932053,Kcnn2,Kcnn2_Exon,18,45560435,45560484,45560435,45560436,50,+,CGGGCACGGCAGCAGCAGTGGCACCAAGTCCAGCAAAAAGAAAAACCAGA,"Exon (Kcnn2-205/Kcnn2, exon 4 of 11)",18,45269005,45685883,416879,1,Kcnn2-205,291430,Gm31907-202;Kcnn2-205;Kcnn2-201;Kcnn2-207;Kcnn2-206;Kcnn2-202;Kcnn2-208;Kcnn2-203,Gm31907;Kcnn2;Kcnn2;Kcnn2;Kcnn2;Kcnn2;Kcnn2;Kcnn2,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,8,140492,ENSMUSG00000054477,conserved gene but different region,18,45559636,45560643,1008,*,1008,101,0.691468254,0.851522248,0.100198413,1.25E-76,CpGisland,TRUE,U3,Pr-B
4091,cg05730460,0.000151616,0.0000156,9.719794284,1.15E-19,gain,yes,-0.0000374,0.0000265,-1.41044212,0.159411794,neg,ns,0.001538402,0.007763634,0.198154881,0.843053768,pos,ns,0.074144726,0.000555208,0.000266991,2.079503574,0.038392707,pos,ns,0.492113643,Smarca2,Smarca2_Intron,19,26749963,26750012,26749963,26749964,50,-,CGTTGCCGTCTTGAAGATTCAGTAGAACTACATCCCAGGCATGTGTAGGT,"Intron (Smarca2-216/Smarca2, intron 27 of 32)",19,26605050,26778275,173226,1,Smarca2-216,144913,Smarca2-216;Smarca2-201;Smarca2-209;Smarca2-202;Smarca2-206;Smarca2-239;Smarca2-215;Smarca2-223;Smarca2-214;Smarca2-211;Smarca2-229;Smarca2-225;Smarca2-240;Smarca2-242;Smarca2-227;Smarca2-204;Smarca2-221;Smarca2-246;Smarca2-244;Smarca2-203;Smarca2-237;Smarca2-220;Smarca2-238;Smarca2-210;Smarca2-213;Smarca2-228;Smarca2-218;Smarca2-241;Smarca2-233;Smarca2-243;Smarca2-230;Smarca2-205;Smarca2-234;Smarca2-224;Smarca2-231;Smarca2-207;Smarca2-226;Smarca2-217,Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;-277;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,8,67155,ENSMUSG00000024921,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6248,cg14362508,-0.00000568,0.00000706,-0.804038942,0.421990618,loss,ns,0.0000169,0.000012,1.410400855,0.159423961,pos,ns,-0.000768301,0.003515008,-0.218577149,0.82712328,neg,ns,0.082429755,-0.00000609,0.000120881,-0.050415761,0.959823545,neg,ns,0.813125388,Tshz3,Tshz3_Intergenic_upstream,7,36603003,36603052,36603003,36603004,50,+,CGTTCAGCAAGTATTATTAAAATGAAGGGAAATTTATGGATGACACTTTG,Distal Intergenic,7,36698118,36773553,75436,1,Tshz3-201,-95066,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,12,58,243931,ENSMUSG00000021217,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27200,cg04889780,-0.00000578,0.00000492,-1.176093188,0.240460012,loss,ns,0.0000118,0.00000835,1.410359936,0.159436027,pos,ns,0.003403947,0.002447466,1.390804805,0.165282135,pos,ns,0.781774087,-0.0000859,0.0000842,-1.020819969,0.308135718,neg,ns,0.900816765,Mafb,Mafb_Intergenic_upstream,2,160485647,160485696,160485647,160485648,50,-,CGGTGCACATTACAGGCCCTAATGGGAGAGGAAGCTCCACAACAGTACAT,Distal Intergenic,2,160363703,160367065,3363,2,Mafb-201,-118631,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,22,16658,ENSMUSG00000074622,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1132,cg16550878,-0.0000045,0.0000055,-0.819412027,0.413180895,loss,ns,0.0000132,0.00000934,1.410049999,0.159527443,pos,ns,-0.000123363,0.002735165,-0.045102659,0.964054521,neg,ns,0.015898404,-0.0000878,0.0000941,-0.933923026,0.351070463,neg,ns,0.56774082,Ikzf1,Ikzf1_Exon,11,11748413,11748462,11748413,11748414,50,-,CGGGAGAGAAAATGAATGGCTCCCACAGGGACCAAGGCAGCTCGGCTTTG,"Exon (Ikzf1-203/Ikzf1, exon 5 of 9)",11,11685003,11754083,69081,1,Ikzf1-205,63410,Ikzf1-205;Ikzf1-203;Ikzf1-204;Ikzf1-202;Ikzf1-201,Ikzf1;Ikzf1;Ikzf1;Ikzf1;Ikzf1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,15,22778,ENSMUSG00000018654,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24351,cg17012009,-0.0000239,0.00000721,-3.321371724,0.001002823,loss,ns,-0.0000173,0.0000122,-1.409962599,0.159553228,neg,ns,-0.009053396,0.003587096,-2.523879125,0.012106137,neg,ns,1.916994403,0.0000456,0.00012336,0.369305666,0.712152029,pos,ns,0.741221364,Usp5,Usp5_Exon,6,124818514,124818563,124818514,124818515,50,-,CGTCTTCGTTGCCATAGAAACCAAGGCTACCTTTGGGCTCATCCGGAGTG,"Exon (Usp5-201/Usp5, exon 15 of 20)",6,124815019,124829484,14466,2,Usp5-201,10921,Tpi1-205;Tpi1-204;Tpi1-207;Tpi1-206;Usp5-201;Usp5-202;Usp5-204;Usp5-209;Usp5-203;Usp5-206;Usp5-205;Usp5-207,Tpi1;Tpi1;Tpi1;Tpi1;Usp5;Usp5;Usp5;Usp5;Usp5;Usp5;Usp5;Usp5,-4218;-4356;-4218;-4360;0;0;0;-621;4906;10845;5060;5637,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,22225,ENSMUSG00000038429,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
1976,cg06981660,-0.00000748,0.00000769,-0.972530048,0.331545149,loss,ns,0.0000184,0.0000131,1.40973045,0.159621734,pos,ns,-0.004824774,0.003827059,-1.260700062,0.208364964,neg,ns,0.681175306,0.000250211,0.000131612,1.901120091,0.05821347,pos,ns,0.725046388,Tfec,Tfec_Intergenic_downstream,6,16727698,16727747,16727746,16727747,50,+,GTCATTTTCAACACTCTCGAGAATCCAAGAGGCTATCAATCTTTCCCACG,Distal Intergenic,6,16834692,16835263,572,2,Tfec-204,107516,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,19,23,21426,ENSMUSG00000029553,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19525,cg18071764,-0.00000238,0.00000125,-1.905902862,0.057587565,loss,ns,0.00000299,0.00000212,1.409718267,0.15962533,pos,ns,0.001736426,0.000620394,2.798909616,0.005448834,pos,ns,2.263696386,-0.0000451,0.0000213,-2.112435634,0.035448505,neg,ns,0.035999471,Armc8,Armc8_fiveUTR,9,99568618,99568667,99568618,99568619,50,-,CGGATTGGGGTCTCCAACAAGCACGCCATCTTGAGCCTTCCCACCCGGCT,Promoter (<=1kb),9,99518804,99568649,49846,2,Armc8-202,0,Armc8-201;Armc8-202;Armc8-203;Armc8-204,Armc8;Armc8;Armc8;Armc8,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,10,74125,ENSMUSG00000032468,conserved gene and region,9,99568229,99568726,498,*,498,51,0.704819277,0.824771059,0.102409639,1.56E-39,CpGisland,TRUE,U1,Pr-A
16768,cg20607831,-0.00000591,0.00000198,-2.981682046,0.00309392,loss,ns,0.00000475,0.00000337,1.409680929,0.159636351,pos,ns,0.001655609,0.000987002,1.67741204,0.09446986,pos,ns,1.024706728,-0.0000544,0.0000339,-1.603725171,0.109792955,neg,ns,0.963879936,Tbc1d22a,Tbc1d22a_Intron,15,86494733,86494782,86494733,86494734,50,+,CGAGGTCATGATAATATGAAGCGAAGTGGATTAAAAATAAAACCAAAGGT,"Intron (Tbc1d22a-201/Tbc1d22a, intron 12 of 12)",15,86214459,86498503,284045,1,Tbc1d22a-201,280274,Tbc1d22a-201,Tbc1d22a,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,3,223754,ENSMUSG00000051864,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12836,cg11614260,-0.0000191,0.0000137,-1.397438322,0.163281108,loss,ns,0.0000327,0.0000232,1.409571737,0.159668583,pos,ns,0.02971463,0.006804788,4.366724004,0.0000172,pos,ns,4.764131921,-0.000794357,0.000234016,-3.39445346,0.000777092,neg,ns,0.770906529,Serbp1,Serbp1_threeUTR,6,67272131,67272180,67272179,67272180,50,+,TTTGTTAGTTCTTTTTCACATTACAGTGGCCTGAAGCACGAGGACAAACG,3' UTR,6,67266624,67297736,31113,1,Serbp1-201,5507,Serbp1-213;Serbp1-201;Serbp1-207;Serbp1-214;Serbp1-216;Serbp1-211;Serbp1-204;Serbp1-215;Serbp1-203;Serbp1-202;Serbp1-205;Serbp1-212;Serbp1-206;Serbp1-208;Serbp1-209;Serbp1-210,Serbp1;Serbp1;Serbp1;Serbp1;Serbp1;Serbp1;Serbp1;Serbp1;Serbp1;Serbp1;Serbp1;Serbp1;Serbp1;Serbp1;Serbp1;Serbp1,33955;0;0;5143;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,3,66870,ENSMUSG00000036371,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15701,cg09185235,-0.00000489,0.00000248,-1.969650978,0.04976844,loss,ns,0.00000594,0.00000421,1.409508431,0.159687272,pos,ns,0.002993184,0.001234618,2.424380865,0.015906072,pos,ns,1.798437052,-0.0000732,0.0000425,-1.725013403,0.085521719,neg,ns,0.947831356,Agfg1,Agfg1_Exon,1,82891449,82891498,82891497,82891498,50,+,CTTTCCATAAGGCCTTTCTGGAGCAATGCATTCTCAAGTGTTTCCTCACG,"Exon (Agfg1-208/Agfg1, exon 10 of 13)",1,82839483,82901182,61700,1,Agfg1-206,51966,Agfg1-206;Agfg1-202;Agfg1-208;Agfg1-201;Agfg1-205;Agfg1-204;Agfg1-207,Agfg1;Agfg1;Agfg1;Agfg1;Agfg1;Agfg1;Agfg1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,15463,ENSMUSG00000026159,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14508,cg10393837,-0.000018,0.00000332,-5.424663496,0.000000117,loss,yes,-0.00000796,0.00000565,-1.409504627,0.159688395,neg,ns,-0.002442894,0.001654546,-1.476473732,0.140831833,neg,ns,0.85129917,-0.0000386,0.0000569,-0.678746681,0.497804775,neg,ns,0.919807799,Ptprd,Ptprd_Exon,4,76086025,76086074,76086073,76086074,50,-,CAGTGTCCTGAACTGGACACTGGGACTATATGGCCCGGGCCCTTTGCTCG,"Exon (Ptprd-206/Ptprd, exon 18 of 36)",4,75941238,76449980,508743,2,Ptprd-206,363906,Ptprd-206;Ptprd-204;Ptprd-213;Ptprd-220;Ptprd-203;Ptprd-217;Ptprd-218;Ptprd-219;Ptprd-201;Ptprd-222;Ptprd-214;Ptprd-216,Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,13,32,19266,ENSMUSG00000028399,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12042,cg11472345,0.00000548,0.00000248,2.208336987,0.027952371,gain,ns,-0.00000595,0.00000422,-1.409487244,0.159693527,neg,ns,-0.00037774,0.001235736,-0.305680408,0.760053156,neg,ns,0.119156033,-0.0000491,0.0000425,-1.155587029,0.248739991,neg,ns,0.935503489,Fbxo38,Fbxo38_Exon,18,62515410,62515459,62515410,62515411,50,+,CGGCTTTGATCTGCTCACTGGTGACCTGACAGCCTTTCTCACAGCTGCTT,"Exon (Fbxo38-201/Fbxo38, exon 15 of 22)",18,62504155,62548695,44541,2,Fbxo38-201,33236,Fbxo38-201;Fbxo38-203;Fbxo38-204,Fbxo38;Fbxo38;Fbxo38,0;0;5270,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,6,107035,ENSMUSG00000042211,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14330,cg09243023,-0.000000451,0.0000008,-0.563445671,0.573538772,loss,ns,0.00000191,0.00000136,1.409481698,0.159695165,pos,ns,0.00106432,0.000398033,2.673951167,0.007893695,pos,ns,2.102719663,-0.0000223,0.0000137,-1.631777363,0.103741786,neg,ns,0.974305927,Myo5a,Myo5a_threeUTR,9,75168947,75168996,75168995,75168996,50,+,ACCAAGGCAGCAACCATCATTCAAAAGTACTGGCGCATGTATGTGGTCCG,3' UTR,9,75071188,75223688,152501,1,Myo5a-201,97759,Myo5a-201;Myo5a-214;Myo5a-202;Myo5a-206,Myo5a;Myo5a;Myo5a;Myo5a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,3,17918,ENSMUSG00000034593,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3320,cg04951214,-0.0000664,0.0000122,-5.434089267,0.000000112,loss,yes,0.0000293,0.0000208,1.409337789,0.159737658,pos,ns,-0.001173442,0.006083085,-0.192902452,0.847161682,neg,ns,0.072033696,-0.00027226,0.000209197,-1.301454309,0.19406936,neg,ns,0.785519904,Kcnma1,Kcnma1_Exon,14,23591632,23591681,23591632,23591633,50,-,CGATCTGTAATGTGAAATCTTTGTAGAAATTCTGGCAGGATTCTATTGGG,"Exon (Kcnma1-207/Kcnma1, exon 3 of 28)",14,23289431,23803304,513874,2,Kcnma1-207,211623,Kcnma1-207;Kcnma1-210;Kcnma1-205;Kcnma1-201;Kcnma1-208;Kcnma1-209;Kcnma1-212;Kcnma1-204;Kcnma1-202;Kcnma1-211;Kcnma1-229;Kcnma1-234;Kcnma1-223;Kcnma1-214;Kcnma1-216;Kcnma1-219;Kcnma1-220;Kcnma1-224;Kcnma1-233;Kcnma1-236;Kcnma1-237;Kcnma1-213;Kcnma1-228;Kcnma1-203;Kcnma1-206;Kcnma1-221;Kcnma1-225;Kcnma1-226;Kcnma1-230;Kcnma1-235;Kcnma1-238;Kcnma1-231;Kcnma1-232;Kcnma1-227,Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,16,41,16531,ENSMUSG00000063142,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23944,cg16283106,0.00000811,0.0000275,0.29524906,0.768001273,gain,ns,0.0000658,0.0000467,1.409265416,0.159759031,pos,ns,0.062424867,0.013668559,4.567040835,0.00000715,pos,ns,5.14594374,-0.000493438,0.000470061,-1.049733598,0.294658273,neg,ns,0.796249908,Farp1,Farp1_Exon,14,121253941,121253990,121253989,121253990,50,-,AGTGTCAATAAAATTGACATTTGTGAAGCAATTTCTGGCCTTTTTCTCCG,"Exon (B930095G15Rik-201/B930095G15Rik-201, exon 2 of 2)",14,121035564,121283744,248181,1,Farp1-201,218377,Farp1-201;Farp1-203,Farp1;Farp1,0;-918,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,223254,ENSMUSG00000025555,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17883,cg11610869,-0.00000127,0.00000566,-0.224054927,0.822862155,loss,ns,-0.0000135,0.00000961,-1.409203882,0.159777205,neg,ns,-0.007508442,0.002815721,-2.666614146,0.008064055,neg,ns,2.093446533,0.000237794,0.0000968,2.455728251,0.014608478,pos,ns,0.924494146,Irx5,Irx5_Intron,8,92335502,92335551,92335502,92335503,50,+,CGAGTAACCTCTTGTCATTTTGCCCTCCAGGACCTGAGCTAATTGGTGTA,"Intron (Crnde-202/Crnde-202, intron 3 of 3)",8,92357625,92376286,18662,1,Irx5-202,-22074,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,30,54352,ENSMUSG00000031737,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6939,cg02026974,-0.0000039,0.00000168,-2.322792286,0.020837382,loss,ns,-0.00000402,0.00000285,-1.408999622,0.159837545,neg,ns,-0.00064511,0.000836177,-0.771500134,0.440998218,neg,ns,0.355563165,0.0000332,0.0000288,1.152896625,0.249841014,pos,ns,0.949217188,Rev3l,Rev3l_threeUTR,10,39851296,39851345,39851296,39851297,50,-,CGGAGGGGATGGCTTAGTGGTCTAAGCATCAGATTTGAAATACCTAGAGT,3' UTR,10,39732118,39875211,143094,1,Rev3l-201,119178,Rev3l-201;Rev3l-204;Rev3l-207;Rev3l-205,Rev3l;Rev3l;Rev3l;Rev3l,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,5,7,19714,ENSMUSG00000019841,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9446,cg01194087,0.0000208,0.0000374,0.556510609,0.578263343,gain,ns,-0.0000896,0.0000636,-1.408953142,0.159851278,neg,ns,0.023624494,0.018635716,1.267699829,0.205856523,pos,ns,0.686435367,0.000409194,0.000640881,0.638486334,0.523628555,pos,ns,0.552642858,Zbtb16,Zbtb16_Intron,9,48758161,48758210,48758161,48758162,50,-,CGTTCTGTTTGAAATGAAGGTAGATTACAGGCCTGTGTTATTGAGCAGTT,"Intron (Zbtb16-201/Zbtb16, intron 2 of 6)",9,48654297,48835945,181649,2,Zbtb16-201,77735,Zbtb16-201;Zbtb16-202,Zbtb16;Zbtb16,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,37,235320,ENSMUSG00000066687,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3453,cg22889443,0.0000961,0.0000155,6.213676626,1.67E-09,gain,yes,-0.000037,0.0000263,-1.408915468,0.159862409,neg,ns,0.020220492,0.007699328,2.626267007,0.009061352,pos,ns,2.042807012,-0.000608145,0.000264779,-2.296798611,0.022296686,neg,ns,0.580587634,Bcl11a,Bcl11a_Intron,11,24091756,24091805,24091804,24091805,50,-,GCACAGTTACTGCACCTTGGAGGAGCTCTCAGGTGCCGCTCAGATGGGCG,"Intron (Bcl11a-201/Bcl11a, intron 2 of 4)",11,24078056,24173194,95139,1,Bcl11a-201,13700,Bcl11a-201;Bcl11a-203;Bcl11a-205;Bcl11a-202;Bcl11a-204,Bcl11a;Bcl11a;Bcl11a;Bcl11a;Bcl11a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,98,14025,ENSMUSG00000000861,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16573,cg04040316,-0.0000356,0.00000873,-4.079044468,0.0000576,loss,ns,-0.0000209,0.0000148,-1.40886981,0.159875901,neg,ns,-0.013301097,0.004344815,-3.0613723,0.002396104,neg,ns,2.620494291,-0.0000422,0.000149418,-0.282456921,0.777781667,neg,ns,0.820035652,Bcas3,Bcas3_Intron,11,85492492,85492541,85492492,85492493,50,-,CGCAAATGCTTTTTGTGGCTTGGCACCTCATTTGGGGCGTGGGTTTAGTT,"Intron (Bcas3-204/Bcas3, intron 14 of 15)",11,85353167,85510991,157825,1,Bcas3-204,139325,Bcas3-204;Bcas3-205;Bcas3-206;Bcas3-201;Bcas3-202;Bcas3-216;Bcas3-213;Bcas3-210,Bcas3;Bcas3;Bcas3;Bcas3;Bcas3;Bcas3;Bcas3;Bcas3,0;0;0;0;0;0;0;-27,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,24,192197,ENSMUSG00000059439,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18886,cg18349527,0.0000402,0.00000955,4.211166892,0.0000333,gain,ns,-0.0000229,0.0000162,-1.408828445,0.159888124,neg,ns,0.00641517,0.00475449,1.349286592,0.178229556,pos,ns,0.749020275,-0.0000533,0.000163507,-0.325941246,0.744688719,neg,ns,0.48288177,Hdac7,Hdac7_Intron,15,97832348,97832397,97832396,97832397,50,-,ATGAGTCAAACTTCAGCAATGTGCCCAGTGTCCCCCAGTGCATTACAGCG,"Intron (Hdac7-203/Hdac7, intron 1 of 23)",15,97792666,97844502,51837,2,Hdac7-203,12105,Hdac7-201;Hdac7-203;Hdac7-202;Hdac7-206;Hdac7-204;Hdac7-205;Hdac7-207;Hdac7-213;Hdac7-212,Hdac7;Hdac7;Hdac7;Hdac7;Hdac7;Hdac7;Hdac7;Hdac7;Hdac7,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,6,56233,ENSMUSG00000022475,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20168,cg25649550,-0.000000628,0.0000115,-0.054366643,0.956678074,loss,ns,0.0000276,0.0000196,1.408805358,0.159894947,pos,ns,-0.001463159,0.005746092,-0.254635551,0.799173431,neg,ns,0.097358963,-0.000295855,0.000197608,-1.497186276,0.135362256,neg,ns,0.672956525,Slc1a2,Slc1a2_Exon,2,102780694,102780743,102780742,102780743,50,+,TTCTAATGCTTTCATAAATCCAGTCTCTCCATTATGTGGAATATCAGTCG,"Exon (Slc1a2-212/Slc1a2, exon 4 of 5)",2,102658659,102790784,132126,1,Slc1a2-202,122035,Slc1a2-202;Slc1a2-204;Slc1a2-201;Slc1a2-203;Slc1a2-209;Slc1a2-212,Slc1a2;Slc1a2;Slc1a2;Slc1a2;Slc1a2;Slc1a2,0;121413;74256;0;24787;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,2,20511,ENSMUSG00000005089,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7656,cg23542171,-0.00000135,0.000000959,-1.405444096,0.160890641,loss,ns,-0.0000023,0.00000163,-1.40877439,0.159904099,neg,ns,-0.000179617,0.000477407,-0.376234627,0.706999833,neg,ns,0.150580689,-0.0000155,0.0000164,-0.946350537,0.344706884,neg,ns,0.971280121,Rgp1,Rgp1_Exon,4,43580521,43580570,43580569,43580570,50,+,CGGGGTCAGTCAGTCAAGTACGTCTACAAACTGACCATTGGCTGCCAGCG,"Exon (Rgp1-202/Rgp1, exon 5 of 9)",4,43578715,43587487,8773,1,Rgp1-202,1806,Gba2-202;Gba2-207;Gba2-201;Gba2-206;Gba2-203;Msmp-201;Rgp1-202;Rgp1-203;Rgp1-204;Rgp1-201;Rgp1-205;Rgp1-206;Rgp1-207,Gba2;Gba2;Gba2;Gba2;Gba2;Msmp;Rgp1;Rgp1;Rgp1;Rgp1;Rgp1;Rgp1;Rgp1,-2432;-1984;-1648;-2432;-1885;3924;0;0;0;0;1538;0;-644,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,242406,ENSMUSG00000028468,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16272,cg00689651,0.000107271,0.000012,8.950271264,3.33E-17,gain,yes,-0.0000287,0.0000204,-1.408714831,0.159921702,neg,ns,0.015968603,0.005965156,2.676979802,0.007824322,pos,ns,2.106553282,-0.000126331,0.000205141,-0.615825443,0.538461612,neg,ns,0.198187948,Lyl1,Lyl1_threeUTR,8,84704725,84704774,84704773,84704774,50,-,TCTTTATTTCTTTATTTCACATACACATTAGCCATTCAATGGAGAAGCCG,3' UTR,8,84701482,84704940,3459,1,Lyl1-204,3243,Lyl1-203;Lyl1-204;Lyl1-201;Lyl1-202;Nfix-207;Nfix-208;Nfix-204;Nfix-201;Nfix-202;Nfix-203;Nfix-206;Trmt1-201;Trmt1-203;Trmt1-204;Trmt1-211;Trmt1-205;Trmt1-210;Trmt1-218,Lyl1;Lyl1;Lyl1;Lyl1;Nfix;Nfix;Nfix;Nfix;Nfix;Nfix;Nfix;Trmt1;Trmt1;Trmt1;Trmt1;Trmt1;Trmt1;Trmt1,3276;0;3181;2944;0;0;0;0;0;0;0;15859;15478;15461;15442;15261;6327;5654,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,TRUE,FALSE,threeUTR,2,2,17095,ENSMUSG00000034041,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
20464,cg09417788,0.000161433,0.0000109,14.85087257,4.71E-38,gain,yes,-0.000026,0.0000185,-1.408683089,0.159931084,neg,ns,0.014608734,0.005410234,2.700203734,0.007310343,pos,ns,2.136062247,0.0000293,0.000186058,0.157442503,0.874998616,pos,ns,0.098219685,Hoxc4,Hoxc4_Intergenic_downstream,15,103061674,103061723,103061674,103061675,50,-,CGCAGCCGCCTTTGTACGCGTGATTTATGACTTCAATCTTGGTTCACCGA,Distal Intergenic,15,103034395,103036852,2458,1,Hoxc4-201,27328,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,32,91,15423,ENSMUSG00000075394,mapped to different genes,15,103061537,103061809,273,*,273,19,0.586080586,0.8125,0.06959707,7.69E-12,CpGisland,TRUE,U13,Hc-P
6429,cg09515922,0.000113736,0.0000139,8.154639805,8.79E-15,gain,yes,-0.0000334,0.0000237,-1.408575011,0.159963032,neg,ns,0.018831487,0.006941763,2.712781586,0.007044871,pos,ns,2.152126946,-0.000468194,0.000238727,-1.961214325,0.05074891,neg,ns,0.380917479,Tmem218,Tmem218_Promoter,9,37204015,37204064,37204063,37204064,50,-,TTCTGTCAGCTCCCACATCTCCCAAAATCCAGGCTTAATAATTTACAGCG,Promoter (4-5kb),9,37208223,37224700,16478,1,Tmem218-201,-4208,Tmem218-201,Tmem218,-4159,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,5,66279,ENSMUSG00000032121,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22438,cg24233227,-0.0000225,0.00000881,-2.554569866,0.011109616,loss,ns,0.0000211,0.000015,1.407976488,0.160140044,pos,ns,0.000839073,0.004384823,0.191358488,0.848370012,pos,ns,0.071414691,-0.00016108,0.000150794,-1.068214334,0.286254958,neg,ns,0.842453985,Fam222a,Fam222a_Intergenic_upstream,5,114538930,114538979,114538930,114538931,50,+,CGTTGTAAATGGCATTAACAGACTGTCACAGCAGCCACATGGTATTAGCA,Distal Intergenic,5,114568016,114613220,45205,1,Fam222a-201,-29037,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,16,433940,ENSMUSG00000041930,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
21876,cg26476875,0.00000241,0.00000247,0.975758555,0.32994493,gain,ns,0.00000592,0.0000042,1.407969093,0.160142232,pos,ns,0.00199225,0.001231215,1.618116689,0.106654425,pos,ns,0.97202112,-0.0000511,0.0000423,-1.206982565,0.228359036,neg,ns,0.929012764,Rnf11,Rnf11_Exon,4,109454311,109454360,109454311,109454312,50,+,CGTGAAGGATCTCATCAACCAGTCATCTATACAGTCCAGGTGATAGATGT,"Exon (Rnf11-201/Rnf11, exon 3 of 3)",4,109451098,109476675,25578,2,Rnf11-201,22315,Rnf11-201;Rnf11-202;Rnf11-203,Rnf11;Rnf11;Rnf11,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,29864,ENSMUSG00000028557,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2863,cg03205428,0.000069,0.0000192,3.59482602,0.00037751,gain,ns,0.0000459,0.0000326,1.407927066,0.160154667,pos,ns,0.018488046,0.009554107,1.935088967,0.053888768,pos,ns,1.268501742,-0.00043415,0.000328565,-1.321351956,0.187358435,neg,ns,0.470393556,Zfp503,Zfp503_Promoter,14,21994542,21994591,21994542,21994543,50,-,CGCCTTTAAATGGGAACACATTTTCCGCGGCCATAATTCATGTTTTTTAA,Promoter (4-5kb),14,21983959,21989601,5643,2,Zfp503-201,-4990,Zfp503-201,Zfp503,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,18,27,218820,ENSMUSG00000039081,mapped to different genes,14,21994122,21994568,447,*,447,26,0.579418345,0.69759904,0.058165548,4.29E-14,CpGisland,TRUE,U3,Pr-B
4143,cg01093013,-0.000053,0.0000162,-3.272323924,0.001187048,loss,ns,0.0000388,0.0000275,1.407785781,0.160196476,pos,ns,0.006623938,0.008064816,0.821337701,0.412085132,pos,ns,0.385013055,-0.000321455,0.000277348,-1.159030424,0.247335794,neg,ns,0.534613272,Gm12074,Gm12074_Intergenic_upstream,11,26962296,26962345,26962296,26962297,50,-,CGTTTTATGCATGCAGCGTAATGTCTTTACTTGAAGTGCTGTTTATTCAT,Distal Intergenic,11,27051697,27051915,219,1,Gm12074-201,-89401,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,10,100042367,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22930,cg13156753,0.0000165,0.00000447,3.696614285,0.000258302,gain,ns,-0.0000107,0.0000076,-1.407764959,0.160202639,neg,ns,-0.001626365,0.002226012,-0.730618049,0.465564295,neg,ns,0.332020334,-0.00000148,0.0000766,-0.019375598,0.984553941,neg,ns,0.877824833,Exoc7,Exoc7_Exon,11,116297611,116297660,116297659,116297660,50,-,TAGACCATGCTGGGAATACTGTTTCAGAAGGTTCTGAGCCTTACGGATCG,"Exon (Exoc7-201/Exoc7, exon 7 of 20)",11,116288001,116306734,18734,2,Exoc7-201,9074,Exoc7-201;Exoc7-202;Exoc7-203;Exoc7-208;Exoc7-207;Exoc7-205,Exoc7;Exoc7;Exoc7;Exoc7;Exoc7;Exoc7,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,53413,ENSMUSG00000020792,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26388,cg20066627,0.00002,0.00000242,8.277105241,3.80E-15,gain,yes,-0.00000578,0.00000411,-1.407712493,0.160218167,neg,ns,0.003155123,0.001203901,2.620748895,0.009206024,pos,ns,2.035927896,-0.0000834,0.0000414,-2.014551829,0.044814892,neg,ns,0.039556384,Nkx2-2,Nkx2-2_Exon,2,147188360,147188409,147188360,147188361,50,-,CGGTTTTTGCATTTATTTCAGTGGCGAAATAATACATGATTGACGCTCTC,"Exon (6430503K07Rik-201/6430503K07Rik-201, exon 3 of 3)",2,147186305,147194243,7939,2,Nkx2-2-202,5834,Nkx2-2-203;Nkx2-2-201;Nkx2-2-202;Nkx2-2-204,Nkx2-2;Nkx2-2;Nkx2-2;Nkx2-2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,15,30,18088,ENSMUSG00000027434,conserved gene but different region,2,147188041,147188404,364,*,364,26,0.585164835,0.836633663,0.071428571,2.81E-16,CpGisland,TRUE,U13,Hc-P
13558,cg01301023,0.000000561,0.00000221,0.254255054,0.799467087,gain,ns,0.00000528,0.00000375,1.407667916,0.160231362,pos,ns,0.001749278,0.001097856,1.593358948,0.112098751,pos,ns,0.950399225,-0.0000771,0.0000378,-2.041362853,0.042061228,neg,ns,0.95889747,Gm10172,Gm10172_Intron,7,71324690,71324739,71324738,71324739,50,-,GTTACTAAGAGCTGACAAACCTGTCAAGTGTATAATGTAGGAGACTATCG,"Intron (Gm29328-206/Gm29328-206, intron 1 of 3)",7,71332363,71332921,559,2,Gm10172-201,8231,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,31,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8418,cg16771805,-0.000016,0.0000116,-1.371826986,0.171109272,loss,ns,-0.0000278,0.0000198,-1.407437194,0.160299666,neg,ns,-0.000903549,0.005795594,-0.1559028,0.87621111,neg,ns,0.057391244,-0.000266599,0.00019931,-1.337609462,0.182004279,neg,ns,0.295725683,Zeb2,Zeb2_Exon,2,45104750,45104799,45104750,45104751,50,+,CGTTATAAACATGTAAATGAAACACATTAGGGCAGACAATCAATTGTCTG,"Exon (Zeb2-210/Zeb2, exon 3 of 3)",2,44983632,45117395,133764,2,Zeb2-212,12596,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219;Zeb2-211;Zeb2-210;Zeb2-205;Zeb2-223;Zeb2-217;Zeb2-225;Zeb2-204,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;5277;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,21,158,24136,ENSMUSG00000026872,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
803,cg05275337,-0.00000501,0.00000917,-0.546552033,0.585079693,loss,ns,0.0000219,0.0000156,1.407378708,0.160316985,pos,ns,0.017266418,0.004561549,3.785209391,0.000184365,pos,ns,3.734320525,-0.000210616,0.000156871,-1.342601688,0.180383274,neg,ns,0.276929153,Chd7,Chd7_Intron,4,8799593,8799642,8799593,8799594,50,-,CGCAGGTGTTGAGAATGTTTGAAAGCTGATTGAGGGAAGCAGATGGCTTT,"Intron (Chd7-201/Chd7, intron 3 of 37)",4,8690921,8866810,175890,1,Chd7-201,108672,Chd7-201;Chd7-202;Chd7-206,Chd7;Chd7;Chd7,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,16,320790,ENSMUSG00000041235,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15199,cg13545911,0.0000254,0.00000984,2.576879378,0.010431874,gain,ns,0.0000235,0.0000167,1.407375915,0.160317812,pos,ns,0.002199314,0.00489685,0.449128402,0.653652853,pos,ns,0.184652839,0.000152787,0.000168402,0.907276977,0.364965054,pos,ns,0.372482752,Rhcg,Rhcg_Intron,7,79549113,79549162,79549161,79549162,50,+,ATTTTCCCTCCTTTTCGAGTTTGTTTTAGGCATTCACAGCTCTCACCCCG,"Intron (Gm35040-201/Gm35040-201, intron 1 of 1)",7,79593369,79594929,1561,2,Rhcg-203,45767,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,9,56315,ENSMUSG00000030549,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
3722,cg24084896,0.000047,0.000012,3.902980468,0.000116597,gain,ns,0.0000288,0.0000204,1.407197368,0.16037069,pos,ns,0.000438347,0.005990013,0.073179614,0.941710382,pos,ns,0.026082641,0.0000666,0.000205996,0.323522718,0.746517546,pos,ns,0.823267372,Pou2f2,Pou2f2_Intron,7,25163644,25163693,25163644,25163645,50,+,CGCGCAGGGCAAAATCGATGGCGTTTAATCGCCTTGCCGATTCCCAGTCA,"Intron (Pou2f2-208/Pou2f2, intron 1 of 4)",7,25120618,25179726,59109,2,Pou2f2-208,16033,Pou2f2-208,Pou2f2,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,29,18987,ENSMUSG00000008496,conserved gene and region,7,25163636,25163773,138,*,138,15,0.543478261,1.493506494,0.108695652,2.55E-12,CpGisland,TRUE,U11,Tr-P
353,cg10986437,-0.0000112,0.0000136,-0.826133177,0.409363906,loss,ns,0.0000325,0.0000231,1.407113961,0.160395396,pos,ns,0.0368705,0.006776786,5.440706232,0.000000108,pos,ns,6.966969827,-0.000746909,0.000233053,-3.20488559,0.001491928,neg,ns,0.664451101,Zfhx4,Zfhx4_Intron,3,5222996,5223045,5222996,5222997,50,+,CGAAGCCAAATTGCCCTCTGCCTATATGATATTAATGTGCAAATCAATAT,"Intron (Zfhx4-203/Zfhx4, intron 1 of 10)",3,5218526,5413165,194640,1,Zfhx4-203,4470,Zfhx4-203;Zfhx4-202;Zfhx4-201;Zfhx4-204,Zfhx4;Zfhx4;Zfhx4;Zfhx4,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,27,77,80892,ENSMUSG00000025255,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11954,cg13560607,0.0000105,0.00000332,3.163056356,0.001715912,gain,ns,0.00000794,0.00000565,1.407047958,0.160414949,pos,ns,0.000228719,0.001653965,0.138285137,0.890104854,pos,ns,0.050558831,0.0000926,0.0000569,1.628447335,0.104445871,pos,ns,0.016243498,Tbr1,Tbr1_Exon,2,61804089,61804138,61804137,61804138,50,-,GCGAGAAGAGGCCACCGGCTCGCGCTTTGTATACTTTGCACTTGAAATCG,"Exon (Tbr1-204/Tbr1, exon 2 of 2)",2,61802930,61804558,1629,1,Tbr1-204,1159,Psmd14-201;Psmd14-208;Psmd14-202;Tbr1-204;Tbr1-201;Tbr1-202;Tbr1-203,Psmd14;Psmd14;Psmd14;Tbr1;Tbr1;Tbr1;Tbr1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,24,27,21375,ENSMUSG00000035033,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3194,cg25150443,-0.0000111,0.0000118,-0.940432931,0.347727753,loss,ns,0.0000283,0.0000201,1.406956482,0.160442052,pos,ns,0.002423904,0.005890918,0.411464538,0.681016262,pos,ns,0.166842517,-0.00031134,0.000202588,-1.536814286,0.125358802,neg,ns,0.665289938,Gm11888,Gm11888_Intergenic_upstream,4,23173490,23173539,23173490,23173491,50,-,CGGGGTTTCCCATTAACAAGTGTAACCAAAGCCCCCATTGGCCTTGCTAA,Distal Intergenic,4,23484820,23486020,1201,1,Gm11888-201,-311330,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,14,625462,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5890,cg02700447,-0.0000141,0.000006,-2.352774905,0.019258625,loss,ns,-0.0000143,0.0000102,-1.406864415,0.160469332,neg,ns,0.00489249,0.002986978,1.637939737,0.102448842,pos,ns,0.989492945,-0.000163716,0.000102722,-1.593782494,0.112003794,neg,ns,0.732177594,Prrc2a,Prrc2a_Exon,17,35162197,35162246,35162245,35162246,50,-,TCTACCTCTTGGGGTCGGACTGCTCCTGTTTGCTTGCCCATCCTGTTCCG,"Exon (Prrc2a-201/Prrc2a, exon 3 of 31)",17,35149076,35164897,15822,2,Prrc2a-201,2651,Prrc2a-201;Prrc2a-206;Prrc2a-203,Prrc2a;Prrc2a;Prrc2a,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,13,53761,ENSMUSG00000024393,conserved gene and region,17,35162172,35162457,286,*,286,14,0.555944056,0.634749524,0.048951049,0.000000588,CpGisland,TRUE,U12,Tr-I
20187,cg25845698,0.000105952,0.00000784,13.51869772,4.70E-33,gain,yes,-0.0000187,0.0000133,-1.406857202,0.16047147,neg,ns,0.011997386,0.003900774,3.075642174,0.002287617,pos,ns,2.640616597,-0.000105215,0.000134147,-0.784325624,0.433447975,neg,ns,0.178206127,Hoxc13,Hoxc13_Exon,15,102921841,102921890,102921889,102921890,50,-,CAATGGCTGGGACAGTCAGGTGTACTGCTCCAAGGAGCAGTCGCAGTCCG,Promoter (<=1kb),15,102921103,102928814,7712,1,Hoxc13-201,738,Hoxc13-201,Hoxc13,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,15422,ENSMUSG00000001655,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
6522,cg24822971,0.000000142,0.00000511,0.02770544,0.977914912,gain,ns,0.0000122,0.00000868,1.406749933,0.16050326,pos,ns,0.002063722,0.002542711,0.811622454,0.417631045,pos,ns,0.379207225,-0.0000955,0.0000874,-1.091677888,0.275822423,neg,ns,0.551496461,Zfp536,Zfp536_Intron,7,37600585,37600634,37600585,37600586,50,-,CGCAAGTGTTTACCGTTGCTAGTATGCATACATGAAAAATTAAATTGTGC,"Intron (Zfp536-202/Zfp536, intron 4 of 6)",7,37479104,37769624,290521,2,Zfp536-202,168990,Zfp536-202;Zfp536-201;Zfp536-203;Zfp536-206;Zfp536-209;Zfp536-208,Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,73,112,243937,ENSMUSG00000043456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16691,cg00039845,0.0000256,0.00000543,4.706460497,0.00000381,gain,ns,-0.000013,0.00000923,-1.406652186,0.160532232,neg,ns,0.000284841,0.00270283,0.105386385,0.916137376,pos,ns,0.038039398,0.0000762,0.000093,0.819861361,0.412925056,pos,ns,0.899181972,Ift43,Ift43_Intron,12,86115877,86115926,86115925,86115926,50,-,AAGTAATGGCCCCTCAGGGACTTTCAGGACTTTGCTCTCAATGTCAGCCG,"Intron (Ift43-201/Ift43, intron 3 of 7)",12,86082563,86162458,79896,1,Ift43-201,33314,Ift43-201;Ift43-205;Ift43-206;Ift43-207;Ift43-203,Ift43;Ift43;Ift43;Ift43;Ift43,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,5,76411,ENSMUSG00000007867,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13007,cg11330417,0.00000801,0.0000028,2.86437385,0.004463511,gain,ns,-0.00000668,0.00000475,-1.406486924,0.160581225,neg,ns,-0.000871204,0.001391666,-0.626015668,0.531765308,neg,ns,0.274279999,-0.0000129,0.0000479,-0.269488825,0.787732828,neg,ns,0.032130065,Hes7,Hes7_Exon,11,69122180,69122229,69122228,69122229,50,-,TGGAGTTCGCCGTGGGCTACTTGAGGGAGCGAAGCCGGGTGGAGCCCCCG,"Exon (Hes7-201/Hes7, exon 3 of 4)",11,69120404,69124055,3652,1,Hes7-201,1776,Aloxe3-201;Aloxe3-203;Aloxe3-205;Hes7-201,Aloxe3;Aloxe3;Aloxe3;Hes7,-3667;-3986;-4174;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,2,84653,ENSMUSG00000023781,conserved gene and region,11,69122122,69123013,892,*,892,88,0.718609866,0.774213911,0.098654709,3.22E-66,CpGisland,TRUE,NA,NRS
14586,cg10224599,-0.000000864,0.00000203,-0.424514351,0.671485207,loss,ns,0.00000486,0.00000346,1.406455754,0.160590467,pos,ns,0.00088038,0.001012531,0.869483975,0.385255176,pos,ns,0.414251518,-0.0000185,0.0000348,-0.530247415,0.596319999,neg,ns,0.947129177,1700063K16Rik,1700063K16Rik_Intron,16,76683087,76683136,76683087,76683088,50,-,CGAAGCTCTTGTTTTCCAATAAAGAGGTTAATTGGCTTCAGAGAAAATAC,"Intron (Gm45029-201/Gm45029-201, intron 1 of 1)",16,76821373,76821741,369,2,1700063K16Rik-201,138654,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,2,76610,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23946,cg02071066,0.00000228,0.00000326,0.69935219,0.484856362,gain,ns,0.00000778,0.00000553,1.406434536,0.160596759,pos,ns,0.00000437,0.001621202,0.002695821,0.997850783,pos,ns,0.000934398,-0.0000414,0.0000558,-0.742090702,0.458594261,neg,ns,0.940830204,Gm9240,Gm9240_Intron,7,121259687,121259736,121259687,121259688,50,-,CGGATCTATCTCAAAGGTTCCGCTCAGTTTATGTGCTAGTAAAAGCCGGC,"Intron (Gm45079-201/Gm45079-201, intron 1 of 1)",7,121223253,121223994,742,2,Gm9240-201,-35742,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,4,668556,NA,mapped to different genes,7,121259531,121259891,361,*,361,19,0.540166205,0.735628486,0.052631579,9.81E-10,CpGisland,TRUE,U15,NS
9617,cg06078065,-0.00000222,0.00000576,-0.38528931,0.700287311,loss,ns,-0.0000138,0.00000979,-1.406341103,0.160624464,neg,ns,-0.002831486,0.002869196,-0.986856943,0.324482385,neg,ns,0.488808875,-0.000123693,0.0000987,-1.25358502,0.210937458,neg,ns,0.89288527,Ncam1,Ncam1_Exon,9,49541882,49541931,49541930,49541931,50,-,ACTTACGTGGAGGAGGGCTATCTGCATTTCCCATGGATGGAACACAGACG,"Exon (Ncam1-205/Ncam1, exon 13 of 20)",9,49502136,49798925,296790,2,Ncam1-204,256994,Ncam1-204;Ncam1-205;Ncam1-202;Ncam1-201;Ncam1-206;Ncam1-203,Ncam1;Ncam1;Ncam1;Ncam1;Ncam1;Ncam1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,16,17967,ENSMUSG00000039542,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11610,cg26168324,0.0000479,0.00000919,5.212532679,0.000000341,gain,yes,-0.0000219,0.0000156,-1.405936161,0.160744585,neg,ns,0.021262334,0.004573544,4.648984749,0.00000494,pos,ns,5.306052026,-0.000790904,0.000157284,-5.028514321,0.000000838,neg,yes,0.16798821,Emx2,Emx2_fiveUTR,19,59458769,59458818,59458817,59458818,50,+,AGAAGCGAACACTTCCATGGATTGTCCTTGGACTTAGGGCGCCCTGCCCG,Promoter (<=1kb),19,59458372,59465357,6986,1,Emx2-201,397,Emx2-201;Emx2-202;Emx2-203,Emx2;Emx2;Emx2,0;-701;-3984,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,23,13797,ENSMUSG00000043969,mapped to different genes,19,59458392,59458858,467,*,467,34,0.597430407,0.819721218,0.072805139,2.25E-21,CpGisland,TRUE,U13,Hc-P
7432,cg20633943,0.0000394,0.00000454,8.681109258,2.27E-16,gain,yes,-0.0000108,0.00000771,-1.405879496,0.160761399,neg,ns,0.002430295,0.002260044,1.075330907,0.283062815,pos,ns,0.548117179,0.0000886,0.0000777,1.139627353,0.255321374,pos,ns,0.131072135,Ostm1,Ostm1_Intron,10,42632475,42632524,42632523,42632524,50,-,ACTTAGAAGCAATTTGGGAGAACCCTTCTCAATGAATACATTTACCCCCG,"Intron (Ostm1-202/Ostm1, intron 2 of 5)",10,42583835,42698323,114489,1,Ostm1-202,48640,Ostm1-202;Ostm1-203,Ostm1;Ostm1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,21,22,14628,ENSMUSG00000038280,conserved gene and region,10,42632523,42632647,125,*,125,9,0.528,1.057330827,0.072,0.00000584,CpGisland,TRUE,U3,Pr-B
24710,cg22351850,-0.00000478,0.00000153,-3.123713759,0.00195456,loss,ns,0.00000366,0.0000026,1.405653501,0.160828472,pos,ns,0.000538153,0.000762298,0.705961419,0.480742321,pos,ns,0.318087644,-0.0000271,0.0000262,-1.033808204,0.302031645,neg,ns,0.059350206,Ccnt2,Ccnt2_Exon,1,127774240,127774289,127774240,127774241,50,-,CGTGGAGCTTCTTCTCGCTGGTTCTTTACTCGGGAACAGCTGGAGAACAC,Promoter (<=1kb),1,127774164,127793589,19426,1,Ccnt2-203,76,Ccnt2-203;Ccnt2-204;Ccnt2-206;Ccnt2-205;Ccnt2-202;Ccnt2-201,Ccnt2;Ccnt2;Ccnt2;Ccnt2;Ccnt2;Ccnt2,0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,11,72949,ENSMUSG00000026349,conserved gene and region,1,127773875,127774860,986,*,986,93,0.643002028,0.927282104,0.094320487,5.41E-68,CpGisland,TRUE,U1,Pr-A
2689,cg06412451,0.00000827,0.00000222,3.727211027,0.000230074,gain,ns,-0.0000053,0.00000377,-1.405577367,0.160851073,neg,ns,-0.002181085,0.001103823,-1.975936362,0.049048399,neg,ns,1.30937516,0.0000615,0.000038,1.619581043,0.106339122,pos,ns,0.951606563,Ilf3,Ilf3_Exon,9,21393687,21393736,21393735,21393736,50,+,TCTTCTTATTCCATCCATGAATAGAAACGCTATCAGTCAACGACCCCCCG,"Exon (Ilf3-201/Ilf3, exon 6 of 20)",9,21367871,21405360,37490,1,Ilf3-201,25816,Ilf3-201;Ilf3-203;Ilf3-206;Ilf3-213;Ilf3-210;Ilf3-202;Ilf3-207;Ilf3-204;Ilf3-208;Ilf3-209;Ilf3-216;Ilf3-211,Ilf3;Ilf3;Ilf3;Ilf3;Ilf3;Ilf3;Ilf3;Ilf3;Ilf3;Ilf3;Ilf3;Ilf3,0;0;0;0;25684;0;25155;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,11,16201,ENSMUSG00000032178,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26541,cg15363953,-0.00000524,0.00000526,-0.995923728,0.320063942,loss,ns,0.0000126,0.00000894,1.405546184,0.16086033,pos,ns,0.007635263,0.002618132,2.91630208,0.003800508,pos,ns,2.420158358,-0.00023034,0.00009,-2.558268813,0.010994596,neg,ns,0.903963256,Casz1,Casz1_Intron,4,148897368,148897417,148897416,148897417,50,+,ATGGGAAGATGATTTTCAATTTTATTTGATTACCGGGACCCCTGGCATCG,"Intron (Casz1-201/Casz1, intron 3 of 15)",4,148804429,148945129,140701,1,Casz1-201,92939,Casz1-201;Casz1-202;Casz1-206,Casz1;Casz1;Casz1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,94,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5149,cg03764052,0.0000506,0.00000656,7.714824762,1.67E-13,gain,yes,-0.0000157,0.0000111,-1.405362751,0.160914795,neg,ns,0.00856636,0.0032631,2.625221256,0.009088611,pos,ns,2.041502472,-0.000385146,0.000112218,-3.4321293,0.000680177,neg,ns,0.090467528,Fli1,Fli1_Promoter,9,32544837,32544886,32544837,32544838,50,+,CGTGTCTTGGCTCGCTCAATGTCAGCCCTTTTGACCCGGTCAAGACTTTC,Promoter (1-2kb),9,32428059,32542861,114803,2,Fli1-202,-1976,Fli1-201;Fli1-202,Fli1;Fli1,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,5,15,14247,ENSMUSG00000016087,conserved gene but different region,9,32544734,32544977,244,*,244,13,0.536885246,0.740429505,0.053278689,0.000000654,CpGisland,TRUE,NA,NRS
21628,cg21706719,-0.00000332,0.00000202,-1.638762667,0.10227716,loss,ns,-0.00000483,0.00000344,-1.405354962,0.160917108,neg,ns,-0.000529802,0.001007224,-0.52600185,0.599263005,neg,ns,0.222382532,-0.00006,0.0000346,-1.731141572,0.08442148,neg,ns,0.964105798,Gm13913,Gm13913_Intergenic_upstream,2,108649465,108649514,108649465,108649466,50,+,CGGGAGATAAAAATTTAAACGTCTCTGTAATATTTATAGGAAAAGTGTCA,Distal Intergenic,2,108578130,108578389,260,2,Gm13913-201,-71076,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18745,cg00652484,-0.00000458,0.00000159,-2.879929916,0.004254614,loss,ns,0.0000038,0.0000027,1.405255095,0.160946767,pos,ns,-0.000016,0.000791303,-0.020239427,0.983865397,neg,ns,0.007064314,0.0000195,0.0000272,0.716861573,0.473999258,pos,ns,0.95192344,Gm48555,Gm48555_Intergenic_downstream,10,97101505,97101554,97101553,97101554,50,-,GCTAGACTATGAAAGCCATAATCCATATTTAATATCCTTTCTCATTAACG,Distal Intergenic,10,97105493,97106584,1092,2,Gm48555-201,5079,Gm48555-201,Gm48555,5030,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24085,cg22671203,0.0000221,0.0000115,1.930838949,0.054414655,gain,ns,-0.0000274,0.0000195,-1.404804239,0.161080715,neg,ns,0.000697138,0.005705421,0.122188677,0.902828764,pos,ns,0.044394613,-0.00000533,0.000196209,-0.027172395,0.978339717,neg,ns,0.812942968,Zic5,Zic5_Intergenic_downstream,14,122455415,122455464,122455415,122455416,50,+,CGTCTTGCTTGCCAATTGCCATAGAAATCTTAACACACCATGAAGATTGT,Downstream (1-2kb),14,122459193,122460021,829,2,Zic5-202,4557,Zic5-201;Zic5-202,Zic5;Zic5,0;4557,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,14,26,65100,ENSMUSG00000041703,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
14332,cg02532525,-0.00000456,0.00000182,-2.511937573,0.012514901,loss,ns,0.00000433,0.00000308,1.404784818,0.161086487,pos,ns,0.001392074,0.000903362,1.540993623,0.12433846,pos,ns,0.905394517,-0.0000608,0.0000311,-1.955839783,0.051381954,neg,ns,0.065043733,Hic1,Hic1_Exon,11,75173399,75173448,75173399,75173400,50,+,CGGCACCTTGGCTCTAGACTGCTTACTGCCCGGGCCGCCCTCAGTAACAG,Promoter (3-4kb),11,75164565,75169519,4955,2,Hic1-201,-3880,Dph1-201;Dph1-205;Dph1-204;Hic1-201;Ovca2-201;Ovca2-202,Dph1;Dph1;Dph1;Hic1;Ovca2;Ovca2,0;0;7864;0;5387;5339,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,10,15248,ENSMUSG00000043099,mapped to different genes,11,75173365,75173778,414,*,414,46,0.719806763,0.891573034,0.111111111,1.73E-37,CpGisland,TRUE,U3,Pr-B
14318,cg26636682,0.0000067,0.00000323,2.073485964,0.038952679,gain,ns,-0.00000771,0.00000549,-1.404738599,0.161100224,neg,ns,-0.001989895,0.001607334,-1.238009443,0.216649323,neg,ns,0.664242664,0.000106252,0.0000553,1.922206427,0.055496073,pos,ns,0.919591315,Kcnh5,Kcnh5_Exon,12,75154171,75154220,75154219,75154220,50,+,TTTTCTGCATGACGTCAGCTCGATGATATCCAGAGAGTTTACAAAAACCG,"Exon (Kcnh5-201/Kcnh5, exon 2 of 11)",12,74897220,75177332,280113,2,Kcnh5-201,23112,Kcnh5-201,Kcnh5,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,238271,ENSMUSG00000034402,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21872,cg04956792,0.00000269,0.00000888,0.303357189,0.761821153,gain,ns,0.0000212,0.0000151,1.40465821,0.161124118,pos,ns,0.002889698,0.004420289,0.653735199,0.513767042,pos,ns,0.289233759,-0.000171214,0.000152013,-1.126311649,0.260904772,neg,ns,0.622249072,Gm1943,Gm1943_Intergenic_upstream,8,109378547,109378596,109378547,109378548,50,+,CGGGTCAATAGCTGGATGCTTCAGGAGCAGAGGATCTATCAACTGCAGAC,Distal Intergenic,8,109340691,109340864,174,2,Gm1943-201,-37683,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,28,384864,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7071,cg02162880,0.0000281,0.00000868,3.231916668,0.001361923,gain,ns,-0.0000207,0.0000147,-1.404432566,0.161191202,neg,ns,-0.005960568,0.00431974,-1.379844127,0.168629023,neg,ns,0.773067675,0.0000355,0.000148556,0.239070398,0.81120897,pos,ns,0.232250277,Tfap2a,Tfap2a_fiveUTR,13,40738285,40738334,40738333,40738334,50,-,ATCTCACCTGGTCATAAAGAGCTGGGTTGCTACCTGCCGACGCATGCGCG,Promoter (<=1kb),13,40716605,40738376,21772,2,Tfap2a-203,42,Tfap2a-202;Tfap2a-203;Tfap2a-208;Tfap2a-206;Tfap2a-204,Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,6,57,21418,ENSMUSG00000021359,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
5123,cg11559504,-0.00000157,0.00000146,-1.074589772,0.283394116,loss,ns,0.00000349,0.00000249,1.40414915,0.161275491,pos,ns,0.001958271,0.000728744,2.687185269,0.007594581,pos,ns,2.119496157,-0.0000681,0.0000251,-2.715916468,0.006980074,neg,ns,0.96754302,Ubxn7,Ubxn7_Exon,16,32381789,32381838,32381789,32381790,50,+,CGGTATCCAGATGGAAAAAGGGAACAGATCACTCTTCCAGAGCAAGCTAA,"Exon (Ubxn7-201/Ubxn7, exon 10 of 11)",16,32332257,32393747,61491,1,Ubxn7-201,49532,Ubxn7-201;Ubxn7-203,Ubxn7;Ubxn7,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,224111,ENSMUSG00000053774,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10997,cg03086565,-0.0000975,0.0000129,-7.582911863,3.96E-13,loss,yes,0.0000307,0.0000218,1.404024484,0.161312578,pos,ns,-0.001746093,0.006398392,-0.272895633,0.785115143,neg,ns,0.105066646,-0.00045588,0.00022004,-2.071803317,0.0391105,neg,ns,0.379891413,Gm12520,Gm12520_Intergenic_upstream,4,56113957,56114006,56113957,56113958,50,-,CGTGCTTTGCCTGCTGACAAGAGCACACCCTGGCCTTGGTTATTGCCCTT,Distal Intergenic,4,56162940,56163255,316,1,Gm12520-201,-48983,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,3,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5081,cg17571655,-0.00000549,0.00000732,-0.750885353,0.453291252,loss,ns,0.0000175,0.0000124,1.403938552,0.161338145,pos,ns,0.00333789,0.003641665,0.916583394,0.360073478,pos,ns,0.443608866,0.0000257,0.000125237,0.205126229,0.837608128,pos,ns,0.757528689,Rhbdf1,Rhbdf1_threeUTR,11,32210456,32210505,32210504,32210505,50,+,AGGTAGATGATGGCTATGCGGTGCCAGCCTGCCAGCTTCTCCAGGTCCCG,3' UTR,11,32209585,32222300,12716,2,Rhbdf1-201,11795,Rhbdf1-201;Rhbdf1-205;Rhbdf1-208;Rhbdf1-206;Rhbdf1-204;Rhbdf1-203;Rhbdf1-202;Rhbdf1-209;Snrnp25-201;Snrnp25-204;Snrnp25-205;Snrnp25-202;Snrnp25-203,Rhbdf1;Rhbdf1;Rhbdf1;Rhbdf1;Rhbdf1;Rhbdf1;Rhbdf1;Rhbdf1;Snrnp25;Snrnp25;Snrnp25;Snrnp25;Snrnp25,0;0;0;0;0;0;0;0;5041;5010;4998;4968;3694,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,2,13650,ENSMUSG00000020282,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27357,cg01253807,0.00004,0.0000086,4.654326303,0.00000482,gain,ns,0.0000205,0.0000146,1.403924003,0.161342474,pos,ns,0.007939742,0.004278459,1.855747909,0.064438417,pos,ns,1.190855139,-0.000210562,0.000147136,-1.431072687,0.15341668,neg,ns,0.1803955,Cdh22,Cdh22_Promoter,2,165242958,165243007,165242958,165242959,50,-,CGGCCTATTTATGTATCTATAGAGAATTAATTGGCGAGCGGCAGCAAGAA,Promoter (8-9kb),2,165111507,165234853,123347,2,Cdh22-201,-8154,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,7,23,104010,ENSMUSG00000053166,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
12955,cg03326159,0.0000908,0.0000187,4.849957144,0.00000196,gain,ns,-0.0000447,0.0000318,-1.403759605,0.161391398,neg,ns,0.021402982,0.009319503,2.296579829,0.022309338,pos,ns,1.651513308,-0.000614711,0.000320497,-1.917992922,0.05603041,neg,ns,0.481113066,Fmr1,Fmr1_threeUTR,X,68717372,68717421,68717372,68717373,50,-,CGACAACAGATTGGATTTTATGTTGACATTTGTTTGGTTATAGTGCAATA,3' UTR,20,68678541,68717963,39423,1,Fmr1-201,38831,Fmr1-201;Fmr1-205;Fmr1-203;Fmr1-204;Fmr1-206;Fmr1-202;Fmr1-208,Fmr1;Fmr1;Fmr1;Fmr1;Fmr1;Fmr1;Fmr1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,8,14265,ENSMUSG00000000838,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23162,cg27386817,-0.00000287,0.000013,-0.221137506,0.825130952,loss,ns,-0.0000309,0.000022,-1.403749244,0.161394482,neg,ns,-0.014467512,0.006457505,-2.240418097,0.025771933,neg,ns,1.588853004,0.000398969,0.000222073,1.796567429,0.073377745,pos,ns,0.850904176,Rnf220,Rnf220_Intron,4,117376196,117376245,117376196,117376197,50,-,CGAGGGGGAGTGAGTGAGAGGGAACGCAACAACACAAAATTTTTCATTTT,"Intron (Rnf220-201/Rnf220, intron 2 of 14)",4,117271463,117497052,225590,2,Rnf220-201,120807,Rnf220-201;Rnf220-202;Rnf220-207,Rnf220;Rnf220;Rnf220,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23109,cg03658879,0.0000246,0.00000532,4.624463548,0.00000552,gain,ns,-0.0000127,0.00000904,-1.403594662,0.161440495,neg,ns,0.003612791,0.002648736,1.36396811,0.173567104,pos,ns,0.760532583,-0.0000996,0.0000911,-1.093077328,0.275208537,neg,ns,0.558477339,Rnf220,Rnf220_Intron,4,117304365,117304414,117304365,117304366,50,+,CGCCAGCGTTTCGGCTTTATCGATCCGACGGGAATTTCACTTGCTGTGCA,"Intron (Rnf220-201/Rnf220, intron 3 of 14)",4,117271463,117497052,225590,2,Rnf220-201,192638,Rnf220-201;Rnf220-202;Rnf220-208;Rnf220-207,Rnf220;Rnf220;Rnf220;Rnf220,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,4,117304190,117304735,546,*,546,58,0.690476191,0.936645963,0.106227106,6.95E-46,CpGisland,TRUE,NA,NRS
25663,cg02789602,0.00000318,0.00000352,0.904962713,0.366187908,gain,ns,-0.00000838,0.00000597,-1.40359125,0.16144151,neg,ns,-0.003806672,0.00174967,-2.175651491,0.030336462,neg,ns,1.518035068,0.000105545,0.0000602,1.754091409,0.080402951,pos,ns,0.837277282,Zkscan1,Zkscan1_Exon,5,138101324,138101373,138101372,138101373,50,+,ACTCGAGAAAAGCCCTACAAGTGCACTAAGTGTGGCAAGGCCTTCACCCG,"Exon (Zkscan1-201/Zkscan1, exon 6 of 6)",5,138085084,138107822,22739,1,Zkscan1-201,16240,Zkscan1-201;Zkscan1-202;Zkscan1-204;Zkscan1-203,Zkscan1;Zkscan1;Zkscan1;Zkscan1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,74570,ENSMUSG00000029729,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9357,cg18581925,-0.0000219,0.00000342,-6.398706537,5.78E-10,loss,yes,-0.00000815,0.0000058,-1.403532638,0.16145896,neg,ns,-0.003110976,0.001700646,-1.829290668,0.068316511,neg,ns,1.165474319,0.000128309,0.0000585,2.193867709,0.028986974,pos,ns,0.925015338,Gm13472,Gm13472_Promoter,2,48380369,48380418,48380417,48380418,50,+,GGGTAATCTGCTGGAATTCCAAGTGTGACAGTCCCAGAGATAACTTCTCG,Promoter (7-8kb),2,48388037,48388350,314,1,Gm13472-201,-7619,NA,NA,NA,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,1,4,108168751,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12718,cg12315391,0.0000963,0.00000756,12.75261812,3.13E-30,gain,yes,-0.000018,0.0000128,-1.403453612,0.161482489,neg,ns,0.006579431,0.003760299,1.749709407,0.081157944,pos,ns,1.090668965,0.000214127,0.000129316,1.655840608,0.098765969,pos,ns,0.272705208,Shox2,Shox2_threeUTR,3,66972941,66972990,66972989,66972990,50,+,AACTTCGCAGAAAAAGGTCAGTTTCAAAACCTGTGAACTTCCCAGCTGCG,3' UTR,3,66971727,66981318,9592,2,Shox2-203,8328,Shox2-203;Shox2-201;Shox2-202;Shox2-204;Shox2-205,Shox2;Shox2;Shox2;Shox2;Shox2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,7,20429,ENSMUSG00000027833,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
25768,cg07189644,0.000102329,0.0000108,9.464030689,7.77E-19,gain,yes,0.0000258,0.0000184,1.403335968,0.16151752,pos,ns,0.018258338,0.005381473,3.392814271,0.000781588,pos,ns,3.10702219,-0.000106861,0.000185068,-0.577411304,0.564080755,neg,ns,0.370602828,Uncx,Uncx_Promoter,5,139537135,139537184,139537183,139537184,50,+,AGCTAAGTTAACCTGATTTCCCTTAATTAAAACATCTTTTCTCGTTTACG,Promoter (6-7kb),5,139543494,139548179,4686,1,Uncx-201,-6310,NA,NA,NA,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,22,88,22255,ENSMUSG00000029546,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
25882,cg02410726,-0.0000235,0.0000063,-3.728703079,0.000228775,loss,ns,0.000015,0.0000107,1.403272231,0.161536502,pos,ns,-0.002292154,0.003134684,-0.731223345,0.465195084,neg,ns,0.332364883,-0.0000528,0.000107802,-0.489583848,0.624774663,neg,ns,0.881493144,Gm19080,Gm19080_Intergenic_downstream,3,140340883,140340932,140340883,140340884,50,-,CGTGCAGAAAATATTGGGGTAATTACCAAGCACCAGGAGGGGGTCTCAGC,Distal Intergenic,3,140506718,140507267,550,2,Gm19080-201,166384,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,100418222,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17481,cg03766252,-0.00000254,0.00000249,-1.020739004,0.308174024,loss,ns,-0.00000592,0.00000422,-1.403257079,0.161541015,neg,ns,-0.00182469,0.001236995,-1.475099332,0.141200726,neg,ns,0.850163069,-0.0000586,0.0000425,-1.376813859,0.169563286,neg,ns,0.064640533,Crebzf,Crebzf_threeUTR,7,90444316,90444365,90444364,90444365,50,-,TTTCCTTCCTGCCAGGCTCCGTTGTAGGGGTTACAGAACAGTCGTTCCCG,3' UTR,7,90442729,90446104,3376,1,Crebzf-201,1587,Crebzf-201;Crebzf-203;Crebzf-204;Crebzf-205;Crebzf-202;Crebzf-208;Crebzf-207;Crebzf-209;Crebzf-206,Crebzf;Crebzf;Crebzf;Crebzf;Crebzf;Crebzf;Crebzf;Crebzf;Crebzf,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,9,233490,ENSMUSG00000051451,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
14535,cg12451785,-0.0000363,0.0000138,-2.629263042,0.00898366,loss,ns,0.0000329,0.0000235,1.403239775,0.161546169,pos,ns,0.04636771,0.0068705,6.748811798,7.33E-11,pos,yes,10.13475213,-0.001402398,0.000236276,-5.93542601,7.84E-09,neg,yes,0.265873306,Ptprd,Ptprd_Intron,4,76369354,76369403,76369402,76369403,50,+,ATGGCTTCATTCTGCTGAAATAAACTTATTTCACTGTGGCAAACAAAACG,"Intron (Ptprd-206/Ptprd, intron 1 of 35)",4,75941238,76449980,508743,2,Ptprd-206,80577,Ptprd-206;Ptprd-213;Ptprd-205,Ptprd;Ptprd;Ptprd,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,32,19266,ENSMUSG00000028399,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20968,cg16960327,-0.00000241,0.000002,-1.201627488,0.230425068,loss,ns,-0.00000477,0.0000034,-1.403196733,0.161558989,neg,ns,0.000417554,0.000996335,0.419089773,0.675440764,pos,ns,0.170412732,-0.00000596,0.0000343,-0.174001664,0.861977727,neg,ns,0.932649321,Zfp326,Zfp326_Exon,5,105888570,105888619,105888570,105888571,50,-,CGGAATAGCCTTGACTCTTTCGGAGGTAGAAACCAGGGCGGGTCTAGCTG,"Exon (Zfp326-201/Zfp326, exon 5 of 12)",5,105876565,105914780,38216,1,Zfp326-209,12005,Zfp326-209;Zfp326-208;Zfp326-201;Zfp326-205;Zfp326-206;Zfp326-202;Zfp326-203;Zfp326-204,Zfp326;Zfp326;Zfp326;Zfp326;Zfp326;Zfp326;Zfp326;Zfp326,0;0;0;0;0;11629;0;-2325,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,11,54367,ENSMUSG00000029290,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5732,cg07676047,0.000129605,0.00000886,14.62785244,3.28E-37,gain,yes,-0.0000211,0.0000151,-1.403181766,0.161563447,neg,ns,0.012202112,0.004409787,2.767052643,0.005996378,pos,ns,2.222111012,-0.000167072,0.000151652,-1.101679206,0.271455776,neg,ns,0.356017731,Sox2,Sox2_Intron,3,34639991,34640040,34639991,34639992,50,+,CGCGCTGTCTTATTTACAGCCCACTGCTTGCTGTAGAGTCTTTGTTAGGA,"Intron (Sox2ot-203/Sox2ot-203, intron 3 of 3)",3,34650405,34652461,2057,1,Sox2-201,-10365,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,34,62,20674,ENSMUSG00000074637,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
10341,cg16657465,-0.00000263,0.00000186,-1.418305211,0.157106161,loss,ns,-0.00000442,0.00000315,-1.40297928,0.161623769,neg,ns,-0.0000062,0.000923623,-0.006717548,0.994644533,neg,ns,0.0023321,-0.00000849,0.0000318,-0.267348487,0.789378633,neg,ns,0.949802181,Ext1,Ext1_Exon,15,53107515,53107564,53107515,53107516,50,-,CGACCACGAGGAACCAGACAGAAAGTGGCATTGTGCAGCATTTCCCGATA,"Exon (Ext1-201/Ext1, exon 2 of 11)",15,53064038,53346159,282122,2,Ext1-201,238595,Ext1-201;Ext1-203;Ext1-202;Ext1-204,Ext1;Ext1;Ext1;Ext1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,16,14042,ENSMUSG00000061731,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9756,cg17771970,-0.000035,0.00000458,-7.639466158,2.74E-13,loss,yes,0.0000109,0.00000778,1.40228135,0.16183182,pos,ns,-0.003379432,0.002278837,-1.482963463,0.139100016,neg,ns,0.85667282,0.0000404,0.0000784,0.51576148,0.606388647,pos,ns,0.948912396,Trps1,Trps1_Exon,15,50664731,50664780,50664731,50664732,50,-,CGCCATTTGCATTCTTTCGCCAGAGAGAGGTCTTTGTGGTCAGGCAATTG,"Exon (Trps1-202/Trps1, exon 5 of 6)",15,50654752,50889691,234940,2,Trps1-202,224911,Trps1-202;Trps1-206;Trps1-204;Trps1-205;Trps1-207;Trps1-201,Trps1;Trps1;Trps1;Trps1;Trps1;Trps1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,36,83925,ENSMUSG00000038679,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15419,cg07841112,0.0000853,0.0000159,5.37866039,0.000000148,gain,yes,-0.0000378,0.0000269,-1.402213148,0.161852162,neg,ns,0.019413427,0.007888824,2.460877077,0.014404558,pos,ns,1.841500068,-0.000707632,0.000271296,-2.608340186,0.009538945,neg,ns,0.462888194,Tnrc6b,Tnrc6b_Exon,15,80876383,80876432,80876383,80876384,50,+,CGCCACCAGTCAATGGTGGCAACAATGCCAAAAGGGTGGCAGTGCCGAAC,"Exon (Tnrc6b-201/Tnrc6b, exon 7 of 25)",15,80711313,80941085,229773,1,Tnrc6b-201,165070,Tnrc6b-201;Tnrc6b-204;Tnrc6b-207;Tnrc6b-208,Tnrc6b;Tnrc6b;Tnrc6b;Tnrc6b,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,20,24,213988,ENSMUSG00000047888,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16128,cg08506462,-0.00000374,0.00000581,-0.643978255,0.520065695,loss,ns,0.0000138,0.00000987,1.401996192,0.161916883,pos,ns,0.002785694,0.002891096,0.963542519,0.336026346,pos,ns,0.47362667,-0.000103916,0.0000994,-1.045178267,0.296754881,neg,ns,0.593318975,Bnc2,Bnc2_Intron,4,84480549,84480598,84480549,84480550,50,-,CGTTAAATTACTGAAAAGGGTGATGTATTTATAATACAGCTTGCGATGCT,"Intron (Bnc2-201/Bnc2, intron 4 of 7)",4,84275095,84675034,399940,2,Bnc2-201,194436,Bnc2-201;Bnc2-202;Bnc2-214;Bnc2-215;Bnc2-206;Bnc2-211;Bnc2-205;Bnc2-217;Bnc2-207;Bnc2-212;Bnc2-203;Bnc2-209;Bnc2-221;Bnc2-204;Bnc2-220;Bnc2-208,Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,91,242509,ENSMUSG00000028487,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11537,cg22277064,0.000127812,0.0000233,5.487032686,0.000000085,gain,yes,-0.0000555,0.0000396,-1.401950038,0.161930654,neg,ns,0.032677287,0.011593381,2.818615823,0.005133253,pos,ns,2.289607305,-0.001122251,0.000398695,-2.814808734,0.005192896,neg,ns,0.257285435,Mtss1,Mtss1_Exon,15,59055057,59055106,59055057,59055058,50,-,CGTCCAAGAAGGCAGCTGCTGCTACTACTGTTGTCCTAAAATGCAAACAG,"Exon (Mtss1-201/Mtss1, exon 3 of 15)",15,58941234,59081989,140756,2,Mtss1-201,26883,Mtss1-201;Mtss1-212;Mtss1-203,Mtss1;Mtss1;Mtss1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,4,211401,ENSMUSG00000022353,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15559,cg20987667,0.00000143,0.00000273,0.522121758,0.601958437,gain,ns,0.00000651,0.00000464,1.401602423,0.1620344,pos,ns,0.003409573,0.001359781,2.507441702,0.012671951,pos,ns,1.897156531,-0.000125365,0.0000468,-2.680879775,0.007735799,neg,ns,0.93253722,Adgrl3,Adgrl3_Exon,5,81787475,81787524,81787523,81787524,50,-,GTCCGCATGGTACTAACAATCCCTATAATACATTGCTTGGGGAACCGGCG,"Exon (Adgrl3-203/Adgrl3, exon 26 of 27)",5,81020571,81796634,776064,1,Adgrl3-223,766904,Adgrl3-223;Adgrl3-203;Adgrl3-211;Adgrl3-217;Adgrl3-232;Adgrl3-207;Adgrl3-205;Adgrl3-206;Adgrl3-208;Adgrl3-212;Adgrl3-213;Adgrl3-214;Adgrl3-215;Adgrl3-216;Adgrl3-209;Adgrl3-218;Adgrl3-219;Adgrl3-204;Adgrl3-210;Adgrl3-201;Adgrl3-202;Adgrl3-220;Adgrl3-229;Adgrl3-235,Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,13,319387,ENSMUSG00000037605,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4720,cg17156558,-8.72E-08,0.00000198,-0.04396304,0.96496217,loss,ns,0.00000472,0.00000337,1.401578549,0.162041528,pos,ns,0.000310087,0.000987494,0.314013721,0.753721824,pos,ns,0.12278891,-0.0000219,0.000034,-0.644287198,0.519865643,neg,ns,0.943862536,Gm28035,Gm28035_Exon,2,30255971,30256020,30255971,30255972,50,+,CGGCAGACCATCATCAAGGTGATCAAGTTCATCCTCATCATCTGCTACAC,"Exon (Lrrc8a-202/Lrrc8a, exon 2 of 3)",2,30240567,30282148,41582,1,Gm28035-201,15404,Gm28035-201;Lrrc8a-202;Lrrc8a-201,Gm28035;Lrrc8a;Lrrc8a,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,,NA,mapped to different genes,2,30255748,30256123,376,*,376,24,0.587765957,0.741617357,0.063829787,5.88E-14,CpGisland,TRUE,U10,Tr-S
973,cg20482374,-0.00000157,0.00000191,-0.822065397,0.411671503,loss,ns,0.00000456,0.00000325,1.401526894,0.162056949,pos,ns,0.001458079,0.000953096,1.529834963,0.127077337,pos,ns,0.895931896,-0.0000433,0.0000328,-1.322572604,0.18695242,neg,ns,0.971219419,Qk,Qk_threeUTR,17,10213361,10213410,10213361,10213362,50,+,CGGTCTGCGGTCACAATCCTTTGGTAAGGATGGACACGCATATCGTGCCT,3' UTR,17,10202601,10319380,116780,2,Qk-204,105970,Qk-204;Qk-202;Qk-203;Qk-201;Qk-206;Qk-205,Qk;Qk;Qk;Qk;Qk;Qk,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,12,17,19317,ENSMUSG00000062078,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22822,cg11276096,0.0000446,0.0000054,8.27104488,3.96E-15,gain,yes,-0.0000128,0.00000917,-1.401508784,0.162062356,neg,ns,0.004736621,0.002685847,1.763548198,0.078793133,pos,ns,1.103511628,-0.000159454,0.0000924,-1.72632729,0.085284851,neg,ns,0.166973054,Faah,Faah_Intron,4,115979541,115979590,115979541,115979542,50,+,CGCAGACACTCGTTTTTAGAGCCGGTAATTGACTCCTTTCAGTTGATAAT,"Intron (Faah-202/Faah, intron 13 of 14)",4,115967145,116017675,50531,2,Faah-202,38085,Faah-202,Faah,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,20,14073,ENSMUSG00000034171,mapped to different genes,4,115979435,115979564,130,*,130,14,0.707692308,0.870396939,0.107692308,1.85E-11,CpGisland,TRUE,NA,NRS
1222,cg20002640,0.000122147,0.0000111,10.96126359,7.58E-24,gain,yes,0.0000265,0.0000189,1.401407112,0.162092714,pos,ns,0.041868202,0.005546262,7.548905007,4.94E-13,pos,yes,12.30652315,-0.000317676,0.000190735,-1.665533301,0.096816592,neg,ns,0.57059632,Bcor,Bcor_Intron,X,12073739,12073788,12073787,12073788,50,+,GTTCCCCTGGTTTGCACCTAGACAATAAATTTAGTTTAATTTAGCTTCCG,"Intron (Bcor-202/Bcor, intron 1 of 14)",20,12036740,12080553,43814,2,Bcor-202,6765,Bcor-202;Bcor-203;Bcor-204;Bcor-206;Bcor-201;Bcor-207;Bcor-205,Bcor;Bcor;Bcor;Bcor;Bcor;Bcor;Bcor,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,56,74,71458,ENSMUSG00000040363,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4429,cg26730535,0.0000451,0.0000114,3.937711128,0.000101641,gain,ns,-0.0000272,0.0000194,-1.401354363,0.162108465,neg,ns,0.013860232,0.005696114,2.433278689,0.015527782,pos,ns,1.808890575,-0.00000484,0.000195889,-0.02470579,0.980305532,neg,ns,0.205886161,Snd1,Snd1_Intron,6,28891702,28891751,28891750,28891751,50,+,GCACTACCCTGGGTGGCATGTGTTTTAATAATTAACGTCCTTCAGATGCG,"Intron (Snd1-206/Snd1, intron 16 of 16)",6,28480359,28935162,454804,1,Snd1-206,411343,Snd1-201;Snd1-206,Snd1;Snd1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,9,56463,ENSMUSG00000001424,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8604,cg26558129,-0.000000528,0.00000378,-0.139682547,0.889001523,loss,ns,0.000009,0.00000642,1.401322278,0.162118047,pos,ns,0.000398182,0.001881949,0.211579633,0.83257403,pos,ns,0.07957714,-0.000041,0.0000647,-0.632748515,0.527364333,neg,ns,0.901214916,Dscaml1,Dscaml1_Intron,9,45433383,45433432,45433431,45433432,50,-,CAAAATAATGGATTGCATTGATTTTTTCATTTCCCACCCCAACTTCTCCG,"Intron (Dscaml1-208/Dscaml1, intron 3 of 5)",9,45426628,45571224,144597,1,Dscaml1-208,6755,Dscaml1-208;Dscaml1-209;Dscaml1-202;Dscaml1-206;Dscaml1-211;Dscaml1-201;Dscaml1-210,Dscaml1;Dscaml1;Dscaml1;Dscaml1;Dscaml1;Dscaml1;Dscaml1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,32,114873,ENSMUSG00000032087,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23098,cg03724450,0.00000332,0.00000408,0.815271341,0.415542928,gain,ns,-0.0000097,0.00000693,-1.401149472,0.16216966,neg,ns,-0.007255813,0.00202918,-3.575736391,0.000404969,neg,ns,3.392577727,0.00025769,0.0000698,3.692709124,0.000262132,pos,ns,0.892525332,Rnf220,Rnf220_Intron,4,117297790,117297839,117297838,117297839,50,-,AAGAAAATAATTCACGGCTTCTTCACCCTTTAATATGATAGCCGCCACCG,"Intron (Rnf220-201/Rnf220, intron 4 of 14)",4,117271463,117497052,225590,2,Rnf220-201,199213,Rnf220-201;Rnf220-202;Rnf220-208,Rnf220;Rnf220;Rnf220,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25174,cg12052770,-0.00000525,0.000015,-0.351050987,0.725788552,loss,ns,0.0000356,0.0000254,1.401146714,0.162170484,pos,ns,0.030642181,0.007444066,4.116322855,0.0000494,pos,ns,4.306224716,-0.000882511,0.000256001,-3.447297617,0.000644446,neg,ns,0.878324932,Wdtc1,Wdtc1_Intron,4,133299890,133299939,133299938,133299939,50,-,GGCACACCAGCTGGCCTGTCTGTCTGGGCAGAGCCGACGGATGCCAGACG,"Intron (Wdtc1-201/Wdtc1, intron 12 of 15)",4,133292459,133339324,46866,2,Wdtc1-201,39385,Wdtc1-201;Wdtc1-202,Wdtc1;Wdtc1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,3,230796,ENSMUSG00000037622,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11555,cg26053179,0.0000761,0.00000638,11.92032786,3.20E-27,gain,yes,-0.0000152,0.0000108,-1.401063965,0.162195204,neg,ns,0.007610408,0.003176197,2.396075711,0.017164168,pos,ns,1.765377249,-0.000186392,0.000109229,-1.70642651,0.08893017,neg,ns,0.117544849,Vax1,Vax1_Promoter,19,59171377,59171426,59171425,59171426,50,-,AAGATGGCAATTATCTAATTGGACTATTAACAAACAGTCCTCTGAGTGCG,Promoter (1-2kb),19,59166187,59170056,3870,2,Vax1-201,-1370,Vax1-201;Vax1-202,Vax1;Vax1,0;-4397,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,12,18,22326,ENSMUSG00000006270,conserved gene and region,19,59171425,59171501,77,*,77,8,0.727272727,0.811594203,0.103896104,0.00000163,CpGisland,TRUE,U13,Hc-P
13413,cg20153826,-0.0000223,0.00000971,-2.301170941,0.022045143,loss,ns,0.0000231,0.0000165,1.401063476,0.16219535,pos,ns,0.006898156,0.004830404,1.428070038,0.154278359,pos,ns,0.811694988,-0.000277423,0.000166117,-1.6700416,0.095920487,neg,ns,0.803985475,Nr2f2,Nr2f2_Intron,7,70381844,70381893,70381844,70381845,50,-,CGTATGGTGCTGACCTCATCAAGTATGGCCTGAAATTAATTAGCCTCATT,"Intron (B130024G19Rik-202/B130024G19Rik-202, intron 1 of 10)",7,70354439,70366735,12297,2,Nr2f2-202,-15158,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,69,11819,ENSMUSG00000030551,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13186,cg22182330,0.00000434,0.00000132,3.28943258,0.001119486,gain,ns,0.00000314,0.00000224,1.401022751,0.162207517,pos,ns,0.000212245,0.000656503,0.323296184,0.746688918,pos,ns,0.126860294,0.00000546,0.0000226,0.241896828,0.809020048,pos,ns,0.971575145,Tcf4,Tcf4_Exon,18,69678088,69678137,69678088,69678089,50,+,CGACAAGAAGGATATCAAATCAATTACTAGGTCAAGATCTAGGTAACAGT,"Exon (Tcf4-201/Tcf4, exon 18 of 21)",18,69344146,69684343,340198,1,Tcf4-201,333942,Tcf4-201;Tcf4-207;Tcf4-240;Tcf4-254;Tcf4-246;Tcf4-206;Tcf4-202;Tcf4-257;Tcf4-248;Tcf4-205;Tcf4-253;Tcf4-238;Tcf4-249;Tcf4-250;Tcf4-226;Tcf4-230;Tcf4-234;Tcf4-258;Tcf4-252;Tcf4-243;Tcf4-204;Tcf4-222;Tcf4-255;Tcf4-203;Tcf4-251;Tcf4-214;Tcf4-211,Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;-4243,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,66,21413,ENSMUSG00000053477,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16316,cg11446193,0.00000755,0.00000228,3.316616364,0.001019445,gain,ns,0.00000542,0.00000387,1.401000245,0.162214241,pos,ns,0.003237064,0.001132668,2.857910559,0.004553018,pos,ns,2.341700587,-0.0000387,0.000039,-0.994776824,0.320620659,neg,ns,0.046977793,Gm19426,Gm19426_Promoter,2,84743741,84743790,84743789,84743790,50,-,GCCGTCCATCTTGAATACTTGGGATTCTTGAATGGAGTGAGCAGGATCCG,Promoter (<=1kb),2,84742169,84743655,1487,2,Gm19426-201,-135,Gm19426-201,Gm19426,-86,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,2,100502874,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
18990,cg11517256,-0.000000877,0.00000683,-0.128471724,0.897858979,loss,ns,0.0000163,0.0000116,1.400927991,0.16223583,pos,ns,0.005730036,0.003398649,1.685974315,0.092806902,pos,ns,1.032419726,-0.000206269,0.000116879,-1.764801652,0.078581751,neg,ns,0.595273595,Nfia,Nfia_threeUTR,4,98116830,98116879,98116878,98116879,50,+,TGTGAAATCTGTATTATATTGCTCTTCTGAAGTAAGATTTTTCTACACCG,3' UTR,4,97777608,98118871,341264,1,Nfia-202,339222,Nfia-202;Nfia-203;Nfia-205;Nfia-201;Nfia-204,Nfia;Nfia;Nfia;Nfia;Nfia,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,8,44,18027,ENSMUSG00000028565,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13471,cg12936357,-0.0000159,0.00000271,-5.872248534,1.11E-08,loss,yes,-0.00000646,0.00000461,-1.400915774,0.162239481,neg,ns,-0.00324316,0.001350636,-2.401208596,0.016929713,neg,ns,1.771350408,-0.0000312,0.0000464,-0.671257838,0.50255615,neg,ns,0.9370067,Xpo7,Xpo7_Intron,14,70684006,70684055,70684054,70684055,50,-,TTTCTGCAGCAAGGGTAAGAGATTTCTGCGGCAGTGATAACATGCAGACG,"Intron (Xpo7-202/Xpo7, intron 15 of 27)",14,70654246,70766628,112383,2,Xpo7-202,82573,Xpo7-202;Xpo7-201;Xpo7-206;Xpo7-203;Xpo7-204;Xpo7-205,Xpo7;Xpo7;Xpo7;Xpo7;Xpo7;Xpo7,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,13,65246,ENSMUSG00000022100,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24367,cg15060871,0.00000032,0.00000149,0.213846505,0.830807339,gain,ns,0.00000356,0.00000254,1.400889354,0.162247375,pos,ns,0.001868543,0.000743733,2.512384281,0.012499392,pos,ns,1.903111114,-0.0000668,0.0000256,-2.61045834,0.009481363,neg,ns,0.957943186,Zfp384,Zfp384_Exon,6,125031282,125031331,125031330,125031331,50,-,AGTTCAGAGCCAAGGTGTGCATTCAACTTCAGGTCCATGGGGAACAGGCG,"Exon (Zfp384-212/Zfp384, exon 9 of 10)",6,125009145,125036180,27036,1,Zfp384-210,22137,Zfp384-210;Zfp384-202;Zfp384-214;Zfp384-208;Zfp384-213;Zfp384-207;Zfp384-201;Zfp384-204;Zfp384-206;Zfp384-212;Zfp384-203;Zfp384-205;Zfp384-215;Zfp384-211,Zfp384;Zfp384;Zfp384;Zfp384;Zfp384;Zfp384;Zfp384;Zfp384;Zfp384;Zfp384;Zfp384;Zfp384;Zfp384;Zfp384,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,6,269800,ENSMUSG00000038346,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2119,cg26965597,0.000000756,0.00000649,0.116526324,0.907310877,gain,ns,0.0000154,0.000011,1.400867964,0.162253767,pos,ns,0.006546982,0.003227659,2.028399661,0.043374127,pos,ns,1.362769252,0.00020689,0.000110999,1.863888286,0.063282593,pos,ns,0.16707032,Bhlhe22,Bhlhe22_Promoter,3,18051881,18051930,18051881,18051882,50,+,CGGGCAGATGTGTTTTCATTGCCCTGTAAGATAAATGCAGTGTTAAGTGC,Promoter (2-3kb),3,18054174,18057517,3344,1,Bhlhe22-201,-2244,Bhlhe22-201,Bhlhe22,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,6,22,59058,ENSMUSG00000025128,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
8304,cg17950891,-0.000000445,0.00000105,-0.423354916,0.672329894,loss,ns,0.0000025,0.00000179,1.400817567,0.162268828,pos,ns,0.000367479,0.000523221,0.702339582,0.482994432,pos,ns,0.316057875,-0.00000432,0.000018,-0.240060708,0.810441857,neg,ns,0.969666212,Zeb2,Zeb2_Exon,2,44994488,44994537,44994488,44994489,50,-,CGTATTTATGTCGCAGAAGGGAACTGCTTTTCTGGAATGTCTTGTCACAT,"Exon (Zeb2-212/Zeb2, exon 10 of 11)",2,44983632,45117395,133764,2,Zeb2-212,122858,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,21,158,24136,ENSMUSG00000026872,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19606,cg20202407,0.0000203,0.00000399,5.084891938,0.000000638,gain,yes,-0.00000951,0.00000679,-1.400719576,0.162298115,neg,ns,-0.004979439,0.001988246,-2.504438877,0.012777819,neg,ns,1.89354327,0.000219488,0.0000684,3.210035897,0.001466304,pos,ns,0.903088381,Hnrnpdl,Hnrnpdl_threeUTR,5,100035690,100035739,100035738,100035739,50,-,CCAGAGATAGACGTGGTCAGGGTGACACACGGCCTGCAATGAAGTTCCCG,Promoter (<=1kb),5,100033577,100036068,2492,2,Hnrnpdl-203,329,Enoph1-202;Enoph1-201;Enoph1-203;Hnrnpdl-203;Hnrnpdl-202;Hnrnpdl-207;Hnrnpdl-201;Hnrnpdl-204;Hnrnpdl-205;Hnrnpdl-206,Enoph1;Enoph1;Enoph1;Hnrnpdl;Hnrnpdl;Hnrnpdl;Hnrnpdl;Hnrnpdl;Hnrnpdl;Hnrnpdl,0;0;0;0;0;0;0;0;0;1384,TRUE,FALSE,TRUE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,8,8,50926,ENSMUSG00000029328,conserved gene and region,5,100035645,100035745,101,*,101,9,0.613861386,0.945889698,0.089108911,0.000001,CpGisland,TRUE,U12,Tr-I
16630,cg08878891,0.000000166,0.00000348,0.047782385,0.961920443,gain,ns,0.00000828,0.00000591,1.400696375,0.16230505,pos,ns,0.003977582,0.001731934,2.296613087,0.022307415,pos,ns,1.651550759,-0.00015992,0.0000596,-2.684970405,0.007643919,neg,ns,0.927000403,Gm49059,Gm49059_Intergenic_downstream,14,85671079,85671128,85671127,85671128,50,+,CATGTGTTCATTATGAGTGAACTTGACCATTGCAATAGTTTCCATAATCG,Distal Intergenic,14,85655204,85655897,694,1,Gm49059-201,15875,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16975,cg21960330,0.00000945,0.00000421,2.243672325,0.02555924,gain,ns,-0.00001,0.00000715,-1.400658442,0.162316388,neg,ns,-0.003136011,0.00209558,-1.496488039,0.135543914,neg,ns,0.867919977,0.0000481,0.0000721,0.666937381,0.505308231,pos,ns,0.848927466,Zfp423,Zfp423_Intron,8,87742170,87742219,87742218,87742219,50,-,ATTCCTGGCCGCATCTGCACGAGGGAAATTAGAGCATTACCTGGTCCCCG,"Intron (Zfp423-203/Zfp423, intron 3 of 5)",8,87661810,87804439,142630,2,Zfp423-203,62220,Zfp423-203;Zfp423-202;Zfp423-201,Zfp423;Zfp423;Zfp423,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,42,53,94187,ENSMUSG00000045333,conserved gene and region,8,87742179,87742302,124,*,124,11,0.64516129,0.853033146,0.088709677,3.88E-08,CpGisland,TRUE,U15,NS
6588,cg10853504,0.0000286,0.00000567,5.052014464,0.000000748,gain,yes,0.0000135,0.00000963,1.400426652,0.162385686,pos,ns,0.008637559,0.002820408,3.062520994,0.002387199,pos,ns,2.622111337,-0.000244238,0.000097,-2.518080303,0.012303124,neg,ns,0.073881558,Gm37013,Gm37013_Exon,18,37807748,37807797,37807796,37807797,50,-,TCTTCCCTCAAGAATTACTTCACTTTGAAAACCAGTGCAGACCTGGATCG,"Exon (Pcdhgc3-203/Pcdhgc3, exon 1 of 1)",18,36969916,37833296,863381,1,Gm37013-201,837832,Gm37013-201;Gm37388-201;Gm42416-201;Pcdhga1-201;Pcdhga10-201;Pcdhga11-201;Pcdhga12-201;Pcdhga2-201;Pcdhga3-201;Pcdhga4-201;Pcdhga5-201;Pcdhga6-201;Pcdhga7-201;Pcdhga8-201;Pcdhga9-201;Pcdhgb1-201;Pcdhgb2-202;Pcdhgb4-202;Pcdhgb5-201;Pcdhgb6-201;Pcdhgb7-201;Pcdhgb8-201;Pcdhgc3-203;Pcdhgc3-201;Pcdhgc3-202,Gm37013;Gm37388;Gm42416;Pcdhga1;Pcdhga10;Pcdhga11;Pcdhga12;Pcdhga2;Pcdhga3;Pcdhga4;Pcdhga5;Pcdhga6;Pcdhga7;Pcdhga8;Pcdhga9;Pcdhgb1;Pcdhgb2;Pcdhgb4;Pcdhgb5;Pcdhgb6;Pcdhgb7;Pcdhgb8;Pcdhgc3;Pcdhgc3;Pcdhgc3,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,14,100384868,ENSMUSG00000103458,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
23933,cg02021454,0.0000193,0.00000662,2.92159277,0.003738273,gain,ns,0.0000158,0.0000113,1.400341149,0.162411254,pos,ns,0.004563714,0.003296157,1.384555981,0.167184029,pos,ns,0.776805213,-0.0000967,0.000113355,-0.853480636,0.394051808,neg,ns,0.550119388,Insig2,Insig2_Exon,1,121224305,121224354,121224353,121224354,50,+,TCAATGTGCCTTGACATTTTAATAGCCTGCCGTCCTGGTGAACACAATCG,"Exon (Gm29359-201/Gm29359-201, exon 1 of 2)",1,121305893,121307318,1426,2,Insig2-206,82964,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,17,72999,ENSMUSG00000003721,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5345,cg05470179,0.000047,0.000012,3.926240692,0.000106367,gain,ns,0.0000285,0.0000204,1.4003081,0.162421137,pos,ns,0.009154657,0.005961976,1.535507206,0.125679255,pos,ns,0.900736404,-0.000183719,0.000205032,-0.896050839,0.370920879,neg,ns,0.488928146,Fam53a,Fam53a_Intergenic_downstream,5,33540491,33540540,33540491,33540492,50,-,CGTGTCCTGATAAAACATCCTTCCCAATTTACGGGGCCGCGCTTGACTAA,Distal Intergenic,5,33600356,33628912,28557,2,Fam53a-203,88421,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,13,13,74504,ENSMUSG00000037339,conserved gene but different region,5,33540480,33540582,103,*,103,10,0.563106796,1.279503106,0.097087379,8.37E-08,CpGisland,TRUE,U13,Hc-P
19633,cg10319365,-0.0000034,0.00000356,-0.953189371,0.341236762,loss,ns,0.00000848,0.00000606,1.400169876,0.162462479,pos,ns,0.003179885,0.001774281,1.792210498,0.074074301,pos,ns,1.130332436,-0.000189447,0.000061,-3.10479749,0.002079885,neg,ns,0.92408878,Gm28267,Gm28267_Intergenic_upstream,9,100203371,100203420,100203419,100203420,50,+,AAAATTAGTTGTAGGACCTCATAATAGTCTATTAATATTTCCTACAGGCG,Distal Intergenic,9,100404495,100404759,265,1,Gm28267-201,-201075,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,29,29,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4106,cg17770608,-0.0000402,0.0000136,-2.948284639,0.003438253,loss,ns,0.0000324,0.0000232,1.39997928,0.162519499,pos,ns,0.007327486,0.006782449,1.080359923,0.280821715,pos,ns,0.551569313,0.000324768,0.000233248,1.392371427,0.164807892,pos,ns,0.438649329,Gm45647,Gm45647_Intergenic_downstream,8,26808487,26808536,26808487,26808488,50,-,CGAGTGACATCTGATTTGTACAAATTTCAAGACTAATAAATCTACCTGTC,Distal Intergenic,8,26780315,26780509,195,1,Gm45647-201,28221,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,62,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8448,cg07511706,0.0000106,0.0000104,1.022226825,0.307470606,gain,ns,-0.0000246,0.0000176,-1.399861087,0.162554865,neg,ns,0.010416946,0.005157315,2.019839064,0.044260078,pos,ns,1.353987829,-0.000178998,0.00017736,-1.009236868,0.313648137,neg,ns,0.03256352,Tlx1,Tlx1_fiveUTR,19,45153506,45153555,45153506,45153507,50,+,CGCCGTATAGGTCACCCCTATCAGAACCGGACGCCCCCCAAGAAGAAGAA,5' UTR,19,45150680,45156943,6264,1,Tlx1-201,2826,Tlx1-201;Tlx1-202,Tlx1;Tlx1,0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,7,21908,ENSMUSG00000025215,conserved gene but different region,19,45153395,45153856,462,*,462,38,0.612554113,0.880794702,0.082251082,8.03E-26,CpGisland,TRUE,U13,Hc-P
381,cg05201130,0.00000239,0.00000564,0.424301564,0.671640199,gain,ns,-0.0000134,0.00000958,-1.399837583,0.162561899,neg,ns,-0.004046988,0.002807661,-1.441409118,0.150478507,neg,ns,0.822525528,-0.0000132,0.0000966,-0.136674462,0.891376834,neg,ns,0.915240511,Pon2,Pon2_Exon,6,5289030,5289079,5289078,5289079,50,+,TGGCAGTGTGGAAGGTCTACAGATTCTACTTCTCTGGAGGCTTTAAGTCG,Promoter (<=1kb),6,5273131,5289068,15938,2,Pon2-203,0,Pon2-201;Pon2-202;Pon2-203,Pon2;Pon2;Pon2,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,330260,ENSMUSG00000032667,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20996,cg21848407,-0.00000948,0.00000522,-1.815981651,0.070339077,loss,ns,-0.0000124,0.00000886,-1.399819641,0.162567268,neg,ns,-0.005127874,0.002597095,-1.974465314,0.049216127,neg,ns,1.307892562,-0.0000295,0.0000893,-0.330639728,0.741139991,neg,ns,0.883077197,Tanc2,Tanc2_threeUTR,11,105923446,105923495,105923494,105923495,50,+,CTTTTATAACAAAACCAACAATGCACAGAATGGCCATTTGCTGGAGGACG,3' UTR,11,105589991,105929304,339314,1,Tanc2-202,333455,Tanc2-202;Tanc2-204;Tanc2-201,Tanc2;Tanc2;Tanc2,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,20,77097,ENSMUSG00000053580,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23915,cg01619693,0.0000723,0.0000118,6.102375035,3.12E-09,gain,yes,0.0000282,0.0000201,1.399715974,0.162598295,pos,ns,0.014703334,0.005895923,2.493813756,0.013158764,pos,ns,1.880784908,-0.0000584,0.00020276,-0.288020312,0.773523655,neg,ns,0.193105026,Insig2,Insig2_Intron,1,121097431,121097480,121097431,121097432,50,-,CGATATGTTGTACTTGAGAGGATAAGATTAAATTTAGTGGGTTTAACTGT,"Intron (Celrr-202/Celrr-202, intron 1 of 4)",1,121305893,121307318,1426,2,Insig2-206,209887,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,17,72999,ENSMUSG00000003721,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11806,cg14381517,-0.0000188,0.00000384,-4.90237469,0.00000153,loss,yes,-0.00000912,0.00000652,-1.399626234,0.162625157,neg,ns,-0.000788246,0.001909813,-0.412734641,0.680086348,neg,ns,0.167435943,-0.0000983,0.0000657,-1.496796524,0.135463633,neg,ns,0.931326228,Rbms1,Rbms1_threeUTR,2,60751441,60751490,60751489,60751490,50,-,AAATGCAAAGGTACAAAAAAGGCACATTCTCCTAACCGCAAACTGGTCCG,3' UTR,2,60750193,60963192,213000,2,Rbms1-201,211702,Rbms1-201;Rbms1-209;Rbms1-202;Rbms1-203;Rbms1-208,Rbms1;Rbms1;Rbms1;Rbms1;Rbms1,0;129948;129980;10831;29451,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,4,56878,ENSMUSG00000026970,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6178,cg08072685,-0.00000565,0.00000366,-1.542688435,0.123926549,loss,ns,0.00000871,0.00000622,1.399528745,0.162654342,pos,ns,0.004237817,0.001822767,2.324936751,0.020720812,pos,ns,1.683593234,-0.000119036,0.0000627,-1.898962249,0.058497713,neg,ns,0.919372165,Rnf19a,Rnf19a_Exon,15,36254455,36254504,36254503,36254504,50,-,ATGTGATTGCAGCTCCCATCATTCATCTTTATTATATAAGCAGCACATCG,"Exon (Rnf19a-201/Rnf19a, exon 4 of 10)",15,36239933,36283147,43215,2,Rnf19a-201,28643,Rnf19a-201;Rnf19a-203,Rnf19a;Rnf19a,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,30945,ENSMUSG00000022280,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24785,cg03184964,0.0000598,0.00000979,6.105996512,3.05E-09,gain,yes,-0.0000233,0.0000166,-1.399429249,0.162684133,neg,ns,0.006709388,0.004871835,1.377178897,0.169450535,pos,ns,0.770957056,-0.000605232,0.000167542,-3.612421799,0.000353757,neg,ns,0.118240675,Smarcc2,Smarcc2_Promoter,10,128458490,128458539,128458490,128458491,50,+,CGGGGAAACCCCATTGGATTTCGAGTCCAACGCCTTAACCACTCGGCCAC,Promoter (<=1kb),10,128459248,128490482,31235,1,Smarcc2-205,-709,Smarcc2-205;Smarcc2-201;Smarcc2-202;Smarcc2-203;Smarcc2-206,Smarcc2;Smarcc2;Smarcc2;Smarcc2;Smarcc2,0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,6,16,68094,ENSMUSG00000025369,conserved gene and region,10,128458453,128458841,389,*,389,38,0.645244216,0.938658877,0.097686375,9.20E-29,CpGisland,TRUE,U2,Pr-W
5479,cg01156435,-0.00000104,0.000000957,-1.088341901,0.27728959,loss,ns,0.00000227,0.00000163,1.39940461,0.16269151,pos,ns,0.000316242,0.000476225,0.664060636,0.507145097,pos,ns,0.294867768,-0.00000046,0.0000164,-0.02807557,0.977619944,neg,ns,0.98711632,Dnajc19,Dnajc19_threeUTR,3,34064187,34064236,34064235,34064236,50,+,ACTGATGCCAGCGAATCTCATCACAGTACTAACCGTCGTAGGCGGTCTCG,3' UTR,3,34056020,34081312,25293,2,Dnajc19-201,17076,Dnajc19-201;Fxr1-201;Fxr1-202;Fxr1-207;Fxr1-206;Fxr1-204;Fxr1-208,Dnajc19;Fxr1;Fxr1;Fxr1;Fxr1;Fxr1;Fxr1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,8,67713,ENSMUSG00000027679,mapped to different genes,3,34064171,34064242,72,*,72,8,0.569444444,1.391304348,0.111111111,0.000000967,CpGisland,TRUE,U10,Tr-S
18213,cg19536104,0.00000247,0.00000229,1.081002681,0.280536155,gain,ns,-0.00000543,0.00000388,-1.39937982,0.162698934,neg,ns,0.001725917,0.001137389,1.517437019,0.130175478,pos,ns,0.88547082,-0.000152774,0.0000391,-3.905783169,0.000115317,neg,ns,0.962580122,Celf3,Celf3_Exon,3,94489548,94489597,94489548,94489549,50,-,CGCCTCAAAGTCCAGCTAAAGCGGCCTAAGGATGCCAACCGGCCCTACTG,"Exon (Celf3-208/Celf3, exon 13 of 14)",3,94478296,94492188,13893,1,Celf3-208,11252,Celf3-214;Celf3-208;Celf3-204;Celf3-215;Celf3-201;Celf3-213;Celf3-212;Celf3-207;Celf3-206;Celf3-211;Celf3-205;Celf3-209;Celf3-210;Celf3-202;Celf3-203,Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Celf3,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,12,78784,ENSMUSG00000028137,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15249,cg22034086,0.00000679,0.00000381,1.781216803,0.075856062,gain,ns,-0.00000906,0.00000648,-1.399299133,0.162723097,neg,ns,-0.002541075,0.001897577,-1.33911588,0.181513996,neg,ns,0.741089882,0.0000867,0.0000653,1.328415654,0.185017931,pos,ns,0.150638245,Suz12,Suz12_Exon,11,79993534,79993583,79993534,79993535,50,+,CGGTGAAGAAGCCGAAAATGGAGCACGTCCAGGCTGACCACGAGCTTTTC,Promoter (<=1kb),11,79993106,80034122,41017,1,Suz12-206,428,Suz12-206;Suz12-201;Suz12-203;Suz12-205;Suz12-202,Suz12;Suz12;Suz12;Suz12;Suz12,0;0;-2003;-2034;-2208,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,52615,ENSMUSG00000017548,conserved gene and region,11,79993216,79993854,639,*,639,75,0.72456964,0.94273743,0.117370892,8.94E-63,CpGisland,TRUE,U1,Pr-A
27063,cg24664143,0.0000413,0.0000111,3.711446475,0.000244234,gain,ns,-0.0000265,0.0000189,-1.399277922,0.162729449,neg,ns,0.033077889,0.005542489,5.968056463,6.56E-09,pos,ns,8.183311716,-0.001483663,0.000190606,-7.783933794,1.06E-13,neg,yes,0.682276762,Blcap,Blcap_Intron,2,157558620,157558669,157558668,157558669,50,-,TGGGCCCTGCCCAGCAGAGATCATGTATCGCCTCCTGGGGCTGCAGCCCG,"Intron (Blcap-202/Blcap, intron 1 of 1)",2,157556362,157566337,9976,2,Blcap-202,7668,Blcap-202;Blcap-201;Blcap-205;Blcap-204;Nnat-205;Nnat-208;Nnat-202;Nnat-210;Nnat-207;Nnat-209;Nnat-206;Nnat-201;Nnat-204;Nnat-203,Blcap;Blcap;Blcap;Blcap;Nnat;Nnat;Nnat;Nnat;Nnat;Nnat;Nnat;Nnat;Nnat;Nnat,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,9,53619,ENSMUSG00000067787,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18436,cg03956465,-0.0000155,0.00000755,-2.056294147,0.040591026,loss,ns,-0.0000179,0.0000128,-1.399152689,0.162766959,neg,ns,0.016727288,0.003757706,4.451462895,0.0000119,pos,ns,4.923979832,-0.000584628,0.000129227,-4.524029686,0.00000865,neg,ns,0.34904582,Ndrg4,Ndrg4_threeUTR,8,95709139,95709188,95709139,95709140,50,-,CGTGGTGAACCAGGCCAACCTGCAGCTCTTCTGGAACATGTACAACAGGT,3' UTR,8,95676980,95709144,32165,1,Ndrg4-207,32159,Ndrg4-207;Ndrg4-201;Ndrg4-210;Ndrg4-202;Ndrg4-203;Ndrg4-211;Ndrg4-206;Ndrg4-205;Ndrg4-209;Ndrg4-204;Ndrg4-208,Ndrg4;Ndrg4;Ndrg4;Ndrg4;Ndrg4;Ndrg4;Ndrg4;Ndrg4;Ndrg4;Ndrg4;Ndrg4,0;0;0;0;0;0;0;0;-719;-1278;-2709,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,2,234593,ENSMUSG00000036564,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25270,cg14192599,-0.00000576,0.00000103,-5.569014747,5.56E-08,loss,yes,-0.00000246,0.00000176,-1.399140133,0.162770721,neg,ns,0.001955794,0.000514338,3.802544995,0.000172463,pos,ns,3.763303017,-0.0000491,0.0000177,-2.773978073,0.005873277,neg,ns,0.98219442,Pdik1l,Pdik1l_Exon,4,134284473,134284522,134284473,134284474,50,-,CGTAACTACCTCGGCCTACCTCCCGTATTAGATCGTACTTTGGCTGGCTA,"Exon (Pdik1l-203/Pdik1l, exon 3 of 4)",4,134275002,134287239,12238,2,Pdik1l-203,2717,Pdik1l-203;Pdik1l-201;Pdik1l-202;Pdik1l-206;Pdik1l-204;Pdik1l-205,Pdik1l;Pdik1l;Pdik1l;Pdik1l;Pdik1l;Pdik1l,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,8,230809,ENSMUSG00000050890,conserved gene and region,4,134284376,134284541,166,*,166,11,0.493975904,1.129251701,0.06626506,0.000000769,CpGisland,TRUE,U10,Tr-S
880,cg14798466,0.0000118,0.0000104,1.144604872,0.253255841,gain,ns,0.0000246,0.0000176,1.39898273,0.162817876,pos,ns,-0.007717903,0.005152305,-1.49795135,0.135163425,neg,ns,0.869140811,0.000298995,0.000177187,1.687449778,0.092522738,pos,ns,0.709488172,Gm7099,Gm7099_Intergenic_upstream,12,9338967,9339016,9339015,9339016,50,+,GTGAAACTTTGACATTGCATTCCATGGGCCCGTGCCACATTTCATCAGCG,Distal Intergenic,12,9429547,9430100,554,1,Gm7099-201,-90531,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,5,633030,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10576,cg24106188,-0.00000342,0.00000157,-2.176896574,0.030242527,loss,ns,-0.00000374,0.00000267,-1.398956868,0.162825625,neg,ns,-0.001100383,0.000782223,-1.406737306,0.160507003,neg,ns,0.794506016,0.0000344,0.0000269,1.277056281,0.202538067,pos,ns,0.961884173,Prmt5,Prmt5_threeUTR,14,54516133,54516182,54516181,54516182,50,+,CACTTTTGAGTCTGGACGAATCCATGGAGAAAGCTTTCCCACAATTAGCG,3' UTR,14,54507187,54517525,10339,2,Prmt5-201,1343,Prmt5-201;Prmt5-206;Prmt5-202;Prmt5-207;Prmt5-204;Prmt5-205;Prmt5-203,Prmt5;Prmt5;Prmt5;Prmt5;Prmt5;Prmt5;Prmt5,0;-2677;0;0;0;-475;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,3,27374,ENSMUSG00000023110,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5950,cg13008977,0.0000406,0.0000122,3.329030624,0.000976581,gain,ns,-0.000029,0.0000207,-1.398858865,0.162854992,neg,ns,0.01356547,0.006071133,2.234421572,0.02616789,pos,ns,1.582231295,-0.000593404,0.000208786,-2.842166729,0.004777924,neg,ns,0.563076756,Slit3,Slit3_Exon,11,35544727,35544776,35544775,35544776,50,+,AGGCAACTGGACAACAACCACATCAGCTGCATTGAAGATGGAGCCTTCCG,"Exon (Slit3-201/Slit3, exon 6 of 36)",11,35121224,35708507,587284,1,Slit3-201,423503,Slit3-201;Slit3-202,Slit3;Slit3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,21,20564,ENSMUSG00000056427,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
10057,cg04091748,-0.00000474,0.00000408,-1.163263265,0.24561732,loss,ns,0.00000969,0.00000692,1.398720622,0.162896423,pos,ns,0.000219869,0.002028653,0.108381575,0.913763132,pos,ns,0.039166368,-0.0000125,0.0000698,-0.179805748,0.857422545,neg,ns,0.042252842,Maml3,Maml3_fiveUTR,3,52104800,52104849,52104800,52104801,50,-,CGACTGCAAAAGTAGATCGGTGAAGTCCTTTGCAAAACGCCGCGCAGAGA,Promoter (<=1kb),3,51685907,52105076,419170,2,Maml3-202,227,Maml3-202,Maml3,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,14,32,433586,ENSMUSG00000061143,conserved gene and region,3,52104757,52105132,376,*,376,44,0.686170213,1.011741683,0.117021277,5.57E-37,CpGisland,TRUE,U1,Pr-A
20080,cg01588659,0.0000206,0.0000085,2.422634197,0.015981281,gain,ns,-0.0000202,0.0000144,-1.398604391,0.162931264,neg,ns,0.002076607,0.004232262,0.490661181,0.624013235,pos,ns,0.204806199,-0.000200389,0.000145547,-1.376799416,0.169567748,neg,ns,0.160790435,Pcbp2,Pcbp2_Exon,15,102484196,102484245,102484196,102484197,50,-,CGGCCCAAGCCGTCCAGCTCTCCGGTCATCTTTGCAGGTGGTCAGGTAAG,"Exon (Pcbp2-220/Pcbp2, exon 8 of 12)",15,102470539,102488880,18342,1,Pcbp2-220,13657,Pcbp2-220;Pcbp2-201;Pcbp2-205;Pcbp2-212;Pcbp2-231;Pcbp2-214;Pcbp2-216;Pcbp2-203;Pcbp2-208;Pcbp2-217;Pcbp2-202;Pcbp2-218;Pcbp2-206;Pcbp2-227;Pcbp2-219;Pcbp2-213;Pcbp2-221;Pcbp2-223;Pcbp2-207;Pcbp2-224;Pcbp2-228;Pcbp2-211;Pcbp2-226;Pcbp2-230;Pcbp2-210;Pcbp2-204;Pcbp2-215;Pcbp2-222;Pcbp2-229,Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2,0;0;0;0;0;0;0;0;13128;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,8,18521,ENSMUSG00000056851,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6089,cg10221809,-7.18E-08,0.00000166,-0.043162566,0.965599733,loss,ns,0.00000395,0.00000282,1.398521764,0.162956035,pos,ns,0.001060266,0.000827414,1.281422482,0.201002977,pos,ns,0.696797509,-0.0000353,0.0000285,-1.241155021,0.215486857,neg,ns,0.032928468,Ttll11,Ttll11_Intergenic_upstream,2,36011609,36011658,36011657,36011658,50,+,ATCAGGGCCTTATTCATTAGCGCATAAACAATTTTGTTTCTCGGCACTCG,Distal Intergenic,2,35902351,35979913,77563,2,Ttll11-203,-31696,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,7,74410,ENSMUSG00000026885,mapped to different genes,2,36011629,36011763,135,*,135,19,0.644444444,1.364361702,0.140740741,7.09E-18,CpGisland,TRUE,U3,Pr-B
21176,cg21233822,-0.00000239,0.00000144,-1.667678944,0.096389271,loss,ns,0.00000341,0.00000244,1.398516038,0.162957752,pos,ns,0.000787918,0.00071424,1.103156053,0.270815028,pos,ns,0.56732724,0.000000905,0.0000246,0.036828087,0.970645783,pos,ns,0.951278917,Zfp644,Zfp644_Intron,5,106632967,106633016,106632967,106632968,50,+,CGCGTAAGTGGTTGGACAGGCTAACAGCACTTGTAAACGTCGTATTGCAA,"Intron (Gm28039-201/Gm28039-201, intron 1 of 2)",5,106616739,106696830,80092,2,Zfp644-204,63814,Zfp644-204;Zfp644-201;Zfp644-205;Zfp644-203;Zfp644-208;Zfp644-209;Zfp644-213,Zfp644;Zfp644;Zfp644;Zfp644;Zfp644;Zfp644;Zfp644,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,10,52397,ENSMUSG00000049606,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12470,cg00627626,-0.00000104,0.0000051,-0.203994817,0.838491402,loss,ns,-0.0000121,0.00000866,-1.398476139,0.162969714,neg,ns,-0.00385432,0.002535995,-1.519845112,0.12956915,neg,ns,0.887498389,-0.0000662,0.0000872,-0.75874584,0.448581102,neg,ns,0.890282938,Amd-ps3,Amd-ps3_Intergenic_downstream,18,64443591,64443640,64443639,64443640,50,+,CACTGTTTCAAAGTGGGATATCTCCTTTTAGCCAATATCCCTCCTCAGCG,Distal Intergenic,18,64448685,64449689,1005,2,Amd-ps3-201,6049,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,100043304,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7189,cg09522001,0.0000899,0.0000192,4.687373734,0.00000415,gain,ns,-0.0000456,0.0000326,-1.398457369,0.162975342,neg,ns,0.021466565,0.00954718,2.248471737,0.025248341,pos,ns,1.597767146,-0.000791347,0.000328327,-2.41024228,0.016523934,neg,ns,0.301740602,Jade1,Jade1_fiveUTR,3,41581214,41581263,41581262,41581263,50,+,GGAGATCATGAAACGAGGTCGCCTTCCCAGCAGCAGTGAGGATTCTGACG,5' UTR,3,41555731,41616864,61134,1,Jade1-201,25483,Jade1-201;Jade1-210;Jade1-214;Jade1-202;Jade1-209;Jade1-204;Jade1-203;Jade1-211;Jade1-206;Jade1-212,Jade1;Jade1;Jade1;Jade1;Jade1;Jade1;Jade1;Jade1;Jade1;Jade1,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,16,269424,ENSMUSG00000025764,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
16736,cg26979786,0.0000309,0.00000417,7.404095665,1.26E-12,gain,yes,-0.00000991,0.00000709,-1.398393943,0.16299436,neg,ns,-0.000345537,0.002076001,-0.16644356,0.867916403,neg,ns,0.061522104,-0.0000453,0.0000714,-0.634109418,0.526477042,neg,ns,0.79517406,Med13,Med13_Exon,11,86355318,86355367,86355366,86355367,50,+,CCCCACCAAAATATCCACAATTCTCTTCTTCCAGGTCTTTGATCTCGCCG,"Exon (Med13-201/Med13, exon 2 of 30)",11,86267033,86357602,90570,2,Med13-201,2235,Med13-201,Med13,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,12,327987,ENSMUSG00000034297,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14901,cg21403130,-0.00000168,0.0000018,-0.933330599,0.351375675,loss,ns,0.00000428,0.00000306,1.398263434,0.163033499,pos,ns,0.001673426,0.000897485,1.864572761,0.063186197,pos,ns,1.199377784,-0.0000404,0.0000309,-1.309571252,0.191310635,neg,ns,0.959325089,Fam222b,Fam222b_Exon,11,78153743,78153792,78153743,78153744,50,+,CGAATTGGATGCGTATGCTAAGAAGGTCGCAAACAACCCACTGACTATAA,"Exon (Fam222b-201/Fam222b, exon 3 of 3)",11,78094660,78156700,62041,1,Fam222b-201,59083,Fam222b-201;Fam222b-202;Fam222b-203;Gm12571-201;Traf4-203,Fam222b;Fam222b;Fam222b;Gm12571;Traf4,0;0;0;-4305;11797,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,21,216971,ENSMUSG00000037750,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4644,cg03566885,-0.000000646,0.00000271,-0.238217962,0.811869429,loss,ns,-0.00000644,0.00000461,-1.398230072,0.163043505,neg,ns,-0.00354281,0.001349548,-2.625183677,0.009089592,neg,ns,2.041455601,0.0000104,0.0000464,0.224282602,0.822685162,pos,ns,0.883155108,Sptan1,Sptan1_Exon,2,30028654,30028703,30028654,30028655,50,-,CGTCGGGTCATTCGTGTCTATCAGTATGAAGTTGGGGATGATCTGTCTGG,"Exon (Sptan1-205/Sptan1, exon 51 of 57)",2,29965560,30031448,65889,1,Sptan1-205,63094,Sptan1-205;Sptan1-204;Sptan1-203;Sptan1-202;Sptan1-201;Sptan1-208;Sptan1-212;Sptan1-207;Sptan1-213;Sptan1-214;Wdr34-201;Wdr34-202,Sptan1;Sptan1;Sptan1;Sptan1;Sptan1;Sptan1;Sptan1;Sptan1;Sptan1;Sptan1;Wdr34;Wdr34,0;0;0;0;0;0;6833;0;0;-1606;20178;3802,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,7,20740,ENSMUSG00000057738,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
842,cg18691948,0.0000309,0.00000349,8.865477419,6.11E-17,gain,yes,0.00000829,0.00000593,1.398085075,0.163086999,pos,ns,0.007189769,0.001736821,4.139615521,0.0000449,pos,ns,4.347903435,-0.0000985,0.0000597,-1.649499741,0.100058182,neg,ns,0.041033223,Nxph1,Nxph1_Intron,6,8956158,8956207,8956158,8956159,50,-,CGACTCTGCTTGAAGGAATGTGACAATAAAGTGGGAAACCAAAGCTTGGC,"Intron (Nxph1-202/Nxph1, intron 2 of 2)",6,8948614,9249032,300419,1,Nxph1-202,7544,Nxph1-203;Nxph1-202;Nxph1-201,Nxph1;Nxph1;Nxph1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,12,18231,ENSMUSG00000046178,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
11411,cg06315860,-0.00000443,0.00000264,-1.679085235,0.09414302,loss,ns,-0.00000626,0.00000448,-1.398022406,0.1631058,neg,ns,-0.000989533,0.001311656,-0.75441494,0.451172796,neg,ns,0.345657095,-0.00000452,0.0000451,-0.100124524,0.920310185,neg,ns,0.962198719,Larp1,Larp1_Exon,11,58042555,58042604,58042603,58042604,50,+,GATGGGGCTGGTGGGGCGCGGGCTTCCTTCCGTGGCCGTGGACGGGGGCG,"Exon (Larp1-201/Larp1, exon 6 of 19)",11,58009064,58062031,52968,1,Larp1-201,33491,Larp1-201;Larp1-203;Larp1-202,Larp1;Larp1;Larp1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,6,73158,ENSMUSG00000037331,conserved gene but different region,11,58042524,58042798,275,*,275,19,0.610909091,0.780433159,0.069090909,8.76E-12,CpGisland,TRUE,U10,Tr-S
7813,cg16396480,0.0000638,0.0000135,4.724887856,0.0000035,gain,ns,0.0000321,0.0000229,1.398003581,0.163111448,pos,ns,0.018785229,0.006723341,2.794031639,0.005529622,pos,ns,2.257304577,-0.000225484,0.000231215,-0.975212203,0.330215378,neg,ns,0.494666985,Gtdc1,Gtdc1_Intergenic_downstream,2,44410058,44410107,44410058,44410059,50,-,CGCTAGAGCAATTGACACAGCTCTTGAGACAATAATTGGGTTATCAAAGA,Distal Intergenic,2,44565133,44571347,6215,2,Gtdc1-207,161289,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,43,227835,ENSMUSG00000036890,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19085,cg01293647,0.000106931,0.00000813,13.15051189,1.08E-31,gain,yes,-0.0000193,0.0000138,-1.39799575,0.163113797,neg,ns,0.006610697,0.004047058,1.633457612,0.103387963,pos,ns,0.985530021,-0.0000634,0.000139178,-0.45545225,0.649102752,neg,ns,0.214648233,Neurod2,Neurod2_Promoter,11,98329668,98329717,98329716,98329717,50,-,GGCACGTCACGGGCAGCAGCTATCACATGAGAGACGGTGATTGGCATGCG,Promoter (<=1kb),11,98325415,98329648,4234,2,Neurod2-201,-69,Neurod2-201,Neurod2,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,22,18013,ENSMUSG00000038255,conserved gene but different region,11,98329512,98329756,245,*,245,22,0.657142857,0.835658915,0.089795918,5.08E-16,CpGisland,TRUE,U13,Hc-P
4055,cg19319707,0.000000445,0.00000622,0.071485553,0.943057418,gain,ns,0.0000148,0.0000106,1.397978881,0.163118859,pos,ns,-0.001933135,0.00309712,-0.624171776,0.532973836,neg,ns,0.273294111,0.0000917,0.00010651,0.860929414,0.389942303,pos,ns,0.774102622,Gm45647,Gm45647_Intergenic_upstream,8,26677551,26677600,26677599,26677600,50,-,TTCCTGTAATTTCATAAAGTGCAAATTTGCTGTCCTGCTCCCAAATGCCG,Distal Intergenic,8,26780315,26780509,195,1,Gm45647-201,-102764,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,46,62,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13204,cg08188894,0.0000892,0.00000987,9.046023974,1.67E-17,gain,yes,-0.0000234,0.0000168,-1.397949614,0.16312764,neg,ns,0.006745693,0.004910152,1.373825753,0.170488363,pos,ns,0.768305259,-0.000220454,0.00016886,-1.305548134,0.192674336,neg,ns,0.051872851,Foxb1,Foxb1_Exon,9,69760080,69760129,69760080,69760081,50,+,CGCTGCGTGTTCTCCCTGTAGTAGGGGAAGCGGTCCATGATGAACTTGTA,Promoter (<=1kb),9,69757710,69760940,3231,2,Foxb1-201,811,Foxb1-201,Foxb1,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,21,64290,ENSMUSG00000059246,conserved gene and region,9,69759718,69760297,580,*,580,54,0.643103448,0.909407666,0.093103448,1.93E-39,CpGisland,TRUE,U13,Hc-P
8494,cg03815476,0.00000425,0.00000204,2.078656376,0.038471125,gain,ns,-0.00000485,0.00000347,-1.397907823,0.16314018,neg,ns,0.000936659,0.001016758,0.92122077,0.357651525,pos,ns,0.446539919,0.0000118,0.000035,0.336483779,0.736733742,pos,ns,0.04861266,Lbx1,Lbx1_Intergenic_downstream,19,45229341,45229390,45229389,45229390,50,-,TTTTTCTCCTGAACTAAAATACACTTAAGTCTTTGGGATTAATTACCACG,Distal Intergenic,19,45232684,45235812,3129,2,Lbx1-201,6471,Lbx1-201,Lbx1,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,30,50,16814,ENSMUSG00000025216,mapped to different genes,19,45229389,45229613,225,*,225,22,0.635555556,0.968688845,0.097777778,7.42E-17,CpGisland,TRUE,U13,Hc-P
19496,cg25863673,-0.00000348,0.00000202,-1.7238727,0.085727799,loss,ns,0.00000479,0.00000343,1.397667821,0.163212209,pos,ns,-0.0000634,0.001003564,-0.063184489,0.949660317,neg,ns,0.022431709,0.000075,0.0000345,2.171858917,0.030624145,pos,ns,0.96357761,Foxn3,Foxn3_Intron,12,99457971,99458020,99457971,99457972,50,-,CGATATCAGAAACCTGCAAGCTACTATTTCTGCAACTGTGTCACTGTAGA,"Intron (Foxn3-205/Foxn3, intron 1 of 2)",12,99388345,99563508,175164,2,Foxn3-205,105488,Foxn3-205;Foxn3-214;Foxn3-213;Foxn3-210,Foxn3;Foxn3;Foxn3;Foxn3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,17,71375,ENSMUSG00000033713,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10187,cg01639959,0.000025,0.00000368,6.801926724,5.33E-11,gain,yes,0.00000873,0.00000624,1.39755894,0.163244894,pos,ns,0.00220241,0.001829247,1.203998096,0.229508827,pos,ns,0.639200607,0.0000499,0.0000629,0.792609543,0.4286115,pos,ns,0.086159825,Hoxa7,Hoxa7_fiveUTR,6,52217398,52217447,52217446,52217447,50,+,GAACTCATAATTTTGACCTGTGATTTGTTGTCCGGCAGCTTTCAGTGTCG,5' UTR,6,52214491,52220393,5903,2,Hoxa7-205,2946,Gm28308-201;Hoxa3-201;Hoxa3-203;Hoxa7-205;Hoxa7-201;Hoxa7-202;Hoxa7-204;Hoxa7-203,Gm28308;Hoxa3;Hoxa3;Hoxa7;Hoxa7;Hoxa7;Hoxa7;Hoxa7,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,9,10,15404,ENSMUSG00000038236,conserved gene and region,6,52217250,52217463,214,*,214,20,0.546728972,1.271538919,0.093457944,5.89E-15,CpGisland,TRUE,U3,Pr-B
20752,cg03937463,-0.000000203,0.00000241,-0.084191127,0.932958815,loss,ns,-0.00000573,0.0000041,-1.397533574,0.163252509,neg,ns,-0.001857028,0.0012017,-1.545334023,0.123285699,neg,ns,0.909087299,0.0000764,0.0000413,1.847572165,0.065616831,pos,ns,0.924758775,Rgs7bp,Rgs7bp_Exon,13,104982945,104982994,104982993,104982994,50,-,CAGCTGGATGTAAAGCCGACAGATTTCTGGATGGATCTCACCATCTTCCG,"Exon (Rgs7bp-201/Rgs7bp, exon 3 of 6)",13,104945904,105054930,109027,2,Rgs7bp-201,71936,Rgs7bp-201,Rgs7bp,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,7,52882,ENSMUSG00000021719,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22022,cg19014505,-0.00000563,0.00000218,-2.588179324,0.0101029,loss,ns,0.00000517,0.0000037,1.397500751,0.163262364,pos,ns,0.001984335,0.001083159,1.831989362,0.067912307,pos,ns,1.168051516,-0.000100717,0.0000372,-2.703840696,0.007232668,neg,ns,0.947127156,Elavl4,Elavl4_threeUTR,4,110205407,110205456,110205455,110205456,50,-,AGATATGAAGATCATCTGTTTATAGCCCATCCTTCAAAAAACAGTCTACG,3' UTR,4,110203722,110287527,83806,2,Elavl4-204,82071,Elavl4-204;Elavl4-201;Elavl4-203;Elavl4-202;Elavl4-205;Elavl4-206;Elavl4-207;Elavl4-211,Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,8,36,15572,ENSMUSG00000028546,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17717,cg21249921,-0.00000773,0.00000232,-3.339702976,0.000941079,loss,ns,0.0000055,0.00000393,1.397393955,0.16329443,pos,ns,0.002178241,0.001152655,1.889760194,0.059722892,pos,ns,1.223859172,-0.0000231,0.0000396,-0.582153691,0.560886297,neg,ns,0.083369801,Ssbp2,Ssbp2_Promoter,13,91460796,91460845,91460796,91460797,50,-,CGGCGGAGAGAACAGCCAGTTGTTTAAAATCCTTCTAGAGCAGTTTCTAA,Promoter (<=1kb),13,91460283,91688866,228584,1,Ssbp2-209,513,Ssbp2-209;Ssbp2-201;Ssbp2-202;Ssbp2-206;Ssbp2-204;Ssbp2-208;Ssbp2-210;Ssbp2-207,Ssbp2;Ssbp2;Ssbp2;Ssbp2;Ssbp2;Ssbp2;Ssbp2;Ssbp2,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,3,18,66970,ENSMUSG00000003992,conserved gene and region,13,91460385,91460800,416,*,416,49,0.745192308,0.854460094,0.117788462,2.77E-41,CpGisland,TRUE,U1,Pr-A
22339,cg04598984,-0.00000228,0.000000597,-3.826933152,0.000156943,loss,ns,-0.00000142,0.00000101,-1.397224423,0.163345344,neg,ns,-0.00059387,0.000296888,-2.000314223,0.046338295,neg,ns,1.334059947,0.00000398,0.0000102,0.390134843,0.696704764,pos,ns,0.990928424,Brpf1,Brpf1_Exon,6,113317643,113317692,113317691,113317692,50,+,CAACATCTTCAGCGAGCCGGTCCCTCTGTCTGAGGTAACCGAATTGGACG,"Exon (Brpf1-204/Brpf1, exon 6 of 14)",6,113307137,113324857,17721,1,Brpf1-204,10506,Brpf1-204;Brpf1-209;Brpf1-203;Brpf1-202;Brpf1-201;Brpf1-210;Brpf1-208;Brpf1-205;Brpf1-207;Brpf1-206,Brpf1;Brpf1;Brpf1;Brpf1;Brpf1;Brpf1;Brpf1;Brpf1;Brpf1;Brpf1,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,16,78783,ENSMUSG00000001632,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8484,cg01756262,0.0000241,0.00000993,2.430591294,0.015641189,gain,ns,0.0000236,0.0000169,1.397113765,0.163378583,pos,ns,0.009723928,0.00494028,1.968295111,0.049924928,pos,ns,1.301682554,-0.00017979,0.000169896,-1.058234281,0.290772538,neg,ns,0.153423259,Lbx1,Lbx1_Intergenic_downstream,19,45225989,45226038,45226037,45226038,50,+,GCAAATTAATACATATATCAATTTTGTCAGAAACATGCTTAGTTCAATCG,Distal Intergenic,19,45232684,45235812,3129,2,Lbx1-201,9774,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,30,50,16814,ENSMUSG00000025216,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
1351,cg24787530,-0.00000311,0.00000256,-1.216136322,0.224858205,loss,ns,-0.00000608,0.00000435,-1.397085973,0.163386932,neg,ns,-0.000976717,0.001274584,-0.766302245,0.444079602,neg,ns,0.352539175,0.0000545,0.0000438,1.243168958,0.21474497,pos,ns,0.919811421,Gm11847,Gm11847_Intergenic_downstream,4,12422018,12422067,12422018,12422019,50,-,CGCGTGCAGCCATTTTGTCATCGCTTTGGGTCATCCTTGCTCACAATTGG,Distal Intergenic,4,12232833,12233951,1119,1,Gm11847-201,189234,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,8,545592,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25000,cg11111377,-0.0000583,0.0000106,-5.516187477,7.31E-08,loss,yes,0.0000251,0.000018,1.39703493,0.163402267,pos,ns,0.010598262,0.005264162,2.013285761,0.044948618,pos,ns,1.347283654,-0.000608649,0.000181034,-3.362070853,0.000870533,neg,ns,0.737583562,Fgfr2,Fgfr2_Intron,7,131465054,131465103,131465054,131465055,50,+,CGCCAGTCCCAGCTTAATGAATGTAATTGCTACCTTTGATGAAAATACTA,"Intron (Fgfr2-217/Fgfr2, intron 2 of 6)",7,130162451,133123350,2960900,2,Fgfr2-217,1658247,Fgfr2-217,Fgfr2,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,58,79,14183,ENSMUSG00000030849,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20567,cg21177673,0.0000892,0.00000873,10.22053355,2.53E-21,gain,yes,-0.0000207,0.0000148,-1.396706351,0.163501005,neg,ns,0.013392312,0.004343571,3.083249347,0.002231649,pos,ns,2.651374082,-0.000361631,0.000149375,-2.420960082,0.01605366,neg,ns,0.137403366,Dab1,Dab1_Exon,4,103619452,103619501,103619452,103619453,50,+,CGGTAGTGATGTATAAGGTATGAAAGATGTGGCCTGCAGAGAGCCGGCAC,Promoter (<=1kb),4,103619359,104178521,559163,1,Dab1-205,93,Dab1-205;Dab1-202,Dab1;Dab1,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,13,13131,ENSMUSG00000028519,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
7426,cg06343015,-0.0000183,0.0000066,-2.774579593,0.005862693,loss,ns,0.0000157,0.0000112,1.396544388,0.163549692,pos,ns,-0.004606395,0.003287138,-1.40133909,0.162113026,neg,ns,0.790182087,0.00000185,0.000113044,0.016392536,0.98693178,pos,ns,0.92502223,Gabrb2,Gabrb2_Exon,11,42602179,42602228,42602227,42602228,50,+,ACCTCTCCCCAACTAGACGGACTACCAATTACGATTTCTCTCTGTATACG,"Exon (Gabrb2-205/Gabrb2, exon 9 of 10)",11,42419757,42629028,209272,1,Gabrb2-201,182422,Gabrb2-201;Gabrb2-205,Gabrb2;Gabrb2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,5,14401,ENSMUSG00000007653,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7284,cg15886974,-0.00000321,0.00000118,-2.721439014,0.006867232,loss,ns,0.00000279,0.000002,1.396491223,0.163565676,pos,ns,0.001062524,0.000586199,1.8125664,0.070865976,pos,ns,1.149562224,-0.0000346,0.0000202,-1.716596619,0.087051805,neg,ns,0.036235358,Hivep1,Hivep1_Promoter,13,42052889,42052938,42052889,42052890,50,-,CGAAGCGCTTTGTTCAGTGCAGCGTTGCAGAGGGGTTTTCCCAGGCTCCG,Promoter (<=1kb),13,42052021,42185026,133006,1,Hivep1-201,868,Hivep1-201;Hivep1-202,Hivep1;Hivep1,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,4,6,110521,ENSMUSG00000021366,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
14409,cg10169109,0.0000712,0.0000142,5.025828747,0.000000849,gain,yes,-0.0000336,0.0000241,-1.396358703,0.163605523,neg,ns,0.023423087,0.007048809,3.322985301,0.000997241,pos,ns,3.001200039,-0.000666719,0.000242408,-2.750400462,0.006301991,neg,ns,0.256560091,Tlcd2,Tlcd2_Exon,11,75463765,75463814,75463813,75463814,50,-,CCAGCTAAAGCTGCCAGTTGAAGAACTGTTGCCCTCTGCCCCTGGCTTCG,"Exon (Mir22hg-202/Mir22hg-202, exon 2 of 3)",11,75461715,75469663,7949,1,Tlcd2-203,2050,Tlcd2-203;Tlcd2-201;Tlcd2-202;Tlcd2-204,Tlcd2;Tlcd2;Tlcd2;Tlcd2,0;-4265;-4265;-4897,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,6,380712,ENSMUSG00000038217,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9920,cg02148584,-0.00000335,0.00000317,-1.057667753,0.29103042,loss,ns,0.00000751,0.00000538,1.396323354,0.163616153,pos,ns,0.001994529,0.001575438,1.266015637,0.206458048,pos,ns,0.685168183,-0.000107227,0.0000542,-1.979116204,0.048687483,neg,ns,0.924519381,Ppargc1a,Ppargc1a_Intergenic_upstream,5,51587374,51587423,51587374,51587375,50,+,CGCAGGCCATGTGTTTATAAGTCAACAGCTTAAAATGAAAACATCTGATG,Distal Intergenic,5,51495780,51567726,71947,2,Ppargc1a-202,-19648,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,13,19017,ENSMUSG00000029167,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26607,cg05015154,-0.00000368,0.00000155,-2.367088556,0.018542693,loss,ns,0.00000369,0.00000264,1.396120649,0.163677122,pos,ns,0.001458532,0.000773556,1.885490968,0.060298527,pos,ns,1.2196933,-0.0000362,0.0000266,-1.361102308,0.174469937,neg,ns,0.970918936,Pex14,Pex14_Exon,4,148984548,148984597,148984548,148984549,50,-,CGAAAACAGACAGGGAAACAAAAAACTAATTATTGGGTGAGACGACTAAT,"Exon (Gm17029-202/Gm17029-202, exon 3 of 3)",4,148960535,149099876,139342,2,Pex14-201,115279,Pex14-201;Pex14-202;Pex14-205;Pex14-203,Pex14;Pex14;Pex14;Pex14,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,48,56273,ENSMUSG00000028975,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7452,cg17322734,0.0000087,0.00000186,4.670665275,0.00000448,gain,ns,-0.00000442,0.00000316,-1.396116842,0.163678267,neg,ns,-0.0000473,0.000926819,-0.051027786,0.959336243,neg,ns,0.018029148,-0.00000417,0.0000319,-0.130871433,0.895961901,neg,ns,0.046508804,Pou3f3,Pou3f3_Exon,1,42693480,42693529,42693480,42693481,50,+,CGTTTCATCAGGCCACCTGAGACTGCTTTTGAAAGCGTGTACTGTGAAAT,Promoter (1-2kb),1,42694925,42703176,8252,1,Pou3f3-202,-1396,Pou3f3-202;Pou3f3-201,Pou3f3;Pou3f3,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,37,18993,ENSMUSG00000045515,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
19160,cg25392099,-0.0000178,0.00000645,-2.763678694,0.006057193,loss,ns,0.0000153,0.000011,1.395976909,0.163720365,pos,ns,0.003611929,0.003208767,1.125643953,0.26118696,pos,ns,0.583048509,-0.000281015,0.000110349,-2.546593137,0.011361317,neg,ns,0.847234873,Gm27034,Gm27034_Promoter,14,98708229,98708278,98708229,98708230,50,+,CGAAAAAGCAAACGAGGCCACAAAGGACTGTTCTTTGACCATGTAATCAA,Promoter (6-7kb),14,98714813,98715752,940,1,Gm27034-201,-6535,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,5,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26044,cg22398409,-0.0000053,0.00000204,-2.600988007,0.009741253,loss,ns,0.00000483,0.00000346,1.39596694,0.163723365,pos,ns,0.000176036,0.001014227,0.173566945,0.862319092,pos,ns,0.064331999,-0.00000752,0.0000349,-0.21567488,0.829383017,neg,ns,0.946125827,Gm2574,Gm2574_Exon,3,143411414,143411463,143411462,143411463,50,-,CAGCAGCAAAACGGTTTCAATTTTCTGGATTATTAATTCAAATTCACACG,"Exon (1700001N15Rik-201/1700001N15Rik-201, exon 2 of 2)",3,142962611,142963612,1002,1,Gm2574-201,448852,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,19,100040053,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18450,cg13644618,-0.00000371,0.00000249,-1.49044163,0.137124915,loss,ns,0.00000591,0.00000423,1.395899762,0.163743578,pos,ns,0.002760863,0.00124019,2.226160648,0.026722014,pos,ns,1.573130806,-0.000131336,0.0000427,-3.079375475,0.002259991,neg,ns,0.93806209,Cnot1,Cnot1_Exon,8,95765089,95765138,95765089,95765090,50,+,CGAATTTGAAATCCAGGATGGTCCAGTTCATAAGTTACTTCCTTGAAATT,"Exon (Cnot1-202/Cnot1, exon 11 of 49)",8,95719451,95807462,88012,2,Cnot1-202,42324,Cnot1-202;Cnot1-201;Cnot1-203;Cnot1-216;Cnot1-205;Cnot1-217;Cnot1-207;Cnot1-214;Cnot1-209,Cnot1;Cnot1;Cnot1;Cnot1;Cnot1;Cnot1;Cnot1;Cnot1;Cnot1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,24,234594,ENSMUSG00000036550,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10834,cg11208494,0.0000073,0.00000709,1.030093716,0.303769027,gain,ns,-0.0000168,0.000012,-1.39553843,0.163852333,neg,ns,-0.00002,0.003528007,-0.0056606,0.99548716,neg,ns,0.001964337,0.000205504,0.000121328,1.693790212,0.091309596,pos,ns,0.690863851,Fam193b,Fam193b_fiveUTR,13,55569765,55569814,55569813,55569814,50,+,AGCCTCCCAGAGTCCCCTGCTGCCCGATGCAGTGTCTGCAGAGCCAAACG,5' UTR,13,55539316,55571100,31785,2,Fam193b-206,1286,Fam193b-206;Fam193b-201;Fam193b-203;Tmed9-203,Fam193b;Fam193b;Fam193b;Tmed9,0;0;0;-3918,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,11,212483,ENSMUSG00000021495,conserved gene and region,13,55569789,55569856,68,*,68,8,0.647058824,1.185185185,0.117647059,0.000000614,CpGisland,TRUE,U4,Pr-F
22539,cg17086562,-0.00000226,0.00000373,-0.605355884,0.545385461,loss,ns,0.00000885,0.00000634,1.3952073,0.163952046,pos,ns,0.004817325,0.00185877,2.591673884,0.01000306,pos,ns,1.999867131,-0.000166011,0.0000639,-2.597048685,0.009851223,neg,ns,0.924165423,Wwox,Wwox_Intron,8,115035495,115035544,115035543,115035544,50,+,AATAGATTACTGTCTTCATTAATACAGGTTTGACCTACAAAGTCTTCACG,"Intron (Wwox-201/Wwox, intron 8 of 8)",8,114439655,115352708,913054,1,Wwox-201,595840,Wwox-201;Wwox-209,Wwox;Wwox,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,32,32,80707,ENSMUSG00000004637,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3030,cg15033935,-0.000024,0.0000101,-2.380706911,0.01788337,loss,ns,0.0000238,0.0000171,1.394959148,0.164026802,pos,ns,0.0126985,0.005007942,2.535672511,0.011714158,pos,ns,1.93128892,-0.000532134,0.000172223,-3.089799296,0.002184472,neg,ns,0.82019753,Lrmda,Lrmda_Intron,14,22442814,22442863,22442862,22442863,50,+,TGTAATTTGATATTCATTAGCTTAGCCAGACACATGCTGATATTAGCTCG,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,423102,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206;Lrmda-202,Lrmda;Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17516,cg06083851,-0.0000444,0.00000639,-6.94766903,2.19E-11,loss,yes,0.0000151,0.0000109,1.394825941,0.164066941,pos,ns,0.003821205,0.003179108,1.201974033,0.230290965,pos,ns,0.6377231,-0.000390623,0.000109329,-3.57290653,0.000409196,neg,ns,0.578061985,Gm2497,Gm2497_Intergenic_downstream,9,90693137,90693186,90693185,90693186,50,+,CATCTGCCACGGTTAATCTGCAGGCAAACCCACACCCATGTCTATGCCCG,Distal Intergenic,9,90732924,90733524,601,2,Gm2497-201,40338,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,9,100039925,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12635,cg11577476,-0.0000314,0.00000754,-4.167495234,0.00004,loss,ns,0.0000179,0.0000128,1.3946463,0.164121085,pos,ns,0.003622225,0.003753429,0.965044225,0.33527488,pos,ns,0.474598984,-0.000368215,0.00012908,-2.852606731,0.004627686,neg,ns,0.826741899,Galnt3,Galnt3_Exon,2,66093670,66093719,66093670,66093671,50,-,CGAAAAACATGTCCAACAACAGAGCAAGGCATAATCTCCAACTGCCCACC,"Exon (Galnt3-201/Galnt3, exon 7 of 11)",2,66082766,66124994,42229,2,Galnt3-201,31275,Galnt3-201;Galnt3-204;Galnt3-202;Galnt3-203,Galnt3;Galnt3;Galnt3;Galnt3,0;0;0;8764,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,14425,ENSMUSG00000026994,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1391,cg10253106,-0.00000437,0.00000688,-0.63577081,0.525394876,loss,ns,0.0000163,0.0000117,1.394626491,0.164127056,pos,ns,0.008852848,0.003424527,2.585130051,0.010190746,pos,ns,1.991794004,-0.00039361,0.000117769,-3.342216226,0.000932895,neg,ns,0.852931187,Thsd7a,Thsd7a_Intron,6,12628645,12628694,12628693,12628694,50,+,ATAGAAAATGAACCTTTCTATTAATAATTTGACAATGACAATCCATCACG,"Intron (Gm44129-201/Gm44129-201, intron 2 of 3)",6,12311610,12749253,437644,2,Thsd7a-206,120559,Thsd7a-206;Thsd7a-202,Thsd7a;Thsd7a,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,330267,ENSMUSG00000032625,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17058,cg21732208,0.0000121,0.0000106,1.142554551,0.254105247,gain,ns,0.0000251,0.000018,1.394624257,0.164127729,pos,ns,0.005921893,0.005273387,1.122977184,0.26231613,pos,ns,0.581175003,0.00000581,0.000181351,0.032028795,0.974469699,pos,ns,0.804680947,Il1rapl1,Il1rapl1_Promoter,X,88118156,88118205,88118204,88118205,50,-,GAGCCAACTGTGGGCCTCGCTGTTTGTTGCCATGGGATCCTCTTTGTGCG,Promoter (2-3kb),20,86740870,88115645,1374776,2,Il1rapl1-203,-2560,Il1rapl1-203;Il1rapl1-202,Il1rapl1;Il1rapl1,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,6,18,331461,ENSMUSG00000052372,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7332,cg03686643,0.0000708,0.00000773,9.160432389,7.26E-18,gain,yes,-0.0000183,0.0000131,-1.394513861,0.16416101,neg,ns,0.011622357,0.003844934,3.022771142,0.002713719,pos,ns,2.566435066,-0.000276897,0.000132227,-2.09410002,0.037062925,neg,ns,0.066560644,Ptchd4,Ptchd4_Exon,17,42316854,42316903,42316854,42316855,50,+,CGCCTGGTCGCTCCCAGCCACAGCCTGGCCAAGATCGAGCGCAGCCTGGC,Promoter (<=1kb),17,42315947,42505077,189131,1,Ptchd4-201,907,Ptchd4-201;Ptchd4-203;Ptchd4-202,Ptchd4;Ptchd4;Ptchd4,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,9,627626,ENSMUSG00000042256,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
27347,cg15505103,-0.0000038,0.00000586,-0.649208392,0.51668438,loss,ns,0.0000139,0.00000995,1.39438793,0.16419898,pos,ns,-0.004909733,0.002915488,-1.684017645,0.093184828,neg,ns,1.030654792,0.000227532,0.000100263,2.269345082,0.02393415,pos,ns,0.879973173,Tbx19,Tbx19_Promoter,1,165160902,165160951,165160950,165160951,50,+,CATCCAAATTATCAGGCTTTTATCTTGTTGTACCTGAAGAGGTCTAATCG,Promoter (<=1kb),1,165137855,165160773,22919,2,Tbx19-201,-129,Tbx19-201,Tbx19,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,2,83993,ENSMUSG00000026572,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17979,cg24896496,0.0000332,0.00000966,3.437089548,0.000668293,gain,ns,-0.0000229,0.0000164,-1.394280265,0.164231448,neg,ns,-0.002263039,0.004805921,-0.470885472,0.638053692,neg,ns,0.195142774,0.0000292,0.000165275,0.176490075,0.860024189,pos,ns,0.128332786,Car10,Car10_fiveUTR,11,93100225,93100274,93100273,93100274,50,+,GATGGAAATAGTCTGGGAGGTGCTTTTTCTTCTTCAAGCCAATTTCATCG,5' UTR,11,93098404,93368999,270596,1,Car10-204,1821,Car10-207;Car10-204;Car10-205;Car10-201;Car10-203;Car10-202;Car10-206,Car10;Car10;Car10;Car10;Car10;Car10;Car10,2197;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,7,72605,ENSMUSG00000056158,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
8891,cg06053991,-0.00000252,0.00000166,-1.517297142,0.130210765,loss,ns,-0.00000394,0.00000282,-1.394188463,0.164259136,neg,ns,0.000667004,0.000827238,0.806302174,0.420686744,pos,ns,0.376041173,-0.0000416,0.0000284,-1.463946731,0.144221776,neg,ns,0.953917788,Gbf1,Gbf1_threeUTR,19,46268439,46268488,46268487,46268488,50,+,GCCTATGCTGTCATCATGCTTAATACTGACCAGCACAACCACAATGTTCG,3' UTR,19,46152509,46286510,134002,1,Gbf1-201,115930,Gbf1-201;Gbf1-214;Gbf1-213;Gbf1-215;Gbf1-212;Gbf1-208,Gbf1;Gbf1;Gbf1;Gbf1;Gbf1;Gbf1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,18,107338,ENSMUSG00000025224,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
155,cg01464821,0.00000408,0.00000595,0.685448615,0.493573119,gain,ns,-0.0000141,0.0000101,-1.394132592,0.164275988,neg,ns,-0.003679595,0.002959752,-1.243210733,0.214729601,neg,ns,0.668108084,0.0000206,0.000101786,0.202054774,0.840006435,pos,ns,0.818580521,Gria4,Gria4_Exon,9,4424367,4424416,4424415,4424416,50,-,AAGCCACCAGCATTGCCAAGCCCAAGCCGCCAACCAGAATGTAGAAGACG,"Exon (Gria4-202/Gria4, exon 16 of 17)",9,4417896,4796142,378247,2,Gria4-202,371726,Gria4-202;Gria4-204;Gria4-201,Gria4;Gria4;Gria4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,16,18,14802,ENSMUSG00000025892,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21689,cg19812206,-0.00000818,0.0000026,-3.147867728,0.001804659,loss,ns,-0.00000615,0.00000441,-1.393990275,0.164318922,neg,ns,-0.001964707,0.00129343,-1.518989181,0.12978441,neg,ns,0.886777473,0.0000563,0.0000445,1.265886364,0.206504272,pos,ns,0.948678699,Zfhx3,Zfhx3_Intron,8,108846524,108846573,108846572,108846573,50,+,CTCTTAAAGGAACGAACAGCTGTAATGGGAAAGTTGGACTCTGTCATCCG,"Intron (Zfhx3-204/Zfhx3, intron 9 of 15)",8,107942644,108961630,1018987,1,Zfhx3-204,903880,Zfhx3-204;Zfhx3-201,Zfhx3;Zfhx3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,114,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3639,cg18510419,-0.0000111,0.00000656,-1.696621371,0.090772064,loss,ns,0.0000155,0.0000111,1.393915068,0.164341614,pos,ns,0.002228489,0.003266406,0.682244948,0.495593524,pos,ns,0.304874378,-0.000179921,0.000112331,-1.601700737,0.110240273,neg,ns,0.860086109,Gm12067,Gm12067_Intergenic_upstream,11,24928003,24928052,24928003,24928004,50,-,CGCTTATTCAAAATGTGGCATTTATGTATTCAGTCTTGATGAATGTTGCA,Distal Intergenic,11,24552438,24553962,1525,2,Gm12067-201,-374090,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,26,58,100417843,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8022,cg12808364,0.0000251,0.00000882,2.84945131,0.004672635,gain,ns,0.0000209,0.000015,1.393821944,0.164369715,pos,ns,0.002182252,0.004389597,0.497141839,0.61944143,pos,ns,0.207999751,0.000148617,0.000150958,0.984492781,0.325641021,pos,ns,0.306252117,Pax2,Pax2_Intergenic_upstream,19,44695791,44695840,44695791,44695792,50,+,CGGAGCAGCGTGGTGATAACCAGAGGCGTGAAATTACAAAAGTAAAATTT,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-60205,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22153,cg24303078,-0.00000232,0.00000136,-1.703128386,0.089546315,loss,ns,0.00000323,0.00000232,1.393666463,0.164416641,pos,ns,0.000261265,0.000678549,0.385035486,0.700475162,pos,ns,0.154607259,-0.0000565,0.0000233,-2.419802823,0.016103862,neg,ns,0.976613987,Agbl4,Agbl4_Exon,4,111448565,111448614,111448565,111448566,50,+,CGGAGCACTTTCAGTGAGGAAGCAAATACGTCGTCCTATTACCCCGCTCC,"Exon (Bend5-201/Bend5, exon 4 of 6)",4,110397698,111567010,1169313,1,Agbl4-205,1050867,Agbl4-205;Agbl4-206;Agbl4-201;Agbl4-202;Agbl4-209;Bend5-201;Bend5-203;Bend5-206;Bend5-202,Agbl4;Agbl4;Agbl4;Agbl4;Agbl4;Bend5;Bend5;Bend5;Bend5,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,16,78933,ENSMUSG00000061298,mapped to different genes,4,111448510,111448618,109,*,109,9,0.52293578,1.208128079,0.082568807,0.0000019,CpGisland,TRUE,NA,NRS
19329,cg18480099,-0.0000232,0.00000851,-2.726362767,0.006768017,loss,ns,0.0000201,0.0000144,1.393580362,0.164442632,pos,ns,0.002280721,0.004233203,0.538769506,0.590432582,pos,ns,0.228829685,-0.000109603,0.00014558,-0.75287674,0.452095329,neg,ns,0.825828474,Foxp1,Foxp1_Intron,6,99017330,99017379,99017378,99017379,50,-,AGCTACAGTGATGAACTTGATAGCATTTCATATTTGCAACTGTTAACACG,"Intron (Foxp1-206/Foxp1, intron 4 of 17)",6,98925338,99266515,341178,2,Foxp1-206,249136,Foxp1-206;Foxp1-204;Foxp1-220;Foxp1-230;Foxp1-225;Foxp1-201;Foxp1-205;Foxp1-207;Foxp1-208;Foxp1-226;Foxp1-228;Foxp1-221;Foxp1-222;Foxp1-210;Foxp1-214;Foxp1-209;Foxp1-203;Foxp1-218;Foxp1-231;Foxp1-215,Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,87,108655,ENSMUSG00000030067,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27352,cg15439059,-0.0000269,0.00000888,-3.022717679,0.002714185,loss,ns,0.000021,0.0000151,1.393527127,0.164458703,pos,ns,0.002820212,0.00442143,0.637850541,0.524041834,pos,ns,0.280634042,-0.000124029,0.000152053,-0.815695481,0.415300611,neg,ns,0.244160135,Cdh22,Cdh22_Intron,2,165195914,165195963,165195962,165195963,50,+,TCCGCTTTCATCTTGTCAACCTCGCAGTAAATTACAGGCCTGGGGAGGCG,"Intron (Cdh22-201/Cdh22, intron 1 of 11)",2,165111507,165234853,123347,2,Cdh22-201,38890,Cdh22-201,Cdh22,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,23,104010,ENSMUSG00000053166,conserved gene and region,2,165195727,165195963,237,*,237,17,0.64978903,0.691199177,0.071729958,7.37E-11,CpGisland,TRUE,U13,Hc-P
9645,cg15632198,0.0000615,0.00000984,6.252485337,1.34E-09,gain,yes,-0.0000233,0.0000167,-1.393511296,0.164463483,neg,ns,0.003205259,0.004898105,0.654387694,0.513347247,pos,ns,0.289588763,-0.000235071,0.000168445,-1.395530746,0.163854647,neg,ns,0.152910557,Dbx1,Dbx1_Intergenic_upstream,7,49678300,49678349,49678300,49678301,50,+,CGCATTACACTCTCCAAATGGTGCGGTTTTGCATTTGAATGTCTGAATTA,Distal Intergenic,7,49631499,49636849,5351,2,Dbx1-201,-41451,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,18,13172,ENSMUSG00000030507,conserved gene and region,7,49678151,49678426,276,*,276,14,0.452898551,1.007824726,0.050724638,0.000000385,CpGisland,TRUE,U13,Hc-P
757,cg05088747,0.0000763,0.00000516,14.77595511,9.05E-38,gain,yes,-0.0000122,0.00000877,-1.393437735,0.164485693,neg,ns,-0.005127767,0.002570049,-1.995202155,0.046895864,neg,ns,1.328865458,0.000374326,0.0000884,4.235231712,0.0000301,pos,ns,0.895028523,Efnb2,Efnb2_Intron,8,8656011,8656060,8656059,8656060,50,+,GATTCGGAACTACAAAATGGATTACTAAAGAAATCTTCAGAGTTCACACG,"Intron (Efnb2-201/Efnb2, intron 1 of 4)",8,8617434,8661242,43809,2,Efnb2-201,5182,Efnb2-201;Efnb2-203,Efnb2;Efnb2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,3,13642,ENSMUSG00000001300,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17192,cg26188199,0.000011,0.0000112,0.983153906,0.326298378,gain,ns,-0.0000264,0.000019,-1.393387778,0.164500777,neg,ns,-0.017094025,0.005553691,-3.077957271,0.002270449,neg,ns,2.643888192,0.000336908,0.000190991,1.763999509,0.078716971,pos,ns,0.732576213,Gm6625,Gm6625_Intergenic_downstream,8,89143847,89143896,89143895,89143896,50,+,TCTCCATTTCTCCCAGTTAACAGCCCTGTCTCTGAAATGAATCAATGTCG,Downstream (2-3kb),8,89146787,89147058,272,2,Gm6625-201,3162,Gm6625-201,Gm6625,3162,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,5,7,625801,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20779,cg11146440,0.000106231,0.0000215,4.932608901,0.00000133,gain,yes,-0.000051,0.0000366,-1.393365686,0.164507448,neg,ns,0.035545897,0.010718944,3.316175264,0.001021,pos,ns,2.99097433,-0.000820648,0.000368624,-2.226249708,0.026715987,neg,ns,0.49286829,Cbfb,Cbfb_Exon,8,105178588,105178637,105178636,105178637,50,+,AAAAGGCTTTTGTGGCCACAGGAACCAATCTGTCTCTCCAGTTTTTTCCG,"Exon (Cbfb-201/Cbfb, exon 3 of 6)",8,105170674,105217989,47316,1,Cbfb-201,7914,Cbfb-201;Cbfb-202;Cbfb-204;Cbfb-203;Cbfb-205;Cbfb-207;Cbfb-206,Cbfb;Cbfb;Cbfb;Cbfb;Cbfb;Cbfb;Cbfb,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,12400,ENSMUSG00000031885,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16937,cg26923156,0.00000264,0.00000207,1.275142785,0.203213522,gain,ns,-0.00000491,0.00000352,-1.393325562,0.164519565,neg,ns,-0.000408593,0.001031704,-0.396037198,0.692350028,neg,ns,0.159674286,0.0000384,0.0000355,1.083225279,0.279550243,pos,ns,0.04824731,Ascl1,Ascl1_Intergenic_downstream,10,87489710,87489759,87489758,87489759,50,-,AAATGGTATAGATGTACCAACACAGACTAGATTTTTAACTCTGGAAGACG,Distal Intergenic,10,87490819,87493660,2842,2,Ascl1-201,3950,Ascl1-201,Ascl1,3901,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,11,11,17172,ENSMUSG00000020052,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
6440,cg22106784,0.00000418,0.0000042,0.996298034,0.319882389,gain,ns,-0.00000993,0.00000713,-1.393256857,0.164540314,neg,ns,-0.003317627,0.002088118,-1.588811822,0.113122219,neg,ns,0.946452085,0.00011293,0.0000718,1.572614374,0.116828168,pos,ns,0.083764719,Tenm2,Tenm2_Promoter,11,37236207,37236256,37236207,37236208,50,-,CGACCTGAGCCTGCGAGCCACCCAGGACCAATGTGCAACCTGCTCTGGAA,Promoter (<=1kb),11,36944205,37235964,291760,2,Tenm2-207,-292,Tenm2-202;Tenm2-207,Tenm2;Tenm2,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,6,84,23964,ENSMUSG00000049336,mapped to different genes,11,37236045,37236221,177,*,177,17,0.672316384,0.854829546,0.096045198,5.62E-13,CpGisland,TRUE,U3,Pr-B
22889,cg07795407,0.0000138,0.00000322,4.28159059,0.0000248,gain,ns,0.00000762,0.00000547,1.393178664,0.164563931,pos,ns,-0.000897416,0.001601865,-0.560231991,0.575725832,neg,ns,0.239784284,0.000109984,0.0000551,1.996511583,0.046752508,pos,ns,0.047542141,Meis2,Meis2_fiveUTR,2,116065231,116065280,116065279,116065280,50,+,ACTGTCGTGTTTCATGGCTTTTTGCCACTCCAGCTGTCAATCAAAGCCCG,Promoter (<=1kb),2,115863064,116065839,202776,2,Meis2-205,559,Meis2-201;Meis2-203;Meis2-205;Meis2-206;Meis2-204;Meis2-202;Meis2-213;Meis2-210;Meis2-209,Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2,0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,11,97,17536,ENSMUSG00000027210,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21449,cg00786351,0.0000813,0.0000131,6.203097767,1.77E-09,gain,yes,-0.000031,0.0000223,-1.393116706,0.164582646,neg,ns,0.028315789,0.006522115,4.341504314,0.0000192,pos,ns,4.717033276,-0.000864473,0.000224295,-3.854181176,0.000141168,neg,ns,0.323461238,Zswim6,Zswim6_Exon,13,107787896,107787945,107787944,107787945,50,-,AGCTGCAGGTCACTGAGGTAATCTTGCAACGATCAAAGCTGATGGCCACG,"Exon (Zswim6-204/Zswim6, exon 2 of 13)",13,107724617,107890064,165448,2,Zswim6-204,102119,Zswim6-204;Zswim6-201,Zswim6;Zswim6,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,14,26,67263,ENSMUSG00000032846,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10977,cg13691476,-0.0000104,0.00000851,-1.224577617,0.221664153,loss,ns,0.0000201,0.0000145,1.393053565,0.16460172,pos,ns,-0.000237626,0.004234332,-0.05611891,0.955283231,neg,ns,0.019867846,0.000130463,0.000145618,0.895923911,0.370988563,pos,ns,0.637286558,Gm47072,Gm47072_Intron,13,55956096,55956145,55956144,55956145,50,-,CACAGGAAGCGTCAGCACAATTTTCTAATCAAGTTGAAGTCTGTGGCCCG,"Intron (Gm47071-202/Gm47071-202, intron 3 of 5)",13,56027384,56030234,2851,2,Gm47072-201,74138,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18849,cg23464958,-0.00000265,0.00000265,-0.998792688,0.318674108,loss,ns,-0.00000628,0.00000451,-1.392856462,0.164661273,neg,ns,0.000230627,0.001320034,0.174712817,0.861419345,pos,ns,0.064785379,0.0000172,0.0000454,0.377847676,0.705802334,pos,ns,0.955872841,Ppip5k2,Ppip5k2_Exon,1,97716537,97716586,97716537,97716538,50,+,CGTACCATTGGTTGGGTGTCGAGCAAATGAGATAGAAAACCTTTTAACAG,Promoter (<=1kb),1,97711434,97716546,5113,2,Ppip5k2-207,0,Ppip5k2-203;Ppip5k2-201;Ppip5k2-202;Ppip5k2-205;Ppip5k2-207;Ppip5k2-206,Ppip5k2;Ppip5k2;Ppip5k2;Ppip5k2;Ppip5k2;Ppip5k2,-1388;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,10,227399,ENSMUSG00000040648,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20868,cg26544363,0.00000184,0.000000698,2.639476934,0.00872327,gain,ns,-0.00000165,0.00000119,-1.39275965,0.16469053,neg,ns,-0.000189104,0.000347198,-0.544656613,0.58638129,neg,ns,0.231819895,0.0000204,0.0000119,1.711874321,0.087919948,pos,ns,0.017241136,Pax6,Pax6_fiveUTR,2,105675380,105675429,105675428,105675429,50,-,CGCGAGGCCCCGGCGCTGCTTTGCATAAAGCAATATTTTGTGTGAGAGCG,5' UTR,2,105668900,105697364,28465,1,Pax6-206,6480,Pax6-206;Pax6-207;Pax6-210;Pax6-214;Pax6-208;Pax6-217;Pax6-226;Pax6-220;Pax6-202;Pax6-205;Pax6-225;Pax6-204;Pax6-201;Pax6-203;Pax6-224;Pax6-219,Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,15,78,18508,ENSMUSG00000027168,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
7902,cg01901707,-0.00000415,0.0000022,-1.891124002,0.059539973,loss,ns,0.00000519,0.00000373,1.392361656,0.164810847,pos,ns,0.002901636,0.001092673,2.655537923,0.008327506,pos,ns,2.079485071,-0.000104811,0.0000376,-2.789235828,0.005610106,neg,ns,0.954668687,Ebf1,Ebf1_Intron,11,44626248,44626297,44626296,44626297,50,+,AACTGCTCCCTCCTGGATAATATACAGCCATTTGTTCGGGGATATTTACG,"Intron (Ebf1-203/Ebf1, intron 4 of 15)",11,44617317,45004995,387679,1,Ebf1-203,8931,Ebf1-203;Ebf1-202;Ebf1-201;Ebf1-207;Ebf1-204;Ebf1-205,Ebf1;Ebf1;Ebf1;Ebf1;Ebf1;Ebf1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,80,13591,ENSMUSG00000057098,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6548,cg25414069,-0.00000533,0.00000337,-1.582411529,0.114575317,loss,ns,0.00000797,0.00000572,1.392329189,0.164820665,pos,ns,-0.003239909,0.00167685,-1.932139337,0.054253294,neg,ns,1.265573891,0.0000956,0.0000577,1.658366643,0.098254929,pos,ns,0.933959714,Panx3,Panx3_Exon,9,37661366,37661415,37661366,37661367,50,-,CGACATAGCCGTGTGAGGTTGTATATTATCACTGGAACCAATATGGTGTA,"Exon (Panx3-201/Panx3, exon 4 of 4)",9,37659902,37669235,9334,2,Panx3-201,7820,Panx3-201;Panx3-202;Tbrg1-201;Tbrg1-204;Tbrg1-203;Tbrg1-202,Panx3;Panx3;Tbrg1;Tbrg1;Tbrg1;Tbrg1,0;7758;0;0;0;-4198,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,208098,ENSMUSG00000011118,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3149,cg02202770,0.00000327,0.00000752,0.43544533,0.663542238,gain,ns,0.0000178,0.0000128,1.392216897,0.164854625,pos,ns,0.004127127,0.003741022,1.103208581,0.270792257,pos,ns,0.567363758,0.0000119,0.000128653,0.092516263,0.92634763,pos,ns,0.831987709,Ptprz1,Ptprz1_Exon,6,23000263,23000312,23000311,23000312,50,+,TTGACAATCAGATCCTCAACACTACCCCTGCTGCTTCAAGTAGTGATTCG,"Exon (Ptprz1-201/Ptprz1, exon 12 of 30)",6,22875502,23052916,177415,1,Ptprz1-201,124761,Ptprz1-201;Ptprz1-206;Ptprz1-204;Ptprz1-203,Ptprz1;Ptprz1;Ptprz1;Ptprz1,0;0;0;13954,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,4,19283,ENSMUSG00000068748,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15994,cg21864422,-0.0000075,0.00000687,-1.092472635,0.27547368,loss,ns,0.0000162,0.0000117,1.392174465,0.164867459,pos,ns,0.006220376,0.003417372,1.82022218,0.069689354,pos,ns,1.156833561,-0.000213845,0.000117523,-1.819597802,0.069784708,neg,ns,0.091787106,Dysf,Dysf_Intron,6,84105667,84105716,84105715,84105716,50,-,AATATTATATTACTACAGGGTGTGCAGTACGTGACCTGAGACAGGCCCCG,"Intron (Dysf-204/Dysf, intron 22 of 54)",6,84008590,84211060,202471,1,Dysf-204,97077,Dysf-204;Dysf-205;Dysf-213;Dysf-215;Dysf-210;Dysf-211;Dysf-212;Dysf-214;Dysf-216;Dysf-202;Dysf-203;Dysf-201;Dysf-206;Dysf-209,Dysf;Dysf;Dysf;Dysf;Dysf;Dysf;Dysf;Dysf;Dysf;Dysf;Dysf;Dysf;Dysf;Dysf,0;0;0;0;0;0;0;0;0;0;0;0;0;-835,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,15,26903,ENSMUSG00000033788,conserved gene and region,6,84105575,84105753,179,*,179,19,0.69273743,0.896179183,0.106145251,2.56E-15,CpGisland,TRUE,NA,NRS
2642,cg13657699,0.00000526,0.00000894,0.588360171,0.556718971,gain,ns,0.0000211,0.0000152,1.392050476,0.164904965,pos,ns,0.000757265,0.004451121,0.170129141,0.865019551,pos,ns,0.062974077,-0.000427144,0.000153074,-2.790447576,0.00558967,neg,ns,0.830237805,Tmc1,Tmc1_Exon,19,20826516,20826565,20826564,20826565,50,-,TCCCACCACCCAAGGGTGTCAGGATCTTGCTGTGCAAATTCCTGGGATCG,"Exon (Tmc1-201/Tmc1, exon 12 of 21)",19,20783458,20954202,170745,2,Tmc1-201,127637,Tmc1-201;Tmc1-202,Tmc1;Tmc1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,13409,ENSMUSG00000024749,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27154,cg17690219,0.000011,0.00000932,1.179080512,0.239270267,gain,ns,-0.0000221,0.0000158,-1.391995388,0.164921632,neg,ns,-0.004014304,0.004640965,-0.864971707,0.387723165,neg,ns,0.411478251,-0.0000493,0.000159602,-0.309148211,0.757416461,neg,ns,0.856343005,Tnr,Tnr_Intron,1,159742939,159742988,159742939,159742940,50,-,CGAAGGTCAATGTGCAGATACAAATTGATTAAGCTAAGTACTTACTGAAA,"Intron (Tnr-202/Tnr, intron 2 of 22)",1,159523769,159931729,407961,1,Tnr-202,219170,Tnr-202;Tnr-201,Tnr;Tnr,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,13,21960,ENSMUSG00000015829,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11731,cg01079751,0.000106509,0.0000109,9.738462994,9.98E-20,gain,yes,0.0000259,0.0000186,1.391811864,0.164977163,pos,ns,0.013564686,0.005443411,2.491945836,0.013226768,pos,ns,1.878546265,-0.000013,0.000187198,-0.069356785,0.944750344,neg,ns,0.359453448,Fam204a,Fam204a_Intergenic_upstream,19,60287004,60287053,60287004,60287005,50,+,CGCAGTGGCGGCTGTTTAACATTCATGGGAAAATCATCATCAAACAGCGT,Distal Intergenic,19,60199435,60226701,27267,2,Fam204a-205,-60303,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,14,76539,ENSMUSG00000057858,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14520,cg24509515,-0.00000688,0.00000534,-1.287566063,0.198857458,loss,ns,0.0000126,0.00000908,1.391798545,0.164981194,pos,ns,0.001609219,0.002660258,0.60491107,0.54568061,pos,ns,0.263061478,-0.0000358,0.0000915,-0.391329399,0.695822608,neg,ns,0.92797871,Zbtb7c,Zbtb7c_Exon,18,76145724,76145773,76145724,76145725,50,+,CGGCCCTACCTGTGCATCCACTGCAACGCCAAGTTCGTGCACAACTACGA,"Exon (Zbtb7c-201/Zbtb7c, exon 5 of 5)",18,75820178,76148564,328387,1,Zbtb7c-201,325546,Zbtb7c-201;Zbtb7c-203;Zbtb7c-202,Zbtb7c;Zbtb7c;Zbtb7c,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,4,207259,ENSMUSG00000044646,conserved gene and region,18,76145706,76146063,358,*,358,37,0.689944134,0.884245661,0.103351955,5.50E-29,CpGisland,TRUE,U11,Tr-P
27056,cg20380566,0.00000261,0.00000269,0.969134891,0.333233397,gain,ns,-0.00000636,0.00000457,-1.391715461,0.165006339,neg,ns,-0.003349625,0.001339712,-2.500257805,0.012926538,neg,ns,1.888517781,0.000096,0.0000461,2.083505486,0.038024126,pos,ns,0.918133017,Rpn2,Rpn2_Exon,2,157323226,157323275,157323226,157323227,50,+,CGCTGCAGAGCAGAGCAGTAGATTGGCAAAATATAGGACACTACGGTAAA,"Exon (Rpn2-201/Rpn2, exon 16 of 17)",2,157279059,157326319,47261,1,Rpn2-202,44167,Rpn2-202;Rpn2-201;Rpn2-206;Rpn2-205;Rpn2-207;Rpn2-209,Rpn2;Rpn2;Rpn2;Rpn2;Rpn2;Rpn2,0;0;0;0;7049;3443,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,20014,ENSMUSG00000027642,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15283,cg16671155,0.00000245,0.00000253,0.967808312,0.333894553,gain,ns,-0.00000597,0.00000429,-1.391603635,0.165040187,neg,ns,-0.000490623,0.001257443,-0.390174778,0.696675266,neg,ns,0.156969608,-0.0000253,0.0000432,-0.584976868,0.558988801,neg,ns,0.949356582,Actn1,Actn1_Exon,12,80170726,80170775,80170774,80170775,50,+,CAGGCTTTGAACTCCTCGGGACCCAGTGTGCCGGAGTGATCCTGGGGCCG,"Exon (Actn1-201/Actn1, exon 19 of 21)",12,80167547,80260371,92825,2,Actn1-201,89596,Actn1-201;Actn1-206;Actn1-202;Actn1-205,Actn1;Actn1;Actn1;Actn1,0;0;0;-575,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,10,109711,ENSMUSG00000015143,conserved gene but different region,12,80170742,80170941,200,*,200,12,0.7,0.653061225,0.06,0.000000585,CpGisland,TRUE,U10,Tr-S
16720,cg00908709,0.00000222,0.00000501,0.44375406,0.657529975,gain,ns,-0.0000118,0.00000851,-1.391548456,0.165056891,neg,ns,-0.006790805,0.002491953,-2.725093557,0.006793468,neg,ns,2.167908485,0.0000655,0.0000857,0.764275484,0.445284434,pos,ns,0.808506395,Adamtsl1,Adamtsl1_Exon,4,86248029,86248078,86248029,86248030,50,+,CGGGCAGTTTCCTGTGTGGAGGAGGACATCCAGGGGCATGTCACTTCAGT,"Exon (Adamtsl1-203/Adamtsl1, exon 10 of 28)",4,86053915,86428382,374468,1,Adamtsl1-203,194114,Adamtsl1-203;Adamtsl1-201;Adamtsl1-209;Adamtsl1-207,Adamtsl1;Adamtsl1;Adamtsl1;Adamtsl1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,10,77739,ENSMUSG00000066113,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14637,cg05405476,-0.0000156,0.00000427,-3.65029971,0.000307308,loss,ns,0.0000101,0.00000726,1.391504603,0.165070167,pos,ns,0.001948529,0.002126317,0.916387311,0.360176113,pos,ns,0.443485093,-0.0000794,0.0000731,-1.085878151,0.27837657,neg,ns,0.917612105,Slf1,Slf1_Exon,13,77046594,77046643,77046594,77046595,50,+,CGTCCACTTGAGTGAGCAGATCTACCTCTGGACAACGTTGCAAAATTTCC,"Exon (Slf1-201/Slf1, exon 20 of 21)",13,77043088,77135473,92386,2,Slf1-201,88830,Slf1-201;Slf1-204,Slf1;Slf1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,105377,ENSMUSG00000021597,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24920,cg14918572,0.000000924,0.00000272,0.339781269,0.734251349,gain,ns,0.00000643,0.00000462,1.391465252,0.165082081,pos,ns,0.00023233,0.001353422,0.171660895,0.863816132,pos,ns,0.06357869,0.0000271,0.0000465,0.581796125,0.561126845,pos,ns,0.863990434,Tmem39b,Tmem39b_threeUTR,4,129676636,129676685,129676636,129676637,50,-,CGGTCCCGGAGCAGCTTGAAGAAGGCATAGTAGTTGCTGAAGAGGATGAG,3' UTR,4,129676355,129696796,20442,2,Tmem39b-202,20111,Kpna6-202;Kpna6-203;Kpna6-206;Tmem39b-202;Tmem39b-201;Tmem39b-205,Kpna6;Kpna6;Kpna6;Tmem39b;Tmem39b;Tmem39b,0;-4108;-3869;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,3,230770,ENSMUSG00000053730,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16867,cg26678260,0.00000177,0.00000493,0.359610038,0.719383621,gain,ns,0.0000116,0.00000837,1.391261142,0.165143888,pos,ns,0.006701482,0.002452048,2.733014412,0.00663604,pos,ns,2.178090976,-0.000268644,0.0000843,-3.185785083,0.001590618,neg,ns,0.904030383,Ythdc1,Ythdc1_threeUTR,5,86829396,86829445,86829444,86829445,50,-,AGTCAGTAGTTGGACTACTATATGAACTGTTACTATCATGTTTTATACCG,3' UTR,5,86804221,86836654,32434,1,Ythdc1-202,25175,Ythdc1-202;Ythdc1-203;Ythdc1-208;Ythdc1-201;Ythdc1-207;Ythdc1-206;Ythdc1-205;Ythdc1-204,Ythdc1;Ythdc1;Ythdc1;Ythdc1;Ythdc1;Ythdc1;Ythdc1;Ythdc1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,12,17,231386,ENSMUSG00000035851,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11590,cg21794012,-0.00000862,0.00000295,-2.92507935,0.00369777,loss,ns,-0.00000697,0.00000501,-1.391223264,0.165155359,neg,ns,-0.003566952,0.001467422,-2.430760567,0.015634024,neg,ns,1.805929221,0.000126611,0.0000505,2.508901943,0.01262075,pos,ns,0.938327989,Cdk15,Cdk15_Intron,1,59327235,59327284,59327235,59327236,50,+,CGGACAATGACCAATTACAATAACCAGTATTATTTGATCTGAGAGTAATT,"Intron (Cdk15-202/Cdk15, intron 11 of 13)",1,59256906,59352993,96088,1,Cdk15-202,70329,Cdk15-202;Cdk15-201;Cdk15-204,Cdk15;Cdk15;Cdk15,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,5,271697,ENSMUSG00000026023,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21163,cg07667286,0.0000704,0.0000253,2.786017858,0.005664704,gain,ns,0.0000597,0.0000429,1.391079394,0.165198938,pos,ns,0.046033111,0.012580643,3.659042775,0.000297433,pos,ns,3.526610211,-0.002253746,0.000432647,-5.209199486,0.000000346,neg,yes,0.456503652,Mpped2,Mpped2_Exon,2,106575624,106575673,106575672,106575673,50,-,GTTGTAATAATTCCTATTACAGCCAAAACGGAAAAGTCAGTAACTCACCG,"Exon (Gm14014-201/Gm14014-201, exon 2 of 2)",2,106693269,106868356,175088,1,Mpped2-202,-117645,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,16,33,77015,ENSMUSG00000016386,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9957,cg15715091,-5.18E-08,0.000000967,-0.053517763,0.957353849,loss,ns,0.00000229,0.00000164,1.391025252,0.165215339,pos,ns,0.001522893,0.000481348,3.163809117,0.001711621,pos,ns,2.766592509,-0.0000495,0.0000166,-2.987760793,0.003034756,neg,ns,0.97143305,Hectd1,Hectd1_Exon,12,51754949,51754998,51754997,51754998,50,+,TTTCTGTTTTTCCTAATACTTTTATTAGTGCCAGTTAATTTCCAGTGGCG,"Exon (Hectd1-201/Hectd1, exon 32 of 43)",12,51743722,51829536,85815,2,Hectd1-201,74538,Hectd1-201;Hectd1-202;Hectd1-204,Hectd1;Hectd1;Hectd1,0;0;10233,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,19,19,207304,ENSMUSG00000035247,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22434,cg25928215,0.0000196,0.0000145,1.357014349,0.175763886,gain,ns,0.0000342,0.0000246,1.391005361,0.165221365,pos,ns,0.021199237,0.007205982,2.941894359,0.003508004,pos,ns,2.454939901,-0.000906767,0.000247813,-3.659076413,0.000297396,neg,ns,0.301486296,Fam222a,Fam222a_Intergenic_upstream,5,114537638,114537687,114537686,114537687,50,-,CAATCGGCTGTAATTACTTTGGGGACACAGTTAACCTCTCATTAGGAACG,Distal Intergenic,5,114568016,114613220,45205,1,Fam222a-201,-30378,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,16,433940,ENSMUSG00000041930,conserved gene and region,5,114537686,114537818,133,*,133,14,0.601503759,1.200515796,0.105263158,2.58E-11,CpGisland,TRUE,U13,Hc-P
132,cg27275768,-0.000000917,0.00000204,-0.450481884,0.652677907,loss,ns,-0.00000481,0.00000346,-1.390936163,0.165242331,neg,ns,-0.000907572,0.001012908,-0.896006071,0.370944751,neg,ns,0.43069077,0.0000344,0.0000348,0.988127381,0.32386088,pos,ns,0.964448931,Kdm2a,Kdm2a_Exon,19,4324663,4324712,4324711,4324712,50,+,TGTCCCGTGGAGCTCTTTGGTGGGCCTCTGTAGCGTGACAGTGAGGTACG,"Exon (Kdm2a-201/Kdm2a, exon 17 of 21)",19,4314419,4398285,83867,2,Kdm2a-201,73573,Kdm2a-201;Kdm2a-202;Kdm2a-213;Kdm2a-211;Kdm2a-207;Kdm2a-214;Kdm2a-212;Kdm2a-210,Kdm2a;Kdm2a;Kdm2a;Kdm2a;Kdm2a;Kdm2a;Kdm2a;Kdm2a,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,21,30,225876,ENSMUSG00000054611,conserved gene and region,19,4324711,4324995,285,*,285,19,0.621052632,0.696373457,0.066666667,1.66E-11,CpGisland,TRUE,U10,Tr-S
2443,cg26671587,0.00000865,0.00000273,3.17164524,0.00166753,gain,ns,0.00000645,0.00000464,1.390816745,0.165278516,pos,ns,0.004562015,0.001358032,3.35928481,0.000879043,pos,ns,3.055989681,-0.0000966,0.0000467,-2.069318728,0.039344536,neg,ns,0.057122067,Ptf1a,Ptf1a_Exon,2,19452122,19452171,19452122,19452123,50,+,CGCTGCTGCGTTTGTGCGCAAGTGACTCTCCTGTGCCACACACAAAAGGC,"Exon (1810010K12Rik-201/1810010K12Rik-201, exon 1 of 1)",2,19445663,19447501,1839,1,Ptf1a-201,6459,Ptf1a-201,Ptf1a,6459,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,21,19213,ENSMUSG00000026735,conserved gene but different region,2,19452017,19452139,123,*,123,15,0.715447155,1.044142615,0.12195122,4.07E-13,CpGisland,TRUE,U13,Hc-P
23129,cg17378626,0.0000753,0.0000297,2.535638558,0.01171527,gain,ns,-0.0000701,0.0000504,-1.390644755,0.165330643,neg,ns,0.020604556,0.014775982,1.394462641,0.164176452,pos,ns,0.784689133,-0.000422382,0.000508145,-0.831223996,0.406486872,neg,ns,0.432936534,Rnf220,Rnf220_Intron,4,117317253,117317302,117317301,117317302,50,+,TTGCATCTGGAGATCAATTAGCATCAATTACTGACTTCATTTAATTGTCG,"Intron (Rnf220-201/Rnf220, intron 2 of 14)",4,117271463,117497052,225590,2,Rnf220-201,179750,Rnf220-201;Rnf220-202;Rnf220-207,Rnf220;Rnf220;Rnf220,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
26901,cg12103307,0.0000894,0.0000124,7.193131257,4.78E-12,gain,yes,-0.0000294,0.0000211,-1.390620827,0.165337896,neg,ns,0.024083622,0.006187156,3.892519208,0.000121496,pos,ns,3.915436956,-0.000753487,0.000212776,-3.541227188,0.000459426,neg,ns,0.221140197,Prdm16,Prdm16_Intron,4,154499947,154499996,154499947,154499948,50,-,CGCTGTGGCCAGTCAATCTGGTTTCTGGGCCCGCTGCCCTGACCCTCTTT,"Intron (Prdm16-201/Prdm16, intron 2 of 16)",4,154316125,154636866,320742,2,Prdm16-201,136870,Prdm16-201;Prdm16-202;Prdm16-203;Prdm16-204;Prdm16-205;Prdm16-206;Prdm16-210;Prdm16-207;Prdm16-209;Prdm16-212,Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,32,70673,ENSMUSG00000039410,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13521,cg25863103,0.0000316,0.00000836,3.782400475,0.000186365,gain,ns,-0.0000198,0.0000142,-1.390613528,0.165340108,neg,ns,0.017918276,0.004162712,4.304471455,0.0000225,pos,ns,4.648269117,-0.000534937,0.000143155,-3.736762236,0.000221876,neg,ns,0.267297885,Gm34783,Gm34783_Intron,7,71098430,71098479,71098478,71098479,50,+,CAACCTGAGTGCTAATTTTTGAAGCAAAACCTCTGTGATCATTTCACTCG,"Intron (Gm39033-201/Gm39033-201, intron 1 of 3)",7,70912518,70912820,303,2,Gm34783-201,-185610,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,5,102638149,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23616,cg17777878,-0.000000293,0.0000019,-0.153943356,0.877754566,loss,ns,-0.0000045,0.00000323,-1.3905824,0.165349544,neg,ns,0.0000636,0.000947567,0.067154152,0.946502274,pos,ns,0.023878338,-0.0000474,0.0000326,-1.453791228,0.147015817,neg,ns,0.031751356,Dll4,Dll4_Intron,2,119327288,119327337,119327336,119327337,50,+,GCTGCCTGGACTCAGAGCACAATTGCGTTTCCTGCGGGTTATTTTTGGCG,"Intron (Dll4-201/Dll4, intron 3 of 10)",2,119325784,119335962,10179,1,Dll4-201,1504,Dll4-201;Dll4-202,Dll4;Dll4,0;-1201,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,20,54485,ENSMUSG00000027314,conserved gene but different region,2,119327100,119327430,331,*,331,31,0.637462236,0.947985957,0.093655589,5.80E-23,CpGisland,TRUE,U3,Pr-B
14095,cg00222071,-7.35E-08,0.000000791,-0.092862562,0.926072733,loss,ns,-0.00000187,0.00000134,-1.390229329,0.1654566,neg,ns,-0.000419966,0.00039386,-1.066282725,0.287125583,neg,ns,0.54192811,0.00000597,0.0000135,0.44043364,0.659930015,pos,ns,0.020873059,Evx2,Evx2_Promoter,2,74659853,74659902,74659901,74659902,50,-,GTTTGGCCTCGGGGGTGAAATTGACAGTCTGATTAATAGAGCGCGCCGCG,Promoter (<=1kb),2,74652991,74659557,6567,2,Evx2-201,-345,Evx2-201;Evx2-202,Evx2;Evx2,0;-434,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,9,35,14029,ENSMUSG00000001815,conserved gene and region,2,74659719,74659937,219,*,219,14,0.561643836,0.817164179,0.063926941,2.21E-08,CpGisland,TRUE,U13,Hc-P
13615,cg18751668,0.000029,0.0000028,10.36545051,8.23E-22,gain,yes,-0.00000662,0.00000476,-1.390117516,0.165490514,neg,ns,0.000685855,0.001394673,0.49176713,0.623232002,pos,ns,0.205350254,-0.0000171,0.000048,-0.35590914,0.722150688,neg,ns,0.077055431,Dlx1,Dlx1_Intron,2,71530659,71530708,71530707,71530708,50,+,AGCGCTATAAACAATGTATGCAATTAAGGGTAATTAAACCTCAACTACCG,"Intron (Dlx1-201/Dlx1, intron 1 of 2)",2,71528113,71533980,5868,1,Dlx1-201,2546,Dlx1-201;Dlx1-202;Dlx1-205;Dlx1-204;Dlx1-203;Dlx1-206,Dlx1;Dlx1;Dlx1;Dlx1;Dlx1;Dlx1,0;0;0;0;0;-72,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,36,13390,ENSMUSG00000041911,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
6151,cg12590171,0.0000193,0.00000756,2.556703221,0.011043148,gain,ns,0.0000178,0.0000128,1.389964859,0.165536825,pos,ns,0.002195561,0.003760949,0.583778584,0.559793801,pos,ns,0.251971915,0.000039,0.000129339,0.301532999,0.76321026,pos,ns,0.706096204,Nrg2,Nrg2_Intron,18,36153703,36153752,36153751,36153752,50,+,ACCAAGCCAGTTGTTAAGTAGGCGTGAGAACCCATCAGCTGGAAACACCG,"Intron (Nrg2-203/Nrg2, intron 1 of 9)",18,36017652,36197380,179729,2,Nrg2-203,43628,Nrg2-203;Nrg2-201,Nrg2;Nrg2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,20,100042150,ENSMUSG00000060275,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1695,cg27066705,-0.00000728,0.00000223,-3.270273693,0.001195393,loss,ns,0.00000526,0.00000378,1.389948397,0.165541819,pos,ns,0.000788564,0.001108044,0.711671878,0.47720318,pos,ns,0.321296671,-0.0000259,0.0000381,-0.678499104,0.497961468,neg,ns,0.046700463,Tle4,Tle4_Intron,19,14596500,14596549,14596500,14596501,50,+,CGAAAGTTTGGCCTCAGCGTTTTCCAAGTCTCCCCAGTTTCGATTGTTCT,"Intron (Tle4-201/Tle4, intron 2 of 19)",19,14448150,14598051,149902,2,Tle4-201,1502,Tle4-201;Tle4-202;Tle4-203,Tle4;Tle4;Tle4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,29,21888,ENSMUSG00000024642,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
20087,cg07131718,-0.00000361,0.00000268,-1.348483168,0.178487379,loss,ns,-0.00000632,0.00000454,-1.38988212,0.165561929,neg,ns,0.001059384,0.001331386,0.795700337,0.426815085,pos,ns,0.36976024,-0.0000485,0.0000458,-1.058562764,0.290623084,neg,ns,0.898326868,Map3k12,Map3k12_Exon,15,102500106,102500155,102500106,102500107,50,+,CGCAAGGCATCAACGCTGTTGGAGTTGTCCAATTCAGTGCTGTCACAGTC,"Exon (Map3k12-201/Map3k12, exon 14 of 14)",15,102497646,102516836,19191,2,Map3k12-201,16681,Gm10337-201;Map3k12-201;Map3k12-208;Map3k12-207;Pcbp2-201;Pcbp2-212;Pcbp2-214;Pcbp2-216;Pcbp2-203;Pcbp2-217;Pcbp2-202;Pcbp2-206;Pcbp2-219;Pcbp2-230;Pcbp2-210;Pcbp2-204;Pcbp2-215;Pcbp2-225,Gm10337;Map3k12;Map3k12;Map3k12;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,26404,ENSMUSG00000023050,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18965,cg26134354,-0.00000541,0.00000325,-1.662353951,0.09745258,loss,ns,-0.00000768,0.00000553,-1.389872971,0.165564706,neg,ns,-0.0038394,0.001619832,-2.370245639,0.018387971,neg,ns,1.735466196,-0.0000559,0.0000557,-1.003870669,0.316223888,neg,ns,0.956755953,Nfia,Nfia_Exon,4,98081731,98081780,98081731,98081732,50,+,CGACACCCAGCACCTCCCCCGCAAACCGATTCGTCAGTGTTGGACCACGG,"Exon (Nfia-202/Nfia, exon 10 of 11)",4,97777608,98118871,341264,1,Nfia-202,304123,Nfia-202;Nfia-203;Nfia-205;Nfia-201;Nfia-204,Nfia;Nfia;Nfia;Nfia;Nfia,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,44,18027,ENSMUSG00000028565,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14868,cg25901870,0.00000137,0.00000239,0.575431012,0.565417275,gain,ns,-0.00000563,0.00000405,-1.389871516,0.165565147,neg,ns,0.000206037,0.001187255,0.173540758,0.862339656,pos,ns,0.064321642,0.0000258,0.0000408,0.631529583,0.528159711,pos,ns,0.895018681,Phf12,Phf12_threeUTR,11,78024959,78025008,78025007,78025008,50,+,AGATGGCAAGGTCAGCCCCGGCACGTTATCCATAGGAAGCGCTTTAACCG,3' UTR,11,77982754,78026214,43461,1,Phf12-202,42205,Phf12-202;Phf12-201;Phf12-207;Phf12-206;Phf12-208;Phf12-205;Phf12-203;Phf12-204,Phf12;Phf12;Phf12;Phf12;Phf12;Phf12;Phf12;Phf12,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,11,27,268448,ENSMUSG00000037791,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19193,cg14829516,-0.000019,0.00000728,-2.605689714,0.009611439,loss,ns,-0.0000172,0.0000124,-1.389755338,0.165600402,neg,ns,0.000177709,0.003621934,0.049064641,0.960899378,pos,ns,0.017322088,-0.000166939,0.000124558,-1.34024964,0.18114565,neg,ns,0.853471745,Nr1d1,Nr1d1_Exon,11,98768266,98768315,98768314,98768315,50,+,TTGTTCAGGGTCCGCAGGTCCGGCAGCTTGAGCAGCAGCTTGGTGAAGCG,"Exon (Thra-201/Thra, exon 10 of 10)",11,98767932,98775333,7402,2,Nr1d1-201,7018,Nr1d1-201;Nr1d1-202;Thra-201;Thra-202;Thra-203,Nr1d1;Nr1d1;Thra;Thra;Thra,0;2111;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,9,217166,ENSMUSG00000020889,mapped to different genes,11,98768145,98768493,349,*,349,27,0.633237822,0.781732205,0.077363897,8.51E-18,CpGisland,TRUE,U6,En-Sp
8208,cg05769662,0.00000122,0.00000452,0.269939758,0.787386206,gain,ns,0.0000107,0.00000767,1.389740649,0.16560486,pos,ns,0.001812243,0.002247448,0.806355995,0.420655765,pos,ns,0.376073155,-0.0000883,0.0000773,-1.141819667,0.254410178,neg,ns,0.930426067,Kmt2a,Kmt2a_Exon,9,44850030,44850079,44850030,44850031,50,+,CGAGGTTTTCGAGGACTAGTTTTAACTGTGTATAGAAATTAAACAATGAA,"Exon (Kmt2a-201/Kmt2a, exon 3 of 36)",9,44803355,44881296,77942,2,Kmt2a-201,31217,Kmt2a-201;Kmt2a-202;Kmt2a-205;Kmt2a-203;Kmt2a-206,Kmt2a;Kmt2a;Kmt2a;Kmt2a;Kmt2a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,10,214162,ENSMUSG00000002028,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14681,cg05229784,0.000189313,0.000014,13.51423153,4.88E-33,gain,yes,-0.0000331,0.0000238,-1.389658236,0.165629874,neg,ns,0.011132421,0.006972118,1.596705657,0.111350172,pos,ns,0.953309106,-0.0000371,0.000239771,-0.154739371,0.877127488,neg,ns,0.144086324,Ctnna2,Ctnna2_Exon,6,77243722,77243771,77243722,77243723,50,+,CGCTCAACCTCACCGAGGCGCCCCACAACCTGTCCGGCCTGCTGGGCTTG,"Exon (Lrrtm1-201/Lrrtm1, exon 2 of 3)",6,76881637,77979699,1098063,2,Ctnna2-204,735928,Ctnna2-204;Ctnna2-205;Ctnna2-202;Ctnna2-201;Lrrtm1-201;Lrrtm1-202;Lrrtm1-203;Lrrtm1-204,Ctnna2;Ctnna2;Ctnna2;Ctnna2;Lrrtm1;Lrrtm1;Lrrtm1;Lrrtm1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,16,24,12386,ENSMUSG00000063063,conserved gene and region,6,77243660,77243918,259,*,259,23,0.633204633,0.885930994,0.088803089,1.29E-16,CpGisland,TRUE,U13,Hc-P
17785,cg00860189,-0.00000342,0.00000131,-2.606120409,0.009599625,loss,ns,0.0000031,0.00000223,1.3896497,0.165632464,pos,ns,0.001729794,0.000653692,2.646190306,0.008555833,pos,ns,2.067737676,-0.0000896,0.0000225,-3.984840351,0.0000842,neg,ns,0.962419329,Son,Son_Exon,16,91664967,91665016,91664967,91664968,50,-,CGCAGCTTCTCATTTGACAGTAACTCGATGCAATTCACTTTGTGGAACCA,"Exon (Son-204/Son, exon 7 of 7)",16,91647506,91679207,31702,1,Son-203,17461,Son-203;Son-204;Son-202;Son-208;Son-201;Son-205;Son-212;Son-207,Son;Son;Son;Son;Son;Son;Son;Son,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,31,20658,ENSMUSG00000022961,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17278,cg06607996,0.0000558,0.00000823,6.780226916,6.07E-11,gain,yes,-0.0000194,0.000014,-1.389603296,0.16564655,neg,ns,0.022894291,0.004095255,5.59044375,4.97E-08,pos,ns,7.303659603,-0.000377325,0.000140835,-2.679191437,0.00777401,neg,ns,0.245869916,Zbtb7b,Zbtb7b_Intron,3,89390815,89390864,89390863,89390864,50,-,AAGTGCAGGCACACAAAGGGCCTGATGGTGCATTGTTAGCCCAGCCCCCG,"Intron (Zbtb7b-202/Zbtb7b, intron 1 of 2)",3,89377644,89392069,14426,2,Zbtb7b-202,1205,Zbtb7b-203;Zbtb7b-204;Zbtb7b-202;Zbtb7b-201;Zbtb7b-206;Zbtb7b-208;Zbtb7b-209;Zbtb7b-205;Zbtb7b-207,Zbtb7b;Zbtb7b;Zbtb7b;Zbtb7b;Zbtb7b;Zbtb7b;Zbtb7b;Zbtb7b;Zbtb7b,0;0;0;0;0;0;0;0;3912,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,12,22724,ENSMUSG00000028042,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
10280,cg04805689,-0.0000299,0.00000877,-3.403925804,0.000751582,loss,ns,0.0000207,0.0000149,1.389545158,0.165664199,pos,ns,0.001480205,0.004365548,0.339065073,0.734790274,pos,ns,0.133836601,-0.00024007,0.000150131,-1.599073041,0.110823043,neg,ns,0.758678312,Gopc,Gopc_Exon,10,52353418,52353467,52353466,52353467,50,+,GCTTCTAATTGGTTCCAAAGCTTATCATGAGCAGGTCCCTTCATATCTCG,"Exon (Gopc-202/Gopc, exon 4 of 8)",10,52337024,52382124,45101,2,Gopc-202,28657,Gopc-205;Gopc-202;Gopc-201;Gopc-204;Gopc-206;Gopc-203,Gopc;Gopc;Gopc;Gopc;Gopc;Gopc,-4290;0;0;0;-3018;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,94221,ENSMUSG00000019861,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20392,cg20813234,0.0000554,0.0000896,0.617912316,0.537086811,gain,ns,0.000211607,0.000152289,1.389509279,0.165675091,pos,ns,0.033217031,0.044615489,0.74451792,0.457127212,pos,ns,0.339962925,0.001484841,0.001534323,0.967750195,0.333923537,pos,ns,0.295935153,Csde1,Csde1_fiveUTR,3,103020590,103020639,103020638,103020639,50,+,CGAGAGAAGCGAGATTTATTCCTACGTACCGGGCCGTGCTGCTTATGGCG,Promoter (<=1kb),3,103020607,103057991,37385,1,Csde1-211,0,Csde1-201;Csde1-211;Csde1-207;Csde1-214;Csde1-215;Csde1-216;Csde1-206,Csde1;Csde1;Csde1;Csde1;Csde1;Csde1;Csde1,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,10,229663,ENSMUSG00000068823,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
16762,cg02727970,0.000100746,0.0000239,4.220558496,0.000032,gain,ns,-0.0000563,0.0000406,-1.389478325,0.165684488,neg,ns,0.019243921,0.011880517,1.619788192,0.106294579,pos,ns,0.973488883,-0.00044713,0.00040857,-1.094378622,0.274638545,neg,ns,0.3832175,Lrba,Lrba_Intron,3,86448904,86448953,86448952,86448953,50,-,CGTCTCTTCCTGAAAGACATTCATCTTTTTTCTGTGTCACAGGCTTGCCG,"Intron (Lrba-202/Lrba, intron 37 of 50)",3,86224680,86746712,522033,1,Lrba-202,224224,Lrba-202;Lrba-204;Lrba-201;Lrba-208,Lrba;Lrba;Lrba;Lrba,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,45,80877,ENSMUSG00000028080,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
8287,cg17157665,0.00000503,0.00000254,1.98424531,0.048110045,gain,ns,-0.00000599,0.00000431,-1.389417572,0.165702934,neg,ns,-0.000401756,0.00126255,-0.318209529,0.750540266,neg,ns,0.124626003,0.0000492,0.0000434,1.133584605,0.257844725,pos,ns,0.944440813,Grhpr,Grhpr_Intergenic_upstream,4,44957043,44957092,44957091,44957092,50,-,CTCTGTGACTCTGGACAAAGTATTCAGTATTAATGCAGTTGACCATGACG,Distal Intergenic,4,44981395,44990734,9340,1,Grhpr-201,-24352,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,76238,ENSMUSG00000035637,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27152,cg26756623,0.00000611,0.00000644,0.948796434,0.343463211,gain,ns,0.0000152,0.0000109,1.389194056,0.16577081,pos,ns,0.007294772,0.003204393,2.27649105,0.023498143,pos,ns,1.628966466,-0.000228101,0.000110199,-2.069902982,0.039289395,neg,ns,0.89192342,Gm11445,Gm11445_Intergenic_downstream,2,159712791,159712840,159712791,159712792,50,+,CGTTTATTTTTAAAATTGAAAGATTGGGAAGAGTCATAATGAGATACTAT,Distal Intergenic,2,159777676,159778207,532,2,Gm11445-201,65367,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,100043689,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1284,cg19716117,-0.00000246,0.00000181,-1.35709118,0.175739501,loss,ns,0.00000427,0.00000307,1.389121602,0.165792817,pos,ns,0.000426316,0.000900473,0.473435739,0.636235554,pos,ns,0.196382065,-0.00000211,0.000031,-0.068068947,0.945774633,neg,ns,0.957715015,Zfr,Zfr_Exon,15,12170869,12170918,12170917,12170918,50,-,TGCCTTGACGCTCTGGCTGCTCTACGCCACGCTAAGTGGTTCCAGGTTCG,"Exon (Zfr-201/Zfr, exon 16 of 20)",15,12117831,12185683,67853,1,Zfr-201,53038,Zfr-201;Zfr-207;Zfr-208;Zfr-209;Zfr-206,Zfr;Zfr;Zfr;Zfr;Zfr,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,12,22763,ENSMUSG00000022201,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8489,cg13448855,0.0000362,0.0000135,2.671864375,0.007941816,gain,ns,0.000032,0.000023,1.389105674,0.165797656,pos,ns,0.008041802,0.006742945,1.192624501,0.233928524,pos,ns,0.63091682,-0.000181874,0.000231889,-0.784314779,0.433454328,neg,ns,0.713246789,Gm13475,Gm13475_Intergenic_upstream,2,45227421,45227470,45227469,45227470,50,+,TTACGCTTCTAATTTGTGGCCTTAAATTGCAAACAGAATTTCAGGAGTCG,Distal Intergenic,2,45329232,45329465,234,1,Gm13475-201,-101762,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,12,21,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16512,cg17453843,-0.00000277,0.00000153,-1.807942095,0.071584585,loss,ns,0.00000362,0.0000026,1.389030832,0.165820391,pos,ns,0.001246502,0.000762728,1.634267709,0.10321772,pos,ns,0.98624574,-0.0000518,0.0000262,-1.975801551,0.04906375,neg,ns,0.965052444,Camkmt,Camkmt_Intron,17,85293641,85293690,85293641,85293642,50,-,CGCTTACCTGTCAGTCAGCAAAATTGTCCCTGAATAAAAATGAACCCCAT,"Intron (Camkmt-201/Camkmt, intron 3 of 10)",17,85090552,85458588,368037,1,Camkmt-201,203089,Camkmt-201,Camkmt,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,41,44,73582,ENSMUSG00000071037,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19983,cg06216926,0.00000952,0.0000162,0.586533639,0.557943815,gain,ns,-0.0000383,0.0000276,-1.388834148,0.16588015,neg,ns,-0.012791467,0.008082523,-1.582608072,0.114530476,neg,ns,0.941078935,0.000163651,0.000277957,0.588763909,0.556448408,pos,ns,0.072945328,Atxn3,Atxn3_fiveUTR,12,101958130,101958179,101958178,101958179,50,+,TCACTTTCTCGTGGAAGATGGACTCCATGTTTATTTGTCTGGAGCCAACG,Promoter (<=1kb),12,101932949,101958148,25200,2,Atxn3-202,0,Atxn3-201;Atxn3-204;Atxn3-205;Atxn3-202,Atxn3;Atxn3;Atxn3;Atxn3,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,1,110616,ENSMUSG00000021189,conserved gene and region,12,101958028,101958412,385,*,385,47,0.714285714,0.978848859,0.122077922,1.93E-40,CpGisland,TRUE,U1,Pr-A
3641,cg26502229,-0.00000723,0.00000209,-3.457299825,0.000621852,loss,ns,0.00000493,0.00000355,1.388816797,0.165885422,pos,ns,0.000948919,0.001040315,0.912145676,0.36240082,pos,ns,0.440810828,-0.0000162,0.0000358,-0.452113708,0.651503256,neg,ns,0.962034807,Mboat2,Mboat2_fiveUTR,12,24934561,24934610,24934609,24934610,50,-,TCACAGCCCAATGATGATCATTACTCAGAAGATCACTAGTTTGGCTTGCG,5' UTR,12,24830879,24939302,108424,1,Mboat2-205,103682,Mboat2-205;Mboat2-204;Mboat2-201;Mboat2-202;Mboat2-206,Mboat2;Mboat2;Mboat2;Mboat2;Mboat2,0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,3,67216,ENSMUSG00000020646,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16806,cg09571697,-0.00000339,0.00000569,-0.596358438,0.551371016,loss,ns,-0.0000134,0.00000966,-1.388801116,0.165890188,neg,ns,0.001998899,0.002830663,0.706159309,0.480619436,pos,ns,0.318198671,-0.000148674,0.0000973,-1.527269918,0.127713544,neg,ns,0.893645683,Lrba,Lrba_Intron,3,86556893,86556942,86556893,86556894,50,+,CGTGAAAGTGCAATGCAAATTATGACAGTTACAACCTTCTGTTTTGTTTA,"Intron (Lrba-202/Lrba, intron 40 of 50)",3,86224680,86746712,522033,1,Lrba-202,332213,Lrba-202;Lrba-204;Lrba-201;Lrba-203;Lrba-205;Lrba-206,Lrba;Lrba;Lrba;Lrba;Lrba;Lrba,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,45,80877,ENSMUSG00000028080,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25730,cg02556899,0.0000295,0.00000738,3.991797929,0.0000819,gain,ns,0.0000174,0.0000125,1.388626614,0.165943223,pos,ns,0.011018683,0.003672857,3.000030342,0.002918483,pos,ns,2.534842857,-0.000162871,0.000126309,-1.289461623,0.19819888,neg,ns,0.511754788,Lhx9,Lhx9_Intron,1,138844319,138844368,138844367,138844368,50,+,AATGTAATTAGCCCCTTTGGATGGGAATCAATGAGCTTTTCAAACCCACG,"Intron (Lhx9-203/Lhx9, intron 2 of 6)",1,138825186,138847579,22394,2,Lhx9-203,3211,Lhx9-201;Lhx9-203;Lhx9-205;Lhx9-202;Lhx9-204;Lhx9-207,Lhx9;Lhx9;Lhx9;Lhx9;Lhx9;Lhx9,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,12,16876,ENSMUSG00000019230,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
11909,cg08695077,0.000053,0.00000988,5.362243128,0.000000161,gain,yes,-0.0000233,0.0000168,-1.3884895,0.165984905,neg,ns,0.00875947,0.004914896,1.782228884,0.075690578,pos,ns,1.120958178,-0.00032394,0.000169023,-1.91654279,0.056215302,neg,ns,0.136097071,Tank,Tank_Intergenic_downstream,2,61656440,61656489,61656440,61656441,50,+,CGGGGCAACTAATTATCCGTCTCATTTGAGAAGAGCAGCATTTGAGGCAG,Distal Intergenic,2,61643831,61649977,6147,1,Tank-211,12609,Tank-205;Tank-201;Tank-206;Tank-203;Tank-204;Tank-202;Tank-208,Tank;Tank;Tank;Tank;Tank;Tank;Tank,0;0;0;0;0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,17,21353,ENSMUSG00000064289,mapped to different genes,2,61656429,61656917,489,*,489,60,0.707566462,0.985887097,0.122699387,1.21E-51,CpGisland,TRUE,U3,Pr-B
9861,cg23589675,0.0000307,0.0000135,2.276465147,0.02349971,gain,ns,0.0000318,0.0000229,1.388474842,0.165989361,pos,ns,0.022364246,0.006710594,3.332677519,0.000964312,pos,ns,3.015782523,-0.000282282,0.000230777,-1.223181592,0.22219012,neg,ns,0.318674205,Nfe2l3,Nfe2l3_Exon,6,51269808,51269857,51269808,51269809,50,+,CGGCGACCACAGCCTCTAGAGACAAAGTTCTGTAGTGCACTGACTTCTAT,"Exon (Mir148a-201/Mir148a-201, exon 1 of 1)",6,51432670,51458768,26099,1,Nfe2l3-201,-162813,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,5,18025,ENSMUSG00000029832,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4472,cg08167463,-0.00000404,0.00000196,-2.065560428,0.039700819,loss,ns,0.00000461,0.00000332,1.388393735,0.166014021,pos,ns,-0.000351981,0.000973108,-0.361708168,0.717816539,neg,ns,0.143986539,0.00000643,0.0000335,0.192198754,0.847712362,pos,ns,0.954626101,Stk38,Stk38_threeUTR,17,28984130,28984179,28984178,28984179,50,-,TAGAACATTTTCACAACCCACAAACTGTCTGCCTCCACTAGAATGTCACG,3' UTR,17,28970880,29007995,37116,2,Stk38-201,23816,Stk38-201;Stk38-202;Stk38-218;Stk38-209;Stk38-212;Stk38-223;Stk38-208;Stk38-203;Stk38-211;Stk38-225;Stk38-221;Stk38-222;Stk38-220;Stk38-204;Stk38-206;Stk38-217;Stk38-213;Stk38-207,Stk38;Stk38;Stk38;Stk38;Stk38;Stk38;Stk38;Stk38;Stk38;Stk38;Stk38;Stk38;Stk38;Stk38;Stk38;Stk38;Stk38;Stk38,0;0;0;-1944;-384;0;-3885;-3801;-4370;0;0;0;0;-4385;0;0;0;7239,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,1,106504,ENSMUSG00000024006,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8016,cg02928435,0.0000274,0.00000303,9.027917137,1.90E-17,gain,yes,-0.00000715,0.00000515,-1.388360114,0.166024244,neg,ns,0.003092209,0.001509119,2.049015645,0.041302139,pos,ns,1.384027455,-0.0000335,0.0000519,-0.64534929,0.519178205,neg,ns,0.073183416,Pax2,Pax2_Intergenic_upstream,19,44684159,44684208,44684159,44684160,50,-,CGGCCATTACGGGAAAGTTAGTGTGAAACATGTTAAATTATCCCCAAAGT,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-71886,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,19,44684083,44684169,87,*,87,12,0.643678161,1.338461539,0.137931035,3.16E-11,CpGisland,TRUE,U13,Hc-P
2295,cg03479969,-0.0000501,0.000011,-4.547244859,0.00000781,loss,ns,0.000026,0.0000187,1.388232048,0.166063189,pos,ns,0.004034079,0.005479189,0.736254868,0.462132363,pos,ns,0.335233617,-0.000326758,0.000188429,-1.734116685,0.083891499,neg,ns,0.48908971,Gm28343,Gm28343_Intergenic_upstream,1,18961661,18961710,18961709,18961710,50,+,CTTTGCTCCAGGCCACATTCAATTATGTCGGACTGCATTAGTCCCTGGCG,Distal Intergenic,1,19037266,19037377,112,1,Gm28343-201,-75556,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,3,108167808,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25980,cg19460559,0.0000977,0.0000125,7.789743044,1.02E-13,gain,yes,0.0000296,0.0000213,1.388041096,0.16612127,pos,ns,0.009104494,0.006241985,1.458589611,0.145690517,pos,ns,0.836568714,-0.0000809,0.000214661,-0.376849998,0.706542906,neg,ns,0.635201438,Tmem164,Tmem164_Exon,X,142682904,142682953,142682904,142682905,50,+,CGTCATCTACCTGCTCAACCCCTGTCACCTGGTCACCATGATGCATGTGA,"Exon (Tmem164-201/Tmem164, exon 2 of 7)",20,142681406,142843494,162089,1,Tmem164-204,1498,Tmem164-204;Tmem164-202;Tmem164-205;Tmem164-201;Tmem164-206;Tmem164-208;Tmem164-207,Tmem164;Tmem164;Tmem164;Tmem164;Tmem164;Tmem164;Tmem164,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,15,209497,ENSMUSG00000047045,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16539,cg11315254,0.00000684,0.00000288,2.376549817,0.01808241,gain,ns,-0.00000679,0.00000489,-1.387997591,0.166134505,neg,ns,-0.004967743,0.001433187,-3.466221351,0.000602327,neg,ns,3.22016783,0.000179734,0.0000493,3.646676881,0.000311489,pos,ns,0.943363383,Camkmt,Camkmt_Intron,17,85393664,85393713,85393664,85393665,50,-,CGGATCATATTGATTTTATGGTTGCCTCGATGAGCAGAAACATTTTACCT,"Intron (Camkmt-201/Camkmt, intron 5 of 10)",17,85090552,85458588,368037,1,Camkmt-201,303112,Camkmt-201,Camkmt,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,41,44,73582,ENSMUSG00000071037,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21356,cg27113413,0.000024,0.00000325,7.394406428,1.34E-12,gain,yes,-0.00000767,0.00000552,-1.387890828,0.166166988,neg,ns,0.001368797,0.001618346,0.845800143,0.398316617,pos,ns,0.399771575,-0.000000978,0.0000557,-0.017568527,0.985994366,neg,ns,0.119843229,Kcnc4,Kcnc4_Exon,3,107458805,107458854,107458853,107458854,50,+,ATCTCCTCCTTCAGACATGTTTTGGACGGAGGCTTGTTCCCCGACTTGCG,Promoter (<=1kb),3,107438303,107459552,21250,2,Kcnc4-201,698,Kcnc4-201;Kcnc4-202,Kcnc4;Kcnc4,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,12,99738,ENSMUSG00000027895,conserved gene and region,3,107458518,107458984,467,*,467,47,0.665952891,0.908861284,0.100642398,4.28E-36,CpGisland,TRUE,U13,Hc-P
22239,cg18183671,0.0000361,0.0000104,3.484088061,0.000564936,gain,ns,0.0000245,0.0000176,1.387776232,0.166201859,pos,ns,0.005065063,0.00516275,0.981078511,0.327319062,pos,ns,0.485028702,0.0000484,0.000177547,0.272349626,0.785534514,pos,ns,0.743719168,Arpp21,Arpp21_Intron,9,112188002,112188051,112188050,112188051,50,-,TGCACCGAAGATTACTCACTTCAATTTTAACCTTTTTTAGTGAAATCTCG,"Intron (Arpp21-208/Arpp21, intron 1 of 17)",9,112065236,112234423,169188,2,Arpp21-208,46372,Arpp21-202;Arpp21-203;Arpp21-229;Arpp21-221;Arpp21-208;Arpp21-223;Arpp21-201;Arpp21-207;Arpp21-210;Arpp21-211;Arpp21-204;Arpp21-217;Arpp21-215;Arpp21-225;Arpp21-214;Arpp21-212;Arpp21-231;Arpp21-230;Arpp21-222;Arpp21-218;Arpp21-206;Arpp21-205;Arpp21-224;Arpp21-213;Arpp21-209;Arpp21-228;Arpp21-226;Arpp21-219;Arpp21-227;Arpp21-216,Arpp21;Arpp21;Arpp21;Arpp21;Arpp21;Arpp21;Arpp21;Arpp21;Arpp21;Arpp21;Arpp21;Arpp21;Arpp21;Arpp21;Arpp21;Arpp21;Arpp21;Arpp21;Arpp21;Arpp21;Arpp21;Arpp21;Arpp21;Arpp21;Arpp21;Arpp21;Arpp21;Arpp21;Arpp21;Arpp21,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;-76;-73;-98;-53;-76;-122;-1909;-2053;-2066;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,4,74100,ENSMUSG00000032503,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6897,cg06431228,-0.00000182,0.00000314,-0.580716532,0.561853433,loss,ns,-0.0000074,0.00000533,-1.38758177,0.166261045,neg,ns,-0.000963134,0.001562001,-0.616603086,0.537949105,neg,ns,0.269258811,0.00000818,0.0000537,0.152187547,0.879138015,pos,ns,0.899890818,Arhgap26,Arhgap26_threeUTR,18,39357762,39357811,39357810,39357811,50,-,TTCCCTGCCATCCAAACCTGCACTTGCTTTTTGACAGGCCAGAAGAAGCG,3' UTR,18,38993145,39376284,383140,1,Arhgap26-201,364617,Arhgap26-201;Arhgap26-205;Arhgap26-210;Arhgap26-209;Arhgap26-206;Arhgap26-208;Arhgap26-211;Arhgap26-204,Arhgap26;Arhgap26;Arhgap26;Arhgap26;Arhgap26;Arhgap26;Arhgap26;Arhgap26,0;0;0;0;0;0;0;-4772,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,6,71302,ENSMUSG00000036452,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15382,cg12529384,-0.00000309,0.00000144,-2.142192351,0.03295681,loss,ns,0.0000034,0.00000245,1.38757265,0.166263822,pos,ns,0.000745104,0.000717571,1.038370553,0.299906801,pos,ns,0.523013685,-0.00000174,0.0000247,-0.070630574,0.943737319,neg,ns,0.051298903,Btbd2,Btbd2_Exon,10,80656150,80656199,80656150,80656151,50,+,CGAGCTGAGCCCCTTGCCCACCAGGAAGTGCACGTCGCACAGCACCTCGT,Promoter (<=1kb),10,80642617,80656494,13878,2,Btbd2-202,295,Btbd2-202;Btbd2-201;Btbd2-203,Btbd2;Btbd2;Btbd2,0;0;-12,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,208198,ENSMUSG00000003344,conserved gene and region,10,80656108,80656636,529,*,529,72,0.754253308,0.978371436,0.13610586,1.23E-65,CpGisland,TRUE,NA,NRS
25986,cg17261968,0.000000103,0.00000265,0.038987864,0.96892516,gain,ns,-0.00000625,0.0000045,-1.387540926,0.166273479,neg,ns,0.000657265,0.001318805,0.49837897,0.618570362,pos,ns,0.208610893,0.00000973,0.0000454,0.214630461,0.830196561,pos,ns,0.046873886,Tnrc18,Tnrc18_fiveUTR,5,142817396,142817445,142817444,142817445,50,-,CAGCCGCCTCACACTTTTTGCCCGCCTTTCCTTTTTTTGGTAGAAAACCG,Promoter (<=1kb),5,142754789,142817662,62874,2,Tnrc18-201,217,Tnrc18-201;Tnrc18-205,Tnrc18;Tnrc18,0;-16,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,7,231861,ENSMUSG00000039477,conserved gene but different region,5,142816996,142817607,612,*,612,69,0.671568628,1.030705394,0.112745098,1.90E-56,CpGisland,TRUE,U1,Pr-A
23312,cg11413152,0.0000135,0.00000427,3.15926987,0.001737651,gain,ns,-0.0000101,0.00000725,-1.387478887,0.166292365,neg,ns,-0.003187836,0.002125456,-1.499836337,0.134674516,neg,ns,0.870714577,0.000108765,0.0000731,1.488008157,0.137765233,pos,ns,0.815121912,Eri3,Eri3_Intron,4,117673478,117673527,117673526,117673527,50,+,TCAAGGGAGAAATTACACATTTACTCTGCCTTTTTCTTACTGCGACGGCG,"Intron (Eri3-201/Eri3, intron 8 of 8)",4,117550365,117674297,123933,1,Eri3-201,123113,Dmap1-206;Dmap1-201;Dmap1-204;Eri3-201;Eri3-206;Eri3-203,Dmap1;Dmap1;Dmap1;Eri3;Eri3;Eri3,8726;8746;8456;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,82,97,140546,ENSMUSG00000033423,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27575,cg16109946,-0.0000229,0.00000738,-3.108859453,0.002052365,loss,ns,-0.0000174,0.0000125,-1.387474387,0.166293736,neg,ns,-0.005667078,0.00367096,-1.543759362,0.12366682,neg,ns,0.907746805,0.0000448,0.000126244,0.354732038,0.723031545,pos,ns,0.835507885,Ddr2,Ddr2_Exon,1,170006807,170006856,170006855,170006856,50,+,GTGATGTCCTCATCTGGAATCTGGCCTCCTGACATGCCCAGAGGATAGCG,"Exon (Ddr2-205/Ddr2, exon 4 of 18)",1,169972307,170110561,138255,2,Ddr2-205,103705,Ddr2-205;Ddr2-202;Ddr2-201;Ddr2-203,Ddr2;Ddr2;Ddr2;Ddr2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,4,18214,ENSMUSG00000026674,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25436,cg21338479,-0.00000265,0.00000134,-1.975690799,0.049076365,loss,ns,0.00000316,0.00000228,1.387162054,0.166388845,pos,ns,0.001183397,0.000668254,1.770877598,0.077563666,pos,ns,1.110341673,-0.0000213,0.000023,-0.92747121,0.354403466,neg,ns,0.04893676,Cux1,Cux1_Exon,5,136567172,136567221,136567220,136567221,50,-,CCTGACCTGCAGCTGCTGTAAATCAAAGCGCTTCCAATATTGAAACATCG,Promoter (<=1kb),5,136248135,136567248,319114,2,Cux1-207,27,Cux1-207;Cux1-211;Cux1-203;Cux1-213;Cux1-201;Cux1-204;Cux1-212;Cux1-206;Cux1-210;Cux1-214,Cux1;Cux1;Cux1;Cux1;Cux1;Cux1;Cux1;Cux1;Cux1;Cux1,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,21,13047,ENSMUSG00000029705,conserved gene and region,5,136566666,136567259,594,*,594,56,0.668350168,0.844478294,0.094276094,3.36E-41,CpGisland,TRUE,U1,Pr-A
24242,cg23204838,-0.000000721,0.00000997,-0.07236908,0.942354859,loss,ns,0.0000235,0.0000169,1.387083785,0.166412685,pos,ns,-0.00576117,0.004961809,-1.161102826,0.246493374,neg,ns,0.608194751,0.000455108,0.000170636,2.66712753,0.008052028,pos,ns,0.692217679,Gm12902,Gm12902_Intergenic_downstream,4,124150516,124150565,124150564,124150565,50,+,AATTTCTGCCTGATTTACAGTTAATATTGCACACTCCCATCACCCTGCCG,Distal Intergenic,4,123926234,123926555,322,1,Gm12902-201,224282,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,34,34,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5620,cg00826905,-0.0000498,0.0000125,-3.980381681,0.0000858,loss,ns,0.0000295,0.0000213,1.387073027,0.166415962,pos,ns,0.006457259,0.006230169,1.036450004,0.300800044,pos,ns,0.521722105,-0.000210826,0.000214255,-0.983994538,0.325885546,neg,ns,0.817192966,Pbx3,Pbx3_Intron,2,34359940,34359989,34359940,34359941,50,-,CGGATGAGAGGGCCACAAAAACACTTAATTCATTGCCCACAAAATTATGT,"Intron (Pbx3-202/Pbx3, intron 2 of 7)",2,34171457,34372038,200582,2,Pbx3-202,12049,Pbx3-202;Pbx3-201;Pbx3-206;Pbx3-207;Pbx3-209;Pbx3-204;Pbx3-205;Pbx3-203,Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,82,18516,ENSMUSG00000038718,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21877,cg03569829,0.00000252,0.00000183,1.378599661,0.169012234,gain,ns,-0.00000431,0.00000311,-1.386938774,0.166456861,neg,ns,-0.000428705,0.000911005,-0.470585059,0.638268007,neg,ns,0.194996924,0.0000347,0.0000313,1.10675536,0.26925779,pos,ns,0.945904549,Rnf11,Rnf11_Exon,4,109454320,109454369,109454368,109454369,50,+,TCTCATCAACCAGTCATCTATACAGTCCAGGTGATAGATGTGCATGCACG,"Exon (Rnf11-201/Rnf11, exon 3 of 3)",4,109451098,109476675,25578,2,Rnf11-201,22306,Rnf11-201;Rnf11-202;Rnf11-203,Rnf11;Rnf11;Rnf11,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,29864,ENSMUSG00000028557,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
718,cg23078810,0.000102634,0.0000162,6.344718074,7.89E-10,gain,yes,-0.0000381,0.0000275,-1.386901242,0.166468297,neg,ns,0.012806818,0.0080511,1.590691729,0.112698196,pos,ns,0.948083037,-0.000735798,0.000276877,-2.657492947,0.00828045,neg,ns,0.496743376,Nipbl,Nipbl_Exon,15,8291507,8291556,8291555,8291556,50,-,GATGACATCCATGACGTCAACACTTTCATTCATCTGTGCTGCCAACTCCG,"Exon (Nipbl-201/Nipbl, exon 47 of 47)",15,8290617,8444463,153847,2,Nipbl-201,152907,Nipbl-201,Nipbl,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,19,36,71175,ENSMUSG00000022141,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21932,cg14007694,-0.00000863,0.0000038,-2.269188598,0.023943776,loss,ns,0.00000896,0.00000646,1.386728431,0.166520957,pos,ns,-0.001029424,0.00189245,-0.543963797,0.586857388,neg,ns,0.231467424,-0.0000113,0.0000651,-0.173734167,0.862187777,neg,ns,0.933667225,Gm9661,Gm9661_Exon,12,109743310,109743359,109743358,109743359,50,+,CCAGTTGGAAAGTAATTGTTTCTAATGTACTTCACCTGGTCCACTAGCCG,"Exon (Mirg-212/Mirg-212, exon 14 of 17)",12,109827003,109828124,1122,1,Gm9661-201,-83644,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,8,675987,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1127,cg09434548,-0.00000238,0.00000671,-0.355022319,0.722814286,loss,ns,0.0000158,0.0000114,1.386654301,0.166543549,pos,ns,-0.000920741,0.003339796,-0.275687612,0.78297169,neg,ns,0.10625394,0.0000709,0.000114855,0.616883548,0.537764326,pos,ns,0.895892338,Gm14513,Gm14513_Intergenic_upstream,X,11708428,11708477,11708476,11708477,50,-,AGGGTGGGAAGCACATGGGCCACTTTTATGTAACACTCCTCTGATACACG,Distal Intergenic,20,11684002,11684124,123,2,Gm14513-201,-24353,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,9,668984,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4160,cg10603464,-0.0000152,0.00000517,-2.948589691,0.003434955,loss,ns,0.0000122,0.00000878,1.386414263,0.166616723,pos,ns,0.000631417,0.002573632,0.245340713,0.806354968,pos,ns,0.093473734,-0.0000488,0.0000885,-0.55100162,0.582029447,neg,ns,0.532569236,Gm19164,Gm19164_Intron,8,27008704,27008753,27008704,27008705,50,+,CGCCTCTATTGCCAGATCAGTATTGTTGCCCCTGACAGCTAATGAGGTTG,"Intron (Gm32389-201/Gm32389-201, intron 1 of 1)",8,27019454,27020093,640,2,Gm19164-201,11340,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,100418365,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13130,cg26039561,-0.000000626,0.0000105,-0.059703213,0.952430482,loss,ns,0.0000247,0.0000178,1.386373362,0.166629194,pos,ns,0.006248772,0.005222366,1.196540516,0.232399997,pos,ns,0.633763882,0.0000554,0.000179597,0.308567342,0.757857921,pos,ns,0.383985373,Dnah2,Dnah2_Intron,11,69547410,69547459,69547458,69547459,50,+,GCCCTCCCTGTTTCCATCAATAGTGCCTAATTAAGACAAAGCCAGCAGCG,"Intron (Dnah2-202/Dnah2, intron 1 of 85)",11,69420809,69549108,128300,2,Dnah2-202,1649,Dnah2-201;Dnah2-202;Dnah2-203,Dnah2;Dnah2;Dnah2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,10,327954,ENSMUSG00000005237,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
12649,cg08854986,0.0000817,0.00000953,8.573675451,4.84E-16,gain,yes,-0.0000224,0.0000162,-1.386202082,0.166681425,neg,ns,0.011942443,0.004743422,2.51768516,0.012316651,pos,ns,1.909507376,-0.000439078,0.000163126,-2.691649331,0.007496013,neg,ns,0.101461571,Astn2,Astn2_Intron,4,66402919,66402968,66402967,66402968,50,+,ACAACATTTTTGTAAACGCTCTCCGAGATAATTAAGCTATCAATTACCCG,"Intron (Astn2-202/Astn2, intron 1 of 21)",4,65380803,66404483,1023681,2,Astn2-202,1515,Astn2-202;Astn2-201,Astn2;Astn2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,7,56079,ENSMUSG00000028373,conserved gene and region,4,66402789,66403061,273,*,273,25,0.619047619,0.956150182,0.091575092,2.33E-18,CpGisland,TRUE,U3,Pr-B
7374,cg09863012,0.00000792,0.0000136,0.582944283,0.560354613,gain,ns,-0.000032,0.0000231,-1.386145975,0.166698538,neg,ns,-0.00237284,0.00676084,-0.350968285,0.725850535,neg,ns,0.139152799,0.000158183,0.000232505,0.6803443,0.496794267,pos,ns,0.410880618,Gm16415,Gm16415_Intergenic_downstream,18,42454236,42454285,42454236,42454237,50,-,CGAAACCTCTCTGCAAACTCTTTGTAGATTCCCATCTGTGACTTGATAAA,Distal Intergenic,18,42441019,42441507,489,1,Gm16415-201,13266,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,4,100042767,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20581,cg13133438,-0.00000147,0.00000151,-0.9696491,0.332977348,loss,ns,0.00000357,0.00000257,1.385846119,0.166790015,pos,ns,0.00108021,0.000754005,1.432628809,0.152971564,pos,ns,0.815389294,-0.0000517,0.0000259,-1.993148632,0.047121432,neg,ns,0.968160764,Srek1,Srek1_fiveUTR,13,103764318,103764367,103764366,103764367,50,+,ATGAACCAAACGATATCAAGCATGGACGCTTTCCCAGGACGGTGTTTTCG,Promoter (<=1kb),13,103739348,103764582,25235,2,Srek1-204,215,Srek1-204;Srek1-201;Srek1-210;Srek1-205;Srek1-209;Srek1-206;Srek1-202;Srek1-208,Srek1;Srek1;Srek1;Srek1;Srek1;Srek1;Srek1;Srek1,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,7,10,218543,ENSMUSG00000032621,mapped to different genes,13,103764328,103764416,89,*,89,9,0.516853933,1.525714286,0.101123596,0.000000335,CpGisland,TRUE,U11,Tr-P
19398,cg06144801,-0.00000958,0.00000347,-2.759970161,0.006124682,loss,ns,-0.00000817,0.00000589,-1.385632702,0.166855145,neg,ns,-0.001839748,0.001726761,-1.065432882,0.287509197,neg,ns,0.541348258,-0.0000177,0.0000594,-0.298211767,0.765741318,neg,ns,0.910642387,Smarce1,Smarce1_Exon,11,99225122,99225171,99225170,99225171,50,-,CCCTGGTGTGCTGGGCATTTGCTGATGGAAACAAATGAGACAAAAACACG,"Exon (Smarce1-201/Smarce1, exon 4 of 11)",11,99209047,99231017,21971,2,Smarce1-201,5846,Smarce1-201;Smarce1-205;Smarce1-204;Smarce1-203;Smarce1-202,Smarce1;Smarce1;Smarce1;Smarce1;Smarce1,0;-4291;0;0;5275,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,57376,ENSMUSG00000037935,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17345,cg12193334,-0.000012,0.00000207,-5.800822254,1.63E-08,loss,yes,0.00000486,0.00000351,1.385552771,0.166879543,pos,ns,0.000120032,0.001028625,0.116691681,0.907179944,pos,ns,0.04230656,0.00000155,0.0000354,0.043776159,0.965111015,pos,ns,0.947997847,Agap1,Agap1_Intron,1,89784719,89784768,89784767,89784768,50,-,AACTAAATGATTGTAAAATAAGTTATGAGTGTCCTTGGGCCTGTCTGCCG,"Intron (Agap1-201/Agap1, intron 12 of 17)",1,89454806,89897617,442812,1,Agap1-201,329913,Agap1-201;Agap1-204;Agap1-202;Agap1-205,Agap1;Agap1;Agap1;Agap1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,29,347722,ENSMUSG00000055013,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25040,cg27512407,-0.0000343,0.0000109,-3.142589656,0.001836478,loss,ns,0.0000257,0.0000185,1.385531142,0.166886145,pos,ns,-0.00752373,0.005431754,-1.385138372,0.167006077,neg,ns,0.777267726,0.0000309,0.000186798,0.165487772,0.868667941,pos,ns,0.373895913,Fgfr2,Fgfr2_Intron,7,131777838,131777887,131777886,131777887,50,-,CTTAGCTTGTCTGGCAATCATGTTAGTGATTATATGGGTAATGAAACACG,"Intron (Fgfr2-217/Fgfr2, intron 2 of 6)",7,130162451,133123350,2960900,2,Fgfr2-217,1345463,Fgfr2-217,Fgfr2,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,58,79,14183,ENSMUSG00000030849,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13756,cg15452502,-0.0000073,0.00000879,-0.830237399,0.40704349,loss,ns,-0.0000207,0.0000149,-1.385489357,0.166898901,neg,ns,0.010660055,0.004374224,2.437016452,0.015371259,pos,ns,1.813290563,-0.000258189,0.000150429,-1.716350073,0.087096957,neg,ns,0.944518521,Gm11235,Gm11235_Intergenic_upstream,4,72382581,72382630,72382629,72382630,50,-,ATTTTCTGTGAAGTTCTGTCAAGTGCTCATCAAGCACCCACTTATCTCCG,Distal Intergenic,4,72542666,72542998,333,1,Gm11235-201,-160085,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,8,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19097,cg10247007,-0.00000133,0.00000164,-0.811802392,0.417527928,loss,ns,0.00000386,0.00000278,1.385480175,0.166901704,pos,ns,0.00285843,0.000815304,3.505968878,0.000522103,pos,ns,3.282243653,-0.0000861,0.000028,-3.07069376,0.002324715,neg,ns,0.064726665,Ppp1r1b,Ppp1r1b_Promoter,11,98342624,98342673,98342672,98342673,50,-,ACCTCGGGGGGCACCAGGCAGTGGCCAGAGCAGGGGGTCTCCAGGTGCCG,Promoter (5-6kb),11,98348404,98357796,9393,1,Ppp1r1b-201,-5780,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,16,16,19049,ENSMUSG00000061718,conserved gene and region,11,98342672,98342836,165,*,165,11,0.624242424,0.714004721,0.066666667,0.000000724,CpGisland,TRUE,U3,Pr-B
26203,cg14048083,0.00000115,0.00000784,0.147100633,0.883148211,gain,ns,-0.0000185,0.0000133,-1.385162976,0.166998562,neg,ns,-0.01225262,0.003903775,-3.13865896,0.001860511,neg,ns,2.730367874,0.000310174,0.000134251,2.310412063,0.021521644,pos,ns,0.783676234,Gm5857,Gm5857_Intergenic_downstream,3,144378331,144378380,144378379,144378380,50,+,GCAAAGGGATGGGCCTCAGCTGACATGAATGCAATTTATTGTTTTCCACG,Distal Intergenic,3,144427180,144427672,493,2,Gm5857-201,49292,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,9,545572,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13908,cg07727031,0.0000128,0.00000489,2.616781741,0.00931131,gain,ns,0.0000115,0.00000831,1.385078339,0.167024414,pos,ns,0.000963337,0.002433375,0.395884984,0.692462203,pos,ns,0.159603927,0.00008,0.0000837,0.955948778,0.339842984,pos,ns,0.768511244,Cir1,Cir1_Exon,2,73287604,73287653,73287652,73287653,50,-,ATTACCTGTGATGGATCATTTGCGGTCAAGTTTCTCCCCAGTACATTTCG,"Exon (Cir1-201/Cir1, exon 8 of 10)",2,73283105,73312701,29597,2,Cir1-201,25048,Cir1-201;Cir1-202;Sp9-202,Cir1;Cir1;Sp9,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,4,66935,ENSMUSG00000041777,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12189,cg17368212,0.000000921,0.00000289,0.318472878,0.750340718,gain,ns,0.0000068,0.00000491,1.385033285,0.167038176,pos,ns,0.002406132,0.001438769,1.672354106,0.09546343,pos,ns,1.020162964,-0.0000798,0.0000495,-1.61192733,0.107995344,neg,ns,0.942732274,Map2k5,Map2k5_Intron,9,63296092,63296141,63296092,63296093,50,-,CGGCAATTCATCACAAGCTGTCATGGATGACTTCGTTTATTTGCTGGAGT,"Intron (Map2k5-201/Map2k5, intron 9 of 21)",9,63163768,63377902,214135,2,Map2k5-201,81761,Map2k5-201;Map2k5-202,Map2k5;Map2k5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,34,37,23938,ENSMUSG00000058444,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25246,cg16442886,0.000035,0.0000114,3.063136186,0.002382443,gain,ns,-0.0000269,0.0000194,-1.384827249,0.167101124,neg,ns,0.003400278,0.005689703,0.597619584,0.550530086,pos,ns,0.259218942,-0.0000138,0.000195668,-0.070527648,0.94381917,neg,ns,0.780722787,Hao1,Hao1_Intergenic_downstream,2,134215040,134215089,134215040,134215041,50,-,CGACCGGGACAAAAATTATAATTGACATCATCTGTGGGAAATATTTCATA,Distal Intergenic,2,134530760,134554307,23548,2,Hao1-202,339267,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,4,15112,ENSMUSG00000027261,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5790,cg06917080,-0.0000254,0.0000108,-2.343084413,0.019756994,loss,ns,0.0000255,0.0000184,1.384792663,0.167111692,pos,ns,-0.002122858,0.005388616,-0.393952356,0.693887058,neg,ns,0.158711213,-0.0000989,0.000185314,-0.533719383,0.593918175,neg,ns,0.776149064,Kirrel3,Kirrel3_Intron,9,34791529,34791578,34791529,34791530,50,+,CGTGCTGCTGAAGGTAATATTTCTGGCATTCATTTAATGAAATTGACATT,"Intron (Kirrel3-202/Kirrel3, intron 2 of 16)",9,34486126,35035280,549155,1,Kirrel3-202,305403,Kirrel3-202;Kirrel3-206;Kirrel3-209;Kirrel3-201;Kirrel3-208;Kirrel3-205,Kirrel3;Kirrel3;Kirrel3;Kirrel3;Kirrel3;Kirrel3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,21,67703,ENSMUSG00000032036,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22408,cg26930643,0.0000081,0.00000288,2.811963249,0.005237884,gain,ns,0.00000677,0.00000489,1.384743352,0.167126761,pos,ns,0.004575532,0.001433329,3.192242062,0.001556599,pos,ns,2.807823171,-0.000164375,0.0000493,-3.334716606,0.000957514,neg,ns,0.045632126,Trabd2b,Trabd2b_Promoter,4,114405936,114405985,114405984,114405985,50,+,AAGTTTGGAAAGTTGGGAAGTGGCTGCTGCGGGCTTCGCCTCCCTCCGCG,Promoter (<=1kb),4,114406724,114615098,208375,1,Trabd2b-201,-739,Trabd2b-201,Trabd2b,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,5,666048,ENSMUSG00000070867,conserved gene and region,4,114405900,114406950,1051,*,1051,125,0.773549001,0.820427153,0.118934348,5.09E-105,CpGisland,TRUE,U3,Pr-B
20995,cg09033273,-0.00000316,0.00000238,-1.329381655,0.184699551,loss,ns,0.0000056,0.00000404,1.384629757,0.167161478,pos,ns,0.001183338,0.001184151,0.999313429,0.318422267,pos,ns,0.496996569,-0.0000509,0.0000407,-1.249221089,0.212526645,neg,ns,0.94336501,Tanc2,Tanc2_threeUTR,11,105923258,105923307,105923258,105923259,50,+,CGATCCAGGACCACACCATTCATGGGGATCATAGATAAAACAGCACGGAC,3' UTR,11,105589991,105929304,339314,1,Tanc2-202,333267,Tanc2-202;Tanc2-204;Tanc2-201,Tanc2;Tanc2;Tanc2,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,20,77097,ENSMUSG00000053580,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15551,cg25919581,0.0000215,0.00000502,4.291603308,0.0000237,gain,ns,-0.0000118,0.00000853,-1.384471269,0.167209925,neg,ns,-0.005978228,0.00249845,-2.392774513,0.017316465,neg,ns,1.761540767,0.00000807,0.0000859,0.093875831,0.925268438,pos,ns,0.815320012,Map3k9,Map3k9_Exon,12,81732009,81732058,81732009,81732010,50,-,CGGTTGCCATCCTTGAGCTTCAGCCGGCTCTTCCTGAACTTGCCCTTGCG,"Exon (Map3k9-201/Map3k9, exon 6 of 11)",12,81721010,81781175,60166,2,Map3k9-201,49117,Map3k9-201;Map3k9-202;Map3k9-203,Map3k9;Map3k9;Map3k9,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,338372,ENSMUSG00000042724,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5575,cg20386603,0.0000885,0.0000234,3.779945365,0.00018813,gain,ns,-0.0000551,0.0000398,-1.384455656,0.167214698,neg,ns,0.029936753,0.011651205,2.569412547,0.010654478,pos,ns,1.972467826,-0.000987747,0.000400684,-2.465151824,0.014237177,neg,ns,0.39045125,Pbx3,Pbx3_Intron,2,34279868,34279917,34279868,34279869,50,-,CGGTTTCCAAAACTGCTCCAAGCATCATTCCTTTGCCAAGGCAGTAAACA,"Intron (Pbx3-202/Pbx3, intron 2 of 7)",2,34171457,34372038,200582,2,Pbx3-202,92121,Pbx3-202;Pbx3-201;Pbx3-210;Pbx3-206;Pbx3-207;Pbx3-209;Pbx3-204;Pbx3-205;Pbx3-203,Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,82,18516,ENSMUSG00000038718,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5145,cg04538134,0.00000632,0.00000204,3.104973829,0.002078684,gain,ns,0.00000479,0.00000346,1.384110541,0.167320232,pos,ns,-0.000752181,0.001013652,-0.742051005,0.458618276,neg,ns,0.338548642,0.000079,0.0000349,2.265641717,0.02416287,pos,ns,0.048249483,Fli1,Fli1_fiveUTR,9,32541202,32541251,32541202,32541203,50,+,CGTCCATTTGGCCAAGTCTGCAGCCGAGCCCCCCAATATTCCACACATTG,Promoter (<=1kb),9,32422204,32541595,119392,2,Fli1-201,344,Fli1-201;Fli1-202,Fli1;Fli1,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,15,14247,ENSMUSG00000016087,mapped to different genes,9,32540473,32541408,936,*,936,84,0.681623932,0.774834437,0.08974359,1.46E-59,CpGisland,TRUE,U1,Pr-A
5910,cg16777413,0.0000573,0.00000999,5.731955721,2.35E-08,gain,yes,-0.0000235,0.000017,-1.384093391,0.167325477,neg,ns,-0.002733903,0.004971655,-0.549897992,0.582785301,neg,ns,0.234491411,0.000415811,0.000170975,2.432000755,0.015581619,pos,ns,0.632918306,Lrrtm2,Lrrtm2_fiveUTR,18,35215007,35215056,35215007,35215008,50,+,CGGCACAAGAATGGATTTGCTTATGTGCTGCGACCACACAGAACTGTATA,Promoter (<=1kb),18,35209003,35215024,6022,2,Lrrtm2-201,0,Ctnna1-201;Ctnna1-204;Ctnna1-210;Ctnna1-203;Ctnna1-202;Lrrtm2-201;Lrrtm2-202;Lrrtm2-203,Ctnna1;Ctnna1;Ctnna1;Ctnna1;Ctnna1;Lrrtm2;Lrrtm2;Lrrtm2,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,3,107065,ENSMUSG00000071862,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8199,cg19654610,-0.0000115,0.0000053,-2.1710527,0.030685603,loss,ns,0.0000125,0.000009,1.383989401,0.167357287,pos,ns,0.003483579,0.002637813,1.320631391,0.187598418,pos,ns,0.726770828,-0.00017966,0.0000907,-1.980503118,0.048530769,neg,ns,0.592366737,Ebf1,Ebf1_Intron,11,44845548,44845597,44845596,44845597,50,+,AGGCACTGAGTGACTTATTAAAAGTGACGTGTGAAATATAACAGGGCCCG,"Intron (Ebf1-203/Ebf1, intron 6 of 15)",11,44617317,45004995,387679,1,Ebf1-203,228231,Ebf1-203;Ebf1-202;Ebf1-201,Ebf1;Ebf1;Ebf1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,80,13591,ENSMUSG00000057098,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24642,cg19790634,-0.0000423,0.00000643,-6.578370993,2.02E-10,loss,yes,-0.0000151,0.0000109,-1.383955607,0.167367626,neg,ns,0.000743717,0.003202724,0.23221383,0.81652516,pos,ns,0.088030429,-0.000146639,0.000110141,-1.331367493,0.184046327,neg,ns,0.917575649,Pard3,Pard3_Exon,8,127410736,127410785,127410736,127410737,50,+,CGAGACTAAACTCAATACAGTGGATGACCAGAAAGCAGGTAAGAATGGAC,"Exon (Pard3-219/Pard3, exon 18 of 25)",8,127063893,127611970,548078,1,Pard3-219,346843,Pard3-219;Pard3-202;Pard3-209;Pard3-211;Pard3-222;Pard3-201;Pard3-224;Pard3-210;Pard3-216;Pard3-223;Pard3-221;Pard3-213;Pard3-206;Pard3-214;Pard3-220;Pard3-215;Pard3-227,Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,8,93742,ENSMUSG00000025812,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14807,cg17313306,-0.00000225,0.00000106,-2.121522859,0.034670989,loss,ns,-0.0000025,0.0000018,-1.383736673,0.167434614,neg,ns,0.001173322,0.000528493,2.220128426,0.027133049,pos,ns,1.566501406,-0.000034,0.0000182,-1.868300396,0.062663361,neg,ns,0.966394822,Myo18a,Myo18a_Intron,11,77856285,77856334,77856333,77856334,50,-,CGATGCATACAGCACCTCCTTTCTAAAGGCAATCAATATGGTTATGAACG,"Intron (Myo18a-208/Myo18a, intron 40 of 41)",11,77763246,77865980,102735,1,Myo18a-208,93039,Myo18a-208;Myo18a-209;Myo18a-207;Myo18a-201;Myo18a-203;Myo18a-222;Myo18a-223;Myo18a-211;Myo18a-205;Myo18a-210;Myo18a-224;Myo18a-202;Myo18a-220;Myo18a-221;Myo18a-214;Myo18a-212;Myo18a-215;Myo18a-216,Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a,0;0;0;0;0;0;0;0;0;0;0;0;0;0;6834;5629;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,18,360013,ENSMUSG00000000631,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6477,cg26039576,0.00000225,0.00000157,1.43657111,0.151848319,gain,ns,-0.00000368,0.00000266,-1.38365708,0.167458973,neg,ns,-0.000273603,0.000779723,-0.350897289,0.725903745,neg,ns,0.139120963,0.000019,0.0000268,0.708765889,0.479002416,pos,ns,0.951002327,Inpp4a,Inpp4a_Exon,1,37403440,37403489,37403488,37403489,50,+,TTTTCACAGCATTGGAACACGGGAGGTAGTCACCCAGAAGAACTTGAGCG,"Exon (Inpp4a-206/Inpp4a, exon 25 of 25)",1,37299891,37410736,110846,1,Inpp4a-201,103549,Inpp4a-201;Inpp4a-209;Inpp4a-205;Inpp4a-207;Inpp4a-206;Inpp4a-213;Inpp4a-208;Inpp4a-202;Inpp4a-203;Inpp4a-211,Inpp4a;Inpp4a;Inpp4a;Inpp4a;Inpp4a;Inpp4a;Inpp4a;Inpp4a;Inpp4a;Inpp4a,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,9,269180,ENSMUSG00000026113,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1095,cg27096599,0.000205813,0.0000223,9.22423067,4.55E-18,gain,yes,-0.0000524,0.0000379,-1.383579275,0.167482787,neg,ns,0.011895026,0.011105008,1.071140687,0.284939394,pos,ns,0.545247503,-0.000591582,0.0003819,-1.549047415,0.12239058,neg,ns,0.096446773,Ptprg,Ptprg_fiveUTR,14,11554237,11554286,11554237,11554238,50,+,CGTTTTCGGACATGCGGAGGTTACTGGAACCGTGTTGGTGGATTTTGTTC,Promoter (<=1kb),14,11553532,12242041,688510,1,Ptprg-201,705,Ptprg-201;Ptprg-204;Ptprg-205,Ptprg;Ptprg;Ptprg,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,8,23,19270,ENSMUSG00000021745,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16010,cg08975006,-0.00000345,0.00000122,-2.840247803,0.004806017,loss,ns,0.00000286,0.00000207,1.383492725,0.16750928,pos,ns,0.001094908,0.000605375,1.808644564,0.071475038,pos,ns,1.145845605,-0.000029,0.0000208,-1.392273683,0.164837451,neg,ns,0.030900078,Elmsan1,Elmsan1_fiveUTR,12,84193807,84193856,84193807,84193808,50,-,CGTGTCACCCCCAGTCCTGCGATGCAGTGTCAGGATTGCACGGCTCTGAC,5' UTR,12,84149176,84218881,69706,2,Elmsan1-201,25025,Elmsan1-201;Elmsan1-202;Elmsan1-205,Elmsan1;Elmsan1;Elmsan1,0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,4,238317,ENSMUSG00000042507,conserved gene and region,12,84192979,84193862,884,*,884,106,0.714932127,0.950046132,0.119909502,1.38E-89,CpGisland,TRUE,U1,Pr-A
22114,cg07500659,0.000000754,0.00000292,0.258704218,0.796035152,gain,ns,0.00000685,0.00000495,1.38347003,0.167516228,pos,ns,0.004328365,0.001451024,2.982971828,0.003081279,pos,ns,2.511268979,-0.000145916,0.0000499,-2.92413798,0.003708666,neg,ns,0.942214798,Eif4g2,Eif4g2_Exon,7,111077255,111077304,111077255,111077256,50,+,CGTCTTTGGTCCATTGTCAAGAAAAGCCTTGCGAGGAACCCAATGGTGTT,"Exon (Eif4g2-213/Eif4g2, exon 11 of 22)",7,111067750,111083030,15281,2,Eif4g2-213,5726,Eif4g2-213;Eif4g2-206;Eif4g2-207;Eif4g2-208;Eif4g2-214;Eif4g2-202;Eif4g2-204;Eif4g2-211;Eif4g2-210;Eif4g2-209;Eif4g2-203;Eif4g2-201;Eif4g2-212;Eif4g2-205,Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2,0;0;0;0;-3006;-2556;-1870;-1046;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,20,22,13690,ENSMUSG00000005610,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13380,cg12895788,0.000210986,0.0000217,9.744365712,9.55E-20,gain,yes,-0.0000509,0.0000368,-1.383445483,0.167523743,neg,ns,0.007900209,0.010776487,0.733096874,0.464053332,pos,ns,0.333432105,0.001238728,0.000370603,3.34247007,0.000932072,pos,ns,0.625490628,Nr2f2,Nr2f2_Exon,7,70354664,70354713,70354712,70354713,50,+,ATTGCCATATACGGCCAGTTAAAACTGCTGCCGGACAGTAACATATCCCG,"Exon (Nr2f2-201/Nr2f2, exon 3 of 3)",7,70351944,70360593,8650,2,Nr2f2-201,5880,Nr2f2-201;Nr2f2-203;Nr2f2-202;Nr2f2-205;Nr2f2-204;Nr2f2-206,Nr2f2;Nr2f2;Nr2f2;Nr2f2;Nr2f2;Nr2f2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,24,69,11819,ENSMUSG00000030551,conserved gene and region,7,70354695,70354858,164,*,164,11,0.536585366,0.993939394,0.067073171,0.000000682,CpGisland,TRUE,NA,NRS
12246,cg21836538,-0.000002,0.00000144,-1.39091819,0.165247777,loss,ns,0.00000338,0.00000244,1.383243133,0.1675857,pos,ns,0.002715272,0.000715153,3.796773494,0.000176343,pos,ns,3.753642099,-0.0000703,0.0000246,-2.858855276,0.004539834,neg,ns,0.04546397,Ptch1,Ptch1_fiveUTR,13,63563744,63563793,63563792,63563793,50,+,ACCCAGTTTAAATAAGAGTCTCTGAAACTTCGCTCTCAGCCACAGCGGCG,5' UTR,13,63508328,63565735,57408,2,Ptch1-201,1942,Ptch1-201;Ptch1-204;Ptch1-206;Ptch1-202;Ptch1-207;Ptch1-203;Ptch1-205,Ptch1;Ptch1;Ptch1;Ptch1;Ptch1;Ptch1;Ptch1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,9,36,19206,ENSMUSG00000021466,conserved gene and region,13,63563774,63564066,293,*,293,23,0.686006826,0.669215492,0.078498294,2.20E-15,CpGisland,TRUE,U1,Pr-A
778,cg17304178,0.00000227,0.00000231,0.985755375,0.325021908,gain,ns,-0.00000542,0.00000392,-1.383217361,0.167593593,neg,ns,-0.00189004,0.001147705,-1.646799815,0.100612499,neg,ns,0.997348063,0.0000443,0.0000395,1.121798726,0.262816194,pos,ns,0.961161053,Usp7,Usp7_Exon,16,8712099,8712148,8712147,8712148,50,-,CGCACAAAACACGGAGGGCTAAGGACCGACTCACTCAGTCTGCTGAAGCG,"Exon (Usp7-207/Usp7, exon 4 of 32)",16,8689595,8792308,102714,2,Usp7-207,80160,Usp7-207;Usp7-206;Usp7-208;Usp7-210,Usp7;Usp7;Usp7;Usp7,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,10,252870,ENSMUSG00000022710,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27052,cg11445774,0.00004,0.0000147,2.730744658,0.006680812,gain,ns,-0.0000344,0.0000249,-1.383192514,0.167601202,neg,ns,-0.013053517,0.007293816,-1.789669077,0.074483108,neg,ns,1.127942211,0.00061791,0.000250834,2.463426086,0.014304541,pos,ns,0.793655102,Rasal2,Rasal2_fiveUTR,1,157244343,157244392,157244343,157244344,50,+,CGACAATAATGGAATCTGTAACTGACTGCCAACAGCAACATTAAGGATAT,5' UTR,1,157135182,157412595,277414,2,Rasal2-201,168203,Rasal2-201;Rasal2-204;Rasal2-203;Rasal2-205,Rasal2;Rasal2;Rasal2;Rasal2,0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,10,226525,ENSMUSG00000070565,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9610,cg04102296,-0.0000293,0.00000733,-4.001248166,0.0000789,loss,ns,0.0000172,0.0000124,1.383062099,0.167641145,pos,ns,-0.001976636,0.003646273,-0.542097727,0.588140631,neg,ns,0.230518817,-0.000150685,0.000125395,-1.201681961,0.230403985,neg,ns,0.854971962,Ncam1,Ncam1_Exon,9,49507577,49507626,49507625,49507626,50,-,TAGTGTCAGAGTTAGTGGTGACGGTGGTGACAGAAGGCAGCATGTCCTCG,"Exon (Ncam1-205/Ncam1, exon 19 of 20)",9,49502136,49798925,296790,2,Ncam1-204,291299,Ncam1-204;Ncam1-205;Ncam1-202,Ncam1;Ncam1;Ncam1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,16,17967,ENSMUSG00000039542,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15734,cg06479220,0.0000053,0.00000648,0.818913792,0.413464687,gain,ns,0.0000152,0.000011,1.382879664,0.167697034,pos,ns,0.003474618,0.003223878,1.07777599,0.281971686,pos,ns,0.549794499,-0.0000392,0.000110869,-0.353800183,0.723729139,neg,ns,0.745147887,Loxl3,Loxl3_Exon,6,83035660,83035709,83035708,83035709,50,+,AGATACAGCGAGCTGGTGAATGGGGCACCATCTGCGATGATGACTTCACG,"Exon (Loxl3-203/Loxl3, exon 2 of 3)",6,83034173,83037555,3383,1,Loxl3-203,1487,Dok1-201;Dok1-202;Dok1-203;Loxl3-203;Loxl3-201;Loxl3-202;Loxl3-205,Dok1;Dok1;Dok1;Loxl3;Loxl3;Loxl3;Loxl3,-2189;-2192;-3099;0;0;0;-2691,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,16950,ENSMUSG00000000693,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22194,cg24142628,-0.0000117,0.0000481,-0.242083802,0.808875298,loss,ns,-0.000113115,0.0000818,-1.382870099,0.167699964,neg,ns,-0.005071993,0.023963832,-0.211652018,0.832517603,neg,ns,0.079606575,-0.001237359,0.000824114,-1.501441517,0.134259264,neg,ns,0.344030698,Gm26897,Gm26897_Intergenic_upstream,5,111700039,111700088,111700039,111700040,50,-,CGCGGGTTTCTCGAGGCCTGTTTGTTATTAAGATGTAAATTAAATCATCA,Distal Intergenic,5,111733924,111734574,651,1,Gm26897-201,-33885,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,23,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1905,cg00038306,-0.00000229,0.00000129,-1.767667692,0.078100164,loss,ns,0.00000304,0.0000022,1.382827916,0.167712889,pos,ns,0.001242634,0.000644356,1.928488688,0.054707314,pos,ns,1.261954609,-0.0000494,0.0000222,-2.227760966,0.02661388,neg,ns,0.973294855,Ythdf3,Ythdf3_Exon,3,16189496,16189545,16189496,16189497,50,+,CGATTCATCAAAAAGATGCTGTAAATGATGATGATTTTGAGCCATACTTA,"Exon (Ythdf3-201/Ythdf3, exon 3 of 5)",3,16183212,16217037,33826,1,Ythdf3-201,6284,Ythdf3-201;Ythdf3-204;Ythdf3-203;Ythdf3-202,Ythdf3;Ythdf3;Ythdf3;Ythdf3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,8,229096,ENSMUSG00000047213,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6344,cg23938154,-0.0000148,0.00000289,-5.138045102,0.000000492,loss,yes,0.00000679,0.00000491,1.382787252,0.167725349,pos,ns,0.000680594,0.001437668,0.473401771,0.636259756,pos,ns,0.196365545,-0.0000521,0.0000494,-1.054499531,0.292475438,neg,ns,0.926234998,Tshz3,Tshz3_Intergenic_downstream,7,36945028,36945077,36945028,36945029,50,-,CGTCATTTGTATTCTGTTATGCAAAATAAGCTCCTTGATAAGATGTGTCT,Distal Intergenic,7,36698217,36702113,3897,1,Tshz3-202,246860,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,21,58,243931,ENSMUSG00000021217,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18878,cg11173437,0.00000283,0.00000301,0.94038854,0.347750477,gain,ns,-0.00000707,0.00000512,-1.38265308,0.167766466,neg,ns,0.005739413,0.001498845,3.829223753,0.000155556,pos,ns,3.808114132,-0.0000743,0.0000515,-1.44088057,0.150627695,neg,ns,0.92921943,Nfia,Nfia_Intron,4,97806400,97806449,97806400,97806401,50,+,CGTTACTGCTAGAGTGCTCAATTCTTGTTTTCAATAAGCCAGTTGTAAAA,"Intron (Nfia-208/Nfia, intron 2 of 3)",4,97772734,98000466,227733,1,Nfia-208,33666,Nfia-208;Nfia-202;Nfia-203;Nfia-205;Nfia-201;Nfia-204,Nfia;Nfia;Nfia;Nfia;Nfia;Nfia,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,44,18027,ENSMUSG00000028565,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
716,cg06263643,-0.000201406,0.0000244,-8.270925808,3.97E-15,loss,yes,0.0000572,0.0000414,1.382522915,0.167806363,pos,ns,0.020288971,0.012119802,1.674034823,0.095132345,pos,ns,1.021671798,-0.001891054,0.000416799,-4.537089525,0.00000817,neg,ns,0.691975152,Nipbl,Nipbl_Exon,15,8291382,8291431,8291382,8291383,50,-,CGCTTAGCCTCAGTCCAGGAGCCACTGTAGGAGCCTGCCATCCACTGAAC,"Exon (Nipbl-201/Nipbl, exon 47 of 47)",15,8290617,8444463,153847,2,Nipbl-201,153032,Nipbl-201,Nipbl,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,19,36,71175,ENSMUSG00000022141,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8310,cg07182240,0.0000297,0.00000428,6.927157037,2.49E-11,gain,yes,-0.0000101,0.00000728,-1.382436199,0.167832946,neg,ns,-0.001355466,0.002131665,-0.635872197,0.525328874,neg,ns,0.279568728,0.000159903,0.0000733,2.181254204,0.029915742,pos,ns,0.901116674,Zeb2,Zeb2_Intron,2,45000131,45000180,45000131,45000132,50,+,CGCCATTGAGGGACCAGCGCTCATATGTTGCTGAGTTGCATAAACAAACA,"Intron (Zeb2-212/Zeb2, intron 7 of 10)",2,44983632,45117395,133764,2,Zeb2-212,117215,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-227;Zeb2-216;Zeb2-229;Zeb2-218;Zeb2-222,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12268,cg17445472,-0.0000546,0.00000958,-5.70116415,2.77E-08,loss,yes,0.0000225,0.0000163,1.382381246,0.167849794,pos,ns,-0.001506712,0.004765577,-0.316165688,0.752089522,neg,ns,0.123730462,-0.000114367,0.000163888,-0.697839257,0.485800804,neg,ns,0.814662532,Gm46499,Gm46499_Intron,15,63704916,63704965,63704964,63704965,50,+,TCTCCATCCTCCTGTTATATAATAGTCATGCCAAGATGAAGTGGCCAACG,"Intron (Gm41335-203/Gm41335-203, intron 2 of 8)",15,63760161,63760580,420,1,Gm46499-201,-55196,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,108168216,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2631,cg10866871,0.000000295,0.000000359,0.821995152,0.41171142,gain,ns,-0.000000842,0.000000609,-1.382234623,0.167894752,neg,ns,-0.000290516,0.000178498,-1.627554988,0.104635192,neg,ns,0.980322226,0.00000505,0.00000614,0.823066067,0.411103118,pos,ns,0.991013473,Camk2g,Camk2g_threeUTR,14,20736689,20736738,20736737,20736738,50,+,GAAGGGCGGGCGGGAGGGCTGCATGCAGGGGCGTGCATTGGCTGCTGCCG,3' UTR,14,20734875,20794051,59177,2,Camk2g-203,57313,Camk2g-203;Camk2g-201;Camk2g-202;Camk2g-205;Camk2g-217;Camk2g-210;Camk2g-209;Camk2g-204;Camk2g-212;Camk2g-211;Ndst2-202,Camk2g;Camk2g;Camk2g;Camk2g;Camk2g;Camk2g;Camk2g;Camk2g;Camk2g;Camk2g;Ndst2,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,15,12325,ENSMUSG00000021820,conserved gene and region,14,20736668,20736817,150,*,150,10,0.593333333,0.765306122,0.066666667,0.00000279,CpGisland,TRUE,U11,Tr-P
8493,cg17532473,0.0000163,0.00000214,7.607155961,3.38E-13,gain,yes,-0.00000503,0.00000364,-1.382065478,0.167946628,neg,ns,0.001683333,0.001066205,1.578806913,0.115400169,pos,ns,0.937793556,0.00000949,0.0000367,0.25869145,0.796044995,pos,ns,0.018593241,Lbx1,Lbx1_Intergenic_downstream,19,45229275,45229324,45229323,45229324,50,+,CTCGTCCCTTTCAGGGGGGACTCATGCATCAAACTTCAATTTTCCGGACG,Distal Intergenic,19,45232684,45235812,3129,2,Lbx1-201,6488,Lbx1-201,Lbx1,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,30,50,16814,ENSMUSG00000025216,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
5011,cg04504095,0.0000569,0.00000436,13.04166307,2.73E-31,gain,yes,-0.0000102,0.00000741,-1.381893013,0.167999534,neg,ns,-0.001742627,0.002171084,-0.802652924,0.422790293,neg,ns,0.373874993,0.0000547,0.0000747,0.733008705,0.464107028,pos,ns,0.096706918,Foxc1,Foxc1_Exon,13,31807215,31807264,31807215,31807216,50,+,CGCGCTACTCCGTGTCCAGCCCCAACTCCCTGGGAGTGGTGCCCTACCTC,Promoter (<=1kb),13,31806633,31812476,5844,1,Foxc1-201,582,Foxc1-201,Foxc1,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,7,17300,ENSMUSG00000050295,conserved gene and region,13,31806890,31807492,603,*,603,82,0.742951907,0.985942454,0.135986733,1.21E-74,CpGisland,TRUE,U3,Pr-B
514,cg15412281,0.00000196,0.00000789,0.247932832,0.804350522,gain,ns,0.0000185,0.0000134,1.38150586,0.168118345,pos,ns,0.000110867,0.003924914,0.028247103,0.977483245,pos,ns,0.009890678,0.000076,0.000134977,0.563394506,0.573573561,pos,ns,0.881485895,St18,St18_Intron,1,6729777,6729826,6729825,6729826,50,-,AATAAGCACCACTTCCATTACATATATTTTAGGTTGTTGTTGCCGTGGCG,"Intron (St18-208/St18, intron 2 of 23)",1,6487231,6860934,373704,1,St18-208,242546,St18-208;St18-204;St18-201;St18-206;St18-203;St18-210;St18-212,St18;St18;St18;St18;St18;St18;St18,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,20,240690,ENSMUSG00000033740,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25893,cg22901671,-0.00000573,0.00000474,-1.2094019,0.227429997,loss,ns,0.0000111,0.00000805,1.381321169,0.168175046,pos,ns,-0.0000281,0.002357686,-0.011917922,0.990498765,neg,ns,0.004146061,-0.0000057,0.0000811,-0.070242432,0.944045993,neg,ns,0.910666638,Frmpd3,Frmpd3_threeUTR,X,140434550,140434599,140434550,140434551,50,+,CGTGATATGTTAATCCTGAGTATATGCTTTTGGCTGTGTATTGACCCTGT,3' UTR,20,140342263,140435467,93205,1,Frmpd3-203,92287,Frmpd3-203,Frmpd3,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,10,245643,ENSMUSG00000042425,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10125,cg06957138,0.00013349,0.0000171,7.815827533,8.57E-14,gain,yes,-0.0000401,0.000029,-1.381124019,0.168235588,neg,ns,0.027086099,0.008500645,3.186358071,0.001587572,pos,ns,2.799266613,-0.000781077,0.000292336,-2.671843804,0.007942292,neg,ns,0.163897217,Gm28308,Gm28308_Intron,6,52197478,52197527,52197478,52197479,50,-,CGATTCCTAGGGTGTGCAGATTTATCTTCTCTGCATTTACTTAACCCGGC,"Intron (Hoxaas3-202/Hoxaas3-202, intron 1 of 2)",6,52163359,52213339,49981,2,Gm28308-201,15812,Gm28308-201;Hoxa3-201;Hoxa3-203;Hoxa5-201,Gm28308;Hoxa3;Hoxa3;Hoxa5,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,46,103,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
18465,cg08498064,-0.00000135,0.00000153,-0.879711905,0.379696825,loss,ns,0.0000036,0.00000261,1.380977213,0.16828068,pos,ns,0.001416805,0.000763716,1.855145291,0.064524672,pos,ns,1.190274194,-0.000047,0.0000263,-1.79119622,0.074237234,neg,ns,0.972840388,Cnot1,Cnot1_fiveUTR,8,95788706,95788755,95788754,95788755,50,-,GCCAGCGAGAGCGAGTCAAGATTCATTGCTGGTTGGGGCGGAAGCAGGCG,5' UTR,8,95719451,95807462,88012,2,Cnot1-202,18707,Cnot1-202;Cnot1-201;Cnot1-203;Cnot1-216;Cnot1-217;Cnot1-207;Cnot1-209,Cnot1;Cnot1;Cnot1;Cnot1;Cnot1;Cnot1;Cnot1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,24,234594,ENSMUSG00000036550,conserved gene and region,8,95788711,95788768,58,*,58,7,0.672413793,1.16,0.120689655,0.00000369,CpGisland,TRUE,U10,Tr-S
25442,cg25047844,-0.00000329,0.00000147,-2.237101473,0.025990285,loss,ns,0.00000345,0.0000025,1.380850484,0.168319614,pos,ns,0.001840077,0.000731113,2.516815523,0.012346466,pos,ns,1.908457324,-0.0000696,0.0000251,-2.767292241,0.00599208,neg,ns,0.962434959,Cux1,Cux1_Intergenic_upstream,5,136606584,136606633,136606584,136606585,50,+,CGCCCATTCTCAGTAATAAGCAAAGCTGCAGAAAGCCTTTGGCCCGAGAT,Distal Intergenic,5,136482875,136567490,84616,2,Cux1-214,-39094,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,21,13047,ENSMUSG00000029705,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7763,cg27630192,0.00000262,0.00000717,0.366009004,0.714608003,gain,ns,-0.0000168,0.0000122,-1.380694332,0.168367595,neg,ns,-0.009532964,0.003568977,-2.671063626,0.007960351,neg,ns,2.099067784,0.000150216,0.000122737,1.223884551,0.22192516,pos,ns,0.541968222,Dnajb9,Dnajb9_Exon,12,44207000,44207049,44207000,44207001,50,+,CGTTGAGTGACAGTCCTGCAGTGCTTGCTAGATCCATGAAATCTATTTTC,"Exon (Dnajb9-201/Dnajb9, exon 3 of 3)",12,44205559,44210326,4768,2,Dnajb9-201,3277,Dnajb9-201;Dnajb9-202;Gm7370-201,Dnajb9;Dnajb9;Gm7370,0;3019;-3829,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,27362,ENSMUSG00000014905,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14177,cg20829343,0.0000444,0.00000635,6.9869771,1.72E-11,gain,yes,-0.0000149,0.0000108,-1.3806827,0.16837117,neg,ns,0.004379808,0.00316274,1.384814583,0.167104994,pos,ns,0.77701057,-0.000134988,0.000108766,-1.241086522,0.215512123,neg,ns,0.046209495,Hoxd3,Hoxd3_fiveUTR,2,74732878,74732927,74732878,74732879,50,-,CGAAATAATTAATTCAGCACGTCCCTTAAGAAACACGGAGTCGTCATTAA,Promoter (<=1kb),2,74732913,74744214,11302,1,Hoxd3-205,0,Gm28230-201;Hoxd3-203;Hoxd3-205;Hoxd3-202;Hoxd4-203;Hoxd4-201;Hoxd4-202,Gm28230;Hoxd3;Hoxd3;Hoxd3;Hoxd4;Hoxd4;Hoxd4,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,8,24,15434,ENSMUSG00000079277,conserved gene but different region,2,74732626,74733055,430,*,430,35,0.590697674,0.938923202,0.081395349,1.14E-23,CpGisland,TRUE,U13,Hc-P
12529,cg11565438,-0.0000441,0.00000525,-8.384999003,1.81E-15,loss,yes,-0.0000123,0.00000892,-1.380678881,0.168372344,neg,ns,-0.004796902,0.002614719,-1.834576608,0.067526653,neg,ns,1.170524778,-0.0000151,0.0000899,-0.168032989,0.866666897,neg,ns,0.90234384,Hmbox1,Hmbox1_Exon,14,64887562,64887611,64887610,64887611,50,-,CTTCAGCTCTTACCTGTTACCTGTGCAACAACTGCTTGGGAAATCCTCCG,"Exon (Hmbox1-201/Hmbox1, exon 4 of 11)",14,64811600,64949850,138251,2,Hmbox1-201,62239,Hmbox1-201;Hmbox1-202;Hmbox1-205;Hmbox1-209;Hmbox1-210;Hmbox1-203;Hmbox1-207;Hmbox1-204;Hmbox1-208,Hmbox1;Hmbox1;Hmbox1;Hmbox1;Hmbox1;Hmbox1;Hmbox1;Hmbox1;Hmbox1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,8,219150,ENSMUSG00000021972,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27893,cg25340680,0.0000907,0.0000129,7.019791448,1.41E-11,gain,yes,-0.0000303,0.0000219,-1.38057737,0.168403541,neg,ns,0.042023653,0.006427532,6.538069706,2.56E-10,pos,ns,9.591009197,-0.000101484,0.000221042,-0.459117947,0.646471227,neg,ns,0.7991257,Prox1,Prox1_Intron,1,190148660,190148709,190148708,190148709,50,+,ACTGTCCAAATTTCCAGACACTGAGATAAGGACTACAGGCCCCCGTGACG,"Intron (Prox1-202/Prox1, intron 3 of 4)",1,190118035,190170714,52680,2,Prox1-202,22005,Prox1-202;Prox1-201;Prox1-203,Prox1;Prox1;Prox1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,59,19130,ENSMUSG00000010175,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14526,cg12836508,-0.00000454,0.00000164,-2.766381373,0.006008433,loss,ns,0.00000385,0.00000279,1.380476564,0.168434527,pos,ns,0.00063927,0.00081601,0.783409057,0.433985045,pos,ns,0.362525236,-0.000000524,0.0000281,-0.018674988,0.985112395,neg,ns,0.053504736,Clock,Clock_Promoter,5,76303992,76304041,76304040,76304041,50,+,CAAACGTGCCCGAGTGGTGACAGGAATAAAGTGGGTCACAAGGCCTAGCG,Promoter (<=1kb),5,76209868,76304792,94925,2,Clock-205,751,Clock-205;Clock-201;Clock-206;Clock-202;Clock-203,Clock;Clock;Clock;Clock;Clock,0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,1,3,12753,ENSMUSG00000029238,conserved gene and region,5,76303668,76305319,1652,*,1652,210,0.745157385,0.930494536,0.127118644,6.08E-183,CpGisland,TRUE,U1,Pr-A
12977,cg03663215,0.000239816,0.0000223,10.75075618,4.02E-23,gain,yes,-0.0000523,0.0000379,-1.380456489,0.168440698,neg,ns,0.027681521,0.011102374,2.493297506,0.013177527,pos,ns,1.88016607,-0.000957033,0.00038181,-2.506569612,0.012702616,neg,ns,0.115324099,Adcy2,Adcy2_Exon,13,68999153,68999202,68999201,68999202,50,+,TGCTGCTGGCTCATGCAGTAGTAGGACTCGTAGAGCCAGTCCCGGGACCG,Promoter (<=1kb),13,68620043,68999541,379499,2,Adcy2-201,339,Adcy2-201,Adcy2,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,210044,ENSMUSG00000021536,conserved gene and region,13,68998968,68999733,766,*,766,106,0.785900783,0.89842436,0.138381201,2.77E-97,CpGisland,TRUE,NA,NRS
9119,cg01956458,-0.00000116,0.00000122,-0.956450146,0.339590138,loss,ns,-0.00000286,0.00000207,-1.380443858,0.168444581,neg,ns,-0.002160416,0.000606085,-3.564539832,0.000421936,neg,ns,3.374753092,0.0000312,0.0000208,1.495385971,0.135831021,pos,ns,0.980730699,Ubr2,Ubr2_Exon,17,46980497,46980546,46980545,46980546,50,+,GTGCGGTGAAGAACTGGACAGATAGAGCAGTCACCGACACTGCTCGCTCG,"Exon (Ubr2-202/Ubr2, exon 11 of 47)",17,46928295,47010520,82226,2,Ubr2-202,29974,Ubr2-202;Ubr2-205;Ubr2-201;Ubr2-206,Ubr2;Ubr2;Ubr2;Ubr2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,4,224826,ENSMUSG00000023977,conserved gene and region,17,46980451,46980762,312,*,312,21,0.567307692,0.838709677,0.067307692,9.66E-13,CpGisland,TRUE,U10,Tr-S
25904,cg12162688,0.000000519,0.00000291,0.178106883,0.858755367,gain,ns,0.00000683,0.00000495,1.380379775,0.168464282,pos,ns,0.004332725,0.001450356,2.987352422,0.003038697,pos,ns,2.517312533,-0.000109032,0.0000499,-2.185992765,0.029563857,neg,ns,0.920291181,Aebp2,Aebp2_fiveUTR,6,140633687,140633736,140633735,140633736,50,-,AGCATAAGCAGTACTATAATGGATGTAGACAGCACAATTTCCAGTGGGCG,5' UTR,6,140622663,140655481,32819,1,Aebp2-201,11024,Aebp2-201;Aebp2-202;Aebp2-203;Aebp2-205;Aebp2-206;Aebp2-209;Aebp2-208,Aebp2;Aebp2;Aebp2;Aebp2;Aebp2;Aebp2;Aebp2,0;0;0;0;0;-3002;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,3,11569,ENSMUSG00000030232,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12006,cg11242021,0.00000652,0.00000233,2.802185675,0.00539518,gain,ns,-0.00000545,0.00000395,-1.380225013,0.168511867,neg,ns,-0.000656227,0.001157259,-0.567052918,0.571088594,neg,ns,0.243296514,-0.00000912,0.0000398,-0.229083906,0.818954761,neg,ns,0.918902054,Ncor1,Ncor1_Exon,11,62333715,62333764,62333715,62333716,50,+,CGAGGCAATTTGCCGGGTGATGATCACGTCTATGAAGTTAGCTGCAGTAA,"Exon (Ncor1-204/Ncor1, exon 36 of 45)",11,62316426,62438515,122090,2,Ncor1-204,104751,Gm12276-201;Ncor1-204;Ncor1-201;Ncor1-213;Ncor1-214;Ncor1-202;Ncor1-205;Ncor1-209;Ncor1-223;Ncor1-219,Gm12276;Ncor1;Ncor1;Ncor1;Ncor1;Ncor1;Ncor1;Ncor1;Ncor1;Ncor1,2294;0;0;0;0;0;0;0;0;-2772,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,10,20185,ENSMUSG00000018501,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1574,cg21634324,0.0000307,0.0000049,6.266862158,1.23E-09,gain,yes,-0.0000115,0.00000833,-1.380074637,0.168558114,neg,ns,0.005728739,0.002440567,2.347298583,0.019538891,pos,ns,1.709100086,-0.000270862,0.0000839,-3.227208131,0.001383785,neg,ns,0.103819532,Runx1t1,Runx1t1_fiveUTR,4,13784927,13784976,13784975,13784976,50,-,CAAGTGCAATCCGGAGTGTCAGCTCTCCATCTGTCTCTGCCTGGCAGGCG,5' UTR,4,13743436,13893649,150214,1,Runx1t1-201,41491,Runx1t1-201;Runx1t1-206;Runx1t1-204;Runx1t1-203;Runx1t1-202,Runx1t1;Runx1t1;Runx1t1;Runx1t1;Runx1t1,0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,24,12395,ENSMUSG00000006586,conserved gene and region,4,13784938,13785132,195,*,195,13,0.646153846,0.682736332,0.066666667,4.94E-08,CpGisland,TRUE,U1,Pr-A
6478,cg20136571,0.0000051,0.00000121,4.230281723,0.0000308,gain,ns,-0.00000283,0.00000205,-1.380069284,0.168559761,neg,ns,-0.000101109,0.000600491,-0.168376787,0.866396669,neg,ns,0.062283226,0.0000358,0.0000207,1.733388634,0.084020942,pos,ns,0.972260222,Inpp4a,Inpp4a_Exon,1,37403456,37403505,37403504,37403505,50,+,ACACGGGAGGTAGTCACCCAGAAGAACTTGAGCGGCCTGGTGCCCATCCG,"Exon (Inpp4a-206/Inpp4a, exon 25 of 25)",1,37299891,37410736,110846,1,Inpp4a-201,103565,Inpp4a-201;Inpp4a-209;Inpp4a-205;Inpp4a-207;Inpp4a-206;Inpp4a-213;Inpp4a-208;Inpp4a-202;Inpp4a-203;Inpp4a-211,Inpp4a;Inpp4a;Inpp4a;Inpp4a;Inpp4a;Inpp4a;Inpp4a;Inpp4a;Inpp4a;Inpp4a,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,9,269180,ENSMUSG00000026113,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25964,cg21977797,-0.0000016,0.00000914,-0.175222899,0.861018884,loss,ns,-0.0000214,0.0000155,-1.379943732,0.16859838,neg,ns,0.028513059,0.004547514,6.270032883,1.21E-09,pos,ns,8.917397239,-0.000871976,0.000156389,-5.575699874,5.37E-08,neg,yes,0.589068518,Brsk2,Brsk2_threeUTR,7,142002025,142002074,142002073,142002074,50,+,GAGTAACTTCTTTGACGTAATTAAACAACTTTTTTCAGACGAGAAGAACG,3' UTR,7,141949751,142004246,54496,1,Brsk2-201,52274,Brsk2-203;Brsk2-201;Brsk2-205;Brsk2-215;Brsk2-204;Brsk2-202;Brsk2-216;Brsk2-206;Brsk2-211;Brsk2-210;Brsk2-214;Brsk2-213;Brsk2-208;Brsk2-207;Brsk2-209;Brsk2-212;Brsk2-217,Brsk2;Brsk2;Brsk2;Brsk2;Brsk2;Brsk2;Brsk2;Brsk2;Brsk2;Brsk2;Brsk2;Brsk2;Brsk2;Brsk2;Brsk2;Brsk2;Brsk2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,4,75770,ENSMUSG00000053046,conserved gene but different region,7,142002040,142002219,180,*,180,17,0.688888889,0.797913951,0.094444444,7.51E-13,CpGisland,TRUE,U11,Tr-P
24436,cg14374760,-0.00000134,0.00000094,-1.425658388,0.15497311,loss,ns,-0.0000022,0.0000016,-1.379893524,0.168613826,neg,ns,0.000533356,0.000468035,1.139564094,0.2553477,pos,ns,0.59286805,-0.00003,0.0000161,-1.864958808,0.063131883,neg,ns,0.972568947,Ntf3,Ntf3_Exon,6,126101852,126101901,126101900,126101901,50,-,CTGAGAGTTCCAGTGTTTATCATCAATACCCCTGCAACCGTTTTTGACCG,"Exon (Ntf3-203/Ntf3, exon 2 of 2)",6,126101412,126164960,63549,2,Ntf3-203,63059,Ntf3-203;Ntf3-202;Ntf3-201,Ntf3;Ntf3;Ntf3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,5,18205,ENSMUSG00000049107,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4811,cg01584181,-0.00000257,0.00000372,-0.690462977,0.490419711,loss,ns,0.00000873,0.00000633,1.379882224,0.168617303,pos,ns,0.000254129,0.001853457,0.13711091,0.891032135,pos,ns,0.050106633,-0.0000124,0.0000637,-0.194494722,0.845915925,neg,ns,0.920739456,Ctnnd2,Ctnnd2_Exon,15,30669523,30669572,30669571,30669572,50,+,AGAAGCCCCCTATGAGGAGTCTCAGCCAGAGCCAGGGGGACCCTCTGCCG,"Exon (Ctnnd2-201/Ctnnd2, exon 8 of 23)",15,30172593,31029341,856749,1,Ctnnd2-201,496930,Ctnnd2-201;Ctnnd2-203;Ctnnd2-211,Ctnnd2;Ctnnd2;Ctnnd2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,10,18163,ENSMUSG00000022240,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19765,cg08639169,-0.0000417,0.000018,-2.312653517,0.02139632,loss,ns,0.0000423,0.0000306,1.379860335,0.168624037,pos,ns,-0.008875099,0.008974146,-0.988963098,0.323452468,neg,ns,0.490189531,0.000340744,0.00030862,1.104087081,0.270411626,pos,ns,0.748559024,Scn8a,Scn8a_threeUTR,15,101045472,101045521,101045520,101045521,50,-,CCTACCTCACAGGGGTGTTGTGAGGCTTTAACTAAATGTTTTGTAAAGCG,3' UTR,15,100870683,101045929,175247,1,Scn8a-201,174789,Fignl2-201;Fignl2-202;Scn8a-201;Scn8a-204;Scn8a-213;Scn8a-203;Scn8a-205;Scn8a-208;Tmdd1-201,Fignl2;Fignl2;Scn8a;Scn8a;Scn8a;Scn8a;Scn8a;Scn8a;Tmdd1,0;0;0;0;0;0;0;0;1876,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,24,20273,ENSMUSG00000023033,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
19445,cg03554099,0.00000338,0.00000285,1.186355386,0.236390409,gain,ns,0.00000668,0.00000484,1.37971797,0.168667842,pos,ns,0.004424697,0.001418681,3.118880032,0.001985904,pos,ns,2.702041713,-0.000162089,0.0000488,-3.322299494,0.00099961,neg,ns,0.943551371,Foxp1,Foxp1_Intron,6,99321448,99321497,99321496,99321497,50,+,AATACCACTGCAATGTGTGTAAATTTAGACCACCATAATTAAAGCACCCG,"Intron (Foxp1-204/Foxp1, intron 1 of 18)",6,98925342,99435345,510004,2,Foxp1-204,113848,Foxp1-204;Foxp1-220;Foxp1-221;Foxp1-222;Foxp1-224;Foxp1-227;Foxp1-219;Gm20696-201,Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Gm20696,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,87,108655,ENSMUSG00000030067,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2597,cg20452275,0.00000821,0.0000033,2.485854717,0.013450698,gain,ns,-0.00000775,0.00000561,-1.379701453,0.168672924,neg,ns,-0.00129811,0.001644583,-0.789324381,0.430525721,neg,ns,0.366000898,-0.0000672,0.0000566,-1.188755977,0.235445529,neg,ns,0.056391107,Eif4g1,Eif4g1_Intron,16,20678139,20678188,20678187,20678188,50,-,CAAGCCCTGGGCGTGGTGCCCAGAATAGGGTGCCAGAGCTGGGGAAGCCG,"Intron (Eif4g1-220/Eif4g1, intron 3 of 5)",16,20668313,20679395,11083,1,Eif4g1-220,9826,Eif4g1-220;Eif4g1-208;Eif4g1-201;Eif4g1-206;Eif4g1-216;Eif4g1-202;Eif4g1-217;Eif4g1-207;Eif4g1-218;Eif4g1-225;Eif4g1-214;Eif4g1-203;Eif4g1-222;Eif4g1-221;Eif4g1-205;Eif4g1-212;Eif4g1-204;Eif4g1-215;Eif4g1-219;Eif4g1-210;Eif4g1-211;Eif4g1-213,Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;-218;-2851,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,10,208643,ENSMUSG00000045983,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19206,cg05645807,-0.0000348,0.00000688,-5.064593298,0.000000704,loss,yes,0.0000161,0.0000117,1.379648941,0.168689084,pos,ns,-0.007631152,0.003424313,-2.228520458,0.026562694,neg,ns,1.57572788,0.0000622,0.000117762,0.528489048,0.597538088,pos,ns,0.88974535,Zc3h14,Zc3h14_Exon,12,98779236,98779285,98779236,98779237,50,-,CGGGTACTTTCAGGACACCTTATGCAGACACGGTAGATGGTTTCTTTTTC,"Exon (Zc3h14-204/Zc3h14, exon 11 of 17)",12,98746964,98787753,40790,1,Zc3h14-203,32272,Zc3h14-203;Zc3h14-210;Zc3h14-202;Zc3h14-204;Zc3h14-208;Zc3h14-213;Zc3h14-206;Zc3h14-201;Zc3h14-209,Zc3h14;Zc3h14;Zc3h14;Zc3h14;Zc3h14;Zc3h14;Zc3h14;Zc3h14;Zc3h14,0;0;0;0;0;0;0;0;-4046,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,75553,ENSMUSG00000021012,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8026,cg16218522,0.0000215,0.0000104,2.075456187,0.038768576,gain,ns,0.0000243,0.0000176,1.379531183,0.168725327,pos,ns,-0.002838854,0.005159778,-0.5501892,0.582585813,neg,ns,0.234640095,0.000270387,0.000177444,1.523784595,0.128581993,pos,ns,0.292715412,Pax2,Pax2_Intergenic_upstream,19,44696733,44696782,44696733,44696734,50,-,CGGAGCGATTATGAATGGGTTAGTCACAGGTGGAGTTAAAGGCCTTCAGA,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-59312,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
23455,cg09753530,0.0000359,0.00000716,5.005693441,0.000000935,gain,yes,0.0000168,0.0000122,1.379519636,0.168728881,pos,ns,0.002365649,0.003565215,0.663536132,0.507480384,pos,ns,0.29458074,0.0000599,0.000122607,0.488564839,0.62549524,pos,ns,0.543830285,Gm9267,Gm9267_Intergenic_upstream,12,118500490,118500539,118500538,118500539,50,+,AACTGCTCCAATTTACTGCTCCCGACCTGCTGATAATGGACACTTTGCCG,Distal Intergenic,12,118602677,118603080,404,1,Gm9267-201,-102138,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,20,668611,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13350,cg19821183,0.0000448,0.0000102,4.379297526,0.0000163,gain,ns,0.000024,0.0000174,1.379510301,0.168731755,pos,ns,0.00751519,0.005086431,1.477497751,0.140557466,pos,ns,0.85214608,-0.000074,0.000174922,-0.422938329,0.672633493,neg,ns,0.321306338,Nr2f2,Nr2f2_Intron,7,70281679,70281728,70281679,70281680,50,-,CGCCACATGCTCACTCCGTTTTACTGTCAGGGCTGGTCGAGGCTGTGGCT,"Intron (Gm29683-202/Gm29683-202, intron 1 of 3)",7,70353074,70355237,2164,2,Nr2f2-203,73558,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,69,11819,ENSMUSG00000030551,mapped to different genes,7,70281536,70281717,182,*,182,17,0.642857143,0.909465021,0.093406593,9.09E-13,CpGisland,TRUE,U13,Hc-P
24427,cg25588975,0.00000776,0.00000406,1.912290887,0.056760365,gain,ns,-0.00000951,0.0000069,-1.379501044,0.168734604,neg,ns,-0.005670548,0.00202062,-2.806340994,0.005327815,neg,ns,2.27345084,0.0000336,0.0000695,0.483788449,0.628877576,pos,ns,0.906314825,D430042O09Rik,D430042O09Rik_Intron,7,125766746,125766795,125766794,125766795,50,+,TCAGCCTTGTAATACTTGGGTGGACAGCGGCCTAATCAACAGAGCCGTCG,"Intron (D430042O09Rik-203/D430042O09Rik, intron 4 of 26)",7,125707888,125874548,166661,1,D430042O09Rik-203,58858,D430042O09Rik-203;D430042O09Rik-201;D430042O09Rik-205,D430042O09Rik;D430042O09Rik;D430042O09Rik,0;0;58755,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,233865,ENSMUSG00000032743,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18161,cg02003409,-0.00000181,0.00000093,-1.945983098,0.052560194,loss,ns,-0.00000218,0.00000158,-1.379488381,0.168738502,neg,ns,-0.000276275,0.000462748,-0.597032196,0.550921676,neg,ns,0.25891014,-0.0000233,0.0000159,-1.461130889,0.144992357,neg,ns,0.031155836,Ttc17,Ttc17_Intergenic_downstream,2,94265361,94265410,94265361,94265362,50,+,CGCCCAGTTCCAGCAGTGTGTGCTATTGACCTGCATTGACGTCAGTGCGT,Distal Intergenic,2,94355049,94362817,7769,2,Ttc17-205,97407,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,5,74569,ENSMUSG00000027194,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6699,cg05201058,0.00000159,0.00000128,1.246941649,0.213360182,gain,ns,0.00000299,0.00000217,1.379484324,0.168739751,pos,ns,0.001748448,0.000634699,2.754766592,0.006220526,pos,ns,2.206172859,-0.0000503,0.0000218,-2.305925903,0.021774406,neg,ns,0.03649547,Gsk3b,Gsk3b_Exon,16,38090557,38090606,38090557,38090558,50,-,CGGAGAGCTGCAAGCCGGTGCAGCAGCCTTCAGCTTTTGGCAGCATGAAA,"Exon (Gsk3b-201/Gsk3b, exon 1 of 11)",16,38089001,38246084,157084,1,Gsk3b-201,1556,Gsk3b-201;Gsk3b-202,Gsk3b;Gsk3b,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,11,56637,ENSMUSG00000022812,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
23414,cg19106109,-0.00000308,0.000000913,-3.37488878,0.00083236,loss,ns,0.00000214,0.00000155,1.37934834,0.168781614,pos,ns,-0.000132937,0.000454609,-0.292420227,0.770160961,neg,ns,0.113418499,-0.0000244,0.0000156,-1.560618585,0.119634034,neg,ns,0.029753664,Sp4,Sp4_Promoter,12,118300992,118301041,118300992,118300993,50,+,CGTGGTTTGAAACCCGACCCATCGGCTCCAGAGCAACACCCAGAAGGAGG,Promoter (<=1kb),12,118234933,118301370,66438,2,Sp4-201,329,Sp4-201;Sp4-203;Sp4-202,Sp4;Sp4;Sp4,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,1,14,20688,ENSMUSG00000025323,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
24470,cg05779101,-0.000000771,0.00000272,-0.283703393,0.776827076,loss,ns,-0.00000636,0.00000461,-1.379241587,0.168814483,neg,ns,-0.000668324,0.001351811,-0.494391302,0.621380015,neg,ns,0.206642719,0.000000658,0.0000465,0.014155468,0.988715053,pos,ns,0.903708542,Ago1,Ago1_Exon,4,126460486,126460535,126460486,126460487,50,-,CGGCCCACAGGGGTGTACCTGGCAGGGACAGGCAGAGAACTGGTCCCTCG,"Exon (Ago1-207/Ago1, exon 5 of 19)",4,126435012,126468421,33410,2,Ago1-207,7886,Ago1-207;Ago1-201;Ago1-206;Ago1-202;Ago1-205;Ago1-203,Ago1;Ago1;Ago1;Ago1;Ago1;Ago1,0;0;0;0;0;-361,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,13,236511,ENSMUSG00000041530,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22144,cg07849904,-0.0000353,0.0000157,-2.252630985,0.024981577,loss,ns,0.0000367,0.0000266,1.379226641,0.168819085,pos,ns,0.002523961,0.007802684,0.323473492,0.746554784,pos,ns,0.126938317,-0.0000793,0.000268334,-0.295634936,0.767706814,neg,ns,0.170445237,Mn1,Mn1_Promoter,5,111417216,111417265,111417216,111417217,50,-,CGCTGATTGGTGCAAATGTAATGGCTGAAATTGATTGCTGAAATGCAAAA,Promoter (<=1kb),5,111417362,111418073,712,1,Mn1-202,-146,Mn1-202;Mn1-201,Mn1;Mn1,-97;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,5,12,433938,ENSMUSG00000070576,conserved gene and region,5,111416504,111417217,714,*,714,76,0.719887955,0.82562191,0.106442577,5.21E-60,CpGisland,TRUE,U3,Pr-B
1456,cg14136831,-0.00000819,0.00000696,-1.176266652,0.240390814,loss,ns,-0.0000163,0.0000118,-1.378647436,0.168997511,neg,ns,-0.004765025,0.00346492,-1.375219301,0.170056468,neg,ns,0.769406846,-0.000182773,0.000119158,-1.533863627,0.126083115,neg,ns,0.890338801,Cdh6,Cdh6_Exon,15,13041072,13041121,13041120,13041121,50,-,CACAGACCCGGACAGTCACTGTCCCAGTGCTGCTTTGAACTGGGTAGTCG,"Exon (Cdh6-201/Cdh6, exon 11 of 12)",15,13028701,13173675,144975,2,Cdh6-201,132554,Cdh6-201,Cdh6,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,5,12563,ENSMUSG00000039385,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1331,cg00633857,0.0000095,0.00000214,4.445497842,0.0000122,gain,ns,-0.00000501,0.00000363,-1.378628873,0.169003231,neg,ns,-0.000358639,0.001064127,-0.33702645,0.736325021,neg,ns,0.132930441,0.0000288,0.0000366,0.785866505,0.432545955,pos,ns,0.041480656,Fezf2,Fezf2_Intron,14,12346906,12346955,12346954,12346955,50,+,AAAAGACCCTTTTCTAGACAGGCCCCAAGTAAGTTCGGAGGAATTCAGCG,"Intron (Fezf2-202/Fezf2, intron 1 of 5)",14,12343388,12348189,4802,2,Fezf2-202,1234,Fezf2-203;Fezf2-201;Fezf2-202,Fezf2;Fezf2;Fezf2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,45,54713,ENSMUSG00000021743,conserved gene but different region,14,12346941,12346992,52,*,52,7,0.615384615,1.473684211,0.134615385,0.00000171,CpGisland,TRUE,U3,Pr-B
27852,cg18042816,-0.00000641,0.00000222,-2.884690024,0.004192496,loss,ns,0.0000052,0.00000377,1.378607352,0.169009864,pos,ns,0.001567949,0.001105411,1.418430693,0.157069574,pos,ns,0.803907935,-0.0000912,0.000038,-2.399347375,0.017014399,neg,ns,0.941617363,Ush2a,Ush2a_Intron,1,188529993,188530042,188530041,188530042,50,+,GCACATTAATTGGGCACGACACCAGTTCTGGTTTTAATTATTAAACTACG,"Intron (Ush2a-201/Ush2a, intron 21 of 70)",1,188263034,188965041,702008,1,Ush2a-201,266959,Ush2a-201,Ush2a,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,33,36,22283,ENSMUSG00000026609,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
910,cg07588415,0.0000267,0.00000493,5.420934643,0.000000119,gain,yes,-0.0000116,0.00000838,-1.378323541,0.169097349,neg,ns,0.005526318,0.002455099,2.250955579,0.025088737,pos,ns,1.600521199,-0.000273623,0.0000844,-3.240802319,0.001321535,neg,ns,0.050402641,Fam155a,Fam155a_fiveUTR,8,9770982,9771031,9770982,9770983,50,-,CGTCATACTGCCGACACATCCAAGCACCCCTGGTCATATTTTGGGAACGC,Promoter (<=1kb),8,9207627,9771021,563395,2,Fam155a-206,0,Fam155a-201;Fam155a-206;Fam155a-203,Fam155a;Fam155a;Fam155a,0;0;-878,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,4,270028,ENSMUSG00000079157,conserved gene but different region,8,9770903,9771070,168,*,168,13,0.583333333,0.934531451,0.077380952,8.16E-09,CpGisland,TRUE,U3,Pr-B
22128,cg15255894,-0.000000283,0.00000704,-0.040251999,0.967918132,loss,ns,0.0000165,0.000012,1.378323484,0.169097367,pos,ns,0.002649468,0.00350529,0.755848458,0.45031401,pos,ns,0.346484542,0.000056,0.000120547,0.464411332,0.642679056,pos,ns,0.927178469,Osbpl8,Osbpl8_Exon,10,111248588,111248637,111248588,111248589,50,+,CGAAAGCTTGTTCGGAATGCTTCATTTGGAGGATACAATGAACTTTCTCC,"Exon (Osbpl8-205/Osbpl8, exon 1 of 17)",10,111164752,111297249,132498,1,Osbpl8-202,83836,Osbpl8-202;Osbpl8-204;Osbpl8-201;Osbpl8-203;Osbpl8-205,Osbpl8;Osbpl8;Osbpl8;Osbpl8;Osbpl8,0;0;0;14959;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,237542,ENSMUSG00000020189,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5840,cg14490761,-0.00000586,0.0000018,-3.2574332,0.001248912,loss,ns,0.00000421,0.00000306,1.378261605,0.169116446,pos,ns,0.00059299,0.000895031,0.662535509,0.508120353,pos,ns,0.294033409,0.0000227,0.0000308,0.73760336,0.461313453,pos,ns,0.051306295,Etf1,Etf1_fiveUTR,18,34931937,34931986,34931985,34931986,50,+,TGCATGTGTTGCAATCCGCTCACATGGGGCCTGTGACATCACTTCCTCCG,Promoter (<=1kb),18,34902785,34932007,29223,2,Etf1-201,21,Etf1-201,Etf1,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,3,225363,ENSMUSG00000024360,conserved gene but different region,18,34931621,34932559,939,*,939,90,0.656017039,0.891794352,0.095846645,1.71E-66,CpGisland,TRUE,U1,Pr-A
15265,cg14580567,0.00000205,0.00000192,1.067364966,0.286637569,gain,ns,-0.00000451,0.00000327,-1.378174101,0.169143428,neg,ns,0.000257125,0.000957885,0.268429509,0.788547267,pos,ns,0.103172269,-0.00000279,0.0000329,-0.084761535,0.932505687,neg,ns,0.071311193,Hhip,Hhip_fiveUTR,8,80057996,80058045,80058044,80058045,50,+,CACAGCCTCTCATGTTTCGTTCCCTCTTTTCTTCTTCTTTTTAACTAGCG,Promoter (<=1kb),8,79965853,80058006,92154,2,Hhip-201,0,Hhip-201,Hhip,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,2,15245,ENSMUSG00000064325,mapped to different genes,8,80057847,80058292,446,*,446,44,0.715246637,0.796816632,0.098654709,2.03E-33,CpGisland,TRUE,U3,Pr-B
24384,cg05607152,-0.000000163,0.0000037,-0.044025984,0.964912036,loss,ns,0.00000866,0.00000628,1.378162666,0.169146955,pos,ns,0.001761969,0.001840879,0.957134538,0.339245185,pos,ns,0.469486307,-0.0000332,0.0000633,-0.523995584,0.600656037,neg,ns,0.948933281,Glud-ps,Glud-ps_Intergenic_downstream,7,125112986,125113035,125112986,125112987,50,+,CGTCAACCGAGTTTTTATGTAATTATGCAATTTAATGAATTGAAGGCTAC,Distal Intergenic,7,125075351,125076007,657,1,Glud-ps-201,37635,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,3,104277,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24706,cg22305782,0.000000598,0.000000665,0.89826101,0.369743545,gain,ns,-0.00000156,0.00000113,-1.378152804,0.169149996,neg,ns,-0.000683589,0.00033111,-2.064538363,0.039798185,neg,ns,1.400136738,0.0000181,0.0000114,1.587063817,0.113517623,pos,ns,0.985760533,Fbxl19,Fbxl19_fiveUTR,7,127748364,127748413,127748412,127748413,50,+,GGGGATTGCCACTTCTGCCGAGACATGAAGAAGTTCGGGGGGCCCGGGCG,5' UTR,7,127744543,127749714,5172,1,Fbxl19-206,3821,Fbxl19-206;Fbxl19-203;Fbxl19-205;Fbxl19-202;Fbxl19-201;Fbxl19-204;Fbxl19-207,Fbxl19;Fbxl19;Fbxl19;Fbxl19;Fbxl19;Fbxl19;Fbxl19,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,3,233902,ENSMUSG00000030811,conserved gene and region,7,127748254,127748450,197,*,197,27,0.705583756,1.110902256,0.137055838,6.06E-25,CpGisland,TRUE,U11,Tr-P
22647,cg06179614,-0.0000171,0.00000853,-2.006895298,0.045628769,loss,ns,0.00002,0.0000145,1.378122824,0.169159241,pos,ns,0.011440684,0.004245607,2.69471135,0.00742907,pos,ns,2.129065536,-0.000445361,0.000146006,-3.050294521,0.002483564,neg,ns,0.638435628,A930009A15Rik,A930009A15Rik_Intron,10,115571496,115571545,115571496,115571497,50,+,CGGAATCACAATGCAGCTGCAACATTTTATGGTATTTCTGTTGGTTCTCT,"Intron (A930009A15Rik-201/A930009A15Rik, intron 1 of 4)",10,115569986,115582448,12463,1,A930009A15Rik-201,1510,A930009A15Rik-201;Lgr5-201;Lgr5-206;Lgr5-208;Lgr5-202;Lgr5-205;Lgr5-203,A930009A15Rik;Lgr5;Lgr5;Lgr5;Lgr5;Lgr5;Lgr5,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,2,77798,ENSMUSG00000092210,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7560,cg20281703,-0.00000505,0.00000391,-1.293171264,0.196914674,loss,ns,0.00000914,0.00000664,1.377947199,0.16921341,pos,ns,0.006245845,0.001944278,3.212424129,0.001454561,pos,ns,2.837267927,-0.000258133,0.0000669,-3.860588901,0.000137683,neg,ns,0.906098901,Zbtb20,Zbtb20_Intron,16,43221950,43221999,43221998,43221999,50,+,ATGAATCAGTACAGCCATGCTTTGTTCTGCATGAGTGTTTTAATAGAGCG,"Intron (Zbtb20-209/Zbtb20, intron 4 of 7)",16,42875881,43463175,587295,1,Zbtb20-209,346069,Zbtb20-209;Zbtb20-211;Zbtb20-217;Zbtb20-218;Zbtb20-204,Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,98,56490,ENSMUSG00000022708,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14414,cg04846076,0.000095,0.00001,9.497941774,6.04E-19,gain,yes,-0.0000234,0.000017,-1.37781445,0.169254363,neg,ns,0.018178812,0.004980646,3.649890557,0.000307777,pos,ns,3.511763653,-0.000633199,0.000171284,-3.696778473,0.000258143,neg,ns,0.097971675,Ctif,Ctif_Intron,18,75502869,75502918,75502917,75502918,50,+,TCACTTTCACAACCCAGAACAAAAATCTCGCTAGATATGGCCTCAGACCG,"Intron (Ctif-201/Ctif, intron 9 of 11)",18,75431224,75697554,266331,2,Ctif-201,194636,Ctif-201,Ctif,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,4,269037,ENSMUSG00000052928,conserved gene and region,18,75502906,75503000,95,*,95,10,0.663157895,1.032608696,0.105263158,3.77E-08,CpGisland,TRUE,NA,NRS
22927,cg00989341,0.0000141,0.00000387,3.650108942,0.000307526,gain,ns,-0.00000906,0.00000658,-1.377475357,0.169359008,neg,ns,0.004451449,0.001927132,2.309882236,0.021551362,pos,ns,1.666525279,-0.000161662,0.0000663,-2.439298376,0.015276388,neg,ns,0.921384255,Exoc7,Exoc7_Exon,11,116293269,116293318,116293317,116293318,50,-,GCTTACCTCGGGGGTCTAAAGGAATATTGTATGTGTCCCCAAGAACTACG,"Exon (Exoc7-201/Exoc7, exon 13 of 20)",11,116288001,116306734,18734,2,Exoc7-201,13416,Exoc7-201;Exoc7-202;Exoc7-203;Exoc7-208;Exoc7-209;Exoc7-210;Exoc7-207;Exoc7-205,Exoc7;Exoc7;Exoc7;Exoc7;Exoc7;Exoc7;Exoc7;Exoc7,0;0;0;0;-2789;-1799;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,53413,ENSMUSG00000020792,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24999,cg08408385,0.00000445,0.00000703,0.631889199,0.52792499,gain,ns,0.0000165,0.000012,1.377450691,0.169366621,pos,ns,0.000803854,0.00350125,0.229590644,0.818561287,pos,ns,0.086948799,0.0000137,0.000120408,0.113707626,0.909543171,pos,ns,0.591285404,Ptpru,Ptpru_Intergenic_downstream,4,131405631,131405680,131405679,131405680,50,+,AATTATATTGTCAGCAGTTAATTATCACTTGTTAAACAAGCGTGCGCCCG,Distal Intergenic,4,131768458,131768921,464,2,Ptpru-207,363241,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,3,19273,ENSMUSG00000028909,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3920,cg21691694,0.00000424,0.00000285,1.486160694,0.1382529,gain,ns,0.00000668,0.00000485,1.377378971,0.169388761,pos,ns,-0.000970054,0.001420544,-0.682875036,0.495195806,neg,ns,0.305223042,0.0000635,0.0000489,1.299836347,0.194622751,pos,ns,0.007922832,Celf4,Celf4_Exon,18,25753559,25753608,25753607,25753608,50,+,GAGCCCGTTGGTACTGAGGCTTGCGTTGTCAGCCTGTCCGTTTGCTAACG,Promoter (<=1kb),18,25477632,25753983,276352,2,Celf4-202,375,Celf4-202;Celf4-201;Celf4-203;Celf4-207;Celf4-206;Celf4-209;Celf4-205,Celf4;Celf4;Celf4;Celf4;Celf4;Celf4;Celf4,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,31,59,108013,ENSMUSG00000024268,conserved gene and region,18,25753376,25753608,233,*,233,18,0.592274678,0.882575758,0.077253219,5.03E-12,CpGisland,TRUE,U3,Pr-B
16228,cg03151610,0.00000166,0.00000265,0.625528231,0.532084649,gain,ns,-0.0000062,0.0000045,-1.377378366,0.169388948,neg,ns,-0.001267871,0.001319349,-0.960982711,0.337309805,neg,ns,0.471971034,-0.0000125,0.0000454,-0.275257387,0.783301874,neg,ns,0.945366635,Cyp26b1,Cyp26b1_Intergenic_upstream,6,84616104,84616153,84616104,84616105,50,-,CGAGACCCATTTACAGGAGGAAATAGACCCATCATTGAGCCTAGAGAATG,Distal Intergenic,6,84571944,84593908,21965,2,Cyp26b1-202,-22245,Exoc6b-203,Exoc6b,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,9,232174,ENSMUSG00000063415,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5159,cg02136371,-0.00000569,0.00000167,-3.398464835,0.000766192,loss,ns,0.00000392,0.00000284,1.377337735,0.169401492,pos,ns,0.002001294,0.000833462,2.401183451,0.016930854,pos,ns,1.771321123,-0.0000621,0.0000287,-2.167796512,0.030934905,neg,ns,0.968355811,Bach2,Bach2_threeUTR,4,32585722,32585771,32585770,32585771,50,+,CAGGTTACATCAGGTGTTTTTCTACATACTTTTTACACAGATTCTATGCG,3' UTR,4,32238804,32586104,347301,1,Bach2-202,346918,Bach2-202;Bach2-201;Bach2-207,Bach2;Bach2;Bach2,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,14,12014,ENSMUSG00000040270,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5382,cg08253452,-0.00000758,0.0000123,-0.618136664,0.53693912,loss,ns,-0.0000287,0.0000208,-1.37731738,0.169407776,neg,ns,-0.009079707,0.006105556,-1.487122139,0.137998945,neg,ns,0.860124233,-0.0000408,0.00020997,-0.194157728,0.846179549,neg,ns,0.66707702,Gm9370,Gm9370_Intergenic_upstream,12,33675316,33675365,33675364,33675365,50,-,TAATTTGCAACTTATCAAACATGATTGAACCTTGTTCTTTTGTGTAAACG,Distal Intergenic,12,33846454,33847062,609,1,Gm9370-201,-171138,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,668806,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9849,cg04805552,-0.0000276,0.00000883,-3.126351172,0.00193765,loss,ns,-0.0000207,0.000015,-1.377292668,0.169415406,neg,ns,-0.005959449,0.004395967,-1.355662952,0.176193218,neg,ns,0.754010813,-0.000045,0.000151177,-0.29790395,0.765976028,neg,ns,0.8503103,Tbc1d5,Tbc1d5_Intron,17,51111461,51111510,51111509,51111510,50,+,ACTGTATAATTATACTTGAAAATTTAGCAAGATGCCCAGAGGCTGACTCG,"Intron (Tbc1d5-201/Tbc1d5, intron 2 of 21)",17,50733124,51179168,446045,2,Tbc1d5-201,67658,Tbc1d5-201;Tbc1d5-207;Tbc1d5-205;Tbc1d5-208;Tbc1d5-203;Tbc1d5-202;Tbc1d5-206;Tbc1d5-209,Tbc1d5;Tbc1d5;Tbc1d5;Tbc1d5;Tbc1d5;Tbc1d5;Tbc1d5;Tbc1d5,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,14,72238,ENSMUSG00000023923,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4329,cg04827261,-0.0000111,0.00000416,-2.676522299,0.007834766,loss,ns,-0.00000972,0.00000706,-1.377080548,0.169480907,neg,ns,0.0000831,0.002068633,0.040186959,0.967969943,pos,ns,0.014138128,-0.0000012,0.0000711,-0.016847045,0.986569477,neg,ns,0.876108149,Samd4b,Samd4b_threeUTR,7,28401852,28401901,28401900,28401901,50,-,ACACAGAGACTCCAGAGTGGGATTGATCTCCAGGTCAGGCCCAGGAACCG,3' UTR,7,28399522,28436191,36670,2,Samd4b-204,34290,Paf1-201;Paf1-202;Paf1-207;Paf1-205;Paf1-208;Samd4b-204;Samd4b-201;Samd4b-203;Samd4b-202,Paf1;Paf1;Paf1;Paf1;Paf1;Samd4b;Samd4b;Samd4b;Samd4b,8901;8811;6027;5201;3418;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,9,11,233033,ENSMUSG00000109336,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10219,cg02758817,0.0000915,0.00000662,13.81750151,3.63E-34,gain,yes,-0.0000155,0.0000113,-1.377064059,0.169485999,neg,ns,0.007260607,0.003297299,2.20198607,0.028402478,pos,ns,1.546643774,-0.000077,0.000113394,-0.678781721,0.4977826,neg,ns,0.191773038,Hoxa11,Hoxa11_Exon,6,52245652,52245701,52245700,52245701,50,+,ACGTAGTAAGTACAACTTGGCAAATACATGTTAGAGGAGCAGGGACCACG,Promoter (<=1kb),6,52242106,52245810,3705,2,Hoxa11-201,109,Hoxa10-201;Hoxa10-204;Hoxa11-201;Hoxa11-202,Hoxa10;Hoxa10;Hoxa11;Hoxa11,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,15,18,15396,ENSMUSG00000038210,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
2307,cg17980874,-0.00000347,0.00000138,-2.515037856,0.012407614,loss,ns,-0.00000323,0.00000234,-1.376966492,0.169516135,neg,ns,-0.000605392,0.000686166,-0.882282991,0.378307404,neg,ns,0.422155159,0.0000157,0.0000236,0.663576983,0.507454267,pos,ns,0.040768752,Irf2bp1,Irf2bp1_Exon,7,19004475,19004524,19004523,19004524,50,+,CCTGTGCGACCTGCCCAAGATGCCGTGGGCCATGGTGTGGGACTTCAGCG,Promoter (<=1kb),7,19004044,19006777,2734,1,Irf2bp1-201,431,Irf2bp1-201;Mypop-201;Mypop-203,Irf2bp1;Mypop;Mypop,0;13230;13156,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,4,272359,ENSMUSG00000044030,conserved gene and region,7,19004289,19004888,600,*,600,71,0.735,0.877192983,0.118333333,9.63E-60,CpGisland,TRUE,U1,Pr-A
384,cg03137308,-0.00000814,0.0000057,-1.428069693,0.154278459,loss,ns,0.0000133,0.00000968,1.376959118,0.169518412,pos,ns,0.006766944,0.00283648,2.385683526,0.017647631,pos,ns,1.753313577,-0.000245176,0.0000975,-2.513433877,0.012463018,neg,ns,0.872183664,Zfhx4,Zfhx4_Exon,3,5330163,5330212,5330211,5330212,50,+,TTAACTTGTTTTTGCTTTGGTTGACCTGGTGCAGGGAAACAGCTAACACG,"Exon (Zfhx4-202/Zfhx4, exon 2 of 2)",3,5218526,5413165,194640,1,Zfhx4-203,111637,Zfhx4-203;Zfhx4-202;Zfhx4-201;Zfhx4-205,Zfhx4;Zfhx4;Zfhx4;Zfhx4,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,23,77,80892,ENSMUSG00000025255,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16241,cg15639581,-0.00000542,0.00000177,-3.055722673,0.002440348,loss,ns,0.00000415,0.00000301,1.376839109,0.169555485,pos,ns,0.000553143,0.000883239,0.626266105,0.531601274,pos,ns,0.274413987,-0.00000611,0.0000304,-0.201267475,0.840621429,neg,ns,0.038474847,Cacna1a,Cacna1a_Exon,8,84639231,84639280,84639231,84639232,50,-,CGTGTAGGGCAGTAGTTCCGTAAGTGGAAGCCCAGCCCCCTCAACATCTG,"Exon (Cacna1a-213/Cacna1a, exon 49 of 49)",8,84338639,84640246,301608,1,Cacna1a-213,300592,Cacna1a-213;Cacna1a-201;Cacna1a-202;Cacna1a-211;Cacna1a-212;Cacna1a-209;Cacna1a-205,Cacna1a;Cacna1a;Cacna1a;Cacna1a;Cacna1a;Cacna1a;Cacna1a,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,12,12286,ENSMUSG00000034656,conserved gene but different region,8,84638921,84639790,870,*,870,122,0.712643678,1.111704635,0.140229885,1.01E-112,CpGisland,TRUE,U1,Pr-A
4842,cg18735163,-0.00000906,0.00000298,-3.039031933,0.002575484,loss,ns,0.00000698,0.00000507,1.376734001,0.16958796,pos,ns,0.001760237,0.001484365,1.185852461,0.236588703,pos,ns,0.626005997,-0.000118253,0.000051,-2.316552114,0.021179861,neg,ns,0.929230743,Phc3,Phc3_Exon,3,30948732,30948781,30948732,30948733,50,-,CGATGACGACGAGACAACAGGAATGTCAGACTGTACAGCAGCCACAGTGG,"Exon (Phc3-209/Phc3, exon 6 of 15)",3,30899371,30969401,70031,2,Phc3-209,20620,Phc3-209;Phc3-201;Phc3-204;Phc3-208;Phc3-202;Phc3-206;Phc3-210;Phc3-203,Phc3;Phc3;Phc3;Phc3;Phc3;Phc3;Phc3;Phc3,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,8,241915,ENSMUSG00000037652,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17375,cg02934228,0.000187514,0.0000144,13.00186263,3.82E-31,gain,yes,-0.0000337,0.0000245,-1.376366183,0.169701639,neg,ns,0.021561678,0.007178006,3.003853242,0.002883099,pos,ns,2.540140504,-0.000496335,0.000246851,-2.010666755,0.045226319,neg,ns,0.18704571,Gbx2,Gbx2_Exon,1,89931942,89931991,89931942,89931943,50,-,CGTGAGATTATCCTGATGAAAGCTTTATGATGTTTGCTCAAATAAAAGCT,Promoter (<=1kb),1,89927956,89931179,3224,2,Gbx2-201,-812,Gbx2-201;Gbx2-202,Gbx2;Gbx2,0;-2757,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,13,14472,ENSMUSG00000034486,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
8214,cg16662420,0.000013,0.0000112,1.163993619,0.24532166,gain,ns,0.0000262,0.000019,1.376267255,0.169732224,pos,ns,0.010063153,0.005578766,1.803831253,0.072228431,pos,ns,1.141291821,-0.000241564,0.000191853,-1.259106979,0.208938959,neg,ns,0.617811252,Gm5246,Gm5246_Intergenic_downstream,19,44867723,44867772,44867771,44867772,50,-,ATCATTAATGGGCTAAACAGCAGGGTCAGCGAGGCAGGTAGCAGTAAACG,Distal Intergenic,19,44851009,44851979,971,1,Gm5246-201,16763,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,20,383450,NA,mapped to different genes,19,44867743,44867851,109,*,109,11,0.651376147,0.984400657,0.100917431,9.65E-09,CpGisland,TRUE,U11,Tr-P
11866,cg21815808,0.0000241,0.0000052,4.635772815,0.00000525,gain,ns,-0.0000122,0.00000884,-1.376255447,0.169735875,neg,ns,0.003692693,0.002590373,1.425544929,0.155005854,pos,ns,0.809651899,-0.000168442,0.0000891,-1.890852492,0.059576352,neg,ns,0.042475731,Tle3,Tle3_Promoter,9,61368738,61368787,61368738,61368739,50,-,CGTGGGGTGGACTCCGAGGTACTCAATTAAGCAGCCAATGAAAAGTCAGC,Promoter (3-4kb),9,61372366,61418497,46132,1,Tle3-218,-3628,Tle3-218;Tle3-204;Tle3-201;Tle3-215;Tle3-212;Tle3-208;Tle3-207;Tle3-217;Tle3-202;Tle3-206;Tle3-210;Tle3-205;Tle3-211,Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3,0;0;0;0;0;0;0;0;0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,11,30,21887,ENSMUSG00000032280,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14925,cg03372131,0.0000263,0.00000746,3.529351865,0.000479703,gain,ns,0.0000174,0.0000127,1.376205944,0.169751181,pos,ns,0.01358864,0.0037136,3.659155605,0.000297308,pos,ns,3.526793429,-0.00000504,0.00012771,-0.039438886,0.968565864,neg,ns,0.173904636,Nr2f1,Nr2f1_Intron,13,78177821,78177870,78177869,78177870,50,+,TGATTTATTGCTTTTAAAAGTAAATTTACACACATGCCAGCAGCGCTCCG,"Intron (3110006O06Rik-201/3110006O06Rik-201, intron 1 of 1)",13,78189872,78190443,572,2,Nr2f1-204,12573,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,55,13865,ENSMUSG00000069171,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
8189,cg21344984,0.0000381,0.00000557,6.842287607,4.17E-11,gain,yes,-0.000013,0.00000946,-1.376126488,0.169775751,neg,ns,-0.002716913,0.002772062,-0.980105252,0.32779843,neg,ns,0.484393131,0.000207256,0.0000953,2.174062796,0.030456686,pos,ns,0.13312382,Pax2,Pax2_threeUTR,19,44836006,44836055,44836006,44836007,50,+,CGCTGCCTATGACCGCCACTAGTTACCGCGGGGACCACATCAAGCTTCAG,3' UTR,19,44756045,44837851,81807,1,Pax2-203,79961,Pax2-203;Pax2-201,Pax2;Pax2,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,166,18504,ENSMUSG00000004231,conserved gene and region,19,44835973,44836413,441,*,441,44,0.725623583,0.798387097,0.099773243,1.19E-33,CpGisland,TRUE,U3,Pr-B
18515,cg19637724,0.0000197,0.00000386,5.112145952,0.000000559,gain,yes,-0.00000902,0.00000655,-1.375920986,0.16983931,neg,ns,-0.000894165,0.001920291,-0.465640455,0.641799847,neg,ns,0.192600391,0.00012779,0.000066,1.935077893,0.053890133,pos,ns,0.086539356,Hoxb9,Hoxb9_Promoter,11,96271184,96271233,96271184,96271185,50,-,CGTGATAGCACATTGCATCAGCATAAAACAATCCATCCTCGATATGGAGT,Promoter (<=1kb),11,96271457,96276595,5139,1,Hoxb9-201,-273,Hoxb9-201;Hoxb9-202,Hoxb9;Hoxb9,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,7,22,15417,ENSMUSG00000020875,mapped to different genes,11,96271037,96271185,149,*,149,13,0.718120805,0.694265233,0.087248322,1.82E-09,CpGisland,TRUE,U13,Hc-P
20492,cg05932603,-0.000000264,0.00000467,-0.056530629,0.954955514,loss,ns,0.0000109,0.00000794,1.375860027,0.169858168,pos,ns,0.005349202,0.002325598,2.30013979,0.022104241,pos,ns,1.655524385,-0.0000868,0.00008,-1.08575157,0.278432495,neg,ns,0.936816585,Mier1,Mier1_fiveUTR,4,103115599,103115648,103115647,103115648,50,-,TTCGGACGTGGTTAAGAACCAACTGGTTGAGGTTCAATGCAGACAAGACG,Promoter (<=1kb),4,103115638,103165749,50112,1,Mier1-202,0,Mier1-209;Mier1-205;Mier1-210;Mier1-214;Mier1-211;Mier1-212;Mier1-208;Mier1-201;Mier1-202;Mier1-213;Mier1-204;Mier1-215;Mier1-206;Wdr78-201;Wdr78-202;Wdr78-204;Wdr78-203,Mier1;Mier1;Mier1;Mier1;Mier1;Mier1;Mier1;Mier1;Mier1;Mier1;Mier1;Mier1;Mier1;Wdr78;Wdr78;Wdr78;Wdr78,0;0;0;0;0;0;0;0;0;-1647;0;0;0;-1300;-1300;-1375;-1044,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,4,71148,ENSMUSG00000028522,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13087,cg10718793,-0.00000513,0.00000459,-1.116780197,0.264953147,loss,ns,-0.0000107,0.0000078,-1.375809998,0.169873645,neg,ns,0.001765125,0.002286054,0.772127402,0.440627199,pos,ns,0.355928698,-0.000086,0.0000786,-1.093989008,0.274809118,neg,ns,0.823507274,Tcf4,Tcf4_Intron,18,69399529,69399578,69399577,69399578,50,+,TACCACCCCATCCTGGTGTCCCGTCTGTTCATAAATAACTCTTTCATCCG,"Intron (Tcf4-259/Tcf4, intron 3 of 6)",18,69343356,69564082,220727,1,Tcf4-259,56173,Tcf4-259;Tcf4-201;Tcf4-207;Tcf4-210;Tcf4-240;Tcf4-254;Tcf4-246;Tcf4-206;Tcf4-202;Tcf4-257;Tcf4-232;Tcf4-215;Tcf4-248;Tcf4-231;Tcf4-205;Tcf4-253;Tcf4-233;Tcf4-238;Tcf4-245;Tcf4-249;Tcf4-219;Tcf4-235;Tcf4-227,Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,42,66,21413,ENSMUSG00000053477,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
771,cg03734252,-0.0000353,0.00000735,-4.798647591,0.00000249,loss,ns,0.0000172,0.0000125,1.37568334,0.169912834,pos,ns,0.015681207,0.003656592,4.288476096,0.0000241,pos,ns,4.618714216,-0.00052107,0.00012575,-4.143703423,0.0000441,neg,ns,0.846915943,Pum2,Pum2_fiveUTR,12,8698097,8698146,8698145,8698146,50,+,TCTGTGGATGAAATGAATCATGATTTTCAAGCTCTTGCATTAGAATCTCG,5' UTR,12,8674134,8751454,77321,1,Pum2-203,23963,Pum2-203;Pum2-216;Pum2-201;Pum2-202;Pum2-211;Pum2-207;Pum2-204;Pum2-210;Pum2-209;Pum2-212;Pum2-205;Pum2-208;Pum2-213,Pum2;Pum2;Pum2;Pum2;Pum2;Pum2;Pum2;Pum2;Pum2;Pum2;Pum2;Pum2;Pum2,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,11,80913,ENSMUSG00000020594,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11560,cg24642372,0.0000873,0.00000997,8.752850572,1.37E-16,gain,yes,-0.0000233,0.0000169,-1.375459933,0.169981974,neg,ns,0.009442598,0.004963171,1.902533073,0.058027969,pos,ns,1.236362627,-0.000290587,0.000170683,-1.702491918,0.089665615,neg,ns,0.125399476,Chsy3,Chsy3_Exon,18,59176409,59176458,59176457,59176458,50,+,ATCAAGTACATGCACGACCACTACCTGGACAAGTATGAGTGGTTCATGCG,"Exon (Chsy3-202/Chsy3, exon 1 of 2)",18,59175401,59182021,6621,1,Chsy3-202,1008,Chsy3-202;Chsy3-203;Chsy3-201,Chsy3;Chsy3;Chsy3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,78923,ENSMUSG00000058152,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
15665,cg19658895,-0.00000148,0.00000219,-0.678297476,0.498089099,loss,ns,0.00000511,0.00000372,1.375430918,0.169990955,pos,ns,0.003341917,0.001088834,3.06926314,0.002335543,pos,ns,2.63161216,-0.000118702,0.0000374,-3.170047032,0.001676437,neg,ns,0.951847853,Zfp236,Zfp236_Exon,18,82680701,82680750,82680749,82680750,50,-,AGTGTCAGGTTGAATTCAACATTAAATGTTTGGGGGCACTGGTCACATCG,"Exon (Zfp236-201/Zfp236, exon 3 of 30)",18,82593593,82692883,99291,2,Zfp236-201,12133,Zfp236-201;Zfp236-202;Zfp236-205;Zfp236-204;Zfp236-207,Zfp236;Zfp236;Zfp236;Zfp236;Zfp236,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,329002,ENSMUSG00000041258,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7531,cg02492629,0.0000602,0.0000102,5.905495864,9.23E-09,gain,yes,-0.0000238,0.0000173,-1.375165719,0.170073059,neg,ns,0.001111931,0.005075559,0.219075643,0.826735291,pos,ns,0.082633523,-0.000146557,0.000174548,-0.839634456,0.401760422,neg,ns,0.622172441,Stoml2,Stoml2_Exon,4,43030463,43030512,43030463,43030464,50,+,CGTTGATGACAATTTCCTTGAGACTCTGCACATATCGGATCCGGTCTAAC,Promoter (<=1kb),4,43029615,43030499,885,2,Stoml2-209,0,Fam214b-204;Fam214b-205;Fam214b-202;Fam214b-203;Fam214b-201;Fam214b-207;Pigo-202;Pigo-201;Pigo-203;Stoml2-201;Stoml2-203;Stoml2-211;Stoml2-207;Stoml2-206;Stoml2-202;Stoml2-208;Stoml2-209;Stoml2-210;Stoml2-205;Stoml2-204,Fam214b;Fam214b;Fam214b;Fam214b;Fam214b;Fam214b;Pigo;Pigo;Pigo;Stoml2;Stoml2;Stoml2;Stoml2;Stoml2;Stoml2;Stoml2;Stoml2;Stoml2;Stoml2;Stoml2,0;0;0;0;0;0;-4707;-4644;-4996;0;-626;-549;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,66592,ENSMUSG00000028455,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18616,cg19826361,0.000118274,0.0000157,7.513359076,6.22E-13,gain,yes,-0.0000368,0.0000267,-1.375116958,0.170088159,neg,ns,0.024121168,0.007834854,3.078700558,0.002264962,pos,ns,2.644938988,-0.001005793,0.00026944,-3.73290197,0.000225155,neg,ns,0.180831278,Hoxb3,Hoxb3_Intron,11,96324348,96324397,96324348,96324349,50,-,CGATTAGCTCAGTATTAGAACCACAAAATGACCTCGGAAGCCCCTTGACC,"Intron (Hoxb3-202/Hoxb3, intron 1 of 3)",11,96323326,96347930,24605,1,Hoxb3-202,1022,Hoxb3-202;Hoxb3-203;Hoxb4-201,Hoxb3;Hoxb3;Hoxb4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,19,15410,ENSMUSG00000048763,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
2192,cg24726326,-0.00000746,0.00000638,-1.16972249,0.243011211,loss,ns,-0.0000149,0.0000108,-1.375003807,0.170123201,neg,ns,-0.003658997,0.003176112,-1.152036468,0.250193746,neg,ns,0.601723551,0.0000843,0.000109226,0.771835263,0.440799972,pos,ns,0.903586605,Cyp7b1,Cyp7b1_Exon,3,18341904,18341953,18341904,18341905,50,+,CGTCTGGTGTTGTCCTTATGTGGTTACTGACCATGAAGAGAGATGATTAG,"Exon (Gm30667-201/Gm30667-201, exon 6 of 6)",3,18071950,18243338,171389,2,Cyp7b1-201,-98566,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,17,13123,ENSMUSG00000039519,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14222,cg06824013,0.0000144,0.00000342,4.204796829,0.0000342,gain,ns,0.00000799,0.00000581,1.374792883,0.170188538,pos,ns,0.007864453,0.001703527,4.616571916,0.00000572,pos,ns,5.242450929,-0.000138473,0.0000586,-2.363652121,0.018712406,neg,ns,0.057676302,Onecut1,Onecut1_Exon,9,74848410,74848459,74848410,74848411,50,-,CGTCAGGCAGCTCCTGGAGATCGAACCTTTCGATTGTAACTGGGACAATT,"Exon (Gm16551-203/Gm16551-203, exon 1 of 3)",9,74861921,74891781,29861,1,Onecut1-201,-13511,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,16,28,15379,ENSMUSG00000043013,conserved gene and region,9,74848332,74848441,110,*,110,13,0.654545455,1.111111111,0.118181818,3.31E-11,CpGisland,TRUE,U1,Pr-A
11127,cg00388556,0.0000735,0.00000658,11.18370603,1.28E-24,gain,yes,-0.0000154,0.0000112,-1.374647538,0.170233572,neg,ns,-0.002904452,0.003272687,-0.887482473,0.375507221,neg,ns,0.425381707,0.000227248,0.000112547,2.019126726,0.044334486,pos,ns,0.166057479,Pax9,Pax9_Promoter,12,56691330,56691379,56691330,56691331,50,+,CGCTAATATGGGGAAACTGAAAAGAAATGTCGATTGTTTTTATTGTAATA,Promoter (<=1kb),12,56691767,56712707,20941,1,Pax9-203,-388,Pax9-203;Pax9-201;Pax9-202,Pax9;Pax9;Pax9,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,3,7,18511,ENSMUSG00000001497,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17008,cg16591739,-0.0000336,0.0000209,-1.606378069,0.109208956,loss,ns,-0.0000489,0.0000356,-1.374600394,0.170248181,neg,ns,-0.000701709,0.010421779,-0.067331032,0.946361578,neg,ns,0.0239429,-0.000341611,0.000358404,-0.953145433,0.341258985,neg,ns,0.579257327,Cnbp,Cnbp_Exon,6,87845257,87845306,87845257,87845258,50,-,CGCTCTCTCTTGGGCTCCTTGCAGTCCTTGGCAATGTGGCCACCTCTACC,"Exon (Cnbp-201/Cnbp, exon 4 of 5)",6,87842615,87851106,8492,2,Cnbp-201,5800,Cnbp-201;Cnbp-208;Cnbp-209;Cnbp-203;Cnbp-202;Cnbp-205;Cnbp-207;Cnbp-204;Cnbp-206,Cnbp;Cnbp;Cnbp;Cnbp;Cnbp;Cnbp;Cnbp;Cnbp;Cnbp,0;0;0;0;0;0;0;0;1011,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,12785,ENSMUSG00000030057,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1768,cg26052854,-0.0000703,0.0000134,-5.241151915,0.000000296,loss,yes,0.0000313,0.0000228,1.374517247,0.170273949,pos,ns,-0.00453851,0.006675228,-0.679903284,0.497073104,neg,ns,0.303579736,-0.000154906,0.000229561,-0.674795463,0.500308669,neg,ns,0.787231596,Foxp2,Foxp2_Intron,6,15123812,15123861,15123860,15123861,50,-,AAAGTAATTGGGGTTTTAAAACCCCAATCTATTCTGCCAGCATGAGCTCG,"Intron (Foxp2-207/Foxp2, intron 3 of 18)",6,14901349,15441977,540629,1,Foxp2-207,222463,Foxp2-207;Foxp2-213;Foxp2-208;Foxp2-211;Foxp2-217,Foxp2;Foxp2;Foxp2;Foxp2;Foxp2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,38,65,114142,ENSMUSG00000029563,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6578,cg16514315,0.0000288,0.00000471,6.101158037,3.14E-09,gain,yes,-0.000011,0.00000801,-1.374368822,0.170319955,neg,ns,0.005744299,0.002345823,2.448734414,0.014889564,pos,ns,1.827118015,-0.000116172,0.0000807,-1.440037244,0.150865968,neg,ns,0.067249487,Zfp536,Zfp536_Exon,7,37773319,37773368,37773367,37773368,50,-,GTCACTACTTTGCATTCCTGCCTTTGACTAAAGAATTTTTTATCCAGCCG,Promoter (<=1kb),7,37569629,37773641,204013,2,Zfp536-208,273,Zfp536-202;Zfp536-201;Zfp536-203;Zfp536-206;Zfp536-209;Zfp536-208;Zfp536-205;Zfp536-207;Zfp536-210,Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536,0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,13,112,243937,ENSMUSG00000043456,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
24651,cg04490243,-0.000016,0.0000065,-2.460602331,0.014415375,loss,ns,-0.0000152,0.000011,-1.374127638,0.170394732,neg,ns,-0.003870699,0.003235002,-1.196506061,0.232413415,neg,ns,0.633738808,0.0000659,0.000111251,0.592454838,0.553977944,pos,ns,0.867742426,Fbrs,Fbrs_Exon,7,127485121,127485170,127485121,127485122,50,-,CGGCCCGGCCCCTGGCCTTCCAGTTCCACCAGCACAACCACCAGCACCAG,"Exon (Fbrs-202/Fbrs, exon 8 of 18)",7,127479199,127491506,12308,1,Fbrs-202,5922,Fbrs-202;Fbrs-207;Fbrs-209;Fbrs-201;Fbrs-204;Fbrs-205;Fbrs-208;Fbrs-203;Fbrs-206,Fbrs;Fbrs;Fbrs;Fbrs;Fbrs;Fbrs;Fbrs;Fbrs;Fbrs,0;0;5106;-51;-238;-471;-477;-1679;-1893,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,14123,ENSMUSG00000042423,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10742,cg00578937,-0.00000376,0.00000126,-2.977880849,0.003131452,loss,ns,0.00000294,0.00000214,1.374125065,0.17039553,pos,ns,0.000253502,0.000627867,0.403750224,0.686674769,pos,ns,0.16324891,-0.0000158,0.0000216,-0.732801547,0.464233204,neg,ns,0.033658468,Zfhx2,Zfhx2_fiveUTR,14,55091989,55092038,55091989,55091990,50,-,CGGAAATCGATGCACTTACACCTCAGCTGGAAGCAGGGACGGGAGTCGAA,Promoter (<=1kb),14,55060262,55092324,32063,2,Zfhx2-201,286,Thtpa-201;Zfhx2-201;Zfhx2-204,Thtpa;Zfhx2;Zfhx2,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,8,239102,ENSMUSG00000040721,mapped to different genes,14,55091989,55092102,114,*,114,12,0.675438597,0.970212766,0.105263158,9.79E-10,CpGisland,TRUE,U2,Pr-W
11765,cg03742417,-0.00000456,0.00000376,-1.213285898,0.225944187,loss,ns,-0.00000877,0.00000638,-1.373855107,0.170479257,neg,ns,-0.002884402,0.001870145,-1.542341514,0.124010778,neg,ns,0.906540568,-0.0000442,0.0000643,-0.687887328,0.492038112,neg,ns,0.05275246,Mbnl1,Mbnl1_Exon,3,60528364,60528413,60528364,60528365,50,+,CGCGACCTTTCATAAGACAACCCACACTATTGGCTTTCTGCCCAGAATAT,"Exon (Mbnl1-208/Mbnl1, exon 1 of 2)",3,60472830,60595764,122935,1,Mbnl1-222,55534,Mbnl1-222;Mbnl1-221;Mbnl1-216;Mbnl1-220;Mbnl1-211;Mbnl1-204;Mbnl1-201;Mbnl1-209;Mbnl1-202;Mbnl1-225;Mbnl1-217;Mbnl1-203;Mbnl1-218;Mbnl1-208;Mbnl1-219;Mbnl1-214;Mbnl1-207;Mbnl1-205;Mbnl1-212,Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,19,36,56758,ENSMUSG00000027763,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
14557,cg09129144,-0.00000274,0.00000228,-1.19996915,0.231067567,loss,ns,0.00000532,0.00000387,1.373828811,0.170487415,pos,ns,0.00000746,0.001135081,0.006576203,0.994757217,pos,ns,0.002282901,0.0000695,0.000039,1.77936777,0.076159162,pos,ns,0.952682058,Tsc22d1,Tsc22d1_Exon,14,76418950,76418999,76418998,76418999,50,+,TCTTTTCCCGTTGAAGGTGCTACCGCTGACGACACCCCTGGTGGATGGCG,"Exon (Tsc22d1-204/Tsc22d1, exon 3 of 5)",14,76414961,76507762,92802,1,Tsc22d1-204,3989,Tsc22d1-204;Tsc22d1-202;Tsc22d1-215;Tsc22d1-213;Tsc22d1-212;Tsc22d1-211;Tsc22d1-216,Tsc22d1;Tsc22d1;Tsc22d1;Tsc22d1;Tsc22d1;Tsc22d1;Tsc22d1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,10,21807,ENSMUSG00000022010,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8588,cg11479269,0.000000385,0.00000371,0.103869016,0.917340461,gain,ns,0.00000866,0.0000063,1.373799599,0.170496477,pos,ns,-0.000665128,0.001846806,-0.360150679,0.718979705,neg,ns,0.143283368,0.00000787,0.0000635,0.123926194,0.901454026,pos,ns,0.916546059,Pcdh10,Pcdh10_Intron,3,45385250,45385299,45385298,45385299,50,+,AATGAGACTTGAGAACTGCCAAGAATCCCCGGAGGTCTCTGCCCCTTGCG,"Intron (Pcdh10-203/Pcdh10, intron 3 of 4)",3,45378406,45402645,24240,1,Pcdh10-203,6844,Pcdh10-204;Pcdh10-203;Pcdh10-201;Pcdh10-202;Pcdh10-205,Pcdh10;Pcdh10;Pcdh10;Pcdh10;Pcdh10,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,5,18526,ENSMUSG00000049100,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5075,cg19381443,-0.0000019,0.00000482,-0.394219808,0.693689811,loss,ns,-0.0000112,0.00000819,-1.373596975,0.170559346,neg,ns,0.000313461,0.002398978,0.130664582,0.896125402,pos,ns,0.047631212,-0.0000775,0.0000825,-0.93923149,0.348343134,neg,ns,0.945434678,Prrc2b,Prrc2b_fiveUTR,2,32182508,32182557,32182508,32182509,50,+,CGCAATGTCCGATCGTTTGGGGCAAATTACCAAGGGCAAGGATGGGAAAA,5' UTR,2,32151082,32234537,83456,1,Prrc2b-201,31426,Prrc2b-201;Prrc2b-202;Prrc2b-206,Prrc2b;Prrc2b;Prrc2b,0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,6,227723,ENSMUSG00000039262,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12631,cg15222697,0.0000131,0.00000334,3.934167539,0.00010308,gain,ns,-0.00000779,0.00000567,-1.37335684,0.170633877,neg,ns,-0.001790783,0.001662563,-1.077121496,0.282263476,neg,ns,0.549345315,0.00000474,0.0000572,0.082955642,0.93394035,pos,ns,0.846634709,Csnk1g1,Csnk1g1_Exon,9,66019820,66019869,66019820,66019821,50,+,CGAGGAGAGTGGGAAATTCAGCCCAGCCGGCAGACCAATACCTCATACCT,"Exon (Csnk1g1-212/Csnk1g1, exon 11 of 13)",9,65908924,66041906,132983,1,Csnk1g1-209,110896,Csnk1g1-209;Csnk1g1-212;Csnk1g1-201;Csnk1g1-214;Csnk1g1-202;Csnk1g1-204;Csnk1g1-213;Csnk1g1-211;Csnk1g1-215;Csnk1g1-205,Csnk1g1;Csnk1g1;Csnk1g1;Csnk1g1;Csnk1g1;Csnk1g1;Csnk1g1;Csnk1g1;Csnk1g1;Csnk1g1,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,4,214897,ENSMUSG00000032384,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12142,cg16981766,-0.00000714,0.00000317,-2.253439817,0.024929986,loss,ns,-0.00000739,0.00000538,-1.373252475,0.170666276,neg,ns,-0.001978392,0.001576713,-1.254757236,0.210512054,neg,ns,0.676723032,0.0000195,0.0000542,0.359468042,0.71948972,pos,ns,0.933745365,Ino80d,Ino80d_fiveUTR,1,63093457,63093506,63093505,63093506,50,-,GCTTATTGTCAACCTCAGAGAAGTGTATATGTTTCCCTTCATACATCACG,5' UTR,1,63047801,63114267,66467,2,Ino80d-205,20761,Ino80d-202;Ino80d-205;Ino80d-206;Ino80d-201;Ino80d-203;Ino80d-204,Ino80d;Ino80d;Ino80d;Ino80d;Ino80d;Ino80d,0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,9,12,227195,ENSMUSG00000040865,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10092,cg01912337,0.000127765,0.0000128,10.00205257,1.35E-20,gain,yes,-0.0000298,0.0000217,-1.3731281,0.170704893,neg,ns,0.020918305,0.006357698,3.290232373,0.001116417,pos,ns,2.952173539,-0.000516132,0.000218641,-2.360641316,0.018862219,neg,ns,0.166716143,Gm28308,Gm28308_Intron,6,52165212,52165261,52165260,52165261,50,+,CGGGAAGACGCCTCGCACCTCACAAATCATTTAAGCACCTCAGTCTGACG,"Intron (Gm28308-201/Gm28308, intron 3 of 3)",6,52163359,52213339,49981,2,Gm28308-201,48078,Gm28308-201;Hoxa2-201;Hoxa3-201,Gm28308;Hoxa2;Hoxa3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,46,103,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9503,cg11768290,5.26E-08,0.00000706,0.007444602,0.99406491,gain,ns,0.0000165,0.000012,1.37298685,0.170748758,pos,ns,0.007214024,0.003513765,2.053075511,0.040904192,pos,ns,1.388232186,-0.000223843,0.000120838,-1.852422827,0.064915544,neg,ns,0.855947889,Nav2,Nav2_Exon,7,48965952,48966001,48966000,48966001,50,+,ATCAATTGGTCATGCTCAGCTGACATTCATTTTAACTTGAACTCTAGCCG,"Exon (Nav2-203/Nav2, exon 2 of 2)",7,48959073,48967836,8764,1,Nav2-203,6879,Nav2-210;Nav2-203;Nav2-204,Nav2;Nav2;Nav2,57236;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,7,78286,ENSMUSG00000052512,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6451,cg23475389,-0.0000236,0.0000088,-2.676188456,0.007842395,loss,ns,-0.0000205,0.000015,-1.372888075,0.170779438,neg,ns,-0.013994943,0.004380709,-3.19467552,0.001543954,neg,ns,2.811365616,0.0000609,0.000150652,0.404474761,0.686142558,pos,ns,0.790625572,Tenm2,Tenm2_Intergenic_upstream,11,37316370,37316419,37316370,37316371,50,-,CGAGCAGAGTTTAAGGAGGGCTAATGTCACCCATTCGTCTTAATTAAAGA,Distal Intergenic,11,36944205,37235964,291760,2,Tenm2-207,-80455,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,9,84,23964,ENSMUSG00000049336,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22183,cg16787483,0.000025,0.0000169,1.47753679,0.140547015,gain,ns,0.0000394,0.0000287,1.372847275,0.170792111,pos,ns,0.007836345,0.008406416,0.932186183,0.351965745,pos,ns,0.453499602,0.0000224,0.000289096,0.077421047,0.938338544,pos,ns,0.756654052,Slitrk5,Slitrk5_Exon,14,111679505,111679554,111679553,111679554,50,-,ATCTTTTGTCCAGTTTACCCAACAATCTTTTCCGTTTTGTGCCCTTAACG,"Exon (Slitrk5-201/Slitrk5, exon 2 of 2)",14,111675097,111683141,8045,1,Slitrk5-201,4408,Slitrk5-201;Slitrk5-202,Slitrk5;Slitrk5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,Exon,10,10,75409,ENSMUSG00000033214,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
23642,cg26026725,0.00000137,0.00000208,0.656711748,0.511853484,gain,ns,-0.00000485,0.00000354,-1.372730273,0.170828459,neg,ns,-0.002933192,0.00103596,-2.831374256,0.004937885,neg,ns,2.306459018,0.0000423,0.0000356,1.188289378,0.235628973,pos,ns,0.968495271,Acvr2b,Acvr2b_Exon,9,119427496,119427545,119427544,119427545,50,-,TACAACGCCAACTGGGAGCTGGAGCGCACCAACCAGAGCGGCCTGGAGCG,"Exon (Acvr2b-202/Acvr2b, exon 2 of 10)",9,119402118,119433515,31398,1,Acvr2b-202,25378,Acvr2b-202;Acvr2b-201;Acvr2b-205;Acvr2b-206;Acvr2b-203;Acvr2b-204,Acvr2b;Acvr2b;Acvr2b;Acvr2b;Acvr2b;Acvr2b,0;0;0;-2801;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,6,11481,ENSMUSG00000061393,conserved gene and region,9,119427391,119427613,223,*,223,19,0.650224215,0.806433194,0.085201794,1.84E-13,CpGisland,TRUE,U11,Tr-P
13322,cg09570719,-0.000115331,0.0000198,-5.821161976,1.46E-08,loss,yes,-0.0000462,0.0000337,-1.372424796,0.170923387,neg,ns,-0.03147937,0.00986078,-3.192381321,0.001555873,neg,ns,2.808025835,-0.001069064,0.000339111,-3.152546186,0.001776881,neg,ns,0.726704985,Bin3,Bin3_Promoter,14,70096181,70096230,70096181,70096182,50,-,CGTTATCTGCAGCAATCCACGGTGACTAATGCTCCCAGTTGGTAAAAAGG,Promoter (3-4kb),14,70100105,70138206,38102,1,Bin3-201,-3924,Bin3-201;Bin3-203;Bin3-202;Bin3-205;Bin3-204,Bin3;Bin3;Bin3;Bin3;Bin3,0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,4,57784,ENSMUSG00000022089,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7297,cg06907391,0.0000798,0.00000661,12.07508227,8.92E-28,gain,yes,-0.0000154,0.0000112,-1.372409674,0.170928087,neg,ns,0.01106215,0.003289361,3.363008839,0.000867686,pos,ns,3.061637642,-0.000157118,0.000113121,-1.388939664,0.165848089,neg,ns,0.10156236,Gabra1,Gabra1_fiveUTR,11,42182447,42182496,42182447,42182448,50,-,CGGATGTGAAATAGGCGGTGACTTCATGCCAGAGAGATTTTATTTTAGAA,Promoter (<=1kb),11,42177290,42182460,5171,2,Gabra1-204,0,Gabra1-205;Gabra1-201;Gabra1-207;Gabra1-208;Gabra1-203;Gabra1-202;Gabra1-204;Gabra1-206,Gabra1;Gabra1;Gabra1;Gabra1;Gabra1;Gabra1;Gabra1;Gabra1,-284;0;-2604;-343;-2491;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,3,14394,ENSMUSG00000010803,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21801,cg23730260,0.00000411,0.00000233,1.766837137,0.078239475,gain,ns,-0.00000542,0.00000395,-1.372234634,0.1709825,neg,ns,0.001121877,0.001158064,0.968751586,0.333424345,pos,ns,0.477002693,-0.0000407,0.0000398,-1.023001272,0.307104882,neg,ns,0.063965417,Lmo1,Lmo1_Promoter,7,109175376,109175425,109175424,109175425,50,+,AGATTCCCCTGTTAATTAAATCAATTCATTATGCTCAGATCTGATTAGCG,Promoter (<=1kb),7,109138675,109175207,36533,2,Lmo1-202,-169,Lmo1-201;Lmo1-202;Lmo1-203,Lmo1;Lmo1;Lmo1,0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,4,66,109594,ENSMUSG00000036111,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
12102,cg10288485,0.0000808,0.00000693,11.65451212,2.83E-26,gain,yes,-0.0000162,0.0000118,-1.371860339,0.171098897,neg,ns,0.01166386,0.003451019,3.379830719,0.000818064,pos,ns,3.087212702,-0.000266694,0.00011868,-2.247162027,0.025332855,neg,ns,0.072774698,Spock3,Spock3_Exon,8,62951940,62951989,62951988,62951989,50,+,AATCTCTCAGTATGACAAGGAAGTCGGACAGTGGAACAAATTCCGAGACG,Promoter (<=1kb),8,62951009,63356852,405844,1,Spock3-202,931,Spock3-202;Spock3-203;Spock3-205;Spock3-204;Spock3-201;Spock3-206,Spock3;Spock3;Spock3;Spock3;Spock3;Spock3,0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,72902,ENSMUSG00000054162,conserved gene but different region,8,62951837,62952103,267,*,267,20,0.595505618,0.869990225,0.074906367,4.78E-13,CpGisland,TRUE,U15,NS
5626,cg07925213,-0.0000176,0.00000557,-3.150429639,0.001789399,loss,ns,-0.000013,0.00000947,-1.371777315,0.171124724,neg,ns,0.000147667,0.002774735,0.053218324,0.957592234,pos,ns,0.018819385,-0.000101873,0.0000954,-1.067593053,0.28653479,neg,ns,0.869981967,Fam193a,Fam193a_Exon,5,34410691,34410740,34410739,34410740,50,+,TAAGACTGCGAGCAAATTGGCCCTTTCCATGGCTCCCAAGGGCAACAGCG,"Exon (Fam193a-202/Fam193a, exon 2 of 21)",5,34369933,34486456,116524,1,Fam193a-202,40758,Fam193a-202,Fam193a,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,4,231128,ENSMUSG00000037210,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
12664,cg19638215,-0.000028,0.000014,-1.996119826,0.046795359,loss,ns,0.0000326,0.0000238,1.371747574,0.171133976,pos,ns,0.013622593,0.006970044,1.954448654,0.051546887,pos,ns,1.287797559,-0.000567337,0.000239699,-2.366871057,0.018553394,neg,ns,0.765300129,Herc1,Herc1_Exon,9,66461693,66461742,66461741,66461742,50,+,TTCTGAGCGGGATTATACCGCTCTGTGCAGGCCCACAGGAATCAAAGTCG,"Exon (Herc1-201/Herc1, exon 44 of 78)",9,66350526,66508775,158250,1,Herc1-201,111167,Herc1-201;Herc1-204,Herc1;Herc1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,15,15,235439,ENSMUSG00000038664,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22316,cg01930645,0.000074,0.00000573,12.9039755,8.73E-31,gain,yes,-0.0000134,0.00000974,-1.371652892,0.171163434,neg,ns,0.007326174,0.002852828,2.568038856,0.01069589,pos,ns,1.97078307,-0.0000759,0.0000981,-0.773266991,0.439953611,neg,ns,0.129002387,Lhfpl4,Lhfpl4_Exon,6,113194106,113194155,113194154,113194155,50,+,CCACCACGTTGATGATGGCGAAGCAGATGGTGAAGATGGCCCACAGCACG,"Exon (Lhfpl4-201/Lhfpl4, exon 2 of 4)",6,113168090,113195384,27295,2,Lhfpl4-201,1229,Lhfpl4-201;Lhfpl4-202,Lhfpl4;Lhfpl4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,7,269788,ENSMUSG00000042873,conserved gene and region,6,113193884,113194365,482,*,482,42,0.668049793,0.8053467,0.08713693,1.49E-29,CpGisland,TRUE,U13,Hc-P
25382,cg20485144,-0.0000341,0.0000197,-1.733702608,0.083965099,loss,ns,-0.0000458,0.0000334,-1.371606289,0.171177935,neg,ns,0.069664026,0.009782997,7.120929022,7.51E-12,pos,yes,11.12419439,-0.000432384,0.000336436,-1.285188513,0.199685764,neg,ns,0.104215286,Id3,Id3_Promoter,4,136143340,136143389,136143340,136143341,50,-,CGAACAGCAAATTGGGGAACAAGGCGGCACTAATTCCTTACAAGTTTCCC,Promoter (<=1kb),4,136143497,136145392,1896,1,Id3-201,-157,Id3-201;Id3-203;Id3-202,Id3;Id3;Id3,-108;-475;-1585,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,9,9,15903,ENSMUSG00000007872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2700,cg07793203,-0.00000457,0.00000174,-2.629746588,0.008971177,loss,ns,0.00000405,0.00000295,1.371585038,0.171184548,pos,ns,0.000715717,0.000864603,0.827798759,0.408421279,pos,ns,0.388891639,-0.00000397,0.0000297,-0.133571595,0.893828015,neg,ns,0.043610108,Ywhaq,Ywhaq_Exon,12,21417782,21417831,21417782,21417783,50,-,CGGCCACGGGGTTTCCTCCAATTAGATCCAGGGTAAAAGGACGTCACTGT,Promoter (<=1kb),12,21390071,21417637,27567,2,Ywhaq-202,-194,Ywhaq-202;Ywhaq-201;Ywhaq-205;Ywhaq-203,Ywhaq;Ywhaq;Ywhaq;Ywhaq,-145;-346;-194;-652,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,22630,ENSMUSG00000076432,conserved gene but different region,12,21416728,21417993,1266,*,1266,131,0.67535545,0.91097147,0.103475513,3.61E-101,CpGisland,TRUE,NA,NRS
2480,cg12459391,-0.0000135,0.00000879,-1.542011474,0.12409095,loss,ns,0.0000205,0.0000149,1.371564063,0.171191075,pos,ns,0.012890072,0.004373048,2.947617539,0.003445475,pos,ns,2.462750942,-0.000365504,0.000150389,-2.43039764,0.015649389,neg,ns,0.820527452,Pkhd1,Pkhd1_Intergenic_downstream,1,19900307,19900356,19900307,19900308,50,+,CGTGCACTTTAATACAAGCTGCCTATAATTAATGGCATTATTAATAGCTT,Distal Intergenic,1,20374722,20409448,34727,2,Pkhd1-203,509092,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,25,241035,ENSMUSG00000043760,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5896,cg25236676,0.000000343,0.000000922,0.372073293,0.710092494,gain,ns,0.00000215,0.00000157,1.371154532,0.171318549,pos,ns,0.000174471,0.000458728,0.380337542,0.703955339,pos,ns,0.152454893,-0.00000434,0.0000158,-0.275224528,0.783327094,neg,ns,0.971284106,Ctnna1,Ctnna1_threeUTR,18,35174360,35174409,35174360,35174361,50,+,CGGTTGCTGATTTTGGCTGACATGGCAGATGTCTACAAATTACTTGTTCA,3' UTR,18,35118859,35254779,135921,1,Ctnna1-201,55501,Ctnna1-201;Ctnna1-206;Ctnna1-207;Ctnna1-204;Ctnna1-208;Ctnna1-210,Ctnna1;Ctnna1;Ctnna1;Ctnna1;Ctnna1;Ctnna1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,13,12385,ENSMUSG00000037815,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17397,cg09845883,0.00000182,0.00000223,0.815403149,0.415467615,gain,ns,0.00000519,0.00000378,1.371061974,0.17134737,pos,ns,0.003428757,0.001108008,3.094524895,0.002151008,pos,ns,2.667358005,-0.0000499,0.0000381,-1.309337268,0.191389752,neg,ns,0.950602346,Ubap2l,Ubap2l_Exon,3,90047800,90047849,90047848,90047849,50,-,TTGGTTTTGAGGTTGTTCCCAGTTTCCCCGGGCTCGGTTAGTGCCCACCG,"Exon (Ubap2l-215/Ubap2l, exon 2 of 27)",3,90000140,90052455,52316,2,Ubap2l-215,4606,4933434E20Rik-203;4933434E20Rik-205;4933434E20Rik-204;4933434E20Rik-201;4933434E20Rik-208;Ubap2l-215;Ubap2l-201;Ubap2l-202;Ubap2l-208;Ubap2l-203;Ubap2l-204;Ubap2l-220;Ubap2l-205;Ubap2l-206;Ubap2l-214;Ubap2l-213;Ubap2l-221;Ubap2l-209,4933434E20Rik;4933434E20Rik;4933434E20Rik;4933434E20Rik;4933434E20Rik;Ubap2l;Ubap2l;Ubap2l;Ubap2l;Ubap2l;Ubap2l;Ubap2l;Ubap2l;Ubap2l;Ubap2l;Ubap2l;Ubap2l;Ubap2l,-3787;-4965;-4980;-4988;-4993;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,14,15,74383,ENSMUSG00000042520,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10981,cg11147006,-0.00000925,0.00000605,-1.528517434,0.127403813,loss,ns,-0.0000141,0.0000103,-1.370902777,0.171396949,neg,ns,-0.009633785,0.003010623,-3.199930544,0.001516971,neg,ns,2.819022842,0.000126245,0.000103535,1.219346099,0.223639805,pos,ns,0.844448474,Gm12520,Gm12520_Intron,4,55989268,55989317,55989316,55989317,50,+,GGACATAAGCTAGCAGCTCACAATGGGGCCTGATGGGACATGTTGCATCG,"Intron (Gm12519-201/Gm12519-201, intron 1 of 6)",4,56162940,56163255,316,1,Gm12520-201,-173623,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,3,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20610,cg21820469,-0.00000764,0.00000178,-4.281374609,0.0000248,loss,ns,0.00000416,0.00000303,1.370838246,0.171417049,pos,ns,0.000315686,0.000888238,0.355407108,0.722526327,pos,ns,0.141146324,-0.0000153,0.0000305,-0.501146786,0.616623485,neg,ns,0.065237677,Rsbn1,Rsbn1_Exon,3,103914990,103915039,103914990,103914991,50,-,CGGGCCCAAGCATAAGGGCCACAAGGAGCGGCACAAGCACCATCACCACC,Promoter (<=1kb),3,103914120,103966613,52494,1,Rsbn1-201,870,Ptpn22-204;Ptpn22-201;Ptpn22-202;Rsbn1-201;Rsbn1-202;Rsbn1-203,Ptpn22;Ptpn22;Ptpn22;Rsbn1;Rsbn1;Rsbn1,55195;54713;12951;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,16,229675,ENSMUSG00000044098,conserved gene and region,3,103914092,103915120,1029,*,1029,106,0.664723032,0.937553185,0.103012634,8.89E-82,CpGisland,TRUE,U1,Pr-A
13669,cg25005357.2,0.00000269,0.00000438,0.613047021,0.540294743,gain,ns,0.0000102,0.00000745,1.370791812,0.171431513,pos,ns,-0.003771278,0.002181729,-1.728573375,0.08488116,neg,ns,1.071188696,-0.000115348,0.000075,-1.537374411,0.125221674,neg,ns,0.880309724,Tcf12,Tcf12_Intron,9,71975247,71975296,71975295,71975296,50,+,TCAAATTCCAGTCAAGGTACAAGTAGAGCAGAACTTCATTTCAGCCCCCG,"Intron (Tcf12-202/Tcf12, intron 5 of 20)",9,71842688,72111847,269160,2,Tcf12-202,136551,Tcf12-202;Tcf12-201;Tcf12-220;Tcf12-221;Tcf12-218;Tcf12-216;Tcf12-208;Tcf12-210;Tcf12-214;Tcf12-205;Tcf12-203;Tcf12-211;Tcf12-204;Tcf12-212,Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,12,21406,ENSMUSG00000032228,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8265,cg03310899,-0.00000579,0.00000206,-2.816056103,0.005173285,loss,ns,0.00000479,0.0000035,1.37054951,0.171507005,pos,ns,0.00220377,0.001024108,2.151892837,0.032177788,pos,ns,1.492443818,-0.000062,0.0000352,-1.76137901,0.079160043,neg,ns,0.940431697,Ebf1,Ebf1_Exon,11,44907886,44907935,44907934,44907935,50,+,TTCATGTGTGTTGAAAAGCAGCTACTCCCTGTATCAAAGCCATCAGCCCG,"Exon (Ebf1-203/Ebf1, exon 9 of 16)",11,44617317,45004995,387679,1,Ebf1-203,290569,Ebf1-203;Ebf1-202;Ebf1-201;Ebf1-206,Ebf1;Ebf1;Ebf1;Ebf1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,15,80,13591,ENSMUSG00000057098,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10601,cg06790494,-0.00000637,0.00000219,-2.904857407,0.003938383,loss,ns,-0.00000511,0.00000373,-1.370441377,0.171540704,neg,ns,-0.002245809,0.001092166,-2.05628934,0.040591492,neg,ns,1.391564985,0.0000589,0.0000376,1.567810489,0.117945519,pos,ns,0.9552853,Acin1,Acin1_Exon,14,54650863,54650912,54650863,54650864,50,-,CGGGCGGATTACCGTACATGAGGTACTTGGACAAAGTTTTACGGGGAAGA,"Exon (Acin1-213/Acin1, exon 4 of 4)",14,54642161,54653616,11456,2,Acin1-208,2704,Acin1-208;Acin1-216;Acin1-202;Acin1-201;Acin1-219;Acin1-218;Acin1-221;Acin1-224;Acin1-203;Acin1-222;Acin1-205;Acin1-211;Acin1-225;Acin1-207;Acin1-204;Acin1-226;Acin1-213;Acin1-214;Acin1-209;Acin1-220;Gm17606-201,Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Gm17606,0;0;0;0;0;0;0;0;0;-4997;0;-4816;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,22,56215,ENSMUSG00000022185,conserved gene but different region,14,54650681,54650905,225,*,225,16,0.6,0.802854594,0.071111111,3.42E-10,CpGisland,TRUE,U10,Tr-S
7331,cg12187762,0.0000808,0.00000843,9.581264626,3.25E-19,gain,yes,-0.0000196,0.0000143,-1.370303021,0.171583828,neg,ns,0.01398783,0.004196853,3.332932985,0.000963458,pos,ns,3.016167347,-0.000319552,0.000144329,-2.214045737,0.027553063,neg,ns,0.045001182,Ptchd4,Ptchd4_Exon,17,42316844,42316893,42316844,42316845,50,+,CGACCTGGAGCGCCTGGTCGCTCCCAGCCACAGCCTGGCCAAGATCGAGC,Promoter (<=1kb),17,42315947,42505077,189131,1,Ptchd4-201,897,Ptchd4-201;Ptchd4-203;Ptchd4-202,Ptchd4;Ptchd4;Ptchd4,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,9,627626,ENSMUSG00000042256,conserved gene and region,17,42316751,42316894,144,*,144,14,0.673611111,0.884210526,0.097222222,8.03E-11,CpGisland,TRUE,U13,Hc-P
4988,cg15032244,0.0000327,0.00000502,6.524282859,2.78E-10,gain,yes,-0.0000117,0.00000852,-1.37016539,0.171626734,neg,ns,0.005272979,0.00249728,2.111489116,0.035530344,pos,ns,1.44940059,-0.000155307,0.0000859,-1.808395541,0.071513856,neg,ns,0.03594481,Prkg1,Prkg1_Exon,19,31664149,31664198,31664149,31664150,50,-,CGTTCTGCAGCTTCTGGATCAGTTCGTCCTTCTGATCCAACTCCAGCTCC,"Exon (Prkg1-202/Prkg1, exon 1 of 18)",19,30564489,31765033,1200545,2,Prkg1-201,100835,Prkg1-201;Prkg1-202,Prkg1;Prkg1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,13,19091,ENSMUSG00000052920,conserved gene and region,19,31664002,31664401,400,*,400,33,0.635,0.825774163,0.0825,1.52E-22,CpGisland,TRUE,U3,Pr-B
1783,cg21872788,-0.0000368,0.00000968,-3.799933938,0.000174208,loss,ns,0.0000225,0.0000164,1.369780086,0.171746895,pos,ns,0.004427169,0.004819103,0.918670874,0.358981976,pos,ns,0.444927356,-0.000251452,0.000165729,-1.517249439,0.130222801,neg,ns,0.845634594,Foxp2,Foxp2_Intron,6,15188069,15188118,15188069,15188070,50,+,CGACATAAATGATGCAGTTAAGCAGTGGAATCTCATTTGCATATGCTTAA,"Intron (Foxp2-207/Foxp2, intron 3 of 18)",6,14901349,15441977,540629,1,Foxp2-207,286720,Foxp2-207;Foxp2-213;Foxp2-208;Foxp2-211;Foxp2-217;Foxp2-203;Foxp2-216;Foxp2-205;Foxp2-204;Foxp2-201;Foxp2-210,Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,38,65,114142,ENSMUSG00000029563,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7512,cg16103501,0.00017391,0.0000206,8.435196492,1.27E-15,gain,yes,-0.000048,0.000035,-1.369482007,0.171839898,neg,ns,0.048464733,0.010261412,4.723008256,0.00000353,pos,ns,5.45262432,-0.00105711,0.000352889,-2.995588132,0.002960099,neg,ns,0.451888225,Zbtb20,Zbtb20_Intron,16,42924827,42924876,42924827,42924828,50,+,CGCAATTTTAGAACTTGTTTGTGATTGCATCAATTGGTTTTTATTTTCAA,"Intron (Zbtb20-209/Zbtb20, intron 2 of 7)",16,42875881,43463175,587295,1,Zbtb20-209,48946,Zbtb20-209;Zbtb20-210;Zbtb20-211;Zbtb20-217;Zbtb20-218;Zbtb20-204,Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,98,56490,ENSMUSG00000022708,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17463,cg23575948,-0.00000243,0.00000666,-0.364163581,0.715984119,loss,ns,0.0000155,0.0000113,1.369236681,0.17191647,pos,ns,0.004301175,0.003316469,1.296914146,0.195625176,pos,ns,0.708575255,-0.000380421,0.000114053,-3.335475758,0.000954995,neg,ns,0.820604554,Nrxn3,Nrxn3_threeUTR,12,90332218,90332267,90332266,90332267,50,+,CTGCATCTTGATCCTCCTGTACGCCATGTACAAGTACAGGAACAGGGACG,3' UTR,12,88722986,90332878,1609893,1,Nrxn3-213,1609232,Nrxn3-213;Nrxn3-208;Nrxn3-205;Nrxn3-201;Nrxn3-210;Nrxn3-214;Nrxn3-203;Nrxn3-202,Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,14,39,18191,ENSMUSG00000066392,conserved gene and region,12,90332093,90332366,274,*,274,16,0.591240876,0.669108669,0.058394161,6.19E-09,CpGisland,TRUE,NA,NRS
13805,cg20662616,0.0000261,0.00000648,4.02764731,0.0000709,gain,ns,-0.0000151,0.000011,-1.369166991,0.171938226,neg,ns,-0.011566798,0.003224781,-3.586848031,0.000388766,neg,ns,3.410311644,0.000379049,0.0001109,3.417937547,0.000715275,pos,ns,0.097611028,Lbh,Lbh_fiveUTR,17,72918543,72918592,72918591,72918592,50,+,CTAGGACTTCATGTCTATATATTTCCCCATTCACTGGTGAGTACCCTGCG,Promoter (<=1kb),17,72918305,72941947,23643,1,Lbh-201,238,Lbh-201;Lbh-202,Lbh;Lbh,0;-2596,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,1,77889,ENSMUSG00000024063,conserved gene but different region,17,72918591,72918846,256,*,256,20,0.65234375,0.748538012,0.078125,2.11E-13,CpGisland,TRUE,U1,Pr-A
11422,cg03761238,-0.0000108,0.00000441,-2.44216765,0.015157834,loss,ns,0.0000103,0.00000749,1.369032762,0.171980137,pos,ns,-0.00388929,0.002193801,-1.772854242,0.077234796,neg,ns,1.112186994,0.0000966,0.0000754,1.280456246,0.201341954,pos,ns,0.773760275,Ccdc33,Ccdc33_Intron,9,58065567,58065616,58065615,58065616,50,-,GCCCAGATCAAAACACTCAGCAGCTAAATGAATTCGGCAGCATTTTCCCG,"Intron (Stra6-210/Stra6, intron 1 of 4)",9,58028677,58102297,73621,2,Ccdc33-201,36681,Ccdc33-201;Ccdc33-203;Ccdc33-210;Ccdc33-204;Ccdc33-208;Stra6-210,Ccdc33;Ccdc33;Ccdc33;Ccdc33;Ccdc33;Stra6,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,8,382077,ENSMUSG00000037716,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3318,cg00747868,-0.00000691,0.00000457,-1.512952607,0.13131049,loss,ns,0.0000106,0.00000776,1.369004781,0.171988874,pos,ns,0.002339808,0.002272481,1.029627203,0.3039877,pos,ns,0.517143989,-0.000121122,0.0000782,-1.549862785,0.122194719,neg,ns,0.915160132,Gm11890,Gm11890_Intergenic_downstream,4,23591258,23591307,23591258,23591259,50,+,CGAATTACAAAAATGTCATTCTCTAAAGGAAATGGATGAAGGCTTTTGTT,Distal Intergenic,4,23659928,23660344,417,2,Gm11890-201,69037,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,32,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23655,cg22086703,-0.0000112,0.0000024,-4.684599263,0.0000042,loss,ns,-0.00000558,0.00000408,-1.368750143,0.172068405,neg,ns,-0.002272122,0.001194212,-1.902611829,0.058017645,neg,ns,1.236439906,-0.0000255,0.0000411,-0.621934906,0.534441801,neg,ns,0.956286195,Mbtps1,Mbtps1_Exon,8,119521774,119521823,119521822,119521823,50,-,ACTTCACTTTTCTCATAACAGAAGTGTTGTACCAGTCACTGAAGATGACG,"Exon (Mbtps1-206/Mbtps1, exon 15 of 22)",8,119508156,119558705,50550,2,Mbtps1-206,36882,Mbtps1-206;Mbtps1-202;Mbtps1-201;Mbtps1-207;Mbtps1-205,Mbtps1;Mbtps1;Mbtps1;Mbtps1;Mbtps1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,56453,ENSMUSG00000031835,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20748,cg04275146,-0.0000334,0.000011,-3.041329948,0.002556479,loss,ns,0.0000255,0.0000187,1.368699186,0.172084323,pos,ns,0.011521925,0.005465657,2.108058425,0.03582833,pos,ns,1.445773437,-0.000705531,0.000187964,-3.753555109,0.000208125,neg,ns,0.740479618,Ccdc73,Ccdc73_Intron,2,104893985,104894034,104894033,104894034,50,-,AACTGTAGTGACAAATGGCTTCATGCTGTGTGATTAAATGCATATTAGCG,"Intron (Ccdc73-202/Ccdc73, intron 1 of 7)",2,104867805,104951567,83763,1,Ccdc73-202,26180,Ccdc73-202;Ccdc73-201,Ccdc73;Ccdc73,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,3,211936,ENSMUSG00000045106,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16101,cg16822926,-0.00000186,0.00000953,-0.195122266,0.845425054,loss,ns,0.0000222,0.0000162,1.36857017,0.172124632,pos,ns,0.008925048,0.004745242,1.880841424,0.060930691,pos,ns,1.215163897,-0.000280003,0.000163188,-1.71582679,0.087192854,neg,ns,0.875114891,Zfp407,Zfp407_Intron,18,84407679,84407728,84407727,84407728,50,-,AAAGAAATTTTTTCCTAAGTAATATAGGAAACAACTCGGCTAACCTTCCG,"Intron (Zfp407-201/Zfp407, intron 2 of 2)",18,84128027,84558425,430399,2,Zfp407-201,150697,Zfp407-201;Zfp407-202;Zfp407-203,Zfp407;Zfp407;Zfp407,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,32,240476,ENSMUSG00000048410,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11192,cg10517458,0.00000383,0.00000267,1.434757274,0.152364333,gain,ns,-0.0000062,0.00000453,-1.368522064,0.172139663,neg,ns,0.001017192,0.00132779,0.766078644,0.444212432,pos,ns,0.352409291,-0.0000479,0.0000457,-1.048054649,0.295429852,neg,ns,0.888298773,Satb2,Satb2_Exon,1,56948114,56948163,56948162,56948163,50,-,AGGGCCAGGAGCGCAGTCTCCACCAGCTGGCTAAAAAGCACATCTTTCCG,"Exon (Satb2-202/Satb2, exon 3 of 11)",1,56793981,56972502,178522,2,Satb2-201,24339,Satb2-201;Satb2-202;Satb2-205;Satb2-203,Satb2;Satb2;Satb2;Satb2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,33,212712,ENSMUSG00000038331,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1616,cg25716835,-0.0000085,0.00000327,-2.598343482,0.009814956,loss,ns,0.0000076,0.00000555,1.368504405,0.172145182,pos,ns,0.001981044,0.001627325,1.217362225,0.224392303,pos,ns,0.648992044,-0.0000403,0.000056,-0.719750463,0.472220926,neg,ns,0.945518319,Runx1t1,Runx1t1_Exon,4,13859845,13859894,13859893,13859894,50,+,CACTCAGAACATCCAAGCAAGCGACCATGCACTATTAGCCCAGGCCAGCG,"Exon (Runx1t1-201/Runx1t1, exon 6 of 11)",4,13743436,13893649,150214,1,Runx1t1-201,116409,Runx1t1-201;Runx1t1-204;Runx1t1-203;Runx1t1-202,Runx1t1;Runx1t1;Runx1t1;Runx1t1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,24,12395,ENSMUSG00000006586,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14115,cg03212000,0.0000653,0.0000101,6.464719303,3.94E-10,gain,yes,-0.0000235,0.0000172,-1.36830058,0.172208883,neg,ns,0.003797712,0.005026307,0.755567,0.450482551,pos,ns,0.346322026,-0.00014306,0.000172854,-0.827630794,0.408516279,neg,ns,0.252792915,Hoxd11,Hoxd11_Exon,2,74685669,74685718,74685717,74685718,50,+,CTTCCAAAATGTCAAGGTCATCACCTTTAACCTTTCTGAATAATTAGGCG,"Exon (Hoxd11-201/Hoxd11, exon 2 of 2)",2,74679557,74687016,7460,1,Hoxd11-201,6112,Hoxd11-201;Hoxd11-202,Hoxd11;Hoxd11,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,14,15431,ENSMUSG00000042499,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
21539,cg04960897,-0.00000802,0.00000157,-5.099498116,0.000000594,loss,yes,0.00000366,0.00000267,1.368296088,0.172210287,pos,ns,-0.000401989,0.000783047,-0.513365299,0.608061483,neg,ns,0.216052506,0.000000167,0.0000269,0.006183024,0.995070669,pos,ns,0.0669383,Ppp1r12a,Ppp1r12a_Exon,10,108162591,108162640,108162591,108162592,50,+,CGACATCAATTACGCCAATGTGGACGGACTCACTGCCCTGCACCAGGTCT,Promoter (<=1kb),10,108162193,108277351,115159,1,Ppp1r12a-205,398,Ppp1r12a-205;Ppp1r12a-201,Ppp1r12a;Ppp1r12a,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,8,17931,ENSMUSG00000019907,conserved gene and region,10,108161556,108162873,1318,*,1318,157,0.7215478,0.920620373,0.119119879,7.64E-132,CpGisland,TRUE,U1,Pr-A
18744,cg18815657,-0.000081,0.0000149,-5.418730859,0.000000121,loss,yes,0.0000347,0.0000254,1.368256993,0.172222507,pos,ns,-0.018357956,0.00743613,-2.468751463,0.01409757,neg,ns,1.850855748,-0.0000505,0.000255728,-0.197306946,0.843716648,neg,ns,0.693548728,Fam169a,Fam169a_Exon,13,97097582,97097631,97097582,97097583,50,-,CGAATTATTTATAGAAAACAGGAAATGGAGAGAAATGAGATCCCATTCCT,"Exon (Fam169a-202/Fam169a, exon 5 of 13)",13,97067286,97131013,63728,1,Fam169a-202,30296,Fam169a-202;Fam169a-201;Gm6169-201,Fam169a;Fam169a;Gm6169,0;0;1606,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,320557,ENSMUSG00000041817,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25434,cg02915968,-0.0000312,0.00000649,-4.810315589,0.00000236,loss,ns,0.0000151,0.000011,1.368253872,0.172223483,pos,ns,-0.006297337,0.003230991,-1.94904212,0.052192122,neg,ns,1.282395047,0.000357646,0.000111114,3.21874267,0.001423912,pos,ns,0.926194497,Cux1,Cux1_Intron,5,136564730,136564779,136564730,136564731,50,-,CGGGTTTTACAGTAAGCACAGGAATTAAATTATGGTAAAAGGGAGCTATT,"Intron (Cux1-207/Cux1, intron 1 of 22)",5,136248135,136567248,319114,2,Cux1-207,2469,Cux1-207;Cux1-211;Cux1-203;Cux1-213;Cux1-201;Cux1-204;Cux1-212;Cux1-206;Cux1-210;Cux1-214,Cux1;Cux1;Cux1;Cux1;Cux1;Cux1;Cux1;Cux1;Cux1;Cux1,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,21,13047,ENSMUSG00000029705,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
101,cg00976917,-0.00000624,0.00000229,-2.728813553,0.006719117,loss,ns,-0.00000531,0.00000388,-1.368219136,0.172234342,neg,ns,0.00442504,0.001137657,3.889610195,0.000122893,pos,ns,3.910473425,-0.000129666,0.0000391,-3.314251671,0.001027806,neg,ns,0.945184626,Crebbp,Crebbp_Exon,16,4137475,4137524,4137523,4137524,50,-,GGCAACTATGACCAGAAAAACAACGAGATGTTATTTTTCTATCCAAATCG,"Exon (Crebbp-201/Crebbp, exon 5 of 31)",16,4081328,4213997,132670,2,Crebbp-201,76473,Crebbp-201;Crebbp-205,Crebbp;Crebbp,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,7,12914,ENSMUSG00000022521,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26196,cg27351043,-0.00000909,0.00000312,-2.909269439,0.003884699,loss,ns,0.00000726,0.00000531,1.368074456,0.172279574,pos,ns,0.00111699,0.001554481,0.718561339,0.472952475,pos,ns,0.325182497,-0.000102735,0.0000535,-1.921774815,0.055550611,neg,ns,0.925509176,Sox5,Sox5_Intron,6,144367610,144367659,144367610,144367611,50,-,CGACTCCTTAAAGAGCACCCTGATAATATGCAAGGCTAAAATGTCAGAAG,"Intron (Sox5-209/Sox5, intron 4 of 13)",6,143843739,144781977,938239,2,Sox5-209,414318,Sox5-209;Sox5-212,Sox5;Sox5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,71,20678,ENSMUSG00000041540,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27207,cg08044276,-0.0000254,0.0000196,-1.295019828,0.196277027,loss,ns,0.0000455,0.0000333,1.36802988,0.172293512,pos,ns,0.005852535,0.00974579,0.600519317,0.548598959,pos,ns,0.260745021,0.000289872,0.000335157,0.864883171,0.387771686,pos,ns,0.698604968,Top1,Top1_Intron,2,160579473,160579522,160579521,160579522,50,-,ATTTCAAATGGAAAATTAATGCTGAAAAATAGCCCTGAGCTCTCTTGTCG,"Intron (Gm14221-201/Gm14221-201, intron 1 of 2)",2,160645888,160722764,76877,1,Top1-201,-66415,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,8,21969,ENSMUSG00000070544,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
1954,cg02499249,-0.00000125,0.00000209,-0.597388026,0.550684441,loss,ns,-0.00000486,0.00000355,-1.367999955,0.172302869,neg,ns,-0.002064573,0.001039806,-1.985536045,0.047965647,neg,ns,1.319069696,-0.00000711,0.0000358,-0.198755847,0.842584024,neg,ns,0.042898165,Rarb,Rarb_fiveUTR,14,16575509,16575558,16575509,16575510,50,-,CGAGTGAACTTTCGGTGAACCCTACCCGGGCTGCTAACCTTCAAATGACC,Promoter (<=1kb),14,16430839,16575543,144705,2,Rarb-201,0,Rarb-201;Rarb-207;Rarb-202;Rarb-206;Rarb-203;Rarb-205;Rarb-204,Rarb;Rarb;Rarb;Rarb;Rarb;Rarb;Rarb,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,16,218772,ENSMUSG00000017491,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25101,cg23692214,0.0000838,0.0000163,5.138514448,0.000000491,gain,yes,-0.0000379,0.0000277,-1.36777281,0.172373909,neg,ns,0.021668528,0.008116315,2.669749607,0.007990851,pos,ns,2.097406959,-0.000550734,0.000279119,-1.973111218,0.049370948,neg,ns,0.350417837,Fgfr2,Fgfr2_Exon,7,132949904,132949953,132949952,132949953,50,-,TATTTGAACTGGCCAAGAGCAATCAGATGTACCCAGTGCTTATCCCAACG,"Exon (Zranb1-202/Zranb1, exon 2 of 10)",7,130162451,133123350,2960900,2,Fgfr2-217,173397,Fgfr2-217;Zranb1-202;Zranb1-205;Zranb1-201;Zranb1-204,Fgfr2;Zranb1;Zranb1;Zranb1;Zranb1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,79,14183,ENSMUSG00000030849,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3751,cg03619800,-0.00000399,0.00000143,-2.791123571,0.005578299,loss,ns,0.00000332,0.00000243,1.367765786,0.172376106,pos,ns,0.001341553,0.000711637,1.885164477,0.060342738,pos,ns,1.219374988,-0.0000475,0.0000245,-1.940581651,0.053215438,neg,ns,0.96380918,Tprg,Tprg_Intergenic_upstream,16,25255755,25255804,25255803,25255804,50,+,AGACTAAATGTAATTTGCAATCAAGCTTCTGTTAACATGGAAATGTACCG,Distal Intergenic,16,25286817,25422344,135528,1,Tprg-201,-31013,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,3,71338,ENSMUSG00000048399,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16673,cg01427367,-0.00000575,0.00000225,-2.555670517,0.011075279,loss,ns,-0.00000523,0.00000382,-1.367674639,0.172404619,neg,ns,-0.004752092,0.001119884,-4.243380197,0.0000291,neg,ns,4.535864823,0.000145026,0.0000385,3.765663532,0.000198714,pos,ns,0.952472691,Rtcb,Rtcb_Exon,10,85946212,85946261,85946260,85946261,50,+,AGCCTCTGCTTCCACTGTGGATCATCACACACACCTGTCCCTTATGGTCG,"Exon (Rtcb-201/Rtcb, exon 7 of 12)",10,85938637,85957823,19187,2,Rtcb-201,11562,Ascl4-201;Rtcb-201;Rtcb-202,Ascl4;Rtcb;Rtcb,17438;0;9518,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,28088,ENSMUSG00000001783,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13431,cg04906879,0.00000234,0.00000113,2.060808818,0.040155202,gain,ns,-0.00000263,0.00000193,-1.367637054,0.172416377,neg,ns,0.000128475,0.000564263,0.227687171,0.820039542,pos,ns,0.086165206,-0.0000102,0.0000194,-0.52471082,0.600159251,neg,ns,0.02905702,Sp5,Sp5_fiveUTR,2,70475068,70475117,70475116,70475117,50,+,TGGCGGCCCAGCAAAGTCCTTATCAAATTCTTGGAGGTGATCCTGAAGCG,Promoter (<=1kb),2,70474923,70477729,2807,1,Sp5-201,145,Sp5-201,Sp5,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,7,11,64406,ENSMUSG00000075304,mapped to different genes,2,70475116,70475442,327,*,327,36,0.691131499,0.930740038,0.110091743,2.76E-29,CpGisland,TRUE,U3,Pr-B
21614,cg15463769,0.0000322,0.00000512,6.277939837,1.16E-09,gain,yes,0.0000119,0.0000087,1.367445299,0.172476377,pos,ns,0.009624262,0.002549697,3.774669229,0.000191977,pos,ns,3.716751149,-0.0000686,0.0000877,-0.782282845,0.434645486,neg,ns,0.087780475,Ndufaf3,Ndufaf3_Exon,9,108568334,108568383,108568382,108568383,50,-,CCCAAAAGCAGCTGTTGTCTCCAGAGCATTCCAGCTGCGCTTGGATTTCG,Promoter (<=1kb),9,108565537,108567434,1898,2,Ndufaf3-201,-949,Dalrd3-201;Dalrd3-209;Dalrd3-206;Dalrd3-205;Dalrd3-208;Dalrd3-203;Dalrd3-207;Dalrd3-202;Dalrd3-204;Impdh2-201;Impdh2-202;Impdh2-207;Impdh2-208;Impdh2-203;Impdh2-206;Ndufaf3-201;Ndufaf3-203;Ndufaf3-202;Ndufaf3-204;Wdr6-201,Dalrd3;Dalrd3;Dalrd3;Dalrd3;Dalrd3;Dalrd3;Dalrd3;Dalrd3;Dalrd3;Impdh2;Impdh2;Impdh2;Impdh2;Impdh2;Impdh2;Ndufaf3;Ndufaf3;Ndufaf3;Ndufaf3;Wdr6,-1503;-1527;-1531;-2313;-2624;-2854;-3129;-3884;-4009;8048;7895;5199;5065;3134;3130;-900;-1617;-1424;-1404;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,66706,ENSMUSG00000070283,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
25333,cg15778145,0.000000626,0.00000381,0.164272048,0.86962404,gain,ns,0.00000885,0.00000647,1.367384371,0.172495444,pos,ns,0.003622335,0.001896929,1.909578798,0.057110338,pos,ns,1.243285268,-0.000122343,0.0000652,-1.875412226,0.061675832,neg,ns,0.916067222,Srrm1,Srrm1_Exon,4,135345384,135345433,135345384,135345385,50,-,CGCCAAGTCCCCTGTAGAGAAAGATGTTCCCTTGGCTTGCTTCCGACTCC,"Exon (Srrm1-212/Srrm1, exon 3 of 16)",4,135320484,135353321,32838,2,Srrm1-203,7888,Srrm1-203;Srrm1-202;Srrm1-208;Srrm1-201;Srrm1-212;Srrm1-204;Srrm1-214;Srrm1-205;Srrm1-207;Srrm1-209;Srrm1-206,Srrm1;Srrm1;Srrm1;Srrm1;Srrm1;Srrm1;Srrm1;Srrm1;Srrm1;Srrm1;Srrm1,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,8,51796,ENSMUSG00000028809,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15971,cg01359455,-0.00000146,0.00000446,-0.328003256,0.743130623,loss,ns,0.0000103,0.00000757,1.367341462,0.172508874,pos,ns,0.00717118,0.002217315,3.234172709,0.001351562,pos,ns,2.869164128,-0.000229943,0.0000763,-3.015519071,0.00277754,neg,ns,0.888018495,Tshz1,Tshz1_Intron,18,84073205,84073254,84073253,84073254,50,+,CTCTTTAGTCACCAATAGACATCAAAGGTAATAATTAAAGAAGACAGACG,"Intron (Tshz1-201/Tshz1, intron 1 of 1)",18,84011627,84086404,74778,2,Tshz1-201,13150,Tshz1-201;Tshz1-202;Tshz1-203;Tshz1-204,Tshz1;Tshz1;Tshz1;Tshz1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,18,110796,ENSMUSG00000046982,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23595,cg27361011,-0.0000144,0.00000698,-2.06219169,0.040022507,loss,ns,-0.0000162,0.0000119,-1.367320702,0.172515371,neg,ns,-0.005492224,0.003476498,-1.579815067,0.115169,neg,ns,0.938664406,-0.000103937,0.000119556,-0.869354962,0.385325605,neg,ns,0.731895595,Gm3508,Gm3508_Intergenic_downstream,1,119238685,119238734,119238685,119238686,50,+,CGGGAGGAAGTGTCACTGTCAATCAGGGCGCTGACCCATCTAATCCAGCC,Distal Intergenic,1,119241962,119242753,792,2,Gm3508-201,4019,Gm3508-201,Gm3508,4019,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,8,100041778,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11853,cg21555517,-4.32E-08,0.00000682,-0.006327326,0.994955628,loss,ns,-0.0000159,0.0000116,-1.367204501,0.172551744,neg,ns,0.000991694,0.003396742,0.291954459,0.770516726,pos,ns,0.11321793,-0.000120141,0.000116814,-1.02848253,0.3045247,neg,ns,0.82288175,Gm11591,Gm11591_Intergenic_downstream,1,61179660,61179709,61179660,61179661,50,+,CGTCCCTATTCAACAGAGGCTAGTAATTACCATAGCAACCGCAGCATGTG,Distal Intergenic,1,61196541,61197242,702,2,Gm11591-201,17533,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,3,100042566,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14044,cg27213004,-0.0000137,0.00000675,-2.025604644,0.043661718,loss,ns,0.0000157,0.0000115,1.367203393,0.172552091,pos,ns,-0.000478649,0.003358003,-0.142539763,0.886746272,neg,ns,0.052200629,-0.0000615,0.000115481,-0.532888092,0.594492837,neg,ns,0.498811519,Vil1,Vil1_Exon,1,74428201,74428250,74428201,74428202,50,+,CGAGCCCCCCACCTTCACAGGCTGGTTCCTGGCTTGGGATCCCTTCAAGT,"Exon (Vil1-201/Vil1, exon 17 of 20)",1,74409376,74435559,26184,1,Vil1-201,18825,Vil1-201;Vil1-204,Vil1;Vil1,0;4515,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,22349,ENSMUSG00000026175,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19927,cg13515661,0.0000102,0.00000526,1.943373998,0.05287585,gain,ns,0.0000122,0.00000893,1.36710529,0.172582803,pos,ns,0.000282687,0.002617244,0.108009498,0.914058031,pos,ns,0.039026231,0.0000847,0.00009,0.941210249,0.347329979,pos,ns,0.861687486,Ogt,Ogt_Exon,X,101654476,101654525,101654476,101654477,50,+,CGGTTGACTAGATGAGTAATCTGATTGACTGGCTCCCTCAGTCCTATTCT,"Exon (Ogt-204/Ogt, exon 4 of 4)",20,101640060,101682940,42881,1,Ogt-202,14416,Ogt-202;Ogt-206;Ogt-201;Ogt-205;Ogt-204;Ogt-207;Ogt-203,Ogt;Ogt;Ogt;Ogt;Ogt;Ogt;Ogt,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,32,33,108155,ENSMUSG00000034160,conserved gene and region,X,101654404,101654477,74,*,74,8,0.608108108,1.174603175,0.108108108,0.0000012,CpGisland,TRUE,U10,Tr-S
22323,cg06499652,-0.00000652,0.00000323,-2.019410593,0.044304821,loss,ns,-0.00000749,0.00000548,-1.367007825,0.17261332,neg,ns,-0.002430196,0.001606268,-1.512945613,0.131312266,neg,ns,0.881694703,-0.0000867,0.0000552,-1.569600186,0.117528267,neg,ns,0.033841777,Arntl,Arntl_fiveUTR,7,113207536,113207585,113207584,113207585,50,-,GAAAGTAGGTCAGGGACGGAGGTGCCTGTTTACCCGCGCCGGACTCACCG,Promoter (<=1kb),7,113207557,113314126,106570,1,Arntl-204,0,Arntl-201;Arntl-203;Arntl-204,Arntl;Arntl;Arntl,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,6,11865,ENSMUSG00000055116,conserved gene and region,7,113207255,113208466,1212,*,1212,121,0.691419142,0.844647948,0.099834984,1.89E-91,CpGisland,TRUE,U1,Pr-A
13635,cg20395917,0.0000126,0.00000599,2.096624042,0.036837021,gain,ns,0.0000139,0.0000102,1.366905471,0.172645372,pos,ns,0.005633933,0.002981106,1.889880136,0.059706786,pos,ns,1.223976306,-0.000174022,0.00010252,-1.697445842,0.090616009,neg,ns,0.151697128,Dlx2,Dlx2_Promoter,2,71548081,71548130,71548081,71548082,50,-,CGCCCAGGCGCCAGCCTCTGAAACCCCCCAAAAGAACAAAATAGTAATTA,Promoter (1-2kb),2,71543408,71546754,3347,2,Dlx2-201,-1376,Dlx2-201;Dlx2-202,Dlx2;Dlx2,0;-2131,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,8,13392,ENSMUSG00000023391,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
2739,cg08849105,0.00000595,0.000000899,6.61569257,1.62E-10,gain,yes,-0.00000209,0.00000153,-1.366781859,0.172684086,neg,ns,0.000567233,0.000447259,1.268242404,0.20566301,pos,ns,0.686843812,-0.00000848,0.0000154,-0.551425198,0.581739468,neg,ns,0.02924829,Klhl14,Klhl14_Exon,18,21652287,21652336,21652335,21652336,50,-,TCCACAGCAGGTTGAGGCCGTGCAGCAGGTTGTCGCTGTGGCTGGGGTCG,Promoter (<=1kb),18,21550377,21652368,101992,2,Klhl14-201,32,Klhl14-201;Klhl14-202,Klhl14;Klhl14,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,38,225266,ENSMUSG00000042514,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
2336,cg16788303,0.00000525,0.00000269,1.951903891,0.051849747,gain,ns,-0.00000625,0.00000457,-1.366634351,0.172730294,neg,ns,-0.00178392,0.001339861,-1.331421517,0.18402858,neg,ns,0.735114725,-0.0000388,0.0000461,-0.84260728,0.400097735,neg,ns,0.034504558,Meis1,Meis1_Promoter,11,19020477,19020526,19020525,19020526,50,+,CAGAAAACTCCCCCTGCGGTCGACTGGAAAATGAGCTCACCCAAATCTCG,Promoter (1-2kb),11,18879817,19018985,139169,2,Meis1-206,-1492,Meis1-206;Meis1-202;Meis1-209;Meis1-201;Meis1-208;Meis1-207;Meis1-204;Meis1-205,Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1,0;0;0;0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,8,88,17268,ENSMUSG00000020160,conserved gene but different region,11,19020431,19020675,245,*,245,17,0.587755102,0.809052059,0.069387755,1.25E-10,CpGisland,TRUE,U2,Pr-W
27270,cg26325490,-0.00000506,0.00000193,-2.625050331,0.009093074,loss,ns,-0.00000448,0.00000327,-1.366596792,0.172742061,neg,ns,0.002881226,0.00095938,3.003217196,0.002888958,pos,ns,2.539258721,-0.000122723,0.000033,-3.719677577,0.000236741,neg,ns,0.942592868,Prrc2c,Prrc2c_Exon,1,162724762,162724811,162724810,162724811,50,+,TGCATACTTTTTCCCATCCTTTGCTTTTGTGCTCTGGCCTGACTTCTCCG,"Exon (Prrc2c-202/Prrc2c, exon 2 of 35)",1,162670725,162740525,69801,2,Prrc2c-202,15714,Prrc2c-202;Prrc2c-210;Prrc2c-209;Prrc2c-201;Prrc2c-211;Prrc2c-203;Prrc2c-205;Prrc2c-204;Prrc2c-214,Prrc2c;Prrc2c;Prrc2c;Prrc2c;Prrc2c;Prrc2c;Prrc2c;Prrc2c;Prrc2c,0;0;0;0;0;0;0;0;5910,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,7,226562,ENSMUSG00000040225,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23782,cg00593862,0.0000404,0.00000814,4.964736039,0.00000114,gain,yes,-0.0000189,0.0000138,-1.366383789,0.172808804,neg,ns,0.005112612,0.004049923,1.262397286,0.20775471,pos,ns,0.682449121,-0.000238818,0.000139277,-1.714703553,0.087398986,neg,ns,0.689564046,Lhx5,Lhx5_Intergenic_upstream,5,120366219,120366268,120366267,120366268,50,+,GGCCCAGGGTCCCATAATCCTTTGGTGCTAATTCAAGTGGTGGCCGGCCG,Distal Intergenic,5,120431699,120441223,9525,1,Lhx5-201,-65431,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,14,16873,ENSMUSG00000029595,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2976,cg22837698,0.0000224,0.00000606,3.702294959,0.000252826,gain,ns,-0.0000141,0.0000103,-1.366280639,0.172841133,neg,ns,0.005827327,0.003015471,1.932476653,0.054211503,pos,ns,1.265908556,-0.000119066,0.000103702,-1.148157839,0.251788629,neg,ns,0.85784419,Lrmda,Lrmda_Intron,14,22198863,22198912,22198911,22198912,50,-,ATTGATAAATTAATTGGTCCTTCTCACAGCTCAGAGAGCAAACTTGGCCG,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,179151,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206,Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26991,cg05209020,0.0000477,0.0000197,2.421969842,0.016009969,gain,ns,-0.0000457,0.0000335,-1.365966657,0.172939567,neg,ns,0.013817099,0.009801698,1.409663795,0.159641408,pos,ns,0.79685445,-0.000207201,0.00033708,-0.614694591,0.53920734,neg,ns,0.285411767,Uqcc1,Uqcc1_Intron,2,155873156,155873205,155873204,155873205,50,-,TTACATGTAAAATAAACAATGCCAGACTGTGAAAACTCTTGGCTGCAACG,"Intron (Uqcc1-207/Uqcc1, intron 7 of 9)",2,155846894,155930060,83167,2,Uqcc1-207,56855,Uqcc1-207;Uqcc1-214;Uqcc1-212;Uqcc1-203;Uqcc1-204;Uqcc1-213;Uqcc1-201;Uqcc1-202;Uqcc1-208;Uqcc1-205;Uqcc1-206;Uqcc1-209;Uqcc1-211,Uqcc1;Uqcc1;Uqcc1;Uqcc1;Uqcc1;Uqcc1;Uqcc1;Uqcc1;Uqcc1;Uqcc1;Uqcc1;Uqcc1;Uqcc1,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,56046,ENSMUSG00000005882,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24609,cg17771464,0.0000123,0.00000782,1.566786627,0.118184748,gain,ns,0.0000182,0.0000133,1.365904448,0.172959075,pos,ns,0.004690131,0.003893302,1.204666767,0.229250857,pos,ns,0.639689033,-0.000235199,0.00013389,-1.75665644,0.079963678,neg,ns,0.873809878,Dlgap3,Dlgap3_fiveUTR,4,127194601,127194650,127194649,127194650,50,+,TTTGCTGAGGCCATGAGGGGTTACCATGGCGACCGAGGCAGCCATCCCCG,Promoter (<=1kb),4,127194613,127236368,41756,1,Dlgap3-202,0,Dlgap3-201;Dlgap3-203;Dlgap3-202,Dlgap3;Dlgap3;Dlgap3,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,7,242667,ENSMUSG00000042388,conserved gene but different region,4,127194630,127194762,133,*,133,9,0.69924812,0.572727273,0.067669173,0.00000959,CpGisland,TRUE,U15,NS
9276,cg10707619,-0.0000106,0.00000592,-1.785412407,0.075171973,loss,ns,-0.0000137,0.0000101,-1.365904212,0.172959149,neg,ns,-0.005116249,0.002944564,-1.737523466,0.083287949,neg,ns,1.079417833,0.000148971,0.000101263,1.471124422,0.142271807,pos,ns,0.79302756,Foxp4,Foxp4_Intron,17,47877499,47877548,47877499,47877500,50,+,CGAAGCGTGAAAACAATTTGTTTGACCCTGATGCTGCAAGGGTCTGGGAG,"Intron (Foxp4-204/Foxp4, intron 8 of 16)",17,47867133,47924645,57513,2,Foxp4-204,47097,Foxp4-204;Foxp4-203;Foxp4-201;Foxp4-202;Foxp4-205;Foxp4-208;Foxp4-206,Foxp4;Foxp4;Foxp4;Foxp4;Foxp4;Foxp4;Foxp4,0;0;0;0;10885;1405;10602,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,25,74123,ENSMUSG00000023991,conserved gene and region,17,47877499,47877685,187,*,187,11,0.620320856,0.613114754,0.058823529,0.00000245,CpGisland,TRUE,U12,Tr-I
26205,cg07698120,0.0000274,0.0000254,1.07734535,0.282163653,gain,ns,-0.000059,0.0000432,-1.365796404,0.172992959,neg,ns,-0.010863414,0.01266389,-0.857826034,0.391651252,neg,ns,0.407100481,0.000508791,0.00043551,1.168263751,0.243598055,pos,ns,0.199327827,Gm5857,Gm5857_Intergenic_downstream,3,144411795,144411844,144411795,144411796,50,-,CGTTTAGATGAGTTAAGTGTAAATCAATCAGAAACATATGGACTACATTT,Distal Intergenic,3,144427180,144427672,493,2,Gm5857-201,15877,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,9,545572,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9741,cg02121891,-0.00000234,0.00000173,-1.357759803,0.175527396,loss,ns,0.000004,0.00000293,1.365717142,0.173017821,pos,ns,0.001798679,0.000858998,2.093928482,0.037078321,pos,ns,1.430879945,-0.0000185,0.0000295,-0.627392198,0.530864011,neg,ns,0.060361242,Bbx,Bbx_Promoter,16,50432401,50432450,50432449,50432450,50,-,AAAACACTCATTTTATATAAGGCAGCCTGCCATTGGCCCGCGCAGTGACG,Promoter (<=1kb),16,50191844,50432390,240547,2,Bbx-208,-60,Bbx-208;Bbx-201;Bbx-203;Bbx-202;Bbx-204;Bbx-207;Bbx-209;Bbx-206,Bbx;Bbx;Bbx;Bbx;Bbx;Bbx;Bbx;Bbx,0;0;0;0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,10,70508,ENSMUSG00000022641,conserved gene and region,16,50432439,50432497,59,*,59,10,0.694915254,1.404761905,0.169491525,2.24E-10,CpGisland,TRUE,NA,NRS
2536,cg22486471,-0.0000021,0.00000561,-0.374200639,0.708510869,loss,ns,-0.000013,0.00000954,-1.365688262,0.17302688,neg,ns,-0.003139413,0.002793964,-1.1236412,0.262034655,neg,ns,0.581641268,-0.0000621,0.0000961,-0.645836389,0.518863088,neg,ns,0.864169558,Abcc5,Abcc5_threeUTR,16,20392637,20392686,20392685,20392686,50,+,GCCCCTGGAAGCCCTCTTGTCTTTTTTCATTTTGGGGGTCAGCTTGGGCG,3' UTR,16,20331303,20426394,95092,2,Abcc5-202,33708,Abcc5-202;Abcc5-204;Abcc5-211;Abcc5-213;Abcc5-201,Abcc5;Abcc5;Abcc5;Abcc5;Abcc5,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,6,27416,ENSMUSG00000022822,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19667,cg04064013,0.0000154,0.00000596,2.575041523,0.010486276,gain,ns,-0.0000138,0.0000101,-1.36567279,0.173031733,neg,ns,0.008819297,0.002967708,2.971753206,0.003192834,pos,ns,2.49582361,-0.0000728,0.000102059,-0.713273456,0.476213157,neg,ns,0.910928322,Ttc7b,Ttc7b_Exon,12,100446879,100446928,100446927,100446928,50,+,CATGGGCTCTCTGAAGTCCTGTTTCTAGGAAAAAACCTAGTTCTTGATCG,"Exon (Ttc7b-201/Ttc7b, exon 5 of 20)",12,100300770,100520826,220057,2,Ttc7b-201,73898,Ttc7b-201;Ttc7b-206;Ttc7b-210;Ttc7b-209;Ttc7b-205,Ttc7b;Ttc7b;Ttc7b;Ttc7b;Ttc7b,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,104718,ENSMUSG00000033530,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12398,cg14494918,0.0000252,0.00000334,7.562744352,4.51E-13,gain,yes,-0.00000774,0.00000567,-1.365494653,0.173087621,neg,ns,0.007256375,0.001660154,4.370905486,0.0000169,pos,ns,4.771962069,-0.000233398,0.0000571,-4.088059994,0.0000555,neg,ns,0.055796872,Fign,Fign_Promoter,2,64097164,64097213,64097212,64097213,50,+,CAAGTCCATGTCAATTTCACTCACTCCCATTGAAACTAACAAGAGCTCCG,Promoter (<=1kb),2,63971507,64098012,126506,2,Fign-203,799,Fign-203;Fign-201;Fign-202;Fign-204,Fign;Fign;Fign;Fign,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,12,84,60344,ENSMUSG00000075324,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
2331,cg18902392,0.0000017,0.00000175,0.967356889,0.334119732,gain,ns,-0.00000407,0.00000298,-1.365323748,0.173141252,neg,ns,0.000128628,0.000872504,0.147423419,0.882893657,pos,ns,0.054091603,-0.0000274,0.00003,-0.911792094,0.362586661,neg,ns,0.021510363,Meis1,Meis1_fiveUTR,11,19018954,19019003,19019002,19019003,50,+,TTCCGACCAGAATGCTAGAACCCGGAAGTAGTGGTGGCCATAACAGGTCG,Promoter (<=1kb),11,18879817,19018985,139169,2,Meis1-206,0,Meis1-206;Meis1-202;Meis1-209;Meis1-201;Meis1-208;Meis1-207;Meis1-204;Meis1-205,Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,7,88,17268,ENSMUSG00000020160,conserved gene but different region,11,19018885,19019116,232,*,232,18,0.590517241,0.911392405,0.077586207,4.67E-12,CpGisland,TRUE,U1,Pr-A
8857,cg14842184,0.00000808,0.00000259,3.114035294,0.002017785,gain,ns,-0.00000601,0.00000441,-1.36526036,0.173161147,neg,ns,0.0000106,0.001290616,0.008207442,0.993456761,pos,ns,0.00285103,-0.000052,0.0000444,-1.170742237,0.242601565,neg,ns,0.913082195,Pprc1,Pprc1_Exon,19,46062178,46062227,46062178,46062179,50,-,CGCTGCTCACGGCTCTGACGGAGATCTTGGACAATGCAGATTCTGAGAAC,"Exon (Pprc1-207/Pprc1, exon 3 of 3)",19,46044886,46062197,17312,1,Pprc1-207,17292,Pprc1-207;Pprc1-203;Pprc1-202;Pprc1-201;Pprc1-205;Pprc1-208;Pprc1-211;Pprc1-204;Pprc1-210,Pprc1;Pprc1;Pprc1;Pprc1;Pprc1;Pprc1;Pprc1;Pprc1;Pprc1,0;0;0;0;5346;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,226169,ENSMUSG00000055491,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9500,cg09556622,-0.00000146,0.00000145,-1.011578274,0.312528631,loss,ns,0.00000335,0.00000246,1.365236033,0.173168782,pos,ns,0.000273099,0.00071924,0.379705382,0.704424112,pos,ns,0.152165787,0.00000425,0.0000247,0.17178919,0.863715352,pos,ns,0.966660959,Htr3b,Htr3b_Intron,9,48941759,48941808,48941807,48941808,50,-,AATTGCCTCCTTGATGGTAGACCCCACCAGTACTCAGTTTTGCATGACCG,"Intron (Htr3b-201/Htr3b, intron 6 of 8)",9,48935008,48964990,29983,2,Htr3b-201,23182,Htr3b-201,Htr3b,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,57014,ENSMUSG00000008590,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14390,cg06774176,-0.0000159,0.00000813,-1.952006571,0.051837498,loss,ns,0.0000189,0.0000138,1.365212892,0.173176046,pos,ns,0.007475974,0.004048399,1.846649634,0.065750914,pos,ns,1.182098206,-0.00063371,0.000139224,-4.551727922,0.00000765,neg,ns,0.577497005,Gmppa,Gmppa_Intergenic_downstream,1,75444436,75444485,75444484,75444485,50,-,CAGCAAAACACCGTGAAATCCAATAAGTCTGTGTCAGGCCCTGGCCCCCG,Downstream (1-2kb),1,75442224,75443179,956,1,Gmppa-203,2261,Gmppa-201;Gmppa-202;Gmppa-210;Gmppa-206;Gmppa-211;Gmppa-204;Gmppa-213;Gmppa-205;Gmppa-207;Gmppa-203,Gmppa;Gmppa;Gmppa;Gmppa;Gmppa;Gmppa;Gmppa;Gmppa;Gmppa;Gmppa,8506;8493;8469;8468;8454;8349;7494;2816;2270;2212,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,2,2,69080,ENSMUSG00000033021,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7161,cg14956276,-0.0000207,0.00000749,-2.766760353,0.006001624,loss,ns,0.0000174,0.0000127,1.365153639,0.173194646,pos,ns,0.008415745,0.003727664,2.257646029,0.024663187,pos,ns,1.607950799,-0.000432568,0.000128194,-3.374319535,0.000834022,neg,ns,0.642769787,Lcor,Lcor_fiveUTR,19,41545956,41546005,41545956,41545957,50,-,CGATTCGAGAGACAAGCAGAAGAATTCCTCAATGCAGTCTTTTATAGAAA,5' UTR,19,41482637,41562261,79625,1,Lcor-201,63319,Lcor-201;Lcor-204;Lcor-206;Lcor-202;Lcor-205,Lcor;Lcor;Lcor;Lcor;Lcor,0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,25,212391,ENSMUSG00000025019,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18022,cg20254607,-0.00000281,0.00000178,-1.579041466,0.115346353,loss,ns,0.00000413,0.00000302,1.364998675,0.173243297,pos,ns,0.000253009,0.000885809,0.285624411,0.775356558,pos,ns,0.110498536,0.00000895,0.0000305,0.293636568,0.769232118,pos,ns,0.961149155,Pola1,Pola1_Intron,X,93310686,93310735,93310686,93310687,50,-,CGAGCATAATTGCAGAGAATGAATAATTGATTTGACAATTGTACCAGTGG,"Intron (Pola1-201/Pola1, intron 36 of 36)",20,93304767,93632155,327389,2,Pola1-201,321420,Pola1-201,Pola1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,59,62,18968,ENSMUSG00000006678,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25476,cg12728908,0.000031,0.0000103,3.014681853,0.002784996,gain,ns,0.0000239,0.0000175,1.364975694,0.173250513,pos,ns,0.025005291,0.005119951,4.883892989,0.00000167,pos,ns,5.777485887,-0.000726954,0.000176075,-4.128667064,0.000047,neg,ns,0.488573318,Gm9347,Gm9347_Intergenic_downstream,7,136825970,136826019,136826018,136826019,50,+,GGACTAGTGAATTCACTTTTACAGTTAGGCAAGCTGAATGCTATTACCCG,Distal Intergenic,7,136810909,136812515,1607,1,Gm9347-201,15061,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,4,668771,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13221,cg24052926,-0.0000336,0.00000636,-5.285291194,0.000000237,loss,yes,0.0000148,0.0000108,1.364841953,0.17329251,pos,ns,-0.006645045,0.003166426,-2.098594572,0.036661475,neg,ns,1.435790061,0.000189107,0.000108893,1.736631719,0.083445589,pos,ns,0.814279963,Fgf11,Fgf11_Exon,11,69799737,69799786,69799737,69799738,50,+,CGGCAGAACAGTTTGGTGACGATGCCTTTGAGCTGAGGCTCTGGAGAGAG,"Exon (Fgf11-201/Fgf11, exon 2 of 6)",11,69796068,69801716,5649,2,Fgf11-201,1930,Chrnb1-201;Chrnb1-203;Fgf11-201;Fgf11-202;Tmem102-201,Chrnb1;Chrnb1;Fgf11;Fgf11;Tmem102,-3794;-3832;0;0;5838,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,14166,ENSMUSG00000042826,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26315,cg19666739,-0.000024,0.0000091,-2.63666014,0.008794395,loss,ns,0.0000211,0.0000155,1.364815997,0.173300662,pos,ns,0.001540294,0.00452865,0.340122134,0.7339949,pos,ns,0.134306958,-0.000128033,0.00015574,-0.822095682,0.411654294,neg,ns,0.665156964,Gm14111,Gm14111_Intergenic_downstream,2,146710613,146710662,146710661,146710662,50,+,AATTTCAAGCAAACTCTTCAAATGGGTTGTCATTAATTTGCCTTCTGCCG,Distal Intergenic,2,146754707,146755705,999,2,Gm14111-201,45043,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,15,17,668918,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17170,cg16228386,-0.00000189,0.00000922,-0.205352378,0.837431602,loss,ns,-0.0000214,0.0000157,-1.364770041,0.173315095,neg,ns,-0.007171095,0.004588748,-1.562756226,0.119130183,neg,ns,0.923978191,-0.000159863,0.000157807,-1.013031172,0.311835283,neg,ns,0.853108961,Sall1,Sall1_Exon,8,89029992,89030041,89030040,89030041,50,+,AAAGGGTTTCTCTCCAGTGTGAGTTCTCTCGTGAATCTGCAGGGCACTCG,"Exon (Sall1-201/Sall1, exon 3 of 4)",8,89027235,89044162,16928,2,Sall1-201,14121,Sall1-201,Sall1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,15,58198,ENSMUSG00000031665,conserved gene and region,8,89030021,89030318,298,*,298,14,0.553691275,0.66709306,0.046979866,0.000000954,CpGisland,TRUE,U11,Tr-P
6105,cg14928175,-0.0000427,0.0000113,-3.762302016,0.000201286,loss,ns,0.0000263,0.0000193,1.364643087,0.173354973,pos,ns,-0.008213162,0.005644324,-1.455118949,0.146648181,neg,ns,0.833723321,-0.0000464,0.000194108,-0.238859647,0.811372246,neg,ns,0.752044728,Tenm2,Tenm2_Intron,11,36068882,36068931,36068930,36068931,50,+,GTAAATAAGAACAGCAGGCTTTATTGCTAGCTGCATGCAAGGAGGCCACG,"Intron (Tenm2-202/Tenm2, intron 18 of 30)",11,36006656,37235882,1229227,2,Tenm2-202,1166951,Tenm2-202;Tenm2-208;Tenm2-201,Tenm2;Tenm2;Tenm2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,47,84,23964,ENSMUSG00000049336,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6030,cg03635671,0.0000482,0.00000791,6.097118229,3.21E-09,gain,yes,-0.0000183,0.0000134,-1.364590667,0.17337144,neg,ns,0.001033102,0.00393559,0.262502329,0.793108549,pos,ns,0.100667369,0.000120503,0.000135345,0.890341133,0.373973185,pos,ns,0.211608216,Cxxc5,Cxxc5_Intron,18,35873502,35873551,35873502,35873503,50,+,CGCATTCCTGGCTGGCAGGGCGGCCGGCACTAATGTCTTTCCCACATGGC,"Intron (Gm50399-201/Gm50399-201, intron 1 of 1)",18,35854738,35858619,3882,1,Cxxc5-205,18764,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,49,67393,ENSMUSG00000046668,conserved gene and region,18,35873225,35873734,510,*,510,45,0.698039216,0.729520964,0.088235294,7.14E-32,CpGisland,TRUE,U6,En-Sp
13173,cg18554004,-0.00000247,0.00000159,-1.554702214,0.121037296,loss,ns,0.00000369,0.0000027,1.364498563,0.173400377,pos,ns,0.001005383,0.000792125,1.26922296,0.205313626,pos,ns,0.687582228,-0.0000155,0.0000272,-0.57051609,0.568740998,neg,ns,0.048226105,Fxr2,Fxr2_Exon,11,69633324,69633373,69633372,69633373,50,-,GGCCTGGCCTCTGGGGGGGATGTGGAGCCGGGACTGCCCGTCGAGGTGCG,Promoter (<=1kb),11,69632990,69653297,20308,1,Fxr2-201,334,Fxr2-201;Gm12308-201;Gm12309-201,Fxr2;Gm12308;Gm12309,0;-2012;-1621,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,23879,ENSMUSG00000018765,mapped to different genes,11,69632776,69633585,810,*,810,96,0.734567901,0.88671973,0.118518519,1.22E-80,CpGisland,TRUE,U1,Pr-A
17965,cg23095099,-0.00000619,0.00000331,-1.871945519,0.06215558,loss,ns,-0.00000767,0.00000562,-1.36430108,0.173462434,neg,ns,-0.000460502,0.001646664,-0.279657323,0.779926924,neg,ns,0.107946087,0.0000299,0.0000566,0.527986383,0.597886512,pos,ns,0.936263198,Rnpepl1,Rnpepl1_Exon,1,92919804,92919853,92919804,92919805,50,+,CGAGGCCCCCAGCAGTGCCATCTCTCTCAGGGACGTCAATGTGTCTGCCT,"Exon (Rnpepl1-201/Rnpepl1, exon 11 of 11)",1,92910783,92920841,10059,1,Rnpepl1-201,9021,Rnpepl1-201;Rnpepl1-210;Rnpepl1-202;Rnpepl1-211;Rnpepl1-206;Rnpepl1-207;Rnpepl1-204;Rnpepl1-203;Rnpepl1-209;Rnpepl1-205;Rnpepl1-208,Rnpepl1;Rnpepl1;Rnpepl1;Rnpepl1;Rnpepl1;Rnpepl1;Rnpepl1;Rnpepl1;Rnpepl1;Rnpepl1;Rnpepl1,0;0;0;8595;0;0;2999;2792;2657;2388;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,108657,ENSMUSG00000026269,conserved gene and region,1,92919719,92919958,240,*,240,16,0.65,0.637873754,0.066666667,8.97E-10,CpGisland,TRUE,U10,Tr-S
4661,cg22656844,0.000119682,0.000012,9.998128921,1.39E-20,gain,yes,-0.0000277,0.0000203,-1.364274776,0.173470701,neg,ns,-0.008634876,0.005957813,-1.449336518,0.148254468,neg,ns,0.828992208,-0.000164683,0.000204889,-0.803766325,0.422147836,neg,ns,0.362859476,Hes1,Hes1_Intergenic_downstream,16,30068396,30068445,30068396,30068397,50,+,CGACCCCTTCGCTTGGTCATGCCCCATTTCCAGGCAAGATGTGGGCTCCA,Distal Intergenic,16,30066338,30067319,982,1,Hes1-204,2058,Hes1-202;Hes1-201;Hes1-203;Hes1-204,Hes1;Hes1;Hes1;Hes1,0;0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,20,15205,ENSMUSG00000022528,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
20635,cg00095474,-0.0000229,0.00000743,-3.082479032,0.002237259,loss,ns,-0.0000172,0.0000126,-1.364243071,0.173480666,neg,ns,0.000352049,0.003697732,0.09520682,0.924212065,pos,ns,0.034228366,-0.000268855,0.000127165,-2.114230881,0.035293727,neg,ns,0.897437853,Pou4f1,Pou4f1_Intergenic_downstream,14,104208419,104208468,104208467,104208468,50,+,AATTAAAAATTCAAACCTTGTGTATATTTGAAAGCATGAATCTTAGCTCG,Distal Intergenic,14,104463973,104465365,1393,2,Pou4f1-202,256897,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,31,18996,ENSMUSG00000048349,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20820,cg23505231,-0.0000267,0.00000835,-3.195242722,0.00154102,loss,ns,0.0000194,0.0000142,1.364147316,0.173510764,pos,ns,-0.009579359,0.004156849,-2.304476323,0.021856632,neg,ns,1.660416754,0.0000391,0.000142954,0.273825439,0.784401131,pos,ns,0.685511863,Kcnd3,Kcnd3_Intron,3,105538613,105538662,105538613,105538614,50,+,CGCAGTTTCTAAATCAGTCATTTGGGCTGGTTTAGCATGAAAGGCTCTGA,"Intron (Kcnd3-202/Kcnd3, intron 2 of 6)",3,105452330,105674002,221673,1,Kcnd3-202,86283,Kcnd3-202;Kcnd3-204;Kcnd3-203;Kcnd3-201,Kcnd3;Kcnd3;Kcnd3;Kcnd3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,9,56543,ENSMUSG00000040896,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12996,cg13835154,-0.000000367,0.00000274,-0.13377101,0.893670452,loss,ns,0.00000636,0.00000466,1.364134487,0.173514797,pos,ns,0.006134639,0.001365864,4.491396903,0.00001,pos,ns,5.000159007,-0.000183915,0.000047,-3.915410779,0.00011102,neg,ns,0.91544774,Khdrbs3,Khdrbs3_threeUTR,15,69093973,69094022,69094021,69094022,50,-,ACTAATTGAGGTCGCACTCGCCAAGGCTGAGGATGTGTAACCCTTAAACG,3' UTR,15,68928432,69101211,172780,1,Khdrbs3-204,165541,Khdrbs3-201;Khdrbs3-204;Khdrbs3-206;Khdrbs3-202,Khdrbs3;Khdrbs3;Khdrbs3;Khdrbs3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,5,13992,ENSMUSG00000022332,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11303,cg14109584,-0.00000138,0.00000301,-0.459325272,0.646322525,loss,ns,-0.00000697,0.00000511,-1.3640665,0.17353617,neg,ns,-0.001002823,0.001497718,-0.669567087,0.503632189,neg,ns,0.29788652,0.0000157,0.0000515,0.305338093,0.760313583,pos,ns,0.927774171,Gm13531,Gm13531_Intergenic_upstream,2,57517960,57518009,57517960,57517961,50,+,CGCCATGCCATCTGCATGTTCAGTAGGAAACGGTACACGTTAAATGGTGA,Distal Intergenic,2,57425167,57425709,543,2,Gm13531-201,-92251,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,10,271788,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10020,cg26441980,0.0000404,0.00000902,4.479806112,0.0000105,gain,ns,-0.0000209,0.0000153,-1.364029866,0.173547687,neg,ns,0.030870588,0.004490843,6.874118658,3.44E-11,pos,yes,10.46381304,-0.000712033,0.00015444,-4.610428974,0.00000588,neg,ns,0.228674227,Skap2,Skap2_Intron,6,51879277,51879326,51879277,51879278,50,+,CGACTGTCAGAGCCTGTGTCAAGTTGACCTTTTCAGAGATGTCTACATTG,"Intron (Skap2-205/Skap2, intron 10 of 12)",6,51857422,52012549,155128,2,Skap2-205,133223,Skap2-205;Skap2-201;Skap2-203;Skap2-204,Skap2;Skap2;Skap2;Skap2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,19,54353,ENSMUSG00000059182,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1103,cg23566030,-0.00000301,0.00000137,-2.192999695,0.02905008,loss,ns,-0.00000318,0.00000233,-1.364026048,0.173548888,neg,ns,0.0000505,0.00068403,0.073789269,0.941225655,pos,ns,0.026306244,0.0000062,0.0000235,0.263690415,0.792193678,pos,ns,0.967703119,Fsbp,Fsbp_Exon,4,11579872,11579921,11579920,11579921,50,-,GATATCATAGCAGTTAACTATAATGCAATTGGAGTAGACCGCCCTCCTCG,Promoter (<=1kb),4,11579665,11587591,7927,1,Fsbp-201,207,Fsbp-201;Rad54b-206;Rad54b-202;Rad54b-203;Rad54b-201;Rad54b-207,Fsbp;Rad54b;Rad54b;Rad54b;Rad54b;Rad54b,0;0;0;20923;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,100503583,ENSMUSG00000094595,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27343,cg19357997,-0.0000295,0.00000883,-3.335569597,0.000954684,loss,ns,0.0000205,0.000015,1.36399652,0.173558171,pos,ns,0.000245872,0.004396921,0.055919047,0.95544232,pos,ns,0.019795526,-0.000171682,0.00015121,-1.135388125,0.257089792,neg,ns,0.847289748,Glra2,Glra2_threeUTR,X,165129165,165129214,165129213,165129214,50,-,ACATGTAGCCAGAATTCAAACCACGTAGCTCTGGTACCAAAAAGGCAACG,3' UTR,20,165129017,165327393,198377,2,Glra2-201,198179,Glra2-201,Glra2,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,5,237213,ENSMUSG00000018589,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13116,cg09002189,-0.00000939,0.00000244,-3.843950423,0.000146907,loss,ns,0.00000566,0.00000415,1.363941668,0.173575418,pos,ns,0.0000412,0.0012154,0.033928794,0.972955767,pos,ns,0.011906903,-0.0000181,0.0000418,-0.432123078,0.66595238,neg,ns,0.95328767,Tcf4,Tcf4_Intron,18,69506508,69506557,69506556,69506557,50,-,GTCAGATATAATGGATTGTCCTGGAAGCAGATTTTTGCTTTGAGCACTCG,"Intron (Tcf4-259/Tcf4, intron 5 of 6)",18,69343356,69564082,220727,1,Tcf4-259,163152,Tcf4-259;Tcf4-201;Tcf4-207;Tcf4-210;Tcf4-240;Tcf4-254;Tcf4-246;Tcf4-206;Tcf4-202;Tcf4-257;Tcf4-232;Tcf4-248;Tcf4-231;Tcf4-205;Tcf4-253;Tcf4-233;Tcf4-238;Tcf4-245;Tcf4-249;Tcf4-219;Tcf4-235;Tcf4-227;Tcf4-250;Tcf4-229;Tcf4-260;Tcf4-226;Tcf4-216;Tcf4-256,Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,42,66,21413,ENSMUSG00000053477,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5306,cg04067698,0.000108095,0.0000185,5.827470091,1.41E-08,gain,yes,-0.000043,0.0000315,-1.363910657,0.173585169,neg,ns,0.034652706,0.009232116,3.753495564,0.000208173,pos,ns,3.681576133,-0.000795285,0.000317492,-2.504899039,0.012761544,neg,ns,0.512340377,Ranbp17,Ranbp17_Intron,11,33379459,33379508,33379459,33379460,50,+,CGTAAAAGGTTGAAGTCCTTAAGCAGCAAAAAACACCAACGTCCATCATC,"Intron (Ranbp17-202/Ranbp17, intron 14 of 27)",11,33211795,33513746,301952,2,Ranbp17-202,134238,Ranbp17-202;Ranbp17-206;Ranbp17-203,Ranbp17;Ranbp17;Ranbp17,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,31,66011,ENSMUSG00000040594,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2992,cg24460661,0.0000705,0.00000925,7.623344632,3.04E-13,gain,yes,0.0000214,0.0000157,1.363844115,0.173606094,pos,ns,0.017410704,0.004606026,3.779983977,0.000188103,pos,ns,3.72560536,-0.000398279,0.000158401,-2.514375608,0.012430462,neg,ns,0.460817934,Lrmda,Lrmda_Intron,14,22259440,22259489,22259440,22259441,50,+,CGATAGGAATCAGGTTGAGTATTAGTGTTTTTGCTGGTCTGTGCAATAGA,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,239728,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206,Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10095,cg06238780,0.000106855,0.000014,7.641429058,2.70E-13,gain,yes,-0.0000324,0.0000238,-1.363632384,0.173672688,neg,ns,0.01925047,0.006959775,2.76596163,0.006015982,pos,ns,2.220693442,-0.000568155,0.000239346,-2.37378058,0.018216079,neg,ns,0.298855673,Gm28308,Gm28308_threeUTR,6,52169415,52169464,52169463,52169464,50,+,AAAATATAAATAAATCTGACTGTTCACCAGCATACACACACGGAAAGACG,3' UTR,6,52163359,52213339,49981,2,Gm28308-201,43875,Gm28308-201;Hoxa2-201;Hoxa3-201;Hoxa3-202,Gm28308;Hoxa2;Hoxa3;Hoxa3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,103,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
10818,cg26092669,-0.000014,0.00000522,-2.67418266,0.007888373,loss,ns,-0.0000121,0.00000887,-1.363551414,0.17369816,neg,ns,-0.002069754,0.002599219,-0.796298588,0.426467882,neg,ns,0.37011367,-0.0000716,0.0000894,-0.800784878,0.423869488,neg,ns,0.800209167,Pck2,Pck2_Exon,14,55544483,55544532,55544483,55544484,50,+,CGGCTATGGTGGCAACTCCCTGCTGGGCAAGAAGTGCTTTGCCCTACGCA,"Exon (Pck2-201/Pck2, exon 5 of 10)",14,55540266,55550017,9752,1,Pck2-201,4217,Pck2-201;Pck2-207;Pck2-205;Pck2-206;Pck2-210;Pck2-209;Pck2-203;Pck2-211;Pck2-213;Pck2-208;Pck2-212;Pck2-202;Pck2-204,Pck2;Pck2;Pck2;Pck2;Pck2;Pck2;Pck2;Pck2;Pck2;Pck2;Pck2;Pck2;Pck2,0;0;0;4093;0;0;4016;0;2078;0;913;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,74551,ENSMUSG00000040618,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8047,cg12495249,0.0000202,0.0000026,7.779406037,1.09E-13,gain,yes,-0.00000603,0.00000442,-1.36353901,0.173702063,neg,ns,0.003526118,0.001294822,2.723245856,0.006830673,pos,ns,2.165536533,-0.0000467,0.0000445,-1.048875592,0.295052409,neg,ns,0.020803232,Pax5,Pax5_Exon,4,44703351,44703400,44703351,44703352,50,-,CGAGCTCGCCGCCTACTTACTATGCATGGATGCAAACGGGTCGTGCTTAC,"Exon (Pax5-208/Pax5, exon 1 of 5)",4,44524757,44710487,185731,2,Pax5-201,7087,Pax5-201;Pax5-202;Pax5-203;Pax5-204;Pax5-205;Pax5-207;Pax5-206;Pax5-209;Pax5-210;Pax5-212;Pax5-213;Pax5-214;Pax5-215;Pax5-208;Pax5-216;Pax5-217;Pax5-218;Pax5-219,Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,45,18507,ENSMUSG00000014030,conserved gene but different region,4,44703085,44703505,421,*,421,37,0.617577197,0.926154944,0.087885986,3.03E-26,CpGisland,TRUE,U3,Pr-B
15513,cg06733729,0.0000389,0.0000111,3.513521602,0.000508038,gain,ns,-0.0000256,0.0000188,-1.363530657,0.17370469,neg,ns,0.017279123,0.005506974,3.137679973,0.001866541,pos,ns,2.728962471,-0.000777712,0.000189384,-4.106526076,0.0000514,neg,ns,0.411449366,Gm7503,Gm7503_Intergenic_upstream,18,81471824,81471873,81471872,81471873,50,+,AATAACGAATTCAATAATAATTAACTCGGGTCATCTGCTCATCTGTCACG,Distal Intergenic,18,80997003,80997383,381,2,Gm7503-201,-474441,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,17,21,665124,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7273,cg08827873,-0.000027,0.0000119,-2.274501534,0.023618831,loss,ns,-0.0000275,0.0000202,-1.363527951,0.173705542,neg,ns,-0.000790347,0.005918807,-0.133531406,0.89385977,neg,ns,0.048730609,-0.000153644,0.000203547,-0.754830371,0.450923826,neg,ns,0.808757913,Lsamp,Lsamp_Intron,16,41923938,41923987,41923938,41923939,50,+,CGAATATTAATAGGGTTCATTTAAAACCAGGAGTGTTACTAATGCTTTTT,"Intron (Lsamp-206/Lsamp, intron 4 of 8)",16,39984371,42176295,2191925,1,Lsamp-206,1939567,Lsamp-206;Lsamp-201;Lsamp-202,Lsamp;Lsamp;Lsamp,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,23,268890,ENSMUSG00000061080,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21705,cg09005889,-0.00000355,0.00000202,-1.750686186,0.080989152,loss,ns,-0.00000469,0.00000344,-1.36338164,0.173751578,neg,ns,-0.001832419,0.00100786,-1.818127855,0.07000962,neg,ns,1.154842281,0.0000405,0.0000347,1.169271268,0.243192629,pos,ns,0.047632288,Prpf38b,Prpf38b_threeUTR,3,108910352,108910401,108910352,108910353,50,+,CGACCCTGGGCTGCTCCGAGCCTCGCTGCAAGACTGAGTCAATCCTGCTA,3' UTR,3,108902805,108911696,8892,2,Prpf38b-204,1295,Prpf38b-204;Prpf38b-201;Prpf38b-208;Prpf38b-202;Prpf38b-203;Prpf38b-206;Prpf38b-205;Prpf38b-207,Prpf38b;Prpf38b;Prpf38b;Prpf38b;Prpf38b;Prpf38b;Prpf38b;Prpf38b,0;0;0;-4767;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,13,66921,ENSMUSG00000027881,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
24944,cg14261997,0.00000389,0.00000214,1.814509061,0.070565868,gain,ns,-0.00000497,0.00000364,-1.363163314,0.173820289,neg,ns,-0.0000393,0.001067349,-0.0368326,0.970642187,neg,ns,0.012940837,-0.0000237,0.0000367,-0.646694513,0.518308188,neg,ns,0.945373434,Tpst1,Tpst1_Exon,5,130102201,130102250,130102249,130102250,50,+,TCTAGGTTATTCCCCAATGCCAAATTTCTCCTGATGGTCCGAGATGGCCG,"Exon (Tpst1-202/Tpst1, exon 2 of 6)",5,130073326,130135729,62404,1,Tpst1-202,28875,Tpst1-202;Tpst1-201;Tpst1-204,Tpst1;Tpst1;Tpst1,0;0;8612,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,22021,ENSMUSG00000034118,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27688,cg17133045,-0.00000368,0.00000332,-1.108784587,0.268382574,loss,ns,0.00000769,0.00000564,1.363030413,0.173862126,pos,ns,0.002343082,0.00165213,1.418218853,0.157131344,pos,ns,0.803737175,-0.000074,0.0000568,-1.301942484,0.193902618,neg,ns,0.932845162,Akt3,Akt3_Intron,1,177150961,177151010,177151009,177151010,50,-,ACACAGTAATTGTACCATATGGTGAGCATTTATCCTTTCTGAAATGCACG,"Intron (Akt3-201/Akt3, intron 1 of 12)",1,177020073,177248805,228733,2,Akt3-201,97795,Akt3-201;Akt3-203;Akt3-202,Akt3;Akt3;Akt3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,14,23797,ENSMUSG00000019699,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
202,cg07648871,0.000197775,0.0000169,11.68288561,2.24E-26,gain,yes,-0.0000392,0.0000288,-1.362959867,0.173884337,neg,ns,0.029804186,0.008425526,3.53736798,0.000465926,pos,ns,3.331683381,-0.000619778,0.000289753,-2.138985499,0.033217888,neg,ns,0.111180746,Fzd1,Fzd1_Exon,5,4756964,4757013,4757012,4757013,50,-,TCTGGCCACTGGAAGCCGAACTTGTTCATGAGCGCCTCGCAGCCCTGGCG,"Exon (Fzd1-201/Fzd1, exon 1 of 1)",5,4753839,4758035,4197,2,Fzd1-201,1022,Fzd1-201,Fzd1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,5,14362,ENSMUSG00000044674,conserved gene and region,5,4756896,4757110,215,*,215,22,0.655813954,0.952093398,0.102325581,2.61E-17,CpGisland,TRUE,U3,Pr-B
23935,cg07287694,-0.0000012,0.0000231,-0.05203272,0.958536134,loss,ns,0.0000535,0.0000392,1.362927458,0.173894541,pos,ns,0.08879443,0.011489758,7.728137423,1.53E-13,pos,yes,12.8151673,-0.002648254,0.000395132,-6.702204286,9.70E-11,neg,yes,0.673825081,Insig2,Insig2_Exon,1,121227181,121227230,121227229,121227230,50,-,GGTGCTTCTCTCTGGATTTTCACCTGCCTTGCCAAAAATGATTGATTACG,"Exon (Gm29359-201/Gm29359-201, exon 2 of 2)",1,121305893,121307318,1426,2,Insig2-206,80137,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,17,72999,ENSMUSG00000003721,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24358,cg27310594,0.0000503,0.00000876,5.737124476,2.29E-08,gain,yes,0.0000203,0.0000149,1.362917853,0.173897566,pos,ns,0.006219632,0.004362035,1.425855607,0.154916206,pos,ns,0.809903149,-0.0000254,0.00015001,-0.169305003,0.865667163,neg,ns,0.813139719,Gpr162,Gpr162_Exon,6,124861250,124861299,124861298,124861299,50,+,AGCTGACCATCCAGATGCCCATGACGGCATGCAGTGCCTGCTTCTTGGCG,"Exon (Gpr162-201/Gpr162, exon 2 of 5)",6,124858444,124863917,5474,2,Gpr162-201,2618,Cd4-201;Gpr162-201;Gpr162-202;Gpr162-204;Gpr162-203;P3h3-201;P3h3-204,Cd4;Gpr162;Gpr162;Gpr162;Gpr162;P3h3;P3h3,26922;0;0;0;2413;-3498;-3521,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,14788,ENSMUSG00000038390,conserved gene and region,6,124861154,124861518,365,*,365,23,0.6,0.714468085,0.063013699,2.79E-13,CpGisland,TRUE,U13,Hc-P
25280,cg02496796,0.0000686,0.0000122,5.61765372,4.31E-08,gain,yes,0.0000283,0.0000207,1.362914009,0.173898776,pos,ns,0.026615539,0.006074503,4.381516832,0.0000161,pos,ns,4.79185953,-0.000684402,0.000208902,-3.276191133,0.001171453,neg,ns,0.249019616,Gm43559,Gm43559_Intergenic_upstream,3,134302871,134302920,134302919,134302920,50,-,GCGCCTCATACATATTGATTTCTGACACCAAGCAGCAGTGAAAGCCCCCG,Distal Intergenic,3,134272045,134272510,466,2,Gm43559-201,-30410,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,7,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12247,cg00166579,0.000000484,0.000000931,0.520236268,0.603270233,gain,ns,0.00000216,0.00000158,1.36286074,0.17391555,pos,ns,0.001139512,0.000463365,2.459209428,0.014470327,pos,ns,1.839521644,-0.0000458,0.0000159,-2.873241083,0.004343319,neg,ns,0.01705389,Ptch1,Ptch1_Intron,13,63566170,63566219,63566170,63566171,50,+,CGGGCAGCGGCCGCAGCAGCTCCTTGATTCAATAGATGAGATGGAAGAAG,"Intron (Ptch1-204/Ptch1, intron 1 of 23)",13,63508329,63573460,65132,2,Ptch1-204,7241,Ptch1-201;Ptch1-204;Ptch1-206;Ptch1-202;Ptch1-207;Ptch1-203;Ptch1-205,Ptch1;Ptch1;Ptch1;Ptch1;Ptch1;Ptch1;Ptch1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,36,19206,ENSMUSG00000021466,conserved gene and region,13,63565382,63566182,801,*,801,117,0.755305868,1.02591133,0.146067416,1.25E-110,CpGisland,TRUE,U1,Pr-A
7300,cg07933335,-0.0000111,0.00000503,-2.200707272,0.028493864,loss,ns,-0.0000116,0.00000855,-1.362707594,0.17396378,neg,ns,-0.003083927,0.00250456,-1.231324833,0.219134701,neg,ns,0.659288845,-0.000127046,0.0000861,-1.47502378,0.141221026,neg,ns,0.937703801,Gm38274,Gm38274_Intergenic_downstream,3,42218849,42218898,42218849,42218850,50,+,CGATACTCTAAACAGGGAAGGTAAAAGAATGGTAATGAACTTTCAGAATA,Distal Intergenic,3,42362630,42362777,148,2,Gm38274-201,143879,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20543,cg05588506,0.0000402,0.00000801,5.020518667,0.000000871,gain,yes,-0.0000185,0.0000136,-1.362668057,0.173976233,neg,ns,-0.00853592,0.003988043,-2.140378369,0.033104274,neg,ns,1.480115937,0.00020013,0.000137148,1.459218437,0.145517521,pos,ns,0.659856201,Fam181a,Fam181a_Intron,12,103314853,103314902,103314853,103314854,50,+,CGCCTGATTGGGATGCTTTGTATCTGGAGAGGCGCTCCTGATTGGCCTGA,"Intron (Fam181a-203/Fam181a, intron 1 of 1)",12,103310975,103317065,6091,1,Fam181a-203,3878,Fam181a-203;Fam181a-202;Fam181a-201,Fam181a;Fam181a;Fam181a,0;-51;-57,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,9,100504156,ENSMUSG00000096753,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20393,cg00049718,0.000044,0.0000799,0.550136754,0.582621738,gain,ns,0.000185062,0.000135811,1.362639278,0.173985298,pos,ns,0.037346374,0.039788084,0.938632113,0.348650396,pos,ns,0.457609837,0.000838122,0.001368309,0.612524166,0.540640059,pos,ns,0.269295038,Csde1,Csde1_fiveUTR,3,103020607,103020656,103020655,103020656,50,-,ATTCCTACGTACCGGGCCGTGCTGCTTATGGCGGCGCTGGAGAGGGGGCG,Promoter (<=1kb),3,103020607,103057991,37385,1,Csde1-211,0,Csde1-201;Csde1-211;Csde1-207;Csde1-214;Csde1-215;Csde1-216;Csde1-206,Csde1;Csde1;Csde1;Csde1;Csde1;Csde1;Csde1,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,10,229663,ENSMUSG00000068823,conserved gene and region,3,103020325,103020745,421,*,421,40,0.60807601,1.028836755,0.095011877,9.73E-30,CpGisland,TRUE,U1,Pr-A
5552,cg17461673,-0.00000967,0.0000109,-0.883831997,0.377471838,loss,ns,0.0000253,0.0000186,1.362607317,0.173995365,pos,ns,0.005788471,0.005447074,1.062675382,0.288756308,pos,ns,0.539468519,-0.000109533,0.000187324,-0.584722752,0.559159468,neg,ns,0.623957778,Acta2,Acta2_Exon,19,34246087,34246136,34246087,34246088,50,-,CGAAGGAATAGCCACGCTCAGTCAGGATCTTCATGAGGTAGTCAGTGAGA,"Exon (Acta2-201/Acta2, exon 6 of 9)",19,34241090,34255590,14501,2,Acta2-201,9454,Acta2-201;Acta2-202,Acta2;Acta2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,11475,ENSMUSG00000035783,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13624,cg21530396,-0.00000281,0.00000757,-0.370970727,0.710912717,loss,ns,0.0000175,0.0000129,1.362507348,0.174026859,pos,ns,-0.00520763,0.003768185,-1.381999529,0.167966857,neg,ns,0.774776403,0.000102492,0.000129588,0.790908523,0.42960204,pos,ns,0.140198608,Dlx1,Dlx1_Intergenic_downstream,2,71537961,71538010,71538009,71538010,50,+,TATTAGCATAAATGTTTACTCTTCATTACGCTGATGACATTGTGCACTCG,Distal Intergenic,2,71530780,71532689,1910,1,Dlx1-206,7181,Dlx1-201;Dlx1-203,Dlx1;Dlx1,0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,36,13390,ENSMUSG00000041911,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
15473,cg16433156,0.0000161,0.00000483,3.332009195,0.00096655,gain,ns,0.0000112,0.00000821,1.36247786,0.174036149,pos,ns,0.005028454,0.002405872,2.09007582,0.037425548,pos,ns,1.42683183,-0.000103675,0.0000827,-1.253050555,0.211131625,neg,ns,0.035327202,Sall3,Sall3_fiveUTR,18,80986685,80986734,80986733,80986734,50,-,CTGAGCAATTAGGCTGGTGAATAATGCATGGCCATTAGCGGAGGGCCGCG,Promoter (<=1kb),18,80966376,80986771,20396,2,Sall3-201,37,Sall3-201;Sall3-203,Sall3;Sall3,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,10,20689,ENSMUSG00000024565,conserved gene but different region,18,80986723,80987780,1058,*,1058,149,0.748582231,1.019017453,0.140831758,7.28E-138,CpGisland,TRUE,U3,Pr-B
20462,cg19819497,0.000105334,0.00000849,12.40549239,5.74E-29,gain,yes,-0.0000196,0.0000144,-1.362134719,0.174144284,neg,ns,0.011913826,0.004226026,2.819156099,0.00512484,pos,ns,2.290319704,0.0000761,0.000145333,0.523626525,0.600912449,pos,ns,0.099541142,Hoxc4,Hoxc4_Intergenic_downstream,15,103061664,103061713,103061664,103061665,50,-,CGCCAGCCTCCGCAGCCGCCTTTGTACGCGTGATTTATGACTTCAGTCTT,Distal Intergenic,15,103034395,103036852,2458,1,Hoxc4-201,27318,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,32,91,15423,ENSMUSG00000075394,mapped to different genes,15,103061537,103061809,273,*,273,19,0.586080586,0.8125,0.06959707,7.69E-12,CpGisland,TRUE,U13,Hc-P
19391,cg08425439,-0.000000296,0.00000262,-0.112894182,0.91018752,loss,ns,0.00000607,0.00000445,1.362082314,0.174160804,pos,ns,0.002472057,0.001304658,1.894793473,0.059050128,pos,ns,1.228779159,-0.0000345,0.0000449,-0.769105181,0.442416449,neg,ns,0.962361941,Foxp1,Foxp1_Intron,6,99202783,99202832,99202831,99202832,50,-,AGCACTTTCAAATATACTTAACAAGCAAATTGAATGTCTTATTAAAATCG,"Intron (Foxp1-206/Foxp1, intron 2 of 17)",6,98925338,99266515,341178,2,Foxp1-206,63683,Foxp1-206;Foxp1-204;Foxp1-220;Foxp1-221;Foxp1-222;Foxp1-223;Foxp1-202;Foxp1-211;Foxp1-212;Foxp1-224,Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,87,108655,ENSMUSG00000030067,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
13753,cg07057943,-0.00000524,0.00000428,-1.226034839,0.221116085,loss,ns,0.0000099,0.00000727,1.36192221,0.174211279,pos,ns,0.003483494,0.002129182,1.636070946,0.10283957,pos,ns,0.987839749,-0.0000757,0.0000732,-1.034266816,0.301817599,neg,ns,0.901035351,Map3k20,Map3k20_Intron,2,72379302,72379351,72379350,72379351,50,+,GTTCGCTTCTTCATGCAGAGCCTTTCCATTTCAAAAGAACTTCAGTGGCG,"Intron (Map3k20-201/Map3k20, intron 8 of 19)",2,72285637,72442610,156974,1,Map3k20-201,93665,Map3k20-201;Map3k20-204;Map3k20-202;Map3k20-206,Map3k20;Map3k20;Map3k20;Map3k20,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,14,18,65964,ENSMUSG00000004085,mapped to different genes,2,72379242,72379383,142,*,142,11,0.563380282,0.991746032,0.077464789,0.00000016,CpGisland,TRUE,NA,NRS
24147,cg04147092,-0.00000245,0.00000212,-1.152786833,0.249886018,loss,ns,-0.00000491,0.0000036,-1.361860455,0.174230751,neg,ns,-0.000613214,0.001055874,-0.580764647,0.561821041,neg,ns,0.250402,-0.000000824,0.0000363,-0.022686931,0.981914597,neg,ns,0.013632917,Kdm2b,Kdm2b_fiveUTR,5,122989107,122989156,122989155,122989156,50,-,GGGAGGCGTCGACGTCATAATCCCCGGAACGTAAACATTGTTGCCGATCG,Promoter (<=1kb),5,122870679,122989306,118628,2,Kdm2b-204,150,Kdm2b-202;Kdm2b-204;Kdm2b-203;Kdm2b-207;Kdm2b-205;Kdm2b-206;Kdm2b-218;Kdm2b-210;Kdm2b-216,Kdm2b;Kdm2b;Kdm2b;Kdm2b;Kdm2b;Kdm2b;Kdm2b;Kdm2b;Kdm2b,0;0;0;0;0;0;-571;0;-4136,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,6,30841,ENSMUSG00000029475,conserved gene and region,5,122989113,122989403,291,*,291,31,0.666666667,1.010756303,0.10652921,8.44E-25,CpGisland,TRUE,U1,Pr-A
11065,cg19814455,0.00000428,0.00000573,0.746060662,0.456196133,gain,ns,0.0000133,0.00000974,1.361499554,0.17434458,pos,ns,-0.000563879,0.002852474,-0.197680572,0.843424549,neg,ns,0.073953763,-0.0000745,0.0000981,-0.759860201,0.447915623,neg,ns,0.878072369,Nkx2-1,Nkx2-1_Intergenic_downstream,12,56483702,56483751,56483750,56483751,50,-,ATATTTAAATACTGGAACCTGCATGAAATCCCACTTTGAGGTGGCAGCCG,Distal Intergenic,12,56531958,56535106,3149,2,Nkx2-1-202,51404,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,29,21869,ENSMUSG00000001496,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6806,cg00211803,-0.0000136,0.00000412,-3.298237805,0.001086124,loss,ns,-0.00000952,0.00000699,-1.361414401,0.174371446,neg,ns,-0.000195364,0.002048653,-0.095362021,0.924088894,neg,ns,0.034286249,-0.000142626,0.0000705,-2.024409066,0.043785229,neg,ns,0.957673774,Nek6,Nek6_Intron,2,38572079,38572128,38572127,38572128,50,-,AAGGGCATTAGTCAGTGCCATGGTCGGGCTGACAGGTGCGGTACCCAGCG,"Intron (Nek6-201/Nek6, intron 7 of 9)",2,38511643,38594606,82964,1,Nek6-201,60436,Nek6-201;Nek6-203;Nek6-202,Nek6;Nek6;Nek6,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,5,59126,ENSMUSG00000026749,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5523,cg23300839,-0.00000353,0.0000022,-1.603389698,0.109866981,loss,ns,0.00000509,0.00000374,1.361260987,0.174419855,pos,ns,0.003437955,0.001094528,3.14103885,0.001845926,pos,ns,2.733785828,-0.0000765,0.0000376,-2.031294387,0.043077973,neg,ns,0.956108447,Slc22a23,Slc22a23_threeUTR,13,34179661,34179710,34179709,34179710,50,+,TATTTCTGTACATTTACATACAAATTTTCCCCAAAGGTACAACAGATGCG,3' UTR,13,34179158,34344451,165294,2,Slc22a23-205,164741,Psmg4-201;Psmg4-202;Slc22a23-205;Slc22a23-201;Slc22a23-202,Psmg4;Psmg4;Slc22a23;Slc22a23;Slc22a23,16697;16697;0;0;13821,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,2,73102,ENSMUSG00000038267,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11982,cg13849080,-0.000011,0.00000266,-4.138696848,0.0000451,loss,ns,0.00000616,0.00000452,1.361220269,0.174432706,pos,ns,0.004477126,0.00132556,3.377535601,0.000824675,pos,ns,3.083717298,-0.0000392,0.0000456,-0.858965568,0.391023211,neg,ns,0.05629052,Ablim3,Ablim3_Exon,18,61911182,61911231,61911182,61911183,50,+,CGCCCCCACCCCTGTTCCCATGGCAAAGGAGAGGAGGATCCACTTACTGC,Promoter (<=1kb),18,61799392,61911823,112432,2,Ablim3-202,592,Ablim3-202;Ablim3-201,Ablim3;Ablim3,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,319713,ENSMUSG00000032735,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
6434,cg13204934,0.0000148,0.00000394,3.744984528,0.000215039,gain,ns,0.00000912,0.0000067,1.361213712,0.174434775,pos,ns,0.006064076,0.001961968,3.090813089,0.002177253,pos,ns,2.662091116,0.00000609,0.0000675,0.090254111,0.928143571,pos,ns,0.082966632,Grhl2,Grhl2_fiveUTR,15,37233373,37233422,37233421,37233422,50,-,TCATTGGATCAAACATGTCACAAGAGTCGGACAAGTAAGTGGATCACACG,Promoter (<=1kb),15,37233036,37333647,100612,1,Grhl2-203,337,Grhl2-203;Grhl2-201;Grhl2-204,Grhl2;Grhl2;Grhl2,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,6,8,252973,ENSMUSG00000022286,conserved gene and region,15,37233368,37233440,73,*,73,9,0.602739726,1.383157895,0.123287671,5.59E-08,CpGisland,TRUE,NA,NRS
26224,cg13588483,-0.00000944,0.00000979,-0.965053214,0.335270385,loss,ns,-0.0000226,0.0000166,-1.361111976,0.174466886,neg,ns,-0.017510352,0.0048708,-3.594964497,0.000377317,neg,ns,3.423293321,0.000328391,0.000167506,1.960465958,0.050836661,pos,ns,0.799862045,Sox5,Sox5_Intron,6,144611397,144611446,144611445,144611446,50,-,AGCTGCCTGCTCCTCGTCCTTCATTGTACCCTGTGTCTTAGCTGGGCACG,"Intron (Sox5-209/Sox5, intron 2 of 13)",6,143843739,144781977,938239,2,Sox5-209,170531,Sox5-209;Sox5-212,Sox5;Sox5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,71,20678,ENSMUSG00000041540,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9483,cg25475523,-0.00000625,0.00000266,-2.353206148,0.019236706,loss,ns,-0.00000614,0.00000451,-1.361063526,0.174482179,neg,ns,-0.000490009,0.001321774,-0.370720887,0.711098625,neg,ns,0.148070161,0.0000503,0.0000455,1.106838742,0.269221788,pos,ns,0.940985842,Tenm3,Tenm3_Intron,8,48861251,48861300,48861299,48861300,50,-,CAAAGCTGTAACAAACAATCGTAACCTTGCCAAGTTACCTAGGACAGGCG,"Intron (Gm19744-203/Gm19744-203, intron 1 of 2)",8,48646261,48843951,197691,2,Tenm3-207,-17349,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,39,23965,ENSMUSG00000031561,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3753,cg20348567,0.0000645,0.000017,3.782970656,0.000185958,gain,ns,-0.0000394,0.000029,-1.361013987,0.174497817,neg,ns,-0.019390421,0.008483627,-2.285628686,0.022950717,neg,ns,1.639203738,0.000203215,0.000291751,0.696536188,0.486615041,pos,ns,0.547339709,Cic,Cic_Intron,7,25280170,25280219,25280218,25280219,50,+,AAGCTAAGTATAGGGCTGGCCCAGCGCCCAGGGCAGGGGGGCCCTTCCCG,"Intron (Cic-212/Cic, intron 2 of 20)",7,25267704,25294159,26456,1,Cic-212,12466,Cic-212;Cic-214;Cic-205;Cic-202;Cic-201;Cic-207;Cic-203;Cic-211,Cic;Cic;Cic;Cic;Cic;Cic;Cic;Cic,0;0;0;0;0;-2591;-2998;-4451,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,3,71722,ENSMUSG00000005442,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
1748,cg03740978,0.0000238,0.00000593,4.012578077,0.0000754,gain,ns,0.0000137,0.0000101,1.36084646,0.17455071,pos,ns,0.006015983,0.002952521,2.037574923,0.042441325,pos,ns,1.372211066,-0.0000887,0.000101537,-0.873329324,0.383159591,neg,ns,0.010007533,Kctd1,Kctd1_Exon,18,15062954,15063003,15062954,15062955,50,+,CGCAGCACGCGGCACAGCGCCCCCTTGTCCATGGTCTCGAAGTCCGGGCT,"Exon (Kctd1-202/Kctd1, exon 1 of 5)",18,14968685,15151446,182762,2,Kctd1-201,88443,Kctd1-201;Kctd1-202;Kctd1-206;Kctd1-205,Kctd1;Kctd1;Kctd1;Kctd1,0;0;0;-1065,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,24,106931,ENSMUSG00000036225,conserved gene and region,18,15062316,15063260,945,*,945,97,0.650793651,0.97,0.102645503,9.90E-75,CpGisland,TRUE,U3,Pr-B
10318,cg15329972,-0.00000187,0.00000479,-0.390379011,0.696524417,loss,ns,0.0000111,0.00000813,1.360773892,0.174573625,pos,ns,0.006613572,0.002382912,2.775416636,0.005847995,pos,ns,2.232993032,-0.000267557,0.0000819,-3.264960508,0.001217275,neg,ns,0.880321547,Akap6,Akap6_Intron,12,52957628,52957677,52957676,52957677,50,-,TTGGGCTGGAAACTCCTTGAACAGTTTCTTTTGAAATAACACTACATACG,"Intron (Akap6-201/Akap6, intron 7 of 13)",12,52699383,53155599,456217,1,Akap6-201,258245,Akap6-201;Akap6-202,Akap6;Akap6,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,13,238161,ENSMUSG00000061603,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16401,cg21023122,-0.00000627,0.00000303,-2.066719115,0.039590685,loss,ns,-0.00000701,0.00000515,-1.360689596,0.174600247,neg,ns,-0.006085819,0.001510016,-4.030302039,0.0000702,neg,ns,4.153944029,0.000114127,0.0000519,2.19774323,0.028706663,pos,ns,0.880756938,Rad23a,Rad23a_Exon,8,84838299,84838348,84838299,84838300,50,+,CGCCCGCTGCTACCTGAAGAGGGAACAGAGCTGCAAATTCAAGAGAGAGA,"Exon (Rad23a-201/Rad23a, exon 4 of 9)",8,84834652,84840641,5990,2,Rad23a-201,2293,Calr-201;Calr-204;Gadd45gip1-201;Rad23a-206;Rad23a-201;Rad23a-202;Rad23a-204;Rad23a-205;Rad23a-207;Rad23a-203,Calr;Calr;Gadd45gip1;Rad23a;Rad23a;Rad23a;Rad23a;Rad23a;Rad23a;Rad23a,8586;6568;6777;-252;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,19358,ENSMUSG00000003813,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
5499,cg18396719,-0.0000329,0.00000519,-6.344085326,7.92E-10,loss,yes,-0.000012,0.00000882,-1.360521306,0.174653403,neg,ns,-0.002659635,0.00258373,-1.029378162,0.304104479,neg,ns,0.516977184,-0.0000796,0.0000889,-0.895597362,0.37116273,neg,ns,0.883046601,Dst,Dst_Intron,1,34114510,34114559,34114558,34114559,50,-,GTCTTTGCTGTCCTATCTTCTGTCTGTTATATTCATTAGCCAAGGGAGCG,"Intron (Dst-211/Dst, intron 6 of 102)",1,33908225,34307592,399368,1,Dst-211,206285,Dst-211;Dst-218;Dst-209;Dst-205;Dst-214;Dst-202;Dst-203;Dst-201;Dst-221;Dst-207,Dst;Dst;Dst;Dst;Dst;Dst;Dst;Dst;Dst;Dst,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,4,13518,ENSMUSG00000026131,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6725,cg21036891,0.00000608,0.000023,0.264657902,0.791448888,gain,ns,0.0000531,0.0000391,1.360510866,0.174656701,pos,ns,0.011229916,0.011442373,0.981432393,0.327144875,pos,ns,0.485259879,-0.000257193,0.000393502,-0.653600961,0.513853428,neg,ns,0.751793792,Pcdh1,Pcdh1_threeUTR,18,38189706,38189755,38189754,38189755,50,-,GCACGGGGGCCGTTTTGGTGTTCCGGTCTTCCGGGGGGCTGGGGCTGCCG,3' UTR,18,38185914,38212053,26140,2,Pcdh1-203,22298,Pcdh1-203;Pcdh1-204,Pcdh1;Pcdh1,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,10,17,75599,ENSMUSG00000051375,conserved gene and region,18,38189705,38189846,142,*,142,14,0.704225352,0.821827201,0.098591549,6.59E-11,CpGisland,TRUE,U11,Tr-P
24696,cg07131451,0.0000268,0.00000725,3.697081954,0.000257847,gain,ns,0.0000168,0.0000123,1.360493353,0.174662234,pos,ns,0.001164054,0.003608558,0.322581442,0.747229702,pos,ns,0.126545873,0.000231092,0.000124098,1.862170788,0.063525011,pos,ns,0.11871395,Neurog2,Neurog2_fiveUTR,3,127633147,127633196,127633195,127633196,50,+,AGCCACTGAACCACAAGCAGCTTCGCGTTAACTGGAGTGCCTGGGAGTCG,Promoter (<=1kb),3,127633135,127635631,2497,1,Neurog2-201,12,Neurog2-201,Neurog2,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,14,11924,ENSMUSG00000027967,mapped to different genes,3,127633131,127633673,543,*,543,58,0.679558011,0.925368749,0.106813996,4.90E-46,CpGisland,TRUE,U3,Pr-B
13271,cg08166269,0.00000165,0.00000103,1.607800057,0.108896942,gain,ns,0.00000238,0.00000175,1.360383176,0.174697042,pos,ns,0.000398399,0.000511678,0.778612389,0.436801985,pos,ns,0.359715397,-0.00000747,0.0000176,-0.424378209,0.67158437,neg,ns,0.96840532,Ubr3,Ubr3_Intron,2,69971411,69971460,69971411,69971412,50,-,CGGCCTAAAGTTCTTCAAAGAGAGGTAGATGTGTATGATATTTTCATTAA,"Intron (Ubr3-201/Ubr3, intron 22 of 38)",2,69897246,70024013,126768,1,Ubr3-201,74165,Ubr3-201;Ubr3-202,Ubr3;Ubr3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,5,68795,ENSMUSG00000044308,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21073,cg16670758,-0.0000217,0.00000556,-3.906344206,0.000115062,loss,ns,-0.0000128,0.00000945,-1.360187867,0.17475876,neg,ns,0.000840564,0.002767592,0.303716888,0.761547336,pos,ns,0.118303097,-0.000167876,0.0000952,-1.763828392,0.078745841,neg,ns,0.928716676,Dcdc5,Dcdc5_Intron,2,106307211,106307260,106307259,106307260,50,-,CACATTTGTGTTGAATACTCACTCATTTAAATGTCAGCACTGATGGGGCG,"Intron (Dcdc5-202/Dcdc5, intron 17 of 35)",2,106038218,106404066,365849,1,Dcdc5-202,268993,Dcdc5-202;Dcdc5-205;Dcdc5-204,Dcdc5;Dcdc5;Dcdc5,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,22,329482,ENSMUSG00000074981,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1386,cg08796632,0.00000341,0.00000684,0.498012073,0.618828639,gain,ns,0.0000158,0.0000116,1.360160433,0.17476743,pos,ns,0.008749174,0.003406085,2.568689358,0.010676262,pos,ns,1.971580788,-0.00033404,0.000117135,-2.851749198,0.004639862,neg,ns,0.629148807,Sema3d,Sema3d_Exon,5,12563140,12563189,12563188,12563189,50,+,TATTTTCAGTGTCCAAGCAAAACCTATGACCCACTGATTAAGTCCACCCG,"Exon (Sema3d-201/Sema3d, exon 12 of 18)",5,12383385,12588948,205564,1,Sema3d-201,179755,Sema3d-201;Sema3d-204;Sema3d-205,Sema3d;Sema3d;Sema3d,0;179634;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,108151,ENSMUSG00000040254,conserved gene and region,5,12563188,12563365,178,*,178,11,0.505617978,0.984414279,0.061797753,0.00000152,CpGisland,TRUE,U15,NS
21428,cg05468481,-0.0000109,0.00000496,-2.202504215,0.028365522,loss,ns,-0.0000115,0.00000843,-1.360097807,0.174787224,neg,ns,-0.007035794,0.002470137,-2.84834175,0.004688534,neg,ns,2.328962885,-0.0000829,0.0000849,-0.975587187,0.330029743,neg,ns,0.844666424,Ppfibp2,Ppfibp2_Exon,7,107739204,107739253,107739252,107739253,50,+,AAAAGTCACCAGCCAACTACATCATCTCAGCATCAAATGTGCCATTCACG,"Exon (Ppfibp2-201/Ppfibp2, exon 22 of 25)",7,107595266,107744885,149620,1,Ppfibp2-201,143938,Ppfibp2-201;Ppfibp2-202;Ppfibp2-204,Ppfibp2;Ppfibp2;Ppfibp2,0;0;-3653,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,19024,ENSMUSG00000036528,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2568,cg22063749,0.000000272,0.00000208,0.130906897,0.895933869,gain,ns,0.0000048,0.00000353,1.360095552,0.174787937,pos,ns,0.001787304,0.001033182,1.729902685,0.084642974,pos,ns,1.072409086,-0.0000544,0.0000355,-1.532318249,0.126463772,neg,ns,0.944099181,Usp54,Usp54_Exon,14,20565023,20565072,20565023,20565024,50,+,CGTGCTACAGCTGGCACCATGCAGGGCAAGTCTTAGTTTAGCTAAAATGC,"Exon (1810062O18Rik-202/1810062O18Rik-202, exon 5 of 6)",14,20548912,20618354,69443,2,Usp54-202,53282,Usp54-202;Usp54-201,Usp54;Usp54,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,9,78787,ENSMUSG00000034235,mapped to different genes,14,20564798,20565024,227,*,227,12,0.568281938,0.656702025,0.052863436,0.00000219,CpGisland,TRUE,NA,NRS
17283,cg08304103,-0.0000179,0.00000917,-1.954052767,0.051593905,loss,ns,-0.0000212,0.0000156,-1.359988167,0.174821882,neg,ns,0.008977044,0.004561982,1.967794896,0.049982765,pos,ns,1.301179724,-0.000673728,0.000156886,-4.294371834,0.0000235,neg,ns,0.801318706,Fzd4,Fzd4_Exon,7,89408206,89408255,89408254,89408255,50,+,TGGGCATCACTTCAGGCATGTGGATTTGGTCTGCCAAAACTCTTCACACG,"Exon (Fzd4-201/Fzd4, exon 2 of 2)",7,89404355,89413134,8780,1,Fzd4-201,3851,Fzd4-201;Tmem135-203,Fzd4;Tmem135,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,14366,ENSMUSG00000049791,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19118,cg19502209,0.0000721,0.00000516,13.97097651,9.68E-35,gain,yes,-0.0000119,0.00000877,-1.359947822,0.174834637,neg,ns,0.004105646,0.00256992,1.597577542,0.111155805,pos,ns,0.954067852,0.0000649,0.0000884,0.734225799,0.463366108,pos,ns,0.153084677,Gm10320,Gm10320_Intergenic_upstream,13,98503896,98503945,98503944,98503945,50,-,TGACCAGCGGGGAATAAAATACAAATTGAATAGTAACCATTCACAGGCCG,Distal Intergenic,13,98489348,98492001,2654,2,Gm10320-201,-11944,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,7,101055909,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
10884,cg06908171,-0.00000107,0.000000711,-1.50840923,0.132468274,loss,ns,-0.00000164,0.00000121,-1.359858771,0.174862792,neg,ns,0.00016919,0.000353639,0.478426609,0.632683832,pos,ns,0.198813263,-0.00000416,0.0000122,-0.341942576,0.7326258,neg,ns,0.982595081,Ralgapa1,Ralgapa1_Exon,12,55735123,55735172,55735123,55735124,50,+,CGTATATAGGCCGATGGCAGAGCACATTCACCAATGGATCGGCTTCTCAT,"Exon (Ralgapa1-204/Ralgapa1, exon 17 of 42)",12,55602896,55820767,217872,2,Ralgapa1-211,85595,Ralgapa1-211;Ralgapa1-212;Ralgapa1-201;Ralgapa1-202;Ralgapa1-204;Ralgapa1-207;Ralgapa1-208,Ralgapa1;Ralgapa1;Ralgapa1;Ralgapa1;Ralgapa1;Ralgapa1;Ralgapa1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,15,56784,ENSMUSG00000021027,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3610,cg07866419,0.0000136,0.00000434,3.129871025,0.001915293,gain,ns,0.00001,0.00000737,1.359827219,0.174872768,pos,ns,0.002315828,0.002159115,1.072581769,0.284293058,pos,ns,0.546233745,0.0000676,0.0000743,0.910464537,0.363284954,pos,ns,0.931597623,Gm12067,Gm12067_Intergenic_upstream,11,24764714,24764763,24764762,24764763,50,-,GCCTGCAAAATTAGGTGTCAGCATGCAAAGCTTATTGATGTATGAATGCG,Distal Intergenic,11,24552438,24553962,1525,2,Gm12067-201,-210801,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,26,58,100417843,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6159,cg09827655,0.0000907,0.0000104,8.711449361,1.83E-16,gain,yes,-0.0000241,0.0000177,-1.359705285,0.174911326,neg,ns,0.016151798,0.005182129,3.116826895,0.001999358,pos,ns,2.699109517,-0.00020187,0.000178213,-1.132745942,0.258196306,neg,ns,0.409568845,Nrg2,Nrg2_Intron,18,36195960,36196009,36195960,36195961,50,+,CGGAGGCCTTCACAGCCTGGGAGTCTGCCCAGCTGCTCCCGCAGACCCTG,"Intron (Nrg2-203/Nrg2, intron 1 of 9)",18,36017652,36197380,179729,2,Nrg2-203,1371,Nrg2-203;Nrg2-201,Nrg2;Nrg2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,20,100042150,ENSMUSG00000060275,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27786,cg03393051,0.00000267,0.00000213,1.252218953,0.211433999,gain,ns,0.00000492,0.00000362,1.359632836,0.17493424,pos,ns,0.003206018,0.001059546,3.025841069,0.002687111,pos,ns,2.570714407,-0.000128412,0.0000364,-3.524146636,0.000488852,neg,ns,0.946988253,Gm19058,Gm19058_Intergenic_downstream,1,186988788,186988837,186988788,186988789,50,-,CGGGAAGCTTGACAGTAACGCTAACTAGATCATCGAAAGTTCATGGTCAA,Distal Intergenic,1,187006007,187006604,598,2,Gm19058-201,17816,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,4,100418181,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18989,cg19069535,-0.00000764,0.00000541,-1.413405586,0.158539838,loss,ns,0.0000125,0.00000919,1.359436029,0.174996494,pos,ns,0.003310195,0.002690978,1.230108516,0.219589138,pos,ns,0.658389146,-0.00019377,0.0000925,-2.093847177,0.03708562,neg,ns,0.604188014,Nfia,Nfia_threeUTR,4,98114933,98114982,98114933,98114934,50,-,CGTTACAGGTATGCTGTATTTTTGAAGGTATTTTGTTGTATTAAGTTTGA,3' UTR,4,97777608,98118871,341264,1,Nfia-202,337325,Nfia-202;Nfia-203;Nfia-205;Nfia-201;Nfia-204,Nfia;Nfia;Nfia;Nfia;Nfia,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,8,44,18027,ENSMUSG00000028565,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4914,cg19292890,-0.0000112,0.00000332,-3.368812258,0.000850258,loss,ns,0.00000766,0.00000564,1.359082985,0.175108211,pos,ns,-0.0011862,0.001651201,-0.718386101,0.473060335,neg,ns,0.325083465,0.0000325,0.0000568,0.571661114,0.567965836,pos,ns,0.051020871,Prdm10,Prdm10_fiveUTR,9,31280507,31280556,31280555,31280556,50,-,GGCAGATTATGCTAATAAGACCCCGCCTTTTATGCTGCTCCCACTCTGCG,Promoter (<=1kb),9,31280538,31330618,50081,1,Prdm10-202,0,Prdm10-202;Prdm10-204,Prdm10;Prdm10,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,2,382066,ENSMUSG00000042496,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
11733,cg03929330,0.0000344,0.0000121,2.834621275,0.004889255,gain,ns,0.000028,0.0000206,1.358800072,0.175197775,pos,ns,0.003691319,0.006046296,0.610509176,0.541971884,pos,ns,0.266023243,-0.0003485,0.000207932,-1.676031867,0.094740149,neg,ns,0.472195191,Fam204a,Fam204a_Intergenic_upstream,19,60288166,60288215,60288166,60288167,50,+,CGACCAAACTCATTTCCCAGAAGACTAGAGTTTGAATCCAGTTAGGATCC,Distal Intergenic,19,60199435,60226701,27267,2,Fam204a-205,-61465,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,14,76539,ENSMUSG00000057858,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6332,cg10380103,0.00000331,0.00000452,0.732729049,0.464277366,gain,ns,0.0000104,0.00000767,1.358759768,0.175210537,pos,ns,-0.004691385,0.002248317,-2.086620523,0.037739324,neg,ns,1.423205881,0.000108576,0.0000773,1.404247727,0.16124617,pos,ns,0.841364311,Pknox2,Pknox2_Intron,9,36922014,36922063,36922062,36922063,50,+,GATCCTCACATCTCTGTGAGGCACTAAATCCTCATTACTTTTCCTGACCG,"Intron (Pknox2-207/Pknox2, intron 5 of 10)",9,36890982,37083309,192328,2,Pknox2-207,161246,Pknox2-207;Pknox2-201;Pknox2-202;Pknox2-203;Pknox2-206;Pknox2-204,Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,47,208076,ENSMUSG00000035934,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6136,cg12373953,-0.00000186,0.00000389,-0.478947274,0.632313792,loss,ns,0.00000897,0.00000661,1.358397054,0.175325421,pos,ns,-0.002078293,0.001935209,-1.073936842,0.283686207,neg,ns,0.54716178,-0.0000074,0.0000666,-0.111240261,0.911497814,neg,ns,0.915459066,Tenm2,Tenm2_Exon,11,36139608,36139657,36139608,36139609,50,+,CGGCATTCACATTTGCCATCTTTACAGGTCCCGTGCTCAATGCAGCGGGG,"Exon (Tenm2-202/Tenm2, exon 14 of 31)",11,36006656,37235882,1229227,2,Tenm2-202,1096225,Tenm2-202;Tenm2-208;Tenm2-201;Tenm2-204;Tenm2-205,Tenm2;Tenm2;Tenm2;Tenm2;Tenm2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,21,84,23964,ENSMUSG00000049336,conserved gene and region,11,36139608,36139733,126,*,126,10,0.642857143,0.782608696,0.079365079,0.000000572,CpGisland,TRUE,U15,NS
26942,cg10739156,-0.0000391,0.00000666,-5.869004911,1.13E-08,loss,yes,0.0000154,0.0000113,1.35819488,0.17538948,pos,ns,-0.003867994,0.003314431,-1.16701603,0.244100802,neg,ns,0.612430794,-0.0000432,0.000113983,-0.378973073,0.704967292,neg,ns,0.902572339,Sat1,Sat1_threeUTR,X,155215176,155215225,155215176,155215177,50,-,CGCCCATCCATGTACACGGAAGGGCCATGTACATGGCGAAGCTAGAGACT,3' UTR,20,155213132,155216449,3318,2,Sat1-201,1224,Sat1-201;Sat1-207;Sat1-204;Sat1-205;Sat1-206;Sat1-202;Sat1-203,Sat1;Sat1;Sat1;Sat1;Sat1;Sat1;Sat1,0;0;-1117;-272;0;0;1102,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,3,20229,ENSMUSG00000025283,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
22544,cg13985448,0.0000333,0.00000232,14.36426029,3.24E-36,gain,yes,-0.00000535,0.00000394,-1.357772113,0.175523492,neg,ns,0.003342183,0.001154373,2.895235779,0.00405781,pos,ns,2.391708261,0.00000574,0.0000397,0.144633967,0.885093862,pos,ns,0.018018637,Tal1,Tal1_Promoter,4,115056618,115056667,115056666,115056667,50,-,ATTAAAATGAATCATTTGGCCCATAATGGCCGAGGCGCTTATCGGGGGCG,Promoter (<=1kb),4,115056426,115071755,15330,1,Tal1-201,192,Tal1-201;Tal1-202;Tal1-203;Tal1-204,Tal1;Tal1;Tal1;Tal1,0;0;-1144;-2841,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,3,4,21349,ENSMUSG00000028717,conserved gene and region,4,115056648,115057443,796,*,796,76,0.639447236,0.935920047,0.095477387,4.01E-56,CpGisland,TRUE,NA,NRS
22224,cg25088877,-0.0000126,0.00000932,-1.350512677,0.177836636,loss,ns,0.0000215,0.0000158,1.357679241,0.175552942,pos,ns,-0.006844879,0.004640492,-1.475033009,0.141218546,neg,ns,0.850108263,0.00000765,0.000159586,0.047962768,0.9617768,pos,ns,0.327127759,Cryba4,Cryba4_Intergenic_downstream,5,112050631,112050680,112050631,112050632,50,-,CGTCTCTAATTGCCTGCTAAAATTGTCGCTGTCTCCTAAAGTGCAAATTA,Distal Intergenic,5,112246494,112251162,4669,2,Cryba4-202,200531,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,8,12959,ENSMUSG00000066975,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4330,cg25934383,-0.00000341,0.00000225,-1.515280188,0.130720417,loss,ns,-0.00000519,0.00000383,-1.357270621,0.175682559,neg,ns,0.00000605,0.001121301,0.005395552,0.995698464,pos,ns,0.001872163,0.00000663,0.0000386,0.172016356,0.863536911,pos,ns,0.934924756,Samd4b,Samd4b_threeUTR,7,28403691,28403740,28403691,28403692,50,-,CGGCTCTGACTGGGCATGCTGTTGCTGCCTCCAGGGTTGGCAAACCACAG,3' UTR,7,28399522,28436191,36670,2,Samd4b-204,32451,Paf1-201;Paf1-202;Paf1-207;Paf1-208;Samd4b-204;Samd4b-201;Samd4b-203;Samd4b-202;Samd4b-205,Paf1;Paf1;Paf1;Paf1;Samd4b;Samd4b;Samd4b;Samd4b;Samd4b,10740;10650;7866;5257;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,9,11,233033,ENSMUSG00000109336,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25329,cg21609272,-0.00000996,0.00000956,-1.041262519,0.298565112,loss,ns,0.0000221,0.0000162,1.357267173,0.175683653,pos,ns,0.004092667,0.004759916,0.859819174,0.390553159,pos,ns,0.408319845,0.00000903,0.000163693,0.055141275,0.956061434,pos,ns,0.187609107,Runx3,Runx3_Intron,4,135156512,135156561,135156512,135156513,50,-,CGGTGCCCTTAACTGGTTGCAGGTTGATGGATGGAAAATGTTTGCTTTTA,"Intron (Runx3-201/Runx3, intron 3 of 5)",4,135120652,135177990,57339,1,Runx3-201,35860,Runx3-201;Runx3-202;Runx3-206;Runx3-204;Runx3-205;Runx3-203,Runx3;Runx3;Runx3;Runx3;Runx3;Runx3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,6,12399,ENSMUSG00000070691,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
27535,cg24028874,0.00000176,0.00000599,0.293259531,0.769520001,gain,ns,0.0000138,0.0000102,1.357157014,0.175718608,pos,ns,-0.005531171,0.002980678,-1.855675547,0.064448769,neg,ns,1.190785372,0.000205198,0.000102505,2.001830909,0.046173954,pos,ns,0.840955566,Gm5265,Gm5265_Intergenic_downstream,1,169313328,169313377,169313328,169313329,50,-,CGTGCCAACAGTCGGCAAATTCACTGACAGTTCAAATGCGACATTTTTAG,Distal Intergenic,1,169453528,169453869,342,2,Gm5265-201,140541,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,13,13,383613,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20220,cg09362546,0.0000036,0.000000756,4.769147317,0.00000285,gain,ns,-0.00000174,0.00000128,-1.357014783,0.175763749,neg,ns,0.000905465,0.000376176,2.407026095,0.016667405,pos,ns,1.778132005,-0.0000243,0.0000129,-1.878833397,0.061205409,neg,ns,0.014237498,Hoxc11,Hoxc11_fiveUTR,15,102954524,102954573,102954524,102954525,50,+,CGATGTTTAACTCGGTCAACCTGGGCAACTTCTGCTCTCCGTCGCGCAAG,Promoter (<=1kb),15,102954427,102957708,3282,1,Hoxc11-201,97,Hoxc11-201,Hoxc11,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,24,109663,ENSMUSG00000001656,mapped to different genes,15,102954221,102954599,379,*,379,28,0.519788918,1.094020619,0.073878628,6.96E-18,CpGisland,TRUE,U13,Hc-P
3261,cg26212988,0.000055,0.0000047,11.69384351,2.05E-26,gain,yes,-0.0000108,0.00000799,-1.356966654,0.175779026,neg,ns,0.00712116,0.002340545,3.042522651,0.002546666,pos,ns,2.594028078,-0.000204769,0.0000805,-2.54399252,0.011444471,neg,ns,0.085648796,Sfrp1,Sfrp1_Exon,8,23411994,23412043,23411994,23411995,50,+,CGTGGGCTACAAGAAGATGGTGCTGCCCAACCTGCTGGAGCACGAGACCA,Promoter (<=1kb),8,23411502,23449632,38131,1,Sfrp1-201,492,Sfrp1-201,Sfrp1,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,20377,ENSMUSG00000031548,conserved gene and region,8,23411368,23411995,628,*,628,93,0.737261147,1.090196371,0.148089172,1.00E-88,CpGisland,TRUE,U3,Pr-B
14690,cg10703544,0.0000399,0.00000551,7.22752175,3.85E-12,gain,yes,0.0000127,0.00000937,1.356904001,0.175798914,pos,ns,0.009937664,0.002744598,3.620809131,0.000342936,pos,ns,3.464787155,-0.000140488,0.0000944,-1.48843815,0.137651922,neg,ns,0.12115368,Ctnna2,Ctnna2_Exon,6,77244963,77245012,77244963,77244964,50,+,CGCAGGAAGCAAAAGCAGAAACAGACCATGCATCAGATGGCTGCCATGTC,"Exon (Lrrtm1-201/Lrrtm1, exon 2 of 3)",6,76881637,77979699,1098063,2,Ctnna2-204,734687,Ctnna2-204;Ctnna2-205;Ctnna2-202;Ctnna2-201;Lrrtm1-201;Lrrtm1-202;Lrrtm1-203;Lrrtm1-204,Ctnna2;Ctnna2;Ctnna2;Ctnna2;Lrrtm1;Lrrtm1;Lrrtm1;Lrrtm1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,16,24,12386,ENSMUSG00000063063,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
15462,cg14238859,0.00000475,0.00000253,1.881285976,0.060870011,gain,ns,-0.00000582,0.00000429,-1.356758277,0.175845179,neg,ns,-0.002117899,0.001256878,-1.685046661,0.092985921,neg,ns,1.031582801,0.0000645,0.0000432,1.493278863,0.136381271,pos,ns,0.904076868,Adsl,Adsl_threeUTR,15,80967121,80967170,80967121,80967122,50,+,CGGCGCATTCGGCAAGAGCTGCCTTTCATGGCCACAGAGAACATCATCAT,3' UTR,15,80948490,80970946,22457,1,Adsl-201,18631,Adsl-201;Adsl-204;Adsl-205;Adsl-212;Adsl-211;Adsl-206;Adsl-207;Adsl-202;Adsl-210,Adsl;Adsl;Adsl;Adsl;Adsl;Adsl;Adsl;Adsl;Adsl,0;0;0;18604;18602;0;18584;5908;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,2,11564,ENSMUSG00000022407,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20162,cg01123777,0.0001101,0.000012,9.176113903,6.47E-18,gain,yes,-0.0000277,0.0000204,-1.356534497,0.175916243,neg,ns,-0.010093002,0.005971772,-1.690118433,0.092010557,neg,ns,1.036162338,-0.000584863,0.000205369,-2.847868875,0.004695326,neg,ns,0.707627983,Adam11,Adam11_Exon,11,102772892,102772941,102772940,102772941,50,+,GATGGGGACAAGATCCAGGTGCAGGATGACCTCCTGGAGACCCTGGCCCG,"Exon (Adam11-201/Adam11, exon 11 of 26)",11,102761439,102780262,18824,1,Adam11-201,11453,Adam11-201;Adam11-202;Adam11-203;Adam11-207;Adam11-208;Adam11-204;Adam11-205;Adam11-209;Adam11-206,Adam11;Adam11;Adam11;Adam11;Adam11;Adam11;Adam11;Adam11;Adam11,0;0;10803;10706;3125;0;-1140;-1176;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,11488,ENSMUSG00000020926,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
44,cg16855841,-0.0000185,0.00000732,-2.52922577,0.011927005,loss,ns,-0.0000169,0.0000124,-1.356505556,0.175925435,neg,ns,0.000418831,0.003644413,0.114924028,0.908579741,pos,ns,0.041636951,0.00000935,0.000125331,0.074594953,0.940585102,pos,ns,0.868363175,Gm50090,Gm50090_Intergenic_downstream,18,3600990,3601039,3600990,3600991,50,-,CGTTTGTTAATTGGTTGTTCGTTGGACTGTATATGAGGGAAAATTATTGC,Distal Intergenic,18,3558675,3560037,1363,1,Gm50090-201,42364,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2625,cg25680010,0.0000399,0.0000141,2.830612222,0.004949362,gain,ns,0.0000325,0.000024,1.356303475,0.175989629,pos,ns,0.090320241,0.007022185,12.86212863,1.24E-30,pos,yes,29.90540323,-0.000620182,0.000241492,-2.568122058,0.010693378,neg,ns,0.76831973,Ndst2,Ndst2_Exon,14,20728895,20728944,20728895,20728896,50,-,CGAGAAGCCCAAGTTGAAGGTGAAGTTGGGAACTAAGGTCCTGAGTTTGT,"Exon (Ndst2-202/Ndst2, exon 4 of 15)",14,20723730,20734562,10833,2,Ndst2-202,5618,Ndst2-202;Ndst2-205;Ndst2-201;Ndst2-204;Ndst2-207;Ndst2-203;Ndst2-206,Ndst2;Ndst2;Ndst2;Ndst2;Ndst2;Ndst2;Ndst2,0;0;0;0;0;0;-207,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,17423,ENSMUSG00000039308,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5132,cg02534279,-0.00000947,0.00000382,-2.476142102,0.013814733,loss,ns,-0.00000881,0.00000649,-1.356049562,0.176070314,neg,ns,-0.004405347,0.001902727,-2.315281078,0.02125022,neg,ns,1.672636569,0.0000491,0.0000654,0.750029312,0.453805896,pos,ns,0.854407129,Chat,Chat_Exon,14,32446885,32446934,32446933,32446934,50,-,TTGACTATCTTTCTCAACTGAGTGAACAGATCCCCCTCACTGAGACGGCG,"Exon (Chat-201/Chat, exon 8 of 16)",14,32408203,32465957,57755,2,Chat-201,19023,Chat-201;Chat-204;Chat-203;Chat-205,Chat;Chat;Chat;Chat,0;0;0;13977,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,12647,ENSMUSG00000021919,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23712,cg14613677,-0.00000283,0.00000131,-2.168744095,0.030862176,loss,ns,0.00000301,0.00000222,1.355977855,0.176093105,pos,ns,0.001249456,0.000649729,1.923039754,0.055390901,pos,ns,1.256561568,-0.0000115,0.0000223,-0.516185723,0.606092688,neg,ns,0.966125533,Hivep3,Hivep3_Exon,4,120099149,120099198,120099149,120099150,50,+,CGGACTCAAAGAAGGTACTGCAGTTCCCCAGCCTCCACACAACCACTAAT,"Exon (Hivep3-202/Hivep3, exon 4 of 9)",4,119814495,120138045,323551,1,Hivep3-202,284654,Hivep3-202;Hivep3-209,Hivep3;Hivep3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,8,16656,ENSMUSG00000028634,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U14,Hc-H
10487,cg04153067,-0.0000099,0.00000476,-2.079629421,0.03838107,loss,ns,0.000011,0.00000809,1.355896914,0.176118833,pos,ns,-0.001492747,0.002369129,-0.630082628,0.529104675,neg,ns,0.276458401,-0.0000148,0.0000815,-0.181584711,0.85602732,neg,ns,0.866114811,Npas3,Npas3_Intron,12,53838485,53838534,53838533,53838534,50,+,AACAAGACGTGCTTCCTTGCTTTTGACAAGATTTGCTGCAGTCTCATGCG,"Intron (Npas3-204/Npas3, intron 4 of 10)",12,53248157,54069532,821376,1,Npas3-204,590328,Npas3-204;Npas3-201;Npas3-203,Npas3;Npas3;Npas3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,83,103,27386,ENSMUSG00000021010,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18299,cg14485755,-0.0000421,0.0000103,-4.103762975,0.000052,loss,ns,0.0000236,0.0000174,1.355836167,0.176138145,pos,ns,-0.001358878,0.005102397,-0.266321463,0.790168695,neg,ns,0.10228018,-0.000278917,0.000175471,-1.589535793,0.112958774,neg,ns,0.831942635,Gm13788,Gm13788_Intergenic_upstream,2,94702781,94702830,94702781,94702782,50,-,CGTAAAGATAATGATTTCTGTGCTTTTGGTAGTGATAATTAAGATGAAAG,Distal Intergenic,2,94590821,94591421,601,2,Gm13788-201,-111409,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,100504053,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25451,cg07669456,0.00000731,0.00000469,1.559495863,0.119899335,gain,ns,-0.0000108,0.00000797,-1.35572519,0.176173428,neg,ns,-0.001467687,0.002333794,-0.628884498,0.529887792,neg,ns,0.275816086,0.000111754,0.0000803,1.392412738,0.164795401,pos,ns,0.904767684,Gm5904,Gm5904_Intron,7,136677164,136677213,136677212,136677213,50,+,CCCAACAGCCAGGAAACTGACACGTAATTACACACTTGCTGATGGTATCG,"Intron (Gm6249-201/Gm6249-201, intron 5 of 5)",7,136657209,136658073,865,1,Gm5904-201,19955,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,17,546009,NA,mapped to different genes,7,136677186,136677380,195,*,195,14,0.57948718,0.856873823,0.071794872,4.95E-09,CpGisland,TRUE,U11,Tr-P
3731,cg24354672,0.0000123,0.00000264,4.658982539,0.00000472,gain,ns,-0.00000607,0.00000448,-1.355722569,0.176174261,neg,ns,-0.002011236,0.001312039,-1.532908941,0.126318167,neg,ns,0.898534183,0.000126443,0.0000451,2.80231483,0.005393075,pos,ns,0.055440745,Pou2f2,Pou2f2_Promoter,7,25179458,25179507,25179506,25179507,50,-,CTGCAATAGGCCGAGCCGGCTGCATTAAGCTTCTTGCAATCAATAAAGCG,Promoter (<=1kb),7,25120618,25179726,59109,2,Pou2f2-208,219,Pou2f2-208,Pou2f2,0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,11,29,18987,ENSMUSG00000008496,conserved gene and region,7,25179353,25179528,176,*,176,22,0.6875,1.07436182,0.125,2.22E-19,CpGisland,TRUE,U3,Pr-B
20177,cg11034536,-0.00000066,0.000000506,-1.304019253,0.193194453,loss,ns,0.00000117,0.000000859,1.355660353,0.176194044,pos,ns,0.000169851,0.0002518,0.674547122,0.500466267,pos,ns,0.30062519,-0.0000177,0.00000866,-2.046727398,0.041527881,neg,ns,0.982371043,Btbd7,Btbd7_Exon,12,102837842,102837891,102837890,102837891,50,+,ATTCTTGTGGGAGTCCTCAAAGTTCGGTCTGTGATTTCTTCACCAGTTCG,"Exon (Btbd7-206/Btbd7, exon 4 of 12)",12,102780797,102878406,97610,2,Btbd7-206,40515,Btbd7-206;Btbd7-201;Btbd7-202;Btbd7-205;Btbd7-203,Btbd7;Btbd7;Btbd7;Btbd7;Btbd7,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,238386,ENSMUSG00000041702,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3274,cg20770516,0.0000049,0.00000388,1.263950966,0.207197212,gain,ns,-0.00000893,0.00000659,-1.35559994,0.176213255,neg,ns,0.008139287,0.001929588,4.218147992,0.0000324,pos,ns,4.489815249,-0.000371098,0.0000664,-5.592335065,4.92E-08,neg,yes,0.904307403,Kmt2e,Kmt2e_fiveUTR,5,23450214,23450263,23450262,23450263,50,+,GATACCAATGCATAGGACTCCATAGTAATCGAATTTACCAGAGGCGAACG,5' UTR,5,23434441,23486400,51960,1,Kmt2e-207,15773,Kmt2e-207;Kmt2e-201;Kmt2e-202,Kmt2e;Kmt2e;Kmt2e,0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,8,69188,ENSMUSG00000029004,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8703,cg23037611,0.000141559,0.0000141,10.06705329,8.22E-21,gain,yes,-0.0000324,0.0000239,-1.355443413,0.176263038,neg,ns,0.01622812,0.006998617,2.318760946,0.021058074,pos,ns,1.676581346,-0.000629573,0.000240682,-2.615788269,0.009337845,neg,ns,0.108197806,Gm31907,Gm31907_fiveUTR,18,45559588,45559637,45559636,45559637,50,+,GCTCCTCACACCTGCATTGCCAGCAGCAGCAACAGAGCCAGGACAAGCCG,Promoter (<=1kb),18,45501590,45560130,58541,2,Gm31907-202,493,Gm31907-202;Kcnn2-205;Kcnn2-201;Kcnn2-207;Kcnn2-206;Kcnn2-202;Kcnn2-208;Kcnn2-203,Gm31907;Kcnn2;Kcnn2;Kcnn2;Kcnn2;Kcnn2;Kcnn2;Kcnn2,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,15,15,102634286,NA,mapped to different genes,18,45559551,45559588,38,*,38,7,0.789473684,1.272727273,0.184210526,0.000000159,CpGisland,TRUE,U3,Pr-B
15936,cg03358158,-0.00000161,0.00000529,-0.304346831,0.76106787,loss,ns,0.0000122,0.00000899,1.355413241,0.176272636,pos,ns,0.006636486,0.002634015,2.519532529,0.012253526,pos,ns,1.911738923,-0.000162593,0.0000906,-1.794951804,0.07363541,neg,ns,0.915870258,Zfp638,Zfp638_fiveUTR,6,83928677,83928726,83928677,83928678,50,-,CGCACCACTTGTGAATTCCTTGAACCTGGGCATTGCAAACCCACTTCTGT,5' UTR,6,83867109,83929122,62014,1,Zfp638-217,61568,Zfp638-217;Zfp638-205;Zfp638-220;Zfp638-218;Zfp638-213;Zfp638-215;Zfp638-207;Zfp638-203;Zfp638-202;Zfp638-201;Zfp638-211;Zfp638-206;Zfp638-212,Zfp638;Zfp638;Zfp638;Zfp638;Zfp638;Zfp638;Zfp638;Zfp638;Zfp638;Zfp638;Zfp638;Zfp638;Zfp638,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,3,18139,ENSMUSG00000030016,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13724,cg25838771,-0.0000384,0.00000761,-5.052663073,0.000000746,loss,yes,0.0000175,0.0000129,1.355392085,0.176279365,pos,ns,-0.001987371,0.003785768,-0.524958528,0.599987242,neg,ns,0.221857984,-0.000292192,0.000130192,-2.24431254,0.025517577,neg,ns,0.836022184,Gm4052,Gm4052_Intergenic_upstream,13,72265611,72265660,72265611,72265612,50,+,CGGGGGAAAATAAACAGTTTGGCATCTCAGTAGATTAATTAATGCGCTTC,Distal Intergenic,13,72350221,72350671,451,1,Gm4052-201,-84561,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,16,16,100042828,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8167,cg07069368,-0.000018,0.00000726,-2.480459406,0.013651852,loss,ns,-0.0000167,0.0000123,-1.355369943,0.176286409,neg,ns,-0.011245058,0.003611255,-3.113892304,0.002018733,neg,ns,2.694921141,0.000214496,0.000124191,1.727149102,0.085136965,pos,ns,0.88333997,Supt3,Supt3_Intron,17,44815930,44815979,44815930,44815931,50,+,CGTCTCGATTTGCTAATTCTGATTCAGAAGAAAATTGGAAACATCTTTGG,"Intron (Supt3-201/Supt3, intron 2 of 11)",17,44777152,45119290,342139,1,Supt3-201,38778,Runx2-214;Runx2-202;Runx2-204;Runx2-211;Runx2-207;Runx2-201;Runx2-206;Runx2-208;Supt3-201;Supt3-204;Supt3-202;Supt3-203,Runx2;Runx2;Runx2;Runx2;Runx2;Runx2;Runx2;Runx2;Supt3;Supt3;Supt3;Supt3,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,5,109115,ENSMUSG00000038954,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4148,cg27051937,-0.00000106,0.00000452,-0.233965604,0.815166117,loss,ns,-0.0000104,0.00000768,-1.355368169,0.176286973,neg,ns,-0.005024594,0.002250321,-2.232834005,0.026273599,neg,ns,1.580480431,0.000232026,0.0000774,2.998200013,0.002935565,pos,ns,0.907922858,Syngap1,Syngap1_threeUTR,17,26970494,26970543,26970542,26970543,50,-,TGCAGGAGAGGCAGCTTCCCCCCTTGGGTCCAACAAACCCGCGTGTGACG,3' UTR,17,26941253,26972434,31182,1,Syngap1-204,29241,Gm50253-201;Syngap1-204;Syngap1-213;Syngap1-208;Syngap1-202;Syngap1-207;Syngap1-203;Syngap1-201;Syngap1-212;Syngap1-214;Syngap1-206;Syngap1-209;Syngap1-210;Zbtb9-201;Zbtb9-202,Gm50253;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Zbtb9;Zbtb9,-2674;0;0;0;0;0;0;0;0;0;0;0;0;-2624;-2674,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,18,240057,ENSMUSG00000067629,conserved gene and region,17,26970533,26970634,102,*,102,9,0.725490196,0.723404255,0.088235294,0.00000109,CpGisland,TRUE,U11,Tr-P
3973,cg25746175,-0.00000196,0.00000122,-1.605461131,0.109410527,loss,ns,0.00000281,0.00000208,1.355354403,0.176291352,pos,ns,0.000904777,0.000608453,1.487012752,0.13802782,pos,ns,0.86003337,-0.0000229,0.0000209,-1.094136514,0.274744532,neg,ns,0.980831138,Hook3,Hook3_Intron,8,26083770,26083819,26083818,26083819,50,-,GGAAGCGTTAGTTAAGAAGCGGTGTTGCCACGTCAAGGCCCTTCCCCGCG,"Intron (1700047A11Rik-202/1700047A11Rik-202, intron 1 of 4)",8,26021421,26119224,97804,2,Hook3-201,35405,Hook3-201;Hook3-208;Hook3-204,Hook3;Hook3;Hook3,0;-4393;8463,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,4,320191,ENSMUSG00000037234,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17443,cg26726152,-0.0000392,0.000017,-2.312042018,0.021430446,loss,ns,-0.000039,0.0000288,-1.355272204,0.176317503,neg,ns,-0.012288756,0.008438747,-1.456229863,0.14634112,neg,ns,0.834633626,-0.000583212,0.000290208,-2.009635727,0.04533604,neg,ns,0.101671815,Gatad2b,Gatad2b_Exon,3,90292847,90292896,90292847,90292848,50,+,CGTCTCTAAGGTAAAGTTGCAGCCTGAAGCGATTTTTTGACCCCCGACAC,Promoter (<=1kb),3,90293178,90363407,70230,1,Gatad2b-205,-282,Gatad2b-205;Gatad2b-206;Gatad2b-202;Gatad2b-204,Gatad2b;Gatad2b;Gatad2b;Gatad2b,0;-288;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,6,229542,ENSMUSG00000042390,conserved gene but different region,3,90292704,90292961,258,*,258,18,0.562015504,0.884571429,0.069767442,2.91E-11,CpGisland,TRUE,NA,NRS
23617,cg10138359,0.000000153,0.00000157,0.097450405,0.922431692,gain,ns,-0.00000362,0.00000267,-1.35521846,0.176334602,neg,ns,0.0000186,0.000783135,0.023776525,0.981046162,pos,ns,0.008310557,-0.0000648,0.0000269,-2.407908587,0.016627929,neg,ns,0.035592101,Dll4,Dll4_Intron,2,119327296,119327345,119327344,119327345,50,-,GACTCAGAGCACAATTGCGTTTCCTGCGGGTTATTTTTGGCGTGGGAACG,"Intron (Dll4-201/Dll4, intron 3 of 10)",2,119325784,119335962,10179,1,Dll4-201,1512,Dll4-201;Dll4-202,Dll4;Dll4,0;-1193,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,20,54485,ENSMUSG00000027314,conserved gene but different region,2,119327100,119327430,331,*,331,31,0.637462236,0.947985957,0.093655589,5.80E-23,CpGisland,TRUE,U3,Pr-B
11863,cg25052847,-0.0000269,0.0000114,-2.348015894,0.019501978,loss,ns,0.0000263,0.0000194,1.355149501,0.176356544,pos,ns,0.009751422,0.005696311,1.71188359,0.087918237,pos,ns,1.055921029,-0.000351747,0.000195896,-1.795580702,0.073535023,neg,ns,0.703939109,Gm13581,Gm13581_Intergenic_downstream,2,61345582,61345631,61345630,61345631,50,+,TATTTGCCATGGTGACAAAGCTGGGAGAAACATCCCATTAGCCACAGACG,Distal Intergenic,2,61224792,61225082,291,1,Gm13581-201,120790,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,3,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11242,cg20347779,0.000135852,0.0000159,8.530061888,6.57E-16,gain,yes,0.0000367,0.0000271,1.355053333,0.176387148,pos,ns,0.024665325,0.007926691,3.11167976,0.002033455,pos,ns,2.691765382,0.000238731,0.000272598,0.87576166,0.38183768,pos,ns,0.410813632,Nr4a2,Nr4a2_Exon,2,57112295,57112344,57112343,57112344,50,+,TGTTGGTGAGGTCCATGCTAAACTTGACAAACTCTGGAGTTAAGAAATCG,"Exon (Nr4a2-201/Nr4a2, exon 3 of 8)",2,57106830,57115038,8209,2,Nr4a2-201,2694,Nr4a2-201;Nr4a2-203;Nr4a2-206;Nr4a2-202;Nr4a2-205;Nr4a2-204,Nr4a2;Nr4a2;Nr4a2;Nr4a2;Nr4a2;Nr4a2,0;0;0;0;0;2029,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,25,18227,ENSMUSG00000026826,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
17439,cg22590252,-0.00000286,0.00000197,-1.452534335,0.147364493,loss,ns,-0.00000454,0.00000335,-1.355039836,0.176391443,neg,ns,-0.00086471,0.000981084,-0.881382807,0.378793507,neg,ns,0.421597474,0.0000275,0.0000337,0.815995621,0.415129189,pos,ns,0.938437875,Ankrd17,Ankrd17_Exon,5,90282870,90282919,90282870,90282871,50,-,CGTGTCATTGAGGGTCTGAGCAGGGCTGGCTACCATTAACCCTTGTTGTG,"Exon (Ankrd17-201/Ankrd17, exon 15 of 34)",5,90227166,90366577,139412,2,Ankrd17-201,83658,Ankrd17-201;Ankrd17-203;Ankrd17-202;Ankrd17-205;Ankrd17-212;Ankrd17-214;Ankrd17-211,Ankrd17;Ankrd17;Ankrd17;Ankrd17;Ankrd17;Ankrd17;Ankrd17,0;0;0;0;0;0;-4348,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,12,81702,ENSMUSG00000055204,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22059,cg05349233,-0.00000528,0.00000244,-2.162880389,0.031314605,loss,ns,-0.00000562,0.00000415,-1.355004483,0.176402694,neg,ns,-0.00165294,0.001214638,-1.360849183,0.17454985,neg,ns,0.75808052,0.0000175,0.0000418,0.419447069,0.675179948,pos,ns,0.952884339,Ppp2r5c,Ppp2r5c_Exon,12,110522487,110522536,110522535,110522536,50,+,TCAGATGTTCCTCCTGCTGATCAAGAGAAGCTTTTTATCCAGAAGTTACG,"Exon (Ppp2r5c-203/Ppp2r5c, exon 4 of 8)",12,110447252,110551110,103859,1,Ppp2r5c-203,75235,Ppp2r5c-203;Ppp2r5c-207;Ppp2r5c-205;Ppp2r5c-202;Ppp2r5c-201;Ppp2r5c-204,Ppp2r5c;Ppp2r5c;Ppp2r5c;Ppp2r5c;Ppp2r5c;Ppp2r5c,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,26931,ENSMUSG00000017843,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14048,cg11035945,0.000113608,0.0000123,9.228385128,4.42E-18,gain,yes,-0.0000283,0.0000209,-1.354888631,0.176439569,neg,ns,0.027753819,0.006127157,4.529640873,0.00000844,pos,ns,5.073622297,-0.000465964,0.000210712,-2.211374023,0.027739321,neg,ns,0.295253314,Gm27189,Gm27189_Intergenic_upstream,9,74479433,74479482,74479433,74479434,50,-,CGTGGCAGAATTACACAGCTCGCCATGGCTGCAGCCAGATAATTATTATT,Distal Intergenic,9,74568238,74568427,190,1,Gm27189-201,-88805,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,5,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14982,cg17112717,-0.00000641,0.00000495,-1.295325026,0.196171898,loss,ns,0.0000114,0.00000841,1.354725537,0.176491491,pos,ns,0.003737104,0.002462807,1.517416391,0.130180681,pos,ns,0.88545346,-0.000120051,0.0000847,-1.417441147,0.157358274,neg,ns,0.563494562,Crim1,Crim1_Exon,17,78302997,78303046,78303045,78303046,50,+,CTCTCTGGCTTATGTGGTTTCCCCGTGTGTGAGGTGGGATCCACTCCCCG,"Exon (Crim1-201/Crim1, exon 5 of 17)",17,78200248,78376592,176345,1,Crim1-201,102749,Crim1-201;Crim1-204;Crim1-205;Crim1-206;Crim1-202,Crim1;Crim1;Crim1;Crim1;Crim1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,50766,ENSMUSG00000024074,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10253,cg24227031,-0.0000203,0.00000525,-3.877007534,0.000129121,loss,ns,-0.0000121,0.00000891,-1.354672167,0.176508484,neg,ns,0.002904127,0.002610542,1.112461444,0.266801732,pos,ns,0.573811355,-0.000159858,0.0000898,-1.780623225,0.075953255,neg,ns,0.918664943,Mettl3,Mettl3_threeUTR,14,52296716,52296765,52296764,52296765,50,+,ATGATGCGTTGCAGTTGATTTGTCTTCACCCAAATAATTTCATCTACCCG,Promoter (<=1kb),14,52294857,52296751,1895,2,Mettl3-213,0,Mettl3-201;Mettl3-212;Mettl3-209;Mettl3-213;Mettl3-210;Mettl3-206;Mettl3-204;Mettl3-207;Mettl3-203;Mettl3-202;Mettl3-211;Mettl3-208;Mettl3-214;Mettl3-205;Tox4-201;Tox4-203,Mettl3;Mettl3;Mettl3;Mettl3;Mettl3;Mettl3;Mettl3;Mettl3;Mettl3;Mettl3;Mettl3;Mettl3;Mettl3;Mettl3;Tox4;Tox4,0;0;-47;0;0;0;0;0;0;0;0;8222;8342;8334;0;0,TRUE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,3,56335,ENSMUSG00000022160,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6829,cg00605332,0.0000775,0.0000149,5.187609491,0.000000386,gain,yes,-0.0000344,0.0000254,-1.354584661,0.176536348,neg,ns,0.016741149,0.007432127,2.252537921,0.024987519,pos,ns,1.602276865,-0.000722554,0.00025559,-2.826999798,0.005004096,neg,ns,0.240916908,Arhgap26,Arhgap26_Intron,18,38684553,38684602,38684553,38684554,50,-,CGTTCAGTCAGAACTGGATAGCTGTGTACTTTGCTCAAATGCCTGGGATC,"Intron (9630014M24Rik-201/9630014M24Rik-201, intron 3 of 3)",18,38676718,39110534,433817,1,Arhgap26-213,7835,Arhgap26-213,Arhgap26,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,6,71302,ENSMUSG00000036452,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
1759,cg23805159,0.00000567,0.00000286,1.981217994,0.048450158,gain,ns,0.00000658,0.00000486,1.35450964,0.17656024,pos,ns,0.003008568,0.00142414,2.112550162,0.035438614,pos,ns,1.450523275,-0.0000468,0.000049,-0.956018819,0.339807655,neg,ns,0.044799382,Kctd1,Kctd1_Intron,18,15063622,15063671,15063670,15063671,50,+,GCTGAGAGCTTTTGTGTTTAATGACCTTCAGCTACCGGGAGGCAAAGCCG,"Intron (Kctd1-201/Kctd1, intron 1 of 4)",18,14968685,15151446,182762,2,Kctd1-201,87775,Kctd1-201;Kctd1-202;Kctd1-206;Kctd1-205,Kctd1;Kctd1;Kctd1;Kctd1,0;0;0;-1733,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,24,106931,ENSMUSG00000036225,conserved gene and region,18,15063315,15063752,438,*,438,43,0.673515982,0.892352885,0.098173516,1.42E-32,CpGisland,TRUE,U3,Pr-B
7393,cg05182469,-0.0000128,0.0000192,-0.667739679,0.504796574,loss,ns,-0.0000442,0.0000326,-1.354192757,0.176661183,neg,ns,0.012762632,0.009560988,1.334865426,0.182899895,pos,ns,0.737786544,-0.000256727,0.000328802,-0.780796738,0.435517871,neg,ns,0.922434141,R3hcc1l,R3hcc1l_Intron,19,42539742,42539791,42539790,42539791,50,-,TGTGTCTTAATATTACTGGGCTTCTGACCGCTGAAATATGGCTTGGATCG,"Intron (R3hcc1l-201/R3hcc1l, intron 1 of 6)",19,42518759,42592343,73585,1,R3hcc1l-201,20983,R3hcc1l-201;R3hcc1l-202;R3hcc1l-203,R3hcc1l;R3hcc1l;R3hcc1l,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,13,52013,ENSMUSG00000025184,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24155,cg26127474,-0.00000351,0.00000159,-2.209931614,0.027840331,loss,ns,0.00000366,0.0000027,1.353941282,0.176741321,pos,ns,0.001036103,0.000791624,1.308832595,0.191560479,pos,ns,0.717694087,-0.0000188,0.0000272,-0.689246731,0.491183577,neg,ns,0.05127855,Orai1,Orai1_Exon,5,123015433,123015482,123015481,123015482,50,-,GCCAGAGTTACTCCGAGGTGATGAGCCTCAACGAGCACTCCATGCAGGCG,Promoter (<=1kb),5,123015074,123030156,15083,1,Orai1-201,359,Orai1-201;Orai1-202;Orai1-203,Orai1;Orai1;Orai1,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,109305,ENSMUSG00000049686,conserved gene and region,5,123014769,123015662,894,*,894,106,0.72147651,0.911157263,0.118568233,5.37E-89,CpGisland,TRUE,U1,Pr-A
19608,cg08005072,-0.0000122,0.00000449,-2.730610858,0.006683459,loss,ns,-0.0000103,0.00000762,-1.35392092,0.17674781,neg,ns,-0.003031598,0.00223272,-1.357805152,0.175513017,neg,ns,0.755690669,-0.000119761,0.0000768,-1.559729532,0.119844081,neg,ns,0.060093845,Enoph1,Enoph1_Exon,5,100040263,100040312,100040311,100040312,50,+,AGATATCGAAGGTACCACAACCCCGATTGCTTTCGTGAAGGTGAGGGGCG,Promoter (<=1kb),5,100039985,100068760,28776,1,Enoph1-202,278,Enoph1-202;Enoph1-201;Enoph1-203;Hnrnpdl-203;Hnrnpdl-202;Hnrnpdl-207;Hnrnpdl-201;Hnrnpdl-204;Hnrnpdl-205;Hnrnpdl-206,Enoph1;Enoph1;Enoph1;Hnrnpdl;Hnrnpdl;Hnrnpdl;Hnrnpdl;Hnrnpdl;Hnrnpdl;Hnrnpdl,0;0;0;0;0;0;0;0;0;-3140,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,67870,ENSMUSG00000029326,conserved gene but different region,5,100039357,100040322,966,*,966,111,0.698757764,0.941520468,0.114906832,1.89E-91,CpGisland,TRUE,U1,Pr-A
9371,cg18185838,-0.00000674,0.00000472,-1.429224182,0.153946715,loss,ns,0.0000109,0.00000802,1.353781637,0.176792209,pos,ns,0.007197539,0.002348551,3.064671702,0.002370608,pos,ns,2.625140243,-0.000268305,0.0000808,-3.321983522,0.001000703,neg,ns,0.891518155,Tenm3,Tenm3_Intron,8,48434401,48434450,48434449,48434450,50,-,AGGCTTTCGATTAATATTGCATGCCAGAACTGAAATTACATCCTTTGTCG,"Intron (Tenm3-201/Tenm3, intron 2 of 28)",8,48227682,48674690,447009,2,Tenm3-201,240240,Tenm3-201;Tenm3-206;Tenm3-204;Tenm3-208;Tenm3-203;Tenm3-202,Tenm3;Tenm3;Tenm3;Tenm3;Tenm3;Tenm3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,39,23965,ENSMUSG00000031561,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4015,cg16136769,-0.0000152,0.00000652,-2.334873787,0.020188076,loss,ns,0.000015,0.0000111,1.353771806,0.176795343,pos,ns,-0.001294876,0.003247414,-0.398740555,0.690358897,neg,ns,0.160925074,0.0000308,0.000111678,0.276161404,0.782608115,pos,ns,0.863087864,Gm50479,Gm50479_Intergenic_downstream,8,26446458,26446507,26446458,26446459,50,-,CGACTGTAAATCACTTTAGATGCCTTGGAATTACATTAAGTGTGAGAATT,Distal Intergenic,8,26237222,26237407,186,1,Gm50479-201,209285,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,21,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8232,cg09243301,-0.00000837,0.00000265,-3.162445145,0.001719404,loss,ns,-0.00000609,0.0000045,-1.353693967,0.176820159,neg,ns,-0.002169173,0.001317627,-1.646272029,0.100721145,neg,ns,0.996879346,-0.0000394,0.0000453,-0.869688845,0.385143351,neg,ns,0.947807122,Ebf1,Ebf1_Exon,11,44883935,44883984,44883935,44883936,50,+,CGCCCTCTTATCTGGAACATGGTAGGCGAATCATTTTCATTGGTTGGCAT,"Exon (Ebf1-202/Ebf1, exon 8 of 16)",11,44617317,45004995,387679,1,Ebf1-203,266618,Ebf1-203;Ebf1-202;Ebf1-201,Ebf1;Ebf1;Ebf1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,15,80,13591,ENSMUSG00000057098,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12542,cg01834956,-0.00000156,0.00000103,-1.50716175,0.132787554,loss,ns,0.00000238,0.00000175,1.353558649,0.176863307,pos,ns,0.001013407,0.000514063,1.971368669,0.049570786,pos,ns,1.304774196,-0.0000349,0.0000177,-1.975766537,0.049067738,neg,ns,0.971460903,Prpf39,Prpf39_threeUTR,12,65043806,65043855,65043806,65043807,50,+,CGCTTTGAAGATCAAGACTCTGCACGTGGGGATCAGAACATTGCCATGTT,3' UTR,12,65036333,65063386,27054,1,Prpf39-201,7473,Prpf39-201;Prpf39-205;Prpf39-202;Prpf39-207;Prpf39-210;Prpf39-209;Prpf39-203;Prpf39-208;Prpf39-206,Prpf39;Prpf39;Prpf39;Prpf39;Prpf39;Prpf39;Prpf39;Prpf39;Prpf39,0;0;0;0;0;0;0;-137;-4461,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,5,7,328110,ENSMUSG00000035597,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17656,cg24686610,0.000117507,0.0000071,16.53940836,1.73E-44,gain,yes,-0.0000163,0.0000121,-1.353432058,0.176903679,neg,ns,0.011390473,0.003536067,3.221226284,0.001412029,pos,ns,2.850156327,-0.0000994,0.000121605,-0.817721099,0.414144509,neg,ns,0.147812061,Zic4,Zic4_Intron,9,91367383,91367432,91367431,91367432,50,+,TAGTTAGGAAAATGCAGACATTTGGATTCAGTGCAAACATACAACACTCG,"Intron (Zic4-208/Zic4, intron 1 of 2)",9,91362413,91378915,16503,1,Zic4-208,4970,Zic1-201;Zic1-202;Zic1-203;Zic4-208;Zic4-206;Zic4-207;Zic4-211;Zic4-204;Zic4-203;Zic4-210;Zic4-209;Zic4-212,Zic1;Zic1;Zic1;Zic4;Zic4;Zic4;Zic4;Zic4;Zic4;Zic4;Zic4;Zic4,0;0;-4329;0;0;0;0;0;0;-3572;0;-3918,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,55,22774,ENSMUSG00000036972,mapped to different genes,9,91367412,91367502,91,*,91,9,0.516483517,1.568965517,0.098901099,0.000000407,CpGisland,TRUE,U13,Hc-P
23923,cg23829579,-0.0000392,0.0000176,-2.229025445,0.026528708,loss,ns,0.0000404,0.0000299,1.353143065,0.17699587,pos,ns,-0.00381797,0.008746748,-0.436501593,0.662776698,neg,ns,0.178632769,-0.0000445,0.0003008,-0.147858055,0.882550915,neg,ns,0.70585988,Insig2,Insig2_Intron,1,121136496,121136545,121136496,121136497,50,-,CGTTGGAATTTCTTGGTTCTTCATGGTAATGCCAAGTATAATTACCATGT,"Intron (Celrr-203/Celrr-203, intron 1 of 2)",1,121305893,121307318,1426,2,Insig2-206,170822,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,17,72999,ENSMUSG00000003721,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24185,cg26715268,0.0000667,0.0000175,3.807825665,0.000168985,gain,ns,-0.0000403,0.0000298,-1.353126793,0.177001062,neg,ns,0.014535941,0.008724204,1.666162432,0.096691138,pos,ns,1.014613327,-0.000619499,0.000300025,-2.064825744,0.039770787,neg,ns,0.302886157,Tnrc6a,Tnrc6a_Exon,7,123187366,123187415,123187414,123187415,50,-,TGAGCCATGGAAAGGTTATCCAAACATTGACCCTGAAACTGACCCTTACG,"Exon (Tnrc6a-201/Tnrc6a, exon 19 of 24)",7,123124177,123193987,69811,1,Tnrc6a-203,63189,Tnrc6a-203;Tnrc6a-201;Tnrc6a-205;Tnrc6a-208,Tnrc6a;Tnrc6a;Tnrc6a;Tnrc6a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,17,24,233833,ENSMUSG00000052707,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27727,cg26702116,-0.00000144,0.000000758,-1.897797912,0.058651566,loss,ns,0.00000174,0.00000129,1.353111827,0.177005837,pos,ns,0.000854049,0.000377348,2.263291187,0.024309025,pos,ns,1.614232457,-0.0000229,0.000013,-1.762089533,0.079039708,neg,ns,0.024038958,Lsm14b,Lsm14b_Exon,2,180025191,180025240,180025191,180025192,50,+,CGGCTCCTCAGGCACCCCGTATCTGGGCAGCAAGATCAGCCTCATCTCCA,Promoter (<=1kb),2,180024987,180035461,10475,1,Lsm14b-201,204,Lsm14b-201;Lsm14b-202;Lsm14b-203,Lsm14b;Lsm14b;Lsm14b,0;-1158;-2669,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,241846,ENSMUSG00000039108,conserved gene and region,2,180024595,180025647,1053,*,1053,138,0.743589744,0.949566104,0.131054131,1.33E-122,CpGisland,TRUE,U1,Pr-A
22624,cg17780197,0.000107062,0.0000151,7.089629948,9.13E-12,gain,yes,-0.0000347,0.0000257,-1.352490707,0.177204109,neg,ns,0.01918612,0.007516013,2.552699079,0.011168196,pos,ns,1.952016962,-0.001156127,0.000258475,-4.472874908,0.0000108,neg,ns,0.210809575,Pparg,Pparg_Exon,6,115463114,115463163,115463114,115463115,50,+,CGAGAAGGAGAAGCTGTTGGCGGAGATCTCCAGTGATATCGACCAGCTGA,"Exon (Pparg-202/Pparg, exon 6 of 8)",6,115360951,115490399,129449,1,Pparg-202,102163,Pparg-202;Pparg-204;Pparg-207;Pparg-201;Pparg-205,Pparg;Pparg;Pparg;Pparg;Pparg,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,3,19016,ENSMUSG00000000440,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27231,cg26887824,-0.00000195,0.00000285,-0.685022419,0.493841646,loss,ns,0.00000656,0.00000485,1.352282596,0.177270578,pos,ns,0.002552769,0.00142035,1.797282283,0.073263975,pos,ns,1.135109521,-0.000106569,0.0000488,-2.181756775,0.029878251,neg,ns,0.932175385,Klhl20,Klhl20_Exon,1,161106723,161106772,161106723,161106724,50,+,CGTCTTTCCTGAATACTGTATTTGACCCAGGCCATCACTGCATTGAACAC,"Exon (Klhl20-201/Klhl20, exon 4 of 12)",1,161088375,161131511,43137,2,Klhl20-201,24739,Klhl20-201;Klhl20-203;Klhl20-202;Klhl20-205;Klhl20-206;Klhl20-204,Klhl20;Klhl20;Klhl20;Klhl20;Klhl20;Klhl20,0;0;0;0;-2367;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,226541,ENSMUSG00000026705,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23746,cg08144172,0.00000256,0.0000149,0.171874473,0.86364836,gain,ns,0.0000342,0.0000253,1.352184312,0.177301976,pos,ns,0.007332973,0.007417452,0.98861078,0.323624603,pos,ns,0.489958469,0.0000133,0.000255086,0.052003283,0.958559571,pos,ns,0.61953465,Foxo6,Foxo6_threeUTR,4,120267089,120267138,120267137,120267138,50,-,ACAATTTTATTCATGAAAATATGCTGTACAATGCACTCTACACAGCCTCG,3' UTR,4,120267079,120287349,20271,2,Foxo6-201,20211,Foxo6-201,Foxo6,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,42,329934,ENSMUSG00000052135,conserved gene but different region,4,120267131,120267236,106,*,106,19,0.745283019,1.388965517,0.179245283,2.86E-20,CpGisland,TRUE,U13,Hc-P
26365,cg20918876,0.00000724,0.00000235,3.083113528,0.002232637,gain,ns,0.00000539,0.00000399,1.352141055,0.177315797,pos,ns,0.002260375,0.001168499,1.934426092,0.053970509,pos,ns,1.267843484,-0.0000458,0.0000402,-1.140868371,0.254805288,neg,ns,0.972248986,Htr2c,Htr2c_Exon,X,147169689,147169738,147169689,147169690,50,+,CGTAATCCTATTGAGCATAGCCGTTTCAATTCGCGGACTAAGGCCATCAT,"Exon (Htr2c-201/Htr2c, exon 5 of 6)",20,146962513,147197274,234762,1,Htr2c-201,207176,Htr2c-201;Htr2c-202;Htr2c-207;Htr2c-203,Htr2c;Htr2c;Htr2c;Htr2c,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,8,15560,ENSMUSG00000041380,conserved gene and region,X,147169604,147169752,149,*,149,10,0.483221477,1.157731158,0.067114094,0.00000263,CpGisland,TRUE,U15,NS
23634,cg11207320,0.0000799,0.0000164,4.857166532,0.00000189,gain,ns,-0.0000378,0.0000279,-1.352116548,0.177323626,neg,ns,0.018383847,0.008182281,2.246787394,0.025357074,pos,ns,1.595900859,-0.000666087,0.000281388,-2.36714675,0.018539831,neg,ns,0.419606387,Acvr2b,Acvr2b_Intron,9,119407944,119407993,119407992,119407993,50,+,TCCTGGCGTCCTTGAGTTTTCCCAGAAGTGGTTCAGGTTTCAGGGAGGCG,"Intron (Acvr2b-202/Acvr2b, intron 1 of 9)",9,119402118,119433515,31398,1,Acvr2b-202,5826,Acvr2b-202;Acvr2b-201;Acvr2b-205,Acvr2b;Acvr2b;Acvr2b,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,6,11481,ENSMUSG00000061393,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13856,cg05628201,0.0000429,0.00000397,10.80486683,2.62E-23,gain,yes,-0.00000912,0.00000674,-1.352106444,0.177326855,neg,ns,0.000800771,0.001975068,0.405439655,0.685434036,pos,ns,0.164034334,-0.00000463,0.0000679,-0.068217475,0.945656495,neg,ns,0.153314648,Six4,Six4_Exon,12,73112775,73112824,73112823,73112824,50,-,CCACGTAGCAGGTCGCTCTGGGGCAGGGACCACAGGAACCGGGCCAGGCG,Promoter (<=1kb),12,73099609,73113425,13817,2,Six4-201,601,Six4-201;Six4-202,Six4;Six4,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,8,20474,ENSMUSG00000034460,conserved gene and region,12,73112743,73113164,422,*,422,41,0.699052133,0.801018519,0.097156398,6.89E-31,CpGisland,TRUE,U3,Pr-B
21418,cg14738500,0.0000728,0.00000529,13.75783416,6.06E-34,gain,yes,-0.0000121,0.00000899,-1.351975766,0.177368612,neg,ns,-0.000486124,0.002632648,-0.184652048,0.853622699,neg,ns,0.068734045,0.000269958,0.0000905,2.981753982,0.003093214,pos,ns,0.116328482,Gfi1,Gfi1_Exon,5,107726636,107726685,107726684,107726685,50,+,GCTGAAAATACCTTGACACCCAATCCGAGAGGTTTGCTCATTTCCCTTCG,Promoter (<=1kb),5,107721606,107726036,4431,2,Gfi1-204,-600,Gfi1-201;Gfi1-203;Gfi1-202;Gfi1-204,Gfi1;Gfi1;Gfi1;Gfi1,-2293;-831;-831;-600,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,14581,ENSMUSG00000029275,conserved gene but different region,5,107726684,107726871,188,*,188,27,0.691489362,1.219899063,0.143617021,1.39E-25,CpGisland,TRUE,U3,Pr-B
3374,cg06752313,-0.0000172,0.00000536,-3.202471242,0.001504082,loss,ns,0.0000123,0.0000091,1.351964816,0.177372112,pos,ns,-0.001431658,0.00266645,-0.536915241,0.591711295,neg,ns,0.22789014,0.00013374,0.0000917,1.458465023,0.145724812,pos,ns,0.888947487,Apba1,Apba1_Exon,19,23915935,23915984,23915983,23915984,50,-,TTTGTCTTTATTACAGTCAAGAAAAAGCTTGGCTTCATTCCCAACCTACG,"Exon (Apba1-201/Apba1, exon 4 of 13)",19,23758887,23949596,190710,1,Apba1-201,157048,Apba1-201;Apba1-202,Apba1;Apba1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,319924,ENSMUSG00000024897,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18964,cg24651108,0.0000244,0.0000075,3.248427553,0.001287765,gain,ns,-0.0000172,0.0000127,-1.351825535,0.177416627,neg,ns,-0.007605797,0.003735135,-2.036284234,0.042571503,neg,ns,1.370881012,-0.00000209,0.000128451,-0.016239613,0.987053679,neg,ns,0.805744976,Nfia,Nfia_Intron,4,98081653,98081702,98081701,98081702,50,+,GTGTGTTTTGGTGTTGTTTGTGTGTGCAATCTCGTGCCGCTTCCTGAACG,"Intron (Nfia-202/Nfia, intron 9 of 10)",4,97777608,98118871,341264,1,Nfia-202,304045,Nfia-202;Nfia-203;Nfia-205;Nfia-201;Nfia-204,Nfia;Nfia;Nfia;Nfia;Nfia,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,44,18027,ENSMUSG00000028565,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1057,cg13782795,-0.0000147,0.0000119,-1.241608001,0.215319828,loss,ns,-0.0000272,0.0000201,-1.351795681,0.177426169,neg,ns,0.010883114,0.005900072,1.844573078,0.066053557,pos,ns,1.180103793,-0.000665184,0.000202903,-3.278335899,0.001162887,neg,ns,0.828703631,Vsnl1,Vsnl1_Exon,12,11326397,11326446,11326445,11326446,50,+,TTTGTTCTTATCCATCTTGCTGAAAATCTTGTCTACTCGCTGCTCAGGCG,"Exon (Vsnl1-202/Vsnl1, exon 4 of 4)",12,11325242,11435640,110399,2,Vsnl1-202,109194,Vsnl1-202;Vsnl1-201,Vsnl1;Vsnl1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,6,26950,ENSMUSG00000054459,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22308,cg04374241,-0.00000298,0.00000146,-2.041843733,0.042013182,loss,ns,-0.00000335,0.00000248,-1.351738589,0.17744442,neg,ns,0.000123243,0.000726541,0.169630505,0.865411371,pos,ns,0.062777403,-0.0000241,0.000025,-0.964673951,0.335460067,neg,ns,0.965747256,Mta1,Mta1_Exon,12,113131288,113131337,113131288,113131289,50,-,CGTCTATTTCCAACTTTGTTGTCCGTAGCCACACAGTCTTACCAGTGGTA,Promoter (<=1kb),12,113131332,113133380,2049,1,Mta1-207,0,Mta1-205;Mta1-201;Mta1-203;Mta1-204;Mta1-202;Mta1-206;Mta1-207;Mta1-208,Mta1;Mta1;Mta1;Mta1;Mta1;Mta1;Mta1;Mta1,0;0;0;0;0;0;0;-211,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,116870,ENSMUSG00000021144,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13960,cg17715469,0.00000253,0.00000381,0.665046782,0.506515024,gain,ns,-0.00000875,0.00000647,-1.351553185,0.177503696,neg,ns,-0.001818929,0.001896802,-0.958944809,0.338333847,neg,ns,0.470654553,-0.0000427,0.0000652,-0.654297639,0.513405175,neg,ns,0.9444302,Pdzd4,Pdzd4_Exon,X,73794449,73794498,73794497,73794498,50,-,GCCAGCATCTCCTGGATGGTGATCCAGTTGTCCAGGATCTTCTTGTTCCG,"Exon (Pdzd4-201/Pdzd4, exon 8 of 8)",20,73793359,73824969,31611,2,Pdzd4-201,30471,Pdzd4-201;Pdzd4-202;Ssr4-208;Ssr4-201;Ssr4-207;Ssr4-205;Ssr4-203;Ssr4-206;Ssr4-202,Pdzd4;Pdzd4;Ssr4;Ssr4;Ssr4;Ssr4;Ssr4;Ssr4;Ssr4,0;0;7421;7387;7265;7265;7225;7184;5605,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,245469,ENSMUSG00000002006,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20780,cg16255164,0.000113198,0.0000184,6.15299306,2.35E-09,gain,yes,-0.0000422,0.0000313,-1.351496172,0.177521927,neg,ns,0.020376785,0.009156501,2.225389878,0.026774232,pos,ns,1.572282984,-0.00032384,0.000314891,-1.02841766,0.304555151,neg,ns,0.480381774,Cbfb,Cbfb_Exon,8,105178611,105178660,105178659,105178660,50,-,ACCAATCTGTCTCTCCAGTTTTTTCCGGCCAGCTGGCAGGGAGAACAGCG,"Exon (Cbfb-201/Cbfb, exon 3 of 6)",8,105170674,105217989,47316,1,Cbfb-201,7937,Cbfb-201;Cbfb-202;Cbfb-204;Cbfb-203;Cbfb-205;Cbfb-207;Cbfb-206,Cbfb;Cbfb;Cbfb;Cbfb;Cbfb;Cbfb;Cbfb,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,12400,ENSMUSG00000031885,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27399,cg19933464,-0.0000412,0.00000922,-4.474198152,0.0000108,loss,ns,0.0000212,0.0000157,1.351447818,0.17753739,pos,ns,0.00554942,0.004587524,1.209676386,0.227324764,pos,ns,0.64335325,-0.000382876,0.000157765,-2.426884802,0.015798803,neg,ns,0.813192514,Gpm6b,Gpm6b_threeUTR,X,166383940,166383989,166383988,166383989,50,+,CATGTCCTATCACCTGTTCATTGTGGCCTGTGCAGGAGCTGGTGCCACCG,3' UTR,20,166238911,166388988,150078,1,Gpm6b-209,145029,Gpm6b-209;Gpm6b-201;Gpm6b-208;Gpm6b-210;Gpm6b-212;Gpm6b-202;Gpm6b-203;Gpm6b-204;Gpm6b-205;Gpm6b-206;Gpm6b-207,Gpm6b;Gpm6b;Gpm6b;Gpm6b;Gpm6b;Gpm6b;Gpm6b;Gpm6b;Gpm6b;Gpm6b;Gpm6b,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,2,14758,ENSMUSG00000031342,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2152,cg22588215,0.000000786,0.00000366,0.215075594,0.829849805,gain,ns,0.00000839,0.00000621,1.351320998,0.17757795,pos,ns,0.005925046,0.001819878,3.2557381,0.001256141,pos,ns,2.900961551,-0.000207556,0.0000626,-3.316362814,0.001020339,neg,ns,0.913974461,Mllt10,Mllt10_Exon,2,18122278,18122327,18122326,18122327,50,+,AGCAAAGCAGCCACTGGTGCTTGCATGACATGTAATAAACATGGATGTCG,"Exon (Mllt10-201/Mllt10, exon 6 of 23)",2,18055237,18212387,157151,1,Mllt10-201,67041,Mllt10-201;Mllt10-208;Mllt10-203;Mllt10-210;Mllt10-204;Mllt10-205;Mllt10-206;Mllt10-202,Mllt10;Mllt10;Mllt10;Mllt10;Mllt10;Mllt10;Mllt10;Mllt10,0;0;0;0;0;0;-1382;-3829,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,4,17354,ENSMUSG00000026743,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25634,cg13734740,-0.00000637,0.00000149,-4.278097689,0.0000251,loss,ns,0.00000342,0.00000253,1.351085824,0.177653183,pos,ns,0.000719425,0.000740736,0.971230299,0.332190794,pos,ns,0.478612408,-0.0000129,0.0000255,-0.504932884,0.613964732,neg,ns,0.053557564,Mospd3,Mospd3_fiveUTR,5,137600434,137600483,137600434,137600435,50,-,CGGACCCACCAGCTCCTGGTCCTGGGGCGCCCCACGGCGCATGCAGGCTC,Promoter (<=1kb),5,137596645,137600708,4064,2,Mospd3-202,225,Gm7285-201;Mospd3-202;Mospd3-201;Mospd3-203;Mospd3-205;Mospd3-204;Mospd3-206;Pcolce-204;Pcolce-201;Pcolce-209;Pcolce-212;Pcolce-202,Gm7285;Mospd3;Mospd3;Mospd3;Mospd3;Mospd3;Mospd3;Pcolce;Pcolce;Pcolce;Pcolce;Pcolce,-1110;0;0;0;0;0;0;0;0;5315;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,1,68929,ENSMUSG00000037221,conserved gene but different region,5,137600256,137600501,246,*,246,20,0.699186992,0.665224446,0.081300813,9.66E-14,CpGisland,TRUE,U1,Pr-A
15016,cg17708237,-0.00000815,0.00000305,-2.674066451,0.007891044,loss,ns,0.000007,0.00000518,1.350826966,0.177736021,pos,ns,0.000701984,0.001517534,0.462581929,0.643988585,pos,ns,0.19112183,-0.0000014,0.0000522,-0.026821578,0.978619301,neg,ns,0.971262181,Ntrk3,Ntrk3_Intron,7,78493833,78493882,78493833,78493834,50,-,CGCTGTTGACCTTTAAGAATAATTAATATCATCAGGATAGCAAACTCATC,"Intron (Ntrk3-201/Ntrk3, intron 3 of 16)",7,78175959,78578408,402450,2,Ntrk3-201,84526,Ntrk3-201;Ntrk3-206;Ntrk3-205;Ntrk3-202;Ntrk3-204;Ntrk3-213,Ntrk3;Ntrk3;Ntrk3;Ntrk3;Ntrk3;Ntrk3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,15,18213,ENSMUSG00000059146,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13849,cg11355954,-0.000000766,0.00000124,-0.617626433,0.537275041,loss,ns,0.00000285,0.00000211,1.350658323,0.177790004,pos,ns,0.001449605,0.000617431,2.347801066,0.019513027,pos,ns,1.709675357,-0.0000435,0.0000212,-2.049127648,0.041291117,neg,ns,0.969424071,Ola1,Ola1_Intron,2,73099957,73100006,73100005,73100006,50,+,ATTCCCTCTTTATAATGGTAATTACTCTGTCATTTATTATTCTATCAGCG,"Intron (Ola1-201/Ola1, intron 8 of 10)",2,73092801,73214447,121647,2,Ola1-201,114441,Ola1-201;Ola1-206;Ola1-203,Ola1;Ola1;Ola1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,19,67059,ENSMUSG00000027108,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27072,cg00308763,-0.0000468,0.00000816,-5.732200282,2.35E-08,loss,yes,0.0000187,0.0000139,1.350629033,0.177799381,pos,ns,-0.008298552,0.004060044,-2.043956465,0.041802646,neg,ns,1.378796224,0.0000405,0.000139625,0.290372434,0.771725478,pos,ns,0.543138501,Ctnnbl1,Ctnnbl1_Intergenic_upstream,2,157715895,157715944,157715895,157715896,50,+,CGGCTGAAAGAATGGGTTGGGGACGCTTGTCATAACTTTATTTGTGGGAG,Distal Intergenic,2,157737401,157891614,154214,1,Ctnnbl1-201,-21457,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,8,66642,ENSMUSG00000027649,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12162,cg08176344,-0.00000216,0.00000189,-1.146147555,0.25261805,loss,ns,0.00000433,0.00000321,1.350461692,0.177852962,pos,ns,0.00202361,0.00093993,2.152935745,0.032094986,pos,ns,1.49356281,-0.0000724,0.0000323,-2.24019599,0.025786506,neg,ns,0.947723968,Map2k5,Map2k5_Intron,9,63174756,63174805,63174756,63174757,50,-,CGCTCTGTGGAAAGACCTCACACTCAGAAGTGTAATGAACCCGTAGTCCC,"Intron (Map2k5-201/Map2k5, intron 21 of 21)",9,63163768,63377902,214135,2,Map2k5-201,203097,Map2k5-201,Map2k5,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,34,37,23938,ENSMUSG00000058444,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
527,cg13726873,0.0000876,0.0000164,5.344964656,0.000000176,gain,yes,-0.0000376,0.0000278,-1.350382531,0.177878313,neg,ns,0.019121671,0.008158876,2.343664998,0.01972682,pos,ns,1.704942916,-0.000415527,0.000280583,-1.480940174,0.139638164,neg,ns,0.420058865,Dlx6,Dlx6_Intergenic_upstream,6,6802157,6802206,6802205,6802206,50,-,GTTCCAATTTTGGAGGCTAAATCATTGCCAGTAGTTTCCAGGACATTCCG,Distal Intergenic,6,6863334,6868568,5235,1,Dlx6-202,-61177,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,36,13396,ENSMUSG00000029754,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1117,cg27537485,-0.00000311,0.00000684,-0.45367794,0.650378076,loss,ns,0.0000157,0.0000116,1.350360285,0.177885437,pos,ns,0.000337136,0.003406574,0.098966311,0.921228983,pos,ns,0.035632407,-0.000168096,0.000117152,-1.434853716,0.152336863,neg,ns,0.736881833,Ikzf1,Ikzf1_Promoter,11,11676062,11676111,11676110,11676111,50,+,CTTTCACTAATCCATATGCATATAAGGTGTATATTACCCCCATGTCTACG,Promoter (8-9kb),11,11685003,11707800,22798,1,Ikzf1-206,-8892,NA,NA,NA,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,4,15,22778,ENSMUSG00000018654,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23231,cg01078984,0.0000896,0.0000215,4.177073712,0.0000384,gain,ns,-0.0000492,0.0000364,-1.350221432,0.177929912,neg,ns,0.020889596,0.010676102,1.956668792,0.051283877,pos,ns,1.290019147,-0.000565375,0.00036715,-1.539899751,0.124604886,neg,ns,0.416860851,Xylt1,Xylt1_Intron,7,117571935,117571984,117571935,117571936,50,+,CGGTGTTAATTGCTTACACTGGAACATATTTGCTGTTGGAAATGTCACAC,"Intron (Xylt1-202/Xylt1, intron 3 of 6)",7,117380979,117635185,254207,1,Xylt1-202,190956,Xylt1-202;Xylt1-201,Xylt1;Xylt1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,6,233781,ENSMUSG00000030657,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14489,cg01836225,-0.00000341,0.00000148,-2.296548876,0.022311129,loss,ns,0.00000341,0.00000252,1.350220189,0.17793031,pos,ns,0.001211734,0.00073884,1.640049026,0.102009258,pos,ns,0.991360412,-0.0000658,0.0000254,-2.591565292,0.010006149,neg,ns,0.960059018,Ptprd,Ptprd_Exon,4,75956411,75956460,75956411,75956412,50,-,CGATTTTTGAATTTATTACATGGAAGATTGGCACTGATAAACCTTGAGGT,"Exon (Ptprd-206/Ptprd, exon 31 of 36)",4,75941238,76449980,508743,2,Ptprd-206,493520,Ptprd-206;Ptprd-204;Ptprd-213;Ptprd-220;Ptprd-203;Ptprd-217;Ptprd-218;Ptprd-219;Ptprd-201,Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,13,32,19266,ENSMUSG00000028399,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7307,cg20708615,-0.000002,0.00000785,-0.254752413,0.799083246,loss,ns,0.000018,0.0000133,1.349974266,0.178009099,pos,ns,0.001388084,0.003907072,0.355274739,0.722625382,pos,ns,0.141086788,-0.0000495,0.000134364,-0.368037633,0.713096345,neg,ns,0.472342641,Gm8176,Gm8176_Intergenic_upstream,1,42257945,42257994,42257993,42257994,50,+,GCAGCTGGACCCATCGCTGTCAACCAGGTAACAACCCCCAGACAATAGCG,Distal Intergenic,1,42179290,42180388,1099,2,Gm8176-201,-77557,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,13,17,666582,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14729,cg27145196,-0.000000413,0.00000245,-0.1686216,0.866204254,loss,ns,0.00000561,0.00000416,1.349780518,0.178071191,pos,ns,0.003031522,0.001217597,2.489757725,0.013306826,pos,ns,1.875925518,-0.000134575,0.0000419,-3.213870822,0.00144749,neg,ns,0.948209189,2210408I21Rik,2210408I21Rik_Intron,13,77478967,77479016,77478967,77478968,50,-,CGGGGATTCCTAACCTGCCATGCTGAATAAAACAGAACGACTGCTTTACA,"Intron (2210408I21Rik-201/2210408I21Rik, intron 19 of 19)",13,77135540,77613784,478245,1,2210408I21Rik-201,343427,2210408I21Rik-201,2210408I21Rik,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,19,20,72371,ENSMUSG00000071252,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4844,cg03933842,-0.0000109,0.00000273,-4.003809977,0.0000781,loss,ns,0.00000627,0.00000464,1.349599074,0.178129354,pos,ns,0.0000741,0.001360073,0.054490223,0.956579698,pos,ns,0.019278841,-0.0000123,0.0000468,-0.262435562,0.79315997,neg,ns,0.949305062,Phc3,Phc3_Exon,3,30948741,30948790,30948741,30948742,50,-,CGAGACAACAGGAATGTCAGACTGTACAGCAGCCACAGTGGTAGCGGGTG,"Exon (Phc3-209/Phc3, exon 6 of 15)",3,30899371,30969401,70031,2,Phc3-209,20611,Phc3-209;Phc3-201;Phc3-204;Phc3-208;Phc3-202;Phc3-206;Phc3-210;Phc3-203,Phc3;Phc3;Phc3;Phc3;Phc3;Phc3;Phc3;Phc3,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,8,241915,ENSMUSG00000037652,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18578,cg12164527,0.0000506,0.00000792,6.386838533,6.19E-10,gain,yes,0.0000181,0.0000134,1.349598856,0.178129424,pos,ns,0.007623323,0.003939382,1.935156962,0.05388039,pos,ns,1.268569271,-0.0000667,0.000135475,-0.492273293,0.622874595,neg,ns,0.440623077,Hoxb6,Hoxb6_Exon,11,96300845,96300894,96300845,96300846,50,+,CGCATGAAGTGGAAAAAGGAGAGCAAACTGCTCAGCGCGTCTCAGCTCAG,"Exon (Hoxb6-202/Hoxb6, exon 3 of 3)",11,96292476,96301569,9094,1,Hoxb6-202,8369,Hoxb5-202;Hoxb5-201;Hoxb6-202;Hoxb6-201,Hoxb5;Hoxb5;Hoxb6;Hoxb6,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,16,15414,ENSMUSG00000000690,conserved gene and region,11,96300758,96301050,293,*,293,22,0.627986348,0.799355159,0.075085324,2.54E-14,CpGisland,TRUE,U13,Hc-P
10861,cg18688640,-0.00000426,0.00000377,-1.130791705,0.259016847,loss,ns,-0.00000864,0.0000064,-1.349520714,0.178154477,neg,ns,-0.001341315,0.0018759,-0.71502483,0.475131834,neg,ns,0.323185871,-0.0000685,0.0000645,-1.062531346,0.28882155,neg,ns,0.880011006,Ddx46,Ddx46_Exon,13,55660384,55660433,55660384,55660385,50,+,CGATGCTTCATCTCAGTCTTAGTTTTATGATGTGTTTTGGAGAGGGCTGT,"Exon (Ddx46-204/Ddx46, exon 12 of 16)",13,55635027,55681256,46230,1,Ddx46-201,25357,Ddx46-201;Ddx46-202;Ddx46-204;Ddx46-203,Ddx46;Ddx46;Ddx46;Ddx46,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,212880,ENSMUSG00000021500,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18627,cg20673249,0.000133883,0.0000121,11.05700657,3.53E-24,gain,yes,-0.0000278,0.0000206,-1.349435749,0.178181722,neg,ns,0.012521984,0.006026474,2.077829284,0.038547815,pos,ns,1.414000239,-0.0000431,0.00020725,-0.208082115,0.835301492,neg,ns,0.12488798,Hoxb3,Hoxb3_Intron,11,96341231,96341280,96341279,96341280,50,-,ATCTCGGTTCAAGAAGAGTTCACAAGCTTTAAGCTTCCTTCCACGCAGCG,"Intron (Hoxb3-202/Hoxb3, intron 2 of 3)",11,96323326,96347930,24605,1,Hoxb3-202,17905,Hoxb3-202;Hoxb3-203;Hoxb3-204;Hoxb3-201,Hoxb3;Hoxb3;Hoxb3;Hoxb3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,19,15410,ENSMUSG00000048763,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
25804,cg08351436,0.0000135,0.0000039,3.456651785,0.000623293,gain,ns,0.00000893,0.00000662,1.349424036,0.178185477,pos,ns,0.003482411,0.001939354,1.795655642,0.073523068,pos,ns,1.133576376,-0.0000549,0.0000667,-0.823711254,0.410736898,neg,ns,0.08854381,Uncx,Uncx_Intergenic_downstream,5,139550083,139550132,139550131,139550132,50,-,GCGTAAAATGCCGGTTATTTTATCTAAGGTGAACAATTTGTCTGGCAGCG,Downstream (1-2kb),5,139543898,139545268,1371,1,Uncx-202,6234,Uncx-201;Uncx-202,Uncx;Uncx,0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,59,88,22255,ENSMUSG00000029546,conserved gene and region,5,139550084,139550187,104,*,104,11,0.509615385,1.62962963,0.105769231,5.75E-09,CpGisland,TRUE,U13,Hc-P
26535,cg20308712,0.00000856,0.0000057,1.50301641,0.133852814,gain,ns,-0.0000131,0.00000968,-1.349309644,0.178222163,neg,ns,-0.006028386,0.002834904,-2.126487157,0.034252452,neg,ns,1.46530834,0.000241269,0.0000975,2.474751026,0.013867581,pos,ns,0.788110736,Casz1,Casz1_Intron,4,148893519,148893568,148893567,148893568,50,+,CTTTACTTTACTTCCTTGTCACCCTAATTGATTGCATTAACCTTTCAGCG,"Intron (Casz1-201/Casz1, intron 3 of 15)",4,148804429,148945129,140701,1,Casz1-201,89090,Casz1-201;Casz1-202;Casz1-205,Casz1;Casz1;Casz1,0;0;4138,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,94,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
20593,cg15044985,0.00000296,0.00000226,1.310448642,0.19101418,gain,ns,-0.00000517,0.00000383,-1.349306736,0.178223095,neg,ns,0.004200651,0.001123173,3.739986836,0.00021917,pos,ns,3.659217915,-0.000120426,0.0000386,-3.117760866,0.001993227,neg,ns,0.952137536,Hipk1,Hipk1_Exon,3,103777540,103777589,103777540,103777541,50,-,CGGACAAAATTATACTCATCAGCATTTTCACTGCTTAGGCGGGAAAGGAT,"Exon (Hipk1-203/Hipk1, exon 2 of 16)",3,103739815,103791563,51749,2,Hipk1-203,13974,Hipk1-203;Hipk1-202;Hipk1-201;Hipk1-206;Hipk1-205,Hipk1;Hipk1;Hipk1;Hipk1;Hipk1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,11,15257,ENSMUSG00000008730,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14284,cg12045717,0.000147242,0.0000122,12.04476466,1.15E-27,gain,yes,-0.000028,0.0000208,-1.348960178,0.17833427,neg,ns,0.015448403,0.006084278,2.539069121,0.011603382,pos,ns,1.935415394,0.000109853,0.000209238,0.525012986,0.59994943,pos,ns,0.301212815,Gsx2,Gsx2_Promoter,5,75071761,75071810,75071809,75071810,50,-,GATCTTTGTTCTTTTCCACTATTATTGAGGACTTTCTTGAAGACTAAGCG,Promoter (3-4kb),5,75075601,75077893,2293,1,Gsx2-201,-3840,Gsx2-201;Gsx2-202,Gsx2;Gsx2,-3791;-3792,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,5,10,14843,ENSMUSG00000035946,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
7171,cg03483643,-0.00000211,0.000000929,-2.271575102,0.023797336,loss,ns,-0.00000213,0.00000158,-1.348900013,0.178353576,neg,ns,0.000201588,0.000462317,0.436038768,0.663112093,pos,ns,0.178413052,-0.0000309,0.0000159,-1.942053793,0.053036178,neg,ns,0.968927501,Lcor,Lcor_Exon,19,41558788,41558837,41558836,41558837,50,-,TGATCAGTACAGCTATAGCTCTTTGGTAATGGGTTCACAAACGGAGAGCG,"Exon (Lcor-201/Lcor, exon 8 of 8)",19,41482637,41562261,79625,1,Lcor-201,76151,Lcor-201;Lcor-204;Lcor-206;Lcor-202;Lcor-205,Lcor;Lcor;Lcor;Lcor;Lcor,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,25,212391,ENSMUSG00000025019,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9006,cg09887464,-0.0000642,0.0000114,-5.608288837,4.53E-08,loss,yes,0.0000262,0.0000194,1.348777984,0.178392739,pos,ns,-0.010745375,0.00569442,-1.887000904,0.060094411,neg,ns,1.22116592,0.000106055,0.000195831,0.541565632,0.588506775,pos,ns,0.698436208,4931429L15Rik,4931429L15Rik_Intron,9,46504454,46504503,46504454,46504455,50,-,CGGCTATCTGGTCAAATCACAGTTGATAAGCAACACTGAGCTGTCTTTTT,"Intron (Gm47144-201/Gm47144-201, intron 1 of 4)",9,46303361,46319986,16626,2,4931429L15Rik-201,-184517,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,22,74361,ENSMUSG00000056617,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9191,cg15973802,-0.00000359,0.00000469,-0.765595674,0.444499419,loss,ns,0.0000107,0.00000797,1.348743635,0.178403763,pos,ns,0.00532221,0.002334379,2.279925179,0.023291086,pos,ns,1.632810253,-0.000153465,0.0000803,-1.911636901,0.056844592,neg,ns,0.923613002,Cul1,Cul1_Exon,6,47497296,47497345,47497344,47497345,50,+,AAAGTGCTGAATGGAATTTGTGCCTACCTCAATAGACATTGGGTTCGCCG,"Exon (Cul1-204/Cul1, exon 4 of 20)",6,47453904,47523766,69863,1,Cul1-204,43392,Cul1-205;Cul1-204;Cul1-201,Cul1;Cul1;Cul1,43898;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,26965,ENSMUSG00000029686,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1951,cg23712344,0.00000471,0.00000313,1.5086886,0.132396854,gain,ns,-0.00000716,0.00000531,-1.348730018,0.178408134,neg,ns,-0.001710834,0.001555363,-1.099957741,0.27220397,neg,ns,0.565105545,0.00000412,0.0000535,0.077108762,0.938586765,pos,ns,0.05189966,Rarb,Rarb_fiveUTR,14,16575148,16575197,16575148,16575149,50,-,CGAATCATGAATTATGACAGACAAGCCAGCTAAAAGCCTGTAATTGATCC,Promoter (<=1kb),14,16430839,16575543,144705,2,Rarb-201,346,Rarb-201;Rarb-207;Rarb-202;Rarb-206;Rarb-203;Rarb-205;Rarb-204,Rarb;Rarb;Rarb;Rarb;Rarb;Rarb;Rarb,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,16,218772,ENSMUSG00000017491,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21704,cg23820073,-0.00000688,0.00000481,-1.430487113,0.153584434,loss,ns,-0.000011,0.00000817,-1.3487275,0.178408942,neg,ns,-0.006464435,0.002392382,-2.702091765,0.007269927,neg,ns,2.138469964,0.000161537,0.0000823,1.963401776,0.050493146,pos,ns,0.079159783,Prpf38b,Prpf38b_threeUTR,3,108910316,108910365,108910316,108910317,50,-,CGATTGAGCATGATTAATAGTGCATACCTCTACCTGCGACCCTGGGCTGC,3' UTR,3,108902805,108911696,8892,2,Prpf38b-204,1331,Prpf38b-204;Prpf38b-201;Prpf38b-208;Prpf38b-202;Prpf38b-203;Prpf38b-206;Prpf38b-205;Prpf38b-207,Prpf38b;Prpf38b;Prpf38b;Prpf38b;Prpf38b;Prpf38b;Prpf38b;Prpf38b,0;0;0;-4731;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,13,66921,ENSMUSG00000027881,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
24807,cg16134607,0.0000081,0.00000341,2.374528307,0.018179901,gain,ns,0.00000782,0.0000058,1.348686059,0.178422244,pos,ns,0.001434815,0.00169879,0.844609959,0.398979991,pos,ns,0.399048883,-0.0000223,0.0000584,-0.381038113,0.703435967,neg,ns,0.065385814,Zc3h10,Zc3h10_fiveUTR,10,128547704,128547753,128547704,128547705,50,+,CGCCGTAGTTGCTGCTGCCGCCTGCCGGTCCTCTAGCTTCGACAAAGAGC,Promoter (<=1kb),10,128544798,128547743,2946,2,Zc3h10-203,0,Gm9176-201;Rpl41-206;Rpl41-203;Rpl41-201;Rpl41-207;Rpl41-204;Rpl41-202;Rpl41-205;Zc3h10-201;Zc3h10-203;Zc3h10-204;Zc3h10-202,Gm9176;Rpl41;Rpl41;Rpl41;Rpl41;Rpl41;Rpl41;Rpl41;Zc3h10;Zc3h10;Zc3h10;Zc3h10,3060;1400;1409;1552;1385;1349;1406;1359;0;0;-65;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,3,103284,ENSMUSG00000039810,mapped to different genes,10,128547460,128548104,645,*,645,49,0.618604651,0.798913044,0.075968992,2.09E-31,CpGisland,TRUE,U1,Pr-A
5022,cg02416191,0.00000875,0.00000168,5.218567065,0.000000331,gain,yes,-0.00000384,0.00000285,-1.348356286,0.178528122,neg,ns,0.00108876,0.000834381,1.304871825,0.192904285,pos,ns,0.714658125,0.0000168,0.0000287,0.58562537,0.558553377,pos,ns,0.95791566,Nrg1,Nrg1_Exon,8,31837688,31837737,31837688,31837689,50,-,CGTAGTTTTGGCAGCGATCACCAGTAAACTCATTTGGGCACCTGAGAGAA,"Exon (Nrg1-203/Nrg1, exon 7 of 13)",8,31814551,32009540,194990,2,Nrg1-203,171803,Nrg1-203;Nrg1-202;Nrg1-218;Nrg1-219;Nrg1-213;Nrg1-206;Nrg1-201;Nrg1-214;Nrg1-210;Nrg1-224;Nrg1-231;Nrg1-221;Nrg1-233;Nrg1-208;Nrg1-212;Nrg1-211;Nrg1-205;Nrg1-227;Nrg1-226;Nrg1-209;Nrg1-216;Nrg1-217;Nrg1-232;Nrg1-223;Nrg1-220;Nrg1-225;Nrg1-230;Nrg1-204;Nrg1-229;Nrg1-228,Nrg1;Nrg1;Nrg1;Nrg1;Nrg1;Nrg1;Nrg1;Nrg1;Nrg1;Nrg1;Nrg1;Nrg1;Nrg1;Nrg1;Nrg1;Nrg1;Nrg1;Nrg1;Nrg1;Nrg1;Nrg1;Nrg1;Nrg1;Nrg1;Nrg1;Nrg1;Nrg1;Nrg1;Nrg1;Nrg1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,5,211323,ENSMUSG00000062991,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8503,cg25979569,0.0000148,0.00000467,3.174272216,0.001652986,gain,ns,0.0000107,0.00000793,1.348290534,0.178549237,pos,ns,0.000985265,0.002323351,0.424070859,0.671808256,pos,ns,0.172754663,0.0000633,0.0000799,0.792675447,0.428573149,pos,ns,0.048242289,Lbx1,Lbx1_fiveUTR,19,45235652,45235701,45235700,45235701,50,-,AGGCGGAGAGACGGGGCAATTGACTATTGCTAACAAGTTAGCCTTGATCG,Promoter (<=1kb),19,45232684,45235812,3129,2,Lbx1-201,111,Lbx1-201,Lbx1,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,50,16814,ENSMUSG00000025216,conserved gene and region,19,45234819,45235701,883,*,883,109,0.722536806,0.959428611,0.123442809,1.11E-93,CpGisland,TRUE,U3,Pr-B
14817,cg05705651,0.000123366,0.000012,10.26268779,1.82E-21,gain,yes,-0.0000275,0.0000204,-1.348213131,0.178574098,neg,ns,0.020456317,0.005982885,3.419139229,0.000712239,pos,ns,3.147374226,-0.000590379,0.000205751,-2.869387717,0.004395183,neg,ns,0.178070281,Pipox,Pipox_Intergenic_downstream,11,77872316,77872365,77872364,77872365,50,-,AATCTCAGCTTGTTGGGAACAGATGGCCTTGGCTGACGAATAAACCACCG,Distal Intergenic,11,77881060,77882686,1627,2,Pipox-202,10370,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,6,19193,ENSMUSG00000017453,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17727,cg20851152,-0.0000101,0.00000812,-1.239673207,0.216033906,loss,ns,-0.0000186,0.0000138,-1.347778466,0.178713751,neg,ns,-0.005540539,0.004040935,-1.371103314,0.171334497,neg,ns,0.766155186,-0.000110159,0.000138967,-0.792696959,0.428560632,neg,ns,0.733457305,Gm47084,Gm47084_Intergenic_upstream,10,91501691,91501740,91501691,91501692,50,-,CGAGGTAATTTTCCAAAGCCGATTTTCTTAGTGTTCAGCAAAGTGGAATG,Distal Intergenic,10,91448221,91448380,160,2,Gm47084-201,-53360,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26915,cg10389748,0.000059,0.00000561,10.51954888,2.48E-22,gain,yes,-0.0000128,0.00000952,-1.347774339,0.178715077,neg,ns,0.004628344,0.002790135,1.658823974,0.098162633,pos,ns,1.008053799,-0.0000763,0.000096,-0.795009885,0.427216002,neg,ns,0.07736176,Prdm16,Prdm16_Promoter,4,154636252,154636301,154636300,154636301,50,-,ACTATTTCAAAAGCCCGGAATATGATTTGACCAGGACTGAGAGCCACTCG,Promoter (<=1kb),4,154316125,154636866,320742,2,Prdm16-201,565,Prdm16-201;Prdm16-202;Prdm16-203;Prdm16-204;Prdm16-205;Prdm16-206;Prdm16-210;Prdm16-207;Prdm16-212,Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16,0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,1,32,70673,ENSMUSG00000039410,conserved gene and region,4,154635135,154636773,1639,*,1639,193,0.718730934,0.913086651,0.117754729,8.49E-161,CpGisland,TRUE,U3,Pr-B
11323,cg20382695,-0.00000476,0.00000567,-0.839796627,0.401669613,loss,ns,0.000013,0.00000963,1.347622054,0.178764024,pos,ns,0.006929127,0.002820053,2.457090997,0.014554259,pos,ns,1.837009911,-0.0000598,0.000097,-0.616754488,0.537849352,neg,ns,0.450989139,Atrnl1,Atrnl1_Exon,19,57611607,57611656,57611655,57611656,50,+,TGGGGGACCAGTGCCAGCACTGCCAGGGCAGGTTCAAGTAAGTGCCTTCG,Promoter (<=1kb),19,57611034,58133343,522310,1,Atrnl1-201,573,Atrnl1-201,Atrnl1,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,226255,ENSMUSG00000054843,conserved gene but different region,19,57611655,57611918,264,*,264,20,0.666666667,0.705128205,0.075757576,3.84E-13,CpGisland,TRUE,U1,Pr-A
12550,cg04623623,0.000100146,0.0000101,9.916460951,2.60E-20,gain,yes,-0.0000231,0.0000172,-1.347599438,0.178771294,neg,ns,0.009429953,0.005026356,1.876101318,0.061580838,pos,ns,1.210554404,-0.000295709,0.000172856,-1.710725949,0.088132121,neg,ns,0.077280058,Pappa,Pappa_fiveUTR,4,65124538,65124587,65124586,65124587,50,-,GGACATGCGGCTCTGGAGTTGGGTGCTGCACCTGGGGCTGCTGAGCGCCG,Promoter (<=1kb),4,65124174,65357509,233336,1,Pappa-201,364,Pappa-201,Pappa,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,5,18491,ENSMUSG00000028370,conserved gene but different region,4,65124410,65124914,505,*,505,69,0.754455446,0.969316791,0.136633663,4.66E-63,CpGisland,TRUE,U3,Pr-B
6052,cg21756215,0.00000405,0.00000112,3.612968825,0.000353042,gain,ns,0.00000257,0.0000019,1.347556788,0.178785005,pos,ns,0.000819458,0.000557687,1.469387116,0.142741906,pos,ns,0.845448509,-0.0000231,0.0000192,-1.202877624,0.229941565,neg,ns,0.010186825,Psd2,Psd2_Intergenic_upstream,18,35920091,35920140,35920091,35920092,50,-,CGGCGTGAGAATCCCGCCCATCTGTGAGCCGGCCTCACGCCGTCAGACCC,Distal Intergenic,18,35964830,36014712,49883,1,Psd2-201,-44739,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,24,29,74002,ENSMUSG00000024347,mapped to different genes,18,35919677,35920257,581,*,581,41,0.690189329,0.594514326,0.070567986,4.29E-25,CpGisland,TRUE,U3,Pr-B
17074,cg24181917,0.000111184,0.0000118,9.462370465,7.87E-19,gain,yes,-0.0000269,0.00002,-1.347390741,0.178838392,neg,ns,0.014743803,0.005848158,2.521101874,0.012200128,pos,ns,1.913635619,-0.000316498,0.000201118,-1.573696131,0.116577714,neg,ns,0.492190531,Mef2d,Mef2d_Intergenic_downstream,3,88198210,88198259,88198210,88198211,50,+,CGGCGTAATCTCTAAGACCCTGGTAAATTGGAAAATGATCCATTATATTC,Distal Intergenic,3,88168252,88168906,655,1,Mef2d-207,29958,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,10,17261,ENSMUSG00000001419,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
16354,cg07011212,0.0000245,0.0000162,1.514862385,0.130826183,gain,ns,-0.0000371,0.0000275,-1.347357637,0.178849036,neg,ns,0.017309633,0.00805663,2.148495469,0.032448799,pos,ns,1.488801377,-0.000586011,0.000277067,-2.115052122,0.035223117,neg,ns,0.417889313,Nfix,Nfix_Intron,8,84770813,84770862,84770813,84770814,50,-,CGGCAGTAAATTGGGCGTAGCTGAGTGGAGGCTAAAAATTAACCAGCCAT,"Intron (Nfix-204/Nfix, intron 2 of 10)",8,84704712,84773396,68685,2,Nfix-204,2534,Nfix-204;Nfix-201;Nfix-202;Nfix-203;Nfix-205,Nfix;Nfix;Nfix;Nfix;Nfix,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,49,18032,ENSMUSG00000001911,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6817,cg22313191,-0.000000219,0.00000075,-0.292194492,0.770333376,loss,ns,0.00000172,0.00000127,1.347111214,0.17892829,pos,ns,0.000995515,0.000373382,2.666212741,0.00807347,pos,ns,2.092939778,-0.0000249,0.0000128,-1.938266426,0.053498388,neg,ns,0.97506044,Psmb7,Psmb7_Intron,2,38595091,38595140,38595091,38595092,50,-,CGCTACATGACAAATGGGCAGCACTTGTAAAAGGCACAAAGAGGTCCACG,"Intron (Psmb7-201/Psmb7, intron 6 of 7)",2,38588036,38644087,56052,2,Psmb7-201,48947,Nek6-201;Psmb7-201,Nek6;Psmb7,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,9,19177,ENSMUSG00000026750,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22667,cg02342576,0.000000855,0.00000128,0.666724265,0.505444189,gain,ns,0.00000293,0.00000218,1.347020118,0.178957595,pos,ns,0.001296448,0.000638281,2.031155292,0.043092165,pos,ns,1.365601691,-0.0000346,0.000022,-1.575773778,0.116097877,neg,ns,0.96405435,BC052040,BC052040_Intron,2,115657558,115657607,115657558,115657559,50,-,CGGGTGTTTGAAAGGCCCATTCATCATGTCCTACAAGTAGTCAATTCCTC,"Intron (BC052040-203/BC052040, intron 5 of 10)",2,115581716,115778768,197053,1,BC052040-203,75842,BC052040-203;BC052040-201,BC052040;BC052040,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,37,49,399568,ENSMUSG00000040282,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19769,cg16943230,-0.0000171,0.00000501,-3.413659756,0.000726182,loss,ns,-0.0000115,0.00000852,-1.346828715,0.179019179,neg,ns,0.011082084,0.002495668,4.440528567,0.0000125,pos,ns,4.903215939,-0.000337651,0.0000858,-3.934147508,0.000103088,neg,ns,0.888701753,Ppp4r3a,Ppp4r3a_threeUTR,12,101045628,101045677,101045676,101045677,50,-,TATTAATCAAGTCCTTCATGAGCAGGTAGCCAGGCAACCATGCTGACACG,3' UTR,12,101039409,101083663,44255,2,Ppp4r3a-201,37986,Ppp4r3a-201;Ppp4r3a-205;Ppp4r3a-202;Ppp4r3a-208;Ppp4r3a-206,Ppp4r3a;Ppp4r3a;Ppp4r3a;Ppp4r3a;Ppp4r3a,0;0;0;-2083;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,10,68734,ENSMUSG00000041846,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23954,cg26688031,0.00000164,0.000000739,2.22161758,0.027031072,gain,ns,-0.00000169,0.00000126,-1.346816502,0.17902311,neg,ns,-0.000715309,0.00036803,-1.943615196,0.052846603,neg,ns,1.276982927,0.0000229,0.0000127,1.812314473,0.070904972,pos,ns,0.985410731,Ppip5k1,Ppip5k1_Exon,2,121323199,121323248,121323247,121323248,50,+,AGGCACTCGGGGTCATCCTGGCCTGAGCGCAGCCAGTTCCGGAAGAGGCG,"Exon (Ppip5k1-210/Ppip5k1, exon 4 of 5)",2,121310561,121351017,40457,2,Ppip5k1-201,27769,Ppip5k1-201;Ppip5k1-205;Ppip5k1-204;Ppip5k1-203;Ppip5k1-202;Ppip5k1-209;Ppip5k1-210;Ppip5k1-206;Ppip5k1-218,Ppip5k1;Ppip5k1;Ppip5k1;Ppip5k1;Ppip5k1;Ppip5k1;Ppip5k1;Ppip5k1;Ppip5k1,0;0;0;0;0;0;0;0;13911,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,327655,ENSMUSG00000033526,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17298,cg13194594,-0.00000123,0.00000328,-0.375753247,0.707357343,loss,ns,-0.00000751,0.00000558,-1.3468013,0.179028002,neg,ns,-0.003614102,0.001634454,-2.211198678,0.027751583,neg,ns,1.556712239,0.000121029,0.0000562,2.153208183,0.032073386,pos,ns,0.91873789,Shank3,Shank3_Exon,15,89503534,89503583,89503582,89503583,50,-,CCTCAGACCCTGCTGGACCTGGGGGCTTCACCTGACTACAAGGACAGCCG,"Exon (Shank3-203/Shank3, exon 6 of 22)",15,89499623,89560261,60639,1,Shank3-203,3911,Shank3-203;Shank3-205;Shank3-202,Shank3;Shank3;Shank3,0;3411;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,Exon,1,2,58234,ENSMUSG00000022623,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6609,cg05284834,0.00000254,0.000000804,3.161017141,0.001727588,gain,ns,-0.00000184,0.00000137,-1.34666581,0.179071607,neg,ns,0.000144439,0.000400187,0.360930101,0.718397534,pos,ns,0.143635167,-0.0000237,0.0000138,-1.723232913,0.085843559,neg,ns,0.016665327,Rreb1,Rreb1_Intron,13,37827956,37828005,37828004,37828005,50,-,GAGCCCAGATCCGGACGAGCAGTTCACATTCCATTACGAAATTCTACACG,"Intron (Rreb1-204/Rreb1, intron 1 of 3)",13,37778400,37893849,115450,1,Rreb1-204,49556,Rreb1-204;Rreb1-208;Rreb1-203;Rreb1-207;Rreb1-210;Rreb1-206;Rreb1-202,Rreb1;Rreb1;Rreb1;Rreb1;Rreb1;Rreb1;Rreb1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,10,68750,ENSMUSG00000039087,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
2933,cg02494169,-0.00000206,0.00000391,-0.527445538,0.598261505,loss,ns,0.00000895,0.00000665,1.346563985,0.179104383,pos,ns,0.005706913,0.001947624,2.930192301,0.003639098,pos,ns,2.43900624,-0.000156586,0.000067,-2.33784688,0.020031037,neg,ns,0.924989309,Lrmda,Lrmda_Intron,14,22074996,22075045,22075044,22075045,50,-,GCTTCAAGGCTTAGCATTTATTGAACAAAGCTCATTGAAGGAATATAACG,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,55284,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206,Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14020,cg25275716,-0.00000074,0.000000546,-1.35503089,0.17639429,loss,ns,0.00000125,0.000000928,1.346500293,0.179124887,pos,ns,0.000830793,0.000271859,3.055969156,0.002438402,pos,ns,2.612894615,-0.0000231,0.00000935,-2.469102024,0.014084039,neg,ns,0.011969815,Arpc2,Arpc2_fiveUTR,1,74236818,74236867,74236866,74236867,50,+,CCGCCGCCATGATCCTGCTGGAGGTGAACAACCGCATCATCGAGGAGACG,Promoter (<=1kb),1,74236084,74236888,805,1,Arpc2-204,734,Arpc2-204;Arpc2-203;Arpc2-201;Arpc2-202,Arpc2;Arpc2;Arpc2;Arpc2,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,6,76709,ENSMUSG00000006304,conserved gene but different region,1,74236248,74237193,946,*,946,100,0.695560254,0.886431784,0.105708245,2.03E-78,CpGisland,TRUE,U1,Pr-A
10104,cg15982700,0.000140665,0.0000145,9.679934534,1.55E-19,gain,yes,-0.0000332,0.0000247,-1.346484669,0.179129917,neg,ns,0.018180209,0.007232539,2.513669016,0.012454882,pos,ns,1.904660377,-0.000542712,0.000248726,-2.181964108,0.029862795,neg,ns,0.169823072,Gm28308,Gm28308_Intron,6,52177051,52177100,52177099,52177100,50,+,TGCATACCAATGGTTTTTGTCATTTATGGCTGGGCAAGATTTATGACTCG,"Intron (Hoxaas3-203/Hoxaas3-203, intron 1 of 1)",6,52163359,52213339,49981,2,Gm28308-201,36239,Gm28308-201;Hoxa3-201;Hoxa3-202;Hoxa3-204,Gm28308;Hoxa3;Hoxa3;Hoxa3,0;0;0;7774,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,46,103,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
8615,cg06881444,-0.0000114,0.00000202,-5.65156723,3.61E-08,loss,yes,0.00000462,0.00000343,1.346462647,0.179137007,pos,ns,0.000510894,0.001006307,0.50769216,0.612030262,pos,ns,0.213227104,-0.00000506,0.0000346,-0.14614469,0.883902155,neg,ns,0.9535783,Btrc,Btrc_Exon,19,45446971,45447020,45446971,45446972,50,+,CGAGGCAGCAGCAATAACAAGTCAAATTTGCATAGAGAATTGCTCGAATC,"Exon (Btrc-208/Btrc, exon 1 of 1)",19,45363734,45507736,144003,1,Btrc-204,83237,Btrc-204;Btrc-201;Btrc-210;Btrc-202;Btrc-203;Btrc-208;Btrc-205;Btrc-209;Gm6807-201,Btrc;Btrc;Btrc;Btrc;Btrc;Btrc;Btrc;Btrc;Gm6807,0;0;0;0;0;0;0;0;4175,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,30,98,12234,ENSMUSG00000025217,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13294,cg12520505,-0.000000985,0.00000138,-0.711995267,0.477003184,loss,ns,0.00000316,0.00000235,1.346452868,0.179140155,pos,ns,-0.000115461,0.000688214,-0.167768907,0.866874478,neg,ns,0.062043783,-0.0000159,0.0000237,-0.67063838,0.502950248,neg,ns,0.961174906,Mau2,Mau2_Exon,8,70023588,70023637,70023636,70023637,50,+,CGAACATGAAGCATGTCACCTACTACCTCTTGGTGTCTATTTCCTTCCCG,"Exon (Mau2-202/Mau2, exon 13 of 19)",8,70016123,70042685,26563,2,Mau2-202,19048,Mau2-202;Mau2-201;Mau2-205;Mau2-204;Mau2-208;Mau2-206;Mau2-203,Mau2;Mau2;Mau2;Mau2;Mau2;Mau2;Mau2,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,74549,ENSMUSG00000031858,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17678,cg23693510,0.0000334,0.00000636,5.246534426,0.000000288,gain,yes,0.0000146,0.0000108,1.346343652,0.17917532,pos,ns,0.011923267,0.003167144,3.764675123,0.000199467,pos,ns,3.700128453,-0.000211571,0.000108918,-1.942484626,0.052983812,neg,ns,0.128514452,Elavl2,Elavl2_Promoter,4,91375843,91375892,91375891,91375892,50,+,CTTCATATTCTGTATTCCGCTCACTTACAGGTTTTCTGGGTTTGCCAGCG,Promoter (<=1kb),4,91250763,91376463,125701,2,Elavl2-208,571,Elavl2-204;Elavl2-201;Elavl2-207;Elavl2-208;Elavl2-202;Elavl2-209;Elavl2-203;Elavl2-205;Elavl2-215;Elavl2-212;Elavl2-214;Elavl2-211,Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,4,31,15569,ENSMUSG00000008489,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
2647,cg03894805,-0.00000086,0.00000175,-0.490935361,0.623819517,loss,ns,-0.00000401,0.00000298,-1.346282274,0.179195085,neg,ns,0.000798853,0.000872042,0.916070914,0.360341763,pos,ns,0.443285401,-0.000037,0.00003,-1.233215548,0.218429645,neg,ns,0.960967242,Arhgap21,Arhgap21_Exon,2,20861030,20861079,20861078,20861079,50,-,GGCTCTGATTTAGCACCAAGCAAAGTTTGCCTGATGCTGAGACTCTGGCG,"Exon (Arhgap21-210/Arhgap21, exon 15 of 25)",2,20847919,20967721,119803,2,Arhgap21-210,106642,Arhgap21-210;Arhgap21-201;Arhgap21-213;Arhgap21-208;Arhgap21-217;Arhgap21-203;Arhgap21-218;Arhgap21-216;Arhgap21-211,Arhgap21;Arhgap21;Arhgap21;Arhgap21;Arhgap21;Arhgap21;Arhgap21;Arhgap21;Arhgap21,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,4,71435,ENSMUSG00000036591,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3079,cg07031988,-0.0000458,0.00000653,-7.013411816,1.46E-11,loss,yes,0.0000149,0.0000111,1.346253349,0.1792044,pos,ns,-0.006241371,0.003248342,-1.921402351,0.055597711,neg,ns,1.254943085,0.000154197,0.00011171,1.380326677,0.168480607,pos,ns,0.938929604,Lrmda,Lrmda_Intron,14,22573882,22573931,22573882,22573883,50,+,CGAGGATAGGGTTAATTACAGTGGAAACTTAAAAGTTCTCTCCGTTTGAA,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,554170,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206;Lrmda-202;Lrmda-205,Lrmda;Lrmda;Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22833,cg20646588,-0.0000372,0.00000542,-6.851773143,3.94E-11,loss,yes,0.0000124,0.00000921,1.346230349,0.179211807,pos,ns,-0.004523439,0.002699051,-1.67593694,0.094758762,neg,ns,1.023380624,0.0000327,0.0000928,0.35252498,0.72468414,pos,ns,0.917123535,Meis2,Meis2_Intron,2,116001090,116001139,116001138,116001139,50,-,ACTCTTCTGGCAAGGCATTGCAGGACCCCTACTTTCTTAAAATTCATACG,"Intron (Meis2-201/Meis2, intron 7 of 11)",2,115863064,116065047,201984,2,Meis2-201,63908,Meis2-201;Meis2-203;Meis2-205;Meis2-206;Meis2-204;Meis2-202;Meis2-216;Meis2-217;Meis2-213,Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,45,97,17536,ENSMUSG00000027210,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12947,cg07564343,0.0000427,0.00000798,5.342484388,0.000000178,gain,yes,-0.0000183,0.0000136,-1.346097743,0.179254517,neg,ns,0.015984615,0.003973597,4.022706465,0.0000723,pos,ns,4.140622115,-0.000620388,0.000136652,-4.539919035,0.00000806,neg,ns,0.110747215,Rora,Rora_Intron,9,68655809,68655858,68655809,68655810,50,-,CGAGCGGGTTATGTAACAGGGTTAATCAGAAACACTGGAGAAAATCCCCT,"Intron (Rora-204/Rora, intron 1 of 2)",9,68653786,68664967,11182,1,Rora-204,2023,Rora-204;Rora-201;Rora-206;Rora-205,Rora;Rora;Rora;Rora,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,19,19883,ENSMUSG00000032238,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
1201,cg11164166,-0.00000285,0.00000261,-1.09238509,0.275512081,loss,ns,0.00000597,0.00000444,1.346039737,0.179273202,pos,ns,0.002746667,0.001300123,2.112621366,0.035432465,pos,ns,1.45059863,-0.000111049,0.0000447,-2.483710097,0.013530339,neg,ns,0.935847284,Bcor,Bcor_Exon,X,12058681,12058730,12058729,12058730,50,-,CTGCTGAGGTAGCAAGGCCTTGTACATGTTCAGTGAATACTTATTTGGCG,"Exon (Bcor-202/Bcor, exon 4 of 15)",20,12036740,12080553,43814,2,Bcor-202,21823,Bcor-202;Bcor-203;Bcor-204;Bcor-206;Bcor-201;Bcor-207;Bcor-205,Bcor;Bcor;Bcor;Bcor;Bcor;Bcor;Bcor,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,14,74,71458,ENSMUSG00000040363,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21667,cg15136978,0.00000279,0.00000343,0.812630596,0.417053504,gain,ns,-0.00000784,0.00000582,-1.345836721,0.179338609,neg,ns,-0.000311888,0.001706003,-0.182817861,0.855060437,neg,ns,0.068003188,-0.0000494,0.0000587,-0.842362352,0.400234564,neg,ns,0.962177008,Zfhx3,Zfhx3_Exon,8,108794692,108794741,108794692,108794693,50,+,CGTGGCCAGGAACCTCCGCATTCACATGACCAGTGAGAAGCACATGCATA,"Exon (Zfhx3-204/Zfhx3, exon 8 of 16)",8,107942644,108961630,1018987,1,Zfhx3-204,852048,Zfhx3-204;Zfhx3-202;Zfhx3-201,Zfhx3;Zfhx3;Zfhx3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,46,177,11906,ENSMUSG00000038872,conserved gene and region,8,108794491,108794709,219,*,219,21,0.666666667,0.876333842,0.095890411,6.34E-16,CpGisland,TRUE,U10,Tr-S
17941,cg00994804,0.000240426,0.0000223,10.76897801,3.48E-23,gain,yes,-0.000051,0.0000379,-1.345819652,0.179344109,neg,ns,0.028888089,0.011111772,2.599773408,0.009775042,pos,ns,2.009881382,-0.001439508,0.000382133,-3.767034485,0.000197674,neg,ns,0.37833304,Runx1,Runx1_fiveUTR,16,92695727,92695776,92695727,92695728,50,-,CGTGCTGGCATCTACGGGGATACGCATCACAACAAGCCGATTGAGTTAGG,5' UTR,16,92601466,92826149,224684,2,Runx1-201,130373,Runx1-201;Runx1-202;Runx1-203;Runx1-205;Runx1-206;Runx1-204,Runx1;Runx1;Runx1;Runx1;Runx1;Runx1,0;0;0;-232;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,7,10,12394,ENSMUSG00000022952,mapped to different genes,16,92695398,92695878,481,*,481,36,0.636174636,0.74,0.074844075,5.11E-23,CpGisland,TRUE,U3,Pr-B
23860,cg11260565,0.000103036,0.000012,8.550706422,5.69E-16,gain,yes,0.0000276,0.0000205,1.345802027,0.179349789,pos,ns,0.011886725,0.005997397,1.981980704,0.048364279,pos,ns,1.315475285,-0.0000858,0.00020625,-0.415910888,0.677762982,neg,ns,0.370279702,En1,En1_threeUTR,1,120607906,120607955,120607906,120607907,50,-,CGAGACTGAACCGCCGCTACAAGCCAAAGATTTTATTATGTTCAGAAACC,3' UTR,1,120602418,120607992,5575,1,En1-201,5488,En1-201,En1,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,36,13798,ENSMUSG00000058665,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
4430,cg10730977,-0.0000155,0.00000531,-2.92065102,0.003749282,loss,ns,0.0000122,0.00000903,1.345788053,0.179354292,pos,ns,-0.009035433,0.002645121,-3.415887044,0.000720484,neg,ns,3.142375578,0.0003385,0.000091,3.721193774,0.000235385,pos,ns,0.861477114,Rnf32,Rnf32_Intron,5,28892949,28892998,28892949,28892950,50,-,CGGTGTGACAGAAATTGTTTTTTAAGTAGTTGCCCTCTGAAAATATTACC,"Intron (9530036O11Rik-201/9530036O11Rik-201, intron 5 of 6)",5,29195992,29203135,7144,1,Rnf32-207,-303043,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,2,56874,ENSMUSG00000029130,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23671,cg16531937,-0.00000407,0.0000022,-1.846999531,0.065700032,loss,ns,-0.00000503,0.00000374,-1.345669604,0.179392464,neg,ns,-0.000658989,0.001095757,-0.601401126,0.54801237,neg,ns,0.261209638,0.0000395,0.0000377,1.049526587,0.294753334,pos,ns,0.950380211,Ptbp2,Ptbp2_Exon,3,119724637,119724686,119724637,119724638,50,-,CGTAACCATCTTTAGAAGGAGAGAAGAGCAAGCAGCGTAAGACAAGAAGA,"Exon (Ptbp2-201/Ptbp2, exon 10 of 14)",3,119718742,119783388,64647,2,Ptbp2-201,58702,Ptbp2-201;Ptbp2-213;Ptbp2-208;Ptbp2-206;Ptbp2-204;Ptbp2-211;Ptbp2-202,Ptbp2;Ptbp2;Ptbp2;Ptbp2;Ptbp2;Ptbp2;Ptbp2,0;0;0;0;0;-250;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,13,56195,ENSMUSG00000028134,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12720,cg22342392,0.0000568,0.00000559,10.15037813,4.34E-21,gain,yes,0.0000128,0.0000095,1.345601035,0.179414565,pos,ns,0.009560967,0.002784444,3.433707627,0.000676374,pos,ns,3.169812922,0.0000526,0.0000958,0.549659148,0.582948941,pos,ns,0.116032097,Shox2,Shox2_Exon,3,66973872,66973921,66973872,66973873,50,-,CGCCACAGCGCTGTCCAGCTGCAGCTGCGCCTGAACCTGAAAGGACAAGG,"Exon (Shox2-203/Shox2, exon 5 of 5)",3,66971727,66981318,9592,2,Shox2-203,7397,Shox2-203;Shox2-201;Shox2-202;Shox2-204;Shox2-205,Shox2;Shox2;Shox2;Shox2;Shox2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,7,20429,ENSMUSG00000027833,conserved gene and region,3,66973394,66973929,536,*,536,59,0.695895522,0.934184096,0.110074627,1.14E-47,CpGisland,TRUE,U3,Pr-B
21806,cg22741302,-0.000000665,0.00000131,-0.507176801,0.612391363,loss,ns,0.000003,0.00000223,1.345497455,0.179447953,pos,ns,0.001357851,0.000652949,2.079565837,0.03838695,pos,ns,1.415816398,-0.0000207,0.0000225,-0.923443069,0.35649455,neg,ns,0.960940333,Gm1943,Gm1943_Intron,8,109187732,109187781,109187780,109187781,50,-,TTTCAGAAGCGGCTTGTCTTATTCACTCAGCAGCAAAATAATCATATGCG,"Intron (D030068K23Rik-202/D030068K23Rik-202, intron 5 of 9)",8,109340691,109340864,174,2,Gm1943-201,153132,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,28,384864,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11198,cg16895007,0.0000727,0.00000886,8.202434929,6.34E-15,gain,yes,0.0000202,0.000015,1.345425547,0.179471135,pos,ns,0.02119519,0.004408685,4.807598919,0.00000239,pos,ns,5.622360541,-0.000426302,0.000151614,-2.811753536,0.005241214,neg,ns,0.074895191,Satb2,Satb2_fiveUTR,1,56969798,56969847,56969798,56969799,50,+,CGGGCTCTCGCTCCGCCGCTCCATGCTGCTCCGACTCGGAGACAAAGTTC,Promoter (<=1kb),1,56948134,56969840,21707,2,Satb2-203,0,Satb2-201;Satb2-202;Satb2-205;Satb2-203;Satb2-204,Satb2;Satb2;Satb2;Satb2;Satb2,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,9,33,212712,ENSMUSG00000038331,conserved gene but different region,1,56969620,56969894,275,*,275,29,0.705454546,0.850848181,0.105454546,4.32E-23,CpGisland,TRUE,U3,Pr-B
6770,cg16987712,-0.000000916,0.00000917,-0.099964964,0.920436757,loss,ns,0.0000209,0.0000156,1.344781512,0.179678862,pos,ns,-0.006923334,0.004561759,-1.51768959,0.13011178,neg,ns,0.885683382,0.00033675,0.000156879,2.146564571,0.032603702,pos,ns,0.820053442,Lhx2,Lhx2_threeUTR,2,38369640,38369689,38369640,38369641,50,-,CGGTCGCTTTGTTGTTTTAGAATTTTAAGGTGGAAGTCTGTTCGAATATC,3' UTR,2,38350759,38369733,18975,1,Lhx2-201,18881,Lhx2-203;Lhx2-201,Lhx2;Lhx2,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,33,16870,ENSMUSG00000000247,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
8277,cg27232037,-0.000162078,0.0000235,-6.896750488,2.99E-11,loss,yes,0.0000537,0.0000399,1.344689437,0.179708574,pos,ns,-0.002271364,0.011696536,-0.194191174,0.846153384,neg,ns,0.072550904,-0.000499356,0.000402243,-1.241430149,0.215385397,neg,ns,0.411768632,Ebf1,Ebf1_Intron,11,44926354,44926403,44926402,44926403,50,-,CACAGAGGCCAAATGTTTTCTCTGAGAAGTTTGGACTCTGTTTTTGGCCG,"Intron (Ebf1-203/Ebf1, intron 10 of 15)",11,44617317,45004995,387679,1,Ebf1-203,309037,Ebf1-203;Ebf1-202;Ebf1-201;Ebf1-206,Ebf1;Ebf1;Ebf1;Ebf1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,80,13591,ENSMUSG00000057098,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23884,cg20356598,-0.00000571,0.00000915,-0.624255309,0.532919056,loss,ns,0.0000209,0.0000155,1.344683412,0.179710519,pos,ns,-0.005791293,0.004553602,-1.271804912,0.204395717,neg,ns,0.689528209,0.000234475,0.000156598,1.49730718,0.13533082,pos,ns,0.842565023,Gm29344,Gm29344_Intergenic_upstream,1,120910913,120910962,120910961,120910962,50,+,TGACCCTTAATAGGACCCTGTCACTGGTGAGGTGATTTATGCCTCCTGCG,Distal Intergenic,1,120825247,120825456,210,2,Gm29344-201,-85457,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,7,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22643,cg20971998,-0.0000207,0.00000645,-3.200672203,0.001513198,loss,ns,0.0000147,0.000011,1.344461827,0.17978204,pos,ns,-0.000235449,0.003212029,-0.073302408,0.941612749,neg,ns,0.02612767,0.0000363,0.000110461,0.328698917,0.742605205,pos,ns,0.885699943,BC052040,BC052040_Intergenic_upstream,2,115538629,115538678,115538629,115538630,50,+,CGATTAATCCCACAAATTTGTTCACACGATGCACATTGTTTAGGGCAATT,Distal Intergenic,2,115581716,115778768,197053,1,BC052040-203,-43038,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,9,49,399568,ENSMUSG00000040282,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6704,cg16990312,0.0000228,0.00000408,5.585572556,0.000000051,gain,yes,-0.00000932,0.00000693,-1.344222256,0.17985939,neg,ns,-0.004522704,0.002030542,-2.227338676,0.026642378,neg,ns,1.574427021,0.0000764,0.0000698,1.094315875,0.274666011,pos,ns,0.898216551,Nsg1,Nsg1_Exon,5,38138783,38138832,38138831,38138832,50,+,GTGGTTTATGACTGTGTAAAATTTCTCCCGGGCACTGGAGTCTTGCTCCG,Promoter (<=1kb),5,38138135,38138829,695,2,Nsg1-206,0,Nsg1-201;Nsg1-206;Nsg1-205;Nsg1-204;Stx18-203;Stx18-201;Stx18-202;Stx18-207;Stx18-204,Nsg1;Nsg1;Nsg1;Nsg1;Stx18;Stx18;Stx18;Stx18;Stx18,0;0;0;0;100041;99550;99532;99500;4388,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,18196,ENSMUSG00000029126,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12569,cg26489754,-0.00000661,0.00000289,-2.289392569,0.022728484,loss,ns,-0.00000659,0.0000049,-1.34418891,0.179870158,neg,ns,-0.003240047,0.001436099,-2.256144528,0.02475814,neg,ns,1.606281978,0.0000361,0.0000494,0.731906322,0.464778688,pos,ns,0.959327156,Tjp1,Tjp1_threeUTR,7,65299661,65299710,65299709,65299710,50,+,ACAGCATACCCGACGAGGAGTCGGATGATTTTAGAGCAAAAGACCAACCG,3' UTR,7,65296165,65371239,75075,2,Tjp1-202,71529,Tjp1-202;Tjp1-201;Tjp1-207;Tjp1-203,Tjp1;Tjp1;Tjp1;Tjp1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,13,21872,ENSMUSG00000030516,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4948,cg22862920,0.0000119,0.00000332,3.582307689,0.000395312,gain,ns,-0.00000758,0.00000564,-1.344116153,0.179893655,neg,ns,0.000904876,0.001653056,0.547395447,0.58450095,pos,ns,0.233214779,-0.00000665,0.0000568,-0.117044014,0.906900967,neg,ns,0.925442622,Ass1,Ass1_Intron,2,31516709,31516758,31516757,31516758,50,-,TTTCTTTTTGATTTCTACATCGCTGACTTGAAAGCCCTTGAGTGACAGCG,"Intron (Ass1-201/Ass1, intron 14 of 15)",2,31470207,31520672,50466,1,Ass1-201,46502,Ass1-201;Ass1-204;Ass1-203,Ass1;Ass1;Ass1,0;0;-1732,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,9,11898,ENSMUSG00000076441,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9705,cg23600198,0.0000808,0.00000818,9.876119078,3.53E-20,gain,yes,-0.0000187,0.0000139,-1.3440518,0.17991444,neg,ns,0.012116008,0.004069533,2.97724764,0.003137745,pos,ns,2.503382374,-0.000292917,0.000139951,-2.093000598,0.037161695,neg,ns,0.184079839,Gm7481,Gm7481_Intron,12,50120935,50120984,50120935,50120936,50,+,CGTAAAATAAGGGTGAAGAGCCATTGTCTAATGCAGCCTTTTTCAAAGAG,"Intron (Gm40418-201/Gm40418-201, intron 1 of 2)",12,49840757,49841751,995,2,Gm7481-201,-279184,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,37,665077,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14829,cg24855432,-0.00000836,0.00000726,-1.151296067,0.250497648,loss,ns,0.0000166,0.0000123,1.343996322,0.17993236,pos,ns,0.001940585,0.003614613,0.536872109,0.591741054,pos,ns,0.227868299,-0.0000933,0.000124306,-0.750895251,0.453285303,neg,ns,0.646025803,Fam172a,Fam172a_Intron,13,77893114,77893163,77893114,77893115,50,-,CGATTGGACAATTGAAAGATTTAATGAGATACTGCCAGTTACTCATAATA,"Intron (Fam172a-203/Fam172a, intron 6 of 10)",13,77708690,78163655,454966,1,Fam172a-203,184424,Fam172a-203;Fam172a-201;Fam172a-202;Fam172a-209;Fam172a-205;Fam172a-207;Fam172a-208,Fam172a;Fam172a;Fam172a;Fam172a;Fam172a;Fam172a;Fam172a,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,24,68675,ENSMUSG00000064138,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6102,cg08390357,0.0000157,0.00000786,2.00113102,0.04624973,gain,ns,0.0000179,0.0000133,1.343764217,0.180007346,pos,ns,0.006509568,0.003909521,1.665055029,0.09691205,pos,ns,1.013622219,-0.000104611,0.000134448,-0.778079775,0.437115424,neg,ns,0.642822278,Nrg2,Nrg2_threeUTR,18,36038223,36038272,36038271,36038272,50,-,TCACTTACTTGCAGGAGAGCTGGTTGATGCCCTCGATGTAGTAGCAGACG,3' UTR,18,36017652,36197380,179729,2,Nrg2-203,159108,Nrg2-203;Nrg2-206;Nrg2-205;Nrg2-204;Nrg2-201,Nrg2;Nrg2;Nrg2;Nrg2;Nrg2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,20,100042150,ENSMUSG00000060275,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
47,cg02551882,-0.000000687,0.000000585,-1.175219278,0.240808851,loss,ns,-0.00000133,0.000000993,-1.343651552,0.180043753,neg,ns,-0.000419312,0.000290937,-1.441245337,0.150524724,neg,ns,0.822392162,0.0000134,0.00001,1.335842502,0.182580615,pos,ns,0.012467104,Tug1,Tug1_Exon,11,3648816,3648865,3648816,3648817,50,+,CGCCCCAAGAGCTGGATGCCAGAGCAGGAGAAAGAGCCGCCAACCGATCG,Promoter (<=1kb),11,3646840,3649042,2203,2,Tug1-204,177,Morc2a-202;Morc2a-201;Morc2a-206;Tug1-201;Tug1-203;Tug1-202;Tug1-207;Tug1-206;Tug1-208;Tug1-204;Tug1-205,Morc2a;Morc2a;Morc2a;Tug1;Tug1;Tug1;Tug1;Tug1;Tug1;Tug1;Tug1,0;0;0;-1280;-1286;-4;-910;-1534;-1684;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,544752,ENSMUSG00000056579,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
9657,cg02070745,-0.00000521,0.00000248,-2.099418935,0.036588249,loss,ns,0.00000566,0.00000421,1.343580708,0.180066648,pos,ns,0.001238622,0.00123429,1.003510019,0.316397497,pos,ns,0.49976696,-0.0000599,0.0000424,-1.410565028,0.159375558,neg,ns,0.933595562,Iars,Iars_Exon,13,49706742,49706791,49706790,49706791,50,-,AATTTCCAGAAACAGATACTGGGGCACCCCCATCCCACTGTGGGTCAGCG,"Exon (Iars-206/Iars, exon 14 of 34)",13,49682100,49734267,52168,1,Iars-206,24642,Iars-206;Iars-201;Iars-202;Iars-208;Iars-204;Iars-203,Iars;Iars;Iars;Iars;Iars;Iars,0;0;0;0;0;-1425,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,105148,ENSMUSG00000037851,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20997,cg05433621,-0.0000423,0.00000743,-5.698890195,2.81E-08,loss,yes,-0.000017,0.0000126,-1.343447162,0.180109814,neg,ns,-0.01520209,0.003697593,-4.111347513,0.0000504,neg,ns,4.297346588,0.000248233,0.00012716,1.952135967,0.051822065,pos,ns,0.87334684,Tanc2,Tanc2_threeUTR,11,105923486,105923535,105923534,105923535,50,+,CTGGAGGACGATTATTACAGCCCCCATGGGATGCTGGCTAACGGGTCTCG,3' UTR,11,105589991,105929304,339314,1,Tanc2-202,333495,Tanc2-202;Tanc2-204;Tanc2-201,Tanc2;Tanc2;Tanc2,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,20,77097,ENSMUSG00000053580,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10806,cg03061422,0.0000616,0.0000149,4.130479731,0.0000466,gain,ns,0.0000341,0.0000253,1.343446769,0.180109941,pos,ns,0.038800635,0.007426326,5.22474138,0.000000321,pos,ns,6.493788316,-0.000219839,0.000255391,-0.860794609,0.390016442,neg,ns,0.606259714,Vti1a,Vti1a_Intron,19,55481456,55481505,55481456,55481457,50,-,CGGCAAGAGACCTCATAAATATGCTGCCATTACCCACTGCTAATTCGTAT,"Intron (Vti1a-206/Vti1a, intron 5 of 7)",19,55316295,55577001,260707,1,Vti1a-206,165161,Vti1a-206;Vti1a-202;Vti1a-201,Vti1a;Vti1a;Vti1a,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,32,53611,ENSMUSG00000024983,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3572,cg26915360,0.0000383,0.00001,3.81348176,0.000165332,gain,ns,-0.0000229,0.000017,-1.343439602,0.180112258,neg,ns,0.011797415,0.004992875,2.362850129,0.018752209,pos,ns,1.726947563,-0.000112375,0.000171705,-0.65446667,0.513296449,neg,ns,0.248851773,Mms22l,Mms22l_Intron,4,24556335,24556384,24556383,24556384,50,+,TTGCACGTCCTAAGGGGTTTACAACAGAAACTGTTTATTGAGTATCATCG,"Intron (Mms22l-210/Mms22l, intron 13 of 16)",4,24496451,24581338,84888,1,Mms22l-210,59884,Mms22l-210;Mms22l-202;Mms22l-201;Mms22l-207;Mms22l-204;Mms22l-208,Mms22l;Mms22l;Mms22l;Mms22l;Mms22l;Mms22l,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,212377,ENSMUSG00000045751,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14026,cg05758851,-0.00000696,0.00000277,-2.516676794,0.012351229,loss,ns,0.00000631,0.0000047,1.343384941,0.180129928,pos,ns,0.000740449,0.001377123,0.537678442,0.591184832,pos,ns,0.228276717,-0.000099,0.0000474,-2.090220562,0.037412453,neg,ns,0.941702164,Lnpk,Lnpk_Intergenic_downstream,2,74272767,74272816,74272815,74272816,50,-,TGAAACTTTCCGTCTATTAAATCTTAACAGGCATAACTATAAAAATGGCG,Distal Intergenic,2,74520341,74533106,12766,2,Lnpk-204,260339,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,15,16,69605,ENSMUSG00000009207,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17036,cg22531240,0.000063,0.0000126,5.005730339,0.000000935,gain,yes,-0.0000287,0.0000214,-1.34336095,0.180137684,neg,ns,0.015418569,0.006267209,2.460197172,0.01443134,pos,ns,1.840693335,-0.0001859,0.000215529,-0.862531208,0.389062024,neg,ns,0.04896825,Mllt3,Mllt3_Exon,4,88031515,88031564,88031563,88031564,50,-,GAGCCCTACCTCTTTTTGGCCTAGGAAAGCTTTCGTGCAAGTGGAAGACG,"Exon (Mllt3-201/Mllt3, exon 2 of 11)",4,87769925,88033364,263440,2,Mllt3-201,1800,Mllt3-201;Mllt3-203;Mllt3-205;Mllt3-206,Mllt3;Mllt3;Mllt3;Mllt3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,13,70122,ENSMUSG00000028496,conserved gene but different region,4,88031274,88031627,354,*,354,40,0.641242938,1.102803738,0.11299435,5.51E-33,CpGisland,TRUE,NA,NRS
1315,cg20188742,0.000064,0.00000666,9.613223298,2.56E-19,gain,yes,-0.0000152,0.0000113,-1.343233112,0.180179017,neg,ns,0.007567332,0.003313319,2.283912861,0.023052653,pos,ns,1.637279081,0.00009,0.000113945,0.789543737,0.43039775,pos,ns,0.119709801,Fezf2,Fezf2_Exon,14,12342678,12342727,12342726,12342727,50,-,CCTGGTGGAAGGCCTTGTTGCAGATGGTACATTTGTACTGCTTCTCGCCG,"Exon (Fezf2-203/Fezf2, exon 4 of 4)",14,12342094,12345844,3751,2,Fezf2-203,3117,Fezf2-203;Fezf2-201;Fezf2-202,Fezf2;Fezf2;Fezf2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,45,54713,ENSMUSG00000021743,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
7857,cg13690410,-0.0000103,0.0000065,-1.583742067,0.114272027,loss,ns,0.0000148,0.000011,1.343134839,0.180210796,pos,ns,0.003634076,0.003233909,1.123741066,0.26199234,pos,ns,0.581711407,-0.000143831,0.000111214,-1.293279242,0.196877386,neg,ns,0.850743125,Gtdc1,Gtdc1_threeUTR,2,44565039,44565088,44565039,44565040,50,-,CGTGTCGGCGAAAAGAAAGAATTCAGGCACCATGTCATCCAGTACAAAGG,3' UTR,2,44564412,44861622,297211,2,Gtdc1-203,296534,Gtdc1-203;Gtdc1-201;Gtdc1-207,Gtdc1;Gtdc1;Gtdc1,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,43,227835,ENSMUSG00000036890,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9073,cg20346209,-0.00000914,0.00000705,-1.296626491,0.195724058,loss,ns,0.0000161,0.000012,1.343050242,0.180238155,pos,ns,0.001809379,0.003508628,0.515694241,0.606435561,pos,ns,0.21721534,0.0000231,0.000120661,0.191383515,0.848350423,pos,ns,0.898928882,Nova1,Nova1_Intron,12,46766403,46766452,46766451,46766452,50,+,TGCGCTGTTAAACAGTTGCTGCGTTCCACCTCAGAAGTGGCTGCAATTCG,"Intron (Nova1-201/Nova1, intron 2 of 4)",12,46694517,46818929,124413,2,Nova1-201,52477,Nova1-201;Nova1-203;Nova1-202;Nova1-205,Nova1;Nova1;Nova1;Nova1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,24,664883,ENSMUSG00000021047,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14587,cg01902998,-0.00000277,0.00000164,-1.685065886,0.092982209,loss,ns,0.00000374,0.00000279,1.342972984,0.180263144,pos,ns,0.001209915,0.000816785,1.481313755,0.139538679,pos,ns,0.855305393,0.00000324,0.0000281,0.115391687,0.908209376,pos,ns,0.056852352,Sptb,Sptb_fiveUTR,12,76710049,76710098,76710049,76710050,50,-,CGCGGACCCGCCCAGAGATATAAATAACATTATCTGAGGAGGGACATTCC,Promoter (<=1kb),12,76580488,76710547,130060,2,Sptb-201,449,Sptb-201;Sptb-202,Sptb;Sptb,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,6,20741,ENSMUSG00000021061,conserved gene but different region,12,76709477,76710058,582,*,582,58,0.743986254,0.728756477,0.099656357,3.86E-44,CpGisland,TRUE,NA,NRS
19490,cg04882273,0.0000665,0.00000666,9.992327936,1.46E-20,gain,yes,-0.0000152,0.0000113,-1.342969622,0.180264232,neg,ns,0.006790978,0.003313151,2.049703658,0.041234469,pos,ns,1.384739591,-0.000211333,0.000113939,-1.854787626,0.064575911,neg,ns,0.063263796,Cdh8,Cdh8_fiveUTR,8,99416414,99416463,99416462,99416463,50,-,CCCGCCTGCCTGCCAAATGTAACTGTGAAGTGATGTGGAAAAGTGAGCCG,Promoter (<=1kb),8,99024471,99416427,391957,2,Cdh8-207,0,Cdh8-207;Cdh8-204;Cdh8-201;Cdh8-206;Cdh8-203;Cdh8-205,Cdh8;Cdh8;Cdh8;Cdh8;Cdh8;Cdh8,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,16,12564,ENSMUSG00000036510,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
23869,cg25452671,0.0000105,0.0000114,0.925144698,0.355610251,gain,ns,-0.000026,0.0000194,-1.342824756,0.180311095,neg,ns,-0.005858921,0.005674985,-1.032411798,0.302684006,neg,ns,0.519010526,-0.00010189,0.000195162,-0.522080396,0.6019872,neg,ns,0.581134274,Kcnq4,Kcnq4_Intron,4,120708842,120708891,120708890,120708891,50,-,GCGAGGGGGTACCTCGGTCTCCAGCTGGCGTGGATCCGAAAGAAACTCCG,"Intron (Kcnq4-201/Kcnq4, intron 9 of 13)",4,120696138,120747248,51111,2,Kcnq4-201,38357,Kcnq4-201,Kcnq4,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,5,60613,ENSMUSG00000028631,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27477,cg06392591,-0.00000697,0.0000026,-2.679152559,0.007774892,loss,ns,-0.00000593,0.00000442,-1.342818047,0.180313266,neg,ns,-0.001104122,0.001294292,-0.853070021,0.394279108,neg,ns,0.404196235,-0.0000029,0.0000445,-0.065257595,0.948010967,neg,ns,0.930264843,Pbx1,Pbx1_Intron,1,168342011,168342060,168342059,168342060,50,-,GAGCAGAGCAGCCACAGCGGAATTCATTAGGCTCAACACTGCAGGGCCCG,"Intron (Pbx1-208/Pbx1, intron 2 of 7)",1,168119364,168432270,312907,2,Pbx1-208,90210,Pbx1-208;Pbx1-205;Pbx1-206;Pbx1-201;Pbx1-202;Pbx1-204,Pbx1;Pbx1;Pbx1;Pbx1;Pbx1;Pbx1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,84,18514,ENSMUSG00000052534,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3126,cg07600301,-0.0000168,0.00000438,-3.833426366,0.00015304,loss,ns,0.00000998,0.00000744,1.342771887,0.1803282,pos,ns,-0.004693403,0.002178299,-2.154618275,0.031961788,neg,ns,1.495368929,-0.0000192,0.0000749,-0.255776075,0.798293382,neg,ns,0.932346317,Ptprz1,Ptprz1_Intron,6,22890108,22890157,22890108,22890109,50,+,CGGTGGGAGAATCTACTTTTTGGCCTGCACAGCGGATGCACCATTTCTAT,"Intron (Ptprz1-201/Ptprz1, intron 1 of 29)",6,22875502,23052916,177415,1,Ptprz1-201,14606,Ptprz1-201;Ptprz1-206;Ptprz1-204,Ptprz1;Ptprz1;Ptprz1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,4,19283,ENSMUSG00000068748,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21074,cg21831652,-0.0000373,0.00000656,-5.688753893,2.96E-08,loss,yes,0.000015,0.0000111,1.34270009,0.180351431,pos,ns,0.0000197,0.003264625,0.006031373,0.99519157,pos,ns,0.002093312,0.0000108,0.00011227,0.096513144,0.923175399,pos,ns,0.932006794,Scn4a,Scn4a_Exon,11,106335410,106335459,106335410,106335411,50,+,CGGTGAGGCACATGGCTTGGCCGGCCACCTCCATGCAGTCCCACATGGTC,"Exon (Scn4a-201/Scn4a, exon 13 of 24)",11,106318592,106349389,30798,2,Scn4a-201,13930,Scn4a-201,Scn4a,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,110880,ENSMUSG00000001027,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
810,cg19507203,-0.00000249,0.000000949,-2.621668929,0.00918176,loss,ns,0.00000216,0.00000161,1.342657905,0.180365082,pos,ns,0.000570849,0.000472182,1.208957838,0.227600317,pos,ns,0.642827138,-0.0000205,0.0000162,-1.2612351,0.208172445,neg,ns,0.971077952,Hnrnpul2,Hnrnpul2_Exon,19,8826011,8826060,8826011,8826012,50,+,CGAGACCTTTTAGTTCAGCAAGCCTCCCAGTGCCTTAGTAAGCTGGTCCA,"Exon (Hnrnpul2-201/Hnrnpul2, exon 9 of 14)",19,8820010,8834143,14134,1,Hnrnpul2-201,6001,Gm50139-201;Hnrnpul2-201;Hnrnpul2-202,Gm50139;Hnrnpul2;Hnrnpul2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,68693,ENSMUSG00000071659,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11120,cg17968333,0.0000101,0.00000839,1.19761596,0.231981472,gain,ns,-0.0000191,0.0000143,-1.342506132,0.1804142,neg,ns,-0.007136805,0.00417751,-1.708387248,0.088565501,neg,ns,1.052735417,0.0000687,0.000143664,0.478039484,0.632959025,pos,ns,0.720199441,Lingo1,Lingo1_Intron,9,56658178,56658227,56658226,56658227,50,+,AAACATTCTTCACACTCCCGCCTCCTTTACTGTTCTGATGCACCAAGACG,"Intron (Lingo1-201/Lingo1, intron 2 of 3)",9,56618475,56685253,66779,2,Lingo1-201,27026,Lingo1-201;Lingo1-206;Lingo1-205;Lingo1-207,Lingo1;Lingo1;Lingo1;Lingo1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,25,235402,ENSMUSG00000049556,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11133,cg07305197,-0.0000177,0.0000116,-1.522759042,0.128838409,loss,ns,0.0000265,0.0000197,1.342379452,0.180455206,pos,ns,0.002454988,0.005775808,0.425046716,0.671097501,pos,ns,0.173214379,0.000159822,0.00019863,0.80462416,0.421653239,pos,ns,0.384585792,Lingo1,Lingo1_Intron,9,56706695,56706744,56706695,56706696,50,-,CGTGGAGCAGAAAATGAGGTTCCAGTTATTAGTTGATTTATTGCTCTGTC,"Intron (Lingo1-206/Lingo1, intron 3 of 6)",9,56618475,56796138,177664,2,Lingo1-206,89394,Lingo1-206;Lingo1-205;Lingo1-207;Lingo1-204;Lingo1-208,Lingo1;Lingo1;Lingo1;Lingo1;Lingo1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,25,235402,ENSMUSG00000049556,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1920,cg09255590,0.000034,0.00000576,5.90127314,9.45E-09,gain,yes,-0.0000131,0.00000979,-1.342200795,0.180513047,neg,ns,0.005484426,0.002868336,1.912058244,0.056790315,pos,ns,1.24572572,-0.000121966,0.0000986,-1.236448281,0.21722794,neg,ns,0.11493378,Gm3148,Gm3148_Intergenic_downstream,6,16317093,16317142,16317093,16317094,50,+,CGGGCTCCCTGCTGCCACTGCTGATCAAATGGAACAACAAGGGCAATGCC,Distal Intergenic,6,16237627,16238238,612,1,Gm3148-201,79466,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,6,100041116,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6528,cg23247981,-0.00000226,0.00000597,-0.379288262,0.704733487,loss,ns,0.0000136,0.0000101,1.341984638,0.180583048,pos,ns,0.001589971,0.002970493,0.535254918,0.592857348,pos,ns,0.227049793,-0.000119596,0.000102155,-1.170726082,0.242608051,neg,ns,0.908019379,Zfp536,Zfp536_Intron,7,37628373,37628422,37628373,37628374,50,-,CGGCTGCAAAGGCCTTATTGTTCCATTATTTCATGAAGCCCAGCTGCCTT,"Intron (Zfp536-202/Zfp536, intron 4 of 6)",7,37479104,37769624,290521,2,Zfp536-202,141202,Zfp536-202;Zfp536-201;Zfp536-203;Zfp536-206;Zfp536-209;Zfp536-208,Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,73,112,243937,ENSMUSG00000043456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19819,cg14594346,-0.0000047,0.00000261,-1.801837222,0.07254245,loss,ns,0.00000594,0.00000443,1.341778659,0.180649772,pos,ns,-0.0000443,0.001298033,-0.034137303,0.972789632,neg,ns,0.011981067,-0.00003,0.0000446,-0.672652684,0.501669354,neg,ns,0.936377398,Nr4a1,Nr4a1_Exon,15,101272179,101272228,101272179,101272180,50,+,CGGCGGGGCCGGCTACCTTCAAAACCCAAGCAGCCCCCAGATGCCTCCCC,"Exon (Nr4a1-202/Nr4a1, exon 5 of 8)",15,101254269,101274795,20527,1,Nr4a1-202,17910,Nr4a1-202;Nr4a1-203;Nr4a1-201;Nr4a1-204,Nr4a1;Nr4a1;Nr4a1;Nr4a1,0;5333;0;-633,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,15370,ENSMUSG00000023034,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19617,cg11225112,-0.0000101,0.00000287,-3.525290396,0.000486828,loss,ns,-0.00000654,0.00000487,-1.341758167,0.180656411,neg,ns,-0.002468495,0.001427513,-1.729228002,0.084763796,neg,ns,1.071789604,0.00000791,0.0000491,0.161161064,0.872071524,pos,ns,0.954967751,Dip2b,Dip2b_Exon,15,100151160,100151209,100151160,100151161,50,-,CGGCCTCTGAGGATGAGGGCTCTCTGAGACGCCAAGCTGCGCTCTCTGCT,"Exon (Dip2b-202/Dip2b, exon 5 of 38)",15,100038664,100219473,180810,1,Dip2b-202,112496,Dip2b-202;Dip2b-201,Dip2b;Dip2b,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,8,239667,ENSMUSG00000023026,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1731,cg17413178,0.0000156,0.00000466,3.343990922,0.000927156,gain,ns,-0.0000106,0.00000792,-1.341608155,0.180705018,neg,ns,-0.002697423,0.002320786,-1.162288461,0.246012329,neg,ns,0.609043127,0.000221658,0.0000798,2.777269,0.005815586,pos,ns,0.078281007,Gm5513,Gm5513_Intergenic_downstream,19,14890903,14890952,14890951,14890952,50,+,TAATGGTGTTCAATGAAGTGTGAGACTTTTAGTTCAGTCTCGCTGAGCCG,Distal Intergenic,19,14959549,14960766,1218,2,Gm5513-201,69814,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,22,433225,NA,mapped to different genes,19,14890943,14890964,22,*,22,5,0.863636364,1.25,0.227272727,0.00000782,CpGisland,TRUE,U13,Hc-P
9265,cg14339272,0.0000028,0.00000219,1.279399647,0.201713111,gain,ns,-0.000005,0.00000372,-1.341590916,0.180710605,neg,ns,-0.000310968,0.001090838,-0.285072613,0.77577887,neg,ns,0.110262054,-0.0000545,0.0000375,-1.453826077,0.147006158,neg,ns,0.946458738,Foxp4,Foxp4_Intron,17,47872472,47872521,47872520,47872521,50,+,CGGCTGGAGTGGAATCTCTTGGAGCGATAATTACAAAGGGCCTAATCACG,"Intron (Foxp4-204/Foxp4, intron 13 of 16)",17,47867133,47924645,57513,2,Foxp4-204,52124,Foxp4-204;Foxp4-203;Foxp4-201;Foxp4-202,Foxp4;Foxp4;Foxp4;Foxp4,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,25,74123,ENSMUSG00000023991,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18199,cg09095372,0.0000543,0.00000824,6.583449855,1.96E-10,gain,yes,0.0000188,0.000014,1.341517878,0.180734274,pos,ns,0.006339352,0.004102151,1.545372483,0.123276402,pos,ns,0.909120051,-0.0000321,0.000141073,-0.227631849,0.820082515,neg,ns,0.45323027,Cacna1g,Cacna1g_Intron,11,94468959,94469008,94469007,94469008,50,-,ATGAGAGACCTGTGCAGTCACATGTCTACTGTTGCTATGGTGACTGTCCG,"Intron (Cacna1g-202/Cacna1g, intron 1 of 35)",11,94408391,94474100,65710,2,Cacna1g-202,5092,Cacna1g-202;Cacna1g-203;Cacna1g-205;Cacna1g-206;Cacna1g-207;Cacna1g-208;Cacna1g-209;Cacna1g-210;Cacna1g-211;Cacna1g-201;Cacna1g-204;Cacna1g-216,Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,18,12291,ENSMUSG00000020866,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18552,cg09595115,0.0000307,0.00000699,4.389564765,0.0000156,gain,ns,0.0000159,0.0000119,1.341442462,0.180758717,pos,ns,0.008163959,0.003478118,2.347234487,0.019542193,pos,ns,1.709026711,0.000114329,0.000119612,0.955832593,0.339901595,pos,ns,0.191091478,Hoxb8,Hoxb8_threeUTR,11,96285285,96285334,96285333,96285334,50,+,GGCGGAAGAGTTACAATAAAGTTTACAAGCGAGAACCCGAGACTGGCCCG,3' UTR,11,96281905,96285315,3411,1,Hoxb8-201,3380,Hoxb7-201;Hoxb7-202;Hoxb8-201;Hoxb8-202;Hoxb8-203,Hoxb7;Hoxb7;Hoxb8;Hoxb8;Hoxb8,0;-3381;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,26,15416,ENSMUSG00000056648,mapped to different genes,11,96285274,96285363,90,*,90,9,0.588888889,1.153846154,0.1,0.00000037,CpGisland,TRUE,U13,Hc-P
6899,cg11292101,-0.000000049,0.00000436,-0.011236941,0.991041635,loss,ns,0.00000995,0.00000741,1.34137195,0.180781573,pos,ns,0.004836441,0.002172298,2.226416666,0.02670469,pos,ns,1.573412465,-0.000153394,0.0000747,-2.053320903,0.040880243,neg,ns,0.538940429,Rims2,Rims2_fiveUTR,15,39391758,39391807,39391758,39391759,50,-,CGACAGCATCTATTCATTGCATGTTTTTAATAGGCTTAGAGAAATATGAG,Promoter (<=1kb),15,39391800,39452232,60433,1,Rims2-211,0,Rims2-202;Rims2-205;Rims2-201;Rims2-211,Rims2;Rims2;Rims2;Rims2,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,19,116838,ENSMUSG00000037386,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22035,cg18877412,0.0000218,0.00001,2.175925756,0.030315749,gain,ns,-0.0000228,0.000017,-1.341366686,0.18078328,neg,ns,-0.010475942,0.004981361,-2.103028014,0.036269137,neg,ns,1.440462779,0.000377251,0.000171309,2.202169125,0.028389417,pos,ns,0.18306541,Elavl4,Elavl4_Intron,4,110285585,110285634,110285585,110285586,50,+,CGCTTTCAGTTGGGCTGCTCGGTCTAATCTTATTTGTTTTACACCCATCA,"Intron (Elavl4-204/Elavl4, intron 1 of 6)",4,110203722,110287527,83806,2,Elavl4-204,1893,Elavl4-204;Elavl4-201;Elavl4-203;Elavl4-202;Elavl4-205;Elavl4-206;Elavl4-207;Elavl4-208;Elavl4-212;Elavl4-209,Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,36,15572,ENSMUSG00000028546,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11518,cg10803271,-0.0000279,0.00000427,-6.536692053,2.59E-10,loss,yes,0.00000974,0.00000726,1.341298403,0.180805415,pos,ns,-0.003714208,0.002126541,-1.746595821,0.081697902,neg,ns,1.087789094,0.0000515,0.0000731,0.703933352,0.482002694,pos,ns,0.931557482,Neo1,Neo1_Exon,9,58888400,58888449,58888400,58888401,50,-,CGCTGGGGTGGCTGGGAGTCAAAGGGCATCATCATTTTTGGTCTCATTCC,"Exon (Neo1-201/Neo1, exon 25 of 29)",9,58874687,59036441,161755,2,Neo1-201,147992,Neo1-201;Neo1-202;Neo1-204,Neo1;Neo1;Neo1,0;0;5485,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,3,18007,ENSMUSG00000032340,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11847,cg26253585,0.0000857,0.0000134,6.386009549,6.22E-10,gain,yes,-0.0000306,0.0000228,-1.341155772,0.180851659,neg,ns,-0.014917082,0.006681898,-2.232461691,0.026298444,neg,ns,1.580069955,0.000819481,0.00022979,3.566219866,0.000419349,pos,ns,0.691781869,Tle3,Tle3_Exon,9,61145158,61145207,61145206,61145207,50,+,TTGGCAGCTTAATTAGTGCAATAATTATGTACTTGTTGCTCCTTCTTTCG,"Exon (I730028E13Rik-201/I730028E13Rik-201, exon 3 of 3)",9,61372366,61418497,46132,1,Tle3-218,-227159,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,30,21887,ENSMUSG00000032280,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27626,cg24878222,0.000000144,0.00000184,0.078263372,0.937669045,gain,ns,0.00000418,0.00000312,1.341087732,0.180873722,pos,ns,0.000847612,0.0009133,0.928076022,0.35409017,pos,ns,0.450886129,0.00000153,0.0000314,0.048643733,0.961234541,pos,ns,0.966273326,Tfap2c,Tfap2c_Intergenic_downstream,2,172713142,172713191,172713142,172713143,50,+,CGCAAAGAAATGTTGAAAGCTTTTAATGAAGAAATTAATTATGTATAGTC,Distal Intergenic,2,172552116,172553518,1403,1,Tfap2c-205,161026,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,2,21420,ENSMUSG00000028640,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14752,cg04722310,-0.00000839,0.00000582,-1.440507507,0.150733065,loss,ns,0.0000133,0.00000989,1.340939256,0.180921874,pos,ns,0.008114016,0.002898544,2.799341697,0.00544173,pos,ns,2.264262981,-0.000264,0.0000997,-2.648454181,0.008500025,neg,ns,0.845254336,Abhd15,Abhd15_Exon,11,77537895,77537944,77537943,77537944,50,+,GATATTTGTGAAGTGACACTCGTGCTTCTGCTCATGCCCTGCTCCGTCCG,"Exon (Taok1-201/Taok1, exon 19 of 19)",11,77515984,77538607,22624,1,Abhd15-202,21911,Abhd15-202;Abhd15-203;Gm12734-201;Taok1-201;Taok1-202,Abhd15;Abhd15;Gm12734;Taok1;Taok1,0;0;-4189;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,6,67477,ENSMUSG00000000686,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18301,cg27650369,0.000151855,0.0000114,13.28819696,3.36E-32,gain,yes,-0.000026,0.0000194,-1.340777219,0.180974436,neg,ns,0.012845249,0.005687724,2.258416255,0.024614602,pos,ns,1.608807177,0.0000446,0.0001956,0.228039626,0.819765774,pos,ns,0.340646064,Gm48316,Gm48316_Intergenic_upstream,13,94706728,94706777,94706728,94706729,50,-,CGCCAGTCCTATCCTGCAGAAAGCCTTTAGCCCTGATGGCAGATGATTCT,Distal Intergenic,13,94752270,94752593,324,1,Gm48316-201,-45542,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,36,42,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
6264,cg08778230,0.0000129,0.00000137,9.368741159,1.57E-18,gain,yes,-0.00000312,0.00000233,-1.340349839,0.181113124,neg,ns,0.0000926,0.000682997,0.135590222,0.892233237,pos,ns,0.049521603,0.0000147,0.0000235,0.62566244,0.531996714,pos,ns,0.032853033,Tenm2,Tenm2_Intron,11,36677753,36677802,36677753,36677754,50,-,CGCCACCTTTTAATCTTTTGTAAGAGTGAAAAGGCAGAAAAGGAACGCTC,"Intron (Tenm2-202/Tenm2, intron 4 of 30)",11,36006656,37235882,1229227,2,Tenm2-202,558080,Tenm2-202;Tenm2-208;Tenm2-201;Tenm2-204;Tenm2-205,Tenm2;Tenm2;Tenm2;Tenm2;Tenm2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,47,84,23964,ENSMUSG00000049336,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
24230,cg17735542,-5.26E-08,0.0000067,-0.007843022,0.993747283,loss,ns,0.0000153,0.0000114,1.340193905,0.181163745,pos,ns,-0.004770027,0.003336222,-1.429769123,0.153790315,neg,ns,0.813071014,0.0000489,0.000114732,0.426267177,0.670209006,pos,ns,0.805445395,Gm12902,Gm12902_Intergenic_downstream,4,124048458,124048507,124048458,124048459,50,-,CGATTTAAGCTAAATCAACGCCTACTTAAGTGAGCCGTAATAAGCATTCT,Distal Intergenic,4,123926234,123926555,322,1,Gm12902-201,122273,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,34,34,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24846,cg06798470,-0.00000194,0.00000866,-0.223806252,0.823055485,loss,ns,0.0000197,0.0000147,1.340172846,0.181170582,pos,ns,-0.000318942,0.004310812,-0.073986444,0.941068889,neg,ns,0.026378584,0.00012322,0.000148248,0.831170149,0.40651724,pos,ns,0.385121102,Gm4410,Gm4410_Intron,3,128882293,128882342,128882341,128882342,50,+,AAGAAATCTACACCAAGGTAACCTCTTGGGATGTGCTAGGTTTTCAAACG,"Intron (Gm43824-201/Gm43824-201, intron 4 of 4)",3,128839836,128840521,686,1,Gm4410-201,42457,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,13,100043393,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21120,cg12402286,-0.0000293,0.00000696,-4.210301449,0.0000335,loss,ns,0.0000158,0.0000118,1.339895371,0.181260688,pos,ns,0.00364892,0.003464027,1.053375219,0.292989396,pos,ns,0.533148098,-0.0000891,0.000119128,-0.747691869,0.45521283,neg,ns,0.906636777,Dcdc5,Dcdc5_Intron,2,106472552,106472601,106472552,106472553,50,+,CGTTGCCATCTGGACCAGATTGCTGCTAAATCAAATCAGATAAACGTTAC,"Intron (Gm14015-201/Gm14015-201, intron 1 of 2)",2,106383687,106406151,22465,1,Dcdc5-201,88865,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,22,329482,ENSMUSG00000074981,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23795,cg08819465,0.0000909,0.0000166,5.470498766,9.26E-08,gain,yes,-0.0000378,0.0000282,-1.339772517,0.181300594,neg,ns,0.013491214,0.008265797,1.632173414,0.103658299,pos,ns,0.984395921,-0.000278931,0.00028426,-0.981254021,0.327232665,neg,ns,0.50308551,Mbnl2,Mbnl2_Exon,14,120395691,120395740,120395739,120395740,50,+,CTCGCTGCCTGTTATTAAAAGACTCAGTCGACTGCCAAAGCAATGAAGCG,"Exon (Mbnl2-201/Mbnl2, exon 6 of 9)",14,120275669,120431697,156029,1,Mbnl2-201,120022,Mbnl2-201;Mbnl2-204;Mbnl2-206;Mbnl2-202;Mbnl2-203;Mbnl2-208;Mbnl2-210;Mbnl2-205,Mbnl2;Mbnl2;Mbnl2;Mbnl2;Mbnl2;Mbnl2;Mbnl2;Mbnl2,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,16,105559,ENSMUSG00000022139,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
897,cg05257518,0.0000132,0.00000408,3.23380078,0.001353265,gain,ns,0.00000929,0.00000694,1.339636129,0.181344904,pos,ns,0.003812161,0.002032718,1.875400453,0.061677456,pos,ns,1.209873549,-0.000132287,0.0000699,-1.892381554,0.059371719,neg,ns,0.065952144,Osr1,Osr1_Exon,12,9580562,9580611,9580562,9580563,50,-,CGCTGTCCACAAGACGCTACACTCACAGGTGAAGGAGCTCAAAACCTCCA,"Exon (Osr1-201/Osr1, exon 3 of 3)",12,9574441,9581500,7060,1,Osr1-201,6121,Osr1-202;Osr1-201,Osr1;Osr1,10446;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,23967,ENSMUSG00000048387,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
5116,cg11450835,-0.0000048,0.00000324,-1.48275348,0.139155792,loss,ns,-0.00000737,0.0000055,-1.339545507,0.18137435,neg,ns,0.00128837,0.001611197,0.799635262,0.424534441,pos,ns,0.372087072,-0.0000553,0.0000554,-0.997885992,0.319112916,neg,ns,0.883167215,Akap8l,Akap8l_Exon,17,32336611,32336660,32336659,32336660,50,-,AGGCATCGTATTGGCCCTCATAGGCCATTTCCATCTCAGGGTCAAGCTCG,"Exon (Akap8l-206/Akap8l, exon 5 of 13)",17,32321424,32350575,29152,2,Akap8l-206,13915,Akap8l-206;Akap8l-207;Akap8l-201;Akap8l-209;Akap8l-205;Akap8l-212;Akap8l-204;Akap8l-210;Akap8l-208;Akap8l-211;Akap8l-213;Akap8l-202;Akap8l-203,Akap8l;Akap8l;Akap8l;Akap8l;Akap8l;Akap8l;Akap8l;Akap8l;Akap8l;Akap8l;Akap8l;Akap8l;Akap8l,0;0;0;0;-3712;-3130;0;0;-3137;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,7,54194,ENSMUSG00000002625,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14185,cg05603368,0.0000829,0.00000676,12.26124217,1.91E-28,gain,yes,0.0000154,0.0000115,1.339350993,0.181437565,pos,ns,0.001958525,0.00336613,0.581832818,0.561102158,pos,ns,0.250958061,-0.000151119,0.000115761,-1.305441541,0.192710565,neg,ns,0.154155762,Gm28230,Gm28230_Intron,2,74734657,74734706,74734657,74734658,50,+,CGAGGACTGTAAATCTTTCCGGTTTATTGCTCTATGAACATATGCTCCGA,"Intron (Hoxd3-203/Hoxd3, intron 1 of 2)",2,74726728,74747918,21191,1,Gm28230-201,7929,Gm28230-201;Hoxd3-203;Hoxd3-205;Hoxd3-202;Hoxd3-201,Gm28230;Hoxd3;Hoxd3;Hoxd3;Hoxd3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,23,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
14850,cg14991183,-0.00000359,0.00000105,-3.412905558,0.000728121,loss,ns,-0.00000239,0.00000179,-1.339256558,0.181468261,neg,ns,0.000118042,0.000523476,0.225496494,0.821741637,pos,ns,0.085264707,-0.00000913,0.000018,-0.506978646,0.612530232,neg,ns,0.039704799,Phf12,Phf12_Exon,11,77984003,77984052,77984051,77984052,50,+,TATGTGTGTGCAGCAAATCCAAGCTCTGCTGGCTCCCCCCAAGACGGACG,"Exon (Phf12-202/Phf12, exon 2 of 11)",11,77982754,78026214,43461,1,Phf12-202,1249,Phf12-202;Phf12-201;Sez6-202;Sez6-207;Sez6-201;Sez6-208,Phf12;Phf12;Sez6;Sez6;Sez6;Sez6,0;0;0;0;0;30150,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,27,268448,ENSMUSG00000037791,conserved gene but different region,11,77984047,77984178,132,*,132,11,0.636363636,0.840277778,0.083333333,0.000000075,CpGisland,TRUE,U1,Pr-A
25850,cg21871065,-0.00000437,0.00000454,-0.964092282,0.335751114,loss,ns,-0.0000103,0.00000771,-1.339205475,0.181484868,neg,ns,-0.00464608,0.00225806,-2.057553678,0.040469034,neg,ns,1.392877166,0.000108633,0.0000777,1.398932882,0.162832812,pos,ns,0.9273376,Ism1,Ism1_Intron,2,139738316,139738365,139738316,139738317,50,+,CGGTAATAGCTTGAAACATGAAATTGTTTTTATTCCCAGCTTGGAGAAAT,"Intron (Ism1-202/Ism1, intron 2 of 5)",2,139678178,139758580,80403,1,Ism1-202,60138,Ism1-202;Ism1-201,Ism1;Ism1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,319909,ENSMUSG00000074766,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27874,cg11266165,0.0000392,0.0000117,3.345451954,0.000922456,gain,ns,-0.0000266,0.0000199,-1.339174155,0.18149505,neg,ns,0.043700018,0.005824686,7.502553316,6.66E-13,pos,yes,12.17625552,-0.001049221,0.00020031,-5.237976136,0.0000003,neg,yes,0.410842502,Smyd2,Smyd2_Intron,1,189921016,189921065,189921064,189921065,50,+,CAGCAGCCTTTTTAACTTTGGGAAAACCCAATGCTCACTTCACTCAAACG,"Intron (Smyd2-201/Smyd2, intron 1 of 11)",1,189880492,189922363,41872,2,Smyd2-201,1298,Smyd2-201;Smyd2-204,Smyd2;Smyd2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,7,226830,ENSMUSG00000026603,conserved gene and region,1,189921064,189921219,156,*,156,10,0.602564103,0.727272727,0.064102564,0.00000395,CpGisland,TRUE,U9,En-Pp
26422,cg15662374,-0.0000114,0.00000889,-1.28068262,0.2012625,loss,ns,0.0000202,0.0000151,1.339089494,0.181522576,pos,ns,0.013768757,0.004427098,3.110108559,0.00204397,pos,ns,2.689525457,-0.000538885,0.000152248,-3.539530708,0.000462273,neg,ns,0.653532682,Pan3,Pan3_threeUTR,5,147539755,147539804,147539803,147539804,50,+,GAAGACTGTTTAGGCTCCTAGCAAAATTGGGAACAATCAATGAGAGGCCG,3' UTR,5,147430161,147548502,118342,1,Pan3-201,109594,Pan3-201;Pan3-209;Pan3-210;Pan3-216;Pan3-208;Pan3-202;Pan3-206;Pan3-217;Pan3-213;Pan3-207,Pan3;Pan3;Pan3;Pan3;Pan3;Pan3;Pan3;Pan3;Pan3;Pan3,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,6,72587,ENSMUSG00000029647,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16240,cg23653022,-0.0000195,0.00000798,-2.444047402,0.015080608,loss,ns,-0.0000182,0.0000136,-1.339032642,0.181541061,neg,ns,0.00000953,0.003971948,0.002399394,0.998087106,pos,ns,0.000831555,0.000170323,0.000136595,1.246916491,0.213369395,pos,ns,0.213231313,Lhx1,Lhx1_Intergenic_upstream,11,84638568,84638617,84638568,84638569,50,+,CGTACATATTGGCTCCTCCAGCGGCTTTTAGGGAAAGCAAATGAGACTGA,Distal Intergenic,11,84518284,84525535,7252,2,Lhx1-201,-113033,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,20,23,16869,ENSMUSG00000018698,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
14374,cg05761480,-0.000166977,0.000013,-12.79998609,2.10E-30,loss,yes,0.0000297,0.0000222,1.33882196,0.181609579,pos,ns,-0.014500844,0.006492682,-2.23341358,0.026234965,neg,ns,1.581119513,0.000315872,0.000223283,1.4146707,0.158168704,pos,ns,0.743034958,Smad7,Smad7_Intron,18,75391814,75391863,75391814,75391815,50,-,CGCTCACAAGTTTATTAGCAGTTGATGGATACTTTGCAGAAACAAGTGAA,"Intron (Smad7-201/Smad7, intron 3 of 3)",18,75367529,75395935,28407,1,Smad7-201,24285,Smad7-201;Smad7-202;Smad7-205;Smad7-204;Smad7-203,Smad7;Smad7;Smad7;Smad7;Smad7,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,19,17131,ENSMUSG00000025880,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
21699,cg02883001,-0.000000298,0.00000124,-0.239784342,0.810655917,loss,ns,-0.00000283,0.00000211,-1.338805004,0.181615094,neg,ns,0.00032096,0.000619131,0.5184047,0.60454575,pos,ns,0.218570827,0.00000895,0.0000213,0.420143267,0.674671855,pos,ns,0.967846771,Prpf38b,Prpf38b_threeUTR,3,108905875,108905924,108905875,108905876,50,+,CGCATAATCCATGATGACCATTGTCTCTGAAAAGGGTCATTACCGCATGA,3' UTR,3,108902805,108911696,8892,2,Prpf38b-204,5772,Prpf38b-204;Prpf38b-201;Prpf38b-208;Prpf38b-202;Prpf38b-203;Prpf38b-206;Prpf38b-205;Prpf38b-207,Prpf38b;Prpf38b;Prpf38b;Prpf38b;Prpf38b;Prpf38b;Prpf38b;Prpf38b,0;0;0;-290;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,13,66921,ENSMUSG00000027881,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22829,cg04339553,-0.0000279,0.00000744,-3.750917861,0.00021023,loss,ns,-0.0000169,0.0000126,-1.338673605,0.181657838,neg,ns,-0.004170318,0.003704851,-1.12563736,0.261189747,neg,ns,0.583043875,-0.000114882,0.00012741,-0.901677013,0.367928474,neg,ns,0.865291296,Meis2,Meis2_Intron,2,115979943,115979992,115979943,115979944,50,+,CGGGTTGCTGGCCCTCTAAACCCCTTTGAACTTGTAATTGCTGCTGGTTT,"Intron (Meis2-201/Meis2, intron 8 of 11)",2,115863064,116065047,201984,2,Meis2-201,85055,Meis2-201;Meis2-203;Meis2-205;Meis2-206;Meis2-204;Meis2-202;Meis2-216;Meis2-217,Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,45,97,17536,ENSMUSG00000027210,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10489,cg25450199,0.0000711,0.0000111,6.407573318,5.49E-10,gain,yes,-0.0000252,0.0000189,-1.338560485,0.181694642,neg,ns,0.016285355,0.005523164,2.948555455,0.003435325,pos,ns,2.464032163,-0.000547295,0.000189941,-2.881394371,0.004235414,neg,ns,0.352757093,Npas3,Npas3_Intron,12,53838783,53838832,53838831,53838832,50,+,CTCTATTGATGTGCTCAGAGTTGAAAGGTTATGCTAGTAAATGCCATCCG,"Intron (Npas3-204/Npas3, intron 4 of 10)",12,53248157,54069532,821376,1,Npas3-204,590626,Npas3-204;Npas3-201;Npas3-203,Npas3;Npas3;Npas3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,83,103,27386,ENSMUSG00000021010,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13009,cg22012277,0.00000858,0.00000816,1.051565987,0.29381773,gain,ns,0.0000186,0.0000139,1.338540164,0.181701254,pos,ns,0.005794814,0.004060865,1.426989903,0.154589231,pos,ns,0.810820762,-0.000172603,0.000139653,-1.235944263,0.217414983,neg,ns,0.192848842,Gm4842,Gm4842_Intergenic_upstream,18,69125008,69125057,69125056,69125057,50,-,TTCACAAACCATCTGTTTTTCTCCCTAATGCCTTGCCCAAAGGTTTTTCG,Distal Intergenic,18,69256288,69257122,835,1,Gm4842-201,-131280,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,10,225681,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11080,cg12306961,0.0000737,0.00000905,8.139591942,9.74E-15,gain,yes,-0.0000206,0.0000154,-1.338532714,0.181703678,neg,ns,0.01034318,0.004505307,2.295776919,0.022355825,pos,ns,1.6506093,-0.000290294,0.000154937,-1.873626954,0.061922505,neg,ns,0.06436712,Nkx2-1,Nkx2-1_Exon,12,56535007,56535056,56535055,56535056,50,-,ACTCAAGATGTCAGACACTGAGAACGGAGTCGTGTGCTTTGGACTCATCG,Promoter (<=1kb),12,56531958,56535106,3149,2,Nkx2-1-202,50,Nkx2-1-202;Nkx2-1-201,Nkx2-1;Nkx2-1,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,29,21869,ENSMUSG00000001496,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
16220,cg14250709,0.00000695,0.00000475,1.463189192,0.144428773,gain,ns,-0.0000108,0.00000807,-1.338528946,0.181704904,neg,ns,-0.000238806,0.002364773,-0.100984888,0.919627738,neg,ns,0.036387938,0.0000692,0.0000813,0.85076868,0.395554515,pos,ns,0.901524767,Lhx1,Lhx1_Intergenic_upstream,11,84611031,84611080,84611031,84611032,50,+,CGGCAATTTTATGACTTGCTAATGTTCCTAATTACATGCCCGTGAAAGGC,Distal Intergenic,11,84518284,84525535,7252,2,Lhx1-201,-85496,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,20,23,16869,ENSMUSG00000018698,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6579,cg07221146,0.0000257,0.00000365,7.039668782,1.25E-11,gain,yes,-0.00000829,0.00000619,-1.3384871,0.181718521,neg,ns,0.004846484,0.00181454,2.670915509,0.007963784,pos,ns,2.098880543,-0.000146074,0.0000624,-2.340862373,0.019872853,neg,ns,0.033146617,Zfp536,Zfp536_fiveUTR,7,37773538,37773587,37773586,37773587,50,-,AATCAGTCACAGCCCGGGCGTTTAAGGGAGTCATCAGCGATCAAATGACG,Promoter (<=1kb),7,37710068,37773577,63510,2,Zfp536-205,0,Zfp536-202;Zfp536-201;Zfp536-203;Zfp536-206;Zfp536-209;Zfp536-208;Zfp536-205;Zfp536-207;Zfp536-210,Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536,0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,112,243937,ENSMUSG00000043456,conserved gene but different region,7,37773505,37773708,204,*,204,20,0.558823529,1.259259259,0.098039216,2.20E-15,CpGisland,TRUE,U13,Hc-P
18612,cg04609859,0.00000512,0.00000175,2.925798295,0.003689468,gain,ns,-0.00000398,0.00000297,-1.338344965,0.181764777,neg,ns,-0.000169823,0.000871257,-0.194916691,0.84558585,neg,ns,0.072842293,0.0000734,0.00003,2.450890985,0.014802384,pos,ns,0.038571294,Hoxb4,Hoxb4_fiveUTR,11,96318714,96318763,96318714,96318715,50,+,CGAGTCAGGGGTCGGAATAAATTTTAGTATATTTTGTGGGCAATTCCCAG,Promoter (<=1kb),11,96318267,96321638,3372,1,Hoxb4-201,447,Hoxb3-202;Hoxb4-201,Hoxb3;Hoxb4,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,6,15412,ENSMUSG00000038692,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
15253,cg11882732,-0.0000191,0.0000113,-1.698881905,0.090344711,loss,ns,0.0000256,0.0000191,1.338009153,0.181874098,pos,ns,-0.003587258,0.005599986,-0.640583384,0.52226662,neg,ns,0.282107731,-0.000099,0.000192583,-0.513918773,0.607674905,neg,ns,0.523310059,Gm5197,Gm5197_Intron,13,80001080,80001129,80001080,80001081,50,+,CGTATTTGTACACTCATCAAGGCTAATGGACCCTGAGGGTGCAATAGGAA,"Intron (Gm28526-201/Gm28526-201, intron 1 of 2)",13,80098222,80099418,1197,2,Gm5197-201,98289,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,4,382780,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1250,cg11539855,0.0000622,0.00000968,6.424830328,4.97E-10,gain,yes,0.000022,0.0000164,1.337805961,0.18194027,pos,ns,0.021561763,0.004815619,4.477464356,0.0000106,pos,ns,4.973519272,-0.00060524,0.000165609,-3.654636171,0.000302372,neg,ns,0.027901094,Bcor,Bcor_Intron,X,12135940,12135989,12135988,12135989,50,+,GAGAAAGGTCTGCAGCTGACAAATATTATCCATTCTCCCCATCGATCGCG,"Intron (Bcor-201/Bcor, intron 1 of 13)",20,12036743,12160355,123613,2,Bcor-201,24366,Bcor-201;Bcor-208,Bcor;Bcor,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,56,74,71458,ENSMUSG00000040363,conserved gene and region,X,12135982,12136053,72,*,72,10,0.666666667,1.252173913,0.138888889,2.10E-09,CpGisland,TRUE,NA,NRS
20026,cg09285425,-0.00000347,0.00000173,-1.999056285,0.046474975,loss,ns,-0.00000394,0.00000295,-1.33778831,0.181946019,neg,ns,-0.001759398,0.000863089,-2.0384906,0.042349176,neg,ns,1.37315504,0.0000232,0.0000297,0.780006654,0.435982086,pos,ns,0.958989282,Pgap2,Pgap2_threeUTR,7,102237404,102237453,102237452,102237453,50,+,ACACCATCTTTGCCATCCTGGAGTACACTGTTGTCTTAACCAACATGGCG,3' UTR,7,102210362,102238567,28206,1,Pgap2-204,27042,Pgap2-204;Pgap2-207;Pgap2-216;Pgap2-224;Pgap2-225;Pgap2-211;Pgap2-208;Pgap2-206;Pgap2-201;Pgap2-209;Pgap2-217;Pgap2-218;Pgap2-202;Pgap2-223;Pgap2-212;Pgap2-215;Pgap2-213;Pgap2-203;Pgap2-210;Rhog-202;Rhog-201;Rhog-203,Pgap2;Pgap2;Pgap2;Pgap2;Pgap2;Pgap2;Pgap2;Pgap2;Pgap2;Pgap2;Pgap2;Pgap2;Pgap2;Pgap2;Pgap2;Pgap2;Pgap2;Pgap2;Pgap2;Rhog;Rhog;Rhog,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;12635;12670;18601,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,4,233575,ENSMUSG00000030990,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12288,cg08245710,0.0000323,0.00000321,10.0631651,8.47E-21,gain,yes,0.0000073,0.00000546,1.337745471,0.181959973,pos,ns,0.012026429,0.001599292,7.519844891,5.96E-13,pos,yes,12.22479025,-0.000188676,0.000055,-3.430494167,0.000684137,neg,ns,0.925825529,Wdr7,Wdr7_Intron,18,63852613,63852662,63852661,63852662,50,-,GCTATTCAGAGGCAATTAAACTGCCTTTTTTCATGCCGGCGTGTGAGCCG,"Intron (Wdr7-201/Wdr7, intron 20 of 27)",18,63708685,63989776,281092,1,Wdr7-201,143928,Wdr7-201;Wdr7-205;Wdr7-204;Wdr7-202,Wdr7;Wdr7;Wdr7;Wdr7,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,11,104082,ENSMUSG00000040560,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20848,cg03143781,0.000115258,0.0000138,8.350381472,2.29E-15,gain,yes,-0.0000314,0.0000234,-1.337729327,0.181965231,neg,ns,0.006634487,0.006869732,0.965756325,0.334918919,pos,ns,0.475060319,0.0000855,0.000236249,0.362038035,0.717570271,pos,ns,0.552815626,Pax6,Pax6_Promoter,2,105664622,105664671,105664622,105664623,50,-,CGCCTGTCAGCTAACAGCTTGCCTAACTCGTTGACTTCCTCACTCATGGC,Promoter (4-5kb),2,105668900,105697364,28465,1,Pax6-207,-4278,Pax6-206;Pax6-207;Pax6-210;Pax6-214,Pax6;Pax6;Pax6;Pax6,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,10,78,18508,ENSMUSG00000027168,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
5666,cg10186512,0.00000225,0.00000107,2.109198164,0.035729097,gain,ns,-0.00000242,0.00000181,-1.337713185,0.181970489,neg,ns,0.001108584,0.0005301,2.091274106,0.037317254,pos,ns,1.428090322,-0.0000548,0.0000182,-3.005570176,0.002867335,neg,ns,0.970388251,Mapkap1,Mapkap1_Intron,2,34531263,34531312,34531263,34531264,50,+,CGTTAACATTCACGGGTGGTTCACTTATCATTCCTGACTGCACAGACATG,"Intron (Mapkap1-204/Mapkap1, intron 5 of 10)",2,34406862,34623475,216614,1,Mapkap1-204,124401,Mapkap1-204;Mapkap1-202;Mapkap1-201;Mapkap1-209;Mapkap1-203;Mapkap1-207,Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,59,227743,ENSMUSG00000038696,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6387,cg19629835,-0.0000191,0.00000785,-2.440343442,0.015233113,loss,ns,0.0000178,0.0000133,1.337658721,0.181988231,pos,ns,0.00706312,0.003905547,1.80848415,0.071500042,pos,ns,1.145693704,-0.000280574,0.000134311,-2.088979499,0.037524863,neg,ns,0.856703261,Cpeb3,Cpeb3_Exon,19,37105793,37105842,37105793,37105794,50,+,CGTCTCCGCCCATAGCTCCTGGCTGCATGTAAACATAGAAGAAAACCATG,"Exon (Cpeb3-201/Cpeb3, exon 5 of 11)",19,37021291,37207462,186172,2,Cpeb3-201,101620,Cpeb3-201;Cpeb3-203;Cpeb3-212;Cpeb3-210;Cpeb3-204;Cpeb3-208;Cpeb3-202;Cpeb3-205,Cpeb3;Cpeb3;Cpeb3;Cpeb3;Cpeb3;Cpeb3;Cpeb3;Cpeb3,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,9,208922,ENSMUSG00000039652,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16615,cg16322964,-0.00000469,0.00000181,-2.596304107,0.009872134,loss,ns,0.00000411,0.00000307,1.337608891,0.182004465,pos,ns,0.00139632,0.000899711,1.551964669,0.121690958,pos,ns,0.91474169,-0.0000696,0.0000309,-2.24803324,0.025276609,neg,ns,0.953211568,Btbd11,Btbd11_Exon,10,85629257,85629306,85629257,85629258,50,-,CGCCATTGGACGGCTCTGACTTTTGCTGTGTTGCATGGACATATTCCTGT,"Exon (Btbd11-203/Btbd11, exon 7 of 17)",10,85386814,85660292,273479,1,Btbd11-203,242443,Btbd11-203;Btbd11-201;Btbd11-202;Btbd11-206,Btbd11;Btbd11;Btbd11;Btbd11,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,13,13,74007,ENSMUSG00000020042,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18559,cg01183821,-0.00000497,0.0000014,-3.557493831,0.000432953,loss,ns,0.00000317,0.00000237,1.337607238,0.182005003,pos,ns,0.00139114,0.000695146,2.001219317,0.046240164,pos,ns,1.334980634,-0.0000351,0.0000239,-1.466628768,0.14349075,neg,ns,0.041312096,Arid2,Arid2_Exon,15,96287917,96287966,96287917,96287918,50,+,CGGTGGGTGGGAAGGAGCTGGATCTTCACGGTCTCTACACCAGAGTCACT,Promoter (<=1kb),15,96287518,96352038,64521,1,Arid2-202,399,Arid2-202;Arid2-201,Arid2;Arid2,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,9,77044,ENSMUSG00000033237,conserved gene and region,15,96286443,96288510,2068,*,2068,288,0.739845261,1.018041841,0.13926499,3.93E-264,CpGisland,TRUE,U1,Pr-A
27046,cg04646275,-0.00000743,0.00000274,-2.710276058,0.007097049,loss,ns,0.00000623,0.00000466,1.337578975,0.182014211,pos,ns,0.000291545,0.001364415,0.21367759,0.830938954,pos,ns,0.080430881,-0.0000143,0.0000469,-0.304731596,0.760775062,neg,ns,0.947907724,Samhd1,Samhd1_threeUTR,2,157112879,157112928,157112879,157112880,50,-,CGGGCAAACTTAATAAAGCGCTTGTAATCAAAATTATTTTGGATTCCAAG,3' UTR,2,157097533,157135265,37733,2,Samhd1-201,22337,Samhd1-201;Samhd1-204;Samhd1-206;Samhd1-202;Samhd1-210;Samhd1-203;Samhd1-205;Samhd1-207,Samhd1;Samhd1;Samhd1;Samhd1;Samhd1;Samhd1;Samhd1;Samhd1,0;0;0;0;-2267;0;-2839;-2268,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,56045,ENSMUSG00000027639,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14452,cg12977696,0.000000243,0.000000542,0.448749592,0.653925826,gain,ns,-0.00000123,0.000000921,-1.337524447,0.182031978,neg,ns,-0.000258125,0.000269873,-0.95646911,0.339580576,neg,ns,0.469057159,-0.00000124,0.00000928,-0.133348047,0.894004652,neg,ns,0.008472883,Ywhae,Ywhae_fiveUTR,11,75732867,75732916,75732915,75732916,50,+,CGGTTGCCATAGAGCTGAGCAGTTGTCCGCGTGCGCAGGCGGAAGTCCCG,Promoter (<=1kb),11,75732869,75765845,32977,1,Ywhae-201,0,Ywhae-201;Ywhae-203;Ywhae-204;Ywhae-202,Ywhae;Ywhae;Ywhae;Ywhae,0;0;0;-232,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,9,9,22627,ENSMUSG00000020849,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11745,cg10270732,-0.00000995,0.00000423,-2.352130421,0.019291424,loss,ns,0.00000961,0.00000719,1.337487948,0.18204387,pos,ns,0.000700498,0.002105749,0.33265971,0.739616009,pos,ns,0.130993697,0.0000217,0.0000724,0.300023661,0.764360189,pos,ns,0.583917531,Dapk1,Dapk1_Intron,13,60425027,60425076,60425075,60425076,50,+,GCTGAGGGGCATAATTTGTCACACAAATAAACAAACACTATTTGGTTCCG,"Intron (Gm35333-202/Gm35333-202, intron 2 of 3)",13,60601947,60762802,160856,1,Dapk1-207,-176871,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,2,69635,ENSMUSG00000021559,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25790,cg08347067,0.0000167,0.00000272,6.140989203,2.51E-09,gain,yes,-0.00000618,0.00000462,-1.337441769,0.182058917,neg,ns,0.00068317,0.001353569,0.50471753,0.614115827,pos,ns,0.21174971,0.00000914,0.0000465,0.19642402,0.844407002,pos,ns,0.089561095,Uncx,Uncx_Intergenic_downstream,5,139548666,139548715,139548666,139548667,50,-,CGCTGGGCTCCTGCAGAGTTTTGATATGAAAGTAATTATTTTCCGGTGGC,Downstream (<1kb),5,139543898,139545268,1371,1,Uncx-202,4817,Uncx-201;Uncx-202,Uncx;Uncx,0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,59,88,22255,ENSMUSG00000029546,conserved gene and region,5,139548575,139548667,93,*,93,17,0.838709677,1.045634921,0.182795699,2.53E-18,CpGisland,TRUE,U13,Hc-P
25643,cg03120509,-0.00000114,0.00000083,-1.377474586,0.169359245,loss,ns,0.00000189,0.00000141,1.337401401,0.182072072,pos,ns,0.001225356,0.000413167,2.96576532,0.003253879,pos,ns,2.487598599,-0.0000198,0.0000142,-1.3941634,0.164266696,neg,ns,0.974566618,Dera,Dera_Intron,6,137830842,137830891,137830842,137830843,50,-,CGGTCCAGAAAAACTTATTACTTTTAATAATATGAGGTGAAGAGAAAATT,"Intron (Dera-204/Dera, intron 2 of 3)",6,137754556,137837457,82902,1,Dera-204,76286,Dera-204;Dera-201;Dera-207;Dera-210;Dera-213;Dera-206;Dera-215,Dera;Dera;Dera;Dera;Dera;Dera;Dera,0;0;0;0;0;0;-4666,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,232449,ENSMUSG00000030225,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
729,cg09426590,0.000128,0.0000174,7.348991884,1.78E-12,gain,yes,0.0000396,0.0000296,1.337292832,0.182107455,pos,ns,0.05834756,0.008668807,6.730748779,8.17E-11,pos,yes,10.0876689,-0.001184301,0.00029812,-3.972570064,0.0000885,neg,ns,0.525263327,Nipbl,Nipbl_Exon,15,8324255,8324304,8324303,8324304,50,-,AAATAAATATCAAAGCTCTGGGCAAACGGCCTCATGGAGGCCAAGTATCG,"Exon (Nipbl-201/Nipbl, exon 27 of 47)",15,8290617,8444463,153847,2,Nipbl-201,120159,Nipbl-201,Nipbl,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,19,36,71175,ENSMUSG00000022141,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6889,cg13187690,0.00000775,0.00000565,1.371059817,0.171348041,gain,ns,-0.0000128,0.00000961,-1.337210635,0.182134247,neg,ns,-0.003677786,0.002814407,-1.306771452,0.192258915,neg,ns,0.716113512,0.000122462,0.0000968,1.265271037,0.206724397,pos,ns,0.841868338,Gm18591,Gm18591_Intergenic_downstream,12,39301394,39301443,39301442,39301443,50,-,GCACACAGCTGTGAGCTGCTTCTCACGCTGGCACAAAAACACTATCATCG,Distal Intergenic,12,39208892,39209654,763,1,Gm18591-201,92551,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,5,100417403,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21441,cg03675182,-0.00000537,0.00000199,-2.694917646,0.00742458,loss,ns,-0.00000453,0.00000339,-1.337204117,0.182136372,neg,ns,0.001106775,0.000992469,1.115173129,0.265639992,pos,ns,0.575706541,-0.0000529,0.0000341,-1.548851939,0.122437573,neg,ns,0.971442601,Rbm5,Rbm5_threeUTR,9,107759826,107759875,107759874,107759875,50,+,CGAAGGCGAAACCACGGCTTACACCTAGAGACAGCATTCAGATATAGACG,3' UTR,9,107740371,107770996,30626,2,Rbm5-214,11121,Rbm5-214;Rbm5-219;Rbm5-224;Rbm5-210;Rbm5-201;Rbm5-211;Rbm5-221;Rbm5-220;Rbm5-223;Rbm5-208;Rbm5-203;Rbm5-204;Rbm5-218,Rbm5;Rbm5;Rbm5;Rbm5;Rbm5;Rbm5;Rbm5;Rbm5;Rbm5;Rbm5;Rbm5;Rbm5;Rbm5,0;0;0;0;0;0;0;0;0;0;0;11084;11070,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,11,83486,ENSMUSG00000032580,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25881,cg23273281,-0.00000372,0.00000425,-0.875161183,0.382163762,loss,ns,0.00000965,0.00000721,1.337087961,0.182174237,pos,ns,0.000472588,0.002113634,0.223590462,0.823223258,pos,ns,0.084482368,-0.000103518,0.0000727,-1.42415212,0.155408247,neg,ns,0.904714345,Gm19080,Gm19080_Intergenic_downstream,3,140340716,140340765,140340764,140340765,50,-,ATCTATGTCCCCAGACTGCTCATCCAATGTTCCAATGACAATGATTAGCG,Distal Intergenic,3,140506718,140507267,550,2,Gm19080-201,166551,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,100418222,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14337,cg11755405,0.0000733,0.00000833,8.80622516,9.34E-17,gain,yes,-0.0000189,0.0000141,-1.337043389,0.182188769,neg,ns,0.012164972,0.004143753,2.935737673,0.003576427,pos,ns,2.446550624,-0.000283226,0.000142503,-1.987504906,0.04774609,neg,ns,0.138226967,Kcnh5,Kcnh5_Exon,12,75176448,75176497,75176496,75176497,50,+,CTCCTTACCACTGGAGCGCCTGACGATGTTCTCCAAAAATGTGTTCTGCG,Promoter (<=1kb),12,74897220,75177332,280113,2,Kcnh5-201,835,Kcnh5-201,Kcnh5,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,238271,ENSMUSG00000034402,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
27557,cg23186510,-0.00000742,0.00000404,-1.83633458,0.067265644,loss,ns,0.00000917,0.00000686,1.336929663,0.182225851,pos,ns,-0.00304007,0.002009825,-1.512604493,0.13139892,neg,ns,0.881408206,0.000054,0.0000691,0.780678317,0.435587432,pos,ns,0.860344745,Tshz2,Tshz2_Intron,2,169892640,169892689,169892688,169892689,50,-,AGACTGCACACCTCGGTGAGCAGATTAAAGCTATAAACTATTTAGCCTCG,"Intron (Tshz2-202/Tshz2, intron 2 of 2)",2,169633013,169913093,280081,1,Tshz2-202,259627,Tshz2-202;Tshz2-201;Tshz2-203;Tshz2-205;Tshz2-204,Tshz2;Tshz2;Tshz2;Tshz2;Tshz2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,21,30,228911,ENSMUSG00000047907,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20319,cg21487207,0.0000185,0.00000689,2.689679358,0.007539368,gain,ns,0.0000157,0.0000117,1.336907871,0.182232957,pos,ns,0.00569046,0.003431498,1.658302174,0.098267945,pos,ns,1.007588127,-0.0000137,0.000118009,-0.116022316,0.907709978,neg,ns,0.191487711,Hoxc5,Hoxc5_Intron,15,102998139,102998188,102998139,102998140,50,+,CGATCGACTCACAAGTTGGATTGGCCACAAGAAGTCATGTGGATTCCATC,"Intron (Hoxc5-202/Hoxc5, intron 1 of 1)",15,102967443,103015676,48234,1,Hoxc5-202,30696,Hoxc5-202;Hoxc6-202;Hoxc6-203;Hoxc8-201;Hoxc8-202,Hoxc5;Hoxc6;Hoxc6;Hoxc8;Hoxc8,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,46,134,15424,ENSMUSG00000022485,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
3330,cg05735550,-0.0000148,0.00000918,-1.611230229,0.108147207,loss,ns,-0.0000208,0.0000156,-1.336651818,0.182316469,neg,ns,-0.015742279,0.004569454,-3.445111928,0.000649484,neg,ns,3.187431649,0.0003517,0.000157143,2.238086949,0.025925238,pos,ns,0.115237299,Srpk2,Srpk2_fiveUTR,5,23616341,23616390,23616341,23616342,50,-,CGACTTCTCAGAGTTAACTGACATCAGCAGCTCAATCTTCTGCTTGATTT,Promoter (<=1kb),5,23503264,23616534,113271,2,Srpk2-201,144,Srpk2-201;Srpk2-204;Srpk2-202;Srpk2-205;Srpk2-206;Srpk2-208;Srpk2-207;Srpk2-203,Srpk2;Srpk2;Srpk2;Srpk2;Srpk2;Srpk2;Srpk2;Srpk2,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,8,20817,ENSMUSG00000062604,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
20525,cg01150262,-0.00000607,0.00000172,-3.531827443,0.000475408,loss,ns,-0.0000039,0.00000292,-1.336556808,0.182347464,neg,ns,-0.001022377,0.000855071,-1.195664244,0.23274141,neg,ns,0.63312634,0.0000326,0.0000294,1.109467128,0.268088632,pos,ns,0.964338464,Copz1,Copz1_Exon,15,103290977,103291026,103291025,103291026,50,+,TTTATGAGCCTCACTTGACAAATTTAATTGCAGCTCTGCTTATTGTACCG,"Exon (Copz1-203/Copz1, exon 3 of 4)",15,103272714,103296850,24137,1,Copz1-202,18263,Copz1-202;Copz1-203;Copz1-201;Copz1-204,Copz1;Copz1;Copz1;Copz1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,6,56447,ENSMUSG00000060992,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1575,cg09287555,0.0000219,0.00000384,5.703334262,2.74E-08,gain,yes,-0.00000872,0.00000652,-1.33654635,0.182350875,neg,ns,0.003451556,0.001910886,1.806260073,0.071847452,pos,ns,1.143588627,-0.000169359,0.0000657,-2.577170116,0.010423292,neg,ns,0.023625146,Runx1t1,Runx1t1_fiveUTR,4,13784931,13784980,13784979,13784980,50,+,TGCAATCCGGAGTGTCAGCTCTCCATCTGTCTCTGCCTGGCAGGCGCACG,5' UTR,4,13743436,13893649,150214,1,Runx1t1-201,41495,Runx1t1-201;Runx1t1-206;Runx1t1-204;Runx1t1-203;Runx1t1-202,Runx1t1;Runx1t1;Runx1t1;Runx1t1;Runx1t1,0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,24,12395,ENSMUSG00000006586,conserved gene and region,4,13784938,13785132,195,*,195,13,0.646153846,0.682736332,0.066666667,4.94E-08,CpGisland,TRUE,U1,Pr-A
16544,cg10354363,-0.00000124,0.00000445,-0.278082307,0.781134557,loss,ns,0.0000101,0.00000756,1.336335893,0.182419547,pos,ns,0.006354614,0.002214058,2.870120964,0.004385271,pos,ns,2.358003555,-0.00018847,0.0000761,-2.475261066,0.013848184,neg,ns,0.918833578,Camkmt,Camkmt_Intron,17,85393935,85393984,85393983,85393984,50,+,CGCTCAGTAATTAGATTCTTTTGAATTAGATTGGCCATTCAGGAACGTCG,"Intron (Camkmt-201/Camkmt, intron 5 of 10)",17,85090552,85458588,368037,1,Camkmt-201,303383,Camkmt-201,Camkmt,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,41,44,73582,ENSMUSG00000071037,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4442,cg25530297,-0.0000122,0.0000128,-0.951754089,0.341963175,loss,ns,0.0000291,0.0000217,1.336290583,0.182434334,pos,ns,0.003361855,0.006371233,0.52766162,0.598111673,pos,ns,0.223217722,-0.0000498,0.000219106,-0.227446067,0.820226831,neg,ns,0.224326639,Mb21d2,Mb21d2_Exon,16,28929521,28929570,28929569,28929570,50,-,TGGTCGTGCTTCGTAAATTCTTGGATGAGTTTGTTCAATTCCTCCACCCG,Promoter (<=1kb),16,28826176,28929673,103498,2,Mb21d2-201,103,Mb21d2-201,Mb21d2,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,4,239796,ENSMUSG00000051065,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
18639,cg20207275,-0.0000268,0.00000599,-4.471330417,0.0000109,loss,ns,-0.0000136,0.0000102,-1.33622327,0.182456304,neg,ns,0.008601551,0.002982734,2.883780463,0.004204301,pos,ns,2.37630621,-0.0002647,0.000102576,-2.580523719,0.010324746,neg,ns,0.900415213,Arid2,Arid2_Exon,15,96372334,96372383,96372382,96372383,50,+,CTTAATGGACCTCTAGCTTCAAGTTTGAATTCAGATGTGCCTCAGCAACG,"Exon (Arid2-201/Arid2, exon 15 of 21)",15,96287573,96404992,117420,1,Arid2-201,84761,Arid2-201,Arid2,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,9,77044,ENSMUSG00000033237,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9244,cg05635248,0.000000505,0.00000171,0.296069445,0.767375284,gain,ns,0.00000387,0.0000029,1.336197039,0.182464865,pos,ns,0.001384203,0.000848736,1.630900035,0.103926915,pos,ns,0.983271964,-0.0000416,0.0000292,-1.426554682,0.154714627,neg,ns,0.95595399,Cadm1,Cadm1_Exon,9,47836691,47836740,47836739,47836740,50,-,AAAAACGATTTGTTTTTACTTGTAAGGCCTTACTCAGTTGCCCAATTCCG,"Exon (Cadm1-209/Cadm1, exon 10 of 12)",9,47530173,47853385,323213,1,Cadm1-204,306518,Cadm1-204;Cadm1-209;Cadm1-206;Cadm1-202;Cadm1-203;Cadm1-211;Cadm1-201,Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,13,77,54725,ENSMUSG00000032076,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
749,cg18138765,-0.00000997,0.00000339,-2.939612123,0.003533227,loss,ns,-0.0000077,0.00000576,-1.336132679,0.182485874,neg,ns,-0.001692173,0.001687701,-1.002649439,0.316812016,neg,ns,0.499198355,0.00000263,0.000058,0.045389524,0.963826055,pos,ns,0.060293674,Pde10a,Pde10a_Intergenic_upstream,17,8508352,8508401,8508352,8508353,50,-,CGGCCTAACGGTTTGATTTATGAGTCTGATAATAAGAATCCCATTAGGCT,Distal Intergenic,17,8525372,8981671,456300,1,Pde10a-204,-17020,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,23984,ENSMUSG00000023868,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3251,cg24829928,-0.00000494,0.00000639,-0.773472371,0.439832277,loss,ns,0.0000145,0.0000109,1.336108287,0.182493836,pos,ns,0.000430343,0.003180169,0.135320914,0.892445973,pos,ns,0.049418066,-0.000183803,0.000109366,-1.680622293,0.093843577,neg,ns,0.834400965,Kcnma1,Kcnma1_threeUTR,14,23363817,23363866,23363865,23363866,50,+,CAAGACTCCGATGCTGTCATCAAACTGCATAGATTTGATGTTGAGTGACG,3' UTR,14,23289431,23803304,513874,2,Kcnma1-207,439438,Kcnma1-207;Kcnma1-210;Kcnma1-205;Kcnma1-201;Kcnma1-208;Kcnma1-209;Kcnma1-212;Kcnma1-204;Kcnma1-202;Kcnma1-211;Kcnma1-229;Kcnma1-234;Kcnma1-223;Kcnma1-214;Kcnma1-216;Kcnma1-219;Kcnma1-220;Kcnma1-224;Kcnma1-233;Kcnma1-236;Kcnma1-237;Kcnma1-213;Kcnma1-228;Kcnma1-203;Kcnma1-206;Kcnma1-221;Kcnma1-225;Kcnma1-226;Kcnma1-230;Kcnma1-235,Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,13,41,16531,ENSMUSG00000063142,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27185,cg14102676,0.0000307,0.00000576,5.330326986,0.000000189,gain,yes,-0.0000131,0.00000978,-1.336038866,0.182516499,neg,ns,0.003506864,0.002865939,1.223635257,0.222019099,pos,ns,0.653609665,-0.000199981,0.0000986,-2.029036979,0.043308776,neg,ns,0.0676612,Mafb,Mafb_Exon,2,160365820,160365869,160365820,160365821,50,-,CGGGACACCTCCTGCTTAAGCTGCTCCACCTGCTGAATGAGCTGCGTCTT,"Exon (Mafb-201/Mafb, exon 1 of 1)",2,160363703,160367065,3363,2,Mafb-201,1196,Mafb-201,Mafb,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,14,22,16658,ENSMUSG00000074622,conserved gene and region,2,160365737,160365821,85,*,85,9,0.670588235,0.942118227,0.105882353,0.000000223,CpGisland,TRUE,U3,Pr-B
22652,cg22149945,0.0000031,0.00000698,0.443571508,0.657661834,gain,ns,-0.0000158,0.0000119,-1.335572301,0.182668867,neg,ns,0.007744125,0.003474695,2.228720929,0.026549197,pos,ns,1.575948602,-0.000242038,0.000119494,-2.025514167,0.043671055,neg,ns,0.841611119,Mif4gd,Mif4gd_Exon,11,115609550,115609599,115609550,115609551,50,+,CGTAGCACATGCGTCCTGCTTCCTTGCTGAACACACAGTCCTGCAGAGAA,"Exon (Mif4gd-203/Mif4gd, exon 2 of 5)",11,115607918,115612503,4586,2,Mif4gd-203,2904,Mif4gd-203;Mif4gd-204;Mif4gd-206;Mif4gd-201;Mif4gd-202;Mif4gd-205;Mif4gd-209;Mif4gd-210;Mif4gd-208;Mif4gd-207;Mrps7-201;Mrps7-202;Slc25a19-201;Slc25a19-212,Mif4gd;Mif4gd;Mif4gd;Mif4gd;Mif4gd;Mif4gd;Mif4gd;Mif4gd;Mif4gd;Mif4gd;Mrps7;Mrps7;Slc25a19;Slc25a19,0;0;0;0;0;0;0;0;0;3321;5625;4683;18546;18696,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,69674,ENSMUSG00000020743,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8838,cg21352559,-0.0000281,0.00000769,-3.649704121,0.000307991,loss,ns,0.0000174,0.0000131,1.335560103,0.182672852,pos,ns,0.0000559,0.003825537,0.014613305,0.988350084,pos,ns,0.005089196,-0.000165961,0.00013156,-1.26148999,0.208080775,neg,ns,0.862311608,Gm18112,Gm18112_Intergenic_downstream,12,46020901,46020950,46020901,46020902,50,+,CGTTTCCAATCTCATTACAGATTGCAATTTTCAGTGCAGATTACATGATG,Distal Intergenic,12,46269750,46273884,4135,2,Gm18112-201,252934,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,5,100416440,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26592,cg03329528,-0.0000275,0.00000766,-3.586751446,0.000388904,loss,ns,-0.0000174,0.000013,-1.335481949,0.182698385,neg,ns,-0.008523042,0.003813966,-2.234693089,0.026149848,neg,ns,1.582530834,0.0000643,0.000131162,0.490411326,0.62418979,pos,ns,0.846138647,Casz1,Casz1_Exon,4,148946050,148946099,148946098,148946099,50,-,GTACGCCAACAAGTTCCACTTCCACTGTCTCTTTGGGAACTGCAAGTACG,"Exon (Casz1-202/Casz1, exon 17 of 21)",4,148804429,148954889,150461,1,Casz1-202,141621,Casz1-201;Casz1-202;Casz1-207,Casz1;Casz1;Casz1,0;0;-903,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15085,cg08340292,0.00000163,0.00000123,1.322541922,0.186962617,gain,ns,0.00000279,0.00000209,1.335436227,0.182713323,pos,ns,0.001232185,0.000611618,2.014632048,0.044806431,pos,ns,1.348659649,-0.0000141,0.000021,-0.66996331,0.503379913,neg,ns,0.040884953,Zfp827,Zfp827_Promoter,8,79028827,79028876,79028875,79028876,50,+,TAGGGTTACAGAGGTGAAACTGACAAAGACACAGCCCGGGTTACTCCTCG,Promoter (<=1kb),8,79028437,79071837,43401,1,Zfp827-201,390,Zfp827-201;Zfp827-202;Zfp827-203;Zfp827-209,Zfp827;Zfp827;Zfp827;Zfp827,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,10,28,622675,ENSMUSG00000071064,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
6726,cg14905969,-0.0000334,0.0000243,-1.375550091,0.169954069,loss,ns,0.0000551,0.0000412,1.335319384,0.182751503,pos,ns,0.0120768,0.012078479,0.999860998,0.318157594,pos,ns,0.497357706,-0.000443692,0.000415378,-1.06816534,0.286277019,neg,ns,0.744184884,Pcdh1,Pcdh1_threeUTR,18,38189709,38189758,38189757,38189758,50,+,CGGGGGCCGTTTTGGTGTTCCGGTCTTCCGGGGGGCTGGGGCTGCCGGCG,3' UTR,18,38185914,38212053,26140,2,Pcdh1-203,22295,Pcdh1-203;Pcdh1-204,Pcdh1;Pcdh1,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,10,17,75599,ENSMUSG00000051375,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15775,cg25970061,0.000053,0.00000542,9.785922595,6.98E-20,gain,yes,-0.0000123,0.0000092,-1.335073272,0.182831942,neg,ns,0.00848174,0.002696312,3.14568224,0.001817772,pos,ns,2.740460528,-0.0000612,0.0000927,-0.660278088,0.509565693,neg,ns,0.605486658,Dpf3,Dpf3_Intron,12,83337280,83337329,83337328,83337329,50,+,GTGACTTCCAGCACGATCCATCACACCAGAGACAGCTTCTGTGCAAACCG,"Intron (Dpf3-204/Dpf3, intron 1 of 8)",12,83213745,83350895,137151,2,Dpf3-204,13566,Dpf3-204;Dpf3-207;Dpf3-203;Dpf3-201;Dpf3-206;Dpf3-205,Dpf3;Dpf3;Dpf3;Dpf3;Dpf3;Dpf3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,16,70127,ENSMUSG00000021221,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21585,cg17726247,-0.00000658,0.0000055,-1.196445596,0.232436962,loss,ns,0.0000125,0.00000935,1.335059426,0.182836468,pos,ns,0.000958394,0.002738061,0.350026484,0.726556514,pos,ns,0.138730599,0.0000458,0.0000942,0.486719382,0.626801141,pos,ns,0.878285718,Zfhx3,Zfhx3_Intron,8,108466804,108466853,108466804,108466805,50,-,CGAGTTCACTCTCATCATTTTAATAGTGGACCTAAGGTATGTTGCCATGT,"Intron (Zfhx3-204/Zfhx3, intron 3 of 15)",8,107942644,108961630,1018987,1,Zfhx3-204,524160,Zfhx3-204,Zfhx3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,114,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4493,cg05679822,0.000067,0.00000848,7.907521275,4.66E-14,gain,yes,-0.0000192,0.0000144,-1.334789239,0.182924808,neg,ns,0.014848538,0.004219534,3.518999181,0.000498061,pos,ns,3.302717583,-0.00017111,0.000145109,-1.179176684,0.239232034,neg,ns,0.126591203,Spred3,Spred3_fiveUTR,7,29168486,29168535,29168486,29168487,50,-,CGGATTTATGAATGAGACCGGATGCAAAGCTCACTGAGTCACCCAGCAAC,Promoter (<=1kb),7,29158829,29168647,9819,2,Spred3-201,112,Ggn-202;Ggn-201;Ggn-203;Ggn-205;Ggn-204;Spred3-201;Spred3-203;Spred3-202;Spred3-204,Ggn;Ggn;Ggn;Ggn;Ggn;Spred3;Spred3;Spred3;Spred3,-1675;-1855;-1855;-1872;-1969;0;-1336;0;1876,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,7,101809,ENSMUSG00000037239,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
7614,cg16587137,0.000109164,0.000016,6.819131543,4.80E-11,gain,yes,-0.0000363,0.0000272,-1.334755141,0.182935959,neg,ns,0.022867706,0.007967624,2.870078388,0.004385846,pos,ns,2.357946614,-0.000403472,0.000274006,-1.472494627,0.141901885,neg,ns,0.35529889,Zbtb20,Zbtb20_Intron,16,43466756,43466805,43466756,43466757,50,+,CGTAGGCTGGTGATCAGATGGTCAATTATGTGTTTGTCAAAACACAGTGG,"Intron (Zbtb20-211/Zbtb20, intron 4 of 4)",16,42907542,43569781,662240,1,Zbtb20-211,559214,Zbtb20-209;Zbtb20-211;Zbtb20-217;Zbtb20-218;Zbtb20-204;Zbtb20-215;Zbtb20-201;Zbtb20-203;Zbtb20-214;Zbtb20-213;Zbtb20-219;Zbtb20-216,Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,98,56490,ENSMUSG00000022708,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14000,cg19683256,0.0000276,0.0000127,2.168296808,0.030896488,gain,ns,0.0000289,0.0000216,1.334687305,0.182958144,pos,ns,0.00801641,0.006337672,1.264882568,0.206863455,pos,ns,0.684316226,0.000013,0.000217952,0.059540046,0.952560333,pos,ns,0.29086267,Gm13668,Gm13668_Exon,2,74130368,74130417,74130416,74130417,50,-,GAAGGACCCTTTCCTCTCGCCATGCTAATTCAGAAAATCTGCTCTTAACG,"Exon (Gm28640-201/Gm28640-201, exon 1 of 1)",2,73959669,73960669,1001,2,Gm13668-201,-169748,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,20,667729,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3013,cg22968128,0.00000123,0.00000476,0.25802855,0.796556086,gain,ns,0.0000108,0.00000809,1.334676735,0.182961602,pos,ns,0.010302523,0.00237013,4.346817337,0.0000188,pos,ns,4.726937382,-0.000290759,0.0000815,-3.56721956,0.000417816,neg,ns,0.88938481,Etv5,Etv5_Intron,16,22389698,22389747,22389698,22389699,50,-,CGAGTCAGTCATAATTGAGAGGGTGCTAAGCTGGATGACTATCAAAAGAC,"Intron (Etv5-201/Etv5, intron 11 of 12)",16,22381309,22439719,58411,2,Etv5-201,49972,Etv5-201;Etv5-203;Etv5-205,Etv5;Etv5;Etv5,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,3,104156,ENSMUSG00000013089,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1436,cg20393185,0.00000051,0.0000065,0.078497864,0.937482673,gain,ns,-0.0000147,0.000011,-1.334582681,0.182992365,neg,ns,-0.00422207,0.003233502,-1.305726502,0.192613724,neg,ns,0.715312773,-0.000162995,0.0001112,-1.465785277,0.143720346,neg,ns,0.835172818,Triqk,Triqk_Intergenic_upstream,4,12880325,12880374,12880373,12880374,50,-,CGGCTATGTTCCCTACATAATTCAAATTCAGTGGCAGGCTTCCACCTCCG,Distal Intergenic,4,12906838,12980873,74036,1,Triqk-201,-26513,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,11,208820,ENSMUSG00000055963,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12897,cg07502389,0.0000428,0.00000703,6.090166832,3.34E-09,gain,yes,-0.0000159,0.0000119,-1.334574451,0.182995057,neg,ns,0.005727325,0.003496749,1.637900221,0.102457092,pos,ns,0.989457975,0.0000997,0.000120253,0.829140053,0.407663126,pos,ns,0.078114596,Nefm,Nefm_fiveUTR,14,68124812,68124861,68124860,68124861,50,+,ATCTTGGAGGCCTTGGGGCGTGTGGCTGTCACAGCGTTCTGCCGGCCTCG,Promoter (<=1kb),14,68082590,68124846,42257,2,Nefm-202,0,Nefm-202;Nefm-201,Nefm;Nefm,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,4,18040,ENSMUSG00000022054,mapped to different genes,14,68124846,68125102,257,*,257,25,0.723735409,0.743634259,0.097276265,4.87E-19,CpGisland,TRUE,U3,Pr-B
14046,cg02136345,-0.00000509,0.00000222,-2.294157513,0.022449842,loss,ns,-0.00000503,0.00000377,-1.33448193,0.183025324,neg,ns,0.000341394,0.001104757,0.309021735,0.757512577,pos,ns,0.120610152,-0.0000512,0.000038,-1.348908912,0.178350721,neg,ns,0.961233237,Lnpk,Lnpk_Intergenic_downstream,2,74450946,74450995,74450946,74450947,50,+,CGGCTAAAGGTTTTTATAGGCACAGATCAAGAGATCATAATAGAAGCATA,Distal Intergenic,2,74520341,74533106,12766,2,Lnpk-204,82111,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,15,16,69605,ENSMUSG00000009207,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12467,cg13060490,-0.00000114,0.000000884,-1.284965083,0.199763734,loss,ns,0.000002,0.0000015,1.334466349,0.183030421,pos,ns,-0.000149441,0.000439879,-0.339731575,0.734288739,neg,ns,0.134133132,0.000000829,0.0000151,0.054832227,0.956307446,pos,ns,0.981912103,Onecut2,Onecut2_threeUTR,18,64396350,64396399,64396398,64396399,50,+,TACTATGAACCTGGGCATGTTGGCAATGCAGACCGCGCAATTCCTTACCG,3' UTR,18,64340020,64400987,60968,1,Onecut2-201,56330,Onecut2-201,Onecut2,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,19,225631,ENSMUSG00000045991,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18150,cg00611149,0.0000148,0.0000023,6.4355964,4.67E-10,gain,yes,-0.00000522,0.00000391,-1.334465708,0.183030631,neg,ns,0.002600194,0.001144919,2.271072678,0.023828101,pos,ns,1.622910577,-0.0000594,0.0000394,-1.50775485,0.132635681,neg,ns,0.035450383,Hsd17b12,Hsd17b12_Intron,2,94243768,94243817,94243768,94243769,50,-,CGTCTCCAGGCGAAGTCACGATTCCTTCTCAGTTCGGAATGAACTGTGAC,"Intron (Mir670hg-205/Mir670hg-205, intron 2 of 5)",2,94032689,94157964,125276,2,Hsd17b12-201,-85853,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,14,19,56348,ENSMUSG00000027195,conserved gene but different region,2,94243768,94243904,137,*,137,10,0.525547445,1.064491065,0.072992701,0.00000123,CpGisland,TRUE,U13,Hc-P
7613,cg26912910,-0.00000315,0.00000106,-2.980727929,0.003103302,loss,ns,0.0000024,0.0000018,1.334397885,0.183052821,pos,ns,0.000333395,0.000526173,0.633622399,0.526794484,pos,ns,0.278358781,-0.0000238,0.0000181,-1.312665264,0.190266734,neg,ns,0.970268841,Zbtb20,Zbtb20_Intron,16,43466427,43466476,43466475,43466476,50,-,TAAGCAAAATTTCCAAACCATTGAACTGAATTGCAACTTATGCACAGCCG,"Intron (Zbtb20-211/Zbtb20, intron 4 of 4)",16,42907542,43569781,662240,1,Zbtb20-211,558885,Zbtb20-209;Zbtb20-211;Zbtb20-217;Zbtb20-218;Zbtb20-204;Zbtb20-215;Zbtb20-201;Zbtb20-203;Zbtb20-214;Zbtb20-213;Zbtb20-219;Zbtb20-216,Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,98,56490,ENSMUSG00000022708,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26639,cg00259292,-0.0000153,0.0000117,-1.30784397,0.191895249,loss,ns,-0.0000266,0.0000199,-1.334363313,0.183064133,neg,ns,-0.0072389,0.005830274,-1.241605542,0.215320735,neg,ns,0.666914147,-0.00003,0.000200503,-0.149577885,0.881194923,neg,ns,0.830478536,Pex14,Pex14_Intron,4,149056587,149056636,149056587,149056588,50,-,CGTTTCGAATTCCTGCCAAACAATGGTTCAGAAAAATGAAGCTCTATTTT,"Intron (Pex14-201/Pex14, intron 2 of 8)",4,148960535,149099876,139342,2,Pex14-201,43240,Pex14-201;Pex14-202;Pex14-205;Pex14-203;Pex14-204,Pex14;Pex14;Pex14;Pex14;Pex14,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,41,48,56273,ENSMUSG00000028975,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18804,cg11104247,-0.0000059,0.000011,-0.536480114,0.592011547,loss,ns,0.0000249,0.0000187,1.334356195,0.183066462,pos,ns,-0.00549953,0.00546926,-1.005534687,0.315423679,neg,ns,0.501105707,0.000152978,0.000188087,0.813335113,0.416650184,pos,ns,0.905040192,Gm9290,Gm9290_Intergenic_downstream,14,97490354,97490403,97490354,97490355,50,+,CGATGATCATAATTGAGTAACATTAAATTTAGTTTATTGAACAGCAGTCC,Distal Intergenic,14,97665672,97666291,620,2,Gm9290-201,175888,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,10,668659,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21690,cg08165785,-0.00000776,0.00000503,-1.543270132,0.123785419,loss,ns,0.0000114,0.00000855,1.334052721,0.18316578,pos,ns,0.00551784,0.002503482,2.204065842,0.028254393,pos,ns,1.548914026,-0.000150069,0.0000861,-1.743076784,0.082311696,neg,ns,0.863322044,Zfhx3,Zfhx3_Intron,8,108846784,108846833,108846784,108846785,50,+,CGCTTGCTGGTTGATTTAACGTTCAGTAAAATCCATGCTGAGCTCTCCAT,"Intron (Zfhx3-204/Zfhx3, intron 9 of 15)",8,107942644,108961630,1018987,1,Zfhx3-204,904140,Zfhx3-204;Zfhx3-201,Zfhx3;Zfhx3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,114,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15535,cg00204462,-0.0000143,0.00000295,-4.868933741,0.00000179,loss,yes,-0.00000667,0.000005,-1.333958771,0.183196535,neg,ns,-0.000270808,0.00146595,-0.184731812,0.853560187,neg,ns,0.06876585,-0.0000586,0.0000504,-1.161869077,0.246182409,neg,ns,0.935255086,Ep300,Ep300_Exon,15,81634036,81634085,81634084,81634085,50,-,TCCAAGGGGAGAGCGTTTCTTTGGGGGATGACCCTTCCCAGCCTCAAACG,"Exon (Ep300-201/Ep300, exon 20 of 31)",15,81585397,81652077,66681,1,Ep300-201,48639,Ep300-201;Ep300-207;Ep300-204,Ep300;Ep300;Ep300,0;0;-2063,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,7,328572,ENSMUSG00000055024,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15715,cg24765266,0.000024,0.00000255,9.434398214,9.68E-19,gain,yes,0.00000578,0.00000433,1.3337827,0.183254184,pos,ns,0.004426519,0.001268712,3.488986405,0.000555071,pos,ns,3.255651592,0.0000366,0.0000436,0.838103965,0.402618041,pos,ns,0.05790868,Tcf20,Tcf20_Intron,15,82963746,82963795,82963746,82963747,50,+,CGATTTACTGGCTGCAATTCCCGGCGCCCCTCGATGGCACTTAAGAGAGA,"Intron (Tcf20-203/Tcf20, intron 1 of 1)",15,82857130,82987872,130743,2,Tcf20-203,24077,Tcf20-204;Tcf20-203,Tcf20;Tcf20,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,13,21411,ENSMUSG00000041852,mapped to different genes,15,82963194,82964023,830,*,830,133,0.824096386,0.949281095,0.160240964,2.63E-132,CpGisland,TRUE,NA,NRS
16248,cg14360468,-0.00000324,0.00000133,-2.437380402,0.015356093,loss,ns,0.00000301,0.00000226,1.333716159,0.183275974,pos,ns,0.000746481,0.000661978,1.127652502,0.260338728,pos,ns,0.584461222,-0.00000581,0.0000228,-0.255326316,0.798640393,neg,ns,0.97145367,Polr3b,Polr3b_Intron,10,84658043,84658092,84658043,84658044,50,+,CGCCTAATTAGAATTCTCTGACATTAAGCTAATTGGTGAAACTGTATTTC,"Intron (Polr3b-201/Polr3b, intron 12 of 27)",10,84622292,84727178,104887,1,Polr3b-201,35751,Polr3b-201;Polr3b-202;Polr3b-204,Polr3b;Polr3b;Polr3b,0;35750;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,5,70428,ENSMUSG00000034453,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10555,cg25410167,-0.0000609,0.0000163,-3.728404066,0.000229035,loss,ns,0.000037,0.0000277,1.333686837,0.183285577,pos,ns,-0.012641992,0.008126444,-1.555661006,0.120809012,neg,ns,0.917900668,0.000231366,0.000279468,0.827881208,0.408374651,pos,ns,0.399595744,Gm47553,Gm47553_Intergenic_upstream,12,54334969,54335018,54334969,54334970,50,+,CGATCAAAGAGGTATGCATGACTCACAGCCACTAAATAAACATTGATGCC,Distal Intergenic,12,54428077,54428556,480,1,Gm47553-201,-93059,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10973,cg05191910,-0.00000704,0.00000602,-1.170015609,0.242893411,loss,ns,0.0000136,0.0000102,1.333573842,0.183322585,pos,ns,0.007475751,0.002995931,2.495301515,0.013104822,pos,ns,1.882568862,-0.000419243,0.00010303,-4.069142679,0.0000599,neg,ns,0.855120577,Nbea,Nbea_Exon,3,55934590,55934639,55934590,55934591,50,+,CGAAGAAGAGGAGCAACTTTTTCTAACGCTCTTTCAAGTTTTGCAGTGAT,"Exon (Nbea-201/Nbea, exon 34 of 58)",3,55625195,56183701,558507,2,Nbea-201,249062,Nbea-201,Nbea,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,14,26422,ENSMUSG00000027799,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15782,cg05605166,-0.00000544,0.00000254,-2.139526999,0.033173679,loss,ns,0.00000576,0.00000432,1.333501784,0.183346188,pos,ns,0.001336222,0.001264875,1.05640612,0.291605268,pos,ns,0.535204634,-0.00000312,0.0000435,-0.07162374,0.942947533,neg,ns,0.936927085,Tet3,Tet3_Exon,6,83403121,83403170,83403169,83403170,50,+,CTGAGTAGGGGGCAGCAGGCTGTCCCTGGAGGGACTAGGTGCAAATAGCG,"Exon (Tet3-202/Tet3, exon 3 of 11)",6,83362373,83441675,79303,2,Tet3-202,38505,Tet3-202;Tet3-203;Tet3-201;Tet3-204,Tet3;Tet3;Tet3;Tet3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,8,194388,ENSMUSG00000034832,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2137,cg18642035,0.0000196,0.0000105,1.866075493,0.06297499,gain,ns,-0.0000238,0.0000178,-1.333423724,0.18337176,neg,ns,-0.004170594,0.005227172,-0.797868049,0.425557813,neg,ns,0.371041432,0.0000964,0.000179762,0.536392195,0.592072222,pos,ns,0.834644886,Bhlhe22,Bhlhe22_Intergenic_downstream,3,18058591,18058640,18058639,18058640,50,-,ATCGTTAAGGCAATTAAACCTCCTGGATGTGATTAAGAAACATAATTACG,Downstream (1-2kb),3,18054174,18057517,3344,1,Bhlhe22-201,4466,Bhlhe22-201,Bhlhe22,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,6,22,59058,ENSMUSG00000025128,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
1115,cg07150211,0.00000883,0.00000538,1.641627025,0.101681384,gain,ns,0.0000122,0.00000914,1.333370596,0.183389166,pos,ns,0.00876198,0.002677596,3.272331073,0.001187019,pos,ns,2.92554239,-0.000257078,0.0000921,-2.791826276,0.005566501,neg,ns,0.886820214,Gm14513,Gm14513_Intergenic_downstream,X,11672294,11672343,11672294,11672295,50,+,CGGATAGCCCCATACATCCAGCATAAAATAATAGAATTTGTTGAGTGCCT,Distal Intergenic,20,11684002,11684124,123,2,Gm14513-201,11781,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,9,668984,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27605,cg09108203,-0.00000644,0.000004,-1.608551954,0.108732247,loss,ns,0.00000907,0.0000068,1.333342968,0.183398218,pos,ns,0.000974441,0.001993094,0.488908372,0.625252275,pos,ns,0.203944719,-0.0000401,0.0000685,-0.585516888,0.558626204,neg,ns,0.887749885,Vangl2,Vangl2_Exon,1,172008513,172008562,172008513,172008514,50,-,CGAGGGAATACACCTTGAAGCCAGACACTTTCTTGGCCAGGACGGACTTG,"Exon (Vangl2-201/Vangl2, exon 5 of 8)",1,172000960,172027295,26336,2,Vangl2-201,18733,Vangl2-201;Vangl2-202;Vangl2-203;Vangl2-205;Vangl2-206;Vangl2-204,Vangl2;Vangl2;Vangl2;Vangl2;Vangl2;Vangl2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,6,93840,ENSMUSG00000026556,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24261,cg26360022,-0.00000198,0.0000017,-1.162051788,0.246108301,loss,ns,-0.00000385,0.00000289,-1.333183665,0.183450419,neg,ns,0.000364594,0.000846311,0.430803999,0.666910275,pos,ns,0.175932591,-0.0000326,0.0000291,-1.120415935,0.263403807,neg,ns,0.957821176,Pou3f1,Pou3f1_Intergenic_upstream,4,124395794,124395843,124395842,124395843,50,+,CAAGGACTAATGAGAACTGTAATGGCTAATGGATGTTTACAGCTTCACCG,Distal Intergenic,4,124656807,124660655,3849,1,Pou3f1-201,-260964,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,24,85,18991,ENSMUSG00000090125,mapped to different genes,4,124395842,124395887,46,*,46,7,0.717391304,1.277777778,0.152173913,0.000000698,CpGisland,TRUE,U15,NS
12421,cg05337739,-0.00000589,0.00000233,-2.526501327,0.012017987,loss,ns,0.00000528,0.00000396,1.333006429,0.183508509,pos,ns,0.0000892,0.001159892,0.0769202,0.938736649,pos,ns,0.027456227,0.000069,0.0000399,1.730746046,0.084492142,pos,ns,0.061310809,Klf7,Klf7_Promoter,1,64121656,64121705,64121656,64121657,50,-,CGTGTGACCATGTAAGGTAAACAGGGGGCTCATGAAGTCACTGAGGACCA,Promoter (<=1kb),1,64079103,64122282,43180,2,Klf7-203,577,Klf7-202;Klf7-201;Klf7-203,Klf7;Klf7;Klf7,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,3,21,93691,ENSMUSG00000025959,mapped to different genes,1,64121602,64121657,56,*,56,9,0.714285714,1.272727273,0.160714286,4.27E-09,CpGisland,TRUE,U1,Pr-A
21062,cg01567039,-0.00000124,0.00000193,-0.639460469,0.522995672,loss,ns,0.00000438,0.00000328,1.333004763,0.183509055,pos,ns,0.003233759,0.000962004,3.361482915,0.000872323,pos,ns,3.059322779,-0.000101106,0.0000331,-3.056106342,0.00243732,neg,ns,0.9458318,Gm5987,Gm5987_Intergenic_upstream,5,106205341,106205390,106205389,106205390,50,-,CCGTGAGATTCAAGCTGCAGAGATTTAACTCTAATGTAAAATCATGAACG,Distal Intergenic,5,106215651,106216801,1151,1,Gm5987-201,-10310,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,4,546882,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25005,cg20650821,-0.0000001,0.00000199,-0.050260452,0.959947206,loss,ns,0.00000451,0.00000338,1.333002441,0.183509816,pos,ns,-0.000263524,0.000990545,-0.266039817,0.790385396,neg,ns,0.102161093,0.0000352,0.0000341,1.033173813,0.302327898,pos,ns,0.965281508,Fgfr2,Fgfr2_Intron,7,131497366,131497415,131497414,131497415,50,-,AAATTTATTGTTATAATTTTCCCCAAGTAATCTCCTCCATTTTCCAGGCG,"Intron (Fgfr2-217/Fgfr2, intron 2 of 6)",7,130162451,133123350,2960900,2,Fgfr2-217,1625935,Fgfr2-217;Gm45105-201,Fgfr2;Gm45105,0;-3463,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,58,79,14183,ENSMUSG00000030849,mapped to different genes,7,131497414,131497496,83,*,83,8,0.373493976,2.766666667,0.096385542,0.00000291,CpGisland,TRUE,U15,NS
21113,cg01846888,0.0000738,0.00000634,11.63512938,3.31E-26,gain,yes,-0.0000144,0.0000108,-1.332911875,0.183539505,neg,ns,0.001576806,0.003156788,0.499496844,0.617783726,pos,ns,0.209163536,-0.00000437,0.000108562,-0.040219302,0.967944179,neg,ns,0.213693092,Barhl2,Barhl2_Intron,5,106470142,106470191,106470190,106470191,50,-,CTTCAAGCTCTCTCATTATGAGGTATACCTGACGGGGACACCGAAAGCCG,"Intron (Gm26872-201/Gm26872-201, intron 1 of 1)",5,106452523,106458166,5644,2,Barhl2-201,-12025,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,27,104382,ENSMUSG00000034384,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
19154,cg23720268,0.0000534,0.0000105,5.097849785,0.000000599,gain,yes,-0.0000237,0.0000178,-1.332694211,0.183610873,neg,ns,0.002646726,0.005215565,0.507466846,0.612188123,pos,ns,0.2131151,0.000168789,0.000179363,0.941046007,0.347414001,pos,ns,0.472899357,Gm15506,Gm15506_Intron,7,98686084,98686133,98686084,98686085,50,+,CGGAGCCTCATTAGTCATGTCAGATGACATAGTTAACACTTGGGGCCAGT,"Intron (Gm15506-201/Gm15506, intron 3 of 3)",7,98682336,98702928,20593,2,Gm15506-201,16795,Gm15506-201,Gm15506,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,100040769,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12183,cg18123948,0.0000111,0.00000465,2.386365093,0.01761556,gain,ns,0.0000105,0.00000789,1.33253164,0.183664191,pos,ns,0.006628162,0.002312769,2.865898878,0.004442627,pos,ns,2.352360156,-0.00013809,0.0000795,-1.736194232,0.083523016,neg,ns,0.064706695,Gata4,Gata4_Intron,14,63246122,63246171,63246170,63246171,50,+,CCTCAGACAGGTCTAAAGGTTAATAGAGCAATCACAGGGCCCTATTACCG,"Intron (Gata4-204/Gata4, intron 1 of 1)",14,63241102,63271692,30591,2,Gata4-204,25521,Gata4-202;Gata4-201;Gata4-204;Gata4-205;Gata4-206,Gata4;Gata4;Gata4;Gata4;Gata4,-874;-851;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,14463,ENSMUSG00000021944,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
2688,cg21473019,0.000000687,0.00000189,0.363897116,0.716182897,gain,ns,-0.00000427,0.00000321,-1.332465591,0.183685856,neg,ns,0.000351539,0.000939118,0.374328996,0.708415479,pos,ns,0.149711958,-0.0000158,0.0000323,-0.490230417,0.624317639,neg,ns,0.954636371,Ilf3,Ilf3_Exon,9,21393679,21393728,21393727,21393728,50,-,GTGCCTTGTCTTCTTATTCCATCCATGAATAGAAACGCTATCAGTCAACG,"Exon (Ilf3-201/Ilf3, exon 6 of 20)",9,21367871,21405360,37490,1,Ilf3-201,25808,Ilf3-201;Ilf3-203;Ilf3-206;Ilf3-213;Ilf3-210;Ilf3-202;Ilf3-207;Ilf3-204;Ilf3-208;Ilf3-209;Ilf3-216;Ilf3-211,Ilf3;Ilf3;Ilf3;Ilf3;Ilf3;Ilf3;Ilf3;Ilf3;Ilf3;Ilf3;Ilf3;Ilf3,0;0;0;0;25676;0;25147;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,11,16201,ENSMUSG00000032178,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10761,cg07392299,0.00000488,0.00000173,2.823577065,0.005056463,gain,ns,-0.00000391,0.00000293,-1.332051985,0.183821568,neg,ns,0.000401421,0.000859599,0.466986946,0.640837262,pos,ns,0.193252244,-0.000022,0.0000296,-0.743210061,0.457917373,neg,ns,0.953080808,Zfp608,Zfp608_Intergenic_upstream,18,55190526,55190575,55190574,55190575,50,-,AAAATTCAACACATCCACTTACAGAATAATAAAGGCTGTTGTTTAAAGCG,Distal Intergenic,18,54888723,54992555,103833,2,Zfp608-203,-198020,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,32,269023,ENSMUSG00000052713,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27101,cg15557003,-0.00000943,0.00000541,-1.743823138,0.082181203,loss,ns,0.0000122,0.00000918,1.332051351,0.183821776,pos,ns,0.004218386,0.00269028,1.568009667,0.117899025,pos,ns,0.928489788,-0.00027131,0.0000925,-2.93249688,0.003612932,neg,ns,0.87581454,Lrrc7,Lrrc7_threeUTR,3,158084455,158084504,158084455,158084456,50,-,CGTTGAATAACTAGGTCTACTGTGTTCTGGAAACTCTTCAGTAGTAATAC,3' UTR,3,158082891,158353433,270543,2,Lrrc7-206,268929,Lrrc7-206;Lrrc7-205;Lrrc7-204;Lrrc7-207;Lrrc7-201,Lrrc7;Lrrc7;Lrrc7;Lrrc7;Lrrc7,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,10,242274,ENSMUSG00000028176,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22115,cg02216125,-0.000000269,0.0000011,-0.244359445,0.807114101,loss,ns,0.00000249,0.00000187,1.331864542,0.183883096,pos,ns,0.001445389,0.000548667,2.634366907,0.008852684,pos,ns,2.052925028,-0.0000271,0.0000189,-1.437314955,0.151637092,neg,ns,0.968446451,Eif4g2,Eif4g2_Exon,7,111077259,111077308,111077307,111077308,50,+,TTTGGTCCATTGTCAAGAAAAGCCTTGCGAGGAACCCAATGGTGTTCTCG,"Exon (Eif4g2-213/Eif4g2, exon 11 of 22)",7,111067750,111083030,15281,2,Eif4g2-213,5722,Eif4g2-213;Eif4g2-206;Eif4g2-207;Eif4g2-208;Eif4g2-214;Eif4g2-202;Eif4g2-204;Eif4g2-211;Eif4g2-210;Eif4g2-209;Eif4g2-203;Eif4g2-201;Eif4g2-212;Eif4g2-205,Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2,0;0;0;0;-3010;-2560;-1874;-1050;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,20,22,13690,ENSMUSG00000005610,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22554,cg10839301,-0.00000397,0.00000206,-1.925032133,0.055140126,loss,ns,-0.00000467,0.0000035,-1.331853412,0.18388675,neg,ns,-0.000853354,0.001026273,-0.831508157,0.406326639,neg,ns,0.391124705,0.0000727,0.0000353,2.06047109,0.040187666,pos,ns,0.960524383,Gm13973,Gm13973_Intron,2,115126851,115126900,115126899,115126900,50,+,GTGCTTCATAACACCCCATGTGTGTGTTTATCTCATGATAACCACACTCG,"Intron (Gm28494-201/Gm28494-201, intron 1 of 3)",2,115036419,115037312,894,2,Gm13973-201,-89539,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,13,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17913,cg13410722,0.00000811,0.00000221,3.676397504,0.000278712,gain,ns,-0.00000499,0.00000375,-1.331811147,0.183900626,neg,ns,0.000842152,0.001098383,0.766719323,0.443831897,pos,ns,0.35278149,-0.0000932,0.0000378,-2.467320746,0.014152912,neg,ns,0.935966415,Gm18043,Gm18043_Intergenic_upstream,10,92445227,92445276,92445275,92445276,50,+,TAAATCTGTATCTCTATAACCAGTTCCATTTCCGAATAATTTCTCTGTCG,Distal Intergenic,10,92484220,92484958,739,1,Gm18043-201,-38944,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,100416329,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22066,cg26451479,0.0000873,0.00000756,11.55352782,6.43E-26,gain,yes,-0.0000171,0.0000128,-1.331758305,0.183917975,neg,ns,0.012572071,0.003761119,3.342641194,0.000931518,pos,ns,3.030808922,-0.000327781,0.000129345,-2.534171319,0.011763417,neg,ns,0.067731084,Grm7,Grm7_Exon,6,110645894,110645943,110645894,110645895,50,+,CGTCCTGACTTTGATGAAGTTCCCCTGCTGCGTGCTGGAGGTGCTCCTGT,Promoter (<=1kb),6,110645581,111497090,851510,1,Grm7-204,313,Grm7-204;Grm7-201;Grm7-202,Grm7;Grm7;Grm7,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,6,108073,ENSMUSG00000056755,conserved gene and region,6,110645761,110646072,312,*,312,31,0.705128205,0.79940491,0.099358974,8.47E-24,CpGisland,TRUE,U13,Hc-P
13364,cg23973694,0.000014,0.00000547,2.551803591,0.011196334,gain,ns,0.0000124,0.0000093,1.331693091,0.183939388,pos,ns,0.003883543,0.002724452,1.425440378,0.155036032,pos,ns,0.809567355,-0.000165707,0.0000937,-1.768599138,0.077944172,neg,ns,0.052162157,Nr2f2,Nr2f2_Intergenic_downstream,7,70346480,70346529,70346480,70346481,50,+,CGGGTAGATGGCACAATTTTCTAACATTTAGAGAGAGGAACCCACGCTGG,Distal Intergenic,7,70353074,70355237,2164,2,Nr2f2-203,8708,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,19,69,11819,ENSMUSG00000030551,mapped to different genes,7,70346198,70346481,284,*,284,24,0.658450704,0.780756014,0.084507042,8.55E-17,CpGisland,TRUE,U9,En-Pp
26596,cg22985336,-0.000000558,0.00000111,-0.500846261,0.616834743,loss,ns,0.00000252,0.00000189,1.331514888,0.183997911,pos,ns,0.001032713,0.000554909,1.861047788,0.063683935,pos,ns,1.195970112,-0.0000409,0.0000191,-2.144765265,0.032748621,neg,ns,0.973638362,Pex14,Pex14_Intron,4,148967287,148967336,148967335,148967336,50,-,ATATTCTGAGGTTGGGAGCCTTTCCGTAAAAACATAATTAATTGAGGCCG,"Intron (Gm17029-201/Gm17029-201, intron 2 of 2)",4,148960535,149099876,139342,2,Pex14-201,132540,Pex14-201;Pex14-202,Pex14;Pex14,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,41,48,56273,ENSMUSG00000028975,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19640,cg15714292,-0.0000404,0.0000108,-3.75193933,0.000209413,loss,ns,0.0000243,0.0000183,1.331479945,0.184009388,pos,ns,-0.005050506,0.005353742,-0.943360121,0.346231348,neg,ns,0.460633613,-0.000211181,0.000184115,-1.147007084,0.252263184,neg,ns,0.75244643,Gm28267,Gm28267_Intergenic_upstream,9,100252401,100252450,100252401,100252402,50,+,CGCCTCAGACCACTGCAAATCACCTACTTTATAGAGGCAGTAAAATTGTG,Distal Intergenic,9,100404495,100404759,265,1,Gm28267-201,-152045,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,29,29,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11346,cg11508089,0.0000434,0.00000929,4.666355805,0.00000457,gain,ns,0.000021,0.0000158,1.331461566,0.184015425,pos,ns,0.005316813,0.004625395,1.149483029,0.251242914,pos,ns,0.599906178,0.0000453,0.000159067,0.284498792,0.776218109,pos,ns,0.543915336,Pcdh7,Pcdh7_fiveUTR,5,57721991,57722040,57722039,57722040,50,+,AGGTATGATAGTGTCAATGAGAAGCTGTCAGACAGCCCAAGCATGGGGCG,5' UTR,5,57717967,58133230,415264,1,Pcdh7-203,4024,Pcdh7-203;Pcdh7-201;Pcdh7-202;Pcdh7-205;Pcdh7-206;Pcdh7-207;Pcdh7-204,Pcdh7;Pcdh7;Pcdh7;Pcdh7;Pcdh7;Pcdh7;Pcdh7,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,13,54216,ENSMUSG00000029108,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
4497,cg20513398,-0.00000959,0.00000803,-1.194417755,0.233227682,loss,ns,0.0000182,0.0000136,1.331333668,0.184057439,pos,ns,0.001602142,0.003994635,0.401073302,0.688642463,pos,ns,0.162006202,-0.0000024,0.000137375,-0.017462585,0.986078815,neg,ns,0.833722083,Soga3,Soga3_Exon,10,29196838,29196887,29196886,29196887,50,+,CAGATCAACGAGCTCAGCGGCAAGGTCATGCAGCTGCAGTACGAGAACCG,"Exon (Soga3-201/Soga3, exon 6 of 7)",10,29143839,29199630,55792,1,Soga3-201,52999,Gm49353-201;Soga3-201;Soga3-203;Soga3-204,Gm49353;Soga3;Soga3;Soga3,-2067;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,67412,ENSMUSG00000038916,conserved gene and region,10,29196624,29197524,901,*,901,72,0.615982242,0.842449743,0.07991121,2.10E-47,CpGisland,TRUE,U14,Hc-H
22347,cg16573711,-0.00000956,0.0000529,-0.180782106,0.85665674,loss,ns,0.000119578,0.0000898,1.331285874,0.184073141,pos,ns,0.001182871,0.026314703,0.04495096,0.964175339,pos,ns,0.015843981,0.001599833,0.00090496,1.76784901,0.078069778,pos,ns,0.772383813,Btbd10,Btbd10_Intron,7,113323345,113323394,113323345,113323346,50,+,CGAGCAAGTTCTGCCTAGGTTAGTCTGTTTAGAGCAAACTGGCTTTGCAA,"Intron (Btbd10-202/Btbd10, intron 6 of 7)",7,113315626,113347285,31660,2,Btbd10-202,23891,Btbd10-202;Btbd10-201;Btbd10-203;Btbd10-205;Btbd10-206;Gm15994-201,Btbd10;Btbd10;Btbd10;Btbd10;Btbd10;Gm15994,0;0;0;0;7915;-864,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,6,68815,ENSMUSG00000038187,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4800,cg07955774,-0.0000316,0.0000104,-3.02804355,0.002668169,loss,ns,0.0000236,0.0000177,1.33114996,0.184117798,pos,ns,0.003382122,0.005191151,0.651516792,0.515195636,pos,ns,0.288027824,-0.000115302,0.000178523,-0.645864553,0.518844872,neg,ns,0.597833436,Cstad,Cstad_Intron,2,30606845,30606894,30606845,30606846,50,-,CGTCCAAATGGTTTGCATGTCTGCATTTTTTACTGCTCCGTTTAATATGT,"Intron (Cstad-201/Cstad, intron 1 of 1)",2,30595040,30608943,13904,1,Cstad-201,11805,Cstad-201;Cstad-202,Cstad;Cstad,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,7,78617,ENSMUSG00000047363,mapped to different genes,2,30606837,30607020,184,*,184,19,0.60326087,1.135064935,0.10326087,4.44E-15,CpGisland,TRUE,NA,NRS
8794,cg05965853,-0.00000382,0.0000016,-2.392492402,0.017329535,loss,ns,-0.00000361,0.00000271,-1.330989811,0.184170429,neg,ns,-0.001518247,0.000794796,-1.910234707,0.057025534,neg,ns,1.243930643,0.0000415,0.0000273,1.519978113,0.129535727,pos,ns,0.964859182,Oga,Oga_Intron,19,45761924,45761973,45761972,45761973,50,+,TGTGCGACCTGCAAAGAAACAATGTGAAGTGTATACCTAGAGCCGCTGCG,"Intron (Oga-201/Oga, intron 11 of 15)",19,45750259,45783551,33293,2,Oga-201,21578,Oga-201;Oga-204;Oga-203;Oga-206,Oga;Oga;Oga;Oga,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,21,76055,ENSMUSG00000025220,conserved gene but different region,19,45761874,45761986,113,*,113,12,0.575221239,1.308880309,0.10619469,8.79E-10,CpGisland,TRUE,U10,Tr-S
25017,cg10491556,0.0000145,0.00000274,5.296906937,0.000000224,gain,yes,0.00000619,0.00000465,1.330922376,0.184192594,pos,ns,0.000550009,0.00136176,0.403895368,0.686568141,pos,ns,0.163316353,0.0000173,0.0000468,0.368524995,0.712733349,pos,ns,0.06802716,Fgfr2,Fgfr2_Exon,7,131543282,131543331,131543282,131543283,50,-,CGCACTACCTGGAGCGCTCCCCAGCCTGGTGGTACCCCTACACCCTGACC,"Exon (Hmx3-201/Hmx3, exon 1 of 2)",7,130162451,133123350,2960900,2,Fgfr2-217,1580019,Fgfr2-217;Hmx3-201,Fgfr2;Hmx3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,79,14183,ENSMUSG00000030849,mapped to different genes,7,131542631,131543412,782,*,782,92,0.739130435,0.916717635,0.117647059,5.66E-77,CpGisland,TRUE,U3,Pr-B
27285,cg27450404,0.00000836,0.00000508,1.646295403,0.100716331,gain,ns,-0.0000115,0.00000863,-1.330914541,0.18419517,neg,ns,-0.004324467,0.002527899,-1.710695932,0.088137672,neg,ns,1.054838424,0.000108653,0.0000869,1.249826727,0.212305575,pos,ns,0.883442061,Prrx1,Prrx1_threeUTR,1,163254002,163254051,163254002,163254003,50,-,CGTTATGAAGCCCCTCGTGTAAACAACATCTTGGGAGGGACGAGGATCTA,3' UTR,1,163245119,163313672,68554,2,Prrx1-202,59621,Prrx1-202;Prrx1-201;Prrx1-205;Prrx1-204,Prrx1;Prrx1;Prrx1;Prrx1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,11,18933,ENSMUSG00000026586,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17241,cg01134518,0.0000398,0.00000952,4.183503889,0.0000374,gain,ns,0.0000215,0.0000162,1.330839814,0.184219734,pos,ns,0.007445478,0.004736238,1.57202365,0.116965114,pos,ns,0.931943651,-0.0000382,0.000162879,-0.234774159,0.81453902,neg,ns,0.151426687,Nog,Nog_Exon,11,89301332,89301381,89301380,89301381,50,-,CACTTGCACTCGGAAATGATGGGGTACTGGATGGGAATCCAGCCGCAGCG,Promoter (<=1kb),11,89300638,89302332,1695,2,Nog-201,951,Nog-201,Nog,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,36,18121,ENSMUSG00000048616,conserved gene and region,11,89301268,89301419,152,*,152,13,0.664473684,0.775510204,0.085526316,2.34E-09,CpGisland,TRUE,U13,Hc-P
3392,cg15362955,-0.00000376,0.00000124,-3.031702852,0.002636969,loss,ns,0.0000028,0.00000211,1.330619833,0.184292061,pos,ns,0.001043306,0.000616776,1.691548216,0.09173709,pos,ns,1.037455041,-0.0000422,0.0000212,-1.988394696,0.047647145,neg,ns,0.02583892,Bcl6,Bcl6_fiveUTR,16,23988623,23988672,23988671,23988672,50,-,ACCCCAGTTCTAAGAATCAACAGAGCTCAATTCTCGGAATTTGAGCTTCG,Promoter (<=1kb),16,23965052,23988852,23801,2,Bcl6-201,180,Bcl6-201;Gm37419-201,Bcl6;Gm37419,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,TRUE,FALSE,fiveUTR,4,18,12053,ENSMUSG00000022508,conserved gene and region,16,23988657,23989142,486,*,486,53,0.639917696,1.065348664,0.109053498,1.22E-42,CpGisland,TRUE,U1,Pr-A
23032,cg07187989,-0.0000138,0.0000122,-1.136318441,0.256700976,loss,ns,0.0000275,0.0000207,1.330118472,0.18445698,pos,ns,-0.005619058,0.006064659,-0.926524952,0.354893986,neg,ns,0.449901361,-0.0000348,0.000208563,-0.166919503,0.867542213,neg,ns,0.674870418,Best3,Best3_Exon,10,116992533,116992582,116992533,116992534,50,+,CGTTACTTTGAAAAATTATCAATTTACTGTGACAGATATGCTGAACAAAT,"Exon (Best3-201/Best3, exon 3 of 10)",10,116986314,117025040,38727,1,Best3-201,6219,Best3-201,Best3,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,382427,ENSMUSG00000020169,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23221,cg25579000,0.00000271,0.00000572,0.472996995,0.636548187,gain,ns,-0.0000129,0.00000972,-1.330068544,0.18447341,neg,ns,0.001235424,0.002846755,0.433976337,0.664607496,pos,ns,0.177434765,-0.000064,0.0000979,-0.653815629,0.513715286,neg,ns,0.878146123,Gm12826,Gm12826_Intergenic_upstream,4,117527889,117527938,117527889,117527890,50,-,CGTGTCAGGTAATTAATGTACTCATTGTGATCATTTAATTTTATGGCAGG,Distal Intergenic,4,117513823,117514201,379,2,Gm12826-201,-13737,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,105244665,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19180,cg10425597,-0.0000312,0.00000577,-5.397916284,0.000000134,loss,yes,-0.000013,0.00000981,-1.329950521,0.184512251,neg,ns,0.000106985,0.00287371,0.037228837,0.970326508,pos,ns,0.013082104,-0.000421025,0.0000988,-4.260242953,0.0000271,neg,ns,0.753556629,Thra,Thra_Exon,11,98764390,98764439,98764438,98764439,50,+,CAAGCTGCTGATGAAGGTGACTGACCTCCGCATGATCGGGGCCTGCCACG,"Exon (Thra-201/Thra, exon 9 of 10)",11,98741811,98769006,27196,1,Thra-201,22579,Nr1d1-201;Nr1d1-202;Thra-201;Thra-202;Thra-203,Nr1d1;Nr1d1;Thra;Thra;Thra,0;5987;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,13,18,21833,ENSMUSG00000058756,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20889,cg24375227,0.0000105,0.00000263,4.003355623,0.0000782,gain,ns,-0.00000594,0.00000447,-1.3299391,0.18451601,neg,ns,0.00312468,0.001308379,2.388207724,0.017529111,pos,ns,1.756240106,-0.0000402,0.000045,-0.893736572,0.372156167,neg,ns,0.072688772,Pax6,Pax6_Exon,2,105682418,105682467,105682418,105682419,50,-,CGTGCAGCTAGTTTTATTTTAAAGACAAATGTCAGAGAGGCTCATCATAT,Promoter (<=1kb),2,105682463,105692233,9771,1,Pax6-213,0,Pax6-206;Pax6-207;Pax6-210;Pax6-214;Pax6-208;Pax6-202;Pax6-205;Pax6-225;Pax6-204;Pax6-201;Pax6-203;Pax6-224;Pax6-219;Pax6-221;Pax6-213;Pax6-211;Pax6-222;Pax6-212;Pax6-215;Pax6-223;Pax6-209;Pax6-216,Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,31,78,18508,ENSMUSG00000027168,conserved gene but different region,2,105682176,105682419,244,*,244,18,0.524590164,1.074626866,0.073770492,1.12E-11,CpGisland,TRUE,NA,NRS
9215,cg20525340,-0.00000144,0.00000182,-0.788241907,0.431157555,loss,ns,0.00000412,0.0000031,1.329910905,0.18452529,pos,ns,0.001385842,0.000907463,1.527161794,0.127740416,pos,ns,0.893671673,-0.0000278,0.0000312,-0.890412422,0.373934979,neg,ns,0.958872803,Sec61b,Sec61b_Intergenic_downstream,4,47627596,47627645,47627596,47627597,50,+,CGGCTGTTATTTGTCTCAAAATGTCTTCATTCTGAGAATTGCAGACTGCA,Distal Intergenic,4,47474948,47480791,5844,1,Sec61b-203,152648,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,66212,ENSMUSG00000053317,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11821,cg15241261,-0.0000443,0.00000835,-5.306011968,0.000000214,loss,yes,0.0000189,0.0000142,1.329840917,0.184548328,pos,ns,-0.009625027,0.004157115,-2.31531422,0.021248383,neg,ns,1.672674118,0.000243083,0.000142963,1.700320037,0.090073681,pos,ns,0.783811379,Camk2a,Camk2a_Exon,18,60958584,60958633,60958584,60958585,50,+,CGTGGCATCCTGCATGCACAGACAGGAGACCGTGGACTGCCTGAAGAAGT,"Exon (Camk2a-203/Camk2a, exon 11 of 18)",18,60925618,60988152,62535,1,Camk2a-203,32966,Camk2a-203;Camk2a-201;Camk2a-207;Camk2a-204;Camk2a-202,Camk2a;Camk2a;Camk2a;Camk2a;Camk2a,0;0;31635;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,7,12322,ENSMUSG00000024617,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15281,cg11474856,0.00000731,0.00000853,0.85719022,0.392001941,gain,ns,-0.0000193,0.0000145,-1.329583706,0.184633009,neg,ns,0.02988946,0.004247142,7.037547006,1.26E-11,pos,yes,10.89929712,-0.000886899,0.000146059,-6.072206305,3.69E-09,neg,yes,0.826053357,Actn1,Actn1_Exon,12,80170694,80170743,80170742,80170743,50,+,CGTTGCCAATATCATAACCCAAGCTGATGAGGCAGGCTTTGAACTCCTCG,"Exon (Actn1-201/Actn1, exon 19 of 21)",12,80167547,80260371,92825,2,Actn1-201,89628,Actn1-201;Actn1-206;Actn1-202;Actn1-205,Actn1;Actn1;Actn1;Actn1,0;0;0;-543,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,10,109711,ENSMUSG00000015143,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11058,cg24351845,-0.00000281,0.0000109,-0.257853617,0.796690973,loss,ns,0.0000246,0.0000185,1.329487224,0.184664782,pos,ns,0.001544425,0.005426123,0.284627793,0.776119357,pos,ns,0.110071485,0.00000659,0.000186604,0.035306769,0.971857849,pos,ns,0.590808265,Ints6l,Ints6l_Exon,X,56480899,56480948,56480947,56480948,50,+,CCTTTGAATTCCCCTCTGCCTGGAAGTGAACTAACCAAAGAACCTTTTCG,"Exon (Ints6l-204/Ints6l, exon 5 of 16)",20,56454857,56507840,52984,1,Ints6l-204,26042,Ints6l-204;Ints6l-201;Ints6l-202;Ints6l-207;Ints6l-203;Ints6l-206,Ints6l;Ints6l;Ints6l;Ints6l;Ints6l;Ints6l,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,236790,ENSMUSG00000035967,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2606,cg06198109,-0.0000195,0.00000531,-3.67518284,0.000279985,loss,ns,-0.000012,0.00000902,-1.329474003,0.184669136,neg,ns,0.001290066,0.002643101,0.488087951,0.625832587,pos,ns,0.203541827,-0.000117737,0.0000909,-1.295296142,0.196181846,neg,ns,0.955868134,Fam131a,Fam131a_fiveUTR,16,20695084,20695133,20695132,20695133,50,+,GCCAGCATGCCTATGATTTCTGTGCTGGGCAAAATGTTTCTGTGGCAGCG,5' UTR,16,20693241,20699309,6069,1,Fam131a-204,1843,Eif4g1-201;Eif4g1-206;Eif4g1-202;Eif4g1-217;Eif4g1-203;Eif4g1-222;Eif4g1-205;Eif4g1-204;Eif4g1-210;Fam131a-204;Fam131a-205;Fam131a-202;Fam131a-201;Fam131a-203,Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Fam131a;Fam131a;Fam131a;Fam131a;Fam131a,0;0;0;0;0;0;0;0;0;0;0;0;0;-1042,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,1,78408,ENSMUSG00000050821,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
6164,cg22560410,0.0000511,0.00000521,9.811375997,5.76E-20,gain,yes,-0.0000118,0.00000884,-1.329360008,0.184706681,neg,ns,0.003433572,0.002590749,1.325320204,0.186040896,pos,ns,0.730391577,0.0000377,0.0000891,0.42312974,0.672493991,pos,ns,0.119357158,Nrg2,Nrg2_fiveUTR,18,36197131,36197180,36197131,36197132,50,+,CGGCAGCGCTGAGCAGCAAACCTGCCGCATCTGGCCAGGCCATTTGGGGG,Promoter (<=1kb),18,36017652,36197380,179729,2,Nrg2-203,200,Nrg2-203;Nrg2-201,Nrg2;Nrg2,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,20,100042150,ENSMUSG00000060275,conserved gene but different region,18,36197082,36197458,377,*,377,34,0.694960212,0.74692617,0.090185676,1.48E-24,CpGisland,TRUE,U3,Pr-B
24188,cg06779064,-0.0000721,0.00000553,-13.02123198,3.24E-31,loss,yes,-0.0000125,0.0000094,-1.329191163,0.184762302,neg,ns,0.010082747,0.002754137,3.660946584,0.000295323,pos,ns,3.529702296,-0.000105058,0.0000947,-1.109208213,0.268200109,neg,ns,0.66347909,Tnrc6a,Tnrc6a_Exon,7,123188796,123188845,123188844,123188845,50,-,TCATCCTTGAACACCACGCTGCCTTCAACTAGTGCCTGGTCATCCATTCG,"Exon (Tnrc6a-201/Tnrc6a, exon 20 of 24)",7,123124177,123193987,69811,1,Tnrc6a-203,64619,Tnrc6a-203;Tnrc6a-201;Tnrc6a-205;Tnrc6a-208,Tnrc6a;Tnrc6a;Tnrc6a;Tnrc6a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,17,24,233833,ENSMUSG00000052707,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4074,cg12589577,-0.000034,0.00000944,-3.603518323,0.000365595,loss,ns,0.0000213,0.000016,1.329184432,0.18476452,pos,ns,-0.009571558,0.004698555,-2.037127993,0.042486364,neg,ns,1.371750435,-0.0000333,0.000161583,-0.206358891,0.836646044,neg,ns,0.780839164,Gm45647,Gm45647_Intergenic_upstream,8,26718930,26718979,26718978,26718979,50,-,GATCAATCATTGGGACTTTTATCTACATAAATGCCACTAAACTCAGCTCG,Distal Intergenic,8,26780315,26780509,195,1,Gm45647-201,-61385,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,46,62,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19300,cg19171668,-0.0000105,0.00000333,-3.152311045,0.001778268,loss,ns,-0.00000751,0.00000565,-1.329159723,0.18477266,neg,ns,0.000757685,0.001656087,0.4575151,0.647621332,pos,ns,0.188678854,-0.0000298,0.000057,-0.523519861,0.600986566,neg,ns,0.926868138,Dock7,Dock7_threeUTR,4,98946684,98946733,98946732,98946733,50,+,AATTCTTGTTCATCCAAATCCCCGAACTTGGTTCCATAAAAACCAACACG,3' UTR,4,98936671,99120915,184245,2,Dock7-201,174182,Dock7-201;Dock7-217;Dock7-205;Dock7-204;Dock7-202;Dock7-214;Dock7-209;Dock7-213;Dock7-203;Dock7-215,Dock7;Dock7;Dock7;Dock7;Dock7;Dock7;Dock7;Dock7;Dock7;Dock7,0;0;0;0;0;0;-1479;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,9,67299,ENSMUSG00000028556,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13450,cg15843066,-0.0000139,0.00000399,-3.492713845,0.000547672,loss,ns,-0.00000901,0.00000678,-1.329109557,0.184789189,neg,ns,-0.00279126,0.001984915,-1.406236059,0.160655618,neg,ns,0.794104084,-0.0000309,0.0000683,-0.452267928,0.651392287,neg,ns,0.908927397,Mink1,Mink1_threeUTR,11,70606640,70606689,70606640,70606641,50,-,CGTCACAGGCTAGAGGAGGAGCAGCGACAGCTCGAGATCCTTCAGCAACA,3' UTR,11,70562881,70614482,51602,1,Mink1-201,43759,Mink1-201;Mink1-202;Mink1-205;Mink1-203;Mink1-204;Mink1-207;Mink1-208;Mink1-213;Mink1-210;Mink1-212;Mink1-211;Mink1-209;Mink1-206,Mink1;Mink1;Mink1;Mink1;Mink1;Mink1;Mink1;Mink1;Mink1;Mink1;Mink1;Mink1;Mink1,0;0;0;0;0;7652;0;0;0;0;0;-3049;-3362,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,7,50932,ENSMUSG00000020827,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7019,cg23486454,-0.0000134,0.00000653,-2.051375927,0.041070386,loss,ns,0.0000147,0.0000111,1.328966659,0.184836278,pos,ns,-0.00019433,0.003250853,-0.059778118,0.952370871,neg,ns,0.021193896,0.0000397,0.000111797,0.355525367,0.722437835,pos,ns,0.853727298,Zfpm2,Zfpm2_Intron,15,40658228,40658277,40658276,40658277,50,+,TATGCAGTATTTTAATATTTTGCTTATTCTTTCCCCTTGGGTGCTCTCCG,"Intron (Zfpm2-202/Zfpm2, intron 1 of 3)",15,40655035,40872723,217689,1,Zfpm2-202,3193,Zfpm2-202;Zfpm2-201;Zfpm2-204,Zfpm2;Zfpm2;Zfpm2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,41,22762,ENSMUSG00000022306,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21532,cg20166706,-0.000008,0.0000039,-2.05269284,0.040941561,loss,ns,0.0000088,0.00000662,1.328908246,0.184855529,pos,ns,-0.0036248,0.001939161,-1.869262455,0.062529009,neg,ns,1.203918456,0.000112068,0.0000667,1.680485814,0.093870134,pos,ns,0.863937889,Bsn,Bsn_Exon,9,108112262,108112311,108112310,108112311,50,+,GCACTGTACTGGGCCAGGCTGGCCTCCTGGAAGCCAACTGCATCTCCCCG,"Exon (Bsn-201/Bsn, exon 5 of 12)",9,108096022,108190384,94363,2,Bsn-201,78073,Bsn-201;Bsn-202,Bsn;Bsn,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,8,12217,ENSMUSG00000032589,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7874,cg20769452,-0.000000428,0.00000145,-0.29462607,0.768476743,loss,ns,0.00000328,0.00000247,1.328889722,0.184861634,pos,ns,0.001564744,0.000723492,2.162765842,0.0313235,pos,ns,1.504129713,-0.0000792,0.0000249,-3.181383788,0.001614199,neg,ns,0.958959458,Gtdc1,Gtdc1_Intron,2,44575982,44576031,44576030,44576031,50,+,CTAAGATTCCTAATGACGGACTGCATTCGGAAAAATTAAATGGCATTCCG,"Intron (Gtdc1-203/Gtdc1, intron 7 of 10)",2,44564412,44861622,297211,2,Gtdc1-203,285591,Gtdc1-203;Gtdc1-201;Gtdc1-207;Gtdc1-208;Gtdc1-205,Gtdc1;Gtdc1;Gtdc1;Gtdc1;Gtdc1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,43,227835,ENSMUSG00000036890,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15868,cg12620743,-0.000000399,0.00000591,-0.067449471,0.946267368,loss,ns,0.0000134,0.00001,1.328876868,0.184865871,pos,ns,0.002855738,0.002943782,0.970091613,0.332757102,pos,ns,0.477872667,0.0000222,0.000101236,0.219250035,0.826599569,pos,ns,0.11443414,Gm6411,Gm6411_Intron,13,83732299,83732348,83732299,83732300,50,-,CGTGGCAATGGATGAACAATAGGGCTTCAGTTCATCAGTAACAAAAGCAG,"Intron (C130071C03Rik-201/C130071C03Rik-201, intron 1 of 3)",13,83761132,83762335,1204,2,Gm6411-201,30036,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,36,623241,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
8150,cg25026799,0.00000184,0.00000254,0.725039892,0.468974474,gain,ns,0.00000574,0.00000432,1.328617647,0.184951323,pos,ns,0.002928224,0.0012653,2.314251575,0.021307359,pos,ns,1.67147038,-0.000109281,0.0000435,-2.511427864,0.012532619,neg,ns,0.943783488,Zcchc7,Zcchc7_Intron,4,44800165,44800214,44800213,44800214,50,+,GTCCAGCTCACCTGTCTCTTTGCATGGATAGTTGAAATTGATGGCTGTCG,"Intron (Zcchc7-203/Zcchc7, intron 2 of 8)",4,44756568,44932203,175636,1,Zcchc7-203,43597,Zcchc7-203;Zcchc7-207;Zcchc7-205;Zcchc7-201,Zcchc7;Zcchc7;Zcchc7;Zcchc7,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,27,27,319885,ENSMUSG00000035649,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17787,cg24466972,-0.0000598,0.00000826,-7.240590973,3.55E-12,loss,yes,-0.0000186,0.000014,-1.328550382,0.184973502,neg,ns,-0.009752772,0.004111363,-2.372150537,0.018295166,neg,ns,1.73766365,-0.0000776,0.000141389,-0.548799545,0.583538063,neg,ns,0.862972316,Son,Son_Exon,16,91664989,91665038,91665037,91665038,50,-,ACTCGATGCAATTCACTTTGTGGAACCAAGCCACAAAGTGAAAAGCATCG,"Exon (Son-204/Son, exon 7 of 7)",16,91647506,91679207,31702,1,Son-203,17483,Son-203;Son-204;Son-202;Son-208;Son-201;Son-205;Son-212;Son-207,Son;Son;Son;Son;Son;Son;Son;Son,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,31,20658,ENSMUSG00000022961,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9308,cg01771762,0.0000315,0.0000109,2.904708202,0.00394021,gain,ns,0.0000245,0.0000184,1.328528105,0.184980848,pos,ns,0.010911696,0.005400601,2.020459696,0.044195335,pos,ns,1.354623566,-0.000161858,0.000185726,-0.871488334,0.384161991,neg,ns,0.819332277,Nr4a3,Nr4a3_Exon,4,48055957,48056006,48056005,48056006,50,-,GTTTGCCTGGCAAATAAAAACTGCCCAGTAGACAAGAGACGTCGAAACCG,"Exon (Nr4a3-201/Nr4a3, exon 4 of 8)",4,48045153,48086445,41293,1,Nr4a3-201,10804,Nr4a3-201;Nr4a3-203;Nr4a3-202,Nr4a3;Nr4a3;Nr4a3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,20,18124,ENSMUSG00000028341,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11501,cg06332339,0.00000202,0.00000185,1.093573125,0.274991272,gain,ns,-0.00000417,0.00000314,-1.3283019,0.18505545,neg,ns,-0.002407,0.000920596,-2.614609704,0.009369411,neg,ns,2.028287706,0.0000295,0.0000317,0.931906468,0.352110064,pos,ns,0.98698642,Nptn,Nptn_Exon,9,58618796,58618845,58618844,58618845,50,+,CAGACAGCTGTGGGACGGTGCTCGGAAGCGCCGTGTCACCGTAAACACCG,"Exon (Nptn-212/Nptn, exon 2 of 8)",9,58582240,58651318,69079,1,Nptn-212,36556,Nptn-212;Nptn-201;Nptn-213;Nptn-206;Nptn-203;Nptn-202;Nptn-211;Nptn-207;Nptn-204,Nptn;Nptn;Nptn;Nptn;Nptn;Nptn;Nptn;Nptn;Nptn,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,20,22,20320,ENSMUSG00000032336,conserved gene and region,9,58618678,58618932,255,*,255,20,0.6,0.879917184,0.078431373,1.96E-13,CpGisland,TRUE,NA,NRS
16050,cg02055614,0.00000964,0.00000601,1.603606155,0.109819213,gain,ns,-0.0000136,0.0000102,-1.328151915,0.185104927,neg,ns,-0.00369721,0.002990864,-1.236167891,0.21733198,neg,ns,0.662876364,0.0000285,0.000102856,0.276635803,0.782244122,pos,ns,0.905571635,Bnc2,Bnc2_Exon,4,84291263,84291312,84291311,84291312,50,-,CGGAGATGCAGGCTGTCTCGATGTCCTGGACCTATGGTTCTTTCCATCCG,"Exon (Bnc2-214/Bnc2, exon 6 of 7)",4,84275095,84675034,399940,2,Bnc2-201,383722,Bnc2-201;Bnc2-202;Bnc2-214;Bnc2-218;Bnc2-215;Bnc2-222;Bnc2-216;Bnc2-213;Bnc2-219;Bnc2-206;Bnc2-211;Bnc2-205;Bnc2-217;Bnc2-207;Bnc2-212,Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,91,242509,ENSMUSG00000028487,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17922,cg18299525,0.0000464,0.0000218,2.130126971,0.033948344,gain,ns,-0.0000491,0.000037,-1.328044584,0.185140339,neg,ns,-0.0071904,0.010834875,-0.663634833,0.507417281,neg,ns,0.294634746,0.000434391,0.00037261,1.165803578,0.244590037,pos,ns,0.710291031,Irx6,Irx6_Intergenic_upstream,8,92545577,92545626,92545625,92545626,50,-,ATTGCAAAAGAGCTAACAATCATGATTAAATCATTAAATTCTTGTCTACG,Distal Intergenic,8,92674288,92680956,6669,1,Irx6-201,-128711,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,5,64379,ENSMUSG00000031738,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11134,cg13324647,-0.0000554,0.00000929,-5.962370996,6.77E-09,loss,yes,0.000021,0.0000158,1.327911416,0.185184283,pos,ns,-0.015215359,0.004622771,-3.291393628,0.001111975,neg,ns,2.953905117,0.000341433,0.000158977,2.147693312,0.032513073,pos,ns,0.733094172,Lingo1,Lingo1_Intron,9,56706706,56706755,56706754,56706755,50,+,AAATGAGGTTCCAGTTATTAGTTGATTTATTGCTCTGTCCTCAATCTGCG,"Intron (Lingo1-206/Lingo1, intron 3 of 6)",9,56618475,56796138,177664,2,Lingo1-206,89383,Lingo1-206;Lingo1-205;Lingo1-207;Lingo1-204;Lingo1-208,Lingo1;Lingo1;Lingo1;Lingo1;Lingo1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,25,235402,ENSMUSG00000049556,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16690,cg06276346,-0.00000109,0.00000181,-0.60124123,0.548118712,loss,ns,-0.00000407,0.00000307,-1.327865899,0.185199305,neg,ns,-0.001355594,0.00089842,-1.508863899,0.132352055,neg,ns,0.878269312,0.0000152,0.0000309,0.492975109,0.622379182,pos,ns,0.958929611,Add2,Add2_Exon,6,86109770,86109819,86109770,86109771,50,+,CGGTGCCCAACCCCTTCAGCCAACTCACTGACCAGGAGTTGGAGGAGTAC,"Exon (Add2-209/Add2, exon 14 of 16)",6,86028704,86124409,95706,1,Add2-209,81066,Add2-209;Add2-204;Add2-210;Add2-207;Add2-201;Add2-202;Add2-208;Add2-203,Add2;Add2;Add2;Add2;Add2;Add2;Add2;Add2,0;81023;31713;0;0;26989;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,11519,ENSMUSG00000030000,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5542,cg09097640,0.0000648,0.00000799,8.111452431,1.18E-14,gain,yes,-0.000018,0.0000136,-1.327812014,0.185217089,neg,ns,0.000841185,0.003977593,0.211480789,0.832651084,pos,ns,0.079536948,0.000133829,0.000136789,0.978356751,0.328660783,pos,ns,0.790484386,Pbx3,Pbx3_Exon,2,34224560,34224609,34224608,34224609,50,-,AAACCCCTTCTGCCAAAAGCATATTGTCCAGTCTCATTAGCTGGGGATCG,"Exon (Pbx3-202/Pbx3, exon 3 of 8)",2,34171457,34372038,200582,2,Pbx3-202,147429,Pbx3-202;Pbx3-201;Pbx3-210;Pbx3-206;Pbx3-207;Pbx3-209;Pbx3-204;Pbx3-205;Pbx3-203,Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,82,18516,ENSMUSG00000038718,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25727,cg19790367,-0.000000744,0.00000169,-0.439607733,0.660527538,loss,ns,-0.00000382,0.00000287,-1.327805535,0.185219228,neg,ns,-0.000472909,0.000841786,-0.56179241,0.574663399,neg,ns,0.240586462,-0.00000926,0.0000289,-0.319920964,0.749243754,neg,ns,0.043807097,Lhx9,Lhx9_Exon,1,138831578,138831627,138831578,138831579,50,-,CGCAAAAGGTTCCTTCTGAATTTGGCTCGTGCGTTTTGGAACCAAACCTG,"Exon (Lhx9-202/Lhx9, exon 7 of 7)",1,138825186,138842457,17272,2,Lhx9-201,10830,Lhx9-201;Lhx9-203;Lhx9-205;Lhx9-202;Lhx9-204;Lhx9-206;Lhx9-207,Lhx9;Lhx9;Lhx9;Lhx9;Lhx9;Lhx9;Lhx9,0;0;0;0;0;2032;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,12,16876,ENSMUSG00000019230,conserved gene and region,1,138831484,138831610,127,*,127,12,0.62992126,0.954887218,0.094488189,3.59E-09,CpGisland,TRUE,NA,NRS
1450,cg21476366,0.000243784,0.0000192,12.69021471,5.29E-30,gain,yes,0.0000433,0.0000326,1.327774727,0.185229397,pos,ns,-0.004374208,0.009561194,-0.457496057,0.647635002,neg,ns,0.188669688,0.001172502,0.000328809,3.565910226,0.000419824,pos,ns,0.678403727,C1ql3,C1ql3_Exon,2,13010261,13010310,13010309,13010310,50,+,TGGTTGTTTTTGCAGAGATCAGCCCACATGCTGGTGCCGTCCCCTCCGCG,"Exon (C1ql3-201/C1ql3, exon 1 of 2)",2,13003457,13011806,8350,2,C1ql3-201,1496,C1ql3-201,C1ql3,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,9,227580,ENSMUSG00000049630,conserved gene and region,2,13010298,13010656,359,*,359,37,0.679665738,0.892494793,0.103064067,6.15E-29,CpGisland,TRUE,U3,Pr-B
15250,cg20527060,-0.00000418,0.00000508,-0.822920675,0.411185672,loss,ns,0.0000115,0.00000862,1.327700468,0.185253909,pos,ns,-0.005035628,0.00252655,-1.993084706,0.047128468,neg,ns,1.326716676,-0.0000891,0.0000869,-1.025354818,0.305995225,neg,ns,0.770797495,Gm5197,Gm5197_Intron,13,80000410,80000459,80000458,80000459,50,+,CCATTCTATATAGTGTATTAAAGTCATTTTCCACATGCTACCTCAGCACG,"Intron (Gm28526-201/Gm28526-201, intron 1 of 2)",13,80098222,80099418,1197,2,Gm5197-201,98959,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,4,382780,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10704,cg12191769,-0.00000124,0.00000192,-0.642848155,0.520797815,loss,ns,-0.00000434,0.00000327,-1.32755526,0.185301848,neg,ns,-0.002477464,0.000957812,-2.586585633,0.010148728,neg,ns,1.99358839,0.0000164,0.0000329,0.498775618,0.618291195,pos,ns,0.041780915,Zfp608,Zfp608_Exon,18,54991250,54991299,54991250,54991251,50,+,CGTGAGAACAAAAATGGTGACAAGCGTATCAAGAAAATACTGATCTGGTC,"Exon (Gm4221-203/Gm4221-203, exon 2 of 2)",18,54888723,54992555,103833,2,Zfp608-203,1256,Zfp608-201;Zfp608-203,Zfp608;Zfp608,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,32,269023,ENSMUSG00000052713,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
2812,cg17070681,0.00000972,0.0000166,0.586624475,0.557882871,gain,ns,0.0000373,0.0000281,1.327385625,0.185357863,pos,ns,0.007819699,0.00824314,0.948631053,0.343547212,pos,ns,0.464013571,-0.00036452,0.000283481,-1.2858728,0.199447109,neg,ns,0.763300994,Pnisr,Pnisr_Exon,4,21874600,21874649,21874600,21874601,50,-,CGCGATCCGTGGAGAAATCTCAAAGGTCTGGTAAGAAGGCAAGCCGCAAA,"Exon (Pnisr-201/Pnisr, exon 11 of 12)",4,21847583,21876475,28893,1,Pnisr-201,27017,Pnisr-201;Pnisr-213;Pnisr-202;Pnisr-203;Pnisr-207;Pnisr-204,Pnisr;Pnisr;Pnisr;Pnisr;Pnisr;Pnisr,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,10,66625,ENSMUSG00000028248,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11661,cg14277675,0.00000373,0.00000308,1.210562829,0.226985157,gain,ns,-0.00000695,0.00000524,-1.327093104,0.185454486,neg,ns,-0.004420787,0.001533948,-2.881966749,0.004227932,neg,ns,2.373872031,0.0000738,0.0000528,1.39979708,0.16257402,pos,ns,0.915007173,Pkm,Pkm_Exon,9,59675136,59675185,59675136,59675137,50,+,CGTGGAGGCTTCTTATAAGTGTTTAGCAGCAGCTTTGATAGTTCTGACGG,"Exon (Pkm-202/Pkm, exon 9 of 11)",9,59656368,59679375,23008,1,Pkm-201,18768,Gramd2-202;Pkm-201;Pkm-202;Pkm-205;Pkm-204;Pkm-203,Gramd2;Pkm;Pkm;Pkm;Pkm;Pkm,-4959;0;0;18560;16893;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,18746,ENSMUSG00000032294,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
3640,cg15447071,-0.00000724,0.00000831,-0.871306978,0.384260825,loss,ns,-0.0000187,0.0000141,-1.327081501,0.18545832,neg,ns,-0.000376776,0.004137732,-0.091058521,0.9275049,neg,ns,0.032683787,-0.00016725,0.000142296,-1.175367867,0.240749513,neg,ns,0.867594578,Gm12067,Gm12067_Intergenic_upstream,11,24928040,24928089,24928088,24928089,50,-,GATGAATGTTGCAGGCTTTAAGTACTTTTTCCATCTCTAATGCAGTGCCG,Distal Intergenic,11,24552438,24553962,1525,2,Gm12067-201,-374127,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,26,58,100417843,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19650,cg18981688,0.0000547,0.0000102,5.352689269,0.000000169,gain,yes,-0.000023,0.0000174,-1.327042568,0.185471183,neg,ns,0.010274494,0.005087496,2.019558025,0.044289421,pos,ns,1.353699996,-0.000300156,0.000174959,-1.715584826,0.087237225,neg,ns,0.19176282,Gm28267,Gm28267_Intergenic_upstream,9,100272218,100272267,100272218,100272219,50,+,CGGGCACTTCTGTCAAAACGTTTAGCAAACAGAAAGGGGGAGAATAAAAG,Distal Intergenic,9,100404495,100404759,265,1,Gm28267-201,-132228,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,29,29,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13017,cg16157434,-0.0000163,0.00000477,-3.408670291,0.0007391,loss,ns,0.0000107,0.0000081,1.32698718,0.185489484,pos,ns,-0.006329002,0.002373249,-2.666809126,0.008059485,neg,ns,2.093692709,0.00024292,0.0000816,2.976388982,0.003146296,pos,ns,0.931194137,Lzts1,Lzts1_Intron,8,69177985,69178034,69177985,69177986,50,-,CGAATAATGACTAAGGTGGTGGGTGGAAGTACAGCAAGTTGAGACCAATT,"Intron (Lzts1-204/Lzts1, intron 1 of 3)",8,69132669,69184225,51557,2,Lzts1-204,6191,Lzts1-204;Lzts1-202;Lzts1-205;Lzts1-203,Lzts1;Lzts1;Lzts1;Lzts1,0;0;4196;6171,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,211134,ENSMUSG00000036306,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21948,cg05986494,-0.0000257,0.00000461,-5.571243372,5.49E-08,loss,yes,-0.0000104,0.00000783,-1.326926976,0.185509377,neg,ns,0.005667391,0.002294277,2.47023023,0.014040571,pos,ns,1.852615245,-0.000193992,0.0000789,-2.458710977,0.014490037,neg,ns,0.924317551,Ap1g1,Ap1g1_Exon,8,109803085,109803134,109803085,109803086,50,-,CGATGTCGGAATGTGGCAAAATTACTGTATATGCACATGCTGGGCTACCC,"Exon (Ap1g1-202/Ap1g1, exon 2 of 24)",8,109778554,109864204,85651,1,Ap1g1-202,24531,Ap1g1-202;Ap1g1-204;Ap1g1-201,Ap1g1;Ap1g1;Ap1g1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,11,16,11765,ENSMUSG00000031731,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23361,cg07703677,-0.00000119,0.0000145,-0.08202002,0.934683725,loss,ns,0.0000326,0.0000246,1.326889635,0.185521717,pos,ns,0.030207041,0.007201323,4.194651484,0.0000357,pos,ns,4.447131596,-0.000874075,0.000247653,-3.529435029,0.000479558,neg,ns,0.313266753,Hrk,Hrk_Intron,5,118167492,118167541,118167492,118167493,50,+,CGTCCCATTAAAATTAATGTCCATGAAGTGAGCCGTTAAAAGCGTGCAGA,"Intron (Hrk-202/Hrk, intron 1 of 1)",5,118164648,118184828,20181,1,Hrk-202,2844,Hrk-202;Hrk-201,Hrk;Hrk,0;-2207,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,4,12123,ENSMUSG00000046607,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
11390,cg27069320,-0.0000213,0.00000482,-4.432094469,0.000013,loss,ns,-0.0000109,0.00000818,-1.326868874,0.185528578,neg,ns,-0.009083929,0.00239665,-3.790261126,0.000180819,neg,ns,3.742755242,-0.000000766,0.0000824,-0.009288265,0.992595118,neg,ns,0.921917772,Pcdh7,Pcdh7_threeUTR,5,57913286,57913335,57913334,57913335,50,-,GACTGGGTGCGCTTCCACTCCCAGAGGACAACTATGAAAGGACCACGCCG,3' UTR,5,57717967,58133230,415264,1,Pcdh7-203,195319,Pcdh7-203;Pcdh7-202;Pcdh7-205;Pcdh7-206;Pcdh7-207;Pcdh7-204,Pcdh7;Pcdh7;Pcdh7;Pcdh7;Pcdh7;Pcdh7,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,13,54216,ENSMUSG00000029108,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1079,cg24066590,0.00000505,0.00000496,1.018594589,0.309189751,gain,ns,0.0000112,0.00000842,1.32671667,0.185578882,pos,ns,0.004317318,0.002466499,1.750383161,0.081041485,pos,ns,1.091292608,-0.000197898,0.0000848,-2.333080086,0.020283341,neg,ns,0.58233556,Gm14515,Gm14515_Intergenic_upstream,X,11494500,11494549,11494548,11494549,50,-,TCTCTCTGCTTGTTCTACACGGCCTCGTAGAATTATTCTCTTGTCTCTCG,Distal Intergenic,20,11601354,11601569,216,1,Gm14515-201,-106854,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,21,28,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25439,cg16674672,-0.00000823,0.00000261,-3.152557013,0.001776817,loss,ns,0.00000589,0.00000444,1.326613886,0.185612858,pos,ns,0.000191828,0.001299701,0.147593657,0.882759409,pos,ns,0.054157645,-0.0000529,0.0000447,-1.182866175,0.237768573,neg,ns,0.922469643,Zfp281,Zfp281_Intergenic_upstream,1,136590393,136590442,136590393,136590394,50,+,CGTTACCAAGGACAACATCATAAATAAAAGTGTTTGTGAAATTTTACCTG,Distal Intergenic,1,136624901,136630053,5153,1,Zfp281-201,-34459,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,7,226442,ENSMUSG00000041483,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24344,cg06960698,0.0000323,0.00000624,5.178687931,0.000000403,gain,yes,-0.0000141,0.0000106,-1.326492791,0.185652894,neg,ns,0.005434291,0.003105641,1.749813146,0.081140004,pos,ns,1.090764977,-0.000160291,0.000106803,-1.500815079,0.134421202,neg,ns,0.114932743,Fgf14,Fgf14_Promoter,14,124677529,124677578,124677577,124677578,50,+,AGGAGTTGAAGTTTGCATTGAAAAGACTGGCTTTCCATGACGTAGCCACG,Promoter (<=1kb),14,123977907,124677127,699221,2,Fgf14-202,-402,Fgf14-202,Fgf14,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,9,14169,ENSMUSG00000025551,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
863,cg13964487,-0.00000404,0.00000148,-2.734969857,0.006597687,loss,ns,0.00000333,0.00000251,1.326460838,0.185663459,pos,ns,-0.00013655,0.000735167,-0.185740415,0.852769808,neg,ns,0.069168184,0.0000275,0.0000253,1.088328308,0.277295578,pos,ns,0.060385869,Dmtf1,Dmtf1_fiveUTR,5,9161605,9161654,9161605,9161606,50,-,CGCACTTACTTCCTGTTTTGGGTCCGGGCACTTTGGAAGAACCAGGATGG,Promoter (<=1kb),5,9118801,9161776,42976,2,Dmtf1-201,122,Dmtf1-201;Dmtf1-209;Dmtf1-202;Dmtf1-208;Dmtf1-214;Dmtf1-213;Dmtf1-204;Dmtf1-207;Dmtf1-215;Dmtf1-216;Dmtf1-211;Dmtf1-206;Dmtf1-218;Tmem243-202;Tmem243-204,Dmtf1;Dmtf1;Dmtf1;Dmtf1;Dmtf1;Dmtf1;Dmtf1;Dmtf1;Dmtf1;Dmtf1;Dmtf1;Dmtf1;Dmtf1;Tmem243;Tmem243,0;0;0;0;0;0;0;0;0;0;0;0;0;0;5872,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,11,23857,ENSMUSG00000042508,mapped to different genes,5,9161250,9161630,381,*,381,58,0.771653543,1.03338945,0.152230971,2.37E-56,CpGisland,TRUE,U1,Pr-A
15866,cg11636414,0.0000409,0.00000349,11.72347729,1.61E-26,gain,yes,-0.00000787,0.00000593,-1.326381271,0.185689769,neg,ns,0.007055235,0.001738401,4.058461738,0.0000626,pos,ns,4.203509754,-0.000105466,0.0000598,-1.764132352,0.078694564,neg,ns,0.116160483,Gm6411,Gm6411_Intron,13,83732212,83732261,83732212,83732213,50,-,CGTCTGTCAGGAGGGGACTATGAGAGGTTTGGGTGCAAATTCATTATCTC,"Intron (C130071C03Rik-201/C130071C03Rik-201, intron 1 of 3)",13,83761132,83762335,1204,2,Gm6411-201,30123,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,36,623241,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
15061,cg10625104,-0.00000183,0.00000137,-1.339389342,0.1814251,loss,ns,0.00000308,0.00000232,1.326334979,0.185705078,pos,ns,0.001129824,0.000679996,1.661515958,0.097620767,pos,ns,1.010457783,-0.0000239,0.0000234,-1.022392914,0.307392148,neg,ns,0.963906582,Slc10a7,Slc10a7_Intron,8,78696726,78696775,78696726,78696727,50,-,CGATTATCTACTGTCTTGAAATTCTTGAAGATGTCAGATTTTTAAGATTC,"Intron (Slc10a7-211/Slc10a7, intron 7 of 10)",8,78509346,78712757,203412,1,Slc10a7-211,187380,Slc10a7-211;Slc10a7-202;Slc10a7-201;Slc10a7-207;Slc10a7-209;Slc10a7-204;Slc10a7-206;Slc10a7-208;Slc10a7-205,Slc10a7;Slc10a7;Slc10a7;Slc10a7;Slc10a7;Slc10a7;Slc10a7;Slc10a7;Slc10a7,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,6,76775,ENSMUSG00000031684,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4407,cg00067520,-0.00000192,0.00000157,-1.220184008,0.223322525,loss,ns,0.00000354,0.00000267,1.326304469,0.185715168,pos,ns,0.001962803,0.000781532,2.511482335,0.012530724,pos,ns,1.902023821,-0.0000547,0.0000269,-2.035608464,0.042639796,neg,ns,0.962515494,Brpf3,Brpf3_threeUTR,17,28817492,28817541,28817540,28817541,50,+,GATTACCTGGAATTCATATCCAAGCCAATGGATTTTTCTACTATGAGGCG,3' UTR,17,28801090,28839949,38860,1,Brpf3-201,16402,Brpf3-201;Brpf3-216;Brpf3-217;Brpf3-219;Brpf3-210;Brpf3-218;Brpf3-212;Brpf3-202;Brpf3-209;Brpf3-208;Brpf3-211,Brpf3;Brpf3;Brpf3;Brpf3;Brpf3;Brpf3;Brpf3;Brpf3;Brpf3;Brpf3;Brpf3,0;0;0;0;0;0;0;7833;0;0;-795,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,7,7,268936,ENSMUSG00000063952,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11339,cg06569252,0.000034,0.0000067,5.070838704,0.000000683,gain,yes,-0.0000151,0.0000114,-1.326260642,0.185729663,neg,ns,0.004342582,0.003333708,1.30262843,0.193668503,pos,ns,0.712941003,0.0000341,0.000114646,0.297365651,0.766386532,pos,ns,0.608181643,Gm8107,Gm8107_Intergenic_downstream,X,57712056,57712105,57712104,57712105,50,+,TCAGCTGCTGTCTGCTAAGCCCTACAGAAAAGCACAATGGCTGCTGATCG,Distal Intergenic,20,57736547,57738555,2009,2,Gm8107-201,26450,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,4,666441,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13290,cg27228024,-0.0000103,0.00000422,-2.443143264,0.015117709,loss,ns,0.0000095,0.00000716,1.326154551,0.185764754,pos,ns,0.00210209,0.002098197,1.001855308,0.317194846,pos,ns,0.498673878,0.00000847,0.0000722,0.117321691,0.906681111,pos,ns,0.922906358,Gm44690,Gm44690_Intergenic_upstream,7,70003883,70003932,70003883,70003884,50,-,CGCGGCCATGCACAAAAGGGACTGATTTGCAGCAAATTTCCACTTATTTT,Distal Intergenic,7,69883979,69884360,382,2,Gm44690-201,-119572,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,15,24,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
43,cg24605853,-0.0000386,0.00000543,-7.095636256,8.80E-12,loss,yes,-0.0000122,0.00000923,-1.32611601,0.185777503,neg,ns,-0.005147597,0.002704832,-1.903111431,0.057952183,neg,ns,1.236930197,-0.0000293,0.000093,-0.314534843,0.753326443,neg,ns,0.904479973,Camsap3,Camsap3_Exon,8,3600360,3600409,3600360,3600361,50,-,CGCAATTGCCTTCTGTTTGAAGGAGTCGGGGAGCAAACCCCCCATGGTAA,"Exon (Camsap3-203/Camsap3, exon 5 of 18)",8,3587293,3609075,21783,1,Camsap3-201,13067,Camsap3-201;Camsap3-202;Camsap3-203;Camsap3-205;Camsap3-206;Camsap3-207;Camsap3-209;Camsap3-212;Camsap3-210;Camsap3-208;Camsap3-211,Camsap3;Camsap3;Camsap3;Camsap3;Camsap3;Camsap3;Camsap3;Camsap3;Camsap3;Camsap3;Camsap3,0;0;0;0;0;0;0;0;12309;-139;-1674,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,69697,ENSMUSG00000044433,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8320,cg24498145,-0.00000542,0.00000183,-2.967754619,0.003233481,loss,ns,-0.00000411,0.0000031,-1.325948883,0.185832795,neg,ns,0.000961929,0.000909007,1.058218599,0.290779674,pos,ns,0.536435954,-0.0000248,0.0000313,-0.793877286,0.427874134,neg,ns,0.104035296,Rras,Rras_Exon,7,45018132,45018181,45018132,45018133,50,-,CGTGGGCAAGAGCGCGCTGACCATCCAGTTCATCCAGGTAGTGGGCCCTC,Promoter (<=1kb),7,45017961,45021647,3687,1,Rras-201,171,Rras-201;Rras-202;Rras-203;Scaf1-206;Scaf1-201;Scaf1-204;Scaf1-203;Scaf1-205;Scaf1-202,Rras;Rras;Rras;Scaf1;Scaf1;Scaf1;Scaf1;Scaf1;Scaf1,0;0;-1289;-3728;-1769;-2001;-4571;-2275;-3196,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,20130,ENSMUSG00000038387,conserved gene and region,7,45017985,45018241,257,*,257,28,0.719844358,0.862209442,0.108949416,9.78E-23,CpGisland,TRUE,U1,Pr-A
22994,cg25163263,0.00000172,0.00000317,0.54297253,0.587538892,gain,ns,-0.00000713,0.00000538,-1.325807712,0.185879509,neg,ns,-0.001434537,0.001575367,-0.910604966,0.363211048,neg,ns,0.439840949,-0.0000889,0.0000542,-1.641087416,0.101793408,neg,ns,0.921172608,Rhbdf2,Rhbdf2_Exon,11,116601889,116601938,116601889,116601890,50,+,CGAGCTGGGGCCAACCCAGAAGTTCTCCTGCTGGATGTACTTCACGCTCT,"Exon (Rhbdf2-202/Rhbdf2, exon 11 of 19)",11,116598165,116624200,26036,2,Rhbdf2-202,22262,Aanat-204;Aanat-201;Aanat-205;Aanat-202;Rhbdf2-202;Rhbdf2-201;Rhbdf2-204;Rhbdf2-203,Aanat;Aanat;Aanat;Aanat;Rhbdf2;Rhbdf2;Rhbdf2;Rhbdf2,15457;8202;8202;6313;0;0;0;22309,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,217344,ENSMUSG00000020806,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16675,cg03701670,-0.00000457,0.00000249,-1.834009943,0.067610964,loss,ns,0.00000561,0.00000423,1.325739781,0.185901991,pos,ns,0.003054787,0.001239442,2.464647469,0.014256835,pos,ns,1.845976876,-0.0000932,0.0000426,-2.187424985,0.029458206,neg,ns,0.944231537,Srbd1,Srbd1_Intron,17,86030357,86030406,86030405,86030406,50,+,CACAAAAGATGTTTGAACGGGATCTCTTTTCATTCCTGTAACAGTAGACG,"Intron (Srbd1-205/Srbd1, intron 1 of 4)",17,85984665,86040431,55767,2,Srbd1-205,10025,Srbd1-205;Srbd1-201;Srbd1-204;Srbd1-206,Srbd1;Srbd1;Srbd1;Srbd1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,6,78586,ENSMUSG00000024135,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2158,cg16114007,0.0000227,0.0000107,2.116779308,0.035075008,gain,ns,-0.0000242,0.0000183,-1.325617357,0.185942513,neg,ns,-0.011980092,0.005347365,-2.240372712,0.02577491,neg,ns,1.588802837,0.000657595,0.000183895,3.575918461,0.000404699,pos,ns,0.707435554,Pou6f2,Pou6f2_threeUTR,13,18129065,18129114,18129113,18129114,50,+,CTGAGAGCCTGTCCCACCTGAGTCTGGGTCAGGCCAAGGGACAGGCGCCG,3' UTR,13,18121098,18382041,260944,2,Pou6f2-201,252927,Pou6f2-201;Pou6f2-202;Pou6f2-204,Pou6f2;Pou6f2;Pou6f2,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,7,18,218030,ENSMUSG00000009734,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6918,cg03497693,-0.0000059,0.00000134,-4.411669189,0.0000142,loss,ns,0.00000301,0.00000227,1.325529156,0.185971711,pos,ns,0.00112796,0.000665164,1.695762544,0.090934853,pos,ns,1.041269632,-0.0000404,0.0000229,-1.766595251,0.078280085,neg,ns,0.046200905,Cnot11,Cnot11_Exon,1,39536078,39536127,39536078,39536079,50,-,CGAGGGCCTGTCCACCGCCTTCCACCACTACTTCAGCAAGGCCGACCACT,"Exon (Cnot11-203/Cnot11, exon 2 of 8)",1,39534992,39546889,11898,1,Cnot11-203,1086,Cnot11-203;Cnot11-201;Cnot11-202;Cnot11-204,Cnot11;Cnot11;Cnot11;Cnot11,0;0;-2118;-3907,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,52846,ENSMUSG00000003135,conserved gene and region,1,39535482,39536439,958,*,958,112,0.713987474,0.917342088,0.11691023,3.22E-93,CpGisland,TRUE,U1,Pr-A
18534,cg11214667,0.0000437,0.0000109,3.990681306,0.0000823,gain,ns,0.0000246,0.0000186,1.325483728,0.185986751,pos,ns,0.015601246,0.005444025,2.865755687,0.004444584,pos,ns,2.352168877,-0.00026008,0.00018722,-1.389172334,0.165777408,neg,ns,0.161674215,Hoxb8,Hoxb8_Promoter,11,96281690,96281739,96281690,96281691,50,-,CGATCGAAGCTGCAGTTTTATAGCTGTAGAGGAAAGAACTCGTAAAATGC,Promoter (<=1kb),11,96281905,96285315,3411,1,Hoxb8-201,-215,Hoxb7-201;Hoxb8-201;Hoxb8-202;Hoxb8-203,Hoxb7;Hoxb8;Hoxb8;Hoxb8,0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,6,26,15416,ENSMUSG00000056648,mapped to different genes,11,96281580,96281823,244,*,244,15,0.471311475,1.107748184,0.06147541,1.03E-08,CpGisland,TRUE,U13,Hc-P
6280,cg23964741,-0.0000225,0.0000127,-1.773160896,0.077183879,loss,ns,0.0000285,0.0000215,1.325389749,0.186017867,pos,ns,0.007568881,0.006304212,1.200606942,0.230820313,pos,ns,0.636725975,-0.000160492,0.000216801,-0.740272238,0.459695105,neg,ns,0.864838988,Gm7252,Gm7252_Intergenic_downstream,12,36721380,36721429,36721428,36721429,50,-,CAATTCAAATGAGCAGATTTCTTTTCTTTATTACACCATTGCATTTGGCG,Distal Intergenic,12,36539357,36539812,456,1,Gm7252-201,182072,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,638858,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16497,cg24938438,-0.0000165,0.00000976,-1.688394532,0.092341154,loss,ns,0.000022,0.0000166,1.325330488,0.186037491,pos,ns,0.019065261,0.004858626,3.924002619,0.000107313,pos,ns,3.969346893,-0.000504919,0.000167088,-3.021877995,0.002721506,neg,ns,0.851415098,Sfxn5,Sfxn5_Intron,6,85218204,85218253,85218204,85218205,50,+,CGCCCACGCTTAAAAATCTAAATGCTTTTGAAAATGTTTAACCTAGTTAG,"Intron (Sfxn5-201/Sfxn5, intron 13 of 13)",6,85213049,85333422,120374,2,Sfxn5-201,115169,Sfxn5-201,Sfxn5,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,9,94282,ENSMUSG00000033720,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
395,cg08019519,-0.00000424,0.00000363,-1.168026739,0.243693499,loss,ns,-0.00000817,0.00000616,-1.325252122,0.186063442,neg,ns,0.00102889,0.001805643,0.56981958,0.569212772,pos,ns,0.244725364,-0.0000925,0.0000621,-1.488884834,0.137534288,neg,ns,0.977096266,Zfhx4,Zfhx4_Intron,3,5357973,5358022,5357973,5357974,50,+,CGATAGGAAACCAGCCACTGCTGTTTAAGTGTATCGATAAATGTACCTTT,"Intron (Zfhx4-203/Zfhx4, intron 4 of 10)",3,5218526,5413165,194640,1,Zfhx4-203,139447,Zfhx4-203;Zfhx4-201;Zfhx4-205,Zfhx4;Zfhx4;Zfhx4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,27,77,80892,ENSMUSG00000025255,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5243,cg01599380,-0.00000372,0.000000947,-3.933304659,0.000103433,loss,ns,0.00000213,0.00000161,1.325167448,0.186091487,pos,ns,0.001051377,0.000471103,2.231737122,0.026346852,pos,ns,1.579271265,-0.0000325,0.0000162,-2.008200047,0.045489198,neg,ns,0.031839709,Atxn7l1,Atxn7l1_Exon,12,33147856,33147905,33147856,33147857,50,+,CGTTTCTGGGCAAACCCTGGTCCTCCTGGATCGACGCCGCCAAATTACAC,Promoter (<=1kb),12,33147693,33251146,103454,1,Atxn7l1-201,163,Atxn7l1-201;Atxn7l1-203;Atxn7l1-212;Atxn7l1-206;Atxn7l1-204;Atxn7l1-208,Atxn7l1;Atxn7l1;Atxn7l1;Atxn7l1;Atxn7l1;Atxn7l1,0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,24,380753,ENSMUSG00000020564,conserved gene and region,12,33147823,33147930,108,*,108,9,0.611111111,0.934615385,0.083333333,0.00000176,CpGisland,TRUE,U1,Pr-A
24170,cg16864011,0.000127908,0.0000202,6.337509414,8.22E-10,gain,yes,-0.0000454,0.0000343,-1.325149831,0.186097322,neg,ns,0.023887704,0.010045112,2.378042641,0.018010711,pos,ns,1.744469141,-0.000879642,0.000345451,-2.546361697,0.011368695,neg,ns,0.252210346,Tnrc6a,Tnrc6a_threeUTR,7,123162501,123162550,123162549,123162550,50,-,ACAGATAAAGCCCAGTGTAAGCCAGCCTCAGCCTGCCAACTCTAATAACG,3' UTR,7,123123885,123162663,38779,1,Tnrc6a-209,38616,Tnrc6a-209;Tnrc6a-203;Tnrc6a-201;Tnrc6a-210,Tnrc6a;Tnrc6a;Tnrc6a;Tnrc6a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,5,24,233833,ENSMUSG00000052707,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17189,cg01823948,0.000000244,0.00000971,0.025099511,0.979991739,gain,ns,-0.0000219,0.0000165,-1.325101328,0.186113388,neg,ns,0.003411715,0.004831172,0.706187802,0.480601744,pos,ns,0.318214658,-0.000330808,0.000166144,-1.991095158,0.04734791,neg,ns,0.733074272,Nrxn3,Nrxn3_Intron,12,89112196,89112245,89112244,89112245,50,+,GCAAATGCTTGATAGTTGACCTGACATTCACTGTTGCAAGATTGGGAACG,"Intron (Nrxn3-209/Nrxn3, intron 4 of 7)",12,88722876,89261571,538696,1,Nrxn3-209,389320,Nrxn3-209;Nrxn3-213;Nrxn3-208;Nrxn3-205;Nrxn3-211;Nrxn3-201,Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,39,18191,ENSMUSG00000066392,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9971,cg03472582,-0.00000132,0.00000165,-0.801191799,0.423634266,loss,ns,0.00000371,0.0000028,1.32498778,0.186151003,pos,ns,0.001856142,0.000819704,2.264404517,0.024239703,pos,ns,1.615472703,-0.0000719,0.0000282,-2.551148055,0.011216973,neg,ns,0.96034693,Satb1,Satb1_Intron,17,51766558,51766607,51766606,51766607,50,-,TATACAAGCCATGATTCATGACAGAATTTTACATTCCATGAGAGATTACG,"Intron (Satb1-208/Satb1, intron 9 of 10)",17,51736187,51832672,96486,2,Satb1-208,66065,Satb1-208;Satb1-213;Satb1-204;Satb1-214;Satb1-203;Satb1-211;Satb1-207,Satb1;Satb1;Satb1;Satb1;Satb1;Satb1;Satb1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,28,36,20230,ENSMUSG00000023927,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1056,cg12186160,0.00000422,0.00000377,1.118674212,0.264145242,gain,ns,0.00000849,0.00000641,1.324912242,0.18617603,pos,ns,0.002303523,0.001877274,1.227057589,0.220732008,pos,ns,0.656134686,-0.0000403,0.0000646,-0.624438225,0.532799113,neg,ns,0.950432954,Vsnl1,Vsnl1_Exon,12,11326386,11326435,11326434,11326435,50,+,ATCTGGTCATCTTTGTTCTTATCCATCTTGCTGAAAATCTTGTCTACTCG,"Exon (Vsnl1-202/Vsnl1, exon 4 of 4)",12,11325242,11435640,110399,2,Vsnl1-202,109205,Vsnl1-202;Vsnl1-201,Vsnl1;Vsnl1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,6,26950,ENSMUSG00000054459,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
999,cg26644063,-0.000041,0.000009,-4.555112204,0.00000754,loss,ns,0.0000203,0.0000153,1.324882057,0.186186031,pos,ns,-0.004530054,0.004480712,-1.011012155,0.312799069,neg,ns,0.504734548,-0.00030177,0.000154091,-1.958386717,0.051081138,neg,ns,0.814141648,Sfmbt2,Sfmbt2_Exon,2,10439873,10439922,10439873,10439874,50,-,CGAGGGAAAGGCCCTATAGACCTCATTACAGTTGGTTCCTTAATAGAACT,"Exon (Sfmbt2-205/Sfmbt2, exon 8 of 23)",2,10372436,10595241,222806,1,Sfmbt2-205,67437,Sfmbt2-203;Sfmbt2-202;Sfmbt2-204;Sfmbt2-205;Sfmbt2-201,Sfmbt2;Sfmbt2;Sfmbt2;Sfmbt2;Sfmbt2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,353282,ENSMUSG00000061186,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6088,cg04984785,0.000000113,0.00000172,0.065475172,0.947837877,gain,ns,0.00000387,0.00000292,1.324870011,0.186190022,pos,ns,0.00017837,0.000855808,0.208422517,0.835035949,pos,ns,0.078294827,-0.0000359,0.0000294,-1.21987341,0.223440097,neg,ns,0.037117437,Ttll11,Ttll11_Intergenic_upstream,2,36011602,36011651,36011650,36011651,50,+,TCTTGCAATCAGGGCCTTATTCATTAGCGCATAAACAATTTTGTTTCTCG,Distal Intergenic,2,35902351,35979913,77563,2,Ttll11-203,-31689,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,7,74410,ENSMUSG00000026885,mapped to different genes,2,36011629,36011763,135,*,135,19,0.644444444,1.364361702,0.140740741,7.09E-18,CpGisland,TRUE,U3,Pr-B
13594,cg19646346,8.94E-08,0.0000066,0.013539114,0.989206389,gain,ns,-0.0000149,0.0000112,-1.324814995,0.186208252,neg,ns,-0.002631956,0.00328596,-0.800970241,0.423762329,neg,ns,0.372877653,-0.000120177,0.000113004,-1.063478875,0.288392542,neg,ns,0.855410593,Rnf103,Rnf103_threeUTR,6,71509741,71509790,71509789,71509790,50,-,AATGGTTATCAAGTCTGTGGGACTGGTACACCAGCTACCTCTTCCACCCG,3' UTR,6,71493894,71510881,16988,1,Rnf103-201,15847,Rnf103-201;Rnf103-202;Rnf103-203;Rnf103-204,Rnf103;Rnf103;Rnf103;Rnf103,0;0;0;5855,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,3,22644,ENSMUSG00000052656,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25339,cg07258946,-0.0000141,0.00000616,-2.289187448,0.022740547,loss,ns,0.0000139,0.0000105,1.324767651,0.186223941,pos,ns,-0.000196122,0.003063866,-0.064011366,0.949002433,neg,ns,0.022732674,-0.0000922,0.000105366,-0.875358956,0.382056345,neg,ns,0.731621586,Nav1,Nav1_Exon,1,135460699,135460748,135460699,135460700,50,-,CGGCCGTCTCTGCCAGGTGTCGCAGGCGGGATGTCATATTCACCAGGCTC,"Exon (Nav1-201/Nav1, exon 14 of 30)",1,135434580,135585355,150776,2,Nav1-201,124607,Nav1-201;Nav1-202;Nav1-208;Nav1-205;Nav1-209;Nav1-206;Nav1-207,Nav1;Nav1;Nav1;Nav1;Nav1;Nav1;Nav1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,11,12,215690,ENSMUSG00000009418,mapped to different genes,1,135460699,135460813,115,*,115,9,0.565217391,0.980113636,0.07826087,0.00000296,CpGisland,TRUE,U11,Tr-P
14946,cg13050201,0.00000765,0.00000673,1.135410394,0.25708048,gain,ns,0.0000152,0.0000114,1.32472031,0.18623963,pos,ns,0.01012562,0.003352049,3.020725432,0.002731585,pos,ns,2.563585353,-0.0000597,0.000115277,-0.517639464,0.605079026,neg,ns,0.309841091,Nr2f1,Nr2f1_fiveUTR,13,78195680,78195729,78195680,78195681,50,+,CGCTGAACCGCTGACAAAAAGAAAGAGAGAAAAGAGGCAATGTGCATCCA,5' UTR,13,78188973,78199757,10785,2,Nr2f1-201,4028,Nr2f1-201;Nr2f1-205;Nr2f1-203;Nr2f1-202;Nr2f1-206,Nr2f1;Nr2f1;Nr2f1;Nr2f1;Nr2f1,0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,8,55,13865,ENSMUSG00000069171,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
3409,cg12145141,1.48E-08,0.00000749,0.001975114,0.998425359,gain,ns,0.0000168,0.0000127,1.324523783,0.186304771,pos,ns,0.011550572,0.003726549,3.099536286,0.002116036,pos,ns,2.674476933,-0.000405227,0.000128156,-3.161991023,0.001722003,neg,ns,0.879724235,A830031A19Rik,A830031A19Rik_Intergenic_downstream,11,24046544,24046593,24046544,24046545,50,-,CGGGACTGGTTTTCATTTGTGCCTCTCAATGCACTTCACAATTAATTCTC,Distal Intergenic,11,24048955,24075054,26100,2,A830031A19Rik-201,28510,A830031A19Rik-201,A830031A19Rik,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,23,268391,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21545,cg04719776,0.00000282,0.00000256,1.101407938,0.271573582,gain,ns,-0.00000576,0.00000435,-1.324444508,0.186331052,neg,ns,-0.002283183,0.001275015,-1.790711227,0.074315247,neg,ns,1.128922076,0.0000159,0.0000438,0.363443431,0.716521382,pos,ns,0.936480965,Dag1,Dag1_Exon,9,108207933,108207982,108207981,108207982,50,-,CCTTGGGGCAGGGCTCCAAGGGCAGTGTGTTGTTGGTCCATTCCACCACG,"Exon (Dag1-204/Dag1, exon 4 of 4)",9,108204634,108263958,59325,2,Dag1-204,55976,Dag1-204;Dag1-201;Dag1-202;Dag1-203,Dag1;Dag1;Dag1;Dag1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,13138,ENSMUSG00000039952,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14053,cg09521722,0.0000136,0.00000277,4.893464245,0.0000016,gain,yes,-0.00000624,0.00000471,-1.324365233,0.186357335,neg,ns,0.003111524,0.001379885,2.254915891,0.024836074,pos,ns,1.604917047,-0.0000732,0.0000475,-1.541911416,0.124115264,neg,ns,0.071467978,Adgrb1,Adgrb1_fiveUTR,15,74516175,74516224,74516223,74516224,50,+,GGAAGCTCTATAAAGCCTGATGTAATCCGTAATGCAGTCTCTGGCTCCCG,Promoter (<=1kb),15,74516195,74589464,73270,1,Adgrb1-201,0,Adgrb1-201;Adgrb1-205;Adgrb1-206,Adgrb1;Adgrb1;Adgrb1,0;-214;-607,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,5,107831,ENSMUSG00000034730,conserved gene and region,15,74516202,74517009,808,*,808,101,0.742574257,0.914723816,0.125,1.74E-87,CpGisland,TRUE,U3,Pr-B
27777,cg17144424,-0.00000576,0.00000425,-1.356866551,0.175810803,loss,ns,0.00000955,0.00000722,1.324019085,0.186472134,pos,ns,0.005540595,0.002113966,2.620947693,0.009200776,pos,ns,2.036175531,-0.000179615,0.0000727,-2.470660458,0.014024026,neg,ns,0.878889577,Rrp15,Rrp15_Intergenic_upstream,1,186850638,186850687,186850638,186850639,50,-,CGAAAGTTTAATGGGCCACTATCTACTTCCTGCCAGATTAAAAACTGATG,Distal Intergenic,1,186720978,186749358,28381,2,Rrp15-201,-101329,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,11,67223,ENSMUSG00000001305,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
813,cg04847707,-0.000000443,0.000000459,-0.964249391,0.335672486,loss,ns,0.00000103,0.00000078,1.323933786,0.186500431,pos,ns,0.00035356,0.000228592,1.546687895,0.122958753,pos,ns,0.91024055,-0.0000145,0.00000786,-1.842562855,0.06634763,neg,ns,0.986648397,Chd7,Chd7_Exon,4,8827083,8827132,8827083,8827084,50,+,CGTCGGACCATTCAGTTGTATGAAATGTACTTCAAAGATCCCCAGGTAAA,"Exon (Chd7-201/Chd7, exon 12 of 38)",4,8690921,8866810,175890,1,Chd7-201,136162,Chd7-201;Chd7-202;Chd7-206,Chd7;Chd7;Chd7,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,16,320790,ENSMUSG00000041235,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20607,cg20746118,5.94E-08,0.00000326,0.018199582,0.985491344,gain,ns,0.00000733,0.00000554,1.32387508,0.186519908,pos,ns,0.002777133,0.001623096,1.711010448,0.088079518,pos,ns,1.05512507,-0.0000574,0.0000558,-1.028395932,0.304565351,neg,ns,0.930943851,Gm13876,Gm13876_Intron,2,103913017,103913066,103913065,103913066,50,-,GCATGAATCACTGTCCATAAAATCGAGTTAAGTGGATTTCATTCCACACG,"Intron (Gm13881-201/Gm13881-201, intron 1 of 1)",2,103888324,103888584,261,1,Gm13876-201,24742,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10891,cg19799050,0.000125024,0.0000165,7.598891344,3.57E-13,gain,yes,-0.000037,0.000028,-1.323784875,0.186549838,neg,ns,0.090340236,0.008188797,11.03217447,4.30E-24,pos,yes,23.36617162,-0.001532854,0.000281612,-5.443142005,0.000000107,neg,yes,0.787263773,Tcf7l2,Tcf7l2_Intron,19,55748059,55748108,55748107,55748108,50,-,TTTATTTACAGCCCATAACACTTATGAATGTTAAGATATTTGACGCCACG,"Intron (Tcf7l2-213/Tcf7l2, intron 3 of 13)",19,55741820,55933229,191410,1,Tcf7l2-213,6239,Tcf7l2-213;Tcf7l2-201;Tcf7l2-208;Tcf7l2-211;Tcf7l2-212;Tcf7l2-206;Tcf7l2-204;Tcf7l2-205;Tcf7l2-222;Tcf7l2-215;Tcf7l2-214;Tcf7l2-207;Tcf7l2-202;Tcf7l2-209;Tcf7l2-210;Tcf7l2-217,Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,55,88,21416,ENSMUSG00000024985,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11768,cg16960148,-0.0000216,0.00000914,-2.366244645,0.018584245,loss,ns,-0.0000206,0.0000155,-1.323781388,0.186550995,neg,ns,0.006199014,0.004550258,1.36234345,0.1740785,pos,ns,0.759254864,-0.000548065,0.000156483,-3.50239626,0.000528882,neg,ns,0.091980504,Mbnl1,Mbnl1_fiveUTR,3,60528735,60528784,60528783,60528784,50,+,ACCTATCTCTTTTTTCTACAGGTTGGTACTAAGAAGTGCCTTTCCTGACG,5' UTR,3,60472830,60595764,122935,1,Mbnl1-222,55905,Mbnl1-222;Mbnl1-221;Mbnl1-216;Mbnl1-220;Mbnl1-211;Mbnl1-204;Mbnl1-201;Mbnl1-209;Mbnl1-202;Mbnl1-225;Mbnl1-217;Mbnl1-203;Mbnl1-218;Mbnl1-208;Mbnl1-219;Mbnl1-214;Mbnl1-207;Mbnl1-205;Mbnl1-212,Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,36,56758,ENSMUSG00000027763,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
20613,cg19872161,-0.0000252,0.00000597,-4.212893102,0.0000331,loss,ns,0.0000134,0.0000101,1.323628309,0.186601795,pos,ns,-0.000830825,0.002971657,-0.279583227,0.779983724,neg,ns,0.10791446,-0.0000916,0.000102195,-0.896620138,0.370617396,neg,ns,0.903362365,Rsbn1,Rsbn1_Exon,3,103928487,103928536,103928487,103928488,50,+,CGTCTGTGCTGGCCTGACCCGCATCAGTAAAGAAATTCTCACCCAAGGAC,"Exon (Rsbn1-201/Rsbn1, exon 2 of 8)",3,103914120,103966613,52494,1,Rsbn1-201,14367,Rsbn1-201;Rsbn1-202;Rsbn1-203;Rsbn1-204,Rsbn1;Rsbn1;Rsbn1;Rsbn1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,16,229675,ENSMUSG00000044098,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25554,cg22302289,0.0000276,0.0000233,1.182785511,0.2378005,gain,ns,0.0000524,0.0000396,1.323597217,0.186612115,pos,ns,0.093895653,0.011593185,8.099210946,1.28E-14,pos,yes,13.89242435,-0.003187625,0.000398689,-7.995274348,2.59E-14,neg,yes,0.379573993,Ebf3,Ebf3_Intron,7,137212481,137212530,137212529,137212530,50,-,CTCATTAATTTCTCAATAAATTTGGCAATGAATTTCAATCACAGCACTCG,"Intron (Ebf3-204/Ebf3, intron 10 of 15)",7,137193673,137314445,120773,2,Ebf3-204,101915,Ebf3-204;Ebf3-201;Ebf3-202;Ebf3-203;Ebf3-208;Ebf3-205,Ebf3;Ebf3;Ebf3;Ebf3;Ebf3;Ebf3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,62,84,13593,ENSMUSG00000010476,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12367,cg08799601,-0.00000234,0.00000135,-1.734054971,0.083902465,loss,ns,0.00000303,0.00000229,1.323590347,0.186614395,pos,ns,-0.000959695,0.000670334,-1.431666965,0.153246574,neg,ns,0.814609225,0.0000191,0.0000231,0.828904087,0.407796442,pos,ns,0.959890927,Klf7,Klf7_Exon,1,64042318,64042367,64042318,64042319,50,-,CGCAGTGGTTGCATTTGAAGGGCTTTGCACCTGTGTGTTTCCTGTAGTGC,"Exon (Klf7-202/Klf7, exon 3 of 4)",1,64029447,64121491,92045,2,Klf7-202,79124,Klf7-202;Klf7-201,Klf7;Klf7,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,21,93691,ENSMUSG00000025959,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20792,cg20681197,-0.00000251,0.00000202,-1.241716466,0.215279848,loss,ns,0.00000455,0.00000344,1.323589275,0.186614751,pos,ns,0.002106505,0.001007024,2.091812011,0.037268728,pos,ns,1.428655425,-0.0000334,0.0000346,-0.964446843,0.335573685,neg,ns,0.954711923,Mrc2,Mrc2_Exon,11,105332300,105332349,105332300,105332301,50,+,CGGGAGCCTTGTGAGCTTCACCCACTGGCACCCCTTTGAGCCCAACAACT,"Exon (Mrc2-202/Mrc2, exon 8 of 30)",11,105292646,105351139,58494,1,Mrc2-202,39654,Mrc2-202;Mrc2-201;Mrc2-204,Mrc2;Mrc2;Mrc2,0;0;3248,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,17534,ENSMUSG00000020695,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2214,cg27277938,0.000103557,0.0000116,8.89002213,5.13E-17,gain,yes,-0.0000262,0.0000198,-1.323531257,0.186634009,neg,ns,0.024855104,0.005797691,4.287069282,0.0000242,pos,ns,4.616119039,-0.00085047,0.000199382,-4.265525538,0.0000265,neg,ns,0.209432301,Gm37317,Gm37317_Intergenic_upstream,3,18625946,18625995,18625946,18625947,50,+,CGTGCAGGAAGGAGAGGAACCATTAGGTCTCCCTCAGGAGCTCTGCTCCT,Distal Intergenic,3,18609808,18610831,1024,2,Gm37317-201,-15115,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,10,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
2088,cg22618711,-0.00000272,0.00000275,-0.987506303,0.324164617,loss,ns,0.00000619,0.00000467,1.323509886,0.186641102,pos,ns,0.003760317,0.001369415,2.745930196,0.006386396,pos,ns,2.194744139,-0.000117917,0.0000471,-2.503871471,0.012797912,neg,ns,0.941618939,A930004D18Rik,A930004D18Rik_Intron,2,18035793,18035842,18035793,18035794,50,+,CGATTTCCATTGTAATGGCTTATCTTTGGCTAGAATTTTACACATTGACA,"Intron (Gm13330-201/Gm13330-201, intron 2 of 2)",2,18025193,18037737,12545,2,A930004D18Rik-201,1895,A930004D18Rik-201;Skida1-205,A930004D18Rik;Skida1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,10,77940,ENSMUSG00000054057,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8986,cg26608196,-0.0000249,0.00000949,-2.625092534,0.009091972,loss,ns,0.0000213,0.0000161,1.323401811,0.18667698,pos,ns,-0.000152648,0.004723547,-0.032316371,0.974240551,neg,ns,0.011333798,0.000013,0.000162442,0.080286706,0.936061036,pos,ns,0.742219043,4931429L15Rik,4931429L15Rik_Intron,9,46495720,46495769,46495720,46495721,50,-,CGTTGGCTCTTCTATGACAACCTTATCAGGTTGGCAATTTCAGATCTGCA,"Intron (Gm47144-201/Gm47144-201, intron 3 of 4)",9,46303361,46319986,16626,2,4931429L15Rik-201,-175783,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,22,74361,ENSMUSG00000056617,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23730,cg18509253,-0.000029,0.000015,-1.934588944,0.053950418,loss,ns,-0.0000337,0.0000255,-1.323229244,0.186734277,neg,ns,-0.021523857,0.007463517,-2.883875891,0.004203061,neg,ns,2.376434317,0.000378386,0.00025667,1.474214847,0.14143852,pos,ns,0.352221769,Bahcc1,Bahcc1_Intron,11,120236276,120236325,120236324,120236325,50,+,TACAATCAATAAAATTACTCGCTTAATTAGCATGGTTATTCGGTTAAGCG,"Intron (Bahcc1-203/Bahcc1, intron 1 of 27)",11,120232947,120292282,59336,1,Bahcc1-203,3329,Bahcc1-203;Bahcc1-201;Bahcc1-204;Bahcc1-202,Bahcc1;Bahcc1;Bahcc1;Bahcc1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,11,268515,ENSMUSG00000039741,conserved gene and region,11,120236295,120236496,202,*,202,16,0.599009901,1.073754153,0.079207921,6.59E-11,CpGisland,TRUE,U2,Pr-W
22714,cg08931702,-0.00000796,0.00000303,-2.625222774,0.009088572,loss,ns,0.00000682,0.00000515,1.323200775,0.186743731,pos,ns,0.002503352,0.001509096,1.65884209,0.098158979,pos,ns,1.008069968,-0.00013399,0.0000519,-2.581815576,0.010287007,neg,ns,0.943260097,Sox6,Sox6_Intron,7,115805707,115805756,115805755,115805756,50,+,TTGCCGCTATAATACACAAAATCAAGTTCTATTATTCTAAACTATCCTCG,"Intron (Sox6-210/Sox6, intron 2 of 15)",7,115470872,116031047,560176,2,Sox6-210,225291,Sox6-210;Sox6-201;Sox6-202;Sox6-204;Sox6-205;Sox6-203;Sox6-212;Sox6-206;Sox6-209;Sox6-214;Sox6-211;Sox6-208,Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,37,57,20679,ENSMUSG00000051910,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2657,cg21234864,0.00000102,0.00000174,0.585249384,0.558805805,gain,ns,-0.00000392,0.00000296,-1.323191156,0.186746925,neg,ns,-0.000720828,0.000867253,-0.831162437,0.406521589,neg,ns,0.390916386,0.00000398,0.0000298,0.133573546,0.893826473,pos,ns,0.95836268,Vcl,Vcl_Exon,14,21027184,21027233,21027184,21027185,50,+,CGAACCTGAGCTGCTGTTAATGCCATCCAATCAGCCGGTCAACCAGCCCA,"Exon (Vcl-202/Vcl, exon 3 of 3)",14,20929398,21033676,104279,1,Vcl-201,97786,Ap3m1-206;Vcl-201;Vcl-202,Ap3m1;Vcl;Vcl,25217;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,8,22330,ENSMUSG00000021823,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14224,cg24666664,0.000203276,0.0000281,7.221372554,4.00E-12,gain,yes,-0.0000633,0.0000478,-1.323080848,0.186783559,neg,ns,0.002707999,0.014010169,0.193288139,0.846859893,pos,ns,0.072188435,0.000488765,0.000481809,1.014438387,0.311164708,pos,ns,0.621327749,Onecut1,Onecut1_Exon,9,74854925,74854974,74854925,74854926,50,-,CGAGTTTCACGGTATTGATCCACGCAGCTATTCATCTCTGCCATGCAAGA,Promoter (6-7kb),9,74861921,74891781,29861,1,Onecut1-201,-6996,NA,NA,NA,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,16,28,15379,ENSMUSG00000043013,conserved gene but different region,9,74854915,74854990,76,*,76,8,0.513157895,1.6,0.105263158,0.00000148,CpGisland,TRUE,U13,Hc-P
15503,cg14144054,-0.00000368,0.00000224,-1.645786053,0.100821267,loss,ns,0.00000503,0.0000038,1.322983614,0.186815856,pos,ns,0.001034281,0.001114276,0.928208979,0.354021322,pos,ns,0.450970581,-0.0000684,0.0000383,-1.783744658,0.075443289,neg,ns,0.944640201,Slc8a1,Slc8a1_Exon,17,81388830,81388879,81388830,81388831,50,-,CGATACAGCAGCACCCCCACATTGATGAAAGCAAAAATGGTGAAGAGAGT,"Exon (Slc8a1-204/Slc8a1, exon 8 of 8)",17,81373105,81649608,276504,2,Slc8a1-204,260729,Slc8a1-204;Slc8a1-206;Slc8a1-202;Slc8a1-201;Slc8a1-203,Slc8a1;Slc8a1;Slc8a1;Slc8a1;Slc8a1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,3,20541,ENSMUSG00000054640,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2190,cg25361778,-0.000000449,0.00000222,-0.202608196,0.839574191,loss,ns,0.00000498,0.00000376,1.322975329,0.186818608,pos,ns,0.000863794,0.001102926,0.783183817,0.434117085,pos,ns,0.362393122,-0.0000449,0.0000379,-1.184771046,0.237015484,neg,ns,0.926410123,Pou6f2,Pou6f2_Intron,13,18336656,18336705,18336704,18336705,50,-,CATCACAAGAAATGTATGCACTGGAAACTTACAAGCTTGCTCAAGATGCG,"Intron (Pou6f2-201/Pou6f2, intron 2 of 7)",13,18121098,18382041,260944,2,Pou6f2-201,45336,Pou6f2-201;Pou6f2-202;Pou6f2-203,Pou6f2;Pou6f2;Pou6f2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,18,218030,ENSMUSG00000009734,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27618,cg27220635,-0.0000575,0.0000233,-2.465418105,0.014226808,loss,ns,0.0000524,0.0000396,1.322943202,0.18682928,pos,ns,0.020073961,0.01160746,1.729401739,0.084732669,pos,ns,1.071949111,-0.000533754,0.00039918,-1.337126916,0.182161538,neg,ns,0.436787959,Kcnj9,Kcnj9_Exon,1,172326081,172326130,172326081,172326082,50,-,CGAACATGCAGCCCACCATGAAGGCGTTCACCATGGAGCCCAGGATGGCC,"Exon (Kcnj9-201/Kcnj9, exon 3 of 4)",1,172320501,172329318,8818,2,Kcnj9-201,3188,Kcnj9-201;Kcnj9-202;Kcnj9-203,Kcnj9;Kcnj9;Kcnj9,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,6,16524,ENSMUSG00000038026,conserved gene and region,1,172325701,172326106,406,*,406,49,0.642857143,1.182758621,0.120689655,7.23E-42,CpGisland,TRUE,U3,Pr-B
23490,cg23392153,-0.0000339,0.00000697,-4.860284073,0.0000019,loss,ns,0.0000157,0.0000118,1.322748021,0.186894126,pos,ns,-0.009479186,0.003470917,-2.731032584,0.006675117,neg,ns,2.175541111,0.000319815,0.000119365,2.679315381,0.007771199,pos,ns,0.883460733,Gm9267,Gm9267_Intergenic_downstream,12,118647961,118648010,118647961,118647962,50,+,CGTGTGCTTACAGATACCTGTCAAATGTCTGTCATCTTAGCTATCGCTGA,Distal Intergenic,12,118602677,118603080,404,1,Gm9267-201,45284,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,20,668611,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7929,cg02701049,0.0000134,0.0000062,2.154443043,0.031975638,gain,ns,0.0000139,0.0000105,1.322666861,0.186921095,pos,ns,-0.000339067,0.003086897,-0.109840808,0.912606698,neg,ns,0.039716348,0.000182597,0.000106158,1.72005108,0.086421154,pos,ns,0.844642911,Hif1an,Hif1an_Intron,19,44634011,44634060,44634059,44634060,50,-,AGCCTTGAAATGGCCAGCACTTTATCCTGATCGCCTTAGATATTGTTTCG,"Intron (Gm35460-201/Gm35460-201, intron 3 of 6)",19,44562850,44563952,1103,1,Hif1an-202,71210,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,31,319594,ENSMUSG00000036450,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11664,cg00180801,0.0000665,0.00000724,9.189199234,5.88E-18,gain,yes,-0.0000163,0.0000123,-1.322579726,0.186950053,neg,ns,-0.000231836,0.003603931,-0.064328586,0.948750054,neg,ns,0.022848187,0.000116819,0.000123939,0.942553184,0.346643449,pos,ns,0.290531972,Gm18161,Gm18161_Intergenic_downstream,19,59717915,59717964,59717915,59717916,50,-,CGCTTTAATCCGGCGTGTCTGCTGCTGGTTAACAAGGAAATCCTATGTCA,Distal Intergenic,19,59540451,59540978,528,1,Gm18161-201,177513,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,8,100416590,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7270,cg21456069,0.00000292,0.00000451,0.646416088,0.518488196,gain,ns,-0.0000101,0.00000766,-1.322433109,0.186998786,neg,ns,-0.00010954,0.002244641,-0.0488007,0.96110955,neg,ns,0.017227108,-0.0000539,0.0000772,-0.697724023,0.485872779,neg,ns,0.511562704,Gm5267,Gm5267_Intron,1,41919031,41919080,41919031,41919032,50,-,CGAGGCAATCATTTGCCACGTGTGGAAAGCGGATACAGCTGTAAACTATG,"Intron (Gm29260-201/Gm29260-201, intron 4 of 5)",1,42103289,42104333,1045,1,Gm5267-201,-184258,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,15,383634,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11877,cg21020508,0.0000285,0.00000479,5.948189573,7.31E-09,gain,yes,-0.0000108,0.00000813,-1.322341417,0.187029268,neg,ns,0.008379213,0.002382774,3.516578956,0.000502447,pos,ns,3.298910173,-0.000453769,0.0000819,-5.537585717,6.55E-08,neg,yes,0.066719136,Tle3,Tle3_fiveUTR,9,61373445,61373494,61373445,61373446,50,+,CGCAGGGCAGACATCCGGTGAGTAATTGCAACTCGGTTTATTTAAGCATC,Promoter (<=1kb),9,61373482,61401892,28411,1,Tle3-206,0,Tle3-218;Tle3-204;Tle3-201;Tle3-215;Tle3-212;Tle3-208;Tle3-207;Tle3-217;Tle3-202;Tle3-206;Tle3-210;Tle3-205;Tle3-211;Tle3-209;Tle3-213,Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,30,21887,ENSMUSG00000032280,conserved gene but different region,9,61372388,61373461,1074,*,1074,110,0.683426443,0.879489012,0.102420857,1.55E-84,CpGisland,TRUE,NA,NRS
16072,cg07893751,0.0000542,0.00000614,8.816642358,8.67E-17,gain,yes,-0.0000138,0.0000104,-1.32231192,0.187039075,neg,ns,0.0002907,0.00305684,0.095098114,0.924298337,pos,ns,0.034187828,0.000239685,0.000105124,2.280006737,0.023286188,pos,ns,0.832943594,Zfp407,Zfp407_Intron,18,84353424,84353473,84353472,84353473,50,+,GAAACGCCGACGATAAATTACATCTGCACTGGCTTTTCATCTGCTGTTCG,"Intron (Zfp407-201/Zfp407, intron 2 of 2)",18,84128027,84558425,430399,2,Zfp407-201,204952,Zfp407-201;Zfp407-202;Zfp407-203,Zfp407;Zfp407;Zfp407,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,32,240476,ENSMUSG00000048410,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5339,cg04563556,-0.00000442,0.00000238,-1.85425886,0.064651725,loss,ns,0.00000535,0.00000405,1.322217974,0.18707031,pos,ns,-0.001136707,0.001185952,-0.958476625,0.338569391,neg,ns,0.470352307,0.0001099,0.0000408,2.694639473,0.007430635,pos,ns,0.960657164,Zbtb43,Zbtb43_Intergenic_upstream,2,33515938,33515987,33515938,33515939,50,-,CGGCACAATCAGATTTATGGCTCCTGCATCTTATGAAATTACACAGATGT,Distal Intergenic,2,33454888,33468559,13672,2,Zbtb43-204,-47428,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,6,71834,ENSMUSG00000026788,conserved gene and region,2,33515818,33515949,132,*,132,9,0.583333333,0.933962264,0.068181818,0.00000904,CpGisland,TRUE,NA,NRS
12531,cg16316158,5.52E-08,0.00000117,0.047057313,0.962497849,gain,ns,-0.00000264,0.00000199,-1.322162041,0.18708891,neg,ns,-0.0000262,0.000584213,-0.044903658,0.964213012,neg,ns,0.015827012,-0.00000415,0.0000201,-0.206495984,0.836539059,neg,ns,0.970794573,Hmbox1,Hmbox1_Exon,14,64897055,64897104,64897055,64897056,50,-,CGCTGAAGCAGATCTATCTGCTCTATGGTAAATCTGGGTTCATCTGTATA,"Exon (Hmbox1-201/Hmbox1, exon 3 of 11)",14,64811600,64949850,138251,2,Hmbox1-201,52746,Hmbox1-201;Hmbox1-202;Hmbox1-205;Hmbox1-209;Hmbox1-210;Hmbox1-203;Hmbox1-207;Hmbox1-204;Hmbox1-208,Hmbox1;Hmbox1;Hmbox1;Hmbox1;Hmbox1;Hmbox1;Hmbox1;Hmbox1;Hmbox1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,8,219150,ENSMUSG00000021972,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17270,cg06438433,-0.0000207,0.00000544,-3.8020606,0.000172786,loss,ns,0.0000122,0.00000925,1.322136064,0.187097548,pos,ns,-0.002205429,0.002709964,-0.813822129,0.416371513,neg,ns,0.380518991,0.000167507,0.0000932,1.797377118,0.073248893,pos,ns,0.894439324,Zbtb7b,Zbtb7b_Exon,3,89379809,89379858,89379809,89379810,50,-,CGCTGCAGGTGGTCCTCCTTGGCGAAAGCCTTGTGGCACAGGTGGCACTC,"Exon (Zbtb7b-203/Zbtb7b, exon 3 of 3)",3,89377644,89387189,9546,2,Zbtb7b-203,7331,Dcst2-201;Zbtb7b-203;Zbtb7b-204;Zbtb7b-202;Zbtb7b-201;Zbtb7b-206;Zbtb7b-208;Zbtb7b-209;Zbtb7b-205,Dcst2;Zbtb7b;Zbtb7b;Zbtb7b;Zbtb7b;Zbtb7b;Zbtb7b;Zbtb7b;Zbtb7b,17834;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,12,22724,ENSMUSG00000028042,conserved gene and region,3,89379693,89380002,310,*,310,18,0.635483871,0.606785559,0.058064516,6.12E-10,CpGisland,TRUE,NA,NRS
9209,cg06163893,-0.00000493,0.0000029,-1.698101743,0.090492016,loss,ns,0.00000652,0.00000493,1.322006433,0.18714066,pos,ns,0.00315165,0.001445437,2.180412797,0.029978602,pos,ns,1.523188626,-0.000119336,0.0000497,-2.400727219,0.01695158,neg,ns,0.931355985,Cadm1,Cadm1_Intron,9,47550508,47550557,47550556,47550557,50,+,AAGTTCTTAAACGTTCTGAATTGCTTCACCTAATCTTTTTATACTGAACG,"Intron (Cadm1-204/Cadm1, intron 1 of 9)",9,47530173,47853385,323213,1,Cadm1-204,20335,Cadm1-204;Cadm1-209;Cadm1-206;Cadm1-202;Cadm1-203;Cadm1-207;Cadm1-205;Cadm1-211;Cadm1-210;Cadm1-208;Cadm1-201,Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,77,54725,ENSMUSG00000032076,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3381,cg12641085,0.0000819,0.00000834,9.823133959,5.27E-20,gain,yes,-0.0000187,0.0000142,-1.321983435,0.187148309,neg,ns,0.018216197,0.004150134,4.389303166,0.0000156,pos,ns,4.806484311,-0.000473427,0.000142723,-3.317106273,0.001017721,neg,ns,0.067086636,Bcl6,Bcl6_Intron,16,23983266,23983315,23983314,23983315,50,+,ATGGAAGGCACTAACTGTCCTTGGAAAGCGATGAGTCAAACTTGACCGCG,"Intron (Bcl6-201/Bcl6, intron 1 of 9)",16,23965052,23988852,23801,2,Bcl6-201,5537,Bcl6-201,Bcl6,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,18,12053,ENSMUSG00000022508,conserved gene and region,16,23983220,23983527,308,*,308,24,0.590909091,0.899598394,0.077922078,5.93E-16,CpGisland,TRUE,U1,Pr-A
22311,cg24866418,0.000209961,0.0000095,22.10024773,1.19E-65,gain,yes,-0.0000213,0.0000161,-1.321705408,0.187240802,neg,ns,0.016329311,0.004728451,3.453416259,0.000630535,pos,ns,3.200290704,0.0000532,0.000162611,0.327349146,0.743624767,pos,ns,0.252238544,Lhfpl4,Lhfpl4_Exon,6,113193894,113193943,113193942,113193943,50,-,GATGCAGCCGAGGATCAGCACCATGGAGAGCAGCACGAAGAAGGCGGCCG,Promoter (<=1kb),6,113175395,113193943,18549,2,Lhfpl4-202,0,Lhfpl4-201;Lhfpl4-202,Lhfpl4;Lhfpl4,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,7,269788,ENSMUSG00000042873,conserved gene and region,6,113193884,113194365,482,*,482,42,0.668049793,0.8053467,0.08713693,1.49E-29,CpGisland,TRUE,U13,Hc-P
21504,cg24019479,-0.000000329,0.000000984,-0.334167754,0.738478928,loss,ns,0.00000221,0.00000167,1.321695769,0.187244009,pos,ns,0.001679997,0.000489698,3.43067774,0.000683691,pos,ns,3.165139885,-0.0000458,0.0000168,-2.722033726,0.00685518,neg,ns,0.97633325,Bcl11b,Bcl11b_Promoter,12,108011139,108011188,108011139,108011140,50,+,CGGTATAAATAAGTTATGCTGCAGTTGTAAAATGGAAGAAATTTTGTTGT,Promoter (7-8kb),12,107910403,108003602,93200,2,Bcl11b-201,-7537,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,8,39,58208,ENSMUSG00000048251,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22888,cg14556531,-0.00000182,0.00000183,-0.991161006,0.322379969,loss,ns,-0.00000411,0.00000311,-1.321618933,0.187269576,neg,ns,-0.00232434,0.000911506,-2.549999987,0.0112532,neg,ns,1.948723972,0.0000332,0.0000313,1.060262983,0.289850343,pos,ns,0.039531372,Meis2,Meis2_fiveUTR,2,116065236,116065285,116065236,116065237,50,-,CGTGTTTCATGGCTTTTTGCCACTCCAGCTGTCAATCAAAGCCCGGAATG,Promoter (<=1kb),2,115863064,116065839,202776,2,Meis2-205,554,Meis2-201;Meis2-203;Meis2-205;Meis2-206;Meis2-204;Meis2-202;Meis2-213;Meis2-210;Meis2-209,Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2,0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,11,97,17536,ENSMUSG00000027210,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10839,cg24604865,0.000111028,0.000022,5.047952456,0.000000763,gain,yes,-0.0000494,0.0000374,-1.321551874,0.187291893,neg,ns,0.021528425,0.010946965,1.966611217,0.050119852,pos,ns,1.299990222,-0.000673574,0.000376465,-1.789205767,0.074557834,neg,ns,0.304516036,Scaper,Scaper_Intron,9,55582032,55582081,55582032,55582033,50,+,CGTCCAGCATGCTGTGACCCAGTGCCCTCTGTTTAACCTTCACTGATAAG,"Intron (Scaper-202/Scaper, intron 29 of 32)",9,55549879,55938101,388223,2,Scaper-202,356020,Scaper-202;Scaper-201;Scaper-204;Scaper-205,Scaper;Scaper;Scaper;Scaper,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,3,244891,ENSMUSG00000034007,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
572,cg21644546,0.0000585,0.00000922,6.342752059,7.98E-10,gain,yes,-0.0000207,0.0000157,-1.321517842,0.187303219,neg,ns,0.006850785,0.004587688,1.493297838,0.136376308,pos,ns,0.86526107,-0.00048656,0.00015777,-3.083981122,0.002226332,neg,ns,0.63512488,Esrra,Esrra_threeUTR,19,6911115,6911164,6911115,6911116,50,+,CGCCTCCCTGGCCAAACCCAAAAATAAATATAGTGTTATTGCTCTGCAGG,3' UTR,19,6910977,6921051,10075,2,Esrra-203,9887,Esrra-203;Esrra-206;Esrra-201;Esrra-205;Esrra-204;Prdx5-202;Prdx5-205;Prdx5-201;Prdx5-203;Prdx5-204;Trmt112-201;Trmt112-202;Trmt112-203;Trmt112-204,Esrra;Esrra;Esrra;Esrra;Esrra;Prdx5;Prdx5;Prdx5;Prdx5;Prdx5;Trmt112;Trmt112;Trmt112;Trmt112,0;0;0;0;0;-1137;-1585;-1009;-2814;-1498;1417;1368;962;951,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,4,26379,ENSMUSG00000024955,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U4,Pr-F
4563,cg22489511,0.000002,0.00000206,0.972139782,0.331738926,gain,ns,-0.00000462,0.0000035,-1.321474256,0.187317726,neg,ns,-0.000289121,0.001025339,-0.281975784,0.778150229,neg,ns,0.10893655,0.0000334,0.0000353,0.948517021,0.34360514,pos,ns,0.952016468,9930021J03Rik,9930021J03Rik_Exon,19,29786294,29786343,29786342,29786343,50,-,TGAACCATTATAGATTCAAAAACTCCACTTGTCAAGCCTGCCAAACTTCG,"Exon (9930021J03Rik-201/9930021J03Rik, exon 2 of 8)",19,29714402,29805507,91106,2,9930021J03Rik-201,19164,9930021J03Rik-201;9930021J03Rik-204,9930021J03Rik;9930021J03Rik,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,240613,ENSMUSG00000046138,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5973,cg02050788,-0.00000266,0.00000458,-0.57977958,0.562484391,loss,ns,0.0000103,0.00000778,1.321472487,0.187318315,pos,ns,0.000344039,0.002280633,0.1508526,0.880190105,pos,ns,0.055423518,-0.000089,0.0000784,-1.134627667,0.257407923,neg,ns,0.945879562,Slit3,Slit3_Intron,11,35619500,35619549,35619548,35619549,50,-,TTAGTCCATCGAATCTAATTGCAAAATCATTTCATTAAAATGGGTCAGCG,"Intron (Slit3-201/Slit3, intron 14 of 35)",11,35121224,35708507,587284,1,Slit3-201,498276,Slit3-201,Slit3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,21,20564,ENSMUSG00000056427,conserved gene and region,11,35619509,35619710,202,*,202,11,0.485148515,0.926992073,0.054455446,0.00000509,CpGisland,TRUE,U15,NS
24158,cg06027043,0.0000348,0.00000606,5.744221373,2.21E-08,gain,yes,0.0000136,0.0000103,1.321267069,0.187386695,pos,ns,-0.000195901,0.003016724,-0.064938217,0.948265048,neg,ns,0.023070257,0.000358876,0.000103745,3.459220576,0.000617599,pos,ns,0.224894488,Gm6905,Gm6905_Intergenic_downstream,7,123031276,123031325,123031324,123031325,50,+,TGTGATGGCTCCGGTGATGTTGGAGGCGGCATGTGACTCCCAGGGCTACG,Distal Intergenic,7,123010112,123010622,511,1,Gm6905-201,21164,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,3,628696,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
13755,cg18681528,-0.00000123,0.0000017,-0.721338986,0.471244646,loss,ns,0.00000382,0.00000289,1.320995274,0.187477199,pos,ns,0.002060744,0.00084691,2.433250141,0.015528983,pos,ns,1.80885699,-0.0000977,0.0000291,-3.355681106,0.000890166,neg,ns,0.963072621,Gm11235,Gm11235_Intergenic_upstream,4,72382259,72382308,72382259,72382260,50,+,CGGGATGGTTTAACACTATTTTCCAAATCAGCATGCATGCATAAAATGAC,Distal Intergenic,4,72542666,72542998,333,1,Gm11235-201,-160358,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,8,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7797,cg08458004,0.00000328,0.00000311,1.054653686,0.292405016,gain,ns,-0.00000698,0.00000529,-1.320976472,0.187483461,neg,ns,-0.003343693,0.001548986,-2.158633288,0.031645862,neg,ns,1.499683074,-0.0000134,0.0000533,-0.252054758,0.801165765,neg,ns,0.916986632,Arhgap15,Arhgap15_Intron,2,44341425,44341474,44341473,44341474,50,-,TGTGAAATGTTTGTTCCCTGTGACGGCTAGAACAGGGCCAGCTCTGGACG,"Intron (Arhgap15-203/Arhgap15, intron 13 of 14)",2,43748824,44395953,647130,1,Arhgap15-203,592601,Arhgap15-203;Arhgap15-202;Arhgap15-201,Arhgap15;Arhgap15;Arhgap15,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,72,78,76117,ENSMUSG00000049744,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3680,cg26112292,-0.0000124,0.0000105,-1.177716224,0.239813096,loss,ns,0.0000236,0.0000179,1.320962356,0.187488162,pos,ns,0.001606401,0.005230496,0.307122217,0.758956555,pos,ns,0.119783084,-0.000409947,0.000179876,-2.279047468,0.023343855,neg,ns,0.895818333,Gm12067,Gm12067_Intergenic_upstream,11,24983265,24983314,24983265,24983266,50,+,CGAATGAATGCGACCATATGAGCTATATTGGAGCCGTATGCATCCTATTT,Distal Intergenic,11,24552438,24553962,1525,2,Gm12067-201,-429303,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,26,58,100417843,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27114,cg08123116,-0.0000328,0.00000825,-3.971123166,0.000089,loss,ns,-0.0000185,0.000014,-1.320651647,0.187591669,neg,ns,0.004201833,0.004106245,1.023278745,0.306973919,pos,ns,0.512898521,-0.000353361,0.000141213,-2.502316597,0.012853116,neg,ns,0.682268044,Astn1,Astn1_Exon,1,158511001,158511050,158511049,158511050,50,-,CTGGCTGAACCCTGCCCAAGTGGTTCTCTTCTCTCAGCAGAACTCCAGCG,"Exon (Astn1-205/Astn1, exon 7 of 23)",1,158362273,158691779,329507,1,Astn1-205,148728,Astn1-205;Astn1-201;Astn1-202;Astn1-209;Astn1-211;Astn1-203,Astn1;Astn1;Astn1;Astn1;Astn1;Astn1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,3,11899,ENSMUSG00000026587,conserved gene and region,1,158511049,158511240,192,*,192,11,0.588541667,0.667931689,0.057291667,0.00000315,CpGisland,TRUE,U15,NS
24545,cg27419869,-0.00000638,0.00000335,-1.904278741,0.057799475,loss,ns,-0.00000751,0.00000569,-1.320459362,0.187655746,neg,ns,-0.000739805,0.001666635,-0.443891366,0.657430805,neg,ns,0.18214995,-0.000139848,0.0000573,-2.43997358,0.015248416,neg,ns,0.874145794,Taok2,Taok2_Exon,7,126872252,126872301,126872300,126872301,50,-,GCAGCCAGCTCCTTCTTCTGCTGCCCAAGGATGTGCTGCTGGAACTTCCG,"Exon (Taok2-201/Taok2, exon 14 of 19)",7,126865678,126884703,19026,2,Taok2-201,12402,Taok2-205;Taok2-201;Taok2-203;Taok2-202,Taok2;Taok2;Taok2;Taok2,0;0;-4996;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,11,381921,ENSMUSG00000059981,conserved gene and region,7,126872300,126872556,257,*,257,16,0.653696498,0.614189694,0.062256809,2.45E-09,CpGisland,TRUE,U10,Tr-S
15867,cg15503346,0.000107616,0.00000868,12.39826324,6.09E-29,gain,yes,-0.0000195,0.0000147,-1.320448497,0.187659367,neg,ns,0.013503812,0.004320078,3.125826276,0.001941005,pos,ns,2.711973428,-0.00018506,0.000148567,-1.245630963,0.213840541,neg,ns,0.295041889,Gm6411,Gm6411_Intron,13,83732275,83732324,83732275,83732276,50,-,CGTAGTGTGGGGACTGAAAAAGACCGTGGCAATGGATGAACAATAGGGCT,"Intron (C130071C03Rik-201/C130071C03Rik-201, intron 1 of 3)",13,83761132,83762335,1204,2,Gm6411-201,30060,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,36,623241,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
16054,cg17681297,-0.0000174,0.00000465,-3.74050911,0.000218735,loss,ns,0.0000104,0.00000791,1.320447168,0.18765981,pos,ns,-0.001524809,0.002316521,-0.658232184,0.510877473,neg,ns,0.291683247,0.000082,0.0000797,1.029740364,0.303934647,pos,ns,0.906469878,Bnc2,Bnc2_Intron,4,84307140,84307189,84307140,84307141,50,+,CGGTAGTCATTTGGAGAGCTGCAAACGTGCCATTAGAAGCACTTTTACAA,"Intron (Bnc2-201/Bnc2, intron 6 of 7)",4,84275095,84675034,399940,2,Bnc2-201,367845,Bnc2-201;Bnc2-202;Bnc2-214;Bnc2-215;Bnc2-206;Bnc2-211;Bnc2-205;Bnc2-217;Bnc2-207;Bnc2-212,Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,91,242509,ENSMUSG00000028487,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8691,cg19059539,-0.00000298,0.00000276,-1.082243928,0.279985264,loss,ns,0.00000618,0.00000468,1.320431617,0.187664993,pos,ns,0.001996005,0.001371658,1.45517751,0.146631982,pos,ns,0.833771296,-0.0000864,0.0000472,-1.831774502,0.067944416,neg,ns,0.93420838,Atxn1,Atxn1_threeUTR,13,45549935,45549984,45549983,45549984,50,-,TAAAATTCAATAAACAGACTCGAGTGTATCCTACAAATAGACACACCACG,3' UTR,13,45549755,45964976,415222,2,Atxn1-201,414992,Atxn1-201;Gmpr-201;Gmpr-202;Gmpr-204,Atxn1;Gmpr;Gmpr;Gmpr,0;42491;36095;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,10,20238,ENSMUSG00000046876,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20858,cg04779946,0.000032,0.0000136,2.355502195,0.01912037,gain,ns,-0.0000305,0.0000231,-1.320119878,0.187768915,neg,ns,0.00054643,0.006762293,0.080805479,0.935648793,pos,ns,0.028887138,-0.000218502,0.000232555,-0.939572184,0.348168559,neg,ns,0.676947243,Pik3r4,Pik3r4_Exon,9,105667882,105667931,105667930,105667931,50,+,GGGAGACAAGTTGATCTTGTTAAAACCAAACAAGAACCAGATGACAAACG,"Exon (Pik3r4-204/Pik3r4, exon 10 of 15)",9,105642978,105679320,36343,1,Pik3r4-204,24904,Pik3r4-204;Pik3r4-203;Pik3r4-210;Pik3r4-201;Pik3r4-202;Pik3r4-205,Pik3r4;Pik3r4;Pik3r4;Pik3r4;Pik3r4;Pik3r4,0;24867;0;0;0;6719,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,75669,ENSMUSG00000032571,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12735,cg00444649,0.00000951,0.00000268,3.54449576,0.000453988,gain,ns,-0.00000602,0.00000456,-1.320042843,0.187794602,neg,ns,0.000761655,0.001335321,0.570390861,0.568825807,pos,ns,0.245020708,-0.0000844,0.0000459,-1.838405259,0.066959278,neg,ns,0.888662835,Rsrc1,Rsrc1_Intron,3,67010198,67010247,67010198,67010199,50,+,CGGCTGATAAATCAAAAGTGGATTGAGTGGACAGGAGGCAGTGATTGATA,"Intron (Rsrc1-206/Rsrc1, intron 3 of 9)",3,66981390,67356559,375170,1,Rsrc1-206,28808,Rsrc1-206;Rsrc1-203;Rsrc1-208;Rsrc1-202;Rsrc1-201;Rsrc1-209;Rsrc1-205,Rsrc1;Rsrc1;Rsrc1;Rsrc1;Rsrc1;Rsrc1;Rsrc1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,37,66880,ENSMUSG00000034544,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27321,cg15298164,0.0000278,0.00000454,6.122330143,2.79E-09,gain,yes,-0.0000102,0.00000771,-1.319933265,0.187831145,neg,ns,0.005795247,0.002259086,2.565306813,0.01077868,pos,ns,1.96743444,-0.000236319,0.0000777,-3.041825856,0.002552394,neg,ns,0.042592597,Slc12a5,Slc12a5_Intron,2,164967902,164967951,164967902,164967903,50,+,CGCGACCTAGTTCCCTGCCGTTATTTTTAGGGCGCGGGATGGCACCTGCC,"Intron (Slc12a5-202/Slc12a5, intron 1 of 3)",2,164960816,164974543,13728,1,Slc12a5-202,7086,Slc12a5-202;Slc12a5-209;Slc12a5-207;Slc12a5-201;Slc12a5-208;Slc12a5-210;Slc12a5-206,Slc12a5;Slc12a5;Slc12a5;Slc12a5;Slc12a5;Slc12a5;Slc12a5,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,9,57138,ENSMUSG00000017740,conserved gene and region,2,164967855,164968493,639,*,639,68,0.719874804,0.821958232,0.106416275,9.46E-54,CpGisland,TRUE,U13,Hc-P
19533,cg06829904,0.00000121,0.00000256,0.471266222,0.637782108,gain,ns,0.00000575,0.00000435,1.319746902,0.187893307,pos,ns,0.001201312,0.001275422,0.941894224,0.346980211,pos,ns,0.459695293,-0.0000129,0.0000439,-0.294626883,0.768476123,neg,ns,0.956749852,Pja1,Pja1_Intergenic_upstream,X,99578765,99578814,99578765,99578766,50,+,CGTTAGTGCTTAAAGTGCAGTTACACTCTGAAAATTGACCATAAAATGAC,Distal Intergenic,20,99465734,99471273,5540,2,Pja1-203,-107492,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,17,18744,ENSMUSG00000034403,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24029,cg04434607,0.0000698,0.0000193,3.609853565,0.000357134,gain,ns,-0.0000434,0.0000328,-1.319696872,0.187909998,neg,ns,0.012991321,0.009623753,1.349922619,0.178025649,pos,ns,0.749517422,-0.000556525,0.00033096,-1.681547667,0.093663669,neg,ns,0.427108046,Cux2,Cux2_Intron,5,122017147,122017196,122017195,122017196,50,-,TCAACAGAATAGGATTCTTTCATACGTTATCAAGAGAGCTGCTGACATCG,"Intron (Cux2-202/Cux2, intron 2 of 22)",5,121856366,122049851,193486,2,Cux2-202,32655,Cux2-202;Cux2-201;Cux2-207;Cux2-203,Cux2;Cux2;Cux2;Cux2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,21,13048,ENSMUSG00000042589,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
8333,cg27406900,-0.00000332,0.00000638,-0.519934386,0.603480382,loss,ns,-0.0000143,0.0000108,-1.319685327,0.187913849,neg,ns,0.007419466,0.003175959,2.336133628,0.0201214,pos,ns,1.696341814,-0.000197897,0.000109221,-1.811891199,0.070970529,neg,ns,0.839976942,Zeb2,Zeb2_Intron,2,45024585,45024634,45024633,45024634,50,+,AAAGATTACACCGTGCATATCTGCTCATAATATGATCTTTGTATAATCCG,"Intron (Zeb2-212/Zeb2, intron 3 of 10)",2,44983632,45117395,133764,2,Zeb2-212,92761,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-227;Zeb2-216;Zeb2-229;Zeb2-218;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17822,cg19150874,0.0000234,0.0000117,1.994698508,0.046951102,gain,ns,0.0000263,0.0000199,1.319667356,0.187919845,pos,ns,0.01350051,0.005843239,2.310449861,0.021519526,pos,ns,1.667167303,-0.000530388,0.000200948,-2.639421496,0.008724665,neg,ns,0.453130906,Irx3,Irx3_Exon,8,91872614,91872663,91872614,91872615,50,-,CGGACAGATGTGTTCTATACACTTGTTTAAACACGGCGCTCATTAGGAGG,"Exon (Gm28511-201/Gm28511-201, exon 2 of 2)",8,91798525,91802067,3543,2,Irx3-202,-70596,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,16,36,16373,ENSMUSG00000031734,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1271,cg09337540,0.000134226,0.00000812,16.53606113,1.78E-44,gain,yes,-0.0000182,0.0000138,-1.319588098,0.187946289,neg,ns,0.009924222,0.004040005,2.456487695,0.01457824,pos,ns,1.836294904,-0.0000754,0.000138935,-0.542752495,0.587690217,neg,ns,0.558138302,Bcor,Bcor_Intron,X,12152686,12152735,12152686,12152687,50,-,CGTTGTCAGCTGAACATAATGCAAATTATTTATGGGCTGTCTGCGCAATA,"Intron (Bcor-201/Bcor, intron 1 of 13)",20,12036743,12160355,123613,2,Bcor-201,7620,Bcor-201;Bcor-208,Bcor;Bcor,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,56,74,71458,ENSMUSG00000040363,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24575,cg16518772,-0.00000151,0.00000192,-0.787199144,0.43176672,loss,ns,0.00000431,0.00000327,1.319577348,0.187949876,pos,ns,0.000386555,0.000957709,0.403625243,0.686766591,pos,ns,0.16319084,-0.0000019,0.0000329,-0.0575857,0.95411574,neg,ns,0.046867624,Maz,Maz_Exon,7,127025323,127025372,127025371,127025372,50,-,AGTGGGAGCAGTTGTAGGGCTTGTGCACAGCGCCGTCATGTGAGCGCACG,"Exon (Maz-203/Maz, exon 2 of 6)",7,127022130,127026526,4397,2,Maz-203,1154,Gm42742-201;Gm42742-203;Gm42742-204;Gm42742-202;Kif22-202;Kif22-201;Kif22-205;Kif22-206;Maz-203;Maz-201;Maz-204;Maz-202;Maz-206;Maz-205;Prrt2-201;Prrt2-202;Prrt2-205;Prrt2-206;Prrt2-207,Gm42742;Gm42742;Gm42742;Gm42742;Kif22;Kif22;Kif22;Kif22;Maz;Maz;Maz;Maz;Maz;Maz;Prrt2;Prrt2;Prrt2;Prrt2;Prrt2,0;0;0;0;3585;17099;2744;7332;0;0;0;0;0;0;0;0;-4367;-4186;-4968,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,16,17,17188,ENSMUSG00000030678,conserved gene and region,7,127025353,127025621,269,*,269,30,0.669144981,1.002359955,0.111524164,1.16E-24,CpGisland,TRUE,NA,NRS
20634,cg09691053,0.00000848,0.00000425,1.99513606,0.04690311,gain,ns,-0.00000953,0.00000722,-1.319419284,0.188002623,neg,ns,0.004617066,0.002115108,2.182898294,0.029793244,pos,ns,1.525882202,-0.000106291,0.0000727,-1.461272483,0.144953533,neg,ns,0.133832621,D430041D05Rik,D430041D05Rik_Exon,2,104208155,104208204,104208203,104208204,50,+,GCTGGGCTTCCCTGATTCGTTGCTGATGACAGAGCCATTCTCACTGGGCG,"Exon (D430041D05Rik-201/D430041D05Rik, exon 13 of 21)",2,104143073,104410334,267262,2,D430041D05Rik-201,202130,D430041D05Rik-201;D430041D05Rik-202;D430041D05Rik-203;D430041D05Rik-207;D430041D05Rik-206;D430041D05Rik-204,D430041D05Rik;D430041D05Rik;D430041D05Rik;D430041D05Rik;D430041D05Rik;D430041D05Rik,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,241589,ENSMUSG00000068373,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6368,cg02653214,0.0000024,0.00000519,0.461617635,0.644679298,gain,ns,0.0000116,0.00000882,1.319248195,0.188059728,pos,ns,0.007496457,0.002585108,2.899862314,0.003999978,pos,ns,2.397942449,-0.000235091,0.0000889,-2.644391502,0.008600412,neg,ns,0.914906534,Cpeb3,Cpeb3_threeUTR,19,37023650,37023699,37023698,37023699,50,-,TAATCACTTTACTATATAAAATAAATTTCACAATATATAACAGAGCACCG,3' UTR,19,37021291,37207462,186172,2,Cpeb3-201,183763,Cpeb3-201;Cpeb3-203;Cpeb3-212;Cpeb3-210;Cpeb3-204;Cpeb3-208;Cpeb3-202,Cpeb3;Cpeb3;Cpeb3;Cpeb3;Cpeb3;Cpeb3;Cpeb3,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,9,208922,ENSMUSG00000039652,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19712,cg17589528,-0.0000227,0.00000715,-3.179950717,0.001621947,loss,ns,0.000016,0.0000121,1.318952438,0.188158475,pos,ns,-0.003523363,0.003559118,-0.989953854,0.322968726,neg,ns,0.49083953,-0.000111874,0.000122398,-0.914016411,0.361418569,neg,ns,0.790668899,Dlg3,Dlg3_Exon,X,100811482,100811531,100811530,100811531,50,+,TCTTTCTTGTTGGCTTGCAGAGGGAGTGACATCCAACACCAGTGACAGCG,"Exon (Dlg3-202/Dlg3, exon 15 of 21)",20,100767722,100818406,50685,1,Dlg3-201,43760,Dlg3-201;Dlg3-204;Dlg3-202;Dlg3-206;Dlg3-203;Dlg3-208;Dlg3-207;Dlg3-205,Dlg3;Dlg3;Dlg3;Dlg3;Dlg3;Dlg3;Dlg3;Dlg3,0;0;0;0;0;0;14905;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,11,53310,ENSMUSG00000000881,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27502,cg05257947,0.0000485,0.0000105,4.61779932,0.00000569,gain,ns,0.0000235,0.0000178,1.318905146,0.188174268,pos,ns,0.016760714,0.005225517,3.207474706,0.001478995,pos,ns,2.830033208,-0.000450417,0.000179705,-2.50642484,0.012707714,neg,ns,0.594290561,Msl3,Msl3_fiveUTR,X,168673769,168673818,168673817,168673818,50,-,CGAAGCACAGCACTTTCTCCCCTGAGTGGAATTTAAATTTCATGCCCTCG,Promoter (<=1kb),20,168654117,168673898,19782,2,Msl3-201,80,Msl3-201;Msl3-202;Msl3-203,Msl3;Msl3;Msl3,0;0;-1250,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,2,17692,ENSMUSG00000031358,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
11195,cg23623785,-0.00000626,0.00000227,-2.761982781,0.006087972,loss,ns,0.00000508,0.00000385,1.318885214,0.188180925,pos,ns,0.003392051,0.00112762,3.008151089,0.002843788,pos,ns,2.546102708,-0.000162109,0.0000388,-4.180355963,0.0000379,neg,ns,0.945853493,Zmym2,Zmym2_Exon,14,56959842,56959891,56959842,56959843,50,-,CGGGTTCTTCTAGTAAAAGATATTTATGATAAAGACAATTATGAACTGGA,"Exon (Zmym2-201/Zmym2, exon 24 of 24)",14,56887819,56962701,74883,1,Zmym2-201,72023,Zmym2-201;Zmym2-204;Zmym2-203;Zmym2-207,Zmym2;Zmym2;Zmym2;Zmym2,0;0;10313;10288,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,76007,ENSMUSG00000021945,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16779,cg21355833,-0.00000485,0.00000163,-2.974371839,0.003166469,loss,ns,0.00000365,0.00000277,1.318861221,0.188188938,pos,ns,0.002185083,0.000810867,2.694750321,0.007428222,pos,ns,2.129115142,-0.0000329,0.0000279,-1.178777444,0.239390778,neg,ns,0.052494509,Pcbp1,Pcbp1_Exon,6,86525370,86525419,86525370,86525371,50,+,CGGAATGGTCATGACTCTCCCTTGCGGAGACTGGGAGAGCGTCTCCAGCA,Promoter (<=1kb),6,86524492,86526321,1830,2,Pcbp1-201,902,Pcbp1-201,Pcbp1,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,14,15,23983,ENSMUSG00000051695,mapped to different genes,6,86525220,86525644,425,*,425,38,0.665882353,0.811965812,0.089411765,3.12E-27,CpGisland,TRUE,U1,Pr-A
5657,cg16969589,-0.000000697,0.00000234,-0.297976154,0.76592097,loss,ns,0.00000524,0.00000397,1.318822489,0.188201875,pos,ns,0.003539227,0.001163833,3.041010709,0.002559111,pos,ns,2.591910838,-0.000101481,0.00004,-2.535498247,0.011719867,neg,ns,0.959734535,Kalrn,Kalrn_fiveUTR,16,34513937,34513986,34513937,34513938,50,-,CGGAGATACCAGAGATACCACTGGTCCCAGAAGCGGTCCGTCATCCCACC,Promoter (<=1kb),16,34153467,34513944,360478,2,Kalrn-218,0,Kalrn-208;Kalrn-207;Kalrn-202;Kalrn-218;Kalrn-215,Kalrn;Kalrn;Kalrn;Kalrn;Kalrn,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,22,545156,ENSMUSG00000061751,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8866,cg16747362,-0.00000479,0.00000262,-1.832455649,0.067842668,loss,ns,0.00000586,0.00000444,1.318805342,0.188207602,pos,ns,0.001849507,0.001302057,1.420450583,0.156481522,pos,ns,0.80553694,-0.0000606,0.0000448,-1.352660877,0.177149771,neg,ns,0.946292689,Gtpbp2,Gtpbp2_threeUTR,17,46165091,46165140,46165091,46165092,50,+,CGGCTCAACCTTTTCCGCCACCTGCATGAGATTCAGTCTGGCCGAACCTC,3' UTR,17,46161032,46169368,8337,1,Gtpbp2-211,4059,Gtpbp2-211;Gtpbp2-201;Gtpbp2-203;Gtpbp2-217;Gtpbp2-206;Gtpbp2-204;Gtpbp2-216;Gtpbp2-209;Gtpbp2-215;Gtpbp2-214;Gtpbp2-212;Gtpbp2-202;Gtpbp2-205;Gtpbp2-213;Gtpbp2-210;Gtpbp2-208;Gtpbp2-207,Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2,0;0;4042;0;3980;3930;3796;2058;0;0;0;0;0;-1727;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,7,7,56055,ENSMUSG00000023952,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8955,cg13857299,-0.00000719,0.00000482,-1.492369438,0.136619292,loss,ns,-0.0000108,0.00000818,-1.318740623,0.188229219,neg,ns,-0.001963878,0.002397905,-0.818997162,0.413417191,neg,ns,0.383611468,0.0000251,0.0000825,0.304032123,0.761307391,pos,ns,0.916630237,Rbm24,Rbm24_Intron,13,46426861,46426910,46426909,46426910,50,+,GTTTTACTTTGGCCTTATAAAGACATTTTACCCGCTGGAAACCCTTGTCG,"Intron (Rbm24-201/Rbm24, intron 3 of 3)",13,46418434,46431095,12662,1,Rbm24-201,8427,Rbm24-201;Rbm24-203;Rbm24-204;Rbm24-202;Rbm24-205,Rbm24;Rbm24;Rbm24;Rbm24;Rbm24,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,666794,ENSMUSG00000038132,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19724,cg04289242,0.0000137,0.0000145,0.943921834,0.345944668,gain,ns,-0.0000325,0.0000247,-1.318665033,0.188254471,neg,ns,0.001588839,0.00722197,0.220000768,0.82601536,pos,ns,0.083011877,-0.0000345,0.000248363,-0.138884654,0.889631477,neg,ns,0.617978009,Scn8a,Scn8a_Exon,15,100936334,100936383,100936334,100936335,50,+,CGGCTGCTTGCACCACCAGGCCCTGATAGTTTCAAGCCTTTCACCCCTGA,"Exon (Scn8a-212/Scn8a, exon 2 of 15)",15,100870645,101011064,140420,1,Scn8a-212,65689,Scn8a-211;Scn8a-218;Scn8a-212;Scn8a-206;Scn8a-201;Scn8a-204;Scn8a-213;Scn8a-203;Scn8a-214;Scn8a-202;Scn8a-205;Scn8a-207;Scn8a-208,Scn8a;Scn8a;Scn8a;Scn8a;Scn8a;Scn8a;Scn8a;Scn8a;Scn8a;Scn8a;Scn8a;Scn8a;Scn8a,66476;66476;0;65673;0;0;0;0;64914;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,18,24,20273,ENSMUSG00000023033,conserved gene and region,15,100936149,100936466,318,*,318,23,0.594339623,0.820139045,0.072327044,1.38E-14,CpGisland,TRUE,NA,NRS
5524,cg05592909,0.00000329,0.00000355,0.926912571,0.354693001,gain,ns,-0.00000795,0.00000603,-1.31861251,0.188272017,neg,ns,-0.003031682,0.001767337,-1.715395843,0.087271893,neg,ns,1.059125604,0.0000914,0.0000608,1.503685835,0.133680339,pos,ns,0.932475105,Slc22a23,Slc22a23_threeUTR,13,34179677,34179726,34179725,34179726,50,-,CATACAAATTTTCCCCAAAGGTACAACAGATGCGACACCATGCAGACACG,3' UTR,13,34179158,34344451,165294,2,Slc22a23-205,164725,Psmg4-201;Psmg4-202;Slc22a23-205;Slc22a23-201;Slc22a23-202,Psmg4;Psmg4;Slc22a23;Slc22a23;Slc22a23,16713;16713;0;0;13805,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,2,73102,ENSMUSG00000038267,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19230,cg20474133,-0.00000911,0.00000507,-1.794981023,0.073630743,loss,ns,-0.0000114,0.00000862,-1.318323793,0.188368494,neg,ns,0.001910624,0.002524829,0.75673418,0.44978386,pos,ns,0.346996133,0.00000788,0.0000868,0.090728623,0.927766821,pos,ns,0.768497336,Msl1,Msl1_threeUTR,11,98800734,98800783,98800734,98800735,50,+,CGACTGTTCCTGCAATTGATATTGTGTGAAATCTGGGAGGGTGGTCTTTG,3' UTR,11,98795516,98807859,12344,1,Msl1-201,5218,Casc3-201;Msl1-201;Msl1-203;Msl1-204;Msl1-202;Msl1-205;Msl1-206,Casc3;Msl1;Msl1;Msl1;Msl1;Msl1;Msl1,-4122;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,13,74026,ENSMUSG00000052915,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24543,cg05047982,-0.000001,0.00000283,-0.35317573,0.724196739,loss,ns,0.00000634,0.00000481,1.318256918,0.188390846,pos,ns,0.002120815,0.001409565,1.504588618,0.133448012,pos,ns,0.87468789,-0.0000931,0.0000485,-1.920306678,0.05573646,neg,ns,0.947538814,Taok2,Taok2_Exon,7,126871387,126871436,126871435,126871436,50,-,CTGGCCTGCACGTACTTTGAGGCTCTTGGGCTGCTGGCGAACCTGGGCCG,Promoter (<=1kb),7,126865678,126871641,5964,2,Taok2-205,205,Taok2-205;Taok2-201;Taok2-203;Taok2-202,Taok2;Taok2;Taok2;Taok2,0;0;-4131;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,11,381921,ENSMUSG00000059981,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14914,cg20156358,-0.00000504,0.0000041,-1.229315949,0.219885621,loss,ns,-0.00000918,0.00000697,-1.318179483,0.18841673,neg,ns,0.004457976,0.002040756,2.18447266,0.029676348,pos,ns,1.527589547,-0.000223833,0.0000702,-3.18934612,0.001571773,neg,ns,0.798174057,Fam222b,Fam222b_Exon,11,78154442,78154491,78154490,78154491,50,+,CCAGACGAGGGCAGGCATCAGCACTACCTCAGTGTGTGAGGGCCAGATCG,"Exon (Fam222b-201/Fam222b, exon 3 of 3)",11,78094660,78156700,62041,1,Fam222b-201,59782,Fam222b-201;Fam222b-202;Fam222b-203;Traf4-203;Traf4-201,Fam222b;Fam222b;Fam222b;Traf4;Traf4,0;0;0;11098;11098,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,21,216971,ENSMUSG00000037750,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11517,cg17878131,-0.00000522,0.000011,-0.473197047,0.63640563,loss,ns,0.0000247,0.0000187,1.318175335,0.188418117,pos,ns,0.009609294,0.005492862,1.749414835,0.081208903,pos,ns,1.090396354,-0.0000655,0.000188899,-0.346841121,0.728946007,neg,ns,0.805444879,Ecpas,Ecpas_Exon,4,58885438,58885487,58885486,58885487,50,+,TTCTGTAATTGTTCATCTGTTTCAGCATGGCCAAGTCGTAAAAAGACCCG,"Exon (Ecpas-202/Ecpas, exon 2 of 49)",4,58798911,58912749,113839,2,Ecpas-202,27262,Ecpas-202;Ecpas-209;Ecpas-203;Ecpas-208;Ecpas-201;Ecpas-205,Ecpas;Ecpas;Ecpas;Ecpas;Ecpas;Ecpas,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,230249,ENSMUSG00000050812,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22145,cg04942919,-0.0000279,0.00000816,-3.419831242,0.000710496,loss,ns,0.0000183,0.0000139,1.318046909,0.188461051,pos,ns,-0.001725094,0.004062606,-0.424627447,0.671402835,neg,ns,0.173016829,-0.000135051,0.000139713,-0.96663134,0.334481857,neg,ns,0.093465785,Mn1,Mn1_Promoter,5,111417235,111417284,111417283,111417284,50,-,AATGGCTGAAATTGATTGCTGAAATGCAAAACTTGTTGCTGCTTCTCCCG,Promoter (<=1kb),5,111417362,111418073,712,1,Mn1-202,-127,Mn1-202;Mn1-201,Mn1;Mn1,-78;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,5,12,433938,ENSMUSG00000070576,conserved gene but different region,5,111417259,111417781,523,*,523,86,0.757170172,1.150832843,0.164435947,6.07E-87,CpGisland,TRUE,U3,Pr-B
17470,cg14821338,-0.00000019,0.0000021,-0.09040129,0.928026713,loss,ns,0.00000471,0.00000358,1.31793657,0.188497945,pos,ns,0.002112409,0.001047512,2.016597216,0.044599565,pos,ns,1.350669376,-0.0000781,0.000036,-2.168449755,0.030884752,neg,ns,0.949162608,Gm12635,Gm12635_Intergenic_upstream,4,90437805,90437854,90437853,90437854,50,-,TGCTTGTTCAGGCAGCTCTGTGGTTTGCGCTGCATATTAATTTCTGTCCG,Distal Intergenic,4,90452874,90453625,752,1,Gm12635-201,-15069,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,5,100417247,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
643,cg18512369,-0.000000791,0.00000494,-0.160233482,0.872801514,loss,ns,0.0000111,0.00000839,1.31776125,0.188556577,pos,ns,-0.000141363,0.002457334,-0.0575271,0.954162381,neg,ns,0.02037771,0.00012757,0.0000845,1.509564527,0.13217312,pos,ns,0.908837365,Usp27x,Usp27x_Intron,X,7416657,7416706,7416657,7416658,50,+,CGCGTGGGATTGCCAAGCAACAGCTTATGAAACGAATTTAAACCATGGCA,"Intron (2010204K13Rik-204/2010204K13Rik-204, intron 1 of 1)",20,7372591,7375830,3240,2,Usp27x-201,-40827,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,6,54651,ENSMUSG00000046269,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27294,cg14839559,0.0000661,0.0000147,4.50150857,0.00000956,gain,ns,-0.0000329,0.000025,-1.317733475,0.188565867,neg,ns,-0.006956807,0.007310229,-0.951653794,0.342013973,neg,ns,0.465956151,0.000407499,0.000251398,1.620929594,0.106049411,pos,ns,0.222981343,Prrx1,Prrx1_Promoter,1,163314889,163314938,163314937,163314938,50,-,AGAACATTTGATGCCATCAAAGGGCTGTAGATTGAAACCAGATGTGCTCG,Promoter (1-2kb),1,163245119,163313710,68592,2,Prrx1-201,-1228,Prrx1-202;Prrx1-201;Prrx1-204;Prrx1-203,Prrx1;Prrx1;Prrx1;Prrx1,0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,11,18933,ENSMUSG00000026586,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19272,cg13303724,-0.00000104,0.000000699,-1.48798846,0.137770426,loss,ns,-0.00000157,0.00000119,-1.317635815,0.188598534,neg,ns,-0.000191407,0.000348129,-0.549816208,0.582841331,neg,ns,0.234449658,0.00000285,0.000012,0.23770405,0.812267669,pos,ns,0.018583814,Tnpo1,Tnpo1_fiveUTR,13,98891034,98891083,98891034,98891035,50,-,CGAATTTGCAATCTGGCCCCAAGATCCGCTCACGGGAGCCCCCTGGGTCC,Promoter (<=1kb),13,98839019,98891040,52022,2,Tnpo1-201,0,Tnpo1-201;Tnpo1-202;Tnpo1-204;Tnpo1-205;Tnpo1-203,Tnpo1;Tnpo1;Tnpo1;Tnpo1;Tnpo1,0;0;0;0;-20,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,9,238799,ENSMUSG00000009470,conserved gene but different region,13,98890820,98891237,418,*,418,43,0.648325359,1.01204955,0.102870813,1.65E-33,CpGisland,TRUE,U1,Pr-A
20563,cg20347552,0.0000221,0.00000647,3.421825881,0.000705494,gain,ns,0.0000145,0.000011,1.317417754,0.188671491,pos,ns,0.009771704,0.003219702,3.034971642,0.002609382,pos,ns,2.583462403,-0.000106108,0.000110725,-0.958297345,0.338659616,neg,ns,0.480400553,Pde1b,Pde1b_Exon,15,103503528,103503577,103503576,103503577,50,-,CCCCTGGAGCTGAAGTCAGCCCCCAGCAAGAAGATGTGGATTAAGCTTCG,Promoter (<=1kb),15,103503034,103530051,27018,1,Pde1b-202,494,Nckap1l-203;Nckap1l-201;Nckap1l-205;Pde1b-202;Pde1b-201;Pde1b-203,Nckap1l;Nckap1l;Nckap1l;Pde1b;Pde1b;Pde1b,0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,18574,ENSMUSG00000022489,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
24869,cg04323926,-0.0000163,0.0000131,-1.241507363,0.215356929,loss,ns,-0.0000293,0.0000223,-1.31734589,0.188695539,neg,ns,0.034893196,0.006524319,5.348174718,0.000000173,pos,ns,6.762422084,-0.001957022,0.000224371,-8.722269417,1.70E-16,neg,yes,0.477280812,Rnf19b,Rnf19b_Exon,4,129082784,129082833,129082832,129082833,50,+,CCCAAAGACACAGCCAGTCTTGGTGCAATTAGTGACAACGCAAGCACTCG,"Exon (Rnf19b-206/Rnf19b, exon 8 of 9)",4,129058271,129084526,26256,1,Rnf19b-206,24513,Rnf19b-206;Rnf19b-201;Rnf19b-205;Rnf19b-202;Rnf19b-203;Rnf19b-204,Rnf19b;Rnf19b;Rnf19b;Rnf19b;Rnf19b;Rnf19b,0;0;0;0;0;-1052,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,75234,ENSMUSG00000028793,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22318,cg20399260,-0.0000743,0.0000271,-2.73562632,0.006584856,loss,ns,-0.0000608,0.0000461,-1.317308065,0.188708198,neg,ns,-0.021209604,0.013511378,-1.56975882,0.117491339,neg,ns,0.929994147,-0.000941782,0.000464655,-2.026840484,0.043534358,neg,ns,0.186821666,Arntl,Arntl_fiveUTR,7,113207431,113207480,113207479,113207480,50,-,AAGGGGGGTTGGGCACAGCGATTGGTGGGCGGGGGGCCGGGCCTGGGCCG,Promoter (<=1kb),7,113207465,113314126,106662,1,Arntl-201,0,Arntl-201;Arntl-203;Arntl-204,Arntl;Arntl;Arntl,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,6,11865,ENSMUSG00000055116,conserved gene but different region,7,113207255,113208466,1212,*,1212,121,0.691419142,0.844647948,0.099834984,1.89E-91,CpGisland,TRUE,U1,Pr-A
12832,cg18384829,0.000000228,0.00000124,0.184169757,0.854000698,gain,ns,-0.00000277,0.0000021,-1.317255919,0.18872565,neg,ns,0.000417693,0.00061574,0.678359037,0.498050129,pos,ns,0.302726943,-0.0000161,0.0000212,-0.761954769,0.446666307,neg,ns,0.963408494,Lysmd4,Lysmd4_threeUTR,7,67268278,67268327,67268326,67268327,50,+,TTTGAAAATAAAATCACTATCTTCATTTAGTTTGCTGAATCTGTCCTCCG,3' UTR,7,67222544,67307330,84787,1,Lysmd4-206,45734,Lysmd4-206;Mef2a-208;Mef2a-204;Mef2a-206;Mef2a-211;Mef2a-203;Mef2a-202;Mef2a-201;Mef2a-210;Mef2a-205;Mef2a-209,Lysmd4;Mef2a;Mef2a;Mef2a;Mef2a;Mef2a;Mef2a;Mef2a;Mef2a;Mef2a;Mef2a,0;0;0;0;0;0;0;0;-2116;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,3,75099,ENSMUSG00000043831,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24667,cg18230857,-0.00000506,0.00000201,-2.519647036,0.012249623,loss,ns,0.00000449,0.00000341,1.317221864,0.188737048,pos,ns,0.00263202,0.000999079,2.634446323,0.00885066,pos,ns,2.05302435,-0.0000982,0.0000344,-2.858723322,0.004541674,neg,ns,0.060497815,Nxph4,Nxph4_Exon,10,127526199,127526248,127526247,127526248,50,-,ACAGATGACTTTGAAGGGCTTGGCACAGAGCCAGGCGGCCTGGCTCTGCG,"Exon (Nxph4-201/Nxph4, exon 2 of 2)",10,127525473,127534559,9087,2,Nxph4-201,8311,Nxph4-201;Shmt2-206;Shmt2-201;Shmt2-204;Shmt2-205;Shmt2-202,Nxph4;Shmt2;Shmt2;Shmt2;Shmt2;Shmt2,0;0;0;-3797;-3798;-3835,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,104080,ENSMUSG00000040258,conserved gene but different region,10,127526192,127526434,243,*,243,23,0.637860082,0.930569431,0.094650206,2.88E-17,CpGisland,TRUE,NA,NRS
127,cg22241443,-0.00000438,0.00000289,-1.514539801,0.13090789,loss,ns,-0.00000647,0.00000491,-1.317200996,0.188744033,neg,ns,-0.002768269,0.001438557,-1.924337698,0.055227424,neg,ns,1.257845213,0.0000614,0.0000495,1.240447954,0.215747763,pos,ns,0.9454222,Kdm2a,Kdm2a_Exon,19,4324385,4324434,4324385,4324386,50,-,CGGCTGAGGTAGCGGAAGACAGACATCCAGACCTCCCGCTGCATCCAGCT,"Exon (Kdm2a-201/Kdm2a, exon 17 of 21)",19,4314419,4398285,83867,2,Kdm2a-201,73851,Kdm2a-201;Kdm2a-202;Kdm2a-213;Kdm2a-211;Kdm2a-207;Kdm2a-214;Kdm2a-212;Kdm2a-210,Kdm2a;Kdm2a;Kdm2a;Kdm2a;Kdm2a;Kdm2a;Kdm2a;Kdm2a,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,21,30,225876,ENSMUSG00000054611,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6716,cg04384615,0.00000368,0.0000188,0.195402165,0.845206133,gain,ns,-0.0000422,0.000032,-1.316929956,0.18883477,neg,ns,0.001679851,0.009379946,0.179089608,0.857984333,pos,ns,0.066520642,-0.000875475,0.000322576,-2.714015714,0.007019298,neg,ns,0.456712676,Pcdh1,Pcdh1_Intergenic_downstream,18,38177377,38177426,38177425,38177426,50,-,GGTGCTAATTAAAGTTAATTACTGTTTCCTTGTGAAGTAACCTCTCCTCG,Distal Intergenic,18,38188890,38203163,14274,2,Pcdh1-204,25786,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,17,75599,ENSMUSG00000051375,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17832,cg14576454,-0.000068,0.0000125,-5.439709131,0.000000109,loss,yes,0.000028,0.0000212,1.316864996,0.188856521,pos,ns,-0.012628823,0.006219567,-2.030498704,0.043159206,neg,ns,1.364926549,0.000252037,0.00021389,1.178346588,0.239562176,pos,ns,0.878245489,Irx3,Irx3_Intron,8,91990951,91991000,91990999,91991000,50,-,GTCTAACTAACCTTGCTGTAATGAATTTTTAAATGTAATGGTTTCTGTCG,"Intron (Gm36670-202/Gm36670-202, intron 1 of 2)",8,91798525,91802067,3543,2,Irx3-202,-188933,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,36,16373,ENSMUSG00000031734,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12394,cg09443851,0.0000379,0.0000139,2.727943157,0.006736448,gain,ns,-0.000031,0.0000236,-1.316713903,0.188907122,neg,ns,0.034864457,0.006907379,5.047422355,0.000000765,pos,ns,6.116433521,-0.000869019,0.000237544,-3.658345126,0.00029821,neg,ns,0.461665666,Fign,Fign_Intron,2,64095380,64095429,64095428,64095429,50,+,TACAGCTTTAACATCACAGAGGGAAATCGCCCATCTGGCAATCCCATTCG,"Intron (Fign-203/Fign, intron 2 of 2)",2,63971507,64098012,126506,2,Fign-203,2583,Fign-203;Fign-201;Fign-202;Fign-204,Fign;Fign;Fign;Fign,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,84,60344,ENSMUSG00000075324,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11814,cg13016707,-0.00000129,0.000000968,-1.329148352,0.184776407,loss,ns,0.00000217,0.00000164,1.316522579,0.18897121,pos,ns,0.000147021,0.000481882,0.305097937,0.760496306,pos,ns,0.118902891,-0.0000141,0.0000166,-0.849976144,0.39599432,neg,ns,0.975167192,Clcn3,Clcn3_Exon,8,60913089,60913138,60913137,60913138,50,+,TTGAACATTATTGAAGCGGGGTCTTGGTTTGCCGTCTGGGCCATATGCCG,"Exon (Clcn3-202/Clcn3, exon 12 of 12)",8,60910389,60955233,44845,2,Clcn3-202,42095,Clcn3-202;Clcn3-203;Clcn3-209;Clcn3-205;Clcn3-206;Clcn3-201;Clcn3-204;Hpf1-207,Clcn3;Clcn3;Clcn3;Clcn3;Clcn3;Clcn3;Clcn3;Hpf1,0;0;0;0;0;0;0;7058,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,12725,ENSMUSG00000004319,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5831,cg25696367,0.0000141,0.0000047,3.003181914,0.002889284,gain,ns,-0.0000105,0.00000799,-1.316392709,0.189014722,neg,ns,0.000176248,0.002340863,0.075291894,0.940031034,pos,ns,0.026857808,-0.00027669,0.0000805,-3.437048678,0.000668391,neg,ns,0.873107643,Mylk,Mylk_Exon,16,34914961,34915010,34915009,34915010,50,-,TGAGGACGTGTTCACCCTGGTTCTAAAGATGGTGCAGCCCTGGCATGCCG,"Exon (Mylk-201/Mylk, exon 14 of 32)",16,34784921,35002420,217500,1,Mylk-201,130040,Mylk-201;Mylk-207;Mylk-208,Mylk;Mylk;Mylk,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,7,107589,ENSMUSG00000022836,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11804,cg11367948,0.000111787,0.0000225,4.972683782,0.0000011,gain,yes,0.0000503,0.0000382,1.316250922,0.189062234,pos,ns,0.088721496,0.011188631,7.929611604,4.02E-14,pos,yes,13.39609031,-0.002605567,0.000384776,-6.771643715,6.39E-11,neg,yes,0.543546159,Dapk1,Dapk1_threeUTR,13,60718056,60718105,60718056,60718057,50,+,CGGATCAAGATCATTGACTTTGGGTTGGCCCATAAAATTGACTTTGGAAA,3' UTR,13,60601947,60762802,160856,1,Dapk1-207,116109,Dapk1-207;Dapk1-202;Dapk1-203;Dapk1-201;Dapk1-204,Dapk1;Dapk1;Dapk1;Dapk1;Dapk1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,2,69635,ENSMUSG00000021559,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17527,cg10790532,0.000000447,0.00000135,0.332091413,0.740044658,gain,ns,0.00000301,0.00000229,1.316175433,0.189087534,pos,ns,0.002040857,0.000670268,3.044835102,0.002527738,pos,ns,2.597267925,-0.0000777,0.0000231,-3.369696297,0.000847632,neg,ns,0.967314926,Nup160,Nup160_Exon,2,90703828,90703877,90703828,90703829,50,-,CGAATGAATCTTACCCAGCTCTATGGTAGTAACACAGCAGGGTATATTGT,"Exon (Nup160-201/Nup160, exon 18 of 37)",2,90677215,90736328,59114,1,Nup160-201,26613,Nup160-201;Nup160-205;Nup160-203,Nup160;Nup160;Nup160,0;0;4087,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,59015,ENSMUSG00000051329,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17973,cg15781723,0.000000216,0.00000075,0.287931873,0.77359129,gain,ns,0.00000168,0.00000127,1.316161852,0.189092086,pos,ns,0.000216981,0.000373057,0.581628962,0.56123932,pos,ns,0.250851911,-0.00000134,0.0000128,-0.104632048,0.916735448,neg,ns,0.022996288,Prdm11,Prdm11_fiveUTR,2,93046126,93046175,93046174,93046175,50,-,CCCCTGCTTTGACCACCATCTTATTAGTACAGGAAATGACATGGAAAACG,Promoter (<=1kb),2,92974906,93046144,71239,2,Prdm11-205,0,Prdm11-202;Prdm11-206;Prdm11-205;Prdm11-201;Prdm11-204,Prdm11;Prdm11;Prdm11;Prdm11;Prdm11,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,3,100042784,ENSMUSG00000075028,conserved gene but different region,2,93046174,93046584,411,*,411,41,0.630170316,1.006029851,0.099756691,2.18E-31,CpGisland,TRUE,U1,Pr-A
10053,cg01120541,-0.000007,0.00000589,-1.189779052,0.235043661,loss,ns,-0.0000132,0.00001,-1.315753132,0.189229114,neg,ns,-0.0048148,0.002929282,-1.64367944,0.101256199,neg,ns,0.994578379,0.0000584,0.000100738,0.579258832,0.562835219,pos,ns,0.052396105,Maml3,Maml3_fiveUTR,3,52104601,52104650,52104601,52104602,50,-,CGGACACGCGCGACACACACTCACTCCACACCGCATCGGAAAACGGCAAG,Promoter (<=1kb),3,51685907,52105076,419170,2,Maml3-202,426,Maml3-202,Maml3,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,14,32,433586,ENSMUSG00000061143,conserved gene and region,3,52104524,52104648,125,*,125,14,0.592,1.340996169,0.112,1.05E-11,CpGisland,TRUE,U1,Pr-A
4103,cg20294245,0.0000537,0.0000127,4.233160042,0.0000304,gain,ns,0.0000284,0.0000216,1.315642007,0.189266383,pos,ns,0.022307186,0.006318559,3.530423085,0.00047784,pos,ns,3.320717698,-0.000706995,0.000217295,-3.253622808,0.001265217,neg,ns,0.333472346,Gm12070,Gm12070_Intergenic_downstream,11,26806766,26806815,26806814,26806815,50,-,CACCTCATCAATCCGCTCCTATCAATGTCCCAGCCATGGAGGTGACTTCG,Distal Intergenic,11,26786633,26787634,1002,1,Gm12070-201,20182,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,8,654472,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9310,cg16366997,0.00000422,0.00000175,2.416020376,0.016268914,gain,ns,0.00000391,0.00000297,1.315201817,0.189414065,pos,ns,0.00055058,0.000870321,0.632617845,0.527449569,pos,ns,0.277819059,-0.0000114,0.0000299,-0.38208141,0.702662772,neg,ns,0.954954524,Nr4a3,Nr4a3_Intron,4,48059296,48059345,48059296,48059297,50,-,CGCTAATATGATGGATGTCAGTATCAACATTCAGAGTGATCTCGACAGGT,"Intron (Nr4a3-201/Nr4a3, intron 5 of 7)",4,48045153,48086445,41293,1,Nr4a3-201,14143,Nr4a3-201;Nr4a3-203;Nr4a3-202,Nr4a3;Nr4a3;Nr4a3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,20,18124,ENSMUSG00000028341,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13075,cg18349747,-0.0000253,0.0000196,-1.292703362,0.197076315,loss,ns,0.0000438,0.0000333,1.315186942,0.189419057,pos,ns,-0.01149102,0.009752181,-1.178302492,0.239579722,neg,ns,0.620549943,0.000637375,0.000335377,1.900474695,0.058298364,pos,ns,0.429506088,Chd3,Chd3_Promoter,11,69369797,69369846,69369797,69369798,50,+,CGCTCAGAAATATTTCTCAGAGCTGAGGCACTAAGATGGCCGCCTTGAAA,Promoter (<=1kb),11,69343273,69369406,26134,2,Chd3-202,-391,Chd3-202;Chd3-201,Chd3;Chd3,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,26,216848,ENSMUSG00000018474,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
3589,cg26920416,-0.0000134,0.00000704,-1.900630332,0.058277882,loss,ns,0.0000157,0.000012,1.315154154,0.189430061,pos,ns,-0.004259204,0.003501409,-1.216425671,0.224748176,neg,ns,0.648303825,-0.0000953,0.000120413,-0.791189794,0.429438158,neg,ns,0.803870085,Cacna1b,Cacna1b_Exon,2,24625296,24625345,24625344,24625345,50,+,TTCAGCATCTCAAACATGTCATTGTAACTGATGCGCCCACTGGAAACCCG,"Exon (Cacna1b-202/Cacna1b, exon 38 of 46)",2,24603887,24763152,159266,2,Cacna1b-202,137807,Cacna1b-202;Cacna1b-204;Cacna1b-203;Cacna1b-201;Cacna1b-205;Cacna1b-207;Cacna1b-210,Cacna1b;Cacna1b;Cacna1b;Cacna1b;Cacna1b;Cacna1b;Cacna1b,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,12287,ENSMUSG00000004113,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24001,cg22982934,-0.000000835,0.00000111,-0.754738126,0.450979102,loss,ns,-0.00000247,0.00000188,-1.315081492,0.189454449,neg,ns,0.000361079,0.000550961,0.655363151,0.512720004,pos,ns,0.290119738,-0.0000248,0.0000189,-1.30827056,0.191750743,neg,ns,0.988224105,Atxn2,Atxn2_Exon,5,121813477,121813526,121813477,121813478,50,+,CGCCCTCGCTCAAAGTGCACTACAGCCCATTCCAGTCTCGACAACAGCGC,"Exon (Atxn2-201/Atxn2, exon 24 of 25)",5,121711609,121814950,103342,1,Atxn2-201,101868,Atxn2-201;Atxn2-209;Atxn2-214;Atxn2-215;Atxn2-217;Atxn2-210;Atxn2-203;Atxn2-206;Atxn2-212;Atxn2-211;Atxn2-205;Atxn2-218;Sh2b3-205;Sh2b3-202;Sh2b3-208;Sh2b3-204;Sh2b3-201;Sh2b3-203,Atxn2;Atxn2;Atxn2;Atxn2;Atxn2;Atxn2;Atxn2;Atxn2;Atxn2;Atxn2;Atxn2;Atxn2;Sh2b3;Sh2b3;Sh2b3;Sh2b3;Sh2b3;Sh2b3,0;0;0;11731;11366;0;0;0;2813;2512;0;0;23299;23333;15215;22578;23324;23291,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,16,20239,ENSMUSG00000042605,conserved gene but different region,5,121813431,121813604,174,*,174,15,0.632183908,0.881458967,0.086206897,8.65E-11,CpGisland,TRUE,U10,Tr-S
13564,cg03770593,-0.00000461,0.00000154,-2.985103481,0.00306049,loss,ns,0.00000345,0.00000262,1.314838454,0.189536037,pos,ns,0.000769564,0.000768069,1.001947274,0.317150496,pos,ns,0.498734605,-0.0000172,0.0000264,-0.649592237,0.516436674,neg,ns,0.055562287,Slc25a12,Slc25a12_Exon,2,71367471,71367520,71367519,71367520,50,+,GTCTCTTATGCAATAAAAGCAGCAGCAGAGAGTTGGAGTCACCTTGACCG,Promoter (<=1kb),2,71271063,71367749,96687,2,Slc25a12-206,229,Slc25a12-206;Slc25a12-207,Slc25a12;Slc25a12,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,3,78830,ENSMUSG00000027010,conserved gene and region,2,71367519,71367773,255,*,255,38,0.721568628,1.147017046,0.149019608,1.30E-36,CpGisland,TRUE,U1,Pr-A
20173,cg09684249,-0.0000164,0.00001,-1.63188658,0.103718758,loss,ns,0.0000224,0.000017,1.314795323,0.189550518,pos,ns,0.008218735,0.004989015,1.647366324,0.100495987,pos,ns,0.997851281,-0.000476506,0.000171572,-2.777298446,0.005815072,neg,ns,0.648665573,Btbd7,Btbd7_Exon,12,102812747,102812796,102812747,102812748,50,+,CGGTGCACCCATTTAGAGCCATATGGATGAGAACTCCACTTGAGGATGGC,"Exon (Btbd7-206/Btbd7, exon 5 of 12)",12,102780797,102878406,97610,2,Btbd7-206,65610,Btbd7-206;Btbd7-201;Btbd7-202;Btbd7-205,Btbd7;Btbd7;Btbd7;Btbd7,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,238386,ENSMUSG00000041702,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9162,cg03603403,-0.0000135,0.00000696,-1.939565645,0.053339452,loss,ns,0.0000156,0.0000118,1.31462755,0.189606858,pos,ns,-0.004998066,0.003466025,-1.442016747,0.150307137,neg,ns,0.823020399,0.00020021,0.000119196,1.679666734,0.094029645,pos,ns,0.701120978,Rnf144b,Rnf144b_Intergenic_downstream,13,47310898,47310947,47310946,47310947,50,-,AATCAGAGGCACAGATTAGCAACAGCTGCAAGTCATTAGTGACAGACACG,Distal Intergenic,13,47193825,47246417,52593,1,Rnf144b-202,117122,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,218215,ENSMUSG00000038068,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11947,cg25821931,-0.0000267,0.0000125,-2.129911863,0.033966252,loss,ns,0.000028,0.0000213,1.31459147,0.189618976,pos,ns,0.008860753,0.006240126,1.4199638,0.156623086,pos,ns,0.805144225,-0.000468696,0.000214597,-2.184068766,0.029706299,neg,ns,0.716701263,Pard3b,Pard3b_Intron,1,61782775,61782824,61782823,61782824,50,-,TTCAAGCTGTGTAATTATGAAACCCATATAGGTTAAAAGTTCAGAACTCG,"Intron (Pard3b-205/Pard3b, intron 2 of 4)",1,61638824,62078259,439436,1,Pard3b-205,143951,Pard3b-205;Pard3b-202;Pard3b-206;Pard3b-201;Pard3b-203,Pard3b;Pard3b;Pard3b;Pard3b;Pard3b,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,4,72823,ENSMUSG00000052062,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
948,cg02530738,-0.00000564,0.00000143,-3.956702488,0.0000943,loss,ns,0.00000319,0.00000242,1.314381356,0.189689555,pos,ns,0.000794129,0.000709921,1.118615155,0.264170407,pos,ns,0.578115834,-0.0000171,0.0000244,-0.702376094,0.4829717,neg,ns,0.052012004,Stxbp5,Stxbp5_fiveUTR,10,9900641,9900690,9900689,9900690,50,-,CGGTCAGGCCGTCCAGCACCTTCCTGATGTTGAATTTCCTCATGGTCTCG,Promoter (<=1kb),10,9755547,9900683,145137,2,Stxbp5-201,0,Stxbp5-201;Stxbp5-209;Stxbp5-202,Stxbp5;Stxbp5;Stxbp5,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,5,78808,ENSMUSG00000019790,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
18739,cg14398345,-0.000000106,0.000000444,-0.238896606,0.811343611,loss,ns,0.000000992,0.000000755,1.314339205,0.189703716,pos,ns,0.000227825,0.000221066,1.030575377,0.303543363,pos,ns,0.517779258,-0.0000099,0.0000076,-1.301753746,0.193967071,neg,ns,0.98923562,Dscam,Dscam_Exon,16,97056571,97056620,97056619,97056620,50,-,TGCCGTTGGGGTGGACGTGGCGGATCCCGGGGACATCGTAGATCTCCTCG,"Exon (Dscam-201/Dscam, exon 2 of 33)",16,96590840,97170752,579913,2,Dscam-201,114132,Dscam-201,Dscam,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,12,13508,ENSMUSG00000050272,conserved gene and region,16,97056586,97056624,39,*,39,6,0.692307692,1.285714286,0.153846154,0.00000642,CpGisland,TRUE,U15,NS
26428,cg23593684,0.0000186,0.0000158,1.179514405,0.23909781,gain,ns,-0.0000353,0.0000268,-1.314261028,0.189729983,neg,ns,0.000565553,0.007858197,0.071969869,0.942672297,pos,ns,0.025639256,0.00000615,0.000270243,0.022774843,0.981844527,pos,ns,0.198565794,Foxa2,Foxa2_Intergenic_downstream,2,147928577,147928626,147928577,147928578,50,-,CGAAGTCCTGTTGATAAATCAACAAAAGCCCTGTTTGCACAACGCAAGCC,Distal Intergenic,2,148044240,148045464,1225,2,Foxa2-203,116887,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,25,15376,ENSMUSG00000037025,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6992,cg25756885,-0.00000289,0.00000272,-1.062588251,0.288795774,loss,ns,0.00000608,0.00000463,1.314183046,0.189756187,pos,ns,0.003185888,0.001355562,2.350234052,0.019388218,pos,ns,1.712462099,-0.000137051,0.0000466,-2.939895348,0.003530088,neg,ns,0.941667276,Cdk19,Cdk19_threeUTR,10,40436090,40436139,40436090,40436091,50,-,CGTGCATCAAAAGCAAATAAAAAGCCCATGCAGTTGCCAAGATCTATGGT,3' UTR,10,40339564,40480868,141305,1,Cdk19-205,96526,Cdk19-205;Cdk19-201;Cdk19-202;Cdk19-204;Cdk19-203,Cdk19;Cdk19;Cdk19;Cdk19;Cdk19,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,4,78334,ENSMUSG00000038481,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5334,cg20010444,-0.00000887,0.00000707,-1.255776943,0.210142504,loss,ns,0.0000158,0.000012,1.314172545,0.189759716,pos,ns,0.002191843,0.003516798,0.623249517,0.533578828,pos,ns,0.272801411,-0.00011616,0.000120942,-0.960455624,0.337574473,neg,ns,0.886856585,Nkx1-1,Nkx1-1_Intergenic_upstream,5,33502361,33502410,33502361,33502362,50,+,CGTGGGGCTGGCCTCTCAGTTAAGATGTTATTTAGTTCTAATTATCAGAT,Distal Intergenic,5,33430734,33433976,3243,2,Nkx1-1-201,-68385,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,13,672284,ENSMUSG00000029112,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24081,cg04541229,0.000102457,0.00000991,10.34027172,1.00E-21,gain,yes,0.0000221,0.0000168,1.313822067,0.18987752,pos,ns,0.013457103,0.004931592,2.728754199,0.006720298,pos,ns,2.172611476,0.000155005,0.000169597,0.913957911,0.36144926,pos,ns,0.152083061,Zic5,Zic5_Intergenic_downstream,14,122453923,122453972,122453923,122453924,50,+,CGGCGTCGTTAAGGCAACCCCAAAGTATTCCTCCTATAATAAGTTCCACT,Downstream (2-3kb),14,122459193,122460021,829,2,Zic5-202,6049,Zic5-201,Zic5,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,14,26,65100,ENSMUSG00000041703,mapped to different genes,14,122453676,122453930,255,*,255,17,0.564705882,0.840279124,0.066666667,2.37E-10,CpGisland,TRUE,U3,Pr-B
3918,cg02132633,-0.0000197,0.00000738,-2.674149293,0.00788914,loss,ns,-0.0000165,0.0000125,-1.313460222,0.189999202,neg,ns,-0.00892784,0.003671484,-2.431670773,0.015595548,neg,ns,1.806999369,0.00011541,0.000126262,0.914052689,0.361399538,pos,ns,0.196896107,Celf4,Celf4_fiveUTR,18,25753582,25753631,25753582,25753583,50,+,CGTTGTCAGCCTGTCCGTTTGCTAACGTGGCCATCTTTATATACATAGAG,Promoter (<=1kb),18,25477632,25753983,276352,2,Celf4-202,352,Celf4-202;Celf4-201;Celf4-203;Celf4-207;Celf4-206;Celf4-209;Celf4-205,Celf4;Celf4;Celf4;Celf4;Celf4;Celf4;Celf4,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,59,108013,ENSMUSG00000024268,conserved gene but different region,18,25753376,25753608,233,*,233,18,0.592274678,0.882575758,0.077253219,5.03E-12,CpGisland,TRUE,U3,Pr-B
26176,cg00119476,0.00000149,0.00000318,0.46879739,0.63954396,gain,ns,-0.00000709,0.0000054,-1.313451678,0.190002076,neg,ns,-0.001079543,0.001581811,-0.682472848,0.495449651,neg,ns,0.305000473,-0.0000752,0.0000544,-1.382472417,0.167821843,neg,ns,0.923276261,Lmo4,Lmo4_Intergenic_upstream,3,144223913,144223962,144223913,144223914,50,-,CGTACTCTGGGCAAACGGAGCCAGGATTAATTAATAGAGATGAAAGGGAA,Distal Intergenic,3,144188530,144205220,16691,2,Lmo4-201,-18742,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,54,16911,ENSMUSG00000028266,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2332,cg11697107,-0.00000133,0.000000877,-1.51381017,0.131092845,loss,ns,-0.00000196,0.00000149,-1.313418908,0.190013098,neg,ns,0.00000607,0.000436557,0.013907159,0.988912996,pos,ns,0.004841916,-0.0000174,0.000015,-1.158994199,0.247350537,neg,ns,0.02653737,Meis1,Meis1_Promoter,11,19019004,19019053,19019004,19019005,50,-,CGTCTTACACAATGCATTGGGCTGCAGCAAGTAGGCTCCTCGGCAGGGGT,Promoter (<=1kb),11,18879817,19018985,139169,2,Meis1-206,-68,Meis1-206;Meis1-202;Meis1-209;Meis1-201;Meis1-208;Meis1-207;Meis1-204;Meis1-205,Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1,0;0;0;0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,8,88,17268,ENSMUSG00000020160,conserved gene but different region,11,19018885,19019116,232,*,232,18,0.590517241,0.911392405,0.077586207,4.67E-12,CpGisland,TRUE,U1,Pr-A
14831,cg01962553,0.0000093,0.00000321,2.899050553,0.00401007,gain,ns,-0.00000716,0.00000545,-1.313254951,0.190068256,neg,ns,-0.001062014,0.001597189,-0.664926544,0.506591825,neg,ns,0.295341823,0.000137361,0.0000549,2.500778321,0.01290794,pos,ns,0.93195608,Fam172a,Fam172a_Intron,13,77893945,77893994,77893945,77893946,50,-,CGAGAGTCCATTTTCTCACTAATGAAGAGGGGAATAAACGAACCAGTGTA,"Intron (Fam172a-203/Fam172a, intron 6 of 10)",13,77708690,78163655,454966,1,Fam172a-203,185255,Fam172a-203;Fam172a-201;Fam172a-202;Fam172a-209;Fam172a-205;Fam172a-207;Fam172a-208,Fam172a;Fam172a;Fam172a;Fam172a;Fam172a;Fam172a;Fam172a,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,24,68675,ENSMUSG00000064138,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
153,cg11326474,-0.000012,0.0000062,-1.940543355,0.053220108,loss,ns,0.0000138,0.0000105,1.313207359,0.190084269,pos,ns,-0.002655365,0.00308693,-0.860196074,0.390345723,neg,ns,0.408550575,0.0000361,0.000106159,0.340242119,0.733904637,pos,ns,0.887824209,Gria4,Gria4_Exon,9,4424281,4424330,4424281,4424282,50,+,CGAGGAAGTTGGGTTAAAAGTCTGTGCACTCTTTGCCACCTTCATTCTCT,"Exon (Gria4-202/Gria4, exon 16 of 17)",9,4417896,4796142,378247,2,Gria4-202,371812,Gria4-202;Gria4-204;Gria4-201,Gria4;Gria4;Gria4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,16,18,14802,ENSMUSG00000025892,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12714,cg20719840,0.00000307,0.00000352,0.872589764,0.38356208,gain,ns,-0.00000785,0.00000598,-1.313042098,0.190139881,neg,ns,-0.005409064,0.001751897,-3.087546379,0.002200595,neg,ns,2.657459963,0.000137266,0.0000602,2.278356778,0.023385453,pos,ns,0.847835428,Gm43516,Gm43516_Intergenic_upstream,3,66935745,66935794,66935793,66935794,50,-,AACATTGTTTCCGCCATGATTGCCGGAGCTCCCTGTGGAGTTACTGTCCG,Distal Intergenic,3,66953541,66953862,322,1,Gm43516-201,-17796,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,11,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2355,cg03789886,0.000082,0.000008,10.2522306,1.98E-21,gain,yes,-0.0000178,0.0000136,-1.312963628,0.190166291,neg,ns,0.013721647,0.003980254,3.44742967,0.000644142,pos,ns,3.191018113,-0.000442944,0.000136881,-3.235983981,0.001343296,neg,ns,0.10058463,Tfap2d,Tfap2d_Exon,1,19104789,19104838,19104837,19104838,50,-,AATGCACCCAGATCAAAGACTCCTGCCAGGGCCCAGCCTGGGGCTGGCCG,"Exon (Tfap2d-201/Tfap2d, exon 2 of 8)",1,19103022,19166346,63325,1,Tfap2d-201,1767,Tfap2d-201;Tfap2d-202,Tfap2d;Tfap2d,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,14,23,226896,ENSMUSG00000042596,conserved gene and region,1,19104837,19104923,87,*,87,10,0.701149425,0.97972973,0.114942529,1.55E-08,CpGisland,TRUE,U13,Hc-P
17571,cg17096302,0.00000493,0.0000138,0.357933192,0.720636901,gain,ns,0.0000307,0.0000234,1.312518837,0.190316042,pos,ns,0.001424375,0.006859878,0.207638475,0.835647598,pos,ns,0.077976831,-0.0000983,0.000235911,-0.416891491,0.677046308,neg,ns,0.187377432,Dlg2,Dlg2_fiveUTR,7,91090851,91090900,91090851,91090852,50,-,CGTTTTGTAGTCAGAGAAAACAGAGATCAATGCATTTTCAAACTGACAGA,5' UTR,7,90477231,92449247,1972017,1,Dlg2-217,613620,Dlg2-217;Dlg2-204;Dlg2-209;Dlg2-201,Dlg2;Dlg2;Dlg2;Dlg2,0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,21,23859,ENSMUSG00000052572,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25903,cg24546928,-0.00000455,0.0000114,-0.398193966,0.690761308,loss,ns,0.0000255,0.0000194,1.312378579,0.190363282,pos,ns,0.007012638,0.005686466,1.23321535,0.218429718,pos,ns,0.660688275,-0.000241136,0.000195557,-1.233070513,0.218483671,neg,ns,0.851431327,Arhgef10l,Arhgef10l_Exon,4,140579326,140579375,140579374,140579375,50,-,GACAGGGCGATCTGGAACATGGAGTGGCAGTGCAGGATCTCCTTCACGCG,"Exon (Arhgef10l-204/Arhgef10l, exon 4 of 18)",4,140514485,140581818,67334,2,Arhgef10l-204,2443,Arhgef10l-208;Arhgef10l-204;Arhgef10l-205;Arhgef10l-201;Arhgef10l-206;Arhgef10l-203;Arhgef10l-202;Arhgef10l-211;Arhgef10l-207,Arhgef10l;Arhgef10l;Arhgef10l;Arhgef10l;Arhgef10l;Arhgef10l;Arhgef10l;Arhgef10l;Arhgef10l,-2232;0;0;0;0;0;0;0;12665,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,72754,ENSMUSG00000040964,conserved gene and region,4,140579312,140579480,169,*,169,11,0.603550296,0.728448276,0.065088757,0.000000917,CpGisland,TRUE,U10,Tr-S
25959,cg26761047,-0.0000046,0.00000139,-3.313765847,0.001029531,loss,ns,-0.0000031,0.00000236,-1.312152724,0.19043937,neg,ns,-0.000564054,0.00069158,-0.815601878,0.415354081,neg,ns,0.381581518,0.00000582,0.0000238,0.244577201,0.806945624,pos,ns,0.041383819,Ddi2,Ddi2_fiveUTR,4,141723131,141723180,141723131,141723132,50,-,CGACCTGGAGGGAAAAGGTCACCTCGGAGAGGTCCCTCCGCACACAGTAC,Promoter (<=1kb),4,141677549,141723419,45871,2,Ddi2-201,239,Ddi2-201;Ddi2-202,Ddi2;Ddi2,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,2,68817,ENSMUSG00000078515,mapped to different genes,4,141722743,141723690,948,*,948,107,0.707805907,0.90174952,0.112869198,3.03E-87,CpGisland,TRUE,U1,Pr-A
7778,cg15383487,0.00000805,0.00000404,1.994088281,0.047018103,gain,ns,-0.00000899,0.00000686,-1.311961754,0.190503723,neg,ns,-0.001211102,0.002008341,-0.603035983,0.546925671,neg,ns,0.262071692,-0.000061,0.0000691,-0.882661892,0.378102911,neg,ns,0.804416303,Arhgap15,Arhgap15_Intron,2,44299310,44299359,44299310,44299311,50,-,CGTCCTCGAAGCTGTTTTTCTGGAAGGGAATGGAGGCAGCTGTGTTTACA,"Intron (Arhgap15-203/Arhgap15, intron 12 of 14)",2,43748824,44395953,647130,1,Arhgap15-203,550486,Arhgap15-203;Arhgap15-202;Arhgap15-201,Arhgap15;Arhgap15;Arhgap15,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,72,78,76117,ENSMUSG00000049744,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7523,cg15605223,0.0000393,0.0000115,3.411542078,0.000731639,gain,ns,0.0000257,0.0000196,1.311897064,0.190525526,pos,ns,0.014105299,0.005737588,2.458402084,0.014502263,pos,ns,1.838564215,-0.000529436,0.000197315,-2.683201567,0.007683528,neg,ns,0.42692871,Scml4,Scml4_Intergenic_downstream,10,42988888,42988937,42988888,42988889,50,+,CGGTTTTCATTTGATCCAAAAATGGATCCAAAGCTCTGGTAATCTCATCC,Distal Intergenic,10,42939881,42958721,18841,1,Scml4-205,49007,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,4,268297,ENSMUSG00000044770,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4899,cg10814392,-0.00000135,0.00000831,-0.162193939,0.8712588,loss,ns,0.0000185,0.0000141,1.311861288,0.190537584,pos,ns,-0.000622973,0.004138289,-0.150538756,0.88043748,neg,ns,0.055301478,0.0000587,0.000142315,0.412146922,0.68051659,pos,ns,0.946858575,Zfp513,Zfp513_Exon,5,31200466,31200515,31200514,31200515,50,+,GCTGGGCTGAGGCGTAGGGGCAGCGGCCACAGCGGAACGGCTTCTCTCCG,"Exon (Zfp513-202/Zfp513, exon 3 of 4)",5,31198981,31202303,3323,2,Zfp513-202,1788,Ppm1g-205;Ppm1g-201;Ppm1g-206;Ppm1g-203;Ppm1g-204;Snx17-201;Snx17-202;Snx17-204;Snx17-210;Snx17-208;Snx17-207;Snx17-211;Snx17-209;Snx17-206;Snx17-203;Zfp513-202;Zfp513-201;Zfp513-205;Zfp513-207;Zfp513-203;Zfp513-204;Zfp513-208;Zfp513-206,Ppm1g;Ppm1g;Ppm1g;Ppm1g;Ppm1g;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Zfp513;Zfp513;Zfp513;Zfp513;Zfp513;Zfp513;Zfp513;Zfp513,0;0;4568;0;0;0;0;0;0;0;0;5623;0;0;0;0;0;0;-180;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,15,15,101023,ENSMUSG00000043059,conserved gene and region,5,31200414,31200657,244,*,244,21,0.68442623,0.738115817,0.086065574,6.37E-15,CpGisland,TRUE,NA,NRS
24879,cg02337941,0.0000304,0.00000484,6.284586983,1.11E-09,gain,yes,0.0000108,0.00000823,1.311782732,0.190564064,pos,ns,0.002654608,0.002409697,1.101635674,0.271474679,pos,ns,0.566270672,-0.0000405,0.0000829,-0.488913686,0.625248517,neg,ns,0.07043155,Pitx2,Pitx2_Intron,3,129208036,129208085,129208036,129208037,50,-,CGAAAGCTTATTCGTGAGCAGGAATATACTAATGGAACAATCTGATGTCT,"Intron (Pitx2-207/Pitx2, intron 3 of 4)",3,129199878,129219590,19713,1,Pitx2-207,8158,Pitx2-207;Pitx2-201;Pitx2-203;Pitx2-205;Pitx2-204,Pitx2;Pitx2;Pitx2;Pitx2;Pitx2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,24,18741,ENSMUSG00000028023,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
11144,cg25028183,0.00000122,0.00000574,0.211970772,0.832269134,gain,ns,0.0000128,0.00000976,1.311737216,0.190579408,pos,ns,0.010141614,0.002858972,3.547294556,0.000449379,pos,ns,3.347387105,-0.000349414,0.0000983,-3.553847978,0.000438759,neg,ns,0.885521972,Hsfy2,Hsfy2_Intergenic_upstream,1,56745114,56745163,56745162,56745163,50,-,AAACAAAATGGTTATTCAAATGGGTCCCCTACTAATTTTACAAAGATGCG,Distal Intergenic,1,56636044,56637435,1392,2,Hsfy2-201,-107728,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,71066,ENSMUSG00000045336,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5104,cg23292715,-0.000025,0.00000954,-2.619019682,0.009251784,loss,ns,0.0000213,0.0000162,1.311734066,0.19058047,pos,ns,-0.009798552,0.004749663,-2.062999575,0.039945159,neg,ns,1.398535851,0.000045,0.000163341,0.275719394,0.7829473,pos,ns,0.783731611,Dnm1,Dnm1_Exon,2,32333131,32333180,32333179,32333180,50,+,TGGGCTCTTTGAGCTTCTGCACCTGCTTTTTCACTGTGGCTTCAAAAGCG,"Exon (Dnm1-201/Dnm1, exon 10 of 23)",2,32308471,32353263,44793,2,Dnm1-204,20083,Dnm1-204;Dnm1-209;Dnm1-202;Dnm1-201;Dnm1-203;Dnm1-205;Dnm1-214;Dnm1-216;Dnm1-217,Dnm1;Dnm1;Dnm1;Dnm1;Dnm1;Dnm1;Dnm1;Dnm1;Dnm1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,16,13429,ENSMUSG00000026825,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25872,cg25859808,0.0000191,0.0000108,1.76835116,0.077985677,gain,ns,0.0000241,0.0000183,1.311679644,0.190598818,pos,ns,-0.001763413,0.005372326,-0.328240153,0.742951686,neg,ns,0.129039427,0.000318562,0.000184754,1.724249507,0.08565968,pos,ns,0.813586364,Morc4,Morc4_Intron,X,139835449,139835498,139835449,139835450,50,-,CGTCCGGAGCTGGGCAACCATGTCCGAGAGACAGTGCTCCTGAAAATTCA,"Intron (Morc4-201/Morc4, intron 13 of 15)",20,139821632,139871654,50023,2,Morc4-201,36156,Morc4-201;Morc4-204;Morc4-202;Morc4-210;Morc4-208,Morc4;Morc4;Morc4;Morc4;Morc4,0;0;0;0;19440,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,7,75746,ENSMUSG00000031434,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27795,cg06369774,0.00000388,0.00000383,1.015111205,0.31084443,gain,ns,0.00000853,0.0000065,1.311452927,0.190675266,pos,ns,0.005300041,0.001904458,2.782964965,0.005716946,pos,ns,2.242835926,-0.000155034,0.0000655,-2.367144207,0.018539956,neg,ns,0.908556722,Gpatch2,Gpatch2_Intron,1,187287141,187287190,187287141,187287142,50,-,CGTTAAGATTTTTATTGCCAGCCACACATACAGAGCTGCAAATTGCCTTG,"Intron (Gpatch2-207/Gpatch2, intron 5 of 10)",1,187215511,187349640,134130,1,Gpatch2-207,71630,Gpatch2-207;Gpatch2-202;Gpatch2-204;Gpatch2-209;Gpatch2-206;Gpatch2-208,Gpatch2;Gpatch2;Gpatch2;Gpatch2;Gpatch2;Gpatch2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,10,67769,ENSMUSG00000039210,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18902,cg24570290,0.00000695,0.0000053,1.312782478,0.190227269,gain,ns,0.0000118,0.000009,1.311395732,0.190694555,pos,ns,0.00196446,0.002636539,0.745090311,0.456781636,pos,ns,0.340291364,-0.0000955,0.0000907,-1.053579321,0.292896049,neg,ns,0.944725589,Dach1,Dach1_Intron,14,97868390,97868439,97868390,97868391,50,+,CGTGTTTCCTAAACGCTTTTGAAAACATTACTGTGCGCAGGCATAAAATT,"Intron (Dach1-201/Dach1, intron 6 of 10)",14,97786853,98169543,382691,2,Dach1-201,301104,Dach1-201;Dach1-202;Dach1-203,Dach1;Dach1;Dach1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,76,13134,ENSMUSG00000055639,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20337,cg04576672,0.0000525,0.00000484,10.85432299,1.77E-23,gain,yes,0.0000108,0.00000822,1.311363839,0.190705312,pos,ns,0.005190672,0.00240807,2.15553195,0.031889657,pos,ns,1.496350155,-0.0000651,0.0000828,-0.78600245,0.432466427,neg,ns,0.061275397,Hoxc5,Hoxc5_Intron,15,103009491,103009540,103009539,103009540,50,+,TCATTTTGTCTGTCCTGGATTGGAGCCGTCCCTATAACCATCTAGTTCCG,"Intron (Hoxc5-202/Hoxc5, intron 1 of 1)",15,102967443,103015676,48234,1,Hoxc5-202,42048,Hoxc5-202;Hoxc5-201;Hoxc6-202;Hoxc6-203;Hoxc6-201,Hoxc5;Hoxc5;Hoxc6;Hoxc6;Hoxc6,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,46,134,15424,ENSMUSG00000022485,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
23093,cg19816294,0.0000885,0.00000939,9.428223745,1.01E-18,gain,yes,-0.0000209,0.000016,-1.311337016,0.190714359,neg,ns,0.013281186,0.004674366,2.841280864,0.004790874,pos,ns,2.319585227,-0.000501365,0.000160751,-3.118889383,0.001985843,neg,ns,0.377512698,Rnf220,Rnf220_fiveUTR,4,117288505,117288554,117288505,117288506,50,-,CGAGCCCACGCTGATCACCTTTGTGAAATGTGGGCCGACTGATAACTCAA,5' UTR,4,117271463,117497052,225590,2,Rnf220-201,208498,Rnf220-201;Rnf220-203;Rnf220-212;Rnf220-202;Rnf220-205;Rnf220-209;Rnf220-213;Rnf220-210;Rnf220-206;Rnf220-208,Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,152,66743,ENSMUSG00000028677,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22442,cg16278638,0.000120718,0.0000163,7.392435169,1.35E-12,gain,yes,-0.0000364,0.0000277,-1.311272609,0.190736084,neg,ns,0.010330951,0.008127568,1.271099985,0.204646027,pos,ns,0.688996682,-0.000490265,0.000279506,-1.754039089,0.080411932,neg,ns,0.410177853,Fam222a,Fam222a_Intron,5,114571712,114571761,114571712,114571713,50,+,CGCTTTATTGTGTTAACCCATTTGCGTGTCAAGAGCTATTGGGCGCTTTC,"Intron (Fam222a-201/Fam222a, intron 1 of 2)",5,114568016,114613220,45205,1,Fam222a-201,3696,Fam222a-201;Fam222a-202,Fam222a;Fam222a,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,16,433940,ENSMUSG00000041930,conserved gene and region,5,114571569,114571856,288,*,288,32,0.645833333,1.067531565,0.111111111,3.20E-26,CpGisland,TRUE,U3,Pr-B
21478,cg15054595,-0.0000524,0.00000738,-7.101101034,8.50E-12,loss,yes,-0.0000164,0.0000125,-1.311238504,0.190747589,neg,ns,-0.003676259,0.003670858,-1.001471362,0.317380046,neg,ns,0.498420381,-0.000154626,0.000126241,-1.224856173,0.221559311,neg,ns,0.877795811,Actl11,Actl11_threeUTR,9,107932392,107932441,107932392,107932393,50,+,CGACAAGTGCAATTACCCTTGATTGCCAGCTTGTTGCCATGGCAATTTCA,3' UTR,9,107928469,107932461,3993,1,Actl11-201,3923,Actl11-201;Camkv-201;Camkv-202;Camkv-203;Camkv-205,Actl11;Camkv;Camkv;Camkv;Camkv,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,2,67722,ENSMUSG00000066368,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6270,cg01631669,0.0000198,0.00000673,2.946820203,0.003454125,gain,ns,-0.000015,0.0000114,-1.311170645,0.190770482,neg,ns,-0.000544206,0.003348497,-0.1625226,0.871000219,neg,ns,0.059981736,0.000068,0.000115155,0.590897082,0.555019944,pos,ns,0.875511699,Tshz3,Tshz3_Intron,7,36700821,36700870,36700821,36700822,50,+,CGCTCAGCCATAAAAAAAGAAAAGTTGTTTTGCCAGCTTCATTAGTGTTC,"Intron (Tshz3-201/Tshz3, intron 1 of 1)",7,36698118,36773553,75436,1,Tshz3-201,2703,Tshz3-201;Tshz3-202,Tshz3;Tshz3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,58,243931,ENSMUSG00000021217,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20994,cg02364050,-0.00000405,0.00000135,-2.994935455,0.00296626,loss,ns,-0.00000301,0.0000023,-1.310909719,0.190858526,neg,ns,-0.001238687,0.000673296,-1.839736253,0.066762962,neg,ns,1.175464401,0.00000856,0.0000232,0.369749472,0.711821627,pos,ns,0.96648975,Tanc2,Tanc2_Exon,11,105919976,105920025,105920024,105920025,50,-,CTACTAAGGCCCTGGAGCTGAAACCGAAATCTTATGAAGCTTACTATGCG,"Exon (Tanc2-202/Tanc2, exon 25 of 26)",11,105589991,105929304,339314,1,Tanc2-202,329985,Tanc2-202;Tanc2-204;Tanc2-201;Tanc2-205,Tanc2;Tanc2;Tanc2;Tanc2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,15,20,77097,ENSMUSG00000053580,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21534,cg15223146,0.00000243,0.00000255,0.955813353,0.339911302,gain,ns,0.00000567,0.00000433,1.310891149,0.190864793,pos,ns,0.002206492,0.001267883,1.740296175,0.082799345,pos,ns,1.081973099,-0.0000962,0.0000436,-2.206995546,0.028046924,neg,ns,0.940374562,Zfhx3,Zfhx3_Intron,8,108113655,108113704,108113655,108113656,50,-,CGTTTATAATTAAATTGTAATTTAGGCCAGTGATTTATCGTTTTCTCAAT,"Intron (Zfhx3-204/Zfhx3, intron 1 of 15)",8,107942644,108961630,1018987,1,Zfhx3-204,171011,Zfhx3-204;Zfhx3-207,Zfhx3;Zfhx3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,114,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3738,cg00208586,0.0000346,0.00000702,4.923795217,0.00000138,gain,yes,0.0000156,0.0000119,1.310488679,0.19100066,pos,ns,-0.007246127,0.003495611,-2.072921271,0.039005583,neg,ns,1.408873227,0.000224551,0.000120214,1.867930808,0.062715038,pos,ns,0.851095855,Gm47909,Gm47909_Intergenic_upstream,14,25180100,25180149,25180100,25180101,50,-,CGTGAACTGTATTTAAAATGTAAATAAAAAAAGGCTTTTAGGAGATTTAA,Distal Intergenic,14,25089939,25090406,468,2,Gm47909-201,-89743,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,17,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15091,cg04795355,-0.000014,0.00000365,-3.84914786,0.000143965,loss,ns,0.00000812,0.0000062,1.310323298,0.19105651,pos,ns,-0.002559391,0.00181541,-1.409814116,0.159597042,neg,ns,0.796975161,0.0000406,0.0000624,0.650758019,0.515684741,pos,ns,0.904503031,Gm8345,Gm8345_Intergenic_upstream,13,79050893,79050942,79050941,79050942,50,-,CTGTGATGATTAGCAGTTTTTTCTGCTAACTCTAGTCTACTGTAGTTCCG,Distal Intergenic,13,78953088,78954792,1705,2,Gm8345-201,-96150,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,13,666883,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8430,cg02960107,0.0000812,0.00000673,12.06882171,9.40E-28,gain,yes,-0.000015,0.0000114,-1.310288503,0.191068263,neg,ns,-0.000486428,0.003349646,-0.145217731,0.884633339,neg,ns,0.053236697,0.000128552,0.000115194,1.115956379,0.265305085,pos,ns,0.133589001,Zeb2,Zeb2_fiveUTR,2,45113126,45113175,45113126,45113127,50,-,CGCCACCTATCTTTGTGGGGAGGGATAATTGAAGCGCCCTGAGCGTGAGC,5' UTR,2,44983632,45117395,133764,2,Zeb2-212,4220,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219;Zeb2-211;Zeb2-210;Zeb2-205;Zeb2-223;Zeb2-217;Zeb2-225;Zeb2-204;Zeb2-206;Zeb2-230,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;-3050;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,15,158,24136,ENSMUSG00000026872,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
16646,cg14752229,-0.0000044,0.00000238,-1.849637383,0.065317487,loss,ns,0.0000053,0.00000404,1.310185773,0.191102963,pos,ns,-0.001735227,0.001184586,-1.464837915,0.143978554,neg,ns,0.841702192,0.00008,0.0000407,1.962819961,0.050561067,pos,ns,0.942147694,Bcas3,Bcas3_Intron,11,85814474,85814523,85814522,85814523,50,-,ATTTTTACATCATTAGATTAGCCCCGACTCCTGGCCACTTGTTGTCTGCG,"Intron (Bcas3-205/Bcas3, intron 26 of 27)",11,85353167,85826058,472892,1,Bcas3-205,461307,Bcas3-205;Bcas3-206;Bcas3-201;Bcas3-202;Bcas3-216;Bcas3-212;Bcas3-203;Bcas3-207;Bcas3-215,Bcas3;Bcas3;Bcas3;Bcas3;Bcas3;Bcas3;Bcas3;Bcas3;Bcas3,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,24,192197,ENSMUSG00000059439,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26053,cg08771706,-0.0000186,0.0000106,-1.759921148,0.079407419,loss,ns,0.0000236,0.000018,1.310172661,0.191107392,pos,ns,-0.003710898,0.005273376,-0.703704492,0.482145036,neg,ns,0.3168223,0.000318842,0.000181351,1.758151205,0.079708598,pos,ns,0.302510827,Cdkn1c,Cdkn1c_Intergenic_downstream,7,143445105,143445154,143445105,143445106,50,-,CGATTTTCTGTGATGCGTGGGCTGTCGGGACATCTGTCTTCTATACCTAA,Distal Intergenic,7,143458722,143459311,590,2,Cdkn1c-204,14206,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,5,12577,ENSMUSG00000037664,mapped to different genes,7,143445084,143445200,117,*,117,9,0.504273504,1.210344828,0.076923077,0.00000341,CpGisland,TRUE,U13,Hc-P
17633,cg25587386,-0.00000379,0.00000266,-1.426174619,0.154824193,loss,ns,0.00000592,0.00000452,1.309777249,0.191241002,pos,ns,0.001669891,0.001324031,1.261216798,0.208179028,pos,ns,0.681563023,-0.000115774,0.0000455,-2.542612511,0.011488816,neg,ns,0.925729419,Elavl2,Elavl2_Exon,4,91311575,91311624,91311575,91311576,50,-,CGGTCCAAGGCTCTGCTGCCCACGAACCACTTCTAAGCAGAGAAGCCACA,"Exon (Elavl2-207/Elavl2, exon 2 of 7)",4,91250763,91372034,121272,2,Elavl2-204,60410,Elavl2-204;Elavl2-201;Elavl2-207;Elavl2-208;Elavl2-202;Elavl2-209;Elavl2-206;Elavl2-203;Elavl2-205;Elavl2-215;Elavl2-216;Elavl2-212;Elavl2-214,Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,31,15569,ENSMUSG00000008489,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27218,cg06663166,0.000000557,0.00000359,0.154920752,0.876984611,gain,ns,-0.000008,0.00000611,-1.309746817,0.191251287,neg,ns,-0.004415496,0.001788807,-2.468403405,0.014111015,neg,ns,1.850441733,-0.0000678,0.0000615,-1.102421876,0.271133429,neg,ns,0.912627968,Rc3h1,Rc3h1_Exon,1,160930176,160930225,160930176,160930177,50,+,CGACGAAACAATTCGAAAGCCCATCAGTTTGGGTTGTGGCCATACTGTCT,"Exon (Rc3h1-202/Rc3h1, exon 2 of 20)",1,160906418,160974978,68561,1,Rc3h1-202,23758,Rc3h1-202;Rc3h1-204;Rc3h1-201,Rc3h1;Rc3h1;Rc3h1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,8,381305,ENSMUSG00000040423,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22984,cg03503112,-0.0000118,0.0000125,-0.937325528,0.349320799,loss,ns,0.0000279,0.0000213,1.309518064,0.191328617,pos,ns,0.002672399,0.006241563,0.428161837,0.668830614,pos,ns,0.174683857,-0.00017569,0.000214647,-0.818508731,0.413695492,neg,ns,0.709022092,Gm47912,Gm47912_Intron,13,116575620,116575669,116575620,116575621,50,+,CGGTGAAATGGCTCTCTGTCGGCCTTGGTATTGATTCAGAGTGTGTCAAA,"Intron (Gm47914-201/Gm47914-201, intron 1 of 1)",13,116361198,116361694,497,2,Gm47912-201,-213926,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,8,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16529,cg23675208,0.000068,0.00000682,9.971821614,1.70E-20,gain,yes,-0.0000152,0.0000116,-1.309468918,0.191345234,neg,ns,0.001292999,0.003395251,0.380825938,0.703593249,pos,ns,0.152678336,0.0000134,0.000116762,0.114447575,0.908957091,pos,ns,0.09313585,Btbd11,Btbd11_Exon,10,85387511,85387560,85387559,85387560,50,+,CCGGCACAACAGCTTTGACACTGTCAACACTGCCCTGGTGGAAGACTCCG,Promoter (<=1kb),10,85386814,85660292,273479,1,Btbd11-203,697,Btbd11-203;Btbd11-201,Btbd11;Btbd11,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,13,13,74007,ENSMUSG00000020042,conserved gene and region,10,85387046,85387614,569,*,569,49,0.65202109,0.810258646,0.086115993,4.08E-34,CpGisland,TRUE,U3,Pr-B
116,cg18897599,-0.00000172,0.00000494,-0.348854869,0.727435089,loss,ns,0.000011,0.00000839,1.309354034,0.191384082,pos,ns,0.001103989,0.002459438,0.448878593,0.653832862,pos,ns,0.184533256,-0.000108463,0.0000846,-1.282376696,0.200668629,neg,ns,0.875470834,Grk2,Grk2_Exon,19,4287616,4287665,4287616,4287617,50,-,CGCTGCCACTGGGTCAGGAAGGGGTTGCCCATCTTGGACATGTAGCCATG,"Exon (Grk2-201/Grk2, exon 20 of 22)",19,4286001,4305955,19955,2,Grk2-201,18290,Ankrd13d-201;Ankrd13d-202;Ankrd13d-205;Ankrd13d-204;Grk2-201;Grk2-203;Grk2-202;Grk2-209;Grk2-204;Grk2-207;Grk2-205;Grk2-208;Grk2-206,Ankrd13d;Ankrd13d;Ankrd13d;Ankrd13d;Grk2;Grk2;Grk2;Grk2;Grk2;Grk2;Grk2;Grk2;Grk2,-4481;-4479;-4479;-4583;0;0;0;0;1738;1729;2818;4146;17543,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,5,110355,ENSMUSG00000024858,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4440,cg23340478,0.000000539,0.00000892,0.060496737,0.951798996,gain,ns,0.0000198,0.0000151,1.309322391,0.191394783,pos,ns,0.017151183,0.00443713,3.865377156,0.000135132,pos,ns,3.869241765,-0.000242576,0.000152593,-1.589696906,0.112922426,neg,ns,0.136407036,Barhl1,Barhl1_fiveUTR,2,28916614,28916663,28916662,28916663,50,+,GATTAAAAGAGACACCGAATTAATTACAGCACAGACCCAACTGTTTACCG,Promoter (<=1kb),2,28908969,28916668,7700,2,Barhl1-202,5,Barhl1-201;Barhl1-204;Barhl1-203;Barhl1-202;Barhl1-205,Barhl1;Barhl1;Barhl1;Barhl1;Barhl1,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,6,54422,ENSMUSG00000026805,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
9631,cg01947709,-1.43E-08,0.000017,-0.000836902,0.999332787,loss,ns,0.0000379,0.000029,1.309146266,0.191454353,pos,ns,0.01842546,0.008483829,2.171832961,0.030626122,pos,ns,1.513907986,-0.000246476,0.000291758,-0.844796832,0.39887579,neg,ns,0.700749383,Tenm3,Tenm3_Intergenic_upstream,8,49628154,49628203,49628154,49628155,50,-,CGCGTCAAACTAAGAAATCTCTCTGAACTTGTCGAATTAAAAGTCATCTC,Distal Intergenic,8,48646261,48843951,197691,2,Tenm3-207,-784252,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,39,23965,ENSMUSG00000031561,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17362,cg16104428,-0.00000209,0.00000193,-1.080036619,0.280965425,loss,ns,-0.00000429,0.00000328,-1.309026739,0.191494788,neg,ns,-0.000723925,0.000960973,-0.753325444,0.45182611,neg,ns,0.345028676,0.00000783,0.000033,0.236923154,0.812872892,pos,ns,0.956800754,Agap1,Agap1_Intron,1,89848792,89848841,89848840,89848841,50,-,TGATTATCTTAATGTTAAATATGTCCGGCAGCAATTACTGTGACCTCCCG,"Intron (Agap1-201/Agap1, intron 16 of 17)",1,89454806,89897617,442812,1,Agap1-201,393986,Agap1-201;Agap1-204;Agap1-202,Agap1;Agap1;Agap1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,29,347722,ENSMUSG00000055013,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10419,cg13468491,0.00000194,0.00000645,0.30100733,0.763610695,gain,ns,0.0000143,0.000011,1.309000834,0.191503552,pos,ns,0.006181217,0.003208793,1.926337409,0.05497635,pos,ns,1.259824099,-0.000160311,0.00011035,-1.45274843,0.147305056,neg,ns,0.188362917,Prdm6,Prdm6_Intron,18,53480153,53480202,53480201,53480202,50,+,CCTAATGGCTCAAACCCTGATTTACTCACTGTAATAAGGGCAGGAGGTCG,"Intron (Prdm6-201/Prdm6, intron 2 of 6)",18,53464516,53575857,111342,1,Prdm6-201,15637,Prdm6-201;Prdm6-203,Prdm6;Prdm6,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,16,225518,ENSMUSG00000069378,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22823,cg14153842,0.00000834,0.00000246,3.383287089,0.000808202,gain,ns,-0.00000548,0.00000419,-1.309000756,0.191503579,neg,ns,0.002261954,0.001226445,1.844317241,0.066090923,pos,ns,1.179858185,-0.0000749,0.0000422,-1.776170019,0.07668569,neg,ns,0.03592261,Faah,Faah_Intron,4,115979551,115979600,115979551,115979552,50,-,CGTTTTTAGAGCCGGTAATTGACTCCTTTCAGTTGATAATTCATGGCTTG,"Intron (Faah-202/Faah, intron 13 of 14)",4,115967145,116017675,50531,2,Faah-202,38075,Faah-202,Faah,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,20,14073,ENSMUSG00000034171,mapped to different genes,4,115979435,115979564,130,*,130,14,0.707692308,0.870396939,0.107692308,1.85E-11,CpGisland,TRUE,NA,NRS
18562,cg26225511,0.0000541,0.0000126,4.27707797,0.0000253,gain,ns,-0.0000281,0.0000215,-1.308933744,0.191526252,neg,ns,0.009501594,0.006293163,1.509827981,0.132105885,pos,ns,0.879077835,-0.000255751,0.000216421,-1.181728659,0.238219097,neg,ns,0.16146507,Arid2,Arid2_Exon,15,96289103,96289152,96289151,96289152,50,+,CCCAGAAGTTGTTCTAACGCTGCCTTTGCTTTAAAACAGTATTACTTGCG,"Exon (Arid2-202/Arid2, exon 3 of 5)",15,96287518,96352038,64521,1,Arid2-202,1585,Arid2-202;Arid2-201,Arid2;Arid2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,9,77044,ENSMUSG00000033237,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27341,cg00967479,-0.0000568,0.00000991,-5.727208473,2.41E-08,loss,yes,0.000022,0.0000168,1.308906615,0.191535431,pos,ns,-0.002148832,0.004933807,-0.43553224,0.663479236,neg,ns,0.178172664,0.000188775,0.000169673,1.112581018,0.26675043,pos,ns,0.812862543,Cdh22,Cdh22_Intron,2,165114895,165114944,165114943,165114944,50,+,GTGGGCAATTAGGCAGAACTTTGTTTGCACTGCCTCGGAAAATGAAACCG,"Intron (Cdh22-201/Cdh22, intron 11 of 11)",2,165111507,165234853,123347,2,Cdh22-201,119909,Cdh22-201;Cdh22-202,Cdh22;Cdh22,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,23,104010,ENSMUSG00000053166,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
10231,cg23595572,-0.00000219,0.00000314,-0.697271534,0.486155461,loss,ns,-0.00000698,0.00000533,-1.308839092,0.19155828,neg,ns,-0.004877938,0.001562413,-3.122054939,0.001965264,neg,ns,2.706578998,0.000154165,0.0000537,2.86919361,0.004397811,pos,ns,0.88102635,Tcf7,Tcf7_Exon,11,52255141,52255190,52255141,52255142,50,-,CGAGCACGGCATTTCTTAGGCGAGCCAGGGTCTGCTCACAGCCATGCCAG,"Exon (Tcf7-203/Tcf7, exon 9 of 9)",11,52252371,52282571,30201,2,Tcf7-201,27381,Tcf7-201;Tcf7-202;Tcf7-203,Tcf7;Tcf7;Tcf7,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,8,21414,ENSMUSG00000000782,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18219,cg20114360,0.00000379,0.00000318,1.1894376,0.235177731,gain,ns,-0.00000708,0.00000541,-1.308700018,0.191605347,neg,ns,-0.002196047,0.001584099,-1.386306078,0.166649711,neg,ns,0.778195436,0.0000863,0.0000545,1.584500228,0.114099493,pos,ns,0.934009609,Ap3b1,Ap3b1_Intron,13,94511589,94511638,94511637,94511638,50,+,TGTTCATTTGGTGCCCATCAGCCCAGCCTCATCTCTCATACGGCACCTCG,"Intron (Ap3b1-201/Ap3b1, intron 22 of 26)",13,94358960,94566317,207358,1,Ap3b1-201,152629,Ap3b1-201;Ap3b1-205,Ap3b1;Ap3b1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,55,11774,ENSMUSG00000021686,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1224,cg08179056,0.0000647,0.0000123,5.242431562,0.000000294,gain,yes,-0.0000274,0.000021,-1.308620562,0.191632241,neg,ns,0.025321565,0.006140257,4.123860733,0.0000479,pos,ns,4.319691933,-0.000662321,0.000211163,-3.136541363,0.001873577,neg,ns,0.264279765,Bcor,Bcor_Intron,X,12073816,12073865,12073864,12073865,50,-,TGCATGCAAATCAATATGGCAATTACCATCTAAAAGCTCGCCCAGCCCCG,"Intron (Bcor-202/Bcor, intron 1 of 14)",20,12036740,12080553,43814,2,Bcor-202,6688,Bcor-202;Bcor-203;Bcor-204;Bcor-206;Bcor-201;Bcor-207;Bcor-205,Bcor;Bcor;Bcor;Bcor;Bcor;Bcor;Bcor,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,56,74,71458,ENSMUSG00000040363,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18631,cg16091716,0.000250238,0.000019,13.16666837,9.44E-32,gain,yes,-0.0000423,0.0000323,-1.308568564,0.191649843,neg,ns,0.01793321,0.009459175,1.895853442,0.058909258,pos,ns,1.229816451,-0.000161087,0.0003253,-0.495194909,0.620813357,neg,ns,0.455091587,Hoxb3,Hoxb3_Exon,11,96345434,96345483,96345482,96345483,50,+,TCTGAGTCCAGGCCTGGATTTATTAAGAAACGATGCATTCAATTTCGGCG,"Exon (Hoxb3os-201/Hoxb3os-201, exon 2 of 2)",11,96323326,96347930,24605,1,Hoxb3-202,22108,Hoxb3-202;Hoxb3-203;Hoxb3-204;Hoxb3-201,Hoxb3;Hoxb3;Hoxb3;Hoxb3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,19,15410,ENSMUSG00000048763,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
12510,cg15863527,0.0000219,0.00000358,6.118671834,2.84E-09,gain,yes,-0.00000795,0.00000608,-1.308308957,0.19173774,neg,ns,0.008054048,0.001780069,4.524570867,0.00000863,pos,ns,5.063854731,-0.000224677,0.0000612,-3.670212462,0.000285253,neg,ns,0.041662881,Klf3,Klf3_Intron,5,64812201,64812250,64812201,64812202,50,+,CGAAGTACAGGGTGTGGGCAGAATCTTATCTGAAGCCATGTCCTGTTTGG,"Intron (Klf3-201/Klf3, intron 1 of 5)",5,64803388,64832901,29514,1,Klf3-201,8813,Klf3-201;Klf3-208;Klf3-209;Klf3-202;Klf3-204;Klf3-205;Klf3-203,Klf3;Klf3;Klf3;Klf3;Klf3;Klf3;Klf3,0;0;0;0;-90;-134;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,4,16599,ENSMUSG00000029178,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17809,cg23684482,0.0000803,0.0000168,4.781691785,0.00000269,gain,ns,-0.0000373,0.0000285,-1.308166925,0.191785841,neg,ns,0.017470608,0.008354236,2.091227547,0.037321457,pos,ns,1.428041415,-0.000648582,0.000287301,-2.257497226,0.024672583,neg,ns,0.429593747,Ambra1,Ambra1_Exon,2,91811704,91811753,91811704,91811705,50,+,CGTGACTTGTCCTTCACAAGGGAGTTCTGGGTTAGTTTAAAATGTTCTGT,"Exon (Ambra1-208/Ambra1, exon 1 of 3)",2,91730134,91918849,188716,1,Ambra1-203,81570,Ambra1-203;Ambra1-205;Ambra1-206;Ambra1-209;Ambra1-204;Ambra1-202;Ambra1-201;Ambra1-207;Ambra1-208,Ambra1;Ambra1;Ambra1;Ambra1;Ambra1;Ambra1;Ambra1;Ambra1;Ambra1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,12,228361,ENSMUSG00000040506,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2492,cg01032183,-0.00000835,0.00000534,-1.564050598,0.118825907,loss,ns,-0.0000119,0.00000906,-1.308110588,0.191804923,neg,ns,-0.008421442,0.002655555,-3.171254686,0.001669703,neg,ns,2.777360867,0.000263977,0.0000913,2.89054656,0.004117204,pos,ns,0.879912098,Pkhd1,Pkhd1_Intergenic_downstream,1,19983331,19983380,19983331,19983332,50,-,CGGTCCCTAAAGTCTCTAGCGAAAAGGTAGAAATGAACTAATTTATTAGT,Distal Intergenic,1,20374722,20409448,34727,2,Pkhd1-203,426117,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,25,241035,ENSMUSG00000043760,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27737,cg27144953,0.00000974,0.00000556,1.750793652,0.080970599,gain,ns,-0.0000124,0.00000945,-1.308072454,0.191817841,neg,ns,-0.007994018,0.002768915,-2.887057734,0.004161906,neg,ns,2.380707689,0.000256659,0.0000952,2.695357581,0.007415011,pos,ns,0.817784881,Rbbp8nl,Rbbp8nl_Intergenic_upstream,2,180306662,180306711,180306710,180306711,50,-,ACAGTTACATAAACGATGATAACACTTCATAAACATTTTTCTAACATGCG,Distal Intergenic,2,180277646,180289879,12234,2,Rbbp8nl-201,-16832,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,271887,ENSMUSG00000038980,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6185,cg06467581,-0.00000169,0.00000118,-1.434235849,0.15251292,loss,ns,0.00000261,0.000002,1.307991802,0.191845162,pos,ns,0.001148298,0.000585534,1.961112183,0.050760879,pos,ns,1.294470865,-0.0000203,0.0000201,-1.006810103,0.31481125,neg,ns,0.065740045,Pura,Pura_Exon,18,36287331,36287380,36287331,36287332,50,+,CGCAGGAGCTGGCCTCCAAGCGGGTGGACATCCAGAACAAGCGCTTCTAC,"Exon (Pura-201/Pura, exon 2 of 2)",18,36281097,36292535,11439,1,Pura-201,6234,Pura-201,Pura,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,13,19,19290,ENSMUSG00000043991,conserved gene and region,18,36286687,36288029,1343,*,1343,129,0.68652271,0.823041768,0.096053611,4.14E-95,CpGisland,TRUE,U1,Pr-A
19367,cg26295579,-0.0000048,0.00000251,-1.911003514,0.056926266,loss,ns,0.00000558,0.00000427,1.307946149,0.191860629,pos,ns,0.00041307,0.001249515,0.330584527,0.741181653,pos,ns,0.13007534,-0.0000735,0.000043,-1.711188271,0.088046652,neg,ns,0.945861439,Cdh8,Cdh8_Exon,8,99111628,99111677,99111676,99111677,50,-,TGTATACAAACATATTCAGCATTAACAACATGGAGATATTTACTTGGCCG,"Exon (Cdh8-207/Cdh8, exon 9 of 13)",8,99024471,99416427,391957,2,Cdh8-207,304750,Cdh8-207;Cdh8-204;Cdh8-201;Cdh8-206;Cdh8-203,Cdh8;Cdh8;Cdh8;Cdh8;Cdh8,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,16,12564,ENSMUSG00000036510,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6475,cg05942016,-0.000000181,0.00000106,-0.170873473,0.864434729,loss,ns,-0.00000236,0.0000018,-1.307702505,0.191943187,neg,ns,-0.000279039,0.000528294,-0.528187614,0.597747017,neg,ns,0.223482582,0.00000715,0.0000182,0.393596016,0.694149894,pos,ns,0.968004465,Rc3h2,Rc3h2_Exon,2,37398241,37398290,37398289,37398290,50,+,TACTTTTCAAGCTCTTCCTGAGAATGGGCAAATGTACAATTTGTTCCTCG,"Exon (Rc3h2-202/Rc3h2, exon 10 of 22)",2,37370069,37422903,52835,2,Rc3h2-202,24613,Rc3h2-202;Rc3h2-201;Rc3h2-203;Rc3h2-205;Rc3h2-209,Rc3h2;Rc3h2;Rc3h2;Rc3h2;Rc3h2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,10,319817,ENSMUSG00000075376,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9147,cg11705934,-0.0000372,0.00000924,-4.020778895,0.0000729,loss,ns,-0.0000205,0.0000157,-1.307660804,0.19195732,neg,ns,-0.003212372,0.004599385,-0.698435202,0.485428668,neg,ns,0.313874579,-0.0000364,0.000158172,-0.230320409,0.817994717,neg,ns,0.683864612,Gm13469,Gm13469_Intergenic_upstream,2,47134078,47134127,47134126,47134127,50,-,TAGTTTTAAAACCTTTACCCCTGCTGTTTGAAAAATATTTCTCATTTTCG,Distal Intergenic,2,46406220,46406569,350,2,Gm13469-201,-727558,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,20,27,383690,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9848,cg26632088,-0.00000373,0.00000205,-1.817457052,0.070112456,loss,ns,0.00000456,0.00000348,1.307569425,0.191988292,pos,ns,0.001192391,0.001020806,1.168087844,0.24366889,pos,ns,0.613199916,-0.0000663,0.0000351,-1.887984906,0.059961701,neg,ns,0.954805921,Gm7172,Gm7172_Intergenic_downstream,12,51106585,51106634,51106585,51106586,50,+,CGGGAGGATTTTATTTCCAAATATAAAATTCATGCCATGCTCACAGGCAG,Distal Intergenic,12,51133551,51134702,1152,2,Gm7172-201,28068,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,3,636070,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14683,cg02967973,0.000111939,0.00000905,12.36596755,7.98E-29,gain,yes,-0.0000201,0.0000154,-1.307339838,0.192066125,neg,ns,0.013667538,0.004505358,3.033618886,0.002620766,pos,ns,2.581571776,-0.000240203,0.000154939,-1.550306438,0.122088252,neg,ns,0.081467387,Ctnna2,Ctnna2_Exon,6,77243740,77243789,77243740,77243741,50,+,CGCCCCACAACCTGTCCGGCCTGCTGGGCTTGTCCCTGCGCTACAACAGC,"Exon (Lrrtm1-201/Lrrtm1, exon 2 of 3)",6,76881637,77979699,1098063,2,Ctnna2-204,735910,Ctnna2-204;Ctnna2-205;Ctnna2-202;Ctnna2-201;Lrrtm1-201;Lrrtm1-202;Lrrtm1-203;Lrrtm1-204,Ctnna2;Ctnna2;Ctnna2;Ctnna2;Lrrtm1;Lrrtm1;Lrrtm1;Lrrtm1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,16,24,12386,ENSMUSG00000063063,conserved gene and region,6,77243660,77243918,259,*,259,23,0.633204633,0.885930994,0.088803089,1.29E-16,CpGisland,TRUE,U13,Hc-P
24699,cg06873785,-0.00000459,0.00000407,-1.127324742,0.260477013,loss,ns,0.00000905,0.00000692,1.307328603,0.192069935,pos,ns,0.00018657,0.00202706,0.092039643,0.926725991,pos,ns,0.033048656,-0.0000625,0.0000697,-0.896898232,0.370469206,neg,ns,0.904126307,Prmt8,Prmt8_Exon,6,127689859,127689908,127689907,127689908,50,-,TCACACAGCTGTCCCTTAAAATCCAAGTCTACTGTGAAATCGAGGTCTCG,"Exon (Prmt8-201/Prmt8, exon 10 of 10)",6,127689011,127769472,80462,2,Prmt8-201,79564,Prmt8-201,Prmt8,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,381813,ENSMUSG00000030350,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5169,cg08136508,0.0000428,0.0000118,3.64243488,0.000316453,gain,ns,0.0000261,0.00002,1.307274423,0.192088306,pos,ns,-0.000354945,0.005851006,-0.060663871,0.951665996,neg,ns,0.021515448,0.000198013,0.000201216,0.984085633,0.325840829,pos,ns,0.340397216,Prrxl1,Prrxl1_Promoter,14,32598589,32598638,32598637,32598638,50,+,ATAAAGGCTTTCCGCCAGGGAAGCACTTAATAGTGCAGGGGGCCGTAACG,Promoter (<=1kb),14,32599407,32649204,49798,1,Prrxl1-203,-769,Prrxl1-203;Prrxl1-204;Prrxl1-202;Prrxl1-201;Prrxl1-205,Prrxl1;Prrxl1;Prrxl1;Prrxl1;Prrxl1,0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,14,23,107751,ENSMUSG00000041730,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
27684,cg06436715,0.0000133,0.00000494,2.688211254,0.007571824,gain,ns,-0.000011,0.0000084,-1.307272381,0.192088998,neg,ns,-0.001188571,0.002460244,-0.48311118,0.629357811,neg,ns,0.201102373,0.000153831,0.0000846,1.818164501,0.070004005,pos,ns,0.699872327,Akt3,Akt3_Intron,1,177150443,177150492,177150491,177150492,50,-,GCTGTCATTTTTTTCTTCTCCCTATCTGGCAGATGGCAAGTCAACAATCG,"Intron (Akt3-201/Akt3, intron 1 of 12)",1,177020073,177248805,228733,2,Akt3-201,98313,Akt3-201;Akt3-203;Akt3-202,Akt3;Akt3;Akt3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,14,23797,ENSMUSG00000019699,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21231,cg12503970,-0.00000547,0.00000184,-2.979107759,0.003119293,loss,ns,0.00000408,0.00000312,1.307112627,0.192143175,pos,ns,-0.0000803,0.000913743,-0.087855874,0.930047954,neg,ns,0.031494658,-0.0000047,0.0000314,-0.149565788,0.881204459,neg,ns,0.953336421,Chtf8,Chtf8_Exon,8,106886927,106886976,106886975,106886976,50,-,GTGTAATGTAGGTCTCCCAGGAGGTTTCCAGCTAATCCAGTGCTGTAGCG,"Exon (Chtf8-204/Chtf8, exon 3 of 4)",8,106883863,106893593,9731,2,Chtf8-204,6617,Chtf8-204;Chtf8-201;Chtf8-202;Chtf8-203;Gm50241-201;Gm50241-202;Has3-201;Has3-202,Chtf8;Chtf8;Chtf8;Chtf8;Gm50241;Gm50241;Has3;Has3,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,214987,ENSMUSG00000046691,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23905,cg15294537,-0.00000882,0.0000113,-0.777322012,0.437561588,loss,ns,0.0000252,0.0000193,1.307017577,0.192175415,pos,ns,0.010117229,0.005645349,1.792135382,0.074086358,pos,ns,1.130261755,-0.00025271,0.000194143,-1.301669975,0.193995684,neg,ns,0.682756302,Col9a2,Col9a2_Exon,4,121045488,121045537,121045536,121045537,50,-,CCAAGGGAGATGTGGGTGCCTCTGGAGAGCAAGGCATCCCTGGACCACCG,"Exon (Col9a2-201/Col9a2, exon 13 of 32)",4,121039385,121055322,15938,1,Col9a2-201,6103,Col9a2-201;Col9a2-203,Col9a2;Col9a2,0;5740,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,12840,ENSMUSG00000028626,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15456,cg06382378,0.0000712,0.0000121,5.903570198,9.33E-09,gain,yes,-0.0000268,0.0000205,-1.306883156,0.192221015,neg,ns,0.018858293,0.006000411,3.142833407,0.001834998,pos,ns,2.736364504,-0.000687212,0.000206354,-3.330261545,0.000972424,neg,ns,0.344215314,Srsf5,Srsf5_Exon,12,80948338,80948387,80948338,80948339,50,-,CGTGATCTGATCCCTAAGTTGAGACCTGTCTTCCTGTAACGCTTCCGAAT,"Exon (Srsf5-207/Srsf5, exon 5 of 7)",12,80945504,80950507,5004,1,Srsf5-201,2834,Slc10a1-202;Slc10a1-201;Srsf5-201;Srsf5-204;Srsf5-207;Srsf5-202;Srsf5-203;Srsf5-212;Srsf5-211;Srsf5-206;Srsf5-208;Srsf5-210;Srsf5-205;Srsf5-209,Slc10a1;Slc10a1;Srsf5;Srsf5;Srsf5;Srsf5;Srsf5;Srsf5;Srsf5;Srsf5;Srsf5;Srsf5;Srsf5;Srsf5,20318;19692;0;0;0;0;0;0;2804;0;2768;2759;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,10,20384,ENSMUSG00000021134,conserved gene but different region,12,80948271,80948449,179,*,179,13,0.480446927,1.283507998,0.072625698,1.77E-08,CpGisland,TRUE,NA,NRS
13351,cg21995650,0.0000674,0.0000114,5.899250698,9.55E-09,gain,yes,0.0000254,0.0000194,1.30679785,0.192249958,pos,ns,0.014543805,0.005684447,2.558526116,0.010986635,pos,ns,1.959135319,-0.000278485,0.000195488,-1.424565121,0.155288845,neg,ns,0.267551084,Nr2f2,Nr2f2_Intron,7,70281695,70281744,70281695,70281696,50,-,CGTTTTACTGTCAGGGCTGGTCGAGGCTGTGGCTTCATTTCATATTCCAT,"Intron (Gm29683-202/Gm29683-202, intron 1 of 3)",7,70353074,70355237,2164,2,Nr2f2-203,73542,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,69,11819,ENSMUSG00000030551,mapped to different genes,7,70281536,70281717,182,*,182,17,0.642857143,0.909465021,0.093406593,9.09E-13,CpGisland,TRUE,U13,Hc-P
14567,cg24806294,0.0000574,0.00000909,6.311978338,9.52E-10,gain,yes,0.0000202,0.0000154,1.306796292,0.192250487,pos,ns,-0.001643787,0.004523287,-0.363405325,0.716549814,neg,ns,0.144753612,0.000235464,0.000155555,1.513697643,0.131121388,pos,ns,0.679328852,Scrt1,Scrt1_threeUTR,15,76516255,76516304,76516303,76516304,50,-,CGGGGAGCTGGTGCTATTGTGCTTAGGAAGGAGGTCTGTCCGTCCGTCCG,3' UTR,15,76516203,76522499,6297,2,Scrt1-201,6195,Dgat1-201;Dgat1-210;Dgat1-212;Dgat1-211;Dgat1-209;Scrt1-201;Scrt1-202,Dgat1;Dgat1;Dgat1;Dgat1;Dgat1;Scrt1;Scrt1,-4304;-4575;-4581;-4302;-4429;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,6,170729,ENSMUSG00000048385,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
20974,cg10026253,-0.0000149,0.00000232,-6.421505563,5.06E-10,loss,yes,0.00000515,0.00000394,1.306758589,0.19226328,pos,ns,-0.001821447,0.001155096,-1.576879433,0.11584316,neg,ns,0.936129605,0.0000796,0.0000397,2.005053714,0.045826383,pos,ns,0.947196562,Spry2,Spry2_threeUTR,14,105892227,105892276,105892275,105892276,50,-,GTAAGGCAAAATACAATCTAAAAACATACTGATTGATTCACATTCTTCCG,3' UTR,14,105891947,105896819,4873,2,Spry2-201,4543,Spry2-201,Spry2,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,12,24064,ENSMUSG00000022114,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20076,cg13748673,0.00000209,0.00000425,0.491489783,0.623427878,gain,ns,-0.00000943,0.00000721,-1.306737509,0.192270433,neg,ns,-0.005768204,0.002113571,-2.729127351,0.006712879,neg,ns,2.173091159,0.000117315,0.0000727,1.614011439,0.107542334,pos,ns,0.901776031,Stim1,Stim1_Exon,7,102431001,102431050,102431001,102431002,50,+,CGGCGAATGCGCAGCCTTTCATCTGGACAGTCTTTCAGTTCTGAAGGCTA,"Exon (Stim1-202/Stim1, exon 11 of 12)",7,102267806,102437318,169513,1,Stim1-201,163195,Stim1-201;Stim1-202;Stim1-209;Stim1-206;Stim1-207;Stim1-205;Stim1-204,Stim1;Stim1;Stim1;Stim1;Stim1;Stim1;Stim1,0;0;0;5028;0;4449;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,6,20866,ENSMUSG00000030987,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11111,cg03856216,-0.0000118,0.00000643,-1.841471553,0.066507728,loss,ns,0.0000143,0.0000109,1.306721526,0.192275856,pos,ns,0.00897615,0.003200863,2.804290822,0.005360956,pos,ns,2.270757748,-0.000158728,0.000110077,-1.441968922,0.150320619,neg,ns,0.837889029,Tgfbi,Tgfbi_Exon,13,56635649,56635698,56635649,56635650,50,-,CGGCTAAAGTCTCTCCAAGGTGACAAGCTGGAAGTCAGCTTGGTAAGTGT,"Exon (Tgfbi-204/Tgfbi, exon 13 of 17)",13,56609523,56639562,30040,1,Tgfbi-204,26126,Tgfbi-204;Tgfbi-201;Tgfbi-203;Tgfbi-205,Tgfbi;Tgfbi;Tgfbi;Tgfbi,0;0;9547;4436,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,21810,ENSMUSG00000035493,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16714,cg04767553,0.0000319,0.00000569,5.617549785,4.31E-08,gain,yes,0.0000126,0.00000966,1.306651097,0.192299757,pos,ns,0.005159053,0.002830003,1.822984565,0.069268778,pos,ns,1.159462477,-0.000099,0.0000973,-1.017210069,0.309846725,neg,ns,0.083668749,Gpatch2l,Gpatch2l_Intergenic_upstream,12,86216865,86216914,86216913,86216914,50,+,ACAATTCTCTCAATTAACGATAGGCAGAAATTAATTTTTCCCCTCGATCG,Distal Intergenic,12,86241858,86291784,49927,1,Gpatch2l-204,-24944,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,13,17,70373,ENSMUSG00000021254,conserved gene but different region,12,86216882,86217003,122,*,122,9,0.532786885,1.082840237,0.073770492,0.0000048,CpGisland,TRUE,U13,Hc-P
14814,cg23629098,-0.0000036,0.0000139,-0.258285601,0.796357891,loss,ns,-0.0000309,0.0000237,-1.306574911,0.192325613,neg,ns,0.014607141,0.006935866,2.106029947,0.036005527,pos,ns,1.443630832,-0.000712242,0.000238524,-2.986041098,0.003051387,neg,ns,0.649761741,Myo18a,Myo18a_Intergenic_downstream,11,77867848,77867897,77867896,77867897,50,+,TAATCATATGTTCATATCCAAGCCAATTTGAATCAATTTGGCAGGGAGCG,Distal Intergenic,11,77857479,77865076,7598,1,Myo18a-216,10369,Myo18a-208;Myo18a-209;Myo18a-207;Myo18a-201;Myo18a-203;Myo18a-222;Myo18a-223;Myo18a-211;Myo18a-205;Myo18a-210;Myo18a-224;Myo18a-202;Myo18a-220;Myo18a-221;Myo18a-215;Myo18a-216,Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,18,360013,ENSMUSG00000000631,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8408,cg12376071,-0.0000789,0.0000132,-5.986441529,5.93E-09,loss,yes,0.0000292,0.0000224,1.306365816,0.19239659,pos,ns,-0.00508214,0.00655813,-0.774937353,0.438967366,neg,ns,0.357567765,0.0000313,0.000225534,0.13868477,0.8897893,pos,ns,0.806797261,Zeb2,Zeb2_Intron,2,45100616,45100665,45100616,45100617,50,+,CGTTCATACAAATAACATAAAACTTAATTATTGGATGATTTGGCAGAGGA,"Intron (Zeb2-212/Zeb2, intron 3 of 10)",2,44983632,45117395,133764,2,Zeb2-212,16730,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219;Zeb2-211;Zeb2-210;Zeb2-205;Zeb2-223;Zeb2-217,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;9411,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13531,cg27140373,-0.00000311,0.00000297,-1.048490391,0.295229471,loss,ns,-0.00000659,0.00000504,-1.306333232,0.192407652,neg,ns,0.000396126,0.001477821,0.268047373,0.788841124,pos,ns,0.103010457,-0.0000223,0.0000508,-0.437966736,0.661715404,neg,ns,0.917275844,Gm10172,Gm10172_Intergenic_downstream,7,71190238,71190287,71190238,71190239,50,+,CGCGCTTAATTGGCCGTATTGTCTCCAAAAGTTAATTGGTTACTTAGTCC,Distal Intergenic,7,71332363,71332921,559,2,Gm10172-201,142634,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,31,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23018,cg18678463,-0.00000315,0.00000169,-1.857752154,0.064152229,loss,ns,0.00000376,0.00000288,1.306300422,0.192418792,pos,ns,0.002085185,0.000842883,2.473872348,0.013901055,pos,ns,1.856952227,-0.0000305,0.000029,-1.051733962,0.293740758,neg,ns,0.063405958,Mettl23,Mettl23_Exon,11,116852857,116852906,116852905,116852906,50,-,TGCGGTAGGTCAGGTTGTCCACCTTGAGGGAGGTCATACCCTCCACATCG,"Exon (Srsf2-201/Srsf2, exon 1 of 3)",11,116848901,116854263,5363,1,Mettl23-205,3956,Mettl23-201;Mettl23-206;Mettl23-208;Mettl23-203;Mettl23-204;Mettl23-205;Mfsd11-209;Mfsd11-204;Mfsd11-207;Mfsd11-208;Mfsd11-205;Mfsd11-201;Mfsd11-211;Mfsd11-203;Mfsd11-202;Mfsd11-212;Srsf2-201;Srsf2-203;Srsf2-204;Srsf2-202;Srsf2-206;Srsf2-205,Mettl23;Mettl23;Mettl23;Mettl23;Mettl23;Mettl23;Mfsd11;Mfsd11;Mfsd11;Mfsd11;Mfsd11;Mfsd11;Mfsd11;Mfsd11;Mfsd11;Mfsd11;Srsf2;Srsf2;Srsf2;Srsf2;Srsf2;Srsf2,9579;0;9184;9182;9182;0;0;-389;-568;-856;-873;-914;-923;-989;-1120;-1172;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,4,74319,ENSMUSG00000090266,conserved gene but different region,11,116852905,116853970,1066,*,1066,113,0.675422139,0.932337461,0.106003752,1.13E-88,CpGisland,TRUE,U1,Pr-A
14577,cg25048586,0.00000427,0.00000384,1.111760895,0.267102431,gain,ns,-0.00000851,0.00000652,-1.306005759,0.192518856,neg,ns,-0.003708434,0.001909714,-1.941878779,0.053057462,neg,ns,1.275253525,-0.00000138,0.0000657,-0.021023247,0.983240636,neg,ns,0.898561396,Plekhg3,Plekhg3_Exon,12,76576099,76576148,76576099,76576100,50,+,CGCCCAGGAGCCTGAGAGCCTTCTGCCACCCTCTGTGCTGGACCAGGCCA,"Exon (Plekhg3-201/Plekhg3, exon 18 of 19)",12,76533380,76579042,45663,1,Plekhg3-201,42719,Plekhg3-201;Plekhg3-207;Plekhg3-208;Plekhg3-205;Sptb-201,Plekhg3;Plekhg3;Plekhg3;Plekhg3;Sptb,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,263406,ENSMUSG00000052609,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1871,cg06793460,-0.000037,0.00000915,-4.048952599,0.0000651,loss,ns,0.0000203,0.0000155,1.30592756,0.192545418,pos,ns,-0.010366865,0.004551668,-2.277596881,0.023431293,neg,ns,1.630203738,0.000373276,0.000156531,2.384670631,0.017695388,pos,ns,0.783813393,Psat1,Psat1_Intergenic_downstream,19,15791745,15791794,15791793,15791794,50,+,TCGGCCTTTGAGGATAAACCTGTGATGGCTTGTTGTGCCTCTCTGAATCG,Distal Intergenic,19,15905130,15909712,4583,2,Psat1-204,117918,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,14,17,107272,ENSMUSG00000024640,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3136,cg07378032,-0.0000541,0.0000105,-5.124369186,0.000000526,loss,yes,-0.0000234,0.0000179,-1.305784868,0.192593893,neg,ns,-0.022989123,0.005249872,-4.378987316,0.0000163,neg,ns,4.787112901,0.000312756,0.000180543,1.732313441,0.084212401,pos,ns,0.716262693,Gm11879,Gm11879_Intergenic_downstream,4,22947049,22947098,22947049,22947050,50,+,CGAGGCAGCGAACCAGACTGCCTTCACAGAGCTGTCCAAAAAGAGGGAGC,Distal Intergenic,4,22704057,22704758,702,1,Gm11879-201,242992,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,19,19,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21158,cg10993031,0.0000985,0.0000161,6.111343082,2.96E-09,gain,yes,0.0000358,0.0000274,1.3057841,0.192594154,pos,ns,-0.01222043,0.008021211,-1.523514368,0.128649518,neg,ns,0.890591836,0.000544496,0.000275849,1.973892837,0.049281531,pos,ns,0.391766115,Gm17304,Gm17304_Exon,5,106575108,106575157,106575156,106575157,50,+,TGTTTTCTGCAATCAGAACCAACAAGGTGTTGAGCGATCAGTCATAAACG,"Exon (Gm29464-201/Gm29464-201, exon 1 of 1)",5,106609098,106609201,104,1,Gm17304-201,-33941,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,35,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27115,cg17718386,0.0000289,0.00000329,8.781446302,1.11E-16,gain,yes,-0.0000073,0.00000559,-1.305578099,0.192664153,neg,ns,0.003158331,0.001638597,1.927460897,0.05483571,pos,ns,1.260936529,-0.0000505,0.0000564,-0.895904909,0.370998696,neg,ns,0.051986743,Lrrc7,Lrrc7_fiveUTR,3,158561836,158561885,158561836,158561837,50,-,CGACGACACCAGCTGCAGCTGCTTCAAAGTGTGAAAAATGTCAAGGAGAT,Promoter (<=1kb),3,158082895,158562221,479327,2,Lrrc7-205,336,Lrrc7-205;Lrrc7-204;Lrrc7-207;Lrrc7-201;Lrrc7-202;Lrrc7-203,Lrrc7;Lrrc7;Lrrc7;Lrrc7;Lrrc7;Lrrc7,0;0;0;0;-491;-500,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,10,242274,ENSMUSG00000028176,conserved gene but different region,3,158561491,158561840,350,*,350,35,0.728571429,0.753660637,0.1,6.55E-27,CpGisland,TRUE,U3,Pr-B
912,cg19480146,0.0000222,0.00000283,7.846762338,6.98E-14,gain,yes,-0.00000628,0.00000481,-1.305393331,0.192726952,neg,ns,0.003751254,0.001410523,2.659476961,0.008232941,pos,ns,2.084445007,-0.0000354,0.0000485,-0.729704288,0.466121968,neg,ns,0.114025302,Gdf6,Gdf6_Exon,4,9844815,9844864,9844863,9844864,50,-,AGCTGGGCATCAATGCCAGCTTTTTCCAGTCTTCCAAGTCGGCTAATACG,Promoter (<=1kb),4,9844372,9862345,17974,1,Gdf6-201,443,Gdf6-201,Gdf6,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,11,242316,ENSMUSG00000051279,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
16470,cg15614766,0.00000334,0.00000179,1.865684722,0.063029856,gain,ns,-0.00000398,0.00000305,-1.30528683,0.192763157,neg,ns,0.000943425,0.000892293,1.057304165,0.291196006,pos,ns,0.535814586,-0.0000126,0.0000307,-0.409013196,0.682812404,neg,ns,0.94613987,Ylpm1,Ylpm1_threeUTR,12,85069700,85069749,85069748,85069749,50,-,GAGAAGATCACAGATGAAAGTGGTCACCTGGCTGAAAAAGCCCTCAATCG,3' UTR,12,84996321,85070492,74172,1,Ylpm1-207,73379,Ylpm1-207;Ylpm1-201;Ylpm1-202;Ylpm1-203;Ylpm1-206;Ylpm1-205,Ylpm1;Ylpm1;Ylpm1;Ylpm1;Ylpm1;Ylpm1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,13,56531,ENSMUSG00000021244,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27848,cg06641021,-0.00000312,0.00000438,-0.710983539,0.477629027,loss,ns,0.00000972,0.00000745,1.304919944,0.192887918,pos,ns,0.004301582,0.002182377,1.97105347,0.049607006,pos,ns,1.304456983,-0.0000996,0.0000751,-1.326517008,0.185644887,neg,ns,0.906972007,Ush2a,Ush2a_Intron,1,188457434,188457483,188457482,188457483,50,-,CAAATCATGCAGACTTCAAGGAGCTTTAATTGATATACTAGAATGTGACG,"Intron (Ush2a-201/Ush2a, intron 19 of 70)",1,188263034,188965041,702008,1,Ush2a-201,194400,Ush2a-201,Ush2a,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,33,36,22283,ENSMUSG00000026609,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17037,cg25921461,0.000109982,0.000018,6.101169022,3.14E-09,gain,yes,-0.00004,0.0000306,-1.30484769,0.192912495,neg,ns,0.023968914,0.00897192,2.671547796,0.007949139,pos,ns,2.099679901,-0.00037689,0.000308544,-1.221513399,0.222819807,neg,ns,0.119726598,Mllt3,Mllt3_Exon,4,88031552,88031601,88031600,88031601,50,-,CAAGTGGAAGACGACTTTCTCCACAAAGTGCTGTATGTTACTGTGCTCCG,"Exon (Mllt3-201/Mllt3, exon 2 of 11)",4,87769925,88033364,263440,2,Mllt3-201,1763,Mllt3-201;Mllt3-203;Mllt3-205;Mllt3-206,Mllt3;Mllt3;Mllt3;Mllt3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,13,70122,ENSMUSG00000028496,conserved gene but different region,4,88031274,88031627,354,*,354,40,0.641242938,1.102803738,0.11299435,5.51E-33,CpGisland,TRUE,NA,NRS
11434,cg19337494,0.0000132,0.00000271,4.857480577,0.00000189,gain,ns,-0.00000601,0.0000046,-1.304732279,0.192951757,neg,ns,0.003896204,0.001348773,2.888702296,0.00414078,pos,ns,2.382917873,-0.000124588,0.0000464,-2.686008223,0.007620765,neg,ns,0.072446366,Ccdc33,Ccdc33_Intron,9,58113036,58113085,58113036,58113037,50,+,CGAGTTAAGAGAGAGATTAATATATTCAATCCGCTCCAGGGTAATTGAGG,"Intron (Stra6-210/Stra6, intron 1 of 4)",9,58028678,58118823,90146,2,Ccdc33-203,5738,Ccdc33-203;Ccdc33-210;Ccdc33-208;Ccdc33-202;Stra6-210;Stra6-208;Stra6-203,Ccdc33;Ccdc33;Ccdc33;Ccdc33;Stra6;Stra6;Stra6,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,8,382077,ENSMUSG00000037716,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
27773,cg02980058,0.00000485,0.00000699,0.693972689,0.488219032,gain,ns,0.0000155,0.0000119,1.304720633,0.192955719,pos,ns,-0.005015265,0.003477758,-1.442097348,0.150284416,neg,ns,0.823086053,0.000189314,0.0001196,1.58289208,0.114465704,pos,ns,0.880051292,Rrp15,Rrp15_Intergenic_upstream,1,186808678,186808727,186808726,186808727,50,+,CTCGTTCATCATTTCAAACAGCTACATACTCTGCCTGCTAATTTCTTCCG,Distal Intergenic,1,186720978,186749358,28381,2,Rrp15-201,-59320,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,11,67223,ENSMUSG00000001305,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23588,cg23923649,0.000126114,0.0000143,8.807411256,9.26E-17,gain,yes,-0.0000317,0.0000243,-1.304703179,0.192961657,neg,ns,0.012561289,0.007126765,1.762551298,0.078961582,pos,ns,1.102584158,-0.000347845,0.000245089,-1.419260685,0.156827734,neg,ns,0.117430075,Hs6st3,Hs6st3_Exon,14,119138441,119138490,119138489,119138490,50,-,GCTGACGCCGGTGCTCACTCTCCTCTTCGTGGTCATCATGTACCAGTACG,Promoter (<=1kb),14,119138341,119869815,731475,1,Hs6st3-201,100,Hs6st3-201,Hs6st3,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,5,50787,ENSMUSG00000053465,conserved gene and region,14,119137599,119138920,1322,*,1322,145,0.705748865,0.880920212,0.1096823,5.90E-116,CpGisland,TRUE,U3,Pr-B
3547,cg18919816,0.000109561,0.0000121,9.044057921,1.69E-17,gain,yes,-0.0000268,0.0000206,-1.304637465,0.192984016,neg,ns,0.015450631,0.006029333,2.562577105,0.01086197,pos,ns,1.964091421,-0.000489689,0.000207348,-2.361676218,0.018810605,neg,ns,0.528581877,Agap3,Agap3_Intron,5,24485091,24485140,24485139,24485140,50,-,TGGGAGTGGAGATTGCATTTCAGTTGCCATTTGCATTCCCAATCAATCCG,"Intron (Agap3-201/Agap3, intron 9 of 17)",5,24452177,24502047,49871,1,Agap3-201,32914,Agap3-201;Agap3-206;Agap3-204;Agap3-205;Agap3-202;Agap3-203,Agap3;Agap3;Agap3;Agap3;Agap3;Agap3,0;32884;32757;10877;0;4919,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,13,213990,ENSMUSG00000023353,conserved gene and region,5,24485139,24485323,185,*,185,19,0.708108108,0.819347319,0.102702703,4.95E-15,CpGisland,TRUE,NA,NRS
18033,cg19057367,-0.00000156,0.00000327,-0.477558102,0.633301291,loss,ns,0.00000724,0.00000555,1.30461097,0.192993031,pos,ns,0.000412419,0.001626313,0.253591443,0.79997931,pos,ns,0.096921245,-0.00000463,0.0000559,-0.082844386,0.934028742,neg,ns,0.893519086,Pola1,Pola1_Intron,X,93377404,93377453,93377404,93377405,50,-,CGACAGCGATTAAGTTATTTGTTTAGTTTTTTAGATTCAGCAGTAATTGC,"Intron (Pola1-201/Pola1, intron 35 of 36)",20,93304767,93632155,327389,2,Pola1-201,254702,Pola1-201,Pola1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,59,62,18968,ENSMUSG00000006678,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27374,cg00791863,-0.00000155,0.00000173,-0.895811537,0.371048493,loss,ns,0.00000384,0.00000294,1.304537723,0.193017957,pos,ns,0.000582483,0.000861962,0.675764048,0.499694255,pos,ns,0.301295644,0.00000155,0.0000296,0.052442248,0.958210088,pos,ns,0.960784165,Zmynd8,Zmynd8_Exon,2,165846168,165846217,165846168,165846169,50,-,CGGTACAACATCAACAGGGTCTGTGGTGAGTGGCTGCTTCATATAGTAAA,"Exon (Zmynd8-205/Zmynd8, exon 3 of 22)",2,165784152,165858173,74022,2,Zmynd8-205,11956,Zmynd8-205;Zmynd8-221;Zmynd8-203;Zmynd8-220;Zmynd8-201;Zmynd8-206;Zmynd8-218;Zmynd8-202;Zmynd8-219;Zmynd8-204;Zmynd8-215;Zmynd8-209;Zmynd8-211;Zmynd8-210,Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,12,228880,ENSMUSG00000039671,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24548,cg20656650,-0.0000134,0.00000456,-2.935515463,0.003578919,loss,ns,0.0000101,0.00000775,1.304395478,0.193066368,pos,ns,-0.002628829,0.002271025,-1.157551807,0.247938081,neg,ns,0.605656765,-0.000129195,0.0000781,-1.654220041,0.099094946,neg,ns,0.846950465,Dyrk4,Dyrk4_Exon,6,126892124,126892173,126892172,126892173,50,+,TGTTTTTGTGATCCAAGCACTTGGCCACCTGTCCAAAGGACCCCTTCCCG,"Exon (Dyrk4-202/Dyrk4, exon 7 of 15)",6,126876020,126921839,45820,2,Dyrk4-202,29666,Dyrk4-202;Dyrk4-201,Dyrk4;Dyrk4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,101320,ENSMUSG00000030345,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15766,cg17687173,-0.000021,0.00000742,-2.836653974,0.004859033,loss,ns,-0.0000164,0.0000126,-1.303951797,0.193217425,neg,ns,-0.009978268,0.003690969,-2.703427711,0.007241451,neg,ns,2.140174426,0.0000368,0.000126932,0.290063839,0.771961327,pos,ns,0.857614677,Dpf3,Dpf3_Exon,12,83269505,83269554,83269505,83269506,50,-,CGTCCTCATCAAAGCCGTGGAAAGTTGACGTGTCACTTTCTGACGTGGAA,"Exon (Dpf3-203/Dpf3, exon 7 of 7)",12,83213745,83350895,137151,2,Dpf3-204,81341,Dpf3-204;Dpf3-207;Dpf3-202;Dpf3-203;Dpf3-201;Dpf3-206;Dpf3-205,Dpf3;Dpf3;Dpf3;Dpf3;Dpf3;Dpf3;Dpf3,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,16,70127,ENSMUSG00000021221,conserved gene and region,12,83269462,83269588,127,*,127,13,0.582677165,1.205989774,0.102362205,2.30E-10,CpGisland,TRUE,U11,Tr-P
12348,cg10699593,-0.00000361,0.00000373,-0.967781359,0.333907995,loss,ns,0.00000826,0.00000633,1.303809173,0.193266002,pos,ns,0.000926932,0.001855866,0.499460838,0.617809057,pos,ns,0.20914573,-0.0000564,0.0000638,-0.883090826,0.377871498,neg,ns,0.911328733,Fer,Fer_Exon,17,63981600,63981649,63981600,63981601,50,+,CGAGAGAGTCATGGGAAACCTGGTGAATATGTCCTTTCTGTATATTCTGA,"Exon (Fer-203/Fer, exon 11 of 15)",17,63864015,64038588,174574,1,Fer-203,117585,Fer-203;Fer-204;Fer-201;Fer-202,Fer;Fer;Fer;Fer,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,14158,ENSMUSG00000000127,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4789,cg22798637,0.0000123,0.00000574,2.145271052,0.032707828,gain,ns,0.0000127,0.00000975,1.303717712,0.193297158,pos,ns,0.007053525,0.002856908,2.468936935,0.014090409,pos,ns,1.851076386,-0.000188899,0.0000982,-1.922659463,0.055438876,neg,ns,0.880386995,Cpa4,Cpa4_Intron,6,30580754,30580803,30580754,30580755,50,-,CGATAAATAGATGGTGCCCTTAGGAACATTTGATCTCTGAATTATCTTAA,"Intron (Cpa4-201/Cpa4, intron 5 of 10)",6,30568369,30592418,24050,1,Cpa4-201,12385,Cpa4-201,Cpa4,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,71791,ENSMUSG00000039070,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13833,cg09882658,0.0000184,0.00000366,5.025068447,0.000000852,gain,yes,0.0000081,0.00000622,1.303604378,0.19333577,pos,ns,0.004021736,0.00182081,2.208762541,0.027922433,pos,ns,1.554046744,-0.000119898,0.0000626,-1.914763525,0.056442856,neg,ns,0.070199309,Six1,Six1_Intron,12,73052066,73052115,73052066,73052067,50,+,CGGGTCATTACGGTACTGCTGGTCTCTAATCAATCCTAATGCGATGGCAA,"Intron (Six1-203/Six1, intron 1 of 1)",12,73043531,73053887,10357,2,Six1-203,1772,Six1-201;Six1-203,Six1;Six1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,18,20471,ENSMUSG00000051367,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
4928,cg12699211,-0.0000768,0.0000109,-7.028838073,1.33E-11,loss,yes,0.0000242,0.0000186,1.303466667,0.193382695,pos,ns,-0.011004261,0.005441677,-2.022218789,0.044012269,neg,ns,1.35642624,0.000213991,0.000187139,1.143489759,0.253717563,pos,ns,0.892824947,Nfrkb,Nfrkb_threeUTR,9,31419041,31419090,31419041,31419042,50,-,CGTGGTCACAGCCCCCATCATCAAAGGCAACCTTGGAGCCAAGTAAGTAC,3' UTR,9,31386192,31421333,35142,1,Nfrkb-201,32849,Nfrkb-201;Nfrkb-204;Nfrkb-208;Nfrkb-202,Nfrkb;Nfrkb;Nfrkb;Nfrkb,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,4,235134,ENSMUSG00000042185,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15693,cg16047215,0.0000122,0.00000287,4.247834647,0.0000286,gain,ns,0.00000636,0.00000488,1.303225108,0.193465026,pos,ns,0.002180164,0.001428802,1.525867985,0.128062315,pos,ns,0.892578652,0.0000123,0.0000491,0.249756391,0.802941165,pos,ns,0.033466992,Rnf150,Rnf150_Exon,8,82864362,82864411,82864410,82864411,50,-,CCCTCATCCCCAAGGGCAACTGCACGTACAGGGATAAGATCCGGAACGCG,"Exon (Rnf150-201/Rnf150, exon 1 of 7)",8,82863356,83091268,227913,1,Rnf150-201,1006,Rnf150-201;Rnf150-202;Rnf150-203,Rnf150;Rnf150;Rnf150,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,330812,ENSMUSG00000047747,conserved gene but different region,8,82864386,82864594,209,*,209,17,0.636363636,0.805668934,0.081339713,9.42E-12,CpGisland,TRUE,U3,Pr-B
27488,cg06257308,0.0000144,0.00000303,4.739981122,0.00000326,gain,ns,-0.00000672,0.00000515,-1.303090436,0.193510937,neg,ns,0.001534644,0.00150986,1.016414783,0.310224518,pos,ns,0.508323882,-0.000096,0.0000519,-1.848772567,0.0654427,neg,ns,0.045427558,Pbx1,Pbx1_Exon,1,168431322,168431371,168431322,168431323,50,+,CGCCTCATCCAAACTCTGGTCTGTGATGGTCATAATTTGCTGTAAAATGT,Promoter (<=1kb),1,168119364,168432270,312907,2,Pbx1-208,899,Pbx1-208;Pbx1-205;Pbx1-206;Pbx1-201;Pbx1-202;Pbx1-204;Pbx1-207,Pbx1;Pbx1;Pbx1;Pbx1;Pbx1;Pbx1;Pbx1,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,84,18514,ENSMUSG00000052534,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
23800,cg02714472,-0.00000123,0.00000364,-0.336655588,0.736604333,loss,ns,-0.00000806,0.00000618,-1.303017796,0.193535705,neg,ns,-0.006553948,0.001811659,-3.61765063,0.000346974,neg,ns,3.459703314,0.00019428,0.0000623,3.118324284,0.001989538,pos,ns,0.073706803,Lhx5,Lhx5_Intergenic_upstream,5,120409688,120409737,120409688,120409689,50,-,CGTTCCAGGCCTGCAACCAGATTAGCATATTAATGAGGCTGTAATTTCCC,Distal Intergenic,5,120431699,120441223,9525,1,Lhx5-201,-22011,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,14,16873,ENSMUSG00000029595,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
2817,cg27563539,-0.0000137,0.00000908,-1.505712783,0.133159154,loss,ns,0.0000201,0.0000154,1.302945536,0.193560345,pos,ns,0.016708019,0.004520637,3.695943808,0.000258956,pos,ns,3.586773945,-0.000512279,0.000155464,-3.295154945,0.001097698,neg,ns,0.737964203,Comtd1,Comtd1_Intergenic_upstream,14,21892070,21892119,21892118,21892119,50,+,CAGGAGACAGGGCCTGCATTTTTCTCATTCATGCCAAACTGCTTTGCACG,Distal Intergenic,14,21845855,21848977,3123,2,Comtd1-202,-43093,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,13,69156,ENSMUSG00000021773,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8539,cg01839593,0.000105089,0.0000106,9.882993987,3.35E-20,gain,yes,-0.0000235,0.0000181,-1.302894205,0.19357785,neg,ns,0.000125175,0.005292303,0.023652242,0.981145218,pos,ns,0.008266709,0.0000832,0.000182002,0.45736988,0.647725575,pos,ns,0.380029857,Btrc,Btrc_Intron,19,45317604,45317653,45317604,45317605,50,+,CGGGGCGTCTCCCTACTGAAGAATTATGTTGCATAAAGCAGCCGCCACCA,"Intron (Gm28578-208/Gm28578-208, intron 3 of 6)",19,45363734,45507736,144003,1,Btrc-204,-46081,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,63,98,12234,ENSMUSG00000025217,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12750,cg13278722,0.0000401,0.0000049,8.175152888,7.64E-15,gain,yes,-0.0000109,0.00000833,-1.302820879,0.193602858,neg,ns,0.002544712,0.002440483,1.042708414,0.297895821,pos,ns,0.525935589,-0.0000855,0.0000839,-1.018626708,0.309174522,neg,ns,0.089613492,Phox2b,Phox2b_Exon,5,67096113,67096162,67096161,67096162,50,-,CATACTGCTCTTCACTAAGGCGGCTTTGGCACCGTTGGGTCTTTGGAGCG,"Exon (Phox2b-201/Phox2b, exon 3 of 3)",5,67094399,67099301,4903,2,Phox2b-201,3139,Phox2b-201;Phox2b-202,Phox2b;Phox2b,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,28,18935,ENSMUSG00000012520,conserved gene and region,5,67095943,67096179,237,*,237,23,0.556962025,1.265614117,0.097046414,1.59E-17,CpGisland,TRUE,NA,NRS
1764,cg02507211,0.0000118,0.00000642,1.830837807,0.068084542,gain,ns,0.0000142,0.0000109,1.30279715,0.193610951,pos,ns,-0.001711671,0.003195843,-0.535592931,0.592623949,neg,ns,0.227220802,0.0000309,0.000109905,0.281133326,0.778795691,pos,ns,0.766549968,Hephl1,Hephl1_Exon,9,15074099,15074148,15074147,15074148,50,+,CGAACTCCCAGTTTTTGTTAGGGGCATAATCCCATTCTACTTCTTCAGCG,"Exon (Hephl1-201/Hephl1, exon 12 of 20)",9,15051841,15112108,60268,2,Hephl1-201,37960,Hephl1-201,Hephl1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,244698,ENSMUSG00000031936,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24267,cg20404758,-0.0000199,0.00000567,-3.505343516,0.000523284,loss,ns,-0.0000126,0.00000963,-1.302658031,0.193658405,neg,ns,-0.005435761,0.002822482,-1.92587997,0.055033699,neg,ns,1.259371294,-0.0000807,0.0000971,-0.831760468,0.406184397,neg,ns,0.892322025,Clstn3,Clstn3_Exon,6,124449584,124449633,124449632,124449633,50,+,TCTCCACATCATCCCCCTCCAGGGTGAGCAGGGACTGTGAGGGGTTCACG,"Exon (Clstn3-202/Clstn3, exon 12 of 18)",6,124430759,124462744,31986,2,Clstn3-202,13111,Clstn3-202;Clstn3-201;Clstn3-205,Clstn3;Clstn3;Clstn3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,6,232370,ENSMUSG00000008153,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6301,cg22803055,-0.0000195,0.00000702,-2.779558553,0.005775752,loss,ns,0.0000155,0.0000119,1.302563802,0.193690552,pos,ns,0.007330043,0.003493168,2.098394273,0.036679286,pos,ns,1.435579123,-0.0003531,0.00012013,-2.939322932,0.003536435,neg,ns,0.818976603,Tshz3,Tshz3_threeUTR,7,36773197,36773246,36773245,36773246,50,+,CACACTGCAGCTTTATCTTTAGGCTTATGAAAGGTAACCCGTGGTTACCG,3' UTR,7,36698118,36773553,75436,1,Tshz3-201,75079,Tshz3-201,Tshz3,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,58,243931,ENSMUSG00000021217,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22830,cg01150494,-0.000000845,0.00000129,-0.656157527,0.512209497,loss,ns,-0.00000285,0.00000219,-1.302316558,0.19377492,neg,ns,-0.00053327,0.000640744,-0.832268131,0.40589829,neg,ns,0.391582778,-0.0000177,0.000022,-0.801959508,0.4231907,neg,ns,0.965298769,Cit,Cit_threeUTR,5,115981665,115981714,115981665,115981666,50,-,CGGAAAGAGGACCCTGCTTTACCCACACAGGTTCCTCTGCAGTACAATGA,3' UTR,5,115845644,116006353,160710,1,Cit-212,136021,Cit-212;Cit-201;Cit-202;Cit-203;Cit-213;Cit-216;Cit-204;Cit-205,Cit;Cit;Cit;Cit;Cit;Cit;Cit;Cit,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,9,12704,ENSMUSG00000029516,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17642,cg14619985,0.0000235,0.00000835,2.81402418,0.005205265,gain,ns,-0.0000185,0.0000142,-1.302260206,0.193794153,neg,ns,-0.006102097,0.004157871,-1.467601306,0.143226378,neg,ns,0.843976992,0.0000741,0.000142989,0.518328458,0.604598872,pos,ns,0.175712707,Zic1,Zic1_threeUTR,9,91360742,91360791,91360790,91360791,50,+,CATAAACAAATGGAACAGTTTGACACGCAGATCCAGGCTCGTACTATACG,3' UTR,9,91358058,91365768,7711,2,Zic1-201,4977,Zic1-201;Zic1-202;Zic1-203;Zic4-208,Zic1;Zic1;Zic1;Zic4,0;0;2263;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,10,22771,ENSMUSG00000032368,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
5922,cg02208682,-0.0000759,0.0000128,-5.915588471,8.74E-09,loss,yes,0.0000284,0.0000218,1.302167865,0.193825672,pos,ns,-0.013546751,0.006383769,-2.122061555,0.03462536,neg,ns,1.460605698,0.000334446,0.000219537,1.523412025,0.128675099,pos,ns,0.729128575,Gsn,Gsn_Intron,2,35259850,35259899,35259850,35259851,50,+,CGTGTGTCATATTTCAGCCTGATGTGGTTTGTGAAGTTGGAGACCACAGG,"Intron (Gsn-205/Gsn, intron 1 of 17)",2,35256380,35307890,51511,1,Gsn-205,3470,Gsn-205;Gsn-207;Gsn-206;Gsn-204;Gsn-203,Gsn;Gsn;Gsn;Gsn;Gsn,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,227753,ENSMUSG00000026879,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23279,cg23667730,0.0000118,0.00000517,2.277751185,0.023421979,gain,ns,-0.0000114,0.00000877,-1.301939239,0.193903726,neg,ns,-0.004434571,0.00257074,-1.725017068,0.085521057,neg,ns,1.067926938,0.0000867,0.0000884,0.980178228,0.32776247,pos,ns,0.886720724,Eri3,Eri3_Intron,4,117646541,117646590,117646541,117646542,50,+,CGCTGGAAGCAGCATTTGTAAAAATTAAATCCCTCTTATTAGGAGCTTGG,"Intron (Eri3-201/Eri3, intron 7 of 8)",4,117550365,117674297,123933,1,Eri3-201,96176,Eri3-201;Eri3-206;Eri3-203,Eri3;Eri3;Eri3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,82,97,140546,ENSMUSG00000033423,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9064,cg11612117,0.00000093,0.00000209,0.445820805,0.656037894,gain,ns,0.00000461,0.00000354,1.301889425,0.193920736,pos,ns,0.002740514,0.001038034,2.640099568,0.008707618,pos,ns,2.060100612,-0.0000767,0.0000357,-2.148431274,0.032453938,neg,ns,0.960243673,Gm8863,Gm8863_Intergenic_upstream,9,46756029,46756078,46756077,46756078,50,-,TTGACTAATCAGTTTGGTTAAGTGAAAATCCATAGCAAATGAGTCGACCG,Distal Intergenic,9,46713233,46714158,926,2,Gm8863-201,-41920,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,20,667890,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6679,cg23590681,-0.00000164,0.00000478,-0.343835076,0.731203415,loss,ns,0.0000106,0.00000812,1.301881647,0.193923392,pos,ns,0.005516075,0.002378571,2.319071037,0.021041026,pos,ns,1.676933083,-0.000189827,0.0000818,-2.320656542,0.020954048,neg,ns,0.904921181,Ubr5,Ubr5_Exon,15,37996690,37996739,37996690,37996691,50,+,CGTAATTGAGCTTCAGTAGAATCCATAATACTGACCATCCAGTTCCAAGT,"Exon (Ubr5-201/Ubr5, exon 40 of 59)",15,37967859,38078854,110996,2,Ubr5-201,82115,Ubr5-201;Ubr5-204;Ubr5-209;Ubr5-202,Ubr5;Ubr5;Ubr5;Ubr5,0;0;4556;3388,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,6,70790,ENSMUSG00000037487,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26633,cg19305567,-0.00000121,0.00000114,-1.063144004,0.28854411,loss,ns,0.00000252,0.00000193,1.301833578,0.193939807,pos,ns,0.000349165,0.000566679,0.616160416,0.538240817,pos,ns,0.269023371,-0.0000263,0.0000195,-1.347419704,0.178829079,neg,ns,0.964577196,Pex14,Pex14_Intron,4,149044915,149044964,149044963,149044964,50,+,CTTTGTCTGAAAATGCAGGCGACAGGCAAATCACATATTTAACAGCATCG,"Intron (Pex14-201/Pex14, intron 2 of 8)",4,148960535,149099876,139342,2,Pex14-201,54912,Pex14-201;Pex14-202;Pex14-205;Pex14-203;Pex14-204,Pex14;Pex14;Pex14;Pex14;Pex14,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,41,48,56273,ENSMUSG00000028975,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10170,cg00445879,0.000123204,0.0000111,11.1074825,2.36E-24,gain,yes,-0.0000245,0.0000188,-1.301801906,0.193950623,neg,ns,0.020379544,0.005520585,3.691554966,0.000263273,pos,ns,3.579592872,-0.000354532,0.000189852,-1.867410308,0.062787877,neg,ns,0.212638107,Gm28308,Gm28308_Exon,6,52208363,52208412,52208363,52208364,50,+,CGCCACTGAGGTCCTTATCAGAATAGAAACACGAGGCCCCGTACTCGTAG,"Exon (Hoxa6-201/Hoxa6, exon 1 of 2)",6,52163359,52213339,49981,2,Gm28308-201,4927,Gm28308-201;Hoxa3-201;Hoxa3-203;Hoxa5-201;Hoxa6-201,Gm28308;Hoxa3;Hoxa3;Hoxa5;Hoxa6,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,30,103,,NA,mapped to different genes,6,52208187,52208437,251,*,251,14,0.589641434,0.643589744,0.055776892,0.000000122,CpGisland,TRUE,NA,NRS
21600,cg04567893,-0.00000755,0.00000528,-1.428275025,0.154219416,loss,ns,0.0000117,0.00000898,1.301754594,0.193966782,pos,ns,0.005079648,0.00263016,1.931307576,0.054356458,pos,ns,1.264748848,-0.00022728,0.0000905,-2.512745762,0.012486854,neg,ns,0.880673369,Syt1,Syt1_threeUTR,10,108500166,108500215,108500214,108500215,50,+,AAATAGAACATCTTATTAAAAACATCTAGATATACACAGATTAGGAAACG,3' UTR,10,108497650,109010975,513326,2,Syt1-202,510760,Syt1-202;Syt1-201,Syt1;Syt1,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,5,20979,ENSMUSG00000035864,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9096,cg25337652,-0.0000312,0.00000747,-4.169859753,0.0000396,loss,ns,0.0000165,0.0000127,1.30174921,0.19396862,pos,ns,-0.003043179,0.003720003,-0.818058317,0.413952231,neg,ns,0.383049772,-0.0000204,0.000127931,-0.159355608,0.873492484,neg,ns,0.894372858,Gm4791,Gm4791_Intergenic_upstream,9,46864721,46864770,46864769,46864770,50,-,CAACACTGTTTTGCCCGATGTAATTGCAGTTTCCATATAAATAATTCACG,Distal Intergenic,9,46998741,47003860,5120,1,Gm4791-201,-134020,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,9,18,215467,ENSMUSG00000094893,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8364,cg14116948,0.00000494,0.00000531,0.930038031,0.35307505,gain,ns,0.0000117,0.00000901,1.301730666,0.193974954,pos,ns,0.008306767,0.002641016,3.145292359,0.001820121,pos,ns,2.739899787,-0.000261182,0.0000908,-2.875681759,0.004310758,neg,ns,0.903228768,Supt3,Supt3_Exon,17,45048266,45048315,45048314,45048315,50,-,TGTTTTTCTGTCGCAGAGCACTGCAGCCTGTGGTGTTGAGGCTCACAGCG,"Exon (Supt3-201/Supt3, exon 11 of 12)",17,44777152,45119290,342139,1,Supt3-201,271114,Supt3-201;Supt3-202;Supt3-203,Supt3;Supt3;Supt3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,5,109115,ENSMUSG00000038954,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13676,cg14834740,-0.0000199,0.00000694,-2.865851288,0.004443277,loss,ns,-0.0000153,0.0000118,-1.301502964,0.194052736,neg,ns,-0.002278326,0.003451741,-0.660051313,0.509711008,neg,ns,0.292675987,-0.0000916,0.000118705,-0.77142508,0.441042624,neg,ns,0.928614486,Mctp2,Mctp2_Exon,7,72027234,72027283,72027234,72027235,50,-,CGAGAGCACCCAAATGAATGTAAAATAACTGAAATATTGTGGCATGTTAA,"Exon (1700011C11Rik-201/1700011C11Rik-201, exon 3 of 3)",7,72080413,72110583,30171,2,Mctp2-203,83349,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,5,244049,ENSMUSG00000032776,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9965,cg04319582,-0.00000785,0.00000538,-1.457274901,0.146052719,loss,ns,-0.0000119,0.00000915,-1.301332001,0.194111152,neg,ns,-0.001643091,0.002679728,-0.613155711,0.540222973,neg,ns,0.267426951,0.000136321,0.0000922,1.479253173,0.140088097,pos,ns,0.89844009,Satb1,Satb1_Intron,17,51760772,51760821,51760772,51760773,50,+,CGTATTTGGCTGCCTGATCAGATTAGTGAAAATGTTCTTCAGAACAAGCC,"Intron (Satb1-208/Satb1, intron 9 of 10)",17,51736187,51832672,96486,2,Satb1-208,71851,Satb1-208;Satb1-213;Satb1-204;Satb1-214;Satb1-203;Satb1-211;Satb1-207,Satb1;Satb1;Satb1;Satb1;Satb1;Satb1;Satb1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,28,36,20230,ENSMUSG00000023927,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6054,cg11540631,0.0000129,0.00000311,4.154869644,0.0000421,gain,ns,0.00000687,0.00000528,1.30132585,0.194113254,pos,ns,0.001258024,0.001547665,0.812853294,0.416925989,pos,ns,0.379941032,-0.0000199,0.0000532,-0.374168426,0.708534809,neg,ns,0.021624607,Psd2,Psd2_Intergenic_upstream,18,35920128,35920177,35920128,35920129,50,-,CGCCGTCAGACCCAATTTATCTCGCCGCCAAAGTTTCACAGCCATCTGCT,Distal Intergenic,18,35964830,36014712,49883,1,Psd2-201,-44702,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,24,29,74002,ENSMUSG00000024347,mapped to different genes,18,35919677,35920257,581,*,581,41,0.690189329,0.594514326,0.070567986,4.29E-25,CpGisland,TRUE,U3,Pr-B
12872,cg06185341,-0.0000576,0.0000103,-5.578799704,5.28E-08,loss,yes,0.0000228,0.0000176,1.301241044,0.194142236,pos,ns,-0.0152564,0.005141619,-2.967236653,0.003238781,neg,ns,2.489618417,0.000405169,0.00017682,2.291420085,0.022609553,pos,ns,0.604284933,Gm47010,Gm47010_Intergenic_upstream,14,67611994,67612043,67612042,67612043,50,-,ATTTCATTTGCAATTCTCCTGACTAGAAGTCCTGATTAATAGGGGACACG,Distal Intergenic,14,67588363,67588792,430,2,Gm47010-201,-23251,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,8,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14301,cg00443833,0.00000289,0.00000464,0.622055628,0.534362525,gain,ns,-0.0000103,0.00000789,-1.301136088,0.194178109,neg,ns,-0.001146066,0.002310176,-0.496094449,0.62017932,neg,ns,0.207482719,-0.0000556,0.0000794,-0.699598697,0.484702575,neg,ns,0.889418818,Rps6-ps4,Rps6-ps4_Intergenic_downstream,2,75118380,75118429,75118380,75118381,50,+,CGTTCAAGAAGATCAACAAATGGCTGAAGACAGATTTTTCAGCCAGAGGA,Distal Intergenic,2,75191073,75191822,750,2,Rps6-ps4-201,73393,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,4,105244208,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5739,cg19258425,0.000048,0.00000439,10.93893437,9.05E-24,gain,yes,-0.0000097,0.00000746,-1.300898747,0.194259248,neg,ns,0.005598374,0.002184815,2.562402293,0.010867323,pos,ns,1.963877425,-0.0000765,0.0000751,-1.018566027,0.309203295,neg,ns,0.088278176,Sox2,Sox2_Promoter,3,34648614,34648663,34648662,34648663,50,-,CTCCGTGTAGCGACAACAAGAGAAACAAAACTACCTATTTGTAACGGACG,Promoter (1-2kb),3,34650405,34652461,2057,1,Sox2-201,-1791,Sox2-201,Sox2,0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,7,62,20674,ENSMUSG00000074637,mapped to different genes,3,34648599,34648789,191,*,191,11,0.523560209,0.841746795,0.057591623,0.000003,CpGisland,TRUE,U13,Hc-P
14682,cg17349389,0.000171961,0.0000157,10.98368646,6.34E-24,gain,yes,-0.0000346,0.0000266,-1.300750805,0.194309836,neg,ns,0.018193344,0.007792175,2.334822417,0.020190799,pos,ns,1.694846501,-0.000469097,0.000267972,-1.750541925,0.081014063,neg,ns,0.054948749,Ctnna2,Ctnna2_Exon,6,77243735,77243784,77243735,77243736,50,+,CGAGGCGCCCCACAACCTGTCCGGCCTGCTGGGCTTGTCCCTGCGCTACA,"Exon (Lrrtm1-201/Lrrtm1, exon 2 of 3)",6,76881637,77979699,1098063,2,Ctnna2-204,735915,Ctnna2-204;Ctnna2-205;Ctnna2-202;Ctnna2-201;Lrrtm1-201;Lrrtm1-202;Lrrtm1-203;Lrrtm1-204,Ctnna2;Ctnna2;Ctnna2;Ctnna2;Lrrtm1;Lrrtm1;Lrrtm1;Lrrtm1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,16,24,12386,ENSMUSG00000063063,conserved gene and region,6,77243660,77243918,259,*,259,23,0.633204633,0.885930994,0.088803089,1.29E-16,CpGisland,TRUE,U13,Hc-P
13852,cg00650422,0.0000308,0.00000289,10.66567384,7.87E-23,gain,yes,-0.00000638,0.00000491,-1.300713399,0.194322629,neg,ns,0.004422298,0.001437463,3.076460498,0.002281535,pos,ns,2.641772794,-0.0000847,0.0000494,-1.713956589,0.087536285,neg,ns,0.074419213,Six4,Six4_Exon,12,73112385,73112434,73112385,73112386,50,-,CGGTTCTTGAACCAGTTGCTGACCTGGGTGAGGGAGAGGCCGGTGATCTT,Promoter (<=1kb),12,73099609,73113425,13817,2,Six4-201,991,Six4-201;Six4-202,Six4;Six4,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,8,20474,ENSMUSG00000034460,conserved gene and region,12,73112336,73112699,364,*,364,37,0.648351648,0.970666667,0.101648352,1.06E-28,CpGisland,TRUE,U3,Pr-B
18687,cg26729133,0.0000141,0.00000635,2.224717778,0.026819836,gain,ns,-0.000014,0.0000108,-1.300699053,0.194327535,neg,ns,-0.000204255,0.003160671,-0.064623863,0.948515137,neg,ns,0.022955734,0.00000304,0.000108695,0.027998385,0.977681455,pos,ns,0.611346417,Skap1,Skap1_Intron,11,96738278,96738327,96738326,96738327,50,-,CGGTCAAATTCAGTAGAGGCCATTCCTTTCCCCCAGACAGGAACCAATCG,"Intron (Skap1-204/Skap1, intron 11 of 12)",11,96464593,96758941,294349,1,Skap1-204,273685,Skap1-204;Skap1-203;Skap1-201,Skap1;Skap1;Skap1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,40,46,78473,ENSMUSG00000057058,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5257,cg05373428,0.000160776,0.0000138,11.65701687,2.77E-26,gain,yes,-0.0000305,0.0000234,-1.300609246,0.194358252,neg,ns,0.008578125,0.006864506,1.249634816,0.212375608,pos,ns,0.672895364,0.000177928,0.00023607,0.753711292,0.451594675,pos,ns,0.074204959,Tlx3,Tlx3_Exon,11,33202448,33202497,33202496,33202497,50,-,TTTGGAACCAGGTCTTGACCTGCGCGTCCGTCATTTTGAGGGACTTGGCG,"Exon (Tlx3-201/Tlx3, exon 2 of 3)",11,33200752,33203589,2838,2,Tlx3-201,1092,Tlx3-201,Tlx3,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,20,27140,ENSMUSG00000040610,conserved gene and region,11,33202138,33202672,535,*,535,46,0.639252336,0.904247502,0.085981308,4.93E-32,CpGisland,TRUE,U13,Hc-P
14776,cg27511453,0.00000269,0.00000838,0.321089249,0.748359119,gain,ns,0.0000185,0.0000142,1.300509617,0.194392331,pos,ns,0.002905671,0.004170979,0.696640078,0.486550097,pos,ns,0.312872437,-0.000303033,0.00014344,-2.112615201,0.035432998,neg,ns,0.691764958,Gm31049,Gm31049_Intergenic_upstream,5,77602193,77602242,77602193,77602194,50,+,CGATTTAATTGGGCTTGTGGTAACTGATTCAAGTGAGTACTTTAATTAGG,Distal Intergenic,5,77687376,77689212,1837,1,Gm31049-201,-85134,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,102633147,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13684,cg13645963,0.0000517,0.0000181,2.861440264,0.004503937,gain,ns,-0.0000399,0.0000307,-1.300497449,0.194396494,neg,ns,0.010262875,0.008998704,1.140483746,0.254965159,pos,ns,0.593519162,-0.000210139,0.000309465,-0.679041129,0.497618451,neg,ns,0.255720878,Tle1,Tle1_Intergenic_downstream,4,72049727,72049776,72049727,72049728,50,+,CGTCATGCTGCTTACACAATCTGTTGATCCATTGAACAAATATATGTTGA,Distal Intergenic,4,72118220,72120734,2515,2,Tle1-206,70958,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,20,21885,ENSMUSG00000008305,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
10111,cg12390754,0.000100879,0.0000151,6.681081155,1.10E-10,gain,yes,-0.0000334,0.0000257,-1.300404147,0.194428414,neg,ns,0.020287,0.007515059,2.699513223,0.007325175,pos,ns,2.135181999,-0.00074761,0.000258442,-2.892754426,0.004089141,neg,ns,0.200559773,Gm28308,Gm28308_Intron,6,52190832,52190881,52190880,52190881,50,+,AAAACGGCAAAGAAAATGTTTCACAGGCTATTGACAACGGGAAACACCCG,"Intron (Hoxaas3-203/Hoxaas3-203, intron 1 of 1)",6,52163359,52213339,49981,2,Gm28308-201,22458,Gm28308-201;Hoxa3-201;Hoxa4-201,Gm28308;Hoxa3;Hoxa4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,46,103,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
22470,cg23129938,0.0000807,0.0000135,5.958306791,6.92E-09,gain,yes,-0.0000299,0.000023,-1.30037148,0.194439591,neg,ns,0.023726718,0.006742385,3.519039382,0.000497988,pos,ns,3.302780844,-0.000484785,0.00023187,-2.090759635,0.037363716,neg,ns,0.281356245,Gm12830,Gm12830_Intergenic_upstream,4,114779343,114779392,114779391,114779392,50,+,GCTAATGTTTGATAAATTGCCCAACAGTTGCATTAGCTAATAACTCCCCG,Distal Intergenic,4,114821722,114856166,34445,1,Gm12830-201,-42330,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,12,26,433746,ENSMUSG00000055198,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25330,cg10734250,0.000125417,0.0000181,6.941917072,2.27E-11,gain,yes,-0.0000399,0.0000307,-1.300262703,0.194476812,neg,ns,0.011105224,0.008991923,1.235022174,0.217757477,pos,ns,0.662026925,-0.00022251,0.000309231,-0.719556783,0.472340036,neg,ns,0.401200686,Lmod1,Lmod1_Promoter,1,135324662,135324711,135324662,135324663,50,-,CGCAGCGCTCCAAGATTCCCTGGAATGTCCTCAAGTTTCAAACAGCTCTG,Promoter (<=1kb),1,135324807,135368065,43259,1,Lmod1-201,-145,Lmod1-201,Lmod1,-96,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,1,93689,ENSMUSG00000048096,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3400,cg03957964,0.0000461,0.00000623,7.398467078,1.30E-12,gain,yes,-0.0000138,0.0000106,-1.300242448,0.194483743,neg,ns,0.008362595,0.003101041,2.69670618,0.007385749,pos,ns,2.131605452,-0.000172053,0.000106645,-1.613332068,0.107689838,neg,ns,0.080562341,Kcnma1,Kcnma1_Exon,14,24003796,24003845,24003796,24003797,50,-,CGTCCGCCAGAGCAAGATGATGAAGAGGCCCCCGAAGAAAGTCACCATGG,"Exon (4930519K11Rik-201/4930519K11Rik-201, exon 1 of 4)",14,23292291,24004859,712569,2,Kcnma1-205,1014,Kcnma1-205;Kcnma1-212;Kcnma1-211;Kcnma1-229;Kcnma1-234;Kcnma1-223;Kcnma1-214;Kcnma1-216;Kcnma1-219;Kcnma1-220;Kcnma1-224;Kcnma1-233;Kcnma1-236;Kcnma1-237;Kcnma1-213;Kcnma1-228;Kcnma1-221;Kcnma1-225;Kcnma1-226;Kcnma1-230;Kcnma1-235;Kcnma1-238;Kcnma1-215,Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,16,41,16531,ENSMUSG00000063142,conserved gene and region,14,24003668,24003829,162,*,162,18,0.691358025,0.954500818,0.111111111,6.60E-15,CpGisland,TRUE,NA,NRS
10905,cg04908472,-0.00000688,0.00000478,-1.439794285,0.150934667,loss,ns,0.0000105,0.00000811,1.299905148,0.194599195,pos,ns,0.006604694,0.002377074,2.77849742,0.005794183,pos,ns,2.237007791,-0.000112113,0.0000817,-1.371460518,0.171223298,neg,ns,0.570379505,Tcf7l2,Tcf7l2_Intron,19,55778043,55778092,55778091,55778092,50,+,GTGAGGATGGCAGTCCTTGCTTGCTGTGGGTAACCTTTTCTACCTTCTCG,"Intron (Tcf7l2-213/Tcf7l2, intron 3 of 13)",19,55741820,55933229,191410,1,Tcf7l2-213,36223,Tcf7l2-213;Tcf7l2-201;Tcf7l2-208;Tcf7l2-211;Tcf7l2-212;Tcf7l2-206;Tcf7l2-204;Tcf7l2-205;Tcf7l2-222;Tcf7l2-215;Tcf7l2-214;Tcf7l2-207;Tcf7l2-202;Tcf7l2-209;Tcf7l2-210;Tcf7l2-217,Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,55,88,21416,ENSMUSG00000024985,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21594,cg25181542,0.0000544,0.00000739,7.354328759,1.73E-12,gain,yes,0.0000163,0.0000126,1.299769715,0.194645566,pos,ns,0.014871558,0.003680026,4.041155411,0.0000671,pos,ns,4.173014883,-0.000273735,0.000126556,-2.162962682,0.031308217,neg,ns,0.496175713,Zfhx3,Zfhx3_Intron,8,108484868,108484917,108484868,108484869,50,+,CGTGACTGGTGGAAGCCGCAGTATTGATTTCTGTGTCTCTCTAAACCTCA,"Intron (Zfhx3-204/Zfhx3, intron 3 of 15)",8,107942644,108961630,1018987,1,Zfhx3-204,542224,Zfhx3-204,Zfhx3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,114,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6053,cg24383637,0.00000479,0.00000187,2.566710675,0.010736067,gain,ns,0.00000412,0.00000317,1.299632946,0.194692402,pos,ns,0.000945866,0.000928685,1.018501365,0.309233959,pos,ns,0.50971282,-0.0000343,0.0000319,-1.074617541,0.283381698,neg,ns,0.011723625,Psd2,Psd2_Intergenic_upstream,18,35920120,35920169,35920120,35920121,50,-,CGGCCTCACGCCGTCAGACCCAATTTATCTCGCCGCCAAAGTTTCACAGC,Distal Intergenic,18,35964830,36014712,49883,1,Psd2-201,-44710,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,24,29,74002,ENSMUSG00000024347,mapped to different genes,18,35919677,35920257,581,*,581,41,0.690189329,0.594514326,0.070567986,4.29E-25,CpGisland,TRUE,U3,Pr-B
8443,cg09586183,0.0000311,0.00000538,5.780555452,1.82E-08,gain,yes,0.0000119,0.00000915,1.299587739,0.194707885,pos,ns,0.004745207,0.002680028,1.770581295,0.077613063,pos,ns,1.110065177,0.000095,0.0000922,1.030833317,0.303422561,pos,ns,0.169522119,Tlx1,Tlx1_Promoter,19,45150129,45150178,45150129,45150130,50,-,CGTCCTGCCTCAGGGCCTGGGCTCCATACCTGGGGAGTAGACAGTCTTCT,Promoter (<=1kb),19,45150680,45156943,6264,1,Tlx1-201,-551,Tlx1-201;Tlx1-202,Tlx1;Tlx1,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,7,21908,ENSMUSG00000025215,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
17122,cg10041393,0.0000483,0.0000191,2.529741463,0.011909853,gain,ns,0.0000421,0.0000324,1.299523175,0.194729999,pos,ns,0.00659091,0.009501341,0.693682008,0.488401093,pos,ns,0.311223373,0.000268629,0.00032675,0.822122721,0.41163893,pos,ns,0.638077023,Msi2,Msi2_Intron,11,88526889,88526938,88526889,88526890,50,+,CGTTTGCATGACAAACCTCCTACAAGATGCCGGCTAAACTGCCCTTTTGT,"Intron (Msi2-203/Msi2, intron 6 of 13)",11,88339382,88718229,378848,2,Msi2-203,191291,Msi2-203;Msi2-201;Msi2-207;Msi2-205,Msi2;Msi2;Msi2;Msi2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,21,36,76626,ENSMUSG00000069769,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26475,cg26018056,-0.0000395,0.00000811,-4.873734694,0.00000175,loss,yes,0.0000179,0.0000138,1.29943373,0.194760638,pos,ns,-0.00536687,0.004037827,-1.329147954,0.184776538,neg,ns,0.733353174,-0.000031,0.000138861,-0.222919103,0.823745278,neg,ns,0.757321204,Gm572,Gm572_Intergenic_downstream,4,148709053,148709102,148709053,148709054,50,-,CGCTGAGTCACTTAATCACATTATTTGGGAAAAATATAGGGGGGAAAGAG,Distal Intergenic,4,148643317,148671572,28256,1,Gm572-201,65785,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,11,230909,ENSMUSG00000070577,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17879,cg22090192,-0.0000167,0.00000492,-3.403253638,0.000753366,loss,ns,0.0000109,0.00000836,1.299346989,0.194790354,pos,ns,0.005091597,0.002448635,2.079361788,0.038405822,pos,ns,1.415602938,-0.000128553,0.0000842,-1.526608452,0.12787801,neg,ns,0.870946316,Phf21a,Phf21a_Intron,2,92302107,92302156,92302107,92302108,50,-,CGAGTGACAGCCCTGTGAAGTGCAGAACAGAAAGGTTTCTTATTGGTTTT,"Intron (Phf21a-201/Phf21a, intron 4 of 15)",2,92093117,92364666,271550,1,Phf21a-201,208990,Phf21a-201;Phf21a-202;Phf21a-204;Phf21a-209;Phf21a-208;Phf21a-207;Phf21a-219;Phf21a-206;Phf21a-205;Phf21a-203;Phf21a-213;Phf21a-215,Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,21,192285,ENSMUSG00000058318,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7983,cg09504625,0.0000767,0.00000981,7.82291678,8.18E-14,gain,yes,0.0000217,0.0000167,1.299154774,0.194856217,pos,ns,0.018184163,0.004882379,3.724447119,0.000232499,pos,ns,3.633578566,-0.000283875,0.000167905,-1.690694017,0.091900389,neg,ns,0.506772151,Nepro,Nepro_Intergenic_upstream,16,44672279,44672328,44672327,44672328,50,-,ATAACCTAAACCGACAGAGGTATTTGCATTCACAACCTGACTGATGACCG,Distal Intergenic,16,44724301,44737284,12984,1,Nepro-201,-52022,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,4,212547,ENSMUSG00000036208,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27720,cg16289986,-0.0000102,0.00000301,-3.379337567,0.00081948,loss,ns,0.00000665,0.00000512,1.29915253,0.194856985,pos,ns,0.004566582,0.001499262,3.04588717,0.00251917,pos,ns,2.598742567,-0.000108785,0.0000516,-2.109884658,0.03566944,neg,ns,0.929503023,Ahctf1,Ahctf1_threeUTR,1,179754464,179754513,179754464,179754465,50,+,CGTAAGGTTGAAGAACAATTCACCTACATAAGCTCCCTTGGGCTAGACTC,3' UTR,1,179744894,179803680,58787,2,Ahctf1-201,49167,Ahctf1-201;Ahctf1-204;Ahctf1-207;Ahctf1-202,Ahctf1;Ahctf1;Ahctf1;Ahctf1,0;-2055;-884;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,1,226747,ENSMUSG00000026491,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1231,cg06172365,-0.0000123,0.00001,-1.225557399,0.221295545,loss,ns,0.0000221,0.000017,1.299092597,0.194877525,pos,ns,0.000602811,0.004975213,0.121162879,0.903640523,pos,ns,0.044004302,-0.000322189,0.000171097,-1.88307739,0.060625998,neg,ns,0.57209558,Bcor,Bcor_Intron,X,12082333,12082382,12082381,12082382,50,-,AACAGCCCTTCTCAAAGCAGAAGTGAAACATCTCTACCGTTTGAAACCCG,"Intron (Bcor-201/Bcor, intron 1 of 13)",20,12036743,12160355,123613,2,Bcor-201,77973,Bcor-202;Bcor-203;Bcor-204;Bcor-206;Bcor-201;Bcor-207;Bcor-205,Bcor;Bcor;Bcor;Bcor;Bcor;Bcor;Bcor,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,56,74,71458,ENSMUSG00000040363,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
10728,cg17325394,-0.000000445,0.000001,-0.44423322,0.657183925,loss,ns,0.00000221,0.0000017,1.298967684,0.194920339,pos,ns,0.001360621,0.000498588,2.728951779,0.006716369,pos,ns,2.172865456,-0.0000505,0.0000171,-2.946783676,0.003454521,neg,ns,0.968819594,Sf3b1,Sf3b1_Exon,1,55016372,55016421,55016420,55016421,50,-,TTACCATCTGCAAAAGGATCAAGACGCTCTGGGGAAATTATCATGGTCCG,"Exon (Sf3b1-201/Sf3b1, exon 4 of 25)",1,54985169,55027481,42313,2,Sf3b1-201,11060,Sf3b1-201;Sf3b1-203;Sf3b1-205;Sf3b1-208;Sf3b1-206;Sf3b1-204,Sf3b1;Sf3b1;Sf3b1;Sf3b1;Sf3b1;Sf3b1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,7,81898,ENSMUSG00000025982,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21040,cg00521920,0.0000084,0.00000478,1.755243031,0.080205488,gain,ns,-0.0000106,0.00000813,-1.298928514,0.194933765,neg,ns,-0.003089316,0.002381462,-1.297235334,0.19551481,neg,ns,0.708820339,0.0000214,0.0000819,0.261037734,0.794236736,pos,ns,0.90570194,Glyctk,Glyctk_Intergenic_downstream,9,106144384,106144433,106144384,106144385,50,+,CGCCTCCCGCTGACAGCTCCTAATTGCATGTTGAAGCCATGTGATGGAGC,Distal Intergenic,9,106155548,106157250,1703,2,Glyctk-205,12817,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,6,235582,ENSMUSG00000020258,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2876,cg01940425,0.0000252,0.00000422,5.971964088,6.42E-09,gain,yes,-0.0000093,0.00000716,-1.298842728,0.194963174,neg,ns,0.001715326,0.002098234,0.817509764,0.414265037,pos,ns,0.382721719,0.0000564,0.0000722,0.781071909,0.435356262,pos,ns,0.026765377,Otx1,Otx1_Promoter,11,22003011,22003060,22003011,22003012,50,+,CGACACTTTCCTTTGGAGTCCGAATAAAATACGGTAACAGAATATGATGG,Promoter (<=1kb),11,21996858,22002897,6040,2,Otx1-202,-114,Ehbp1-201;Ehbp1-202;Ehbp1-207;Otx1-201;Otx1-203;Otx1-202,Ehbp1;Ehbp1;Ehbp1;Otx1;Otx1;Otx1,0;0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,8,13,18423,ENSMUSG00000005917,conserved gene and region,11,22002787,22003135,349,*,349,29,0.581661891,0.986452242,0.083094556,5.69E-20,CpGisland,TRUE,U3,Pr-B
17453,cg26226364,-0.000017,0.00000553,-3.080905697,0.002248756,loss,ns,-0.0000122,0.00000939,-1.298573947,0.195055336,neg,ns,-0.006465165,0.002750615,-2.350443702,0.019377496,neg,ns,1.712702335,-0.0000833,0.0000946,-0.881064709,0.378965374,neg,ns,0.867254954,Nrxn3,Nrxn3_threeUTR,12,90331590,90331639,90331638,90331639,50,+,TCACCATTATTGAGACCACCAAAGATTCCCTGTCCATGACCTCTGAGGCG,3' UTR,12,88722986,90332878,1609893,1,Nrxn3-213,1608604,Nrxn3-213;Nrxn3-208;Nrxn3-205;Nrxn3-201;Nrxn3-210;Nrxn3-214;Nrxn3-203;Nrxn3-202,Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,14,39,18191,ENSMUSG00000066392,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25399,cg23505597,0.0000109,0.0000079,1.38279827,0.167721973,gain,ns,0.0000174,0.0000134,1.298560076,0.195060093,pos,ns,0.005953991,0.003933138,1.51380199,0.13109492,pos,ns,0.882414137,-0.0000139,0.00013526,-0.102852316,0.918146684,neg,ns,0.824213934,Gm9341,Gm9341_Intergenic_downstream,7,136229460,136229509,136229460,136229461,50,-,CGCCAGGAAGCATGCGCCTCATTTTATCAAATGGTACCCGGCTTGGTAAT,Distal Intergenic,7,135952798,135953783,986,1,Gm9341-201,276711,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,27,28,668764,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26577,cg26478661,0.00000764,0.00000254,3.011919467,0.002809726,gain,ns,-0.0000056,0.00000431,-1.298507299,0.195078194,neg,ns,-0.001173826,0.001263059,-0.92935115,0.353430224,neg,ns,0.451696314,0.0000309,0.0000434,0.712431172,0.476733678,pos,ns,0.867582953,Casz1,Casz1_Intron,4,148924639,148924688,148924639,148924640,50,+,CGCGCAGGGAGAACTTTATTTCCTACCAGGGAGTTCAGAGCCACCAAGCA,"Intron (Casz1-201/Casz1, intron 4 of 15)",4,148804429,148945129,140701,1,Casz1-201,120210,Casz1-201;Casz1-202;Casz1-206,Casz1;Casz1;Casz1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,94,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19986,cg06284541,0.0000661,0.00000852,7.765345192,1.20E-13,gain,yes,-0.0000188,0.0000145,-1.298456663,0.195095561,neg,ns,-0.004943422,0.004239058,-1.166160378,0.244445994,neg,ns,0.611817076,0.000362711,0.000145781,2.488057639,0.013369325,pos,ns,0.774925041,Nhlh2,Nhlh2_Intergenic_upstream,3,101967320,101967369,101967368,101967369,50,-,GTGTCTCTCCCAAGTACTCTGTCACCCTGGTAACCATGGAGACCATGACG,Distal Intergenic,3,102010076,102014717,4642,1,Nhlh2-202,-42756,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,5,18072,ENSMUSG00000048540,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
267,cg00861228,-0.00000484,0.00000732,-0.661929259,0.508508299,loss,ns,0.0000161,0.0000124,1.298443355,0.195100126,pos,ns,0.009638591,0.003641811,2.646647951,0.008544525,pos,ns,2.06831206,-0.00031436,0.000125242,-2.510030247,0.012581315,neg,ns,0.91617447,Atad2b,Atad2b_Intron,12,4970457,4970506,4970457,4970458,50,+,CGACATCTTCTGGTGAGGAGAAAACGTAAATCTCTCCAGCACTACTTCAG,"Intron (Atad2b-201/Atad2b, intron 15 of 30)",12,4917404,5047394,129991,1,Atad2b-201,53053,Atad2b-201;Atad2b-203,Atad2b;Atad2b,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,7,320817,ENSMUSG00000052812,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20991,cg14231245,0.0000322,0.00000383,8.407075073,1.55E-15,gain,yes,-0.00000844,0.0000065,-1.298344082,0.19513418,neg,ns,-0.002753918,0.001904827,-1.445757513,0.149255417,neg,ns,0.826069898,0.000130041,0.0000655,1.985150129,0.048008782,pos,ns,0.930007828,Immp1l,Immp1l_Intron,2,105918256,105918305,105918256,105918257,50,+,CGGTAACACCTTCACTGCAGAAAAAGCCACCTGGCGCTATAACTGGCAGC,"Intron (Immp1l-201/Immp1l, intron 2 of 6)",2,105904638,105965558,60921,1,Immp1l-201,13618,Immp1l-201,Immp1l,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,7,66541,ENSMUSG00000042670,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18912,cg24619759,0.0000958,0.0000178,5.395993902,0.000000136,gain,yes,-0.0000391,0.0000302,-1.298060988,0.195231313,neg,ns,0.050640983,0.008834977,5.731874699,2.35E-08,pos,ns,7.628044802,-0.001418073,0.000303834,-4.667259134,0.00000455,neg,ns,0.575301978,Nfia,Nfia_Intron,4,97880476,97880525,97880476,97880477,50,+,CGCACAAGCAGAGAACTTTGCTTCTGCCAACTGTGACTTCAGAACCCAGG,"Intron (Nfia-208/Nfia, intron 2 of 3)",4,97772734,98000466,227733,1,Nfia-208,107742,Nfia-208;Nfia-202;Nfia-203;Nfia-205;Nfia-201;Nfia-204;Nfia-207,Nfia;Nfia;Nfia;Nfia;Nfia;Nfia;Nfia,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,44,18027,ENSMUSG00000028565,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27566,cg15355508,0.0000181,0.0000087,2.080550062,0.038296031,gain,ns,0.0000192,0.0000148,1.298043958,0.195237158,pos,ns,0.014234889,0.004332248,3.285797532,0.001133535,pos,ns,2.945565136,-0.000453624,0.000148986,-3.044752263,0.002528414,neg,ns,0.821375225,Mid1,Mid1_Exon,X,169927629,169927678,169927677,169927678,50,+,ATCAGGTGGCAGCTTTGAGTGAGCGCTATGACAAATTGAAGGTTAGTCCG,"Exon (Mid1-204/Mid1, exon 2 of 10)",20,169685199,169990795,305597,1,Mid1-206,242430,Mid1-206;Mid1-204;Mid1-201;Mid1-205;Mid1-202;Mid1-214;Mid1-215;Mid1-211,Mid1;Mid1;Mid1;Mid1;Mid1;Mid1;Mid1;Mid1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,8,17318,ENSMUSG00000035299,conserved gene but different region,X,169927461,169927683,223,*,223,13,0.533632287,0.835928489,0.058295964,0.000000236,CpGisland,TRUE,NA,NRS
16887,cg12031700,-0.000022,0.00000804,-2.737464929,0.00654904,loss,ns,0.0000177,0.0000137,1.297787361,0.195325233,pos,ns,0.002905632,0.004001297,0.726172379,0.468281012,pos,ns,0.329493452,-0.000390841,0.000137604,-2.840328661,0.00480483,neg,ns,0.557677998,Slc24a2,Slc24a2_Exon,4,87049923,87049972,87049971,87049972,50,-,ATGATCCAAGTTCTACAACATCACAGTAAAAGACACAAAGATAAGGAACG,"Exon (Slc24a2-203/Slc24a2, exon 5 of 11)",4,86983124,87230477,247354,2,Slc24a2-203,180505,Slc24a2-203;Slc24a2-204;Slc24a2-201;Slc24a2-202;Slc24a2-208,Slc24a2;Slc24a2;Slc24a2;Slc24a2;Slc24a2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,3,76376,ENSMUSG00000037996,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2007,cg13297990,-0.0000328,0.00000559,-5.871942949,1.11E-08,loss,yes,-0.0000123,0.0000095,-1.297527537,0.195414445,neg,ns,-0.006027961,0.00278429,-2.164990536,0.031151137,neg,ns,1.506526093,-0.0000894,0.0000958,-0.93361151,0.351230931,neg,ns,0.861979478,Prune2,Prune2_Exon,19,17060240,17060289,17060240,17060241,50,-,CGGGTTAAAGGTTGCAGGAACCATGGCTTGGCAATTAGCGATGTAAATGA,"Exon (Gm27796-201/Gm27796-201, exon 1 of 1)",19,16956118,17223932,267815,1,Prune2-201,104122,Prune2-205;Prune2-201,Prune2;Prune2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,8,353211,ENSMUSG00000039126,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13742,cg13618363,0.0000309,0.000012,2.565496113,0.010772925,gain,ns,-0.0000265,0.0000204,-1.297306167,0.195490477,neg,ns,0.003255517,0.005988436,0.543633874,0.587084172,pos,ns,0.231299628,-0.0000895,0.000205942,-0.434354373,0.664333293,neg,ns,0.151140828,Dcc,Dcc_Exon,18,72350392,72350441,72350392,72350393,50,+,CGAAGAGTACAAAAGCCAGCTTGGGTACCCAAACACATCTAAGACTATTC,Promoter (<=1kb),18,71253634,72351069,1097436,2,Dcc-202,628,Dcc-202;Dcc-201;Dcc-203,Dcc;Dcc;Dcc,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,4,13176,ENSMUSG00000060534,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
12170,cg18247053,0.000000588,0.00000154,0.383164884,0.701860128,gain,ns,0.00000338,0.00000261,1.297295262,0.195494223,pos,ns,0.001914796,0.000764321,2.505225521,0.012750009,pos,ns,1.894489507,-0.0000424,0.0000263,-1.612382688,0.107896236,neg,ns,0.961739665,Map2k5,Map2k5_Intron,9,63198435,63198484,63198483,63198484,50,-,GCTTTGGCCATTTGGATGAGCAATATATCATTACATACAACCTTCCAGCG,"Intron (Map2k5-201/Map2k5, intron 19 of 21)",9,63163768,63377902,214135,2,Map2k5-201,179418,Map2k5-201,Map2k5,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,34,37,23938,ENSMUSG00000058444,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24129,cg26053552,0.00000528,0.00000526,1.004367916,0.315984627,gain,ns,0.0000116,0.00000894,1.297293725,0.195494752,pos,ns,0.010118978,0.002618821,3.86394323,0.000135891,pos,ns,3.866808496,-0.000432399,0.0000901,-4.801172989,0.00000246,neg,ns,0.379901835,Anapc5,Anapc5_Exon,5,122802840,122802889,122802888,122802889,50,-,ACACGTGATCGTTGGACTCCTGGGCAATCCTAATTGCCTCCTGCAGGGCG,"Exon (Anapc5-201/Anapc5, exon 8 of 17)",5,122787459,122821339,33881,2,Anapc5-201,18450,Anapc5-201;Anapc5-202;Anapc5-203;Anapc5-208;Anapc5-205;Anapc5-212;Anapc5-218;Anapc5-209;Anapc5-204;Anapc5-215;Anapc5-217;Anapc5-216;Anapc5-207;Anapc5-214;Anapc5-213,Anapc5;Anapc5;Anapc5;Anapc5;Anapc5;Anapc5;Anapc5;Anapc5;Anapc5;Anapc5;Anapc5;Anapc5;Anapc5;Anapc5;Anapc5,0;0;0;0;0;0;0;-3110;0;0;0;0;0;18129;18381,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,6,59008,ENSMUSG00000029472,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27792,cg10448703,0.00000294,0.00000642,0.458245214,0.647097342,gain,ns,-0.0000141,0.0000109,-1.297238172,0.195513836,neg,ns,0.006583763,0.003194689,2.060846265,0.040151604,pos,ns,1.396297103,-0.000274847,0.000109865,-2.501676992,0.012875886,neg,ns,0.88050458,Spata17,Spata17_Intron,1,187151117,187151166,187151117,187151118,50,-,CGTGGTGGCAATGACACTCCGCATTTAGTAAATATGCAAACTGTTCACTT,"Intron (Spata17-205/Spata17, intron 5 of 10)",1,187044648,187215465,170818,2,Spata17-205,64299,Spata17-205;Spata17-201;Spata17-206;Spata17-202,Spata17;Spata17;Spata17;Spata17,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,6,74717,ENSMUSG00000026611,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13335,cg18478059,-0.00000907,0.00000588,-1.542205516,0.124043809,loss,ns,-0.000013,0.00000999,-1.297167826,0.195538004,neg,ns,-0.00557084,0.002926551,-1.903550968,0.057894643,neg,ns,1.237361618,-0.000133646,0.000100644,-1.327913724,0.185183521,neg,ns,0.734432229,0610010K14Rik,0610010K14Rik_Intergenic_downstream,11,70234231,70234280,70234279,70234280,50,-,CATTTCCTGCCTTTGGCCTCCATCTTGTGGCAGGCCCAGGGCCCAGGGCG,Distal Intergenic,11,70235206,70236196,991,2,0610010K14Rik-211,1965,0610010K14Rik-211;0610010K14Rik-210;0610010K14Rik-205;0610010K14Rik-209;0610010K14Rik-202;0610010K14Rik-204;0610010K14Rik-208;0610010K14Rik-207;0610010K14Rik-203;0610010K14Rik-213;0610010K14Rik-212;0610010K14Rik-206;0610010K14Rik-201;0610010K14Rik-214;Bcl6b-201;Bcl6b-203;Bcl6b-202;Gm21988-201;Gm21988-202;Rnasek-202;Rnasek-201;Rnasek-203,0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;Bcl6b;Bcl6b;Bcl6b;Gm21988;Gm21988;Rnasek;Rnasek;Rnasek,1916;0;0;0;0;0;0;0;0;0;0;0;0;0;-4492;-4554;-4433;0;0;5500;5562;4778,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,9,104457,ENSMUSG00000020831,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9841,cg23976192,-0.00000639,0.00000124,-5.143306121,0.00000048,loss,yes,0.00000274,0.00000211,1.296875433,0.195638481,pos,ns,0.000508157,0.00061865,0.82139699,0.412051422,pos,ns,0.385048583,-0.0000402,0.0000213,-1.889783582,0.059719751,neg,ns,0.042651702,Olfr750,Olfr750_Intergenic_downstream,14,51065192,51065241,51065192,51065193,50,+,CGACCCCTGGTTTACAAGACCAGCGCTCTAACCCCTGAGCTATGGAGCCC,Downstream (1-2kb),14,51070311,51071442,1132,2,Olfr750-201,6201,Olfr750-202,Olfr750,9194,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,1,1,404319,ENSMUSG00000035932,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
7504,cg15578835,0.0000566,0.00000449,12.59737512,1.15E-29,gain,yes,-0.0000099,0.00000763,-1.296838418,0.195651204,neg,ns,0.005343963,0.002236051,2.389911313,0.017449518,pos,ns,1.758216558,-0.0000359,0.0000769,-0.467020846,0.640813035,neg,ns,0.069571545,Ppp2r2b,Ppp2r2b_fiveUTR,18,42898801,42898850,42898849,42898850,50,-,ATGTCCTCCTCCATTGACAGCAGGCTTACTTGCGTGGGAACCAGAAGCCG,Promoter (<=1kb),18,42758468,42898815,140348,2,Ppp2r2b-206,0,Ppp2r2b-204;Ppp2r2b-202;Ppp2r2b-201;Ppp2r2b-203;Ppp2r2b-208;Ppp2r2b-207;Ppp2r2b-205;Ppp2r2b-206,Ppp2r2b;Ppp2r2b;Ppp2r2b;Ppp2r2b;Ppp2r2b;Ppp2r2b;Ppp2r2b;Ppp2r2b,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,9,15,72930,ENSMUSG00000024500,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
26145,cg19635296,-0.0000215,0.00000577,-3.727233617,0.000230054,loss,ns,-0.0000127,0.0000098,-1.29667631,0.19570693,neg,ns,-0.004839181,0.002871856,-1.685035992,0.092987982,neg,ns,1.031573177,0.000107307,0.0000988,1.086509645,0.278097684,pos,ns,0.867035708,Lmo4,Lmo4_Intron,3,144195343,144195392,144195343,144195344,50,+,CGGGATCTGGACCCATTTGTCATCATATCTCTCTGGGTGTTTGCTGTATC,"Intron (Lmo4-203/Lmo4, intron 2 of 4)",3,144188530,144202396,13867,2,Lmo4-203,7004,Lmo4-203;Lmo4-201;Lmo4-202;Lmo4-207;Lmo4-206;Lmo4-208,Lmo4;Lmo4;Lmo4;Lmo4;Lmo4;Lmo4,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,54,16911,ENSMUSG00000028266,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27519,cg01534906,0.0000132,0.00000352,3.749969629,0.000210992,gain,ns,0.00000776,0.00000599,1.296357081,0.195816701,pos,ns,-0.001266731,0.001753604,-0.722358567,0.470618618,neg,ns,0.327330896,0.000113035,0.0000603,1.874341564,0.061823668,pos,ns,0.926145976,Zfp64,Zfp64_Exon,2,168926851,168926900,168926851,168926852,50,-,CGAGTGCACCCGCATGTGCCTTTTCAAGTCCGAGCTGATTTTGAACTTGG,"Exon (Zfp64-201/Zfp64, exon 6 of 6)",2,168893331,168955587,62257,2,Zfp64-203,28687,Zfp64-203;Zfp64-201,Zfp64;Zfp64,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,11,22722,ENSMUSG00000027551,conserved gene and region,2,168926562,168926882,321,*,321,23,0.585669782,0.83792986,0.07165109,1.70E-14,CpGisland,TRUE,U10,Tr-S
12048,cg10111250,0.0000142,0.00000522,2.713926151,0.007021151,gain,ns,0.0000115,0.00000887,1.296271549,0.19584612,pos,ns,0.005644687,0.002598788,2.172046112,0.030609891,pos,ns,1.514138218,-0.0000807,0.0000894,-0.903280659,0.367078313,neg,ns,0.883043849,Fap,Fap_Exon,2,62548565,62548614,62548613,62548614,50,-,CTTACTAATTTACTCCCAACAGGCGACCAGCATAAATACTGAATTGGACG,"Exon (Fap-202/Fap, exon 7 of 26)",2,62500943,62574075,73133,2,Fap-202,25461,Fap-202;Fap-205;Fap-201;Fap-208;Fap-209;Fap-206;Fap-204;Fap-207,Fap;Fap;Fap;Fap;Fap;Fap;Fap;Fap,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,8,14089,ENSMUSG00000000392,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12847,cg22180211,-0.00000906,0.00000514,-1.762086876,0.079040157,loss,ns,-0.0000113,0.00000873,-1.296243812,0.195855661,neg,ns,0.001384061,0.002558443,0.540977742,0.588911438,pos,ns,0.229950011,-0.000133454,0.000088,-1.516785787,0.130339829,neg,ns,0.886688032,Ebf2,Ebf2_Intron,14,67309399,67309448,67309447,67309448,50,-,GATTTAAAATACCAACCAACATTTGCCTGCAATAATTTCTGTTGTAAACG,"Intron (Ebf2-201/Ebf2, intron 7 of 16)",14,67233292,67429777,196486,1,Ebf2-201,76107,Ebf2-201;Ebf2-203;Ebf2-202,Ebf2;Ebf2;Ebf2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,21,13592,ENSMUSG00000022053,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5553,cg04655309,0.00000807,0.00000269,2.996951258,0.002947271,gain,ns,-0.00000593,0.00000457,-1.296231083,0.19586004,neg,ns,-0.002193228,0.001339827,-1.636948489,0.102655945,neg,ns,0.988615896,0.0000582,0.0000461,1.264005032,0.207177832,pos,ns,0.85702428,Hdac9,Hdac9_Exon,12,34248333,34248382,34248381,34248382,50,-,CCTGAGGCCACTTTGGAAGCCAGCTCGATGACACAGCCAACAGCCATGCG,"Exon (Hdac9-205/Hdac9, exon 16 of 25)",12,34047580,34528328,480749,2,Hdac9-205,279946,Hdac9-205;Hdac9-204;Hdac9-206;Hdac9-210;Hdac9-207,Hdac9;Hdac9;Hdac9;Hdac9;Hdac9,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,31,79221,ENSMUSG00000004698,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4854,cg20041510,-0.0000178,0.00000424,-4.188544711,0.0000366,loss,ns,-0.00000934,0.00000721,-1.296155228,0.195886135,neg,ns,-0.004589614,0.002111816,-2.173302029,0.030514403,neg,ns,1.515495124,-0.0000676,0.0000726,-0.931303352,0.35242137,neg,ns,0.914885406,Zbtb44,Zbtb44_Exon,9,31053401,31053450,31053401,31053402,50,-,CGTGTCCAGGACAAAATCTTCCGGGCACATAAGGTGGTACTAGCAGCTTG,"Exon (Zbtb44-205/Zbtb44, exon 2 of 6)",9,31030644,31070233,39590,1,Zbtb44-205,22757,Zbtb44-205;Zbtb44-201;Zbtb44-206;Zbtb44-202;Zbtb44-204;Zbtb44-203,Zbtb44;Zbtb44;Zbtb44;Zbtb44;Zbtb44;Zbtb44,0;0;0;0;0;-802,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,14,15,235132,ENSMUSG00000047412,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
584,cg19877816,0.00000834,0.00000248,3.359775541,0.000877539,gain,ns,-0.00000547,0.00000422,-1.296098823,0.19590554,neg,ns,0.001306161,0.001235937,1.056818506,0.291417285,pos,ns,0.535484692,-0.0000165,0.0000425,-0.387174467,0.698892718,neg,ns,0.050959054,Rbfox1,Rbfox1_Intron,16,7039986,7040035,7040034,7040035,50,-,CCAGCTTTCGTGTGCCTTGACTTTTATGTACTTACAGCAGGTAAGGCGCG,"Intron (Rbfox1-205/Rbfox1, intron 4 of 11)",16,5885355,7353045,1467691,1,Rbfox1-205,1154631,Rbfox1-205;Rbfox1-201;Rbfox1-202,Rbfox1;Rbfox1;Rbfox1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,35,268859,ENSMUSG00000008658,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4681,cg12285520,-0.0000212,0.00000605,-3.505125855,0.000523696,loss,ns,0.0000133,0.0000103,1.296039344,0.195926005,pos,ns,-0.004463018,0.003009016,-1.483215276,0.139033152,neg,ns,0.856881632,0.000261152,0.00010348,2.52369558,0.012112329,pos,ns,0.940587282,Mecom,Mecom_Intron,3,30106626,30106675,30106626,30106627,50,+,CGGGCGATCCTCCGACTGCTCGGCGCCAACCACAACATGCTACCCACCGT,"Intron (Mecom-212/Mecom, intron 1 of 15)",3,29951299,30509733,558435,2,Mecom-212,403058,Mecom-212;Mecom-203;Mecom-210;Mecom-213;Mecom-207;Mecom-208;Mecom-211,Mecom;Mecom;Mecom;Mecom;Mecom;Mecom;Mecom,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,80,14013,ENSMUSG00000027684,conserved gene and region,3,30106598,30106734,137,*,137,14,0.613138686,1.097254005,0.102189781,3.95E-11,CpGisland,TRUE,U9,En-Pp
27567,cg14704094,0.0000341,0.0000123,2.786113685,0.005663071,gain,ns,0.000027,0.0000208,1.296024188,0.195931219,pos,ns,0.012954323,0.006100028,2.123649646,0.034491146,pos,ns,1.462292373,-0.0003426,0.000209779,-1.633143833,0.103453964,neg,ns,0.760077623,Mid1,Mid1_Exon,X,169927634,169927683,169927682,169927683,50,+,GTGGCAGCTTTGAGTGAGCGCTATGACAAATTGAAGGTTAGTCCGATCCG,"Exon (Mid1-204/Mid1, exon 2 of 10)",20,169685199,169990795,305597,1,Mid1-206,242435,Mid1-206;Mid1-204;Mid1-201;Mid1-205;Mid1-202;Mid1-214;Mid1-215;Mid1-211,Mid1;Mid1;Mid1;Mid1;Mid1;Mid1;Mid1;Mid1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,8,17318,ENSMUSG00000035299,conserved gene but different region,X,169927461,169927683,223,*,223,13,0.533632287,0.835928489,0.058295964,0.000000236,CpGisland,TRUE,NA,NRS
27064,cg22123219,-0.0000449,0.0000125,-3.604534369,0.000364225,loss,ns,-0.0000274,0.0000212,-1.295829937,0.195998066,neg,ns,-0.002127445,0.006203505,-0.342942371,0.731874248,neg,ns,0.135563534,-0.000565272,0.000213338,-2.649655501,0.008470544,neg,ns,0.654695314,Blcap,Blcap_Exon,2,157561196,157561245,157561196,157561197,50,+,CGCATATTTCCTTCAAGGTGTTCCTGGAATGCTGCATTTACTGGGTAGGA,"Exon (Nnat-208/Nnat, exon 2 of 3)",2,157556362,157566337,9976,2,Blcap-202,5092,Blcap-202;Blcap-201;Blcap-205;Blcap-204;Blcap-203;Nnat-205;Nnat-208;Nnat-202;Nnat-210;Nnat-207;Nnat-209;Nnat-206;Nnat-201;Nnat-204;Nnat-203,Blcap;Blcap;Blcap;Blcap;Blcap;Nnat;Nnat;Nnat;Nnat;Nnat;Nnat;Nnat;Nnat;Nnat;Nnat,0;0;0;0;5086;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,9,53619,ENSMUSG00000067787,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5212,cg18013555,-0.00000197,0.00000257,-0.766234794,0.444119669,loss,ns,-0.00000565,0.00000436,-1.295639501,0.196063617,neg,ns,0.000547131,0.001277525,0.42827404,0.66874902,pos,ns,0.174736842,0.00000283,0.0000439,0.06440912,0.948685982,pos,ns,0.922615616,Chchd3,Chchd3_Intron,6,32874983,32875032,32875031,32875032,50,+,TGATCATTTGTTTCCCTGAATTCTTTCTCTCATCATTTACTCATTACACG,"Intron (Chchd3-206/Chchd3, intron 1 of 4)",6,32790976,32892330,101355,2,Chchd3-206,17298,Chchd3-206;Chchd3-201;Chchd3-203;Chchd3-210;Chchd3-208;Chchd3-204;Chchd3-205;Chchd3-202,Chchd3;Chchd3;Chchd3;Chchd3;Chchd3;Chchd3;Chchd3;Chchd3,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,5,66075,ENSMUSG00000053768,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20465,cg18779960,0.000101803,0.00000763,13.33585272,2.24E-32,gain,yes,-0.0000168,0.000013,-1.295562026,0.196090289,neg,ns,0.008706075,0.003799404,2.291431883,0.022608863,pos,ns,1.645721282,0.0000349,0.000130661,0.266808627,0.789793906,pos,ns,0.071117335,Hoxc4,Hoxc4_Intergenic_downstream,15,103061674,103061723,103061674,103061675,50,-,CGCAGCCGCCTTTGTACGCGTGATTTATGACTTCAGTCTTGGTTCACCAA,Distal Intergenic,15,103034395,103036852,2458,1,Hoxc4-201,27328,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,32,91,15423,ENSMUSG00000075394,mapped to different genes,15,103061537,103061809,273,*,273,19,0.586080586,0.8125,0.06959707,7.69E-12,CpGisland,TRUE,U13,Hc-P
27493,cg00532890,0.0000085,0.00000223,3.815496452,0.000164049,gain,ns,-0.0000049,0.00000378,-1.295510213,0.196108128,neg,ns,0.001068973,0.00110826,0.964550771,0.335521688,pos,ns,0.474279401,-0.0000522,0.0000381,-1.370774967,0.17143676,neg,ns,0.026413,Pbx1,Pbx1_fiveUTR,1,168431889,168431938,168431889,168431890,50,+,CGCTTAAATCTGTGGCTTAATCCTTTTGCAAATATGCATTGATCGGGAGA,Promoter (<=1kb),1,168153542,168431897,278356,2,Pbx1-205,0,Pbx1-208;Pbx1-205;Pbx1-206;Pbx1-201;Pbx1-202;Pbx1-204;Pbx1-207,Pbx1;Pbx1;Pbx1;Pbx1;Pbx1;Pbx1;Pbx1,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,84,18514,ENSMUSG00000052534,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
16686,cg13643339,-0.0000232,0.00000424,-5.467227081,9.42E-08,loss,yes,-0.00000934,0.00000721,-1.295476579,0.196119709,neg,ns,0.003261936,0.002112642,1.544007801,0.123606628,pos,ns,0.90795824,-0.000217649,0.0000727,-2.995708488,0.002958965,neg,ns,0.063360342,Tgfb3,Tgfb3_fiveUTR,12,86078589,86078638,86078637,86078638,50,+,TTACACTTCCTCGGGGGCTTTCTAAATGACTTTGTTCACGCTGCCTCTCG,Promoter (<=1kb),12,86056745,86079041,22297,2,Tgfb3-201,403,Ift43-204;Ift43-201;Ift43-205;Ift43-206;Ift43-207;Tgfb3-201,Ift43;Ift43;Ift43;Ift43;Ift43;Tgfb3,-3903;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,3,21809,ENSMUSG00000021253,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
27849,cg22883929,-0.00000941,0.00000585,-1.608270808,0.108793806,loss,ns,0.0000129,0.00000994,1.295440272,0.196132211,pos,ns,0.00672238,0.002911563,2.308855872,0.021609032,pos,ns,1.665364688,-0.000168715,0.000100128,-1.684981615,0.092998485,neg,ns,0.874894496,Ush2a,Ush2a_Intron,1,188457516,188457565,188457564,188457565,50,+,TAACATATGGTCAGCTCAATATGCCGCATCTTAAATCGGTTGGTGAGTCG,"Intron (Ush2a-201/Ush2a, intron 19 of 70)",1,188263034,188965041,702008,1,Ush2a-201,194482,Ush2a-201,Ush2a,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,33,36,22283,ENSMUSG00000026609,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2659,cg15352172,0.00000813,0.00000338,2.403297295,0.016835119,gain,ns,-0.00000744,0.00000574,-1.295318978,0.196173981,neg,ns,-0.001826777,0.001682679,-1.085636276,0.278483439,neg,ns,0.555200626,0.000021,0.0000579,0.363129909,0.716755326,pos,ns,0.884607898,Vcl,Vcl_Exon,14,21027193,21027242,21027241,21027242,50,+,GCTGCTGTTAATGCCATCCAATCAGCCGGTCAACCAGCCCATTCTGGCCG,"Exon (Vcl-202/Vcl, exon 3 of 3)",14,20929398,21033676,104279,1,Vcl-201,97795,Ap3m1-206;Vcl-201;Vcl-202,Ap3m1;Vcl;Vcl,25208;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,8,22330,ENSMUSG00000021823,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1893,cg05811612,-0.00000242,0.00000154,-1.570023366,0.117429777,loss,ns,0.00000339,0.00000262,1.295301294,0.196180071,pos,ns,0.001057788,0.000767846,1.37760426,0.169319222,pos,ns,0.771293735,-0.000000257,0.0000264,-0.009720252,0.992250735,neg,ns,0.042674853,Bicra,Bicra_Promoter,7,16047817,16047866,16047817,16047818,50,-,CGCCCTGTCACAGCCCCGACTCGCAGGTAGAGAGAGTTAAGAGATTTAAA,Promoter (<=1kb),7,15970672,16047921,77250,2,Bicra-204,55,Bicra-204,Bicra,0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,3,6,243842,ENSMUSG00000070808,conserved gene but different region,7,16047784,16047839,56,*,56,7,0.75,1.149560117,0.125,0.00000289,CpGisland,TRUE,U1,Pr-A
12972,cg08209397,-0.0000119,0.00000323,-3.689003088,0.000265815,loss,ns,0.00000711,0.00000549,1.295295729,0.196181988,pos,ns,-0.001284366,0.001608308,-0.798582313,0.425144017,neg,ns,0.371463928,0.0000739,0.0000553,1.336931458,0.182225266,pos,ns,0.951943482,Gm4842,Gm4842_Intergenic_upstream,18,68981551,68981600,68981599,68981600,50,+,TGTCACACATGAATGACTCCTGCGCAGGCCAAATGACAGATGTATTTCCG,Distal Intergenic,18,69256288,69257122,835,1,Gm4842-201,-274688,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,10,225681,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26615,cg13151947,-0.00000013,0.00000238,-0.054794106,0.956337792,loss,ns,0.00000524,0.00000405,1.295172348,0.196224485,pos,ns,0.001497965,0.00118512,1.263977177,0.207187817,pos,ns,0.683635786,-0.0000694,0.0000408,-1.704025175,0.089378439,neg,ns,0.941230419,Pex14,Pex14_Intron,4,148988952,148989001,148988952,148988953,50,+,CGACCTTGCTCTTCTCATTGGGGCATGAAATTACGACGGCAGCACCTTGA,"Intron (Pex14-201/Pex14, intron 3 of 8)",4,148960535,149099876,139342,2,Pex14-201,110875,Pex14-201;Pex14-202;Pex14-205;Pex14-203,Pex14;Pex14;Pex14;Pex14,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,41,48,56273,ENSMUSG00000028975,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12540,cg11759060,-0.00000627,0.00000165,-3.800970541,0.000173514,loss,ns,-0.00000363,0.0000028,-1.295109087,0.196246276,neg,ns,-0.000402869,0.000821386,-0.490473777,0.624145658,neg,ns,0.204714047,0.00000833,0.0000282,0.29476693,0.76836923,pos,ns,0.954533132,Prpf39,Prpf39_fiveUTR,12,65043692,65043741,65043692,65043693,50,-,CGTCTTATTGCATTTTTGGTCAGACGCTGTCATTGATGCTCTAATGGGTC,5' UTR,12,65036333,65063386,27054,1,Prpf39-201,7359,Prpf39-201;Prpf39-205;Prpf39-202;Prpf39-207;Prpf39-210;Prpf39-209;Prpf39-203;Prpf39-208;Prpf39-206,Prpf39;Prpf39;Prpf39;Prpf39;Prpf39;Prpf39;Prpf39;Prpf39;Prpf39,0;0;0;0;0;0;0;-251;-4575,TRUE,FALSE,FALSE,TRUE,TRUE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,7,328110,ENSMUSG00000035597,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18499,cg18725340,-0.00000223,0.00000162,-1.375961307,0.169826838,loss,ns,0.00000357,0.00000276,1.295073665,0.196258479,pos,ns,0.002150363,0.000807487,2.663032131,0.008148422,pos,ns,2.088926496,-0.000089,0.0000278,-3.206230664,0.001485196,neg,ns,0.958492422,Cnot6l,Cnot6l_threeUTR,5,96098243,96098292,96098291,96098292,50,+,ACCTGACGGCAGAATTTGGTCTCGTTCTTTTAATGTAATCCATGGCCTCG,3' UTR,5,96070333,96161990,91658,2,Cnot6l-210,63698,Cnot6l-210;Cnot6l-201;Cnot6l-202;Cnot6l-203,Cnot6l;Cnot6l;Cnot6l;Cnot6l,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,11,13,231464,ENSMUSG00000034724,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14736,cg00614320,-0.0000407,0.00000806,-5.048003786,0.000000763,loss,yes,0.0000177,0.0000137,1.29500562,0.196281922,pos,ns,-0.002712503,0.004011048,-0.676258062,0.499381036,neg,ns,0.301567954,0.000103105,0.00013794,0.747461217,0.455351796,pos,ns,0.818772196,2210408I21Rik,2210408I21Rik_Intron,13,77490616,77490665,77490664,77490665,50,+,GGCTTTCCAAGCAAGACATGATGGATTGTGACCTTAATATGGGTTAGCCG,"Intron (2210408I21Rik-201/2210408I21Rik, intron 19 of 19)",13,77135540,77613784,478245,1,2210408I21Rik-201,355076,2210408I21Rik-201,2210408I21Rik,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,19,20,72371,ENSMUSG00000071252,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8380,cg01228014,-0.00000633,0.00000179,-3.532273217,0.000474638,loss,ns,0.00000394,0.00000305,1.294882227,0.196324439,pos,ns,0.001242743,0.000892448,1.392509791,0.164766057,pos,ns,0.783132252,-0.0000443,0.0000307,-1.443005826,0.150028506,neg,ns,0.951896188,Zeb2,Zeb2_Intron,2,45071404,45071453,45071404,45071405,50,-,CGTCACCCATGGATGCCCAGCCAGGGTTTCCCACCTGAGACAGATTGCGA,"Intron (Zeb2-212/Zeb2, intron 3 of 10)",2,44983632,45117395,133764,2,Zeb2-212,45942,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12910,cg06322540,-0.0000148,0.00000665,-2.222730109,0.026955103,loss,ns,0.0000146,0.0000113,1.294792136,0.196355486,pos,ns,-0.003745622,0.003310637,-1.131390224,0.258765349,neg,ns,0.587093879,0.0000914,0.000113853,0.803090726,0.422537603,pos,ns,0.077818346,Arid5b,Arid5b_Intron,10,68277284,68277333,68277284,68277285,50,+,CGCTTTGAAATCCGCCCGGGCAGATCTGCAAGTTATTTGAATGTATTATT,"Intron (Arid5b-204/Arid5b, intron 2 of 9)",10,68092520,68278740,186221,2,Arid5b-204,1407,Arid5b-204;Arid5b-201;Arid5b-202,Arid5b;Arid5b;Arid5b,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,33,71371,ENSMUSG00000019947,conserved gene and region,10,68277171,68277311,141,*,141,14,0.581560284,1.2,0.09929078,5.96E-11,CpGisland,TRUE,U1,Pr-A
6675,cg16770315,0.00000282,0.00000466,0.603791226,0.546424018,gain,ns,-0.0000103,0.00000792,-1.29442684,0.196481408,neg,ns,-0.004537573,0.002320719,-1.9552444,0.051452488,neg,ns,1.288593617,0.000112342,0.0000798,1.40762439,0.160244246,pos,ns,0.828269838,Arap3,Arap3_Exon,18,37989993,37990042,37989993,37989994,50,+,CGTAGTCAGACAGGGTCTCGGTTACTGCTTCCTGCAGAGCGGCCGCCCAG,"Exon (Arap3-208/Arap3, exon 10 of 33)",18,37972628,37998908,26281,2,Arap3-208,8866,Arap3-208;Arap3-201;Arap3-207;Arap3-209,Arap3;Arap3;Arap3;Arap3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,10,106952,ENSMUSG00000024451,conserved gene and region,18,37989897,37990066,170,*,170,12,0.652941177,0.674603175,0.070588235,0.000000101,CpGisland,TRUE,U11,Tr-P
761,cg12966181,-0.0000702,0.0000101,-6.958961202,2.05E-11,loss,yes,-0.0000222,0.0000171,-1.294413755,0.196485919,neg,ns,-0.013363543,0.00502403,-2.659925048,0.008222245,neg,ns,2.085009589,0.0000488,0.000172776,0.282712433,0.77758596,pos,ns,0.871389798,Arglu1,Arglu1_threeUTR,8,8667295,8667344,8667343,8667344,50,+,TTCCCCTTGCCCAGGATAATTTTTTGTTCTTCTTTTTGTTGACGTTGTCG,3' UTR,8,8665075,8690521,25447,2,Arglu1-201,23177,Arglu1-201;Arglu1-204;Arglu1-203;Arglu1-202,Arglu1;Arglu1;Arglu1;Arglu1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,7,234023,ENSMUSG00000040459,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21550,cg15587600,0.00000668,0.00000776,0.861296018,0.389740726,gain,ns,0.0000171,0.0000132,1.294199417,0.196559833,pos,ns,0.000829349,0.00386293,0.2146942,0.830146907,pos,ns,0.080845046,0.0000332,0.000132846,0.250050555,0.802713877,pos,ns,0.810291083,Zfhx3,Zfhx3_Intron,8,108245604,108245653,108245604,108245605,50,-,CGATTTATAATTAAAGATTTTAATCTGGCTTCACATTGAGTTAATAAGCC,"Intron (Zfhx3-204/Zfhx3, intron 2 of 15)",8,107942644,108961630,1018987,1,Zfhx3-204,302960,Zfhx3-204;Zfhx3-207,Zfhx3;Zfhx3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,114,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16206,cg14812516,0.0000231,0.00000214,10.82383782,2.26E-23,gain,yes,-0.0000047,0.00000363,-1.294132251,0.196583,neg,ns,-0.000397365,0.00106412,-0.37342136,0.709090095,neg,ns,0.149298581,0.00000937,0.0000366,0.256028215,0.79809886,pos,ns,0.039181401,Vsx2,Vsx2_Intron,12,84590133,84590182,84590133,84590134,50,-,CGCTGCCGAGCGTCCCACTCATCACGCCAGCGCCAGACGGCAAGCAATTT,"Intron (Vsx2-201/Vsx2, intron 3 of 4)",12,84569762,84595457,25696,1,Vsx2-201,20371,Vsx2-201;Vsx2-202,Vsx2;Vsx2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,20,12677,ENSMUSG00000021239,conserved gene and region,12,84590042,84590334,293,*,293,26,0.56996587,1.09265634,0.088737201,1.04E-18,CpGisland,TRUE,U2,Pr-W
11780,cg27116965,-0.00000346,0.00000284,-1.21908756,0.223737768,loss,ns,-0.00000623,0.00000482,-1.293906273,0.196660956,neg,ns,0.001202547,0.00141166,0.851867428,0.394945275,pos,ns,0.403463077,-0.000108122,0.0000485,-2.227177743,0.026653245,neg,ns,0.964632143,Cdh23,Cdh23_Intron,10,60608573,60608622,60608621,60608622,50,-,CAAGATTTATGAAACTTGCACTTTTTCTAATGAGATTTATGCAAATGCCG,"Intron (Cdh23-201/Cdh23, intron 2 of 66)",10,60302748,60657333,354586,2,Cdh23-201,48711,Cdh23-201;Cdh23-203;Cdh23-202;Cdh23-204;Cdh23-205;Cdh23-209;Cdh23-210;Cdh23-213,Cdh23;Cdh23;Cdh23;Cdh23;Cdh23;Cdh23;Cdh23;Cdh23,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,14,22295,ENSMUSG00000012819,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5433,cg02187860,-0.00000645,0.00000238,-2.708757942,0.007128834,loss,ns,-0.00000523,0.00000404,-1.293849817,0.196680436,neg,ns,-0.004003593,0.001184722,-3.379352599,0.000819437,neg,ns,3.08648438,0.000131451,0.0000407,3.226378506,0.001387671,pos,ns,0.959962551,Mvb12b,Mvb12b_Intron,2,33941649,33941698,33941649,33941650,50,-,CGCAATCAGTTACTGCATTACAAGGCCGGCGATGAGCTTTTAAATCTTGG,"Intron (Gm13403-201/Gm13403-201, intron 1 of 1)",2,33729953,33887946,157994,2,Mvb12b-201,-53752,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,28,47,72543,ENSMUSG00000038740,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3021,cg05162670,-0.0000209,0.0000096,-2.174539965,0.030420534,loss,ns,-0.0000211,0.0000163,-1.293752916,0.196713874,neg,ns,-0.011882916,0.004780471,-2.485720583,0.013455667,neg,ns,1.871094784,0.000280894,0.0001644,1.708602839,0.088525478,pos,ns,0.156536894,Etv5,Etv5_Intron,16,22438665,22438714,22438665,22438666,50,+,CGACGCAGGCCCCTCACCCCAGCGTTTTAGGAAGAAAGCTCAATGCTTCA,"Intron (Etv5-201/Etv5, intron 1 of 12)",16,22381309,22439719,58411,2,Etv5-201,1005,Etv5-201;Etv5-203;Etv5-202;Etv5-204,Etv5;Etv5;Etv5;Etv5,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,3,104156,ENSMUSG00000013089,conserved gene and region,16,22438629,22438688,60,*,60,7,0.766666667,1.090909091,0.116666667,0.00000466,CpGisland,TRUE,NA,NRS
27695,cg01105418,-0.0000371,0.00000718,-5.162767174,0.000000436,loss,yes,0.0000158,0.0000122,1.293750559,0.196714687,pos,ns,-0.008065809,0.003574337,-2.256588827,0.02473001,neg,ns,1.606775701,0.000298428,0.000122921,2.427798936,0.0157598,pos,ns,0.902034398,Zbtb18,Zbtb18_fiveUTR,1,177444621,177444670,177444669,177444670,50,-,CATCCCTCAGCCTTTTATTCTAACACACAGACAGGGAGTTAGTGTGTGCG,Promoter (<=1kb),1,177444649,177447788,3140,1,Zbtb18-204,0,Zbtb18-209;Zbtb18-211;Zbtb18-208;Zbtb18-203;Zbtb18-202;Zbtb18-204;Zbtb18-206;Zbtb18-210;Zbtb18-205;Zbtb18-212;Zbtb18-207;Zbtb18-201,Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,22,30928,ENSMUSG00000063659,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12902,cg23295280,-0.00000226,0.00000273,-0.827093688,0.408820151,loss,ns,0.000006,0.00000464,1.293685461,0.196737153,pos,ns,0.002580643,0.001358024,1.900292403,0.058322361,pos,ns,1.234164905,-0.0000567,0.0000467,-1.213436313,0.225886786,neg,ns,0.942451583,Zfat,Zfat_Exon,15,68178901,68178950,68178901,68178902,50,-,CGGACATGCATATCAAAATGCACTTGGTACCAAAAAAGTTTGCCTAAAAA,"Exon (Zfat-204/Zfat, exon 7 of 16)",15,68083764,68258856,175093,2,Zfat-204,79906,Zfat-204;Zfat-205;Zfat-202;Zfat-201,Zfat;Zfat;Zfat;Zfat,0;0;0;79897,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,380993,ENSMUSG00000022335,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26654,cg17426166,-0.0000172,0.0000107,-1.60110933,0.110371223,loss,ns,0.0000235,0.0000182,1.293666129,0.196743825,pos,ns,0.020245555,0.005331511,3.79733925,0.000175959,pos,ns,3.754588595,-0.001042203,0.00018335,-5.684220209,3.03E-08,neg,yes,0.127671447,Gm42647,Gm42647_Exon,3,149445245,149445294,149445245,149445246,50,-,CGGCTGTGAACGAGTGACCTCCTCAAGCTGAGTCCTCTCTGTGAACCAGG,"Exon (Gm30382-202/Gm30382-202, exon 1 of 4)",3,149210271,149210729,459,1,Gm42647-201,235023,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,5,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
3263,cg20858664,0.0000011,0.00000178,0.621719767,0.534583096,gain,ns,0.0000039,0.00000302,1.293642734,0.1967519,pos,ns,0.002353052,0.000883703,2.662718458,0.008155847,pos,ns,2.088530907,-0.000085,0.0000304,-2.797896327,0.005465528,neg,ns,0.959330349,Cadps2,Cadps2_Intron,6,23414110,23414159,23414110,23414111,50,+,CGGGTTTATCAAAAGGCAAGCTTTTATGATTGCTTTCATTAATGGTATGT,"Intron (Cadps2-213/Cadps2, intron 12 of 29)",6,23262773,23839137,576365,2,Cadps2-213,424978,Cadps2-213;Cadps2-205;Cadps2-212;Cadps2-201;Cadps2-209;Cadps2-206;Cadps2-207;Cadps2-202;Cadps2-204,Cadps2;Cadps2;Cadps2;Cadps2;Cadps2;Cadps2;Cadps2;Cadps2;Cadps2,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,15,320405,ENSMUSG00000017978,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17837,cg08212358,0.00009,0.0000126,7.145244575,6.46E-12,gain,yes,0.0000277,0.0000214,1.29363222,0.196755529,pos,ns,0.019652422,0.006267294,3.135710639,0.001878727,pos,ns,2.726136415,-0.000746231,0.000215532,-3.462279371,0.000610882,neg,ns,0.466961863,Irx3,Irx3_Intergenic_upstream,8,91993432,91993481,91993432,91993433,50,+,CGACATAACTAGATGTCAAAAGAAGTTTAAGTTGTATGACGAACTGTGAT,Distal Intergenic,8,91798525,91802067,3543,2,Irx3-202,-191365,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,15,36,16373,ENSMUSG00000031734,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27198,cg19654937,0.0000257,0.00000628,4.084093811,0.0000564,gain,ns,0.0000138,0.0000107,1.293621799,0.196759125,pos,ns,0.002073429,0.003126533,0.663171902,0.507713286,pos,ns,0.294381472,0.00000811,0.000107521,0.075409702,0.939937381,pos,ns,0.735531956,Mafb,Mafb_Intergenic_upstream,2,160473507,160473556,160473507,160473508,50,+,CGCTTGAGGCGGCCTCGGATTTAATGGTCAGTGCAATAGATTTACTGTAA,Distal Intergenic,2,160363703,160367065,3363,2,Mafb-201,-106442,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,22,16658,ENSMUSG00000074622,conserved gene and region,2,160473457,160473523,67,*,67,9,0.611940299,1.477941177,0.134328358,2.49E-08,CpGisland,TRUE,U11,Tr-P
8432,cg04836221,0.0000281,0.00000304,9.260802249,3.48E-18,gain,yes,-0.00000667,0.00000516,-1.293593644,0.196768844,neg,ns,-0.000706432,0.001510768,-0.467597653,0.640400876,neg,ns,0.193548082,0.0000851,0.000052,1.637857693,0.102465971,pos,ns,0.049665143,Zeb2,Zeb2_fiveUTR,2,45113169,45113218,45113169,45113170,50,-,CGTGAGCATCATGTGAAAACGTGATCGCCAAGTTTCTCTCTGGGAAAGGA,Promoter (<=1kb),2,45104038,45113216,9179,2,Zeb2-205,0,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219;Zeb2-211;Zeb2-210;Zeb2-205;Zeb2-223;Zeb2-217;Zeb2-225;Zeb2-204;Zeb2-206;Zeb2-230,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;-3093;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,15,158,24136,ENSMUSG00000026872,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
4581,cg11201611,0.000150428,0.0000132,11.41502457,1.98E-25,gain,yes,-0.000029,0.0000224,-1.293527841,0.196791557,neg,ns,0.018372633,0.00655886,2.801193146,0.005411385,pos,ns,2.266691594,-0.000487631,0.000225559,-2.161882721,0.03139215,neg,ns,0.433342647,Urm1,Urm1_Intergenic_downstream,2,29846393,29846442,29846441,29846442,50,-,TGGTACTGGATTTGAATAACGCCACGGGGCCATCAATGGTCATTGTGTCG,Downstream (1-2kb),2,29841648,29844064,2417,1,Urm1-202,4794,Urm1-205;Urm1-206;Urm1-201;Urm1-204;Urm1-202,Urm1;Urm1;Urm1;Urm1;Urm1,26318;19051;19051;19032;4745,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,6,10,68205,ENSMUSG00000069020,mapped to different genes,2,29846021,29846498,478,*,478,42,0.688284519,0.749440048,0.087866109,1.04E-29,CpGisland,TRUE,U11,Tr-P
8245,cg15876728,-0.0000534,0.00000974,-5.4788282,8.87E-08,loss,yes,0.0000214,0.0000166,1.293501328,0.19680071,pos,ns,-0.008381992,0.004849584,-1.728393958,0.084913349,neg,ns,1.071024029,0.000190283,0.000166777,1.140941322,0.254774973,pos,ns,0.847404048,Slf2,Slf2_Intergenic_upstream,19,44900467,44900516,44900515,44900516,50,+,GGGATTTCTCAGGCAATTTGGCCAGTGATGCATGGGGCAGTAGATCCTCG,Distal Intergenic,19,44931151,44983188,52038,1,Slf2-201,-30635,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,15,17,226151,ENSMUSG00000036097,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
15597,cg15845242,0.0000855,0.00000854,10.01577951,1.22E-20,gain,yes,-0.0000188,0.0000145,-1.293377109,0.196843594,neg,ns,0.013120416,0.004251153,3.086319324,0.002209422,pos,ns,2.655721398,-0.000345492,0.000146197,-2.363198242,0.018734923,neg,ns,0.047657486,Zfp804a,Zfp804a_Exon,2,82053818,82053867,82053866,82053867,50,+,TCCACGCATCTCAGCAACGGACACTTTCGCAACATCAAGGGAGTTTTCCG,Promoter (<=1kb),2,82053222,82259879,206658,1,Zfp804a-201,596,Zfp804a-201,Zfp804a,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,9,241514,ENSMUSG00000070866,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
19356,cg22741507,-0.0000206,0.0000164,-1.252899929,0.21118637,loss,ns,0.0000361,0.0000279,1.293223595,0.196896602,pos,ns,-0.012979202,0.008177355,-1.587212762,0.113483889,neg,ns,0.945065791,0.000767046,0.000281219,2.727581389,0.006743662,pos,ns,0.319530788,Foxp1,Foxp1_Intron,6,99095589,99095638,99095589,99095590,50,-,CGTGCGTGTTTCAGCAGTCTGACTTTTATTGGCATGAAATTGGTACAAAT,"Intron (Foxp1-206/Foxp1, intron 3 of 17)",6,98925338,99266515,341178,2,Foxp1-206,170877,Foxp1-206;Foxp1-204;Foxp1-220;Foxp1-201;Foxp1-205;Foxp1-207;Foxp1-208;Foxp1-226;Foxp1-228;Foxp1-221;Foxp1-222;Foxp1-218;Foxp1-223,Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,87,108655,ENSMUSG00000030067,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11742,cg18815647,0.0000183,0.00000399,4.579126329,0.00000677,gain,ns,-0.00000876,0.00000677,-1.293122749,0.19693143,neg,ns,0.006519462,0.001983802,3.286346804,0.001131402,pos,ns,2.946383224,-0.000102366,0.0000682,-1.500467631,0.134511085,neg,ns,0.07661617,Amer2,Amer2_Exon,14,60379330,60379379,60379330,60379331,50,+,CGTATTTGTTTGATGTTTTCTGACGTGACTTCACTGAAAAGCTTTGACTC,"Exon (Amer2-201/Amer2, exon 1 of 1)",14,60373259,60380655,7397,1,Amer2-203,6071,Amer2-203;Amer2-202;Amer2-201;Amer2-204,Amer2;Amer2;Amer2;Amer2,0;6043;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,72125,ENSMUSG00000021986,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
4551,cg20984125,-0.00000406,0.0000015,-2.700688198,0.007299953,loss,ns,0.0000033,0.00000255,1.292784968,0.197048116,pos,ns,0.000638618,0.000748343,0.853375889,0.394109784,pos,ns,0.404382783,-0.0000246,0.0000257,-0.956789393,0.339419119,neg,ns,0.963493315,Cmtr1,Cmtr1_threeUTR,17,29687095,29687144,29687095,29687096,50,+,CGGAATTTTGTCCTGGATAACACAGATCGCAAGGGTGTCCATTTTCTGAT,3' UTR,17,29660595,29705979,45385,1,Cmtr1-201,26500,Ccdc167-205;Cmtr1-201;Cmtr1-217;Cmtr1-214;Cmtr1-211;Cmtr1-203;Cmtr1-204;Cmtr1-205;Cmtr1-202;Cmtr1-208;Cmtr1-209;Cmtr1-207;Gm28043-201,Ccdc167;Cmtr1;Cmtr1;Cmtr1;Cmtr1;Cmtr1;Cmtr1;Cmtr1;Cmtr1;Cmtr1;Cmtr1;Cmtr1;Gm28043,29875;0;0;0;10866;0;7834;0;5919;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,74157,ENSMUSG00000024019,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16972,cg13431363,-0.0000176,0.00000606,-2.903445866,0.0039557,loss,ns,-0.0000133,0.0000103,-1.29275725,0.197057694,neg,ns,-0.003021275,0.003018452,-1.000935262,0.317638757,neg,ns,0.498066512,-0.0000921,0.000103804,-0.887001157,0.375765893,neg,ns,0.938290551,Zfp423,Zfp423_Intron,8,87741230,87741279,87741278,87741279,50,+,TTTGTTAACTGACTGTTGAGTCTAATGTTATACCACTATTCTGCCTCTCG,"Intron (Zfp423-203/Zfp423, intron 3 of 5)",8,87661810,87804439,142630,2,Zfp423-203,63160,Zfp423-203;Zfp423-202;Zfp423-201,Zfp423;Zfp423;Zfp423,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,42,53,94187,ENSMUSG00000045333,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1314,cg24200716,-0.0000113,0.00000872,-1.294104519,0.196592565,loss,ns,0.0000191,0.0000148,1.292661178,0.197090892,pos,ns,-0.014540393,0.004339652,-3.350590058,0.000906103,neg,ns,3.042822544,0.000514085,0.00014924,3.444680777,0.000650482,pos,ns,0.129147767,Fezf2,Fezf2_Exon,14,12342594,12342643,12342642,12342643,50,-,TTCTGCAAAACCCTTTGCCGCAAGTGGCGCACGTGAAAGGCTTCTTGTCG,"Exon (Fezf2-203/Fezf2, exon 4 of 4)",14,12342094,12345844,3751,2,Fezf2-203,3201,Fezf2-203;Fezf2-201;Fezf2-202,Fezf2;Fezf2;Fezf2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,45,54713,ENSMUSG00000021743,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
164,cg06096603,0.0000371,0.0000127,2.9280052,0.00366409,gain,ns,-0.0000278,0.0000215,-1.292633783,0.197100359,neg,ns,-0.013819942,0.006311838,-2.189527341,0.029303714,neg,ns,1.53307734,0.000237194,0.000217064,1.092737858,0.275357365,pos,ns,0.624836259,Gria4,Gria4_Exon,9,4432763,4432812,4432811,4432812,50,-,TGAGGCTAACCTTGGAGTCACCTCCCCCGCTGCCACATTCTCCTTTGTCG,"Exon (Gria4-204/Gria4, exon 14 of 16)",9,4417896,4796142,378247,2,Gria4-202,363330,Gria4-202;Gria4-204;Gria4-201,Gria4;Gria4;Gria4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,16,18,14802,ENSMUSG00000025892,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26774,cg17498565,0.00000857,0.00000973,0.881009894,0.378994995,gain,ns,0.0000214,0.0000165,1.292624751,0.197103481,pos,ns,-0.001752388,0.004842786,-0.361855288,0.717706701,neg,ns,0.144052999,-0.00000654,0.000166543,-0.039264465,0.968704811,neg,ns,0.880300144,Iqsec2,Iqsec2_Exon,X,152222281,152222330,152222329,152222330,50,-,AGGGAAGCGGGGGCGGCGTAACAGCGTGGGATCGCTGGACAGCACCATCG,"Exon (Iqsec2-207/Iqsec2, exon 14 of 15)",20,152144268,152225235,80968,1,Iqsec2-207,78013,Iqsec2-207;Iqsec2-202;Iqsec2-203;Iqsec2-201,Iqsec2;Iqsec2;Iqsec2;Iqsec2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,16,245666,ENSMUSG00000041115,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9811,cg04900296,0.0000191,0.00000456,4.192652836,0.000036,gain,ns,0.00001,0.00000775,1.29260847,0.197109107,pos,ns,0.007172153,0.002271671,3.157214532,0.001749557,pos,ns,2.757071789,-0.000209124,0.0000781,-2.676873531,0.007826747,neg,ns,0.876240607,Sik2,Sik2_Exon,9,50913478,50913527,50913478,50913479,50,+,CGCTCCACCAACAAGAAATAAATGGCAGCAAAGTGGTTATAGCTCTTGTT,"Exon (Sik2-205/Sik2, exon 8 of 16)",9,50892801,51008936,116136,2,Sik2-205,95409,Sik2-205;Sik2-206;Sik2-204;Sik2-201,Sik2;Sik2;Sik2;Sik2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,235344,ENSMUSG00000037112,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24901,cg22012408,-0.00000114,0.000000651,-1.755176748,0.080216842,loss,ns,0.00000143,0.00000111,1.292564154,0.197124424,pos,ns,0.0000201,0.000323845,0.062220577,0.950427273,pos,ns,0.02208111,-0.00000332,0.0000111,-0.298345457,0.765639386,neg,ns,0.024061624,Zbtb8a,Zbtb8a_fiveUTR,4,129377849,129377898,129377849,129377850,50,-,CGCCCTAAAACAAGTAGCCCCAACGTGAGAGAAACAAAAGGTATTTGCTG,Promoter (<=1kb),4,129353628,129378116,24489,2,Zbtb8a-201,218,Gm12980-201;Zbtb8a-201,Gm12980;Zbtb8a,-1946;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,5,73680,ENSMUSG00000028807,conserved gene and region,4,129377047,129378041,995,*,995,129,0.712562814,1.024152624,0.129648241,6.09E-114,CpGisland,TRUE,NA,NRS
12441,cg02805342,0.0000732,0.000006,12.21184034,2.87E-28,gain,yes,-0.0000132,0.0000102,-1.29237666,0.197189234,neg,ns,0.013084865,0.002984548,4.384203172,0.000016,pos,ns,4.796902837,-0.00026859,0.000102638,-2.616862271,0.009309162,neg,ns,0.085215164,Onecut2,Onecut2_Promoter,18,64338586,64338635,64338634,64338635,50,-,TCTTTAAACAAAGGCAACATCTGCGCAACCTCAGCTAGCTTGAATCTTCG,Promoter (1-2kb),18,64340020,64400987,60968,1,Onecut2-201,-1434,Onecut2-201,Onecut2,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,19,225631,ENSMUSG00000045991,conserved gene and region,18,64338609,64338705,97,*,97,8,0.525773196,1.193846154,0.082474227,0.00000927,CpGisland,TRUE,NA,NRS
16343,cg15961679,0.0000152,0.00000238,6.378929208,6.48E-10,gain,yes,-0.00000522,0.00000404,-1.292366245,0.197192835,neg,ns,-0.00193976,0.00118413,-1.638130976,0.102408925,neg,ns,0.989662193,0.000016,0.0000407,0.392266963,0.695130526,pos,ns,0.045775914,Rfx4,Rfx4_fiveUTR,10,84756449,84756498,84756497,84756498,50,+,CTGTGCTGTCCATGGGAAGAGCATGCATTGTGGGTTACTGGAGGAACCCG,Promoter (<=1kb),10,84756062,84906144,150083,1,Rfx4-202,387,Rfx4-202,Rfx4,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,7,13,71137,ENSMUSG00000020037,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1448,cg27151102,0.000272451,0.0000207,13.14547946,1.13E-31,gain,yes,0.0000455,0.0000352,1.292208001,0.197247547,pos,ns,-0.013089798,0.010315467,-1.268948692,0.205411307,neg,ns,0.687375654,0.001311035,0.000354748,3.695679578,0.000259214,pos,ns,0.667114128,C1ql3,C1ql3_Exon,2,13010250,13010299,13010298,13010299,50,+,CCGCGCTCACCTGGTTGTTTTTGCAGAGATCAGCCCACATGCTGGTGCCG,"Exon (C1ql3-201/C1ql3, exon 1 of 2)",2,13003457,13011806,8350,2,C1ql3-201,1507,C1ql3-201,C1ql3,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,9,227580,ENSMUSG00000049630,conserved gene and region,2,13010298,13010656,359,*,359,37,0.679665738,0.892494793,0.103064067,6.15E-29,CpGisland,TRUE,U3,Pr-B
20645,cg17659647,0.000000583,0.00000431,0.135234175,0.892514494,gain,ns,-0.00000947,0.00000733,-1.292200556,0.197250122,neg,ns,-0.004864165,0.002146983,-2.265581217,0.024166623,neg,ns,1.61678404,0.000104591,0.0000738,1.416565171,0.157614178,pos,ns,0.049839139,Adamts6,Adamts6_Promoter,13,104288633,104288682,104288681,104288682,50,-,CAGATGCCAACTGTCTGGGTCACACGCGTTTTATCCAAATAGATTTAGCG,Promoter (<=1kb),13,104287835,104496695,208861,1,Adamts6-207,798,Adamts6-207;Adamts6-202;Adamts6-201;Adamts6-206,Adamts6;Adamts6;Adamts6;Adamts6,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,6,31,108154,ENSMUSG00000046169,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
18812,cg10820947,0.00000193,0.00000442,0.435823748,0.663267935,gain,ns,-0.0000097,0.00000751,-1.292037905,0.19730637,neg,ns,-0.011214065,0.002198797,-5.100092047,0.000000592,neg,ns,6.227459862,0.000248146,0.0000756,3.281635056,0.001149823,pos,ns,0.896021859,Gk2,Gk2_Intron,5,97565667,97565716,97565667,97565668,50,+,CGGAGCAAATCTGGCCCAGAAGGCTGCACATATTTTTGCCTGGATAGACT,"Intron (4930467D21Rik-202/4930467D21Rik-202, intron 4 of 4)",5,97455142,97457021,1880,2,Gk2-201,-108646,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,13,14626,ENSMUSG00000050553,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26962,cg09366960,0.000016,0.00000446,3.575867354,0.000404775,gain,ns,-0.00000979,0.00000758,-1.291981895,0.197325742,neg,ns,0.000772881,0.002220306,0.348096692,0.728003825,pos,ns,0.137866339,0.00000209,0.0000764,0.027315339,0.978225798,pos,ns,0.915526884,Myh7b,Myh7b_Exon,2,155615413,155615462,155615461,155615462,50,-,GGCCGGTAAGACGGTTAACACCAAGCGGGTCATTCAGTACTTTGCCATCG,"Exon (Myh7b-201/Myh7b, exon 7 of 42)",2,155611212,155634307,23096,1,Myh7b-201,4201,Myh7b-201,Myh7b,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,6,668940,ENSMUSG00000074652,conserved gene and region,2,155615401,155615515,115,*,115,11,0.626086957,0.98828125,0.095652174,1.73E-08,CpGisland,TRUE,U11,Tr-P
22655,cg12681193,0.0000339,0.0000111,3.06650582,0.002356543,gain,ns,0.0000243,0.0000188,1.291839636,0.197374952,pos,ns,0.001238151,0.005506657,0.224846295,0.822246987,pos,ns,0.084997709,0.000110937,0.000189373,0.585810378,0.558429187,pos,ns,0.372958488,Sox6,Sox6_Intron,7,115625079,115625128,115625079,115625080,50,+,CGTGTTGGACAAAATGGGCCATTCATTGTGTTCCCCTGGGAATGCCTGGA,"Intron (Sox6-210/Sox6, intron 7 of 15)",7,115470872,116031047,560176,2,Sox6-210,405919,Sox6-210;Sox6-201;Sox6-202;Sox6-204;Sox6-205;Sox6-203;Sox6-212;Sox6-206;Sox6-209;Sox6-214;Sox6-207;Sox6-213,Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,37,57,20679,ENSMUSG00000051910,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27307,cg08684550,0.00000441,0.00000651,0.677381852,0.498668911,gain,ns,-0.0000143,0.0000111,-1.291727136,0.197413874,neg,ns,-0.003952437,0.00324228,-1.219030315,0.223759463,neg,ns,0.65021859,0.000105338,0.000111502,0.944723734,0.345535667,pos,ns,0.763390897,Rpsa-ps1,Rpsa-ps1_Intergenic_upstream,1,163574923,163574972,163574971,163574972,50,-,GAGTGTTTGATATTTTCCACTCTGCGTGTCAAGGGCATTTACAGTCGGCG,Distal Intergenic,1,163623793,163624678,886,1,Rpsa-ps1-201,-48870,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,4,665237,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14228,cg22746470,-0.00000779,0.0000116,-0.671605226,0.502335215,loss,ns,0.0000255,0.0000197,1.291708091,0.197420463,pos,ns,-0.000363498,0.005772651,-0.062969018,0.949831757,neg,ns,0.022353314,0.0000458,0.000198521,0.230483484,0.817868122,pos,ns,0.737522201,Onecut1,Onecut1_Exon,9,74854991,74855040,74855039,74855040,50,+,CATTACAGTAGCTTGGATTTGCTTTTAATTCATATTTAAAGCTGCAACCG,Promoter (6-7kb),9,74861921,74891781,29861,1,Onecut1-201,-6881,NA,NA,NA,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,16,28,15379,ENSMUSG00000043013,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
16530,cg03267882,0.000120099,0.00000862,13.9398052,1.27E-34,gain,yes,-0.0000189,0.0000146,-1.291651575,0.197440019,neg,ns,-0.003811342,0.004288042,-0.888830471,0.374783362,neg,ns,0.426219697,0.000335508,0.000147465,2.27516463,0.023578546,pos,ns,0.173852049,Btbd11,Btbd11_Exon,10,85387526,85387575,85387574,85387575,50,+,TGACACTGTCAACACTGCCCTGGTGGAAGACTCCGAGGGGCTGGACTGCG,Promoter (<=1kb),10,85386814,85660292,273479,1,Btbd11-203,712,Btbd11-203;Btbd11-201,Btbd11;Btbd11,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,13,13,74007,ENSMUSG00000020042,conserved gene and region,10,85387046,85387614,569,*,569,49,0.65202109,0.810258646,0.086115993,4.08E-34,CpGisland,TRUE,U3,Pr-B
27868,cg01918956,-0.00000168,0.00000351,-0.479055057,0.632237202,loss,ns,-0.00000771,0.00000597,-1.291632673,0.197446559,neg,ns,-0.004757289,0.001748025,-2.721522761,0.006865534,neg,ns,2.163325676,0.000174362,0.0000601,2.900497802,0.003992093,pos,ns,0.916133977,Ush2a,Ush2a_Intron,1,188884538,188884587,188884538,188884539,50,+,CGTCAAGACGCATAGCTCATTATGAAACAGTTATCAAGGATACATGAAAA,"Intron (Ush2a-201/Ush2a, intron 60 of 70)",1,188263034,188965041,702008,1,Ush2a-201,621504,Ush2a-201,Ush2a,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,33,36,22283,ENSMUSG00000026609,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20668,cg11127743,-0.0000036,0.00000273,-1.321360346,0.187355642,loss,ns,0.00000598,0.00000463,1.291584871,0.197463102,pos,ns,0.003874142,0.001357298,2.854304969,0.004603658,pos,ns,2.336896987,-0.000118951,0.0000467,-2.548361235,0.011305091,neg,ns,0.942278985,Dync1li2,Dync1li2_threeUTR,8,104420583,104420632,104420631,104420632,50,-,CAGGCTTCATTTTCTGTTGAAGAGTTTGTTACCATAGAGTCTGGCTTTCG,3' UTR,8,104417680,104443047,25368,2,Dync1li2-201,22415,Dync1li2-201;Dync1li2-206;Dync1li2-205;Dync1li2-207,Dync1li2;Dync1li2;Dync1li2;Dync1li2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,2,234663,ENSMUSG00000035770,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19428,cg15217416,0.000101632,0.00000913,11.12884479,1.99E-24,gain,yes,-0.00002,0.0000155,-1.291582309,0.197463988,neg,ns,0.000706088,0.004545252,0.155346307,0.876649412,pos,ns,0.057174054,0.00000646,0.000156311,0.041353954,0.967040342,pos,ns,0.504791197,Gm12689,Gm12689_Promoter,4,99295237,99295286,99295237,99295238,50,-,CGTGTCTTCATTGCCTTTCATCATAGTTAGTCTGAGCAAATATGGTGGAA,Promoter (<=1kb),4,99295900,99297258,1359,1,Gm12689-201,-663,Gm12689-201,Gm12689,-614,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,7,26,100137011,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27065,cg12877659,-0.0000537,0.0000162,-3.31997307,0.001007686,loss,ns,-0.0000355,0.0000275,-1.291528574,0.197482584,neg,ns,0.000210825,0.008057023,0.026166626,0.979141271,pos,ns,0.009154643,-0.000805108,0.00027708,-2.905683668,0.003928278,neg,ns,0.637972153,Blcap,Blcap_Exon,2,157561200,157561249,157561248,157561249,50,+,TATTTCCTTCAAGGTGTTCCTGGAATGCTGCATTTACTGGGTAGGATTCG,"Exon (Nnat-208/Nnat, exon 2 of 3)",2,157556362,157566337,9976,2,Blcap-202,5088,Blcap-202;Blcap-201;Blcap-205;Blcap-204;Blcap-203;Nnat-205;Nnat-208;Nnat-202;Nnat-210;Nnat-207;Nnat-209;Nnat-206;Nnat-201;Nnat-204;Nnat-203,Blcap;Blcap;Blcap;Blcap;Blcap;Nnat;Nnat;Nnat;Nnat;Nnat;Nnat;Nnat;Nnat;Nnat;Nnat,0;0;0;0;5082;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,9,53619,ENSMUSG00000067787,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7570,cg09286000,0.0000902,0.00000838,10.76698282,3.54E-23,gain,yes,-0.0000184,0.0000142,-1.291494747,0.197494292,neg,ns,0.017060353,0.004169075,4.092119217,0.0000546,pos,ns,4.263116268,-0.000473431,0.000143374,-3.302069275,0.001071897,neg,ns,0.811581982,Zbtb20,Zbtb20_Intron,16,43278011,43278060,43278011,43278012,50,+,CGATAATGTGCTACAGGAAATGGCCAAGTATAAAAGCAATAAAATAAATT,"Intron (Zbtb20-209/Zbtb20, intron 5 of 7)",16,42875881,43463175,587295,1,Zbtb20-209,402130,Zbtb20-209;Zbtb20-211;Zbtb20-217;Zbtb20-218;Zbtb20-204;Zbtb20-215;Zbtb20-212;Zbtb20-201;Zbtb20-203,Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,98,56490,ENSMUSG00000022708,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21186,cg18814137,0.000057,0.00000554,10.28356977,1.55E-21,gain,yes,-0.0000122,0.00000941,-1.291401491,0.19752657,neg,ns,0.009025324,0.00275725,3.273306111,0.001183069,pos,ns,2.926989924,-0.000298408,0.0000948,-3.147042574,0.0018096,neg,ns,0.075585294,Mpped2,Mpped2_Intergenic_upstream,2,106650404,106650453,106650452,106650453,50,+,CAGTGACCTTGCTGAGTCGAAGCTGATTGGTGGTGTCAGCCTTGTCAACG,Distal Intergenic,2,106693269,106868356,175088,1,Mpped2-202,-42816,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,33,77015,ENSMUSG00000016386,conserved gene and region,2,106650342,106650531,190,*,190,11,0.547368421,0.791666667,0.057894737,0.00000285,CpGisland,TRUE,U2,Pr-W
492,cg05141473,0.00000661,0.00000693,0.954528877,0.340559719,gain,ns,-0.0000152,0.0000118,-1.291241355,0.197582005,neg,ns,-0.005608731,0.003447704,-1.626801737,0.104795214,neg,ns,0.97965855,0.0000684,0.000118566,0.577204397,0.564220327,pos,ns,0.544180469,Celf2,Celf2_threeUTR,2,6547114,6547163,6547114,6547115,50,-,CGCTTCAGCTGCACCTTCAAGCGTTTCATGCCGATCTGAAAGCCATTCAT,3' UTR,2,6539694,7396000,856307,2,Celf2-201,848837,Celf2-201;Celf2-202;Celf2-204;Celf2-214;Celf2-206;Celf2-226;Celf2-223;Celf2-224;Celf2-221;Celf2-205;Celf2-211;Celf2-213;Celf2-225;Celf2-228;Celf2-216,Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,24,14007,ENSMUSG00000002107,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5374,cg25829532,0.00000884,0.00000152,5.809903546,1.55E-08,gain,yes,-0.00000334,0.00000258,-1.291229771,0.197586016,neg,ns,0.001004555,0.000757083,1.326875896,0.185526257,pos,ns,0.731594617,-0.000000924,0.000026,-0.03549258,0.971709806,neg,ns,0.014654413,Lmx1b,Lmx1b_Exon,2,33639535,33639584,33639583,33639584,50,+,AGCTGGTGGTGAGGGCTTGCTGACACGCCGCGCACTGCAAACACTCCTCG,"Exon (Lmx1b-201/Lmx1b, exon 2 of 8)",2,33560965,33640608,79644,2,Lmx1b-201,1024,Lmx1b-201;Lmx1b-203;Lmx1b-204,Lmx1b;Lmx1b;Lmx1b,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,26,16917,ENSMUSG00000038765,conserved gene and region,2,33639200,33640032,833,*,833,76,0.673469388,0.805752832,0.091236495,1.56E-54,CpGisland,TRUE,U3,Pr-B
20211,cg15802836,-0.00000564,0.00000238,-2.371514622,0.018326101,loss,ns,0.00000522,0.00000404,1.291206867,0.197593946,pos,ns,0.000887266,0.001184284,0.749200471,0.454304502,pos,ns,0.342652959,-0.00000385,0.0000407,-0.09451304,0.924762685,neg,ns,0.049797484,Unc79,Unc79_Promoter,12,102949628,102949677,102949676,102949677,50,-,CAGCTGCGGCGTTTGCGGCTGCTGGGAGACCTTGGCATTGTGCTGGTGCG,Promoter (<=1kb),12,102948859,103184001,235143,1,Unc79-202,769,Unc79-202;Unc79-208,Unc79;Unc79,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,1,24,217843,ENSMUSG00000021198,conserved gene but different region,12,102949567,102949769,203,*,203,20,0.738916256,0.848662207,0.098522168,1.99E-15,CpGisland,TRUE,NA,NRS
4300,cg21364266,0.0000064,0.00000439,1.458182152,0.145802698,gain,ns,-0.00000962,0.00000745,-1.290905184,0.197698418,neg,ns,-0.001877522,0.002183163,-0.860000647,0.390453272,neg,ns,0.408430933,0.0000451,0.0000751,0.601334021,0.548056999,pos,ns,0.90062796,Erc2,Erc2_Intron,14,28252569,28252618,28252569,28252570,50,-,CGTTTAATTTAAAAAATTGCTGTTTCCTACAAGAGGGAGCTATTTTTCAC,"Intron (Erc2-205/Erc2, intron 16 of 19)",14,27622428,28478535,856108,1,Erc2-205,630141,Erc2-205;Erc2-201;Erc2-210;Erc2-208;Erc2-204,Erc2;Erc2;Erc2;Erc2;Erc2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,14,17,238988,ENSMUSG00000040640,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11525,cg07905650,-0.0000289,0.0000124,-2.335918401,0.020132777,loss,ns,-0.0000271,0.000021,-1.290859164,0.197714358,neg,ns,-0.018450166,0.006147223,-3.001381987,0.002905927,neg,ns,2.53671531,0.00056439,0.000211403,2.669741232,0.007991046,pos,ns,0.795367411,Shtn1,Shtn1_Intron,19,58979770,58979819,58979818,58979819,50,-,ATGCCAAGTTCATTTCTATTTCACTTCTGAGGTAACTATCTTTCAAATCG,"Intron (Shtn1-202/Shtn1, intron 14 of 14)",19,58973356,59076069,102714,2,Shtn1-202,96250,Shtn1-202;Shtn1-201,Shtn1;Shtn1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,10,71653,ENSMUSG00000041362,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15896,cg05774801,0.00000712,0.00000327,2.181857437,0.029870746,gain,ns,0.00000716,0.00000555,1.290824516,0.197726359,pos,ns,0.000109683,0.00162521,0.06748848,0.946236339,pos,ns,0.024000377,0.00013809,0.0000559,2.470713895,0.014021972,pos,ns,0.026701299,Sfrp2,Sfrp2_Exon,3,83766724,83766773,83766772,83766773,50,-,CAACCTGCTGGGCCACGAGACCATGAAGGAGGTGCTGGAGCAGGCCGGCG,Promoter (<=1kb),3,83766321,83774316,7996,1,Sfrp2-201,403,Sfrp2-201;Sfrp2-202;Sfrp2-203,Sfrp2;Sfrp2;Sfrp2,0;0;-80,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,20319,ENSMUSG00000027996,conserved gene and region,3,83766337,83767061,725,*,725,73,0.686896552,0.872888904,0.100689655,9.57E-56,CpGisland,TRUE,U3,Pr-B
2208,cg02431008,0.000116057,0.0000104,11.19056566,1.21E-24,gain,yes,-0.0000227,0.0000176,-1.290702395,0.197768666,neg,ns,0.017030764,0.005161754,3.299414331,0.001081737,pos,ns,2.965878366,-0.000692352,0.000177512,-3.900304487,0.000117832,neg,ns,0.169163344,Gp1bb,Gp1bb_Exon,16,18608308,18608357,18608356,18608357,50,+,GCTCGGGCTCCAGAAACATTTGCTTTAAGTCTTAAAATATCAGGTTCCCG,"Exon (4930588K23Rik-201/4930588K23Rik-201, exon 2 of 2)",16,18620317,18621640,1324,2,Gp1bb-202,13283,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,14724,ENSMUSG00000050761,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1963,cg19917435,0.00000216,0.00000586,0.368702843,0.712600902,gain,ns,-0.0000129,0.00000996,-1.29067114,0.197779494,neg,ns,0.001535263,0.002918541,0.526038071,0.599237869,pos,ns,0.222400749,-0.000156143,0.000100368,-1.555703431,0.120798918,neg,ns,0.869861505,Tfec,Tfec_Intergenic_downstream,6,16636208,16636257,16636208,16636209,50,-,CGCTGGATTGAATACTAGATTACTCCAAAGTGGCTGAGGGTCAGGGATCA,Distal Intergenic,6,16834692,16835263,572,2,Tfec-204,199055,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,19,23,21426,ENSMUSG00000029553,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25713,cg17492008,0.00000208,0.00000163,1.276525226,0.202725362,gain,ns,-0.00000357,0.00000277,-1.290637684,0.197791086,neg,ns,0.000127361,0.000810904,0.157060073,0.875299747,pos,ns,0.057843197,-0.0000128,0.0000279,-0.458085649,0.647211844,neg,ns,0.963033525,Lmo3,Lmo3_Intron,6,138560897,138560946,138560945,138560946,50,+,ATGCTGTCTTACACACTGTCATACTGTAAAATGTCCCCTCTTTATTACCG,"Intron (Lmo3-204/Lmo3, intron 1 of 4)",6,138362918,138581968,219051,2,Lmo3-204,21022,Lmo3-204,Lmo3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,38,109593,ENSMUSG00000030226,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17144,cg15197222,-0.000000927,0.00000223,-0.414907522,0.678496594,loss,ns,-0.0000049,0.0000038,-1.290430303,0.197862949,neg,ns,-0.000173434,0.00111236,-0.155915175,0.876201364,neg,ns,0.057396075,-0.0000775,0.0000383,-2.026116691,0.043608911,neg,ns,0.931745302,Syt11,Syt11_Exon,3,88748791,88748840,88748791,88748792,50,+,CGGTGATATCCATCTTCGGCAAGTGTCTGGCTTTGAGGACCACCACTGTC,"Exon (Syt11-202/Syt11, exon 2 of 3)",3,88744700,88752051,7352,2,Syt11-202,3211,Syt11-202;Syt11-203;Syt11-201;Syt11-205,Syt11;Syt11;Syt11;Syt11,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,229521,ENSMUSG00000068923,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19041,cg13322472,-0.0000196,0.00000455,-4.307229882,0.0000222,loss,ns,0.00000996,0.00000772,1.290292979,0.197910547,pos,ns,0.000701425,0.002262256,0.310055466,0.75672711,pos,ns,0.121060707,-0.00018997,0.0000778,-2.441817078,0.015172275,neg,ns,0.899353264,Gm46477,Gm46477_Promoter,14,98280467,98280516,98280467,98280468,50,-,CGTTCTCTAAGTAGGCTTTTCAGTTTGCCTGTGGGGAAATTTAATATAAA,Promoter (6-7kb),14,98273849,98274269,421,2,Gm46477-201,-6247,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,1,108168193,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20895,cg14396426,0.0000113,0.00000583,1.932359318,0.054226037,gain,ns,0.0000128,0.0000099,1.28994833,0.198030042,pos,ns,0.004899952,0.002899754,1.689781831,0.092075033,pos,ns,1.035858116,-0.0000699,0.0000997,-0.700874516,0.483907065,neg,ns,0.098178522,Pax6,Pax6_Exon,2,105684895,105684944,105684895,105684896,50,-,CGGATGTGTGAGTAAAATTCTGGGCAGGTATTACGAGACTGGCTCCATCA,"Exon (Pax6-206/Pax6, exon 6 of 13)",2,105668900,105697364,28465,1,Pax6-206,15995,Pax6-206;Pax6-207;Pax6-210;Pax6-214;Pax6-208;Pax6-202;Pax6-205;Pax6-225;Pax6-204;Pax6-201;Pax6-203;Pax6-224;Pax6-219;Pax6-221;Pax6-213;Pax6-211;Pax6-222;Pax6-212;Pax6-215;Pax6-223;Pax6-209;Pax6-216,Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,31,78,18508,ENSMUSG00000027168,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
5252,cg18560921,0.00000874,0.0000128,0.680010655,0.49700521,gain,ns,0.0000281,0.0000218,1.28972859,0.198106256,pos,ns,-0.003320428,0.006394279,-0.519280965,0.603935361,neg,ns,0.219009541,0.000430724,0.000219899,1.958736928,0.051039891,pos,ns,0.83343158,Tlx3,Tlx3_Intergenic_downstream,11,33192647,33192696,33192647,33192648,50,-,CGGTAAGTACCACTTTACTGTTCATAAGAATTGCAGAGCAATGGTGCTGA,Distal Intergenic,11,33200752,33203589,2838,2,Tlx3-201,10942,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,20,27140,ENSMUSG00000040610,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
19139,cg01981632,0.0000306,0.00000324,9.437600395,9.45E-19,gain,yes,-0.00000709,0.0000055,-1.289537893,0.198172415,neg,ns,-0.000198454,0.001611202,-0.123171483,0.902051124,neg,ns,0.044768848,-0.0000265,0.0000554,-0.477711434,0.633192263,neg,ns,0.093622119,Cacnb3,Cacnb3_fiveUTR,15,98632469,98632518,98632517,98632518,50,-,AGCCTGGTCTATGTCTTTTTCTGACTCCAGTGCAACCTTCCTGCTGAACG,5' UTR,15,98630840,98639516,8677,1,Cacnb3-203,1629,Cacnb3-203;Cacnb3-207;Cacnb3-202;Cacnb3-204;Cacnb3-201;Cacnb3-206,Cacnb3;Cacnb3;Cacnb3;Cacnb3;Cacnb3;Cacnb3,0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,3,12297,ENSMUSG00000003352,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
11652,cg03861659,-0.0000106,0.00000843,-1.2532333,0.21106522,loss,ns,-0.0000185,0.0000143,-1.289378686,0.198227662,neg,ns,-0.008960735,0.004195444,-2.135825435,0.033476895,neg,ns,1.475254831,0.000126652,0.000144281,0.8778175,0.38072258,pos,ns,0.666400233,Gm18161,Gm18161_Intergenic_downstream,19,59631025,59631074,59631025,59631026,50,-,CGTTTGGGTAAATTAGTTTGTCTGTGTTATTAATGGAAGAAGTTATTAAA,Distal Intergenic,19,59540451,59540978,528,1,Gm18161-201,90623,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,8,100416590,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18054,cg19432684,-0.000000903,0.00000174,-0.519729692,0.603622895,loss,ns,-0.00000381,0.00000295,-1.289369414,0.198230879,neg,ns,-0.001112713,0.000864904,-1.286515618,0.199223107,neg,ns,0.700660291,-0.00000755,0.0000297,-0.253878992,0.799757348,neg,ns,0.960922854,Pphln1,Pphln1_Exon,15,93420464,93420513,93420464,93420465,50,+,CGAAGAAGTGGTCCACCTCACAGAGGAGTATGTAAATTTCCCCCATGTAC,"Exon (Pphln1-201/Pphln1, exon 3 of 10)",15,93398350,93489308,90959,1,Pphln1-203,22114,Pphln1-203;Pphln1-201;Pphln1-202;Pphln1-205;Pphln1-204;Pphln1-207,Pphln1;Pphln1;Pphln1;Pphln1;Pphln1;Pphln1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,223828,ENSMUSG00000036167,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19093,cg25018623,-0.00000379,0.00000129,-2.940283467,0.00352579,loss,ns,-0.00000283,0.00000219,-1.289295855,0.198256409,neg,ns,0.001538344,0.00064225,2.395240563,0.017202584,pos,ns,1.764406302,-0.0000655,0.0000221,-2.964038589,0.00327168,neg,ns,0.042903284,Ppp1r1b,Ppp1r1b_Promoter,11,98342438,98342487,98342438,98342439,50,+,CGATTTATTAAGCAGTCACGGAAAAATTGGTTTATAAATTAACAGCTGTT,Promoter (5-6kb),11,98348404,98357796,9393,1,Ppp1r1b-201,-5917,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,16,16,19049,ENSMUSG00000061718,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
12489,cg00317287,-0.00000349,0.00000365,-0.95519848,0.340221597,loss,ns,0.00000799,0.0000062,1.289178033,0.198297306,pos,ns,0.00361034,0.001816062,1.988005078,0.047690449,pos,ns,1.321568588,-0.000189675,0.0000625,-3.037018056,0.002592246,neg,ns,0.924996828,Gm13576,Gm13576_Intergenic_upstream,2,64653430,64653479,64653430,64653431,50,+,CGGCTGCATAAACTAGATGCATGTCAGCACTAAATTTAATTATTGATCAC,Distal Intergenic,2,64569863,64570640,778,2,Gm13576-201,-82790,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,4,620544,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21634,cg19339874,0.000000703,0.00000236,0.298508815,0.765514839,gain,ns,0.00000516,0.000004,1.2890452,0.198343421,pos,ns,0.00204706,0.001172961,1.745208025,0.081939516,pos,ns,1.086506606,-0.0000138,0.0000403,-0.341712729,0.732798615,neg,ns,0.939084473,Degs2,Degs2_Exon,12,108683347,108683396,108683395,108683396,50,+,GAACCCCGTCTGTGGCAAAGAGCCCCGAAGCTAAGAGCCCCCTTCAGTCG,"Exon (Evl-201/Evl, exon 11 of 14)",12,108678711,108692183,13473,2,Degs2-203,8787,Degs2-203;Degs2-202;Evl-202;Evl-201;Evl-203;Evl-206;Evl-204;Evl-205;Evl-207,Degs2;Degs2;Evl;Evl;Evl;Evl;Evl;Evl;Evl,0;18901;0;0;0;0;0;0;-2701,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,70059,ENSMUSG00000021263,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6195,cg11832532,0.000000458,0.00000562,0.081478962,0.935113635,gain,ns,-0.0000123,0.00000954,-1.288887095,0.19839832,neg,ns,0.011416723,0.002794773,4.085027421,0.0000562,pos,ns,4.250523977,-0.000334046,0.0000961,-3.475589722,0.000582442,neg,ns,0.095353222,Pura,Pura_Exon,18,36287833,36287882,36287881,36287882,50,+,TGTGGACAACAAGCGCTTCTTCTTCGATGTGGGCTCCAACAAGTACGGCG,"Exon (Pura-201/Pura, exon 2 of 2)",18,36281097,36292535,11439,1,Pura-201,6736,Pura-201,Pura,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,13,19,19290,ENSMUSG00000043991,conserved gene and region,18,36286687,36288029,1343,*,1343,129,0.68652271,0.823041768,0.096053611,4.14E-95,CpGisland,TRUE,U4,Pr-F
12105,cg14590188,0.00000601,0.00000115,5.201954954,0.000000359,gain,yes,0.00000253,0.00000196,1.288847161,0.198412188,pos,ns,0.000165946,0.000574672,0.288766879,0.772952779,pos,ns,0.111847037,0.00000921,0.0000198,0.465776806,0.641702344,pos,ns,0.032631189,Zfp618,Zfp618_Promoter,4,62966182,62966231,62966230,62966231,50,-,TTTTTTTCTAATTTTTCTTCAAACGGTAGTTTTTTCCCATTAAAACGACG,Promoter (<=1kb),4,62965573,63115748,150176,1,Zfp618-201,609,Zfp618-201;Zfp618-203;Zfp618-202,Zfp618;Zfp618;Zfp618,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,2,12,72701,ENSMUSG00000028358,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
20043,cg12861222,-0.0000153,0.0000318,-0.481226743,0.630694848,loss,ns,-0.0000696,0.000054,-1.288730455,0.198452721,neg,ns,-0.014200541,0.015821881,-0.897525446,0.370135112,neg,ns,0.431639714,0.000508176,0.000544113,0.93395272,0.351055169,pos,ns,0.701141882,Ubtf,Ubtf_Exon,11,102310909,102310958,102310909,102310910,50,+,CGCAGCGGAAGCCTAACCTCGTACTCCTTCCGCTGCTCCAGGGCCTTATG,"Exon (Ubtf-210/Ubtf, exon 8 of 21)",11,102304560,102319096,14537,2,Ubtf-210,8138,Ubtf-210;Ubtf-213;Ubtf-202;Ubtf-203;Ubtf-204;Ubtf-201;Ubtf-205;Ubtf-206;Ubtf-209;Ubtf-212;Ubtf-211;Ubtf-208;Ubtf-207,Ubtf;Ubtf;Ubtf;Ubtf;Ubtf;Ubtf;Ubtf;Ubtf;Ubtf;Ubtf;Ubtf;Ubtf;Ubtf,0;0;0;0;0;0;0;0;0;-1469;-1001;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,8,21429,ENSMUSG00000020923,conserved gene and region,11,102310837,102310940,104,*,104,10,0.634615385,0.969245107,0.096153846,0.000000092,CpGisland,TRUE,U12,Tr-I
9921,cg26157931,-0.0000368,0.00000881,-4.181421613,0.0000377,loss,ns,0.0000193,0.000015,1.288493701,0.198534966,pos,ns,-0.002941278,0.00438588,-0.67062434,0.502959182,neg,ns,0.298467259,-0.000076,0.00015083,-0.50355895,0.614928978,neg,ns,0.925394792,Snx10,Snx10_Intron,6,51588650,51588699,51588698,51588699,50,+,TTGCATTCTGATTATGTGACTTTCATTTAGTCAGACTTGAATTATTCGCG,"Intron (Snx10-201/Snx10, intron 6 of 6)",6,51523901,51590679,66779,1,Snx10-201,64749,Snx10-201;Snx10-203;Snx10-207;Snx10-202;Snx10-205,Snx10;Snx10;Snx10;Snx10;Snx10,0;64365;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,10,71982,ENSMUSG00000038301,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16896,cg12271214,0.00000092,0.00000121,0.757383901,0.449395195,gain,ns,-0.00000266,0.00000206,-1.288447926,0.198550871,neg,ns,-0.001085517,0.000604646,-1.79529533,0.073580561,neg,ns,1.133236905,0.0000128,0.0000208,0.614905739,0.539068061,pos,ns,0.969669694,1700113H08Rik,1700113H08Rik_Intron,10,87154243,87154292,87154243,87154244,50,-,CGCTTGGCTTCTGACATGAGCTGATAATCAGATTTTCTTGCTTAAATCCA,"Intron (1700113H08Rik-202/1700113H08Rik, intron 3 of 4)",10,87058045,87230589,172545,1,1700113H08Rik-202,96198,1700113H08Rik-202;1700113H08Rik-201,1700113H08Rik;1700113H08Rik,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,6,76640,ENSMUSG00000047129,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14747,cg21520371,0.000000749,0.00000463,0.161682252,0.871661407,gain,ns,-0.0000101,0.00000787,-1.28839568,0.198569025,neg,ns,-0.006732378,0.002304606,-2.921270471,0.003742037,neg,ns,2.426891923,0.0000779,0.0000793,0.983520658,0.326118225,pos,ns,0.805321152,Pea15b,Pea15b_Promoter,5,77515080,77515129,77515128,77515129,50,+,GGATCTCCTCTGGGCAATGAAGCTGCCTCCTTTTTCTCCTCTCTCGACCG,Promoter (3-4kb),5,77511194,77511748,555,2,Pea15b-202,-3332,Pea15b-201;Pea15b-202,Pea15b;Pea15b,-3516;-3332,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,3,231332,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14151,cg26450215,0.0000576,0.00000821,7.018828589,1.42E-11,gain,yes,-0.000018,0.0000139,-1.288201349,0.19863656,neg,ns,0.001674024,0.004086475,0.409649775,0.682345798,pos,ns,0.165995479,0.000245188,0.000140534,1.744695964,0.082028812,pos,ns,0.205024061,Hoxd8,Hoxd8_Promoter,2,74704309,74704358,74704309,74704310,50,+,CGTCTATCAAGGGTGAAATGATGGAAACTATATTCATGGGCATGATTTCC,Promoter (<=1kb),2,74704615,74706812,2198,1,Hoxd8-203,-257,Hoxd8-203;Hoxd8-201;Hoxd8-202;Hoxd9-201,Hoxd8;Hoxd8;Hoxd8;Hoxd9,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,1,10,15437,ENSMUSG00000027102,mapped to different genes,2,74704035,74704310,276,*,276,18,0.652173913,0.695895784,0.065217391,9.05E-11,CpGisland,TRUE,U13,Hc-P
15432,cg12099626,-0.00000381,0.00000497,-0.766879883,0.443736561,loss,ns,-0.0000109,0.00000844,-1.288161827,0.198650297,neg,ns,-0.002654564,0.0024727,-1.073548759,0.283859914,neg,ns,0.546895932,0.0000098,0.000085,0.115195423,0.908364806,pos,ns,0.055102995,Arrdc3,Arrdc3_Exon,13,80884756,80884805,80884804,80884805,50,+,TGTTTTTCTAAGTTTCCACCCTTTGTTAGAAGCGGTTCAATCCTGTTTCG,"Exon (1700023H06Rik-201/1700023H06Rik-201, exon 2 of 2)",13,80883384,80889643,6260,1,Arrdc3-202,1372,Arrdc3-202;Arrdc3-203;Arrdc3-201;Arrdc3-205,Arrdc3;Arrdc3;Arrdc3;Arrdc3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,8,105171,ENSMUSG00000074794,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
12859,cg27661315,-0.0000108,0.0000067,-1.607194314,0.109029768,loss,ns,-0.0000147,0.0000114,-1.288081053,0.198678375,neg,ns,-0.005729984,0.003336125,-1.717556492,0.086876196,neg,ns,1.061099204,0.00000439,0.000114729,0.038289592,0.969481435,pos,ns,0.874120494,Bend4,Bend4_threeUTR,5,67400048,67400097,67400096,67400097,50,-,AAGGATGCAGTACCTCGGAGGCATGTTACTTTAACTGGATCCAGAGGGCG,3' UTR,5,67392147,67427799,35653,2,Bend4-201,27702,Bend4-201;Bend4-203;Bend4-202;Bend4-205;Bend4-204,Bend4;Bend4;Bend4;Bend4;Bend4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,7,666938,ENSMUSG00000092060,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5631,cg27369935,-0.00000785,0.00000616,-1.273877006,0.20366124,loss,ns,-0.0000135,0.0000105,-1.28807003,0.198682207,neg,ns,-0.005799722,0.003067634,-1.890617353,0.059607872,neg,ns,1.224696383,-0.0000205,0.000105496,-0.194489904,0.845919693,neg,ns,0.890810607,Hdac9,Hdac9_Exon,12,34431884,34431933,34431884,34431885,50,+,CGGCTCACGGAATGATTTTTTCCATTAGTTGGAGTGTCTTTCGTTGCTGA,"Exon (Hdac9-205/Hdac9, exon 4 of 25)",12,34047580,34528328,480749,2,Hdac9-205,96395,Hdac9-205;Hdac9-204;Hdac9-206;Hdac9-210;Hdac9-207;Hdac9-212;Hdac9-201;Hdac9-211;Hdac9-208;Hdac9-203;Hdac9-202;Hdac9-209,Hdac9;Hdac9;Hdac9;Hdac9;Hdac9;Hdac9;Hdac9;Hdac9;Hdac9;Hdac9;Hdac9;Hdac9,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,31,79221,ENSMUSG00000004698,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3934,cg24474876,-0.00000307,0.00000471,-0.652078604,0.514833648,loss,ns,-0.0000103,0.00000801,-1.287892424,0.198743955,neg,ns,-0.004265406,0.002346671,-1.817641496,0.070084167,neg,ns,1.154380081,0.0000242,0.0000807,0.300035511,0.764351159,pos,ns,0.860345636,Trp63,Trp63_Exon,16,25820393,25820442,25820441,25820442,50,+,GTACACGAACCTGGGGCTCCTGAACAGCATGGACCAGCAGATTCAGAACG,"Exon (Trp63-206/Trp63, exon 4 of 4)",16,25683763,25821318,137556,1,Trp63-206,136630,Trp63-206;Trp63-207;Trp63-202;Trp63-208;Trp63-203;Trp63-204;Trp63-201;Trp63-205,Trp63;Trp63;Trp63;Trp63;Trp63;Trp63;Trp63;Trp63,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,8,22061,ENSMUSG00000022510,conserved gene and region,16,25820441,25820504,64,*,64,7,0.65625,1.142857143,0.109375,0.00000723,CpGisland,TRUE,U15,NS
27529,cg03454461,-0.0000184,0.00000891,-2.064890537,0.039764612,loss,ns,0.0000195,0.0000151,1.287659038,0.198825118,pos,ns,-0.003975721,0.004432566,-0.896934283,0.370449998,neg,ns,0.431270404,-0.0000448,0.000152436,-0.293777417,0.769124582,neg,ns,0.82403237,Zfp64,Zfp64_Intergenic_upstream,2,169178994,169179043,169178994,169178995,50,+,CGGAATTGTAAAACTAATAGGGCTGTTAAAACCAGCTTTCCTGAAAATTA,Distal Intergenic,2,168893331,168955587,62257,2,Zfp64-203,-223407,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,11,22722,ENSMUSG00000027551,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10887,cg07288458,0.0000209,0.0000276,0.756446217,0.449956182,gain,ns,-0.0000603,0.0000468,-1.287412511,0.198910877,neg,ns,-0.005099572,0.013723989,-0.371580901,0.710458754,neg,ns,0.14846113,0.000138741,0.000471967,0.293963807,0.768982283,pos,ns,0.626165324,Tcf7l2,Tcf7l2_Promoter,19,55736497,55736546,55736545,55736546,50,-,GTATATCTTAAGAAAGTTCTTATGCAGACTTGGCTTCAGGCAATAAAACG,Promoter (5-6kb),19,55741820,55933252,191433,1,Tcf7l2-201,-5323,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,88,21416,ENSMUSG00000024985,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4507,cg11529796,-0.0000737,0.000012,-6.142597417,2.49E-09,loss,yes,0.0000262,0.0000204,1.287332173,0.19893883,pos,ns,-0.014625284,0.005971608,-2.449136785,0.014873264,neg,ns,1.827593722,0.000311924,0.000205363,1.518890785,0.129809174,pos,ns,0.838909272,Ntm,Ntm_Intron,9,29318933,29318982,29318981,29318982,50,-,CAGTGCAATTGGAGGCTTTTATGACTCCTGTCAGGACTTTTATGACCCCG,"Intron (Ntm-201/Ntm, intron 2 of 7)",9,28994750,29963129,968380,2,Ntm-201,644147,Ntm-201;Ntm-203;Ntm-202;Ntm-204;Ntm-210,Ntm;Ntm;Ntm;Ntm;Ntm,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,27,32,235106,ENSMUSG00000059974,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12665,cg06711883,0.0000448,0.00000865,5.173447697,0.000000413,gain,yes,-0.0000189,0.0000147,-1.287190688,0.198988065,neg,ns,0.028187479,0.004307681,6.543539293,2.48E-10,pos,ns,9.604966033,-0.000408003,0.000148141,-2.754157848,0.006231827,neg,ns,0.837748395,Herc1,Herc1_Exon,9,66461778,66461827,66461778,66461779,50,+,CGTTGTATGACTTTAATTTAGATGAGGAATTGGAAATTGATCTTGATGAT,"Exon (Herc1-201/Herc1, exon 44 of 78)",9,66350526,66508775,158250,1,Herc1-201,111252,Herc1-201;Herc1-204,Herc1;Herc1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,15,15,235439,ENSMUSG00000038664,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2429,cg19703390,-0.00000639,0.00000208,-3.063900844,0.002376542,loss,ns,0.00000456,0.00000354,1.287182639,0.198990866,pos,ns,-0.000642455,0.001037426,-0.619277375,0.536188491,neg,ns,0.270682512,0.00000122,0.0000357,0.034210105,0.972731625,pos,ns,0.96131165,Mark4,Mark4_threeUTR,7,19426339,19426388,19426387,19426388,50,+,GGTCAGCTTCACACTCCAGGGGAATCGGAGCAGCCGGGGGGCGGTTTCCG,3' UTR,7,19424775,19458821,34047,2,Mark4-201,32433,Ckm-203;Ckm-201;Mark4-201;Mark4-206;Mark4-202;Mark4-205;Mark4-203,Ckm;Ckm;Mark4;Mark4;Mark4;Mark4;Mark4,15314;15276;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,2,232944,ENSMUSG00000030397,conserved gene but different region,7,19426031,19426388,358,*,358,33,0.720670391,0.737637363,0.092178771,3.57E-24,CpGisland,TRUE,U10,Tr-S
26829,cg11406677,-0.00000231,0.00000226,-1.021091463,0.308007291,loss,ns,0.00000495,0.00000384,1.287035812,0.199041971,pos,ns,0.002895195,0.001125779,2.571726402,0.010585047,pos,ns,1.975307214,-0.000104127,0.0000387,-2.689534338,0.007542568,neg,ns,0.950758111,Smg7,Smg7_Exon,1,152861763,152861812,152861763,152861764,50,-,CGTCTGTTTATTGCTGATAATTCCCAATTGGGAAGACTTCACACGGCATG,"Exon (Smg7-202/Smg7, exon 5 of 22)",1,152836995,152902622,65628,2,Smg7-202,40810,Smg7-202;Smg7-201;Smg7-203;Smg7-204,Smg7;Smg7;Smg7;Smg7,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,7,226517,ENSMUSG00000042772,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7968,cg13834844,0.0000295,0.00000293,10.05680722,8.89E-21,gain,yes,-0.00000641,0.00000498,-1.287002939,0.199053414,neg,ns,0.004677738,0.001459877,3.20419996,0.00149537,pos,ns,2.825251318,-0.0000988,0.0000502,-1.968506726,0.049900477,neg,ns,0.030981712,Pax2,Pax2_Intergenic_upstream,19,44671125,44671174,44671173,44671174,50,+,AAACTTCTATTAGTAATGGAGACCTCGCCGGAGACCTTCCGCGGAGAGCG,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-84871,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,19,44671150,44671210,61,*,61,7,0.62295082,1.196078431,0.114754098,0.00000522,CpGisland,TRUE,U13,Hc-P
8896,cg07252888,-0.00000118,0.00000486,-0.242598881,0.808476576,loss,ns,-0.0000106,0.00000826,-1.286896936,0.199090317,neg,ns,-0.005139941,0.002420114,-2.123842244,0.0344749,neg,ns,1.462496991,0.0000989,0.0000832,1.188665634,0.23548104,pos,ns,0.851639895,Cyfip2,Cyfip2_Exon,11,46272628,46272677,46272676,46272677,50,+,AGTGAGCACTGGTCTTAATGTATCTGGCCAGCTCTATCTGCATGTCGCCG,"Exon (Cyfip2-205/Cyfip2, exon 10 of 31)",11,46193850,46312358,118509,2,Cyfip2-205,39681,Cyfip2-205;Cyfip2-201;Cyfip2-202;Cyfip2-204,Cyfip2;Cyfip2;Cyfip2;Cyfip2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,8,76884,ENSMUSG00000020340,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17328,cg07621703,-0.0000082,0.00000723,-1.134972207,0.257263754,loss,ns,0.0000158,0.0000123,1.286813626,0.199119323,pos,ns,0.00664006,0.003597539,1.845722899,0.065885837,pos,ns,1.181207935,-0.000335247,0.000123719,-2.709742547,0.007108205,neg,ns,0.628956198,Ankfn1,Ankfn1_Intron,11,89718723,89718772,89718771,89718772,50,+,ACCATCCTACAGTCTTGCTGCTGACAAATATAAAAATAAAGCCTTGTTCG,"Intron (Ankfn1-208/Ankfn1, intron 3 of 21)",11,89391238,89841266,450029,2,Ankfn1-208,122494,Ankfn1-208;Ankfn1-204,Ankfn1;Ankfn1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,15,382543,ENSMUSG00000047773,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11350,cg13411623,4.62E-08,0.000000436,0.105970985,0.915673913,gain,ns,-0.000000953,0.00000074,-1.286787949,0.199128264,neg,ns,-0.00032647,0.000216865,-1.50540904,0.133237154,neg,ns,0.875374652,0.00000163,0.00000746,0.21882007,0.826934204,pos,ns,0.990351703,Clk3,Clk3_Exon,9,57758629,57758678,57758629,57758630,50,-,CGCTCTTGGAGCCAATCGCCGATCCGGCACACCAGGTGACCCTCCTTGTC,"Exon (Clk3-207/Clk3, exon 3 of 12)",9,57750624,57765103,14480,2,Clk3-207,6425,Clk3-207;Clk3-201;Clk3-205;Clk3-203;Clk3-206;Clk3-209;Clk3-208;Clk3-204,Clk3;Clk3;Clk3;Clk3;Clk3;Clk3;Clk3;Clk3,0;0;0;0;-3308;0;5630;6175,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,14,102414,ENSMUSG00000032316,conserved gene and region,9,57758611,57758779,169,*,169,14,0.615384615,0.908602151,0.082840237,7.36E-10,CpGisland,TRUE,U12,Tr-I
17313,cg13303596,-0.00000293,0.00000142,-2.061199812,0.040117646,loss,ns,0.00000311,0.00000242,1.286751481,0.199140962,pos,ns,0.001848674,0.000708243,2.610226022,0.009487663,pos,ns,2.02284074,-0.0000357,0.0000244,-1.466725813,0.143464352,neg,ns,0.955671198,Vcan,Vcan_Exon,13,89657571,89657620,89657571,89657572,50,-,CGTTGAATGAAACCATCTTTGCAGTGGTATCTAATCAGGGAGTTGATTTC,"Exon (Vcan-203/Vcan, exon 14 of 15)",13,89655312,89742509,87198,2,Vcan-203,84889,Vcan-203;Vcan-206;Vcan-202;Vcan-208;Vcan-201;Vcan-204,Vcan;Vcan;Vcan;Vcan;Vcan;Vcan,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,6,13003,ENSMUSG00000021614,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13988,cg08229569,0.00000563,0.00000538,1.046136891,0.29631284,gain,ns,0.0000118,0.00000914,1.286695108,0.199160593,pos,ns,0.00423027,0.002676328,1.580624714,0.114983613,pos,ns,0.939364049,-0.000265279,0.000092,-2.882252632,0.004224199,neg,ns,0.84619219,Mecp2,Mecp2_Exon,X,74036303,74036352,74036303,74036304,50,-,CGTCCCCGGCCTCTGCCAGTTCCTGGAGCTTTGGGAGATTTGGGCTTCTT,"Exon (Mecp2-202/Mecp2, exon 4 of 4)",20,74026592,74085669,59078,2,Mecp2-202,49317,Mecp2-202;Mecp2-205;Mecp2-201;Mecp2-203;Mecp2-204,Mecp2;Mecp2;Mecp2;Mecp2;Mecp2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,10,17257,ENSMUSG00000031393,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11740,cg21711791,0.0000134,0.00000407,3.292217388,0.001108833,gain,ns,-0.00000889,0.00000691,-1.286579504,0.199200855,neg,ns,0.003351019,0.002023972,1.655664749,0.098801626,pos,ns,1.005235909,-0.000179996,0.0000696,-2.585987673,0.010165971,neg,ns,0.0573824,Amer2,Amer2_Exon,14,60379319,60379368,60379319,60379320,50,-,CGTCGGCAGATCGTATTTGTTTGATGTTTTCTGACGTGACTTCACTGAAA,"Exon (Amer2-201/Amer2, exon 1 of 1)",14,60373259,60380655,7397,1,Amer2-203,6060,Amer2-203;Amer2-202;Amer2-201;Amer2-204,Amer2;Amer2;Amer2;Amer2,0;6032;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,72125,ENSMUSG00000021986,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
4715,cg00728976,-0.000000554,0.00000478,-0.11584502,0.907850375,loss,ns,-0.0000104,0.00000812,-1.286444926,0.199247732,neg,ns,0.000657092,0.002379473,0.276150229,0.78261669,pos,ns,0.106450894,0.0000924,0.0000818,1.128774006,0.259865939,pos,ns,0.91895358,Btbd9,Btbd9_Intron,17,30236889,30236938,30236937,30236938,50,-,GCTTACATCCTGCTAGCCCGTCATATTTAATTACATTTTAACTATATTCG,"Intron (Btbd9-202/Btbd9, intron 9 of 10)",17,30215524,30576488,360965,2,Btbd9-202,339550,Btbd9-202;Btbd9-203;Btbd9-201;Btbd9-218;Btbd9-208;Btbd9-221;Btbd9-224;Btbd9-205;Btbd9-219;Btbd9-209;Btbd9-206;Btbd9-220;Btbd9-210,Btbd9;Btbd9;Btbd9;Btbd9;Btbd9;Btbd9;Btbd9;Btbd9;Btbd9;Btbd9;Btbd9;Btbd9;Btbd9,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,5,224671,ENSMUSG00000062202,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15639,cg01554470,0.0000195,0.0000113,1.719918554,0.086445279,gain,ns,-0.0000247,0.0000192,-1.28627146,0.199308167,neg,ns,0.043109926,0.005630986,7.655839179,2.46E-13,pos,yes,12.60905671,-0.000701395,0.000193649,-3.621990687,0.000341437,neg,ns,0.811971847,Nfib,Nfib_Intron,4,82495107,82495156,82495155,82495156,50,-,TCCCCCTCGCCTGGCACTTCACAAACAAAATGGCGGTTCTTGTAGCAACG,"Intron (Nfib-201/Nfib, intron 2 of 11)",4,82290173,82505308,215136,2,Nfib-201,10152,Nfib-201;Nfib-203;Nfib-202;Nfib-205;Nfib-206;Nfib-204;Nfib-207;Nfib-209;Nfib-210;Nfib-208;Nfib-212;Nfib-211,Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,66,18028,ENSMUSG00000008575,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3972,cg20893474,-0.00000262,0.00000332,-0.78821464,0.431173477,loss,ns,0.00000726,0.00000564,1.286269389,0.199308888,pos,ns,0.005267955,0.001652683,3.187517227,0.001581425,pos,ns,2.800951271,-0.000168224,0.0000568,-2.959836951,0.003315368,neg,ns,0.934604123,Hook3,Hook3_Intron,8,26083768,26083817,26083816,26083817,50,+,GGGGAAGCGTTAGTTAAGAAGCGGTGTTGCCACGTCAAGGCCCTTCCCCG,"Intron (1700047A11Rik-202/1700047A11Rik-202, intron 1 of 4)",8,26021421,26119224,97804,2,Hook3-201,35407,Hook3-201;Hook3-208;Hook3-204,Hook3;Hook3;Hook3,0;-4391;8465,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,4,320191,ENSMUSG00000037234,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15822,cg02296363,-0.0000186,0.00000957,-1.947317679,0.052399345,loss,ns,0.0000209,0.0000163,1.286172931,0.1993425,pos,ns,0.000813195,0.004761101,0.170799781,0.864492626,pos,ns,0.063238707,-0.000291609,0.000163734,-1.780995612,0.075892269,neg,ns,0.741017839,Washc4,Washc4_threeUTR,10,83585838,83585887,83585838,83585839,50,-,CGAATGATAAGATCTGGTGGTCTTCATTGTAGCAGCAATGCCATTAGGTA,3' UTR,10,83543752,83595434,51683,1,Washc4-202,42086,Washc4-202;Washc4-201;Washc4-203;Washc4-204,Washc4;Washc4;Washc4;Washc4,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,2,319277,ENSMUSG00000034560,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15593,cg24450897,0.000131247,0.0000141,9.295328329,2.70E-18,gain,yes,-0.0000308,0.000024,-1.286079165,0.199375177,neg,ns,0.016674841,0.007027531,2.372787858,0.018264208,pos,ns,1.73839915,-0.000480936,0.000241676,-1.99000078,0.047468985,neg,ns,0.085974646,Zfp804a,Zfp804a_fiveUTR,2,82053781,82053830,82053781,82053782,50,+,CGGCTGCCCCATGGAGTGTTACTACATTGTCATCAGCTCCACGCATCTCA,Promoter (<=1kb),2,82053222,82259879,206658,1,Zfp804a-201,559,Zfp804a-201,Zfp804a,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,9,241514,ENSMUSG00000070866,conserved gene and region,2,82053332,82053782,451,*,451,65,0.771618625,0.972143923,0.144124169,3.16E-61,CpGisland,TRUE,U3,Pr-B
5978,cg14063008,0.0000412,0.00000644,6.408653133,5.46E-10,gain,yes,0.0000141,0.0000109,1.286023257,0.199394663,pos,ns,0.005072304,0.003203255,1.583484212,0.114330754,pos,ns,0.941836931,-0.000259033,0.00011016,-2.35143222,0.019327012,neg,ns,0.087909884,Dab2ip,Dab2ip_Exon,2,35661487,35661536,35661487,35661488,50,-,CGCAGGGCTTCCTCAGCCGCCGCCTCAAGGGCTCCATCAAGCGCACCAAG,"Exon (Dab2ip-205/Dab2ip, exon 3 of 17)",2,35558266,35730994,172729,1,Dab2ip-205,103221,Dab2ip-205;Dab2ip-206;Dab2ip-209;Dab2ip-211;Dab2ip-202;Dab2ip-207;Dab2ip-212;Dab2ip-203;Dab2ip-210,Dab2ip;Dab2ip;Dab2ip;Dab2ip;Dab2ip;Dab2ip;Dab2ip;Dab2ip;Dab2ip,0;0;0;0;0;0;0;0;-83,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,12,69601,ENSMUSG00000026883,conserved gene but different region,2,35661124,35661879,756,*,756,101,0.776455027,0.88639688,0.133597884,6.84E-91,CpGisland,TRUE,NA,NRS
5421,cg04564383,0.0000291,0.0000132,2.201248877,0.028455129,gain,ns,0.0000288,0.0000224,1.285787664,0.19947679,pos,ns,0.017189993,0.006570704,2.61615684,0.009327993,pos,ns,2.030211799,-0.000325512,0.000225966,-1.440535314,0.150725209,neg,ns,0.711118187,Ccdc39,Ccdc39_Intergenic_upstream,3,33905729,33905778,33905729,33905730,50,-,CGTCCATTAGTTCTTCATTAAAGCAAGATTAAATTGCACGGCAAATCACA,Distal Intergenic,3,33837994,33844310,6317,2,Ccdc39-202,-61468,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,5,51938,ENSMUSG00000027676,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9743,cg10709038,0.00000383,0.00000869,0.44046535,0.659907078,gain,ns,-0.000019,0.0000148,-1.28578012,0.19947942,neg,ns,-0.008186464,0.004324361,-1.8931037,0.05927528,neg,ns,1.227126387,-0.0000808,0.000148714,-0.543218537,0.587369726,neg,ns,0.656149903,Gm42459,Gm42459_Intron,5,50457668,50457717,50457668,50457669,50,+,CGAATCAACAGGGTTTTCCTCAGATTGAGTTGCCGCCAATTATCCTCCAT,"Intron (Gm36814-201/Gm36814-201, intron 10 of 10)",5,50517473,50518214,742,1,Gm42459-201,-59756,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19800,cg14872074,-0.0000676,0.0000113,-5.991137411,5.78E-09,loss,yes,0.0000247,0.0000192,1.285600285,0.199542128,pos,ns,-0.006758715,0.005618382,-1.202964642,0.229907937,neg,ns,0.638446036,0.0000721,0.000193216,0.373044837,0.70937002,pos,ns,0.67102644,Acvrl1,Acvrl1_Intron,15,101134469,101134518,101134517,101134518,50,+,CAGGATGGTTTCCATGGGGAAGTGAACCAGGACTTCCCCTGCAGGCCCCG,"Intron (Acvrl1-201/Acvrl1, intron 2 of 10)",15,101128522,101145336,16815,1,Acvrl1-201,5947,Acvrl1-201;Acvrl1-211;Acvrl1-210;Acvrl1-204;Acvrl1-202;Acvrl1-203;Acvrl1-206;Acvrl1-207;Acvrl1-205;Acvrl1-209;Acvrl1-208,Acvrl1;Acvrl1;Acvrl1;Acvrl1;Acvrl1;Acvrl1;Acvrl1;Acvrl1;Acvrl1;Acvrl1;Acvrl1,0;0;0;0;0;0;0;0;0;-1139;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,11482,ENSMUSG00000000530,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
19036,cg05981231,-0.000016,0.0000062,-2.5837109,0.010231863,loss,ns,-0.0000135,0.0000105,-1.285398347,0.199612559,neg,ns,0.002015653,0.003083871,0.653611323,0.51384676,pos,ns,0.289166378,-0.0000959,0.000106054,-0.903965868,0.366715431,neg,ns,0.844145922,Fgf5,Fgf5_Exon,5,98261987,98262036,98261987,98261988,50,-,CGAGGAGTTTTCAGCAACAAATTTTTAGCGATGTCAAAAAAAGGAAAACT,"Exon (Fgf5-201/Fgf5, exon 2 of 3)",5,98254184,98277030,22847,1,Fgf5-201,7803,Fgf5-201;Fgf5-202,Fgf5;Fgf5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,14176,ENSMUSG00000029337,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16466,cg09703649,-0.00000152,0.00000167,-0.912905634,0.362001593,loss,ns,-0.00000364,0.00000283,-1.285322166,0.199639134,neg,ns,0.00017952,0.000830198,0.216236982,0.828945248,pos,ns,0.081474154,-0.0000254,0.0000286,-0.888510757,0.374954966,neg,ns,0.958113026,Ylpm1,Ylpm1_Exon,12,85060255,85060304,85060255,85060256,50,+,CGATTTAGGGTTACATTCCGAAAAGCAAATGGGAGATGGACACATCTGAG,"Exon (Ylpm1-207/Ylpm1, exon 17 of 20)",12,84996321,85070492,74172,1,Ylpm1-207,63934,Ylpm1-207;Ylpm1-201;Ylpm1-202;Ylpm1-203;Ylpm1-208;Ylpm1-206;Ylpm1-205,Ylpm1;Ylpm1;Ylpm1;Ylpm1;Ylpm1;Ylpm1;Ylpm1,0;0;0;0;18028;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,13,56531,ENSMUSG00000021244,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17086,cg05217182,0.0000502,0.00000953,5.269692654,0.000000256,gain,yes,-0.0000208,0.0000162,-1.285195265,0.199683409,neg,ns,-0.009171066,0.004744,-1.933192772,0.05412287,neg,ns,1.266619183,0.000194097,0.000163146,1.189713915,0.235069233,pos,ns,0.863959794,Msi2,Msi2_Exon,11,88348859,88348908,88348907,88348908,50,-,GCTGGCAGGGCCGTAGAGATCGGCGACAGGTCCTGGGCTGTTGGCCCCCG,"Exon (Msi2-203/Msi2, exon 12 of 14)",11,88339382,88718229,378848,2,Msi2-203,369321,Msi2-203;Msi2-201,Msi2;Msi2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,36,76626,ENSMUSG00000069769,conserved gene and region,11,88348768,88348968,201,*,201,21,0.696517413,0.87012987,0.104477612,9.68E-17,CpGisland,TRUE,U11,Tr-P
10813,cg01293622,-0.00000958,0.00000629,-1.524162164,0.12848769,loss,ns,-0.0000137,0.0000107,-1.285182304,0.199687931,neg,ns,0.003435549,0.003128272,1.098225701,0.272958191,pos,ns,0.563903868,-0.000388291,0.000107581,-3.609287097,0.000357883,neg,ns,0.829444342,Carmil3,Carmil3_threeUTR,14,55495443,55495492,55495443,55495444,50,+,CGGGAGCTGTGTGCTGCATGCCCTCACTCTGTCCCACAACCCCATCGAGG,3' UTR,14,55490651,55508272,17622,1,Carmil3-212,4792,Carmil3-212;Carmil3-205;Carmil3-201;Carmil3-209;Carmil3-208;Carmil3-210;Carmil3-206;Carmil3-203;Carmil3-202;Carmil3-211,Carmil3;Carmil3;Carmil3;Carmil3;Carmil3;Carmil3;Carmil3;Carmil3;Carmil3;Carmil3,0;0;0;0;0;2577;0;0;-1519;-2140,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,2,268747,ENSMUSG00000022211,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3623,cg04665471,0.0000508,0.00000791,6.430307416,4.81E-10,gain,yes,-0.0000173,0.0000134,-1.284959389,0.199765722,neg,ns,-0.000584792,0.00393498,-0.148613759,0.881955041,neg,ns,0.054553553,-0.000133479,0.000135324,-0.986366775,0.324722386,neg,ns,0.844089858,Gm47909,Gm47909_Intergenic_downstream,14,24826222,24826271,24826222,24826223,50,-,CGTTTGTTGTGCTCGCAAACACCGTGTTGGAAGATTTCATGCTAATGAAA,Distal Intergenic,14,25089939,25090406,468,2,Gm47909-201,264184,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,13,17,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25647,cg01092932,0.000123162,0.0000131,9.409089615,1.17E-18,gain,yes,-0.0000286,0.0000222,-1.28492999,0.199775983,neg,ns,0.020117125,0.006514858,3.08788394,0.002198172,pos,ns,2.657938336,-0.000369227,0.000224045,-1.647999267,0.100365939,neg,ns,0.410433597,Ptprc,Ptprc_Exon,1,137966665,137966714,137966665,137966666,50,-,CGGTGGGTTGAACTGTGTGGACAAGCTCACTGAACAATGAATGCAACTGT,"Exon (Mir181a-1hg-201/Mir181a-1hg-201, exon 1 of 1)",1,138112030,138115474,3445,2,Ptprc-211,148809,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,19264,ENSMUSG00000026395,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23549,cg25456335,0.000031,0.00000631,4.912883091,0.00000146,gain,yes,0.0000138,0.0000107,1.284928425,0.199776529,pos,ns,0.007100007,0.003141395,2.260144899,0.024505865,pos,ns,1.610729971,0.0000484,0.000108032,0.447626793,0.654735194,pos,ns,0.123450569,Sp8,Sp8_Promoter,12,118843981,118844030,118843981,118843982,50,-,CGGTAATAAAGAGAGCGACATGGATGAGACAGATGATATGATTAAGGGGC,Promoter (2-3kb),12,118846329,118852576,6248,1,Sp8-201,-2348,Sp8-201;Sp8-202,Sp8;Sp8,0;-3556,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,27,29,320145,ENSMUSG00000048562,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
3424,cg16887177,-0.00000835,0.0000066,-1.265559488,0.206621186,loss,ns,0.0000144,0.0000112,1.284448275,0.19994417,pos,ns,-0.004850431,0.003284065,-1.47695955,0.140701615,neg,ns,0.851700917,0.00017967,0.000112939,1.590859902,0.112660325,pos,ns,0.101765555,A830031A19Rik,A830031A19Rik_Promoter,11,24076503,24076552,24076551,24076552,50,+,CTGTACATTTTACGTAAAACTGAAAGTATCCCACGCCAGAGTGAAGCCCG,Promoter (1-2kb),11,24048955,24075054,26100,2,A830031A19Rik-201,-1449,A830031A19Rik-201;Bcl11a-201;Bcl11a-203;Bcl11a-205;Bcl11a-202;Bcl11a-204,A830031A19Rik;Bcl11a;Bcl11a;Bcl11a;Bcl11a;Bcl11a,0;0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,9,23,268391,NA,mapped to different genes,11,24076381,24076583,203,*,203,22,0.630541872,1.145128205,0.108374384,6.83E-18,CpGisland,TRUE,NA,NRS
16976,cg15327921,-4.42E-08,0.000000858,-0.05156142,0.958911368,loss,ns,0.00000187,0.00000146,1.284294916,0.199997736,pos,ns,-0.000486455,0.000426824,-1.139708733,0.255287509,neg,ns,0.592970434,0.000026,0.0000147,1.773630183,0.07710601,pos,ns,0.98675949,Zfp423,Zfp423_Intron,8,87742191,87742240,87742239,87742240,50,-,AGGGAAATTAGAGCATTACCTGGTCCCCGCCAGTGTGCCAGCTCCGAGCG,"Intron (Zfp423-203/Zfp423, intron 3 of 5)",8,87661810,87804439,142630,2,Zfp423-203,62199,Zfp423-203;Zfp423-202;Zfp423-201,Zfp423;Zfp423;Zfp423,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,42,53,94187,ENSMUSG00000045333,conserved gene and region,8,87742179,87742302,124,*,124,11,0.64516129,0.853033146,0.088709677,3.88E-08,CpGisland,TRUE,U15,NS
19476,cg02411865,-0.0000135,0.00000501,-2.685559247,0.007630774,loss,ns,0.0000109,0.00000852,1.284229366,0.200020634,pos,ns,0.00784078,0.002495507,3.141958166,0.00184032,pos,ns,2.735106686,-0.000139043,0.0000858,-1.620167971,0.106212954,neg,ns,0.900620888,Pja1,Pja1_Intergenic_downstream,X,99391674,99391723,99391674,99391675,50,+,CGCTTGCTTGACAGAATTTAGATTAGACAAAACATGAGCTCATTTCTGCC,Distal Intergenic,20,99466146,99470672,4527,2,Pja1-204,78949,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,17,18744,ENSMUSG00000034403,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19105,cg09205258,-0.0000331,0.00000814,-4.068460267,0.0000601,loss,ns,-0.0000178,0.0000138,-1.284134321,0.20005384,neg,ns,-0.00748637,0.004050451,-1.848280629,0.065514015,neg,ns,1.183665787,-0.0000573,0.000139295,-0.411115693,0.681271757,neg,ns,0.808519999,Erbb2,Erbb2_Exon,11,98433934,98433983,98433934,98433935,50,-,CGCCTTCTGGGCATCTGCCTGACATCCACGGTGCAGCTGGTGACACAGCT,"Exon (Erbb2-201/Erbb2, exon 20 of 27)",11,98412470,98437716,25247,1,Erbb2-201,21464,Erbb2-201;Erbb2-202;Mien1-201,Erbb2;Erbb2;Mien1,0;0;5008,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,13866,ENSMUSG00000062312,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4700,cg24576342,0.000012,0.00000592,2.035313158,0.042669669,gain,ns,-0.0000129,0.0000101,-1.284109236,0.200062605,neg,ns,-0.001816146,0.002945623,-0.616557545,0.537979112,neg,ns,0.269234586,0.000246343,0.0001013,2.431828087,0.015588906,pos,ns,0.763571384,Nrf1,Nrf1_Exon,6,30169483,30169532,30169531,30169532,50,-,ATTGCTCAGAGCGGAGAGACACAAGCAAAAATGTGCTAGTGCCAAAATCG,"Exon (Mir96-201/Mir96-201, exon 1 of 1)",6,30116115,30140904,24790,1,Nrf1-214,53417,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,5,18181,ENSMUSG00000058440,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
1131,cg06590610,-0.00000159,0.00000593,-0.268438444,0.788540396,loss,ns,0.0000129,0.0000101,1.284048063,0.200083979,pos,ns,0.0024292,0.002949376,0.823631971,0.41078189,pos,ns,0.386388712,-0.000197643,0.000101429,-1.948587625,0.052246671,neg,ns,0.629150501,Ikzf1,Ikzf1_Exon,11,11748397,11748446,11748397,11748398,50,+,CGAATGCTTGATGCCTCGGGAGAGAAAATGAATGGCTCCCACAGGGACCA,"Exon (Ikzf1-203/Ikzf1, exon 5 of 9)",11,11685003,11754083,69081,1,Ikzf1-205,63394,Ikzf1-205;Ikzf1-203;Ikzf1-204;Ikzf1-202;Ikzf1-201,Ikzf1;Ikzf1;Ikzf1;Ikzf1;Ikzf1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,15,22778,ENSMUSG00000018654,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6591,cg13001861,-0.00000862,0.00000452,-1.908985612,0.057187124,loss,ns,0.00000985,0.00000767,1.283717465,0.200199524,pos,ns,-0.002676401,0.002247509,-1.190829974,0.234631363,neg,ns,0.629613937,0.0000348,0.0000773,0.449811278,0.653160886,pos,ns,0.917609492,Zfp536,Zfp536_Intergenic_upstream,7,37815595,37815644,37815595,37815596,50,-,CGGTTCATAACCGATTTTCCACCAGTCAAAAGCAAGTGGTGCTCTGTTAG,Distal Intergenic,7,37569629,37773641,204013,2,Zfp536-208,-42003,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,112,243937,ENSMUSG00000043456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3594,cg14424414,-0.00000649,0.00000321,-2.018967915,0.044351089,loss,ns,0.00000701,0.00000546,1.283521087,0.200268182,pos,ns,0.000475323,0.001599529,0.297164171,0.766540197,pos,ns,0.115465066,-0.0000984,0.000055,-1.788372367,0.074692406,neg,ns,0.911096706,Rps24,Rps24_Intron,14,24635979,24636028,24636027,24636028,50,+,AAAATAAATATCAGAGACAATTTGCCAACAAAGCCGATTTTCTCCGCCCG,"Intron (4930428N03Rik-205/4930428N03Rik-205, intron 2 of 5)",14,24491149,24491989,841,1,Rps24-209,144830,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,12,20088,ENSMUSG00000025290,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
288,cg13396001,-0.000000539,0.00000152,-0.355755797,0.722265417,loss,ns,0.0000033,0.00000257,1.283506637,0.200273235,pos,ns,0.00156079,0.00075429,2.06921721,0.039354124,pos,ns,1.405009749,-0.0000545,0.0000259,-2.099659203,0.036566931,neg,ns,0.964015652,Atad2b,Atad2b_threeUTR,12,5013961,5014010,5013961,5013962,50,-,CGCTTTAACATCTTCAGCAAACCGGTGGATATTGAAGAGGTCTTGTTTCA,3' UTR,12,4917404,5047394,129991,1,Atad2b-201,96557,Atad2b-201;Atad2b-203,Atad2b;Atad2b,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,7,320817,ENSMUSG00000052812,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18090,cg19425006,0.000126548,0.000011,11.45543151,1.43E-25,gain,yes,-0.0000241,0.0000188,-1.283463549,0.200288302,neg,ns,-0.01406765,0.005498205,-2.558589431,0.010984676,neg,ns,1.959212733,0.000531044,0.000189083,2.808523289,0.005292743,pos,ns,0.544461833,Magi1,Magi1_Intron,6,93717548,93717597,93717548,93717549,50,+,CGGCCTGGGAAATTGAACACTTGGACAGAATCTCAAATGCTCTTCTGGAT,"Intron (Magi1-201/Magi1, intron 11 of 21)",6,93675455,94283322,607868,2,Magi1-201,565725,Magi1-201;Magi1-202;Magi1-208;Magi1-203;Magi1-206;Magi1-209;Magi1-205,Magi1;Magi1;Magi1;Magi1;Magi1;Magi1;Magi1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,18,14924,ENSMUSG00000045095,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
18182,cg25506569,0.0000454,0.00000914,4.963776574,0.00000114,gain,yes,-0.0000199,0.0000155,-1.283405827,0.200308488,neg,ns,0.011433442,0.004551194,2.512185088,0.012506306,pos,ns,1.902870962,-0.000522779,0.000156515,-3.340115059,0.000939732,neg,ns,0.238240801,Cacna1g,Cacna1g_Exon,11,94413147,94413196,94413147,94413148,50,+,CGTCAGAGCTAGAGAGCAGGACGGTTCAGACACAATCTCTGACGTCAGAG,"Exon (Cacna1g-207/Cacna1g, exon 35 of 38)",11,94408391,94474100,65710,2,Cacna1g-202,60904,Cacna1g-202;Cacna1g-203;Cacna1g-205;Cacna1g-206;Cacna1g-207;Cacna1g-208;Cacna1g-209;Cacna1g-210;Cacna1g-211;Cacna1g-201;Cacna1g-204;Cacna1g-213;Cacna1g-215,Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g,0;0;0;0;0;0;0;0;0;0;0;-1468;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,18,12291,ENSMUSG00000020866,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
19713,cg20211561,-0.000000581,0.000000809,-0.717535732,0.473583932,loss,ns,0.00000176,0.00000137,1.283268259,0.200356602,pos,ns,0.000536342,0.000402783,1.331589272,0.183973481,pos,ns,0.735244773,-0.0000185,0.0000139,-1.338837957,0.181604376,neg,ns,0.983688099,Fam168a,Fam168a_Exon,7,100824214,100824263,100824214,100824215,50,-,CGGGACCGAGAACCGAACTTACCAAGCATCCTCTGCGGCTTTCAGTAAAT,"Exon (Fam168a-202/Fam168a, exon 5 of 9)",7,100706635,100841381,134747,1,Fam168a-202,117579,Fam168a-202;Fam168a-208;Fam168a-204;Fam168a-201;Fam168a-205;Fam168a-206;Fam168a-210,Fam168a;Fam168a;Fam168a;Fam168a;Fam168a;Fam168a;Fam168a,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,5,319604,ENSMUSG00000029461,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10405,cg22743466,-0.00000689,0.00000621,-1.111063504,0.267402008,loss,ns,0.0000135,0.0000105,1.282875462,0.200494028,pos,ns,0.005836673,0.003088446,1.889841082,0.05971203,pos,ns,1.223938166,-0.0000523,0.000106211,-0.49205114,0.623031449,neg,ns,0.91771665,Mxi1,Mxi1_Exon,19,53370301,53370350,53370301,53370302,50,+,CGAATACGAATGGACAGCATTGGATCAACTATTTCTTCAGATCGTTCTGA,"Exon (Mxi1-201/Mxi1, exon 5 of 6)",19,53310518,53373293,62776,1,Mxi1-201,59783,Gm10197-201;Mxi1-201;Mxi1-208;Mxi1-203;Mxi1-202;Mxi1-205;Mxi1-206;Mxi1-204;Mxi1-207,Gm10197;Mxi1;Mxi1;Mxi1;Mxi1;Mxi1;Mxi1;Mxi1;Mxi1,1416;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,10,17859,ENSMUSG00000025025,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1466,cg09789218,-0.00000537,0.00000198,-2.715188345,0.006995076,loss,ns,0.00000431,0.00000336,1.282821479,0.20051292,pos,ns,0.001152277,0.000983774,1.17128195,0.242384952,pos,ns,0.615494345,-0.0000674,0.0000338,-1.993052284,0.047132037,neg,ns,0.946018883,Usp9x,Usp9x_Exon,X,13104742,13104791,13104790,13104791,50,+,AGTGTTCAGTTGCCTGAAGATGAACTCTTTGCTCGTTCTCCAGATCCTCG,"Exon (Usp9x-206/Usp9x, exon 7 of 17)",20,13071498,13123449,51952,1,Usp9x-206,33244,Usp9x-206;Usp9x-204;Usp9x-201,Usp9x;Usp9x;Usp9x,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,10,22284,ENSMUSG00000031010,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12120,cg05362744,0.0000961,0.0000149,6.440803048,4.53E-10,gain,yes,-0.0000325,0.0000254,-1.282717205,0.200549416,neg,ns,0.033617288,0.007428718,4.525314716,0.0000086,pos,ns,5.06528724,-0.000536881,0.000255473,-2.101519129,0.03640226,neg,ns,0.380328038,Hnrnph3,Hnrnph3_Exon,10,63018816,63018865,63018864,63018865,50,+,AGCAAACTGCACGAAGGCCTCCCCTGTGCTTCTCCCCTGGTAGTCCATCG,"Exon (Hnrnph3-201/Hnrnph3, exon 3 of 10)",10,63014664,63023894,9231,2,Hnrnph3-201,5029,Hnrnph3-201;Hnrnph3-202;Hnrnph3-204;Hnrnph3-205;Hnrnph3-206;Hnrnph3-203;Rufy2-202;Rufy2-205,Hnrnph3;Hnrnph3;Hnrnph3;Hnrnph3;Hnrnph3;Hnrnph3;Rufy2;Rufy2,0;0;0;-2648;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,7,432467,ENSMUSG00000020069,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21182,cg09706376,0.0000134,0.00000207,6.484427627,3.51E-10,gain,yes,-0.00000452,0.00000352,-1.282616799,0.200584563,neg,ns,0.002208659,0.001032097,2.139973364,0.033137275,pos,ns,1.47968321,-0.000115903,0.0000355,-3.265442665,0.001215274,neg,ns,0.032137084,Mpped2,Mpped2_Exon,2,106650318,106650367,106650366,106650367,50,+,TGATTGGAGACCACCCCCTGCCTCCGATCAAATCAGACAGTAATAACACG,"Exon (BB218582-201/BB218582-201, exon 1 of 7)",2,106693269,106868356,175088,1,Mpped2-202,-42902,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,16,33,77015,ENSMUSG00000016386,conserved gene but different region,2,106650342,106650531,190,*,190,11,0.547368421,0.791666667,0.057894737,0.00000285,CpGisland,TRUE,U2,Pr-W
2837,cg00522668,0.0000478,0.0000114,4.182844006,0.0000375,gain,ns,-0.0000249,0.0000194,-1.282541606,0.200610887,neg,ns,0.00736523,0.005687547,1.294974701,0.196292575,pos,ns,0.707096128,-0.000110072,0.000195594,-0.56275589,0.574007867,neg,ns,0.436689553,Ccdc178,Ccdc178_Intron,18,21940478,21940527,21940478,21940479,50,-,CGGCTGTAAACATGACAAATGCCTGCTATTGATTTCAGGTTTAATTACTC,"Intron (Ccdc178-204/Ccdc178, intron 21 of 23)",18,21810893,22171442,360550,2,Ccdc178-204,230915,Ccdc178-204;Ccdc178-201;Ccdc178-202,Ccdc178;Ccdc178;Ccdc178,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,19,21,70950,ENSMUSG00000024306,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27588,cg07158563,-0.000000344,0.00000126,-0.273677742,0.784514537,loss,ns,0.00000274,0.00000213,1.28248199,0.20063176,pos,ns,0.001094375,0.000625142,1.75060319,0.081003483,pos,ns,1.091496309,-0.0000524,0.0000215,-2.435057895,0.015453101,neg,ns,0.969906921,Uhmk1,Uhmk1_Exon,1,170212440,170212489,170212440,170212441,50,-,CGAAACACTGACATCCAGGAGTTCAAGCAACAGACAGCGTGATGGCACAT,"Exon (Uhmk1-203/Uhmk1, exon 2 of 8)",1,170193420,170214734,21315,2,Uhmk1-203,2245,Uhmk1-203;Uhmk1-201;Uhmk1-202,Uhmk1;Uhmk1;Uhmk1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,16589,ENSMUSG00000026667,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15773,cg10894546,-0.00001,0.00000666,-1.50637241,0.132989887,loss,ns,0.0000145,0.0000113,1.282362093,0.200673743,pos,ns,0.004534293,0.003313421,1.368462858,0.172158165,pos,ns,0.764072376,-0.000268893,0.000113948,-2.359781176,0.018905211,neg,ns,0.8240198,Gm48156,Gm48156_Intergenic_upstream,13,83333783,83333832,83333831,83333832,50,+,CTTTAAACTTTATTTATAGCCTTGCAAAAGACTAGCATTCACATAACCCG,Distal Intergenic,13,83189565,83189709,145,2,Gm48156-201,-144074,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,16,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7156,cg27344462,0.0000815,0.0000106,7.712585925,1.70E-13,gain,yes,0.000023,0.000018,1.282290414,0.200698845,pos,ns,0.003062505,0.005262123,0.581990424,0.560996126,pos,ns,0.251040137,0.0000241,0.000180964,0.133135276,0.894172777,pos,ns,0.91567217,Fam219a,Fam219a_Exon,4,41520352,41520401,41520352,41520353,50,-,CGGTAGCCGTCCTTCAGCAGCTGGATGTTCAAATCTTGGTTGATCTGCTG,"Exon (Fam219a-201/Fam219a, exon 6 of 6)",4,41517691,41569509,51819,2,Fam219a-201,49108,1110017D15Rik-201;1110017D15Rik-202;1110017D15Rik-207;Fam219a-201;Fam219a-202;Fam219a-203;Fam219a-204;Fam219a-205,1110017D15Rik;1110017D15Rik;1110017D15Rik;Fam219a;Fam219a;Fam219a;Fam219a;Fam219a,-3019;-3019;-3024;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,7,71901,ENSMUSG00000028439,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20132,cg13044883,0.0000246,0.00000526,4.68221046,0.00000425,gain,ns,0.0000115,0.00000894,1.282289846,0.200699043,pos,ns,0.006018355,0.002618552,2.298352575,0.022207,pos,ns,1.653510112,-0.0000449,0.0000901,-0.498703728,0.618341788,neg,ns,0.11792407,Calcoco1,Calcoco1_Intergenic_downstream,15,102694513,102694562,102694513,102694514,50,-,CGACAAGTGCGGGCATGATGGAGCCCATTAAAATGTTGGGAGATTGTTTT,Distal Intergenic,15,102706972,102709902,2931,2,Calcoco1-203,15389,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,29,67488,ENSMUSG00000023055,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
17870,cg27504803,-0.00000652,0.00000289,-2.254472805,0.024864232,loss,ns,0.0000063,0.00000491,1.282178073,0.200738191,pos,ns,-0.000969793,0.001439625,-0.673642966,0.501040271,neg,ns,0.300127367,-0.0000179,0.0000495,-0.361281011,0.718135484,neg,ns,0.925978607,Hdac4,Hdac4_Promoter,1,92195247,92195296,92195295,92195296,50,+,AACTTTTTACCATACTGCTAAATTAACTTGTCAAAAGGCTTCAAACTTCG,Promoter (<=1kb),1,92030144,92195694,165551,2,Hdac4-212,398,Hdac4-212;Hdac4-211,Hdac4;Hdac4,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,1,3,208727,ENSMUSG00000026313,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13166,cg06172050,-0.0000513,0.0000137,-3.732064576,0.000225873,loss,ns,0.0000299,0.0000233,1.282042155,0.200785803,pos,ns,-0.001636165,0.006835644,-0.239357814,0.810986313,neg,ns,0.090986475,-0.000166164,0.000235077,-0.706848383,0.480191671,neg,ns,0.759291904,Tcf4,Tcf4_Exon,18,69595591,69595640,69595639,69595640,50,-,CAAGATCGCTCTGTCACAGGAAATGTATTTATAGGAACTGTTTTAAGGCG,"Exon (Tcf4-241/Tcf4, exon 1 of 1)",18,69344146,69684343,340198,1,Tcf4-201,251445,Tcf4-201;Tcf4-207;Tcf4-240;Tcf4-254;Tcf4-246;Tcf4-206;Tcf4-202;Tcf4-257;Tcf4-232;Tcf4-248;Tcf4-231;Tcf4-205;Tcf4-253;Tcf4-238;Tcf4-249;Tcf4-219;Tcf4-227;Tcf4-250;Tcf4-229;Tcf4-260;Tcf4-226;Tcf4-216;Tcf4-256;Tcf4-230;Tcf4-221;Tcf4-234;Tcf4-258;Tcf4-217;Tcf4-247;Tcf4-252;Tcf4-218;Tcf4-243;Tcf4-237;Tcf4-239;Tcf4-262;Tcf4-223;Tcf4-212;Tcf4-204;Tcf4-225;Tcf4-222;Tcf4-261;Tcf4-255;Tcf4-203;Tcf4-241;Tcf4-236;Tcf4-228;Tcf4-220;Tcf4-242;Tcf4-213,Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,66,21413,ENSMUSG00000053477,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9540,cg03787614,-0.0000636,0.0000117,-5.421858932,0.000000119,loss,yes,0.0000255,0.0000199,1.281831189,0.20085972,pos,ns,-0.003858307,0.005835938,-0.66112883,0.509020742,neg,ns,0.29326452,-0.000279497,0.000200697,-1.392627977,0.164730329,neg,ns,0.756264456,Grik2,Grik2_Exon,10,49244318,49244367,49244318,49244319,50,-,CGTATACCTTGCTGCATGAGAGCTCCAACTCCAAACCAGAAACTATTTAG,"Exon (Grik2-207/Grik2, exon 13 of 17)",10,49094833,49788766,693934,2,Grik2-207,544399,Grik2-207;Grik2-203;Grik2-202;Grik2-205;Grik2-209;Grik2-204;Grik2-201;Grik2-208,Grik2;Grik2;Grik2;Grik2;Grik2;Grik2;Grik2;Grik2,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,12,14806,ENSMUSG00000056073,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9961,cg16807421,-0.0000236,0.00000675,-3.499737473,0.000533981,loss,ns,0.0000147,0.0000115,1.281791282,0.200873705,pos,ns,-0.006113218,0.003358308,-1.820326876,0.069673376,neg,ns,1.156933147,0.000289711,0.000115492,2.508497637,0.012634908,pos,ns,0.781318029,Satb1,Satb1_Intron,17,51760604,51760653,51760604,51760605,50,-,CGTGTGTAAATAAAATTAATTACAAGCGAGAGGGTGAAGGCTTCAGTGAC,"Intron (Satb1-208/Satb1, intron 9 of 10)",17,51736187,51832672,96486,2,Satb1-208,72019,Satb1-208;Satb1-213;Satb1-204;Satb1-214;Satb1-203;Satb1-211;Satb1-207,Satb1;Satb1;Satb1;Satb1;Satb1;Satb1;Satb1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,28,36,20230,ENSMUSG00000023927,conserved gene and region,17,51760544,51760676,133,*,133,9,0.541353384,0.93515625,0.067669173,0.00000959,CpGisland,TRUE,U15,NS
10805,cg03558754,0.0000051,0.00000907,0.562707612,0.574040705,gain,ns,0.0000198,0.0000154,1.281704226,0.200904214,pos,ns,0.012159917,0.004515042,2.693201454,0.007462012,pos,ns,2.127144037,-0.000399217,0.000155272,-2.571082601,0.010604324,neg,ns,0.774093405,Gm12507,Gm12507_Intergenic_upstream,4,55481045,55481094,55481045,55481046,50,+,CGTGGTGTCTGTGGCCAGAATAGGACCCACATAATAATGGCTTAGCTCAG,Distal Intergenic,4,55508294,55508708,415,1,Gm12507-201,-27200,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
428,cg25806258,-0.0000641,0.0000285,-2.245054678,0.025469354,loss,ns,0.0000621,0.0000485,1.281409896,0.20100739,pos,ns,0.058021521,0.014200451,4.085892912,0.000056,pos,ns,4.252059815,-0.002023796,0.000488352,-4.144130813,0.0000441,neg,ns,0.415882778,Gm48599,Gm48599_Intergenic_upstream,12,5734958,5735007,5734958,5734959,50,-,CGATCCAATCTAATCCTTGAAGATAAAGATGAAACCAGAAAATTGCATGT,Distal Intergenic,12,5591204,5591532,329,2,Gm48599-201,-143475,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6442,cg03169371,0.0000361,0.00000456,7.926271528,4.11E-14,gain,yes,-0.00000993,0.00000775,-1.281397007,0.201011909,neg,ns,0.004587383,0.002269453,2.021360409,0.044101519,pos,ns,1.355546452,-0.000132966,0.000078,-1.703675081,0.089443945,neg,ns,0.107646816,Tenm2,Tenm2_Promoter,11,37236225,37236274,37236273,37236274,50,+,CACCCAGGACCAATGTGCAACCTGCTCTGGAATCAAACCCATAACACACG,Promoter (<=1kb),11,36944205,37235964,291760,2,Tenm2-207,-261,Tenm2-202;Tenm2-207,Tenm2;Tenm2,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,6,84,23964,ENSMUSG00000049336,mapped to different genes,11,37236273,37236997,725,*,725,69,0.655172414,0.90076707,0.095172414,6.48E-51,CpGisland,TRUE,U3,Pr-B
5332,cg19490722,-0.00000955,0.00000486,-1.965917788,0.050200308,loss,ns,0.0000106,0.00000825,1.281062858,0.201129092,pos,ns,0.005107044,0.002416795,2.113147681,0.035387046,pos,ns,1.451155687,-0.000269267,0.0000831,-3.239752979,0.001326246,neg,ns,0.922534064,Ranbp17,Ranbp17_Exon,11,33500718,33500767,33500718,33500719,50,-,CGGCTGACAAGTTTTGAAAGACATGTTGCTGCAAGGAGCTGAGCATAGGA,"Exon (Ranbp17-202/Ranbp17, exon 3 of 28)",11,33211795,33513746,301952,2,Ranbp17-202,12979,Ranbp17-202;Ranbp17-203;Ranbp17-201;Ranbp17-204,Ranbp17;Ranbp17;Ranbp17;Ranbp17,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,31,66011,ENSMUSG00000040594,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6671,cg11755934,0.000190049,0.0000173,10.99430687,5.82E-24,gain,yes,-0.0000376,0.0000294,-1.281051552,0.201133058,neg,ns,0.038566264,0.008603484,4.482633091,0.0000104,pos,ns,4.983394453,-0.001413925,0.000295873,-4.778821686,0.00000273,neg,ns,0.312027494,Uri1,Uri1_Intron,7,37970971,37971020,37971019,37971020,50,+,TTGACAGATTTCATCCGAGCATGGTCACATAACAGCATAAAACTATGTCG,"Intron (Uri1-201/Uri1, intron 4 of 10)",7,37959992,38019542,59551,2,Uri1-201,48522,Uri1-201;Uri1-204;Uri1-206;Uri1-207;Uri1-205,Uri1;Uri1;Uri1;Uri1;Uri1,0;-1343;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,27,19777,ENSMUSG00000030421,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15185,cg14331911,-0.00000141,0.00000106,-1.324941284,0.186166407,loss,ns,0.00000231,0.00000181,1.280910494,0.201182542,pos,ns,0.000560555,0.000528987,1.059675544,0.290117174,pos,ns,0.537426562,-0.00000858,0.0000182,-0.471556038,0.637575419,neg,ns,0.978303222,Ddx17,Ddx17_threeUTR,15,79533049,79533098,79533049,79533050,50,-,CGGCCTCCTTTCGAAAACTCCGCCTTCTGACACGGGACCACTGGAGCGCG,3' UTR,15,79527736,79546741,19006,2,Ddx17-201,13643,Ddx17-201;Ddx17-203;Ddx17-204;Ddx17-202,Ddx17;Ddx17;Ddx17;Ddx17,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,9,14,67040,ENSMUSG00000055065,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21406,cg07238438,-0.0000153,0.00000425,-3.591142244,0.000382669,loss,ns,0.00000924,0.00000721,1.280904358,0.201184694,pos,ns,-0.00207844,0.002113558,-0.983384117,0.326185288,neg,ns,0.486535631,-0.0000677,0.0000727,-0.931483799,0.352328212,neg,ns,0.910593963,Gm9006,Gm9006_Intergenic_downstream,12,107692738,107692787,107692738,107692739,50,+,CGGGCTCCCCTGCCTAGAAGCCAAGGCCGATTAATATCTGCCTACCTTGT,Distal Intergenic,12,107613000,107613840,841,1,Gm9006-201,79738,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,4,108167974,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17410,cg05513929,0.000014,0.00000242,5.797404954,1.66E-08,gain,yes,-0.00000527,0.00000411,-1.280792203,0.201224045,neg,ns,0.00190575,0.0012046,1.582060378,0.114655466,pos,ns,0.940605237,-0.0000671,0.0000414,-1.619023771,0.106459026,neg,ns,0.94018461,Nrxn1,Nrxn1_Exon,17,90162382,90162431,90162430,90162431,50,+,TTCCCGCCAATTATTATGGTTGCTTGGCTATTGAAGATTGTGAGCTGACG,"Exon (Nrxn1-202/Nrxn1, exon 19 of 21)",17,90033631,91088907,1055277,2,Nrxn1-202,926476,Nrxn1-202;Nrxn1-207;Nrxn1-216;Nrxn1-204;Nrxn1-217;Nrxn1-209;Nrxn1-201;Nrxn1-213;Nrxn1-206;Nrxn1-223;Nrxn1-219,Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,22,27,18189,ENSMUSG00000024109,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9578,cg08317235,0.000138786,0.0000106,13.07661498,2.03E-31,gain,yes,-0.0000231,0.000018,-1.280693309,0.201258749,neg,ns,0.016142456,0.005282331,3.055934524,0.002438676,pos,ns,2.612845939,-0.000200593,0.000181659,-1.104228022,0.270350594,neg,ns,0.113318332,Foxg1,Foxg1_Exon,12,49385453,49385502,49385453,49385454,50,-,CGTCGGCCTACCCCAGCCACCCCATGCCCTACAGCTCCGTGTTGACTCAG,"Exon (Foxg1-204/Foxg1, exon 1 of 1)",12,49382883,49386855,3973,1,Foxg1-204,2570,Foxg1-202;Foxg1-203;Foxg1-204;Foxg1-201;Gm43517-201,Foxg1;Foxg1;Foxg1;Foxg1;Gm43517,0;2653;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,27,15228,ENSMUSG00000020950,conserved gene and region,12,49385116,49385808,693,*,693,72,0.670995671,0.980968858,0.103896104,4.68E-56,CpGisland,TRUE,U13,Hc-P
13366,cg20463887,0.0000577,0.0000122,4.741179565,0.00000324,gain,ns,0.0000265,0.0000207,1.280405566,0.201359745,pos,ns,0.023748524,0.006057109,3.920768716,0.000108694,pos,ns,3.963793278,-0.000920253,0.000208303,-4.41784824,0.0000138,neg,ns,0.13360125,Nr2f2,Nr2f2_Intergenic_downstream,7,70346587,70346636,70346587,70346588,50,-,CGAAGTACAGAGACATCTCAATGAAATTTCCAAAGAAGAAAGAGAAATCA,Distal Intergenic,7,70353074,70355237,2164,2,Nr2f2-203,8650,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,19,69,11819,ENSMUSG00000030551,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
19749,cg21489919,-0.0000229,0.00000939,-2.442527446,0.015143025,loss,ns,0.0000204,0.000016,1.280241058,0.201417504,pos,ns,-0.001151653,0.004674577,-0.24636523,0.805562571,neg,ns,0.093900721,-0.000168269,0.000160758,-1.046719934,0.296044203,neg,ns,0.707566275,Scn8a,Scn8a_Exon,15,101029601,101029650,101029601,101029602,50,+,CGCCATCCCCTCCATCATGAATGTGCTGCTGGTGTGTCTCATCTTCTGGC,"Exon (Scn8a-201/Scn8a, exon 22 of 27)",15,100870683,101045929,175247,1,Scn8a-201,158918,Scn8a-201;Scn8a-204;Scn8a-213;Scn8a-203;Scn8a-205;Scn8a-208;Scn8a-209,Scn8a;Scn8a;Scn8a;Scn8a;Scn8a;Scn8a;Scn8a,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,18,24,20273,ENSMUSG00000023033,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19726,cg15920677,-0.0000148,0.000011,-1.340526228,0.181055874,loss,ns,0.000024,0.0000187,1.28018827,0.20143604,pos,ns,0.005556846,0.00549162,1.011877296,0.312385849,pos,ns,0.505308647,-0.000291054,0.000188856,-1.541139591,0.124302941,neg,ns,0.589894063,Gpat3,Gpat3_Intergenic_downstream,5,100937731,100937780,100937731,100937732,50,-,CGAGATGGGCTATAATTGGCCTTCATTGATTTTGTTTTCATTGAGCTAAA,Distal Intergenic,5,100846417,100846850,434,1,Gpat3-205,91363,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,15,15,231510,ENSMUSG00000029314,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3146,cg12713030,-0.0000582,0.0000123,-4.724331465,0.00000351,loss,ns,-0.0000268,0.0000209,-1.280141393,0.201452502,neg,ns,-0.023083545,0.00612928,-3.766110484,0.000198375,neg,ns,3.702513634,0.000154983,0.000210785,0.735263523,0.462734905,pos,ns,0.605752593,Gm11879,Gm11879_Intergenic_downstream,4,22986983,22987032,22986983,22986984,50,-,CGTGGGATAACAATTTATGAGCAATTAAAAATGAAGGGACACAAAACATT,Distal Intergenic,4,22704057,22704758,702,1,Gm11879-201,282975,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,19,19,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5095,cg09117664,0.0000939,0.0000278,3.377419265,0.000825011,gain,ns,-0.0000605,0.0000472,-1.279857293,0.20155229,neg,ns,0.029440128,0.013840782,2.127056588,0.034204722,pos,ns,1.46591394,-0.00156149,0.000475983,-3.280555681,0.001154082,neg,ns,0.156911233,Bach2,Bach2_Intron,4,32303885,32303934,32303885,32303886,50,-,CGGGTAATTCGAGCCAGAGAAAGGGCAGAGCTCCAGGTCCTTTCCACAAA,"Intron (Bach2-202/Bach2, intron 1 of 6)",4,32238804,32586104,347301,1,Bach2-202,65081,Bach2-202;Bach2-201;Bach2-205;Bach2-206,Bach2;Bach2;Bach2;Bach2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,14,12014,ENSMUSG00000040270,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16143,cg13644292,0.0000292,0.000011,2.644971477,0.008586016,gain,ns,-0.000024,0.0000188,-1.279598828,0.201643106,neg,ns,-0.005068059,0.005498445,-0.921725993,0.357388287,neg,ns,0.446859685,-0.0000866,0.000189091,-0.457921029,0.647329982,neg,ns,0.344302317,Lhx1,Lhx1_fiveUTR,11,84522155,84522204,84522155,84522156,50,-,CGCCAGTGGAGAGCTGCTTGTTACACATCATGCAGGTGAAGCAGTTCAGG,5' UTR,11,84518284,84525535,7252,2,Lhx1-201,3331,Lhx1-201;Lhx1-204;Lhx1-203;Lhx1-202,Lhx1;Lhx1;Lhx1;Lhx1,0;0;-88;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,23,16869,ENSMUSG00000018698,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18393,cg22465235,0.00000761,0.0000062,1.227620517,0.220520815,gain,ns,0.0000135,0.0000105,1.279531974,0.201666601,pos,ns,-0.00161125,0.003084237,-0.522414476,0.601754899,neg,ns,0.220580365,0.000056,0.000106067,0.527760257,0.598043283,pos,ns,0.922016403,Arhgef9,Arhgef9_fiveUTR,X,95112404,95112453,95112452,95112453,50,+,ATCTCATTGATGACATTGGCCCGCATCTGGTCCCGGTTCTGTAGTGGCCG,5' UTR,20,95048935,95166361,117427,2,Arhgef9-202,53908,Arhgef9-202;Arhgef9-217;Arhgef9-205;Arhgef9-207;Arhgef9-210;Arhgef9-203;Arhgef9-209;Arhgef9-206;Arhgef9-208;Arhgef9-204;Arhgef9-216;Arhgef9-219;Arhgef9-201;Arhgef9-218;Arhgef9-220;Arhgef9-213;Arhgef9-214,Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,8,14,236915,ENSMUSG00000025656,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2685,cg26757820,0.000108023,0.0000165,6.539140708,2.55E-10,gain,yes,-0.0000359,0.0000281,-1.279211819,0.201779143,neg,ns,0.020429791,0.008221868,2.484811436,0.013489388,pos,ns,1.870007753,-0.000466269,0.000282749,-1.64905451,0.100149423,neg,ns,0.181012361,Adk,Adk_Intron,14,21369309,21369358,21369309,21369310,50,+,CGCCTACAGATGTTATTTATTGAATTTTGAAAAGCCTCTTGGGAAGCCAA,"Intron (Adk-201/Adk, intron 8 of 10)",14,21052574,21448569,395996,1,Adk-201,316735,Adk-201;Adk-206;Adk-207;Adk-209,Adk;Adk;Adk;Adk,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,10,11534,ENSMUSG00000039197,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2352,cg25787888,0.0000561,0.0000058,9.664197999,1.74E-19,gain,yes,-0.0000126,0.00000986,-1.279184556,0.201788729,neg,ns,0.006542154,0.00288875,2.264700469,0.024221305,pos,ns,1.615802469,-0.000220109,0.0000993,-2.215625039,0.027443473,neg,ns,0.061671455,Tfap2d,Tfap2d_Exon,1,19104735,19104784,19104735,19104736,50,+,CGATGCCTACCGCCGCCATGACCTGTCCCTCATGAGCCATGGCTCTCAGT,"Exon (Tfap2d-201/Tfap2d, exon 2 of 8)",1,19103022,19166346,63325,1,Tfap2d-201,1713,Tfap2d-201;Tfap2d-202,Tfap2d;Tfap2d,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,14,23,226896,ENSMUSG00000042596,conserved gene and region,1,19104477,19104754,278,*,278,20,0.615107914,0.848336894,0.071942446,1.04E-12,CpGisland,TRUE,U13,Hc-P
26247,cg00901683,-0.0000136,0.00000583,-2.326887858,0.020615249,loss,ns,0.0000127,0.0000099,1.278889826,0.201892378,pos,ns,-0.000499837,0.002901015,-0.172297448,0.863316119,neg,ns,0.06383015,-0.0000179,0.0000998,-0.179680134,0.857521079,neg,ns,0.060368112,Cpsf4,Cpsf4_Exon,5,145167359,145167408,145167407,145167408,50,+,GCAGGAAATCATCGCCAGCGTGGACCACATCAAGTTTGACTTGGAGATCG,Promoter (<=1kb),5,145167213,145182041,14829,1,Cpsf4-205,146,Cpsf4-205;Cpsf4-201;Cpsf4-202;Cpsf4-207;Cpsf4-204;Cpsf4-206;Cpsf4-203;Ptcd1-201;Ptcd1-202,Cpsf4;Cpsf4;Cpsf4;Cpsf4;Cpsf4;Cpsf4;Cpsf4;Ptcd1;Ptcd1,0;0;0;0;0;0;0;-251;-403,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,54188,ENSMUSG00000029625,mapped to different genes,5,145166914,145167490,577,*,577,61,0.663778163,0.981511433,0.105719237,4.34E-48,CpGisland,TRUE,U1,Pr-A
12561,cg01118731,0.00000425,0.0000064,0.663245898,0.507665965,gain,ns,-0.0000139,0.0000109,-1.278874071,0.20189792,neg,ns,-0.000490917,0.003187026,-0.154035959,0.877681612,neg,ns,0.056663,-0.000115646,0.000109602,-1.055148018,0.292179271,neg,ns,0.889689146,Pikfyve,Pikfyve_threeUTR,1,65224247,65224296,65224247,65224248,50,-,CGTGGAGCTGGACAACGTGAACTTCCATATCAAGAAGCCCTCCAAGTACC,3' UTR,1,65186689,65246898,60210,1,Pikfyve-209,37558,Pikfyve-209;Pikfyve-207;Pikfyve-201;Pikfyve-205;Pikfyve-202,Pikfyve;Pikfyve;Pikfyve;Pikfyve;Pikfyve,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,4,18711,ENSMUSG00000025949,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19326,cg16734637,-0.0000251,0.00000342,-7.325319984,2.08E-12,loss,yes,0.00000743,0.00000581,1.278628911,0.201984168,pos,ns,-0.001587932,0.001702951,-0.932459451,0.351824789,neg,ns,0.453673565,-0.0000511,0.0000586,-0.873111833,0.383277929,neg,ns,0.930692186,Foxp1,Foxp1_Intron,6,99013988,99014037,99013988,99013989,50,+,CGCATTGAACTGCCACTGATGAGTAAGCCCTGCTGAATTAGAAAAACAGC,"Intron (Foxp1-206/Foxp1, intron 6 of 17)",6,98925338,99266515,341178,2,Foxp1-206,252478,Foxp1-206;Foxp1-204;Foxp1-220;Foxp1-230;Foxp1-225;Foxp1-201;Foxp1-205;Foxp1-207;Foxp1-208;Foxp1-226;Foxp1-228;Foxp1-221;Foxp1-222;Foxp1-210;Foxp1-214;Foxp1-209;Foxp1-203;Foxp1-218;Foxp1-231;Foxp1-215,Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,87,108655,ENSMUSG00000030067,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9937,cg13852425,0.000077,0.000016,4.813570391,0.00000232,gain,ns,-0.0000347,0.0000272,-1.278611678,0.201990232,neg,ns,0.015605441,0.007957102,1.961196584,0.050750988,pos,ns,1.294555495,-0.000558349,0.000273644,-2.040422217,0.042155344,neg,ns,0.383085769,Snx10,Snx10_Intergenic_downstream,6,51657062,51657111,51657062,51657063,50,+,CGCTGCCATGACAACGGCGACAGATGTCAGCTAAGCAATGTGCACCCTAG,Distal Intergenic,6,51544566,51589043,44478,1,Snx10-205,112496,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,10,71982,ENSMUSG00000038301,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8508,cg05642042,0.00000411,0.00000992,0.414631233,0.678698657,gain,ns,0.0000215,0.0000168,1.278595478,0.201995932,pos,ns,0.018134872,0.004935228,3.674575862,0.000280623,pos,ns,3.551876213,-0.000487093,0.000169722,-2.869942344,0.004387684,neg,ns,0.54857196,Lbx1,Lbx1_Intergenic_upstream,19,45248869,45248918,45248917,45248918,50,+,AAATGCTCAACTTTATGTACTTTTAACTAGAGGTGTAACAGATGGCCCCG,Distal Intergenic,19,45232684,45235812,3129,2,Lbx1-201,-13057,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,15,50,16814,ENSMUSG00000025216,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3436,cg08446518,0.00000145,0.00000368,0.394861906,0.693216345,gain,ns,-0.000008,0.00000626,-1.278513668,0.20202472,neg,ns,-0.006383377,0.001833732,-3.481085672,0.000571063,neg,ns,3.243315603,0.000122392,0.0000631,1.940829987,0.053185163,pos,ns,0.043557789,Bcl11a,Bcl11a_Exon,11,24078397,24078446,24078397,24078398,50,-,CGCCGCAAGCAAGGCAAACCCCAGCACTTAAGCAAACGGGAATTCTCGCG,Promoter (<=1kb),11,24078056,24173194,95139,1,Bcl11a-201,341,A830031A19Rik-201;Bcl11a-201;Bcl11a-203;Bcl11a-205;Bcl11a-202;Bcl11a-204,A830031A19Rik;Bcl11a;Bcl11a;Bcl11a;Bcl11a;Bcl11a,0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,51,98,14025,ENSMUSG00000000861,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18218,cg02474352,0.00000201,0.00000207,0.970042369,0.332781607,gain,ns,-0.0000045,0.00000352,-1.278469781,0.202040165,neg,ns,-0.002234806,0.001030929,-2.167759213,0.030937771,neg,ns,1.509510981,0.000077,0.0000355,2.172226231,0.030596181,pos,ns,0.926560345,Ap3b1,Ap3b1_Intron,13,94511581,94511630,94511629,94511630,50,+,TCATAATTTGTTCATTTGGTGCCCATCAGCCCAGCCTCATCTCTCATACG,"Intron (Ap3b1-201/Ap3b1, intron 22 of 26)",13,94358960,94566317,207358,1,Ap3b1-201,152621,Ap3b1-201;Ap3b1-205,Ap3b1;Ap3b1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,55,11774,ENSMUSG00000021686,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26354,cg19923477,0.000000556,0.0000021,0.264444435,0.791613202,gain,ns,0.00000457,0.00000358,1.278148637,0.202153209,pos,ns,0.003181296,0.001047378,3.037392017,0.002589126,pos,ns,2.586846817,-0.000120634,0.000036,-3.349164702,0.000910612,neg,ns,0.95197922,Kiz,Kiz_Intron,2,146958192,146958241,146958240,146958241,50,-,CACTTACTGCAGTCACTCCTTGTGCTTTATTGCTTTTACAAGTGGTCTCG,"Intron (Kiz-201/Kiz, intron 12 of 13)",2,146855864,146970097,114234,1,Kiz-201,102328,Kiz-201;Kiz-202,Kiz;Kiz,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,29,228730,ENSMUSG00000074749,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3851,cg20844381,-0.0000256,0.0000126,-2.026461346,0.043573397,loss,ns,0.0000275,0.0000215,1.278135156,0.202157955,pos,ns,-0.006921843,0.006294883,-1.099598347,0.272360351,neg,ns,0.564856114,0.000178362,0.000216481,0.823916548,0.410620409,pos,ns,0.516864007,Celf4,Celf4_Intron,18,25583207,25583256,25583255,25583256,50,-,AAAAACATTTATTAATATGCAAATTCTAAGTGGCAATCTGGACCCAGTCG,"Intron (Celf4-202/Celf4, intron 2 of 12)",18,25477632,25753983,276352,2,Celf4-202,170727,Celf4-202;Celf4-201;Celf4-203;Celf4-207;Celf4-206;Celf4-209,Celf4;Celf4;Celf4;Celf4;Celf4;Celf4,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,59,108013,ENSMUSG00000024268,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20206,cg22861867,0.0000855,0.00000577,14.8234055,5.99E-38,gain,yes,-0.0000125,0.0000098,-1.278091638,0.202173277,neg,ns,0.005318734,0.002870292,1.853028904,0.064828358,pos,ns,1.188234977,-0.0000282,0.0000987,-0.286097346,0.774994655,neg,ns,0.071255068,Unc79,Unc79_fiveUTR,12,102949346,102949395,102949394,102949395,50,-,GGGGGCGATTTCCTAACCTTCCGGGACCGAATTCTGCAATTTGATGTGCG,Promoter (<=1kb),12,102948859,103184001,235143,1,Unc79-202,487,Unc79-202;Unc79-208,Unc79;Unc79,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,12,24,217843,ENSMUSG00000021198,conserved gene and region,12,102948810,102949512,703,*,703,59,0.644381223,0.809149434,0.083926031,2.91E-40,CpGisland,TRUE,NA,NRS
20192,cg08167680,-0.000000256,0.00000578,-0.044283468,0.96470696,loss,ns,0.0000125,0.00000981,1.278066684,0.202182064,pos,ns,0.00308445,0.002874422,1.073068008,0.284075201,pos,ns,0.546566677,-0.000182842,0.0000989,-1.849673543,0.065312256,neg,ns,0.886378681,Sgip1,Sgip1_Exon,4,102933564,102933613,102933612,102933613,50,+,GTGTCAGAAGACGATGTTTTTTATGACAAACTGCCCTCGTTTGAAAGGCG,"Exon (Sgip1-213/Sgip1, exon 9 of 17)",4,102760135,102971983,211849,1,Sgip1-201,173429,Sgip1-201;Sgip1-202;Sgip1-203;Sgip1-205;Sgip1-213;Sgip1-206;Sgip1-211,Sgip1;Sgip1;Sgip1;Sgip1;Sgip1;Sgip1;Sgip1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,6,73094,ENSMUSG00000028524,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12619,cg00450713,-0.0000126,0.00000349,-3.609471968,0.000357638,loss,ns,-0.00000757,0.00000593,-1.277824303,0.202267422,neg,ns,-0.004339037,0.001736253,-2.499081058,0.012968671,neg,ns,1.887104539,0.000130675,0.0000597,2.188502048,0.02937897,pos,ns,0.936231438,Ccnl1,Ccnl1_threeUTR,3,65946625,65946674,65946673,65946674,50,+,GAGCGACTGCCACCATGGTGCTTGCTTTTATGGGACCTCTCAAAGGAGCG,3' UTR,3,65946151,65958162,12012,2,Ccnl1-203,11488,Ccnl1-203;Ccnl1-214;Ccnl1-202;Ccnl1-201;Ccnl1-205;Ccnl1-206;Ccnl1-212;Ccnl1-207;Ccnl1-213;Ccnl1-211;Ccnl1-208;Ccnl1-204;Ccnl1-209;Ccnl1-210,Ccnl1;Ccnl1;Ccnl1;Ccnl1;Ccnl1;Ccnl1;Ccnl1;Ccnl1;Ccnl1;Ccnl1;Ccnl1;Ccnl1;Ccnl1;Ccnl1,0;0;0;0;0;0;0;0;0;0;0;5194;6319;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,7,7,56706,ENSMUSG00000027829,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4310,cg20514301,0.0000296,0.00000685,4.323617716,0.0000207,gain,ns,0.0000149,0.0000116,1.277798049,0.202276669,pos,ns,0.002699802,0.003409459,0.791856468,0.429049867,pos,ns,0.367492229,0.0000712,0.000117251,0.60690489,0.544358262,pos,ns,0.85376206,Glis3,Glis3_Intron,19,28305415,28305464,28305415,28305416,50,+,CGTTAAGGAGCGAAAATGGGCTGTTACTAAAATGTCAACACAATTGTCCC,"Intron (Glis3-209/Glis3, intron 7 of 10)",19,28258851,28680077,421227,2,Glis3-209,374613,Glis3-209;Glis3-204;Glis3-201;Glis3-210;Glis3-207,Glis3;Glis3;Glis3;Glis3;Glis3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,8,226075,ENSMUSG00000052942,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15500,cg12212553,-0.00000164,0.00000109,-1.500616009,0.134472694,loss,ns,0.00000237,0.00000185,1.277793394,0.202278309,pos,ns,0.000523053,0.000543008,0.963251957,0.336171872,pos,ns,0.473438627,-0.0000197,0.0000187,-1.057193906,0.291246233,neg,ns,0.968210739,Cpeb1,Cpeb1_Exon,7,81355894,81355943,81355894,81355895,50,+,CGGCTGGACATCTTGAAATAATATTCACTCAGGCCATCTGGGCTCAGCGG,"Exon (Cpeb1-201/Cpeb1, exon 8 of 12)",7,81347026,81454758,107733,2,Cpeb1-201,98815,Cpeb1-201;Cpeb1-203;Cpeb1-209;Cpeb1-205,Cpeb1;Cpeb1;Cpeb1;Cpeb1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,12877,ENSMUSG00000025586,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1167,cg01705052,0.0000216,0.00000339,6.368688323,6.87E-10,gain,yes,-0.00000737,0.00000577,-1.277729785,0.202300715,neg,ns,0.000857883,0.001689522,0.507766675,0.611978059,pos,ns,0.213264148,0.0000366,0.0000581,0.629122777,0.529732002,pos,ns,0.032762087,Shisa9,Shisa9_Exon,16,11984845,11984894,11984893,11984894,50,-,AACTGCAGCTCGGGCGACTTCATCTTCTGCTGCGGGACTTGTGGCTTCCG,Promoter (<=1kb),16,11984113,11995390,11278,1,Shisa9-204,732,Shisa9-204;Shisa9-206;Shisa9-202;Shisa9-201;Shisa9-203;Shisa9-205,Shisa9;Shisa9;Shisa9;Shisa9;Shisa9;Shisa9,0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,72555,ENSMUSG00000022494,conserved gene and region,16,11984126,11985055,930,*,930,108,0.701075269,0.95067723,0.116129032,1.48E-89,CpGisland,TRUE,U3,Pr-B
4331,cg06679017,0.00000457,0.00000265,1.72325592,0.085839394,gain,ns,-0.00000576,0.00000451,-1.277402179,0.202416143,neg,ns,-0.001539183,0.001319943,-1.166098533,0.244470957,neg,ns,0.611772728,0.0000594,0.0000454,1.307908731,0.191873306,pos,ns,0.842512769,Samd4b,Samd4b_threeUTR,7,28405974,28406023,28405974,28405975,50,-,CGATGAGCTGGAGGTAACTGGTGATGTTCTCCTCGTCTGGTCGGGACACC,3' UTR,7,28399522,28436191,36670,2,Samd4b-204,30168,Samd4b-204;Samd4b-201;Samd4b-203;Samd4b-202;Samd4b-205,Samd4b;Samd4b;Samd4b;Samd4b;Samd4b,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,9,11,233033,ENSMUSG00000109336,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15302,cg00396618,0.00000636,0.00000383,1.662737054,0.097375768,gain,ns,-0.0000083,0.0000065,-1.277171961,0.202497286,neg,ns,0.002677645,0.00190422,1.406163671,0.160677089,pos,ns,0.794046046,-0.00000588,0.0000655,-0.08975351,0.928541053,neg,ns,0.919854966,Rhot1,Rhot1_Exon,11,80265745,80265794,80265745,80265746,50,+,CGTGACACAAGCTGACCTCAAGAGCTCCACGTTTTGGCTTCGAGCAAGTT,"Exon (Rhot1-203/Rhot1, exon 21 of 21)",11,80209019,80266812,57794,1,Rhot1-203,56726,Rhot1-203;Rhot1-202;Rhot1-204;Rhot1-201;Rhot1-206;Rhot1-207;Rhot1-211;Rhot1-210,Rhot1;Rhot1;Rhot1;Rhot1;Rhot1;Rhot1;Rhot1;Rhot1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,6,59040,ENSMUSG00000017686,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11347,cg24111320,0.00000799,0.0000084,0.950836408,0.342428145,gain,ns,-0.0000182,0.0000143,-1.277119839,0.20251566,neg,ns,-0.005719427,0.004183187,-1.367241632,0.172540121,neg,ns,0.763109902,-0.000027,0.000143859,-0.187908603,0.851071237,neg,ns,0.773760774,Gm49361,Gm49361_fiveUTR,14,57734170,57734219,57734170,57734171,50,-,CGGCTATTTCCAGAATAAGTCGTGGCAGGAAAAGTCTTTGGCCTCATTGT,5' UTR,14,57642077,57746103,104027,2,Gm49361-201,11884,Gm49361-201;Lats2-201;Lats2-209;Lats2-207;Lats2-208;Lats2-202;Lats2-203;Lats2-205;Lats2-204,Gm49361;Lats2;Lats2;Lats2;Lats2;Lats2;Lats2;Lats2;Lats2,0;0;0;0;0;0;0;0;12359,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13957,cg06731994,-0.000037,0.00000535,-6.90828197,2.79E-11,loss,yes,0.0000116,0.00000909,1.277109594,0.202519272,pos,ns,-0.009661586,0.002662842,-3.628298712,0.000333537,neg,ns,3.476856466,0.000147793,0.0000916,1.613899789,0.107566564,pos,ns,0.760811869,Prkch,Prkch_threeUTR,12,73700259,73700308,73700307,73700308,50,+,AGACCCTGGCAGGGATGGGTCTCCAACCCGGAAATATTTCTCCAACCTCG,3' UTR,12,73584796,73778176,193381,1,Prkch-204,115463,Prkch-204;Prkch-201;Prkch-202,Prkch;Prkch;Prkch,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,18755,ENSMUSG00000021108,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5813,cg14084684,-0.000000988,0.00000072,-1.372928192,0.170766977,loss,ns,0.00000156,0.00000122,1.277099304,0.202522899,pos,ns,0.000940946,0.00035822,2.626722691,0.009049496,pos,ns,2.043375589,-0.0000284,0.0000123,-2.303536895,0.021910065,neg,ns,0.007055011,Zfp292,Zfp292_fiveUTR,4,34882930,34882979,34882930,34882931,50,-,CGCTCCGTCGCGTACGCACCTGGGTCACGTGATAACACAATGCCACGTTC,Promoter (<=1kb),4,34803113,34882930,79818,2,Zfp292-202,0,Zfp292-202;Zfp292-201,Zfp292;Zfp292,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,5,30046,ENSMUSG00000039967,conserved gene and region,4,34882327,34883150,824,*,824,108,0.726941748,0.992107023,0.131067961,4.29E-96,CpGisland,TRUE,U1,Pr-A
23841,cg22548438,0.000107149,0.00000808,13.26210795,4.20E-32,gain,yes,-0.0000175,0.0000137,-1.27700514,0.202556098,neg,ns,0.007581663,0.004021175,1.885434831,0.060306126,pos,ns,1.219638566,0.0000756,0.000138288,0.546347905,0.585219804,pos,ns,0.170535824,En1,En1_Promoter,1,120600137,120600186,120600185,120600186,50,+,AAGGGCCGCCGTATTATTCAGCTGGCTTTATCAGCTGGCTGGAAATTACG,Promoter (2-3kb),1,120602418,120607992,5575,1,En1-201,-2232,En1-201,En1,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,23,36,13798,ENSMUSG00000058665,conserved gene and region,1,120600143,120600235,93,*,93,12,0.602150538,1.425287356,0.129032258,7.57E-11,CpGisland,TRUE,U13,Hc-P
20372,cg20999567,0.000013,0.00000213,6.100612301,3.15E-09,gain,yes,-0.00000462,0.00000362,-1.276915553,0.202587687,neg,ns,0.003108439,0.001060025,2.932420048,0.003613802,pos,ns,2.442035696,-0.0000726,0.0000365,-1.991676535,0.047283697,neg,ns,0.014397099,Hoxc5,Hoxc5_Exon,15,103014258,103014307,103014258,103014259,50,+,CGGGGTAGACATGGCTGCCAACCCCCGGGCTCACCCCGACCGCCCCGCCT,"Exon (Hoxc5-201/Hoxc5, exon 1 of 2)",15,102967443,103015676,48234,1,Hoxc5-202,46815,Hoxc4-202;Hoxc5-202;Hoxc5-201;Hoxc6-202;Hoxc6-203;Hoxc6-201,Hoxc4;Hoxc5;Hoxc5;Hoxc6;Hoxc6;Hoxc6,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,72,134,15424,ENSMUSG00000022485,mapped to different genes,15,103014167,103014734,568,*,568,41,0.588028169,0.835773758,0.072183099,1.73E-25,CpGisland,TRUE,U13,Hc-P
24233,cg04711590,0.00000418,0.00000384,1.087856383,0.277503565,gain,ns,0.00000834,0.00000653,1.276704688,0.202662054,pos,ns,0.004837122,0.001912701,2.528949052,0.011936218,pos,ns,1.923133268,-0.0000796,0.0000658,-1.209744239,0.227298756,neg,ns,0.896053307,Abcb9,Abcb9_Exon,5,124083120,124083169,124083120,124083121,50,-,CGAATGTTCAGTCTGGCAAATATGAGGGTAAAAATGCCGCCCCGAATACC,"Exon (Abcb9-201/Abcb9, exon 4 of 12)",5,124061530,124095798,34269,2,Abcb9-201,12629,Abcb9-201;Abcb9-206;Abcb9-202;Abcb9-204;Abcb9-205;Abcb9-203,Abcb9;Abcb9;Abcb9;Abcb9;Abcb9;Abcb9,0;-3989;0;0;-3300;12617,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,56325,ENSMUSG00000029408,conserved gene and region,5,124083099,124083222,124,*,124,10,0.540322581,1.135531136,0.080645161,0.000000493,CpGisland,TRUE,U11,Tr-P
21885,cg10403192,0.00000255,0.00000372,0.685263215,0.493689922,gain,ns,-0.00000806,0.00000632,-1.276162329,0.202853423,neg,ns,-0.000563388,0.001850325,-0.304480622,0.760966051,neg,ns,0.118634718,-0.0000344,0.0000636,-0.541239045,0.588731559,neg,ns,0.912593214,Dhx38,Dhx38_Exon,8,109553131,109553180,109553131,109553132,50,+,CGATGAGCAGGATCTCGGAGCTGCAGCCCATGTCACAGGACACGATGAGC,"Exon (Dhx38-201/Dhx38, exon 21 of 27)",8,109548011,109565861,17851,2,Dhx38-201,12681,Dhx38-201;Dhx38-202,Dhx38;Dhx38,0;-1007,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,64340,ENSMUSG00000037993,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9561,cg06245691,0.0000697,0.00000814,8.567865423,5.04E-16,gain,yes,-0.0000176,0.0000138,-1.276138246,0.202861923,neg,ns,0.010303225,0.004051197,2.543254407,0.01146817,pos,ns,1.940505869,-0.0000678,0.00013932,-0.486352723,0.627060741,neg,ns,0.173702442,Foxg1,Foxg1_Promoter,12,49379719,49379768,49379767,49379768,50,-,GACCTCTTACTGAGAAGTTTAGTTCACTACTGTTCTCGCAAACCTAATCG,Promoter (2-3kb),12,49382660,49384364,1705,1,Foxg1-202,-2941,Foxg1-202;Foxg1-203;Foxg1-204;Foxg1-201,Foxg1;Foxg1;Foxg1;Foxg1,0;-3032;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,11,27,15228,ENSMUSG00000020950,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
27297,cg14053239,0.00000797,0.00000314,2.535356415,0.011724515,gain,ns,-0.00000682,0.00000534,-1.275975152,0.202919498,neg,ns,-0.00386935,0.001564987,-2.472448195,0.013955462,neg,ns,1.855255783,0.0000967,0.0000538,1.79615191,0.073443943,pos,ns,0.87799483,Gdap1l1,Gdap1l1_Exon,2,163453709,163453758,163453757,163453758,50,+,CCCAACCTGCAGTCCTTCTTTGAGAGGGTCCAGAGACGCTTTGCCTTCCG,"Exon (Gdap1l1-202/Gdap1l1, exon 6 of 7)",2,163438476,163455324,16849,1,Gdap1l1-202,15233,Gdap1l1-202;Gdap1l1-203;Gdap1l1-201;Gdap1l1-204,Gdap1l1;Gdap1l1;Gdap1l1;Gdap1l1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,228858,ENSMUSG00000017943,conserved gene and region,2,163453699,163453837,139,*,139,10,0.597122302,0.827380952,0.071942446,0.00000141,CpGisland,TRUE,U11,Tr-P
737,cg10937272,-0.00000331,0.00000109,-3.045175572,0.002524962,loss,ns,0.00000235,0.00000184,1.275898136,0.20294669,pos,ns,0.00065444,0.00054032,1.211207222,0.226738509,pos,ns,0.644474713,-0.0000175,0.0000186,-0.944047224,0.345880693,neg,ns,0.03073263,Nipbl,Nipbl_Promoter,15,8443758,8443807,8443758,8443759,50,+,CGCTCCGCTCAGCCCGGAGCTCTCCTAATCCCCGAGCTCAAGTAGATTCC,Promoter (<=1kb),15,8290617,8444463,153847,2,Nipbl-201,656,Nipbl-201,Nipbl,0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,5,36,71175,ENSMUSG00000022141,conserved gene and region,15,8443623,8444317,695,*,695,79,0.676258993,0.994277539,0.113669065,7.45E-65,CpGisland,TRUE,U1,Pr-A
25044,cg02164609,-0.0000084,0.00000373,-2.248533581,0.025244357,loss,ns,0.00000809,0.00000634,1.275840892,0.202966903,pos,ns,0.002785882,0.001858774,1.498773589,0.134949992,pos,ns,0.869827137,-0.0000905,0.0000639,-1.415157051,0.158026204,neg,ns,0.93008002,Fgfr2,Fgfr2_Intron,7,131793518,131793567,131793566,131793567,50,+,ATTTAATTCCATCTTCAATGGAAAAATGTTCACTCTGATCTAAATTGGCG,"Intron (Fgfr2-217/Fgfr2, intron 2 of 6)",7,130162451,133123350,2960900,2,Fgfr2-217,1329783,Fgfr2-217,Fgfr2,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,58,79,14183,ENSMUSG00000030849,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19760,cg00719335,-0.0000254,0.00000822,-3.092105777,0.002168079,loss,ns,0.0000178,0.000014,1.275772824,0.202990939,pos,ns,-0.003097992,0.004088785,-0.757680439,0.449217869,neg,ns,0.347542976,-0.000109817,0.000140613,-0.780987511,0.435405826,neg,ns,0.865354066,Gpat3,Gpat3_Intergenic_downstream,5,101033928,101033977,101033928,101033929,50,-,CGATTCTATAAAAGTTTAATGATCTACTTCCAGGTCTAGCAGCATTTAGG,Distal Intergenic,5,100846417,100846850,434,1,Gpat3-205,187560,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,15,15,231510,ENSMUSG00000029314,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8019,cg26649176,-0.00000152,0.00000132,-1.146414,0.252508008,loss,ns,0.00000287,0.00000225,1.275529622,0.203076837,pos,ns,-0.0000202,0.0006586,-0.030692822,0.975534267,neg,ns,0.010757471,0.0000224,0.0000226,0.990075928,0.322909155,pos,ns,0.967392811,Pax5,Pax5_Intron,4,44695507,44695556,44695555,44695556,50,+,GAGCTATGAAATTCCAATTTATTGTTGACAACTTAAACGGTCAGGCACCG,"Intron (Pax5-201/Pax5, intron 2 of 9)",4,44524757,44710487,185731,2,Pax5-201,14931,Pax5-201;Pax5-202;Pax5-203;Pax5-204;Pax5-205;Pax5-207;Pax5-206;Pax5-209;Pax5-210;Pax5-212;Pax5-213;Pax5-214;Pax5-215;Pax5-208;Pax5-216;Pax5-217;Pax5-218;Pax5-219,Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,19,45,18507,ENSMUSG00000014030,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6613,cg15809618,0.00000851,0.0000028,3.036094049,0.00259997,gain,ns,-0.00000608,0.00000476,-1.27552313,0.203079131,neg,ns,-0.0000935,0.001395593,-0.066991237,0.946631864,neg,ns,0.023818881,-0.00000835,0.000048,-0.173987356,0.861988962,neg,ns,0.039982715,Msx1,Msx1_Promoter,5,37828088,37828137,37828136,37828137,50,-,AGTCCTCTTTAATAGAATGAATGTGCTATGAAAACCGATTACCCGGAACG,Promoter (3-4kb),5,37820485,37824583,4099,2,Msx1-201,-3554,Msx1-201;Msx1-202,Msx1;Msx1,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,8,14,17701,ENSMUSG00000048450,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
17687,cg15753313,0.0000226,0.00000636,3.548182202,0.000447927,gain,ns,0.0000138,0.0000108,1.275390465,0.203125999,pos,ns,0.007868174,0.003164922,2.486056183,0.013443238,pos,ns,1.871496125,-0.000124602,0.000108841,-1.144806981,0.253172219,neg,ns,0.127440044,Zic4,Zic4_threeUTR,9,91386667,91386716,91386715,91386716,50,-,GGCAATGTGCAAGTCGCACTGAAATCCTGAAAGGCCAAGCCTGGAGCCCG,3' UTR,9,91368970,91387793,18824,1,Zic4-204,17697,Zic4-204;Zic4-209;Zic4-205;Zic4-201;Zic4-202,Zic4;Zic4;Zic4;Zic4;Zic4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,18,55,22774,ENSMUSG00000036972,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
13359,cg07481714,-0.00000864,0.00000154,-5.608656449,4.52E-08,loss,yes,0.00000334,0.00000262,1.275345339,0.203141943,pos,ns,-0.0000958,0.000767024,-0.124848229,0.900724625,neg,ns,0.045407964,-0.0000203,0.0000264,-0.770673737,0.441487293,neg,ns,0.952672415,Upf1,Upf1_Exon,8,70339997,70340046,70340045,70340046,50,-,TGACTAAATCCTCATTACCAGAGTCAGTCTTGGGCAAAGTGAAGTAGGCG,"Exon (Upf1-202/Upf1, exon 7 of 24)",8,70331525,70353211,21687,2,Upf1-202,13165,Upf1-202;Upf1-201,Upf1;Upf1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,19704,ENSMUSG00000058301,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9387,cg07274543,-0.000000946,0.00000144,-0.658657192,0.510604823,loss,ns,-0.00000311,0.00000244,-1.275278493,0.203165563,neg,ns,-0.000228111,0.000714796,-0.319127878,0.749844475,neg,ns,0.125028804,-0.000000525,0.0000246,-0.021374069,0.98296101,neg,ns,0.967069744,Tmem260,Tmem260_threeUTR,14,48513703,48513752,48513703,48513704,50,+,CGGAACCTTTTGAAGAGTGTCAATAGTTGTAACAGTTCAGCTGTTAGGAA,3' UTR,14,48446124,48520368,74245,1,Tmem260-210,67579,Tmem260-210;Tmem260-202;Tmem260-209;Tmem260-201;Tmem260-204,Tmem260;Tmem260;Tmem260;Tmem260;Tmem260,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,11,218989,ENSMUSG00000036339,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22571,cg17918499,0.0000013,0.00000135,0.962568034,0.336514569,gain,ns,0.00000292,0.00000229,1.275240379,0.203179032,pos,ns,0.001529318,0.00067081,2.279808913,0.02329807,pos,ns,1.632680047,-0.0000243,0.0000231,-1.052691685,0.293302158,neg,ns,0.962717494,Rpl19-ps10,Rpl19-ps10_Intergenic_downstream,7,115223708,115223757,115223756,115223757,50,-,TTTTCTGCAAAATCACATGCTCGTTTGAACGTAAACATTTTGCACTTCCG,Distal Intergenic,7,115172056,115172385,330,1,Rpl19-ps10-201,51701,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,29,668472,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7035,cg20025626,0.0000316,0.00000377,8.369032135,2.02E-15,gain,yes,-0.00000817,0.00000641,-1.275229282,0.203182953,neg,ns,0.005339245,0.001876454,2.845390703,0.004731062,pos,ns,2.325041331,-0.000150813,0.0000645,-2.337057943,0.020072604,neg,ns,0.047829746,Tfap2a,Tfap2a_Intergenic_downstream,13,40709203,40709252,40709251,40709252,50,+,TTTGGCCCGGGGCGACACTTCCCCCCGGCTGAGCTTAGAGAATGGGAGCG,Distal Intergenic,13,40716724,40728944,12221,2,Tfap2a-209,19692,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,15,57,21418,ENSMUSG00000021359,mapped to different genes,13,40709088,40709361,274,*,274,22,0.653284672,0.763037975,0.080291971,5.99E-15,CpGisland,TRUE,U13,Hc-P
5224,cg21525549,-0.00010014,0.0000115,-8.695896567,2.05E-16,loss,yes,0.0000249,0.0000196,1.275101398,0.203228149,pos,ns,-0.020436428,0.005731526,-3.565617071,0.000420275,neg,ns,3.376466073,0.000503212,0.000197107,2.552990492,0.011159053,pos,ns,0.747599388,Lrrc18,Lrrc18_Intergenic_upstream,14,32950877,32950926,32950925,32950926,50,+,TTTATTTCAATACCTCAATTACTCTGAACTCTCAAATGTCAAAGTGCTCG,Distal Intergenic,14,32991382,33015291,23910,1,Lrrc18-201,-40456,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,67580,ENSMUSG00000041673,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19301,cg24378441,-0.00000468,0.00000324,-1.441551392,0.150438368,loss,ns,0.00000703,0.00000551,1.274993996,0.203266113,pos,ns,0.004793735,0.001614667,2.968869288,0.003222103,pos,ns,2.491860596,-0.000118604,0.0000555,-2.135921179,0.033469022,neg,ns,0.940036388,Dock7,Dock7_threeUTR,4,98946705,98946754,98946753,98946754,50,-,CCGAACTTGGTTCCATAAAAACCAACACGAAAATAGGTGCCAAACATCCG,3' UTR,4,98936671,99120915,184245,2,Dock7-201,174161,Dock7-201;Dock7-217;Dock7-205;Dock7-204;Dock7-202;Dock7-214;Dock7-209;Dock7-213;Dock7-203;Dock7-215,Dock7;Dock7;Dock7;Dock7;Dock7;Dock7;Dock7;Dock7;Dock7;Dock7,0;0;0;0;0;0;-1500;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,9,67299,ENSMUSG00000028556,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17132,cg18631927,0.000111076,0.0000178,6.240550763,1.43E-09,gain,yes,-0.0000386,0.0000302,-1.274963625,0.203276849,neg,ns,0.029218096,0.008858748,3.298219664,0.001086192,pos,ns,2.964093495,-0.00118459,0.000304652,-3.888344163,0.000123505,neg,ns,0.41147608,Rufy3,Rufy3_Exon,5,88642903,88642952,88642951,88642952,50,-,CACAAGTTCATGTGGCTCACATCCAGATTGCGCCAGGCTGAGCGAAGCCG,"Exon (Rufy3-205/Rufy3, exon 13 of 18)",5,88565040,88651392,86353,1,Rufy3-205,77863,Rufy3-203;Rufy3-205;Rufy3-207;Rufy3-201;Rufy3-202;Rufy3-208,Rufy3;Rufy3;Rufy3;Rufy3;Rufy3;Rufy3,0;0;0;0;0;-3739,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,Exon,3,4,52822,ENSMUSG00000029291,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23376,cg21013680,-0.00000975,0.00000322,-3.026892965,0.002678049,loss,ns,-0.00000697,0.00000547,-1.27493528,0.203286869,neg,ns,-0.00527153,0.0016025,-3.289566098,0.001118973,neg,ns,2.95118026,0.000140317,0.0000551,2.546134078,0.011375956,pos,ns,0.933266765,Smg1,Smg1_threeUTR,7,118195888,118195937,118195936,118195937,50,-,ATGTAATGACCATGTCACAATGTATAGTCATGCTAGGATCCAAGCTGCCG,3' UTR,7,118131308,118243637,112330,2,Smg1-201,47700,Smg1-201;Smg1-204;Smg1-210;Smg1-209;Smg1-206;Smg1-203,Smg1;Smg1;Smg1;Smg1;Smg1;Smg1,0;0;-3597;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,7,9,233789,ENSMUSG00000030655,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7047,cg04500460,0.000137226,0.0000128,10.73085995,4.71E-23,gain,yes,-0.0000277,0.0000217,-1.274883538,0.203305161,neg,ns,0.017897088,0.006364717,2.811922194,0.005238536,pos,ns,2.280790099,-0.000528013,0.000218882,-2.412317006,0.016431962,neg,ns,0.433111443,Tfap2a,Tfap2a_Exon,13,40717193,40717242,40717241,40717242,50,+,CATTTTGTCCATGGCCTTGAGGGCCTCGGTGAGATAGTTCTGCAGGGCCG,"Exon (Tfap2a-201/Tfap2a, exon 7 of 7)",13,40715302,40730443,15142,2,Tfap2a-201,13201,Tfap2a-201;Tfap2a-202;Tfap2a-205;Tfap2a-203;Tfap2a-209;Tfap2a-208;Tfap2a-206;Tfap2a-204,Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,13,57,21418,ENSMUSG00000021359,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
14792,cg26991812,-0.0000112,0.00000795,-1.403649902,0.161424051,loss,ns,-0.0000172,0.0000135,-1.274752789,0.20335139,neg,ns,-0.003914065,0.003959267,-0.98858307,0.323638144,neg,ns,0.489940298,-0.000124612,0.000136159,-0.915198919,0.360798546,neg,ns,0.425547386,Nufip2,Nufip2_fiveUTR,11,77686133,77686182,77686181,77686182,50,+,GCGCTCAGATATACTGAGTGAGCCCTGAGAAGCAGTCTCAGATCCTGACG,Promoter (<=1kb),11,77686155,77712741,26587,1,Nufip2-201,0,Nufip2-201;Nufip2-204;Nufip2-202;Nufip2-203,Nufip2;Nufip2;Nufip2;Nufip2,0;0;-1277;-1419,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,10,68564,ENSMUSG00000037857,conserved gene and region,11,77685817,77686243,427,*,427,32,0.597189696,0.870096791,0.074941452,1.51E-20,CpGisland,TRUE,U1,Pr-A
5623,cg01030727,-0.0000214,0.0000122,-1.749502622,0.081193714,loss,ns,0.0000265,0.0000208,1.274648988,0.203388097,pos,ns,0.003670741,0.006079346,0.603805219,0.546414726,pos,ns,0.262477605,0.0000439,0.000209068,0.210043803,0.833771466,pos,ns,0.624691659,Kalrn,Kalrn_Exon,16,34360944,34360993,34360992,34360993,50,-,ATGAGGTCCCACTTGGAGCCCCGCATGTCGATGATGACAGTGAAGCCACG,"Exon (Kalrn-201/Kalrn, exon 4 of 60)",16,33975495,34456917,481423,2,Kalrn-201,95924,Kalrn-201;Kalrn-217;Kalrn-208;Kalrn-207;Kalrn-202;Kalrn-218;Kalrn-219,Kalrn;Kalrn;Kalrn;Kalrn;Kalrn;Kalrn;Kalrn,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,18,22,545156,ENSMUSG00000061751,conserved gene and region,16,34360903,34361014,112,*,112,9,0.598214286,0.908108108,0.080357143,0.00000238,CpGisland,TRUE,NA,NRS
17825,cg10766285,0.0000131,0.00000344,3.802976061,0.000172177,gain,ns,-0.00000745,0.00000585,-1.27443506,0.203463762,neg,ns,-0.00035481,0.001713179,-0.207106018,0.836063036,neg,ns,0.077760977,-0.0000849,0.0000589,-1.440847088,0.15063715,neg,ns,0.065402647,Irx3,Irx3_Exon,8,91872869,91872918,91872917,91872918,50,+,GGAGGTATTAATTGTTGTCAGCCTCCATTTCACACCCCAGATAACAAACG,"Exon (Gm28511-201/Gm28511-201, exon 2 of 2)",8,91798525,91802067,3543,2,Irx3-202,-70802,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,16,36,16373,ENSMUSG00000031734,mapped to different genes,8,91872703,91872933,231,*,231,16,0.632034632,0.698280748,0.069264069,5.08E-10,CpGisland,TRUE,NA,NRS
21248,cg18266306,-0.000001,0.00000531,-0.188513931,0.850597143,loss,ns,0.0000115,0.00000902,1.274431472,0.203465032,pos,ns,0.003070157,0.002643637,1.161338145,0.246397846,pos,ns,0.608363094,-0.000128825,0.0000909,-1.416996013,0.157488274,neg,ns,0.542865686,Kif2a,Kif2a_Exon,13,106982524,106982573,106982572,106982573,50,-,CTGTAAACCATTTCATTAGGAGCTGAGTCATCAAAGGCATAATCAAAACG,"Exon (Kif2a-201/Kif2a, exon 9 of 20)",13,106958996,107022118,63123,2,Kif2a-201,39545,Kif2a-201;Kif2a-204;Kif2a-206;Kif2a-202;Kif2a-203;Kif2a-205,Kif2a;Kif2a;Kif2a;Kif2a;Kif2a;Kif2a,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,5,16563,ENSMUSG00000021693,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3422,cg06639082,0.0000582,0.00000515,11.29140096,5.38E-25,gain,yes,-0.0000112,0.00000875,-1.274407188,0.203473622,neg,ns,0.001970088,0.002564278,0.76828172,0.442904687,pos,ns,0.353689724,0.0000596,0.0000882,0.67571771,0.499723639,pos,ns,0.084962488,A830031A19Rik,A830031A19Rik_Promoter,11,24074286,24074335,24074334,24074335,50,+,ACTTGTCAACACATTATAAAGCATAAACTAGGACTTGGCTATTAAGTACG,Promoter (<=1kb),11,24048955,24075054,26100,2,A830031A19Rik-201,719,A830031A19Rik-201;Bcl11a-201;Bcl11a-203;Bcl11a-205;Bcl11a-202,A830031A19Rik;Bcl11a;Bcl11a;Bcl11a;Bcl11a,0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,9,23,268391,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
10292,cg10856393,-0.00000439,0.00000167,-2.62478885,0.009099904,loss,ns,-0.00000362,0.00000284,-1.27429377,0.203513747,neg,ns,0.000533373,0.000832802,0.64045645,0.522349005,pos,ns,0.282039228,-0.0000291,0.0000286,-1.015609979,0.310607143,neg,ns,0.94786812,Arhgap5,Arhgap5_Exon,12,52567054,52567103,52567102,52567103,50,+,TTATCCATCTGTTTTTGGCCAACCTTGATGAGACCTGATTTTGAAAATCG,"Exon (Arhgap5-204/Arhgap5, exon 7 of 7)",12,52504016,52571975,67960,1,Arhgap5-204,63038,Arhgap5-204;Arhgap5-202;Arhgap5-201,Arhgap5;Arhgap5;Arhgap5,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,11855,ENSMUSG00000035133,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8608,cg02828449,0.0000962,0.0000172,5.578317328,0.000000053,gain,yes,-0.0000373,0.0000293,-1.274132771,0.203570715,neg,ns,0.034113944,0.008584478,3.973910241,0.000088,pos,ns,4.055520785,-0.000952694,0.000295219,-3.227069754,0.001384433,neg,ns,0.351263555,Btrc,Btrc_Intron,19,45440792,45440841,45440792,45440793,50,+,CGGAAGATTGCTTTTTCAATCCATTTGCTGGGTCACTGCTTTGAATGTCT,"Intron (Btrc-204/Btrc, intron 1 of 2)",19,45363734,45507736,144003,1,Btrc-204,77058,Btrc-204;Btrc-201;Btrc-210;Btrc-206;Btrc-202;Btrc-203;Btrc-208;Btrc-205;Btrc-209,Btrc;Btrc;Btrc;Btrc;Btrc;Btrc;Btrc;Btrc;Btrc,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,63,98,12234,ENSMUSG00000025217,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23091,cg23464955,-0.00000416,0.00000254,-1.633933418,0.103287944,loss,ns,-0.00000551,0.00000432,-1.274051508,0.203599474,neg,ns,-0.000807857,0.001266574,-0.637828417,0.524056218,neg,ns,0.280622122,-0.00000528,0.0000436,-0.121196133,0.903614206,neg,ns,0.897961454,Rnf220,Rnf220_Exon,4,117285903,117285952,117285951,117285952,50,+,AGGGGGCGGTTGCACAGGGGACATACCTGCCCTTCATCTTGCTTCCTCCG,"Exon (Rnf220-201/Rnf220, exon 7 of 15)",4,117271463,117497052,225590,2,Rnf220-201,211100,Rnf220-201;Rnf220-203;Rnf220-212;Rnf220-202;Rnf220-205;Rnf220-209;Rnf220-213;Rnf220-210;Rnf220-206;Rnf220-208,Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,15,152,66743,ENSMUSG00000028677,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13004,cg00197024,0.0000142,0.00000612,2.31374137,0.021335726,gain,ns,0.0000132,0.0000104,1.273914345,0.203648023,pos,ns,0.01359827,0.003044456,4.466567794,0.0000111,pos,ns,4.95273051,-0.000323704,0.000104699,-3.091773914,0.002170431,neg,ns,0.119398569,Erbb4,Erbb4_Intron,1,69105115,69105164,69105163,69105164,50,+,CAATTCACTCAACATCTTGTCGCCCTCTGGCAGCTTAGTTTACTTATCCG,"Intron (Erbb4-201/Erbb4, intron 1 of 27)",1,68032186,69107756,1075571,2,Erbb4-201,2592,Erbb4-201;Erbb4-202;Erbb4-205,Erbb4;Erbb4;Erbb4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,13,13869,ENSMUSG00000062209,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
17340,cg19800866,-0.00000137,0.00000148,-0.923118594,0.356663331,loss,ns,0.0000032,0.00000251,1.273765254,0.203700803,pos,ns,0.001462263,0.000736215,1.986188976,0.047892741,pos,ns,1.319730305,-0.0000248,0.0000253,-0.978551904,0.328564461,neg,ns,0.962056935,Ube2q1,Ube2q1_Exon,3,89779770,89779819,89779818,89779819,50,+,TCGGTGCAGGCCACTGACCGGCTGATGAAGGAGCTCAGGGATATATACCG,"Exon (Ube2q1-201/Ube2q1, exon 6 of 13)",3,89773616,89784000,10385,1,Ube2q1-201,6154,Ube2q1-201;Ube2q1-203;Ube2q1-202,Ube2q1;Ube2q1;Ube2q1,0;5910;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,6,70093,ENSMUSG00000042572,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19226,cg27181123,-0.0000563,0.0000126,-4.484157365,0.0000103,loss,ns,-0.0000272,0.0000213,-1.273443181,0.203814854,neg,ns,-0.012732468,0.006251777,-2.036615895,0.04253802,neg,ns,1.371222731,0.00000514,0.000214998,0.023887123,0.980958014,pos,ns,0.683392058,Msl1,Msl1_Exon,11,98800142,98800191,98800142,98800143,50,+,CGTGAATTGAGGAGCCAAGAAACCCCAGAAAAGCCCCGGTCTTCAGTGGA,Promoter (<=1kb),11,98800165,98804119,3955,1,Msl1-205,0,Casc3-201;Msl1-201;Msl1-203;Msl1-204;Msl1-202;Msl1-205;Msl1-206,Casc3;Msl1;Msl1;Msl1;Msl1;Msl1;Msl1,-4714;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,13,74026,ENSMUSG00000052915,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10025,cg09606431,0.0000301,0.00000542,5.5464934,6.25E-08,gain,yes,-0.0000117,0.00000921,-1.273289171,0.203869409,neg,ns,0.017057276,0.002697588,6.323157854,8.93E-10,pos,ns,9.049282897,-0.00029243,0.0000928,-3.15220867,0.001778872,neg,ns,0.91143381,Skap2,Skap2_Intron,6,51961102,51961151,51961102,51961103,50,+,CGTTGTGCCAAAGGGGAATAAGTATATGGTTGCTCTGTGACCAAATGTCA,"Intron (Skap2-205/Skap2, intron 4 of 12)",6,51857422,52012549,155128,2,Skap2-205,51398,Skap2-205;Skap2-201,Skap2;Skap2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,19,54353,ENSMUSG00000059182,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15872,cg12394655,0.00000633,0.00000175,3.622815295,0.000340394,gain,ns,0.00000378,0.00000297,1.273139954,0.203922275,pos,ns,0.002295993,0.000869716,2.639932128,0.008711825,pos,ns,2.059890856,0.0000306,0.0000299,1.024298543,0.30649291,pos,ns,0.042382401,Gm6411,Gm6411_Exon,13,83738811,83738860,83738811,83738812,50,-,CGAGTTGTTATCTTTGGTTATCTAGCTGTATGAGTGTATTGGTCTTCATA,"Exon (C130071C03Rik-201/C130071C03Rik-201, exon 4 of 4)",13,83761132,83762335,1204,2,Gm6411-201,23524,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,36,623241,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
23545,cg20504024,0.0000158,0.00000371,4.251855504,0.0000281,gain,ns,0.00000802,0.0000063,1.272997144,0.203972881,pos,ns,0.003544176,0.001845402,1.920543962,0.055706387,pos,ns,1.254095006,-0.00000107,0.0000635,-0.016786616,0.986617646,neg,ns,0.069856744,Sp8,Sp8_Promoter,12,118841020,118841069,118841020,118841021,50,-,CGGCTTAAATGGGGACATCTGTTCAGTGCTGCTCATCTTACTCTTAGAGC,Promoter (5-6kb),12,118846329,118852576,6248,1,Sp8-201,-5309,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,27,29,320145,ENSMUSG00000048562,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
1583,cg01727767,-0.00000455,0.00000141,-3.224014031,0.001398801,loss,ns,-0.00000305,0.0000024,-1.272860537,0.204021297,neg,ns,-0.000869636,0.000701876,-1.239016987,0.216276487,neg,ns,0.664990694,0.00000638,0.0000241,0.264169138,0.791825124,pos,ns,0.963513861,Zfp521,Zfp521_Intron,18,13797117,13797166,13797165,13797166,50,-,TCTCATTTTTCCTAAAATACTTACCACATTAACATGACCAAGGTCCAGCG,"Intron (Zfp521-201/Zfp521, intron 5 of 7)",18,13687013,13972787,285775,2,Zfp521-201,175621,Zfp521-201;Zfp521-205;Zfp521-204,Zfp521;Zfp521;Zfp521,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,81,225207,ENSMUSG00000024420,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2808,cg19150413,-0.00000528,0.00000187,-2.820613912,0.0051022,loss,ns,-0.00000405,0.00000318,-1.272805908,0.204040661,neg,ns,-0.001765569,0.00093184,-1.894712082,0.059060956,neg,ns,1.228699526,0.0000283,0.000032,0.881867216,0.378531876,pos,ns,0.944949079,Pnisr,Pnisr_threeUTR,4,21871527,21871576,21871527,21871528,50,-,CGGCATCGAATCCGGCAAAAACAGGAAGCTTTTTGGAGAAAAGAAAAAGA,3' UTR,4,21847583,21876475,28893,1,Pnisr-201,23944,Pnisr-201;Pnisr-213;Pnisr-202;Pnisr-203;Pnisr-207;Pnisr-204,Pnisr;Pnisr;Pnisr;Pnisr;Pnisr;Pnisr,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,threeUTR,3,10,66625,ENSMUSG00000028248,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21161,cg19153596,-0.00000878,0.00000537,-1.63396828,0.103280619,loss,ns,-0.0000116,0.00000913,-1.272530793,0.204138201,neg,ns,0.00669606,0.002673636,2.504476617,0.012776484,pos,ns,1.893588662,-0.000374421,0.0000919,-4.072174922,0.0000592,neg,ns,0.893428818,Mpped2,Mpped2_Exon,2,106575304,106575353,106575352,106575353,50,-,ACTAAAACAAACGGCTCATTCTAGCTGAAGAGACACTCATATATATCACG,"Exon (Gm14014-201/Gm14014-201, exon 2 of 2)",2,106693269,106868356,175088,1,Mpped2-202,-117965,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,16,33,77015,ENSMUSG00000016386,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27241,cg26651528,-0.0000207,0.0000187,-1.108269978,0.268604341,loss,ns,0.0000405,0.0000318,1.272524042,0.204140594,pos,ns,0.00322522,0.009317166,0.346158937,0.72945809,pos,ns,0.136999655,0.000159341,0.000320417,0.497294339,0.619334025,pos,ns,0.681534859,Nhs,Nhs_threeUTR,X,161833429,161833478,161833477,161833478,50,-,AAGTGTTGCACAGCTCTAAAATATACAAAGGCTTGGATTGAATGTAAACG,3' UTR,20,161833296,162159730,326435,2,Nhs-202,326252,Nhs-202;Nhs-201;Scml1-201,Nhs;Nhs;Scml1,0;0;-1253,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,12,195727,ENSMUSG00000059493,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11450,cg09625554,0.0000429,0.00000533,8.050063164,1.79E-14,gain,yes,0.0000115,0.00000906,1.272495781,0.204150616,pos,ns,0.007180089,0.002655225,2.70413545,0.007226406,pos,ns,2.141077658,-0.0000187,0.0000913,-0.204268935,0.838277384,neg,ns,0.158249747,Loxl1,Loxl1_Exon,9,58312720,58312769,58312768,58312769,50,+,TTGAGCAAGCTGTACACCTGCCCGTTGTTCTCCCACTGGATCAGCTGCCG,Promoter (<=1kb),9,58287738,58313186,25449,2,Loxl1-201,417,Loxl1-201,Loxl1,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,16949,ENSMUSG00000032334,mapped to different genes,9,58312137,58312827,691,*,691,75,0.693198263,0.903504184,0.10853835,6.28E-60,CpGisland,TRUE,U3,Pr-B
8447,cg06537212,0.000000166,0.00000344,0.048157258,0.961621924,gain,ns,0.00000745,0.00000585,1.272489715,0.204152767,pos,ns,0.001923841,0.001714175,1.122313152,0.262597823,pos,ns,0.580708879,-0.0000846,0.000059,-1.435586641,0.152128222,neg,ns,0.93853869,Gm4766,Gm4766_Exon,17,45151472,45151521,45151520,45151521,50,+,TTGCATATTGGATTAGGGCCTGGCATGCATTCATCAACTTTATAGTAGCG,"Exon (Gm35097-201/Gm35097-201, exon 1 of 1)",17,45163230,45164168,939,2,Gm4766-201,12647,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,210562,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22358,cg17693227,-0.0000162,0.00000573,-2.822462591,0.005073622,loss,ns,-0.0000124,0.00000973,-1.272438368,0.204170976,neg,ns,-0.000195925,0.002849555,-0.068756188,0.94522802,neg,ns,0.024463413,-0.000091,0.000098,-0.92857453,0.353832073,neg,ns,0.919286586,Far1,Far1_Exon,7,113553631,113553680,113553679,113553680,50,-,TTCTTCTTCAGAGTACCATGTAATTTCCACTTTCAAGAGGAATCCTCTCG,"Exon (Far1-201/Far1, exon 10 of 13)",7,113513834,113571511,57678,1,Far1-201,39797,Far1-201;Far1-205;Far1-202;Far1-211;Far1-207;Far1-204,Far1;Far1;Far1;Far1;Far1;Far1,0;39770;0;0;39754;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,67420,ENSMUSG00000030759,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8926,cg08368952,0.0000377,0.00000703,5.36187881,0.000000161,gain,yes,0.0000152,0.0000119,1.27243548,0.204172,pos,ns,-0.000367441,0.003496481,-0.105088762,0.916373339,neg,ns,0.037927555,0.000283753,0.000120244,2.359816807,0.018903429,pos,ns,0.672407877,Psd,Psd_Exon,19,46320887,46320936,46320935,46320936,50,-,TGCTTCCCAGGGCCAGCCGCTCTGTGCTGTCCAGCTCTGAGTCTGAGTCG,"Exon (Psd-201/Psd, exon 7 of 18)",19,46312087,46327156,15070,2,Psd-201,6220,Psd-211;Psd-208;Psd-201;Psd-202;Psd-210;Psd-205;Psd-212;Psd-207;Psd-213;Psd-203;Psd-204;Psd-206,Psd;Psd;Psd;Psd;Psd;Psd;Psd;Psd;Psd;Psd;Psd;Psd,0;0;0;0;0;4650;3123;0;5570;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,6,73728,ENSMUSG00000037126,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
26182,cg12259566,-0.000003,0.00000172,-1.747056671,0.081617797,loss,ns,-0.00000371,0.00000292,-1.272387865,0.204188887,neg,ns,-0.001456916,0.000854491,-1.705011398,0.089194115,neg,ns,1.049663799,0.00000468,0.0000294,0.15919652,0.873617712,pos,ns,0.965613164,Sox5,Sox5_Intron,6,144251953,144252002,144252001,144252002,50,-,TCTTAAATAAAAATGACTCAAATACAGGCCACATAATGATCTCCATTGCG,"Intron (Sox5-209/Sox5, intron 4 of 13)",6,143843739,144781977,938239,2,Sox5-209,529975,Sox5-209;Sox5-212,Sox5;Sox5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,71,20678,ENSMUSG00000041540,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3060,cg08669543,-0.00000732,0.00000337,-2.17219863,0.030598281,loss,ns,0.00000729,0.00000573,1.272357281,0.204199735,pos,ns,0.001379756,0.001677861,0.822330644,0.411520796,pos,ns,0.385608213,0.0000359,0.0000577,0.621783712,0.534541098,pos,ns,0.938051573,Lrmda,Lrmda_Intron,14,22492186,22492235,22492186,22492187,50,+,CGTGTTGTATTTTTTCTGAATGACAATGAAAGTAATTGAAAATATTGATT,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,472474,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206;Lrmda-202,Lrmda;Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2040,cg19292353,-0.0000171,0.00000636,-2.685202491,0.007638735,loss,ns,-0.0000137,0.0000108,-1.272297027,0.204221106,neg,ns,0.00377922,0.00316327,1.194719284,0.233109985,pos,ns,0.632439124,-0.000171223,0.000108785,-1.573959658,0.116516766,neg,ns,0.930130277,Pcsk5,Pcsk5_Exon,19,17617703,17617752,17617751,17617752,50,+,ACGGGAAGTCCTGACAATAACATGCTGTACGTCTCTCCAGGTCAGAAACG,"Exon (Pcsk5-201/Pcsk5, exon 10 of 38)",19,17432319,17837632,405314,2,Pcsk5-201,219880,Pcsk5-201;Pcsk5-202;Pcsk5-204,Pcsk5;Pcsk5;Pcsk5,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,7,18552,ENSMUSG00000024713,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17049,cg23331714,-0.0000147,0.00000974,-1.504966859,0.133350768,loss,ns,0.000021,0.0000165,1.272243315,0.204240159,pos,ns,0.00448603,0.004846282,0.925664178,0.355340566,pos,ns,0.44935521,0.00016298,0.000166663,0.977898047,0.328887259,pos,ns,0.601951418,Il1rapl1,Il1rapl1_fiveUTR,X,88115189,88115238,88115237,88115238,50,+,ATACAGATCTTCCCTACAAGACTGTCTCCAGTTAGTTCTCAAAGTGCCCG,Promoter (<=1kb),20,86740870,88115645,1374776,2,Il1rapl1-203,407,Il1rapl1-203;Il1rapl1-202,Il1rapl1;Il1rapl1,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,18,331461,ENSMUSG00000052372,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18269,cg16792343,-0.000000831,0.00000238,-0.349723195,0.726783911,loss,ns,0.00000514,0.00000404,1.271991718,0.204329422,pos,ns,0.002343741,0.001182767,1.98157522,0.048409919,pos,ns,1.31506564,-0.0000316,0.0000407,-0.776957275,0.437776434,neg,ns,0.931663353,Dyrk1a,Dyrk1a_fiveUTR,16,94659568,94659617,94659616,94659617,50,+,CTTCAGATGGCTGGACAGATGCCCCATTCACATCAGTACAGTGACCGTCG,5' UTR,16,94570010,94695067,125058,1,Dyrk1a-202,89558,Dyrk1a-202;Dyrk1a-203;Dyrk1a-205;Dyrk1a-206;Dyrk1a-201,Dyrk1a;Dyrk1a;Dyrk1a;Dyrk1a;Dyrk1a,0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,14,13548,ENSMUSG00000022897,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3774,cg06610378,-0.0000125,0.00000607,-2.060424833,0.040192114,loss,ns,0.0000131,0.0000103,1.271986725,0.204331194,pos,ns,-0.001129357,0.003021069,-0.373826761,0.708788746,neg,ns,0.149483187,0.0000402,0.000103894,0.386972885,0.699041795,pos,ns,0.855771155,5730522E02Rik,5730522E02Rik_Intron,11,25330951,25331000,25330951,25330952,50,+,CGGCCTTGGCATTTACTTAACCTTTTGTCTCATGTATGAGACTGAGTCAG,"Intron (4933427E13Rik-204/4933427E13Rik-204, intron 1 of 1)",11,25602816,25620098,17283,2,5730522E02Rik-205,289098,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,90,70626,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1652,cg21494159,-0.0000212,0.00000737,-2.883808872,0.004203932,loss,ns,-0.0000159,0.0000125,-1.271926527,0.204352556,neg,ns,-0.000876884,0.003666299,-0.239174066,0.811128659,neg,ns,0.090910254,-0.000186096,0.000126084,-1.475968772,0.140967279,neg,ns,0.945501128,Zfp521,Zfp521_Intergenic_upstream,18,14021831,14021880,14021831,14021832,50,+,CGCCATGGAGACATGAAGTCTAGATTTAATAAAATCATGCAGTGTGAAGT,Distal Intergenic,18,13687013,13972787,285775,2,Zfp521-201,-49044,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,81,225207,ENSMUSG00000024420,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19643,cg27115779,0.0000225,0.0000133,1.685793518,0.09284177,gain,ns,-0.0000288,0.0000227,-1.271623326,0.204460174,neg,ns,0.014608671,0.006638879,2.200472649,0.028510659,pos,ns,1.544992744,-0.000504699,0.00022831,-2.210581291,0.027794795,neg,ns,0.690478951,Gm28267,Gm28267_Intergenic_upstream,9,100266910,100266959,100266958,100266959,50,-,GAAAAACATACGTGGGCTTTACAGCTCCAAGACAGCTTGCACAGGCCCCG,Distal Intergenic,9,100404495,100404759,265,1,Gm28267-201,-137585,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,29,29,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25236,cg19969294,-0.000013,0.00000326,-3.970988799,0.000089,loss,ns,0.00000705,0.00000554,1.271401978,0.204538766,pos,ns,-0.00102135,0.001624351,-0.628774487,0.529959726,neg,ns,0.275757133,-0.0000686,0.0000559,-1.228427084,0.22021847,neg,ns,0.935856869,Castor2,Castor2_Intergenic_upstream,5,134020015,134020064,134020015,134020016,50,-,CGGCCTGGAAATAAATGTCCAAAATGATATGAAAATGTACTAGGAAGAGA,Distal Intergenic,5,134099711,134144343,44633,1,Castor2-201,-79696,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,80909,ENSMUSG00000015944,mapped to different genes,5,134019914,134020016,103,*,103,9,0.475728155,1.560606061,0.087378641,0.00000118,CpGisland,TRUE,U15,NS
4217,cg13978325,-0.00000435,0.00000223,-1.948437364,0.052264716,loss,ns,0.00000482,0.00000379,1.271383632,0.204545281,pos,ns,0.000710351,0.001110612,0.639603707,0.522902646,pos,ns,0.281579161,-0.00000431,0.0000382,-0.112969029,0.910128229,neg,ns,0.087248529,Rxra,Rxra_fiveUTR,2,27677243,27677292,27677243,27677244,50,-,CGCAGACACAAGTAGTTTACATTGTTGGGCGACTTTTGCAACAACTCGCC,Promoter (<=1kb),2,27677262,27761417,84156,1,Rxra-206,0,Rxra-204;Rxra-201;Rxra-206,Rxra;Rxra;Rxra,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,6,20181,ENSMUSG00000015846,conserved gene but different region,2,27676993,27678034,1042,*,1042,159,0.777351248,1.01724699,0.152591171,7.74E-154,CpGisland,TRUE,NA,NRS
25029,cg01266390,0.000000447,0.00000235,0.190155389,0.849311825,gain,ns,-0.00000508,0.000004,-1.271338987,0.204561136,neg,ns,0.000549308,0.001170982,0.46910078,0.639327339,pos,ns,0.194276724,-0.0000543,0.0000403,-1.34943011,0.17818353,neg,ns,0.038427747,Fgfr2,Fgfr2_Intron,7,131644235,131644284,131644283,131644284,50,+,CAATAAGACGGAATGGATGGCCACACTTGGTTGTAATCAGTGGGCTCTCG,"Intron (Fgfr2-217/Fgfr2, intron 2 of 6)",7,130162451,133123350,2960900,2,Fgfr2-217,1479066,Fgfr2-217,Fgfr2,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,58,79,14183,ENSMUSG00000030849,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
13637,cg02420467,-0.0000266,0.0000102,-2.599232192,0.009790132,loss,ns,0.0000221,0.0000174,1.271305234,0.204573123,pos,ns,-0.008900643,0.005099317,-1.745458113,0.081895933,neg,ns,1.086737665,-0.0000194,0.000175365,-0.110552137,0.912043041,neg,ns,0.713282504,Gm48818,Gm48818_Exon,11,71573310,71573359,71573358,71573359,50,-,TTCTATAAATACTTAACAACTTGTCAGGGGAGATTACAAATATTGGCACG,"Exon (Gm33351-202/Gm33351-202, exon 1 of 6)",11,71696271,71697516,1246,2,Gm48818-201,124206,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,5,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22612,cg15572610,-0.0000045,0.0000131,-0.343913911,0.731144183,loss,ns,0.0000283,0.0000222,1.271112037,0.204641746,pos,ns,0.006318467,0.006513343,0.97008041,0.332762676,pos,ns,0.477865391,-0.00000543,0.000223993,-0.024236533,0.980679531,neg,ns,0.212010217,Msi1,Msi1_Exon,5,115430809,115430858,115430857,115430858,50,+,TCGGCTTCGTCACTTTCATGGACCAGGCGGGGGTGGATAAAGTGCTGGCG,"Exon (Msi1-208/Msi1, exon 4 of 15)",5,115429599,115455698,26100,1,Msi1-208,1210,Msi1-208;Msi1-209;Msi1-201;Msi1-203;Msi1-206;Msi1-205;Msi1-207;Msi1-204;Msi1-202,Msi1;Msi1;Msi1;Msi1;Msi1;Msi1;Msi1;Msi1;Msi1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,14,17690,ENSMUSG00000054256,conserved gene and region,5,115429256,115430967,1712,*,1712,200,0.754672897,0.820764577,0.11682243,8.17E-166,CpGisland,TRUE,U3,Pr-B
26624,cg10425556,-0.000000493,0.00000228,-0.216058727,0.829084068,loss,ns,0.00000492,0.00000387,1.270855114,0.20473303,pos,ns,0.00103174,0.001135103,0.90893927,0.364088285,pos,ns,0.438793295,0.0000197,0.000039,0.505320204,0.613693028,pos,ns,0.967250095,Pex14,Pex14_Intron,4,149040261,149040310,149040309,149040310,50,-,AGCTCCTGATACTAAAACTGCTCAGCAAAGCCTGCGGTGGGGAAGTGCCG,"Intron (Pex14-201/Pex14, intron 3 of 8)",4,148960535,149099876,139342,2,Pex14-201,59566,Pex14-201;Pex14-202;Pex14-205;Pex14-203;Pex14-204,Pex14;Pex14;Pex14;Pex14;Pex14,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,41,48,56273,ENSMUSG00000028975,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24465,cg07848252,0.0000258,0.00000383,6.737756497,7.84E-11,gain,yes,-0.00000828,0.00000652,-1.270533298,0.204847412,neg,ns,0.0000676,0.001908697,0.035436552,0.971754446,pos,ns,0.012443464,-0.00000836,0.0000656,-0.127428998,0.898683485,neg,ns,0.916183526,Ago1,Ago1_threeUTR,4,126443081,126443130,126443081,126443082,50,-,CGCTGGTGTGGGACTAGGATGTTGTTAATGCCACCAAGTTTGACATTGAT,3' UTR,4,126435012,126468421,33410,2,Ago1-207,25291,Ago1-207;Ago1-201;Ago1-206;Ago1-202;Ago1-205;Ago1-204,Ago1;Ago1;Ago1;Ago1;Ago1;Ago1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,11,13,236511,ENSMUSG00000041530,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24511,cg10428279,0.00000797,0.00000218,3.648972562,0.000308833,gain,ns,-0.00000472,0.00000371,-1.270507044,0.204856746,neg,ns,0.000433426,0.001087318,0.398619437,0.690448059,pos,ns,0.160868987,0.0000249,0.0000374,0.666285643,0.505724071,pos,ns,0.04939521,Gabpb1,Gabpb1_fiveUTR,2,126675320,126675369,126675368,126675369,50,-,CGGTGGTAACAGGGCCCTACACAGACCCGCACTGACCTGGAAAAGCTTCG,Promoter (<=1kb),2,126652326,126675339,23014,2,Gabpb1-208,0,Gabpb1-206;Gabpb1-205;Gabpb1-204;Gabpb1-201;Gabpb1-203;Gabpb1-202;Gabpb1-208;Gabpb1-207,Gabpb1;Gabpb1;Gabpb1;Gabpb1;Gabpb1;Gabpb1;Gabpb1;Gabpb1,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,7,12,14391,ENSMUSG00000027361,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
17461,cg04899689,-0.00000509,0.00000468,-1.086682048,0.278021579,loss,ns,-0.0000101,0.00000795,-1.270440048,0.204880565,neg,ns,-0.003333784,0.002329771,-1.430949457,0.153451971,neg,ns,0.81402753,-0.000102145,0.0000801,-1.27488816,0.203303527,neg,ns,0.894424807,Nrxn3,Nrxn3_threeUTR,12,90332143,90332192,90332191,90332192,50,+,GGGGGCCTCAGAGGTGATCCGGGAGTCGAGCAGCACAACAGGGATGGTCG,3' UTR,12,88722986,90332878,1609893,1,Nrxn3-213,1609157,Nrxn3-213;Nrxn3-208;Nrxn3-205;Nrxn3-201;Nrxn3-210;Nrxn3-214;Nrxn3-203;Nrxn3-202,Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,14,39,18191,ENSMUSG00000066392,conserved gene and region,12,90332093,90332366,274,*,274,16,0.591240876,0.669108669,0.058394161,6.19E-09,CpGisland,TRUE,NA,NRS
8162,cg00902275,0.0000741,0.00000934,7.941067061,3.72E-14,gain,yes,-0.0000201,0.0000159,-1.270165042,0.204978358,neg,ns,-0.002286952,0.00464654,-0.492183854,0.622937743,neg,ns,0.205555355,0.00041366,0.000159794,2.588703028,0.010087881,pos,ns,0.782013953,Pax2,Pax2_Intron,19,44813540,44813589,44813540,44813541,50,-,CGCACAATGAGTTGAGGCATGATGTTCATTTCAAGTTCATTTCGCCGGCC,"Intron (Pax2-203/Pax2, intron 5 of 9)",19,44756045,44837851,81807,1,Pax2-203,57495,Pax2-203;Pax2-201;Pax2-202,Pax2;Pax2;Pax2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,35,166,18504,ENSMUSG00000004231,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21472,cg24425695,0.00000168,0.00000427,0.393828544,0.693978378,gain,ns,-0.00000921,0.00000725,-1.269960804,0.205051008,neg,ns,-0.002512649,0.002124617,-1.182636108,0.237859644,neg,ns,0.623679235,-0.0000623,0.0000731,-0.852959239,0.394340446,neg,ns,0.854460307,Actl11,Actl11_Promoter,9,107927991,107928040,107928039,107928040,50,-,GAACCATCTGGAGCAGCAGAGACTGCCAAGGAGCTGCTGTCCCTGGAGCG,Promoter (<=1kb),9,107928469,107932461,3993,1,Actl11-201,-478,Actl11-201,Actl11,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,2,67722,ENSMUSG00000066368,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1824,cg12945499,0.00000198,0.00000148,1.337636903,0.181995339,gain,ns,0.00000319,0.00000251,1.269814289,0.205103137,pos,ns,0.00177867,0.000735189,2.419338432,0.016124046,pos,ns,1.792525964,-0.0000731,0.0000253,-2.892851838,0.004087907,neg,ns,0.959505511,Foxp2,Foxp2_threeUTR,6,15411275,15411324,15411323,15411324,50,+,CTTAATGAAATTTACAGCTGGTTTACACGGACATTTGCTTACTTCAGGCG,3' UTR,6,14901349,15441977,540629,1,Foxp2-207,509926,Foxp2-207;Foxp2-213;Foxp2-205;Foxp2-204;Foxp2-201;Foxp2-206,Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,10,65,114142,ENSMUSG00000029563,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2732,cg17509850,0.00000693,0.0000045,1.538869731,0.12485617,gain,ns,0.00000971,0.00000765,1.269813899,0.205103276,pos,ns,0.004719365,0.00224139,2.105552744,0.036047322,pos,ns,1.443127,-0.000083,0.0000771,-1.076485655,0.282547146,neg,ns,0.033011614,Klhl14,Klhl14_Exon,18,21651618,21651667,21651618,21651619,50,-,CGTGCTCCAGCCACAGCACGGACATCTGGAAGAGCGCCAGCTCCGACTCC,Promoter (<=1kb),18,21550377,21652368,101992,2,Klhl14-201,701,Klhl14-201;Klhl14-202,Klhl14;Klhl14,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,14,38,225266,ENSMUSG00000042514,conserved gene and region,18,21651474,21651709,236,*,236,24,0.669491525,0.908128908,0.101694915,8.84E-19,CpGisland,TRUE,U3,Pr-B
20901,cg05303018,0.000105079,0.00000795,13.21943371,6.03E-32,gain,yes,-0.0000171,0.0000135,-1.269804411,0.205106652,neg,ns,0.005882016,0.003956214,1.486779162,0.138089497,pos,ns,0.859839351,0.0000663,0.000136054,0.48735724,0.62634964,pos,ns,0.352997438,Pax6,Pax6_Exon,2,105685802,105685851,105685802,105685803,50,-,CGCAACCTGGCTAGCGAAAAGCAACAGATGGGCGCAGACGGCATGTATGA,"Exon (Pax6-206/Pax6, exon 7 of 13)",2,105668900,105697364,28465,1,Pax6-206,16902,Pax6-206;Pax6-207;Pax6-210;Pax6-214;Pax6-208;Pax6-202;Pax6-205;Pax6-225;Pax6-204;Pax6-201;Pax6-203;Pax6-224;Pax6-219;Pax6-221;Pax6-213;Pax6-211;Pax6-222;Pax6-212;Pax6-215;Pax6-223;Pax6-209;Pax6-216,Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,Exon,31,78,18508,ENSMUSG00000027168,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
2145,cg05959258,-4.20E-09,0.00000152,-0.002758942,0.99780046,loss,ns,-0.00000328,0.00000258,-1.269797761,0.205109018,neg,ns,-0.00069872,0.000757222,-0.922741457,0.356859568,neg,ns,0.447502655,0.000026,0.000026,0.9988393,0.31865156,pos,ns,0.969044289,Cyp7b1,Cyp7b1_Intron,3,18082039,18082088,18082087,18082088,50,+,GTTCACATGCCTTCAAGCATTTGTCTTCCAATTTCCACTGAATAAATGCG,"Intron (Cyp7b1-201/Cyp7b1, intron 4 of 5)",3,18071950,18243338,171389,2,Cyp7b1-201,161250,Cyp7b1-201,Cyp7b1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,17,13123,ENSMUSG00000039519,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24418,cg20246778,-0.00000279,0.00000233,-1.198671688,0.231571142,loss,ns,0.00000502,0.00000395,1.269717239,0.205137672,pos,ns,0.000203341,0.001157665,0.17564761,0.860685474,pos,ns,0.065155527,-0.0000758,0.0000398,-1.903810146,0.057860736,neg,ns,0.94337053,Ndst4,Ndst4_Exon,3,125561450,125561499,125561450,125561451,50,-,CGCACTCAGGTTGCAAATTTTACCTTCAACCTTGGATTTTCAGGGAAGTT,"Exon (Ndst4-204/Ndst4, exon 3 of 14)",3,125404076,125728899,324824,1,Ndst4-204,157374,Ndst4-204;Ndst4-202;Ndst4-201,Ndst4;Ndst4;Ndst4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,64580,ENSMUSG00000027971,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8710,cg11178562,-0.00000186,0.0000014,-1.328268586,0.185066438,loss,ns,0.00000303,0.00000238,1.26961894,0.205172656,pos,ns,0.001639242,0.000698412,2.347099855,0.019549129,pos,ns,1.708872596,-0.0000576,0.000024,-2.399313123,0.017015961,neg,ns,0.968899684,Atxn1,Atxn1_fiveUTR,13,45568374,45568423,45568422,45568423,50,-,TTGGGAGGCAGGCATTCGTTGCTCCGCTCTTGGTTGGATTTCATTTTTCG,5' UTR,13,45549755,45964976,415222,2,Atxn1-201,396553,Atxn1-201;Atxn1-202;Atxn1-203,Atxn1;Atxn1;Atxn1,0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,10,20238,ENSMUSG00000046876,conserved gene and region,13,45568219,45568462,244,*,244,17,0.668032787,0.62451069,0.069672131,1.17E-10,CpGisland,TRUE,U11,Tr-P
4840,cg03653835,0.0000218,0.00000398,5.490832796,8.34E-08,gain,yes,-0.00000858,0.00000676,-1.26947447,0.205224079,neg,ns,-0.00376819,0.001980003,-1.903122927,0.057950678,neg,ns,1.23694148,0.000236625,0.0000681,3.475073836,0.00058352,pos,ns,0.118692524,Adamts8,Adamts8_Promoter,9,30942459,30942508,30942459,30942460,50,-,CGGGAATAGTGAGAGATCAAAAATAAACCTCTTATGTCAAGCCGGGAAGG,Promoter (<=1kb),9,30942562,30962856,20295,1,Adamts8-201,-103,Adamts8-201;Adamts8-202,Adamts8;Adamts8,-54;-950,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,1,30806,ENSMUSG00000031994,conserved gene and region,9,30942459,30943344,886,*,886,106,0.707674944,0.955596256,0.119638826,1.81E-89,CpGisland,TRUE,U3,Pr-B
7085,cg09408655,-0.000123037,0.0000296,-4.151540262,0.0000427,loss,ns,0.0000639,0.0000503,1.269448784,0.205233223,pos,ns,0.002067922,0.014750379,0.140194487,0.888597373,pos,ns,0.051294975,0.000111052,0.000507264,0.218923054,0.826854051,pos,ns,0.45823031,Bsx,Bsx_Intergenic_upstream,9,40858810,40858859,40858810,40858811,50,+,CGATGTTTTCATTTAAGTGTTTAAGTGGAAGGTTTTATTCCTAATGTAGT,Distal Intergenic,9,40874127,40880057,5931,1,Bsx-201,-15268,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,3,244813,ENSMUSG00000054360,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5907,cg12153275,-0.00000104,0.00000163,-0.641001695,0.521995165,loss,ns,0.00000352,0.00000277,1.269314628,0.205280985,pos,ns,0.001146998,0.000811372,1.413651346,0.15846769,pos,ns,0.800059273,-0.0000106,0.0000279,-0.381291686,0.703248014,neg,ns,0.967967279,Ctnna1,Ctnna1_Exon,18,35214101,35214150,35214149,35214150,50,-,AGAGTCGCAGTAGAAGAGCAGCTTCTCGCAGCGGCATTTGGGTGGACACG,"Exon (Lrrtm2-201/Lrrtm2, exon 2 of 2)",18,35118859,35254779,135921,1,Ctnna1-201,95242,Ctnna1-201;Ctnna1-204;Ctnna1-210;Ctnna1-203;Ctnna1-202;Lrrtm2-201;Lrrtm2-202;Lrrtm2-203,Ctnna1;Ctnna1;Ctnna1;Ctnna1;Ctnna1;Lrrtm2;Lrrtm2;Lrrtm2,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,13,12385,ENSMUSG00000037815,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3015,cg06457237,-0.00000181,0.00000301,-0.602885191,0.547025859,loss,ns,0.00000649,0.00000511,1.269157736,0.205336852,pos,ns,0.002819197,0.001497223,1.882949965,0.060643328,pos,ns,1.217216976,-0.000139848,0.0000515,-2.716047053,0.006977387,neg,ns,0.938290726,Asxl3,Asxl3_fiveUTR,18,22392611,22392660,22392659,22392660,50,+,TTACTATATATACACATATATAATATTTTCCAGTCTGGTTTCAGACCCCG,5' UTR,18,22344246,22530015,185770,1,Asxl3-204,48365,Asxl3-204;Asxl3-202;Asxl3-201,Asxl3;Asxl3;Asxl3,0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,5,211961,ENSMUSG00000045215,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2767,cg15385409,0.000100344,0.00000919,10.91848469,1.07E-23,gain,yes,-0.0000198,0.0000156,-1.269144419,0.205341595,neg,ns,0.00772472,0.004574118,1.68878913,0.092265396,pos,ns,1.034961148,-0.0000567,0.000157304,-0.360347208,0.718832897,neg,ns,0.108035043,Prdm13,Prdm13_Promoter,4,21687965,21688014,21687965,21687966,50,-,CGCGAACAATTTTATCAATAGGACCATGTAAAGGCCGACTGTGAGGAAAG,Promoter (2-3kb),4,21677480,21685963,8484,2,Prdm13-205,-2051,Prdm13-205;Prdm13-201;Prdm13-202;Prdm13-203;Prdm13-206;Prdm13-204,Prdm13;Prdm13;Prdm13;Prdm13;Prdm13;Prdm13,0;0;0;0;0;-2120,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,19,23,230025,ENSMUSG00000040478,conserved gene and region,4,21687850,21688001,152,*,152,12,0.546052632,1.062937063,0.078947368,2.89E-08,CpGisland,TRUE,U13,Hc-P
25741,cg17748758,0.0000158,0.00000272,5.808259777,1.56E-08,gain,yes,-0.00000586,0.00000462,-1.269117665,0.205351123,neg,ns,0.000715397,0.001353812,0.528431796,0.597577768,pos,ns,0.223605568,0.00000355,0.0000466,0.076310511,0.939221288,pos,ns,0.94841443,Dennd1b,Dennd1b_Intron,1,139011296,139011345,139011296,139011297,50,+,CGATTACCATGATCACCCACAGCTTCAGAGGAGTGCGAAGAAAAGAAATT,"Intron (Dennd1b-209/Dennd1b, intron 2 of 9)",1,138963435,139063718,100284,1,Dennd1b-209,47861,Dennd1b-209;Dennd1b-202;Dennd1b-205;Dennd1b-208;Dennd1b-201,Dennd1b;Dennd1b;Dennd1b;Dennd1b;Dennd1b,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,5,329260,ENSMUSG00000056268,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14165,cg01473155,-0.000036,0.0000157,-2.29599193,0.022343368,loss,ns,0.0000338,0.0000267,1.269088755,0.205361419,pos,ns,-0.003744445,0.007812673,-0.479278301,0.632078577,neg,ns,0.199228929,0.0000258,0.000268677,0.096127636,0.923481315,pos,ns,0.232637126,Hoxd4,Hoxd4_fiveUTR,2,74721978,74722027,74721978,74721979,50,-,CGTGATTCCAATAAACTTTGTTTTATGGCTTGAGAGTTGACAAGCCAAAA,Promoter (<=1kb),2,74721978,74729160,7183,1,Hoxd4-201,0,Gm28230-201;Hoxd3-203;Hoxd4-203;Hoxd4-201,Gm28230;Hoxd3;Hoxd4;Hoxd4,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,2,15436,ENSMUSG00000101174,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
4279,cg15597792,-0.0000491,0.00000758,-6.484625586,3.51E-10,loss,yes,0.0000163,0.0000129,1.269037984,0.205379502,pos,ns,-0.004190066,0.003772222,-1.110768493,0.267528805,neg,ns,0.572629451,-0.000285205,0.000129726,-2.198512851,0.028651278,neg,ns,0.757322113,Scube3,Scube3_Exon,17,28166084,28166133,28166084,28166085,50,+,CGACCTTTGCCCTGGGAGTGATGCCCACGGGCCTCTTGGAGCCACCAACG,"Exon (Scube3-201/Scube3, exon 16 of 22)",17,28142141,28174854,32714,1,Scube3-201,23943,Scube3-201;Scube3-207;Scube3-202;Scube3-203;Scube3-206;Scube3-205;Scube3-204,Scube3;Scube3;Scube3;Scube3;Scube3;Scube3;Scube3,0;0;0;0;7210;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,7,268935,ENSMUSG00000038677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20360,cg11785939,0.000106281,0.0000106,9.990691669,1.47E-20,gain,yes,0.0000229,0.0000181,1.268959778,0.205407358,pos,ns,0.012875452,0.005294631,2.431794143,0.015590339,pos,ns,1.807144441,-0.000120102,0.000182082,-0.659604094,0.509997645,neg,ns,0.272302442,Hoxc5,Hoxc5_threeUTR,15,103011614,103011663,103011614,103011615,50,+,CGTTTCTGTGTGAAGATTTTTAGCTGTATTTGTGGTCTCTGTATTTATAT,3' UTR,15,102967443,103015676,48234,1,Hoxc5-202,44171,Hoxc5-202;Hoxc5-201;Hoxc6-202;Hoxc6-203;Hoxc6-201,Hoxc5;Hoxc5;Hoxc6;Hoxc6;Hoxc6,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,134,15424,ENSMUSG00000022485,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
10123,cg26085807,0.000124802,0.0000115,10.87338123,1.52E-23,gain,yes,-0.0000247,0.0000195,-1.268874876,0.205437603,neg,ns,0.018119653,0.005712581,3.171885696,0.001666194,pos,ns,2.778274412,-0.000132695,0.000196455,-0.675447012,0.499895319,neg,ns,0.308838051,Gm28308,Gm28308_Intron,6,52197015,52197064,52197063,52197064,50,+,TGCACAATGTAAACTTTTGACCCTCAACTTTTTGACCTGCAGTTGTAACG,"Intron (Hoxaas3-202/Hoxaas3-202, intron 1 of 2)",6,52163359,52213339,49981,2,Gm28308-201,16275,Gm28308-201;Hoxa3-201;Hoxa3-203;Hoxa5-201,Gm28308;Hoxa3;Hoxa3;Hoxa5,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,46,103,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
19404,cg14002724,0.0000309,0.00000521,5.928514703,8.14E-09,gain,yes,0.0000112,0.00000886,1.268818302,0.205457758,pos,ns,0.004959671,0.002594794,1.911393158,0.056876011,pos,ns,1.245070873,0.0000123,0.0000892,0.138234201,0.890145074,pos,ns,0.096297933,Tbx15,Tbx15_Intron,3,99248793,99248842,99248793,99248794,50,-,CGATAGAACGCAGATAAATTTATGAAGGGCAAGCTAAGAGAATAATTACA,"Intron (Tbx15-203/Tbx15, intron 1 of 2)",3,99240381,99313065,72685,1,Tbx15-203,8412,Tbx15-203;Tbx15-201,Tbx15;Tbx15,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,4,21384,ENSMUSG00000027868,conserved gene but different region,3,99248627,99248972,346,*,346,24,0.494219653,1.13909465,0.069364162,8.90E-15,CpGisland,TRUE,U13,Hc-P
21718,cg27299745,0.0000299,0.00000837,3.575897675,0.00040473,gain,ns,0.000018,0.0000142,1.26880379,0.205462928,pos,ns,0.005839089,0.004164585,1.402081928,0.161891304,pos,ns,0.790776478,-0.0000867,0.00014322,-0.605039959,0.54559508,neg,ns,0.137258717,Slitrk1,Slitrk1_Exon,14,108913026,108913075,108913026,108913027,50,-,CGCATTATAAAAGTTAGCGAACTCATTAGGGAAAAGTCGAGTGAGGGAAT,"Exon (Slitrk1-201/Slitrk1, exon 1 of 1)",14,108908800,108914158,5359,2,Slitrk1-201,1083,Slitrk1-201,Slitrk1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,17,76965,ENSMUSG00000075478,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
4152,cg26980065,0.00000641,0.0000088,0.728175754,0.467055673,gain,ns,-0.000019,0.000015,-1.268767844,0.205475735,neg,ns,-0.007297959,0.004380498,-1.666011315,0.09672126,neg,ns,1.014478054,0.000166554,0.000150645,1.105607093,0.269753915,pos,ns,0.700390087,Gm12074,Gm12074_Intergenic_upstream,11,26981264,26981313,26981312,26981313,50,-,TTTTCAACCCTTTGTCCTGTCAGCTCAGTCCTTGATATCTTCATCTGCCG,Distal Intergenic,11,27051697,27051915,219,1,Gm12074-201,-70433,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,10,100042367,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6978,cg24025580,-0.00000172,0.00000222,-0.77825879,0.437010061,loss,ns,-0.00000478,0.00000376,-1.268751309,0.205481627,neg,ns,-0.003391055,0.001102672,-3.07530625,0.002290118,neg,ns,2.640142048,0.0000473,0.0000379,1.246109836,0.213664946,pos,ns,0.91556457,Gramd1b,Gramd1b_Exon,9,40316878,40316927,40316878,40316879,50,-,CGGAAGATGTTGCTGTAGAAGCAGATCCAATTTTCAGAGAGGTAGAGTCG,"Exon (Gramd1b-204/Gramd1b, exon 5 of 20)",9,40293233,40346290,53058,2,Gramd1b-204,29363,Gramd1b-204;Gramd1b-201;Gramd1b-214;Gramd1b-203;Gramd1b-212;Gramd1b-213;Gramd1b-202;Gramd1b-215;Gramd1b-209;Gramd1b-206;Gramd1b-210,Gramd1b;Gramd1b;Gramd1b;Gramd1b;Gramd1b;Gramd1b;Gramd1b;Gramd1b;Gramd1b;Gramd1b;Gramd1b,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,5,235283,ENSMUSG00000040111,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6993,cg07788138,-0.00000395,0.00000175,-2.251570284,0.025049374,loss,ns,0.00000378,0.00000298,1.26865679,0.205515306,pos,ns,0.001924958,0.000873433,2.203899407,0.028266218,pos,ns,1.548732289,-0.0000278,0.00003,-0.925047854,0.355660541,neg,ns,0.062890023,Dock4,Dock4_fiveUTR,12,40446053,40446102,40446101,40446102,50,+,GAGTGCCCCGGCGTGTTCGCTTAGTTCAGTGAATCAGAACAATGACTGCG,Promoter (<=1kb),12,40446053,40727447,281395,1,Dock4-207,0,Dock4-201;Dock4-210;Dock4-208;Dock4-207;Dock4-211;Dock4-209;Dock4-204;Zfp277-202;Zfp277-201,Dock4;Dock4;Dock4;Dock4;Dock4;Dock4;Dock4;Zfp277;Zfp277,0;0;0;0;0;0;-234;-279;-151,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,1,238130,ENSMUSG00000035954,conserved gene and region,12,40445782,40446660,879,*,879,97,0.682593857,0.947882736,0.110352674,4.31E-78,CpGisland,TRUE,U2,Pr-W
21125,cg17185595,0.000000327,0.00000157,0.208592032,0.83490372,gain,ns,0.00000338,0.00000266,1.268645048,0.20551949,pos,ns,0.003766519,0.000780338,4.826780744,0.00000218,pos,ns,5.661180815,-0.000100762,0.0000268,-3.754751472,0.000207177,neg,ns,0.05830954,Gm3191,Gm3191_Intergenic_downstream,12,106479868,106479917,106479868,106479869,50,-,CGGGGGCTTTGTTATGCAAATGTGGCTGAAATTGATAATTCCAAAGTGCT,Distal Intergenic,12,106459150,106459495,346,1,Gm3191-201,20767,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,11,13,100041191,NA,mapped to different genes,12,106479691,106479869,179,*,179,12,0.51396648,1.027259684,0.067039106,0.000000178,CpGisland,TRUE,U13,Hc-P
5938,cg19191583,0.0000604,0.00000621,9.731031873,1.06E-19,gain,yes,-0.0000134,0.0000106,-1.268520521,0.205563869,neg,ns,-0.003059891,0.00309121,-0.989868266,0.323010496,neg,ns,0.490783365,0.000239034,0.000106306,2.248532514,0.025244426,pos,ns,0.800806992,Cdon,Cdon_Intron,9,35424688,35424737,35424688,35424689,50,-,CGGCTCCAAGACCCTGGGAATTCCATTAGCGAGCACCTGAGGAATTTCTG,"Intron (Cdon-205/Cdon, intron 1 of 4)",9,35421128,35455365,34238,1,Cdon-205,3560,Cdon-205;Cdon-204;Cdon-202;Cdon-206,Cdon;Cdon;Cdon;Cdon,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,3,57810,ENSMUSG00000038119,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23467,cg16745091,0.00000621,0.00000313,1.981808817,0.048383622,gain,ns,0.00000676,0.00000533,1.268497966,0.205571908,pos,ns,0.003311908,0.001560258,2.122666608,0.034574173,pos,ns,1.461248201,-0.0000462,0.0000537,-0.861798004,0.389464812,neg,ns,0.954007381,Clasp1,Clasp1_Exon,1,118532001,118532050,118532049,118532050,50,-,CCCAGCATGAGTCAGGGGTGCAGCCGCGATACCAGCCGTGAGAGCAGCCG,"Exon (Clasp1-201/Clasp1, exon 23 of 40)",1,118389058,118609432,220375,1,Clasp1-201,142943,Clasp1-201;Clasp1-202;Clasp1-204;Clasp1-218;Clasp1-219;Clasp1-208;Clasp1-216;Clasp1-203;Clasp1-214;Clasp1-220;Clasp1-212;Clasp1-206;Clasp1-205;Clasp1-210;Clasp1-224;Clasp1-221;Clasp1-230;Clasp1-226;Clasp1-213,Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,8,76707,ENSMUSG00000064302,conserved gene and region,1,118531972,118532107,136,*,136,13,0.661764706,0.876984127,0.095588235,5.64E-10,CpGisland,TRUE,U10,Tr-S
8653,cg12855086,0.00000646,0.00000486,1.328928895,0.184848723,gain,ns,-0.0000105,0.00000826,-1.268261137,0.205656331,neg,ns,0.001311971,0.002421171,0.541874503,0.588294222,pos,ns,0.230405417,-0.0000987,0.0000833,-1.185100615,0.236885362,neg,ns,0.929053133,Gm12161,Gm12161_Intergenic_upstream,11,45491704,45491753,45491752,45491753,50,-,GGAATTCTGGCCAACCTAATTTGTATTTGAAAATACCCCATAGGCCAACG,Distal Intergenic,11,45280594,45280954,361,2,Gm12161-201,-210799,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,10,382510,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1955,cg03748949,-0.0000863,0.0000124,-6.951066352,2.15E-11,loss,yes,0.0000268,0.0000211,1.268205311,0.205676236,pos,ns,-0.013921404,0.006180338,-2.252531246,0.024987945,neg,ns,1.602269457,0.000218538,0.000212541,1.028213726,0.304650895,pos,ns,0.801757435,Hgf,Hgf_Exon,5,16578401,16578450,16578449,16578450,50,+,CCAGGCAGATTTACGTGACACTTTTCTTGGTGTGGTTTGCAGATATCCCG,"Exon (Hgf-204/Hgf, exon 8 of 19)",5,16553550,16620152,66603,1,Hgf-204,24851,Hgf-202;Hgf-204;Hgf-201;Hgf-203,Hgf;Hgf;Hgf;Hgf,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,8,15234,ENSMUSG00000028864,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12908,cg20712449,-0.000212418,0.0000193,-11.02436366,4.58E-24,loss,yes,0.0000415,0.0000327,1.268100888,0.20571347,pos,ns,0.030827964,0.009589924,3.214620208,0.00144384,pos,ns,2.840480856,-0.001278769,0.000329797,-3.877445326,0.000128899,neg,ns,0.408687397,Arid5b,Arid5b_Intron,10,68275630,68275679,68275630,68275631,50,+,CGTGTCATTATCTCAATTGAAAATTGTTTTAATATGGCTGAATAATTCAC,"Intron (Arid5b-204/Arid5b, intron 2 of 9)",10,68092520,68278740,186221,2,Arid5b-204,3061,Arid5b-204;Arid5b-201;Arid5b-202,Arid5b;Arid5b;Arid5b,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,33,71371,ENSMUSG00000019947,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
3254,cg02480299,-0.000018,0.0000129,-1.390571673,0.165352796,loss,ns,0.0000279,0.000022,1.268030291,0.205738646,pos,ns,0.019656195,0.00643777,3.053261637,0.002459855,pos,ns,2.609090429,-0.000771325,0.000221394,-3.483942989,0.000565231,neg,ns,0.822173408,Kcnma1,Kcnma1_Intron,14,23373785,23373834,23373785,23373786,50,+,CGTGATGCTCTTCGCAGTAAAAGCTTTAACAGGCTGCACTTTAAATATTT,"Intron (Kcnma1-207/Kcnma1, intron 19 of 27)",14,23289431,23803304,513874,2,Kcnma1-207,429470,Kcnma1-207;Kcnma1-210;Kcnma1-205;Kcnma1-201;Kcnma1-208;Kcnma1-209;Kcnma1-212;Kcnma1-204;Kcnma1-202;Kcnma1-211;Kcnma1-229;Kcnma1-234;Kcnma1-223;Kcnma1-214;Kcnma1-216;Kcnma1-219;Kcnma1-220;Kcnma1-224;Kcnma1-233;Kcnma1-236;Kcnma1-237;Kcnma1-213;Kcnma1-228;Kcnma1-203;Kcnma1-206;Kcnma1-221;Kcnma1-225;Kcnma1-226;Kcnma1-230;Kcnma1-235,Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,41,16531,ENSMUSG00000063142,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10436,cg03657398,-0.0000474,0.00000865,-5.473544567,9.12E-08,loss,yes,0.0000186,0.0000147,1.267997142,0.205750468,pos,ns,0.00224031,0.004306668,0.520195576,0.603298558,pos,ns,0.219467713,-0.000319427,0.000148106,-2.156746157,0.031794016,neg,ns,0.571043742,Prdm6,Prdm6_Intron,18,53538480,53538529,53538480,53538481,50,-,CGTTTTGTTTTTATTTTGAGGCTGACAATAATGTTTATTGGCATGTGTTC,"Intron (Prdm6-201/Prdm6, intron 3 of 6)",18,53464516,53575857,111342,1,Prdm6-201,73964,Prdm6-201;Prdm6-203;Prdm6-204,Prdm6;Prdm6;Prdm6,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,16,225518,ENSMUSG00000069378,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13851,cg17543458,-0.0000701,0.0000054,-12.97124689,4.95E-31,loss,yes,-0.0000116,0.00000918,-1.267873769,0.205794472,neg,ns,-0.010673716,0.002690019,-3.967895686,0.0000901,neg,ns,4.045089201,0.0000445,0.0000925,0.481150663,0.630748853,pos,ns,0.914213993,Robo1,Robo1_Intron,16,73105741,73105790,73105789,73105790,50,+,GCATGACAAATTATGAAACACATACTGTGAAAATTATGGACTCTGTCACG,"Intron (4930500H12Rik-208/4930500H12Rik-208, intron 2 of 5)",16,73006421,73008746,2326,1,Robo1-208,99320,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,8,19876,ENSMUSG00000022883,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21939,cg01005773,0.00000667,0.00000746,0.893797953,0.37212337,gain,ns,0.0000161,0.0000127,1.267817648,0.205814491,pos,ns,0.006888922,0.003711917,1.855893583,0.06441758,pos,ns,1.190995593,-0.000467458,0.000127653,-3.661960136,0.000294206,neg,ns,0.488879706,Nav3,Nav3_Exon,10,109764525,109764574,109764573,109764574,50,+,AGAGAGTAGATCTCACACTACCCGTTCTCATGAGCAGGCTCTGGACCTCG,"Exon (Nav3-201/Nav3, exon 16 of 39)",10,109681259,110000219,318961,2,Nav3-201,235645,Nav3-201;Nav3-208;Nav3-204;Nav3-207;Nav3-206,Nav3;Nav3;Nav3;Nav3;Nav3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,4,260315,ENSMUSG00000020181,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22550,cg12931096,-0.0000371,0.00000944,-3.933586254,0.000103317,loss,ns,0.0000203,0.000016,1.267757311,0.205836016,pos,ns,-0.003646576,0.004698416,-0.776128841,0.438264647,neg,ns,0.358263561,0.0000701,0.000161578,0.433938749,0.664634762,pos,ns,0.777653694,Gm13973,Gm13973_Intron,2,115095687,115095736,115095687,115095688,50,-,CGATTTGTTTGTTTACATTGTTTTCGATTTGCAATTGCTATGAAACAAAT,"Intron (Gm28494-201/Gm28494-201, intron 1 of 3)",2,115036419,115037312,894,2,Gm13973-201,-58424,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,13,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11943,cg23174567,-0.0000115,0.00000533,-2.166837143,0.031008689,loss,ns,0.0000115,0.00000905,1.267690339,0.205859909,pos,ns,0.002198314,0.002652121,0.828888843,0.407805056,pos,ns,0.389547395,-0.00000446,0.0000912,-0.048866838,0.961056885,neg,ns,0.911098547,Psmd14,Psmd14_Exon,2,61764899,61764948,61764947,61764948,50,-,GGCTTTCTGGTGTGGATATCAACACTCAGCAGAGCTTTGAAGCCTTGTCG,"Exon (Psmd14-201/Psmd14, exon 7 of 12)",2,61711694,61800376,88683,1,Psmd14-201,53205,Psmd14-201;Psmd14-206;Psmd14-207;Psmd14-208,Psmd14;Psmd14;Psmd14;Psmd14,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,9,59029,ENSMUSG00000026914,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4292,cg13484553,-0.000000722,0.00000215,-0.335763604,0.737276267,loss,ns,-0.00000463,0.00000365,-1.267618844,0.205885419,neg,ns,-0.001676183,0.001070628,-1.565608259,0.118460551,neg,ns,0.926426253,0.0000284,0.0000368,0.770798036,0.441413712,pos,ns,0.954986883,Olfm1,Olfm1_Exon,2,28214759,28214808,28214807,28214808,50,+,GACTACGATGAACTTCAGAGCAGAGTGTCCAATCTTGAAGAAAGGCTCCG,"Exon (Olfm1-204/Olfm1, exon 4 of 6)",2,28192992,28230462,37471,1,Olfm1-204,21767,Olfm1-205;Olfm1-204;Olfm1-202;Olfm1-203;Olfm1-201,Olfm1;Olfm1;Olfm1;Olfm1;Olfm1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,56177,ENSMUSG00000026833,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4149,cg11586890,-0.00000726,0.00000379,-1.915221481,0.056384213,loss,ns,-0.00000816,0.00000644,-1.267536312,0.205914869,neg,ns,-0.004318437,0.001886133,-2.289571312,0.022717978,neg,ns,1.643630331,0.0000412,0.0000649,0.635330815,0.525681361,pos,ns,0.856924021,Syngap1,Syngap1_threeUTR,17,26971128,26971177,26971176,26971177,50,-,GGCCCTATTACCCCTTGATTTCTCAGGAGCGTCTGGGGGGGCTCAGCACG,3' UTR,17,26941253,26972434,31182,1,Syngap1-204,29875,Gm50253-201;Syngap1-204;Syngap1-213;Syngap1-208;Syngap1-202;Syngap1-207;Syngap1-203;Syngap1-201;Syngap1-212;Syngap1-214;Syngap1-206;Syngap1-209;Syngap1-210;Zbtb9-201;Zbtb9-202,Gm50253;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Zbtb9;Zbtb9,-2040;0;0;0;0;0;0;0;0;0;0;0;0;-1990;-2040,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,threeUTR,6,18,240057,ENSMUSG00000067629,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
417,cg23054243,-0.0000153,0.00000546,-2.801429475,0.005407522,loss,ns,0.0000118,0.00000928,1.267526805,0.205918261,pos,ns,-0.000936318,0.002718266,-0.344454308,0.730738207,neg,ns,0.136238185,0.0000277,0.0000935,0.29675649,0.766851155,pos,ns,0.935668517,Kat5,Kat5_threeUTR,19,5603862,5603911,5603862,5603863,50,-,CGACTTCAGCCCCATCAGGATCTCCAGGATGGTCTGGGACCAGTAGCTTC,Promoter (<=1kb),19,5603014,5603966,953,2,Kat5-212,55,Kat5-212;Kat5-210;Kat5-201;Kat5-211;Kat5-202;Kat5-206;Kat5-203;Kat5-204;Kat5-209;Kat5-205;Kat5-207;Rnaseh2c-201;Rnaseh2c-202;Rnaseh2c-206;Rnaseh2c-205;Rnaseh2c-204;Rnaseh2c-203,Kat5;Kat5;Kat5;Kat5;Kat5;Kat5;Kat5;Kat5;Kat5;Kat5;Kat5;Rnaseh2c;Rnaseh2c;Rnaseh2c;Rnaseh2c;Rnaseh2c;Rnaseh2c,0;0;0;0;0;0;0;4359;0;0;0;1989;1975;0;1887;1627;1452,TRUE,FALSE,TRUE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,3,81601,ENSMUSG00000024926,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18435,cg22804672,-0.000000122,0.00000447,-0.027303933,0.978234888,loss,ns,0.00000963,0.0000076,1.267524621,0.205919041,pos,ns,0.003707779,0.002225389,1.666126256,0.096698348,pos,ns,1.014580944,-0.0000626,0.0000765,-0.817776908,0.414112684,neg,ns,0.498152951,Gm48995,Gm48995_Intergenic_downstream,14,95646148,95646197,95646148,95646149,50,+,CGTTTGTCACATTATTACTTGCTGTCACTTTTGAAGGTAGGTGTCTTTTT,Distal Intergenic,14,95729500,95729980,481,2,Gm48995-201,83783,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19263,cg25703087,-0.00000505,0.00000162,-3.115246494,0.002009771,loss,ns,0.00000349,0.00000275,1.267497438,0.205928741,pos,ns,-0.001614525,0.000806681,-2.00144172,0.046216078,neg,ns,1.335206914,0.0000257,0.0000277,0.925885082,0.355225924,pos,ns,0.03066722,Kmt2d,Kmt2d_fiveUTR,15,98871045,98871094,98871045,98871046,50,-,CGAGAACATGGCCAGAGCCCGGGCCGCTCCCCGACCTCCAACCGCCAGAG,Promoter (<=1kb),15,98831669,98871183,39515,2,Kmt2d-202,89,Kmt2d-202;Kmt2d-201,Kmt2d;Kmt2d,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,16,381022,ENSMUSG00000048154,conserved gene and region,15,98870996,98871176,181,*,181,14,0.657458564,0.734492754,0.077348066,1.85E-09,CpGisland,TRUE,U1,Pr-A
27240,cg19104606,-0.0000151,0.00000601,-2.505321504,0.012746619,loss,ns,0.0000129,0.0000102,1.267476342,0.20593627,pos,ns,0.002205822,0.002991194,0.737438626,0.461413448,pos,ns,0.335909752,-0.000159964,0.000102867,-1.555053945,0.120953511,neg,ns,0.902775561,Ptprt,Ptprt_Intron,2,161794849,161794898,161794849,161794850,50,-,CGTTATGGAGGAAATTAACACCTCAAAGCAAACTATAATTAGGAATTCTT,"Intron (Ptprt-203/Ptprt, intron 11 of 30)",2,161521990,162661147,1139158,2,Ptprt-203,866249,Ptprt-203;Ptprt-204;Ptprt-202;Ptprt-201;Ptprt-206,Ptprt;Ptprt;Ptprt;Ptprt;Ptprt,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,4,19281,ENSMUSG00000053141,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23392,cg14001428,-0.0000103,0.0000127,-0.805658079,0.421057572,loss,ns,0.0000274,0.0000216,1.267373657,0.205972918,pos,ns,0.000275928,0.006333581,0.04356581,0.965278553,pos,ns,0.015347343,0.000159679,0.000217811,0.733108324,0.464046359,pos,ns,0.387015591,Sox21,Sox21_Intergenic_downstream,14,118230597,118230646,118230597,118230598,50,-,CGGCTGAAAAAAAAACCTTGTGAAAAGAAACGCCTCACAATGGACACAGA,Distal Intergenic,14,118233232,118237030,3799,2,Sox21-201,6433,Sox21-201,Sox21,6384,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,26,27,223227,ENSMUSG00000061517,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
1044,cg20913086,-0.000000563,0.00000276,-0.204247049,0.838294471,loss,ns,0.00000594,0.00000469,1.267348056,0.205982056,pos,ns,0.004804494,0.001372566,3.5003723,0.00053276,pos,ns,3.273468761,-0.000153586,0.0000472,-3.25377183,0.001264575,neg,ns,0.946531231,Txndc11,Txndc11_threeUTR,16,11116865,11116914,11116865,11116866,50,-,CGGACAAACTTCTCAATGTAAACAGCACTCATGGGGCCTTTGTATTCGAT,3' UTR,16,11074911,11134650,59740,2,Txndc11-201,17736,Txndc11-201;Txndc11-202;Txndc11-205;Txndc11-204;Txndc11-209;Txndc11-207;Txndc11-203,Txndc11;Txndc11;Txndc11;Txndc11;Txndc11;Txndc11;Txndc11,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,3,106200,ENSMUSG00000022498,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2348,cg04237451,0.0000579,0.00000678,8.542711623,6.02E-16,gain,yes,-0.0000146,0.0000115,-1.267339976,0.20598494,neg,ns,0.007861387,0.003375355,2.329054695,0.020498568,pos,ns,1.688276483,-0.00026882,0.000116078,-2.315851371,0.021218626,neg,ns,0.065434505,Tfap2d,Tfap2d_Exon,1,19104391,19104440,19104391,19104392,50,+,CGTTTGATGCAGCTTGGCTGTCTGGAGTCAGTAGCCAATTCCACTGTCGC,"Exon (Tfap2d-201/Tfap2d, exon 2 of 8)",1,19103022,19166346,63325,1,Tfap2d-201,1369,Tfap2d-201;Tfap2d-202,Tfap2d;Tfap2d,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,23,226896,ENSMUSG00000042596,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
24354,cg02123171,0.0000545,0.0000114,4.766460495,0.00000289,gain,ns,-0.0000246,0.0000194,-1.267150013,0.206052754,neg,ns,0.010587343,0.005694126,1.859344666,0.063925585,pos,ns,1.194325291,-0.00020154,0.000195821,-1.029206224,0.30418512,neg,ns,0.189726087,Trim67,Trim67_Exon,8,124820306,124820355,124820354,124820355,50,-,AGGCCATCCACCAGCTGGACTTCATTCAGATGAAATGTAGGGGTGAGCCG,"Exon (Trim67-201/Trim67, exon 5 of 11)",8,124793092,124834702,41611,1,Trim67-201,27214,Trim67-201;Trim67-202;Trim67-203,Trim67;Trim67;Trim67,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,330863,ENSMUSG00000036913,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
12117,cg14517144,-0.00000453,0.0000026,-1.742330105,0.082442414,loss,ns,-0.0000056,0.00000442,-1.266930428,0.206131163,neg,ns,0.002014126,0.001294996,1.555314416,0.120891494,pos,ns,0.917604255,-0.0000187,0.0000445,-0.420219239,0.67461642,neg,ns,0.897830008,Hnrnph3,Hnrnph3_threeUTR,10,63018016,63018065,63018064,63018065,50,-,ACCTTTGTTCATTAGATACACATACCACCATCATATCCATCACCTCCTCG,3' UTR,10,63014664,63023894,9231,2,Hnrnph3-201,5829,Hnrnph3-201;Hnrnph3-202;Hnrnph3-204;Hnrnph3-205;Hnrnph3-206;Hnrnph3-203;Rufy2-202;Rufy2-205,Hnrnph3;Hnrnph3;Hnrnph3;Hnrnph3;Hnrnph3;Hnrnph3;Rufy2;Rufy2,0;0;0;-1848;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,7,432467,ENSMUSG00000020069,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3635,cg08687722,0.0000511,0.0000272,1.882670231,0.060681386,gain,ns,-0.0000584,0.0000461,-1.266813185,0.206173036,neg,ns,0.011293753,0.013515755,0.835599139,0.404024012,pos,ns,0.393592823,-0.00063648,0.000464806,-1.369345434,0.171882522,neg,ns,0.402047484,D130043K22Rik,D130043K22Rik_Exon,13,24880847,24880896,24880895,24880896,50,-,GGTTCAAGGTCTACTGATGACCAAAGAATTGTGTCCTATCTGTGGATCCG,"Exon (D130043K22Rik-202/D130043K22Rik, exon 14 of 20)",13,24845135,24901263,56129,1,D130043K22Rik-202,35712,D130043K22Rik-202;D130043K22Rik-201;D130043K22Rik-203,D130043K22Rik;D130043K22Rik;D130043K22Rik,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,210108,ENSMUSG00000006711,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19275,cg23220617,-0.000012,0.0000108,-1.119103034,0.263962562,loss,ns,-0.0000232,0.0000183,-1.26672347,0.206205083,neg,ns,0.001634005,0.005359053,0.304905488,0.76064274,pos,ns,0.118819276,-0.000189704,0.000184297,-1.02933899,0.30412285,neg,ns,0.686335928,Rara,Rara_Promoter,11,98925474,98925523,98925474,98925475,50,-,CGCCATCCACTGCTTGTCTCCTTCAGTTAAGATAATGAAGATGCTGAGAG,Promoter (2-3kb),11,98927818,98974162,46345,1,Rara-203,-2344,Cdc6-201;Cdc6-203;Cdc6-202;Cdc6-204;Rara-203,Cdc6;Cdc6;Cdc6;Cdc6;Rara,0;0;0;5008;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,12,19401,ENSMUSG00000037992,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
14342,cg16611496,-0.00000178,0.00000453,-0.393461405,0.694249192,loss,ns,-0.00000974,0.00000769,-1.26672229,0.206205504,neg,ns,-0.000727542,0.002253515,-0.322847467,0.747028409,neg,ns,0.126662882,0.0000983,0.0000775,1.268435345,0.205594229,pos,ns,0.897998564,Dph1,Dph1_Intron,11,75182822,75182871,75182870,75182871,50,+,CAACATTAAGCATTTCCATTACCTAAAATAATTAGGCGGCAGGAGACACG,"Intron (Dph1-201/Dph1, intron 6 of 12)",11,75177643,75190519,12877,2,Dph1-201,7648,Dph1-201;Dph1-205;Dph1-204;Dph1-203;Dph1-202;Ovca2-201;Ovca2-202,Dph1;Dph1;Dph1;Dph1;Dph1;Ovca2;Ovca2,0;0;-1510;0;0;-3987;-4035,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,116905,ENSMUSG00000078789,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27836,cg00464610,-0.00000227,0.00000135,-1.678568526,0.094243856,loss,ns,0.00000291,0.0000023,1.266476626,0.206293274,pos,ns,-0.000490042,0.000674268,-0.726776403,0.467911381,neg,ns,0.329836392,0.0000245,0.0000232,1.054544548,0.292454872,pos,ns,0.973701521,Esrrg,Esrrg_Intron,1,188186769,188186818,188186817,188186818,50,-,TTTCCAGTGCGGCATTTAATATCCCTCCATCTGTGCAGCTCTGTTTAGCG,"Intron (Esrrg-203/Esrrg, intron 6 of 7)",1,187609029,188214386,605358,1,Esrrg-203,577740,Esrrg-203;Esrrg-201;Esrrg-202,Esrrg;Esrrg;Esrrg,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,60,26381,ENSMUSG00000026610,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21460,cg27230404,-0.00000444,0.00000307,-1.446387059,0.149078976,loss,ns,0.00000661,0.00000522,1.266395352,0.206322317,pos,ns,0.003086241,0.001528208,2.01951615,0.044293795,pos,ns,1.353657111,-0.000108781,0.0000526,-2.069845552,0.039294813,neg,ns,0.946845022,Rbm6,Rbm6_fiveUTR,9,107833484,107833533,107833484,107833485,50,-,CGCAGACATAGCCATAGTCGTAACCTGGGGACAGCATTTAAATACAGACG,5' UTR,9,107773559,107872829,99271,2,Rbm6-201,39296,Rbm6-201;Rbm6-207;Rbm6-202;Rbm6-216;Rbm6-212;Rbm6-213;Rbm6-205,Rbm6;Rbm6;Rbm6;Rbm6;Rbm6;Rbm6;Rbm6,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,3,19654,ENSMUSG00000032582,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24455,cg04762133,-0.0000108,0.00000649,-1.664365054,0.097049896,loss,ns,-0.000014,0.000011,-1.266217399,0.206385919,neg,ns,-0.003528761,0.003232445,-1.091669364,0.275826165,neg,ns,0.559364539,0.0000681,0.000111164,0.612905073,0.540388481,pos,ns,0.901078362,Ago3,Ago3_Exon,4,126371739,126371788,126371787,126371788,50,+,GTTTGATGACTGGCAGGCCTCCTTGTTACATTACAAACACGGTATTTCCG,"Exon (Ago3-201/Ago3, exon 7 of 19)",4,126332732,126429556,96825,2,Ago3-201,57768,Ago3-201;Ago3-205,Ago3;Ago3,0;32506,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,8,214150,ENSMUSG00000028842,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10940,cg15169791,-0.0000117,0.00000307,-3.82023961,0.000161066,loss,ns,0.0000066,0.00000521,1.266169752,0.206402951,pos,ns,0.007071941,0.001527604,4.629434426,0.0000054,pos,ns,5.267647707,-0.000255061,0.0000525,-4.855146899,0.00000191,neg,ns,0.922611853,Tcf7l2,Tcf7l2_Intron,19,55894339,55894388,55894387,55894388,50,+,AATTGTGTTCTTAATCTTGTCCCTGATGGATGACTCGGAGTTCAGCAACG,"Intron (Tcf7l2-213/Tcf7l2, intron 4 of 13)",19,55741820,55933229,191410,1,Tcf7l2-213,152519,Tcf7l2-213;Tcf7l2-201;Tcf7l2-208;Tcf7l2-211;Tcf7l2-212;Tcf7l2-206;Tcf7l2-204;Tcf7l2-205;Tcf7l2-222;Tcf7l2-215;Tcf7l2-214;Tcf7l2-207;Tcf7l2-202;Tcf7l2-209;Tcf7l2-210;Tcf7l2-217;Tcf7l2-220;Tcf7l2-218;Tcf7l2-203;Tcf7l2-216;Tcf7l2-219;Tcf7l2-221,Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,55,88,21416,ENSMUSG00000024985,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25340,cg20375718,-0.00000722,0.00000671,-1.076529102,0.282527757,loss,ns,0.0000144,0.0000114,1.266010543,0.206459869,pos,ns,-0.002053401,0.003338656,-0.615038218,0.538980684,neg,ns,0.268426799,0.000190844,0.000114816,1.662168198,0.097489841,pos,ns,0.733112186,Nav1,Nav1_Exon,1,135460703,135460752,135460703,135460704,50,+,CGTCTCTGCCAGGTGTCGCAGGCGGGATGTCATATTCACCAGGCTCTGCT,"Exon (Nav1-201/Nav1, exon 14 of 30)",1,135434580,135585355,150776,2,Nav1-201,124603,Nav1-201;Nav1-202;Nav1-208;Nav1-205;Nav1-209;Nav1-206;Nav1-207,Nav1;Nav1;Nav1;Nav1;Nav1;Nav1;Nav1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,11,12,215690,ENSMUSG00000009418,mapped to different genes,1,135460699,135460813,115,*,115,9,0.565217391,0.980113636,0.07826087,0.00000296,CpGisland,TRUE,U11,Tr-P
17800,cg23449274,-0.000000359,0.00000175,-0.205569445,0.837262173,loss,ns,0.00000375,0.00000296,1.265955095,0.206479695,pos,ns,0.001462474,0.000868523,1.683864037,0.09321455,pos,ns,1.030516295,-0.0000145,0.0000299,-0.484043319,0.628696894,neg,ns,0.949558312,Ambra1,Ambra1_Exon,2,91772778,91772827,91772778,91772779,50,+,CGTCTGCCTTCAGTACAGTCCAGAGCAGCACTGCCGGCAACACGCTCCGC,"Exon (Ambra1-203/Ambra1, exon 8 of 19)",2,91730134,91918849,188716,1,Ambra1-203,42644,Ambra1-203;Ambra1-205;Ambra1-206;Ambra1-209;Ambra1-204;Ambra1-202;Ambra1-201;Ambra1-207,Ambra1;Ambra1;Ambra1;Ambra1;Ambra1;Ambra1;Ambra1;Ambra1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,12,228361,ENSMUSG00000040506,conserved gene and region,2,91772713,91772853,141,*,141,10,0.659574468,0.680501931,0.070921986,0.0000016,CpGisland,TRUE,U10,Tr-S
16657,cg08973498,-0.00000142,0.00000226,-0.628363325,0.530228624,loss,ns,0.00000487,0.00000385,1.265922495,0.206491352,pos,ns,0.003166923,0.001126592,2.811065427,0.005252152,pos,ns,2.279662709,-0.000123591,0.0000387,-3.190000197,0.001568334,neg,ns,0.945321947,Cab39,Cab39_Exon,1,85837297,85837346,85837297,85837298,50,-,CGTGGCTCAAATTTTCAACAATATTCTCAGAAGACAAATTGGTACGAGAA,"Exon (Cab39-202/Cab39, exon 4 of 9)",1,85793441,85851576,58136,1,Cab39-202,43856,Cab39-202;Cab39-204;Cab39-201,Cab39;Cab39;Cab39,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,12283,ENSMUSG00000036707,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26719,cg27573885,0.00000092,0.00000206,0.447332187,0.654947628,gain,ns,-0.00000442,0.00000349,-1.26580131,0.206534688,neg,ns,-0.001554924,0.001023715,-1.518902068,0.129806334,neg,ns,0.886704115,0.0000465,0.0000352,1.321269104,0.187386017,pos,ns,0.947761552,Camta1,Camta1_Exon,4,151835832,151835881,151835880,151835881,50,-,TGTTGAGAACACAGTAGGTGCTAGTTCCGCAGAATACACTTTGGGAAACG,"Exon (Camta1-211/Camta1, exon 2 of 25)",4,150917322,151861669,944348,2,Camta1-211,25788,Camta1-211;Camta1-202;Camta1-201;Camta1-210;Camta1-209;Camta1-212;Camta1-206,Camta1;Camta1;Camta1;Camta1;Camta1;Camta1;Camta1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,22,100072,ENSMUSG00000014592,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14030,cg11361507,-0.00000517,0.00000944,-0.548052343,0.584050378,loss,ns,0.0000203,0.000016,1.265744917,0.206554857,pos,ns,0.010469528,0.004697369,2.22880667,0.026543427,pos,ns,1.576043008,-0.000330548,0.000161542,-2.046200923,0.041579968,neg,ns,0.250854641,Lnpk,Lnpk_Intergenic_downstream,2,74298069,74298118,74298117,74298118,50,+,GCAAAATTGTTCTGCCATTCCACATTGATTATGGCAGCTATGTACAGACG,Distal Intergenic,2,74520341,74533106,12766,2,Lnpk-204,234988,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,15,16,69605,ENSMUSG00000009207,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19782,cg00809740,-0.00000434,0.00000176,-2.470152174,0.014043574,loss,ns,0.00000378,0.00000299,1.265626401,0.206597249,pos,ns,0.00110599,0.000875074,1.263880864,0.207222343,pos,ns,0.68356342,-0.000014,0.0000301,-0.466762376,0.640997761,neg,ns,0.04649886,Msl2,Msl2_fiveUTR,9,101075268,101075317,101075316,101075317,50,+,AAGTGTCTGCAATGAACCCCGTGAATGCTACTGCTCTCTACATTTCCGCG,5' UTR,9,101074101,101101785,27685,1,Msl2-202,1167,Msl2-202;Msl2-201,Msl2;Msl2,0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,19,77853,ENSMUSG00000066415,conserved gene but different region,9,101075182,101075428,247,*,247,16,0.514170041,0.987506247,0.064777328,1.37E-09,CpGisland,TRUE,U1,Pr-A
23134,cg14277483,0.0000668,0.0000152,4.393347366,0.0000153,gain,ns,-0.0000327,0.0000258,-1.265427964,0.206668242,neg,ns,0.026622587,0.007565845,3.518785534,0.000498447,pos,ns,3.302381396,-0.000750306,0.000260189,-2.883698485,0.004205366,neg,ns,0.49626701,Rnf220,Rnf220_Intron,4,117317681,117317730,117317681,117317682,50,+,CGATAAGGAAATTCGATTTGATTTGCTGCTGCGCATCAGATTGGCCCCAT,"Intron (Rnf220-201/Rnf220, intron 2 of 14)",4,117271463,117497052,225590,2,Rnf220-201,179322,Rnf220-201;Rnf220-202;Rnf220-207,Rnf220;Rnf220;Rnf220,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,4,117317524,117317713,190,*,190,13,0.478947368,1.193236715,0.068421053,3.62E-08,CpGisland,TRUE,U13,Hc-P
7702,cg25542004,0.0000122,0.0000075,1.623062738,0.105592429,gain,ns,0.0000161,0.0000127,1.26528042,0.206721039,pos,ns,0.008971979,0.003732009,2.404061181,0.01680064,pos,ns,1.774674175,0.00000671,0.000128343,0.052277482,0.958341266,pos,ns,0.873554367,Arhgap15,Arhgap15_Intron,2,43786289,43786338,43786337,43786338,50,-,CATAGAGTAATTAGCTAGAATGCTCAATGACCTGTGAGAGATTCAAATCG,"Intron (Arhgap15-203/Arhgap15, intron 2 of 14)",2,43748824,44395953,647130,1,Arhgap15-203,37465,Arhgap15-203;Arhgap15-202;Arhgap15-205;Arhgap15-201,Arhgap15;Arhgap15;Arhgap15;Arhgap15,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,72,78,76117,ENSMUSG00000049744,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14271,cg13832100,-0.00000325,0.00000557,-0.584243707,0.559481267,loss,ns,-0.000012,0.00000946,-1.265184268,0.206755451,neg,ns,-0.001648125,0.002772379,-0.594480239,0.552624571,neg,ns,0.257569809,-0.0000741,0.0000953,-0.777457991,0.437481505,neg,ns,0.805645548,Nhej1,Nhej1_Intron,1,75016004,75016053,75016004,75016005,50,-,CGGATGGAAATGCCCATAAAGCCGTATCAAACCCTGTGCAGAGAAGGACA,"Intron (Nhej1-201/Nhej1, intron 2 of 4)",1,74967139,75046639,79501,2,Nhej1-201,30586,Nhej1-201,Nhej1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,5,75570,ENSMUSG00000026162,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22010,cg06900718,-0.0000266,0.00000659,-4.038686468,0.0000678,loss,ns,-0.0000142,0.0000112,-1.265148145,0.20676838,neg,ns,-0.00845511,0.003279557,-2.578125408,0.010395135,neg,ns,1.98316987,0.000108911,0.000112784,0.965665805,0.334964154,pos,ns,0.84117899,Elavl4,Elavl4_Intergenic_downstream,4,110120805,110120854,110120805,110120806,50,-,CGCAGAGCCTAAGGAAGCTTTATGGAGATGGTCACACTCCAGTGCCCAGC,Distal Intergenic,4,110206359,110223148,16790,2,Elavl4-211,102343,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,36,15572,ENSMUSG00000028546,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25210,cg22042546,0.000111012,0.0000148,7.511058436,6.31E-13,gain,yes,-0.0000318,0.0000251,-1.265132717,0.206773903,neg,ns,0.069515562,0.007356094,9.450064656,8.62E-19,pos,yes,18.0645374,-0.001562076,0.000252975,-6.174812968,2.07E-09,neg,yes,0.175393422,Arid1a,Arid1a_Intron,4,133729464,133729513,133729464,133729465,50,+,CGGTAGTTAAGGAAGTCGGCACTGCTATTTATAACTCATCTCAAATTGAG,"Intron (Arid1a-202/Arid1a, intron 1 of 19)",4,133679008,133753611,74604,2,Arid1a-202,24098,Arid1a-202;Arid1a-205;Arid1a-201;Arid1a-203,Arid1a;Arid1a;Arid1a;Arid1a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,31,93760,ENSMUSG00000007880,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U5,En-Sd
8556,cg25857570,0.000052,0.0000206,2.52240359,0.012155993,gain,ns,-0.0000443,0.0000351,-1.26492848,0.206847016,neg,ns,0.016518573,0.010269791,1.608462478,0.108751835,pos,ns,0.963563406,-0.000459594,0.000353177,-1.30131258,0.194117789,neg,ns,0.246198078,Btrc,Btrc_Exon,19,45330037,45330086,45330085,45330086,50,+,GACATATCTCTCTTATTGCCCGAATGTAACACACCATCTAATTTACGTCG,"Exon (Gm28578-209/Gm28578-209, exon 6 of 7)",19,45363734,45507736,144003,1,Btrc-204,-33648,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,30,98,12234,ENSMUSG00000025217,conserved gene and region,19,45329908,45330151,244,*,244,14,0.471311475,1.056277056,0.057377049,8.59E-08,CpGisland,TRUE,NA,NRS
27010,cg10251050,-0.0000105,0.0000146,-0.718502579,0.472988641,loss,ns,-0.0000313,0.0000248,-1.264481043,0.207007258,neg,ns,-0.008373971,0.007261096,-1.153265388,0.249689899,neg,ns,0.602599027,0.000259449,0.000249708,1.039006317,0.299611501,pos,ns,0.684982109,Rbm39,Rbm39_threeUTR,2,156177345,156177394,156177345,156177346,50,-,CGTTCTTCATGGCCGTTGGCACTGCTCAACTTGTTCTCATCCTAAGCAGG,Promoter (<=1kb),2,156170040,156177383,7344,2,Rbm39-214,0,Rbm39-203;Rbm39-217;Rbm39-215;Rbm39-201;Rbm39-225;Rbm39-223;Rbm39-204;Rbm39-216;Rbm39-221;Rbm39-213;Rbm39-214;Rbm39-218;Rbm39-219;Rbm39-210;Rbm39-224;Rbm39-212;Rbm39-202;Rbm39-208;Rbm39-222;Rbm39-205;Rbm39-211,Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,11,13,170791,ENSMUSG00000027620,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
9719,cg08641508,-0.0000387,0.0000105,-3.690120371,0.000264699,loss,ns,0.0000225,0.0000178,1.264352431,0.207053334,pos,ns,0.005969622,0.005223836,1.142765983,0.254017563,pos,ns,0.595136255,-0.00046315,0.000179647,-2.578105031,0.010395735,neg,ns,0.670332559,Prkd1,Prkd1_Intergenic_downstream,12,50260856,50260905,50260904,50260905,50,-,TTTTTGGTAGATGATTAGTGCCCCGTGGGATCCAGAGACTTCTCTGATCG,Distal Intergenic,12,50341231,50649098,307868,2,Prkd1-201,388242,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,8,18760,ENSMUSG00000002688,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8753,cg05670124,-0.0000038,0.00000158,-2.396121529,0.017162062,loss,ns,0.0000034,0.00000269,1.264269963,0.207082884,pos,ns,-0.000880563,0.000788745,-1.116410799,0.265110915,neg,ns,0.576572391,0.0000268,0.0000271,0.988243749,0.323803991,pos,ns,0.963041045,Car11,Car11_threeUTR,7,45703454,45703503,45703454,45703455,50,+,CGCAGATGATGCCTACTTTCTTCAAGACCTGAGCCTGGAGCTCCTGTTCC,Promoter (<=1kb),7,45703483,45704609,1127,1,Car11-203,0,Car11-201;Car11-204;Car11-205;Car11-202;Car11-203;Dbp-201;Dbp-204;Dbp-203;Dbp-205;Dbp-202,Car11;Car11;Car11;Car11;Car11;Dbp;Dbp;Dbp;Dbp;Dbp,0;0;0;0;0;-1585;-1766;-1781;-3601;-4386,TRUE,FALSE,TRUE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,2,12348,ENSMUSG00000003273,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19406,cg17203937,0.000160288,0.0000107,15.0081548,1.20E-38,gain,yes,-0.0000229,0.0000181,-1.264263175,0.207085316,neg,ns,0.011499901,0.005315587,2.163430111,0.031271949,pos,ns,1.504845056,0.0000802,0.000182803,0.438919762,0.661025434,pos,ns,0.350393948,Tbx15,Tbx15_Intron,3,99255229,99255278,99255229,99255230,50,-,CGGTATTTGAGTTTAGTGCTGGGGAATTATTTTTATTAGTCGATGAAAAG,"Intron (Tbx15-203/Tbx15, intron 1 of 2)",3,99240381,99313065,72685,1,Tbx15-203,14848,Tbx15-203;Tbx15-201,Tbx15;Tbx15,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,4,21384,ENSMUSG00000027868,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
12134,cg09432555,-0.00000449,0.00000182,-2.462909285,0.014324769,loss,ns,0.00000391,0.00000309,1.264055036,0.207159909,pos,ns,0.002177684,0.000906609,2.402009395,0.016893391,pos,ns,1.772283177,-0.0000619,0.0000312,-1.985948283,0.047919606,neg,ns,0.945135388,Fbxl17,Fbxl17_Intron,17,63076209,63076258,63076209,63076210,50,+,CGCTCTTTAATGATACCCCAGACGCTGGCATTTTCAAATCAAATGAACAG,"Intron (Fbxl17-201/Fbxl17, intron 8 of 8)",17,63057452,63500017,442566,2,Fbxl17-201,423759,Fbxl17-201;Fbxl17-203;Fbxl17-204;Fbxl17-205,Fbxl17;Fbxl17;Fbxl17;Fbxl17,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,8,50758,ENSMUSG00000023965,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13612,cg27378835,0.00000127,0.00000796,0.159921265,0.873047247,gain,ns,0.0000171,0.0000135,1.264007656,0.207176891,pos,ns,0.000760175,0.003960014,0.191962586,0.847897193,pos,ns,0.071656802,0.0000199,0.000136185,0.14612432,0.883918221,pos,ns,0.087489789,Dlx1,Dlx1_Exon,2,71530214,71530263,71530214,71530215,50,-,CGGTCAGCAGCCACGCATCCAGCCCCTACATCAGTTCGGTGCAGTCCTAC,"Exon (Dlx1-201/Dlx1, exon 1 of 3)",2,71528113,71533980,5868,1,Dlx1-201,2101,Dlx1-201;Dlx1-202;Dlx1-205;Dlx1-204;Dlx1-203;Dlx1-206,Dlx1;Dlx1;Dlx1;Dlx1;Dlx1;Dlx1,0;0;0;0;0;-517,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,Exon,6,36,13390,ENSMUSG00000041911,conserved gene and region,2,71530032,71530315,284,*,284,23,0.64084507,0.820912404,0.080985916,1.08E-15,CpGisland,TRUE,U3,Pr-B
14145,cg21411486,0.00000613,0.00000217,2.822623702,0.005071138,gain,ns,-0.00000466,0.00000369,-1.263896999,0.207216559,neg,ns,-0.001461012,0.001081293,-1.351170681,0.177626035,neg,ns,0.750493379,0.0000719,0.0000372,1.932309077,0.054232261,pos,ns,0.053222376,Hoxd9,Hoxd9_Intron,2,74698885,74698934,74698885,74698886,50,+,CGAATGTGCAAAACTGATAGTTTTACTAACCTATAAAAACGTCTAGACGC,"Intron (Hoxd9-201/Hoxd9, intron 1 of 1)",2,74697727,74700208,2482,1,Hoxd9-201,1158,Hoxd10-201;Hoxd9-201,Hoxd10;Hoxd9,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,8,15438,ENSMUSG00000043342,mapped to different genes,2,74698885,74699026,142,*,142,11,0.478873239,1.381078691,0.077464789,0.00000016,CpGisland,TRUE,U13,Hc-P
323,cg09617216,0.000000512,0.00000411,0.124386744,0.901089685,gain,ns,-0.00000883,0.00000699,-1.263664985,0.207299747,neg,ns,-0.004243424,0.002046916,-2.07308172,0.038990545,neg,ns,1.409040695,0.0000271,0.0000704,0.384493192,0.700876566,pos,ns,0.789577969,Emid1,Emid1_Exon,11,5109576,5109625,5109576,5109577,50,-,CGTCTGGCCAGGAGCTCCAGCTGAGCCTGCTGCTGCAGGAAGCTCTGTAA,"Exon (Emid1-203/Emid1, exon 7 of 8)",11,5106265,5130778,24514,2,Emid1-203,21153,Emid1-203;Emid1-201;Emid1-208;Emid1-205;Emid1-202;Emid1-206;Rhbdd3-202;Rhbdd3-201;Rhbdd3-203;Rhbdd3-209;Rhbdd3-204,Emid1;Emid1;Emid1;Emid1;Emid1;Emid1;Rhbdd3;Rhbdd3;Rhbdd3;Rhbdd3;Rhbdd3,0;0;0;0;0;0;10650;10137;9419;9406;9339,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,140703,ENSMUSG00000034164,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18101,cg07907367,-0.0000175,0.00000417,-4.201264684,0.0000347,loss,ns,0.00000894,0.00000708,1.263519809,0.207351812,pos,ns,-0.000400873,0.002073888,-0.193295515,0.846854122,neg,ns,0.072191394,0.0000346,0.0000713,0.484936849,0.628063633,pos,ns,0.927139599,Gm12650,Gm12650_Intergenic_downstream,4,93873473,93873522,93873473,93873474,50,+,CGCTGAGCAATGAGGTTTCATATGCTGCTGGAGGACCCATTCATCTTAAT,Distal Intergenic,4,93802333,93802590,258,1,Gm12650-201,71140,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,102634336,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18225,cg06649032,-0.0000012,0.00000395,-0.304238829,0.761150067,loss,ns,-0.00000849,0.00000672,-1.263487947,0.207363241,neg,ns,-0.000135949,0.001968084,-0.06907689,0.944972952,neg,ns,0.024580622,-0.0000866,0.0000677,-1.27901045,0.201849953,neg,ns,0.933064082,Ap3b1,Ap3b1_Intron,13,94533663,94533712,94533711,94533712,50,-,AATTACTCACTTTCTTGATTGGCCTGCCCAAAATCAGAAAATGGAAACCG,"Intron (Ap3b1-201/Ap3b1, intron 24 of 26)",13,94358960,94566317,207358,1,Ap3b1-201,174703,Ap3b1-201;Ap3b1-205;Ap3b1-204;Ap3b1-203,Ap3b1;Ap3b1;Ap3b1;Ap3b1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,55,11774,ENSMUSG00000021686,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11677,cg13916372,-0.00000121,0.00000261,-0.462138675,0.644306045,loss,ns,0.0000056,0.00000443,1.263479803,0.207366162,pos,ns,0.000314192,0.001297814,0.24209323,0.808868,pos,ns,0.092122346,-0.0000373,0.0000446,-0.835303125,0.404190361,neg,ns,0.953402842,Myo9a,Myo9a_Exon,9,59875247,59875296,59875247,59875248,50,-,CGCTCCGATTTCTTGACTAGAGGTACTTTTGCCGATGGGGAGGGGGATAC,"Exon (Myo9a-205/Myo9a, exon 27 of 43)",9,59750896,59928866,177971,1,Myo9a-203,124351,Myo9a-203;Myo9a-205;Myo9a-206;Myo9a-207,Myo9a;Myo9a;Myo9a;Myo9a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,8,270163,ENSMUSG00000039585,conserved gene and region,9,59875212,59875313,102,*,102,9,0.529411765,1.35,0.088235294,0.00000109,CpGisland,TRUE,NA,NRS
12415,cg02963234,-0.0000045,0.00000371,-1.213158869,0.225992671,loss,ns,0.00000795,0.0000063,1.263030409,0.207527399,pos,ns,0.000628045,0.001844689,0.340461291,0.733739766,pos,ns,0.134457943,-0.0000143,0.0000634,-0.225726745,0.821562699,neg,ns,0.039145112,Klf7,Klf7_fiveUTR,1,64121391,64121440,64121391,64121392,50,-,CGAAGCTGCCATCTATTTCTGCAGCGCTGTTCGCTCCTAATGCAATCTTT,Promoter (<=1kb),1,64029447,64121491,92045,2,Klf7-202,51,Klf7-202;Klf7-201;Klf7-203,Klf7;Klf7;Klf7,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,6,21,93691,ENSMUSG00000025959,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
8465,cg07448217,-0.00000338,0.00000095,-3.55837842,0.000431555,loss,ns,0.00000204,0.00000161,1.262831555,0.207598774,pos,ns,0.00061088,0.000472601,1.292591795,0.19711487,pos,ns,0.705280611,-0.0000316,0.0000163,-1.94256599,0.052973928,neg,ns,0.027495571,Gpr137c,Gpr137c_fiveUTR,14,45219732,45219781,45219732,45219733,50,+,CGCCTCAAATGCTCGGGTTTCTCAGCTGATTGTCTCCAGCCGAGAGTTGT,Promoter (<=1kb),14,45219717,45224713,4997,1,Gpr137c-207,15,Gpr137c-207;Gpr137c-202;Gpr137c-205;Gpr137c-201;Gpr137c-206;Gpr137c-204;Txndc16-205;Txndc16-201;Txndc16-203;Txndc16-207;Txndc16-204;Txndc16-206;Txndc16-209;Txndc16-211;Txndc16-208;Txndc16-202,Gpr137c;Gpr137c;Gpr137c;Gpr137c;Gpr137c;Gpr137c;Txndc16;Txndc16;Txndc16;Txndc16;Txndc16;Txndc16;Txndc16;Txndc16;Txndc16;Txndc16,0;0;0;0;0;0;-307;-338;0;-342;-350;-335;-330;-336;-368;-342,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,6,70713,ENSMUSG00000049092,conserved gene and region,14,45219666,45220343,678,*,678,91,0.743362832,0.97309318,0.134218289,3.65E-82,CpGisland,TRUE,U6,En-Sp
9004,cg19427611,-0.00000606,0.00000172,-3.523720485,0.000489609,loss,ns,0.00000369,0.00000292,1.262825337,0.207601006,pos,ns,0.001526834,0.000855808,1.784083403,0.075388116,pos,ns,1.12269711,-0.0000448,0.0000294,-1.521189554,0.129231597,neg,ns,0.060875903,Trim8,Trim8_Intron,19,46503408,46503457,46503408,46503409,50,+,CGCTGCTGTGGCTGACATGATCCATGATGCTGGCATACCAATGAGGAAGT,"Intron (Trim8-201/Trim8, intron 1 of 5)",19,46501702,46516848,15147,1,Trim8-201,1706,Trim8-201,Trim8,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,21,93679,ENSMUSG00000025034,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
20364,cg22358580,0.0000376,0.00000643,5.846032022,1.28E-08,gain,yes,-0.0000138,0.0000109,-1.262793162,0.207612557,neg,ns,0.006204394,0.003200084,1.938821918,0.053430385,pos,ns,1.272211695,-0.000170111,0.000110051,-1.545748841,0.123185452,neg,ns,0.143034423,Hoxc5,Hoxc5_fiveUTR,15,103013851,103013900,103013899,103013900,50,+,TTCCATCACTAACCTCCCGGAGGTCATCAAGCCAAATTTATGAGTGGCCG,5' UTR,15,102967443,103015676,48234,1,Hoxc5-202,46408,Hoxc5-202;Hoxc5-201;Hoxc6-202;Hoxc6-203;Hoxc6-201,Hoxc5;Hoxc5;Hoxc6;Hoxc6;Hoxc6,0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,13,134,15424,ENSMUSG00000022485,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
10301,cg11420169,0.0000839,0.000018,4.651305692,0.00000489,gain,ns,-0.0000387,0.0000306,-1.262679105,0.207653506,neg,ns,0.01938664,0.008974929,2.160088453,0.031532026,pos,ns,1.501248119,-0.000520167,0.000308647,-1.685312057,0.092934677,neg,ns,0.386318462,Hibadh,Hibadh_Intron,6,52601696,52601745,52601744,52601745,50,-,TTATGACCATCAAGTTCACAATGCTGGTGGGCTGCCTTTTAATCCCTCCG,"Intron (Hibadh-201/Hibadh, intron 4 of 7)",6,52546228,52640389,94162,2,Hibadh-201,38644,Hibadh-201;Hibadh-203,Hibadh;Hibadh,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,13,58875,ENSMUSG00000029776,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
18710,cg02968236,0.0000112,0.000017,0.657063219,0.511627778,gain,ns,-0.0000365,0.0000289,-1.262496353,0.20771913,neg,ns,0.017642165,0.008476869,2.081212451,0.038234946,pos,ns,1.41753952,-0.000926385,0.000291519,-3.177789674,0.001633695,neg,ns,0.471100043,Tenm4,Tenm4_Exon,7,96798193,96798242,96798193,96798194,50,-,CGTTTTGCTTGGTTTATTATCCTGGAATGAGCACTCACCAAAAGCTCTTT,"Exon (Tenm4-206/Tenm4, exon 2 of 2)",7,96171246,96908569,737324,1,Tenm4-201,626947,Tenm4-201;Tenm4-203;Tenm4-202;Tenm4-210;Tenm4-206;Tenm4-212,Tenm4;Tenm4;Tenm4;Tenm4;Tenm4;Tenm4,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,17,26,23966,ENSMUSG00000048078,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6727,cg17363541,-0.0000777,0.0000189,-4.11331669,0.00005,loss,ns,0.0000405,0.0000321,1.262336566,0.20777652,pos,ns,0.003389988,0.009402342,0.360547164,0.718683539,pos,ns,0.143462302,-0.00000947,0.000323346,-0.029285978,0.976655355,neg,ns,0.799599406,Pcdh1,Pcdh1_threeUTR,18,38189769,38189818,38189817,38189818,50,-,CCTGCCCTCCTCGGTCCTGGTAAGGCACGAAGGTGGAGAGTTTGAGGGCG,3' UTR,18,38185914,38212053,26140,2,Pcdh1-203,22235,Pcdh1-203;Pcdh1-204,Pcdh1;Pcdh1,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,10,17,75599,ENSMUSG00000051375,conserved gene and region,18,38189705,38189846,142,*,142,14,0.704225352,0.821827201,0.098591549,6.59E-11,CpGisland,TRUE,U11,Tr-P
27825,cg00716196,-0.0000642,0.00000913,-7.031515462,1.31E-11,loss,yes,-0.0000196,0.0000155,-1.262217151,0.207819418,neg,ns,-0.001120155,0.004545525,-0.246430304,0.805512247,neg,ns,0.093927852,-0.000362314,0.00015632,-2.31776927,0.021112675,neg,ns,0.520322933,Esrrg,Esrrg_Intron,1,188154802,188154851,188154802,188154803,50,-,CGCATGCTAACACAATATGATTGAGCTGTAAAATGGAACGCTGTCGCCTC,"Intron (Esrrg-203/Esrrg, intron 6 of 7)",1,187609029,188214386,605358,1,Esrrg-203,545773,Esrrg-203;Esrrg-201;Esrrg-202,Esrrg;Esrrg;Esrrg,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,60,26381,ENSMUSG00000026610,conserved gene and region,1,188154784,188154881,98,*,98,9,0.479591837,1.603636364,0.091836735,0.000000773,CpGisland,TRUE,U9,En-Pp
16467,cg17414093,-0.00000437,0.0000016,-2.733671735,0.006623125,loss,ns,-0.00000342,0.00000271,-1.262062669,0.207874922,neg,ns,-0.0004773,0.000794833,-0.600503349,0.548609585,neg,ns,0.260736609,0.00000699,0.0000273,0.255661493,0.798381784,pos,ns,0.966724667,Ylpm1,Ylpm1_Exon,12,85060273,85060322,85060273,85060274,50,+,CGAAAAGCAAATGGGAGATGGACACATCTGAGGCAAAGCTAGGTGGGTAT,"Exon (Ylpm1-207/Ylpm1, exon 17 of 20)",12,84996321,85070492,74172,1,Ylpm1-207,63952,Ylpm1-207;Ylpm1-201;Ylpm1-202;Ylpm1-203;Ylpm1-208;Ylpm1-206;Ylpm1-205,Ylpm1;Ylpm1;Ylpm1;Ylpm1;Ylpm1;Ylpm1;Ylpm1,0;0;0;0;18046;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,13,56531,ENSMUSG00000021244,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10023,cg18828923,0.00000123,0.00000352,0.348418759,0.727762213,gain,ns,0.00000755,0.00000598,1.261941468,0.207918476,pos,ns,0.004440631,0.00175281,2.533435324,0.011787635,pos,ns,1.928573329,-0.000159406,0.0000603,-2.644463995,0.008598611,neg,ns,0.92262224,Dhx15,Dhx15_Intergenic_downstream,5,51931564,51931613,51931612,51931613,50,+,GAGTTGCTACAAGGTCTGTGTAAACTGAAAACCTAAATAACATTATGACG,Distal Intergenic,5,52153324,52157803,4480,2,Dhx15-206,226190,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,14,13204,ENSMUSG00000029169,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3266,cg11584409,-5.57E-08,0.00000133,-0.041940008,0.966573522,loss,ns,0.00000285,0.00000226,1.261910568,0.207929581,pos,ns,0.000584937,0.00066066,0.885382942,0.376636373,pos,ns,0.424077741,-0.0000189,0.0000227,-0.832866648,0.405561135,neg,ns,0.971787498,Kcnma1,Kcnma1_Exon,14,23425639,23425688,23425639,23425640,50,+,CGTTACCACGCACACGGCCTGACATGCATGAGCAGTCACGCTCAGAACGT,"Exon (Kcnma1-207/Kcnma1, exon 18 of 28)",14,23289431,23803304,513874,2,Kcnma1-207,377616,Kcnma1-207;Kcnma1-210;Kcnma1-205;Kcnma1-201;Kcnma1-208;Kcnma1-209;Kcnma1-212;Kcnma1-204;Kcnma1-202;Kcnma1-211;Kcnma1-229;Kcnma1-234;Kcnma1-223;Kcnma1-214;Kcnma1-216;Kcnma1-219;Kcnma1-220;Kcnma1-224;Kcnma1-233;Kcnma1-236;Kcnma1-237;Kcnma1-213;Kcnma1-228;Kcnma1-203;Kcnma1-206;Kcnma1-221;Kcnma1-225;Kcnma1-226;Kcnma1-230;Kcnma1-235;Kcnma1-217,Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,16,41,16531,ENSMUSG00000063142,conserved gene but different region,14,23425613,23425711,99,*,99,9,0.565656566,1.16015625,0.090909091,0.000000843,CpGisland,TRUE,U15,NS
10515,cg15516833,0.0000144,0.00000472,3.050961861,0.002478214,gain,ns,0.0000101,0.00000802,1.261893588,0.207935684,pos,ns,0.002619582,0.002350738,1.114365774,0.265985513,pos,ns,0.575142017,-0.000056,0.0000808,-0.692648701,0.489048577,neg,ns,0.908437973,Npas3,Npas3_Intron,12,53948158,53948207,53948158,53948159,50,-,CGCTGGTAATTAGATCTGCGAAGGATTTATTCTTTGCTGATTGGGGCTTT,"Intron (Npas3-204/Npas3, intron 5 of 10)",12,53248157,54069532,821376,1,Npas3-204,700001,Npas3-204;Npas3-201;Npas3-203,Npas3;Npas3;Npas3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,83,103,27386,ENSMUSG00000021010,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15298,cg08169784,-0.000000822,0.00000173,-0.476355259,0.634156869,loss,ns,0.0000037,0.00000293,1.261717917,0.207998827,pos,ns,0.003059735,0.000858657,3.563393882,0.00042371,pos,ns,3.372931307,-0.0000855,0.0000295,-2.895289703,0.004057132,neg,ns,0.96608446,Rhot1,Rhot1_Exon,11,80227289,80227338,80227289,80227290,50,+,CGATGGATTCCTCTCATAAATGAAAGAACAGACAAAGACAGCAGGTATTT,"Exon (Rhot1-203/Rhot1, exon 6 of 21)",11,80209019,80266812,57794,1,Rhot1-203,18270,Rhot1-203;Rhot1-202;Rhot1-204;Rhot1-209;Rhot1-201;Rhot1-205,Rhot1;Rhot1;Rhot1;Rhot1;Rhot1;Rhot1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,6,59040,ENSMUSG00000017686,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15446,cg16139529,-0.0000177,0.00000567,-3.116204409,0.002003453,loss,ns,-0.0000121,0.00000963,-1.261637209,0.208027842,neg,ns,-0.003694478,0.002820286,-1.309965912,0.191177244,neg,ns,0.718563803,0.000158055,0.000097,1.629606393,0.104200374,pos,ns,0.844725257,Tnrc6b,Tnrc6b_Exon,15,80918542,80918591,80918590,80918591,50,+,TTCACCTGGTGCCTGGCCCTACAGTGCCTCTGACAACTCCTTTACCAACG,"Exon (Tnrc6b-201/Tnrc6b, exon 21 of 25)",15,80711313,80941085,229773,1,Tnrc6b-201,207229,Tnrc6b-201;Tnrc6b-207;Tnrc6b-208;Tnrc6b-202;Tnrc6b-210,Tnrc6b;Tnrc6b;Tnrc6b;Tnrc6b;Tnrc6b,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,20,24,213988,ENSMUSG00000047888,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4534,cg12955887,0.00000646,0.0000189,0.341840402,0.73270262,gain,ns,0.0000405,0.0000321,1.26162424,0.208032505,pos,ns,0.004745978,0.009403974,0.504677938,0.614143607,pos,ns,0.211730065,0.000421456,0.000323402,1.303197398,0.193474472,pos,ns,0.510586553,Mnx1,Mnx1_Promoter,5,29487742,29487791,29487790,29487791,50,-,TTAATTGTATTCTTTCGTTTCTTATTTCCAATTAATTAGTCCTATCGACG,Promoter (9-10kb),5,29473034,29478470,5437,2,Mnx1-202,-9321,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,6,8,15285,ENSMUSG00000001566,mapped to different genes,5,29487637,29487864,228,*,228,12,0.346491228,1.753846154,0.052631579,0.00000229,CpGisland,TRUE,U13,Hc-P
3153,cg18252413,0.00000146,0.0000033,0.443521109,0.65769824,gain,ns,0.00000707,0.0000056,1.261545825,0.208060698,pos,ns,0.002644946,0.001641472,1.611325704,0.108126397,pos,ns,0.966068267,0.00000925,0.0000565,0.1639051,0.869912662,pos,ns,0.931638624,Lrmda,Lrmda_Intron,14,23015682,23015731,23015682,23015683,50,+,CGCTGTCCCTGGGTTATATGGCAGCCATTTAAAAGTTTAATCAATACACT,"Intron (Lrmda-201/Lrmda, intron 6 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,995970,Lrmda-201;Lrmda-206,Lrmda;Lrmda,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4634,cg01876093,-0.000000761,0.00000146,-0.520771701,0.602897584,loss,ns,-0.00000313,0.00000248,-1.261486571,0.208082004,neg,ns,-0.000195408,0.000727397,-0.268639588,0.788385733,neg,ns,0.103261244,-0.0000225,0.000025,-0.8978643,0.369954696,neg,ns,0.951789685,Sptan1,Sptan1_Exon,2,30001089,30001138,30001137,30001138,50,-,CCTCTGTGCAGGACACGCATAACTAAGGAGGCCGGCAGTGTATCTCTGCG,"Exon (Sptan1-203/Sptan1, exon 23 of 57)",2,29965560,30031448,65889,1,Sptan1-205,35529,Sptan1-205;Sptan1-204;Sptan1-203;Sptan1-202;Sptan1-201;Sptan1-208;Sptan1-211;Sptan1-216,Sptan1;Sptan1;Sptan1;Sptan1;Sptan1;Sptan1;Sptan1;Sptan1,0;0;0;0;0;0;-746;-2950,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,7,20740,ENSMUSG00000057738,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10896,cg19054645,-0.0000272,0.00000598,-4.546681704,0.00000783,loss,ns,0.0000128,0.0000102,1.261424928,0.208104172,pos,ns,-0.007222486,0.002974517,-2.428120674,0.015746094,neg,ns,1.802827173,0.000160271,0.000102293,1.566781045,0.118186053,pos,ns,0.951537691,Pcbd2,Pcbd2_Intron,13,55754502,55754551,55754502,55754503,50,+,CGGACATCCGCTAATCCAGTGGTTAGCTGTTCCGGGCTCTAATGCACACT,"Intron (Pcbd2-201/Pcbd2, intron 2 of 3)",13,55727368,55776828,49461,1,Pcbd2-201,27134,Pcbd2-201;Pcbd2-202,Pcbd2;Pcbd2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,5,72562,ENSMUSG00000021496,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1420,cg26411814,-0.00000101,0.00000339,-0.297482292,0.766297577,loss,ns,-0.00000726,0.00000576,-1.2613536,0.208129823,neg,ns,0.00288596,0.001686739,1.710969371,0.088087111,pos,ns,1.055087631,-0.0000446,0.000058,-0.769336729,0.442279217,neg,ns,0.928911679,Cntf,Cntf_threeUTR,19,12765291,12765340,12765339,12765340,50,-,GTAAGAGCAGTCAGGTCTGAACGAATCTTCCTTGCTAGCCAGATAGAGCG,Promoter (<=1kb),19,12763660,12765632,1973,2,Cntf-201,292,Cntf-201;Zfp91-203;Zfp91-201,Cntf;Zfp91;Zfp91,0;0;30786,TRUE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,2,12803,ENSMUSG00000079415,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15962,cg05075312,0.0000117,0.00000705,1.665172535,0.09688859,gain,ns,-0.0000151,0.000012,-1.261308828,0.208145926,neg,ns,-0.008339547,0.00351132,-2.375046216,0.01815488,neg,ns,1.741006614,0.000118644,0.000120754,0.982528615,0.326605678,pos,ns,0.831072211,Gm8447,Gm8447_Intron,13,84057201,84057250,84057201,84057202,50,+,CGTCTAGACAGTACCCCATCAGTCTGGCTAAATTTGGTGCTGGCATTCCC,"Intron (Gm17750-201/Gm17750-201, intron 1 of 1)",13,83997547,83998439,893,2,Gm8447-201,-58762,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,9,667081,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9025,cg06949148,-0.0000323,0.0000064,-5.04440504,0.000000776,loss,yes,-0.0000137,0.0000109,-1.260909822,0.208289472,neg,ns,-0.004656452,0.003185571,-1.461732399,0.144827483,neg,ns,0.839149018,-0.0000979,0.000109552,-0.893969377,0.372031787,neg,ns,0.870562706,Ptk7,Ptk7_Exon,17,46576348,46576397,46576396,46576397,50,-,CCACGTCATGGATCACCAGGGAGCCATTCTGGAAGATGTGCATCCTGTCG,"Exon (Ptk7-201/Ptk7, exon 13 of 20)",17,46564471,46629504,65034,2,Ptk7-201,53107,Ptk7-202;Ptk7-201,Ptk7;Ptk7,-3398;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,71461,ENSMUSG00000023972,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22286,cg14194584,0.00000225,0.00000264,0.851322823,0.39524718,gain,ns,0.00000566,0.00000449,1.260906326,0.20829073,pos,ns,0.002855269,0.001315159,2.171045203,0.030686175,pos,ns,1.513057242,-0.000141972,0.0000452,-3.139017244,0.001858308,neg,ns,0.946603307,Tead1,Tead1_threeUTR,7,112906565,112906614,112906565,112906566,50,+,CGGTACATATGTGTGATAACTTTAATACCCATGACAGTTAAGTGCAATTA,3' UTR,7,112679320,112906805,227486,1,Tead1-216,227245,Tead1-216;Tead1-217;Tead1-201;Tead1-202,Tead1;Tead1;Tead1;Tead1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,16,21676,ENSMUSG00000055320,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8344,cg21420628,-0.00000319,0.00000221,-1.445844242,0.1492311,loss,ns,0.00000473,0.00000375,1.260818012,0.208322511,pos,ns,0.00286094,0.001098103,2.605348078,0.009620819,pos,ns,2.016787956,-0.0000905,0.0000378,-2.395249515,0.017202172,neg,ns,0.960333537,Zeb2,Zeb2_Intron,2,45032340,45032389,45032340,45032341,50,-,CGTCAAGTAAAAGAAAGGTTAAAATTAGAAAATTCAATTTATTTGATAAT,"Intron (Zeb2-212/Zeb2, intron 3 of 10)",2,44983632,45117395,133764,2,Zeb2-212,85006,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-218;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23173,cg25579241,0.0000143,0.00000878,1.628986445,0.104331626,gain,ns,-0.0000188,0.0000149,-1.260754368,0.208345417,neg,ns,-0.009154463,0.00437189,-2.093937304,0.037077529,neg,ns,1.43088922,0.00028882,0.000150349,1.920996607,0.055649058,pos,ns,0.857541608,Rnf220,Rnf220_Intron,4,117380174,117380223,117380222,117380223,50,-,AACGTTATATACTGCACAAGTGTTGTTTTCTTGCCAATTATCTGCAGGCG,"Intron (Rnf220-201/Rnf220, intron 2 of 14)",4,117271463,117497052,225590,2,Rnf220-201,116829,Rnf220-201;Rnf220-202;Rnf220-207,Rnf220;Rnf220;Rnf220,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22953,cg10179392,-0.0000322,0.000013,-2.487168282,0.013402124,loss,ns,0.0000278,0.000022,1.260715785,0.208359304,pos,ns,0.010301269,0.006450879,1.596878259,0.111311673,pos,ns,0.953459289,-0.000664629,0.000221845,-2.995914621,0.002957022,neg,ns,0.726373104,Gm13991,Gm13991_Intergenic_downstream,2,116324225,116324274,116324225,116324226,50,-,CGAAAATCAATTATAGTAACTATTTAGAAATGTAAAGGAAAGGCAGTAAA,Distal Intergenic,2,116527843,116528490,648,2,Gm13991-201,204265,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,14,20,433464,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21568,cg02061994,-0.0000186,0.00000593,-3.137281377,0.001869001,loss,ns,-0.0000127,0.0000101,-1.260464988,0.20844959,neg,ns,0.0000912,0.002949711,0.030916726,0.975355846,pos,ns,0.010836909,-0.0000997,0.00010144,-0.983238413,0.326256862,neg,ns,0.883394524,Itpr1,Itpr1_Exon,6,108377754,108377803,108377754,108377755,50,+,CGGGACCTGGACTTTGCCAATGATGCCAGCAAGGTGCTGGGCTCCATTGC,"Exon (Itpr1-201/Itpr1, exon 15 of 62)",6,108213096,108551109,338014,1,Itpr1-201,164658,Itpr1-201;Itpr1-205;Itpr1-209;Itpr1-208,Itpr1;Itpr1;Itpr1;Itpr1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,5,16438,ENSMUSG00000030102,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15011,cg18271715,-0.0000273,0.0000131,-2.081146444,0.038241029,loss,ns,-0.0000281,0.0000223,-1.260454012,0.208453542,neg,ns,-0.013586025,0.006525584,-2.081963097,0.038165823,neg,ns,1.418325374,0.000192,0.000224414,0.855562148,0.39290079,pos,ns,0.684806974,Gm6317,Gm6317_Intergenic_upstream,13,78451535,78451584,78451535,78451536,50,+,CGAAACTGGGGCAATTTTAATGCTTTTGTACCTTACCAGTGCTCTATTTT,Distal Intergenic,13,78372987,78379128,6142,2,Gm6317-201,-72407,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,11,622365,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4701,cg18435088,-0.00000132,0.00000329,-0.400206291,0.689280222,loss,ns,0.00000704,0.00000559,1.260410417,0.208469239,pos,ns,-0.00015157,0.001636313,-0.092628853,0.926258253,neg,ns,0.03326791,0.0000869,0.0000563,1.544157937,0.123570264,pos,ns,0.941467132,Nrf1,Nrf1_Exon,6,30169683,30169732,30169683,30169684,50,+,CGGTAATTCACTGACTGAGACTGTTCACAGTGAATTCTACCAGTGCCATA,"Exon (Mir183-201/Mir183-201, exon 1 of 1)",6,30116115,30140904,24790,1,Nrf1-214,53568,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,5,18181,ENSMUSG00000058440,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
9673,cg00297951,-0.000013,0.0000084,-1.548047737,0.122631051,loss,ns,0.000018,0.0000143,1.260399934,0.208473013,pos,ns,0.013200439,0.004182745,3.155927233,0.001757053,pos,ns,2.755215143,-0.000490895,0.000143844,-3.412682606,0.000728695,neg,ns,0.807108109,Gm7481,Gm7481_Intergenic_upstream,12,49887399,49887448,49887447,49887448,50,+,ACAATGAGATGATGACTCAGAGTCCTTTGCTGTAGCTGTGTCAACTGCCG,Distal Intergenic,12,49840757,49841751,995,2,Gm7481-201,-45648,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,27,37,665077,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11890,cg04784672,0.000108519,0.00000948,11.44637936,1.54E-25,gain,yes,-0.0000203,0.0000161,-1.260050317,0.208598931,neg,ns,0.015606526,0.004718604,3.307445483,0.001052227,pos,ns,2.977890606,-0.00024781,0.000162272,-1.527120734,0.127750622,neg,ns,0.119303725,Lrfn5,Lrfn5_fiveUTR,12,61524739,61524788,61524739,61524740,50,+,CGACTGTGAAAGCCACCTGGAGCCACCTTGCCGGGATTGTACCTGCAGGC,5' UTR,12,61523150,61605008,81859,1,Lrfn5-203,1589,Lrfn5-203;Lrfn5-204;Lrfn5-201;Lrfn5-202,Lrfn5;Lrfn5;Lrfn5;Lrfn5,0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,4,238205,ENSMUSG00000035653,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
20595,cg18081760,-0.00000125,0.00000161,-0.775098033,0.438872562,loss,ns,-0.00000345,0.00000274,-1.260020724,0.208609592,neg,ns,-0.000593628,0.000802939,-0.739318865,0.460272842,neg,ns,0.33698465,0.00000133,0.0000276,0.04817562,0.961607302,pos,ns,0.965279629,Hipk1,Hipk1_Exon,3,103777705,103777754,103777705,103777706,50,-,CGGCCTAGGAACTCCAAGACTTCATAGCTATTGGTCATAGAGCAAAGGAT,"Exon (Gm15886-201/Gm15886-201, exon 5 of 7)",3,103739815,103791563,51749,2,Hipk1-203,13809,Hipk1-203;Hipk1-202;Hipk1-201;Hipk1-206;Hipk1-205,Hipk1;Hipk1;Hipk1;Hipk1;Hipk1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,11,15257,ENSMUSG00000008730,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27439,cg10998986,-0.00000538,0.00000311,-1.729518075,0.084711832,loss,ns,-0.00000665,0.00000528,-1.260009001,0.208613815,neg,ns,-0.002931178,0.001547279,-1.894407396,0.059101507,neg,ns,1.228401445,0.0000583,0.0000532,1.095244708,0.274259632,pos,ns,0.928156778,Pbx1,Pbx1_Intron,1,168182965,168183014,168183013,168183014,50,+,CGACATAGCTTGTCGCTATGAATTTTCATGCTAGTCAGGAGCCGCCAGCG,"Intron (Pbx1-208/Pbx1, intron 7 of 7)",1,168119364,168432270,312907,2,Pbx1-208,249256,Pbx1-208;Pbx1-205;Pbx1-206;Pbx1-201;Pbx1-202,Pbx1;Pbx1;Pbx1;Pbx1;Pbx1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,84,18514,ENSMUSG00000052534,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12861,cg21684851,-0.00000403,0.00000339,-1.189062669,0.235325008,loss,ns,0.00000725,0.00000575,1.259936057,0.208640095,pos,ns,0.004060913,0.001685661,2.40909191,0.016575125,pos,ns,1.780543179,-0.000107763,0.000058,-1.858944919,0.063982414,neg,ns,0.938438484,Bend4,Bend4_Intron,5,67422602,67422651,67422602,67422603,50,+,CGTGATTTGTTTTCTTAACTGAAGGATAAACTTGTAACATGCTGAGAAAA,"Intron (Bend4-201/Bend4, intron 1 of 4)",5,67392147,67427799,35653,2,Bend4-201,5148,Bend4-201;Bend4-203;Bend4-202;Bend4-205;Bend4-204,Bend4;Bend4;Bend4;Bend4;Bend4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,7,666938,ENSMUSG00000092060,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4660,cg23564550,-0.00000152,0.00000163,-0.936017711,0.349992656,loss,ns,0.00000349,0.00000277,1.259930915,0.208641948,pos,ns,0.001744036,0.000810565,2.151631051,0.032198601,pos,ns,1.492162997,-0.0000339,0.0000279,-1.21614399,0.224855289,neg,ns,0.071632049,Hes1,Hes1_Exon,16,30066325,30066374,30066325,30066326,50,+,CGTGGTTGTGAGAGGCATTCAGCTACATTTTACTGCCTTGGCTCACTCTT,Promoter (<=1kb),16,30066338,30067319,982,1,Hes1-204,0,Hes1-202;Hes1-201;Hes1-203;Hes1-204,Hes1;Hes1;Hes1;Hes1,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,20,15205,ENSMUSG00000022528,conserved gene and region,16,30066223,30066328,106,*,106,15,0.698113208,1.169117647,0.141509434,3.45E-14,CpGisland,TRUE,U1,Pr-A
3307,cg17100901,-0.00000345,0.00000488,-0.707323653,0.479896754,loss,ns,-0.0000104,0.00000829,-1.259892202,0.208655896,neg,ns,-0.006020409,0.002427916,-2.479660923,0.013681848,neg,ns,1.863855246,0.000196163,0.0000835,2.349373014,0.019432308,pos,ns,0.884584511,Kcnma1,Kcnma1_threeUTR,14,23526519,23526568,23526567,23526568,50,-,TGATGCAACTGACTTACTTTCTGCCTCCATGTTTGTTAAAAGTCCCGCCG,3' UTR,14,23289431,23803304,513874,2,Kcnma1-207,276736,Kcnma1-207;Kcnma1-210;Kcnma1-205;Kcnma1-201;Kcnma1-208;Kcnma1-209;Kcnma1-212;Kcnma1-204;Kcnma1-202;Kcnma1-211;Kcnma1-229;Kcnma1-234;Kcnma1-223;Kcnma1-214;Kcnma1-216;Kcnma1-219;Kcnma1-220;Kcnma1-224;Kcnma1-233;Kcnma1-236;Kcnma1-237;Kcnma1-213;Kcnma1-228;Kcnma1-203;Kcnma1-206;Kcnma1-221;Kcnma1-225;Kcnma1-226;Kcnma1-230;Kcnma1-235;Kcnma1-217;Kcnma1-238;Kcnma1-231;Kcnma1-218;Kcnma1-222;Kcnma1-232,Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,13,41,16531,ENSMUSG00000063142,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27540,cg04321805,-0.0000726,0.000012,-6.060977438,3.92E-09,loss,yes,0.0000257,0.0000204,1.259858119,0.208668177,pos,ns,-0.00198668,0.005964909,-0.333061174,0.739313245,neg,ns,0.131171513,-0.0000821,0.000205133,-0.400284671,0.689222557,neg,ns,0.559057442,Gm5265,Gm5265_Intergenic_downstream,1,169386020,169386069,169386068,169386069,50,-,GGGATATCAATCTTCCCTCTGTCAGGCCATGCCTGGTATAAAGTTTTTCG,Distal Intergenic,1,169453528,169453869,342,2,Gm5265-201,67849,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,13,13,383613,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5507,cg16551659,-0.00000363,0.00000201,-1.807149679,0.071708326,loss,ns,-0.0000043,0.00000342,-1.259685063,0.20873054,neg,ns,-0.000440963,0.001000818,-0.44060285,0.659807622,neg,ns,0.180582672,0.0000139,0.0000344,0.404013365,0.686481461,pos,ns,0.957261085,Pbx3,Pbx3_Intergenic_downstream,2,34136761,34136810,34136761,34136762,50,+,CGGCACCCTGATTACAATTATCTTTTAATAGGAAAACTTGTCAGTTTTTG,Distal Intergenic,2,34172873,34288852,115980,2,Pbx3-210,152042,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,82,18516,ENSMUSG00000038718,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4503,cg15889617,-0.0000171,0.00000492,-3.476699438,0.000580127,loss,ns,-0.0000105,0.00000835,-1.259646713,0.208744362,neg,ns,0.003872523,0.002446284,1.58302304,0.114435847,pos,ns,0.941437911,0.000000486,0.0000841,0.005775829,0.995395296,pos,ns,0.085569733,Dpf1,Dpf1_Exon,7,29309698,29309747,29309698,29309699,50,-,CGGAGACTCAACATCCTGGAGGACCCCAGACTCAGGCCCTGCGAGTACAA,"Exon (Dpf1-204/Dpf1, exon 3 of 12)",7,29303951,29317264,13314,1,Dpf1-204,5747,Dpf1-204;Dpf1-201;Dpf1-203;Dpf1-208;Dpf1-202;Dpf1-210;Dpf1-207;Dpf1-205;Dpf1-209;Dpf1-206,Dpf1;Dpf1;Dpf1;Dpf1;Dpf1;Dpf1;Dpf1;Dpf1;Dpf1;Dpf1,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,4,29861,ENSMUSG00000030584,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11977,cg08683365,0.00000607,0.0000133,0.456478172,0.648365819,gain,ns,-0.0000284,0.0000226,-1.259484827,0.208802715,neg,ns,-0.006517835,0.006617027,-0.985009525,0.325387542,neg,ns,0.487599078,-0.000255987,0.000227559,-1.124927592,0.261489951,neg,ns,0.723472105,Lrfn5,Lrfn5_Exon,12,61843384,61843433,61843432,61843433,50,+,CTTGGCCATATATGATGATGGCATCACTTCCCTCACTGCCACAAGAGTCG,"Exon (Lrfn5-201/Lrfn5, exon 4 of 4)",12,61523948,61845258,321311,1,Lrfn5-201,319436,Lrfn5-201;Lrfn5-202,Lrfn5;Lrfn5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,4,238205,ENSMUSG00000035653,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23888,cg00619575,0.000000315,0.000000654,0.481362827,0.630598254,gain,ns,0.0000014,0.00000111,1.259457843,0.208812442,pos,ns,0.000649687,0.000325442,1.996319008,0.046773568,pos,ns,1.3299995,-0.0000192,0.0000112,-1.715035646,0.087338,neg,ns,0.979905767,Ctnnb1,Ctnnb1_Promoter,9,120929854,120929903,120929902,120929903,50,-,CACCATGTTGCCTACTAACCAAAAGATCAAAAATTATCGATTTCATGGCG,Promoter (<=1kb),9,120929216,120950635,21420,1,Ctnnb1-203,638,Ctnnb1-203;Ctnnb1-201;Ctnnb1-208;Ctnnb1-209;Ctnnb1-214;Ctnnb1-204;Ctnnb1-207,Ctnnb1;Ctnnb1;Ctnnb1;Ctnnb1;Ctnnb1;Ctnnb1;Ctnnb1,0;0;0;0;0;0;-3915,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,2,9,12387,ENSMUSG00000006932,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4826,cg26899445,0.00000063,0.00000196,0.320841269,0.748546864,gain,ns,0.0000042,0.00000334,1.259399238,0.208833571,pos,ns,0.001760588,0.000977511,1.801093089,0.072659924,pos,ns,1.138705062,-0.0000361,0.0000336,-1.074017679,0.283650033,neg,ns,0.946315731,Mapre3,Mapre3_Exon,5,30863324,30863373,30863324,30863325,50,-,CGGCAGGGCCAGGACGTAGCGCCACCTCCTAACCCAGGTGATCAGATCTT,"Exon (Mapre3-201/Mapre3, exon 4 of 7)",5,30814641,30866106,51466,1,Mapre3-201,48683,Mapre3-201;Mapre3-203;Mapre3-202;Mapre3-205;Mapre3-206;Mapre3-204;Tmem214-202,Mapre3;Mapre3;Mapre3;Mapre3;Mapre3;Mapre3;Tmem214,0;0;0;0;0;-1149;-4639,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,6,100732,ENSMUSG00000029166,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15831,cg15198945,-0.0000394,0.00000674,-5.845789415,1.28E-08,loss,yes,0.0000144,0.0000114,1.259396561,0.208834536,pos,ns,-0.005415963,0.003352363,-1.615565856,0.107205446,neg,ns,0.969783153,0.000257937,0.000115287,2.237339071,0.025974589,pos,ns,0.810027843,Scube1,Scube1_Exon,15,83629354,83629403,83629402,83629403,50,-,GGAGGTGGCCCTGGCGGGCAGGCTGCAGACCTCCGCAGTGGGTTGTCCCG,"Exon (Scube1-204/Scube1, exon 9 of 21)",15,83604999,83725021,120023,2,Scube1-204,95618,Scube1-204;Scube1-202;Scube1-201;Scube1-203;Scube1-205,Scube1;Scube1;Scube1;Scube1;Scube1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,8,64706,ENSMUSG00000016763,conserved gene and region,15,83629339,83629493,155,*,155,12,0.664516129,0.731707317,0.077419355,0.000000036,CpGisland,TRUE,NA,NRS
20300,cg03873904,0.0000147,0.00000375,3.911224021,0.000112869,gain,ns,-0.00000803,0.00000638,-1.259359954,0.208847734,neg,ns,0.000898143,0.00186867,0.480632053,0.631117043,pos,ns,0.199890092,-0.00000703,0.0000643,-0.109386503,0.912966713,neg,ns,0.032645836,Hoxc5,Hoxc5_Exon,15,102991177,102991226,102991177,102991178,50,+,CGTCTCCCAGCCTCATGTTTCCATGGATGAGACCCCACGGTGAGAAGCCT,"Exon (Hoxc8-201/Hoxc8, exon 1 of 2)",15,102967443,103015676,48234,1,Hoxc5-202,23734,Hoxc5-202;Hoxc8-201;Hoxc8-202,Hoxc5;Hoxc8;Hoxc8,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,72,134,15424,ENSMUSG00000022485,conserved gene and region,15,102990435,102991303,869,*,869,73,0.63406214,0.844205792,0.084004603,1.12E-49,CpGisland,TRUE,U13,Hc-P
4762,cg07045182,0.000000488,0.00000134,0.363148815,0.716741218,gain,ns,-0.00000287,0.00000228,-1.259311546,0.208865189,neg,ns,-0.001361868,0.000668736,-2.036482255,0.042551509,neg,ns,1.371085033,0.0000121,0.000023,0.524341296,0.60041589,pos,ns,0.035195366,Ier5l,Ier5l_Exon,2,30473945,30473994,30473993,30473994,50,+,TTCGGGAGCTGTGGATCTTGCGCAGGGAGATGCTGATCAGGCTCTGGGCG,Promoter (<=1kb),2,30471537,30474219,2683,2,Ier5l-201,225,Ier5l-201,Ier5l,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,13,72500,ENSMUSG00000089762,conserved gene and region,2,30473689,30474742,1054,*,1054,111,0.680265655,0.91031746,0.105313093,9.07E-87,CpGisland,TRUE,U3,Pr-B
24028,cg15185840,0.0000613,0.0000193,3.16751782,0.001690621,gain,ns,-0.0000414,0.0000329,-1.259277432,0.208877489,neg,ns,0.014557576,0.009628847,1.511871145,0.13158536,pos,ns,0.880792425,-0.000619091,0.000331135,-1.869602755,0.062481543,neg,ns,0.427602222,Cux2,Cux2_Intron,5,122017123,122017172,122017171,122017172,50,+,AAATTGATCCATTTCAAAATCTAATCAACAGAATAGGATTCTTTCATACG,"Intron (Cux2-202/Cux2, intron 2 of 22)",5,121856366,122049851,193486,2,Cux2-202,32679,Cux2-202;Cux2-201;Cux2-207;Cux2-203,Cux2;Cux2;Cux2;Cux2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,21,13048,ENSMUSG00000042589,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
18601,cg23832666,0.0000567,0.0000114,4.956450828,0.00000118,gain,yes,0.0000245,0.0000194,1.259147681,0.20892428,pos,ns,0.00123391,0.005692447,0.216762634,0.828535913,pos,ns,0.081688662,0.0000951,0.000195763,0.485939288,0.627353514,pos,ns,0.168914465,Hoxb5,Hoxb5_Exon,11,96304120,96304169,96304120,96304121,50,-,CGAGGGGCAGACTCCGCAAATATTCCCCTGGATGAGGAAGCTTCACATCA,Promoter (<=1kb),11,96303336,96306121,2786,1,Hoxb5-202,784,Hoxb5-202;Hoxb5-201;Hoxb6-202;Hoxb6-201,Hoxb5;Hoxb5;Hoxb6;Hoxb6,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,22,34,15413,ENSMUSG00000038700,conserved gene and region,11,96303706,96304121,416,*,416,40,0.675480769,0.879120879,0.096153846,5.87E-30,CpGisland,TRUE,U3,Pr-B
9599,cg27257879,-0.000019,0.00000838,-2.267328755,0.024058444,loss,ns,0.0000179,0.0000142,1.258968858,0.208988779,pos,ns,-0.001127628,0.004168387,-0.270519003,0.786941016,neg,ns,0.104057819,-0.00024397,0.00014335,-1.701911482,0.089774524,neg,ns,0.832517725,Tenm3,Tenm3_Intron,8,49462687,49462736,49462735,49462736,50,+,CTCTCATTAAAATGATTTTTATCTGCAACTGATTGTTGATAAAACAATCG,"Intron (4930555F03Rik-205/4930555F03Rik-205, intron 6 of 9)",8,48646261,48843951,197691,2,Tenm3-207,-618736,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,39,23965,ENSMUSG00000031561,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15625,cg16421820,-0.00000211,0.00000244,-0.863198199,0.388695832,loss,ns,-0.00000523,0.00000415,-1.258752021,0.209067009,neg,ns,-0.000886677,0.001216317,-0.728985541,0.466560885,neg,ns,0.331091674,-0.0000216,0.0000418,-0.516701717,0.605732809,neg,ns,0.959931301,Nfib,Nfib_Exon,4,82310310,82310359,82310358,82310359,50,-,AAGTAATTCCCAATGTATCCTCACTGGTACTGGGGTATAAATGCCTGCCG,"Exon (Nfib-201/Nfib, exon 11 of 12)",4,82290173,82505308,215136,2,Nfib-201,194949,Nfib-201;Nfib-203;Nfib-202;Nfib-205;Nfib-206;Nfib-204,Nfib;Nfib;Nfib;Nfib;Nfib;Nfib,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,66,18028,ENSMUSG00000008575,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10071,cg14986854,0.0000643,0.0000118,5.432026834,0.000000113,gain,yes,-0.0000253,0.0000201,-1.258667163,0.20909763,neg,ns,0.062545147,0.005894219,10.61127011,1.21E-22,pos,yes,21.91850394,-0.001011876,0.000202702,-4.991948556,0.000000999,neg,yes,0.665433531,Dhx15,Dhx15_Exon,5,52157570,52157619,52157618,52157619,50,-,CTGTGGGACTAAACAAGGTTGGTATGGGCCCAACACAAACGCCCATATCG,"Exon (Dhx15-201/Dhx15, exon 11 of 14)",5,52150203,52190514,40312,2,Dhx15-201,32895,Dhx15-201;Dhx15-207;Dhx15-206;Dhx15-205;Dhx15-204,Dhx15;Dhx15;Dhx15;Dhx15;Dhx15,0;0;0;0;4014,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,14,13204,ENSMUSG00000029169,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21646,cg03541551,0.00000192,0.00000312,0.614890182,0.539078323,gain,ns,-0.00000668,0.00000531,-1.258643962,0.209106002,neg,ns,0.000346057,0.001554608,0.222600933,0.823992701,pos,ns,0.084076635,-0.00000281,0.0000535,-0.052629838,0.958060741,neg,ns,0.937361238,Prkar2a,Prkar2a_Exon,9,108733174,108733223,108733174,108733175,50,+,CGTGGCAGTTTTGGAGAACTAGCTCTGATGTACAACACCCCGAGAGCTGC,"Exon (Prkar2a-201/Prkar2a, exon 6 of 11)",9,108692143,108750436,58294,1,Prkar2a-201,41031,Prkar2a-203;Prkar2a-201;Prkar2a-206;Prkar2a-202,Prkar2a;Prkar2a;Prkar2a;Prkar2a,43860;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,19087,ENSMUSG00000032601,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25265,cg26518080,-0.0000102,0.00000253,-4.026961576,0.0000711,loss,ns,0.0000054,0.00000429,1.258624768,0.209112929,pos,ns,0.00021725,0.001257634,0.172745124,0.862964502,pos,ns,0.064007069,0.000105967,0.0000432,2.450105001,0.014834105,pos,ns,0.953564724,Etv6,Etv6_Exon,6,134261742,134261791,134261742,134261743,50,-,CGAAAACTTCATCCGATGGGAGGACAAAGAATCCAAAATATTCCGGATAG,"Exon (Etv6-201/Etv6, exon 6 of 8)",6,134035700,134270155,234456,1,Etv6-201,226042,Etv6-201;Etv6-202;Etv6-205,Etv6;Etv6;Etv6,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,7,14011,ENSMUSG00000030199,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10171,cg00222474,0.000153258,0.0000134,11.4065487,2.12E-25,gain,yes,-0.0000287,0.0000228,-1.258570702,0.209132441,neg,ns,0.023688309,0.0066872,3.542336167,0.000457574,pos,ns,3.339538567,-0.000477521,0.000229972,-2.076426735,0.038678159,neg,ns,0.230938481,Gm28308,Gm28308_Exon,6,52208354,52208403,52208402,52208403,50,+,AGGGCGAGGCGCCACTGAGGTCCTTATCAGAATAGAAACACGAGGCCCCG,"Exon (Hoxa6-201/Hoxa6, exon 1 of 2)",6,52163359,52213339,49981,2,Gm28308-201,4936,Gm28308-201;Hoxa3-201;Hoxa3-203;Hoxa5-201;Hoxa6-201,Gm28308;Hoxa3;Hoxa3;Hoxa5;Hoxa6,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,30,103,,NA,mapped to different genes,6,52208187,52208437,251,*,251,14,0.589641434,0.643589744,0.055776892,0.000000122,CpGisland,TRUE,U3,Pr-B
8236,cg04438009,0.0000008,0.0000348,0.022965267,0.981692753,gain,ns,0.0000745,0.0000592,1.258496956,0.209159058,pos,ns,-0.005096317,0.017342152,-0.293868797,0.769054817,neg,ns,0.114042703,0.000926201,0.000596395,1.552999345,0.121443576,pos,ns,0.590951486,Slf2,Slf2_Intergenic_upstream,19,44893706,44893755,44893706,44893707,50,+,CGACCCGTAATTTGGACCCATGCCACGCTATTGGCAGGAAGACAGAATAA,Distal Intergenic,19,44931151,44983188,52038,1,Slf2-201,-37396,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,15,17,226151,ENSMUSG00000036097,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23964,cg07832424,-0.00000418,0.00000141,-2.965808253,0.003253438,loss,ns,0.00000302,0.0000024,1.258451525,0.209175457,pos,ns,0.000599239,0.000702194,0.853380221,0.394107386,pos,ns,0.404385426,-0.0000187,0.0000241,-0.774933065,0.438969896,neg,ns,0.961635927,Erp29,Erp29_threeUTR,5,121429361,121429410,121429409,121429410,50,-,GTCCCATGGGGGTTTAAAAGCCGCATCGAATGCAGTTGAATTAGCGCCCG,3' UTR,5,121428590,121452487,23898,2,Erp29-204,23077,Erp29-204;Naa25-201;Naa25-205;Naa25-202;Naa25-203,Erp29;Naa25;Naa25;Naa25;Naa25,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,11,11,67397,ENSMUSG00000029616,mapped to different genes,5,121429273,121429444,172,*,172,10,0.523255814,0.856147337,0.058139535,0.00000923,CpGisland,TRUE,U10,Tr-S
22004,cg16794543,-0.000029,0.0000126,-2.303134231,0.021933003,loss,ns,0.0000269,0.0000214,1.258407714,0.209191271,pos,ns,-0.007924872,0.006262818,-1.265384293,0.206683868,neg,ns,0.684693419,0.000194035,0.000215378,0.900905492,0.368337929,pos,ns,0.690249946,Gm4991,Gm4991_Intergenic_downstream,X,110077917,110077966,110077965,110077966,50,-,AATTAAGTTGGCAGCATCCTTTTAATTCATCAAACATACAACACATGGCG,Distal Intergenic,20,109910221,109911772,1552,1,Gm4991-201,167745,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,245573,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16774,cg11577341,-0.00000459,0.00000108,-4.2331347,0.0000304,loss,ns,0.00000232,0.00000184,1.258344018,0.209214265,pos,ns,0.00048852,0.000539403,0.905668764,0.36581456,pos,ns,0.436739013,-0.0000194,0.0000186,-1.043554518,0.297504635,neg,ns,0.044368243,Pcbp1,Pcbp1_Exon,6,86525026,86525075,86525026,86525027,50,-,CGCCCGATTATGCAGCCAATTAAGTTATTTGGAATGGTGAGTTCATGGGT,"Exon (Pcbp1-201/Pcbp1, exon 1 of 1)",6,86524492,86526321,1830,2,Pcbp1-201,1246,Pcbp1-201,Pcbp1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,14,15,23983,ENSMUSG00000051695,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
13331,cg17062816,0.0000207,0.00000831,2.493177588,0.013181889,gain,ns,0.0000178,0.0000141,1.258218945,0.209259422,pos,ns,0.002528317,0.004136743,0.611185355,0.541524774,pos,ns,0.26638167,-0.000148731,0.000142262,-1.045470674,0.296619999,neg,ns,0.689877327,Nr2f2,Nr2f2_Intergenic_downstream,7,70130022,70130071,70130022,70130023,50,+,CGGCCCCATATTTGCATCGGTGACTGGCACTCTATTAGGATTGGTATCAA,Distal Intergenic,7,70353074,70355237,2164,2,Nr2f2-203,225166,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,19,69,11819,ENSMUSG00000030551,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8633,cg04213448,0.000241632,0.0000373,6.481214059,3.58E-10,gain,yes,-0.0000797,0.0000633,-1.258154076,0.209282844,neg,ns,0.043998291,0.018555596,2.371160238,0.018343361,pos,ns,1.736521093,-0.000766133,0.000638125,-1.20059964,0.230823143,neg,ns,0.614533551,Fermt2,Fermt2_Exon,14,45475562,45475611,45475610,45475611,50,+,ACCCTCGGTACCTTTGGATTCAAATCAAAAAAGCTGTAATACTTGAATCG,"Exon (Fermt2-201/Fermt2, exon 6 of 15)",14,45458795,45530118,71324,2,Fermt2-201,54507,Fermt2-201;Fermt2-202;Fermt2-204,Fermt2;Fermt2;Fermt2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,3,218952,ENSMUSG00000037712,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27174,cg07368750,-0.00000599,0.00000261,-2.289872282,0.022700296,loss,ns,0.00000559,0.00000444,1.258100652,0.209302136,pos,ns,0.001577353,0.001301366,1.212074909,0.226406698,pos,ns,0.645110729,0.0000251,0.0000448,0.561367965,0.574952297,pos,ns,0.922218678,Cacybp,Cacybp_Exon,1,160203596,160203645,160203644,160203645,50,+,TCTCTCTTGATTCCACCCAGGCTTTATTAATGGTTCGCTTCATATCATCG,"Exon (Cacybp-201/Cacybp, exon 6 of 6)",1,160202367,160212875,10509,2,Cacybp-201,9230,Cacybp-201;Cacybp-203;Cacybp-202;Mrps14-201;Mrps14-203;Mrps14-202,Cacybp;Cacybp;Cacybp;Mrps14;Mrps14;Mrps14,0;9160;9081;8381;8381;8293,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,12301,ENSMUSG00000014226,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6798,cg06833700,0.00000325,0.0000037,0.87925192,0.379945734,gain,ns,-0.0000079,0.00000628,-1.258078547,0.209310119,neg,ns,0.004837616,0.001839064,2.630477515,0.008952337,pos,ns,2.048063563,-0.000197067,0.0000632,-3.115910584,0.002005389,neg,ns,0.925720979,Luc7l2,Luc7l2_fiveUTR,6,38555063,38555112,38555063,38555064,50,+,CGTGAGTTGAAACATTGGTCACACTATATAAAGTTTGTATATGTGAATCA,5' UTR,6,38551334,38605040,53707,1,Luc7l2-213,3729,Luc7l2-213;Luc7l2-208;Luc7l2-201;Luc7l2-209;Luc7l2-212;Luc7l2-211;Luc7l2-206;Luc7l2-207;Luc7l2-205;Luc7l2-202;Luc7l2-204;Luc7l2-210,Luc7l2;Luc7l2;Luc7l2;Luc7l2;Luc7l2;Luc7l2;Luc7l2;Luc7l2;Luc7l2;Luc7l2;Luc7l2;Luc7l2,0;0;0;0;3532;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,6,10,192196,ENSMUSG00000029823,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26347,cg15471501,0.0000344,0.0000076,4.53131703,0.00000838,gain,ns,0.0000162,0.0000129,1.258049466,0.209320621,pos,ns,0.012472525,0.00378204,3.297830131,0.001087648,pos,ns,2.963511633,-0.000270947,0.000130064,-2.083178002,0.038054174,neg,ns,0.180848105,Kiz,Kiz_Intron,2,146836821,146836870,146836821,146836822,50,+,CGATGCAATTTATTCCAATGGGCGGTTTTTAAGAAGCTGGCAATTTGAAC,"Intron (Gm14114-201/Gm14114-201, intron 1 of 1)",2,146855864,146970097,114234,1,Kiz-201,-18994,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,29,228730,ENSMUSG00000074749,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
10833,cg02230860,0.0000805,0.0000227,3.548513498,0.000447386,gain,ns,-0.0000485,0.0000385,-1.2578273,0.209400867,neg,ns,-0.007767143,0.011287459,-0.688121495,0.491890855,neg,ns,0.308131251,0.000525238,0.000388175,1.3530963,0.177010792,pos,ns,0.559040012,Fam193b,Fam193b_fiveUTR,13,55569789,55569838,55569789,55569790,50,-,CGATGCAGTGTCTGCAGAGCCAAACGCATCTTCCGCCACGCCTCATCCTC,5' UTR,13,55539316,55571100,31785,2,Fam193b-206,1262,Fam193b-206;Fam193b-201;Fam193b-203;Tmed9-203,Fam193b;Fam193b;Fam193b;Tmed9,0;0;0;-3894,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,11,212483,ENSMUSG00000021495,conserved gene and region,13,55569789,55569856,68,*,68,8,0.647058824,1.185185185,0.117647059,0.000000614,CpGisland,TRUE,NA,NRS
4090,cg23510032,0.0000562,0.0000247,2.277597557,0.023431253,gain,ns,-0.0000527,0.0000419,-1.257755057,0.209426966,neg,ns,0.001169531,0.012283452,0.095211917,0.92420802,pos,ns,0.034230267,0.00032068,0.000422427,0.759138197,0.448346728,pos,ns,0.444357028,Smarca2,Smarca2_fiveUTR,19,26749879,26749928,26749927,26749928,50,+,TTTGCTGGCTTGTTAATTTTATCCCCACTAACTGTGATTTCTGATAGCCG,5' UTR,19,26605050,26778275,173226,1,Smarca2-216,144829,Smarca2-216;Smarca2-201;Smarca2-209;Smarca2-202;Smarca2-206;Smarca2-239;Smarca2-215;Smarca2-223;Smarca2-214;Smarca2-211;Smarca2-229;Smarca2-225;Smarca2-240;Smarca2-242;Smarca2-227;Smarca2-204;Smarca2-221;Smarca2-246;Smarca2-244;Smarca2-203;Smarca2-237;Smarca2-220;Smarca2-238;Smarca2-210;Smarca2-213;Smarca2-228;Smarca2-218;Smarca2-241;Smarca2-233;Smarca2-243;Smarca2-230;Smarca2-205;Smarca2-234;Smarca2-224;Smarca2-231;Smarca2-207;Smarca2-226;Smarca2-217,Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;-361;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,6,8,67155,ENSMUSG00000024921,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4009,cg16322258,-0.00000384,0.0000286,-0.134375243,0.893193056,loss,ns,0.000061,0.0000485,1.25745807,0.20953428,pos,ns,0.008257818,0.014216837,0.580847766,0.561765086,pos,ns,0.250445256,-0.000340603,0.000488916,-0.696649043,0.486544493,neg,ns,0.890960912,Gm50479,Gm50479_Intergenic_downstream,8,26420777,26420826,26420777,26420778,50,+,CGGTCTAGACACCTTCCTGTTGTATGAAGATCAATGCTGCTCGGTCATGC,Distal Intergenic,8,26237222,26237407,186,1,Gm50479-201,183555,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,21,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4769,cg14375000,0.00000145,0.00000393,0.370200315,0.711486042,gain,ns,-0.00000839,0.00000667,-1.257336766,0.209578125,neg,ns,-0.004559611,0.001955271,-2.331958043,0.020343133,neg,ns,1.691582156,0.0000923,0.0000672,1.37293473,0.170764946,pos,ns,0.050266125,Mecom,Mecom_fiveUTR,3,30509740,30509789,30509740,30509741,50,+,CGCCCCTCCAACATCTCAGCGCCGCCAAAAAAAGTTTGGAGCGATTTATC,Promoter (<=1kb),3,29965456,30509822,544367,2,Mecom-207,33,Mecom-212;Mecom-213;Mecom-207;Mecom-208;Mecom-211;Mecom-209,Mecom;Mecom;Mecom;Mecom;Mecom;Mecom,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,13,80,14013,ENSMUSG00000027684,conserved gene and region,3,30509690,30509782,93,*,93,8,0.537634409,1.24,0.086021505,0.00000681,CpGisland,TRUE,U3,Pr-B
5807,cg23323432,0.00000617,0.00000252,2.450629271,0.01481294,gain,ns,-0.00000538,0.00000428,-1.257274338,0.209600692,neg,ns,0.000547076,0.001253301,0.436508215,0.6627719,pos,ns,0.178635913,-0.0000357,0.0000431,-0.827660523,0.408499464,neg,ns,0.937068899,Pank1,Pank1_Exon,19,34840881,34840930,34840881,34840882,50,+,CGGATGAAGTGCAGGTTCCCTTTGCGTCCACACATGGTCAGGTTTTTCAG,"Exon (Pank1-201/Pank1, exon 2 of 7)",19,34806940,34879455,72516,2,Pank1-201,38525,Pank1-201;Pank1-202;Pank1-204;Pank1-203,Pank1;Pank1;Pank1;Pank1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,75735,ENSMUSG00000033610,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23460,cg26328207,0.000000568,0.00000191,0.297953156,0.765938507,gain,ns,-0.00000407,0.00000324,-1.257229128,0.209617035,neg,ns,-0.001213826,0.000948371,-1.27990642,0.201535032,neg,ns,0.695649452,0.0000484,0.0000326,1.483144932,0.139051828,pos,ns,0.953081443,Clasp1,Clasp1_threeUTR,1,118510253,118510302,118510253,118510254,50,+,CGATCTCGAAGTGATATTGATGTGAACGCAGCAGCCAGTGCCAAATCCAA,3' UTR,1,118389058,118609432,220375,1,Clasp1-201,121195,Clasp1-201;Clasp1-202;Clasp1-204;Clasp1-218;Clasp1-219;Clasp1-208;Clasp1-216;Clasp1-203;Clasp1-214;Clasp1-217;Clasp1-220;Clasp1-212;Clasp1-206;Clasp1-205;Clasp1-210;Clasp1-224;Clasp1-221;Clasp1-211;Clasp1-230,Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,8,76707,ENSMUSG00000064302,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27494,cg04267424,-0.00000114,0.00000177,-0.643212252,0.520561881,loss,ns,-0.00000379,0.00000302,-1.257163087,0.209640911,neg,ns,-0.000370874,0.000883368,-0.419840724,0.674892636,neg,ns,0.170765311,-0.000033,0.0000304,-1.087329529,0.277735885,neg,ns,0.043756757,Pbx1,Pbx1_fiveUTR,1,168431884,168431933,168431932,168431933,50,-,CCCGGCGCTTAAATCTGTGGCTTAATCCTTTTGCAAATATGCATTGATCG,Promoter (<=1kb),1,168153542,168431897,278356,2,Pbx1-205,0,Pbx1-208;Pbx1-205;Pbx1-206;Pbx1-201;Pbx1-202;Pbx1-204;Pbx1-207,Pbx1;Pbx1;Pbx1;Pbx1;Pbx1;Pbx1;Pbx1,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,84,18514,ENSMUSG00000052534,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
7385,cg13248497,-0.0000105,0.00000618,-1.704285929,0.089329674,loss,ns,-0.0000132,0.0000105,-1.257048621,0.209682299,neg,ns,-0.001932649,0.00307757,-0.627978969,0.530480053,neg,ns,0.275330942,-0.00013192,0.000105837,-1.246444785,0.213542187,neg,ns,0.881392693,Ptchd4,Ptchd4_Exon,17,42502892,42502941,42502940,42502941,50,-,GGTTCAGCAGAAATATTTCAGCAACTATAGCCCTGTGATAGGATTCTACG,"Exon (Ptchd4-201/Ptchd4, exon 4 of 4)",17,42315947,42505077,189131,1,Ptchd4-201,186945,Ptchd4-201;Ptchd4-202,Ptchd4;Ptchd4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,9,627626,ENSMUSG00000042256,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14532,cg03830866,0.0000591,0.00000817,7.232192004,3.74E-12,gain,yes,-0.0000175,0.0000139,-1.257024594,0.209690987,neg,ns,0.006358198,0.004067311,1.563243707,0.119015516,pos,ns,0.924396416,-0.0000849,0.000139874,-0.606979112,0.544309067,neg,ns,0.120004175,Hcrtr2,Hcrtr2_Exon,9,76323348,76323397,76323396,76323397,50,+,ATTCTTTCGGGTGCAGGTATTCCCTCCACAGGTACCGCAGGAATTCCTCG,Promoter (<=1kb),9,76225880,76323611,97732,2,Hcrtr2-201,214,Hcrtr2-201;Hcrtr2-203;Hcrtr2-202,Hcrtr2;Hcrtr2;Hcrtr2,0;0;-26,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,387285,ENSMUSG00000032360,conserved gene and region,9,76323266,76323425,160,*,160,12,0.525,1.104082806,0.075,5.15E-08,CpGisland,TRUE,NA,NRS
8205,cg10294147,-0.0000021,0.00000505,-0.416698157,0.677187584,loss,ns,0.0000108,0.00000857,1.256974781,0.209709001,pos,ns,-0.002043638,0.002511199,-0.813809618,0.41637867,neg,ns,0.380511526,0.000136787,0.0000864,1.583915682,0.1142325,pos,ns,0.910997696,Gm5246,Gm5246_Promoter,19,44849626,44849675,44849674,44849675,50,+,AGAAATTGGTCATTTAATGCTTAAGTGCACGCTAGACAGCCCTGTCATCG,Promoter (1-2kb),19,44851009,44851979,971,1,Gm5246-201,-1334,Gm5246-201,Gm5246,-1334,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,20,383450,NA,mapped to different genes,19,44849655,44849739,85,*,85,9,0.694117647,0.881336406,0.105882353,0.000000223,CpGisland,TRUE,U11,Tr-P
25844,cg11694987,-0.00000531,0.0000145,-0.366060618,0.714569528,loss,ns,-0.000031,0.0000246,-1.256871012,0.20974653,neg,ns,-0.025979384,0.007217852,-3.599323601,0.0003713,neg,ns,3.430275128,0.000487293,0.000248221,1.963141016,0.050523577,pos,ns,0.240748252,Gm42424,Gm42424_Intergenic_upstream,5,139682213,139682262,139682213,139682214,50,+,CGAATTAATTAGATGTGTTAATGAGCTAAAAGCAACCCAAATTAAATTAA,Distal Intergenic,5,139701647,139702022,376,1,Gm42424-201,-19385,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,5,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
12657,cg12288943,-0.000000321,0.0000016,-0.200225147,0.841435788,loss,ns,0.00000342,0.00000272,1.256814091,0.209767117,pos,ns,0.000851218,0.000797729,1.067051327,0.28677894,pos,ns,0.542452745,-0.0000411,0.0000274,-1.497705741,0.135227231,neg,ns,0.970122486,Herc1,Herc1_Exon,9,66418398,66418447,66418446,66418447,50,-,ATCTTTCAGTGTTTCCTCTCAGCCCGTGAAGTAGCTCGTAGCCGAGACCG,"Exon (Herc1-201/Herc1, exon 23 of 78)",9,66350526,66508775,158250,1,Herc1-201,67872,Herc1-201,Herc1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,15,15,235439,ENSMUSG00000038664,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10352,cg09376856,-0.00000295,0.00000367,-0.805784921,0.420984529,loss,ns,0.00000783,0.00000623,1.256748818,0.209790728,pos,ns,0.003872311,0.001824771,2.122080197,0.034623782,pos,ns,1.460625492,-0.0000918,0.0000628,-1.46343304,0.144362117,neg,ns,0.546230572,1700019A02Rik,1700019A02Rik_Intergenic_downstream,1,53157910,53157959,53157958,53157959,50,+,TACTTTCTGCATCTGTTTACTGATAATAAAAGACACAGCTGTTCTAAACG,Downstream (<1kb),1,53158600,53187608,29009,2,1700019A02Rik-202,29649,1700019A02Rik-201;1700019A02Rik-202,1700019A02Rik;1700019A02Rik,29677;29649,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,1,1,69397,ENSMUSG00000060715,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5518,cg19738786,-0.00000274,0.00000285,-0.96141844,0.337091112,loss,ns,-0.00000609,0.00000485,-1.256580839,0.209851499,neg,ns,-0.002298589,0.001420014,-1.618708428,0.106526923,neg,ns,0.972540617,0.0000544,0.0000488,1.114034613,0.266127328,pos,ns,0.946182801,Pbx3,Pbx3_threeUTR,2,34175874,34175923,34175922,34175923,50,-,ATGTGGACTGTACAGTGAATTTCCTCCAAGGCCATCACTGTAGCCTCCCG,3' UTR,2,34171457,34372038,200582,2,Pbx3-202,196115,Pbx3-202;Pbx3-201;Pbx3-210;Pbx3-206;Pbx3-207;Pbx3-209,Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,82,18516,ENSMUSG00000038718,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19218,cg05483041,0.0000359,0.0000123,2.913432913,0.003834653,gain,ns,-0.0000263,0.0000209,-1.256438664,0.209902944,neg,ns,-0.005601661,0.006130239,-0.913775311,0.361545067,neg,ns,0.441837559,0.00043936,0.000210818,2.08406856,0.03797251,pos,ns,0.775129595,Wnt1,Wnt1_Intergenic_downstream,15,98798282,98798331,98798282,98798283,50,+,CGGCATTTGGGGAGTTTAATGAATTGTCCATCACGCCTTTCAGGGCCCGC,Distal Intergenic,15,98789857,98793837,3981,1,Wnt1-201,8425,Wnt1-201,Wnt1,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,12,22408,ENSMUSG00000022997,conserved gene and region,15,98798040,98798354,315,*,315,21,0.666666667,0.6125,0.066666667,1.17E-12,CpGisland,TRUE,U13,Hc-P
12453,cg24618497,-0.0000271,0.00000817,-3.317345396,0.00101688,loss,ns,0.0000174,0.0000139,1.256309766,0.209949592,pos,ns,-0.006871791,0.004065316,-1.690346156,0.091966958,neg,ns,1.036368179,-0.0000213,0.000139806,-0.152112947,0.879196803,neg,ns,0.79142894,Tll1,Tll1_Intergenic_upstream,8,64362562,64362611,64362610,64362611,50,-,ACTTCCGTATAAAAACTTCCAACATGATACAGATAATTCTGAGAAACACG,Distal Intergenic,8,64203529,64206271,2743,2,Tll1-204,-156340,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,21892,ENSMUSG00000053626,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20251,cg08235756,-0.00000723,0.0000113,-0.641244388,0.521837708,loss,ns,-0.0000241,0.0000192,-1.256309335,0.209949748,neg,ns,-0.022990236,0.005610871,-4.097445079,0.0000534,neg,ns,4.272584482,0.000555539,0.000192957,2.879076181,0.004265843,pos,ns,0.261641311,Hoxc10,Hoxc10_Exon,15,102970935,102970984,102970935,102970936,50,+,CGCCGCCTGGAGATTAGCAAGACCATTAACCTTACAGACAGACAAGTCAA,"Exon (Hoxc10-201/Hoxc10, exon 2 of 2)",15,102966796,102971893,5098,1,Hoxc10-201,4139,Hoxc10-201;Hoxc5-202,Hoxc10;Hoxc5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,21,209448,ENSMUSG00000022484,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
1993,cg03644155,0.0000177,0.0000106,1.680642198,0.093839704,gain,ns,0.0000225,0.0000179,1.256221206,0.209981647,pos,ns,0.009364719,0.005255764,1.781799943,0.075760678,pos,ns,1.12055615,-0.000300111,0.000180745,-1.660410549,0.097842983,neg,ns,0.14069467,Ndp,Ndp_fiveUTR,X,16911491,16911540,16911539,16911540,50,-,CTTGCCTTTTATATTTGCAACACACAAAAGTTAGGACTGTTGTTTAAGCG,Promoter (<=1kb),20,16885521,16911774,26254,2,Ndp-201,234,Ndp-201,Ndp,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,5,17986,ENSMUSG00000040138,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17934,cg03665521,-0.00000115,0.00000271,-0.423150126,0.672479134,loss,ns,0.00000579,0.00000461,1.256108901,0.210022301,pos,ns,0.00370795,0.00135114,2.744311287,0.006417215,pos,ns,2.192653408,-0.000135226,0.0000465,-2.910242469,0.00387295,neg,ns,0.93840085,Pcf11,Pcf11_Exon,7,92664070,92664119,92664118,92664119,50,-,TCCAGGGCATAAAGTTTCTTCAAAGGGAATATTTCATCCCATGTAGAACG,"Exon (Pcf11-201/Pcf11, exon 3 of 16)",7,92643543,92669934,26392,2,Pcf11-201,5815,Pcf11-201;Pcf11-203;Pcf11-205,Pcf11;Pcf11;Pcf11,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,8,74737,ENSMUSG00000041328,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24309,cg05200513,-0.000213886,0.0000148,-14.46288205,1.38E-36,loss,yes,0.0000316,0.0000251,1.256098036,0.210026235,pos,ns,0.031783498,0.007360439,4.318152554,0.0000212,pos,ns,4.673617818,-0.001420991,0.000253125,-5.61379408,0.000000044,neg,yes,0.26847741,Pou3f1,Pou3f1_Intron,4,124595060,124595109,124595060,124595061,50,+,CGAATGAGGAGAGCGGGAGTTTGCATAACAGCTCCACCCACCCAACTGAA,"Intron (Gm2164-201/Gm2164-201, intron 1 of 1)",4,124656807,124660655,3849,1,Pou3f1-201,-61698,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,43,85,18991,ENSMUSG00000090125,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
3095,cg20096325,0.0000943,0.00000845,11.16485766,1.49E-24,gain,yes,-0.000018,0.0000144,-1.256050066,0.210043602,neg,ns,0.010942909,0.004205896,2.601802012,0.009718666,pos,ns,2.012393335,-0.000091,0.00014464,-0.629144964,0.529717497,neg,ns,0.093612636,Lhfpl3,Lhfpl3_Exon,5,22746280,22746329,22746280,22746281,50,+,CGGGCCATCGGCGTGCTGTGGGCCATCTTCACCATCTGCTTTGCCATCGT,Promoter (<=1kb),5,22746059,23275597,529539,1,Lhfpl3-202,221,Lhfpl3-202,Lhfpl3,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,11,269629,ENSMUSG00000106379,conserved gene and region,5,22746271,22746758,488,*,488,33,0.610655738,0.733834587,0.067622951,9.76E-20,CpGisland,TRUE,U3,Pr-B
26004,cg08162897,-0.00000891,0.00000563,-1.583927893,0.11422972,loss,ns,-0.000012,0.00000956,-1.25604765,0.210044477,neg,ns,-0.008274835,0.00280031,-2.954970614,0.003366634,neg,ns,2.472804106,0.000100156,0.0000963,1.040015218,0.299143286,pos,ns,0.869380674,Ammecr1,Ammecr1_Exon,X,142912206,142912255,142912254,142912255,50,-,AAATTCATGGCAGAAAAAGTACCTATGCATCCACGTAATCTTTTGTCTCG,"Exon (Ammecr1-201/Ammecr1, exon 2 of 6)",20,142851146,142966728,115583,2,Ammecr1-201,54473,Ammecr1-201,Ammecr1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,8,56068,ENSMUSG00000042225,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26593,cg06145973,-0.0000183,0.00000854,-2.143299133,0.032867115,loss,ns,0.0000182,0.0000145,1.255708509,0.21016729,pos,ns,0.013746615,0.004251236,3.233557,0.001354382,pos,ns,2.86825877,-0.000291709,0.0001462,-1.99527819,0.04688753,neg,ns,0.793822434,Casz1,Casz1_threeUTR,4,148954699,148954748,148954699,148954700,50,+,CGAGCTGAACAGCGTGTGCTCTGATTACTTGAATCTGGTCTCCTCGGCAC,3' UTR,4,148804429,148954889,150461,1,Casz1-202,150270,Casz1-202;Casz1-207,Casz1;Casz1,0;7697,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5347,cg10769266,-0.00000253,0.00000471,-0.536731791,0.591837873,loss,ns,-0.00001,0.00000799,-1.255705777,0.21016828,neg,ns,-0.003113731,0.002341879,-1.329586209,0.184632185,neg,ns,0.73369259,0.000154373,0.0000805,1.916789391,0.056183825,pos,ns,0.868954968,Gm11935,Gm11935_Intergenic_upstream,4,33545610,33545659,33545658,33545659,50,-,TGTTAAATTGCTCACAAACACTTCACTGACCAGCTGTTCCTATTAAGCCG,Distal Intergenic,4,33452491,33452889,399,2,Gm11935-201,-92770,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14263,cg17254774,-0.0000046,0.0000036,-1.276082258,0.202881687,loss,ns,-0.00000769,0.00000612,-1.255676848,0.210178758,neg,ns,-0.003296047,0.0017933,-1.837978639,0.067022304,neg,ns,1.173780646,0.00011587,0.0000617,1.878834236,0.061205294,pos,ns,0.911873665,Chic2,Chic2_Exon,5,75011450,75011499,75011498,75011499,50,+,CACCTTGTGGTATAACCTATTGTTTTCCCATTCTAATAACTTCTCAATCG,"Exon (Chic2-201/Chic2, exon 4 of 6)",5,74997988,75044774,46787,2,Chic2-201,33275,Chic2-201;Chic2-202,Chic2;Chic2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,10,74277,ENSMUSG00000029229,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23411,cg04043112,0.0000394,0.00000963,4.093596199,0.0000542,gain,ns,-0.0000205,0.0000164,-1.25555548,0.210222724,neg,ns,0.017554601,0.004794921,3.661082582,0.000295173,pos,ns,3.529923229,-0.000493459,0.000164897,-2.992529325,0.002989071,neg,ns,0.435331019,Sp4,Sp4_Exon,12,118299246,118299295,118299246,118299247,50,+,CGTTCAGAACTACTGGCTGATGTGCTTGCATACTGGCCAGTATCTGCTGA,"Exon (Sp4-201/Sp4, exon 3 of 6)",12,118234933,118301370,66438,2,Sp4-201,2075,Sp4-201;Sp4-203;Sp4-202,Sp4;Sp4;Sp4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,14,20688,ENSMUSG00000025323,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10660,cg09494436,-0.00000242,0.00000201,-1.204783105,0.229205995,loss,ns,0.00000429,0.00000342,1.255487611,0.210247312,pos,ns,0.001780394,0.001001403,1.777900645,0.076400363,pos,ns,1.116904578,-0.0000798,0.0000344,-2.31861324,0.021066199,neg,ns,0.949276328,Zfp608,Zfp608_threeUTR,18,54888978,54889027,54889026,54889027,50,-,CATTAAGGCATTTCAAATTAACACCATGGAACTGATGTCTGTATAAAGCG,3' UTR,18,54888048,54990166,102119,2,Zfp608-201,101139,Zfp608-201;Zfp608-204;Zfp608-203;Zfp608-202,Zfp608;Zfp608;Zfp608;Zfp608,0;0;0;6535,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,32,269023,ENSMUSG00000052713,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
717,cg05141362,0.0000583,0.0000214,2.725620115,0.006782899,gain,ns,-0.0000456,0.0000364,-1.255475681,0.210251634,neg,ns,0.010632921,0.010649953,0.998400808,0.318863715,pos,ns,0.496394898,-0.000492,0.000366251,-1.343339873,0.180144499,neg,ns,0.707542138,Nipbl,Nipbl_Exon,15,8291458,8291507,8291506,8291507,50,+,CTACTCTTGCAATTTGTGGTCGATCTTTGTACTTTGGACAGCAAATAGCG,"Exon (Nipbl-201/Nipbl, exon 47 of 47)",15,8290617,8444463,153847,2,Nipbl-201,152956,Nipbl-201,Nipbl,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,19,36,71175,ENSMUSG00000022141,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18862,cg18615337,0.00000842,0.00000191,4.415368305,0.0000139,gain,ns,-0.00000407,0.00000324,-1.255466963,0.210254793,neg,ns,0.001837441,0.000948929,1.936331883,0.053735781,pos,ns,1.269736434,-0.0000776,0.0000326,-2.379289752,0.017951006,neg,ns,0.028821532,E130114P18Rik,E130114P18Rik_Intron,4,97775222,97775271,97775270,97775271,50,-,TGTGAAGGGCTTTGGTGCTGAACTTGGATCCAGCCCTTGCCTAGAGGGCG,"Intron (Nfia-208/Nfia, intron 1 of 3)",4,97568133,97778048,209916,2,E130114P18Rik-204,2777,E130114P18Rik-204;E130114P18Rik-205;Nfia-208;Nfia-202;Nfia-203;Nfia-205;Nfia-201;Nfia-204,E130114P18Rik;E130114P18Rik;Nfia;Nfia;Nfia;Nfia;Nfia;Nfia,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,24,319865,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
905,cg02227217,0.000000812,0.00000181,0.44937612,0.653474371,gain,ns,0.00000385,0.00000307,1.255448108,0.210261625,pos,ns,0.002169693,0.000899376,2.412441447,0.01642646,pos,ns,1.784456031,-0.0000451,0.0000309,-1.458749698,0.145646461,neg,ns,0.969964806,Vcpip1,Vcpip1_threeUTR,1,9724335,9724384,9724383,9724384,50,-,ACTTGCTATCATGCACTGAATAACAAGATATAATCTTTGAATTATATACG,3' UTR,1,9718622,9748382,29761,2,Vcpip1-201,23998,Vcpip1-201,Vcpip1,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,2,70675,ENSMUSG00000045210,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4776,cg14720152,-0.00000128,0.00000927,-0.138003251,0.890327444,loss,ns,-0.0000198,0.0000158,-1.255443108,0.210263436,neg,ns,-0.004399673,0.004615436,-0.953251865,0.341205156,neg,ns,0.466984415,0.000561636,0.000158724,3.538432053,0.000464125,pos,ns,0.202386516,Mecom,Mecom_Intron,3,30513676,30513725,30513724,30513725,50,-,ACCCTGGGTAGCCTAGCTAAATTAATAGCTTGTCTAGTGGTTTAAATCCG,"Intron (Mecom-208/Mecom, intron 2 of 8)",3,29977344,30548008,570665,2,Mecom-208,34283,Mecom-212;Mecom-213;Mecom-207;Mecom-208;Mecom-211;Mecom-209,Mecom;Mecom;Mecom;Mecom;Mecom;Mecom,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,80,14013,ENSMUSG00000027684,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
4406,cg02020196,-0.00000122,0.00000487,-0.249500043,0.803139248,loss,ns,-0.0000104,0.00000827,-1.255384018,0.210284847,neg,ns,0.01169012,0.00242378,4.823094566,0.00000222,pos,ns,5.653711242,-0.00041648,0.0000834,-4.996542816,0.000000977,neg,yes,0.871578842,Hnrnpl,Hnrnpl_threeUTR,7,28817348,28817397,28817396,28817397,50,+,GTTTGATGGGACGCCATCTTTCAGAACTGTGCTAACTCACTGTTGAAGCG,3' UTR,7,28808541,28822266,13726,1,Hnrnpl-211,8807,Hnrnpl-211;Hnrnpl-206;Hnrnpl-202;Hnrnpl-204;Hnrnpl-201;Hnrnpl-209;Hnrnpl-212;Hnrnpl-213;Hnrnpl-208;Hnrnpl-207;Hnrnpl-203;Hnrnpl-205;Hnrnpl-210,Hnrnpl;Hnrnpl;Hnrnpl;Hnrnpl;Hnrnpl;Hnrnpl;Hnrnpl;Hnrnpl;Hnrnpl;Hnrnpl;Hnrnpl;Hnrnpl;Hnrnpl,0;8542;0;7830;0;0;6408;0;3970;0;0;0;-3816,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,4,15388,ENSMUSG00000015165,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10927,cg23201043,-0.00000229,0.00000137,-1.670968638,0.095737051,loss,ns,0.00000292,0.00000233,1.255015802,0.210418302,pos,ns,0.005332581,0.00068264,7.811704673,8.81E-14,pos,yes,13.05496013,-0.000151237,0.0000235,-6.442224856,4.49E-10,neg,yes,0.96526158,Tcf7l2,Tcf7l2_Intron,19,55888906,55888955,55888954,55888955,50,+,ATTTGAAATGCTAACACAATGAATATTTTCTCATTGGTCTGTGTCCCTCG,"Intron (Tcf7l2-213/Tcf7l2, intron 4 of 13)",19,55741820,55933229,191410,1,Tcf7l2-213,147086,Tcf7l2-213;Tcf7l2-201;Tcf7l2-208;Tcf7l2-211;Tcf7l2-212;Tcf7l2-206;Tcf7l2-204;Tcf7l2-205;Tcf7l2-222;Tcf7l2-215;Tcf7l2-214;Tcf7l2-207;Tcf7l2-202;Tcf7l2-209;Tcf7l2-210;Tcf7l2-217;Tcf7l2-220,Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,55,88,21416,ENSMUSG00000024985,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12289,cg10239253,0.0000687,0.0000148,4.643904416,0.00000506,gain,ns,-0.0000315,0.0000251,-1.254375074,0.210650674,neg,ns,0.031981135,0.007358577,4.346102895,0.0000188,pos,ns,4.725605014,-0.000917767,0.000253061,-3.626665905,0.000335565,neg,ns,0.429341838,Wdr7,Wdr7_Intron,18,63852688,63852737,63852688,63852689,50,-,CGTGGTGATTCAAAATTAACTTAAAAGTCTTGTTTGCTGACAGCTTAAGG,"Intron (Wdr7-201/Wdr7, intron 20 of 27)",18,63708685,63989776,281092,1,Wdr7-201,144003,Wdr7-201;Wdr7-205;Wdr7-204;Wdr7-202,Wdr7;Wdr7;Wdr7;Wdr7,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,11,104082,ENSMUSG00000040560,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22367,cg02174576,0.00007,0.00000613,11.41560738,1.97E-25,gain,yes,-0.0000131,0.0000104,-1.254300454,0.210677748,neg,ns,-0.00796748,0.003052023,-2.610556943,0.00947869,neg,ns,2.023251681,0.000429404,0.000104959,4.091162645,0.0000548,pos,ns,0.930156117,Fmn1,Fmn1_Intron,2,113674623,113674672,113674671,113674672,50,-,CAAATATCCACTTTAATTCAGGTATAAAATGTTCACTCCATGTCATGGCG,"Intron (Fmn1-202/Fmn1, intron 15 of 18)",2,113327736,113716767,389032,1,Fmn1-202,346887,Fmn1-202;Fmn1-203;Fmn1-210;Fmn1-211;Fmn1-201,Fmn1;Fmn1;Fmn1;Fmn1;Fmn1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,4,14260,ENSMUSG00000044042,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2305,cg16434636,-0.00000786,0.0000017,-4.636043397,0.00000524,loss,ns,0.00000361,0.00000288,1.254240811,0.21069939,pos,ns,0.001497767,0.000844125,1.774342778,0.076987892,pos,ns,1.113577574,-0.000019,0.000029,-0.655088243,0.512896736,neg,ns,0.059994983,Irf2bp1,Irf2bp1_Exon,7,19004458,19004507,19004458,19004459,50,-,CGCCGCCAGTGGTGCTACCTGTGCGACCTGCCCAAGATGCCGTGGGCCAT,Promoter (<=1kb),7,19004044,19006777,2734,1,Irf2bp1-201,414,Irf2bp1-201;Mypop-201;Mypop-203,Irf2bp1;Mypop;Mypop,0;13213;13139,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,4,272359,ENSMUSG00000044030,conserved gene and region,7,19004289,19004888,600,*,600,71,0.735,0.877192983,0.118333333,9.63E-60,CpGisland,TRUE,U1,Pr-A
8591,cg25805807,0.00000136,0.00000137,0.996720768,0.319677427,gain,ns,-0.00000291,0.00000232,-1.254223851,0.210705545,neg,ns,0.000335915,0.000680878,0.49335538,0.622110821,pos,ns,0.206132245,-0.00000883,0.0000234,-0.376979947,0.70644643,neg,ns,0.961101942,Btrc,Btrc_fiveUTR,19,45423128,45423177,45423176,45423177,50,+,TGCAGTGCTCTATGCCCAGGTCTCTGTGGCTGGGCTGCTCCAGCCTGGCG,5' UTR,19,45363734,45507736,144003,1,Btrc-204,59394,Btrc-204;Btrc-201;Btrc-210;Btrc-206;Btrc-202;Btrc-207;Btrc-203,Btrc;Btrc;Btrc;Btrc;Btrc;Btrc;Btrc,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,98,12234,ENSMUSG00000025217,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16798,cg23465841,-0.00000296,0.00000838,-0.353708603,0.72379771,loss,ns,-0.0000179,0.0000142,-1.254007188,0.210784178,neg,ns,-0.006988413,0.004170977,-1.675485992,0.094847223,neg,ns,1.022975382,0.0000775,0.00014344,0.54044982,0.589274932,pos,ns,0.888209575,Pde6d,Pde6d_threeUTR,1,86546650,86546699,86546698,86546699,50,+,AGAATACCTTCTAGGCATTGCCCTTTGAAGTAAACTTTTTGTTCCAGGCG,3' UTR,1,86542994,86582547,39554,2,Pde6d-201,35848,Pde6d-201;Pde6d-204;Pde6d-202;Pde6d-205;Pde6d-203,Pde6d;Pde6d;Pde6d;Pde6d;Pde6d,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,2,18582,ENSMUSG00000026239,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7922,cg05461730,0.00000571,0.00000246,2.325697558,0.020679593,gain,ns,0.00000523,0.00000417,1.253834563,0.210846844,pos,ns,0.002658091,0.00122209,2.175036498,0.030382953,pos,ns,1.517370018,-0.0000395,0.000042,-0.94102557,0.347424457,neg,ns,0.937830529,Gtdc1,Gtdc1_Intron,2,44632882,44632931,44632930,44632931,50,-,ATATTTTTTTTATGCTGTGCTCTCTGTACAACAAATAGCTATCAGACGCG,"Intron (Gtdc1-203/Gtdc1, intron 6 of 10)",2,44564412,44861622,297211,2,Gtdc1-203,228691,Gtdc1-203;Gtdc1-201;Gtdc1-205;Gtdc1-210;Gtdc1-204;Gtdc1-211,Gtdc1;Gtdc1;Gtdc1;Gtdc1;Gtdc1;Gtdc1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,43,227835,ENSMUSG00000036890,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10393,cg11765970,0.000000897,0.00000153,0.585294031,0.558775828,gain,ns,-0.00000326,0.0000026,-1.253808629,0.21085626,neg,ns,-0.0000635,0.000762478,-0.083332923,0.933640607,neg,ns,0.029820268,-0.0000286,0.0000262,-1.090724153,0.276241331,neg,ns,0.044496178,Ext1,Ext1_Exon,15,53345012,53345061,53345012,53345013,50,+,CGTAGACTTTGAAGCCGTTTTTCTTGCAAAGGGTGAAATCGAAGCAGGAC,"Exon (Ext1-201/Ext1, exon 1 of 11)",15,53064038,53346159,282122,2,Ext1-201,1098,Ext1-201;Ext1-203,Ext1;Ext1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,16,14042,ENSMUSG00000061731,conserved gene and region,15,53344911,53345348,438,*,438,28,0.552511416,0.841325376,0.063926941,3.40E-16,CpGisland,TRUE,NA,NRS
3444,cg12980091,0.0000527,0.0000114,4.611053079,0.00000587,gain,ns,-0.0000244,0.0000194,-1.253803422,0.210858151,neg,ns,0.018910995,0.005692738,3.321950547,0.001000817,pos,ns,2.999645205,-0.000500365,0.000195773,-2.555847154,0.011069777,neg,ns,0.181588414,Bcl11a,Bcl11a_Exon,11,24086153,24086202,24086153,24086154,50,-,CGTGGTGGGATGACACCATGACCTTGACTTTAAGATGCCATTTTCGACTG,"Exon (Bcl11a-205/Bcl11a, exon 2 of 2)",11,24078056,24173194,95139,1,Bcl11a-201,8097,Bcl11a-201;Bcl11a-203;Bcl11a-205;Bcl11a-202;Bcl11a-204,Bcl11a;Bcl11a;Bcl11a;Bcl11a;Bcl11a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,51,98,14025,ENSMUSG00000000861,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6959,cg08231463,-0.0000522,0.00000897,-5.822771518,1.45E-08,loss,yes,0.0000191,0.0000152,1.25376066,0.210873677,pos,ns,0.00115263,0.004462781,0.258276295,0.796365066,pos,ns,0.098887799,-0.0000204,0.000153475,-0.132911344,0.894349728,neg,ns,0.869746595,9330182O14Rik,9330182O14Rik_Intergenic_downstream,15,40169160,40169209,40169208,40169209,50,-,GTAATCTTTATAGCAATATAAAAATGCCATTTTACCCTTAGATCTTACCG,Distal Intergenic,15,40142188,40148689,6502,1,9330182O14Rik-201,27021,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,6,328531,ENSMUSG00000094112,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27235,cg01399119,-0.0000218,0.000014,-1.56206783,0.119292258,loss,ns,0.0000297,0.0000237,1.253691567,0.210898765,pos,ns,0.01152093,0.006950913,1.657470094,0.098436065,pos,ns,1.006845755,-0.000076,0.000239041,-0.317825243,0.750831482,neg,ns,0.824583954,Prkaca-ps1,Prkaca-ps1_Intergenic_downstream,X,161408256,161408305,161408304,161408305,50,+,CAGCTGCCTGAACAGCAGATGTAACTTTCATAATCATTTCCTCTTCATCG,Distal Intergenic,20,161485567,161486485,919,2,Prkaca-ps1-201,78180,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,100418072,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27671,cg20626434,-0.0000154,0.00000541,-2.84918873,0.004676393,loss,ns,-0.0000115,0.00000918,-1.253610531,0.210928193,neg,ns,-0.005212834,0.002690361,-1.937596238,0.053580529,neg,ns,1.270993003,0.000259751,0.0000925,2.807469267,0.005309656,pos,ns,0.894134646,Sdccag8,Sdccag8_Intron,1,176946779,176946828,176946827,176946828,50,-,TTCAGTGGCTCCAAATTGATATGTTCCTTTATTTAATCTTTGCAGCTTCG,"Intron (Sdccag8-204/Sdccag8, intron 15 of 16)",1,176814660,176956360,141701,1,Sdccag8-204,132119,Sdccag8-204;Sdccag8-201;Sdccag8-203,Sdccag8;Sdccag8;Sdccag8,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,20,76816,ENSMUSG00000026504,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8457,cg00332561,0.00000182,0.0000024,0.758771751,0.448565621,gain,ns,-0.00000512,0.00000408,-1.25355951,0.210946722,neg,ns,0.002093263,0.001196179,1.749957875,0.08111498,pos,ns,1.090898934,-0.0000716,0.0000411,-1.739984064,0.082854228,neg,ns,0.929933528,Zeb2,Zeb2_Intergenic_upstream,2,45170586,45170635,45170634,45170635,50,+,ATACCTGTACACCTGTTTTGTTTTGTCACAGCTAAGACTTTCTTTTGGCG,Distal Intergenic,2,45116441,45117395,955,2,Zeb2-230,-53191,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,9,158,24136,ENSMUSG00000026872,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6205,cg00127523,0.00000359,0.00000513,0.698661412,0.485287453,gain,ns,-0.0000109,0.00000872,-1.253379198,0.211012216,neg,ns,-0.003539257,0.002555381,-1.385021325,0.16704183,neg,ns,0.777174761,-0.0000562,0.0000879,-0.639927064,0.522692672,neg,ns,0.844415965,Arid5a,Arid5a_Exon,1,36317238,36317287,36317286,36317287,50,-,AGCAGGCCTTCCTGGTCAGCCTCTACAAGTTCATGAAGGAGCGACACACG,"Exon (Arid5a-207/Arid5a, exon 3 of 7)",1,36307733,36319203,11471,1,Arid5a-207,9505,Arid5a-207;Arid5a-211;Arid5a-214;Arid5a-212;Arid5a-206;Arid5a-201;Arid5a-205;Arid5a-203;Arid5a-204;Arid5a-208;Arid5a-215;Arid5a-202;Arid5a-209;Arid5a-213;Arid5a-210,Arid5a;Arid5a;Arid5a;Arid5a;Arid5a;Arid5a;Arid5a;Arid5a;Arid5a;Arid5a;Arid5a;Arid5a;Arid5a;Arid5a;Arid5a,0;0;0;0;0;0;0;0;0;0;9480;0;9459;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,214855,ENSMUSG00000037447,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11748,cg00345983,-0.0000501,0.00000856,-5.858072643,0.000000012,loss,yes,0.0000182,0.0000145,1.25313309,0.211101632,pos,ns,-0.004843001,0.004260569,-1.136702847,0.256540437,neg,ns,0.59084417,0.0000919,0.000146521,0.627133303,0.531033466,pos,ns,0.859088281,Abi2,Abi2_Exon,1,60447261,60447310,60447261,60447262,50,+,CGGCACTCCCCCTATCGCACACTGGAGCCAGTGCGTCCTCCAGTGGTACC,"Exon (Abi2-201/Abi2, exon 5 of 9)",1,60409619,60481158,71540,1,Abi2-201,37642,Abi2-201;Abi2-206;Abi2-207;Abi2-210;Abi2-212;Abi2-208;Abi2-205;Abi2-202;Abi2-204;Abi2-203;Abi2-211,Abi2;Abi2;Abi2;Abi2;Abi2;Abi2;Abi2;Abi2;Abi2;Abi2;Abi2,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,9,329165,ENSMUSG00000026782,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5451,cg23194611,0.00000329,0.00000481,0.684264111,0.494319614,gain,ns,0.0000102,0.00000818,1.253101032,0.211113282,pos,ns,0.007221437,0.002395948,3.014020719,0.002790896,pos,ns,2.554256301,0.0000585,0.0000824,0.709531461,0.478528054,pos,ns,0.071292673,Twist1,Twist1_Intergenic_downstream,12,33968039,33968088,33968039,33968040,50,+,CGCTTGTCTGATTTGAATGCTTTTCAGGATGATTTATGGCAAAAGGCTCA,Distal Intergenic,12,33957671,33959829,2159,1,Twist1-201,10368,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,7,22160,ENSMUSG00000035799,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
15547,cg12876617,0.000139311,0.0000208,6.685478324,1.07E-10,gain,yes,-0.0000444,0.0000354,-1.25305013,0.211131779,neg,ns,0.071427519,0.010371232,6.887081574,3.18E-11,pos,yes,10.49809555,-0.00039619,0.000356666,-1.110814807,0.267508896,neg,ns,0.511223293,Polr3g,Polr3g_Intron,13,81693944,81693993,81693944,81693945,50,-,CGAATTTCTCATGTTTTAATGATGTTGTTTTGAGAACTCAAAGATGATAT,"Intron (Polr3g-201/Polr3g, intron 3 of 7)",13,81673843,81711013,37171,2,Polr3g-201,17020,Polr3g-201;Polr3g-203;Polr3g-204,Polr3g;Polr3g;Polr3g,0;0;16952,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,67486,ENSMUSG00000035834,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25878,cg19124333,0.0000143,0.0000159,0.895769641,0.371070838,gain,ns,-0.0000339,0.0000271,-1.25300074,0.211149729,neg,ns,-0.017807445,0.007928971,-2.24587088,0.025416411,neg,ns,1.594885783,0.000312694,0.000272677,1.146758758,0.252365672,pos,ns,0.694750935,Igsf21,Igsf21_Intron,4,140185104,140185153,140185152,140185153,50,-,GAGGCTGCCTGAAAAGTCATTTTTCAGCATTTGACACAAAGTCTCTTTCG,"Intron (Igsf21-201/Igsf21, intron 1 of 9)",4,140026846,140246784,219939,2,Igsf21-201,61631,Igsf21-201,Igsf21,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,3,230868,ENSMUSG00000040972,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6744,cg23739193,-0.0000202,0.00000968,-2.086609734,0.037740307,loss,ns,-0.0000206,0.0000164,-1.252810315,0.211218945,neg,ns,-0.005033662,0.004818455,-1.044663057,0.296992637,neg,ns,0.527254317,-0.000242388,0.000165706,-1.46275635,0.144547149,neg,ns,0.858431363,Gm12129,Gm12129_Intergenic_downstream,11,38274022,38274071,38274070,38274071,50,-,TCATTTCCTCCCATCTCAGAATTTGATGAAATCTATTTCTTAGTTCCTCG,Distal Intergenic,11,38219069,38220215,1147,1,Gm12129-201,55002,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,11,276941,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16104,cg01333192,-0.00000714,0.00000599,-1.191748727,0.234271339,loss,ns,0.0000127,0.0000102,1.252798288,0.211223317,pos,ns,0.001048745,0.002979822,0.351948945,0.725115675,pos,ns,0.139592706,-0.0000333,0.000102476,-0.32489673,0.745478377,neg,ns,0.600693398,Cyp26b1,Cyp26b1_Intergenic_downstream,6,84410308,84410357,84410356,84410357,50,+,AAGTATATGTGACCTAAAAAGGCATTGCTCATTCTGACACATATACGACG,Distal Intergenic,6,84571414,84587680,16267,2,Cyp26b1-205,177323,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,9,232174,ENSMUSG00000063415,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12962,cg06832823,-0.00000338,0.00000489,-0.69113052,0.490000732,loss,ns,-0.0000104,0.0000083,-1.252749757,0.21124096,neg,ns,-0.006365699,0.002431638,-2.617864593,0.009282465,neg,ns,2.032336667,0.00000298,0.0000836,0.03567029,0.971568218,pos,ns,0.923925234,Brinp1,Brinp1_Exon,4,68762643,68762692,68762691,68762692,50,-,TGGCAGATGCGCATGGACATGCCGATCACCATGTGGATGAAGTCCATGCG,"Exon (Brinp1-201/Brinp1, exon 8 of 8)",4,68761514,68954397,192884,2,Brinp1-201,191705,Brinp1-201,Brinp1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,7,56710,ENSMUSG00000028351,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22844,cg16825416,-0.00000291,0.00000154,-1.892206783,0.059395079,loss,ns,0.00000328,0.00000262,1.252745528,0.211242498,pos,ns,0.002192416,0.000766388,2.86071456,0.004513988,pos,ns,2.345439561,-0.0000892,0.0000264,-3.38507724,0.000803137,neg,ns,0.968833183,Meis2,Meis2_Intron,2,116019917,116019966,116019917,116019918,50,-,CGTAGACCCTGATAAAGTTCAAACTGAGAAGAATCTCTCGTGGCGTCCTT,"Intron (Meis2-201/Meis2, intron 7 of 11)",2,115863064,116065047,201984,2,Meis2-201,45081,Meis2-201;Meis2-203;Meis2-205;Meis2-206;Meis2-204;Meis2-202;Meis2-216;Meis2-217;Meis2-213,Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,45,97,17536,ENSMUSG00000027210,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17866,cg18362489,-0.0000011,0.00000187,-0.587640792,0.557201218,loss,ns,0.00000398,0.00000318,1.252436312,0.211354936,pos,ns,0.002515351,0.000930952,2.701912757,0.00727375,pos,ns,2.138241627,-0.0000427,0.000032,-1.33418422,0.183122739,neg,ns,0.054445564,Phf21a,Phf21a_Intron,2,92183373,92183422,92183421,92183422,50,-,TAGTTTCACTCACTTTACATCCGGGTTTTTTCCCTAGGCAATGGGTGCCG,"Intron (Phf21a-201/Phf21a, intron 1 of 15)",2,92093117,92364666,271550,1,Phf21a-201,90256,Phf21a-201;Phf21a-202;Phf21a-204;Phf21a-209;Phf21a-208;Phf21a-207;Phf21a-212;Phf21a-219;Phf21a-206;Phf21a-216;Phf21a-221;Phf21a-220;Phf21a-210;Phf21a-205;Phf21a-211,Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,21,192285,ENSMUSG00000058318,conserved gene but different region,2,92183394,92183855,462,*,462,72,0.787878788,1.004347826,0.155844156,9.30E-71,CpGisland,TRUE,U1,Pr-A
7032,cg15675960,0.0000312,0.00000369,8.459489383,1.08E-15,gain,yes,-0.00000785,0.00000627,-1.252277424,0.211412728,neg,ns,0.003348997,0.001835586,1.824483682,0.069041413,pos,ns,1.160890327,-0.0000831,0.0000631,-1.315764051,0.189225452,neg,ns,0.07215951,Tfap2a,Tfap2a_Intergenic_downstream,13,40709147,40709196,40709147,40709148,50,+,CGAGCAATTATGCCTCCACGCTGAAGGTGGATTAGCGCGCTGGAAAGAAG,Distal Intergenic,13,40716724,40728944,12221,2,Tfap2a-209,19748,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,15,57,21418,ENSMUSG00000021359,mapped to different genes,13,40709088,40709361,274,*,274,22,0.653284672,0.763037975,0.080291971,5.99E-15,CpGisland,TRUE,U13,Hc-P
13582,cg18798831,-0.00000129,0.00000106,-1.213178896,0.225985027,loss,ns,-0.00000226,0.0000018,-1.251925547,0.211540757,neg,ns,0.000923031,0.000528661,1.745977341,0.081805507,pos,ns,1.087217459,-0.0000289,0.0000182,-1.591144045,0.112596361,neg,ns,0.973503551,Hat1,Hat1_Exon,2,71421253,71421302,71421253,71421254,50,+,CGTAGGCTACATGACAGTCTATAATTACTATGTGTACCCAGACAAAACCC,"Exon (Hat1-202/Hat1, exon 7 of 11)",2,71388958,71441622,52665,1,Hat1-202,32295,Hat1-202;Hat1-201;Hat1-204,Hat1;Hat1;Hat1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,11,12,107435,ENSMUSG00000027018,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4910,cg19795032,0.0000059,0.00000283,2.089240774,0.037501174,gain,ns,-0.00000601,0.0000048,-1.25166304,0.211636306,neg,ns,-0.000310309,0.001406079,-0.220691034,0.82547829,neg,ns,0.083294344,-0.00000368,0.0000484,-0.076128582,0.939365908,neg,ns,0.888425248,Nrbp1,Nrbp1_Exon,5,31246294,31246343,31246294,31246295,50,-,CGCTTACGGGCTGCTCTGTTCCCAACAGTCTTTCATAGGATTTTTGCTAA,"Exon (Nrbp1-207/Nrbp1, exon 8 of 19)",5,31240864,31251560,10697,1,Nrbp1-207,5430,Nrbp1-207;Nrbp1-201;Nrbp1-209;Nrbp1-202;Nrbp1-205;Nrbp1-206;Nrbp1-210;Nrbp1-211;Nrbp1-203;Nrbp1-204;Nrbp1-208,Nrbp1;Nrbp1;Nrbp1;Nrbp1;Nrbp1;Nrbp1;Nrbp1;Nrbp1;Nrbp1;Nrbp1;Nrbp1,0;0;5417;5399;5391;0;2866;-1080;-3012;-3248;-4002,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,192292,ENSMUSG00000029148,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6622,cg01950392,-0.000000645,0.00000099,-0.651891434,0.514954231,loss,ns,0.0000021,0.00000168,1.251600874,0.211658938,pos,ns,0.000168513,0.000492628,0.342070564,0.732529577,pos,ns,0.135174835,-0.0000092,0.0000169,-0.543009742,0.587513301,neg,ns,0.969439352,Dennd1a,Dennd1a_Intron,2,37832400,37832449,37832400,37832401,50,-,CGCCCTTGTAATGATCAGCTCTGGTCGATGTGCTTACCGCAGCAGCCCCT,"Intron (Dennd1a-201/Dennd1a, intron 19 of 21)",2,37798991,38287375,488385,2,Dennd1a-201,454926,Dennd1a-201;Dennd1a-206;Dennd1a-207,Dennd1a;Dennd1a;Dennd1a,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,46,227801,ENSMUSG00000035392,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26552,cg21357117,0.0000208,0.00000436,4.769704783,0.00000284,gain,ns,-0.00000927,0.0000074,-1.251599756,0.211659345,neg,ns,-0.001027738,0.002168858,-0.473861278,0.635932393,neg,ns,0.196589053,-0.0000306,0.0000746,-0.409677401,0.682325551,neg,ns,0.803715751,Casz1,Casz1_Intron,4,148916019,148916068,148916019,148916020,50,+,CGGGACGTTTATGTCACTTTAATCTCCTTACAGCGGCTGCTGTGCATTTG,"Intron (Casz1-201/Casz1, intron 4 of 15)",4,148804429,148945129,140701,1,Casz1-201,111590,Casz1-201;Casz1-202;Casz1-206,Casz1;Casz1;Casz1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,94,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24265,cg14874980,0.00000109,0.00000854,0.127916687,0.898297845,gain,ns,0.0000182,0.0000145,1.251530826,0.211684442,pos,ns,0.006832835,0.004251074,1.607319733,0.109002256,pos,ns,0.962564515,-0.000177255,0.000146194,-1.212465905,0.226257292,neg,ns,0.261359715,Pou3f1,Pou3f1_Intron,4,124441970,124442019,124442018,124442019,50,+,GACCCCTGGGGTCAGAAGCCAGGCACTGCATTTATGTGCAAATGGAGGCG,"Intron (1700057H15Rik-201/1700057H15Rik-201, intron 2 of 3)",4,124656807,124660655,3849,1,Pou3f1-201,-214788,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,43,85,18991,ENSMUSG00000090125,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22102,cg23349082,0.0000893,0.00000765,11.68342963,2.23E-26,gain,yes,0.0000163,0.000013,1.251487477,0.211700226,pos,ns,-0.001804789,0.00380558,-0.47424816,0.635656824,neg,ns,0.196777287,0.000519357,0.000130874,3.968389555,0.00009,pos,ns,0.155943315,Lrrc2,Lrrc2_Intron,9,110953720,110953769,110953768,110953769,50,+,CACATGTCCTCCAGATCATATTATCCGCCTACAAATATAGCCTGTTAGCG,"Intron (Lrrc2-201/Lrrc2, intron 1 of 8)",9,110951545,110984066,32522,1,Lrrc2-201,2175,Lrrc2-201;Lrrc2-203,Lrrc2;Lrrc2,0;-30,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,74249,ENSMUSG00000032495,conserved gene but different region,9,110953745,110953870,126,*,126,11,0.571428571,1.076923077,0.087301587,0.000000046,CpGisland,TRUE,NA,NRS
17778,cg07047255,-0.00000533,0.00000349,-1.527338207,0.127696574,loss,ns,-0.00000742,0.00000593,-1.251194628,0.21180688,neg,ns,-0.00148974,0.001738466,-0.85692812,0.39214656,neg,ns,0.40655159,-0.0000115,0.0000598,-0.192427424,0.847533408,neg,ns,0.929828498,Son,Son_threeUTR,16,91662626,91662675,91662674,91662675,50,-,GCATATACGCAAAGACACAGACAATCTTCAGAAATGATCTTTTGCCACCG,3' UTR,16,91647506,91679207,31702,1,Son-203,15120,Son-203;Son-204;Son-202;Son-208;Son-201;Son-205;Son-212;Son-207,Son;Son;Son;Son;Son;Son;Son;Son,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,14,31,20658,ENSMUSG00000022961,conserved gene and region,16,91662523,91662634,112,*,112,9,0.508928571,1.26,0.080357143,0.00000238,CpGisland,TRUE,U10,Tr-S
11778,cg02365546,0.0000258,0.00000734,3.509025704,0.000516367,gain,ns,-0.0000156,0.0000125,-1.251165137,0.211817622,neg,ns,0.007545856,0.003655135,2.064453515,0.039806277,pos,ns,1.400048444,-0.000229266,0.0001257,-1.823920271,0.069126791,neg,ns,0.204102824,Cdh23,Cdh23_Intron,10,60593147,60593196,60593147,60593148,50,-,CGAGGCTGGCTTGGTGAATTAAGTTGCCAATTCTAGCAGGATTTCCCTTT,"Intron (Cdh23-201/Cdh23, intron 5 of 66)",10,60302748,60657333,354586,2,Cdh23-201,64137,Cdh23-201;Cdh23-203;Cdh23-202;Cdh23-204;Cdh23-205;Cdh23-209;Cdh23-210;Cdh23-213,Cdh23;Cdh23;Cdh23;Cdh23;Cdh23;Cdh23;Cdh23;Cdh23,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,14,22295,ENSMUSG00000012819,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26012,cg23294393,-0.0000025,0.00000139,-1.795752213,0.073507665,loss,ns,0.00000296,0.00000237,1.251149912,0.211823168,pos,ns,0.001940392,0.00069382,2.79667696,0.005485677,pos,ns,2.260769762,-0.0000132,0.0000239,-0.553447423,0.580356004,neg,ns,0.967425969,C2cd5,C2cd5_Exon,6,143059155,143059204,143059203,143059204,50,+,AACTATTCCAGTCTAGCAGTTTGTAAGATCTTGTGTTACCCATAATTCCG,"Exon (C2cd5-208/C2cd5, exon 4 of 7)",6,143010920,143100107,89188,2,C2cd5-201,40903,C2cd5-201;C2cd5-203;C2cd5-217;C2cd5-202;C2cd5-213;C2cd5-204;C2cd5-207;C2cd5-205;C2cd5-208,C2cd5;C2cd5;C2cd5;C2cd5;C2cd5;C2cd5;C2cd5;C2cd5;C2cd5,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,8,74741,ENSMUSG00000030279,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13535,cg09057086,0.0000189,0.00000508,3.725516604,0.000231558,gain,ns,0.0000108,0.00000863,1.251065489,0.211853923,pos,ns,-0.000769628,0.002527327,-0.304522528,0.76093416,neg,ns,0.118652919,0.0000643,0.0000869,0.739689545,0.460048164,pos,ns,0.930739049,Gm10172,Gm10172_Intergenic_downstream,7,71190425,71190474,71190473,71190474,50,-,CCATTTAATGGGTCCTGGAAGATTAGGGTAGTGTCAGCCGGAACCGCCCG,Distal Intergenic,7,71332363,71332921,559,2,Gm10172-201,142496,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,31,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20846,cg24727366,0.0000209,0.0000103,2.028208275,0.043393768,gain,ns,-0.0000219,0.0000175,-1.251063482,0.211854655,neg,ns,-0.013820558,0.005138833,-2.689435006,0.007544761,neg,ns,2.122354501,0.000454811,0.000176724,2.573564814,0.010530171,pos,ns,0.184485112,Pax6,Pax6_Promoter,2,105662885,105662934,105662933,105662934,50,-,CAAGATTCGGGGAGATAATTACACTTTCACTGAATTGCCAGGGGTCAGCG,Promoter (6-7kb),2,105668900,105697364,28465,1,Pax6-207,-6015,NA,NA,NA,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,10,78,18508,ENSMUSG00000027168,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
3389,cg03302758,-0.00000755,0.00000211,-3.574719684,0.000406483,loss,ns,0.00000449,0.00000359,1.25102171,0.211869873,pos,ns,0.002058918,0.001050717,1.959535019,0.050945999,pos,ns,1.292889918,-0.0000675,0.0000361,-1.866718564,0.062884787,neg,ns,0.059538332,Bcl6,Bcl6_fiveUTR,16,23988550,23988599,23988550,23988551,50,+,CGGCGGCAGCAACAGCAATAATCACCTGGTGTCCGGCCTTTCCTAGAAAC,Promoter (<=1kb),16,23965052,23988852,23801,2,Bcl6-201,253,Bcl6-201;Gm37419-201,Bcl6;Gm37419,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,18,12053,ENSMUSG00000022508,conserved gene but different region,16,23988496,23988584,89,*,89,14,0.752808989,1.122522523,0.157303371,5.44E-14,CpGisland,TRUE,U1,Pr-A
3365,cg19115817,0.00000209,0.00000266,0.785923188,0.432512794,gain,ns,-0.00000566,0.00000453,-1.25101532,0.211872202,neg,ns,0.001098758,0.001325964,0.828648328,0.407940971,pos,ns,0.389402675,-0.0000486,0.0000456,-1.065253115,0.287590387,neg,ns,0.948923439,Papolg,Papolg_Exon,11,23870788,23870837,23870836,23870837,50,+,TGGGCAAGAGTAATAAATTCATTCCGTTCCAAGTTTCCAACAAGTACACG,"Exon (Papolg-201/Papolg, exon 14 of 22)",11,23862646,23895253,32608,2,Papolg-201,24416,Papolg-201;Papolg-203;Papolg-204;Papolg-202,Papolg;Papolg;Papolg;Papolg,0;-2318;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,9,216578,ENSMUSG00000020273,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20377,cg24340277,0.0000195,0.00000465,4.202476007,0.0000346,gain,ns,-0.00000989,0.0000079,-1.250981733,0.211884439,neg,ns,0.00211406,0.002315227,0.913111085,0.361893712,pos,ns,0.441418963,-0.000124158,0.0000796,-1.559367389,0.119929723,neg,ns,0.07870608,Hoxc5,Hoxc5_Exon,15,103014491,103014540,103014491,103014492,50,-,CGCCACAGATTTACCCGTGGATGACCAAACTGCACATGAGCCACGGTAAA,"Exon (Hoxc5-201/Hoxc5, exon 1 of 2)",15,102967443,103015676,48234,1,Hoxc5-202,47048,Hoxc4-202;Hoxc5-202;Hoxc5-201;Hoxc6-202;Hoxc6-203;Hoxc6-201,Hoxc4;Hoxc5;Hoxc5;Hoxc6;Hoxc6;Hoxc6,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,72,134,15424,ENSMUSG00000022485,mapped to different genes,15,103014167,103014734,568,*,568,41,0.588028169,0.835773758,0.072183099,1.73E-25,CpGisland,TRUE,U13,Hc-P
10907,cg04894536,-0.00000763,0.0000141,-0.542366859,0.587955476,loss,ns,0.0000299,0.0000239,1.250857165,0.211929829,pos,ns,-0.01036419,0.007001484,-1.480284774,0.13981283,neg,ns,0.854452975,0.000146277,0.00024078,0.607511783,0.543956074,pos,ns,0.825530193,Gm20223,Gm20223_Intergenic_upstream,5,55792374,55792423,55792422,55792423,50,-,TGTGGTAAAGTTAATTCAAGCTGAGATACATTAACTGCACCACATTATCG,Distal Intergenic,5,55722617,55723421,805,2,Gm20223-201,-69002,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,100504431,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27169,cg17433611,0.0000478,0.0000126,3.779760163,0.000188264,gain,ns,-0.0000269,0.0000215,-1.250848477,0.211932995,neg,ns,0.010010958,0.006293902,1.590580706,0.112723202,pos,ns,0.947986682,-0.000185269,0.000216447,-0.855958033,0.392682109,neg,ns,0.708279734,Tnr,Tnr_threeUTR,1,159931657,159931706,159931705,159931706,50,-,GTTGCTTTTAGCCTCTGTATAGTTCCTTTTTTAAACACATTTTCTATACG,3' UTR,1,159523769,159931729,407961,1,Tnr-202,407888,Tnr-202,Tnr,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,13,21960,ENSMUSG00000015829,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9462,cg03557306,-0.000016,0.00000719,-2.226797423,0.026678942,loss,ns,0.0000153,0.0000122,1.250556003,0.212039597,pos,ns,-0.006401571,0.003580444,-1.787926508,0.074764482,neg,ns,1.126304671,0.000213262,0.000123131,1.731990102,0.084270047,pos,ns,0.859342364,Gm46453,Gm46453_Intron,14,48813268,48813317,48813268,48813269,50,+,CGCCAAATTTGTTGGGCATCTGTTCCCACTAGAGGCGGCCCCTTGCCAGC,"Intron (Otx2os1-206/Otx2os1-206, intron 2 of 4)",14,48834168,48834534,367,2,Gm46453-201,21217,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,9,108168159,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4934,cg21025566,-0.00000685,0.00000198,-3.454087837,0.000629026,loss,ns,0.00000421,0.00000337,1.250390701,0.212099864,pos,ns,0.00212034,0.000986696,2.148929812,0.032414042,pos,ns,1.489266815,-0.0000549,0.0000339,-1.617237546,0.106844079,neg,ns,0.949938043,Marchf6,Marchf6_Exon,15,31482552,31482601,31482552,31482553,50,-,CGTATAGGAAGCCAAAGCATCAGGAGGACAATGGAGCCAAAGACAATCTG,"Exon (Marchf6-201/Marchf6, exon 17 of 26)",15,31455891,31531053,75163,2,Marchf6-201,48452,Marchf6-201,Marchf6,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,7,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27900,cg18911551,0.0000475,0.00000557,8.526745829,6.73E-16,gain,yes,-0.0000118,0.00000947,-1.250237806,0.212155619,neg,ns,0.003164711,0.002773908,1.140885295,0.254798255,pos,ns,0.593803551,-0.0000366,0.0000954,-0.383736389,0.701436888,neg,ns,0.880311182,Prox1,Prox1_Exon,1,190161489,190161538,190161537,190161538,50,+,AGCTGGCGCAGCTGTTTCTGCATGTCCTCCAGCTGCTGTTTCAGCTGTCG,"Exon (Prox1-202/Prox1, exon 2 of 5)",1,190118035,190170714,52680,2,Prox1-202,9176,Prox1-202;Prox1-201;Prox1-203,Prox1;Prox1;Prox1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,19,59,19130,ENSMUSG00000010175,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19954,cg21812916,-0.000000905,0.00000109,-0.832854393,0.405568037,loss,ns,0.00000231,0.00000185,1.250194139,0.212171544,pos,ns,-0.000218136,0.000540642,-0.403476502,0.686875874,neg,ns,0.163121738,0.00000255,0.0000186,0.13703169,0.8910947,pos,ns,0.971549592,Clpb,Clpb_Intron,7,101746656,101746705,101746704,101746705,50,-,GGGTGCTCCAGGTGTTTGCCCCAGCCCCAGACAGCCAGTGGGAGGTGACG,"Intron (Clpb-201/Clpb, intron 5 of 15)",7,101663633,101790168,126536,1,Clpb-201,83023,Clpb-201;Clpb-202;Clpb-211;Clpb-208;Clpb-207;Clpb-210,Clpb;Clpb;Clpb;Clpb;Clpb;Clpb,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,21,21,20480,ENSMUSG00000001829,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21075,cg08466931,0.000000101,0.00000256,0.039473088,0.968538618,gain,ns,-0.00000543,0.00000434,-1.250067989,0.212217556,neg,ns,0.0000421,0.001272648,0.033048221,0.973657402,pos,ns,0.01159383,-0.0000859,0.0000438,-1.962047793,0.050651329,neg,ns,0.914159235,Scn4a,Scn4a_Exon,11,106347786,106347835,106347786,106347787,50,+,CGCAGCACCCGGAAGGTCCTCAGGGCTGAGATGTTGCCCAAGTCCACAAA,"Exon (Scn4a-201/Scn4a, exon 5 of 24)",11,106318592,106349389,30798,2,Scn4a-201,1554,Scn4a-201;Scn4a-202,Scn4a;Scn4a,0;5453,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,110880,ENSMUSG00000001027,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9386,cg19041804,-0.0000265,0.00000944,-2.806632453,0.005323119,loss,ns,0.00002,0.000016,1.249837626,0.212301599,pos,ns,0.005202912,0.004696681,1.107784862,0.268813514,pos,ns,0.570548901,-0.000365342,0.000161518,-2.261919781,0.024394654,neg,ns,0.733053741,Tmem260,Tmem260_threeUTR,14,48513382,48513431,48513430,48513431,50,+,CTGTCTGGAGTGTCCTTTGTGATGTCATAAGCTGTTAAGGACCAGTGCCG,3' UTR,14,48446124,48520368,74245,1,Tmem260-210,67258,Tmem260-210;Tmem260-202;Tmem260-209;Tmem260-201;Tmem260-204,Tmem260;Tmem260;Tmem260;Tmem260;Tmem260,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,11,218989,ENSMUSG00000036339,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16812,cg20262699,0.000000926,0.00000405,0.228619539,0.819315376,gain,ns,0.0000086,0.00000688,1.249772187,0.212325476,pos,ns,0.002958083,0.002016838,1.466693628,0.143473107,pos,ns,0.843229498,-0.0000994,0.0000694,-1.433151934,0.15282215,neg,ns,0.909409271,Gm8504,Gm8504_Intergenic_upstream,12,86580857,86580906,86580857,86580858,50,-,CGCTCATTAAATATGAAAATTACGCTGGTAAAAGGTATTGGTTTCATTAT,Distal Intergenic,12,86650573,86651662,1090,1,Gm8504-201,-69716,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,8,667191,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14633,cg14601542,-0.00000902,0.00000401,-2.250373669,0.02512605,loss,ns,-0.00000851,0.00000681,-1.249744592,0.212335546,neg,ns,-0.000757201,0.001995703,-0.379415746,0.704638928,neg,ns,0.152033368,-0.0000785,0.0000686,-1.143814713,0.253582952,neg,ns,0.920141697,Ttn,Ttn_Exon,2,76977231,76977280,76977231,76977232,50,+,CGGGCAGAGTGGAAGTGGAAATCACCTGGCCATCCCTAAACCAGCTCACC,"Exon (Ttn-201/Ttn, exon 3 of 191)",2,76703980,76982455,278476,2,Ttn-201,5175,Ttn-201;Ttn-203;Ttn-205;Ttn-204;Ttn-202;Ttn-207;Ttn-215;Ttn-217,Ttn;Ttn;Ttn;Ttn;Ttn;Ttn;Ttn;Ttn,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,12,22138,ENSMUSG00000051747,conserved gene and region,2,76977121,76977267,147,*,147,10,0.571428571,0.835227273,0.068027211,0.00000233,CpGisland,TRUE,U15,NS
20368,cg23563241,0.00000389,0.00000456,0.852122975,0.39480366,gain,ns,0.00000969,0.00000775,1.249520636,0.212417284,pos,ns,0.005158271,0.002271651,2.270714432,0.023850058,pos,ns,1.622510561,-0.000112957,0.0000781,-1.445909401,0.149212833,neg,ns,0.082699702,Hoxc5,Hoxc5_Exon,15,103014119,103014168,103014167,103014168,50,-,GCCCCAATATCCCTGCCTATAACATGCAAACTTGTGGGAACTATGGATCG,"Exon (Hoxc5-201/Hoxc5, exon 1 of 2)",15,102967443,103015676,48234,1,Hoxc5-202,46676,Hoxc4-202;Hoxc5-202;Hoxc5-201;Hoxc6-202;Hoxc6-203;Hoxc6-201,Hoxc4;Hoxc5;Hoxc5;Hoxc6;Hoxc6;Hoxc6,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,72,134,15424,ENSMUSG00000022485,mapped to different genes,15,103014167,103014734,568,*,568,41,0.588028169,0.835773758,0.072183099,1.73E-25,CpGisland,TRUE,U13,Hc-P
22845,cg14872978,0.000017,0.00000487,3.50021982,0.000533053,gain,ns,-0.0000103,0.00000827,-1.249415268,0.212455748,neg,ns,0.008592105,0.002423287,3.545640023,0.000452098,pos,ns,3.344767195,-0.0000265,0.0000833,-0.318549125,0.750282946,neg,ns,0.952666381,Meis2,Meis2_Intron,2,116019907,116019956,116019955,116019956,50,-,ATTGATTAAGCGTAGACCCTGATAAAGTTCAAACTGAGAAGAATCTCTCG,"Intron (Meis2-201/Meis2, intron 7 of 11)",2,115863064,116065047,201984,2,Meis2-201,45091,Meis2-201;Meis2-203;Meis2-205;Meis2-206;Meis2-204;Meis2-202;Meis2-216;Meis2-217;Meis2-213,Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,45,97,17536,ENSMUSG00000027210,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22344,cg18093952,-0.00000205,0.00000121,-1.693574815,0.091350597,loss,ns,0.00000257,0.00000206,1.249362827,0.212474893,pos,ns,0.001409062,0.000603114,2.336309709,0.020112096,pos,ns,1.696542666,-0.0000402,0.0000207,-1.936960426,0.053658554,neg,ns,0.970259447,Brpf1,Brpf1_Exon,6,113319778,113319827,113319778,113319779,50,-,CGGCCCCCCAAAAACCGGGAGAGCCAGATGACCCCCAGCCACGGAGGCAG,"Exon (Brpf1-204/Brpf1, exon 9 of 14)",6,113307137,113324857,17721,1,Brpf1-204,12641,Brpf1-204;Brpf1-209;Brpf1-203;Brpf1-202;Brpf1-201;Brpf1-210;Brpf1-208;Brpf1-205;Brpf1-207;Brpf1-206,Brpf1;Brpf1;Brpf1;Brpf1;Brpf1;Brpf1;Brpf1;Brpf1;Brpf1;Brpf1,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,16,78783,ENSMUSG00000001632,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5586,cg05966565,0.0000253,0.00000848,2.98785511,0.003033846,gain,ns,0.000018,0.0000144,1.248831128,0.212669076,pos,ns,-0.003747432,0.00422113,-0.887779482,0.375347657,neg,ns,0.425566291,0.000274812,0.000145164,1.893112492,0.059274106,pos,ns,0.795347824,Hdac9,Hdac9_Exon,12,34287526,34287575,34287574,34287575,50,+,GAATGAACAAGCTGTATTTCCTCCAGGCTGGCTTTTCGACCTTGAATTCG,"Exon (Hdac9-205/Hdac9, exon 14 of 25)",12,34047580,34528328,480749,2,Hdac9-205,240753,Gm18025-201;Hdac9-205;Hdac9-204;Hdac9-206;Hdac9-210;Hdac9-207,Gm18025;Hdac9;Hdac9;Hdac9;Hdac9;Hdac9,3560;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,31,79221,ENSMUSG00000004698,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19143,cg02764039,-0.000000417,0.00000084,-0.496488314,0.619901795,loss,ns,0.00000178,0.00000143,1.248741713,0.212701745,pos,ns,0.000301523,0.000417992,0.721360556,0.471231397,pos,ns,0.326765781,-0.00000741,0.0000144,-0.515158291,0.606809555,neg,ns,0.983836344,Emsy,Emsy_Exon,7,98646470,98646519,98646470,98646471,50,+,CGTTCATCGTTTACTGCTCTCCGAACTTCAGCACGGTGGCGTTCTGTTGA,"Exon (Emsy-202/Emsy, exon 4 of 20)",7,98587137,98656779,69643,2,Emsy-202,10260,Emsy-202;Emsy-207;Emsy-201;Emsy-211;Emsy-210;Emsy-208;Emsy-209,Emsy;Emsy;Emsy;Emsy;Emsy;Emsy;Emsy,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,13,16,233545,ENSMUSG00000035401,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15529,cg04294034,-0.00000421,0.00000135,-3.114656311,0.002013672,loss,ns,0.00000287,0.0000023,1.248665399,0.212729629,pos,ns,0.000624002,0.000673229,0.926880459,0.354709648,pos,ns,0.450126998,-0.0000257,0.0000232,-1.110852014,0.267492903,neg,ns,0.03677907,Asic2,Asic2_Intron,11,81613327,81613376,81613327,81613328,50,+,CGGGATTGTGTAAAGATGATTACAGCCCTATCATTAATCAGATGCCTGCA,"Intron (Asic2-202/Asic2, intron 1 of 9)",11,80880169,81968457,1088289,2,Asic2-202,355081,Asic2-202,Asic2,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,10,11418,ENSMUSG00000020704,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20651,cg02353301,-0.0000287,0.0000219,-1.308852796,0.191553643,loss,ns,-0.0000465,0.0000373,-1.248613327,0.212748657,neg,ns,0.035863675,0.010915224,3.28565647,0.001134083,pos,ns,2.945355055,-0.002068432,0.000375374,-5.5103271,7.54E-08,neg,yes,0.449266271,Pou4f1,Pou4f1_Intron,14,104326328,104326377,104326376,104326377,50,+,TCATGTGAGACCTTGTTGATTTAGCTGTTAGAAAGCACACATTTCCCTCG,"Intron (D130079A08Rik-202/D130079A08Rik-202, intron 1 of 4)",14,104463973,104465365,1393,2,Pou4f1-202,138988,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,31,18996,ENSMUSG00000048349,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12900,cg26051365,0.0000654,0.00000971,6.735694018,7.93E-11,gain,yes,-0.0000206,0.0000165,-1.248581583,0.212760258,neg,ns,0.015452106,0.004832592,3.19747759,0.001529511,pos,ns,2.815447329,-0.000341004,0.000166192,-2.051862735,0.041022724,neg,ns,0.100227495,Ldlrad4,Ldlrad4_Intron,18,68157580,68157629,68157628,68157629,50,+,ATTTTGGCATTAAACCTAGACATTACCTCATCCTCCTGGGCAGACAGCCG,"Intron (Ldlrad4-201/Ldlrad4, intron 3 of 5)",18,67933257,68255551,322295,1,Ldlrad4-201,224323,Ldlrad4-201,Ldlrad4,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,52662,ENSMUSG00000024544,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4396,cg15084433,-0.00000495,0.0000012,-4.108381327,0.000051,loss,ns,-0.00000256,0.00000205,-1.248542906,0.212774393,neg,ns,0.000118634,0.000599645,0.197839787,0.843300082,pos,ns,0.074017857,-0.00000612,0.0000206,-0.296678803,0.766910415,neg,ns,0.964714338,Lrrc4,Lrrc4_Intron,6,28756832,28756881,28756880,28756881,50,-,TTGAGATTGCTGTTCCCAGATATTGGCACTTGCCTGGTGATGAATGACCG,"Intron (Snd1-203/Snd1, intron 14 of 16)",6,28661831,28830345,168515,2,Lrrc4-202,73464,Lrrc4-202;Snd1-203;Snd1-201;Snd1-206,Lrrc4;Snd1;Snd1;Snd1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,6,192198,ENSMUSG00000049939,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12446,cg24596418,0.000142751,0.0000186,7.689242318,1.98E-13,gain,yes,-0.0000394,0.0000315,-1.248435068,0.212813807,neg,ns,0.007478232,0.00924003,0.809329819,0.418946204,pos,ns,0.377841741,-0.000205783,0.000317764,-0.647597053,0.517724899,neg,ns,0.129266658,Onecut2,Onecut2_Exon,18,64340430,64340479,64340478,64340479,50,+,CTGCGCCATGAACCCGGAGCTGACAATGGAAAGTCTGGGCACTTTGCACG,Promoter (<=1kb),18,64340020,64400987,60968,1,Onecut2-201,410,Onecut2-201,Onecut2,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,19,225631,ENSMUSG00000045991,conserved gene and region,18,64339929,64340544,616,*,616,67,0.73538961,0.829721362,0.108766234,1.14E-53,CpGisland,TRUE,NA,NRS
27772,cg26891414,-0.00000795,0.00000401,-1.98167835,0.048398308,loss,ns,0.00000851,0.00000681,1.24841541,0.212820992,pos,ns,0.005545215,0.001996064,2.778074761,0.005801539,pos,ns,2.236456792,-0.000159614,0.0000686,-2.325224023,0.02070524,neg,ns,0.911310509,Rrp15,Rrp15_Intergenic_upstream,1,186782780,186782829,186782828,186782829,50,+,TCAGGTAATTTAAGTATAGCTCTAGAAAAGGCCACCAGCTAGTTGTCACG,Distal Intergenic,1,186720978,186749358,28381,2,Rrp15-201,-33422,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,11,67223,ENSMUSG00000001305,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5771,cg22155192,-0.00000174,0.0000018,-0.968292283,0.333653247,loss,ns,0.00000382,0.00000306,1.248308234,0.21286017,pos,ns,0.001410714,0.000895707,1.574973697,0.116282472,pos,ns,0.934485743,-0.00000461,0.0000308,-0.149618396,0.881162986,neg,ns,0.061049292,Wapl,Wapl_fiveUTR,14,34673966,34674015,34673966,34673967,50,-,CGTTGAGATGGTTCAGGGCCCTGTTCAAACTCCAGCACTGACCATTCACC,Promoter (<=1kb),14,34673928,34747983,74056,1,Wapl-201,38,Wapl-201;Wapl-205;Wapl-202,Wapl;Wapl;Wapl,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,6,218914,ENSMUSG00000041408,conserved gene and region,14,34673370,34674481,1112,*,1112,125,0.705035971,0.911840146,0.112410072,1.48E-101,CpGisland,TRUE,U1,Pr-A
22427,cg17376374,0.0000156,0.0000205,0.761524184,0.446922968,gain,ns,-0.0000435,0.0000348,-1.248302392,0.212862306,neg,ns,0.020703442,0.010209678,2.027825139,0.04343311,pos,ns,1.362179068,-0.001330059,0.00035111,-3.788155057,0.00018229,neg,ns,0.446502074,Mvk,Mvk_Intergenic_downstream,5,114482776,114482825,114482776,114482777,50,-,CGCCCCAATGAAGATTAGTTGTGTTTGCAAGTGGCTGAGTACACAGTCAA,Distal Intergenic,5,114452420,114460572,8153,1,Mvk-207,30405,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,7,17855,ENSMUSG00000041939,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14446,cg20515845,0.0000151,0.00000447,3.37797384,0.000823409,gain,ns,-0.00000947,0.00000759,-1.248135253,0.212923414,neg,ns,-0.005682403,0.002222727,-2.556500346,0.011049454,neg,ns,1.956659201,0.000206162,0.0000764,2.697058843,0.007378114,pos,ns,0.881110224,Rhpn1,Rhpn1_Intergenic_downstream,15,75726054,75726103,75726102,75726103,50,-,GTCTGCTTGCTGGGTCAATGGCCAAATTTATTGTCTCACAAGATGGGCCG,Distal Intergenic,15,75712588,75713474,887,1,Rhpn1-207,13515,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,14787,ENSMUSG00000022580,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6299,cg20947400,-0.00000308,0.00000285,-1.079909269,0.281022046,loss,ns,0.00000604,0.00000484,1.247967887,0.212984618,pos,ns,0.00399434,0.001418877,2.815143101,0.005187633,pos,ns,2.285030793,-0.00014205,0.0000488,-2.911158589,0.003861917,neg,ns,0.941215444,Tshz3,Tshz3_Intron,7,36742369,36742418,36742369,36742370,50,+,CGCTCCAGTTAAAGATGCATAAAATATCAGCACTTTTTTAATGCTTGTGC,"Intron (Tshz3-201/Tshz3, intron 1 of 1)",7,36698118,36773553,75436,1,Tshz3-201,44251,Tshz3-201,Tshz3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,58,243931,ENSMUSG00000021217,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5517,cg13234003,-0.00000452,0.00000223,-2.026191994,0.043601149,loss,ns,-0.00000472,0.00000379,-1.247883166,0.213015604,neg,ns,-0.001457992,0.00110922,-1.314429852,0.189673263,neg,ns,0.721993884,0.0000459,0.0000381,1.203342827,0.229761828,pos,ns,0.951133361,Pbx3,Pbx3_threeUTR,2,34172066,34172115,34172066,34172067,50,+,CGCATGAGGTAATAAAGCTGTGTTTTGATTGGTGGGATGTATAAATACTC,3' UTR,2,34171457,34372038,200582,2,Pbx3-202,199923,Pbx3-202;Pbx3-201;Pbx3-210;Pbx3-206;Pbx3-207;Pbx3-209,Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,82,18516,ENSMUSG00000038718,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18123,cg16486408,-0.00000381,0.00000685,-0.556297341,0.578408924,loss,ns,-0.0000145,0.0000116,-1.247777425,0.213054283,neg,ns,-0.004524656,0.003410228,-1.326789626,0.185554768,neg,ns,0.731527881,-0.000277154,0.000117277,-2.363228862,0.018733403,neg,ns,0.832939219,Alkbh3,Alkbh3_Exon,2,94001424,94001473,94001424,94001425,50,+,CGTGAGGATTTGGTTCCATAGTGATTCTTGAATAAGTGTAAGGAAGTTCT,"Exon (Alkbh3-202/Alkbh3, exon 7 of 10)",2,93980550,94010807,30258,2,Alkbh3-202,9334,Alkbh3-202;Alkbh3-201;Alkbh3-209;Alkbh3-206;Alkbh3-205;Alkbh3-210;Alkbh3-211,Alkbh3;Alkbh3;Alkbh3;Alkbh3;Alkbh3;Alkbh3;Alkbh3,0;0;0;0;0;9281;9279,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,69113,ENSMUSG00000040174,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11430,cg12396282,0.00000137,0.00000161,0.855528539,0.392919359,gain,ns,0.0000034,0.00000273,1.247730085,0.213071602,pos,ns,0.000884383,0.000799118,1.10669865,0.269282277,pos,ns,0.569792228,-0.0000133,0.0000275,-0.484838544,0.62813329,neg,ns,0.039973775,Fgf9,Fgf9_Intron,14,58076287,58076336,58076335,58076336,50,-,TTTCATCCGGTTGCAGTGAGAAGCGGGCCCCCGGGGTGACAGCAGTGCCG,"Intron (Fgf9-203/Fgf9, intron 1 of 2)",14,58070547,58112720,42174,1,Fgf9-203,5740,Fgf9-203;Fgf9-201;Fgf9-202;Fgf9-204,Fgf9;Fgf9;Fgf9;Fgf9,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,8,14180,ENSMUSG00000021974,conserved gene and region,14,58076294,58076599,306,*,306,33,0.745098039,0.781881533,0.107843137,1.46E-26,CpGisland,TRUE,U3,Pr-B
4654,cg23566144,-0.00000756,0.00000663,-1.14025345,0.255060916,loss,ns,-0.0000141,0.0000113,-1.247604738,0.213117462,neg,ns,0.00207644,0.003301368,0.628963564,0.529836095,pos,ns,0.275858459,-0.000148123,0.000113534,-1.304659472,0.192976528,neg,ns,0.080717196,Hes1,Hes1_Exon,16,30065628,30065677,30065628,30065629,50,+,CGGTGGCTGCTACCCCAGCCAGTGTCAACACGACACCGGATAAACCAAAG,Promoter (<=1kb),16,30065340,30067796,2457,1,Hes1-201,288,Hes1-202;Hes1-201;Hes1-203;Hes1-204,Hes1;Hes1;Hes1;Hes1,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,20,15205,ENSMUSG00000022528,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
78,cg24330736,0.0000149,0.00000196,7.593996194,3.68E-13,gain,yes,-0.00000416,0.00000333,-1.247535549,0.213142778,neg,ns,-0.00093638,0.000976456,-0.958957813,0.338327306,neg,ns,0.47066295,0.0000347,0.0000336,1.032388896,0.302694713,pos,ns,0.051035274,Plag1,Plag1_Intron,4,3937268,3937317,3937316,3937317,50,+,ATTAACTCCTTGGTCCCTGCAAAGTCAAAATGGACTTCAGGGGAAAGGCG,"Intron (Plag1-201/Plag1, intron 1 of 5)",4,3900996,3938382,37387,2,Plag1-201,1065,Chchd7-202;Chchd7-206;Chchd7-213;Chchd7-207;Chchd7-208;Chchd7-201;Chchd7-205;Chchd7-214;Chchd7-203;Chchd7-209;Chchd7-210;Chchd7-211;Chchd7-204;Plag1-201;Plag1-202;Plag1-204;Plag1-203,Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Plag1;Plag1;Plag1;Plag1,-1571;-1571;-1573;-1597;-1597;-1597;-1597;-1597;-1603;-1726;-2105;-2183;-3537;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,22,56711,ENSMUSG00000003282,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
2531,cg09307266,-0.00000901,0.00000216,-4.173199361,0.0000391,loss,ns,-0.00000458,0.00000367,-1.247445693,0.213175661,neg,ns,0.00079037,0.001074602,0.735499901,0.462591194,pos,ns,0.334802638,-0.0000684,0.000037,-1.851593241,0.065035039,neg,ns,0.94212342,Bclaf1,Bclaf1_threeUTR,10,20332419,20332468,20332419,20332420,50,-,CGGCTTATGGTGGATGAGGACAAAAACTTTGGAATAGCAAGCTAACACTG,3' UTR,10,20312469,20342501,30033,1,Bclaf1-202,19950,Bclaf1-202;Bclaf1-204;Bclaf1-201;Bclaf1-208;Bclaf1-203;Bclaf1-210;Bclaf1-207;Bclaf1-209;Bclaf1-206,Bclaf1;Bclaf1;Bclaf1;Bclaf1;Bclaf1;Bclaf1;Bclaf1;Bclaf1;Bclaf1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,TRUE,FALSE,threeUTR,3,7,72567,ENSMUSG00000037608,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27685,cg07928068,0.000025,0.0000049,5.104826463,0.000000579,gain,yes,-0.0000104,0.00000832,-1.247427379,0.213182363,neg,ns,0.000101977,0.002437394,0.041838598,0.966654299,pos,ns,0.014728813,0.000106765,0.0000838,1.273718511,0.203717352,pos,ns,0.615482468,Akt3,Akt3_Intron,1,177150459,177150508,177150507,177150508,50,-,TCTCCCTATCTGGCAGATGGCAAGTCAACAATCGGCATCAACAGCAGCCG,"Intron (Akt3-201/Akt3, intron 1 of 12)",1,177020073,177248805,228733,2,Akt3-201,98297,Akt3-201;Akt3-203;Akt3-202,Akt3;Akt3;Akt3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,14,23797,ENSMUSG00000019699,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13362,cg21989377,0.0000267,0.00000317,8.42403272,1.38E-15,gain,yes,-0.00000672,0.00000539,-1.247327046,0.213219085,neg,ns,0.003963023,0.001577697,2.511904162,0.012516062,pos,ns,1.902532295,-0.0000381,0.0000543,-0.701606584,0.483450921,neg,ns,0.11035549,Trim9,Trim9_Exon,12,70346445,70346494,70346445,70346446,50,+,CGCAGTACATGCTGTGGTTCTCCAGCTCGTGGTCTGTGCAGGTGGAGACC,Promoter (<=1kb),12,70244533,70347350,102818,2,Trim9-202,856,Trim9-202;Trim9-201;Trim9-211;Trim9-209;Trim9-206;Trim9-203;Trim9-205;Trim9-210;Trim9-208,Trim9;Trim9;Trim9;Trim9;Trim9;Trim9;Trim9;Trim9;Trim9,0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,7,94090,ENSMUSG00000021071,conserved gene and region,12,70346427,70346953,527,*,527,46,0.669829222,0.803779841,0.087286528,2.41E-32,CpGisland,TRUE,U3,Pr-B
22526,cg16188043,0.0000549,0.0000119,4.630481849,0.00000537,gain,ns,-0.0000251,0.0000201,-1.247316632,0.213222897,neg,ns,-0.002391138,0.005901055,-0.405205171,0.685606192,neg,ns,0.163925269,-0.0000857,0.000202937,-0.422272698,0.673118701,neg,ns,0.651260864,Foxe3,Foxe3_Promoter,4,114929288,114929337,114929336,114929337,50,+,AAGATGGCCAGTGAAGGCGGCCCCTTTCTCATGGGCCTGGATTCCAGGCG,Promoter (3-4kb),4,114925147,114926013,867,2,Foxe3-201,-3275,Foxe3-201,Foxe3,-3275,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,4,4,30923,ENSMUSG00000044518,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
16606,cg11156581,0.0000461,0.000006,7.679383335,2.11E-13,gain,yes,-0.0000127,0.0000102,-1.247282322,0.213235455,neg,ns,0.00331422,0.002985617,1.110061919,0.267832661,pos,ns,0.572136463,0.0000661,0.000102675,0.644161761,0.519946863,pos,ns,0.151745723,Six3,Six3_Exon,17,85621961,85622010,85621961,85621962,50,+,CGCAGGCCACCGGCCTCACTCCCACACAAGTAGGCAACTGGTTTAAGAAC,"Exon (Six3-202/Six3, exon 2 of 3)",17,85613608,85625222,11615,1,Six3-202,8353,Six3-202;Six3-203;Six3-201,Six3;Six3;Six3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,24,20473,ENSMUSG00000038805,conserved gene and region,17,85621951,85622167,217,*,217,20,0.64516129,0.892269737,0.092165899,7.82E-15,CpGisland,TRUE,U13,Hc-P
2633,cg07969888,0.0000692,0.0000118,5.888812616,1.01E-08,gain,yes,-0.0000249,0.00002,-1.247174213,0.21327503,neg,ns,0.018991069,0.005850623,3.245990943,0.001298468,pos,ns,2.886568763,-0.000503404,0.000201202,-2.501977327,0.01286519,neg,ns,0.459994578,Camk2g,Camk2g_Exon,14,20741398,20741447,20741446,20741447,50,-,GGCTGGGGCTGCATGCCTGCAGAGGGGGCTGTTCTGTCCCGGGAGCTCCG,"Exon (Camk2g-217/Camk2g, exon 18 of 22)",14,20734875,20794051,59177,2,Camk2g-203,52604,Camk2g-203;Camk2g-201;Camk2g-202;Camk2g-205;Camk2g-217;Camk2g-210;Camk2g-209;Camk2g-204;Camk2g-212;Camk2g-211;Camk2g-214,Camk2g;Camk2g;Camk2g;Camk2g;Camk2g;Camk2g;Camk2g;Camk2g;Camk2g;Camk2g;Camk2g,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,15,12325,ENSMUSG00000021820,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16738,cg13613666,-0.00000512,0.00000123,-4.182134069,0.0000376,loss,ns,0.0000026,0.00000208,1.247106784,0.213299716,pos,ns,0.000388611,0.000609879,0.637193117,0.52446935,pos,ns,0.280279887,-0.0000103,0.000021,-0.493311687,0.622141653,neg,ns,0.053202544,Med13,Med13_Exon,11,86357457,86357506,86357505,86357506,50,-,CACCAGGCAGAAGAGGTTACAGTGACAATCTTCCAGGCTGGCCCCGTTCG,Promoter (<=1kb),11,86267033,86357602,90570,2,Med13-201,96,Med13-201,Med13,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,12,327987,ENSMUSG00000034297,conserved gene and region,11,86357501,86357801,301,*,301,49,0.803986711,1.017382907,0.162790698,1.99E-49,CpGisland,TRUE,U1,Pr-A
970,cg19191820,0.000096,0.0000158,6.056562643,4.02E-09,gain,yes,-0.0000336,0.0000269,-1.24710141,0.213301684,neg,ns,0.033433008,0.007886816,4.2391007,0.0000296,pos,ns,4.528039096,-0.001129234,0.000271227,-4.163427201,0.0000407,neg,ns,0.402225516,Qk,Qk_threeUTR,17,10209506,10209555,10209506,10209507,50,-,CGCTGCACTGACGACAGGCAAGCAAAGGCGATTACCAGTTAACTGATCAG,3' UTR,17,10202601,10319380,116780,2,Qk-204,109825,Qk-204;Qk-202;Qk-203;Qk-201;Qk-206;Qk-205,Qk;Qk;Qk;Qk;Qk;Qk,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,12,17,19317,ENSMUSG00000062078,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5020,cg25424883,-0.00000271,0.00000116,-2.330862863,0.020401643,loss,ns,0.00000247,0.00000198,1.2471007,0.213301944,pos,ns,0.001464137,0.000579188,2.527913131,0.011970763,pos,ns,1.921878164,-0.0000335,0.0000199,-1.681837753,0.093607329,neg,ns,0.968066664,Wdr33,Wdr33_threeUTR,18,31835378,31835427,31835426,31835427,50,+,TAACAGTTTCTCACCCACGGATAATAAATTTGCTACATGCTCTGATGACG,3' UTR,18,31804090,31841642,37553,1,Wdr33-202,31288,Wdr33-202;Wdr33-207;Wdr33-201;Wdr33-205,Wdr33;Wdr33;Wdr33;Wdr33,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,6,74320,ENSMUSG00000024400,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18011,cg06256720,0.0000728,0.000029,2.506547484,0.012703395,gain,ns,0.0000615,0.0000493,1.247098378,0.213302794,pos,ns,-0.028368101,0.014453256,-1.962748177,0.050569453,neg,ns,1.296111747,0.001856343,0.000497046,3.734749386,0.00022358,pos,ns,0.318644634,Elk3,Elk3_Intron,10,93309780,93309829,93309780,93309781,50,+,CGGAAGCGCATGGCAATTAGTCTTGCCGTTTCCAGACAAGCCAGAAACTC,"Intron (Elk3-201/Elk3, intron 1 of 4)",10,93247414,93311135,63722,2,Elk3-201,1306,Elk3-201;Elk3-202;Elk3-204;Elk3-203,Elk3;Elk3;Elk3;Elk3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,7,13713,ENSMUSG00000008398,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11500,cg09387107,-0.00000148,0.00000124,-1.201380283,0.230520763,loss,ns,-0.00000262,0.0000021,-1.246750997,0.213430006,neg,ns,-0.00171438,0.000615157,-2.786897947,0.005649724,neg,ns,2.247972775,0.0000207,0.0000212,0.980627258,0.327541265,pos,ns,0.987172484,Nptn,Nptn_Exon,9,58618779,58618828,58618827,58618828,50,-,AACCGGGCAGAGTCTTTCAGACAGCTGTGGGACGGTGCTCGGAAGCGCCG,"Exon (Nptn-212/Nptn, exon 2 of 8)",9,58582240,58651318,69079,1,Nptn-212,36539,Nptn-212;Nptn-201;Nptn-213;Nptn-206;Nptn-203;Nptn-202;Nptn-211;Nptn-207;Nptn-204,Nptn;Nptn;Nptn;Nptn;Nptn;Nptn;Nptn;Nptn;Nptn,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,20,22,20320,ENSMUSG00000032336,conserved gene and region,9,58618678,58618932,255,*,255,20,0.6,0.879917184,0.078431373,1.96E-13,CpGisland,TRUE,NA,NRS
3215,cg09333532,-0.0000232,0.0000164,-1.410099837,0.15951274,loss,ns,-0.0000348,0.0000279,-1.24655703,0.213501061,neg,ns,-0.021510731,0.008175995,-2.630961747,0.008939876,neg,ns,2.048668515,0.00059692,0.000281172,2.122974066,0.034548187,pos,ns,0.269726588,Xpo1,Xpo1_Promoter,11,23257036,23257085,23257084,23257085,50,-,AGGAGTGGAAGTTTCCAGAAATATTTAGTGCAGCAGCATTGAAACGTCCG,Promoter (<=1kb),11,23256041,23297597,41557,1,Xpo1-201,995,Xpo1-201;Xpo1-204;Xpo1-203;Xpo1-206;Xpo1-202;Xpo1-205,Xpo1;Xpo1;Xpo1;Xpo1;Xpo1;Xpo1,0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,7,14,103573,ENSMUSG00000020290,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
24591,cg24719193,0.00000456,0.00000186,2.444817905,0.015049054,gain,ns,0.00000395,0.00000317,1.246553995,0.213502173,pos,ns,0.001477608,0.000927323,1.593411668,0.112086928,pos,ns,0.950445033,-0.0000583,0.0000319,-1.828857645,0.068381553,neg,ns,0.950969245,Sfpq,Sfpq_Intron,4,127032706,127032755,127032754,127032755,50,+,GTAACTGTGAGGAACGTAGTACCGCAAATGGCAATGGACATTAGGACCCG,"Intron (Sfpq-206/Sfpq, intron 7 of 9)",4,127023527,127037013,13487,1,Sfpq-206,9179,Sfpq-201;Sfpq-206;Sfpq-204,Sfpq;Sfpq;Sfpq,0;0;6750,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,12,71514,ENSMUSG00000028820,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1365,cg25420088,0.0000197,0.00000506,3.900344877,0.000117814,gain,ns,0.0000107,0.0000086,1.246485986,0.213527091,pos,ns,0.006321187,0.002518827,2.509575876,0.012597183,pos,ns,1.899726576,-0.0000589,0.0000866,-0.680016559,0.497001476,neg,ns,0.10896587,Sox1,Sox1_Exon,8,12431418,12431467,12431466,12431467,50,-,TATTTTCTCGCCAACAGTCTCCATCACAATCACTTATCTGGAAACCTGCG,"Exon (Sox1ot-201/Sox1ot-201, exon 8 of 9)",8,12395295,12400126,4832,1,Sox1-201,36172,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,15,20664,ENSMUSG00000096014,mapped to different genes,8,12431094,12431559,466,*,466,37,0.603004292,0.882846902,0.079399142,1.38E-24,CpGisland,TRUE,U13,Hc-P
13477,cg05226860,0.0000504,0.0000111,4.556019677,0.00000751,gain,ns,-0.0000234,0.0000188,-1.246379967,0.213565939,neg,ns,0.013021198,0.005506808,2.364563732,0.018667252,pos,ns,1.728919608,-0.000627019,0.000189379,-3.310925917,0.001039672,neg,ns,0.390276706,Kif1c,Kif1c_Exon,11,70702851,70702900,70702851,70702852,50,-,CGTGAGACCAGCCAGGATGCCAAGTGTGTGGTCAGCATGCAGGGCAACAC,"Exon (Kif1c-205/Kif1c, exon 3 of 13)",11,70700548,70707568,7021,1,Kif1c-205,2303,Inca1-201;Inca1-202;Inca1-203;Inca1-205;Inca1-204;Kif1c-205;Kif1c-203;Kif1c-202;Kif1c-201;Kif1c-204,Inca1;Inca1;Inca1;Inca1;Inca1;Kif1c;Kif1c;Kif1c;Kif1c;Kif1c,-2696;-2696;-2696;-2696;-2742;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,16562,ENSMUSG00000020821,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7611,cg00872748,0.0000773,0.000016,4.830676458,0.00000214,gain,ns,-0.0000339,0.0000272,-1.246285413,0.21360059,neg,ns,0.02958027,0.007960082,3.716076205,0.000239992,pos,ns,3.619802845,-0.000889872,0.000273747,-3.250713816,0.001277796,neg,ns,0.384862823,Pdss2,Pdss2_Exon,10,43439805,43439854,43439853,43439854,50,-,GAAAGAATCAAAGCTGGCAAAGGTGTGACTTCAGCTATTGACCTGTGTCG,"Exon (Pdss2-201/Pdss2, exon 8 of 8)",10,43221486,43440602,219117,1,Pdss2-201,218319,Pdss2-201;Pdss2-202;Pdss2-205,Pdss2;Pdss2;Pdss2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,6,71365,ENSMUSG00000038240,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4496,cg21257656,-0.0000284,0.00000705,-4.031961076,0.0000697,loss,ns,-0.0000149,0.000012,-1.246227983,0.213621639,neg,ns,-0.007627196,0.00351049,-2.172686982,0.030561133,neg,ns,1.514830548,0.0000296,0.000120725,0.245223005,0.80644602,pos,ns,0.838926884,Cdkal1,Cdkal1_Intron,13,29195835,29195884,29195883,29195884,50,-,CCCCTCATCTATATTCAAGCCACCACACTTTGTAGGTGTTAATCTCCACG,"Intron (Cdkal1-209/Cdkal1, intron 15 of 16)",13,29191746,29855647,663902,2,Cdkal1-209,659763,Cdkal1-209,Cdkal1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,6,68916,ENSMUSG00000006191,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20755,cg04842881,0.00000378,0.0000069,0.547996474,0.584088693,gain,ns,-0.0000146,0.0000117,-1.246107783,0.213665698,neg,ns,0.003714077,0.003431812,1.082249534,0.279982778,pos,ns,0.552868682,-0.000293693,0.00011802,-2.488508034,0.013352742,neg,ns,0.890230628,Gm5671,Gm5671_Intergenic_upstream,14,105031837,105031886,105031885,105031886,50,-,TAAAAGATAATGGCTTCAGTGAGCTGGCCAACCTTTCTGTGGAGTGATCG,Distal Intergenic,14,105043450,105044354,905,1,Gm5671-201,-11613,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,12,435420,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9980,cg14817764,0.0000025,0.00000676,0.369497377,0.712009299,gain,ns,-0.0000143,0.0000115,-1.246098901,0.213668954,neg,ns,-0.000995389,0.003364311,-0.295867157,0.767529624,neg,ns,0.114904853,-0.000257312,0.000115698,-2.223986338,0.026869544,neg,ns,0.885841269,Hectd1,Hectd1_Exon,12,51769069,51769118,51769117,51769118,50,-,TCCGTTCCGTTTTGGTCGAACCCAAGCTGATGTCGCTGCTACTGGCCACG,"Exon (Hectd1-201/Hectd1, exon 25 of 43)",12,51743722,51829536,85815,2,Hectd1-201,60418,Hectd1-201;Hectd1-202;Hectd1-204,Hectd1;Hectd1;Hectd1,0;0;-3838,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,19,19,207304,ENSMUSG00000035247,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14542,cg17213306,0.000000541,0.00000321,0.168608678,0.866214411,gain,ns,0.00000679,0.00000545,1.246027867,0.213694995,pos,ns,0.003893899,0.00159673,2.438670249,0.015302451,pos,ns,1.815239009,-0.000172501,0.0000549,-3.141437449,0.001843493,neg,ns,0.931826927,Gm7990,Gm7990_Intron,8,76378035,76378084,76378035,76378036,50,-,CGAGTTAAAGACTAAAGAAAGCTGTTCCTCAGTGTTGTATTAAATCATTG,"Intron (Gm45740-201/Gm45740-201, intron 1 of 9)",8,76395132,76395724,593,2,Gm7990-201,17689,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,666226,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23447,cg06313547,-0.000000816,0.000000461,-1.771827119,0.077405544,loss,ns,-0.000000975,0.000000783,-1.245822291,0.213770371,neg,ns,-0.000552151,0.000229286,-2.408133478,0.016617882,neg,ns,1.779424323,0.00000734,0.00000789,0.931004011,0.352575943,pos,ns,0.991871729,Eomes,Eomes_Exon,9,118484316,118484365,118484364,118484365,50,+,CACGGATTCTCCTAGATCCCATCAGATTGTCCCTGGAGGTCGGTACGGCG,"Exon (Eomes-202/Eomes, exon 6 of 6)",9,118478212,118485366,7155,1,Eomes-202,6104,Eomes-202;Eomes-201;Eomes-203,Eomes;Eomes;Eomes,0;0;5455,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,8,13813,ENSMUSG00000032446,conserved gene and region,9,118484282,118484551,270,*,270,14,0.555555556,0.704041721,0.051851852,0.000000295,CpGisland,TRUE,U13,Hc-P
24041,cg18935619,0.000000594,0.00000359,0.165527159,0.868636969,gain,ns,-0.0000076,0.0000061,-1.245777148,0.213786926,neg,ns,-0.000909787,0.001787063,-0.509096016,0.611047089,neg,ns,0.213925321,0.0000215,0.0000615,0.350237305,0.726398461,pos,ns,0.943474389,Clybl,Clybl_Intron,14,122233267,122233316,122233267,122233268,50,-,CGAGCCCAGATGGCGCTTAAATCTGTCACTCTTTAACGACCCTACTGTTT,"Intron (Clybl-201/Clybl, intron 1 of 7)",14,122181704,122402234,220531,1,Clybl-201,51563,Clybl-201,Clybl,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,13,69634,ENSMUSG00000025545,conserved gene and region,14,122233179,122233304,126,*,126,10,0.523809524,1.157024793,0.079365079,0.000000572,CpGisland,TRUE,NA,NRS
9043,cg09681672,0.00000256,0.00000422,0.606865862,0.544384131,gain,ns,-0.00000894,0.00000717,-1.245598205,0.213852556,neg,ns,-0.00101743,0.002101948,-0.484041646,0.62869808,neg,ns,0.201557866,-0.0000965,0.0000723,-1.33497821,0.182863019,neg,ns,0.892465302,Nova1,Nova1_threeUTR,12,46697973,46698022,46698021,46698022,50,+,CCACGAGATACACTATTTGTCAAAACTTACACAGCTACAGAGTATCGACG,3' UTR,12,46694517,46818929,124413,2,Nova1-201,120907,Nova1-201;Nova1-204,Nova1;Nova1,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,10,24,664883,ENSMUSG00000021047,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15952,cg22661055,-0.00000917,0.000004,-2.293562582,0.022484468,loss,ns,0.00000846,0.00000679,1.245364306,0.213938365,pos,ns,-0.000263379,0.001989649,-0.132374833,0.894773698,neg,ns,0.04828679,-0.0000259,0.0000684,-0.378075786,0.705633048,neg,ns,0.885781926,Gm50420,Gm50420_Intergenic_downstream,18,83944750,83944799,83944798,83944799,50,-,ATGCAAGCAGGAATGACAAATGCGGATGGAAACTGGCTTTGACAAAAACG,Distal Intergenic,18,83905796,83905942,147,1,Gm50420-201,39003,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,9,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25470,cg02974898,0.000065,0.0000147,4.416362285,0.0000139,gain,ns,0.0000311,0.000025,1.245168663,0.214010158,pos,ns,0.026512286,0.00732894,3.617478943,0.000347195,pos,ns,3.459427073,-0.000724222,0.000252042,-2.873420688,0.004340916,neg,ns,0.434352814,Ephb2,Ephb2_Intron,4,136776717,136776766,136776765,136776766,50,-,GGGCTGAACTTTTAACCTGTTTTCTCTCATCGGCCTCAGCCAGAGACGCG,"Intron (Ephb2-202/Ephb2, intron 1 of 15)",4,136647539,136835988,188450,2,Ephb2-202,59222,Ephb2-202;Ephb2-201;Ephb2-203;Ephb2-204,Ephb2;Ephb2;Ephb2;Ephb2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,15,13844,ENSMUSG00000028664,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3415,cg03477060,0.000110714,0.0000129,8.55539361,5.50E-16,gain,yes,-0.0000274,0.000022,-1.245084052,0.214041212,neg,ns,0.017914016,0.006440783,2.781341389,0.005744906,pos,ns,2.240717041,-0.000440761,0.000221498,-1.989909901,0.047479051,neg,ns,0.224953178,A830031A19Rik,A830031A19Rik_Intron,11,24063048,24063097,24063048,24063049,50,-,CGAAGGCACCCACTGGGGCTTCTCAAAATCAAATCTAATAGAAAAGGCAG,"Intron (A830031A19Rik-201/A830031A19Rik, intron 1 of 2)",11,24048955,24075054,26100,2,A830031A19Rik-201,11957,A830031A19Rik-201,A830031A19Rik,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,23,268391,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
23196,cg01983245,-0.0000699,0.0000091,-7.678458281,2.12E-13,loss,yes,0.0000193,0.0000155,1.245061046,0.214049656,pos,ns,-0.009523711,0.004531052,-2.101876439,0.036370699,neg,ns,1.439248358,0.000313012,0.000155822,2.00877185,0.045428146,pos,ns,0.737790609,Rnf220,Rnf220_Intron,4,117427616,117427665,117427664,117427665,50,+,TATAATAAGGGGAACATTTTGTAACAACACGGTTCCCCTATTTTATCCCG,"Intron (Rnf220-201/Rnf220, intron 2 of 14)",4,117271463,117497052,225590,2,Rnf220-201,69387,Rnf220-201;Rnf220-207,Rnf220;Rnf220,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19903,cg15146514,-0.0000148,0.00000886,-1.671411071,0.095649605,loss,ns,0.0000187,0.0000151,1.245032173,0.214060254,pos,ns,0.004471992,0.004411105,1.013803168,0.311467288,pos,ns,0.506587558,-0.000189875,0.000151698,-1.251666629,0.211635,neg,ns,0.447094738,Ogt,Ogt_Exon,X,101642982,101643031,101642982,101642983,50,+,CGAAACGTATGCTTTCCTTCCAAGGGTTAGCTGAGTTGGCACATCGAGAA,"Exon (Ogt-202/Ogt, exon 3 of 23)",20,101640060,101682940,42881,1,Ogt-202,2922,Ogt-202;Ogt-206;Ogt-201;Ogt-205;Ogt-204;Ogt-207,Ogt;Ogt;Ogt;Ogt;Ogt;Ogt,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,32,33,108155,ENSMUSG00000034160,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22310,cg21594623,-0.00000369,0.00000105,-3.507687888,0.00051887,loss,ns,-0.00000223,0.00000179,-1.244837075,0.214131877,neg,ns,0.00027452,0.000523718,0.524175377,0.60053114,pos,ns,0.221464468,-0.0000311,0.000018,-1.7278386,0.08501305,neg,ns,0.966709148,Setd5,Setd5_threeUTR,6,113152633,113152682,113152681,113152682,50,+,CATATGGTTGCCAGCTTATTTCTTTCACTTGTTTACTGTAATATCTGGCG,3' UTR,6,113077365,113153435,76071,1,Setd5-201,75268,Setd5-201;Setd5-203;Setd5-202;Setd5-210;Setd5-211,Setd5;Setd5;Setd5;Setd5;Setd5,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,19,72895,ENSMUSG00000034269,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19999,cg02574734,0.00000855,0.0000058,1.473717273,0.141572428,gain,ns,0.0000123,0.00000986,1.244766879,0.214157651,pos,ns,0.005942719,0.00288741,2.058148677,0.040411514,pos,ns,1.393494883,-0.000147971,0.0000993,-1.490177634,0.137194269,neg,ns,0.642013789,Nhlh2,Nhlh2_Intergenic_downstream,3,102025434,102025483,102025434,102025435,50,-,CGGATTGTGGCCACAGGGAGTAATTATTTAGACATTAAAGGCTATTGGAG,Distal Intergenic,3,102010155,102014506,4352,1,Nhlh2-203,15328,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,5,18072,ENSMUSG00000048540,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10842,cg11321057,0.00000795,0.00000495,1.608362892,0.10877364,gain,ns,-0.0000105,0.0000084,-1.244625398,0.214209605,neg,ns,-0.002415352,0.002461389,-0.981296053,0.327211977,neg,ns,0.485170809,0.000078,0.0000846,0.921559571,0.357474985,pos,ns,0.878640284,Ralgapa1,Ralgapa1_Intron,12,55622816,55622865,55622864,55622865,50,+,TTGGTGTCCAGTGAAATAATACTCAAGAGCCAGGTTTTATCAGCTTCACG,"Intron (Ralgapa1-211/Ralgapa1, intron 38 of 39)",12,55602896,55820767,217872,2,Ralgapa1-211,197902,Ralgapa1-211;Ralgapa1-212;Ralgapa1-201;Ralgapa1-202;Ralgapa1-205;Ralgapa1-204;Ralgapa1-203,Ralgapa1;Ralgapa1;Ralgapa1;Ralgapa1;Ralgapa1;Ralgapa1;Ralgapa1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,15,56784,ENSMUSG00000021027,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8348,cg22930218,-0.00000186,0.00000522,-0.355412473,0.722522313,loss,ns,0.000011,0.00000887,1.24460333,0.21421771,pos,ns,0.00671414,0.002599303,2.583053455,0.010250961,pos,ns,1.989235407,-0.000186229,0.0000894,-2.083333045,0.038039946,neg,ns,0.884173876,Zeb2,Zeb2_Intron,2,45032714,45032763,45032762,45032763,50,+,ATAATTAGGTCAGTATTATATGAACATTCCAATGAGCAGTGGTACAAACG,"Intron (Zeb2-212/Zeb2, intron 3 of 10)",2,44983632,45117395,133764,2,Zeb2-212,84632,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-218;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26833,cg10418691,-0.00000406,0.00000602,-0.674800512,0.500305465,loss,ns,0.0000127,0.0000102,1.244254916,0.214345697,pos,ns,-0.001814069,0.002994293,-0.605842222,0.545062849,neg,ns,0.263553418,0.000103931,0.000102973,1.00929573,0.31361996,pos,ns,0.888296733,Rragb,Rragb_Intron,X,153159276,153159325,153159324,153159325,50,-,ATATGGGCCGAATTTCTCTCAAAGCCTTATTCCCATAGAACAGGTAACCG,"Intron (Rragb-201/Rragb, intron 7 of 10)",20,153139981,153171943,31963,1,Rragb-201,19295,Rragb-201,Rragb,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,3,245670,ENSMUSG00000041658,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11544,cg13748008,0.00000345,0.00000571,0.604627115,0.545869066,gain,ns,-0.0000121,0.0000097,-1.244233838,0.214353441,neg,ns,-0.001267393,0.002843055,-0.445785565,0.656063324,neg,ns,0.18305424,-0.00000655,0.0000978,-0.066979501,0.9466412,neg,ns,0.768119561,Pnn,Pnn_Exon,12,59072745,59072794,59072745,59072746,50,-,CGATCAGGCAAAAGATCTTCAAGAAGTGAAAGAGACCGAAAATCAGACAG,"Exon (Pnn-201/Pnn, exon 9 of 9)",12,59066884,59073998,7115,1,Pnn-201,5861,Pnn-201;Pnn-203;Pnn-204;Pnn-202,Pnn;Pnn;Pnn;Pnn,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,18949,ENSMUSG00000020994,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19221,cg05183249,0.0000673,0.0000179,3.769164596,0.000196069,gain,ns,-0.0000377,0.0000303,-1.24416141,0.214380055,neg,ns,-0.009169172,0.008886961,-1.031755603,0.302990887,neg,ns,0.518570433,0.000724282,0.000305622,2.369864442,0.018406592,pos,ns,0.522329479,Wnt1,Wnt1_Intergenic_downstream,15,98798333,98798382,98798333,98798334,50,+,CGTCAGCCTGGATTAATCTTCGGAGCCCTGGTGGGGTAGGAGACACTAAG,Distal Intergenic,15,98789857,98793837,3981,1,Wnt1-201,8476,Wnt1-201,Wnt1,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,12,22408,ENSMUSG00000022997,conserved gene and region,15,98798040,98798354,315,*,315,21,0.666666667,0.6125,0.066666667,1.17E-12,CpGisland,TRUE,U13,Hc-P
27778,cg07333541,-0.0000711,0.0000566,-1.255477402,0.210251011,loss,ns,-0.000119683,0.0000962,-1.243925636,0.214466706,neg,ns,-0.045057113,0.028187499,-1.598478584,0.110955221,neg,ns,0.954852259,0.001270235,0.000969366,1.310377655,0.191038152,pos,ns,0.68809582,Gm3809,Gm3809_Intergenic_upstream,1,186898102,186898151,186898150,186898151,50,+,TGGTTGCAGAAAAGGCCTAGGCTCCCTCCACCTTTAACTTCCTAAAGTCG,Distal Intergenic,1,186960508,186961513,1006,1,Gm3809-201,-62357,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,8,100042375,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25913,cg09847279,-0.0000181,0.00000927,-1.948827003,0.052217934,loss,ns,0.0000196,0.0000157,1.243904183,0.214474592,pos,ns,0.003594512,0.004611493,0.779468068,0.436298696,pos,ns,0.360216085,-0.000251246,0.000158589,-1.584261384,0.114153824,neg,ns,0.664708309,Mid2,Mid2_Exon,X,140678610,140678659,140678658,140678659,50,+,TGTGTATCTGATGACCAATTGATCTGTGCCTTATGCAAACTGGTGGGTCG,"Exon (Mid2-204/Mid2, exon 2 of 2)",20,140664599,140678708,14110,1,Mid2-204,14011,Mid2-204;Mid2-202;Mid2-201;Mid2-203,Mid2;Mid2;Mid2;Mid2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,11,23947,ENSMUSG00000000266,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8300,cg26558914,-0.000034,0.0000106,-3.206629076,0.001483208,loss,ns,0.0000224,0.000018,1.243891395,0.214479292,pos,ns,0.00234924,0.005273525,0.445478098,0.656285215,pos,ns,0.182907379,-0.000163702,0.000181356,-0.902657823,0.367408359,neg,ns,0.717970067,Ebf1,Ebf1_Intron,11,44988134,44988183,44988134,44988135,50,+,CGTAATGACATGGAGGTGAGAGCAATTTTCTGGTCACCGAAATCCAAGCA,"Intron (Ebf1-203/Ebf1, intron 11 of 15)",11,44617317,45004995,387679,1,Ebf1-203,370817,Ebf1-203;Ebf1-202;Ebf1-201,Ebf1;Ebf1;Ebf1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,80,13591,ENSMUSG00000057098,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6964,cg05496676,-0.00000955,0.00000807,-1.183463106,0.237532394,loss,ns,0.0000171,0.0000137,1.24384324,0.214496994,pos,ns,-0.000752992,0.004016857,-0.187458129,0.851424084,neg,ns,0.069854069,0.0000221,0.000138139,0.159854485,0.873099808,pos,ns,0.781361371,Lsamp,Lsamp_Intron,16,40234490,40234539,40234538,40234539,50,-,GCGAGGTTTGTTTCTTGACAAATGTCCCATTTTCACAGGCAGTTGAACCG,"Intron (Lsamp-207/Lsamp, intron 1 of 2)",16,39984361,40979709,995349,1,Lsamp-207,250129,Lsamp-207;Lsamp-206;Lsamp-208;Lsamp-210;Lsamp-209,Lsamp;Lsamp;Lsamp;Lsamp;Lsamp,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,23,268890,ENSMUSG00000061080,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18459,cg21390586,-0.00000353,0.0000024,-1.466578115,0.143504529,loss,ns,-0.00000508,0.00000408,-1.243795433,0.214514569,neg,ns,-0.001709048,0.001196674,-1.428165364,0.154250947,neg,ns,0.811772162,-0.0000392,0.0000412,-0.952324561,0.341674334,neg,ns,0.952427123,Flrt2,Flrt2_Exon,12,95779026,95779075,95779074,95779075,50,+,TTGTCTACTGTAATGAGCGAAGCTTGACCTCAGTGCCTCTTGGGATCCCG,"Exon (Flrt2-201/Flrt2, exon 2 of 2)",12,95692226,95785215,92990,1,Flrt2-201,86800,Flrt2-201;Flrt2-202,Flrt2;Flrt2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,399558,ENSMUSG00000047414,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17514,cg21916159,-0.000011,0.00000392,-2.810841937,0.005255709,loss,ns,0.00000828,0.00000666,1.243411227,0.214655848,pos,ns,-0.000634337,0.001950488,-0.325219588,0.745234267,neg,ns,0.127707184,-0.0000534,0.0000671,-0.795993688,0.426644814,neg,ns,0.899544366,Gm2497,Gm2497_Intergenic_downstream,9,90693125,90693174,90693125,90693126,50,-,CGCAATAAAGCCCATCTGCCACGGTTAATCTGCAGGCAAACCCACACCCA,Distal Intergenic,9,90732924,90733524,601,2,Gm2497-201,40399,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,9,100039925,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25888,cg14382932,0.00000162,0.00000301,0.539881986,0.589666022,gain,ns,0.00000636,0.00000511,1.243390503,0.214663471,pos,ns,0.00046141,0.001497459,0.308128551,0.758191453,pos,ns,0.120221116,-0.0000494,0.0000515,-0.959804262,0.337901729,neg,ns,0.824737974,Frmpd3,Frmpd3_Exon,X,140404547,140404596,140404595,140404596,50,+,ACCACTGTGCTGTCCGAGTTCAGCAAGATCAGCAAGATCCAGCTGTTCCG,"Exon (Frmpd3-203/Frmpd3, exon 12 of 15)",20,140342263,140435467,93205,1,Frmpd3-203,62284,Frmpd3-203,Frmpd3,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,10,245643,ENSMUSG00000042425,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3929,cg19818130,0.000063,0.0000158,3.998390209,0.0000798,gain,ns,-0.0000333,0.0000268,-1.243249952,0.214715172,neg,ns,0.022871708,0.007846929,2.914733602,0.003819139,pos,ns,2.418034513,-0.000734417,0.000269855,-2.721523843,0.006865512,neg,ns,0.355852661,5730522E02Rik,5730522E02Rik_Intron,11,25814689,25814738,25814689,25814690,50,-,CGAGGATTCTGTCAATGCAAGGGGCCATTACTGTACTTTAAAGGCATGAT,"Intron (5730522E02Rik-202/5730522E02Rik, intron 2 of 5)",11,25617668,26210569,592902,2,5730522E02Rik-202,395831,5730522E02Rik-202;5730522E02Rik-201,5730522E02Rik;5730522E02Rik,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,90,70626,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5614,cg27244752,-0.00000141,0.00000102,-1.385521483,0.166889094,loss,ns,0.00000215,0.00000173,1.243180897,0.214740577,pos,ns,0.000429851,0.000505837,0.849780708,0.396102819,pos,ns,0.402192066,-0.0000092,0.0000174,-0.528865969,0.597276885,neg,ns,0.971588316,Pbx3,Pbx3_Intron,2,34356935,34356984,34356983,34356984,50,+,AACACAGCGGCCAATAAGAATTATTTGCCTTATTAAAGCAGCAGAAGACG,"Intron (Pbx3-202/Pbx3, intron 2 of 7)",2,34171457,34372038,200582,2,Pbx3-202,15054,Pbx3-202;Pbx3-201;Pbx3-206;Pbx3-207;Pbx3-209;Pbx3-204;Pbx3-205;Pbx3-203,Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,82,18516,ENSMUSG00000038718,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2922,cg13214778,-0.0000185,0.0000109,-1.704988566,0.089198379,loss,ns,0.000023,0.0000185,1.243143676,0.214754272,pos,ns,0.005579216,0.00541139,1.031013363,0.303338259,pos,ns,0.51807281,-0.000350851,0.000186097,-1.885310999,0.060322894,neg,ns,0.648064096,Ehbp1,Ehbp1_Intron,11,22057474,22057523,22057522,22057523,50,+,AATATCCCAGAAGACTGAACCACTGCAGTGTGTGGAAGCTGCAGATACCG,"Intron (Ehbp1-201/Ehbp1, intron 17 of 23)",11,22005828,22285838,280011,2,Ehbp1-201,228315,Ehbp1-201;Ehbp1-202;Ehbp1-207,Ehbp1;Ehbp1;Ehbp1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,34,45,216565,ENSMUSG00000042302,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22391,cg16972264,-0.00000171,0.00000147,-1.16348846,0.24552613,loss,ns,0.0000031,0.00000249,1.243056064,0.214786508,pos,ns,0.002638399,0.000730074,3.613877195,0.000351857,pos,ns,3.453634373,-0.0000706,0.0000251,-2.810240774,0.005265288,neg,ns,0.967675724,Ubp1,Ubp1_Exon,9,113959427,113959476,113959475,113959476,50,-,TCCAGCAAGCGGACTTTGCCAGCAGACTACGGTGATTCTCTGGCAAAGCG,"Exon (Ubp1-202/Ubp1, exon 9 of 17)",9,113930934,113977199,46266,1,Ubp1-201,28493,Fbxl2-202;Ubp1-201;Ubp1-202;Ubp1-204;Ubp1-203;Ubp1-207;Ubp1-206,Fbxl2;Ubp1;Ubp1;Ubp1;Ubp1;Ubp1;Ubp1,67253;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,22221,ENSMUSG00000009741,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6711,cg17641487,0.0000882,0.0000164,5.372043528,0.000000153,gain,yes,-0.0000347,0.0000279,-1.24302163,0.214799179,neg,ns,0.020712678,0.008172594,2.534406849,0.011755676,pos,ns,1.92975238,-0.000458364,0.000281055,-1.630870439,0.103933165,neg,ns,0.335236575,Dennd1a,Dennd1a_Intron,2,38144579,38144628,38144627,38144628,50,+,AAACTTGAAATCAAGGCCTTCTCTAGGTAGACAGCTAGATGTAGCTACCG,"Intron (Dennd1a-201/Dennd1a, intron 3 of 21)",2,37798991,38287375,488385,2,Dennd1a-201,142747,Dennd1a-201;Dennd1a-207;Dennd1a-210;Dennd1a-204;Dennd1a-202;Dennd1a-209;Dennd1a-208,Dennd1a;Dennd1a;Dennd1a;Dennd1a;Dennd1a;Dennd1a;Dennd1a,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,46,227801,ENSMUSG00000035392,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4725,cg19156866,-0.00000306,0.00000336,-0.912264205,0.362338535,loss,ns,-0.00000709,0.0000057,-1.242925259,0.214834644,neg,ns,0.001198684,0.001670895,0.717389942,0.473673731,pos,ns,0.3245207,-0.0000739,0.0000575,-1.285314335,0.199641866,neg,ns,0.960597083,Mecom,Mecom_Intron,3,30322039,30322088,30322087,30322088,50,+,TAGCCCATTACATTTTATTTGCAGAGTACAGTGTAAAGTCATCAATAACG,"Intron (Mecom-212/Mecom, intron 1 of 15)",3,29951299,30509733,558435,2,Mecom-212,187645,Mecom-212;Mecom-213;Mecom-207;Mecom-208;Mecom-211;Mecom-209,Mecom;Mecom;Mecom;Mecom;Mecom;Mecom,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,80,14013,ENSMUSG00000027684,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1233,cg12390153,0.0000117,0.00000601,1.951320329,0.051919409,gain,ns,0.0000127,0.0000102,1.242900177,0.214843875,pos,ns,0.005120788,0.002989366,1.713001065,0.087712174,pos,ns,1.056940127,-0.0000497,0.000102804,-0.483929527,0.62877756,neg,ns,0.654820568,Bcor,Bcor_Intron,X,12085470,12085519,12085518,12085519,50,+,GGAGGAGGCTAATGCATAATGCACAGCGCCTGGAAGCCCGGCCATTAGCG,"Intron (Bcor-201/Bcor, intron 1 of 13)",20,12036743,12160355,123613,2,Bcor-201,74836,Bcor-202;Bcor-203;Bcor-204;Bcor-206;Bcor-201;Bcor-207;Bcor-205,Bcor;Bcor;Bcor;Bcor;Bcor;Bcor;Bcor,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,56,74,71458,ENSMUSG00000040363,conserved gene and region,X,12085326,12085682,357,*,357,18,0.546218487,0.675994109,0.050420168,5.80E-09,CpGisland,TRUE,U13,Hc-P
24232,cg20312512,-0.000014,0.00000865,-1.614769537,0.107377927,loss,ns,0.0000183,0.0000147,1.242765837,0.214893322,pos,ns,-0.008189356,0.004302748,-1.90328478,0.057929484,neg,ns,1.237100336,0.0000642,0.000147971,0.434180683,0.664459271,pos,ns,0.771915181,Gm12902,Gm12902_Intergenic_downstream,4,124048468,124048517,124048516,124048517,50,+,TAAATCAACGCCTACTTAAGTGAGCCGTAATAAGCATTCTGGGGGCAACG,Distal Intergenic,4,123926234,123926555,322,1,Gm12902-201,122234,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,34,34,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4339,cg22199101,-0.0000683,0.0000238,-2.872690271,0.004350699,loss,ns,0.0000502,0.0000404,1.242723509,0.214908903,pos,ns,-0.008606212,0.011829992,-0.727490978,0.467474307,neg,ns,0.330242254,0.001663549,0.000406832,4.089027452,0.0000553,pos,ns,0.214853735,Fkbp5,Fkbp5_Intron,17,28420336,28420385,28420384,28420385,50,+,GAATGTGGCTGGCACATGAACTCGATGTGCTGACAGCAATTTGTACTCCG,"Intron (Fkbp5-201/Fkbp5, intron 5 of 10)",17,28399094,28486149,87056,2,Fkbp5-201,65764,Fkbp5-201;Fkbp5-202;Fkbp5-206;Fkbp5-209;Fkbp5-214;Fkbp5-212;Fkbp5-211;Fkbp5-203;Fkbp5-208;Fkbp5-205,Fkbp5;Fkbp5;Fkbp5;Fkbp5;Fkbp5;Fkbp5;Fkbp5;Fkbp5;Fkbp5;Fkbp5,0;0;0;0;0;-1832;-1809;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,14229,ENSMUSG00000024222,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
15378,cg19890585,0.0000515,0.0000107,4.797019012,0.00000251,gain,ns,0.0000227,0.0000182,1.242615297,0.214948741,pos,ns,0.008338278,0.005345698,1.55981067,0.119824899,pos,ns,0.921452929,-0.000164014,0.000183838,-0.892166779,0.372995533,neg,ns,0.041682584,Nckap1,Nckap1_Exon,2,80580910,80580959,80580958,80580959,50,-,ATGGTGAGCTTCTCCGCCAGCTTCTGCTGACTGGGCTGCAGCACTGAGCG,Promoter (<=1kb),2,80500512,80581264,80753,2,Nckap1-201,305,Nckap1-201;Nckap1-202,Nckap1;Nckap1,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,7,50884,ENSMUSG00000027002,conserved gene and region,2,80580430,80581665,1236,*,1236,168,0.737055016,1.018781278,0.13592233,2.93E-152,CpGisland,TRUE,U1,Pr-A
21964,cg15314519,0.0000575,0.0000186,3.087455779,0.002201245,gain,ns,-0.0000393,0.0000316,-1.242514561,0.214985831,neg,ns,0.02379439,0.009269435,2.56697298,0.010728122,pos,ns,1.969476312,-0.000783266,0.000318775,-2.457111727,0.014553435,neg,ns,0.38596974,Pde4d,Pde4d_Intron,13,109837608,109837657,109837608,109837609,50,+,CGTGCCAAGAATAATTGGCTTCTGTCTTGCGGAACAGCTCAAATACTATG,"Intron (Pde4d-209/Pde4d, intron 7 of 16)",13,108654177,109951474,1297298,1,Pde4d-209,1183431,Pde4d-209;Pde4d-220;Pde4d-208;Pde4d-218;Pde4d-205;Pde4d-202;Pde4d-213;Pde4d-201,Pde4d;Pde4d;Pde4d;Pde4d;Pde4d;Pde4d;Pde4d;Pde4d,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,7,238871,ENSMUSG00000021699,conserved gene and region,13,109837580,109837638,59,*,59,7,0.508474576,1.912037037,0.118644068,0.00000415,CpGisland,TRUE,NA,NRS
12705,cg16097493,0.00000551,0.00000226,2.438757997,0.015298808,gain,ns,0.00000477,0.00000384,1.24237992,0.215035412,pos,ns,-0.000123963,0.001123867,-0.110300711,0.912242266,neg,ns,0.03988981,0.0000931,0.0000386,2.409023807,0.01657816,pos,ns,0.947737429,Ptprm,Ptprm_Exon,17,66912388,66912437,66912388,66912389,50,+,CGAATGTAAGGTGTTGTAAGCTGAGTCACGATTATCGCAGCTAAGGCAAA,"Exon (Ptprm-201/Ptprm, exon 14 of 33)",17,66666947,67354073,687127,2,Ptprm-201,441636,Ptprm-201;Ptprm-202;Ptprm-203;Ptprm-207,Ptprm;Ptprm;Ptprm;Ptprm,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,5,19274,ENSMUSG00000033278,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7756,cg21614032,-0.00000411,0.00000292,-1.408764197,0.159907112,loss,ns,-0.00000615,0.00000495,-1.242323057,0.215056354,neg,ns,-0.002415475,0.001450909,-1.664801127,0.096962757,neg,ns,1.013395043,0.0000185,0.0000499,0.37005911,0.711591143,pos,ns,0.92705798,Rnf38,Rnf38_Exon,4,44152372,44152421,44152372,44152373,50,-,CGTGCAGGTGTGTTGCATCGTTCCCCTGAGAAGTGATGTTGGCTTGGTCG,"Exon (Rnf38-202/Rnf38, exon 2 of 11)",4,44126210,44167608,41399,2,Rnf38-202,15187,Rnf38-202;Rnf38-203;Rnf38-201;Rnf38-204;Rnf38-208;Rnf38-206;Rnf38-212;Rnf38-210;Rnf38-217;Rnf38-209;Rnf38-205;Rnf38-207;Rnf38-216,Rnf38;Rnf38;Rnf38;Rnf38;Rnf38;Rnf38;Rnf38;Rnf38;Rnf38;Rnf38;Rnf38;Rnf38;Rnf38,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,6,73469,ENSMUSG00000035696,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13492,cg05524292,-0.00000804,0.00000253,-3.175813752,0.001644506,loss,ns,0.00000534,0.0000043,1.242283347,0.21507098,pos,ns,-0.000449775,0.001260451,-0.356836068,0.721457303,neg,ns,0.141789366,-0.0000125,0.0000433,-0.288268061,0.773334196,neg,ns,0.937786777,Dlgap1,Dlgap1_Exon,17,70815234,70815283,70815234,70815235,50,-,CGGGGTTTTGGGACATGCTGCAGTTGTCCATAGAAAATATTAGTATGAAA,"Exon (Dlgap1-207/Dlgap1, exon 13 of 14)",17,69969073,70821413,852341,1,Dlgap1-207,846161,Dlgap1-207;Dlgap1-201;Dlgap1-210;Dlgap1-214;Dlgap1-208;Dlgap1-218;Dlgap1-219;Dlgap1-206;Dlgap1-211;Dlgap1-209;Dlgap1-202;Dlgap1-220,Dlgap1;Dlgap1;Dlgap1;Dlgap1;Dlgap1;Dlgap1;Dlgap1;Dlgap1;Dlgap1;Dlgap1;Dlgap1;Dlgap1,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,224997,ENSMUSG00000003279,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26571,cg16926809,0.0000968,0.0000127,7.601718116,3.50E-13,gain,yes,-0.0000269,0.0000216,-1.242213903,0.215096558,neg,ns,0.010423975,0.006335095,1.645433096,0.100894034,pos,ns,0.996134513,-0.0001121,0.000217863,-0.51454421,0.607238197,neg,ns,0.544565235,Casz1,Casz1_Intron,4,148922163,148922212,148922163,148922164,50,-,CGAGGCTTTCGGCCCCAGAAAGTGCAGATTCAGGTTTTAATACACAAAAT,"Intron (Casz1-201/Casz1, intron 4 of 15)",4,148804429,148945129,140701,1,Casz1-201,117734,Casz1-201;Casz1-202;Casz1-206,Casz1;Casz1;Casz1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,94,124,69743,ENSMUSG00000028977,mapped to different genes,4,148922073,148922173,101,*,101,10,0.673267327,0.956439394,0.099009901,6.91E-08,CpGisland,TRUE,NA,NRS
615,cg01824230,0.0000022,0.00000335,0.657963707,0.511049745,gain,ns,-0.00000707,0.00000569,-1.241956674,0.215191325,neg,ns,-0.004951578,0.001667782,-2.968960529,0.003221173,neg,ns,2.49198593,0.000168194,0.0000574,2.932520815,0.003612661,pos,ns,0.874282558,Mark2,Mark2_Exon,19,7277109,7277158,7277157,7277158,50,-,GCTATTTTGGAGGCAATGTTTTTGAAGGCCATGGAGGTGCCCGATATCCG,"Exon (Mark2-202/Mark2, exon 18 of 18)",19,7275396,7341819,66424,2,Mark2-202,64661,Mark2-202;Mark2-206;Mark2-201;Mark2-221;Mark2-209;Mark2-203;Mark2-211;Mark2-207;Mark2-218;Mark2-215;Mark2-212;Mark2-208;Mark2-219;Mark2-204;Mark2-205;Rcor2-201;Rcor2-202,Mark2;Mark2;Mark2;Mark2;Mark2;Mark2;Mark2;Mark2;Mark2;Mark2;Mark2;Mark2;Mark2;Mark2;Mark2;Rcor2;Rcor2,0;0;0;0;0;0;0;0;0;0;0;0;0;4783;5952;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,10,13728,ENSMUSG00000024969,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
865,cg07105139,-0.00000491,0.00000388,-1.267289791,0.206002854,loss,ns,-0.00000818,0.00000658,-1.241874302,0.215221678,neg,ns,-0.007106026,0.001928745,-3.684273855,0.000270586,neg,ns,3.567694595,0.000164536,0.0000663,2.480590959,0.013646916,pos,ns,0.920141591,Ttc32,Ttc32_Intergenic_downstream,12,9179025,9179074,9179073,9179074,50,-,GGTCATTTTTTACATTTGCTATTGAGAGCAGATGTGACTGATCCCTATCG,Distal Intergenic,12,9030028,9036397,6370,1,Ttc32-202,149046,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,4,75516,ENSMUSG00000066637,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20236,cg15869291,0.000101915,0.0000122,8.384270555,1.82E-15,gain,yes,0.0000256,0.0000207,1.241798323,0.215249678,pos,ns,0.007710465,0.00604989,1.274480136,0.203447817,pos,ns,0.691546965,0.0000196,0.000208055,0.094344355,0.924896567,pos,ns,0.253552917,Hoxc10,Hoxc10_Promoter,15,102964854,102964903,102964902,102964903,50,+,AAATATCAGTTCCCATACTAAATTTTTATCCCTGGCTGATAAATATGACG,Promoter (1-2kb),15,102966796,102971893,5098,1,Hoxc10-201,-1893,Hoxc10-201;Hoxc5-202,Hoxc10;Hoxc5,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,8,21,209448,ENSMUSG00000022484,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
13892,cg07961015,0.0000537,0.0000171,3.149672846,0.001793894,gain,ns,0.000036,0.000029,1.241710139,0.215282179,pos,ns,0.0083507,0.008487879,0.983838204,0.325962295,pos,ns,0.486832633,0.000500816,0.000291897,1.715726997,0.087211151,pos,ns,0.291395629,Irx4,Irx4_Intergenic_downstream,13,73270973,73271022,73271021,73271022,50,-,AAGTGAAATTTTCATTTTGACAGTAAACCCCTCAATTTCTAAAGGCTCCG,Downstream (1-2kb),13,73260497,73269608,9112,1,Irx4-201,10525,Irx4-202;Irx4-201,Irx4;Irx4,0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,6,7,50916,ENSMUSG00000021604,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
22977,cg05781245,0.00000346,0.00000328,1.055380039,0.292073355,gain,ns,-0.00000692,0.00000558,-1.241681383,0.215292779,neg,ns,-0.001944149,0.00163329,-1.190326807,0.234828701,neg,ns,0.629248824,0.00000251,0.0000562,0.044658019,0.964408648,pos,ns,0.918108319,Ube2o,Ube2o_Exon,11,116545075,116545124,116545075,116545076,50,+,CGCAGTTTTTTTCTGGACATTCCCAGGCAATCTTGGCTGGCTCTACCTTG,"Exon (Ube2o-201/Ube2o, exon 8 of 18)",11,116537740,116581447,43708,2,Ube2o-201,36323,Ube2o-202;Ube2o-201;Ube2o-203,Ube2o;Ube2o;Ube2o,-1058;0;3717,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,217342,ENSMUSG00000020802,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12216,cg23785473,0.00000174,0.0000034,0.511971718,0.609035327,gain,ns,0.00000717,0.00000577,1.241610252,0.215318998,pos,ns,0.002343028,0.001690753,1.385789285,0.166807357,pos,ns,0.777784798,-0.000107169,0.0000581,-1.843141008,0.066262942,neg,ns,0.927485062,Iqch,Iqch_Exon,9,63490911,63490960,63490911,63490912,50,+,CGCTTGCAGTAGACAATGATTACCTAGTAATTAGTTTACACAAAGCTTCC,"Exon (Gm16759-204/Gm16759-204, exon 4 of 4)",9,63421455,63602493,181039,2,Iqch-201,111533,Iqch-201;Iqch-203;Iqch-204;Iqch-202;Iqch-206,Iqch;Iqch;Iqch;Iqch;Iqch,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,22,78250,ENSMUSG00000037801,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8060,cg00204390,0.00000272,0.00000268,1.013097973,0.311803429,gain,ns,-0.00000565,0.00000455,-1.241583098,0.215329008,neg,ns,-0.002742902,0.001333823,-2.056422237,0.040578605,neg,ns,1.391702883,0.0000887,0.0000459,1.933521113,0.054082273,pos,ns,0.067828993,Pax5,Pax5_Promoter,4,44710668,44710717,44710716,44710717,50,-,CCGCTCCCCCGCCGAGCTGGGGTAGCTGATCACTGAGCTGAAACTAAACG,Promoter (<=1kb),4,44524757,44710487,185731,2,Pax5-201,-230,Pax5-201;Pax5-202;Pax5-203;Pax5-204;Pax5-205;Pax5-207;Pax5-206;Pax5-209;Pax5-210;Pax5-212;Pax5-213;Pax5-214;Pax5-215,Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5,0;0;0;0;0;0;0;0;0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,10,45,18507,ENSMUSG00000014030,conserved gene but different region,4,44710639,44710987,349,*,349,27,0.601719198,0.855004083,0.077363897,8.51E-18,CpGisland,TRUE,NA,NRS
11301,cg26352942,-0.00000232,0.000000959,-2.420142607,0.016089108,loss,ns,0.00000202,0.00000163,1.241579374,0.215330381,pos,ns,0.000703398,0.000477474,1.473164357,0.141721345,pos,ns,0.848564735,-0.0000183,0.0000164,-1.114589915,0.265889557,neg,ns,0.02720048,Hsf2,Hsf2_fiveUTR,10,57486526,57486575,57486526,57486527,50,-,CGTGCCGGCTTTCCTCAGCAAGCTGTGGACGCTTGTGGAGGAAACCCACA,Promoter (<=1kb),10,57486385,57507668,21284,1,Hsf2-206,141,Hsf2-206;Hsf2-201;Hsf2-204,Hsf2;Hsf2;Hsf2,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,1,15500,ENSMUSG00000019878,conserved gene but different region,10,57486190,57487038,849,*,849,113,0.716136631,1.038650167,0.133097762,2.11E-101,CpGisland,TRUE,U1,Pr-A
24674,cg00893084,-0.00000884,0.00000458,-1.930930274,0.05440331,loss,ns,-0.00000966,0.00000778,-1.241507382,0.215356922,neg,ns,0.006370775,0.002278804,2.795666021,0.005502433,pos,ns,2.259445199,-0.000370211,0.0000784,-4.724016596,0.00000351,neg,ns,0.878698099,Lrp1,Lrp1_Exon,10,127553532,127553581,127553532,127553533,50,-,CGATCAGTGAATGGTCACCCCAGTCTGTCCAGTACAGGTACCTGGCGATG,"Exon (Lrp1-201/Lrp1, exon 60 of 89)",10,127538161,127621148,82988,2,Lrp1-201,67567,Lrp1-201;Lrp1-205,Lrp1;Lrp1,0;-3615,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,8,16971,ENSMUSG00000040249,conserved gene and region,10,127553362,127553533,172,*,172,15,0.604651163,0.954142012,0.087209302,7.29E-11,CpGisland,TRUE,U10,Tr-S
4366,cg15519745,0.00000284,0.00000631,0.450791747,0.652454789,gain,ns,0.0000133,0.0000107,1.241413007,0.215391717,pos,ns,0.002043115,0.003139603,0.650755873,0.515686124,pos,ns,0.287614554,-0.000128308,0.000107971,-1.188355783,0.23560286,neg,ns,0.881761812,Glis3,Glis3_Exon,19,28540318,28540367,28540318,28540319,50,+,CGCTGAACCATCATGGGACTGCTGGTGACCACTAGATTGTTGCAGCTGCC,"Exon (Glis3-209/Glis3, exon 3 of 11)",19,28258851,28680077,421227,2,Glis3-209,139710,Glis3-209;Glis3-201;Glis3-207;Glis3-202;Glis3-203;Glis3-206;Glis3-208,Glis3;Glis3;Glis3;Glis3;Glis3;Glis3;Glis3,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,8,226075,ENSMUSG00000052942,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8197,cg15445008,-0.00000319,0.00000187,-1.699614714,0.090206524,loss,ns,-0.00000395,0.00000319,-1.24123215,0.21545841,neg,ns,0.000458802,0.000933204,0.491641189,0.623320945,pos,ns,0.20528828,-0.000000234,0.0000321,-0.007281256,0.994195133,neg,ns,0.959324989,Ebf1,Ebf1_Intron,11,44845527,44845576,44845527,44845528,50,+,CGACATGTTACATTAATTTATAGGCACTGAGTGACTTATTAAAAGTGACG,"Intron (Ebf1-203/Ebf1, intron 6 of 15)",11,44617317,45004995,387679,1,Ebf1-203,228210,Ebf1-203;Ebf1-202;Ebf1-201,Ebf1;Ebf1;Ebf1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,80,13591,ENSMUSG00000057098,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8532,cg01650941,0.0000465,0.00000637,7.289208437,2.61E-12,gain,yes,-0.0000134,0.0000108,-1.241157882,0.215485801,neg,ns,-0.00092246,0.003172642,-0.290754532,0.771433483,neg,ns,0.112701515,0.000213706,0.000109107,1.958685511,0.051045945,pos,ns,0.169899556,Btrc,Btrc_Intron,19,45302407,45302456,45302407,45302408,50,-,CGGAAAATAGCATCACTGACATTTATATTAGAGGATATTGATGGCAGGAG,"Intron (Gm28578-211/Gm28578-211, intron 1 of 1)",19,45363734,45507736,144003,1,Btrc-204,-61327,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,63,98,12234,ENSMUSG00000025217,mapped to different genes,19,45301752,45302408,657,*,657,54,0.611872146,0.882427559,0.082191781,2.09E-36,CpGisland,TRUE,U3,Pr-B
27820,cg21231503,-0.00000311,0.00000107,-2.905378668,0.003932005,loss,ns,0.00000226,0.00000182,1.241131079,0.215495688,pos,ns,0.000550501,0.000532931,1.032968362,0.302423883,pos,ns,0.519383915,-0.0000117,0.0000183,-0.638762011,0.523449411,neg,ns,0.973204329,Esrrg,Esrrg_Intron,1,188151165,188151214,188151213,188151214,50,-,GAAGTCCCTTTCCCAGCCCACACTGAAACCAATTTATTGGTCATGATACG,"Intron (Esrrg-203/Esrrg, intron 6 of 7)",1,187609029,188214386,605358,1,Esrrg-203,542136,Esrrg-203;Esrrg-201;Esrrg-202,Esrrg;Esrrg;Esrrg,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,60,26381,ENSMUSG00000026610,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6275,cg14254904,-0.0000027,0.00000749,-0.359690948,0.719323168,loss,ns,0.0000158,0.0000127,1.240911615,0.215576647,pos,ns,0.001739257,0.003729196,0.466389246,0.641264473,pos,ns,0.19296282,0.0000331,0.000128247,0.258167544,0.796448916,pos,ns,0.801538259,Tshz3,Tshz3_Intron,7,36710625,36710674,36710673,36710674,50,+,ACAGAAAAGTTGTCAATCATCAAAGGCAGGTGAATAGCATTAGAAACACG,"Intron (Tshz3-201/Tshz3, intron 1 of 1)",7,36698118,36773553,75436,1,Tshz3-201,12507,Tshz3-201,Tshz3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,58,243931,ENSMUSG00000021217,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3721,cg14941902,0.0000732,0.0000159,4.607286751,0.00000597,gain,ns,0.0000335,0.000027,1.240833562,0.215605446,pos,ns,0.019600934,0.0079098,2.478056842,0.013742283,pos,ns,1.861941102,-0.000338055,0.000272017,-1.242768107,0.214892486,neg,ns,0.59440132,5730522E02Rik,5730522E02Rik_Intergenic_downstream,11,25156751,25156800,25156751,25156752,50,+,CGAATGCATGTGTGGTAATGTCATGAATATATTAACTTCCTTCATTGTCA,Distal Intergenic,11,25602816,25620098,17283,2,5730522E02Rik-205,463298,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,21,90,70626,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22267,cg01137681,-0.0000207,0.00000564,-3.672851149,0.000282445,loss,ns,-0.0000119,0.00000958,-1.24082061,0.215610225,neg,ns,-0.007180772,0.002807767,-2.557467372,0.011019426,neg,ns,1.957841017,0.000282289,0.0000966,2.923488291,0.003716203,pos,ns,0.792612114,Tead1,Tead1_fiveUTR,7,112759413,112759462,112759413,112759414,50,+,CGGCTTGGAAAATCCCACCGCCAAAATTGAGCCCAGCAGCTGGAGCGGCA,Promoter (<=1kb),7,112759438,112898660,139223,1,Tead1-211,0,Tead1-203;Tead1-216;Tead1-217;Tead1-201;Tead1-204;Tead1-214;Tead1-213;Tead1-206;Tead1-202;Tead1-205;Tead1-211;Tead1-207;Tead1-210;Tead1-212;Tead1-208;Tead1-209,Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,16,21676,ENSMUSG00000055320,conserved gene and region,7,112759413,112759537,125,*,125,12,0.6,1.076040172,0.096,2.98E-09,CpGisland,TRUE,U11,Tr-P
17889,cg02652404,0.0000163,0.00000473,3.449709331,0.000638929,gain,ns,-0.00000996,0.00000803,-1.240819663,0.215610575,neg,ns,0.003166914,0.002352649,1.346105551,0.179252002,pos,ns,0.746535985,-0.0000904,0.0000809,-1.116889376,0.264906529,neg,ns,0.094218771,Irx5,Irx5_Intron,8,92361805,92361854,92361805,92361806,50,+,CGTGTTTTATGCAAAGCAATCAGCTGGTGAACTTTGCTAATGAGTTCGAT,"Intron (Irx5-202/Irx5, intron 3 of 4)",8,92357625,92376286,18662,1,Irx5-202,4180,Irx5-202;Irx5-201,Irx5;Irx5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,30,54352,ENSMUSG00000031737,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
27418,cg03036064,-0.00000153,0.00000137,-1.122761345,0.262407669,loss,ns,-0.00000288,0.00000232,-1.240795058,0.215619654,neg,ns,0.00031611,0.000679897,0.464937898,0.642302334,pos,ns,0.1922605,-0.0000187,0.0000234,-0.800432085,0.424073483,neg,ns,0.062363804,Uck2,Uck2_Exon,1,167284811,167284860,167284859,167284860,50,-,GGAAGGGCTCGCCGCCGTTGGGCTGCTGGTGGTTCTGCAGGGTCTGCTCG,Promoter (<=1kb),1,167222883,167285320,62438,2,Uck2-202,460,Uck2-202;Uck2-205;Uck2-204;Uck2-203;Uck2-206,Uck2;Uck2;Uck2;Uck2;Uck2,0;0;-210;0;-104,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,80914,ENSMUSG00000026558,conserved gene but different region,1,167284247,167285334,1088,*,1088,127,0.730698529,0.876006441,0.116727941,1.63E-105,CpGisland,TRUE,U1,Pr-A
19579,cg23619049,-0.00000192,0.00000145,-1.326697244,0.185585303,loss,ns,0.00000306,0.00000246,1.240543399,0.215712531,pos,ns,0.001661756,0.000722138,2.301161385,0.02204569,pos,ns,1.656676298,-0.0000448,0.0000248,-1.803296768,0.072312491,neg,ns,0.965388236,Gm8641,Gm8641_Promoter,9,99954374,99954423,99954422,99954423,50,+,TCCATCTGAAGCTATTATGGCGTTAAAATTAACAATTATGCAGCAATGCG,Promoter (6-7kb),9,99946564,99947389,826,2,Gm8641-201,-6985,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,15,667456,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20798,cg11218107,-0.00000952,0.00000444,-2.143460598,0.032854047,loss,ns,0.00000936,0.00000754,1.240497313,0.215729542,pos,ns,0.000704949,0.002210202,0.31895234,0.749977456,pos,ns,0.124951791,0.000103497,0.000076,1.361641839,0.174299696,pos,ns,0.885388505,Slc9a5,Slc9a5_Exon,8,105355873,105355922,105355921,105355922,50,-,GGGGCAGCCGTGGGCTTAGTCTTTGCCTTCCTCCTGGCCCTGACCACACG,"Exon (Slc9a5-201/Slc9a5, exon 5 of 16)",8,105348843,105368743,19901,1,Slc9a5-201,7030,Slc9a5-201;Slc9a5-202,Slc9a5;Slc9a5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,277973,ENSMUSG00000014786,conserved gene and region,8,105355921,105356095,175,*,175,13,0.588571429,0.861742424,0.074285714,1.34E-08,CpGisland,TRUE,U11,Tr-P
6779,cg00126993,-0.00000756,0.00000971,-0.778815274,0.436682623,loss,ns,0.0000205,0.0000165,1.240465343,0.215741344,pos,ns,0.004980139,0.004830491,1.03097989,0.303353931,pos,ns,0.518050374,-0.000153505,0.00016612,-0.924058987,0.356174311,neg,ns,0.398528475,Dgkb,Dgkb_Intron,12,38435963,38436012,38435963,38435964,50,-,CGTGTAATACTTAAATATGTATTAAGAAGTGACTGACATAAATTAGGCAG,"Intron (Dgkb-203/Dgkb, intron 21 of 24)",12,37880337,38632119,751783,1,Dgkb-203,555626,Dgkb-203;Dgkb-206;Dgkb-201,Dgkb;Dgkb;Dgkb,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,4,217480,ENSMUSG00000036095,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
770,cg06410870,-0.0000125,0.00000715,-1.749702032,0.081159219,loss,ns,-0.0000151,0.0000121,-1.240380735,0.215772579,neg,ns,-0.007313493,0.00355753,-2.055778086,0.0406411,neg,ns,1.391034551,-0.0000185,0.000122343,-0.15140972,0.879751005,neg,ns,0.752594415,Usp7,Usp7_threeUTR,16,8695857,8695906,8695905,8695906,50,-,GGCTTTATCAAGAGACACGTCATAGTCCTGAATTCTCTCTGTTAAATTCG,3' UTR,16,8689595,8792308,102714,2,Usp7-207,96402,Usp7-207;Usp7-206;Usp7-208;Usp7-210;Usp7-211;Usp7-203;Usp7-213;Usp7-212;Usp7-201,Usp7;Usp7;Usp7;Usp7;Usp7;Usp7;Usp7;Usp7;Usp7,0;0;0;0;0;1675;2626;0;7875,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,10,252870,ENSMUSG00000022710,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2376,cg12050067,0.0000601,0.00000785,7.653910897,2.49E-13,gain,yes,-0.0000165,0.0000133,-1.240288591,0.215806599,neg,ns,0.013182566,0.003905684,3.375226089,0.000831377,pos,ns,3.080201896,-0.000337115,0.000134316,-2.509860663,0.012587235,neg,ns,0.102937583,Tfap2b,Tfap2b_Intron,1,19217439,19217488,19217439,19217440,50,-,CGATTAAGCGCCAGCATGCTGCGTGAATATCCTGTACAAAAACCCAGCAG,"Intron (Tfap2b-201/Tfap2b, intron 2 of 6)",1,19208914,19238576,29663,1,Tfap2b-201,8525,Tfap2b-201;Tfap2b-204;Tfap2b-202;Tfap2b-205;Tfap2b-203,Tfap2b;Tfap2b;Tfap2b;Tfap2b;Tfap2b,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,40,21419,ENSMUSG00000025927,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
27327,cg09355828,0.00000323,0.00000411,0.785865162,0.432546741,gain,ns,-0.00000866,0.00000698,-1.240274171,0.215811924,neg,ns,0.00062045,0.002045765,0.303285238,0.761875929,pos,ns,0.118115748,-0.000155998,0.0000704,-2.217340604,0.027324856,neg,ns,0.889361664,Slc12a5,Slc12a5_Exon,2,164980174,164980223,164980174,164980175,50,+,CGCACGCTGTCTCGCCATGGCTTTGATGTCTGTGCCAAGCTGGCTTGGGA,"Exon (Slc12a5-209/Slc12a5, exon 8 of 26)",2,164960824,164997569,36746,1,Slc12a5-209,19350,Slc12a5-209;Slc12a5-207;Slc12a5-201;Slc12a5-208;Slc12a5-206;Slc12a5-204,Slc12a5;Slc12a5;Slc12a5;Slc12a5;Slc12a5;Slc12a5,0;0;0;0;0;-2214,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,9,57138,ENSMUSG00000017740,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24213,cg24380618,-0.00000275,0.00000142,-1.938041005,0.053526005,loss,ns,0.00000299,0.00000241,1.240243739,0.215823161,pos,ns,0.000719621,0.000705492,1.020026093,0.308511457,pos,ns,0.510728704,-0.00000585,0.0000243,-0.241173179,0.809580333,neg,ns,0.964107792,Clip1,Clip1_threeUTR,5,123635228,123635277,123635276,123635277,50,-,CAGGCTCTGTTCAAGCTCCTTAATGCGGGCATGCTCCAGTTTGGTCTGCG,3' UTR,5,123577795,123684322,106528,2,Clip1-204,49045,Clip1-204;Clip1-205;Clip1-208;Clip1-203;Clip1-202;Clip1-201;Clip1-210;Clip1-211;Clip1-215,Clip1;Clip1;Clip1;Clip1;Clip1;Clip1;Clip1;Clip1;Clip1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,1,56430,ENSMUSG00000049550,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20153,cg23548789,0.0000335,0.00000482,6.950796085,2.15E-11,gain,yes,-0.0000101,0.00000818,-1.240194509,0.21584134,neg,ns,0.0000157,0.002396689,0.00656526,0.994765941,pos,ns,0.002279093,0.000117225,0.0000824,1.422250337,0.155958973,pos,ns,0.123451341,Calcoco1,Calcoco1_Intergenic_upstream,15,102746946,102746995,102746946,102746947,50,-,CGGTGGAACGTTTTAATTAGGCCTGAACAATAAACAAGCTAAACGAGGCG,Distal Intergenic,15,102706777,102722178,15402,2,Calcoco1-201,-24817,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,20,29,67488,ENSMUSG00000023055,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
7026,cg27067779,0.00000357,0.000000692,5.154042561,0.000000455,gain,yes,-0.00000146,0.00000118,-1.240129739,0.215865258,neg,ns,0.000478,0.000344401,1.387919087,0.166158389,pos,ns,0.779477726,-0.0000101,0.0000118,-0.855008787,0.393206583,neg,ns,0.015945039,Tfap2a,Tfap2a_Intron,13,40704186,40704235,40704186,40704187,50,+,CGCTCGGATGAAATTATGTCCTTCTCCGGGTGTGAAATTACCATGTTTAT,"Intron (Gm9979-201/Gm9979-201, intron 1 of 1)",13,40716724,40728944,12221,2,Tfap2a-209,24709,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,57,21418,ENSMUSG00000021359,mapped to different genes,13,40703950,40704213,264,*,264,30,0.674242424,1.001897533,0.113636364,6.28E-25,CpGisland,TRUE,U13,Hc-P
419,cg09748673,-0.000000356,0.00000119,-0.300027376,0.764357358,loss,ns,0.0000025,0.00000201,1.240013289,0.215908267,pos,ns,0.001107415,0.000590194,1.876356,0.06154576,pos,ns,1.21080186,-0.0000465,0.0000203,-2.292548985,0.022543569,neg,ns,0.971877467,Kat5,Kat5_Exon,19,5608888,5608937,5608936,5608937,50,+,GCAGGTTGAAGCGGAGTGTGATCTGGACCGGGATTGGCAAGGTCTTCCCG,"Exon (Kat5-210/Kat5, exon 5 of 15)",19,5603014,5610035,7022,2,Kat5-210,1098,Kat5-212;Kat5-210;Kat5-201;Kat5-211;Kat5-202;Kat5-206;Kat5-203;Kat5-204;Kat5-209;Kat5-205;Kat5-207;Kat5-208;Rnaseh2c-206,Kat5;Kat5;Kat5;Kat5;Kat5;Kat5;Kat5;Kat5;Kat5;Kat5;Kat5;Kat5;Rnaseh2c,0;0;0;0;0;0;0;-618;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,3,81601,ENSMUSG00000024926,conserved gene and region,19,5608802,5608956,155,*,155,10,0.677419355,0.608798115,0.064516129,0.00000373,CpGisland,TRUE,NA,NRS
9671,cg03094159,-0.0000318,0.0000099,-3.211320897,0.001459975,loss,ns,0.0000209,0.0000168,1.239911325,0.215945931,pos,ns,-0.001913011,0.004929155,-0.388101164,0.698207543,neg,ns,0.156015463,-0.000297226,0.000169513,-1.753408094,0.080520303,neg,ns,0.849310081,Tenm3,Tenm3_Intron,8,49864079,49864128,49864127,49864128,50,-,CGAGGCACATTTACTCAGCTTACTTTTGAAACTTCTAATGAATTCTCTCG,"Intron (Gm45321-202/Gm45321-202, intron 1 of 3)",8,48646261,48843951,197691,2,Tenm3-207,-1020177,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,39,23965,ENSMUSG00000031561,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18844,cg23891259,-0.00000598,0.00000143,-4.196143824,0.0000355,loss,ns,0.000003,0.00000242,1.239910223,0.215946338,pos,ns,-0.000000134,0.000709809,-0.000188948,0.999849363,neg,ns,0.0000654,0.0000246,0.0000244,1.008548543,0.313977752,pos,ns,0.965045403,E130114P18Rik,E130114P18Rik_Intron,4,97661756,97661805,97661804,97661805,50,+,TAGGTCTTAATAAGCCTTACACAACTGTTTAGGCATTTATTCTATTAACG,"Intron (E130114P18Rik-204/E130114P18Rik, intron 3 of 5)",4,97568133,97778048,209916,2,E130114P18Rik-204,116243,E130114P18Rik-204;E130114P18Rik-209,E130114P18Rik;E130114P18Rik,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,24,319865,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1892,cg05142135,0.00000158,0.00000426,0.37109017,0.710823844,gain,ns,0.00000897,0.00000724,1.239775951,0.215995943,pos,ns,0.00340032,0.002120209,1.603766533,0.109783831,pos,ns,0.959461619,-0.000134145,0.0000729,-1.839771008,0.066757843,neg,ns,0.904489109,Inhba,Inhba_threeUTR,13,16031507,16031556,16031507,16031508,50,+,CGAGGCATGCAGTCAATATTTTGTACAGTTAGTGGACAGTATTCAGCAAC,3' UTR,13,16011851,16031621,19771,1,Inhba-201,19656,Inhba-201;Inhba-202,Inhba;Inhba,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,2,16323,ENSMUSG00000041324,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2507,cg27360485,-0.000015,0.00000269,-5.58329436,5.16E-08,loss,yes,-0.00000567,0.00000457,-1.239690823,0.216027397,neg,ns,-0.000905971,0.001340097,-0.676048816,0.49951369,neg,ns,0.301452604,-0.0000785,0.0000461,-1.703339863,0.089506704,neg,ns,0.943198129,Klhl24,Klhl24_Exon,16,20106772,20106821,20106772,20106773,50,-,CGTGATTCCCCAGCAACTAAGCGAAAAGTTTTTGAAATGGACCCCAAATC,"Exon (Klhl24-201/Klhl24, exon 3 of 8)",16,20097542,20129221,31680,1,Klhl24-201,9230,Klhl24-201;Klhl24-204;Klhl24-205;Klhl24-203,Klhl24;Klhl24;Klhl24;Klhl24,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,75785,ENSMUSG00000062901,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16239,cg16038896,0.0000759,0.0000117,6.490515613,3.39E-10,gain,yes,-0.0000246,0.0000199,-1.239008831,0.216279503,neg,ns,0.020784752,0.005819876,3.571339444,0.000411555,pos,ns,3.385572535,-0.000682577,0.000200145,-3.410413871,0.000734561,neg,ns,0.138372719,Bnc2,Bnc2_Intron,4,84637775,84637824,84637823,84637824,50,-,ATGTGTCTAGTGGCACTGGAATAACCTGAATATGTGCTCCAGATGTGTCG,"Intron (Bnc2-201/Bnc2, intron 1 of 7)",4,84275095,84675034,399940,2,Bnc2-201,37210,Bnc2-201;Bnc2-202;Bnc2-214;Bnc2-215;Bnc2-206;Bnc2-211;Bnc2-217;Bnc2-207;Bnc2-203;Bnc2-209;Bnc2-204;Bnc2-210,Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,91,242509,ENSMUSG00000028487,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
25164,cg25127532,-0.0000297,0.00000906,-3.274755155,0.001177222,loss,ns,0.0000191,0.0000154,1.238996862,0.216283929,pos,ns,0.00103746,0.004509313,0.230070404,0.818188803,pos,ns,0.087146468,-0.000399868,0.000155075,-2.578548379,0.01038269,neg,ns,0.858947216,Ctbp2,Ctbp2_Intergenic_upstream,7,133223921,133223970,133223969,133223970,50,+,CTGCAGACCCATTAGCAACTTTTTCTTGTTTTCTTTTAGAATATTAAACG,Distal Intergenic,7,133025702,133124354,98653,2,Ctbp2-218,-99567,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,4,13017,ENSMUSG00000030970,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26686,cg07521727,-0.00000378,0.0000014,-2.706207971,0.007182511,loss,ns,0.00000294,0.00000237,1.238884977,0.21632531,pos,ns,0.001138231,0.000695568,1.636405801,0.102769471,pos,ns,0.98813588,-0.0000222,0.0000239,-0.929333696,0.353439252,neg,ns,0.968355657,Camta1,Camta1_threeUTR,4,151059925,151059974,151059973,151059974,50,+,GAAATCCTACTCCTGGCACTTGGGAATTCAGATTATCCAAGAAAGCTGCG,3' UTR,4,150917322,151861669,944348,2,Camta1-211,801695,Camta1-211;Camta1-202;Camta1-207;Camta1-201;Camta1-204;Camta1-203;Vamp3-201;Vamp3-203;Vamp3-202,Camta1;Camta1;Camta1;Camta1;Camta1;Camta1;Vamp3;Vamp3;Vamp3,0;0;0;0;0;0;-1972;-1979;-1962,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,22,100072,ENSMUSG00000014592,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27496,cg02393105,-0.00014455,0.0000225,-6.426507752,4.92E-10,loss,yes,0.0000473,0.0000382,1.238882502,0.216326225,pos,ns,0.062388927,0.011194905,5.57297529,5.44E-08,pos,ns,7.264021762,-0.003148657,0.000384992,-8.178502101,7.47E-15,neg,yes,0.489280312,Pbx1,Pbx1_Intergenic_upstream,1,168473296,168473345,168473296,168473297,50,-,CGAGTTCATGCAGAATAAAGCAATTACCACACATGAGCTCGAGTTAAGGT,Distal Intergenic,1,168119364,168432270,312907,2,Pbx1-208,-41075,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,17,84,18514,ENSMUSG00000052534,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15627,cg04547147,-0.000012,0.00000584,-2.049722845,0.041232583,loss,ns,-0.0000123,0.00000991,-1.238831479,0.216345098,neg,ns,-0.005683021,0.002904338,-1.956735682,0.051275971,neg,ns,1.29008611,0.00000188,0.0000999,0.018785964,0.985023936,pos,ns,0.828643139,Nfib,Nfib_Exon,4,82320523,82320572,82320523,82320524,50,-,CGATTGGCTTGAGATGTGCCTGAGGCTGTGTAGGCTGATTAAGGAAGAAC,"Exon (Nfib-201/Nfib, exon 10 of 12)",4,82290173,82505308,215136,2,Nfib-201,184736,Nfib-201;Nfib-203;Nfib-202;Nfib-205;Nfib-206;Nfib-204,Nfib;Nfib;Nfib;Nfib;Nfib;Nfib,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,66,18028,ENSMUSG00000008575,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21140,cg18212502,0.000203836,0.000036,5.65484679,3.54E-08,gain,yes,-0.0000759,0.0000612,-1.23872614,0.216384065,neg,ns,0.037286526,0.01794058,2.078334482,0.038500956,pos,ns,1.414528482,-0.002380913,0.000616975,-3.859010243,0.000138534,neg,ns,0.602416242,Gm17304,Gm17304_Intron,5,106560252,106560301,106560252,106560253,50,+,CGGAAGTTTCCGCAGTCGCTATCTGCCACCTATTTGACAATTTCTGTCAC,"Intron (Gm28050-202/Gm28050-202, intron 1 of 2)",5,106609098,106609201,104,1,Gm17304-201,-48797,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,35,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
878,cg03918464,-0.00000723,0.00000207,-3.497220603,0.00053885,loss,ns,-0.00000435,0.00000351,-1.238691008,0.216397063,neg,ns,-0.002932374,0.001028869,-2.850094244,0.004663444,neg,ns,2.331293234,0.0000435,0.0000354,1.228543862,0.22017472,pos,ns,0.952276583,Gm13221,Gm13221_Intergenic_upstream,2,9287802,9287851,9287802,9287803,50,+,CGGGGTTGAAAATAATGAGTTTGGTGGATTACATCTGTCACCGTGAATTA,Distal Intergenic,2,9270080,9270509,430,2,Gm13221-201,-17293,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,3,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26900,cg05358179,0.0000968,0.0000119,8.165798736,8.15E-15,gain,yes,-0.0000249,0.0000201,-1.238630663,0.216419389,neg,ns,0.016882673,0.005899133,2.861890292,0.004497714,pos,ns,2.347008191,-0.000458477,0.000202871,-2.259947913,0.024518235,neg,ns,0.176458122,Prdm16,Prdm16_Intron,4,154499912,154499961,154499912,154499913,50,-,CGGCAGACAATGTGTGTCTTGTGTGAGTAATTTAGCGCTGTGGCCAGTCA,"Intron (Prdm16-201/Prdm16, intron 2 of 16)",4,154316125,154636866,320742,2,Prdm16-201,136905,Prdm16-201;Prdm16-202;Prdm16-203;Prdm16-204;Prdm16-205;Prdm16-206;Prdm16-210;Prdm16-207;Prdm16-209;Prdm16-212,Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,32,70673,ENSMUSG00000039410,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23435,cg21921063,0.0000498,0.0000058,8.589695484,4.33E-16,gain,yes,-0.0000122,0.00000986,-1.238557901,0.216446311,neg,ns,0.008908361,0.002887505,3.085140716,0.002217931,pos,ns,2.654051994,-0.000286574,0.0000993,-2.885909911,0.00417671,neg,ns,0.077277049,Dpyd,Dpyd_Exon,3,118433866,118433915,118433866,118433867,50,-,CGGGTATTCTTGGGTGGATAATACGGATTACGTTGTTATTGCTTAAGAAT,"Exon (Gm26871-202/Gm26871-202, exon 3 of 3)",3,118562129,119432924,870796,1,Dpyd-201,-128263,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,29,99586,ENSMUSG00000033308,mapped to different genes,3,118433691,118434190,500,*,500,37,0.624,0.795801609,0.074,1.85E-23,CpGisland,TRUE,U3,Pr-B
4732,cg08752464,0.00000264,0.00000275,0.959945511,0.337830746,gain,ns,-0.0000058,0.00000468,-1.238486415,0.216472764,neg,ns,0.002572928,0.001371145,1.87648128,0.061528511,pos,ns,1.210923594,-0.00000934,0.0000472,-0.198145712,0.843060935,neg,ns,0.928525839,Sh3glb2,Sh3glb2_Exon,2,30348570,30348619,30348570,30348571,50,+,CGAGAGAATGTAATTACGAGGTCTAGTCTCCTGAAAGTCAGGCACCGTCT,"Exon (Sh3glb2-202/Sh3glb2, exon 6 of 12)",2,30344809,30359240,14432,2,Sh3glb2-202,10621,Nup188-201;Nup188-203;Sh3glb2-202;Sh3glb2-201;Sh3glb2-203;Sh3glb2-214;Sh3glb2-204;Sh3glb2-213;Sh3glb2-209;Sh3glb2-205;Sh3glb2-211;Sh3glb2-210;Sh3glb2-207;Sh3glb2-208;Sh3glb2-212;Sh3glb2-206,Nup188;Nup188;Sh3glb2;Sh3glb2;Sh3glb2;Sh3glb2;Sh3glb2;Sh3glb2;Sh3glb2;Sh3glb2;Sh3glb2;Sh3glb2;Sh3glb2;Sh3glb2;Sh3glb2;Sh3glb2,62173;5630;0;0;0;0;0;0;-2469;0;-914;-983;0;0;10626;10641,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,227700,ENSMUSG00000026860,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9639,cg26604524,0.0000107,0.00000905,1.184337353,0.237186795,gain,ns,0.000019,0.0000154,1.238347459,0.21652419,pos,ns,0.013779947,0.004506043,3.058103519,0.002421612,pos,ns,2.615895382,-0.000159333,0.000154962,-1.028207032,0.304654038,neg,ns,0.790680186,Dbx1,Dbx1_Promoter,7,49640574,49640623,49640622,49640623,50,+,GCCAATCAAGCAGATGGTTTGCAGGAAATATAGCTTGGCCTCGCTGACCG,Promoter (3-4kb),7,49631499,49636849,5351,2,Dbx1-201,-3725,Dbx1-201,Dbx1,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,8,18,13172,ENSMUSG00000030507,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
6657,cg14725330,0.0000111,0.00000627,1.773589468,0.077112763,gain,ns,-0.0000132,0.0000107,-1.238320179,0.216534287,neg,ns,0.016241148,0.00312247,5.20137828,0.00000036,pos,ns,6.443489626,-0.001025009,0.000107381,-9.545489317,4.24E-19,neg,yes,0.897913551,Rreb1,Rreb1_Exon,13,37941569,37941618,37941617,37941618,50,-,TGCGATGCCTTCTTTTCTACCAAATCTAACTGTGAACGCCACCAGTTGCG,"Exon (Rreb1-207/Rreb1, exon 11 of 13)",13,37826315,37952005,125691,1,Rreb1-207,115254,Rreb1-207;Rreb1-206;Rreb1-205;Rreb1-201,Rreb1;Rreb1;Rreb1;Rreb1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,10,68750,ENSMUSG00000039087,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
8100,cg17118421,0.0000289,0.00000542,5.334747076,0.000000185,gain,yes,-0.0000114,0.0000092,-1.238130555,0.216604481,neg,ns,0.009628007,0.002696398,3.57069222,0.000412532,pos,ns,3.384541966,-0.000453187,0.0000927,-4.887226675,0.00000164,neg,yes,0.111393002,Pax2,Pax2_Exon,19,44742614,44742663,44742662,44742663,50,+,TAACTGGTTTTGTGTCAGGAAGATCTTTCTCGCCGCTACCCAGCCTGGCG,"Exon (Gm35610-202/Gm35610-202, exon 6 of 6)",19,44756045,44837851,81807,1,Pax2-203,-13382,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,16,166,18504,ENSMUSG00000004231,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
1942,cg04824466,0.000000723,0.00000175,0.413389821,0.679606845,gain,ns,-0.00000368,0.00000297,-1.237851588,0.216707778,neg,ns,-0.002803263,0.000870437,-3.220522663,0.001415386,neg,ns,2.849125024,0.0000558,0.0000299,1.863653865,0.063315636,pos,ns,0.958215543,Arhgap35,Arhgap35_Exon,7,16562542,16562591,16562590,16562591,50,+,GAGGCCTTACGTTTGGCTGAATAAAAAACAATGTACCCATGAACCAACCG,"Exon (Arhgap35-201/Arhgap35, exon 2 of 7)",7,16493719,16614993,121275,2,Arhgap35-201,52402,Arhgap35-201;Arhgap35-202,Arhgap35;Arhgap35,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,5,232906,ENSMUSG00000058230,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10329,cg01334218,0.0000259,0.0000104,2.503343386,0.012816637,gain,ns,0.0000218,0.0000176,1.237759343,0.216741943,pos,ns,0.005553308,0.005151418,1.078015438,0.281864986,pos,ns,0.54995887,-0.000114027,0.000177157,-0.643650815,0.520277768,neg,ns,0.635507202,Akap6,Akap6_Intron,12,53061931,53061980,53061931,53061932,50,+,CGCTGGGGTCTGCCCCTTGGGCACGTCAAAGCTTCAGACCTGACAAATCA,"Intron (Akap6-201/Akap6, intron 9 of 13)",12,52699383,53155599,456217,1,Akap6-201,362548,Akap6-201;Akap6-202,Akap6;Akap6,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,13,238161,ENSMUSG00000061603,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2892,cg03219288,-0.00000347,0.00000124,-2.802439122,0.005391049,loss,ns,0.0000026,0.0000021,1.237414582,0.216869666,pos,ns,0.001284155,0.000615567,2.08613433,0.037783656,pos,ns,1.422696027,-0.0000468,0.0000212,-2.208811554,0.027918987,neg,ns,0.96043832,Ehbp1,Ehbp1_Intron,11,22034303,22034352,22034351,22034352,50,-,AAAGCTAAAAGACATCATCCTATTAACTAGTGATCTCAACTGCTAATGCG,"Intron (Ehbp1-201/Ehbp1, intron 20 of 23)",11,22005828,22285838,280011,2,Ehbp1-201,251486,Ehbp1-201;Ehbp1-202;Ehbp1-207,Ehbp1;Ehbp1;Ehbp1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,34,45,216565,ENSMUSG00000042302,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
422,cg23904344,0.00000161,0.00000281,0.570690005,0.568623228,gain,ns,-0.00000592,0.00000478,-1.237043322,0.217007267,neg,ns,0.000475422,0.001400966,0.339353008,0.734573592,pos,ns,0.133964689,-0.0000363,0.0000482,-0.754256338,0.451267868,neg,ns,0.894106697,Pcnx3,Pcnx3_Exon,19,5672614,5672663,5672614,5672615,50,-,CGTGTCAAGTGCTCATAGAAGATGGAGTTGAGGTTGTTGTCATCAGCGCC,"Exon (Pcnx3-202/Pcnx3, exon 26 of 35)",19,5664635,5688908,24274,2,Pcnx3-202,16245,Pcnx3-202;Pcnx3-211;Pcnx3-201;Pcnx3-210;Pcnx3-208,Pcnx3;Pcnx3;Pcnx3;Pcnx3;Pcnx3,0;0;0;0;6914,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,7,104401,ENSMUSG00000054874,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7160,cg19939065,0.000107627,0.00000903,11.91376444,3.38E-27,gain,yes,-0.000019,0.0000153,-1.236706171,0.21713228,neg,ns,0.015496116,0.004496238,3.446462985,0.000646365,pos,ns,3.189522033,-0.000327693,0.000154625,-2.119269343,0.034862425,neg,ns,0.1282868,Lsamp,Lsamp_Exon,16,41533489,41533538,41533489,41533490,50,-,CGGACAACATCACCGTGAGGCAGGGGGACACAGCCATCCTCAGGTAGGGC,"Exon (Lsamp-206/Lsamp, exon 3 of 9)",16,39984371,42176295,2191925,1,Lsamp-206,1549118,Lsamp-206;Lsamp-201;Lsamp-202;Lsamp-205,Lsamp;Lsamp;Lsamp;Lsamp,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,23,268890,ENSMUSG00000061080,conserved gene and region,16,41533460,41533543,84,*,84,8,0.607142857,1.043478261,0.095238095,0.00000318,CpGisland,TRUE,NA,NRS
6987,cg17431477,0.00007,0.00000964,7.255855652,3.22E-12,gain,yes,0.0000203,0.0000164,1.236437011,0.217232121,pos,ns,0.014517698,0.004798481,3.025477646,0.002690248,pos,ns,2.570207631,-0.0000683,0.000165019,-0.413894896,0.679237288,neg,ns,0.527668178,Lsamp,Lsamp_Intron,16,40364676,40364725,40364724,40364725,50,+,CCACTGTTTGACTGCATGTCTCCGTCAAGGAGACTGTCTTCCTTAGATCG,"Intron (Lsamp-207/Lsamp, intron 1 of 2)",16,39984361,40979709,995349,1,Lsamp-207,380315,Lsamp-207;Lsamp-206;Lsamp-208;Lsamp-210;Lsamp-209,Lsamp;Lsamp;Lsamp;Lsamp;Lsamp,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,23,268890,ENSMUSG00000061080,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
144,cg12069073,-0.00000367,0.00000121,-3.023892441,0.002703973,loss,ns,-0.00000255,0.00000206,-1.236424577,0.217236734,neg,ns,-0.001076881,0.000603755,-1.783639207,0.075460472,neg,ns,1.122280486,-0.0000248,0.0000208,-1.192952416,0.233800255,neg,ns,0.030326347,Kdm2a,Kdm2a_fiveUTR,19,4333924,4333973,4333924,4333925,50,+,CGTCACCCACATGCAGCTCCCAGAAATGCTTTGCAACGGAAGATGGCAGG,5' UTR,19,4314419,4398285,83867,2,Kdm2a-201,64312,Kdm2a-201;Kdm2a-202;Kdm2a-212;Kdm2a-210,Kdm2a;Kdm2a;Kdm2a;Kdm2a,0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,30,225876,ENSMUSG00000054611,conserved gene and region,19,4333891,4334071,181,*,181,11,0.651933702,0.572620075,0.060773481,0.00000179,CpGisland,TRUE,NA,NRS
19792,cg15829742,0.0000139,0.00000401,3.469860074,0.000594529,gain,ns,-0.00000843,0.00000682,-1.236074285,0.217366721,neg,ns,-0.004263599,0.00199798,-2.133954857,0.033631029,neg,ns,1.473259851,-0.000065,0.0000687,-0.9456339,0.345071822,neg,ns,0.833297084,Msl2,Msl2_Exon,9,101101914,101101963,101101914,101101915,50,+,CGTGGCTGCCAAAACTCCTATATGGCCAATGGGGAGAAGAAGCTGGAGGC,"Exon (Msl2-201/Msl2, exon 2 of 2)",9,101074762,101104800,30039,1,Msl2-201,27152,Msl2-202;Msl2-201;Ppp2r3a-202;Ppp2r3a-201,Msl2;Msl2;Ppp2r3a;Ppp2r3a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,19,77853,ENSMUSG00000066415,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21910,cg11764506,-0.00000024,0.000000479,-0.500732317,0.61691485,loss,ns,0.000001,0.000000813,1.236036553,0.217380726,pos,ns,-0.000127125,0.000238161,-0.533775278,0.593879544,neg,ns,0.226301634,0.00000184,0.00000819,0.224773469,0.822303593,pos,ns,0.985062177,Rtl1,Rtl1_Exon,12,109710209,109710258,109710209,109710210,50,+,CGCTTTATCTGTGACGTATGTAACACGGTCCACTAACCCTCAGTATCAAA,"Exon (Mir411-201/Mir411-201, exon 1 of 1)",12,109589193,109600330,11138,2,Rtl1-201,-109879,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,9,353326,ENSMUSG00000085925,mapped to different genes,12,109710141,109710303,163,*,163,11,0.539877301,0.926614987,0.067484663,0.000000642,CpGisland,TRUE,U11,Tr-P
15963,cg00419757,-0.0000036,0.00000523,-0.687944287,0.492002291,loss,ns,0.000011,0.00000888,1.235978129,0.217402412,pos,ns,0.002210374,0.002601004,0.849815607,0.396083443,pos,ns,0.402213312,-0.000153477,0.0000894,-1.715822798,0.087193585,neg,ns,0.910546049,Gm8447,Gm8447_Intron,13,84057236,84057285,84057284,84057285,50,+,GGTGCTGGCATTCCCAATGGGATTGTAATATAATTGTTCTGGTGTCTGCG,"Intron (Gm17750-201/Gm17750-201, intron 1 of 1)",13,83997547,83998439,893,2,Gm8447-201,-58797,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,9,667081,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20740,cg18377921,-0.00000503,0.00000389,-1.291795096,0.197390361,loss,ns,-0.00000817,0.00000661,-1.235927635,0.217421156,neg,ns,-0.003281248,0.001937407,-1.693628728,0.091340333,neg,ns,1.039337408,0.0000796,0.0000666,1.194921709,0.233030996,pos,ns,0.908623456,Cntn6,Cntn6_Intron,6,104809158,104809207,104809158,104809159,50,-,CGGAACTTGGAAAAGCATATCTAATGTGCAAATTAAGTTTATTGCTGCTC,"Intron (Cntn6-202/Cntn6, intron 11 of 21)",6,104492811,104863248,370438,1,Cntn6-202,316347,Cntn6-202;Cntn6-201;Cntn6-205,Cntn6;Cntn6;Cntn6,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,4,53870,ENSMUSG00000030092,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4509,cg22196976,0.0000252,0.00000543,4.635316691,0.00000526,gain,ns,-0.0000114,0.00000923,-1.23587884,0.217439271,neg,ns,-0.000585459,0.002702736,-0.216617235,0.828649133,neg,ns,0.08162932,-0.00026845,0.0000929,-2.888205985,0.004147145,neg,ns,0.745705726,Mtch1,Mtch1_fiveUTR,17,29342845,29342894,29342893,29342894,50,-,ATAGAGGACCTTCCTCCCCAGCACATTGGTCCCAAGGGTGGGGGGCATCG,5' UTR,17,29332072,29347934,15863,2,Mtch1-201,5040,Mtch1-201;Mtch1-215;Mtch1-211;Mtch1-217;Mtch1-216;Mtch1-207;Mtch1-208;Mtch1-210;Mtch1-202;Mtch1-214;Mtch1-203;Mtch1-212;Mtch1-213;Mtch1-209;Mtch1-206;Mtch1-204,Mtch1;Mtch1;Mtch1;Mtch1;Mtch1;Mtch1;Mtch1;Mtch1;Mtch1;Mtch1;Mtch1;Mtch1;Mtch1;Mtch1;Mtch1;Mtch1,0;-2355;0;0;0;0;0;0;0;0;-2309;0;0;0;-2392;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,1,56462,ENSMUSG00000024012,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5454,cg22492693,-0.00000321,0.0000018,-1.785893619,0.075093836,loss,ns,0.00000377,0.00000305,1.235837741,0.217454529,pos,ns,0.000221165,0.000894131,0.247351635,0.80479984,pos,ns,0.094312118,-0.0000135,0.0000307,-0.437813246,0.661826554,neg,ns,0.952334959,Nat8l,Nat8l_threeUTR,5,34002939,34002988,34002939,34002940,50,+,CGCTTGGGGATGGGAGTTTTGTAGACTGTACAGAAATCGGCACCCTATTT,3' UTR,5,33995984,34005916,9933,1,Nat8l-201,6955,Nat8l-201;Nat8l-202;Poln-208;Poln-202;Poln-201;Poln-206;Poln-205,Nat8l;Nat8l;Poln;Poln;Poln;Poln;Poln,0;3176;10574;48129;166460;166460;166438,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,269642,ENSMUSG00000048142,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27530,cg09252031,-0.00000242,0.00000076,-3.178000359,0.001632547,loss,ns,-0.0000016,0.00000129,-1.235704703,0.217503926,neg,ns,-0.000425409,0.00037837,-1.124320428,0.261746948,neg,ns,0.582118374,-0.000000352,0.000013,-0.027043562,0.97844239,neg,ns,0.978156922,Zfp64,Zfp64_Intergenic_upstream,2,169216157,169216206,169216205,169216206,50,+,AATATCCATTAAAGGTTTATTTGATATCTTCCTAATTATTGCCCATTGCG,Distal Intergenic,2,168893331,168955587,62257,2,Zfp64-203,-260570,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,11,22722,ENSMUSG00000027551,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U14,Hc-H
182,cg25646617,-0.00000326,0.00000135,-2.422071787,0.016005564,loss,ns,0.00000282,0.00000229,1.235663295,0.217519303,pos,ns,0.000376111,0.000669716,0.561597923,0.574795768,pos,ns,0.240486438,-0.0000171,0.000023,-0.744286001,0.457267273,neg,ns,0.057075095,Casd1,Casd1_fiveUTR,6,4601151,4601200,4601199,4601200,50,-,TGTCATGGAGGAACCAAGATGGCGGCTCTGGCCTACAACCTGGGCAAGCG,Promoter (<=1kb),6,4600839,4643355,42517,1,Casd1-201,312,Casd1-201;Casd1-204;Casd1-203;Casd1-202,Casd1;Casd1;Casd1;Casd1,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,6,213819,ENSMUSG00000015189,conserved gene but different region,6,4600919,4601684,766,*,766,100,0.791122715,0.834786399,0.130548303,8.09E-89,CpGisland,TRUE,U1,Pr-A
11648,cg06623498,-0.0000258,0.0000117,-2.204162259,0.028247544,loss,ns,0.0000245,0.0000199,1.235611051,0.217538704,pos,ns,-0.004636103,0.005815395,-0.797212077,0.425938047,neg,ns,0.370653565,-0.0000865,0.000199991,-0.432269831,0.665845844,neg,ns,0.761301238,Gm18161,Gm18161_Intergenic_downstream,19,59628581,59628630,59628629,59628630,50,+,TTGATTTGTTTAATAGTGTCAGGAAGTCAAAATTCACAAATCTCCTGTCG,Distal Intergenic,19,59540451,59540978,528,1,Gm18161-201,88130,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,8,100416590,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9866,cg10700715,0.000124957,0.0000179,6.980410443,1.79E-11,gain,yes,-0.0000376,0.0000304,-1.235498381,0.21758055,neg,ns,0.031758619,0.008909551,3.564558756,0.000421907,pos,ns,3.374783181,-0.000727563,0.000306399,-2.374561185,0.018178312,neg,ns,0.410638079,Clk4,Clk4_Exon,11,51272942,51272991,51272990,51272991,50,-,GCCAACTGTTCGTGGCCTGGTGCTTATCTGAATGCCTGAATATCTCCCCG,"Exon (Clk4-213/Clk4, exon 1 of 3)",11,51261730,51273626,11897,1,Clk4-205,11212,Clk4-214;Clk4-205;Clk4-201;Clk4-204;Clk4-207;Clk4-212;Clk4-210;Clk4-203;Clk4-213;Clk4-202;Clk4-208;Clk4-211,Clk4;Clk4;Clk4;Clk4;Clk4;Clk4;Clk4;Clk4;Clk4;Clk4;Clk4;Clk4,11212;0;0;0;9778;0;9768;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,7,12750,ENSMUSG00000020385,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26109,cg21087043,0.0000502,0.0000151,3.323663646,0.000994902,gain,ns,0.0000317,0.0000256,1.235453011,0.217597402,pos,ns,-0.004329892,0.007511589,-0.576428175,0.564744088,neg,ns,0.248148307,0.000306516,0.000258323,1.186559879,0.236309815,pos,ns,0.551019756,Dcx,Dcx_fiveUTR,X,143933070,143933119,143933070,143933071,50,+,CGGTTTTCTGCTGGTTGGGTGGAGATGCTGAGAGAAAGAAAACCAATCTC,Promoter (<=1kb),20,143873752,143933119,59368,2,Dcx-205,0,Dcx-201;Dcx-203;Dcx-202;Dcx-204;Dcx-206;Dcx-205,Dcx;Dcx;Dcx;Dcx;Dcx;Dcx,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,8,13193,ENSMUSG00000031285,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1354,cg03199779,0.000012,0.00000338,3.564513437,0.000421977,gain,ns,-0.00000709,0.00000574,-1.235414839,0.217611581,neg,ns,0.004486574,0.001680968,2.669041424,0.008007333,pos,ns,2.096512131,-0.00015325,0.0000578,-2.651004014,0.008437559,neg,ns,0.076589676,Sox1,Sox1_Exon,8,12430274,12430323,12430274,12430275,50,+,CGTGCACTCAATGGCTTCACAAAGCTGATTACAAGCTTCAGCGCATTCCT,"Exon (Sox1ot-201/Sox1ot-201, exon 7 of 9)",8,12395295,12400126,4832,1,Sox1-201,34979,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,15,20664,ENSMUSG00000096014,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
7029,cg13743408,0.0000534,0.00000775,6.894958629,3.03E-11,gain,yes,-0.0000163,0.0000132,-1.235376532,0.217625811,neg,ns,0.004502011,0.003857164,1.167181449,0.244034107,pos,ns,0.612549471,0.000122861,0.000132648,0.926220291,0.355052007,pos,ns,0.101754426,Tfap2a,Tfap2a_Intron,13,40704643,40704692,40704643,40704644,50,+,CGTATTAAATCTTTATTAAAGTGAAGTCATTCTTATTGAAATGATGTATT,"Intron (Gm9979-201/Gm9979-201, intron 1 of 1)",13,40716724,40728944,12221,2,Tfap2a-209,24252,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,57,21418,ENSMUSG00000021359,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
15261,cg10318762,-0.0000462,0.00000604,-7.640036214,2.73E-13,loss,yes,-0.0000127,0.0000103,-1.235356126,0.217633391,neg,ns,0.014885232,0.003007984,4.948574226,0.00000123,pos,ns,5.910503267,-0.000606884,0.000103444,-5.866764802,1.14E-08,neg,yes,0.83844373,Hnrnpll,Hnrnpll_Exon,17,80048172,80048221,80048172,80048173,50,+,CGATGTTGTGCATGATGAAGTGTAGAGTCAGCCTGCTGGAGTCCTCTATC,"Exon (Hnrnpll-207/Hnrnpll, exon 6 of 6)",17,80029487,80062227,32741,2,Hnrnpll-205,14006,Hnrnpll-205;Hnrnpll-201;Hnrnpll-203;Hnrnpll-204;Hnrnpll-207;Hnrnpll-206,Hnrnpll;Hnrnpll;Hnrnpll;Hnrnpll;Hnrnpll;Hnrnpll,0;0;0;0;0;14047,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,6,72692,ENSMUSG00000024095,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16041,cg12287827,-0.00000279,0.00000223,-1.254125312,0.210741305,loss,ns,0.00000467,0.00000378,1.235306832,0.217651704,pos,ns,0.000280124,0.001107442,0.252947318,0.800476574,pos,ns,0.096651373,0.000012,0.0000381,0.315179445,0.752837466,pos,ns,0.951763214,Bnc2,Bnc2_Intron,4,84282349,84282398,84282349,84282350,50,-,CGGCACGTCTGTTGTAATAACAGGTAGGATGTATTGGGGTCGACCATTTA,"Intron (Bnc2-201/Bnc2, intron 7 of 7)",4,84275095,84675034,399940,2,Bnc2-201,392636,Bnc2-201;Bnc2-202;Bnc2-214;Bnc2-218;Bnc2-215;Bnc2-222;Bnc2-216;Bnc2-213;Bnc2-219,Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,91,242509,ENSMUSG00000028487,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17276,cg09642734,0.0000173,0.000009,1.922910836,0.055407161,gain,ns,-0.0000189,0.0000153,-1.235281462,0.21766113,neg,ns,0.015050167,0.004479524,3.359769186,0.000877558,pos,ns,3.056724015,-0.000494272,0.00015405,-3.208504628,0.00147388,neg,ns,0.28523923,Zbtb7b,Zbtb7b_Intron,3,89388223,89388272,89388223,89388224,50,+,CGGCCCGGTTGGCACCTACCCACCAGGATGCTGGCAGTCCTGCCCTCCTC,"Intron (Zbtb7b-202/Zbtb7b, intron 1 of 2)",3,89377644,89392069,14426,2,Zbtb7b-202,3797,Zbtb7b-203;Zbtb7b-204;Zbtb7b-202;Zbtb7b-201;Zbtb7b-206;Zbtb7b-208;Zbtb7b-209;Zbtb7b-205;Zbtb7b-207,Zbtb7b;Zbtb7b;Zbtb7b;Zbtb7b;Zbtb7b;Zbtb7b;Zbtb7b;Zbtb7b;Zbtb7b,0;0;0;0;0;0;0;0;6504,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,12,22724,ENSMUSG00000028042,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8506,cg19451261,0.0000194,0.0000111,1.743964057,0.082156584,gain,ns,0.0000234,0.0000189,1.235266875,0.217666549,pos,ns,0.014470055,0.005548289,2.60802138,0.009547639,pos,ns,2.020104029,-0.000394918,0.000190805,-2.069747019,0.039304108,neg,ns,0.653987124,Lbx1,Lbx1_Intergenic_upstream,19,45248834,45248883,45248834,45248835,50,-,CGTGGAGGGTGTCAGGGGTGGTATTGTCGGCGCACAAATGCTCAACTTTA,Distal Intergenic,19,45232684,45235812,3129,2,Lbx1-201,-13071,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,15,50,16814,ENSMUSG00000025216,mapped to different genes,19,45248766,45248862,97,*,97,10,0.659793814,1.010416667,0.103092784,4.63E-08,CpGisland,TRUE,NA,NRS
27067,cg22047293,-0.0000695,0.0000141,-4.933185424,0.00000132,loss,yes,-0.0000296,0.0000239,-1.235257326,0.217670097,neg,ns,0.012378972,0.007011856,1.765434352,0.078475229,pos,ns,1.10526741,-0.001418304,0.000241137,-5.881732563,1.05E-08,neg,yes,0.572674617,Blcap,Blcap_Exon,2,157561235,157561284,157561283,157561284,50,-,ACTGGGTAGGATTCGCTTTTCGAAATCCTCCAGGGACACAGCCCATTGCG,"Exon (Nnat-208/Nnat, exon 2 of 3)",2,157556362,157566337,9976,2,Blcap-202,5053,Blcap-202;Blcap-201;Blcap-205;Blcap-204;Blcap-203;Nnat-205;Nnat-208;Nnat-202;Nnat-210;Nnat-207;Nnat-209;Nnat-206;Nnat-201;Nnat-204;Nnat-203,Blcap;Blcap;Blcap;Blcap;Blcap;Nnat;Nnat;Nnat;Nnat;Nnat;Nnat;Nnat;Nnat;Nnat;Nnat,0;0;0;0;5047;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,9,53619,ENSMUSG00000067787,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8812,cg09763978,0.0000844,0.0000142,5.957892395,6.93E-09,gain,yes,-0.0000297,0.0000241,-1.235160476,0.217706082,neg,ns,0.01898775,0.00705387,2.691820217,0.007492263,pos,ns,2.125387004,-0.000450318,0.000242582,-1.856354874,0.064351636,neg,ns,0.345323007,Gm13466,Gm13466_Intergenic_downstream,2,45836687,45836736,45836735,45836736,50,+,ATTAAGTTCAGTGTTGCCAACCCAAACAAAGTATAATCAGCGATGATCCG,Distal Intergenic,2,45809472,45810470,999,1,Gm13466-201,27215,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,9,666604,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3886,cg21723486,0.00000522,0.00000505,1.033448291,0.302199696,gain,ns,0.0000106,0.00000858,1.235113187,0.217723654,pos,ns,-0.00237251,0.002513656,-0.943848205,0.345982237,neg,ns,0.460946198,0.000144202,0.0000864,1.668146273,0.096296401,pos,ns,0.906316549,Trp63,Trp63_Exon,16,25684308,25684357,25684308,25684309,50,+,CGGTGTGCCACCCTACAGTACTGCCCTGACCCTTACATCCAGCGGTGAGT,Promoter (<=1kb),16,25683763,25821318,137556,1,Trp63-206,545,Trp63-206;Trp63-207;Trp63-202;Trp63-208,Trp63;Trp63;Trp63;Trp63,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,8,22061,ENSMUSG00000022510,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22137,cg02867809,0.0000693,0.0000198,3.497045335,0.000539191,gain,ns,-0.0000416,0.0000337,-1.235060618,0.217743189,neg,ns,0.016119171,0.009868838,1.633340288,0.103412637,pos,ns,0.985426386,-0.000867282,0.000339389,-2.555424526,0.011082945,neg,ns,0.73355857,Pitpnb,Pitpnb_Intergenic_downstream,5,111394400,111394449,111394400,111394401,50,+,CGCTGAGACTGCATAACCATCTGCCATAAATTGAGACTAGTACGGCTTAT,Distal Intergenic,5,111380169,111383703,3535,1,Pitpnb-203,14231,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,3,56305,ENSMUSG00000050017,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2834,cg02545818,-0.00000221,0.00000151,-1.461539852,0.144880244,loss,ns,0.00000317,0.00000256,1.234990979,0.21776907,pos,ns,0.0000894,0.00075114,0.119039135,0.905321453,pos,ns,0.043197188,-0.00000919,0.0000258,-0.355668513,0.722330725,neg,ns,0.044749019,Gm43671,Gm43671_Intergenic_upstream,3,21936063,21936112,21936063,21936064,50,-,CGTGTAATAATACACAAACCCCTGATGATGTCAGCGTGTTATTGACTTTC,Distal Intergenic,3,22021197,22021629,433,1,Gm43671-201,-85134,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,3,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10474,cg15218687,-0.0000328,0.00000615,-5.328178226,0.000000191,loss,yes,0.0000129,0.0000104,1.234968601,0.217777387,pos,ns,-0.002804726,0.003060876,-0.916314865,0.360214038,neg,ns,0.443439366,-0.0000866,0.000105263,-0.822595815,0.411370165,neg,ns,0.826261303,Npas3,Npas3_Intron,12,53802488,53802537,53802488,53802489,50,+,CGTGGTCAGGCCCTGTGTGATTTCAAGAGACGTTTCACTTTAGAATTCTT,"Intron (Npas3-204/Npas3, intron 3 of 10)",12,53248157,54069532,821376,1,Npas3-204,554331,Npas3-204;Npas3-201;Npas3-203,Npas3;Npas3;Npas3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,83,103,27386,ENSMUSG00000021010,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19941,cg10887670,0.0000686,0.0000225,3.050914455,0.002478593,gain,ns,-0.0000471,0.0000382,-1.23488803,0.217807334,neg,ns,0.009024958,0.011183917,0.806958583,0.420309024,pos,ns,0.376431286,-0.001252963,0.000384614,-3.257714725,0.001247715,neg,ns,0.453445772,Pik3r1,Pik3r1_fiveUTR,13,101692335,101692384,101692335,101692336,50,-,CGGCTTTCTTTGTAATGGTGTCTTGGAATTCATTTTAAAACCTATAAGGG,Promoter (<=1kb),13,101690135,101692343,2209,2,Pik3r1-207,0,Pik3r1-202;Pik3r1-201;Pik3r1-205;Pik3r1-204;Pik3r1-207,Pik3r1;Pik3r1;Pik3r1;Pik3r1;Pik3r1,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,1,18708,ENSMUSG00000041417,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26047,cg16225239,-0.00000826,0.00000457,-1.805973302,0.071892348,loss,ns,0.00000959,0.00000777,1.234878668,0.217810814,pos,ns,0.002193245,0.002275072,0.96403323,0.335780671,pos,ns,0.473944308,-0.000130685,0.0000782,-1.670315241,0.095866311,neg,ns,0.568051841,Etnk1,Etnk1_Intergenic_downstream,6,143414758,143414807,143414806,143414807,50,-,TAAAATAGCTCAGAGTTTGGCTCTCACTTTTAAATACTATGCAGATGGCG,Distal Intergenic,6,143167254,143192282,25029,1,Etnk1-202,247553,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,10,75320,ENSMUSG00000030275,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15561,cg07274932,-0.00000287,0.00000766,-0.374239606,0.70848191,loss,ns,0.0000161,0.000013,1.234851087,0.217821067,pos,ns,0.003133453,0.003811765,0.822047874,0.41168146,pos,ns,0.385438691,0.00000349,0.000131086,0.026631352,0.978770902,pos,ns,0.834490027,Adgrl3,Adgrl3_Exon,5,81792354,81792403,81792354,81792355,50,+,CGTTTAGAGCCCTACAGAGAGACAAGTATGGGAGTAAAGCTAAACATTGC,"Exon (Adgrl3-203/Adgrl3, exon 27 of 27)",5,81020571,81796634,776064,1,Adgrl3-223,771783,Adgrl3-223;Adgrl3-203;Adgrl3-211;Adgrl3-217;Adgrl3-232;Adgrl3-207;Adgrl3-205;Adgrl3-206;Adgrl3-208;Adgrl3-212;Adgrl3-213;Adgrl3-214;Adgrl3-215;Adgrl3-216;Adgrl3-209;Adgrl3-218;Adgrl3-219;Adgrl3-204;Adgrl3-210;Adgrl3-201;Adgrl3-202;Adgrl3-220;Adgrl3-229;Adgrl3-235,Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,13,319387,ENSMUSG00000037605,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19368,cg23045418,-0.00000237,0.00000447,-0.53011118,0.596414333,loss,ns,0.00000939,0.0000076,1.234784143,0.217845952,pos,ns,-0.001083892,0.002226742,-0.486761168,0.626771559,neg,ns,0.202890719,-0.0000234,0.0000766,-0.306183405,0.759670535,neg,ns,0.92512186,Cdh8,Cdh8_Exon,8,99111664,99111713,99111712,99111713,50,-,TATTTACTTGGCCGGGTTTTCCATTTTCACATAAAAATGCCTCATATTCG,"Exon (Cdh8-207/Cdh8, exon 9 of 13)",8,99024471,99416427,391957,2,Cdh8-207,304714,Cdh8-207;Cdh8-204;Cdh8-201;Cdh8-206;Cdh8-203,Cdh8;Cdh8;Cdh8;Cdh8;Cdh8,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,16,12564,ENSMUSG00000036510,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24890,cg12870762,0.0000586,0.00000731,8.009052684,2.36E-14,gain,yes,0.0000153,0.0000124,1.234515364,0.217945888,pos,ns,0.013109556,0.003639741,3.601782788,0.000367945,pos,ns,3.434216917,-0.000228749,0.00012517,-1.827499727,0.06858585,neg,ns,0.210981812,Pitx2,Pitx2_threeUTR,3,129218783,129218832,129218831,129218832,50,+,CCTGGCCAGCCTGAGACTGAAAGCAAAGCAGCACTCCAGCTTCGGCTACG,3' UTR,3,129199878,129219590,19713,1,Pitx2-207,18905,Pitx2-207;Pitx2-201;Pitx2-203;Pitx2-204;Pitx2-208;Pitx2-202;Pitx2-206,Pitx2;Pitx2;Pitx2;Pitx2;Pitx2;Pitx2;Pitx2,0;0;0;0;0;0;4508,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,7,24,18741,ENSMUSG00000028023,mapped to different genes,3,129218825,129218932,108,*,108,13,0.694444444,0.998577525,0.12037037,2.57E-11,CpGisland,TRUE,U13,Hc-P
3434,cg15091323,0.0000244,0.00000216,11.28567834,5.63E-25,gain,yes,-0.00000454,0.00000368,-1.234374766,0.217998177,neg,ns,0.00274575,0.001077051,2.549320868,0.011274678,pos,ns,1.947895845,0.000048,0.000037,1.296084804,0.195910363,pos,ns,0.079312406,Bcl11a,Bcl11a_fiveUTR,11,24078279,24078328,24078327,24078328,50,+,GATGAAGATATTTTCTCTGGAGTCTCCTTCTTTCTAACCCGGCTCTCCCG,Promoter (<=1kb),11,24078056,24173194,95139,1,Bcl11a-201,223,A830031A19Rik-201;Bcl11a-201;Bcl11a-203;Bcl11a-205;Bcl11a-202;Bcl11a-204,A830031A19Rik;Bcl11a;Bcl11a;Bcl11a;Bcl11a;Bcl11a,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,10,98,14025,ENSMUSG00000000861,conserved gene and region,11,24078318,24078446,129,*,129,20,0.705426357,1.347962382,0.15503876,8.63E-20,CpGisland,TRUE,NA,NRS
12784,cg08663870,-0.00000379,0.00000101,-3.737099517,0.000221591,loss,ns,0.00000213,0.00000172,1.234294275,0.218028117,pos,ns,-0.000301451,0.000504396,-0.59764813,0.550511059,neg,ns,0.259233952,0.0000236,0.0000173,1.359900213,0.174849689,pos,ns,0.034331111,Jmjd1c,Jmjd1c_fiveUTR,10,67185881,67185930,67185881,67185882,50,-,CGAGAGAAATTATCCTGACCCAGATCGGAGGATGCAGTAGTGCTTCAGCT,5' UTR,10,67096125,67191748,95624,1,Jmjd1c-209,89756,Jmjd1c-209;Jmjd1c-210;Jmjd1c-211;Jmjd1c-201;Jmjd1c-212;Jmjd1c-205;Jmjd1c-206;Jmjd1c-208,Jmjd1c;Jmjd1c;Jmjd1c;Jmjd1c;Jmjd1c;Jmjd1c;Jmjd1c;Jmjd1c,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,9,108829,ENSMUSG00000037876,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
21099,cg26347591,0.0000285,0.00000365,7.813707266,8.70E-14,gain,yes,-0.00000765,0.0000062,-1.233957191,0.21815353,neg,ns,0.00636669,0.001817105,3.503754748,0.000526295,pos,ns,3.278770764,-0.0000959,0.0000625,-1.535175709,0.125760629,neg,ns,0.08418715,Barhl2,Barhl2_Promoter,5,106459632,106459681,106459632,106459633,50,+,CGTGTCAACCTAATTAGCAGAGTAATTATAAGGTGCTAATGAATGATTCA,Promoter (1-2kb),5,106452523,106458166,5644,2,Barhl2-201,-1466,Barhl2-201,Barhl2,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,8,27,104382,ENSMUSG00000034384,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
9124,cg00731079,-0.0000214,0.00000296,-7.213724675,4.20E-12,loss,yes,0.00000621,0.00000503,1.233907355,0.218172076,pos,ns,-0.003594822,0.001473492,-2.43966272,0.015261289,neg,ns,1.816408789,0.000104891,0.0000507,2.069944923,0.039285439,pos,ns,0.954883989,Samd4,Samd4_Exon,14,47052915,47052964,47052963,47052964,50,-,GTGCCAAACCAGCCTCTAGGACATGGATGGATGTCTCATGAGGACTTACG,"Exon (Samd4-201/Samd4, exon 4 of 13)",14,46882854,47103150,220297,1,Samd4-201,170061,Samd4-201;Samd4-211;Samd4-202;Samd4-206;Samd4-203,Samd4;Samd4;Samd4;Samd4;Samd4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,16,74480,ENSMUSG00000021838,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4286,cg02375248,0.000000332,0.000000434,0.765845768,0.444350796,gain,ns,-0.000000909,0.000000737,-1.233790165,0.218215692,neg,ns,-0.000385686,0.000215932,-1.786140813,0.075053724,neg,ns,1.124627752,0.00000332,0.00000743,0.447048038,0.655152548,pos,ns,0.992746672,Dyrk1b,Dyrk1b_Exon,7,28185812,28185861,28185812,28185813,50,-,CGCCGACTACCTCCGCTTCCAGGACCTGGTGCTGCGCATGCTGGAGTATG,"Exon (Dyrk1b-201/Dyrk1b, exon 9 of 11)",7,28179469,28187294,7826,1,Dyrk1b-201,6343,Dyrk1b-201;Dyrk1b-203;Dyrk1b-202,Dyrk1b;Dyrk1b;Dyrk1b,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,8,13549,ENSMUSG00000002409,conserved gene and region,7,28185735,28186008,274,*,274,29,0.748175183,0.761548783,0.105839416,3.86E-23,CpGisland,TRUE,U10,Tr-S
25566,cg09299803,-0.00000276,0.00000449,-0.615433437,0.538720057,loss,ns,0.00000941,0.00000763,1.233737434,0.218235319,pos,ns,0.007226471,0.002234453,3.234111347,0.001351843,pos,ns,2.869073893,-0.000285406,0.0000768,-3.714158191,0.000241741,neg,ns,0.900832433,Ebf3,Ebf3_Intron,7,137238669,137238718,137238669,137238670,50,+,CGATAAAAATTCTAACCTGTCATTAGTACATTATGCTTAATTGTGTACAG,"Intron (Gm10578-201/Gm10578-201, intron 2 of 2)",7,137193673,137314445,120773,2,Ebf3-204,75727,Ebf3-204;Ebf3-201;Ebf3-202;Ebf3-203;Ebf3-208;Ebf3-205,Ebf3;Ebf3;Ebf3;Ebf3;Ebf3;Ebf3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,62,84,13593,ENSMUSG00000010476,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25837,cg06404927,-0.0000189,0.0000163,-1.158974352,0.247358615,loss,ns,0.0000342,0.0000277,1.233578062,0.218294648,pos,ns,0.002835132,0.00812564,0.348911851,0.727392351,pos,ns,0.13823127,0.0000902,0.00027944,0.322859117,0.747019595,pos,ns,0.212797259,Uncx,Uncx_Intergenic_downstream,5,139600136,139600185,139600184,139600185,50,-,ACCATTAAATAGTGGATTAAATTGATGGCACTTTCATTGTCTGTCCTTCG,Distal Intergenic,5,139543898,139545268,1371,1,Uncx-202,56287,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,59,88,22255,ENSMUSG00000029546,conserved gene and region,5,139600164,139600348,185,*,185,12,0.583783784,0.767900381,0.064864865,0.000000254,CpGisland,TRUE,U13,Hc-P
23251,cg04264144,0.0000714,0.0000138,5.17209245,0.000000416,gain,yes,-0.0000289,0.0000235,-1.233488162,0.218328121,neg,ns,0.023884932,0.006873534,3.474912655,0.000583858,pos,ns,3.233692876,-0.000497989,0.00023638,-2.106729307,0.03594435,neg,ns,0.321269036,Eri3,Eri3_Intron,4,117608369,117608418,117608369,117608370,50,-,CGCAGGTGACGGCCTTTCATCTGTACTATAGGGAAACCAAGAGGAAATTA,"Intron (Eri3-201/Eri3, intron 6 of 8)",4,117550365,117674297,123933,1,Eri3-201,58004,Eri3-201;Eri3-206;Eri3-202;Eri3-204,Eri3;Eri3;Eri3;Eri3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,82,97,140546,ENSMUSG00000033423,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15353,cg03811496,-0.00000292,0.000000864,-3.38118984,0.000814173,loss,ns,0.00000181,0.00000147,1.233450597,0.218342108,pos,ns,0.001053502,0.000430115,2.449351935,0.014864554,pos,ns,1.827848109,-0.0000274,0.0000148,-1.855216414,0.064514487,neg,ns,0.972452456,Psmd11,Psmd11_threeUTR,11,80471700,80471749,80471748,80471749,50,-,TCTCTTGCAGAGTTGGATCTGTAGCGGTCCTTTGGAGAGTGTGTGTGGCG,3' UTR,11,80428623,80471909,43287,1,Psmd11-214,43077,Psmd11-214;Psmd11-201;Psmd11-204;Psmd11-215;Psmd11-209;Psmd11-205;Psmd11-203;Psmd11-213;Psmd11-202,Psmd11;Psmd11;Psmd11;Psmd11;Psmd11;Psmd11;Psmd11;Psmd11;Psmd11,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,TRUE,FALSE,threeUTR,4,4,69077,ENSMUSG00000017428,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7464,cg15530391,-0.00000233,0.00000291,-0.802967267,0.422608852,loss,ns,0.00000609,0.00000494,1.233136347,0.218459146,pos,ns,0.000117477,0.00144718,0.081176817,0.93535372,pos,ns,0.029024122,-0.0000105,0.0000498,-0.211801131,0.832401367,neg,ns,0.483480374,Pou3f3,Pou3f3_threeUTR,1,42699885,42699934,42699933,42699934,50,+,TTTAATAAACAGACTTTTCAAAAGACGGCAATATAGAATTGTTAGATCCG,3' UTR,1,42694925,42703176,8252,1,Pou3f3-202,4960,Pou3f3-202;Pou3f3-201,Pou3f3;Pou3f3,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,5,37,18993,ENSMUSG00000045515,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
12747,cg08880986,-0.00000334,0.00000162,-2.062491435,0.039993794,loss,ns,0.0000034,0.00000275,1.233072991,0.218482747,pos,ns,0.001153092,0.000807114,1.428661075,0.154108456,pos,ns,0.81217353,-0.000011,0.0000278,-0.397856808,0.691009575,neg,ns,0.947524316,Rsrc1,Rsrc1_Intron,3,67036981,67037030,67037029,67037030,50,+,TGTGATAGATGGAAAAAGCTTCAACTACATGCTGGCCTTGGCTGGCGCCG,"Intron (Rsrc1-206/Rsrc1, intron 3 of 9)",3,66981390,67356559,375170,1,Rsrc1-206,55591,Rsrc1-206;Rsrc1-203;Rsrc1-208;Rsrc1-202;Rsrc1-201;Rsrc1-209;Rsrc1-205,Rsrc1;Rsrc1;Rsrc1;Rsrc1;Rsrc1;Rsrc1;Rsrc1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,37,66880,ENSMUSG00000034544,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20439,cg10102347,0.0000405,0.0000039,10.37678864,7.53E-22,gain,yes,-0.00000818,0.00000663,-1.232885013,0.218552784,neg,ns,0.00455082,0.001943448,2.341622049,0.019833176,pos,ns,1.702607726,-0.0000546,0.0000668,-0.816907758,0.414608486,neg,ns,0.081984576,Hoxc4,Hoxc4_threeUTR,15,103035758,103035807,103035758,103035759,50,-,CGAGATCGCCCACTCGCTGTGCCTCTCTGAGAGGCAGATCAAAATCTGGT,3' UTR,15,103018934,103036405,17472,1,Hoxc4-202,16824,Hoxc4-202;Hoxc4-201,Hoxc4;Hoxc4,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,17,91,15423,ENSMUSG00000075394,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
8377,cg03603629,0.000148321,0.0000176,8.407760636,1.54E-15,gain,yes,-0.0000369,0.00003,-1.23268921,0.218625754,neg,ns,0.034927249,0.008780114,3.977994765,0.0000866,pos,ns,4.062612193,-0.001020224,0.000301947,-3.378814765,0.000820984,neg,ns,0.391379216,Kazald1,Kazald1_Promoter,19,45067430,45067479,45067478,45067479,50,-,ATCAATACTTGTTCTCGGCTTAATTTCCATCTAATTGCTCTTTAACGACG,Promoter (7-8kb),19,45075241,45079289,4049,1,Kazald1-202,-7811,NA,NA,NA,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,3,8,107250,ENSMUSG00000025213,conserved gene but different region,19,45067445,45067726,282,*,282,17,0.620567376,0.62962963,0.060283688,1.14E-09,CpGisland,TRUE,U13,Hc-P
7634,cg21249517,-0.0000078,0.00000309,-2.526484108,0.012018564,loss,ns,0.00000647,0.00000525,1.232686137,0.218626899,pos,ns,-0.00052833,0.001537277,-0.343679101,0.731320609,neg,ns,0.135892188,-0.000017,0.0000529,-0.322262514,0.747471048,neg,ns,0.954202239,Bend3,Bend3_Exon,10,43511367,43511416,43511367,43511368,50,-,CGAGAACCTGCGCAAGCAGTACAACTGCAGCGGCTCCCTGGGCAAGAAGC,"Exon (Bend3-202/Bend3, exon 4 of 4)",10,43478831,43515396,36566,1,Bend3-202,32536,Bend3-202;Bend3-201;Bend3-204;Bend3-203,Bend3;Bend3;Bend3;Bend3,0;0;26133;18202,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,3,331623,ENSMUSG00000038214,conserved gene and region,10,43511284,43511645,362,*,362,30,0.635359116,0.830211758,0.082872928,1.32E-20,CpGisland,TRUE,NA,NRS
21351,cg21431269,0.00000683,0.00000254,2.684789184,0.007647968,gain,ns,-0.00000533,0.00000432,-1.232470416,0.218707312,neg,ns,0.001068189,0.001266333,0.843529079,0.399583022,pos,ns,0.398392973,-0.0000383,0.0000435,-0.878715843,0.380235945,neg,ns,0.958350714,Gm44277,Gm44277_Intergenic_upstream,6,107454724,107454773,107454772,107454773,50,-,GGTTAGAAGCAAGATCCTCAGAACGTGAAAATCAAATTCTATATAATCCG,Distal Intergenic,6,107503808,107504456,649,1,Gm44277-201,-49084,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19988,cg06898519,-0.0000154,0.00000639,-2.408015377,0.016623158,loss,ns,-0.0000134,0.0000109,-1.232446149,0.218716359,neg,ns,-0.004787968,0.003181098,-1.505130523,0.133308707,neg,ns,0.875141484,0.000056,0.000109398,0.512212202,0.608867225,pos,ns,0.895022626,Dusp3,Dusp3_Exon,11,101974845,101974894,101974893,101974894,50,+,AGACTTGACGTCCATCTTCTGCCGCATCATGAGGTAGGCGATAACTAGCG,"Exon (Dusp3-206/Dusp3, exon 3 of 3)",11,101971143,101983503,12361,2,Dusp3-206,8609,Dusp3-206;Dusp3-201;Dusp3-202;Dusp3-203;Dusp3-204;Dusp3-205,Dusp3;Dusp3;Dusp3;Dusp3;Dusp3;Dusp3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,72349,ENSMUSG00000003518,mapped to different genes,11,101974802,101974960,159,*,159,12,0.591194969,0.865306122,0.075471698,0.000000048,CpGisland,TRUE,U10,Tr-S
420,cg06669148,-0.00000585,0.00000251,-2.326234601,0.020650541,loss,ns,-0.00000526,0.00000427,-1.232399054,0.218733918,neg,ns,-0.001325486,0.001251194,-1.059376555,0.290253046,neg,ns,0.537223214,0.0000162,0.000043,0.376954186,0.706465555,pos,ns,0.939948636,Pcnx3,Pcnx3_Exon,19,5671615,5671664,5671615,5671616,50,+,CGTACTTGCTGGCTGTTACCTCCCAAGCCAGCCAGCGCTGCCCAAAGGCA,"Exon (Pcnx3-202/Pcnx3, exon 27 of 35)",19,5664635,5688908,24274,2,Pcnx3-202,17244,Pcnx3-202;Pcnx3-211;Pcnx3-201;Pcnx3-206;Pcnx3-210;Pcnx3-208,Pcnx3;Pcnx3;Pcnx3;Pcnx3;Pcnx3;Pcnx3,0;0;0;-4633;0;7913,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,7,104401,ENSMUSG00000054874,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11835,cg15287673,0.00000244,0.00000228,1.068916086,0.285939105,gain,ns,-0.00000477,0.00000387,-1.232075588,0.218854545,neg,ns,-0.000989319,0.001134324,-0.872166611,0.383792489,neg,ns,0.415903529,-0.0000402,0.000039,-1.030563801,0.303548785,neg,ns,0.931397984,Uaca,Uaca_Intergenic_downstream,9,61071194,61071243,61071194,61071195,50,+,CGCTTCCCCCACTGCTGTGGGTGGGCAAATGTATTCCTTGAATAATTTGA,Distal Intergenic,9,60866145,60870130,3986,1,Uaca-204,205049,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,7,72565,ENSMUSG00000034485,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8688,cg11490944,-0.00000314,0.00000458,-0.685308737,0.493661241,loss,ns,0.00000958,0.00000778,1.23207419,0.218855066,pos,ns,-0.002879673,0.002279127,-1.263498584,0.207359425,neg,ns,0.683276219,0.000139541,0.0000784,1.780337591,0.076000062,pos,ns,0.94439439,Poll,Poll_Intergenic_downstream,19,45549348,45549397,45549348,45549349,50,+,CGGCGGTCCCTGCTGTTCCCATCAAATTAATTAACCGCGCGCTATTGATG,Downstream (2-3kb),19,45552275,45560531,8257,2,Poll-201,11134,Poll-201,Poll,11134,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,16,16,56626,ENSMUSG00000025218,mapped to different genes,19,45549348,45549466,119,*,119,11,0.62184874,0.973958333,0.092436975,0.000000025,CpGisland,TRUE,NA,NRS
6075,cg10560122,0.0000337,0.00000406,8.291746865,3.44E-15,gain,yes,-0.00000851,0.0000069,-1.232025949,0.21887306,neg,ns,-0.001380284,0.002022714,-0.682392001,0.495500687,neg,ns,0.304955739,0.00012908,0.0000696,1.855641362,0.06445366,pos,ns,0.041690013,Psd2,Psd2_Intergenic_upstream,18,35938654,35938703,35938702,35938703,50,-,CTGCCTGGCTGCGGGACCCCGTTGCCAGGAGCAGTCAGGATGCGGCAGCG,Distal Intergenic,18,35964830,36014712,49883,1,Psd2-201,-26176,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,24,29,74002,ENSMUSG00000024347,mapped to different genes,18,35938492,35938793,302,*,302,33,0.751655629,0.779080675,0.109271523,9.13E-27,CpGisland,TRUE,U3,Pr-B
12532,cg07622002,0.00000707,0.00000799,0.885031979,0.376825329,gain,ns,-0.0000167,0.0000136,-1.232023469,0.218873985,neg,ns,0.0013752,0.003977733,0.345724509,0.729784259,pos,ns,0.136805508,-0.000157452,0.000136794,-1.151017866,0.250611905,neg,ns,0.694479463,Gm11218,Gm11218_Intergenic_upstream,4,64901687,64901736,64901687,64901688,50,-,CGCATTCAGACAAGCTGGACAAAGAACGTACAGTCTACATTCCCTGGCCT,Distal Intergenic,4,64856926,64858139,1214,2,Gm11218-201,-43597,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,100502689,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4524,cg24208420,-0.00000393,0.00000454,-0.865023171,0.387694962,loss,ns,0.0000095,0.00000771,1.23181374,0.218952228,pos,ns,0.004048285,0.002260233,1.791091793,0.074254026,pos,ns,1.129279996,-0.00011673,0.0000777,-1.501752369,0.134178963,neg,ns,0.904241694,Ccdc88a,Ccdc88a_Exon,11,29447956,29448005,29448004,29448005,50,+,TCTGCACAGTCACCCTGTGGTTCTCCAGGCATGAAGCGAACAGAAAGTCG,"Exon (Ccdc88a-201/Ccdc88a, exon 8 of 32)",11,29373658,29510808,137151,1,Ccdc88a-201,74298,Ccdc88a-201;Ccdc88a-208,Ccdc88a;Ccdc88a,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,6,108686,ENSMUSG00000032740,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20205,cg26354128,0.000101878,0.00000881,11.55848897,6.18E-26,gain,yes,-0.0000184,0.000015,-1.231706782,0.218992138,neg,ns,0.011050912,0.004386877,2.519084399,0.012268812,pos,ns,1.911197485,-0.000166465,0.000150864,-1.103406782,0.27070635,neg,ns,0.034777383,Unc79,Unc79_fiveUTR,12,102949373,102949422,102949373,102949374,50,+,CGAATTCTGCAATTTGATGTGCGTTTTGTCCGAATGGTAGCGACACGGGC,Promoter (<=1kb),12,102948859,103184001,235143,1,Unc79-202,514,Unc79-202;Unc79-208,Unc79;Unc79,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,12,24,217843,ENSMUSG00000021198,conserved gene and region,12,102948810,102949512,703,*,703,59,0.644381223,0.809149434,0.083926031,2.91E-40,CpGisland,TRUE,NA,NRS
1683,cg04589887,0.0000321,0.00000944,3.40481319,0.000749232,gain,ns,-0.0000198,0.000016,-1.231700614,0.21899444,neg,ns,-0.006856624,0.004698034,-1.459466605,0.145449291,neg,ns,0.837288392,0.000163262,0.000161565,1.010505763,0.313041106,pos,ns,0.502860439,Eya1,Eya1_Intergenic_upstream,1,14465062,14465111,14465062,14465063,50,-,CGGAACAATGGTCCAGAAAACTCAGCAAAAAAGAAAATAAACTTCATTGG,Distal Intergenic,1,14168958,14310235,141278,2,Eya1-203,-154876,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,4,14048,ENSMUSG00000025932,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6482,cg07867530,-0.0000019,0.00000196,-0.96752064,0.334038038,loss,ns,0.0000041,0.00000333,1.23166348,0.219008297,pos,ns,0.001866546,0.000974982,1.914441858,0.056484077,pos,ns,1.248073967,-0.0000875,0.0000335,-2.608662172,0.009530171,neg,ns,0.949430081,Zbtb26,Zbtb26_Exon,2,37436637,37436686,37436637,37436638,50,+,CGTTCTACAATGTGGCTCATCTGAAGAAAACTTGCAGCAGTCAAGTAATT,"Exon (Zbtb26-201/Zbtb26, exon 2 of 2)",2,37432168,37443121,10954,2,Zbtb26-201,6435,Zbtb26-201;Zbtb26-202;Zbtb26-203;Zbtb6-202,Zbtb26;Zbtb26;Zbtb26;Zbtb6,0;0;6449;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,320633,ENSMUSG00000050714,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7080,cg23007999,0.0000199,0.0000139,1.428327945,0.154204202,gain,ns,0.0000291,0.0000236,1.231375969,0.21911561,pos,ns,0.014861265,0.006927145,2.145366702,0.032700119,pos,ns,1.48545067,-0.000346864,0.000238224,-1.456043385,0.146392629,neg,ns,0.631080438,Hspa8,Hspa8_Intergenic_downstream,9,40827781,40827830,40827829,40827830,50,+,TCTGTTAGAGAATCAGTGAGGTGCTTGATGAAGCCATTAACTGGGGTTCG,Distal Intergenic,9,40804484,40810087,5604,1,Hspa8-210,23297,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,3,15481,ENSMUSG00000015656,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9129,cg22403041,-0.00000366,0.00000112,-3.273754612,0.001181256,loss,ns,0.00000234,0.0000019,1.231373075,0.219116691,pos,ns,0.001157039,0.000556286,2.079935977,0.038352736,pos,ns,1.416203649,-0.0000365,0.0000191,-1.908949503,0.057191801,neg,ns,0.033099654,Taf5,Taf5_Exon,19,47067775,47067824,47067823,47067824,50,-,TGGCGGAGGAGCAGACGGAGGTGGCGGTCAAGCTAGAGCCTGAGGGACCG,Promoter (<=1kb),19,47067746,47083479,15734,1,Taf5-201,29,Taf5-201,Taf5,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,10,226182,ENSMUSG00000025049,conserved gene and region,19,47067495,47068485,991,*,991,110,0.696266398,0.916628127,0.110998991,8.88E-89,CpGisland,TRUE,U1,Pr-A
15309,cg14799760.1,-0.0000705,0.0000106,-6.64374231,1.37E-10,loss,yes,-0.0000222,0.000018,-1.231347925,0.21912608,neg,ns,0.025483863,0.005284952,4.821967051,0.00000223,pos,ns,5.651427375,-0.001374074,0.000181749,-7.560283622,4.59E-13,neg,yes,0.716882864,Dazap1,Dazap1_Exon,10,80280919,80280968,80280919,80280920,50,-,CGTTGGCTAGGTTTTGGATTTATTACTTTCGAGGACGAACAATCAGTGGA,"Exon (Dazap1-207/Dazap1, exon 7 of 7)",10,80261486,80281005,19520,1,Dazap1-207,19433,Dazap1-207;Dazap1-203;Dazap1-202;Dazap1-201;Dazap1-205;Dazap1-204;Dazap1-206,Dazap1;Dazap1;Dazap1;Dazap1;Dazap1;Dazap1;Dazap1,0;0;0;0;15795;0;-1899,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,6,70248,ENSMUSG00000069565,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U5,En-Sd
600,cg05985562,-0.00000758,0.00000892,-0.849533968,0.396239827,loss,ns,0.0000187,0.0000152,1.231304314,0.219142361,pos,ns,-0.005907677,0.004438642,-1.33096493,0.184178607,neg,ns,0.734760815,0.000157417,0.000152645,1.031264987,0.303220468,pos,ns,0.887154154,Clcn5,Clcn5_threeUTR,X,7154075,7154124,7154123,7154124,50,-,CAATTAACACTATCCCCATTTTGCAGATGGGAACACTGAGGCACAGAGCG,3' UTR,20,7153810,7188714,34905,2,Clcn5-201,34590,Clcn5-201,Clcn5,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,3,12728,ENSMUSG00000004317,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22770,cg19805679,0.0000527,0.0000122,4.304561988,0.0000225,gain,ns,0.0000256,0.0000208,1.23121218,0.219176762,pos,ns,0.001156651,0.006093624,0.189813365,0.849579609,pos,ns,0.07079592,0.000316284,0.000209559,1.509281318,0.132245427,pos,ns,0.788143749,Dmbx1,Dmbx1_Intron,4,115932090,115932139,115932138,115932139,50,-,ACAGGCGCCATATAGATGGCTTTAATTTTCCAAATCTGCAAATGCATCCG,"Intron (Dmbx1-203/Dmbx1, intron 1 of 4)",4,115915119,115939926,24808,2,Dmbx1-203,7787,Dmbx1-203;Dmbx1-202,Dmbx1;Dmbx1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,42,140477,ENSMUSG00000028707,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
25933,cg20946331,-0.0000017,0.00000522,-0.325210289,0.745241297,loss,ns,-0.0000109,0.00000887,-1.230976642,0.219264722,neg,ns,-0.001194275,0.002599723,-0.459385261,0.646279502,neg,ns,0.189579618,0.00000955,0.0000894,0.106790251,0.915024456,pos,ns,0.785096305,Macrod2,Macrod2_Intron,2,141344325,141344374,141344325,141344326,50,-,CGTGATTGAGGTTAAGAGCCTGTGAATGTTTGGAGAATACTTGTTTATAG,"Intron (Macrod2-207/Macrod2, intron 5 of 16)",2,140395309,142392966,1997658,1,Macrod2-207,949016,Macrod2-207;Macrod2-206;Macrod2-202,Macrod2;Macrod2;Macrod2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,5,72899,ENSMUSG00000068205,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9183,cg07445154,0.0000186,0.00000379,4.890207589,0.00000162,gain,yes,-0.00000793,0.00000644,-1.230931987,0.219281401,neg,ns,0.002651387,0.001888085,1.404273061,0.161238635,pos,ns,0.792530887,-0.000144435,0.0000649,-2.224439663,0.026838727,neg,ns,0.041995247,Cadm1,Cadm1_Intergenic_upstream,9,47422384,47422433,47422384,47422385,50,-,CGGAAATTAAGCACAGTGTCATGGCCATTTAGGACATTAGGAACGGAAGG,Distal Intergenic,9,47530173,47853385,323213,1,Cadm1-204,-107789,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,18,77,54725,ENSMUSG00000032076,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20927,cg23106587,0.0000388,0.00001,3.868343941,0.000133574,gain,ns,0.000021,0.000017,1.230922574,0.219284917,pos,ns,0.001571272,0.00498807,0.315005931,0.752969079,pos,ns,0.123222858,0.0005318,0.000171539,3.100162285,0.002111705,pos,ns,0.755696278,Elp4,Elp4_Intron,2,105719523,105719572,105719523,105719524,50,-,CGTTGAATAATACACATGATTAGTAATTTGTAGCTGTGGATCAGGGGTTC,"Intron (Elp4-202/Elp4, intron 9 of 9)",2,105701027,105904564,203538,2,Elp4-202,184992,Elp4-202,Elp4,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,16,77766,ENSMUSG00000027167,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16108,cg24582152,0.0000877,0.0000169,5.194077981,0.000000373,gain,yes,-0.0000353,0.0000287,-1.230713324,0.219363086,neg,ns,0.022533389,0.00840489,2.680985393,0.007733414,pos,ns,2.111628716,-0.00050452,0.000289043,-1.745480453,0.081892041,neg,ns,0.28232276,Zfp407,Zfp407_Intron,18,84414539,84414588,84414587,84414588,50,-,TTGAAATTTGGCAACAATGTCAGCCAGAGCAAACAGCTGTTATTTTAACG,"Intron (Zfp407-201/Zfp407, intron 2 of 2)",18,84128027,84558425,430399,2,Zfp407-201,143837,Zfp407-201;Zfp407-202;Zfp407-203,Zfp407;Zfp407;Zfp407,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,32,240476,ENSMUSG00000048410,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12650,cg09114321,0.000107391,0.0000161,6.659071388,1.25E-10,gain,yes,-0.0000337,0.0000274,-1.230691444,0.219371261,neg,ns,0.023772911,0.008026554,2.961783072,0.003295066,pos,ns,2.482135827,-0.000584967,0.000276033,-2.119196405,0.034868637,neg,ns,0.39012213,Herc1,Herc1_Exon,9,66414313,66414362,66414313,66414314,50,+,CGTTGTGTATACAAAGTTCGAAGTCGTTTACTTGCTTGCAAGAACCTTGA,"Exon (Herc1-201/Herc1, exon 21 of 78)",9,66350526,66508775,158250,1,Herc1-201,63787,Herc1-201,Herc1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,15,15,235439,ENSMUSG00000038664,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12851,cg00522402,0.0000011,0.00000223,0.494668687,0.621184393,gain,ns,-0.00000466,0.00000379,-1.230665194,0.219381069,neg,ns,-0.00054128,0.001110199,-0.487552127,0.626211719,neg,ns,0.203278809,-0.00000771,0.0000382,-0.201941783,0.840094692,neg,ns,0.948631232,Rsrc1,Rsrc1_Intron,3,67340967,67341016,67340967,67340968,50,+,CGGGGAAAAATCTCCTGCGAGACAAGGGTAAATTGAGCATTGAATTACAT,"Intron (Rsrc1-206/Rsrc1, intron 7 of 9)",3,66981390,67356559,375170,1,Rsrc1-206,359577,Rsrc1-206;Rsrc1-203;Rsrc1-202;Rsrc1-201;Rsrc1-209;Rsrc1-205,Rsrc1;Rsrc1;Rsrc1;Rsrc1;Rsrc1;Rsrc1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,37,66880,ENSMUSG00000034544,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14619,cg19650300,-0.00000586,0.00000243,-2.413897912,0.016362184,loss,ns,0.00000507,0.00000412,1.23052589,0.219433124,pos,ns,0.000624823,0.001207725,0.517354951,0.605277351,pos,ns,0.218045577,-0.0000558,0.0000415,-1.342444481,0.180434155,neg,ns,0.949020738,Nr3c2,Nr3c2_Exon,8,76908275,76908324,76908323,76908324,50,-,GAGACCAAAGGCTACCACAGTCTCCCTGAAGGTCTAGATATGGAAAGACG,"Exon (Nr3c2-207/Nr3c2, exon 2 of 2)",8,76899442,76908413,8972,1,Nr3c2-207,8833,Nr3c2-207;Nr3c2-204;Nr3c2-208;Nr3c2-203;Nr3c2-206;Nr3c2-202;Nr3c2-201,Nr3c2;Nr3c2;Nr3c2;Nr3c2;Nr3c2;Nr3c2;Nr3c2,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,4,110784,ENSMUSG00000031618,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8237,cg21516079,0.0000247,0.0000233,1.06062937,0.289684004,gain,ns,0.0000487,0.0000395,1.230507224,0.219440099,pos,ns,0.002261558,0.011583552,0.195238759,0.845333939,pos,ns,0.072971695,0.000456537,0.000398357,1.146048037,0.25265916,pos,ns,0.561512818,Slf2,Slf2_Intergenic_upstream,19,44893731,44893780,44893731,44893732,50,+,CGCTATTGGCAGGAAGACAGAATAAGTTAGGGTGGCCATGTTTCAAAAAT,Distal Intergenic,19,44931151,44983188,52038,1,Slf2-201,-37371,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,15,17,226151,ENSMUSG00000036097,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16898,cg14009531,0.0000336,0.00000775,4.332967492,0.0000199,gain,ns,-0.0000162,0.0000132,-1.230432697,0.219467952,neg,ns,-0.002730756,0.003859305,-0.707577066,0.479739545,neg,ns,0.318994481,0.0000509,0.000132721,0.38382179,0.701373651,pos,ns,0.690529596,Ecel1,Ecel1_Intergenic_upstream,1,87168850,87168899,87168898,87168899,50,-,CAGCTAATGGACCAATTTTTTAGCATTACGGAGATTTGGCCAATTTGGCG,Distal Intergenic,1,87147655,87156521,8867,2,Ecel1-204,-12378,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,13599,ENSMUSG00000026247,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13725,cg23579234,-0.00000113,0.00000154,-0.734690585,0.46308334,loss,ns,0.00000321,0.00000261,1.230428089,0.219469674,pos,ns,0.001571385,0.000764035,2.056692405,0.040552419,pos,ns,1.391983238,-0.0000615,0.0000263,-2.338857652,0.019977892,neg,ns,0.957450783,Gm4052,Gm4052_Intergenic_upstream,13,72265655,72265704,72265655,72265656,50,-,CGCTTCAGCCTTGGCACCAGTAGGCGAAAATTATGTGCATAAATAATATC,Distal Intergenic,13,72350221,72350671,451,1,Gm4052-201,-84566,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,16,16,100042828,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3183,cg13819633,0.00000288,0.00000312,0.923248825,0.356595583,gain,ns,-0.00000652,0.0000053,-1.230216374,0.219548813,neg,ns,-0.000826523,0.001553351,-0.532090278,0.595044596,neg,ns,0.225450484,-0.0000655,0.0000534,-1.226658992,0.220881638,neg,ns,0.026626232,Klf9,Klf9_Exon,19,23142165,23142214,23142165,23142166,50,+,CGCCTCCGAAAAGAGGCACAAGTGCCCCTACAGTGGCTGTGGGAAAGTCT,Promoter (<=1kb),19,23141226,23168134,26909,1,Klf9-201,939,Klf9-201;Klf9-202,Klf9;Klf9,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,13,16601,ENSMUSG00000033863,conserved gene and region,19,23141183,23142172,990,*,990,120,0.684848485,1.033789605,0.121212121,5.63E-102,CpGisland,TRUE,U1,Pr-A
15884,cg20407274,0.0000206,0.00000626,3.294684917,0.001099473,gain,ns,-0.0000131,0.0000106,-1.230099913,0.219592355,neg,ns,-0.010103373,0.003116472,-3.241926687,0.001316505,neg,ns,2.88057763,0.000305833,0.000107175,2.853578329,0.004613925,pos,ns,0.801442352,Ccdc171,Ccdc171_threeUTR,4,83742936,83742985,83742936,83742937,50,-,CGAGGCAAAGATGGAGCTGAGAAGAAAAGATCAATCTCTGCGTCAGCTCA,3' UTR,4,83525545,83864670,339126,1,Ccdc171-201,217391,Ccdc171-201;Ccdc171-206;Ccdc171-203;Ccdc171-205,Ccdc171;Ccdc171;Ccdc171;Ccdc171,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,9,320226,ENSMUSG00000052407,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24617,cg27657673,0.000000999,0.000000787,1.268692891,0.205502442,gain,ns,-0.00000164,0.00000134,-1.23004286,0.219613688,neg,ns,0.000216241,0.000391747,0.551991829,0.581351663,pos,ns,0.235561081,-0.00000389,0.0000135,-0.288866145,0.772876882,neg,ns,0.983296656,Kif5a,Kif5a_Exon,10,127234039,127234088,127234087,127234088,50,-,GCACTCACTTTCTTGACTCGAGTCGTGACGTCTTGAACGAACAGCTTGCG,"Exon (Kif5a-201/Kif5a, exon 22 of 29)",10,127225696,127263348,37653,2,Kif5a-201,29260,Kif5a-201;Kif5a-202;Kif5a-203,Kif5a;Kif5a;Kif5a,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,8,16572,ENSMUSG00000074657,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6130,cg07988062,-0.0000567,0.0000111,-5.130861708,0.00000051,loss,yes,0.0000231,0.0000188,1.229958164,0.21964536,pos,ns,0.013019374,0.005504816,2.365088165,0.018641319,pos,ns,1.729523351,-0.000681968,0.00018931,-3.6023837,0.00036713,neg,ns,0.761509004,Rpl17-ps9,Rpl17-ps9_Intergenic_downstream,7,36134224,36134273,36134272,36134273,50,-,TTGGGTACAACTGGTGCTTTGAAATTTGCTGTACTTTAATTTTTTCTTCG,Distal Intergenic,7,36118274,36118828,555,1,Rpl17-ps9-201,15999,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,22,100043872,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14392,cg15952588,-0.0000321,0.00000582,-5.522901141,7.06E-08,loss,yes,0.0000122,0.00000988,1.229945898,0.219649947,pos,ns,0.009487579,0.002895724,3.276409837,0.001170577,pos,ns,2.93159999,-0.000599562,0.0000996,-6.020680846,4.91E-09,neg,yes,0.167355719,Asic4,Asic4_Promoter,1,75447913,75447962,75447913,75447914,50,+,CGGGGAAGCAGCCGGGAGGCTAAATGAGGGAGATTATCACCCAACTGCAG,Promoter (2-3kb),1,75450436,75474340,23905,1,Asic4-202,-2474,Asic4-202;Asic4-201;Gmppa-201;Gmppa-202;Gmppa-205;Gmppa-207;Gmppa-203,Asic4;Asic4;Gmppa;Gmppa;Gmppa;Gmppa;Gmppa,0;0;11983;11970;6293;5747;5689,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,11,241118,ENSMUSG00000033007,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
18928,cg03071282,-0.0000108,0.0000196,-0.553529679,0.580299763,loss,ns,0.0000409,0.0000332,1.229906204,0.219664792,pos,ns,-0.011951489,0.00973805,-1.227297888,0.220641838,neg,ns,0.656312134,0.00045653,0.000334891,1.363221505,0.173801973,pos,ns,0.578987469,Dach1,Dach1_Intron,14,97960444,97960493,97960444,97960445,50,+,CGCATTTGCCCTTTCATAGAGATGGAAATATTATTAGAAAGGACATAAAC,"Intron (Dach1-201/Dach1, intron 3 of 10)",14,97786853,98169543,382691,2,Dach1-201,209050,Dach1-201;Dach1-202;Dach1-203,Dach1;Dach1;Dach1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,76,13134,ENSMUSG00000055639,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14218,cg00362487,0.000145779,0.0000156,9.348038035,1.83E-18,gain,yes,-0.0000326,0.0000265,-1.229854159,0.219684256,neg,ns,0.004397779,0.007761575,0.566609036,0.571389825,pos,ns,0.243067497,-0.0000377,0.00026692,-0.141356936,0.887679787,neg,ns,0.339619301,Onecut1,Onecut1_Intergenic_upstream,9,74846971,74847020,74847019,74847020,50,-,AATATTCTGCATTTAACATTTGAACTTCTCCTATCCGAGGCAGCAGGCCG,Distal Intergenic,9,74861921,74891781,29861,1,Onecut1-201,-14950,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,28,15379,ENSMUSG00000043013,conserved gene and region,9,74846816,74847046,231,*,231,14,0.584415584,0.709833187,0.060606061,4.34E-08,CpGisland,TRUE,NA,NRS
16602,cg18120675,0.0000201,0.0000033,6.077332017,3.58E-09,gain,yes,-0.00000689,0.00000561,-1.229854156,0.219684258,neg,ns,0.005131159,0.00164244,3.12410735,0.001952027,pos,ns,2.709514074,-0.000149679,0.0000565,-2.649970802,0.008462821,neg,ns,0.018815687,Six3,Six3_Exon,17,85621846,85621895,85621894,85621895,50,+,ACCATCTGGGACGGCGAGCAGAAGACGCATTGCTTCAAGGAGCGGACTCG,"Exon (Six3-202/Six3, exon 2 of 3)",17,85613608,85625222,11615,1,Six3-202,8238,Six3-202;Six3-203;Six3-201,Six3;Six3;Six3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,24,20473,ENSMUSG00000038805,conserved gene and region,17,85621728,85621907,180,*,180,19,0.672222222,0.934937124,0.105555556,2.86E-15,CpGisland,TRUE,U13,Hc-P
6611,cg12385547,0.0000297,0.00000365,8.137296152,9.89E-15,gain,yes,-0.00000763,0.0000062,-1.229782131,0.219711197,neg,ns,0.002132945,0.001817237,1.173729504,0.241404348,pos,ns,0.617254912,-0.0000905,0.0000625,-1.448859118,0.148387685,neg,ns,0.055450773,Msx1,Msx1_Promoter,5,37828075,37828124,37828123,37828124,50,-,GCGAGCCCCAAACAGTCCTCTTTAATAGAATGAATGTGCTATGAAAACCG,Promoter (3-4kb),5,37820485,37824583,4099,2,Msx1-201,-3541,Msx1-201;Msx1-202,Msx1;Msx1,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,8,14,17701,ENSMUSG00000048450,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
24783,cg17999879,0.00000175,0.00000113,1.555333287,0.120887002,gain,ns,0.00000236,0.00000192,1.229724867,0.219732617,pos,ns,0.00053099,0.000561271,0.946049023,0.344860396,pos,ns,0.462356678,-0.0000247,0.0000193,-1.277707541,0.202308551,neg,ns,0.013629079,Smarcc2,Smarcc2_Promoter,10,128458464,128458513,128458464,128458465,50,-,CGTCACGAACAGGATTCGAACCTGTGCGGGGAAACCCCATTGGATTTCGA,Promoter (<=1kb),10,128459248,128490482,31235,1,Smarcc2-205,-784,Smarcc2-205;Smarcc2-201;Smarcc2-202;Smarcc2-203;Smarcc2-206,Smarcc2;Smarcc2;Smarcc2;Smarcc2;Smarcc2,0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,6,16,68094,ENSMUSG00000025369,conserved gene and region,10,128458453,128458841,389,*,389,38,0.645244216,0.938658877,0.097686375,9.20E-29,CpGisland,TRUE,U2,Pr-W
19956,cg00495518,-0.00000565,0.00000314,-1.798169139,0.073123032,loss,ns,-0.00000657,0.00000534,-1.229376132,0.219863098,neg,ns,-0.003690326,0.001564562,-2.358696334,0.018959558,neg,ns,1.722171798,0.000131316,0.0000538,2.44058698,0.015223044,pos,ns,0.916740133,Clpb,Clpb_Intron,7,101746937,101746986,101746937,101746938,50,+,CGATCAGTGGTAGAAGTCAGGTTCTATCAATTATTACAGCAATTAGTCAA,"Intron (Clpb-201/Clpb, intron 5 of 15)",7,101663633,101790168,126536,1,Clpb-201,83304,Clpb-201;Clpb-202;Clpb-211;Clpb-208;Clpb-207;Clpb-210,Clpb;Clpb;Clpb;Clpb;Clpb;Clpb,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,21,21,20480,ENSMUSG00000001829,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
394,cg03198547,-0.00000159,0.00000062,-2.567593792,0.010709338,loss,ns,0.00000129,0.00000105,1.229160467,0.219943817,pos,ns,0.000359386,0.000308574,1.164666736,0.245049392,pos,ns,0.61074637,-0.0000202,0.0000106,-1.905191226,0.057680337,neg,ns,0.979918393,Zfhx4,Zfhx4_Intron,3,5357958,5358007,5357958,5357959,50,+,CGCAAATGACTGAATCGATAGGAAACCAGCCACTGCTGTTTAAGTGTATC,"Intron (Zfhx4-203/Zfhx4, intron 4 of 10)",3,5218526,5413165,194640,1,Zfhx4-203,139432,Zfhx4-203;Zfhx4-201;Zfhx4-205,Zfhx4;Zfhx4;Zfhx4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,27,77,80892,ENSMUSG00000025255,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9746,cg24646657,-0.00000123,0.000000721,-1.709722162,0.08831792,loss,ns,0.00000151,0.00000123,1.229149157,0.219948051,pos,ns,0.000520506,0.000358969,1.450002714,0.148068722,pos,ns,0.829536672,0.00000339,0.0000123,0.274298807,0.784037695,pos,ns,0.975737372,Plcl2,Plcl2_Exon,17,50607270,50607319,50607318,50607319,50,-,TACTTTATAAACTCATCTCATAATACATACTTAATAGAGGATCAGTTCCG,"Exon (Plcl2-201/Plcl2, exon 2 of 6)",17,50509403,50688484,179082,1,Plcl2-201,97867,Plcl2-201;Plcl2-202,Plcl2;Plcl2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,224860,ENSMUSG00000038910,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23001,cg15352279,-0.0000256,0.00000489,-5.232489307,0.000000309,loss,yes,0.0000102,0.0000083,1.229079748,0.219974035,pos,ns,-0.002616379,0.002432814,-1.075453613,0.283007988,neg,ns,0.548201306,0.0000373,0.0000837,0.445567895,0.656220408,pos,ns,0.870725229,Gm13991,Gm13991_Intergenic_upstream,2,116693930,116693979,116693978,116693979,50,+,TCTAAGTGCATTGAATTTCATTGTCCTACAGAACCATGCAGAGTTGAGCG,Distal Intergenic,2,116527843,116528490,648,2,Gm13991-201,-165440,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,20,433464,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17985,cg00752442,-0.00000955,0.00000853,-1.120428857,0.263398312,loss,ns,0.0000178,0.0000145,1.229005657,0.220001773,pos,ns,0.000570106,0.004243664,0.134342765,0.893218716,pos,ns,0.049042186,-0.000321794,0.000145939,-2.20498377,0.028189247,neg,ns,0.493720288,Car10,Car10_Intron,11,93250038,93250087,93250086,93250087,50,+,AGTGCTTCATACATAATTCAATTAACTGCCTTCACTCATCAGTATTAACG,"Intron (Car10-204/Car10, intron 3 of 4)",11,93098404,93368999,270596,1,Car10-204,151634,Car10-204;Car10-205;Car10-201;Car10-203;Car10-206,Car10;Car10;Car10;Car10;Car10,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,7,72605,ENSMUSG00000056158,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27119,cg12451099,0.0000193,0.00000753,2.559919063,0.010943625,gain,ns,-0.0000157,0.0000128,-1.228778127,0.220086973,neg,ns,0.002992351,0.003746494,0.79870681,0.425071916,pos,ns,0.371537587,-0.0000466,0.000128842,-0.361308454,0.718114991,neg,ns,0.130097904,Slc32a1,Slc32a1_Exon,2,158614188,158614237,158614188,158614189,50,+,CGCCTTCCTTAAGAACCTCAAGGCCGTGTCCAAGTTCAGTCTGCTGTGCA,"Exon (Slc32a1-201/Slc32a1, exon 2 of 2)",2,158610767,158615748,4982,1,Slc32a1-201,3421,Slc32a1-201,Slc32a1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,22348,ENSMUSG00000037771,conserved gene and region,2,158613825,158614993,1169,*,1169,98,0.609923011,0.908054723,0.083832335,2.46E-66,CpGisland,TRUE,NA,NRS
2134,cg24282486,-0.00000305,0.00000123,-2.478670862,0.013719122,loss,ns,0.00000257,0.00000209,1.228711763,0.220111828,pos,ns,0.000667837,0.000612851,1.089721866,0.276682035,pos,ns,0.558019039,0.00000219,0.0000211,0.103935599,0.917287665,pos,ns,0.036949948,Reps1,Reps1_Exon,10,18056010,18056059,18056058,18056059,50,+,TCTCTTCTCCTACTGCGACATTGAGAGCACCAAGAAGGTGGTGGTCAACG,Promoter (<=1kb),10,18055861,18125130,69270,1,Reps1-206,149,Reps1-206;Reps1-207;Reps1-201;Reps1-210;Reps1-211;Reps1-204,Reps1;Reps1;Reps1;Reps1;Reps1;Reps1,0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,19707,ENSMUSG00000019854,conserved gene and region,10,18055534,18056482,949,*,949,118,0.711275026,0.987896325,0.124341412,8.62E-102,CpGisland,TRUE,U1,Pr-A
4850,cg15363713,-0.0000157,0.00000536,-2.928354476,0.003660089,loss,ns,0.0000112,0.0000091,1.228678651,0.22012423,pos,ns,-0.002367384,0.002666163,-0.887936649,0.375263237,neg,ns,0.425663979,-0.000100612,0.0000917,-1.097316184,0.273354817,neg,ns,0.935205042,Gm45252,Gm45252_Intergenic_upstream,8,30980889,30980938,30980889,30980890,50,-,CGATCATAACTGTGATTATAAGGCATAATTACAATTAGCTGCACAAGAGT,Distal Intergenic,8,31003908,31004304,397,1,Gm45252-201,-23019,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12335,cg24340719,-0.0000122,0.00000319,-3.825837396,0.000157611,loss,ns,0.00000666,0.00000542,1.228507238,0.22018844,pos,ns,0.002754617,0.001588724,1.733855326,0.083937948,pos,ns,1.076041652,-0.000147111,0.0000546,-2.692568654,0.007475858,neg,ns,0.936730719,Fign,Fign_threeUTR,2,63973499,63973548,63973547,63973548,50,-,GTCTTTCTGAGGTAGACTGTTCAAGTTCAAGGACAAGTCTTTTTCTTACG,3' UTR,2,63971507,64098012,126506,2,Fign-203,124464,Fign-203;Fign-201,Fign;Fign,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,14,84,60344,ENSMUSG00000075324,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14598,cg04135908,0.00000301,0.00000153,1.9647365,0.050337619,gain,ns,0.0000032,0.0000026,1.228480501,0.220198457,pos,ns,0.000157287,0.000761955,0.206425516,0.836594051,pos,ns,0.077485228,0.0000265,0.0000262,1.01157923,0.312528175,pos,ns,0.964174436,Ttn,Ttn_Exon,2,76802457,76802506,76802457,76802458,50,+,CGTCTGGTCCTCAAGAGGCTTAGTGAATTCAACTGGGGGTTCTGAAAGAA,"Exon (Ttn-201/Ttn, exon 70 of 191)",2,76703980,76982455,278476,2,Ttn-201,179949,Ttn-201;Ttn-203;Ttn-205;Ttn-204,Ttn;Ttn;Ttn;Ttn,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,12,22138,ENSMUSG00000051747,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20023,cg09277469,0.0000155,0.00000841,1.839256977,0.066833599,gain,ns,0.0000176,0.0000143,1.228411744,0.220224217,pos,ns,0.010849333,0.004187541,2.59086016,0.010026229,pos,ns,1.99886238,-0.000356082,0.000144009,-2.472632608,0.013948406,neg,ns,0.554644993,Ephb1,Ephb1_Intron,9,102231355,102231404,102231403,102231404,50,-,GAAGCACAATTAAATATTTACCATCACTTCTGCTCTCAGACAGTGGCACG,"Intron (Ephb1-201/Ephb1, intron 1 of 15)",9,101922128,102354693,432566,2,Ephb1-201,123289,Ephb1-201;Ephb1-202;Ephb1-203,Ephb1;Ephb1;Ephb1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,7,270190,ENSMUSG00000032537,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17963,cg20197662,-0.00000313,0.00000234,-1.336728263,0.182291533,loss,ns,0.00000489,0.00000398,1.228392724,0.220231343,pos,ns,0.002092766,0.001165181,1.79608721,0.073454254,pos,ns,1.133983045,-0.0000845,0.0000401,-2.108765935,0.035766702,neg,ns,0.932006219,Adamts9,Adamts9_Exon,6,92909949,92909998,92909997,92909998,50,-,ATTAAATTTCCAATACTTGGGTCTTTATAGATAGAGGCTACCTGCAACCG,"Exon (Adamts9-201/Adamts9, exon 5 of 40)",6,92772699,92943492,170794,2,Adamts9-201,33494,Adamts9-201,Adamts9,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,101401,ENSMUSG00000030022,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6377,cg26291907,-0.0000261,0.00000431,-6.060452027,3.94E-09,loss,yes,0.00000899,0.00000732,1.228335595,0.22025275,pos,ns,0.00294117,0.002143112,1.372382294,0.170936597,pos,ns,0.767164945,-0.000104466,0.0000737,-1.417426622,0.157362515,neg,ns,0.931026012,Pknox2,Pknox2_Intron,9,37058385,37058434,37058385,37058386,50,+,CGTCCAATCAAATGCCAGCCCAATTATCTGTGGCCAACCCAATGGGTTAA,"Intron (Pknox2-207/Pknox2, intron 1 of 10)",9,36890982,37083309,192328,2,Pknox2-207,24875,Pknox2-207;Pknox2-201;Pknox2-202;Pknox2-206;Pknox2-204;Pknox2-205;Pknox2-208;Pknox2-210;Pknox2-209;Pknox2-212;Pknox2-211,Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,47,208076,ENSMUSG00000035934,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1866,cg11712351,-0.0000209,0.00000676,-3.094246649,0.002152965,loss,ns,0.0000141,0.0000115,1.228333068,0.220253697,pos,ns,-0.005280832,0.00336596,-1.568892983,0.117693006,neg,ns,0.929249346,-0.0000521,0.000115755,-0.450394988,0.652740482,neg,ns,0.875432654,Kcnb2,Kcnb2_Exon,1,15710678,15710727,15710678,15710679,50,+,CGAGGTCATTGTGGACATGAAGAGCACCTCCAGCATCGACAGCTTCACCA,"Exon (Kcnb2-202/Kcnb2, exon 3 of 3)",1,15287254,15712548,425295,1,Kcnb2-202,423424,Kcnb2-202;Kcnb2-201,Kcnb2;Kcnb2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,98741,ENSMUSG00000092083,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20706,cg10622458,0.000000697,0.000000983,0.709115174,0.478785961,gain,ns,0.00000205,0.00000167,1.228217207,0.220297114,pos,ns,0.000409035,0.000489206,0.836119846,0.403731494,pos,ns,0.393907371,-0.0000199,0.0000168,-1.18355787,0.237494916,neg,ns,0.972521858,Cdc27,Cdc27_Exon,11,104529379,104529428,104529427,104529428,50,+,GGATTTAAACTAAGGCTCTTTTGGTAACATTCTGATCCTTTGGCAAGCCG,"Exon (Cdc27-201/Cdc27, exon 5 of 19)",11,104502745,104550483,47739,2,Cdc27-201,21055,Cdc27-201;Cdc27-203;Cdc27-202;Cdc27-205,Cdc27;Cdc27;Cdc27;Cdc27,0;0;0;21192,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,217232,ENSMUSG00000020687,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6462,cg08208061,-0.0000295,0.00000499,-5.913017456,8.86E-09,loss,yes,0.0000104,0.00000848,1.228107362,0.220338283,pos,ns,0.000355198,0.002482983,0.143052805,0.886341415,pos,ns,0.052398957,0.0000507,0.0000854,0.593994307,0.552949122,pos,ns,0.896885674,Inpp4a,Inpp4a_fiveUTR,1,37357913,37357962,37357961,37357962,50,+,GACATCATGACAGCAAGAGAGCACAGCCCTCGCCATGGTGCCAGGGCCCG,Promoter (<=1kb),1,37357919,37408259,50341,1,Inpp4a-208,0,Inpp4a-201;Inpp4a-209;Inpp4a-205;Inpp4a-207;Inpp4a-206;Inpp4a-213;Inpp4a-208,Inpp4a;Inpp4a;Inpp4a;Inpp4a;Inpp4a;Inpp4a;Inpp4a,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,9,269180,ENSMUSG00000026113,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18440,cg20658987,-0.00000143,0.00000203,-0.705250934,0.481183657,loss,ns,0.00000424,0.00000345,1.227960099,0.220393485,pos,ns,0.002182751,0.001011673,2.157565953,0.031729583,pos,ns,1.498535641,-0.0000464,0.0000348,-1.334029315,0.183173442,neg,ns,0.950059298,Cnot1,Cnot1_threeUTR,8,95733129,95733178,95733129,95733130,50,+,CGGCCAGCTGCTGCTGAATGGTAGAGATTCACCCATTCCCTCAGAAGATA,3' UTR,8,95719451,95807462,88012,2,Cnot1-202,74284,Cnot1-202;Cnot1-201;Cnot1-203;Cnot1-208;Cnot1-216;Cnot1-211;Cnot1-212;Cnot1-213;Cnot1-215;Cnot1-206;Cnot1-210,Cnot1;Cnot1;Cnot1;Cnot1;Cnot1;Cnot1;Cnot1;Cnot1;Cnot1;Cnot1;Cnot1,0;0;0;0;0;0;0;-393;3551;7004;5358,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,8,24,234594,ENSMUSG00000036550,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12566,cg04207618,-0.00000346,0.00000206,-1.677358942,0.094480247,loss,ns,0.0000043,0.0000035,1.227946855,0.22039845,pos,ns,0.001076521,0.001025862,1.049381537,0.294819954,pos,ns,0.530443126,-0.0000072,0.0000353,-0.204115319,0.838397318,neg,ns,0.976974269,Tjp1,Tjp1_threeUTR,7,65299671,65299720,65299671,65299672,50,-,CGACGAGGAGTCGGATGATTTTAGAGCAAAAGACCAACCGTCAGGAGTCA,3' UTR,7,65296165,65371239,75075,2,Tjp1-202,71519,Tjp1-202;Tjp1-201;Tjp1-207;Tjp1-203,Tjp1;Tjp1;Tjp1;Tjp1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,13,21872,ENSMUSG00000030516,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8254,cg03998126,-0.0000677,0.0000124,-5.467921779,9.38E-08,loss,yes,0.0000258,0.000021,1.227922434,0.220407605,pos,ns,0.029881622,0.006160239,4.850724272,0.00000195,pos,ns,5.709808864,-0.001171693,0.00021185,-5.530762093,6.78E-08,neg,yes,0.654863782,Ebf1,Ebf1_Intron,11,44904200,44904249,44904248,44904249,50,-,GTTAGATTTTTATCGCTTGTCCGTGTTTTCTCAGCAATTCCCCCAGCACG,"Intron (Ebf1-203/Ebf1, intron 8 of 15)",11,44617317,45004995,387679,1,Ebf1-203,286883,Ebf1-203;Ebf1-202;Ebf1-201,Ebf1;Ebf1;Ebf1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,80,13591,ENSMUSG00000057098,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25312,cg20041007,-0.0000345,0.0000102,-3.388808816,0.000792676,loss,ns,-0.0000212,0.0000173,-1.227888692,0.220420255,neg,ns,-0.002226044,0.005061164,-0.439828546,0.660367764,neg,ns,0.180214135,0.0000598,0.000174053,0.343657642,0.731336733,pos,ns,0.855336145,Dusp16,Dusp16_fiveUTR,6,134761119,134761168,134761119,134761120,50,+,CGATGATGTAATGGTGGTGTGCTCAAAGGCTCAGCCACTCCATTGTACTA,5' UTR,6,134715468,134792475,77008,2,Dusp16-202,31307,Dusp16-202;Dusp16-201;Dusp16-207;Dusp16-203;Dusp16-204,Dusp16;Dusp16;Dusp16;Dusp16;Dusp16,0;0;0;-2399;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,4,70686,ENSMUSG00000030203,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9441,cg24626269,0.0000113,0.00000922,1.230825659,0.219321119,gain,ns,0.0000192,0.0000157,1.227844485,0.22043683,pos,ns,-0.003507828,0.004587244,-0.764691834,0.445036777,neg,ns,0.351604099,0.000439276,0.000157755,2.784548783,0.005689789,pos,ns,0.770745338,Gm48909,Gm48909_Intron,14,48753216,48753265,48753264,48753265,50,-,TCCTATGTAAATACCCTTGCATAATGTTACAGGCTATTGTTAGGCCAGCG,"Intron (Otx2os1-206/Otx2os1-206, intron 2 of 4)",14,48695601,48695981,381,2,Gm48909-201,-57284,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,8,105245868,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9499,cg24015753,-0.00000338,0.00000708,-0.476896117,0.633772098,loss,ns,0.0000148,0.000012,1.22767631,0.220499891,pos,ns,-0.002174547,0.00352459,-0.616964642,0.537710905,neg,ns,0.269451156,0.000120308,0.00012121,0.992559383,0.321698826,pos,ns,0.831915381,Tenm3,Tenm3_Intergenic_upstream,8,48921200,48921249,48921248,48921249,50,+,GAACAGTCTTCAGAAATCAGCCGTATCTGATTGTTCTTTCAGATCAAACG,Distal Intergenic,8,48646261,48843951,197691,2,Tenm3-207,-77249,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,39,23965,ENSMUSG00000031561,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24633,cg25542404,-0.00000327,0.00000224,-1.458067113,0.145834382,loss,ns,0.00000467,0.00000381,1.227483305,0.220572279,pos,ns,-0.000381311,0.001115721,-0.341762264,0.73276137,neg,ns,0.135037434,0.00000712,0.0000384,0.185435669,0.853008602,pos,ns,0.931753215,Gli1,Gli1_Exon,10,127335997,127336046,127335997,127335998,50,+,CGCATGTGAACCACCAGCATGTACTGGGCTTTGAAGGGCCTCAGCTCCCT,"Exon (Gli1-201/Gli1, exon 9 of 13)",10,127329882,127341974,12093,2,Gli1-201,5928,Gli1-201;Gli1-205;Gli1-202;Gli1-204;Gli1-203,Gli1;Gli1;Gli1;Gli1;Gli1,0;0;3913;5928;5840,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,14632,ENSMUSG00000025407,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26782,cg18505571,-0.00000205,0.00000148,-1.383150401,0.167614099,loss,ns,0.00000309,0.00000252,1.227288077,0.220645519,pos,ns,0.002291615,0.000738447,3.103291065,0.002090178,pos,ns,2.679816794,-0.0000634,0.0000254,-2.497262966,0.013034007,neg,ns,0.954899411,Kdm5c,Kdm5c_Exon,X,152239675,152239724,152239723,152239724,50,-,TTCTGGGAAATCCAGGGCTCCTCCTTAAAGATTCCCAATGTAGAACGGCG,"Exon (Kdm5c-202/Kdm5c, exon 3 of 26)",20,152233020,152273768,40749,1,Kdm5c-202,6655,Kdm5c-202;Kdm5c-203;Kdm5c-204;Kdm5c-201,Kdm5c;Kdm5c;Kdm5c;Kdm5c,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,7,20591,ENSMUSG00000025332,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27525,cg25670404,-0.0000195,0.0000165,-1.181047956,0.238488986,loss,ns,0.0000344,0.000028,1.226557468,0.22091976,pos,ns,-0.022237372,0.008209229,-2.708825822,0.00712741,neg,ns,2.14706828,0.00042945,0.000282315,1.521174605,0.129235346,pos,ns,0.555000732,Gm5265,Gm5265_Intergenic_downstream,1,169076127,169076176,169076175,169076176,50,-,CCTTGTAAGACCTGGCTGCCCTACCCCAAGCCATTAGTGGGAACAGAACG,Distal Intergenic,1,169453528,169453869,342,2,Gm5265-201,377742,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,13,13,383613,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2857,cg22859252,0.00016824,0.0000138,12.17746134,3.82E-28,gain,yes,-0.0000288,0.0000235,-1.226416018,0.220972883,neg,ns,0.020163444,0.006876211,2.932347952,0.003614618,pos,ns,2.441937626,-0.000485435,0.000236472,-2.052817343,0.0409294,neg,ns,0.198284667,Zfp503,Zfp503_Promoter,14,21991369,21991418,21991417,21991418,50,+,AGTTTGTAAGTAAATCAACGCCTATCAGAGTTGTCACATCAAACAAAACG,Promoter (1-2kb),14,21983959,21989601,5643,2,Zfp503-201,-1768,Zfp503-201,Zfp503,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,18,27,218820,ENSMUSG00000039081,mapped to different genes,14,21991208,21991513,306,*,306,17,0.513071895,0.84502924,0.055555556,3.96E-09,CpGisland,TRUE,U3,Pr-B
14824,cg27528213,-0.00000111,0.00000252,-0.443230394,0.657908253,loss,ns,-0.00000524,0.00000427,-1.226331911,0.221004475,neg,ns,-0.001807169,0.001251744,-1.443721311,0.149827195,neg,ns,0.824409351,0.0000948,0.000043,2.201545218,0.028433954,pos,ns,0.925161124,Fam172a,Fam172a_Intron,13,77891626,77891675,77891626,77891627,50,-,CGTGCTGTGCAGTGTTTTGATCTCGGCAGTGGCAGTTATGTTCCTGATAA,"Intron (Fam172a-203/Fam172a, intron 6 of 10)",13,77708690,78163655,454966,1,Fam172a-203,182936,Fam172a-203;Fam172a-201;Fam172a-202;Fam172a-209;Fam172a-205;Fam172a-207;Fam172a-208,Fam172a;Fam172a;Fam172a;Fam172a;Fam172a;Fam172a;Fam172a,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,24,68675,ENSMUSG00000064138,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2759,cg26507427,0.0000631,0.00000564,11.19275798,1.19E-24,gain,yes,-0.0000117,0.00000958,-1.226203255,0.221052806,neg,ns,0.008404289,0.002805883,2.995239001,0.002963393,pos,ns,2.528210736,-0.000111439,0.0000965,-1.154875455,0.249030864,neg,ns,0.154805225,Prdm13,Prdm13_Promoter,4,21685972,21686021,21686020,21686021,50,+,AATGGTCCAGGCGACCTTCCCATTCCTAAAAATCCAATTTGTCAAGGGCG,Promoter (<=1kb),4,21677481,21685963,8483,2,Prdm13-202,-9,Prdm13-205;Prdm13-201;Prdm13-202;Prdm13-203;Prdm13-206;Prdm13-204,Prdm13;Prdm13;Prdm13;Prdm13;Prdm13;Prdm13,0;0;0;0;0;-127,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,19,23,230025,ENSMUSG00000040478,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
23160,cg14815482,0.000110913,0.00000931,11.91610319,3.31E-27,gain,yes,-0.0000194,0.0000158,-1.226174016,0.221063791,neg,ns,0.010830644,0.004632615,2.337911525,0.020027634,pos,ns,1.698370352,-0.000159209,0.000159315,-0.999335872,0.318411417,neg,ns,0.409516763,Rnf220,Rnf220_Intron,4,117373544,117373593,117373592,117373593,50,-,AGAAAAATGCCCAATTTGTCATGTCATGTCCAGCTGTTAACCTCCCGTCG,"Intron (Rnf220-201/Rnf220, intron 2 of 14)",4,117271463,117497052,225590,2,Rnf220-201,123459,Rnf220-201;Rnf220-202;Rnf220-207,Rnf220;Rnf220;Rnf220,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24415,cg19833056,0.0000191,0.000011,1.737868933,0.083226943,gain,ns,0.0000229,0.0000187,1.226043274,0.221112916,pos,ns,0.017246141,0.005480312,3.146926808,0.001810294,pos,ns,2.742250885,-0.000485877,0.000188467,-2.578041799,0.010397596,neg,ns,0.270812247,Grik3,Grik3_Intron,4,125535296,125535345,125535296,125535297,50,+,CGGGTGTTTCATTCAGCTTAACTGAAAAGGCCTTTAAATCACCGCAGCTG,"Intron (Grik3-201/Grik3, intron 1 of 15)",4,125490700,125714173,223474,1,Grik3-201,44596,Grik3-201,Grik3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,14,18,14807,ENSMUSG00000001985,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17697,cg15950348,0.0000479,0.00000487,9.84099925,4.60E-20,gain,yes,-0.0000101,0.00000827,-1.226015005,0.221123538,neg,ns,0.007814843,0.002422075,3.226508197,0.001387063,pos,ns,2.857903809,-0.000128653,0.0000833,-1.544543015,0.123477034,neg,ns,0.082474268,Zic4,Zic4_threeUTR,9,91387152,91387201,91387200,91387201,50,-,TTCAAAGGCGGCACACTTCACTACAGACACTCTATTAAGATACATTTGCG,3' UTR,9,91368970,91387793,18824,1,Zic4-204,18182,Zic4-204;Zic4-209;Zic4-205;Zic4-201;Zic4-202,Zic4;Zic4;Zic4;Zic4;Zic4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,threeUTR,18,55,22774,ENSMUSG00000036972,conserved gene and region,9,91387047,91387219,173,*,173,16,0.549132948,1.250225836,0.092485549,5.72E-12,CpGisland,TRUE,U13,Hc-P
6206,cg24287154,-0.00000451,0.00000459,-0.983873691,0.325944872,loss,ns,-0.00000955,0.00000779,-1.226012298,0.221124556,neg,ns,0.002093898,0.002282742,0.917273043,0.359712643,pos,ns,0.444044298,-0.000188909,0.0000785,-2.406380102,0.016696355,neg,ns,0.854003736,Arid5a,Arid5a_Exon,1,36317245,36317294,36317293,36317294,50,+,CTTCCTGGTCAGCCTCTACAAGTTCATGAAGGAGCGACACACGCCCATCG,"Exon (Arid5a-207/Arid5a, exon 3 of 7)",1,36307733,36319203,11471,1,Arid5a-207,9512,Arid5a-207;Arid5a-211;Arid5a-214;Arid5a-212;Arid5a-206;Arid5a-201;Arid5a-205;Arid5a-203;Arid5a-204;Arid5a-208;Arid5a-215;Arid5a-202;Arid5a-209;Arid5a-213;Arid5a-210,Arid5a;Arid5a;Arid5a;Arid5a;Arid5a;Arid5a;Arid5a;Arid5a;Arid5a;Arid5a;Arid5a;Arid5a;Arid5a;Arid5a;Arid5a,0;0;0;0;0;0;0;0;0;0;9487;0;9466;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,214855,ENSMUSG00000037447,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27000,cg21401792,-0.00000231,0.00000122,-1.887835561,0.059981827,loss,ns,-0.00000255,0.00000208,-1.22588684,0.221171704,neg,ns,0.000170872,0.000608858,0.280643706,0.779170892,pos,ns,0.10836728,-0.0000235,0.0000209,-1.122704173,0.26243192,neg,ns,0.96625185,Cpne1,Cpne1_Exon,2,156097888,156097937,156097888,156097889,50,+,CGCTGGCTGTGGAAAATGTCTGTATGTTTTTGTTGCTTTCATGAACAGAA,"Exon (Gm28036-201/Gm28036, exon 1 of 16)",2,156071842,156111935,40094,2,Cpne1-217,13998,Cpne1-217;Cpne1-209;Cpne1-202;Cpne1-203;Cpne1-201;Cpne1-210;Cpne1-206;Cpne1-212;Cpne1-208;Cpne1-205;Cpne1-213;Cpne1-216;Gm28036-201;Gm28036-202;Gm28036-203;Gm28036-204;Gm28036-205;Gm28036-208;Gm28036-207;Gm28036-206;Rbm12-201;Rbm12-202;Rbm12-204;Rbm12-203;Rbm12-205,Cpne1;Cpne1;Cpne1;Cpne1;Cpne1;Cpne1;Cpne1;Cpne1;Cpne1;Cpne1;Cpne1;Cpne1;Gm28036;Gm28036;Gm28036;Gm28036;Gm28036;Gm28036;Gm28036;Gm28036;Rbm12;Rbm12;Rbm12;Rbm12;Rbm12,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;-960;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,9,266692,ENSMUSG00000074643,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19025,cg02732915,0.0000523,0.0000068,7.692160468,1.94E-13,gain,yes,-0.0000142,0.0000116,-1.225615776,0.221273597,neg,ns,0.008875935,0.003384965,2.622164561,0.009168712,pos,ns,2.037691655,-0.0000621,0.000116409,-0.533383145,0.594150581,neg,ns,0.152454623,Prdm8,Prdm8_Intron,5,98182704,98182753,98182752,98182753,50,+,TTAGCTGACACAGAATTAGTGGCCCTGACATTCCACTTGAAATCCATTCG,"Intron (Prdm8-202/Prdm8, intron 2 of 4)",5,98167198,98187454,20257,1,Prdm8-202,15506,Prdm8-202;Prdm8-201,Prdm8;Prdm8,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,10,77630,ENSMUSG00000035456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
8557,cg05874175,0.0000105,0.00002,0.525649766,0.599507365,gain,ns,-0.0000416,0.000034,-1.225606363,0.221277135,neg,ns,0.0100375,0.00995223,1.008567903,0.313968478,pos,ns,0.503113953,-0.000466368,0.000342256,-1.362627307,0.173989069,neg,ns,0.57211654,Btrc,Btrc_Exon,19,45330092,45330141,45330092,45330093,50,-,CGAGCAGGAATGAAATGTTCATAAAGAATTGCTGCATCTCGTCACCTTAA,"Exon (Gm28578-209/Gm28578-209, exon 6 of 7)",19,45363734,45507736,144003,1,Btrc-204,-33642,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,30,98,12234,ENSMUSG00000025217,conserved gene and region,19,45329908,45330151,244,*,244,14,0.471311475,1.056277056,0.057377049,8.59E-08,CpGisland,TRUE,NA,NRS
11703,cg18496572,0.0000012,0.0000117,0.103227298,0.917849321,gain,ns,0.0000243,0.0000198,1.225599134,0.221279854,pos,ns,0.003577121,0.0058052,0.616192543,0.538219643,pos,ns,0.269040456,0.0000118,0.00019964,0.059229515,0.952807464,pos,ns,0.723150012,Gm50296,Gm50296_Intron,19,60148913,60148962,60148961,60148962,50,-,TTGTATTTACAATCCTGTATATGGTTCTATTACTACCACTTATTGTGACG,"Intron (E330013P04Rik-201/E330013P04Rik-201, intron 1 of 4)",19,60093460,60093931,472,2,Gm50296-201,-55031,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5373,cg25618106,-0.00000375,0.00000283,-1.327700281,0.185253971,loss,ns,0.00000589,0.0000048,1.225525027,0.221307717,pos,ns,0.002530766,0.001407112,1.798553794,0.07306197,pos,ns,1.136308619,-0.0000943,0.0000484,-1.948165632,0.052297362,neg,ns,0.067776558,Lmx1b,Lmx1b_Exon,2,33639515,33639564,33639563,33639564,50,+,TTTCCGATCCCGGAAGTAGCAGCTGGTGGTGAGGGCTTGCTGACACGCCG,"Exon (Lmx1b-201/Lmx1b, exon 2 of 8)",2,33560965,33640608,79644,2,Lmx1b-201,1044,Lmx1b-201;Lmx1b-203;Lmx1b-204,Lmx1b;Lmx1b;Lmx1b,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,26,16917,ENSMUSG00000038765,conserved gene and region,2,33639200,33640032,833,*,833,76,0.673469388,0.805752832,0.091236495,1.56E-54,CpGisland,TRUE,U3,Pr-B
16420,cg05177513,0.0000102,0.0000125,0.817010303,0.414549971,gain,ns,-0.0000261,0.0000213,-1.225158499,0.221445563,neg,ns,-0.002587727,0.006233361,-0.415141575,0.678325439,neg,ns,0.168561896,-0.0000416,0.000214365,-0.193915808,0.846368809,neg,ns,0.604640605,Fbxw7,Fbxw7_Exon,3,84952513,84952562,84952561,84952562,50,-,ACCTGAAAAAGGTTTATATTGTCAGAGACTGCCAAGCAGCCGGACACACG,"Exon (Fbxw7-201/Fbxw7, exon 1 of 11)",3,84815268,84979198,163931,1,Fbxw7-204,137245,Fbxw7-204;Fbxw7-205;Fbxw7-203;Fbxw7-202;Fbxw7-201;Gm37240-203,Fbxw7;Fbxw7;Fbxw7;Fbxw7;Fbxw7;Gm37240,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,10,50754,ENSMUSG00000028086,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18257,cg04198941,0.00000491,0.00000218,2.249569287,0.025177708,gain,ns,0.00000454,0.0000037,1.225129805,0.221456358,pos,ns,0.003636606,0.001085372,3.350560116,0.000906197,pos,ns,3.042777247,-0.0000383,0.0000373,-1.026177933,0.305607771,neg,ns,0.0582276,Ap3b1,Ap3b1_Intergenic_downstream,13,94596673,94596722,94596721,94596722,50,-,GCAAACAGGGACAGCGAACAGCAACAACAAATAACCTAGTGTCAGAGACG,Distal Intergenic,13,94542303,94547867,5565,1,Ap3b1-202,54419,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,33,55,11774,ENSMUSG00000021686,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
9092,cg00197456,-0.0000235,0.0000109,-2.158851539,0.031628766,loss,ns,-0.0000226,0.0000185,-1.224934231,0.221529938,neg,ns,-0.015774539,0.005406393,-2.917756663,0.003783304,neg,ns,2.422128789,0.000132557,0.000185925,0.712960476,0.476406539,pos,ns,0.108080296,Bicral,Bicral_fiveUTR,17,46858388,46858437,46858436,46858437,50,-,CTTGAAATTTTTATCACAAAATTATAATACACTCAAAGGGAAACTCACCG,Promoter (<=1kb),17,46825795,46858482,32688,2,Bicral-203,45,Bicral-203,Bicral,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,4,210982,ENSMUSG00000036568,conserved gene and region,17,46858436,46858691,256,*,256,44,0.76953125,1.164598842,0.171875,1.00E-45,CpGisland,TRUE,U1,Pr-A
29,cg24877944,-0.00000605,0.00000251,-2.41336092,0.016385856,loss,ns,0.00000521,0.00000426,1.224909855,0.221539111,pos,ns,0.007253065,0.001247286,5.815075427,1.51E-08,pos,ns,7.821730271,-0.000181216,0.0000429,-4.224726387,0.0000315,neg,ns,0.937003405,Ppp6r3,Ppp6r3_Exon,19,3473803,3473852,3473803,3473804,50,+,CGTTGAAGCCAAACTGGTCAATAAAATTGGACGTCATTTGTTGCATCTGA,"Exon (Ppp6r3-201/Ppp6r3, exon 15 of 23)",19,3454928,3575720,120793,2,Ppp6r3-201,101868,Ppp6r3-201;Ppp6r3-203;Ppp6r3-202;Ppp6r3-207;Ppp6r3-208;Ppp6r3-204,Ppp6r3;Ppp6r3;Ppp6r3;Ppp6r3;Ppp6r3;Ppp6r3,0;0;0;-2798;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,52036,ENSMUSG00000024908,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21059,cg01319039,-0.0000133,0.0000137,-0.970574804,0.332516718,loss,ns,0.0000284,0.0000232,1.224868647,0.221554617,pos,ns,0.003766895,0.006796352,0.554252422,0.579805711,pos,ns,0.236717511,-0.0000224,0.000233726,-0.095768661,0.923766186,neg,ns,0.539666021,Vrk1,Vrk1_Intergenic_downstream,12,106195717,106195766,106195717,106195718,50,-,CGTTGAATACAGAAGGGCAAGTTAAATCCTGTCATTGAAACAGCAAACAG,Distal Intergenic,12,106030717,106075409,44693,1,Vrk1-204,165049,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,29,37,22367,ENSMUSG00000021115,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7446,cg25506728,0.00000332,0.00000112,2.955011605,0.003366199,gain,ns,0.00000234,0.00000191,1.224852758,0.221560596,pos,ns,0.001641668,0.000558778,2.937960325,0.003551586,pos,ns,2.44957767,-0.0000506,0.0000192,-2.634020724,0.008861513,neg,ns,0.032829637,Angpt1,Angpt1_Exon,15,42676311,42676360,42676311,42676312,50,-,CGTGTTCTGGAAGAATGAAAGTGTAGGCACATTGCCCATGTTGAATCCGG,Promoter (<=1kb),15,42424723,42676977,252255,2,Angpt1-201,617,Angpt1-201;Angpt1-202,Angpt1;Angpt1,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,11600,ENSMUSG00000022309,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21167,cg19609519,0.0000814,0.0000151,5.373120848,0.000000152,gain,yes,-0.0000315,0.0000257,-1.22450509,0.221691456,neg,ns,0.027486922,0.007536544,3.64715191,0.000310938,pos,ns,3.507326891,-0.000646209,0.000259181,-2.493270809,0.013178498,neg,ns,0.333611593,Gm17304,Gm17304_Intron,5,106581164,106581213,106581212,106581213,50,+,ACCCAGCTGGACCTGATAATGGAAAACTATTGATTTTTGTGGGCTCCACG,"Intron (Gm28039-201/Gm28039-201, intron 2 of 2)",5,106609098,106609201,104,1,Gm17304-201,-27885,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,35,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20317,cg05296643,0.0000388,0.00000364,10.6800238,7.03E-23,gain,yes,-0.00000756,0.00000618,-1.224488473,0.221697712,neg,ns,0.005412719,0.001809301,2.991607004,0.002997858,pos,ns,2.523188969,-0.0000882,0.0000622,-1.416712382,0.15757115,neg,ns,0.076771256,Hoxc5,Hoxc5_Intron,15,102998089,102998138,102998089,102998090,50,-,CGCATTCCCGGTTGTTTGCAGAAAATTTACAGCTGAGTAATAAAAGTTTA,"Intron (Hoxc5-202/Hoxc5, intron 1 of 1)",15,102967443,103015676,48234,1,Hoxc5-202,30646,Hoxc5-202;Hoxc6-202;Hoxc6-203;Hoxc8-201;Hoxc8-202,Hoxc5;Hoxc6;Hoxc6;Hoxc8;Hoxc8,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,46,134,15424,ENSMUSG00000022485,conserved gene but different region,15,102997967,102998098,132,*,132,9,0.613636364,0.776470588,0.068181818,0.00000904,CpGisland,TRUE,U13,Hc-P
24289,cg07847256,-0.00000943,0.0000056,-1.682898855,0.093401477,loss,ns,0.0000117,0.00000951,1.224486974,0.221698276,pos,ns,0.008434949,0.002787544,3.025942998,0.002686232,pos,ns,2.570856549,-0.000400504,0.0000959,-4.177863758,0.0000383,neg,ns,0.858855661,Hs3st4,Hs3st4_Intergenic_downstream,7,124502578,124502627,124502578,124502579,50,-,CGCTAGACAAGCAATATTATGTTAAGAACATGATAAAATACCAGCAGCTC,Distal Intergenic,7,123982869,124398989,416121,1,Hs3st4-201,519758,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,3,628779,ENSMUSG00000078591,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
908,cg02951257,0.0000338,0.00000758,4.464353501,0.0000113,gain,ns,-0.0000158,0.0000129,-1.224484227,0.22169931,neg,ns,0.010160758,0.003770673,2.694680523,0.007429741,pos,ns,2.129026296,-0.000475223,0.000129673,-3.664778348,0.000291119,neg,ns,0.097463369,Fam155a,Fam155a_Exon,8,9770838,9770887,9770838,9770839,50,-,CGGCGCAGAACCACAAGTGATCAGAGAGCAGGACTGTGAAAAACAAGAGA,Promoter (<=1kb),8,9205902,9771161,565260,2,Fam155a-201,274,Fam155a-201;Fam155a-206;Fam155a-203,Fam155a;Fam155a;Fam155a,0;0;-734,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,4,270028,ENSMUSG00000079157,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
19695,cg06021159,-0.00000294,0.00000104,-2.831643173,0.004933841,loss,ns,0.00000216,0.00000177,1.224464608,0.221706697,pos,ns,0.001463535,0.000517402,2.828624272,0.004979415,pos,ns,2.302821698,-0.0000317,0.0000178,-1.784260891,0.075359221,neg,ns,0.032211475,Man1a2,Man1a2_Exon,3,100684669,100684718,100684669,100684670,50,-,CGTTTGTGTTTTGAAGAGTCTGGAAGGAAAAAGAATGCCCCAAAACACAG,Promoter (<=1kb),3,100562208,100685503,123296,2,Man1a2-201,785,Gm12485-201;Man1a2-201;Man1a2-203;Man1a2-206;Man1a2-202;Man1a2-205,Gm12485;Man1a2;Man1a2;Man1a2;Man1a2;Man1a2,4404;0;-56;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,17156,ENSMUSG00000008763,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
17551,cg25517735,-0.0000933,0.0000123,-7.597089142,3.61E-13,loss,yes,-0.0000255,0.0000209,-1.224446166,0.22171364,neg,ns,0.002828484,0.006111604,0.462805579,0.643828432,pos,ns,0.191229848,-0.00043013,0.000210178,-2.0465062,0.041549759,neg,ns,0.752579921,Gm47688,Gm47688_Intron,12,90916312,90916361,90916360,90916361,50,-,GGATGAAATGCCCCCTAGATCAAAGTGACAAAGTGGTTAGGATATTCACG,"Intron (4930544I03Rik-201/4930544I03Rik-201, intron 2 of 4)",12,90938235,90938382,148,2,Gm47688-201,22070,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5701,cg10437042,-0.00000271,0.000000766,-3.534940567,0.000470058,loss,ns,-0.00000159,0.0000013,-1.224435982,0.221717474,neg,ns,-0.000434429,0.000381224,-1.139564925,0.255347354,neg,ns,0.592868638,-0.00000127,0.0000131,-0.097175087,0.922650147,neg,ns,0.977481923,Mapkap1,Mapkap1_Exon,2,34597459,34597508,34597459,34597460,50,-,CGAATCAGAAAGCCAGCACTAAGTTTTGGATTAAGCAGAAACCCATCTCA,"Exon (Mapkap1-204/Mapkap1, exon 9 of 11)",2,34406862,34623475,216614,1,Mapkap1-204,190597,Mapkap1-204;Mapkap1-202;Mapkap1-201;Mapkap1-209;Mapkap1-203,Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,59,227743,ENSMUSG00000038696,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10786,cg27209152,1.61E-08,0.0000011,0.014661403,0.988311743,gain,ns,0.00000229,0.00000187,1.224408676,0.221727755,pos,ns,0.001675241,0.000548098,3.056464298,0.002434498,pos,ns,2.613590603,-0.0000694,0.0000188,-3.684257395,0.000270603,neg,ns,0.969946094,Vti1a,Vti1a_Intron,19,55411783,55411832,55411831,55411832,50,-,AGAGGGTCACTGGCAACAGTATATAGTATTACAGACAAAGTATTTTTACG,"Intron (Vti1a-206/Vti1a, intron 5 of 7)",19,55316295,55577001,260707,1,Vti1a-206,95488,Vti1a-206;Vti1a-202;Vti1a-201;Vti1a-203,Vti1a;Vti1a;Vti1a;Vti1a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,32,53611,ENSMUSG00000024983,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22156,cg12898493,-0.0000446,0.00000737,-6.051262856,4.14E-09,loss,yes,0.0000153,0.0000125,1.224362049,0.221745312,pos,ns,-0.001212411,0.003669288,-0.330421248,0.741304886,neg,ns,0.130003138,-0.000205932,0.000126187,-1.631965787,0.10370206,neg,ns,0.911893353,Agbl4,Agbl4_Exon,4,111454099,111454148,111454099,111454100,50,-,CGGGATTTGGGTTGATGAGGAGAAATGGCACCAGCTACAAGTAACCCAAG,"Exon (Bend5-201/Bend5, exon 5 of 6)",4,110397698,111567010,1169313,1,Agbl4-205,1056401,Agbl4-205;Agbl4-206;Agbl4-201;Agbl4-202;Agbl4-209;Bend5-201;Bend5-203;Bend5-206;Bend5-202,Agbl4;Agbl4;Agbl4;Agbl4;Agbl4;Bend5;Bend5;Bend5;Bend5,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,16,78933,ENSMUSG00000061298,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9158,cg25518911,-0.00000736,0.00000852,-0.864238492,0.38812511,loss,ns,0.0000177,0.0000145,1.223773059,0.221967169,pos,ns,0.010061515,0.004238798,2.373671773,0.018221349,pos,ns,1.73941948,0.000349587,0.000145772,2.39817721,0.017067834,pos,ns,0.352930882,Stox2,Stox2_Exon,8,47287907,47287956,47287955,47287956,50,-,GGGGCGCGAAGGCCGCGGGGAAACGCTTGTGCAGGCGGTAGTCCTTCTCG,"Exon (Stox2-201/Stox2, exon 1 of 4)",8,47180048,47289402,109355,2,Stox2-201,1446,Stox2-201;Stox2-209;Stox2-202;Stox2-208,Stox2;Stox2;Stox2;Stox2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,71069,ENSMUSG00000038143,conserved gene and region,8,47287911,47289523,1613,*,1613,199,0.712957223,0.970852086,0.123372598,2.14E-170,CpGisland,TRUE,U3,Pr-B
3461,cg17871944,-0.00000785,0.00000871,-0.901466386,0.368040228,loss,ns,-0.0000181,0.0000148,-1.223619367,0.222025087,neg,ns,-0.014108755,0.004335006,-3.254610193,0.001260973,neg,ns,2.899294301,0.0000139,0.000149081,0.093061954,0.925914457,pos,ns,0.790929212,Bcl11a,Bcl11a_Exon,11,24158316,24158365,24158316,24158317,50,-,CGCCTGGGATGAGTGCAGAATATGCCCCGCAGGGTATTTGTAAGTTGAGC,"Exon (Bcl11a-201/Bcl11a, exon 3 of 5)",11,24078056,24173194,95139,1,Bcl11a-201,80260,Bcl11a-201;Bcl11a-203;Bcl11a-202;Bcl11a-204;Bcl11a-206,Bcl11a;Bcl11a;Bcl11a;Bcl11a;Bcl11a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,51,98,14025,ENSMUSG00000000861,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26251,cg12994502,0.00000123,0.00000173,0.710022196,0.478224121,gain,ns,0.00000359,0.00000294,1.223514285,0.222064693,pos,ns,0.002689738,0.000859943,3.127808796,0.001928363,pos,ns,2.714811259,-0.0000811,0.0000296,-2.741131372,0.006478142,neg,ns,0.959638927,Zfp655,Zfp655_Exon,5,145237013,145237062,145237061,145237062,50,-,AGTGTGTTTTCCATTCCTGGCTCTTTAATCTTTGTAGGCATACTTCTCCG,"Exon (Zfp655-206/Zfp655, exon 5 of 5)",5,145231715,145238322,6608,1,Zfp655-206,5298,Zfp655-206;Zfp655-202;Zfp655-203;Zfp655-205;Zfp655-204;Zfp655-201,Zfp655;Zfp655;Zfp655;Zfp655;Zfp655;Zfp655,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,2,72611,ENSMUSG00000007812,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27703,cg02417230,0.00000846,0.00000845,1.001143132,0.317538427,gain,ns,-0.0000176,0.0000144,-1.223436742,0.222093923,neg,ns,0.018040982,0.004205155,4.290206417,0.0000239,pos,ns,4.621907107,-0.000196982,0.000144615,-1.362113521,0.174150966,neg,ns,0.744462141,Zbtb18,Zbtb18_Exon,1,177447741,177447790,177447789,177447790,50,+,CAGCCCCTGCAGCTCAACAGAGTCTTTGTCCCAGAGGTCTGTCACCTCCG,"Exon (Zbtb18-202/Zbtb18, exon 2 of 2)",1,177444295,177450764,6470,1,Zbtb18-202,3446,Zbtb18-209;Zbtb18-211;Zbtb18-208;Zbtb18-203;Zbtb18-202;Zbtb18-204;Zbtb18-206;Zbtb18-210;Zbtb18-205;Zbtb18-212;Zbtb18-207;Zbtb18-201,Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,22,30928,ENSMUSG00000063659,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25051,cg09635067,-0.00000233,0.00000311,-0.748154532,0.454934152,loss,ns,0.00000646,0.00000528,1.223322256,0.222137083,pos,ns,-0.000151768,0.001548106,-0.098034566,0.921968202,neg,ns,0.035284057,0.0000589,0.0000532,1.106620537,0.269316009,pos,ns,0.48644176,Rab29,Rab29_Exon,1,131867727,131867776,131867727,131867728,50,-,CGATATTCCCAGGACAGCTTCAGCAAACACTACAAGTCCACGGTGGGAGG,Promoter (<=1kb),1,131867224,131872739,5516,1,Rab29-202,503,Rab29-202;Rab29-201;Rab29-203;Rab29-204,Rab29;Rab29;Rab29;Rab29,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,226422,ENSMUSG00000026433,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
26750,cg10788022,-0.00000214,0.00000156,-1.372791945,0.170809299,loss,ns,0.00000324,0.00000265,1.223189196,0.222187253,pos,ns,0.000934955,0.000774979,1.206426896,0.228572799,pos,ns,0.640975454,-0.00000921,0.0000267,-0.345597142,0.729879895,neg,ns,0.073951686,Klhl21,Klhl21_Exon,4,152009346,152009395,152009394,152009395,50,+,TGGCCAACTGCCTGGACATGCAGGACTTCGCTGAGGCCTTCAGCTGCTCG,Promoter (<=1kb),4,152008803,152017680,8878,1,Klhl21-201,543,Klhl21-201,Klhl21,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,242785,ENSMUSG00000073700,conserved gene and region,4,152008836,152009962,1127,*,1127,146,0.715173026,1.013639052,0.129547471,8.21E-129,CpGisland,TRUE,NA,NRS
8600,cg19104094,0.0000776,0.0000146,5.324693645,0.000000195,gain,yes,-0.0000303,0.0000247,-1.223132694,0.222208559,neg,ns,0.023789751,0.007250276,3.281220221,0.001151458,pos,ns,2.938751925,-0.000716222,0.000249336,-2.872513113,0.004353075,neg,ns,0.391838061,Btrc,Btrc_Intron,19,45432862,45432911,45432862,45432863,50,-,CGTTGAACATCTCCACTCTGATTGCTGTTCCCTTTGGCATTACAATGAGA,"Intron (Btrc-204/Btrc, intron 1 of 2)",19,45363734,45507736,144003,1,Btrc-204,69128,Btrc-204;Btrc-201;Btrc-210;Btrc-206;Btrc-202;Btrc-203,Btrc;Btrc;Btrc;Btrc;Btrc;Btrc,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,63,98,12234,ENSMUSG00000025217,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16785,cg03066211,-0.00000303,0.00000172,-1.756726634,0.079951685,loss,ns,0.00000358,0.00000293,1.22308065,0.222228186,pos,ns,0.001622711,0.00085737,1.892662411,0.059334197,pos,ns,1.226694933,-0.000059,0.0000295,-2.000423304,0.046326459,neg,ns,0.063695812,Pcbp1,Pcbp1_Exon,6,86525858,86525907,86525906,86525907,50,-,TAAGAAGCCGAATGGTGAGAGTCACATTTAGTCCACTTTCAGTCACACCG,Promoter (<=1kb),6,86524492,86526321,1830,2,Pcbp1-201,414,Pcbp1-201,Pcbp1,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,14,15,23983,ENSMUSG00000051695,mapped to different genes,6,86525687,86527366,1680,*,1680,200,0.679166667,1.041169581,0.119047619,1.10E-167,CpGisland,TRUE,U1,Pr-A
17423,cg15889033,-0.000000715,0.00000588,-0.121665551,0.903242724,loss,ns,-0.0000122,0.00000999,-1.223076111,0.222229898,neg,ns,0.000918366,0.002925695,0.313896584,0.753810706,pos,ns,0.122737699,-0.000249963,0.000100614,-2.484367434,0.013505884,neg,ns,0.732747508,Tbc1d2b,Tbc1d2b_Exon,9,90226116,90226165,90226116,90226117,50,+,CGCTGAGCTTGATGATGACCTCGTCCTTGGCTTGGATGGTCTCCATGAGC,"Exon (Tbc1d2b-201/Tbc1d2b, exon 6 of 13)",9,90202027,90270769,68743,2,Tbc1d2b-201,44604,Gm16200-201;Tbc1d2b-201;Tbc1d2b-203,Gm16200;Tbc1d2b;Tbc1d2b,-4491;0;44639,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,3,67016,ENSMUSG00000037410,conserved gene and region,9,90226101,90226434,334,*,334,16,0.604790419,0.524693176,0.047904192,9.83E-08,CpGisland,TRUE,U10,Tr-S
26141,cg17101801,-0.00000608,0.00000379,-1.606372961,0.109210078,loss,ns,-0.00000786,0.00000643,-1.222475249,0.222456584,neg,ns,-0.003883945,0.00188431,-2.061202448,0.040117393,neg,ns,1.3966673,0.000147389,0.0000648,2.274472627,0.023620588,pos,ns,0.910897198,Lmo4,Lmo4_Exon,3,144193965,144194014,144194013,144194014,50,-,ATCATGTTCACAAAATAAACTGCCATTGATGTAGTGAAACCGATCTCCCG,"Exon (Lmo4-203/Lmo4, exon 4 of 5)",3,144188530,144202396,13867,2,Lmo4-203,8382,Lmo4-203;Lmo4-201;Lmo4-202;Lmo4-207;Lmo4-206;Lmo4-208,Lmo4;Lmo4;Lmo4;Lmo4;Lmo4;Lmo4,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,18,54,16911,ENSMUSG00000028266,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22646,cg13131352,-0.0000145,0.00000634,-2.296287096,0.022326277,loss,ns,0.0000132,0.0000108,1.222403824,0.222483542,pos,ns,-0.001032577,0.003153339,-0.327455047,0.743544757,neg,ns,0.128692884,-0.000079,0.000108443,-0.728734717,0.46671411,neg,ns,0.894101937,A930009A15Rik,A930009A15Rik_Promoter,10,115570677,115570726,115570725,115570726,50,+,CCTTTCTCTCAGAAATAGGGTCTGTGTCAAATATGTAGGTATTTCCCACG,Promoter (<=1kb),10,115569986,115582448,12463,1,A930009A15Rik-201,691,A930009A15Rik-201;Lgr5-201;Lgr5-206;Lgr5-208;Lgr5-202;Lgr5-205;Lgr5-203,A930009A15Rik;Lgr5;Lgr5;Lgr5;Lgr5;Lgr5;Lgr5,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,1,2,77798,ENSMUSG00000092210,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24814,cg23363971,0.00000129,0.0000016,0.809731973,0.418715333,gain,ns,0.00000332,0.00000271,1.222333615,0.222510043,pos,ns,0.001786627,0.000795123,2.246981124,0.025344547,pos,ns,1.596115463,-0.000027,0.0000273,-0.985838948,0.324980955,neg,ns,0.053448105,Ikzf4,Ikzf4_fiveUTR,10,128645813,128645862,128645813,128645814,50,-,CGTCTCAGTGGCAGGCAGGGGTGAGCCCAGCCACTCACCTTCCAGGAAGC,Promoter (<=1kb),10,128632415,128645826,13412,2,Ikzf4-203,0,Ikzf4-201;Ikzf4-209;Ikzf4-210;Ikzf4-203;Ikzf4-208;Ikzf4-204;Ikzf4-206;Ikzf4-207;Ikzf4-205;Ikzf4-202,Ikzf4;Ikzf4;Ikzf4;Ikzf4;Ikzf4;Ikzf4;Ikzf4;Ikzf4;Ikzf4;Ikzf4,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,6,22781,ENSMUSG00000002578,conserved gene and region,10,128645694,128645819,126,*,126,13,0.642857143,1.00244798,0.103174603,2.07E-10,CpGisland,TRUE,NA,NRS
20248,cg01726872,0.0000153,0.00000375,4.063753116,0.0000613,gain,ns,-0.0000078,0.00000638,-1.222326633,0.222512678,neg,ns,0.000522794,0.001868388,0.279810026,0.779809867,pos,ns,0.108011274,0.0000556,0.0000643,0.864818388,0.387807192,pos,ns,0.076398344,Hoxc10,Hoxc10_Exon,15,102970885,102970934,102970885,102970886,50,+,CGCTGGAATTGGAGAAAGAATTTCTGTTCAATATGTATTTGACGCGAGAG,"Exon (Hoxc10-201/Hoxc10, exon 2 of 2)",15,102966796,102971893,5098,1,Hoxc10-201,4089,Hoxc10-201;Hoxc5-202,Hoxc10;Hoxc5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,21,209448,ENSMUSG00000022484,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
15098,cg27564075,0.000000483,0.00000812,0.059490756,0.95259956,gain,ns,0.0000169,0.0000138,1.22218768,0.222565134,pos,ns,-0.003223803,0.004043002,-0.797378519,0.42584155,neg,ns,0.370751966,0.0000458,0.000139038,0.329446925,0.742040386,pos,ns,0.887570634,Sox10,Sox10_Promoter,15,79165936,79165985,79165936,79165937,50,+,CGGGGCCTTGAAACAGTGAGCTGTCTTTGTTCGAAATACAGGTGAACGGC,Promoter (<=1kb),15,79154908,79165240,10333,2,Sox10-203,-696,Sox10-203;Sox10-201;Sox10-202;Sox10-204,Sox10;Sox10;Sox10;Sox10,-696;-1446;-1462;-1450,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,3,20665,ENSMUSG00000033006,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
10530,cg12292854,-0.00000316,0.00000728,-0.434450329,0.664263701,loss,ns,-0.0000151,0.0000124,-1.222065241,0.222611363,neg,ns,-0.002248467,0.003625541,-0.620174206,0.535598717,neg,ns,0.271160472,-0.000139302,0.000124682,-1.117257196,0.264749519,neg,ns,0.781901526,Npas3,Npas3_Exon,12,54044678,54044727,54044678,54044679,50,+,CGTCACTCGAGTAAATATGGACCTCAATATCATTTACTGTGAAAATAGGT,"Exon (Npas3-204/Npas3, exon 7 of 11)",12,53248157,54069532,821376,1,Npas3-204,796521,Npas3-204;Npas3-201;Npas3-203,Npas3;Npas3;Npas3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,13,103,27386,ENSMUSG00000021010,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3399,cg16468500,0.0000848,0.00000893,9.497612464,6.06E-19,gain,yes,-0.0000185,0.0000152,-1.222037251,0.222621932,neg,ns,0.010211662,0.00444555,2.297052754,0.022281997,pos,ns,1.652045893,-0.000267919,0.000152882,-1.752453098,0.080684548,neg,ns,0.079435483,Kcnma1,Kcnma1_Exon,14,24003777,24003826,24003777,24003778,50,+,CGGTCCACAGGTACTTGAGCGTCCGCCAGAGCAAGATGATGAAGAGGCCC,"Exon (Kcnma1-205/Kcnma1, exon 1 of 30)",14,23292291,24004859,712569,2,Kcnma1-205,1033,Kcnma1-205;Kcnma1-212;Kcnma1-211;Kcnma1-229;Kcnma1-234;Kcnma1-223;Kcnma1-214;Kcnma1-216;Kcnma1-219;Kcnma1-220;Kcnma1-224;Kcnma1-233;Kcnma1-236;Kcnma1-237;Kcnma1-213;Kcnma1-228;Kcnma1-221;Kcnma1-225;Kcnma1-226;Kcnma1-230;Kcnma1-235;Kcnma1-238;Kcnma1-215,Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,16,41,16531,ENSMUSG00000063142,conserved gene and region,14,24003668,24003829,162,*,162,18,0.691358025,0.954500818,0.111111111,6.60E-15,CpGisland,TRUE,NA,NRS
2502,cg00139115,-0.00000157,0.00000145,-1.08390026,0.279251301,loss,ns,0.000003,0.00000246,1.22185415,0.222691081,pos,ns,0.00131375,0.000720027,1.824584969,0.069026074,pos,ns,1.160986828,-0.0000447,0.0000248,-1.80537025,0.071986835,neg,ns,0.964173042,Map3k5,Map3k5_Exon,10,20094437,20094486,20094437,20094438,50,-,CGGGACTTGAGCAACCAAGTCAGAATTGCTATTAAGGAAATCCCAGAGAG,"Exon (Map3k5-201/Map3k5, exon 15 of 30)",10,19934472,20142753,208282,1,Map3k5-201,159965,Map3k5-201;Map3k5-202;Map3k5-203,Map3k5;Map3k5;Map3k5,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,26408,ENSMUSG00000071369,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10268,cg04686121,0.0000529,0.0000136,3.877144798,0.000129051,gain,ns,0.0000283,0.0000232,1.22176362,0.222725275,pos,ns,0.021564566,0.006784472,3.178518046,0.001629727,pos,ns,2.787885171,-0.000318624,0.000233317,-1.36562442,0.173046907,neg,ns,0.258750544,Evx1,Evx1_Intergenic_downstream,6,52319225,52319274,52319225,52319226,50,-,CGTATTTTCAGTTAATAGGGAGGGAAAATGAGGTGTCTGCAGAGATATTG,Downstream (<1kb),6,52313552,52316644,3093,1,Evx1-202,5722,Evx1-201;Evx1-202,Evx1;Evx1,0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,8,19,14028,ENSMUSG00000005503,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
23044,cg09709538,0.000101667,0.0000121,8.397803506,1.65E-15,gain,yes,-0.0000251,0.0000206,-1.221758388,0.222727251,neg,ns,0.01556151,0.006025498,2.582609913,0.010263864,pos,ns,1.988689119,-0.000330803,0.000207216,-1.596414977,0.111415033,neg,ns,0.140057272,Ptprn2,Ptprn2_Intron,12,117160562,117160611,117160562,117160563,50,+,CGATAATTGCTTTGGTGGCCTTTATGATTACAAGATAAAAACGGGCCCGG,"Intron (Ptprn2-204/Ptprn2, intron 12 of 22)",12,116485729,117276849,791121,1,Ptprn2-204,674833,Ptprn2-204;Ptprn2-201,Ptprn2;Ptprn2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,5,19276,ENSMUSG00000056553,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
14883,cg19632501,-0.00000318,0.000000632,-5.023059667,0.00000086,loss,yes,-0.00000131,0.00000107,-1.221593406,0.222789578,neg,ns,-0.000964611,0.000314734,-3.064843062,0.002369291,neg,ns,2.625381648,0.0000165,0.0000108,1.522247689,0.12896641,pos,ns,0.988079403,Flot2,Flot2_fiveUTR,11,78054787,78054836,78054835,78054836,50,+,TTTCCCTAGAGATTATGACGTTGCAGCCCCGCTGCGAGGACGTAGAGACG,5' UTR,11,78037931,78060434,22504,1,Flot2-201,16856,Flot2-201;Flot2-205;Flot2-203;Flot2-202;Flot2-204,Flot2;Flot2;Flot2;Flot2;Flot2,0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,TRUE,TRUE,TRUE,FALSE,FALSE,fiveUTR,9,13,14252,ENSMUSG00000061981,conserved gene but different region,11,78054805,78054920,116,*,116,9,0.612068966,0.836538462,0.077586207,0.00000318,CpGisland,TRUE,NA,NRS
24305,cg03268781,0.0000277,0.00000454,6.086277314,3.41E-09,gain,yes,-0.00000943,0.00000772,-1.221544183,0.222808175,neg,ns,0.004385531,0.002261682,1.93905675,0.053401659,pos,ns,1.272445251,-0.0000762,0.0000778,-0.979533776,0.328080117,neg,ns,0.144372647,Pou3f1,Pou3f1_Intron,4,124575875,124575924,124575875,124575876,50,+,CGCCCAGTAGAATATTGTATTAGTTGGTTGTGAGCTGTGTTCTCGTCAGG,"Intron (Gm2164-201/Gm2164-201, intron 1 of 1)",4,124656807,124660655,3849,1,Pou3f1-201,-80883,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,43,85,18991,ENSMUSG00000090125,mapped to different genes,4,124575578,124575876,299,*,299,39,0.765886288,0.889473684,0.130434783,6.52E-35,CpGisland,TRUE,U13,Hc-P
2116,cg00889599,0.0000529,0.00000561,9.433971261,9.71E-19,gain,yes,-0.0000116,0.00000953,-1.221441916,0.222846818,neg,ns,-0.003745194,0.002791994,-1.341404818,0.180770919,neg,ns,0.742871434,0.000173838,0.000096,1.810497429,0.071186753,pos,ns,0.890656399,Skida1,Skida1_Promoter,2,18051770,18051819,18051770,18051771,50,+,CGATAAAAAGATCTAGCAGAGGCCCCTGAGCGCTCACACATGAAAGGCAG,Promoter (2-3kb),2,18044083,18049051,4969,2,Skida1-202,-2719,Mllt10-201;Skida1-202;Skida1-201;Skida1-203;Skida1-204,Mllt10;Skida1;Skida1;Skida1;Skida1,0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,12,31,72668,ENSMUSG00000054074,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16011,cg06923797,-0.00000297,0.00000196,-1.511760533,0.131613499,loss,ns,0.00000407,0.00000333,1.221320332,0.222892766,pos,ns,0.001529513,0.000976312,1.566623773,0.118222834,pos,ns,0.927298633,-0.0000316,0.0000336,-0.941559017,0.347151599,neg,ns,0.056318423,Elmsan1,Elmsan1_fiveUTR,12,84193826,84193875,84193826,84193827,50,+,CGATGCAGTGTCAGGATTGCACGGCTCTGACTCATCGGTTGAGCTCACAG,5' UTR,12,84149176,84218881,69706,2,Elmsan1-201,25006,Elmsan1-201;Elmsan1-202;Elmsan1-205,Elmsan1;Elmsan1;Elmsan1,0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,4,238317,ENSMUSG00000042507,conserved gene and region,12,84192979,84193862,884,*,884,106,0.714932127,0.950046132,0.119909502,1.38E-89,CpGisland,TRUE,U1,Pr-A
18263,cg23262887,0.0000265,0.0000101,2.63222483,0.008907444,gain,ns,-0.0000209,0.0000171,-1.221296334,0.222901836,neg,ns,-0.004609364,0.005005181,-0.920918649,0.357808999,neg,ns,0.446348742,0.0000529,0.000172128,0.307068094,0.758997711,pos,ns,0.087662592,Dyrk1a,Dyrk1a_Intron,16,94632233,94632282,94632281,94632282,50,+,AAATGAGCGTTTAATGATCTGCAGCAGTTCCCACTCACTGCGGGCAGGCG,"Intron (Dyrk1a-202/Dyrk1a, intron 2 of 11)",16,94570010,94695067,125058,1,Dyrk1a-202,62223,Dyrk1a-202;Dyrk1a-203;Dyrk1a-205;Dyrk1a-206;Dyrk1a-201,Dyrk1a;Dyrk1a;Dyrk1a;Dyrk1a;Dyrk1a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,14,13548,ENSMUSG00000022897,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17914,cg09957818,0.00000801,0.00000955,0.839453061,0.401862011,gain,ns,-0.0000198,0.0000162,-1.221139847,0.222960986,neg,ns,-0.015133606,0.004751965,-3.184704938,0.001596376,neg,ns,2.79686488,0.000580112,0.00016342,3.549828512,0.000445244,pos,ns,0.817762005,Irx5,Irx5_Intergenic_downstream,8,92449756,92449805,92449804,92449805,50,+,TTGTTTTAAACCAATATGATCTCAATTCTTTTGTGGGCTTTGAAAGTCCG,Distal Intergenic,8,92357749,92361456,3708,1,Irx5-201,92007,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,11,30,54352,ENSMUSG00000031737,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18904,cg20134794,-0.00000358,0.00000144,-2.485842138,0.013451164,loss,ns,0.00000299,0.00000245,1.221017973,0.22300706,pos,ns,0.001632261,0.000717467,2.275033026,0.023586536,pos,ns,1.627335829,-0.000059,0.0000247,-2.389693711,0.017459667,neg,ns,0.958349772,Dach1,Dach1_Intron,14,97868425,97868474,97868425,97868426,50,+,CGCAGGCATAAAATTAGCGGCAGGACCTTAAAAAGGCTGGCATTTAGCAT,"Intron (Dach1-201/Dach1, intron 6 of 10)",14,97786853,98169543,382691,2,Dach1-201,301069,Dach1-201;Dach1-202;Dach1-203,Dach1;Dach1;Dach1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,76,13134,ENSMUSG00000055639,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24039,cg00810217,0.000000439,0.00000269,0.162978737,0.870641367,gain,ns,0.00000558,0.00000457,1.220946176,0.223034206,pos,ns,0.000675191,0.001339875,0.503920799,0.614674963,pos,ns,0.211354476,0.0000224,0.0000461,0.485231569,0.627854819,pos,ns,0.955770696,Clybl,Clybl_Intron,14,122233250,122233299,122233250,122233251,50,+,CGCGCCACCCTGACCAGCGAGCCCAGATGGCGCTTAAATCTGTCACTCTT,"Intron (Clybl-201/Clybl, intron 1 of 7)",14,122181704,122402234,220531,1,Clybl-201,51546,Clybl-201,Clybl,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,13,69634,ENSMUSG00000025545,conserved gene and region,14,122233179,122233304,126,*,126,10,0.523809524,1.157024793,0.079365079,0.000000572,CpGisland,TRUE,NA,NRS
946,cg23001174,0.0000177,0.0000103,1.720913852,0.086264225,gain,ns,0.0000213,0.0000175,1.220906392,0.223049249,pos,ns,-0.00211919,0.005122239,-0.413723367,0.679362785,neg,ns,0.167898247,0.000199325,0.000176153,1.13154392,0.258700794,pos,ns,0.713895763,Gata3,Gata3_Promoter,2,9898033,9898082,9898081,9898082,50,-,TGCAAGGAGACCATTATTCCGCATGCATAGGCCATTTGCAACAGAGGTCG,Promoter (8-9kb),2,9874702,9890034,15333,2,Gata3-202,-8048,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,12,21,14462,ENSMUSG00000015619,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
464,cg17523323,-0.0000113,0.00000521,-2.169238268,0.030824306,loss,ns,0.0000108,0.00000886,1.220897664,0.22305255,pos,ns,0.0030908,0.002595226,1.190955965,0.234581969,pos,ns,0.629705373,-0.000190174,0.0000892,-2.130806897,0.033891794,neg,ns,0.885773954,Gm17934,Gm17934_Intergenic_downstream,3,6110670,6110719,6110718,6110719,50,+,GTTACACTTGAAAGATTTGTTCTGAATGTCCAGTGGGAACCTGGAAATCG,Distal Intergenic,3,6137823,6138244,422,2,Gm17934-201,27525,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,6,100416136,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20935,cg20025209,-0.00000116,0.00000142,-0.816399678,0.414898481,loss,ns,-0.00000295,0.00000241,-1.220857731,0.22306765,neg,ns,0.000877846,0.000707221,1.241260432,0.21544798,pos,ns,0.666657574,-0.0000183,0.0000243,-0.753456672,0.45174739,neg,ns,0.966056241,Relch,Relch_threeUTR,1,105726386,105726435,105726434,105726435,50,+,TCAACTGCCTGTGTCCATGAATTCTCCAGATTTTTCTGGCGCCTTTGCCG,3' UTR,1,105663861,105754072,90212,1,Relch-205,62525,Relch-205;Relch-201;Relch-202;Relch-210;Relch-212;Relch-203;Relch-204,Relch;Relch;Relch;Relch;Relch;Relch;Relch,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,6,227446,ENSMUSG00000026319,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8113,cg08472382,-0.00000615,0.0000021,-2.926884863,0.003676953,loss,ns,-0.00000436,0.00000357,-1.220515563,0.223197069,neg,ns,-0.001245395,0.001046073,-1.190543811,0.234743579,neg,ns,0.629406277,0.0000111,0.000036,0.309894908,0.756849091,pos,ns,0.938083679,Ebf1,Ebf1_Intron,11,44753604,44753653,44753604,44753605,50,+,CGATGGGCTAGTCTAATTGGAACATGGATCTTCTTAAAGGACGTTACAGG,"Intron (Ebf1-203/Ebf1, intron 6 of 15)",11,44617317,45004995,387679,1,Ebf1-203,136287,Ebf1-203;Ebf1-202;Ebf1-201,Ebf1;Ebf1;Ebf1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,80,13591,ENSMUSG00000057098,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19067,cg10196512,0.0000259,0.00000445,5.811600607,1.54E-08,gain,yes,0.00000922,0.00000756,1.22045506,0.223219959,pos,ns,0.002645499,0.002214147,1.194816066,0.233072217,pos,ns,0.632509494,-0.0000405,0.0000761,-0.53158431,0.59539464,neg,ns,0.108122911,Neurod2,Neurod2_Intergenic_downstream,11,98317319,98317368,98317367,98317368,50,+,AGCAGATGGGCTGCAGCTGTGAGCGCCAGCCCGGCACACAGGCTGGTCCG,Distal Intergenic,11,98325415,98329648,4234,2,Neurod2-201,12280,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,22,18013,ENSMUSG00000038255,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
20243,cg08900043.2,0.0000979,0.00000916,10.69701518,6.15E-23,gain,yes,0.000019,0.0000156,1.220137729,0.22334004,pos,ns,0.010738539,0.004556822,2.356585402,0.019065701,pos,ns,1.719747222,-0.000018,0.000156709,-0.114966048,0.908546463,neg,ns,0.139398013,Hoxc10,Hoxc10_Promoter,15,102966662,102966711,102966710,102966711,50,-,CATTTTCAAATCCCATTGGTCTAGCCGTCACATGGTGAGAACCGAATGCG,Promoter (<=1kb),15,102966796,102971893,5098,1,Hoxc10-201,-134,Hoxc10-201;Hoxc5-202,Hoxc10;Hoxc5,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,8,21,209448,ENSMUSG00000022484,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1470,cg10846234,0.0000355,0.00000942,3.769157822,0.000196074,gain,ns,-0.0000195,0.000016,-1.220099789,0.223354401,neg,ns,0.007549323,0.004689818,1.609726257,0.108475424,pos,ns,0.964668644,-0.000196672,0.000161282,-1.219426943,0.223609179,neg,ns,0.793775931,Sema3a,Sema3a_Promoter,5,13125339,13125388,13125339,13125340,50,+,CGCTGGGGCTGCACACATCTGCCAGCCAGACTACCTTCGTACACAATTAC,Promoter (<=1kb),5,13125414,13310754,185341,1,Sema3a-207,-26,Gm10108-201;Sema3a-207;Sema3a-208;Sema3a-206,Gm10108;Sema3a;Sema3a;Sema3a,-3573;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,9,20346,ENSMUSG00000028883,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13144,cg25179135,0.00000083,0.00000198,0.418417755,0.675931425,gain,ns,0.00000411,0.00000337,1.220064473,0.223367768,pos,ns,0.002183567,0.000987346,2.211552193,0.027726866,pos,ns,1.557099219,-0.0000403,0.000034,-1.18763358,0.235886973,neg,ns,0.959847678,Efnb3,Efnb3_Exon,11,69556128,69556177,69556128,69556129,50,+,CGCCAACACATGGCACCCCCAGCCCCTGCCACGCCCAGCAAGAGCAGCGC,"Exon (Efnb3-201/Efnb3, exon 5 of 5)",11,69554092,69560205,6114,2,Efnb3-201,4028,Efnb3-201,Efnb3,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,6,13643,ENSMUSG00000003934,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23529,cg19880129,-4.33E-08,0.00000382,-0.011341431,0.990958337,loss,ns,-0.00000791,0.00000648,-1.220055317,0.223371234,neg,ns,-0.003614611,0.001899387,-1.90304134,0.057961363,neg,ns,1.236861407,0.000119408,0.0000653,1.828057853,0.06850182,pos,ns,0.930183511,Gm28467,Gm28467_Intergenic_upstream,1,118795728,118795777,118795776,118795777,50,-,GAAGTTGATCTGTCCTTTTTATTACAATTACTGTCGGCTGGGGTGTTTCG,Distal Intergenic,1,118810136,118810453,318,1,Gm28467-201,-14408,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10690,cg05623836,0.0000213,0.0000079,2.689265953,0.007548495,gain,ns,-0.0000164,0.0000134,-1.219938702,0.223415378,neg,ns,0.000254658,0.00393397,0.06473298,0.948428327,pos,ns,0.022995484,-0.0000382,0.000135289,-0.282021784,0.77811499,neg,ns,0.113229644,Zfp608,Zfp608_Intron,18,54984834,54984883,54984834,54984835,50,-,CGTATTAAGGGAGTGGCGACTTTTACAACATACTTGTGGTTTCCACATAA,"Intron (Zfp608-201/Zfp608, intron 2 of 9)",18,54888048,54990166,102119,2,Zfp608-201,5283,Zfp608-201;Zfp608-203,Zfp608;Zfp608,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,32,269023,ENSMUSG00000052713,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17250,cg17405940,-0.0000531,0.0000145,-3.673574801,0.000281679,loss,ns,-0.00003,0.0000246,-1.219694749,0.223507747,neg,ns,-0.015467725,0.00719454,-2.149925362,0.032334496,neg,ns,1.490333899,0.000257235,0.00024742,1.039672254,0.299302395,pos,ns,0.790051057,Gm5356,Gm5356_Intergenic_upstream,8,89310700,89310749,89310700,89310701,50,-,CGAGGAGGGGAAGTAAAGTTCTGTGTTAATTTATTACAAACTGCAGCATT,Distal Intergenic,8,89186946,89187560,615,2,Gm5356-201,-123189,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,23,23,384862,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14243,cg26306688,0.0000134,0.00000451,2.971612392,0.003194258,gain,ns,-0.00000934,0.00000766,-1.219633305,0.223531016,neg,ns,0.001169461,0.002243553,0.521254009,0.602561998,pos,ns,0.219998262,0.000105055,0.0000772,1.361603334,0.174311842,pos,ns,0.099154099,Fev,Fev_fiveUTR,1,74885150,74885199,74885198,74885199,50,+,CCCTGGTACCTGGCAGGTACATGTTGATCAGCAGGGGCTGGGAGGCGCCG,Promoter (<=1kb),1,74881509,74885419,3911,2,Fev-201,220,Cryba2-201;Fev-201;Fev-202;Fev-203,Cryba2;Fev;Fev;Fev,7944;0;0;-542,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,4,260298,ENSMUSG00000055197,mapped to different genes,1,74885198,74885613,416,*,416,40,0.709134615,0.765057471,0.096153846,5.87E-30,CpGisland,TRUE,U3,Pr-B
20228,cg06302892,0.0000576,0.0000049,11.76146457,1.18E-26,gain,yes,-0.0000101,0.00000832,-1.219398453,0.223619971,neg,ns,0.004352441,0.002438435,1.784932246,0.075250005,pos,ns,1.123493464,0.0000131,0.0000839,0.156369989,0.875843175,pos,ns,0.150988753,Hoxc11,Hoxc11_Exon,15,102956492,102956541,102956492,102956493,50,-,CGCTGCCCTTATTCGAAATTCCAGATCCGGGAACTGGAGCGAGAGTTTTT,"Exon (Hoxc11-201/Hoxc11, exon 2 of 2)",15,102954427,102957708,3282,1,Hoxc11-201,2065,Hoxc11-201,Hoxc11,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,24,109663,ENSMUSG00000001656,conserved gene and region,15,102956280,102956607,328,*,328,23,0.625,0.718476191,0.070121951,2.74E-14,CpGisland,TRUE,U13,Hc-P
9663,cg26316946,0.0000257,0.00000601,4.275680378,0.0000254,gain,ns,-0.0000124,0.0000102,-1.219311211,0.223653023,neg,ns,0.0060645,0.002990709,2.027779721,0.043437776,pos,ns,1.362132417,-0.0000883,0.00010285,-0.858973672,0.391018747,neg,ns,0.076569146,Grik2,Grik2_fiveUTR,10,49783444,49783493,49783444,49783445,50,-,CGCCAAGGAACAACCTTCCACTGCAAGGAATGGTGGGACATCCATGTTAG,5' UTR,10,49094833,49788766,693934,2,Grik2-207,5273,Grik2-207;Grik2-202;Grik2-205;Grik2-204;Grik2-201;Grik2-210,Grik2;Grik2;Grik2;Grik2;Grik2;Grik2,0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,12,14806,ENSMUSG00000056073,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
23285,cg19411846,0.0000779,0.00000817,9.531802424,4.69E-19,gain,yes,-0.0000169,0.0000139,-1.219290979,0.223660688,neg,ns,0.000809248,0.004066161,0.199020042,0.842377535,pos,ns,0.074493224,-0.00000834,0.000139835,-0.059636582,0.952483508,neg,ns,0.874541598,Eri3,Eri3_Intron,4,117647261,117647310,117647309,117647310,50,+,AGCAAAGTAGACGATGTTATTCTTCACTAGTTACTGCAATCTTCTCCCCG,"Intron (Eri3-201/Eri3, intron 7 of 8)",4,117550365,117674297,123933,1,Eri3-201,96896,Eri3-201;Eri3-206;Eri3-203,Eri3;Eri3;Eri3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,82,97,140546,ENSMUSG00000033423,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25022,cg00293511,0.00000383,0.00000168,2.282445842,0.023140121,gain,ns,-0.00000347,0.00000285,-1.219137841,0.223718713,neg,ns,-0.000608608,0.00083501,-0.728862315,0.466636158,neg,ns,0.331021612,0.0000265,0.0000287,0.921605324,0.357451149,pos,ns,0.062238142,Fgfr2,Fgfr2_Intron,7,131552417,131552466,131552465,131552466,50,+,GTTAATGAGCTGACACCATGATTAAAGCTGACCATTTGTAATGTGTCTCG,"Intron (Hmx2-202/Hmx2, intron 1 of 2)",7,130162451,133123350,2960900,2,Fgfr2-217,1570884,Fgfr2-217;Hmx2-202;Hmx2-201,Fgfr2;Hmx2;Hmx2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,58,79,14183,ENSMUSG00000030849,mapped to different genes,7,131552465,131552790,326,*,326,26,0.641104295,0.778328742,0.079754601,1.69E-17,CpGisland,TRUE,U13,Hc-P
1010,cg07421453,0.0000174,0.00000344,5.079036561,0.000000656,gain,yes,-0.00000712,0.00000584,-1.219121451,0.223724924,neg,ns,-0.002303829,0.001709897,-1.347349938,0.178851512,neg,ns,0.747507384,0.0000451,0.0000588,0.766490517,0.443967776,pos,ns,0.837631092,Grm1,Grm1_threeUTR,10,10698045,10698094,10698093,10698094,50,-,TACACATTCACTGCAGTGTGGGGGTTTTCAAAGCTGCACATGTGCCGACG,3' UTR,10,10686059,11082356,396298,2,Grm1-201,384262,Grm1-201;Grm1-203;Grm1-202;Grm1-205,Grm1;Grm1;Grm1;Grm1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,7,14816,ENSMUSG00000019828,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2660,cg15245927,0.00000331,0.00000245,1.349972968,0.178009515,gain,ns,-0.00000508,0.00000417,-1.21891472,0.223803275,neg,ns,0.000499733,0.001221764,0.4090261,0.682802945,pos,ns,0.165704615,-0.0000382,0.000042,-0.910262074,0.363391524,neg,ns,0.951459883,Vcl,Vcl_Intron,14,21027243,21027292,21027243,21027244,50,+,CGGCTCAGTCCTTGCATCGGGAAGCTACCAAGTGGTCTAGTAAGGTACTG,"Intron (Vcl-201/Vcl, intron 18 of 20)",14,20929398,21033676,104279,1,Vcl-201,97845,Ap3m1-206;Vcl-201;Vcl-202,Ap3m1;Vcl;Vcl,25158;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,8,22330,ENSMUSG00000021823,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4121,cg18111271,-0.0000442,0.00000775,-5.703856476,2.73E-08,loss,yes,0.000016,0.0000132,1.21877658,0.223855642,pos,ns,-0.006698696,0.003854839,-1.737737023,0.083250233,neg,ns,1.079614543,0.000284775,0.000132568,2.14814813,0.032476617,pos,ns,0.872474499,Zfp703,Zfp703_Intergenic_upstream,8,26914396,26914445,26914444,26914445,50,-,TTCTGCCTTGTTCAGGAGTCCATCCATCATCAAGACAATAAAGAAAACCG,Distal Intergenic,8,26977325,26978733,1409,1,Zfp703-201,-62929,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,11,353310,ENSMUSG00000085795,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19504,cg01700051,-0.000111615,0.0000157,-7.101312828,8.49E-12,loss,yes,0.0000325,0.0000267,1.218701356,0.223884162,pos,ns,-0.010188946,0.007822747,-1.302476658,0.193720285,neg,ns,0.7128249,-0.0000268,0.000269024,-0.099788862,0.920576451,neg,ns,0.261031011,Foxp1,Foxp1_Intron,6,99485224,99485273,99485224,99485225,50,+,CGGCTGTGTGCCACATCTGCAGTTGATGAAATGGAGAGCAGAAGTGTGGC,"Intron (Foxp1-220/Foxp1, intron 1 of 19)",6,98929189,99520997,591809,2,Foxp1-220,35724,Foxp1-220;Foxp1-224;Foxp1-227;Foxp1-216;Gm20696-201;Gm20696-203,Foxp1;Foxp1;Foxp1;Foxp1;Gm20696;Gm20696,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,87,108655,ENSMUSG00000030067,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8877,cg03637988,0.000074,0.0000167,4.429938044,0.0000131,gain,ns,-0.0000346,0.0000284,-1.218561336,0.223937254,neg,ns,0.027841754,0.008319219,3.346678722,0.000918527,pos,ns,3.036908233,-0.000762795,0.000286097,-2.666207031,0.008073604,neg,ns,0.444612468,Sik3,Sik3_threeUTR,9,46202130,46202179,46202130,46202131,50,-,CGAAAGGTCACCTCTGCCCAAGGAGGTGGTAGAGTGCAGCTTCAACATTT,3' UTR,9,46012820,46224194,211375,1,Sik3-204,189310,Sik3-204;Sik3-202;Sik3-201;Sik3-203;Sik3-206,Sik3;Sik3;Sik3;Sik3;Sik3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,5,70661,ENSMUSG00000034135,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11921,cg09645742,0.00000993,0.00000483,2.053763034,0.040837125,gain,ns,0.00001,0.00000821,1.218475754,0.223969709,pos,ns,0.003394186,0.002406185,1.410608843,0.159362642,pos,ns,0.79761348,-0.0000181,0.0000827,-0.218892624,0.826877734,neg,ns,0.575598988,Gm47241,Gm47241_Intergenic_upstream,9,61677134,61677183,61677134,61677135,50,-,CGTTGGAGGCTGGTCTGGGTCCCCATCTGCTAAGCAGCCTGTTGTGTGAA,Distal Intergenic,9,61763084,61763442,359,1,Gm47241-201,-85950,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,6,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17942,cg14937633,0.000208418,0.0000188,11.09648429,2.57E-24,gain,yes,-0.0000389,0.0000319,-1.218469467,0.223972094,neg,ns,0.026874843,0.009348161,2.874880079,0.004321429,pos,ns,2.364372616,-0.001089398,0.000321482,-3.388670245,0.000793062,neg,ns,0.331848295,Runx1,Runx1_fiveUTR,16,92695741,92695790,92695741,92695742,50,+,CGGGGATACGCATCACAACAAGCCGATTGAGTTAGGACCCTGCAAACAGC,5' UTR,16,92601466,92826149,224684,2,Runx1-201,130359,Runx1-201;Runx1-202;Runx1-203;Runx1-205;Runx1-206;Runx1-204,Runx1;Runx1;Runx1;Runx1;Runx1;Runx1,0;0;0;-246;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,7,10,12394,ENSMUSG00000022952,mapped to different genes,16,92695398,92695878,481,*,481,36,0.636174636,0.74,0.074844075,5.11E-23,CpGisland,TRUE,U3,Pr-B
24815,cg17080525,0.0000312,0.00000426,7.327397221,2.05E-12,gain,yes,-0.00000882,0.00000724,-1.218439205,0.223983571,neg,ns,0.004925394,0.002120514,2.322736349,0.02084043,pos,ns,1.681093329,-0.000136933,0.0000729,-1.877745153,0.061354721,neg,ns,0.057321561,Ikzf4,Ikzf4_fiveUTR,10,128645814,128645863,128645862,128645863,50,-,GTCTCAGTGGCAGGCAGGGGTGAGCCCAGCCACTCACCTTCCAGGAAGCG,Promoter (<=1kb),10,128632415,128645826,13412,2,Ikzf4-203,0,Ikzf4-201;Ikzf4-209;Ikzf4-210;Ikzf4-203;Ikzf4-208;Ikzf4-204;Ikzf4-206;Ikzf4-207;Ikzf4-205;Ikzf4-202,Ikzf4;Ikzf4;Ikzf4;Ikzf4;Ikzf4;Ikzf4;Ikzf4;Ikzf4;Ikzf4;Ikzf4,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,6,22781,ENSMUSG00000002578,conserved gene and region,10,128645862,128645988,127,*,127,10,0.669291339,0.71509009,0.078740158,0.000000615,CpGisland,TRUE,NA,NRS
9985,cg06025787,0.000042,0.00000907,4.629031493,0.00000541,gain,ns,-0.0000188,0.0000154,-1.218363809,0.224012168,neg,ns,0.003370333,0.004516094,0.746293856,0.456055489,pos,ns,0.340982313,-0.0000884,0.000155308,-0.56921497,0.569622451,neg,ns,0.719119135,Skap2,Skap2_Intergenic_downstream,6,51790470,51790519,51790518,51790519,50,+,ATAGGCTGTCCTGCTGTTACATGGCTTATGCAAACTTTACATTTATCACG,Distal Intergenic,6,51859104,51871929,12826,2,Skap2-207,81410,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,19,54353,ENSMUSG00000059182,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6973,cg16915042,-0.00000823,0.00000541,-1.522632241,0.12887014,loss,ns,0.0000112,0.00000918,1.218131659,0.224100235,pos,ns,0.002842216,0.0026903,1.056468217,0.291576957,pos,ns,0.535246801,-0.000213801,0.0000925,-2.310878531,0.02149551,neg,ns,0.886723662,Kctd16,Kctd16_Intron,18,40260993,40261042,40260993,40260994,50,+,CGTGCAGCTGCTTAGCCATAATTATTTAATTAGAAGCTGCCAACTGTGCC,"Intron (Kctd16-206/Kctd16, intron 2 of 2)",18,40257023,40531630,274608,1,Kctd16-206,3970,Kctd16-202;Kctd16-206;Kctd16-201;Kctd16-203,Kctd16;Kctd16;Kctd16;Kctd16,4031;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,3,383348,ENSMUSG00000051401,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4445,cg05175119,0.000121651,0.0000137,8.895080178,4.95E-17,gain,yes,-0.0000283,0.0000232,-1.21812275,0.224103616,neg,ns,0.017005346,0.006806783,2.498294223,0.012996911,pos,ns,1.886159856,-0.00061265,0.000234085,-2.61721322,0.009299807,neg,ns,0.083676179,Mb21d2,Mb21d2_Promoter,16,28929994,28930043,28930042,28930043,50,-,GAAACAATGTGAAATTCACCAGCTCTGAAATCAACAAGCTGCCGGCTCCG,Promoter (<=1kb),16,28826176,28929673,103498,2,Mb21d2-201,-370,Mb21d2-201,Mb21d2,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,4,239796,ENSMUSG00000051065,conserved gene and region,16,28930016,28930242,227,*,227,18,0.59030837,0.912053571,0.079295154,3.19E-12,CpGisland,TRUE,U1,Pr-A
9249,cg05912002,-0.000019,0.00000739,-2.574535168,0.010501309,loss,ns,0.0000153,0.0000125,1.218111467,0.224107897,pos,ns,0.002264221,0.003675851,0.615971865,0.538365093,pos,ns,0.268923107,0.000061,0.000126412,0.482898666,0.629508532,pos,ns,0.93590381,Cadm1,Cadm1_Intron,9,47847051,47847100,47847099,47847100,50,+,TCCTTCACATATGACTTCACAAATCATGTAAAGTTAAAAGATTTTTACCG,"Intron (Cadm1-204/Cadm1, intron 8 of 9)",9,47530173,47853385,323213,1,Cadm1-204,316878,Cadm1-204;Cadm1-209;Cadm1-206;Cadm1-202;Cadm1-203;Cadm1-201,Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,77,54725,ENSMUSG00000032076,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6729,cg23593328,-0.0000235,0.00000606,-3.87994535,0.000127643,loss,ns,0.0000125,0.0000103,1.217981374,0.22415726,pos,ns,0.004062245,0.003017856,1.346069723,0.179263543,pos,ns,0.746508025,-0.000265301,0.000103784,-2.556282211,0.011056237,neg,ns,0.856321423,Gm12129,Gm12129_Intergenic_upstream,11,38193931,38193980,38193931,38193932,50,-,CGTCTGCCAATAGATTTGGCTGTCAACCACCCAAAAGCACTGTCACTCAG,Distal Intergenic,11,38219069,38220215,1147,1,Gm12129-201,-25138,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,11,276941,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26748,cg06594236,-0.0000219,0.0000159,-1.374554227,0.170262488,loss,ns,-0.0000329,0.000027,-1.217795137,0.224227941,neg,ns,-0.002403364,0.007924164,-0.303295533,0.761868092,neg,ns,0.118120215,0.000148019,0.000272511,0.54316473,0.587406724,pos,ns,0.835269374,1700025G04Rik,1700025G04Rik_fiveUTR,1,152006600,152006649,152006648,152006649,50,-,TTGAACAGTGGCAACATGCTTGGCGGAGGCACAGCCCATAGTCTCATTCG,5' UTR,1,151852403,152089970,237568,2,1700025G04Rik-204,83321,1700025G04Rik-204;1700025G04Rik-201;1700025G04Rik-202,1700025G04Rik;1700025G04Rik;1700025G04Rik,0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,2,69399,ENSMUSG00000032666,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
494,cg07187097,-0.00000243,0.00000118,-2.068158049,0.039454275,loss,ns,0.00000243,0.000002,1.217765051,0.224239361,pos,ns,0.000512338,0.000585608,0.874882392,0.382315214,pos,ns,0.417578419,-0.0000114,0.0000201,-0.563869075,0.573250921,neg,ns,0.971071655,Celf2,Celf2_threeUTR,2,6553921,6553970,6553921,6553922,50,-,CGTCAAGCCTGTGGCGCCAAGTCCTCCATTCAGAGCCGCCATACCTGAGA,3' UTR,2,6539694,7396000,856307,2,Celf2-201,842030,Celf2-201;Celf2-202;Celf2-204;Celf2-214;Celf2-206;Celf2-226;Celf2-223;Celf2-224;Celf2-221;Celf2-205;Celf2-211;Celf2-213;Celf2-225;Celf2-228;Celf2-216;Celf2-217,Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,24,14007,ENSMUSG00000002107,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3648,cg23344477,0.00000376,0.00000262,1.437325421,0.151634121,gain,ns,0.00000542,0.00000445,1.217613354,0.224296947,pos,ns,0.004419383,0.001303376,3.39072068,0.000787365,pos,ns,3.103823796,-0.0000907,0.0000448,-2.022767777,0.043955269,neg,ns,0.055949465,Erfl,Erfl_Promoter,7,24944902,24944951,24944902,24944903,50,+,CGATCGATGGAATATAATTTTCCTCAAACTCGGAAAATAAAGTTCAGAGC,Promoter (<=1kb),7,24927445,24944494,17050,2,Erfl-201,-408,Erfl-201,Erfl,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,29,36,,NA,mapped to different genes,7,24944790,24944933,144,*,144,26,0.736111111,1.340494092,0.180555556,8.27E-28,CpGisland,TRUE,U3,Pr-B
7668,cg18018658,-0.00000612,0.00000293,-2.085684331,0.037824726,loss,ns,-0.00000607,0.00000498,-1.217328827,0.224404987,neg,ns,0.000246923,0.001459655,0.169165502,0.865776793,pos,ns,0.062594059,-0.0000485,0.0000502,-0.966543688,0.334525622,neg,ns,0.938437605,Zbtb20,Zbtb20_Exon,16,43618663,43618712,43618663,43618664,50,-,CGTCTGCTCCGTCTGCCCAGCAAAGTTTGACCAAATCGAGCAGTTCAACG,"Exon (Zbtb20-204/Zbtb20, exon 15 of 15)",16,42907652,43642602,734951,1,Zbtb20-204,711011,Zbtb20-204;Zbtb20-201;Zbtb20-203;Zbtb20-202;Zbtb20-205,Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,17,98,56490,ENSMUSG00000022708,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4838,cg26064506,0.000018,0.00000618,2.916846932,0.003794055,gain,ns,0.0000128,0.0000105,1.217202312,0.224453038,pos,ns,-0.001668857,0.003077108,-0.542346027,0.587969807,neg,ns,0.230644975,0.0000283,0.000105821,0.267743955,0.789074468,pos,ns,0.698674213,Ctnnd2,Ctnnd2_Exon,15,30920751,30920800,30920751,30920752,50,-,CGTTCACTGCCAGAGGGGGCTCCCTGCCTGCCACAGGTGAGAGCCAGCTC,"Exon (Ctnnd2-201/Ctnnd2, exon 16 of 23)",15,30172593,31029341,856749,1,Ctnnd2-201,748158,Ctnnd2-201;Ctnnd2-203,Ctnnd2;Ctnnd2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,10,18163,ENSMUSG00000022240,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12379,cg12756264,-0.0000276,0.00000987,-2.799087116,0.005445915,loss,ns,0.0000204,0.0000168,1.217177963,0.224462287,pos,ns,0.000711184,0.004910234,0.144837164,0.884933559,pos,ns,0.053089335,-0.000204121,0.000168863,-1.208801245,0.227660399,neg,ns,0.811858456,Klf7,Klf7_Exon,1,64078733,64078782,64078781,64078782,50,+,AAGTGGGAGCTTTTTGTATAAACTTTCCGGCACCCGTTAAACTGACAGCG,"Exon (Klf7-202/Klf7, exon 2 of 4)",1,64029447,64121491,92045,2,Klf7-202,42709,Klf7-202;Klf7-201;Klf7-203,Klf7;Klf7;Klf7,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,21,93691,ENSMUSG00000025959,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12963,cg07537139,-0.0000486,0.00000829,-5.865566739,1.15E-08,loss,yes,0.0000171,0.0000141,1.217130982,0.224480133,pos,ns,-0.004018318,0.004126061,-0.973887189,0.330871865,neg,ns,0.480340161,-0.000207225,0.000141895,-1.460413553,0.145189168,neg,ns,0.631034547,Brinp1,Brinp1_Exon,4,68792948,68792997,68792948,68792949,50,-,CGGTTCTGCAGGTCCCAGTCATTGCCCCAGTGCTGATGGATGCTTCCGAT,"Exon (Brinp1-201/Brinp1, exon 7 of 8)",4,68761514,68954397,192884,2,Brinp1-201,161400,Brinp1-201;Brinp1-203,Brinp1;Brinp1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,7,56710,ENSMUSG00000028351,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15537,cg24221639,-0.0000118,0.00000238,-4.935655527,0.00000131,loss,yes,-0.00000493,0.00000405,-1.217035035,0.224516583,neg,ns,-0.002584099,0.00118658,-2.177770153,0.03017677,neg,ns,1.520327241,0.0000405,0.0000408,0.992071963,0.321936139,pos,ns,0.929925436,Adgrl3,Adgrl3_threeUTR,5,81663401,81663450,81663401,81663402,50,+,CGCTCTTGCAGAGCCTATGTCCAGGTACTTTCTGCGTTTTTATAAATGTG,3' UTR,5,81020571,81796634,776064,1,Adgrl3-223,642830,Adgrl3-223;Adgrl3-231;Adgrl3-226;Adgrl3-203;Adgrl3-211;Adgrl3-217;Adgrl3-232;Adgrl3-207;Adgrl3-205;Adgrl3-206;Adgrl3-208;Adgrl3-212;Adgrl3-213;Adgrl3-214;Adgrl3-215;Adgrl3-216;Adgrl3-209;Adgrl3-218;Adgrl3-219;Adgrl3-204;Adgrl3-210;Adgrl3-201;Adgrl3-202;Adgrl3-221;Adgrl3-233;Adgrl3-220,Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;3457;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,13,319387,ENSMUSG00000037605,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23491,cg08989499,-0.00000385,0.00000127,-3.044756846,0.002528377,loss,ns,0.00000262,0.00000215,1.216718591,0.224636829,pos,ns,0.000541843,0.000629718,0.860454158,0.390203718,pos,ns,0.408708596,-0.00000174,0.0000217,-0.08029263,0.936056329,neg,ns,0.965743329,Gm9267,Gm9267_Intergenic_downstream,12,118647957,118648006,118648005,118648006,50,+,GGGCCGTGTGCTTACAGATACCTGTCAAATGTCTGTCATCTTAGCTATCG,Distal Intergenic,12,118602677,118603080,404,1,Gm9267-201,45280,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,20,668611,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13233,cg20098229,-0.00000458,0.00000351,-1.304971557,0.192870363,loss,ns,-0.00000725,0.00000596,-1.21668472,0.224649702,neg,ns,-0.004156739,0.001745025,-2.382051348,0.017819414,neg,ns,1.749106592,0.000102916,0.00006,1.714952369,0.08735329,pos,ns,0.866195656,Nlgn2,Nlgn2_Exon,11,69828134,69828183,69828134,69828135,50,-,CGCAGGGCCTGGATCTGGTCCAGGAGCCCATAGTTGCCTTTTGCAGCCTG,"Exon (Nlgn2-201/Nlgn2, exon 4 of 7)",11,69823122,69834849,11728,2,Nlgn2-201,6666,Nlgn2-201;Nlgn2-202;Nlgn2-203;Nlgn2-204,Nlgn2;Nlgn2;Nlgn2;Nlgn2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,17,216856,ENSMUSG00000051790,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5508,cg27108010,0.00000754,0.00000458,1.647902596,0.100385793,gain,ns,-0.00000946,0.00000778,-1.216678007,0.224652253,neg,ns,-0.000282115,0.002278221,-0.123831275,0.901529119,neg,ns,0.045020241,0.0000365,0.0000783,0.465995979,0.64154563,pos,ns,0.898345801,Kalrn,Kalrn_threeUTR,16,34153361,34153410,34153409,34153410,50,-,GGGTGATTGGAGTCCTGGTGGGAGGTCCCAACGGTGCCACGGCTAACCCG,3' UTR,16,33975495,34456917,481423,2,Kalrn-201,303507,Kalrn-201;Kalrn-209;Kalrn-217;Kalrn-208;Kalrn-207;Kalrn-206;Kalrn-202;Kalrn-205;Kalrn-204;Kalrn-218,Kalrn;Kalrn;Kalrn;Kalrn;Kalrn;Kalrn;Kalrn;Kalrn;Kalrn;Kalrn,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,22,545156,ENSMUSG00000061751,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17475,cg05976351,-0.00000355,0.000000955,-3.717441207,0.000238755,loss,ns,0.00000197,0.00000162,1.216674824,0.224653463,pos,ns,0.001200436,0.000475319,2.525538795,0.012050277,pos,ns,1.919002952,-0.0000497,0.0000163,-3.040050315,0.002567046,neg,ns,0.039744098,Crebzf,Crebzf_Exon,7,90444010,90444059,90444058,90444059,50,-,TCTCCATGTGGACAAGGATAAGGTGTCGGTGGAGTTCTGCTCGGCGTGCG,"Exon (Crebzf-201/Crebzf, exon 1 of 1)",7,90442729,90446104,3376,1,Crebzf-201,1281,Crebzf-201;Crebzf-203;Crebzf-204;Crebzf-205;Crebzf-202;Crebzf-208;Crebzf-207;Crebzf-209;Crebzf-206,Crebzf;Crebzf;Crebzf;Crebzf;Crebzf;Crebzf;Crebzf;Crebzf;Crebzf,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,9,233490,ENSMUSG00000051451,conserved gene and region,7,90443049,90444118,1070,*,1070,137,0.710280374,1.028961703,0.128037383,4.26E-120,CpGisland,TRUE,U1,Pr-A
21551,cg07349086,-0.00000958,0.00000383,-2.505285209,0.012747901,loss,ns,-0.00000791,0.0000065,-1.216587702,0.224686578,neg,ns,-0.004564202,0.001904171,-2.396950111,0.017124027,neg,ns,1.766394105,0.0000262,0.0000655,0.400291511,0.689217526,pos,ns,0.85278057,Ppp1r12a,Ppp1r12a_Exon,10,108253335,108253384,108253335,108253336,50,+,CGTTTGTGGGCTGAGGATAGTACTGAGAAAGAAAAGGACAGTGTTCCTAC,"Exon (Ppp1r12a-205/Ppp1r12a, exon 14 of 25)",10,108162193,108277351,115159,1,Ppp1r12a-205,91142,Ppp1r12a-205;Ppp1r12a-201;Ppp1r12a-208;Ppp1r12a-203;Ppp1r12a-204;Ppp1r12a-202,Ppp1r12a;Ppp1r12a;Ppp1r12a;Ppp1r12a;Ppp1r12a;Ppp1r12a,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,8,17931,ENSMUSG00000019907,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27603,cg04976865,0.000000294,0.00000487,0.060294382,0.951960027,gain,ns,-0.0000101,0.00000827,-1.216330027,0.224784542,neg,ns,0.0005154,0.002423079,0.212704594,0.831697183,pos,ns,0.08003477,-0.000224823,0.0000833,-2.698004442,0.007357678,neg,ns,0.727353982,Dedd,Dedd_threeUTR,1,171340967,171341016,171341015,171341016,50,+,CCTGGGCTCCATCATCTGTGACATCAAGTTCTCTGAGCTCACCTACCTCG,3' UTR,1,171329145,171342331,13187,1,Dedd-204,11822,Dedd-204;Dedd-203;Dedd-201;Dedd-209;Dedd-206;Dedd-208;Dedd-210;Dedd-202;Dedd-207;Dedd-205;Nit1-206;Nit1-203;Nit1-201;Nit1-205;Nit1-202;Nit1-208;Nit1-204;Nit1-207;Pfdn2-202;Pfdn2-201,Dedd;Dedd;Dedd;Dedd;Dedd;Dedd;Dedd;Dedd;Dedd;Dedd;Nit1;Nit1;Nit1;Nit1;Nit1;Nit1;Nit1;Nit1;Pfdn2;Pfdn2,0;0;0;0;0;10881;10612;0;0;0;0;0;0;0;0;0;0;4629;-4654;-4714,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,4,21945,ENSMUSG00000013973,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13429,cg26736877,0.0000015,0.00000248,0.602800985,0.54708181,gain,ns,-0.00000513,0.00000422,-1.216314964,0.224790269,neg,ns,0.001032976,0.001235523,0.836063833,0.403762954,pos,ns,0.393873531,-0.0000767,0.0000425,-1.806272789,0.071845462,neg,ns,0.037661014,Sp5,Sp5_fiveUTR,2,70474981,70475030,70475029,70475030,50,+,ATTTGCTTTCGCTTCTGAAAGAGCCGCTATTCTTTGATGATTGGGTAGCG,Promoter (<=1kb),2,70474923,70477729,2807,1,Sp5-201,58,Sp5-201,Sp5,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,7,11,64406,ENSMUSG00000075304,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
13781,cg05224118,-0.00000505,0.00000152,-3.31479161,0.001025891,loss,ns,-0.00000315,0.00000259,-1.216213146,0.224828988,neg,ns,-0.002140837,0.000758599,-2.822094137,0.005079306,neg,ns,2.29419563,0.0000323,0.0000261,1.239493853,0.216100187,pos,ns,0.034019277,Ube2g1,Ube2g1_Intron,11,72608422,72608471,72608470,72608471,50,+,GGTTGACTTTTTAGGGGGTTGGCTCCTACTCTGCTAGGACTGTGTGCGCG,"Intron (Ube2g1-201/Ube2g1, intron 1 of 5)",11,72607283,72686481,79199,1,Ube2g1-201,1139,Ube2g1-201;Ube2g1-203;Ube2g1-202,Ube2g1;Ube2g1;Ube2g1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,5,67128,ENSMUSG00000020794,conserved gene and region,11,72608470,72608638,169,*,169,13,0.627218935,0.83219697,0.076923077,8.77E-09,CpGisland,TRUE,NA,NRS
12486,cg00571033,0.0000861,0.00000641,13.43336622,9.75E-33,gain,yes,-0.0000132,0.0000109,-1.216149862,0.224853055,neg,ns,0.00660675,0.003191605,2.070039748,0.039276497,pos,ns,1.405867253,-0.0000121,0.000109759,-0.110358158,0.912196745,neg,ns,0.161090085,Kif13b,Kif13b_Exon,14,64590681,64590730,64590681,64590682,50,-,CGGACCTTGATTTAAATGTCCATACAATTAAGGCACGCGGTGAATGCCAA,"Exon (Mir124a-1hg-201/Mir124a-1hg-201, exon 4 of 4)",14,64647265,64724760,77496,1,Kif13b-202,-56584,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,16554,ENSMUSG00000060012,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
24797,cg22959254,-0.0000131,0.00000258,-5.050577495,0.000000753,loss,yes,-0.00000534,0.00000439,-1.216146792,0.224854223,neg,ns,0.00025753,0.001286499,0.200178776,0.841472021,pos,ns,0.07496032,-0.000029,0.0000442,-0.654406089,0.513335415,neg,ns,0.947289732,Smarcc2,Smarcc2_Exon,10,128488280,128488329,128488280,128488281,50,-,CGGATCCGCCGCAGCCCAAAGCCCTGCCATTGTGGCAGCTGTTCAGGGCA,"Exon (Smarcc2-203/Smarcc2, exon 27 of 28)",10,128459248,128490482,31235,1,Smarcc2-205,29032,Myl6-201;Myl6-213;Myl6-212;Myl6-202;Myl6-206;Myl6-209;Myl6-211;Myl6-205;Myl6-203;Myl6-214;Myl6-208;Myl6-215;Myl6-207;Myl6-210;Myl6-204;Smarcc2-205;Smarcc2-201;Smarcc2-202;Smarcc2-203,Myl6;Myl6;Myl6;Myl6;Myl6;Myl6;Myl6;Myl6;Myl6;Myl6;Myl6;Myl6;Myl6;Myl6;Myl6;Smarcc2;Smarcc2;Smarcc2;Smarcc2,0;0;0;0;0;0;0;0;0;0;0;5500;5464;5816;5245;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,16,68094,ENSMUSG00000025369,conserved gene and region,10,128488162,128488290,129,*,129,10,0.658914729,0.808270677,0.07751938,0.000000711,CpGisland,TRUE,U10,Tr-S
16418,cg05052463,0.000147061,0.00000918,16.02491312,1.61E-42,gain,yes,-0.000019,0.0000156,-1.216145517,0.224854708,neg,ns,0.00655952,0.004567493,1.436131421,0.151973282,pos,ns,0.818232757,0.000208876,0.000157076,1.329778342,0.184568926,pos,ns,0.685380453,Fbxw7,Fbxw7_fiveUTR,3,84952158,84952207,84952158,84952159,50,-,CGGGTTCCCTGGAGCGGATCACCATATAATTGATGTGCAGTCTGCATTGC,5' UTR,3,84815268,84979198,163931,1,Fbxw7-204,136890,Fbxw7-204;Fbxw7-205;Fbxw7-203;Fbxw7-202;Fbxw7-201;Gm37240-203,Fbxw7;Fbxw7;Fbxw7;Fbxw7;Fbxw7;Gm37240,0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,10,50754,ENSMUSG00000028086,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23783,cg26724252,0.0000215,0.00000739,2.913664441,0.003831887,gain,ns,-0.0000153,0.0000125,-1.215852319,0.224966239,neg,ns,0.002348928,0.003676235,0.63894932,0.52332771,pos,ns,0.281226269,-0.000170599,0.000126425,-1.349404955,0.178191596,neg,ns,0.592670205,Lhx5,Lhx5_Intergenic_upstream,5,120366222,120366271,120366270,120366271,50,+,CCAGGGTCCCATAATCCTTTGGTGCTAATTCAAGTGGTGGCCGGCCGGCG,Distal Intergenic,5,120431699,120441223,9525,1,Lhx5-201,-65428,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,14,16873,ENSMUSG00000029595,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12612,cg03459823,-0.00000476,0.00000286,-1.66069104,0.097786558,loss,ns,0.00000592,0.00000487,1.215822423,0.224977613,pos,ns,-0.000257589,0.001425663,-0.180680328,0.856736563,neg,ns,0.067152698,0.0000277,0.000049,0.565731832,0.571985344,pos,ns,0.969682722,Csrnp3,Csrnp3_Intergenic_upstream,2,65833153,65833202,65833153,65833154,50,+,CGATCAATTTTCCATTCAAGGGTAATGTAATGTTTGGGGGAAAGCCAACT,Distal Intergenic,2,65845767,66031546,185780,1,Csrnp3-204,-12565,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,77771,ENSMUSG00000044647,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23801,cg19971619,0.00000435,0.00000339,1.281960236,0.200814503,gain,ns,-0.000007,0.00000576,-1.215700198,0.225024121,neg,ns,0.00131095,0.001687877,0.776686005,0.437936265,pos,ns,0.35858909,-0.000134276,0.000058,-2.313279034,0.02136146,neg,ns,0.907644787,Kdm5a,Kdm5a_threeUTR,6,120415274,120415323,120415322,120415323,50,-,GCCTTTCTACCCAATGTGTTGTCCTTGAAAGAAGCCTTACAAAAGGCTCG,3' UTR,6,120364124,120419473,55350,1,Kdm5a-206,51150,Kdm5a-206;Kdm5a-201;Kdm5a-204;Kdm5a-203,Kdm5a;Kdm5a;Kdm5a;Kdm5a,0;0;0;9471,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,7,214899,ENSMUSG00000030180,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13143,cg07788784,0.00000152,0.0000018,0.845133264,0.398688234,gain,ns,-0.00000372,0.00000306,-1.215470188,0.225111659,neg,ns,0.000100186,0.000895521,0.111874792,0.910995087,pos,ns,0.040483965,-0.0000432,0.0000308,-1.401470743,0.162073714,neg,ns,0.974055353,Efnb3,Efnb3_Exon,11,69556122,69556171,69556122,69556123,50,+,CGTCTCCGCCAACACATGGCACCCCCAGCCCCTGCCACGCCCAGCAAGAG,"Exon (Efnb3-201/Efnb3, exon 5 of 5)",11,69554092,69560205,6114,2,Efnb3-201,4034,Efnb3-201,Efnb3,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,6,13643,ENSMUSG00000003934,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26451,cg06370256,0.0000371,0.00000742,5.000854894,0.000000957,gain,yes,-0.0000153,0.0000126,-1.215450726,0.225119067,neg,ns,0.005767858,0.003693696,1.561540966,0.119416419,pos,ns,0.922935955,-0.000184286,0.000127026,-1.450776945,0.147853078,neg,ns,0.021758719,Foxa2,Foxa2_Promoter,2,148045585,148045634,148045585,148045586,50,+,CGGCCACGAAGAGGATTTGGAGGCGCCGCAAGTCAATATTTGATCACAAA,Promoter (<=1kb),2,148042877,148045948,3072,2,Foxa2-202,314,Foxa2-202;Foxa2-201;Foxa2-204;Foxa2-203,Foxa2;Foxa2;Foxa2;Foxa2,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,4,25,15376,ENSMUSG00000037025,conserved gene and region,2,148045514,148045612,99,*,99,10,0.656565657,0.955598456,0.101010101,5.67E-08,CpGisland,TRUE,U3,Pr-B
7720,cg02030045,0.00000314,0.00000529,0.593937411,0.552987129,gain,ns,0.0000109,0.00000898,1.215394442,0.225140492,pos,ns,0.002721929,0.002631793,1.034248971,0.301825926,pos,ns,0.520243458,0.0000807,0.0000905,0.892021767,0.37307313,pos,ns,0.945890168,Arhgap15,Arhgap15_Intron,2,43978752,43978801,43978752,43978753,50,+,CGCTAAATGTATAGAATCAGCTTCTTGCTAAAAACTACAATTACAGGTGA,"Intron (Arhgap15-203/Arhgap15, intron 6 of 14)",2,43748824,44395953,647130,1,Arhgap15-203,229928,Arhgap15-203;Arhgap15-202;Arhgap15-201,Arhgap15;Arhgap15;Arhgap15,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,72,78,76117,ENSMUSG00000049744,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7768,cg07961588,0.0000293,0.0000091,3.222903266,0.001404058,gain,ns,0.0000188,0.0000155,1.215231307,0.2252026,pos,ns,0.00764237,0.004530066,1.687033077,0.09260292,pos,ns,1.033375316,-0.000150443,0.000155789,-0.965684491,0.334954816,neg,ns,0.774799506,Arhgap15,Arhgap15_Intron,2,44241307,44241356,44241355,44241356,50,+,AGAGGGACATTTCAAAATATCTGACAGATTTCAACAATGTGAAAACCCCG,"Intron (Arhgap15-203/Arhgap15, intron 11 of 14)",2,43748824,44395953,647130,1,Arhgap15-203,492483,Arhgap15-203;Arhgap15-202;Arhgap15-201,Arhgap15;Arhgap15;Arhgap15,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,72,78,76117,ENSMUSG00000049744,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13,cg22025436,0.00000254,0.00000347,0.732275729,0.464553555,gain,ns,-0.00000717,0.0000059,-1.215170504,0.225225751,neg,ns,-0.004851269,0.001729124,-2.805623074,0.005339399,neg,ns,2.27250761,0.0000345,0.0000595,0.57989312,0.562407913,pos,ns,0.825712645,Crem,Crem_threeUTR,18,3268070,3268119,3268118,3268119,50,+,CGATTTTCAAGACATTTGACATATTCTTTCTTCTTCCTGCGACACTCCCG,3' UTR,18,3266048,3327591,61544,2,Crem-230,59472,Crem-230;Crem-228;Crem-204;Crem-233;Crem-201;Crem-203;Crem-239;Crem-219;Crem-220;Crem-234;Crem-209;Crem-229;Crem-213;Crem-212;Crem-206;Crem-202;Crem-208;Crem-224;Crem-237;Crem-211;Crem-217;Crem-223;Crem-232;Crem-215;Crem-216;Crem-231;Crem-222;Crem-205;Crem-218;Crem-225;Crem-235;Crem-207;Crem-236,Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,4,12916,ENSMUSG00000063889,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3182,cg14007606,0.00000659,0.0000034,1.936775066,0.053681319,gain,ns,-0.00000702,0.00000578,-1.215072745,0.225262978,neg,ns,0.001214243,0.001693128,0.717159175,0.473815891,pos,ns,0.324390378,-0.000135597,0.0000582,-2.328779799,0.020513338,neg,ns,0.039336709,Klf9,Klf9_Exon,19,23142152,23142201,23142152,23142153,50,+,CGAAGGGGAAACACGCCTCCGAAAAGAGGCACAAGTGCCCCTACAGTGGC,Promoter (<=1kb),19,23141226,23168134,26909,1,Klf9-201,926,Klf9-201;Klf9-202,Klf9;Klf9,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,13,16601,ENSMUSG00000033863,conserved gene and region,19,23141183,23142172,990,*,990,120,0.684848485,1.033789605,0.121212121,5.63E-102,CpGisland,TRUE,U1,Pr-A
22944,cg00719175,0.000049,0.0000135,3.620608807,0.000343191,gain,ns,-0.000028,0.000023,-1.215069082,0.225264373,neg,ns,-0.006182492,0.006741336,-0.917101829,0.359802203,neg,ns,0.443936182,0.000181777,0.000231834,0.784081866,0.433590769,pos,ns,0.82992608,Gm5357,Gm5357_Intergenic_upstream,8,116315660,116315709,116315660,116315661,50,-,CGTTGACATGTGCATTTCTAAATAATTTCAGGATGTCAACCTGAATAGAC,Distal Intergenic,8,116489186,116491109,1924,1,Gm5357-201,-173526,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,15,15,384868,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19005,cg18341166,0.00000446,0.00000322,1.384196854,0.167293833,gain,ns,-0.00000665,0.00000547,-1.21498012,0.225298253,neg,ns,0.000893371,0.001603216,0.557236733,0.577767804,pos,ns,0.238246663,0.0000134,0.0000551,0.242616288,0.808463102,pos,ns,0.899016218,Med1,Med1_Exon,11,98158129,98158178,98158129,98158130,50,-,CGTTCCCTGTGATTTGCAACAAACTGGTAAGAATTGGGTTCTGAGACACC,"Exon (Med1-203/Med1, exon 17 of 17)",11,98152154,98193260,41107,2,Med1-202,35082,Med1-202;Med1-203;Med1-204;Med1-201;Med1-207,Med1;Med1;Med1;Med1;Med1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,13,19014,ENSMUSG00000018160,conserved gene but different region,11,98158040,98158130,91,*,91,8,0.648351648,0.912280702,0.087912088,0.0000058,CpGisland,TRUE,U10,Tr-S
12252,cg02776586,-0.00000065,0.00000507,-0.128091551,0.898159577,loss,ns,0.0000105,0.00000862,1.214906779,0.225326188,pos,ns,0.004655889,0.002525619,1.843464624,0.066215577,pos,ns,1.17903983,-0.00024266,0.0000869,-2.793822515,0.005533109,neg,ns,0.877618048,Iqch,Iqch_Intron,9,63569488,63569537,63569536,63569537,50,-,TAATTGTGGCCATATGCATGGGCTTAAAACACAATCATGTTTTGAAATCG,"Intron (Iqch-201/Iqch, intron 5 of 21)",9,63421455,63602493,181039,2,Iqch-201,32956,Iqch-201;Iqch-203;Iqch-204;Iqch-202;Iqch-206,Iqch;Iqch;Iqch;Iqch;Iqch,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,22,78250,ENSMUSG00000037801,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13229,cg07042258,-0.00000461,0.00000152,-3.025608079,0.002689122,loss,ns,0.00000314,0.00000259,1.214895156,0.225330615,pos,ns,0.000195777,0.000757945,0.258300106,0.796346709,pos,ns,0.098897811,-0.0000169,0.0000261,-0.649874614,0.516254488,neg,ns,0.963105469,Gm44690,Gm44690_Intergenic_downstream,7,69812931,69812980,69812979,69812980,50,-,AGTCTCTTCATTTTCCCTCTGTTCACGTTATTAGCTTACACATGAGTGCG,Distal Intergenic,7,69883979,69884360,382,2,Gm44690-201,71429,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,24,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24573,cg04606769,0.00000231,0.00000202,1.143425861,0.253744038,gain,ns,0.00000417,0.00000343,1.214844856,0.225349775,pos,ns,0.001355723,0.001005359,1.348496025,0.178483251,pos,ns,0.748402532,-0.0000178,0.0000346,-0.514681756,0.607142175,neg,ns,0.046401774,Maz,Maz_Exon,7,127025308,127025357,127025356,127025357,50,+,AGAAGCTCTTGCCACAGTGGGAGCAGTTGTAGGGCTTGTGCACAGCGCCG,"Exon (Maz-203/Maz, exon 2 of 6)",7,127022130,127026526,4397,2,Maz-203,1169,Gm42742-201;Gm42742-203;Gm42742-204;Gm42742-202;Kif22-202;Kif22-201;Kif22-205;Kif22-206;Maz-203;Maz-201;Maz-204;Maz-202;Maz-206;Maz-205;Prrt2-201;Prrt2-202;Prrt2-205;Prrt2-206;Prrt2-207,Gm42742;Gm42742;Gm42742;Gm42742;Kif22;Kif22;Kif22;Kif22;Maz;Maz;Maz;Maz;Maz;Maz;Prrt2;Prrt2;Prrt2;Prrt2;Prrt2,0;0;0;0;3600;17114;2759;7347;0;0;0;0;0;0;0;0;-4352;-4171;-4953,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,16,17,17188,ENSMUSG00000030678,conserved gene and region,7,127025353,127025621,269,*,269,30,0.669144981,1.002359955,0.111524164,1.16E-24,CpGisland,TRUE,NA,NRS
9021,cg02188796,0.00000151,0.00000905,0.167369197,0.867188687,gain,ns,0.0000187,0.0000154,1.214697975,0.225405731,pos,ns,0.003457706,0.00450383,0.767725669,0.443234549,pos,ns,0.353366394,-0.0000779,0.000154886,-0.502925534,0.615373744,neg,ns,0.764591599,Gm8863,Gm8863_Intergenic_downstream,9,46554062,46554111,46554062,46554063,50,-,CGCTCCCATCTGATATCCATTAGATGTGTCAGGAGAGCCCTGAAAATGTG,Distal Intergenic,9,46713233,46714158,926,2,Gm8863-201,160096,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,20,667890,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17398,cg24536803,0.0000243,0.00000957,2.538618497,0.011618025,gain,ns,-0.0000197,0.0000163,-1.214606791,0.225440474,neg,ns,-0.00143665,0.004762242,-0.301675054,0.763102058,neg,ns,0.117417375,0.000226609,0.000163773,1.383677914,0.167452597,pos,ns,0.35682008,Tox3,Tox3_Intergenic_downstream,8,90064708,90064757,90064756,90064757,50,-,ACAGCTACTGTTTATTCCCAGAAACTCAAATTAATGGTTTTGTTAAATCG,Distal Intergenic,8,90257946,90348126,90181,2,Tox3-202,283418,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,19,244579,ENSMUSG00000043668,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25466,cg16886347,0.0000103,0.00000678,1.524625648,0.128372004,gain,ns,0.000014,0.0000115,1.214480256,0.225488692,pos,ns,0.001518481,0.003374335,0.450009149,0.653018362,pos,ns,0.185074607,-0.00010662,0.000116043,-0.918799011,0.358915044,neg,ns,0.802244039,Ephb2,Ephb2_Intron,4,136773215,136773264,136773263,136773264,50,+,CACTTAATTAGAGCACTCTGCCTTTCTCCCCTCTCTCTAATTAACATGCG,"Intron (Ephb2-202/Ephb2, intron 2 of 15)",4,136647539,136835988,188450,2,Ephb2-202,62724,Ephb2-202;Ephb2-201;Ephb2-203;Ephb2-204,Ephb2;Ephb2;Ephb2;Ephb2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,15,13844,ENSMUSG00000028664,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12519,cg08358401,-0.00000129,0.00000206,-0.623758668,0.533244787,loss,ns,-0.00000425,0.0000035,-1.214324339,0.225548117,neg,ns,-0.001467427,0.001025935,-1.43033048,0.15362933,neg,ns,0.813525863,0.00000972,0.0000353,0.275507531,0.783109892,pos,ns,0.938521189,Klf3,Klf3_threeUTR,5,64827128,64827177,64827128,64827129,50,+,CGTGCAGCCTGGGAAGAGACCTTTACCTGTGGAATCCCCGGATACTCAAA,3' UTR,5,64803388,64832901,29514,1,Klf3-201,23740,Klf3-201;Klf3-208;Klf3-209;Klf3-202;Klf3-205;Klf3-203;Klf3-207;Klf3-206,Klf3;Klf3;Klf3;Klf3;Klf3;Klf3;Klf3;Klf3,0;0;0;0;14744;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,4,16599,ENSMUSG00000029178,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
961,cg00179574,-0.000000396,0.00000146,-0.272023922,0.785784707,loss,ns,0.000003,0.00000247,1.214190147,0.225599271,pos,ns,0.002272806,0.000724544,3.136879684,0.001871484,pos,ns,2.727813861,-0.0000478,0.0000249,-1.918270744,0.055995046,neg,ns,0.96425323,Rock1,Rock1_threeUTR,18,10065786,10065835,10065834,10065835,50,+,ACTTGCATTACATAGTAATAATTAATCTAATCTACCTGTAGGCAAACCCG,3' UTR,18,10064401,10182045,117645,2,Rock1-201,116210,Rock1-201;Rock1-207;Rock1-204;Rock1-203,Rock1;Rock1;Rock1;Rock1,0;0;0;6308,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,3,19877,ENSMUSG00000024290,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3492,cg13918864,-0.00000597,0.00000501,-1.191926626,0.234201673,loss,ns,-0.0000103,0.00000851,-1.214113654,0.225628434,neg,ns,-0.004157979,0.002492269,-1.668350823,0.096255774,neg,ns,1.01657321,0.0000574,0.0000857,0.670025725,0.503340179,pos,ns,0.888566037,Bcl11a,Bcl11a_Exon,11,24164904,24164953,24164952,24164953,50,+,AAGTCTTCAAGAACTGTAGCAATCTCACTGTCCACAGGAGAAGCCACACG,"Exon (Bcl11a-202/Bcl11a, exon 4 of 4)",11,24078056,24173194,95139,1,Bcl11a-201,86848,Bcl11a-201;Bcl11a-203;Bcl11a-202;Bcl11a-204;Bcl11a-206,Bcl11a;Bcl11a;Bcl11a;Bcl11a;Bcl11a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,51,98,14025,ENSMUSG00000000861,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6504,cg21556633,-0.0000195,0.0000057,-3.411939181,0.000730613,loss,ns,0.0000118,0.00000969,1.214038056,0.225657258,pos,ns,-0.00413173,0.002837542,-1.456094572,0.146378488,neg,ns,0.834522743,0.000129461,0.0000976,1.32667943,0.185591191,pos,ns,0.141034377,Zfp536,Zfp536_Intron,7,37563452,37563501,37563452,37563453,50,-,CGAGCTCCGGTATAAAGTTTGGCTTTTGCAGCAGGAAGCAGCTGGGCCAA,"Intron (Zfp536-211/Zfp536, intron 1 of 3)",7,37318024,37568390,250367,2,Zfp536-211,4889,Zfp536-211;Zfp536-202;Zfp536-201;Zfp536-203;Zfp536-206,Zfp536;Zfp536;Zfp536;Zfp536;Zfp536,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,73,112,243937,ENSMUSG00000043456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
18333,cg17282895,-0.000000621,0.00000084,-0.739656837,0.460067987,loss,ns,0.00000173,0.00000143,1.21394627,0.225692258,pos,ns,0.000440047,0.000418071,1.05256729,0.293359101,pos,ns,0.532600434,-0.0000179,0.0000144,-1.246135511,0.213655534,neg,ns,0.983042268,Tbca,Tbca_Intron,13,94817263,94817312,94817263,94817264,50,+,CGACAACCCAGCAACTGCAGTCGGAAAAGACTATTAGCGAGAATCATTAT,"Intron (Tbca-201/Tbca, intron 1 of 3)",13,94788910,94842922,54013,1,Tbca-201,28353,Tbca-201;Tbca-203;Tbca-204,Tbca;Tbca;Tbca,0;0;-422,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,9,21371,ENSMUSG00000042043,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18484,cg01151827,-0.00000475,0.00000155,-3.069509107,0.002333678,loss,ns,-0.00000319,0.00000263,-1.213844615,0.225731026,neg,ns,-0.001014541,0.000769949,-1.317673131,0.188586052,neg,ns,0.724490432,-0.0000103,0.0000265,-0.390780194,0.696228134,neg,ns,0.969506682,Gm5881,Gm5881_Intergenic_downstream,6,96000293,96000342,96000341,96000342,50,-,CTTCCCTGTTTCTCTTTTTTCTCACTTCAATAATTTTCAGTTACATTACG,Distal Intergenic,6,96033003,96033369,367,2,Gm5881-201,33076,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,545867,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13472,cg22351612,-0.000000624,0.00000162,-0.385588041,0.70006625,loss,ns,-0.00000334,0.00000275,-1.21383753,0.225733728,neg,ns,-0.000716042,0.000805028,-0.889462496,0.374444271,neg,ns,0.42661281,0.00000278,0.0000277,0.100496416,0.92001519,pos,ns,0.95561855,Xpo7,Xpo7_Intron,14,70684701,70684750,70684749,70684750,50,+,ATATCTCTAAGCACAGCTTGTCACACACTCAAATGCACAATTTTCTGACG,"Intron (Xpo7-202/Xpo7, intron 15 of 27)",14,70654246,70766628,112383,2,Xpo7-202,81878,Xpo7-202;Xpo7-201;Xpo7-206;Xpo7-203;Xpo7-204;Xpo7-205,Xpo7;Xpo7;Xpo7;Xpo7;Xpo7;Xpo7,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,13,65246,ENSMUSG00000022100,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17920,cg15780307,0.00000222,0.00000143,1.557021538,0.120485657,gain,ns,0.00000295,0.00000243,1.213829513,0.225736785,pos,ns,0.002587539,0.000711146,3.63854924,0.000321065,pos,ns,3.493407533,-0.0000806,0.0000245,-3.294761158,0.001099185,neg,ns,0.960197832,Zfyve16,Zfyve16_Exon,13,92521144,92521193,92521144,92521145,50,-,CGTTTGGTAAAAGTAAATTTGACTTGGCAGTTCATACAGTTTGGAGCTTC,"Exon (Zfyve16-201/Zfyve16, exon 3 of 18)",13,92487108,92530868,43761,2,Zfyve16-201,9675,Zfyve16-201;Zfyve16-204;Zfyve16-203,Zfyve16;Zfyve16;Zfyve16,0;-4070;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,218441,ENSMUSG00000021706,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21903,cg27201382,0.000171314,0.00000676,25.34163993,1.58E-77,gain,yes,-0.0000139,0.0000115,-1.21382808,0.225737332,neg,ns,0.010515849,0.003364619,3.125420426,0.001943602,pos,ns,2.71139266,0.000107703,0.000115709,0.930806451,0.352677983,pos,ns,0.199702471,Bdnf,Bdnf_fiveUTR,2,109676257,109676306,109676257,109676258,50,-,CGCTGAAGTTGGCTTCCTAGCGGTGTAGGCTGGAATAGACTCTTGGCAAG,5' UTR,2,109674700,109727007,52308,1,Bdnf-201,1557,Bdnf-201;Bdnf-207;Bdnf-208;Bdnf-210;Bdnf-206,Bdnf;Bdnf;Bdnf;Bdnf;Bdnf,0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,8,18,12064,ENSMUSG00000048482,conserved gene and region,2,109676012,109676311,300,*,300,19,0.566666667,0.795978215,0.063333333,4.10E-11,CpGisland,TRUE,U13,Hc-P
11325,cg15298624,-0.00000965,0.00000544,-1.774584981,0.076947778,loss,ns,-0.0000112,0.00000923,-1.213748672,0.22576762,neg,ns,-0.00274553,0.002705398,-1.014834079,0.310976322,neg,ns,0.507272677,-0.00000296,0.000093,-0.03185773,0.974606009,neg,ns,0.889732205,Gm13532,Gm13532_Intergenic_downstream,2,57617355,57617404,57617355,57617356,50,-,CGAGATGGCTGCTCATAATGGCAAATGAAATATGCTGGTATGATAGGTAC,Distal Intergenic,2,57628989,57629228,240,2,Gm13532-201,11873,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,6,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7657,cg17119557,-0.00000486,0.00000292,-1.660410341,0.097843024,loss,ns,0.00000603,0.00000497,1.213633208,0.225811665,pos,ns,0.002641045,0.001455731,1.814239817,0.070607399,pos,ns,1.151149784,-0.0000762,0.0000501,-1.522521848,0.128897771,neg,ns,0.928121462,Zbtb20,Zbtb20_Intron,16,43581915,43581964,43581915,43581916,50,-,CGGACTTCCGTGCCAGTCACATTTAAACCATAATGTTGTAATTTTTGGCA,"Intron (Zbtb20-204/Zbtb20, intron 13 of 14)",16,42907652,43642602,734951,1,Zbtb20-204,674263,Zbtb20-217;Zbtb20-204;Zbtb20-215;Zbtb20-201;Zbtb20-203;Zbtb20-213;Zbtb20-219;Zbtb20-216;Zbtb20-208;Zbtb20-220;Zbtb20-206;Zbtb20-202;Zbtb20-205,Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,98,56490,ENSMUSG00000022708,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25664,cg24824483,-0.0000183,0.00000497,-3.682497641,0.000272399,loss,ns,0.0000103,0.00000845,1.213610208,0.225820439,pos,ns,0.013011061,0.002475549,5.255827431,0.000000275,pos,ns,6.560984806,-0.000382178,0.0000851,-4.489137981,0.0000101,neg,ns,0.834107672,Eif4g3,Eif4g3_Exon,4,138103318,138103367,138103318,138103319,50,-,CGCCTTTTTACCCAAGTCAGCCGGTGTATCAGTCAGCACCTATCATAGTG,"Exon (Eif4g3-210/Eif4g3, exon 9 of 10)",4,137993022,138105419,112398,1,Eif4g3-210,110296,Eif4g3-210;Eif4g3-201;Eif4g3-204;Eif4g3-203;Eif4g3-202;Eif4g3-205;Eif4g3-215;Eif4g3-214,Eif4g3;Eif4g3;Eif4g3;Eif4g3;Eif4g3;Eif4g3;Eif4g3;Eif4g3,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,10,230861,ENSMUSG00000028760,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18422,cg14508198,0.0000704,0.000016,4.406304769,0.0000145,gain,ns,-0.0000329,0.0000271,-1.213469343,0.225874183,neg,ns,0.016148331,0.007953726,2.030285036,0.043181043,pos,ns,1.364706877,-0.000432624,0.000273528,-1.581643917,0.114750579,neg,ns,0.367802565,U2surp,U2surp_threeUTR,9,95477470,95477519,95477518,95477519,50,-,TCTGGATAAATTGCCCAATCTTCCCATGCTCTGAAGCAAGTCATTACCCG,3' UTR,9,95456898,95511894,54997,2,U2surp-202,34375,U2surp-202;U2surp-201;U2surp-208;U2surp-209;U2surp-205,U2surp;U2surp;U2surp;U2surp;U2surp,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,6,67958,ENSMUSG00000032407,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23837,cg25275715,0.00000209,0.00000105,1.999188984,0.04646054,gain,ns,-0.00000216,0.00000178,-1.213338318,0.225924182,neg,ns,0.0000743,0.000521068,0.142605224,0.886694612,pos,ns,0.05222593,0.00000298,0.0000179,0.166484031,0.867884583,pos,ns,0.024608409,En1,En1_Promoter,1,120600094,120600143,120600094,120600095,50,+,CGTTAAGCCGTCAATAAAGTCATTTCTGTAAATGGTGTCTCCAAAGGGCC,Promoter (2-3kb),1,120602418,120607992,5575,1,En1-201,-2275,En1-201,En1,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,23,36,13798,ENSMUSG00000058665,conserved gene and region,1,120599977,120600103,127,*,127,10,0.503937008,1.241446725,0.078740158,0.000000615,CpGisland,TRUE,U13,Hc-P
17686,cg07195259,0.0000448,0.000005,8.965497929,2.98E-17,gain,yes,-0.0000103,0.00000849,-1.213283995,0.225944913,neg,ns,0.008353486,0.002487721,3.357886687,0.000883343,pos,ns,3.053870548,-0.000210343,0.0000856,-2.458640294,0.014492834,neg,ns,0.106525954,Zic4,Zic4_threeUTR,9,91386629,91386678,91386629,91386630,50,-,CGCCACGGTGCATCTTCATGGTAAGTTAGGATTTCTATGGCAATGTGCAA,3' UTR,9,91368970,91387793,18824,1,Zic4-204,17659,Zic4-204;Zic4-209;Zic4-205;Zic4-201;Zic4-202,Zic4;Zic4;Zic4;Zic4;Zic4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,18,55,22774,ENSMUSG00000036972,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
25954,cg10899907,-0.00000179,0.00000265,-0.674683327,0.500379827,loss,ns,0.00000546,0.0000045,1.213113652,0.226009931,pos,ns,0.003317234,0.001319364,2.514267266,0.012434204,pos,ns,1.905382015,-0.0000644,0.0000454,-1.41889918,0.156933033,neg,ns,0.095153429,Spen,Spen_Exon,4,141538146,141538195,141538194,141538195,50,-,GGGCCTCGTGTCACTCACCGTTTGAAATGCTCGATGATCTTCTCTTCCCG,Promoter (<=1kb),4,141467890,141538449,70560,2,Spen-201,254,Spen-201;Spen-202;Spen-205,Spen;Spen;Spen,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,17,19,56381,ENSMUSG00000040761,conserved gene and region,4,141537680,141538903,1224,*,1224,186,0.762254902,1.046413502,0.151960784,1.93E-179,CpGisland,TRUE,U1,Pr-A
27682,cg15042650,0.00000413,0.00000279,1.478362774,0.140326022,gain,ns,0.00000575,0.00000474,1.213020304,0.226045567,pos,ns,0.003423879,0.001389841,2.463504813,0.014301461,pos,ns,1.844619579,-0.0000652,0.0000478,-1.363977114,0.173564273,neg,ns,0.951867427,Akt3,Akt3_Intron,1,177067514,177067563,177067514,177067515,50,-,CGAGCTGTTAAATCAGCGTTTTAATCAATATACCAATCTTGTTTAAGGCA,"Intron (Akt3-201/Akt3, intron 7 of 12)",1,177020073,177248805,228733,2,Akt3-201,181242,Akt3-201;Akt3-203;Akt3-202,Akt3;Akt3;Akt3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,14,23797,ENSMUSG00000019699,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1760,cg00742557,0.0000025,0.00000291,0.860188984,0.390349624,gain,ns,0.000006,0.00000495,1.212910793,0.226087378,pos,ns,0.003442708,0.001449328,2.375381727,0.018138687,pos,ns,1.741394149,-0.0000475,0.0000498,-0.952376993,0.341647794,neg,ns,0.037780502,Kctd1,Kctd1_Intron,18,15063639,15063688,15063687,15063688,50,-,TTAATGACCTTCAGCTACCGGGAGGCAAAGCCGGGCTCTTAAAGGAGCCG,"Intron (Kctd1-201/Kctd1, intron 1 of 4)",18,14968685,15151446,182762,2,Kctd1-201,87758,Kctd1-201;Kctd1-202;Kctd1-206;Kctd1-205,Kctd1;Kctd1;Kctd1;Kctd1,0;0;0;-1750,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,24,106931,ENSMUSG00000036225,conserved gene and region,18,15063315,15063752,438,*,438,43,0.673515982,0.892352885,0.098173516,1.42E-32,CpGisland,TRUE,U3,Pr-B
4907,cg15571405,0.0000153,0.00000302,5.058506009,0.000000725,gain,yes,-0.00000622,0.00000513,-1.212888618,0.226095845,neg,ns,0.003699694,0.001503318,2.46101885,0.014398979,pos,ns,1.841668309,-0.000147513,0.0000517,-2.853309943,0.004617722,neg,ns,0.035208031,Gm13835,Gm13835_Intron,6,31221702,31221751,31221750,31221751,50,+,TGCCTCACACCCACATATCTTGTTTTCCTAATTTGATTTCTGTATTTGCG,"Intron (2210408F21Rik-208/2210408F21Rik-208, intron 1 of 5)",6,31141979,31142663,685,2,Gm13835-201,-79039,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,4,100038973,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5173,cg04706544,0.00000479,0.00000568,0.842791613,0.399994775,gain,ns,0.0000117,0.00000965,1.212832242,0.226117371,pos,ns,0.005314801,0.002826359,1.880440504,0.060985459,pos,ns,1.214773706,-0.000194338,0.0000972,-1.999398749,0.046437731,neg,ns,0.136356916,Prrxl1,Prrxl1_Promoter,14,32598755,32598804,32598755,32598756,50,-,CGGTACTTTAGAGTTTAATTTTCACCCAGGCAGAGAGAAGGGCGGTCTCT,Promoter (<=1kb),14,32599407,32649204,49798,1,Prrxl1-203,-652,Prrxl1-203;Prrxl1-204;Prrxl1-202;Prrxl1-201;Prrxl1-205,Prrxl1;Prrxl1;Prrxl1;Prrxl1;Prrxl1,0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,14,23,107751,ENSMUSG00000041730,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
13073,cg25963903,0.000000162,0.00000118,0.137161053,0.890992534,gain,ns,0.00000244,0.00000201,1.212740431,0.226152433,pos,ns,0.001917077,0.000588343,3.258431386,0.001244673,pos,ns,2.904944584,-0.0000188,0.0000202,-0.928315818,0.353966003,neg,ns,0.03546641,Chd3,Chd3_Intron,11,69366780,69366829,69366828,69366829,50,+,GTGGGTTTGTATTTTCAGACCTTTTGCAAAGAAACTACCAGAATTTTCCG,"Intron (Chd3-202/Chd3, intron 1 of 39)",11,69343273,69369406,26134,2,Chd3-202,2577,Chd3-202;Chd3-201;Chd3-204,Chd3;Chd3;Chd3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,26,216848,ENSMUSG00000018474,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20893,cg20005616,-0.0000167,0.00000669,-2.504118938,0.012789145,loss,ns,0.0000138,0.0000114,1.21260649,0.226203589,pos,ns,-0.001466551,0.003327955,-0.440676175,0.659754588,neg,ns,0.180617581,-0.0000125,0.000114448,-0.109600709,0.912796962,neg,ns,0.105645329,Atg2b,Atg2b_Exon,12,105684701,105684750,105684701,105684702,50,-,CGGTGCCTTGGTACAGGTCCAGGCTGAGCTGCTCCAGGCTCAGCTTCTCC,Promoter (<=1kb),12,105616136,105685211,69076,2,Atg2b-201,461,Atg2b-201;Atg2b-204;Gskip-202;Gskip-201;Gskip-203,Atg2b;Atg2b;Gskip;Gskip;Gskip,0;0;-79;-634;-651,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,76559,ENSMUSG00000041341,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
15203,cg00928732,0.0000309,0.00000447,6.915336004,2.67E-11,gain,yes,0.00000922,0.0000076,1.212425693,0.226272654,pos,ns,0.003771822,0.002227224,1.693508092,0.091363301,pos,ns,1.039228219,0.0000473,0.0000766,0.617285883,0.537499309,pos,ns,0.0832935,Rhcg,Rhcg_Exon,7,79592407,79592456,79592407,79592408,50,+,CGGTGAAGCAAACTGTCCAATTAGAGCCAGGGTCTCCGGCTTCCATCTTT,"Exon (Gm45169-201/Gm45169-201, exon 1 of 2)",7,79593369,79594929,1561,2,Rhcg-203,2473,Rhcg-201;Rhcg-203,Rhcg;Rhcg,25201;2473,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,9,56315,ENSMUSG00000030549,conserved gene but different region,7,79592197,79592463,267,*,267,21,0.685393258,0.717007673,0.078651685,4.16E-14,CpGisland,TRUE,U3,Pr-B
20100,cg08052843,0.0000674,0.0000074,9.108128847,1.06E-17,gain,yes,-0.0000152,0.0000126,-1.212326039,0.226310729,neg,ns,0.002732487,0.003683741,0.741769541,0.458788574,pos,ns,0.338387407,-0.0000896,0.000126684,-0.706983781,0.480107643,neg,ns,0.487658661,Gm11627,Gm11627_Promoter,11,102579610,102579659,102579610,102579611,50,+,CGGGTAAGGCCAGGCCAGCCCGCTCTTCTCATGTAAAGCAGCTTTTTGTC,Promoter (<=1kb),11,102576398,102579461,3064,2,Gm11627-202,-149,Gm11627-202;Gm11627-203;Gm11627-201,Gm11627;Gm11627;Gm11627,-149;-335;-491,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,1,100040792,ENSMUSG00000078640,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
13573,cg25429952,-0.0000156,0.00000605,-2.583400407,0.010240879,loss,ns,0.0000125,0.0000103,1.212238574,0.22634415,pos,ns,0.00654908,0.003013109,2.17352949,0.030497136,pos,ns,1.515740938,-0.000351585,0.000103621,-3.393001524,0.000781073,neg,ns,0.846225951,Nlrp1c-ps,Nlrp1c-ps_Intergenic_upstream,11,71409508,71409557,71409556,71409557,50,+,TCATGTCTTTTTACCATGATATTTACTCAAAAAAGTATGACTAACCATCG,Distal Intergenic,11,71242430,71285232,42803,2,Nlrp1c-ps-201,-124276,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,627984,ENSMUSG00000092528,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14942,cg20353404,0.0000353,0.00000514,6.869957642,3.53E-11,gain,yes,-0.0000106,0.00000873,-1.212224779,0.226349422,neg,ns,0.004991048,0.002557956,1.951186198,0.051935432,pos,ns,1.284536249,-0.000130607,0.000088,-1.484713218,0.138635917,neg,ns,0.13016198,Pax3,Pax3_Exon,1,78193810,78193859,78193858,78193859,50,-,GCCCGGGTTCTCTCTTTTGTATTCCTCAATTTTCTTCTCCACGTCAGGCG,"Exon (Pax3-201/Pax3, exon 3 of 9)",1,78101267,78196838,95572,2,Pax3-201,2979,Pax3-201;Pax3-202;Pax3-203,Pax3;Pax3;Pax3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,17,18505,ENSMUSG00000004872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
1967,cg16314035,-0.00000157,0.00000069,-2.280650233,0.023247574,loss,ns,0.00000142,0.00000117,1.212037524,0.226420987,pos,ns,0.000360146,0.000343538,1.048343524,0.295296999,pos,ns,0.529740966,-0.0000133,0.0000118,-1.12920163,0.259685823,neg,ns,0.982644462,Rarb,Rarb_Intron,14,16704937,16704986,16704985,16704986,50,+,CCATCCATTTTAGTACAATGATCCTTATGTTCAATAAAATTGAAGTGTCG,"Intron (Rarb-203/Rarb, intron 1 of 3)",14,16509065,16819156,310092,2,Rarb-203,114170,Rarb-203;Rarb-204,Rarb;Rarb,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,16,218772,ENSMUSG00000017491,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9501,cg24157652,-0.0000016,0.00000149,-1.070926024,0.285035758,loss,ns,0.00000307,0.00000254,1.211965625,0.22644847,pos,ns,0.000677218,0.000743095,0.911347439,0.362820455,pos,ns,0.440308236,-0.0000244,0.0000256,-0.956514675,0.339557604,neg,ns,0.075089059,Mbd5,Mbd5_fiveUTR,2,48950181,48950230,48950229,48950230,50,+,TGTGTCTGTGGGGGCTTCATTGCCTTCCTCTGGCTCTGACTTTCACTCCG,Promoter (<=1kb),2,48949508,49260558,311051,1,Mbd5-202,673,Mbd5-202;Mbd5-211;Mbd5-203;Mbd5-207;Mbd5-210;Mbd5-205;Mbd5-209;Mbd5-208;Orc4-201;Orc4-212;Orc4-207;Orc4-208;Orc4-202;Orc4-205;Orc4-209;Orc4-203,Mbd5;Mbd5;Mbd5;Mbd5;Mbd5;Mbd5;Mbd5;Mbd5;Orc4;Orc4;Orc4;Orc4;Orc4;Orc4;Orc4;Orc4,0;0;0;0;0;0;0;0;-905;-950;-947;-142;-947;-949;-940;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,10,109241,ENSMUSG00000036792,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
7364,cg20215852,0.0000419,0.00000924,4.530083122,0.00000842,gain,ns,-0.000019,0.0000157,-1.211965085,0.226448676,neg,ns,0.005056434,0.004598085,1.099682589,0.27232369,pos,ns,0.564914577,-0.0000769,0.000158128,-0.48601845,0.627297451,neg,ns,0.203741447,Pou4f3,Pou4f3_fiveUTR,18,42395116,42395165,42395164,42395165,50,-,GCAGGGTAATATATTTGGAAGCTTTGATGAGAGCCTGCTGGCACGCGCCG,Promoter (<=1kb),18,42394539,42397249,2711,1,Pou4f3-201,577,Pou4f3-201;Pou4f3-202,Pou4f3;Pou4f3,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,7,17,18998,ENSMUSG00000024497,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
12617,cg19520772,-0.000000217,0.00000198,-0.109472529,0.91289854,loss,ns,-0.00000409,0.00000337,-1.211908632,0.226470257,neg,ns,-0.000972261,0.000987922,-0.984147894,0.325810269,neg,ns,0.487035231,0.0000561,0.000034,1.651581769,0.099632397,pos,ns,0.938217072,Ccnl1,Ccnl1_threeUTR,3,65946604,65946653,65946604,65946605,50,+,CGCCTGTGCCTGCCATGTCCTGAGCGACTGCCACCATGGTGCTTGCTTTT,3' UTR,3,65946151,65958162,12012,2,Ccnl1-203,11509,Ccnl1-203;Ccnl1-214;Ccnl1-202;Ccnl1-201;Ccnl1-205;Ccnl1-206;Ccnl1-212;Ccnl1-207;Ccnl1-213;Ccnl1-211;Ccnl1-208;Ccnl1-204;Ccnl1-209;Ccnl1-210,Ccnl1;Ccnl1;Ccnl1;Ccnl1;Ccnl1;Ccnl1;Ccnl1;Ccnl1;Ccnl1;Ccnl1;Ccnl1;Ccnl1;Ccnl1;Ccnl1,0;0;0;0;0;0;0;0;0;0;0;5215;6340;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,7,7,56706,ENSMUSG00000027829,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16640,cg14890201,0.0000246,0.0000158,1.552560309,0.121548498,gain,ns,-0.0000326,0.0000269,-1.211881209,0.22648074,neg,ns,0.014401317,0.007883608,1.826741756,0.068700105,pos,ns,1.1630426,-0.000561571,0.000271117,-2.071326968,0.039155278,neg,ns,0.395928911,Bcas3,Bcas3_Intron,11,85775742,85775791,85775742,85775743,50,+,CGGATTGATGATCTGTAAAGTGGATTTGTTATTTGGCTGTTTGCTTTGGC,"Intron (Bcas3-205/Bcas3, intron 24 of 27)",11,85353167,85826058,472892,1,Bcas3-205,422575,Bcas3-205;Bcas3-206;Bcas3-201;Bcas3-202;Bcas3-216;Bcas3-212;Bcas3-203;Bcas3-207,Bcas3;Bcas3;Bcas3;Bcas3;Bcas3;Bcas3;Bcas3;Bcas3,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,24,192197,ENSMUSG00000059439,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
26842,cg13772936,-0.00000179,0.00000125,-1.435724867,0.152088898,loss,ns,0.00000256,0.00000212,1.211806442,0.226509325,pos,ns,0.000452177,0.000619751,0.729610196,0.466179414,pos,ns,0.331446908,0.00000338,0.0000213,0.158694076,0.874013237,pos,ns,0.044034174,Lamc1,Lamc1_Exon,1,153332194,153332243,153332242,153332243,50,-,ACCAGGTGGTGTCGGCCTGGTTGTTGTAGTCGGTCAGGAAGGCTGCCCCG,Promoter (<=1kb),1,153218922,153332786,113865,2,Lamc1-201,543,Lamc1-201,Lamc1,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,6,226519,ENSMUSG00000026478,conserved gene and region,1,153332004,153333079,1076,*,1076,114,0.720260223,0.822001528,0.105947955,2.02E-89,CpGisland,TRUE,U1,Pr-A
13293,cg23640730,0.00000609,0.00000179,3.407432882,0.000742336,gain,ns,-0.00000368,0.00000303,-1.211770438,0.226523091,neg,ns,0.001683035,0.000888851,1.893496254,0.059222911,pos,ns,1.227510252,-0.0000533,0.0000306,-1.744356375,0.082088075,neg,ns,0.013137102,Dlg4,Dlg4_fiveUTR,11,70018895,70018944,70018895,70018896,50,+,CGCCGCCGCGGCCAGGCCCCCCAACATGGACTGTCTCTGTATAGTGACAA,5' UTR,11,70016942,70044954,28013,1,Dlg4-217,1953,Acadvl-202;Acadvl-201;Acadvl-207;Acadvl-204;Acadvl-205;Dlg4-217;Dlg4-205;Dlg4-204;Dlg4-209;Dlg4-202;Dlg4-215;Dlg4-203;Dlg4-219;Dlg4-210;Dlg4-214;Dlg4-206,Acadvl;Acadvl;Acadvl;Acadvl;Acadvl;Dlg4;Dlg4;Dlg4;Dlg4;Dlg4;Dlg4;Dlg4;Dlg4;Dlg4;Dlg4;Dlg4,0;0;-3518;-3484;-3496;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,4,13385,ENSMUSG00000020886,conserved gene and region,11,70018895,70018904,10,*,10,4,1,1.666666667,0.4,0.00000556,CpGisland,TRUE,U4,Pr-F
18163,cg03647858,-0.00000258,0.00000118,-2.190259415,0.029250081,loss,ns,-0.00000242,0.000002,-1.211697119,0.226551126,neg,ns,-0.001235461,0.000585612,-2.10969168,0.035686201,neg,ns,1.447499683,0.0000198,0.0000201,0.982469972,0.326634508,pos,ns,0.04398617,Ttc17,Ttc17_Intergenic_downstream,2,94265360,94265409,94265408,94265409,50,+,ACGCCCAGTTCCAGCAGTGTGTGCTATTGACCTGCATTGACGTCAGTGCG,Distal Intergenic,2,94355049,94362817,7769,2,Ttc17-205,97408,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,5,74569,ENSMUSG00000027194,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4287,cg18293466,0.0000292,0.00000466,6.264528333,1.25E-09,gain,yes,-0.0000096,0.00000792,-1.211575739,0.226597543,neg,ns,-0.001533851,0.002321221,-0.660794824,0.509234656,neg,ns,0.293082048,0.0000432,0.0000798,0.541027411,0.588877244,pos,ns,0.897364599,Dyrk1b,Dyrk1b_Exon,7,28185815,28185864,28185815,28185816,50,-,CGACTACCTCCGCTTCCAGGACCTGGTGCTGCGCATGCTGGAGTATGAGC,"Exon (Dyrk1b-201/Dyrk1b, exon 9 of 11)",7,28179469,28187294,7826,1,Dyrk1b-201,6346,Dyrk1b-201;Dyrk1b-203;Dyrk1b-202,Dyrk1b;Dyrk1b;Dyrk1b,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,8,13549,ENSMUSG00000002409,conserved gene and region,7,28185735,28186008,274,*,274,29,0.748175183,0.761548783,0.105839416,3.86E-23,CpGisland,TRUE,U10,Tr-S
15067,cg27229551,-0.000016,0.00000633,-2.530415195,0.011887477,loss,ns,0.000013,0.0000108,1.211418963,0.226657506,pos,ns,0.003649018,0.003151253,1.157957566,0.2477727,pos,ns,0.605946547,-0.0000291,0.000108371,-0.268680488,0.788354285,neg,ns,0.873387159,Ccnq,Ccnq_Promoter,11,78758545,78758594,78758545,78758546,50,+,CGTCCTAAAGATAAGCTTGATCAGATATGAGCATTGCTGAGATTGATTTG,Promoter (6-7kb),11,78750506,78751729,1224,2,Ccnq-201,-6816,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,1,69109,ENSMUSG00000049489,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9669,cg27510260,-0.00000243,0.00000531,-0.457854426,0.647377782,loss,ns,-0.0000109,0.00000902,-1.2112691,0.226714835,neg,ns,-0.005044705,0.002641874,-1.909517407,0.057118281,neg,ns,1.243224871,0.0000402,0.0000909,0.4422466,0.658619147,pos,ns,0.774859251,Lypd6b,Lypd6b_Intron,2,49856336,49856385,49856336,49856337,50,+,CGTAGGCACCAGCAGCAAGAGCTTTGATTTCATTTTAAAAGGAGTTAGAA,"Intron (Lypd6b-201/Lypd6b, intron 1 of 9)",2,49787688,49948849,161162,1,Lypd6b-201,68648,Lypd6b-201;Lypd6b-203;Lypd6b-202,Lypd6b;Lypd6b;Lypd6b,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,71897,ENSMUSG00000026765,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16375,cg25556035,-0.0000647,0.0000123,-5.25357751,0.000000278,loss,yes,-0.0000254,0.0000209,-1.211169998,0.226752752,neg,ns,0.003665381,0.006133944,0.597556955,0.550571833,pos,ns,0.259186011,0.0000939,0.000210946,0.445170942,0.656506913,pos,ns,0.810531808,Nfix,Nfix_Intron,8,84780098,84780147,84780098,84780099,50,-,CGTCCTAACGAACTTGAGTTAATTAATGCTAAGGAAGAAAAGAGGCGCCC,"Intron (Nfix-201/Nfix, intron 1 of 8)",8,84708614,84800140,91527,2,Nfix-201,19993,Nfix-201;Nfix-202;Nfix-205,Nfix;Nfix;Nfix,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,49,18032,ENSMUSG00000001911,conserved gene and region,8,84779926,84780165,240,*,240,13,0.554166667,0.771895101,0.054166667,0.000000544,CpGisland,TRUE,U13,Hc-P
8999,cg19272508,-0.000000629,0.00000034,-1.85014211,0.065244502,loss,ns,0.000000699,0.000000577,1.211133316,0.226766788,pos,ns,0.000377245,0.000169126,2.230559563,0.02642569,pos,ns,1.577973658,-0.0000159,0.00000582,-2.727487798,0.00674553,neg,ns,0.008502051,Trim8,Trim8_Exon,19,46502797,46502846,46502797,46502798,50,-,CGTGCAGACGCACCTGCAGCAGCCCTCCACCGCCCGCGGGCACCTCCTGG,"Exon (Trim8-201/Trim8, exon 1 of 6)",19,46501702,46516848,15147,1,Trim8-201,1095,Trim8-201,Trim8,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,15,21,93679,ENSMUSG00000025034,conserved gene and region,19,46502503,46503142,640,*,640,53,0.6359375,0.821705426,0.0828125,6.38E-36,CpGisland,TRUE,U1,Pr-A
23309,cg18937733,0.00000202,0.00000439,0.460972865,0.64514131,gain,ns,-0.00000903,0.00000746,-1.211092826,0.226782281,neg,ns,-0.005119337,0.002184651,-2.343319856,0.019744753,neg,ns,1.704548294,0.0000329,0.0000751,0.437952227,0.661725911,pos,ns,0.828714463,Eri3,Eri3_Intron,4,117671950,117671999,117671950,117671951,50,-,CGCTGGGTAATTGCAGATAACGAGGGGACTTATTCTTAATATGCACAGCG,"Intron (Eri3-201/Eri3, intron 8 of 8)",4,117550365,117674297,123933,1,Eri3-201,121585,Dmap1-206;Dmap1-201;Dmap1-204;Eri3-201;Eri3-206;Eri3-203,Dmap1;Dmap1;Dmap1;Eri3;Eri3;Eri3,10254;10274;9984;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,82,97,140546,ENSMUSG00000033423,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7089,cg27005625,-0.00000244,0.00000369,-0.66001687,0.50973308,loss,ns,-0.0000076,0.00000628,-1.210958393,0.226833728,neg,ns,0.001247688,0.001838947,0.678479583,0.497973824,pos,ns,0.302793485,-0.0000833,0.0000632,-1.317198078,0.18874501,neg,ns,0.923948914,Slc7a2,Slc7a2_Exon,8,40908103,40908152,40908103,40908104,50,-,CGGAGGATGGGTTGCTTTTCAAATGTCTAGCTCAAATCAATTCCAAAACG,"Exon (Slc7a2-202/Slc7a2, exon 7 of 12)",8,40862396,40918056,55661,1,Slc7a2-202,45707,Slc7a2-202;Slc7a2-201;Slc7a2-203;Slc7a2-204,Slc7a2;Slc7a2;Slc7a2;Slc7a2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,11988,ENSMUSG00000031596,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12990,cg04586036,0.00000494,0.00000694,0.711725817,0.477169819,gain,ns,-0.0000143,0.0000118,-1.210833224,0.226881637,neg,ns,-0.006308535,0.003455845,-1.825468508,0.068892385,neg,ns,1.161828781,0.0000775,0.000118846,0.652503587,0.514559911,pos,ns,0.787924658,Gm5342,Gm5342_Intergenic_upstream,7,69062271,69062320,69062319,69062320,50,+,GCTCGTCTGACACATCTGGGCACAGAAAGTAATTGAAACAGCTGCTTCCG,Distal Intergenic,7,69209884,69210886,1003,1,Gm5342-201,-147564,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,7,384741,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26572,cg11286786,0.0000943,0.0000132,7.163277186,5.77E-12,gain,yes,-0.0000271,0.0000224,-1.210824986,0.22688479,neg,ns,0.009147285,0.006554218,1.395633256,0.163823787,pos,ns,0.785623039,-0.0002352,0.000225399,-1.043484384,0.297537048,neg,ns,0.579364686,Casz1,Casz1_Intron,4,148922172,148922221,148922172,148922173,50,+,CGGCCCCAGAAAGTGCAGATTCAGGTTTTAATACACAAAATTATTTCAGG,"Intron (Casz1-201/Casz1, intron 4 of 15)",4,148804429,148945129,140701,1,Casz1-201,117743,Casz1-201;Casz1-202;Casz1-206,Casz1;Casz1;Casz1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,94,124,69743,ENSMUSG00000028977,mapped to different genes,4,148922073,148922173,101,*,101,10,0.673267327,0.956439394,0.099009901,6.91E-08,CpGisland,TRUE,NA,NRS
7881,cg08557359,-0.00000653,0.00000405,-1.613405487,0.10767389,loss,ns,-0.00000833,0.00000688,-1.210815729,0.226888334,neg,ns,-0.0062871,0.002015788,-3.118928731,0.001985586,neg,ns,2.702111281,0.000149043,0.0000693,2.149980114,0.032330127,pos,ns,0.923940663,Runx2,Runx2_Exon,17,44607937,44607986,44607985,44607986,50,-,TGCCACTAGAATTCAAAACAGTTGGGGAACTGCTGTGGCTTCCATCAGCG,"Exon (Runx2-203/Runx2, exon 7 of 7)",17,44495987,44736176,240190,2,Runx2-212,128190,Runx2-212;Runx2-214;Runx2-203;Runx2-202;Runx2-213;Runx2-204;Runx2-210;Runx2-211;Runx2-207;Runx2-201;Runx2-209,Runx2;Runx2;Runx2;Runx2;Runx2;Runx2;Runx2;Runx2;Runx2;Runx2;Runx2,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,20,12393,ENSMUSG00000039153,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19146,cg01581739,0.0000144,0.00000313,4.603316723,0.00000607,gain,ns,-0.00000645,0.00000532,-1.210789182,0.226898496,neg,ns,0.003898054,0.001559997,2.498757495,0.012980277,pos,ns,1.886716038,-0.0000714,0.0000536,-1.33179133,0.183907132,neg,ns,0.919388754,Emsy,Emsy_Exon,7,98646503,98646552,98646503,98646504,50,-,CGGTGGCGTTCTGTTGAGATGCTATGAAGAAAAATAGCCATTATAGAACT,"Exon (Emsy-202/Emsy, exon 4 of 20)",7,98587137,98656779,69643,2,Emsy-202,10227,Emsy-202;Emsy-207;Emsy-201;Emsy-211;Emsy-210;Emsy-208;Emsy-209,Emsy;Emsy;Emsy;Emsy;Emsy;Emsy;Emsy,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,13,16,233545,ENSMUSG00000035401,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13077,cg10783532,0.000000812,0.00000686,0.118320885,0.90589004,gain,ns,-0.0000141,0.0000117,-1.210762339,0.226908772,neg,ns,0.00074542,0.003415742,0.218230861,0.827392829,pos,ns,0.082288248,-0.000156883,0.000117467,-1.335548629,0.1826766,neg,ns,0.121860858,Arf6,Arf6_Exon,12,69372988,69373037,69372988,69372989,50,+,CGGCCAGGACAAGATCCGGCCGCTCTGGCGGCATTACTACACTGGGACCC,Promoter (<=1kb),12,69372150,69373783,1634,1,Arf6-201,838,Arf6-201;Gm18113-201,Arf6;Gm18113,0;-2965,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,8,11845,ENSMUSG00000044147,conserved gene and region,12,69371680,69373175,1496,*,1496,186,0.703877005,1.010385046,0.124331551,4.87E-160,CpGisland,TRUE,U1,Pr-A
27551,cg01202508,-0.000000855,0.00000131,-0.650937614,0.515568951,loss,ns,0.0000027,0.00000223,1.210676153,0.226941767,pos,ns,0.000872389,0.000653503,1.334941984,0.182874863,pos,ns,0.737845986,-0.0000422,0.0000225,-1.878707475,0.06122267,neg,ns,0.967221892,Tshz2,Tshz2_Intron,2,169811791,169811840,169811839,169811840,50,-,CAATTAAGTTAGATGTGCCGATAACAATGTCTGTTTTCCATTTTAAATCG,"Intron (Tshz2-202/Tshz2, intron 1 of 2)",2,169633013,169913093,280081,1,Tshz2-202,178778,Tshz2-202;Tshz2-201,Tshz2;Tshz2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,21,30,228911,ENSMUSG00000047907,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3006,cg21162812,0.0000206,0.00000946,2.180717227,0.029955845,gain,ns,0.0000194,0.0000161,1.210666223,0.226945569,pos,ns,0.005791559,0.004706531,1.23053688,0.219429017,pos,ns,0.658705943,-0.000127369,0.000161857,-0.78691967,0.43193007,neg,ns,0.075834947,Asxl3,Asxl3_fiveUTR,18,22344317,22344366,22344317,22344318,50,-,CGTCATCATCAGAACCATCAATGAGATGCAAACATGAAAGACAAGAGGAA,Promoter (<=1kb),18,22344246,22530015,185770,1,Asxl3-204,71,Asxl3-204;Asxl3-203;Asxl3-202;Asxl3-201,Asxl3;Asxl3;Asxl3;Asxl3,0;-517;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,5,211961,ENSMUSG00000045215,conserved gene and region,18,22343836,22344318,483,*,483,82,0.797101449,1.087897599,0.169772257,2.28E-84,CpGisland,TRUE,NA,NRS
2407,cg23628275,-0.00000219,0.00000135,-1.625485209,0.10507537,loss,ns,0.00000277,0.00000229,1.210521964,0.227000804,pos,ns,0.000480646,0.000670744,0.716586539,0.474168755,pos,ns,0.324067067,-0.0000286,0.0000231,-1.241000032,0.215544028,neg,ns,0.963894744,Fosb,Fosb_Exon,7,19307341,19307390,19307389,19307390,50,-,TGAGGGTGGGTTGCACAAGCCACTGGAGGTCCTGGCTGGTTGTGATCGCG,"Exon (Fosb-201/Fosb, exon 2 of 4)",7,19302696,19310051,7356,2,Fosb-201,2661,Fosb-201;Fosb-202;Fosb-203;Fosb-205;Fosb-207;Fosb-206;Fosb-204,Fosb;Fosb;Fosb;Fosb;Fosb;Fosb;Fosb,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,13,14282,ENSMUSG00000003545,mapped to different genes,7,19307356,19307554,199,*,199,14,0.592964824,0.806134259,0.070351759,6.46E-09,CpGisland,TRUE,U13,Hc-P
3432,cg17628370,0.0000124,0.0000083,1.491753436,0.136780699,gain,ns,-0.0000171,0.0000141,-1.210497036,0.22701035,neg,ns,-0.015072498,0.004132191,-3.647580452,0.000310441,neg,ns,3.508020976,0.00039593,0.000142106,2.786167442,0.005662155,pos,ns,0.123285856,Bcl11a,Bcl11a_fiveUTR,11,24078231,24078280,24078231,24078232,50,-,CGCCATCTTTGTATTATTTCTAATTTATTTTGGATGTCAAAAGGCACTGA,Promoter (<=1kb),11,24078056,24173194,95139,1,Bcl11a-201,175,A830031A19Rik-201;Bcl11a-201;Bcl11a-203;Bcl11a-205;Bcl11a-202;Bcl11a-204,A830031A19Rik;Bcl11a;Bcl11a;Bcl11a;Bcl11a;Bcl11a,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,10,98,14025,ENSMUSG00000000861,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20715,cg04102944,-0.0000084,0.00000471,-1.782572645,0.075634437,loss,ns,-0.00000969,0.000008,-1.210468056,0.227021448,neg,ns,-0.006543196,0.002344338,-2.79106362,0.005579307,neg,ns,2.253419746,0.000176295,0.0000806,2.186697938,0.029511797,pos,ns,0.851669883,Dab1,Dab1_Exon,4,104605396,104605445,104605396,104605397,50,-,CGGGGAGACAAGTTATGTCAAGATTCCATGATGAAACTCAAGGTGCTATG,"Exon (Dab1-202/Dab1, exon 5 of 10)",4,103619665,104680382,1060718,1,Dab1-202,985731,Dab1-202;Dab1-206;Dab1-207;Dab1-203;Dab1-201;Dab1-204;Dab1-208,Dab1;Dab1;Dab1;Dab1;Dab1;Dab1;Dab1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,13,13131,ENSMUSG00000028519,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23209,cg04929953,0.00000158,0.00000549,0.287162934,0.774179418,gain,ns,-0.0000113,0.00000933,-1.210448922,0.227028775,neg,ns,0.001994365,0.002733319,0.729649398,0.466155479,pos,ns,0.331469207,-0.0001816,0.000094,-1.931943089,0.05427762,neg,ns,0.563841049,Rnf220,Rnf220_Exon,4,117490042,117490091,117490042,117490043,50,-,CGTCCTTGTCAACTGAGACAGGTACACCAAAGGGTCGTGGCTGCTGACAA,"Exon (Rnf220-201/Rnf220, exon 2 of 15)",4,117271463,117497052,225590,2,Rnf220-201,6961,Rnf220-201;Rnf220-207;Rnf220-204,Rnf220;Rnf220;Rnf220,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,15,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
26423,cg25879860,-0.00000149,0.00000252,-0.593199747,0.553480006,loss,ns,-0.00000518,0.00000428,-1.21042872,0.227036512,neg,ns,-0.002752168,0.001252565,-2.197225077,0.028744004,neg,ns,1.541452732,0.0000157,0.0000431,0.364080299,0.716046244,pos,ns,0.932055895,Gm14106,Gm14106_Intergenic_downstream,2,147691675,147691724,147691723,147691724,50,+,TTCCAAAACTCACAAATACCGAATAGCCAAAAGTTCCAAAGCTGTGCACG,Distal Intergenic,2,147668015,147668452,438,1,Gm14106-201,23660,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21574,cg13990083,-0.000012,0.00000605,-1.988041547,0.047686394,loss,ns,-0.0000124,0.0000103,-1.210367651,0.227059901,neg,ns,0.00028672,0.003013409,0.095147929,0.924258802,pos,ns,0.034206405,-0.000208559,0.000103631,-2.012518001,0.045029876,neg,ns,0.846287618,Celsr2,Celsr2_Exon,3,108399890,108399939,108399938,108399939,50,-,CCATTGGTGGTGACCTCAGCAAAAGGGTTGTCACAGCGGTCACACTGACG,"Exon (Celsr2-201/Celsr2, exon 14 of 34)",3,108390851,108415552,24702,2,Celsr2-201,15613,Celsr2-201;Celsr2-206;Celsr2-202;Celsr2-207,Celsr2;Celsr2;Celsr2;Celsr2,0;0;-3397;2650,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,4,53883,ENSMUSG00000068740,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26678,cg07682101,0.00000451,0.00000249,1.814363788,0.070588274,gain,ns,0.00000512,0.00000423,1.210344581,0.227068736,pos,ns,0.002683374,0.001238532,2.166575621,0.031028829,pos,ns,1.508234614,-0.0000815,0.0000426,-1.91235337,0.056752323,neg,ns,0.939787369,N4bp2l1,N4bp2l1_threeUTR,5,150574016,150574065,150574016,150574017,50,-,CGTTGAATTTCCAGCGAGTGTCAGGTTCTCGGAATATAACTTCATAGTTA,3' UTR,5,150571644,150594525,22882,2,N4bp2l1-201,20460,Brca2-201;Brca2-210;Brca2-206;Brca2-205;Brca2-204;N4bp2l1-201;N4bp2l1-205;N4bp2l1-206;N4bp2l1-207,Brca2;Brca2;Brca2;Brca2;Brca2;N4bp2l1;N4bp2l1;N4bp2l1;N4bp2l1,51386;51372;7475;7194;5428;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,2,100637,ENSMUSG00000041132,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15107,cg10490221,-0.0000039,0.00000324,-1.201880379,0.230327201,loss,ns,-0.00000667,0.00000551,-1.210289317,0.227089904,neg,ns,-0.001130596,0.001613572,-0.70067903,0.48402891,neg,ns,0.315128698,-0.000049,0.0000555,-0.883163332,0.377832389,neg,ns,0.864355331,Zfp827,Zfp827_threeUTR,8,79189747,79189796,79189795,79189796,50,-,AGTGCCGGATCTGCCAGACGGTGAAGGCCAACCAGCTGGAGCTGGAGACG,3' UTR,8,79028437,79193743,165307,1,Zfp827-202,161310,Zfp827-202;Zfp827-203;Zfp827-209;Zfp827-206;Zfp827-205;Zfp827-207;Zfp827-204,Zfp827;Zfp827;Zfp827;Zfp827;Zfp827;Zfp827;Zfp827,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,12,28,622675,ENSMUSG00000071064,conserved gene and region,8,79189795,79190007,213,*,213,16,0.61971831,0.797192983,0.075117371,1.49E-10,CpGisland,TRUE,U11,Tr-P
24896,cg24663507,-0.00000205,0.000004,-0.510866079,0.609808451,loss,ns,0.00000823,0.0000068,1.209848615,0.227258753,pos,ns,0.008822082,0.001993196,4.426097753,0.0000133,pos,ns,4.875874777,-0.000309466,0.0000685,-4.514731885,0.00000902,neg,ns,0.876452478,Plpp4,Plpp4_Exon,7,129316271,129316320,129316319,129316320,50,+,ATTTCTTTCCTCACACCCCTGGCTGTTATTTGTGTGGTGAAAATTATCCG,"Exon (Plpp4-201/Plpp4, exon 3 of 7)",7,129257031,129391412,134382,1,Plpp4-201,59240,Plpp4-201;Plpp4-204;Plpp4-202;Plpp4-203,Plpp4;Plpp4;Plpp4;Plpp4,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,6,381925,ENSMUSG00000070366,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20638,cg15484756,-0.00000836,0.00000451,-1.853324539,0.064785866,loss,ns,-0.00000928,0.00000767,-1.209742473,0.227299433,neg,ns,-0.002458848,0.002246374,-1.094585385,0.274548054,neg,ns,0.561381631,-0.0000124,0.0000773,-0.160034162,0.872958389,neg,ns,0.866730188,Dnajc13,Dnajc13_Exon,9,104209311,104209360,104209359,104209360,50,-,TAGAAGAGATCCCAATTTGCTTCTATTTTTATTCTTTGTCTTCTCTTTCG,"Exon (Dnajc13-201/Dnajc13, exon 21 of 56)",9,104151282,104262930,111649,2,Dnajc13-201,53570,Dnajc13-201;Dnajc13-203,Dnajc13;Dnajc13,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,3,235567,ENSMUSG00000032560,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6386,cg05808198,-0.0000475,0.0000124,-3.833837942,0.000152795,loss,ns,-0.0000255,0.0000211,-1.209690255,0.227319448,neg,ns,-0.019467303,0.006171875,-3.154196067,0.00176718,neg,ns,2.752719267,0.00039573,0.00021225,1.864450143,0.063203456,pos,ns,0.671741392,Pknox2,Pknox2_Intron,9,37101176,37101225,37101176,37101177,50,-,CGCTGCCAAAACAAGAGGAGAAAGCTTCCAACAAAAGTTTGTTTTCATGG,"Intron (Pknox2-201/Pknox2, intron 1 of 12)",9,36890982,37147407,256426,2,Pknox2-201,46182,Pknox2-201;Pknox2-202;Pknox2-210;Pknox2-209;Pknox2-212;Pknox2-211,Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,47,208076,ENSMUSG00000035934,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18303,cg20186200,0.000138909,0.0000112,12.42815262,4.75E-29,gain,yes,-0.000023,0.000019,-1.209609613,0.227350361,neg,ns,0.017633123,0.005562908,3.169767239,0.001678,pos,ns,2.775207992,-0.000264068,0.000191308,-1.380328854,0.168479938,neg,ns,0.230327311,Gm48316,Gm48316_Intergenic_upstream,13,94706910,94706959,94706910,94706911,50,-,CGAGAAACCCATCTCTGGAAACAGCTTCTCCTGGAGGAGTTTGCAGTCTA,Distal Intergenic,13,94752270,94752593,324,1,Gm48316-201,-45360,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,36,42,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
8767,cg09679440,-0.00000392,0.0000013,-3.013906963,0.002791913,loss,ns,0.00000267,0.00000221,1.209579736,0.227361814,pos,ns,0.000984279,0.000647128,1.520995946,0.129280164,pos,ns,0.888468104,-0.0000314,0.0000223,-1.411606006,0.159068904,neg,ns,0.961563186,Lcorl,Lcorl_threeUTR,5,45730647,45730696,45730695,45730696,50,-,CAAAATCTGTCAAAATCAAGGCAGCCACAGAGTTTTACTAAATTACTGCG,3' UTR,5,45697181,45857615,160435,2,Lcorl-202,126919,Lcorl-202;Lcorl-212;Lcorl-210;Lcorl-205;Lcorl-211;Lcorl-204;Lcorl-201,Lcorl;Lcorl;Lcorl;Lcorl;Lcorl;Lcorl;Lcorl,0;0;0;0;-3069;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,5,9,209707,ENSMUSG00000015882,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22968,cg12321772,0.000008,0.00000182,4.397164151,0.0000151,gain,ns,0.00000374,0.00000309,1.209465583,0.227405579,pos,ns,0.001511303,0.000904951,1.670038009,0.095921198,pos,ns,1.018085406,0.0000129,0.0000311,0.41400246,0.679158594,pos,ns,0.949406794,Cnot2,Cnot2_threeUTR,10,116498191,116498240,116498239,116498240,50,+,ATCATTCCAAATTGGTCCGTCACCATCCCTTGAGGAATGTTAGTAACCCG,3' UTR,10,116485161,116581511,96351,2,Cnot2-210,83271,Cnot2-210;Cnot2-204;Cnot2-212;Cnot2-203;Cnot2-202;Cnot2-213;Cnot2-209;Cnot2-219;Cnot2-214;Cnot2-215;Cnot2-205;Cnot2-207,Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,9,15,72068,ENSMUSG00000020166,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27666,cg23178698,-0.0000286,0.00000589,-4.864367841,0.0000018,loss,yes,-0.0000121,0.00001,-1.209355364,0.227447842,neg,ns,-0.004189386,0.002931374,-1.429154537,0.153966712,neg,ns,0.812573165,0.000249111,0.00010081,2.471102327,0.014007051,pos,ns,0.923225796,Sdccag8,Sdccag8_Intron,1,176946342,176946391,176946390,176946391,50,-,GGAGCAGATGCTAACTACACCGGAGATTCCGAATTACATATTAGTTAGCG,"Intron (Sdccag8-204/Sdccag8, intron 15 of 16)",1,176814660,176956360,141701,1,Sdccag8-204,131682,Sdccag8-204;Sdccag8-201;Sdccag8-203,Sdccag8;Sdccag8;Sdccag8,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,20,76816,ENSMUSG00000026504,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1356,cg00193345,0.0000448,0.00000481,9.315303035,2.33E-18,gain,yes,-0.00000987,0.00000817,-1.209159059,0.227523127,neg,ns,0.007655842,0.002392189,3.200350104,0.001514835,pos,ns,2.819634627,-0.00024125,0.0000823,-2.932513424,0.003612745,neg,ns,0.08706401,Sox1,Sox1_Exon,8,12430290,12430339,12430338,12430339,50,-,TCACAAAGCTGATTACAAGCTTCAGCGCATTCCTGAAGGAGCCAAAAGCG,"Exon (Sox1ot-201/Sox1ot-201, exon 7 of 9)",8,12395295,12400126,4832,1,Sox1-201,35044,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,15,20664,ENSMUSG00000096014,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
18975,cg16663789,0.0000245,0.00000468,5.238519387,0.0000003,gain,yes,-0.00000961,0.00000795,-1.209101676,0.227545138,neg,ns,-0.00281124,0.002329283,-1.20691217,0.228386108,neg,ns,0.641330315,-0.0000424,0.0000801,-0.529206759,0.597040764,neg,ns,0.829207601,Nfia,Nfia_Intron,4,98103020,98103069,98103068,98103069,50,-,AAAGATTTACAAAATGTAATCATTGTTGAAATATTCCCTTTGAACTGCCG,"Intron (Nfia-202/Nfia, intron 10 of 10)",4,97777608,98118871,341264,1,Nfia-202,325412,Nfia-202;Nfia-203;Nfia-205;Nfia-201;Nfia-204,Nfia;Nfia;Nfia;Nfia;Nfia,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,44,18027,ENSMUSG00000028565,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
844,cg27644064,0.0000697,0.00000655,10.63816464,9.77E-23,gain,yes,0.0000135,0.0000111,1.209095563,0.227547483,pos,ns,0.010428481,0.003261332,3.197613601,0.001528813,pos,ns,2.815645526,-0.000104193,0.000112157,-0.928990639,0.353616728,neg,ns,0.073435087,Nxph1,Nxph1_Intron,6,8956271,8956320,8956271,8956272,50,+,CGAATGAATTACGTTTAATGAAAGTGCTCCCCAGATGAATATTACCAGCA,"Intron (Nxph1-202/Nxph1, intron 2 of 2)",6,8948614,9249032,300419,1,Nxph1-202,7657,Nxph1-203;Nxph1-202;Nxph1-201,Nxph1;Nxph1;Nxph1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,12,18231,ENSMUSG00000046178,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
26961,cg08272562,0.0000322,0.00000494,6.524804132,2.77E-10,gain,yes,-0.0000101,0.00000839,-1.20905816,0.22756183,neg,ns,-0.0000978,0.002458538,-0.03978636,0.968289062,neg,ns,0.013994974,0.0000687,0.0000845,0.812204525,0.417297532,pos,ns,0.907799885,Myh7b,Myh7b_Exon,2,155615424,155615473,155615424,155615425,50,-,CGGTTAACACCAAGCGGGTCATTCAGTACTTTGCCATCGTCGCTGCCCTG,"Exon (Myh7b-201/Myh7b, exon 7 of 42)",2,155611212,155634307,23096,1,Myh7b-201,4212,Myh7b-201,Myh7b,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,6,668940,ENSMUSG00000074652,conserved gene and region,2,155615401,155615515,115,*,115,11,0.626086957,0.98828125,0.095652174,1.73E-08,CpGisland,TRUE,U11,Tr-P
15647,cg09057193,-0.0000307,0.00000579,-5.307774628,0.000000212,loss,yes,0.0000119,0.00000984,1.209029129,0.227572967,pos,ns,0.008082831,0.002883017,2.803601803,0.005372136,pos,ns,2.269853004,-0.000127046,0.0000991,-1.281389205,0.201014645,neg,ns,0.884189711,Nfib,Nfib_Exon,4,82498636,82498685,82498684,82498685,50,+,CTTTCTTCATCCTTTGACATTCGCTTCTCATGCTTTTTAAAGTACTTGCG,"Exon (Nfib-201/Nfib, exon 2 of 12)",4,82290173,82505308,215136,2,Nfib-201,6623,Nfib-201;Nfib-203;Nfib-202;Nfib-205;Nfib-206;Nfib-204;Nfib-207;Nfib-209;Nfib-210;Nfib-208;Nfib-212;Nfib-211,Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,14,66,18028,ENSMUSG00000008575,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14656,cg12854176,0.000260186,0.0000208,12.51446175,2.31E-29,gain,yes,-0.0000427,0.0000353,-1.20899512,0.227586013,neg,ns,0.032687949,0.010347804,3.158926117,0.001739637,pos,ns,2.759541311,-0.000548706,0.00035586,-1.541914131,0.124114604,neg,ns,0.62464515,Rbfox2,Rbfox2_Exon,15,77105587,77105636,77105587,77105588,50,+,CGGCCCTCTACCACGGTGCCGTGTAATTTCTCCCTGGCCCTGTCTGCATC,"Exon (Rbfox2-204/Rbfox2, exon 6 of 14)",15,77078990,77306928,227939,2,Rbfox2-204,201292,Rbfox2-204;Rbfox2-203;Rbfox2-202;Rbfox2-206;Rbfox2-208;Rbfox2-209;Rbfox2-201;Rbfox2-207;Rbfox2-212;Rbfox2-213,Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,20,93686,ENSMUSG00000033565,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26103,cg11956374,-0.0000195,0.00000746,-2.609097091,0.009518332,loss,ns,0.0000153,0.0000127,1.208807837,0.22765787,pos,ns,-0.009166028,0.00371067,-2.470181223,0.014042456,neg,ns,1.852556923,0.00012849,0.00012761,1.006898245,0.314768955,pos,ns,0.831228977,Gm2505,Gm2505_Intron,3,143914577,143914626,143914577,143914578,50,-,CGGTCATGTAGAACAATGCATAAAATTAAATTGACATTAATGAATAATTG,"Intron (Gm42707-202/Gm42707-202, intron 1 of 1)",3,143872995,143873819,825,1,Gm2505-201,41631,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,37,100039938,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23442,cg09382101,0.000000819,0.00000101,0.808014576,0.41970179,gain,ns,-0.00000208,0.00000172,-1.208737776,0.227684755,neg,ns,-0.0000108,0.000504684,-0.02145957,0.98289286,neg,ns,0.00749382,-0.0000148,0.0000174,-0.849861239,0.396058109,neg,ns,0.973544641,Eif2ak4,Eif2ak4_Exon,2,118436247,118436296,118436247,118436248,50,+,CGAGAGATTCTGGATGGATTAGCTTATATCCATGAGAAAGTAAACTTTAC,"Exon (Eif2ak4-201/Eif2ak4, exon 15 of 39)",2,118388618,118475234,86617,1,Eif2ak4-201,47629,Eif2ak4-201;Eif2ak4-206;Eif2ak4-202;Eif2ak4-205;Eif2ak4-204;Eif2ak4-203,Eif2ak4;Eif2ak4;Eif2ak4;Eif2ak4;Eif2ak4;Eif2ak4,0;0;0;0;0;-2546,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,27103,ENSMUSG00000005102,conserved gene and region,2,118436124,118436248,125,*,125,9,0.592,0.827205882,0.072,0.00000584,CpGisland,TRUE,U10,Tr-S
16747,cg25081986,0.0000742,0.0000175,4.232810201,0.0000304,gain,ns,0.000036,0.0000298,1.208723717,0.22769015,pos,ns,0.0097531,0.008724011,1.117960551,0.264449458,pos,ns,0.577657318,0.000014,0.000300018,0.046532375,0.962915892,pos,ns,0.504972584,Esrrb,Esrrb_Intron,12,86384004,86384053,86384004,86384005,50,-,CGACATGCATTTTTAATCATAACAAAACAGAATGACAAAGGGAGTCATTT,"Intron (Esrrb-204/Esrrb, intron 1 of 6)",12,86361117,86521628,160512,1,Esrrb-204,22887,Esrrb-204,Esrrb,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,19,26380,ENSMUSG00000021255,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20712,cg12358638,-0.00000771,0.00000842,-0.916088251,0.360332685,loss,ns,0.0000173,0.0000143,1.208667382,0.22771177,pos,ns,0.010085507,0.004191069,2.40642846,0.016694186,pos,ns,1.777434753,-0.000416081,0.000144131,-2.886832939,0.004164802,neg,ns,0.811518286,Rnf219,Rnf219_Intergenic_upstream,14,104567869,104567918,104567917,104567918,50,+,CCGCCTCTCCCATTGTAAGTATTGAAGCAATATGTTTTGCAAATTATACG,Distal Intergenic,14,104502386,104522645,20260,2,Rnf219-202,-45224,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,7,72486,ENSMUSG00000022120,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13858,cg22114053,0.0000243,0.00000262,9.260548666,3.49E-18,gain,yes,-0.00000539,0.00000446,-1.208594706,0.227739663,neg,ns,0.005869651,0.001306161,4.493818815,0.00000989,pos,ns,5.004796557,-0.000125305,0.0000449,-2.789601141,0.005603938,neg,ns,0.0572267,Six4,Six4_fiveUTR,12,73113379,73113428,73113427,73113428,50,-,TAGAGCAAAGTAGTGTAAACGGATAGCTGCTTTCTGCCGTTCCCCCAACG,Promoter (<=1kb),12,73099609,73113425,13817,2,Six4-201,0,Six4-201;Six4-202,Six4;Six4,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,8,20474,ENSMUSG00000034460,conserved gene and region,12,73113398,73113554,157,*,157,13,0.617834395,0.888937282,0.082802548,3.52E-09,CpGisland,TRUE,U3,Pr-B
14153,cg04734735,0.0000381,0.00000388,9.799757696,6.29E-20,gain,yes,0.00000797,0.0000066,1.208503513,0.227774667,pos,ns,0.001628616,0.00193271,0.842659324,0.400068664,pos,ns,0.397865465,0.0000296,0.0000665,0.444596337,0.65692173,pos,ns,0.125143835,Hoxd8,Hoxd8_fiveUTR,2,74706003,74706052,74706051,74706052,50,-,CGAGCTGGTACAATATCCTGACTGTAAATCGTCCAGTGGTAATATTGGCG,5' UTR,2,74704615,74706812,2198,1,Hoxd8-203,1388,Hoxd8-203;Hoxd8-201;Hoxd8-202,Hoxd8;Hoxd8;Hoxd8,0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,9,10,15437,ENSMUSG00000027102,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
17553,cg13255510,0.0000484,0.0000119,4.065241141,0.0000609,gain,ns,0.0000244,0.0000202,1.208341086,0.227837022,pos,ns,0.026323834,0.005922789,4.444499522,0.0000123,pos,ns,4.910751925,-0.000642776,0.000203684,-3.155746168,0.00175811,neg,ns,0.083136095,Chd9,Chd9_fiveUTR,8,90954921,90954970,90954969,90954970,50,-,TAGCACCATCTGCTGGCCTACTTCCGCAGAAGGAGTCAGTATTTTTAACG,Promoter (<=1kb),8,90954958,91006545,51588,1,Chd9-210,0,Chd9-201;Chd9-202;Chd9-213;Chd9-203;Chd9-205;Chd9-210;Chd9-208;Chd9-204,Chd9;Chd9;Chd9;Chd9;Chd9;Chd9;Chd9;Chd9,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,5,109151,ENSMUSG00000056608,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18623,cg10861326,0.000188868,0.0000148,12.72074526,4.09E-30,gain,yes,-0.0000305,0.0000252,-1.208197662,0.227892093,neg,ns,0.0199983,0.007389626,2.70626671,0.00718127,pos,ns,2.143798734,-0.000174923,0.000254129,-0.688326322,0.491762068,neg,ns,0.20424739,Hoxb3,Hoxb3_fiveUTR,11,96341138,96341187,96341138,96341139,50,-,CGTCGGTGGCTAAGGTAAGCTGGACTGAAATAGGCTATCAGTTTGTGAAT,5' UTR,11,96323326,96347930,24605,1,Hoxb3-202,17812,Hoxb3-202;Hoxb3-203;Hoxb3-204;Hoxb3-201,Hoxb3;Hoxb3;Hoxb3;Hoxb3,0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,19,15410,ENSMUSG00000048763,conserved gene and region,11,96341078,96341142,65,*,65,7,0.584615385,1.274509804,0.107692308,0.00000802,CpGisland,TRUE,U3,Pr-B
5899,cg15036140,-0.0000055,0.00000189,-2.90666777,0.003916274,loss,ns,0.00000388,0.00000321,1.208169566,0.227902882,pos,ns,0.001458243,0.000941879,1.548227542,0.122587772,pos,ns,0.911552849,-0.000063,0.0000324,-1.945663314,0.052598797,neg,ns,0.04026057,Rab14,Rab14_fiveUTR,2,35200985,35201034,35200985,35200986,50,-,CGGCGCTCCCTGCACAGGGTTTCCTGTCACCCTCGCAATGGGCCGGACCA,Promoter (<=1kb),2,35180205,35201120,20916,2,Rab14-201,86,Rab14-201;Rab14-202;Rab14-213;Rab14-211;Rab14-206;Rab14-207;Rab14-210;Rab14-203,Rab14;Rab14;Rab14;Rab14;Rab14;Rab14;Rab14;Rab14,0;0;0;-13;-196;-38;-3;-7,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,3,68365,ENSMUSG00000026878,conserved gene but different region,2,35200791,35201385,595,*,595,58,0.660504202,0.899353695,0.097478992,1.52E-43,CpGisland,TRUE,U1,Pr-A
21302,cg06734419,0.00000132,0.00000511,0.258808834,0.795954503,gain,ns,-0.0000105,0.00000868,-1.208114881,0.227923883,neg,ns,-0.001064894,0.002542786,-0.418790285,0.675659412,neg,ns,0.170272169,-0.0000521,0.0000874,-0.595894181,0.551680742,neg,ns,0.080546705,Gm2726,Gm2726_Intergenic_downstream,13,107247558,107247607,107247606,107247607,50,+,GTGGCCATTTAGGCTTAATTGCTCCTCACAGCATAGTCCAATTAAGAACG,Distal Intergenic,13,107279615,107280191,577,2,Gm2726-201,32584,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,3,100040350,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24245,cg23438753,0.0000534,0.0000108,4.946065134,0.00000124,gain,yes,0.0000221,0.0000183,1.20794464,0.227989269,pos,ns,0.006063978,0.005371391,1.128939976,0.259796021,pos,ns,0.585367504,0.000200147,0.000184722,1.083507266,0.279425327,pos,ns,0.40860634,Gm12902,Gm12902_Intergenic_downstream,4,124196906,124196955,124196954,124196955,50,+,TAATCAAATCTTACCGGAGAGAGCCTCCTGCAGCTGCTGGCAGGTCAGCG,Distal Intergenic,4,123926234,123926555,322,1,Gm12902-201,270672,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,34,34,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10792,cg04019442,-0.0000123,0.00000489,-2.507412881,0.012672963,loss,ns,0.00001,0.00000831,1.207833035,0.228032141,pos,ns,0.00292772,0.002433888,1.202898377,0.229933544,pos,ns,0.638397666,-0.000205133,0.0000837,-2.450782337,0.014806765,neg,ns,0.581643975,Kcnj3,Kcnj3_Exon,2,55447002,55447051,55447002,55447003,50,-,CGAGATTGTCGTCATCCTAGAAGGCATTGTGGAAACAACTGGTGAGTAAA,"Exon (Kcnj3-201/Kcnj3, exon 3 of 4)",2,55435970,55598145,162176,1,Kcnj3-201,11032,Kcnj3-201;Kcnj3-203;Kcnj3-202,Kcnj3;Kcnj3;Kcnj3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,6,16519,ENSMUSG00000026824,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23469,cg24107977,-0.000000106,0.00000257,-0.041200261,0.967162768,loss,ns,0.00000527,0.00000436,1.207830196,0.228033232,pos,ns,0.000816285,0.001278525,0.638458028,0.52364695,pos,ns,0.280961421,0.00000698,0.000044,0.158840499,0.87389797,pos,ns,0.932619312,Golga4,Golga4_Exon,9,118537284,118537333,118537284,118537285,50,-,CGTGATGCAAAGAACTTAATTGAACAGCTTGAACAAGATAAGGTAAAACA,"Exon (Golga4-201/Golga4, exon 10 of 24)",9,118506267,118582519,76253,1,Golga4-201,31017,Golga4-201;Golga4-206;Golga4-210;Golga4-208,Golga4;Golga4;Golga4;Golga4,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,54214,ENSMUSG00000038708,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9931,cg00621125,0.0000107,0.0000042,2.534475442,0.011753423,gain,ns,0.00000862,0.00000714,1.207764465,0.228058485,pos,ns,0.002774958,0.002091637,1.326691993,0.185587039,pos,ns,0.731452358,-0.0000747,0.0000719,-1.038255074,0.29996046,neg,ns,0.032922369,Snx10,Snx10_Intergenic_downstream,6,51612816,51612865,51612864,51612865,50,-,TGAAGTTGTCAGCGGCGCCCCGAGTGTGGCAGAGCCTGATATTCAAATCG,Distal Intergenic,6,51544566,51589043,44478,1,Snx10-205,68299,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,10,71982,ENSMUSG00000038301,mapped to different genes,6,51612600,51612978,379,*,379,46,0.707124011,0.972879464,0.121372032,1.85E-39,CpGisland,TRUE,U2,Pr-W
9322,cg15673180,0.0000325,0.00000647,5.026923743,0.000000844,gain,yes,-0.0000133,0.000011,-1.207623452,0.228112668,neg,ns,0.0089224,0.003218075,2.772589295,0.005897777,pos,ns,2.229311625,-0.000197836,0.000110669,-1.78763143,0.074812215,neg,ns,0.205339219,Nxpe4,Nxpe4_Intron,9,48140916,48140965,48140964,48140965,50,+,ATTAATACTTAACTAGGAGGCCCTGTTTATTGTCTGGGGTCACTTCAGCG,"Intron (Gm40518-201/Gm40518-201, intron 1 of 2)",9,48162023,48399871,237849,1,Nxpe4-203,-21058,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,7,244853,ENSMUSG00000044229,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1862,cg11165223,-0.0000262,0.00000808,-3.242472511,0.001314069,loss,ns,0.0000166,0.0000137,1.207307004,0.228234292,pos,ns,-0.002332699,0.00401935,-0.580367091,0.562088712,neg,ns,0.250195136,-0.000218629,0.000138225,-1.581687366,0.114740653,neg,ns,0.650927354,Gli3,Gli3_Intron,13,15670847,15670896,15670847,15670848,50,+,CGAGGCTTGTCGCTATCAGTACCTGCTTGTCGATTCTCTGTAACAGGGCT,"Intron (Gli3-202/Gli3, intron 10 of 11)",13,15463235,15715091,251857,1,Gli3-202,207612,Gli3-202;Gli3-201,Gli3;Gli3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,19,21,14634,ENSMUSG00000021318,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16373,cg09068070,0.000207147,0.0000201,10.29088207,1.47E-21,gain,yes,0.0000413,0.0000342,1.20729686,0.228238192,pos,ns,0.057052095,0.010018487,5.694681781,2.87E-08,pos,ns,7.542144346,-0.001862346,0.000344535,-5.405391022,0.000000129,neg,yes,0.709457318,Rfx4,Rfx4_Exon,10,84780056,84780105,84780056,84780057,50,+,CGTTATTCCAGCCACACATCTCTGGGGAATGTTTCTAATGATGAAAGTAA,"Exon (Rfx4-202/Rfx4, exon 2 of 18)",10,84756062,84906144,150083,1,Rfx4-202,23994,Rfx4-202;Rfx4-204;Rfx4-206,Rfx4;Rfx4;Rfx4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,13,71137,ENSMUSG00000020037,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8474,cg03906023,0.00000514,0.00000336,1.530567853,0.126896015,gain,ns,-0.00000688,0.0000057,-1.207231078,0.228263481,neg,ns,0.002174894,0.00167055,1.30190276,0.193916182,pos,ns,0.712385948,0.00000438,0.0000575,0.076267883,0.939255174,pos,ns,0.070580427,Lbx1,Lbx1_Intergenic_downstream,19,45223678,45223727,45223726,45223727,50,-,CTTTCCAGGAAATTTCACAATTAAAAATATTTATCGGGAGCAGATTTACG,Distal Intergenic,19,45232684,45235812,3129,2,Lbx1-201,12134,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,30,50,16814,ENSMUSG00000025216,mapped to different genes,19,45223712,45223906,195,*,195,15,0.564102564,0.969827586,0.076923077,4.54E-10,CpGisland,TRUE,U13,Hc-P
6983,cg18532887,-0.0000214,0.00000425,-5.02889141,0.000000836,loss,yes,-0.00000871,0.00000721,-1.207184319,0.228281458,neg,ns,-0.006515349,0.002113235,-3.083116651,0.002232615,neg,ns,2.651186252,0.000101916,0.0000727,1.402371529,0.161804926,pos,ns,0.920096303,Sorbs1,Sorbs1_Exon,19,40344387,40344436,40344435,40344436,50,+,TTATACCAAGGTTCATTCTTTAAATCTATCTCTTCTGGGCTTATATCCCG,"Exon (Sorbs1-211/Sorbs1, exon 14 of 27)",19,40294753,40376874,82122,2,Sorbs1-227,32438,Sorbs1-227;Sorbs1-225;Sorbs1-208;Sorbs1-212;Sorbs1-211;Sorbs1-213;Sorbs1-226;Sorbs1-221;Sorbs1-201;Sorbs1-202;Sorbs1-203;Sorbs1-204;Sorbs1-206;Sorbs1-224,Sorbs1;Sorbs1;Sorbs1;Sorbs1;Sorbs1;Sorbs1;Sorbs1;Sorbs1;Sorbs1;Sorbs1;Sorbs1;Sorbs1;Sorbs1;Sorbs1,0;0;0;0;0;0;0;0;0;0;0;0;0;-3793,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,7,20411,ENSMUSG00000025006,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26794,cg21764531,-0.0000128,0.00000628,-2.040668249,0.04213071,loss,ns,0.0000129,0.0000107,1.207140911,0.228298147,pos,ns,0.000580903,0.003126546,0.185797,0.85272547,pos,ns,0.069190765,-0.000072,0.000107522,-0.669607547,0.503606425,neg,ns,0.820818935,Usp33,Usp33_threeUTR,3,152374634,152374683,152374634,152374635,50,-,CGAGACCTTTCAAGATCTGTCCTTGCCAATTCCTGGCAAGGAAGACCTTG,3' UTR,3,152346478,152393333,46856,1,Usp33-202,28156,Usp33-202;Usp33-201;Usp33-209;Usp33-203;Usp33-211;Usp33-208,Usp33;Usp33;Usp33;Usp33;Usp33;Usp33,0;0;0;0;8358;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,2,170822,ENSMUSG00000025437,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11599,cg07623169,-0.0000313,0.0000105,-2.980704859,0.003103529,loss,ns,-0.0000215,0.0000179,-1.207025785,0.228342416,neg,ns,-0.003798782,0.005229768,-0.72637677,0.468155917,neg,ns,0.329609483,0.0000718,0.000179851,0.399379692,0.68988846,pos,ns,0.783695596,Arih1,Arih1_Exon,9,59426122,59426171,59426170,59426171,50,-,CATAACTGTGTTGTCATCCACTAAGATATCACAACCATGAGCAGGACACG,"Exon (Arih1-207/Arih1, exon 5 of 14)",9,59388258,59486614,98357,2,Arih1-207,60443,Arih1-207;Arih1-201;Arih1-202;Arih1-204,Arih1;Arih1;Arih1;Arih1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,13,23806,ENSMUSG00000025234,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5080,cg13395878,0.000000658,0.00000438,0.150246676,0.880667712,gain,ns,-0.00000898,0.00000744,-1.206688856,0.228472006,neg,ns,-0.003546817,0.002180675,-1.626476976,0.104864267,neg,ns,0.979372472,-0.0000339,0.000075,-0.452098825,0.651513965,neg,ns,0.858366977,Brd4,Brd4_Exon,17,32198509,32198558,32198509,32198510,50,+,CGGATGCTTCTGCACTAGGCTGGCCCAGGAGCCCATGTTCTTGATTTTCA,"Exon (Brd4-201/Brd4, exon 18 of 20)",17,32196274,32284097,87824,2,Brd4-201,85539,Brd4-201;Brd4-203;Brd4-207;Brd4-206;Brd4-208,Brd4;Brd4;Brd4;Brd4;Brd4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,5,57261,ENSMUSG00000024002,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1438,cg12907928,-0.0000576,0.0000115,-5.011110852,0.000000911,loss,yes,0.0000236,0.0000195,1.206657791,0.228483958,pos,ns,-0.01385697,0.005723132,-2.421221332,0.016042346,neg,ns,1.794732133,0.000342221,0.000196818,1.738768752,0.083068216,pos,ns,0.68378529,Rpl36-ps3,Rpl36-ps3_Exon,12,12907012,12907061,12907012,12907013,50,+,CGTAAATAGGACTTCCTTTTAGGAAATGAGCTGCTGTAATTAAATCCCCA,Promoter (4-5kb),12,12912022,12912336,315,1,Rpl36-ps3-201,-4961,Rpl36-ps3-201,Rpl36-ps3,-4961,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,20,100043215,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2457,cg04547312,-0.0000199,0.00000392,-5.074710126,0.00000067,loss,yes,-0.00000803,0.00000665,-1.206573155,0.22851652,neg,ns,-0.000366536,0.001948797,-0.188083408,0.850934324,neg,ns,0.070103958,-0.000172929,0.000067,-2.58030525,0.01033114,neg,ns,0.842266828,Clasrp,Clasrp_threeUTR,7,19584771,19584820,19584819,19584820,50,+,AATTCTTACTGACTTTGGCAGCTCCTGTCTCTTTACCAGCGGCAGGTTCG,3' UTR,7,19581035,19604486,23452,2,Clasrp-201,19666,Clasrp-201;Clasrp-210;Clasrp-211;Clasrp-212;Clasrp-202;Clasrp-208;Clasrp-207;Clasrp-209;Clasrp-205;Clasrp-206;Clasrp-203;Clasrp-213;Zfp296-201,Clasrp;Clasrp;Clasrp;Clasrp;Clasrp;Clasrp;Clasrp;Clasrp;Clasrp;Clasrp;Clasrp;Clasrp;Zfp296,0;-1785;0;-3089;0;0;0;0;0;0;1871;1038;7484,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,3,53609,ENSMUSG00000061028,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
108,cg10106561,-0.00000136,0.00000197,-0.693327788,0.488623,loss,ns,-0.00000403,0.00000334,-1.206549294,0.228525701,neg,ns,-0.001398774,0.000978737,-1.429162258,0.153964495,neg,ns,0.812579418,0.0000285,0.0000337,0.847470447,0.397386764,pos,ns,0.964031216,Adcy3,Adcy3_Exon,12,4206481,4206530,4206481,4206482,50,+,CGCCACCATCATGCTGGTGCAGGTCAGCCACATGGTGAAGCTCACGCTCA,"Exon (Adcy3-208/Adcy3, exon 14 of 21)",12,4133103,4213525,80423,1,Adcy3-208,73378,Adcy3-208;Adcy3-202;Adcy3-207;Adcy3-204;Adcy3-201;Adcy3-203;Cenpo-206;Cenpo-202,Adcy3;Adcy3;Adcy3;Adcy3;Adcy3;Adcy3;Cenpo;Cenpo,0;0;0;0;0;3213;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,104111,ENSMUSG00000020654,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27640,cg13340108,-0.00000228,0.00000129,-1.766621898,0.078275611,loss,ns,0.00000265,0.0000022,1.20651911,0.228537315,pos,ns,0.000534303,0.000643513,0.830290705,0.407013404,pos,ns,0.390391288,-0.0000151,0.0000221,-0.684134441,0.494401371,neg,ns,0.040423498,Stx16,Stx16_fiveUTR,2,174077084,174077133,174077132,174077133,50,+,TTTCTTGTTGTTGCGGAATAATTCCATCCAAAACCGGCAGCTGTTAGCCG,Promoter (<=1kb),2,174076308,174092433,16126,1,Stx16-205,776,Stx16-205;Stx16-203;Stx16-204;Stx16-202;Stx16-201;Stx16-206,Stx16;Stx16;Stx16;Stx16;Stx16;Stx16,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,6,6,228960,ENSMUSG00000027522,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
3459,cg06772440,-0.0000458,0.00000686,-6.68174972,1.10E-10,loss,yes,0.0000141,0.0000117,1.206375924,0.228592415,pos,ns,-0.006495073,0.003413193,-1.902931869,0.057975704,neg,ns,1.236753971,0.0000108,0.000117379,0.09223308,0.926572431,pos,ns,0.83243533,Bcl11a,Bcl11a_Intron,11,24099601,24099650,24099601,24099602,50,+,CGTACTGGTTGTAAAAAGTGTGCTTGCATTTAATTGCAAGTCAGGGTAAA,"Intron (Bcl11a-201/Bcl11a, intron 2 of 4)",11,24078056,24173194,95139,1,Bcl11a-201,21545,Bcl11a-201;Bcl11a-203;Bcl11a-202;Bcl11a-204,Bcl11a;Bcl11a;Bcl11a;Bcl11a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,98,14025,ENSMUSG00000000861,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19976,cg10538533,-0.00000158,0.00000466,-0.339452088,0.734499036,loss,ns,0.00000955,0.00000791,1.206166127,0.228673165,pos,ns,-0.003300726,0.002318458,-1.423672972,0.155546861,neg,ns,0.808138749,0.0000881,0.0000797,1.10555891,0.269774747,pos,ns,0.80610811,Krt1,Krt1_Promoter,15,101850875,101850924,101850923,101850924,50,+,GTTTGGCTTGCCTGCAGCCATACAAGATTTTTACGAGCCTCAACAATACG,Promoter (<=1kb),15,101845426,101850794,5369,2,Krt1-201,-81,Krt1-201;Krt1-203;Krt1-202,Krt1;Krt1;Krt1,-81;-1914;-4281,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,2,16678,ENSMUSG00000046834,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23381,cg01689963,0.00000706,0.00000648,1.090925268,0.276152959,gain,ns,0.0000133,0.000011,1.20604721,0.228718945,pos,ns,0.0000136,0.003222966,0.004230149,0.996627561,pos,ns,0.001467107,-0.000196289,0.000110838,-1.770959582,0.077550003,neg,ns,0.694832484,Sox21,Sox21_Exon,14,118212479,118212528,118212479,118212480,50,+,CGCTTGGACTTTATCCTGGTGGTAATGAAGAGATAATGAAGATTTTTAAT,"Exon (4933431J24Rik-201/4933431J24Rik-201, exon 1 of 2)",14,118233232,118237030,3799,2,Sox21-201,24502,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,27,223227,ENSMUSG00000061517,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
12449,cg02797566,0.0000365,0.00000629,5.799984903,1.64E-08,gain,yes,-0.0000129,0.0000107,-1.205991185,0.228740515,neg,ns,0.003467242,0.003132802,1.106754244,0.269258272,pos,ns,0.569830946,-0.0000687,0.000107737,-0.637983824,0.523955183,neg,ns,0.081996137,Onecut2,Onecut2_Exon,18,64341538,64341587,64341586,64341587,50,-,GAGACCTTCCGCAGGATGTGGAAGTGGCTTCAGGAGCCCGAGTTCCAGCG,"Exon (Onecut2-201/Onecut2, exon 1 of 2)",18,64340020,64400987,60968,1,Onecut2-201,1518,Onecut2-201,Onecut2,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,19,225631,ENSMUSG00000045991,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
12061,cg13665681,-0.0000279,0.00000919,-3.034756694,0.002611187,loss,ns,-0.0000188,0.0000156,-1.205831313,0.228802076,neg,ns,-0.005709297,0.004572779,-1.248539865,0.212775504,neg,ns,0.672078372,0.0000966,0.000157257,0.614089842,0.539606348,pos,ns,0.886396242,Efna5,Efna5_Intron,17,62625734,62625783,62625782,62625783,50,-,AGCAGATCATGAAGCAAATGTTTTATGCCAAATCAGAGTCTGGGGATACG,"Intron (Efna5-201/Efna5, intron 2 of 4)",17,62604184,62881317,277134,2,Efna5-201,255534,Efna5-201;Efna5-202,Efna5;Efna5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,21,13640,ENSMUSG00000048915,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26697,cg22033801,-0.00000778,0.00000319,-2.442140336,0.015158959,loss,ns,0.00000652,0.00000541,1.205828373,0.228803208,pos,ns,-0.000309199,0.001585248,-0.195047852,0.845483258,neg,ns,0.072894988,-0.000000966,0.0000545,-0.017723814,0.985870584,neg,ns,0.927660306,Camta1,Camta1_Intron,4,151315960,151316009,151315960,151315961,50,-,CGCTCAGATTAATGAATGACAGTAGTTCTCATCACAGGAAATTTGATTAA,"Intron (Camta1-211/Camta1, intron 5 of 24)",4,150917322,151861669,944348,2,Camta1-211,545660,Camta1-211;Camta1-202;Camta1-201,Camta1;Camta1;Camta1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,22,100072,ENSMUSG00000014592,conserved gene and region,4,151315880,151315980,101,*,101,9,0.504950495,1.57266436,0.089108911,0.000001,CpGisland,TRUE,U15,NS
15873,cg27342331,-0.0000298,0.0000219,-1.362584499,0.174002553,loss,ns,0.0000448,0.0000371,1.205771963,0.228824932,pos,ns,-0.007153983,0.010880391,-0.657511542,0.511339952,neg,ns,0.291290274,0.000235777,0.000374176,0.630124267,0.529077469,pos,ns,0.312201064,Gm6411,Gm6411_Exon,13,83738852,83738901,83738900,83738901,50,-,GTCTTCATAAAGCTAGATAACCGAAAGTAAAAACTCCTTCAAGATCGCCG,"Exon (C130071C03Rik-201/C130071C03Rik-201, exon 4 of 4)",13,83761132,83762335,1204,2,Gm6411-201,23483,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,36,623241,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
19050,cg06190062,-0.0000572,0.000014,-4.094094457,0.0000541,loss,ns,0.0000286,0.0000237,1.205719355,0.228845194,pos,ns,-0.008432545,0.006955012,-1.21244141,0.226266649,neg,ns,0.645379455,0.00022418,0.000239182,0.937277454,0.349345481,pos,ns,0.827722031,Cdk12,Cdk12_Intergenic_downstream,11,98284620,98284669,98284668,98284669,50,+,TTCTAACACTCTGCTTGTGGTCATATTAGAAAAACAGATTATGCCCCTCG,Distal Intergenic,11,98263502,98268011,4510,1,Cdk12-204,21118,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,25,69131,ENSMUSG00000003119,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18527,cg12543192.1,0.0000894,0.00000935,9.5539024,3.98E-19,gain,yes,-0.0000192,0.0000159,-1.20565641,0.228869438,neg,ns,0.013459448,0.004655341,2.891184299,0.00410908,pos,ns,2.386255405,-0.000398596,0.000160097,-2.489716851,0.013308326,neg,ns,0.055405675,Hoxb9,Hoxb9_Exon,11,96274653,96274702,96274653,96274654,50,-,CGCTCTTCCCGGAAAAAGCGCTGTCCCTACACCAAATACCAGACGCTGGA,"Exon (Hoxb9-201/Hoxb9, exon 2 of 2)",11,96271457,96276595,5139,1,Hoxb9-201,3196,Hoxb9-201;Hoxb9-202,Hoxb9;Hoxb9,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,22,15417,ENSMUSG00000020875,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
14625,cg05098689,-0.00000218,0.00000283,-0.769128077,0.442402878,loss,ns,-0.00000579,0.0000048,-1.205646015,0.228873442,neg,ns,-0.001800551,0.00140754,-1.279218027,0.201776961,neg,ns,0.695128424,-0.0000289,0.0000484,-0.596439532,0.551316924,neg,ns,0.928369283,Max,Max_threeUTR,12,76939486,76939535,76939534,76939535,50,+,CAAAGAACTTGATCAGCTCTCGCTTTCCCCTGTGGTTGTAGGAAAAGGCG,3' UTR,12,76937269,76962185,24917,2,Max-202,22650,Max-202;Max-201;Max-205;Max-206;Max-204,Max;Max;Max;Max;Max,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,5,17187,ENSMUSG00000059436,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26087,cg16392150,-0.00000288,0.00000122,-2.35924119,0.018932245,loss,ns,0.0000025,0.00000207,1.20546168,0.228944453,pos,ns,0.000532721,0.000607331,0.877150246,0.381084282,pos,ns,0.418978963,-0.0000481,0.0000209,-2.304780324,0.021839366,neg,ns,0.967814938,Gm2505,Gm2505_Intron,3,143822562,143822611,143822562,143822563,50,+,CGCATGTTAAAAGCCTATAAGTGCTTCTGTTCTTGAACAAAGTGAAATCA,"Intron (Gm42705-201/Gm42705-201, intron 5 of 5)",3,143872995,143873819,825,1,Gm2505-201,-50384,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,37,100039938,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16890,cg11025714,-0.0000755,0.0000117,-6.460889521,4.03E-10,loss,yes,0.0000239,0.0000198,1.205454417,0.228947251,pos,ns,-0.002529977,0.005815366,-0.435050282,0.663828644,neg,ns,0.177944012,-0.00038043,0.00019999,-1.902247125,0.05806547,neg,ns,0.528174936,Kirrel,Kirrel_Exon,3,87088458,87088507,87088506,87088507,50,-,GCAGCAGCTGGTTGCTGTTACTCAGGACCTGGGCAGAGAGAGCAGCCTCG,"Exon (Kirrel-203/Kirrel, exon 10 of 16)",3,87078593,87174700,96108,2,Kirrel-203,86193,Kirrel-203;Kirrel-202;Kirrel-201,Kirrel;Kirrel;Kirrel,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,170643,ENSMUSG00000041734,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
816,cg11681502,-0.00000908,0.00000443,-2.050612123,0.041145261,loss,ns,-0.00000907,0.00000753,-1.20537093,0.228979419,neg,ns,-0.001719924,0.002204892,-0.780049194,0.435957084,neg,ns,0.360556261,0.0000585,0.0000758,0.771023898,0.441280025,pos,ns,0.937361509,1810013L24Rik,1810013L24Rik_Exon,16,8842988,8843037,8842988,8842989,50,-,CGAAGTTTTGATATTGGAATTCAGATTGGCTATCAGCGACGCAATAAGGA,"Exon (1810013L24Rik-201/1810013L24Rik, exon 3 of 4)",16,8830100,8858922,28823,1,1810013L24Rik-201,12888,1810013L24Rik-201;1810013L24Rik-202,1810013L24Rik;1810013L24Rik,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,18,19,69053,ENSMUSG00000022507,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26743,cg20371748,-0.00000416,0.00000269,-1.547538448,0.122753702,loss,ns,0.00000551,0.00000457,1.20536105,0.228983225,pos,ns,0.000279159,0.001338327,0.20858832,0.834906615,pos,ns,0.078362098,-0.000017,0.000046,-0.369251176,0.7121926,neg,ns,0.932443089,Huwe1,Huwe1_threeUTR,X,151934832,151934881,151934832,151934833,50,-,CGAGACAAGATTGGCGTCTGTGTTGTGGAGGTTTCAAATAAAGAGCACTC,3' UTR,20,151803327,151935417,132091,1,Huwe1-201,131505,Huwe1-201;Huwe1-202,Huwe1;Huwe1,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,28,59026,ENSMUSG00000025261,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4260,cg08088969,0.00000978,0.00000375,2.610725055,0.009474134,gain,ns,0.00000767,0.00000637,1.205267166,0.229019403,pos,ns,0.003433573,0.00186477,1.841284543,0.066535196,pos,ns,1.176948562,0.00000413,0.0000641,0.064392616,0.948699112,pos,ns,0.015557681,Rfx3,Rfx3_fiveUTR,19,28011093,28011142,28011093,28011094,50,+,CGCCAGGACTACGGTGACTATGGCGCTTGATTCACAAGGCAACGGTTGCT,Promoter (<=1kb),19,27768139,28011140,243002,2,Rfx3-208,0,Rfx3-201;Rfx3-208;Rfx3-204;Rfx3-205;Rfx3-207,Rfx3;Rfx3;Rfx3;Rfx3;Rfx3,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,15,19726,ENSMUSG00000040929,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
18143,cg07657482,0.000035,0.00000517,6.774618724,6.28E-11,gain,yes,-0.0000106,0.00000879,-1.205207862,0.229042257,neg,ns,0.005822892,0.002574945,2.261365801,0.024429318,pos,ns,1.612088661,-0.000152658,0.0000886,-1.723935454,0.085716451,neg,ns,0.070147162,Hsd17b12,Hsd17b12_Exon,2,94241399,94241448,94241399,94241400,50,-,CGGCTATTGAGTTATGTACAGCAAGCCCAGACCGCAAAAAGATTCGCGAA,"Exon (Mir129b-201/Mir129b-201, exon 1 of 1)",2,94032689,94157964,125276,2,Hsd17b12-201,-83484,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,19,56348,ENSMUSG00000027195,mapped to different genes,2,94241115,94241769,655,*,655,63,0.630534351,0.978307255,0.096183206,7.48E-47,CpGisland,TRUE,U3,Pr-B
19200,cg08007722,-4.94E-09,0.000002,-0.002471736,0.998029432,loss,ns,0.00000409,0.0000034,1.205082395,0.229090614,pos,ns,0.000778499,0.000994914,0.78247872,0.434530578,pos,ns,0.361979657,0.0000119,0.0000342,0.349123467,0.72723364,pos,ns,0.061454662,Nr1d1,Nr1d1_fiveUTR,11,98775325,98775374,98775325,98775326,50,+,CGCGGCACTGGAGCAGGTACCATGTGATCCCAGGGAGCGCCTCGTGCCCC,Promoter (<=1kb),11,98767932,98775333,7402,2,Nr1d1-201,0,Nr1d1-201;Nr1d1-202,Nr1d1;Nr1d1,0;-4899,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,9,217166,ENSMUSG00000020889,conserved gene but different region,11,98775184,98775428,245,*,245,18,0.624489796,0.760869565,0.073469388,1.20E-11,CpGisland,TRUE,U6,En-Sp
8584,cg05124812,-0.00000112,0.00000195,-0.572737435,0.567237649,loss,ns,0.00000399,0.00000331,1.204972686,0.229132904,pos,ns,0.001317916,0.000969787,1.358974671,0.175142497,pos,ns,0.756608463,-0.0000638,0.0000334,-1.912225244,0.056768815,neg,ns,0.94816051,Snrnp70,Snrnp70_Exon,7,45383184,45383233,45383232,45383233,50,-,GCTGCAGTGACAATAAGAACAGTCAATTAATACGGCGGCCCCTGGACACG,"Exon (Snrnp70-216/Snrnp70, exon 8 of 10)",7,45376453,45395742,19290,2,Snrnp70-201,12509,Snrnp70-201;Snrnp70-207;Snrnp70-216;Snrnp70-215;Snrnp70-214;Snrnp70-204;Snrnp70-209;Snrnp70-213;Snrnp70-206;Snrnp70-205;Snrnp70-217;Snrnp70-203;Snrnp70-202;Snrnp70-212;Snrnp70-211,Snrnp70;Snrnp70;Snrnp70;Snrnp70;Snrnp70;Snrnp70;Snrnp70;Snrnp70;Snrnp70;Snrnp70;Snrnp70;Snrnp70;Snrnp70;Snrnp70;Snrnp70,0;0;0;0;0;0;-1867;0;11566;4537;11939;11961;11486;12476;9545,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,8,20637,ENSMUSG00000063511,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17607,cg25087429,-0.00000374,0.00000202,-1.853882089,0.06470579,loss,ns,0.00000413,0.00000342,1.204840567,0.22918384,pos,ns,0.002348878,0.001003049,2.341738329,0.019827109,pos,ns,1.702740598,-0.0000584,0.0000345,-1.692113087,0.091629231,neg,ns,0.947030814,Elavl2,Elavl2_threeUTR,4,91251183,91251232,91251231,91251232,50,-,TAGCATTGAGTGGGTCAGCATGAAAACTCGCTTATTCACTTTAGCACGCG,3' UTR,4,91250763,91372034,121272,2,Elavl2-204,120802,Elavl2-204;Elavl2-201;Elavl2-207;Elavl2-208;Elavl2-202;Elavl2-209;Elavl2-210;Elavl2-206;Elavl2-203;Elavl2-205,Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,31,15569,ENSMUSG00000008489,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10747,cg12084629,-0.0000287,0.00000487,-5.883915689,1.04E-08,loss,yes,0.00000998,0.00000828,1.20467138,0.229249078,pos,ns,-0.006206604,0.002426235,-2.558121368,0.01099916,neg,ns,1.958640471,0.00000755,0.0000834,0.090498547,0.927949493,pos,ns,0.885292836,Thtpa,Thtpa_threeUTR,14,55097741,55097790,55097741,55097742,50,+,CGCTCGTGTTTATAGGATTTCCACTTAGCCGTGATCAGTAGTTAAGCACA,3' UTR,14,55094784,55098986,4203,1,Thtpa-201,2957,Ap1g2-209;Ap1g2-207;Ap1g2-203;Ap1g2-202;Ap1g2-201;Ap1g2-211;Ap1g2-204;Ap1g2-206;Ap1g2-210;Thtpa-201,Ap1g2;Ap1g2;Ap1g2;Ap1g2;Ap1g2;Ap1g2;Ap1g2;Ap1g2;Ap1g2;Thtpa,0;1598;0;0;0;0;0;6720;7101;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,4,105663,ENSMUSG00000045691,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
834,cg01352953,-0.00000377,0.00000235,-1.608048037,0.108842603,loss,ns,0.0000048,0.00000399,1.20462713,0.229266143,pos,ns,0.002057543,0.001167943,1.761680915,0.079108894,pos,ns,1.101774688,-0.0000939,0.0000402,-2.337621066,0.020042927,neg,ns,0.946736984,1810013L24Rik,1810013L24Rik_threeUTR,16,8856301,8856350,8856301,8856302,50,-,CGTTCCAAGGCTAAAAGTGACCTTAACTGTATTTATTCTCAAAGGGAAAG,3' UTR,16,8830100,8858922,28823,1,1810013L24Rik-201,26201,1810013L24Rik-201,1810013L24Rik,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,19,69053,ENSMUSG00000022507,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12337,cg03904814,-0.00000326,0.00000986,-0.33082092,0.741003248,loss,ns,-0.0000202,0.0000168,-1.204505676,0.229312986,neg,ns,-0.013881072,0.00490866,-2.82787377,0.004990804,neg,ns,2.301829516,0.000293121,0.000168808,1.73641074,0.083484691,pos,ns,0.768052459,Fign,Fign_threeUTR,2,63978287,63978336,63978335,63978336,50,-,CACTTGACAGCAACTAAATCTCGAGAACAGCAGAATGGAATCAACACACG,3' UTR,2,63971507,64098012,126506,2,Fign-203,119676,Fign-203;Fign-201;Fign-202;Fign-204,Fign;Fign;Fign;Fign,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,14,84,60344,ENSMUSG00000075324,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4691,cg14424836,-0.00000356,0.00000157,-2.275510692,0.023557546,loss,ns,0.0000032,0.00000266,1.204364703,0.229367366,pos,ns,-0.001286269,0.000779325,-1.650490748,0.099855335,neg,ns,1.000628728,0.000000727,0.0000268,0.027113124,0.978386953,pos,ns,0.961219838,Zer1,Zer1_Exon,2,30110310,30110359,30110358,30110359,50,+,AGGCTCAGCACCTCCCGAGTCAGCTTGAACTTGTAGTAGCTGGAGAGGCG,"Exon (Zer1-201/Zer1, exon 5 of 16)",2,30097283,30124454,27172,2,Zer1-201,14095,Zer1-201;Zer1-202;Zer1-209;Zer1-204;Zer1-205;Zer1-203;Zer1-206,Zer1;Zer1;Zer1;Zer1;Zer1;Zer1;Zer1,0;0;0;0;0;-2668;-1768,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,227693,ENSMUSG00000039686,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23535,cg05151568,0.0000586,0.000006,9.767540776,8.02E-20,gain,yes,-0.0000123,0.0000102,-1.204253469,0.229410281,neg,ns,0.000456849,0.002985117,0.15304209,0.878464651,pos,ns,0.056275709,0.000205065,0.000102658,1.997551692,0.046638902,pos,ns,0.11747406,Sp8,Sp8_Promoter,12,118840632,118840681,118840680,118840681,50,+,GTGATAGTCAGCTAATTGCTCTGGCAGGTAATTAGAAGCGGTTTACAACG,Promoter (5-6kb),12,118846329,118852576,6248,1,Sp8-201,-5648,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,27,29,320145,ENSMUSG00000048562,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
13589,cg19435191,0.000000954,0.00000864,0.110517872,0.912070191,gain,ns,0.0000177,0.0000147,1.204049429,0.229489015,pos,ns,0.002569428,0.004297953,0.597825889,0.550392583,pos,ns,0.259327427,-0.000245239,0.000147806,-1.659188965,0.098089024,neg,ns,0.56418342,Gm9192,Gm9192_Intergenic_downstream,14,71462785,71462834,71462833,71462834,50,+,CTGAGAAGCGGCAGAAAATTGGCAAGGCTTAATAAACCTCATGCCTGACG,Distal Intergenic,14,71819567,71820551,985,2,Gm9192-201,357717,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,3,668477,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16537,cg09535856,0.0000017,0.00000221,0.772591894,0.440352575,gain,ns,-0.00000451,0.00000375,-1.204035952,0.229494217,neg,ns,-0.001580157,0.001097917,-1.439231376,0.151093927,neg,ns,0.820752992,0.0000338,0.0000378,0.896204957,0.370838706,pos,ns,0.927784723,Camkmt,Camkmt_Intron,17,85393569,85393618,85393617,85393618,50,+,CCAGGGCCTCCAACTGCTGGGTCAGAGAACCGTCAACAGCATCAGCTGCG,"Intron (Camkmt-201/Camkmt, intron 5 of 10)",17,85090552,85458588,368037,1,Camkmt-201,303017,Camkmt-201,Camkmt,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,41,44,73582,ENSMUSG00000071037,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7137,cg21245531,-0.0000374,0.00000484,-7.718322896,1.63E-13,loss,yes,0.00000991,0.00000823,1.203923045,0.229537794,pos,ns,-0.003607629,0.002410427,-1.496676266,0.135494925,neg,ns,0.868076971,0.000173654,0.0000829,2.094882649,0.036992752,pos,ns,0.923023526,Nedd9,Nedd9_Intron,13,41371686,41371735,41371734,41371735,50,-,CAAAGTGCTACATTTGATTTGTGGAAATACTTTAGCACATTTTTCCATCG,"Intron (Nedd9-201/Nedd9, intron 2 of 7)",13,41309581,41487293,177713,2,Nedd9-201,115558,Nedd9-201;Nedd9-205,Nedd9;Nedd9,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,18003,ENSMUSG00000021365,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13149,cg17290588,0.0000934,0.000015,6.231062787,1.51E-09,gain,yes,-0.0000306,0.0000255,-1.203923002,0.229537811,neg,ns,-0.014596665,0.007456574,-1.957556623,0.051179017,neg,ns,1.290908064,0.000095,0.000256431,0.37047356,0.71128268,pos,ns,0.516676795,Tcf4,Tcf4_Intron,18,69575530,69575579,69575530,69575531,50,+,CGCAATTTTTTTTAAACAGACAGGAAAGCATTCACATGAGGAAACAGATT,"Intron (Tcf4-201/Tcf4, intron 9 of 20)",18,69344146,69684343,340198,1,Tcf4-201,231384,Tcf4-201;Tcf4-207;Tcf4-240;Tcf4-254;Tcf4-246;Tcf4-206;Tcf4-202;Tcf4-257;Tcf4-232;Tcf4-248;Tcf4-231;Tcf4-205;Tcf4-253;Tcf4-238;Tcf4-249;Tcf4-219;Tcf4-227;Tcf4-250;Tcf4-229;Tcf4-260;Tcf4-226;Tcf4-216;Tcf4-256;Tcf4-230;Tcf4-221;Tcf4-234;Tcf4-258;Tcf4-217;Tcf4-247;Tcf4-252;Tcf4-218;Tcf4-243;Tcf4-237;Tcf4-239;Tcf4-262;Tcf4-223;Tcf4-212,Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,42,66,21413,ENSMUSG00000053477,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7323,cg22234802,-0.00000113,0.00000218,-0.518174603,0.604706077,loss,ns,-0.00000445,0.0000037,-1.203786035,0.229590682,neg,ns,-0.002435548,0.001082694,-2.249526649,0.025180448,neg,ns,1.598936541,0.0000685,0.0000372,1.839948549,0.066731694,pos,ns,0.931611866,Rbm27,Rbm27_Exon,18,42300444,42300493,42300492,42300493,50,+,AATCATAGCTCTTCCAATTCTTTTGGTCGAAACCTACCACCAAAGAGGCG,"Exon (Rbm27-201/Rbm27, exon 6 of 20)",18,42275353,42341542,66190,1,Rbm27-201,25091,Rbm27-201;Rbm27-202;Rbm27-203;Rbm27-204;Rbm27-205,Rbm27;Rbm27;Rbm27;Rbm27;Rbm27,0;0;0;2201;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,10,225432,ENSMUSG00000024491,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9555,cg24533228,-0.0000674,0.0000129,-5.24585436,0.000000289,loss,yes,0.0000263,0.0000218,1.203610264,0.229658546,pos,ns,-0.010129428,0.00639817,-1.583175775,0.114401033,neg,ns,0.941570053,0.000312758,0.000220033,1.421418315,0.15620038,pos,ns,0.880909053,Plppr1,Plppr1_Exon,4,49282249,49282298,49282297,49282298,50,-,TTTTCAGCTTGTCATCATGGCTGGGACAGTGCTGCTTGCCTACTACTTCG,"Exon (Plppr1-201/Plppr1, exon 3 of 8)",4,49059282,49340259,280978,1,Plppr1-201,222967,Plppr1-201;Plppr1-203,Plppr1;Plppr1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,272031,ENSMUSG00000063446,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
656,cg01063908,-0.0000782,0.00000996,-7.852727865,6.71E-14,loss,yes,0.0000204,0.0000169,1.203606613,0.229659956,pos,ns,-0.00571992,0.004958839,-1.153479658,0.249602123,neg,ns,0.602751725,-0.00000731,0.000170534,-0.042869269,0.965833345,neg,ns,0.569478943,Gm11794,Gm11794_Intron,4,7567913,7567962,7567961,7567962,50,+,TATTATCACTGTTGCTATGGCAACCTGGTTGCAATGGCAATATCTCCACG,"Intron (8430436N08Rik-201/8430436N08Rik-201, intron 2 of 2)",4,7763264,7763500,237,2,Gm11794-201,195538,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,5,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19303,cg25817406,0.000000196,0.00000214,0.091570282,0.927098606,gain,ns,0.00000437,0.00000363,1.203595905,0.22966409,pos,ns,0.003223669,0.00106319,3.032073193,0.00263383,pos,ns,2.579412317,-0.000106523,0.0000366,-2.913395615,0.003835098,neg,ns,0.949838713,Foxp1,Foxp1_Exon,6,98952695,98952744,98952695,98952696,50,-,CGATATTGGACTTCTTTGCAAAAGAAAACCTGCTGTGTATGAATTCAAAA,"Exon (Foxp1-213/Foxp1, exon 5 of 5)",6,98925338,99266515,341178,2,Foxp1-206,313771,Foxp1-206;Foxp1-204;Foxp1-220;Foxp1-230;Foxp1-225;Foxp1-201;Foxp1-205;Foxp1-207;Foxp1-208;Foxp1-226;Foxp1-228;Foxp1-221;Foxp1-222;Foxp1-210;Foxp1-213,Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,87,108655,ENSMUSG00000030067,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5275,cg08192897,-0.00000699,0.00000412,-1.696380586,0.090817681,loss,ns,-0.00000843,0.000007,-1.203482957,0.229707706,neg,ns,-0.007526427,0.002051915,-3.668001024,0.000287626,neg,ns,3.541171109,0.000128879,0.0000706,1.8263773,0.068755098,pos,ns,0.871871839,Ranbp17,Ranbp17_threeUTR,11,33297370,33297419,33297418,33297419,50,+,TCTTTGTGTTCAGTGCAAAGGCAATCCCTCGAAGATCTCTTGCCAGCCCG,3' UTR,11,33211795,33513746,301952,2,Ranbp17-202,216327,Ranbp17-202;Ranbp17-206;Ranbp17-203,Ranbp17;Ranbp17;Ranbp17,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,31,66011,ENSMUSG00000040594,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15013,cg08779401,-0.00000284,0.00000522,-0.545311,0.585931766,loss,ns,0.0000107,0.00000886,1.203462776,0.2297155,pos,ns,0.003826288,0.002595869,1.473990817,0.141498799,pos,ns,0.849247246,-0.00016194,0.0000893,-1.814007362,0.070643272,neg,ns,0.866133337,Ntrk3,Ntrk3_Intron,7,78486732,78486781,78486780,78486781,50,+,TGAACTTTAATGAAGTCAAAATGCTTTCTCTAATCAAATCTCAACTGACG,"Intron (Ntrk3-201/Ntrk3, intron 3 of 16)",7,78175959,78578408,402450,2,Ntrk3-201,91627,Ntrk3-201;Ntrk3-206;Ntrk3-205;Ntrk3-202;Ntrk3-204;Ntrk3-213,Ntrk3;Ntrk3;Ntrk3;Ntrk3;Ntrk3;Ntrk3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,15,18213,ENSMUSG00000059146,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17503,cg22365906,-0.00000738,0.00000361,-2.045087668,0.04169029,loss,ns,0.00000738,0.00000613,1.203446007,0.229721976,pos,ns,0.001805768,0.0017971,1.004823297,0.315765615,pos,ns,0.500635163,-0.0000836,0.0000618,-1.353130271,0.176999952,neg,ns,0.497280825,Anks1b,Anks1b_fiveUTR,10,90576713,90576762,90576713,90576714,50,-,CGTGCATTGCTCATTGTGGAGTACTCCAACAATCACATAGAACGCAGACC,Promoter (<=1kb),10,90576718,90971664,394947,1,Anks1b-216,0,Anks1b-233;Anks1b-222;Anks1b-203;Anks1b-214;Anks1b-215;Anks1b-208;Anks1b-210;Anks1b-221;Anks1b-219;Anks1b-213;Anks1b-216;Anks1b-224;Anks1b-206;Anks1b-207;Anks1b-209;Anks1b-231;Anks1b-218;Anks1b-217;Anks1b-201,Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,9,14,77531,ENSMUSG00000058589,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18203,cg15725174,-0.000000106,0.00000136,-0.077619283,0.938180977,loss,ns,0.00000279,0.00000232,1.203293173,0.229781007,pos,ns,0.00066084,0.000678346,0.974193371,0.330720089,pos,ns,0.480539424,-0.0000244,0.0000233,-1.045628976,0.296546994,neg,ns,0.965733194,Ap3b1,Ap3b1_Exon,13,94471694,94471743,94471742,94471743,50,+,TACATATTAAATCTCGGCAAGTATGATCAAAACTACGACATCAGAGACCG,"Exon (Ap3b1-201/Ap3b1, exon 16 of 27)",13,94358960,94566317,207358,1,Ap3b1-201,112734,Ap3b1-201;Ap3b1-205,Ap3b1;Ap3b1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,55,11774,ENSMUSG00000021686,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22682,cg12870104,0.00000552,0.00000285,1.940295734,0.053250313,gain,ns,0.00000582,0.00000483,1.20327113,0.229789522,pos,ns,0.003076032,0.001416094,2.172195057,0.030598553,pos,ns,1.51429911,-0.0000763,0.0000487,-1.567447757,0.118030229,neg,ns,0.069497243,Maf,Maf_Exon,8,115705871,115705920,115705919,115705920,50,+,GATCTCCTGCTTGAGGTGGTCGACTTGCTGCAGCAGCTGGTTCTTCTCCG,"Exon (Maf-201/Maf, exon 1 of 3)",8,115682942,115707096,24155,2,Maf-201,1176,Maf-201;Maf-202,Maf;Maf,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,23,17132,ENSMUSG00000055435,conserved gene and region,8,115705919,115706789,871,*,871,113,0.732491389,0.967968135,0.129735936,6.29E-100,CpGisland,TRUE,U1,Pr-A
14279,cg06293906,0.0000657,0.00000944,6.956386375,2.08E-11,gain,yes,-0.0000193,0.000016,-1.20302029,0.229886433,neg,ns,0.013507691,0.004700167,2.873874798,0.004334844,pos,ns,2.363026569,-0.000632147,0.000161638,-3.910874264,0.000113025,neg,ns,0.110955904,Smg6,Smg6_Intron,11,75047249,75047298,75047249,75047250,50,+,CGAATGAGGATAGGAAAATAGAACCAGTGCCAAGCCAGAGTCTCTTTTTC,"Intron (Smg6-201/Smg6, intron 12 of 18)",11,74925823,75164448,238626,1,Smg6-201,121426,Smg6-201;Smg6-202;Smg6-204,Smg6;Smg6;Smg6,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,34,103677,ENSMUSG00000038290,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
11290,cg17609931,0.0000617,0.00000541,11.40704417,2.11E-25,gain,yes,0.0000111,0.00000919,1.202708782,0.230006824,pos,ns,0.010495674,0.002692485,3.898137192,0.000118842,pos,ns,3.925031152,-0.000117023,0.0000926,-1.263828481,0.207241123,neg,ns,0.1008163,Hand2,Hand2_Intergenic_downstream,8,57328610,57328659,57328658,57328659,50,-,TCTTTATCTCCGCTATTAGGGACATCTGGGAGTGATTAGTGCCGCACCCG,Distal Intergenic,8,57320983,57324633,3651,1,Hand2-201,7676,Hand2-201,Hand2,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,9,15111,ENSMUSG00000038193,mapped to different genes,8,57328608,57328867,260,*,260,26,0.626923077,1.022383545,0.1,4.14E-20,CpGisland,TRUE,U3,Pr-B
9785,cg06725982,0.0000141,0.00000645,2.19122468,0.029179495,gain,ns,-0.0000132,0.000011,-1.202660116,0.230025636,neg,ns,0.001491741,0.003211116,0.464555226,0.642576101,pos,ns,0.192075431,-0.0000233,0.00011043,-0.211356459,0.832748007,neg,ns,0.881891961,Gm48777,Gm48777_Intron,12,50873607,50873656,50873607,50873608,50,+,CGCCAAAGCTGTGGGTGCTGATAGCATTATTGTTTAATCTCTCTGAAGAA,"Intron (Gm48779-201/Gm48779-201, intron 6 of 8)",12,50895099,50895471,373,2,Gm48777-201,21815,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,10,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17191,cg22503821,-0.0000136,0.00000304,-4.463126221,0.0000113,loss,ns,-0.00000622,0.00000517,-1.202576399,0.230058,neg,ns,-0.000705492,0.001514838,-0.465721003,0.641742247,neg,ns,0.192639369,-0.0000131,0.0000521,-0.250629395,0.802266682,neg,ns,0.917349219,Gm6625,Gm6625_Intergenic_downstream,8,89135227,89135276,89135275,89135276,50,-,TGGTAATTAAACCCAGTAAGTACAAACATACTGTAATTATCATGTAACCG,Distal Intergenic,8,89146787,89147058,272,2,Gm6625-201,11831,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,7,625801,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3291,cg24940350,-0.00000104,0.00000223,-0.464108251,0.642895932,loss,ns,0.00000457,0.0000038,1.202570417,0.230060313,pos,ns,0.003512994,0.0011122,3.158598726,0.001741531,pos,ns,2.75906886,-0.000116505,0.0000382,-3.046015766,0.002518124,neg,ns,0.957279112,Ahsa2,Ahsa2_threeUTR,11,23489578,23489627,23489578,23489579,50,-,CGCTGTGGTTCTTATTATCAAAATTAAGTTTACTTGTATACGGAACAACC,3' UTR,11,23487882,23497930,10049,2,Ahsa2-202,8303,Ahsa2-202;Ahsa2-201;Ahsa2-205;Ahsa2-204;Ahsa2-203;Ahsa2-208;Ahsa2-207;Ahsa2-206;Usp34-208;Usp34-205;Usp34-202;Usp34-201,Ahsa2;Ahsa2;Ahsa2;Ahsa2;Ahsa2;Ahsa2;Ahsa2;Ahsa2;Usp34;Usp34;Usp34;Usp34,0;0;0;0;1797;1450;8278;8268;0;0;0;2773,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,2,268390,ENSMUSG00000020288,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14288,cg02102645,0.0000952,0.00000775,12.27850765,1.65E-28,gain,yes,-0.0000158,0.0000132,-1.202542742,0.230071013,neg,ns,0.018859064,0.003857749,4.88861817,0.00000163,pos,ns,5.787156631,-0.000296543,0.000132668,-2.235233009,0.026114003,neg,ns,0.173590096,Gsx2,Gsx2_Promoter,5,75072050,75072099,75072050,75072051,50,-,CGGCTAACAAAACCCAGCTTTGAGATCATTCATCGCTTTGGAAACTAATA,Promoter (3-4kb),5,75075601,75077893,2293,1,Gsx2-201,-3551,Gsx2-201;Gsx2-202,Gsx2;Gsx2,-3502;-3503,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,5,10,14843,ENSMUSG00000035946,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
16443,cg26400217,-0.0000032,0.00000119,-2.690791971,0.007514854,loss,ns,0.00000243,0.00000202,1.202373433,0.230136478,pos,ns,0.000781688,0.000592565,1.319159543,0.188089323,pos,ns,0.725635856,-0.00000646,0.0000204,-0.317068569,0.751405003,neg,ns,0.967605716,Ric8b,Ric8b_Intron,10,85008551,85008600,85008551,85008552,50,-,CGGAACTATTATGCAGTACTCAATTAGAGGGAGGTGAATAGGTCTCTAAC,"Intron (Ric8b-201/Ric8b, intron 9 of 9)",10,84917616,85016447,98832,1,Ric8b-201,90935,Ric8b-201;Ric8b-202;Ric8b-205;Ric8b-204,Ric8b;Ric8b;Ric8b;Ric8b,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,14,237422,ENSMUSG00000035620,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
300,cg04460656,-0.0000206,0.00000779,-2.648095063,0.008508856,loss,ns,-0.0000159,0.0000132,-1.202318865,0.230157581,neg,ns,0.027280521,0.003879175,7.032556476,1.30E-11,pos,yes,10.88589441,-0.000795981,0.000133405,-5.966670141,6.61E-09,neg,yes,0.718817541,U2af2,U2af2_fiveUTR,7,5068737,5068786,5068785,5068786,50,+,ATATTGTGGGGCTGAGATCCCTCGTAGCAACAAAAAGTTTGCTACCATCG,5' UTR,7,5062143,5079938,17796,1,U2af2-201,6594,U2af2-201;U2af2-209;U2af2-203;U2af2-207;U2af2-208;U2af2-205;U2af2-204;U2af2-202;U2af2-206,U2af2;U2af2;U2af2;U2af2;U2af2;U2af2;U2af2;U2af2;U2af2,0;0;6462;6454;6445;6433;0;0;0,TRUE,FALSE,FALSE,TRUE,TRUE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,4,22185,ENSMUSG00000030435,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9951,cg00416783,0.0000364,0.0000101,3.597184295,0.000374242,gain,ns,-0.0000207,0.0000172,-1.202283083,0.230171419,neg,ns,0.001311858,0.005042389,0.260166009,0.794908438,pos,ns,0.099682893,-0.000360303,0.000173407,-2.077781497,0.038552249,neg,ns,0.572114421,Skap2,Skap2_Intergenic_downstream,6,51736165,51736214,51736165,51736166,50,+,CGTTAAATCAGCAGGCATGTCAGTTGGCACTTCTGGTTACAGACCATTTT,Distal Intergenic,6,51859104,51871929,12826,2,Skap2-207,135715,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,19,54353,ENSMUSG00000059182,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15493,cg26036986,0.00000871,0.00000242,3.59760026,0.000373668,gain,ns,-0.00000494,0.00000411,-1.202118932,0.23023491,neg,ns,0.001610947,0.001204502,1.337437516,0.182060304,pos,ns,0.739784737,-0.0000422,0.0000414,-1.018426149,0.309269629,neg,ns,0.017904365,Ncam2,Ncam2_fiveUTR,16,81200913,81200962,81200961,81200962,50,+,CATGAGCCTCCTCCTCTCCTTCTACCTGCTGGGGTTGCTTGTCAGTAGCG,Promoter (<=1kb),16,81200697,81597805,397109,1,Ncam2-201,216,Ncam2-201;Ncam2-202;Ncam2-203,Ncam2;Ncam2;Ncam2,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,1,17968,ENSMUSG00000022762,conserved gene but different region,16,81200410,81200981,572,*,572,66,0.713286713,0.907172894,0.115384615,9.25E-55,CpGisland,TRUE,U3,Pr-B
1016,cg21256026,-0.0000741,0.0000108,-6.894045727,3.04E-11,loss,yes,0.000022,0.0000183,1.202034268,0.230267662,pos,ns,-0.009168664,0.00535273,-1.712894922,0.08773173,neg,ns,1.056843309,0.000291079,0.00018408,1.581265574,0.114837041,pos,ns,0.804746953,Socs1,Socs1_Intergenic_downstream,16,10772296,10772345,10772296,10772297,50,+,CGAGACCAGGCCACAAGAAAGAGGTTTCAACAAGCGTTATCGTTTCCTGG,Distal Intergenic,16,10782240,10785536,3297,2,Socs1-202,13191,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,12703,ENSMUSG00000038037,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6940,cg11065059,-8.33E-08,0.00000221,-0.037700984,0.969950358,loss,ns,0.00000451,0.00000375,1.202033797,0.230267844,pos,ns,0.003669136,0.001099624,3.336719284,0.000950881,pos,ns,3.021873645,-0.000083,0.0000378,-2.195572678,0.028863366,neg,ns,0.061072157,Tmem178b,Tmem178b_fiveUTR,6,39871412,39871461,39871460,39871461,50,-,AAGAGATGAGGCTCACGTTGCACGGATGACATCACTAGCTTTTGGCTGCG,Promoter (<=1kb),6,39871461,40245772,374312,1,Tmem178b-204,0,Tmem178b-204;Tmem178b-203,Tmem178b;Tmem178b,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,7,434008,ENSMUSG00000057716,conserved gene but different region,6,39871427,39871987,561,*,561,47,0.663101604,0.766482558,0.083778966,3.58E-32,CpGisland,TRUE,U3,Pr-B
7705,cg14100627,0.0000172,0.0000105,1.647551791,0.100457866,gain,ns,0.0000214,0.0000178,1.201955187,0.230298257,pos,ns,0.015853873,0.005207343,3.04452271,0.002530287,pos,ns,2.596830136,-0.000297066,0.00017908,-1.658844599,0.098158473,neg,ns,0.542211577,Arhgap15,Arhgap15_Intron,2,43787283,43787332,43787283,43787284,50,-,CGTTACCTTGTCATTTCTCTGCATGGATCAAGAAGAGATGAGCTGAAAAT,"Intron (Arhgap15-203/Arhgap15, intron 2 of 14)",2,43748824,44395953,647130,1,Arhgap15-203,38459,Arhgap15-203;Arhgap15-202;Arhgap15-205;Arhgap15-201,Arhgap15;Arhgap15;Arhgap15;Arhgap15,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,72,78,76117,ENSMUSG00000049744,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5764,cg08670828,-0.00000273,0.000018,-0.151727522,0.879500543,loss,ns,0.0000368,0.0000306,1.201913807,0.230314267,pos,ns,-0.002984104,0.008962738,-0.332945569,0.739400424,neg,ns,0.131120305,0.000158248,0.000308228,0.513412753,0.608028334,pos,ns,0.256866279,Sox2,Sox2_Intron,3,34662010,34662059,34662058,34662059,50,+,TTTTTTCTGAACAACAATGTAAATCACAATCGCTTTATTATTTAATAACG,"Intron (Sox2ot-203/Sox2ot-203, intron 3 of 3)",3,34650405,34652461,2057,1,Sox2-201,11605,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,34,62,20674,ENSMUSG00000074637,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
3477,cg20675981,-0.00000728,0.00000373,-1.949620566,0.052122765,loss,ns,-0.00000762,0.00000634,-1.201911004,0.230315351,neg,ns,-0.002410732,0.001858261,-1.297305594,0.195490674,neg,ns,0.708873955,0.0000293,0.0000639,0.457948987,0.647309918,pos,ns,0.930295469,Bcl11a,Bcl11a_Exon,11,24163647,24163696,24163647,24163648,50,+,CGCTGTCCCCAGGCCGGCCCAGCCCTATGCAAAGGTTACTGCAACCATTC,"Exon (Bcl11a-201/Bcl11a, exon 4 of 5)",11,24078056,24173194,95139,1,Bcl11a-201,85591,Bcl11a-201;Bcl11a-203;Bcl11a-202;Bcl11a-204;Bcl11a-206,Bcl11a;Bcl11a;Bcl11a;Bcl11a;Bcl11a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,51,98,14025,ENSMUSG00000000861,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5296,cg00319727,0.000111749,0.0000151,7.41252295,1.19E-12,gain,yes,-0.0000308,0.0000256,-1.201887445,0.230324467,neg,ns,0.030950526,0.007503362,4.124887705,0.0000477,pos,ns,4.321528259,-0.000849463,0.00025804,-3.291983592,0.001109724,neg,ns,0.374275987,Atxn7l1,Atxn7l1_Intron,12,33345023,33345072,33345071,33345072,50,+,TCGAAATGTTTGCATGCCACTCTCTGCACACGGCAGGGTGTGGAACCTCG,"Intron (Atxn7l1-212/Atxn7l1, intron 6 of 12)",12,33147754,33373030,225277,1,Atxn7l1-212,197269,Atxn7l1-212;Atxn7l1-204;Atxn7l1-202;Atxn7l1-207;Atxn7l1-213;Atxn7l1-205,Atxn7l1;Atxn7l1;Atxn7l1;Atxn7l1;Atxn7l1;Atxn7l1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,24,380753,ENSMUSG00000020564,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
10368,cg21271896,0.000076,0.0000105,7.26511634,3.04E-12,gain,yes,-0.0000214,0.0000178,-1.201872552,0.23033023,neg,ns,0.002417394,0.005209256,0.464057428,0.642932302,pos,ns,0.191834754,-0.000239041,0.000179146,-1.334337178,0.183072684,neg,ns,0.090703775,Npas3,Npas3_Exon,12,53248696,53248745,53248696,53248697,50,+,CGGCCAACGGCACCCCGCAGAACGTCCAGGGCATCACCTCCTACCAGCAG,Promoter (<=1kb),12,53248157,54069532,821376,1,Npas3-204,539,Npas3-204;Npas3-201;Npas3-202;Npas3-203,Npas3;Npas3;Npas3;Npas3,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,13,103,27386,ENSMUSG00000021010,conserved gene and region,12,53248329,53248788,460,*,460,57,0.732608696,0.94025676,0.123913044,2.30E-49,CpGisland,TRUE,U3,Pr-B
17882,cg15149363,-0.00000194,0.00000465,-0.417106844,0.676888957,loss,ns,-0.00000949,0.0000079,-1.201856445,0.230336462,neg,ns,0.003439715,0.002313041,1.487096395,0.13800574,pos,ns,0.860102848,-0.000095,0.0000795,-1.193716192,0.233501689,neg,ns,0.945970206,Irx5,Irx5_Intron,8,92335337,92335386,92335337,92335338,50,+,CGAAAATAGAAATTTGTGTCCTAAGTGCTGTTACATTACTAATGCTAAAT,"Intron (Crnde-202/Crnde-202, intron 3 of 3)",8,92357625,92376286,18662,1,Irx5-202,-22239,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,30,54352,ENSMUSG00000031737,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17948,cg00760643,-0.0000152,0.00000867,-1.755337679,0.080189276,loss,ns,-0.0000177,0.0000147,-1.201853845,0.230337468,neg,ns,-0.019458439,0.004317543,-4.506831162,0.00000934,neg,ns,5.02974711,0.000547517,0.00014848,3.687481811,0.000267341,pos,ns,0.184307905,Rab30,Rab30_Promoter,7,92742389,92742438,92742437,92742438,50,+,CGCCTTTTCTGCTGATTTGAGGTGACAGTGTCCTTTAATGGTGCACTCCG,Promoter (<=1kb),7,92741603,92844535,102933,1,Rab30-201,786,Rab30-201;Rab30-204,Rab30;Rab30,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,1,1,75985,ENSMUSG00000030643,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
9311,cg22407576,-0.0000019,0.00000916,-0.206898377,0.836225056,loss,ns,0.0000187,0.0000156,1.201849897,0.230338996,pos,ns,-0.002727479,0.004560827,-0.598022889,0.550261297,neg,ns,0.259431032,-0.000162339,0.000156846,-1.03502135,0.301465661,neg,ns,0.762076035,Gm47236,Gm47236_Intron,9,48059937,48059986,48059985,48059986,50,+,ATCTGTTTTTATATTGCTTTCAGCACAAGATAAGTGGCTCCCATACAGCG,"Intron (A730065G17Rik-201/A730065G17Rik-201, intron 3 of 3)",9,48000353,48000798,446,2,Gm47236-201,-59139,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9806,cg22123640,0.0000226,0.00000443,5.107932547,0.00000057,gain,yes,-0.00000905,0.00000753,-1.201688995,0.230401263,neg,ns,-0.001420741,0.002206948,-0.643758128,0.52020826,neg,ns,0.283822757,0.000125449,0.0000759,1.652892959,0.099364999,pos,ns,0.076898391,Sim1,Sim1_Intron,10,50901891,50901940,50901939,50901940,50,+,ATCTACTTCGCCTCATTTGGTTACTAATTGGTTTCTTGTTTTATAAATCG,"Intron (Sim1-201/Sim1, intron 1 of 10)",10,50895651,50989152,93502,1,Sim1-201,6240,Sim1-202;Sim1-201,Sim1;Sim1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,8,20464,ENSMUSG00000019913,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
27284,cg13142119,0.00000109,0.00000472,0.230859075,0.817576571,gain,ns,0.00000964,0.00000802,1.201664158,0.230410875,pos,ns,0.005429562,0.002351019,2.309450323,0.021575614,pos,ns,1.666036833,-0.000232406,0.0000809,-2.874488594,0.004326649,neg,ns,0.897666312,Prrx1,Prrx1_threeUTR,1,163248347,163248396,163248395,163248396,50,+,CCTGTGCAGGGCTATTGTTGGCACATGTGGCAGAATAAGTAGCCATGGCG,3' UTR,1,163245119,163313672,68554,2,Prrx1-202,65276,Prrx1-202;Prrx1-201;Prrx1-205;Prrx1-204,Prrx1;Prrx1;Prrx1;Prrx1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,11,18933,ENSMUSG00000026586,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13201,cg08999225,-0.0000321,0.00000768,-4.182804992,0.0000375,loss,ns,0.0000157,0.000013,1.201411584,0.230508645,pos,ns,0.001498074,0.003820417,0.392123215,0.695236619,pos,ns,0.157867361,-0.000303968,0.000131384,-2.313590906,0.021344098,neg,ns,0.885849822,Ikzf2,Ikzf2_Intergenic_upstream,1,69745593,69745642,69745593,69745594,50,+,CGAGGGCATGATTTCTAAATGGACCAAGTTATTTTTGTGAACTCTACATA,Distal Intergenic,1,69538582,69687245,148664,2,Ikzf2-202,-58348,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,14,22779,ENSMUSG00000025997,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3989,cg18636161,-0.00000673,0.00000291,-2.313643211,0.021341187,loss,ns,0.00000594,0.00000495,1.201361219,0.230528144,pos,ns,0.001478096,0.00144876,1.020249206,0.308405828,pos,ns,0.510877424,-0.000118935,0.0000498,-2.387168507,0.017577821,neg,ns,0.935127566,Gm7847,Gm7847_Intergenic_upstream,18,26253132,26253181,26253132,26253133,50,+,CGGAAATGCAGCCCTGTGAAGCTTTAAGAAAAACACATTATTTTGTTTTA,Distal Intergenic,18,25823581,25824357,777,2,Gm7847-201,-428775,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,22,665916,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2875,cg27556193,0.0000865,0.00000493,17.53265702,2.69E-48,gain,yes,-0.0000101,0.00000838,-1.201325893,0.230541821,neg,ns,0.004417682,0.002455858,1.798834635,0.073017415,pos,ns,1.136573545,0.0000298,0.0000845,0.352960398,0.724358007,pos,ns,0.08904409,Otx1,Otx1_fiveUTR,11,22001601,22001650,22001649,22001650,50,+,TGATGAAGATTGATCACCTTTCTACTGCCCTCCCCGGGTATGTGAACGCG,Promoter (<=1kb),11,21994764,22001615,6852,2,Otx1-201,0,Ehbp1-201;Ehbp1-202;Ehbp1-207;Otx1-201;Otx1-203;Otx1-202,Ehbp1;Ehbp1;Ehbp1;Otx1;Otx1;Otx1,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,13,18423,ENSMUSG00000005917,conserved gene but different region,11,22001635,22002065,431,*,431,50,0.728538283,0.874416717,0.116009281,9.57E-42,CpGisland,TRUE,U3,Pr-B
26864,cg26617601,0.000000479,0.00000164,0.292858997,0.769825862,gain,ns,0.00000334,0.00000278,1.201179357,0.230598564,pos,ns,0.001585247,0.000814083,1.947279604,0.052403928,pos,ns,1.280636156,-0.0000145,0.000028,-0.517884512,0.604908234,neg,ns,0.030073657,Nol4l,Nol4l_Exon,2,153529442,153529491,153529442,153529443,50,+,CGAGCCCGTCTTGACCGGCACATACACCACTTGGCCCATCTTGGGTTCCC,Promoter (<=1kb),2,153407462,153529971,122510,2,Nol4l-201,480,Nol4l-201,Nol4l,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,14,329540,ENSMUSG00000061411,conserved gene and region,2,153528543,153530628,2086,*,2086,233,0.761744966,0.771121688,0.111697028,6.66E-188,CpGisland,TRUE,NA,NRS
907,cg09807427,0.0000239,0.00000437,5.480726924,8.79E-08,gain,yes,-0.00000891,0.00000742,-1.20073119,0.230772167,neg,ns,0.008483611,0.002173438,3.903314216,0.000116444,pos,ns,3.933882155,-0.000300945,0.0000747,-4.026326704,0.0000713,neg,ns,0.096066256,Fam155a,Fam155a_Exon,8,9770822,9770871,9770822,9770823,50,+,CGGGTCAGCTTGGCCTCGGCGCAGAACCACAAGTGATCAGAGAGCAGGAC,Promoter (<=1kb),8,9205902,9771161,565260,2,Fam155a-201,290,Fam155a-201;Fam155a-206;Fam155a-203,Fam155a;Fam155a;Fam155a,0;0;-718,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,4,270028,ENSMUSG00000079157,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
5504,cg14305686,0.0000694,0.0000087,7.98463588,2.78E-14,gain,yes,0.0000177,0.0000148,1.200633361,0.230810075,pos,ns,0.005830482,0.004327693,1.347249232,0.178883898,pos,ns,0.74742875,0.0000631,0.000148829,0.423761566,0.672033588,pos,ns,0.707053286,Pbx3,Pbx3_Intergenic_downstream,2,34129906,34129955,34129954,34129955,50,-,AGCCGTTTAATTAACATAATTAGGCCTCATTATTTTCCTTGCATCTATCG,Distal Intergenic,2,34172873,34288852,115980,2,Pbx3-210,158946,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,82,18516,ENSMUSG00000038718,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16023,cg03295030,-0.00000405,0.0000032,-1.267822411,0.205812792,loss,ns,0.00000652,0.00000543,1.200260611,0.230954553,pos,ns,0.002572806,0.0015911,1.616997855,0.106895833,pos,ns,0.971039225,-0.000189868,0.0000547,-3.469942379,0.000594354,neg,ns,0.939146177,Epha5,Epha5_Exon,5,84233848,84233897,84233848,84233849,50,+,CGGAATCCATTCCAGAAAGACACTAGTTTCATTAACATTTGAGATGGCAT,"Exon (Epha5-205/Epha5, exon 5 of 18)",5,84054761,84416921,362161,2,Epha5-201,183024,Epha5-201;Epha5-205;Epha5-206;Epha5-202;Epha5-203;Epha5-204;Epha5-209;Epha5-208;Epha5-210,Epha5;Epha5;Epha5;Epha5;Epha5;Epha5;Epha5;Epha5;Epha5,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,9,13839,ENSMUSG00000029245,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20605,cg00013247,-0.00000644,0.00000372,-1.732092018,0.084251874,loss,ns,0.00000758,0.00000632,1.200156413,0.230994951,pos,ns,0.004466603,0.001850261,2.414039355,0.016355954,pos,ns,1.786324128,-0.000142117,0.0000636,-2.233473403,0.02623098,neg,ns,0.887431919,Gm8748,Gm8748_Intergenic_upstream,8,103896769,103896818,103896817,103896818,50,+,TACATTCTTTTGAATAAAACATCTATTCTTGATGCCAGCAGCAAGCTTCG,Distal Intergenic,8,104071149,104071735,587,1,Gm8748-201,-174331,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,6,667656,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19544,cg12350982,-0.00000996,0.00000501,-1.988254984,0.047662669,loss,ns,0.0000102,0.00000851,1.200031177,0.231043513,pos,ns,0.00109392,0.002493212,0.438759249,0.661141622,pos,ns,0.179705501,-0.000178002,0.0000857,-2.076038733,0.038714284,neg,ns,0.085418997,Slco2b1,Slco2b1_Intergenic_downstream,7,99648758,99648807,99648758,99648759,50,-,CGCTCTGGTTATCTACTGGGCTTTAATCAAATTGAGAAGAGAGGAAATCC,Distal Intergenic,7,99659857,99664932,5076,2,Slco2b1-206,16174,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,101488,ENSMUSG00000030737,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10430,cg18476882,-0.0000192,0.00000743,-2.581307407,0.010301837,loss,ns,0.0000151,0.0000126,1.199955752,0.231072764,pos,ns,0.00202222,0.00369755,0.54690811,0.584835324,pos,ns,0.232966404,-0.00012115,0.000127158,-0.952748307,0.341459884,neg,ns,0.565614972,Septin8,Septin8_Intron,11,53520914,53520963,53520914,53520915,50,+,CGATAACGAATTGGTTCTGGGGCTAAATAAGGGAGCCAGGACTTATGTAA,"Intron (Septin8-205/Septin8, intron 1 of 2)",11,53519257,53534616,15360,1,Septin8-205,1657,Septin8-205;Septin8-201;Septin8-204;Septin8-202;Septin8-203;Septin8-207,Septin8;Septin8;Septin8;Septin8;Septin8;Septin8,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,9,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
13446,cg05168534,-0.00000136,0.00000084,-1.623410362,0.105518106,loss,ns,0.00000171,0.00000143,1.199951608,0.231074371,pos,ns,0.0000248,0.000418063,0.059259819,0.952783347,pos,ns,0.021005842,0.00000935,0.0000144,0.650667383,0.515743181,pos,ns,0.977747253,Sltm,Sltm_Exon,9,70584029,70584078,70584029,70584030,50,+,CGCCTAGAAATTGAAAGGCAAAAACTAGAGAGAGAGAGAATGGAACGCGA,"Exon (Sltm-206/Sltm, exon 15 of 21)",9,70542754,70592234,49481,1,Sltm-206,41275,Sltm-206;Sltm-203;Sltm-201;Sltm-208;Sltm-204;Sltm-207,Sltm;Sltm;Sltm;Sltm;Sltm;Sltm,0;0;0;0;8621;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,11,66660,ENSMUSG00000032212,mapped to different genes,9,70583933,70584030,98,*,98,10,0.489795918,2.058823529,0.102040816,5.13E-08,CpGisland,TRUE,U10,Tr-S
5231,cg19169822,-0.00000493,0.00000576,-0.855957809,0.392682233,loss,ns,0.0000117,0.00000979,1.199898257,0.231095062,pos,ns,-0.001899578,0.002867325,-0.662491349,0.508148606,neg,ns,0.294009261,0.0000199,0.0000986,0.201769209,0.840229491,pos,ns,0.756594584,Chchd3,Chchd3_Intergenic_upstream,6,33137107,33137156,33137107,33137108,50,+,CGGCTGGCTGGGCTGGTGATTTTGTAATTACGAAGCAGATTTTTTAGACA,Distal Intergenic,6,32792217,33060260,268044,2,Chchd3-201,-76847,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,5,66075,ENSMUSG00000053768,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11420,cg14141896,0.0000171,0.00000664,2.578251706,0.010391417,gain,ns,0.0000135,0.0000113,1.199776795,0.231142175,pos,ns,0.011151962,0.003303,3.376313247,0.000828216,pos,ns,3.081856463,-0.000289724,0.00011359,-2.550615574,0.011233762,neg,ns,0.171892012,Ccdc33,Ccdc33_Intron,9,58061274,58061323,58061322,58061323,50,+,GCTCATTAGGTATCTAACAAAGTGAGTCCCAAGAAATCTGCTTCCAATCG,"Intron (Ccdc33-201/Ccdc33, intron 10 of 18)",9,58028677,58102297,73621,2,Ccdc33-201,40974,Ccdc33-201;Ccdc33-203;Ccdc33-210;Ccdc33-204;Stra6-210,Ccdc33;Ccdc33;Ccdc33;Ccdc33;Stra6,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,8,382077,ENSMUSG00000037716,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25867,cg21578463,0.0000269,0.00000607,4.430650088,0.0000131,gain,ns,0.0000124,0.0000103,1.199633699,0.231197689,pos,ns,0.010700875,0.003018885,3.544644705,0.000453741,pos,ns,3.343191609,-0.000291748,0.000103819,-2.810152276,0.0052667,neg,ns,0.126964075,Pax7,Pax7_Intron,4,139825966,139826015,139826014,139826015,50,-,TTCATTACCAGCTCTAATAAGTCTTAACATTATTAAATGCCAAGCGGACG,"Intron (Pax7-201/Pax7, intron 4 of 8)",4,139737062,139833528,96467,2,Pax7-201,7513,Pax7-201;Pax7-202,Pax7;Pax7,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,27,18509,ENSMUSG00000028736,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
3456,cg01374899,-0.0000135,0.0000056,-2.412149309,0.016439379,loss,ns,0.0000114,0.00000952,1.199543934,0.231232517,pos,ns,0.000945312,0.002788601,0.338991423,0.734845702,pos,ns,0.133803842,-0.000111966,0.0000959,-1.16752801,0.24389442,neg,ns,0.885791172,Bcl11a,Bcl11a_Intron,11,24095914,24095963,24095914,24095915,50,-,CGGTGCACATCAGGCTGGCCTGTCAGCCTGCTGAAGGAGAAAAAAAAGGT,"Intron (Bcl11a-201/Bcl11a, intron 2 of 4)",11,24078056,24173194,95139,1,Bcl11a-201,17858,Bcl11a-201;Bcl11a-203;Bcl11a-202;Bcl11a-204,Bcl11a;Bcl11a;Bcl11a;Bcl11a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,98,14025,ENSMUSG00000000861,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24892,cg13385016,0.0000275,0.0000217,1.269764011,0.205121028,gain,ns,0.0000442,0.0000368,1.199472434,0.231260262,pos,ns,0.018684863,0.010792212,1.731328383,0.084388122,pos,ns,1.07371868,-0.000462819,0.000371143,-1.247009951,0.213335171,neg,ns,0.321412788,Pitx2,Pitx2_threeUTR,3,129219349,129219398,129219349,129219350,50,-,CGCTTGCGAGCAAGGGAGTGTATATACTAAATGCCACACTGTATGTTTCT,3' UTR,3,129199878,129219590,19713,1,Pitx2-207,19471,Pitx2-207;Pitx2-201;Pitx2-203;Pitx2-204;Pitx2-208;Pitx2-202;Pitx2-206,Pitx2;Pitx2;Pitx2;Pitx2;Pitx2;Pitx2;Pitx2,0;0;0;0;0;0;5074,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,7,24,18741,ENSMUSG00000028023,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
15982,cg02854502,0.0000307,0.0000148,2.075368846,0.038776722,gain,ns,-0.0000302,0.0000252,-1.199411049,0.231284083,neg,ns,0.05533064,0.007370747,7.506788693,6.48E-13,pos,yes,12.18813674,-0.001596682,0.000253479,-6.299061284,1.02E-09,neg,yes,0.667684427,Tshz1,Tshz1_Intron,18,84082816,84082865,84082864,84082865,50,+,AATCAATTATTTGACACTAAGATACTCTCAAGAAAAACTCATCAGTTACG,"Intron (Tshz1-201/Tshz1, intron 1 of 1)",18,84011627,84086404,74778,2,Tshz1-201,3539,Tshz1-201;Tshz1-202;Tshz1-203;Tshz1-204,Tshz1;Tshz1;Tshz1;Tshz1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,18,110796,ENSMUSG00000046982,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7357,cg24151358,0.0000511,0.00000545,9.367073701,1.59E-18,gain,yes,-0.0000111,0.00000926,-1.19930907,0.231323662,neg,ns,0.004741185,0.002713816,1.747054569,0.081618163,pos,ns,1.088213186,-0.0000136,0.0000933,-0.145288436,0.884577564,neg,ns,0.10482975,Pou4f3,Pou4f3_Promoter,18,42394788,42394837,42394836,42394837,50,+,TCTAAGGCACATTTTTTGACAGGCACTAGCTTCATGTTTTTTTCATGTCG,Promoter (<=1kb),18,42394539,42397249,2711,1,Pou4f3-201,249,Pou4f3-201;Pou4f3-202,Pou4f3;Pou4f3,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,4,17,18998,ENSMUSG00000024497,conserved gene and region,18,42394836,42394895,60,*,60,8,0.683333333,1.379310345,0.133333333,0.000000221,CpGisland,TRUE,U13,Hc-P
9979,cg20823597,-0.0000225,0.00000614,-3.674183384,0.000281037,loss,ns,-0.0000125,0.0000104,-1.199247417,0.231347592,neg,ns,-0.004423175,0.003053864,-1.448386122,0.148519764,neg,ns,0.828215749,-0.000214219,0.000105022,-2.039755104,0.042222201,neg,ns,0.901522622,Hectd1,Hectd1_Exon,12,51769054,51769103,51769102,51769103,50,+,TTACAATTTCTGATCTCCGTTCCGTTTTGGTCGAACCCAAGCTGATGTCG,"Exon (Hectd1-201/Hectd1, exon 25 of 43)",12,51743722,51829536,85815,2,Hectd1-201,60433,Hectd1-201;Hectd1-202;Hectd1-204,Hectd1;Hectd1;Hectd1,0;0;-3823,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,19,19,207304,ENSMUSG00000035247,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6216,cg18243046,-0.00000225,0.00000148,-1.522786513,0.128831535,loss,ns,0.00000301,0.00000251,1.198959801,0.231459251,pos,ns,0.001438458,0.00073428,1.959004083,0.051008445,pos,ns,1.292357913,-0.0000375,0.0000253,-1.485494109,0.138429183,neg,ns,0.0601919,Pcgf5,Pcgf5_Exon,19,36348229,36348278,36348277,36348278,50,-,TGTGTCCAATCAGGGAGTGCGGGCTGTGCCCCGAGCCGGGCAGCAATGCG,Promoter (<=1kb),19,36348309,36460970,112662,1,Pcgf5-211,-80,Pcgf5-211;Pcgf5-205,Pcgf5;Pcgf5,0;-259,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,76073,ENSMUSG00000024805,conserved gene but different region,19,36348072,36349309,1238,*,1238,161,0.739095315,0.954588123,0.130048465,2.72E-142,CpGisland,TRUE,U2,Pr-W
26496,cg20849614,0.00000931,0.00000881,1.05728309,0.291205606,gain,ns,-0.0000179,0.000015,-1.198898,0.231483249,neg,ns,0.008196167,0.004383915,1.869599901,0.062481941,pos,ns,1.204245488,-0.0000925,0.000150762,-0.613465646,0.540018344,neg,ns,0.311243217,Casz1,Casz1_Intron,4,148809024,148809073,148809024,148809025,50,-,CGACCGGGCAGGTTTATTGTCTTTCTGAAGCAATAGCTCACATAAGTAAT,"Intron (Casz1-201/Casz1, intron 1 of 15)",4,148804429,148945129,140701,1,Casz1-201,4595,Casz1-201;Casz1-202;Casz1-203,Casz1;Casz1;Casz1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,94,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
27004,cg08758366,-0.00000492,0.00000152,-3.236046574,0.001343011,loss,ns,0.00000309,0.00000258,1.198712064,0.231555459,pos,ns,0.001814504,0.000756306,2.399166876,0.017022632,pos,ns,1.768973286,-0.0000454,0.000026,-1.746702267,0.081679394,neg,ns,0.962815502,Cpne1,Cpne1_fiveUTR,2,156098292,156098341,156098292,156098293,50,+,CGAATGTCCATGGTCCCCGCCACAATTGGGAGACCTTGCAAACGGATGAC,5' UTR,2,156071842,156111935,40094,2,Cpne1-217,13594,Cpne1-217;Cpne1-209;Cpne1-202;Cpne1-203;Cpne1-201;Cpne1-210;Cpne1-206;Cpne1-212;Cpne1-208;Cpne1-205;Cpne1-213;Cpne1-216;Gm28036-201;Gm28036-202;Gm28036-203;Gm28036-204;Gm28036-205;Gm28036-208;Gm28036-207;Gm28036-206;Rbm12-201;Rbm12-202;Rbm12-204;Rbm12-203;Rbm12-205,Cpne1;Cpne1;Cpne1;Cpne1;Cpne1;Cpne1;Cpne1;Cpne1;Cpne1;Cpne1;Cpne1;Cpne1;Gm28036;Gm28036;Gm28036;Gm28036;Gm28036;Gm28036;Gm28036;Gm28036;Rbm12;Rbm12;Rbm12;Rbm12;Rbm12,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;-1364;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,TRUE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,9,266692,ENSMUSG00000074643,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25092,cg10870239,0.0000166,0.00000542,3.062528777,0.002387139,gain,ns,-0.000011,0.00000921,-1.198688756,0.231564512,neg,ns,-0.003905925,0.002698814,-1.447274581,0.148830504,neg,ns,0.827308048,0.000124482,0.0000928,1.341227059,0.180828545,pos,ns,0.065231821,Abraxas2,Abraxas2_Exon,7,132859278,132859327,132859278,132859279,50,+,CGGGCTACACCTTCAGTGCTGTGTGTTTCCACAGCGCCAACAGCAACGCG,Promoter (<=1kb),7,132859307,132878614,19308,1,Abraxas2-204,0,Abraxas2-201;Abraxas2-208;Abraxas2-207;Abraxas2-202;Abraxas2-206;Abraxas2-203;Abraxas2-204;Fgfr2-217,Abraxas2;Abraxas2;Abraxas2;Abraxas2;Abraxas2;Abraxas2;Abraxas2;Fgfr2,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,109359,ENSMUSG00000030965,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
27957,cg07982366,-0.00000535,0.00000485,-1.101913661,0.271353985,loss,ns,0.00000988,0.00000824,1.198515831,0.231631686,pos,ns,0.00337489,0.002414553,1.397728922,0.163193869,pos,ns,0.787296161,-0.000225267,0.000083,-2.7128701,0.007043034,neg,ns,0.868943474,Syt14,Syt14_Exon,1,192898853,192898902,192898853,192898854,50,+,CGGATTATATAAACCTGTCCACCTATCAAGTGTTTTAGACAACAGAACAG,"Exon (Syt14-201/Syt14, exon 8 of 9)",1,192891233,193035775,144543,2,Syt14-203,136873,Syt14-203;Syt14-205;Syt14-204;Syt14-201,Syt14;Syt14;Syt14;Syt14,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,329324,ENSMUSG00000016200,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3163,cg14241460,0.0000241,0.0000042,5.724020801,2.46E-08,gain,yes,-0.00000856,0.00000714,-1.19849057,0.2316415,neg,ns,0.00288618,0.002092592,1.379237021,0.168815889,pos,ns,0.77258668,-0.00012831,0.000072,-1.782974095,0.075568919,neg,ns,0.065650051,Nol4,Nol4_Promoter,18,23041790,23041839,23041790,23041791,50,+,CGGGCAGAATTGTCCCATTTAGGGATCCCGGGGGCAGTGCGCATGCTGCA,Promoter (<=1kb),18,22693634,23041653,348020,2,Nol4-204,-137,Nol4-202;Nol4-204;Nol4-208;Nol4-206;Nol4-209,Nol4;Nol4;Nol4;Nol4;Nol4,0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,5,21,319211,ENSMUSG00000041923,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
23118,cg01441091,0.000128402,0.0000121,10.58297849,1.51E-22,gain,yes,-0.0000247,0.0000206,-1.198469387,0.23164973,neg,ns,0.019709202,0.006038671,3.263831298,0.001221973,pos,ns,2.91293832,-0.000529721,0.000207669,-2.550791991,0.011228197,neg,ns,0.335601248,Rnf220,Rnf220_Intron,4,117312635,117312684,117312635,117312636,50,+,CGGGCGCTGCCTCAGCCCTTGCACTGATAACGAGGAAATGGGACTGACAA,"Intron (Rnf220-201/Rnf220, intron 2 of 14)",4,117271463,117497052,225590,2,Rnf220-201,184368,Rnf220-201;Rnf220-202;Rnf220-207,Rnf220;Rnf220;Rnf220,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,4,117312571,117312666,96,*,96,10,0.677083333,0.909090909,0.104166667,4.18E-08,CpGisland,TRUE,NA,NRS
19270,cg26256970,0.0000808,0.00000893,9.046784918,1.66E-17,gain,yes,0.0000182,0.0000152,1.198437289,0.231662201,pos,ns,0.013218997,0.004446891,2.972638021,0.003183903,pos,ns,2.497040114,-0.000219312,0.000152928,-1.434082564,0.152556621,neg,ns,0.225553492,Ophn1,Ophn1_fiveUTR,X,98890975,98891024,98891023,98891024,50,+,CTACGGAAACTGGGGAGCAGTCAGCGCCCTAGGACTCCAGCTGGAAAGCG,Promoter (<=1kb),20,98554277,98890985,336709,2,Ophn1-201,0,Ophn1-201;Ophn1-202;Ophn1-203;Ophn1-207;Ophn1-205;Ophn1-210;Ophn1-204;Ophn1-209,Ophn1;Ophn1;Ophn1;Ophn1;Ophn1;Ophn1;Ophn1;Ophn1,0;-194;0;0;0;-366;-591;-350,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,3,94190,ENSMUSG00000031214,conserved gene but different region,X,98890705,98891193,489,*,489,32,0.613496933,0.698571429,0.065439673,1.01E-18,CpGisland,TRUE,NA,NRS
8341,cg11149600,-0.0000283,0.0000125,-2.266477531,0.024111085,loss,ns,0.0000254,0.0000212,1.198416176,0.231670404,pos,ns,0.010114996,0.006220869,1.625977933,0.104970449,pos,ns,0.978932946,-0.000447501,0.000213935,-2.091758228,0.037273578,neg,ns,0.799071119,Zeb2,Zeb2_Intron,2,45032319,45032368,45032319,45032320,50,-,CGTCCTCTCAGCCTCGACACGCGTCAAGTAAAAGAAAGGTTAAAATTAGA,"Intron (Zeb2-212/Zeb2, intron 3 of 10)",2,44983632,45117395,133764,2,Zeb2-212,85027,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-218;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11663,cg02486590,-0.0000029,0.00000229,-1.264059933,0.207158153,loss,ns,0.00000467,0.0000039,1.198294592,0.231717648,pos,ns,0.002735428,0.001141422,2.396507447,0.017144338,pos,ns,1.765879288,-0.000116394,0.0000393,-2.965196994,0.003259728,neg,ns,0.93872415,Nop58,Nop58_Exon,1,59702857,59702906,59702857,59702858,50,-,CGATGTAGAGAATGGTATGGCTGGCATTTCCCTGAATTAGGAAAAATTAT,"Exon (Nop58-201/Nop58, exon 7 of 13)",1,59684977,59711510,26534,1,Nop58-201,17880,Nop58-201;Nop58-215;Nop58-209;Nop58-213;Nop58-202;Nop58-210;Nop58-212;Nop58-205;Nop58-206;Nop58-207,Nop58;Nop58;Nop58;Nop58;Nop58;Nop58;Nop58;Nop58;Nop58;Nop58,0;0;17803;12678;0;0;0;-1253;-1292;-1803,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,55989,ENSMUSG00000026020,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19791,cg09061197,0.00000227,0.00000318,0.714721696,0.475318896,gain,ns,0.00000647,0.0000054,1.198272914,0.231726073,pos,ns,-0.001741538,0.001581044,-1.101511481,0.271528611,neg,ns,0.566184401,-0.0000679,0.0000544,-1.248892681,0.21264659,neg,ns,0.939610653,Msl2,Msl2_Exon,9,101101887,101101936,101101887,101101888,50,+,CGCAAAGCCTGCTTAGATTGTATATGTCGTGGCTGCCAAAACTCCTATAT,"Exon (Msl2-201/Msl2, exon 2 of 2)",9,101074762,101104800,30039,1,Msl2-201,27125,Msl2-202;Msl2-201;Ppp2r3a-202;Ppp2r3a-201,Msl2;Msl2;Ppp2r3a;Ppp2r3a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,19,77853,ENSMUSG00000066415,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2557,cg23035298,-0.0000225,0.00000701,-3.206755775,0.001482576,loss,ns,-0.0000143,0.0000119,-1.198249159,0.231735304,neg,ns,-0.004924096,0.00349026,-1.410810524,0.159303199,neg,ns,0.797775504,-0.000180305,0.00012003,-1.502171364,0.134070785,neg,ns,0.895013205,Dsg3,Dsg3_Exon,18,20520543,20520592,20520543,20520544,50,-,CGTGAATGGGTGAAATTTGCCAAACCCTGCAGAGAAGGAGAAGATAACTC,"Exon (Dsg3-201/Dsg3, exon 3 of 16)",18,20510274,20543384,33111,1,Dsg3-201,10269,Dsg3-201;Dsg3-202,Dsg3;Dsg3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,13512,ENSMUSG00000056632,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3431,cg25763031,0.00000887,0.00000119,7.430486122,1.06E-12,gain,yes,-0.00000243,0.00000203,-1.198156479,0.231771323,neg,ns,-0.001202489,0.000593914,-2.024686044,0.043756589,neg,ns,1.358956536,0.0000277,0.0000204,1.356058404,0.176067504,pos,ns,0.03668765,Bcl11a,Bcl11a_fiveUTR,11,24078081,24078130,24078081,24078082,50,-,CGTCCGCACTTGAACTTGCAGCTCAGGGGGGCTTTTGCCATTTTTTTCAT,Promoter (<=1kb),11,24078117,24174123,96007,1,Bcl11a-203,0,A830031A19Rik-201;Bcl11a-201;Bcl11a-203;Bcl11a-205;Bcl11a-202;Bcl11a-204,A830031A19Rik;Bcl11a;Bcl11a;Bcl11a;Bcl11a;Bcl11a,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,10,98,14025,ENSMUSG00000000861,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19681,cg21410748,0.0000271,0.00000934,2.90420341,0.003946398,gain,ns,0.000019,0.0000159,1.198151207,0.231773373,pos,ns,-0.004813307,0.004646964,-1.035796075,0.30110459,neg,ns,0.521282624,-0.000186946,0.000159809,-1.169813509,0.242974628,neg,ns,0.785988112,Marveld2,Marveld2_Exon,13,100611572,100611621,100611572,100611573,50,+,CGGCAGAACACTGCATTCACTGGTGTATTAAATAACGGATAGTAGCAGAG,"Exon (Marveld2-201/Marveld2, exon 2 of 7)",13,100595957,100616971,21015,2,Marveld2-201,5350,Marveld2-201;Marveld2-204;Marveld2-202;Marveld2-203,Marveld2;Marveld2;Marveld2;Marveld2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,218518,ENSMUSG00000021636,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18977,cg01550545,-0.0000134,0.00000527,-2.541984117,0.01150906,loss,ns,0.0000107,0.00000896,1.197863844,0.23188508,pos,ns,-0.006422476,0.002625375,-2.446308063,0.014988193,neg,ns,1.824250709,-0.000117866,0.0000903,-1.30547073,0.192700644,neg,ns,0.854155192,Nfia,Nfia_Intron,4,98103038,98103087,98103086,98103087,50,+,ATCATTGTTGAAATATTCCCTTTGAACTGCCGTGTCCACGGGGGTCTCCG,"Intron (Nfia-202/Nfia, intron 10 of 10)",4,97777608,98118871,341264,1,Nfia-202,325430,Nfia-202;Nfia-203;Nfia-205;Nfia-201;Nfia-204,Nfia;Nfia;Nfia;Nfia;Nfia,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,44,18027,ENSMUSG00000028565,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
21256,cg20994225,0.00000591,0.0000102,0.581059325,0.561622677,gain,ns,0.0000207,0.0000173,1.197857064,0.231887716,pos,ns,-0.016672605,0.005058858,-3.295724855,0.00109555,neg,ns,2.960367842,0.000476898,0.000173974,2.741208159,0.006476665,pos,ns,0.852093662,Acss3,Acss3_Exon,10,107004737,107004786,107004785,107004786,50,+,CTGTAAACAAGGCAGCTACTCCATGCTCTGCAAGCACACGGAAATAAGCG,"Exon (Acss3-203/Acss3, exon 8 of 16)",10,106933517,107123583,190067,2,Acss3-203,118797,Acss3-203;Acss3-201,Acss3;Acss3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,380660,ENSMUSG00000035948,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22854,cg16208240,0.00000476,0.00000329,1.445322358,0.14937747,gain,ns,-0.0000067,0.0000056,-1.197769139,0.231921903,neg,ns,0.001078274,0.001639378,0.657733352,0.51119758,pos,ns,0.291411211,-0.0000798,0.0000564,-1.414865536,0.158111605,neg,ns,0.065609129,Sox6,Sox6_Intron,7,116032698,116032747,116032746,116032747,50,-,TACATGACCTCCGGCTACAACTAAGACAGCCGAGGAGGGCACTCCAGTCG,"Intron (Sox6-204/Sox6, intron 1 of 15)",7,115471344,116038744,567401,2,Sox6-204,5997,Sox6-210;Sox6-202;Sox6-204;Sox6-209;Sox6-214;Sox6-208,Sox6;Sox6;Sox6;Sox6;Sox6;Sox6,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,37,57,20679,ENSMUSG00000051910,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9735,cg16801814,-0.000000854,0.00000198,-0.431177604,0.666638913,loss,ns,0.00000403,0.00000337,1.197743863,0.231931732,pos,ns,0.002459157,0.000986211,2.493540548,0.013168691,pos,ns,1.880457396,-0.0000505,0.0000339,-1.488200335,0.137714582,neg,ns,0.926717411,Hnrnph1,Hnrnph1_Exon,11,50383726,50383775,50383726,50383727,50,-,CGGTGGTGCTTACGGTAGCCAAATGCTAGGAGGCATGGGTTTGTGTAAAT,"Exon (Hnrnph1-203/Hnrnph1, exon 11 of 15)",11,50376990,50386528,9539,1,Hnrnph1-203,6736,Hnrnph1-203;Hnrnph1-201;Hnrnph1-205;Hnrnph1-206;Hnrnph1-215;Hnrnph1-204;Hnrnph1-202;Hnrnph1-207;Hnrnph1-208;Hnrnph1-210;Hnrnph1-211;Hnrnph1-213;Hnrnph1-209;Hnrnph1-218;Hnrnph1-216;Hnrnph1-214;Hnrnph1-212;Hnrnph1-217,Hnrnph1;Hnrnph1;Hnrnph1;Hnrnph1;Hnrnph1;Hnrnph1;Hnrnph1;Hnrnph1;Hnrnph1;Hnrnph1;Hnrnph1;Hnrnph1;Hnrnph1;Hnrnph1;Hnrnph1;Hnrnph1;Hnrnph1;Hnrnph1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;-37;-56;-1188,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,59013,ENSMUSG00000007850,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2897,cg14176235,0.00000278,0.00000264,1.052882229,0.293214948,gain,ns,-0.00000537,0.00000448,-1.197648744,0.231968722,neg,ns,-0.00227344,0.001312795,-1.731755356,0.084311919,neg,ns,1.074111026,0.0000624,0.0000451,1.382227358,0.16789698,pos,ns,0.916670539,Ehbp1,Ehbp1_Intron,11,22034747,22034796,22034747,22034748,50,+,CGAGTAAAGATCAGAGCAAGCTCATTAGCATTCTGACAAAATTGGAGTGG,"Intron (Ehbp1-201/Ehbp1, intron 20 of 23)",11,22005828,22285838,280011,2,Ehbp1-201,251042,Ehbp1-201;Ehbp1-202;Ehbp1-207,Ehbp1;Ehbp1;Ehbp1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,34,45,216565,ENSMUSG00000042302,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21492,cg25709794,-0.0000203,0.00000571,-3.550790586,0.000443684,loss,ns,0.0000116,0.0000097,1.19761249,0.231982821,pos,ns,-0.006085189,0.002840343,-2.142413426,0.032938877,neg,ns,1.482291207,0.000184179,0.0000977,1.885549379,0.06029062,pos,ns,0.896381897,Zfhx3,Zfhx3_Intron,8,107960787,107960836,107960787,107960788,50,+,CGGGGGTTAAATTGGAATCCAGACATCAAAGAATTCTTCCACCAGACCCA,"Intron (Zfhx3-204/Zfhx3, intron 1 of 15)",8,107942644,108961630,1018987,1,Zfhx3-204,18143,Zfhx3-204,Zfhx3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,114,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19580,cg06144427,-0.00000461,0.00000228,-2.023951046,0.043832625,loss,ns,0.00000463,0.00000387,1.197595424,0.231989458,pos,ns,0.002600068,0.001132754,2.295351717,0.022380477,pos,ns,1.650130656,-0.0000733,0.000039,-1.882657124,0.06068317,neg,ns,0.94518447,Hnrnpd,Hnrnpd_threeUTR,5,99962064,99962113,99962112,99962113,50,+,TAATGCTGATACAGGATGTTGGAAGAGACCATACCAAACGGCAGCATTCG,3' UTR,5,99955935,99978938,23004,2,Hnrnpd-211,16825,Hnrnpd-211;Hnrnpd-201;Hnrnpd-203;Hnrnpd-202;Hnrnpd-208;Hnrnpd-209;Hnrnpd-204;Hnrnpd-205;Hnrnpd-206;Hnrnpd-210,Hnrnpd;Hnrnpd;Hnrnpd;Hnrnpd;Hnrnpd;Hnrnpd;Hnrnpd;Hnrnpd;Hnrnpd;Hnrnpd,0;0;0;0;0;0;0;0;4274;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,8,11991,ENSMUSG00000000568,conserved gene and region,5,99962102,99962210,109,*,109,11,0.614678899,1.07437276,0.100917431,9.65E-09,CpGisland,TRUE,U10,Tr-S
17679,cg09132314,0.0000444,0.00000524,8.478620139,9.42E-16,gain,yes,0.0000107,0.0000089,1.19758775,0.231992443,pos,ns,0.012090848,0.002608027,4.636012673,0.00000524,pos,ns,5.280555558,-0.000260293,0.0000897,-2.902149077,0.003971671,neg,ns,0.091405194,Elavl2,Elavl2_Promoter,4,91375848,91375897,91375896,91375897,50,+,TATTCTGTATTCCGCTCACTTACAGGTTTTCTGGGTTTGCCAGCGCATCG,Promoter (<=1kb),4,91250763,91376463,125701,2,Elavl2-208,566,Elavl2-204;Elavl2-201;Elavl2-207;Elavl2-208;Elavl2-202;Elavl2-209;Elavl2-203;Elavl2-205;Elavl2-215;Elavl2-212;Elavl2-214;Elavl2-211,Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,4,31,15569,ENSMUSG00000008489,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
21386,cg04671121,-0.0000396,0.0000093,-4.257583115,0.0000274,loss,ns,-0.0000189,0.0000158,-1.197461384,0.232041594,neg,ns,-0.010388391,0.004629744,-2.243836941,0.025548522,neg,ns,1.592634219,0.000199988,0.000159217,1.256075872,0.210034259,pos,ns,0.757354567,Glis1,Glis1_Intron,4,107591205,107591254,107591205,107591206,50,-,CGAGGGCAGATTTATGAACTGAGTTACACAGAAATTATTTAAGGCCCTGG,"Intron (Glis1-201/Glis1, intron 4 of 10)",4,107434719,107635061,200343,1,Glis1-201,156486,Glis1-201;Glis1-202;Glis1-206,Glis1;Glis1;Glis1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,11,230587,ENSMUSG00000034762,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5956,cg15071934,-0.0000011,0.00000357,-0.309215001,0.757365707,loss,ns,-0.00000727,0.00000607,-1.19741972,0.232057801,neg,ns,-0.002994666,0.001778562,-1.683756916,0.093235281,neg,ns,1.030419717,-0.000008,0.0000612,-0.130796402,0.896021207,neg,ns,0.943188703,Slit3,Slit3_Intron,11,35556379,35556428,35556379,35556380,50,-,CGACTGCTATACGTCAGTGAATAAGGCCCCTTGTGAGATCATTATGTTTT,"Intron (Slit3-201/Slit3, intron 6 of 35)",11,35121224,35708507,587284,1,Slit3-201,435155,Slit3-201;Slit3-202,Slit3;Slit3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,21,20564,ENSMUSG00000056427,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14801,cg19888626,0.00015045,0.0000195,7.731355879,1.50E-13,gain,yes,-0.0000396,0.0000331,-1.197172065,0.232154155,neg,ns,0.038724253,0.009685293,3.99825315,0.0000798,pos,ns,4.097870711,-0.000520808,0.000333076,-1.563629794,0.118924761,neg,ns,0.379417143,Myo18a,Myo18a_Intron,11,77830755,77830804,77830755,77830756,50,+,CGTCTTGATATGGAGTTGGTGTTTATTATTTCAAAACCAGATTGTTACCG,"Intron (Myo18a-208/Myo18a, intron 19 of 41)",11,77763246,77865980,102735,1,Myo18a-208,67509,Myo18a-208;Myo18a-209;Myo18a-207;Myo18a-201;Myo18a-203;Myo18a-222;Myo18a-223;Myo18a-211;Myo18a-205;Myo18a-210;Myo18a-224;Myo18a-202;Myo18a-220;Myo18a-221;Myo18a-218,Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a,0;0;0;0;0;0;0;0;0;0;0;0;0;0;6201,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,18,360013,ENSMUSG00000000631,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19460,cg18161408,-0.0000109,0.00000302,-3.606944312,0.000360996,loss,ns,0.00000613,0.00000512,1.197144645,0.232164825,pos,ns,0.000985954,0.001501174,0.656788556,0.511804155,pos,ns,0.290896193,-0.0000698,0.0000516,-1.352403327,0.177232015,neg,ns,0.946847523,Gm12685,Gm12685_Intergenic_downstream,4,99374690,99374739,99374738,99374739,50,+,AACAAGAATTTGTCAACCTGTCCATTTTTCAGCATCTCCCCCTGACCCCG,Distal Intergenic,4,99418498,99418711,214,2,Gm12685-201,43972,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,13,13,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7244,cg21841353,0.0000215,0.00000424,5.069713673,0.000000687,gain,yes,0.00000863,0.00000721,1.197136262,0.232168087,pos,ns,0.003764551,0.002111021,1.78328412,0.075518353,pos,ns,1.12194749,0.00000586,0.0000726,0.080663451,0.935761654,pos,ns,0.048590236,Gm8707,Gm8707_Intron,9,41736034,41736083,41736082,41736083,50,-,CCTTCTTAAGAAGACTTTCCCAGGTCCCTCTTGGCTGTGGTTGAACGACG,"Intron (Gm35835-202/Gm35835-202, intron 2 of 4)",9,41654303,41655282,980,1,Gm8707-201,81780,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,12,667566,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
4678,cg25155468,-0.0000112,0.00000497,-2.249782379,0.025164014,loss,ns,-0.0000101,0.00000844,-1.197107075,0.232179445,neg,ns,0.000256929,0.002472064,0.103933184,0.91728958,pos,ns,0.03749354,-0.0000987,0.000085,-1.161514127,0.246326423,neg,ns,0.565492686,Cacna1d,Cacna1d_threeUTR,14,30096927,30096976,30096975,30096976,50,-,TGGCCAAGCAGAGTGTGTTGAGCATGATGAGGACAAACATCATGTATTCG,3' UTR,14,30039941,30491453,451513,2,Cacna1d-202,394477,Cacna1d-202;Cacna1d-201;Cacna1d-208;Cacna1d-209;Cacna1d-214;Cacna1d-204;Cacna1d-207;Cacna1d-218;Cacna1d-216;Cacna1d-217;Cacna1d-210;Cacna1d-219,Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,13,26,12289,ENSMUSG00000015968,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1553,cg21237997,-0.0000313,0.0000109,-2.871949718,0.004360638,loss,ns,-0.0000221,0.0000185,-1.197057547,0.232198719,neg,ns,-0.013913742,0.005416011,-2.569001772,0.010666846,neg,ns,1.97196396,0.000129979,0.000186256,0.697849059,0.485794682,pos,ns,0.801506707,Zfp521,Zfp521_Intron,18,13692965,13693014,13693013,13693014,50,-,ACTGAAAATTGCAAACCATTAATCCCAGTTATGAACAGTTGTTTTACACG,"Intron (Zfp521-201/Zfp521, intron 7 of 7)",18,13687013,13972787,285775,2,Zfp521-201,279773,Zfp521-201;Zfp521-205;Zfp521-204,Zfp521;Zfp521;Zfp521,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,81,225207,ENSMUSG00000024420,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12154,cg19050854,0.0000148,0.0000035,4.223709049,0.0000316,gain,ns,0.00000711,0.00000594,1.197049174,0.232201978,pos,ns,0.003550603,0.001741132,2.039249141,0.042272968,pos,ns,1.373937256,-0.0000472,0.0000599,-0.788929133,0.430756362,neg,ns,0.058948151,Skor1,Skor1_Exon,9,63140041,63140090,63140089,63140090,50,+,ACTCCCGTCTTACCTCTGACAATTTGCAGCTGTTGCACCATTTCTTCTCG,"Exon (Skor1-203/Skor1, exon 7 of 9)",9,63138170,63147011,8842,2,Skor1-203,6921,Skor1-203;Skor1-202;Skor1-201,Skor1;Skor1;Skor1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,15,207667,ENSMUSG00000022245,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
8922,cg22877608,0.0000707,0.0000103,6.898079799,2.97E-11,gain,yes,-0.0000208,0.0000174,-1.197040749,0.232205257,neg,ns,0.000767605,0.005101965,0.150452738,0.880505282,pos,ns,0.055268034,0.0000335,0.000175456,0.190879024,0.848745321,pos,ns,0.353112333,Otog,Otog_Intergenic_downstream,7,46313654,46313703,46313702,46313703,50,-,ATCCTCTTCCTGTGGAAATCAATAAGGACATTGTGATGGAATGATTCACG,Downstream (2-3kb),7,46295375,46311433,16059,1,Otog-202,18328,Otog-201;Otog-202,Otog;Otog,72667;18279,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,1,1,18419,ENSMUSG00000009487,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16555,cg21001856,0.000015,0.00000517,2.906261427,0.003921226,gain,ns,-0.0000105,0.00000878,-1.197004987,0.232219175,neg,ns,-0.00570373,0.002571628,-2.217944953,0.027283176,neg,ns,1.564105078,0.000312122,0.0000884,3.529270689,0.000479844,pos,ns,0.896036858,Fos,Fos_Intergenic_upstream,12,85436274,85436323,85436274,85436275,50,+,CGCCTGCTCTAATTTTATCCCTGGTTGATGGAGGAGACTAACTGAGCAGC,Distal Intergenic,12,85473890,85477273,3384,1,Fos-201,-37567,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,5,14281,ENSMUSG00000021250,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27243,cg23966182,-0.0000117,0.00000645,-1.809374247,0.071361393,loss,ns,-0.0000131,0.000011,-1.196904967,0.232258105,neg,ns,-0.00723094,0.003208246,-2.253860671,0.024903179,neg,ns,1.603745214,0.0000489,0.000110331,0.443614986,0.657630428,pos,ns,0.844495499,Nhs,Nhs_Exon,X,161841733,161841782,161841733,161841734,50,-,CGTGTTGGCGAAATCAAGAGGCAGCTTCATTTCCCTGGAACTGTGAGGCA,"Exon (Nhs-202/Nhs, exon 7 of 9)",20,161833296,162159730,326435,2,Nhs-202,317948,Nhs-202;Nhs-201,Nhs;Nhs,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,12,195727,ENSMUSG00000059493,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10755,cg09968857,0.0000275,0.00000383,7.1936194,4.77E-12,gain,yes,0.00000778,0.0000065,1.196512358,0.232410962,pos,ns,0.00222014,0.001905572,1.165077473,0.244883359,pos,ns,0.611040726,-0.000212415,0.0000655,-3.241375938,0.001318967,neg,ns,0.105752344,Jph4,Jph4_Exon,14,55115052,55115101,55115052,55115053,50,-,CGCCCAGCCCTTCGCGCTTGCCCTGCTGCCAGTGGCCCTGGTAGCTGTGT,"Exon (Jph4-201/Jph4, exon 2 of 6)",14,55106826,55116935,10110,2,Jph4-201,1834,Jph4-201;Jph4-202;Jph4-203;Jph4-204,Jph4;Jph4;Jph4;Jph4,0;0;-4494;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,11,319984,ENSMUSG00000022208,conserved gene and region,14,55114804,55115549,746,*,746,72,0.71849866,0.747869674,0.096514745,1.44E-53,CpGisland,TRUE,U3,Pr-B
11725,cg12220474,0.0000077,0.00000286,2.694706109,0.007429184,gain,ns,-0.00000581,0.00000486,-1.1964551,0.232433261,neg,ns,0.000134445,0.001422909,0.094486346,0.924783871,pos,ns,0.033959753,0.000015,0.0000489,0.306427365,0.75948498,pos,ns,0.945817247,Fam204a,Fam204a_Intron,19,60242748,60242797,60242748,60242749,50,+,CGTAAATTTGTTTTTATCATCTCCAAGTGGTGTTTGCACAGGCAGCACAA,"Intron (Gm28351-201/Gm28351-201, intron 1 of 1)",19,60199435,60226701,27267,2,Fam204a-205,-16047,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,14,76539,ENSMUSG00000057858,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1191,cg17558214,0.00000143,0.0000021,0.682467022,0.495453328,gain,ns,0.00000426,0.00000356,1.196392291,0.232457723,pos,ns,0.001870701,0.001043633,1.792489654,0.074029509,pos,ns,1.130595128,-0.0000855,0.0000359,-2.381294967,0.017855371,neg,ns,0.959431517,Phf14,Phf14_Exon,6,12006829,12006878,12006829,12006830,50,+,CGAAGCTTCGTTCCTGAGGAAGAAAAACATGAGGTTGGAATAAGTTAAGC,"Exon (Phf14-202/Phf14, exon 15 of 17)",6,11925881,12008013,82133,1,Phf14-202,80948,Phf14-202;Phf14-201;Phf14-203;Phf14-206,Phf14;Phf14;Phf14;Phf14,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,3,75725,ENSMUSG00000029629,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26266,cg23362130,0.000000159,0.00000303,0.05228217,0.958337534,gain,ns,0.00000617,0.00000515,1.196290415,0.232497405,pos,ns,-0.000218361,0.001509808,-0.144628374,0.885098275,neg,ns,0.053008506,0.0000123,0.0000519,0.237839454,0.812162737,pos,ns,0.933405276,Cfap61,Cfap61_Intron,2,145971780,145971829,145971780,145971781,50,+,CGGCTGTAGATTAGAAGGACATCTCCATGTGAACCAAGATGGATGCCAAT,"Intron (Cfap61-204/Cfap61, intron 7 of 15)",2,145934784,146043073,108290,1,Cfap61-204,36996,Cfap61-204;Cfap61-206,Cfap61;Cfap61,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,13,78774,ENSMUSG00000037143,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15712,cg12121116,0.0000862,0.00000837,10.30291682,1.34E-21,gain,yes,-0.000017,0.0000142,-1.196155347,0.232550022,neg,ns,0.015780099,0.004166485,3.787388533,0.000182828,pos,ns,3.737957856,-0.000577194,0.000143285,-4.028288131,0.0000707,neg,ns,0.392778682,Tcf20,Tcf20_Intron,15,82952411,82952460,82952459,82952460,50,+,TGACAAACTGTGTTCAAGCTTCATTAGGGTAATCACGGGCTCCCCTCCCG,"Intron (Tcf20-204/Tcf20, intron 1 of 1)",15,82856793,82963558,106766,2,Tcf20-204,11098,Tcf20-204;Tcf20-203,Tcf20;Tcf20,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,13,21411,ENSMUSG00000041852,mapped to different genes,15,82952318,82952577,260,*,260,19,0.630769231,0.738636364,0.073076923,3.18E-12,CpGisland,TRUE,U13,Hc-P
17107,cg21166265,-0.00000263,0.00000333,-0.791963567,0.428987508,loss,ns,0.00000676,0.00000565,1.195971968,0.232621474,pos,ns,0.002758203,0.00165519,1.66639595,0.096644606,pos,ns,1.014822379,-0.0000872,0.0000569,-1.532402954,0.126442885,neg,ns,0.922869832,Msi2,Msi2_Intron,11,88443520,88443569,88443520,88443521,50,+,CGGCCTGCCAAGCCCCTGGCTTTCACACTCGCTATGCCAGAACATCCACA,"Intron (Msi2-203/Msi2, intron 7 of 13)",11,88339382,88718229,378848,2,Msi2-203,274660,Msi2-203;Msi2-201;Msi2-207,Msi2;Msi2;Msi2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,21,36,76626,ENSMUSG00000069769,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6864,cg10067250,-0.0000619,0.0000146,-4.246822585,0.0000287,loss,ns,0.0000296,0.0000248,1.195957255,0.232627207,pos,ns,-0.009723447,0.007256568,-1.339951215,0.181242551,neg,ns,0.741739834,-0.0000755,0.000249553,-0.302674431,0.762340978,neg,ns,0.774630727,Gm12131,Gm12131_Intergenic_downstream,11,39012684,39012733,39012732,39012733,50,+,CATTTTAACAATGCAATCCCAAACATTTGTTCTCATTAGAATGCAAATCG,Distal Intergenic,11,39727070,39727712,643,2,Gm12131-201,714979,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,4,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25384,cg21963705,0.0000176,0.0000103,1.707639062,0.088704509,gain,ns,0.0000209,0.0000175,1.195792735,0.232691325,pos,ns,0.026352067,0.005127083,5.139777828,0.000000488,pos,ns,6.311710072,-0.001042632,0.00017632,-5.913298122,8.85E-09,neg,yes,0.606909485,Kif21b,Kif21b_Exon,1,136144661,136144710,136144661,136144662,50,-,CGGGAGAGCCCCAGGTCCTGCTGGGGAAGGACAAGGCCTTCACCTATGAC,"Exon (Kif21b-201/Kif21b, exon 2 of 35)",1,136131389,136177998,46610,1,Kif21b-201,13272,Kif21b-201;Kif21b-204;Kif21b-202,Kif21b;Kif21b;Kif21b,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,16565,ENSMUSG00000041642,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18608,cg17199893,0.0000475,0.0000141,3.371238714,0.000843069,gain,ns,0.0000286,0.0000239,1.195770269,0.232700081,pos,ns,0.01374718,0.00701392,1.959985379,0.05089308,pos,ns,1.293341265,-0.000636869,0.000241208,-2.640329246,0.008701851,neg,ns,0.321473061,Hoxb5,Hoxb5_Intergenic_downstream,11,96310702,96310751,96310702,96310703,50,+,CGCTCATATCTCATCAATAATTCATAGAGTCCGGGATCATGCAGAGGTCA,Distal Intergenic,11,96303512,96306120,2609,1,Hoxb5-201,7190,Hoxb5-202;Hoxb5-201,Hoxb5;Hoxb5,0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,34,15413,ENSMUSG00000038700,mapped to different genes,11,96310702,96310865,164,*,164,11,0.609756098,0.721888756,0.067073171,0.000000682,CpGisland,TRUE,NA,NRS
16382,cg12594542,0.0000619,0.0000139,4.471359108,0.0000109,gain,ns,-0.0000281,0.0000235,-1.195720794,0.232719366,neg,ns,0.013863115,0.00689515,2.010560416,0.045237625,pos,ns,1.344500205,-0.000352365,0.000237124,-1.48599596,0.138296449,neg,ns,0.254818566,Nfix,Nfix_Intron,8,84789063,84789112,84789063,84789064,50,+,CGCCTTGGGTTGAGGCCAGGCCGTCCTCAAATAACATTTGAAGTTACTTA,"Intron (Nfix-201/Nfix, intron 1 of 8)",8,84708614,84800140,91527,2,Nfix-201,11028,Nfix-201;Nfix-202;Nfix-205,Nfix;Nfix;Nfix,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,49,18032,ENSMUSG00000001911,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1245,cg00269503,0.0000672,0.0000124,5.423105773,0.000000118,gain,yes,0.0000251,0.000021,1.195468939,0.232817553,pos,ns,0.023253816,0.006163078,3.773084545,0.000193147,pos,ns,3.714113054,-0.00098439,0.000211948,-4.644492732,0.00000504,neg,ns,0.137466265,Bcor,Bcor_fiveUTR,X,12128202,12128251,12128250,12128251,50,-,GATTTAAAGGTTCTCACCGGGAAGCGAGCGAGGCACAGACCTGAGAGCCG,5' UTR,20,12036743,12160355,123613,2,Bcor-201,32104,Bcor-201;Bcor-207;Bcor-205;Bcor-208,Bcor;Bcor;Bcor;Bcor,0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,74,71458,ENSMUSG00000040363,conserved gene and region,X,12127661,12128843,1183,*,1183,110,0.662721894,0.850033967,0.092983939,1.48E-79,CpGisland,TRUE,U3,Pr-B
1162,cg02343252,-0.00000442,0.00000154,-2.867447792,0.004421507,loss,ns,0.00000313,0.00000262,1.195323285,0.23287435,pos,ns,-0.0000753,0.000766622,-0.098172928,0.921858425,neg,ns,0.035335771,0.000000928,0.0000264,0.03521385,0.971931881,pos,ns,0.049954668,Osbp,Osbp_Exon,19,11966260,11966309,11966308,11966309,50,-,GGTTCGTGCTGAGCAACGGGCTCCTGAGCTACTACAGGTAACTGCTTCCG,Promoter (<=1kb),19,11965941,11994112,28172,1,Osbp-201,319,Osbp-201,Osbp,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,6,76303,ENSMUSG00000024687,conserved gene but different region,19,11966253,11966407,155,*,155,13,0.677419355,0.750745157,0.083870968,0.000000003,CpGisland,TRUE,U1,Pr-A
235,cg02667765,0.000000448,0.000000824,0.543232657,0.587360017,gain,ns,-0.00000167,0.0000014,-1.195172596,0.232933122,neg,ns,-0.00089944,0.000410278,-2.192272431,0.029103044,neg,ns,1.536061585,0.0000207,0.0000141,1.470257659,0.142506195,pos,ns,0.987053446,Gm21992,Gm21992_threeUTR,19,4801743,4801792,4801791,4801792,50,-,AGCTGCGACTCTGATAAACGGCGGTAATCAGAGAGCTCGGCTAAACGCCG,3' UTR,19,4742913,4811612,68700,2,Gm21992-203,9820,Gm21992-203;Gm21992-206;Gm21992-204;Gm21992-201;Gm21992-205;Gm21992-202;Rbm14-201;Rbm14-202;Rbm14-203,Gm21992;Gm21992;Gm21992;Gm21992;Gm21992;Gm21992;Rbm14;Rbm14;Rbm14,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,21,48,102902673,ENSMUSG00000096370,mapped to different genes,19,4801605,4801812,208,*,208,24,0.586538462,1.371428571,0.115384615,3.42E-20,CpGisland,TRUE,U10,Tr-S
2493,cg21490229,0.00000546,0.00000662,0.825160012,0.409915264,gain,ns,-0.0000134,0.0000112,-1.195162659,0.232936998,neg,ns,-0.00997251,0.003295299,-3.026283611,0.002683295,neg,ns,2.571331574,0.000426645,0.000113325,3.764793218,0.000199377,pos,ns,0.844950733,Pkhd1,Pkhd1_Intergenic_downstream,1,19983537,19983586,19983585,19983586,50,-,CATTTTAATTTCTTGCCTCTGTGTTTATTGCTTATTTGGCCCCTTGCTCG,Distal Intergenic,1,20374722,20409448,34727,2,Pkhd1-203,425911,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,25,241035,ENSMUSG00000043760,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12356,cg20259401,0.00000574,0.00000237,2.41838858,0.0161654,gain,ns,0.00000482,0.00000403,1.195005356,0.232998361,pos,ns,0.00133793,0.001181534,1.13236734,0.258355131,pos,ns,0.587782909,-0.0000719,0.0000406,-1.76837191,0.077982203,neg,ns,0.010289148,Smad6,Smad6_fiveUTR,9,64020981,64021030,64020981,64020982,50,-,CGCCAAAGTCGCCGCACCAGCCCCGAGCGTTTGGACCTGAACATACGATA,5' UTR,9,63953076,64022059,68984,2,Smad6-201,1029,Smad6-201;Smad6-202;Smad6-203,Smad6;Smad6;Smad6,0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,9,19,17130,ENSMUSG00000036867,conserved gene but different region,9,64020165,64021315,1151,*,1151,140,0.724587315,0.927328392,0.121633362,4.23E-119,CpGisland,TRUE,NA,NRS
82,cg16317742,0.000000329,0.00000189,0.173958808,0.862011378,gain,ns,-0.00000384,0.00000322,-1.194793433,0.233081048,neg,ns,0.001141555,0.000942601,1.211068182,0.226791712,pos,ns,0.644372821,-0.0000586,0.0000324,-1.808992595,0.071420815,neg,ns,0.037917913,Plag1,Plag1_Promoter,4,3937800,3937849,3937800,3937801,50,+,CGGGTCTCTAATGTCTTCCGCTCTCGCTGCTGCCGCTGCCGCTGTCACAA,Promoter (<=1kb),4,3900996,3938382,37387,2,Plag1-201,533,Chchd7-202;Chchd7-206;Chchd7-213;Chchd7-207;Chchd7-208;Chchd7-201;Chchd7-205;Chchd7-214;Chchd7-203;Chchd7-209;Chchd7-210;Chchd7-211;Chchd7-204;Plag1-201;Plag1-202;Plag1-204;Plag1-203,Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Plag1;Plag1;Plag1;Plag1,-1039;-1039;-1041;-1065;-1065;-1065;-1065;-1065;-1071;-1194;-1573;-1651;-3005;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,8,22,56711,ENSMUSG00000003282,conserved gene and region,4,3937683,3937840,158,*,158,13,0.537974684,1.156531532,0.082278481,3.81E-09,CpGisland,TRUE,U1,Pr-A
173,cg12645567,-0.0000018,0.00000164,-1.096212087,0.273836828,loss,ns,0.00000333,0.00000279,1.194737077,0.233103041,pos,ns,0.000665828,0.000816477,0.815488788,0.415418687,pos,ns,0.381513971,0.0000117,0.0000281,0.418113433,0.676153664,pos,ns,0.048277203,Tfap4,Tfap4_Promoter,16,4559135,4559184,4559183,4559184,50,-,TGGCCGGGACTGCTGCAGAACCACGTGGGTCTGTTTGCAATTTACAAACG,Promoter (<=1kb),16,4544661,4559854,15194,2,Tfap4-201,670,Tfap4-201;Tfap4-203,Tfap4;Tfap4,0;-352,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,3,9,83383,ENSMUSG00000005718,conserved gene and region,16,4558598,4559381,784,*,784,66,0.640306122,0.823529412,0.084183674,4.79E-45,CpGisland,TRUE,U1,Pr-A
14680,cg11560032,0.000200303,0.0000187,10.72951585,4.76E-23,gain,yes,-0.0000379,0.0000317,-1.194720948,0.233109335,neg,ns,0.021808808,0.009291464,2.347187412,0.019544618,pos,ns,1.708972823,-0.000613128,0.000319533,-1.918826008,0.055924422,neg,ns,0.05551588,Ctnna2,Ctnna2_Exon,6,77243717,77243766,77243717,77243718,50,+,CGAGGCGCTCAACCTCACCGAGGCGCCCCACAACCTGTCCGGCCTGCTGG,"Exon (Lrrtm1-201/Lrrtm1, exon 2 of 3)",6,76881637,77979699,1098063,2,Ctnna2-204,735933,Ctnna2-204;Ctnna2-205;Ctnna2-202;Ctnna2-201;Lrrtm1-201;Lrrtm1-202;Lrrtm1-203;Lrrtm1-204,Ctnna2;Ctnna2;Ctnna2;Ctnna2;Lrrtm1;Lrrtm1;Lrrtm1;Lrrtm1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,16,24,12386,ENSMUSG00000063063,conserved gene and region,6,77243660,77243918,259,*,259,23,0.633204633,0.885930994,0.088803089,1.29E-16,CpGisland,TRUE,U13,Hc-P
12082,cg20269670,-0.00000203,0.00000215,-0.944408044,0.345696644,loss,ns,-0.00000437,0.00000366,-1.194631882,0.233144097,neg,ns,-0.000237897,0.001071546,-0.22201251,0.824450331,neg,ns,0.083835503,-0.00000577,0.0000369,-0.156528284,0.875718515,neg,ns,0.928656821,Ccar1,Ccar1_Exon,10,62764433,62764482,62764481,62764482,50,+,ACATCCGGGAAAAATAAAACCACTGTCTCCACATGAGCTGGAACTGTACG,"Exon (Ccar1-201/Ccar1, exon 14 of 25)",10,62743928,62792231,48304,2,Ccar1-201,27749,Ccar1-201;Ccar1-211;Ccar1-207;Ccar1-206;Ccar1-212;Ccar1-205;Ccar1-210;Gm48145-201,Ccar1;Ccar1;Ccar1;Ccar1;Ccar1;Ccar1;Ccar1;Gm48145,0;0;-966;0;-4084;0;0;2682,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,10,67500,ENSMUSG00000020074,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23633,cg02103332,-0.0000111,0.00000361,-3.080210855,0.002253851,loss,ns,-0.00000732,0.00000613,-1.194568919,0.233168672,neg,ns,0.001257068,0.001795176,0.700247923,0.484297675,pos,ns,0.314887616,-0.000156775,0.0000617,-2.539439859,0.011591348,neg,ns,0.860448941,Xylb,Xylb_threeUTR,9,119383367,119383416,119383367,119383368,50,+,CGAGCACTAATTGAAGGACAATTCATGGCCAAGAGGATTCACGCAGAAGG,3' UTR,9,119357381,119393320,35940,1,Xylb-201,25986,Xylb-201;Xylb-204;Xylb-205;Xylb-202,Xylb;Xylb;Xylb;Xylb,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,102448,ENSMUSG00000035769,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25037,cg06595108,0.000027,0.00000652,4.138670653,0.0000451,gain,ns,0.0000132,0.0000111,1.194101536,0.233351158,pos,ns,0.0078912,0.003246368,2.430777566,0.015633305,pos,ns,1.805949204,0.0000623,0.000111642,0.558090653,0.577185308,pos,ns,0.646424025,Fgfr2,Fgfr2_Intron,7,131776358,131776407,131776358,131776359,50,-,CGGTGCGGTTCTGTAAATGTTTGATTAGTTCTGAATGGATTACTGTTAGA,"Intron (Fgfr2-217/Fgfr2, intron 2 of 6)",7,130162451,133123350,2960900,2,Fgfr2-217,1346943,Fgfr2-217,Fgfr2,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,58,79,14183,ENSMUSG00000030849,mapped to different genes,7,131776265,131776364,100,*,100,9,0.52,1.435406699,0.09,0.000000919,CpGisland,TRUE,U15,NS
5466,cg21675013,-0.00000247,0.0000017,-1.454310498,0.14687195,loss,ns,-0.00000344,0.00000288,-1.194076698,0.233360859,neg,ns,-0.000200695,0.000845066,-0.237490743,0.812432979,neg,ns,0.090212456,0.0000218,0.0000291,0.749631703,0.454045047,pos,ns,0.049868702,Fxr1,Fxr1_fiveUTR,3,34020069,34020118,34020117,34020118,50,-,GAAAGTTTCTAGAATCTCTTCCCAGCGGCCTTTGCGGTTCCAACATGGCG,Promoter (<=1kb),3,34020098,34069337,49240,1,Fxr1-202,0,Fxr1-201;Fxr1-202;Fxr1-207;Fxr1-206;Fxr1-204;Fxr1-208,Fxr1;Fxr1;Fxr1;Fxr1;Fxr1;Fxr1,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,4,14359,ENSMUSG00000027680,conserved gene and region,3,34019743,34020819,1077,*,1077,144,0.767873723,0.913776647,0.133704735,2.21E-129,CpGisland,TRUE,U1,Pr-A
22640,cg09736602,-0.0000082,0.00000328,-2.497829446,0.013013618,loss,ns,0.00000666,0.00000558,1.19402778,0.233379965,pos,ns,-0.000767083,0.001634704,-0.469249152,0.639221413,neg,ns,0.194348686,-0.0000697,0.0000562,-1.240265154,0.215815253,neg,ns,0.929671543,Maf,Maf_Intergenic_downstream,8,115529069,115529118,115529117,115529118,50,-,AACCATCCCCTGGTACCCATGAAGAAGAGCTACGGGTTTTATTAACCTCG,Distal Intergenic,8,115682942,115707096,24155,2,Maf-201,178027,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,23,17132,ENSMUSG00000055435,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5496,cg01824302,0.000031,0.0000129,2.408408533,0.016605602,gain,ns,0.0000261,0.0000219,1.193862566,0.233444502,pos,ns,0.01031364,0.006403815,1.61054616,0.108296395,pos,ns,0.965385999,-0.0000611,0.000220227,-0.277313551,0.781724188,neg,ns,0.557687457,Pbx3,Pbx3_Intron,2,34107984,34108033,34108032,34108033,50,+,CAATTTTAATTTGCATAAAATATTTATCAAGGCTTACGCAAATTTCCGCG,"Intron (Gm38389-201/Gm38389-201, intron 1 of 1)",2,34172873,34288852,115980,2,Pbx3-210,180819,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,82,18516,ENSMUSG00000038718,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27322,cg09075088,0.0000377,0.00000604,6.245775452,1.39E-09,gain,yes,-0.0000123,0.0000103,-1.193705942,0.233505694,neg,ns,0.008641398,0.003007744,2.873049155,0.004345889,pos,ns,2.361921329,-0.000295152,0.000103436,-2.853472881,0.004615416,neg,ns,0.085421147,Slc12a5,Slc12a5_Intron,2,164967904,164967953,164967904,164967905,50,-,CGACCTAGTTCCCTGCCGTTATTTTTAGGGCGCGGGATGGCACCTGCCCA,"Intron (Slc12a5-202/Slc12a5, intron 1 of 3)",2,164960816,164974543,13728,1,Slc12a5-202,7088,Slc12a5-202;Slc12a5-209;Slc12a5-207;Slc12a5-201;Slc12a5-208;Slc12a5-210;Slc12a5-206,Slc12a5;Slc12a5;Slc12a5;Slc12a5;Slc12a5;Slc12a5;Slc12a5,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,9,57138,ENSMUSG00000017740,conserved gene and region,2,164967855,164968493,639,*,639,68,0.719874804,0.821958232,0.106416275,9.46E-54,CpGisland,TRUE,U13,Hc-P
10922,cg12972682,-0.0000125,0.00000187,-6.677188253,1.13E-10,loss,yes,0.00000379,0.00000317,1.193523739,0.233576895,pos,ns,-0.000900792,0.000929689,-0.968917327,0.333341771,neg,ns,0.477110262,-0.000000971,0.000032,-0.030385179,0.975779417,neg,ns,0.950451888,Tcf7l2,Tcf7l2_Intron,19,55888106,55888155,55888106,55888107,50,-,CGCTAGGCCAGTGGTCGATAGGAGAGATGGAACATTTGGGAAAGTTCCTA,"Intron (Tcf7l2-213/Tcf7l2, intron 4 of 13)",19,55741820,55933229,191410,1,Tcf7l2-213,146286,Tcf7l2-213;Tcf7l2-201;Tcf7l2-208;Tcf7l2-211;Tcf7l2-212;Tcf7l2-206;Tcf7l2-204;Tcf7l2-205;Tcf7l2-222;Tcf7l2-215;Tcf7l2-214;Tcf7l2-207;Tcf7l2-202;Tcf7l2-209;Tcf7l2-210;Tcf7l2-217,Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,55,88,21416,ENSMUSG00000024985,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24281,cg23786996,0.0000558,0.00000665,8.393045747,1.71E-15,gain,yes,-0.0000135,0.0000113,-1.193488433,0.233590694,neg,ns,0.012199915,0.003308983,3.686907568,0.000267919,pos,ns,3.571996238,-0.000404999,0.000113796,-3.559005189,0.000430568,neg,ns,0.119357699,Pou3f1,Pou3f1_Intron,4,124478088,124478137,124478088,124478089,50,-,CGGGGAGGTCGGAGGTTAAATGAACACGGTTGTTTATGAAGACACAGCCC,"Intron (1700057H15Rik-202/1700057H15Rik-202, intron 2 of 3)",4,124656807,124660655,3849,1,Pou3f1-201,-178719,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,43,85,18991,ENSMUSG00000090125,mapped to different genes,4,124478033,124478138,106,*,106,9,0.58490566,1.063545151,0.08490566,0.0000015,CpGisland,TRUE,U3,Pr-B
26848,cg05313144,-0.00000313,0.00000134,-2.328537023,0.020526391,loss,ns,-0.00000272,0.00000228,-1.19337709,0.233634213,neg,ns,0.000222646,0.000668316,0.333145104,0.739249954,pos,ns,0.131208694,-0.0000224,0.000023,-0.97257606,0.331522307,neg,ns,0.966221879,Asxl1,Asxl1_Exon,2,153397926,153397975,153397926,153397927,50,+,CGTAACACAATTGAAAGTGTTCACACCGAAAAGCCACAGCCCACTAAAGA,"Exon (Asxl1-205/Asxl1, exon 11 of 12)",2,153345829,153404007,58179,1,Asxl1-205,52097,Asxl1-205;Asxl1-201;Asxl1-203,Asxl1;Asxl1;Asxl1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,8,228790,ENSMUSG00000042548,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22295,cg17662681,0.00000295,0.0000153,0.193270375,0.846873793,gain,ns,-0.0000309,0.0000259,-1.193286283,0.233669711,neg,ns,-0.023469399,0.007591728,-3.091443626,0.002172774,neg,ns,2.662985465,0.000905392,0.000261079,3.46788549,0.000598749,pos,ns,0.228269032,Setd5,Setd5_Intron,6,113082394,113082443,113082442,113082443,50,-,TTATGCCTCCAGTAGGCCTGTCAATATGGCCAAACAGCTAGATAAGTGCG,"Intron (Setd5-209/Setd5, intron 1 of 2)",6,113077365,113107561,30197,1,Setd5-209,5029,Setd5-209;Setd5-201;Setd5-206;Setd5-205;Setd5-203,Setd5;Setd5;Setd5;Setd5;Setd5,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,19,72895,ENSMUSG00000034269,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6955,cg05350610,-0.00000171,0.0000023,-0.743383449,0.457812574,loss,ns,0.00000466,0.0000039,1.193192925,0.233706209,pos,ns,0.00382033,0.001143673,3.340403682,0.00093879,pos,ns,3.027431357,-0.000137013,0.0000393,-3.483609582,0.000565908,neg,ns,0.9550013,Ofcc1,Ofcc1_Intron,13,40067890,40067939,40067890,40067891,50,+,CGGCACAAATTTATTAAAGGTATATGTTTGCATGGGATAATAATTGGGTC,"Intron (Ofcc1-201/Ofcc1, intron 16 of 18)",13,40001882,40288011,286130,2,Ofcc1-201,220072,Ofcc1-201;Ofcc1-203,Ofcc1;Ofcc1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,8,218165,ENSMUSG00000047094,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22335,cg18156390,0.000000145,0.00000374,0.038755996,0.969109875,gain,ns,-0.00000757,0.00000635,-1.193166975,0.233716355,neg,ns,0.00122525,0.001859853,0.658788789,0.510520417,pos,ns,0.291986884,-0.000135817,0.000064,-2.123466663,0.034506588,neg,ns,0.922640487,Brpf1,Brpf1_Exon,6,113309905,113309954,113309953,113309954,50,+,CTACAAGAGTTACAGTGGTATTGAGTACCACCTGTACCACTATGACCACG,"Exon (Brpf1-204/Brpf1, exon 2 of 14)",6,113307137,113324857,17721,1,Brpf1-204,2768,Brpf1-204;Brpf1-209;Brpf1-203;Brpf1-202;Brpf1-201;Brpf1-210;Brpf1-208;Cpne9-201;Cpne9-205;Cpne9-206,Brpf1;Brpf1;Brpf1;Brpf1;Brpf1;Brpf1;Brpf1;Cpne9;Cpne9;Cpne9,0;0;0;0;0;0;0;27598;27598;21401,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,16,78783,ENSMUSG00000001632,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19236,cg03899760,0.0000645,0.00000827,7.80483963,9.22E-14,gain,yes,-0.0000168,0.000014,-1.193086467,0.233747834,neg,ns,0.007643027,0.004114761,1.857465697,0.064193067,pos,ns,1.192511871,-0.00033593,0.000141506,-2.373955493,0.01820761,neg,ns,0.052279675,Wnt11,Wnt11_Intergenic_upstream,7,98815432,98815481,98815480,98815481,50,+,GTATGATTCTCGGTTTGGGTCCGAGAGGTCCCGGGTTCAAATCCCGGACG,Distal Intergenic,7,98835112,98846587,11476,1,Wnt11-203,-19631,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,6,22411,ENSMUSG00000015957,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
9989,cg00450910,-0.00000606,0.00000244,-2.481478442,0.013613656,loss,ns,0.00000495,0.00000415,1.193076653,0.233751672,pos,ns,0.002098662,0.001215877,1.726048422,0.08533508,pos,ns,1.068872398,-0.000100225,0.0000418,-2.396933855,0.017124772,neg,ns,0.943650304,Hectd1,Hectd1_Exon,12,51794806,51794855,51794854,51794855,50,+,TCACAAACTTCTTTTAACAGTGCTTCAGAGCAAAAATGAATCATTTTTCG,"Exon (Hectd1-201/Hectd1, exon 11 of 43)",12,51743722,51829536,85815,2,Hectd1-201,34681,Hectd1-201;Hectd1-202,Hectd1;Hectd1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,19,19,207304,ENSMUSG00000035247,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3787,cg11926564,-0.00000933,0.00000471,-1.982115149,0.048349154,loss,ns,0.00000954,0.000008,1.192989979,0.233785566,pos,ns,0.003280633,0.002343597,1.399827884,0.162564802,pos,ns,0.788973482,-0.000236388,0.0000806,-2.932989933,0.003607356,neg,ns,0.932706927,Nlgn1,Nlgn1_Exon,3,25433846,25433895,25433846,25433847,50,-,CGAAGAACCACCTCATGTGGATGAATGGACTCACATTCATGATCCAAATC,"Exon (Nlgn1-205/Nlgn1, exon 8 of 8)",3,25426215,26332460,906246,2,Nlgn1-205,898565,Nlgn1-205;Nlgn1-201;Nlgn1-202;Nlgn1-203,Nlgn1;Nlgn1;Nlgn1;Nlgn1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,7,192167,ENSMUSG00000063887,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15444,cg19614548,0.000218204,0.0000167,13.07377084,2.08E-31,gain,yes,-0.0000338,0.0000284,-1.19271521,0.233893037,neg,ns,0.027259513,0.008306878,3.281559318,0.001150121,pos,ns,2.939256401,-0.000899481,0.000285673,-3.148639252,0.001800051,neg,ns,0.146550431,Lurap1l,Lurap1l_Exon,4,80911358,80911407,80911406,80911407,50,-,GAAGACAGCCCGCTGCCAGACCTCAGAGACATCGAGCTGAAGCTGGGGCG,Promoter (<=1kb),4,80910646,80955628,44983,1,Lurap1l-201,712,Lurap1l-201,Lurap1l,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,52829,ENSMUSG00000048706,mapped to different genes,4,80911103,80911484,382,*,382,36,0.685863874,0.804351641,0.094240838,1.10E-26,CpGisland,TRUE,U1,Pr-A
23416,cg09067962,-0.0000022,0.00000258,-0.854008422,0.393759763,loss,ns,0.00000523,0.00000439,1.192654174,0.233916915,pos,ns,0.001734636,0.001285018,1.34989231,0.178035362,pos,ns,0.749493728,0.000049,0.0000442,1.108062084,0.268693968,pos,ns,0.053697491,Sp4,Sp4_fiveUTR,12,118301331,118301380,118301379,118301380,50,+,GTGGCTCGGAGGAGGCTGTAGCTGGCACAGGCTCTGCCTCTTTTTCCGCG,Promoter (<=1kb),12,118234933,118301370,66438,2,Sp4-201,0,Sp4-201;Sp4-203;Sp4-202,Sp4;Sp4;Sp4,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,14,20688,ENSMUSG00000025323,conserved gene and region,12,118301295,118301730,436,*,436,58,0.763761468,0.913187924,0.133027523,2.74E-52,CpGisland,TRUE,U1,Pr-A
16740,cg27065527,0.00000149,0.000000946,1.572792602,0.116786875,gain,ns,-0.00000192,0.00000161,-1.192612008,0.233933411,neg,ns,-0.001024222,0.000470732,-2.175805644,0.030324819,neg,ns,1.518201789,0.000045,0.0000162,2.778011895,0.005802634,pos,ns,0.019464356,Med13,Med13_Promoter,11,86358238,86358287,86358286,86358287,50,+,TTTTCCCCCTTTAATCCGAATTCACGGGTTTTCCCTTCGCTTTAATGGCG,Promoter (<=1kb),11,86267033,86357602,90570,2,Med13-201,-636,Med13-201,Med13,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,12,327987,ENSMUSG00000034297,conserved gene and region,11,86357880,86358483,604,*,604,54,0.655629139,0.833316301,0.089403974,1.92E-38,CpGisland,TRUE,U1,Pr-A
4044,cg04426657,-0.00000382,0.00000209,-1.829674378,0.068258919,loss,ns,0.00000423,0.00000354,1.192579885,0.23394598,pos,ns,-0.000251629,0.001037923,-0.242435034,0.808603405,neg,ns,0.092264434,-0.0000574,0.0000357,-1.607911078,0.108872611,neg,ns,0.945189713,Gm45647,Gm45647_Intergenic_upstream,8,26637351,26637400,26637399,26637400,50,+,TCATTGGCACAGCACATATTTTTCCAATATAAAAGCAAATGGAGAATCCG,Distal Intergenic,8,26780315,26780509,195,1,Gm45647-201,-142915,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,46,62,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
57,cg13954984,-0.0000163,0.00000739,-2.203034122,0.02832777,loss,ns,0.000015,0.0000126,1.192408546,0.234013025,pos,ns,0.002729381,0.003676879,0.742309187,0.458462096,pos,ns,0.338696564,-0.000128862,0.000126448,-1.019096759,0.308951694,neg,ns,0.860148345,Nox3,Nox3_Promoter,17,3702393,3702442,3702393,3702394,50,+,CGTTTTCCTGCCACAACAACTAAATATTGAAGACACATATTTGTGATGAG,Promoter (6-7kb),17,3635240,3696261,61022,2,Nox3-201,-6132,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,6,224480,ENSMUSG00000023802,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26121,cg26923572,-0.0000249,0.00000589,-4.235727367,0.0000301,loss,ns,-0.0000119,0.00001,-1.19232048,0.23404749,neg,ns,-0.002045404,0.002930939,-0.697866493,0.485783793,neg,ns,0.313556978,-0.0000384,0.000100795,-0.380693905,0.70369113,neg,ns,0.837546599,Shank2,Shank2_Exon,7,144031331,144031380,144031331,144031332,50,-,CGGAGTCAGACAGCTCCAAAGAAGAGACCATCTATGACACGATCCGGGCC,"Exon (Shank2-203/Shank2, exon 2 of 23)",7,144001928,144424494,422567,1,Shank2-203,29403,Shank2-203;Shank2-206,Shank2;Shank2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,5,210274,ENSMUSG00000037541,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2612,cg14230939,-0.00000255,0.00000469,-0.544327745,0.586607264,loss,ns,-0.0000095,0.00000797,-1.192238036,0.234079759,neg,ns,-0.000195459,0.002334875,-0.08371269,0.933338899,neg,ns,0.029960634,-0.000109055,0.0000803,-1.358161161,0.175400166,neg,ns,0.921975941,Clcn2,Clcn2_Exon,16,20712706,20712755,20712754,20712755,50,+,TTAGCTATAAAGGTCTTGAGTGTGAGGTATTCTTTCAGCACCACTCCCCG,"Exon (Clcn2-201/Clcn2, exon 5 of 24)",16,20702964,20716117,13154,2,Clcn2-201,3362,Clcn2-201;Clcn2-208;Clcn2-209;Clcn2-202;Clcn2-211;Clcn2-204;Clcn2-207;Clcn2-203;Clcn2-210;Clcn2-205;Clcn2-206;Polr2h-201,Clcn2;Clcn2;Clcn2;Clcn2;Clcn2;Clcn2;Clcn2;Clcn2;Clcn2;Clcn2;Clcn2;Polr2h,0;0;0;0;0;0;-3580;-3972;-318;-741;0;-4910,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,12724,ENSMUSG00000022843,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
22250,cg26320696,0.0000882,0.0000134,6.600965118,1.77E-10,gain,yes,-0.0000271,0.0000227,-1.192193886,0.23409704,neg,ns,0.014656629,0.006652711,2.203106278,0.028322633,pos,ns,1.54786638,-0.000521524,0.000228786,-2.279527351,0.023314991,neg,ns,0.067607353,Parva,Parva_fiveUTR,7,112427854,112427903,112427902,112427903,50,+,GTGAGCTGCCTCAAATGCTTGGAATAATTCCGCTTCCGTTTGGAAAGCCG,Promoter (<=1kb),7,112427505,112589629,162125,1,Parva-203,349,Parva-203;Parva-201;Parva-205,Parva;Parva;Parva,0;0;-2,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,6,57342,ENSMUSG00000030770,conserved gene but different region,7,112427689,112428137,449,*,449,40,0.679287305,0.773671061,0.08908686,1.43E-28,CpGisland,TRUE,U1,Pr-A
8071,cg05645012,-0.00000617,0.0000112,-0.552483172,0.581015483,loss,ns,0.0000226,0.000019,1.192093828,0.234136209,pos,ns,0.015578935,0.005560718,2.801604904,0.005404657,pos,ns,2.267231884,-0.000323611,0.000191233,-1.692238046,0.091605384,neg,ns,0.641767129,Pax2,Pax2_Intergenic_upstream,19,44717594,44717643,44717642,44717643,50,-,GACCTTGCAGGACAGCTAATCCATCCGCACATCTATCTTAATTATTCCCG,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-38451,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,19,44717536,44717731,196,*,196,11,0.515306122,0.921367521,0.056122449,0.00000383,CpGisland,TRUE,U13,Hc-P
22938,cg00069876,0.0000576,0.0000178,3.231083274,0.001365769,gain,ns,0.0000361,0.0000303,1.192053185,0.234152121,pos,ns,0.022143609,0.008875308,2.494967847,0.013116903,pos,ns,1.882168695,-0.000846166,0.000305221,-2.772305159,0.005902801,neg,ns,0.227976698,Isl1,Isl1_Exon,13,116308431,116308480,116308431,116308432,50,+,CGCAACCAACACATAGGGAAATCAGACGTTTTTCTGAAATGAAAATAAAT,"Exon (Isl1-201/Isl1, exon 2 of 6)",13,116298281,116309689,11409,2,Isl1-201,1209,Isl1-201;Isl1-202;Isl1-204;Isl1-205,Isl1;Isl1;Isl1;Isl1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,14,16392,ENSMUSG00000042258,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
11965,cg04879029,0.0000339,0.00000357,9.496981985,6.08E-19,gain,yes,-0.00000723,0.00000607,-1.191985433,0.234178647,neg,ns,0.004442523,0.001778195,2.498333195,0.012995511,pos,ns,1.886206641,-0.0000307,0.0000612,-0.502194963,0.615886905,neg,ns,0.074430467,Tbr1,Tbr1_Exon,2,61804969,61805018,61805017,61805018,50,+,GACGGGGTCTCTGAGCTTCGTCACAGTTTCGATGGCTCTGCTGCAGATCG,Promoter (<=1kb),2,61804453,61814114,9662,1,Tbr1-201,516,Psmd14-201;Psmd14-208;Psmd14-202;Tbr1-204;Tbr1-201;Tbr1-202;Tbr1-203,Psmd14;Psmd14;Psmd14;Tbr1;Tbr1;Tbr1;Tbr1,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,24,27,21375,ENSMUSG00000035033,conserved gene and region,2,61804938,61805248,311,*,311,21,0.620578778,0.763323983,0.067524116,9.07E-13,CpGisland,TRUE,U13,Hc-P
21054,cg01261613,-0.000000902,0.00000198,-0.455091887,0.649361688,loss,ns,-0.00000401,0.00000337,-1.191861454,0.234227193,neg,ns,0.002297447,0.000986243,2.329494163,0.020474974,pos,ns,1.688776649,-0.000120247,0.0000339,-3.545341327,0.000452591,neg,ns,0.951762443,Wdr82,Wdr82_Exon,9,106178840,106178889,106178888,106178889,50,-,CCAGGCTGAGGTAGTAGTTTGTACAGTTTGAGGGTCTATGATACCACCCG,"Exon (Mirlet7g-201/Mirlet7g-201, exon 1 of 1)",9,106170928,106191139,20212,1,Wdr82-201,7912,Wdr82-201;Wdr82-203;Wdr82-205;Wdr82-204;Wdr82-206;Wdr82-202,Wdr82;Wdr82;Wdr82;Wdr82;Wdr82;Wdr82,0;7911;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,77305,ENSMUSG00000020257,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5568,cg08697532,-0.00000237,0.00000187,-1.266700845,0.206213165,loss,ns,0.00000379,0.00000318,1.191829285,0.234239791,pos,ns,0.0022168,0.000931209,2.380560421,0.017890351,pos,ns,1.747381129,-0.0000799,0.000032,-2.494858114,0.013120878,neg,ns,0.954014476,Pbx3,Pbx3_Intron,2,34275809,34275858,34275809,34275810,50,-,CGCTCCGTTAGCCCTCATTACCCCGATCACTGCAAATACAGATGCAAGGC,"Intron (Pbx3-202/Pbx3, intron 2 of 7)",2,34171457,34372038,200582,2,Pbx3-202,96180,Pbx3-202;Pbx3-201;Pbx3-210;Pbx3-206;Pbx3-207;Pbx3-209;Pbx3-204;Pbx3-205;Pbx3-203,Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,82,18516,ENSMUSG00000038718,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10090,cg22943986,0.00013349,0.000012,11.09730095,2.56E-24,gain,yes,-0.0000244,0.0000204,-1.191619925,0.234321788,neg,ns,0.023616596,0.005986984,3.944656431,0.0000989,pos,ns,4.004902823,-0.000516438,0.000205892,-2.508295981,0.012641975,neg,ns,0.20439145,Gm28308,Gm28308_Intron,6,52165212,52165261,52165212,52165213,50,+,CGGGAAGACGCCTCGCACCTCACAAATCATTTAAGCACCTCAGTCTGACG,"Intron (Gm28308-201/Gm28308, intron 3 of 3)",6,52163359,52213339,49981,2,Gm28308-201,48078,Gm28308-201;Hoxa2-201;Hoxa3-201,Gm28308;Hoxa2;Hoxa3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,46,103,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1362,cg25354602,0.0000149,0.00000256,5.828229939,0.000000014,gain,yes,-0.00000519,0.00000436,-1.191512884,0.234363719,neg,ns,0.001691517,0.001276132,1.325502841,0.185980423,pos,ns,0.730532769,0.0000396,0.0000439,0.903108503,0.367169521,pos,ns,0.046678499,Sox1,Sox1_Intron,8,12431349,12431398,12431349,12431350,50,+,CGCTCTTTTGTCTGATAACTAATTTGAGTTAATGCGATCTTTATGTAAAG,"Intron (Sox1ot-201/Sox1ot-201, intron 7 of 8)",8,12395295,12400126,4832,1,Sox1-201,36054,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,15,20664,ENSMUSG00000096014,mapped to different genes,8,12431094,12431559,466,*,466,37,0.603004292,0.882846902,0.079399142,1.38E-24,CpGisland,TRUE,U13,Hc-P
23245,cg18662635,-0.00000181,0.00000276,-0.656397029,0.512055633,loss,ns,-0.00000558,0.00000468,-1.191312045,0.234442409,neg,ns,0.002257965,0.001371216,1.646687347,0.100635643,pos,ns,0.997248174,-0.000088,0.0000472,-1.866414314,0.062927451,neg,ns,0.929536622,Eri3,Eri3_Exon,4,117593090,117593139,117593090,117593091,50,+,CGAAGGAAGGCCTCTTAGATCCAAACGTCAAGTCAATTTTTGTCACCTGT,"Exon (Eri3-201/Eri3, exon 6 of 9)",4,117550365,117674297,123933,1,Eri3-201,42725,Eri3-201;Eri3-206;Eri3-202;Eri3-204,Eri3;Eri3;Eri3;Eri3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,97,140546,ENSMUSG00000033423,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27708,cg19024342,0.0000907,0.0000176,5.16620407,0.000000429,gain,yes,-0.0000355,0.0000298,-1.191219252,0.234478772,neg,ns,0.024871312,0.008737789,2.8464081,0.004716361,pos,ns,2.326392956,-0.00078915,0.000300492,-2.62619345,0.009063267,neg,ns,0.411044985,Zbtb18,Zbtb18_Exon,1,177458942,177458991,177458990,177458991,50,+,AGTGGAAGGAGTCTCTTTGTTGACAGCTTTCCATCTGGACTTTGGATACG,"Exon (Gm29856-201/Gm29856-201, exon 1 of 3)",1,177445821,177450764,4944,1,Zbtb18-201,13121,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,22,30928,ENSMUSG00000063659,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19858,cg03233918,-0.0000169,0.0000125,-1.349291632,0.178227939,loss,ns,0.0000253,0.0000212,1.191108653,0.234522118,pos,ns,-0.010280807,0.006220225,-1.652803129,0.0993833,neg,ns,1.002686587,0.000165802,0.000213913,0.775090199,0.438877184,pos,ns,0.176841686,Cycs-ps2,Cycs-ps2_Intergenic_downstream,5,101323400,101323449,101323400,101323401,50,+,CGGGAACCTCGTATCTGTGTGGTAATGTCAGAGATAATGTTATGATTCGC,Distal Intergenic,5,101305578,101305869,292,1,Cycs-ps2-201,17822,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,10,13065,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8058,cg19826364,0.000113535,0.0000116,9.773240452,7.68E-20,gain,yes,-0.0000235,0.0000197,-1.190991541,0.234568023,neg,ns,0.002781351,0.005781862,0.481047645,0.630821984,pos,ns,0.20009318,0.000505623,0.000198838,2.542891917,0.011479825,pos,ns,0.205995872,Pax5,Pax5_Promoter,4,44710677,44710726,44710677,44710678,50,+,CGCCGAGCTGGGGTAGCTGATCACTGAGCTGAAACTAAACGTTTTAGGTG,Promoter (<=1kb),4,44524757,44710487,185731,2,Pax5-201,-190,Pax5-201;Pax5-202;Pax5-203;Pax5-204;Pax5-205;Pax5-207;Pax5-206;Pax5-209;Pax5-210;Pax5-212;Pax5-213;Pax5-214;Pax5-215,Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5,0;0;0;0;0;0;0;0;0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,10,45,18507,ENSMUSG00000014030,conserved gene but different region,4,44710639,44710987,349,*,349,27,0.601719198,0.855004083,0.077363897,8.51E-18,CpGisland,TRUE,NA,NRS
26453,cg27514424,0.0000275,0.00000611,4.498249015,0.0000097,gain,ns,-0.0000124,0.0000104,-1.19094603,0.234585863,neg,ns,0.003848222,0.003039965,1.265877224,0.20650754,pos,ns,0.685064086,-0.00017974,0.000104544,-1.719275805,0.086562366,neg,ns,0.0637375,Foxa2,Foxa2_Promoter,2,148045608,148045657,148045608,148045609,50,+,CGCCGCAAGTCAATATTTGATCACAAAGTTAATATTATCTCAAGGCTAAC,Promoter (<=1kb),2,148042877,148045948,3072,2,Foxa2-202,291,Foxa2-202;Foxa2-201;Foxa2-204;Foxa2-203,Foxa2;Foxa2;Foxa2;Foxa2,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,4,25,15376,ENSMUSG00000037025,conserved gene and region,2,148045514,148045612,99,*,99,10,0.656565657,0.955598456,0.101010101,5.67E-08,CpGisland,TRUE,NA,NRS
3034,cg20424596,-0.000049,0.00000963,-5.092622095,0.000000614,loss,yes,0.0000195,0.0000164,1.190853985,0.234621949,pos,ns,-0.00640263,0.004793051,-1.335815131,0.182589553,neg,ns,0.738524073,-0.000212556,0.000164833,-1.28952327,0.198177489,neg,ns,0.624136834,Asxl3,Asxl3_Exon,18,22452392,22452441,22452392,22452393,50,-,CGTGTTGTTTTGACACCATTAAAGGTGTCTGATGAGCAGTCGGATTCGCC,"Exon (Asxl3-204/Asxl3, exon 6 of 12)",18,22344246,22530015,185770,1,Asxl3-204,108146,Asxl3-204;Asxl3-202;Asxl3-201,Asxl3;Asxl3;Asxl3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,5,211961,ENSMUSG00000045215,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10259,cg13433256,0.0000492,0.00000547,8.986630971,2.56E-17,gain,yes,-0.0000111,0.0000093,-1.190739125,0.234666985,neg,ns,0.007362045,0.002723863,2.702795981,0.007254904,pos,ns,2.139368353,-0.0000481,0.0000937,-0.513608481,0.607891617,neg,ns,0.138348149,Evx1,Evx1_fiveUTR,6,52313557,52313606,52313557,52313558,50,-,CGTCACCAGCGGTACTGTAATGACGATTGCAGCAGGAGGATGACAGCTTA,Promoter (<=1kb),6,52313498,52318378,4881,1,Evx1-201,59,Evx1-201;Evx1-202,Evx1;Evx1,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,7,19,14028,ENSMUSG00000005503,mapped to different genes,6,52313448,52313581,134,*,134,12,0.574626866,1.093877551,0.089552239,6.76E-09,CpGisland,TRUE,U13,Hc-P
10098,cg02693607,0.000200185,0.0000217,9.245025853,3.91E-18,gain,yes,-0.0000438,0.0000368,-1.190413642,0.234794637,neg,ns,0.028988947,0.010777078,2.689870802,0.007535145,pos,ns,2.122908406,-0.000845688,0.000370623,-2.281802198,0.023178588,neg,ns,0.152926769,Gm28308,Gm28308_Exon,6,52172943,52172992,52172991,52172992,50,+,GCAGCTACAAATATTTGCTTAACTTGCGTCTGGAGTTGGGGGATTTTCCG,"Exon (Gm15050-201/Gm15050-201, exon 1 of 2)",6,52163359,52213339,49981,2,Gm28308-201,40347,Gm28308-201;Hoxa3-201;Hoxa3-202,Gm28308;Hoxa3;Hoxa3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,30,103,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
11189,cg09744548,0.00000274,0.00000556,0.492285319,0.622866104,gain,ns,0.0000113,0.00000945,1.190348823,0.234820064,pos,ns,-0.003026153,0.002769275,-1.092760099,0.275347612,neg,ns,0.560118686,0.0000867,0.0000952,0.910368449,0.363335529,pos,ns,0.910149037,Gm13527,Gm13527_Intergenic_upstream,2,56912760,56912809,56912808,56912809,50,+,AGCTTCAAGCACATCTATGGCTGGCCTTGTATTCTTAGCTTTATCAAGCG,Distal Intergenic,2,57079748,57080438,691,1,Gm13527-201,-166939,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,13,13,227920,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14102,cg05424351,0.00000442,0.00000402,1.101545094,0.271514014,gain,ns,-0.00000812,0.00000682,-1.190171648,0.234889577,neg,ns,-0.001383018,0.001998714,-0.691953965,0.489484169,neg,ns,0.31026135,0.0001575,0.0000687,2.291382958,0.022611726,pos,ns,0.09845076,Hoxd11,Hoxd11_Exon,2,74679522,74679571,74679570,74679571,50,+,GTGGCAATAAATGAAATGACTCAGAATCCCTTCCCCAGTCAGCTTTTACG,Promoter (<=1kb),2,74679557,74687016,7460,1,Hoxd11-201,0,Hoxd11-201;Hoxd11-202;Hoxd12-201,Hoxd11;Hoxd11;Hoxd12,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,14,15431,ENSMUSG00000042499,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
9805,cg06790804,0.00000417,0.00000634,0.657011718,0.511660847,gain,ns,0.0000128,0.0000108,1.190158165,0.234894868,pos,ns,-0.00090623,0.003156186,-0.287128039,0.774206111,neg,ns,0.111143405,0.00000735,0.000108541,0.067674508,0.946088369,pos,ns,0.834124185,Frmd7,Frmd7_threeUTR,X,50901696,50901745,50901744,50901745,50,-,CCATGTGAGCAACAGCCAGGTGAATCTGCATCCCTTCACCATCACTGGCG,3' UTR,20,50895180,50942710,47531,2,Frmd7-201,40965,Frmd7-201;Frmd7-202,Frmd7;Frmd7,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,2,385354,ENSMUSG00000036131,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4771,cg01968164,0.00000188,0.00000203,0.926705433,0.354800395,gain,ns,-0.00000411,0.00000345,-1.190044661,0.234939408,neg,ns,-0.00269448,0.001010888,-2.665457995,0.008091199,neg,ns,2.091987104,0.0000572,0.0000348,1.644995174,0.100984376,pos,ns,0.046219084,Mecom,Mecom_fiveUTR,3,30509762,30509811,30509762,30509763,50,+,CGCCAAAAAAAGTTTGGAGCGATTTATCACTTTGATTTGGAGATCTTGTC,Promoter (<=1kb),3,29965456,30509822,544367,2,Mecom-207,11,Mecom-212;Mecom-213;Mecom-207;Mecom-208;Mecom-211;Mecom-209,Mecom;Mecom;Mecom;Mecom;Mecom;Mecom,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,13,80,14013,ENSMUSG00000027684,conserved gene and region,3,30509690,30509782,93,*,93,8,0.537634409,1.24,0.086021505,0.00000681,CpGisland,TRUE,U3,Pr-B
4499,cg03158789,0.000101078,0.0000108,9.354049499,1.75E-18,gain,yes,0.0000218,0.0000184,1.190000226,0.234956847,pos,ns,0.009779995,0.005378181,1.818457862,0.069959074,pos,ns,1.155155945,0.000213752,0.000184955,1.15569848,0.248694454,pos,ns,0.13315247,Ntng2,Ntng2_Exon,2,29250999,29251048,29251047,29251048,50,+,ATTTTATCAGGATTTCTGAACTCAGATTTCTCTGTCTTATTGAATTAGCG,"Exon (6530402F18Rik-201/6530402F18Rik-201, exon 5 of 5)",2,29203822,29253005,49184,2,Ntng2-202,1957,Ntng2-211;Ntng2-210;Ntng2-201;Ntng2-203;Ntng2-204;Ntng2-202;Ntng2-209,Ntng2;Ntng2;Ntng2;Ntng2;Ntng2;Ntng2;Ntng2,-2874;-2900;-2959;-2959;-2959;0;-2867,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,2,171171,ENSMUSG00000035513,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
12483,cg08150966,-0.00000462,0.00000182,-2.539083882,0.011602903,loss,ns,0.00000368,0.00000309,1.189990123,0.234960813,pos,ns,0.001642029,0.000906343,1.811708575,0.07099883,pos,ns,1.148748808,-0.0000539,0.0000312,-1.729400598,0.084732874,neg,ns,0.959132518,Man2a1,Man2a1_Intron,17,64547121,64547170,64547121,64547122,50,+,CGTAATGGCCTTGAGGCATCTTAATGGAAACACTCTAATAAAAGTTTATC,"Intron (AU016765-201/AU016765-201, intron 1 of 3)",17,64600736,64755110,154375,1,Man2a1-201,-53566,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,17158,ENSMUSG00000024085,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13034,cg15969104,-0.0000009,0.0000021,-0.427742317,0.669135724,loss,ns,-0.00000425,0.00000357,-1.189949136,0.234976899,neg,ns,0.00435581,0.001047186,4.15953779,0.0000413,pos,ns,4.38370115,-0.000116045,0.000036,-3.222350212,0.001406682,neg,ns,0.061125369,Ppm1l,Ppm1l_Exon,3,69317567,69317616,69317615,69317616,50,+,ATGATAGAGGATACAATGACTTTGCTGTCTCTGCTGGGTCGCATCATGCG,Promoter (<=1kb),3,69316861,69560802,243942,1,Ppm1l-201,706,Gm17214-201;Ppm1l-201,Gm17214;Ppm1l,2969;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,242083,ENSMUSG00000027784,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20750,cg02715589,0.000000851,0.00000413,0.20625328,0.836728463,gain,ns,-0.00000834,0.00000701,-1.189898477,0.234996782,neg,ns,-0.002048356,0.002053999,-0.997252769,0.319419609,neg,ns,0.495638426,0.000118221,0.0000706,1.673649532,0.095208162,pos,ns,0.884448176,Wnt2b,Wnt2b_Intergenic_downstream,3,104943514,104943563,104943562,104943563,50,-,TGCTTACGGAGAACTCTGTGTCTGGCACCTCTCTCCACAAGGCCCAGGCG,Distal Intergenic,3,104960414,104961721,1308,2,Wnt2b-202,18207,Wnt2b-201,Wnt2b,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,4,22414,ENSMUSG00000027840,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6917,cg07731972,-0.0000122,0.00000629,-1.941367428,0.053119692,loss,ns,0.0000127,0.0000107,1.189855893,0.235013497,pos,ns,-0.000806604,0.003131892,-0.25754522,0.796928785,neg,ns,0.098580486,-0.000155364,0.000107705,-1.442488976,0.150174057,neg,ns,0.797048471,Rims2,Rims2_Exon,15,39534966,39535015,39535014,39535015,50,-,TGCCTTCATTAATGACTGGAAGATCTGCCCCTCCTTCACCTGCCTTATCG,"Exon (Rims2-205/Rims2, exon 17 of 26)",15,39198332,39681940,483609,1,Rims2-202,336634,Rims2-202;Rims2-205;Rims2-201;Rims2-206,Rims2;Rims2;Rims2;Rims2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,16,19,116838,ENSMUSG00000037386,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9151,cg21836885,-0.0000205,0.00000788,-2.595354092,0.009898871,loss,ns,-0.0000159,0.0000134,-1.189819802,0.235027664,neg,ns,0.000341616,0.003922131,0.087099492,0.930648663,pos,ns,0.031214242,-0.0001236,0.000134882,-0.916355997,0.360192505,neg,ns,0.94098319,Gm4791,Gm4791_Intergenic_downstream,9,47234767,47234816,47234767,47234768,50,-,CGAAAAATATTAATAGCAAAAGTGAGAAAGGGAAAGAAGGAATTTTGGGC,Distal Intergenic,9,46998741,47003860,5120,1,Gm4791-201,236075,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,18,215467,ENSMUSG00000094893,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22383,cg24826673,-0.00000175,0.00000359,-0.486845672,0.626711737,loss,ns,0.00000725,0.00000609,1.189810303,0.235031393,pos,ns,0.001653387,0.001785423,0.926048041,0.355141369,pos,ns,0.449598735,-0.0000664,0.0000614,-1.080859911,0.280599566,neg,ns,0.882501997,Sdk2,Sdk2_Intron,11,113877714,113877763,113877714,113877715,50,+,CGGATTGAAAGCTGCTGATATAGCTGAATCCATAAAAGTGTGCTCTAAGT,"Intron (Sdk2-201/Sdk2, intron 5 of 44)",11,113776374,114066218,289845,2,Sdk2-201,188455,Sdk2-201;Sdk2-203;Sdk2-205,Sdk2;Sdk2;Sdk2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,11,237979,ENSMUSG00000041592,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25263,cg19847683,0.00000781,0.00000497,1.572277505,0.116906248,gain,ns,-0.00001,0.00000844,-1.189625586,0.235103912,neg,ns,-0.002001185,0.002471938,-0.809561113,0.418813412,neg,ns,0.377979419,0.000105083,0.000085,1.236129173,0.217346349,pos,ns,0.133863283,Cxxc4,Cxxc4_Exon,3,134240648,134240697,134240648,134240649,50,-,CGGGACACCAGATCTGCAAATTTAGAAAATGTGAAGAGCTAAAGAAAAAA,"Exon (Cxxc4-203/Cxxc4, exon 3 of 4)",3,134236484,134259620,23137,1,Cxxc4-204,4164,Cxxc4-204;Cxxc4-203;Cxxc4-202;Cxxc4-201;Cxxc4-205,Cxxc4;Cxxc4;Cxxc4;Cxxc4;Cxxc4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,18,20,319478,ENSMUSG00000044365,conserved gene and region,3,134240265,134240649,385,*,385,21,0.587012987,0.63362069,0.054545455,5.57E-11,CpGisland,TRUE,U3,Pr-B
13226,cg19600357,-0.00000896,0.00000314,-2.856112206,0.004578212,loss,ns,0.00000634,0.00000533,1.189435089,0.235178717,pos,ns,0.000413926,0.00156071,0.265216526,0.791018936,pos,ns,0.10181312,-0.00000226,0.0000537,-0.042164569,0.966394651,neg,ns,0.063394735,Med10,Med10_Exon,13,69810005,69810054,69810005,69810006,50,-,CGTCAGTGACTTCCAGCCCAGCAGCCAGGCCGGGCTCAACCAAAAGCTGT,"Exon (Med10-206/Med10, exon 2 of 4)",13,69802395,69813799,11405,1,Med10-206,7610,Med10-206;Med10-205;Med10-201;Med10-203;Med10-204;Med10-202,Med10;Med10;Med10;Med10;Med10;Med10,0;0;0;0;0;-1531,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,28077,ENSMUSG00000021598,conserved gene and region,13,69809753,69810366,614,*,614,51,0.67752443,0.72514647,0.083061889,1.17E-34,CpGisland,TRUE,U1,Pr-A
11682,cg21262011,-0.00000184,0.00000122,-1.509706429,0.132136903,loss,ns,-0.00000247,0.00000207,-1.189430871,0.235180373,neg,ns,0.0002586,0.000607327,0.425799564,0.670549374,pos,ns,0.173569239,-0.00000489,0.0000209,-0.233924707,0.815197838,neg,ns,0.969133832,Baz2b,Baz2b_Exon,2,59907511,59907560,59907559,59907560,50,+,TGAATGGTGGTACTTAAGGGGCTCTTCAGATACCTTCTTTCAATGTTCCG,"Exon (Baz2b-202/Baz2b, exon 30 of 35)",2,59899363,60125697,226335,2,Baz2b-202,218137,Baz2b-202;Baz2b-201;Baz2b-204,Baz2b;Baz2b;Baz2b,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,9,407823,ENSMUSG00000026987,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21398,cg13806158,-0.00000371,0.00000319,-1.164322304,0.245188684,loss,ns,0.00000644,0.00000542,1.189374694,0.235202436,pos,ns,0.003774237,0.001586614,2.378799239,0.017974468,pos,ns,1.745343953,-0.000104985,0.0000546,-1.924091823,0.055258361,neg,ns,0.93241061,Strip1,Strip1_Exon,3,107626774,107626823,107626774,107626775,50,-,CGTGCCCACCTCCAGGAGGAGAAAGATGTTGTAGCGCATCCAGGACTGCA,"Exon (Strip1-201/Strip1, exon 5 of 21)",3,107612532,107631694,19163,2,Strip1-201,4871,Gm10961-201;Strip1-201;Strip1-202;Strip1-204,Gm10961;Strip1;Strip1;Strip1,-4499;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,229707,ENSMUSG00000014601,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5811,cg08823114,-0.0000258,0.0000111,-2.334076115,0.020230392,loss,ns,0.0000223,0.0000188,1.189228615,0.235259814,pos,ns,0.004061229,0.005503751,0.737901963,0.461132228,pos,ns,0.336174525,-0.0000933,0.000189274,-0.492804403,0.622499668,neg,ns,0.781272111,Kirrel3,Kirrel3_Intron,9,34868463,34868512,34868511,34868512,50,-,AAATAGCCTTCAAATTCAAAGGTAAATTGACTTACATTGGGATAATAACG,"Intron (Kirrel3-202/Kirrel3, intron 2 of 16)",9,34486126,35035280,549155,1,Kirrel3-202,382337,Kirrel3-202;Kirrel3-206;Kirrel3-209;Kirrel3-201;Kirrel3-208;Kirrel3-205,Kirrel3;Kirrel3;Kirrel3;Kirrel3;Kirrel3;Kirrel3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,21,67703,ENSMUSG00000032036,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7066,cg25940847,0.00000019,0.00000145,0.130482572,0.896269273,gain,ns,-0.00000294,0.00000247,-1.189210446,0.235266952,neg,ns,0.000196407,0.000723139,0.2716031,0.786107999,pos,ns,0.104517785,-0.0000147,0.0000249,-0.590851649,0.555050349,neg,ns,0.045903298,Tfap2a,Tfap2a_Intron,13,40730869,40730918,40730869,40730870,50,-,CGTCTGGCGAATCACAGGGAAGGGGCAACATTTTAAAAGGTTGCAGGGCA,"Intron (Gm26688-201/Gm26688-201, intron 1 of 2)",13,40715675,40733823,18149,2,Tfap2a-202,2905,Tfap2a-201;Tfap2a-202;Tfap2a-205;Tfap2a-203;Tfap2a-209;Tfap2a-208;Tfap2a-206;Tfap2a-204;Tfap2a-207,Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,57,21418,ENSMUSG00000021359,mapped to different genes,13,40730676,40730877,202,*,202,25,0.633663366,1.381668947,0.123762376,7.36E-22,CpGisland,TRUE,U3,Pr-B
24260,cg02768181,-0.00000437,0.00000684,-0.639198392,0.523165901,loss,ns,-0.0000138,0.0000116,-1.189016572,0.23534312,neg,ns,-0.005040736,0.003403867,-1.480884794,0.139652916,neg,ns,0.854949992,0.0000282,0.000117059,0.241241727,0.809527256,pos,ns,0.641445267,Pou3f1,Pou3f1_Intergenic_upstream,4,124395503,124395552,124395551,124395552,50,-,CAGCTGTGACAGTTCATAGCAACCTGAACTTGAAATGAACCCACCCTACG,Distal Intergenic,4,124656807,124660655,3849,1,Pou3f1-201,-261304,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,24,85,18991,ENSMUSG00000090125,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16142,cg27311928,-0.00000474,0.00000317,-1.493241524,0.136391038,loss,ns,0.00000641,0.00000539,1.188910173,0.235384929,pos,ns,0.004460317,0.00158022,2.82259267,0.005071616,pos,ns,2.294853622,-0.000119257,0.0000543,-2.194504062,0.028940786,neg,ns,0.927006462,Lin52,Lin52_Intron,12,84520856,84520905,84520904,84520905,50,+,ATTAATCAATCCAAATGCAATTAGCATCATGTTTAACCCAGTGATGGACG,"Intron (Lin52-201/Lin52, intron 5 of 5)",12,84451422,84531573,80152,1,Lin52-201,69434,Lin52-201;Lin52-202;Lin52-203,Lin52;Lin52;Lin52,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,6,217708,ENSMUSG00000085793,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27541,cg01943561,-0.000000632,0.00000195,-0.32446902,0.745801805,loss,ns,-0.00000394,0.00000331,-1.188877653,0.235397709,neg,ns,-0.000490439,0.000969971,-0.5056221,0.613481284,neg,ns,0.212198682,-0.0000358,0.0000334,-1.073010739,0.284100854,neg,ns,0.962114192,Gm11011,Gm11011_Intergenic_downstream,2,169412655,169412704,169412703,169412704,50,+,CTGAATTATACCTTGCTCAAAATAATAATGGGTATCAGCTAATAAATACG,Distal Intergenic,2,169582845,169587745,4901,2,Gm11011-201,175041,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,10,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23848,cg04060219,0.00000597,0.00000258,2.314356825,0.021301511,gain,ns,0.00000521,0.00000439,1.18875306,0.235446676,pos,ns,0.000498901,0.001284826,0.388302362,0.698058816,pos,ns,0.156107984,0.000015,0.0000442,0.34031122,0.733852655,pos,ns,0.025177109,En1,En1_Promoter,1,120600375,120600424,120600423,120600424,50,+,GCAGGCGAGATAAGGCGTCGAGACCCTATTTACCGCGCTGAAAGGGACCG,Promoter (1-2kb),1,120602418,120607992,5575,1,En1-201,-1994,En1-201,En1,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,23,36,13798,ENSMUSG00000058665,conserved gene and region,1,120600297,120600444,148,*,148,15,0.540540541,1.38836773,0.101351351,7.56E-12,CpGisland,TRUE,U13,Hc-P
6765,cg00459263,0.0000236,0.00000598,3.939650203,0.000100862,gain,ns,0.0000121,0.0000102,1.188703142,0.235466296,pos,ns,0.005365577,0.002975764,1.803092484,0.072344641,pos,ns,1.140593633,0.0000429,0.000102336,0.419028405,0.675485565,pos,ns,0.055138645,Lhx2,Lhx2_Intron,2,38357377,38357426,38357377,38357378,50,-,CGATGGGTTAATAACAGATCACGAGTAAATTATTCATGATTTTACGAGCT,"Intron (Lhx2-203/Lhx2, intron 3 of 4)",2,38339281,38369199,29919,1,Lhx2-203,18096,Lhx2-203;Lhx2-204;Lhx2-202;Lhx2-201;Lhx2-207;Lhx2-205;Lhx2-206,Lhx2;Lhx2;Lhx2;Lhx2;Lhx2;Lhx2;Lhx2,0;0;0;0;5609;4845;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,33,16870,ENSMUSG00000000247,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
22552,cg16647320,0.00000144,0.00000255,0.565303996,0.572275903,gain,ns,-0.00000516,0.00000434,-1.188451631,0.235565172,neg,ns,-0.001491089,0.001271436,-1.172760126,0.24179239,neg,ns,0.616557372,-0.0000632,0.0000437,-1.444659696,0.149563482,neg,ns,0.914500723,Osbpl10,Osbpl10_threeUTR,9,115109544,115109593,115109544,115109545,50,-,CGAAGAGCCAAGAGTCAGTATTCCGGCCAGCTTCACGAAGTCAGAGAGGT,3' UTR,9,114978569,115232223,253655,1,Osbpl10-207,130975,Osbpl10-207;Osbpl10-204;Osbpl10-208;Osbpl10-202;Osbpl10-201;Osbpl10-203,Osbpl10;Osbpl10;Osbpl10;Osbpl10;Osbpl10;Osbpl10,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,4,74486,ENSMUSG00000040875,conserved gene but different region,9,115109491,115109580,90,*,90,9,0.644444444,0.973557692,0.1,0.00000037,CpGisland,TRUE,U15,NS
24282,cg23000776,0.0000187,0.00000396,4.719086622,0.00000359,gain,ns,-0.00000798,0.00000672,-1.188239477,0.235648598,neg,ns,0.008964165,0.001968481,4.553847789,0.00000758,pos,ns,5.120377908,-0.000272508,0.0000677,-4.025469393,0.0000715,neg,ns,0.076886123,Pou3f1,Pou3f1_Intron,4,124478097,124478146,124478097,124478098,50,-,CGGAGGTTAAATGAACACGGTTGTTTATGAAGACACAGCCCGAATCCATT,"Intron (1700057H15Rik-202/1700057H15Rik-202, intron 2 of 3)",4,124656807,124660655,3849,1,Pou3f1-201,-178710,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,43,85,18991,ENSMUSG00000090125,mapped to different genes,4,124478033,124478138,106,*,106,9,0.58490566,1.063545151,0.08490566,0.0000015,CpGisland,TRUE,U3,Pr-B
27832,cg20640572,-0.00000867,0.00000225,-3.845980862,0.000145751,loss,ns,-0.00000455,0.00000383,-1.188186918,0.235669269,neg,ns,-0.000999515,0.001121357,-0.891343851,0.373436022,neg,ns,0.427783792,0.00000519,0.0000386,0.134508366,0.893087883,pos,ns,0.950137511,Esrrg,Esrrg_Intron,1,188167435,188167484,188167483,188167484,50,+,ATATCAGAACCAACAGTCAATTTTTAGTATTTTCAATTTGCGATATGCCG,"Intron (Esrrg-203/Esrrg, intron 6 of 7)",1,187609029,188214386,605358,1,Esrrg-203,558406,Esrrg-203;Esrrg-201;Esrrg-202,Esrrg;Esrrg;Esrrg,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,60,26381,ENSMUSG00000026610,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11033,cg04281230,-0.0000103,0.000013,-0.792823094,0.428487239,loss,ns,0.0000263,0.0000222,1.188029225,0.235731297,pos,ns,0.000953909,0.006491421,0.146949139,0.883267686,pos,ns,0.053907658,-0.000110355,0.000223239,-0.494334894,0.621419799,neg,ns,0.648299355,Gm13518,Gm13518_Intergenic_downstream,2,56336072,56336121,56336072,56336073,50,-,CGTGGTACACCCACCAGGATTATTATCTAGACCAAAGGCCCAAAGCTCAT,Distal Intergenic,2,56039853,56040085,233,1,Gm13518-201,296268,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,37,37,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11766,cg09648629,-0.000000423,0.0000019,-0.222289454,0.824234937,loss,ns,-0.00000384,0.00000323,-1.187855684,0.235799572,neg,ns,-0.000997619,0.00094654,-1.05396339,0.292720449,neg,ns,0.533546938,-0.000023,0.0000326,-0.705434787,0.481069431,neg,ns,0.031529568,Mbnl1,Mbnl1_Exon,3,60528366,60528415,60528366,60528367,50,+,CGACCTTTCATAAGACAACCCACACTATTGGCTTTCTGCCCAGAATATTG,"Exon (Mbnl1-208/Mbnl1, exon 1 of 2)",3,60472830,60595764,122935,1,Mbnl1-222,55536,Mbnl1-222;Mbnl1-221;Mbnl1-216;Mbnl1-220;Mbnl1-211;Mbnl1-204;Mbnl1-201;Mbnl1-209;Mbnl1-202;Mbnl1-225;Mbnl1-217;Mbnl1-203;Mbnl1-218;Mbnl1-208;Mbnl1-219;Mbnl1-214;Mbnl1-207;Mbnl1-205;Mbnl1-212,Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,19,36,56758,ENSMUSG00000027763,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
9403,cg01431979,-0.00000285,0.00000246,-1.159712701,0.247058229,loss,ns,0.00000497,0.00000418,1.187820137,0.235813559,pos,ns,0.001826561,0.001224666,1.491475941,0.136853457,pos,ns,0.863744226,-0.0000801,0.0000421,-1.902474688,0.058035625,neg,ns,0.937311063,Zbtb16,Zbtb16_Intron,9,48661077,48661126,48661077,48661078,50,+,CGCAGACAATAAAGATAGATTGATCACCCCAGACTTTGTTCATGAATATT,"Intron (Zbtb16-201/Zbtb16, intron 5 of 6)",9,48654297,48835945,181649,2,Zbtb16-201,174819,Zbtb16-201;Zbtb16-202,Zbtb16;Zbtb16,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,37,235320,ENSMUSG00000066687,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16924,cg25397773,-0.0000734,0.000018,-4.075823607,0.0000583,loss,ns,0.0000363,0.0000306,1.187285573,0.236023966,pos,ns,-0.013319243,0.008959152,-1.486663351,0.138120084,neg,ns,0.859743167,-0.000239924,0.000308104,-0.778708797,0.436745264,neg,ns,0.683687204,Gm9540,Gm9540_Intergenic_downstream,9,87443888,87443937,87443936,87443937,50,+,CTAACACGTTACTTAATCTAACTGGCACATTGTAAAATTTTACACATGCG,Distal Intergenic,9,87394250,87394727,478,1,Gm9540-201,49638,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,7,671706,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18400,cg09917010,-0.00000401,0.00000761,-0.526974106,0.598588458,loss,ns,0.0000153,0.0000129,1.187256019,0.236035602,pos,ns,-0.006739615,0.003787378,-1.779493795,0.076138472,neg,ns,1.118395845,0.000122678,0.000130248,0.941883898,0.34698549,pos,ns,0.920544705,Arhgef9,Arhgef9_fiveUTR,X,95130928,95130977,95130928,95130929,50,+,CGCCAGCTTTAAATGCCAACTCCCGGTTGGCCATGGTGACGTGATCCCAT,5' UTR,20,95048935,95166361,117427,2,Arhgef9-202,35384,Arhgef9-202;Arhgef9-217;Arhgef9-205;Arhgef9-207;Arhgef9-210;Arhgef9-203;Arhgef9-209;Arhgef9-206;Arhgef9-208;Arhgef9-204;Arhgef9-216;Arhgef9-219;Arhgef9-201;Arhgef9-218;Arhgef9-220;Arhgef9-213;Arhgef9-214,Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,8,14,236915,ENSMUSG00000025656,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7888,cg04126539,-0.00000932,0.00000475,-1.962849141,0.050557659,loss,ns,0.00000957,0.00000806,1.187133652,0.236083787,pos,ns,0.001073495,0.002362731,0.454345206,0.649898343,pos,ns,0.18715457,0.0000735,0.0000813,0.904259628,0.366559925,pos,ns,0.907901168,Runx2,Runx2_Intron,17,44618512,44618561,44618560,44618561,50,+,CAGTTTCCATGAAATTCATAATGAGCCAAGTGGCTTCAGATGTGGTTGCG,"Intron (Runx2-212/Runx2, intron 5 of 5)",17,44495987,44736176,240190,2,Runx2-212,117615,Runx2-212;Runx2-214;Runx2-203;Runx2-202;Runx2-213;Runx2-204;Runx2-210;Runx2-211;Runx2-207;Runx2-201;Runx2-209,Runx2;Runx2;Runx2;Runx2;Runx2;Runx2;Runx2;Runx2;Runx2;Runx2;Runx2,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,20,12393,ENSMUSG00000039153,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22053,cg26140504,-0.00000548,0.000000991,-5.526176501,6.95E-08,loss,yes,-0.000002,0.00000168,-1.187089592,0.236101138,neg,ns,-0.001506,0.000493303,-3.052888662,0.002462824,neg,ns,2.608566592,0.0000274,0.000017,1.613812308,0.107585552,pos,ns,0.039184229,Map2k6,Map2k6_fiveUTR,11,110399107,110399156,110399107,110399108,50,+,CGCACTAAGATACTCAGTTCCAAGTTTGGAGCTTTTAGCTGCCAGCCCTG,Promoter (<=1kb),11,110399122,110513641,114520,1,Map2k6-201,0,Map2k6-201;Map2k6-202;Map2k6-204,Map2k6;Map2k6;Map2k6,0;0;-103,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,5,26399,ENSMUSG00000020623,conserved gene but different region,11,110398916,110399108,193,*,193,14,0.533678757,1.03051106,0.07253886,4.33E-09,CpGisland,TRUE,U2,Pr-W
5135,cg18856548,-0.000033,0.00000962,-3.433018568,0.000678032,loss,ns,-0.0000194,0.0000163,-1.187044055,0.236119072,neg,ns,0.004135675,0.004789329,0.863518705,0.388519942,pos,ns,0.410586684,-0.000289655,0.000164705,-1.7586314,0.079626794,neg,ns,0.737620612,Fli1,Fli1_Intron,9,32467509,32467558,32467557,32467558,50,-,TTTTACTATTCGCCTACTGTTTTTCCAGGCAGAGAACCAAAAACCAGCCG,"Intron (Fli1-201/Fli1, intron 2 of 8)",9,32422204,32541595,119392,2,Fli1-201,74037,Fli1-201;Fli1-202,Fli1;Fli1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,15,14247,ENSMUSG00000016087,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19567,cg16434657,0.0000134,0.00000618,2.175865858,0.030320271,gain,ns,0.0000125,0.0000105,1.187003024,0.236135232,pos,ns,-0.002593064,0.003075873,-0.843033389,0.399859754,neg,ns,0.398092305,0.000166433,0.000105779,1.573399388,0.116646376,pos,ns,0.025238377,Sox14,Sox14_Intergenic_downstream,9,99869298,99869347,99869298,99869299,50,-,CGGAATGTGAACTTCTCCCGACATATGTTTCCCGCAGATAAGTAAACAAT,Distal Intergenic,9,99874220,99875655,1436,2,Sox14-202,6357,Sox14-201;Sox14-202,Sox14;Sox14,0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,12,18,20669,ENSMUSG00000053747,mapped to different genes,9,99869255,99869839,585,*,585,42,0.608547009,0.785385501,0.071794872,5.36E-26,CpGisland,TRUE,U3,Pr-B
21238,cg00724865,-0.000006,0.0000102,-0.589569358,0.555908833,loss,ns,-0.0000205,0.0000173,-1.186958439,0.236152793,neg,ns,-0.00300877,0.005069127,-0.593547968,0.553247312,neg,ns,0.257080688,0.0000247,0.000174327,0.141487985,0.887576353,pos,ns,0.602708023,Gm9599,Gm9599_Intergenic_upstream,12,106929181,106929230,106929181,106929182,50,-,CGTCTGATTTCATAATATAATTTGTAGAAGTAAAAAAGGCAAGTTAAACA,Distal Intergenic,12,106886446,106886926,481,2,Gm9599-201,-42304,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,4,673604,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4774,cg12034765,0.0000151,0.00000579,2.59859859,0.009807824,gain,ns,-0.0000117,0.00000984,-1.186910664,0.236171611,neg,ns,0.00088773,0.002883814,0.307831997,0.758416894,pos,ns,0.120092001,-0.0000851,0.0000992,-0.857682318,0.391730503,neg,ns,0.033275005,Mecom,Mecom_fiveUTR,3,30509777,30509826,30509825,30509826,50,-,GGAGCGATTTATCACTTTGATTTGGAGATCTTGTCAGATGGCAATCGCCG,Promoter (<=1kb),3,29965456,30509822,544367,2,Mecom-207,0,Mecom-212;Mecom-213;Mecom-207;Mecom-208;Mecom-211;Mecom-209,Mecom;Mecom;Mecom;Mecom;Mecom;Mecom,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,13,80,14013,ENSMUSG00000027684,conserved gene but different region,3,30509822,30509917,96,*,96,11,0.739583333,1.005714286,0.114583333,2.34E-09,CpGisland,TRUE,U3,Pr-B
16501,cg23531839,-0.00000315,0.00000253,-1.242365634,0.215040673,loss,ns,0.00000511,0.00000431,1.186729439,0.236243004,pos,ns,0.002234337,0.001261481,1.771201075,0.077509768,pos,ns,1.110643562,-0.000106815,0.0000434,-2.462192066,0.014352884,neg,ns,0.955208798,Rasa1,Rasa1_Exon,13,85226956,85227005,85227004,85227005,50,-,TTAAATTCACTGTACTCTTCTTCTGGCATGATTTTTTCCATAGAGTATCG,"Exon (Rasa1-201/Rasa1, exon 16 of 25)",13,85214780,85289029,74250,2,Rasa1-201,62024,Ccnh-203;Rasa1-201;Rasa1-210;Rasa1-206;Rasa1-207;Rasa1-208;Rasa1-203,Ccnh;Rasa1;Rasa1;Rasa1;Rasa1;Rasa1;Rasa1,24555;0;0;0;0;4041;3447,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,218397,ENSMUSG00000021549,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27815,cg04207821,-0.0000332,0.0000108,-3.089249938,0.002188394,loss,ns,0.0000217,0.0000183,1.18672342,0.236245375,pos,ns,-0.015461799,0.005350581,-2.889742275,0.00412747,neg,ns,2.38431605,0.000382913,0.000184006,2.08097985,0.038256387,pos,ns,0.643607844,Esrrg,Esrrg_Intron,1,188036143,188036192,188036191,188036192,50,+,ACCCTGTCTCTGTAAAGTAGTCATGTTTTCTCAAATCACACGTTGCACCG,"Intron (Esrrg-204/Esrrg, intron 3 of 3)",1,187608791,188043502,434712,1,Esrrg-204,427352,Esrrg-204;Esrrg-203;Esrrg-201;Esrrg-202,Esrrg;Esrrg;Esrrg;Esrrg,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,60,26381,ENSMUSG00000026610,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
783,cg03481781,-0.0000581,0.00000941,-6.174955878,2.07E-09,loss,yes,0.000019,0.000016,1.186719532,0.236246907,pos,ns,0.006017547,0.004681807,1.285304368,0.199645343,pos,ns,0.699740815,-0.00042772,0.000161007,-2.656530019,0.008303597,neg,ns,0.525945848,Slc1a3,Slc1a3_Promoter,15,8717333,8717382,8717381,8717382,50,-,AGTAATTATAATTTAAAAGCACACAGCTCAAAGTTGCCATCACAGAAACG,Promoter (6-7kb),15,8634124,8710764,76641,2,Slc1a3-201,-6618,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,2,20512,ENSMUSG00000005360,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2570,cg26768041,0.00000198,0.00000348,0.569187291,0.569641209,gain,ns,0.00000702,0.00000591,1.18664831,0.236274969,pos,ns,0.00011226,0.001732276,0.0648049,0.948371109,pos,ns,0.023021685,-0.0000265,0.0000596,-0.445639356,0.656168836,neg,ns,0.937637249,Usp54,Usp54_Exon,14,20591471,20591520,20591519,20591520,50,+,GCACTTACAAAGCACTCTGCAGCATCATCCATAATTCCCAGCTGGAAACG,"Exon (Usp54-202/Usp54, exon 4 of 21)",14,20548912,20618354,69443,2,Usp54-202,26834,Usp54-202;Usp54-201;Usp54-205;Usp54-204,Usp54;Usp54;Usp54;Usp54,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,9,78787,ENSMUSG00000034235,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19529,cg24092893,0.00000827,0.0000117,0.703763128,0.482108565,gain,ns,0.0000237,0.00002,1.186599598,0.236294164,pos,ns,0.013481602,0.005847107,2.305687697,0.0217879,pos,ns,1.661784634,-0.000324806,0.000201082,-1.615295367,0.107264008,neg,ns,0.557515162,Gm12687,Gm12687_Intergenic_downstream,4,99574282,99574331,99574330,99574331,50,+,ATAAATCTATCAAAGAGTAATAGAATTCCATCAATCCTGCATCATCCCCG,Distal Intergenic,4,99615817,99616522,706,2,Gm12687-201,42191,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,7,100417847,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22229,cg19694311,0.0000411,0.0000304,1.352434683,0.177222001,gain,ns,0.0000613,0.0000517,1.186417023,0.236366115,pos,ns,0.000118204,0.015132633,0.007811178,0.993772669,pos,ns,0.002712951,0.000626339,0.00052041,1.203549033,0.229682189,pos,ns,0.564800776,Cryba4,Cryba4_Intergenic_downstream,5,112098763,112098812,112098811,112098812,50,-,TCATTTTCTGAGGCCTGCAAGTCAGCCAGGAAATAGCTATTATTCCATCG,Distal Intergenic,5,112246494,112251162,4669,2,Cryba4-202,152399,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,8,12959,ENSMUSG00000066975,mapped to different genes,5,112098700,112098855,156,*,156,13,0.525641026,1.207142857,0.083333333,3.25E-09,CpGisland,TRUE,U15,NS
8168,cg25686785,-0.0000169,0.00000595,-2.833821631,0.00490119,loss,ns,0.000012,0.0000101,1.18633333,0.236399103,pos,ns,0.000920421,0.002960884,0.310860254,0.756115778,pos,ns,0.1214117,-0.0000607,0.000101825,-0.595774351,0.551760699,neg,ns,0.789702964,Pax2,Pax2_Intron,19,44817397,44817446,44817445,44817446,50,-,CAGTCATTTTTCCCCCTGAAACTCGGAGCAGGGCCCATAAAGCAAATCCG,"Intron (Pax2-203/Pax2, intron 6 of 9)",19,44756045,44837851,81807,1,Pax2-203,61352,Pax2-203;Pax2-201;Pax2-202,Pax2;Pax2;Pax2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,35,166,18504,ENSMUSG00000004231,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2775,cg07273430,0.00000237,0.0000017,1.391824092,0.164973462,gain,ns,-0.00000343,0.00000289,-1.18630966,0.236408433,neg,ns,0.000549071,0.000845958,0.649051728,0.516785498,pos,ns,0.286689682,-0.0000168,0.0000291,-0.57693126,0.564404601,neg,ns,0.043088876,Prdm13,Prdm13_Promoter,4,21688379,21688428,21688427,21688428,50,-,TCAGCCTTATTCAAAGACAATGTTGAGACTCAATCAAAACATTCCACTCG,Promoter (2-3kb),4,21677480,21685963,8484,2,Prdm13-205,-2465,Prdm13-205;Prdm13-201;Prdm13-202;Prdm13-203;Prdm13-206;Prdm13-204,Prdm13;Prdm13;Prdm13;Prdm13;Prdm13;Prdm13,0;0;0;0;0;-2534,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,19,23,230025,ENSMUSG00000040478,conserved gene and region,4,21688427,21689258,832,*,832,103,0.730769231,0.930547713,0.123798077,1.05E-88,CpGisland,TRUE,U3,Pr-B
12980,cg13087210,0.0000331,0.0000122,2.71368979,0.007026043,gain,ns,0.0000246,0.0000207,1.186279678,0.236420252,pos,ns,0.021118425,0.006077695,3.474742757,0.000584214,pos,ns,3.233428227,-0.000478315,0.000209011,-2.288464099,0.022783129,neg,ns,0.843971746,Khdrbs3,Khdrbs3_Exon,15,69013388,69013437,69013388,69013389,50,+,CGTGGCAATTCTCTGAAGCGTTTACAAGAAGAAACCTTGACAAAAATGTC,"Exon (Khdrbs3-201/Khdrbs3, exon 3 of 9)",15,68928420,69093512,165093,1,Khdrbs3-201,84968,Khdrbs3-201;Khdrbs3-204;Khdrbs3-206;Khdrbs3-202;Khdrbs3-205,Khdrbs3;Khdrbs3;Khdrbs3;Khdrbs3;Khdrbs3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,5,13992,ENSMUSG00000022332,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4580,cg06257833,0.0000961,0.00000976,9.851722339,4.24E-20,gain,yes,-0.0000197,0.0000166,-1.186269627,0.236424214,neg,ns,0.015269151,0.004857001,3.143740716,0.001829495,pos,ns,2.737668703,-0.000467995,0.000167032,-2.801828173,0.005401012,neg,ns,0.480372603,Urm1,Urm1_Intergenic_downstream,2,29846383,29846432,29846383,29846384,50,+,CGGCTGCAATTGGTACTGGATTTGAATAACGCCACGGGGCCATCAATGGT,Distal Intergenic,2,29841648,29844064,2417,1,Urm1-202,4735,Urm1-205;Urm1-206;Urm1-201;Urm1-204;Urm1-202,Urm1;Urm1;Urm1;Urm1;Urm1,26308;19041;19041;19022;4735,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,10,68205,ENSMUSG00000069020,mapped to different genes,2,29846021,29846498,478,*,478,42,0.688284519,0.749440048,0.087866109,1.04E-29,CpGisland,TRUE,NA,NRS
8772,cg08897780,0.00000363,0.0000111,0.325814679,0.744784389,gain,ns,0.0000224,0.0000189,1.186031811,0.236517975,pos,ns,-0.004565176,0.005538583,-0.824249807,0.410431354,neg,ns,0.38675947,0.000248601,0.000190471,1.305186845,0.192797151,pos,ns,0.708773673,Fgf8,Fgf8_Intergenic_downstream,19,45735348,45735397,45735348,45735349,50,+,CGTTTCCTGGACGGTCCCTTCATTTGCATGGCATCAGAAGCTGCTCAGAA,Downstream (1-2kb),19,45736971,45742684,5714,2,Fgf8-203,7287,Fgf8-201;Fgf8-206;Fgf8-202;Fgf8-205;Fgf8-203;Fgf8-204,Fgf8;Fgf8;Fgf8;Fgf8;Fgf8;Fgf8,0;0;0;0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,7,18,14179,ENSMUSG00000025219,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
22411,cg16816020,0.0000507,0.00000847,5.981215046,6.10E-09,gain,yes,-0.0000171,0.0000144,-1.185847461,0.236590675,neg,ns,0.001896266,0.004215413,0.449841181,0.653139347,pos,ns,0.184994152,-0.0000361,0.000144968,-0.249075661,0.803467199,neg,ns,0.731954962,Trabd2b,Trabd2b_Intron,4,114423180,114423229,114423180,114423181,50,+,CGTCAGCTCTGACGGCACCCAAGCTGATTTGTTTATGAGAAAAGTAAATA,"Intron (Trabd2b-201/Trabd2b, intron 2 of 6)",4,114406724,114615098,208375,1,Trabd2b-201,16456,Trabd2b-201,Trabd2b,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,5,666048,ENSMUSG00000070867,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10567,cg07548828,0.0000219,0.00000481,4.542525004,0.00000797,gain,ns,-0.00000969,0.00000817,-1.185754041,0.236627522,neg,ns,-0.000339714,0.0023947,-0.141860925,0.887282007,neg,ns,0.051938325,-0.0000838,0.0000824,-1.017287353,0.309810029,neg,ns,0.745299511,Mmp14,Mmp14_Exon,14,54438754,54438803,54438802,54438803,50,+,TATGGGCCCAACATCTGTGACGGGAACTTTGACACCGTGGCCATGCTCCG,"Exon (Mmp14-201/Mmp14, exon 6 of 10)",14,54431612,54441265,9654,1,Mmp14-201,7142,Mmp14-201;Mmp14-203;Mmp14-206;Mmp14-204;Mmp14-202;Mmp14-207,Mmp14;Mmp14;Mmp14;Mmp14;Mmp14;Mmp14,0;7131;0;7090;6318;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,17387,ENSMUSG00000000957,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27378,cg19265518,0.0000332,0.00000313,10.63907482,9.70E-23,gain,yes,-0.0000063,0.00000531,-1.185751395,0.236628566,neg,ns,0.002411315,0.001555418,1.550268514,0.12209735,pos,ns,0.913293761,-0.000112602,0.0000535,-2.105068083,0.036089812,neg,ns,0.076438608,Zmynd8,Zmynd8_fiveUTR,2,165884820,165884869,165884820,165884821,50,+,CGGGTGAGCAAGAGCCATCCTGTGCATAGAAAAAGACAGGCTAAGCTAGG,Promoter (<=1kb),2,165785519,165884874,99356,2,Zmynd8-202,5,Zmynd8-221;Zmynd8-203;Zmynd8-220;Zmynd8-201;Zmynd8-218;Zmynd8-202;Zmynd8-204;Zmynd8-209;Zmynd8-213;Zmynd8-216;Zmynd8-207;Zmynd8-214,Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8,0;0;0;0;0;0;0;0;-4918;-610;-581;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,12,228880,ENSMUSG00000039671,conserved gene and region,2,165884700,165884821,122,*,122,10,0.565573771,1.026936027,0.081967213,0.000000423,CpGisland,TRUE,U6,En-Sp
7748,cg20525364,0.0000337,0.00000988,3.414598939,0.000723774,gain,ns,-0.0000199,0.0000168,-1.185184171,0.23685238,neg,ns,0.007637615,0.004915714,1.553714262,0.121272877,pos,ns,0.916236321,-0.000244949,0.000169051,-1.448963818,0.148358461,neg,ns,0.774497197,Arhgap15,Arhgap15_Intron,2,44081335,44081384,44081335,44081336,50,-,CGGATGGAAGCACATTACTGTCTCTTGGATTGGGCGCATTAACACTTTAA,"Intron (Arhgap15-203/Arhgap15, intron 8 of 14)",2,43748824,44395953,647130,1,Arhgap15-203,332511,Arhgap15-203;Arhgap15-202;Arhgap15-201;Arhgap15-204,Arhgap15;Arhgap15;Arhgap15;Arhgap15,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,72,78,76117,ENSMUSG00000049744,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18908,cg20843173,-0.0000692,0.000013,-5.316089174,0.000000203,loss,yes,0.0000262,0.0000221,1.185089392,0.236889792,pos,ns,-0.003717463,0.00647819,-0.573842736,0.566490322,neg,ns,0.246807505,-0.000202795,0.000222784,-0.910273031,0.363385756,neg,ns,0.76576922,Dach1,Dach1_Intron,14,97868663,97868712,97868663,97868664,50,+,CGCAGATGGGCTGAGAAAAACACGATTCATAAATCCTTAACTGCCTGAGA,"Intron (Dach1-201/Dach1, intron 6 of 10)",14,97786853,98169543,382691,2,Dach1-201,300831,Dach1-201;Dach1-202;Dach1-203,Dach1;Dach1;Dach1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,76,13134,ENSMUSG00000055639,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25394,cg22365081,0.00000156,0.00000257,0.605282911,0.545433875,gain,ns,-0.00000518,0.00000437,-1.185056229,0.236902883,neg,ns,-0.000257357,0.001279701,-0.201107199,0.84074664,neg,ns,0.07533486,-0.0000492,0.000044,-1.11822423,0.26433703,neg,ns,0.94332,Gm9341,Gm9341_Intergenic_downstream,7,136208904,136208953,136208952,136208953,50,+,TCTACTTGGGCTTTTCTAATGAGATAAAATTCCCCCTTCTCCCCATTTCG,Distal Intergenic,7,135952798,135953783,986,1,Gm9341-201,256106,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,27,28,668764,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10118,cg10295572,0.0000951,0.00000996,9.544156456,4.28E-19,gain,yes,-0.0000201,0.0000169,-1.18499525,0.236926957,neg,ns,0.01774649,0.004959581,3.578223711,0.000401288,pos,ns,3.396543583,-0.000443283,0.00017056,-2.598994804,0.009796757,neg,ns,0.204959818,Gm28308,Gm28308_Intron,6,52194873,52194922,52194873,52194874,50,-,CGCACTGACCTGAAGTTCACCTCGGCCTTGGACTTTGCGCTTCTAAAAGG,"Intron (Hoxaas3-202/Hoxaas3-202, intron 1 of 2)",6,52163359,52213339,49981,2,Gm28308-201,18417,Gm28308-201;Hoxa3-201;Hoxa3-203;Hoxa4-201,Gm28308;Hoxa3;Hoxa3;Hoxa4,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,46,103,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
10079,cg21071763,-0.0000118,0.00000361,-3.278246716,0.001163242,loss,ns,-0.00000727,0.00000614,-1.184858682,0.236980878,neg,ns,-0.006177835,0.001797971,-3.436004136,0.000670877,neg,ns,3.173357069,0.0000763,0.0000618,1.233267858,0.218410161,pos,ns,0.932455391,Neb,Neb_Exon,2,52163989,52164038,52164037,52164038,50,+,TTGGCCATGGCATTCAGGCCTCTTCCTTTGACTTCCAGTTCCAGGTCTCG,"Exon (Neb-202/Neb, exon 140 of 157)",2,52136647,52338798,202152,2,Neb-202,174760,Neb-202;Neb-201;Neb-203;Neb-213;Neb-214;Neb-205;Neb-210,Neb;Neb;Neb;Neb;Neb;Neb;Neb,0;0;0;0;0;0;-980,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,8,17996,ENSMUSG00000026950,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9511,cg08375848,-0.0000124,0.00000875,-1.412235581,0.15888366,loss,ns,0.0000176,0.0000149,1.184849237,0.236984608,pos,ns,-0.00225681,0.004354048,-0.518324521,0.604601615,neg,ns,0.218530697,-0.000219921,0.000149735,-1.468731353,0.142919661,neg,ns,0.724085167,Enox2,Enox2_Intron,X,49038892,49038941,49038892,49038893,50,-,CGAATAAGATTCTGTGCAGTAGCCAATACAGCTTTTAACTCAAAAGAGAC,"Intron (Enox2-209/Enox2, intron 7 of 12)",20,49009707,49080752,71046,2,Enox2-209,41811,Enox2-209;Enox2-204;Enox2-201;Enox2-203;Enox2-205;Enox2-202,Enox2;Enox2;Enox2;Enox2;Enox2;Enox2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,209224,ENSMUSG00000031109,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15795,cg11487651,0.000054,0.000133989,0.40291251,0.687290309,gain,ns,0.000269703,0.00022763,1.184832534,0.236991203,pos,ns,0.041286305,0.066687767,0.619098625,0.53630608,pos,ns,0.27058728,0.000235312,0.002293387,0.102604554,0.918343168,pos,ns,0.615488294,Mef2c,Mef2c_Intergenic_upstream,13,83485056,83485105,83485104,83485105,50,-,AAGAAAGACATTTAAAATTACTGTACTGACCTACTAAATGCACTTGGGCG,Distal Intergenic,13,83504034,83663343,159310,1,Mef2c-218,-18978,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,41,17260,ENSMUSG00000005583,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4705,cg11797904,0.0000363,0.00000518,7.013457027,1.46E-11,gain,yes,-0.0000104,0.0000088,-1.184828228,0.236992904,neg,ns,0.006635215,0.002577119,2.574663852,0.010497487,pos,ns,1.978914675,-0.000088,0.0000886,-0.992369301,0.321791359,neg,ns,0.066130962,Ctnnd2,Ctnnd2_Intron,15,30173595,30173644,30173595,30173596,50,+,CGATGTTTGGCTAGAACAAAATGGAAAGACTTAGTCATATGCGTCCATGG,"Intron (Ctnnd2-201/Ctnnd2, intron 1 of 22)",15,30172593,31029341,856749,1,Ctnnd2-201,1002,Ctnnd2-201;Ctnnd2-202;Ctnnd2-208;Ctnnd2-203;Ctnnd2-204,Ctnnd2;Ctnnd2;Ctnnd2;Ctnnd2;Ctnnd2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,10,18163,ENSMUSG00000022240,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
24629,cg25107978,-0.0000062,0.00000186,-3.33323218,0.000962458,loss,ns,0.00000374,0.00000316,1.184691657,0.237046837,pos,ns,0.001976067,0.00092605,2.133866369,0.033638335,pos,ns,1.473165509,-0.00005,0.0000318,-1.568913541,0.117688214,neg,ns,0.071807596,Mbd6,Mbd6_fiveUTR,10,127288886,127288935,127288934,127288935,50,-,CATGGGGGCCAGGGGCAGCCCTGGGGATTCCGTTCCCAGAAGGCACTGCG,Promoter (<=1kb),10,127281956,127288890,6935,2,Mbd6-201,0,Ddit3-201;Ddit3-203;Ddit3-202;Ddit3-204;Mbd6-203;Mbd6-201;Mbd6-202;Mbd6-205;Mbd6-207;Mbd6-206,Ddit3;Ddit3;Ddit3;Ddit3;Mbd6;Mbd6;Mbd6;Mbd6;Mbd6;Mbd6,-1839;-1858;-1859;-1894;0;0;0;0;-4515;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,6,110962,ENSMUSG00000025409,conserved gene but different region,10,127288684,127289094,411,*,411,60,0.798053528,0.917410714,0.145985402,5.92E-57,CpGisland,TRUE,U1,Pr-A
11941,cg15656474,0.00000324,0.00000225,1.440485003,0.150739423,gain,ns,-0.00000453,0.00000382,-1.184596218,0.237084532,neg,ns,-0.001091438,0.001120316,-0.974223297,0.330705257,neg,ns,0.480558901,0.00000654,0.0000385,0.169747526,0.865319415,pos,ns,0.946551966,Gm47241,Gm47241_Promoter,9,61760895,61760944,61760943,61760944,50,+,ATGCTCAGCAATCATGTGTTTAAAAAGCAATAAGACTAAATGCTTTCCCG,Promoter (2-3kb),9,61763084,61763442,359,1,Gm47241-201,-2140,Gm47241-201,Gm47241,-2140,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,6,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8900,cg26233956,0.00000861,0.00000326,2.639967442,0.008710938,gain,ns,-0.00000657,0.00000554,-1.184556345,0.237100281,neg,ns,0.004873581,0.001623936,3.001092035,0.002908616,pos,ns,2.536313578,-0.000150828,0.0000558,-2.700738289,0.007298879,neg,ns,0.068290159,Helt,Helt_fiveUTR,8,46294613,46294662,46294613,46294614,50,-,CGAGTGCGTTTTAAAGCCTGTCCAGAGTCATTAAAGTAATTAAGTAAGCC,Promoter (<=1kb),8,46292039,46294671,2633,2,Helt-201,9,Helt-201;Helt-202;Helt-203,Helt;Helt;Helt,0;-624;-1278,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,7,22,234219,ENSMUSG00000047171,conserved gene but different region,8,46294426,46294620,195,*,195,22,0.666666667,1.016346837,0.112820513,2.64E-18,CpGisland,TRUE,U13,Hc-P
6673,cg12533321,-0.0000216,0.00000424,-5.094489486,0.000000609,loss,yes,0.00000853,0.0000072,1.184506522,0.237119962,pos,ns,-0.000738064,0.002108517,-0.350039442,0.726546799,neg,ns,0.138736406,0.0000279,0.0000725,0.384342128,0.700988397,pos,ns,0.920607249,Dennd1a,Dennd1a_Intron,2,37981847,37981896,37981895,37981896,50,+,TGTGGTCTATTTTGATCAAGATTCTCAATGTCAAACAAACAGGTTTTTCG,"Intron (Dennd1a-201/Dennd1a, intron 11 of 21)",2,37798991,38287375,488385,2,Dennd1a-201,305479,Dennd1a-201;Dennd1a-207;Dennd1a-210;Dennd1a-204,Dennd1a;Dennd1a;Dennd1a;Dennd1a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,46,227801,ENSMUSG00000035392,conserved gene and region,2,37981895,37981983,89,*,89,9,0.505617978,1.583003953,0.101123596,0.000000335,CpGisland,TRUE,U11,Tr-P
3928,cg20169475,0.0000586,0.0000111,5.268789697,0.000000258,gain,yes,-0.0000224,0.0000189,-1.184348098,0.23718255,neg,ns,0.019484405,0.005537773,3.518455147,0.000499044,pos,ns,3.301861544,-0.000581326,0.000190444,-3.052484936,0.002466041,neg,ns,0.277199354,5730522E02Rik,5730522E02Rik_Intron,11,25814628,25814677,25814628,25814629,50,-,CGAGCAGGAACTCAGAAAATCAATACCACTTCATGAGCCAGGTCTTGGTC,"Intron (5730522E02Rik-202/5730522E02Rik, intron 2 of 5)",11,25617668,26210569,592902,2,5730522E02Rik-202,395892,5730522E02Rik-202;5730522E02Rik-201,5730522E02Rik;5730522E02Rik,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,90,70626,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13510,cg03370924,-0.00000232,0.00000247,-0.938891676,0.348517313,loss,ns,-0.00000498,0.0000042,-1.184285937,0.237207111,neg,ns,-0.001029641,0.001230803,-0.836560912,0.403483816,neg,ns,0.394173881,-0.00000265,0.0000423,-0.062514698,0.950193245,neg,ns,0.943761425,Derl2,Derl2_threeUTR,11,71014581,71014630,71014629,71014630,50,-,AATACAAAGTCTGCTGTCCGACCTCGGAAAGAGCCTTCTTCTAGCATTCG,3' UTR,11,71007164,71019242,12079,2,Derl2-202,4612,Derl2-202;Derl2-206;Derl2-207;Derl2-201;Derl2-205;Derl2-204;Derl2-203;Mis12-202;Mis12-206;Mis12-201,Derl2;Derl2;Derl2;Derl2;Derl2;Derl2;Derl2;Mis12;Mis12;Mis12,0;0;0;0;0;0;0;-4981;-4981;-4981,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,2,116891,ENSMUSG00000018442,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15144,cg00192066,-0.0000771,0.0000136,-5.683229797,3.05E-08,loss,yes,0.0000273,0.000023,1.184263752,0.237215877,pos,ns,-0.009505758,0.006751741,-1.407897371,0.160163454,neg,ns,0.795436574,-0.000344759,0.000232192,-1.484804099,0.138611845,neg,ns,0.757432901,Smad1,Smad1_Intron,8,79382027,79382076,79382075,79382076,50,-,AAACATCTTTACAAGTTATATCCTTTTACAAACCAACATATGGTCTCACG,"Intron (Smad1-202/Smad1, intron 1 of 6)",8,79338395,79399518,61124,2,Smad1-202,17442,Smad1-202;Smad1-203;Smad1-201,Smad1;Smad1;Smad1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,17125,ENSMUSG00000031681,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
121,cg13742657,-0.000000172,0.00000212,-0.08138971,0.935184554,loss,ns,0.00000426,0.0000036,1.184139478,0.237264986,pos,ns,0.003028365,0.001053916,2.873440378,0.004340652,pos,ns,2.362445006,-0.000101815,0.0000362,-2.809145287,0.005282785,neg,ns,0.952263488,Ncoa1,Ncoa1_Exon,12,4297555,4297604,4297555,4297556,50,-,CGCTAAGCATTGTCCCATCATTCAATATGAATCTATAGGAGGGGCTGGAG,"Exon (Ncoa1-201/Ncoa1, exon 11 of 23)",12,4247362,4477182,229821,2,Ncoa1-201,179578,Ncoa1-201;Ncoa1-209;Ncoa1-203;Ncoa1-202;Ncoa1-206,Ncoa1;Ncoa1;Ncoa1;Ncoa1;Ncoa1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,3,17977,ENSMUSG00000020647,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20962,cg25242595,0.000117564,0.0000139,8.452915762,1.13E-15,gain,yes,-0.000028,0.0000236,-1.183958719,0.237336429,neg,ns,0.018686707,0.0069222,2.699533098,0.007324748,pos,ns,2.135207333,-0.000613262,0.000238054,-2.57614659,0.010453535,neg,ns,0.218675016,Papola,Papola_Intergenic_downstream,12,105875185,105875234,105875233,105875234,50,-,TGTCTCTGAGCCTGTCACCGTGATGTCTTCATCTGTAACCAGAGCAGACG,Distal Intergenic,12,105829067,105835499,6433,1,Papola-220,46167,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,8,18789,ENSMUSG00000021111,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
262,cg08368788,0.0000247,0.00000419,5.892334546,9.92E-09,gain,yes,-0.00000843,0.00000712,-1.183903366,0.23735831,neg,ns,0.001025479,0.002086616,0.491455516,0.62345208,pos,ns,0.205196922,-0.000111108,0.0000718,-1.548362916,0.122555195,neg,ns,0.104422888,Ppp1r9a,Ppp1r9a_fiveUTR,6,4903002,4903051,4903050,4903051,50,-,GCGGCCCTAGAGTTAATCCCATCAGCCGAGGTGAGGCACCTGTTACCCCG,Promoter (<=1kb),6,4903018,5160221,257204,1,Ppp1r9a-208,0,Ppp1r9a-205;Ppp1r9a-204;Ppp1r9a-208;Ppp1r9a-201;Ppp1r9a-206;Ppp1r9a-203;Ppp1r9a-211;Ppp1r9a-210;Ppp1r9a-212;Ppp1r9a-209,Ppp1r9a;Ppp1r9a;Ppp1r9a;Ppp1r9a;Ppp1r9a;Ppp1r9a;Ppp1r9a;Ppp1r9a;Ppp1r9a;Ppp1r9a,0;0;0;0;0;0;0;-2365;-2365;-3356,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,3,243725,ENSMUSG00000032827,conserved gene but different region,6,4902882,4903210,329,*,329,33,0.732522796,0.751453488,0.100303951,1.90E-25,CpGisland,TRUE,U1,Pr-A
12748,cg14815794,-0.00000298,0.00000196,-1.520231178,0.129472149,loss,ns,0.00000394,0.00000333,1.183620238,0.237470252,pos,ns,0.002378522,0.000975947,2.437144137,0.015365937,pos,ns,1.813440961,-0.0000809,0.0000336,-2.41162466,0.016462603,neg,ns,0.951372685,Ppp2r2a,Ppp2r2a_Exon,14,67037959,67038008,67038007,67038008,50,+,TTAATTCATTAGTGTTTGTAAAGCACTTTGAGATCCTCAGGTCAAAGGCG,"Exon (Ppp2r2a-205/Ppp2r2a, exon 3 of 7)",14,67014056,67072444,58389,2,Ppp2r2a-201,34436,Ppp2r2a-201;Ppp2r2a-204;Ppp2r2a-203;Ppp2r2a-205,Ppp2r2a;Ppp2r2a;Ppp2r2a;Ppp2r2a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,5,71978,ENSMUSG00000022052,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26929,cg18790636,-0.0000579,0.00000845,-6.848753588,4.01E-11,loss,yes,-0.000017,0.0000144,-1.183569198,0.237490436,neg,ns,-0.004735917,0.004206213,-1.125933505,0.261064561,neg,ns,0.583252079,0.0000176,0.000144651,0.12188864,0.903066186,pos,ns,0.889156714,Ttc34,Ttc34_Intergenic_upstream,4,154771729,154771778,154771729,154771730,50,-,CGTATTCCAAACAAATTAAGTACAATTAAGGACTCTGAGTTATGGGTATC,Distal Intergenic,4,154837459,154867125,29667,1,Ttc34-203,-65730,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,6,242800,ENSMUSG00000046637,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19497,cg23019001,0.0000282,0.00000887,3.177237702,0.001636709,gain,ns,-0.0000178,0.0000151,-1.183461077,0.237533197,neg,ns,0.014580863,0.004413024,3.30405223,0.001064603,pos,ns,2.972812443,0.0000607,0.000151764,0.399758505,0.689609692,pos,ns,0.787291103,Foxn3,Foxn3_Intron,12,99457989,99458038,99458037,99458038,50,-,AGCTACTATTTCTGCAACTGTGTCACTGTAGATAGTCTGAAACATGTACG,"Intron (Foxn3-205/Foxn3, intron 1 of 2)",12,99388345,99563508,175164,2,Foxn3-205,105470,Foxn3-205;Foxn3-214;Foxn3-213;Foxn3-210,Foxn3;Foxn3;Foxn3;Foxn3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,17,71375,ENSMUSG00000033713,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
11812,cg25563325,-0.0000021,0.00000154,-1.366118219,0.172892047,loss,ns,-0.00000309,0.00000261,-1.183300527,0.237596703,neg,ns,0.001008581,0.000765066,1.318292018,0.188379114,pos,ns,0.72496725,-0.0000577,0.0000263,-2.193624554,0.02900464,neg,ns,0.083636347,Grk5,Grk5_fiveUTR,19,60890571,60890620,60890571,60890572,50,-,CGACTGTCAATGGAGCTGGAAAACATCGTGGCCAACACGGTCTTGCTGAA,Promoter (<=1kb),19,60889749,61095968,206220,1,Grk5-201,822,Grk5-201;Grk5-202;Grk5-203,Grk5;Grk5;Grk5,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,2,14773,ENSMUSG00000003228,conserved gene and region,19,60890387,60890736,350,*,350,36,0.668571429,0.951086957,0.102857143,3.90E-28,CpGisland,TRUE,NA,NRS
24931,cg25710068,-0.00000872,0.00000413,-2.109486385,0.03570404,loss,ns,0.00000831,0.00000702,1.183245235,0.237618576,pos,ns,0.000272581,0.002056481,0.132547518,0.894637233,pos,ns,0.048353031,0.0000674,0.0000707,0.953309984,0.341175764,pos,ns,0.944666378,Diaph2,Diaph2_Intron,X,129876342,129876391,129876342,129876343,50,-,CGTAATAGATGAAATGGAAAGTAATTATGTTAATGTTGACTCATTATGAA,"Intron (Diaph2-203/Diaph2, intron 4 of 22)",20,129749742,130180471,430730,1,Diaph2-203,126600,Diaph2-203;Diaph2-207;Diaph2-205;Diaph2-201;Diaph2-206;Diaph2-202,Diaph2;Diaph2;Diaph2;Diaph2;Diaph2;Diaph2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,54004,ENSMUSG00000034480,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18999,cg17973463,0.00000251,0.00000297,0.843885379,0.399384179,gain,ns,0.00000597,0.00000505,1.183159497,0.237652498,pos,ns,0.003007325,0.001478984,2.033371834,0.042866494,pos,ns,1.367882036,-0.0000956,0.0000509,-1.879045844,0.061176295,neg,ns,0.944213933,Med1,Med1_Exon,11,98157618,98157667,98157666,98157667,50,-,GAAAGGATGTCAGTTACATCTGGGCCAATGCTGTCTGAACTGGATAGTCG,"Exon (Med1-203/Med1, exon 17 of 17)",11,98152154,98193260,41107,2,Med1-202,35593,Med1-202;Med1-203;Med1-204;Med1-201;Med1-207,Med1;Med1;Med1;Med1;Med1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,13,19014,ENSMUSG00000018160,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3195,cg13517739,-0.00000387,0.0000041,-0.944382713,0.345709563,loss,ns,-0.00000824,0.00000697,-1.183146651,0.23765758,neg,ns,0.003944422,0.002041261,1.932345825,0.054227708,pos,ns,1.265778751,-0.000271363,0.0000702,-3.865642804,0.000134992,neg,ns,0.909347841,Gm11888,Gm11888_Intergenic_upstream,4,23173922,23173971,23173922,23173923,50,-,CGTTGATTGGTACAAATTAAAAGATCATTTATTAGTGATTATGCTGTATA,Distal Intergenic,4,23484820,23486020,1201,1,Gm11888-201,-310898,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,14,625462,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10698,cg18010237,0.00000424,0.00000173,2.446644911,0.014974466,gain,ns,-0.00000348,0.00000295,-1.182968011,0.237728269,neg,ns,0.001585385,0.000863057,1.836941466,0.067175733,pos,ns,1.172787586,-0.0000757,0.0000297,-2.549751161,0.011261065,neg,ns,0.067912769,Zfp608,Zfp608_Intron,18,54990402,54990451,54990402,54990403,50,-,CGGGATAAATTAGTGAAAGGGAAGAAAGAATAAGAAGAAAGGACTGAAAA,"Intron (Gm4221-203/Gm4221-203, intron 1 of 1)",18,54888723,54992555,103833,2,Zfp608-203,2104,Zfp608-201;Zfp608-203,Zfp608;Zfp608,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,32,269023,ENSMUSG00000052713,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
11084,cg12249575,0.0000468,0.00000609,7.685150766,2.03E-13,gain,yes,0.0000122,0.0000103,1.18296301,0.237730248,pos,ns,0.006707397,0.003029485,2.214039101,0.027553524,pos,ns,1.559822845,-0.0000594,0.000104184,-0.5703371,0.568862218,neg,ns,0.12697788,Nkx2-1,Nkx2-1_Exon,12,56535305,56535354,56535305,56535306,50,-,CGGGGCGTAAGCGCTAAAGCAACAAGACAATAGAAGCCTACATCTTGCCC,"Exon (Gm26973-202/Gm26973-202, exon 1 of 3)",12,56531958,56536908,4951,2,Nkx2-1-201,1554,Nkx2-1-202;Nkx2-1-201,Nkx2-1;Nkx2-1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,29,21869,ENSMUSG00000001496,mapped to different genes,12,56535178,56535355,178,*,178,14,0.573033708,0.967391304,0.078651685,1.48E-09,CpGisland,TRUE,U13,Hc-P
13967,cg14460924,-0.00000246,0.00000304,-0.807746137,0.419856103,loss,ns,0.00000612,0.00000517,1.182931326,0.237742787,pos,ns,-0.000528776,0.00151484,-0.34906394,0.727278284,neg,ns,0.13829938,-0.0000418,0.0000521,-0.803267619,0.422435529,neg,ns,0.945665731,Robo2,Robo2_Exon,16,73906847,73906896,73906895,73906896,50,-,TAAAACCAGCTTTATCTGCTGCTGCCACCAGTGCTTGTGCAAAACTGCCG,"Exon (Robo2-204/Robo2, exon 1 of 3)",16,73891839,74410989,519151,2,Robo2-203,504093,Robo2-203;Robo2-213;Robo2-210;Robo2-202;Robo2-204;Robo2-212,Robo2;Robo2;Robo2;Robo2;Robo2;Robo2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,11,268902,ENSMUSG00000052516,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5091,cg07250917,-0.00000223,0.00000192,-1.162073611,0.246099451,loss,ns,-0.00000386,0.00000326,-1.182836225,0.237780427,neg,ns,0.000834934,0.000955321,0.87398247,0.382804347,pos,ns,0.417023139,-0.0000537,0.0000329,-1.633839343,0.103307713,neg,ns,0.951590256,Nprl3,Nprl3_threeUTR,11,32255434,32255483,32255482,32255483,50,+,CATACCTGCCCCAGAGCATGCTGTAGCAGTGTTGGGTGCCCAACAAATCG,3' UTR,11,32225628,32267689,42062,2,Nprl3-205,12206,Nprl3-205;Nprl3-203;Nprl3-213;Nprl3-201;Nprl3-211;Nprl3-212;Nprl3-202;Nprl3-214;Nprl3-216;Nprl3-208,Nprl3;Nprl3;Nprl3;Nprl3;Nprl3;Nprl3;Nprl3;Nprl3;Nprl3;Nprl3,0;0;0;0;0;0;0;-1375;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,2,17168,ENSMUSG00000020289,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U5,En-Sd
1900,cg26941966,-0.00000796,0.00000579,-1.373710686,0.170524062,loss,ns,-0.0000116,0.00000984,-1.182746886,0.23781579,neg,ns,-0.002222673,0.002882933,-0.770976464,0.441308099,neg,ns,0.355258102,-0.000190421,0.0000991,-1.92065351,0.055692508,neg,ns,0.829259973,Gm43991,Gm43991_Intergenic_upstream,6,16152823,16152872,16152823,16152824,50,+,CGTACCTAATTGATGAACATCTGGTGGCAGGTAGCCAGCCCATTAAAAAT,Distal Intergenic,6,16089686,16089959,274,2,Gm43991-201,-62864,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17721,cg16232431,-0.0000169,0.0000069,-2.444679233,0.015054728,loss,ns,-0.0000139,0.0000117,-1.182715188,0.237828338,neg,ns,-0.007910357,0.003436274,-2.302015569,0.021996838,neg,ns,1.657639741,0.0000324,0.000118173,0.274243755,0.78407996,pos,ns,0.714449054,Lrp4,Lrp4_Exon,2,91485740,91485789,91485740,91485741,50,-,CGGCCTTTGATCAGGTCTTGACAAGTTCCTGCTTTTTGCCCGAAGGATGG,"Exon (Lrp4-201/Lrp4, exon 17 of 38)",2,91457511,91513779,56269,1,Lrp4-201,28229,Lrp4-201;Lrp4-202,Lrp4;Lrp4,0;9484,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,7,228357,ENSMUSG00000027253,conserved gene but different region,2,91485740,91485897,158,*,158,11,0.588607595,0.803885291,0.069620253,0.000000471,CpGisland,TRUE,NA,NRS
23177,cg01535043,0.0000414,0.00000921,4.500243738,0.00000961,gain,ns,-0.0000185,0.0000156,-1.182700848,0.237834014,neg,ns,0.007226444,0.004581547,1.57729329,0.11574793,pos,ns,0.936486766,-0.000349654,0.000157559,-2.219192156,0.027197335,neg,ns,0.434208378,Rnf220,Rnf220_Intron,4,117391392,117391441,117391440,117391441,50,-,CACAGAGAAGAATTTTGCTTGTTATCAGCCCTGGAAGCCTCTGATAGACG,"Intron (Rnf220-201/Rnf220, intron 2 of 14)",4,117271463,117497052,225590,2,Rnf220-201,105611,Rnf220-201;Rnf220-207,Rnf220;Rnf220,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8918,cg18433461,-7.29E-08,0.00000661,-0.011034666,0.991202887,loss,ns,-0.0000133,0.0000112,-1.182671215,0.237845746,neg,ns,-0.004235239,0.003288716,-1.287809132,0.198772918,neg,ns,0.701642787,0.000124788,0.000113099,1.103352269,0.270729976,pos,ns,0.146218968,Helt,Helt_Promoter,8,46295634,46295683,46295634,46295635,50,-,CGTTTGGGGGCGGGAGAGCGCAGACACTTTGGGCATCAATATTTGTCACT,Promoter (1-2kb),8,46292039,46294671,2633,2,Helt-201,-1012,Helt-201;Helt-202;Helt-203,Helt;Helt;Helt,0;-1645;-2299,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,15,22,234219,ENSMUSG00000047171,conserved gene and region,8,46295615,46295653,39,*,39,6,0.666666667,1.529411765,0.153846154,0.00000642,CpGisland,TRUE,U13,Hc-P
16157,cg23225221,-0.00000249,0.0000021,-1.185613747,0.236682865,loss,ns,-0.00000422,0.00000357,-1.182606261,0.237871461,neg,ns,-0.000182199,0.001044639,-0.174413385,0.861654444,neg,ns,0.064666868,0.0000182,0.0000359,0.507363725,0.612260379,pos,ns,0.940487959,Lin52,Lin52_Intron,12,84541686,84541735,84541734,84541735,50,-,CTGTCAATTACCTCAAATTAATCACCTCCTCGCCTAATTAAGCATTATCG,"Intron (Lin52-202/Lin52, intron 4 of 4)",12,84456248,84546145,89898,1,Lin52-202,85438,Lin52-202;Lin52-204,Lin52;Lin52,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,6,217708,ENSMUSG00000085793,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9350,cg24398532,0.0000305,0.0000115,2.660385695,0.008211262,gain,ns,0.000023,0.0000195,1.182543616,0.237896264,pos,ns,0.003856401,0.005708542,0.675549137,0.499830546,pos,ns,0.301177206,0.000123623,0.000196316,0.62971226,0.52934669,pos,ns,0.666843603,Gm8588,Gm8588_Intergenic_upstream,13,48290564,48290613,48290564,48290565,50,+,CGAACACTGCCAGGCCTCACAGCTTCGCAGCTCATTTGAGAAGCGGAAAT,Distal Intergenic,13,48312670,48314251,1582,1,Gm8588-201,-22057,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,3,667351,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11633,cg03883593,-0.00002,0.00000773,-2.58934102,0.010069612,loss,ns,0.0000155,0.0000131,1.182442042,0.237936484,pos,ns,0.006610829,0.003845176,1.719252638,0.086566588,pos,ns,1.062649699,-0.000310637,0.000132235,-2.349126429,0.019444951,neg,ns,0.858382102,Ptbp3,Ptbp3_Exon,4,59517635,59517684,59517683,59517684,50,+,AGACCTAATGATATGATCTCTGCTTCGGTGACATCACATGGAATTTTTCG,"Exon (Ptbp3-201/Ptbp3, exon 3 of 14)",4,59471868,59549364,77497,2,Ptbp3-201,31680,Ptbp3-201;Ptbp3-212;Ptbp3-202;Ptbp3-210;Ptbp3-208;Ptbp3-205;Ptbp3-213;Ptbp3-203;Ptbp3-211;Ptbp3-206;Ptbp3-204,Ptbp3;Ptbp3;Ptbp3;Ptbp3;Ptbp3;Ptbp3;Ptbp3;Ptbp3;Ptbp3;Ptbp3;Ptbp3,0;0;0;0;0;0;0;0;0;-3287;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,5,230257,ENSMUSG00000028382,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6432,cg08014701,0.0000361,0.0000038,9.485929431,6.60E-19,gain,yes,-0.00000764,0.00000646,-1.182395869,0.237954769,neg,ns,0.00365458,0.001893483,1.93008337,0.054508598,pos,ns,1.263534989,-0.0000543,0.0000651,-0.833847495,0.40500897,neg,ns,0.083781266,Grhl2,Grhl2_fiveUTR,15,37233288,37233337,37233288,37233289,50,-,CGGGCGCTCTCACACACCTTCACCTGCACAGACTTGAAAGTCCAGTTTCA,Promoter (<=1kb),15,37233036,37333647,100612,1,Grhl2-203,252,Grhl2-203;Grhl2-201;Grhl2-204,Grhl2;Grhl2;Grhl2,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,6,8,252973,ENSMUSG00000022286,conserved gene and region,15,37233199,37233293,95,*,95,10,0.642105263,1.158536585,0.105263158,3.77E-08,CpGisland,TRUE,U3,Pr-B
1067,cg18158391,0.0000152,0.00000284,5.357269133,0.000000165,gain,yes,0.00000571,0.00000483,1.182128363,0.238060721,pos,ns,0.003199965,0.001415029,2.261412213,0.024426412,pos,ns,1.612140321,-0.0000174,0.0000487,-0.356864987,0.721435674,neg,ns,0.067166918,Vsnl1,Vsnl1_fiveUTR,12,11436556,11436605,11436556,11436557,50,-,CGGGTAAATCTCTGCTGCAGATTGGGAATCCCATAGAAAACCTAGGGTCC,Promoter (<=1kb),12,11325242,11436613,111372,2,Vsnl1-201,8,Vsnl1-202;Vsnl1-201,Vsnl1;Vsnl1,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,6,26950,ENSMUSG00000054459,conserved gene and region,12,11436443,11436557,115,*,115,10,0.6,0.99137931,0.086956522,0.000000242,CpGisland,TRUE,U3,Pr-B
17363,cg13664524,-0.00000158,0.00000468,-0.337532927,0.735943629,loss,ns,-0.00000939,0.00000794,-1.182088603,0.238076472,neg,ns,-0.003893505,0.002327342,-1.672940675,0.095347777,neg,ns,1.02068943,0.0000813,0.00008,1.015222366,0.310791536,pos,ns,0.893208723,Agap1,Agap1_Intron,1,89848806,89848855,89848854,89848855,50,+,TTAAATATGTCCGGCAGCAATTACTGTGACCTCCCGCTTGTCAAGGTCCG,"Intron (Agap1-201/Agap1, intron 16 of 17)",1,89454806,89897617,442812,1,Agap1-201,394000,Agap1-201;Agap1-204;Agap1-202,Agap1;Agap1;Agap1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,29,347722,ENSMUSG00000055013,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26177,cg19347694,-0.00000503,0.00000429,-1.171386006,0.242343205,loss,ns,0.00000862,0.00000729,1.182069278,0.238084128,pos,ns,0.003991582,0.002136284,1.868469757,0.062639692,pos,ns,1.203150383,-0.000159685,0.0000735,-2.173573969,0.030493761,neg,ns,0.888529598,Lmo4,Lmo4_Intergenic_upstream,3,144223928,144223977,144223928,144223929,50,-,CGGAGCCAGGATTAATTAATAGAGATGAAAGGGAAACACTAGACCTTTCT,Distal Intergenic,3,144188530,144205220,16691,2,Lmo4-201,-18757,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,54,16911,ENSMUSG00000028266,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20405,cg06280003,0.0000462,0.0000072,6.417714751,5.18E-10,gain,yes,0.0000145,0.0000122,1.1819478,0.238132257,pos,ns,0.004642509,0.003581719,1.296167968,0.195881752,pos,ns,0.708006021,-0.000129962,0.000123175,-1.055101794,0.292200375,neg,ns,0.094766449,Hoxc4,Hoxc4_Intron,15,103032893,103032942,103032893,103032894,50,-,CGAGACTGATTTATGACGTTTTACAGCCCTATAAAAGCTGTAGCGACGAG,"Intron (Hoxc4-202/Hoxc4, intron 1 of 3)",15,103018934,103036405,17472,1,Hoxc4-202,13959,Hoxc4-202;Hoxc4-201,Hoxc4;Hoxc4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,91,15423,ENSMUSG00000075394,conserved gene and region,15,103032736,103032961,226,*,226,19,0.517699115,1.262198707,0.084070797,2.37E-13,CpGisland,TRUE,U13,Hc-P
16063,cg13394788,-0.00000164,0.00000274,-0.598464618,0.549966975,loss,ns,0.0000055,0.00000465,1.181698921,0.238230883,pos,ns,0.00471712,0.001362756,3.461456601,0.000612682,pos,ns,3.212764682,-0.00013378,0.0000469,-2.854586233,0.004599689,neg,ns,0.941784546,Acaca,Acaca_Intron,11,84331682,84331731,84331730,84331731,50,+,GAATCCTAATCACTGTTTGGAGCATCAGAAATAATGATCACCTCTGATCG,"Intron (Acaca-202/Acaca, intron 41 of 55)",11,84173122,84401651,228530,1,Acaca-202,158560,Acaca-202;Acaca-201,Acaca;Acaca,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,28,28,107476,ENSMUSG00000020532,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24595,cg18019455,0.0000824,0.00000776,10.61463623,1.18E-22,gain,yes,-0.0000156,0.0000132,-1.18147751,0.238318649,neg,ns,0.001081097,0.003861679,0.279955053,0.779698701,pos,ns,0.10807319,-0.00018108,0.000132803,-1.363523563,0.173706922,neg,ns,0.74420583,Agap2,Agap2_Exon,10,127080627,127080676,127080627,127080628,50,+,CGCAAGATGCTCAAGTTTATCAGCGGCATCTTCACCAAGAGCACAGGAGG,"Exon (Agap2-201/Agap2, exon 1 of 19)",10,127075284,127093169,17886,1,Agap2-203,5343,Agap2-203;Agap2-201;Agap2-202,Agap2;Agap2;Agap2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,216439,ENSMUSG00000025422,conserved gene and region,10,127080597,127080651,55,*,55,7,0.636363636,1.266447368,0.127272727,0.00000255,CpGisland,TRUE,NA,NRS
17539,cg12460052,-0.0000179,0.0000055,-3.259234123,0.001241274,loss,ns,-0.000011,0.00000934,-1.181471743,0.238320935,neg,ns,-0.006247997,0.002737597,-2.282292892,0.023149257,neg,ns,1.635462943,-0.0000634,0.0000941,-0.673842131,0.5009138,neg,ns,0.836255385,Fnbp4,Fnbp4_Exon,2,90767837,90767886,90767885,90767886,50,-,TCTGTGCGCTTTACAGGACCTCTGGAAGCAACTACTCCTGATTAACCTCG,"Exon (Fnbp4-202/Fnbp4, exon 11 of 14)",2,90745370,90781021,35652,1,Fnbp4-201,22467,Fnbp4-201;Fnbp4-210;Fnbp4-202;Fnbp4-209;Fnbp4-208;Fnbp4-207;Fnbp4-206;Fnbp4-205,Fnbp4;Fnbp4;Fnbp4;Fnbp4;Fnbp4;Fnbp4;Fnbp4;Fnbp4,0;0;0;0;0;0;-219;-776,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,6,55935,ENSMUSG00000008200,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6558,cg03972287,-0.0000285,0.0000144,-1.982100982,0.048350747,loss,ns,0.0000288,0.0000244,1.181429081,0.238337849,pos,ns,-0.017619392,0.007150412,-2.464108587,0.014277866,neg,ns,1.845336708,0.000198424,0.000245902,0.806922464,0.420329803,pos,ns,0.775272907,Sgcz,Sgcz_Exon,8,37723048,37723097,37723096,37723097,50,+,ATTTCTTTCACATACAATGGAAGTAGAAACTCAGATATACCTTCAAGTCG,"Exon (Sgcz-202/Sgcz, exon 3 of 10)",8,37522298,38661508,1139211,2,Sgcz-202,938411,Sgcz-202;Sgcz-201,Sgcz;Sgcz,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,244431,ENSMUSG00000039539,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
845,cg05575546,0.0000607,0.00000636,9.541272738,4.38E-19,gain,yes,0.0000128,0.0000108,1.181410951,0.238345037,pos,ns,0.010737832,0.003167847,3.389630657,0.000790389,pos,ns,3.102159189,-0.0000502,0.000108942,-0.460507128,0.645475122,neg,ns,0.068149945,Nxph1,Nxph1_Intron,6,8956282,8956331,8956282,8956283,50,-,CGTTTAATGAAAGTGCTCCCCAGATGAATATTACCAGCAATTTCCTGAGT,"Intron (Nxph1-202/Nxph1, intron 2 of 2)",6,8948614,9249032,300419,1,Nxph1-202,7668,Nxph1-203;Nxph1-202;Nxph1-201,Nxph1;Nxph1;Nxph1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,12,18231,ENSMUSG00000046178,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
2818,cg19291109,-0.00000245,0.0000013,-1.879656538,0.061092671,loss,ns,0.00000262,0.00000222,1.181067278,0.238481322,pos,ns,0.001072388,0.000649129,1.652042236,0.099538426,pos,ns,1.002009231,-0.000049,0.0000223,-2.193319639,0.029026805,neg,ns,0.968167446,Reln,Reln_Exon,5,21895204,21895253,21895204,21895205,50,+,CGAGACATAAGCATTCCAGTTCTACAGGAACTAGATCATTAGAGAAAAAG,"Exon (Reln-215/Reln, exon 4 of 4)",5,21884454,22344702,460249,2,Reln-207,449449,Reln-207;Reln-205;Reln-201;Reln-214;Reln-215;Reln-213;Reln-203,Reln;Reln;Reln;Reln;Reln;Reln;Reln,0;0;0;-1308;0;735;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,6,19699,ENSMUSG00000042453,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16969,cg09817427,0.0000655,0.00000654,10.01884217,1.19E-20,gain,yes,-0.0000131,0.0000111,-1.180884062,0.238554,neg,ns,-0.001772289,0.003255937,-0.544325404,0.586608872,neg,ns,0.231651373,0.00050211,0.000111971,4.484274455,0.0000103,pos,ns,0.125400186,Tbx18,Tbx18_fiveUTR,9,87731214,87731263,87731262,87731263,50,+,TAATTGAAATTTGTTGCCTTGATCTGTCAGCACTTCCAGGCAGGAGAGCG,Promoter (<=1kb),9,87702800,87731260,28461,2,Tbx18-201,0,Tbx18-201;Tbx18-202,Tbx18;Tbx18,0;-717,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,2,76365,ENSMUSG00000032419,conserved gene and region,9,87731262,87731433,172,*,172,13,0.552325581,0.992014197,0.075581395,1.09E-08,CpGisland,TRUE,NA,NRS
21992,cg12875966,0.0000642,0.00000552,11.6247276,3.60E-26,gain,yes,-0.0000111,0.00000938,-1.180879085,0.238555974,neg,ns,0.009559364,0.002747106,3.479794058,0.000573719,pos,ns,3.241301052,-0.0000854,0.0000945,-0.903879594,0.366761108,neg,ns,0.111850892,Dmrta2,Dmrta2_Intergenic_downstream,4,109984385,109984434,109984385,109984386,50,-,CGGTTTAATAAAGAAGGGCTTTAATGGGGAACTAATTTGATTGAGTTGCC,Downstream (<1kb),4,109978053,109983687,5635,1,Dmrta2-201,6381,Dmrta2-201,Dmrta2,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,4,13,242620,ENSMUSG00000047143,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
9167,cg06810228,-0.00000775,0.00000361,-2.149519313,0.03236692,loss,ns,-0.00000724,0.00000613,-1.180813817,0.238581868,neg,ns,0.000257686,0.001795214,0.143540562,0.88595654,pos,ns,0.052587582,0.0000325,0.0000617,0.526198933,0.599126242,pos,ns,0.908665145,Gm13471,Gm13471_Intergenic_upstream,2,47334560,47334609,47334560,47334561,50,-,CGTAAATGACTAAGCAAGAGATAACAAAATTACATCTGCACTTGTTTGGC,Distal Intergenic,2,48140146,48140578,433,1,Gm13471-201,-805586,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,9,10,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
96,cg10960724,-0.000016,0.00000262,-6.103526506,3.10E-09,loss,yes,-0.00000525,0.00000445,-1.180807241,0.238584477,neg,ns,0.000332289,0.001303547,0.254911455,0.798960515,pos,ns,0.097474683,-0.0000671,0.0000448,-1.496713801,0.135485158,neg,ns,0.944955541,Crebbp,Crebbp_Exon,16,4084396,4084445,4084444,4084445,50,+,GGCCTGTGGCTGTCCTGAGAGCATGTGTTGCTGGGGGCTCATGGGGTTCG,"Exon (Crebbp-201/Crebbp, exon 31 of 31)",16,4081328,4213997,132670,2,Crebbp-201,129552,Crebbp-201;Crebbp-205;Crebbp-202;Crebbp-206;Crebbp-208,Crebbp;Crebbp;Crebbp;Crebbp;Crebbp,0;0;5298;4150;10199,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,7,12914,ENSMUSG00000022521,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8702,cg12143045,0.000201655,0.0000194,10.38680705,6.97E-22,gain,yes,-0.0000389,0.000033,-1.180670032,0.238638921,neg,ns,0.018289706,0.009662808,1.892794073,0.059316613,pos,ns,1.226823653,-0.000680423,0.000332303,-2.047598096,0.041441861,neg,ns,0.10445912,Gm31907,Gm31907_fiveUTR,18,45559505,45559554,45559553,45559554,50,+,CTGCAGCTTTAACAGCCCTGACATGGAAACCCCATTGCAGTTCCAGCGCG,Promoter (<=1kb),18,45501590,45560130,58541,2,Gm31907-202,576,Gm31907-202;Kcnn2-205;Kcnn2-201;Kcnn2-207;Kcnn2-206;Kcnn2-202;Kcnn2-208;Kcnn2-203,Gm31907;Kcnn2;Kcnn2;Kcnn2;Kcnn2;Kcnn2;Kcnn2;Kcnn2,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,15,15,102634286,NA,mapped to different genes,18,45559551,45559588,38,*,38,7,0.789473684,1.272727273,0.184210526,0.000000159,CpGisland,TRUE,U3,Pr-B
19195,cg01466224,-0.0000157,0.00000355,-4.434629502,0.0000128,loss,ns,0.00000711,0.00000603,1.180558686,0.238683108,pos,ns,-0.000140397,0.001765202,-0.079536075,0.936657557,neg,ns,0.028419159,-0.0000582,0.0000607,-0.958883371,0.33836475,neg,ns,0.907672437,Gm32308,Gm32308_Intergenic_downstream,6,98768322,98768371,98768370,98768371,50,-,ATAACTGGCTAATCTTTTTATTTTATTTCTGAGCCTCCATGCAATAGGCG,Distal Intergenic,6,98757749,98758028,280,1,Gm32308-201,10622,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,10,102634810,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18189,cg09787389,0.00000305,0.00000339,0.89779529,0.369991435,gain,ns,-0.00000681,0.00000577,-1.180485512,0.23871215,neg,ns,-0.002603352,0.001689085,-1.541279772,0.124268838,neg,ns,0.905637762,0.0000195,0.0000581,0.33625064,0.736909356,pos,ns,0.853544172,Cacna1g,Cacna1g_Exon,11,94423686,94423735,94423734,94423735,50,-,CTGAGCTGCCGGAAGCAATTACATCGTCCAGCATTAGATCTAAAAGAACG,"Exon (Cacna1g-202/Cacna1g, exon 26 of 36)",11,94408391,94474100,65710,2,Cacna1g-202,50365,Cacna1g-202;Cacna1g-203;Cacna1g-205;Cacna1g-206;Cacna1g-207;Cacna1g-208;Cacna1g-209;Cacna1g-210;Cacna1g-211;Cacna1g-201;Cacna1g-204;Cacna1g-214;Cacna1g-212;Cacna1g-216,Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g,0;0;0;0;0;0;0;0;0;0;0;0;2727;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,18,12291,ENSMUSG00000020866,conserved gene but different region,11,94423663,94423795,133,*,133,10,0.571428571,0.921690922,0.07518797,0.000000942,CpGisland,TRUE,U11,Tr-P
11617,cg27392587,0.000110306,0.0000109,10.100596,6.36E-21,gain,yes,-0.0000219,0.0000186,-1.180390752,0.238749763,neg,ns,0.02142093,0.005435381,3.94101747,0.000100317,pos,ns,3.998627379,-0.000432935,0.000186922,-2.316120435,0.021203734,neg,ns,0.245123346,Emx2,Emx2_Intergenic_downstream,19,59467094,59467143,59467142,59467143,50,-,CTAATGAGGTTAATGCCCTTTGTATCTCAGGCCTCCACATCTTCATTACG,Downstream (1-2kb),19,59462802,59464215,1414,1,Emx2-203,4341,Emx2-201;Emx2-202;Emx2-203,Emx2;Emx2;Emx2,0;7575;4292,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,15,23,13797,ENSMUSG00000043969,mapped to different genes,19,59467121,59467392,272,*,272,18,0.525735294,0.993103448,0.066176471,7.09E-11,CpGisland,TRUE,U13,Hc-P
9086,cg05075308,-0.0000447,0.00000556,-8.039390544,1.92E-14,loss,yes,0.0000111,0.00000945,1.180263634,0.238800227,pos,ns,-0.004314274,0.002767109,-1.559127023,0.119986594,neg,ns,0.920867276,0.00011836,0.0000952,1.243790232,0.214516481,pos,ns,0.940178498,Irf2,Irf2_Exon,8,46818855,46818904,46818855,46818856,50,-,CGGTCCTGACTTCAACTATAAAAAATGAAGTGGATAGTACGGTGAACATC,"Exon (Irf2-201/Irf2, exon 6 of 9)",8,46739732,46847458,107727,1,Irf2-201,79123,Irf2-201;Irf2-210;Irf2-202;Irf2-209;Irf2-211;Irf2-207,Irf2;Irf2;Irf2;Irf2;Irf2;Irf2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,4,16363,ENSMUSG00000031627,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1657,cg04345269,-0.0000115,0.00000697,-1.649313242,0.100096393,loss,ns,-0.000014,0.0000118,-1.180219532,0.238817736,neg,ns,0.00108264,0.003468503,0.312134632,0.755148049,pos,ns,0.121967896,-0.000182247,0.000119282,-1.527868441,0.12756487,neg,ns,0.91736088,Zfp521,Zfp521_Intergenic_upstream,18,14091264,14091313,14091264,14091265,50,+,CGAAGGCCAAGCAAGCCATAAAATGTAATAAGAATTTCTTCAATCAATGT,Distal Intergenic,18,13687013,13972787,285775,2,Zfp521-201,-118477,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,81,225207,ENSMUSG00000024420,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18470,cg17996417,-0.0000291,0.0000128,-2.271265552,0.023816286,loss,ns,-0.0000257,0.0000218,-1.180085603,0.238870914,neg,ns,-0.002275268,0.00637769,-0.356754187,0.721518544,neg,ns,0.141752502,-0.000131379,0.000219328,-0.599007589,0.549605301,neg,ns,0.696353746,Prpf3,Prpf3_Exon,3,95835393,95835442,95835441,95835442,50,-,TTAAGCTTTTTAATTTTCTTGACCTTTCTCTGTTCTGCTGTGAGTTTTCG,"Exon (Prpf3-201/Prpf3, exon 12 of 16)",3,95830124,95855885,25762,2,Prpf3-201,20443,Prpf3-201;Prpf3-202;Prpf3-204;Prpf3-209;Prpf3-207;Prpf3-208,Prpf3;Prpf3;Prpf3;Prpf3;Prpf3;Prpf3,0;0;0;0;0;9725,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,6,70767,ENSMUSG00000015748,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9330,cg00842154,-0.00000376,0.00000369,-1.018433487,0.309266149,loss,ns,0.0000074,0.00000627,1.179944572,0.238926921,pos,ns,0.004811826,0.00183633,2.620348866,0.009216592,pos,ns,2.035429639,-0.000218658,0.0000632,-3.462447206,0.000610516,neg,ns,0.938393168,Slit2,Slit2_Exon,5,48220008,48220057,48220008,48220009,50,+,CGTTGCACCAGCCCCCGCCGCCTGGCAAACAAAAGAATTGGACAGATCAA,"Exon (Slit2-208/Slit2, exon 14 of 36)",5,47983138,48307733,324596,1,Slit2-208,236870,Slit2-208;Slit2-201;Slit2-202;Slit2-216;Slit2-217;Slit2-209;Slit2-218;Slit2-206,Slit2;Slit2;Slit2;Slit2;Slit2;Slit2;Slit2;Slit2,0;0;0;0;0;37906;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,11,20563,ENSMUSG00000031558,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7753,cg19838787,-0.00000233,0.00000173,-1.347997255,0.178643446,loss,ns,-0.00000347,0.00000294,-1.179909612,0.238940807,neg,ns,0.000459646,0.000860619,0.534088168,0.593663319,pos,ns,0.226459784,-0.0000521,0.0000296,-1.761795823,0.079089433,neg,ns,0.953746269,Rnf38,Rnf38_threeUTR,4,44129266,44129315,44129314,44129315,50,+,AAAGCACATGCTAAAAGATCACGTCCACTGTAATCTTGCAGCAACACTCG,3' UTR,4,44126210,44167608,41399,2,Rnf38-202,38293,Rnf38-202;Rnf38-203;Rnf38-201;Rnf38-204;Rnf38-208;Rnf38-214;Rnf38-211,Rnf38;Rnf38;Rnf38;Rnf38;Rnf38;Rnf38;Rnf38,0;0;0;0;0;9637;10271,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,6,73469,ENSMUSG00000035696,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6517,cg25676350,-0.00000282,0.00000208,-1.356432363,0.175948684,loss,ns,-0.00000417,0.00000353,-1.1796524,0.239042981,neg,ns,0.000698541,0.001035533,0.674571834,0.500450583,pos,ns,0.3006388,-0.0000639,0.0000356,-1.794588427,0.073693464,neg,ns,0.95877544,Siae,Siae_Intron,9,37575779,37575828,37575779,37575780,50,-,CGGAATATCAGTGAACAGAATGCTAAGGAACTAGAAAACTTATTCCAATA,"Intron (Siae-202/Siae, intron 2 of 10)",9,37555698,37646987,91290,1,Siae-202,20081,Siae-202,Siae,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,5,22619,ENSMUSG00000001942,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6832,cg14219918,0.0000389,0.00000861,4.515914059,0.00000897,gain,ns,-0.0000172,0.0000146,-1.179557131,0.239080833,neg,ns,-0.008139499,0.004283007,-1.900416821,0.058305981,neg,ns,1.23428689,0.000385103,0.000147292,2.61455192,0.009370961,pos,ns,0.841020898,Nr5a1,Nr5a1_Intron,2,38697486,38697535,38697534,38697535,50,-,CCAGCGAGGCATAAAGAATGTTGTCCCAATAGCGGTAACTCAGGCAGGCG,"Intron (Nr5a1-202/Nr5a1, intron 6 of 6)",2,38692656,38712234,19579,2,Nr5a1-202,14699,Nr5a1-202;Nr5a1-201;Nr5a1-203,Nr5a1;Nr5a1;Nr5a1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,7,26423,ENSMUSG00000026751,conserved gene and region,2,38697534,38697743,210,*,210,16,0.542857143,1.034164358,0.076190476,1.20E-10,CpGisland,TRUE,U11,Tr-P
3475,cg27371357,-0.0000034,0.00000205,-1.659122356,0.098102454,loss,ns,0.0000041,0.00000348,1.179395375,0.239145112,pos,ns,0.00090959,0.001019295,0.892371841,0.37288582,pos,ns,0.428424131,0.00000747,0.0000351,0.213236548,0.831282626,pos,ns,0.957927724,Bcl11a,Bcl11a_Exon,11,24163591,24163640,24163591,24163592,50,+,CGCCATGGATTTCTCTAGGAGACTTAGAGAGCTGGCAGGGAACACGTCTA,"Exon (Bcl11a-201/Bcl11a, exon 4 of 5)",11,24078056,24173194,95139,1,Bcl11a-201,85535,Bcl11a-201;Bcl11a-203;Bcl11a-202;Bcl11a-204;Bcl11a-206,Bcl11a;Bcl11a;Bcl11a;Bcl11a;Bcl11a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,51,98,14025,ENSMUSG00000000861,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20703,cg13968621,-0.000019,0.00000707,-2.681382972,0.007724443,loss,ns,-0.0000142,0.000012,-1.178814971,0.239375853,neg,ns,-0.008036093,0.003519688,-2.28318306,0.02309613,neg,ns,1.636460786,0.000148012,0.000121042,1.222815485,0.222328203,pos,ns,0.777537026,Cntn6,Cntn6_fiveUTR,6,104493096,104493145,104493096,104493097,50,-,CGCAATACTCAGTGGATAAAAGGCTTGCAGTCCCAGCTGGGAAAAAGAGT,Promoter (<=1kb),6,104492790,104642949,150160,1,Cntn6-204,306,Cntn6-204;Cntn6-202;Cntn6-201;Cntn6-203;Cntn6-205,Cntn6;Cntn6;Cntn6;Cntn6;Cntn6,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,4,53870,ENSMUSG00000030092,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22254,cg11342997,0.000034,0.0000127,2.66701352,0.008054697,gain,ns,0.0000255,0.0000217,1.178772242,0.239392846,pos,ns,0.010826984,0.00634488,1.70641259,0.088932763,pos,ns,1.050938214,-0.000184309,0.0002182,-0.844678576,0.398941728,neg,ns,0.651054629,Oxtr,Oxtr_Exon,6,112488906,112488955,112488906,112488907,50,-,CGCTCCACATCTGCACGAAGAAGAAAGGCGTCCAGCACACGATGAAGGCC,Promoter (<=1kb),6,112473683,112489943,16261,2,Oxtr-201,988,Oxtr-201;Oxtr-202,Oxtr;Oxtr,0;-512,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,18430,ENSMUSG00000049112,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
11692,cg02177464,0.00000299,0.00000371,0.806670095,0.420475004,gain,ns,0.00000742,0.00000629,1.178610647,0.23945712,pos,ns,0.005921353,0.001844077,3.211011371,0.001461497,pos,ns,2.835201946,-0.000168591,0.0000634,-2.658423961,0.008258125,neg,ns,0.918289388,Baz2b,Baz2b_Exon,2,59983870,59983919,59983918,59983919,50,-,GGCTGAATGTAGACCAAAGACTGGGTGGCTGACCATTGGGAAGGCACTCG,"Exon (Baz2b-207/Baz2b, exon 5 of 6)",2,59899363,60125697,226335,2,Baz2b-202,141778,Baz2b-202;Baz2b-201;Baz2b-207;Baz2b-203,Baz2b;Baz2b;Baz2b;Baz2b,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,9,407823,ENSMUSG00000026987,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3696,cg17349123,0.0000498,0.00000774,6.430221642,4.81E-10,gain,yes,-0.0000155,0.0000132,-1.178607106,0.239458529,neg,ns,0.013041072,0.003852854,3.384781954,0.000803971,pos,ns,3.094759792,-0.000377754,0.000132499,-2.850988597,0.004650687,neg,ns,0.498822886,Grik5,Grik5_Exon,7,25068017,25068066,25068017,25068018,50,+,CGTGGTCTCGTACTGGCTGTCCCGCTGCAGCTCAAAGATGTCTACTTCCA,"Exon (Grik5-202/Grik5, exon 3 of 20)",7,25009849,25072101,62253,2,Grik5-202,4035,Grik5-202;Grik5-201;Grik5-207;Grik5-203;Grik5-204;Zfp574-204;Zfp574-203,Grik5;Grik5;Grik5;Grik5;Grik5;Zfp574;Zfp574,0;0;0;-2824;4244;-4501;-4580,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,14809,ENSMUSG00000003378,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26649,cg26934229,0.0000111,0.00000463,2.4005053,0.016961669,gain,ns,-0.00000926,0.00000786,-1.178592646,0.239464281,neg,ns,-0.002143785,0.00230229,-0.931152945,0.352499032,neg,ns,0.452842072,0.0000124,0.0000792,0.156335543,0.875870301,pos,ns,0.875375806,Medag,Medag_Intergenic_upstream,5,149349810,149349859,149349858,149349859,50,-,CTAGTCAGAGGCGTATAATTTAACACTTAATTGTTTTCTAATTGCTTCCG,Distal Intergenic,5,149411749,149431723,19975,1,Medag-201,-61939,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,70717,ENSMUSG00000029659,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6833,cg01653419,0.00000161,0.00000181,0.886048695,0.376278096,gain,ns,0.00000363,0.00000308,1.178589789,0.239465418,pos,ns,0.002375827,0.000902433,2.632689935,0.008895528,pos,ns,2.050828248,-0.0000598,0.000031,-1.928222592,0.054740532,neg,ns,0.957275587,Hipk2,Hipk2_Exon,6,38698293,38698342,38698341,38698342,50,-,TCACGGGGACCTGGTGGACGATGCTGGCTGGGTAGGCAGTGTGCTGCACG,"Exon (Hipk2-206/Hipk2, exon 15 of 15)",6,38694390,38876165,181776,2,Hipk2-206,177823,Hipk2-206;Hipk2-205;Hipk2-207;Hipk2-204,Hipk2;Hipk2;Hipk2;Hipk2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,15258,ENSMUSG00000061436,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24401,cg02147696,-0.0000135,0.00000756,-1.791801748,0.074139927,loss,ns,-0.0000151,0.0000128,-1.178536948,0.239486438,neg,ns,-0.010731977,0.003761802,-2.852881964,0.004623784,neg,ns,2.335002482,0.000352173,0.000129368,2.722255091,0.006850698,pos,ns,0.822971739,Zc3h12a,Zc3h12a_Intergenic_upstream,4,125208136,125208185,125208184,125208185,50,-,ACATTGGATTGAAGAATTGATCCCTACAGCTAAGTAATTTCCCTCTTTCG,Distal Intergenic,4,125118423,125127840,9418,2,Zc3h12a-201,-80345,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,5,230738,ENSMUSG00000042677,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5216,cg06929627,-0.00000452,0.00000296,-1.526967723,0.127788661,loss,ns,0.00000593,0.00000503,1.178462605,0.239516015,pos,ns,0.000810622,0.001473547,0.550116596,0.582635546,pos,ns,0.234603023,-0.0000497,0.0000507,-0.980059326,0.327821061,neg,ns,0.926737437,Depdc5,Depdc5_threeUTR,5,32893391,32893440,32893391,32893392,50,+,CGTCGGCTATGGTTTACATATTTATTCAGATGAGCTGTGAAATGTGGGAT,3' UTR,5,32863706,32895934,32229,1,Depdc5-203,29685,Depdc5-203;Depdc5-201;Depdc5-202;Depdc5-204;Depdc5-211;Depdc5-216;Depdc5-217;Depdc5-205,Depdc5;Depdc5;Depdc5;Depdc5;Depdc5;Depdc5;Depdc5;Depdc5,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,7,277854,ENSMUSG00000037426,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18266,cg21202410,-0.000000783,0.00000196,-0.399457621,0.689831109,loss,ns,0.00000392,0.00000333,1.178342694,0.239563725,pos,ns,0.000566941,0.000975645,0.581093791,0.561599478,pos,ns,0.250573304,-0.000034,0.0000336,-1.012066502,0.312295527,neg,ns,0.954815287,Dyrk1a,Dyrk1a_fiveUTR,16,94659532,94659581,94659532,94659533,50,-,CGGCTTGCACCGTCATTTTCATTCCATGCTGCTGGCCTTCAGATGGCTGG,5' UTR,16,94570010,94695067,125058,1,Dyrk1a-202,89522,Dyrk1a-202;Dyrk1a-203;Dyrk1a-205;Dyrk1a-206;Dyrk1a-201,Dyrk1a;Dyrk1a;Dyrk1a;Dyrk1a;Dyrk1a,0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,14,13548,ENSMUSG00000022897,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9597,cg23942154,0.00000264,0.00000218,1.207150753,0.228294363,gain,ns,-0.00000437,0.00000371,-1.178334004,0.239567183,neg,ns,0.000311632,0.001086547,0.286809268,0.774449965,pos,ns,0.111006635,-0.0000171,0.0000374,-0.458604102,0.646839839,neg,ns,0.935187727,Mocs1,Mocs1_threeUTR,17,49452793,49452842,49452841,49452842,50,-,AGGCATGTTCAGTATTTCCCAGATGAAGAACCGGCCCATGATCCTCATCG,3' UTR,17,49428364,49455432,27069,1,Mocs1-201,24429,Daam2-203;Mocs1-201;Mocs1-203;Mocs1-204;Mocs1-207;Mocs1-205,Daam2;Mocs1;Mocs1;Mocs1;Mocs1;Mocs1,111495;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,2,56738,ENSMUSG00000064120,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2882,cg23347753,0.0000325,0.00000496,6.555879437,2.31E-10,gain,yes,0.00000993,0.00000843,1.178230432,0.239608398,pos,ns,0.00128451,0.00246891,0.520274008,0.603243964,pos,ns,0.219507015,0.000085,0.0000849,1.001318883,0.317453615,pos,ns,0.14061745,Otx1,Otx1_Promoter,11,22003321,22003370,22003369,22003370,50,+,GAGGTTTTACAAGATCCTTCTCTGGTTCACAAAAGTCAGCGACACGGGCG,Promoter (<=1kb),11,21996858,22002897,6040,2,Otx1-202,-424,Ehbp1-201;Ehbp1-202;Ehbp1-207;Otx1-201;Otx1-203;Otx1-202,Ehbp1;Ehbp1;Ehbp1;Otx1;Otx1;Otx1,0;0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,8,13,18423,ENSMUSG00000005917,mapped to different genes,11,22003360,22003444,85,*,85,8,0.517647059,1.407867495,0.094117647,0.00000348,CpGisland,TRUE,U3,Pr-B
8323,cg06063479,0.000143212,0.0000114,12.51066689,2.38E-29,gain,yes,-0.0000229,0.0000194,-1.177896901,0.239741157,neg,ns,-0.005998963,0.005697383,-1.052932957,0.293191734,neg,ns,0.532848278,0.000111391,0.000195933,0.56851826,0.570094711,pos,ns,0.523985091,Zeb2,Zeb2_Intron,2,45019995,45020044,45020043,45020044,50,-,AGAATGTCAAGGACAATTCCAAACACAAAACTTTGATTGTGCTGGAACCG,"Intron (Zeb2-212/Zeb2, intron 4 of 10)",2,44983632,45117395,133764,2,Zeb2-212,97351,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-227;Zeb2-216;Zeb2-229;Zeb2-218;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9284,cg24769153,0.0000687,0.0000121,5.688289174,2.97E-08,gain,yes,0.0000242,0.0000205,1.177794082,0.239782094,pos,ns,0.008985868,0.006013246,1.494345559,0.136102499,pos,ns,0.866133901,0.0000569,0.000206795,0.275137256,0.783394078,pos,ns,0.568909175,Gm47213,Gm47213_Intergenic_downstream,9,47882524,47882573,47882524,47882525,50,-,CGGTATGAACCAGCCAAGCGCTGTGAAGAGCTAATCTGTGCAGAGCTAAT,Distal Intergenic,9,47947880,47948161,282,2,Gm47213-201,65637,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,7,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10490,cg22188084,0.0000965,0.0000137,7.02078034,1.40E-11,gain,yes,-0.0000275,0.0000234,-1.177649546,0.239839649,neg,ns,0.015755511,0.006842945,2.30244587,0.021972264,pos,ns,1.658125184,-0.000440674,0.000235328,-1.872592989,0.062065744,neg,ns,0.279471155,Npas3,Npas3_Intron,12,53838804,53838853,53838852,53838853,50,+,TGAAAGGTTATGCTAGTAAATGCCATCCGAATTTCCAGCATTAGAAATCG,"Intron (Npas3-204/Npas3, intron 4 of 10)",12,53248157,54069532,821376,1,Npas3-204,590647,Npas3-204;Npas3-201;Npas3-203,Npas3;Npas3;Npas3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,83,103,27386,ENSMUSG00000021010,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22111,cg08575708,-0.00000229,0.00000244,-0.935490492,0.350263735,loss,ns,-0.00000489,0.00000415,-1.177631662,0.239846771,neg,ns,-0.002575164,0.001215867,-2.117966111,0.034973549,neg,ns,1.456260299,0.0000476,0.0000418,1.139537963,0.255358576,pos,ns,0.938933818,Eif4g2,Eif4g2_Exon,7,111076331,111076380,111076331,111076332,50,+,CGACTGTCCTTGCAGCTGGGATAAGAGTCCCTGACTCTGGTTATGGTAGA,"Exon (Eif4g2-213/Eif4g2, exon 14 of 22)",7,111067750,111083030,15281,2,Eif4g2-213,6650,Eif4g2-213;Eif4g2-206;Eif4g2-207;Eif4g2-208;Eif4g2-214;Eif4g2-202;Eif4g2-204;Eif4g2-211;Eif4g2-210;Eif4g2-209;Eif4g2-203;Eif4g2-201;Eif4g2-212;Eif4g2-205,Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2,0;0;0;0;-2082;-1632;-946;-122;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,20,22,13690,ENSMUSG00000005610,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22177,cg12149115,-0.0000709,0.00000949,-7.468256147,8.31E-13,loss,yes,0.000019,0.0000161,1.177561528,0.239874702,pos,ns,-0.007257175,0.004722206,-1.536818788,0.125357699,neg,ns,0.901848988,0.000199031,0.000162396,1.22558879,0.221283743,pos,ns,0.806290038,Gm26897,Gm26897_Intergenic_upstream,5,111661980,111662029,111661980,111661981,50,-,CGGGAAATTAAATAATGTTCGTTTCTGCTGCTGTGAGCCGGAACAAGGCT,Distal Intergenic,5,111733924,111734574,651,1,Gm26897-201,-71944,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,23,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15073,cg19549788,0.000014,0.00000225,6.208029428,1.72E-09,gain,yes,-0.0000045,0.00000382,-1.177363513,0.239953576,neg,ns,0.001532392,0.001118782,1.369697129,0.171772775,pos,ns,0.765045669,-0.00000323,0.0000385,-0.083849546,0.933230175,neg,ns,0.025951037,Zfp827,Zfp827_Promoter,8,79028240,79028289,79028240,79028241,50,-,CGCCGCCGCTGCCCTTTGATCCCGACATTAGTGTTAGGGGCTCGGAGACA,Promoter (<=1kb),8,79028437,79193743,165307,1,Zfp827-202,-197,Zfp827-201;Zfp827-202;Zfp827-203;Zfp827-209,Zfp827;Zfp827;Zfp827;Zfp827,0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,10,28,622675,ENSMUSG00000071064,conserved gene and region,8,79028199,79028434,236,*,236,23,0.588983051,1.130833333,0.097457627,1.44E-17,CpGisland,TRUE,U1,Pr-A
10127,cg19184598,0.000124779,0.0000161,7.735309213,1.46E-13,gain,yes,-0.0000323,0.0000274,-1.177346659,0.23996029,neg,ns,0.025095097,0.008028635,3.125698958,0.001941819,pos,ns,2.71179123,-0.000710766,0.000276104,-2.574267715,0.010509257,neg,ns,0.175988841,Gm28308,Gm28308_Intron,6,52197551,52197600,52197599,52197600,50,-,GTTAGGCGATGACAGACTTCACCTCCAGCAAGGGCTGCTTCACAAAATCG,"Intron (Hoxaas3-202/Hoxaas3-202, intron 1 of 2)",6,52163359,52213339,49981,2,Gm28308-201,15739,Gm28308-201;Hoxa3-201;Hoxa3-203;Hoxa5-201,Gm28308;Hoxa3;Hoxa3;Hoxa5,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,46,103,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
27425,cg17360722,-0.0000297,0.0000283,-1.051417336,0.293885858,loss,ns,0.0000565,0.000048,1.177273398,0.239989477,pos,ns,-0.007410724,0.014071378,-0.52665232,0.598811674,neg,ns,0.222709742,0.000667716,0.000483914,1.37982467,0.16863501,pos,ns,0.575742686,Lmx1a,Lmx1a_Intron,1,167761970,167762019,167762018,167762019,50,+,TGGGGGTTTGTTAAGCATTATCTAAAGAATGCCATGGTTCAGCCTGCTCG,"Intron (Lmx1a-202/Lmx1a, intron 3 of 8)",1,167689237,167848741,159505,1,Lmx1a-202,72733,Lmx1a-202;Lmx1a-201,Lmx1a;Lmx1a,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,6,110648,ENSMUSG00000026686,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15421,cg10150129,0.0000435,0.0000103,4.228977799,0.0000309,gain,ns,-0.0000206,0.0000175,-1.177243018,0.240001581,neg,ns,0.010304793,0.005122633,2.011620331,0.045125041,pos,ns,1.345582393,-0.000643534,0.000176167,-3.652978051,0.00030425,neg,ns,0.60143559,Tnrc6b,Tnrc6b_Exon,15,80876384,80876433,80876432,80876433,50,-,GCCACCAGTCAATGGTGGCAACAATGCCAAAAGGGTGGCAGTGCCGAACG,"Exon (Tnrc6b-201/Tnrc6b, exon 7 of 25)",15,80711313,80941085,229773,1,Tnrc6b-201,165071,Tnrc6b-201;Tnrc6b-204;Tnrc6b-207;Tnrc6b-208,Tnrc6b;Tnrc6b;Tnrc6b;Tnrc6b,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,20,24,213988,ENSMUSG00000047888,conserved gene and region,15,80876428,80876567,140,*,140,14,0.657142857,0.933333333,0.1,5.38E-11,CpGisland,TRUE,U10,Tr-S
23310,cg13209512,0.00000319,0.00000254,1.255606069,0.210204397,gain,ns,0.00000508,0.00000431,1.177231182,0.240006297,pos,ns,0.000400053,0.001263503,0.316622019,0.75174353,pos,ns,0.123930301,-0.0000119,0.0000435,-0.272960567,0.785065273,neg,ns,0.958973898,Eri3,Eri3_Intron,4,117671950,117671999,117671998,117671999,50,+,CGCTGGGTAATTGCAGATAACGAGGGGACTTATTCTTAATATGCACAGCG,"Intron (Eri3-201/Eri3, intron 8 of 8)",4,117550365,117674297,123933,1,Eri3-201,121585,Dmap1-206;Dmap1-201;Dmap1-204;Eri3-201;Eri3-206;Eri3-203,Dmap1;Dmap1;Dmap1;Eri3;Eri3;Eri3,10254;10274;9984;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,82,97,140546,ENSMUSG00000033423,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4636,cg22513688,-0.0000023,0.00000086,-2.671526822,0.007949625,loss,ns,0.00000172,0.00000146,1.177187174,0.240023831,pos,ns,0.000196667,0.000427977,0.459526647,0.646178105,pos,ns,0.189647762,-0.00000176,0.0000147,-0.119799299,0.904719738,neg,ns,0.028673402,Hes1,Hes1_Intron,16,30009061,30009110,30009061,30009062,50,-,CGTTTTCCCACAGTCTGGGGCGGTGACACATGGCGCTCACACATTCCACA,"Intron (4632428C04Rik-201/4632428C04Rik-201, intron 1 of 2)",16,30064384,30065580,1197,1,Hes1-202,-55323,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,20,15205,ENSMUSG00000022528,mapped to different genes,16,30008827,30009291,465,*,465,53,0.746236559,0.835367094,0.113978495,9.13E-44,CpGisland,TRUE,U1,Pr-A
5,cg20907124,0.00000394,0.00000417,0.94442084,0.345690118,gain,ns,-0.00000834,0.00000708,-1.177150724,0.240038355,neg,ns,-0.001701991,0.002075157,-0.820174474,0.412746833,neg,ns,0.38431625,-0.0000427,0.0000714,-0.598034753,0.550253391,neg,ns,0.933332819,Scaf8,Scaf8_Exon,17,3198010,3198059,3198010,3198011,50,-,CGAAAAGGTGATAATGTGCCTCAGGTTAATGGTGAAAATACAGAGAGACA,"Exon (Scaf8-201/Scaf8, exon 20 of 20)",17,3114979,3198859,83881,1,Scaf8-201,83031,Scaf8-201,Scaf8,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,4,106583,ENSMUSG00000046201,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6790,cg20668249,-0.0000124,0.00000602,-2.062915677,0.039953185,loss,ns,0.000012,0.0000102,1.177083089,0.240065307,pos,ns,0.008770084,0.00299608,2.927185835,0.003673494,pos,ns,2.434920711,-0.000249456,0.000103035,-2.421081218,0.016048413,neg,ns,0.864635456,Wdr1,Wdr1_threeUTR,5,38526859,38526908,38526859,38526860,50,+,CGCTCAAAGTGTTTTCACAAGTGCAAGGGGAGGGATTGTTCTCAGCCAAC,3' UTR,5,38526813,38561806,34994,2,Wdr1-201,34898,Wdr1-201;Wdr1-202;Wdr1-205;Wdr1-203;Wdr1-208;Wdr1-210,Wdr1;Wdr1;Wdr1;Wdr1;Wdr1;Wdr1,0;3218;34727;3106;2942;5088,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,22388,ENSMUSG00000005103,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10014,cg26263764,-0.00000582,0.0000015,-3.884552953,0.000125357,loss,ns,0.000003,0.00000255,1.177035936,0.240084098,pos,ns,0.001981556,0.000746299,2.655177462,0.008336208,pos,ns,2.079031473,-0.0000593,0.0000257,-2.312061832,0.02142934,neg,ns,0.040602585,Jade2,Jade2_fiveUTR,11,51857607,51857656,51857607,51857608,50,+,CGATGGCCGCGGTCGGCACCATTCACCAACCCCCTGTGTATGTTTCTGTT,Promoter (<=1kb),11,51813455,51857653,44199,2,Jade2-201,0,Jade2-201;Jade2-202;Jade2-203;Jade2-204,Jade2;Jade2;Jade2;Jade2,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,6,76901,ENSMUSG00000020387,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
831,cg26418874,-0.00000218,0.00000114,-1.912694062,0.056708492,loss,ns,-0.00000228,0.00000193,-1.177009765,0.240094528,neg,ns,-0.001078183,0.000566461,-1.903367662,0.057918634,neg,ns,1.237181688,0.00000594,0.0000195,0.30508439,0.760506613,pos,ns,0.959310859,1810013L24Rik,1810013L24Rik_Exon,16,8855922,8855971,8855970,8855971,50,+,ATATCAGAAGAAATGGCACTCCACTTGGACAATGGTGGAACTAGAAAGCG,"Exon (1810013L24Rik-201/1810013L24Rik, exon 4 of 4)",16,8830100,8858922,28823,1,1810013L24Rik-201,25822,1810013L24Rik-201,1810013L24Rik,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,18,19,69053,ENSMUSG00000022507,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18952,cg20584529,0.00000381,0.00000419,0.908817076,0.36415269,gain,ns,0.00000838,0.00000712,1.176937628,0.240123278,pos,ns,0.00343114,0.002084873,1.645730521,0.100832713,pos,ns,0.996398548,-0.000100679,0.0000717,-1.404204048,0.161259161,neg,ns,0.901897283,Dach1,Dach1_Intron,14,98019100,98019149,98019100,98019101,50,+,CGGTTGCTTTTGCAGTTAGATGTAATAGACTTCCATCACTAATTAGATTA,"Intron (Dach1-201/Dach1, intron 1 of 10)",14,97786853,98169543,382691,2,Dach1-201,150394,Dach1-201;Dach1-202;Dach1-203,Dach1;Dach1;Dach1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,76,13134,ENSMUSG00000055639,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15221,cg18277058,-0.00000232,0.00000174,-1.333984689,0.18318805,loss,ns,0.00000348,0.00000295,1.176864022,0.240152617,pos,ns,0.002011876,0.000865675,2.324054043,0.020768725,pos,ns,1.682590164,-0.0000307,0.0000298,-1.031045948,0.303323004,neg,ns,0.961272374,Rab11fip4,Rab11fip4_Exon,11,79726459,79726508,79726507,79726508,50,-,CTCAGTCATAATGCCCCTAAAAATCCTTATTGTTCTTGCAGTGTGCATCG,"Exon (Mir365-2-201/Mir365-2-201, exon 1 of 1)",11,79660562,79683498,22937,1,Rab11fip4-202,65946,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,268451,ENSMUSG00000017639,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2219,cg25609272,-0.0000106,0.00000509,-2.090298427,0.03740541,loss,ns,-0.0000102,0.00000865,-1.176707225,0.240215122,neg,ns,-0.005426682,0.00253426,-2.141327933,0.033027011,neg,ns,1.481130735,0.000132551,0.0000872,1.520902836,0.129303526,pos,ns,0.892027993,Gm37317,Gm37317_Intergenic_upstream,3,18670470,18670519,18670518,18670519,50,+,ATGTTTAATTGTGCCTTAATTTTGATAAAATTTATCTGTCACACATCCCG,Distal Intergenic,3,18609808,18610831,1024,2,Gm37317-201,-59639,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,10,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2151,cg02917874,0.000016,0.00000829,1.927703285,0.054805407,gain,ns,-0.0000166,0.0000141,-1.176703907,0.240216445,neg,ns,-0.003448909,0.004126166,-0.835862878,0.403875835,neg,ns,0.393752131,0.000116533,0.000141899,0.82124077,0.412140246,pos,ns,0.873112998,Cyp7b1,Cyp7b1_Intron,3,18096764,18096813,18096764,18096765,50,-,CGTTTATTACACTGATTAGATTTGCAGTGTGCTAATTAAAAGATGTTAGG,"Intron (Cyp7b1-201/Cyp7b1, intron 3 of 5)",3,18071950,18243338,171389,2,Cyp7b1-201,146525,Cyp7b1-201,Cyp7b1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,17,13123,ENSMUSG00000039519,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21190,cg05204798,0.000188669,0.0000164,11.53860037,7.26E-26,gain,yes,-0.0000327,0.0000278,-1.176688069,0.240222759,neg,ns,0.021980261,0.0081381,2.700908298,0.007295237,pos,ns,2.136960591,-0.000631408,0.000279869,-2.256088968,0.02476166,neg,ns,0.131364807,Mpped2,Mpped2_fiveUTR,2,106693454,106693503,106693502,106693503,50,+,GAGCTGTGCTCCTTTGACCCCAGTGGCAGTCCCTGTCACTGCACCGCTCG,Promoter (<=1kb),2,106693269,106868356,175088,1,Mpped2-202,185,Mpped2-202;Mpped2-206;Mpped2-201;Mpped2-203;Mpped2-204,Mpped2;Mpped2;Mpped2;Mpped2;Mpped2,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,33,77015,ENSMUSG00000016386,conserved gene but different region,2,106693498,106694592,1095,*,1095,121,0.722374429,0.847642505,0.110502283,2.54E-97,CpGisland,TRUE,U3,Pr-B
12864,cg27417842,-0.00000031,0.00000252,-0.123001763,0.902185408,loss,ns,0.00000504,0.00000428,1.176589643,0.240262002,pos,ns,0.003575691,0.001254839,2.849521034,0.004671637,pos,ns,2.330530894,-0.000117094,0.0000432,-2.713416114,0.007031712,neg,ns,0.946602619,Gm20072,Gm20072_Intergenic_downstream,5,67477647,67477696,67477647,67477648,50,+,CGATAAAATGTTTCTGCTTCTGTGGTAGAAAATAGCTTATTATGCAAACA,Distal Intergenic,5,67453479,67453770,292,1,Gm20072-201,24168,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,102636357,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13035,cg06138703,-0.00000832,0.00000408,-2.041590618,0.042038465,loss,ns,-0.00000815,0.00000693,-1.176234409,0.240403675,neg,ns,-0.002463168,0.002028814,-1.21409269,0.225636427,neg,ns,0.646590787,0.0000204,0.0000698,0.292421436,0.770160037,pos,ns,0.910849218,Cntrob,Cntrob_Exon,11,69321353,69321402,69321401,69321402,50,-,CACTTGAGCAAGGTGGCTGTGCTATCACTGTCAAAGGAGTCCTCTTCCCG,"Exon (Cntrob-201/Cntrob, exon 3 of 19)",11,69299487,69323775,24289,2,Cntrob-201,2373,Cntrob-201;Cntrob-202;Cntrob-210;Cntrob-203;Cntrob-209;Kcnab3-201;Trappc1-203;Trappc1-202;Trappc1-201;Trappc1-204;Trappc1-205,Cntrob;Cntrob;Cntrob;Cntrob;Cntrob;Kcnab3;Trappc1;Trappc1;Trappc1;Trappc1;Trappc1,0;0;-1886;-1281;-1868;-4856;-2578;-2661;-2673;-2755;-3036,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,216846,ENSMUSG00000032782,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3327,cg19016686,-0.00000962,0.00000691,-1.393590414,0.164439597,loss,ns,0.0000138,0.0000117,1.176146152,0.240438882,pos,ns,-0.001734462,0.003436931,-0.504654271,0.614160213,neg,ns,0.211718322,0.000161643,0.000118196,1.367585582,0.172432481,pos,ns,0.887938743,Gm11890,Gm11890_Intergenic_downstream,4,23602834,23602883,23602882,23602883,50,+,TTGGAGCAGCCATGTCACAGAGTGAGGGGACACATGTCTAGATGAAGGCG,Distal Intergenic,4,23659928,23660344,417,2,Gm11890-201,57461,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,32,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20340,cg23214301,0.00000802,0.00000376,2.13402578,0.033625173,gain,ns,-0.00000751,0.00000638,-1.176078994,0.240465675,neg,ns,-0.004719278,0.001870109,-2.523530566,0.012117898,neg,ns,1.916572702,0.000138195,0.0000643,2.148786174,0.032425532,pos,ns,0.075360017,Hoxc5,Hoxc5_Exon,15,103009662,103009711,103009662,103009663,50,-,CGTCCTCCCCAACGTCGCCCTCAATTCCACCGCCTATGATCCAGTGAGGC,"Exon (Hoxc6-202/Hoxc6, exon 2 of 3)",15,102967443,103015676,48234,1,Hoxc5-202,42219,Hoxc5-202;Hoxc5-201;Hoxc6-202;Hoxc6-203;Hoxc6-201,Hoxc5;Hoxc5;Hoxc6;Hoxc6;Hoxc6,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,72,134,15424,ENSMUSG00000022485,mapped to different genes,15,103009647,103009812,166,*,166,14,0.602409639,0.948184415,0.084337349,5.77E-10,CpGisland,TRUE,U13,Hc-P
12809,cg13761591,-0.00000314,0.00000497,-0.631975135,0.527868908,loss,ns,-0.00000993,0.00000845,-1.176074867,0.240467322,neg,ns,-0.008361689,0.002474118,-3.37966489,0.00081854,neg,ns,3.086960085,0.000244173,0.0000851,2.869763264,0.004390104,pos,ns,0.819929516,Tln2,Tln2_Exon,9,67224051,67224100,67224099,67224100,50,-,GGCTGCACGGACAAGATTGTCTGAGGCTCTTTTCACAGCATTTCCTGCCG,"Exon (Tln2-202/Tln2, exon 57 of 58)",9,67217087,67559703,342617,2,Tln2-202,335603,Tln2-202;Tln2-209;Tln2-204;Tln2-207;Tln2-205;Tln2-201;Tln2-208,Tln2;Tln2;Tln2;Tln2;Tln2;Tln2;Tln2,0;0;0;0;0;0;7307,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,70549,ENSMUSG00000052698,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24291,cg11170396,0.000057,0.0000124,4.602502191,0.0000061,gain,ns,-0.0000248,0.000021,-1.176006887,0.240494445,neg,ns,0.018370845,0.0061666,2.979088061,0.003119488,pos,ns,2.505916738,-0.000541764,0.000212069,-2.554658997,0.011106832,neg,ns,0.294905324,Pou3f1,Pou3f1_Intergenic_upstream,4,124506510,124506559,124506558,124506559,50,-,TGTGAATAATGGATTATGATGATACAATTTGGGTCTCTTAGCTCTCACCG,Distal Intergenic,4,124656807,124660655,3849,1,Pou3f1-201,-150297,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,24,85,18991,ENSMUSG00000090125,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9233,cg15739209,-0.00000841,0.00000356,-2.36532298,0.018629718,loss,ns,0.0000071,0.00000604,1.175955829,0.240514818,pos,ns,0.003069483,0.001769997,1.734174505,0.083881226,pos,ns,1.076335233,-0.000118306,0.0000609,-1.943583838,0.052850404,neg,ns,0.929819986,Cadm1,Cadm1_Intron,9,47803287,47803336,47803335,47803336,50,+,TCTGGGGCATTAGCCGCTCTTGTTTGTGACATTTCCCTGTTGGGTGCTCG,"Intron (Cadm1-204/Cadm1, intron 5 of 9)",9,47530173,47853385,323213,1,Cadm1-204,273114,Cadm1-204;Cadm1-209;Cadm1-206;Cadm1-202;Cadm1-203;Cadm1-205;Cadm1-211;Cadm1-208;Cadm1-201,Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,77,54725,ENSMUSG00000032076,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3707,cg16117415,0.0000327,0.00000415,7.885865398,5.38E-14,gain,yes,-0.00000829,0.00000705,-1.175901086,0.240536663,neg,ns,0.007075734,0.002065177,3.426211436,0.000694612,pos,ns,3.158257485,-0.000314116,0.000071,-4.422836749,0.0000135,neg,ns,0.090287338,Gm47909,Gm47909_Intergenic_upstream,14,25108995,25109044,25109043,25109044,50,-,CTCTCAAACAAAACAAAATCATTGGCCTGCCAGGGTCATTAAGGACCCCG,Distal Intergenic,14,25089939,25090406,468,2,Gm47909-201,-18638,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,17,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
5291,cg12918088,-0.0000132,0.00000601,-2.187698556,0.029438063,loss,ns,-0.000012,0.0000102,-1.175782647,0.24058393,neg,ns,-0.000466323,0.002992238,-0.155844365,0.876257132,neg,ns,0.057368434,-0.000102163,0.000102903,-0.992811292,0.321576223,neg,ns,0.925441193,Ranbp17,Ranbp17_Intron,11,33343271,33343320,33343319,33343320,50,+,CTTATTACTTCACTGAAATTAAAACCTAAGTTTTAATACTGTTCAAGTCG,"Intron (Ranbp17-202/Ranbp17, intron 14 of 27)",11,33211795,33513746,301952,2,Ranbp17-202,170426,Ranbp17-202;Ranbp17-206;Ranbp17-203,Ranbp17;Ranbp17;Ranbp17,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,31,66011,ENSMUSG00000040594,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11970,cg00462525,0.0000783,0.00000526,14.86984025,3.99E-38,gain,yes,0.0000105,0.00000894,1.175570817,0.240668484,pos,ns,0.00970091,0.00261961,3.703188409,0.000251975,pos,ns,3.598642679,0.0000776,0.0000901,0.861422041,0.389671446,pos,ns,0.152513404,Tbr1,Tbr1_Exon,2,61807272,61807321,61807272,61807273,50,+,CGGACAGATGGTGGTTTTACAGTCCTTGCACAAGTACCAGCCCCGCCTGC,"Exon (Tbr1-201/Tbr1, exon 4 of 6)",2,61804453,61814114,9662,1,Tbr1-201,2819,Tbr1-204;Tbr1-201;Tbr1-202;Tbr1-203,Tbr1;Tbr1;Tbr1;Tbr1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,24,27,21375,ENSMUSG00000035033,conserved gene and region,2,61807120,61807273,154,*,154,15,0.688311688,0.822649573,0.097402597,1.39E-11,CpGisland,TRUE,U13,Hc-P
10291,cg11439618,0.00016745,0.0000121,13.82303256,3.46E-34,gain,yes,-0.0000242,0.0000206,-1.175426875,0.240725952,neg,ns,0.015252347,0.006029169,2.529759311,0.01190926,pos,ns,1.924115241,-0.000206972,0.000207343,-0.998211005,0.318955576,neg,ns,0.161704219,Lgi2,Lgi2_Exon,5,52565963,52566012,52566011,52566012,50,-,CCCACGCAGATGATAGACTCCTTGGTACAGCTGCAAGTGGCGGGGCAGCG,Promoter (<=1kb),5,52533517,52566303,32787,2,Lgi2-202,291,Lgi2-202;Lgi2-201,Lgi2;Lgi2,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,246316,ENSMUSG00000039252,conserved gene and region,5,52565831,52566434,604,*,604,81,0.773178808,0.903623804,0.13410596,3.68E-73,CpGisland,TRUE,U3,Pr-B
8854,cg02188623,0.00000668,0.00000328,2.03983327,0.042214363,gain,ns,-0.00000654,0.00000556,-1.17519425,0.240818846,neg,ns,-0.000379939,0.001630272,-0.233052705,0.815874283,neg,ns,0.088376756,-0.000012,0.0000561,-0.214848365,0.830026812,neg,ns,0.837961772,Ldb1,Ldb1_Exon,19,46034882,46034931,46034930,46034931,50,-,CACGTCTTTATCCGCATCATGTCGTCAAACATGAACTCCAGGTACAACCG,"Exon (Ldb1-207/Ldb1, exon 7 of 11)",19,46031570,46045210,13641,2,Ldb1-207,10279,Ldb1-207;Ldb1-206;Ldb1-202;Ldb1-208;Ldb1-201;Ldb1-205;Ldb1-203;Ldb1-204,Ldb1;Ldb1;Ldb1;Ldb1;Ldb1;Ldb1;Ldb1;Ldb1,0;0;0;0;0;0;-4;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,9,16825,ENSMUSG00000025223,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8453,cg25838870,0.0000663,0.0000102,6.528944886,2.71E-10,gain,yes,0.0000203,0.0000173,1.1751818,0.240823819,pos,ns,0.014348545,0.005053666,2.83923496,0.004820905,pos,ns,2.316871458,-0.000100546,0.000173795,-0.578533752,0.563323882,neg,ns,0.354572483,Zeb2,Zeb2_Intron,2,45158368,45158417,45158368,45158369,50,+,CGGGCTTTTTGTAGCATCCTAAACAGAAGGATATTGCAGGGAGCTGATTC,"Intron (Gm28643-201/Gm28643-201, intron 1 of 1)",2,45116441,45117395,955,2,Zeb2-230,-40973,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21218,cg20605321,-0.00000311,0.00000139,-2.243947153,0.025541348,loss,ns,0.00000277,0.00000236,1.175022792,0.240887331,pos,ns,0.002363225,0.000690291,3.423519244,0.000701274,pos,ns,3.154112403,-0.0000553,0.0000237,-2.330347819,0.020429211,neg,ns,0.026768979,Acot11,Acot11_Intergenic_upstream,4,106827930,106827979,106827930,106827931,50,+,CGCTCTGCAGACACCCCCTGGTGGAAACAGCTCATTACGGGATGGAGAAA,Distal Intergenic,4,106747235,106804998,57764,2,Acot11-201,-22932,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,3,329910,ENSMUSG00000034853,conserved gene and region,4,106827860,106827968,109,*,109,9,0.688073395,0.7848,0.082568807,0.0000019,CpGisland,TRUE,NA,NRS
6664,cg10414058,0.0000793,0.00000936,8.480295984,9.31E-16,gain,yes,-0.0000187,0.0000159,-1.174979185,0.240904751,neg,ns,0.003330069,0.004656238,0.715184445,0.475033352,pos,ns,0.323275897,-0.000109288,0.000160128,-0.682503768,0.495430133,neg,ns,0.384639551,Rell2,Rell2_Exon,18,37956446,37956495,37956494,37956495,50,+,TGTGCTGGTCTTCTTCCTCATGGGCCTGGTAGGCTTCATGATCTGCCACG,"Exon (Rell2-203/Rell2, exon 1 of 4)",18,37955079,37958545,3467,1,Rell2-203,1367,Fchsd1-204;Fchsd1-201;Hdac3-201;Hdac3-206;Hdac3-205;Rell2-203;Rell2-207;Rell2-211;Rell2-210;Rell2-201;Rell2-212;Rell2-208;Rell2-204;Rell2-202;Rell2-209;Rell2-213;Rell2-215;Rell2-205;Rell2-206;Rell2-214,Fchsd1;Fchsd1;Hdac3;Hdac3;Hdac3;Rell2;Rell2;Rell2;Rell2;Rell2;Rell2;Rell2;Rell2;Rell2;Rell2;Rell2;Rell2;Rell2;Rell2;Rell2,3976;13279;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;-198;-239;-318,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,2,225392,ENSMUSG00000044024,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21225,cg15952296,0.0000204,0.0000197,1.036265744,0.300885836,gain,ns,-0.0000393,0.0000334,-1.174962957,0.240911234,neg,ns,-0.022479446,0.009794972,-2.2949986,0.022400968,neg,ns,1.649733206,0.000647243,0.000336848,1.921468415,0.055589355,pos,ns,0.561150499,Mpped2,Mpped2_Exon,2,106861493,106861542,106861493,106861494,50,+,CGTGGTTTAATGGATGGGGCTTTAACCTACCCAGAGGTCAGTCTCTGCTG,"Exon (Mpped2-202/Mpped2, exon 5 of 7)",2,106693269,106868356,175088,1,Mpped2-202,168224,Mpped2-202;Mpped2-201;Mpped2-204,Mpped2;Mpped2;Mpped2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,16,33,77015,ENSMUSG00000016386,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5055,cg13466649,0.00000301,0.00000636,0.473139818,0.63644641,gain,ns,-0.0000127,0.0000108,-1.174897593,0.240937347,neg,ns,-0.008384545,0.003167206,-2.647300509,0.008528424,neg,ns,2.069131212,0.000317308,0.00010892,2.913217795,0.003837224,pos,ns,0.885693225,Nrg1,Nrg1_Intron,8,32069247,32069296,32069295,32069296,50,-,AGGCTGCTGAAACCATCAATCTTGCTGGCTCTTGTAGAGGTCAAGAGACG,"Intron (Nrg1-218/Nrg1, intron 1 of 12)",8,31817403,32884254,1066852,2,Nrg1-218,814958,Nrg1-218;Nrg1-219;Nrg1-217;Nrg1-225;Nrg1-229;Nrg1-222,Nrg1;Nrg1;Nrg1;Nrg1;Nrg1;Nrg1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,5,211323,ENSMUSG00000062991,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17388,cg21398335,1.19E-08,0.00000158,0.007508365,0.994014077,gain,ns,0.00000316,0.00000269,1.174858417,0.240952999,pos,ns,0.001841087,0.000788769,2.334128158,0.020227629,pos,ns,1.694055019,-0.0000471,0.0000271,-1.736347394,0.083495903,neg,ns,0.957802175,Ubap2l,Ubap2l_Exon,3,90009155,90009204,90009203,90009204,50,-,GACCCCTGTATAGTATGGCAGGCTGGTGTAACTGTAGCCAGGAGGCAGCG,"Exon (Ubap2l-215/Ubap2l, exon 23 of 27)",3,90000140,90052455,52316,2,Ubap2l-215,43251,Ubap2l-215;Ubap2l-201;Ubap2l-202;Ubap2l-208;Ubap2l-203;Ubap2l-211;Ubap2l-204;Ubap2l-220;Ubap2l-207,Ubap2l;Ubap2l;Ubap2l;Ubap2l;Ubap2l;Ubap2l;Ubap2l;Ubap2l;Ubap2l,0;0;0;0;0;0;0;0;7089,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,15,74383,ENSMUSG00000042520,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10307,cg05734144,0.0000679,0.0000222,3.051955662,0.002470265,gain,ns,-0.0000444,0.0000378,-1.174763555,0.240990903,neg,ns,0.113189013,0.011068433,10.22629051,2.42E-21,pos,yes,20.61678675,-0.003599872,0.000380642,-9.457357049,8.17E-19,neg,yes,0.573669094,Hibadh,Hibadh_Intergenic_upstream,6,52673855,52673904,52673855,52673856,50,-,CGTGTCACAAGGGGAACTGTTAACAAGTGTTACTTTGCCAATGGTAGGAA,Distal Intergenic,6,52546228,52640389,94162,2,Hibadh-201,-33515,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,13,58875,ENSMUSG00000029776,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23763,cg14159149,-0.0000149,0.00000343,-4.355219323,0.0000181,loss,ns,-0.00000685,0.00000583,-1.174746934,0.240997545,neg,ns,0.002493106,0.001707265,1.460292837,0.145222308,pos,ns,0.837966665,-0.0000603,0.0000587,-1.026725164,0.305350361,neg,ns,0.086785763,Foxo6,Foxo6_Intron,4,120282926,120282975,120282974,120282975,50,-,GCCAGCAACTGTGCCAGGAGCGGCTGGCACGGGCTCGTGCCCAGGAGGCG,"Intron (Foxo6-201/Foxo6, intron 1 of 1)",4,120267079,120287349,20271,2,Foxo6-201,4374,Foxo6-201,Foxo6,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,14,42,329934,ENSMUSG00000052135,conserved gene and region,4,120282454,120283157,704,*,704,60,0.700284091,0.697259822,0.085227273,2.40E-41,CpGisland,TRUE,U3,Pr-B
21205,cg10739250,-0.00000149,0.000000988,-1.503221201,0.133800032,loss,ns,0.00000197,0.00000168,1.174699633,0.241016446,pos,ns,-0.000349299,0.000491908,-0.71009006,0.478182097,neg,ns,0.320406687,0.0000185,0.0000169,1.092528838,0.275449029,pos,ns,0.980000865,Mpped2,Mpped2_Exon,2,106744876,106744925,106744924,106744925,50,-,GGTTAGGTAAGGAATGATTGCGTTCTGGCGGCCCCAATTAACCTTTCCCG,"Exon (Mpped2-202/Mpped2, exon 3 of 7)",2,106693269,106868356,175088,1,Mpped2-202,51607,Mpped2-202;Mpped2-206;Mpped2-201;Mpped2-203;Mpped2-204;Mpped2-205,Mpped2;Mpped2;Mpped2;Mpped2;Mpped2;Mpped2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,Exon,16,33,77015,ENSMUSG00000016386,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11380,cg08275016,-0.0000132,0.00000374,-3.524334171,0.00048852,loss,ns,-0.00000747,0.00000636,-1.174610536,0.241052053,neg,ns,0.000269185,0.001862111,0.144559064,0.885152955,pos,ns,0.052981676,-0.0000533,0.000064,-0.832917811,0.405532322,neg,ns,0.9420367,Pakap,Pakap_threeUTR,4,57883119,57883168,57883119,57883120,50,+,CGGCCCAAGAATCTGATGCAGACCCTCATGGAAGACTATGAGACACACAA,3' UTR,4,57568179,57896982,328804,1,Pakap-211,314940,Pakap-211;Pakap-213;Pakap-207;Pakap-205;Pakap-206;Pakap-201;Pakap-202;Pakap-204,Pakap;Pakap;Pakap;Pakap;Pakap;Pakap;Pakap;Pakap,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,4,677884,ENSMUSG00000038729,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14314,cg10869352,0.0000243,0.00000685,3.545682662,0.000452028,gain,ns,-0.0000137,0.0000116,-1.174481964,0.241103442,neg,ns,-0.000747206,0.003411222,-0.219043473,0.826760329,neg,ns,0.082620371,-0.000178551,0.000117312,-1.522022982,0.12902269,neg,ns,0.762085658,Sv2b,Sv2b_Exon,7,75149029,75149078,75149029,75149030,50,-,CGATGACAAACACTCTCCAGCTATGGAAGTGGTAATTGGTCCCCATGCTG,"Exon (Sv2b-202/Sv2b, exon 5 of 13)",7,75114894,75309262,194369,2,Sv2b-202,160184,Sv2b-202;Sv2b-201;Sv2b-204;Sv2b-207,Sv2b;Sv2b;Sv2b;Sv2b,0;0;0;-1303,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,64176,ENSMUSG00000053025,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3957,cg13806356,0.0000305,0.00000487,6.261637827,1.27E-09,gain,yes,-0.00000972,0.00000828,-1.174470743,0.241107927,neg,ns,-0.001497692,0.002425125,-0.617572964,0.53731025,neg,ns,0.269774874,0.0000849,0.0000834,1.017625323,0.309649584,pos,ns,0.80922897,Kcnt1,Kcnt1_Exon,2,25912659,25912708,25912659,25912660,50,+,CGTAGCAAATTTAACAGCCAGTGATGTCATGAATCGGGTAAACCTGGGAT,"Exon (Kcnt1-211/Kcnt1, exon 30 of 32)",2,25863734,25917045,53312,1,Kcnt1-213,48925,Kcnt1-213;Kcnt1-211;Kcnt1-215;Kcnt1-203;Kcnt1-204;Kcnt1-206;Kcnt1-201;Kcnt1-212;Kcnt1-207;Kcnt1-210;Kcnt1-208;Kcnt1-214,Kcnt1;Kcnt1;Kcnt1;Kcnt1;Kcnt1;Kcnt1;Kcnt1;Kcnt1;Kcnt1;Kcnt1;Kcnt1;Kcnt1,0;0;0;0;0;0;0;0;0;9157;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,227632,ENSMUSG00000058740,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25427,cg02497241,-0.00000106,0.000000961,-1.098706183,0.27274882,loss,ns,0.00000192,0.00000163,1.174347119,0.241157346,pos,ns,0.000912661,0.000478506,1.907312015,0.05740423,pos,ns,1.241056103,-0.00000753,0.0000165,-0.457775949,0.647434106,neg,ns,0.032894103,Luzp1,Luzp1_Intron,4,136470801,136470850,136470849,136470850,50,-,CCCCTTTCCTAACACTGCAGAGCTTGTTGTGGCTTGTTTCGGGAATGCCG,"Intron (Luzp1-207/Luzp1, intron 1 of 4)",4,136469761,136549315,79555,1,Luzp1-207,1040,Luzp1-207;Luzp1-203;Luzp1-205;Luzp1-204,Luzp1;Luzp1;Luzp1;Luzp1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,269593,ENSMUSG00000001089,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
3167,cg10190764,0.0000079,0.00000379,2.086164055,0.037780944,gain,ns,0.00000756,0.00000643,1.174334868,0.241162244,pos,ns,0.000786644,0.001885177,0.41727887,0.676763273,pos,ns,0.169563218,-0.0000523,0.0000648,-0.806256442,0.420713067,neg,ns,0.918613446,Gm11879,Gm11879_Intergenic_downstream,4,23050952,23051001,23051000,23051001,50,-,GTTTGCATAAAGCAAACAAAATTAGATTTGCTTTGCTGAATTGAAACCCG,Distal Intergenic,4,22704057,22704758,702,1,Gm11879-201,346944,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,19,19,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26851,cg16557106,-0.00000142,0.00000277,-0.514802828,0.607057659,loss,ns,0.00000552,0.0000047,1.174238569,0.241200746,pos,ns,-0.000352205,0.001377284,-0.255724281,0.798333341,neg,ns,0.097815733,-0.00000519,0.0000474,-0.109501469,0.912875606,neg,ns,0.960897587,Asxl1,Asxl1_Exon,2,153399251,153399300,153399251,153399252,50,+,CGTATCAAACCACCCTGGGTGGTTAAAGGTCAGCCCACTTACCAGATATG,"Exon (Asxl1-205/Asxl1, exon 12 of 12)",2,153345829,153404007,58179,1,Asxl1-205,53422,Asxl1-205;Asxl1-201;Asxl1-203,Asxl1;Asxl1;Asxl1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,8,228790,ENSMUSG00000042548,conserved gene and region,2,153399251,153399485,235,*,235,15,0.65106383,0.604423868,0.063829787,6.19E-09,CpGisland,TRUE,U10,Tr-S
380,cg12071463,0.00000502,0.0000029,1.734391642,0.083842655,gain,ns,0.00000577,0.00000492,1.173899891,0.241336187,pos,ns,0.005316635,0.001441078,3.689344646,0.000265473,pos,ns,3.575978923,-0.000143103,0.0000496,-2.887557602,0.004155475,neg,ns,0.93402987,Zfhx4,Zfhx4_Intron,3,5281905,5281954,5281905,5281906,50,+,CGGAACTGGCAGTGACCAAAAGGCCCTCATCAAGCAACCCAGCCTGACCT,"Intron (Zfhx4-203/Zfhx4, intron 3 of 10)",3,5218526,5413165,194640,1,Zfhx4-203,63379,Zfhx4-203;Zfhx4-202;Zfhx4-201;Zfhx4-205,Zfhx4;Zfhx4;Zfhx4;Zfhx4,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,27,77,80892,ENSMUSG00000025255,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6599,cg24117712,0.0000671,0.00000501,13.38971297,1.41E-32,gain,yes,0.00000999,0.00000851,1.173843092,0.241358907,pos,ns,0.012471527,0.00249439,4.999829647,0.000000962,pos,ns,6.016885276,-0.000254121,0.0000858,-2.962408032,0.003288571,neg,ns,0.09371986,Msx1,Msx1_Exon,5,37823040,37823089,37823040,37823041,50,+,CGGAGGAAACGAGGAAAACTTGGGAATTTCCCGTGCTCCTGAAATATCTC,"Exon (Msx1-202/Msx1, exon 1 of 1)",5,37820485,37824583,4099,2,Msx1-201,1494,Msx1-201;Msx1-202,Msx1;Msx1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,14,17701,ENSMUSG00000048450,conserved gene but different region,5,37822962,37823200,239,*,239,16,0.506276151,1.045379989,0.066945607,8.43E-10,CpGisland,TRUE,NA,NRS
8449,cg00741609,0.0000322,0.00000897,3.589209293,0.000385402,gain,ns,-0.0000179,0.0000152,-1.173668249,0.241428855,neg,ns,0.01162696,0.004466896,2.602916974,0.009687805,pos,ns,2.013774602,-0.000137006,0.000153616,-0.891872834,0.373152836,neg,ns,0.149109809,Tlx1,Tlx1_fiveUTR,19,45153509,45153558,45153509,45153510,50,+,CGTATAGGTCACCCCTATCAGAACCGGACGCCCCCCAAGAAGAAGAAGCC,5' UTR,19,45150680,45156943,6264,1,Tlx1-201,2829,Tlx1-201;Tlx1-202,Tlx1;Tlx1,0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,7,21908,ENSMUSG00000025215,conserved gene but different region,19,45153395,45153856,462,*,462,38,0.612554113,0.880794702,0.082251082,8.03E-26,CpGisland,TRUE,U13,Hc-P
432,cg03167448,0.0000116,0.00000662,1.751514195,0.080846292,gain,ns,-0.0000132,0.0000112,-1.173592229,0.241459272,neg,ns,0.000888163,0.003294171,0.269616436,0.787634733,pos,ns,0.103675141,0.000123514,0.000113286,1.090285251,0.276434256,pos,ns,0.838595573,Zeb1,Zeb1_threeUTR,18,5759084,5759133,5759132,5759133,50,-,AGTTGCTCCCTGTGCAGTTACACCTTTGCATACAGAACCCAACTTGAACG,3' UTR,18,5591864,5775467,183604,1,Zeb1-201,167220,Zeb1-201;Zeb1-202;Zeb1-209;Zeb1-206;Zeb1-205;Zeb1-211;Zeb1-207;Zeb1-210,Zeb1;Zeb1;Zeb1;Zeb1;Zeb1;Zeb1;Zeb1;Zeb1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,threeUTR,2,7,21417,ENSMUSG00000024238,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14928,cg20376497,0.0000728,0.0000049,14.86986966,3.99E-38,gain,yes,-0.00000977,0.00000832,-1.173582,0.241463365,neg,ns,0.008406427,0.002438334,3.447611131,0.000643726,pos,ns,3.191298986,-0.000137587,0.0000839,-1.64078862,0.101855481,neg,ns,0.09348808,Nr2f1,Nr2f1_Exon,13,78181314,78181363,78181314,78181315,50,+,CGCCGGCGCCCAGGATAAGCCAGTGGGGTGATAATTAATGGAATACAATA,"Exon (3110006O06Rik-201/3110006O06Rik-201, exon 2 of 2)",13,78189872,78190443,572,2,Nr2f1-204,9080,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,25,55,13865,ENSMUSG00000069171,conserved gene and region,13,78181019,78181341,323,*,323,26,0.643962848,0.783687943,0.080495356,1.33E-17,CpGisland,TRUE,U3,Pr-B
12581,cg03529162,-0.0000147,0.0000081,-1.816219502,0.070302502,loss,ns,-0.0000161,0.0000138,-1.173325814,0.241565891,neg,ns,0.02079589,0.004029987,5.160287343,0.000000441,pos,ns,6.355449673,-0.000782907,0.000138591,-5.649053356,3.65E-08,neg,yes,0.395711549,Scn3a,Scn3a_Exon,2,65508413,65508462,65508461,65508462,50,-,TTGCTGGAAGCCCTGGCACCATCCTGGATGACATACTGGCCTGACTAACG,"Exon (Scn3a-201/Scn3a, exon 12 of 27)",2,65457118,65567492,110375,2,Scn3a-201,59030,Scn3a-201;Scn3a-202;Scn3a-206;Scn3a-208;Scn3a-207,Scn3a;Scn3a;Scn3a;Scn3a;Scn3a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,20269,ENSMUSG00000057182,conserved gene and region,2,65508461,65508647,187,*,187,12,0.534759358,0.910714286,0.064171123,0.000000285,CpGisland,TRUE,U15,NS
3923,cg14846134,-0.00000571,0.00000371,-1.537371482,0.125222391,loss,ns,-0.0000074,0.00000631,-1.173213584,0.241610815,neg,ns,-0.001443261,0.001848656,-0.780708367,0.43556978,neg,ns,0.36094226,-0.0000501,0.0000636,-0.788291963,0.431128325,neg,ns,0.92425411,Gm7847,Gm7847_Intergenic_downstream,18,25791862,25791911,25791862,25791863,50,-,CGAAGGGCCCTTTAACCTAAATGGTGTGCTTTCTGTAATGTCTTTGGTTA,Distal Intergenic,18,25823581,25824357,777,2,Gm7847-201,32495,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,22,665916,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13735,cg27613904,-0.00000358,0.00000429,-0.833747271,0.40506537,loss,ns,-0.00000855,0.00000728,-1.173063667,0.241670835,neg,ns,-0.005032008,0.002134128,-2.357875935,0.019000748,neg,ns,1.721229308,0.0000436,0.0000734,0.593713774,0.553136531,pos,ns,0.894931266,Gm4052,Gm4052_Intergenic_upstream,13,72298794,72298843,72298842,72298843,50,-,TTTGAATGGAGACGGGAACACAAGCTCCCCTTTATCAAATTACAAGTCCG,Distal Intergenic,13,72350221,72350671,451,1,Gm4052-201,-51427,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,16,16,100042828,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15645,cg12401251,0.0000629,0.0000162,3.88192633,0.000126655,gain,ns,-0.0000323,0.0000275,-1.173009171,0.241692655,neg,ns,0.027573949,0.008058163,3.421865254,0.000705396,pos,ns,3.151567105,-0.000915616,0.00027712,-3.304046171,0.001064625,neg,ns,0.457729567,Nfib,Nfib_Exon,4,82498466,82498515,82498514,82498515,50,-,TCTGGTCGGGATTGGATAAGACACAGCACGGGTGCTTCTTGCCAGTCACG,"Exon (Nfib-201/Nfib, exon 2 of 12)",4,82290173,82505308,215136,2,Nfib-201,6793,Nfib-201;Nfib-203;Nfib-202;Nfib-205;Nfib-206;Nfib-204;Nfib-207;Nfib-209;Nfib-210;Nfib-208;Nfib-212;Nfib-211,Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,14,66,18028,ENSMUSG00000008575,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20242,cg08900043.1,0.000100684,0.00000927,10.85688524,1.74E-23,gain,yes,0.0000185,0.0000158,1.172948538,0.241716934,pos,ns,0.011135444,0.00461564,2.412546042,0.016421836,pos,ns,1.784578284,0.00000198,0.000158731,0.012446173,0.990077653,pos,ns,0.147616782,Hoxc10,Hoxc10_Promoter,15,102966662,102966711,102966710,102966711,50,-,CATTTTCAAATCCCATTGGTCTAGCCGTCACATGGTGAGAACCGAATGCG,Promoter (<=1kb),15,102966796,102971893,5098,1,Hoxc10-201,-134,Hoxc10-201;Hoxc5-202,Hoxc10;Hoxc5,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,8,21,209448,ENSMUSG00000022484,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18306,cg19298873,0.000152883,0.0000131,11.66130659,2.67E-26,gain,yes,-0.0000261,0.0000223,-1.172538097,0.24188133,neg,ns,0.022325347,0.006525143,3.421434147,0.000706474,pos,ns,3.150903844,-0.000197933,0.000224399,-0.882057839,0.378428951,neg,ns,0.209168058,Gm48316,Gm48316_Intergenic_upstream,13,94707032,94707081,94707080,94707081,50,+,CATTGACACTGGATGGATGGGGCTAATCTGGCGCAGAACTGGCGGCTTCG,Distal Intergenic,13,94752270,94752593,324,1,Gm48316-201,-45189,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,36,42,,NA,mapped to different genes,13,94707063,94707220,158,*,158,11,0.5,1.114102564,0.069620253,0.000000471,CpGisland,TRUE,U13,Hc-P
8024,cg16576961,-0.00000775,0.0000151,-0.513623819,0.607880904,loss,ns,0.00003,0.0000256,1.17249571,0.241898312,pos,ns,-0.003601937,0.007505467,-0.47990839,0.631630963,neg,ns,0.199536588,0.000343293,0.000258112,1.330013977,0.184491367,pos,ns,0.283035846,Pax2,Pax2_Intergenic_upstream,19,44695817,44695866,44695817,44695818,50,+,CGTGAAATTACAAAAGTAAAATTTGTGGGACTCGGGAGGGGCTGAGAAGG,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-60179,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9354,cg25343339,0.000108641,0.000017,6.397861327,5.81E-10,gain,yes,-0.0000338,0.0000288,-1.172392282,0.241939753,neg,ns,0.03467709,0.008451524,4.103057727,0.0000522,pos,ns,4.28257325,-0.000547459,0.000290647,-1.883586499,0.0605568,neg,ns,0.352798083,Invs,Invs_Intron,4,48335445,48335494,48335493,48335494,50,+,GATAAAGTGCTGTCTAATTTGGTAGGTTTGCTTCTGTCAGAGCAGCCTCG,"Intron (Invs-201/Invs, intron 3 of 16)",4,48279802,48431954,152153,1,Invs-201,55643,Invs-201;Invs-203,Invs;Invs,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,3,16348,ENSMUSG00000028344,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17517,cg09206182,-0.0000249,0.0000079,-3.148457323,0.001801137,loss,ns,0.0000157,0.0000134,1.17237085,0.241948341,pos,ns,-0.005768922,0.003929604,-1.46806685,0.143099958,neg,ns,0.844360493,0.0000745,0.000135139,0.551004379,0.582027558,pos,ns,0.787684832,Gm2497,Gm2497_Intergenic_downstream,9,90693402,90693451,90693402,90693403,50,+,CGTTGTTAGGGCAAGTGCTACCATCTGAGACGTTAGTGATCCTTGAATTT,Distal Intergenic,9,90732924,90733524,601,2,Gm2497-201,40073,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,9,100039925,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1158,cg20273694,-0.00000681,0.00000196,-3.467224002,0.000600169,loss,ns,-0.00000391,0.00000334,-1.172221202,0.242008312,neg,ns,0.00012086,0.000977101,0.123692289,0.901639077,pos,ns,0.044967274,-0.0000583,0.0000336,-1.736121829,0.083535835,neg,ns,0.9495517,Patl1,Patl1_Exon,19,11920811,11920860,11920859,11920860,50,+,CCAGGAAGTCTGAATTCCAGTATCTGGGATGGATCTGAAGTTCTGAGGCG,"Exon (Patl1-201/Patl1, exon 4 of 19)",19,11912399,11945091,32693,1,Patl1-201,8412,Patl1-201;Patl1-202,Patl1;Patl1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,225929,ENSMUSG00000046139,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26306,cg08237514,0.00012237,0.0000172,7.114723993,7.81E-12,gain,yes,-0.0000342,0.0000292,-1.172114035,0.242051265,neg,ns,0.027846446,0.008560355,3.25295469,0.001268096,pos,ns,2.896848005,-0.00097638,0.00029439,-3.316621191,0.001019428,neg,ns,0.208201337,Ralgapa2,Ralgapa2_Intron,2,146325525,146325574,146325573,146325574,50,-,TGCAATTTAAATACCAGGGACTGAAGCCAAACAAACAGACTTTCCCTCCG,"Intron (Ralgapa2-202/Ralgapa2, intron 37 of 40)",2,146239879,146512004,272126,2,Ralgapa2-202,186430,Ralgapa2-202;Ralgapa2-211;Ralgapa2-210;Ralgapa2-205;Ralgapa2-208,Ralgapa2;Ralgapa2;Ralgapa2;Ralgapa2;Ralgapa2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,26,241694,ENSMUSG00000037110,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17000,cg13060540,0.0000231,0.00000705,3.274698831,0.001177448,gain,ns,0.000014,0.000012,1.17194376,0.242119523,pos,ns,-0.001470014,0.003510304,-0.41877107,0.675673442,neg,ns,0.170263151,-0.000136097,0.000120719,-1.127384266,0.260451896,neg,ns,0.663591257,Gm9541,Gm9541_Intergenic_downstream,9,87824777,87824826,87824825,87824826,50,+,CACAAACATCTGAGAAACATCTGTAGACAAAATGCCAAAATGCATAGTCG,Distal Intergenic,9,87769770,87770271,502,1,Gm9541-201,55007,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,3,671731,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22766,cg22825448,0.0000119,0.00000796,1.492753205,0.136518811,gain,ns,0.0000158,0.0000135,1.171928322,0.242125712,pos,ns,-0.005510366,0.00396156,-1.39095866,0.165235514,neg,ns,0.781896603,0.000300238,0.000136238,2.203781161,0.028274623,pos,ns,0.929722991,Dmbx1,Dmbx1_Intron,4,115932074,115932123,115932074,115932075,50,-,CGGCGGATCTCCCGCCACAGGCGCCATATAGATGGCTTTAATTTTCCAAA,"Intron (Dmbx1-203/Dmbx1, intron 1 of 4)",4,115915119,115939926,24808,2,Dmbx1-203,7803,Dmbx1-203;Dmbx1-202,Dmbx1;Dmbx1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,42,140477,ENSMUSG00000028707,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
21921,cg13339029,5.29E-08,0.00000281,0.018827253,0.984991025,gain,ns,0.00000559,0.00000477,1.171893199,0.242139794,pos,ns,0.003093874,0.001397932,2.213179773,0.027613314,pos,ns,1.558881464,-0.000106743,0.0000481,-2.220344853,0.027118207,neg,ns,0.940104136,Atxn1l,Atxn1l_threeUTR,8,109726441,109726490,109726441,109726442,50,-,CGCAAACACCAAAAGGAAAAGCTAGTAGTTTATATAGATAGATATATAGA,3' UTR,8,109726451,109737739,11289,2,Atxn1l-201,11249,Atxn1l-201;Atxn1l-202;Atxn1l-204;Zfp821-206;Zfp821-201;Zfp821-204;Zfp821-203;Zfp821-205,Atxn1l;Atxn1l;Atxn1l;Zfp821;Zfp821;Zfp821;Zfp821;Zfp821,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,4,52335,ENSMUSG00000069895,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1992,cg18527314,-0.00000398,0.00000439,-0.905293178,0.366013134,loss,ns,0.00000874,0.00000746,1.171809381,0.242173401,pos,ns,0.004727186,0.002185785,2.16269465,0.03132903,pos,ns,1.504053058,-0.000196853,0.0000752,-2.618801578,0.009257571,neg,ns,0.885564596,Ndp,Ndp_Intron,X,16908162,16908211,16908210,16908211,50,+,ATATAGCCAGCCAGCTGTTCAAAGGCTTACAACCTTGCTTTTATTGTCCG,"Intron (Ndp-201/Ndp, intron 1 of 2)",20,16885521,16911774,26254,2,Ndp-201,3563,Ndp-201,Ndp,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,5,17986,ENSMUSG00000040138,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23106,cg13607151,0.0000932,0.0000193,4.838848578,0.00000206,gain,ns,-0.0000384,0.0000327,-1.171793879,0.242179617,neg,ns,0.021531206,0.009591143,2.244905125,0.025479065,pos,ns,1.593816505,-0.000734182,0.000329839,-2.225882408,0.026740854,neg,ns,0.242431221,Rnf220,Rnf220_Intron,4,117304080,117304129,117304080,117304081,50,-,CGCTCCTTGGGAATTTATCACGCACCCAATTACAATGTTAATTGGCAAGT,"Intron (Rnf220-201/Rnf220, intron 3 of 14)",4,117271463,117497052,225590,2,Rnf220-201,192923,Rnf220-201;Rnf220-202;Rnf220-208;Rnf220-207,Rnf220;Rnf220;Rnf220;Rnf220,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,4,117303937,117304101,165,*,165,11,0.654545455,0.630208333,0.066666667,0.000000724,CpGisland,TRUE,NA,NRS
2172,cg17843149,-0.00000662,0.00000281,-2.350912508,0.01935354,loss,ns,0.0000056,0.00000478,1.171700413,0.242217097,pos,ns,0.002389042,0.001401,1.705240934,0.089151259,pos,ns,1.049872518,-0.000106308,0.0000482,-2.206460541,0.028084712,neg,ns,0.931703022,Kdm6a,Kdm6a_Exon,X,18199164,18199213,18199164,18199165,50,+,CGCTGCTATGAATCTCTAATCTTAAAAGCTGAAGGAAAAGTGGAGTCTGA,"Exon (Kdm6a-201/Kdm6a, exon 3 of 29)",20,18162575,18279936,117362,1,Kdm6a-201,36589,Kdm6a-201;Kdm6a-202;Kdm6a-209;Kdm6a-205;Kdm6a-203,Kdm6a;Kdm6a;Kdm6a;Kdm6a;Kdm6a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,14,22289,ENSMUSG00000037369,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13726,cg08341143,-0.0000589,0.0000111,-5.290100802,0.000000232,loss,yes,0.0000221,0.0000189,1.171690493,0.242221075,pos,ns,-0.010544623,0.005537775,-1.904126449,0.057819379,neg,ns,1.237926578,-0.000104071,0.000190444,-0.5464646,0.585139705,neg,ns,0.827125754,Gm4052,Gm4052_Intergenic_upstream,13,72265773,72265822,72265773,72265774,50,+,CGCATAACATCAACAATTTAATGGGTTGGAAGGCTCGTGTTTGCATTACA,Distal Intergenic,13,72350221,72350671,451,1,Gm4052-201,-84399,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,16,16,100042828,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8080,cg09227150,-0.000000425,0.00000183,-0.231908084,0.816762416,loss,ns,0.00000365,0.00000311,1.171687485,0.242222282,pos,ns,0.002033905,0.000911605,2.231124753,0.026387825,pos,ns,1.578596403,-0.0000256,0.0000314,-0.816667615,0.414745536,neg,ns,0.04280299,Pax2,Pax2_Intergenic_upstream,19,44726372,44726421,44726372,44726373,50,+,CGTGTGTGTTTTTATTATTATTATTTCTGATTAAAGAGGAATTCATCTCG,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-29624,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15079,cg04291190,0.0000411,0.00000342,12.02274807,1.38E-27,gain,yes,-0.00000681,0.00000581,-1.171645375,0.24223917,neg,ns,0.000940359,0.00170342,0.552041576,0.581317621,pos,ns,0.235586512,0.0000524,0.0000586,0.895006235,0.371478141,pos,ns,0.092433216,Zfp827,Zfp827_Promoter,8,79028366,79028415,79028414,79028415,50,-,CACACACTCACACCTATTAGATCCGTTTCCATTGAAGAATATTACGCTCG,Promoter (<=1kb),8,79028437,79193743,165307,1,Zfp827-202,-71,Zfp827-201;Zfp827-202;Zfp827-203;Zfp827-209,Zfp827;Zfp827;Zfp827;Zfp827,0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,10,28,622675,ENSMUSG00000071064,conserved gene but different region,8,79028199,79028434,236,*,236,23,0.588983051,1.130833333,0.097457627,1.44E-17,CpGisland,TRUE,U1,Pr-A
13711,cg25759202,-0.00000288,0.00000324,-0.889777767,0.374275194,loss,ns,-0.00000644,0.0000055,-1.171558085,0.242274179,neg,ns,0.002922793,0.001610457,1.814883901,0.070508083,pos,ns,1.151761094,0.0000105,0.0000554,0.190129294,0.849332255,pos,ns,0.940015468,Rapgef4,Rapgef4_Intron,2,72200891,72200940,72200939,72200940,50,+,TCTCTGACCGTTCCAGCCCTTGACTTTGAAAATGACTTAATTTGTAGACG,"Intron (Rapgef4-202/Rapgef4, intron 14 of 30)",2,71981240,72257474,276235,1,Rapgef4-202,219651,Rapgef4-202;Rapgef4-203;Rapgef4-201;Rapgef4-204;Rapgef4-210;Rapgef4-211,Rapgef4;Rapgef4;Rapgef4;Rapgef4;Rapgef4;Rapgef4,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,11,56508,ENSMUSG00000049044,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5094,cg04163896,0.0000575,0.0000102,5.654284119,3.55E-08,gain,yes,-0.0000202,0.0000173,-1.171551023,0.242277011,neg,ns,0.018713053,0.005059724,3.698433475,0.000256537,pos,ns,3.590850621,-0.000778503,0.000174003,-4.474065096,0.0000108,neg,ns,0.101344159,Bach2,Bach2_Intron,4,32303821,32303870,32303869,32303870,50,-,CATTCATCTGCTTTTCACGGCCCGTTTCCTTTTATTTTTAGCCAAATCCG,"Intron (Bach2-202/Bach2, intron 1 of 6)",4,32238804,32586104,347301,1,Bach2-202,65017,Bach2-202;Bach2-201;Bach2-205;Bach2-206,Bach2;Bach2;Bach2;Bach2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,14,12014,ENSMUSG00000040270,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18084,cg13900468,-0.00000464,0.00000121,-3.846788041,0.000145294,loss,ns,0.0000024,0.00000205,1.171534656,0.242283576,pos,ns,-0.000339798,0.000600962,-0.565423325,0.572194855,neg,ns,0.242456052,0.0000106,0.0000207,0.513263155,0.608132838,pos,ns,0.972222626,Magi1,Magi1_Exon,6,93680828,93680877,93680876,93680877,50,+,CCCGAGCTTTTCATTTCTCATACATGCAGCGATATTAGGAGGTATCATCG,"Exon (Magi1-201/Magi1, exon 21 of 22)",6,93675455,94283322,607868,2,Magi1-201,602445,Magi1-201;Magi1-202;Magi1-208;Magi1-203;Magi1-206;Magi1-209;Magi1-205,Magi1;Magi1;Magi1;Magi1;Magi1;Magi1;Magi1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,18,14924,ENSMUSG00000045095,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14548,cg13785960,-8.82E-08,0.00000247,-0.035660289,0.971576186,loss,ns,-0.00000492,0.0000042,-1.171466164,0.24231105,neg,ns,-0.002186568,0.001231064,-1.776161403,0.076687112,neg,ns,1.115277616,0.0000592,0.0000423,1.39939222,0.16269522,pos,ns,0.955421516,Zbtb1,Zbtb1_Exon,12,76387096,76387145,76387096,76387097,50,-,CGTCAGTTGCGACTGCACAATGATATGCACAAAGGCATGGCCAGGTATGT,"Exon (Zbtb1-201/Zbtb1, exon 2 of 2)",12,76370266,76396950,26685,1,Zbtb1-201,16830,Zbtb1-201,Zbtb1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,5,268564,ENSMUSG00000033454,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19691,cg06337174,-0.00000736,0.0000023,-3.197062435,0.001531643,loss,ns,0.00000458,0.00000391,1.171441451,0.242320963,pos,ns,-0.000183117,0.001145449,-0.159864731,0.873091744,neg,ns,0.058940118,-0.0000303,0.0000394,-0.768284944,0.442902775,neg,ns,0.034934197,Stag1,Stag1_fiveUTR,9,100643613,100643662,100643661,100643662,50,+,ATTGGCGTGTGGAAAATGCCACCAGATGGCGGGTTAGGATTGCAGCTCCG,Promoter (<=1kb),9,100643613,100712690,69078,1,Stag1-204,0,Stag1-205;Stag1-213;Stag1-206;Stag1-210;Stag1-204;Stag1-212;Stag1-201;Stag1-208;Stag1-216;Stag1-203;Stag1-207,Stag1;Stag1;Stag1;Stag1;Stag1;Stag1;Stag1;Stag1;Stag1;Stag1;Stag1,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,6,15,20842,ENSMUSG00000037286,conserved gene and region,9,100642808,100644342,1535,*,1535,206,0.725732899,1.021439208,0.134201954,3.49E-185,CpGisland,TRUE,U1,Pr-A
3714,cg27038006,0.000000779,0.00000477,0.163400686,0.870309436,gain,ns,0.00000948,0.0000081,1.17110577,0.242455646,pos,ns,0.001168703,0.002372428,0.492619181,0.622630411,pos,ns,0.205769671,-0.000115531,0.0000816,-1.41603468,0.157769307,neg,ns,0.885957422,5730522E02Rik,5730522E02Rik_Intergenic_downstream,11,25132937,25132986,25132985,25132986,50,+,CATTCTCAGCTAATTGAGACATTCCCAAACAATTAAGATAACCAGATGCG,Distal Intergenic,11,25602816,25620098,17283,2,5730522E02Rik-205,487112,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,21,90,70626,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15883,cg22507359,0.0000621,0.0000103,6.058167773,3.99E-09,gain,yes,0.0000204,0.0000174,1.170907689,0.242535147,pos,ns,0.015094551,0.005104693,2.956994912,0.003345221,pos,ns,2.475575216,-0.000160192,0.00017555,-0.912514375,0.362207098,neg,ns,0.684346534,Gm6411,Gm6411_Intron,13,83741919,83741968,83741967,83741968,50,+,AGTGAATGACCAAGTTTCATTGTGCCCGCTTAAGTCGATTGAAATCTACG,"Intron (C130071C03Rik-204/C130071C03Rik-204, intron 3 of 3)",13,83761132,83762335,1204,2,Gm6411-201,20367,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,36,623241,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
23286,cg10420580,0.0000796,0.00000976,8.150815545,9.02E-15,gain,yes,0.0000194,0.0000166,1.170834357,0.242564583,pos,ns,0.013424815,0.004858031,2.763426903,0.006061754,pos,ns,2.217401722,-0.000276471,0.000167067,-1.654847484,0.09896747,neg,ns,0.626828582,Eri3,Eri3_Intron,4,117647488,117647537,117647488,117647489,50,+,CGTTTAATCCGGCCTTTGTAAGTGATTTTAAAGTACTTGAAAGGCAGCCG,"Intron (Eri3-201/Eri3, intron 7 of 8)",4,117550365,117674297,123933,1,Eri3-201,97123,Eri3-201;Eri3-206;Eri3-203,Eri3;Eri3;Eri3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,82,97,140546,ENSMUSG00000033423,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23187,cg02104733,0.0000764,0.00000829,9.206938532,5.17E-18,gain,yes,-0.0000165,0.0000141,-1.170822245,0.242569445,neg,ns,-0.004094526,0.00412818,-0.991847676,0.322045377,neg,ns,0.49208293,0.000155784,0.000141968,1.097316246,0.27335479,pos,ns,0.770284193,Rnf220,Rnf220_Intron,4,117411785,117411834,117411785,117411786,50,-,CGCAACATTTTATGCCAGGACTGTTCCTTTTGAAGGCAGCCTGGTGCTAC,"Intron (Rnf220-201/Rnf220, intron 2 of 14)",4,117271463,117497052,225590,2,Rnf220-201,85218,Rnf220-201;Rnf220-207,Rnf220;Rnf220,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10848,cg07456600,-0.000000687,0.00000435,-0.157849777,0.874677942,loss,ns,-0.00000866,0.00000739,-1.170766287,0.242591909,neg,ns,-0.003786931,0.002166332,-1.748084645,0.081439346,neg,ns,1.089165723,0.00000233,0.0000745,0.031258147,0.975083783,pos,ns,0.914506733,Vti1a,Vti1a_threeUTR,19,55627172,55627221,55627220,55627221,50,+,ATCATAAAAACTTGACAAGGAAATAATTGCGCATTGCCAGCAACTTGGCG,3' UTR,19,55316350,55627309,310960,1,Vti1a-202,310822,Vti1a-202;Vti1a-201,Vti1a;Vti1a,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,8,32,53611,ENSMUSG00000024983,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8089,cg26062249,0.000119544,0.00000905,13.21137571,6.46E-32,gain,yes,-0.000018,0.0000154,-1.170520899,0.242690438,neg,ns,0.01542618,0.004503563,3.425327628,0.000696793,pos,ns,3.156896425,-0.000115924,0.000154877,-0.748492935,0.454730381,neg,ns,0.304156702,Pax2,Pax2_Intergenic_upstream,19,44734482,44734531,44734482,44734483,50,+,CGGAGATGTTACTCCGGAGTTGGAGACGATGATAAATATGATAATTTGTA,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-21514,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,19,44734344,44734509,166,*,166,19,0.728915663,1.030718954,0.114457831,5.57E-16,CpGisland,TRUE,U13,Hc-P
22980,cg15543995,-0.00000042,0.00000209,-0.201306628,0.840590842,loss,ns,0.00000415,0.00000355,1.170481241,0.242706364,pos,ns,-0.000644184,0.001039233,-0.619864769,0.535802172,neg,ns,0.27099553,0.00000857,0.0000357,0.239830653,0.810620046,pos,ns,0.942986661,Cnot2,Cnot2_fiveUTR,10,116549110,116549159,116549158,116549159,50,+,AGGCAATCAAATAGAACTGTCACTCAAGGGTCGTGTCACAGGAAGGACCG,5' UTR,10,116485161,116581511,96351,2,Cnot2-210,32352,Cnot2-210;Cnot2-204;Cnot2-212;Cnot2-203;Cnot2-202;Cnot2-213;Cnot2-209;Cnot2-214;Cnot2-215;Cnot2-205;Cnot2-207;Cnot2-211;Cnot2-217;Cnot2-216;Cnot2-206;Cnot2-201;Cnot2-208;Cnot2-218,Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,6,15,72068,ENSMUSG00000020166,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27752,cg23505674,0.0000153,0.0000029,5.260825985,0.000000268,gain,yes,-0.00000577,0.00000493,-1.170455248,0.242716803,neg,ns,0.000876306,0.001444707,0.606562931,0.544584943,pos,ns,0.26393437,-0.0000348,0.0000497,-0.701377415,0.483593689,neg,ns,0.913239528,Rtel1,Rtel1_Exon,2,181351634,181351683,181351682,181351683,50,+,GTGTATGACAACTTTGGCCATGTCATCCGAGACGTGGCCCAGTTCTTCCG,"Exon (Rtel1-203/Rtel1, exon 25 of 33)",2,181319739,181356616,36878,1,Rtel1-203,31895,Rtel1-203;Rtel1-217;Rtel1-215;Rtel1-202;Rtel1-204;Rtel1-201;Rtel1-205;Rtel1-219;Rtel1-221;Rtel1-208;Rtel1-207;Rtel1-210;Rtel1-216;Rtel1-209;Rtel1-218;Rtel1-214;Rtel1-206;Rtel1-211;Rtel1-212;Rtel1-213,Rtel1;Rtel1;Rtel1;Rtel1;Rtel1;Rtel1;Rtel1;Rtel1;Rtel1;Rtel1;Rtel1;Rtel1;Rtel1;Rtel1;Rtel1;Rtel1;Rtel1;Rtel1;Rtel1;Rtel1,0;31881;0;0;0;0;0;0;15698;12523;2179;0;1506;-399;-2717;-3520;-4011;-4082;-4287;-4287,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,269400,ENSMUSG00000038685,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7441,cg25126385,0.000032,0.0000128,2.498922274,0.012974365,gain,ns,0.0000255,0.0000218,1.170218769,0.242811788,pos,ns,0.005297576,0.006379768,0.830371163,0.406967996,pos,ns,0.390439743,0.000490223,0.0002194,2.234384318,0.026170366,pos,ns,0.357960499,Ostm1,Ostm1_Intron,10,42636374,42636423,42636374,42636375,50,-,CGCCAGGATTATTCTGGACTGTAAGTTATCAAGAGCCCACTAATTTCACA,"Intron (Ostm1-202/Ostm1, intron 2 of 5)",10,42583835,42698323,114489,1,Ostm1-202,52539,Ostm1-202;Ostm1-203,Ostm1;Ostm1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,21,22,14628,ENSMUSG00000038280,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16616,cg09975195,-0.00000346,0.00000236,-1.467505779,0.143252329,loss,ns,-0.00000469,0.00000401,-1.170115322,0.242853347,neg,ns,0.000277872,0.001173493,0.236790197,0.81297595,pos,ns,0.089922302,-0.0000421,0.0000404,-1.04213658,0.298160397,neg,ns,0.94219863,Btbd11,Btbd11_Exon,10,85629267,85629316,85629267,85629268,50,+,CGGCTCTGACTTTTGCTGTGTTGCATGGACATATTCCTGTAGTTCAGGTA,"Exon (Btbd11-203/Btbd11, exon 7 of 17)",10,85386814,85660292,273479,1,Btbd11-203,242453,Btbd11-203;Btbd11-201;Btbd11-202;Btbd11-206,Btbd11;Btbd11;Btbd11;Btbd11,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,13,13,74007,ENSMUSG00000020042,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22672,cg02990638,-0.00000771,0.00000512,-1.507427097,0.132719591,loss,ns,-0.0000102,0.00000869,-1.169943285,0.242922473,neg,ns,0.001667212,0.002546075,0.654816249,0.513071626,pos,ns,0.289822002,-0.000123339,0.0000876,-1.40862792,0.159947392,neg,ns,0.885241729,BC052040,BC052040_Intron,2,115659241,115659290,115659241,115659242,50,+,CGGTAGTGCTGTATAGATCTGTAGAAAGGTTTTTCAGATGTACCAATCTC,"Intron (BC052040-203/BC052040, intron 5 of 10)",2,115581716,115778768,197053,1,BC052040-203,77525,BC052040-203;BC052040-201,BC052040;BC052040,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,37,49,399568,ENSMUSG00000040282,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26821,cg04625646,0.00000501,0.00000184,2.715137711,0.006996121,gain,ns,-0.00000366,0.00000313,-1.169626366,0.243049851,neg,ns,0.001380241,0.00091773,1.503973031,0.133606396,pos,ns,0.87417275,-0.0000716,0.0000316,-2.268181602,0.024005803,neg,ns,0.07569042,Id1,Id1_Intergenic_downstream,2,152739419,152739468,152739467,152739468,50,-,TGGGCCCGAGGAATGCGGAGCTATTTAACCTGAGCATCCCCAGGTGTACG,Downstream (2-3kb),2,152736251,152737410,1160,1,Id1-201,3217,Id1-201;Id1-202,Id1;Id1,3168;3168,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,5,5,15901,ENSMUSG00000042745,mapped to different genes,2,152739337,152739589,253,*,253,25,0.707509881,0.795197385,0.098814229,3.23E-19,CpGisland,TRUE,U6,En-Sp
5251,cg05926917,-0.0000146,0.0000132,-1.113122438,0.266518226,loss,ns,0.0000261,0.0000223,1.169545806,0.243082237,pos,ns,-0.008616128,0.006545411,-1.31636165,0.189025129,neg,ns,0.723480458,0.0004152,0.000225096,1.844543311,0.066057903,pos,ns,0.718544918,Tlx3,Tlx3_Intergenic_downstream,11,33192532,33192581,33192532,33192533,50,+,CGGGGGGAAAAGGAAATTTGGTAAAACATGAATTATAAGCTTCATTTAAA,Distal Intergenic,11,33200752,33203589,2838,2,Tlx3-201,11008,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,20,27140,ENSMUSG00000040610,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
12713,cg00259935,-0.0000193,0.00000725,-2.667802048,0.00803625,loss,ns,-0.0000144,0.0000123,-1.169447223,0.243121873,neg,ns,-0.006687177,0.00360827,-1.853291636,0.064790594,neg,ns,1.18848804,-0.0000642,0.000124088,-0.517687597,0.605045476,neg,ns,0.861144754,Gm43516,Gm43516_Intergenic_upstream,3,66935635,66935684,66935635,66935636,50,+,CGTCTGGACATGGGTAACAAGCCAAAGTGTTGAGTCCCTGATAATCTTTC,Distal Intergenic,3,66953541,66953862,322,1,Gm43516-201,-17857,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,11,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3545,cg13544184,-0.00000783,0.00000227,-3.455608411,0.00062562,loss,ns,0.0000045,0.00000385,1.169436433,0.243126212,pos,ns,0.001500178,0.001127894,1.330069838,0.184472984,pos,ns,0.734067227,-0.00000169,0.0000388,-0.043628089,0.965228949,neg,ns,0.063733292,Fam122a,Fam122a_Exon,19,24477230,24477279,24477278,24477279,50,-,CACTGAGGCCGTGGATCAGGGGGGCGCTGTTAGACCTCCTGAGGCCCCCG,Promoter (<=1kb),19,24476502,24477356,855,2,Fam122a-201,77,Fam122a-201;Pip5k1b-202;Pip5k1b-201;Pip5k1b-205;Pip5k1b-204,Fam122a;Pip5k1b;Pip5k1b;Pip5k1b;Pip5k1b,0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,68034,ENSMUSG00000074922,conserved gene and region,19,24477115,24477318,204,*,204,31,0.769607843,1.028292683,0.151960784,3.07E-30,CpGisland,TRUE,U1,Pr-A
2378,cg24002939,0.0000275,0.00000503,5.474413577,9.08E-08,gain,yes,0.00001,0.00000855,1.169316007,0.243174637,pos,ns,0.004810963,0.002504553,1.920886836,0.055662957,pos,ns,1.254433729,-0.0000736,0.0000861,-0.854497937,0.393489013,neg,ns,0.073988356,Tfap2b,Tfap2b_Intron,1,19217460,19217509,19217460,19217461,50,-,CGTGAATATCCTGTACAAAAACCCAGCAGGCGGCCGTAATTAGATAGAAA,"Intron (Tfap2b-201/Tfap2b, intron 2 of 6)",1,19208914,19238576,29663,1,Tfap2b-201,8546,Tfap2b-201;Tfap2b-204;Tfap2b-202;Tfap2b-205;Tfap2b-203,Tfap2b;Tfap2b;Tfap2b;Tfap2b;Tfap2b,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,40,21419,ENSMUSG00000025927,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
11488,cg06867259,0.00000261,0.00000161,1.625450354,0.105082795,gain,ns,-0.00000319,0.00000273,-1.169303872,0.243179517,neg,ns,0.000539749,0.000799489,0.675117527,0.500104325,pos,ns,0.300939389,-0.000039,0.0000275,-1.418420388,0.157072578,neg,ns,0.96265125,Fam126b,Fam126b_threeUTR,1,58534603,58534652,58534603,58534604,50,+,CGGGGAGCCAGGAATACTCGAGTCAGCCTCGTTTGAGAAGTCAAAGCCAT,3' UTR,1,58522806,58586323,63518,2,Fam126b-207,51671,Fam126b-207;Fam126b-202;Fam126b-208;Fam126b-201,Fam126b;Fam126b;Fam126b;Fam126b,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,3,213056,ENSMUSG00000038174,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4779,cg05462592,0.0000173,0.00000546,3.164448901,0.001707981,gain,ns,-0.0000108,0.00000927,-1.169290854,0.243184752,neg,ns,0.004577123,0.002715293,1.685682563,0.092863174,pos,ns,1.032156475,0.0000802,0.0000934,0.859122047,0.390937018,pos,ns,0.117013837,Mecom,Mecom_Intron,3,30514094,30514143,30514094,30514095,50,-,CGAGCCCGCGTGACCTTTCAGGGAGGTAATCAATCAAGTGATCAACAGGG,"Intron (Mecom-208/Mecom, intron 2 of 8)",3,29977344,30548008,570665,2,Mecom-208,33865,Mecom-212;Mecom-213;Mecom-207;Mecom-208;Mecom-211;Mecom-209,Mecom;Mecom;Mecom;Mecom;Mecom;Mecom,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,80,14013,ENSMUSG00000027684,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13831,cg15147429,0.00007,0.00000508,13.76793486,5.55E-34,gain,yes,-0.0000101,0.00000863,-1.169003827,0.243300201,neg,ns,0.005056279,0.002529176,1.999180096,0.046461507,pos,ns,1.332906708,0.0000422,0.000087,0.48569344,0.627527638,pos,ns,0.08577074,Six1,Six1_Intron,12,73050245,73050294,73050293,73050294,50,+,AAATAGATCACGTTTCGTTATCTTTAGTGGGAATCTGCAACGTGACACCG,"Intron (Six1-203/Six1, intron 1 of 1)",12,73043531,73053887,10357,2,Six1-203,3593,Six1-201;Six1-203;Six1-202,Six1;Six1;Six1,0;0;-4954,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,18,20471,ENSMUSG00000051367,conserved gene and region,12,73050255,73050304,50,*,50,8,0.56,2.040816327,0.16,4.61E-08,CpGisland,TRUE,U13,Hc-P
20180,cg24689680,-0.00000889,0.00000296,-3.000474103,0.002914355,loss,ns,-0.00000588,0.00000503,-1.168993539,0.24330434,neg,ns,-0.002014937,0.00147401,-1.366976692,0.172623069,neg,ns,0.762901167,-0.0000737,0.0000507,-1.454509643,0.146816805,neg,ns,0.918784762,Eftud2,Eftud2_Exon,11,102851756,102851805,102851804,102851805,50,-,CCTGTGAACTCGCCAAAGAACTTTTTGCAGACCAGCCTGAGCAAGGGGCG,"Exon (Eftud2-201/Eftud2, exon 14 of 28)",11,102838473,102880967,42495,2,Eftud2-201,29162,Eftud2-201;Eftud2-202;Eftud2-212;Eftud2-207;Eftud2-204,Eftud2;Eftud2;Eftud2;Eftud2;Eftud2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,20624,ENSMUSG00000020929,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25737,cg20476786,-0.00000134,0.00000125,-1.072392223,0.284378013,loss,ns,0.00000248,0.00000212,1.168864627,0.243356205,pos,ns,0.001210723,0.000621162,1.949127651,0.052181862,pos,ns,1.282480431,-0.0000252,0.0000214,-1.18084202,0.238570679,neg,ns,0.035790758,Otud3,Otud3_Exon,4,138913602,138913651,138913602,138913603,50,+,CGCCTCACCCGTCCCCCGGCACCTCCCGCAGCTTCAGCCCCAGGGCCTGC,Promoter (<=1kb),4,138895379,138913945,18567,2,Otud3-201,294,Otud3-201,Otud3,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,73162,ENSMUSG00000041161,conserved gene but different region,4,138913126,138914024,899,*,899,92,0.685205784,0.899508418,0.102335929,8.78E-71,CpGisland,TRUE,U1,Pr-A
10117,cg14647057,0.000206308,0.0000201,10.25650126,1.91E-21,gain,yes,-0.0000399,0.0000342,-1.168793983,0.24338463,neg,ns,0.040716384,0.010011381,4.06700982,0.0000604,pos,ns,4.218610682,-0.001081342,0.000344291,-3.140782683,0.00184749,neg,ns,0.248265904,Gm28308,Gm28308_Intron,6,52194851,52194900,52194851,52194852,50,-,CGACATTTTCATATTTGTTAGACGCACTGACCTGAAGTTCACCTCGGCCT,"Intron (Hoxaas3-202/Hoxaas3-202, intron 1 of 2)",6,52163359,52213339,49981,2,Gm28308-201,18439,Gm28308-201;Hoxa3-201;Hoxa3-203;Hoxa4-201,Gm28308;Hoxa3;Hoxa3;Hoxa4,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,46,103,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
11435,cg10986567,-0.00000225,0.00000242,-0.92752854,0.354373761,loss,ns,0.00000481,0.00000412,1.168657481,0.243439561,pos,ns,0.000531962,0.001205842,0.441154163,0.659408912,pos,ns,0.180845187,-0.0000213,0.0000415,-0.513093124,0.608251626,neg,ns,0.048616352,Hnrnpa0,Hnrnpa0_threeUTR,13,58127177,58127226,58127177,58127178,50,-,CGACCAAGGTCCAAGTAATAATAAAAAAATAGAGTCCATCAATGACTGTA,3' UTR,13,58125879,58128556,2678,2,Hnrnpa0-201,1330,Hnrnpa0-201,Hnrnpa0,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,77134,ENSMUSG00000007836,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26149,cg01393939,-0.00000631,0.00000265,-2.383196381,0.017765102,loss,ns,0.00000525,0.0000045,1.168533989,0.243489265,pos,ns,-0.00063338,0.001316934,-0.480950467,0.630890973,neg,ns,0.200045687,0.0000978,0.0000453,2.160517861,0.031498502,pos,ns,0.932162432,Lmo4,Lmo4_Intron,3,144196073,144196122,144196121,144196122,50,+,AAGATGGCTTTTAATAGGAAGCCCGAGAAACAAATTTTGCAGCAGCATCG,"Intron (Lmo4-203/Lmo4, intron 2 of 4)",3,144188530,144202396,13867,2,Lmo4-203,6274,Lmo4-203;Lmo4-201;Lmo4-202;Lmo4-207;Lmo4-206;Lmo4-208;Lmo4-205,Lmo4;Lmo4;Lmo4;Lmo4;Lmo4;Lmo4;Lmo4,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,54,16911,ENSMUSG00000028266,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19037,cg24189185,-0.0000146,0.00000599,-2.439917495,0.015250738,loss,ns,0.0000119,0.0000102,1.168394326,0.243545485,pos,ns,0.002002915,0.002983157,0.671407826,0.502460753,pos,ns,0.298897855,0.0000156,0.000102591,0.151971174,0.879308527,pos,ns,0.914781915,Fgf5,Fgf5_Exon,5,98262015,98262064,98262015,98262016,50,+,CGATGTCAAAAAAAGGAAAACTCCATGCAAGTGTAAGTAGAACCACTTTA,"Exon (Fgf5-201/Fgf5, exon 2 of 3)",5,98254184,98277030,22847,1,Fgf5-201,7831,Fgf5-201;Fgf5-202,Fgf5;Fgf5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,14176,ENSMUSG00000029337,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19156,cg17279431,-0.0000113,0.00000539,-2.091840739,0.037266138,loss,ns,0.0000107,0.00000915,1.168182246,0.243630874,pos,ns,-0.003055142,0.002681934,-1.139156503,0.255517371,neg,ns,0.592579569,0.0000556,0.0000922,0.602987171,0.546958101,pos,ns,0.791686742,Mrps22,Mrps22_Intergenic_upstream,9,98708012,98708061,98708012,98708013,50,+,CGTTTGCGGTTTCTCTGGGACTTTATTAAAATGTTTGTGACGGAGCCAAT,Distal Intergenic,9,98588730,98601660,12931,2,Mrps22-201,-106352,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,6,64655,ENSMUSG00000032459,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14691,cg18149227,-0.00000369,0.000012,-0.306436552,0.759477993,loss,ns,-0.0000239,0.0000205,-1.168051949,0.243683346,neg,ns,-0.00997849,0.005995769,-1.664255298,0.097071838,neg,ns,1.012906748,0.0000488,0.000206194,0.236652488,0.813082694,pos,ns,0.684005773,2210408I21Rik,2210408I21Rik_Intron,13,77249139,77249188,77249139,77249140,50,+,CGAAGGCTTCCACATTGGAAATTTGCAAGGTGGCCACCTGGGTTTCTCTT,"Intron (2210408I21Rik-201/2210408I21Rik, intron 5 of 19)",13,77135540,77613784,478245,1,2210408I21Rik-201,113599,2210408I21Rik-201;2210408I21Rik-203,2210408I21Rik;2210408I21Rik,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,19,20,72371,ENSMUSG00000071252,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21629,cg22719564,-0.00000281,0.00000254,-1.102942644,0.270907553,loss,ns,-0.00000505,0.00000432,-1.167901787,0.243743827,neg,ns,-0.002542223,0.00126633,-2.007551369,0.045558543,neg,ns,1.341430172,0.0000524,0.0000435,1.203713667,0.229618621,pos,ns,0.938205852,Evl,Evl_Exon,12,108658652,108658701,108658700,108658701,50,+,TGATTGAGGGACATGGTTAATGGAATTGTCTCACACAGAAATCGCACCCG,"Exon (Mir342-201/Mir342-201, exon 1 of 1)",12,108554720,108688516,133797,1,Evl-202,103932,Evl-202;Evl-201;Evl-203;Evl-206;Evl-204,Evl;Evl;Evl;Evl;Evl,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,14026,ENSMUSG00000021262,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13373,cg27589485,-0.000109676,0.0000137,-8.013971675,2.28E-14,loss,yes,0.0000272,0.0000232,1.167814466,0.243779002,pos,ns,-0.008967667,0.006811449,-1.316557742,0.18895943,neg,ns,0.72363143,0.000127836,0.000234245,0.545736182,0.585639778,pos,ns,0.806129283,Nr2f2,Nr2f2_Intergenic_downstream,7,70348964,70349013,70348964,70348965,50,-,CGAAAGCAGATGTGTTTGCTTAGCTAATCACAAGCATGTTTCTTTCAAGG,Distal Intergenic,7,70353074,70355237,2164,2,Nr2f2-203,6273,Nr2f2-201;Nr2f2-203,Nr2f2;Nr2f2,0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,19,69,11819,ENSMUSG00000030551,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8240,cg23123390,-0.0000642,0.0000123,-5.219507895,0.000000329,loss,yes,0.0000244,0.0000209,1.167778314,0.243793566,pos,ns,0.00516005,0.006126327,0.842274739,0.400283516,pos,ns,0.397632294,-0.000546008,0.000210684,-2.591600397,0.01000515,neg,ns,0.686004661,Slf2,Slf2_Intergenic_upstream,19,44896456,44896505,44896504,44896505,50,-,GTTCCTGTCTCATAAGCTTATTGCAAAACCAGTAAAAATGATCTATTCCG,Distal Intergenic,19,44931151,44983188,52038,1,Slf2-201,-34695,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,15,17,226151,ENSMUSG00000036097,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10945,cg20010554,-0.000013,0.00000649,-1.996668316,0.046735374,loss,ns,0.0000129,0.000011,1.167758925,0.243801378,pos,ns,0.017760747,0.003228885,5.500581389,7.93E-08,pos,ns,7.100762147,-0.000493488,0.000111041,-4.444193005,0.0000123,neg,ns,0.907029022,Tcf7l2,Tcf7l2_Intron,19,55894736,55894785,55894784,55894785,50,-,GTCAGCACATTCTTGATTTTGTTTAATCTTTTTGATCTTTTCAATTATCG,"Intron (Tcf7l2-213/Tcf7l2, intron 4 of 13)",19,55741820,55933229,191410,1,Tcf7l2-213,152916,Tcf7l2-213;Tcf7l2-201;Tcf7l2-208;Tcf7l2-211;Tcf7l2-212;Tcf7l2-206;Tcf7l2-204;Tcf7l2-205;Tcf7l2-222;Tcf7l2-215;Tcf7l2-214;Tcf7l2-207;Tcf7l2-202;Tcf7l2-209;Tcf7l2-210;Tcf7l2-217;Tcf7l2-220;Tcf7l2-218;Tcf7l2-203;Tcf7l2-216;Tcf7l2-219;Tcf7l2-221,Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,55,88,21416,ENSMUSG00000024985,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4768,cg10302301,0.0000039,0.00000211,1.852168141,0.06495221,gain,ns,-0.00000418,0.00000358,-1.16765305,0.243844035,neg,ns,-0.003148768,0.001048829,-3.002175811,0.002898576,neg,ns,2.537815318,0.0000796,0.0000361,2.20679476,0.028061101,pos,ns,0.039572037,Mecom,Mecom_fiveUTR,3,30509731,30509780,30509731,30509732,50,+,CGCGCTAGACGCCCCTCCAACATCTCAGCGCCGCCAAAAAAAGTTTGGAG,Promoter (<=1kb),3,29951299,30509733,558435,2,Mecom-212,0,Mecom-212;Mecom-213;Mecom-207;Mecom-208;Mecom-211;Mecom-209,Mecom;Mecom;Mecom;Mecom;Mecom;Mecom,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,13,80,14013,ENSMUSG00000027684,conserved gene and region,3,30509690,30509782,93,*,93,8,0.537634409,1.24,0.086021505,0.00000681,CpGisland,TRUE,U3,Pr-B
5880,cg05837918,-0.00000124,0.0000032,-0.386541185,0.699361091,loss,ns,-0.00000635,0.00000544,-1.167427995,0.243934727,neg,ns,0.000341598,0.001592831,0.214459503,0.830329746,pos,ns,0.080749404,-0.0000932,0.0000548,-1.701464065,0.089858547,neg,ns,0.882529035,Bag6,Bag6_Exon,17,35142547,35142596,35142547,35142548,50,+,CGTCGCCCACCAGATCACTCATCAGGCCATGGTGGCAGCTGTTGCCTCCG,"Exon (Bag6-210/Bag6, exon 12 of 12)",17,35135178,35147305,12128,1,Bag6-202,7369,Bag6-202;Bag6-201;Bag6-203;Bag6-209;Bag6-210;Bag6-212;Bag6-214;Bag6-213;Bag6-211;Bag6-205;Bag6-206;Bag6-208;Bag6-216;Bag6-215;Bag6-207;Bag6-204,Bag6;Bag6;Bag6;Bag6;Bag6;Bag6;Bag6;Bag6;Bag6;Bag6;Bag6;Bag6;Bag6;Bag6;Bag6;Bag6,0;0;0;7319;0;7037;6829;0;0;6424;3974;2316;1388;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,224727,ENSMUSG00000024392,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13142,cg04760895,0.0000031,0.00000395,0.78501627,0.433043541,gain,ns,0.00000784,0.00000671,1.167315851,0.243979927,pos,ns,0.007441161,0.001967129,3.782751127,0.000186115,pos,ns,3.730219321,-0.00027204,0.0000676,-4.021317264,0.0000727,neg,ns,0.883800613,Efnb3,Efnb3_Exon,11,69556119,69556168,69556119,69556120,50,+,CGCCGTCTCCGCCAACACATGGCACCCCCAGCCCCTGCCACGCCCAGCAA,"Exon (Efnb3-201/Efnb3, exon 5 of 5)",11,69554092,69560205,6114,2,Efnb3-201,4037,Efnb3-201,Efnb3,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,6,13643,ENSMUSG00000003934,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23775,cg10206828,0.0000133,0.0000196,0.678596392,0.49789989,gain,ns,-0.0000388,0.0000332,-1.167286374,0.243991809,neg,ns,-0.018595568,0.009735625,-1.910053846,0.057048907,neg,ns,1.243752671,0.00067293,0.000334807,2.009902135,0.045307667,pos,ns,0.425344592,Foxo6,Foxo6_Intergenic_upstream,4,120332876,120332925,120332924,120332925,50,+,CAGAAACAGAGCAGCTGTTAGTCTGAATAGACACTGCACAACGGCAGACG,Distal Intergenic,4,120267079,120287349,20271,2,Foxo6-201,-45527,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,9,42,329934,ENSMUSG00000052135,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24525,cg03064169,-0.0000718,0.00000672,-10.68272746,6.88E-23,loss,yes,0.0000133,0.0000114,1.167270125,0.24399836,pos,ns,0.007787437,0.003345404,2.327801288,0.020565992,pos,ns,1.686850347,-0.000485531,0.000115048,-4.220238674,0.0000321,neg,ns,0.678455345,Ypel3,Ypel3_Exon,7,126777843,126777892,126777891,126777892,50,+,CGGATTTCAAAGCCCAAGACGTTTCAGGCCTACTTGGATGATTGTCACCG,Promoter (<=1kb),7,126776955,126780514,3560,1,Ypel3-201,888,Gdpd3-201;Gdpd3-203;Tbx6-202;Tbx6-201;Ypel3-201;Ypel3-210;Ypel3-204;Ypel3-209;Ypel3-211;Ypel3-203;Ypel3-207;Ypel3-205;Ypel3-202;Ypel3-208;Ypel3-206,Gdpd3;Gdpd3;Tbx6;Tbx6;Ypel3;Ypel3;Ypel3;Ypel3;Ypel3;Ypel3;Ypel3;Ypel3;Ypel3;Ypel3;Ypel3,11509;9323;-3591;-3591;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,4,66090,ENSMUSG00000042675,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U4,Pr-F
6662,cg15358562,-0.0000409,0.0000081,-5.046183244,0.000000769,loss,yes,-0.0000161,0.0000138,-1.167239405,0.244010743,neg,ns,-0.014640572,0.00403006,-3.632841776,0.000327954,neg,ns,3.484187307,0.000109737,0.000138593,0.79178837,0.429089519,pos,ns,0.804624027,Dennd1a,Dennd1a_Intron,2,37946113,37946162,37946161,37946162,50,-,AAAGAAATCCGTGTACAATATCTGTGAGCTCTGCCAGTTAATTGAATTCG,"Intron (Dennd1a-201/Dennd1a, intron 12 of 21)",2,37798991,38287375,488385,2,Dennd1a-201,341213,Dennd1a-201;Dennd1a-207;Dennd1a-210;Dennd1a-204,Dennd1a;Dennd1a;Dennd1a;Dennd1a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,46,227801,ENSMUSG00000035392,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6468,cg20677320,-0.00000117,0.00000179,-0.654103335,0.513530173,loss,ns,0.00000354,0.00000303,1.167222524,0.244017548,pos,ns,-0.000159937,0.000888914,-0.179923453,0.857330216,neg,ns,0.06685187,-0.0000203,0.0000306,-0.66523673,0.506393709,neg,ns,0.043026326,Zfp536,Zfp536_Intron,7,37374156,37374205,37374156,37374157,50,-,CGTAAATGTAAAATGGTGCCCATTCGAACTCAGTAATGAAGCATGGTGCA,"Intron (Zfp536-211/Zfp536, intron 3 of 3)",7,37318024,37568390,250367,2,Zfp536-211,194185,Zfp536-211,Zfp536,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,73,112,243937,ENSMUSG00000043456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1290,cg18687107,-0.00000302,0.00000194,-1.557369558,0.120403053,loss,ns,-0.00000385,0.0000033,-1.166930936,0.244135115,neg,ns,-0.000269214,0.00096607,-0.278669434,0.780684319,neg,ns,0.107524544,0.00000663,0.0000332,0.199694061,0.841850785,pos,ns,0.956240547,Mtmr12,Mtmr12_threeUTR,15,12257650,12257699,12257698,12257699,50,+,TGGAAGTGCCCTTTTGAAAATGTCAGCACTGCCCAAAGAACAGGATGACG,3' UTR,15,12205028,12274496,69469,1,Mtmr12-201,52622,Mtmr12-201;Mtmr12-202;Mtmr12-205;Mtmr12-204,Mtmr12;Mtmr12;Mtmr12;Mtmr12,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,1,268783,ENSMUSG00000039458,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16829,cg13445748,-0.0000184,0.00000768,-2.396593676,0.01714038,loss,ns,-0.0000152,0.000013,-1.166925595,0.244137269,neg,ns,0.005710296,0.003820046,1.494824006,0.135977604,pos,ns,0.866532616,-0.000170098,0.000131371,-1.294787968,0.196356922,neg,ns,0.945527322,Cltc,Cltc_Intron,11,86699900,86699949,86699948,86699949,50,+,TAAAACAATGCATAACACTGCAGTTCAATTACCTGTTTTTCACACACACG,"Intron (Cltc-202/Cltc, intron 30 of 31)",11,86694351,86757565,63215,2,Cltc-202,57616,Cltc-202;Cltc-201;Cltc-203;Cltc-205,Cltc;Cltc;Cltc;Cltc,0;0;0;2481,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,10,67300,ENSMUSG00000047126,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16900,cg22875689,-0.0000146,0.000004,-3.664672659,0.000291234,loss,ns,-0.00000792,0.00000679,-1.166874287,0.244157961,neg,ns,-0.001918897,0.001989584,-0.964471391,0.335561403,neg,ns,0.474227999,-0.000036,0.0000684,-0.526272563,0.599075151,neg,ns,0.962085193,1700113H08Rik,1700113H08Rik_Intron,10,87214263,87214312,87214263,87214264,50,+,CGCACCAACCAAAGACAACATATTGGGAAGAAAAATGCTTGTAAACTGCA,"Intron (1700113H08Rik-202/1700113H08Rik, intron 4 of 4)",10,87058045,87230589,172545,1,1700113H08Rik-202,156218,1700113H08Rik-202;1700113H08Rik-201;1700113H08Rik-203,1700113H08Rik;1700113H08Rik;1700113H08Rik,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,6,76640,ENSMUSG00000047129,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3701,cg07081929,-0.0000499,0.00000911,-5.476230944,8.99E-08,loss,yes,-0.0000181,0.0000155,-1.166771923,0.244199245,neg,ns,-0.015732478,0.004534256,-3.469692983,0.000594885,neg,ns,3.225566973,0.000282505,0.000155933,1.811712827,0.070998171,pos,ns,0.794551769,Pou2f2,Pou2f2_threeUTR,7,25088130,25088179,25088130,25088131,50,-,CGCCTTTGTCATCGTCGTCTTGCTTTGGAGACTGCTGAGGTCAAAGTTTA,3' UTR,7,25087344,25132488,45145,2,Pou2f2-203,44309,Pou2f2-203;Pou2f2-209;Pou2f2-201;Pou2f2-206;Pou2f2-204;Pou2f2-205;Pou2f2-202;Zfp574-202,Pou2f2;Pou2f2;Pou2f2;Pou2f2;Pou2f2;Pou2f2;Pou2f2;Zfp574,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,29,18987,ENSMUSG00000008496,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18416,cg05297331,-0.0000694,0.0000125,-5.570170662,5.53E-08,loss,yes,0.0000247,0.0000212,1.166582144,0.244275799,pos,ns,-0.016232257,0.006204847,-2.61606076,0.00933056,neg,ns,2.030092283,0.000250407,0.000213384,1.173503126,0.241494927,pos,ns,0.637114543,Erg,Erg_Intron,16,95439363,95439412,95439363,95439364,50,-,CGGAAATGAGATTAGTCTTGTAACGAGTGTTCAGCCCTGATAACCCATCT,"Intron (Erg-208/Erg, intron 2 of 10)",16,95359169,95530365,171197,2,Erg-208,90953,Erg-208;Erg-207;Erg-201;Erg-206;Erg-203;Erg-204;Erg-202;Erg-205,Erg;Erg;Erg;Erg;Erg;Erg;Erg;Erg,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,5,13876,ENSMUSG00000040732,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
7459,cg03535689,-0.00000244,0.00000574,-0.424175189,0.671732255,loss,ns,0.0000114,0.00000975,1.16654549,0.244290587,pos,ns,-0.006153354,0.002857555,-2.153363115,0.032061108,neg,ns,1.494021473,0.000194875,0.0000983,1.983034399,0.048245846,pos,ns,0.105667554,Pou3f3,Pou3f3_fiveUTR,1,42696298,42696347,42696298,42696299,50,-,CGGCAATAGCAACTTCAGAGAAATGCACCATCGCAAGAAGTTTTCCTAGG,5' UTR,1,42694925,42703176,8252,1,Pou3f3-202,1373,Pou3f3-202;Pou3f3-201,Pou3f3;Pou3f3,0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,37,18993,ENSMUSG00000045515,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20917,cg22942788,0.000115054,0.0000101,11.41281341,2.02E-25,gain,yes,-0.00002,0.0000171,-1.166475386,0.244318871,neg,ns,0.005065217,0.005017495,1.009511039,0.313516909,pos,ns,0.503739031,0.000239157,0.000172551,1.38600723,0.16674086,pos,ns,0.353529764,Pax6,Pax6_Intron,2,105690001,105690050,105690049,105690050,50,-,CTTCACTGAAAAGTCTGTTGACTGGGCTTCTTGTAACACAATGTGGCCCG,"Intron (Pax6-206/Pax6, intron 7 of 12)",2,105668900,105697364,28465,1,Pax6-206,21101,Pax6-206;Pax6-207;Pax6-210;Pax6-208;Pax6-202;Pax6-205;Pax6-225;Pax6-204;Pax6-201;Pax6-203;Pax6-224;Pax6-219;Pax6-213;Pax6-211;Pax6-222;Pax6-212;Pax6-215;Pax6-223;Pax6-216;Pax6-218,Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;-2433,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,78,18508,ENSMUSG00000027168,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
15106,cg25913181,-0.00000511,0.00000216,-2.361250154,0.018831839,loss,ns,0.00000429,0.00000368,1.166289197,0.244394003,pos,ns,-0.001490602,0.001076979,-1.384058437,0.167336169,neg,ns,0.776410178,0.0000276,0.000037,0.744065042,0.457400737,pos,ns,0.96586509,Zfp827,Zfp827_threeUTR,8,79189695,79189744,79189695,79189696,50,+,CGCCCCGCTGCCATGGAGTGCCACCTCAAGACCCACTACAAGATGGAGTA,3' UTR,8,79028437,79193743,165307,1,Zfp827-202,161258,Zfp827-202;Zfp827-203;Zfp827-209;Zfp827-206;Zfp827-205;Zfp827-207;Zfp827-204,Zfp827;Zfp827;Zfp827;Zfp827;Zfp827;Zfp827;Zfp827,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,12,28,622675,ENSMUSG00000071064,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20104,cg08480303,0.00000449,0.00000441,1.01640191,0.310230636,gain,ns,-0.00000875,0.0000075,-1.166220771,0.244421618,neg,ns,-0.003081461,0.002197045,-1.402547839,0.161752357,neg,ns,0.791149383,0.0000389,0.0000756,0.515265981,0.606734398,pos,ns,0.910864896,Atf7,Atf7_fiveUTR,15,102593654,102593703,102593702,102593703,50,+,AGTATATTGTAAACGTACCTGTCCACAGCCCGGGGCATTGCACACAAACG,5' UTR,15,102525946,102625073,99128,2,Atf7-211,31370,Atf7-211;Atf7-210;Atf7-209;Atf7-202;Atf7-203;Atf7-205;Atf7-204;Atf7-206;Atf7-208;Atf7-213;Atf7-212;Atf7-207;Gm28047-201,Atf7;Atf7;Atf7;Atf7;Atf7;Atf7;Atf7;Atf7;Atf7;Atf7;Atf7;Atf7;Gm28047,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,11,223922,ENSMUSG00000099083,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21836,cg16596397,0.00000542,0.00000811,0.668345552,0.504410367,gain,ns,0.0000161,0.0000138,1.166186131,0.244435599,pos,ns,-0.006578038,0.004035964,-1.629855663,0.104147637,neg,ns,0.982350579,0.000274002,0.000138796,1.974128758,0.049254569,pos,ns,0.811897288,Lmo1,Lmo1_Intergenic_upstream,7,109232044,109232093,109232044,109232045,50,-,CGTAAATTATGAAGGATTAGCATTTATGAATTTTAAATCAGGGCTGGGGT,Distal Intergenic,7,109138675,109175207,36533,2,Lmo1-202,-56886,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,34,66,109594,ENSMUSG00000036111,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
218,cg15911330,4.51E-08,0.000000625,0.07219149,0.942496071,gain,ns,0.00000124,0.00000106,1.166174832,0.244440159,pos,ns,0.0000736,0.000310887,0.236806085,0.812963634,pos,ns,0.089928881,-0.00000351,0.0000107,-0.328482442,0.742768691,neg,ns,0.9844565,Gm21992,Gm21992_Exon,19,4788009,4788058,4788009,4788010,50,-,CGGCTGGTGGACAACTGCACGTGCATTCGTTTGCCTTGAAGAAACAGACG,"Exon (Rbm4-206/Rbm4, exon 3 of 4)",19,4742913,4811612,68700,2,Gm21992-203,23554,Gm21992-203;Gm21992-206;Gm21992-204;Gm21992-201;Gm21992-205;Gm21992-202;Rbm4-206;Rbm4-203;Rbm4-207;Rbm4-201;Rbm4-204;Rbm4-202;Rbm4-205,Gm21992;Gm21992;Gm21992;Gm21992;Gm21992;Gm21992;Rbm4;Rbm4;Rbm4;Rbm4;Rbm4;Rbm4;Rbm4,0;0;0;0;0;0;0;0;0;0;0;0;5825,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,27,48,102902673,ENSMUSG00000096370,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26798,cg04487260,0.0000528,0.0000035,15.10254657,5.24E-39,gain,yes,-0.00000693,0.00000594,-1.166160586,0.24444591,neg,ns,0.002134587,0.001741427,1.225768609,0.221216143,pos,ns,0.655183185,0.000019,0.0000599,0.316830251,0.751585665,pos,ns,0.096669597,Sox12,Sox12_threeUTR,2,152396652,152396701,152396652,152396653,50,+,CGGGAGATGGGGTGCCAGCCTCGGCCTCCGAGGGGCCCCAATACCTGATT,3' UTR,2,152393611,152398063,4453,2,Sox12-202,1362,Sox12-202;Sox12-201,Sox12;Sox12,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,7,7,20667,ENSMUSG00000051817,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
21126,cg26375445,0.0000139,0.00000436,3.187791845,0.001579973,gain,ns,-0.00000863,0.0000074,-1.165971457,0.244522256,neg,ns,0.000440603,0.002167719,0.203256357,0.839068015,pos,ns,0.076202834,-0.00000686,0.0000745,-0.092023395,0.92673889,neg,ns,0.0727048,Gm3191,Gm3191_Intergenic_downstream,12,106479884,106479933,106479932,106479933,50,+,CAAATGTGGCTGAAATTGATAATTCCAAAGTGCTTCATTTCGGCTCCTCG,Distal Intergenic,12,106459150,106459495,346,1,Gm3191-201,20734,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,11,13,100041191,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
9955,cg19829679,-0.0000138,0.00000477,-2.882013687,0.004227319,loss,ns,-0.00000945,0.00000811,-1.165788381,0.244596174,neg,ns,-0.005242264,0.002375246,-2.20703997,0.028043789,neg,ns,1.552163314,0.000043,0.0000817,0.526482556,0.59892945,pos,ns,0.910073638,Maml3,Maml3_Intron,3,51749547,51749596,51749547,51749548,50,-,CGTCTGATTGGATGCACATTCATCTTCAAGTTATGTTGTGTGACAGCCCG,"Intron (Maml3-201/Maml3, intron 1 of 3)",3,51685907,51796536,110630,2,Maml3-201,46940,Maml3-201;Maml3-202,Maml3;Maml3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,32,433586,ENSMUSG00000061143,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2713,cg26088654,-0.00000681,0.00000264,-2.575380212,0.010476231,loss,ns,0.00000523,0.00000449,1.165702673,0.244630785,pos,ns,-0.000799493,0.001315376,-0.607805317,0.543761602,neg,ns,0.264591463,0.0000352,0.0000452,0.778755739,0.436717646,pos,ns,0.044933973,Kat6b,Kat6b_fiveUTR,14,21500916,21500965,21500964,21500965,50,+,CAACAACAGGGGGACACAAAATGGCGGCGGCTTAGCTCCTACCCCTGGCG,5' UTR,14,21481434,21517111,35678,1,Kat6b-209,19482,Kat6b-209;Kat6b-211;Kat6b-206;Kat6b-204;Kat6b-201;Kat6b-207;Kat6b-202;Kat6b-208;Kat6b-212;Kat6b-210,Kat6b;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,7,21,54169,ENSMUSG00000021767,conserved gene and region,14,21500899,21501345,447,*,447,45,0.727069351,0.780983072,0.100671141,1.37E-34,CpGisland,TRUE,U1,Pr-A
524,cg06186752,0.0000125,0.0000134,0.927556689,0.354359177,gain,ns,0.0000266,0.0000228,1.165676826,0.244641223,pos,ns,0.016138545,0.006690209,2.412263306,0.016434336,pos,ns,1.784247827,-0.000200231,0.000230076,-0.870284102,0.384818555,neg,ns,0.865521446,St18,St18_Intron,1,6767859,6767908,6767859,6767860,50,-,CGAATGGCAGTAAAAGTGTGGCACATAAAAGGTTTATTAAAGGAAATTAA,"Intron (St18-208/St18, intron 4 of 23)",1,6487231,6860934,373704,1,St18-208,280628,St18-208;St18-204;St18-201;St18-206;St18-203;St18-210;St18-212;St18-207;St18-213,St18;St18;St18;St18;St18;St18;St18;St18;St18,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,20,240690,ENSMUSG00000033740,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19443,cg06431050,0.0000132,0.00000495,2.670991009,0.007962034,gain,ns,-0.0000098,0.0000084,-1.165633177,0.244658851,neg,ns,0.016711124,0.00246231,6.78676595,5.83E-11,pos,yes,10.23397296,-0.00028703,0.0000847,-3.389634251,0.000790379,neg,ns,0.801919441,Prpf40b,Prpf40b_Exon,15,99315215,99315264,99315263,99315264,50,-,TCAGCCTTTGAGCAGATCACCCTGGAGTCGGAGCGGATCCGGCTCTTCCG,"Exon (Prpf40b-214/Prpf40b, exon 19 of 24)",15,99295239,99317018,21780,1,Prpf40b-214,19976,Fmnl3-201;Fmnl3-203;Fmnl3-202;Prpf40b-214;Prpf40b-206;Prpf40b-209;Prpf40b-212;Prpf40b-208;Prpf40b-201;Prpf40b-202;Prpf40b-210;Prpf40b-215;Prpf40b-203;Prpf40b-207;Prpf40b-213;Prpf40b-204,Fmnl3;Fmnl3;Fmnl3;Prpf40b;Prpf40b;Prpf40b;Prpf40b;Prpf40b;Prpf40b;Prpf40b;Prpf40b;Prpf40b;Prpf40b;Prpf40b;Prpf40b;Prpf40b,55185;55185;55218;0;0;0;0;0;0;0;0;0;0;0;0;-276,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,Exon,7,10,54614,ENSMUSG00000023007,conserved gene but different region,15,99315183,99315264,82,*,82,8,0.609756098,1.051282051,0.097560976,0.00000265,CpGisland,TRUE,NA,NRS
25565,cg21609270,0.0000131,0.00000543,2.418246022,0.016171615,gain,ns,-0.0000107,0.00000922,-1.165540941,0.244696105,neg,ns,0.000939783,0.002700851,0.347958325,0.728107636,pos,ns,0.137804414,-0.000227099,0.0000929,-2.445031676,0.015040309,neg,ns,0.634046278,Ebf3,Ebf3_Intron,7,137237464,137237513,137237512,137237513,50,-,TCCACCCACCAATTTTTCCTAACAACCACTGTGCAATTAAACTCCACACG,"Intron (Gm10578-201/Gm10578-201, intron 1 of 2)",7,137193673,137314445,120773,2,Ebf3-204,76932,Ebf3-204;Ebf3-201;Ebf3-202;Ebf3-203;Ebf3-208;Ebf3-205,Ebf3;Ebf3;Ebf3;Ebf3;Ebf3;Ebf3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,62,84,13593,ENSMUSG00000010476,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27085,cg14762358,-0.00000308,0.00000512,-0.600928519,0.548326715,loss,ns,0.0000101,0.0000087,1.16541568,0.244746704,pos,ns,-0.000906765,0.002549465,-0.355668684,0.722330598,neg,ns,0.141263988,0.0000806,0.0000877,0.919043588,0.358787311,pos,ns,0.783956745,Vstm2l,Vstm2l_Intron,2,157917249,157917298,157917249,157917250,50,+,CGGCGAATAAGTGGGTCATGTCTAATAAGCTATTTGTGTTCAGGAGGAGA,"Intron (Vstm2l-201/Vstm2l, intron 1 of 3)",2,157914653,157944719,30067,1,Vstm2l-201,2596,Vstm2l-201,Vstm2l,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,5,277432,ENSMUSG00000037843,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
7179,cg09164670,-0.000000167,0.00000101,-0.165339732,0.868784356,loss,ns,-0.000002,0.00000172,-1.165374576,0.24476331,neg,ns,-0.000548763,0.00050358,-1.089723363,0.276681376,neg,ns,0.558020073,0.0000219,0.0000173,1.262529329,0.207707288,pos,ns,0.031706524,Jade1,Jade1_Intron,3,41564287,41564336,41564287,41564288,50,+,CGCGTCACCACATGTCCAAAATATTCATTGCATCAATTCAAGGGCAGTGA,"Intron (Jade1-201/Jade1, intron 1 of 10)",3,41555731,41616864,61134,1,Jade1-201,8556,Jade1-201;Jade1-210;Jade1-214;Jade1-202;Jade1-209;Jade1-204;Jade1-203;Jade1-211;Jade1-206,Jade1;Jade1;Jade1;Jade1;Jade1;Jade1;Jade1;Jade1;Jade1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,16,269424,ENSMUSG00000025764,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
15001,cg21419180,0.0000216,0.00000379,5.70393421,2.73E-08,gain,yes,-0.00000749,0.00000643,-1.165364551,0.24476736,neg,ns,0.004793179,0.001883988,2.544166397,0.011438894,pos,ns,1.94161596,-0.000128721,0.0000648,-1.986736786,0.047831645,neg,ns,0.056668377,Pou4f2,Pou4f2_Exon,8,78434750,78434799,78434798,78434799,50,+,GAATATTTCATTCTTTTCTGTTTCTGCCTCTGGTTGCAGAACCAGACGCG,"Exon (Pou4f2-201/Pou4f2, exon 2 of 2)",8,78433010,78436645,3636,2,Pou4f2-201,1846,Pou4f2-201,Pou4f2,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,23,18997,ENSMUSG00000031688,conserved gene and region,8,78434796,78435256,461,*,461,42,0.62472885,0.933738426,0.091106291,2.15E-30,CpGisland,TRUE,U13,Hc-P
19407,cg03266055,-0.0000431,0.0000151,-2.849801653,0.004667625,loss,ns,0.0000299,0.0000257,1.165330899,0.244780956,pos,ns,0.002240869,0.007519983,0.297988544,0.765911523,pos,ns,0.115821396,-0.000163428,0.000258612,-0.631942376,0.527890286,neg,ns,0.131869684,Dusp6,Dusp6_Promoter,10,99262921,99262970,99262921,99262922,50,+,CGCGAAGTGTGAACTCTCAACAGAAGGAAACATGAGACAACTGAAGTGCC,Promoter (<=1kb),10,99263231,99267488,4258,1,Dusp6-201,-261,Dusp6-201;Dusp6-204;Dusp6-202;Dusp6-203,Dusp6;Dusp6;Dusp6;Dusp6,0;0;0;-2671,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,6,8,67603,ENSMUSG00000019960,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
3915,cg19529849,0.000161907,0.0000114,14.21320372,1.20E-35,gain,yes,-0.0000226,0.0000194,-1.165257514,0.244810606,neg,ns,0.021109202,0.005669586,3.723235218,0.00023357,pos,ns,3.631582637,-0.000235907,0.000194977,-1.209924182,0.227229794,neg,ns,0.167867817,Celf4,Celf4_Exon,18,25753477,25753526,25753525,25753526,50,-,GGTCCTTCATGGGAATGGTCGACGGGTTCCCCGGGCTGTGGCTTAATCCG,Promoter (<=1kb),18,25477632,25753983,276352,2,Celf4-202,457,Celf4-202;Celf4-201;Celf4-203;Celf4-207;Celf4-206;Celf4-209;Celf4-205,Celf4;Celf4;Celf4;Celf4;Celf4;Celf4;Celf4,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,31,59,108013,ENSMUSG00000024268,conserved gene and region,18,25753376,25753608,233,*,233,18,0.592274678,0.882575758,0.077253219,5.03E-12,CpGisland,TRUE,U3,Pr-B
11185,cg15139258,-0.00000179,0.00000233,-0.770700597,0.441471393,loss,ns,0.0000046,0.00000395,1.165211955,0.244829014,pos,ns,0.002308205,0.001157569,1.994011039,0.04702659,pos,ns,1.327656514,-0.000100241,0.0000398,-2.518074901,0.012303309,neg,ns,0.943912747,Tmem245,Tmem245_Exon,4,56895262,56895311,56895262,56895263,50,-,CGTGACAACATGCAACTTAGTAATGTGCAATATCTCCACCAGAGCAAGCA,"Exon (Mir32-201/Mir32-201, exon 1 of 1)",4,56866923,56947437,80515,2,Tmem245-201,52126,Tmem245-201;Tmem245-204;Tmem245-203;Tmem245-202;Tmem245-205,Tmem245;Tmem245;Tmem245;Tmem245;Tmem245,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,242474,ENSMUSG00000055296,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17304,cg00423854,-0.0000111,0.00000362,-3.06389682,0.002376573,loss,ns,0.00000718,0.00000616,1.165186549,0.24483928,pos,ns,0.001094484,0.001804181,0.606637925,0.544535227,pos,ns,0.26397402,-0.0000857,0.000062,-1.38137997,0.168156992,neg,ns,0.914397556,Gm5356,Gm5356_Intergenic_upstream,8,89560560,89560609,89560560,89560561,50,+,CGAAGGCAATTGAGGGGTAAAATAATACTAATAATGATAACAATAATTAG,Distal Intergenic,8,89186946,89187560,615,2,Gm5356-201,-373000,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,23,23,384862,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12269,cg09537487,-0.0000475,0.0000122,-3.898484061,0.00011868,loss,ns,0.0000241,0.0000207,1.165071488,0.244885778,pos,ns,0.000158882,0.006066162,0.026191488,0.979121457,pos,ns,0.009163432,-0.00017721,0.000208615,-0.849460426,0.396280668,neg,ns,0.793976952,AL772407.1,AL772407.1_Intergenic_upstream,2,63752740,63752789,63752740,63752741,50,+,CGAGGCAATTAGCTGGTTACAACTGGAACTACCAGGTCCTATTTAAAATA,Distal Intergenic,2,63410771,63411266,496,2,AL772407.1-201,-341474,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,7,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2772,cg07670450,0.000053,0.00000476,11.15065476,1.67E-24,gain,yes,-0.00000941,0.00000808,-1.165005591,0.24491241,neg,ns,0.005408296,0.002366708,2.285155997,0.02297876,pos,ns,1.63867341,0.0000823,0.0000814,1.011769052,0.312437531,pos,ns,0.108541331,Prdm13,Prdm13_Promoter,4,21688100,21688149,21688100,21688101,50,+,CGAGTTTTATTCTGTCCTGTGGCTCAGAGTTGAAGTTCCCCAAGTGAAAT,Promoter (2-3kb),4,21677481,21685963,8483,2,Prdm13-202,-2137,Prdm13-205;Prdm13-201;Prdm13-202;Prdm13-203;Prdm13-206;Prdm13-204,Prdm13;Prdm13;Prdm13;Prdm13;Prdm13;Prdm13,0;0;0;0;0;-2255,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,19,23,230025,ENSMUSG00000040478,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7126,cg25409532,-0.0000143,0.0000036,-3.98097282,0.0000855,loss,ns,-0.00000713,0.00000612,-1.164957226,0.244931958,neg,ns,-0.007089348,0.00179268,-3.954608364,0.000095,neg,ns,4.022088895,0.000171587,0.0000617,2.783243564,0.00571216,pos,ns,0.942168526,Tll2,Tll2_Intron,19,41152937,41152986,41152937,41152938,50,-,CGATTAAAAATATGTCTAAACAGATGTTCTGCTTAGCCTGGAAGAAGGAT,"Intron (Tll2-201/Tll2, intron 3 of 20)",19,41082753,41206835,124083,2,Tll2-201,53849,Tll2-201;Tll2-202,Tll2;Tll2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,4,24087,ENSMUSG00000025013,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12876,cg07002423,0.000115007,0.0000098,11.74109416,1.39E-26,gain,yes,-0.0000194,0.0000166,-1.164780107,0.245003556,neg,ns,0.005583001,0.004875196,1.145185117,0.253015818,pos,ns,0.596852326,-0.0000655,0.000167658,-0.390517577,0.696422078,neg,ns,0.146959019,Cadm2,Cadm2_Exon,16,67620161,67620210,67620161,67620162,50,-,CGGGGATTACCTTGTAGCAGGAGCCCGCAGACACTGTAGAAGCGGAGAAC,Promoter (<=1kb),16,66655421,67620908,965488,2,Cadm2-201,698,Cadm2-201;Cadm2-202;Cadm2-203;Cadm2-204,Cadm2;Cadm2;Cadm2;Cadm2,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,9,239857,ENSMUSG00000064115,conserved gene and region,16,67619938,67620219,282,*,282,19,0.641843972,0.693322981,0.067375887,1.37E-11,CpGisland,TRUE,U3,Pr-B
21454,cg09892203,0.0000314,0.00000348,9.010439571,2.16E-17,gain,yes,-0.00000689,0.00000592,-1.164567018,0.245089714,neg,ns,0.000916822,0.001732911,0.529064596,0.597139259,pos,ns,0.223924375,-0.0000674,0.0000596,-1.131132978,0.258873424,neg,ns,0.016929184,Cacng4,Cacng4_Exon,11,107794303,107794352,107794351,107794352,50,-,GGGCGGGGGCCCGTCGTCCATGGTCAGGTTGGTGCCGTTGCAGATGTGCG,Promoter (<=1kb),11,107732357,107794557,62201,2,Cacng4-201,205,Cacng4-201,Cacng4,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,8,54377,ENSMUSG00000020723,conserved gene and region,11,107793647,107794919,1273,*,1273,155,0.743912019,0.885336743,0.121759623,7.27E-132,CpGisland,TRUE,U3,Pr-B
6606,cg19839218,0.00000861,0.00000179,4.805555423,0.00000241,gain,ns,-0.00000355,0.00000305,-1.164505565,0.245114565,neg,ns,0.002002268,0.000892193,2.244209967,0.025524248,pos,ns,1.593047043,-0.000056,0.0000307,-1.826662796,0.068712016,neg,ns,0.027529459,Rreb1,Rreb1_Intron,13,37827953,37828002,37827953,37827954,50,-,CGTGAGCCCAGATCCGGACGAGCAGTTCACATTCCATTACGAAATTCTAC,"Intron (Rreb1-204/Rreb1, intron 1 of 3)",13,37778400,37893849,115450,1,Rreb1-204,49553,Rreb1-204;Rreb1-208;Rreb1-203;Rreb1-207;Rreb1-210;Rreb1-206;Rreb1-202,Rreb1;Rreb1;Rreb1;Rreb1;Rreb1;Rreb1;Rreb1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,10,68750,ENSMUSG00000039087,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
27607,cg18429525,-0.0000071,0.00000252,-2.81939867,0.005121066,loss,ns,0.00000498,0.00000428,1.164468158,0.245129693,pos,ns,-0.002550141,0.001253823,-2.033892361,0.042813644,neg,ns,1.368417808,0.000094,0.0000431,2.181097318,0.029927454,pos,ns,0.953988528,Vangl2,Vangl2_Exon,1,172008587,172008636,172008635,172008636,50,-,TAGACAGGGAAGTCATGGTAATACTTCTCCAGGATCCACACTGCCACGCG,"Exon (Vangl2-201/Vangl2, exon 5 of 8)",1,172000960,172027295,26336,2,Vangl2-201,18659,Vangl2-201;Vangl2-202;Vangl2-203;Vangl2-205;Vangl2-206;Vangl2-204,Vangl2;Vangl2;Vangl2;Vangl2;Vangl2;Vangl2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,6,93840,ENSMUSG00000026556,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11690,cg20506065,-0.00000136,0.00000143,-0.95005277,0.342825519,loss,ns,0.00000282,0.00000242,1.164448336,0.245137709,pos,ns,0.001691701,0.000710044,2.382528353,0.01779677,pos,ns,1.749658808,-0.0000316,0.0000244,-1.295916871,0.195968148,neg,ns,0.057675887,Ddit4,Ddit4_Exon,10,59951333,59951382,59951381,59951382,50,-,GCCACTGTTGCTGCTGTCCAGGGACTCGCAGTCCGAGCTCTCCAGGCTCG,Promoter (<=1kb),10,59949669,59951834,2166,2,Ddit4-201,452,Ddit4-201,Ddit4,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,74747,ENSMUSG00000020108,conserved gene and region,10,59951140,59952128,989,*,989,80,0.654196158,0.763264519,0.080889788,5.10E-53,CpGisland,TRUE,U1,Pr-A
21162,cg00811894,0.0000396,0.0000206,1.924580363,0.055196905,gain,ns,0.0000407,0.0000349,1.164441725,0.245140383,pos,ns,0.028850133,0.010234905,2.818798176,0.005130412,pos,ns,2.28984774,-0.001528664,0.000351978,-4.343072679,0.0000191,neg,ns,0.338938866,Mpped2,Mpped2_Exon,2,106575652,106575701,106575652,106575653,50,-,CGGAAAAGTCAGTAACTCACCGCCCTGGGACAAGGTGAAGGCAAGGCCAG,"Exon (Gm14014-201/Gm14014-201, exon 2 of 2)",2,106693269,106868356,175088,1,Mpped2-202,-117617,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,16,33,77015,ENSMUSG00000016386,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26112,cg07211246,-0.00000305,0.00000564,-0.540124027,0.589499304,loss,ns,0.0000112,0.00000958,1.164406931,0.245154455,pos,ns,0.005029541,0.002807356,1.791558145,0.074179061,pos,ns,1.129718669,-0.000306029,0.0000965,-3.169817087,0.001677722,neg,ns,0.884220712,Gm2505,Gm2505_Intergenic_downstream,3,143972225,143972274,143972273,143972274,50,-,ACATTATGCAGTTATGCAAATAATCTGTTATATCTAGGCACATTATGCCG,Distal Intergenic,3,143872995,143873819,825,1,Gm2505-201,99279,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,37,100039938,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10300,cg19961913,-0.00000929,0.00000536,-1.733011477,0.084088061,loss,ns,-0.0000106,0.00000911,-1.16437949,0.245165554,neg,ns,0.018212177,0.002668513,6.82484033,4.64E-11,pos,yes,10.33390033,-0.000366777,0.0000918,-3.996705868,0.0000803,neg,ns,0.070811652,Hibadh,Hibadh_Intron,6,52584555,52584604,52584555,52584556,50,-,CGTGCCACCCAGCTGCTGCATGGTCACGTCCATCTGGAGCTCTCTAGCTA,"Intron (Hibadh-201/Hibadh, intron 4 of 7)",6,52546228,52640389,94162,2,Hibadh-201,55785,Hibadh-201;Hibadh-203,Hibadh;Hibadh,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,13,58875,ENSMUSG00000029776,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6874,cg00612583,-0.00000243,0.00000366,-0.665077802,0.506495211,loss,ns,0.00000723,0.00000621,1.164294395,0.245199973,pos,ns,0.001827107,0.001820324,1.003726424,0.316293317,pos,ns,0.499909984,-0.000119244,0.0000626,-1.904825527,0.05772806,neg,ns,0.909872574,Slc35b3,Slc35b3_Intergenic_upstream,13,39193355,39193404,39193403,39193404,50,+,CTGAGTTCCATTTTCATCTGAACCCACATGGCAAAGCTGTAAATGATACG,Distal Intergenic,13,38932136,38960875,28740,2,Slc35b3-201,-232480,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,9,11,108652,ENSMUSG00000021432,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18153,cg00901685,0.0000475,0.00000609,7.802036062,9.39E-14,gain,yes,-0.000012,0.0000103,-1.164241848,0.245221229,neg,ns,0.004224929,0.003030301,1.394227791,0.164247274,pos,ns,0.78450183,0.0000402,0.000104212,0.386163001,0.699640849,pos,ns,0.112827189,Hsd17b12,Hsd17b12_Intron,2,94243802,94243851,94243802,94243803,50,-,CGGAATGAACTGTGACTAGAGCCATGACGCAGCCAGCGCGCATTACTCAC,"Intron (Mir670hg-205/Mir670hg-205, intron 2 of 5)",2,94032689,94157964,125276,2,Hsd17b12-201,-85887,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,14,19,56348,ENSMUSG00000027195,conserved gene but different region,2,94243768,94243904,137,*,137,10,0.525547445,1.064491065,0.072992701,0.00000123,CpGisland,TRUE,U13,Hc-P
8945,cg05362511,-0.0000129,0.00000426,-3.036067419,0.002600193,loss,ns,-0.00000842,0.00000723,-1.164014725,0.245313119,neg,ns,-0.001255908,0.002118366,-0.592866298,0.553702875,neg,ns,0.256723222,-0.0000317,0.0000729,-0.435786952,0.663294605,neg,ns,0.931957074,Bmp4,Bmp4_Exon,14,46384301,46384350,46384349,46384350,50,-,CCTTGAGGTAACGATCGGCTAATCCTGACATGCTGGCCCTGGTGGGTCCG,"Exon (Bmp4-201/Bmp4, exon 4 of 4)",14,46383520,46390669,7150,2,Bmp4-201,6319,Bmp4-201;Bmp4-202;Bmp4-204;Bmp4-203;Gm15217-202;Gm15217-201;Gm15217-203,Bmp4;Bmp4;Bmp4;Bmp4;Gm15217;Gm15217;Gm15217,0;0;0;6185;4887;4834;3174,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,8,12159,ENSMUSG00000021835,conserved gene and region,14,46384071,46384350,280,*,280,15,0.592857143,0.612870276,0.053571429,6.46E-08,CpGisland,TRUE,NA,NRS
27211,cg03871262,-0.00000326,0.00000155,-2.103009013,0.036270811,loss,ns,0.00000307,0.00000263,1.163622045,0.245472048,pos,ns,0.000708736,0.000771868,0.918208174,0.359223732,pos,ns,0.444634979,-0.0000329,0.0000265,-1.240486782,0.21573343,neg,ns,0.05544292,Plcg1,Plcg1_Exon,2,160731876,160731925,160731876,160731877,50,+,CGAGGTGCTGCACCTCTGCCGCAGCCTCGAGGTGGGCACCGTCATGACTT,Promoter (<=1kb),2,160731300,160762502,31203,1,Plcg1-208,576,Plcg1-208;Plcg1-202;Plcg1-212;Plcg1-203,Plcg1;Plcg1;Plcg1;Plcg1,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,18803,ENSMUSG00000016933,mapped to different genes,2,160731148,160732172,1025,*,1025,131,0.746341463,0.918220113,0.127804878,9.55E-115,CpGisland,TRUE,NA,NRS
8152,cg27621292,-0.00000337,0.000006,-0.560755244,0.575369464,loss,ns,-0.0000119,0.0000102,-1.16357954,0.245489255,neg,ns,-0.001928944,0.002987191,-0.645738399,0.518926473,neg,ns,0.284894174,-0.0000549,0.000102729,-0.534145515,0.593623693,neg,ns,0.864876286,Ebf1,Ebf1_Intron,11,44800879,44800928,44800879,44800880,50,-,CGGCTGGAGTCCTTCCCTGTGACATGTGGAACAGCAAGGGGCCTAATAGT,"Intron (Ebf1-203/Ebf1, intron 6 of 15)",11,44617317,45004995,387679,1,Ebf1-203,183562,Ebf1-203;Ebf1-202;Ebf1-201,Ebf1;Ebf1;Ebf1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,80,13591,ENSMUSG00000057098,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10991,cg04472379,-0.00000107,0.00000262,-0.408306172,0.68333079,loss,ns,0.00000518,0.00000445,1.163576971,0.245490295,pos,ns,0.000780502,0.00130446,0.598333554,0.550054294,pos,ns,0.25959444,-0.0000405,0.0000449,-0.902952059,0.367252418,neg,ns,0.945946894,Macroh2a1,Macroh2a1_Exon,13,56088334,56088383,56088382,56088383,50,-,AACTTGCAACTATAACAGGTAAACAAATGTATATCAACTGTGTTGGACCG,"Exon (Macroh2a1-202/Macroh2a1, exon 6 of 9)",13,56073619,56135631,62013,2,Macroh2a1-201,47248,Macroh2a1-201;Macroh2a1-202;Macroh2a1-203;Macroh2a1-206,Macroh2a1;Macroh2a1;Macroh2a1;Macroh2a1,0;0;-3813;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,9,26914,ENSMUSG00000015937,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6537,cg09262995,-0.0000771,0.0000107,-7.183656153,5.08E-12,loss,yes,0.0000212,0.0000182,1.16355691,0.245498417,pos,ns,-0.015142391,0.005342032,-2.834575344,0.00488994,neg,ns,2.3106965,0.000256661,0.000183712,1.397082312,0.163388032,pos,ns,0.644897293,Zfp536,Zfp536_Intron,7,37640101,37640150,37640149,37640150,50,+,GACTCGAGAATAAAACACATTTCTTTCACTACCACACACCATTAATATCG,"Intron (Zfp536-202/Zfp536, intron 4 of 6)",7,37479104,37769624,290521,2,Zfp536-202,129474,Zfp536-202;Zfp536-201;Zfp536-203;Zfp536-206;Zfp536-209;Zfp536-208,Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,73,112,243937,ENSMUSG00000043456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6458,cg02996066,0.0000119,0.00000479,2.495954709,0.013081202,gain,ns,0.00000946,0.00000813,1.163142605,0.245666189,pos,ns,0.005629489,0.0023819,2.363444576,0.018722699,pos,ns,1.727631541,-0.000175971,0.0000819,-2.148261237,0.032467556,neg,ns,0.068531188,Zfp536,Zfp536_Intron,7,37346304,37346353,37346352,37346353,50,-,TCACCATCTGTTTGACTAGAATTGTTGGCACATTTCAGCTAAGCCTCGCG,"Intron (Zfp536-211/Zfp536, intron 3 of 3)",7,37318024,37568390,250367,2,Zfp536-211,222037,Zfp536-211,Zfp536,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,73,112,243937,ENSMUSG00000043456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14533,cg25771650,-4.94E-08,0.00000467,-0.010563948,0.99157814,loss,ns,-0.00000923,0.00000794,-1.162947065,0.245745401,neg,ns,0.0000471,0.002325812,0.020251717,0.983855601,pos,ns,0.007068638,-0.0000902,0.00008,-1.127774279,0.260287362,neg,ns,0.84831691,Gpaa1,Gpaa1_threeUTR,15,76333459,76333508,76333507,76333508,50,-,GACAGGGCTTTGGAGGGCATGTTCCGCAAGCTCAACCACCTCCTGGAGCG,3' UTR,15,76331231,76334907,3677,1,Gpaa1-201,2228,Exosc4-201;Exosc4-203;Exosc4-202;Gpaa1-201;Gpaa1-204;Gpaa1-210;Gpaa1-202;Gpaa1-207;Gpaa1-208;Gpaa1-203;Gpaa1-212;Gpaa1-206;Gpaa1-211;Gpaa1-209;Gpaa1-205;Rps6-ps1-201,Exosc4;Exosc4;Exosc4;Gpaa1;Gpaa1;Gpaa1;Gpaa1;Gpaa1;Gpaa1;Gpaa1;Gpaa1;Gpaa1;Gpaa1;Gpaa1;Gpaa1;Rps6-ps1,6062;5994;5868;0;0;0;2109;1946;1460;0;1171;932;0;0;-223;-4108,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,TRUE,FALSE,threeUTR,1,1,14731,ENSMUSG00000022561,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6339,cg01645746,0.00000285,0.00000669,0.425899712,0.670476472,gain,ns,0.0000132,0.0000114,1.162742852,0.245828146,pos,ns,0.0000581,0.003327437,0.017471249,0.986071908,pos,ns,0.006091413,-0.000143114,0.00011443,-1.250667812,0.21199884,neg,ns,0.486194357,Pknox2,Pknox2_Intron,9,36938660,36938709,36938708,36938709,50,-,CTGCCATTTAAACAGCCACTAGATCAATTAGGAATGAAAGGCACAAATCG,"Intron (Pknox2-207/Pknox2, intron 3 of 10)",9,36890982,37083309,192328,2,Pknox2-207,144600,Pknox2-207;Pknox2-201;Pknox2-202;Pknox2-203;Pknox2-206;Pknox2-204;Pknox2-205;Pknox2-208;Pknox2-210;Pknox2-209,Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,47,208076,ENSMUSG00000035934,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21210,cg21329093,-0.0000154,0.0000104,-1.485367369,0.13846272,loss,ns,0.0000205,0.0000176,1.162641312,0.245869296,pos,ns,-0.005522986,0.005156282,-1.071117941,0.284949604,neg,ns,0.545231942,0.00000849,0.000177324,0.047900275,0.961826565,pos,ns,0.586374132,Ppfia2,Ppfia2_Exon,10,106767483,106767532,106767483,106767484,50,-,CGACTGAGGGTTTCTTTAGAAAGAGTCTCTGCACTGGAAGAAGAACTAGC,"Exon (Ppfia2-201/Ppfia2, exon 6 of 32)",10,106470339,106932492,462154,1,Ppfia2-201,297144,Ppfia2-201;Ppfia2-202;Ppfia2-203,Ppfia2;Ppfia2;Ppfia2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,9,327814,ENSMUSG00000053825,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10658,cg14720154,-0.00000851,0.00000422,-2.015484308,0.044716617,loss,ns,0.00000834,0.00000717,1.162606812,0.245883278,pos,ns,0.000993352,0.002100872,0.472828604,0.636668194,pos,ns,0.196086845,-0.0000232,0.0000722,-0.321633634,0.74794702,neg,ns,0.875577367,Bcl2l2,Bcl2l2_threeUTR,14,54885482,54885531,54885482,54885483,50,+,CGTGGCACTGGGGGCCCTGGTAACTGTAGGGGCCTTTTTTGCTAGCAAGT,3' UTR,14,54883377,54888234,4858,1,Bcl2l2-201,2105,Bcl2l2-201;Bcl2l2-202;Bcl2l2-204;Bcl2l2-203;Bcl2l2-205;Gm20521-201,Bcl2l2;Bcl2l2;Bcl2l2;Bcl2l2;Bcl2l2;Gm20521,0;2101;0;0;1975;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,4,12050,ENSMUSG00000022194,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5513,cg26717518,-0.00000675,0.00000167,-4.046645069,0.0000657,loss,ns,0.00000329,0.00000283,1.162572144,0.245897329,pos,ns,-0.000222243,0.000829953,-0.267778102,0.789048206,neg,ns,0.102896463,0.0000127,0.0000285,0.444076865,0.657296837,pos,ns,0.955324881,Pbx3,Pbx3_Intergenic_downstream,2,34157585,34157634,34157585,34157586,50,+,CGAGAGAGATCTCAGATTTATCACCGCCTGGTTAGAATTATTAATGATTT,Distal Intergenic,2,34172873,34288852,115980,2,Pbx3-210,131218,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,82,18516,ENSMUSG00000038718,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3618,cg00988788,0.00000491,0.00000586,0.838216515,0.402554936,gain,ns,0.0000116,0.00000996,1.162557284,0.245903352,pos,ns,0.003090097,0.002917051,1.059322429,0.290277648,pos,ns,0.537186405,-0.000162294,0.000100317,-1.61781241,0.106720036,neg,ns,0.917153131,Gm12067,Gm12067_Intergenic_upstream,11,24792892,24792941,24792940,24792941,50,-,GTGCTTCCAGGCTGAATATGTTAAATAATTCAACAGTTAAGTCATAAGCG,Distal Intergenic,11,24552438,24553962,1525,2,Gm12067-201,-238979,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,26,58,100417843,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1755,cg18377217,0.0000143,0.00000581,2.468023409,0.014125708,gain,ns,0.0000115,0.00000986,1.162549208,0.245906626,pos,ns,0.001782007,0.002889403,0.616738918,0.53785961,pos,ns,0.269331067,0.00000956,0.0000994,0.096209023,0.92341673,pos,ns,0.043374322,Kctd1,Kctd1_fiveUTR,18,15063603,15063652,15063603,15063604,50,-,CGCTATATTGGACCGCAGCGCTGAGAGCTTTTGTGTTTAATGACCTTCAG,Promoter (<=1kb),18,14969400,15063618,94219,2,Kctd1-202,0,Kctd1-201;Kctd1-202;Kctd1-206;Kctd1-205,Kctd1;Kctd1;Kctd1;Kctd1,0;0;0;-1714,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,9,24,106931,ENSMUSG00000036225,conserved gene but different region,18,15063315,15063752,438,*,438,43,0.673515982,0.892352885,0.098173516,1.42E-32,CpGisland,TRUE,U3,Pr-B
2225,cg07711660,0.0000549,0.0000155,3.539363611,0.000462554,gain,ns,-0.0000306,0.0000264,-1.162547711,0.245907232,neg,ns,-0.014414823,0.0077215,-1.866842208,0.062867456,neg,ns,1.201574113,0.001012774,0.000265542,3.813990129,0.000165008,pos,ns,0.765981804,Gm30341,Gm30341_Intergenic_upstream,3,18695625,18695674,18695625,18695626,50,+,CGAAAGGACCAGACAGCTGTAGCTCTCAACAGCTTTGGTTTTCATCAGTG,Distal Intergenic,3,18753077,18753365,289,1,Gm30341-201,-57403,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,17,23,102632201,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19076,cg09646359,0.0000247,0.0000122,2.025416866,0.043681097,gain,ns,0.0000241,0.0000207,1.162458151,0.245943535,pos,ns,0.004187191,0.006078372,0.688867094,0.49142214,pos,ns,0.308545281,0.0000283,0.000209035,0.135162248,0.892571313,pos,ns,0.252061346,Neurod2,Neurod2_threeUTR,11,98325447,98325496,98325495,98325496,50,-,TTAATCGTCATTAAACTGAACAGAAACACGCAATGCACTTCGGGTGTCCG,3' UTR,11,98325415,98329648,4234,2,Neurod2-201,4152,Neurod2-201,Neurod2,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,22,18013,ENSMUSG00000038255,conserved gene and region,11,98325452,98325643,192,*,192,11,0.541666667,0.805184903,0.057291667,0.00000315,CpGisland,TRUE,U13,Hc-P
2445,cg06169536,-0.0000115,0.000014,-0.824325238,0.410388569,loss,ns,0.0000276,0.0000237,1.162389073,0.245971538,pos,ns,-0.000530231,0.006947567,-0.076318904,0.939214617,neg,ns,0.027235157,0.00008,0.000238926,0.334989817,0.737859326,pos,ns,0.286368792,Ptf1a,Ptf1a_Intergenic_downstream,2,19455498,19455547,19455546,19455547,50,-,TGAAACCGGCCTCAGCCCTTTCTGGCATTAATTACACTGCTGTCCAGCCG,Distal Intergenic,2,19445663,19447501,1839,1,Ptf1a-201,9884,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,14,21,19213,ENSMUSG00000026735,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
5431,cg24243995,-0.0000109,0.00000542,-2.006701547,0.045649526,loss,ns,-0.0000107,0.00000921,-1.162171797,0.246059633,neg,ns,-0.004632598,0.002697501,-1.71736628,0.086910972,neg,ns,1.060925391,0.0000506,0.0000928,0.545288989,0.585946884,pos,ns,0.860019751,Mvb12b,Mvb12b_Intron,2,33941576,33941625,33941576,33941577,50,-,CGCCGATTACTATGAATGCCACCATCTGGTACGCCACGTGGACATCATAA,"Intron (Gm13403-201/Gm13403-201, intron 1 of 1)",2,33729953,33887946,157994,2,Mvb12b-201,-53679,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,28,47,72543,ENSMUSG00000038740,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11221,cg07895812,-0.0000025,0.00000176,-1.419138923,0.156863195,loss,ns,-0.00000348,0.000003,-1.162167019,0.246061571,neg,ns,-0.000990447,0.000878398,-1.127560805,0.26037741,neg,ns,0.584396697,0.0000267,0.0000302,0.884315802,0.377211098,pos,ns,0.958216146,Epb41l4b,Epb41l4b_Exon,4,57076978,57077027,57077026,57077027,50,-,GAGAATATTCACAGCCATCTCTTCCCTACAAACAAACGAAGTGACAATCG,"Exon (Epb41l4b-203/Epb41l4b, exon 9 of 26)",4,56991972,57143437,151466,2,Epb41l4b-203,66410,Epb41l4b-203;Epb41l4b-201;Epb41l4b-206;Epb41l4b-205,Epb41l4b;Epb41l4b;Epb41l4b;Epb41l4b,0;0;0;61165,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,54357,ENSMUSG00000028434,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21824,cg01056020,-0.00000321,0.00000391,-0.819678077,0.413029401,loss,ns,-0.00000772,0.00000665,-1.162028034,0.246117935,neg,ns,-0.005202058,0.001947381,-2.671309058,0.007954666,neg,ns,2.099378064,-0.0000181,0.000067,-0.270803223,0.786722599,neg,ns,0.863169418,Gm1943,Gm1943_Intron,8,109214380,109214429,109214380,109214381,50,+,CGCCAATGGCTGCTATTATGGGCTATTAGCAAATCGGGGCTGAGAGTGAA,"Intron (D030068K23Rik-202/D030068K23Rik-202, intron 5 of 9)",8,109340691,109340864,174,2,Gm1943-201,126435,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,28,384864,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16085,cg08013737,0.000002,0.00000432,0.463060744,0.643645731,gain,ns,0.00000852,0.00000733,1.161954058,0.246147939,pos,ns,0.004515154,0.002148883,2.101163591,0.036433689,pos,ns,1.438496851,-0.000184307,0.0000739,-2.494013199,0.013151521,neg,ns,0.910862413,Acaca,Acaca_Intron,11,84370455,84370504,84370503,84370504,50,+,TGTTCTTTATTAGGTCACATGGGCCCTAATATATAAGTTATAAGTTACCG,"Intron (Acaca-202/Acaca, intron 48 of 55)",11,84173122,84401651,228530,1,Acaca-202,197333,Acaca-202;Acaca-201,Acaca;Acaca,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,28,28,107476,ENSMUSG00000020532,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27794,cg17660794,0.0000582,0.00000768,7.585360525,3.90E-13,gain,yes,-0.0000152,0.000013,-1.161950763,0.246149275,neg,ns,-0.003636023,0.003821302,-0.951514163,0.342084701,neg,ns,0.465866348,0.000195199,0.000131414,1.485369231,0.138462228,pos,ns,0.78400075,Gpatch2,Gpatch2_Intron,1,187271029,187271078,187271077,187271078,50,+,TCTTGCTGGCAGAGATAATGTCAAAACCTCATTTCTCCTTACATGCCTCG,"Intron (Gpatch2-207/Gpatch2, intron 5 of 10)",1,187215511,187349640,134130,1,Gpatch2-207,55518,Gpatch2-207;Gpatch2-202;Gpatch2-204;Gpatch2-209;Gpatch2-206;Gpatch2-208,Gpatch2;Gpatch2;Gpatch2;Gpatch2;Gpatch2;Gpatch2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,10,67769,ENSMUSG00000039210,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
336,cg19437183,0.0000204,0.0000032,6.358987359,7.27E-10,gain,yes,-0.00000633,0.00000544,-1.161775435,0.246220397,neg,ns,0.000208848,0.001595036,0.130936376,0.895910568,pos,ns,0.04773534,-0.0000745,0.0000549,-1.358313349,0.17535194,neg,ns,0.059074593,Zfhx4,Zfhx4_Promoter,3,5210422,5210471,5210470,5210471,50,-,TTCTTGCCTCTGAGGAGCTGCCCAATGACTGGAGGTCTGGGATTAAAGCG,Promoter (8-9kb),3,5218526,5413165,194640,1,Zfhx4-203,-8104,NA,NA,NA,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,10,77,80892,ENSMUSG00000025255,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8023,cg21693485,0.0000164,0.0000113,1.446976792,0.148913838,gain,ns,0.0000223,0.0000192,1.161676045,0.24626072,pos,ns,0.0000317,0.005632526,0.005629641,0.995511841,pos,ns,0.00195357,0.000291029,0.000193702,1.502455356,0.133997502,pos,ns,0.341206187,Pax2,Pax2_Intergenic_upstream,19,44695799,44695848,44695799,44695800,50,+,CGTGGTGATAACCAGAGGCGTGAAATTACAAAAGTAAAATTTGTGGGACT,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-60197,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7898,cg22760044,-0.0000057,0.00000499,-1.14344811,0.253734819,loss,ns,0.00000984,0.00000847,1.161603879,0.246290002,pos,ns,0.00313402,0.002482771,1.262307578,0.207786933,pos,ns,0.682381767,-0.0000575,0.0000854,-0.673262759,0.50128175,neg,ns,0.89468439,Pax5,Pax5_Intron,4,44623286,44623335,44623334,44623335,50,+,CGCAGTAAGGACATTCAATGTCATTTACATAATGGCATTTCTATCGCACG,"Intron (Pax5-201/Pax5, intron 6 of 9)",4,44524757,44710487,185731,2,Pax5-201,87152,Pax5-201;Pax5-202;Pax5-203;Pax5-204;Pax5-205;Pax5-207;Pax5-206;Pax5-209;Pax5-210;Pax5-212;Pax5-213;Pax5-214;Pax5-215;Pax5-220;Pax5-211,Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,19,45,18507,ENSMUSG00000014030,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9541,cg13509434,-0.00000898,0.00000754,-1.190952411,0.234583362,loss,ns,0.0000149,0.0000128,1.161481243,0.246339768,pos,ns,0.001109522,0.003751349,0.29576623,0.767606632,pos,ns,0.114861282,-0.000221595,0.000129009,-1.717673103,0.086854882,neg,ns,0.641134953,Grik2,Grik2_Exon,10,49244343,49244392,49244391,49244392,50,+,CAACTCCAAACCAGAAACTATTTAGCAAGGTAAAATTGTTTTCCACCACG,"Exon (Grik2-207/Grik2, exon 13 of 17)",10,49094833,49788766,693934,2,Grik2-207,544374,Grik2-207;Grik2-203;Grik2-202;Grik2-205;Grik2-209;Grik2-204;Grik2-201;Grik2-208,Grik2;Grik2;Grik2;Grik2;Grik2;Grik2;Grik2;Grik2,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,12,14806,ENSMUSG00000056073,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27853,cg18147604,-0.00000502,0.0000044,-1.141465698,0.254557145,loss,ns,0.00000868,0.00000747,1.161250938,0.246433244,pos,ns,-0.001943139,0.002189372,-0.887532588,0.375480295,neg,ns,0.425412849,0.000160276,0.0000753,2.128720634,0.034065568,pos,ns,0.873224597,Ush2a,Ush2a_Intron,1,188568458,188568507,188568458,188568459,50,-,CGAAGATGACAGAAATCTTTCCGCCCACAGATTAACATAATGAAGGAGAA,"Intron (Ush2a-201/Ush2a, intron 29 of 70)",1,188263034,188965041,702008,1,Ush2a-201,305424,Ush2a-201;Ush2a-204,Ush2a;Ush2a,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,33,36,22283,ENSMUSG00000026609,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22912,cg24424917,-0.00000479,0.00000517,-0.926651259,0.354828486,loss,ns,0.0000102,0.00000878,1.161219442,0.24644603,pos,ns,-0.002187489,0.002572468,-0.85034618,0.395788938,neg,ns,0.402536348,-0.0000365,0.0000885,-0.412205133,0.680473972,neg,ns,0.899066449,Gm5357,Gm5357_Intergenic_upstream,8,116124432,116124481,116124480,116124481,50,+,GATTAATGCTGAGTGCGGGTGGAAAATGCACCCTCTCATTTGCTAACACG,Distal Intergenic,8,116489186,116491109,1924,1,Gm5357-201,-364705,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,15,15,384868,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20614,cg22201026,-0.0000319,0.00000686,-4.65771328,0.00000475,loss,ns,-0.0000135,0.0000116,-1.161204299,0.246452177,neg,ns,-0.007313927,0.003412163,-2.143486627,0.032851941,neg,ns,1.483438964,-0.00000911,0.000117344,-0.07767503,0.938136667,neg,ns,0.925531932,Rsbn1,Rsbn1_Exon,3,103928458,103928507,103928506,103928507,50,-,CTTAAAATGTACAATAAGGAAGTACAAACCGTCTGTGCTGGCCTGACCCG,"Exon (Rsbn1-201/Rsbn1, exon 2 of 8)",3,103914120,103966613,52494,1,Rsbn1-201,14338,Rsbn1-201;Rsbn1-202;Rsbn1-203;Rsbn1-204,Rsbn1;Rsbn1;Rsbn1;Rsbn1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,16,229675,ENSMUSG00000044098,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19478,cg04728121,-0.00000449,0.00000188,-2.388725766,0.017504874,loss,ns,0.00000371,0.0000032,1.161129372,0.246482596,pos,ns,0.001245969,0.000936463,1.330505617,0.184329622,pos,ns,0.734404867,-0.00000582,0.0000322,-0.180759674,0.856674333,neg,ns,0.058445348,Foxn3,Foxn3_fiveUTR,12,99393039,99393088,99393039,99393040,50,+,CGGCGAGAAATTGTTTCCACTGCAAACAAAAAAAGGCGACACATGACCAG,Promoter (<=1kb),12,99195094,99393072,197979,2,Foxn3-209,0,Foxn3-201;Foxn3-209;Foxn3-202;Foxn3-207;Foxn3-208;Foxn3-205;Foxn3-214,Foxn3;Foxn3;Foxn3;Foxn3;Foxn3;Foxn3;Foxn3,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,17,71375,ENSMUSG00000033713,conserved gene but different region,12,99392262,99393399,1138,*,1138,139,0.70913884,0.973607435,0.122144113,1.52E-118,CpGisland,TRUE,U1,Pr-A
4322,cg11458204,-0.000000668,0.0000096,-0.069630792,0.944532422,loss,ns,0.0000189,0.0000163,1.160999144,0.246535472,pos,ns,0.000196956,0.004777962,0.04122179,0.967145619,pos,ns,0.014508131,-0.0000542,0.000164314,-0.329568317,0.741948736,neg,ns,0.881299465,Ccdc85a,Ccdc85a_Exon,11,28396158,28396207,28396206,28396207,50,-,AAAGAACCCTTAGTAGAAAATCAACAACTTTGTTATTAAAACAAAAGTCG,"Exon (Ccdc85a-202/Ccdc85a, exon 4 of 5)",11,28385685,28584296,198612,2,Ccdc85a-202,188089,Ccdc85a-202;Ccdc85a-204;Ccdc85a-201;Ccdc85a-206;Ccdc85a-207;Ccdc85a-205,Ccdc85a;Ccdc85a;Ccdc85a;Ccdc85a;Ccdc85a;Ccdc85a,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,3,216613,ENSMUSG00000032878,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9135,cg01880253,-0.00000328,0.00000182,-1.79878201,0.073025762,loss,ns,0.0000036,0.0000031,1.160828275,0.246604861,pos,ns,0.000345775,0.000908064,0.380782474,0.70362547,pos,ns,0.152658448,0.00000836,0.0000312,0.267753567,0.789067076,pos,ns,0.959339832,Ptpn5,Ptpn5_threeUTR,7,47077796,47077845,47077844,47077845,50,+,AGTTTTGCTCAAAATGCTCCGTTTATTGCTCTATTCAATGACCACGAGCG,3' UTR,7,47077795,47133684,55890,2,Ptpn5-202,55839,LOC102637012-201;Ptpn5-202;Ptpn5-209;Ptpn5-201;Ptpn5-205;Ptpn5-207;Ptpn5-203,LOC102637012;Ptpn5;Ptpn5;Ptpn5;Ptpn5;Ptpn5;Ptpn5,-3109;0;0;0;13491;10723;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,4,19259,ENSMUSG00000030854,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3510,cg19465016,-0.0000213,0.0000103,-2.082623973,0.038105054,loss,ns,-0.0000202,0.0000174,-1.160817239,0.246609343,neg,ns,-0.012184587,0.005101658,-2.38835815,0.01752207,neg,ns,1.756414582,0.0000918,0.000175446,0.52332739,0.601120318,pos,ns,0.83029516,Bcl11a,Bcl11a_Intergenic_downstream,11,24244631,24244680,24244679,24244680,50,+,TTGCCAATAAAGCTGTTGTCATTCAGTAAGTGAATTTGTTGTACTACTCG,Distal Intergenic,11,24142379,24163291,20913,1,Bcl11a-206,102252,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,15,98,14025,ENSMUSG00000000861,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11253,cg01526265,0.0000161,0.0000109,1.481017102,0.139617673,gain,ns,0.0000214,0.0000184,1.160738768,0.246641215,pos,ns,0.007136621,0.005403763,1.320676201,0.187583487,pos,ns,0.726805394,-0.0000497,0.000185835,-0.267573354,0.789205678,neg,ns,0.042902441,Gm13526,Gm13526_Intron,2,57182078,57182127,57182126,57182127,50,-,GGGGATGTAGCTCAGTGGTAGAGCGCGCGCTTCGCATGTGTGAGGTCCCG,"Intron (4930555B11Rik-201/4930555B11Rik-201, intron 1 of 3)",2,57214054,57214242,189,2,Gm13526-201,32164,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,3,100041900,NA,mapped to different genes,2,57182072,57182157,86,*,86,8,0.651162791,0.887741936,0.093023256,0.0000038,CpGisland,TRUE,U1,Pr-A
8937,cg11405955,-0.0000529,0.0000133,-3.994288,0.0000811,loss,ns,0.0000261,0.0000225,1.16070493,0.246654959,pos,ns,0.001805801,0.006597641,0.273704088,0.784494308,pos,ns,0.105410203,-0.000175152,0.000226892,-0.771959944,0.44072623,neg,ns,0.683551236,Gm13469,Gm13469_Intergenic_downstream,2,46341344,46341393,46341392,46341393,50,+,TGCTCTCCAGCTTGATTAAAGATGTATTAAATTTGTTTAAATAAACCTCG,Distal Intergenic,2,46406220,46406569,350,2,Gm13469-201,65176,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,27,383690,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3817,cg21226777,-0.0000476,0.0000162,-2.92914716,0.003651022,loss,ns,0.000032,0.0000276,1.1605127,0.246733051,pos,ns,-0.017617997,0.008084105,-2.179338123,0.030059054,neg,ns,1.522024687,0.000327071,0.000278012,1.176466122,0.240311258,pos,ns,0.45865425,Adgrb3,Adgrb3_Exon,1,25504433,25504482,25504481,25504482,50,-,TGAATGCTGCAAGTGTCTGTACTCATTTGATATGCATCTTGCAAAGCTCG,"Exon (Adgrb3-206/Adgrb3, exon 8 of 29)",1,25067550,25826139,758590,2,Adgrb3-206,321657,Adgrb3-206;Adgrb3-205;Adgrb3-207;Adgrb3-201;Adgrb3-210,Adgrb3;Adgrb3;Adgrb3;Adgrb3;Adgrb3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,14,25,210933,ENSMUSG00000033569,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27187,cg20314575,0.0000263,0.0000044,5.977870677,6.21E-09,gain,yes,-0.00000867,0.00000748,-1.160304257,0.246817748,neg,ns,0.007706903,0.002190305,3.518643455,0.000498703,pos,ns,3.302157836,-0.00028243,0.0000753,-3.749511599,0.000211361,neg,ns,0.055787839,Mafb,Mafb_Exon,2,160365851,160365900,160365899,160365900,50,-,GCTGAATGAGCTGCGTCTTCTCATTCTCCAGGTGGTGCTTCTGCTGGACG,"Exon (Mafb-201/Mafb, exon 1 of 1)",2,160363703,160367065,3363,2,Mafb-201,1165,Mafb-201,Mafb,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,14,22,16658,ENSMUSG00000074622,conserved gene and region,2,160365864,160367635,1772,*,1772,185,0.687358917,0.886994873,0.104401806,2.50E-143,CpGisland,TRUE,U3,Pr-B
20293,cg10666730,0.0000541,0.00000507,10.66391022,7.98E-23,gain,yes,-0.00000999,0.00000861,-1.160295438,0.246821332,neg,ns,0.007372952,0.002523,2.922295292,0.003730079,pos,ns,2.428281968,-0.0000972,0.0000868,-1.120597163,0.263326743,neg,ns,0.11124475,Hoxc5,Hoxc5_Exon,15,102991052,102991101,102991052,102991053,50,+,CGAGGCGCTCCCCAGACAGTCCCTTTATGGGGCTCAGCAAGAGGCGAGCG,"Exon (Hoxc8-201/Hoxc8, exon 1 of 2)",15,102967443,103015676,48234,1,Hoxc5-202,23609,Hoxc5-202;Hoxc8-201;Hoxc8-202,Hoxc5;Hoxc8;Hoxc8,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,72,134,15424,ENSMUSG00000022485,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
13992,cg14729575,7.92E-08,0.00000269,0.029492913,0.976490449,gain,ns,0.0000053,0.00000456,1.160202439,0.246859128,pos,ns,0.002291488,0.001337116,1.71375439,0.087573481,pos,ns,1.057627388,-0.0000921,0.000046,-2.003355285,0.046009277,neg,ns,0.948941324,Gm13668,Gm13668_Intergenic_upstream,2,74070897,74070946,74070945,74070946,50,+,ATCATAATACCTGTGTATTGTAAAATCAATAGCCAAGTGCTATCTCAGCG,Distal Intergenic,2,73959669,73960669,1001,2,Gm13668-201,-110228,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,18,20,667729,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24962,cg24462233,-0.00000632,0.00000207,-3.046055818,0.002517799,loss,ns,0.00000409,0.00000352,1.15999872,0.246941935,pos,ns,-0.000374447,0.001032133,-0.362789752,0.717009176,neg,ns,0.144475287,0.0000777,0.0000355,2.188166535,0.029403633,pos,ns,0.962945812,Nop56,Nop56_Exon,2,130276781,130276830,130276781,130276782,50,+,CGCCAGAGCCTACACACTTACCTGCGCTCCAAGATGAGCCAAGTAGCCCC,"Exon (Nop56-202/Nop56, exon 7 of 12)",2,130274430,130279313,4884,1,Nop56-202,2351,Idh3b-201;Idh3b-204;Idh3b-205;Nop56-202;Nop56-212;Nop56-218;Nop56-204;Nop56-206;Nop56-205;Nop56-215;Nop56-210;Nop56-216;Nop56-219;Nop56-207;Nop56-217;Nop56-209;Nop56-213;Nop56-201;Nop56-211;Nop56-203;Nop56-214;Nop56-208,Idh3b;Idh3b;Idh3b;Nop56;Nop56;Nop56;Nop56;Nop56;Nop56;Nop56;Nop56;Nop56;Nop56;Nop56;Nop56;Nop56;Nop56;Nop56;Nop56;Nop56;Nop56;Nop56,0;0;0;0;0;0;0;2289;1950;985;0;0;0;0;0;0;-259;-327;-388;-392;-485;-881,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,67134,ENSMUSG00000027405,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
11102,cg17367986,-0.0000299,0.00000689,-4.335377025,0.0000197,loss,ns,0.0000136,0.0000117,1.159966879,0.24695488,pos,ns,0.005255063,0.003428239,1.532875409,0.12632643,pos,ns,0.898505779,-0.000546961,0.000117897,-4.639317013,0.00000516,neg,ns,0.815374498,Lingo1,Lingo1_Intergenic_downstream,9,56606211,56606260,56606211,56606212,50,-,CGCCTGTGAAATTAACATGATATCGAAAGCGTCAATGTTTATTTACTGGA,Distal Intergenic,9,56619088,56635628,16541,2,Lingo1-203,29417,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,25,235402,ENSMUSG00000049556,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23913,cg06676538,0.000056,0.0000115,4.879861979,0.0000017,gain,yes,0.0000226,0.0000195,1.159887923,0.24698698,pos,ns,0.007844673,0.005714795,1.372695464,0.170839274,pos,ns,0.767412282,0.0000888,0.000196531,0.451645808,0.65183998,pos,ns,0.199800652,Insig2,Insig2_Intron,1,121097415,121097464,121097415,121097416,50,+,CGATAATTTGTAAGCGCGATATGTTGTACTTGAGAGGATAAGATTAAATT,"Intron (Celrr-202/Celrr-202, intron 1 of 4)",1,121305893,121307318,1426,2,Insig2-206,209854,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,17,72999,ENSMUSG00000003721,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16184,cg11265498,0.00000598,0.00000572,1.045446429,0.296631181,gain,ns,-0.0000113,0.00000972,-1.159852289,0.247001468,neg,ns,0.00788775,0.00284648,2.771053473,0.00592498,pos,ns,2.227313103,-0.000269173,0.0000979,-2.749746815,0.006314269,neg,ns,0.161559777,Lhx1,Lhx1_Intergenic_upstream,11,84569513,84569562,84569513,84569514,50,-,CGTTTTCCTATTTGATGGGGAGTCAGATAAATGGCAGGCAGCTTGCTCTG,Distal Intergenic,11,84518284,84525535,7252,2,Lhx1-201,-44027,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,20,23,16869,ENSMUSG00000018698,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4601,cg22894390,0.00000322,0.00000166,1.936596591,0.053703246,gain,ns,-0.00000328,0.00000283,-1.159824673,0.247012697,neg,ns,0.0000653,0.000828058,0.078806701,0.937237219,pos,ns,0.028150473,0.00000399,0.0000285,0.139967562,0.888776514,pos,ns,0.957111139,Odf2,Odf2_Exon,2,29921052,29921101,29921052,29921053,50,+,CGCTGTGACAAAGAGAACAAGATCCTTAAAGATGAGATGAACAAAGAGAT,"Exon (Odf2-211/Odf2, exon 15 of 16)",2,29889720,29922539,32820,1,Odf2-211,31332,Odf2-211;Odf2-208;Odf2-205;Odf2-204;Odf2-225;Odf2-206;Odf2-203;Odf2-202;Odf2-201;Odf2-207;Odf2-210;Odf2-209;Odf2-222;Odf2-221,Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2,0;0;0;0;0;0;0;0;0;0;0;0;6658;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,8,18286,ENSMUSG00000026790,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11886,cg03866689,-0.000000986,0.000000689,-1.431107089,0.153406828,loss,ns,-0.00000136,0.00000117,-1.159744648,0.247045237,neg,ns,0.000140056,0.000342768,0.408603633,0.683112675,pos,ns,0.165507657,-0.0000148,0.0000118,-1.259250296,0.208887274,neg,ns,0.022240109,Kpna3,Kpna3_Exon,14,61439737,61439786,61439785,61439786,50,+,CCTTGTTCTTGAAGCTCTTGATGCGGTGGTTCTCCAAGCTGGGGTTCTCG,Promoter (<=1kb),14,61365211,61439874,74664,2,Kpna3-201,88,Kpna3-201,Kpna3,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,16648,ENSMUSG00000021929,conserved gene and region,14,61439275,61440356,1082,*,1082,142,0.742144177,0.953445943,0.131238447,3.06E-126,CpGisland,TRUE,U1,Pr-A
27155,cg06643163,0.0000119,0.00000897,1.321337495,0.187363249,gain,ns,-0.0000177,0.0000152,-1.15967766,0.247072479,neg,ns,0.005519707,0.004463922,1.236515207,0.217203112,pos,ns,0.663133957,-0.00000505,0.000153514,-0.032884735,0.973787669,neg,ns,0.838877087,Tnr,Tnr_Intron,1,159816317,159816366,159816317,159816318,50,+,CGTACAACTGCAATCATAGGTCATGCATGAATTATTAACCTCGGGGAGTT,"Intron (Tnr-202/Tnr, intron 2 of 22)",1,159523769,159931729,407961,1,Tnr-202,292548,Tnr-202;Tnr-201;Tnr-204,Tnr;Tnr;Tnr,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,13,21960,ENSMUSG00000015829,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19074,cg11474930,-0.00000737,0.00000436,-1.69168527,0.091710911,loss,ns,0.00000858,0.0000074,1.15964366,0.247086306,pos,ns,0.000756845,0.002167891,0.349115892,0.727239321,pos,ns,0.138322648,0.00000443,0.0000746,0.059409719,0.952664052,pos,ns,0.045512731,Neurod2,Neurod2_threeUTR,11,98325452,98325501,98325452,98325453,50,-,CGTCATTAAACTGAACAGAAACACGCAATGCACTTCGGGTGTCCGACGGG,3' UTR,11,98325415,98329648,4234,2,Neurod2-201,4147,Neurod2-201,Neurod2,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,22,18013,ENSMUSG00000038255,conserved gene and region,11,98325452,98325643,192,*,192,11,0.541666667,0.805184903,0.057291667,0.00000315,CpGisland,TRUE,U13,Hc-P
14769,cg14594184,-0.0000168,0.00000552,-3.044271073,0.002532343,loss,ns,-0.0000109,0.00000938,-1.159638408,0.247088442,neg,ns,-0.000213727,0.002747408,-0.077792234,0.938043511,neg,ns,0.027777017,-0.0000693,0.0000945,-0.733986289,0.46351186,neg,ns,0.856256442,Gm11146,Gm11146_Intron,16,77594019,77594068,77594067,77594068,50,-,ATGAAGAGTGGGCTGAACTTTGGGTCTAAACGAGACAATAGCTGCCTTCG,"Intron (Mir99ahg-207/Mir99ahg-207, intron 7 of 7)",16,77588578,77602094,13517,2,Gm11146-201,8026,Gm11146-201,Gm11146,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,21,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19871,cg25699220,0.000000212,0.00000137,0.154955962,0.876956877,gain,ns,0.00000269,0.00000232,1.159507613,0.24714164,pos,ns,0.001928002,0.000679489,2.837429712,0.004847545,pos,ns,2.314478183,-0.000029,0.0000234,-1.239821861,0.215978981,neg,ns,0.967790421,Zmym3,Zmym3_Exon,X,101414420,101414469,101414468,101414469,50,+,ACCTGGAACTTGGTCCAGCAGCTGGGGCTGCAGAACTGGTAGACTGTGCG,"Exon (Zmym3-203/Zmym3, exon 9 of 24)",20,101404384,101419798,15415,2,Zmym3-203,5329,Zmym3-203;Zmym3-209;Zmym3-206;Zmym3-201;Zmym3-218;Zmym3-212;Zmym3-214;Zmym3-210;Zmym3-215;Zmym3-207;Zmym3-202;Zmym3-208;Zmym3-204;Zmym3-205;Zmym3-211;Zmym3-217;Zmym3-216;Zmym3-213,Zmym3;Zmym3;Zmym3;Zmym3;Zmym3;Zmym3;Zmym3;Zmym3;Zmym3;Zmym3;Zmym3;Zmym3;Zmym3;Zmym3;Zmym3;Zmym3;Zmym3;Zmym3,0;0;0;0;-4686;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,7,56364,ENSMUSG00000031310,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20249,cg14448621,0.00000183,0.00000506,0.362193171,0.717454462,gain,ns,-0.00000996,0.00000859,-1.159455061,0.247163016,neg,ns,-0.009153486,0.0025167,-3.637099086,0.000322802,neg,ns,3.491063751,0.000310982,0.0000865,3.593131018,0.000379875,pos,ns,0.08382887,Hoxc10,Hoxc10_Exon,15,102970927,102970976,102970927,102970928,50,+,CGCGAGAGCGCCGCCTGGAGATTAGCAAGACCATTAACCTTACAGACAGA,"Exon (Hoxc10-201/Hoxc10, exon 2 of 2)",15,102966796,102971893,5098,1,Hoxc10-201,4131,Hoxc10-201;Hoxc5-202,Hoxc10;Hoxc5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,21,209448,ENSMUSG00000022484,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
11449,cg11461434,-0.0000147,0.0000106,-1.383175327,0.167606466,loss,ns,0.000021,0.0000181,1.159097752,0.247308394,pos,ns,-0.003332533,0.005299728,-0.628812103,0.529935129,neg,ns,0.27577729,0.0000692,0.000182257,0.379417579,0.704637568,pos,ns,0.74870754,Gm14647,Gm14647_Intergenic_downstream,X,58312710,58312759,58312758,58312759,50,+,TACCTAGGCACAACTGGGTGCCGCTTTAATGACTTTCCAAATGCACCCCG,Distal Intergenic,20,58225079,58225758,680,1,Gm14647-201,87631,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,3,100418408,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24124,cg18346262,0.0000698,0.0000158,4.417779401,0.0000138,gain,ns,-0.0000311,0.0000269,-1.158939037,0.247372989,neg,ns,0.015469536,0.007867517,1.966253792,0.050161309,pos,ns,1.299631139,-0.000522116,0.000270563,-1.92973575,0.054551864,neg,ns,0.206358046,Anapc5,Anapc5_Exon,5,122800654,122800703,122800654,122800655,50,-,CGACCCAAGATAGAGATTACATGACAGAATTTGTTTTGCTCTTCAGAAAT,"Exon (Anapc5-207/Anapc5, exon 9 of 9)",5,122787459,122821339,33881,2,Anapc5-201,20636,Anapc5-201;Anapc5-202;Anapc5-203;Anapc5-208;Anapc5-205;Anapc5-212;Anapc5-218;Anapc5-209;Anapc5-204;Anapc5-215;Anapc5-217;Anapc5-216;Anapc5-207,Anapc5;Anapc5;Anapc5;Anapc5;Anapc5;Anapc5;Anapc5;Anapc5;Anapc5;Anapc5;Anapc5;Anapc5;Anapc5,0;0;0;0;0;0;0;-924;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,6,59008,ENSMUSG00000029472,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19243,cg25034090,-0.00000939,0.00000464,-2.023788594,0.043849445,loss,ns,-0.00000913,0.00000788,-1.158922939,0.247379541,neg,ns,-0.004234565,0.002308561,-1.834287436,0.067569667,neg,ns,1.170248225,-0.000132246,0.0000794,-1.665744953,0.096774372,neg,ns,0.844690774,Kmt2d,Kmt2d_threeUTR,15,98834070,98834119,98834070,98834071,50,-,CGGCCTTTGGGATTGTCAAGCTTAGTCAAGTCTCTTTGCAGCCGTGAGTT,3' UTR,15,98831669,98871183,39515,2,Kmt2d-202,37064,Kmt2d-202;Kmt2d-201;Kmt2d-204;Prkag1-201;Prkag1-206;Prkag1-203;Prkag1-205,Kmt2d;Kmt2d;Kmt2d;Prkag1;Prkag1;Prkag1;Prkag1,0;0;0;-2549;-3099;-2616;-2582,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,16,381022,ENSMUSG00000048154,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19872,cg11729256,-0.00000187,0.00000236,-0.79262466,0.428602703,loss,ns,-0.00000464,0.000004,-1.158841019,0.247412887,neg,ns,-0.001119209,0.0011723,-0.954712154,0.34046715,neg,ns,0.467924785,-0.000019,0.0000403,-0.470682467,0.638198513,neg,ns,0.966679766,Zmym3,Zmym3_Exon,X,101414462,101414511,101414510,101414511,50,-,ACTGTGCGGTCAACCTTGTTGTAGTAACAGGGGTCAGAGAGGCTGCGGCG,"Exon (Zmym3-203/Zmym3, exon 9 of 24)",20,101404384,101419798,15415,2,Zmym3-203,5287,Zmym3-203;Zmym3-209;Zmym3-206;Zmym3-201;Zmym3-218;Zmym3-212;Zmym3-214;Zmym3-210;Zmym3-215;Zmym3-207;Zmym3-202;Zmym3-208;Zmym3-204;Zmym3-205;Zmym3-211;Zmym3-217;Zmym3-216;Zmym3-213,Zmym3;Zmym3;Zmym3;Zmym3;Zmym3;Zmym3;Zmym3;Zmym3;Zmym3;Zmym3;Zmym3;Zmym3;Zmym3;Zmym3;Zmym3;Zmym3;Zmym3;Zmym3,0;0;0;0;-4728;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,7,56364,ENSMUSG00000031310,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9637,cg18242712,0.00000233,0.00000215,1.087532521,0.277646358,gain,ns,0.00000422,0.00000364,1.158663527,0.247485147,pos,ns,-0.000415649,0.00106775,-0.389275128,0.697339902,neg,ns,0.156555484,0.0000267,0.0000367,0.726402474,0.468140187,pos,ns,0.059777773,Dbx1,Dbx1_Promoter,7,49637152,49637201,49637152,49637153,50,+,CGGGCTAATTAAATGCCTATTTAGAAGTTTCAGATGACATCTTGCCTCAT,Promoter (<=1kb),7,49631499,49636849,5351,2,Dbx1-201,-303,Dbx1-201,Dbx1,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,8,18,13172,ENSMUSG00000030507,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
26567,cg00925802,0.0000742,0.0000122,6.087732864,3.38E-09,gain,yes,0.000024,0.0000207,1.158636997,0.247495948,pos,ns,0.01812128,0.006063537,2.988565901,0.003026998,pos,ns,2.518987916,-0.000198184,0.000208525,-0.950410022,0.342644324,neg,ns,0.494041348,Casz1,Casz1_Intron,4,148922025,148922074,148922073,148922074,50,-,GAAAACAATTTAATAAAGGACAGACACACTTTGAAAACAGATTGGGCCCG,"Intron (Casz1-201/Casz1, intron 4 of 15)",4,148804429,148945129,140701,1,Casz1-201,117596,Casz1-201;Casz1-202;Casz1-206,Casz1;Casz1;Casz1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,94,124,69743,ENSMUSG00000028977,mapped to different genes,4,148922073,148922173,101,*,101,10,0.673267327,0.956439394,0.099009901,6.91E-08,CpGisland,TRUE,NA,NRS
3391,cg20130684,-0.00000168,0.00000111,-1.516328834,0.130455247,loss,ns,-0.00000218,0.00000188,-1.158634593,0.247496927,neg,ns,0.0000358,0.000551011,0.064927213,0.948273802,pos,ns,0.023066247,-0.0000026,0.0000189,-0.137151322,0.891000219,neg,ns,0.0288518,Bcl6,Bcl6_fiveUTR,16,23988609,23988658,23988657,23988658,50,-,CACCACTTCTAAGAACCCCAGTTCTAAGAATCAACAGAGCTCAATTCTCG,Promoter (<=1kb),16,23965052,23988852,23801,2,Bcl6-201,194,Bcl6-201;Gm37419-201,Bcl6;Gm37419,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,TRUE,FALSE,fiveUTR,4,18,12053,ENSMUSG00000022508,conserved gene and region,16,23988657,23989142,486,*,486,53,0.639917696,1.065348664,0.109053498,1.22E-42,CpGisland,TRUE,U1,Pr-A
23548,cg01663261,0.00000232,0.00000656,0.353397613,0.724030578,gain,ns,0.0000129,0.0000111,1.158490831,0.247555468,pos,ns,0.008956942,0.003263248,2.744793654,0.006408018,pos,ns,2.193276257,-0.00018883,0.000112223,-1.682636511,0.093452337,neg,ns,0.119397041,Sp8,Sp8_Promoter,12,118843938,118843987,118843938,118843939,50,-,CGAAGAAACAGAGAAATTAATCTGGGAGACTATCCATCATCACCGGTAAT,Promoter (2-3kb),12,118846329,118852576,6248,1,Sp8-201,-2391,Sp8-201;Sp8-202,Sp8;Sp8,0;-3599,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,27,29,320145,ENSMUSG00000048562,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
9766,cg25249632,0.0000188,0.0000114,1.651383096,0.099672964,gain,ns,-0.0000224,0.0000193,-1.158475075,0.247561884,neg,ns,0.010310035,0.005657881,1.822242944,0.069381484,pos,ns,1.158756415,-0.000298646,0.000194574,-1.534870759,0.125835522,neg,ns,0.372627043,Ascc3,Ascc3_Intron,10,50763636,50763685,50763636,50763637,50,-,CGCTGGCTTTCTCAGTACGCTTCTGGCTATTAGAATCATTAAACAACTCA,"Intron (Ascc3-201/Ascc3, intron 34 of 41)",10,50592669,50851485,258817,1,Ascc3-201,170967,Ascc3-201;Ascc3-205;Ascc3-202;Gm18120-201,Ascc3;Ascc3;Ascc3;Gm18120,0;0;0;5452,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,6,77987,ENSMUSG00000038774,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
5721,cg09403176,-0.00000547,0.00000321,-1.70518282,0.089162108,loss,ns,-0.00000631,0.00000544,-1.158459084,0.247568396,neg,ns,-0.003950104,0.001595162,-2.476302402,0.013808655,neg,ns,1.859848621,0.0000147,0.0000549,0.26760978,0.789177662,pos,ns,0.90824168,Add1,Add1_Exon,5,34616867,34616916,34616867,34616868,50,-,CGTCCGGTGTCTGCGTGCCAAGCTGTATTACCAACTGCTTGGTCTGTGCC,"Exon (Add1-201/Add1, exon 10 of 16)",5,34573664,34632308,58645,1,Add1-204,43203,Add1-204;Add1-201;Add1-205;Add1-203;Add1-202;Add1-206;Add1-209;Add1-215;Add1-213;Add1-207;Add1-208,Add1;Add1;Add1;Add1;Add1;Add1;Add1;Add1;Add1;Add1;Add1,0;0;0;0;0;0;0;0;-2438;-2933;-3055,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,6,11518,ENSMUSG00000029106,conserved gene and region,5,34616676,34616881,206,*,206,15,0.572815534,0.894097222,0.072815534,9.91E-10,CpGisland,TRUE,U10,Tr-S
22136,cg05400549,-0.0000529,0.0000269,-1.966113982,0.050177533,loss,ns,0.0000529,0.0000457,1.158444987,0.247574137,pos,ns,-0.022670399,0.013387476,-1.693403541,0.09138321,neg,ns,1.039133591,0.000964426,0.000460394,2.094782491,0.037001726,pos,ns,0.705492786,Grm7,Grm7_threeUTR,6,111358913,111358962,111358961,111358962,50,-,TATAGCATTCTTCTCATGGTCACATGTACTGTGTATGCCATCAAGACTCG,3' UTR,6,110645581,111497090,851510,1,Grm7-204,713332,Grm7-204;Grm7-201;Grm7-202,Grm7;Grm7;Grm7,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,6,108073,ENSMUSG00000056755,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9703,cg01883716,0.00006,0.00000732,8.193779013,6.73E-15,gain,yes,-0.0000144,0.0000124,-1.158363671,0.247607256,neg,ns,0.005212698,0.003644031,1.430475891,0.153587651,pos,ns,0.813643703,-0.0000482,0.000125318,-0.384532995,0.700847101,neg,ns,0.090669621,Gm7481,Gm7481_Exon,12,50120687,50120736,50120735,50120736,50,-,TGCTAAAGAAAGCGTCAACCCATTAAGGTAATTATATGGAACCTGTGCCG,"Exon (Gm40418-201/Gm40418-201, exon 1 of 3)",12,49840757,49841751,995,2,Gm7481-201,-278985,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,37,665077,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14679,cg00091964,0.0000152,0.0000029,5.251675462,0.000000281,gain,yes,-0.00000571,0.00000493,-1.158184353,0.247680299,neg,ns,0.003690126,0.001443797,2.555848792,0.011069726,pos,ns,1.955863122,-0.000108672,0.0000497,-2.188671048,0.029366554,neg,ns,0.035555331,Ctnna2,Ctnna2_Exon,6,77243566,77243615,77243614,77243615,50,+,ATTTCCTGCTGCTCGGTCTCTGTCTATACTGGCTGCTGAGGAGGCCCTCG,"Exon (Lrrtm1-201/Lrrtm1, exon 2 of 3)",6,76881637,77979699,1098063,2,Ctnna2-204,736084,Ctnna2-204;Ctnna2-205;Ctnna2-202;Ctnna2-201;Lrrtm1-201;Lrrtm1-202;Lrrtm1-203;Lrrtm1-204,Ctnna2;Ctnna2;Ctnna2;Ctnna2;Lrrtm1;Lrrtm1;Lrrtm1;Lrrtm1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,16,24,12386,ENSMUSG00000063063,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
3501,cg02502477,-0.0000735,0.0000114,-6.438674904,4.58E-10,loss,yes,0.0000225,0.0000194,1.158137521,0.247699378,pos,ns,-0.009666835,0.005684303,-1.700619182,0.090017387,neg,ns,1.0456736,0.000158671,0.000195483,0.811689187,0.417592801,pos,ns,0.88955475,Bcl11a,Bcl11a_Intergenic_downstream,11,24184750,24184799,24184798,24184799,50,+,TATCAGAAGTTGGCCTATGCCTTATGCACAATGTACTTAAAACGAGGGCG,Distal Intergenic,11,24142379,24163291,20913,1,Bcl11a-206,42371,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,15,98,14025,ENSMUSG00000000861,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18113,cg27009690,0.00010162,0.0000121,8.41662293,1.45E-15,gain,yes,-0.0000238,0.0000205,-1.157971991,0.247766822,neg,ns,-0.018892301,0.006009189,-3.143902139,0.001828518,neg,ns,2.73790077,0.000731369,0.000206655,3.539075369,0.00046304,pos,ns,0.607286041,Magi1,Magi1_fiveUTR,6,93913588,93913637,93913636,93913637,50,+,CTGGCGACATTTCTAACACATGACAACAATTTCCATCTGTATTTAAGCCG,5' UTR,6,93675455,94283322,607868,2,Magi1-201,369685,Magi1-201;Magi1-202;Magi1-208;Magi1-203;Magi1-206;Magi1-209;Magi1-205;Magi1-211;Magi1-207,Magi1;Magi1;Magi1;Magi1;Magi1;Magi1;Magi1;Magi1;Magi1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,8,18,14924,ENSMUSG00000045095,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15865,cg26722693,0.0000181,0.00000396,4.573920462,0.00000693,gain,ns,-0.00000779,0.00000673,-1.157810049,0.247832817,neg,ns,-0.000543998,0.001970999,-0.276001339,0.782730939,neg,ns,0.106387499,0.000188989,0.0000678,2.788166349,0.005628198,pos,ns,0.106696537,Gm6411,Gm6411_Intron,13,83732191,83732240,83732191,83732192,50,+,CGAGACATTTCTAATTTGTTCCGTCTGTCAGGAGGGGACTATGAGAGGTT,"Intron (C130071C03Rik-201/C130071C03Rik-201, intron 1 of 3)",13,83761132,83762335,1204,2,Gm6411-201,30095,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,36,623241,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
6901,cg04616606,-0.000000394,0.00000402,-0.097791258,0.922161246,loss,ns,-0.00000792,0.00000684,-1.157807326,0.247833926,neg,ns,0.002490865,0.002002915,1.24362034,0.214578945,pos,ns,0.668412893,-0.0000631,0.0000689,-0.915406851,0.36068959,neg,ns,0.921328834,Mkrn1,Mkrn1_threeUTR,6,39401204,39401253,39401252,39401253,50,+,TCTCACTTTATGATCTTGCTCTCAAATTGCTTAGCACTCCTCCACTTGCG,3' UTR,6,39397804,39419776,21973,2,Mkrn1-204,18523,Mkrn1-204;Mkrn1-201;Mkrn1-208;Mkrn1-206;Mkrn1-202;Mkrn1-205;Mkrn1-207;Mkrn1-203,Mkrn1;Mkrn1;Mkrn1;Mkrn1;Mkrn1;Mkrn1;Mkrn1;Mkrn1,0;0;0;0;0;3828;18504;19045,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,1,54484,ENSMUSG00000029922,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27783,cg11318267,0.000130974,0.0000146,8.964315495,3.01E-17,gain,yes,-0.0000287,0.0000248,-1.157280403,0.248048744,neg,ns,0.012234942,0.007271824,1.682513542,0.093476185,pos,ns,1.029299021,-0.000128621,0.000250077,-0.514322825,0.607392761,neg,ns,0.393796308,Gm3809,Gm3809_Intergenic_upstream,1,186922958,186923007,186922958,186922959,50,-,CGGAATCCATTATCATCACAATGGAGGAGCTGTGGGTTCGGCTGACTTGA,Distal Intergenic,1,186960508,186961513,1006,1,Gm3809-201,-37550,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,8,100042375,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5051,cg15894685,-0.00000964,0.00000278,-3.465278738,0.000604362,loss,ns,-0.00000547,0.00000473,-1.157240994,0.248064816,neg,ns,-0.000305139,0.001385077,-0.220304707,0.825778867,neg,ns,0.083136236,-0.0000371,0.0000476,-0.777938269,0.437198722,neg,ns,0.943881734,Galnt15,Galnt15_Exon,14,32052352,32052401,32052352,32052353,50,+,CGGACATTCCACTGGTTTCTGGCTAATGTCTACCCTGAGCTGTACCCATC,"Exon (Galnt15-201/Galnt15, exon 7 of 10)",14,32028989,32062197,33209,1,Galnt15-201,23363,Galnt15-201;Galnt15-202,Galnt15;Galnt15,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,78754,ENSMUSG00000021903,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
593,cg09908110,0.000240234,0.0000155,15.48723469,1.81E-40,gain,yes,0.0000305,0.0000264,1.157230489,0.2480691,pos,ns,0.013868085,0.007720348,1.796303172,0.073419839,pos,ns,1.134186572,0.00037442,0.000265502,1.410234096,0.159473139,pos,ns,0.51436016,Macrod1,Macrod1_Intron,19,7143788,7143837,7143788,7143789,50,+,CGCCAGATTACTCCAAATGCATTTATTACAGGGGTTAGAAGCGGGGGACT,"Intron (Macrod1-201/Macrod1, intron 3 of 10)",19,7056810,7198057,141248,1,Macrod1-201,86978,Macrod1-201,Macrod1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,11,107227,ENSMUSG00000036278,conserved gene and region,19,7143705,7143789,85,*,85,8,0.611764706,1.011904762,0.094117647,0.00000348,CpGisland,TRUE,NA,NRS
20791,cg10774906,-0.00000695,0.0000147,-0.473299783,0.636332425,loss,ns,-0.0000288,0.0000249,-1.157092844,0.24812524,neg,ns,-0.009457927,0.007304268,-1.294849461,0.19633573,neg,ns,0.707000658,0.00000673,0.000251193,0.026810894,0.978627815,pos,ns,0.661744054,Them7,Them7_Intron,2,105317933,105317982,105317933,105317934,50,+,CGAGGGTAGATGACCTCATTAACTTGCAGCTTGTACACAATTCAATTACT,"Intron (Them7-201/Them7, intron 3 of 3)",2,105224320,105379796,155477,1,Them7-201,93613,Them7-201;Them7-202,Them7;Them7,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,7,74088,ENSMUSG00000055312,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14424,cg07571117,-0.00000197,0.000000836,-2.360104573,0.018889037,loss,ns,0.00000164,0.00000142,1.156952574,0.248182461,pos,ns,0.000268713,0.000416225,0.64559712,0.519017865,pos,ns,0.284817693,0.00000131,0.0000143,0.091713595,0.926984831,pos,ns,0.024715331,Fam98a,Fam98a_fiveUTR,17,75551773,75551822,75551821,75551822,50,+,CTCCATGAGGTCACACTCCATGCTACTGTGGTATTCAAATTTCCGAGTCG,Promoter (<=1kb),17,75544467,75551796,7330,2,Fam98a-203,0,Fam98a-201;Fam98a-204;Fam98a-205;Fam98a-203,Fam98a;Fam98a;Fam98a;Fam98a,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,6,72722,ENSMUSG00000002017,conserved gene and region,17,75551816,75552006,191,*,191,22,0.659685864,1.086068752,0.115183246,1.61E-18,CpGisland,TRUE,U2,Pr-W
20853,cg07448535,-0.0000194,0.0000102,-1.90365671,0.057880808,loss,ns,0.00002,0.0000173,1.156950986,0.248183108,pos,ns,0.00536748,0.005070085,1.058656701,0.290580353,pos,ns,0.536733752,-0.000323213,0.00017436,-1.853713605,0.064729979,neg,ns,0.716276686,Ctcf,Ctcf_Exon,8,105664921,105664970,105664921,105664922,50,-,CGTCACATGAAAAGCCACACTGATGAGAGACCACACAAGTGCCATCTCTG,"Exon (Ctcf-201/Ctcf, exon 4 of 12)",8,105636568,105681647,45080,1,Ctcf-204,28353,Ctcf-204;Ctcf-201;Ctcf-202;Ctcf-203;Gm5915-201,Ctcf;Ctcf;Ctcf;Ctcf;Gm5915,0;0;0;0;-4134,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,8,13018,ENSMUSG00000005698,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13136,cg08517780,0.0000635,0.0000119,5.34538076,0.000000175,gain,yes,-0.0000234,0.0000202,-1.156839234,0.248228702,neg,ns,0.02112726,0.005915353,3.571597653,0.000411165,pos,ns,3.38598372,-0.000437874,0.000203428,-2.152471858,0.032131794,neg,ns,0.254724317,Dnah2,Dnah2_Promoter,11,69553125,69553174,69553173,69553174,50,-,AGTGACGGTTGCCAAGTCCCTGAGGCTGATAGCCAGCGATGGGGCTGTCG,Promoter (4-5kb),11,69510666,69549110,38445,2,Dnah2-203,-4064,Dnah2-202;Dnah2-203;Efnb3-201,Dnah2;Dnah2;Efnb3,0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,7,10,327954,ENSMUSG00000005237,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23350,cg10906042,0.000000665,0.000003,0.221902574,0.824535837,gain,ns,-0.00000589,0.00000509,-1.156810247,0.248240529,neg,ns,0.001286224,0.001491514,0.862361523,0.389155218,pos,ns,0.409877142,-0.00000236,0.0000513,-0.04603681,0.963310553,neg,ns,0.938528574,Fbxw8,Fbxw8_Intron,5,118108770,118108819,118108770,118108771,50,-,CGTGCAACACAATTAGTGGTAAAATCAAACTGGAGGATGGCCAGTGCTGA,"Intron (Fbxw8-201/Fbxw8, intron 5 of 10)",5,118064965,118155464,90500,2,Fbxw8-201,46645,Fbxw8-201;Fbxw8-202,Fbxw8;Fbxw8,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,231672,ENSMUSG00000032867,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23079,cg04603482,0.0000661,0.000012,5.49805646,8.03E-08,gain,yes,-0.0000236,0.0000204,-1.156782246,0.248251955,neg,ns,0.02711874,0.005979441,4.535330601,0.00000823,pos,ns,5.084594154,-0.000751976,0.000205632,-3.656892321,0.000299834,neg,ns,0.439751659,Rnf220,Rnf220_Intron,4,117281300,117281349,117281300,117281301,50,-,CGCTGAACAGTTGACAATGCAATTATCCAGTGTGGAGGCAGGGAGTTGGC,"Intron (Rnf220-201/Rnf220, intron 8 of 14)",4,117271463,117497052,225590,2,Rnf220-201,215703,Rnf220-201;Rnf220-203;Rnf220-212;Rnf220-202;Rnf220-205;Rnf220-209;Rnf220-213;Rnf220-210;Rnf220-206;Rnf220-208,Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,4,117281349,117281438,90,*,90,8,0.555555556,1.18226601,0.088888889,0.00000534,CpGisland,TRUE,NA,NRS
20778,cg06554634,-0.00000543,0.00000162,-3.361308937,0.000872853,loss,ns,0.00000317,0.00000274,1.156777792,0.248253772,pos,ns,0.001031117,0.000804088,1.282343377,0.200680297,pos,ns,0.697495265,-0.0000333,0.0000277,-1.203356246,0.229756644,neg,ns,0.038763102,Rbm26,Rbm26_Exon,14,105176789,105176838,105176789,105176790,50,-,CGAGAGTCTTGCTGAGCCAGGACTTGAGTGCCTCGAAGTTTTCAATGATC,Promoter (<=1kb),14,105114965,105176860,61896,2,Rbm26-204,22,Rbm26-204;Rbm26-202;Rbm26-201;Rbm26-203,Rbm26;Rbm26;Rbm26;Rbm26,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,74213,ENSMUSG00000022119,conserved gene and region,14,105176671,105177159,489,*,489,61,0.734151329,0.943358634,0.124744376,5.37E-53,CpGisland,TRUE,U1,Pr-A
7883,cg17647942,0.00000772,0.00000434,1.779058577,0.076209942,gain,ns,-0.00000852,0.00000737,-1.156474193,0.248377676,neg,ns,0.001986379,0.00215951,0.919828689,0.35837748,pos,ns,0.445659289,-0.000246206,0.0000743,-3.315217966,0.001024382,neg,ns,0.795845922,Runx2,Runx2_threeUTR,17,44608121,44608170,44608121,44608122,50,-,CGAAGTGCCATAGTAGAGATATGGAGTGCTGCTGGTCTGGAAGGGTCCAC,3' UTR,17,44495987,44736176,240190,2,Runx2-212,128006,Runx2-212;Runx2-214;Runx2-203;Runx2-202;Runx2-213;Runx2-204;Runx2-210;Runx2-211;Runx2-207;Runx2-201;Runx2-209,Runx2;Runx2;Runx2;Runx2;Runx2;Runx2;Runx2;Runx2;Runx2;Runx2;Runx2,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,10,20,12393,ENSMUSG00000039153,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19222,cg00014011,0.0000806,0.0000192,4.193045925,0.000036,gain,ns,-0.0000378,0.0000327,-1.15631472,0.248442777,neg,ns,-0.006432703,0.009568276,-0.672294881,0.501896753,neg,ns,0.299385614,0.000694482,0.000329052,2.110551941,0.035611534,pos,ns,0.488196306,Wnt1,Wnt1_Intergenic_downstream,15,98798353,98798402,98798353,98798354,50,+,CGGAGCCCTGGTGGGGTAGGAGACACTAAGCCTGTATTTATTACTCTCCC,Distal Intergenic,15,98789857,98793837,3981,1,Wnt1-201,8496,Wnt1-201,Wnt1,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,12,22408,ENSMUSG00000022997,conserved gene and region,15,98798040,98798354,315,*,315,21,0.666666667,0.6125,0.066666667,1.17E-12,CpGisland,TRUE,U13,Hc-P
18882,cg02620401,-0.0000853,0.0000109,-7.838686343,7.37E-14,loss,yes,0.0000214,0.0000185,1.15621416,0.248483834,pos,ns,-0.007815807,0.005418489,-1.44243284,0.150189872,neg,ns,0.823359354,0.000187275,0.000186341,1.005008643,0.315676504,pos,ns,0.632530907,Pde4dip,Pde4dip_Exon,3,97824261,97824310,97824261,97824262,50,-,CGCTCCTCCAGGAAGTAGATGCGCAGCTTGAGGCTGAAGTTCTCCTTCTT,"Exon (Pde4dip-205/Pde4dip, exon 4 of 46)",3,97689824,97888707,198884,2,Pde4dip-205,64397,Pde4dip-205;Pde4dip-202;Pde4dip-203;Pde4dip-209;Pde4dip-204,Pde4dip;Pde4dip;Pde4dip;Pde4dip;Pde4dip,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,83679,ENSMUSG00000038170,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U4,Pr-F
26355,cg23577036,0.0000368,0.00000436,8.440949675,1.22E-15,gain,yes,-0.00000856,0.0000074,-1.156099818,0.248530524,neg,ns,0.006712278,0.00216837,3.095540982,0.002143874,pos,ns,2.668800665,-0.000133962,0.0000746,-1.796459684,0.073394906,neg,ns,0.876371537,Kiz,Kiz_Intron,2,146958548,146958597,146958596,146958597,50,+,TAATTGGTTTGCAGTTGTTTACATGAGTATTAAGGCCTTCTTTTCAGCCG,"Intron (Kiz-201/Kiz, intron 12 of 13)",2,146855864,146970097,114234,1,Kiz-201,102684,Kiz-201;Kiz-202,Kiz;Kiz,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,29,228730,ENSMUSG00000074749,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27950,cg01996056,0.0000268,0.00000259,10.33414425,1.05E-21,gain,yes,0.0000051,0.00000441,1.156077869,0.248539488,pos,ns,0.005346795,0.001291449,4.140152667,0.0000448,pos,ns,4.348866805,0.0000156,0.0000444,0.352168533,0.724951161,pos,ns,0.07711403,Vash2,Vash2_fiveUTR,1,190979196,190979245,190979244,190979245,50,+,CCATGTCCCATTCTCGAATGTTATTCTGTGACATATAACCAAGTCACCCG,Promoter (<=1kb),1,190972902,190979214,6313,2,Vash2-203,0,Vash2-202;Vash2-201;Vash2-203,Vash2;Vash2;Vash2,0;-194;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,1,226841,ENSMUSG00000037568,conserved gene and region,1,190978840,190979509,670,*,670,66,0.680597015,0.851694915,0.098507463,8.73E-50,CpGisland,TRUE,U3,Pr-B
3905,cg04901692,-0.00000536,0.00000241,-2.227048269,0.026661991,loss,ns,0.00000473,0.00000409,1.156058337,0.248547464,pos,ns,0.000875224,0.001198552,0.730234328,0.465798436,pos,ns,0.331801974,-0.0000606,0.0000412,-1.470469875,0.142448781,neg,ns,0.951723431,5730522E02Rik,5730522E02Rik_Intron,11,25732749,25732798,25732749,25732750,50,-,CGATTGTGGGTCATTACACAATCATTTAAAGGGCATTAATGAGAACCATT,"Intron (5730522E02Rik-202/5730522E02Rik, intron 2 of 5)",11,25617668,26210569,592902,2,5730522E02Rik-202,477771,5730522E02Rik-202;5730522E02Rik-201;5730522E02Rik-208,5730522E02Rik;5730522E02Rik;5730522E02Rik,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,90,70626,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12095,cg04557744,0.00000318,0.00000584,0.544834141,0.586259323,gain,ns,-0.0000115,0.00000991,-1.156048334,0.248551549,neg,ns,-0.00368761,0.002904309,-1.269702829,0.2051428,neg,ns,0.687943721,-0.0000109,0.0000999,-0.109424386,0.912936691,neg,ns,0.867113833,Efna5,Efna5_Intron,17,62829153,62829202,62829201,62829202,50,-,AGAAATAATAACTCACAAGCAATGAATTCAAAAAGATTAGATCTTTGCCG,"Intron (Efna5-201/Efna5, intron 1 of 4)",17,62604184,62881317,277134,2,Efna5-201,52115,Efna5-201;Efna5-202,Efna5;Efna5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,21,13640,ENSMUSG00000048915,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7838,cg19850445,-0.00000211,0.00000317,-0.664128017,0.507102033,loss,ns,-0.00000623,0.00000539,-1.155988788,0.248575868,neg,ns,0.003856915,0.001578876,2.442822849,0.015130877,pos,ns,1.820135907,-0.000195593,0.0000543,-3.602247416,0.000367315,neg,ns,0.905742623,Bcl9l,Bcl9l_Exon,9,44500948,44500997,44500948,44500949,50,-,CGGGGAACCATGGGGCCAAGGCCAACCAGATCTCGCCTAGCAACTCAAGT,"Exon (Bcl9l-206/Bcl9l, exon 2 of 8)",9,44482825,44510422,27598,1,Bcl9l-206,18123,Bcl9l-206;Bcl9l-202;Bcl9l-203;Bcl9l-205;Bcl9l-201;Bcl9l-204,Bcl9l;Bcl9l;Bcl9l;Bcl9l;Bcl9l;Bcl9l,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,Exon,1,9,80288,ENSMUSG00000063382,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8640,cg11692953,0.000108641,0.0000156,6.969460034,1.92E-11,gain,yes,-0.0000306,0.0000265,-1.155973469,0.248582125,neg,ns,0.028589968,0.007758382,3.685042535,0.000269805,pos,ns,3.568949825,-0.000557006,0.00026681,-2.087650447,0.037645562,neg,ns,0.449713574,Btrc,Btrc_Intron,19,45476253,45476302,45476301,45476302,50,-,ACTGCTAACGCTCAGAGATCGGCAGGAGTCCTACTTGCCTAATCTTACCG,"Intron (Btrc-204/Btrc, intron 1 of 2)",19,45363734,45507736,144003,1,Btrc-204,112519,Btrc-204;Btrc-201;Btrc-210;Btrc-202;Btrc-203;Btrc-209,Btrc;Btrc;Btrc;Btrc;Btrc;Btrc,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,63,98,12234,ENSMUSG00000025217,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
10302,cg01823853,0.0000534,0.0000233,2.292929583,0.022521362,gain,ns,-0.0000458,0.0000396,-1.155958207,0.248588358,neg,ns,0.025321928,0.011601886,2.182569907,0.029817677,pos,ns,1.525526193,-0.000868598,0.000398988,-2.1770036,0.030234464,neg,ns,0.419740058,Hibadh,Hibadh_Intron,6,52601950,52601999,52601950,52601951,50,+,CGCCAGCTGATAAACAAACAATTTAAGTCAAGAGCTGGAGAATTCCCAGC,"Intron (Hibadh-201/Hibadh, intron 4 of 7)",6,52546228,52640389,94162,2,Hibadh-201,38390,Hibadh-201;Hibadh-203,Hibadh;Hibadh,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,13,58875,ENSMUSG00000029776,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
11423,cg11011487,0.000066,0.00000802,8.226033355,5.40E-15,gain,yes,-0.0000157,0.0000136,-1.155893037,0.248614976,neg,ns,-0.004587254,0.003991085,-1.149375151,0.251287308,neg,ns,0.599829446,-0.000107744,0.000137253,-0.784999231,0.433053517,neg,ns,0.669704215,Ccdc33,Ccdc33_Intron,9,58065646,58065695,58065646,58065647,50,-,CGCCAGCTGGAAGGAAAGGGATTAATTCTGCACTTAGCACAGCTCCGGTG,"Intron (Stra6-210/Stra6, intron 1 of 4)",9,58028677,58102297,73621,2,Ccdc33-201,36602,Ccdc33-201;Ccdc33-203;Ccdc33-210;Ccdc33-204;Ccdc33-208;Stra6-210,Ccdc33;Ccdc33;Ccdc33;Ccdc33;Ccdc33;Stra6,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,8,382077,ENSMUSG00000037716,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6572,cg13125030,0.0000377,0.00000516,7.304623321,2.37E-12,gain,yes,-0.0000101,0.00000877,-1.15589092,0.248615841,neg,ns,0.006886541,0.002569155,2.680468929,0.007745082,pos,ns,2.11097398,-0.000216776,0.0000884,-2.453519386,0.014696741,neg,ns,0.061303776,Zfp536,Zfp536_fiveUTR,7,37769824,37769873,37769872,37769873,50,-,ATCTCGAAGTTAATTAAAGCGGTAATGTCCACTTTCCTGGCGACCCTCCG,Promoter (<=1kb),7,37479109,37769962,290854,2,Zfp536-201,89,Zfp536-202;Zfp536-201;Zfp536-203;Zfp536-206;Zfp536-209;Zfp536-208;Zfp536-205;Zfp536-207;Zfp536-210,Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536,0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,6,112,243937,ENSMUSG00000043456,conserved gene but different region,7,37769706,37769937,232,*,232,22,0.620689655,0.984757862,0.094827586,1.49E-16,CpGisland,TRUE,U13,Hc-P
21644,cg13383271,-0.0000307,0.00000686,-4.471227773,0.0000109,loss,ns,-0.0000135,0.0000116,-1.155800457,0.248652794,neg,ns,-0.006361518,0.003412646,-1.864101219,0.063252592,neg,ns,1.198921672,0.0000205,0.000117361,0.174565615,0.86153492,pos,ns,0.754610498,Zfhx3,Zfhx3_Intron,8,108730913,108730962,108730913,108730914,50,-,CGAAATGCAAAACAGCAATTAAGCAGAAATTTGTTGTATGAGGCAGGGAC,"Intron (Zfhx3-204/Zfhx3, intron 7 of 15)",8,107942644,108961630,1018987,1,Zfhx3-204,788269,Zfhx3-204;Zfhx3-202;Zfhx3-201,Zfhx3;Zfhx3;Zfhx3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,114,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
16409,cg21551252,0.0000064,0.00000258,2.478632827,0.013720555,gain,ns,0.00000507,0.00000439,1.155711755,0.248689031,pos,ns,0.000232151,0.001285347,0.180613306,0.856789129,pos,ns,0.067126053,-0.000000859,0.0000442,-0.019426638,0.984513258,neg,ns,0.951247984,Rfx4,Rfx4_Exon,10,84905139,84905188,84905139,84905140,50,-,CGCGCAGGAATTCTGAATATGAGCACATGCAACACTTTCCTGGCTTTGCT,"Exon (Rfx4-202/Rfx4, exon 18 of 18)",10,84756062,84906144,150083,1,Rfx4-202,149077,Rfx4-202;Rfx4-205;Rfx4-203,Rfx4;Rfx4;Rfx4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,13,71137,ENSMUSG00000020037,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13544,cg14530571,0.00000187,0.00000112,1.672060129,0.095521436,gain,ns,0.0000022,0.0000019,1.155698743,0.248694347,pos,ns,0.000820948,0.000556693,1.474687867,0.14131131,pos,ns,0.849823078,-0.00000903,0.0000191,-0.471749254,0.637437638,neg,ns,0.966827584,Dync1i2,Dync1i2_Exon,2,71233651,71233700,71233651,71233652,50,+,CGCTGCATTGGGATACAGATCCATCAGTTCTTCAGCTTCACTCAGATTCC,"Exon (Dync1i2-207/Dync1i2, exon 5 of 17)",2,71211706,71263298,51593,1,Dync1i2-207,21945,Dync1i2-207;Dync1i2-205;Dync1i2-206;Dync1i2-204;Dync1i2-211;Dync1i2-201;Dync1i2-208;Dync1i2-202;Dync1i2-203;Dync1i2-212;Dync1i2-209,Dync1i2;Dync1i2;Dync1i2;Dync1i2;Dync1i2;Dync1i2;Dync1i2;Dync1i2;Dync1i2;Dync1i2;Dync1i2,0;0;0;0;0;0;0;0;0;21647;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,6,13427,ENSMUSG00000027012,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13972,cg25467635,-0.00000481,0.00000444,-1.085030023,0.278751428,loss,ns,0.00000871,0.00000754,1.155689571,0.248698094,pos,ns,0.003878935,0.002208466,1.756393271,0.080008657,pos,ns,1.096863022,-0.0000484,0.0000759,-0.636902845,0.524658168,neg,ns,0.533142953,Hcfc1,Hcfc1_Exon,X,73956612,73956661,73956612,73956613,50,-,CGTGTGTGGCCACTTTGACGTCATCCATGACGAGAGGCACCCAGCCACCA,"Exon (Hcfc1-201/Hcfc1, exon 6 of 26)",20,73942792,73966357,23566,2,Hcfc1-201,9696,Hcfc1-201;Hcfc1-202;Hcfc1-204,Hcfc1;Hcfc1;Hcfc1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,4,15161,ENSMUSG00000031386,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27081,cg00811221,-0.0000232,0.00000826,-2.81378465,0.005209046,loss,ns,0.0000162,0.000014,1.155656218,0.248711721,pos,ns,0.001738861,0.004109996,0.423080843,0.672529626,pos,ns,0.17228858,-0.0000034,0.000141342,-0.024081076,0.980803432,neg,ns,0.296497751,Gm14176,Gm14176_Intergenic_downstream,2,157904889,157904938,157904889,157904890,50,-,CGTGTTTTCTTGTCTCTGATTGTAAACAGATTTGACTAAAGAGGTAAATT,Downstream (2-3kb),2,157901536,157902012,477,1,Gm14176-201,3402,Gm14176-201,Gm14176,3353,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,1,1,100043681,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17601,cg21636509,-0.00000633,0.00000544,-1.163986465,0.245324555,loss,ns,0.0000107,0.00000923,1.155592344,0.248737819,pos,ns,-0.001141339,0.002705534,-0.421853444,0.673424385,neg,ns,0.171711162,0.0000717,0.000093,0.770234836,0.441747169,pos,ns,0.86543845,Madd,Madd_Exon,2,91176223,91176272,91176271,91176272,50,+,ATCATTGCCACGAATGCCATCACAGACATGGAGAGTGCATTGTAGTCTCG,"Exon (Madd-211/Madd, exon 4 of 32)",2,91137360,91179315,41956,2,Madd-211,3043,Madd-211;Madd-212;Madd-206;Madd-207;Madd-208;Madd-213;Madd-205;Madd-203;Madd-204;Madd-209;Madd-210;Madd-214;Madd-202;Madd-215;Madd-216;Madd-224;Madd-226;Madd-227;Madd-217;Madd-201;Madd-222;Madd-220;Madd-225,Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;-494;7565;6767,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,7,228355,ENSMUSG00000040687,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8065,cg04901257,0.0000346,0.00000573,6.038103893,4.45E-09,gain,yes,-0.0000112,0.00000973,-1.155295399,0.248859173,neg,ns,0.000269664,0.002850061,0.094616881,0.924680268,pos,ns,0.03400841,0.000186486,0.000098,1.902659941,0.058011338,pos,ns,0.179059676,Pax5,Pax5_Promoter,4,44710758,44710807,44710806,44710807,50,-,ATTAAGGAACTAAAGAGCTTCTCGCCATGTGAGATCATGTCCTGTTCTCG,Promoter (<=1kb),4,44524757,44710487,185731,2,Pax5-201,-320,Pax5-201;Pax5-202;Pax5-203;Pax5-204;Pax5-205;Pax5-207;Pax5-206;Pax5-209;Pax5-210;Pax5-212;Pax5-213;Pax5-214;Pax5-215,Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5,0;0;0;0;0;0;0;0;0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,10,45,18507,ENSMUSG00000014030,conserved gene and region,4,44710639,44710987,349,*,349,27,0.601719198,0.855004083,0.077363897,8.51E-18,CpGisland,TRUE,NA,NRS
1727,cg04477106,-0.0000496,0.0000124,-4.006795255,0.0000771,loss,ns,0.0000243,0.000021,1.15529499,0.24885934,pos,ns,-0.008835322,0.006163174,-1.433567035,0.152703669,neg,ns,0.816150528,0.000171281,0.000211951,0.808116326,0.419643307,pos,ns,0.785494455,Gm5513,Gm5513_Intergenic_downstream,19,14884355,14884404,14884403,14884404,50,-,GTGTGATTATACCCATACGTATAATTAAGCTGTTACAATACAGACAAGCG,Distal Intergenic,19,14959549,14960766,1218,2,Gm5513-201,76411,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,22,433225,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15100,cg18085619,-0.00000498,0.00000509,-0.978257564,0.328709746,loss,ns,-0.00000999,0.00000865,-1.155286471,0.248862822,neg,ns,-0.003646747,0.00253415,-1.439041681,0.151147625,neg,ns,0.820598672,0.0000598,0.0000871,0.686433208,0.492953074,pos,ns,0.951281125,Sox10,Sox10_Promoter,15,79165934,79165983,79165982,79165983,50,+,TTCGGGGCCTTGAAACAGTGAGCTGTCTTTGTTCGAAATACAGGTGAACG,Promoter (<=1kb),15,79154908,79165240,10333,2,Sox10-203,-694,Sox10-203;Sox10-201;Sox10-202;Sox10-204,Sox10;Sox10;Sox10;Sox10,-694;-1444;-1460;-1448,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,3,20665,ENSMUSG00000033006,mapped to different genes,15,79165825,79165983,159,*,159,10,0.616352201,0.741258741,0.062893082,0.00000467,CpGisland,TRUE,U13,Hc-P
20408,cg27138204,0.0000372,0.0000121,3.087811951,0.002198688,gain,ns,0.0000237,0.0000205,1.15522557,0.248887716,pos,ns,0.009693392,0.006003326,1.614670337,0.107399428,pos,ns,0.96899803,-0.000369542,0.000206454,-1.789948648,0.074438046,neg,ns,0.15261009,Hoxc4,Hoxc4_Intron,15,103032900,103032949,103032948,103032949,50,+,GATTTATGACGTTTTACAGCCCTATAAAAGCTGTAGCGACGAGGCAAGCG,"Intron (Hoxc4-202/Hoxc4, intron 1 of 3)",15,103018934,103036405,17472,1,Hoxc4-202,13966,Hoxc4-202;Hoxc4-201,Hoxc4;Hoxc4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,91,15423,ENSMUSG00000075394,conserved gene and region,15,103032736,103032961,226,*,226,19,0.517699115,1.262198707,0.084070797,2.37E-13,CpGisland,TRUE,U13,Hc-P
25283,cg02751117,-0.00000136,0.00000338,-0.40406511,0.68644345,loss,ns,0.00000663,0.00000574,1.155102783,0.248937912,pos,ns,-0.001664833,0.001680631,-0.990600012,0.322653492,neg,ns,0.491263631,0.0000747,0.0000578,1.293321088,0.196862937,pos,ns,0.929389932,Tmem35a,Tmem35a_Exon,X,134304681,134304730,134304681,134304682,50,+,CGCCCATGCTCTGGTGTTTGGAATCCTGCTCACTTGCCGCCTGCTGATTG,"Exon (Tmem35a-201/Tmem35a, exon 2 of 2)",20,134295225,134305969,10745,1,Tmem35a-201,9456,Cenpi-201;Cenpi-202;Cenpi-204;Tmem35a-201,Cenpi;Cenpi;Cenpi;Tmem35a,-3354;-3425;-3469;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,67564,ENSMUSG00000033578,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26809,cg02820960,0.000000656,0.00000294,0.223295408,0.823452669,gain,ns,-0.00000576,0.00000499,-1.154529841,0.249172228,neg,ns,0.00258755,0.001461343,1.770665761,0.077598979,pos,ns,1.110143994,-0.000141967,0.0000503,-2.824897816,0.005036197,neg,ns,0.951503664,Zzz3,Zzz3_Exon,3,152427463,152427512,152427463,152427464,50,+,CGATCAAGATCACCAAAGAAGAGACCAGAGCCTGTGCCAATTCAGAAAGG,"Exon (Zzz3-206/Zzz3, exon 4 of 4)",3,152395473,152459474,64002,1,Zzz3-204,31990,Zzz3-204;Zzz3-206;Zzz3-202;Zzz3-207;Zzz3-208;Zzz3-210;Zzz3-201;Zzz3-203,Zzz3;Zzz3;Zzz3;Zzz3;Zzz3;Zzz3;Zzz3;Zzz3,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,7,108946,ENSMUSG00000039068,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
720,cg19994716,-0.0000248,0.00000591,-4.201996215,0.0000346,loss,ns,0.0000116,0.00001,1.154507816,0.249181239,pos,ns,0.004912081,0.002943049,1.669044568,0.096118088,pos,ns,1.017194877,-0.000367284,0.000101211,-3.628885248,0.000332811,neg,ns,0.897187548,Nipbl,Nipbl_Intron,15,8291725,8291774,8291725,8291726,50,-,CGCACCGTGACCGCCAGCGCCAAGGGGTTAACATATACTTGTAAAACCAT,"Intron (Nipbl-201/Nipbl, intron 46 of 46)",15,8290617,8444463,153847,2,Nipbl-201,152689,Nipbl-201,Nipbl,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,36,71175,ENSMUSG00000022141,conserved gene and region,15,8291652,8291795,144,*,144,11,0.506944444,1.194570136,0.076388889,0.000000184,CpGisland,TRUE,U10,Tr-S
27332,cg14921004,0.000000409,0.00000137,0.297719084,0.766116998,gain,ns,-0.0000027,0.00000234,-1.154486204,0.24919008,neg,ns,-0.000529851,0.000684334,-0.774258081,0.43936828,neg,ns,0.3571713,0.000012,0.0000235,0.510796578,0.609857065,pos,ns,0.963706273,Ncoa5,Ncoa5_fiveUTR,2,165002905,165002954,165002953,165002954,50,-,TCATAATTTCTGGCCACCAGCACCATGGCATCTGCTTGGGGCATGTTGCG,5' UTR,2,165000357,165034867,34511,2,Ncoa5-201,31913,Ncoa5-201;Ncoa5-202;Ncoa5-203;Ncoa5-204;Slc12a5-207;Slc12a5-201;Slc12a5-208;Slc12a5-205,Ncoa5;Ncoa5;Ncoa5;Ncoa5;Slc12a5;Slc12a5;Slc12a5;Slc12a5,0;0;0;0;0;0;0;6314,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,7,228869,ENSMUSG00000039804,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13704,cg11167862,0.000102851,0.000016,6.413717412,5.30E-10,gain,yes,-0.0000314,0.0000272,-1.154332354,0.24925303,neg,ns,0.022850761,0.00798131,2.863033691,0.004481938,pos,ns,2.348534171,-0.000865937,0.000274477,-3.154864827,0.001763261,neg,ns,0.245491844,Tle1,Tle1_Intron,4,72185455,72185504,72185503,72185504,50,+,AAGATTCAATTCAGGTAAGTGCCACTGCCAAATTTTCTTGTTCCCAGACG,"Intron (Tle1-203/Tle1, intron 4 of 19)",4,72117142,72200919,83778,2,Tle1-203,15415,Tle1-203;Tle1-202;Tle1-204;Tle1-207;Tle1-201;Tle1-205;Tle1-209;Tle1-208,Tle1;Tle1;Tle1;Tle1;Tle1;Tle1;Tle1;Tle1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,20,21885,ENSMUSG00000008305,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22858,cg18680222,0.000005,0.00000133,3.751561274,0.000209715,gain,ns,-0.00000261,0.00000226,-1.154272859,0.249277376,neg,ns,0.002351167,0.000662688,3.547922897,0.000448351,pos,ns,3.348382326,-0.000079,0.0000228,-3.464884168,0.000605216,neg,ns,0.035691249,Sox6,Sox6_Exon,7,116034466,116034515,116034514,116034515,50,-,TTGGCAATCAGTGTGAGCGGCCATGTCGTAAGTATTCAAAGCATTTCCCG,Promoter (<=1kb),7,115801599,116034513,232915,2,Sox6-208,0,1110004F10Rik-205;Sox6-210;Sox6-202;Sox6-204;Sox6-209;Sox6-214;Sox6-208,1110004F10Rik;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6,-4882;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,57,20679,ENSMUSG00000051910,conserved gene but different region,7,116034285,116034518,234,*,234,19,0.636752137,0.811610077,0.081196581,4.56E-13,CpGisland,TRUE,U3,Pr-B
21623,cg17203383,0.00000225,0.00000352,0.63900301,0.523292828,gain,ns,0.0000069,0.00000598,1.15419449,0.249309448,pos,ns,0.001581048,0.001751366,0.902751677,0.367358613,pos,ns,0.434909773,0.0000402,0.0000602,0.666910393,0.505325447,pos,ns,0.905171982,Cep112,Cep112_Intron,11,108606570,108606619,108606618,108606619,50,+,GCCTTAACTACAGAAACCACAGGTAGCCAGATTAAAAATCCCATGGCGCG,"Intron (Cep112-213/Cep112, intron 20 of 26)",11,108425192,108860615,435424,1,Cep112-213,181378,Cep112-213;Cep112-201;Cep112-206;Cep112-216;Cep112-208;Cep112-211;Cep112-218,Cep112;Cep112;Cep112;Cep112;Cep112;Cep112;Cep112,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,9,76380,ENSMUSG00000020728,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20044,cg17983153,-0.0000185,0.0000258,-0.715510261,0.474832361,loss,ns,-0.0000506,0.0000439,-1.154105698,0.249345789,neg,ns,-0.008264305,0.012855845,-0.642844195,0.520800381,neg,ns,0.283328707,0.000343932,0.000442111,0.777931343,0.437202799,pos,ns,0.737270817,Ubtf,Ubtf_Exon,11,102310914,102310963,102310914,102310915,50,-,CGGAAGCCTAACCTCGTACTCCTTCCGCTGCTCCAGGGCCTTATGAATCC,"Exon (Ubtf-210/Ubtf, exon 8 of 21)",11,102304560,102319096,14537,2,Ubtf-210,8133,Ubtf-210;Ubtf-213;Ubtf-202;Ubtf-203;Ubtf-204;Ubtf-201;Ubtf-205;Ubtf-206;Ubtf-209;Ubtf-212;Ubtf-211;Ubtf-208;Ubtf-207,Ubtf;Ubtf;Ubtf;Ubtf;Ubtf;Ubtf;Ubtf;Ubtf;Ubtf;Ubtf;Ubtf;Ubtf;Ubtf,0;0;0;0;0;0;0;0;0;-1474;-1006;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,8,21429,ENSMUSG00000020923,conserved gene and region,11,102310837,102310940,104,*,104,10,0.634615385,0.969245107,0.096153846,0.000000092,CpGisland,TRUE,U12,Tr-I
18838,cg11691077,-0.0000041,0.00000217,-1.890233107,0.05965941,loss,ns,0.00000425,0.00000368,1.154088625,0.249352777,pos,ns,0.002279925,0.001079441,2.112134255,0.035474546,pos,ns,1.450083158,-0.000102541,0.0000371,-2.762283251,0.006082508,neg,ns,0.951937744,Gk2,Gk2_Intergenic_upstream,5,97642291,97642340,97642339,97642340,50,+,AACTGATTAGCATAGTTTTTAAGCCACTCTGAAGTGTTTGTTAGGCTTCG,Distal Intergenic,5,97455142,97457021,1880,2,Gk2-201,-185270,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,13,14626,ENSMUSG00000050553,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4375,cg04611891,-0.0000158,0.00000836,-1.886537049,0.060157054,loss,ns,0.0000164,0.0000142,1.154006551,0.249386373,pos,ns,0.000140007,0.004159702,0.03365796,0.973171564,pos,ns,0.01181059,-0.000233722,0.000143052,-1.633829034,0.10330988,neg,ns,0.8405087,Opcml,Opcml_Intron,9,28623181,28623230,28623181,28623182,50,-,CGCAGGGGTGCTAATTTGCAAGGCCCATTACTCAAATAAAACATTAAAAG,"Intron (Opcml-202/Opcml, intron 2 of 7)",9,27790947,28925410,1134464,1,Opcml-202,832234,Opcml-202;Opcml-201;Opcml-204;Opcml-208,Opcml;Opcml;Opcml;Opcml,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,12,330908,ENSMUSG00000062257,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16850,cg19044429,-0.00000233,0.0000075,-0.311232058,0.755833399,loss,ns,-0.0000147,0.0000127,-1.153944105,0.249411936,neg,ns,-0.00107307,0.003733734,-0.287398614,0.773999142,neg,ns,0.11125952,-0.0000539,0.000128403,-0.41946234,0.675168801,neg,ns,0.942451208,Diaph3,Diaph3_Exon,14,86772639,86772688,86772639,86772640,50,+,CGGAAGGCAGCCCCGGACTGCAAGGCCTCCAGCAGATTATCCATCACTCC,"Exon (Diaph3-201/Diaph3, exon 26 of 28)",14,86655367,87141224,485858,2,Diaph3-201,368536,Diaph3-201;Diaph3-202;Diaph3-207;Diaph3-208,Diaph3;Diaph3;Diaph3;Diaph3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,11,56419,ENSMUSG00000022021,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15815,cg23560366,-0.0000312,0.0000113,-2.764943886,0.006034323,loss,ns,0.0000221,0.0000192,1.153930433,0.249417533,pos,ns,0.002194537,0.005620858,0.390427332,0.696488729,pos,ns,0.157085907,-0.000219442,0.000193301,-1.135237177,0.257152918,neg,ns,0.710450182,Mef2c,Mef2c_Intron,13,83537337,83537386,83537337,83537338,50,-,CGTTTTTCCACTGTCATCTGGCTCATTCCCAGCAGATGCACACAATCTGT,"Intron (Mef2c-218/Mef2c, intron 2 of 10)",13,83504034,83663343,159310,1,Mef2c-218,33303,Mef2c-218;Mef2c-228;Mef2c-221;Mef2c-229;Mef2c-201;Mef2c-202;Mef2c-207;Mef2c-231;Mef2c-222;Mef2c-223;Mef2c-227;Mef2c-217;Mef2c-213;Mef2c-214;Mef2c-215;Mef2c-226;Mef2c-216,Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,41,17260,ENSMUSG00000005583,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5634,cg16253950,-0.00000349,0.00000281,-1.245569307,0.213863157,loss,ns,0.0000055,0.00000477,1.153773391,0.24948183,pos,ns,0.003101407,0.001396546,2.220768749,0.027089159,pos,ns,1.567204484,-0.0000963,0.000048,-2.004215972,0.045916518,neg,ns,0.940273291,Mapkap1,Mapkap1_fiveUTR,2,34435147,34435196,34435147,34435148,50,-,CGACTCCGAAAAGAGAGACAAAACCAGATCAAATGCAAAAATATTCAGTG,5' UTR,2,34406771,34497716,90946,1,Mapkap1-210,28376,Gm13406-201;Mapkap1-210;Mapkap1-204;Mapkap1-208;Mapkap1-211;Mapkap1-202;Mapkap1-201;Mapkap1-209;Mapkap1-203;Mapkap1-207,Gm13406;Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1,1386;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,59,227743,ENSMUSG00000038696,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16858,cg02159819,-0.000000936,0.000000591,-1.583891225,0.114238067,loss,ns,0.00000116,0.000001,1.153697355,0.249512965,pos,ns,-0.000158943,0.000294066,-0.540501111,0.589239611,neg,ns,0.229708066,-0.00000501,0.0000101,-0.495156446,0.620840473,neg,ns,0.986087939,Ythdc1,Ythdc1_Exon,5,86820667,86820716,86820667,86820668,50,-,CGTTCGTGCTGTCCGAAAAGGTATCATTTAAATTTGAAATTGTTTTCATT,"Exon (Ythdc1-203/Ythdc1, exon 6 of 17)",5,86804221,86836654,32434,1,Ythdc1-202,16446,Ythdc1-202;Ythdc1-203;Ythdc1-208;Ythdc1-201;Ythdc1-207;Ythdc1-206,Ythdc1;Ythdc1;Ythdc1;Ythdc1;Ythdc1;Ythdc1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,17,231386,ENSMUSG00000035851,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9497,cg18961523,0.000053,0.0000203,2.60557782,0.00961451,gain,ns,-0.0000399,0.0000346,-1.153620309,0.249544517,neg,ns,-0.036766621,0.01012471,-3.631375069,0.000329747,neg,ns,3.481819772,0.001102773,0.000348188,3.167178146,0.001692534,pos,ns,0.796559674,Fam120a,Fam120a_Exon,13,48910322,48910371,48910370,48910371,50,-,TAAACAGGACTCCGTAAACATACTGACGAACTGGCCTATAGAGCAGAGCG,"Exon (Fam120a-201/Fam120a, exon 10 of 18)",13,48879219,48968017,88799,2,Fam120a-201,57646,Fam120a-201,Fam120a,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,8,218236,ENSMUSG00000038014,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24972,cg27109335,-0.0000781,0.0000112,-6.99812649,1.61E-11,loss,yes,0.0000219,0.000019,1.15354483,0.24957543,pos,ns,-0.011393247,0.005551965,-2.052110911,0.040998445,neg,ns,1.387232619,0.000380126,0.000190932,1.990900048,0.047369476,pos,ns,0.913836648,Ptpra,Ptpra_Exon,2,130540513,130540562,130540513,130540514,50,+,CGCCTCATCACTCAGTTCCACTTTACCAGCTGGCCAGACTTTGGGGTGCC,"Exon (Ptpra-201/Ptpra, exon 12 of 21)",2,130450278,130556124,105847,1,Ptpra-201,90235,Ptpra-201;Ptpra-210;Ptpra-202;Ptpra-205;Ptpra-207;Ptpra-204;Ptpra-208;Ptpra-203;Ptpra-209,Ptpra;Ptpra;Ptpra;Ptpra;Ptpra;Ptpra;Ptpra;Ptpra;Ptpra,0;0;0;7842;7383;0;0;-1063;-3971,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,19262,ENSMUSG00000027303,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11093,cg19901001,0.00000366,0.00000571,0.640988125,0.52200397,gain,ns,-0.0000112,0.00000971,-1.153350078,0.249655203,neg,ns,0.004882194,0.002843336,1.717065269,0.086966029,pos,ns,1.060650358,-0.000097,0.0000978,-0.99161485,0.3221588,neg,ns,0.87998929,Gm13518,Gm13518_Intergenic_downstream,2,56540138,56540187,56540186,56540187,50,-,CTGTACATATCATTAGGCAAAGCCAAATATTGTTAAGTAAACAGGCAGCG,Distal Intergenic,2,56039853,56040085,233,1,Gm13518-201,500334,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,37,37,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10695,cg14057581,-0.00000253,0.000013,-0.194738564,0.845725182,loss,ns,0.0000255,0.0000221,1.153304223,0.249673988,pos,ns,0.031458587,0.006476967,4.856993816,0.00000189,pos,ns,5.722573311,-0.001083491,0.000222742,-4.864325446,0.00000183,neg,yes,0.14090091,Zfp608,Zfp608_Exon,18,54988381,54988430,54988429,54988430,50,-,TGTCCTTCTCCAAATCAGCGTCCAAATCAATTATTAAATTTCCAACCCCG,"Exon (Zfp608-201/Zfp608, exon 2 of 10)",18,54888048,54990166,102119,2,Zfp608-201,1736,Zfp608-201;Zfp608-203,Zfp608;Zfp608,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,32,269023,ENSMUSG00000052713,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
17575,cg02885867,0.0000214,0.0000097,2.209659839,0.027859398,gain,ns,-0.000019,0.0000165,-1.153102662,0.249756574,neg,ns,-0.010746638,0.00482957,-2.22517512,0.026788797,neg,ns,1.572046796,0.000309274,0.000166088,1.862106065,0.063534162,pos,ns,0.583228813,Spi1,Spi1_fiveUTR,2,91096749,91096798,91096749,91096750,50,+,CGATAAAATCAGGAACTTGTGCTGGCCCTGCAATGTCAAGGGAGGGGGCT,Promoter (<=1kb),2,91096780,91113315,16536,1,Spi1-203,0,Spi1-204;Spi1-201;Spi1-203,Spi1;Spi1;Spi1,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,7,20375,ENSMUSG00000002111,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
2293,cg27343801,-0.00000676,0.0000127,-0.531018789,0.595785997,loss,ns,0.0000249,0.0000216,1.153043972,0.249780625,pos,ns,-0.007097434,0.006336091,-1.120159615,0.263512829,neg,ns,0.579198236,0.000822783,0.000217898,3.776008922,0.000190993,pos,ns,0.234781056,Nova2,Nova2_Exon,7,18957721,18957770,18957721,18957722,50,-,CGCCATCGTGCAGAAGGTACAAGAAGACCCCCAGAGCAGCAGCTGCCTCA,"Exon (Nova2-201/Nova2, exon 4 of 4)",7,18925888,18965319,39432,1,Nova2-201,31833,Nova2-201;Nova2-202,Nova2;Nova2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,5,384569,ENSMUSG00000030411,conserved gene and region,7,18957461,18958382,922,*,922,117,0.737527115,0.934329961,0.126898048,3.93E-102,CpGisland,TRUE,U3,Pr-B
17905,cg04425966,-0.00000327,0.00000557,-0.586989169,0.557638221,loss,ns,-0.0000109,0.00000946,-1.153007506,0.249795569,neg,ns,-0.003086653,0.00277028,-1.114202755,0.266055317,neg,ns,0.575028057,-0.0000927,0.0000953,-0.972898277,0.331362381,neg,ns,0.850496689,Irx5,Irx5_Intergenic_downstream,8,92418610,92418659,92418610,92418611,50,+,CGCCGACTGTACCATTTGATCATTAATTTATCACAGTTCTAGCAGTTTGT,Distal Intergenic,8,92357749,92361456,3708,1,Irx5-201,60861,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,11,30,54352,ENSMUSG00000031737,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22175,cg05985706,0.00000271,0.00000711,0.381264602,0.703268088,gain,ns,0.0000139,0.0000121,1.152858618,0.249856592,pos,ns,0.004151693,0.003537777,1.173531736,0.241483479,pos,ns,0.617112577,0.00000995,0.000121664,0.081811188,0.934849655,pos,ns,0.894459737,Hdx,Hdx_Exon,X,111600746,111600795,111600794,111600795,50,+,AAATCAGCAGGGCCTCCTCTTGGAGGTGGAACTTCAATCCCCATTAAACG,"Exon (Hdx-202/Hdx, exon 6 of 10)",20,111569931,111697079,127149,2,Hdx-202,96284,Hdx-202;Hdx-201,Hdx;Hdx,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,8,245596,ENSMUSG00000034551,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11374,cg19469687,0.00000071,0.00000409,0.173448853,0.862411829,gain,ns,-0.00000802,0.00000695,-1.152745319,0.249903036,neg,ns,-0.003218852,0.002037378,-1.579899157,0.115149734,neg,ns,0.93873706,0.000182246,0.0000701,2.601095532,0.009738266,pos,ns,0.931778228,Pfn2,Pfn2_Intron,3,57846103,57846152,57846103,57846104,50,+,CGCCCCCATCAGAACTGCAGAGTCATAGCAGGCCCCAGCCATTTCCAAGC,"Intron (Pfn2-201/Pfn2, intron 1 of 2)",3,57841895,57848079,6185,2,Pfn2-201,1927,Pfn2-201;Pfn2-202;Pfn2-204;Pfn2-203,Pfn2;Pfn2;Pfn2;Pfn2,0;0;-225;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,3,18645,ENSMUSG00000027805,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7621,cg27208811,-0.00000856,0.000012,-0.715155411,0.475051265,loss,ns,-0.0000235,0.0000203,-1.152732757,0.249908186,neg,ns,0.003760794,0.005959923,0.631013838,0.528496429,pos,ns,0.276957942,0.000168989,0.000204961,0.824490427,0.410294884,pos,ns,0.788314728,Zbtb20,Zbtb20_Intron,16,43502986,43503035,43502986,43502987,50,-,CGAGCAGTATTGCTTATCAGAACACACCAACAGTCTTTTTGTAATATTCG,"Intron (Zbtb20-211/Zbtb20, intron 4 of 4)",16,42907542,43569781,662240,1,Zbtb20-211,595444,Zbtb20-211;Zbtb20-217;Zbtb20-204;Zbtb20-215;Zbtb20-201;Zbtb20-203;Zbtb20-214;Zbtb20-213;Zbtb20-219;Zbtb20-216;Zbtb20-208;Zbtb20-207;Zbtb20-220;Zbtb20-206,Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,98,56490,ENSMUSG00000022708,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
483,cg01796316,0.00000258,0.00000257,1.006829696,0.314801848,gain,ns,0.00000502,0.00000436,1.152652611,0.249941043,pos,ns,0.002329067,0.001276846,1.824077677,0.069102929,pos,ns,1.160503542,-0.000110285,0.0000439,-2.511573064,0.012527569,neg,ns,0.922858099,Epc1,Epc1_Exon,18,6449054,6449103,6449054,6449055,50,-,CGAGGCCTAAAATGCCGCCATCTACATGATTTGATATTGACTAGTATCTG,"Exon (Epc1-203/Epc1, exon 10 of 14)",18,6435951,6516108,80158,2,Epc1-203,67005,Epc1-203;Epc1-201,Epc1;Epc1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,8,13831,ENSMUSG00000024240,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
174,cg10196372,-0.00000343,0.00000164,-2.098511985,0.036668818,loss,ns,0.0000032,0.00000278,1.152544173,0.249985504,pos,ns,0.000958366,0.000814489,1.176645851,0.240239591,pos,ns,0.61935542,-0.00000536,0.000028,-0.191287282,0.848425748,neg,ns,0.046688901,Tfap4,Tfap4_Promoter,16,4559138,4559187,4559186,4559187,50,+,CCGGGACTGCTGCAGAACCACGTGGGTCTGTTTGCAATTTACAAACGTCG,Promoter (<=1kb),16,4544661,4559854,15194,2,Tfap4-201,667,Tfap4-201;Tfap4-203,Tfap4;Tfap4,0;-355,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,3,9,83383,ENSMUSG00000005718,conserved gene and region,16,4558598,4559381,784,*,784,66,0.640306122,0.823529412,0.084183674,4.79E-45,CpGisland,TRUE,U1,Pr-A
1042,cg22040516,0.0000771,0.0000103,7.468777529,8.29E-13,gain,yes,-0.0000202,0.0000175,-1.152538413,0.249987867,neg,ns,0.009573045,0.005137027,1.863537885,0.063331989,pos,ns,1.198376875,-0.000243464,0.000176662,-1.37813708,0.169154845,neg,ns,0.092381668,Vwc2,Vwc2_Exon,11,11115960,11116009,11116008,11116009,50,+,TCCTGGTCACCTGCTGCCTGATGGTGGCTCTGTGCAGTCCGAGCATCCCG,"Exon (Vwc2-202/Vwc2, exon 2 of 4)",11,11114223,11263526,149304,1,Vwc2-202,1737,Vwc2-202;Vwc2-203;Vwc2-201;Vwc2-204,Vwc2;Vwc2;Vwc2;Vwc2,0;0;0;-476,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,319922,ENSMUSG00000050830,conserved gene and region,11,11115999,11116572,574,*,574,55,0.691637631,0.804946456,0.095818815,6.92E-41,CpGisland,TRUE,U13,Hc-P
10666,cg10513661,0.000114142,0.0000114,9.999784228,1.38E-20,gain,yes,-0.0000223,0.0000194,-1.152309065,0.250081922,neg,ns,0.008320871,0.005681099,1.464658548,0.144027482,pos,ns,0.841554633,-0.000072,0.000195373,-0.36833313,0.712876246,neg,ns,0.126503024,Zfp608,Zfp608_Intron,18,54902281,54902330,54902329,54902330,50,+,TGTCTGCAGTGAAAGGCTTTTGTTATTGCTTTTCCCCTAAGGGTTTCGCG,"Intron (Zfp608-201/Zfp608, intron 3 of 9)",18,54888048,54990166,102119,2,Zfp608-201,87836,Zfp608-201;Zfp608-204;Zfp608-203,Zfp608;Zfp608;Zfp608,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,32,269023,ENSMUSG00000052713,conserved gene and region,18,54902327,54902405,79,*,79,10,0.658227848,1.175595238,0.126582279,5.68E-09,CpGisland,TRUE,U6,En-Sp
6986,cg15119729,-0.0000153,0.00000277,-5.504296175,7.78E-08,loss,yes,0.00000542,0.00000471,1.152143235,0.250149944,pos,ns,0.004019569,0.001379306,2.91419705,0.003825532,pos,ns,2.417308184,-0.0000334,0.0000474,-0.703837975,0.482062012,neg,ns,0.928855832,Gm7382,Gm7382_Intron,15,40355018,40355067,40355066,40355067,50,+,TACAGTAACTAATTACCATCCTTAGCAAACAAATAGCTTAACATAATACG,"Intron (Gm41311-201/Gm41311-201, intron 4 of 5)",15,40537321,40538425,1105,1,Gm7382-201,-182254,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,22,664872,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17182,cg16367989,0.00000866,0.00000182,4.749360488,0.00000312,gain,ns,0.00000357,0.0000031,1.152104666,0.250165766,pos,ns,0.002653437,0.000907346,2.924393638,0.003705704,pos,ns,2.431129325,-0.0000477,0.0000312,-1.529706372,0.127109172,neg,ns,0.057138351,Panx2,Panx2_Exon,15,89060247,89060296,89060247,89060248,50,-,CGTGCTGGTGCCCATCCTGCTGGTCACCCTGGTCTTCACCAAGAACTTCG,Promoter (<=1kb),15,89059734,89069878,10145,1,Panx2-202,513,Panx2-202;Panx2-203,Panx2;Panx2,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,406218,ENSMUSG00000058441,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
25528,cg07682092,-0.000118254,0.0000196,-6.024243566,4.81E-09,loss,yes,-0.0000384,0.0000333,-1.152064592,0.250182207,neg,ns,-0.016506628,0.009769919,-1.689535739,0.092122195,neg,ns,1.035635723,-0.000168322,0.000335987,-0.50097806,0.616742089,neg,ns,0.712952035,Gm13005,Gm13005_Intergenic_downstream,4,137189235,137189284,137189235,137189236,50,-,CGCACCTGCTTCCAAGGGCTCTAATTTCCTGTAAGTGTAAGAATTCAGGT,Distal Intergenic,4,137219760,137220399,640,2,Gm13005-201,31164,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,4,100047000,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8081,cg04322052,0.0000213,0.0000022,9.644951463,2.02E-19,gain,yes,-0.00000431,0.00000374,-1.152020437,0.250200323,neg,ns,-0.000131191,0.001097059,-0.119584422,0.904889821,neg,ns,0.043404297,0.000044,0.0000377,1.167320984,0.243977858,pos,ns,0.04639212,Pax2,Pax2_Intergenic_upstream,19,44726395,44726444,44726443,44726444,50,+,TTTCTGATTAAAGAGGAATTCATCTCGTATCTGCCTCCTGCCAGGGGCCG,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-29601,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23193,cg16300531,0.0000696,0.00000914,7.61083965,3.30E-13,gain,yes,-0.0000179,0.0000155,-1.152010487,0.250204405,neg,ns,0.01202443,0.004550871,2.642226271,0.008654347,pos,ns,2.062765693,-0.0000585,0.000156504,-0.373868555,0.708757681,neg,ns,0.292897441,Ksr2,Ksr2_Exon,5,117414852,117414901,117414900,117414901,50,-,AAGCGAGGAGCAGCAGCCTCTGAGTTTGCAAAAAGCCTTACAGCAGTGCG,Promoter (<=1kb),5,117414000,117555942,141943,1,Ksr2-201,852,Ksr2-201;Ksr2-202,Ksr2;Ksr2,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,333050,ENSMUSG00000061578,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
20642,cg14700821,-0.00000731,0.00000247,-2.960290904,0.003310622,loss,ns,0.00000483,0.0000042,1.15192398,0.2502399,pos,ns,0.000101756,0.001229039,0.082792929,0.934069625,pos,ns,0.02962075,-0.0000209,0.0000423,-0.494797453,0.621093592,neg,ns,0.033360176,Adamts6,Adamts6_Promoter,13,104286999,104287048,104286999,104287000,50,-,CGACCCAGGACACATGCGCACCCGACGCAGCCCAGGCACATCTGCAGACT,Promoter (<=1kb),13,104287835,104496695,208861,1,Adamts6-207,-836,Adamts6-207;Adamts6-202;Adamts6-201;Adamts6-206,Adamts6;Adamts6;Adamts6;Adamts6,0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,6,31,108154,ENSMUSG00000046169,conserved gene and region,13,104286963,104287052,90,*,90,8,0.633333333,0.997229917,0.088888889,0.00000534,CpGisland,TRUE,U1,Pr-A
24834,cg17835092,-0.00000472,0.0000128,-0.367605896,0.713417964,loss,ns,-0.0000251,0.0000218,-1.151861838,0.2502654,neg,ns,-0.005920927,0.006392995,-0.926158617,0.355084001,neg,ns,0.449668895,0.0000463,0.000219855,0.210662311,0.833289189,pos,ns,0.785435129,Zfp362,Zfp362_Exon,4,128777184,128777233,128777232,128777233,50,+,GCCCGGTAGCAGTTGGGACACTTGTAGGGCTTGTCCTTGTTGTGCTGGCG,"Exon (Zfp362-202/Zfp362, exon 8 of 9)",4,128773088,128806045,32958,2,Zfp362-202,28812,Zfp362-202;Zfp362-201;Zfp362-204,Zfp362;Zfp362;Zfp362,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,7,230761,ENSMUSG00000028799,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1733,cg21217093,0.0000388,0.00000617,6.279205606,1.15E-09,gain,yes,0.0000121,0.0000105,1.151854933,0.250268234,pos,ns,0.009905587,0.003072229,3.224234721,0.001397759,pos,ns,2.854567842,0.0000371,0.000105654,0.3510866,0.725761862,pos,ns,0.113007012,Gm5513,Gm5513_Intergenic_downstream,19,14890960,14891009,14890960,14890961,50,+,CGCCGGAATGTCAAAGAGGGATTGTGGGTGGAAAAATTATGGATTTAAAC,Distal Intergenic,19,14959549,14960766,1218,2,Gm5513-201,69757,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,22,433225,NA,mapped to different genes,19,14890943,14890964,22,*,22,5,0.863636364,1.25,0.227272727,0.00000782,CpGisland,TRUE,U13,Hc-P
18656,cg01759834,0.0000659,0.0000124,5.297028341,0.000000224,gain,yes,0.0000243,0.0000211,1.151498262,0.25041463,pos,ns,0.021435074,0.006189782,3.462977266,0.000609359,pos,ns,3.215126499,-0.000456768,0.000212866,-2.145799768,0.032665233,neg,ns,0.233878153,Skap1,Skap1_Intron,11,96596088,96596137,96596088,96596089,50,+,CGGTGGCTGTAATCAGCGTTGTTGCTGTCTGTTTCCTCAGACTAATAGCA,"Intron (Skap1-204/Skap1, intron 4 of 12)",11,96464593,96758941,294349,1,Skap1-204,131495,Skap1-204;Skap1-203;Skap1-209;Skap1-201;Skap1-206;Skap1-208,Skap1;Skap1;Skap1;Skap1;Skap1;Skap1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,40,46,78473,ENSMUSG00000057058,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
27959,cg20745529,-0.0000197,0.0000108,-1.830701727,0.068104919,loss,ns,0.000021,0.0000183,1.151335102,0.25048162,pos,ns,0.006879807,0.005354591,1.284842588,0.199806491,pos,ns,0.699390408,-0.000447513,0.000184144,-2.430232711,0.015656376,neg,ns,0.521749554,Gm38022,Gm38022_Intergenic_downstream,1,193488246,193488295,193488294,193488295,50,+,GAGTAACAGCAACTGCTTAGCATCCATTCTTCCTTGTAATTAATATCACG,Distal Intergenic,1,193475290,193475692,403,1,Gm38022-201,12956,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,108167843,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14975,cg17847581,-0.0000039,0.00000182,-2.136981799,0.033381916,loss,ns,-0.00000357,0.0000031,-1.15132294,0.250486614,neg,ns,-0.000275024,0.00090789,-0.302926252,0.762149239,neg,ns,0.11795998,0.0000217,0.0000312,0.694549927,0.487857602,pos,ns,0.947469671,2610507B11Rik,2610507B11Rik_threeUTR,11,78274824,78274873,78274872,78274873,50,-,ATCCAGATTGAGTGCAGTCAGGGCCATGTCTTCACTCGGGGGACTCAGCG,3' UTR,11,78261752,78290623,28872,1,2610507B11Rik-201,13072,2610507B11Rik-201;2610507B11Rik-204;2610507B11Rik-207,2610507B11Rik;2610507B11Rik;2610507B11Rik,0;2853;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,2,72503,ENSMUSG00000010277,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17255,cg21602298,0.0000657,0.00000695,9.454210192,8.36E-19,gain,yes,-0.0000136,0.0000118,-1.151286489,0.250501581,neg,ns,0.009516389,0.003457813,2.752140813,0.006269404,pos,ns,2.202773757,-0.00044547,0.000118914,-3.746155659,0.000214082,neg,ns,0.080040274,Efna3,Efna3_Exon,3,89316085,89316134,89316085,89316086,50,-,CGAACACCTTCATCCTCAGACACTTCCAGTGCAGGTTGTGAGTGGGCGTG,"Exon (Gm15998-201/Gm15998-201, exon 2 of 3)",3,89313899,89322965,9067,2,Efna3-201,6831,Efna3-201;Efna3-203;Efna3-202,Efna3;Efna3;Efna3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,6,13638,ENSMUSG00000028039,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
12753,cg26976705,0.0000262,0.00000423,6.200900533,1.79E-09,gain,yes,-0.00000828,0.00000719,-1.151241369,0.250520109,neg,ns,0.006761384,0.002106677,3.209501529,0.001468944,pos,ns,2.832994798,-0.000167833,0.0000724,-2.316583942,0.021178102,neg,ns,0.058614618,Phox2b,Phox2b_Promoter,5,67098495,67098544,67098495,67098496,50,+,CGGTTCGGGTGTGACTAGGATAGTGTAACCCTGTAAGTGAATTACCCCTC,Promoter (<=1kb),5,67094399,67099301,4903,2,Phox2b-201,757,Phox2b-201;Phox2b-202,Phox2b;Phox2b,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,13,28,18935,ENSMUSG00000012520,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
3789,cg06166108,-0.0000284,0.00000366,-7.75451914,1.29E-13,loss,yes,-0.00000717,0.00000623,-1.151214343,0.250531208,neg,ns,0.001496884,0.001823899,0.820705261,0.412444817,pos,ns,0.38463415,-0.000214577,0.0000627,-3.42098368,0.000707602,neg,ns,0.918379051,Nlgn1,Nlgn1_Exon,3,25436402,25436451,25436450,25436451,50,-,TCTGGTATTACATCACCATCAATCACAGGTCCAAAGGCTATGTGGTATCG,"Exon (Nlgn1-205/Nlgn1, exon 7 of 8)",3,25426215,26332460,906246,2,Nlgn1-205,896009,Nlgn1-205;Nlgn1-201;Nlgn1-202;Nlgn1-203,Nlgn1;Nlgn1;Nlgn1;Nlgn1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,7,192167,ENSMUSG00000063887,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5858,cg12729239,-0.000105367,0.0000119,-8.842767057,7.19E-17,loss,yes,-0.0000233,0.0000202,-1.151125166,0.250567832,neg,ns,-0.013150094,0.005930512,-2.217362394,0.027323352,neg,ns,1.563466025,0.0000152,0.00020395,0.074762402,0.940451977,pos,ns,0.715027902,Ctnna1,Ctnna1_Intron,18,35045827,35045876,35045827,35045828,50,+,CGTGCATATTCCAATAAAGCACTCAAAGAGGTAATTATTTCTGGGCTGCC,"Intron (Gm36037-202/Gm36037-202, intron 3 of 3)",18,35118859,35254779,135921,1,Ctnna1-201,-72983,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,13,12385,ENSMUSG00000037815,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23409,cg08747377,0.0000104,0.00000946,1.102573959,0.271067452,gain,ns,0.0000185,0.0000161,1.1511089,0.250574513,pos,ns,0.001304475,0.004707157,0.277125875,0.781868154,pos,ns,0.106866476,0.0000927,0.000161879,0.572373425,0.56748387,pos,ns,0.152995319,Cdh13,Cdh13_fiveUTR,8,118283775,118283824,118283823,118283824,50,+,GGCTCCCACGGAAAATATGCTCAGTGCAGCCGCGTGCATGAATGAAAACG,Promoter (<=1kb),8,118283775,118968868,685094,1,Cdh13-204,0,Cdh13-201;Cdh13-205;Cdh13-204;Cdh13-203;Cdh13-206,Cdh13;Cdh13;Cdh13;Cdh13;Cdh13,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,4,12554,ENSMUSG00000031841,conserved gene and region,8,118283569,118284088,520,*,520,36,0.607692308,0.75036075,0.069230769,7.96E-22,CpGisland,TRUE,NA,NRS
3405,cg05383437,0.000124364,0.0000141,8.798283002,9.88E-17,gain,yes,-0.0000276,0.000024,-1.151003584,0.250617771,neg,ns,0.013606486,0.007035161,1.93406902,0.054014584,pos,ns,1.267488965,-0.0005396,0.000241939,-2.230317875,0.026441897,neg,ns,0.101371385,Kcnma1,Kcnma1_Exon,14,24004011,24004060,24004011,24004012,50,+,CGTCTAGGCTGAGATGGTTCGCGTGGATATTGCTACTCATTCTAAGACTG,Promoter (<=1kb),14,23292291,24004859,712569,2,Kcnma1-205,799,Kcnma1-205;Kcnma1-212;Kcnma1-211;Kcnma1-229;Kcnma1-234;Kcnma1-223;Kcnma1-214;Kcnma1-216;Kcnma1-219;Kcnma1-220;Kcnma1-224;Kcnma1-233;Kcnma1-236;Kcnma1-237;Kcnma1-213;Kcnma1-228;Kcnma1-221;Kcnma1-225;Kcnma1-226;Kcnma1-230;Kcnma1-235;Kcnma1-238;Kcnma1-215,Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,16,41,16531,ENSMUSG00000063142,conserved gene and region,14,24004009,24005040,1032,*,1032,138,0.754844961,0.943439723,0.13372093,5.00E-124,CpGisland,TRUE,U3,Pr-B
27109,cg24480575,0.00000126,0.0000013,0.970735445,0.332436825,gain,ns,-0.00000255,0.00000221,-1.150770928,0.250713352,neg,ns,0.0000686,0.000648132,0.105775146,0.915829168,pos,ns,0.038185529,-0.0000731,0.0000223,-3.277639136,0.001165663,neg,ns,0.961709901,Brinp2,Brinp2_threeUTR,1,158246556,158246605,158246604,158246605,50,-,GGCTCATAGTAGATTGTCTCATTGGAGCTGTCATCCAGGGACTTGATTCG,3' UTR,1,158245269,158356229,110961,2,Brinp2-204,109624,Brinp2-204;Brinp2-201,Brinp2;Brinp2,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,240843,ENSMUSG00000004031,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
977,cg20212950,-0.000000186,0.000000502,-0.370731485,0.711090738,loss,ns,0.000000981,0.000000852,1.150470559,0.250836789,pos,ns,0.00000784,0.00024974,0.031393084,0.974976258,pos,ns,0.01100596,-0.00000164,0.00000859,-0.191366159,0.848364008,neg,ns,0.988226442,Qk,Qk_threeUTR,17,10213364,10213413,10213412,10213413,50,-,TCTGCGGTCACAATCCTTTGGTAAGGATGGACACGCATATCGTGCCTTCG,3' UTR,17,10202601,10319380,116780,2,Qk-204,105967,Qk-204;Qk-202;Qk-203;Qk-201;Qk-206;Qk-205,Qk;Qk;Qk;Qk;Qk;Qk,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,12,17,19317,ENSMUSG00000062078,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18047,cg21050524,0.00000482,0.00000832,0.579100573,0.562941859,gain,ns,0.0000163,0.0000141,1.150468023,0.250837831,pos,ns,0.013718353,0.004139185,3.314264216,0.001027761,pos,ns,2.988107792,-0.00024672,0.000142346,-1.733240431,0.084047311,neg,ns,0.856683227,Pola1,Pola1_Intron,X,93409296,93409345,93409344,93409345,50,-,ACAAAGACATTTAGCTGAAGCGGTATTTGATGTCTCCACTTTTTTGTGCG,"Intron (Pola1-201/Pola1, intron 35 of 36)",20,93304767,93632155,327389,2,Pola1-201,222810,Pola1-201,Pola1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,59,62,18968,ENSMUSG00000006678,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1997,cg04067458,0.00000181,0.00000594,0.304245999,0.76114461,gain,ns,0.0000116,0.0000101,1.150396491,0.250867233,pos,ns,0.002589438,0.002956152,0.875948686,0.381736153,pos,ns,0.418236708,0.0000227,0.000101662,0.22333581,0.823421255,pos,ns,0.881746706,Gm5283,Gm5283_Intergenic_downstream,3,16938880,16938929,16938928,16938929,50,-,CATAGCAATCAGGGCTGTTCTCAGGTTATTGAATAGTGTGTTGACTTCCG,Distal Intergenic,3,17230642,17230975,334,2,Gm5283-201,292095,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,10,383936,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16672,cg12310172,-0.00000303,0.00000225,-1.345629364,0.179405434,loss,ns,0.0000044,0.00000382,1.150273639,0.250917736,pos,ns,-0.000952798,0.001119738,-0.850911639,0.395475214,neg,ns,0.40288073,0.0000493,0.0000385,1.2810795,0.201123255,pos,ns,0.956120047,Srbd1,Srbd1_Intergenic_downstream,17,85943970,85944019,85944018,85944019,50,-,GCTGTCAGCTTTAATAACATTTTATCAATTGGATACTTATATTATTCACG,Distal Intergenic,17,85984947,86040364,55418,2,Srbd1-206,96394,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,6,78586,ENSMUSG00000024135,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17783,cg08372486,-0.00000494,0.00000218,-2.267236582,0.024064139,loss,ns,-0.00000426,0.0000037,-1.150240162,0.250931499,neg,ns,-0.002749615,0.001084123,-2.536257231,0.011695021,neg,ns,1.931998981,-0.0000244,0.0000373,-0.653393805,0.513986755,neg,ns,0.947750283,Son,Son_Exon,16,91664893,91664942,91664941,91664942,50,-,ATTTGGATTCTGTTTCACTCTTCTTAGGGCCGGGTTAAACGGCAGGGCCG,"Exon (Son-204/Son, exon 7 of 7)",16,91647506,91679207,31702,1,Son-203,17387,Son-203;Son-204;Son-202;Son-208;Son-201;Son-205;Son-212;Son-207,Son;Son;Son;Son;Son;Son;Son;Son,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,31,20658,ENSMUSG00000022961,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4879,cg18313632,-0.00000284,0.00000236,-1.201406961,0.230510434,loss,ns,0.00000461,0.00000401,1.149927694,0.251059987,pos,ns,0.003285839,0.001174484,2.797687712,0.00546897,pos,ns,2.262094455,-0.0000783,0.0000404,-1.937806489,0.053554748,neg,ns,0.080836858,Smim4,Smim4_Exon,14,31128631,31128680,31128679,31128680,50,-,ACAGAAGGTCTCCTGGCCCACGCGCACTTTAATCATGATCCACTCCATCG,Promoter (<=1kb),14,31088132,31128956,40825,2,Smim4-204,276,Nt5dc2-204;Nt5dc2-203;Smim4-204;Smim4-202;Smim4-201;Smim4-203,Nt5dc2;Nt5dc2;Smim4;Smim4;Smim4;Smim4,-2373;-2671;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,66487,ENSMUSG00000058351,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
1426,cg14080371,0.000122626,0.0000131,9.355890469,1.73E-18,gain,yes,-0.0000256,0.0000223,-1.149669852,0.251166047,neg,ns,0.015542168,0.006523422,2.382517752,0.017797273,pos,ns,1.749646534,-0.000433765,0.00022434,-1.93351752,0.054082717,neg,ns,0.100511162,Cadps,Cadps_fiveUTR,14,12823055,12823104,12823055,12823056,50,-,CGCCTCCAGAAAAGATGCCGAGTGTTGCAAGCTGTCGATGCAGCCAAGAG,Promoter (<=1kb),14,12372565,12823079,450515,2,Cadps-202,0,Cadps-210;Cadps-202;Cadps-203;Cadps-204;Cadps-201,Cadps;Cadps;Cadps;Cadps;Cadps,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,34,27062,ENSMUSG00000054423,mapped to different genes,14,12822717,12823224,508,*,508,45,0.667322835,0.834367472,0.088582677,5.95E-32,CpGisland,TRUE,U13,Hc-P
19055,cg20101265,-0.000119758,0.0000273,-4.390832561,0.0000155,loss,ns,-0.0000533,0.0000463,-1.149601293,0.251194254,neg,ns,0.062517572,0.013574834,4.605402329,0.00000602,pos,ns,5.220615665,-0.003043263,0.000466837,-6.518892845,2.87E-10,neg,yes,0.557084821,Cdk12,Cdk12_Intergenic_downstream,11,98290127,98290176,98290175,98290176,50,+,TCTTGGCCTGGCATCAGGGCGGCATGCTAATGTGGAAATTTAAAGAGCCG,Distal Intergenic,11,98263502,98268011,4510,1,Cdk12-204,26625,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,25,69131,ENSMUSG00000003119,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17070,cg01571001,0.000278402,0.0000249,11.17115683,1.41E-24,gain,yes,-0.0000487,0.0000423,-1.149597405,0.251195853,neg,ns,0.041493422,0.012403681,3.3452506,0.000923102,pos,ns,3.034750159,-0.001049696,0.000426562,-2.460831256,0.014406361,neg,ns,0.311868199,Gata2,Gata2_Promoter,6,88190897,88190946,88190897,88190898,50,+,CGACTGGCTATTCATTATCTTCGCCGGGAACAAAGATTAGCCGGCCGAGA,Promoter (2-3kb),6,88193891,88207032,13142,1,Gata2-202,-2945,Gata2-202,Gata2,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,7,12,14461,ENSMUSG00000015053,mapped to different genes,6,88190868,88191058,191,*,191,14,0.628272251,0.759874965,0.073298429,3.77E-09,CpGisland,TRUE,U13,Hc-P
21189,cg23218693,0.000192268,0.0000168,11.4662465,1.31E-25,gain,yes,-0.0000327,0.0000285,-1.149595088,0.251196807,neg,ns,0.024656994,0.008345674,2.954464141,0.003372011,pos,ns,2.472111018,-0.000739208,0.000287007,-2.575572934,0.01047052,neg,ns,0.156156879,Mpped2,Mpped2_fiveUTR,2,106693450,106693499,106693498,106693499,50,-,CCTGGAGCTGTGCTCCTTTGACCCCAGTGGCAGTCCCTGTCACTGCACCG,Promoter (<=1kb),2,106693269,106868356,175088,1,Mpped2-202,181,Mpped2-202;Mpped2-206;Mpped2-201;Mpped2-203;Mpped2-204,Mpped2;Mpped2;Mpped2;Mpped2;Mpped2,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,33,77015,ENSMUSG00000016386,conserved gene but different region,2,106693498,106694592,1095,*,1095,121,0.722374429,0.847642505,0.110502283,2.54E-97,CpGisland,TRUE,U3,Pr-B
26067,cg19718127,0.0000489,0.0000117,4.169226844,0.0000397,gain,ns,0.0000229,0.0000199,1.149317095,0.251311201,pos,ns,0.019902846,0.005843448,3.406010579,0.000746073,pos,ns,3.127218752,-0.000518196,0.000200956,-2.578658864,0.010379441,neg,ns,0.702624747,Sox5,Sox5_Intron,6,143595250,143595299,143595250,143595251,50,+,CGAACTTTACAAAGACTTCCCTAGGAGATTTAAGGTCTGGAAATCAATAG,"Intron (1700060C16Rik-201/1700060C16Rik-201, intron 4 of 4)",6,143861441,143947088,85648,2,Sox5-206,351789,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,71,20678,ENSMUSG00000041540,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14302,cg26320219,-0.000000901,0.00000291,-0.309450689,0.757186611,loss,ns,-0.00000569,0.00000495,-1.149313994,0.251312477,neg,ns,-0.001263366,0.001449148,-0.871798819,0.383992822,neg,ns,0.415676893,-0.00000205,0.0000498,-0.041060607,0.967274012,neg,ns,0.943588637,Cnppd1,Cnppd1_threeUTR,1,75135763,75135812,75135811,75135812,50,-,CAGGCCATGCAACTGAAACTGTTTATTGAAACCTCAGTTCTACAAAAGCG,3' UTR,1,75134554,75142638,8085,2,Cnppd1-202,6826,Cnppd1-202;Cnppd1-208;Cnppd1-205;Cnppd1-201;Cnppd1-203;Cnppd1-204;Cnppd1-206;Cnppd1-207;Slc23a3-201;Slc23a3-202,Cnppd1;Cnppd1;Cnppd1;Cnppd1;Cnppd1;Cnppd1;Cnppd1;Cnppd1;Slc23a3;Slc23a3,0;0;0;0;2049;1994;5991;6899;-1873;-2217,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,69171,ENSMUSG00000033159,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17409,cg11171400,-0.00003,0.0000081,-3.696723612,0.000258196,loss,ns,0.0000158,0.0000138,1.149128155,0.251388971,pos,ns,-0.004633143,0.004033609,-1.148634667,0.251592175,neg,ns,0.59930287,-0.000256641,0.000138715,-1.850126745,0.065246723,neg,ns,0.883352595,Nrxn1,Nrxn1_Exon,17,90162386,90162435,90162386,90162387,50,+,CGCCAATTATTATGGTTGCTTGGCTATTGAAGATTGTGAGCTGACGCCCT,"Exon (Nrxn1-202/Nrxn1, exon 19 of 21)",17,90033631,91088907,1055277,2,Nrxn1-202,926472,Nrxn1-202;Nrxn1-207;Nrxn1-216;Nrxn1-204;Nrxn1-217;Nrxn1-209;Nrxn1-201;Nrxn1-213;Nrxn1-206;Nrxn1-223;Nrxn1-219,Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,22,27,18189,ENSMUSG00000024109,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23889,cg02627247,-0.0000229,0.00000741,-3.090826932,0.002177155,loss,ns,0.0000145,0.0000126,1.149052428,0.251420145,pos,ns,0.013917784,0.003689669,3.772095126,0.00019388,pos,ns,3.712466378,-0.00054953,0.000126887,-4.33084882,0.0000201,neg,ns,0.775967979,Ctnnb1,Ctnnb1_fiveUTR,9,120930091,120930140,120930091,120930092,50,+,CGATGAATTTAGGATTTTGCCGCAGTATACATCTGCAGTCCCAGAATCCT,Promoter (<=1kb),9,120929216,120950635,21420,1,Ctnnb1-203,875,Ctnnb1-203;Ctnnb1-201;Ctnnb1-208;Ctnnb1-209;Ctnnb1-214;Ctnnb1-204;Ctnnb1-207,Ctnnb1;Ctnnb1;Ctnnb1;Ctnnb1;Ctnnb1;Ctnnb1;Ctnnb1,0;0;0;0;0;0;-3678,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,9,12387,ENSMUSG00000006932,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21772,cg14227010,0.0000327,0.00000635,5.139890314,0.000000488,gain,yes,0.0000124,0.0000108,1.148989023,0.25144625,pos,ns,0.006870185,0.003162543,2.172360822,0.030585939,pos,ns,1.514478179,-0.000127223,0.00010876,-1.169761135,0.242995678,neg,ns,0.586544381,Begain,Begain_Exon,12,109035351,109035400,109035351,109035352,50,-,CGTAGGTCTGGCTGCACTGCAGCAGCTGGGCCGCTAGATTGCAGTCCTTC,"Exon (Begain-204/Begain, exon 6 of 7)",12,109032187,109059427,27241,2,Begain-204,24027,Begain-204;Begain-203;Begain-206;Begain-205;Begain-202;Begain-201,Begain;Begain;Begain;Begain;Begain;Begain,0;0;0;0;0;18181,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,380785,ENSMUSG00000040867,conserved gene and region,12,109035178,109035383,206,*,206,13,0.703883495,0.541010101,0.063106796,9.42E-08,CpGisland,TRUE,U11,Tr-P
1084,cg00690028,0.0000017,0.00000207,0.818938194,0.413450784,gain,ns,-0.00000405,0.00000352,-1.14885337,0.251502105,neg,ns,0.002307878,0.001031633,2.237112905,0.02598953,pos,ns,1.585201582,-0.000111337,0.0000355,-3.138223606,0.00186319,neg,ns,0.936858631,Virma,Virma_Exon,4,11527696,11527745,11527744,11527745,50,-,TGGAGCATGCACCTTCATGTTCAAGCAAAGTTGCTCCAAGAAATAGTTCG,"Exon (Virma-202/Virma, exon 14 of 24)",4,11485958,11550684,64727,1,Virma-202,41738,Virma-201;Virma-202;Virma-203,Virma;Virma;Virma,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,Exon,5,5,66185,ENSMUSG00000040720,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20914,cg12335724,0.0000176,0.00000977,1.801568149,0.07258491,gain,ns,-0.0000191,0.0000166,-1.148821972,0.251515034,neg,ns,0.010042614,0.004863857,2.064742956,0.039778678,pos,ns,1.400349654,-0.000313899,0.000167268,-1.876625609,0.061508644,neg,ns,0.2141307,Pax6,Pax6_Intron,2,105686994,105687043,105687042,105687043,50,-,AAGGAGACAGCTGTAGAAATGTTCCACAAGAGACCTCTGGACACGATTCG,"Intron (Pax6-206/Pax6, intron 7 of 12)",2,105668900,105697364,28465,1,Pax6-206,18094,Pax6-206;Pax6-207;Pax6-210;Pax6-214;Pax6-208;Pax6-202;Pax6-205;Pax6-225;Pax6-204;Pax6-201;Pax6-203;Pax6-224;Pax6-219;Pax6-221;Pax6-213;Pax6-211;Pax6-222;Pax6-212;Pax6-215;Pax6-223;Pax6-209;Pax6-216,Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,78,18508,ENSMUSG00000027168,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
12815,cg01871214,0.0000795,0.0000109,7.301723558,2.41E-12,gain,yes,0.0000212,0.0000185,1.148625379,0.251596001,pos,ns,0.011597144,0.005418549,2.140267423,0.033113311,pos,ns,1.479997391,0.0000683,0.000186343,0.366670953,0.714114619,pos,ns,0.142512585,Tmem33,Tmem33_Intergenic_upstream,5,67228764,67228813,67228764,67228765,50,-,CGGGATAATTTTTAATATATATGCAATAAATGTTCACTTTGTTAGATTGA,Distal Intergenic,5,67260565,67291461,30897,1,Tmem33-201,-31801,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,22,22,67878,ENSMUSG00000037720,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
24462,cg22342157,-0.00000212,0.00000117,-1.807721642,0.071618993,loss,ns,-0.00000229,0.000002,-1.148607863,0.251603216,neg,ns,-0.000482897,0.000584794,-0.825755786,0.409577669,neg,ns,0.38766373,0.00000368,0.0000201,0.183067117,0.854865027,pos,ns,0.967807598,Ago1,Ago1_threeUTR,4,126439474,126439523,126439522,126439523,50,+,CTATCCAGTGAGGTAACAGCGTTCTGCCTTCAAGCGAAGTACATGGTGCG,3' UTR,4,126435012,126468421,33410,2,Ago1-207,28898,Ago1-207;Ago1-201;Ago1-206;Ago1-202;Ago1-205;Ago1-204,Ago1;Ago1;Ago1;Ago1;Ago1;Ago1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,11,13,236511,ENSMUSG00000041530,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10462,cg01526505,-0.0000196,0.0000139,-1.40714208,0.160387067,loss,ns,0.0000272,0.0000237,1.148206967,0.251768383,pos,ns,0.004576213,0.006933537,0.660011363,0.50973661,pos,ns,0.292654174,-0.000352807,0.000238444,-1.479622772,0.139989427,neg,ns,0.784942324,Npas3,Npas3_Intron,12,53660553,53660602,53660601,53660602,50,+,AGTGACATACTGTACTGTCTGAAGGGTGTCATATGGTCATCTGTCAGCCG,"Intron (Npas3-204/Npas3, intron 3 of 10)",12,53248157,54069532,821376,1,Npas3-204,412396,Npas3-204;Npas3-201;Npas3-203,Npas3;Npas3;Npas3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,83,103,27386,ENSMUSG00000021010,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3073,cg16066125,0.0000265,0.00000812,3.268989984,0.001200646,gain,ns,0.0000158,0.0000138,1.148200268,0.251771144,pos,ns,-0.000122258,0.004039425,-0.030266125,0.975874288,neg,ns,0.010606124,0.000351274,0.000138915,2.528685071,0.011945012,pos,ns,0.799384895,Lrmda,Lrmda_Intron,14,22545827,22545876,22545827,22545828,50,+,CGACAGTCTAAAGTGCTCAAATTGAGCCATTTTGTTCTCTGTAAAATAAA,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,526115,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206;Lrmda-202,Lrmda;Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17978,cg25055739,0.0000229,0.00000448,5.122854311,0.00000053,gain,yes,-0.00000873,0.0000076,-1.148134063,0.251798427,neg,ns,0.001465737,0.002227856,0.657913934,0.511081686,pos,ns,0.291509681,0.0000796,0.0000766,1.038569149,0.299814537,pos,ns,0.091758066,Car10,Car10_fiveUTR,11,93100192,93100241,93100192,93100193,50,+,CGTCGAGTGATGCACTTGGAATGAGAATCAGAGGATGGAAATAGTCTGGG,5' UTR,11,93098404,93368999,270596,1,Car10-204,1788,Car10-207;Car10-204;Car10-205;Car10-201;Car10-203;Car10-202;Car10-206,Car10;Car10;Car10;Car10;Car10;Car10;Car10,2164;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,7,72605,ENSMUSG00000056158,conserved gene and region,11,93099971,93100196,226,*,226,17,0.601769912,0.845696676,0.075221239,3.41E-11,CpGisland,TRUE,U13,Hc-P
903,cg27124558,-0.0000632,0.0000108,-5.825680458,1.42E-08,loss,yes,0.0000212,0.0000184,1.148075709,0.251822477,pos,ns,0.001666085,0.005399659,0.308553825,0.757868195,pos,ns,0.120406319,-0.000196346,0.000185694,-1.057363791,0.291168847,neg,ns,0.568133667,Gm13220,Gm13220_Intron,2,9594076,9594125,9594124,9594125,50,+,CTGTTTTGATGATGCTTTTGAGTGTTCCCATCACTACCGAGATGCTGCCG,"Intron (Gm13218-201/Gm13218-201, intron 1 of 1)",2,9575836,9576343,508,1,Gm13220-201,18240,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,8,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21813,cg23625246,0.000103385,0.0000131,7.869184356,6.01E-14,gain,yes,-0.0000256,0.0000223,-1.147997585,0.251854678,neg,ns,0.010516539,0.006538903,1.608303265,0.108786697,pos,ns,0.963424208,-0.000513102,0.000224872,-2.281749836,0.02318172,neg,ns,0.327587462,Lmo1,Lmo1_Intergenic_upstream,7,109191620,109191669,109191668,109191669,50,-,CTTTGCTTTTGCCTCTAATTGACAGCATGGAGATAAATGGGCTGGCAGCG,Distal Intergenic,7,109138675,109175207,36533,2,Lmo1-202,-16462,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,34,66,109594,ENSMUSG00000036111,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22856,cg04858567,0.0000947,0.00000641,14.76924522,9.60E-38,gain,yes,-0.0000125,0.0000109,-1.147755077,0.251954651,neg,ns,0.015477248,0.003192023,4.848726508,0.00000197,pos,ns,5.705744258,-0.000505646,0.000109773,-4.606270938,0.00000599,neg,ns,0.121572739,Sox6,Sox6_Exon,7,116034483,116034532,116034483,116034484,50,-,CGGCCATGTCGTAAGTATTCAAAGCATTTCCCGTCGTGCAACATCAGAAA,Promoter (<=1kb),7,115801599,116034513,232915,2,Sox6-208,0,1110004F10Rik-205;Sox6-210;Sox6-202;Sox6-204;Sox6-209;Sox6-214;Sox6-208,1110004F10Rik;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6,-4865;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,57,20679,ENSMUSG00000051910,conserved gene and region,7,116034285,116034518,234,*,234,19,0.636752137,0.811610077,0.081196581,4.56E-13,CpGisland,TRUE,U3,Pr-B
5330,cg21284548,0.00000162,0.00000426,0.379247554,0.704763682,gain,ns,-0.00000831,0.00000724,-1.147562097,0.252034226,neg,ns,-0.003290153,0.002120474,-1.551611837,0.121775408,neg,ns,0.914440408,0.0000886,0.0000729,1.214887153,0.225333664,pos,ns,0.933023164,Zfp148,Zfp148_Exon,16,33496788,33496837,33496836,33496837,50,+,AGCAGGCTTTGGACAGAACTAGCCAAAATGATGCCTATTTGAATAGCCCG,"Exon (Zfp148-202/Zfp148, exon 9 of 9)",16,33380836,33504363,123528,1,Zfp148-202,115952,Zfp148-202;Zfp148-205;Zfp148-201,Zfp148;Zfp148;Zfp148,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,7,22661,ENSMUSG00000022811,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24775,cg10939684,-0.00000192,0.00000145,-1.31958416,0.187947603,loss,ns,0.00000283,0.00000247,1.147283983,0.252148938,pos,ns,0.001949684,0.000722461,2.698669984,0.007343324,pos,ns,2.134107295,-0.000051,0.0000248,-2.05177379,0.041031429,neg,ns,0.965925742,Tial1,Tial1_threeUTR,7,128442404,128442453,128442452,128442453,50,+,CTAAAGGTTCCAAACATTTCAATTTTTAAAATAAATATTTTCATTTTCCG,3' UTR,7,128439777,128461672,21896,2,Tial1-202,19219,Tial1-202;Tial1-208;Tial1-203;Tial1-211;Tial1-206;Tial1-214;Tial1-201;Tial1-204;Tial1-209;Tial1-205;Tial1-210;Tial1-212;Tial1-213,Tial1;Tial1;Tial1;Tial1;Tial1;Tial1;Tial1;Tial1;Tial1;Tial1;Tial1;Tial1;Tial1,0;0;0;0;0;0;0;0;0;0;0;0;6117,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,5,21843,ENSMUSG00000030846,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20268,cg12071536,-0.00000221,0.00000705,-0.313579658,0.754051202,loss,ns,0.0000137,0.000012,1.147251162,0.252162477,pos,ns,-0.000249477,0.00350968,-0.071082636,0.943377823,neg,ns,0.025314337,0.0000328,0.000120698,0.271687243,0.786043355,pos,ns,0.101098527,Hoxc5,Hoxc5_fiveUTR,15,102981603,102981652,102981651,102981652,50,+,GTACATATACAGTTCATACAATAATCTTATGTATGTAAAACCCCGTTACG,5' UTR,15,102967443,103015676,48234,1,Hoxc5-202,14160,Hoxc5-202;Hoxc9-202;Hoxc9-201,Hoxc5;Hoxc9;Hoxc9,0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,13,134,15424,ENSMUSG00000022485,conserved gene and region,15,102981651,102982178,528,*,528,70,0.696969697,1.109010712,0.132575758,6.92E-63,CpGisland,TRUE,U3,Pr-B
2873,cg01993707,0.0000503,0.0000141,3.565027955,0.000421183,gain,ns,0.0000275,0.000024,1.147147978,0.252205048,pos,ns,0.006840145,0.007023818,0.973849943,0.330890331,pos,ns,0.480315923,0.000353556,0.000241549,1.463707003,0.144287257,pos,ns,0.26451201,Otx1,Otx1_fiveUTR,11,21999453,21999502,21999501,21999502,50,+,GGGTTGTTTGAGGTAAGACATCATGCTAACAGCTGGGTGGAGGCGCCCCG,5' UTR,11,21994764,22001615,6852,2,Otx1-201,2113,Otx1-201;Otx1-203;Otx1-202,Otx1;Otx1;Otx1,0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,13,18423,ENSMUSG00000005917,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
8375,cg25509719,-0.0000173,0.00000554,-3.121004635,0.00197207,loss,ns,0.0000108,0.00000942,1.147146396,0.252205701,pos,ns,0.001084103,0.00275934,0.392884693,0.694674674,pos,ns,0.158218534,-0.000155753,0.0000949,-1.641347781,0.101739343,neg,ns,0.894983083,Zeb2,Zeb2_Intron,2,45062972,45063021,45063020,45063021,50,-,TCAAAAAACACTACATGAATGATGTTAGGTTATTAACCCTATCACCACCG,"Intron (Zeb2-212/Zeb2, intron 3 of 10)",2,44983632,45117395,133764,2,Zeb2-212,54374,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13679,cg27664916,-0.0000425,0.0000107,-3.980464205,0.0000857,loss,ns,0.0000208,0.0000181,1.146999902,0.252266148,pos,ns,-0.006435552,0.005314463,-1.210950461,0.226836764,neg,ns,0.644286557,-0.000132735,0.000182764,-0.726267364,0.468222876,neg,ns,0.533503281,Irx1,Irx1_Intergenic_upstream,13,72028560,72028609,72028608,72028609,50,-,TTCATCCTTGTAAAATAGATAACTACTTTATTATTTTTTCCATCAGCTCG,Distal Intergenic,13,71957921,71963723,5803,2,Irx1-201,-64886,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,8,16371,ENSMUSG00000060969,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16447,cg10173633,-0.0000182,0.0000054,-3.364985502,0.000861713,loss,ns,0.0000105,0.00000917,1.146889864,0.252311559,pos,ns,0.016182327,0.002686232,6.024173968,4.81E-09,pos,ns,8.317702153,-0.000340572,0.0000924,-3.686670761,0.000268158,neg,ns,0.925639249,Ric8b,Ric8b_Exon,10,85009411,85009460,85009411,85009412,50,+,CGTTTAGTAAGATCAAATTTCTAAATGATGTTTCGTTCCAGTTGAACATT,"Exon (Ric8b-204/Ric8b, exon 2 of 3)",10,84917616,85016447,98832,1,Ric8b-201,91795,Ric8b-201;Ric8b-202;Ric8b-205;Ric8b-204,Ric8b;Ric8b;Ric8b;Ric8b,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,14,237422,ENSMUSG00000035620,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13433,cg11168555,-0.0000041,0.00000331,-1.239568583,0.216072568,loss,ns,-0.00000644,0.00000562,-1.146821757,0.252339669,neg,ns,-0.002204093,0.001645675,-1.339324434,0.181446198,neg,ns,0.741252129,-0.0000194,0.0000566,-0.342898697,0.731907073,neg,ns,0.907528644,Bmp1,Bmp1_threeUTR,14,70492409,70492458,70492457,70492458,50,-,AAGGACTGGAATGTGAGGCCCACGTGGAAGCCCTCAGACACCTGGATCCG,3' UTR,14,70474558,70520149,45592,2,Bmp1-205,27691,Bmp1-205;Bmp1-201;Bmp1-206;Bmp1-202;Bmp1-204,Bmp1;Bmp1;Bmp1;Bmp1;Bmp1,0;0;0;0;3596,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,12153,ENSMUSG00000022098,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17816,cg21216555,-0.00000631,0.00000661,-0.95551935,0.340059648,loss,ns,-0.0000129,0.0000112,-1.146661394,0.252405864,neg,ns,-0.008185249,0.003289201,-2.488522138,0.013352223,neg,ns,1.87444641,0.000248231,0.000113115,2.194492762,0.028941605,pos,ns,0.831604033,Ambra1,Ambra1_Intron,2,91859456,91859505,91859456,91859457,50,-,CGTGTAGGTGGCCTGTAAGGAAAGTTTTAACAAAAGAGTTGGTTAAGAAG,"Intron (Ambra1-203/Ambra1, intron 12 of 18)",2,91730134,91918849,188716,1,Ambra1-203,129322,Ambra1-203;Ambra1-205;Ambra1-204;Ambra1-202;Ambra1-201,Ambra1;Ambra1;Ambra1;Ambra1;Ambra1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,12,228361,ENSMUSG00000040506,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3963,cg26991209,-0.0000183,0.00000857,-2.131395585,0.033842898,loss,ns,0.0000167,0.0000146,1.146632287,0.25241788,pos,ns,0.003577585,0.004262939,0.839229871,0.401987027,pos,ns,0.395787963,-0.000305515,0.000146602,-2.083970927,0.037981456,neg,ns,0.633502003,Gm7847,Gm7847_Intergenic_upstream,18,25995558,25995607,25995606,25995607,50,+,ATTAGTCAATTATTACTGTACATGCTGAGGATTTGCTATTGACCAGCTCG,Distal Intergenic,18,25823581,25824357,777,2,Gm7847-201,-171201,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,22,665916,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3091,cg07540568,0.0000736,0.0000083,8.870662812,5.89E-17,gain,yes,-0.0000162,0.0000141,-1.146475327,0.252482685,neg,ns,0.008428889,0.004131033,2.04038282,0.04215929,pos,ns,1.375106712,-0.000153403,0.000142066,-1.079803494,0.281069081,neg,ns,0.107738589,Lhfpl3,Lhfpl3_Exon,5,22746216,22746265,22746216,22746217,50,+,CGCCGCGATGCTCCCGGCTCAGGAGGCTGCCAAGCTGTACCACACCAACT,Promoter (<=1kb),5,22746059,23275597,529539,1,Lhfpl3-202,157,Lhfpl3-202,Lhfpl3,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,11,269629,ENSMUSG00000106379,conserved gene but different region,5,22745857,22746231,375,*,375,33,0.712,0.747192368,0.088,1.73E-23,CpGisland,TRUE,U3,Pr-B
18866,cg03719089,0.0000228,0.00000399,5.717477239,2.54E-08,gain,yes,-0.00000778,0.00000679,-1.146446324,0.25249466,neg,ns,0.004398516,0.001987833,2.212719415,0.027645391,pos,ns,1.55837726,-0.000160761,0.0000684,-2.351631701,0.019316838,neg,ns,0.043825985,E130114P18Rik,E130114P18Rik_Intron,4,97775293,97775342,97775341,97775342,50,+,AAAGTCTTACGAAGGGCGCCAAAAGTTACTTAAGATAATATTGCTAACCG,"Intron (Nfia-208/Nfia, intron 1 of 3)",4,97568133,97778048,209916,2,E130114P18Rik-204,2706,E130114P18Rik-204;E130114P18Rik-205;Nfia-208;Nfia-202;Nfia-203;Nfia-205;Nfia-201;Nfia-204,E130114P18Rik;E130114P18Rik;Nfia;Nfia;Nfia;Nfia;Nfia;Nfia,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,24,319865,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
24556,cg06496700,-0.00000109,0.00000303,-0.359460591,0.719495287,loss,ns,-0.00000591,0.00000515,-1.146417694,0.252506483,neg,ns,0.000362692,0.001509139,0.240330629,0.810232803,pos,ns,0.091390178,-0.00012741,0.0000519,-2.454947805,0.01463961,neg,ns,0.929404092,Ank2,Ank2_Exon,3,126963463,126963512,126963463,126963464,50,-,CGTTGGCAGGTGAAGTTTACTGAGTACATCCAAAGCAGCAGTGAAAGAAA,"Exon (Ank2-207/Ank2, exon 28 of 46)",3,126921612,126998462,76851,2,Ank2-201,34950,Ank2-201;Ank2-208;Ank2-207;Ank2-222;Ank2-218;Ank2-220;Ank2-227,Ank2;Ank2;Ank2;Ank2;Ank2;Ank2;Ank2,0;0;0;0;0;0;12642,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,7,109676,ENSMUSG00000032826,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23184,cg05562961,0.000117434,0.000021,5.589676344,4.99E-08,gain,yes,-0.0000409,0.0000357,-1.146379186,0.252522384,neg,ns,0.018040578,0.010456464,1.725303801,0.08546932,pos,ns,1.068189752,-0.000599631,0.000359597,-1.667507374,0.096423385,neg,ns,0.437457455,Rnf220,Rnf220_Intron,4,117391674,117391723,117391722,117391723,50,-,GTAAAACGTCAAGGGCAGTAATGCGATTAGCGGTCTCAAATGAAATATCG,"Intron (Rnf220-201/Rnf220, intron 2 of 14)",4,117271463,117497052,225590,2,Rnf220-201,105329,Rnf220-201;Rnf220-207,Rnf220;Rnf220,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7209,cg24280720,-0.00000295,0.00000323,-0.91235506,0.362290798,loss,ns,0.0000063,0.00000549,1.146302419,0.252554087,pos,ns,-0.000795923,0.001608951,-0.49468435,0.621173347,neg,ns,0.206787187,-0.0000742,0.0000553,-1.341828729,0.180633551,neg,ns,0.943572397,Gria3,Gria3_Exon,X,41654801,41654850,41654801,41654802,50,-,CGTTTCAAGAAATGCTGTTAACCTGGCAGTATTAAAACTGAATGAGCAAG,"Exon (Gria3-202/Gria3, exon 15 of 17)",20,41401128,41676585,275458,1,Gria3-202,253673,Gria3-202;Gria3-201;Gria3-208;Gria3-206;Gria3-209,Gria3;Gria3;Gria3;Gria3;Gria3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,26,53623,ENSMUSG00000001986,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22799,cg19101454,0.00000382,0.00000138,2.762077753,0.006086244,gain,ns,0.00000269,0.00000235,1.146269571,0.252567653,pos,ns,0.000700419,0.000687949,1.018126394,0.309411813,pos,ns,0.50946311,-0.0000201,0.0000237,-0.850834229,0.395518153,neg,ns,0.015538478,Dmbx1,Dmbx1_Intergenic_upstream,4,115963189,115963238,115963189,115963190,50,+,CGGCCGCCGCTCCCCGAGGGGCCGCCAGATTGTTCCCTTCATAATTGATT,Distal Intergenic,4,115915120,115939926,24807,2,Dmbx1-202,-23263,Faah-202,Faah,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,15,42,140477,ENSMUSG00000028707,mapped to different genes,4,115962737,115963443,707,*,707,80,0.684582744,0.96711865,0.113154173,1.72E-65,CpGisland,TRUE,U3,Pr-B
16618,cg06033125,-0.0000256,0.00000789,-3.239422222,0.001327734,loss,ns,-0.0000154,0.0000134,-1.146257472,0.252572651,neg,ns,-0.002083732,0.003929206,-0.5303188,0.596270571,neg,ns,0.224556624,-0.000177013,0.000135125,-1.309994782,0.191167489,neg,ns,0.893113892,Btbd11,Btbd11_Exon,10,85631277,85631326,85631325,85631326,50,-,TTCTCTGGGCTTGCAGGAAATTTTGAGCTGGTTAGTTTGCTGTTGGAGCG,"Exon (Btbd11-203/Btbd11, exon 9 of 17)",10,85386814,85660292,273479,1,Btbd11-203,244463,Btbd11-203;Btbd11-201;Btbd11-202;Btbd11-206,Btbd11;Btbd11;Btbd11;Btbd11,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,13,13,74007,ENSMUSG00000020042,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8813,cg00067370,0.000069,0.0000214,3.22322218,0.001402547,gain,ns,0.0000417,0.0000364,1.146076896,0.252647238,pos,ns,0.069154251,0.010650471,6.493069846,3.34E-10,pos,ns,9.476499923,-0.002095988,0.000366269,-5.722540167,2.47E-08,neg,yes,0.612227262,Gm13466,Gm13466_Intergenic_downstream,2,45836875,45836924,45836875,45836876,50,+,CGTTAACCTGAATCAGATATGAATTCTGTTATTGCAAGGTAGAGCAGCTT,Distal Intergenic,2,45809472,45810470,999,1,Gm13466-201,27403,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,9,666604,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21323,cg23774467,-0.000000516,0.00000357,-0.144533206,0.885173355,loss,ns,-0.00000695,0.00000606,-1.145951593,0.252699005,neg,ns,-0.002225292,0.001776397,-1.252699466,0.211259244,neg,ns,0.675184278,0.0000972,0.0000611,1.591418732,0.112534554,pos,ns,0.913956701,Nfat5,Nfat5_threeUTR,8,107339165,107339214,107339213,107339214,50,+,ATGAGCACCAGTTCCTACAATGATAACACTGAGGTACCTCGTAAATCACG,3' UTR,8,107293470,107372227,78758,1,Nfat5-213,45695,Nfat5-213;Nfat5-214;Nfat5-206;Nfat5-211;Nfat5-203;Nfat5-201;Nfat5-209;Nfat5-205;Nfat5-202;Nfat5-207,Nfat5;Nfat5;Nfat5;Nfat5;Nfat5;Nfat5;Nfat5;Nfat5;Nfat5;Nfat5,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,13,17,54446,ENSMUSG00000003847,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11763,cg24333845,-0.00000511,0.0000017,-3.002432542,0.002896202,loss,ns,-0.00000331,0.00000289,-1.145949345,0.252699933,neg,ns,-0.000552064,0.000847019,-0.651772374,0.515030942,neg,ns,0.288166679,-0.0000273,0.0000291,-0.936704249,0.349639863,neg,ns,0.041607154,Mbnl1,Mbnl1_Exon,3,60528239,60528288,60528287,60528288,50,-,GGTTTAGTCCACTAACTGCATGTTGGGTAAATTCAAAACCCACATGCTCG,"Exon (Mbnl1-208/Mbnl1, exon 1 of 2)",3,60472830,60595764,122935,1,Mbnl1-222,55409,Mbnl1-222;Mbnl1-221;Mbnl1-216;Mbnl1-220;Mbnl1-211;Mbnl1-204;Mbnl1-201;Mbnl1-209;Mbnl1-202;Mbnl1-225;Mbnl1-217;Mbnl1-203;Mbnl1-218;Mbnl1-208;Mbnl1-219;Mbnl1-214;Mbnl1-207;Mbnl1-205;Mbnl1-212,Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,19,36,56758,ENSMUSG00000027763,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
26537,cg26147841,0.0000166,0.00000663,2.503742308,0.012802489,gain,ns,-0.0000129,0.0000113,-1.145867533,0.252733736,neg,ns,-0.004329941,0.003299303,-1.312380484,0.190362641,neg,ns,0.72041828,0.00032187,0.000113463,2.836789095,0.00485703,pos,ns,0.635546107,Casz1,Casz1_Intron,4,148893540,148893589,148893588,148893589,50,+,CCCTAATTGATTGCATTAACCTTTCAGCGTATTGGATTTCCCCGGCATCG,"Intron (Casz1-201/Casz1, intron 3 of 15)",4,148804429,148945129,140701,1,Casz1-201,89111,Casz1-201;Casz1-202;Casz1-205,Casz1;Casz1;Casz1,0;0;4159,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,94,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
23195,cg17170462,-0.0000268,0.00000769,-3.487660135,0.000557726,loss,ns,-0.000015,0.0000131,-1.145844013,0.252743455,neg,ns,-0.010412662,0.003827341,-2.720599285,0.006884284,neg,ns,2.162141238,0.000282282,0.000131622,2.144639939,0.032758736,pos,ns,0.55710529,Rnf220,Rnf220_Intron,4,117427159,117427208,117427159,117427160,50,-,CGTGATTTTCTCTGACTTTGAAGCTCTGGCCCCTGCTGGAGCCTCTGAGC,"Intron (Rnf220-201/Rnf220, intron 2 of 14)",4,117271463,117497052,225590,2,Rnf220-201,69844,Rnf220-201;Rnf220-207,Rnf220;Rnf220,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7552,cg18994927,0.0000253,0.00000909,2.780132963,0.005765798,gain,ns,0.0000177,0.0000154,1.145728327,0.25279126,pos,ns,0.006001835,0.004522606,1.327074604,0.185460599,pos,ns,0.731748343,0.0000109,0.000155532,0.070105205,0.944155125,pos,ns,0.253903144,Sobp,Sobp_Intron,10,43172093,43172142,43172141,43172142,50,+,CAGACAAACATCTGTTATACTGCAGAAGGACAACTATCTCCCAAACCACG,"Intron (Sobp-201/Sobp, intron 1 of 6)",10,43002500,43174530,172031,2,Sobp-201,2388,Sobp-201;Sobp-202,Sobp;Sobp,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,19,109205,ENSMUSG00000038248,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
25946,cg19528122,0.00000812,0.00000463,1.752506051,0.080675434,gain,ns,-0.00000902,0.00000787,-1.145712008,0.252798004,neg,ns,0.002655246,0.002305978,1.151461604,0.25042968,pos,ns,0.601314202,-0.000165428,0.0000793,-2.086043452,0.037791947,neg,ns,0.922933784,Spen,Spen_Intron,4,141520879,141520928,141520879,141520880,50,+,CGACCTATAATCCCAATTAAATCTAGGGAGAGAATTGTGAACATAACTTC,"Intron (Spen-201/Spen, intron 2 of 14)",4,141467890,141538449,70560,2,Spen-201,17521,Spen-201;Spen-202;Spen-203;Spen-205,Spen;Spen;Spen;Spen,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,19,56381,ENSMUSG00000040761,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17802,cg05297954,-0.00000905,0.0000052,-1.741056849,0.082665709,loss,ns,0.0000101,0.00000883,1.145695053,0.252805011,pos,ns,0.000787154,0.002586566,0.304323758,0.76108543,pos,ns,0.118566592,-0.000200512,0.000089,-2.254167742,0.024883635,neg,ns,0.830417485,Ambra1,Ambra1_Intron,2,91792344,91792393,91792344,91792345,50,-,CGGGGGAGGAGAGTGGAAATTGCAGTTTCTCTACTAATTGTACTTTAGGT,"Intron (Ambra1-203/Ambra1, intron 8 of 18)",2,91730134,91918849,188716,1,Ambra1-203,62210,Ambra1-203;Ambra1-205;Ambra1-206;Ambra1-209;Ambra1-204;Ambra1-202;Ambra1-201;Ambra1-207,Ambra1;Ambra1;Ambra1;Ambra1;Ambra1;Ambra1;Ambra1;Ambra1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,12,228361,ENSMUSG00000040506,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17720,cg06497904,-0.000000475,0.000000447,-1.061710619,0.289193497,loss,ns,-0.00000087,0.00000076,-1.145645855,0.252825344,neg,ns,0.0000893,0.000222574,0.401354468,0.688435689,pos,ns,0.162136623,-0.0000146,0.00000765,-1.901948419,0.058104664,neg,ns,0.010819254,Ssbp2,Ssbp2_fiveUTR,13,91461176,91461225,91461224,91461225,50,-,TCGGCACAAGCATGTACGGCAAAGGCAAGAGTAACAGCAGCGCCGTCCCG,Promoter (<=1kb),13,91461181,91524866,63686,1,Ssbp2-207,0,Ssbp2-209;Ssbp2-201;Ssbp2-202;Ssbp2-206;Ssbp2-204;Ssbp2-208;Ssbp2-210;Ssbp2-207,Ssbp2;Ssbp2;Ssbp2;Ssbp2;Ssbp2;Ssbp2;Ssbp2;Ssbp2,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,6,18,66970,ENSMUSG00000003992,conserved gene and region,13,91460857,91462307,1451,*,1451,185,0.749138525,0.979940131,0.127498277,1.56E-161,CpGisland,TRUE,U1,Pr-A
26370,cg18975443,0.0000231,0.0000145,1.595925949,0.111524219,gain,ns,-0.0000282,0.0000246,-1.145441384,0.252909863,neg,ns,-0.016065916,0.00720224,-2.230683359,0.026417393,neg,ns,1.57811005,0.000778751,0.000247684,3.144125103,0.001827169,pos,ns,0.610946945,Nkx2-2,Nkx2-2_Intron,2,147180814,147180863,147180814,147180815,50,+,CGGGTCCCTCCTCGCGCTCCCTCGGCCCAGCTGGCCATATGGAATCCAGC,"Intron (Nkx2-2-203/Nkx2-2, intron 2 of 2)",2,147177546,147186101,8556,2,Nkx2-2-203,5238,Nkx2-2-203;Nkx2-2-201,Nkx2-2;Nkx2-2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,30,18088,ENSMUSG00000027434,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
27161,cg21009405,0.0000103,0.00000311,3.297523184,0.001088797,gain,ns,0.00000605,0.00000528,1.145173711,0.253020535,pos,ns,0.001220901,0.001548072,0.788659288,0.430913868,pos,ns,0.365609529,-0.0000121,0.0000532,-0.226775119,0.820748078,neg,ns,0.9646621,Tnr,Tnr_Exon,1,159858166,159858215,159858214,159858215,50,+,CCTCCCGGTAGTTGCCCCTCCAGAGGACTTGCGAGTGGCTGGTATCAGCG,"Exon (Tnr-202/Tnr, exon 5 of 23)",1,159523769,159931729,407961,1,Tnr-202,334397,Tnr-202;Tnr-201;Tnr-203,Tnr;Tnr;Tnr,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,13,21960,ENSMUSG00000015829,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19056,cg09060651,-0.000158103,0.0000272,-5.816441957,0.000000015,loss,yes,-0.0000529,0.0000462,-1.145131287,0.253038079,neg,ns,0.060156534,0.013528774,4.446562167,0.0000122,pos,ns,4.914668487,-0.003117746,0.000465253,-6.701177985,9.75E-11,neg,yes,0.353375718,Cdk12,Cdk12_Intergenic_downstream,11,98290142,98290191,98290190,98290191,50,+,AGGGCGGCATGCTAATGTGGAAATTTAAAGAGCCGCTCGGCTTTAAATCG,Distal Intergenic,11,98263502,98268011,4510,1,Cdk12-204,26640,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,25,69131,ENSMUSG00000003119,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15044,cg04147618,0.0000903,0.00000919,9.829308102,5.03E-20,gain,yes,-0.0000179,0.0000156,-1.145051318,0.253071151,neg,ns,0.008950607,0.004573939,1.956870571,0.051260029,pos,ns,1.290221148,0.0000729,0.000157297,0.463506962,0.643326286,pos,ns,0.339976256,Ntrk3,Ntrk3_Intron,7,78604114,78604163,78604162,78604163,50,+,TCTAATGCATCCCTCTCACCTCAGGGTTACTAATGAGGTCAGAGGGAACG,"Intron (Ntrk3-210/Ntrk3, intron 1 of 3)",7,78516750,78623342,106593,2,Ntrk3-210,19179,Ntrk3-210;Ntrk3-212;Ntrk3-218;Ntrk3-219;Ntrk3-217,Ntrk3;Ntrk3;Ntrk3;Ntrk3;Ntrk3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,15,18213,ENSMUSG00000059146,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17692,cg05114223,0.00000807,0.00000622,1.298375679,0.195123341,gain,ns,0.0000121,0.0000106,1.144892964,0.25313665,pos,ns,0.003454942,0.00309423,1.116575933,0.265040379,pos,ns,0.576687956,-0.0000337,0.00010641,-0.316530326,0.751813048,neg,ns,0.105272837,Zic4,Zic4_threeUTR,9,91386863,91386912,91386863,91386864,50,-,CGATCATAATAAAAATGGATAATAATGTGAAGGAAGAAAAGAGCCGCTTG,3' UTR,9,91368970,91387793,18824,1,Zic4-204,17893,Zic4-204;Zic4-209;Zic4-205;Zic4-201;Zic4-202,Zic4;Zic4;Zic4;Zic4;Zic4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,18,55,22774,ENSMUSG00000036972,conserved gene and region,9,91386798,91386995,198,*,198,14,0.454545455,1.386,0.070707071,6.05E-09,CpGisland,TRUE,U13,Hc-P
9223,cg22457719,0.00000278,0.00000216,1.29174472,0.19740779,gain,ns,-0.00000419,0.00000366,-1.144786888,0.253180532,neg,ns,0.000785853,0.001073003,0.732387038,0.46448573,pos,ns,0.333027624,-0.0000356,0.0000369,-0.963600843,0.335997141,neg,ns,0.944766669,Gm20517,Gm20517_threeUTR,17,47679748,47679797,47679796,47679797,50,-,GGACATGCTCTCCTCTCTTGACAAAGAGACCTTTGCCTATGATCTCTCCG,3' UTR,17,47611613,47683861,72249,1,Gm20517-202,68135,Gm20517-202;Usp49-201;Usp49-204;Usp49-202,Gm20517;Usp49;Usp49;Usp49,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,6,112694759,ENSMUSG00000023984,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12434,cg26050393,-0.0000229,0.00000727,-3.148206107,0.001802637,loss,ns,-0.0000141,0.0000123,-1.144376987,0.253350151,neg,ns,-0.007367892,0.00361755,-2.036707343,0.042528791,neg,ns,1.371316958,-0.0000625,0.000124407,-0.502482024,0.615685247,neg,ns,0.793664893,Slitrk4,Slitrk4_Exon,X,64272644,64272693,64272692,64272693,50,+,TCAGCCTGGAGATACTCCAAGTTCTCTATGCCAAGGAAAGTGTCAGCTCG,"Exon (Slitrk4-201/Slitrk4, exon 3 of 3)",20,64264885,64276996,12112,2,Slitrk4-201,4303,Slitrk4-201;Slitrk4-202;Slitrk4-203,Slitrk4;Slitrk4;Slitrk4,0;0;3129,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,245446,ENSMUSG00000046699,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13830,cg05519487,0.00000954,0.00000714,1.336219154,0.182457647,gain,ns,0.0000139,0.0000121,1.144365233,0.253355016,pos,ns,-0.000114582,0.003554245,-0.032237997,0.974303001,neg,ns,0.01130596,0.000128262,0.00012223,1.049348014,0.294835352,pos,ns,0.402127047,Six1,Six1_Intron,12,73050237,73050286,73050285,73050286,50,-,GTTCTGAAAAATAGATCACGTTTCGTTATCTTTAGTGGGAATCTGCAACG,"Intron (Six1-203/Six1, intron 1 of 1)",12,73043531,73053887,10357,2,Six1-203,3601,Six1-201;Six1-203;Six1-202,Six1;Six1;Six1,0;0;-4946,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,18,20471,ENSMUSG00000051367,conserved gene and region,12,73050255,73050304,50,*,50,8,0.56,2.040816327,0.16,4.61E-08,CpGisland,TRUE,U13,Hc-P
20395,cg03263373,-0.00000542,0.00000678,-0.799891803,0.424386001,loss,ns,0.0000132,0.0000115,1.144351475,0.25336071,pos,ns,0.00143249,0.003375549,0.424372361,0.671588629,pos,ns,0.172896666,-0.0000762,0.000116085,-0.656391827,0.512058975,neg,ns,0.795727172,Csde1,Csde1_fiveUTR,3,103028970,103029019,103029018,103029019,50,-,CGCTGCTAGTAGTCTTTGTTTTCTTCAGTGCTGTACTGTGAGATTGCCCG,Promoter (<=1kb),3,103029002,103042757,13756,1,Csde1-212,0,Csde1-201;Csde1-211;Csde1-207;Csde1-214;Csde1-215;Csde1-216;Csde1-206;Csde1-212;Csde1-203;Csde1-213,Csde1;Csde1;Csde1;Csde1;Csde1;Csde1;Csde1;Csde1;Csde1;Csde1,0;0;0;0;0;0;0;0;-76;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,10,229663,ENSMUSG00000068823,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22007,cg20628818,0.0000011,0.00000127,0.866549925,0.386858858,gain,ns,-0.00000246,0.00000215,-1.144287578,0.253387159,neg,ns,-0.000161176,0.000630937,-0.255455567,0.798540666,neg,ns,0.097702963,-0.00000433,0.0000217,-0.199704839,0.841842362,neg,ns,0.968228007,Dhx30,Dhx30_Exon,9,110107914,110107963,110107962,110107963,50,-,ACATCTGACACTCTCAGAGCCACTCACCTGCCATGTTGGAAATGTTAACG,"Exon (Dhx30-204/Dhx30, exon 5 of 23)",9,110084320,110117422,33103,2,Dhx30-215,9459,Dhx30-215;Dhx30-219;Dhx30-212;Dhx30-214;Dhx30-203;Dhx30-204;Dhx30-202;Dhx30-224;Dhx30-223;Dhx30-222;Dhx30-207;Dhx30-225;Dhx30-210,Dhx30;Dhx30;Dhx30;Dhx30;Dhx30;Dhx30;Dhx30;Dhx30;Dhx30;Dhx30;Dhx30;Dhx30;Dhx30,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,6,72831,ENSMUSG00000032480,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5687,cg06008935,0.000000681,0.00000219,0.310891095,0.756092353,gain,ns,-0.00000426,0.00000372,-1.144034114,0.253492094,neg,ns,-0.001793218,0.001090152,-1.644924921,0.100998875,neg,ns,0.995683462,0.0000624,0.0000375,1.663356015,0.097251769,pos,ns,0.941713059,Sox2,Sox2_Intron,3,34560162,34560211,34560162,34560163,50,+,CGTATTGTCTATTCTGTTCCGCTATGTGAAAAATGTTGAATATCAACAAT,"Intron (Sox2ot-204/Sox2ot-204, intron 3 of 3)",3,34650405,34652461,2057,1,Sox2-201,-90194,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,34,62,20674,ENSMUSG00000074637,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24324,cg21376378,0.000115519,0.00000752,15.35277073,5.87E-40,gain,yes,-0.0000146,0.0000128,-1.143973279,0.253517285,neg,ns,-0.000143799,0.003744918,-0.038398512,0.969394663,neg,ns,0.013499376,0.000366605,0.000128787,2.846588682,0.004713756,pos,ns,0.191742786,Pou3f1,Pou3f1_threeUTR,4,124659645,124659694,124659693,124659694,50,-,TATTTATTCGTGGAGCCTCTCGGCTCCTGGGGTCCTTCTAACTCCGCCCG,3' UTR,4,124656807,124660655,3849,1,Pou3f1-201,2838,Pou3f1-201,Pou3f1,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,85,18991,ENSMUSG00000090125,conserved gene and region,4,124659224,124659760,537,*,537,47,0.648044693,0.8390625,0.087523278,4.32E-33,CpGisland,TRUE,U3,Pr-B
9704,cg11328550,0.000101106,0.0000105,9.603173319,2.76E-19,gain,yes,-0.0000205,0.0000179,-1.143946682,0.253528299,neg,ns,0.016645606,0.005240078,3.176595307,0.001640222,pos,ns,2.785097332,-0.000312134,0.000180206,-1.732094809,0.084251376,neg,ns,0.184963937,Gm7481,Gm7481_Intron,12,50120841,50120890,50120889,50120890,50,+,TTCTGGTTTTCACAGTTATAACAATGCCTGCGCGTCTTTCTCAGATTACG,"Intron (Gm40418-201/Gm40418-201, intron 1 of 2)",12,49840757,49841751,995,2,Gm7481-201,-279090,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,37,665077,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14241,cg03521793,0.0000566,0.00000836,6.766865091,6.58E-11,gain,yes,-0.0000162,0.0000142,-1.143930795,0.253534878,neg,ns,0.013468246,0.004160183,3.237417033,0.00133679,pos,ns,2.873936965,0.001004566,0.000143068,7.021579867,1.39E-11,pos,yes,0.072379224,Onecut1,Onecut1_Intron,9,74868838,74868887,74868886,74868887,50,-,CAGGGGTTGGATCATTAAGCTAAAACGTTCAATTCAGTCCCTTTGATCCG,"Intron (Gm20649-201/Gm20649-201, intron 2 of 2)",9,74861921,74891781,29861,1,Onecut1-201,6917,Onecut1-201;Onecut1-202,Onecut1;Onecut1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,28,15379,ENSMUSG00000043013,conserved gene and region,9,74868659,74869003,345,*,345,19,0.457971015,1.056406124,0.055072464,4.57E-10,CpGisland,TRUE,NA,NRS
16493,cg17401706,-0.0000148,0.0000049,-3.013783289,0.002793018,loss,ns,0.00000951,0.00000832,1.143879288,0.253556208,pos,ns,-0.004964181,0.002436845,-2.037134212,0.042485737,neg,ns,1.371756845,0.00000506,0.0000838,0.060365097,0.951903753,pos,ns,0.869124498,Lrrc55,Lrrc55_Exon,2,85196165,85196214,85196213,85196214,50,-,GAAAGGCCTGGGGATGCACCCTCCGCAGCCAGGGGTTGTGGCTCAGGTCG,Promoter (<=1kb),2,85162334,85196699,34366,2,Lrrc55-201,485,Lrrc55-201;Lrrc55-204;Lrrc55-202;Lrrc55-203,Lrrc55;Lrrc55;Lrrc55;Lrrc55,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,241528,ENSMUSG00000075224,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25249,cg13895665,0.0000236,0.00000246,9.582393722,3.22E-19,gain,yes,-0.00000479,0.00000418,-1.14384329,0.253571116,neg,ns,-0.000664768,0.001225699,-0.542358626,0.58796114,neg,ns,0.230651377,0.000195534,0.0000422,4.638814976,0.00000518,pos,ns,0.063115758,Cxxc4,Cxxc4_Exon,3,134240237,134240286,134240285,134240286,50,+,ATACTAATTTCCTCTCCACCTTATCCCCTGAACACTGCAGACCTTTGGCG,"Exon (Cxxc4-203/Cxxc4, exon 3 of 4)",3,134236484,134259620,23137,1,Cxxc4-204,3753,Cxxc4-204;Cxxc4-203;Cxxc4-202;Cxxc4-201;Cxxc4-205,Cxxc4;Cxxc4;Cxxc4;Cxxc4;Cxxc4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,18,20,319478,ENSMUSG00000044365,mapped to different genes,3,134240265,134240649,385,*,385,21,0.587012987,0.63362069,0.054545455,5.57E-11,CpGisland,TRUE,U3,Pr-B
8201,cg21861112,-0.0000103,0.00000448,-2.29444827,0.022432936,loss,ns,0.00000871,0.00000761,1.143815221,0.253582741,pos,ns,-0.002374026,0.002230915,-1.064148838,0.288089466,neg,ns,0.540472622,0.0000367,0.0000767,0.478480779,0.632645329,pos,ns,0.90181846,Kmt2a,Kmt2a_Exon,9,44846897,44846946,44846945,44846946,50,-,GGTAAGGCACTCAGGGTGGGCATGTCATCAGGAAACACAGCTCGTTTTCG,"Exon (Kmt2a-201/Kmt2a, exon 4 of 36)",9,44803355,44881296,77942,2,Kmt2a-201,34350,Kmt2a-201;Kmt2a-202;Kmt2a-205;Kmt2a-203;Kmt2a-206,Kmt2a;Kmt2a;Kmt2a;Kmt2a;Kmt2a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,10,214162,ENSMUSG00000002028,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7728,cg14337931,-0.00000236,0.00000209,-1.129483623,0.259567096,loss,ns,0.00000407,0.00000355,1.143749334,0.253610031,pos,ns,0.000768387,0.001041433,0.737817461,0.461183509,pos,ns,0.336126231,-0.0000337,0.0000358,-0.941203556,0.347333402,neg,ns,0.953352154,Arhgap15,Arhgap15_Intron,2,43986710,43986759,43986710,43986711,50,+,CGCCTGGAACGACTTTGCTTCTGTGCACTGAATGTTAATTTTGCAAAACA,"Intron (Arhgap15-203/Arhgap15, intron 6 of 14)",2,43748824,44395953,647130,1,Arhgap15-203,237886,Arhgap15-203;Arhgap15-202;Arhgap15-201,Arhgap15;Arhgap15;Arhgap15,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,72,78,76117,ENSMUSG00000049744,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15097,cg12010312,0.00000319,0.00000587,0.543560917,0.587134327,gain,ns,0.0000114,0.00000998,1.143721237,0.253621669,pos,ns,0.008189504,0.002923183,2.801570407,0.00540522,pos,ns,2.267186616,-0.000283982,0.000100528,-2.824898552,0.005036186,neg,ns,0.863561908,Gm14465,Gm14465_Intergenic_downstream,2,79152452,79152501,79152500,79152501,50,-,GGTTCTCCTACTTTCTGTGCATGACTGTGAAGTAATCACAAATAATCACG,Distal Intergenic,2,79161029,79161595,567,2,Gm14465-201,9143,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,2,100040526,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27227,cg01276922,-0.00000253,0.00000176,-1.43365134,0.152679615,loss,ns,0.00000343,0.000003,1.143663895,0.253645421,pos,ns,0.001966834,0.000877638,2.241054564,0.025730214,pos,ns,1.589556605,-0.000076,0.0000302,-2.51786448,0.012310511,neg,ns,0.956164373,Chd6,Chd6_Exon,2,161029189,161029238,161029237,161029238,50,+,TGTGCTTCATCTGGGCTTGTTTATTCCTAAATCGCTTGATCTTCTGTGCG,"Exon (Chd6-201/Chd6, exon 8 of 37)",2,160946978,161109022,162045,2,Chd6-201,79784,Chd6-201;Chd6-204;Chd6-207;Chd6-210;Chd6-203,Chd6;Chd6;Chd6;Chd6;Chd6,0;0;0;0;23340,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,8,71389,ENSMUSG00000057133,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5172,cg07938388,0.0000052,0.00000733,0.709947286,0.478270508,gain,ns,0.0000142,0.0000124,1.143136583,0.253863921,pos,ns,0.002999219,0.003647417,0.822285762,0.411546294,pos,ns,0.385581305,-0.0000915,0.000125434,-0.729650445,0.46615484,neg,ns,0.131140269,Prrxl1,Prrxl1_Promoter,14,32598682,32598731,32598730,32598731,50,-,CCATTAGACTTGCTTTTTTTGCAGTTTATGTGATTTGATCCAATCCCGCG,Promoter (<=1kb),14,32599407,32649204,49798,1,Prrxl1-203,-725,Prrxl1-203;Prrxl1-204;Prrxl1-202;Prrxl1-201;Prrxl1-205,Prrxl1;Prrxl1;Prrxl1;Prrxl1;Prrxl1,0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,14,23,107751,ENSMUSG00000041730,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
11578,cg21552156,-0.0000301,0.000017,-1.773358656,0.077151056,loss,ns,0.000033,0.0000289,1.142923128,0.253952406,pos,ns,-0.0047524,0.008461687,-0.561637397,0.574768901,neg,ns,0.240506738,0.000130939,0.000290997,0.44996587,0.653049534,pos,ns,0.676471098,Fgf13,Fgf13_Exon,X,59250822,59250871,59250870,59250871,50,+,TGGTGTACTTGCTTCAGCGGGCAGCAGAAGATTTCGTGACACTTAGCACG,"Exon (Fgf13-205/Fgf13, exon 2 of 3)",20,59062145,59568071,505927,2,Fgf13-203,317200,Fgf13-203;Fgf13-205;Fgf13-206;Fgf13-208,Fgf13;Fgf13;Fgf13;Fgf13,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,9,14168,ENSMUSG00000031137,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19957,cg06668033,0.0000107,0.00000279,3.850120396,0.00014342,gain,ns,0.00000542,0.00000474,1.142880409,0.253970117,pos,ns,-0.000188889,0.001389416,-0.135948536,0.891950203,neg,ns,0.049659391,0.0000207,0.0000478,0.432924241,0.665370854,pos,ns,0.946831609,Fbln5,Fbln5_Exon,12,101750757,101750806,101750757,101750758,50,+,CGACACATATATCCGCAGTCGGATCACGGAGCTGCCTCTGAAGTTGATGA,"Exon (Fbln5-201/Fbln5, exon 11 of 11)",12,101746565,101819055,72491,2,Fbln5-201,68249,Fbln5-201;Fbln5-203,Fbln5;Fbln5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,23876,ENSMUSG00000021186,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16478,cg22247803,-0.00000739,0.00000282,-2.617941323,0.009280424,loss,ns,-0.00000548,0.00000479,-1.142594671,0.254088607,neg,ns,-0.00108548,0.00140439,-0.772919783,0.440158775,neg,ns,0.356390636,0.0000639,0.0000483,1.324060818,0.18645829,pos,ns,0.959317466,Dmd,Dmd_Exon,X,85144083,85144132,85144083,85144084,50,+,CGAACCAAAAGGTATTTTGCGAAGCATCCCCGAATGGGCTACCTGCCAGT,"Exon (Dmd-203/Dmd, exon 70 of 79)",20,82948903,85206141,2257239,1,Dmd-203,2195180,Dmd-203;Dmd-215;Dmd-210;Dmd-207;Dmd-214;Dmd-212;Dmd-202;Dmd-201,Dmd;Dmd;Dmd;Dmd;Dmd;Dmd;Dmd;Dmd,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,20,28,13405,ENSMUSG00000045103,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2717,cg07863286,0.0000151,0.0000058,2.596035787,0.009879679,gain,ns,0.0000113,0.00000985,1.142578734,0.254095217,pos,ns,0.004421625,0.002886993,1.531567606,0.126648995,pos,ns,0.897398254,-0.000148021,0.0000993,-1.490888669,0.137007537,neg,ns,0.861934844,Klhl14,Klhl14_Intron,18,21575768,21575817,21575816,21575817,50,-,GATTTATCCTCAAATGCACTGGGCCTTATTTTATTGAGTGAACATGACCG,"Intron (Klhl14-201/Klhl14, intron 2 of 7)",18,21550377,21652368,101992,2,Klhl14-201,76551,Klhl14-201;Klhl14-202,Klhl14;Klhl14,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,38,225266,ENSMUSG00000042514,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12596,cg25771548,-0.00000458,0.000000948,-4.833668473,0.00000211,loss,ns,0.00000184,0.00000161,1.14241314,0.254163904,pos,ns,0.0000604,0.000472066,0.128004358,0.898228522,pos,ns,0.046613159,0.00000224,0.0000162,0.138056597,0.890285319,pos,ns,0.974592894,Oaz2,Oaz2_threeUTR,9,65689091,65689140,65689139,65689140,50,-,GCAGCTCCACTCCTGAAGACCTTCAGCTTCTTGGGCTTTGAGATTGTACG,3' UTR,9,65676548,65690300,13753,1,Oaz2-201,12543,Oaz2-203;Oaz2-207;Oaz2-201;Oaz2-206;Oaz2-205;Oaz2-204;Oaz2-202;Zfp609-201,Oaz2;Oaz2;Oaz2;Oaz2;Oaz2;Oaz2;Oaz2;Zfp609,21090;19379;0;0;12512;12500;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,TRUE,FALSE,threeUTR,1,1,18247,ENSMUSG00000040652,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12225,cg15899178,0.000000791,0.00000205,0.38495131,0.700537463,gain,ns,-0.00000399,0.00000349,-1.142126071,0.254283009,neg,ns,-0.001460526,0.001022206,-1.428799174,0.154068778,neg,ns,0.812285363,0.0000244,0.0000352,0.694887601,0.48764624,pos,ns,0.966007345,Iqch,Iqch_Intron,9,63523797,63523846,63523797,63523798,50,-,CGAGACCAATTTGAATAAAACAAGGGGCCTTCCTTGAACTCAATCAAGGA,"Intron (Gm16759-201/Gm16759-201, intron 3 of 4)",9,63421455,63602493,181039,2,Iqch-201,78647,Iqch-201;Iqch-203;Iqch-204;Iqch-202;Iqch-206,Iqch;Iqch;Iqch;Iqch;Iqch,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,22,78250,ENSMUSG00000037801,mapped to different genes,9,63523737,63523798,62,*,62,7,0.548387097,1.522807018,0.112903226,0.00000583,CpGisland,TRUE,NA,NRS
3186,cg15879584,-0.000146889,0.0000154,-9.529205902,4.79E-19,loss,yes,-0.0000299,0.0000262,-1.142095689,0.254295616,neg,ns,-0.020508508,0.007671994,-2.673165408,0.007911783,neg,ns,2.101725607,0.000621171,0.000263839,2.35435365,0.019178487,pos,ns,0.832822005,Klf9,Klf9_Intron,19,23147170,23147219,23147170,23147171,50,-,CGTAAATTAGTGCCTAGTAATTGGTACAAAGGCACTTTCTGTTTCTATGC,"Intron (Klf9-201/Klf9, intron 1 of 1)",19,23141226,23168134,26909,1,Klf9-201,5944,Klf9-201;Klf9-202,Klf9;Klf9,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,13,16601,ENSMUSG00000033863,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
5915,cg13276805,0.000142192,0.000014,10.13889286,4.74E-21,gain,yes,-0.0000272,0.0000238,-1.141909137,0.25437304,neg,ns,0.021280663,0.006980107,3.04875887,0.002495917,pos,ns,2.602769774,-0.000857188,0.000240045,-3.570941153,0.000412156,neg,ns,0.809489188,Fam118b,Fam118b_threeUTR,9,35227342,35227391,35227390,35227391,50,+,ACTTCATATAAACAGTCCTTGAAAAATGTGGATCGAACATTACTGGTACG,3' UTR,9,35216965,35267780,50816,2,Fam118b-202,40389,Fam118b-202;Fam118b-203;Fam118b-201;Fam118b-206;Fam118b-209;Fam118b-204;Fam118b-208;Fam118b-207;Srpr-202,Fam118b;Fam118b;Fam118b;Fam118b;Fam118b;Fam118b;Fam118b;Fam118b;Srpr,0;0;0;0;0;0;0;40389;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,1,109229,ENSMUSG00000050471,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11002,cg07528759,-0.0000333,0.00000678,-4.921240146,0.0000014,loss,yes,-0.0000131,0.0000115,-1.141895768,0.25437859,neg,ns,-0.005276555,0.003372687,-1.564495675,0.118721422,neg,ns,0.925470911,0.0000414,0.000115986,0.356874229,0.721428762,pos,ns,0.899365466,Habp2,Habp2_Intergenic_upstream,19,56177364,56177413,56177412,56177413,50,-,GTGATAATCTACACCAGGTTTGTGGAACAAGCACTTAATACTTGGCAGCG,Distal Intergenic,19,56287137,56320089,32953,1,Habp2-201,-109773,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,5,226243,ENSMUSG00000025075,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17904,cg22308621,0.0000435,0.0000159,2.730259398,0.006690419,gain,ns,-0.0000309,0.000027,-1.141893789,0.254379411,neg,ns,-0.008904328,0.007921224,-1.124110156,0.261835991,neg,ns,0.581970657,0.000508395,0.00027241,1.866283666,0.062945778,pos,ns,0.75506354,Irx5,Irx5_Intergenic_downstream,8,92418471,92418520,92418471,92418472,50,-,CGTCTGTGGTCATTTTAAAACAGATCCTTTTTGAAAAGCTGGGTGACATT,Distal Intergenic,8,92357749,92361456,3708,1,Irx5-201,60771,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,11,30,54352,ENSMUSG00000031737,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13913,cg27484097,0.00000262,0.00000534,0.489724841,0.62467499,gain,ns,-0.0000104,0.00000908,-1.141881802,0.254384387,neg,ns,0.020112338,0.002659667,7.561975785,4.54E-13,pos,yes,12.34335286,-0.000746164,0.0000915,-8.157856534,8.60E-15,neg,yes,0.91094888,Ptk2,Ptk2_Exon,15,73343176,73343225,73343224,73343225,50,+,GTGGTTGGCTCACTATTGCTTTCAAAATAATGAAAGACCTTTAATACTCG,"Exon (Ptk2-208/Ptk2, exon 4 of 34)",15,73205102,73423128,218027,2,Ptk2-208,79903,Ptk2-208;Ptk2-201;Ptk2-216;Ptk2-211;Ptk2-215;Ptk2-204;Ptk2-205;Ptk2-213;Ptk2-203;Ptk2-206;Ptk2-207,Ptk2;Ptk2;Ptk2;Ptk2;Ptk2;Ptk2;Ptk2;Ptk2;Ptk2;Ptk2;Ptk2,0;0;0;0;0;0;0;0;0;79853;80055,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,5,14083,ENSMUSG00000022607,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23108,cg25081893,0.0000297,0.00000672,4.422477756,0.0000135,gain,ns,-0.000013,0.0000114,-1.141696217,0.254461428,neg,ns,0.005752711,0.003342136,1.721267783,0.086199916,pos,ns,1.064493158,-0.000228312,0.000114936,-1.986433797,0.047865429,neg,ns,0.554789641,Rnf220,Rnf220_Intron,4,117304336,117304385,117304336,117304337,50,+,CGAGACAGATAAAACCATCGACCCGTCGCCGCCAGCGTTTCGGCTTTATC,"Intron (Rnf220-201/Rnf220, intron 3 of 14)",4,117271463,117497052,225590,2,Rnf220-201,192667,Rnf220-201;Rnf220-202;Rnf220-208;Rnf220-207,Rnf220;Rnf220;Rnf220;Rnf220,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,4,117304190,117304735,546,*,546,58,0.690476191,0.936645963,0.106227106,6.95E-46,CpGisland,TRUE,NA,NRS
11916,cg00252955,-0.00000489,0.00000407,-1.20119013,0.230594392,loss,ns,-0.00000789,0.00000691,-1.141571699,0.254513128,neg,ns,-0.001922075,0.00202424,-0.949529341,0.34309111,neg,ns,0.464590536,-0.000125574,0.0000696,-1.803880961,0.072220617,neg,ns,0.894563473,Tank,Tank_Intergenic_downstream,2,61662590,61662639,61662638,61662639,50,-,CCAATAAAGCTGTGAGTTTTTTCATTACACCAAATGCAGCTCTACGGGCG,Distal Intergenic,2,61643831,61649977,6147,1,Tank-211,18808,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,17,21353,ENSMUSG00000064289,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18412,cg03964556,-0.00000285,0.00000154,-1.853890666,0.064704559,loss,ns,0.00000298,0.00000261,1.141397146,0.254585615,pos,ns,0.00188052,0.000764579,2.459549,0.014456914,pos,ns,1.839924413,-0.0000638,0.0000263,-2.426341571,0.01582202,neg,ns,0.964285167,Kat7,Kat7_Exon,11,95306139,95306188,95306139,95306140,50,+,CGAGATCTGTAGAAAAATCGGAATCTTCGGTTCCATCTGAACTACTGCCT,"Exon (Kat7-201/Kat7, exon 2 of 14)",11,95274259,95309602,35344,2,Kat7-201,3414,Kat7-201;Kat7-202;Kat7-203;Kat7-204;Kat7-205;Kat7-208;Kat7-209;Kat7-211;Kat7-207,Kat7;Kat7;Kat7;Kat7;Kat7;Kat7;Kat7;Kat7;Kat7,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,217127,ENSMUSG00000038909,conserved gene but different region,11,95306081,95306167,87,*,87,8,0.540229885,1.274725275,0.091954023,0.00000415,CpGisland,TRUE,U10,Tr-S
25918,cg10704245,0.00000938,0.00000413,2.267543422,0.024045184,gain,ns,-0.00000802,0.00000702,-1.14131753,0.254618682,neg,ns,-0.001197482,0.002057978,-0.581873068,0.561075078,neg,ns,0.250979021,-0.0000328,0.0000708,-0.46292803,0.643740753,neg,ns,0.822448968,Amz1,Amz1_threeUTR,5,140760830,140760879,140760830,140760831,50,+,CGTTGAAGAAGAGCTTGTTGTTGACGATGGTCTCGAAGATGTTCATGGAC,3' UTR,5,140749283,140761439,12157,1,Amz1-206,11547,Amz1-206;Gna12-201;Gna12-202,Amz1;Gna12;Gna12,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,4,231842,ENSMUSG00000050022,conserved gene but different region,5,140760830,140761062,233,*,233,13,0.52360515,0.814247312,0.055793991,0.000000389,CpGisland,TRUE,U10,Tr-S
25140,cg18656090,-0.00000366,0.00000416,-0.881252541,0.378863883,loss,ns,0.00000806,0.00000706,1.14121376,0.254661785,pos,ns,0.000328761,0.002069635,0.15884989,0.873890577,pos,ns,0.058542944,-0.0000891,0.0000712,-1.251770615,0.211597147,neg,ns,0.894916752,Ahdc1,Ahdc1_fiveUTR,4,133061443,133061492,133061491,133061492,50,-,GGTCAGGATGCGTGTGAAGCCCCAGGGCCTGGTGGTGACTTCCAGTGCCG,5' UTR,4,133011506,133077863,66358,1,Ahdc1-203,49937,Ahdc1-210;Ahdc1-203;Ahdc1-204;Ahdc1-205;Ahdc1-211;Ahdc1-209;Ahdc1-206;Ahdc1-201;Ahdc1-202;Ahdc1-208,Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1,0;0;0;0;0;0;0;0;0;-4757,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,49,230793,ENSMUSG00000037692,conserved gene but different region,4,133061386,133061574,189,*,189,13,0.698412698,0.586816336,0.068783069,0.000000034,CpGisland,TRUE,U10,Tr-S
24347,cg09757198,-0.000015,0.00000237,-6.34711427,7.78E-10,loss,yes,0.0000046,0.00000403,1.141147833,0.254689172,pos,ns,-0.000482224,0.001179829,-0.408723597,0.683024718,neg,ns,0.165563579,0.0000222,0.0000406,0.547888965,0.584162426,pos,ns,0.955811121,Ttc13,Ttc13_Exon,8,124699687,124699736,124699687,124699688,50,-,CGGCCATAAATTGCACTAACCAGATCAGGCTCCTCCTAGTCAGACCAAAA,"Exon (Ttc13-202/Ttc13, exon 5 of 20)",8,124671332,124721964,50633,2,Ttc13-202,22228,Ttc13-202;Ttc13-212;Ttc13-210;Ttc13-201;Ttc13-203;Ttc13-211,Ttc13;Ttc13;Ttc13;Ttc13;Ttc13;Ttc13,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,234875,ENSMUSG00000037300,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12499,cg27447131,-0.00000493,0.00000324,-1.521861855,0.129063057,loss,ns,-0.00000628,0.0000055,-1.141140339,0.254692285,neg,ns,0.000977643,0.001612505,0.606288287,0.544767036,pos,ns,0.263789179,-0.0000682,0.0000555,-1.229942518,0.219651211,neg,ns,0.942605096,Megf11,Megf11_Exon,9,64700117,64700166,64700117,64700118,50,+,CGTCAGAACACATACATTATGGACAAAGGCTTCAAAGGTAGAGTATCCAA,"Exon (Megf11-202/Megf11, exon 22 of 23)",9,64385626,64700975,315350,1,Megf11-202,314491,Megf11-202;Megf11-203;Megf11-210;Megf11-201;Megf11-209,Megf11;Megf11;Megf11;Megf11;Megf11,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,7,214058,ENSMUSG00000036466,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24552,cg23984510,-0.00000169,0.00000136,-1.242220258,0.215094218,loss,ns,0.00000263,0.0000023,1.141110287,0.25470477,pos,ns,0.001321557,0.000675268,1.9570851,0.051234685,pos,ns,1.290435929,-0.0000271,0.0000232,-1.167461906,0.24392106,neg,ns,0.965012579,Zmym4,Zmym4_Exon,4,126925525,126925574,126925573,126925574,50,+,TTCAACCTTGAATCCAAATCTTTATGGGGTTTATCCAACCGTTTTTCACG,Promoter (<=1kb),4,126922835,126925561,2727,2,Zmym4-203,0,Zmym4-204;Zmym4-201;Zmym4-206;Zmym4-203;Zmym4-209;Zmym4-202,Zmym4;Zmym4;Zmym4;Zmym4;Zmym4;Zmym4,0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,8,67785,ENSMUSG00000042446,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21602,cg02600490,-0.0000144,0.00000745,-1.932531815,0.054204671,loss,ns,0.0000144,0.0000127,1.141094759,0.254711221,pos,ns,0.011284447,0.00370719,3.04393526,0.002535088,pos,ns,2.596006974,-0.000407784,0.00012749,-3.198554103,0.001523996,neg,ns,0.807173169,Syt1,Syt1_Exon,10,108500686,108500735,108500686,108500687,50,-,CGATGGCATCGTTCTTGCCAATCTTGTCATAGTCCAAAACAGTTACCACC,"Exon (Syt1-202/Syt1, exon 12 of 12)",10,108497650,109010975,513326,2,Syt1-202,510240,Syt1-202;Syt1-201,Syt1;Syt1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,5,20979,ENSMUSG00000035864,conserved gene and region,10,108500602,108500696,95,*,95,9,0.642105263,0.931372549,0.094736842,0.000000592,CpGisland,TRUE,U15,NS
10327,cg01560325,-0.000000368,0.00000161,-0.227802434,0.819950009,loss,ns,0.00000313,0.00000274,1.140850979,0.254812515,pos,ns,0.001340898,0.000802989,1.669882726,0.095951952,pos,ns,1.017946186,-0.0000315,0.0000276,-1.139738404,0.255275163,neg,ns,0.963163155,Fmnl2,Fmnl2_Exon,2,53054533,53054582,53054581,53054582,50,-,CTGCACAGAGGGAGCAACCTGCCCTCACCTGTGGGCAACAGTGTCTCCCG,"Exon (Fmnl2-205/Fmnl2, exon 6 of 27)",2,52857860,53132203,274344,1,Fmnl2-205,196673,Fmnl2-205;Fmnl2-201;Fmnl2-203;Fmnl2-204;Fmnl2-202,Fmnl2;Fmnl2;Fmnl2;Fmnl2;Fmnl2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,71409,ENSMUSG00000036053,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20692,cg04131501,0.00000547,0.00000146,3.759937237,0.000203114,gain,ns,-0.00000282,0.00000247,-1.140793775,0.254836289,neg,ns,0.001282351,0.000724546,1.769870007,0.077731747,pos,ns,1.10940157,-0.0000226,0.0000249,-0.90828126,0.364435191,neg,ns,0.022484255,Pou4f1,Pou4f1_Promoter,14,104473487,104473536,104473535,104473536,50,+,GTTGCCTTGTCATGTAACACATTGCCCTGATTTATTATAAAATTTTAACG,Promoter (5-6kb),14,104461676,104467999,6324,2,Pou4f1-201,-5488,Rnf219-201,Rnf219,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,6,31,18996,ENSMUSG00000048349,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
20576,cg12934154,0.000000293,0.000000552,0.531299936,0.59559142,gain,ns,-0.00000107,0.000000938,-1.14068785,0.254880313,neg,ns,-0.000196143,0.000274738,-0.713925803,0.475810231,neg,ns,0.322566224,0.00000477,0.00000945,0.505309699,0.613700396,pos,ns,0.989677148,Hipk1,Hipk1_threeUTR,3,103753424,103753473,103753424,103753425,50,-,CGCAGCTCAGAGTAAAGGGCACCGCATACTGCGGTGTGATGGTGGCTACT,3' UTR,3,103739815,103791563,51749,2,Hipk1-203,38090,Hipk1-203;Hipk1-202;Hipk1-201;Hipk1-206;Hipk1-207;Hipk1-204;Hipk1-205,Hipk1;Hipk1;Hipk1;Hipk1;Hipk1;Hipk1;Hipk1,0;0;0;0;-2359;-2410;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,11,15257,ENSMUSG00000008730,conserved gene but different region,3,103753407,103753459,53,*,53,7,0.735849057,0.97631579,0.132075472,0.00000196,CpGisland,TRUE,U10,Tr-S
3529,cg23235460,-0.00000417,0.00000185,-2.249709903,0.025168671,loss,ns,0.00000359,0.00000315,1.140508533,0.254954854,pos,ns,0.001447262,0.000923156,1.567732602,0.117963704,pos,ns,0.9282516,-0.0000259,0.0000317,-0.814880509,0.415766289,neg,ns,0.06724778,Lpp,Lpp_Promoter,16,24393380,24393429,24393428,24393429,50,-,AAGTCAGGAATTCAGGCCCCTGACGTCAGCCTCCAGCGCTCAGGGCACCG,Promoter (<=1kb),16,24393507,24685183,291677,1,Lpp-205,-127,Lpp-205;Lpp-201;Lpp-204,Lpp;Lpp;Lpp,0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,7,210126,ENSMUSG00000033306,mapped to different genes,16,24393279,24393443,165,*,165,19,0.715151515,0.933035714,0.115151515,4.92E-16,CpGisland,TRUE,U1,Pr-A
25890,cg17238926,-0.00000583,0.00000469,-1.244488193,0.214259999,loss,ns,0.00000908,0.00000796,1.140292522,0.255044668,pos,ns,-0.00115572,0.002332833,-0.4954147,0.620658412,neg,ns,0.207147354,0.0000764,0.0000802,0.952208321,0.341733175,pos,ns,0.900634618,Frmpd3,Frmpd3_Exon,X,140419001,140419050,140419049,140419050,50,+,TGCTGTTGATGGAGTGGCCTGAAGCCACCAACTTTGCCTGCCTGATCGCG,"Exon (Frmpd3-203/Frmpd3, exon 13 of 15)",20,140342263,140435467,93205,1,Frmpd3-203,76738,Frmpd3-203,Frmpd3,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,10,245643,ENSMUSG00000042425,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10935,cg20429317,0.0000817,0.0000111,7.334028674,1.96E-12,gain,yes,-0.0000216,0.0000189,-1.140288066,0.255046521,neg,ns,0.017951193,0.005542177,3.239014866,0.001329569,pos,ns,2.876288998,-0.000543667,0.000190595,-2.852473336,0.004629578,neg,ns,0.460290168,Tcf7l2,Tcf7l2_Intron,19,55891809,55891858,55891809,55891810,50,+,CGGAGTTAGGATCAAAGGCGCTTGCTTTATGTGGCTGTGCTAGACTTTGA,"Intron (Tcf7l2-213/Tcf7l2, intron 4 of 13)",19,55741820,55933229,191410,1,Tcf7l2-213,149989,Tcf7l2-213;Tcf7l2-201;Tcf7l2-208;Tcf7l2-211;Tcf7l2-212;Tcf7l2-206;Tcf7l2-204;Tcf7l2-205;Tcf7l2-222;Tcf7l2-215;Tcf7l2-214;Tcf7l2-207;Tcf7l2-202;Tcf7l2-209;Tcf7l2-210;Tcf7l2-217;Tcf7l2-220;Tcf7l2-218;Tcf7l2-203;Tcf7l2-216,Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,55,88,21416,ENSMUSG00000024985,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27116,cg14424049,0.0000371,0.00000458,8.11151929,1.18E-14,gain,yes,-0.00000887,0.00000778,-1.140086236,0.255130459,neg,ns,0.006322624,0.002278764,2.774584453,0.005862608,pos,ns,2.231909163,-0.000131954,0.0000784,-1.683804677,0.093226037,neg,ns,0.038727974,Lrrc7,Lrrc7_fiveUTR,3,158561839,158561888,158561839,158561840,50,+,CGACACCAGCTGCAGCTGCTTCAAAGTGTGAAAAATGTCAAGGAGATTTT,Promoter (<=1kb),3,158082895,158562221,479327,2,Lrrc7-205,333,Lrrc7-205;Lrrc7-204;Lrrc7-207;Lrrc7-201;Lrrc7-202;Lrrc7-203,Lrrc7;Lrrc7;Lrrc7;Lrrc7;Lrrc7;Lrrc7,0;0;0;0;-494;-503,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,10,242274,ENSMUSG00000028176,conserved gene but different region,3,158561491,158561840,350,*,350,35,0.728571429,0.753660637,0.1,6.55E-27,CpGisland,TRUE,U3,Pr-B
25761,cg14464509,-0.0000122,0.000006,-2.035686177,0.042631938,loss,ns,0.0000116,0.0000102,1.140024249,0.255156242,pos,ns,-0.003039434,0.00298519,-1.018170807,0.309390744,neg,ns,0.509492684,0.0000653,0.00010266,0.635660886,0.525466441,pos,ns,0.07773593,Uncx,Uncx_Promoter,5,139536494,139536543,139536494,139536495,50,-,CGTGCAAATTGAGTAGATTAAATGACTCTAAATAATTAGCCACAGATCCT,Promoter (6-7kb),5,139543494,139548179,4686,1,Uncx-201,-7000,NA,NA,NA,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,22,88,22255,ENSMUSG00000029546,conserved gene and region,5,139536349,139536575,227,*,227,17,0.537444934,1.039601293,0.074889868,3.67E-11,CpGisland,TRUE,U13,Hc-P
24847,cg23366974,-0.0000016,0.000000769,-2.076058007,0.038712489,loss,ns,0.00000149,0.00000131,1.14002053,0.25515779,pos,ns,0.000337568,0.000382814,0.881806768,0.378564518,pos,ns,0.421860094,-0.0000121,0.0000132,-0.919527537,0.358534649,neg,ns,0.972035132,Gdf11,Gdf11_threeUTR,10,128883511,128883560,128883559,128883560,50,-,CCATAAAGTGCCCGTGGTAAGTGCTCAGAATTCATCTCTTGGCTGTGGCG,3' UTR,10,128882295,128891718,9424,2,Gdf11-201,8158,Gdf11-201,Gdf11,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,7,14561,ENSMUSG00000025352,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4060,cg20610175,-0.000018,0.00000678,-2.64788729,0.008513969,loss,ns,0.0000131,0.0000115,1.139978105,0.255175437,pos,ns,-0.00084624,0.003376587,-0.2506199,0.802274017,neg,ns,0.095677273,0.0000492,0.000116121,0.423972668,0.671879789,pos,ns,0.820261523,Gm45647,Gm45647_Intergenic_upstream,8,26677684,26677733,26677684,26677685,50,-,CGTGCACTTGTAAGGAATGAAAGCCTGATTATTTTCTACAACAGTCGCAG,Distal Intergenic,8,26780315,26780509,195,1,Gm45647-201,-102631,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,46,62,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4088,cg24559170,-0.0000174,0.00000982,-1.772103478,0.077359572,loss,ns,0.000019,0.0000167,1.13990903,0.255204173,pos,ns,-0.001891503,0.004885899,-0.387135143,0.698921798,neg,ns,0.155571414,-0.000288453,0.000168026,-1.716722455,0.087028767,neg,ns,0.404194575,B3gat1,B3gat1_Intron,9,26749120,26749169,26749120,26749121,50,+,CGATTTTGCTACTATGCTTATAATAGCCTCCATTAAAGTTATGGGGTTTT,"Intron (B3gat1-204/B3gat1, intron 1 of 6)",9,26733728,26761350,27623,1,B3gat1-204,15392,B3gat1-204;B3gat1-206;B3gat1-203;B3gat1-201;B3gat1-205,B3gat1;B3gat1;B3gat1;B3gat1;B3gat1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,2,76898,ENSMUSG00000045994,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22939,cg23247491,0.0000141,0.00000377,3.728817413,0.000228675,gain,ns,0.0000073,0.00000641,1.139848349,0.255229418,pos,ns,0.006293124,0.001876595,3.353480778,0.000897022,pos,ns,3.047197147,-0.000180422,0.0000645,-2.795684126,0.005502133,neg,ns,0.051086458,Isl1,Isl1_Exon,13,116308409,116308458,116308457,116308458,50,+,TACTGATCGTGAATCTGATTGCCGCAACCAACACATAGGGAAATCAGACG,"Exon (Isl1-201/Isl1, exon 2 of 6)",13,116298281,116309689,11409,2,Isl1-201,1231,Isl1-201;Isl1-202;Isl1-204;Isl1-205,Isl1;Isl1;Isl1;Isl1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,14,16392,ENSMUSG00000042258,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
1633,cg00367518,-0.0000135,0.00000968,-1.394615366,0.164130409,loss,ns,-0.0000188,0.0000165,-1.139803246,0.255248183,neg,ns,-0.003325199,0.004819716,-0.689916123,0.490763085,neg,ns,0.309128112,-0.000191115,0.00016575,-1.153036936,0.249783508,neg,ns,0.887106214,Zfp521,Zfp521_Intron,18,13942257,13942306,13942305,13942306,50,+,CTTATTCACTTCTGCTGCAACTTTAGGATGCATGCTCCAGCCAACTGGCG,"Intron (Zfp521-201/Zfp521, intron 2 of 7)",18,13687013,13972787,285775,2,Zfp521-201,30481,Zfp521-201;Zfp521-204;Zfp521-203;Zfp521-202,Zfp521;Zfp521;Zfp521;Zfp521,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,81,225207,ENSMUSG00000024420,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17489,cg03700602,-0.0000167,0.00000994,-1.675241846,0.094895144,loss,ns,0.0000192,0.0000169,1.139594358,0.255335105,pos,ns,-0.00044022,0.004946876,-0.088989432,0.929147771,neg,ns,0.031915211,-0.0000328,0.000170123,-0.192765806,0.847268608,neg,ns,0.840624682,Gm12635,Gm12635_Intergenic_downstream,4,90477470,90477519,90477470,90477471,50,+,CGTTTATGCTGGGCAATGTGTGAAATTATTTGACTGTGACCAGACTTATT,Distal Intergenic,4,90452874,90453625,752,1,Gm12635-201,24596,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,5,100417247,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12436,cg10462506,-0.00000972,0.00000289,-3.359872578,0.000877242,loss,ns,0.0000056,0.00000492,1.139493836,0.255376942,pos,ns,0.001013786,0.001440093,0.703972825,0.481978146,pos,ns,0.316972654,-0.000100108,0.0000495,-2.021378039,0.044099684,neg,ns,0.940366395,Gm13577,Gm13577_Intergenic_downstream,2,64326741,64326790,64326741,64326742,50,+,CGACATCAATGTATGAAAATCTGTTAGACGCCAGATTGTGTCTCAAGACA,Distal Intergenic,2,64474745,64474949,205,2,Gm13577-201,148159,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,17,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25031,cg16011662,-0.00000376,0.00000167,-2.245845757,0.025418039,loss,ns,0.00000324,0.00000284,1.139304913,0.255455582,pos,ns,0.001268079,0.000833189,1.521957817,0.129039015,pos,ns,0.889278961,-0.000121178,0.0000287,-4.229125361,0.0000309,neg,ns,0.961682496,Fgfr2,Fgfr2_Intron,7,131671871,131671920,131671919,131671920,50,-,TTTTTCTCTCCAAGCCTTACTGACCTGTGGCTAATGAGATTTGTGCTTCG,"Intron (Fgfr2-217/Fgfr2, intron 2 of 6)",7,130162451,133123350,2960900,2,Fgfr2-217,1451430,Fgfr2-217;Gm4585-201,Fgfr2;Gm4585,0;2962,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,58,79,14183,ENSMUSG00000030849,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4119,cg17491340,-0.00000236,0.00000841,-0.280642198,0.779172047,loss,ns,-0.0000163,0.0000143,-1.139279718,0.255466071,neg,ns,0.00545975,0.004184407,1.304784749,0.192933906,pos,ns,0.714591442,-0.000111702,0.000143901,-0.776239666,0.438199317,neg,ns,0.856179727,Arhgap18,Arhgap18_Exon,10,26912583,26912632,26912631,26912632,50,+,TCCAGTGTCATTATTGCTTTGCAGGCTGACGTTCCTCAGGGAGTGATTCG,"Exon (Arhgap18-201/Arhgap18, exon 13 of 15)",10,26772477,26918648,146172,1,Arhgap18-201,140106,Arhgap18-201;Arhgap18-203,Arhgap18;Arhgap18,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,73910,ENSMUSG00000039031,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25412,cg09384627,-0.0000103,0.00000752,-1.366182698,0.172871833,loss,ns,0.0000146,0.0000128,1.139228381,0.255487445,pos,ns,-0.005377582,0.003743508,-1.4365088,0.151866023,neg,ns,0.818539379,-0.0000178,0.000128739,-0.138389491,0.890022453,neg,ns,0.676492169,Eif4a3l1,Eif4a3l1_Intergenic_upstream,6,136304552,136304601,136304600,136304601,50,+,TGCTTATCCCACGATCCCTCTGTCACCCTATTTTTAGACTGGAGACAACG,Distal Intergenic,6,136327539,136329983,2445,1,Eif4a3l1-202,-22938,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,668137,ENSMUSG00000094973,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5870,cg08124835,0.0000198,0.00000391,5.054056073,0.000000741,gain,yes,-0.00000756,0.00000664,-1.13919511,0.255501296,neg,ns,-0.004648655,0.001945039,-2.390006002,0.017445104,neg,ns,1.758326445,0.000183767,0.0000669,2.747314283,0.006360154,pos,ns,0.896395746,Sox2,Sox2_Intergenic_downstream,3,35088475,35088524,35088523,35088524,50,+,TTTCAGGGTCTGATGTGTGGGAATCAAATGAGAGGCCTAGCTCAAATCCG,Distal Intergenic,3,34650405,34652461,2057,1,Sox2-201,438070,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,62,20674,ENSMUSG00000074637,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21919,cg02386994,-0.0000324,0.00000808,-4.006397144,0.0000773,loss,ns,-0.0000156,0.0000137,-1.139135903,0.255525949,neg,ns,-0.00605803,0.004020067,-1.506947547,0.132842437,neg,ns,0.876663165,-0.0000445,0.00013825,-0.321658204,0.747928422,neg,ns,0.912653359,Bdnf,Bdnf_Exon,2,109723489,109723538,109723537,109723538,50,-,AGGTGGCTTGGCCTACCCAGGTGTGCGGACCCATGGGACTCTGGAGAGCG,"Exon (Bdnf-201/Bdnf, exon 2 of 2)",2,109674700,109727007,52308,1,Bdnf-201,48789,Bdnf-201;Bdnf-207;Bdnf-208;Bdnf-210;Bdnf-206;Bdnf-209;Bdnf-211;Bdnf-205;Bdnf-203;Bdnf-204;Bdnf-202,Bdnf;Bdnf;Bdnf;Bdnf;Bdnf;Bdnf;Bdnf;Bdnf;Bdnf;Bdnf;Bdnf,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,18,12064,ENSMUSG00000048482,mapped to different genes,2,109723441,109723686,246,*,246,17,0.573170732,0.851037851,0.069105691,1.34E-10,CpGisland,TRUE,NA,NRS
17265,cg20623164,-0.0000208,0.0000108,-1.931087709,0.054383756,loss,ns,0.0000208,0.0000183,1.1389504,0.255603197,pos,ns,0.013582275,0.005353233,2.537209745,0.011663907,pos,ns,1.933155948,-0.000805576,0.000184097,-4.375820328,0.0000166,neg,ns,0.792366676,Nog,Nog_Intergenic_upstream,11,89340040,89340089,89340088,89340089,50,-,AGCCTCAGCTGGCACAGAAATTCCAAAATAAATGAACGTGTTGTAAATCG,Distal Intergenic,11,89300638,89302332,1695,2,Nog-201,-37757,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,36,18121,ENSMUSG00000048616,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9442,cg09443670,0.00000695,0.00000708,0.982361549,0.326687815,gain,ns,-0.0000137,0.000012,-1.138890854,0.255627997,neg,ns,-0.004714645,0.003523309,-1.338129725,0.181834841,neg,ns,0.740322898,0.000377344,0.000121166,3.114262877,0.002016277,pos,ns,0.740002589,Gm48909,Gm48909_Intron,14,48753227,48753276,48753275,48753276,50,-,TACCCTTGCATAATGTTACAGGCTATTGTTAGGCCAGCGCCAGTCAGTCG,"Intron (Otx2os1-206/Otx2os1-206, intron 2 of 4)",14,48695601,48695981,381,2,Gm48909-201,-57295,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,8,105245868,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17208,cg04517300,-0.00000353,0.0000117,-0.303219452,0.761926012,loss,ns,0.0000226,0.0000198,1.138738956,0.255691268,pos,ns,0.008550189,0.005802273,1.47359308,0.141605866,pos,ns,0.848918755,-0.0000915,0.00019954,-0.458367482,0.64700961,neg,ns,0.747074383,Nrxn3,Nrxn3_Intron,12,89191164,89191213,89191164,89191165,50,-,CGGACACGCTATGGTAAACAAACTACATTGTCTGGTAGATATCATTCTTA,"Intron (Nrxn3-209/Nrxn3, intron 5 of 7)",12,88722876,89261571,538696,1,Nrxn3-209,468288,Nrxn3-209;Nrxn3-213;Nrxn3-208;Nrxn3-205;Nrxn3-211;Nrxn3-201;Nrxn3-210,Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,39,18191,ENSMUSG00000066392,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
850,cg15621627,-0.0000121,0.00000738,-1.640810464,0.101850942,loss,ns,0.0000143,0.0000125,1.138625675,0.255738461,pos,ns,-0.0000064,0.003674551,-0.001742727,0.998610627,neg,ns,0.000603817,-0.0000666,0.000126368,-0.527040506,0.598542403,neg,ns,0.812325047,Rps18-ps2,Rps18-ps2_Intergenic_downstream,4,9019485,9019534,9019533,9019534,50,+,TTATTTCTGCAAATAGCTCAACCTCTATCAACTTTCAGGCAGGGATCCCG,Distal Intergenic,4,8941259,8941656,398,1,Rps18-ps2-201,78226,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,3,666782,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10495,cg09622379,0.0000744,0.0000144,5.170221559,0.00000042,gain,yes,-0.0000278,0.0000245,-1.138508876,0.255787126,neg,ns,0.026781896,0.007165229,3.737758828,0.000221036,pos,ns,3.655536591,-0.000947852,0.000246412,-3.846621652,0.000145388,neg,ns,0.393574507,Tbc1d19,Tbc1d19_threeUTR,5,53901590,53901639,53901590,53901591,50,+,CGTGTTTGCTTTCCGAGCAGTGAACCTGATGGAGGTGACATCACTGGCTG,3' UTR,5,53809627,53903965,94339,1,Tbc1d19-201,91963,Tbc1d19-201;Tbc1d19-205;Tbc1d19-209,Tbc1d19;Tbc1d19;Tbc1d19,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,2,67249,ENSMUSG00000039178,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
550,cg17623314,0.0000431,0.00000517,8.332112278,2.60E-15,gain,yes,0.00001,0.00000879,1.138422919,0.255822944,pos,ns,0.007188947,0.002575463,2.791321547,0.005574973,pos,ns,2.253757217,-0.0000977,0.0000886,-1.103044012,0.270863602,neg,ns,0.11589108,Dlx6,Dlx6_Intron,6,6869200,6869249,6869248,6869249,50,-,TTTATCAGAAGTCAATAGAGATACTCAGAGTGCTCCATATAATGACAGCG,"Intron (Dlx6os1-201/Dlx6os1-201, intron 2 of 2)",6,6863798,6865430,1633,1,Dlx6-204,5451,Dlx6-203;Dlx6-202;Dlx6-201;Dlx6-204,Dlx6;Dlx6;Dlx6;Dlx6,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,36,13396,ENSMUSG00000029754,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
17125,cg04049086,-0.0000292,0.00000481,-6.075862992,3.61E-09,loss,yes,-0.00000931,0.00000818,-1.138368344,0.255845688,neg,ns,-0.001790798,0.002395101,-0.747692118,0.45521268,neg,ns,0.341785649,0.0000417,0.0000824,0.505712855,0.613417637,pos,ns,0.870273689,Nkd1,Nkd1_Intron,8,88537496,88537545,88537544,88537545,50,-,GCGAGAGCCAGTTATTTCAGGAGACAAGCAAAGAGCCCTTTATTCTCACG,"Intron (Nkd1-201/Nkd1, intron 3 of 9)",8,88521354,88593618,72265,1,Nkd1-201,16142,Nkd1-201;Nkd1-202,Nkd1;Nkd1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,3,93960,ENSMUSG00000031661,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27823,cg26923224,0.00000242,0.00000575,0.420706115,0.674261193,gain,ns,-0.0000111,0.00000976,-1.138357516,0.2558502,neg,ns,-0.003037776,0.002860804,-1.061860878,0.289125377,neg,ns,0.538913789,-0.000046,0.0000984,-0.467222,0.640669288,neg,ns,0.776008321,Esrrg,Esrrg_Intron,1,188154740,188154789,188154788,188154789,50,-,CTGGTTCCTATCTGCCTGACTCTTTTTTATTTCTCTTTCAATTTCGTCCG,"Intron (Esrrg-203/Esrrg, intron 6 of 7)",1,187609029,188214386,605358,1,Esrrg-203,545711,Esrrg-203;Esrrg-201;Esrrg-202,Esrrg;Esrrg;Esrrg,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,60,26381,ENSMUSG00000026610,conserved gene and region,1,188154784,188154881,98,*,98,9,0.479591837,1.603636364,0.091836735,0.000000773,CpGisland,TRUE,U9,En-Pp
12979,cg21712565,-0.00000616,0.00000207,-2.977579702,0.003134444,loss,ns,0.000004,0.00000351,1.138291337,0.255877781,pos,ns,0.000318757,0.001029246,0.309699242,0.756997753,pos,ns,0.120905409,-0.0000363,0.0000354,-1.024237874,0.306521512,neg,ns,0.024783173,Smc4,Smc4_fiveUTR,3,69004966,69005015,69005014,69005015,50,-,GTTCGAGTTTGTATTTTAGGCGCCATTTTCGAGTGAAGGACCCGGAGCCG,Promoter (<=1kb),3,69004970,69018108,13139,1,Smc4-206,0,Ift80-202;Ift80-204;Ift80-208;Ift80-206;Ift80-207;Ift80-205;Ift80-209;Ift80-212;Smc4-201;Smc4-206;Smc4-202;Smc4-207;Smc4-211,Ift80;Ift80;Ift80;Ift80;Ift80;Ift80;Ift80;Ift80;Smc4;Smc4;Smc4;Smc4;Smc4,-423;-407;-396;-468;-489;-482;-578;-441;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,4,70099,ENSMUSG00000034349,mapped to different genes,3,69004743,69005086,344,*,344,37,0.60755814,1.165567766,0.10755814,1.12E-29,CpGisland,TRUE,U1,Pr-A
23270,cg11770756,0.0000354,0.00000531,6.677001108,1.13E-10,gain,yes,-0.0000103,0.00000901,-1.138271995,0.255885843,neg,ns,0.000997332,0.002640667,0.377681969,0.705925318,pos,ns,0.151241242,0.0000854,0.0000908,0.940442028,0.347723096,pos,ns,0.897975026,Eri3,Eri3_Intron,4,117645015,117645064,117645063,117645064,50,-,ATCTATTAAACCCAATACACTTGTCGCAGCTGCTAAGCCCCCATAAGCCG,"Intron (Eri3-201/Eri3, intron 7 of 8)",4,117550365,117674297,123933,1,Eri3-201,94650,Eri3-201;Eri3-206;Eri3-203,Eri3;Eri3;Eri3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,82,97,140546,ENSMUSG00000033423,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13222,cg03996297,-0.00000695,0.00000396,-1.756042631,0.080068617,loss,ns,-0.00000765,0.00000672,-1.138229754,0.255903449,neg,ns,0.000992049,0.001969223,0.50377685,0.614776008,pos,ns,0.211283089,-0.00013624,0.0000677,-2.011773472,0.045108794,neg,ns,0.925929524,Atp13a1,Atp13a1_Exon,8,69799779,69799828,69799779,69799780,50,-,CGAAGTATTAAAACTCAGGGGCTGAAAATTCACCAGCGCTTTCATTTTGC,"Exon (Atp13a1-201/Atp13a1, exon 14 of 26)",8,69791163,69807749,16587,1,Atp13a1-201,8616,Atp13a1-201;Atp13a1-206;Atp13a1-207;Atp13a1-211;Atp13a1-202;Atp13a1-204;Atp13a1-205;Atp13a1-203;Atp13a1-209,Atp13a1;Atp13a1;Atp13a1;Atp13a1;Atp13a1;Atp13a1;Atp13a1;Atp13a1;Atp13a1,0;0;0;2826;2809;2690;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,3,170759,ENSMUSG00000031862,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6345,cg02459351,-0.0000381,0.00000738,-5.154770855,0.000000453,loss,yes,-0.0000143,0.0000125,-1.138169494,0.255928567,neg,ns,-0.007190976,0.003673966,-1.957279208,0.051211762,neg,ns,1.290630279,0.0000518,0.000126347,0.409787119,0.682245141,pos,ns,0.89326401,Tshz3,Tshz3_Intergenic_downstream,7,36945060,36945109,36945108,36945109,50,-,CCTTGATAAGATGTGTCTTCTTAATTGGGCCCTTGATGCTTCTTGGATCG,Distal Intergenic,7,36698217,36702113,3897,1,Tshz3-202,246892,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,21,58,243931,ENSMUSG00000021217,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5617,cg24217623,-0.0000383,0.0000111,-3.44459949,0.00065067,loss,ns,0.0000215,0.0000189,1.138159819,0.2559326,pos,ns,-0.011908169,0.005533378,-2.152061501,0.032164384,neg,ns,1.49262476,0.000250341,0.000190292,1.315558402,0.189294426,pos,ns,0.428689554,Pbx3,Pbx3_Intron,2,34359856,34359905,34359904,34359905,50,-,ATAAAAGCTCATTTGCATAACTTATGTGTGAAAAACAATTATGAGCCGCG,"Intron (Pbx3-202/Pbx3, intron 2 of 7)",2,34171457,34372038,200582,2,Pbx3-202,12133,Pbx3-202;Pbx3-201;Pbx3-206;Pbx3-207;Pbx3-209;Pbx3-204;Pbx3-205;Pbx3-203,Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,82,18516,ENSMUSG00000038718,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9278,cg00391579,-0.00000897,0.00000408,-2.200393696,0.028516312,loss,ns,0.00000788,0.00000693,1.1380127,0.255993931,pos,ns,-0.001596162,0.002029251,-0.786577066,0.432130367,neg,ns,0.364385214,0.0000244,0.0000698,0.349152652,0.727211752,pos,ns,0.925468012,Foxp4,Foxp4_Intron,17,47877505,47877554,47877553,47877554,50,+,GTGAAAACAATTTGTTTGACCCTGATGCTGCAAGGGTCTGGGAGACAGCG,"Intron (Foxp4-204/Foxp4, intron 8 of 16)",17,47867133,47924645,57513,2,Foxp4-204,47091,Foxp4-204;Foxp4-203;Foxp4-201;Foxp4-202;Foxp4-205;Foxp4-208;Foxp4-206,Foxp4;Foxp4;Foxp4;Foxp4;Foxp4;Foxp4;Foxp4,0;0;0;0;10879;1399;10596,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,25,74123,ENSMUSG00000023991,conserved gene and region,17,47877499,47877685,187,*,187,11,0.620320856,0.613114754,0.058823529,0.00000245,CpGisland,TRUE,U12,Tr-I
13225,cg00795277,0.00000652,0.00000145,4.488906623,0.0000101,gain,ns,-0.00000281,0.00000247,-1.137865067,0.256055487,neg,ns,0.001639705,0.000722472,2.269576027,0.02391995,pos,ns,1.621239739,-0.0000696,0.0000248,-2.800902873,0.005416132,neg,ns,0.037581406,Fgf11,Fgf11_Exon,11,69801459,69801508,69801459,69801460,50,+,CGCCCCCCGCACAGTCGCACCTTGGACAGCAGGATGAGGAGCTGCTTCTG,Promoter (<=1kb),11,69796068,69801716,5649,2,Fgf11-201,208,Fgf11-201;Fgf11-202;Tmem102-201,Fgf11;Fgf11;Tmem102,0;0;4116,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,14166,ENSMUSG00000042826,conserved gene and region,11,69801415,69801475,61,*,61,8,0.754098361,0.968253968,0.131147541,0.000000253,CpGisland,TRUE,U3,Pr-B
3386,cg25609270,0.0000258,0.00000958,2.69371485,0.007450797,gain,ns,-0.0000185,0.0000163,-1.137757857,0.256100195,neg,ns,0.00533412,0.00477055,1.118135138,0.264375013,pos,ns,0.577779593,-0.000310101,0.000164059,-1.890180918,0.059666413,neg,ns,0.275145254,Gm11892,Gm11892_Intergenic_upstream,4,23983710,23983759,23983710,23983711,50,+,CGTGAAAGCTCCTTATAGGCTGCAGGATGTGGATGTGACTAAATTTTTAA,Distal Intergenic,4,24238100,24239301,1202,1,Gm11892-201,-254341,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,16,16,664973,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15015,cg20319037,-0.00000311,0.00000369,-0.842320511,0.400257941,loss,ns,0.00000714,0.00000628,1.137320947,0.256282448,pos,ns,0.002170729,0.001838779,1.180527474,0.238695495,pos,ns,0.622155777,-0.0000264,0.0000632,-0.417830176,0.676360547,neg,ns,0.920330655,Ntrk3,Ntrk3_Intron,7,78493825,78493874,78493825,78493826,50,+,CGAAAGAGCGCTGTTGACCTTTAAGAATAATTAATATCATCAGGATAGCA,"Intron (Ntrk3-201/Ntrk3, intron 3 of 16)",7,78175959,78578408,402450,2,Ntrk3-201,84534,Ntrk3-201;Ntrk3-206;Ntrk3-205;Ntrk3-202;Ntrk3-204;Ntrk3-213,Ntrk3;Ntrk3;Ntrk3;Ntrk3;Ntrk3;Ntrk3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,15,18213,ENSMUSG00000059146,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22731,cg15520576,0.00000179,0.00000223,0.80370053,0.422185785,gain,ns,-0.00000431,0.00000379,-1.137262949,0.256306648,neg,ns,-0.000411861,0.001111118,-0.370672604,0.711134554,neg,ns,0.148048218,0.0000603,0.0000382,1.578772355,0.115408099,pos,ns,0.944712071,Mknk1,Mknk1_Intron,4,115864195,115864244,115864243,115864244,50,-,AGGACACACACCTAGTATTCAGTGTTATTAGCCGCAATTGCTTCCAGTCG,"Intron (Mknk1-201/Mknk1, intron 5 of 12)",4,115839198,115879250,40053,1,Mknk1-201,24997,Mknk1-201;Mknk1-207;Mknk1-208;Mknk1-212;Mknk1-202;Mknk1-203;Mknk1-210;Mknk1-206;Mknk1-211;Mknk1-209;Mknk1-213,Mknk1;Mknk1;Mknk1;Mknk1;Mknk1;Mknk1;Mknk1;Mknk1;Mknk1;Mknk1;Mknk1,0;0;0;0;0;0;0;24935;0;0;-2023,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,3,17346,ENSMUSG00000028708,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11383,cg27643971,-0.000144481,0.0000186,-7.753531302,1.30E-13,loss,yes,0.000036,0.0000317,1.137245298,0.256314013,pos,ns,0.065064664,0.009274445,7.015478202,1.45E-11,pos,yes,10.84007804,-0.002064615,0.000318947,-6.473214432,3.75E-10,neg,yes,0.398943603,Pakap,Pakap_threeUTR,4,57886276,57886325,57886324,57886325,50,+,CCCTCTCTGCCAGTACACTTCTAAGTTACTGTCTTGCAAGGTGACTTCCG,3' UTR,4,57568179,57896982,328804,1,Pakap-211,318097,Pakap-211;Pakap-213;Pakap-207;Pakap-205;Pakap-206;Pakap-201;Pakap-202;Pakap-204,Pakap;Pakap;Pakap;Pakap;Pakap;Pakap;Pakap;Pakap,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,4,677884,ENSMUSG00000038729,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25750,cg02338635,0.0000114,0.00000393,2.895635322,0.004052786,gain,ns,-0.00000759,0.00000667,-1.137065434,0.256389075,neg,ns,-0.003038364,0.001955247,-1.553954148,0.121215642,neg,ns,0.916441335,0.0001195,0.0000672,1.777194461,0.076516686,pos,ns,0.074417879,Ubr4,Ubr4_Exon,4,139380819,139380868,139380867,139380868,50,-,GAGATGAAGGAGTTGCCGCAGCTGGTGGCCTCAGTCATCGAGAGGTACCG,"Exon (Ubr4-212/Ubr4, exon 1 of 106)",4,139352609,139469763,117155,1,Ubr4-210,28210,Emc1-205;Emc1-202;Emc1-201;Emc1-204;Ubr4-210;Ubr4-212;Ubr4-201;Ubr4-204,Emc1;Emc1;Emc1;Emc1;Ubr4;Ubr4;Ubr4;Ubr4,28232;28226;28209;21572;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,10,69116,ENSMUSG00000066036,conserved gene but different region,4,139380499,139381314,816,*,816,77,0.659313726,0.870671378,0.094362745,1.96E-56,CpGisland,TRUE,U1,Pr-A
3105,cg10055059,-0.00000256,0.00000271,-0.941884817,0.34698502,loss,ns,0.00000524,0.00000461,1.137024595,0.25640612,pos,ns,-0.001975038,0.00135063,-1.462308192,0.144669792,neg,ns,0.839622142,0.0000391,0.0000464,0.841032822,0.400977804,pos,ns,0.942813138,Nol4,Nol4_Exon,18,22769811,22769860,22769811,22769812,50,-,CGCTCTTGATACTCAGGGAATTGTCGCCTGCATGAGTCAATGATAGCCTG,"Exon (Nol4-202/Nol4, exon 8 of 11)",18,22693181,22850754,157574,2,Nol4-203,80894,Nol4-203;Nol4-202;Nol4-204;Nol4-201;Nol4-208;Nol4-206,Nol4;Nol4;Nol4;Nol4;Nol4;Nol4,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,16,21,319211,ENSMUSG00000041923,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11492,cg00383766,0.00000958,0.00000267,3.588414791,0.000386531,gain,ns,-0.00000516,0.00000454,-1.136907443,0.25645502,neg,ns,-0.00251005,0.001329029,-1.888634174,0.059874271,neg,ns,1.222759764,0.000115399,0.0000457,2.524857355,0.012073185,pos,ns,0.94273189,Nptn,Nptn_Exon,9,58618661,58618710,58618709,58618710,50,+,AGCTGGGTTTGTCAAGTCGCCCATGTCAGAAACTAAGCTCACGGGGGACG,"Exon (Nptn-212/Nptn, exon 2 of 8)",9,58582240,58651318,69079,1,Nptn-212,36421,Nptn-212;Nptn-201;Nptn-213;Nptn-206;Nptn-203;Nptn-202;Nptn-211;Nptn-207;Nptn-204,Nptn;Nptn;Nptn;Nptn;Nptn;Nptn;Nptn;Nptn;Nptn,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,20,22,20320,ENSMUSG00000032336,conserved gene and region,9,58618678,58618932,255,*,255,20,0.6,0.879917184,0.078431373,1.96E-13,CpGisland,TRUE,NA,NRS
13215,cg23842109,0.0000164,0.00000781,2.093868154,0.037083736,gain,ns,0.0000151,0.0000133,1.136799384,0.256500132,pos,ns,0.007861819,0.003888185,2.021976305,0.044037466,pos,ns,1.356177682,-0.000247408,0.000133714,-1.850273373,0.065225532,neg,ns,0.576776475,Spag16,Spag16_Intergenic_upstream,1,69768949,69768998,69768949,69768950,50,-,CGTGCAGGCTGTGAACACATTTGAAGTCAGCAGGGGACCGTTAGAAACCT,Distal Intergenic,1,69826970,70267277,440308,1,Spag16-205,-58021,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,66722,ENSMUSG00000053153,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22504,cg10521683,-0.00000161,0.00000137,-1.177207267,0.240015825,loss,ns,0.00000264,0.00000232,1.136686523,0.256547253,pos,ns,0.001329326,0.000680532,1.953364248,0.051675763,pos,ns,1.286713101,-0.0000469,0.0000234,-2.002220559,0.046131813,neg,ns,0.965557713,Rps4l-ps,Rps4l-ps_Intergenic_downstream,7,114896875,114896924,114896875,114896876,50,+,CGTTGTTTCAAAGTCTTTATTATTATGACAGCAAAGTCTTGTTCATTAAA,Distal Intergenic,7,114926959,114927726,768,2,Rps4l-ps-201,30802,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,13,19,627967,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5444,cg16124154,0.000034,0.0000133,2.549176306,0.011279255,gain,ns,-0.0000258,0.0000227,-1.136575712,0.256593525,neg,ns,0.002368623,0.006643595,0.3565273,0.72168825,pos,ns,0.141650365,-0.0000676,0.000228473,-0.295684101,0.767669299,neg,ns,0.261000738,Twist1,Twist1_Intergenic_downstream,12,33963058,33963107,33963058,33963059,50,-,CGTGTCCTTTGAAGAAGGTGTGTAATTGGAGTTTAAGGCATGTATGGAAT,Distal Intergenic,12,33957671,33959829,2159,1,Twist1-201,5436,Twist1-201,Twist1,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,7,22160,ENSMUSG00000035799,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
18520,cg17417202,0.0000392,0.0000035,11.21421035,1.00E-24,gain,yes,-0.00000675,0.00000594,-1.136546603,0.25660568,neg,ns,0.001704058,0.001740639,0.978984125,0.328351195,pos,ns,0.483661399,0.0000677,0.0000599,1.131334018,0.25878896,pos,ns,0.087608429,Hoxb9,Hoxb9_Exon,11,96271558,96271607,96271558,96271559,50,+,CGCTTAGCAGCTATTATGTCGACTCGATCATAAGTCACGAGAGTGAGGAC,Promoter (<=1kb),11,96271457,96276595,5139,1,Hoxb9-201,101,Hoxb9-201;Hoxb9-202,Hoxb9;Hoxb9,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,22,15417,ENSMUSG00000020875,mapped to different genes,11,96271433,96272051,619,*,619,70,0.675282714,0.992327951,0.113085622,2.33E-57,CpGisland,TRUE,NA,NRS
18152,cg14451207,0.00000485,0.0000012,4.043808504,0.0000664,gain,ns,-0.00000231,0.00000204,-1.136458272,0.25664257,neg,ns,0.001071798,0.000596733,1.796109544,0.073450695,pos,ns,1.134004092,-0.0000159,0.0000205,-0.775335963,0.4387322,neg,ns,0.012816895,Hsd17b12,Hsd17b12_Intron,2,94243786,94243835,94243786,94243787,50,+,CGATTCCTTCTCAGTTCGGAATGAACTGTGACTAGAGCCATGACGCAGCC,"Intron (Mir670hg-205/Mir670hg-205, intron 2 of 5)",2,94032689,94157964,125276,2,Hsd17b12-201,-85822,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,14,19,56348,ENSMUSG00000027195,conserved gene but different region,2,94243768,94243904,137,*,137,10,0.525547445,1.064491065,0.072992701,0.00000123,CpGisland,TRUE,U13,Hc-P
2274,cg16646236,-0.0000023,0.00000228,-1.009261491,0.31363635,loss,ns,0.0000044,0.00000387,1.136409304,0.256663022,pos,ns,0.003498183,0.001134767,3.082731995,0.002235415,pos,ns,2.650641811,-0.000113947,0.000039,-2.919873059,0.003758399,neg,ns,0.945920374,Meis1,Meis1_threeUTR,11,18882633,18882682,18882633,18882634,50,-,CGAATAAGGTCTCCAGGCTCTAACAATGAATGGCTGCTTAATCTAGCCTA,3' UTR,11,18879817,19018985,139169,2,Meis1-206,136303,Meis1-206;Meis1-202;Meis1-209;Meis1-201;Meis1-203;Meis1-208;Meis1-207,Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,12,88,17268,ENSMUSG00000020160,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16824,cg17788462,-0.00000626,0.00000422,-1.484350781,0.13873195,loss,ns,-0.00000815,0.00000717,-1.136348895,0.256688255,neg,ns,-0.00371449,0.002100037,-1.768773609,0.077914981,neg,ns,1.108379029,0.0000077,0.0000722,0.106618586,0.915160536,pos,ns,0.906534481,Lrba,Lrba_Intron,3,86668159,86668208,86668207,86668208,50,+,TCATGAAATGCATACTACTTTGATCTGTGACCTTTTTGTGGTGCTAATCG,"Intron (Lrba-202/Lrba, intron 47 of 50)",3,86224680,86746712,522033,1,Lrba-202,443479,Gm3788-201;Lrba-202;Lrba-204;Lrba-201;Lrba-206,Gm3788;Lrba;Lrba;Lrba;Lrba,3960;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,45,80877,ENSMUSG00000028080,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18464,cg26806175,-0.00000209,0.000000882,-2.372119782,0.018296661,loss,ns,0.0000017,0.0000015,1.136332626,0.256695051,pos,ns,0.000545349,0.00043898,1.242310626,0.215060932,pos,ns,0.667438476,-0.0000195,0.0000151,-1.290676313,0.197777702,neg,ns,0.983514054,Cnot1,Cnot1_fiveUTR,8,95788696,95788745,95788744,95788745,50,+,TTGAGACAAGGCCAGCGAGAGCGAGTCAAGATTCATTGCTGGTTGGGGCG,5' UTR,8,95719451,95807462,88012,2,Cnot1-202,18717,Cnot1-202;Cnot1-201;Cnot1-203;Cnot1-216;Cnot1-217;Cnot1-207;Cnot1-209,Cnot1;Cnot1;Cnot1;Cnot1;Cnot1;Cnot1;Cnot1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,24,234594,ENSMUSG00000036550,conserved gene and region,8,95788711,95788768,58,*,58,7,0.672413793,1.16,0.120689655,0.00000369,CpGisland,TRUE,U10,Tr-S
2110,cg14620112,0.000194829,0.0000283,6.87561464,3.41E-11,gain,yes,-0.0000547,0.0000481,-1.136242691,0.25673262,neg,ns,0.008404037,0.014103239,0.595894099,0.551680796,pos,ns,0.258312133,0.000216692,0.000485009,0.446778756,0.655346772,pos,ns,0.422295801,Skida1,Skida1_Promoter,2,18050739,18050788,18050739,18050740,50,-,CGTGATATTTCAGGCTTTAAACGTAACCGAGAGGCAGCAATGAACAATGC,Promoter (1-2kb),2,18044083,18049051,4969,2,Skida1-202,-1737,Mllt10-201;Skida1-202;Skida1-201;Skida1-203;Skida1-204,Mllt10;Skida1;Skida1;Skida1;Skida1,0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,12,31,72668,ENSMUSG00000054074,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17260,cg23549680,-0.0000298,0.0000141,-2.108644866,0.035777241,loss,ns,0.0000273,0.000024,1.136220909,0.256741719,pos,ns,-0.016492526,0.007037743,-2.343439676,0.019738526,neg,ns,1.704685287,0.00039073,0.000242027,1.614403156,0.107457358,pos,ns,0.41584958,Nog,Nog_Intergenic_upstream,11,89318564,89318613,89318564,89318565,50,+,CGCCTGCCCCCAGCACTAGCAGCACCCAGCTTCAATTCGCAGGGAGACAA,Distal Intergenic,11,89300638,89302332,1695,2,Nog-201,-16232,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,36,18121,ENSMUSG00000048616,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12419,cg15993931,-0.00000516,0.00000191,-2.702294262,0.007265604,loss,ns,0.00000369,0.00000325,1.136059776,0.256809041,pos,ns,0.000117092,0.000950846,0.123145359,0.902071793,pos,ns,0.044758897,0.0000286,0.0000327,0.875037322,0.382231045,pos,ns,0.05511242,Klf7,Klf7_Promoter,1,64121642,64121691,64121642,64121643,50,-,CGTCCATTAGGCCGCGTGTGACCATGTAAGGTAAACAGGGGGCTCATGAA,Promoter (<=1kb),1,64079103,64122282,43180,2,Klf7-203,591,Klf7-202;Klf7-201;Klf7-203,Klf7;Klf7;Klf7,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,3,21,93691,ENSMUSG00000025959,mapped to different genes,1,64121602,64121657,56,*,56,9,0.714285714,1.272727273,0.160714286,4.27E-09,CpGisland,TRUE,U1,Pr-A
15602,cg06899068,-0.0000276,0.00000536,-5.15241202,0.000000459,loss,yes,-0.0000103,0.0000091,-1.1360223,0.2568247,neg,ns,-0.002948114,0.002666046,-1.105800065,0.269670495,neg,ns,0.569166568,-0.0000292,0.0000917,-0.3179905,0.750706244,neg,ns,0.930005398,Nfib,Nfib_Intergenic_downstream,4,82154142,82154191,82154190,82154191,50,-,ATAAAAAACAGCTGCAGCTAGTTCTTTGGTTACTAAATGGGAACTGGACG,Distal Intergenic,4,82498544,82499316,773,2,Nfib-211,345174,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,66,18028,ENSMUSG00000008575,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12456,cg27113943,-0.00000465,0.00000787,-0.591246128,0.55478638,loss,ns,-0.0000152,0.0000134,-1.135999142,0.256834378,neg,ns,-0.012562684,0.00391588,-3.208138319,0.001475697,neg,ns,2.831002714,0.000402448,0.000134667,2.988473434,0.003027888,pos,ns,0.768750158,Gm13577,Gm13577_Intergenic_downstream,2,64369886,64369935,64369886,64369887,50,+,CGTGGATTCTGGCTCACAAAAGCACCACGGGCCTCTGGCTGTGCTCTGTA,Distal Intergenic,2,64474745,64474949,205,2,Gm13577-201,105014,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,17,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12655,cg07878960,-0.00000135,0.00000173,-0.779572174,0.436237486,loss,ns,0.00000334,0.00000294,1.1359734,0.256845134,pos,ns,0.000924445,0.00086066,1.074112329,0.283607682,pos,ns,0.54728201,-0.0000433,0.0000296,-1.461263194,0.144956079,neg,ns,0.964375619,Herc1,Herc1_Exon,9,66418386,66418435,66418434,66418435,50,+,CATGTTACAGAAATCTTTCAGTGTTTCCTCTCAGCCCGTGAAGTAGCTCG,"Exon (Herc1-201/Herc1, exon 23 of 78)",9,66350526,66508775,158250,1,Herc1-201,67860,Herc1-201,Herc1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,15,15,235439,ENSMUSG00000038664,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6764,cg20615449,0.0000575,0.00000579,9.922052549,2.49E-20,gain,yes,-0.0000112,0.00000984,-1.135906836,0.256872951,neg,ns,0.006289185,0.002883427,2.181149552,0.029923554,pos,ns,1.523986823,-0.000130813,0.0000992,-1.319199522,0.188075976,neg,ns,0.094003997,Lhx2,Lhx2_Intron,2,38357322,38357371,38357370,38357371,50,+,GAGGCGAAGTCAGATTTGATTACAGGTTCAGTCCCAGCGACAAGAGCTCG,"Intron (Lhx2-203/Lhx2, intron 3 of 4)",2,38339281,38369199,29919,1,Lhx2-203,18041,Lhx2-203;Lhx2-204;Lhx2-202;Lhx2-201;Lhx2-207;Lhx2-205;Lhx2-206,Lhx2;Lhx2;Lhx2;Lhx2;Lhx2;Lhx2;Lhx2,0;0;0;0;5554;4790;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,33,16870,ENSMUSG00000000247,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
20630,cg14475241,-0.00000307,0.0000039,-0.787865127,0.431377606,loss,ns,0.00000752,0.00000662,1.135845819,0.256898452,pos,ns,-0.000187566,0.001940165,-0.096675423,0.923046627,neg,ns,0.03477636,-0.0000522,0.0000667,-0.782458158,0.434542639,neg,ns,0.875068782,Pou4f1,Pou4f1_Intergenic_downstream,14,104190936,104190985,104190984,104190985,50,+,ATGAATTTCACCACCAAAAACACAACAACTTCTCCAATCATAAAATACCG,Distal Intergenic,14,104463973,104465365,1393,2,Pou4f1-202,274380,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,31,18996,ENSMUSG00000048349,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18951,cg03554311,0.00000493,0.0000029,1.700945542,0.089956004,gain,ns,-0.00000559,0.00000492,-1.135778575,0.256926558,neg,ns,0.0000604,0.00144285,0.041832914,0.966658827,pos,ns,0.014726779,-0.0000358,0.0000496,-0.722084638,0.470786766,neg,ns,0.95618714,Mitf,Mitf_threeUTR,6,98010422,98010471,98010470,98010471,50,+,ATGACCGCATTAAAGAACTAGGTACTTTGATTCCCAAGTCAAATGATCCG,3' UTR,6,97807052,98018593,211542,1,Mitf-207,203370,Mitf-207;Mitf-202;Mitf-203;Mitf-204;Mitf-201;Mitf-205;Mitf-208,Mitf;Mitf;Mitf;Mitf;Mitf;Mitf;Mitf,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,16,17342,ENSMUSG00000035158,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8867,cg00200794,-0.00000385,0.0000024,-1.602259398,0.110116687,loss,ns,0.00000464,0.00000409,1.135651867,0.256979522,pos,ns,0.000825408,0.001196847,0.689651672,0.490929181,pos,ns,0.308981152,-0.0000569,0.0000412,-1.38318657,0.167603022,neg,ns,0.941676392,Gtpbp2,Gtpbp2_threeUTR,17,46165106,46165155,46165106,46165107,50,+,CGCCACCTGCATGAGATTCAGTCTGGCCGAACCTCCAGCATCAGCTTCGA,3' UTR,17,46161032,46169368,8337,1,Gtpbp2-211,4074,Gtpbp2-211;Gtpbp2-201;Gtpbp2-203;Gtpbp2-217;Gtpbp2-206;Gtpbp2-204;Gtpbp2-216;Gtpbp2-209;Gtpbp2-215;Gtpbp2-214;Gtpbp2-212;Gtpbp2-202;Gtpbp2-205;Gtpbp2-213;Gtpbp2-210;Gtpbp2-208;Gtpbp2-207,Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2,0;0;4057;0;3995;3945;3811;2073;0;0;0;0;0;-1712;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,7,7,56055,ENSMUSG00000023952,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26232,cg26917873,-0.0000206,0.00000622,-3.317563854,0.001016113,loss,ns,0.000012,0.0000106,1.13561996,0.256992861,pos,ns,0.006625543,0.003095244,2.140555723,0.033089831,pos,ns,1.48030545,-0.000230565,0.000106445,-2.166046061,0.031069645,neg,ns,0.112859426,Dhrs3,Dhrs3_fiveUTR,4,144892805,144892854,144892805,144892806,50,-,CGTTGCTGGCAATCAGATCGCGTTTAAGCAATTTCCTGAGCCCAAGAATA,Promoter (<=1kb),4,144892827,144927642,34816,1,Dhrs3-202,0,Dhrs3-202;Dhrs3-207;Dhrs3-206;Dhrs3-203;Dhrs3-205;Dhrs3-201,Dhrs3;Dhrs3;Dhrs3;Dhrs3;Dhrs3;Dhrs3,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,5,20148,ENSMUSG00000066026,conserved gene and region,4,144892683,144892878,196,*,196,18,0.62244898,0.954545455,0.091836735,2.31E-13,CpGisland,TRUE,U1,Pr-A
2864,cg13897219,0.0000188,0.00000491,3.829051902,0.000155659,gain,ns,0.00000947,0.00000834,1.135538659,0.25702685,pos,ns,0.005839592,0.002444326,2.38903942,0.017490214,pos,ns,1.75720488,-0.000149153,0.0000841,-1.774357954,0.076985378,neg,ns,0.524285656,Zfp503,Zfp503_Promoter,14,21994519,21994568,21994567,21994568,50,+,ACGAGACACCAAATACTTCGTATCGCCTTTAAATGGGAACACATTTTCCG,Promoter (4-5kb),14,21983959,21989601,5643,2,Zfp503-201,-4918,Zfp503-201,Zfp503,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,18,27,218820,ENSMUSG00000039081,mapped to different genes,14,21994122,21994568,447,*,447,26,0.579418345,0.69759904,0.058165548,4.29E-14,CpGisland,TRUE,U3,Pr-B
17055,cg05151611,0.0000698,0.0000113,6.173555892,2.09E-09,gain,yes,-0.0000218,0.0000192,-1.135534781,0.257028472,neg,ns,0.008077853,0.00562844,1.43518498,0.152242535,pos,ns,0.817463993,-0.000365203,0.000193562,-1.886755486,0.060127547,neg,ns,0.371396404,Grm5,Grm5_Exon,7,88116177,88116226,88116225,88116226,50,+,TGTTCATGCTCACCAGGTACAAAGACAGGAGACTGGCCCAGCACAAGTCG,"Exon (Grm5-204/Grm5, exon 8 of 9)",7,87584393,88134907,550515,1,Grm5-202,531784,Grm5-202;Grm5-204;Grm5-201,Grm5;Grm5;Grm5,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,108071,ENSMUSG00000049583,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24464,cg13392367,-0.00000119,0.00000348,-0.342259229,0.732387743,loss,ns,-0.00000671,0.00000591,-1.13550318,0.257041684,neg,ns,0.0000403,0.001732206,0.023236704,0.981476411,pos,ns,0.008120134,0.0000655,0.0000596,1.099906485,0.272226269,pos,ns,0.914031894,Ago1,Ago1_threeUTR,4,126439995,126440044,126439995,126439996,50,-,CGGTTGTCATCCCAAAGAACATAGTAATGGGATGGTCGGCTGGTGCCCTG,3' UTR,4,126435012,126468421,33410,2,Ago1-207,28377,Ago1-207;Ago1-201;Ago1-206;Ago1-202;Ago1-205;Ago1-204,Ago1;Ago1;Ago1;Ago1;Ago1;Ago1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,11,13,236511,ENSMUSG00000041530,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3961,cg00687049,-0.0000288,0.0000113,-2.53855551,0.011620073,loss,ns,0.0000218,0.0000192,1.135277271,0.25713615,pos,ns,-0.002289241,0.005638099,-0.406030618,0.685000228,neg,ns,0.164309284,0.000172193,0.000193894,0.888077935,0.375187358,pos,ns,0.593803701,Camsap1,Camsap1_Exon,2,25952744,25952793,25952744,25952745,50,-,CGTCTCTCATCAAATCCTCCAACAACGGGAAGTAGGGTGACTGCCTAGCA,"Exon (Camsap1-201/Camsap1, exon 5 of 17)",2,25926838,25983282,56445,2,Camsap1-201,30489,Camsap1-201;Camsap1-202;Camsap1-209;Camsap1-212;Camsap1-205;Camsap1-204;Camsap1-211;Camsap1-208;Camsap1-207,Camsap1;Camsap1;Camsap1;Camsap1;Camsap1;Camsap1;Camsap1;Camsap1;Camsap1,0;0;0;0;0;0;0;0;30415,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,227634,ENSMUSG00000026933,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21463,cg04690272,0.00000328,0.00000612,0.535451456,0.592721633,gain,ns,0.0000118,0.0000104,1.135097433,0.257211368,pos,ns,-0.00209072,0.003044341,-0.686756272,0.492749716,neg,ns,0.307373617,0.000059,0.000104695,0.563159097,0.573733638,pos,ns,0.830117132,Lrp8,Lrp8_Exon,4,107870100,107870149,107870148,107870149,50,-,AGCTTTTTGTCTTGCCGGGGGAACCAAGGTCACAGCTGCACCAACTCCCG,"Exon (Lrp8-220/Lrp8, exon 17 of 18)",4,107801869,107873898,72030,1,Lrp8-220,68231,Lrp8-220;Lrp8-202;Lrp8-209;Lrp8-204;Lrp8-221;Lrp8-201;Lrp8-217;Lrp8-206;Lrp8-218;Lrp8-203;Lrp8-211;Lrp8-205;Lrp8-219;Lrp8-214;Lrp8-223,Lrp8;Lrp8;Lrp8;Lrp8;Lrp8;Lrp8;Lrp8;Lrp8;Lrp8;Lrp8;Lrp8;Lrp8;Lrp8;Lrp8;Lrp8,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,16975,ENSMUSG00000028613,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4087,cg22466026,-0.00000376,0.00000097,-3.872246395,0.00013155,loss,ns,0.00000187,0.00000165,1.135042459,0.257234365,pos,ns,0.000876432,0.000483002,1.814550145,0.070559533,pos,ns,1.151444302,-0.0000252,0.0000166,-1.519770444,0.129587918,neg,ns,0.037590013,Smarca2,Smarca2_fiveUTR,19,26748492,26748541,26748492,26748493,50,+,CGGAAACTGGGGGTTTGCTTCTGTGATTTATTTCATTATTGTGCTGGTAA,Promoter (<=1kb),19,26748514,26752024,3511,1,Smarca2-243,0,Smarca2-216;Smarca2-201;Smarca2-209;Smarca2-202;Smarca2-206;Smarca2-239;Smarca2-215;Smarca2-223;Smarca2-214;Smarca2-211;Smarca2-229;Smarca2-225;Smarca2-240;Smarca2-242;Smarca2-227;Smarca2-204;Smarca2-221;Smarca2-246;Smarca2-244;Smarca2-203;Smarca2-237;Smarca2-220;Smarca2-238;Smarca2-210;Smarca2-213;Smarca2-228;Smarca2-218;Smarca2-241;Smarca2-233;Smarca2-243;Smarca2-230;Smarca2-205;Smarca2-234;Smarca2-224;Smarca2-231;Smarca2-207;Smarca2-226,Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;-1748;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,6,8,67155,ENSMUSG00000024921,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7120,cg17115006,0.0000197,0.00000939,2.09481282,0.036999008,gain,ns,0.0000181,0.000016,1.13500207,0.25725126,pos,ns,0.004099621,0.004675545,0.876822172,0.381262201,pos,ns,0.418776249,-0.000113687,0.000160792,-0.707044788,0.480069785,neg,ns,0.447009695,Gpr6,Gpr6_Exon,10,41070569,41070618,41070569,41070570,50,+,CGCTGGATCTCCTGGTTGCGGAAGGCATAGATGATGGGATTGATCATGGA,"Exon (Gpr6-201/Gpr6, exon 2 of 2)",10,41069977,41072285,2309,2,Gpr6-201,1667,Gpr6-201,Gpr6,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,140741,ENSMUSG00000046922,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
15461,cg18619814,0.000159054,0.0000233,6.820619977,4.76E-11,gain,yes,-0.000045,0.0000396,-1.13497801,0.257261326,neg,ns,0.041579145,0.01160636,3.582444948,0.000395113,pos,ns,3.403279129,-0.001015535,0.000399142,-2.544296939,0.011434709,neg,ns,0.352768978,Srsf5,Srsf5_Exon,12,80948564,80948613,80948612,80948613,50,+,CAAGTGGGTGGCGAAGAGCCAGTCGGGCATATGTCATGAAGGTTTCTCCG,"Exon (Srsf5-207/Srsf5, exon 5 of 7)",12,80945504,80950507,5004,1,Srsf5-201,3060,Slc10a1-202;Slc10a1-201;Srsf5-201;Srsf5-204;Srsf5-207;Srsf5-202;Srsf5-203;Srsf5-212;Srsf5-211;Srsf5-206;Srsf5-208;Srsf5-210;Srsf5-205;Srsf5-209,Slc10a1;Slc10a1;Srsf5;Srsf5;Srsf5;Srsf5;Srsf5;Srsf5;Srsf5;Srsf5;Srsf5;Srsf5;Srsf5;Srsf5,20092;19466;0;0;0;0;0;0;3030;0;2994;2985;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,10,20384,ENSMUSG00000021134,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27931,cg09328439,-0.0000294,0.00000558,-5.274161997,0.000000251,loss,yes,-0.0000108,0.00000948,-1.134926641,0.257282817,neg,ns,-0.012215661,0.002776311,-4.399961978,0.0000149,neg,ns,4.826538007,0.000243141,0.0000955,2.546594547,0.011361272,pos,ns,0.83024101,Rps6kc1,Rps6kc1_Intergenic_downstream,1,190654226,190654275,190654226,190654227,50,+,CGAGGCAGATGGGTAATTACGAAGCTAATAGTCTGATTGAGAGAAATCAG,Distal Intergenic,1,190808888,190810463,1576,2,Rps6kc1-207,156188,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,14,29,320119,ENSMUSG00000089872,conserved gene and region,1,190654118,190654246,129,*,129,9,0.558139535,0.895833333,0.069767442,0.00000752,CpGisland,TRUE,U15,NS
23451,cg09890286,0.0000124,0.00000512,2.416865673,0.0162319,gain,ns,0.00000987,0.0000087,1.134772488,0.257347317,pos,ns,-0.001256372,0.002549415,-0.492808058,0.622497088,neg,ns,0.205862676,-0.0000294,0.0000877,-0.335465649,0.737500762,neg,ns,0.805854974,Rbfox3,Rbfox3_Exon,11,118492625,118492674,118492625,118492626,50,+,CGGCAGAGGCTAGCCTGCAACATCAAAGATGAAAAACAGCCAATCAGTAC,"Exon (Rbfox3-201/Rbfox3, exon 15 of 15)",11,118489762,118909550,419789,2,Rbfox3-205,416876,Engase-202;Engase-208;Engase-201;Engase-204;Engase-207;Rbfox3-205;Rbfox3-203;Rbfox3-201;Rbfox3-202;Rbfox3-204;Rbfox3-206;Rbfox3-210,Engase;Engase;Engase;Engase;Engase;Rbfox3;Rbfox3;Rbfox3;Rbfox3;Rbfox3;Rbfox3;Rbfox3,15796;15665;15653;15642;10236;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,13,52897,ENSMUSG00000025576,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12404,cg20959523,0.0000344,0.00000406,8.462222311,1.06E-15,gain,yes,-0.00000783,0.0000069,-1.134766626,0.25734977,neg,ns,0.005107497,0.002022284,2.525608696,0.01204793,pos,ns,1.91908757,-0.000172675,0.0000695,-2.482881976,0.013561203,neg,ns,0.060594945,Fign,Fign_fiveUTR,2,64097971,64098020,64097971,64097972,50,-,CGGACTGCAGCCTCTGCCATGTTGGAATTTCAAACCCAAAACAGCTGCTT,Promoter (<=1kb),2,63971507,64098012,126506,2,Fign-203,0,Fign-203;Fign-201;Fign-202;Fign-204,Fign;Fign;Fign;Fign,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,84,60344,ENSMUSG00000075324,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
18174,cg13946460,-0.0000274,0.00000802,-3.409812032,0.000736125,loss,ns,0.0000155,0.0000136,1.134652739,0.25739743,pos,ns,0.002248528,0.003992158,0.563236241,0.573681178,pos,ns,0.241329398,-0.0000522,0.00013729,-0.380154159,0.704091314,neg,ns,0.685557946,Slc12a3,Slc12a3_Exon,8,94324309,94324358,94324357,94324358,50,-,TGCAGCTGGTGTTGTGAATCAGGCCGACGAGCAGCGCATCCTCTTACCCG,Promoter (4-5kb),8,94329201,94366214,37014,1,Slc12a3-201,-4892,Slc12a3-201;Slc12a3-205;Slc12a3-204,Slc12a3;Slc12a3;Slc12a3,-4843;-4847;-4852,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,20497,ENSMUSG00000031766,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17109,cg03204923,-0.000000552,0.00000267,-0.206784077,0.836314246,loss,ns,-0.00000515,0.00000454,-1.134631447,0.257406341,neg,ns,-0.001195228,0.001328772,-0.899498025,0.36908562,neg,ns,0.432872875,0.0000384,0.0000457,0.841203349,0.400882429,pos,ns,0.919395463,Msi2,Msi2_Intron,11,88443697,88443746,88443745,88443746,50,+,TCGTTCTAGCACCTAATTTTCAAGCCATTTTCCCCACTTATTTAATCACG,"Intron (Msi2-203/Msi2, intron 7 of 13)",11,88339382,88718229,378848,2,Msi2-203,274483,Msi2-203;Msi2-201;Msi2-207,Msi2;Msi2;Msi2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,21,36,76626,ENSMUSG00000069769,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17099,cg12399382,-0.00000161,0.00000301,-0.53610238,0.592272252,loss,ns,0.0000058,0.00000511,1.134434333,0.257488847,pos,ns,0.003399656,0.0014984,2.268857105,0.023964179,pos,ns,1.620437439,-0.0000968,0.0000515,-1.879065003,0.06117367,neg,ns,0.933608196,Msi2,Msi2_Intron,11,88393739,88393788,88393787,88393788,50,-,TTGCACTAAAATACCATTCTCTCGCCTTTAAATTTCTAATTATTGTTGCG,"Intron (Msi2-203/Msi2, intron 9 of 13)",11,88339382,88718229,378848,2,Msi2-203,324441,Msi2-203;Msi2-201;Msi2-207,Msi2;Msi2;Msi2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,21,36,76626,ENSMUSG00000069769,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27784,cg21419672,-0.00000559,0.00000497,-1.12656779,0.260796575,loss,ns,0.00000957,0.00000844,1.134396378,0.257504735,pos,ns,0.005370718,0.002471429,2.173122087,0.030528068,pos,ns,1.515300677,-0.000175442,0.000085,-2.064210346,0.039829476,neg,ns,0.565329646,Gm3809,Gm3809_Promoter,1,186956237,186956286,186956285,186956286,50,+,TGTTTACTAGTGGGTAATTAATTCTCCACATATGTTGGGAACATCTGTCG,Promoter (4-5kb),1,186960508,186961513,1006,1,Gm3809-201,-4222,Gm3809-201,Gm3809,-4222,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,8,100042375,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21548,cg11918976,0.0000194,0.00000615,3.154704929,0.001764198,gain,ns,-0.0000119,0.0000105,-1.134263628,0.257560313,neg,ns,0.002402225,0.003062085,0.784506532,0.433342016,pos,ns,0.3631692,0.0000292,0.000105305,0.277650804,0.781465502,pos,ns,0.081843492,Sypl2,Sypl2_Exon,3,108226115,108226164,108226115,108226116,50,+,CGACTCACCCACTGGAGAACTTTGATGAAGCCCAGCGGCTCCTCCAGCCG,Promoter (<=1kb),3,108211472,108226648,15177,2,Sypl2-201,484,Sypl2-201;Sypl2-202,Sypl2;Sypl2,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,2,17306,ENSMUSG00000027887,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
23430,cg26390542,0.0000249,0.00000991,2.514616727,0.012422139,gain,ns,-0.0000191,0.0000168,-1.134184195,0.257593572,neg,ns,0.017593909,0.004934569,3.565439699,0.000420548,pos,ns,3.376183994,-0.000649896,0.000169699,-3.829687908,0.000155276,neg,ns,0.12400199,Dpyd,Dpyd_Intergenic_upstream,3,118430197,118430246,118430245,118430246,50,-,GTCAGTGTTTTCCGTTTTCCTATTTTAACGTTTGTGTATAGTGGCAGGCG,Distal Intergenic,3,118562129,119432924,870796,1,Dpyd-201,-131932,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,29,99586,ENSMUSG00000033308,mapped to different genes,3,118430209,118430683,475,*,475,25,0.543157895,0.713770512,0.052631579,1.35E-12,CpGisland,TRUE,U13,Hc-P
9460,cg21118011,0.000000726,0.00000292,0.248856976,0.803636207,gain,ns,-0.00000562,0.00000496,-1.133997989,0.257671551,neg,ns,-0.00477491,0.001451738,-3.289099364,0.001120767,neg,ns,2.950484551,-0.0000368,0.0000499,-0.736253426,0.462133239,neg,ns,0.925649847,Phf2,Phf2_threeUTR,13,48802084,48802133,48802084,48802085,50,-,CGTCCCTCCAAACAGGACAAGTGGGAGTGGATAAGGCCTCCACCAAGCTG,3' UTR,13,48801750,48871119,69370,2,Phf2-201,68986,Phf2-201,Phf2,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,18676,ENSMUSG00000038025,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26993,cg23750795,0.00000915,0.00000543,1.684957831,0.093003079,gain,ns,0.0000105,0.00000922,1.133881326,0.257720415,pos,ns,0.002945658,0.002701696,1.090299596,0.276427949,pos,ns,0.558418049,0.00016374,0.0000929,1.762334921,0.078998183,pos,ns,0.838839251,Gdf5,Gdf5_Exon,2,155942147,155942196,155942147,155942148,50,-,CGGAAGAGCTTCCAGATGTCGAACACCTCCCAGCCAGATCCGTCCAGGCC,"Exon (Gm15557-201/Gm15557, exon 2 of 2)",2,155941023,155945367,4345,2,Gdf5-201,3171,Gdf5-201;Gm15557-201,Gdf5;Gm15557,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,6,14563,ENSMUSG00000038259,mapped to different genes,2,155941967,155942331,365,*,365,24,0.616438356,0.697119211,0.065753425,3.01E-14,CpGisland,TRUE,U11,Tr-P
10443,cg09706768,-0.0000131,0.0000061,-2.152519594,0.032128004,loss,ns,-0.0000117,0.0000104,-1.133704299,0.257794575,neg,ns,-0.009551281,0.003033955,-3.148128598,0.0018031,neg,ns,2.74398024,0.0000884,0.000104337,0.847118353,0.397582664,pos,ns,0.853392909,Npas3,Npas3_Intron,12,53566822,53566871,53566822,53566823,50,-,CGTCCAGTTCTGTGCCTGGCAGCTGGTGATGCATTATAGAGACATTGAGC,"Intron (Npas3-204/Npas3, intron 2 of 10)",12,53248157,54069532,821376,1,Npas3-204,318665,Npas3-204;Npas3-201;Npas3-203,Npas3;Npas3;Npas3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,83,103,27386,ENSMUSG00000021010,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19818,cg08299544,0.000000598,0.00000226,0.264751513,0.791376835,gain,ns,-0.00000435,0.00000384,-1.133523192,0.257870459,neg,ns,-0.003400614,0.001124729,-3.023495124,0.002707423,neg,ns,2.567443953,0.0000714,0.0000387,1.845247779,0.065955098,pos,ns,0.958020819,Nr4a1,Nr4a1_Exon,15,101271763,101271812,101271811,101271812,50,+,ATCTGCCTGGCTAACAAGGACTGCCCTGTGGACAAGAGGCGGCGAAACCG,"Exon (Nr4a1-202/Nr4a1, exon 4 of 8)",15,101254269,101274795,20527,1,Nr4a1-202,17494,Nr4a1-202;Nr4a1-203;Nr4a1-201;Nr4a1-204,Nr4a1;Nr4a1;Nr4a1;Nr4a1,0;4917;0;-1049,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,15370,ENSMUSG00000023034,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14285,cg23571447,0.0000464,0.00000741,6.262942458,1.26E-09,gain,yes,0.0000143,0.0000126,1.133495827,0.257881926,pos,ns,0.019177898,0.003689713,5.197666578,0.000000367,pos,ns,6.435514775,-0.000308082,0.000126889,-2.427965577,0.0157527,neg,ns,0.126018163,Gsx2,Gsx2_Promoter,5,75071872,75071921,75071872,75071873,50,+,CGGGCTATATCGGGTAAGATGTGCCACAGACAGCAATATCACAATGCCAC,Promoter (3-4kb),5,75075601,75077893,2293,1,Gsx2-201,-3680,Gsx2-201;Gsx2-202,Gsx2;Gsx2,-3680;-3681,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,5,10,14843,ENSMUSG00000035946,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
9632,cg17247323,-0.00000144,0.0000103,-0.139749389,0.888948753,loss,ns,-0.0000198,0.0000175,-1.133493622,0.25788285,neg,ns,-0.013911315,0.005126624,-2.713543187,0.007029079,neg,ns,2.15310155,0.000432562,0.000176304,2.453500341,0.014697504,pos,ns,0.357898954,Dbx1,Dbx1_Intron,7,49634422,49634471,49634422,49634423,50,-,CGTGAATGGTAATTGTGTAGTAATGAACTAACAGAAAAAGACTGAGGACA,"Intron (Dbx1-201/Dbx1, intron 2 of 3)",7,49631499,49636849,5351,2,Dbx1-201,2378,Dbx1-201,Dbx1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,18,13172,ENSMUSG00000030507,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
14077,cg19584582,0.00000512,0.0000169,0.302844762,0.762211284,gain,ns,0.0000325,0.0000287,1.133464547,0.257895035,pos,ns,0.007885972,0.008406675,0.938060804,0.348943431,pos,ns,0.457244973,0.00032796,0.000289105,1.134399724,0.257503335,pos,ns,0.153376911,Evx2,Evx2_Intergenic_downstream,2,74651227,74651276,74651275,74651276,50,+,TCTAAACATATGCATCGTAATCAGTTCGGTCACACTTACAAGAACACGCG,Downstream (1-2kb),2,74655616,74659419,3804,2,Evx2-202,8143,Evx2-201;Evx2-202,Evx2;Evx2,0;8143,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,17,35,14029,ENSMUSG00000001815,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
18108,cg10737195,0.0000327,0.00000608,5.376194566,0.00000015,gain,yes,0.0000117,0.0000103,1.133428329,0.257910213,pos,ns,0.003575465,0.003027056,1.18116924,0.238440882,pos,ns,0.62261928,-0.0000535,0.0001041,-0.513465789,0.607991287,neg,ns,0.074625074,Pcdh9,Pcdh9_fiveUTR,14,93890269,93890318,93890269,93890270,50,-,CGGGCTGGCAAATTAGCAACTCCAGAGAACAAATTCACGGATTTGTCGTT,Promoter (<=1kb),14,93013410,93890669,877260,2,Pcdh9-208,351,Pcdh9-208;Pcdh9-204;Pcdh9-202;Pcdh9-207;Pcdh9-201;Pcdh9-206;Pcdh9-203;Pcdh9-205,Pcdh9;Pcdh9;Pcdh9;Pcdh9;Pcdh9;Pcdh9;Pcdh9;Pcdh9,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,10,211712,ENSMUSG00000055421,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12816,cg18768173,-0.00000674,0.0000102,-0.65950584,0.51006063,loss,ns,-0.0000197,0.0000174,-1.13337188,0.257933871,neg,ns,-0.01226778,0.0050874,-2.41140481,0.016472343,neg,ns,1.783244614,0.000328166,0.000174955,1.875716646,0.061633852,pos,ns,0.155077556,Tmem33,Tmem33_Intergenic_upstream,5,67228940,67228989,67228988,67228989,50,+,GTTAAACTTGACATTTGGTCTTCAGGGGGTTATCAGACAAATCTCTGTCG,Distal Intergenic,5,67260565,67291461,30897,1,Tmem33-201,-31576,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,22,22,67878,ENSMUSG00000037720,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
5593,cg11022831,-0.00000126,0.00000303,-0.415385115,0.678147363,loss,ns,-0.00000584,0.00000515,-1.133346587,0.257944472,neg,ns,-0.001734393,0.001509166,-1.149239349,0.2513432,neg,ns,0.59973286,0.000162656,0.0000519,3.134023523,0.001889224,pos,ns,0.946662641,Pbx3,Pbx3_Intron,2,34288877,34288926,34288925,34288926,50,+,CATTACTTATTTTTAAAAGTTCTCTGGTGCCCTAATGTAATATTCTTTCG,"Intron (C79798-201/C79798-201, intron 1 of 1)",2,34171457,34372038,200582,2,Pbx3-202,83112,Pbx3-202;Pbx3-201;Pbx3-210;Pbx3-206;Pbx3-207;Pbx3-209;Pbx3-204;Pbx3-205;Pbx3-203,Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,82,18516,ENSMUSG00000038718,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2722,cg25973323,-0.00000159,0.00000306,-0.51871654,0.604328497,loss,ns,0.00000589,0.0000052,1.133285848,0.25796993,pos,ns,0.004895355,0.001523601,3.213015226,0.001451669,pos,ns,2.838132546,-0.000175061,0.0000524,-3.341087419,0.000936562,neg,ns,0.938152848,Kat6b,Kat6b_Exon,14,21622056,21622105,21622056,21622057,50,+,CGACCGAAAAATAAATTAAAGCAACGATTGTTGTAGGTTGAGATCTTATC,"Exon (Kat6b-206/Kat6b, exon 6 of 17)",14,21499770,21672071,172302,1,Kat6b-206,122286,Kat6b-211;Kat6b-206;Kat6b-204;Kat6b-201;Kat6b-202;Kat6b-208;Kat6b-210;Kat6b-203;Kat6b-214;Kat6b-205;Kat6b-213,Kat6b;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,21,54169,ENSMUSG00000021767,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18023,cg21590691,-0.00000572,0.00000265,-2.1559765,0.031854612,loss,ns,0.00000511,0.00000451,1.133105121,0.258045691,pos,ns,0.001535119,0.001320897,1.162178901,0.246056753,pos,ns,0.608964711,-0.00000169,0.0000454,-0.037216616,0.970336244,neg,ns,0.947743365,Pola1,Pola1_Intron,X,93310706,93310755,93310754,93310755,50,-,GAATAATTGATTTGACAATTGTACCAGTGGATTTCAAACAGTTCTGTGCG,"Intron (Pola1-201/Pola1, intron 36 of 36)",20,93304767,93632155,327389,2,Pola1-201,321400,Pola1-201,Pola1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,59,62,18968,ENSMUSG00000006678,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5385,cg00839031,-0.0000202,0.00000928,-2.173940792,0.030465936,loss,ns,0.0000179,0.0000158,1.133048799,0.258069305,pos,ns,0.008298493,0.004619665,1.796341007,0.073413811,pos,ns,1.13422223,-0.000152479,0.00015887,-0.959772262,0.337917812,neg,ns,0.826250982,Kcnip1,Kcnip1_Intron,11,33708460,33708509,33708508,33708509,50,-,ATTATTTTTCACATTTAAAAACATGAACACAATTACCCAACAGTGGCACG,"Intron (Gm12120-201/Gm12120-201, intron 1 of 1)",11,33629339,33843461,214123,2,Kcnip1-202,134952,Kcnip1-202;Kcnip1-201;Kcnip1-203;Kcnip1-207;Kcnip1-205;Kcnip1-204,Kcnip1;Kcnip1;Kcnip1;Kcnip1;Kcnip1;Kcnip1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,4,70357,ENSMUSG00000053519,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20075,cg09275392,0.00000283,0.00000448,0.630320671,0.528949157,gain,ns,-0.00000863,0.00000762,-1.132971422,0.258101748,neg,ns,-0.002598242,0.002231625,-1.164282991,0.245204586,neg,ns,0.610471411,-0.0000517,0.0000767,-0.673153113,0.5013514,neg,ns,0.870443642,Stim1,Stim1_Exon,7,102430941,102430990,102430989,102430990,50,-,GGATCTCAGAGGTTGGTAGAGGGCGAGGCTGGCCACTTCTTGACAAGCCG,"Exon (Stim1-201/Stim1, exon 11 of 12)",7,102267806,102437318,169513,1,Stim1-201,163135,Stim1-201;Stim1-202;Stim1-209;Stim1-206;Stim1-207;Stim1-205;Stim1-204,Stim1;Stim1;Stim1;Stim1;Stim1;Stim1;Stim1,0;0;0;4968;0;4389;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,Exon,4,6,20866,ENSMUSG00000030987,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5009,cg00180917,0.00000435,0.00000173,2.518955436,0.012273214,gain,ns,-0.00000332,0.00000293,-1.132970631,0.25810208,neg,ns,0.00041153,0.000859478,0.478813373,0.632408948,pos,ns,0.199001994,-0.0000628,0.0000296,-2.123746143,0.034483005,neg,ns,0.035019834,Foxc1,Foxc1_fiveUTR,13,31806617,31806666,31806617,31806618,50,+,CGCCTGGGTGACGGATGCTCAAAAGTTCAGAAGTTTTCCCAATGCTTCCT,Promoter (<=1kb),13,31806633,31812476,5844,1,Foxc1-201,0,Foxc1-201,Foxc1,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,7,17300,ENSMUSG00000050295,conserved gene but different region,13,31806142,31806629,488,*,488,46,0.678278689,0.861462891,0.094262295,6.01E-34,CpGisland,TRUE,U3,Pr-B
13114,cg06981817,-0.0000148,0.00000557,-2.651124994,0.008434606,loss,ns,0.0000107,0.00000946,1.132958495,0.258107168,pos,ns,0.00182664,0.002772211,0.658910793,0.51044217,pos,ns,0.292053454,-0.00014027,0.0000953,-1.471321124,0.142218656,neg,ns,0.928513169,Tcf4,Tcf4_Intron,18,69500452,69500501,69500500,69500501,50,+,TCGGTTTCATTCCGCTCACAATTCCCAAATGCTTGCATTATGGAAAATCG,"Intron (Tcf4-259/Tcf4, intron 5 of 6)",18,69343356,69564082,220727,1,Tcf4-259,157096,Tcf4-259;Tcf4-201;Tcf4-207;Tcf4-210;Tcf4-240;Tcf4-254;Tcf4-246;Tcf4-206;Tcf4-202;Tcf4-257;Tcf4-232;Tcf4-248;Tcf4-231;Tcf4-205;Tcf4-253;Tcf4-233;Tcf4-238;Tcf4-245;Tcf4-249;Tcf4-219;Tcf4-235;Tcf4-227;Tcf4-250;Tcf4-229;Tcf4-260;Tcf4-226;Tcf4-216;Tcf4-256,Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,42,66,21413,ENSMUSG00000053477,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2917,cg15601638,0.000000471,0.000000655,0.720204454,0.471941797,gain,ns,0.00000126,0.00000111,1.132955687,0.258108346,pos,ns,0.000499607,0.000325751,1.533704733,0.126122213,pos,ns,0.899208418,-0.0000181,0.0000112,-1.619385396,0.106381206,neg,ns,0.979215138,Ehbp1,Ehbp1_Exon,11,22053401,22053450,22053449,22053450,50,-,AAACTGTTTACAGTGTAATTGGGCACCGTACCTGTGTCCATGAGATAGCG,"Exon (Ehbp1-201/Ehbp1, exon 20 of 24)",11,22005828,22285838,280011,2,Ehbp1-201,232388,Ehbp1-201;Ehbp1-202;Ehbp1-207,Ehbp1;Ehbp1;Ehbp1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,45,216565,ENSMUSG00000042302,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5079,cg01992562,-0.00000175,0.0000026,-0.674796953,0.500307723,loss,ns,0.000005,0.00000442,1.132930587,0.258118871,pos,ns,-0.001802718,0.001294114,-1.393013803,0.164613732,neg,ns,0.783533938,-0.0000154,0.0000445,-0.345885063,0.729663709,neg,ns,0.932860353,Prrc2b,Prrc2b_Exon,2,32191606,32191655,32191606,32191607,50,+,CGTCTTAGATCTGTCGTATGGGCCAGGACCAAGCCTCCGCCCTCAGAGTA,"Exon (Prrc2b-201/Prrc2b, exon 6 of 30)",2,32151082,32234537,83456,1,Prrc2b-201,40524,Prrc2b-201;Prrc2b-202;Prrc2b-206,Prrc2b;Prrc2b;Prrc2b,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,6,227723,ENSMUSG00000039262,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27715,cg14421030,-0.0000178,0.0000101,-1.772326094,0.077322556,loss,ns,0.0000193,0.0000171,1.132854098,0.258150946,pos,ns,-0.0000514,0.005002297,-0.010271686,0.991811131,neg,ns,0.003571022,-0.00021609,0.000172029,-1.256129196,0.210014954,neg,ns,0.609796926,Kif26b,Kif26b_Intron,1,178800274,178800323,178800274,178800275,50,+,CGCCTTCTAAAATATGTCCTTTGTTATCAAGGGAAATCTGAGACAGAAAA,"Intron (Kif26b-202/Kif26b, intron 4 of 14)",1,178529125,178939200,410076,1,Kif26b-202,271149,Kif26b-202;Kif26b-201,Kif26b;Kif26b,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,3,269152,ENSMUSG00000026494,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7924,cg23535036,-0.00000229,0.00000174,-1.314597328,0.189617008,loss,ns,0.00000335,0.00000296,1.132853394,0.258151241,pos,ns,0.001505686,0.000865786,1.739095808,0.083010585,pos,ns,1.080866525,-0.0000357,0.0000298,-1.199834638,0.231119738,neg,ns,0.958266681,Gtdc1,Gtdc1_Intron,2,44632932,44632981,44632980,44632981,50,+,GGCCAGAGAGCTGACATGGCTCGCTTAGGTAATGGCAAACAAACAGCTCG,"Intron (Gtdc1-203/Gtdc1, intron 6 of 10)",2,44564412,44861622,297211,2,Gtdc1-203,228641,Gtdc1-203;Gtdc1-201;Gtdc1-205;Gtdc1-210;Gtdc1-204;Gtdc1-211,Gtdc1;Gtdc1;Gtdc1;Gtdc1;Gtdc1;Gtdc1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,43,227835,ENSMUSG00000036890,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9936,cg11632076,-0.00000194,0.00000148,-1.307731635,0.191933315,loss,ns,-0.00000285,0.00000252,-1.132828541,0.258161664,neg,ns,-0.000223432,0.000737347,-0.303021262,0.762076902,neg,ns,0.118001202,0.0000133,0.0000254,0.524275011,0.600461931,pos,ns,0.967215647,Strn3,Strn3_Exon,12,51629476,51629525,51629524,51629525,50,-,GCCTCCTCCAGATGGAAACGTTATTGGTTCAGCTATAAAGAACAAAACCG,"Exon (Strn3-201/Strn3, exon 10 of 18)",12,51609632,51691887,82256,2,Strn3-201,62362,Strn3-201;Strn3-202,Strn3;Strn3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,94186,ENSMUSG00000020954,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18792,cg06930673,-0.0000156,0.00000973,-1.607804105,0.108896055,loss,ns,0.0000187,0.0000165,1.132811003,0.258169019,pos,ns,0.001061346,0.004842594,0.219168823,0.826662772,pos,ns,0.08267162,0.000000814,0.000166536,0.004888378,0.996102799,pos,ns,0.767894969,Naa11,Naa11_Intron,5,97415933,97415982,97415933,97415934,50,+,CGTGATTATGTATGGGATCAGCATGATCGGCTGTCACTGGTTTCACTGAC,"Intron (4930467D21Rik-202/4930467D21Rik-202, intron 2 of 4)",5,97382198,97392379,10182,2,Naa11-201,-23554,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,4,97243,ENSMUSG00000046000,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25267,cg02071692,-0.000198579,0.0000198,-10.01187202,1.25E-20,loss,yes,0.0000382,0.0000337,1.132763352,0.258189004,pos,ns,0.027178828,0.009871755,2.753190955,0.006249814,pos,ns,2.204132873,-0.001071335,0.000339489,-3.155730403,0.001758202,neg,ns,0.490501853,Etv6,Etv6_Exon,6,134261764,134261813,134261812,134261813,50,-,GACAAAGAATCCAAAATATTCCGGATAGTGGATCCCAACGGACTGGCTCG,"Exon (Etv6-201/Etv6, exon 6 of 8)",6,134035700,134270155,234456,1,Etv6-201,226064,Etv6-201;Etv6-202;Etv6-205,Etv6;Etv6;Etv6,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,7,14011,ENSMUSG00000030199,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10377,cg00298697,0.0000283,0.00000753,3.760861577,0.000202397,gain,ns,-0.0000145,0.0000128,-1.132689171,0.258220117,neg,ns,-0.001087191,0.003748777,-0.290012125,0.772000852,neg,ns,0.11238222,-0.0000122,0.00012892,-0.094929915,0.924431826,neg,ns,0.199395339,Creb5,Creb5_fiveUTR,6,53287222,53287271,53287222,53287223,50,-,CGGACCGCAATGATTTAGAAGTTCAGGAATCCCACGTGACGTCACCGGGG,Promoter (<=1kb),6,53287270,53391409,104140,1,Creb5-214,0,Creb5-214;Creb5-203;Creb5-213;Creb5-208;Creb5-211;Creb5-210;Creb5-209;Creb5-204;Creb5-207;Creb5-215;Creb5-202,Creb5;Creb5;Creb5;Creb5;Creb5;Creb5;Creb5;Creb5;Creb5;Creb5;Creb5,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,7,12,231991,ENSMUSG00000053007,conserved gene but different region,6,53287053,53287268,216,*,216,28,0.703703704,1.047272727,0.12962963,4.44E-25,CpGisland,TRUE,U3,Pr-B
20093,cg21264443,0.0000176,0.00000563,3.119601299,0.001981198,gain,ns,-0.0000108,0.00000956,-1.132608301,0.258254039,neg,ns,0.002329875,0.002802048,0.831490276,0.40633672,pos,ns,0.391113929,-0.0000535,0.0000964,-0.554721841,0.579484933,neg,ns,0.696405171,Ngf,Ngf_Exon,3,102520612,102520661,102520660,102520661,50,-,AACATTAACAACAGTGTATTCAAACAGTACTTTTTTGAGACCAAGTGCCG,"Exon (Ngf-201/Ngf, exon 3 of 3)",3,102469919,102520848,50930,1,Ngf-201,50693,Ngf-201;Ngf-202;Ngf-204,Ngf;Ngf;Ngf,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,18049,ENSMUSG00000027859,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9159,cg03504115,0.0000131,0.0000101,1.299676807,0.194677381,gain,ns,0.0000194,0.0000171,1.132199051,0.258425751,pos,ns,0.005863132,0.00501698,1.168657735,0.243439459,pos,ns,0.613609026,0.000553806,0.000172534,3.209848625,0.001467229,pos,ns,0.419517433,Stox2,Stox2_Exon,8,47287924,47287973,47287972,47287973,50,-,GGGAAACGCTTGTGCAGGCGGTAGTCCTTCTCGCTGCGGGACCTCATGCG,"Exon (Stox2-201/Stox2, exon 1 of 4)",8,47180048,47289402,109355,2,Stox2-201,1429,Stox2-201;Stox2-209;Stox2-202;Stox2-208,Stox2;Stox2;Stox2;Stox2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,71069,ENSMUSG00000038143,conserved gene and region,8,47287911,47289523,1613,*,1613,199,0.712957223,0.970852086,0.123372598,2.14E-170,CpGisland,TRUE,U3,Pr-B
15894,cg05874561,0.00000998,0.0000026,3.835402128,0.00015187,gain,ns,0.00000501,0.00000442,1.132193893,0.258427915,pos,ns,0.000755626,0.001295397,0.583316241,0.560104552,pos,ns,0.251730898,0.0000485,0.0000445,1.088744937,0.277112051,pos,ns,0.04978487,Sfrp2,Sfrp2_Exon,3,83766700,83766749,83766700,83766701,50,-,CGAATACCAGAACATGCGGCTGCCCAACCTGCTGGGCCACGAGACCATGA,Promoter (<=1kb),3,83766321,83774316,7996,1,Sfrp2-201,379,Sfrp2-201;Sfrp2-202;Sfrp2-203,Sfrp2;Sfrp2;Sfrp2,0;0;-104,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,20319,ENSMUSG00000027996,conserved gene and region,3,83766337,83767061,725,*,725,73,0.686896552,0.872888904,0.100689655,9.57E-56,CpGisland,TRUE,U3,Pr-B
5522,cg02714730,0.00000673,0.00000301,2.237601386,0.02595727,gain,ns,-0.00000579,0.00000511,-1.132110816,0.258462782,neg,ns,-0.002362593,0.001497888,-1.577282352,0.115750446,neg,ns,0.936477326,0.0000768,0.0000515,1.490862996,0.137014276,pos,ns,0.944722171,Pbx3,Pbx3_threeUTR,2,34176769,34176818,34176769,34176770,50,-,CGACTTGGGACCCTTGGTAAGAATCCCCATTCAGACTCTGCATGTTCATG,3' UTR,2,34171457,34372038,200582,2,Pbx3-202,195220,Pbx3-202;Pbx3-201;Pbx3-210;Pbx3-206;Pbx3-207;Pbx3-209,Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,82,18516,ENSMUSG00000038718,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
204,cg09407361,-0.0000227,0.0000049,-4.638274364,0.00000519,loss,ns,-0.00000942,0.00000832,-1.132032044,0.258495846,neg,ns,-0.00418884,0.002436814,-1.718982285,0.086615877,neg,ns,1.062402492,0.000027,0.0000838,0.321773083,0.747841469,pos,ns,0.941921546,Bend7,Bend7_Exon,2,4763156,4763205,4763156,4763157,50,+,CGCTCAGGAAGCCTTCTGTTTAGAAAACTGGTGTGTGCGTTTTTTGATGA,"Exon (Bend7-204/Bend7, exon 6 of 9)",2,4717831,4800563,82733,1,Bend7-204,45325,Bend7-204;Bend7-202;Bend7-201;Bend7-203,Bend7;Bend7;Bend7;Bend7,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,209645,ENSMUSG00000048186,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14463,cg22769247,-0.0000111,0.00000312,-3.551442106,0.00044263,loss,ns,-0.00000599,0.00000529,-1.131982376,0.258516695,neg,ns,-0.004305781,0.001550944,-2.776233439,0.005833684,neg,ns,2.234057118,0.0000379,0.0000533,0.710105247,0.478172694,pos,ns,0.917591193,Zc3h3,Zc3h3_Intron,15,75789116,75789165,75789116,75789117,50,-,CGTGGATAATGAAGGCCAGGGAGGGAACAGTGCCTTAAGATAGTCTTCTT,"Intron (Zc3h3-201/Zc3h3, intron 4 of 11)",15,75754430,75841915,87486,2,Zc3h3-201,52750,Zc3h3-201;Zc3h3-203;Zc3h3-202,Zc3h3;Zc3h3;Zc3h3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,18,223642,ENSMUSG00000075600,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27066,cg03744408,-0.000058,0.0000137,-4.222871135,0.0000317,loss,ns,-0.0000264,0.0000233,-1.131972336,0.258520909,neg,ns,0.000393648,0.006834495,0.057597296,0.954106511,pos,ns,0.02040314,-0.000806996,0.000235038,-3.433475132,0.000676933,neg,ns,0.556673269,Blcap,Blcap_Exon,2,157561207,157561256,157561255,157561256,50,+,TTCAAGGTGTTCCTGGAATGCTGCATTTACTGGGTAGGATTCGCTTTTCG,"Exon (Nnat-208/Nnat, exon 2 of 3)",2,157556362,157566337,9976,2,Blcap-202,5081,Blcap-202;Blcap-201;Blcap-205;Blcap-204;Blcap-203;Nnat-205;Nnat-208;Nnat-202;Nnat-210;Nnat-207;Nnat-209;Nnat-206;Nnat-201;Nnat-204;Nnat-203,Blcap;Blcap;Blcap;Blcap;Blcap;Nnat;Nnat;Nnat;Nnat;Nnat;Nnat;Nnat;Nnat;Nnat;Nnat,0;0;0;0;5075;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,9,53619,ENSMUSG00000067787,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5088,cg15794057,-0.00000212,0.00000179,-1.185030271,0.236913131,loss,ns,0.00000344,0.00000304,1.131946158,0.258531898,pos,ns,0.00263904,0.000890007,2.965191536,0.003259784,pos,ns,2.486811134,-0.0000722,0.0000306,-2.36015148,0.018886692,neg,ns,0.955391727,Fbxo45,Fbxo45_Exon,16,32238614,32238663,32238614,32238615,50,+,CGGCCCTCACTGAAACCAATCTTGGTCCTTGCACCATCAGTGCTCTGAGC,"Exon (Fbxo45-201/Fbxo45, exon 2 of 3)",16,32230112,32247158,17047,2,Fbxo45-201,8495,Fbxo45-201,Fbxo45,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,268882,ENSMUSG00000035764,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8681,cg11545945,0.00000222,0.00000111,1.995542572,0.04685856,gain,ns,0.00000214,0.00000189,1.131922429,0.25854186,pos,ns,0.001451914,0.000554597,2.617962326,0.009279866,pos,ns,2.032458304,-0.0000465,0.0000191,-2.435797635,0.015422144,neg,ns,0.018935053,Poll,Poll_Intergenic_downstream,19,45541535,45541584,45541583,45541584,50,-,GTGATGACAAATGCCCGTTATCAGCGAACGAGGCCGATGACAAATGGGCG,Distal Intergenic,19,45552275,45560531,8257,2,Poll-201,18996,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,16,56626,ENSMUSG00000025218,mapped to different genes,19,45541549,45541978,430,*,430,53,0.730232558,0.933098592,0.123255814,8.53E-46,CpGisland,TRUE,NA,NRS
17653,cg23998139,0.0000187,0.00000247,7.545820714,5.04E-13,gain,yes,-0.00000475,0.0000042,-1.131811568,0.258588403,neg,ns,-0.000489631,0.001230151,-0.398024973,0.690885743,neg,ns,0.16059377,0.0000368,0.0000423,0.870713737,0.384584233,pos,ns,0.047519527,Zic4,Zic4_Intron,9,91367283,91367332,91367283,91367284,50,-,CGGGCGCGGTCTTTGTTGCCGACCAGGCTTTTGATCGCCAGAGAAAATTT,"Intron (Zic4-208/Zic4, intron 1 of 2)",9,91362413,91378915,16503,1,Zic4-208,4870,Zic1-201;Zic1-202;Zic1-203;Zic4-208;Zic4-206;Zic4-207;Zic4-211;Zic4-204;Zic4-203;Zic4-210;Zic4-209;Zic4-212,Zic1;Zic1;Zic1;Zic4;Zic4;Zic4;Zic4;Zic4;Zic4;Zic4;Zic4;Zic4,0;0;-4229;0;0;0;0;0;0;-3672;0;-4018,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,55,22774,ENSMUSG00000036972,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
2835,cg16990073,-0.00000809,0.00000231,-3.505478277,0.000523029,loss,ns,0.00000444,0.00000392,1.131784027,0.258599966,pos,ns,-0.000582106,0.001148496,-0.506842364,0.612625747,neg,ns,0.212804755,0.000000201,0.0000395,0.00508103,0.99594921,pos,ns,0.02982677,Gm43671,Gm43671_Intergenic_upstream,3,21936049,21936098,21936097,21936098,50,+,CTCTGGAAAGTAGCCGTGTAATAATACACAAACCCCTGATGATGTCAGCG,Distal Intergenic,3,22021197,22021629,433,1,Gm43671-201,-85099,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,3,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
141,cg03389662,0.000000754,0.00000198,0.380968269,0.70348774,gain,ns,-0.0000038,0.00000336,-1.131666343,0.258649382,neg,ns,0.000586265,0.000984767,0.595334411,0.552054302,pos,ns,0.258018201,-0.000059,0.0000339,-1.743244214,0.082282408,neg,ns,0.045263258,Kdm2a,Kdm2a_fiveUTR,19,4333891,4333940,4333891,4333892,50,+,CGCGGCTTCCTGTGCCTGCGAACAATGCTGCTGCGTCACCCACATGCAGC,Promoter (<=1kb),19,4329191,4333919,4729,2,Kdm2a-210,0,Kdm2a-201;Kdm2a-202;Kdm2a-212;Kdm2a-210,Kdm2a;Kdm2a;Kdm2a;Kdm2a,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,30,225876,ENSMUSG00000054611,conserved gene and region,19,4333891,4334071,181,*,181,11,0.651933702,0.572620075,0.060773481,0.00000179,CpGisland,TRUE,NA,NRS
10319,cg18685260,-0.00000422,0.0000024,-1.757567793,0.079808077,loss,ns,0.00000462,0.00000408,1.131665781,0.258649617,pos,ns,0.001104439,0.001196398,0.923136678,0.356653922,pos,ns,0.447752995,0.0000606,0.0000411,1.473593617,0.141605722,pos,ns,0.948179727,Jazf1,Jazf1_Intron,6,52967734,52967783,52967782,52967783,50,-,AAACTGCTCTAATTGCATTCTTCAAGCCAGCTGAAGGCTGACAGCTTCCG,"Intron (Jazf1-201/Jazf1, intron 1 of 4)",6,52768797,53068631,299835,2,Jazf1-201,100848,Jazf1-201,Jazf1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,231986,ENSMUSG00000063568,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24977,cg16162872,-0.000000985,0.00000162,-0.607958259,0.54366029,loss,ns,-0.00000311,0.00000275,-1.131471547,0.258731191,neg,ns,0.0000449,0.000806076,0.055666689,0.955643197,pos,ns,0.019704228,-0.0000121,0.0000277,-0.437641486,0.661950944,neg,ns,0.953674821,Pum1,Pum1_Exon,4,130764087,130764136,130764087,130764088,50,+,CGTGCCACACCAGCTGAGCGCCAGCTTGTCTTCAATGAAATCCTCCAGGC,"Exon (Pum1-201/Pum1, exon 16 of 22)",4,130663321,130781564,118244,1,Pum1-201,100766,Pum1-201;Pum1-204;Pum1-205;Pum1-203;Pum1-202,Pum1;Pum1;Pum1;Pum1;Pum1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,8,80912,ENSMUSG00000028580,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23095,cg25670483,-0.0000018,0.00000132,-1.363256103,0.173791084,loss,ns,0.00000254,0.00000225,1.131342533,0.258785383,pos,ns,0.002330994,0.000658584,3.539404145,0.000462486,pos,ns,3.334901682,-0.000148479,0.0000226,-6.55576052,2.31E-10,neg,yes,0.963732428,Rnf220,Rnf220_Exon,4,117297619,117297668,117297619,117297620,50,+,CGGAATAAAAAAAGGTCACTGGTGCTTTTTAAACATGGACCAAAAAGCAG,"Exon (Gm12843-201/Gm12843-201, exon 2 of 2)",4,117271463,117497052,225590,2,Rnf220-201,199384,Rnf220-201;Rnf220-202;Rnf220-208,Rnf220;Rnf220;Rnf220,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,15,152,66743,ENSMUSG00000028677,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12875,cg17480073,-0.00000569,0.0000038,-1.496932122,0.135428356,loss,ns,-0.00000731,0.00000646,-1.13110685,0.258884402,neg,ns,0.00162419,0.00189219,0.858365251,0.391353992,pos,ns,0.407430231,-0.000129272,0.0000651,-1.9865929,0.047847686,neg,ns,0.954689315,Gm47010,Gm47010_Intergenic_upstream,14,67617343,67617392,67617343,67617344,50,+,CGTAAGTGTTTTTAAGCTCCTTGGATATAGAGGTTATATAAATACAAAGC,Distal Intergenic,14,67588363,67588792,430,2,Gm47010-201,-28551,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,8,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1697,cg09892483,-0.00000434,0.00000244,-1.775682559,0.076766214,loss,ns,0.0000047,0.00000415,1.131040605,0.258912239,pos,ns,0.000659568,0.001216775,0.542062489,0.588164875,pos,ns,0.230500915,0.00000546,0.0000418,0.130569464,0.896200588,pos,ns,0.054986589,Tle4,Tle4_Exon,19,14596751,14596800,14596799,14596800,50,+,CGTTACCTGTGGTATTGAGCCTGTAAAAACTGAAACTCTTCCTTAATCCG,"Exon (Tle4-201/Tle4, exon 2 of 20)",19,14448150,14598051,149902,2,Tle4-201,1251,Tle4-201;Tle4-202;Tle4-203,Tle4;Tle4;Tle4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,29,21888,ENSMUSG00000024642,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
13601,cg24228707,0.000034,0.00000351,9.683588393,1.51E-19,gain,yes,-0.00000674,0.00000596,-1.131011109,0.258924634,neg,ns,0.001172232,0.001746612,0.671145897,0.502627355,pos,ns,0.298753879,0.0000635,0.0000601,1.056486624,0.291568565,pos,ns,0.078818396,Dlx1,Dlx1_fiveUTR,2,71528315,71528364,71528315,71528316,50,+,CGCCTTCAGCTGCGGATCTGAGCACTTGAGACTACCATTTAATCAAATGA,Promoter (<=1kb),2,71528113,71533980,5868,1,Dlx1-201,202,Dlx1-201;Dlx1-202;Dlx1-205;Dlx1-204;Dlx1-203;Dlx1-206;Metap1d-201;Metap1d-205;Metap1d-203,Dlx1;Dlx1;Dlx1;Dlx1;Dlx1;Dlx1;Metap1d;Metap1d;Metap1d,0;0;0;0;0;-2416;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,12,36,13390,ENSMUSG00000041911,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
19740,cg01778572,-0.0000142,0.00000583,-2.432191634,0.015573567,loss,ns,0.0000112,0.00000991,1.130987387,0.258934603,pos,ns,-0.007212754,0.002903004,-2.48458321,0.013497865,neg,ns,1.86973492,0.00010054,0.0000998,1.007075721,0.314683804,pos,ns,0.864860375,Gpat3,Gpat3_Intergenic_downstream,5,100982345,100982394,100982345,100982346,50,+,CGAAGAATTGTGGAAAGATTAATTGTCTACAGCTGTTTCATGGCCCACAG,Distal Intergenic,5,100846417,100846850,434,1,Gpat3-205,135928,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,15,15,231510,ENSMUSG00000029314,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16178,cg09452662,0.00000827,0.00000598,1.383217362,0.167593592,gain,ns,-0.0000115,0.0000102,-1.130801794,0.259012606,neg,ns,-0.007879173,0.002974107,-2.649256437,0.008480327,neg,ns,2.071587414,0.000194666,0.000102279,1.903278393,0.057930321,pos,ns,0.804833701,Lhx1,Lhx1_Intergenic_upstream,11,84554128,84554177,84554128,84554129,50,+,CGTTTATAGAGTCGCTAACAAAATGTTAAGTGGAAGTGTGTGTCAGATGG,Distal Intergenic,11,84518284,84525535,7252,2,Lhx1-201,-28593,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,20,23,16869,ENSMUSG00000018698,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26761,cg26772463,-0.0000153,0.00000538,-2.841261744,0.004791154,loss,ns,0.0000103,0.00000914,1.130770632,0.259025705,pos,ns,0.009443708,0.002678848,3.525286659,0.000486834,pos,ns,3.312618663,-0.000482994,0.0000921,-5.242794708,0.000000293,neg,yes,0.659011651,Iqsec2,Iqsec2_Intergenic_upstream,X,152131091,152131140,152131091,152131092,50,-,CGTTTCCACAGAGATGTGGGAGTTTGCAAATTTGTCTCAGTGGAGGGGAA,Distal Intergenic,20,152144268,152225235,80968,1,Iqsec2-207,-13177,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,16,245666,ENSMUSG00000041115,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13118,cg26700453,0.00000275,0.00000395,0.696014781,0.486941055,gain,ns,-0.00000758,0.00000671,-1.130755315,0.259032144,neg,ns,-0.000118041,0.001964478,-0.060087603,0.952124581,neg,ns,0.021306223,-0.0000407,0.0000676,-0.602141517,0.547520095,neg,ns,0.908465187,Tcf4,Tcf4_Intron,18,69516602,69516651,69516650,69516651,50,+,GGGGCTTGGCACTGCCACCATTGTCTTTGTGCCAAAAAATATCCGCAGCG,"Intron (Tcf4-259/Tcf4, intron 5 of 6)",18,69343356,69564082,220727,1,Tcf4-259,173246,Tcf4-259;Tcf4-201;Tcf4-207;Tcf4-210;Tcf4-240;Tcf4-254;Tcf4-246;Tcf4-206;Tcf4-202;Tcf4-257;Tcf4-232;Tcf4-248;Tcf4-231;Tcf4-205;Tcf4-253;Tcf4-233;Tcf4-238;Tcf4-245;Tcf4-249;Tcf4-219;Tcf4-235;Tcf4-227;Tcf4-250;Tcf4-229;Tcf4-260;Tcf4-226;Tcf4-216;Tcf4-256;Tcf4-230;Tcf4-221;Tcf4-234;Tcf4-258;Tcf4-217;Tcf4-247;Tcf4-252;Tcf4-218;Tcf4-209;Tcf4-208,Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,42,66,21413,ENSMUSG00000053477,conserved gene and region,18,69516614,69516797,184,*,184,15,0.543478261,1.115151515,0.081521739,1.96E-10,CpGisland,TRUE,U15,NS
19102,cg02335827,0.000018,0.00000383,4.699350246,0.00000393,gain,ns,0.00000737,0.00000651,1.130744814,0.259036558,pos,ns,0.008532025,0.001908639,4.470214195,0.000011,pos,ns,4.959682717,-0.000176754,0.0000656,-2.692863063,0.007469413,neg,ns,0.082572277,Foxd1,Foxd1_threeUTR,13,98359146,98359195,98359146,98359147,50,-,CGGAGATTTAATCTGCAGCTAGGTTTAGCCAAATGTTATCTATTGCGGGG,3' UTR,13,98354242,98359305,5064,1,Foxd1-201,4904,Foxd1-201,Foxd1,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,4,15229,ENSMUSG00000078302,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
3770,cg04287366,0.000000867,0.0000015,0.578079564,0.563630084,gain,ns,-0.00000288,0.00000255,-1.130590804,0.259101304,neg,ns,0.000919451,0.000746781,1.231218833,0.219174277,pos,ns,0.659210416,-0.0000501,0.0000257,-1.950922899,0.051966897,neg,ns,0.032976164,Grin1,Grin1_Exon,2,25311330,25311379,25311378,25311379,50,-,CATGCATATATACCTTGGGTCCGCGCTTGTTGTCATAGGACAGTTGGTCG,"Exon (Grin1-203/Grin1, exon 4 of 20)",2,25291181,25319095,27915,2,Grin1-203,7716,Grin1-203;Grin1-204;Grin1-207;Grin1-208;Grin1-201;Grin1-202;Grin1-206;Grin1-205;Grin1-214;Grin1-211,Grin1;Grin1;Grin1;Grin1;Grin1;Grin1;Grin1;Grin1;Grin1;Grin1,0;0;0;0;0;0;0;0;0;7784,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,7,14810,ENSMUSG00000026959,conserved gene and region,2,25311239,25311379,141,*,141,14,0.659574468,0.937321937,0.09929078,5.96E-11,CpGisland,TRUE,NA,NRS
14566,cg23137310,0.00000261,0.00000204,1.279473524,0.201687144,gain,ns,0.00000392,0.00000347,1.130372525,0.259193088,pos,ns,0.003249046,0.001015678,3.198893015,0.001522263,pos,ns,2.817510236,-0.000171402,0.0000349,-4.907139958,0.0000015,neg,yes,0.951956269,Gm29068,Gm29068_Intron,1,76513744,76513793,76513744,76513745,50,-,CGGTAACCTTTATTTAATTGGCAAGATGGAAATCAATGACACATATGGCA,"Intron (Gm29069-201/Gm29069-201, intron 1 of 1)",1,76110181,76110580,400,2,Gm29068-201,-403213,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3414,cg22033619,0.000113222,0.0000126,8.989377289,2.51E-17,gain,yes,-0.0000242,0.0000214,-1.130263094,0.259239111,neg,ns,0.016208178,0.006268705,2.585570248,0.010178023,pos,ns,1.992336579,-0.000433011,0.00021558,-2.008584918,0.045448097,neg,ns,0.220601629,A830031A19Rik,A830031A19Rik_Intron,11,24063017,24063066,24063017,24063018,50,+,CGGTAGCAGCCTCACAGATAGATCTCTGCCTCGAAGGCACCCACTGGGGC,"Intron (A830031A19Rik-201/A830031A19Rik, intron 1 of 2)",11,24048955,24075054,26100,2,A830031A19Rik-201,11988,A830031A19Rik-201,A830031A19Rik,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,23,268391,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
9112,cg10239446,0.000000383,0.00000395,0.096973815,0.922809853,gain,ns,0.00000758,0.00000671,1.130245509,0.259246507,pos,ns,0.003089298,0.001964953,1.572199377,0.116924362,pos,ns,0.93209499,-0.000143603,0.0000676,-2.125097676,0.034369158,neg,ns,0.925162462,Gm4791,Gm4791_Intergenic_upstream,9,46899935,46899984,46899983,46899984,50,-,CAAACTGCCTGCAGTAATGAGGCTTAATTATAACCATGTTATTAATACCG,Distal Intergenic,9,46998741,47003860,5120,1,Gm4791-201,-98806,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,9,18,215467,ENSMUSG00000094893,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23834,cg22106350,-0.0000184,0.0000161,-1.142317374,0.254203633,loss,ns,0.0000309,0.0000273,1.130137578,0.259291906,pos,ns,0.003550522,0.008012459,0.44312519,0.657984259,pos,ns,0.181784496,0.0000999,0.000275548,0.362656503,0.717108624,pos,ns,0.206454322,En1,En1_Promoter,1,120600022,120600071,120600022,120600023,50,+,CGGGTGCATTTATCATCCCATTACTGTAACAAATCCGGGCTCCACTACAT,Promoter (2-3kb),1,120602418,120607992,5575,1,En1-201,-2347,En1-201,En1,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,23,36,13798,ENSMUSG00000058665,conserved gene and region,1,120599977,120600103,127,*,127,10,0.503937008,1.241446725,0.078740158,0.000000615,CpGisland,TRUE,U13,Hc-P
1514,cg18957921,0.000035,0.0000134,2.613547187,0.009397951,gain,ns,-0.0000257,0.0000227,-1.130065042,0.25932242,neg,ns,-0.003924252,0.006657713,-0.589429455,0.556002537,neg,ns,0.254923227,-0.0000723,0.000228958,-0.315894005,0.752295536,neg,ns,0.811972845,Gm11819,Gm11819_Intergenic_upstream,4,13399231,13399280,13399279,13399280,50,+,ATTGATGGCTTTATCTGATGCAGCCTTGGCAGGGGCCGGGTTTTACAGCG,Distal Intergenic,4,13444770,13445141,372,1,Gm11819-201,-45490,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,19,22,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18159,cg05849927,0.0000344,0.00000427,8.041502254,1.89E-14,gain,yes,0.0000082,0.00000726,1.129823285,0.259424138,pos,ns,0.005627613,0.002126819,2.646023343,0.008559962,pos,ns,2.067528141,0.0000262,0.0000731,0.357743297,0.720778877,pos,ns,0.100203932,Hsd17b12,Hsd17b12_Intron,2,94243855,94243904,94243903,94243904,50,-,TTGCAGTCACGACTTGGGAATCCGTGCTGGTTCCAACCAAAATTACACCG,"Intron (Mir670hg-205/Mir670hg-205, intron 2 of 5)",2,94032689,94157964,125276,2,Hsd17b12-201,-85940,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,14,19,56348,ENSMUSG00000027195,conserved gene but different region,2,94243768,94243904,137,*,137,10,0.525547445,1.064491065,0.072992701,0.00000123,CpGisland,TRUE,U13,Hc-P
22570,cg12441103,0.00000365,0.0000048,0.760011933,0.447825054,gain,ns,-0.00000922,0.00000816,-1.129737685,0.25946016,neg,ns,0.005312224,0.002390528,2.22219692,0.026991488,pos,ns,1.568773166,-0.000251817,0.0000822,-3.063088957,0.002382807,neg,ns,0.89251245,Rpl19-ps10,Rpl19-ps10_Intergenic_downstream,7,115223681,115223730,115223729,115223730,50,-,CTTAGTGTGCATGATCTGGGATTAATGTTTTCTGCAAAATCACATGCTCG,Distal Intergenic,7,115172056,115172385,330,1,Rpl19-ps10-201,51674,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,29,668472,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27964,cg22673296,-0.0000117,0.00000664,-1.763290284,0.078836686,loss,ns,-0.0000127,0.0000113,-1.129713312,0.259470417,neg,ns,-0.004375765,0.003305406,-1.323820675,0.186537959,neg,ns,0.729232779,-0.0000459,0.000113673,-0.403356127,0.686964321,neg,ns,0.922399382,Plxna2,Plxna2_Intergenic_upstream,1,194589952,194590001,194590000,194590001,50,-,CTGCCCCAAGATTGATCTGGTCCATAGGATGCCCCAGATCATTGCATTCG,Distal Intergenic,1,194618218,194620867,2650,1,Plxna2-205,-28266,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,4,18845,ENSMUSG00000026640,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24329,cg10583658,0.0000188,0.00000604,3.118909301,0.001985713,gain,ns,0.0000116,0.0000103,1.129524875,0.25954973,pos,ns,0.00452235,0.003006029,1.504426363,0.133489745,pos,ns,0.874552097,-0.000137766,0.000103377,-1.332657874,0.183622789,neg,ns,0.751234908,Pou3f1,Pou3f1_Intergenic_downstream,4,124663863,124663912,124663911,124663912,50,-,GTATGTGTGATCTTATTTTTTAAACACACACCCCCACACATACATATGCG,Distal Intergenic,4,124656807,124660655,3849,1,Pou3f1-201,7105,Pou3f1-201,Pou3f1,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,11,85,18991,ENSMUSG00000090125,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
26932,cg22627009,-0.0000485,0.00000856,-5.668597852,0.000000033,loss,yes,0.0000164,0.0000145,1.129442095,0.259584578,pos,ns,-0.01271297,0.004259357,-2.98471599,0.00306426,neg,ns,2.513674416,0.000254606,0.000146479,1.738172009,0.083173453,pos,ns,0.71604035,Ttc34,Ttc34_Intergenic_upstream,4,154781398,154781447,154781446,154781447,50,-,TTTTGATAATTAAACAAAGCTGATCAAGAGAGGCAAGCAGCACGGCTCCG,Distal Intergenic,4,154837459,154867125,29667,1,Ttc34-203,-56061,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,6,242800,ENSMUSG00000046637,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20135,cg00700237,0.0000418,0.0000122,3.419970584,0.000710146,gain,ns,0.0000235,0.0000208,1.129413218,0.259596735,pos,ns,0.012547687,0.006089652,2.060493187,0.040185541,pos,ns,1.395930178,-0.000362842,0.000209423,-1.732583078,0.084164354,neg,ns,0.29368518,Calcoco1,Calcoco1_Intergenic_downstream,15,102694605,102694654,102694653,102694654,50,+,CAAGGAGTCATTAGCATTTTCATGATGGTGTATTTCTGCTTGTCTCCGCG,Distal Intergenic,15,102706972,102709902,2931,2,Calcoco1-203,15248,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,29,67488,ENSMUSG00000023055,conserved gene and region,15,102694651,102694811,161,*,161,11,0.639751553,0.678544061,0.068322981,0.000000568,CpGisland,TRUE,U13,Hc-P
9928,cg10005379,0.000000133,0.0000014,0.094918087,0.924441214,gain,ns,-0.00000269,0.00000238,-1.129354354,0.259621517,neg,ns,-0.0000966,0.000696822,-0.138592656,0.889862033,neg,ns,0.050677323,-0.0000443,0.000024,-1.84879515,0.065439428,neg,ns,0.964897406,Coch,Coch_Exon,12,51603337,51603386,51603385,51603386,50,+,ATTGCCTTTCTAATTGATGGCTCCAGCAGTGTTGGAGATAGCAATTTCCG,"Exon (Coch-202/Coch, exon 10 of 11)",12,51593341,51605771,12431,1,Coch-202,9996,Coch-202;Coch-201,Coch;Coch,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,12810,ENSMUSG00000020953,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1528,cg24545857,0.000000756,0.00000215,0.351039364,0.725797263,gain,ns,0.00000413,0.00000366,1.129214779,0.259680286,pos,ns,0.000991275,0.001071658,0.924991755,0.355689675,pos,ns,0.448928741,-0.0000581,0.0000369,-1.576644118,0.115897334,neg,ns,0.936754249,Gm11819,Gm11819_Intergenic_downstream,4,13451891,13451940,13451939,13451940,50,+,GATTTTTCTTTATCCTCATTAAAGATCCCAGGTGCAGACAAAGCTTTACG,Distal Intergenic,4,13444770,13445141,372,1,Gm11819-201,7121,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,22,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4385,cg24676367,-0.000000788,0.00000306,-0.257933793,0.79662915,loss,ns,0.00000586,0.00000519,1.129159482,0.259703572,pos,ns,0.002881078,0.00152052,1.894797396,0.059049606,pos,ns,1.228782998,-0.000118237,0.0000523,-2.261161269,0.024442127,neg,ns,0.925931858,Tnik,Tnik_threeUTR,3,28667965,28668014,28668013,28668014,50,+,TCCATGATGAACTGGTAACAGAAGAGCACTTGGCACTTATCTTCATGGCG,3' UTR,3,28263214,28670585,407372,1,Tnik-207,404751,Tnik-207;Tnik-201;Tnik-212;Tnik-203;Tnik-205;Tnik-202;Tnik-206;Tnik-211;Tnik-214;Tnik-215;Tnik-204;Tnik-216,Tnik;Tnik;Tnik;Tnik;Tnik;Tnik;Tnik;Tnik;Tnik;Tnik;Tnik;Tnik,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,8,15,665113,ENSMUSG00000027692,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15338,cg20527766,-0.00000264,0.00000114,-2.31021404,0.021532747,loss,ns,0.0000022,0.00000194,1.12905075,0.259749364,pos,ns,0.001658987,0.000569705,2.912013686,0.003851646,pos,ns,2.414353667,-0.0000598,0.0000196,-3.053074945,0.002461341,neg,ns,0.965936761,Zfp207,Zfp207_Exon,11,80391855,80391904,80391855,80391856,50,-,CGTCCTGGAATTCCTCCAATGACTCAAGCACAGGCTGTTTCAGCGCCAGG,"Exon (Zfp207-206/Zfp207, exon 7 of 11)",11,80383279,80396245,12967,1,Zfp207-206,8576,Zfp207-206;Zfp207-207;Zfp207-208;Zfp207-201;Zfp207-203;Zfp207-202;Zfp207-205;Zfp207-204,Zfp207;Zfp207;Zfp207;Zfp207;Zfp207;Zfp207;Zfp207;Zfp207,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,22680,ENSMUSG00000017421,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20106,cg19729220,0.00000951,0.00000372,2.55507802,0.011093751,gain,ns,-0.00000714,0.00000632,-1.129036193,0.259755495,neg,ns,0.002058755,0.001852292,1.111463304,0.267230238,pos,ns,0.573114401,-0.000064,0.0000637,-1.004675458,0.315836706,neg,ns,0.896335283,Atf7,Atf7_Intron,15,102594075,102594124,102594075,102594076,50,-,CGATGCGGAAGCCATATTTCTGAACGAGAGAAGACCAAAATTTGTCATTT,"Intron (Gm28047-201/Gm28047, intron 1 of 12)",15,102525946,102625073,99128,2,Atf7-211,30949,Atf7-211;Atf7-210;Atf7-209;Atf7-202;Atf7-203;Atf7-205;Atf7-204;Atf7-206;Atf7-208;Atf7-213;Atf7-212;Atf7-207;Gm28047-201,Atf7;Atf7;Atf7;Atf7;Atf7;Atf7;Atf7;Atf7;Atf7;Atf7;Atf7;Atf7;Gm28047,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,11,223922,ENSMUSG00000099083,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18618,cg18906733,0.0000976,0.0000121,8.05815066,1.69E-14,gain,yes,-0.0000232,0.0000206,-1.128963487,0.259786118,neg,ns,0.010201817,0.00602665,1.692783965,0.091501263,pos,ns,1.03857291,-0.000169162,0.000207256,-0.816197892,0.415013687,neg,ns,0.496111831,Hoxb3,Hoxb3_Intron,11,96334512,96334561,96334560,96334561,50,-,GGAAATTGTTTTGCATTAAATTTTCTCAGCCGCAGAATTATCTTTCCTCG,"Intron (Hoxb3-202/Hoxb3, intron 1 of 3)",11,96323326,96347930,24605,1,Hoxb3-202,11186,Hoxb3-202;Hoxb3-203,Hoxb3;Hoxb3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,19,15410,ENSMUSG00000048763,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
11352,cg22622940,-0.00000148,0.000000718,-2.056802051,0.040541795,loss,ns,-0.00000138,0.00000122,-1.128897354,0.259813975,neg,ns,0.000939317,0.000357584,2.626839671,0.009046455,pos,ns,2.043521563,-0.000036,0.0000123,-2.92556281,0.003692185,neg,ns,0.989747584,Clk3,Clk3_Exon,9,57758605,57758654,57758653,57758654,50,+,GTTTTACGAAAGGTGGCTGTACATCGCTCTTGGAGCCAATCGCCGATCCG,"Exon (Clk3-207/Clk3, exon 3 of 12)",9,57750624,57765103,14480,2,Clk3-207,6449,Clk3-207;Clk3-201;Clk3-205;Clk3-203;Clk3-206;Clk3-209;Clk3-208;Clk3-204,Clk3;Clk3;Clk3;Clk3;Clk3;Clk3;Clk3;Clk3,0;0;0;0;-3284;0;5654;6199,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,14,102414,ENSMUSG00000032316,conserved gene and region,9,57758611,57758779,169,*,169,14,0.615384615,0.908602151,0.082840237,7.36E-10,CpGisland,TRUE,U12,Tr-I
11036,cg02147293,-0.0000162,0.00000574,-2.825017343,0.005034367,loss,ns,0.000011,0.00000975,1.12874038,0.259880105,pos,ns,0.001747904,0.002854975,0.61223098,0.540833741,pos,ns,0.266936222,-0.000135079,0.0000982,-1.375792308,0.169879118,neg,ns,0.58744945,Gm13518,Gm13518_Intergenic_downstream,2,56362742,56362791,56362790,56362791,50,+,AGTGCTGGGTGACCTGATGTCACTTGCATTGTTGCTCTACCCTTTGAACG,Distal Intergenic,2,56039853,56040085,233,1,Gm13518-201,322889,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,37,37,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12998,cg12559929,-0.0000107,0.00000204,-5.258590241,0.000000271,loss,yes,0.00000392,0.00000347,1.128710963,0.259892499,pos,ns,-0.001064129,0.001016971,-1.046371201,0.296204862,neg,ns,0.528407818,0.0000158,0.000035,0.450461844,0.652692338,pos,ns,0.949305204,Per1,Per1_Exon,11,69104746,69104795,69104746,69104747,50,+,CGTCACCAGTCAGTGTAGCTTCAGCTCCACCATCGTCCATGTGGGAGACA,"Exon (Per1-202/Per1, exon 17 of 18)",11,69095217,69106458,11242,1,Per1-202,9529,Per1-202;Per1-201;Per1-204;Per1-206;Per1-205;Per1-203,Per1;Per1;Per1;Per1;Per1;Per1,0;0;4594;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,18626,ENSMUSG00000020893,conserved gene and region,11,69104619,69104844,226,*,226,14,0.637168142,0.622344611,0.061946903,0.000000033,CpGisland,TRUE,U10,Tr-S
23394,cg00032872,0.0000202,0.00000408,4.956395535,0.00000118,gain,yes,-0.00000783,0.00000694,-1.128692042,0.259900471,neg,ns,0.005571062,0.002032897,2.740454884,0.006491171,pos,ns,2.187676963,-0.000133217,0.0000699,-1.905523708,0.057636978,neg,ns,0.049929882,Sox21,Sox21_Intergenic_downstream,14,118232172,118232221,118232172,118232173,50,+,CGAAGCCTTGAAAGGATTTAATTAACCGTGTCAGGGATAATTACCCCTGG,Downstream (1-2kb),14,118233232,118237030,3799,2,Sox21-201,4809,Sox21-201,Sox21,4809,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,26,27,223227,ENSMUSG00000061517,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
17288,cg15885222,-0.0000022,0.00000496,-0.444441342,0.657033642,loss,ns,0.00000951,0.00000842,1.128688132,0.259902119,pos,ns,0.001009879,0.002467853,0.40921365,0.68266546,pos,ns,0.16579207,-0.00000252,0.0000849,-0.029738675,0.976294604,neg,ns,0.869946274,Ankfn1,Ankfn1_Exon,11,89421243,89421292,89421291,89421292,50,+,AACACCTCCTGTGTGTAGAGGCGGAAGTTCCTTGCCTGCAGAGGGACACG,"Exon (Ankfn1-208/Ankfn1, exon 19 of 22)",11,89391238,89841266,450029,2,Ankfn1-208,419974,Ankfn1-201;Ankfn1-207;Ankfn1-208;Ankfn1-206;Ankfn1-202;Ankfn1-203,Ankfn1;Ankfn1;Ankfn1;Ankfn1;Ankfn1;Ankfn1,-2295;-2295;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,15,382543,ENSMUSG00000047773,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9432,cg01511856,-0.0000601,0.00000691,-8.703687834,1.94E-16,loss,yes,0.0000132,0.0000117,1.128658246,0.259914711,pos,ns,-0.009060536,0.003438511,-2.635017516,0.008836112,neg,ns,2.053738787,0.000247688,0.00011825,2.094610197,0.037017168,pos,ns,0.725910038,Zbtb16,Zbtb16_Intron,9,48736623,48736672,48736671,48736672,50,-,GAATACAAAATCAGCCCATTACAGTACAGGGAGACTGCTACTTAGCAACG,"Intron (Zbtb16-201/Zbtb16, intron 3 of 6)",9,48654297,48835945,181649,2,Zbtb16-201,99273,Zbtb16-201;Zbtb16-202,Zbtb16;Zbtb16,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,37,235320,ENSMUSG00000066687,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
10868,cg26312920,-0.0000112,0.00000769,-1.455859978,0.146443302,loss,ns,-0.0000147,0.0000131,-1.128520453,0.259972776,neg,ns,0.003583051,0.003827782,0.936064615,0.349968547,pos,ns,0.455970986,-0.000491196,0.000131637,-3.731440737,0.000226409,neg,ns,0.645137227,Neurod6,Neurod6_fiveUTR,6,55681099,55681148,55681147,55681148,50,+,ACATTGATGCCAACTGCCAGAGCTGGTACCCATGCCATCTGCTAGTGACG,Promoter (<=1kb),6,55677822,55681263,3442,2,Neurod6-201,115,Neurod6-201,Neurod6,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,16,11922,ENSMUSG00000037984,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18358,cg10033691,-0.0000298,0.00000587,-5.077843251,0.00000066,loss,yes,-0.0000113,0.00000997,-1.1284636,0.259996735,neg,ns,-0.003827207,0.002921552,-1.30999108,0.19116874,neg,ns,0.718583123,-0.0000189,0.000100472,-0.188090609,0.850928684,neg,ns,0.867736594,Pogz,Pogz_Exon,3,94870073,94870122,94870121,94870122,50,+,CTTTCAGTGACCTCTTCCATCCCAGTATTTGACCTCCAGGATGGTGGACG,"Exon (Pogz-205/Pogz, exon 8 of 19)",3,94837567,94882326,44760,1,Pogz-205,32506,Pogz-205;Pogz-207;Pogz-203;Pogz-201;Pogz-204;Pogz-209;Pogz-206,Pogz;Pogz;Pogz;Pogz;Pogz;Pogz;Pogz,0;0;0;0;0;0;-1190,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,7,229584,ENSMUSG00000038902,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6483,cg27381861,-0.0000131,0.00000447,-2.920554485,0.003750412,loss,ns,0.00000857,0.00000759,1.128407013,0.260020585,pos,ns,0.004655626,0.002224506,2.092880726,0.037172477,pos,ns,1.429778494,-0.00022648,0.0000765,-2.960499159,0.003308447,neg,ns,0.915299292,Zfp536,Zfp536_Intron,7,37450422,37450471,37450470,37450471,50,-,AATTTTTGACAGGACAATGGTGCTTATTGTACTTTATGAGTCCACTGGCG,"Intron (Zfp536-211/Zfp536, intron 3 of 3)",7,37318024,37568390,250367,2,Zfp536-211,117919,Zfp536-211,Zfp536,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,73,112,243937,ENSMUSG00000043456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18315,cg15219830,0.0000151,0.00000231,6.535183453,2.61E-10,gain,yes,0.00000444,0.00000393,1.128298909,0.260066151,pos,ns,0.00328802,0.001151774,2.854743287,0.004597474,pos,ns,2.337480688,-0.0000348,0.0000396,-0.878410112,0.380401518,neg,ns,0.068140349,Gm48316,Gm48316_Intergenic_upstream,13,94710095,94710144,94710095,94710096,50,+,CGAGGGGTCCCTGGCTGGAGCCTGCACGTTTCTCTTTGCATTAGCAAAGC,Distal Intergenic,13,94752270,94752593,324,1,Gm48316-201,-42126,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,36,42,,NA,mapped to different genes,13,94709736,94710122,387,*,387,24,0.661498708,0.602217467,0.062015504,1.12E-13,CpGisland,TRUE,U3,Pr-B
18307,cg06700387,0.0000954,0.00000937,10.178346,3.50E-21,gain,yes,-0.000018,0.0000159,-1.128275754,0.260075911,neg,ns,0.012922563,0.004663082,2.771249211,0.005921507,pos,ns,2.227567763,-0.00016091,0.000160363,-1.00340925,0.316446017,neg,ns,0.154735555,Gm48316,Gm48316_Intergenic_upstream,13,94707048,94707097,94707096,94707097,50,+,ATGGGGCTAATCTGGCGCAGAACTGGCGGCTTCGCAGAGGCTACAGGTCG,Distal Intergenic,13,94752270,94752593,324,1,Gm48316-201,-45173,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,36,42,,NA,mapped to different genes,13,94707063,94707220,158,*,158,11,0.5,1.114102564,0.069620253,0.000000471,CpGisland,TRUE,U13,Hc-P
26226,cg11230269,0.0000068,0.0000032,2.122767116,0.034565676,gain,ns,-0.00000614,0.00000544,-1.128275685,0.26007594,neg,ns,0.001050979,0.001595037,0.658905645,0.510445472,pos,ns,0.292050645,-0.0000323,0.0000549,-0.58805913,0.556920753,neg,ns,0.935377768,Trrap,Trrap_Exon,5,144816379,144816428,144816379,144816380,50,+,CGCTGCTGGTGGAGCACGCCCCCCACCACATCCATGACAACAACAAGAAC,"Exon (Trrap-203/Trrap, exon 38 of 71)",5,144768794,144859778,90985,1,Trrap-203,47585,Trrap-203;Trrap-201;Trrap-202;Trrap-215;Trrap-207;Trrap-206;Trrap-213;Trrap-210,Trrap;Trrap;Trrap;Trrap;Trrap;Trrap;Trrap;Trrap,0;0;0;0;0;0;4348;-3370,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,100683,ENSMUSG00000045482,conserved gene and region,5,144816354,144816464,111,*,111,9,0.612612613,0.929302326,0.081081081,0.00000221,CpGisland,TRUE,U10,Tr-S
18864,cg16316961,0.00000597,0.00000234,2.553312652,0.011148953,gain,ns,-0.00000448,0.00000397,-1.128240525,0.260090762,neg,ns,-0.000875828,0.00116391,-0.752487542,0.452328921,neg,ns,0.344545644,-0.0000131,0.00004,-0.326118846,0.744554479,neg,ns,0.04585732,E130114P18Rik,E130114P18Rik_Intron,4,97775302,97775351,97775302,97775303,50,+,CGAAGGGCGCCAAAAGTTACTTAAGATAATATTGCTAACCGCAGAAAGCT,"Intron (Nfia-208/Nfia, intron 1 of 3)",4,97568133,97778048,209916,2,E130114P18Rik-204,2697,E130114P18Rik-204;E130114P18Rik-205;Nfia-208;Nfia-202;Nfia-203;Nfia-205;Nfia-201;Nfia-204,E130114P18Rik;E130114P18Rik;Nfia;Nfia;Nfia;Nfia;Nfia;Nfia,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,24,319865,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
22582,cg15227756,0.00000331,0.00000635,0.521751575,0.602215883,gain,ns,0.0000122,0.0000108,1.127759001,0.260293805,pos,ns,0.012977181,0.003158345,4.108855191,0.0000509,pos,ns,4.292902469,-0.000399411,0.000108615,-3.677303343,0.000277766,neg,ns,0.864752957,Wwox,Wwox_Intron,8,115296225,115296274,115296225,115296226,50,-,CGCTTTAACAAGAGAATATAAAAGTTAAAAAGGTCACTGTAGTAATAGAC,"Intron (Wwox-201/Wwox, intron 8 of 8)",8,114439655,115352708,913054,1,Wwox-201,856570,Wwox-201;Wwox-209,Wwox;Wwox,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,32,32,80707,ENSMUSG00000004637,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15853,cg25375926,0.0000455,0.0000144,3.160363737,0.001731345,gain,ns,0.0000276,0.0000245,1.127704438,0.26031682,pos,ns,0.007933726,0.007167458,1.106909265,0.269191341,pos,ns,0.569938914,0.00001,0.000246488,0.040603206,0.967638365,pos,ns,0.69759504,Mef2c,Mef2c_threeUTR,13,83662574,83662623,83662574,83662575,50,+,CGAAAGGGAAAGTCCCTCAGTCAAGCGCATGCGACTTTCTGAAGGATGGG,3' UTR,13,83504034,83663343,159310,1,Mef2c-218,158540,Mef2c-218;Mef2c-228;Mef2c-201;Mef2c-202;Mef2c-222;Mef2c-223;Mef2c-227;Mef2c-213;Mef2c-214;Mef2c-212;Mef2c-203;Mef2c-219;Mef2c-225;Mef2c-230;Mef2c-211,Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,10,41,17260,ENSMUSG00000005583,mapped to different genes,13,83662502,83662606,105,*,105,10,0.590476191,1.097178683,0.095238095,0.000000101,CpGisland,TRUE,NA,NRS
19787,cg21695479,-0.00000163,0.00000408,-0.39813498,0.69080474,loss,ns,0.00000783,0.00000694,1.127667108,0.260332567,pos,ns,0.004819551,0.002033045,2.37060664,0.018370351,pos,ns,1.735882538,-0.000152913,0.0000699,-2.187089741,0.029482907,neg,ns,0.887549245,Cycs-ps2,Cycs-ps2_Intergenic_upstream,5,101090620,101090669,101090620,101090621,50,-,CGACAGCTTCTATTAAGGCCTATCCAGGGCAGCTGGATTGAACAGATACA,Distal Intergenic,5,101305578,101305869,292,1,Cycs-ps2-201,-214958,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,10,13065,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15595,cg05158744,0.000145837,0.0000121,12.03086829,1.29E-27,gain,yes,-0.0000232,0.0000206,-1.127635279,0.260345993,neg,ns,0.022055384,0.006033215,3.655659901,0.000301218,pos,ns,3.521119087,-0.000589951,0.000207482,-2.843385018,0.004760166,neg,ns,0.128345328,Zfp804a,Zfp804a_fiveUTR,2,82053787,82053836,82053835,82053836,50,-,CCCCATGGAGTGTTACTACATTGTCATCAGCTCCACGCATCTCAGCAACG,Promoter (<=1kb),2,82053222,82259879,206658,1,Zfp804a-201,565,Zfp804a-201,Zfp804a,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,9,241514,ENSMUSG00000070866,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
2390,cg05731702,0.0000303,0.0000199,1.526446004,0.127918426,gain,ns,-0.000038,0.0000337,-1.127584023,0.260367615,neg,ns,-0.016249426,0.009882935,-1.644190211,0.101150607,neg,ns,0.995031505,0.000217858,0.000339873,0.640997648,0.521997791,pos,ns,0.525120226,Tfap2b,Tfap2b_Intron,1,19231913,19231962,19231961,19231962,50,-,TTTGTCCAGATGTTTTTGAGACGTGATTGGAATTTGATTGCCCCTTTCCG,"Intron (Tfap2b-201/Tfap2b, intron 6 of 6)",1,19208914,19238576,29663,1,Tfap2b-201,22999,Tfap2b-201;Tfap2b-204;Tfap2b-202,Tfap2b;Tfap2b;Tfap2b,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,40,21419,ENSMUSG00000025927,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2770,cg01047058,0.0000999,0.0000082,12.19208636,3.39E-28,gain,yes,-0.0000157,0.0000139,-1.127529589,0.26039058,neg,ns,0.009094117,0.004078941,2.229528982,0.026494856,pos,ns,1.576838431,-0.000107199,0.000140274,-0.764207118,0.445325107,neg,ns,0.235173783,Prdm13,Prdm13_Promoter,4,21688074,21688123,21688074,21688075,50,+,CGCCAGAGGCATTCACACCAGCTCGCCGAGTTTTATTCTGTCCTGTGGCT,Promoter (2-3kb),4,21677481,21685963,8483,2,Prdm13-202,-2111,Prdm13-205;Prdm13-201;Prdm13-202;Prdm13-203;Prdm13-206;Prdm13-204,Prdm13;Prdm13;Prdm13;Prdm13;Prdm13;Prdm13,0;0;0;0;0;-2229,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,19,23,230025,ENSMUSG00000040478,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11130,cg16670181,0.0000734,0.00000964,7.612127894,3.27E-13,gain,yes,-0.0000185,0.0000164,-1.127503764,0.260401476,neg,ns,0.009130156,0.004796971,1.903316693,0.057925307,pos,ns,1.237131659,-0.000234706,0.000164967,-1.422738397,0.155817497,neg,ns,0.085160666,Pax9,Pax9_Exon,12,56696572,56696621,56696620,56696621,50,+,AGAGCCAGCCTTCGGGGAGGTGAACCAGCTGGGAGGAGTGTTCGTGAACG,"Exon (Pax9-203/Pax9, exon 3 of 5)",12,56691767,56712707,20941,1,Pax9-203,4805,Pax9-203;Pax9-201;Pax9-202,Pax9;Pax9;Pax9,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,7,18511,ENSMUSG00000001497,conserved gene but different region,12,56696495,56697028,534,*,534,46,0.625468165,0.881061693,0.086142322,4.52E-32,CpGisland,TRUE,NA,NRS
1735,cg00320782,-0.0000272,0.0000134,-2.025507251,0.043671768,loss,ns,0.0000257,0.0000228,1.127472445,0.260414689,pos,ns,0.00785031,0.00667614,1.175875492,0.240546876,pos,ns,0.618800278,-0.000283416,0.000229592,-1.23443461,0.21797592,neg,ns,0.169391279,Gm5513,Gm5513_Intergenic_downstream,19,14891115,14891164,14891163,14891164,50,-,ACCTCATTGAGATATAATTGCAGCTATAAATACAAGCGAAAAGCTTACCG,Distal Intergenic,19,14959549,14960766,1218,2,Gm5513-201,69651,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,22,433225,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
11277,cg22524187,0.00000271,0.00000244,1.112800768,0.266656167,gain,ns,-0.00000467,0.00000414,-1.127160161,0.260546471,neg,ns,0.0000946,0.001212993,0.077958501,0.937911358,pos,ns,0.027838205,-0.000000753,0.0000417,-0.018048168,0.985612038,neg,ns,0.939027313,Gpd2,Gpd2_Intron,2,57312357,57312406,57312405,57312406,50,-,GAGCAAAGCCAATTTAATCTCTGGCTCCCCTGAGGTAAATGTAGTTCACG,"Intron (Gpd2-204/Gpd2, intron 6 of 11)",2,57237635,57367853,130219,1,Gpd2-204,74722,Gpd2-204;Gpd2-207;Gpd2-202;Gpd2-201,Gpd2;Gpd2;Gpd2;Gpd2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,3,14571,ENSMUSG00000026827,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24537,cg15167520,0.00000138,0.00000167,0.823564038,0.410820443,gain,ns,0.0000032,0.00000284,1.127081836,0.260579531,pos,ns,0.002107417,0.000831903,2.533247646,0.011793817,pos,ns,1.928345601,-0.0000333,0.0000286,-1.163379581,0.245570217,neg,ns,0.965122466,AU040320,AU040320_Exon,4,126864141,126864190,126864189,126864190,50,-,GATTTGGCTTTGGCAAGTTCTTCATGTACCTCCCTCACCATGAGAATACG,"Exon (Zmym4-204/Zmym4, exon 24 of 24)",4,126753555,126870070,116516,1,AU040320-203,110586,AU040320-203;AU040320-202;Zmym4-204;Zmym4-201;Zmym4-205,AU040320;AU040320;Zmym4;Zmym4;Zmym4,0;0;0;0;6283,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,100317,ENSMUSG00000028830,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17459,cg16420308,-0.00000473,0.00000405,-1.168477612,0.243511958,loss,ns,-0.00000775,0.00000688,-1.127057009,0.260590011,neg,ns,-0.001784004,0.002015405,-0.885184105,0.376743418,neg,ns,0.423954326,-0.000161512,0.0000693,-2.330293371,0.020432127,neg,ns,0.924363257,Nrxn3,Nrxn3_threeUTR,12,90331940,90331989,90331988,90331989,50,+,TCCTCGTCTGGGATGGTGCCCAAATTGCCAGCTGGCAAAATGAATAACCG,3' UTR,12,88722986,90332878,1609893,1,Nrxn3-213,1608954,Nrxn3-213;Nrxn3-208;Nrxn3-205;Nrxn3-201;Nrxn3-210;Nrxn3-214;Nrxn3-203;Nrxn3-202,Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,14,39,18191,ENSMUSG00000066392,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25787,cg06350884,0.0000144,0.00000295,4.869071828,0.00000179,gain,yes,-0.00000565,0.00000501,-1.127051199,0.260592463,neg,ns,0.001302718,0.001468283,0.887238622,0.37563826,pos,ns,0.42523018,-0.0000675,0.0000505,-1.33742356,0.182064851,neg,ns,0.097425796,Uncx,Uncx_Exon,5,139544053,139544102,139544053,139544054,50,-,CGTGGTGGGCTTCCCCTACCCGCTGGGCCACCACCACGTGTACGAGCTGG,Promoter (<=1kb),5,139543494,139548179,4686,1,Uncx-201,559,Uncx-201;Uncx-202,Uncx;Uncx,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,88,22255,ENSMUSG00000029546,conserved gene and region,5,139543584,139544742,1159,*,1159,116,0.671268335,0.890168971,0.100086281,7.68E-88,CpGisland,TRUE,U13,Hc-P
27084,cg15279950,0.00015738,0.00000999,15.75317184,1.75E-41,gain,yes,-0.0000191,0.000017,-1.127028958,0.260601852,neg,ns,0.00534674,0.004972323,1.075300306,0.283076489,pos,ns,0.5480962,0.000445293,0.000170998,2.604087883,0.00965549,pos,ns,0.299037379,Vstm2l,Vstm2l_Promoter,2,157914508,157914557,157914556,157914557,50,-,TCCCAGCCTGGGCAAAACTTTGATGATAAATCAAGCGGCAGATCCCTCCG,Promoter (<=1kb),2,157914653,157944719,30067,1,Vstm2l-201,-145,Vstm2l-201,Vstm2l,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,5,277432,ENSMUSG00000037843,conserved gene and region,2,157914546,157915248,703,*,703,86,0.73541963,0.905330937,0.122332859,1.18E-73,CpGisland,TRUE,U13,Hc-P
15210,cg19697851,-0.000026,0.0000106,-2.462262218,0.014350132,loss,ns,0.0000202,0.0000179,1.12693772,0.260640368,pos,ns,0.007902997,0.005253254,1.504400382,0.133496428,pos,ns,0.874530355,-0.000377877,0.000180659,-2.091661154,0.037282332,neg,ns,0.729131955,Itprid2,Itprid2_Exon,2,79670760,79670809,79670760,79670761,50,-,CGGGAAATTGTAAGTGGACTTTTGGCAGCAGTATCTTCAAGTAAAGCGTC,"Exon (Itprid2-202/Itprid2, exon 17 of 18)",2,79635352,79672966,37615,1,Itprid2-202,35408,Itprid2-202;Itprid2-203;Itprid2-201;Itprid2-205,Itprid2;Itprid2;Itprid2;Itprid2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,70599,ENSMUSG00000027007,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25563,cg09862138,0.0000604,0.00000671,8.999872933,2.33E-17,gain,yes,0.0000128,0.0000114,1.126925469,0.26064554,pos,ns,-0.00331486,0.003338598,-0.992889867,0.321537988,neg,ns,0.492767711,-0.0000232,0.000114814,-0.202264227,0.839842839,neg,ns,0.853503206,Ebf3,Ebf3_Exon,7,137231215,137231264,137231263,137231264,50,-,CCCGCCTCCCGTGTTTGGAATTGTTGTGCACAAACATGTTGTCTGACACG,"Exon (Ebf3-204/Ebf3, exon 8 of 16)",7,137193673,137314445,120773,2,Ebf3-204,83181,Ebf3-204;Ebf3-201;Ebf3-202;Ebf3-203;Ebf3-208;Ebf3-205;Ebf3-207,Ebf3;Ebf3;Ebf3;Ebf3;Ebf3;Ebf3;Ebf3,0;0;0;0;0;0;-4413,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,84,13593,ENSMUSG00000010476,conserved gene and region,7,137231186,137231371,186,*,186,15,0.569892473,1.010869565,0.080645161,2.30E-10,CpGisland,TRUE,U11,Tr-P
17603,cg22515205,-0.0000167,0.00000537,-3.115633556,0.002007216,loss,ns,0.0000103,0.00000913,1.12688606,0.260662178,pos,ns,0.000999488,0.002673845,0.373801768,0.708807323,pos,ns,0.149471804,-0.00012776,0.000092,-1.389402084,0.165707637,neg,ns,0.889524768,Aktip,Aktip_Intron,8,91185721,91185770,91185769,91185770,50,+,AATATTGCTTTAGCAGGATTAATGATCAAAACCCCAACCTGTTTGTCACG,"Intron (Aktip-209/Aktip, intron 1 of 7)",8,91125916,91199976,74061,2,Aktip-209,14206,Aktip-209;Aktip-207;Aktip-212,Aktip;Aktip;Aktip,0;0;14194,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,6,14339,ENSMUSG00000031667,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26146,cg09531328,-0.00000148,0.00000117,-1.265356364,0.206693862,loss,ns,0.00000225,0.00000199,1.12672826,0.260728807,pos,ns,0.001291517,0.000584099,2.211127256,0.027756579,pos,ns,1.556634062,-0.0000478,0.0000201,-2.381850235,0.017828968,neg,ns,0.966506839,Lmo4,Lmo4_Intron,3,144195992,144196041,144195992,144195993,50,+,CGCCACTTTATTGAAAATAGCCTGTAAGTTGTTATTAAATGTATTGACTG,"Intron (Lmo4-203/Lmo4, intron 2 of 4)",3,144188530,144202396,13867,2,Lmo4-203,6355,Lmo4-203;Lmo4-201;Lmo4-202;Lmo4-207;Lmo4-206;Lmo4-208;Lmo4-205,Lmo4;Lmo4;Lmo4;Lmo4;Lmo4;Lmo4;Lmo4,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,54,16911,ENSMUSG00000028266,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19835,cg02294059,-0.00000584,0.00000399,-1.461991941,0.144756386,loss,ns,0.00000764,0.00000678,1.126590133,0.260787139,pos,ns,-0.005919647,0.001987484,-2.978463096,0.003125676,neg,ns,2.505055986,0.0000508,0.0000683,0.742845991,0.458137468,pos,ns,0.842298518,Med12,Med12_Exon,X,101291287,101291336,101291335,101291336,50,+,GCCACAGGGCTCCCTTATCGATACCAAGGGCAACAAGATTGCTGGCTTCG,"Exon (Med12-204/Med12, exon 36 of 46)",20,101274030,101297465,23436,1,Med12-204,17257,Med12-204;Med12-203;Med12-201;Med12-202;Med12-208;Med12-205,Med12;Med12;Med12;Med12;Med12;Med12,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,15,15,59024,ENSMUSG00000079487,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19306,cg05194315,0.0000848,0.00000798,10.62308382,1.10E-22,gain,yes,-0.0000153,0.0000136,-1.126521056,0.260816314,neg,ns,0.009407443,0.003971599,2.36867876,0.018464618,pos,ns,1.733659678,-0.000103407,0.000136583,-0.757097487,0.449566506,neg,ns,0.165188819,Foxl2,Foxl2_Exon,9,98955947,98955996,98955995,98955996,50,-,ATAGCATCCGCCACAACCTCAGCCTCAACGAGTGCTTCATCAAGGTGCCG,Promoter (<=1kb),9,98955288,98958543,3256,1,Foxl2-201,659,Foxl2-201,Foxl2,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,26927,ENSMUSG00000050397,conserved gene and region,9,98954973,98957445,2473,*,2473,258,0.694298423,0.867528166,0.104326729,1.88E-199,CpGisland,TRUE,U3,Pr-B
8738,cg07150184,-0.0000088,0.00000219,-4.023854223,0.000072,loss,ns,0.00000419,0.00000372,1.126455079,0.260844182,pos,ns,-0.002026931,0.001089026,-1.861233275,0.063657662,neg,ns,1.196149314,0.0000492,0.0000375,1.31428437,0.18972214,pos,ns,0.951929572,Tmem63b,Tmem63b_Exon,17,45661871,45661920,45661871,45661872,50,-,CGTAGTAGAGATTGTACCTGTCTACCAGGTGCTTCAGCAGCATGTACATG,"Exon (Tmem63b-201/Tmem63b, exon 21 of 24)",17,45660171,45686259,26089,2,Tmem63b-201,24339,Capn11-201;Capn11-202;Tmem63b-201;Tmem63b-208;Tmem63b-203,Capn11;Capn11;Tmem63b;Tmem63b;Tmem63b,-2546;-2574;0;0;4534,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,12,224807,ENSMUSG00000036026,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16782,cg10456584,-0.00000417,0.0000017,-2.450719386,0.014809304,loss,ns,0.00000325,0.00000289,1.126166359,0.260966158,pos,ns,0.001115226,0.000846166,1.317975592,0.188484897,pos,ns,0.724723444,-0.00002,0.0000291,-0.687277823,0.492421513,neg,ns,0.075004156,Pcbp1,Pcbp1_Exon,6,86525412,86525461,86525460,86525461,50,-,CTCCAGCATGACCAGGCAAATCTGCTTGACACACTCGGTGACAGACTGCG,Promoter (<=1kb),6,86524492,86526321,1830,2,Pcbp1-201,860,Pcbp1-201,Pcbp1,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,14,15,23983,ENSMUSG00000051695,mapped to different genes,6,86525220,86525644,425,*,425,38,0.665882353,0.811965812,0.089411765,3.12E-27,CpGisland,TRUE,U1,Pr-A
4436,cg24682303,-0.0000194,0.00000502,-3.861113258,0.000137402,loss,ns,-0.0000096,0.00000853,-1.12613881,0.260977799,neg,ns,-0.005712653,0.002497936,-2.28694951,0.022872516,neg,ns,1.640686059,0.00000659,0.0000859,0.076762401,0.93886208,pos,ns,0.763400362,Actn4,Actn4_Exon,7,28911504,28911553,28911552,28911553,50,-,AAAAGGCATGGTAGAAGCTGGACACATAGGTCATTATGGCCTTCTCGTCG,"Exon (Actn4-201/Actn4, exon 8 of 21)",7,28893248,28962340,69093,2,Actn4-201,50787,Actn4-201;Actn4-206;Actn4-211;Actn4-202;Actn4-208;Actn4-204;Actn4-207,Actn4;Actn4;Actn4;Actn4;Actn4;Actn4;Actn4,0;0;0;0;-3818;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,9,60595,ENSMUSG00000054808,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24451,cg16983701,-0.00000676,0.00000323,-2.089928417,0.037438888,loss,ns,0.00000619,0.0000055,1.126046756,0.261016698,pos,ns,0.002586489,0.001610049,1.606465967,0.109189648,pos,ns,0.961818532,-0.0000708,0.0000554,-1.278546625,0.202013123,neg,ns,0.925175615,Ago3,Ago3_Exon,4,126345496,126345545,126345544,126345545,50,-,AAGGTATCTTGGTGAATCTGTACAGCCTTGGCAAGAGCTTGTGGATCTCG,"Exon (Ago3-201/Ago3, exon 19 of 19)",4,126331704,126350320,18617,2,Ago3-204,4775,Ago3-204;Ago3-201;Ago3-203,Ago3;Ago3;Ago3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,8,214150,ENSMUSG00000028842,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22704,cg05521636,-0.0000212,0.00000668,-3.172641873,0.001661999,loss,ns,-0.0000128,0.0000114,-1.126026022,0.26102546,neg,ns,0.008566011,0.003326287,2.57524675,0.010480188,pos,ns,1.979630906,-0.000185727,0.000114391,-1.623622933,0.105472679,neg,ns,0.880581017,Sox6,Sox6_Intron,7,115755264,115755313,115755312,115755313,50,-,ATAAATAATACATTGACAATTTTCAGTAAATAAGCAGTGGACACAAATCG,"Intron (Sox6-210/Sox6, intron 4 of 15)",7,115470872,116031047,560176,2,Sox6-210,275734,Sox6-210;Sox6-201;Sox6-202;Sox6-204;Sox6-205;Sox6-203;Sox6-212;Sox6-206;Sox6-209;Sox6-214,Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,37,57,20679,ENSMUSG00000051910,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21363,cg08206124,0.0000263,0.00000834,3.154978201,0.001762598,gain,ns,0.000016,0.0000142,1.126021786,0.261027251,pos,ns,0.009072259,0.004151258,2.185424137,0.029605893,pos,ns,1.528621832,-0.000129092,0.000142761,-0.904248936,0.366565585,neg,ns,0.238771291,Cacna2d2,Cacna2d2_Intron,9,107479660,107479709,107479708,107479709,50,+,TTCATAGGAGCTCGCTCTTCTGACAGATGTTGGAGTTTATTATCCCATCG,"Intron (Cacna2d2-201/Cacna2d2, intron 3 of 37)",9,107399612,107529343,129732,1,Cacna2d2-201,80048,Cacna2d2-201;Cacna2d2-205;Cacna2d2-202;Cacna2d2-203;Cacna2d2-204;Cacna2d2-208,Cacna2d2;Cacna2d2;Cacna2d2;Cacna2d2;Cacna2d2;Cacna2d2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,18,56808,ENSMUSG00000010066,conserved gene and region,9,107479672,107479843,172,*,172,10,0.552325581,0.801491146,0.058139535,0.00000923,CpGisland,TRUE,NA,NRS
27897,cg19537997,0.0000985,0.0000141,6.969057256,1.92E-11,gain,yes,-0.000027,0.000024,-1.126020104,0.261027961,neg,ns,0.028146634,0.007032671,4.002268079,0.0000785,pos,ns,4.104875565,-0.00003,0.000241853,-0.124033502,0.901369133,neg,ns,0.271134794,Prox1,Prox1_Intron,1,190155982,190156031,190155982,190155983,50,-,CGAGCTAAGCTCCATTCAAGGCCAGGAAAGAAAATGAGCACAAATAAATA,"Intron (Prox1-202/Prox1, intron 2 of 4)",1,190118035,190170714,52680,2,Prox1-202,14683,Prox1-202;Prox1-201;Prox1-203,Prox1;Prox1;Prox1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,59,19130,ENSMUSG00000010175,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23773,cg22222486,-0.000056,0.00000951,-5.891295003,9.98E-09,loss,yes,0.0000182,0.0000162,1.1259798,0.261044995,pos,ns,-0.006868065,0.004731474,-1.451569822,0.147632491,neg,ns,0.830818053,0.000101251,0.000162715,0.622256971,0.534230318,pos,ns,0.672579393,Foxo6,Foxo6_Intergenic_upstream,4,120326044,120326093,120326092,120326093,50,+,CAGGTCATGTCACAACATAATTAAAGCATTAGATCTTTGTGATGAAGCCG,Distal Intergenic,4,120267079,120287349,20271,2,Foxo6-201,-38695,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,9,42,329934,ENSMUSG00000052135,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18650,cg18262844,0.000112987,0.0000171,6.621125978,1.57E-10,gain,yes,0.0000326,0.000029,1.125955074,0.261055444,pos,ns,0.028917662,0.008493243,3.404784524,0.000749308,pos,ns,3.125339659,-0.000592338,0.000292082,-2.027984532,0.04341674,neg,ns,0.29343607,Skap1,Skap1_Intron,11,96579212,96579261,96579212,96579213,50,-,CGAAGGGGGAATAAAAAATGGCAATCGGATAGTACCAGCGGCAGGTCAAG,"Intron (Skap1-204/Skap1, intron 4 of 12)",11,96464593,96758941,294349,1,Skap1-204,114619,Skap1-204;Skap1-203;Skap1-209;Skap1-201;Skap1-205;Skap1-206;Skap1-208,Skap1;Skap1;Skap1;Skap1;Skap1;Skap1;Skap1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,40,46,78473,ENSMUSG00000057058,conserved gene and region,11,96578991,96579282,292,*,292,18,0.547945206,0.829545455,0.061643836,2.30E-10,CpGisland,TRUE,U9,En-Pp
16298,cg24667552,-0.0000228,0.00000791,-2.882627271,0.004219312,loss,ns,-0.0000151,0.0000134,-1.125859895,0.261095673,neg,ns,-0.006068584,0.003936504,-1.541617508,0.124186705,neg,ns,0.905924897,0.000252767,0.000135376,1.867143741,0.062825207,pos,ns,0.847295447,Mrm1,Mrm1_Intergenic_downstream,11,84723068,84723117,84723068,84723069,50,+,CGAGCACAGCCTGGGGAGCATTTACCAGATAATTAATATATTAAATGCAT,Distal Intergenic,11,84814743,84815390,648,2,Mrm1-203,92273,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,37,42,217038,ENSMUSG00000018405,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27942,cg24274564,-0.0000098,0.00000236,-4.162717707,0.0000408,loss,ns,-0.0000045,0.000004,-1.125769685,0.261133806,neg,ns,-0.001938906,0.001172243,-1.654013316,0.099136974,neg,ns,1.00376434,-0.0000145,0.0000403,-0.359374054,0.71955995,neg,ns,0.946964009,Rps6kc1,Rps6kc1_threeUTR,1,190798706,190798755,190798754,190798755,50,+,CACTCCACCTGCTAAAATACGTTAGCTGAATGTGTCCTAAAAACAAAACG,3' UTR,1,190700202,190911747,211546,2,Rps6kc1-204,112992,Rps6kc1-204;Rps6kc1-206;Rps6kc1-203;Rps6kc1-201;Rps6kc1-205;Rps6kc1-208,Rps6kc1;Rps6kc1;Rps6kc1;Rps6kc1;Rps6kc1;Rps6kc1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,29,320119,ENSMUSG00000089872,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25905,cg11926418,-0.00000696,0.00000155,-4.476828793,0.0000107,loss,ns,-0.00000297,0.00000264,-1.125622546,0.261196011,neg,ns,-0.00071638,0.000773391,-0.926284534,0.355018682,neg,ns,0.449748793,0.0000187,0.0000266,0.701503933,0.483514868,pos,ns,0.961064827,Aebp2,Aebp2_Exon,6,140642175,140642224,140642223,140642224,50,-,GTTGTTGGTGGCTGCAATGCCAGCTTTGCTTCTCAGGGAGGGCTAGCTCG,"Exon (Aebp2-201/Aebp2, exon 4 of 8)",6,140622663,140655481,32819,1,Aebp2-201,19512,Aebp2-201;Aebp2-202;Aebp2-203;Aebp2-205;Aebp2-206;Aebp2-209;Aebp2-208;Aebp2-207;Aebp2-204,Aebp2;Aebp2;Aebp2;Aebp2;Aebp2;Aebp2;Aebp2;Aebp2;Aebp2,0;0;0;0;0;5437;0;0;-4593,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,3,11569,ENSMUSG00000030232,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25722,cg06451951,-0.00000488,0.00000318,-1.533009184,0.126293471,loss,ns,0.00000609,0.00000541,1.125586778,0.261211134,pos,ns,-0.002218691,0.001584322,-1.400404718,0.162392244,neg,ns,0.789434716,0.0000726,0.0000545,1.331629008,0.183960432,pos,ns,0.860072905,Fam20c,Fam20c_threeUTR,5,138766641,138766690,138766689,138766690,50,-,GGGGCACGCAGCTGAAGCTCATCATGACCTTCCAGAATTACGGGCAAGCG,3' UTR,5,138754514,138810077,55564,1,Fam20c-201,12127,Fam20c-201;Fam20c-203,Fam20c;Fam20c,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,2,80752,ENSMUSG00000025854,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10633,cg24199085,-0.0000253,0.00000792,-3.189599634,0.001570439,loss,ns,0.0000151,0.0000135,1.125509462,0.261243826,pos,ns,-0.007572682,0.003943101,-1.920489046,0.055713346,neg,ns,1.254040758,0.000126086,0.000135603,0.929819201,0.353188178,pos,ns,0.852279957,Gm8881,Gm8881_Intergenic_downstream,16,54729121,54729170,54729121,54729122,50,-,CGCTATGAAGCATCTAAGGTCTGTCTGGGATAGTCGGAAATGTGTTTCTA,Distal Intergenic,16,54826498,54827894,1397,2,Gm8881-201,98773,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,667927,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4358,cg07001258,-0.00000147,0.0000024,-0.613603283,0.539927484,loss,ns,0.00000459,0.00000408,1.125445401,0.261270915,pos,ns,0.001843865,0.001195794,1.541958793,0.124103751,pos,ns,0.906215091,-0.0000451,0.0000411,-1.097320403,0.273352977,neg,ns,0.041316345,Wnt5a,Wnt5a_fiveUTR,14,28505727,28505776,28505775,28505776,50,-,TTGGAAAGCCCTAATTACCGCCGTCGCTGATGGACGTTGGAAACGGAGCG,Promoter (<=1kb),14,28504750,28527448,22699,1,Wnt5a-201,977,Wnt5a-201;Wnt5a-204;Wnt5a-206,Wnt5a;Wnt5a;Wnt5a,0;-124;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,8,22418,ENSMUSG00000021994,conserved gene and region,14,28505712,28506138,427,*,427,53,0.683840749,1.093760572,0.12412178,5.59E-46,CpGisland,TRUE,U3,Pr-B
3086,cg05943335,0.0000422,0.00000671,6.29526586,1.05E-09,gain,yes,0.0000128,0.0000114,1.125340875,0.26131512,pos,ns,0.01041171,0.00333905,3.118165578,0.001990576,pos,ns,2.701021187,-0.000135689,0.00011483,-1.181656792,0.238247581,neg,ns,0.078966709,Slc2a12,Slc2a12_fiveUTR,10,22645001,22645050,22645001,22645002,50,+,CGAAAAGGGCAAAGCCTTCGGAAATAGAAACAAAGTTGGTCACAAATCAC,Promoter (<=1kb),10,22645011,22704285,59275,1,Slc2a12-201,0,Slc2a12-201;Slc2a12-202,Slc2a12;Slc2a12,0;-3958,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,2,353169,ENSMUSG00000037490,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2869,cg02136286,-0.00000588,0.00000426,-1.380499322,0.168427531,loss,ns,0.00000815,0.00000724,1.12524936,0.261353826,pos,ns,0.000777089,0.002121415,0.366306753,0.71438606,pos,ns,0.146067028,-0.0000594,0.000073,-0.814224347,0.416141447,neg,ns,0.915791881,Ccdc178,Ccdc178_Intron,18,21996327,21996376,21996375,21996376,50,-,TAAGCTCCATTGCCTTTTCTTGTTTTGAACTAATGTATTCTTGATCACCG,"Intron (Ccdc178-204/Ccdc178, intron 21 of 23)",18,21810893,22171442,360550,2,Ccdc178-204,175066,Ccdc178-204;Ccdc178-201;Ccdc178-202,Ccdc178;Ccdc178;Ccdc178,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,19,21,70950,ENSMUSG00000024306,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17001,cg06908520,0.0000296,0.00000809,3.659399188,0.000297037,gain,ns,-0.0000155,0.0000137,-1.125221625,0.261365558,neg,ns,0.007997324,0.004024068,1.987372662,0.047760811,pos,ns,1.320928311,-0.000203905,0.000138387,-1.473436645,0.141647994,neg,ns,0.42892125,Zfp423,Zfp423_Intron,8,87833810,87833859,87833858,87833859,50,+,GATTCTACAGCAATTTAGCAGGCCTCTAAGAAACCCACCAGAGACCCGCG,"Intron (Zfp423-202/Zfp423, intron 3 of 7)",8,87661810,87959595,297786,2,Zfp423-202,125736,Zfp423-202;Zfp423-201;Zfp423-207;Zfp423-205;Zfp423-204,Zfp423;Zfp423;Zfp423;Zfp423;Zfp423,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,42,53,94187,ENSMUSG00000045333,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22498,cg10898494,-0.0000191,0.0000171,-1.117965785,0.264447226,loss,ns,-0.0000326,0.000029,-1.125189806,0.261379017,neg,ns,-0.013746884,0.008495315,-1.61817235,0.106642427,neg,ns,0.97206998,0.001765249,0.000292153,6.042205216,4.35E-09,pos,yes,0.441491508,Gprc5c,Gprc5c_threeUTR,11,114868510,114868559,114868510,114868511,50,-,CGACATCATCCTCCCACGGGCCACCGCCAACAGCCAGGTGATGGGCAGTG,3' UTR,11,114851173,114869096,17924,1,Gprc5c-203,17337,Gprc5c-204;Gprc5c-203;Gprc5c-208;Gprc5c-202;Gprc5c-201;Gprc5c-205;Gprc5c-206;Gprc5c-207,Gprc5c;Gprc5c;Gprc5c;Gprc5c;Gprc5c;Gprc5c;Gprc5c;Gprc5c,17358;0;0;0;0;16630;16191;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,70355,ENSMUSG00000051043,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
16300,cg23081020,0.0000649,0.0000142,4.571963548,0.00000699,gain,ns,0.0000271,0.0000241,1.125107132,0.26141399,pos,ns,0.025993839,0.007066759,3.678325316,0.000276702,pos,ns,3.557987961,-0.00000136,0.000243025,-0.005595248,0.99553926,neg,ns,0.234588267,G430095P16Rik,G430095P16Rik_Exon,8,84723730,84723779,84723778,84723779,50,+,GGTCTGACTCCAGCAAGCACAGGCAGCGGGTGGTGGGTGAAAGCCATGCG,Promoter (<=1kb),8,84723007,84726844,3838,1,G430095P16Rik-201,723,G430095P16Rik-201;Nfix-204;Nfix-201;Nfix-202;Nfix-203;Nfix-205,G430095P16Rik;Nfix;Nfix;Nfix;Nfix;Nfix,0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,619292,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
1838,cg18926054,-0.0000359,0.00000791,-4.538026424,0.00000813,loss,ns,0.0000151,0.0000134,1.125033246,0.261445249,pos,ns,-0.008397397,0.003936965,-2.132962391,0.033713054,neg,ns,1.472201904,0.0000276,0.000135392,0.20388347,0.83857834,pos,ns,0.804789265,Psat1,Psat1_Intergenic_downstream,19,15534511,15534560,15534511,15534512,50,+,CGGTTATTACCTGTCTGTTCATGCTGGAAGCAAGATGCAGAAGCCAGAGG,Distal Intergenic,19,15905130,15909712,4583,2,Psat1-204,375152,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,14,17,107272,ENSMUSG00000024640,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3304,cg10761154,0.00000827,0.00000288,2.867531196,0.004420372,gain,ns,-0.00000551,0.0000049,-1.124935621,0.261486554,neg,ns,0.003394385,0.001435364,2.364824286,0.018654364,pos,ns,1.729219553,-0.000037,0.0000494,-0.748768573,0.454564443,neg,ns,0.93579325,Spopl,Spopl_threeUTR,2,23515229,23515278,23515277,23515278,50,-,TCTACTGAGAGGTTACTACACAAAGCTTCTTCGCACATGACCTTCAGCCG,3' UTR,2,23506220,23572104,65885,2,Spopl-203,56826,Spopl-203;Spopl-201;Spopl-204;Spopl-206;Spopl-205,Spopl;Spopl;Spopl;Spopl;Spopl,0;0;0;0;22222,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,3,76857,ENSMUSG00000026771,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23852,cg07279255,0.000182715,0.00000809,22.5717685,2.09E-67,gain,yes,-0.0000155,0.0000138,-1.124870279,0.261514203,neg,ns,0.017705741,0.004028879,4.394706756,0.0000153,pos,ns,4.816645871,-0.0000036,0.000138553,-0.025987468,0.979284055,neg,ns,0.216192476,En1,En1_Promoter,1,120602318,120602367,120602318,120602319,50,+,CGGCCCTGACTCACGTGCTTCCGGTTTGAAGGCAAAAAGTGTGCCTGGGT,Promoter (<=1kb),1,120602418,120607992,5575,1,En1-201,-51,En1-201,En1,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,23,36,13798,ENSMUSG00000058665,conserved gene and region,1,120602094,120602340,247,*,247,23,0.668016194,0.838400236,0.093117409,4.24E-17,CpGisland,TRUE,U3,Pr-B
24040,cg10653296,-0.00000201,0.00000131,-1.527277999,0.127711536,loss,ns,-0.00000251,0.00000223,-1.124616517,0.261621599,neg,ns,-0.0000608,0.000653544,-0.093036702,0.925934502,neg,ns,0.033419733,-0.00000972,0.0000225,-0.432686914,0.665543097,neg,ns,0.979245449,Clybl,Clybl_Intron,14,122233252,122233301,122233252,122233253,50,+,CGCCACCCTGACCAGCGAGCCCAGATGGCGCTTAAATCTGTCACTCTTTA,"Intron (Clybl-201/Clybl, intron 1 of 7)",14,122181704,122402234,220531,1,Clybl-201,51548,Clybl-201,Clybl,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,13,69634,ENSMUSG00000025545,conserved gene and region,14,122233179,122233304,126,*,126,10,0.523809524,1.157024793,0.079365079,0.000000572,CpGisland,TRUE,NA,NRS
7747,cg06721025,0.0000156,0.00000292,5.324652224,0.000000195,gain,yes,-0.00000559,0.00000497,-1.124443057,0.261695028,neg,ns,0.003798671,0.001455694,2.609525887,0.009506673,pos,ns,2.021971441,-0.000141643,0.0000501,-2.829401069,0.004967652,neg,ns,0.933784794,Arhgap15,Arhgap15_Intron,2,44081130,44081179,44081178,44081179,50,+,TATAAGTTGTAAACTCCTAAATTACCCTAAATTAGAGACACTATTAATCG,"Intron (Arhgap15-203/Arhgap15, intron 8 of 14)",2,43748824,44395953,647130,1,Arhgap15-203,332306,Arhgap15-203;Arhgap15-202;Arhgap15-201;Arhgap15-204,Arhgap15;Arhgap15;Arhgap15;Arhgap15,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,72,78,76117,ENSMUSG00000049744,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15638,cg08204247,-0.000112818,0.0000209,-5.393529906,0.000000137,loss,yes,-0.00004,0.0000355,-1.124236479,0.261782495,neg,ns,0.059568924,0.01041072,5.721882957,2.48E-08,pos,ns,7.604926429,-0.001963517,0.000358024,-5.484318171,8.62E-08,neg,yes,0.629408198,Nfib,Nfib_Intron,4,82495006,82495055,82495054,82495055,50,-,GAATCAAAGGCATTCAGCAACTAGACAAAGAGGGTCTGATGCCAACCTCG,"Intron (Nfib-201/Nfib, intron 2 of 11)",4,82290173,82505308,215136,2,Nfib-201,10253,Nfib-201;Nfib-203;Nfib-202;Nfib-205;Nfib-206;Nfib-204;Nfib-207;Nfib-209;Nfib-210;Nfib-208;Nfib-212;Nfib-211,Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,66,18028,ENSMUSG00000008575,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7378,cg01599574,-0.0000127,0.00000524,-2.427039073,0.015792215,loss,ns,-0.00001,0.00000891,-1.124169232,0.261810972,neg,ns,-0.002428618,0.002608869,-0.930908299,0.352625376,neg,ns,0.452686437,0.00000701,0.0000897,0.078088158,0.937808305,pos,ns,0.908623819,R3hcc1l,R3hcc1l_Intergenic_upstream,19,42483771,42483820,42483819,42483820,50,+,GATAAATCTTGGTCCTTTCAGCAAAGCTTATCTGTAATGGGCTCGGCTCG,Distal Intergenic,19,42518759,42592343,73585,1,R3hcc1l-201,-34939,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,13,52013,ENSMUSG00000025184,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26810,cg26390416,-0.0000209,0.0000065,-3.221705272,0.001409748,loss,ns,0.0000124,0.000011,1.124133515,0.261826098,pos,ns,-0.010238882,0.003234975,-3.165057472,0.001704525,neg,ns,2.768396568,0.000163155,0.000111251,1.466553857,0.143511129,pos,ns,0.621474402,Zzz3,Zzz3_Exon,3,152427811,152427860,152427811,152427812,50,-,CGAGCTTGTCGATGTCTTATACTGGATGATTGTGAGAAAAGGGAAATTAA,"Exon (Zzz3-206/Zzz3, exon 4 of 4)",3,152395473,152459474,64002,1,Zzz3-204,32338,Zzz3-204;Zzz3-206;Zzz3-202;Zzz3-207;Zzz3-208;Zzz3-210;Zzz3-201;Zzz3-203,Zzz3;Zzz3;Zzz3;Zzz3;Zzz3;Zzz3;Zzz3;Zzz3,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,7,108946,ENSMUSG00000039068,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17864,cg00234378,-0.00000196,0.000000706,-2.781149652,0.005748217,loss,ns,0.00000135,0.0000012,1.124075203,0.261850795,pos,ns,0.00065126,0.000351149,1.854655843,0.064594799,pos,ns,1.189802447,-0.0000125,0.0000121,-1.03151502,0.303103452,neg,ns,0.02879519,Phf21a,Phf21a_Intron,2,92182774,92182823,92182822,92182823,50,+,GGCATAAAATACTTTCACTAATAAAATATGACAAACCGCCGGATTATACG,"Intron (Phf21a-201/Phf21a, intron 1 of 15)",2,92093117,92364666,271550,1,Phf21a-201,89657,Phf21a-201;Phf21a-202;Phf21a-204;Phf21a-209;Phf21a-208;Phf21a-207;Phf21a-212;Phf21a-219;Phf21a-206;Phf21a-216;Phf21a-221;Phf21a-220;Phf21a-210;Phf21a-205;Phf21a-211,Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,21,192285,ENSMUSG00000058318,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
16502,cg22680281,0.00000994,0.0000163,0.611152351,0.541546593,gain,ns,-0.000031,0.0000276,-1.124067602,0.261854014,neg,ns,0.010377777,0.008091485,1.282555243,0.200606113,pos,ns,0.697655838,-0.000603259,0.000278266,-2.16792685,0.030924893,neg,ns,0.431099876,Fbln1,Fbln1_Exon,15,85232546,85232595,85232546,85232547,50,+,CGAGTGTGAGAGTGGTATTCATAACTGCCTCCCCGATTTTATCTGTCAGA,"Exon (Fbln1-201/Fbln1, exon 8 of 17)",15,85205949,85286535,80587,1,Fbln1-201,26597,Fbln1-201;Fbln1-202,Fbln1;Fbln1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,14114,ENSMUSG00000006369,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17411,cg15517596,-0.00000389,0.00000431,-0.90457535,0.366392841,loss,ns,0.00000822,0.00000731,1.124066065,0.261854665,pos,ns,0.003372049,0.002142997,1.573520351,0.116618383,pos,ns,0.933232985,-0.000143265,0.0000737,-1.943957936,0.052805066,neg,ns,0.91465758,Nrxn1,Nrxn1_Intron,17,90163694,90163743,90163694,90163695,50,-,CGGAAAATTTATTTTTTATGTTTATTAGTGTTACAATGAAGTACTACTTG,"Intron (Nrxn1-202/Nrxn1, intron 18 of 20)",17,90033631,91088907,1055277,2,Nrxn1-202,925164,Nrxn1-202;Nrxn1-207;Nrxn1-216;Nrxn1-204;Nrxn1-217;Nrxn1-209;Nrxn1-201;Nrxn1-213;Nrxn1-206;Nrxn1-223;Nrxn1-219,Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,27,18189,ENSMUSG00000024109,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6705,cg26374954,0.000000356,0.00000543,0.065556736,0.947772991,gain,ns,0.0000104,0.00000923,1.124048768,0.261861991,pos,ns,-0.00192485,0.00270462,-0.711689783,0.477192105,neg,ns,0.32130675,0.000000469,0.000093,0.005039603,0.995982237,pos,ns,0.847689427,Pcdh1,Pcdh1_Intergenic_downstream,18,38142828,38142877,38142828,38142829,50,-,CGGTGTTTTAATCTATAATGGAACAGAAAGTATCATTATTGTTAAATAAT,Distal Intergenic,18,38188890,38203163,14274,2,Pcdh1-204,60335,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,17,75599,ENSMUSG00000051375,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10918,cg01167388,-0.00000987,0.00000665,-1.484571063,0.138673577,loss,ns,0.0000127,0.0000113,1.124022647,0.261873055,pos,ns,-0.007660712,0.003308187,-2.315682793,0.021227961,neg,ns,1.673091725,0.000208072,0.000113768,1.8289106,0.068373597,pos,ns,0.889750608,Tcf7l2,Tcf7l2_Intron,19,55887927,55887976,55887927,55887928,50,+,CGGGCTGCTAATTGATGTTTTTGATGTCAGCAAGAAAATTGAAGAAAATG,"Intron (Tcf7l2-213/Tcf7l2, intron 4 of 13)",19,55741820,55933229,191410,1,Tcf7l2-213,146107,Tcf7l2-213;Tcf7l2-201;Tcf7l2-208;Tcf7l2-211;Tcf7l2-212;Tcf7l2-206;Tcf7l2-204;Tcf7l2-205;Tcf7l2-222;Tcf7l2-215;Tcf7l2-214;Tcf7l2-207;Tcf7l2-202;Tcf7l2-209;Tcf7l2-210;Tcf7l2-217,Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,55,88,21416,ENSMUSG00000024985,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11891,cg23756667,-0.0000256,0.00000397,-6.443230841,4.46E-10,loss,yes,0.00000757,0.00000674,1.124012353,0.261877415,pos,ns,-0.004102429,0.001974125,-2.07809993,0.038522705,neg,ns,1.414283219,0.0000519,0.0000679,0.764843094,0.444946823,pos,ns,0.914593005,Gm34424,Gm34424_Intron,9,61527136,61527185,61527184,61527185,50,-,GTTATTACTCTGATGAATCACAGGGGAACAGCCTTCACCAAGGTAGAACG,"Intron (Gm34424-202/Gm34424, intron 4 of 4)",9,61509723,61534247,24525,1,Gm34424-202,17413,Gm34424-202,Gm34424,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,6,102637673,ENSMUSG00000111381,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5320,cg05879189,0.0000654,0.00000655,9.984655965,1.54E-20,gain,yes,-0.0000125,0.0000111,-1.123961769,0.261898841,neg,ns,0.007255207,0.003260188,2.225394951,0.026773888,pos,ns,1.572288564,0.0000578,0.000112118,0.515613501,0.606491895,pos,ns,0.055837841,Nkx1-1,Nkx1-1_Promoter,5,33433199,33433248,33433199,33433200,50,-,CGAAGGGATTTAATTGTTTTTCCAGCGATAACCAGCGTTTTGTCACAATT,Promoter (<=1kb),5,33430734,33433976,3243,2,Nkx1-1-201,728,Nkx1-1-201,Nkx1-1,0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,8,13,672284,ENSMUSG00000029112,conserved gene and region,5,33432835,33433235,401,*,401,27,0.518703242,1.022283071,0.067331671,3.24E-16,CpGisland,TRUE,U13,Hc-P
6738,cg09098248,0.00000328,0.00000484,0.678048433,0.498246768,gain,ns,0.00000924,0.00000822,1.123914826,0.261918726,pos,ns,0.007452075,0.002407398,3.095489802,0.002144233,pos,ns,2.66872799,-0.000219893,0.0000828,-2.656024406,0.008315774,neg,ns,0.913013395,Gsk3b,Gsk3b_threeUTR,16,38243512,38243561,38243560,38243561,50,-,CAATAACTCTAGCAATGTATAGTGTATCTATATAGTTTGGAGTGCCTTCG,3' UTR,16,38089001,38246084,157084,1,Gsk3b-201,154511,Gsk3b-201;Gsk3b-202;Gsk3b-205;Nr1i2-201,Gsk3b;Gsk3b;Gsk3b;Nr1i2,0;0;0;51263,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,11,56637,ENSMUSG00000022812,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16388,cg20006236,-0.0000392,0.00000928,-4.225968862,0.0000313,loss,ns,0.0000177,0.0000158,1.123850695,0.261945893,pos,ns,-0.003101635,0.004619722,-0.671389943,0.502472127,neg,ns,0.298888024,-0.000172558,0.000158872,-1.086147703,0.278257505,neg,ns,0.859668458,Gm26913,Gm26913_Intergenic_upstream,13,84805696,84805745,84805696,84805697,50,-,CGAGATAGGGGAATAATGTTTAATTGGCTCTCCAGAGTCCACTAATTTTC,Distal Intergenic,13,84690210,84690941,732,2,Gm26913-201,-114804,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,9,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16189,cg07450073,0.0000855,0.0000153,5.599309789,4.74E-08,gain,yes,0.0000291,0.0000259,1.123716956,0.262002555,pos,ns,0.024461155,0.007596493,3.220058792,0.001417603,pos,ns,2.848445224,-0.000530036,0.000261243,-2.028901123,0.0433227,neg,ns,0.527570844,Cacna1a,Cacna1a_Exon,8,84569936,84569985,84569984,84569985,50,+,GCGCTACTTTGAGATGTGCATCCTCATGGTCATTGCCATGAGCAGCATCG,"Exon (Cacna1a-213/Cacna1a, exon 24 of 49)",8,84338639,84640246,301608,1,Cacna1a-213,231297,Cacna1a-213;Cacna1a-201;Cacna1a-202;Cacna1a-211;Cacna1a-203,Cacna1a;Cacna1a;Cacna1a;Cacna1a;Cacna1a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,12,12286,ENSMUSG00000034656,conserved gene and region,8,84569877,84570165,289,*,289,17,0.598615917,0.69985755,0.058823529,1.66E-09,CpGisland,TRUE,NA,NRS
12871,cg10996224,-0.0000304,0.000018,-1.681649799,0.09364383,loss,ns,-0.0000345,0.0000307,-1.123508022,0.262091092,neg,ns,-0.028712201,0.008983649,-3.19605108,0.001536848,neg,ns,2.813369007,0.000842452,0.000308947,2.726848898,0.006758292,pos,ns,0.545000881,Cadm2,Cadm2_Intron,16,67610955,67611004,67611003,67611004,50,-,CCCTGTTCTATCCCACATGATCCCTGAAAAGGCTTTGAAATGAGGACACG,"Intron (Cadm2-201/Cadm2, intron 1 of 9)",16,66655421,67620908,965488,2,Cadm2-201,9904,Cadm2-201;Cadm2-202;Cadm2-203;Cadm2-204,Cadm2;Cadm2;Cadm2;Cadm2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,9,239857,ENSMUSG00000064115,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11278,cg09396858,0.0000584,0.0000108,5.433224576,0.000000112,gain,yes,-0.0000205,0.0000183,-1.123471554,0.262106548,neg,ns,0.013743832,0.005353774,2.567129853,0.010723372,pos,ns,1.969668611,-0.000506649,0.000184116,-2.751796349,0.006275842,neg,ns,0.261155017,Hand2,Hand2_Exon,8,57315296,57315345,57315344,57315345,50,-,TAACTGGAGACTTGGTGTACCCAAATTACCAAGGAGACCTCAGTCTGCCG,Promoter (5-6kb),8,57320983,57324633,3651,1,Hand2-201,-5687,NA,NA,NA,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,9,15111,ENSMUSG00000038193,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
13363,cg01052585,0.0000257,0.00000347,7.398363272,1.30E-12,gain,yes,-0.00000662,0.00000589,-1.123393666,0.26213956,neg,ns,0.003610023,0.001726821,2.090560318,0.03738173,pos,ns,1.427340607,-0.0000674,0.0000594,-1.135644117,0.256982762,neg,ns,0.063379314,Trim9,Trim9_Exon,12,70346424,70346473,70346472,70346473,50,+,ACACGGGCATCTTGCATTGCACGCAGTACATGCTGTGGTTCTCCAGCTCG,Promoter (<=1kb),12,70244533,70347350,102818,2,Trim9-202,877,Trim9-202;Trim9-201;Trim9-211;Trim9-209;Trim9-206;Trim9-203;Trim9-205;Trim9-210;Trim9-208,Trim9;Trim9;Trim9;Trim9;Trim9;Trim9;Trim9;Trim9;Trim9,0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,7,94090,ENSMUSG00000021071,conserved gene and region,12,70346427,70346953,527,*,527,46,0.669829222,0.803779841,0.087286528,2.41E-32,CpGisland,TRUE,U3,Pr-B
1148,cg04542842,0.0000173,0.0000132,1.311206418,0.190758413,gain,ns,0.0000252,0.0000224,1.123392921,0.262139876,pos,ns,0.0320577,0.006561318,4.885862911,0.00000165,pos,ns,5.781516714,-0.001026026,0.000225643,-4.547118723,0.00000781,neg,ns,0.583627141,Rpl23a-ps13,Rpl23a-ps13_Intergenic_upstream,X,11822043,11822092,11822043,11822044,50,+,CGGTTTGAACACAATTTGCCAGTGTTGGTTCAGCTCCGCTGGCTTCCAGT,Distal Intergenic,20,11867265,11867705,441,1,Rpl23a-ps13-201,-45173,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,13,14,628338,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21530,cg02914960,-0.0000302,0.00000309,-9.782414581,7.16E-20,loss,yes,-0.0000059,0.00000525,-1.123263941,0.262194549,neg,ns,0.006941939,0.001538088,4.513355197,0.00000907,pos,ns,5.042278271,-0.00027236,0.0000529,-5.149097557,0.000000466,neg,yes,0.918994499,Gnai3,Gnai3_threeUTR,3,108108312,108108361,108108312,108108313,50,-,CGATGGCAAACAGGGATTTGGCACCACATTTACAAAGTAAAAGCATGCAC,3' UTR,3,108107280,108146146,38867,2,Gnai3-201,37785,Gnai3-201,Gnai3,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,14679,ENSMUSG00000000001,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22649,cg27251107,-0.0000036,0.00000118,-3.057803539,0.002423966,loss,ns,-0.00000225,0.000002,-1.123232175,0.262208015,neg,ns,-0.000175683,0.000586442,-0.299574002,0.764702874,neg,ns,0.116507277,-0.000021,0.0000202,-1.040785946,0.298785935,neg,ns,0.032839788,BC052040,BC052040_Exon,2,115581940,115581989,115581940,115581941,50,+,CGCCTACCAGGCAGAGCCTGAGGAAGCTGAAGCAGAGGTTTCCCAGGTAA,Promoter (<=1kb),2,115581716,115778768,197053,1,BC052040-203,224,BC052040-203;BC052040-201;BC052040-202,BC052040;BC052040;BC052040,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,49,399568,ENSMUSG00000040282,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
22626,cg19669355,-0.0000112,0.00000459,-2.438258656,0.01531955,loss,ns,-0.00000877,0.00000781,-1.123206393,0.262218945,neg,ns,-0.006639967,0.00228672,-2.90370739,0.003952486,neg,ns,2.403129612,0.000243678,0.0000786,3.098650037,0.002122182,pos,ns,0.921203355,BC052040,BC052040_Intergenic_upstream,2,115468485,115468534,115468533,115468534,50,-,GCATTCCTTTCTAAAAAGCTGCAATTAATTACAAACTAGTTTTGATGCCG,Distal Intergenic,2,115581716,115778768,197053,1,BC052040-203,-113231,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,9,49,399568,ENSMUSG00000040282,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14280,cg12493206,0.0000936,0.0000147,6.370773867,6.79E-10,gain,yes,-0.000028,0.000025,-1.123202245,0.262220704,neg,ns,0.016770231,0.007313975,2.292902478,0.022522942,pos,ns,1.647374872,-0.000899284,0.000251527,-3.575299215,0.00040562,neg,ns,0.127726329,Smg6,Smg6_Intron,11,75047322,75047371,75047370,75047371,50,-,ATGACCAGGGTTACATAATGGGAAACATAGCTGGGGCTCTGGAGAGCCCG,"Intron (Smg6-201/Smg6, intron 12 of 18)",11,74925823,75164448,238626,1,Smg6-201,121499,Smg6-201;Smg6-202;Smg6-204,Smg6;Smg6;Smg6,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,34,103677,ENSMUSG00000038290,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
23602,cg10244902,-0.0000202,0.00000761,-2.657267119,0.008285873,loss,ns,-0.0000145,0.0000129,-1.123113014,0.262258535,neg,ns,-0.002264718,0.003787557,-0.597936187,0.550319076,neg,ns,0.259385433,-0.00018803,0.000130254,-1.443566482,0.14987074,neg,ns,0.720886304,Vps18,Vps18_Intergenic_downstream,2,119299945,119299994,119299945,119299946,50,-,CGGTGAGTCAGGGCAACGGGAAGCCACAGCTCTTAGATCCCTGGAAGCCA,Downstream (1-2kb),2,119288787,119298326,9540,1,Vps18-203,11207,Vps18-202;Vps18-201;Vps18-203,Vps18;Vps18;Vps18,0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,3,4,228545,ENSMUSG00000034216,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26746,cg04625072,-5.18E-08,0.00000236,-0.021929067,0.982518646,loss,ns,0.0000045,0.00000401,1.122993691,0.26230913,pos,ns,0.001658758,0.001175197,1.411472731,0.159108139,pos,ns,0.798307603,-0.0000266,0.0000404,-0.657155088,0.51156879,neg,ns,0.959963868,Phf13,Phf13_Exon,4,151991677,151991726,151991725,151991726,50,-,CAGGACAGGTGAATCCAGGTGTGGCACTCATTACACTCGATCATGGGGCG,"Exon (Phf13-201/Phf13, exon 4 of 4)",4,151989633,151996258,6626,2,Phf13-201,4532,Phf13-201;Thap3-201;Thap3-202;Thap3-203,Phf13;Thap3;Thap3;Thap3,0;-2680;-2707;-2697,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,230936,ENSMUSG00000047777,conserved gene and region,4,151991572,151991760,189,*,189,13,0.566137566,0.875623664,0.068783069,0.000000034,CpGisland,TRUE,U10,Tr-S
12780,cg27596707,-0.0000021,0.00000101,-2.086892763,0.037714521,loss,ns,-0.00000192,0.00000171,-1.122812252,0.262386077,neg,ns,-0.00000428,0.000501082,-0.008533763,0.993196614,neg,ns,0.00296477,-0.0000223,0.0000172,-1.292622121,0.19710439,neg,ns,0.038194919,Jmjd1c,Jmjd1c_Intron,10,67185555,67185604,67185555,67185556,50,-,CGCCACTAGTCTGTCTTTGTCTGTTGTTAAAATTATGAGCCAGTCTCTAT,"Intron (Jmjd1c-209/Jmjd1c, intron 2 of 2)",10,67096125,67191748,95624,1,Jmjd1c-209,89430,Jmjd1c-209;Jmjd1c-210;Jmjd1c-211;Jmjd1c-201;Jmjd1c-212;Jmjd1c-205;Jmjd1c-206;Jmjd1c-208,Jmjd1c;Jmjd1c;Jmjd1c;Jmjd1c;Jmjd1c;Jmjd1c;Jmjd1c;Jmjd1c,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,9,108829,ENSMUSG00000037876,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20531,cg04747504,-0.000013,0.00000499,-2.615179633,0.009354134,loss,ns,-0.00000952,0.00000848,-1.122722278,0.26242424,neg,ns,-0.004169253,0.002482999,-1.67912018,0.094136204,neg,ns,1.02624332,0.0000731,0.0000854,0.855872767,0.392729202,pos,ns,0.912998043,Gpr84,Gpr84_Intergenic_downstream,15,103300391,103300440,103300439,103300440,50,-,TGAATGTGGCTGGGCTGGCGCAGCGCCTGGCCCTGCATCTTAATGGGGCG,Downstream (<1kb),15,103308235,103310612,2378,2,Gpr84-201,10221,Copz1-202;Copz1-201;Copz1-204,Copz1;Copz1;Copz1,0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,3,5,80910,ENSMUSG00000063234,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3271,cg20733801,-0.00000695,0.00000288,-2.413469529,0.016381066,loss,ns,-0.00000549,0.00000489,-1.122696834,0.262435034,neg,ns,-0.002615052,0.001433116,-1.824731333,0.069003913,neg,ns,1.161126283,0.0000508,0.0000493,1.030311477,0.303666989,pos,ns,0.056667016,Kmt2e,Kmt2e_Intron,5,23435915,23435964,23435963,23435964,50,-,ATGTTGTGGTAATCTAATCAGCTCGGGTCCTCCACACCCCATGCAGTGCG,"Intron (Kmt2e-207/Kmt2e, intron 1 of 12)",5,23434441,23486400,51960,1,Kmt2e-207,1474,Kmt2e-207;Kmt2e-201;Kmt2e-202,Kmt2e;Kmt2e;Kmt2e,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,8,69188,ENSMUSG00000029004,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
26198,cg23165930,-0.0000053,0.00000222,-2.387465329,0.017563896,loss,ns,0.00000424,0.00000377,1.122684311,0.262440346,pos,ns,-0.000643264,0.001105721,-0.581759346,0.561151591,neg,ns,0.250919801,-0.00000799,0.000038,-0.21011527,0.833715736,neg,ns,0.951833801,Sox5,Sox5_Intron,6,144367894,144367943,144367942,144367943,50,+,TTTCCGCATATTAAATTAAATCCATAAATAAGAGTTTAGGCATTCACTCG,"Intron (Sox5-209/Sox5, intron 4 of 13)",6,143843739,144781977,938239,2,Sox5-209,414034,Sox5-209;Sox5-212,Sox5;Sox5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,71,20678,ENSMUSG00000041540,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17172,cg24795191,0.0000221,0.0000127,1.737160328,0.083352114,gain,ns,-0.0000242,0.0000216,-1.12254414,0.26249981,neg,ns,0.004312112,0.0063218,0.682101913,0.495683832,pos,ns,0.304795247,-0.000028,0.000217406,-0.128974724,0.897461286,neg,ns,0.303528022,Sall1,Sall1_Intron,8,89035865,89035914,89035913,89035914,50,-,TACACATTACAATGTAGTTGCTTCAAATATTTAGCACATCTGTGCTCACG,"Intron (Sall1-201/Sall1, intron 2 of 3)",8,89027235,89044162,16928,2,Sall1-201,8248,Sall1-201,Sall1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,15,58198,ENSMUSG00000031665,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17330,cg11160066,0.000108052,0.00000656,16.47929847,2.94E-44,gain,yes,-0.0000125,0.0000111,-1.122470584,0.262531019,neg,ns,0.009970701,0.003263405,3.055306274,0.002443639,pos,ns,2.611962988,-0.0000177,0.000112228,-0.157490368,0.874960928,neg,ns,0.141432374,Vcan,Vcan_fiveUTR,13,89742336,89742385,89742336,89742337,50,-,CGCCTGCAAGTTCAAATGCGGGTTGTGACACCCATCATCATTATATCACT,Promoter (<=1kb),13,89655312,89742509,87198,2,Vcan-203,124,Vcan-203;Vcan-206;Vcan-202;Vcan-201;Vcan-205;Vcan-209,Vcan;Vcan;Vcan;Vcan;Vcan;Vcan,0;0;0;0;-18;-1939,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,6,13003,ENSMUSG00000021614,conserved gene and region,13,89742082,89742416,335,*,335,23,0.605970149,0.757620452,0.068656716,4.35E-14,CpGisland,TRUE,U3,Pr-B
20277,cg24500832,0.0000245,0.00000541,4.517017099,0.00000893,gain,ns,0.0000103,0.0000092,1.122380306,0.262569326,pos,ns,-0.000219314,0.002694096,-0.0814054,0.935172087,neg,ns,0.029108465,0.0000732,0.0000926,0.790202797,0.430013391,pos,ns,0.014365899,Hoxc5,Hoxc5_Exon,15,102981892,102981941,102981892,102981893,50,-,CGGCCCCCAGCCCCACCTCGGCGCCGACACGCGCTACATGCGGACTTGGC,"Exon (Hoxc9-201/Hoxc9, exon 2 of 3)",15,102967443,103015676,48234,1,Hoxc5-202,14449,Hoxc5-202;Hoxc9-202;Hoxc9-201,Hoxc5;Hoxc9;Hoxc9,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,Exon,72,134,15424,ENSMUSG00000022485,conserved gene and region,15,102981651,102982178,528,*,528,70,0.696969697,1.109010712,0.132575758,6.92E-63,CpGisland,TRUE,U3,Pr-B
23431,cg04288975,0.00000154,0.00000776,0.198241951,0.842985706,gain,ns,-0.0000148,0.0000132,-1.122194424,0.262648211,neg,ns,-0.011489448,0.003863479,-2.973860482,0.003171602,neg,ns,2.498721308,0.000355747,0.000132865,2.677514695,0.007812127,pos,ns,0.106258912,Dpyd,Dpyd_Intron,3,118431429,118431478,118431477,118431478,50,-,AATTGAATATGCACCCAGCGGCAGTGGTCTCGTAGGAAATGGTGTTCTCG,"Intron (Gm26871-202/Gm26871-202, intron 1 of 2)",3,118562129,119432924,870796,1,Dpyd-201,-130700,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,14,29,99586,ENSMUSG00000033308,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14492,cg16211444,-0.0000926,0.0000121,-7.683154791,2.06E-13,loss,yes,0.000023,0.0000205,1.122187842,0.262651005,pos,ns,-0.013466614,0.005998288,-2.24507605,0.025467967,neg,ns,1.594005728,0.0000213,0.000206281,0.103137236,0.917920739,pos,ns,0.665145595,Kdr,Kdr_Intron,5,75974717,75974766,75974765,75974766,50,-,AGTTCCTGTTTTCCTGCATTGCCAACTTCAAGGTCTTACAAAAGGATACG,"Intron (Kdr-201/Kdr, intron 1 of 29)",5,75932827,75978458,45632,2,Kdr-201,3692,Kdr-201;Kdr-203;Kdr-202,Kdr;Kdr;Kdr,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,16542,ENSMUSG00000062960,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10865,cg21719053,0.00000374,0.00000398,0.940648963,0.347617174,gain,ns,-0.00000758,0.00000676,-1.122153234,0.262665694,neg,ns,-0.002484076,0.001979017,-1.255206782,0.210349076,neg,ns,0.677059391,0.0000249,0.0000681,0.366434872,0.714290568,pos,ns,0.864984825,Neurod6,Neurod6_Exon,6,55678720,55678769,55678720,55678721,50,+,CGGTGGGCAACCTGAACATGGCACCCTGCCCAAGGGGACCCCTGGGTGGC,"Exon (Neurod6-201/Neurod6, exon 2 of 2)",6,55677822,55681263,3442,2,Neurod6-201,2494,Neurod6-201,Neurod6,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,16,11922,ENSMUSG00000037984,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27062,cg26012170,0.0000726,0.000014,5.187528627,0.000000386,gain,yes,-0.0000267,0.0000238,-1.122059804,0.262705352,neg,ns,0.022038643,0.006968722,3.162508424,0.001719042,pos,ns,2.764713421,-0.000448634,0.000239654,-1.872007232,0.062147013,neg,ns,0.411145529,Blcap,Blcap_fiveUTR,2,157558279,157558328,157558279,157558280,50,-,CGCTGTGCTCTCTGGCTGTCAGCCCGGGATCACCAAGGCAGCAGGGATCC,5' UTR,2,157556362,157566337,9976,2,Blcap-202,8009,Blcap-202;Blcap-201;Blcap-205;Blcap-204;Nnat-205;Nnat-208;Nnat-202;Nnat-210;Nnat-207;Nnat-209;Nnat-206;Nnat-201;Nnat-204;Nnat-203,Blcap;Blcap;Blcap;Blcap;Nnat;Nnat;Nnat;Nnat;Nnat;Nnat;Nnat;Nnat;Nnat;Nnat,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,9,53619,ENSMUSG00000067787,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15004,cg24570563,0.0000799,0.0000107,7.43389346,1.04E-12,gain,yes,-0.0000205,0.0000182,-1.122052661,0.262708384,neg,ns,0.014821722,0.005346109,2.772431586,0.005900566,pos,ns,2.229106362,-0.000366469,0.000183852,-1.993280068,0.047106967,neg,ns,0.231285196,Pou4f2,Pou4f2_Exon,8,78435660,78435709,78435708,78435709,50,+,GCCCGCCGAATATATTGCTCTGCAATTGTAAGTAGAAGGCACACATTACG,Promoter (<=1kb),8,78433010,78436645,3636,2,Pou4f2-201,936,Pou4f2-201,Pou4f2,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,23,18997,ENSMUSG00000031688,conserved gene but different region,8,78435708,78435860,153,*,153,12,0.588235294,0.908461158,0.078431373,3.11E-08,CpGisland,TRUE,U13,Hc-P
12716,cg21815569,-0.00000953,0.00000259,-3.675083311,0.00028009,loss,ns,0.00000494,0.0000044,1.122041212,0.262713244,pos,ns,0.001791951,0.00129012,1.388980751,0.165835606,pos,ns,0.780322219,-0.000149753,0.0000444,-3.375322417,0.000831097,neg,ns,0.950724354,Gm43516,Gm43516_Intergenic_upstream,3,66938956,66939005,66938956,66938957,50,+,CGGGGAAATTCATCTCACATCATAGAGCCTAATTTAATAAGGGATCATTC,Distal Intergenic,3,66953541,66953862,322,1,Gm43516-201,-14536,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,11,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14009,cg01551615,-0.0000754,0.0000884,-0.852761001,0.394450222,loss,ns,-0.000168415,0.00015012,-1.121867141,0.262787145,neg,ns,-0.144000095,0.043980144,-3.274206962,0.001179431,neg,ns,2.928327627,0.003339553,0.001512474,2.208007355,0.02797558,pos,ns,0.19589151,Rasl11b,Rasl11b_Intron,5,74197804,74197853,74197852,74197853,50,-,GACTTACTGTCTAGCCAGTTAATTTCCCATTTTGTGCAACTACAAAGTCG,"Intron (Rasl11b-201/Rasl11b, intron 3 of 3)",5,74195286,74199481,4196,1,Rasl11b-201,2518,Rasl11b-201;Rasl11b-202;Rasl11b-203,Rasl11b;Rasl11b;Rasl11b,0;2359;-38,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,68939,ENSMUSG00000049907,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27826,cg13296416,-0.00000456,0.0000131,-0.349267123,0.727125905,loss,ns,-0.0000249,0.0000222,-1.12183536,0.262800639,neg,ns,-0.016113587,0.006496845,-2.48021735,0.013660939,neg,ns,1.86451945,0.000339846,0.000223426,1.521069841,0.129261626,pos,ns,0.670823347,Esrrg,Esrrg_Intron,1,188154798,188154847,188154846,188154847,50,-,TAAGCGCATGCTAACACAATATGATTGAGCTGTAAAATGGAACGCTGTCG,"Intron (Esrrg-203/Esrrg, intron 6 of 7)",1,187609029,188214386,605358,1,Esrrg-203,545769,Esrrg-203;Esrrg-201;Esrrg-202,Esrrg;Esrrg;Esrrg,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,60,26381,ENSMUSG00000026610,conserved gene and region,1,188154784,188154881,98,*,98,9,0.479591837,1.603636364,0.091836735,0.000000773,CpGisland,TRUE,U9,En-Pp
27657,cg01664666,0.0000469,0.00000644,7.273257382,2.89E-12,gain,yes,-0.0000123,0.0000109,-1.121832854,0.262801703,neg,ns,0.006916835,0.003207177,2.156674243,0.031799674,pos,ns,1.497577333,-0.000296269,0.000110295,-2.686163691,0.007617302,neg,ns,0.079525506,Pld5,Pld5_Exon,1,176274713,176274762,176274761,176274762,50,-,CCAGACGCTGGCGCTGTAGTCCTGCTGCTTGACGCTGCTGTAGAAGTTCG,Promoter (<=1kb),1,175962306,176275298,312993,2,Pld5-201,536,Pld5-201;Pld5-204;Pld5-205;Pld5-202,Pld5;Pld5;Pld5;Pld5,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,319455,ENSMUSG00000055214,conserved gene and region,1,176274634,176274960,327,*,327,27,0.654434251,0.771428571,0.082568807,1.48E-18,CpGisland,TRUE,U13,Hc-P
14098,cg25565513,0.0000275,0.00000382,7.192555786,4.80E-12,gain,yes,-0.00000729,0.0000065,-1.121652769,0.262878175,neg,ns,0.004293985,0.001903721,2.255574495,0.024794272,pos,ns,1.605648642,-0.000122091,0.0000655,-1.864866284,0.063144896,neg,ns,0.025288664,Hoxd13,Hoxd13_Exon,2,74669978,74670027,74670026,74670027,50,-,GAGAACGAGTATGCCATTAACAAATTCATTAACAAGGACAAGCGGCGGCG,"Exon (Hoxd13-201/Hoxd13, exon 2 of 2)",2,74668310,74671599,3290,1,Hoxd13-201,1668,Hoxd12-201;Hoxd13-201,Hoxd12;Hoxd13,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,15433,ENSMUSG00000001819,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
6554,cg12880255,0.0000183,0.00000811,2.259424849,0.024551107,gain,ns,0.0000155,0.0000138,1.121614596,0.262894387,pos,ns,0.000652648,0.004037791,0.161634995,0.871698591,pos,ns,0.059633656,0.000088,0.000138859,0.633903764,0.526611077,pos,ns,0.07960073,Cyp26a1,Cyp26a1_Exon,19,37697923,37697972,37697923,37697924,50,+,CGCTGCTGGCCAGTGCGCTCTGCACCTTCGTGCTGCCGCTGCTGCTCTTC,Promoter (<=1kb),19,37697798,37701536,3739,1,Cyp26a1-201,125,Cyp26a1-201;Cyp26a1-202;Cyp26c1-201,Cyp26a1;Cyp26a1;Cyp26c1,0;0;12342,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,13082,ENSMUSG00000024987,conserved gene and region,19,37697813,37698048,236,*,236,25,0.716101695,0.831220062,0.105932203,5.14E-20,CpGisland,TRUE,U3,Pr-B
4911,cg16953026,0.0000184,0.00000496,3.707916929,0.000247514,gain,ns,0.00000946,0.00000843,1.121608439,0.262897002,pos,ns,0.002993269,0.002470876,1.211419995,0.226657111,pos,ns,0.644630651,0.00000937,0.000085,0.110315923,0.912230212,pos,ns,0.853081668,Dnah1,Dnah1_Exon,14,31265910,31265959,31265910,31265911,50,-,CGAACACACAGCAGGAAGGCAAACATCAGCTTGTGCTTCTCAAAGAGGCT,"Exon (Dnah1-201/Dnah1, exon 66 of 78)",14,31260375,31323896,63522,2,Dnah1-201,57937,Dnah1-201;Dnah1-202,Dnah1;Dnah1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,110084,ENSMUSG00000019027,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21079,cg18061345,-0.0000253,0.00000926,-2.725624882,0.006782803,loss,ns,0.0000177,0.0000157,1.121604986,0.262898468,pos,ns,-0.005126584,0.004611192,-1.111769653,0.267098671,neg,ns,0.573328274,0.0000453,0.000158579,0.285905755,0.775141259,pos,ns,0.86204639,Dusp7,Dusp7_Exon,9,106370779,106370828,106370779,106370780,50,-,CGCCACCCACCTCAGTGCTGGGCCTGGGGGGCCTGCGCATCAGCTCTGAC,"Exon (Dusp7-201/Dusp7, exon 2 of 3)",9,106368632,106375724,7093,1,Dusp7-201,2147,Dusp7-201;Dusp7-202;Dusp7-203;Dusp7-204,Dusp7;Dusp7;Dusp7;Dusp7,0;0;0;-3791,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,4,235584,ENSMUSG00000053716,conserved gene and region,9,106370722,106370946,225,*,225,15,0.648888889,0.645438899,0.066666667,3.40E-09,CpGisland,TRUE,U12,Tr-I
6207,cg00784834,-0.0000106,0.00000699,-1.520033514,0.129521806,loss,ns,0.0000133,0.0000119,1.121361332,0.263001965,pos,ns,-0.00424804,0.003477905,-1.221436502,0.222848864,neg,ns,0.651989576,0.0000176,0.000119605,0.146889689,0.883314572,pos,ns,0.878003225,Gm9211,Gm9211_Intergenic_downstream,7,36329303,36329352,36329303,36329304,50,+,CGGAGTCTCTCAGCCCAACGAAGCTGCTGTGTCTTTGCCCCTGGATTTTA,Distal Intergenic,7,36234292,36235266,975,1,Gm9211-201,95011,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,12,15,668507,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5455,cg07480114,-0.00000824,0.00000204,-4.035414617,0.0000687,loss,ns,-0.00000389,0.00000347,-1.121315315,0.263021515,neg,ns,-0.000405597,0.001016769,-0.398907645,0.690235898,neg,ns,0.161002457,-0.0000375,0.000035,-1.072176879,0.284474553,neg,ns,0.96261186,Kalrn,Kalrn_Exon,16,34009266,34009315,34009314,34009315,50,+,CTACCTCCATGCTAGTATTAGGGTCAAGATCATCACACTCTGATTCCTCG,"Exon (Kalrn-212/Kalrn, exon 18 of 27)",16,33969073,34095987,126915,2,Kalrn-212,86672,Gm49594-201;Kalrn-212;Kalrn-201;Kalrn-220;Kalrn-209;Kalrn-211;Kalrn-217;Kalrn-210;Kalrn-221,Gm49594;Kalrn;Kalrn;Kalrn;Kalrn;Kalrn;Kalrn;Kalrn;Kalrn,-1809;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,18,22,545156,ENSMUSG00000061751,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6995,cg05261870,-0.00000538,0.0000119,-0.453194183,0.650725966,loss,ns,0.0000226,0.0000202,1.12131353,0.263022273,pos,ns,0.001081559,0.005908972,0.183036691,0.854888879,pos,ns,0.068090332,-0.0000901,0.000203209,-0.44343466,0.657760688,neg,ns,0.559807009,Gm12134,Gm12134_Intergenic_downstream,11,40456667,40456716,40456715,40456716,50,-,GACCAAACACTGTGACTATTTGTTTAATAACACAGTCTGAATGAAGGACG,Distal Intergenic,11,40429537,40430056,520,1,Gm12134-201,27179,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,100039241,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23980,cg18710779,0.00000278,0.00000408,0.680713074,0.496561171,gain,ns,-0.00000777,0.00000693,-1.121308467,0.263024424,neg,ns,0.004438749,0.00203018,2.186381607,0.029535141,pos,ns,1.529660956,-0.000121651,0.0000698,-1.742401849,0.082429847,neg,ns,0.908673921,D930020B18Rik,D930020B18Rik_threeUTR,10,121685847,121685896,121685895,121685896,50,-,GTTTGCTATTAGCTGGATAATGTCCTTTCTACAAAGCTGTCCTCCCATCG,3' UTR,10,121641701,121692892,51192,1,D930020B18Rik-203,44146,D930020B18Rik-203;D930020B18Rik-201;D930020B18Rik-202,D930020B18Rik;D930020B18Rik;D930020B18Rik,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,1,216393,ENSMUSG00000047642,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14042,cg22070454,-0.00000969,0.00000484,-2.000758031,0.046290155,loss,ns,-0.00000922,0.00000823,-1.121087408,0.263118353,neg,ns,0.000437814,0.002410381,0.181636726,0.855986532,pos,ns,0.067533068,-0.000105261,0.0000829,-1.269846823,0.205091561,neg,ns,0.899609864,Vil1,Vil1_Exon,1,74415965,74416014,74416013,74416014,50,-,GGCCATGCAGATGGTGCCTGTTCCTTCCAGCACCTTTGGAAGCTTCTTCG,"Exon (Vil1-201/Vil1, exon 3 of 20)",1,74409376,74435559,26184,1,Vil1-201,6589,Vil1-201;Vil1-202,Vil1;Vil1,0;-3039,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,22349,ENSMUSG00000026175,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
197,cg04327947,-0.0000255,0.0000132,-1.933402333,0.054096956,loss,ns,0.0000252,0.0000224,1.121065386,0.263127712,pos,ns,-0.006222706,0.006575655,-0.946324871,0.34471995,neg,ns,0.462533581,0.000328385,0.000226136,1.452155762,0.147469638,pos,ns,0.253362512,Brsk1,Brsk1_fiveUTR,7,4690603,4690652,4690651,4690652,50,+,AGGGTTAACTTTGGGGAAGGGCCCGGAGTCCCCGGATGGTGATGTCAGCG,Promoter (<=1kb),7,4690604,4715981,25378,1,Brsk1-202,0,Brsk1-202;Brsk1-201;Brsk1-205;Brsk1-204,Brsk1;Brsk1;Brsk1;Brsk1,0;-276;-428;-1591,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,1,381979,ENSMUSG00000035390,conserved gene and region,7,4690551,4690760,210,*,210,18,0.723809524,0.688901039,0.085714286,8.03E-13,CpGisland,TRUE,U3,Pr-B
986,cg11555797,0.0000834,0.00000621,13.4255948,1.04E-32,gain,yes,-0.0000118,0.0000106,-1.120909785,0.263193842,neg,ns,0.003075708,0.00309186,0.99477596,0.320621079,pos,ns,0.494007929,0.000167448,0.000106329,1.574809883,0.116320296,pos,ns,0.204259017,Sfmbt2,Sfmbt2_Exon,2,10373728,10373777,10373728,10373729,50,-,CGGGCTAAGGTGGCTTTTAAAAACTGAAAATAAAGGTTTTGAGGTGGGAA,"Exon (Gm13261-201/Gm13261-201, exon 1 of 4)",2,10370510,10439137,68628,1,Sfmbt2-203,3218,Sfmbt2-203;Sfmbt2-202;Sfmbt2-206;Sfmbt2-204;Sfmbt2-205;Sfmbt2-207;Sfmbt2-201,Sfmbt2;Sfmbt2;Sfmbt2;Sfmbt2;Sfmbt2;Sfmbt2;Sfmbt2,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,353282,ENSMUSG00000061186,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
19457,cg10947161,0.0000698,0.0000101,6.877548469,3.37E-11,gain,yes,-0.0000193,0.0000172,-1.120885888,0.263204,neg,ns,0.020148983,0.005050091,3.989825985,0.0000826,pos,ns,4.083186222,-0.000447426,0.000173672,-2.576264787,0.010450038,neg,ns,0.154018559,Foxp1,Foxp1_Intron,6,99364667,99364716,99364715,99364716,50,-,TGAGGCTGTTGGGTTTAATTTGGCCAAATAAAGGAACTCTCAACCCAACG,"Intron (Foxp1-204/Foxp1, intron 1 of 18)",6,98925342,99435345,510004,2,Foxp1-204,70629,Foxp1-204;Foxp1-220;Foxp1-221;Foxp1-222;Foxp1-224;Foxp1-227;Foxp1-219;Gm20696-201,Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Gm20696,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,87,108655,ENSMUSG00000030067,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
684,cg27300575,-0.0000033,0.00000103,-3.202109006,0.001505913,loss,ns,-0.00000196,0.00000175,-1.120837324,0.263224643,neg,ns,-0.000354777,0.000512867,-0.691752568,0.489610482,neg,ns,0.310149293,0.00000318,0.0000176,0.180396785,0.856958949,pos,ns,0.972510579,Yap1,Yap1_Exon,9,7950484,7950533,7950532,7950533,50,+,GAGCCTACCTGACATTTTGGAGAATTTGCTGTGCTGGGATTGATATTCCG,"Exon (Yap1-201/Yap1, exon 6 of 9)",9,7931999,8004588,72590,2,Yap1-202,54055,Yap1-202;Yap1-201;Yap1-210;Yap1-204;Yap1-206;Yap1-209,Yap1;Yap1;Yap1;Yap1;Yap1;Yap1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,22601,ENSMUSG00000053110,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15454,cg14318001,0.0000867,0.0000193,4.497428782,0.00000973,gain,ns,-0.0000367,0.0000327,-1.120759779,0.263257606,neg,ns,0.01671404,0.009591402,1.742606571,0.082393995,pos,ns,1.084104441,-0.000305847,0.000329848,-0.927237282,0.354524689,neg,ns,0.537181811,Srsf5,Srsf5_Exon,12,80948238,80948287,80948286,80948287,50,+,TGATCAGTTGGCCACCTCTAGATCTGTGTTTGCCGGTCTAGACGTTATCG,"Exon (Srsf5-207/Srsf5, exon 5 of 7)",12,80945504,80950507,5004,1,Srsf5-201,2734,Slc10a1-202;Slc10a1-201;Srsf5-201;Srsf5-204;Srsf5-207;Srsf5-202;Srsf5-203;Srsf5-212;Srsf5-211;Srsf5-206;Srsf5-208;Srsf5-210;Srsf5-205;Srsf5-209,Slc10a1;Slc10a1;Srsf5;Srsf5;Srsf5;Srsf5;Srsf5;Srsf5;Srsf5;Srsf5;Srsf5;Srsf5;Srsf5;Srsf5,20418;19792;0;0;0;0;0;0;2704;0;2668;2659;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,10,20384,ENSMUSG00000021134,conserved gene but different region,12,80948271,80948449,179,*,179,13,0.480446927,1.283507998,0.072625698,1.77E-08,CpGisland,TRUE,NA,NRS
5562,cg21898405,-0.00000601,0.00000415,-1.448459103,0.148499379,loss,ns,0.00000791,0.00000705,1.120720813,0.263274172,pos,ns,0.004999739,0.002066718,2.419168929,0.016131419,pos,ns,1.792327424,-0.000145567,0.0000711,-2.048092649,0.041393069,neg,ns,0.919505602,Apc,Apc_Exon,18,34261092,34261141,34261092,34261093,50,-,CGACAAGAGCTAGAAGATAATTCCAATCATCTTACAAAACTGGAAACTGA,"Exon (Apc-203/Apc, exon 2 of 16)",18,34220924,34313506,92583,1,Apc-209,40168,Apc-209;Apc-203;Apc-202;Apc-207;Apc-204;Apc-208;Apc-201,Apc;Apc;Apc;Apc;Apc;Apc;Apc,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,7,11789,ENSMUSG00000005871,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16599,cg05740609,0.00000366,0.00000262,1.394674406,0.164112613,gain,ns,-0.00000499,0.00000446,-1.120699356,0.263283294,neg,ns,-0.001883658,0.001305431,-1.442939911,0.150047062,neg,ns,0.823772504,0.000028,0.0000449,0.62293156,0.533787485,pos,ns,0.046899361,Six3,Six3_fiveUTR,17,85620814,85620863,85620862,85620863,50,+,AGGCTGTTGTCATTAGGGCGATTGCGGTGGAATCGCTGAATCTTGACTCG,Promoter (<=1kb),17,85620834,85626191,5358,1,Six3-203,0,Six3-202;Six3-203;Six3-201,Six3;Six3;Six3,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,24,20473,ENSMUSG00000038805,mapped to different genes,17,85620832,85620921,90,*,90,8,0.622222222,0.962566845,0.088888889,0.00000534,CpGisland,TRUE,NA,NRS
7090,cg03706094,0.0000225,0.00000872,2.580288909,0.010331618,gain,ns,-0.0000166,0.0000148,-1.120682413,0.263290497,neg,ns,0.005396035,0.004339096,1.243585063,0.214591917,pos,ns,0.66838664,-0.0000343,0.000149221,-0.230006198,0.81823865,neg,ns,0.866214654,Slc7a2,Slc7a2_Exon,8,40908103,40908152,40908151,40908152,50,-,CGGAGGATGGGTTGCTTTTCAAATGTCTAGCTCAAATCAATTCCAAAACG,"Exon (Slc7a2-202/Slc7a2, exon 7 of 12)",8,40862396,40918056,55661,1,Slc7a2-202,45707,Slc7a2-202;Slc7a2-201;Slc7a2-203;Slc7a2-204,Slc7a2;Slc7a2;Slc7a2;Slc7a2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,11988,ENSMUSG00000031596,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1885,cg03397604,-0.0000416,0.00001,-4.15468201,0.0000422,loss,ns,-0.000019,0.000017,-1.120532859,0.263354085,neg,ns,-0.003853293,0.004978151,-0.774041009,0.439496442,neg,ns,0.357044636,-0.000254312,0.000171198,-1.485480367,0.138432819,neg,ns,0.685348531,B230303A05Rik,B230303A05Rik_Intron,13,16007930,16007979,16007930,16007931,50,+,CGTCAGCAGCAGCTGAGCAAACTGACTACATTTAGTTGTGCGTGTGTATG,"Intron (B230303A05Rik-201/B230303A05Rik, intron 1 of 3)",13,15813548,16023360,209813,2,B230303A05Rik-201,15381,B230303A05Rik-201;B230303A05Rik-204;Inhba-201,B230303A05Rik;B230303A05Rik;Inhba,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,6,100503142,ENSMUSG00000113701,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27573,cg03524277,0.00000188,0.00000273,0.688289633,0.491785136,gain,ns,0.00000519,0.00000463,1.120464785,0.263383032,pos,ns,0.000733774,0.0013573,0.540612813,0.589162694,pos,ns,0.229764761,-0.0000868,0.0000467,-1.859492139,0.06390463,neg,ns,0.961776391,Ddr2,Ddr2_Exon,1,169997977,169998026,169998025,169998026,50,-,ATGGTATTGACACTTGATGGCACTGGCCATTCGGTGGTGGAGAGGCACCG,"Exon (Ddr2-205/Ddr2, exon 9 of 18)",1,169972307,170110561,138255,2,Ddr2-205,112535,Ddr2-205;Ddr2-202;Ddr2-201,Ddr2;Ddr2;Ddr2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,4,18214,ENSMUSG00000026674,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21377,cg27320080,0.00000216,0.00000322,0.670648506,0.502943804,gain,ns,-0.00000613,0.00000547,-1.120235131,0.263480706,neg,ns,-0.002274247,0.001603598,-1.418215286,0.157132384,neg,ns,0.803734299,0.000075,0.0000551,1.359285713,0.175044053,pos,ns,0.932964883,Apoo-ps,Apoo-ps_Intron,13,107540515,107540564,107540563,107540564,50,+,AGAGCTGCGGGCAACTCATGCATGTTTTATCCTCCATCTGGACCGGCACG,"Intron (Gm32004-204/Gm32004-204, intron 1 of 3)",13,107414144,107414729,586,2,Apoo-ps-201,-125786,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,5,621156,ENSMUSG00000049233,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10750,cg23777581,-0.00000117,0.00000169,-0.69006082,0.490672215,loss,ns,0.00000321,0.00000287,1.120198374,0.263496342,pos,ns,0.00153172,0.000840324,1.822772392,0.069301007,pos,ns,1.159260457,-0.0000578,0.0000289,-1.999287237,0.046449855,neg,ns,0.043154783,Ap1g2,Ap1g2_Exon,14,55105935,55105984,55105983,55105984,50,-,TGGGCGGGGTAGCCCAACATGTGGACGTAGAGCAGTTTGGCCAGCTGCCG,Promoter (<=1kb),14,55098575,55106534,7960,2,Ap1g2-209,550,Ap1g2-209;Ap1g2-203;Ap1g2-202;Ap1g2-201;Ap1g2-211;Ap1g2-204;Ap1g2-206;Ap1g2-210;Ap1g2-205;Ap1g2-208;Jph4-201;Jph4-202;Jph4-203,Ap1g2;Ap1g2;Ap1g2;Ap1g2;Ap1g2;Ap1g2;Ap1g2;Ap1g2;Ap1g2;Ap1g2;Jph4;Jph4;Jph4,0;0;0;0;0;0;-1425;-1044;0;0;0;0;4574,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,11766,ENSMUSG00000040701,mapped to different genes,14,55105939,55106394,456,*,456,28,0.583333333,0.736842105,0.061403509,9.78E-16,CpGisland,TRUE,U4,Pr-F
10042,cg14656600,-0.00000119,0.0000017,-0.701888874,0.483275092,loss,ns,0.00000324,0.00000289,1.120088725,0.263542987,pos,ns,-0.000188175,0.000846911,-0.222189439,0.824312723,neg,ns,0.083907997,0.0000275,0.0000291,0.942887051,0.346472906,pos,ns,0.046236387,Maml3,Maml3_Intron,3,52102288,52102337,52102336,52102337,50,+,GGAAGGATTCTTGAAGCCCAAGATAAACAAATTGTTCCTCTTCACGTGCG,"Intron (Maml3-202/Maml3, intron 1 of 4)",3,51685907,52105076,419170,2,Maml3-202,2739,Maml3-202,Maml3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,32,433586,ENSMUSG00000061143,conserved gene and region,3,52102332,52102636,305,*,305,34,0.708196721,0.889136586,0.11147541,6.93E-28,CpGisland,TRUE,U1,Pr-A
23957,cg02916375,-0.0000191,0.0000646,-0.295117524,0.768101655,loss,ns,0.000122894,0.000109757,1.119688091,0.263713468,pos,ns,-0.036575443,0.03215521,-1.137465509,0.256222135,neg,ns,0.591383354,0.002756838,0.001105815,2.493037306,0.013186994,pos,ns,0.709057902,Ccdc93,Ccdc93_Intergenic_upstream,1,121393772,121393821,121393772,121393773,50,-,CGGTGAAGTGAGCTGAGCCTTTACATTAGGAGAAAATCAGAATGGTATGA,Distal Intergenic,1,121431049,121506460,75412,1,Ccdc93-201,-37277,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,70829,ENSMUSG00000026339,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1083,cg24082948,-0.0000114,0.00000664,-1.720707324,0.086301769,loss,ns,0.0000126,0.0000113,1.119625732,0.26374001,pos,ns,0.00543609,0.00330668,1.643972004,0.101195706,pos,ns,0.994837913,-0.000195778,0.000113716,-1.721635054,0.086133224,neg,ns,0.892008288,Virma,Virma_Exon,4,11527687,11527736,11527687,11527688,50,+,CGAAAATTGTGGAGCATGCACCTTCATGTTCAAGCAAAGTTGCTCCAAGA,"Exon (Virma-202/Virma, exon 14 of 24)",4,11485958,11550684,64727,1,Virma-202,41729,Virma-201;Virma-202;Virma-203,Virma;Virma;Virma,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,66185,ENSMUSG00000040720,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12417,cg02607779,-0.00000477,0.00000138,-3.462581012,0.000610224,loss,ns,0.00000262,0.00000234,1.119412575,0.263830751,pos,ns,0.000506566,0.000685919,0.738521345,0.460756447,pos,ns,0.33652858,-0.0000137,0.0000236,-0.581844761,0.561094123,neg,ns,0.036760942,Klf7,Klf7_fiveUTR,1,64121374,64121423,64121422,64121423,50,+,ATGCAAACTCACTGACACGAAGCTGCCATCTATTTCTGCAGCGCTGTTCG,Promoter (<=1kb),1,64029447,64121491,92045,2,Klf7-202,68,Klf7-202;Klf7-201;Klf7-203,Klf7;Klf7;Klf7,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,6,21,93691,ENSMUSG00000025959,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
4936,cg07394963,0.000000768,0.00000211,0.363913629,0.716170578,gain,ns,0.00000401,0.00000358,1.11917336,0.263932612,pos,ns,0.002531785,0.001049931,2.411382663,0.016473325,pos,ns,1.783218737,-0.0000933,0.0000361,-2.583806015,0.010229103,neg,ns,0.949428112,Cbll1,Cbll1_Exon,12,31494695,31494744,31494695,31494696,50,-,CGAACATCAAGACCACCCAAGGATCCAGAACTATTAGTGCCTTGTAACTC,"Exon (Cbll1-201/Cbll1, exon 2 of 6)",12,31484829,31499555,14727,2,Cbll1-201,4811,Cbll1-201;Cbll1-204;Cbll1-203;Cbll1-205;Cbll1-202,Cbll1;Cbll1;Cbll1;Cbll1;Cbll1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,104836,ENSMUSG00000020659,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21245,cg19755091,0.0000362,0.00000497,7.286949425,2.65E-12,gain,yes,-0.00000945,0.00000845,-1.119025238,0.263995697,neg,ns,0.009711037,0.00247509,3.923508304,0.000107523,pos,ns,3.968497762,-0.000334281,0.0000851,-3.927256554,0.00010594,neg,ns,0.079627253,Ssbp3,Ssbp3_Intron,4,106956401,106956450,106956401,106956402,50,-,CGGCACTTGCAAGATATGGTTGCCGTAGCAACAGGCCTTCTAATCTGGTA,"Intron (Ssbp3-216/Ssbp3, intron 4 of 8)",4,106910701,107031069,120369,1,Ssbp3-216,45700,Ssbp3-216;Ssbp3-201;Ssbp3-215;Ssbp3-202;Ssbp3-203;Ssbp3-207;Ssbp3-213;Ssbp3-214;Ssbp3-211;Ssbp3-212;Ssbp3-204,Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,18,72475,ENSMUSG00000061887,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27061,cg03600422,0.0000648,0.0000128,5.076586575,0.000000664,gain,yes,-0.0000243,0.0000217,-1.119002318,0.26400546,neg,ns,0.028780338,0.006356367,4.527796438,0.00000851,pos,ns,5.070067913,-0.000971859,0.000218595,-4.44593669,0.0000122,neg,ns,0.508268262,Blcap,Blcap_fiveUTR,2,157558115,157558164,157558163,157558164,50,+,GATGAGGAGGACGGGCAGCAGCCACTGGAGGCAATACATGATCTCTGCCG,5' UTR,2,157556362,157566337,9976,2,Blcap-202,8173,Blcap-202;Blcap-201;Blcap-205;Blcap-204;Nnat-205;Nnat-208;Nnat-202;Nnat-210;Nnat-207;Nnat-209;Nnat-206;Nnat-201;Nnat-204;Nnat-203,Blcap;Blcap;Blcap;Blcap;Nnat;Nnat;Nnat;Nnat;Nnat;Nnat;Nnat;Nnat;Nnat;Nnat,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,9,53619,ENSMUSG00000067787,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17247,cg12927674,0.0000348,0.00000816,4.267406908,0.0000263,gain,ns,0.0000155,0.0000139,1.118973185,0.26401787,pos,ns,0.007483546,0.00405915,1.84362401,0.06619226,pos,ns,1.179192791,-0.000144135,0.000139594,-1.032533926,0.302626914,neg,ns,0.149920043,Nog,Nog_Promoter,11,89307869,89307918,89307917,89307918,50,+,GCCCGGTGGCTCATTCATCTCCTGATAAACTGTTTATCTGAGTTTTAACG,Promoter (5-6kb),11,89300638,89302332,1695,2,Nog-201,-5537,NA,NA,NA,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,3,36,18121,ENSMUSG00000048616,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22063,cg08147889,-0.00000324,0.0000034,-0.952604005,0.341532903,loss,ns,0.00000646,0.00000577,1.118494489,0.264221831,pos,ns,-0.000579377,0.001691207,-0.342582149,0.732145,neg,ns,0.135402899,-0.0000157,0.0000582,-0.270156854,0.787219345,neg,ns,0.936551014,Agbl4,Agbl4_Exon,4,110580131,110580180,110580131,110580132,50,-,CGAGTCTGGTTCAACTTTACTGTTGAAAATGTGAAAGAATCACAGGTGAG,"Exon (Agbl4-204/Agbl4, exon 2 of 3)",4,110397661,110955596,557936,1,Agbl4-204,182470,Agbl4-204;Agbl4-203;Agbl4-205;Agbl4-206;Agbl4-201;Agbl4-202,Agbl4;Agbl4;Agbl4;Agbl4;Agbl4;Agbl4,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,16,78933,ENSMUSG00000061298,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18569,cg09825961,0.000114065,0.0000144,7.908649387,4.62E-14,gain,yes,-0.0000274,0.0000245,-1.118398859,0.26426259,neg,ns,0.014322719,0.007178381,1.995257719,0.046889773,pos,ns,1.328921866,-0.000295299,0.000246864,-1.196203123,0.23253141,neg,ns,0.117630537,Hoxb6,Hoxb6_Intron,11,96296801,96296850,96296801,96296802,50,+,CGGATCAGACGAATAAACGCTCATAAATACCTCTGGGCTTAGATAAGAGC,"Intron (Hoxb6-202/Hoxb6, intron 1 of 2)",11,96292476,96301569,9094,1,Hoxb6-202,4325,Hoxb6-202;Hoxb6-201,Hoxb6;Hoxb6,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,16,15414,ENSMUSG00000000690,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
11770,cg25731502,0.0000191,0.0000144,1.331331065,0.184058294,gain,ns,-0.0000273,0.0000244,-1.11838206,0.26426975,neg,ns,0.01535715,0.007156457,2.145915194,0.03265594,pos,ns,1.486037808,-0.000740526,0.00024611,-3.008921229,0.002836797,neg,ns,0.346585156,Mbnl1,Mbnl1_fiveUTR,3,60529032,60529081,60529080,60529081,50,+,GATTTTGCTCTAAACTGCTGCATCTGTCTATGCCAAACTAATCAATACCG,5' UTR,3,60472830,60595764,122935,1,Mbnl1-222,56202,Mbnl1-222;Mbnl1-221;Mbnl1-216;Mbnl1-220;Mbnl1-211;Mbnl1-204;Mbnl1-201;Mbnl1-209;Mbnl1-202;Mbnl1-225;Mbnl1-217;Mbnl1-203;Mbnl1-218;Mbnl1-208;Mbnl1-219;Mbnl1-214;Mbnl1-207;Mbnl1-205;Mbnl1-212,Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,36,56758,ENSMUSG00000027763,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
11625,cg10520683,0.0000131,0.0000153,0.85999702,0.390455268,gain,ns,0.000029,0.0000259,1.118362474,0.264278098,pos,ns,0.012503796,0.007601432,1.644926462,0.100998557,pos,ns,0.995684829,-0.000019,0.000261413,-0.072710716,0.942083211,neg,ns,0.380312732,Emx2,Emx2_Intergenic_downstream,19,59470455,59470504,59470503,59470504,50,+,TATACACCACTAATGAGCAATTACCATATAATCACCTTCCAATTAGCTCG,Distal Intergenic,19,59462802,59464215,1414,1,Emx2-203,7653,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,15,23,13797,ENSMUSG00000043969,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
22665,cg00087778,-0.000008,0.00000488,-1.638893494,0.102249888,loss,ns,-0.00000927,0.00000829,-1.11835727,0.264280317,neg,ns,0.003013082,0.00242801,1.240967861,0.215555896,pos,ns,0.666440093,-0.000182947,0.0000835,-2.191012206,0.02919502,neg,ns,0.797068966,Bicdl1,Bicdl1_threeUTR,5,115649528,115649577,115649528,115649529,50,+,CGTGTCCATCAGCTGCCGGTCAATGACCCTGTGCATGTCATCCTGCAGAG,Promoter (<=1kb),5,115648175,115649794,1620,2,Bicdl1-210,217,Bicdl1-210;Bicdl1-201;Bicdl1-203;Bicdl1-204;Bicdl1-206;Bicdl1-207;Rab35-201;Rab35-202,Bicdl1;Bicdl1;Bicdl1;Bicdl1;Bicdl1;Bicdl1;Rab35;Rab35,0;0;0;0;0;20687;0;17387,TRUE,FALSE,TRUE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,2,75665,ENSMUSG00000041609,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16701,cg24831901,0.0000311,0.0000104,2.991439641,0.002999455,gain,ns,-0.0000198,0.0000177,-1.118324781,0.264294166,neg,ns,0.022618001,0.005176384,4.369459893,0.000017,pos,ns,4.769254406,-0.00050437,0.000178015,-2.833296668,0.004909041,neg,ns,0.12980071,Prkce,Prkce_Exon,17,86168875,86168924,86168923,86168924,50,+,GTGGCCAACTGCACCATCCAGTTTGAGGAGCTGCTGCAGAACGGGAGCCG,"Exon (Prkce-202/Prkce, exon 1 of 15)",17,86167785,86657919,490135,1,Prkce-202,1090,Prkce-202;Prkce-204;Prkce-201,Prkce;Prkce;Prkce,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,7,18754,ENSMUSG00000045038,conserved gene and region,17,86168631,86168971,341,*,341,31,0.618768328,0.951485149,0.090909091,1.51E-22,CpGisland,TRUE,U3,Pr-B
13557,cg01788057,-0.0000101,0.00000329,-3.060102597,0.002405983,loss,ns,-0.00000625,0.00000558,-1.118208002,0.264343948,neg,ns,-0.000549423,0.001636196,-0.335793154,0.737254003,neg,ns,0.132382861,-0.000081,0.0000563,-1.439318916,0.151069152,neg,ns,0.954300955,Dact1,Dact1_Exon,12,71317240,71317289,71317288,71317289,50,+,CACTTCATGCTGTGGCTGTGCAGAGCCCAATGTTTCTCCTTTGTCTGACG,"Exon (Dact1-201/Dact1, exon 4 of 4)",12,71309884,71320107,10224,1,Dact1-201,7356,Dact1-201;Dact1-202,Dact1;Dact1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,59036,ENSMUSG00000044548,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U14,Hc-H
22702,cg24935223,-0.0000534,0.0000152,-3.508054959,0.000518182,loss,ns,0.0000289,0.0000259,1.118005073,0.264430473,pos,ns,-0.002141978,0.007577235,-0.282685946,0.777606247,neg,ns,0.109240259,0.000351126,0.00026058,1.347474644,0.178811414,pos,ns,0.552630058,Sox6,Sox6_Intron,7,115750559,115750608,115750559,115750560,50,+,CGATTTTAATTTACCAAAAGAGCTTTGCTATTTTCAGAGCAGACTCCAGA,"Intron (Sox6-210/Sox6, intron 4 of 15)",7,115470872,116031047,560176,2,Sox6-210,280439,Sox6-210;Sox6-201;Sox6-202;Sox6-204;Sox6-205;Sox6-203;Sox6-212;Sox6-206;Sox6-209;Sox6-214,Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,37,57,20679,ENSMUSG00000051910,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1188,cg26214085,0.0000243,0.000011,2.217787798,0.027294009,gain,ns,0.0000208,0.0000186,1.118004486,0.264430723,pos,ns,0.02062958,0.005455407,3.781492306,0.000187017,pos,ns,3.728120018,-0.000628236,0.000187611,-3.348607232,0.000912381,neg,ns,0.652318219,Gm14512,Gm14512_Intergenic_downstream,X,12001463,12001512,12001511,12001512,50,+,AGCCTCAGATATCGGTAACCCCCATGATTAATTCATAACTCTCCACTGCG,Distal Intergenic,20,11984468,11984697,230,1,Gm14512-201,16995,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,22,22,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
24956,cg25483422,0.0000066,0.00000307,2.149466488,0.03237114,gain,ns,-0.00000584,0.00000522,-1.117941146,0.264457733,neg,ns,0.001505853,0.001529279,0.98468149,0.325548438,pos,ns,0.487384384,-0.000075,0.0000526,-1.426216293,0.154812176,neg,ns,0.888594787,Fgfr2,Fgfr2_Exon,7,130198509,130198558,130198557,130198558,50,-,CATTCCGAATATAGAGAACCTCAATCTCTTTGTCCGTGGTGTTAACACCG,"Exon (Fgfr2-207/Fgfr2, exon 6 of 16)",7,130162451,130266263,103813,2,Fgfr2-211,67705,Fgfr2-211;Fgfr2-217;Fgfr2-207;Fgfr2-226;Fgfr2-215;Fgfr2-201;Fgfr2-202;Fgfr2-203;Fgfr2-204;Fgfr2-205;Fgfr2-206;Fgfr2-208;Fgfr2-209;Fgfr2-210;Fgfr2-212;Fgfr2-213;Fgfr2-214;Fgfr2-216;Fgfr2-222;Fgfr2-225;Fgfr2-218,Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,79,14183,ENSMUSG00000030849,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6173,cg00451044,0.00000544,0.00000207,2.628429227,0.009005222,gain,ns,0.00000393,0.00000352,1.11764898,0.264582349,pos,ns,0.004051128,0.001030959,3.929476808,0.000105013,pos,ns,3.978756176,-0.00014726,0.0000355,-4.153478883,0.0000424,neg,ns,0.0523176,Tenm2,Tenm2_Exon,11,36221393,36221442,36221441,36221442,50,+,CAGCTGTAACCTCACCTTTGCCTCCAGATGGCATTGTTGCCACATCATCG,"Exon (Tenm2-202/Tenm2, exon 8 of 31)",11,36006656,37235882,1229227,2,Tenm2-202,1014440,Tenm2-202;Tenm2-208;Tenm2-201;Tenm2-204;Tenm2-205;Tenm2-206,Tenm2;Tenm2;Tenm2;Tenm2;Tenm2;Tenm2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,21,84,23964,ENSMUSG00000049336,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9016,cg26283610,-0.00000895,0.00000367,-2.442202418,0.015156403,loss,ns,-0.00000696,0.00000623,-1.117484892,0.264652355,neg,ns,-0.003327227,0.001824305,-1.823832675,0.069140073,neg,ns,1.160270167,-0.0000182,0.0000627,-0.289711001,0.772231014,neg,ns,0.917173193,Srf,Srf_Exon,17,46550897,46550946,46550945,46550946,50,+,ATACCTGTCCCGCTGGAGGAGGTCTGCGTGAGGTCTGTGCTGCTGTCACG,"Exon (Srf-201/Srf, exon 4 of 7)",17,46548329,46556175,7847,2,Srf-201,5229,Cul9-201;Cul9-204;Cul9-202;Srf-201;Srf-203;Srf-202;Srf-204,Cul9;Cul9;Cul9;Srf;Srf;Srf;Srf,-4509;-4509;-4596;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,11,20807,ENSMUSG00000015605,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19219,cg25491745,0.0000513,0.0000185,2.766013514,0.006015049,gain,ns,-0.0000352,0.0000315,-1.117479349,0.264654719,neg,ns,-0.013803242,0.009222201,-1.496740495,0.135478212,neg,ns,0.868130545,0.000650012,0.000317151,2.049536196,0.041250931,pos,ns,0.644144132,Wnt1,Wnt1_Intergenic_downstream,15,98798267,98798316,98798315,98798316,50,+,CACGCCCAGGTTGTGCGGCATTTGGGGAGTTTAATGAATTGTCCATCACG,Distal Intergenic,15,98789857,98793837,3981,1,Wnt1-201,8410,Wnt1-201,Wnt1,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,12,22408,ENSMUSG00000022997,conserved gene and region,15,98798040,98798354,315,*,315,21,0.666666667,0.6125,0.066666667,1.17E-12,CpGisland,TRUE,U13,Hc-P
8924,cg14140337,0.00010578,0.0000147,7.216768432,4.12E-12,gain,yes,-0.0000278,0.0000249,-1.117448535,0.264667867,neg,ns,0.0298401,0.007295219,4.090363871,0.000055,pos,ns,4.259997815,-0.000908702,0.000250882,-3.622029148,0.000341388,neg,ns,0.321013293,Psd,Psd_Exon,19,46314470,46314519,46314518,46314519,50,-,AGGTAGAGGATCATGCCCTTGAGGATCCCGTGGAAGCTCTTCCAGCCCCG,"Exon (Psd-211/Psd, exon 4 of 8)",19,46312087,46317591,5505,2,Psd-211,3072,Nfkb2-206;Nfkb2-201;Nfkb2-204;Nfkb2-202;Nfkb2-205;Nfkb2-207;Nfkb2-208;Psd-211;Psd-208;Psd-201;Psd-202;Psd-210;Psd-214,Nfkb2;Nfkb2;Nfkb2;Nfkb2;Nfkb2;Nfkb2;Nfkb2;Psd;Psd;Psd;Psd;Psd;Psd,10150;9726;9670;8774;8472;8472;8472;0;0;0;0;0;-166,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,6,73728,ENSMUSG00000037126,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26171,cg24932816,-0.0000006,0.000000999,-0.600116097,0.548867289,loss,ns,-0.0000019,0.0000017,-1.117444192,0.264669721,neg,ns,-0.000376404,0.000497294,-0.756903184,0.449682743,neg,ns,0.347093779,-0.000023,0.0000171,-1.346140605,0.179240711,neg,ns,0.018512026,Lmo4,Lmo4_Promoter,3,144205583,144205632,144205631,144205632,50,-,CCACTGGGCGGCCGGATTGTTCAGGCGGAATAATAAAACCTGCCAATCCG,Promoter (<=1kb),3,144188530,144205220,16691,2,Lmo4-201,-412,Lmo4-203;Lmo4-201;Lmo4-202;Lmo4-207;Lmo4-208;Lmo4-205;Lmo4-204,Lmo4;Lmo4;Lmo4;Lmo4;Lmo4;Lmo4;Lmo4,0;0;0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,5,54,16911,ENSMUSG00000028266,conserved gene and region,3,144205552,144205890,339,*,339,40,0.734513274,0.888597641,0.1179941,8.05E-34,CpGisland,TRUE,U1,Pr-A
21849,cg27088725,0.0000209,0.00000705,2.964686781,0.003264987,gain,ns,0.0000134,0.000012,1.117297013,0.264732526,pos,ns,0.007222794,0.003511073,2.057147322,0.040508357,pos,ns,1.392455369,-0.000234906,0.000120745,-1.94546347,0.052622933,neg,ns,0.781825537,Gm1943,Gm1943_Exon,8,109251478,109251527,109251478,109251479,50,-,CGAAACTGTGGCGTTGCCCCTGAATGGATGGCACGGTGCCAACTCTTCTG,"Exon (D030068K23Rik-202/D030068K23Rik-202, exon 10 of 10)",8,109340691,109340864,174,2,Gm1943-201,89386,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,28,384864,NA,mapped to different genes,8,109251360,109251796,437,*,437,24,0.544622426,0.749571184,0.054919909,1.62E-12,CpGisland,TRUE,U15,NS
581,cg05127380,-0.0000184,0.000013,-1.424031909,0.155443014,loss,ns,-0.0000246,0.000022,-1.117288615,0.26473611,neg,ns,-0.010433068,0.006446443,-1.618422403,0.106588538,neg,ns,0.972289495,-0.000339873,0.000221693,-1.533083706,0.126275113,neg,ns,0.092557612,Stip1,Stip1_fiveUTR,19,7039931,7039980,7039931,7039932,50,-,CGTTCCCAACCGCACGCGCCGCCTTCTGGAACCTACTAGAAGCTACCGGG,Promoter (<=1kb),19,7020702,7039967,19266,2,Stip1-201,0,Stip1-201,Stip1,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,1,20867,ENSMUSG00000024966,conserved gene and region,19,7039298,7040259,962,*,962,83,0.64033264,0.859224346,0.086278586,2.23E-57,CpGisland,TRUE,U1,Pr-A
24516,cg04986697,-0.00000478,0.00000608,-0.78698163,0.431893851,loss,ns,-0.0000115,0.0000103,-1.117133597,0.264802272,neg,ns,-0.001462891,0.003026052,-0.483432089,0.629130242,neg,ns,0.201259438,0.0000697,0.000104066,0.670231002,0.503209511,pos,ns,0.44508475,Nckap5,Nckap5_fiveUTR,1,126738192,126738241,126738192,126738193,50,-,CGAGCTTGTAAATACAAGCTCCGTGGACAAAGTCCCAAATGACATCACTG,Promoter (<=1kb),1,126258401,126738202,479802,2,Nckap5-206,0,Nckap5-202;Nckap5-204;Nckap5-209;Nckap5-206;Nckap5-211;Nckap5-210,Nckap5;Nckap5;Nckap5;Nckap5;Nckap5;Nckap5,0;0;0;0;-2;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,2,210356,ENSMUSG00000049690,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
8911,cg26430668,0.0000372,0.0000075,4.951375586,0.00000121,gain,yes,-0.0000142,0.0000127,-1.117110191,0.264812262,neg,ns,0.006837032,0.003735269,1.830398674,0.068150317,pos,ns,1.16653212,-0.000163609,0.000128456,-1.273664777,0.203736379,neg,ns,0.13986347,Helt,Helt_Promoter,8,46295223,46295272,46295223,46295224,50,-,CGTCACCTGCGAGAGGGGGCGCCTACAGACCCCTATTCATTTGCCTAATT,Promoter (<=1kb),8,46292039,46294671,2633,2,Helt-201,-601,Helt-201;Helt-202;Helt-203,Helt;Helt;Helt,0;-1234;-1888,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,15,22,234219,ENSMUSG00000047171,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
1071,cg17829569,-0.0000227,0.00000747,-3.038628835,0.002578831,loss,ns,-0.0000142,0.0000127,-1.117101217,0.264816093,neg,ns,-0.007148298,0.003718451,-1.922386252,0.055473364,neg,ns,1.2559155,0.000102232,0.000127877,0.799452447,0.42464024,pos,ns,0.737983128,Gm14515,Gm14515_Intergenic_upstream,X,11490190,11490239,11490190,11490191,50,-,CGTGTGTATTTGTGTAGTTGGAGTGAATAAATGTTTAAATCAGTGTGTCA,Distal Intergenic,20,11601354,11601569,216,1,Gm14515-201,-111164,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,21,28,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9991,cg25166682,-0.0000195,0.0000108,-1.801893199,0.07253362,loss,ns,-0.0000205,0.0000183,-1.117021242,0.264850232,neg,ns,0.030758119,0.005372692,5.724898526,2.44E-08,pos,ns,7.611900483,-0.000230419,0.000184766,-1.247084731,0.21330779,neg,ns,0.881699662,Eif3h,Eif3h_Intron,15,51798494,51798543,51798542,51798543,50,+,ATAAGATTGATCGTATTCATTAGTATTTTTTCTGACAGATACTCAGGACG,"Intron (Eif3h-201/Eif3h, intron 3 of 7)",15,51786558,51865523,78966,2,Eif3h-201,66980,Eif3h-201;Eif3h-204;Eif3h-203,Eif3h;Eif3h;Eif3h,0;0;66911,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,3,68135,ENSMUSG00000022312,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3130,cg10784597,-0.0000251,0.00000988,-2.54504852,0.01141064,loss,ns,0.0000187,0.0000168,1.117013441,0.264853563,pos,ns,0.016808406,0.004916462,3.418800921,0.000713093,pos,ns,3.146854065,-0.00080079,0.000169077,-4.736253499,0.00000332,neg,ns,0.669514221,Nol4,Nol4_Exon,18,22912617,22912666,22912665,22912666,50,-,ATTCTTTCTTCAAGATTGGAGCTAAGATCAGAGTTCACAGCTGACATCCG,"Exon (Nol4-202/Nol4, exon 5 of 11)",18,22693381,23038656,345276,2,Nol4-202,125990,Nol4-202;Nol4-204;Nol4-208;Nol4-206;Nol4-209,Nol4;Nol4;Nol4;Nol4;Nol4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,16,21,319211,ENSMUSG00000041923,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2974,cg08339603,-0.0000153,0.00000516,-2.971763872,0.003192727,loss,ns,0.00000979,0.00000877,1.116993151,0.264862224,pos,ns,-0.000856213,0.002568683,-0.333327588,0.739112351,neg,ns,0.131289541,0.000146166,0.0000883,1.654640062,0.099009597,pos,ns,0.893445665,Lrmda,Lrmda_Intron,14,22198702,22198751,22198702,22198703,50,-,CGAAGTAATATACTGTTAGGAAAACAATCATGCAAGTTGTCAAGGAAAGA,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,178990,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206,Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15259,cg18522382,-0.0000045,0.00000411,-1.096640261,0.273649833,loss,ns,0.00000779,0.00000698,1.116868842,0.264915296,pos,ns,0.005751816,0.002044568,2.813218374,0.005217997,pos,ns,2.28249621,-0.00018592,0.0000703,-2.644188138,0.008605464,neg,ns,0.896245095,Suz12,Suz12_threeUTR,11,80031966,80032015,80032014,80032015,50,-,TTTAATCTTATTAGCATAATGTCAATAGATAAAGCTGTTACCAAGCTCCG,3' UTR,11,79993106,80034122,41017,1,Suz12-206,38860,Suz12-206;Suz12-201;Suz12-204,Suz12;Suz12;Suz12,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,2,52615,ENSMUSG00000017548,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20932,cg23403969,-0.00000188,0.000000589,-3.183551438,0.001602546,loss,ns,0.00000112,0.000001,1.116760292,0.264961646,pos,ns,0.001341402,0.000293148,4.575848088,0.00000687,pos,ns,5.163043414,-0.000029,0.0000101,-2.878496338,0.004273485,neg,ns,0.980777133,Elp4,Elp4_Intron,2,105720218,105720267,105720266,105720267,50,+,ACCAGCCTTTAATTGTGTTTGTCCACCTAGGTATAAAATAGACATTATCG,"Intron (Elp4-202/Elp4, intron 9 of 9)",2,105701027,105904564,203538,2,Elp4-202,184297,Elp4-202,Elp4,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,16,77766,ENSMUSG00000027167,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25305,cg22937371,-0.0000113,0.00000376,-2.996408164,0.002952376,loss,ns,-0.00000714,0.00000639,-1.116548327,0.265052169,neg,ns,-0.006305637,0.001873414,-3.365853409,0.000859102,neg,ns,3.065955174,0.000112738,0.0000644,1.74986886,0.08113037,pos,ns,0.905228149,Kdm5b,Kdm5b_Exon,1,134630681,134630730,134630681,134630682,50,+,CGAACAGGAAGACTCTGAGGATGAAGATGCCATCTGCCCAGCTGTGAGCT,"Exon (Kdm5b-201/Kdm5b, exon 26 of 27)",1,134560171,134635285,75115,1,Kdm5b-201,70510,Kdm5b-201;Kdm5b-203;Kdm5b-206,Kdm5b;Kdm5b;Kdm5b,0;0;7881,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,4,75605,ENSMUSG00000042207,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20467,cg08927001,0.0000588,0.00000588,10.00419459,1.33E-20,gain,yes,-0.0000111,0.00000998,-1.116512682,0.265067395,neg,ns,0.00836217,0.002925005,2.858856837,0.004539813,pos,ns,2.342962072,-0.000106767,0.000100591,-1.061395603,0.289336345,neg,ns,0.039952734,Hoxc4,Hoxc4_Intergenic_downstream,15,103061680,103061729,103061680,103061681,50,+,CGCCTTTGTATGCGTGATTTATGACTTCAATCTTGGTTCACCAAGAGTTC,Distal Intergenic,15,103034395,103036852,2458,1,Hoxc4-201,27285,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,32,91,15423,ENSMUSG00000075394,mapped to different genes,15,103061537,103061809,273,*,273,19,0.586080586,0.8125,0.06959707,7.69E-12,CpGisland,TRUE,U13,Hc-P
15491,cg07843244,0.0000145,0.00000649,2.238239707,0.025915168,gain,ns,-0.0000123,0.000011,-1.116493009,0.265075798,neg,ns,0.001394934,0.003230811,0.431759836,0.666216106,pos,ns,0.176384872,-0.000117781,0.000111107,-1.060066716,0.289939474,neg,ns,0.8963572,Gm7503,Gm7503_Intergenic_upstream,18,81153749,81153798,81153749,81153750,50,-,CGTAATGTTCTTTGCACGGCTCGGTGGCTAACGTACAATAAATCAACAAA,Distal Intergenic,18,80997003,80997383,381,2,Gm7503-201,-156415,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,17,21,665124,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27317,cg22698468,-0.00000153,0.00000143,-1.07121656,0.28490534,loss,ns,-0.0000027,0.00000242,-1.116380784,0.265123737,neg,ns,-0.0000165,0.000709463,-0.023319882,0.981410116,neg,ns,0.00814947,-0.00000346,0.0000244,-0.141798704,0.887331115,neg,ns,0.970667422,Zswim3,Zswim3_Exon,2,164819737,164819786,164819785,164819786,50,+,GTTACCTCTACCTTCCCTAGGTATGTGCAGGTGAAATTTGTCTGCATTCG,"Exon (Zswim3-201/Zswim3, exon 2 of 2)",2,164805098,164822130,17033,1,Zswim3-201,14639,Zswim1-201;Zswim1-202;Zswim3-201,Zswim1;Zswim1;Zswim3,-2900;-3227;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,67538,ENSMUSG00000045822,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11930,cg26667141,0.0000297,0.00000541,5.483124207,8.68E-08,gain,yes,-0.0000103,0.00000919,-1.116358773,0.26513314,neg,ns,0.000128808,0.002692155,0.047845762,0.961869975,pos,ns,0.016883632,0.000124073,0.0000926,1.340123432,0.181186626,pos,ns,0.883255504,Gm13626,Gm13626_Intergenic_downstream,2,61686155,61686204,61686155,61686156,50,+,CGGTTTGTGGTTCTTTGTTTGAATACTTTAAAAATGGGCACCCTGGTAAG,Distal Intergenic,2,61706893,61707591,699,2,Gm13626-201,21387,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,8,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22891,cg25381383,0.00014354,0.0000125,11.46178805,1.36E-25,gain,yes,0.0000237,0.0000213,1.115992825,0.265289508,pos,ns,0.002053683,0.006233007,0.32948513,0.742011541,pos,ns,0.12958934,0.000134907,0.000214353,0.629369778,0.529570534,pos,ns,0.318461109,Meis2,Meis2_Promoter,2,116067874,116067923,116067922,116067923,50,-,AGCAATTAAACAGTTTGATTAAATGAGCCATCATAACAATGATGTCTGCG,Promoter (2-3kb),2,115863064,116065839,202776,2,Meis2-205,-2084,Meis2-201;Meis2-203;Meis2-205;Meis2-206;Meis2-204;Meis2-202;Meis2-209,Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,6,97,17536,ENSMUSG00000027210,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26235,cg19656972,-0.00000536,0.00000195,-2.746532477,0.006374965,loss,ns,-0.0000037,0.00000332,-1.115800945,0.265371523,neg,ns,-0.001821367,0.000971404,-1.874983622,0.061734978,neg,ns,1.209468703,-0.0000121,0.0000334,-0.362387723,0.717309238,neg,ns,0.037867599,Dhrs3,Dhrs3_fiveUTR,4,144892829,144892878,144892877,144892878,50,-,TAAGCAATTTCCTGAGCCCAAGAATAGCAATGAGTCGGGAGACTTTCGCG,Promoter (<=1kb),4,144892827,144927642,34816,1,Dhrs3-202,2,Dhrs3-202;Dhrs3-207;Dhrs3-206;Dhrs3-203;Dhrs3-205;Dhrs3-201,Dhrs3;Dhrs3;Dhrs3;Dhrs3;Dhrs3;Dhrs3,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,5,20148,ENSMUSG00000066026,conserved gene and region,4,144892683,144892878,196,*,196,18,0.62244898,0.954545455,0.091836735,2.31E-13,CpGisland,TRUE,U1,Pr-A
21088,cg22087514,-0.0000468,0.00000748,-6.263413846,1.26E-09,loss,yes,-0.0000142,0.0000127,-1.115732385,0.265400832,neg,ns,0.029681534,0.00372073,7.977341647,2.92E-14,pos,yes,13.53510461,-0.000877094,0.000127956,-6.85467299,3.87E-11,neg,yes,0.878371565,Ern1,Ern1_Exon,11,106407111,106407160,106407111,106407112,50,+,CGGCGGCTGAAACTGTGTCTGCCCACTGCCAGCTTCTTGCAGAGGCCAAA,"Exon (Ern1-201/Ern1, exon 17 of 22)",11,106394650,106487796,93147,2,Ern1-201,80636,Ern1-201;Ern1-205,Ern1;Ern1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,78943,ENSMUSG00000020715,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19631,cg05260361,-0.0000324,0.00000952,-3.407241186,0.000742839,loss,ns,0.000018,0.0000162,1.115511325,0.265495348,pos,ns,0.00377174,0.004737844,0.796087964,0.426590102,pos,ns,0.369989226,-0.000443713,0.000162934,-2.723266517,0.006830256,neg,ns,0.823262649,Gm28267,Gm28267_Intergenic_upstream,9,100194457,100194506,100194505,100194506,50,-,TTGTCTGATATTAAATTGTTACCACTTTATCATTTGTGTAGAACTGCACG,Distal Intergenic,9,100404495,100404759,265,1,Gm28267-201,-210038,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,29,29,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4573,cg26035806,-0.00000252,0.00000261,-0.965117672,0.335238154,loss,ns,-0.00000495,0.00000444,-1.11550911,0.265496295,neg,ns,-0.002315784,0.001300977,-1.780033831,0.076049865,neg,ns,1.118901555,-0.0000195,0.0000447,-0.434754403,0.664043187,neg,ns,0.942042369,Myt1l,Myt1l_Exon,12,29827807,29827856,29827855,29827856,50,+,AGCCATGTCAAAAAGCCATACTATGGTAAAGGTAATATTTCTACCTAACG,"Exon (Myt1l-205/Myt1l, exon 10 of 25)",12,29528384,29920539,392156,1,Myt1l-205,299423,Myt1l-205;Myt1l-202;Myt1l-201,Myt1l;Myt1l;Myt1l,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,4,17933,ENSMUSG00000061911,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25067,cg15378605,0.00000461,0.00000641,0.719167831,0.472579283,gain,ns,-0.0000122,0.0000109,-1.115480125,0.26550869,neg,ns,-0.00322594,0.003191688,-1.010731612,0.312933143,neg,ns,0.504548438,-0.000204149,0.000109762,-1.859928622,0.063842644,neg,ns,0.662330086,Chst15,Chst15_Exon,7,132270366,132270415,132270414,132270415,50,-,GTCCTCACTTCGAGAACAGCAAGCAAGTTCATCTGCTTACTGTCCACACG,"Exon (Chst15-201/Chst15, exon 2 of 8)",7,132235780,132316714,80935,2,Chst15-201,46299,Chst15-201;Chst15-202;Chst15-203;Fgfr2-217,Chst15;Chst15;Chst15;Fgfr2,0;0;8210;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,77590,ENSMUSG00000030930,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15765,cg14062531,0.0000817,0.00000972,8.4024362,1.60E-15,gain,yes,-0.0000184,0.0000165,-1.11546099,0.265516872,neg,ns,-0.006931126,0.004840133,-1.432011416,0.153148045,neg,ns,0.814888542,0.000438773,0.000166452,2.636036142,0.008810222,pos,ns,0.506969327,Slc4a5,Slc4a5_Intron,6,83244806,83244855,83244854,83244855,50,-,GAGTGAAAATCTCAAATCCGCAAGGAATTTTCCCTGGCAGTGCTTTGTCG,"Intron (Slc4a5-203/Slc4a5, intron 4 of 26)",6,83219828,83303476,83649,1,Slc4a5-203,24978,Slc4a5-203;Slc4a5-204;Slc4a5-201;Slc4a5-202,Slc4a5;Slc4a5;Slc4a5;Slc4a5,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,2,232156,ENSMUSG00000068323,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17983,cg03316431,0.000000427,0.00000158,0.270760724,0.786755257,gain,ns,0.00000298,0.00000268,1.11538947,0.265547459,pos,ns,0.001239692,0.000784016,1.581208333,0.114850127,pos,ns,0.939868522,-0.0000529,0.000027,-1.961774648,0.050683291,neg,ns,0.95716042,Car10,Car10_Intron,11,93140194,93140243,93140242,93140243,50,+,TGCACTTACAAGTATAATCTGCATCACAATGAAATATTTGGATGTAAGCG,"Intron (Car10-204/Car10, intron 2 of 4)",11,93098404,93368999,270596,1,Car10-204,41790,Car10-204;Car10-205;Car10-201;Car10-203;Car10-202;Car10-206,Car10;Car10;Car10;Car10;Car10;Car10,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,7,72605,ENSMUSG00000056158,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15649,cg00608633,-0.000215689,0.0000195,-11.0658383,3.29E-24,loss,yes,-0.0000369,0.0000331,-1.115328208,0.265573659,neg,ns,0.058804791,0.009701083,6.061672834,3.91E-09,pos,ns,8.408024408,-0.001552289,0.000333619,-4.652873921,0.00000486,neg,ns,0.766066265,Nfib,Nfib_Exon,4,82498678,82498727,82498726,82498727,50,-,TACTTGCGTTTTCGAGCCTGCAGGTTGAACCAAGTATAGGCAATTGCACG,"Exon (Nfib-201/Nfib, exon 2 of 12)",4,82290173,82505308,215136,2,Nfib-201,6581,Nfib-201;Nfib-203;Nfib-202;Nfib-205;Nfib-206;Nfib-204;Nfib-207;Nfib-209;Nfib-210;Nfib-208;Nfib-212;Nfib-211,Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,14,66,18028,ENSMUSG00000008575,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19273,cg11630053,-0.0000013,0.00000229,-0.565251549,0.572311526,loss,ns,0.00000434,0.00000389,1.115144544,0.26565222,pos,ns,0.00116335,0.001141068,1.019527246,0.308747715,pos,ns,0.510396248,-0.0000369,0.0000392,-0.939378271,0.348267915,neg,ns,0.08921712,Eml5,Eml5_Exon,12,98900922,98900971,98900970,98900971,50,-,ATCTCCTTGGCCGCAGTGTAGTAGAGGTTGTTGCGGCACTGGTGGCCCCG,Promoter (<=1kb),12,98786805,98901172,114368,2,Eml5-201,201,Eml5-201;Eml5-210,Eml5;Eml5,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,319670,ENSMUSG00000051166,conserved gene and region,12,98900503,98901282,780,*,780,86,0.662820513,1.005847953,0.11025641,2.83E-69,CpGisland,TRUE,U3,Pr-B
15217,cg18845660,0.00000455,0.00000164,2.784199081,0.005695775,gain,ns,-0.0000031,0.00000278,-1.115055361,0.265690374,neg,ns,0.002425132,0.000814236,2.978414115,0.003126162,pos,ns,2.504988532,-0.0000145,0.000028,-0.517634359,0.605082584,neg,ns,0.952686247,Rad51b,Rad51b_Intron,12,79707847,79707896,79707895,79707896,50,+,TTTCCGTTTGTTATGTCTGAGCTGAACTAGACTATTAGGGCTTGTTAACG,"Intron (Rad51b-202/Rad51b, intron 8 of 10)",12,79297282,79814690,517409,1,Rad51b-202,410565,Rad51b-202;Rad51b-203,Rad51b;Rad51b,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,6,19363,ENSMUSG00000059060,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16416,cg23503691,-0.00000145,0.00000151,-0.960260105,0.337672684,loss,ns,-0.00000285,0.00000256,-1.115040989,0.265696522,neg,ns,-0.001149205,0.000749675,-1.53293724,0.126311195,neg,ns,0.898558156,0.000058,0.0000258,2.250392204,0.025124861,pos,ns,0.960492873,Ric8b,Ric8b_Exon,10,84947826,84947875,84947826,84947827,50,-,CGCTATGAGCTCCAGGGACTACCGCTGCTAACGCAGATCTTGGAAAGTGC,"Exon (Ric8b-201/Ric8b, exon 3 of 10)",10,84917616,85016447,98832,1,Ric8b-201,30210,Ric8b-201;Ric8b-203;Ric8b-202;Ric8b-205,Ric8b;Ric8b;Ric8b;Ric8b,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,14,237422,ENSMUSG00000035620,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3404,cg23753196,0.00011986,0.0000135,8.870899041,5.88E-17,gain,yes,-0.0000256,0.000023,-1.115016382,0.26570705,neg,ns,0.012957064,0.006724866,1.926739174,0.054926022,pos,ns,1.260221857,-0.000521956,0.000231268,-2.256934619,0.024708136,neg,ns,0.079287904,Kcnma1,Kcnma1_Exon,14,24004009,24004058,24004009,24004010,50,-,CGCGTCTAGGCTGAGATGGTTCGCGTGGATATTGCTACTCATTCTAAGAC,Promoter (<=1kb),14,23292291,24004859,712569,2,Kcnma1-205,801,Kcnma1-205;Kcnma1-212;Kcnma1-211;Kcnma1-229;Kcnma1-234;Kcnma1-223;Kcnma1-214;Kcnma1-216;Kcnma1-219;Kcnma1-220;Kcnma1-224;Kcnma1-233;Kcnma1-236;Kcnma1-237;Kcnma1-213;Kcnma1-228;Kcnma1-221;Kcnma1-225;Kcnma1-226;Kcnma1-230;Kcnma1-235;Kcnma1-238;Kcnma1-215,Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,16,41,16531,ENSMUSG00000063142,conserved gene and region,14,24004009,24005040,1032,*,1032,138,0.754844961,0.943439723,0.13372093,5.00E-124,CpGisland,TRUE,U3,Pr-B
10249,cg11636735,0.00000133,0.00000257,0.516661328,0.605760975,gain,ns,-0.00000487,0.00000436,-1.11485794,0.265774845,neg,ns,-0.000936685,0.001278619,-0.732575303,0.464371027,neg,ns,0.333134885,0.0000411,0.000044,0.935457923,0.350280485,pos,ns,0.95454109,Neb,Neb_Exon,2,52271495,52271544,52271495,52271496,50,+,CGATCAGATTGCATCTTAGCCACTTGCATGGAATGGACTAATTTGGGATC,"Exon (Neb-202/Neb, exon 49 of 157)",2,52136647,52338798,202152,2,Neb-202,67254,Neb-202;Neb-203;Neb-213;Neb-214,Neb;Neb;Neb;Neb,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,8,17996,ENSMUSG00000026950,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15745,cg03340286,0.00000698,0.00000518,1.347367134,0.178845983,gain,ns,-0.00000981,0.0000088,-1.114680684,0.265850705,neg,ns,-0.000990501,0.002578629,-0.38411917,0.701153464,neg,ns,0.154186916,-0.00000248,0.0000887,-0.027985976,0.977691344,neg,ns,0.776721504,Zfp516,Zfp516_Intergenic_downstream,18,83122909,83122958,83122909,83122910,50,+,CGGCATGGCCTTGCTTGTTCAGACTGATCCTTGATGCATAGGCTCAGAGG,Distal Intergenic,18,82987808,83001700,13893,1,Zfp516-205,135101,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,6,329003,ENSMUSG00000058881,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14079,cg23998570,0.0000178,0.000017,1.048099262,0.295409332,gain,ns,0.0000321,0.0000288,1.114522588,0.265918377,pos,ns,-0.002894714,0.008444166,-0.342806322,0.731976502,neg,ns,0.13550286,0.000485393,0.000290394,1.671498242,0.095632383,pos,ns,0.226799765,Evx2,Evx2_Intergenic_downstream,2,74651371,74651420,74651371,74651372,50,-,CGTTGATCAGATAATCAATGTCAAAGATGCGATGAATGTCAGTAAATGTA,Distal Intergenic,2,74655616,74659419,3804,2,Evx2-202,8048,Evx2-201;Evx2-202,Evx2;Evx2,0;7999,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,35,14029,ENSMUSG00000001815,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
13158,cg17942018,-0.00000211,0.00000126,-1.67005331,0.095918168,loss,ns,0.00000239,0.00000215,1.114492769,0.265931143,pos,ns,0.000859512,0.000629379,1.36565181,0.173038315,pos,ns,0.761857724,-0.0000261,0.0000216,-1.206848176,0.228410722,neg,ns,0.038842475,Tcf4,Tcf4_Intron,18,69592845,69592894,69592893,69592894,50,-,GATGGCAGAGTTATTAGATGTGCATCATACGATTCCCTTCCTGCCACTCG,"Intron (Tcf4-201/Tcf4, intron 9 of 20)",18,69344146,69684343,340198,1,Tcf4-201,248699,Tcf4-201;Tcf4-207;Tcf4-240;Tcf4-254;Tcf4-246;Tcf4-206;Tcf4-202;Tcf4-257;Tcf4-232;Tcf4-248;Tcf4-231;Tcf4-205;Tcf4-253;Tcf4-238;Tcf4-249;Tcf4-219;Tcf4-227;Tcf4-250;Tcf4-229;Tcf4-260;Tcf4-226;Tcf4-216;Tcf4-256;Tcf4-230;Tcf4-221;Tcf4-234;Tcf4-258;Tcf4-217;Tcf4-247;Tcf4-252;Tcf4-218;Tcf4-243;Tcf4-237;Tcf4-239;Tcf4-262;Tcf4-223;Tcf4-212;Tcf4-204;Tcf4-225;Tcf4-222;Tcf4-261;Tcf4-255;Tcf4-203;Tcf4-241;Tcf4-236;Tcf4-228;Tcf4-220;Tcf4-242,Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,42,66,21413,ENSMUSG00000053477,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
7139,cg16728040,-0.0000153,0.00000806,-1.900581618,0.058284292,loss,ns,0.0000153,0.0000137,1.114449489,0.265949671,pos,ns,-0.004193254,0.004012787,-1.044972975,0.296849602,neg,ns,0.527463529,0.0000397,0.000137999,0.287823055,0.773674512,pos,ns,0.837922315,Gm4754,Gm4754_Intergenic_downstream,5,41380742,41380791,41380790,41380791,50,+,TCATGGGTCTTAAATTTCTTTTTAATCACAGGCTTTAGTATTATTACACG,Distal Intergenic,5,41342123,41342931,809,1,Gm4754-201,38619,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,2,208522,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5697,cg11025918,0.0000196,0.00000884,2.221242928,0.027056696,gain,ns,-0.0000167,0.000015,-1.11443756,0.265954778,neg,ns,0.011407465,0.004401213,2.591890885,0.009996889,pos,ns,2.000135116,-0.000426804,0.000151357,-2.819842866,0.005114163,neg,ns,0.460815046,Notch4,Notch4_threeUTR,17,34586101,34586150,34586101,34586102,50,+,CGCTGCCCGCCGCCTCCTTGAGGCTGGAGCCAACCCCAACCAGCCAGACC,3' UTR,17,34564268,34588503,24236,1,Notch4-201,21833,Gpsm3-201;Gpsm3-202;Gpsm3-203;Notch4-201;Notch4-211;Notch4-212;Notch4-207;Notch4-208;Notch4-204;Notch4-206;Notch4-205;Notch4-202;Notch4-210,Gpsm3;Gpsm3;Gpsm3;Notch4;Notch4;Notch4;Notch4;Notch4;Notch4;Notch4;Notch4;Notch4;Notch4,-3656;-3942;-4081;0;0;8093;0;0;1533;0;-125;-795;-891,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,18132,ENSMUSG00000015468,mapped to different genes,17,34586064,34586249,186,*,186,14,0.650537634,0.722530522,0.075268817,2.66E-09,CpGisland,TRUE,U11,Tr-P
15521,cg25048905,0.000000266,0.00000655,0.040669713,0.967585387,gain,ns,0.0000124,0.0000111,1.114423511,0.265960793,pos,ns,0.006845385,0.00325991,2.099869418,0.036548287,pos,ns,1.437132971,-0.00021775,0.000112108,-1.942321862,0.05300359,neg,ns,0.888663586,Adgrv1,Adgrv1_Exon,13,81523708,81523757,81523708,81523709,50,+,CGAATTATTGGCAGGTTTACCTTCACTGAGTTAAACTCAGGTTCCTCTAC,"Exon (Adgrv1-201/Adgrv1, exon 31 of 90)",13,81095068,81633154,538087,2,Adgrv1-201,109397,Adgrv1-201;Adgrv1-202;Adgrv1-208;Adgrv1-212,Adgrv1;Adgrv1;Adgrv1;Adgrv1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,5,110789,ENSMUSG00000069170,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21212,cg17860780,-0.00000972,0.00000419,-2.321504485,0.02090766,loss,ns,-0.00000793,0.00000711,-1.114311449,0.266008773,neg,ns,0.00220078,0.002083948,1.056062671,0.29176189,pos,ns,0.534971437,-0.000123916,0.0000717,-1.729063234,0.084793323,neg,ns,0.915366181,Ddx5,Ddx5_threeUTR,11,106782730,106782779,106782730,106782731,50,-,CGGAGTTTTGCACACCACAACAGCCAGACCAAAAATAAAAAGTTAGACAA,3' UTR,11,106780355,106788532,8178,2,Ddx5-201,5753,Ddx5-201;Ddx5-208;Ddx5-205;Ddx5-207;Ddx5-203;Ddx5-202;Ddx5-209;Ddx5-206;Ddx5-204;Polg2-201;Polg2-203;Polg2-206;Polg2-204;Polg2-202,Ddx5;Ddx5;Ddx5;Ddx5;Ddx5;Ddx5;Ddx5;Ddx5;Ddx5;Polg2;Polg2;Polg2;Polg2;Polg2,0;0;0;0;0;0;3271;0;0;-3215;-3193;-3257;-3257;-3228,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,5,6,13207,ENSMUSG00000020719,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2891,cg01459514,-0.000000114,0.000000514,-0.221579739,0.824786945,loss,ns,-0.000000973,0.000000873,-1.114060754,0.266116132,neg,ns,-0.00036095,0.000255775,-1.411200834,0.159188207,neg,ns,0.798089109,0.00000725,0.0000088,0.824716206,0.410166855,pos,ns,0.991903952,Elavl3,Elavl3_Exon,9,22018824,22018873,22018872,22018873,50,+,CGGCGAGAACCTGGCGATGAGCGACAGGGGACTACTTTGGGGGTCACGCG,"Exon (Elavl3-201/Elavl3, exon 7 of 7)",9,22015005,22052010,37006,2,Elavl3-201,33137,Elavl3-201;Elavl3-202;Elavl3-203;Prkcsh-205;Prkcsh-201;Prkcsh-202,Elavl3;Elavl3;Elavl3;Prkcsh;Prkcsh;Prkcsh,0;0;33150;16018;15806;15758,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,5,15571,ENSMUSG00000003410,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9085,cg11975654,0.0000809,0.00000826,9.795084939,6.51E-20,gain,yes,-0.0000156,0.000014,-1.114003486,0.266140661,neg,ns,0.007794787,0.004109234,1.896895604,0.058771027,pos,ns,1.230836717,-0.000178569,0.000141316,-1.263615954,0.207317331,neg,ns,0.076988108,Nova1,Nova1_fiveUTR,12,46818719,46818768,46818767,46818768,50,-,CCCGTTCTGCTGGATGGGAGCTGCCGCCATCATGTTTGCAGTTCCTGCCG,Promoter (<=1kb),12,46694517,46818929,124413,2,Nova1-201,161,Nova1-201;Nova1-203;Nova1-202;Nova1-205,Nova1;Nova1;Nova1;Nova1,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,24,664883,ENSMUSG00000021047,conserved gene and region,12,46818385,46818823,439,*,439,48,0.69476082,0.92114006,0.109339408,9.96E-39,CpGisland,TRUE,U3,Pr-B
18777,cg22001782,0.000000809,0.0000023,0.351592426,0.725382804,gain,ns,-0.00000435,0.00000391,-1.113893107,0.266187942,neg,ns,-0.001341023,0.001144564,-1.171645066,0.242239293,neg,ns,0.615755409,0.0000298,0.0000394,0.757556439,0.449292015,pos,ns,0.054839675,Bcl9,Bcl9_Promoter,3,97297962,97298011,97297962,97297963,50,+,CGGTGACACTTGGTACGGCCCAGGCATTCATGCCAAGTAGCTTTCACACA,Promoter (<=1kb),3,97216553,97297917,81365,2,Bcl9-208,-45,Bcl9-208,Bcl9,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,10,77578,ENSMUSG00000038256,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
996,cg12172899,-0.000000466,0.00000443,-0.105204899,0.916281262,loss,ns,-0.00000838,0.00000752,-1.113797759,0.26622879,neg,ns,-0.002830358,0.002203474,-1.284497841,0.199926859,neg,ns,0.699128856,-0.00000606,0.0000758,-0.079997139,0.936291149,neg,ns,0.918298897,Syt7,Syt7_threeUTR,19,10430379,10430428,10430379,10430380,50,-,CGGAACAGGATGACTTTGCCAATATCCCTGACCTGCAAAACCCAGGAACC,3' UTR,19,10389090,10448444,59355,1,Syt7-201,41289,Syt7-201;Syt7-208;Syt7-203;Syt7-202;Syt7-210;Syt7-211;Syt7-204;Syt7-205;Syt7-207;Syt7-209;Syt7-213;Syt7-214;Syt7-215;Syt7-212,Syt7;Syt7;Syt7;Syt7;Syt7;Syt7;Syt7;Syt7;Syt7;Syt7;Syt7;Syt7;Syt7;Syt7,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,9,10,54525,ENSMUSG00000024743,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19928,cg03222030,0.0000012,0.00000188,0.636812781,0.524716761,gain,ns,0.00000355,0.00000319,1.113608382,0.266309933,pos,ns,0.003469908,0.000934587,3.712770655,0.000243013,pos,ns,3.614369895,-0.0000782,0.0000321,-2.433296189,0.015527046,neg,ns,0.956843874,Ogt,Ogt_Intron,X,101654628,101654677,101654676,101654677,50,+,GGTTGGCCGTTTGCTGCGTCTAGGGGTGTTCTATGTAGCGCAGCAGTTCG,"Intron (Ogt-202/Ogt, intron 5 of 22)",20,101640060,101682940,42881,1,Ogt-202,14568,Ogt-202;Ogt-206;Ogt-201;Ogt-205;Ogt-204;Ogt-207;Ogt-203,Ogt;Ogt;Ogt;Ogt;Ogt;Ogt;Ogt,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,33,108155,ENSMUSG00000034160,conserved gene but different region,X,101654635,101654726,92,*,92,10,0.586956522,1.352941177,0.108695652,2.73E-08,CpGisland,TRUE,U10,Tr-S
5952,cg21834803,0.000026,0.000011,2.35532769,0.01912919,gain,ns,-0.0000209,0.0000187,-1.113540042,0.266339219,neg,ns,0.01138226,0.005486921,2.074434987,0.038863907,pos,ns,1.410453543,-0.000315415,0.000188695,-1.671564046,0.095619385,neg,ns,0.417454795,Slit3,Slit3_Exon,11,35544736,35544785,35544784,35544785,50,+,GACAACAACCACATCAGCTGCATTGAAGATGGAGCCTTCCGAGCGCTGCG,"Exon (Slit3-201/Slit3, exon 6 of 36)",11,35121224,35708507,587284,1,Slit3-201,423512,Slit3-201;Slit3-202,Slit3;Slit3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,21,20564,ENSMUSG00000056427,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
11827,cg26937431,0.000000215,0.00000939,0.022925527,0.981724427,gain,ns,0.0000178,0.0000159,1.113481531,0.266364295,pos,ns,-0.004930355,0.004671574,-1.055394673,0.292066676,neg,ns,0.534517992,-0.00000791,0.000160655,-0.049246779,0.960754346,neg,ns,0.136704456,Camk2a,Camk2a_Exon,18,60977967,60978016,60978015,60978016,50,+,CAGAGCAGCTGATTGAAGCCATAAGCAATGGAGATTTTGAGTCCTACACG,"Exon (Camk2a-203/Camk2a, exon 15 of 18)",18,60925618,60988152,62535,1,Camk2a-203,52349,Camk2a-203;Camk2a-201;Camk2a-204;Camk2a-202,Camk2a;Camk2a;Camk2a;Camk2a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,7,12322,ENSMUSG00000024617,conserved gene and region,18,60977708,60978077,370,*,370,18,0.554054054,0.635132558,0.048648649,1.01E-08,CpGisland,TRUE,NA,NRS
7474,cg15735049,0.000108972,0.0000155,7.046336619,1.19E-11,gain,yes,-0.0000293,0.0000263,-1.113349701,0.266420799,neg,ns,0.027003716,0.007697117,3.508289571,0.000517743,pos,ns,3.285885582,-0.000564159,0.000264703,-2.131287107,0.033851903,neg,ns,0.442967806,Ppp2r2b,Ppp2r2b_Exon,18,42737999,42738048,42738047,42738048,50,-,TCGGGTTCATGGCTCTGGAATGTGCTGTAAACATTGTATTCACCCCTACG,"Exon (Ppp2r2b-204/Ppp2r2b, exon 3 of 9)",18,42637432,42899503,262072,2,Ppp2r2b-204,161455,Ppp2r2b-204;Ppp2r2b-202;Ppp2r2b-201;Ppp2r2b-203;Ppp2r2b-208;Ppp2r2b-207;Ppp2r2b-205,Ppp2r2b;Ppp2r2b;Ppp2r2b;Ppp2r2b;Ppp2r2b;Ppp2r2b;Ppp2r2b,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,15,72930,ENSMUSG00000024500,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16374,cg18171879,-0.0000379,0.00000981,-3.859895187,0.000138056,loss,ns,-0.0000185,0.0000167,-1.11329048,0.266446184,neg,ns,0.003733533,0.00488059,0.76497571,0.444867964,pos,ns,0.351768867,-0.0000103,0.000167843,-0.061504941,0.950996714,neg,ns,0.84982404,Nfix,Nfix_Intron,8,84780086,84780135,84780086,84780087,50,+,CGACAGACCCAACGTCCTAACGAACTTGAGTTAATTAATGCTAAGGAAGA,"Intron (Nfix-201/Nfix, intron 1 of 8)",8,84708614,84800140,91527,2,Nfix-201,20005,Nfix-201;Nfix-202;Nfix-205,Nfix;Nfix;Nfix,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,49,18032,ENSMUSG00000001911,conserved gene and region,8,84779926,84780165,240,*,240,13,0.554166667,0.771895101,0.054166667,0.000000544,CpGisland,TRUE,U13,Hc-P
12557,cg17217351,0.00000178,0.0000029,0.614115514,0.539589407,gain,ns,-0.00000549,0.00000493,-1.112847486,0.26663613,neg,ns,-0.0000166,0.00144429,-0.011460888,0.990863106,neg,ns,0.003986342,-0.00010442,0.0000497,-2.102316877,0.036331826,neg,ns,0.924689704,Nedd4l,Nedd4l_Exon,18,65172344,65172393,65172392,65172393,50,-,GGGCGCACATACTATGTCAATCATAACAATCGAACCACAACTTGGACTCG,"Exon (Nedd4l-215/Nedd4l, exon 14 of 31)",18,64887705,65213404,325700,1,Nedd4l-215,284639,Nedd4l-215;Nedd4l-221;Nedd4l-223;Nedd4l-218;Nedd4l-202;Nedd4l-228;Nedd4l-225;Nedd4l-229;Nedd4l-201;Nedd4l-233;Nedd4l-208;Nedd4l-211;Nedd4l-220;Nedd4l-204;Nedd4l-207;Nedd4l-217;Nedd4l-231,Nedd4l;Nedd4l;Nedd4l;Nedd4l;Nedd4l;Nedd4l;Nedd4l;Nedd4l;Nedd4l;Nedd4l;Nedd4l;Nedd4l;Nedd4l;Nedd4l;Nedd4l;Nedd4l;Nedd4l,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;-1674,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,4,83814,ENSMUSG00000024589,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22124,cg11124915,-0.000013,0.00000783,-1.666713027,0.096581453,loss,ns,-0.0000148,0.0000133,-1.112765018,0.266671501,neg,ns,0.001550187,0.003895958,0.397896261,0.690980522,pos,ns,0.160534194,-0.00017626,0.000133982,-1.315556003,0.18929523,neg,ns,0.83108994,Eif4g2,Eif4g2_Exon,7,111080903,111080952,111080951,111080952,50,-,TGCCAGCAGTCTTGGGATAGTGCTGAGGTGCACCCCTACTTCCTCCTCCG,"Exon (Eif4g2-213/Eif4g2, exon 3 of 22)",7,111067750,111083030,15281,2,Eif4g2-213,2078,Eif4g2-213;Eif4g2-206;Eif4g2-211;Eif4g2-210;Eif4g2-209;Eif4g2-203;Eif4g2-201;Eif4g2-212;Eif4g2-205,Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2,0;0;-4694;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,20,22,13690,ENSMUSG00000005610,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U4,Pr-F
21947,cg05784402,-0.0000526,0.0000213,-2.47528353,0.01384733,loss,ns,-0.0000402,0.0000361,-1.112701287,0.266698837,neg,ns,0.07361728,0.010577006,6.960124965,2.03E-11,pos,yes,10.69210905,-0.002216525,0.000363742,-6.093667652,3.27E-09,neg,yes,0.638943956,Ap1g1,Ap1g1_Exon,8,109803019,109803068,109803019,109803020,50,+,CGAGAAATGATCCAGAAAGAATGTGCTGCAATCCGGTCATCTTTTAGAGA,"Exon (Ap1g1-202/Ap1g1, exon 2 of 24)",8,109778554,109864204,85651,1,Ap1g1-202,24465,Ap1g1-202;Ap1g1-204;Ap1g1-201,Ap1g1;Ap1g1;Ap1g1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,11,16,11765,ENSMUSG00000031731,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25818,cg23213342,0.0000246,0.00000533,4.608841019,0.00000593,gain,ns,-0.0000101,0.00000906,-1.112570392,0.266754989,neg,ns,0.009166569,0.002653068,3.455082984,0.000626795,pos,ns,3.202874585,-0.00023395,0.0000912,-2.564156221,0.010813717,neg,ns,0.125163414,Uncx,Uncx_Intergenic_downstream,5,139551945,139551994,139551993,139551994,50,+,TAAATTATATACAACTAAATATCCAGCCGCCCATACCGCTGCTTAATACG,Distal Intergenic,5,139543898,139545268,1371,1,Uncx-202,8047,Uncx-201,Uncx,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,59,88,22255,ENSMUSG00000029546,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
3620,cg20402389,-0.00000029,0.00000142,-0.204316336,0.838240377,loss,ns,-0.00000268,0.00000241,-1.112489585,0.266789658,neg,ns,0.000314747,0.000706255,0.445656043,0.656156793,pos,ns,0.182992371,-0.0000256,0.0000243,-1.053833758,0.29277971,neg,ns,0.041856691,BC005537,BC005537_Exon,13,24803426,24803475,24803426,24803427,50,+,CGTGCTCAGCTTAGAAAGAAAAAAGAATCTCTAGCTGACCAGTTTGACTT,"Exon (BC005537-201/BC005537, exon 1 of 5)",13,24801657,24816197,14541,1,BC005537-201,1769,BC005537-201;BC005537-202,BC005537;BC005537,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,79555,ENSMUSG00000019132,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3359,cg10314406,-0.0000107,0.00000864,-1.244537919,0.214241734,loss,ns,0.0000163,0.0000147,1.112397949,0.266828977,pos,ns,0.000813585,0.004298222,0.189283968,0.849994128,pos,ns,0.070584075,0.000311195,0.000147816,2.105296055,0.03606982,pos,ns,0.918922685,Srrm2,Srrm2_threeUTR,17,23811843,23811892,23811843,23811844,50,-,CGGTCCCTGCCCTCTAGGAGCTGACAGGCTAAAGCAACAGGATGGACAGA,3' UTR,17,23803187,23824736,21550,1,Srrm2-210,8656,Gm49911-201;Srrm2-206;Srrm2-210;Srrm2-201;Srrm2-212;Srrm2-211;Srrm2-208;Srrm2-203;Srrm2-207,Gm49911;Srrm2;Srrm2;Srrm2;Srrm2;Srrm2;Srrm2;Srrm2;Srrm2,1608;0;0;0;0;0;0;0;-8,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,13,75956,ENSMUSG00000039218,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6121,cg06866657,0.0000324,0.00000358,9.038482273,1.76E-17,gain,yes,-0.00000676,0.00000608,-1.112183493,0.26692101,neg,ns,-0.000125707,0.001781671,-0.070555876,0.943796723,neg,ns,0.025121535,-0.0000138,0.0000613,-0.225986418,0.821360907,neg,ns,0.106547193,Lhx6,Lhx6_fiveUTR,2,36104890,36104939,36104938,36104939,50,-,CTAAATCGCTTTTTGAGAAATTCCTCCAACATTTGCATAATGTGTTCCCG,Promoter (<=1kb),2,36083687,36104891,21205,2,Lhx6-208,0,Lhx6-202;Lhx6-204;Lhx6-201;Lhx6-205;Lhx6-203;Lhx6-208;Lhx6-209;Lhx6-207,Lhx6;Lhx6;Lhx6;Lhx6;Lhx6;Lhx6;Lhx6;Lhx6,0;0;0;0;0;0;-1298;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,9,16874,ENSMUSG00000026890,conserved gene but different region,2,36104938,36105370,433,*,433,45,0.755196305,0.744270435,0.103926097,2.94E-35,CpGisland,TRUE,U3,Pr-B
7630,cg11920921,-0.0000062,0.0000045,-1.376996262,0.169506939,loss,ns,-0.00000851,0.00000765,-1.112125967,0.266945701,neg,ns,-0.001666408,0.002241909,-0.743298753,0.457863764,neg,ns,0.339263726,-0.0000633,0.0000771,-0.821384142,0.412058726,neg,ns,0.923050273,Got1,Got1_Exon,19,43504785,43504834,43504785,43504786,50,-,CGAAGTTCTTGGAGAAGGACTGGGCACAGAAGAACTCGAAGCCTTCAGAC,Promoter (<=1kb),19,43500315,43504796,4482,2,Got1-203,0,Got1-201;Got1-204;Got1-203,Got1;Got1;Got1,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,14718,ENSMUSG00000025190,conserved gene and region,19,43504539,43504856,318,*,318,15,0.581761006,0.566239316,0.047169811,0.000000332,CpGisland,TRUE,U10,Tr-S
2022,cg07692415,0.0000115,0.00000288,3.982550847,0.000085,gain,ns,-0.00000544,0.0000049,-1.112111197,0.266952041,neg,ns,0.001130151,0.001434388,0.787897396,0.431358757,pos,ns,0.365161381,-0.0000523,0.0000493,-1.060257396,0.28985288,neg,ns,0.093462472,Cav1,Cav1_fiveUTR,6,17307904,17307953,17307952,17307953,50,+,CCGGGAACAGGGCAACATCTACAAGCCCAACAACAAGGCCATGGCAGACG,5' UTR,6,17306335,17341324,34990,1,Cav1-201,1569,Cav1-201;Cav1-205;Cav1-204;Cav1-207;Cav1-210;Cav1-209;Cav1-206;Cav1-203;Cav1-202;Cav1-208,Cav1;Cav1;Cav1;Cav1;Cav1;Cav1;Cav1;Cav1;Cav1;Cav1,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,1,12389,ENSMUSG00000007655,conserved gene but different region,6,17307952,17308037,86,*,86,8,0.569767442,1.146666667,0.093023256,0.0000038,CpGisland,TRUE,NA,NRS
16753,cg13366833,-0.00000151,0.000000941,-1.605186177,0.109471028,loss,ns,0.00000178,0.0000016,1.11208213,0.266964517,pos,ns,0.000483688,0.000468304,1.032851518,0.30247848,pos,ns,0.519305518,-0.00000649,0.0000161,-0.402966975,0.687250283,neg,ns,0.029515962,Tia1,Tia1_fiveUTR,6,86404490,86404539,86404538,86404539,50,-,AGCAGCCATGGAGGACGAGATGCCCAAGACTCTGTGAGTCTGGGGCAGCG,Promoter (<=1kb),6,86404219,86431201,26983,1,Tia1-203,271,Tia1-203;Tia1-202;Tia1-224;Tia1-222;Tia1-215;Tia1-214;Tia1-218;Tia1-212;Tia1-201;Tia1-211;Tia1-221;Tia1-223;Tia1-205;Tia1-216;Tia1-206;Tia1-219;Tia1-204,Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,7,21841,ENSMUSG00000071337,mapped to different genes,6,86404091,86404743,653,*,653,58,0.653905054,0.832908163,0.088820827,4.53E-41,CpGisland,TRUE,U1,Pr-A
16660,cg02343592,0.000012,0.0000071,1.684383763,0.093114019,gain,ns,-0.0000134,0.0000121,-1.112071447,0.266969103,neg,ns,-0.001455144,0.003532562,-0.411923307,0.680680315,neg,ns,0.167056809,-0.00000396,0.000121485,-0.032629478,0.97399106,neg,ns,0.875240009,Tbx4,Tbx4_Intergenic_upstream,11,85876150,85876199,85876150,85876151,50,+,CGTATGGAGATCATTAATGCCTCCTGACACTGGGGTCACTCCCGGGGTCA,Distal Intergenic,11,85886422,85916095,29674,1,Tbx4-203,-10223,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,9,21387,ENSMUSG00000000094,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26568,cg00917676,0.0000472,0.0000102,4.644951741,0.00000503,gain,ns,-0.0000192,0.0000173,-1.112064149,0.266972236,neg,ns,0.006108418,0.005059162,1.207397164,0.228199635,pos,ns,0.641685055,-0.0000384,0.000173984,-0.220885158,0.825327265,neg,ns,0.716627315,Casz1,Casz1_Intron,4,148922116,148922165,148922116,148922117,50,-,CGAGTGAAGGATCACTGTCCGTCCCAAGGACACCCGCCATAATTAAGCGA,"Intron (Casz1-201/Casz1, intron 4 of 15)",4,148804429,148945129,140701,1,Casz1-201,117687,Casz1-201;Casz1-202;Casz1-206,Casz1;Casz1;Casz1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,94,124,69743,ENSMUSG00000028977,mapped to different genes,4,148922073,148922173,101,*,101,10,0.673267327,0.956439394,0.099009901,6.91E-08,CpGisland,TRUE,NA,NRS
25298,cg20317711,0.00000555,0.00000479,1.159475723,0.247154612,gain,ns,-0.00000905,0.00000814,-1.111954442,0.267019331,neg,ns,-0.002550913,0.002384418,-1.06982617,0.285529836,neg,ns,0.544348504,-0.0000847,0.000082,-1.033167835,0.30233069,neg,ns,0.888947482,Mtfr1l,Mtfr1l_Exon,4,134529291,134529340,134529291,134529292,50,+,CGGTGATGTCACTAATGACAAAGGAAGTTGTAGAGTGGAATGAGGATCCA,"Exon (Mtfr1l-201/Mtfr1l, exon 6 of 7)",4,134525550,134535268,9719,2,Mtfr1l-201,5928,Mtfr1l-201;Mtfr1l-202;Mtfr1l-205;Mtfr1l-204;Mtfr1l-207;Mtfr1l-206;Mtfr1l-203,Mtfr1l;Mtfr1l;Mtfr1l;Mtfr1l;Mtfr1l;Mtfr1l;Mtfr1l,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,76824,ENSMUSG00000046671,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3625,cg24865098,0.000000358,0.00000209,0.17129668,0.864102248,gain,ns,-0.00000395,0.00000355,-1.111845498,0.267066105,neg,ns,-0.000727481,0.001039805,-0.699632128,0.484681721,neg,ns,0.314543359,-0.0000151,0.0000358,-0.422939274,0.672632805,neg,ns,0.946418402,Gm47909,Gm47909_Intergenic_downstream,14,24826358,24826407,24826358,24826359,50,+,CGTCTTGCATAATTTATAAAACCTGAATGTTTCCTAATTAGTTCGGTTAG,Distal Intergenic,14,25089939,25090406,468,2,Gm47909-201,263999,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,13,17,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6629,cg26144663,0.00000186,0.00000365,0.510369399,0.6101559,gain,ns,0.0000069,0.0000062,1.111770114,0.267098473,pos,ns,0.006231243,0.001817571,3.428334782,0.0006894,pos,ns,3.16152858,-0.000203645,0.0000625,-3.2579942,0.001246528,neg,ns,0.904315679,Zfp536,Zfp536_Intergenic_upstream,7,37833610,37833659,37833610,37833611,50,+,CGTGAATATATTCTCTGCTTCAAGAAGTAATTGGTAATTACAATGGTCAT,Distal Intergenic,7,37569629,37773641,204013,2,Zfp536-208,-59969,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,112,243937,ENSMUSG00000043456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2878,cg15431157,0.0000635,0.00000445,14.27140256,7.23E-36,gain,yes,-0.00000841,0.00000756,-1.11175093,0.26710671,neg,ns,0.008121596,0.002215981,3.665011657,0.000290865,pos,ns,3.536308951,-0.0000412,0.0000762,-0.540532458,0.589218025,neg,ns,0.099210656,Otx1,Otx1_Promoter,11,22003042,22003091,22003042,22003043,50,+,CGGTAACAGAATATGATGGAGGGCACACTGTTTCCTTAACTGCTTCTCAA,Promoter (<=1kb),11,21996858,22002897,6040,2,Otx1-202,-145,Ehbp1-201;Ehbp1-202;Ehbp1-207;Otx1-201;Otx1-203;Otx1-202,Ehbp1;Ehbp1;Ehbp1;Otx1;Otx1;Otx1,0;0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,8,13,18423,ENSMUSG00000005917,conserved gene and region,11,22002787,22003135,349,*,349,29,0.581661891,0.986452242,0.083094556,5.69E-20,CpGisland,TRUE,U3,Pr-B
27515,cg18483752,-0.00000239,0.00000823,-0.290441935,0.771672364,loss,ns,-0.0000155,0.000014,-1.111747295,0.267108271,neg,ns,0.021542568,0.0040945,5.261342168,0.000000267,pos,ns,6.572937873,-0.000914539,0.00014081,-6.494863631,3.30E-10,neg,yes,0.412673085,Arhgap6,Arhgap6_Intron,X,168900213,168900262,168900213,168900214,50,+,CGTGAGTTTGCAAAAGTCTTGGGTAATTTGATTTGCTTATTCTCAAAATA,"Intron (Arhgap6-201/Arhgap6, intron 1 of 12)",20,168795099,169304435,509337,1,Arhgap6-201,105114,Arhgap6-201,Arhgap6,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,11856,ENSMUSG00000031355,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27866,cg07835535,-0.000042,0.00000573,-7.326469326,2.06E-12,loss,yes,0.0000108,0.00000973,1.111678356,0.267137876,pos,ns,0.006333566,0.002851776,2.220920196,0.027078787,pos,ns,1.567370795,-0.000293586,0.0000981,-2.993562317,0.002979258,neg,ns,0.880556033,Ush2a,Ush2a_Intron,1,188806279,188806328,188806279,188806280,50,-,CGCTGATTAGGGTATTAAGTAATTAGCAATTTATCACACTGGAACAAGGT,"Intron (Ush2a-201/Ush2a, intron 49 of 70)",1,188263034,188965041,702008,1,Ush2a-201,543245,Ush2a-201,Ush2a,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,33,36,22283,ENSMUSG00000026609,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5106,cg15059991,-0.00000263,0.00000171,-1.542495533,0.123973378,loss,ns,0.00000322,0.0000029,1.111500184,0.267214397,pos,ns,0.002034616,0.000849277,2.395703797,0.017181266,pos,ns,1.764944828,-0.0000545,0.0000292,-1.866459912,0.062921055,neg,ns,0.064720559,Ubxn7,Ubxn7_Intron,16,32333374,32333423,32333374,32333375,50,+,CGGAGCAAATGATGAAGTTCTCTGTGGAGTGATTTGAGAGAAGAGTACTC,"Intron (Ubxn7-202/Ubxn7, intron 1 of 1)",16,32332257,32353063,20807,1,Ubxn7-202,1117,Ubxn7-202;Ubxn7-201;Ubxn7-204;Ubxn7-203,Ubxn7;Ubxn7;Ubxn7;Ubxn7,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,3,224111,ENSMUSG00000053774,conserved gene and region,16,32333208,32333375,168,*,168,10,0.5,0.952921157,0.05952381,0.00000754,CpGisland,TRUE,U1,Pr-A
18145,cg20909915,0.0000104,0.00000285,3.664840478,0.000291051,gain,ns,-0.00000538,0.00000484,-1.111473442,0.267225884,neg,ns,0.00292104,0.001418662,2.059010513,0.040328321,pos,ns,1.394389856,-0.000066,0.0000488,-1.353513981,0.176877552,neg,ns,0.020627317,Hsd17b12,Hsd17b12_Exon,2,94241395,94241444,94241443,94241444,50,+,CTTCCGGCTATTGAGTTATGTACAGCAAGCCCAGACCGCAAAAAGATTCG,"Exon (Mir129b-201/Mir129b-201, exon 1 of 1)",2,94032689,94157964,125276,2,Hsd17b12-201,-83431,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,19,56348,ENSMUSG00000027195,mapped to different genes,2,94241115,94241769,655,*,655,63,0.630534351,0.978307255,0.096183206,7.48E-47,CpGisland,TRUE,U3,Pr-B
5226,cg15891449,-0.00000395,0.0000102,-0.388659732,0.697794673,loss,ns,-0.0000192,0.0000173,-1.111390016,0.26726172,neg,ns,0.000962348,0.005057802,0.190269986,0.849222107,pos,ns,0.070978709,-0.000188588,0.000173937,-1.084229951,0.279105363,neg,ns,0.568215066,Ets1,Ets1_Intergenic_downstream,9,32987047,32987096,32987047,32987048,50,-,CGAGGGGGTCTGAACTCCGAATTCCACCAGCCTGCACTCTGAAAATGAAC,Distal Intergenic,9,32696384,32754428,58045,1,Ets1-205,290712,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,8,23871,ENSMUSG00000032035,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16756,cg18238089,-0.00000614,0.00000644,-0.953563932,0.341047356,loss,ns,0.0000122,0.0000109,1.111315962,0.267293533,pos,ns,0.002273488,0.003203103,0.709776696,0.478376156,pos,ns,0.320230476,-0.0000701,0.000110154,-0.636620764,0.524841692,neg,ns,0.887020321,Tia1,Tia1_threeUTR,6,86423605,86423654,86423653,86423654,50,-,GAGTGTCTCTGAAGAATGGACAGAATTGCCCTGGCTAACTACAAGCTACG,3' UTR,6,86404219,86431201,26983,1,Tia1-203,19386,Gm44790-201;Tia1-203;Tia1-202;Tia1-214;Tia1-218;Tia1-212;Tia1-201;Tia1-211;Tia1-221;Tia1-223;Tia1-205;Tia1-216;Tia1-206;Tia1-219;Tia1-204;Tia1-213;Tia1-217;Tia1-209;Tia1-226;Tia1-207;Tia1-210;Tia1-225;Tia1-228;Tia1-220;Tia1-208,Gm44790;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1,-3004;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;-1822,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,5,7,21841,ENSMUSG00000071337,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5041,cg05675336,-0.00000431,0.00000307,-1.404418342,0.161195431,loss,ns,-0.00000579,0.00000521,-1.111273843,0.267311629,neg,ns,-0.001329488,0.001526812,-0.870760742,0.384558602,neg,ns,0.41503747,0.000086,0.0000525,1.638305488,0.10237251,pos,ns,0.901756843,Hbp1,Hbp1_Exon,12,31937706,31937755,31937706,31937707,50,-,CGTGCATAGGAATGTAAACTTTTGCTAGTGGCTATGATGTGTACAGGAGA,"Exon (Hbp1-202/Hbp1, exon 4 of 11)",12,31926254,31950535,24282,2,Hbp1-202,12780,Cog5-201;Hbp1-202;Hbp1-201;Hbp1-209;Hbp1-207;Hbp1-204;Hbp1-208;Hbp1-206;Hbp1-205;Hbp1-203,Cog5;Hbp1;Hbp1;Hbp1;Hbp1;Hbp1;Hbp1;Hbp1;Hbp1;Hbp1,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,Exon,1,3,73389,ENSMUSG00000002996,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24502,cg07069838,0.000100827,0.00000914,11.03210889,4.31E-24,gain,yes,0.0000173,0.0000155,1.111251923,0.267321046,pos,ns,0.005078897,0.004548797,1.116536326,0.265057295,pos,ns,0.576660238,0.000136649,0.000156433,0.873532913,0.383048838,pos,ns,0.571230118,Gm12933,Gm12933_Promoter,4,126656816,126656865,126656816,126656817,50,-,CGCAAGTGCTAATCAGCTCCATTGACACACACAGGCTGGGGCTACAATCC,Promoter (8-9kb),4,126665254,126666125,872,1,Gm12933-201,-8438,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,3,620877,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27756,cg04913746,-0.0000474,0.00000924,-5.130462454,0.000000511,loss,yes,0.0000174,0.0000157,1.111249174,0.267322227,pos,ns,-0.003122175,0.004600281,-0.678692263,0.497839214,neg,ns,0.302910897,-0.0000715,0.000158203,-0.451880108,0.651671357,neg,ns,0.695633314,Enah,Enah_Exon,1,181922252,181922301,181922252,181922253,50,-,CGTAATGGGGAAGAACAGGGTGGAAGGCTGAACCTAAAGATGTTGCAAAA,"Exon (Enah-205/Enah, exon 7 of 15)",1,181896384,182019661,123278,2,Enah-211,97360,Enah-211;Enah-202;Enah-203;Enah-205;Enah-210;Enah-201;Enah-204;Enah-212;Enah-215;Enah-209;Enah-216,Enah;Enah;Enah;Enah;Enah;Enah;Enah;Enah;Enah;Enah;Enah,0;0;0;0;0;0;0;0;-4892;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,13800,ENSMUSG00000022995,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18474,cg04861468,-0.00000287,0.00000222,-1.289304299,0.198253478,loss,ns,0.0000042,0.00000378,1.111211343,0.267338481,pos,ns,0.002687533,0.001106301,2.429295105,0.015696149,pos,ns,1.80420689,-0.000107195,0.000038,-2.817542849,0.005149999,neg,ns,0.951376466,Prpf3,Prpf3_Exon,3,95849776,95849825,95849776,95849777,50,+,CGCTTCCTGGAACTCCTACAGTTCAAGAAAAAGGACTCTCCCATAATATA,"Exon (Prpf3-203/Prpf3, exon 3 of 6)",3,95830124,95855885,25762,2,Prpf3-201,6060,Prpf3-201;Prpf3-204;Prpf3-207;Prpf3-208;Prpf3-206;Prpf3-203;Prpf3-205,Prpf3;Prpf3;Prpf3;Prpf3;Prpf3;Prpf3;Prpf3,0;0;0;-4609;-3600;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,6,70767,ENSMUSG00000015748,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12880,cg25019647,0.0000123,0.0000112,1.105283108,0.269894011,gain,ns,-0.0000211,0.000019,-1.111106768,0.267383416,neg,ns,-0.013791034,0.005551982,-2.483983805,0.013520151,neg,ns,1.869018453,0.000445732,0.000190932,2.334502987,0.020207737,pos,ns,0.801812413,Gm47010,Gm47010_Intergenic_upstream,14,67632968,67633017,67633016,67633017,50,-,GTACTGTAGTTTCTCATGGAAACACTTTGTGAAAAGCCAGTCGTATATCG,Distal Intergenic,14,67588363,67588792,430,2,Gm47010-201,-44225,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,8,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17243,cg17201740,0.00000598,0.00000226,2.647216125,0.008530505,gain,ns,0.00000427,0.00000384,1.111031016,0.267415969,pos,ns,0.001367937,0.00112505,1.215890055,0.224951882,pos,ns,0.647910369,0.0000125,0.0000387,0.324021573,0.746140207,pos,ns,0.017252632,Nog,Nog_Exon,11,89301344,89301393,89301392,89301393,50,-,GAAATGATGGGGTACTGGATGGGAATCCAGCCGCAGCGCTGGCCCCCGCG,Promoter (<=1kb),11,89300638,89302332,1695,2,Nog-201,939,Nog-201,Nog,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,36,18121,ENSMUSG00000048616,conserved gene and region,11,89301268,89301419,152,*,152,13,0.664473684,0.775510204,0.085526316,2.34E-09,CpGisland,TRUE,U13,Hc-P
13610,cg11079986,0.00000318,0.000000771,4.124634825,0.0000477,gain,ns,-0.00000146,0.00000131,-1.110973624,0.267440634,neg,ns,-0.000200614,0.000383866,-0.522613185,0.601616748,neg,ns,0.220680083,0.000000666,0.0000132,0.050487571,0.959766368,pos,ns,0.01585356,Dlx1,Dlx1_Exon,2,71530104,71530153,71530104,71530105,50,+,CGGGCACTACTCCATGCACTGTTTACACTCGGCGGGCCATTCGCAGCCCG,"Exon (Dlx1-201/Dlx1, exon 1 of 3)",2,71528113,71533980,5868,1,Dlx1-201,1991,Dlx1-201;Dlx1-202;Dlx1-205;Dlx1-204;Dlx1-203;Dlx1-206;Metap1d-201;Metap1d-205,Dlx1;Dlx1;Dlx1;Dlx1;Dlx1;Dlx1;Metap1d;Metap1d,0;0;0;0;0;-627;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,36,13390,ENSMUSG00000041911,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
10499,cg19908097,0.000031,0.00000722,4.290015637,0.0000239,gain,ns,0.0000136,0.0000123,1.110793489,0.267518059,pos,ns,0.007155719,0.003592196,1.992018319,0.047245981,pos,ns,1.325635132,-0.000229004,0.000123535,-1.853749363,0.064724845,neg,ns,0.712382876,Hecw2,Hecw2_Exon,1,53904376,53904425,53904376,53904377,50,+,CGGACTTTGGTGATCATGTGCTTCAAACACGTGTTGTTTGTAAACATGCG,"Exon (Hecw2-203/Hecw2, exon 14 of 29)",1,53806876,54194048,387173,2,Hecw2-203,289623,Hecw2-203;Hecw2-201,Hecw2;Hecw2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,6,329152,ENSMUSG00000042807,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9089,cg01319626,-0.0000423,0.0000161,-2.617382853,0.009295288,loss,ns,-0.0000305,0.0000274,-1.110679363,0.267567121,neg,ns,-0.009201447,0.008037443,-1.144822748,0.253165696,neg,ns,0.596595141,-0.000325805,0.000276407,-1.178714231,0.239415919,neg,ns,0.366258689,Slc39a10,Slc39a10_fiveUTR,1,46853425,46853474,46853425,46853426,50,-,CGGTTCTGGGGGAGGGAATGTAAACAAATCGGGGTTTTATAGTTACCTCA,Promoter (<=1kb),1,46807544,46854046,46503,2,Slc39a10-201,572,Slc39a10-201;Slc39a10-204;Slc39a10-203,Slc39a10;Slc39a10;Slc39a10,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,4,227059,ENSMUSG00000025986,conserved gene but different region,1,46852697,46854136,1440,*,1440,172,0.693055556,1.006927505,0.119444444,1.33E-144,CpGisland,TRUE,U1,Pr-A
1389,cg12121162,-0.0000103,0.0000074,-1.393170592,0.164566369,loss,ns,-0.000014,0.0000126,-1.110633369,0.267586895,neg,ns,-0.008666373,0.003685248,-2.351638907,0.019316471,neg,ns,1.714072213,0.000200892,0.000126735,1.585129494,0.113956447,pos,ns,0.835770071,Utrn,Utrn_fiveUTR,10,12614665,12614714,12614665,12614666,50,-,CGGTCACTGGACAATGATTTGTCAGTTCTCTGAGCATGCTCGTTTCCAGG,5' UTR,10,12382188,12861735,479548,2,Utrn-201,247021,Utrn-201;Utrn-205;Utrn-204,Utrn;Utrn;Utrn,0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,2,22288,ENSMUSG00000019820,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26492,cg17944110,0.00000203,0.000002,1.013192593,0.311758313,gain,ns,-0.00000378,0.0000034,-1.11059353,0.267604024,neg,ns,0.000826629,0.000996382,0.829630805,0.407385944,pos,ns,0.389993959,-0.0000544,0.0000343,-1.588870388,0.11310899,neg,ns,0.045381362,Casz1,Casz1_fiveUTR,4,148804477,148804526,148804477,148804478,50,-,CGGACTTGGAAAGTCACCCAAAGCCGCCCCAAGTGCAGGTAAGAGACTCG,Promoter (<=1kb),4,148804429,148945129,140701,1,Casz1-201,48,Casz1-201;Casz1-202;Casz1-203,Casz1;Casz1;Casz1,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
23721,cg08228814,0.0000118,0.00000817,1.445439718,0.149344545,gain,ns,-0.0000154,0.0000139,-1.110474057,0.267655395,neg,ns,0.000803302,0.004065695,0.19758039,0.843502869,pos,ns,0.073913436,0.0000805,0.000139819,0.575917682,0.565088675,pos,ns,0.926976363,Rbm19,Rbm19_Intron,5,120192961,120193010,120193009,120193010,50,+,ATTGTTATTGACTTGTGTTCTCTGTGTTCCGCAAACATTTCACTCAGCCG,"Intron (Rbm19-201/Rbm19, intron 23 of 23)",5,120116465,120198981,82517,1,Rbm19-201,76496,Rbm19-201;Rbm19-209;Rbm19-202;Rbm19-204;Rbm19-203;Rbm19-206;Rbm19-210,Rbm19;Rbm19;Rbm19;Rbm19;Rbm19;Rbm19;Rbm19,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,13,74111,ENSMUSG00000029594,conserved gene and region,5,120192985,120193121,137,*,137,10,0.569343066,0.930706522,0.072992701,0.00000123,CpGisland,TRUE,U11,Tr-P
19971,cg26340252,-0.0000126,0.00000341,-3.68071316,0.000274231,loss,ns,0.00000643,0.00000579,1.110446738,0.267667143,pos,ns,-0.001474947,0.001697467,-0.86891043,0.385568341,neg,ns,0.413898634,0.000011,0.0000584,0.189277286,0.84999936,pos,ns,0.91484447,Inppl1,Inppl1_Intron,7,101834112,101834161,101834160,101834161,50,+,CAGCTGTCTAAACAGCCCCTCTGGGCTGTGGTACCAGTCTGGGCTCCCCG,"Intron (Inppl1-201/Inppl1, intron 2 of 28)",7,101822632,101838229,15598,2,Inppl1-201,4068,Inppl1-201;Inppl1-202;Inppl1-204;Inppl1-203;Inppl1-207;Inppl1-209;Inppl1-206;Inppl1-205,Inppl1;Inppl1;Inppl1;Inppl1;Inppl1;Inppl1;Inppl1;Inppl1,0;0;-4846;0;-3962;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,2,16332,ENSMUSG00000032737,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26868,cg18876430,-0.00000642,0.00000193,-3.33129744,0.000968938,loss,ns,0.00000364,0.00000327,1.110400748,0.267686921,pos,ns,0.00090859,0.000959449,0.946992234,0.34438032,pos,ns,0.462961675,0.0000101,0.000033,0.307186629,0.758907576,pos,ns,0.065669093,Nol4l,Nol4l_Exon,2,153529495,153529544,153529495,153529496,50,-,CGCTGCCCAGGCGGAAGCCCTTGGAGCGCACCCAGAACTGGAACTTGCCT,Promoter (<=1kb),2,153407462,153529971,122510,2,Nol4l-201,427,Nol4l-201,Nol4l,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,14,329540,ENSMUSG00000061411,conserved gene and region,2,153528543,153530628,2086,*,2086,233,0.761744966,0.771121688,0.111697028,6.66E-188,CpGisland,TRUE,NA,NRS
1400,cg02593960,-0.0000114,0.00000727,-1.574242353,0.116451412,loss,ns,-0.0000137,0.0000123,-1.110324795,0.267719586,neg,ns,-0.005842785,0.003616197,-1.615726494,0.107170678,neg,ns,0.96992402,-0.00000777,0.000124361,-0.062475327,0.950224571,neg,ns,0.86267379,Med14,Med14_Exon,X,12680249,12680298,12680249,12680250,50,-,CGTGGTGGATTCATCTCTGCAAACCTCTTCAGAATGTTGCTGACCATCAT,"Exon (Med14-202/Med14, exon 30 of 31)",20,12675369,12762073,86705,2,Med14-202,81775,Med14-202;Med14-203;Med14-204,Med14;Med14;Med14,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,7,26896,ENSMUSG00000064127,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15611,cg20022886,-0.0000131,0.00000555,-2.357659493,0.019011628,loss,ns,-0.0000105,0.00000944,-1.110294234,0.26773273,neg,ns,0.000083,0.002764186,0.030017222,0.976072634,pos,ns,0.010517863,-0.000105659,0.0000951,-1.111496207,0.267216105,neg,ns,0.909328949,Nfib,Nfib_threeUTR,4,82293113,82293162,82293113,82293114,50,+,CGTGCAAGACCTGCAAAAGTGGGGCCCTTCGTCAGAATATACTTCCTGGT,3' UTR,4,82290173,82505308,215136,2,Nfib-201,212146,Nfib-201;Nfib-203;Nfib-202;Nfib-205;Nfib-206;Nfib-204,Nfib;Nfib;Nfib;Nfib;Nfib;Nfib,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,11,66,18028,ENSMUSG00000008575,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26327,cg10571233,0.0000385,0.0000102,3.759946682,0.000203106,gain,ns,0.0000193,0.0000174,1.110221535,0.267763999,pos,ns,0.003602517,0.005095639,0.706980387,0.480109749,pos,ns,0.318659475,0.000179688,0.000175239,1.025393045,0.305977224,pos,ns,0.742896707,Gm14111,Gm14111_Promoter,2,146764668,146764717,146764668,146764669,50,-,CGTCATCTAGTTTGATTATTCATACTTGTGTTTCTGCTTGAATTAAAGCA,Promoter (9-10kb),2,146754707,146755705,999,2,Gm14111-201,-9012,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,17,668918,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24024,cg26809911,-0.00000472,0.00000197,-2.389475509,0.017469849,loss,ns,0.00000372,0.00000335,1.110183784,0.267780238,pos,ns,0.000114983,0.000982456,0.117036078,0.906907251,pos,ns,0.042437126,0.0000114,0.0000338,0.337051763,0.736305958,pos,ns,0.046028493,Cog7,Cog7_Exon,7,121981429,121981478,121981477,121981478,50,+,GGTTCACCTCTTGGATGAACAGCTGCAGCTTCATCACCAGGGTGGCTGCG,Promoter (<=1kb),7,121880033,121981711,101679,2,Cog7-203,233,Cog7-203;Cog7-201;Cog7-202,Cog7;Cog7;Cog7,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,233824,ENSMUSG00000034951,conserved gene and region,7,121981477,121981872,396,*,396,46,0.595959596,1.32191582,0.116161616,1.79E-38,CpGisland,TRUE,U1,Pr-A
3890,cg22620222,-0.0000146,0.00000578,-2.524178593,0.012096041,loss,ns,0.0000109,0.00000983,1.110132535,0.267802283,pos,ns,0.000436987,0.002879127,0.151777431,0.87946121,pos,ns,0.055783311,-0.000115843,0.000099,-1.169976538,0.242909111,neg,ns,0.908705125,5730522E02Rik,5730522E02Rik_Intron,11,25693400,25693449,25693400,25693401,50,+,CGGACAGTGTGTAAGATATAATACATTAATCTGGGCCATTTCAATTTCTG,"Intron (5730522E02Rik-202/5730522E02Rik, intron 2 of 5)",11,25617668,26210569,592902,2,5730522E02Rik-202,517120,5730522E02Rik-202;5730522E02Rik-201;5730522E02Rik-208,5730522E02Rik;5730522E02Rik;5730522E02Rik,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,90,70626,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27313,cg02570800,-0.000000926,0.00000341,-0.271700233,0.786033374,loss,ns,0.00000643,0.00000579,1.109997347,0.267860442,pos,ns,0.005086123,0.001696032,2.998836726,0.002929612,pos,ns,2.53318988,-0.000158523,0.0000583,-2.717855363,0.006940268,neg,ns,0.914749787,Ywhab,Ywhab_Intron,2,164013057,164013106,164013105,164013106,50,+,CAGGATGCCACATTCTAAAACAACTCTTCGAAAATATTGCTCTGTATACG,"Intron (Ywhab-201/Ywhab, intron 2 of 5)",2,163994960,164018588,23629,1,Ywhab-201,18097,Ywhab-201;Ywhab-202,Ywhab;Ywhab,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,3,54401,ENSMUSG00000018326,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5319,cg01181227,0.00000469,0.00000109,4.283399159,0.0000246,gain,ns,-0.00000206,0.00000186,-1.109981335,0.267867331,neg,ns,0.000500825,0.000544595,0.919627459,0.358482496,pos,ns,0.445532045,-0.00000528,0.0000187,-0.282171338,0.778000424,neg,ns,0.02502291,Nkx1-1,Nkx1-1_Promoter,5,33433040,33433089,33433040,33433041,50,+,CGAATTTTGACCCTATAATTTAGATGTTCGGGGGGAGTTTGCAAGGTGCT,Promoter (<=1kb),5,33430734,33433976,3243,2,Nkx1-1-201,887,Nkx1-1-201,Nkx1-1,0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,8,13,672284,ENSMUSG00000029112,conserved gene and region,5,33432835,33433235,401,*,401,27,0.518703242,1.022283071,0.067331671,3.24E-16,CpGisland,TRUE,U13,Hc-P
17491,cg25462075,-0.00000366,0.00000259,-1.413577093,0.158489486,loss,ns,-0.00000488,0.00000439,-1.109956649,0.267877952,neg,ns,-0.000874852,0.001287338,-0.679582135,0.497276206,neg,ns,0.303402321,0.0000451,0.0000443,1.019766052,0.308634599,pos,ns,0.931020364,Chtop,Chtop_Exon,3,90502224,90502273,90502224,90502225,50,-,CGGCTCGTCCACCTCGGAGCAGGTTTTGACCTTAGAGAGGAGGCATACAA,"Exon (Chtop-201/Chtop, exon 4 of 5)",3,90498956,90509450,10495,2,Chtop-205,7177,Chtop-205;Chtop-201;Chtop-206;Chtop-203;Chtop-202;Chtop-207;Chtop-204;Chtop-209;Chtop-208,Chtop;Chtop;Chtop;Chtop;Chtop;Chtop;Chtop;Chtop;Chtop,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,10,66511,ENSMUSG00000001017,conserved gene but different region,3,90502125,90502239,115,*,115,10,0.643478261,1.033243486,0.086956522,0.000000242,CpGisland,TRUE,U10,Tr-S
19630,cg21995967,-0.00000594,0.00000468,-1.269604119,0.205177931,loss,ns,0.00000882,0.00000795,1.1096836,0.267995453,pos,ns,-0.002938592,0.002327783,-1.262399521,0.207753908,neg,ns,0.682450799,0.0000083,0.0000801,0.103671889,0.917496772,pos,ns,0.916468673,Gm28267,Gm28267_Intergenic_upstream,9,100194302,100194351,100194302,100194303,50,+,CGCCACCAAACAGCTCCTAAAGACTGTTGTATTTAATCATGTCTGTGCAC,Distal Intergenic,9,100404495,100404759,265,1,Gm28267-201,-210144,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,29,29,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6469,cg09189709,-0.00000827,0.0000111,-0.747160647,0.455532923,loss,ns,0.0000209,0.0000188,1.109558526,0.268049287,pos,ns,0.017981015,0.005508403,3.264288371,0.001220069,pos,ns,2.913615434,-0.000600717,0.000189434,-3.171120834,0.001670448,neg,ns,0.776525305,Rc3h2,Rc3h2_threeUTR,2,37374406,37374455,37374406,37374407,50,-,CGATTCTGCATAACTTAGGAGAATTTAATATCTAGTACATCAGCTGAAAG,3' UTR,2,37370069,37422903,52835,2,Rc3h2-202,48448,Rc3h2-202;Rc3h2-201;Rc3h2-203;Rc3h2-205;Rc3h2-208;Rc3h2-206,Rc3h2;Rc3h2;Rc3h2;Rc3h2;Rc3h2;Rc3h2,0;0;0;0;3116;6805,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,7,10,319817,ENSMUSG00000075376,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12675,cg12799227,-0.0000201,0.00000651,-3.089603755,0.002185867,loss,ns,-0.0000123,0.0000111,-1.109376491,0.268127653,neg,ns,-0.002901631,0.003240445,-0.895442266,0.37124547,neg,ns,0.430338838,-0.000143569,0.000111439,-1.2883252,0.198593517,neg,ns,0.893633472,Scn9a,Scn9a_Exon,2,66563587,66563636,66563587,66563588,50,-,CGAAGAGCTGAAACATTGCCTAGGTTTACAAATTCTGTTAAATACCTGTA,"Exon (Scn9a-201/Scn9a, exon 6 of 28)",2,66480080,66634952,154873,2,Scn9a-201,71316,Scn9a-201;Scn9a-202;Scn9a-206;Scn9a-207;Scn9a-203;Scn9a-204,Scn9a;Scn9a;Scn9a;Scn9a;Scn9a;Scn9a,0;0;0;0;0;71326,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,20274,ENSMUSG00000075316,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14220,cg25577821,0.0000955,0.0000145,6.566052124,2.18E-10,gain,yes,-0.0000274,0.0000247,-1.109299394,0.268160847,neg,ns,-0.015469784,0.007239074,-2.136983685,0.033381761,neg,ns,1.476490755,0.000466681,0.000248951,1.874589252,0.061789441,pos,ns,0.615627602,Onecut1,Onecut1_Intergenic_upstream,9,74847050,74847099,74847098,74847099,50,-,CCCCATCAGCTGCCCTGAAACCTTAATTGAATGACAGATGGTCATTTTCG,Distal Intergenic,9,74861921,74891781,29861,1,Onecut1-201,-14871,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,28,15379,ENSMUSG00000043013,conserved gene and region,9,74847098,74847297,200,*,200,16,0.73,0.614439324,0.08,5.65E-11,CpGisland,TRUE,NA,NRS
8028,cg16267458,-0.00000701,0.000006,-1.169108902,0.243257933,loss,ns,0.0000113,0.0000102,1.109290567,0.268164648,pos,ns,0.005009582,0.002985658,1.677881765,0.094378012,pos,ns,1.025129173,-0.000179025,0.000102677,-1.743581957,0.082223353,neg,ns,0.691386974,Pax5,Pax5_Exon,4,44697558,44697607,44697558,44697559,50,-,CGAAGCTGCCTGGAGATGTCGCAGGGCCTGACACCTTGATGAGCAAGTTC,"Exon (Pax5-201/Pax5, exon 2 of 10)",4,44524757,44710487,185731,2,Pax5-201,12880,Pax5-201;Pax5-202;Pax5-203;Pax5-204;Pax5-205;Pax5-207;Pax5-206;Pax5-209;Pax5-210;Pax5-212;Pax5-213;Pax5-214;Pax5-215;Pax5-208;Pax5-216;Pax5-217;Pax5-218;Pax5-219,Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,45,18507,ENSMUSG00000014030,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23802,cg10719965,-0.00000246,0.00000152,-1.621308668,0.105968087,loss,ns,0.00000286,0.00000258,1.109278647,0.26816978,pos,ns,0.000756606,0.000755422,1.001566714,0.317334045,pos,ns,0.498483332,-0.0000434,0.000026,-1.670807108,0.095768993,neg,ns,0.965859366,Gm42927,Gm42927_Intergenic_downstream,3,120426634,120426683,120426682,120426683,50,-,AAACCATCTTTACTGCCTGAGGCTAATGTGTAAGTTAGTGAGAGATTACG,Distal Intergenic,3,120735721,120739561,3841,2,Gm42927-201,312927,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,7,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5171,cg05765630,0.0000273,0.00000939,2.910445802,0.003870499,gain,ns,0.0000177,0.0000159,1.109035009,0.268274702,pos,ns,0.00406642,0.004672269,0.870330936,0.384793008,pos,ns,0.414772828,0.000127545,0.000160679,0.793785852,0.427927291,pos,ns,0.283868737,Prrxl1,Prrxl1_Promoter,14,32598680,32598729,32598728,32598729,50,+,CGCCATTAGACTTGCTTTTTTTGCAGTTTATGTGATTTGATCCAATCCCG,Promoter (<=1kb),14,32599407,32649204,49798,1,Prrxl1-203,-678,Prrxl1-203;Prrxl1-204;Prrxl1-202;Prrxl1-201;Prrxl1-205,Prrxl1;Prrxl1;Prrxl1;Prrxl1;Prrxl1,0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,14,23,107751,ENSMUSG00000041730,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
19692,cg00841581,-0.00000164,0.00000176,-0.92831467,0.353966598,loss,ns,0.00000332,0.00000299,1.10902658,0.268278332,pos,ns,-0.001218511,0.000877317,-1.388905403,0.165858498,neg,ns,0.780262271,0.0000509,0.0000302,1.686056289,0.092791096,pos,ns,0.037409313,Stag1,Stag1_fiveUTR,9,100643622,100643671,100643670,100643671,50,+,TGGAAAATGCCACCAGATGGCGGGTTAGGATTGCAGCTCCGTTGAAGGCG,Promoter (<=1kb),9,100643636,100957399,313764,1,Stag1-216,0,Stag1-205;Stag1-213;Stag1-206;Stag1-210;Stag1-204;Stag1-212;Stag1-201;Stag1-208;Stag1-216;Stag1-203;Stag1-207,Stag1;Stag1;Stag1;Stag1;Stag1;Stag1;Stag1;Stag1;Stag1;Stag1;Stag1,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,6,15,20842,ENSMUSG00000037286,conserved gene and region,9,100642808,100644342,1535,*,1535,206,0.725732899,1.021439208,0.134201954,3.49E-185,CpGisland,TRUE,U1,Pr-A
6253,cg01977579,-0.0000187,0.00000669,-2.793681091,0.005535469,loss,ns,0.0000126,0.0000114,1.108914998,0.268326394,pos,ns,0.008549533,0.003331223,2.566484398,0.010742925,pos,ns,1.968877453,-0.000387255,0.00011456,-3.380357303,0.000816554,neg,ns,0.156906108,Pabpc1,Pabpc1_fiveUTR,15,36608780,36608829,36608780,36608781,50,+,CGGGTTATTTTATAAAAGAGGAAGAAAAAAAATAAAAGTCTCCGGCGGGG,Promoter (<=1kb),15,36595661,36608973,13313,2,Pabpc1-201,144,Pabpc1-201;Pabpc1-210;Pabpc1-203;Pabpc1-208,Pabpc1;Pabpc1;Pabpc1;Pabpc1,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,4,18458,ENSMUSG00000022283,mapped to different genes,15,36607912,36608781,870,*,870,95,0.703448276,0.887688359,0.109195402,5.17E-76,CpGisland,TRUE,U1,Pr-A
20420,cg04138506,0.00000402,0.00000349,1.154756983,0.249079315,gain,ns,0.00000657,0.00000592,1.10887264,0.26834464,pos,ns,0.000693353,0.001734701,0.399696097,0.689655615,pos,ns,0.161367723,0.0000342,0.0000597,0.57372936,0.566566958,pos,ns,0.135330669,Hoxc4,Hoxc4_Exon,15,103034850,103034899,103034850,103034851,50,+,CGGGATTCCAGCATCACCACCAGGAGCTGTACCCACCACCGCCTCCGCGC,"Exon (Hoxc4-202/Hoxc4, exon 2 of 4)",15,103018934,103036405,17472,1,Hoxc4-202,15916,Hoxc4-202;Hoxc4-201,Hoxc4;Hoxc4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,91,15423,ENSMUSG00000075394,conserved gene and region,15,103034736,103035107,372,*,372,27,0.626344086,0.794494542,0.072580645,4.60E-17,CpGisland,TRUE,NA,NRS
21237,cg10165689,0.000005,0.00000436,1.1458294,0.252749493,gain,ns,-0.00000822,0.00000741,-1.108812907,0.268370373,neg,ns,0.002181272,0.002170989,1.004736411,0.315807395,pos,ns,0.500577705,0.0000372,0.0000747,0.498247249,0.618663082,pos,ns,0.872775428,Ssbp3,Ssbp3_Intron,4,106927026,106927075,106927026,106927027,50,-,CGATTCTGACCCCAAGCTACAGAAAATGAACTTAAATCTAGTTGACTGTC,"Intron (Ssbp3-216/Ssbp3, intron 4 of 8)",4,106910701,107031069,120369,1,Ssbp3-216,16325,Ssbp3-216;Ssbp3-201;Ssbp3-215;Ssbp3-202;Ssbp3-203;Ssbp3-207;Ssbp3-213;Ssbp3-214;Ssbp3-211,Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,18,72475,ENSMUSG00000061887,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
224,cg16438448,8.77E-08,0.00000031,0.282599555,0.777672417,gain,ns,-0.000000585,0.000000527,-1.108653704,0.268438965,neg,ns,-0.000307267,0.000154501,-1.988774527,0.04760496,neg,ns,1.322347799,0.00000551,0.00000531,1.036260059,0.300888483,pos,ns,0.992656727,Gm21992,Gm21992_threeUTR,19,4801624,4801673,4801672,4801673,50,+,GCATCTGAGCCGCCCGCAGGTAATCATTATAGGAGCCCGAATAGCGTGCG,3' UTR,19,4742913,4811612,68700,2,Gm21992-203,9939,Gm21992-203;Gm21992-206;Gm21992-204;Gm21992-201;Gm21992-205;Gm21992-202;Rbm14-201;Rbm14-202;Rbm14-203,Gm21992;Gm21992;Gm21992;Gm21992;Gm21992;Gm21992;Rbm14;Rbm14;Rbm14,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,21,48,102902673,ENSMUSG00000096370,mapped to different genes,19,4801605,4801812,208,*,208,24,0.586538462,1.371428571,0.115384615,3.42E-20,CpGisland,TRUE,U10,Tr-S
27482,cg22958187,0.000149312,0.0000104,14.37388693,2.98E-36,gain,yes,-0.0000196,0.0000176,-1.108644041,0.268443128,neg,ns,-0.003552483,0.005170084,-0.687122837,0.492519031,neg,ns,0.307576983,0.000500889,0.000177799,2.817166887,0.005155879,pos,ns,0.846432731,Pbx1,Pbx1_Intron,1,168357719,168357768,168357767,168357768,50,-,AAAATCTATCATGCCTCTAATGTACCCTGATAGCTGAGTGTGTGGATCCG,"Intron (Pbx1-208/Pbx1, intron 2 of 7)",1,168119364,168432270,312907,2,Pbx1-208,74502,Pbx1-208;Pbx1-205;Pbx1-206;Pbx1-201;Pbx1-202;Pbx1-204,Pbx1;Pbx1;Pbx1;Pbx1;Pbx1;Pbx1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,84,18514,ENSMUSG00000052534,conserved gene and region,1,168357767,168357940,174,*,174,14,0.568965517,1.0875,0.08045977,1.09E-09,CpGisland,TRUE,U9,En-Pp
6100,cg01155266,-0.0000027,0.00000188,-1.438799217,0.151216282,loss,ns,-0.00000354,0.00000319,-1.108575804,0.268472532,neg,ns,0.000401216,0.000934468,0.429352011,0.667965318,pos,ns,0.175246086,0.0000188,0.0000321,0.58355087,0.559946842,pos,ns,0.946429486,Kpna1,Kpna1_threeUTR,16,36033995,36034044,36034043,36034044,50,+,TTCTCAAATGTTTTCCATAATACTGTTTGCGCTCATTTGCTTGCCTTGCG,3' UTR,16,35983315,36037131,53817,1,Kpna1-201,50680,Kpna1-201;Kpna1-207;Kpna1-202;Kpna1-206;Kpna1-204,Kpna1;Kpna1;Kpna1;Kpna1;Kpna1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,5,16646,ENSMUSG00000022905,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13055,cg07976788,-0.00000435,0.00000224,-1.937809727,0.053554351,loss,ns,-0.00000422,0.00000381,-1.108574854,0.268472941,neg,ns,-0.001653921,0.00111633,-1.481569766,0.139470535,neg,ns,0.855517534,0.00000644,0.0000384,0.167643395,0.86697314,pos,ns,0.966124613,Chd3,Chd3_Exon,11,69346665,69346714,69346713,69346714,50,-,TTGGAGAGGTGCTGGTGGCTCTCGGCCAGGCACTCGGCCTCGGCGAAGCG,"Exon (Chd3-203/Chd3, exon 4 of 7)",11,69343273,69348610,5338,2,Chd3-203,1896,Chd3-205;Chd3-203;Chd3-202;Chd3-211;Chd3-201;Chd3-204;Chd3-208;Rnf227-201;Rnf227-203,Chd3;Chd3;Chd3;Chd3;Chd3;Chd3;Chd3;Rnf227;Rnf227,0;0;0;0;0;0;0;6204;5894,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,22,26,216848,ENSMUSG00000018474,conserved gene but different region,11,69346504,69346858,355,*,355,27,0.676056338,0.691010021,0.076056338,1.34E-17,CpGisland,TRUE,U10,Tr-S
1030,cg25728835,0.0000149,0.00000404,3.692018344,0.000262814,gain,ns,0.00000761,0.00000687,1.10852263,0.268495447,pos,ns,0.004648461,0.002011474,2.310972998,0.021490221,pos,ns,1.667759115,-0.0000617,0.0000692,-0.892404464,0.372868368,neg,ns,0.042882789,Irs2,Irs2_Exon,8,11008064,11008113,11008112,11008113,50,-,CGAAGTACTCGTCCTTGGTGTAGAGGGCGATCAGGTACTTGTGCTTGGCG,Promoter (<=1kb),8,10984681,11008458,23778,2,Irs2-201,345,Irs2-201,Irs2,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,384783,ENSMUSG00000038894,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
12944,cg00444928,-0.00000831,0.00000289,-2.874539983,0.004325963,loss,ns,-0.00000544,0.00000491,-1.108407467,0.268545079,neg,ns,-0.000897047,0.001438608,-0.623551628,0.533380608,neg,ns,0.272962778,-0.0000347,0.0000495,-0.700452461,0.48417015,neg,ns,0.952111084,Gm47169,Gm47169_Intergenic_downstream,9,68587350,68587399,68587350,68587351,50,-,CGTACTGTGGCACAATGTATCCCTGGAATTCATAAGTAGGTTGTTTAAAT,Distal Intergenic,9,68552395,68552556,162,1,Gm47169-201,35004,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8462,cg14218309,-0.0000665,0.0000192,-3.467859433,0.000598805,loss,ns,0.0000361,0.0000326,1.108323632,0.268581213,pos,ns,-0.013866341,0.009542802,-1.453068103,0.147216342,neg,ns,0.832043977,0.000537033,0.000328176,1.636415846,0.102767368,pos,ns,0.627991833,Zeb2,Zeb2_Intergenic_upstream,2,45197657,45197706,45197705,45197706,50,+,CTTCTGGCTTTGTACTTCTCAAATGCCTCTTTTAGAAATCGCTTAAGTCG,Distal Intergenic,2,45116441,45117395,955,2,Zeb2-230,-80262,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,9,158,24136,ENSMUSG00000026872,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19435,cg08317466,0.000000127,0.00000176,0.072292867,0.94241546,gain,ns,0.00000332,0.000003,1.108275924,0.268601778,pos,ns,0.001360384,0.000877644,1.550040441,0.122152077,pos,ns,0.913099144,0.00000454,0.0000302,0.15054056,0.880436058,pos,ns,0.963941104,Prpf40b,Prpf40b_threeUTR,15,99305577,99305626,99305577,99305578,50,+,CGCATCTACTACTACAATGCTGACGACAAGCAGTCCGTGTGGGAGAAGCC,3' UTR,15,99295087,99305965,10879,1,Prpf40b-205,10490,Prpf40b-205;Prpf40b-214;Prpf40b-206;Prpf40b-209;Prpf40b-211;Prpf40b-212;Prpf40b-208;Prpf40b-201;Prpf40b-202;Prpf40b-210;Prpf40b-215,Prpf40b;Prpf40b;Prpf40b;Prpf40b;Prpf40b;Prpf40b;Prpf40b;Prpf40b;Prpf40b;Prpf40b;Prpf40b,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,10,54614,ENSMUSG00000023007,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26788,cg15772669,0.0000385,0.00000451,8.533452037,6.42E-16,gain,yes,-0.0000085,0.00000767,-1.108240287,0.26861714,neg,ns,0.002973864,0.002245922,1.324117263,0.186439568,pos,ns,0.729461912,-0.0000607,0.0000772,-0.785852565,0.432554111,neg,ns,0.217964284,Chd5,Chd5_Promoter,4,152338594,152338643,152338642,152338643,50,+,GGGTTGCCACAGCAACCAGACTGGACGTCACAATCCGGGCATGTGTGCCG,Promoter (<=1kb),4,152338651,152390194,51544,1,Chd5-202,-8,Chd5-202;Chd5-205;Chd5-201;Chd5-204;Rpl22-204;Rpl22-208,Chd5;Chd5;Chd5;Chd5;Rpl22;Rpl22,0;0;0;0;12727;12725,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,7,269610,ENSMUSG00000005045,mapped to different genes,4,152338556,152339428,873,*,873,126,0.78465063,0.959390863,0.144329897,2.67E-118,CpGisland,TRUE,U3,Pr-B
5267,cg23250289,0.00000324,0.00000127,2.56005295,0.010939499,gain,ns,0.00000239,0.00000215,1.108229183,0.268621927,pos,ns,0.000296811,0.000630557,0.470712243,0.63817727,pos,ns,0.195058668,0.00000148,0.0000217,0.068392747,0.945517088,pos,ns,0.963883257,Srsf12,Srsf12_Exon,4,33223584,33223633,33223584,33223585,50,+,CGTGAGTTTGGTCGATATGGCCCTATAGTAGACGTTTACATTCCACTTGA,"Exon (Srsf12-202/Srsf12, exon 2 of 5)",4,33208991,33233340,24350,1,Srsf12-201,14593,Srsf12-201;Srsf12-202,Srsf12;Srsf12,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,272009,ENSMUSG00000054679,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16132,cg13653556,-0.0000279,0.00000507,-5.502510252,7.85E-08,loss,yes,-0.00000954,0.00000861,-1.10810341,0.26867615,neg,ns,0.005855292,0.002521655,2.322003484,0.020880404,pos,ns,1.680261107,-0.000068,0.0000867,-0.783708697,0.433809426,neg,ns,0.924738131,Aatf,Aatf_Intron,11,84481919,84481968,84481919,84481920,50,-,CGTATTTCAGGCCCGACTTGCTAGTGTTTTAAAAAAGACACAAATTTATT,"Intron (Aatf-201/Aatf, intron 5 of 12)",11,84422855,84513522,90668,2,Aatf-201,31554,Aatf-201;Aatf-202;Aatf-204,Aatf;Aatf;Aatf,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,10,56321,ENSMUSG00000018697,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12744,cg27245375,-0.00000405,0.00000219,-1.846452164,0.065779644,loss,ns,-0.00000413,0.00000373,-1.108052819,0.268697962,neg,ns,-0.001237016,0.001092313,-1.132474267,0.258310267,neg,ns,0.587858331,0.0000385,0.0000376,1.025542249,0.305906969,pos,ns,0.949970975,Tpm1,Tpm1_Exon,9,67031968,67032017,67032016,67032017,50,+,CCAGTGACTTCAAGTTGTTCGTCACAGTTTTCAATTCTTCTTCAAGCTCG,"Exon (Tpm1-215/Tpm1, exon 6 of 9)",9,67022590,67043907,21318,2,Tpm1-212,11890,Tpm1-212;Tpm1-215;Tpm1-216;Tpm1-211;Tpm1-209;Tpm1-202;Tpm1-218;Tpm1-214;Tpm1-213;Tpm1-220;Tpm1-210;Tpm1-208;Tpm1-205;Tpm1-203;Tpm1-206;Tpm1-207;Tpm1-204;Tpm1-201;Tpm1-221;Tpm1-217;Tpm1-219,Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,10,22003,ENSMUSG00000032366,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18210,cg09690890,0.0000561,0.00000845,6.643126663,1.38E-10,gain,yes,0.0000159,0.0000144,1.108007885,0.268717337,pos,ns,0.006251333,0.004206537,1.486099717,0.138269019,pos,ns,0.859275119,-0.0000669,0.000144662,-0.462311454,0.644182292,neg,ns,0.679707021,Celf3,Celf3_Exon,3,94484287,94484336,94484287,94484288,50,+,CGCATTCTCCCGTTGCCACGGAGACTGGGCATCTGCTCCCTTTGTGCTGC,Promoter (<=1kb),3,94484327,94492193,7867,1,Celf3-211,0,Celf3-214;Celf3-208;Celf3-204;Celf3-215;Celf3-201;Celf3-213;Celf3-212;Celf3-207;Celf3-206;Celf3-211;Celf3-205;Celf3-209;Celf3-210;Celf3-202;Celf3-203;Riiad1-202,Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Riiad1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,12,78784,ENSMUSG00000028137,conserved gene but different region,3,94484222,94484339,118,*,118,11,0.652542373,0.879403794,0.093220339,2.29E-08,CpGisland,TRUE,U11,Tr-P
4019,cg04676614,-0.0000141,0.0000115,-1.224387079,0.221735887,loss,ns,0.0000216,0.0000195,1.107966373,0.268735237,pos,ns,0.014985988,0.005712627,2.623309402,0.009138638,pos,ns,2.039118539,-0.000451148,0.000196457,-2.296424689,0.022318314,neg,ns,0.693659444,Slmap,Slmap_Exon,14,26473905,26473954,26473905,26473906,50,+,CGGAGCCGGGCTTCCATACCATCTGGTAGAAAAAGTTTTATTGTGGAAAC,Promoter (<=1kb),14,26413173,26473954,60782,2,Slmap-205,0,Slmap-203;Slmap-205;Slmap-201;Slmap-202;Slmap-204;Slmap-212,Slmap;Slmap;Slmap;Slmap;Slmap;Slmap,0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,7,83997,ENSMUSG00000021870,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13847,cg21907062,0.00000277,0.00000224,1.23689696,0.217061531,gain,ns,-0.00000421,0.0000038,-1.107682081,0.268857846,neg,ns,0.002607079,0.001114202,2.339861549,0.019925232,pos,ns,1.700596622,-0.00000771,0.0000383,-0.201135824,0.840724277,neg,ns,0.949801549,Ola1,Ola1_Intron,2,73099153,73099202,73099201,73099202,50,+,AATTAAAGTTATCCTGGACAAAAACCTCATCTGTAATGACTAGCTAACCG,"Intron (Ola1-201/Ola1, intron 9 of 10)",2,73092801,73214447,121647,2,Ola1-201,115245,Ola1-201;Ola1-206;Ola1-203,Ola1;Ola1;Ola1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,19,67059,ENSMUSG00000027108,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5946,cg21471318,0.0000495,0.00000355,13.94125731,1.25E-34,gain,yes,-0.00000667,0.00000603,-1.107356727,0.268998212,neg,ns,0.002864675,0.001765398,1.622679726,0.105674365,pos,ns,0.976030352,-0.0000858,0.0000607,-1.413423427,0.158534599,neg,ns,0.073786471,Sema5b,Sema5b_Intron,16,35542303,35542352,35542351,35542352,50,-,ATGGTAATTTGTCTTTGTGGTTGGGGCTGCCCATTCACTTTCCGCTCACG,"Intron (Sema5b-205/Sema5b, intron 1 of 5)",16,35541145,35648140,106996,1,Sema5b-205,1158,Sema5b-205;Sema5b-202;Sema5b-201,Sema5b;Sema5b;Sema5b,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,5,20357,ENSMUSG00000052133,conserved gene and region,16,35542345,35542711,367,*,367,33,0.643051771,0.904143337,0.089918256,8.33E-24,CpGisland,TRUE,U3,Pr-B
2949,cg14861986,0.00000812,0.0000068,1.193018305,0.233774488,gain,ns,0.0000128,0.0000116,1.107287159,0.269028232,pos,ns,-0.000836266,0.003385842,-0.246989072,0.805080168,neg,ns,0.094160871,0.0000888,0.000116439,0.763000981,0.446043035,pos,ns,0.821144858,Lrmda,Lrmda_Intron,14,22152475,22152524,22152475,22152476,50,-,CGCTTTTATGTTGTTGTTGTGACAGGTAGATTTATAAGGCTTGAAATTTG,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,132763,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206,Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4560,cg23993631,-0.0000406,0.00000863,-4.700257739,0.00000391,loss,ns,0.0000162,0.0000147,1.107173009,0.269077495,pos,ns,-0.002447398,0.004296635,-0.569607967,0.569356143,neg,ns,0.244615989,-0.000254288,0.000147761,-1.720945172,0.086258533,neg,ns,0.896684278,Gm7917,Gm7917_Intergenic_upstream,18,29766397,29766446,29766445,29766446,50,-,GTATTATAACTATTTATGCCAATTGTGCTATTTCATGCATAAAATTACCG,Distal Intergenic,18,29657054,29657596,543,2,Gm7917-201,-108850,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,8,666073,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26603,cg05822427,-0.00000149,0.00000242,-0.614558943,0.539296827,loss,ns,0.00000456,0.00000412,1.107171234,0.269078261,pos,ns,0.004159438,0.001206806,3.446651173,0.000645932,pos,ns,3.189813254,-0.000113631,0.0000415,-2.737978986,0.006539057,neg,ns,0.952340721,Pex14,Pex14_Intron,4,148981851,148981900,148981899,148981900,50,-,GGAGCATGTTTAAACTAGTCAGATTGAGTGATGCTTCCAGCAACTAATCG,"Intron (Gm17029-202/Gm17029-202, intron 2 of 2)",4,148960535,149099876,139342,2,Pex14-201,117976,Pex14-201;Pex14-202;Pex14-205;Pex14-203,Pex14;Pex14;Pex14;Pex14,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,41,48,56273,ENSMUSG00000028975,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2958,cg09746170,0.00000725,0.00000115,6.302122384,1.01E-09,gain,yes,-0.00000216,0.00000195,-1.10714557,0.269089337,neg,ns,0.000132452,0.000572475,0.231367313,0.817182094,pos,ns,0.087681158,-0.0000126,0.0000197,-0.641391704,0.521742143,neg,ns,0.022299416,Igf2bp2,Igf2bp2_Intron,16,22162090,22162139,22162090,22162091,50,-,CGAGTTCTTCTCAATAAAATCGGACAAAAAATTCAGAGAAAAATAGGAGC,"Intron (Igf2bp2-201/Igf2bp2, intron 1 of 15)",16,22059009,22163299,104291,2,Igf2bp2-201,1160,Igf2bp2-201;Igf2bp2-206;Igf2bp2-202;Igf2bp2-204;Igf2bp2-205,Igf2bp2;Igf2bp2;Igf2bp2;Igf2bp2;Igf2bp2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,5,319765,ENSMUSG00000033581,conserved gene and region,16,22161628,22162270,643,*,643,63,0.68273717,0.840889276,0.097978227,2.15E-47,CpGisland,TRUE,U3,Pr-B
2887,cg12370548,-0.000118659,0.000018,-6.578101198,2.03E-10,loss,yes,0.0000339,0.0000306,1.107081617,0.269116941,pos,ns,-0.020594248,0.008977951,-2.293869468,0.022466601,neg,ns,1.648462626,0.000636028,0.000308751,2.060002855,0.040232712,pos,ns,0.855944553,Ehbp1,Ehbp1_Intron,11,22008188,22008237,22008188,22008189,50,-,CGCCTCCCTCATTAGGAAGGTAAACAATGAAAAGAAGAAGTAGATGATGA,"Intron (Ehbp1-201/Ehbp1, intron 22 of 23)",11,22005828,22285838,280011,2,Ehbp1-201,277601,Ehbp1-201;Ehbp1-202;Ehbp1-207,Ehbp1;Ehbp1;Ehbp1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,34,45,216565,ENSMUSG00000042302,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
4434,cg09841958,0.00010035,0.0000101,9.922322833,2.48E-20,gain,yes,0.000019,0.0000172,1.106905789,0.269192842,pos,ns,0.017899049,0.005033605,3.555910366,0.000435466,pos,ns,3.361045913,-0.0000907,0.000173105,-0.523740787,0.600833058,neg,ns,0.165513474,Barhl1,Barhl1_Exon,2,28911341,28911390,28911389,28911390,50,-,CCTGCGGTTCTGGTACCAGGTCTTGACCTGCGTGTCGGTGAGGTTGAGCG,"Exon (Barhl1-201/Barhl1, exon 2 of 3)",2,28907679,28916412,8734,2,Barhl1-201,5022,Barhl1-201;Barhl1-204;Barhl1-203;Barhl1-202;Barhl1-205,Barhl1;Barhl1;Barhl1;Barhl1;Barhl1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,6,54422,ENSMUSG00000026805,conserved gene and region,2,28911288,28911611,324,*,324,29,0.635802469,0.885997171,0.089506173,6.35E-21,CpGisland,TRUE,U13,Hc-P
23130,cg23640111,0.000108643,0.0000179,6.065156117,3.83E-09,gain,yes,-0.0000337,0.0000304,-1.106889316,0.269199953,neg,ns,0.024930096,0.00891533,2.796317789,0.005491625,pos,ns,2.260299122,-0.000646889,0.000306597,-2.109897489,0.035668325,neg,ns,0.238446949,Rnf220,Rnf220_Intron,4,117317551,117317600,117317599,117317600,50,+,AGAAATTAATTTGCTGGGCTGAGCATGTTTACCTTTTCCCAGCAAAGGCG,"Intron (Rnf220-201/Rnf220, intron 2 of 14)",4,117271463,117497052,225590,2,Rnf220-201,179452,Rnf220-201;Rnf220-202;Rnf220-207,Rnf220;Rnf220;Rnf220,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,4,117317524,117317713,190,*,190,13,0.478947368,1.193236715,0.068421053,3.62E-08,CpGisland,TRUE,U13,Hc-P
17689,cg16292832,0.00000826,0.00000169,4.887321657,0.00000164,gain,yes,-0.00000318,0.00000287,-1.106754626,0.269258107,neg,ns,0.001063658,0.000840762,1.265111415,0.206781528,pos,ns,0.68448826,0.00000188,0.0000289,0.065108787,0.948129351,pos,ns,0.020936058,Zic4,Zic4_threeUTR,9,91386827,91386876,91386827,91386828,50,+,CGGTAAACAAAACCCACGCGAATGGGCACTTGTACCCGATCATAATAAAA,3' UTR,9,91368970,91387793,18824,1,Zic4-204,17857,Zic4-204;Zic4-209;Zic4-205;Zic4-201;Zic4-202,Zic4;Zic4;Zic4;Zic4;Zic4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,18,55,22774,ENSMUSG00000036972,conserved gene and region,9,91386798,91386995,198,*,198,14,0.454545455,1.386,0.070707071,6.05E-09,CpGisland,TRUE,U13,Hc-P
16846,cg24007610,-0.00000062,0.000018,-0.034450483,0.972540099,loss,ns,-0.0000338,0.0000306,-1.106743638,0.269262851,neg,ns,0.009925868,0.008950766,1.10894073,0.26831531,pos,ns,0.571354547,-0.000097,0.000307816,-0.314968133,0.75299775,neg,ns,0.893743005,Diaph3,Diaph3_fiveUTR,14,86748957,86749006,86749005,86749006,50,-,CACTGTCAGCACTGTCGGCTGCTCAAATGATTTTTTAAGCAGAGCAGCCG,5' UTR,14,86655367,87141224,485858,2,Diaph3-201,392218,Diaph3-201;Diaph3-202;Diaph3-207;Diaph3-206;Diaph3-204,Diaph3;Diaph3;Diaph3;Diaph3;Diaph3,0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,11,56419,ENSMUSG00000022021,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22480,cg03334222,0.000249357,0.0000124,20.15269533,2.60E-58,gain,yes,-0.0000233,0.000021,-1.106686497,0.269287525,neg,ns,0.011495732,0.006158361,1.866686923,0.062889223,pos,ns,1.201423771,0.000245485,0.000211786,1.159119729,0.24729945,pos,ns,0.21118323,Trhde,Trhde_Promoter,10,114802556,114802605,114802556,114802557,50,+,CGCTCTGTCACACCAGACACCCACAGCCACAGAGGGGGTTGCTGAGCCGC,Promoter (<=1kb),10,114566167,114802307,236141,2,Trhde-203,-249,Trhde-201;Trhde-204;Trhde-203;Trhde-202,Trhde;Trhde;Trhde;Trhde,0;0;0;-1186,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,1,2,237553,ENSMUSG00000050663,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
23952,cg08706469,-0.0000219,0.0000074,-2.95538121,0.00336228,loss,ns,0.0000139,0.0000126,1.106663409,0.269297495,pos,ns,-0.001775893,0.003683197,-0.482160802,0.630031966,neg,ns,0.200637415,-0.00000312,0.000126665,-0.024644969,0.980354006,neg,ns,0.656052009,Hectd4,Hectd4_Exon,5,121304372,121304421,121304420,121304421,50,-,ATCAGACTGCCTCCAGGAATCATGATAAAGCTCAGGGAAATTTCTGGGCG,"Exon (Hectd4-201/Hectd4, exon 25 of 76)",5,121220219,121368577,148359,1,Hectd4-201,84153,Hectd4-201;Hectd4-207;Hectd4-203;Hectd4-205;Hectd4-202,Hectd4;Hectd4;Hectd4;Hectd4;Hectd4,0;0;0;0;-1309,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,8,269700,ENSMUSG00000042744,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23,cg24315543,0.00000365,0.00000134,2.718834786,0.006920238,gain,ns,-0.00000252,0.00000228,-1.106556813,0.26934353,neg,ns,-0.001177315,0.000668356,-1.761507084,0.079138341,neg,ns,1.101613056,0.00003,0.000023,1.306922978,0.192207505,pos,ns,0.020797633,Rab10,Rab10_fiveUTR,12,3309373,3309422,3309373,3309374,50,-,CGATCAGGAGCAGCTTGAAAAGCAGGTCGTACGTCTTCTTCGCCATTGGG,Promoter (<=1kb),12,3247428,3309969,62542,2,Rab10-201,547,Rab10-201,Rab10,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,3,19325,ENSMUSG00000020671,conserved gene but different region,12,3309325,3310215,891,*,891,114,0.708193042,1.022303187,0.127946128,5.29E-100,CpGisland,TRUE,U1,Pr-A
20909,cg00929113,0.0000164,0.00000466,3.526489437,0.000484714,gain,ns,0.00000877,0.00000792,1.106533406,0.269353639,pos,ns,0.00206063,0.0023216,0.887590272,0.375449303,pos,ns,0.425448698,0.0000522,0.0000798,0.654085192,0.513541845,pos,ns,0.044924522,Pax6,Pax6_Intron,2,105686951,105687000,105686951,105686952,50,+,CGTTTTGTTTCTCATTAAGGCGACATGAATAAGCGTCTAGTTGAAGGAGA,"Intron (Pax6-206/Pax6, intron 7 of 12)",2,105668900,105697364,28465,1,Pax6-206,18051,Pax6-206;Pax6-207;Pax6-210;Pax6-214;Pax6-208;Pax6-202;Pax6-205;Pax6-225;Pax6-204;Pax6-201;Pax6-203;Pax6-224;Pax6-219;Pax6-221;Pax6-213;Pax6-211;Pax6-222;Pax6-212;Pax6-215;Pax6-223;Pax6-209;Pax6-216,Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,78,18508,ENSMUSG00000027168,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
740,cg01079397.2,0.0000374,0.00000777,4.816962208,0.00000228,gain,ns,0.0000146,0.0000132,1.106530167,0.269355038,pos,ns,0.010488702,0.003869326,2.710731298,0.007087543,pos,ns,2.1495043,-0.000317844,0.000133066,-2.388619562,0.017509841,neg,ns,0.876553139,Nipbl,Nipbl_fiveUTR,15,8444226,8444275,8444274,8444275,50,+,TGGCTACGGCTCCTCTTCCGTCTCCTCAGTGCGGGGAACATGTAGAGCCG,Promoter (<=1kb),15,8290617,8444463,153847,2,Nipbl-201,188,Nipbl-201,Nipbl,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,36,71175,ENSMUSG00000022141,conserved gene and region,15,8443623,8444317,695,*,695,79,0.676258993,0.994277539,0.113669065,7.45E-65,CpGisland,TRUE,U1,Pr-A
14365,cg10901302,0.00000812,0.00000569,1.426907715,0.154612905,gain,ns,0.0000107,0.00000967,1.106487798,0.269373338,pos,ns,0.000417668,0.002833221,0.147417924,0.88289799,pos,ns,0.054089472,0.0000373,0.0000974,0.382806586,0.70212552,pos,ns,0.042539996,Smad7,Smad7_Intron,18,75370720,75370769,75370768,75370769,50,-,CCTCTTTTGTTTATCTGACAGCTAAATATCAAGGCAATCACCGCCTCGCG,"Intron (Smad7-201/Smad7, intron 1 of 3)",18,75367529,75395935,28407,1,Smad7-201,3191,Smad7-201;Smad7-202;Smad7-205;Smad7-204;Smad7-203,Smad7;Smad7;Smad7;Smad7;Smad7,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,19,17131,ENSMUSG00000025880,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
15248,cg01324452,0.00000298,0.00000333,0.895208601,0.371370145,gain,ns,-0.00000625,0.00000565,-1.10636816,0.269425015,neg,ns,-0.003317052,0.00165536,-2.003825078,0.045958626,neg,ns,1.337632961,0.0000827,0.0000569,1.453363846,0.147134306,pos,ns,0.894549753,Tmem259,Tmem259_Exon,10,79978431,79978480,79978479,79978480,50,-,GGAAGGCGATGGCCATGTTCATCTCCAGCATCTGCAGCAGGTCCACTGCG,Promoter (<=1kb),10,79974948,79978773,3826,2,Tmem259-205,293,Grin3b-201;Grin3b-203;Grin3b-202;Tmem259-205;Tmem259-204;Tmem259-201;Tmem259-202;Tmem259-203,Grin3b;Grin3b;Grin3b;Tmem259;Tmem259;Tmem259;Tmem259;Tmem259,7716;4694;4022;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,216157,ENSMUSG00000013858,conserved gene and region,10,79978479,79978597,119,*,119,10,0.68907563,0.709600477,0.084033613,0.000000335,CpGisland,TRUE,U10,Tr-S
19662,cg18743551,-0.00000527,0.00000151,-3.497717121,0.000537886,loss,ns,-0.00000283,0.00000256,-1.106328597,0.269442105,neg,ns,0.001283025,0.000749666,1.711460878,0.087996288,pos,ns,1.055535649,-0.0000503,0.0000258,-1.950152004,0.052059113,neg,ns,0.95327213,Sec31a,Sec31a_Exon,5,100373431,100373480,100373479,100373480,50,+,TTCCAGGAGGCAGTGCATAAGCTGAAGATGATGGTGGAGCTCCTGGTCCG,"Exon (Sec31a-201/Sec31a, exon 22 of 28)",5,100361649,100378913,17265,2,Sec31a-206,5433,Sec31a-206;Sec31a-201;Sec31a-205;Sec31a-210;Sec31a-211;Sec31a-208;Sec31a-202,Sec31a;Sec31a;Sec31a;Sec31a;Sec31a;Sec31a;Sec31a,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,69162,ENSMUSG00000035325,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11689,cg09719509,-0.00000314,0.00000129,-2.433968049,0.015498809,loss,ns,0.00000243,0.00000219,1.106171804,0.269509845,pos,ns,0.001030798,0.000642928,1.603286639,0.10988973,pos,ns,0.959042893,-0.0000317,0.0000221,-1.431724808,0.153230025,neg,ns,0.040511424,Ddit4,Ddit4_Exon,10,59951329,59951378,59951329,59951330,50,+,CGAAGCCACTGTTGCTGCTGTCCAGGGACTCGCAGTCCGAGCTCTCCAGG,Promoter (<=1kb),10,59949669,59951834,2166,2,Ddit4-201,456,Ddit4-201,Ddit4,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,74747,ENSMUSG00000020108,conserved gene and region,10,59951140,59952128,989,*,989,80,0.654196158,0.763264519,0.080889788,5.10E-53,CpGisland,TRUE,U1,Pr-A
22196,cg19404302,-0.0000101,0.00000568,-1.783965037,0.075407391,loss,ns,0.0000107,0.00000964,1.105987169,0.269589628,pos,ns,0.003154536,0.002825502,1.116451458,0.265093546,pos,ns,0.576600845,-0.000130121,0.0000972,-1.339123364,0.181511563,neg,ns,0.875727088,Gm26897,Gm26897_Promoter,5,111725132,111725181,111725132,111725133,50,+,CGTTGCATGCAACATTGATTGTCTGTTATATTACATTTATTAAGAAGTGA,Promoter (8-9kb),5,111733924,111734574,651,1,Gm26897-201,-8743,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,23,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17159,cg08784982,-0.0000102,0.00000515,-1.982577358,0.048297186,loss,ns,0.00000967,0.00000874,1.105978997,0.269593159,pos,ns,-0.000543547,0.002561356,-0.212210807,0.832082038,neg,ns,0.079833853,-0.0000618,0.0000881,-0.701211024,0.483697361,neg,ns,0.574816051,Rps6-ps2,Rps6-ps2_Intergenic_downstream,8,88903002,88903051,88903002,88903003,50,-,CGTTATTAGGGTGTCCAGGAAATTATAGCTTATGTCTATTAGTTCTTTCA,Distal Intergenic,8,88806391,88807137,747,1,Rps6-ps2-201,96660,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,14,675985,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22049,cg19516212,-0.00000112,0.000000616,-1.817547924,0.070098517,loss,ns,-0.00000116,0.00000105,-1.105977097,0.269593981,neg,ns,-0.000648222,0.000306517,-2.114799268,0.035244844,neg,ns,1.452904405,0.0000175,0.0000105,1.658393836,0.098249439,pos,ns,0.018502102,Map2k6,Map2k6_fiveUTR,11,110399081,110399130,110399081,110399082,50,+,CGCGCCCTTCGCAGGAAGGACGTCTGCGCACTAAGATACTCAGTTCCAAG,Promoter (<=1kb),11,110399122,110513641,114520,1,Map2k6-201,0,Map2k6-201;Map2k6-202;Map2k6-204,Map2k6;Map2k6;Map2k6,0;0;-129,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,5,26399,ENSMUSG00000020623,conserved gene but different region,11,110398916,110399108,193,*,193,14,0.533678757,1.03051106,0.07253886,4.33E-09,CpGisland,TRUE,U2,Pr-W
17031,cg20331456,0.000055,0.00000561,9.798303325,6.35E-20,gain,yes,-0.0000105,0.00000954,-1.105957969,0.269602247,neg,ns,0.004921201,0.002793844,1.76144459,0.07914893,pos,ns,1.10155495,0.000103287,0.0000961,1.075011308,0.283205649,pos,ns,0.888846322,Mllt3,Mllt3_Intron,4,88017602,88017651,88017650,88017651,50,+,GGGTACTGCACCCTGTCTCTTTAAATTCCAGGCCTGCCCCATTTCCCACG,"Intron (Mllt3-201/Mllt3, intron 2 of 10)",4,87769925,88033364,263440,2,Mllt3-201,15713,Mllt3-201;Mllt3-203;Mllt3-205;Mllt3-206,Mllt3;Mllt3;Mllt3;Mllt3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,13,70122,ENSMUSG00000028496,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23579,cg16565701,0.0000055,0.00000235,2.340747535,0.019878857,gain,ns,0.00000441,0.00000399,1.105848818,0.269649422,pos,ns,0.002379555,0.001168475,2.036462574,0.042553496,pos,ns,1.371064755,-0.0000544,0.0000402,-1.35407287,0.176699384,neg,ns,0.056574633,Gli2,Gli2_Intron,1,119051749,119051798,119051797,119051798,50,+,TGAGCATGCCAATACAATATTTGTTTAAACACTATTTTATGCTGCTTGCG,"Intron (Gli2-201/Gli2, intron 1 of 13)",1,118834132,119053619,219488,2,Gli2-201,1821,Gli2-201;Gli2-203;Gli2-204;Gli2-205;Gli2-206;Gli2-208;Gli2-207;Gli2-209,Gli2;Gli2;Gli2;Gli2;Gli2;Gli2;Gli2;Gli2,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,4,14633,ENSMUSG00000048402,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
5411,cg22810609,-0.000018,0.00000771,-2.336670463,0.020093047,loss,ns,0.0000145,0.0000131,1.105827068,0.269658823,pos,ns,0.004299897,0.003839092,1.120029483,0.263568191,pos,ns,0.579107004,-0.000235262,0.000132026,-1.781933727,0.075738808,neg,ns,0.540139083,Cnr1,Cnr1_Intergenic_upstream,4,33840221,33840270,33840269,33840270,50,-,TCTCATTATTCCTGCCTCAGGATGTGGTGGACCACCATCTGCAGCTGCCG,Distal Intergenic,4,33924593,33935316,10724,1,Cnr1-203,-84372,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,3,12801,ENSMUSG00000044288,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20073,cg08910714,-0.00000443,0.00000176,-2.515540252,0.012390305,loss,ns,0.00000331,0.00000299,1.105704348,0.26971187,pos,ns,0.000187183,0.000875878,0.213709446,0.830914133,pos,ns,0.080443854,-0.0000129,0.0000301,-0.428617773,0.668499081,neg,ns,0.965471537,Stim1,Stim1_Exon,7,102428761,102428810,102428809,102428810,50,-,CTGTTGACCCTAGATGCTGCCTGGCTGATGGGGCGTAGGTTCAGTGACCG,"Exon (Stim1-207/Stim1, exon 4 of 5)",7,102267806,102437318,169513,1,Stim1-201,160955,Stim1-201;Stim1-202;Stim1-209;Stim1-206;Stim1-207;Stim1-205;Stim1-204,Stim1;Stim1;Stim1;Stim1;Stim1;Stim1;Stim1,0;0;0;2788;0;2209;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,6,20866,ENSMUSG00000030987,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26922,cg15323542,0.00000347,0.0000116,0.298377265,0.765615134,gain,ns,-0.0000218,0.0000197,-1.105683754,0.269720773,neg,ns,-0.010261533,0.005780105,-1.775319477,0.076826237,neg,ns,1.114490438,0.000489528,0.000198777,2.462695222,0.014333155,pos,ns,0.867140117,Actrt2,Actrt2_Intergenic_upstream,4,154710054,154710103,154710054,154710055,50,+,CGGAAATTTGTTTAGTCCTATAAAAGCACAGGCCGTATATCAATAGATGA,Distal Intergenic,4,154666433,154667867,1435,2,Actrt2-201,-42187,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,3,73353,ENSMUSG00000051276,conserved gene but different region,4,154710002,154710203,202,*,202,16,0.504950495,1.243076923,0.079207921,6.59E-11,CpGisland,TRUE,U11,Tr-P
3892,cg14471976,0.00000306,0.00000184,1.664290872,0.097064726,gain,ns,0.00000346,0.00000313,1.10567318,0.269725344,pos,ns,0.001640837,0.000916394,1.790536834,0.074343315,pos,ns,1.128758078,-0.0000868,0.0000315,-2.755041376,0.006215431,neg,ns,0.948908019,5730522E02Rik,5730522E02Rik_Intron,11,25693548,25693597,25693548,25693549,50,+,CGGCTGCTACATTAACAACGGGCTGCATCAGCACTCAAATCTTATCTTGT,"Intron (5730522E02Rik-202/5730522E02Rik, intron 2 of 5)",11,25617668,26210569,592902,2,5730522E02Rik-202,516972,5730522E02Rik-202;5730522E02Rik-201;5730522E02Rik-208,5730522E02Rik;5730522E02Rik;5730522E02Rik,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,90,70626,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2797,cg19169532,-0.0000012,0.00000889,-0.134430222,0.89314962,loss,ns,0.0000167,0.0000151,1.105503787,0.26979858,pos,ns,-0.002443611,0.004425194,-0.552204138,0.581206388,neg,ns,0.235669621,0.0000566,0.000152182,0.372103721,0.710069862,pos,ns,0.511246457,Ccdc178,Ccdc178_threeUTR,18,21811387,21811436,21811387,21811388,50,+,CGTTCATGGAAGTGTGAAATGGCAAACAGGTGAATGTCCAATTACACTGT,3' UTR,18,21810893,22171442,360550,2,Ccdc178-204,360006,Ccdc178-204;Ccdc178-201;Ccdc178-202,Ccdc178;Ccdc178;Ccdc178,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,21,70950,ENSMUSG00000024306,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4963,cg15258337,0.000000589,0.0000026,0.226251217,0.821155143,gain,ns,0.00000489,0.00000442,1.105328566,0.269874351,pos,ns,0.00284734,0.001295251,2.198292913,0.028667096,pos,ns,1.542616297,-0.00000513,0.0000445,-0.115270304,0.908305504,neg,ns,0.063538476,Pknox1,Pknox1_fiveUTR,17,31564858,31564907,31564906,31564907,50,-,GCTTGTCAGTGTGATGAAGATTGGCACCCAGGTAAGCTGTCACTCAACCG,Promoter (<=1kb),17,31564862,31605492,40631,1,Pknox1-202,0,Pknox1-201;Pknox1-206;Pknox1-212;Pknox1-209;Pknox1-202;Pknox1-208,Pknox1;Pknox1;Pknox1;Pknox1;Pknox1;Pknox1,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,8,8,18771,ENSMUSG00000006705,conserved gene but different region,17,31564906,31565621,716,*,716,118,0.791899441,1.06992883,0.164804469,2.89E-119,CpGisland,TRUE,U1,Pr-A
15420,cg21256163,0.0000489,0.0000108,4.516238618,0.00000896,gain,ns,-0.0000203,0.0000184,-1.10513446,0.269958305,neg,ns,0.013671883,0.005385983,2.538419343,0.011624501,pos,ns,1.934625663,-0.000696478,0.000185223,-3.760204725,0.000202906,neg,ns,0.547163519,Tnrc6b,Tnrc6b_Exon,15,80876380,80876429,80876428,80876429,50,-,CATCGCCACCAGTCAATGGTGGCAACAATGCCAAAAGGGTGGCAGTGCCG,"Exon (Tnrc6b-201/Tnrc6b, exon 7 of 25)",15,80711313,80941085,229773,1,Tnrc6b-201,165067,Tnrc6b-201;Tnrc6b-204;Tnrc6b-207;Tnrc6b-208,Tnrc6b;Tnrc6b;Tnrc6b;Tnrc6b,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,20,24,213988,ENSMUSG00000047888,conserved gene and region,15,80876428,80876567,140,*,140,14,0.657142857,0.933333333,0.1,5.38E-11,CpGisland,TRUE,U10,Tr-S
22421,cg07335109,-0.000000855,0.00000069,-1.240165522,0.215852044,loss,ns,0.00000129,0.00000117,1.105118559,0.269965184,pos,ns,0.001068261,0.000343267,3.112043611,0.002031027,pos,ns,2.692284221,-0.000038,0.0000118,-3.223034908,0.001403434,neg,ns,0.024694161,Fst,Fst_Promoter,13,114460253,114460302,114460301,114460302,50,-,TACAATGGGATCTGTCTGGACAGACTATAATAGATCCCGAAATACAGCCG,Promoter (1-2kb),13,114452290,114458951,6662,2,Fst-202,-1351,Fst-202;Fst-201;Fst-206;Fst-205,Fst;Fst;Fst;Fst,0;0;-4017;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,4,7,14313,ENSMUSG00000021765,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
8334,cg26377888,-0.00000219,0.0000118,-0.185972974,0.852587586,loss,ns,-0.0000221,0.00002,-1.105091479,0.269976898,neg,ns,0.0000496,0.005866696,0.008452968,0.993261025,pos,ns,0.002936606,-0.00026926,0.000201755,-1.334589277,0.182990208,neg,ns,0.498106761,Zeb2,Zeb2_Intron,2,45024587,45024636,45024635,45024636,50,-,AGATTACACCGTGCATATCTGCTCATAATATGATCTTTGTATAATCCGCG,"Intron (Zeb2-212/Zeb2, intron 3 of 10)",2,44983632,45117395,133764,2,Zeb2-212,92759,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-227;Zeb2-216;Zeb2-229;Zeb2-218;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24034,cg12240220,-0.0000937,0.000013,-7.206639864,4.39E-12,loss,yes,0.0000244,0.0000221,1.104881281,0.270067837,pos,ns,0.000273618,0.006471604,0.042279849,0.966302828,pos,ns,0.01488675,-0.000399419,0.000222558,-1.794674746,0.07367967,neg,ns,0.73888427,Cux2,Cux2_Promoter,5,122051415,122051464,122051415,122051416,50,+,CGTGCTTTGAGGCAATTAAAGTTTTTAATGTAATGTAAATAATTGTTTCA,Promoter (1-2kb),5,121884754,122050102,165349,2,Cux2-207,-1313,Cux2-202;Cux2-201;Cux2-207;Cux2-203,Cux2;Cux2;Cux2;Cux2,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,1,21,13048,ENSMUSG00000042589,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3458,cg07680280,-0.0000124,0.00000605,-2.058147249,0.040411651,loss,ns,-0.0000113,0.0000103,-1.104832222,0.270089064,neg,ns,-0.003842066,0.003008744,-1.276966468,0.202569734,neg,ns,0.693425443,0.0000766,0.00010347,0.740467282,0.45957696,pos,ns,0.845735919,Bcl11a,Bcl11a_Intron,11,24097229,24097278,24097277,24097278,50,+,TTCACAGCCTTTGGTCTCCGGCCAACTGCATGCATAATTGATTCCACACG,"Intron (Bcl11a-201/Bcl11a, intron 2 of 4)",11,24078056,24173194,95139,1,Bcl11a-201,19173,Bcl11a-201;Bcl11a-203;Bcl11a-202;Bcl11a-204,Bcl11a;Bcl11a;Bcl11a;Bcl11a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,98,14025,ENSMUSG00000000861,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17306,cg13234286,0.00000591,0.00000574,1.029988067,0.30381854,gain,ns,0.0000108,0.00000974,1.104817132,0.270095594,pos,ns,0.003263937,0.00285452,1.143427348,0.253743422,pos,ns,0.595605208,-0.0000141,0.0000982,-0.143692643,0.885836542,neg,ns,0.870423753,Dmrta1,Dmrta1_Intergenic_upstream,4,89568322,89568371,89568370,89568371,50,-,TTCTGACTAAAAGTTAATTAACTATTTTGCCTCAGCAAGCCAATTTGTCG,Distal Intergenic,4,89679436,89691919,12484,1,Dmrta1-202,-111114,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,4,242523,ENSMUSG00000043753,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17014,cg08420071,-0.00000156,0.00000266,-0.588131976,0.556871923,loss,ns,-0.00000498,0.00000451,-1.104722117,0.270136711,neg,ns,-0.003820843,0.001321645,-2.890974177,0.004111755,neg,ns,2.385972768,0.0000958,0.0000455,2.106842276,0.035934476,pos,ns,0.899511826,Prcc,Prcc_Exon,3,87870049,87870098,87870049,87870050,50,+,CGGGAGAAGGCATGGGGCAGGAGCAACCTGTTAGTCTCTTTCACAGTCAG,"Exon (Prcc-201/Prcc, exon 3 of 7)",3,87858903,87885608,26706,2,Prcc-201,15510,Prcc-201,Prcc,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,94315,ENSMUSG00000004895,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21832,cg19533725,-0.0000236,0.00000725,-3.255505313,0.001257137,loss,ns,0.0000136,0.0000123,1.10448565,0.270239057,pos,ns,-0.000689682,0.003609093,-0.191095645,0.848575754,neg,ns,0.071309382,0.000134381,0.000124116,1.082701234,0.279782488,pos,ns,0.861690017,Lmo1,Lmo1_Intergenic_upstream,7,109231879,109231928,109231927,109231928,50,-,TACTCACTAATCTGTTTGCTTATTTGGAATAATTGGGTCGGCTGCCAGCG,Distal Intergenic,7,109138675,109175207,36533,2,Lmo1-202,-56721,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,34,66,109594,ENSMUSG00000036111,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
738,cg14206958,-0.000000493,0.00000053,-0.929846777,0.353173921,loss,ns,-0.000000995,0.000000901,-1.10442291,0.270266217,neg,ns,0.00027688,0.000263899,1.049191267,0.294907359,pos,ns,0.530314391,-0.00000931,0.00000908,-1.025927074,0.30572582,neg,ns,0.012888781,Nipbl,Nipbl_Promoter,15,8443763,8443812,8443763,8443764,50,+,CGCTCAGCCCGGAGCTCTCCTAATCCCCGAGCTCAAGTAGATTCCGCTGG,Promoter (<=1kb),15,8290617,8444463,153847,2,Nipbl-201,651,Nipbl-201,Nipbl,0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,5,36,71175,ENSMUSG00000022141,conserved gene and region,15,8443623,8444317,695,*,695,79,0.676258993,0.994277539,0.113669065,7.45E-65,CpGisland,TRUE,U1,Pr-A
25355,cg17386375,-0.000000303,0.00000235,-0.129189245,0.897291684,loss,ns,-0.0000044,0.00000399,-1.104307442,0.270316207,neg,ns,-0.001050629,0.001168453,-0.899162731,0.369263879,neg,ns,0.432663173,0.0000331,0.0000402,0.823862736,0.410650942,pos,ns,0.95688241,Grin2b,Grin2b_Exon,6,135772351,135772400,135772351,135772352,50,+,CGGAGTTGTTAAACACCAGACCCCAGAGCAACCAAATAGCTTTGCCGATG,"Exon (Grin2b-201/Grin2b, exon 10 of 14)",6,135713233,136173125,459893,2,Grin2b-201,400725,Grin2b-201;Grin2b-202,Grin2b;Grin2b,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,5,14812,ENSMUSG00000030209,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15721,cg21098898,-0.00000375,0.00000136,-2.760513143,0.006114758,loss,ns,0.00000255,0.00000231,1.104229361,0.270350014,pos,ns,0.000765349,0.000676161,1.13190431,0.258549466,pos,ns,0.587456354,-0.000023,0.0000233,-0.988320258,0.323766592,neg,ns,0.044488983,Phip,Phip_Intron,9,82974423,82974472,82974471,82974472,50,+,CGTATCTTTATTTCTAGCACATTAACAAAATATCACAAATAAATTGTCCG,"Intron (Phip-201/Phip, intron 4 of 39)",9,82866159,82975516,109358,2,Phip-201,1044,Phip-201;Phip-207;Phip-204;Phip-210;Phip-205;Phip-215,Phip;Phip;Phip;Phip;Phip;Phip,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,13,83946,ENSMUSG00000032253,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
13291,cg00101491,-0.00000528,0.00000209,-2.530016669,0.011900708,loss,ns,0.00000392,0.00000355,1.104133558,0.270391499,pos,ns,0.000114591,0.001039188,0.110269577,0.912266936,pos,ns,0.039878065,0.0000105,0.0000357,0.293491385,0.769342968,pos,ns,0.949140759,Gm44690,Gm44690_Intergenic_upstream,7,70003904,70003953,70003952,70003953,50,-,CTGATTTGCAGCAAATTTCCACTTATTTTCCAAAAGTATTTACCTTGCCG,Distal Intergenic,7,69883979,69884360,382,2,Gm44690-201,-119593,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,15,24,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
691,cg09985959,0.0000177,0.00000594,2.981433779,0.003096359,gain,ns,-0.0000111,0.0000101,-1.104119313,0.270397667,neg,ns,-0.002955972,0.002955623,-1.000118366,0.318033242,neg,ns,0.497527483,0.0000367,0.000101644,0.361303794,0.718118472,pos,ns,0.907927879,Adam22,Adam22_Exon,5,8095057,8095106,8095057,8095058,50,-,CGACAGAAAAGCAGACCTCTTCTTAGAACTAGATGCTGAGTTTGTGCTGA,"Exon (Adam22-204/Adam22, exon 27 of 31)",5,8072352,8367982,295631,2,Adam22-202,272876,Adam22-202;Adam22-204;Adam22-206;Adam22-203;Adam22-207;Adam22-209;Adam22-218;Adam22-223;Adam22-208;Adam22-210;Adam22-211;Adam22-212;Adam22-213;Adam22-215;Adam22-216;Adam22-219;Adam22-220;Adam22-221;Adam22-222;Adam22-201;Adam22-224,Adam22;Adam22;Adam22;Adam22;Adam22;Adam22;Adam22;Adam22;Adam22;Adam22;Adam22;Adam22;Adam22;Adam22;Adam22;Adam22;Adam22;Adam22;Adam22;Adam22;Adam22,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,11496,ENSMUSG00000040537,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22533,cg12712768,0.0000703,0.0000196,3.591917409,0.000381578,gain,ns,-0.0000367,0.0000332,-1.104060896,0.270422966,neg,ns,0.018592067,0.0097383,1.909169704,0.057163285,pos,ns,1.242882824,-0.000792796,0.000334899,-2.367267188,0.018533908,neg,ns,0.469443243,Hnf1a,Hnf1a_fiveUTR,5,114971055,114971104,114971103,114971104,50,+,TTCTGTTTACATTGGAGCTGGGGAAATTCTCCAAGGTTCATATTTATCCG,Promoter (<=1kb),5,114948980,114971067,22088,2,Hnf1a-201,0,Hnf1a-201;Hnf1a-203;Hnf1a-202;Hnf1a-204,Hnf1a;Hnf1a;Hnf1a;Hnf1a,0;-211;-211;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,1,21405,ENSMUSG00000029556,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
3184,cg01528792,0.00000199,0.00000282,0.705122018,0.481263761,gain,ns,-0.00000529,0.00000479,-1.103975018,0.270460159,neg,ns,-0.001198765,0.001402655,-0.854639659,0.393410647,neg,ns,0.40515389,-0.0000526,0.0000482,-1.091165962,0.276047222,neg,ns,0.030137811,Klf9,Klf9_Exon,19,23142171,23142220,23142171,23142172,50,+,CGAAAAGAGGCACAAGTGCCCCTACAGTGGCTGTGGGAAAGTCTATGGAA,Promoter (<=1kb),19,23141226,23168134,26909,1,Klf9-201,945,Klf9-201;Klf9-202,Klf9;Klf9,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,13,16601,ENSMUSG00000033863,conserved gene and region,19,23141183,23142172,990,*,990,120,0.684848485,1.033789605,0.121212121,5.63E-102,CpGisland,TRUE,U1,Pr-A
3740,cg25832403,-0.0000422,0.0000139,-3.044607681,0.002529594,loss,ns,0.000026,0.0000236,1.103896883,0.270494002,pos,ns,-0.00791145,0.006900841,-1.146447234,0.252494285,neg,ns,0.597748448,-0.000219458,0.000237319,-0.924738149,0.355821399,neg,ns,0.652035181,5730522E02Rik,5730522E02Rik_Intergenic_downstream,11,25190764,25190813,25190812,25190813,50,+,CTAATTCAGTCTTCGGCACATTTGCTACTGTTTTTTAGAAGCCAGAGGCG,Distal Intergenic,11,25602816,25620098,17283,2,5730522E02Rik-205,429285,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,21,90,70626,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11605,cg19707697,-0.0000141,0.00000877,-1.607732345,0.108911783,loss,ns,0.0000164,0.0000149,1.103891548,0.270496313,pos,ns,-0.017960407,0.004362572,-4.116931219,0.0000493,neg,ns,4.307310888,0.000513282,0.000150028,3.421231,0.000706983,pos,ns,0.259554239,Emx2,Emx2_Promoter,19,59457392,59457441,59457392,59457393,50,-,CGGCTGATGAATAGATAATAGATCTTTAACCACCAATAAACAGAGAGCAG,Promoter (<=1kb),19,59458372,59465357,6986,1,Emx2-201,-980,Emx2-201;Emx2-202,Emx2;Emx2,0;-2078,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,1,23,13797,ENSMUSG00000043969,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
6625,cg15254020,-0.00000521,0.00000471,-1.105572109,0.26976904,loss,ns,0.00000884,0.00000801,1.10385298,0.270513019,pos,ns,0.005754207,0.002345279,2.45352743,0.014696419,pos,ns,1.832788477,-0.00020564,0.0000807,-2.549655819,0.01126408,neg,ns,0.88488895,Dennd1a,Dennd1a_Intron,2,37832524,37832573,37832524,37832525,50,+,CGAAGACCAACTGCTGGAAAATCTCACTGTCAAATCCTCAAGGACATTGT,"Intron (Dennd1a-201/Dennd1a, intron 19 of 21)",2,37798991,38287375,488385,2,Dennd1a-201,454802,Dennd1a-201;Dennd1a-206;Dennd1a-207,Dennd1a;Dennd1a;Dennd1a,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,46,227801,ENSMUSG00000035392,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15606,cg08464821,0.00000155,0.000000767,2.016311968,0.044629542,gain,ns,0.00000144,0.0000013,1.103839157,0.270519007,pos,ns,0.000561665,0.000381585,1.471925194,0.142055528,pos,ns,0.847541863,-0.0000156,0.0000131,-1.192442195,0.233999856,neg,ns,0.00681199,Irs1,Irs1_Exon,1,82290298,82290347,82290346,82290347,50,-,GGGGGATCGAGCGTTTGGGGGCGCTCGACTTGTGCCGCCACTTCTTCTCG,"Exon (Irs1-201/Irs1, exon 1 of 2)",1,82233101,82291416,58316,2,Irs1-201,1069,Irs1-201,Irs1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,16367,ENSMUSG00000055980,conserved gene and region,1,82290270,82290502,233,*,233,23,0.622317597,1.019984774,0.098712446,1.06E-17,CpGisland,TRUE,U1,Pr-A
16926,cg10206959,0.0000874,0.0000127,6.900661705,2.92E-11,gain,yes,-0.0000237,0.0000215,-1.103532994,0.270651655,neg,ns,0.017436203,0.006301508,2.766989139,0.005997517,pos,ns,2.222028489,-0.000503291,0.000216708,-2.322433619,0.020856934,neg,ns,0.182365456,Gm9540,Gm9540_Intergenic_downstream,9,87444019,87444068,87444019,87444020,50,-,CGTCCAGGGGCCAAGGGTCAGTTTCCTGTTTGGATAAGGGTGAGTTTAAA,Distal Intergenic,9,87394250,87394727,478,1,Gm9540-201,49818,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,7,671706,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
814,cg13426955,-0.00000333,0.00000104,-3.197738416,0.001528173,loss,ns,0.00000195,0.00000177,1.103401346,0.270708705,pos,ns,0.00048993,0.000519013,0.943965304,0.345922488,pos,ns,0.461021204,-0.00000938,0.0000178,-0.525275928,0.599766873,neg,ns,0.040619547,1810013L24Rik,1810013L24Rik_Exon,16,8831322,8831371,8831370,8831371,50,+,CCGAGTGTGTCAGCAGCCAGGACTTTCTCTCTGGGTCCCCTTCCAAAACG,"Exon (1810013L24Rik-201/1810013L24Rik, exon 2 of 4)",16,8830100,8858922,28823,1,1810013L24Rik-201,1222,1810013L24Rik-201;1810013L24Rik-202,1810013L24Rik;1810013L24Rik,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,18,19,69053,ENSMUSG00000022507,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
6503,cg23212048,-0.0000281,0.0000121,-2.329320227,0.020484309,loss,ns,-0.0000226,0.0000205,-1.103320933,0.270743558,neg,ns,0.017552215,0.0060007,2.925027947,0.003698364,pos,ns,2.431990371,-0.000334644,0.000206364,-1.621623925,0.105900492,neg,ns,0.486920515,Spata5,Spata5_Intron,3,37557028,37557077,37557028,37557029,50,-,CGATGTTCAGCTGTCTGGGCTTAGGCCCAGTATTTGATTTATACATTATT,"Intron (Spata5-202/Spata5, intron 15 of 15)",3,37419896,37579096,159201,1,Spata5-202,137132,Gm12564-201;Spata5-202;Spata5-201;Spata5-209;Spata5-210,Gm12564;Spata5;Spata5;Spata5;Spata5,-525;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,57815,ENSMUSG00000027722,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7972,cg25950871,0.0000434,0.00000477,9.10028465,1.12E-17,gain,yes,-0.00000893,0.0000081,-1.103303645,0.270751051,neg,ns,0.003143741,0.002371764,1.325486572,0.185985809,pos,ns,0.730520192,-0.0000426,0.0000816,-0.52193436,0.602088758,neg,ns,0.15509282,Pax2,Pax2_Intergenic_upstream,19,44671234,44671283,44671282,44671283,50,+,ATCTGTCATCAGGACCAGAGGCAGTCATAAATTATATGGGAGCGCGTGCG,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-84762,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,19,44671276,44671313,38,*,38,6,0.684210526,1.425,0.157894737,0.00000546,CpGisland,TRUE,U13,Hc-P
14728,cg14491811,-0.00000209,0.0000024,-0.871653502,0.384071993,loss,ns,0.0000045,0.00000407,1.103290861,0.270756592,pos,ns,0.002665954,0.001193629,2.233486752,0.026230091,pos,ns,1.581200208,-0.000111559,0.000041,-2.717713967,0.006943164,neg,ns,0.946637569,2210408I21Rik,2210408I21Rik_Intron,13,77476700,77476749,77476748,77476749,50,+,AAACAGAAGCAGTTTATACTGACAGCTTAAATATCTTTATCTAGCATACG,"Intron (2210408I21Rik-201/2210408I21Rik, intron 19 of 19)",13,77135540,77613784,478245,1,2210408I21Rik-201,341160,2210408I21Rik-201,2210408I21Rik,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,19,20,72371,ENSMUSG00000071252,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26713,cg08040472,-0.0000213,0.0000154,-1.386577011,0.166567108,loss,ns,0.0000288,0.0000261,1.103230972,0.270782551,pos,ns,-0.001482817,0.007647616,-0.193892756,0.846386844,neg,ns,0.072431096,-0.000146191,0.000263001,-0.555857558,0.578709185,neg,ns,0.745488389,Huwe1,Huwe1_Intron,X,151802965,151803014,151803013,151803014,50,-,GGCTCTAGACACCTAGATCGGGGGCGGAGGCAGTTTTCAGGACATGGCCG,"Intron (Huwe1-214/Huwe1, intron 2 of 5)",20,151800883,151804511,3629,1,Huwe1-214,2082,Huwe1-204;Huwe1-214;Huwe1-221;Huwe1-222;Huwe1-217;Huwe1-210;Huwe1-201;Huwe1-207;Huwe1-206;Huwe1-223;Huwe1-212;Huwe1-216;Huwe1-218,Huwe1;Huwe1;Huwe1;Huwe1;Huwe1;Huwe1;Huwe1;Huwe1;Huwe1;Huwe1;Huwe1;Huwe1;Huwe1,2158;0;0;-229;-247;-313;0;-333;-333;-644;-648;-648;-648,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,28,59026,ENSMUSG00000025261,conserved gene and region,X,151802983,151803802,820,*,820,82,0.612195122,1.113245033,0.1,2.85E-62,CpGisland,TRUE,U9,En-Pp
19223,cg23270774,0.0000275,0.0000176,1.557043626,0.120480413,gain,ns,-0.0000331,0.00003,-1.103058483,0.270857327,neg,ns,-0.010721127,0.008781724,-1.220845302,0.22307235,neg,ns,0.651554257,0.000666243,0.000302003,2.20608121,0.028111531,pos,ns,0.470979292,Wnt1,Wnt1_Intergenic_downstream,15,98798426,98798475,98798474,98798475,50,-,TCTGTGACTCTGGCCTGGCCAACAATGAGGCATTCACTCCTGGGACCTCG,Distal Intergenic,15,98789857,98793837,3981,1,Wnt1-201,8618,Wnt1-201,Wnt1,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,12,22408,ENSMUSG00000022997,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
3484,cg17207926,-0.00000273,0.00000398,-0.68521796,0.493718434,loss,ns,-0.00000745,0.00000676,-1.102929481,0.270913261,neg,ns,-0.000237766,0.001980147,-0.120075014,0.904501508,neg,ns,0.043590705,-0.0000689,0.0000681,-1.011058727,0.312776816,neg,ns,0.886990736,Bcl11a,Bcl11a_Exon,11,24163799,24163848,24163847,24163848,50,-,TTCTGCGGCAAGACGTTCAAATTTCAGAGCAACCTGGTGGTGCACCGGCG,"Exon (Bcl11a-201/Bcl11a, exon 4 of 5)",11,24078056,24173194,95139,1,Bcl11a-201,85743,Bcl11a-201;Bcl11a-203;Bcl11a-202;Bcl11a-204;Bcl11a-206,Bcl11a;Bcl11a;Bcl11a;Bcl11a;Bcl11a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,51,98,14025,ENSMUSG00000000861,conserved gene but different region,11,24163725,24163848,124,*,124,9,0.612903226,0.894230769,0.072580645,0.00000547,CpGisland,TRUE,U10,Tr-S
12425,cg13376897,-0.0000705,0.0000123,-5.715125897,2.57E-08,loss,yes,0.0000231,0.000021,1.102862449,0.270942328,pos,ns,-0.021117265,0.006140838,-3.438824328,0.000664183,neg,ns,3.177712007,0.000440663,0.000211183,2.086643456,0.037737234,pos,ns,0.770429003,Fign,Fign_Intergenic_upstream,2,64172613,64172662,64172613,64172614,50,-,CGAGCAGCGAGGCATGCTGCTTACCAGCAATGACTTTGATAAATAACTAG,Distal Intergenic,2,63977337,64098038,120702,2,Fign-201,-74624,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,84,60344,ENSMUSG00000075324,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22932,cg24288746,0.000023,0.0000193,1.191870326,0.234223719,gain,ns,0.0000361,0.0000327,1.102768291,0.270983162,pos,ns,0.005032197,0.009585914,0.524957467,0.599987979,pos,ns,0.22185745,-0.000294114,0.000329659,-0.892175973,0.372990614,neg,ns,0.705223019,Isl1,Isl1_threeUTR,13,116298667,116298716,116298667,116298668,50,-,CGCTTGTGGCAAAATAGAGGTAACCTTGTTGCAATGCTTTATAAGTTGGT,3' UTR,13,116298281,116309689,11409,2,Isl1-201,10973,Isl1-201;Isl1-202;Isl1-203;Isl1-204,Isl1;Isl1;Isl1;Isl1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,14,16392,ENSMUSG00000042258,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
27173,cg13174345,-0.0000127,0.00000366,-3.474043365,0.000585681,loss,ns,-0.00000686,0.00000622,-1.102610927,0.271051416,neg,ns,0.001800957,0.001822551,0.988151847,0.323848918,pos,ns,0.489657549,-0.0000245,0.0000627,-0.390937672,0.696111845,neg,ns,0.923293954,Gm826,Gm826_Intergenic_downstream,2,160172602,160172651,160172650,160172651,50,+,AATATGCCCCCTGGCAGTGTTCCATAAAACTAATGATGTGGGGGAATACG,Distal Intergenic,2,160311393,160313616,2224,2,Gm826-202,140965,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,3,329554,ENSMUSG00000074623,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26722,cg20505337,-0.00000371,0.00000308,-1.203112107,0.229850957,loss,ns,0.00000578,0.00000524,1.102599281,0.271056468,pos,ns,0.002370864,0.00153482,1.544718289,0.123434617,pos,ns,0.908563025,-0.0000455,0.0000528,-0.862554104,0.38904945,neg,ns,0.917527328,Huwe1,Huwe1_Exon,X,151903836,151903885,151903884,151903885,50,-,ATGGCCAACACAGTCAATGCTGCTCTGAAGCCTTTGGAAACACTTTCCCG,"Exon (Huwe1-201/Huwe1, exon 49 of 83)",20,151803327,151935417,132091,1,Huwe1-201,100509,Huwe1-201;Huwe1-202;Huwe1-219;Huwe1-208;Huwe1-215,Huwe1;Huwe1;Huwe1;Huwe1;Huwe1,0;0;0;-4960;-4960,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,22,28,59026,ENSMUSG00000025261,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21220,cg08383062,-0.0000243,0.0000104,-2.345559721,0.019628628,loss,ns,0.0000194,0.0000176,1.102514961,0.271093046,pos,ns,-0.001180368,0.00516279,-0.228629832,0.819307382,neg,ns,0.086553132,-0.000224195,0.000177548,-1.262727316,0.207636196,neg,ns,0.626650868,Ppfia2,Ppfia2_Exon,10,106828940,106828989,106828940,106828941,50,+,CGTTACCTCAGTGCTCAGAGAGAATCTACCTCCATACATGACATGAATGA,"Exon (Ppfia2-201/Ppfia2, exon 9 of 32)",10,106470339,106932492,462154,1,Ppfia2-201,358601,Ppfia2-201;Ppfia2-203,Ppfia2;Ppfia2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,9,327814,ENSMUSG00000053825,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10286,cg24643874,0.0000051,0.00000387,1.315648926,0.189264062,gain,ns,0.00000725,0.00000658,1.102330885,0.271172908,pos,ns,0.003331664,0.001927941,1.728094892,0.084967027,pos,ns,1.070749576,-0.000111724,0.0000663,-1.68508685,0.09297816,neg,ns,0.91937704,Arhgap5,Arhgap5_Exon,12,52516551,52516600,52516599,52516600,50,-,CAGACTTTCTTGCCTCATCGGAGTACGAATTTGCAACCATATATAAAACG,"Exon (Arhgap5-204/Arhgap5, exon 2 of 7)",12,52503972,52545639,41668,1,Arhgap5-203,12579,Arhgap5-203;Arhgap5-204;Arhgap5-202;Arhgap5-201,Arhgap5;Arhgap5;Arhgap5;Arhgap5,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,11855,ENSMUSG00000035133,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21723,cg02294284,0.0000157,0.00000838,1.875663458,0.061641185,gain,ns,-0.0000157,0.0000142,-1.102279677,0.271195128,neg,ns,-0.008448864,0.004170439,-2.025893103,0.043631963,neg,ns,1.360195251,0.000380181,0.000143421,2.650805617,0.008442405,pos,ns,0.108589612,Slitrk1,Slitrk1_fiveUTR,14,108913248,108913297,108913248,108913249,50,+,CGTCTCCAGCAACAGAATCCAAAGCAGCATTTTTAAAGCGAGCAATTCAT,Promoter (<=1kb),14,108908800,108914158,5359,2,Slitrk1-201,861,Slitrk1-201,Slitrk1,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,7,17,76965,ENSMUSG00000075478,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
20288,cg08355659,0.0000256,0.0000121,2.117035313,0.035053101,gain,ns,0.0000226,0.0000205,1.102179712,0.271238508,pos,ns,0.013656533,0.006010388,2.272155108,0.023761864,pos,ns,1.624119498,-0.000344049,0.000206697,-1.664512564,0.097020412,neg,ns,0.31768445,Hoxc5,Hoxc5_Intron,15,102986851,102986900,102986899,102986900,50,-,AACCCTAAAGATTGTTCCACTTGAGAAGGCAGCGGATAGGTACATTTCCG,"Intron (Hoxc5-202/Hoxc5, intron 1 of 1)",15,102967443,103015676,48234,1,Hoxc5-202,19408,Hoxc5-202;Hoxc8-201;Hoxc8-202;Hoxc9-201,Hoxc5;Hoxc8;Hoxc8;Hoxc9,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,46,134,15424,ENSMUSG00000022485,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
391,cg17894861,-0.0000149,0.00000535,-2.790628474,0.005586625,loss,ns,-0.00001,0.00000909,-1.101879789,0.271368689,neg,ns,-0.002999337,0.002662493,-1.126514573,0.260819052,neg,ns,0.583660687,-0.0000995,0.0000916,-1.086382563,0.278153792,neg,ns,0.858577229,Klhl29,Klhl29_Intron,12,5353508,5353557,5353508,5353509,50,+,CGAGGAAGATTTTCAAGTGGGAGAAAAACAACCTTCCCAAACTGGCATAA,"Intron (Klhl29-201/Klhl29, intron 1 of 13)",12,5077472,5375682,298211,2,Klhl29-201,22125,Klhl29-201,Klhl29,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,23,208439,ENSMUSG00000020627,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26263,cg14781469,-0.00000466,0.00000143,-3.254224008,0.001262631,loss,ns,0.00000268,0.00000243,1.101837208,0.271387175,pos,ns,0.001686178,0.000712235,2.367445232,0.018525156,pos,ns,1.732238131,-0.0000486,0.0000245,-1.985777914,0.047938629,neg,ns,0.054351822,Bhlhe41,Bhlhe41_fiveUTR,6,145865491,145865540,145865539,145865540,50,-,CGCTGGTAGTTTGCTCTCACTCCAGGCAGTGTTTGGCCACAGGGCACGCG,Promoter (<=1kb),6,145858243,145865558,7316,2,Bhlhe41-201,18,Bhlhe41-201;Bhlhe41-202;Bhlhe41-203,Bhlhe41;Bhlhe41;Bhlhe41,0;0;-139,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,5,79362,ENSMUSG00000030256,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
25142,cg12312279,0.0000683,0.0000176,3.87904488,0.000128094,gain,ns,-0.0000329,0.0000299,-1.101754745,0.271422977,neg,ns,0.027610228,0.008758667,3.152332402,0.001778142,pos,ns,2.750033586,-0.001348677,0.00030121,-4.477531779,0.0000106,neg,ns,0.484127772,Ahdc1,Ahdc1_Exon,4,133063699,133063748,133063747,133063748,50,+,GCAGGTGCCCAGTGGCCCAGGCTTTGGGGAGGCAGGTGCTGAGTGGGCCG,"Exon (Ahdc1-203/Ahdc1, exon 6 of 7)",4,133011506,133077863,66358,1,Ahdc1-203,52193,Ahdc1-210;Ahdc1-203;Ahdc1-204;Ahdc1-205;Ahdc1-211;Ahdc1-209;Ahdc1-206;Ahdc1-201;Ahdc1-202;Ahdc1-208,Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1,0;0;0;0;0;0;0;0;0;-2501,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,49,230793,ENSMUSG00000037692,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
17620,cg08481187,-0.00000333,0.0000015,-2.219019305,0.027209218,loss,ns,0.00000281,0.00000255,1.101747172,0.271426265,pos,ns,0.000360306,0.000746336,0.482766176,0.629602505,pos,ns,0.200933553,0.0000294,0.0000257,1.145643049,0.252826504,pos,ns,0.962596018,Rpgrip1l,Rpgrip1l_Exon,8,91280961,91281010,91281009,91281010,50,-,TTAGGAATTAAGTAAACATATGCTGGTCTGCTGCTGTTGAAACCAAGGCG,"Exon (Rpgrip1l-208/Rpgrip1l, exon 1 of 1)",8,91217030,91313262,96233,2,Rpgrip1l-201,32252,Rpgrip1l-201;Rpgrip1l-204;Rpgrip1l-203;Rpgrip1l-208,Rpgrip1l;Rpgrip1l;Rpgrip1l;Rpgrip1l,0;0;-4199;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,4,244585,ENSMUSG00000033282,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2886,cg22503890,0.0000484,0.0000147,3.298045972,0.001086841,gain,ns,-0.0000274,0.0000249,-1.101657247,0.271465311,neg,ns,-0.031269632,0.007299276,-4.283935924,0.0000245,neg,ns,4.610341324,0.001089319,0.000251022,4.339543141,0.0000193,pos,ns,0.777436927,Ehbp1,Ehbp1_Intron,11,22007705,22007754,22007753,22007754,50,-,CTCACACTGGGCGCCATATGCTTCACAATAACTTTAAAAGTAGTGAATCG,"Intron (Ehbp1-201/Ehbp1, intron 22 of 23)",11,22005828,22285838,280011,2,Ehbp1-201,278084,Ehbp1-201;Ehbp1-202;Ehbp1-207;Otx1-202,Ehbp1;Ehbp1;Ehbp1;Otx1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,34,45,216565,ENSMUSG00000042302,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
23843,cg18093372,-0.00000452,0.0000116,-0.388509842,0.697905457,loss,ns,0.0000218,0.0000197,1.101548806,0.271512401,pos,ns,-0.000508945,0.005785552,-0.087968237,0.92995872,neg,ns,0.031536329,0.0000799,0.000198965,0.401491716,0.688334764,pos,ns,0.122854415,En1,En1_Promoter,1,120600217,120600266,120600217,120600218,50,-,CGCTCACTTTGATTAAGCGTCTTGCCAGCGCGATGTGACAGAGCTTTTGA,Promoter (2-3kb),1,120602418,120607992,5575,1,En1-201,-2201,En1-201,En1,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,23,36,13798,ENSMUSG00000058665,conserved gene and region,1,120600143,120600235,93,*,93,12,0.602150538,1.425287356,0.129032258,7.57E-11,CpGisland,TRUE,U13,Hc-P
16198,cg00427623,0.0000266,0.00000404,6.578984415,2.02E-10,gain,yes,-0.00000756,0.00000687,-1.101543938,0.271514515,neg,ns,-0.000493666,0.002011435,-0.245429768,0.806286081,neg,ns,0.093510837,0.0000533,0.0000692,0.76989294,0.441949669,pos,ns,0.107779203,Cyp26b1,Cyp26b1_Intron,6,84585771,84585820,84585819,84585820,50,-,TTCTTTTCTTTCAACACAAAAGTTGGGTTGTGAATTTTCCGAGGTCGCCG,"Intron (Cyp26b1-205/Cyp26b1, intron 1 of 5)",6,84571414,84587680,16267,2,Cyp26b1-205,1860,Cyp26b1-205;Cyp26b1-204;Cyp26b1-201;Cyp26b1-202;Cyp26b1-203,Cyp26b1;Cyp26b1;Cyp26b1;Cyp26b1;Cyp26b1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,9,232174,ENSMUSG00000063415,conserved gene and region,6,84585539,84585962,424,*,424,40,0.608490566,1.020150376,0.094339623,1.31E-29,CpGisland,TRUE,U3,Pr-B
1442,cg25592264,0.000202669,0.0000146,13.89513899,1.86E-34,gain,yes,-0.0000273,0.0000248,-1.101347246,0.271599944,neg,ns,-0.00397749,0.00725941,-0.547908085,0.584149312,neg,ns,0.23347613,0.000521806,0.000249651,2.090145412,0.037419251,pos,ns,0.16216463,Mycn,Mycn_Exon,12,12940328,12940377,12940376,12940377,50,+,GTCAAACTCGAGGTCTGGGTTCTTGCAGATCATGCCCGGCATGGTGGACG,"Exon (Mycn-201/Mycn, exon 2 of 3)",12,12936093,12941914,5822,2,Mycn-201,1537,Mycn-201;Mycn-202;Mycn-203,Mycn;Mycn;Mycn,0;0;1448,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,3,18109,ENSMUSG00000037169,mapped to different genes,12,12939675,12940473,799,*,799,69,0.659574468,0.797543616,0.086357947,7.49E-48,CpGisland,TRUE,U3,Pr-B
20095,cg26138622,0.00000331,0.00000317,1.046801438,0.296006663,gain,ns,0.00000592,0.00000538,1.101338163,0.27160389,pos,ns,-0.000641665,0.001575669,-0.407233394,0.68411763,neg,ns,0.164869218,0.0000607,0.0000542,1.120461492,0.263384433,pos,ns,0.928714416,Ky,Ky_Intron,9,102528178,102528227,102528226,102528227,50,-,CAATTTCTCCCTTTTTAACACCAGCATAATTGACTTTGTACCATCTGCCG,"Intron (Ky-201/Ky, intron 8 of 10)",9,102505750,102546239,40490,1,Ky-201,22428,Ky-201;Ky-202,Ky;Ky,0;6842,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,Intron,1,1,16716,ENSMUSG00000035606,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11417,cg12201500,-0.0000506,0.00000796,-6.35609994,7.39E-10,loss,yes,-0.0000149,0.0000135,-1.101323668,0.271610186,neg,ns,0.008967655,0.003963018,2.26283503,0.024337478,pos,ns,1.613724431,-0.000529104,0.000136288,-3.882256025,0.000126492,neg,ns,0.703635261,Larp1,Larp1_Exon,11,58057317,58057366,58057365,58057366,50,+,AATTTGGACATTGACCCCAAACTGCAAGAATACCTCGGCAAATTCCGACG,"Exon (Larp1-201/Larp1, exon 18 of 19)",11,58009064,58062031,52968,1,Larp1-201,48253,Larp1-201;Larp1-203,Larp1;Larp1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,6,73158,ENSMUSG00000037331,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26473,cg27551142,-0.0000131,0.00000465,-2.81011517,0.005267292,loss,ns,0.00000871,0.00000791,1.101153213,0.271684236,pos,ns,-0.001154177,0.002316786,-0.498180313,0.618710201,neg,ns,0.208512724,0.0000633,0.0000797,0.794217515,0.427676372,pos,ns,0.913947337,Gm572,Gm572_Intergenic_downstream,4,148708823,148708872,148708871,148708872,50,-,AAACTTCTCAATTATCCATATACCATAATTTTATGTGAAAGTTTGTTTCG,Distal Intergenic,4,148643317,148671572,28256,1,Gm572-201,65555,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,11,230909,ENSMUSG00000070577,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9083,cg17843786,0.00000928,0.00000273,3.393029779,0.000780995,gain,ns,0.00000511,0.00000464,1.101045876,0.271730873,pos,ns,0.003411383,0.001360628,2.507213132,0.012679982,pos,ns,1.896881378,-0.0000467,0.0000468,-0.998493812,0.31881871,neg,ns,0.046886041,Nova1,Nova1_Exon,12,46818617,46818666,46818665,46818666,50,-,GCCCGTATTGGTCCTCTTGGTGCTGCCGGCTTCAGGGGGGGCTTCCAGCG,Promoter (<=1kb),12,46694517,46818929,124413,2,Nova1-201,263,Nova1-201;Nova1-203;Nova1-202;Nova1-205,Nova1;Nova1;Nova1;Nova1,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,24,664883,ENSMUSG00000021047,conserved gene and region,12,46818385,46818823,439,*,439,48,0.69476082,0.92114006,0.109339408,9.96E-39,CpGisland,TRUE,U3,Pr-B
6424,cg18224177,-0.00000161,0.0000045,-0.358488886,0.720221489,loss,ns,0.00000842,0.00000764,1.101029801,0.271737858,pos,ns,0.001238165,0.00223913,0.552966948,0.580684571,pos,ns,0.236059713,-0.0000876,0.000077,-1.137862128,0.256056712,neg,ns,0.922446641,Stxbp5l,Stxbp5l_Exon,16,37186676,37186725,37186676,37186677,50,-,CGTTAAATCAGGATAAAAGTTAGACAGGCCACGCATGCAAAAGTTGTCTT,"Exon (Stxbp5l-206/Stxbp5l, exon 20 of 28)",16,37114942,37384923,269982,2,Stxbp5l-206,198198,Stxbp5l-206;Stxbp5l-205;Stxbp5l-204;Stxbp5l-203;Stxbp5l-201;Stxbp5l-209,Stxbp5l;Stxbp5l;Stxbp5l;Stxbp5l;Stxbp5l;Stxbp5l,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,207227,ENSMUSG00000022829,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17137,cg26423376,-0.00000142,0.00000172,-0.824899035,0.4100632,loss,ns,0.00000323,0.00000293,1.101000736,0.271750488,pos,ns,0.00058426,0.000858292,0.680724763,0.496553783,pos,ns,0.304033705,-0.0000249,0.0000295,-0.84441117,0.399090856,neg,ns,0.947089951,Brd1,Brd1_Exon,15,88701085,88701134,88701085,88701086,50,+,CGCTTACCAGTGCGCTCTGAGTGCAAGCGCTATGTGATTCATTATCAAAT,"Exon (Brd1-203/Brd1, exon 8 of 13)",15,88687034,88734233,47200,2,Brd1-203,33099,Brd1-203;Brd1-202;Brd1-205;Brd1-201,Brd1;Brd1;Brd1;Brd1,0;0;-221;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,223770,ENSMUSG00000022387,conserved gene and region,15,88700966,88701098,133,*,133,13,0.631578947,0.985185185,0.097744361,4.22E-10,CpGisland,TRUE,U10,Tr-S
24269,cg20023049,-0.0000137,0.00000843,-1.626518532,0.104855429,loss,ns,-0.0000158,0.0000143,-1.100929204,0.271781573,neg,ns,-0.01388499,0.004196312,-3.308855769,0.001047123,neg,ns,2.980002394,0.000288704,0.000144311,2.000573337,0.046310184,pos,ns,0.827904539,Clstn3,Clstn3_Exon,6,124449853,124449902,124449853,124449854,50,+,CGGCTCTCCAGGCGACCTGAGCGCACGCTGAAACCAGCCAGGTAGCCATG,"Exon (Clstn3-202/Clstn3, exon 11 of 18)",6,124430759,124462744,31986,2,Clstn3-202,12842,Clstn3-202;Clstn3-201;Clstn3-205,Clstn3;Clstn3;Clstn3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,6,232370,ENSMUSG00000008153,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16119,cg27398268,-0.0000173,0.0000103,-1.674884256,0.094965367,loss,ns,0.0000193,0.0000175,1.100916346,0.27178716,pos,ns,0.005578114,0.005127909,1.087795205,0.277530535,pos,ns,0.556689227,-0.000379902,0.000176348,-2.154272176,0.031989148,neg,ns,0.613834587,Bnc2,Bnc2_Intron,4,84449478,84449527,84449526,84449527,50,+,CAGCATTAATGTACTTAACAAGACAGAGCTAAATTCAATGAAGCTTGACG,"Intron (Bnc2-201/Bnc2, intron 4 of 7)",4,84275095,84675034,399940,2,Bnc2-201,225507,Bnc2-201;Bnc2-202;Bnc2-214;Bnc2-215;Bnc2-206;Bnc2-211;Bnc2-205;Bnc2-217;Bnc2-207;Bnc2-212;Bnc2-203;Bnc2-209;Bnc2-221;Bnc2-204;Bnc2-220;Bnc2-208,Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,91,242509,ENSMUSG00000028487,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15768,cg05709691,-0.0000282,0.00000857,-3.286422355,0.001131108,loss,ns,-0.000016,0.0000146,-1.100683137,0.271888521,neg,ns,-0.005916671,0.004263768,-1.387662685,0.166236416,neg,ns,0.779273833,-0.000106135,0.000146631,-0.723828699,0.469716762,neg,ns,0.864482705,Dpf3,Dpf3_Exon,12,83269508,83269557,83269556,83269557,50,-,CCTCATCAAAGCCGTGGAAAGTTGACGTGTCACTTTCTGACGTGGAACCG,"Exon (Dpf3-203/Dpf3, exon 7 of 7)",12,83213745,83350895,137151,2,Dpf3-204,81338,Dpf3-204;Dpf3-207;Dpf3-202;Dpf3-203;Dpf3-201;Dpf3-206;Dpf3-205,Dpf3;Dpf3;Dpf3;Dpf3;Dpf3;Dpf3;Dpf3,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,16,70127,ENSMUSG00000021221,conserved gene and region,12,83269462,83269588,127,*,127,13,0.582677165,1.205989774,0.102362205,2.30E-10,CpGisland,TRUE,U11,Tr-P
18409,cg27511002,-0.00000449,0.00000209,-2.148443151,0.032452987,loss,ns,0.00000391,0.00000355,1.100434283,0.271996711,pos,ns,0.000939839,0.001040082,0.903619454,0.366898861,pos,ns,0.435453636,0.0000204,0.0000358,0.570582732,0.568695869,pos,ns,0.956621633,Mllt11,Mllt11_Exon,3,95220383,95220432,95220383,95220384,50,-,CGACAGATCCAGTTCTGGGATGGGCATCCTCCAGAAAAGAAAGGAACTGT,"Exon (Mllt11-201/Mllt11, exon 2 of 2)",3,95219135,95228677,9543,2,Mllt11-201,8245,Gabpb2-204;Gabpb2-205;Gabpb2-201;Gabpb2-209;Gabpb2-206;Gabpb2-203;Gabpb2-208;Mllt11-201;Mllt11-202;Mllt11-204,Gabpb2;Gabpb2;Gabpb2;Gabpb2;Gabpb2;Gabpb2;Gabpb2;Mllt11;Mllt11;Mllt11,-2674;-2467;-2674;-2467;-2467;-2629;-2689;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,56772,ENSMUSG00000053192,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3917,cg06097717,0.00000764,0.00000942,0.811176401,0.417886729,gain,ns,0.0000176,0.000016,1.100223678,0.272088295,pos,ns,0.005468694,0.004689032,1.166273568,0.24440031,pos,ns,0.611898248,-0.000349818,0.000161255,-2.169343835,0.030816221,neg,ns,0.880963135,5730522E02Rik,5730522E02Rik_Intron,11,25753499,25753548,25753547,25753548,50,+,AAGCTCTGTCCCATTTGGCTAATTCAGAAGTTAATGGAAGGTCTCTTTCG,"Intron (5730522E02Rik-202/5730522E02Rik, intron 2 of 5)",11,25617668,26210569,592902,2,5730522E02Rik-202,457021,5730522E02Rik-202;5730522E02Rik-201;5730522E02Rik-208,5730522E02Rik;5730522E02Rik;5730522E02Rik,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,90,70626,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6397,cg25495150,0.00000682,0.00000176,3.876142279,0.000129559,gain,ns,-0.00000329,0.00000299,-1.100179829,0.272107365,neg,ns,-0.0000767,0.00087586,-0.087616346,0.930238179,neg,ns,0.03140584,0.00000831,0.0000301,0.276026022,0.782711999,pos,ns,0.05115925,Marcks,Marcks_fiveUTR,10,37138506,37138555,37138506,37138507,50,+,CGCTGCGGTCTTGGAGAACTGGGCACCCATGCTGGCTTCTTCAACAAAGA,Promoter (<=1kb),10,37133375,37138920,5546,2,Marcks-201,365,Marcks-201,Marcks,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,8,17118,ENSMUSG00000069662,conserved gene but different region,10,37138455,37138512,58,*,58,8,0.75862069,0.991452992,0.137931035,0.000000166,CpGisland,TRUE,U1,Pr-A
1324,cg03371896,0.0000357,0.00000627,5.692004463,2.91E-08,gain,yes,-0.0000117,0.0000107,-1.100124695,0.272131345,neg,ns,0.005928485,0.003120974,1.899562452,0.058418534,pos,ns,1.233449342,-0.000203188,0.00010733,-1.893116317,0.059273596,neg,ns,0.014892317,Fezf2,Fezf2_Intron,14,12346163,12346212,12346163,12346164,50,-,CGAACACGCGCAAATGATAATTACCTCATTAGGATGTGGCGCATGGACGC,"Intron (Fezf2-202/Fezf2, intron 2 of 5)",14,12343388,12348189,4802,2,Fezf2-202,1977,Fezf2-203;Fezf2-201;Fezf2-202,Fezf2;Fezf2;Fezf2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,45,54713,ENSMUSG00000021743,conserved gene but different region,14,12346017,12346222,206,*,206,21,0.611650485,1.094358715,0.101941748,1.67E-16,CpGisland,TRUE,U13,Hc-P
16314,cg27506034,-0.000000328,0.00000354,-0.09264552,0.926245023,loss,ns,-0.00000662,0.00000602,-1.100073272,0.272153713,neg,ns,0.002850593,0.001763916,1.616059649,0.107098602,pos,ns,0.970216198,-0.0000763,0.0000607,-1.258467398,0.209169727,neg,ns,0.079693768,Mrm1,Mrm1_Intergenic_downstream,11,84739031,84739080,84739079,84739080,50,+,ACACAATTTCCTGCACAGCAGTGTGCTTCATAATGCTGGGAGCCAAGCCG,Distal Intergenic,11,84814743,84815390,648,2,Mrm1-203,76310,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,37,42,217038,ENSMUSG00000018405,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8977,cg05430673,-0.0000756,0.0000166,-4.54291957,0.00000796,loss,ns,0.0000311,0.0000283,1.099971957,0.272197786,pos,ns,-0.008516224,0.008277534,-1.028835844,0.304358882,neg,ns,0.51661402,-0.0000344,0.000284664,-0.120731837,0.903981654,neg,ns,0.676684421,Gm13469,Gm13469_Intergenic_upstream,2,46443704,46443753,46443752,46443753,50,+,CCACATAATTTATTTTCTTTGGTCGGGCACATTTGCCTCATGCTTGGCCG,Distal Intergenic,2,46406220,46406569,350,2,Gm13469-201,-37135,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,20,27,383690,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1368,cg23431105,0.000013,0.00000354,3.668595434,0.000286987,gain,ns,-0.00000661,0.00000601,-1.099827762,0.27226052,neg,ns,-0.001685779,0.001760817,-0.957384109,0.339119451,neg,ns,0.4696473,-0.00000612,0.0000606,-0.100993822,0.919620652,neg,ns,0.909089886,Pdzd2,Pdzd2_Exon,15,12445529,12445578,12445577,12445578,50,-,GCGGCACCTCCTTCCTTCACTTGAGTGACAACGATAGCGTGAGGTGAGCG,"Exon (Pdzd2-201/Pdzd2, exon 3 of 24)",15,12359711,12592556,232846,2,Pdzd2-201,146978,Pdzd2-201;Pdzd2-208;Pdzd2-206,Pdzd2;Pdzd2;Pdzd2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,5,68070,ENSMUSG00000022197,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
318,cg16512330,0.0000811,0.00000646,12.54854897,1.74E-29,gain,yes,-0.0000121,0.000011,-1.099798178,0.272273392,neg,ns,0.001743815,0.003216366,0.542169174,0.588091475,pos,ns,0.230555116,0.0000633,0.000110611,0.571942419,0.567775476,pos,ns,0.23058359,Cnih2,Cnih2_Exon,19,5098182,5098231,5098182,5098183,50,+,CGTGCCAGATGACAAAGAAGATGAGGGAGGCGCACAGCACCAGGGTGAGC,Promoter (<=1kb),19,5092868,5098521,5654,2,Cnih2-201,290,Cnih2-201;Cnih2-202;Rab1b-201;Rab1b-204;Rab1b-202;Rab1b-203,Cnih2;Cnih2;Rab1b;Rab1b;Rab1b;Rab1b,0;0;8841;8745;8774;8014,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,4,12794,ENSMUSG00000024873,conserved gene and region,19,5098157,5098610,454,*,454,57,0.762114537,0.867545007,0.125550661,9.76E-50,CpGisland,TRUE,NA,NRS
3164,cg24596455,0.0000185,0.00000319,5.786220915,1.76E-08,gain,yes,-0.00000596,0.00000542,-1.099573707,0.272371075,neg,ns,0.002035146,0.001587174,1.282244811,0.200714816,pos,ns,0.697420568,-0.0000576,0.0000546,-1.056110894,0.291739896,neg,ns,0.028285734,Nol4,Nol4_Promoter,18,23041770,23041819,23041818,23041819,50,-,ACGGCTGGGCGCTGACGTCACGGGCAGAATTGTCCCATTTAGGGATCCCG,Promoter (<=1kb),18,22693634,23041653,348020,2,Nol4-204,-166,Nol4-202;Nol4-204;Nol4-208;Nol4-206;Nol4-209,Nol4;Nol4;Nol4;Nol4;Nol4,0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,5,21,319211,ENSMUSG00000041923,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
11771,cg01392943,0.0000261,0.0000199,1.310631351,0.190952488,gain,ns,-0.0000371,0.0000338,-1.099480394,0.272411689,neg,ns,0.02033078,0.009893672,2.05492759,0.040723738,pos,ns,1.390152362,-0.000507022,0.000340243,-1.490179012,0.137193907,neg,ns,0.417185391,Mbnl1,Mbnl1_Exon,3,60529715,60529764,60529715,60529716,50,-,CGGCCAGACACGGAATGTAAATTTGCACATCCTTCGAAAAGCTGCCAAGT,"Exon (Mbnl1-221/Mbnl1, exon 2 of 4)",3,60472830,60595764,122935,1,Mbnl1-222,56885,Mbnl1-222;Mbnl1-221;Mbnl1-216;Mbnl1-220;Mbnl1-211;Mbnl1-204;Mbnl1-201;Mbnl1-209;Mbnl1-202;Mbnl1-225;Mbnl1-217;Mbnl1-203;Mbnl1-218;Mbnl1-208;Mbnl1-219;Mbnl1-214;Mbnl1-207;Mbnl1-205;Mbnl1-212,Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,19,36,56758,ENSMUSG00000027763,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5602,cg20916188,-0.0000646,0.0000119,-5.454726112,0.0000001,loss,yes,-0.0000221,0.0000201,-1.099447265,0.272426109,neg,ns,-0.021947539,0.005898296,-3.720996787,0.000235561,neg,ns,3.62789745,0.000602512,0.000202842,2.970355099,0.003206993,pos,ns,0.749780888,Pbx3,Pbx3_Exon,2,34302920,34302969,34302920,34302921,50,+,CGTATAGAAAGCAGTTTTGACAGTGATGTATTGCAACTGGTTCCAGATGT,"Exon (C79798-201/C79798-201, exon 2 of 2)",2,34171457,34372038,200582,2,Pbx3-202,69069,Pbx3-202;Pbx3-201;Pbx3-206;Pbx3-207;Pbx3-209;Pbx3-204;Pbx3-205;Pbx3-203,Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,82,18516,ENSMUSG00000038718,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5092,cg19458995,0.00000325,0.00000231,1.406740725,0.160505989,gain,ns,-0.00000432,0.00000393,-1.099438284,0.272430018,neg,ns,-0.000326213,0.001150205,-0.283612612,0.776896588,neg,ns,0.109636786,-0.0000134,0.0000396,-0.339909538,0.734154842,neg,ns,0.944973652,Nprl3,Nprl3_Exon,11,32259236,32259285,32259236,32259237,50,+,CGGTTGGAGGACATGGCTCGCTGAAATGGGAACAGGACCATCAAGACCAA,"Exon (Nprl3-208/Nprl3, exon 3 of 6)",11,32225628,32267689,42062,2,Nprl3-205,8404,Nprl3-205;Nprl3-203;Nprl3-213;Nprl3-201;Nprl3-211;Nprl3-212;Nprl3-202;Nprl3-216;Nprl3-208;Nprl3-210,Nprl3;Nprl3;Nprl3;Nprl3;Nprl3;Nprl3;Nprl3;Nprl3;Nprl3;Nprl3,0;0;0;0;0;0;0;0;0;8266,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,2,17168,ENSMUSG00000020289,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18784,cg15869315,-0.000000998,0.00000479,-0.208151977,0.835246992,loss,ns,-0.00000895,0.00000814,-1.099250173,0.272511909,neg,ns,-0.006409556,0.002385673,-2.686686286,0.007605671,neg,ns,2.11886244,0.000325794,0.000082,3.971014792,0.000089,pos,ns,0.888651627,Naa11,Naa11_Intergenic_downstream,5,97349036,97349085,97349084,97349085,50,-,CTCCTATCCTCACTGCTCCCAAGTGCCAATTGGAAATAACTACATCATCG,Distal Intergenic,5,97382198,97392379,10182,2,Naa11-201,43343,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,4,97243,ENSMUSG00000046000,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25937,cg26408533,-0.0000289,0.00000742,-3.89717134,0.000119294,loss,ns,0.0000139,0.0000126,1.099225122,0.272522816,pos,ns,-0.000600489,0.003695295,-0.162500857,0.871017326,neg,ns,0.059973206,-0.0000815,0.000127081,-0.641108423,0.521925918,neg,ns,0.869690435,Macrod2,Macrod2_Intron,2,141490631,141490680,141490679,141490680,50,-,AATTTTCCACACGCTAATTAAAATTCCATTTCTCATGAATTCTTTAATCG,"Intron (Macrod2-207/Macrod2, intron 5 of 16)",2,140395309,142392966,1997658,1,Macrod2-207,1095322,Macrod2-207;Macrod2-206;Macrod2-202,Macrod2;Macrod2;Macrod2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,5,72899,ENSMUSG00000068205,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15592,cg15512297,0.000167803,0.000014,11.98508755,1.88E-27,gain,yes,-0.0000261,0.0000238,-1.099096696,0.272578735,neg,ns,0.023274956,0.006968418,3.34006319,0.000939902,pos,ns,3.026917537,-0.000703959,0.000239643,-2.937527935,0.003556406,neg,ns,0.114382907,Zfp804a,Zfp804a_fiveUTR,2,82053778,82053827,82053778,82053779,50,-,CGGCGGCTGCCCCATGGAGTGTTACTACATTGTCATCAGCTCCACGCATC,Promoter (<=1kb),2,82053222,82259879,206658,1,Zfp804a-201,556,Zfp804a-201,Zfp804a,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,9,241514,ENSMUSG00000070866,conserved gene and region,2,82053332,82053782,451,*,451,65,0.771618625,0.972143923,0.144124169,3.16E-61,CpGisland,TRUE,U3,Pr-B
13688,cg08757011,-0.0000204,0.00000613,-3.328100281,0.000979735,loss,ns,-0.0000114,0.0000104,-1.099045371,0.272601085,neg,ns,-0.008527166,0.003050003,-2.795789702,0.005500381,neg,ns,2.25960723,-0.0000369,0.000104889,-0.352160754,0.724956989,neg,ns,0.824459562,Irx1,Irx1_Intergenic_upstream,13,72097799,72097848,72097799,72097800,50,+,CGAGGAAATCATGTTGGTCTGATTGCAATTTTGTTTTCCAATTGAAAGTA,Distal Intergenic,13,71957921,71963723,5803,2,Irx1-201,-134076,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,8,16371,ENSMUSG00000060969,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17138,cg07490726,-0.00000472,0.0000018,-2.621579045,0.009184128,loss,ns,-0.00000336,0.00000306,-1.098952698,0.272641444,neg,ns,-0.000896086,0.000896364,-0.999689695,0.318240379,neg,ns,0.497244716,-0.00000135,0.0000308,-0.043672981,0.965193193,neg,ns,0.945990282,Brd1,Brd1_Exon,15,88701097,88701146,88701097,88701098,50,+,CGCTCTGAGTGCAAGCGCTATGTGATTCATTATCAAATGTGACTCTTTTG,"Exon (Brd1-203/Brd1, exon 8 of 13)",15,88687034,88734233,47200,2,Brd1-203,33087,Brd1-203;Brd1-202;Brd1-205;Brd1-201,Brd1;Brd1;Brd1;Brd1,0;0;-233;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,223770,ENSMUSG00000022387,conserved gene and region,15,88700966,88701098,133,*,133,13,0.631578947,0.985185185,0.097744361,4.22E-10,CpGisland,TRUE,U10,Tr-S
14571,cg23810523,0.0000713,0.0000143,4.974350746,0.00000109,gain,yes,0.0000268,0.0000244,1.098948905,0.272643096,pos,ns,0.007800506,0.007135879,1.093138854,0.275181569,pos,ns,0.560380658,0.000149001,0.000245402,0.607168399,0.544183616,pos,ns,0.651366198,Scrt1,Scrt1_threeUTR,15,76516488,76516537,76516536,76516537,50,-,GAATCAGTACAAAATAGGTGCTACCTAAACGTTCCTTCTACCTGAATTCG,3' UTR,15,76516203,76522499,6297,2,Scrt1-201,5962,Dgat1-201;Dgat1-210;Dgat1-212;Dgat1-211;Dgat1-209;Scrt1-201;Scrt1-202,Dgat1;Dgat1;Dgat1;Dgat1;Dgat1;Scrt1;Scrt1,-4537;-4808;-4814;-4535;-4662;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,6,170729,ENSMUSG00000048385,conserved gene and region,15,76516517,76516632,116,*,116,9,0.612068966,0.892307692,0.077586207,0.00000318,CpGisland,TRUE,U13,Hc-P
1296,cg06502061,0.0000168,0.0000127,1.320475944,0.187650219,gain,ns,0.0000238,0.0000217,1.098911703,0.272659298,pos,ns,0.009738498,0.006344094,1.535049608,0.125791594,pos,ns,0.90034838,-0.0000477,0.000218173,-0.218748167,0.826990169,neg,ns,0.26666248,Fezf2,Fezf2_Intergenic_downstream,14,12337763,12337812,12337763,12337764,50,+,CGCTGTTCTCTAGGCCTGAATCCAAGCAGTTTGTCAGATGCTCATTAACT,Distal Intergenic,14,12342094,12345844,3751,2,Fezf2-203,8032,Fezf2-203;Fezf2-201,Fezf2;Fezf2,0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,21,45,54713,ENSMUSG00000021743,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
21408,cg09883885,-0.00000549,0.0000035,-1.567005421,0.118133594,loss,ns,-0.00000654,0.00000595,-1.098851031,0.272685725,neg,ns,-0.003799209,0.001744457,-2.17787488,0.030168896,neg,ns,1.520440588,-0.000044,0.00006,-0.733757018,0.463651405,neg,ns,0.930380447,Ppfibp2,Ppfibp2_Exon,7,107705314,107705363,107705362,107705363,50,-,GAGCAGATGTGTAGGCTGCAGCTGGACATCCACAGGCAGATTCAAGAGCG,"Exon (Ppfibp2-207/Ppfibp2, exon 5 of 7)",7,107595266,107744885,149620,1,Ppfibp2-201,110048,Ppfibp2-201;Ppfibp2-202;Ppfibp2-207,Ppfibp2;Ppfibp2;Ppfibp2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,19024,ENSMUSG00000036528,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14954,cg16995983,0.0000262,0.00000459,5.69591556,2.85E-08,gain,yes,-0.00000857,0.0000078,-1.098764476,0.272723427,neg,ns,-0.001226634,0.002285588,-0.536682243,0.591872062,neg,ns,0.227772159,0.00000256,0.0000786,0.032509994,0.974086267,pos,ns,0.223404311,Nr2f1,Nr2f1_fiveUTR,13,78198806,78198855,78198806,78198807,50,-,CGCCCGCCCGCCCTGCTGGCGTTTTGTTGTGGTTCCTGCTGTTTTCTTTC,Promoter (<=1kb),13,78188973,78199757,10785,2,Nr2f1-201,902,Nr2f1-201;Nr2f1-205;Nr2f1-203;Nr2f1-202;Nr2f1-206,Nr2f1;Nr2f1;Nr2f1;Nr2f1;Nr2f1,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,8,55,13865,ENSMUSG00000069171,mapped to different genes,13,78198685,78198826,142,*,142,25,0.85915493,0.975274725,0.176056338,2.14E-26,CpGisland,TRUE,NA,NRS
6804,cg25999088,-0.00000818,0.00000289,-2.832453569,0.004921672,loss,ns,-0.00000539,0.00000491,-1.098721124,0.272742311,neg,ns,-0.000885293,0.001437007,-0.616067611,0.538301984,neg,ns,0.26897402,-0.00000309,0.0000494,-0.062539767,0.950173298,neg,ns,0.944500394,Luc7l2,Luc7l2_fiveUTR,6,38570527,38570576,38570527,38570528,50,+,CGAATCAAATTCAGTGATGACAGAGTATGCAAGAGTCACCTTCTCAACTG,5' UTR,6,38551334,38605040,53707,1,Luc7l2-213,19193,Luc7l2-213;Luc7l2-208;Luc7l2-201;Luc7l2-209;Luc7l2-207;Luc7l2-205;Luc7l2-202;Luc7l2-204;Luc7l2-210;Luc7l2-203,Luc7l2;Luc7l2;Luc7l2;Luc7l2;Luc7l2;Luc7l2;Luc7l2;Luc7l2;Luc7l2;Luc7l2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,10,192196,ENSMUSG00000029823,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26066,cg05506187,-0.00002,0.00000537,-3.730505172,0.000227215,loss,ns,0.00001,0.00000912,1.098685029,0.272758036,pos,ns,-0.005040845,0.002672848,-1.885945437,0.06023703,neg,ns,1.22013645,0.0000537,0.0000919,0.584523649,0.559293205,pos,ns,0.868656121,Sox5,Sox5_Intron,6,143594972,143595021,143595020,143595021,50,-,CCAAACAGACATGATTATATATGAGACAGAAAGGCACTTACATCACTGCG,"Intron (1700060C16Rik-201/1700060C16Rik-201, intron 4 of 4)",6,143861441,143947088,85648,2,Sox5-206,352116,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,71,20678,ENSMUSG00000041540,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7084,cg12783911,-0.0000974,0.0000291,-3.349904687,0.000908268,loss,ns,0.0000543,0.0000494,1.098587558,0.272800501,pos,ns,0.003701798,0.014474564,0.255745011,0.798317348,pos,ns,0.097824433,0.0000792,0.000497779,0.159154223,0.873651007,pos,ns,0.46524258,Bsx,Bsx_Intergenic_upstream,9,40858770,40858819,40858770,40858771,50,+,CGGTTTAAGTCATGTGATTGCAAATAGTAAATTAGTTTCTCGATGTTTTC,Distal Intergenic,9,40874127,40880057,5931,1,Bsx-201,-15308,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,3,244813,ENSMUSG00000054360,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
26104,cg00788325,0.00000336,0.00000405,0.830122096,0.407108571,gain,ns,0.00000756,0.00000688,1.098359959,0.272899677,pos,ns,0.003228693,0.002016759,1.600931313,0.110410663,pos,ns,0.956988981,-0.000108207,0.0000694,-1.56016236,0.119741785,neg,ns,0.902104438,Dcx,Dcx_Exon,X,143931078,143931127,143931078,143931079,50,-,CGGTCAGAGGACACAGCGTACACAATCCCCTTGAAGTAGCGGTCCCCATT,"Exon (Dcx-201/Dcx, exon 2 of 7)",20,143855842,143933311,77470,2,Dcx-201,2184,Dcx-201;Dcx-203;Dcx-202;Dcx-204;Dcx-206;Dcx-205,Dcx;Dcx;Dcx;Dcx;Dcx;Dcx,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,8,13193,ENSMUSG00000031285,conserved gene and region,X,143930980,143931139,160,*,160,10,0.49375,1.025641026,0.0625,0.00000493,CpGisland,TRUE,NA,NRS
1896,cg09267291,-0.000000337,0.00000166,-0.203012381,0.839258538,loss,ns,0.0000031,0.00000282,1.098353581,0.272902456,pos,ns,0.001511509,0.000825905,1.830124663,0.068191386,pos,ns,1.166270483,0.00000328,0.0000284,0.115517624,0.908109643,pos,ns,0.044593424,Bicra,Bicra_fiveUTR,7,16047865,16047914,16047913,16047914,50,+,AAGAGAAATTGCTACATTGTGAGAAACTCACCCTGATGTTTGAGCAGCCG,Promoter (<=1kb),7,15970672,16047921,77250,2,Bicra-204,7,Bicra-204,Bicra,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,6,243842,ENSMUSG00000070808,conserved gene and region,7,16047913,16048113,201,*,201,34,0.835820896,0.971981226,0.169154229,4.33E-35,CpGisland,TRUE,U1,Pr-A
17605,cg19562810,0.0000958,0.00000811,11.81453359,7.63E-27,gain,yes,-0.0000151,0.0000138,-1.098336293,0.272909991,neg,ns,0.006603422,0.004037803,1.635399506,0.102980245,pos,ns,0.987246078,0.000116865,0.00013886,0.841603245,0.400658821,pos,ns,0.273731832,Olig2,Olig2_Promoter,16,91223802,91223851,91223850,91223851,50,+,TTTAAATACATATTTAACGGATGGCTGCAGAGCCAGCTGGGAAACACGCG,Promoter (1-2kb),16,91225457,91228677,3221,1,Olig2-201,-1606,Olig2-201,Olig2,-1606,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,2,50913,ENSMUSG00000039830,conserved gene and region,16,91223715,91223974,260,*,260,16,0.530769231,0.892512336,0.061538462,2.90E-09,CpGisland,TRUE,U13,Hc-P
5456,cg11815961,-0.00000515,0.00000108,-4.756509262,0.00000302,loss,ns,-0.00000202,0.00000184,-1.09825192,0.272946764,neg,ns,0.00165489,0.000539315,3.068505381,0.002341297,pos,ns,2.630543521,-0.0000371,0.0000185,-2.002498182,0.046101808,neg,ns,0.971561588,Kalrn,Kalrn_Exon,16,34009276,34009325,34009324,34009325,50,-,GCTAGTATTAGGGTCAAGATCATCACACTCTGATTCCTCGGAACTGTTCG,"Exon (Kalrn-212/Kalrn, exon 18 of 27)",16,33969073,34095987,126915,2,Kalrn-212,86662,Gm49594-201;Kalrn-212;Kalrn-201;Kalrn-220;Kalrn-209;Kalrn-211;Kalrn-217;Kalrn-210;Kalrn-221,Gm49594;Kalrn;Kalrn;Kalrn;Kalrn;Kalrn;Kalrn;Kalrn;Kalrn,-1819;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,18,22,545156,ENSMUSG00000061751,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10457,cg25211765,-0.000019,0.00000887,-2.140518082,0.033092896,loss,ns,0.0000165,0.0000151,1.098176683,0.272979557,pos,ns,0.004015286,0.004414021,0.909666329,0.363705216,pos,ns,0.43925047,-0.00037217,0.000151798,-2.451748301,0.014767852,neg,ns,0.763149923,Npas3,Npas3_Exon,12,53640468,53640517,53640468,53640469,50,-,CGAAGGAGAAGCCCCAGTGCACTAGCCATTGAAGTATTTGAAGCACATTT,"Exon (Npas3-204/Npas3, exon 3 of 11)",12,53248157,54069532,821376,1,Npas3-204,392311,Npas3-204;Npas3-201;Npas3-203,Npas3;Npas3;Npas3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,13,103,27386,ENSMUSG00000021010,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24009,cg22368918,-0.00000633,0.00000291,-2.179396528,0.030054677,loss,ns,0.00000542,0.00000494,1.098156527,0.272988343,pos,ns,0.002353615,0.001446394,1.627229678,0.104704277,pos,ns,0.980035576,-0.00000423,0.0000497,-0.084955493,0.932351613,neg,ns,0.952585669,Cux2,Cux2_Exon,5,121873713,121873762,121873761,121873762,50,-,AACTGCTTCATCTTGATGAAGGGCTCCTTGCCCTTCACCGTGAGCTTGCG,"Exon (Cux2-202/Cux2, exon 16 of 23)",5,121856366,122049851,193486,2,Cux2-202,176089,Cux2-202;Cux2-201;Cux2-210;Cux2-209,Cux2;Cux2;Cux2;Cux2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,21,13048,ENSMUSG00000042589,conserved gene and region,5,121873751,121873837,87,*,87,8,0.655172414,0.87,0.091954023,0.00000415,CpGisland,TRUE,U11,Tr-P
21003,cg10958641,0.00000607,0.00000355,1.708566116,0.088532294,gain,ns,-0.00000663,0.00000604,-1.098003405,0.273055095,neg,ns,-0.001701083,0.001768985,-0.961615035,0.336992471,neg,ns,0.472379802,0.00010359,0.0000608,1.702794387,0.089608904,pos,ns,0.920867555,Gm19566,Gm19566_Intergenic_downstream,5,105974901,105974950,105974949,105974950,50,+,CATCAAAAAGCCTTATCATACCCTGATGGTTTAAATCTTTAAACAGAGCG,Distal Intergenic,5,105980573,105981182,610,2,Gm19566-201,6232,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,8,100503127,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26472,cg05917369,0.000000434,0.00000485,0.089536269,0.92871355,gain,ns,0.00000904,0.00000824,1.097935346,0.273084767,pos,ns,0.007296621,0.002412592,3.02439096,0.00269965,pos,ns,2.568692589,-0.000198259,0.000083,-2.389557587,0.017466018,neg,ns,0.914772428,Gm572,Gm572_Intergenic_downstream,4,148708564,148708613,148708564,148708565,50,+,CGCACTTAATATTGATTTTGTTAGTGTTCAGATTCAATAATAAGGTACTG,Distal Intergenic,4,148643317,148671572,28256,1,Gm572-201,65247,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,11,230909,ENSMUSG00000070577,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26073,cg14708847,0.0000204,0.00000559,3.647090259,0.000311009,gain,ns,0.0000104,0.0000095,1.09790566,0.273097711,pos,ns,0.010792909,0.002782608,3.878702208,0.000128266,pos,ns,3.891888188,-0.000315004,0.0000957,-3.291795746,0.00111044,neg,ns,0.120266252,Pak3,Pak3_Intron,X,143664238,143664287,143664286,143664287,50,+,GCTTCCTGCCTGGAAACAAAAGATTGGTCCCCAGTAGCCCACTCAGGGCG,"Intron (Pak3-201/Pak3, intron 1 of 15)",20,143518591,143797792,279202,1,Pak3-201,145647,Pak3-201;Pak3-207;Pak3-205;Pak3-206;Pak3-209;Pak3-208;Pak3-204;Pak3-202;Pak3-203,Pak3;Pak3;Pak3;Pak3;Pak3;Pak3;Pak3;Pak3;Pak3,0;0;0;-86;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,9,18481,ENSMUSG00000031284,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24707,cg12950334,-5.87E-08,0.000000508,-0.115476574,0.908142152,loss,ns,-0.000000948,0.000000864,-1.09778486,0.273150386,neg,ns,-0.000682514,0.00025302,-2.697469985,0.007369222,neg,ns,2.132578353,0.0000165,0.0000087,1.89630513,0.058849313,pos,ns,0.989963871,Fbxl19,Fbxl19_fiveUTR,7,127748377,127748426,127748425,127748426,50,-,TCTGCCGAGACATGAAGAAGTTCGGGGGGCCCGGGCGCATGAAGCAGTCG,5' UTR,7,127744543,127749714,5172,1,Fbxl19-206,3834,Fbxl19-206;Fbxl19-203;Fbxl19-205;Fbxl19-202;Fbxl19-201;Fbxl19-204;Fbxl19-207,Fbxl19;Fbxl19;Fbxl19;Fbxl19;Fbxl19;Fbxl19;Fbxl19,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,3,233902,ENSMUSG00000030811,conserved gene and region,7,127748254,127748450,197,*,197,27,0.705583756,1.110902256,0.137055838,6.06E-25,CpGisland,TRUE,U11,Tr-P
24311,cg00957561,-0.0000771,0.0000078,-9.893016422,3.10E-20,loss,yes,0.0000145,0.0000132,1.097710049,0.273183011,pos,ns,0.017342105,0.003880585,4.468940485,0.000011,pos,ns,4.957253755,-0.000667125,0.000133453,-4.99895068,0.000000966,neg,yes,0.149196983,Pou3f1,Pou3f1_Intron,4,124595073,124595122,124595121,124595122,50,-,CGGGAGTTTGCATAACAGCTCCACCCACCCAACTGAAAGAAATGTCACCG,"Intron (Gm2164-201/Gm2164-201, intron 1 of 1)",4,124656807,124660655,3849,1,Pou3f1-201,-61734,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,43,85,18991,ENSMUSG00000090125,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
25665,cg25281241,0.00000116,0.00000193,0.603045078,0.546919628,gain,ns,-0.00000359,0.00000327,-1.097660699,0.273204533,neg,ns,0.00214785,0.000958555,2.240717769,0.025752283,pos,ns,1.589184267,-0.0000567,0.000033,-1.720076993,0.086416437,neg,ns,0.943468594,Eif4g3,Eif4g3_Exon,4,138103324,138103373,138103372,138103373,50,-,TTTACCCAAGTCAGCCGGTGTATCAGTCAGCACCTATCATAGTGCCTACG,"Exon (Eif4g3-210/Eif4g3, exon 9 of 10)",4,137993022,138105419,112398,1,Eif4g3-210,110302,Eif4g3-210;Eif4g3-201;Eif4g3-204;Eif4g3-203;Eif4g3-202;Eif4g3-205;Eif4g3-215;Eif4g3-214,Eif4g3;Eif4g3;Eif4g3;Eif4g3;Eif4g3;Eif4g3;Eif4g3;Eif4g3,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,10,230861,ENSMUSG00000028760,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14641,cg03220194,-0.00000308,0.00000158,-1.943935964,0.052807728,loss,ns,0.00000295,0.00000269,1.097642952,0.273212273,pos,ns,0.001117177,0.000788198,1.417381632,0.157375651,pos,ns,0.803062461,-0.0000335,0.0000271,-1.236123009,0.217348637,neg,ns,0.04829718,Nsrp1,Nsrp1_Exon,11,77078070,77078119,77078070,77078071,50,-,CGGGTTAGGAAGCAAGACTGAGGGGCCTCAGACCGAGCTTTTGGAAAATA,Promoter (<=1kb),11,77044292,77078435,34144,2,Nsrp1-201,316,Nsrp1-201;Nsrp1-202;Nsrp1-203,Nsrp1;Nsrp1;Nsrp1,0;-33;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,237859,ENSMUSG00000037958,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
6027,cg17552710,-0.0000278,0.00000554,-5.016294471,0.000000889,loss,yes,-0.0000103,0.00000941,-1.097583921,0.27323802,neg,ns,-0.008097416,0.002757029,-2.937008072,0.003562209,neg,ns,2.448280567,0.000111345,0.0000948,1.174352424,0.241155226,pos,ns,0.90257119,Cxxc5,Cxxc5_threeUTR,18,35861181,35861230,35861229,35861230,50,+,TCTTTCCGACCATGAAATAGTGCATAGTTTGCCTGGAGAATCCACTCACG,3' UTR,18,35829788,35861688,31901,1,Cxxc5-201,31393,Cxxc5-202;Cxxc5-201;Cxxc5-206;Cxxc5-203;Cxxc5-204;Cxxc5-205,Cxxc5;Cxxc5;Cxxc5;Cxxc5;Cxxc5;Cxxc5,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,7,49,67393,ENSMUSG00000046668,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23530,cg26409285,0.0000382,0.00000354,10.77444781,3.34E-23,gain,yes,0.0000066,0.00000602,1.097553634,0.273251231,pos,ns,0.007197202,0.001762686,4.083088267,0.0000566,pos,ns,4.247083847,-0.0000973,0.0000606,-1.605571831,0.109386176,neg,ns,0.056641605,Sp8,Sp8_Promoter,12,118840372,118840421,118840420,118840421,50,-,GTGAGCTGGAAGGCTGGAGATCGAACGCCTGGAAGCCGACTTTCACCCCG,Promoter (5-6kb),12,118846329,118852576,6248,1,Sp8-201,-5957,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,27,29,320145,ENSMUSG00000048562,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
20708,cg06051234,-0.0000101,0.00000277,-3.651911417,0.000305464,loss,ns,0.00000517,0.00000471,1.09723557,0.273389991,pos,ns,0.002503905,0.001380287,1.814046355,0.070637253,pos,ns,1.150966196,-0.000120968,0.0000475,-2.548416146,0.011303349,neg,ns,0.936937308,Dab1,Dab1_Intron,4,104545723,104545772,104545723,104545724,50,+,CGCTGTCAGTCAATTTCACTTTTGTGAGAATTTTAAAGATGTATAAGCCC,"Intron (Dab1-202/Dab1, intron 4 of 9)",4,103619665,104680382,1060718,1,Dab1-202,926058,Dab1-202;Dab1-206;Dab1-207;Dab1-203;Dab1-201,Dab1;Dab1;Dab1;Dab1;Dab1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,13,13131,ENSMUSG00000028519,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14979,cg23527723,-0.0000395,0.0000135,-2.933880538,0.003597305,loss,ns,0.0000251,0.0000229,1.097227307,0.273393596,pos,ns,0.001984287,0.00670791,0.295812965,0.767570972,pos,ns,0.114881458,-0.000578058,0.000230684,-2.505837294,0.012728419,neg,ns,0.630891716,Ntrk3,Ntrk3_threeUTR,7,78302642,78302691,78302642,78302643,50,+,CGTCCTTTGCTGAAATAAACATTGACATCCTCAACATAGATGCCATGGTT,3' UTR,7,78175959,78578408,402450,2,Ntrk3-201,275717,Ntrk3-201;Ntrk3-206;Ntrk3-205;Ntrk3-202;Ntrk3-203;Ntrk3-216,Ntrk3;Ntrk3;Ntrk3;Ntrk3;Ntrk3;Ntrk3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,15,18213,ENSMUSG00000059146,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20807,cg12098453,0.0000497,0.0000069,7.215002198,4.17E-12,gain,yes,-0.0000129,0.0000117,-1.097065333,0.273464279,neg,ns,-0.006813503,0.003431872,-1.985360728,0.047985238,neg,ns,1.318892343,0.000246984,0.000118022,2.092702274,0.037188534,pos,ns,0.683886799,Fam160a2,Fam160a2_threeUTR,7,105381497,105381546,105381545,105381546,50,-,GCCCCGTCAGCAGGAAGTTGACATAGACGGAGTTCTGCAGCATGTTCTCG,3' UTR,7,105371211,105400054,28844,2,Fam160a2-208,18508,Fam160a2-208;Fam160a2-213;Fam160a2-206;Fam160a2-201;Fam160a2-203;Fam160a2-202;Fam160a2-204;Fam160a2-210;Fam160a2-207;Fam160a2-211;Fam160a2-212;Fam160a2-205;Gm5901-203;Gm5901-201;Gm5901-202,Fam160a2;Fam160a2;Fam160a2;Fam160a2;Fam160a2;Fam160a2;Fam160a2;Fam160a2;Fam160a2;Fam160a2;Fam160a2;Fam160a2;Gm5901;Gm5901;Gm5901,0;0;0;0;0;0;0;0;0;0;7968;7565;6459;6447;3674,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,5,5,74349,ENSMUSG00000044465,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7040,cg24206172,0.000116094,0.00000952,12.19831865,3.22E-28,gain,yes,-0.0000177,0.0000162,-1.09704103,0.273474886,neg,ns,0.010900466,0.004736822,2.301219418,0.022042368,pos,ns,1.656741746,-0.000141389,0.000162899,-0.867952931,0.386091498,neg,ns,0.361659975,Tfap2a,Tfap2a_threeUTR,13,40715581,40715630,40715629,40715630,50,+,AATTACTGTAACCATACTGAATAAAAAATACTGCCAAGAACAAAAATACG,3' UTR,13,40715302,40730443,15142,2,Tfap2a-201,14813,Tfap2a-201;Tfap2a-202;Tfap2a-205;Tfap2a-203;Tfap2a-209;Tfap2a-208;Tfap2a-206,Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,57,21418,ENSMUSG00000021359,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
22320,cg15233711,0.0000198,0.0000128,1.548348109,0.122558758,gain,ns,-0.0000239,0.0000218,-1.097029755,0.273479806,neg,ns,0.004979847,0.006378347,0.780742518,0.43554972,pos,ns,0.360962262,-0.000790982,0.000219351,-3.606015144,0.000362238,neg,ns,0.142253136,Arntl,Arntl_fiveUTR,7,113207441,113207490,113207489,113207490,50,+,GGGCACAGCGATTGGTGGGCGGGGGGCCGGGCCTGGGCCGGCGGGGAGCG,Promoter (<=1kb),7,113207465,113314126,106662,1,Arntl-201,0,Arntl-201;Arntl-203;Arntl-204,Arntl;Arntl;Arntl,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,6,11865,ENSMUSG00000055116,conserved gene but different region,7,113207255,113208466,1212,*,1212,121,0.691419142,0.844647948,0.099834984,1.89E-91,CpGisland,TRUE,U1,Pr-A
4451,cg16688147,0.0000247,0.00000983,2.517270245,0.012330868,gain,ns,-0.0000183,0.0000167,-1.096710567,0.273619137,neg,ns,0.013297442,0.004891015,2.718749252,0.006921985,pos,ns,2.159769355,-0.000405967,0.000168202,-2.413573854,0.016376466,neg,ns,0.232209214,Rnf32,Rnf32_Intergenic_upstream,5,28944198,28944247,28944198,28944199,50,-,CGTTGAGCCTGATGTAGCATGTTCCTCCGTAAATTTTAAAGGACTGCAGG,Distal Intergenic,5,29195992,29203135,7144,1,Rnf32-207,-251794,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,2,56874,ENSMUSG00000029130,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15403,cg16994460,0.0000523,0.00000587,8.911226738,4.40E-17,gain,yes,-0.0000109,0.00000997,-1.09645617,0.27373022,neg,ns,-0.00167258,0.002920285,-0.572745476,0.56723221,neg,ns,0.246239116,0.000173941,0.000100428,1.73199274,0.084269577,pos,ns,0.122270525,Nfatc1,Nfatc1_Promoter,18,80713664,80713713,80713712,80713713,50,-,TCATTATGTAAAATCGCAGGCTTCCCCCGCTGTGGAAATTTGGAAAAGCG,Promoter (<=1kb),18,80647435,80713071,65637,2,Nfatc1-206,-642,Nfatc1-204;Nfatc1-202;Nfatc1-206,Nfatc1;Nfatc1;Nfatc1,-898;-606;-593,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,1,18018,ENSMUSG00000033016,conserved gene and region,18,80713614,80713784,171,*,171,13,0.561403509,0.98015873,0.076023392,1.01E-08,CpGisland,TRUE,U3,Pr-B
2839,cg00493297,-0.00000893,0.00000296,-3.018139491,0.002754322,loss,ns,-0.00000551,0.00000503,-1.096396381,0.273756331,neg,ns,-0.003053311,0.001472792,-2.073145664,0.038984553,neg,ns,1.409107439,-0.0000267,0.0000506,-0.527634803,0.598130267,neg,ns,0.923375246,Plppr2,Plppr2_Exon,9,21940721,21940770,21940721,21940722,50,+,CGCCTGGAGTTCACGGACACCTTCCCTGTGCACACCCAGGGATTCTTCTG,"Exon (Plppr2-201/Plppr2, exon 4 of 10)",9,21937033,21948904,11872,1,Plppr2-201,3688,Ccdc159-201;Ccdc159-202;Ccdc159-204;Ccdc159-203;Plppr2-201;Plppr2-203;Plppr2-202,Ccdc159;Ccdc159;Ccdc159;Ccdc159;Plppr2;Plppr2;Plppr2,13250;13225;13087;13056;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,235044,ENSMUSG00000040563,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26301,cg11880609,-0.000018,0.00000385,-4.678001214,0.00000433,loss,ns,-0.00000717,0.00000654,-1.096333446,0.273783819,neg,ns,-0.00098845,0.001914802,-0.516215194,0.606072131,neg,ns,0.217475686,-0.000183753,0.0000658,-2.79048842,0.005588983,neg,ns,0.924635289,Ralgapa2,Ralgapa2_Intron,2,146324993,146325042,146325041,146325042,50,+,AATCTAACGAGGCGTCTGTGTCCCAGGGAGCCCGCAGCATGTCCCTGGCG,"Intron (Ralgapa2-202/Ralgapa2, intron 37 of 40)",2,146239879,146512004,272126,2,Ralgapa2-202,186962,Ralgapa2-202;Ralgapa2-211;Ralgapa2-210;Ralgapa2-205;Ralgapa2-208,Ralgapa2;Ralgapa2;Ralgapa2;Ralgapa2;Ralgapa2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,26,241694,ENSMUSG00000037110,conserved gene and region,2,146325000,146325095,96,*,96,8,0.65625,0.775757576,0.083333333,0.00000859,CpGisland,TRUE,U10,Tr-S
24109,cg19783020,0.000135334,0.0000348,3.888745098,0.000123311,gain,ns,-0.0000648,0.0000591,-1.096293848,0.273801114,neg,ns,0.021777115,0.017320995,1.257266936,0.209603367,pos,ns,0.678601745,-0.000959894,0.000595668,-1.611459284,0.108097288,neg,ns,0.564124829,Fnbp1l,Fnbp1l_Exon,3,122590186,122590235,122590234,122590235,50,-,ATCTTTCCAAGAAGTCAATTCCCCATTGTGTATGCTTGTCTAAGCTGTCG,"Exon (Fnbp1l-201/Fnbp1l, exon 2 of 14)",3,122538725,122619715,80991,2,Fnbp1l-201,29480,Fnbp1l-201;Fnbp1l-203;Fnbp1l-206,Fnbp1l;Fnbp1l;Fnbp1l,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,214459,ENSMUSG00000039735,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7527,cg06439535,0.000019,0.00000976,1.948496429,0.052257622,gain,ns,0.0000182,0.0000166,1.09625482,0.273818162,pos,ns,0.023766123,0.004858313,4.89184666,0.00000161,pos,ns,5.793768419,-0.000595177,0.000167077,-3.562289727,0.000425426,neg,ns,0.263953207,Sobp,Sobp_threeUTR,10,43003536,43003585,43003584,43003585,50,+,GGCATTTTGGTCTTCAGTTCAACACTCTTGCTCTGTTCCCAAATGGGGCG,3' UTR,10,43002500,43174530,172031,2,Sobp-201,170945,Sobp-201,Sobp,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,19,109205,ENSMUSG00000038248,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
1787,cg26803233,-0.0000272,0.0000085,-3.195718074,0.001538566,loss,ns,0.0000158,0.0000144,1.096046984,0.273908957,pos,ns,0.000129904,0.004229138,0.030716441,0.975515445,pos,ns,0.01076585,-0.0000967,0.00014544,-0.664695769,0.506739247,neg,ns,0.884401002,Foxp2,Foxp2_Intron,6,15201659,15201708,15201707,15201708,50,+,TTTTATTTATCTGTATTTGCATTCAATCCTTTCACATTTGTTATCTCTCG,"Intron (Foxp2-207/Foxp2, intron 4 of 18)",6,14901349,15441977,540629,1,Foxp2-207,300310,Foxp2-207;Foxp2-213;Foxp2-208;Foxp2-211;Foxp2-217;Foxp2-203;Foxp2-216;Foxp2-205;Foxp2-204;Foxp2-201;Foxp2-210;Foxp2-214;Foxp2-212;Foxp2-209;Foxp2-202,Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,38,65,114142,ENSMUSG00000029563,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15651,cg13518604,0.0000363,0.00000369,9.857326676,4.07E-20,gain,yes,-0.00000686,0.00000626,-1.095962852,0.273945716,neg,ns,0.005682931,0.00183432,3.098113442,0.002125912,pos,ns,2.672454779,-0.000186438,0.0000631,-2.955473947,0.003361298,neg,ns,0.03824983,Nfib,Nfib_fiveUTR,4,82504728,82504777,82504776,82504777,50,-,TACCTGAGTGAGACAGATGGGAGAATACATCATGACTTCGCCTTAAAACG,Promoter (<=1kb),4,82290173,82505308,215136,2,Nfib-201,531,Nfib-201;Nfib-203;Nfib-202;Nfib-205;Nfib-206;Nfib-204;Nfib-207;Nfib-209;Nfib-210;Nfib-208;Nfib-212,Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,66,18028,ENSMUSG00000008575,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
15675,cg26492710,-0.00000302,0.00000173,-1.746198425,0.081767029,loss,ns,-0.00000322,0.00000294,-1.095844817,0.273997295,neg,ns,0.000413534,0.000861828,0.47983374,0.631683988,pos,ns,0.199500132,-0.00000077,0.0000296,-0.025976494,0.9792928,neg,ns,0.956748118,Zfp330,Zfp330_Exon,8,82770821,82770870,82770869,82770870,50,-,AACTTCTGTACAGAATTACAAAAGTAGCAAAATGCTCTATTCTTCTGCCG,Promoter (<=1kb),8,82763621,82771039,7419,2,Zfp330-203,169,Zfp330-206;Zfp330-203;Zfp330-201;Zfp330-204;Zfp330-207;Zfp330-202;Zfp330-205,Zfp330;Zfp330;Zfp330;Zfp330;Zfp330;Zfp330;Zfp330,-848;0;0;-3284;0;-1349;3275,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,30932,ENSMUSG00000031711,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
522,cg27325093,-0.0000175,0.00000805,-2.170064848,0.030761052,loss,ns,0.000015,0.0000137,1.095693904,0.27406325,pos,ns,-0.001880152,0.004008409,-0.469051886,0.639362247,neg,ns,0.194253011,-0.000145556,0.000137849,-1.05591051,0.291831297,neg,ns,0.681169899,St18,St18_Intron,1,6757842,6757891,6757890,6757891,50,+,AAACTGGCCCCCCAAAGCAAATTATAAATCCATTTGCATTAACCATTTCG,"Intron (St18-208/St18, intron 4 of 23)",1,6487231,6860934,373704,1,St18-208,270611,St18-208;St18-204;St18-201;St18-206;St18-203;St18-210;St18-212;St18-207;St18-213,St18;St18;St18;St18;St18;St18;St18;St18;St18,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,20,240690,ENSMUSG00000033740,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2101,cg09172296,0.000117164,0.0000288,4.072326933,0.0000592,gain,ns,-0.0000536,0.0000489,-1.095622391,0.274094508,neg,ns,0.002100285,0.014319503,0.146673053,0.883485426,pos,ns,0.05380061,0.000481474,0.000492447,0.977717459,0.328976448,pos,ns,0.706055269,Skida1,Skida1_fiveUTR,2,18048777,18048826,18048777,18048778,50,-,CGCCGCTGCTTTAGCTACAAATAAAATGACAGAGTGAAGTGAGCTCGTCC,Promoter (<=1kb),2,18047716,18048784,1069,2,Skida1-203,0,Skida1-205;Skida1-202;Skida1-201;Skida1-203;Skida1-204,Skida1;Skida1;Skida1;Skida1;Skida1,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,8,31,72668,ENSMUSG00000054074,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
9065,cg17257373,-0.00000103,0.00000151,-0.682952034,0.495147216,loss,ns,0.00000281,0.00000256,1.095172064,0.2742914,pos,ns,-0.000335189,0.000751217,-0.446195178,0.655767764,neg,ns,0.183249936,0.0000371,0.0000258,1.435303444,0.152208813,pos,ns,0.03638842,Cnnm2,Cnnm2_fiveUTR,19,46761765,46761814,46761813,46761814,50,-,GCCACCCTATGATTGGCTGTGGCGCTTGTGAACCCAAAGTAAAGATGGCG,Promoter (<=1kb),19,46761596,46880192,118597,1,Cnnm2-202,169,Cnnm2-202;Cnnm2-201;Cnnm2-203,Cnnm2;Cnnm2;Cnnm2,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,8,94219,ENSMUSG00000064105,conserved gene but different region,19,46761787,46762230,444,*,444,53,0.711711712,0.953677812,0.119369369,5.86E-45,CpGisland,TRUE,U1,Pr-A
13693,cg14070195,-0.00000543,0.00000351,-1.548045299,0.122631638,loss,ns,-0.00000653,0.00000596,-1.095003907,0.274364947,neg,ns,0.001536251,0.001746666,0.879532967,0.37979364,pos,ns,0.420452312,-0.0000631,0.0000601,-1.050723935,0.29420379,neg,ns,0.964090806,Mctp2,Mctp2_Intron,7,72145795,72145844,72145795,72145796,50,+,CGAATATGCATAATGAACCATATGCCCAAAGGGCCTGTTCTTCATGTGGG,"Intron (Mctp2-201/Mctp2, intron 17 of 22)",7,72077830,72306608,228779,2,Mctp2-201,160764,Mctp2-201;Mctp2-202,Mctp2;Mctp2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,5,244049,ENSMUSG00000032776,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27334,cg12326147,-0.00000287,0.000000759,-3.783755409,0.000185398,loss,ns,-0.00000141,0.00000129,-1.094809929,0.274449803,neg,ns,-0.0000589,0.000377689,-0.15594812,0.876175417,neg,ns,0.057408936,-0.0000147,0.000013,-1.131201165,0.258844774,neg,ns,0.978269185,Ncoa5,Ncoa5_Exon,2,165023127,165023176,165023175,165023176,50,+,CGGCTTCAGGGTACTTTACCTTCGTGTGGGGCTGGGTCTTGATGGAGCCG,"Exon (Ncoa5-201/Ncoa5, exon 2 of 8)",2,165000357,165034867,34511,2,Ncoa5-201,11691,Ncoa5-201;Ncoa5-202;Ncoa5-203;Ncoa5-206;Ncoa5-208;Ncoa5-205;Ncoa5-207,Ncoa5;Ncoa5;Ncoa5;Ncoa5;Ncoa5;Ncoa5;Ncoa5,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,7,228869,ENSMUSG00000039804,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11598,cg08489213,-0.0000011,0.000000708,-1.556182735,0.120684933,loss,ns,0.00000132,0.0000012,1.094789195,0.274458874,pos,ns,0.000669358,0.000352141,1.900823789,0.058252432,pos,ns,1.23468594,-0.0000302,0.0000121,-2.49136793,0.013247871,neg,ns,0.977802307,Arih1,Arih1_threeUTR,9,59396541,59396590,59396541,59396542,50,+,CGCAGGCTCTGCATGTGGTTCATATAGCGATTACAGTAGAACAGGTACCT,3' UTR,9,59388258,59486614,98357,2,Arih1-207,90024,Arih1-207;Arih1-201;Arih1-202;Arih1-206;Arih1-203,Arih1;Arih1;Arih1;Arih1;Arih1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,13,23806,ENSMUSG00000025234,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15142,cg17899964,-0.00003,0.00000816,-3.674854249,0.00028033,loss,ns,0.0000152,0.0000139,1.094691894,0.274501447,pos,ns,-0.002930667,0.004061783,-0.721522142,0.471132153,neg,ns,0.326857256,-0.0000423,0.000139684,-0.302994004,0.762097654,neg,ns,0.835986058,Gm48470,Gm48470_Intergenic_downstream,13,79364341,79364390,79364389,79364390,50,+,CAGTGTGGAGATAATTATCTGATATCTGAATCCAACTTCTGCTTACTTCG,Distal Intergenic,13,79441143,79441407,265,2,Gm48470-201,77017,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,20,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16941,cg26612604,-0.000000153,0.00000424,-0.036082057,0.971240153,loss,ns,-0.00000789,0.00000721,-1.094627617,0.274529573,neg,ns,-0.003990785,0.002111472,-1.890048943,0.059684125,neg,ns,1.224141172,0.0000132,0.0000726,0.182321386,0.855449684,pos,ns,0.896507148,Calm2,Calm2_Intergenic_upstream,17,87522081,87522130,87522129,87522130,50,+,AAAGGAATGTAATTAGGTTGTCATCCTGGGGCCTCCGAGCCAGGCTTCCG,Distal Intergenic,17,87435626,87446935,11310,2,Calm2-205,-75146,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,3,12314,ENSMUSG00000036438,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16431,cg19662734,-0.0000119,0.00000609,-1.947456838,0.052382597,loss,ns,-0.0000113,0.0000103,-1.094587392,0.274547176,neg,ns,-0.006889615,0.003028915,-2.274615241,0.023611918,neg,ns,1.626868727,0.000190754,0.000104164,1.831286666,0.068017364,pos,ns,0.899974384,Cntln,Cntln_Intron,4,84987687,84987736,84987687,84987688,50,+,CGGCTTTCTGCTGGCTAGAAATGAGGGAGAAGCTAAAACACTCCCTCATC,"Intron (Cntln-201/Cntln, intron 8 of 25)",4,84884309,85131921,247613,1,Cntln-201,103378,Cntln-201;Cntln-204,Cntln;Cntln,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,25,338349,ENSMUSG00000038070,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24006,cg00989791,-0.000000443,0.000000523,-0.846299142,0.398038688,loss,ns,-0.000000973,0.000000889,-1.094568053,0.274555639,neg,ns,-0.0000025,0.000260342,-0.009617099,0.99233297,neg,ns,0.003342579,-0.00000378,0.00000895,-0.422560679,0.672908762,neg,ns,0.9927988,Atxn2,Atxn2_Exon,5,121813532,121813581,121813580,121813581,50,+,CCCTATATGACGCACCCTTCAGGTGAGGCGTGTGTGTGCAGGGGCCGCCG,"Exon (Atxn2-201/Atxn2, exon 24 of 25)",5,121711609,121814950,103342,1,Atxn2-201,101923,Atxn2-201;Atxn2-209;Atxn2-214;Atxn2-215;Atxn2-217;Atxn2-210;Atxn2-203;Atxn2-206;Atxn2-212;Atxn2-211;Atxn2-205;Atxn2-218;Sh2b3-205;Sh2b3-202;Sh2b3-208;Sh2b3-204;Sh2b3-201;Sh2b3-203,Atxn2;Atxn2;Atxn2;Atxn2;Atxn2;Atxn2;Atxn2;Atxn2;Atxn2;Atxn2;Atxn2;Atxn2;Sh2b3;Sh2b3;Sh2b3;Sh2b3;Sh2b3;Sh2b3,0;0;0;11786;11421;0;0;0;2868;2567;0;0;23244;23278;15160;22523;23269;23236,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,16,20239,ENSMUSG00000042605,conserved gene but different region,5,121813431,121813604,174,*,174,15,0.632183908,0.881458967,0.086206897,8.65E-11,CpGisland,TRUE,U10,Tr-S
23135,cg08390012,0.0000808,0.0000196,4.114706686,0.0000497,gain,ns,-0.0000365,0.0000334,-1.094392007,0.274632687,neg,ns,0.035414718,0.00977784,3.621936863,0.000341505,pos,ns,3.466603188,-0.001044433,0.000336259,-3.106036322,0.002071456,neg,ns,0.46068178,Rnf220,Rnf220_Intron,4,117317712,117317761,117317712,117317713,50,-,CGCATCAGATTGGCCCCATCTGTAGCTGCCTGTAATCATTTTCAATTGCG,"Intron (Rnf220-201/Rnf220, intron 2 of 14)",4,117271463,117497052,225590,2,Rnf220-201,179291,Rnf220-201;Rnf220-202;Rnf220-207,Rnf220;Rnf220;Rnf220,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
14988,cg04968468,-0.00000467,0.00000188,-2.483144902,0.013551397,loss,ns,-0.00000349,0.00000319,-1.094363288,0.274645257,neg,ns,-0.000596044,0.000935448,-0.637175232,0.524480983,neg,ns,0.280270254,-0.000034,0.0000322,-1.058046344,0.290858069,neg,ns,0.96256361,Slc14a2,Slc14a2_Intron,18,78378119,78378168,78378119,78378120,50,+,CGAGGATGATTAACTCTGACTGGTGGAATAAAAGGCCACGACCAATTATT,"Intron (Slc14a2-206/Slc14a2, intron 2 of 21)",18,78146148,78596942,450795,2,Slc14a2-206,218774,Slc14a2-206;Slc14a2-203,Slc14a2;Slc14a2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,12,27411,ENSMUSG00000024552,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19383,cg17117401,-0.00000633,0.00000748,-0.845253721,0.398621094,loss,ns,0.0000139,0.0000127,1.094307497,0.274669678,pos,ns,0.001948651,0.003724749,0.523162933,0.601234612,pos,ns,0.220956026,-0.0000781,0.000128094,-0.60999185,0.54231408,neg,ns,0.844342403,Spats2,Spats2_Exon,15,99186021,99186070,99186021,99186022,50,+,CGAGTTGTAGTTAAAGAAGAGATGGATGCCTCCATTAAGAAAATGAAACA,"Exon (Spats2-204/Spats2, exon 8 of 8)",15,99125921,99186022,60102,1,Spats2-204,60100,Spats2-204;Spats2-201;Spats2-205,Spats2;Spats2;Spats2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,72572,ENSMUSG00000051934,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9904,cg06942745,-0.00000785,0.00000222,-3.528485134,0.000481215,loss,ns,0.00000414,0.00000378,1.094287025,0.27467864,pos,ns,0.001492417,0.001107402,1.347674113,0.178747291,pos,ns,0.747760532,-0.0000981,0.0000381,-2.576254701,0.010450337,neg,ns,0.93652617,Ppargc1a,Ppargc1a_threeUTR,5,51473510,51473559,51473558,51473559,50,-,ACTGCCTGGAGACCTTGATCTTGACCTGGAATATGGTGATCGGGAACACG,3' UTR,5,51454250,51553922,99673,2,Ppargc1a-203,80363,Ppargc1a-203;Ppargc1a-201;Ppargc1a-205;Ppargc1a-204,Ppargc1a;Ppargc1a;Ppargc1a;Ppargc1a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,13,19017,ENSMUSG00000029167,conserved gene and region,5,51473550,51473706,157,*,157,11,0.496815287,1.233571429,0.070063694,0.000000442,CpGisland,TRUE,NA,NRS
23037,cg24325388,0.000000529,0.00000308,0.171832793,0.8636811,gain,ns,0.00000573,0.00000523,1.094258072,0.274691314,pos,ns,0.003273312,0.001533677,2.134289576,0.033603403,pos,ns,1.473616735,-0.0000621,0.0000527,-1.17690297,0.240137092,neg,ns,0.952961924,Frs2,Frs2_Exon,10,117081035,117081084,117081035,117081036,50,+,CGATGGTTATCTGGGACAGTGTCTTTATCTGGACAGCTACAACAGCTACC,"Exon (Frs2-201/Frs2, exon 6 of 10)",10,117069427,117148510,79084,2,Frs2-201,67426,Frs2-201;Frs2-204;Frs2-202,Frs2;Frs2;Frs2,0;67411;49762,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,327826,ENSMUSG00000020170,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23523,cg17361893,-0.0000065,0.00000152,-4.273867885,0.0000256,loss,ns,0.00000283,0.00000258,1.094257098,0.274691741,pos,ns,0.000622881,0.000757312,0.822489022,0.411430825,pos,ns,0.385703174,-0.0000418,0.000026,-1.603854807,0.10976436,neg,ns,0.95727037,Med13l,Med13l_Exon,5,118754280,118754329,118754328,118754329,50,-,GGAGAATGTTCACTACAGACAATCAGCAAAAAGCTCAAGGATGTGTGCCG,"Exon (Med13l-201/Med13l, exon 26 of 31)",5,118560719,118765438,204720,1,Med13l-201,193561,Med13l-201;Med13l-202;Med13l-205;Med13l-206,Med13l;Med13l;Med13l;Med13l,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,16,76199,ENSMUSG00000018076,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21025,cg26509633,-0.0000229,0.00000933,-2.450254515,0.014828066,loss,ns,0.0000173,0.0000159,1.094017801,0.27479651,pos,ns,-0.007477118,0.004645545,-1.609524405,0.108519535,neg,ns,0.964492075,0.00011501,0.00015976,0.719891825,0.472134003,pos,ns,0.800611464,Vrk1,Vrk1_Intergenic_downstream,12,106129208,106129257,106129256,106129257,50,-,CCAGCCCTGGCACCCTGGTGCCTGTGATCTTTCTGAAGATTCAGGGCACG,Distal Intergenic,12,106030717,106075409,44693,1,Vrk1-204,98540,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,29,37,22367,ENSMUSG00000021115,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20035,cg08170008,-0.0000235,0.00000488,-4.811338266,0.00000235,loss,ns,0.00000907,0.00000829,1.093970977,0.274817014,pos,ns,-0.002982067,0.002427638,-1.228381906,0.220235397,neg,ns,0.657112878,0.0000713,0.0000835,0.854022288,0.393752092,pos,ns,0.870077481,Atxn7l3,Atxn7l3_fiveUTR,11,102294974,102295023,102295022,102295023,50,-,GACAAAGACATTTCCTCCATTTTCATTTGTAAACTCTTGTGGAGACGGCG,Promoter (<=1kb),11,102289300,102294987,5688,2,Atxn7l3-204,0,Atxn7l3-206;Atxn7l3-205;Atxn7l3-204;Atxn7l3-203;Atxn7l3-201;Atxn7l3-202,Atxn7l3;Atxn7l3;Atxn7l3;Atxn7l3;Atxn7l3;Atxn7l3,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,7,217218,ENSMUSG00000059995,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
18074,cg00716140,-0.00000193,0.00000587,-0.328620437,0.742664474,loss,ns,0.0000109,0.00000998,1.093843072,0.274873028,pos,ns,-0.002542024,0.002923435,-0.869533393,0.3852282,neg,ns,0.414281929,0.0000673,0.000100537,0.66898678,0.504001794,pos,ns,0.884871841,Pola1,Pola1_Intron,X,93497819,93497868,93497867,93497868,50,+,TCCTGACTTCTTAATTCCTGGGCTCAGCTCAGTGAGAGCCCTTCACGCCG,"Intron (Pola1-201/Pola1, intron 26 of 36)",20,93304767,93632155,327389,2,Pola1-201,134287,Pola1-201,Pola1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,59,62,18968,ENSMUSG00000006678,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8883,cg02631092,0.0000964,0.0000177,5.458648357,9.84E-08,gain,yes,-0.0000328,0.00003,-1.093798661,0.274892479,neg,ns,0.05904381,0.008789764,6.717337141,8.86E-11,pos,yes,10.05276759,-0.001510086,0.000302279,-4.995663634,0.000000981,neg,yes,0.445626139,Gbf1,Gbf1_Intron,19,46244713,46244762,46244761,46244762,50,-,ATGCTACCCAATCTGCCAATTAATTAAAGCGTTAATCTGAGGAGCAGCCG,"Intron (Gbf1-201/Gbf1, intron 3 of 39)",19,46152509,46286510,134002,1,Gbf1-201,92204,Gbf1-201;Gbf1-204;Gbf1-214;Gbf1-207;Gbf1-213,Gbf1;Gbf1;Gbf1;Gbf1;Gbf1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,18,107338,ENSMUSG00000025224,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1214,cg19068645,-0.000027,0.0000181,-1.495008435,0.135929484,loss,ns,0.0000336,0.0000307,1.093777166,0.274901894,pos,ns,0.032975156,0.009002287,3.662975295,0.00029309,pos,ns,3.532998669,-0.000756388,0.000309588,-2.443210259,0.015114957,neg,ns,0.460895878,Bcor,Bcor_Intron,X,12068051,12068100,12068099,12068100,50,-,TGAGGCCTGCCTCGGAGCACGATAACAAGTGACTAATACATTGCATATCG,"Intron (Bcor-202/Bcor, intron 1 of 14)",20,12036740,12080553,43814,2,Bcor-202,12453,Bcor-202;Bcor-203;Bcor-204;Bcor-206;Bcor-201;Bcor-207;Bcor-205,Bcor;Bcor;Bcor;Bcor;Bcor;Bcor;Bcor,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,56,74,71458,ENSMUSG00000040363,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
13241,cg12723445,0.0000568,0.0000113,5.018345067,0.00000088,gain,yes,-0.000021,0.0000192,-1.093706318,0.274932926,neg,ns,0.002858902,0.005634485,0.507393737,0.61223935,pos,ns,0.213078761,0.000124316,0.000193769,0.64156527,0.52162956,pos,ns,0.624876764,Nlgn2,Nlgn2_Exon,11,69833991,69834040,69834039,69834040,50,+,TGGGCACGTAGAGGTTGAGGTACAGGCAGTCCTCGCTCTGGTTCTGCACG,Promoter (<=1kb),11,69823122,69834849,11728,2,Nlgn2-201,809,Nlgn2-201;Nlgn2-202;Nlgn2-203;Tmem256-203;Tmem256-201;Tmem256-205;Tmem256-204;Tmem256-202,Nlgn2;Nlgn2;Nlgn2;Tmem256;Tmem256;Tmem256;Tmem256;Tmem256,0;0;0;-4474;-4484;-4515;-4523;-4598,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,17,216856,ENSMUSG00000051790,conserved gene and region,11,69833903,69834425,523,*,523,51,0.709369025,0.77609986,0.09751434,2.27E-38,CpGisland,TRUE,NA,NRS
3940,cg17094144,-0.00000183,0.00000362,-0.50553295,0.613543809,loss,ns,0.00000673,0.00000615,1.093679558,0.274944648,pos,ns,0.001350301,0.00180221,0.749247442,0.454276238,pos,ns,0.34267998,0.0000111,0.000062,0.178942137,0.858100029,pos,ns,0.474985827,Adgrb3,Adgrb3_fiveUTR,1,25829471,25829520,25829471,25829472,50,-,CGAAAGCTCAGGGAGGCTCTTGCTCTAAGACACCAGCACAGGCACGCGTC,Promoter (<=1kb),1,25067550,25829511,761962,2,Adgrb3-205,0,Adgrb3-206;Adgrb3-205;Adgrb3-207;Adgrb3-201;Adgrb3-210,Adgrb3;Adgrb3;Adgrb3;Adgrb3;Adgrb3,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,7,25,210933,ENSMUSG00000033569,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
8745,cg25707373,0.0000878,0.0000109,8.047644874,1.82E-14,gain,yes,0.0000203,0.0000185,1.093632358,0.274965324,pos,ns,0.000329848,0.005431682,0.060726716,0.951615986,pos,ns,0.021538271,0.000148175,0.000186795,0.79325109,0.42823826,pos,ns,0.571814947,Tmem63b,Tmem63b_Exon,17,45663557,45663606,45663605,45663606,50,+,TCATGTACATGAGCAGGCCTGGGATGCGCAGCAGGTCCATGGCGTTGCCG,"Exon (Gm16172-201/Gm16172-201, exon 1 of 2)",17,45660171,45686259,26089,2,Tmem63b-201,22653,Capn11-201;Capn11-202;Tmem63b-201;Tmem63b-208;Tmem63b-203;Tmem63b-207,Capn11;Capn11;Tmem63b;Tmem63b;Tmem63b;Tmem63b,-4232;-4260;0;0;2848;22367,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,12,224807,ENSMUSG00000036026,conserved gene and region,17,45663471,45663654,184,*,184,20,0.614130435,1.163820367,0.108695652,2.52E-16,CpGisland,TRUE,NA,NRS
16196,cg14104318,-0.00000254,0.00000441,-0.576431348,0.564741946,loss,ns,0.0000082,0.0000075,1.093600481,0.274979288,pos,ns,0.002833273,0.00219721,1.289486952,0.198190091,pos,ns,0.702918063,-0.0000683,0.0000756,-0.904331027,0.366522136,neg,ns,0.894174534,Lhx1,Lhx1_Intergenic_upstream,11,84579092,84579141,84579140,84579141,50,+,CCAAGTTACCATTGATACAGTGGTGCCGGGTGATTCAATTAGTGCAGCCG,Distal Intergenic,11,84518284,84525535,7252,2,Lhx1-201,-53557,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,20,23,16869,ENSMUSG00000018698,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16428,cg03123085,-0.00000315,0.00000121,-2.604547028,0.009642845,loss,ns,0.00000225,0.00000206,1.093580781,0.274987919,pos,ns,-0.000189535,0.000602856,-0.314394885,0.753432624,neg,ns,0.122955578,-0.0000283,0.0000207,-1.367015069,0.172611052,neg,ns,0.968512346,Cntln,Cntln_Intron,4,84987416,84987465,84987416,84987417,50,+,CGCTTCACATTACACAGATGTGAAGGCCTGATTATAGCTGCTTCATAATT,"Intron (Cntln-201/Cntln, intron 8 of 25)",4,84884309,85131921,247613,1,Cntln-201,103107,Cntln-201;Cntln-204,Cntln;Cntln,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,25,338349,ENSMUSG00000038070,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24638,cg20070619,-0.00000916,0.00000585,-1.564746694,0.118662525,loss,ns,0.0000109,0.00000994,1.093508726,0.275019486,pos,ns,-0.001491996,0.002912411,-0.51228896,0.608813575,neg,ns,0.215515672,-0.00000239,0.000100158,-0.023825336,0.981007259,neg,ns,0.888275753,Pard3,Pard3_Exon,8,127409596,127409645,127409596,127409597,50,+,CGAGAAGGATTTGGACGTCAGAGTATGTCAGAAAAACGCACAAAGCAATT,"Exon (Pard3-219/Pard3, exon 17 of 25)",8,127063893,127611970,548078,1,Pard3-219,345703,Pard3-219;Pard3-202;Pard3-209;Pard3-211;Pard3-222;Pard3-201;Pard3-224;Pard3-210;Pard3-216;Pard3-223;Pard3-221;Pard3-213;Pard3-206;Pard3-214;Pard3-220;Pard3-215;Pard3-227,Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,8,93742,ENSMUSG00000025812,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15088,cg00623391,-0.000027,0.0000115,-2.353182252,0.01923792,loss,ns,0.0000213,0.0000195,1.093448396,0.275045919,pos,ns,-0.004912777,0.005701507,-0.861662871,0.389539075,neg,ns,0.409448972,0.0000782,0.000196074,0.398914278,0.690231016,pos,ns,0.79532291,Gm8345,Gm8345_Intergenic_upstream,13,79047184,79047233,79047184,79047185,50,-,CGTTTGCTACAGCAGAGTGGGCACAAATCATCCATTCTTAATTAAAAGAT,Distal Intergenic,13,78953088,78954792,1705,2,Gm8345-201,-92441,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,13,666883,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27177,cg02633042,-0.0000476,0.00000854,-5.569571414,5.54E-08,loss,yes,0.0000159,0.0000145,1.093248854,0.275133359,pos,ns,-0.008666668,0.004250742,-2.038859957,0.042312053,neg,ns,1.373535899,0.000187365,0.000146183,1.281718094,0.200899354,pos,ns,0.861530047,Gm826,Gm826_Intergenic_downstream,2,160300506,160300555,160300554,160300555,50,-,TACAGCCCATGAACTAAATTGACTGAGGCCCCTAATTAACCTGAAACACG,Distal Intergenic,2,160311393,160313616,2224,2,Gm826-202,13110,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,3,329554,ENSMUSG00000074623,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9696,cg05865029,-0.0000166,0.00000571,-2.9149182,0.003816942,loss,ns,0.0000106,0.0000097,1.093094828,0.275200866,pos,ns,-0.002858882,0.002841398,-1.006153285,0.315126542,neg,ns,0.501515016,-0.000184005,0.0000977,-1.883068453,0.060627213,neg,ns,0.80241908,Gm7481,Gm7481_Intergenic_upstream,12,50112403,50112452,50112451,50112452,50,+,TTGTTTTCCATACAAACCTACAGGCTGCCATTATAGCCACCCACATTCCG,Distal Intergenic,12,49840757,49841751,995,2,Gm7481-201,-270652,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,27,37,665077,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1439,cg06727176,-0.00000254,0.00000145,-1.758814617,0.079595601,loss,ns,-0.00000269,0.00000246,-1.092871731,0.275298666,neg,ns,-0.001459227,0.00071982,-2.027209868,0.043496353,neg,ns,1.361547158,0.000063,0.0000248,2.543966697,0.011445299,pos,ns,0.968809211,Drosha,Drosha_Exon,15,12935033,12935082,12935033,12935034,50,-,CGGAAGTACAGACAAGAGTTAAAAGAAATGAGGTGGGAAAGAGAGCATCA,"Exon (Drosha-207/Drosha, exon 35 of 35)",15,12824815,12935290,110476,1,Drosha-207,110218,Drosha-207;Drosha-201,Drosha;Drosha,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,14000,ENSMUSG00000022191,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26139,cg07257635,0.00000504,0.00000209,2.418449683,0.016162737,gain,ns,-0.00000387,0.00000354,-1.092735834,0.275358252,neg,ns,0.000651265,0.00103784,0.627519544,0.530780669,pos,ns,0.275084903,-0.00000822,0.0000357,-0.230264383,0.81803821,neg,ns,0.943062721,Lmo4,Lmo4_Intergenic_downstream,3,144186958,144187007,144186958,144186959,50,-,CGGGTTTTATTGTTTGAAATGCCTCTGGTTTCAAGAAAGTGTTTTACCTA,Distal Intergenic,3,144189062,144194818,5757,2,Lmo4-206,7860,Lmo4-203;Lmo4-201;Lmo4-202;Lmo4-207;Lmo4-206,Lmo4;Lmo4;Lmo4;Lmo4;Lmo4,0;0;0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,54,16911,ENSMUSG00000028266,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4140,cg08389341,0.00000521,0.00000409,1.27227893,0.204227526,gain,ns,-0.0000076,0.00000695,-1.092610434,0.275413243,neg,ns,-0.003205496,0.002036939,-1.57368298,0.116580757,neg,ns,0.93337313,0.0000436,0.0000701,0.622815867,0.533863418,pos,ns,0.904771258,Syngap1,Syngap1_Exon,17,26961573,26961622,26961573,26961574,50,-,CGGACATCACAGAGCCAGAGCAGAAGATGCTGAGTGTCAACAAGAGTGTG,"Exon (Syngap1-204/Syngap1, exon 15 of 19)",17,26941253,26972434,31182,1,Syngap1-204,20320,Syngap1-204;Syngap1-213;Syngap1-208;Syngap1-202;Syngap1-207;Syngap1-203;Syngap1-201;Syngap1-212;Syngap1-214;Syngap1-211;Syngap1-205;Syngap1-206;Syngap1-209;Syngap1-210,Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1,0;0;0;0;0;0;0;0;0;0;1735;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,18,240057,ENSMUSG00000067629,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12779,cg02503970.1,-0.000018,0.00000832,-2.159456143,0.031581448,loss,ns,0.0000154,0.0000141,1.092528175,0.27544932,pos,ns,0.002093668,0.004141173,0.505573557,0.613515329,pos,ns,0.212174582,-0.000124108,0.000142415,-0.87145826,0.38417838,neg,ns,0.056242685,St3gal1,St3gal1_fiveUTR,15,67176693,67176742,67176741,67176742,50,-,GGCTCTTTGTCTTTGCAAAGTGTCGAAACTGTCTGGCATAGTGGGCTCCG,Promoter (<=1kb),15,67106285,67176712,70428,2,St3gal1-204,0,St3gal1-202;St3gal1-204;St3gal1-203,St3gal1;St3gal1;St3gal1,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,3,20442,ENSMUSG00000013846,conserved gene and region,15,67176651,67176998,348,*,348,33,0.692528736,0.796946565,0.094827586,1.34E-24,CpGisland,TRUE,U1,Pr-A
21383,cg06722343,-0.00000151,0.00000759,-0.199439055,0.842050065,loss,ns,-0.0000141,0.0000129,-1.092386457,0.275511481,neg,ns,0.003058198,0.00377796,0.809483903,0.418857737,pos,ns,0.377933458,-0.000431122,0.000129924,-3.318267323,0.001013646,neg,ns,0.805868045,Lrrn1,Lrrn1_Exon,6,107567446,107567495,107567494,107567495,50,+,TAACCTCTCTAGTGACACACAAGTGCTTCTCTTACAGAGCAATAACATCG,"Exon (Lrrn1-201/Lrrn1, exon 2 of 2)",6,107529768,107570214,40447,1,Lrrn1-201,37678,Lrrn1-201,Lrrn1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,16979,ENSMUSG00000034648,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18144,cg03365311,0.0000214,0.00000409,5.22909734,0.000000314,gain,yes,-0.0000076,0.00000696,-1.092316028,0.275542376,neg,ns,0.003037844,0.00203796,1.490629683,0.137075529,pos,ns,0.863040069,-0.0000446,0.0000701,-0.635686523,0.52544975,neg,ns,0.04020773,Hsd17b12,Hsd17b12_Exon,2,94241383,94241432,94241431,94241432,50,+,TTGGGGTAAGGGCTTCCGGCTATTGAGTTATGTACAGCAAGCCCAGACCG,"Exon (Mir129b-201/Mir129b-201, exon 1 of 1)",2,94032689,94157964,125276,2,Hsd17b12-201,-83419,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,19,56348,ENSMUSG00000027195,mapped to different genes,2,94241115,94241769,655,*,655,63,0.630534351,0.978307255,0.096183206,7.48E-47,CpGisland,TRUE,U3,Pr-B
17859,cg07136911,0.0000173,0.00000948,1.821422096,0.069506407,gain,ns,-0.0000176,0.0000161,-1.092255803,0.275568798,neg,ns,0.005666305,0.004717456,1.201135738,0.230615456,pos,ns,0.637111589,-0.00049943,0.000162233,-3.078475948,0.002266619,neg,ns,0.149995157,Gm8512,Gm8512_Exon,10,92165159,92165208,92165159,92165160,50,+,CGTGCAGAATACAGGTACCTATTGTTCCAGAGACAGATATGTAGCCAGCC,"Exon (Rmst-209/Rmst-209, exon 1 of 13)",10,92223004,92223474,471,2,Gm8512-201,58266,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,5,667203,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14851,cg07714959,-0.00000642,0.00000246,-2.607017918,0.009575049,loss,ns,0.00000457,0.00000418,1.0920969,0.275638518,pos,ns,0.003451418,0.001225432,2.816492283,0.005166444,pos,ns,2.28680828,-0.000127311,0.0000421,-3.020954905,0.002729575,neg,ns,0.060176807,Phf12,Phf12_Exon,11,77984016,77984065,77984064,77984065,50,-,CAAATCCAAGCTCTGCTGGCTCCCCCCAAGACGGACGAGGCAGAAAAGCG,"Exon (Phf12-202/Phf12, exon 2 of 11)",11,77982754,78026214,43461,1,Phf12-202,1262,Phf12-202;Phf12-201;Sez6-202;Sez6-207;Sez6-201;Sez6-208,Phf12;Phf12;Sez6;Sez6;Sez6;Sez6,0;0;0;0;0;30163,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,14,27,268448,ENSMUSG00000037791,conserved gene but different region,11,77984047,77984178,132,*,132,11,0.636363636,0.840277778,0.083333333,0.000000075,CpGisland,TRUE,U1,Pr-A
10110,cg26405720,-0.00000623,0.00000254,-2.450993012,0.014798271,loss,ns,0.00000472,0.00000432,1.09198659,0.275686925,pos,ns,0.000964274,0.001265742,0.761824981,0.446743661,pos,ns,0.349941601,-0.0000643,0.0000435,-1.478133193,0.14038742,neg,ns,0.929073095,Gls,Gls_Exon,1,52188701,52188750,52188701,52188702,50,+,CGAGGATCAAGTTTTTTTGCAAAGTGTCTCAAATTATCATAGTTATGGAA,"Exon (Gls-204/Gls, exon 14 of 18)",1,52163448,52233223,69776,2,Gls-204,44473,Gls-204;Gls-203;Gls-217;Gls-209;Gls-202;Gls-201;Gls-216;Gls-207;Gls-205;Gls-210,Gls;Gls;Gls;Gls;Gls;Gls;Gls;Gls;Gls;Gls,0;0;0;0;0;0;0;0;8624;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,6,14660,ENSMUSG00000026103,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11151,cg16891210,-0.000076,0.0000118,-6.440850195,4.53E-10,loss,yes,0.0000219,0.00002,1.091952811,0.27570175,pos,ns,-0.001455101,0.005873102,-0.247756832,0.804486579,neg,ns,0.094481197,-0.000253885,0.000201975,-1.257007967,0.209697,neg,ns,0.573809455,Gabrg3,Gabrg3_Exon,7,56773252,56773301,56773252,56773253,50,-,CGATTTCTGTGGTGTTTCTGAGGCCCATGAAGTCAAACTGATAAAGCCGC,"Exon (Gabrg3-202/Gabrg3, exon 6 of 10)",7,56716465,57387188,670724,2,Gabrg3-202,613887,Gabrg3-202,Gabrg3,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,14407,ENSMUSG00000055026,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17716,cg25697838,-0.00000145,0.00000229,-0.634183556,0.526428727,loss,ns,-0.00000424,0.00000388,-1.09179552,0.275770786,neg,ns,-0.000540735,0.001137514,-0.475365628,0.634861158,neg,ns,0.197321243,-0.00001,0.0000391,-0.256570802,0.797680307,neg,ns,0.953727036,1110051M20Rik,1110051M20Rik_Promoter,2,91446975,91447024,91446975,91446976,50,-,CGCCCGACTGTTAATGACTCAAAGAAGGCTAAATAAGAACAAGATGTCAT,Promoter (2-3kb),2,91418833,91444704,25872,2,1110051M20Rik-207,-2320,1110051M20Rik-201;1110051M20Rik-203;1110051M20Rik-202;1110051M20Rik-208;1110051M20Rik-206;1110051M20Rik-205;1110051M20Rik-207,1110051M20Rik;1110051M20Rik;1110051M20Rik;1110051M20Rik;1110051M20Rik;1110051M20Rik;1110051M20Rik,0;0;0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,4,228356,ENSMUSG00000040591,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18796,cg20028019,-0.00000454,0.00000284,-1.598542941,0.110940905,loss,ns,-0.00000527,0.00000483,-1.091734196,0.275797704,neg,ns,-0.00258102,0.001413852,-1.82552339,0.068884088,neg,ns,1.161881088,-0.0000331,0.0000486,-0.68104832,0.496349317,neg,ns,0.859632743,Arhgap23,Arhgap23_Exon,11,97451908,97451957,97451956,97451957,50,+,TCCCAGGATGCTTTGAGCCAGCTGGGCCAGGAGGGCTGGCACCGAGCTCG,"Exon (Arhgap23-203/Arhgap23, exon 7 of 24)",11,97415533,97502402,86870,1,Arhgap23-203,36375,Arhgap23-203;Arhgap23-202;Arhgap23-204,Arhgap23;Arhgap23;Arhgap23,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,8,58996,ENSMUSG00000049807,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12785,cg02691990,-0.0000193,0.00000861,-2.240014268,0.025798434,loss,ns,-0.000016,0.0000146,-1.09161809,0.275848675,neg,ns,-0.008790546,0.004286522,-2.050740941,0.041132625,neg,ns,1.385813573,0.000192046,0.000147413,1.302773044,0.193619173,pos,ns,0.136332501,Jmjd1c,Jmjd1c_fiveUTR,10,67185898,67185947,67185946,67185947,50,-,ACCCAGATCGGAGGATGCAGTAGTGCTTCAGCTGCAGGATTTCTTAGTCG,5' UTR,10,67096125,67191748,95624,1,Jmjd1c-209,89773,Jmjd1c-209;Jmjd1c-210;Jmjd1c-211;Jmjd1c-201;Jmjd1c-212;Jmjd1c-205;Jmjd1c-206;Jmjd1c-208,Jmjd1c;Jmjd1c;Jmjd1c;Jmjd1c;Jmjd1c;Jmjd1c;Jmjd1c;Jmjd1c,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,9,108829,ENSMUSG00000037876,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
9620,cg03751003,0.0000821,0.0000174,4.728979274,0.00000343,gain,ns,-0.0000322,0.0000295,-1.091551387,0.275877961,neg,ns,0.02232859,0.008639478,2.58448368,0.010209455,pos,ns,1.990997431,-0.000567712,0.000297111,-1.910773473,0.056955953,neg,ns,0.428921878,Epc2,Epc2_Exon,2,49548674,49548723,49548674,49548675,50,+,CGCCAACAGCCTTAAAACTTGCCACAGTTGCTGCCAGTATGGACAGAGTG,"Exon (Epc2-201/Epc2, exon 13 of 14)",2,49451486,49551948,100463,1,Epc2-201,97188,Epc2-201,Epc2,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,14,227867,ENSMUSG00000069495,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10383,cg26754882,0.00000808,0.00000411,1.964058874,0.050416528,gain,ns,-0.00000763,0.00000699,-1.091404135,0.275942619,neg,ns,0.006268048,0.002047347,3.061547029,0.002394748,pos,ns,2.62074023,0.000000522,0.0000704,0.007408375,0.994093791,pos,ns,0.946848212,Snx24,Snx24_Intron,18,53302059,53302108,53302059,53302060,50,+,CGTCAACTAGTTTTGCTCTGATCAATAAGCAGTTTTCTGTGGCCTTTCAC,"Intron (Snx24-202/Snx24, intron 1 of 6)",18,53245662,53390920,145259,1,Snx24-202,56397,Snx24-202;Snx24-204;Snx24-203;Snx24-201,Snx24;Snx24;Snx24;Snx24,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,7,69226,ENSMUSG00000024535,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7174,cg27202712,0.0000101,0.00000381,2.655899939,0.008318774,gain,ns,0.00000707,0.00000648,1.091282907,0.275995857,pos,ns,-0.002317204,0.001898246,-1.22070751,0.223124462,neg,ns,0.651452814,0.000120155,0.0000653,1.840599545,0.066635885,pos,ns,0.916849956,Lcor,Lcor_Exon,19,41558996,41559045,41558996,41558997,50,-,CGGAAGAAAAGAGGGCGTTACAGACAGTACAACAGTGAGATACTGGAGGA,"Exon (Lcor-201/Lcor, exon 8 of 8)",19,41482637,41562261,79625,1,Lcor-201,76359,Lcor-201;Lcor-204;Lcor-206;Lcor-202;Lcor-205,Lcor;Lcor;Lcor;Lcor;Lcor,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,25,212391,ENSMUSG00000025019,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1546,cg02365170,-0.0000143,0.0000102,-1.402137938,0.161874596,loss,ns,0.000019,0.0000174,1.091213219,0.276026465,pos,ns,0.006006751,0.005090956,1.17988668,0.238949915,pos,ns,0.62169312,-0.000208362,0.000175078,-1.190114441,0.234912025,neg,ns,0.760244268,Gm11825,Gm11825_Intergenic_upstream,4,13593354,13593403,13593354,13593355,50,-,CGGATGATTTTAAGTAATTGCTCTGACAGAGACTGATTACTACAGTAACA,Distal Intergenic,4,13606034,13606769,736,1,Gm11825-201,-12680,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,4,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16026,cg23100276,-6.16E-08,0.00000102,-0.060427763,0.951853885,loss,ns,0.00000189,0.00000173,1.09105758,0.276094831,pos,ns,0.001106752,0.000507721,2.179844279,0.030021139,pos,ns,1.522572833,-0.0000334,0.0000175,-1.91446941,0.056480545,neg,ns,0.971764089,Zfp407,Zfp407_Intron,18,84256677,84256726,84256725,84256726,50,+,GGTAGAGGAACTATGCATTTCATACTGAATAATTATTTCTGTACTGCCCG,"Intron (Zfp407-201/Zfp407, intron 2 of 2)",18,84128027,84558425,430399,2,Zfp407-201,301699,Zfp407-201;Zfp407-202,Zfp407;Zfp407,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,32,240476,ENSMUSG00000048410,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12517,cg25767194,0.00000762,0.000005,1.525704825,0.128102954,gain,ns,-0.00000926,0.00000849,-1.091037426,0.276103684,neg,ns,0.003795746,0.002486176,1.526740515,0.127845161,pos,ns,0.893315707,-0.000179143,0.0000855,-2.095259949,0.036958963,neg,ns,0.818604515,Gm13578,Gm13578_Intergenic_downstream,2,64824149,64824198,64824197,64824198,50,-,AATTCAACTCCTGCTGTTAAATTAACCAGCGTTCCAGCCGAGTTAACGCG,Distal Intergenic,2,64867999,64868588,590,2,Gm13578-201,44439,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,10,667291,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7791,cg18538769,0.0000237,0.0000138,1.717509352,0.086884814,gain,ns,-0.0000256,0.0000235,-1.090866648,0.276178716,neg,ns,-0.010449495,0.0068824,-1.518292356,0.129959862,neg,ns,0.886190759,0.000295633,0.000236685,1.249056126,0.212586888,pos,ns,0.880618495,C2cd2l,C2cd2l_Exon,9,44317005,44317054,44317053,44317054,50,-,TTGGTGGCAGTGTCAGAGTGACGTGGTAGGTCTCCATGGAGACGGCAGCG,"Exon (C2cd2l-201/C2cd2l, exon 3 of 14)",9,44309237,44320285,11049,2,C2cd2l-201,3231,C2cd2l-201;C2cd2l-208;C2cd2l-202;C2cd2l-204;C2cd2l-203;C2cd2l-206;C2cd2l-209;C2cd2l-207;C2cd2l-205,C2cd2l;C2cd2l;C2cd2l;C2cd2l;C2cd2l;C2cd2l;C2cd2l;C2cd2l;C2cd2l,0;0;-2056;-2550;-3166;0;-1718;-851;-132,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,71764,ENSMUSG00000032120,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19481,cg25401456,-0.0000113,0.0000101,-1.121062308,0.263129019,loss,ns,-0.0000186,0.0000171,-1.090842125,0.276189491,neg,ns,-0.024625448,0.005002573,-4.922556536,0.00000139,neg,ns,5.856832334,0.000415022,0.000172038,2.412386381,0.016428894,pos,ns,0.520361666,Pja1,Pja1_Intergenic_downstream,X,99397501,99397550,99397501,99397502,50,+,CGTTCCTGGAGGCTTTTCCACTTAACAGGGCCTTGAAATCCATTTGCTGC,Distal Intergenic,20,99466146,99470672,4527,2,Pja1-204,73122,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,17,18744,ENSMUSG00000034403,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7423,cg09244212,0.0000317,0.00000289,10.94389203,8.70E-24,gain,yes,0.00000536,0.00000491,1.090829972,0.276194831,pos,ns,0.006023154,0.001439743,4.183491206,0.0000374,pos,ns,4.426924932,-0.0000508,0.0000495,-1.026198817,0.305597945,neg,ns,0.070953526,Ostm1,Ostm1_Intron,10,42591941,42591990,42591941,42591942,50,-,CGGGGCGCCCCATTGACTGGGCCCCGAGCCCCACTTTTCACAAACTCCAA,"Intron (Ostm1-202/Ostm1, intron 2 of 5)",10,42583835,42698323,114489,1,Ostm1-202,8106,Ostm1-202;Ostm1-203,Ostm1;Ostm1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,21,22,14628,ENSMUSG00000038280,mapped to different genes,10,42591770,42591966,197,*,197,30,0.730964467,1.140926641,0.152284264,2.64E-29,CpGisland,TRUE,U3,Pr-B
25860,cg02074198,-0.00000584,0.00000738,-0.791161078,0.429454888,loss,ns,0.0000137,0.0000125,1.090820696,0.276198907,pos,ns,-0.00139397,0.003674206,-0.379393463,0.704655455,neg,ns,0.152023181,-0.0000318,0.000126356,-0.251422973,0.801653692,neg,ns,0.810411845,Morc4,Morc4_threeUTR,X,139822751,139822800,139822751,139822752,50,+,CGAAGCTCCAAGTGAGGGAGGACAGAAGTAAGGAGATAGCTGACGTGGAT,3' UTR,20,139821632,139871654,50023,2,Morc4-201,48854,Morc4-201;Morc4-204;Morc4-202;Morc4-210,Morc4;Morc4;Morc4;Morc4,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,7,75746,ENSMUSG00000031434,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22398,cg21191249,0.00000747,0.00000349,2.138328004,0.033271636,gain,ns,-0.00000647,0.00000594,-1.090812836,0.276202361,neg,ns,-0.002129155,0.001738778,-1.224512465,0.221688679,neg,ns,0.654256484,0.0000671,0.0000598,1.121700095,0.262858077,pos,ns,0.920506784,Sdk2,Sdk2_Intergenic_upstream,11,114202944,114202993,114202944,114202945,50,-,CGGATTAGCCTGTAATACTTAGGCGGCTTTTTGTAATAAAACCCTGAGCC,Distal Intergenic,11,113865600,114067046,201447,2,Sdk2-205,-135947,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,11,237979,ENSMUSG00000041592,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10912,cg08639418,-0.00000494,0.00000461,-1.072076243,0.284519677,loss,ns,-0.00000854,0.00000783,-1.090630921,0.276282305,neg,ns,0.002359896,0.002295294,1.028145552,0.304682906,pos,ns,0.51615191,-0.0000409,0.0000789,-0.517885954,0.604907229,neg,ns,0.899827279,Itprid1,Itprid1_Intron,6,55879643,55879692,55879643,55879644,50,+,CGATATTCCAAAGAACCAAATGTCTTCCATGAATCAGTCAGAAATGCTTA,"Intron (Itprid1-201/Itprid1, intron 4 of 13)",6,55836895,55978622,141728,1,Itprid1-201,42748,Itprid1-201,Itprid1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,2,232016,ENSMUSG00000037973,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7317,cg26672682,-0.00000361,0.00000159,-2.266053128,0.024137368,loss,ns,0.00000295,0.0000027,1.090355417,0.276403408,pos,ns,0.000179163,0.000792234,0.226149523,0.821234163,pos,ns,0.085532992,-0.00000383,0.0000272,-0.140716169,0.888185561,neg,ns,0.047429901,Rbm27,Rbm27_Exon,18,42275555,42275604,42275603,42275604,50,+,GCCCTCAAGTCCTGGCTGGCCAAGTTACTGGAGCCGATGTGAGTGAGCCG,Promoter (<=1kb),18,42275353,42341542,66190,1,Rbm27-201,202,Rbm27-201;Rbm27-202;Rbm27-203,Rbm27;Rbm27;Rbm27,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,10,225432,ENSMUSG00000024491,conserved gene but different region,18,42275589,42276090,502,*,502,48,0.683266932,0.900448431,0.09561753,1.03E-35,CpGisland,TRUE,U1,Pr-A
8686,cg14811014,0.00000646,0.00000581,1.110421379,0.267678049,gain,ns,0.0000108,0.00000988,1.089975932,0.276570277,pos,ns,-0.00634659,0.002893899,-2.193093309,0.029043268,neg,ns,1.536954518,0.000158268,0.0000995,1.590300148,0.112786415,pos,ns,0.786033498,Poll,Poll_Intergenic_downstream,19,45549179,45549228,45549179,45549180,50,-,CGATTCCGGCGGAGGAGGCTAAAAAGATGAATTTCAGCAATAAAATTAAA,Distal Intergenic,19,45552275,45560531,8257,2,Poll-201,11352,Poll-201,Poll,11303,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,16,56626,ENSMUSG00000025218,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24635,cg12185486,0.00000628,0.00000276,2.274659245,0.023609244,gain,ns,-0.00000511,0.00000469,-1.089851265,0.276625111,neg,ns,-0.000582491,0.001374121,-0.423900663,0.671932248,neg,ns,0.172674516,0.0000108,0.0000473,0.22946588,0.81865816,pos,ns,0.950332208,Pard3,Pard3_threeUTR,8,127359752,127359801,127359800,127359801,50,+,CCCAACGATGGAGGGCCTCTGGGAATCCACGTAGTGCCTTTCAGTGCTCG,3' UTR,8,127063893,127611970,548078,1,Pard3-219,295859,Pard3-219;Pard3-202;Pard3-209;Pard3-226;Pard3-211;Pard3-222;Pard3-207;Pard3-201;Pard3-224;Pard3-210;Pard3-216;Pard3-223;Pard3-221;Pard3-213;Pard3-206;Pard3-214;Pard3-212;Pard3-220;Pard3-203;Pard3-217;Pard3-218,Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,8,93742,ENSMUSG00000025812,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14246,cg19860820,0.000202234,0.0000338,5.983369516,6.03E-09,gain,yes,0.0000626,0.0000574,1.089735912,0.276675855,pos,ns,0.100848191,0.016822245,5.994930582,5.66E-09,pos,ns,8.247553321,-0.000413211,0.000578516,-0.714260524,0.47560356,neg,ns,0.510793029,Onecut1,Onecut1_Intergenic_downstream,9,74893689,74893738,74893689,74893690,50,-,CGAGTGCCTTGCTTGAACCAAAGTGTTAAACCGCTGTTGACCTCTTTCAC,Downstream (1-2kb),9,74866484,74890360,23877,1,Onecut1-202,27254,Onecut1-201;Onecut1-202,Onecut1;Onecut1,0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,4,28,15379,ENSMUSG00000043013,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10026,cg21250241,-0.0000256,0.00000777,-3.294790956,0.001099072,loss,ns,0.0000144,0.0000132,1.089559063,0.276753664,pos,ns,0.009809266,0.003865285,2.537786015,0.011645119,pos,ns,1.933856074,-0.00047,0.000132927,-3.53578027,0.000468625,neg,ns,0.780771629,Gm19197,Gm19197_Intron,17,51961609,51961658,51961657,51961658,50,+,TTATCCCACATACAGCATTTATCTTTAAAAGAGCAAGACTAATGAACCCG,"Intron (Gm20098-201/Gm20098-201, intron 2 of 2)",17,52008967,52009569,603,1,Gm19197-201,-47309,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,11,100418416,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13730,cg10606401,-0.0000431,0.00000509,-8.450143809,1.15E-15,loss,yes,-0.00000943,0.00000866,-1.089447815,0.276802618,neg,ns,-0.001265281,0.002535669,-0.498992925,0.618138274,neg,ns,0.208914365,-0.0000575,0.0000872,-0.659170626,0.510275548,neg,ns,0.847807526,Map3k20,Map3k20_Exon,2,72298315,72298364,72298315,72298316,50,+,CGAGCCAAATGGATATCACAGGACAAGGAGGTGGCTGTAAAGAAGCTCCT,"Exon (Map3k20-201/Map3k20, exon 2 of 20)",2,72285637,72442610,156974,1,Map3k20-201,12678,Map3k20-201;Map3k20-204;Map3k20-202;Map3k20-206;Map3k20-203;Map3k20-205,Map3k20;Map3k20;Map3k20;Map3k20;Map3k20;Map3k20,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,18,65964,ENSMUSG00000004085,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23415,cg27007358,-0.000000625,0.00000249,-0.250704218,0.802208881,loss,ns,0.00000462,0.00000424,1.089443245,0.276804629,pos,ns,0.001622588,0.001241531,1.306925741,0.192206568,pos,ns,0.716231776,0.00000945,0.0000427,0.221373243,0.824947571,pos,ns,0.049421357,Sp4,Sp4_fiveUTR,12,118301329,118301378,118301377,118301378,50,+,CGGTGGCTCGGAGGAGGCTGTAGCTGGCACAGGCTCTGCCTCTTTTTCCG,Promoter (<=1kb),12,118234933,118301370,66438,2,Sp4-201,0,Sp4-201;Sp4-203;Sp4-202,Sp4;Sp4;Sp4,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,14,20688,ENSMUSG00000025323,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
20072,cg06367756,0.00000133,0.00000361,0.368360016,0.712856222,gain,ns,0.00000668,0.00000613,1.0893643,0.276839372,pos,ns,0.000902665,0.001795491,0.502739785,0.615504197,pos,ns,0.210768981,-0.0000456,0.0000617,-0.738305245,0.460887536,neg,ns,0.925746093,Hdac8,Hdac8_Intron,X,102418945,102418994,102418993,102418994,50,-,TGCAAATTCAAAACTCCATGTCCTGGAAATCCCAAACCAATCAAGTGGCG,"Intron (Hdac8-201/Hdac8, intron 7 of 10)",20,102284639,102505359,220721,2,Hdac8-201,86365,Hdac8-201;Hdac8-205;Hdac8-203;Hdac8-202,Hdac8;Hdac8;Hdac8;Hdac8,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,7,70315,ENSMUSG00000067567,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7742,cg00909385,-0.0000293,0.0000106,-2.778346011,0.005796817,loss,ns,-0.0000195,0.0000179,-1.089357346,0.276842433,neg,ns,-0.009198978,0.005254981,-1.750525592,0.081016883,neg,ns,1.091424468,0.000177209,0.000180718,0.980583252,0.327562939,pos,ns,0.773896443,Clta,Clta_Exon,4,44032474,44032523,44032522,44032523,50,+,CTGTGTGACTTTAACCCCAAGTCTAGCAAGCAGGCCAAAGATGTCTCCCG,"Exon (Clta-202/Clta, exon 6 of 6)",4,44004452,44032846,28395,1,Clta-202,28022,Clta-202;Clta-203;Clta-206;Clta-204;Clta-205;Clta-201;Gne-201;Gne-214;Gne-202;Gne-208;Gne-209,Clta;Clta;Clta;Clta;Clta;Clta;Gne;Gne;Gne;Gne;Gne,0;0;0;0;0;0;51654;22774;40255;34397;34437,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,6,12757,ENSMUSG00000028478,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
45,cg08037763,0.00000302,0.00000193,1.562741549,0.119133637,gain,ns,-0.00000358,0.00000328,-1.089230837,0.276898114,neg,ns,-0.001451927,0.000961754,-1.509665742,0.132147286,neg,ns,0.878941751,0.0000481,0.0000331,1.452886639,0.147266696,pos,ns,0.945022052,Dtnb,Dtnb_Exon,12,3617613,3617662,3617613,3617614,50,-,CGAGGCAAGTTGACGGTATTTTCAGTTAAAGCTATGTTAGCAACCATGTG,"Exon (Dtnb-210/Dtnb, exon 5 of 20)",12,3572381,3781796,209416,1,Dtnb-210,45232,Dtnb-210;Dtnb-203;Dtnb-212;Dtnb-204;Dtnb-222;Dtnb-205;Dtnb-211;Dtnb-224;Dtnb-219;Dtnb-214;Dtnb-225;Dtnb-216;Dtnb-202;Dtnb-218;Dtnb-201;Dtnb-223,Dtnb;Dtnb;Dtnb;Dtnb;Dtnb;Dtnb;Dtnb;Dtnb;Dtnb;Dtnb;Dtnb;Dtnb;Dtnb;Dtnb;Dtnb;Dtnb,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,13528,ENSMUSG00000071454,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16525,cg05558450,-0.000000408,0.00000131,-0.312104466,0.755170951,loss,ns,0.00000242,0.00000222,1.089156137,0.276930997,pos,ns,0.0003594,0.000650016,0.55290985,0.580723623,pos,ns,0.236030507,-0.00000309,0.0000224,-0.138131483,0.890226185,neg,ns,0.964754897,Camkmt,Camkmt_Intron,17,85381921,85381970,85381921,85381922,50,-,CGAATAGCCCTATATCCTTACAGATGCTGTGGATGGATGCATCTAAGCTG,"Intron (Camkmt-201/Camkmt, intron 3 of 10)",17,85090552,85458588,368037,1,Camkmt-201,291369,Camkmt-201,Camkmt,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,41,44,73582,ENSMUSG00000071037,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22780,cg25382102,0.0000235,0.00000872,2.696335543,0.007393781,gain,ns,0.0000161,0.0000148,1.089132533,0.276941387,pos,ns,0.0000495,0.004340753,0.01139493,0.990915688,pos,ns,0.003963296,0.000123762,0.000149278,0.829070915,0.407702185,pos,ns,0.183916601,Dmbx1,Dmbx1_Promoter,4,115944224,115944273,115944224,115944225,50,+,CGGCCCCGGCCGCGCTGACAAGACTAACAAAGCAATTTGCCACGAGCCAT,Promoter (4-5kb),4,115915120,115939926,24807,2,Dmbx1-202,-4298,Dmbx1-203;Dmbx1-202,Dmbx1;Dmbx1,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,9,42,140477,ENSMUSG00000028707,conserved gene but different region,4,115943986,115944303,318,*,318,35,0.694968554,0.925340871,0.110062893,1.76E-28,CpGisland,TRUE,U13,Hc-P
11685,cg05782876,-0.00000396,0.000000764,-5.185650835,0.000000389,loss,yes,0.00000141,0.0000013,1.089023181,0.27698953,pos,ns,-0.000836375,0.00038005,-2.200695684,0.028494694,neg,ns,1.545236006,0.0000278,0.0000131,2.130345003,0.033930201,pos,ns,0.984040438,Myo9a,Myo9a_Exon,9,59912541,59912590,59912589,59912590,50,-,CTGTACTAATTGCAGTTAGATTCATGAACATTACCCGCAATTCAGTCTCG,"Exon (Myo9a-206/Myo9a, exon 41 of 44)",9,59750896,59928866,177971,1,Myo9a-203,161645,Myo9a-203;Myo9a-205;Myo9a-206;Myo9a-204;Myo9a-202;Myo9a-201,Myo9a;Myo9a;Myo9a;Myo9a;Myo9a;Myo9a,0;0;0;0;0;2643,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,8,270163,ENSMUSG00000039585,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24405,cg25019875,0.0000123,0.00000933,1.314482778,0.189655484,gain,ns,0.0000173,0.0000159,1.088940383,0.277025984,pos,ns,-0.006535564,0.004644731,-1.407092016,0.160401897,neg,ns,0.794790499,0.000186276,0.000159732,1.166180324,0.244437943,pos,ns,0.290978659,Zc3h12a,Zc3h12a_Intergenic_upstream,4,125283000,125283049,125283048,125283049,50,+,ACAAAAAGAGTGAATAACTCGGTAATTTGATTTCCCCTGATTCCCCTGCG,Distal Intergenic,4,125118423,125127840,9418,2,Zc3h12a-201,-155160,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,5,230738,ENSMUSG00000042677,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6653,cg26857113,-0.00000641,0.00000867,-0.738554255,0.460736485,loss,ns,0.000016,0.0000147,1.088651246,0.277153315,pos,ns,0.004300249,0.004316543,0.9962253,0.319917662,pos,ns,0.494961783,-0.000188507,0.000148446,-1.269872072,0.205082577,neg,ns,0.670930675,Uri1,Uri1_Intergenic_downstream,7,37922065,37922114,37922065,37922066,50,+,CGAGTAGTCATAATATTTAGTACATATCATAGAGTGTTTCAGGTACAATA,Distal Intergenic,7,37961301,37962528,1228,2,Uri1-203,40414,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,19,27,19777,ENSMUSG00000030421,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15117,cg25561010,-0.00000552,0.00000189,-2.922515866,0.00372751,loss,ns,0.00000349,0.00000321,1.088519538,0.27721133,pos,ns,0.004480904,0.000939748,4.76819467,0.00000286,pos,ns,5.542997206,-0.000107782,0.0000323,-3.33505569,0.000956388,neg,ns,0.948537472,Wsb1,Wsb1_threeUTR,11,79243407,79243456,79243407,79243408,50,-,CGTACAGTACACCTTGCAGCCGAATGCAAGGTTACTTCATCCTATGGTAA,3' UTR,11,79239372,79254671,15300,2,Wsb1-201,11215,Wsb1-201;Wsb1-206;Wsb1-202;Wsb1-207;Wsb1-205;Wsb1-203;Wsb1-204,Wsb1;Wsb1;Wsb1;Wsb1;Wsb1;Wsb1;Wsb1,0;-383;0;-458;0;0;7568,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,7,7,78889,ENSMUSG00000017677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13497,cg03023496,-0.00000469,0.00000138,-3.412539945,0.000729063,loss,ns,0.00000254,0.00000234,1.088497017,0.277221251,pos,ns,-0.000792073,0.000684559,-1.157056626,0.248140014,neg,ns,0.605303198,0.000038,0.0000235,1.613158594,0.107727528,pos,ns,0.960616199,Gm34783,Gm34783_Intergenic_downstream,7,70860050,70860099,70860050,70860051,50,-,CGAAGGCTTCGTTTAAAGTGATATGTCCATTAAAATAACCTGTGCTGCCA,Distal Intergenic,7,70912518,70912820,303,2,Gm34783-201,52770,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,5,102638149,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16340,cg08285141,0.0000397,0.00000439,9.051846154,1.60E-17,gain,yes,-0.00000811,0.00000745,-1.08834582,0.277287863,neg,ns,0.006934604,0.002183525,3.175875094,0.001644169,pos,ns,2.784053419,-0.000143038,0.0000751,-1.904852421,0.057724549,neg,ns,0.098266583,Rfx4,Rfx4_fiveUTR,10,84756139,84756188,84756187,84756188,50,+,TTTTTCCCATGAAACATCCGCAAACATTTTGACGGGTTTGGCTTTGCCCG,Promoter (<=1kb),10,84756062,84906144,150083,1,Rfx4-202,77,Rfx4-202,Rfx4,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,7,13,71137,ENSMUSG00000020037,conserved gene and region,10,84756044,84756276,233,*,233,17,0.557939914,1.02510352,0.072961373,5.60E-11,CpGisland,TRUE,U13,Hc-P
4704,cg24963751,0.0000126,0.00000428,2.937133681,0.003560806,gain,ns,-0.00000791,0.00000727,-1.088037735,0.277423627,neg,ns,-0.001334356,0.002128976,-0.626759299,0.531278311,neg,ns,0.274677913,-0.000157235,0.0000732,-2.147574308,0.032522618,neg,ns,0.906517157,Cacna1d,Cacna1d_Exon,14,30171960,30172009,30172008,30172009,50,+,TCAATACACCAAGTACAAGATTTAGTACGAAAAATGACCCAAAGATGACG,"Exon (Cacna1d-208/Cacna1d, exon 8 of 48)",14,30039941,30491453,451513,2,Cacna1d-202,319444,Cacna1d-202;Cacna1d-201;Cacna1d-208;Cacna1d-209;Cacna1d-214;Cacna1d-204;Cacna1d-207;Cacna1d-218;Cacna1d-216;Cacna1d-206,Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,26,12289,ENSMUSG00000015968,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17528,cg14569995,-0.00000322,0.00000542,-0.594652423,0.552509593,loss,ns,0.00001,0.00000921,1.08779146,0.277532186,pos,ns,-0.006196973,0.002697681,-2.29714777,0.022276507,neg,ns,1.652152905,0.0000334,0.0000928,0.359915547,0.719155363,pos,ns,0.869184598,Nrxn1,Nrxn1_Exon,17,90704057,90704106,90704057,90704058,50,+,CGCTGTTACCTGACGCAGATTCCTGGTGACTTTCACATCATGCCAGGCAT,"Exon (Nrxn1-202/Nrxn1, exon 5 of 21)",17,90033631,91088907,1055277,2,Nrxn1-202,384801,Nrxn1-202;Nrxn1-207;Nrxn1-216;Nrxn1-209;Nrxn1-201;Nrxn1-206;Nrxn1-208;Nrxn1-210;Nrxn1-224;Nrxn1-205;Nrxn1-203,Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,22,27,18189,ENSMUSG00000024109,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22842,cg05692692,-0.0000132,0.00000298,-4.417496279,0.0000138,loss,ns,0.00000551,0.00000507,1.087710036,0.277568084,pos,ns,0.003520887,0.001484816,2.371261388,0.018338433,pos,ns,1.736637778,-0.0000804,0.0000511,-1.573821504,0.116548715,neg,ns,0.945431051,Meis2,Meis2_Intron,2,116018971,116019020,116018971,116018972,50,+,CGCAGATTTTCAGAAGTTAATGAGACATTTCCAGGAATGGTAAATACATG,"Intron (Meis2-201/Meis2, intron 7 of 11)",2,115863064,116065047,201984,2,Meis2-201,46027,Meis2-201;Meis2-203;Meis2-205;Meis2-206;Meis2-204;Meis2-202;Meis2-216;Meis2-217;Meis2-213,Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,45,97,17536,ENSMUSG00000027210,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11684,cg14630728,-0.00000695,0.00000176,-3.937604915,0.000101684,loss,ns,-0.00000326,0.000003,-1.087705021,0.277570295,neg,ns,-0.001665211,0.000877964,-1.896673423,0.058800474,neg,ns,1.23061917,0.0000527,0.0000302,1.745473552,0.081893243,pos,ns,0.96083736,Myo9a,Myo9a_Exon,9,59912528,59912577,59912576,59912577,50,+,CTAATCCAGAAACCTGTACTAATTGCAGTTAGATTCATGAACATTACCCG,"Exon (Myo9a-206/Myo9a, exon 41 of 44)",9,59750896,59928866,177971,1,Myo9a-203,161632,Myo9a-203;Myo9a-205;Myo9a-206;Myo9a-204;Myo9a-202;Myo9a-201,Myo9a;Myo9a;Myo9a;Myo9a;Myo9a;Myo9a,0;0;0;0;0;2630,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,8,270163,ENSMUSG00000039585,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12659,cg12153643,-0.00000252,0.00000289,-0.871470459,0.384171732,loss,ns,0.00000534,0.00000491,1.087644476,0.277596991,pos,ns,0.004206318,0.001437245,2.926653194,0.003679618,pos,ns,2.434197243,-0.0001303,0.0000494,-2.636222802,0.008805485,neg,ns,0.948693244,Herc1,Herc1_Exon,9,66448402,66448451,66448450,66448451,50,+,GATGCTGGTCTTAGAGTTGGAGGTCGGTGTGTTCACAAGCAAACTGGGCG,"Exon (Herc1-201/Herc1, exon 37 of 78)",9,66350526,66508775,158250,1,Herc1-201,97876,Herc1-201;Herc1-206;Herc1-204,Herc1;Herc1;Herc1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,15,15,235439,ENSMUSG00000038664,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20342,cg08920256,0.00000627,0.00000203,3.080611056,0.002250915,gain,ns,-0.00000376,0.00000346,-1.087623728,0.277606139,neg,ns,-0.002856544,0.001012324,-2.82176933,0.005084322,neg,ns,2.293766982,0.0000796,0.0000348,2.285041897,0.022985534,pos,ns,0.042708238,Hoxc5,Hoxc5_Exon,15,103009677,103009726,103009677,103009678,50,-,CGCCCTCAATTCCACCGCCTATGATCCAGTGAGGCATTTCTCGACCTATG,"Exon (Hoxc6-202/Hoxc6, exon 2 of 3)",15,102967443,103015676,48234,1,Hoxc5-202,42234,Hoxc5-202;Hoxc5-201;Hoxc6-202;Hoxc6-203;Hoxc6-201,Hoxc5;Hoxc5;Hoxc6;Hoxc6;Hoxc6,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,72,134,15424,ENSMUSG00000022485,mapped to different genes,15,103009647,103009812,166,*,166,14,0.602409639,0.948184415,0.084337349,5.77E-10,CpGisland,TRUE,U13,Hc-P
1054,cg23122881,-0.0000106,0.00000252,-4.224474687,0.0000315,loss,ns,0.00000465,0.00000427,1.087590155,0.277620943,pos,ns,-0.001389534,0.001252006,-1.109846648,0.267925285,neg,ns,0.571986299,0.0000472,0.0000431,1.097029736,0.273479814,pos,ns,0.972388304,Fbxo30,Fbxo30_Exon,10,11289755,11289804,11289755,11289756,50,+,CGAAATAAAGTTGCTGAACATCTAGAAATGTGTCCTGCAAGTGTGGTGTG,"Exon (Fbxo30-202/Fbxo30, exon 2 of 3)",10,11281330,11298052,16723,1,Fbxo30-202,8425,Fbxo30-202;Fbxo30-201,Fbxo30;Fbxo30,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,71865,ENSMUSG00000047648,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15468,cg12938952,0.0000146,0.00000612,2.385023619,0.017678732,gain,ns,-0.0000113,0.0000104,-1.087580993,0.277624983,neg,ns,-0.003937998,0.003047049,-1.292397236,0.197182121,neg,ns,0.705132467,0.000128122,0.000104788,1.222677992,0.222380077,pos,ns,0.100131986,Sall3,Sall3_Intron,18,80984755,80984804,80984755,80984756,50,+,CGGCAGAAATAAATCCATTCATTTGATCATGTAGTCATTGAGGGCGATAC,"Intron (Sall3-201/Sall3, intron 1 of 3)",18,80966376,80986771,20396,2,Sall3-201,1967,Sall3-201;Sall3-203,Sall3;Sall3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,10,20689,ENSMUSG00000024565,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
2824,cg25246733,0.0000388,0.00000682,5.685052584,3.02E-08,gain,yes,0.0000126,0.0000116,1.087560514,0.277634014,pos,ns,0.014157932,0.003395809,4.169237303,0.0000397,pos,ns,4.401179848,-0.000228246,0.000116782,-1.954470925,0.051544243,neg,ns,0.172708188,Comtd1,Comtd1_Intergenic_upstream,14,21903959,21904008,21903959,21903960,50,-,CGGACCCAGCTGAACTGGCAGAGCACTTCAAAGGCCTACGGGTCATTCAT,Distal Intergenic,14,21845855,21848977,3123,2,Comtd1-202,-55031,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,13,69156,ENSMUSG00000021773,mapped to different genes,14,21903863,21904078,216,*,216,12,0.532407407,0.786885246,0.055555556,0.00000131,CpGisland,TRUE,U9,En-Pp
23927,cg12784172,-0.000024,0.0000139,-1.722015952,0.086064102,loss,ns,-0.0000257,0.0000237,-1.087449797,0.27768284,neg,ns,-0.001229606,0.006935803,-0.177283848,0.859401215,neg,ns,0.065804037,-0.000069,0.000238522,-0.289143546,0.7726648,neg,ns,0.24836375,Zscan29,Zscan29_Exon,2,121169925,121169974,121169973,121169974,50,+,GTCAGGAACTGCTCTAGCACCAACAGTTCTACAATCTGCTCCTTGGTGCG,Promoter (<=1kb),2,121158273,121170268,11996,2,Zscan29-202,294,Tubgcp4-212;Tubgcp4-203;Tubgcp4-208;Tubgcp4-215;Tubgcp4-201;Tubgcp4-211;Tubgcp4-205;Tubgcp4-202;Tubgcp4-206;Tubgcp4-214;Tubgcp4-207;Zscan29-202;Zscan29-201;Zscan29-205;Zscan29-203,Tubgcp4;Tubgcp4;Tubgcp4;Tubgcp4;Tubgcp4;Tubgcp4;Tubgcp4;Tubgcp4;Tubgcp4;Tubgcp4;Tubgcp4;Zscan29;Zscan29;Zscan29;Zscan29,-680;0;0;0;0;0;-1272;-1294;-1319;-1608;-3677;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,99334,ENSMUSG00000050619,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24799,cg21951974,0.000000662,0.00000271,0.244140102,0.807283816,gain,ns,-0.00000501,0.0000046,-1.087196391,0.277794614,neg,ns,0.001937985,0.001348841,1.436777713,0.151789628,pos,ns,0.818757903,-0.0000897,0.0000464,-1.934388607,0.053975135,neg,ns,0.920295643,Smarcc2,Smarcc2_Exon,10,128488289,128488338,128488289,128488290,50,-,CGCAGCCCAAAGCCCTGCCATTGTGGCAGCTGTTCAGGGCAACCTCCTGC,"Exon (Smarcc2-203/Smarcc2, exon 27 of 28)",10,128459248,128490482,31235,1,Smarcc2-205,29041,Myl6-201;Myl6-213;Myl6-212;Myl6-202;Myl6-206;Myl6-209;Myl6-211;Myl6-205;Myl6-203;Myl6-214;Myl6-208;Myl6-215;Myl6-207;Myl6-210;Myl6-204;Smarcc2-205;Smarcc2-201;Smarcc2-202;Smarcc2-203,Myl6;Myl6;Myl6;Myl6;Myl6;Myl6;Myl6;Myl6;Myl6;Myl6;Myl6;Myl6;Myl6;Myl6;Myl6;Smarcc2;Smarcc2;Smarcc2;Smarcc2,0;0;0;0;0;0;0;0;0;0;0;5491;5455;5807;5236;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,16,68094,ENSMUSG00000025369,conserved gene and region,10,128488162,128488290,129,*,129,10,0.658914729,0.808270677,0.07751938,0.000000711,CpGisland,TRUE,U10,Tr-S
8972,cg10878680,0.000021,0.0000036,5.826200427,1.42E-08,gain,yes,-0.00000665,0.00000611,-1.087180627,0.277801569,neg,ns,0.00468864,0.001790835,2.618130612,0.009275391,pos,ns,2.032667758,-0.000144163,0.0000616,-2.340809642,0.01987561,neg,ns,0.064073999,4931429L15Rik,4931429L15Rik_Intergenic_upstream,9,46443501,46443550,46443501,46443502,50,+,CGGGGGACAGATGTGCATCAATATTTATTCGGAACTCCCAGGAAACCTGG,Distal Intergenic,9,46303361,46319986,16626,2,4931429L15Rik-201,-123515,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,12,22,74361,ENSMUSG00000056617,mapped to different genes,9,46443406,46443531,126,*,126,12,0.619047619,1,0.095238095,3.27E-09,CpGisland,TRUE,NA,NRS
24362,cg03460172,-0.0000262,0.0000127,-2.069212465,0.039354572,loss,ns,-0.0000234,0.0000215,-1.087160203,0.277810579,neg,ns,-0.000195592,0.006310125,-0.030996502,0.975292276,neg,ns,0.010865215,-0.000439846,0.000217005,-2.026896394,0.043528604,neg,ns,0.125514841,Ptms,Ptms_Promoter,6,124919698,124919747,124919698,124919699,50,-,CGCCTGCTGTCTCGGACACCCTGCTGGGCTCTTACCCTGTTGCCCTGGTA,Promoter (<=1kb),6,124913764,124920103,6340,2,Ptms-205,356,Ptms-201;Ptms-205;Ptms-203;Ptms-202,Ptms;Ptms;Ptms;Ptms,-1752;0;-4474;-4169,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,2,2,69202,ENSMUSG00000030122,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13678,cg06039237,-0.00000528,0.0000128,-0.412645849,0.680151342,loss,ns,0.0000236,0.0000217,1.087057069,0.277856081,pos,ns,0.00704483,0.00636621,1.10659723,0.269326075,pos,ns,0.569721598,-0.000192297,0.000218933,-0.878336547,0.380441364,neg,ns,0.770400388,Irx1,Irx1_Intergenic_upstream,13,72028153,72028202,72028153,72028154,50,-,CGACCACACCATGAAATCTCTTGTTAAAGAAAGAAAAATGGTGTTTGCTG,Distal Intergenic,13,71957921,71963723,5803,2,Irx1-201,-64479,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,8,16371,ENSMUSG00000060969,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1369,cg18080576,0.0000193,0.0000049,3.943267014,0.0000994,gain,ns,-0.00000905,0.00000833,-1.086906566,0.27792249,neg,ns,-0.003310262,0.002439604,-1.356885281,0.175804857,neg,ns,0.754969131,-0.000141131,0.0000839,-1.682176327,0.093541607,neg,ns,0.690726875,Pdzd2,Pdzd2_Exon,15,12445541,12445590,12445589,12445590,50,-,TCCTTCACTTGAGTGACAACGATAGCGTGAGGTGAGCGCTTTGATCCTCG,"Exon (Pdzd2-201/Pdzd2, exon 3 of 24)",15,12359711,12592556,232846,2,Pdzd2-201,146966,Pdzd2-201;Pdzd2-208;Pdzd2-206,Pdzd2;Pdzd2;Pdzd2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,5,68070,ENSMUSG00000022197,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25510,cg22763788,-0.0000115,0.00000246,-4.657597472,0.00000475,loss,ns,0.00000455,0.00000419,1.086832158,0.277955327,pos,ns,-0.001226478,0.001226437,-1.00003379,0.318074103,neg,ns,0.497471689,0.00000514,0.0000422,0.121970525,0.903001389,pos,ns,0.957717089,Mgmt,Mgmt_Intron,7,137040043,137040092,137040091,137040092,50,+,CTAAATGTTTCCAAATTACTGCAGGTAATTTTTACAGCTTAATTCCTCCG,"Intron (Mgmt-201/Mgmt, intron 2 of 4)",7,136894614,137130266,235653,1,Mgmt-201,145429,Mgmt-201,Mgmt,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,16,17314,ENSMUSG00000054612,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6326,cg00550040,-0.00000148,0.00000177,-0.835509923,0.404074144,loss,ns,0.00000328,0.00000301,1.086619135,0.27804935,pos,ns,0.002096573,0.000883043,2.374259226,0.018192913,pos,ns,1.740097754,-0.0000836,0.0000304,-2.75233048,0.006265862,neg,ns,0.95074452,Tshz3,Tshz3_Intergenic_downstream,7,36892883,36892932,36892931,36892932,50,+,TAACATATTATAATTGCAGTAAAGATGGTTTTGACAGAAATCATTTCCCG,Distal Intergenic,7,36698217,36702113,3897,1,Tshz3-202,194666,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,21,58,243931,ENSMUSG00000021217,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6755,cg12544297,0.00000476,0.00000157,3.036130844,0.002599662,gain,ns,-0.0000029,0.00000267,-1.086380158,0.278154854,neg,ns,-0.00038142,0.00078088,-0.488449441,0.625576864,neg,ns,0.203719321,0.0000347,0.0000269,1.293199325,0.196904983,pos,ns,0.05042215,Lhx2,Lhx2_Intron,2,38347975,38348024,38347975,38347976,50,+,CGAGTGAGATGACTAATTACACCTTGTCAATCACCGGCTATGAAGACATA,"Intron (Lhx2-203/Lhx2, intron 1 of 4)",2,38339281,38369199,29919,1,Lhx2-203,8694,Lhx2-203;Lhx2-204;Lhx2-202;Lhx2-201;Lhx2-207;Lhx2-205,Lhx2;Lhx2;Lhx2;Lhx2;Lhx2;Lhx2,0;0;0;0;-3744;-4508,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,33,16870,ENSMUSG00000000247,mapped to different genes,2,38347822,38348178,357,*,357,27,0.518207283,1.126841244,0.075630252,1.55E-17,CpGisland,TRUE,U3,Pr-B
6776,cg00490620,0.00000399,0.00000866,0.460317175,0.645611289,gain,ns,0.000016,0.0000147,1.086204017,0.278232634,pos,ns,0.001619776,0.004309225,0.375885661,0.707258996,pos,ns,0.15042152,0.000261916,0.000148194,1.767388297,0.078147005,pos,ns,0.822596582,Lhx2,Lhx2_Intergenic_downstream,2,38403275,38403324,38403323,38403324,50,-,AACAATTTATACATTTAGAATCCTAAGTTTTCAAAACTCAGCCCGCCGCG,Distal Intergenic,2,38353802,38360089,6288,1,Lhx2-206,49522,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,33,16870,ENSMUSG00000000247,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21664,cg08698311,-0.0000107,0.00000196,-5.479933429,8.82E-08,loss,yes,0.00000362,0.00000333,1.086128886,0.278265815,pos,ns,-0.000442498,0.000976113,-0.45332706,0.650630401,neg,ns,0.186665648,-0.0000223,0.0000336,-0.662884798,0.50789691,neg,ns,0.961275174,Zfhx3,Zfhx3_Exon,8,108793313,108793362,108793361,108793362,50,-,AACCTCATAGGCCCCGGACACAGTTTTTATGGTAAATTTAGTGGCATTCG,"Exon (Zfhx3-204/Zfhx3, exon 8 of 16)",8,107942644,108961630,1018987,1,Zfhx3-204,850669,Zfhx3-204;Zfhx3-202;Zfhx3-201,Zfhx3;Zfhx3;Zfhx3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,46,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16909,cg00218407,-0.00000323,0.00000205,-1.574818987,0.116318194,loss,ns,0.00000379,0.00000349,1.08592001,0.278358078,pos,ns,0.001521322,0.001021853,1.488787588,0.137559891,pos,ns,0.861508178,-0.000051,0.0000351,-1.45074553,0.147861823,neg,ns,0.945839774,Eif4e2,Eif4e2_threeUTR,1,87232406,87232455,87232454,87232455,50,+,CTGGGAGGAGTTTCATGGCCTGGTGAACAGCAGCGGCCGCTGATCGGACG,3' UTR,1,87213914,87234711,20798,1,Eif4e2-201,18492,Eif4e2-206;Eif4e2-201;Eif4e2-202;Eif4e2-207;Eif4e2-204,Eif4e2;Eif4e2;Eif4e2;Eif4e2;Eif4e2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,6,26987,ENSMUSG00000026254,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26642,cg01451179,0.00000147,0.00000152,0.961813161,0.33689308,gain,ns,0.00000281,0.00000259,1.085824911,0.278400091,pos,ns,0.002254214,0.000758455,2.972114988,0.00318918,pos,ns,2.496320979,-0.000068,0.0000261,-2.605579545,0.009614463,neg,ns,0.968136597,Pex14,Pex14_Intron,4,149061892,149061941,149061892,149061893,50,-,CGCTGTGGGAATCTACAGATTTAAACAAATAACACTCACAGCAGGGGGTG,"Intron (Pex14-201/Pex14, intron 2 of 8)",4,148960535,149099876,139342,2,Pex14-201,37935,Pex14-201;Pex14-202;Pex14-205;Pex14-203;Pex14-204,Pex14;Pex14;Pex14;Pex14;Pex14,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,41,48,56273,ENSMUSG00000028975,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26413,cg09497746,0.0000423,0.00000305,13.84913667,2.76E-34,gain,yes,-0.00000563,0.00000519,-1.085760417,0.278428586,neg,ns,0.003005907,0.00151907,1.978780744,0.048725452,pos,ns,1.312244125,0.000093,0.0000522,1.780720904,0.075937254,pos,ns,0.06269539,Cdx2,Cdx2_Promoter,5,147307286,147307335,147307334,147307335,50,+,TTACAAGACTCTATTAGTAATGACACAGACACCAATGGTTGGAGACGTCG,Promoter (<=1kb),5,147300805,147307270,6466,2,Cdx2-201,-16,Cdx2-201,Cdx2,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,7,12591,ENSMUSG00000029646,conserved gene and region,5,147307331,147307436,106,*,106,9,0.632075472,0.851785714,0.08490566,0.0000015,CpGisland,TRUE,U13,Hc-P
17765,cg24502926,0.0000124,0.00000291,4.274112331,0.0000256,gain,ns,-0.00000536,0.00000494,-1.085755886,0.278430588,neg,ns,0.001200367,0.001447243,0.829416023,0.407507241,pos,ns,0.38986467,0.00000626,0.0000498,0.12579875,0.899972777,pos,ns,0.874882821,Son,Son_Exon,16,91656384,91656433,91656384,91656385,50,-,CGACAGCGCTGGAATCCTATAATACGGTAGCACAGGAGCTGCCTACTACA,"Exon (Son-203/Son, exon 3 of 12)",16,91647506,91679207,31702,1,Son-203,8878,Son-203;Son-204;Son-202;Son-208;Son-201;Son-205;Son-212,Son;Son;Son;Son;Son;Son;Son,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,31,20658,ENSMUSG00000022961,conserved gene and region,16,91656231,91656409,179,*,179,11,0.603351955,0.686780607,0.061452514,0.00000161,CpGisland,TRUE,U10,Tr-S
14411,cg15253243,0.00000311,0.00000226,1.37306928,0.170723159,gain,ns,0.00000417,0.00000384,1.08575345,0.278431664,pos,ns,0.003012355,0.001125812,2.675718626,0.007853143,pos,ns,2.104956486,-0.0000879,0.0000387,-2.271108241,0.023825922,neg,ns,0.050899334,Tmem198,Tmem198_fiveUTR,1,75479547,75479596,75479595,75479596,50,+,GAGTGACGTCAGGAGCAGAGGCCGGAGCTGTCCATCAGCACCAAAGGCCG,Promoter (<=1kb),1,75479576,75482612,3037,1,Tmem198-203,0,Chpf-201;Chpf-202;Chpf-205;Chpf-204;Chpf-203;Obsl1-212;Tmem198-202;Tmem198-203;Tmem198-201;Tmem198-204,Chpf;Chpf;Chpf;Chpf;Chpf;Obsl1;Tmem198;Tmem198;Tmem198;Tmem198,-276;-240;-801;-428;-433;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,1,319998,ENSMUSG00000051703,conserved gene and region,1,75478648,75479879,1232,*,1232,123,0.731331169,0.746688742,0.099837662,5.96E-93,CpGisland,TRUE,NA,NRS
26691,cg03948541,-0.0000701,0.0000126,-5.575691153,5.37E-08,loss,yes,0.0000232,0.0000214,1.085736534,0.278439138,pos,ns,-0.004394013,0.006258159,-0.702125463,0.483127755,neg,ns,0.315938012,-0.000498094,0.000215218,-2.314373253,0.021300599,neg,ns,0.599524107,Adgrl4,Adgrl4_Intergenic_upstream,3,151136038,151136087,151136086,151136087,50,-,TTACCTGAGCCTCAAGTGATTCTAATGTTACCATTAACCCTGGAGGCCCG,Distal Intergenic,3,151437887,151545086,107200,1,Adgrl4-201,-301849,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,170757,ENSMUSG00000039167,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14976,cg12931701,0.0000429,0.0000237,1.81109046,0.071094686,gain,ns,-0.0000437,0.0000402,-1.085720106,0.278446397,neg,ns,0.002472323,0.011789307,0.209708906,0.834032625,pos,ns,0.07881696,-0.00000285,0.000405433,-0.007017393,0.99440549,neg,ns,0.702313156,Crim1,Crim1_Exon,17,78279975,78280024,78280023,78280024,50,-,GAGAAGCCAGATTGCTCCAAGGCCCGCTGTGAAGTCCAGTTCTCTCCACG,"Exon (Crim1-201/Crim1, exon 3 of 17)",17,78200248,78376592,176345,1,Crim1-201,79727,Crim1-201;Crim1-204;Crim1-205;Crim1-206;Crim1-202,Crim1;Crim1;Crim1;Crim1;Crim1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,50766,ENSMUSG00000024074,conserved gene and region,17,78279999,78280123,125,*,125,10,0.632,0.802310655,0.08,0.000000531,CpGisland,TRUE,NA,NRS
15619,cg07856256,0.00000531,0.00000338,1.571828149,0.117010465,gain,ns,-0.00000623,0.00000574,-1.085684066,0.278462322,neg,ns,0.001642606,0.001681844,0.97666952,0.329494319,pos,ns,0.482152069,0.0000158,0.0000578,0.273016827,0.785022066,pos,ns,0.526468095,Nfib,Nfib_Intron,4,82304394,82304443,82304394,82304395,50,-,CGTAAGATTAAGTTTGTCCTACCTAAGCGAACAAAGAGTGCTCTGAACAG,"Intron (Nfib-201/Nfib, intron 11 of 11)",4,82290173,82505308,215136,2,Nfib-201,200865,Nfib-201;Nfib-203;Nfib-202;Nfib-205;Nfib-206;Nfib-204,Nfib;Nfib;Nfib;Nfib;Nfib;Nfib,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,66,18028,ENSMUSG00000008575,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18248,cg19742412,0.0000274,0.00000517,5.297471515,0.000000223,gain,yes,0.00000954,0.00000879,1.085617898,0.278491561,pos,ns,0.008155689,0.002574939,3.167332888,0.001691662,pos,ns,2.771686341,-0.000120629,0.0000886,-1.362239813,0.17411116,neg,ns,0.140920998,Ap3b1,Ap3b1_Intergenic_downstream,13,94596412,94596461,94596412,94596413,50,+,CGGAGTGATTTATAGGCGGTTTTAACTGTAGGCTATGATTAGGGGGCTGG,Distal Intergenic,13,94542303,94547867,5565,1,Ap3b1-202,54109,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,33,55,11774,ENSMUSG00000021686,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22685,cg11617475,0.000000806,0.00000203,0.397007444,0.691635156,gain,ns,0.00000374,0.00000345,1.085384546,0.278594693,pos,ns,0.001720472,0.001010388,1.702783957,0.089610859,pos,ns,1.047639359,-0.0000669,0.0000347,-1.92572277,0.055053419,neg,ns,0.04311703,Maf,Maf_Exon,8,115705927,115705976,115705975,115705976,50,-,GGACGTGTCTCTGCTGCACCCTCTTGAAGCGGCAGGACTGGGCATAGCCG,"Exon (Maf-201/Maf, exon 1 of 3)",8,115682942,115707096,24155,2,Maf-201,1120,Maf-201;Maf-202,Maf;Maf,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,23,17132,ENSMUSG00000055435,conserved gene and region,8,115705919,115706789,871,*,871,113,0.732491389,0.967968135,0.129735936,6.29E-100,CpGisland,TRUE,U1,Pr-A
11697,cg17958658,0.0000839,0.00000681,12.31165768,1.25E-28,gain,yes,-0.0000126,0.0000116,-1.085336243,0.278616044,neg,ns,0.003215176,0.003389826,0.948478097,0.343624914,pos,ns,0.463915356,0.000207595,0.000116576,1.780775138,0.075928371,pos,ns,0.189685407,Spock2,Spock2_Exon,10,60106590,60106639,60106590,60106591,50,+,CGAGCAATGGCTGTCGTCCATCTCGCAGTACAGCGGCAAGATCAAGCACT,Promoter (<=1kb),10,60106219,60127338,21120,1,Spock2-202,371,Spock2-202;Spock2-201;Spock2-203,Spock2;Spock2;Spock2,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,94214,ENSMUSG00000058297,conserved gene and region,10,60106466,60107061,596,*,596,60,0.708053691,0.803667745,0.100671141,6.32E-46,CpGisland,TRUE,U3,Pr-B
16581,cg12479750,-0.0000135,0.00000673,-2.012287067,0.045054342,loss,ns,0.0000124,0.0000114,1.085323695,0.278621591,pos,ns,-0.006283146,0.003347661,-1.876876562,0.061474114,neg,ns,1.211307725,0.000176174,0.000115126,1.530278225,0.126967646,pos,ns,0.692013101,Gm5231,Gm5231_Intergenic_downstream,17,85530424,85530473,85530472,85530473,50,+,CACCGTAAGCATATTATCTGAGACACAGATGTCTTCTATGACCCCACACG,Distal Intergenic,17,85541625,85542703,1079,2,Gm5231-201,12230,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,11,383282,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26682,cg07752916,-0.0000164,0.00000385,-4.250376394,0.0000283,loss,ns,0.0000071,0.00000654,1.0852443,0.278656689,pos,ns,-0.004685754,0.001915482,-2.446253642,0.014990412,neg,ns,1.824186424,0.0000491,0.0000659,0.745945921,0.456265345,pos,ns,0.910705892,Maged2,Maged2_Exon,X,150810366,150810415,150810366,150810367,50,-,CGTTCAATGATTTCGGGGTACACATCAGTGTATTCTTTGATGATGTCCTT,"Exon (Maged2-203/Maged2, exon 6 of 13)",20,150806370,150814345,7976,2,Maged2-203,3930,Maged2-203;Maged2-209;Maged2-204;Maged2-201;Maged2-202;Maged2-210;Maged2-208;Maged2-205;Maged2-206;Maged2-207,Maged2;Maged2;Maged2;Maged2;Maged2;Maged2;Maged2;Maged2;Maged2;Maged2,0;0;0;0;0;2663;2739;2046;3866;2543,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,80884,ENSMUSG00000025268,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12245,cg26616379,-8.26E-08,0.00000172,-0.048108261,0.961660942,loss,ns,0.00000316,0.00000292,1.085135111,0.278704963,pos,ns,0.002637346,0.000854232,3.087386968,0.002201739,pos,ns,2.657234069,-0.0000739,0.0000294,-2.515394728,0.012395317,neg,ns,0.070605059,Ptch1,Ptch1_fiveUTR,13,63563741,63563790,63563789,63563790,50,+,ACAACCCAGTTTAAATAAGAGTCTCTGAAACTTCGCTCTCAGCCACAGCG,5' UTR,13,63508328,63565735,57408,2,Ptch1-201,1945,Ptch1-201;Ptch1-204;Ptch1-206;Ptch1-202;Ptch1-207;Ptch1-203;Ptch1-205,Ptch1;Ptch1;Ptch1;Ptch1;Ptch1;Ptch1;Ptch1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,9,36,19206,ENSMUSG00000021466,conserved gene and region,13,63563774,63564066,293,*,293,23,0.686006826,0.669215492,0.078498294,2.20E-15,CpGisland,TRUE,U1,Pr-A
20474,cg09580337,0.0000348,0.00000548,6.348953267,7.70E-10,gain,yes,-0.0000101,0.0000093,-1.085117822,0.278712607,neg,ns,0.008530232,0.002725891,3.129337216,0.001918668,pos,ns,2.717000058,-0.000213887,0.0000937,-2.281631868,0.023188777,neg,ns,0.078854017,Hoxc4,Hoxc4_Intergenic_downstream,15,103061692,103061741,103061692,103061693,50,-,CGTGATTTATGACTTCAATCTTGGTTCACCGAGAGTTCACACGGCTTTCG,Distal Intergenic,15,103034395,103036852,2458,1,Hoxc4-201,27346,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,32,91,15423,ENSMUSG00000075394,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
12430,cg18874836,-0.0000101,0.0000131,-0.77318257,0.44000349,loss,ns,0.0000241,0.0000222,1.084883854,0.278816068,pos,ns,0.012843828,0.006511067,1.972615073,0.049427777,pos,ns,1.30602892,-0.000504641,0.000223915,-2.253717281,0.024912309,neg,ns,0.755929496,Trpm1,Trpm1_Exon,7,64243549,64243598,64243597,64243598,50,+,ATGCCCTACTGGATGATCTATGGAGAGGTGTTTGCAGACCAGATAGACCG,"Exon (Trpm1-201/Trpm1, exon 22 of 27)",7,64153835,64269775,115941,1,Trpm1-201,89714,Trpm1-201;Trpm1-218;Trpm1-219;Trpm1-217;Trpm1-214;Trpm1-205;Trpm1-223,Trpm1;Trpm1;Trpm1;Trpm1;Trpm1;Trpm1;Trpm1,0;0;0;0;16968;-1213;-1426,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,17364,ENSMUSG00000030523,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27145,cg21119395,-0.00000186,0.0000109,-0.17146706,0.863968401,loss,ns,0.00002,0.0000185,1.084716919,0.278889902,pos,ns,0.00131656,0.005406424,0.243517659,0.807765474,pos,ns,0.092714714,0.000120488,0.000185926,0.648039089,0.517439347,pos,ns,0.873853213,Rps6ka3,Rps6ka3_threeUTR,X,159363542,159363591,159363542,159363543,50,+,CGACAGGTAGCACGTATCTGAGAGACACCTGCAAGCACACACTGTCCCAG,3' UTR,20,159210307,159364502,154196,1,Rps6ka3-204,153235,Rps6ka3-204;Rps6ka3-201;Rps6ka3-206;Rps6ka3-208,Rps6ka3;Rps6ka3;Rps6ka3;Rps6ka3,0;0;1221;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,6,110651,ENSMUSG00000031309,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27373,cg26551743,-0.0000159,0.00000955,-1.669836565,0.095961096,loss,ns,0.0000176,0.0000162,1.084632107,0.27892742,pos,ns,0.002218345,0.00475125,0.466897173,0.64090142,pos,ns,0.193208766,-0.0000293,0.000163395,-0.179044609,0.858019636,neg,ns,0.616791135,Zmynd8,Zmynd8_Exon,2,165846109,165846158,165846157,165846158,50,-,CAAAGGACTTGGCCTTCCCGGTGACAAACCCAGCAGTAGAAATCATTCCG,"Exon (Zmynd8-205/Zmynd8, exon 3 of 22)",2,165784152,165858173,74022,2,Zmynd8-205,12015,Zmynd8-205;Zmynd8-221;Zmynd8-203;Zmynd8-220;Zmynd8-201;Zmynd8-206;Zmynd8-218;Zmynd8-202;Zmynd8-219;Zmynd8-204;Zmynd8-215;Zmynd8-209;Zmynd8-211;Zmynd8-210,Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,12,228880,ENSMUSG00000039671,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10655,cg18678822,-0.0000107,0.00000681,-1.573845404,0.116543187,loss,ns,-0.0000125,0.0000116,-1.084502396,0.278984805,neg,ns,-0.006631628,0.003387764,-1.957523879,0.051182881,neg,ns,1.290875275,-0.0000774,0.000116505,-0.664543686,0.506836413,neg,ns,0.876791393,Galnt13,Galnt13_Exon,2,54880121,54880170,54880121,54880122,50,+,CGATGCAGGAATGGATATCTGGGGTGGAGAGAATCTTGAAATGTCTTTTA,"Exon (Galnt13-204/Galnt13, exon 7 of 12)",2,54436317,55118309,681993,1,Galnt13-204,443804,Galnt13-204;Galnt13-202;Galnt13-203;Galnt13-201,Galnt13;Galnt13;Galnt13;Galnt13,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,271786,ENSMUSG00000060988,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10642,cg19106010,-0.0000441,0.00000995,-4.434667035,0.0000128,loss,ns,-0.0000183,0.0000169,-1.084333078,0.279059724,neg,ns,0.016406923,0.004952955,3.312552349,0.001033853,pos,ns,2.985541146,-0.001962725,0.000170332,-11.52295948,8.25E-26,neg,yes,0.729649936,Ankrd44,Ankrd44_Exon,1,54778303,54778352,54778351,54778352,50,-,ACAGCCCGGTGCAGTGGAGTCAGCCACATGTTGTCCTTGGCATTTACACG,"Exon (Ankrd44-210/Ankrd44, exon 4 of 28)",1,54645340,54926387,281048,2,Ankrd44-210,148035,Ankrd44-210;Ankrd44-201;Ankrd44-209;Ankrd44-214;Ankrd44-208;Ankrd44-202,Ankrd44;Ankrd44;Ankrd44;Ankrd44;Ankrd44;Ankrd44,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,329154,ENSMUSG00000052331,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14882,cg19814508,-0.0000117,0.000003,-3.884381534,0.000125441,loss,ns,-0.00000553,0.0000051,-1.084319528,0.279065721,neg,ns,-0.001950003,0.001493807,-1.305391459,0.192727589,neg,ns,0.715056113,0.0000188,0.0000514,0.36638445,0.714328149,pos,ns,0.959684353,Flot2,Flot2_fiveUTR,11,78054779,78054828,78054827,78054828,50,+,TGGCAGGATTTCCCTAGAGATTATGACGTTGCAGCCCCGCTGCGAGGACG,5' UTR,11,78037931,78060434,22504,1,Flot2-201,16848,Flot2-201;Flot2-205;Flot2-203;Flot2-202;Flot2-204,Flot2;Flot2;Flot2;Flot2;Flot2,0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,TRUE,TRUE,TRUE,FALSE,FALSE,fiveUTR,9,13,14252,ENSMUSG00000061981,conserved gene but different region,11,78054805,78054920,116,*,116,9,0.612068966,0.836538462,0.077586207,0.00000318,CpGisland,TRUE,NA,NRS
2405,cg01882022,0.000178289,0.0000214,8.327252976,2.69E-15,gain,yes,-0.0000394,0.0000364,-1.084234888,0.279103178,neg,ns,0.017155807,0.010656128,1.609947594,0.108427071,pos,ns,0.964862273,0.000558142,0.000366463,1.523049256,0.128765807,pos,ns,0.128875083,Fosb,Fosb_threeUTR,7,19304987,19305036,19304987,19304988,50,-,CGCCGAGGACTTGAACTTCACTGTGTGTAAAGAGAGAAGCCGTCAGGTTG,3' UTR,7,19302696,19310051,7356,2,Fosb-201,5015,Fosb-201;Fosb-202;Fosb-203;Fosb-205;Fosb-207;Fosb-206;Fosb-204,Fosb;Fosb;Fosb;Fosb;Fosb;Fosb;Fosb,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,13,14282,ENSMUSG00000003545,mapped to different genes,7,19304862,19305262,401,*,401,35,0.648379052,0.848600278,0.087281796,9.48E-25,CpGisland,TRUE,U3,Pr-B
25455,cg02713637,0.00000398,0.00000533,0.747426906,0.45537247,gain,ns,0.00000981,0.00000905,1.08415089,0.279140355,pos,ns,0.005131754,0.002650477,1.936162779,0.053756574,pos,ns,1.269568415,0.000000689,0.0000911,0.007556732,0.993975518,pos,ns,0.908258674,Ephb2,Ephb2_Intron,4,136734490,136734539,136734538,136734539,50,-,AAAATTAAATTAAAACCACGACAGGGACAGTTAATTAAAGCAGATTAGCG,"Intron (Ephb2-202/Ephb2, intron 3 of 15)",4,136647539,136835988,188450,2,Ephb2-202,101449,Ephb2-202;Ephb2-201;Ephb2-203,Ephb2;Ephb2;Ephb2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,15,13844,ENSMUSG00000028664,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13447,cg24186450,-0.00000168,0.00000853,-0.197519702,0.843550314,loss,ns,0.0000157,0.0000145,1.084149272,0.279141071,pos,ns,0.004832432,0.004243874,1.138684268,0.25571405,pos,ns,0.592245409,-0.000124194,0.000145946,-0.85095816,0.395449411,neg,ns,0.924680028,Sltm,Sltm_Exon,9,70584074,70584123,70584074,70584075,50,+,CGCGAACGCTTGGAAAGGGAACGCATTCGTATTGAACAGGTGCAGTCAGA,"Exon (Sltm-206/Sltm, exon 15 of 21)",9,70542754,70592234,49481,1,Sltm-206,41320,Sltm-206;Sltm-203;Sltm-201;Sltm-208;Sltm-204;Sltm-207,Sltm;Sltm;Sltm;Sltm;Sltm;Sltm,0;0;0;0;8666;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,11,66660,ENSMUSG00000032212,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8892,cg22696147,-0.00000577,0.00000391,-1.477593086,0.140531944,loss,ns,0.00000719,0.00000663,1.083927178,0.279239383,pos,ns,-0.000314552,0.001943676,-0.161833663,0.87154227,neg,ns,0.059711545,-0.0000115,0.0000668,-0.1722687,0.8633387,neg,ns,0.920320049,Gbf1,Gbf1_threeUTR,19,46268785,46268834,46268785,46268786,50,+,CGCAAAAATCTGAAAGGTGTGAATGGAGGCAAGGACTTTGAGCAAGACAT,Promoter (<=1kb),19,46268797,46270711,1915,1,Gbf1-212,0,Gbf1-201;Gbf1-214;Gbf1-213;Gbf1-215;Gbf1-212;Gbf1-208,Gbf1;Gbf1;Gbf1;Gbf1;Gbf1;Gbf1,0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,18,107338,ENSMUSG00000025224,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8683,cg06520878,0.000013,0.0000192,0.679388716,0.49739855,gain,ns,0.0000354,0.0000326,1.083817525,0.279287931,pos,ns,0.018635159,0.00955618,1.950063557,0.052069703,pos,ns,1.283414904,-0.000395955,0.000328636,-1.204842226,0.2291832,neg,ns,0.613746237,Tmem151b,Tmem151b_Exon,17,45547006,45547055,45547054,45547055,50,-,CGTTGGAGCAGGGGCTGTCATGGTACATGAGGCTGTTGCCCTGGTAGGCG,"Exon (Tmem151b-201/Tmem151b, exon 2 of 3)",17,45541952,45549677,7726,2,Tmem151b-201,2622,Tcte1-201;Tcte1-202;Tmem151b-201,Tcte1;Tcte1;Tmem151b,23572;13953;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,210573,ENSMUSG00000096847,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
12403,cg08855194,0.0000294,0.00000369,7.963527632,3.20E-14,gain,yes,-0.00000679,0.00000627,-1.083806429,0.279292844,neg,ns,0.005932864,0.001836535,3.230466377,0.001368623,pos,ns,2.863716302,-0.000159313,0.0000632,-2.522434037,0.012154963,neg,ns,0.039917445,Fign,Fign_Promoter,2,64097413,64097462,64097461,64097462,50,+,TGTGCAAGATTCTTATTTACACTTCTTATTTACTTAGAAGTTAGTTCCCG,Promoter (<=1kb),2,63971507,64098012,126506,2,Fign-203,550,Fign-203;Fign-201;Fign-202;Fign-204,Fign;Fign;Fign;Fign,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,12,84,60344,ENSMUSG00000075324,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
12428,cg21419618,0.000025,0.000144744,0.172591281,0.863085332,gain,ns,0.000266503,0.0002459,1.083783925,0.279302809,pos,ns,-0.12140312,0.072040438,-1.685207964,0.092954773,neg,ns,1.031728305,0.005798013,0.002477465,2.340301047,0.019902216,pos,ns,0.423882894,Msra,Msra_Intron,14,64233693,64233742,64233693,64233694,50,-,CGTCAATAAATGTCTGCAATCATATTCTTGAGCTCCTGTGTGATTTCAAG,"Intron (Msra-201/Msra, intron 9 of 10)",14,64122625,64455903,333279,2,Msra-201,222161,Msra-201;Msra-205;Msra-204,Msra;Msra;Msra,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,4,110265,ENSMUSG00000054733,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18880,cg14102390,0.0000238,0.00000493,4.828418243,0.00000217,gain,ns,-0.00000908,0.00000838,-1.083753167,0.279316428,neg,ns,0.001616401,0.002455238,0.658347835,0.510803273,pos,ns,0.291746328,-0.00009,0.0000844,-1.066196741,0.28716438,neg,ns,0.070709384,Mitf,Mitf_Exon,6,97807222,97807271,97807222,97807223,50,-,CGGGGAGGAGTTTCATGAAGAGCCCAAAACCTATTACGAACTCAAAAGTC,Promoter (<=1kb),6,97807052,98018593,211542,1,Mitf-207,170,Mitf-207;Mitf-206;Mitf-202,Mitf;Mitf;Mitf,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,16,17342,ENSMUSG00000035158,conserved gene and region,6,97806973,97807259,287,*,287,27,0.655052265,0.885094232,0.094076655,4.06E-20,CpGisland,TRUE,NA,NRS
3437,cg13978957,0.00000126,0.00000395,0.320053136,0.749143656,gain,ns,-0.00000727,0.00000671,-1.083334113,0.279502027,neg,ns,-0.006055487,0.001965228,-3.081315424,0.002245757,neg,ns,2.64863727,0.000125711,0.0000676,1.860073506,0.063822079,pos,ns,0.048973141,Bcl11a,Bcl11a_Exon,11,24078400,24078449,24078400,24078401,50,+,CGCAAGCAAGGCAAACCCCAGCACTTAAGCAAACGGGAATTCTCGCGTAA,Promoter (<=1kb),11,24078056,24173194,95139,1,Bcl11a-201,344,A830031A19Rik-201;Bcl11a-201;Bcl11a-203;Bcl11a-205;Bcl11a-202;Bcl11a-204,A830031A19Rik;Bcl11a;Bcl11a;Bcl11a;Bcl11a;Bcl11a,0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,51,98,14025,ENSMUSG00000000861,conserved gene and region,11,24078318,24078446,129,*,129,20,0.705426357,1.347962382,0.15503876,8.63E-20,CpGisland,TRUE,NA,NRS
2389,cg03159396,0.0000116,0.00000864,1.347657874,0.17875251,gain,ns,0.0000159,0.0000147,1.083302086,0.279516215,pos,ns,0.004327032,0.004298281,1.006689022,0.314869357,pos,ns,0.501869603,-0.00017793,0.000147818,-1.203713234,0.229618788,neg,ns,0.108736038,Tfap2b,Tfap2b_Intron,1,19231934,19231983,19231934,19231935,50,-,CGTGATTGGAATTTGATTGCCCCTTTCCGCAGGGTCAAAAAATATTAATG,"Intron (Tfap2b-201/Tfap2b, intron 6 of 6)",1,19208914,19238576,29663,1,Tfap2b-201,23020,Tfap2b-201;Tfap2b-204;Tfap2b-202,Tfap2b;Tfap2b;Tfap2b,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,40,21419,ENSMUSG00000025927,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25900,cg18505437,-0.00000422,0.0000023,-1.834934797,0.067473404,loss,ns,-0.00000424,0.00000391,-1.083161753,0.279578389,neg,ns,0.001590856,0.001145791,1.388434836,0.166001524,pos,ns,0.779887924,-0.0000911,0.0000394,-2.312745686,0.02139118,neg,ns,0.952847213,Plekha5,Plekha5_Exon,6,140563572,140563621,140563620,140563621,50,-,AAGAAAATGAACCTATTATCACCATGGTTCACACAATGATTGAGAACTCG,"Exon (Plekha5-201/Plekha5, exon 16 of 31)",6,140424054,140597110,173057,1,Plekha5-201,139518,Plekha5-201;Plekha5-209;Plekha5-205;Plekha5-207;Plekha5-215;Plekha5-208;Plekha5-202;Plekha5-214;Plekha5-216,Plekha5;Plekha5;Plekha5;Plekha5;Plekha5;Plekha5;Plekha5;Plekha5;Plekha5,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,3,109135,ENSMUSG00000030231,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24882,cg06359256,0.0000751,0.00000602,12.46542081,3.48E-29,gain,yes,-0.0000111,0.0000102,-1.083117377,0.279598052,neg,ns,0.006765111,0.002997999,2.256542476,0.024732944,pos,ns,1.606724191,-0.0000334,0.000103101,-0.324157593,0.746037331,neg,ns,0.155656373,Pitx2,Pitx2_Intron,3,129208113,129208162,129208161,129208162,50,+,GTCTTCCTAATATTGACTGAATGGGTAATTAATGGCTCTTCATCTAGGCG,"Intron (Pitx2-207/Pitx2, intron 3 of 4)",3,129199878,129219590,19713,1,Pitx2-207,8235,Pitx2-207;Pitx2-201;Pitx2-203;Pitx2-205;Pitx2-204,Pitx2;Pitx2;Pitx2;Pitx2;Pitx2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,24,18741,ENSMUSG00000028023,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
22753,cg24033437,-0.00000185,0.00000304,-0.608364518,0.543391218,loss,ns,0.00000559,0.00000516,1.083086126,0.2796119,pos,ns,0.00244742,0.001512667,1.617949665,0.106690436,pos,ns,0.97187451,-0.000113589,0.000052,-2.183550457,0.029744773,neg,ns,0.922671897,Sox6,Sox6_Intron,7,115919833,115919882,115919833,115919834,50,+,CGACATCTTCAGGTGTTTCCAAATGAGCTCACAGAAGAGTGATTAAATGC,"Intron (Sox6-210/Sox6, intron 2 of 15)",7,115470872,116031047,560176,2,Sox6-210,111165,Sox6-210;Sox6-201;Sox6-202;Sox6-204;Sox6-206;Sox6-209;Sox6-214;Sox6-208,Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,37,57,20679,ENSMUSG00000051910,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9954,cg07829577,-0.0000146,0.00000505,-2.881112369,0.004239105,loss,ns,0.00000929,0.00000858,1.08286604,0.279709436,pos,ns,0.004606637,0.002513851,1.832501895,0.067835765,pos,ns,1.168541275,-0.000211561,0.0000865,-2.447179136,0.014952719,neg,ns,0.592321807,Hectd1,Hectd1_Exon,12,51748470,51748519,51748518,51748519,50,+,TTTGTGTTCTTCTCATCTTCAGAAAGACCTTTGTTGCTTAAAATTTGGCG,"Exon (Hectd1-201/Hectd1, exon 38 of 43)",12,51743722,51829536,85815,2,Hectd1-201,81017,Ap4s1-202;Hectd1-201;Hectd1-202,Ap4s1;Hectd1;Hectd1,57437;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,19,19,207304,ENSMUSG00000035247,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13524,cg18584182,-0.0000181,0.0000065,-2.788276811,0.005626327,loss,ns,-0.000012,0.000011,-1.082747638,0.279761918,neg,ns,-0.001437153,0.003236657,-0.444023853,0.657335121,neg,ns,0.182213163,-0.0000601,0.000111308,-0.53953498,0.589905079,neg,ns,0.933553116,Gm10172,Gm10172_Intergenic_downstream,7,71145996,71146045,71145996,71145997,50,-,CGCAGCCCCTGACCTGTAAAGAAGTCTAACAAATTGGCTTCTATTGTGGA,Distal Intergenic,7,71332363,71332921,559,2,Gm10172-201,186925,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,31,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10500,cg15675612,-0.00000023,0.000000484,-0.475932097,0.634457979,loss,ns,0.00000089,0.000000822,1.082667852,0.279797287,pos,ns,0.000230183,0.000240788,0.955957344,0.339838664,pos,ns,0.468727213,-0.0000132,0.00000828,-1.593277045,0.112117121,neg,ns,0.986398799,Hecw2,Hecw2_Exon,1,53904376,53904425,53904424,53904425,50,-,CGGACTTTGGTGATCATGTGCTTCAAACACGTGTTGTTTGTAAACATGCG,"Exon (Hecw2-203/Hecw2, exon 14 of 29)",1,53806876,54194048,387173,2,Hecw2-203,289623,Hecw2-203;Hecw2-201,Hecw2;Hecw2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,6,329152,ENSMUSG00000042807,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13391,cg23042706,0.0000373,0.00000453,8.237140997,5.00E-15,gain,yes,-0.00000833,0.00000769,-1.082597832,0.279828329,neg,ns,0.006228343,0.002253523,2.763825446,0.006054536,pos,ns,2.217919132,-0.000174097,0.0000775,-2.246451744,0.025378791,neg,ns,0.04948206,Nr2f2,Nr2f2_fiveUTR,7,70359882,70359931,70359882,70359883,50,+,CGATACCTTCCCGTCTCATGCCCACTTTGAGGCACTTTTTGAGGCGGCAG,Promoter (<=1kb),7,70357763,70359921,2159,2,Nr2f2-204,0,Nr2f2-201;Nr2f2-203;Nr2f2-202;Nr2f2-205;Nr2f2-204;Nr2f2-206,Nr2f2;Nr2f2;Nr2f2;Nr2f2;Nr2f2;Nr2f2,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,69,11819,ENSMUSG00000030551,conserved gene and region,7,70359750,70360467,718,*,718,76,0.703342618,0.857367313,0.105849582,8.30E-60,CpGisland,TRUE,U1,Pr-A
6351,cg13656158,0.00000397,0.00000346,1.146426688,0.252502769,gain,ns,-0.00000637,0.00000588,-1.082557023,0.279846422,neg,ns,-0.001699956,0.001723335,-0.986433443,0.324689736,neg,ns,0.48853144,-0.0000412,0.0000593,-0.695172808,0.487467757,neg,ns,0.929215948,Wfs1,Wfs1_Exon,5,36967003,36967052,36967051,36967052,50,-,AGGCAGCTGATGGCCTTGAGCTCGAAGACAGGCCACTTGCTGCCCAGGCG,"Exon (Wfs1-201/Wfs1, exon 8 of 8)",5,36966104,36989205,23102,2,Wfs1-201,22153,Wfs1-201;Wfs1-202;Wfs1-203,Wfs1;Wfs1;Wfs1,0;0;9904,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,22393,ENSMUSG00000039474,conserved gene and region,5,36966860,36967182,323,*,323,23,0.609907121,0.769047619,0.07120743,1.95E-14,CpGisland,TRUE,U10,Tr-S
27687,cg01122770,-0.00000938,0.00000442,-2.125275427,0.03435421,loss,ns,-0.00000812,0.0000075,-1.082421629,0.279906457,neg,ns,-0.007368084,0.00219773,-3.352587847,0.000899818,neg,ns,3.045845528,0.000358546,0.0000756,4.743935465,0.0000032,pos,ns,0.845089276,Akt3,Akt3_Intron,1,177150857,177150906,177150857,177150858,50,+,CGTCAAGAGTTCTGCTGCAGAGTAGATAAATCATGTTGGGTTTTTTCCTC,"Intron (Akt3-201/Akt3, intron 1 of 12)",1,177020073,177248805,228733,2,Akt3-201,97899,Akt3-201;Akt3-203;Akt3-202,Akt3;Akt3;Akt3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,14,23797,ENSMUSG00000019699,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7477,cg08089064,0.0000251,0.0000118,2.117662571,0.034999474,gain,ns,0.0000218,0.0000201,1.082375941,0.279926717,pos,ns,0.026485308,0.005895197,4.492692661,0.00000994,pos,ns,5.002639916,-0.001366215,0.000202735,-6.738909233,7.78E-11,neg,yes,0.843848592,Pou3f3,Pou3f3_Intron,1,42741687,42741736,42741735,42741736,50,+,TTAATCAGTCCAATATCAATATAATAAATTCCTGCAAATTGGAGCGATCG,"Intron (Gm20646-201/Gm20646-201, intron 1 of 1)",1,42695768,42703176,7409,1,Pou3f3-201,45919,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,37,18993,ENSMUSG00000045515,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20696,cg10877507,0.0000114,0.0000159,0.717701258,0.473481987,gain,ns,0.0000292,0.0000269,1.082248763,0.279983119,pos,ns,0.016701127,0.007894341,2.11558202,0.03517762,pos,ns,1.453733542,-0.000210563,0.000271486,-0.775595333,0.43857922,neg,ns,0.181756068,Gsc,Gsc_Promoter,12,104477780,104477829,104477828,104477829,50,-,GAAATTGGCCTATAGCCTTTTGATATGTAAACATTTCAGCCTTTTATGCG,Promoter (4-5kb),12,104471209,104473330,2122,2,Gsc-201,-4499,Gsc-201,Gsc,-4450,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,4,14836,ENSMUSG00000021095,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
6190,cg07134971,-0.00000492,0.0000013,-3.797011875,0.000176181,loss,ns,0.00000238,0.0000022,1.082236513,0.279988552,pos,ns,0.0000538,0.000645369,0.083371787,0.93360973,pos,ns,0.029834631,-0.0000152,0.0000222,-0.686245674,0.493071141,neg,ns,0.049465725,Pura,Pura_Exon,18,36287806,36287855,36287806,36287807,50,-,CGAGCTGCCCGAGGGCACCTCCTTGACTGTGGACAACAAGCGCTTCTTCT,"Exon (Pura-201/Pura, exon 2 of 2)",18,36281097,36292535,11439,1,Pura-201,6709,Pura-201,Pura,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,13,19,19290,ENSMUSG00000043991,conserved gene and region,18,36286687,36288029,1343,*,1343,129,0.68652271,0.823041768,0.096053611,4.14E-95,CpGisland,TRUE,U4,Pr-F
21861,cg13222741,-0.0000124,0.00000571,-2.168939961,0.030847161,loss,ns,-0.0000105,0.0000097,-1.082235666,0.279988928,neg,ns,-0.006128681,0.002841032,-2.157202592,0.031758128,neg,ns,1.498145107,-0.000015,0.0000977,-0.153915719,0.877776339,neg,ns,0.877430114,Lmo1,Lmo1_Intergenic_upstream,7,109261962,109262011,109261962,109261963,50,+,CGGCTCCCCGTGACCTTATTCAATCTTGGGGCTGATCGGGAAATATATTG,Distal Intergenic,7,109138675,109175207,36533,2,Lmo1-202,-86755,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,34,66,109594,ENSMUSG00000036111,mapped to different genes,7,109261896,109261999,104,*,104,9,0.567307692,1.090909091,0.086538462,0.00000128,CpGisland,TRUE,U15,NS
393,cg26564284,-0.00000336,0.00000139,-2.420732189,0.016063535,loss,ns,0.00000255,0.00000236,1.082233837,0.279989739,pos,ns,0.000638313,0.000690084,0.924979721,0.355695925,pos,ns,0.44892111,-0.0000393,0.0000237,-1.654748216,0.098987629,neg,ns,0.964082054,Zfhx4,Zfhx4_Intron,3,5357948,5357997,5357948,5357949,50,-,CGAATCCCAGCGCAAATGACTGAATCGATAGGAAACCAGCCACTGCTGTT,"Intron (Zfhx4-203/Zfhx4, intron 4 of 10)",3,5218526,5413165,194640,1,Zfhx4-203,139422,Zfhx4-203;Zfhx4-201;Zfhx4-205,Zfhx4;Zfhx4;Zfhx4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,27,77,80892,ENSMUSG00000025255,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25259,cg16775971,0.00000685,0.00000211,3.25136551,0.001274968,gain,ns,0.00000387,0.00000358,1.082001463,0.280092817,pos,ns,0.004990323,0.001048138,4.761130629,0.00000296,pos,ns,5.528824237,-0.000153665,0.000036,-4.26310593,0.0000268,neg,ns,0.076020008,Cxxc4,Cxxc4_Exon,3,134240450,134240499,134240498,134240499,50,-,CAGCCGTCACAGACAGTGCGTTTCAAATTGCCAATCTGGCAGACTGCCCG,"Exon (Cxxc4-203/Cxxc4, exon 3 of 4)",3,134236484,134259620,23137,1,Cxxc4-204,3966,Cxxc4-204;Cxxc4-203;Cxxc4-202;Cxxc4-201;Cxxc4-205,Cxxc4;Cxxc4;Cxxc4;Cxxc4;Cxxc4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,18,20,319478,ENSMUSG00000044365,mapped to different genes,3,134240265,134240649,385,*,385,21,0.587012987,0.63362069,0.054545455,5.57E-11,CpGisland,TRUE,U3,Pr-B
1252,cg26400001,0.0000641,0.0000104,6.17876,2.03E-09,gain,yes,0.0000191,0.0000176,1.082000722,0.280093146,pos,ns,0.02354407,0.005164091,4.559189889,0.0000074,pos,ns,5.13072288,-0.000859935,0.000177593,-4.84217837,0.00000203,neg,ns,0.048157166,Bcor,Bcor_Intron,X,12135972,12136021,12136020,12136021,50,-,TTCTCCCCATCGATCGCGGAGTGTACAGATGTGAGCGCTTGATGTGCCCG,"Intron (Bcor-201/Bcor, intron 1 of 13)",20,12036743,12160355,123613,2,Bcor-201,24334,Bcor-201;Bcor-208,Bcor;Bcor,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,56,74,71458,ENSMUSG00000040363,conserved gene and region,X,12135982,12136053,72,*,72,10,0.666666667,1.252173913,0.138888889,2.10E-09,CpGisland,TRUE,NA,NRS
15263,cg19658694,0.00000194,0.00000315,0.616628134,0.537932601,gain,ns,0.00000579,0.00000535,1.081978984,0.28010279,pos,ns,0.004435634,0.001566426,2.831690475,0.00493313,pos,ns,2.306877449,-0.00015963,0.0000539,-2.963291306,0.003279411,neg,ns,0.931651995,Hnrnpll,Hnrnpll_Exon,17,80049801,80049850,80049849,80049850,50,+,GGATATTCAACCATTGCTTGTATCCCATTTCTCTTGAATATAACAATACG,"Exon (Hnrnpll-205/Hnrnpll, exon 4 of 13)",17,80029487,80062227,32741,2,Hnrnpll-205,12377,Gpx4-ps1-201;Hnrnpll-205;Hnrnpll-201;Hnrnpll-203;Hnrnpll-204;Hnrnpll-207;Hnrnpll-206,Gpx4-ps1;Hnrnpll;Hnrnpll;Hnrnpll;Hnrnpll;Hnrnpll;Hnrnpll,-4176;0;0;0;0;0;12418,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,6,72692,ENSMUSG00000024095,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23705,cg08022249,0.000000273,0.00000228,0.119877939,0.904657493,gain,ns,0.00000418,0.00000387,1.081903169,0.280136426,pos,ns,0.001315014,0.001132784,1.160869436,0.246588145,pos,ns,0.608027807,-0.0000447,0.000039,-1.146299453,0.252555312,neg,ns,0.945109015,Wnk1,Wnk1_Exon,6,119963612,119963661,119963612,119963613,50,-,CGGATGCGCCATGGACTGAGGCTGTATCAACATGAATAAGACAAGTAATT,"Exon (Wnk1-203/Wnk1, exon 9 of 28)",6,119923969,120038672,114704,2,Wnk1-202,75011,Wnk1-202;Wnk1-203;Wnk1-223;Wnk1-204;Wnk1-224;Wnk1-221;Wnk1-214;Wnk1-211;Wnk1-206;Wnk1-210;Wnk1-218,Wnk1;Wnk1;Wnk1;Wnk1;Wnk1;Wnk1;Wnk1;Wnk1;Wnk1;Wnk1;Wnk1,0;0;0;0;0;0;0;0;0;-682;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,9,232341,ENSMUSG00000045962,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5485,cg00297805,-0.00000554,0.00000455,-1.218528682,0.223949637,loss,ns,0.00000836,0.00000772,1.081819381,0.280173603,pos,ns,0.003113774,0.002262627,1.376176491,0.169760289,pos,ns,0.770163895,-0.000170004,0.0000778,-2.184820261,0.029650592,neg,ns,0.900113402,Mvb12b,Mvb12b_Intron,2,34065929,34065978,34065929,34065930,50,-,CGCCTTCCTGATGGTTCGTATTACTCATATACCAAGAAAATTTCTTCAGA,"Intron (C230014O12Rik-201/C230014O12Rik-201, intron 1 of 3)",2,33729953,33887946,157994,2,Mvb12b-201,-178032,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,28,47,72543,ENSMUSG00000038740,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13298,cg19580159,-0.00000461,0.00000314,-1.469976235,0.142582362,loss,ns,0.00000577,0.00000533,1.081805192,0.280179899,pos,ns,0.000518957,0.001561941,0.332251435,0.73992395,pos,ns,0.130812915,0.0000885,0.0000537,1.64676662,0.10061933,pos,ns,0.927497582,Pebp4,Pebp4_Intron,14,70026680,70026729,70026680,70026681,50,-,CGTGGGCGTCAAGTTCAATGCCTTCTTGTCAACACTTGAATGTGTTGAAC,"Intron (Pebp4-201/Pebp4, intron 4 of 6)",14,69840420,70059918,219499,1,Pebp4-201,186260,Pebp4-201,Pebp4,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,14,14,73523,ENSMUSG00000022085,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1227,cg05359510,0.000128753,0.0000134,9.584800881,3.16E-19,gain,yes,-0.0000247,0.0000228,-1.081708375,0.280222863,neg,ns,0.03269834,0.006685756,4.890746974,0.00000162,pos,ns,5.791515931,-0.000785317,0.000229923,-3.415572809,0.000721286,neg,ns,0.167352291,Bcor,Bcor_Intron,X,12077181,12077230,12077229,12077230,50,+,AGTCCTATTTTTATCTTGTCTAATCCTAAACTGGGCGGGGAGCACAGGCG,"Intron (Bcor-202/Bcor, intron 1 of 14)",20,12036740,12080553,43814,2,Bcor-202,3323,Bcor-202;Bcor-203;Bcor-204;Bcor-206;Bcor-201;Bcor-207;Bcor-205,Bcor;Bcor;Bcor;Bcor;Bcor;Bcor;Bcor,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,56,74,71458,ENSMUSG00000040363,conserved gene and region,X,12077216,12077550,335,*,335,28,0.671641791,0.755476804,0.08358209,2.26E-19,CpGisland,TRUE,NA,NRS
25794,cg13151303,0.0000147,0.00000543,2.715002283,0.006998914,gain,ns,0.00000997,0.00000922,1.081614575,0.280264491,pos,ns,0.003933514,0.002700215,1.456741261,0.146199934,pos,ns,0.835052824,0.000025,0.0000929,0.269181155,0.787969352,pos,ns,0.077451663,Uncx,Uncx_Intergenic_downstream,5,139548943,139548992,139548943,139548944,50,-,CGCTCTTGTAGCCGGCTATATTAAGATAGATGCCCAATGATATCCCTCAT,Downstream (<1kb),5,139543898,139545268,1371,1,Uncx-202,5094,Uncx-201;Uncx-202,Uncx;Uncx,0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,59,88,22255,ENSMUSG00000029546,conserved gene and region,5,139548855,139548955,101,*,101,9,0.613861386,1.082142857,0.089108911,0.000001,CpGisland,TRUE,U13,Hc-P
6534,cg07975773,-0.0000458,0.0000104,-4.389356976,0.0000156,loss,ns,0.0000192,0.0000177,1.0815196,0.280306646,pos,ns,-0.015645377,0.005192216,-3.013236635,0.002797909,neg,ns,2.553166387,0.000432478,0.00017856,2.422031195,0.016007318,pos,ns,0.653045144,Zfp536,Zfp536_Intron,7,37640026,37640075,37640026,37640027,50,-,CGAACAGGGCAGCAGAGAGGAGAAAAGTCCTTTGTCGCTAATAAGCTGGA,"Intron (Zfp536-202/Zfp536, intron 4 of 6)",7,37479104,37769624,290521,2,Zfp536-202,129549,Zfp536-202;Zfp536-201;Zfp536-203;Zfp536-206;Zfp536-209;Zfp536-208,Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,73,112,243937,ENSMUSG00000043456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7670,cg10288178,0.0000117,0.0000049,2.393532747,0.01728138,gain,ns,0.000009,0.00000832,1.081409988,0.280355302,pos,ns,0.003606761,0.002438251,1.479240675,0.140091434,pos,ns,0.85358842,-0.000112784,0.0000839,-1.345044277,0.179594088,neg,ns,0.935933617,Zbtb20,Zbtb20_threeUTR,16,43618699,43618748,43618699,43618700,50,-,CGAGCAGTTCAACGACCACATGAGGATGCATGTGTCTGACGGATAAGTAG,3' UTR,16,42907652,43642602,734951,1,Zbtb20-204,711047,Zbtb20-204;Zbtb20-201;Zbtb20-203;Zbtb20-202;Zbtb20-205,Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,9,98,56490,ENSMUSG00000022708,conserved gene but different region,16,43618553,43618783,231,*,231,17,0.597402597,0.833404075,0.073593074,4.87E-11,CpGisland,TRUE,U11,Tr-P
12144,cg08343834,-0.0000608,0.00000884,-6.871201496,3.50E-11,loss,yes,0.0000162,0.000015,1.081321397,0.280394632,pos,ns,0.00251397,0.004400973,0.57123057,0.568257248,pos,ns,0.245455016,-0.0000346,0.000151349,-0.228713532,0.81924238,neg,ns,0.507232539,Pmp22,Pmp22_Promoter,11,63128918,63128967,63128966,63128967,50,+,CCATGACATATCCCAGCATTGGACCAGCCCCTGAATAAACTGGAAAGACG,Promoter (<=1kb),11,63128982,63159546,30565,1,Pmp22-204,-15,Pmp22-204;Pmp22-201;Pmp22-203;Pmp22-205;Pmp22-202,Pmp22;Pmp22;Pmp22;Pmp22;Pmp22,-15;-2545;-3602;-3836;-4101,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,1,18858,ENSMUSG00000018217,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14961,cg00785909,0.000039,0.0000181,2.15228572,0.032146573,gain,ns,0.0000333,0.0000308,1.081298987,0.280404581,pos,ns,-0.010714128,0.009023674,-1.187335363,0.236004362,neg,ns,0.62707997,0.000577451,0.000310323,1.860804749,0.063718372,pos,ns,0.445386511,Nr2f1,Nr2f1_Promoter,13,78207050,78207099,78207098,78207099,50,-,CTCTTATTTTCTCTCTGGATCAGCAACTTTGAATAGACATCATCTAATCG,Promoter (7-8kb),13,78188973,78199757,10785,2,Nr2f1-201,-7342,NA,NA,NA,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,6,55,13865,ENSMUSG00000069171,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
10407,cg19993539,0.00000201,0.00000415,0.482985447,0.629446982,gain,ns,0.00000762,0.00000705,1.080977005,0.280547558,pos,ns,0.002632752,0.002066206,1.274196095,0.203548308,pos,ns,0.691332504,-0.000115278,0.0000711,-1.622340657,0.105746944,neg,ns,0.555933587,Mxi1,Mxi1_Exon,19,53370310,53370359,53370358,53370359,50,+,ATGGACAGCATTGGATCAACTATTTCTTCAGATCGTTCTGATTCAGAGCG,"Exon (Mxi1-201/Mxi1, exon 5 of 6)",19,53310518,53373293,62776,1,Mxi1-201,59792,Gm10197-201;Mxi1-201;Mxi1-208;Mxi1-203;Mxi1-202;Mxi1-205;Mxi1-206;Mxi1-204;Mxi1-207,Gm10197;Mxi1;Mxi1;Mxi1;Mxi1;Mxi1;Mxi1;Mxi1;Mxi1,1407;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,10,17859,ENSMUSG00000025025,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1024,cg26941882,0.000000247,0.00000906,0.027286869,0.978248487,gain,ns,0.0000166,0.0000154,1.080959835,0.280555184,pos,ns,0.003852895,0.004509963,0.854307496,0.393594332,pos,ns,0.404951165,-0.0000645,0.000155097,-0.415706493,0.6779124,neg,ns,0.836581463,Gm14473,Gm14473_Intergenic_upstream,X,10911802,10911851,10911850,10911851,50,-,CTGTTACATTTCCCAGAATGGTTCCCAGTGCTGGAGATAATTCCTTTTCG,Distal Intergenic,20,10865077,10865633,557,2,Gm14473-201,-46218,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,668982,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25258,cg15292196,-0.00000128,0.00000194,-0.662252811,0.508301235,loss,ns,-0.00000356,0.00000329,-1.080855905,0.280601346,neg,ns,0.001159087,0.000965081,1.201025469,0.230658164,pos,ns,0.63703117,-0.0000199,0.0000332,-0.59986314,0.549035658,neg,ns,0.062726607,Cxxc4,Cxxc4_Exon,3,134240454,134240503,134240454,134240455,50,-,CGTCACAGACAGTGCGTTTCAAATTGCCAATCTGGCAGACTGCCCGCAGA,"Exon (Cxxc4-203/Cxxc4, exon 3 of 4)",3,134236484,134259620,23137,1,Cxxc4-204,3970,Cxxc4-204;Cxxc4-203;Cxxc4-202;Cxxc4-201;Cxxc4-205,Cxxc4;Cxxc4;Cxxc4;Cxxc4;Cxxc4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,18,20,319478,ENSMUSG00000044365,mapped to different genes,3,134240265,134240649,385,*,385,21,0.587012987,0.63362069,0.054545455,5.57E-11,CpGisland,TRUE,U3,Pr-B
20389,cg13249957,0.0000396,0.00000487,8.136342174,9.96E-15,gain,yes,0.00000895,0.00000828,1.080798087,0.280627029,pos,ns,0.009822846,0.002425333,4.050102771,0.0000647,pos,ns,4.188767625,-0.000214713,0.0000834,-2.574276682,0.01050899,neg,ns,0.139812381,Hoxc5,Hoxc5_Exon,15,103015341,103015390,103015389,103015390,50,+,AACAACTTGTGTCTCAATGAGAGACAGATCAAGATCTGGTTCCAGAACCG,"Exon (Hoxc5-202/Hoxc5, exon 2 of 2)",15,102967443,103015676,48234,1,Hoxc5-202,47898,Hoxc4-202;Hoxc5-202;Hoxc5-201;Hoxc6-202;Hoxc6-201,Hoxc4;Hoxc5;Hoxc5;Hoxc6;Hoxc6,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,72,134,15424,ENSMUSG00000022485,mapped to different genes,15,103015231,103015390,160,*,160,12,0.53125,1.081081081,0.075,5.15E-08,CpGisland,TRUE,U13,Hc-P
4302,cg16617352,0.00000342,0.0000038,0.898498952,0.369616935,gain,ns,0.00000698,0.00000646,1.080662581,0.280687227,pos,ns,0.005525042,0.001892207,2.9198927,0.003758169,pos,ns,2.425023748,-0.000185355,0.0000651,-2.848430329,0.004687263,neg,ns,0.916539373,Zfp800,Zfp800_Exon,6,28256436,28256485,28256436,28256437,50,+,CGAAAGCACTCAATTATTTGTTGAATACCAGATTTGGATGTCTGTAGTGG,"Exon (Zfp800-202/Zfp800, exon 3 of 6)",6,28239927,28261911,21985,2,Zfp800-202,5426,Zfp800-202;Zfp800-201;Zfp800-203;Zfp800-204;Zfp800-205,Zfp800;Zfp800;Zfp800;Zfp800;Zfp800,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,10,627049,ENSMUSG00000039841,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22843,cg11880748,0.0000283,0.00000496,5.712515037,2.61E-08,gain,yes,-0.0000091,0.00000842,-1.080528028,0.280747011,neg,ns,0.008867682,0.002466907,3.594656017,0.000377747,pos,ns,3.422799499,-0.0000762,0.0000848,-0.898236829,0.369756413,neg,ns,0.940958245,Meis2,Meis2_Intron,2,116019803,116019852,116019803,116019804,50,+,CGGCACCTAGCCTGTAACTGGAAGATTACCGAATTGATGGATCCTTAGTT,"Intron (Meis2-201/Meis2, intron 7 of 11)",2,115863064,116065047,201984,2,Meis2-201,45195,Meis2-201;Meis2-203;Meis2-205;Meis2-206;Meis2-204;Meis2-202;Meis2-216;Meis2-217;Meis2-213,Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,45,97,17536,ENSMUSG00000027210,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12889,cg06000231,-0.0000048,0.00000182,-2.633589129,0.008872532,loss,ns,0.00000334,0.0000031,1.080470525,0.280772563,pos,ns,0.000734426,0.00090686,0.8098558,0.418644261,pos,ns,0.378154858,-0.0000679,0.0000312,-2.178766905,0.030101893,neg,ns,0.962859432,Igf1r,Igf1r_Exon,7,68004203,68004252,68004203,68004204,50,-,CGGTGTCCAATAACTACATTGTGGGGAATAAGCCCCCAAAGGAATGTGGG,"Exon (Igf1r-201/Igf1r, exon 2 of 21)",7,67952827,68233668,280842,1,Igf1r-201,51376,Igf1r-201,Igf1r,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,9,16001,ENSMUSG00000005533,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13691,cg09023652,0.00000297,0.0000065,0.456259283,0.648523021,gain,ns,0.0000119,0.000011,1.080374763,0.280815119,pos,ns,-0.002637835,0.003235821,-0.815198151,0.415584751,neg,ns,0.381340397,0.0000923,0.00011128,0.829744837,0.407321554,pos,ns,0.812589617,Gabrb1,Gabrb1_Exon,5,72136734,72136783,72136782,72136783,50,+,CAAGTGGTCCCGAATGTTTTTCCCCATCACCTTTTCTCTTTTTAATGTCG,"Exon (Gabrb1-201/Gabrb1, exon 9 of 9)",5,71699932,72149037,449106,1,Gabrb1-201,436802,Gabrb1-201,Gabrb1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,4,14400,ENSMUSG00000029212,conserved gene and region,5,72136571,72136882,312,*,312,23,0.55448718,0.9663345,0.073717949,9.04E-15,CpGisland,TRUE,NA,NRS
14364,cg11803466,0.0000142,0.0000083,1.716630309,0.087045637,gain,ns,0.0000152,0.0000141,1.080300032,0.280848333,pos,ns,0.000986687,0.004129745,0.238922118,0.811323846,pos,ns,0.090805759,0.000044,0.000142022,0.310142959,0.756660641,pos,ns,0.049115183,Smad7,Smad7_Intron,18,75370713,75370762,75370761,75370762,50,-,CAGGCGGCCTCTTTTGTTTATCTGACAGCTAAATATCAAGGCAATCACCG,"Intron (Smad7-201/Smad7, intron 1 of 3)",18,75367529,75395935,28407,1,Smad7-201,3184,Smad7-201;Smad7-202;Smad7-205;Smad7-204;Smad7-203,Smad7;Smad7;Smad7;Smad7;Smad7,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,19,17131,ENSMUSG00000025880,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
17199,cg00896209,-0.00000644,0.0000043,-1.498744526,0.134957532,loss,ns,0.00000789,0.0000073,1.080164841,0.280908423,pos,ns,-0.001057377,0.002139483,-0.49422092,0.621500187,neg,ns,0.206558736,-0.000177949,0.0000736,-2.418553508,0.016158213,neg,ns,0.922236688,Clk2,Clk2_Exon,3,89169680,89169729,89169680,89169681,50,-,CGGGGACTGGCTACAAGAGCGATGTACAAGCCAAATCGTAACAATCCTAT,"Exon (Clk2-202/Clk2, exon 4 of 13)",3,89164795,89176921,12127,1,Clk2-202,4885,Clk2-202;Clk2-210;Clk2-201;Clk2-209;Clk2-207;Clk2-203;Clk2-204;Clk2-206;Clk2-211;Clk2-205,Clk2;Clk2;Clk2;Clk2;Clk2;Clk2;Clk2;Clk2;Clk2;Clk2,0;4863;0;0;0;0;0;0;0;-4226,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,10,12748,ENSMUSG00000068917,conserved gene and region,3,89169381,89169717,337,*,337,23,0.637982196,0.717685185,0.068249258,4.95E-14,CpGisland,TRUE,U10,Tr-S
16043,cg16190348,0.0000484,0.0000076,6.363581756,7.08E-10,gain,yes,0.0000139,0.0000129,1.080124353,0.280926422,pos,ns,0.012174941,0.003783666,3.217763236,0.001428623,pos,ns,2.845082255,-0.000266958,0.00013012,-2.051630052,0.041045499,neg,ns,0.523832883,Bnc2,Bnc2_Intron,4,84282400,84282449,84282448,84282449,50,+,CAGAATTAGACTTCTTTTCTCAATTCACAGTGAATTATGCTGCCTACACG,"Intron (Bnc2-201/Bnc2, intron 7 of 7)",4,84275095,84675034,399940,2,Bnc2-201,392585,Bnc2-201;Bnc2-202;Bnc2-214;Bnc2-218;Bnc2-215;Bnc2-222;Bnc2-216;Bnc2-213;Bnc2-219,Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,91,242509,ENSMUSG00000028487,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12433,cg23194993,-0.0000423,0.0000105,-4.03228622,0.0000696,loss,ns,0.0000192,0.0000178,1.080101209,0.28093671,pos,ns,-0.007181703,0.005220619,-1.375642051,0.16992561,neg,ns,0.769741162,-0.0001915,0.000179537,-1.066635898,0.286966265,neg,ns,0.673691124,Slitrk4,Slitrk4_Exon,X,64272617,64272666,64272617,64272618,50,-,CGTTCAATATACTTGATTAAATTGTAGTCAGCCTGGAGATACTCCAAGTT,"Exon (Slitrk4-201/Slitrk4, exon 3 of 3)",20,64264885,64276996,12112,2,Slitrk4-201,4330,Slitrk4-201;Slitrk4-202;Slitrk4-203,Slitrk4;Slitrk4;Slitrk4,0;0;3156,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,245446,ENSMUSG00000046699,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14401,cg18333000,0.00000981,0.00000325,3.019618607,0.002741295,gain,ns,0.00000596,0.00000552,1.07998521,0.280988281,pos,ns,0.003745924,0.001616169,2.317780807,0.02111204,pos,ns,1.67546981,-0.0000258,0.0000556,-0.463862795,0.643071595,neg,ns,0.129467783,Asic4,Asic4_Intron,1,75457970,75458019,75457970,75457971,50,-,CGGGATGATTAAGGGGAAATGGAGGATTGATTTAGGAGGAAAGATTAAAG,"Intron (Asic4-202/Asic4, intron 1 of 8)",1,75450436,75474340,23905,1,Asic4-202,7534,Asic4-202;Asic4-201,Asic4;Asic4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,11,241118,ENSMUSG00000033007,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
6680,cg22820182,0.000015,0.0000222,0.678109675,0.498207993,gain,ns,-0.0000407,0.0000377,-1.079921643,0.281016544,neg,ns,0.076419947,0.011044813,6.919080158,2.61E-11,pos,yes,10.5829133,-0.00231816,0.00037983,-6.103148724,3.10E-09,neg,yes,0.473273755,Uri1,Uri1_Intron,7,37998180,37998229,37998228,37998229,50,-,CAAACCATAAGAGCAGAATGTTCATTAACCTCTACATGATAATCCTTTCG,"Intron (Uri1-201/Uri1, intron 1 of 10)",7,37959992,38019542,59551,2,Uri1-201,21313,Uri1-201;Uri1-206;Uri1-207;Uri1-205,Uri1;Uri1;Uri1;Uri1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,27,19777,ENSMUSG00000030421,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2860,cg11834537,0.0000203,0.0000126,1.612882707,0.107787491,gain,ns,0.000023,0.0000213,1.079879258,0.281035391,pos,ns,0.014724113,0.006252874,2.354775275,0.019157134,pos,ns,1.717669455,-0.00063128,0.000215036,-2.935698813,0.003576863,neg,ns,0.265948141,Zfp503,Zfp503_Promoter,14,21994466,21994515,21994514,21994515,50,-,GGTGTCAGGGCGAAAAACTCTCTTTATTGTCTGCGTGATGGATGGGCCCG,Promoter (4-5kb),14,21983959,21989601,5643,2,Zfp503-201,-4914,Zfp503-201,Zfp503,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,18,27,218820,ENSMUSG00000039081,mapped to different genes,14,21994122,21994568,447,*,447,26,0.579418345,0.69759904,0.058165548,4.29E-14,CpGisland,TRUE,U3,Pr-B
1264,cg27415050,-0.00000267,0.00000106,-2.512402894,0.012498746,loss,ns,-0.00000195,0.0000018,-1.079617919,0.281151613,neg,ns,0.001118551,0.000528492,2.116494181,0.035099422,pos,ns,1.454700041,-0.0000571,0.0000182,-3.143988968,0.001827992,neg,ns,0.971926416,Riok3,Riok3_threeUTR,18,12148831,12148880,12148879,12148880,50,-,GAATGTGCCATCAAGGTATTTAAAACAACCCTTAATGAATTTAAGAATCG,3' UTR,18,12128741,12157387,28647,1,Riok3-201,20090,Riok3-201;Riok3-204;Riok3-212;Riok3-205;Riok3-216;Riok3-214;Riok3-217;Riok3-206;Riok3-203;Riok3-210;Riok3-202,Riok3;Riok3;Riok3;Riok3;Riok3;Riok3;Riok3;Riok3;Riok3;Riok3;Riok3,0;0;0;0;0;0;0;0;-534;-3793;-3856,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,4,66878,ENSMUSG00000024404,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8027,cg00571722,0.0000134,0.0000128,1.045812014,0.296462597,gain,ns,0.0000235,0.0000218,1.07945372,0.281224653,pos,ns,-0.002343905,0.006386545,-0.367006797,0.713864344,neg,ns,0.14638431,0.000114441,0.000219633,0.521054037,0.602701126,pos,ns,0.37644439,Pax2,Pax2_Intergenic_upstream,19,44696738,44696787,44696738,44696739,50,-,CGATTATGAATGGGTTAGTCACAGGTGGAGTTAAAGGCCTTCAGAGGGAT,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-59307,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
26181,cg14375924,0.0000116,0.00000602,1.933093152,0.054135192,gain,ns,0.000011,0.0000102,1.079416984,0.281240995,pos,ns,0.01531966,0.002995304,5.114559312,0.000000552,pos,ns,6.258113906,-0.000392758,0.000103008,-3.81288179,0.000165716,neg,ns,0.862639159,Sox5,Sox5_Intron,6,144251673,144251722,144251673,144251674,50,-,CGGTGGGCTCTTTTCACAAAAAAGCCAGCCTCAAAGCTGGGGCTCTAACT,"Intron (Sox5-209/Sox5, intron 4 of 13)",6,143843739,144781977,938239,2,Sox5-209,530255,Sox5-209;Sox5-212,Sox5;Sox5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,71,20678,ENSMUSG00000041540,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12375,cg05010579,-0.000013,0.0000044,-2.948436523,0.003436611,loss,ns,0.00000806,0.00000747,1.079340045,0.281275225,pos,ns,0.003293231,0.002188144,1.505034104,0.133333485,pos,ns,0.875060769,-0.000163453,0.0000753,-2.172136502,0.03060301,neg,ns,0.929952356,Fign,Fign_Intron,2,64077865,64077914,64077865,64077866,50,-,CGAAACCACTTAAACTATAGTTGTCTGTATGAATCAGTAATTTTCATGTT,"Intron (Fign-203/Fign, intron 2 of 2)",2,63971507,64098012,126506,2,Fign-203,20098,Fign-203;Fign-201;Fign-202;Fign-204,Fign;Fign;Fign;Fign,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,84,60344,ENSMUSG00000075324,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18254,cg21897795,0.0000179,0.00000484,3.699541217,0.000255467,gain,ns,0.00000888,0.00000823,1.079319785,0.28128424,pos,ns,0.002400635,0.002410099,0.996073324,0.319991374,pos,ns,0.494861729,-0.0000167,0.0000829,-0.201466631,0.84046585,neg,ns,0.098110172,Ap3b1,Ap3b1_Intergenic_downstream,13,94596590,94596639,94596638,94596639,50,+,TTAGGGCTTCAAGCGCAGAGCCCAAGGCTATCAGCTAAGCAGAAACAACG,Distal Intergenic,13,94542303,94547867,5565,1,Ap3b1-202,54287,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,33,55,11774,ENSMUSG00000021686,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
16792,cg05253023,0.0000182,0.0000058,3.143216229,0.001832674,gain,ns,-0.0000106,0.00000985,-1.079315129,0.281286311,neg,ns,-0.007631151,0.002886451,-2.643783866,0.008615517,neg,ns,2.064718652,0.000139643,0.0000993,1.406771888,0.160496753,pos,ns,0.895507463,Lrba,Lrba_Exon,3,86532151,86532200,86532199,86532200,50,-,GCGTAACCCTCTAGGATCGACACATCCTGAAGCGACACTAAAAACAGCCG,"Exon (Lrba-202/Lrba, exon 38 of 51)",3,86224680,86746712,522033,1,Lrba-202,307471,Lrba-202;Lrba-204;Lrba-201;Lrba-208,Lrba;Lrba;Lrba;Lrba,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,17,45,80877,ENSMUSG00000028080,conserved gene but different region,3,86532037,86532200,164,*,164,13,0.506097561,1.239534884,0.079268293,6.06E-09,CpGisland,TRUE,U15,NS
20774,cg02075352,-0.00000777,0.00000255,-3.047774093,0.002503869,loss,ns,0.00000468,0.00000433,1.079186573,0.281343513,pos,ns,0.0010793,0.001269636,0.850085791,0.395933455,pos,ns,0.4023778,-0.0000832,0.0000437,-1.90462948,0.057753657,neg,ns,0.947620267,Wt1,Wt1_Exon,2,105169922,105169971,105169970,105169971,50,+,TTAGGTGTGAAACCATTCCAGTGTAAAACTTGTCAGCGAAAGTTCTCCCG,"Exon (Wt1-205/Wt1, exon 9 of 10)",2,105126529,105173612,47084,1,Wt1-205,43393,Wt1-205;Wt1-207;Wt1-203;Wt1-204;Wt1-201;Wt1-202;Wt1-208,Wt1;Wt1;Wt1;Wt1;Wt1;Wt1;Wt1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,6,22431,ENSMUSG00000016458,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1065,cg20131482,0.0000118,0.00000504,2.341579548,0.019835394,gain,ns,0.00000925,0.00000857,1.079178602,0.28134706,pos,ns,-0.002006863,0.002510666,-0.799334717,0.424708381,neg,ns,0.371909169,0.0000931,0.0000863,1.077806353,0.281958155,pos,ns,0.913867564,H2al1j,H2al1j_Intergenic_downstream,X,11420915,11420964,11420915,11420916,50,+,CGACATGATGCCTCCGAGTAATGTAATTTATATTTCATGCACAATTGAAG,Distal Intergenic,20,11327822,11328151,330,1,H2al1j-201,93093,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,236663,ENSMUSG00000069038,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23973,cg09773464,-0.0000011,0.00000418,-0.264140183,0.791847414,loss,ns,-0.00000766,0.0000071,-1.079051097,0.281403803,neg,ns,-0.001290817,0.002081013,-0.620282958,0.535527222,neg,ns,0.271218448,-0.0000317,0.0000716,-0.44243641,0.658481966,neg,ns,0.906815572,Frmd5,Frmd5_Exon,2,121548761,121548810,121548761,121548762,50,-,CGGATATCACGGAAAAAGGCAATGTCAAGGTCAGACTCGGTAAGGATGAT,"Exon (Frmd5-203/Frmd5, exon 14 of 14)",2,121545529,121586433,40905,2,Frmd5-206,37623,Frmd5-206;Frmd5-202;Frmd5-207;Frmd5-205;Frmd5-203;Frmd5-212;Frmd5-204;Frmd5-201;Frmd5-213;Frmd5-211;Wdr76-203,Frmd5;Frmd5;Frmd5;Frmd5;Frmd5;Frmd5;Frmd5;Frmd5;Frmd5;Frmd5;Wdr76,0;0;0;0;0;0;0;0;0;9747;41978,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,4,228564,ENSMUSG00000027238,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23672,cg24470719,0.0000016,0.00000256,0.624187194,0.532963725,gain,ns,-0.00000469,0.00000435,-1.078845478,0.281495325,neg,ns,-0.001410679,0.001274286,-1.107034556,0.269137254,neg,ns,0.570026182,0.0000554,0.0000438,1.264266491,0.207084128,pos,ns,0.897868343,Ptbp2,Ptbp2_Intron,3,119724672,119724721,119724672,119724673,50,-,CGTAAGACAAGAAGAGAGAAGAGTCGAGGAAGAGCGGAGATGAACAGATC,"Intron (Ptbp2-201/Ptbp2, intron 9 of 13)",3,119718742,119783388,64647,2,Ptbp2-201,58667,Ptbp2-201;Ptbp2-213;Ptbp2-208;Ptbp2-206;Ptbp2-204;Ptbp2-211;Ptbp2-202,Ptbp2;Ptbp2;Ptbp2;Ptbp2;Ptbp2;Ptbp2;Ptbp2,0;0;0;0;0;-285;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,13,56195,ENSMUSG00000028134,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24577,cg13016062,0.000000836,0.000000609,1.372204876,0.170991752,gain,ns,0.00000112,0.00000104,1.078828195,0.281503019,pos,ns,0.000276266,0.000303289,0.91090042,0.363055587,pos,ns,0.440026876,-0.0000131,0.0000104,-1.259844518,0.208673077,neg,ns,0.007665432,Maz,Maz_Exon,7,127025355,127025404,127025403,127025404,50,-,CCGTCATGTGAGCGCACGTGGTAGCTCATGCGGTCCTTGCGCTTGAAGCG,"Exon (Maz-203/Maz, exon 2 of 6)",7,127022130,127026526,4397,2,Maz-203,1122,Gm42742-203;Gm42742-204;Gm42742-202;Kif22-202;Kif22-201;Kif22-205;Kif22-206;Maz-203;Maz-201;Maz-204;Maz-202;Maz-206;Maz-205;Prrt2-201;Prrt2-202;Prrt2-205;Prrt2-206;Prrt2-207,Gm42742;Gm42742;Gm42742;Kif22;Kif22;Kif22;Kif22;Maz;Maz;Maz;Maz;Maz;Maz;Prrt2;Prrt2;Prrt2;Prrt2;Prrt2,0;0;0;3553;17067;2712;7300;0;0;0;0;0;0;0;0;-4399;-4218;-5000,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,16,17,17188,ENSMUSG00000030678,conserved gene and region,7,127025353,127025621,269,*,269,30,0.669144981,1.002359955,0.111524164,1.16E-24,CpGisland,TRUE,U1,Pr-A
7265,cg19549330,-0.00000277,0.00000142,-1.949514486,0.052135479,loss,ns,0.0000026,0.00000241,1.078710664,0.281555342,pos,ns,0.001528794,0.000707258,2.16157823,0.031415849,pos,ns,1.502851196,-0.0000506,0.0000243,-2.07833081,0.038501297,neg,ns,0.96226103,Oxr1,Oxr1_Exon,15,41848679,41848728,41848727,41848728,50,-,GTGGCTGAGTATCACCGCAGGATCGATGCTCTAAATACTGAAGAACTGCG,"Exon (Oxr1-204/Oxr1, exon 12 of 17)",15,41447482,41861045,413564,1,Oxr1-203,401197,Oxr1-203;Oxr1-204;Oxr1-207;Oxr1-214;Oxr1-206;Oxr1-201;Oxr1-202;Oxr1-205;Oxr1-212;Oxr1-213;Oxr1-216;Oxr1-211,Oxr1;Oxr1;Oxr1;Oxr1;Oxr1;Oxr1;Oxr1;Oxr1;Oxr1;Oxr1;Oxr1;Oxr1,0;0;0;0;0;0;0;0;0;0;0;-1496,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,170719,ENSMUSG00000022307,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21963,cg01065375,0.0000544,0.0000185,2.947566764,0.003446025,gain,ns,-0.0000338,0.0000314,-1.078693202,0.281563117,neg,ns,0.024851152,0.009193054,2.703253171,0.007245165,pos,ns,2.139951702,-0.000852821,0.000316148,-2.697534329,0.007367831,neg,ns,0.439137198,Pde4d,Pde4d_Intron,13,109837597,109837646,109837597,109837598,50,-,CGACAGAAGTACGTGCCAAGAATAATTGGCTTCTGTCTTGCGGAACAGCT,"Intron (Pde4d-209/Pde4d, intron 7 of 16)",13,108654177,109951474,1297298,1,Pde4d-209,1183420,Pde4d-209;Pde4d-220;Pde4d-208;Pde4d-218;Pde4d-205;Pde4d-202;Pde4d-213;Pde4d-201,Pde4d;Pde4d;Pde4d;Pde4d;Pde4d;Pde4d;Pde4d;Pde4d,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,7,238871,ENSMUSG00000021699,conserved gene and region,13,109837580,109837638,59,*,59,7,0.508474576,1.912037037,0.118644068,0.00000415,CpGisland,TRUE,NA,NRS
20290,cg06163441,0.00000683,0.00000181,3.776890037,0.000190349,gain,ns,-0.00000332,0.00000307,-1.078664098,0.281576075,neg,ns,0.001333636,0.000900499,1.480996617,0.139623129,pos,ns,0.855042632,-0.0000322,0.000031,-1.041153294,0.298615713,neg,ns,0.016304771,Hoxc5,Hoxc5_Exon,15,102991012,102991061,102991012,102991013,50,+,CGCTTAGCTGCCACGGAGACGCCTCCAAATTCTATGGCTACGAGGCGCTC,"Exon (Hoxc8-201/Hoxc8, exon 1 of 2)",15,102967443,103015676,48234,1,Hoxc5-202,23569,Hoxc5-202;Hoxc8-201;Hoxc8-202,Hoxc5;Hoxc8;Hoxc8,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,72,134,15424,ENSMUSG00000022485,conserved gene and region,15,102990435,102991303,869,*,869,73,0.63406214,0.844205792,0.084004603,1.12E-49,CpGisland,TRUE,U13,Hc-P
20509,cg09635425,9.73E-08,0.00000171,0.056929599,0.954637952,gain,ns,0.00000313,0.0000029,1.078613392,0.281598652,pos,ns,0.000935385,0.000850501,1.099804519,0.272270633,pos,ns,0.564999199,-0.0000396,0.0000292,-1.355105921,0.176370412,neg,ns,0.962259863,Mycbp2,Mycbp2_threeUTR,14,103173766,103173815,103173814,103173815,50,+,CACAAATTTAAGCCAACTTGCCATCTTCATGTCGGAGGTACTGGTTTCCG,3' UTR,14,103113411,103346418,233008,2,Mycbp2-202,172603,Mycbp2-202;Mycbp2-201;Mycbp2-209;Mycbp2-204,Mycbp2;Mycbp2;Mycbp2;Mycbp2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,6,105689,ENSMUSG00000033004,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5143,cg15711337,-0.0000155,0.0000141,-1.097386778,0.273324018,loss,ns,-0.0000259,0.000024,-1.078559843,0.281622496,neg,ns,-0.015107661,0.007036252,-2.147117619,0.03255927,neg,ns,1.487325345,-0.000389182,0.000241976,-1.608348462,0.1087768,neg,ns,0.233296539,Bach2,Bach2_Intron,4,32531587,32531636,32531635,32531636,50,-,GTGATCCCAGGGGCAGCAGCTGCTGATGCAAGCTGAAAATAGATCCAGCG,"Intron (Bach2-202/Bach2, intron 4 of 6)",4,32238804,32586104,347301,1,Bach2-202,292783,Bach2-202;Bach2-201;Bach2-207,Bach2;Bach2;Bach2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,14,12014,ENSMUSG00000040270,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4690,cg21219688,-0.0000103,0.00000298,-3.443723234,0.000652704,loss,ns,-0.00000546,0.00000506,-1.078414276,0.281687321,neg,ns,-0.001221734,0.001482774,-0.823951185,0.410600758,neg,ns,0.386580253,0.000000441,0.000051,0.008653195,0.993101401,pos,ns,0.92270105,Sptbn1,Sptbn1_Exon,11,30109036,30109085,30109036,30109037,50,+,CGTCTGCTATTAAAGTTTTTGTAGTTTTGGTAGGTTTGAGAGCGGTAACT,"Exon (Sptbn1-203/Sptbn1, exon 31 of 31)",11,30099395,30268169,168775,2,Sptbn1-201,159084,Sptbn1-201;Sptbn1-202;Sptbn1-206;Sptbn1-203;Sptbn1-205;Sptbn1-204,Sptbn1;Sptbn1;Sptbn1;Sptbn1;Sptbn1;Sptbn1,0;0;-3426;0;2274;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,20742,ENSMUSG00000020315,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5660,cg17324694,0.000119137,0.0000168,7.071903821,1.02E-11,gain,yes,-0.0000309,0.0000286,-1.078401106,0.281693186,neg,ns,0.023259563,0.008384715,2.774043236,0.005872129,pos,ns,2.231204397,-0.000743609,0.00028835,-2.57884406,0.010373998,neg,ns,0.314258801,Mapkap1,Mapkap1_Intron,2,34527003,34527052,34527003,34527004,50,-,CGGAATGTGAATGTCTTTGCAGTTATATAGAGTAGTAAATAATTGAGTTT,"Intron (Mapkap1-204/Mapkap1, intron 5 of 10)",2,34406862,34623475,216614,1,Mapkap1-204,120141,Mapkap1-204;Mapkap1-202;Mapkap1-201;Mapkap1-209;Mapkap1-203;Mapkap1-207,Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,59,227743,ENSMUSG00000038696,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
16338,cg18342041,0.0000491,0.0000044,11.15931558,1.56E-24,gain,yes,-0.00000806,0.00000747,-1.078387948,0.281699047,neg,ns,0.003984958,0.00218935,1.820155457,0.069699539,pos,ns,1.156770096,-0.0000451,0.0000753,-0.599652304,0.549176009,neg,ns,0.091909178,Rfx4,Rfx4_fiveUTR,10,84756109,84756158,84756157,84756158,50,+,GCTCCCATCGGGGCTCCTATAAAATGATGCTTTTTCCCATGAAACATCCG,Promoter (<=1kb),10,84756062,84906144,150083,1,Rfx4-202,47,Rfx4-202,Rfx4,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,7,13,71137,ENSMUSG00000020037,mapped to different genes,10,84756044,84756276,233,*,233,17,0.557939914,1.02510352,0.072961373,5.60E-11,CpGisland,TRUE,U13,Hc-P
1799,cg02197409,0.0000814,0.0000133,6.142190999,2.49E-09,gain,yes,-0.0000243,0.0000225,-1.078317139,0.281730584,neg,ns,0.020801321,0.006594873,3.154165433,0.001767359,pos,ns,2.752675111,-0.000635908,0.000226797,-2.803861503,0.00536792,neg,ns,0.314759961,Foxp2,Foxp2_Intron,6,15370508,15370557,15370508,15370509,50,+,CGTCAGGATTAGTCAAGCTAGGCGATCAAGACTGCTAATGCATAATGATT,"Intron (Foxp2-207/Foxp2, intron 5 of 18)",6,14901349,15441977,540629,1,Foxp2-207,469159,Foxp2-207;Foxp2-213;Foxp2-205;Foxp2-204;Foxp2-201;Foxp2-210;Foxp2-214;Foxp2-212;Foxp2-209;Foxp2-202,Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,38,65,114142,ENSMUSG00000029563,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16958,cg22438797,0.0000663,0.0000106,6.223271869,1.58E-09,gain,yes,0.0000195,0.0000181,1.078243636,0.281763324,pos,ns,0.025440359,0.005298855,4.801105344,0.00000246,pos,ns,5.609246459,-0.000364734,0.000182227,-2.001532087,0.046206294,neg,ns,0.37048238,Zfp423,Zfp423_threeUTR,8,87662389,87662438,87662437,87662438,50,+,ACACTTTGATTGGATGTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCG,3' UTR,8,87661810,87804439,142630,2,Zfp423-203,142001,Zfp423-203;Zfp423-202;Zfp423-201,Zfp423;Zfp423;Zfp423,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,53,94187,ENSMUSG00000045333,conserved gene and region,8,87662428,87662690,263,*,263,25,0.619771863,0.998329791,0.095057034,8.88E-19,CpGisland,TRUE,NA,NRS
12518,cg09909000,0.000035,0.00000329,10.62473738,1.09E-22,gain,yes,-0.00000603,0.00000559,-1.078198217,0.281783556,neg,ns,0.001432558,0.001638986,0.874051476,0.382766827,pos,ns,0.417065708,0.0000445,0.0000564,0.789545537,0.4303967,pos,ns,0.839617833,Hmbox1,Hmbox1_Exon,14,64825651,64825700,64825699,64825700,50,+,CTGGACTCTGCACATCTATCCCATGACTCTCCAGGATTGCTGCTTCTTCG,"Exon (Hmbox1-201/Hmbox1, exon 9 of 11)",14,64811600,64949850,138251,2,Hmbox1-201,124150,Hmbox1-201;Hmbox1-206;Hmbox1-202;Hmbox1-205;Hmbox1-209;Hmbox1-210;Hmbox1-203;Hmbox1-207;Hmbox1-204,Hmbox1;Hmbox1;Hmbox1;Hmbox1;Hmbox1;Hmbox1;Hmbox1;Hmbox1;Hmbox1,0;-3355;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,8,219150,ENSMUSG00000021972,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18305,cg07099833,0.000107888,0.0000118,9.108133929,1.06E-17,gain,yes,-0.0000217,0.0000201,-1.078132522,0.281812822,neg,ns,0.016570348,0.005895487,2.810683244,0.005258236,pos,ns,2.279159894,-0.000284171,0.000202745,-1.401613211,0.16203118,neg,ns,0.175926102,Gm48316,Gm48316_Intergenic_upstream,13,94707026,94707075,94707074,94707075,50,+,GACAACCATTGACACTGGATGGATGGGGCTAATCTGGCGCAGAACTGGCG,Distal Intergenic,13,94752270,94752593,324,1,Gm48316-201,-45195,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,36,42,,NA,mapped to different genes,13,94707063,94707220,158,*,158,11,0.5,1.114102564,0.069620253,0.000000471,CpGisland,TRUE,U13,Hc-P
5273,cg26924005,-0.000000691,0.00000431,-0.160130384,0.872882657,loss,ns,0.0000079,0.00000733,1.07800657,0.281868937,pos,ns,0.003426395,0.002146394,1.596350016,0.111429532,pos,ns,0.952999693,-0.00014885,0.0000738,-2.016540961,0.044605476,neg,ns,0.928047177,Exoc4,Exoc4_Intron,6,33283741,33283790,33283789,33283790,50,-,GTCCTTTGTATTCCACTCACATTAATTGAAGTAATTTTGCCAGTGAAGCG,"Intron (Exoc4-201/Exoc4, intron 3 of 17)",6,33249085,33973979,724895,1,Exoc4-201,34656,Exoc4-201;Exoc4-206;Exoc4-202;Exoc4-204;Exoc4-203;Exoc4-207,Exoc4;Exoc4;Exoc4;Exoc4;Exoc4;Exoc4,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,7,20336,ENSMUSG00000029763,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21036,cg21692907,-0.00000217,0.00000627,-0.346457999,0.729233584,loss,ns,0.0000115,0.0000107,1.077984144,0.281878929,pos,ns,0.002468529,0.003120602,0.791042507,0.42952397,pos,ns,0.367012595,-0.000147654,0.000107317,-1.375866049,0.169856305,neg,ns,0.919906427,Dcdc5,Dcdc5_Intron,2,106133504,106133553,106133504,106133505,50,-,CGATAGACAGAGCCAAGGAAAAGGTCACACAGAATCAGCAGCCAACTAAA,"Intron (Dcdc5-203/Dcdc5, intron 8 of 8)",2,106003336,106157718,154383,1,Dcdc5-203,130168,Dcdc5-203;Dcdc5-202,Dcdc5;Dcdc5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,22,329482,ENSMUSG00000074981,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
884,cg14788180,-0.0000172,0.00000629,-2.738042285,0.006537829,loss,ns,-0.0000115,0.0000107,-1.077967134,0.281886508,neg,ns,-0.004012614,0.003128192,-1.282726034,0.200546326,neg,ns,0.69778529,-0.0000791,0.000107578,-0.735731036,0.462450695,neg,ns,0.817655805,Gm48750,Gm48750_Intron,10,9386614,9386663,9386662,9386663,50,-,ACAGAGGACCAATATGTCACCAACACAGGACTGGAAAGGTCACAAAAACG,"Intron (Gm48749-201/Gm48749-201, intron 2 of 2)",10,9356155,9356532,378,1,Gm48750-201,30508,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,3,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
112,cg18843288,-0.0000276,0.00000852,-3.245533922,0.001300485,loss,ns,0.0000156,0.0000145,1.077685487,0.282012023,pos,ns,-0.007360729,0.004239448,-1.736247025,0.083513669,neg,ns,1.078242434,0.000145731,0.000145794,0.99956446,0.318300911,pos,ns,0.86959382,Grk2,Grk2_threeUTR,19,4286019,4286068,4286067,4286068,50,+,AAAAACGCATAGTCTCATTTTTCACTCTTTAAAATCACATTCAAAAATCG,3' UTR,19,4286001,4305955,19955,2,Grk2-201,19887,Ankrd13d-201;Ankrd13d-202;Ankrd13d-205;Ankrd13d-204;Grk2-201;Grk2-203;Grk2-202;Grk2-209;Grk2-204;Grk2-207;Grk2-205;Grk2-208,Ankrd13d;Ankrd13d;Ankrd13d;Ankrd13d;Grk2;Grk2;Grk2;Grk2;Grk2;Grk2;Grk2;Grk2,-2884;-2882;-2882;-2986;0;0;0;0;3335;3326;4415;5743,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,5,110355,ENSMUSG00000024858,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3580,cg17019032,-0.00000732,0.0000108,-0.676936377,0.498951135,loss,ns,0.0000198,0.0000184,1.077511933,0.282089384,pos,ns,0.005636363,0.005384751,1.046726774,0.296041053,pos,ns,0.52864806,-0.000257682,0.000185181,-1.391513053,0.165067609,neg,ns,0.760749246,Smarcd3,Smarcd3_Exon,5,24596008,24596057,24596056,24596057,50,-,GATCCAGTTTCCTCTCAAATGCCAAGAGGTCCATGTAAGCCTGGGACTCG,"Exon (Smarcd3-205/Smarcd3, exon 4 of 12)",5,24590818,24601976,11159,2,Smarcd3-205,5919,Chpf2-201;Chpf2-202;Chpf2-203;Chpf2-205;Smarcd3-205;Smarcd3-201;Smarcd3-208;Smarcd3-207;Smarcd3-203;Smarcd3-206;Smarcd3-204;Smarcd3-202,Chpf2;Chpf2;Chpf2;Chpf2;Smarcd3;Smarcd3;Smarcd3;Smarcd3;Smarcd3;Smarcd3;Smarcd3;Smarcd3,0;0;0;2521;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,66993,ENSMUSG00000028949,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
312,cg04504730,0.000000648,0.0000062,0.10449821,0.916841565,gain,ns,0.0000114,0.0000105,1.077467741,0.282109085,pos,ns,0.000488007,0.00308794,0.158036272,0.87453111,pos,ns,0.058224737,-0.0000139,0.000106194,-0.130620545,0.896160211,neg,ns,0.811282702,Klhl29,Klhl29_Exon,12,5090916,5090965,5090964,5090965,50,-,CACCTGAGAGGTAGATGTTGTCCCCTGCACTCACTACACTGAAGAACTCG,"Exon (Klhl29-201/Klhl29, exon 10 of 14)",12,5077472,5375682,298211,2,Klhl29-201,284717,Klhl29-201;Klhl29-202,Klhl29;Klhl29,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,23,208439,ENSMUSG00000020627,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24055,cg06944193,-0.0000033,0.00000166,-1.986758629,0.047829211,loss,ns,-0.00000304,0.00000283,-1.07738274,0.282146982,neg,ns,-0.000374034,0.000827778,-0.451853677,0.651690379,neg,ns,0.185958691,0.00000634,0.0000285,0.222621241,0.823976908,pos,ns,0.958519475,Duox1,Duox1_Exon,2,122328851,122328900,122328851,122328852,50,+,CGCACTCTGCTGCTCAAGATCCCCAAGGAGTATGACCTGGTATGGCTCAG,"Exon (Duox1-201/Duox1, exon 16 of 33)",2,122315672,122347972,32301,1,Duox1-201,13179,Duox1-201,Duox1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,99439,ENSMUSG00000033268,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4139,cg07037105,0.0000253,0.00000694,3.64833453,0.000309569,gain,ns,-0.0000127,0.0000118,-1.077379043,0.28214863,neg,ns,-0.000561645,0.003455431,-0.162539896,0.870986611,neg,ns,0.059988521,0.000274469,0.000118832,2.309725281,0.021560172,pos,ns,0.74657245,Zfp703,Zfp703_Intergenic_upstream,8,26961371,26961420,26961419,26961420,50,+,CCCTGACCCTGAGCCGTCAAGAAGGAACAGCCAGATTAATGGGGTGGGCG,Distal Intergenic,8,26977325,26978672,1348,1,Zfp703-204,-15905,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,11,353310,ENSMUSG00000085795,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
18994,cg23758146,-0.000026,0.0000107,-2.427981756,0.015752011,loss,ns,0.0000196,0.0000182,1.077374059,0.282150853,pos,ns,0.008020376,0.005335264,1.503276267,0.133785842,pos,ns,0.873589842,-0.000254189,0.000183479,-1.385379758,0.166932363,neg,ns,0.681948754,Asb8,Asb8_Exon,15,98142718,98142767,98142718,98142719,50,+,CGCTCGGAGAGAGAGTATTTGCTCTGAATGCTCTGCATAATATACCACAT,"Exon (Asb8-204/Asb8, exon 2 of 4)",15,98134637,98165625,30989,2,Asb8-204,22858,Asb8-204;Asb8-201;Asb8-202;Asb8-203,Asb8;Asb8;Asb8;Asb8,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,78541,ENSMUSG00000048175,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9153,cg02416504,0.000000114,0.0000016,0.07115649,0.943319093,gain,ns,0.00000293,0.00000272,1.07730404,0.282182072,pos,ns,0.002144085,0.000797176,2.689601033,0.007541096,pos,ns,2.122565517,-0.0000663,0.0000274,-2.419011961,0.016138249,neg,ns,0.96290145,Gm4791,Gm4791_Intron,9,47250222,47250271,47250222,47250223,50,-,CGCCTTTGGTAATAAATATTGACGTTCATTAAGACAAAGCCAGAATTCAA,"Intron (Gm31816-206/Gm31816-206, intron 3 of 3)",9,46998741,47003860,5120,1,Gm4791-201,251530,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,18,215467,ENSMUSG00000094893,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21261,cg19179138,0.0000389,0.0000147,2.654753909,0.008346443,gain,ns,0.0000268,0.0000249,1.077291711,0.28218757,pos,ns,0.067278755,0.007293349,9.224672398,4.54E-18,pos,yes,17.34322698,-0.001850459,0.000250818,-7.377705393,1.49E-12,neg,yes,0.581326693,Ssbp3,Ssbp3_Intron,4,107016181,107016230,107016229,107016230,50,-,GTAACTCTCACTGATGAAATGGAAAGTTGAACATAAATCAATGTCTGCCG,"Intron (Ssbp3-216/Ssbp3, intron 5 of 8)",4,106910701,107031069,120369,1,Ssbp3-216,105480,Ssbp3-216;Ssbp3-201;Ssbp3-215;Ssbp3-202;Ssbp3-203;Ssbp3-213;Ssbp3-214;Ssbp3-211;Ssbp3-212;Ssbp3-204;Ssbp3-206,Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,18,72475,ENSMUSG00000061887,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12355,cg26496413,0.00000112,0.000000984,1.138933193,0.255610364,gain,ns,0.0000018,0.00000167,1.077257316,0.282202907,pos,ns,0.000891076,0.000489887,1.818942181,0.069884949,pos,ns,1.15561635,-0.000042,0.0000168,-2.49141772,0.013246051,neg,ns,0.013093256,Smad6,Smad6_Exon,9,64020975,64021024,64020975,64020976,50,-,CGACTTCGCCAAAGTCGCCGCACCAGCCCCGAGCGTTTGGACCTGAACAT,"Exon (Smad6-201/Smad6, exon 1 of 4)",9,63953076,64022059,68984,2,Smad6-201,1035,Smad6-201;Smad6-202;Smad6-203,Smad6;Smad6;Smad6,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,19,17130,ENSMUSG00000036867,conserved gene and region,9,64020165,64021315,1151,*,1151,140,0.724587315,0.927328392,0.121633362,4.23E-119,CpGisland,TRUE,NA,NRS
24808,cg09362148,0.000000951,0.0000019,0.500084708,0.61737023,gain,ns,-0.00000348,0.00000323,-1.077145604,0.282252724,neg,ns,0.001393743,0.000946552,1.472442418,0.141915967,pos,ns,0.84796874,-0.0000697,0.0000326,-2.140733898,0.033075327,neg,ns,0.031064336,Zc3h10,Zc3h10_fiveUTR,10,128547707,128547756,128547707,128547708,50,-,CGTAGTTGCTGCTGCCGCCTGCCGGTCCTCTAGCTTCGACAAAGAGCCGC,Promoter (<=1kb),10,128544798,128547743,2946,2,Zc3h10-203,0,Gm9176-201;Rpl41-206;Rpl41-203;Rpl41-201;Rpl41-207;Rpl41-204;Rpl41-202;Rpl41-205;Zc3h10-201;Zc3h10-203;Zc3h10-204;Zc3h10-202,Gm9176;Rpl41;Rpl41;Rpl41;Rpl41;Rpl41;Rpl41;Rpl41;Zc3h10;Zc3h10;Zc3h10;Zc3h10,3057;1397;1406;1549;1382;1346;1403;1356;0;0;-68;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,3,103284,ENSMUSG00000039810,mapped to different genes,10,128547460,128548104,645,*,645,49,0.618604651,0.798913044,0.075968992,2.09E-31,CpGisland,TRUE,U1,Pr-A
4971,cg14252141,0.0000305,0.00000446,6.83231902,4.43E-11,gain,yes,-0.00000817,0.00000758,-1.077004972,0.282315446,neg,ns,0.004404604,0.002221264,1.982927066,0.048257899,pos,ns,1.316431594,0.000042,0.0000764,0.549529309,0.583037907,pos,ns,0.125724608,Foxf2,Foxf2_Promoter,13,31624082,31624131,31624082,31624083,50,-,CGGTCTCTGTGTGTGGTATCCAGGCAGGGTTTGATGGAAAAAGCCTGCTT,Promoter (1-2kb),13,31625816,31631403,5588,1,Foxf2-201,-1734,Foxf2-201,Foxf2,-1685,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,3,3,14238,ENSMUSG00000038402,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
5776,cg20664891,-0.00000158,0.00000291,-0.543765486,0.586993699,loss,ns,0.00000533,0.00000494,1.077002807,0.282316412,pos,ns,0.0000333,0.001448662,0.022960556,0.981696508,pos,ns,0.008022754,0.00000979,0.0000498,0.196560958,0.844299924,pos,ns,0.50363942,Gapvd1,Gapvd1_Exon,2,34700792,34700841,34700840,34700841,50,+,CTCCACCAAGGTCTGTTCCTGTCTGATTTCTCATCATCGCTATCTTTGCG,"Exon (Gapvd1-202/Gapvd1, exon 17 of 27)",2,34674594,34755232,80639,2,Gapvd1-202,54391,Gapvd1-202;Gapvd1-206;Gapvd1-201;Gapvd1-203;Gapvd1-204;Gapvd1-213;Gapvd1-215;Gapvd1-208;Gapvd1-205;Gapvd1-207;Gapvd1-211,Gapvd1;Gapvd1;Gapvd1;Gapvd1;Gapvd1;Gapvd1;Gapvd1;Gapvd1;Gapvd1;Gapvd1;Gapvd1,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,66691,ENSMUSG00000026867,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26832,cg16461456,-0.0000158,0.00000471,-3.364905771,0.000861953,loss,ns,0.00000861,0.000008,1.076923311,0.282351872,pos,ns,-0.001279992,0.002342284,-0.546471571,0.585134919,neg,ns,0.232743983,-0.000116764,0.0000806,-1.449563337,0.148191207,neg,ns,0.897012304,St6galnac3,St6galnac3_Intergenic_downstream,3,153141205,153141254,153141205,153141206,50,+,CGTAGGAGTGGAAATTTAACAATTGAACATTTAATGGCTGCAATTATGGC,Distal Intergenic,3,153205366,153225783,20418,2,St6galnac3-203,84529,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,2,20447,ENSMUSG00000052544,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26770,cg23113120,0.0000178,0.00000841,2.112426299,0.035449312,gain,ns,-0.0000154,0.0000143,-1.076900219,0.282362173,neg,ns,-0.001485461,0.00418677,-0.354798919,0.722981487,neg,ns,0.140872823,-0.0000854,0.000143983,-0.593397867,0.553347609,neg,ns,0.835764648,Iqsec2,Iqsec2_Exon,X,152222240,152222289,152222288,152222289,50,-,GGGGTTGCTGCTCTGACGCTGGGCTCCTTGCTTGTGGGTGCAGGGAAGCG,"Exon (Iqsec2-207/Iqsec2, exon 14 of 15)",20,152144268,152225235,80968,1,Iqsec2-207,77972,Iqsec2-207;Iqsec2-202;Iqsec2-203;Iqsec2-201,Iqsec2;Iqsec2;Iqsec2;Iqsec2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,16,245666,ENSMUSG00000041115,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27105,cg12545274,0.00000377,0.00000638,0.590154804,0.555516801,gain,ns,0.0000117,0.0000108,1.076891362,0.282366124,pos,ns,0.007416889,0.00317657,2.334873273,0.020188103,pos,ns,1.694904486,-0.000213505,0.000109242,-1.954421272,0.051550138,neg,ns,0.894099137,Lrrc7,Lrrc7_Exon,3,158170689,158170738,158170737,158170738,50,+,ACAGATTTTACCATATTCTTTAAATCCTCTGGGTAAGGAGTTGGATATCG,"Exon (Lrrc7-206/Lrrc7, exon 16 of 25)",3,158082891,158353433,270543,2,Lrrc7-206,182695,Lrrc7-206;Lrrc7-205;Lrrc7-204;Lrrc7-207;Lrrc7-201,Lrrc7;Lrrc7;Lrrc7;Lrrc7;Lrrc7,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,10,242274,ENSMUSG00000028176,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22151,cg10636662,-0.00000203,0.00000063,-3.22368513,0.001400356,loss,ns,0.00000115,0.00000107,1.076689775,0.28245606,pos,ns,-0.000566082,0.000313717,-1.804433833,0.072133757,neg,ns,1.141861448,0.00000829,0.0000108,0.768781963,0.442608051,pos,ns,0.988321726,Agbl4,Agbl4_Exon,4,111448552,111448601,111448552,111448553,50,+,CGAGCCGGAGTTACGGAGCACTTTCAGTGAGGAAGCAAATACGTCGTCCT,"Exon (Bend5-201/Bend5, exon 4 of 6)",4,110397698,111567010,1169313,1,Agbl4-205,1050854,Agbl4-205;Agbl4-206;Agbl4-201;Agbl4-202;Agbl4-209;Bend5-201;Bend5-203;Bend5-206;Bend5-202,Agbl4;Agbl4;Agbl4;Agbl4;Agbl4;Bend5;Bend5;Bend5;Bend5,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,16,78933,ENSMUSG00000061298,mapped to different genes,4,111448510,111448618,109,*,109,9,0.52293578,1.208128079,0.082568807,0.0000019,CpGisland,TRUE,NA,NRS
17734,cg10957569,-0.00000409,0.00000192,-2.126443519,0.034256112,loss,ns,0.00000352,0.00000327,1.07650473,0.282538633,pos,ns,-0.00067495,0.000956594,-0.705576656,0.480981299,neg,ns,0.317871809,0.0000215,0.0000329,0.652791049,0.514374795,pos,ns,0.948345,Zic4,Zic4_Intron,9,91544874,91544923,91544922,91544923,50,-,ATCAGTCTCAGCATAAAATGCTATCATTCCCATAGACCAACTGTTTACCG,"Intron (Gm29478-201/Gm29478-201, intron 1 of 2)",9,91382410,91388044,5635,1,Zic4-202,162513,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,55,22774,ENSMUSG00000036972,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2067,cg15785094,-0.00000655,0.00000866,-0.756746406,0.449776545,loss,ns,0.0000158,0.0000147,1.076488162,0.282546027,pos,ns,0.001754419,0.004310783,0.406983933,0.684300649,pos,ns,0.164753048,-0.000134392,0.000148247,-0.906538567,0.36535495,neg,ns,0.613998879,Etaa1,Etaa1_Intergenic_downstream,11,17812121,17812170,17812121,17812122,50,+,CGAAACCTCCCGGAGGCAAGCATCTTTAAAATTACAGGCAACACTTTGTA,Distal Intergenic,11,17938756,17953875,15120,2,Etaa1-201,141705,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,3,68145,ENSMUSG00000016984,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5315,cg25894276,0.000074,0.0000056,13.21732706,6.14E-32,gain,yes,-0.0000102,0.00000952,-1.07631871,0.282621658,neg,ns,0.013353758,0.002788204,4.789376447,0.0000026,pos,ns,5.585594881,-0.000193244,0.0000959,-2.015344658,0.044731323,neg,ns,0.084604984,Nkx1-1,Nkx1-1_Promoter,5,33432986,33433035,33432986,33432987,50,+,CGCGATCAATAGCGGCCCCTAATAAGTGTAATAGGTTTTAATCGAGTAAT,Promoter (<=1kb),5,33430734,33433976,3243,2,Nkx1-1-201,941,Nkx1-1-201,Nkx1-1,0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,8,13,672284,ENSMUSG00000029112,conserved gene but different region,5,33432835,33433235,401,*,401,27,0.518703242,1.022283071,0.067331671,3.24E-16,CpGisland,TRUE,U13,Hc-P
21642,cg02190183,-0.0000119,0.00000731,-1.633674684,0.103342323,loss,ns,0.0000134,0.0000124,1.076215293,0.282667822,pos,ns,0.002610035,0.003639478,0.717145357,0.473824404,pos,ns,0.324382575,-0.000196594,0.000125161,-1.57072589,0.117266416,neg,ns,0.125779373,Zfhx3,Zfhx3_fiveUTR,8,108714824,108714873,108714872,108714873,50,-,TTAACCTTCCGCTTTGTTGCTGTGTAATGTGGATCCCCGAAGGCCCCCCG,5' UTR,8,107942644,108961630,1018987,1,Zfhx3-204,772180,Zfhx3-204;Zfhx3-202;Zfhx3-201,Zfhx3;Zfhx3;Zfhx3,0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,11,177,11906,ENSMUSG00000038872,conserved gene but different region,8,108714612,108715434,823,*,823,88,0.725394897,0.812839506,0.106925881,1.42E-69,CpGisland,TRUE,U1,Pr-A
20963,cg19532771,-0.00000167,0.00000158,-1.052683078,0.293306097,loss,ns,0.00000289,0.00000269,1.076171106,0.282687549,pos,ns,0.001658909,0.000787789,2.105778145,0.036027575,pos,ns,1.443364968,-0.0000385,0.0000271,-1.420504257,0.156465918,neg,ns,0.941740245,Zfp326,Zfp326_Exon,5,105886195,105886244,105886195,105886196,50,-,CGTGATTATGGCCCTGGATCTTATGGAGGTCTGACATTCAAGGATATTTA,"Exon (Zfp326-209/Zfp326, exon 3 of 12)",5,105876565,105914780,38216,1,Zfp326-209,9630,Zfp326-209;Zfp326-208;Zfp326-201;Zfp326-205;Zfp326-206;Zfp326-202;Zfp326-203;Zfp326-204,Zfp326;Zfp326;Zfp326;Zfp326;Zfp326;Zfp326;Zfp326;Zfp326,0;0;0;0;0;9254;0;-4700,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,Exon,11,11,54367,ENSMUSG00000029290,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11566,cg13254809,-0.00000888,0.00000257,-3.456222149,0.00062425,loss,ns,0.00000469,0.00000436,1.076096636,0.282720796,pos,ns,0.000534165,0.001278124,0.417928699,0.676288586,pos,ns,0.169867942,-0.0000396,0.000044,-0.900211045,0.368706722,neg,ns,0.920369017,Fbxo33,Fbxo33_threeUTR,12,59201126,59201175,59201174,59201175,50,-,TTAAAACTGGGGTCAGGTGGAAGTCTCACAGAGACCACGTCTGTACCGCG,3' UTR,12,59200655,59219725,19071,2,Fbxo33-201,18550,Fbxo33-201;Fbxo33-204;Fbxo33-202;Fbxo33-203,Fbxo33;Fbxo33;Fbxo33;Fbxo33,0;0;0;17626,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,7,11,70611,ENSMUSG00000035329,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25056,cg19092839,-0.00000207,0.00000148,-1.398457802,0.162975212,loss,ns,0.0000027,0.00000251,1.076002615,0.282762776,pos,ns,0.001175972,0.000735357,1.59918458,0.110798257,pos,ns,0.955467073,-0.0000555,0.0000253,-2.19660599,0.028788674,neg,ns,0.952657917,Epb41,Epb41_Intron,4,131960251,131960300,131960251,131960252,50,+,CGGTAGATCTAAAAATGAACTCGACCTTATTTGTGCCAGAACAAAGCATT,"Intron (Epb41-216/Epb41, intron 3 of 8)",4,131923413,131967845,44433,2,Epb41-216,7545,Epb41-216;Epb41-210;Epb41-212;Epb41-202;Epb41-206;Epb41-204;Epb41-207;Epb41-215;Epb41-203;Epb41-208;Epb41-201;Epb41-214;Epb41-205;Epb41-219;Epb41-213;Epb41-220,Epb41;Epb41;Epb41;Epb41;Epb41;Epb41;Epb41;Epb41;Epb41;Epb41;Epb41;Epb41;Epb41;Epb41;Epb41;Epb41,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,2,269587,ENSMUSG00000028906,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13425,cg26363051,0.000000695,0.00000137,0.506761926,0.612682127,gain,ns,-0.00000251,0.00000233,-1.075998566,0.282764584,neg,ns,-0.000935374,0.000682309,-1.370895736,0.171399142,neg,ns,0.765991357,0.0000093,0.0000235,0.396289099,0.692164401,pos,ns,0.036550393,Sp5,Sp5_Promoter,2,70474795,70474844,70474795,70474796,50,-,CGGGTCTCCAGGCGGCAAGGCCCCCTTTGATCAGGAAAATCCAATTATTT,Promoter (<=1kb),2,70474923,70477729,2807,1,Sp5-201,-128,Sp5-201,Sp5,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,4,11,64406,ENSMUSG00000075304,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
10724,cg27122592,-0.0000579,0.0000233,-2.479582571,0.013684794,loss,ns,0.0000427,0.0000396,1.075870508,0.282821768,pos,ns,0.0248643,0.011614575,2.140784303,0.033071225,pos,ns,1.480549718,-0.000169383,0.000399424,-0.424067564,0.671810657,neg,ns,0.345240547,Zfp462,Zfp462_Intron,4,55013942,55013991,55013990,55013991,50,-,CCTAGTGACTTAGCTTGCCAGAGAGCTCAATAAGTCAATTAAACATTTCG,"Intron (Zfp462-203/Zfp462, intron 3 of 12)",4,54947976,55083563,135588,1,Zfp462-203,65966,Zfp462-203;Zfp462-201;Zfp462-202,Zfp462;Zfp462;Zfp462,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,23,242466,ENSMUSG00000060206,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14754,cg12906630,-0.00000555,0.00000561,-0.989139726,0.323366193,loss,ns,0.0000103,0.00000953,1.075851569,0.282830226,pos,ns,0.014185732,0.002791952,5.080936227,0.00000065,pos,ns,6.186975739,-0.000445524,0.000096,-4.640145964,0.00000514,neg,ns,0.871657258,Taok1,Taok1_Exon,11,77553689,77553738,77553737,77553738,50,-,GCCTGGTGTTTCTTGATAAGTTTCTCCATTTCTGCAGCAAAATTGTTACG,"Exon (Taok1-201/Taok1, exon 13 of 19)",11,77529162,77585506,56345,2,Taok1-201,31768,Taok1-201;Taok1-202,Taok1;Taok1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,216965,ENSMUSG00000017291,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22298,cg14225551,0.00000049,0.00000174,0.282083253,0.778067901,gain,ns,-0.00000317,0.00000295,-1.075780305,0.282862053,neg,ns,0.00051964,0.000863967,0.601457577,0.54797483,pos,ns,0.26123939,-0.0000305,0.0000297,-1.025473484,0.305939347,neg,ns,0.9565588,Setd5,Setd5_Exon,6,113109559,113109608,113109607,113109608,50,+,GTTCTGAGTCTAAACCAGCCCAGAGTGGCTTCTCTAGGGGAAACTCCCCG,"Exon (Setd5-205/Setd5, exon 3 of 5)",6,113077365,113153435,76071,1,Setd5-201,32194,Setd5-209;Setd5-201;Setd5-206;Setd5-205;Setd5-203;Setd5-212;Setd5-202;Setd5-204;Setd5-210;Setd5-214;Setd5-207,Setd5;Setd5;Setd5;Setd5;Setd5;Setd5;Setd5;Setd5;Setd5;Setd5;Setd5,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,19,72895,ENSMUSG00000034269,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16040,cg21057263,-0.0000151,0.0000153,-0.987327486,0.324252101,loss,ns,0.0000279,0.0000259,1.075645188,0.282922405,pos,ns,0.000558147,0.007591755,0.0735201,0.941439665,pos,ns,0.026207508,-0.00014716,0.00026108,-0.563657535,0.573394727,neg,ns,0.822473949,Epha5,Epha5_Intron,5,84281597,84281646,84281645,84281646,50,-,TTGACCACATTACAATTTTCACACTTAGCAACTGTAAAATTGTTAAAGCG,"Intron (Epha5-201/Epha5, intron 3 of 15)",5,84054761,84416921,362161,2,Epha5-201,135275,Epha5-201;Epha5-205;Epha5-206;Epha5-202;Epha5-203;Epha5-204;Epha5-209;Epha5-208;Epha5-210,Epha5;Epha5;Epha5;Epha5;Epha5;Epha5;Epha5;Epha5;Epha5,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,9,13839,ENSMUSG00000029245,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10391,cg05313153,0.0000393,0.00000907,4.328028434,0.0000203,gain,ns,-0.0000166,0.0000154,-1.075613294,0.282936651,neg,ns,0.009023525,0.004516331,1.997977049,0.046592509,pos,ns,1.331683902,-0.000431599,0.000155316,-2.778840847,0.005788212,neg,ns,0.134526098,Ext1,Ext1_Exon,15,53344508,53344557,53344508,53344509,50,+,CGTGATATAAGGCATTCCTGGTGTCTGATCCTATCCCTGTCAGGTACCTC,"Exon (Ext1-201/Ext1, exon 1 of 11)",15,53064038,53346159,282122,2,Ext1-201,1602,Ext1-201;Ext1-203,Ext1;Ext1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,16,14042,ENSMUSG00000061731,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12909,cg06210673,-0.000106188,0.00000892,-11.90567673,3.61E-27,loss,yes,0.0000163,0.0000152,1.075543771,0.282967709,pos,ns,0.015934224,0.004439134,3.589488955,0.000385006,pos,ns,3.41453301,-0.000680546,0.000152661,-4.457878842,0.0000116,neg,ns,0.143761798,Arid5b,Arid5b_Intron,10,68275693,68275742,68275741,68275742,50,-,AAAGTCCTAATGAAATATACAAGTATAATCATACAGCTAATTACCAGCCG,"Intron (Arid5b-204/Arid5b, intron 2 of 9)",10,68092520,68278740,186221,2,Arid5b-204,2998,Arid5b-204;Arid5b-201;Arid5b-202,Arid5b;Arid5b;Arid5b,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,33,71371,ENSMUSG00000019947,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
10427,cg10258119,0.00000545,0.00000178,3.061142356,0.002397891,gain,ns,-0.00000325,0.00000302,-1.075424485,0.283021002,neg,ns,0.000336694,0.000886074,0.37998476,0.704216928,pos,ns,0.15229354,0.0000379,0.0000305,1.244073021,0.214412536,pos,ns,0.073890399,Septin8,Septin8_fiveUTR,11,53519869,53519918,53519869,53519870,50,-,CGCCAAGGGGAGTTTCCAGGAAGTGGCCATATTGGATCCATTCAGCCGCA,Promoter (<=1kb),11,53519908,53541898,21991,1,Septin8-203,0,Septin8-205;Septin8-201;Septin8-204;Septin8-202;Septin8-203;Septin8-207,Septin8;Septin8;Septin8;Septin8;Septin8;Septin8,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,6,9,,NA,mapped to different genes,11,53519650,53519870,221,*,221,27,0.778280543,0.808536585,0.122171946,2.06E-23,CpGisland,TRUE,U1,Pr-A
21987,cg21592065,0.0000553,0.00000582,9.494921283,6.18E-19,gain,yes,-0.0000106,0.0000099,-1.075410259,0.283027358,neg,ns,0.000465394,0.002899063,0.160532624,0.872566082,pos,ns,0.059201673,-0.000102365,0.0000997,-1.026745451,0.305340822,neg,ns,0.134386942,Dmrta2,Dmrta2_Promoter,4,109977976,109978025,109978024,109978025,50,-,TTGTCCAATTCTGTCTAATGGAGCCCTAAGGACCAACAATAGAGCGGGCG,Promoter (<=1kb),4,109978053,109983687,5635,1,Dmrta2-201,-77,Dmrta2-201,Dmrta2,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,7,13,242620,ENSMUSG00000047143,conserved gene and region,4,109978020,109978412,393,*,393,43,0.745547074,0.816140249,0.109414758,9.23E-35,CpGisland,TRUE,U3,Pr-B
229,cg26691897,-0.000000245,0.000000283,-0.865050473,0.387680001,loss,ns,-0.000000517,0.000000481,-1.075369388,0.28304562,neg,ns,-0.000449232,0.00014079,-3.190788823,0.001564197,neg,ns,2.805708682,0.00000913,0.00000484,1.885113247,0.060349678,pos,ns,0.993680038,Gm21992,Gm21992_threeUTR,19,4801739,4801788,4801739,4801740,50,+,CGAAAGCTGCGACTCTGATAAACGGCGGTAATCAGAGAGCTCGGCTAAAC,3' UTR,19,4742913,4811612,68700,2,Gm21992-203,9824,Gm21992-203;Gm21992-206;Gm21992-204;Gm21992-201;Gm21992-205;Gm21992-202;Rbm14-201;Rbm14-202;Rbm14-203,Gm21992;Gm21992;Gm21992;Gm21992;Gm21992;Gm21992;Rbm14;Rbm14;Rbm14,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,21,48,102902673,ENSMUSG00000096370,mapped to different genes,19,4801605,4801812,208,*,208,24,0.586538462,1.371428571,0.115384615,3.42E-20,CpGisland,TRUE,U10,Tr-S
27837,cg10243630,-0.00000363,0.00000171,-2.123255498,0.034524415,loss,ns,0.00000312,0.00000291,1.075294986,0.283078866,pos,ns,0.000659128,0.000851121,0.774422488,0.439271225,pos,ns,0.357267245,0.00000553,0.0000293,0.188892989,0.850300292,pos,ns,0.964174195,Esrrg,Esrrg_Intron,1,188186864,188186913,188186864,188186865,50,+,CGTTATGTCAAAATGCTTGTTGCTGCTTAATTTTGATATCTAATTAAGTG,"Intron (Esrrg-203/Esrrg, intron 6 of 7)",1,187609029,188214386,605358,1,Esrrg-203,577835,Esrrg-203;Esrrg-201;Esrrg-202,Esrrg;Esrrg;Esrrg,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,60,26381,ENSMUSG00000026610,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15448,cg20246785,0.000000507,0.00000536,0.094677937,0.92463181,gain,ns,0.00000979,0.0000091,1.075217308,0.283113578,pos,ns,0.010048331,0.002666252,3.768709837,0.000196411,pos,ns,3.706834917,-0.000293508,0.0000917,-3.20101747,0.001511444,neg,ns,0.90252521,Tnrc6b,Tnrc6b_threeUTR,15,80929729,80929778,80929729,80929730,50,-,CGCCAACCTAGAAAGACAATGTGAAGCAAGTACACATACCATTTAAATTT,3' UTR,15,80711313,80941085,229773,1,Tnrc6b-201,218416,Tnrc6b-201;Tnrc6b-208;Tnrc6b-210,Tnrc6b;Tnrc6b;Tnrc6b,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,24,213988,ENSMUSG00000047888,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17179,cg03205252,0.0000219,0.00000292,7.490616536,7.20E-13,gain,yes,-0.00000533,0.00000496,-1.075118041,0.283157943,neg,ns,0.004109055,0.001452766,2.828435365,0.004982279,pos,ns,2.30257194,-0.000115994,0.00005,-2.321714946,0.02089616,neg,ns,0.037578044,Sall1,Sall1_Promoter,8,89044740,89044789,89044788,89044789,50,+,GGTGCTTCAAATGCCATTATTTCTCACTGAATATTTAAAGAGATCCCTCG,Promoter (<=1kb),8,89027235,89044162,16928,2,Sall1-201,-578,Sall1-201,Sall1,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,15,58198,ENSMUSG00000031665,conserved gene and region,8,89044788,89045000,213,*,213,15,0.563380282,0.924479167,0.070422535,1.59E-09,CpGisland,TRUE,U3,Pr-B
1913,cg08768944,-0.0000033,0.00000359,-0.919156011,0.358728607,loss,ns,-0.00000656,0.0000061,-1.075075632,0.283176898,neg,ns,-0.000433116,0.001788144,-0.24221523,0.808773556,neg,ns,0.092173057,-0.0000868,0.0000615,-1.411230135,0.159179577,neg,ns,0.947417048,Vstm2a,Vstm2a_threeUTR,11,16281815,16281864,16281815,16281816,50,-,CGAATATCTTATAACTTCTTCCGCAGGTGCGAGGATAGCTACAAGCCATG,3' UTR,11,16257724,16284186,26463,1,Vstm2a-201,24091,Vstm2a-201;Vstm2a-202;Vstm2a-205;Vstm2a-204;Vstm2a-203,Vstm2a;Vstm2a;Vstm2a;Vstm2a;Vstm2a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,7,211739,ENSMUSG00000048834,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9293,cg24921129,0.00000317,0.00000449,0.705562674,0.480989984,gain,ns,0.0000082,0.00000763,1.074990713,0.283214855,pos,ns,0.00330942,0.002235161,1.480617979,0.139724008,pos,ns,0.854728964,-0.0000537,0.0000769,-0.698538907,0.485363926,neg,ns,0.9104658,Gm47213,Gm47213_Intergenic_upstream,9,47973190,47973239,47973238,47973239,50,-,TCCTGGGATGTGACAGGTATTAATAACCCTATTAGCTGCAATCCCATCCG,Distal Intergenic,9,47947880,47948161,282,2,Gm47213-201,-25078,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,7,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15572,cg07342607,0.00000952,0.00000458,2.079272493,0.038414083,gain,ns,-0.00000836,0.00000778,-1.074983053,0.283218279,neg,ns,0.001512595,0.002277931,0.664021303,0.507170237,pos,ns,0.294846241,0.0000685,0.0000783,0.873964771,0.382813971,pos,ns,0.841283081,Gm50297,Gm50297_Intergenic_downstream,18,81852519,81852568,81852567,81852568,50,+,ACAGAAATCCTATACACTCCACTTTGTCAGCAGTTTTGAATTCATCGTCG,Distal Intergenic,18,82261062,82261262,201,2,Gm50297-201,408694,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,17,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24102,cg13379618,0.0000256,0.00000423,6.053051224,4.10E-09,gain,yes,-0.00000772,0.00000718,-1.074891333,0.283259281,neg,ns,-0.004632101,0.002104845,-2.200685064,0.028495454,neg,ns,1.545224423,-0.000094,0.0000724,-1.298468204,0.195091603,neg,ns,0.747145492,Prkcb,Prkcb_Exon,7,122544720,122544769,122544720,122544721,50,-,CGGATGAAACTGACCGATTTTAACTTCCTAATGGTGCTGGGGAAAGGCAG,"Exon (Prkcb-205/Prkcb, exon 9 of 18)",7,122288751,122634399,345649,1,Prkcb-205,255969,Prkcb-205;Prkcb-202;Prkcb-201,Prkcb;Prkcb;Prkcb,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,7,18751,ENSMUSG00000052889,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26338,cg19381237,0.00000162,0.00000743,0.21865085,0.827065914,gain,ns,0.0000136,0.0000126,1.074739079,0.283327352,pos,ns,0.001709157,0.003695754,0.462465022,0.644072308,pos,ns,0.191065373,0.00000284,0.000127097,0.022349363,0.982183651,pos,ns,0.77914217,Kiz,Kiz_Intergenic_upstream,2,146824190,146824239,146824238,146824239,50,+,GCCAATTATGTGTTATCCGATATGTTGCTGGGTATCTTGATCTTTGCCCG,Distal Intergenic,2,146855864,146970097,114234,1,Kiz-201,-31625,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,29,228730,ENSMUSG00000074749,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1721,cg02939383,-0.0000173,0.0000399,-0.434697034,0.664084789,loss,ns,-0.0000728,0.0000677,-1.074548758,0.283412458,neg,ns,0.003970897,0.019835531,0.200191108,0.841462385,pos,ns,0.074965293,-0.000531468,0.000682142,-0.779115694,0.436505913,neg,ns,0.459719557,Tle4,Tle4_Intergenic_upstream,19,14777532,14777581,14777532,14777533,50,-,CGAGTACATCAGTCATGTTCTGCCAAGGCAGCACATACAATTAAAAGGCA,Distal Intergenic,19,14448150,14598051,149902,2,Tle4-201,-179530,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,29,21888,ENSMUSG00000024642,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27873,cg03206963,-0.00000264,0.00000227,-1.159024197,0.247338328,loss,ns,0.00000415,0.00000386,1.074535688,0.283418303,pos,ns,0.001243664,0.001132061,1.098584576,0.272801801,pos,ns,0.564152767,0.00000819,0.0000389,0.210382127,0.833507653,pos,ns,0.954017683,Cenpf,Cenpf_Intron,1,189664440,189664489,189664440,189664441,50,-,CGAAGAAATGTTCAGCCAATCCTGGGACCCAGCAGGCTTATAATGCTATG,"Intron (Cenpf-204/Cenpf, intron 10 of 17)",1,189640606,189688086,47481,2,Cenpf-204,23597,Cenpf-204;Cenpf-203;Cenpf-206,Cenpf;Cenpf;Cenpf,0;0;6653,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,108000,ENSMUSG00000026605,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14631,cg27546709,-0.0000158,0.00000486,-3.248124616,0.001289091,loss,ns,-0.00000887,0.00000825,-1.074091073,0.283617193,neg,ns,-0.003116635,0.002418357,-1.288740268,0.198449313,neg,ns,0.702350401,-0.000113625,0.0000832,-1.366231171,0.172856638,neg,ns,0.911804474,Ttn,Ttn_Exon,2,76977121,76977170,76977121,76977122,50,-,CGCTTGTCCAGATCCATTGGTGGCTTTCAGGGAATATCGTCCACTGTTGG,"Exon (Ttn-201/Ttn, exon 3 of 191)",2,76703980,76982455,278476,2,Ttn-201,5285,Ttn-201;Ttn-203;Ttn-205;Ttn-204;Ttn-202;Ttn-207;Ttn-215;Ttn-217,Ttn;Ttn;Ttn;Ttn;Ttn;Ttn;Ttn;Ttn,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,12,22138,ENSMUSG00000051747,conserved gene and region,2,76977121,76977267,147,*,147,10,0.571428571,0.835227273,0.068027211,0.00000233,CpGisland,TRUE,U15,NS
7082,cg05705884,0.00000497,0.0000175,0.284239256,0.776416798,gain,ns,0.0000319,0.0000297,1.074066416,0.283628225,pos,ns,0.034121812,0.008710939,3.917122067,0.000110272,pos,ns,3.957535273,-0.001268089,0.000299568,-4.23305317,0.0000304,neg,ns,0.163004169,Lrp1b,Lrp1b_Exon,2,40851738,40851787,40851786,40851787,50,-,ATCTTGGTTTCTATGACAACACTCTGATTGGTTCCATCCATTCCAACACG,"Exon (Lrp1b-201/Lrp1b, exon 60 of 91)",2,40595248,42653624,2058377,2,Lrp1b-201,1801837,Lrp1b-201;Lrp1b-208,Lrp1b;Lrp1b,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,7,94217,ENSMUSG00000049252,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14169,cg12539415,0.0000611,0.00000691,8.837829227,7.45E-17,gain,yes,-0.0000126,0.0000117,-1.074049426,0.283635827,neg,ns,0.014718839,0.003438881,4.280124478,0.0000249,pos,ns,4.603317822,-0.00029447,0.000118263,-2.489958238,0.013299472,neg,ns,0.148345632,Gm28230,Gm28230_fiveUTR,2,74727085,74727134,74727085,74727086,50,-,CGTATGTTATTTAGTTAAATTTGTGAAAATTATGAGATGCTCACCAACCC,Promoter (<=1kb),2,74726728,74747918,21191,1,Gm28230-201,357,Gm28230-201;Hoxd3-203;Hoxd4-203;Hoxd4-201;Hoxd4-202,Gm28230;Hoxd3;Hoxd4;Hoxd4;Hoxd4,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,23,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
3259,cg22925388,0.0000136,0.00000626,2.17706244,0.030230033,gain,ns,-0.0000114,0.0000106,-1.073986375,0.283664041,neg,ns,-0.001627636,0.003115098,-0.522499201,0.601695993,neg,ns,0.220622881,-0.0000243,0.000107128,-0.22684644,0.820692666,neg,ns,0.788537716,Kcnma1,Kcnma1_Intron,14,23394618,23394667,23394618,23394619,50,+,CGGCTGCTGTCTCTTTGTTAACAGGAAGCCAAACTGATGAGTTTGTAATG,"Intron (Kcnma1-207/Kcnma1, intron 18 of 27)",14,23289431,23803304,513874,2,Kcnma1-207,408637,Kcnma1-207;Kcnma1-210;Kcnma1-205;Kcnma1-201;Kcnma1-208;Kcnma1-209;Kcnma1-212;Kcnma1-204;Kcnma1-202;Kcnma1-211;Kcnma1-229;Kcnma1-234;Kcnma1-223;Kcnma1-214;Kcnma1-216;Kcnma1-219;Kcnma1-220;Kcnma1-224;Kcnma1-233;Kcnma1-236;Kcnma1-237;Kcnma1-213;Kcnma1-228;Kcnma1-203;Kcnma1-206;Kcnma1-221;Kcnma1-225;Kcnma1-226;Kcnma1-230;Kcnma1-235;Kcnma1-217,Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,41,16531,ENSMUSG00000063142,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20839,cg02715869,-0.00000188,0.00000165,-1.135848986,0.256897129,loss,ns,-0.00000302,0.00000281,-1.073925113,0.283691456,neg,ns,-0.001886724,0.000823565,-2.290922491,0.022638691,neg,ns,1.64514869,0.0000374,0.0000283,1.318980554,0.188149086,pos,ns,0.949542949,Arfip2,Arfip2_threeUTR,7,105636281,105636330,105636281,105636282,50,-,CGCAGCTTGATGTTGAACTGCTGCAGGGTCTGCTCCAGCTGTTTCTGGTT,3' UTR,7,105634203,105640416,6214,2,Arfip2-206,4086,Arfip2-206;Arfip2-210;Arfip2-202;Arfip2-201;Arfip2-205;Arfip2-209;Arfip2-213;Arfip2-212;Arfip2-214;Arfip2-208;Arfip2-203;Arfip2-207;Arfip2-211;Arfip2-204;Gm45799-201;Gm45799-203;Gm45799-204;Gm45799-205;Gm45799-202;Gm45799-208;Gm45799-207;Gm45799-206;Timm10b-203;Timm10b-201;Timm10b-211;Timm10b-208;Timm10b-207;Timm10b-210;Timm10b-202;Timm10b-206;Timm10b-204;Timm10b-205;Timm10b-209;Trim3-203;Trim3-201;Trim3-202;Trim3-205;Trim3-207;Trim3-204,Arfip2;Arfip2;Arfip2;Arfip2;Arfip2;Arfip2;Arfip2;Arfip2;Arfip2;Arfip2;Arfip2;Arfip2;Arfip2;Arfip2;Gm45799;Gm45799;Gm45799;Gm45799;Gm45799;Gm45799;Gm45799;Gm45799;Timm10b;Timm10b;Timm10b;Timm10b;Timm10b;Timm10b;Timm10b;Timm10b;Timm10b;Timm10b;Timm10b;Trim3;Trim3;Trim3;Trim3;Trim3;Trim3,0;0;0;0;0;0;0;0;0;0;0;0;0;4010;-4222;-4232;0;-4234;-4240;-4247;-4690;-4853;-3726;-4118;-4221;-4234;-4237;-4241;-4241;-4259;-4260;-4341;-4787;0;0;0;0;-2756;-2710,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,4,76932,ENSMUSG00000030881,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25499,cg23272565,0.000150318,0.0000162,9.275160545,3.13E-18,gain,yes,-0.0000296,0.0000275,-1.073860774,0.28372025,neg,ns,0.05161335,0.008066156,6.398753959,5.78E-10,pos,ns,9.23834625,-0.002163444,0.000277394,-7.799160953,9.58E-14,neg,yes,0.795591016,Mgmt,Mgmt_Intron,7,136980790,136980839,136980838,136980839,50,-,GAAAACTCACCCAGAGAAATTTTGCAAGCATATTATTTTCCAATGTTTCG,"Intron (Mgmt-201/Mgmt, intron 2 of 4)",7,136894614,137130266,235653,1,Mgmt-201,86176,Mgmt-201,Mgmt,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,16,17314,ENSMUSG00000054612,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14391,cg03630442,0.0000388,0.0000135,2.875018305,0.004319587,gain,ns,-0.0000246,0.0000229,-1.073823744,0.283736823,neg,ns,0.00972918,0.006718839,1.448044794,0.148615132,pos,ns,0.827936968,-0.000186472,0.00023106,-0.807027219,0.42026954,neg,ns,0.154685444,Ctif,Ctif_Intron,18,75447191,75447240,75447239,75447240,50,+,AAAGGCATTTTCCGCTCTCTAAAGTAAACAATCAAACAGGAAATTAATCG,"Intron (Ctif-201/Ctif, intron 10 of 11)",18,75431224,75697554,266331,2,Ctif-201,250314,Ctif-201,Ctif,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,4,269037,ENSMUSG00000052928,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24184,cg09851363,0.0000678,0.0000115,5.915465902,8.75E-09,gain,yes,-0.0000209,0.0000195,-1.073744837,0.28377214,neg,ns,0.013737897,0.005701032,2.409720806,0.016547122,pos,ns,1.781277526,-0.000358614,0.000196058,-1.829124012,0.068341538,neg,ns,0.25374661,Tnrc6a,Tnrc6a_Exon,7,123186645,123186694,123186693,123186694,50,+,TCCTCCAGGTTCAATAGGAGATGGCTGGCCACGTGCCAAATCGCCTAACG,"Exon (Tnrc6a-201/Tnrc6a, exon 18 of 24)",7,123124177,123193987,69811,1,Tnrc6a-203,62468,Tnrc6a-203;Tnrc6a-201;Tnrc6a-205;Tnrc6a-208,Tnrc6a;Tnrc6a;Tnrc6a;Tnrc6a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,17,24,233833,ENSMUSG00000052707,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13978,cg07226063,-0.00000905,0.0000116,-0.779826817,0.436087789,loss,ns,0.0000212,0.0000197,1.073732623,0.283777607,pos,ns,-0.00199643,0.005775249,-0.345687221,0.729812257,neg,ns,0.136788847,-0.000173991,0.00019861,-0.876042973,0.381684975,neg,ns,0.722278352,Gm13668,Gm13668_Intergenic_upstream,2,73977727,73977776,73977775,73977776,50,+,AACTTACAAAGTTAATTGGAAACACTGTGGAGGTGTTACCACACAACTCG,Distal Intergenic,2,73959669,73960669,1001,2,Gm13668-201,-17058,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,18,20,667729,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16199,cg08864650,-0.000000854,0.00000155,-0.549590112,0.582996244,loss,ns,0.00000284,0.00000264,1.073730319,0.283778638,pos,ns,0.000525968,0.000773636,0.679865183,0.497097198,pos,ns,0.303558685,-0.0000102,0.0000266,-0.384385053,0.70095662,neg,ns,0.03425782,Cyp26b1,Cyp26b1_Intron,6,84585871,84585920,84585871,84585872,50,+,CGTTTTTTGTGGCATTAATAAAGAGTTATTTGTCCGCCGTTTCCACGGTC,"Intron (Cyp26b1-205/Cyp26b1, intron 1 of 5)",6,84571414,84587680,16267,2,Cyp26b1-205,1760,Cyp26b1-205;Cyp26b1-204;Cyp26b1-201;Cyp26b1-202;Cyp26b1-203,Cyp26b1;Cyp26b1;Cyp26b1;Cyp26b1;Cyp26b1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,9,232174,ENSMUSG00000063415,conserved gene and region,6,84585539,84585962,424,*,424,40,0.608490566,1.020150376,0.094339623,1.31E-29,CpGisland,TRUE,U3,Pr-B
23450,cg11590670,-0.000000703,0.00000163,-0.430830355,0.66689113,loss,ns,0.00000298,0.00000277,1.073720885,0.283782861,pos,ns,0.002462735,0.000812503,3.031045942,0.002642545,pos,ns,2.577977648,-0.0000277,0.0000279,-0.990256908,0.322820853,neg,ns,0.047117384,Eomes,Eomes_Intron,9,118487702,118487751,118487750,118487751,50,+,CACCAAATTGTGAAGAGATGTATCTAATTAATCCTCCTAGGATGACACCG,"Intron (Gm33460-201/Gm33460-201, intron 2 of 4)",9,118478861,118482757,3897,1,Eomes-203,8841,Eomes-202;Eomes-201;Eomes-203,Eomes;Eomes;Eomes,0;0;8841,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,8,13813,ENSMUSG00000032446,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27440,cg11245422,-0.00000264,0.00000194,-1.358381799,0.175330253,loss,ns,-0.00000354,0.0000033,-1.073484593,0.283888642,neg,ns,-0.000785209,0.000965744,-0.813060951,0.416807108,neg,ns,0.380064884,0.00000932,0.0000332,0.280504766,0.779277372,pos,ns,0.960777029,Pbx1,Pbx1_threeUTR,1,168183542,168183591,168183542,168183543,50,-,CGGACTGTACATCTGACTGGCTGCGAGTCCATCACTGTATCCTCCTGTCT,3' UTR,1,168119364,168432270,312907,2,Pbx1-208,248679,Pbx1-208;Pbx1-205;Pbx1-206;Pbx1-201;Pbx1-202,Pbx1;Pbx1;Pbx1;Pbx1;Pbx1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,84,18514,ENSMUSG00000052534,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21397,cg06561225,-0.000000994,0.00000782,-0.127097333,0.898945763,loss,ns,-0.0000143,0.0000133,-1.073450472,0.28390392,neg,ns,0.00729734,0.003892112,1.874905043,0.061745827,pos,ns,1.209392391,-0.000224269,0.000133849,-1.675535487,0.09483751,neg,ns,0.885181509,Helz,Helz_Exon,11,107619125,107619174,107619125,107619126,50,-,CGACTGGTGATGACCAAAGTCAATGCTGTTTATTTATTACCAGTCCCTAA,"Exon (Helz-202/Helz, exon 14 of 30)",11,107547956,107672287,124332,1,Helz-202,71169,Helz-202;Helz-201;Helz-203,Helz;Helz;Helz,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,8,78455,ENSMUSG00000020721,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6472,cg21765752,-0.00000338,0.0000073,-0.462630019,0.643954147,loss,ns,-0.0000133,0.0000124,-1.073388819,0.283931525,neg,ns,-0.003082119,0.003634242,-0.848077712,0.397049028,neg,ns,0.401155863,-0.000119593,0.000124981,-0.956883646,0.339371615,neg,ns,0.888288685,Zfp536,Zfp536_Intron,7,37389033,37389082,37389033,37389034,50,-,CGGATGCCATCCACAAGGAGGGCAGCTGCTCCTCCAATCTGCCCTGCTTT,"Intron (Zfp536-211/Zfp536, intron 3 of 3)",7,37318024,37568390,250367,2,Zfp536-211,179308,Zfp536-211,Zfp536,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,73,112,243937,ENSMUSG00000043456,conserved gene and region,7,37388948,37389045,98,*,98,8,0.551020408,1.076923077,0.081632653,0.00000999,CpGisland,TRUE,U15,NS
10578,cg25757781,0.0000599,0.00000945,6.341522678,8.03E-10,gain,yes,0.0000172,0.0000161,1.07333545,0.283955423,pos,ns,0.012835558,0.004703656,2.728846831,0.006718456,pos,ns,2.172730549,-0.00019906,0.000161758,-1.230601763,0.219404771,neg,ns,0.288281352,Prmt5,Prmt5_threeUTR,14,54516582,54516631,54516582,54516583,50,-,CGGATGGAAGACAGGCATGCAGAGGAAATCAAACCTACAACCGCGACAGA,Promoter (<=1kb),14,54507187,54517525,10339,2,Prmt5-201,894,Prmt5-201;Prmt5-206;Prmt5-202;Prmt5-207;Prmt5-204;Prmt5-205;Prmt5-203,Prmt5;Prmt5;Prmt5;Prmt5;Prmt5;Prmt5;Prmt5,0;-3126;0;0;0;-924;0,TRUE,FALSE,TRUE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,3,27374,ENSMUSG00000023110,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U4,Pr-F
12237,cg13077070,-0.000000219,0.00000169,-0.129072262,0.897384171,loss,ns,0.00000309,0.00000288,1.072931766,0.284136232,pos,ns,0.001521813,0.000843095,1.805030425,0.072040125,pos,ns,1.142425545,-0.0000375,0.000029,-1.294194672,0.19656147,neg,ns,0.956184705,Ptch1,Ptch1_Intron,13,63554921,63554970,63554969,63554970,50,-,GCTGGCTACATTCAGGCCTCAGAAAAATTTATTCAAGTCAACTGGTTTCG,"Intron (Ptch1-201/Ptch1, intron 2 of 22)",13,63508328,63565735,57408,2,Ptch1-201,10765,Ptch1-201;Ptch1-204;Ptch1-206;Ptch1-202;Ptch1-207;Ptch1-203;Ptch1-205,Ptch1;Ptch1;Ptch1;Ptch1;Ptch1;Ptch1;Ptch1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,36,19206,ENSMUSG00000021466,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23975,cg02338018,-0.00000808,0.00000375,-2.152281707,0.032146892,loss,ns,-0.00000684,0.00000637,-1.072857176,0.284169649,neg,ns,-0.000547469,0.001867357,-0.293178407,0.769581948,neg,ns,0.113745128,-0.0000361,0.0000642,-0.562438055,0.574224076,neg,ns,0.945766706,Dock9,Dock9_threeUTR,14,121583394,121583443,121583442,121583443,50,-,GTAATCAAAGTTGTTCCTCATCAGGAAGTAGAGCAGCTGGGAGGCCTCCG,3' UTR,14,121542046,121738861,196816,2,Dock9-208,155418,Dock9-208;Dock9-203;Dock9-201;Dock9-206;Dock9-209;Dock9-212;Dock9-202;Dock9-210;Dock9-207;Dock9-204,Dock9;Dock9;Dock9;Dock9;Dock9;Dock9;Dock9;Dock9;Dock9;Dock9,0;0;0;0;0;0;0;0;0;3303,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,4,105445,ENSMUSG00000025558,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7960,cg17482005,0.0000112,0.0000051,2.199763211,0.028561493,gain,ns,-0.00000929,0.00000866,-1.072720884,0.284230716,neg,ns,-0.006106274,0.002536648,-2.407221684,0.016658649,neg,ns,1.778360225,0.000186817,0.0000872,2.141536721,0.033010043,pos,ns,0.094264823,Pax2,Pax2_Intergenic_upstream,19,44670933,44670982,44670933,44670934,50,+,CGCTGGCGGCCACCGCACTGCAGCGCGGCACCAGCAGTCTATGACAAAAA,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-85063,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,19,44670871,44670957,87,*,87,8,0.701149425,0.899224806,0.091954023,0.00000415,CpGisland,TRUE,U13,Hc-P
7103,cg01162115,0.0000166,0.00000849,1.953153555,0.051700834,gain,ns,0.0000155,0.0000144,1.072605953,0.28428222,pos,ns,0.018594158,0.004226141,4.39979578,0.0000149,pos,ns,4.826225021,-0.000332857,0.000145337,-2.290249759,0.022678136,neg,ns,0.254222623,Zfpm2,Zfpm2_Intron,15,40978737,40978786,40978737,40978738,50,+,CGTTTAATTGAGTTTTACACAACCCAGTTGGGAGTAGCGCTGCAAGGTAG,"Intron (Zfpm2-201/Zfpm2, intron 5 of 7)",15,40655035,41104592,449558,1,Zfpm2-201,323702,Zfpm2-201;Zfpm2-203,Zfpm2;Zfpm2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,41,22762,ENSMUSG00000022306,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27867,cg22873312,-0.0000366,0.00000612,-5.983513335,6.02E-09,loss,yes,0.0000111,0.0000104,1.072549223,0.284307644,pos,ns,-0.007409196,0.003044969,-2.43325822,0.015528643,neg,ns,1.808866494,0.000196532,0.000104716,1.87680197,0.061484376,pos,ns,0.917506267,Ush2a,Ush2a_Intron,1,188882375,188882424,188882375,188882376,50,-,CGGCAGGTGAGTGCTTTATTGAAGTTGAAAGACCATTAACATTGATAGAG,"Intron (Ush2a-201/Ush2a, intron 60 of 70)",1,188263034,188965041,702008,1,Ush2a-201,619341,Ush2a-201,Ush2a,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,33,36,22283,ENSMUSG00000026609,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20552,cg25459317,0.000013,0.00000287,4.52258144,0.00000871,gain,ns,-0.00000523,0.00000488,-1.072444981,0.284354365,neg,ns,0.00222254,0.00142862,1.555724995,0.120793789,pos,ns,0.917955397,-0.0000612,0.0000491,-1.244782006,0.214152097,neg,ns,0.064071563,Ptpn13,Ptpn13_Promoter,5,103425788,103425837,103425788,103425789,50,+,CGGAGTCTGTTTCTAATTTCTGCAAATGATTGTGGAGATGGTGTGGTTAG,Promoter (<=1kb),5,103425192,103541434,116243,1,Ptpn13-204,596,Ptpn13-204;Ptpn13-202;Ptpn13-203;Ptpn13-201,Ptpn13;Ptpn13;Ptpn13;Ptpn13,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,1,2,19249,ENSMUSG00000034573,conserved gene and region,5,103424949,103425789,841,*,841,111,0.741973841,0.971202364,0.131985731,3.84E-99,CpGisland,TRUE,U3,Pr-B
17156,cg04580111,0.00000981,0.0000122,0.806894791,0.420345723,gain,ns,0.0000222,0.0000207,1.072334313,0.284403973,pos,ns,0.009928196,0.006052837,1.640254959,0.101966422,pos,ns,0.991542821,-0.000207155,0.000208157,-0.995186594,0.320421681,neg,ns,0.649778952,Nrxn3,Nrxn3_Intron,12,88900351,88900400,88900351,88900352,50,-,CGGGTTTATGGCAGCAATATTTCTCACAGTGTCAGAGATAAAATATCAAG,"Intron (Nrxn3-209/Nrxn3, intron 4 of 7)",12,88722876,89261571,538696,1,Nrxn3-209,177475,Nrxn3-209;Nrxn3-213;Nrxn3-208;Nrxn3-205,Nrxn3;Nrxn3;Nrxn3;Nrxn3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,39,18191,ENSMUSG00000066392,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9184,cg14633938,0.0000183,0.0000111,1.643068104,0.101382696,gain,ns,-0.0000203,0.0000189,-1.072117534,0.284501162,neg,ns,0.010157434,0.005547811,1.8308904,0.068076668,pos,ns,1.16700171,-0.000527038,0.000190789,-2.762414338,0.006080126,neg,ns,0.171473382,Cadm1,Cadm1_Intergenic_upstream,9,47423417,47423466,47423417,47423418,50,+,CGTTTTTCTGTCCTGTCAGGTCTATTTAAGTATTTAATGAGGTGAGATAG,Distal Intergenic,9,47530173,47853385,323213,1,Cadm1-204,-106707,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,18,77,54725,ENSMUSG00000032076,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
26647,cg25493327,-0.0000193,0.00000993,-1.941163331,0.053144547,loss,ns,-0.0000181,0.0000169,-1.072093993,0.284511717,neg,ns,-0.011306633,0.004940157,-2.288719579,0.022768082,neg,ns,1.642673561,0.000266851,0.000169892,1.570715319,0.117268872,pos,ns,0.872201363,Gm42647,Gm42647_Intron,3,149295653,149295702,149295701,149295702,50,+,ACAAAATGCCTTATAGACTTGTTCTGGAGTAACTGTATCAATTAACCACG,"Intron (Gm30382-202/Gm30382-202, intron 3 of 3)",3,149210271,149210729,459,1,Gm42647-201,85382,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,5,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4908,cg05124292,-0.00000598,0.00000263,-2.277922999,0.023411611,loss,ns,0.00000478,0.00000446,1.071853517,0.28461956,pos,ns,0.0000752,0.001307388,0.05754387,0.954149034,pos,ns,0.020383785,-0.0000358,0.000045,-0.79700001,0.426061014,neg,ns,0.928571733,Slc7a14,Slc7a14_Exon,3,31223485,31223534,31223485,31223486,50,-,CGGATCCATGTGATGGTGGAGAGCTTTAGCATGAGATAGATGTTCACCAG,"Exon (Slc7a14-201/Slc7a14, exon 7 of 8)",3,31202858,31310378,107521,2,Slc7a14-201,86844,Slc7a14-201;Slc7a14-202,Slc7a14;Slc7a14,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,241919,ENSMUSG00000069072,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4250,cg17521310,-0.000033,0.0000139,-2.377786764,0.018022983,loss,ns,-0.0000253,0.0000236,-1.07183637,0.284627251,neg,ns,0.009973543,0.006902372,1.444944327,0.149483563,pos,ns,0.825406558,-0.002514556,0.000237372,-10.5933146,1.39E-22,neg,yes,0.809619277,Anks1,Anks1_Exon,17,27986232,27986281,27986232,27986233,50,-,CGCTCTCGTTTGCTTTCCAGACGGAGATGGGCAGTGCTTTGCATGAGGCT,"Exon (Anks1-203/Anks1, exon 6 of 25)",17,27909306,28062775,153470,1,Anks1-203,76926,Anks1-203;Anks1-202;Anks1-211;Anks1-201,Anks1;Anks1;Anks1;Anks1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,6,224650,ENSMUSG00000024219,conserved gene but different region,17,27986135,27986254,120,*,120,10,0.6,0.987654321,0.083333333,0.000000362,CpGisland,TRUE,U10,Tr-S
24564,cg13783703,0.00000186,0.0000104,0.178987095,0.858064757,gain,ns,0.000019,0.0000177,1.071817926,0.284635523,pos,ns,0.002791837,0.00517976,0.538989682,0.590280832,pos,ns,0.228941319,-0.000194046,0.000178132,-1.089343409,0.276848566,neg,ns,0.735803424,Fgf6,Fgf6_Exon,6,127015586,127015635,127015634,127015635,50,-,ATGGCCCTGGGACAGAAACTGTTCATCACTATGTCCCGGGGAGCAGGACG,Promoter (<=1kb),6,127015586,127028187,12602,1,Fgf6-201,0,Fgf6-201,Fgf6,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,5,14177,ENSMUSG00000000183,conserved gene and region,6,127015622,127015726,105,*,105,11,0.695238095,0.868421053,0.104761905,6.39E-09,CpGisland,TRUE,U15,NS
19209,cg17674006,0.0000455,0.00000412,11.04943762,3.75E-24,gain,yes,-0.0000075,0.000007,-1.071750713,0.284665671,neg,ns,0.003444391,0.002049381,1.680698445,0.093828761,pos,ns,1.027664019,0.0001939,0.0000705,2.751205354,0.006286901,pos,ns,0.083752624,Wnt1,Wnt1_Exon,15,98792811,98792860,98792811,98792812,50,-,CGTCACCGAGCGCTGCAACTGCACCTTCCACTGGTGCTGCCACGTCAGCT,"Exon (Wnt1-201/Wnt1, exon 4 of 4)",15,98789857,98793837,3981,1,Wnt1-201,2954,Wnt1-201,Wnt1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,12,22408,ENSMUSG00000022997,conserved gene and region,15,98792311,98793016,706,*,706,73,0.662889518,0.946832745,0.103399433,1.17E-56,CpGisland,TRUE,U13,Hc-P
22274,cg26924760,0.0000684,0.0000102,6.728118051,8.30E-11,gain,yes,-0.0000185,0.0000173,-1.071637334,0.284716532,neg,ns,0.00460387,0.005056692,0.910451028,0.363292064,pos,ns,0.439744089,0.0000274,0.000173899,0.157800808,0.874716498,pos,ns,0.271571207,Sox9,Sox9_Intergenic_downstream,11,112840488,112840537,112840536,112840537,50,+,CCAGTTAATCCAGTTGCCCTGATTTGCATGGGATTTGCATAAACAGCACG,Distal Intergenic,11,112782224,112787760,5537,1,Sox9-201,58264,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,7,20682,ENSMUSG00000000567,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7186,cg12669264,0.0000895,0.0000134,6.674975722,1.14E-10,gain,yes,-0.0000244,0.0000228,-1.071596388,0.284734901,neg,ns,0.025190663,0.006673827,3.774545348,0.000192068,pos,ns,3.716544886,-0.000709265,0.000229512,-3.090311822,0.00218082,neg,ns,0.335120204,Jade1,Jade1_fiveUTR,3,41581211,41581260,41581211,41581212,50,+,CGGGGAGATCATGAAACGAGGTCGCCTTCCCAGCAGCAGTGAGGATTCTG,5' UTR,3,41555731,41616864,61134,1,Jade1-201,25480,Jade1-201;Jade1-210;Jade1-214;Jade1-202;Jade1-209;Jade1-204;Jade1-203;Jade1-211;Jade1-206;Jade1-212,Jade1;Jade1;Jade1;Jade1;Jade1;Jade1;Jade1;Jade1;Jade1;Jade1,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,16,269424,ENSMUSG00000025764,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
25880,cg13550059,-0.00000458,0.00000247,-1.855142652,0.06452505,loss,ns,0.00000449,0.00000419,1.071120176,0.284948601,pos,ns,0.00286649,0.001227616,2.335006654,0.020181035,pos,ns,1.695056567,-0.000112002,0.0000422,-2.652967006,0.008389751,neg,ns,0.949975309,Mad1l1,Mad1l1_Intron,5,140280547,140280596,140280595,140280596,50,-,CTCAATTTTAGTTTTAATCAGATTTTAACAAGGATATTAAGTCCATTTCG,"Intron (Mad1l1-202/Mad1l1, intron 9 of 16)",5,140008689,140321550,312862,2,Mad1l1-202,40954,Mad1l1-202;Mad1l1-201,Mad1l1;Mad1l1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,17120,ENSMUSG00000029554,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9576,cg01831882,0.000127783,0.0000109,11.68994058,2.12E-26,gain,yes,-0.0000199,0.0000186,-1.071095072,0.28495987,neg,ns,0.018312714,0.005440502,3.365997084,0.000858671,pos,ns,3.066173323,-0.000332666,0.000187098,-1.778025565,0.076379801,neg,ns,0.043484214,Foxg1,Foxg1_Exon,12,49385346,49385395,49385346,49385347,50,+,CGGCCTCACCTTCATGGACCGCGCCGGCTCCCTCTACTGGCCCATGTCGC,"Exon (Foxg1-204/Foxg1, exon 1 of 1)",12,49382883,49386855,3973,1,Foxg1-204,2463,Foxg1-202;Foxg1-203;Foxg1-204;Foxg1-201;Gm43517-201,Foxg1;Foxg1;Foxg1;Foxg1;Gm43517,0;2546;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,27,15228,ENSMUSG00000020950,conserved gene and region,12,49385116,49385808,693,*,693,72,0.670995671,0.980968858,0.103896104,4.68E-56,CpGisland,TRUE,U13,Hc-P
24002,cg17300913,-0.00000419,0.00000568,-0.737073271,0.461635268,loss,ns,-0.0000103,0.00000965,-1.0709558,0.28502239,neg,ns,0.001634423,0.002826762,0.578196272,0.563551395,pos,ns,0.249066471,-0.000154747,0.0000972,-1.59184649,0.112438358,neg,ns,0.883667455,Atxn2,Atxn2_Exon,5,121813483,121813532,121813483,121813484,50,-,CGCTCAAAGTGCACTACAGCCCATTCCAGTCTCGACAACAGCGCATTTCC,"Exon (Atxn2-201/Atxn2, exon 24 of 25)",5,121711609,121814950,103342,1,Atxn2-201,101874,Atxn2-201;Atxn2-209;Atxn2-214;Atxn2-215;Atxn2-217;Atxn2-210;Atxn2-203;Atxn2-206;Atxn2-212;Atxn2-211;Atxn2-205;Atxn2-218;Sh2b3-205;Sh2b3-202;Sh2b3-208;Sh2b3-204;Sh2b3-201;Sh2b3-203,Atxn2;Atxn2;Atxn2;Atxn2;Atxn2;Atxn2;Atxn2;Atxn2;Atxn2;Atxn2;Atxn2;Atxn2;Sh2b3;Sh2b3;Sh2b3;Sh2b3;Sh2b3;Sh2b3,0;0;0;11737;11372;0;0;0;2819;2518;0;0;23293;23327;15209;22572;23318;23285,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,Exon,12,16,20239,ENSMUSG00000042605,conserved gene but different region,5,121813431,121813604,174,*,174,15,0.632183908,0.881458967,0.086206897,8.65E-11,CpGisland,TRUE,U10,Tr-S
20594,cg10448255,-0.0000097,0.0000021,-4.624941907,0.00000551,loss,ns,0.00000382,0.00000356,1.070904573,0.285045389,pos,ns,-0.0000711,0.001044099,-0.068108885,0.945742866,neg,ns,0.024226926,-0.0000253,0.0000359,-0.705256881,0.481179962,neg,ns,0.943953464,Hipk1,Hipk1_Exon,3,103777579,103777628,103777579,103777580,50,+,CGGGAAAGGATGCTCACTTCAATCTGTCCTTGTCTGGCATAGGAGGGGTG,"Exon (Gm15886-202/Gm15886-202, exon 4 of 4)",3,103739815,103791563,51749,2,Hipk1-203,13935,Hipk1-203;Hipk1-202;Hipk1-201;Hipk1-206;Hipk1-205,Hipk1;Hipk1;Hipk1;Hipk1;Hipk1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,11,15257,ENSMUSG00000008730,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2694,cg23098364,0.00000207,0.00000334,0.619978104,0.535727649,gain,ns,-0.00000607,0.00000567,-1.070834405,0.285076893,neg,ns,0.001081587,0.001661772,0.650863558,0.515616696,pos,ns,0.287673029,0.0000426,0.0000571,0.745676976,0.456427596,pos,ns,0.911729227,Ilf3,Ilf3_threeUTR,9,21395431,21395480,21395479,21395480,50,-,ACAGACAGCAACGGGAAGATATCACACAGAGTGCGCAGGTATAGTCATCG,3' UTR,9,21367871,21405360,37490,1,Ilf3-201,27560,Ilf3-201;Ilf3-203;Ilf3-206;Ilf3-213;Ilf3-210;Ilf3-202;Ilf3-204;Ilf3-208;Ilf3-209;Ilf3-216;Ilf3-211;Ilf3-214;Ilf3-212,Ilf3;Ilf3;Ilf3;Ilf3;Ilf3;Ilf3;Ilf3;Ilf3;Ilf3;Ilf3;Ilf3;Ilf3;Ilf3,0;0;0;0;27428;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,TRUE,FALSE,threeUTR,5,11,16201,ENSMUSG00000032178,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18730,cg10727688,-0.0000287,0.00000632,-4.545487615,0.00000787,loss,ns,-0.0000115,0.0000107,-1.070791358,0.285096221,neg,ns,-0.00205582,0.003143658,-0.653957866,0.513623764,neg,ns,0.28935489,-0.000225268,0.00010811,-2.083690561,0.038007154,neg,ns,0.896460217,Spsb4,Spsb4_Exon,9,96995674,96995723,96995674,96995675,50,+,CGCCCAGGTACTGGCCATCCACGATGAAGCTGAGTGTGCCCTCATCCATG,"Exon (Spsb4-201/Spsb4, exon 2 of 3)",9,96943482,97018843,75362,2,Spsb4-201,23120,Spsb4-201;Spsb4-202,Spsb4;Spsb4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,3,211949,ENSMUSG00000046997,conserved gene and region,9,96995502,96995732,231,*,231,14,0.623376623,0.644865404,0.060606061,4.34E-08,CpGisland,TRUE,NA,NRS
17712,cg15406261,0.000012,0.00000217,5.516389568,7.31E-08,gain,yes,-0.00000396,0.00000369,-1.070775233,0.285103462,neg,ns,0.002805547,0.001082355,2.592077391,0.009991589,pos,ns,2.000365455,-0.0000546,0.0000372,-1.467518225,0.143248947,neg,ns,0.049788863,Zic4,Zic4_Intron,9,91406142,91406191,91406190,91406191,50,+,TACCGTGTGACACTGCCTATTCACCAGATAGATGTTCCCTGCCACACACG,"Intron (Gm29478-201/Gm29478-201, intron 1 of 2)",9,91382410,91388044,5635,1,Zic4-202,23732,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,55,22774,ENSMUSG00000036972,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
20246,cg26410180,0.0000375,0.00000345,10.8803991,1.44E-23,gain,yes,-0.00000628,0.00000586,-1.070718203,0.285129071,neg,ns,0.001910368,0.00171746,1.112321703,0.266861695,pos,ns,0.57371376,0.0000733,0.0000591,1.241297734,0.215434224,pos,ns,0.045071827,Hoxc10,Hoxc10_Exon,15,102967066,102967115,102967066,102967067,50,+,CGTCCTACCTCTCGCAGCTGGACTCCTGGGGCGACCCCAAAGCCGCCTAT,Promoter (<=1kb),15,102966796,102971893,5098,1,Hoxc10-201,270,Hoxc10-201;Hoxc5-202,Hoxc10;Hoxc5,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,21,209448,ENSMUSG00000022484,mapped to different genes,15,102966870,102967117,248,*,248,20,0.625,0.826666667,0.080645161,1.13E-13,CpGisland,TRUE,U13,Hc-P
21808,cg11922708,0.0000377,0.00001,3.754019161,0.000207757,gain,ns,0.0000183,0.0000171,1.070633493,0.285167113,pos,ns,0.007444014,0.005000931,1.488525683,0.137628864,pos,ns,0.861290476,-0.000168575,0.000171982,-0.980189815,0.327756761,neg,ns,0.560993546,Lmo1,Lmo1_Intergenic_upstream,7,109191317,109191366,109191365,109191366,50,+,AATCCAACTTTAATCCTAGTCATTAGGAATTAGGCATGCCGAGCCGTCCG,Distal Intergenic,7,109138675,109175207,36533,2,Lmo1-202,-16110,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,34,66,109594,ENSMUSG00000036111,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
473,cg01573140,0.000104811,0.000017,6.183447257,1.98E-09,gain,yes,-0.0000308,0.0000288,-1.070509531,0.285222787,neg,ns,0.028418618,0.00843628,3.36861961,0.000850831,pos,ns,3.070156566,-0.000800202,0.000290123,-2.758148425,0.006158084,neg,ns,0.309895494,Ogdh,Ogdh_Exon,11,6316800,6316849,6316800,6316801,50,-,CGGAATTAGTTGTGTAAATTTTGATGATGCTCCAGTAACTGTTTCTTCAA,"Exon (Ogdh-203/Ogdh, exon 4 of 24)",11,6291633,6356642,65010,1,Ogdh-201,25167,Ogdh-201;Ogdh-204;Ogdh-203;Ogdh-207;Ogdh-206;Ogdh-202,Ogdh;Ogdh;Ogdh;Ogdh;Ogdh;Ogdh,0;0;0;24815;24628;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,18293,ENSMUSG00000020456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26253,cg07199314,0.0000372,0.00000594,6.251973419,1.34E-09,gain,yes,0.0000108,0.0000101,1.070359442,0.285290206,pos,ns,0.0000111,0.00295831,0.003757646,0.997004256,pos,ns,0.001302988,0.0000159,0.000101736,0.156031672,0.876109613,pos,ns,0.818239884,Amot,Amot_fiveUTR,X,145489850,145489899,145489898,145489899,50,+,AGCCTTGATCAGGATAGGGAATTCTTGCTTATGAGCAGCTCCAGAAACCG,5' UTR,20,145446425,145505144,58720,2,Amot-201,15245,Amot-203;Amot-202;Amot-201;Amot-205;Amot-206,Amot;Amot;Amot;Amot;Amot,0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,4,27494,ENSMUSG00000041688,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
26241,cg03802507,0.000106346,0.0000186,5.714748368,2.58E-08,gain,yes,-0.0000338,0.0000316,-1.070308553,0.285313068,neg,ns,0.026076247,0.009261913,2.815427769,0.005183155,pos,ns,2.285405774,-0.000765581,0.000318516,-2.403584434,0.016822151,neg,ns,0.259988384,Vps13d,Vps13d_Intron,4,145000027,145000076,145000075,145000076,50,+,TACAAGACTCGAGCTGTATTACACGCCTTAATGATATGGTTCAACTGTCG,"Intron (Vps13d-202/Vps13d, intron 67 of 69)",4,144972622,145195005,222384,2,Vps13d-202,194929,Vps13d-202;Vps13d-203;Vps13d-201;Vps13d-210;Vps13d-205,Vps13d;Vps13d;Vps13d;Vps13d;Vps13d,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,10,230895,ENSMUSG00000020220,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25325,cg13884282,0.00000263,0.00000448,0.586503184,0.557964249,gain,ns,-0.00000814,0.0000076,-1.070229311,0.285348669,neg,ns,-0.00160602,0.002227935,-0.720855696,0.471541549,neg,ns,0.326480034,-0.0000832,0.0000766,-1.085583862,0.278506602,neg,ns,0.925341061,Runx3,Runx3_Intergenic_upstream,4,135050328,135050377,135050328,135050329,50,-,CGGTGCTACAGGAATTGAATTACCCCAGGGCCCAGAATTATTACCTTTTC,Distal Intergenic,4,135120652,135177990,57339,1,Runx3-201,-70324,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,6,12399,ENSMUSG00000070691,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14455,cg04680480,0.0000976,0.00000566,17.24339586,3.46E-47,gain,yes,-0.0000103,0.00000961,-1.070227864,0.285349319,neg,ns,0.006585354,0.002816024,2.338529221,0.019995147,pos,ns,1.6990754,-0.0000196,0.0000968,-0.201981353,0.840063783,neg,ns,0.140858416,Mafa,Mafa_Exon,15,75747021,75747070,75747069,75747070,50,+,TGCTCCACCTGGCTCTGGAGTTGGCACTTCTCGCTCTCCAGAATGTGCCG,"Exon (Mafa-201/Mafa, exon 1 of 1)",15,75745490,75748228,2739,2,Mafa-201,1158,Mafa-201,Mafa,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,378435,ENSMUSG00000047591,conserved gene and region,15,75747052,75747305,254,*,254,32,0.68503937,1.080851064,0.125984252,3.66E-28,CpGisland,TRUE,U3,Pr-B
21299,cg05742455,-0.000149198,0.0000182,-8.1930211,6.76E-15,loss,yes,0.0000331,0.0000309,1.070015796,0.285444611,pos,ns,-0.024812557,0.009063493,-2.737637217,0.006545692,neg,ns,2.184044404,0.000590612,0.000311693,1.89485416,0.059042055,pos,ns,0.771454773,Gm2726,Gm2726_Intergenic_downstream,13,107208389,107208438,107208437,107208438,50,+,AAATTACACAATTAGAGCAATTTTTCTCAGCTGCTCCACTACAGAAAACG,Distal Intergenic,13,107279615,107280191,577,2,Gm2726-201,71753,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,3,100040350,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10706,cg10213169,-0.00000133,0.00000231,-0.573965215,0.566407541,loss,ns,-0.0000042,0.00000393,-1.069835031,0.285525854,neg,ns,-0.002715353,0.001151211,-2.358692307,0.01895976,neg,ns,1.72216717,0.00010403,0.0000396,2.627692336,0.009024316,pos,ns,0.952259287,Anxa6,Anxa6_Exon,11,54994496,54994545,54994496,54994497,50,+,CGTAATGGGCCGGTGGCATCATGAGCCCCAGAATCAGCCTTGCCAGGTCT,"Exon (Anxa6-201/Anxa6, exon 17 of 25)",11,54979108,55033445,54338,2,Anxa6-201,38900,Anxa6-201;Anxa6-202;Anxa6-203,Anxa6;Anxa6;Anxa6,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,11749,ENSMUSG00000018340,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8884,cg12160807,0.000000545,0.00000466,0.116905089,0.907010966,gain,ns,0.00000847,0.00000792,1.069833079,0.285526731,pos,ns,0.003644846,0.002320554,1.570679262,0.117277253,pos,ns,0.930786216,-0.0000998,0.0000798,-1.250968094,0.211889408,neg,ns,0.88726268,Gbf1,Gbf1_Exon,19,46252128,46252177,46252176,46252177,50,+,GGCACAGCAGAGGGCATGGAGAACATGGCAGATGCTGTCACCCATGCTCG,"Exon (Gbf1-201/Gbf1, exon 5 of 40)",19,46152509,46286510,134002,1,Gbf1-201,99619,Gbf1-201;Gbf1-204;Gbf1-214;Gbf1-213;Gbf1-210,Gbf1;Gbf1;Gbf1;Gbf1;Gbf1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,18,107338,ENSMUSG00000025224,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14804,cg15620011,0.000251517,0.0000267,9.420480455,1.07E-18,gain,yes,0.0000485,0.0000454,1.069693137,0.285589637,pos,ns,0.073252855,0.013288337,5.512567491,7.45E-08,pos,ns,7.127679989,-0.000894448,0.000456985,-1.957281101,0.051211539,neg,ns,0.733932344,Myo18a,Myo18a_Intron,11,77830930,77830979,77830930,77830931,50,-,CGTCCAGACCTGCTATCCTGGCCCATCAATTTAATTGCAATTCAGATACA,"Intron (Myo18a-208/Myo18a, intron 19 of 41)",11,77763246,77865980,102735,1,Myo18a-208,67684,Myo18a-208;Myo18a-209;Myo18a-207;Myo18a-201;Myo18a-203;Myo18a-222;Myo18a-223;Myo18a-211;Myo18a-205;Myo18a-210;Myo18a-224;Myo18a-202;Myo18a-220;Myo18a-221;Myo18a-218,Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a,0;0;0;0;0;0;0;0;0;0;0;0;0;0;6376,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,18,360013,ENSMUSG00000000631,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27326,cg17424512,-0.00000653,0.00000345,-1.891299637,0.05951645,loss,ns,0.00000628,0.00000587,1.069556333,0.285651142,pos,ns,0.000538777,0.00171895,0.313433803,0.754161891,pos,ns,0.122535417,-0.0000637,0.0000591,-1.077339255,0.282166371,neg,ns,0.918251518,Slc12a5,Slc12a5_Exon,2,164976440,164976489,164976488,164976489,50,+,CTCCTACTACATGATTTCCAGGTCTCTGGGCCCAGAGTTTGGGGGTGCCG,"Exon (Slc12a5-209/Slc12a5, exon 6 of 26)",2,164960824,164997569,36746,1,Slc12a5-209,15616,Slc12a5-202;Slc12a5-209;Slc12a5-207;Slc12a5-201;Slc12a5-208;Slc12a5-210;Slc12a5-206,Slc12a5;Slc12a5;Slc12a5;Slc12a5;Slc12a5;Slc12a5;Slc12a5,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,9,57138,ENSMUSG00000017740,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20506,cg06617187,-0.00000198,0.00000266,-0.741858838,0.458734542,loss,ns,-0.00000484,0.00000453,-1.069477599,0.285686543,neg,ns,-0.001798502,0.001325939,-1.356399017,0.175959277,neg,ns,0.754587832,0.0000183,0.0000456,0.400897002,0.688772128,pos,ns,0.957794043,Dennd2c,Dennd2c_Exon,3,103165160,103165209,103165160,103165161,50,-,CGCCACTTCCTGGATCTCTTCATGGAAACTCAGATGTTTGCAGGATTCAT,"Exon (Dennd2c-204/Dennd2c, exon 16 of 18)",3,103102604,103169769,67166,1,Dennd2c-204,62556,Dennd2c-204;Dennd2c-202;Dennd2c-205;Dennd2c-203,Dennd2c;Dennd2c;Dennd2c;Dennd2c,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,329727,ENSMUSG00000007379,conserved gene and region,3,103165032,103165161,130,*,130,9,0.553846154,0.920535012,0.069230769,0.000008,CpGisland,TRUE,U11,Tr-P
3575,cg18750940,-0.00000223,0.00000166,-1.345677698,0.179389856,loss,ns,-0.00000301,0.00000281,-1.069463131,0.285693049,neg,ns,-0.000335994,0.000823727,-0.407894354,0.683632801,neg,ns,0.165177108,-0.0000273,0.0000283,-0.965322044,0.335135976,neg,ns,0.958029722,Chpf2,Chpf2_Exon,5,24589296,24589345,24589296,24589297,50,+,CGGCCCGCCTGGCTCATGTCAGAGACCCTGCGCCACCTTCACACACACTT,"Exon (Chpf2-201/Chpf2, exon 2 of 5)",5,24586741,24594395,7655,1,Chpf2-201,2555,Chpf2-201;Chpf2-206;Chpf2-202;Chpf2-204;Chpf2-203;Chpf2-205;Smarcd3-205;Smarcd3-201;Smarcd3-208,Chpf2;Chpf2;Chpf2;Chpf2;Chpf2;Chpf2;Smarcd3;Smarcd3;Smarcd3,0;2554;0;2524;0;-4142;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,100910,ENSMUSG00000038181,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17957,cg06432472,-0.00000136,0.0000113,-0.120045222,0.904525088,loss,ns,-0.0000205,0.0000192,-1.069381187,0.285729897,neg,ns,-0.016534715,0.005620908,-2.941644801,0.003510754,neg,ns,2.454599577,0.00062353,0.000193303,3.225666021,0.001391016,pos,ns,0.719614664,Mmp2,Mmp2_Intergenic_upstream,8,92801636,92801685,92801636,92801637,50,+,CGTGAATGAAGCCTCATTTCTGGCCTTGAGGAGCTTAAGATGTATGTGAA,Distal Intergenic,8,92827291,92853420,26130,1,Mmp2-201,-25606,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,4,17390,ENSMUSG00000031740,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
904,cg25190339,-0.0000108,0.00000845,-1.271618001,0.204462065,loss,ns,0.0000154,0.0000144,1.069306416,0.285763523,pos,ns,0.000882922,0.004207973,0.209821143,0.833945099,pos,ns,0.078862539,0.000114223,0.000144712,0.789314667,0.430531388,pos,ns,0.720672787,Zmynd11,Zmynd11_Exon,13,9686897,9686946,9686897,9686898,50,+,CGTGCCAGTGCTCCTGCTGGCACTTGATGGAGCAGTAGGATGTGTTCCAG,"Exon (Zmynd11-205/Zmynd11, exon 15 of 15)",13,9684833,9765314,80482,2,Zmynd11-205,78368,Zmynd11-205;Zmynd11-206;Zmynd11-207;Zmynd11-201;Zmynd11-211;Zmynd11-204;Zmynd11-203;Zmynd11-221;Zmynd11-202;Zmynd11-224;Zmynd11-210;Zmynd11-226;Zmynd11-220;Zmynd11-219,Zmynd11;Zmynd11;Zmynd11;Zmynd11;Zmynd11;Zmynd11;Zmynd11;Zmynd11;Zmynd11;Zmynd11;Zmynd11;Zmynd11;Zmynd11;Zmynd11,0;0;0;0;0;0;0;0;0;0;3564;77927;77404;78384,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,66505,ENSMUSG00000021156,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5204,cg17489897,-0.0000014,0.000000877,-1.597292232,0.111219379,loss,ns,-0.00000159,0.00000149,-1.069272114,0.28577895,neg,ns,0.000230188,0.000436567,0.527269283,0.598383734,pos,ns,0.22302022,-0.0000184,0.000015,-1.223855166,0.221936232,neg,ns,0.025862194,Pten,Pten_fiveUTR,19,32757622,32757671,32757670,32757671,50,+,TCTCTCCTCTCGGAAGCTGCAGCCATGATGGAAGTTTGAGAGTTGAGCCG,Promoter (<=1kb),19,32757497,32826160,68664,1,Pten-201,125,Pten-201;Pten-202,Pten;Pten,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,6,19211,ENSMUSG00000013663,conserved gene and region,19,32757060,32758216,1157,*,1157,133,0.715643907,0.89789357,0.114952463,1.83E-109,CpGisland,TRUE,U1,Pr-A
11223,cg23923691,-0.0000286,0.00000899,-3.180400534,0.001619512,loss,ns,0.0000163,0.0000153,1.06911881,0.285847905,pos,ns,0.009159177,0.004476516,2.046050273,0.041594883,pos,ns,1.380960097,-0.000373485,0.000153947,-2.426063205,0.015833929,neg,ns,0.657064455,Slc25a21,Slc25a21_Intron,12,57077003,57077052,57077051,57077052,50,+,TAATTTACTGTAGCATCAGAAATTCCACTGCATAAAAAACTCTAGAAACG,"Intron (Slc25a21-201/Slc25a21, intron 1 of 9)",12,56712634,57197472,484839,2,Slc25a21-201,120420,Slc25a21-201;Slc25a21-205;Slc25a21-202,Slc25a21;Slc25a21;Slc25a21,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,7,217593,ENSMUSG00000035472,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12133,cg23818859,-0.00000132,0.00000228,-0.579850246,0.562436791,loss,ns,0.00000414,0.00000387,1.068927862,0.285933807,pos,ns,0.003004586,0.001133894,2.64979322,0.00846717,pos,ns,2.072261739,-0.000104847,0.000039,-2.688769265,0.007559473,neg,ns,0.941275522,Fbxl17,Fbxl17_Intron,17,63075882,63075931,63075882,63075883,50,-,CGCCTGTGTAATTCTAATTTATGTCAACTAGAAATCAAAGAAATTCCAAG,"Intron (Fbxl17-201/Fbxl17, intron 8 of 8)",17,63057452,63500017,442566,2,Fbxl17-201,424086,Fbxl17-201;Fbxl17-203;Fbxl17-204;Fbxl17-205,Fbxl17;Fbxl17;Fbxl17;Fbxl17,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,8,50758,ENSMUSG00000023965,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14865,cg26166200,-0.00000261,0.00000106,-2.461070437,0.014396949,loss,ns,0.00000192,0.0000018,1.06889635,0.285947985,pos,ns,-0.00000655,0.000526992,-0.012419745,0.990098721,neg,ns,0.0043215,-0.00000293,0.0000181,-0.161846601,0.871532089,neg,ns,0.977403368,Phf12,Phf12_threeUTR,11,78024929,78024978,78024929,78024930,50,-,CGTAAGTAACAGTCTTCCTGCTCCGTCCCCAGATGGCAAGGTCAGCCCCG,3' UTR,11,77982754,78026214,43461,1,Phf12-202,42175,Phf12-202;Phf12-201;Phf12-207;Phf12-206;Phf12-208;Phf12-205;Phf12-203;Phf12-204,Phf12;Phf12;Phf12;Phf12;Phf12;Phf12;Phf12;Phf12,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,11,27,268448,ENSMUSG00000037791,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6273,cg12255331,-0.0000137,0.00000535,-2.557203554,0.011027611,loss,ns,-0.0000097,0.00000908,-1.068688157,0.286041668,neg,ns,-0.004363591,0.0026603,-1.640262868,0.101964777,neg,ns,0.991549827,0.0000276,0.0000915,0.301795082,0.763010639,pos,ns,0.651579317,Tshz3,Tshz3_Intron,7,36708579,36708628,36708579,36708580,50,-,CGTTATTGAAGATGGATGTTCCTTAAAAAAAGATTGATGGTGGATGCCGG,"Intron (Tshz3-201/Tshz3, intron 1 of 1)",7,36698118,36773553,75436,1,Tshz3-201,10461,Tshz3-201,Tshz3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,58,243931,ENSMUSG00000021217,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26175,cg26811557,-0.00000213,0.00000187,-1.135525012,0.257032556,loss,ns,-0.0000034,0.00000318,-1.068678941,0.286045816,neg,ns,0.00185831,0.000932115,1.993649343,0.047066347,pos,ns,1.327289508,-0.0000904,0.0000321,-2.81967043,0.005116842,neg,ns,0.9615282,Lmo4,Lmo4_Intergenic_upstream,3,144223812,144223861,144223860,144223861,50,+,AATAAAATGGTTACCAAATGTACTCTTTGTCCAGTTTTGTTCTGCAGCCG,Distal Intergenic,3,144188683,144205220,16538,2,Lmo4-207,-18592,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,54,16911,ENSMUSG00000028266,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18701,cg01268872,-0.00000571,0.00000506,-1.12791218,0.260229203,loss,ns,-0.00000918,0.0000086,-1.068617612,0.286073417,neg,ns,-0.007755754,0.002518105,-3.079995787,0.00225543,neg,ns,2.646770556,0.0000147,0.0000866,0.169895838,0.865202873,pos,ns,0.805010012,Lrrc4c,Lrrc4c_Intron,2,96766070,96766119,96766070,96766071,50,+,CGCAGCAGGGGTGACAAGGACATGTTCTGTGTGTTCATCGATCTGCAGTC,"Intron (Lrrc4c-202/Lrrc4c, intron 2 of 6)",2,96318169,97631666,1313498,1,Lrrc4c-202,447901,Lrrc4c-202;Lrrc4c-203,Lrrc4c;Lrrc4c,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,2,241568,ENSMUSG00000050587,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21104,cg00793219,0.000160598,0.00000907,17.70005482,6.14E-49,gain,yes,-0.0000165,0.0000154,-1.068505811,0.286123738,neg,ns,0.010173392,0.004515882,2.252803041,0.024970595,pos,ns,1.602571117,0.000160879,0.000155301,1.035918518,0.30104755,pos,ns,0.390137599,Barhl2,Barhl2_Promoter,5,106464976,106465025,106465024,106465025,50,-,GCGGCACTAATTAGGCCACATTAAAACCGTAGTGTGTCCCTAATGGTGCG,Promoter (6-7kb),5,106452523,106458166,5644,2,Barhl2-201,-6859,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,8,27,104382,ENSMUSG00000034384,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
18273,cg03724518,-0.000000125,0.000000213,-0.586577609,0.557914315,loss,ns,-0.000000387,0.000000363,-1.068212281,0.286255883,neg,ns,-0.000329983,0.000106258,-3.105475301,0.00207527,neg,ns,2.682925475,0.00000859,0.00000365,2.351606644,0.019318116,pos,ns,0.994162995,Xylt2,Xylt2_Exon,11,94667245,94667294,94667245,94667246,50,+,CGTCATAGAAATACAGGTGCACGCTGGACGGCAAGCCCCTGGGCTCAAAC,"Exon (Xylt2-201/Xylt2, exon 9 of 11)",11,94663851,94677515,13665,2,Xylt2-201,10221,Xylt2-201;Xylt2-204;Xylt2-203;Xylt2-205;Xylt2-202,Xylt2;Xylt2;Xylt2;Xylt2;Xylt2,0;0;0;0;10113,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,217119,ENSMUSG00000020868,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11795,cg00381965,0.00000294,0.00000241,1.221376666,0.222871476,gain,ns,0.00000437,0.00000409,1.068204931,0.286259192,pos,ns,0.0009539,0.001198614,0.795835897,0.426736396,pos,ns,0.369840315,-0.00000953,0.0000412,-0.231078255,0.817406445,neg,ns,0.917534109,Mbnl1,Mbnl1_Exon,3,60622159,60622208,60622159,60622160,50,+,CGGTGCTACGCCAGCCACTGTGTCCGCAGCAACAACATCTGCCACAAGTG,"Exon (Mbnl1-211/Mbnl1, exon 7 of 9)",3,60473079,60628200,155122,1,Mbnl1-211,149080,Mbnl1-216;Mbnl1-211;Mbnl1-201;Mbnl1-202;Mbnl1-203;Mbnl1-218;Mbnl1-219;Mbnl1-214;Mbnl1-207;Mbnl1-205;Mbnl1-212;Mbnl1-215;Mbnl1-223;Mbnl1-213,Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,19,36,56758,ENSMUSG00000027763,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14643,cg10553388,-0.00000873,0.0000021,-4.159386247,0.0000414,loss,ns,-0.00000381,0.00000357,-1.068138457,0.286289124,neg,ns,0.000186325,0.001044998,0.178301628,0.858602562,pos,ns,0.06620782,-0.0000395,0.0000359,-1.099056195,0.272596372,neg,ns,0.948431737,Rbfox2,Rbfox2_threeUTR,15,77084155,77084204,77084155,77084156,50,+,CGTCACTTCAGTAGGGGGCAAATCGGCTGTAGCCACCTCGGTATAAACTC,3' UTR,15,77078990,77306928,227939,2,Rbfox2-204,222724,Rbfox2-204;Rbfox2-203;Rbfox2-202;Rbfox2-206;Rbfox2-208;Rbfox2-209;Rbfox2-201;Rbfox2-211;Rbfox2-215;Rbfox2-207,Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,20,93686,ENSMUSG00000033565,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14621,cg24087602,-0.0000135,0.0000055,-2.449251472,0.014868621,loss,ns,0.00000999,0.00000935,1.068125027,0.286295172,pos,ns,0.002782062,0.002739258,1.015626199,0.310599429,pos,ns,0.507799347,-0.000166389,0.0000942,-1.766285774,0.078332068,neg,ns,0.877396268,Ttn,Ttn_Intron,2,76920609,76920658,76920657,76920658,50,-,TTTGTTCGAATAAACGCAACACCATGCTCTGTTTAAAAGATTCTGACACG,"Intron (Ttn-201/Ttn, intron 44 of 190)",2,76703980,76982455,278476,2,Ttn-201,61797,Ttn-201;Ttn-203;Ttn-205;Ttn-204;Ttn-211;Ttn-202,Ttn;Ttn;Ttn;Ttn;Ttn;Ttn,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,12,22138,ENSMUSG00000051747,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3893,cg23691177,0.000000353,0.00000348,0.101193864,0.919461986,gain,ns,0.00000632,0.00000592,1.067942892,0.286377196,pos,ns,0.000388283,0.001734102,0.223910065,0.822974776,pos,ns,0.084613476,-0.0000649,0.0000596,-1.088845398,0.27706781,neg,ns,0.924940963,5730522E02Rik,5730522E02Rik_Intron,11,25693566,25693615,25693566,25693567,50,-,CGGGCTGCATCAGCACTCAAATCTTATCTTGTTAAATCAGACAAATGTAG,"Intron (5730522E02Rik-202/5730522E02Rik, intron 2 of 5)",11,25617668,26210569,592902,2,5730522E02Rik-202,516954,5730522E02Rik-202;5730522E02Rik-201;5730522E02Rik-208,5730522E02Rik;5730522E02Rik;5730522E02Rik,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,90,70626,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8324,cg15720698,-0.0000023,0.00000293,-0.786622902,0.432103566,loss,ns,0.00000532,0.00000498,1.067844804,0.286421376,pos,ns,0.00198275,0.001458231,1.359695899,0.174914295,pos,ns,0.757174697,-0.0000995,0.0000501,-1.984563763,0.048074384,neg,ns,0.926133315,Zeb2,Zeb2_Exon,2,45021074,45021123,45021122,45021123,50,+,GAATAGCTAACACCAGCTCATTTAAATAGTATGTCTTACATGAGTTCTCG,"Exon (Zeb2-226/Zeb2, exon 3 of 3)",2,44983632,45117395,133764,2,Zeb2-212,96272,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-227;Zeb2-216;Zeb2-229;Zeb2-218;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,21,158,24136,ENSMUSG00000026872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11009,cg09079366,-0.000000773,0.00000274,-0.281902332,0.778206499,loss,ns,0.00000497,0.00000466,1.067675997,0.28649742,pos,ns,0.003003438,0.001364293,2.201461619,0.028439926,pos,ns,1.546071541,-0.0000998,0.0000469,-2.126613715,0.034241838,neg,ns,0.9396537,Habp2,Habp2_Intergenic_upstream,19,56234631,56234680,56234679,56234680,50,-,TGCTGGGATACGAACACAGTCTCTAAATAAATTGCTAGTGGCCTTAGGCG,Distal Intergenic,19,56287137,56320089,32953,1,Habp2-201,-52506,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,5,226243,ENSMUSG00000025075,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14363,cg02200118,0.000015,0.00000848,1.770713959,0.077590943,gain,ns,0.0000154,0.0000144,1.067486556,0.286582775,pos,ns,-0.000418859,0.004220185,-0.09925129,0.921002902,neg,ns,0.035739001,0.0000819,0.000145132,0.564336006,0.572933558,pos,ns,0.040439586,Smad7,Smad7_Intron,18,75370710,75370759,75370710,75370711,50,-,CGCCAGGCGGCCTCTTTTGTTTATCTGACAGCTAAATATCAAGGCAATCA,"Intron (Smad7-201/Smad7, intron 1 of 3)",18,75367529,75395935,28407,1,Smad7-201,3181,Smad7-201;Smad7-202;Smad7-205;Smad7-204;Smad7-203,Smad7;Smad7;Smad7;Smad7;Smad7,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,19,17131,ENSMUSG00000025880,conserved gene and region,18,75370519,75370718,200,*,200,25,0.76,0.869414015,0.125,5.57E-22,CpGisland,TRUE,U1,Pr-A
20363,cg03144714,-0.00000111,0.00000422,-0.264275377,0.79174334,loss,ns,-0.00000765,0.00000716,-1.06739435,0.286624326,neg,ns,-0.006047854,0.002098528,-2.88195027,0.004228147,neg,ns,2.37384992,0.000124695,0.0000722,1.727841006,0.085012618,pos,ns,0.058645174,Hoxc5,Hoxc5_fiveUTR,15,103013868,103013917,103013868,103013869,50,-,CGGAGGTCATCAAGCCAAATTTATGAGTGGCCGCTCGAGTCACGTGACTC,5' UTR,15,102967443,103015676,48234,1,Hoxc5-202,46425,Hoxc5-202;Hoxc5-201;Hoxc6-202;Hoxc6-203;Hoxc6-201,Hoxc5;Hoxc5;Hoxc6;Hoxc6;Hoxc6,0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,13,134,15424,ENSMUSG00000022485,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
23301,cg20461194,-0.000000433,0.00000245,-0.17642765,0.860073186,loss,ns,-0.00000445,0.00000417,-1.067361628,0.286639073,neg,ns,-0.00258964,0.001220817,-2.121235321,0.034695365,neg,ns,1.45972854,0.0000168,0.000042,0.400111386,0.689350045,pos,ns,0.94456633,Eri3,Eri3_Intron,4,117665020,117665069,117665068,117665069,50,+,TCTTTATCTGATCCCAATCAGGGCGGGGTAATTGGCTCTCTGGGGCAGCG,"Intron (Eri3-201/Eri3, intron 8 of 8)",4,117550365,117674297,123933,1,Eri3-201,114655,Eri3-201;Eri3-206;Eri3-203,Eri3;Eri3;Eri3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,82,97,140546,ENSMUSG00000033423,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24300,cg13581054,0.000018,0.00000389,4.612884844,0.00000582,gain,ns,-0.00000706,0.00000661,-1.067348786,0.286644861,neg,ns,0.00660881,0.001937186,3.41155147,0.000731615,pos,ns,3.135717689,-0.000296916,0.0000666,-4.456883717,0.0000116,neg,ns,0.09016039,Pou3f1,Pou3f1_Intron,4,124575284,124575333,124575332,124575333,50,-,GTTAATCCACTGAAGCGGAGCCCAAAATAAGCGCACTGCCTAATGTGCCG,"Intron (Gm2164-201/Gm2164-201, intron 1 of 1)",4,124656807,124660655,3849,1,Pou3f1-201,-81523,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,43,85,18991,ENSMUSG00000090125,mapped to different genes,4,124575150,124575468,319,*,319,28,0.648902821,0.833831217,0.087774295,5.62E-20,CpGisland,TRUE,U13,Hc-P
16916,cg25421636,-0.00000898,0.00000529,-1.696414139,0.090811323,loss,ns,0.0000096,0.00000899,1.06722772,0.286699426,pos,ns,0.002280546,0.002635034,0.865471167,0.387449509,pos,ns,0.411784885,-0.000149277,0.0000906,-1.647314216,0.100506699,neg,ns,0.603922821,Ascl1,Ascl1_Intergenic_downstream,10,87384813,87384862,87384861,87384862,50,+,TTAATGGGCATTCAGAGCTCATTAGTGAGGAAACACATCAGGAGTGACCG,Distal Intergenic,10,87490819,87493660,2842,2,Ascl1-201,108798,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,11,11,17172,ENSMUSG00000020052,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26890,cg20400963,0.00000237,0.00000711,0.332799265,0.739510759,gain,ns,-0.0000129,0.0000121,-1.06711739,0.286749158,neg,ns,-0.004543375,0.003538545,-1.283967064,0.200112284,neg,ns,0.69872625,-0.0000428,0.00012169,-0.351852546,0.7251879,neg,ns,0.875355817,Prdm16,Prdm16_Intron,4,154456839,154456888,154456887,154456888,50,-,GGCACCTCTTTAGTGATTAACCCAAGATTAATGGAGGCCCCCACTGCTCG,"Intron (Prdm16-201/Prdm16, intron 3 of 16)",4,154316125,154636866,320742,2,Prdm16-201,179978,Prdm16-201;Prdm16-202;Prdm16-203;Prdm16-204;Prdm16-205;Prdm16-206;Prdm16-210;Prdm16-207,Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,32,70673,ENSMUSG00000039410,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5595,cg22827906,-0.00000319,0.00000432,-0.739188093,0.460352121,loss,ns,-0.00000783,0.00000734,-1.067079649,0.286766172,neg,ns,-0.007941184,0.002150361,-3.692953657,0.00026189,neg,ns,3.58188068,-0.0000219,0.000074,-0.295586501,0.767743772,neg,ns,0.875604446,Apc,Apc_Exon,18,34298627,34298676,34298627,34298628,50,+,CGGGCCAGGGCCAGTGCAGCACTCCACAACATCATTCACTCACAGCCTGA,"Exon (Apc-209/Apc, exon 8 of 14)",18,34220924,34313506,92583,1,Apc-209,77703,Apc-209;Apc-203;Apc-202;Apc-207;Apc-205;Apc-206,Apc;Apc;Apc;Apc;Apc;Apc,0;0;0;0;0;-2585,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,7,11789,ENSMUSG00000005871,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16260,cg10850433,0.0000696,0.0000125,5.558659872,5.87E-08,gain,yes,-0.0000227,0.0000213,-1.06707041,0.286770337,neg,ns,0.02465421,0.006232269,3.955896072,0.0000946,pos,ns,4.024315195,-0.000719521,0.000214327,-3.357112854,0.000885731,neg,ns,0.314695004,Mrm1,Mrm1_Intergenic_downstream,11,84683105,84683154,84683105,84683106,50,+,CGCATGCTGTTCATGTTTATTTAGGATATTGTGAAATACAGTGAAATTTG,Distal Intergenic,11,84814743,84815390,648,2,Mrm1-203,132236,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,37,42,217038,ENSMUSG00000018405,conserved gene and region,11,84682980,84683106,127,*,127,10,0.57480315,0.984496124,0.078740158,0.000000615,CpGisland,TRUE,NA,NRS
1099,cg01341696,-0.0000071,0.00000551,-1.288431962,0.198556418,loss,ns,0.00000999,0.00000936,1.067066786,0.286771971,pos,ns,-0.003764657,0.00274333,-1.372294697,0.170963828,neg,ns,0.767095768,-0.0000908,0.0000943,-0.962819829,0.336388375,neg,ns,0.659913524,Gm14515,Gm14515_Intergenic_upstream,X,11561289,11561338,11561289,11561290,50,-,CGGGGCTGCTGGCTGATTTATAATTTATTGGTTTAGTGTCTCGTGGCAGG,Distal Intergenic,20,11601354,11601569,216,1,Gm14515-201,-40065,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,21,28,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4864,cg05188363,-0.00000703,0.00000168,-4.184249233,0.0000373,loss,ns,-0.00000305,0.00000285,-1.067058739,0.286775599,neg,ns,0.001646553,0.000836134,1.969245201,0.049815229,pos,ns,1.302637865,-0.0000662,0.0000288,-2.302093629,0.021992378,neg,ns,0.962909415,Zbtb44,Zbtb44_Exon,9,31066852,31066901,31066852,31066853,50,-,CGAGTGCAAAACATGTGGCGCCATGTTCACCAACTCTGGAAATTTAATCG,"Exon (Zbtb44-206/Zbtb44, exon 4 of 5)",9,31030644,31070233,39590,1,Zbtb44-205,36208,Zbtb44-205;Zbtb44-201;Zbtb44-206;Zbtb44-202;Zbtb44-204,Zbtb44;Zbtb44;Zbtb44;Zbtb44;Zbtb44,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,15,235132,ENSMUSG00000047412,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19698,cg21815749,-0.0000203,0.0000026,-7.7876559,1.03E-13,loss,yes,0.00000472,0.00000442,1.066970029,0.286815592,pos,ns,0.000629215,0.001295927,0.48553261,0.627641559,pos,ns,0.202288307,-0.0000412,0.0000446,-0.924608316,0.355888847,neg,ns,0.951800088,Stag1,Stag1_Exon,9,100757737,100757786,100757737,100757738,50,-,CGCACTTCTGGATTTAATCAACTTTTTTATCCAGTGTTCAGGATGTCGAG,"Exon (Stag1-206/Stag1, exon 5 of 34)",9,100643448,100796791,153344,1,Stag1-213,114289,Stag1-213;Stag1-206;Stag1-201;Stag1-208;Stag1-216;Stag1-203;Stag1-207,Stag1;Stag1;Stag1;Stag1;Stag1;Stag1;Stag1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,15,20842,ENSMUSG00000037286,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23505,cg12961579,-0.00000801,0.00000291,-2.75345617,0.006244876,loss,ns,-0.00000527,0.00000494,-1.06691187,0.286841815,neg,ns,-0.001412601,0.001447164,-0.976116854,0.329767649,neg,ns,0.481791952,0.0000519,0.0000498,1.042724876,0.297888207,pos,ns,0.928383775,Gm18441,Gm18441_Intergenic_downstream,12,118726112,118726161,118726160,118726161,50,-,TTCCAATGTAACAGATGTTCGCTAATCAGGCCAGATTTGGAGCCCTTGCG,Distal Intergenic,12,118732439,118733055,617,2,Gm18441-201,6943,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,9,100417195,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16863,cg09188243,-0.00000747,0.0000119,-0.627595399,0.530731028,loss,ns,-0.0000216,0.0000202,-1.066843539,0.286872625,neg,ns,-0.007864246,0.00592266,-1.327823143,0.185213416,neg,ns,0.732327558,-0.0000713,0.00020368,-0.349943065,0.726619057,neg,ns,0.788737975,Ythdc1,Ythdc1_threeUTR,5,86828130,86828179,86828130,86828131,50,-,CGTTCTTTGGACTGATAATAGGCACATGTATCAGAATAACATGATGGAGG,3' UTR,5,86804221,86836654,32434,1,Ythdc1-202,23909,Ythdc1-202;Ythdc1-203;Ythdc1-208;Ythdc1-201;Ythdc1-207;Ythdc1-206;Ythdc1-205;Ythdc1-204,Ythdc1;Ythdc1;Ythdc1;Ythdc1;Ythdc1;Ythdc1;Ythdc1;Ythdc1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,12,17,231386,ENSMUSG00000035851,conserved gene but different region,5,86828042,86828208,167,*,167,10,0.479041916,1.076724694,0.05988024,0.00000716,CpGisland,TRUE,U10,Tr-S
18613,cg13789775,0.0000234,0.00000485,4.813394177,0.00000232,gain,ns,-0.0000088,0.00000825,-1.066838508,0.286874894,neg,ns,-0.002961941,0.002416136,-1.225900155,0.2211667,neg,ns,0.655280263,0.000344297,0.0000831,4.14363256,0.0000441,pos,ns,0.124477212,Hoxb4,Hoxb4_fiveUTR,11,96318726,96318775,96318726,96318727,50,-,CGGAATAAATTTTAGTATATTTTGTGGGCAATTCCCAGAAATTAATGGCT,Promoter (<=1kb),11,96318267,96321638,3372,1,Hoxb4-201,459,Hoxb3-202;Hoxb4-201,Hoxb3;Hoxb4,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,6,15412,ENSMUSG00000038692,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
20737,cg09889758,-0.0000194,0.00000307,-6.330030382,8.58E-10,loss,yes,0.00000556,0.00000521,1.066826298,0.2868804,pos,ns,-0.00078629,0.00152747,-0.514766215,0.607083216,neg,ns,0.216751774,-0.000014,0.0000525,-0.266469359,0.79005491,neg,ns,0.934668094,Qser1,Qser1_threeUTR,2,104770102,104770151,104770150,104770151,50,-,TCCATGTAGCTCTTAAAGGTTTCCTTCATTGCTCTTGTGTTCAAAAAGCG,3' UTR,2,104754795,104816696,61902,2,Qser1-201,46545,Qser1-201;Qser1-202;Qser1-203,Qser1;Qser1;Qser1,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,2,99003,ENSMUSG00000074994,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22464,cg18594948,-0.00000161,0.00000235,-0.685407627,0.49359894,loss,ns,0.00000425,0.00000399,1.066826155,0.286880464,pos,ns,0.000727458,0.001167775,0.622943524,0.533779633,pos,ns,0.272638001,0.0000455,0.0000402,1.133075994,0.258057903,pos,ns,0.950463459,Wwox,Wwox_Intron,8,114731790,114731839,114731838,114731839,50,+,TGATTTAATGAAGTGTCTAGTGAGCCGGCCATAGATTTATCCTGTTGTCG,"Intron (Wwox-201/Wwox, intron 8 of 8)",8,114439655,115352708,913054,1,Wwox-201,292135,Wwox-201;Wwox-203;Wwox-204;Wwox-209,Wwox;Wwox;Wwox;Wwox,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,32,32,80707,ENSMUSG00000004637,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5947,cg03306513,0.0000348,0.0000147,2.365211892,0.018635206,gain,ns,-0.0000266,0.000025,-1.066636509,0.28696599,neg,ns,-0.002665033,0.007317371,-0.364206316,0.715952242,neg,ns,0.145115947,0.0000859,0.000251644,0.341491099,0.732965263,pos,ns,0.481477793,Slit3,Slit3_Intron,11,35544330,35544379,35544330,35544331,50,-,CGCGGAGGGCAGAGCAGTGACCTCCAATGATTTACAGGCCTTTAGCTTAA,"Intron (Slit3-201/Slit3, intron 5 of 35)",11,35121224,35708507,587284,1,Slit3-201,423106,Slit3-201;Slit3-202,Slit3;Slit3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,21,20564,ENSMUSG00000056427,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
21473,cg19088488,-0.0000185,0.00000478,-3.868375782,0.000133557,loss,ns,0.00000866,0.00000812,1.066505559,0.287025055,pos,ns,-0.003802877,0.002377955,-1.599221867,0.110789971,neg,ns,0.955499549,0.000144111,0.0000818,1.762228452,0.079016197,pos,ns,0.924386928,Bcl11b,Bcl11b_Intron,12,107928451,107928500,107928451,107928452,50,-,CGACGTGCCACAAATGGTATTTTACTCTCAATAAGAACTCGAGCTGAGTT,"Intron (Bcl11b-201/Bcl11b, intron 3 of 3)",12,107910403,108003602,93200,2,Bcl11b-201,75102,Bcl11b-201;Bcl11b-202;Bcl11b-203,Bcl11b;Bcl11b;Bcl11b,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,39,58208,ENSMUSG00000048251,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3643,cg03364873,-0.0000448,0.0000092,-4.873905271,0.00000175,loss,yes,0.0000167,0.0000156,1.066217973,0.2871548,pos,ns,-0.003744669,0.00457946,-0.817709633,0.414151048,neg,ns,0.382841235,-0.0000395,0.000157487,-0.250835636,0.802107362,neg,ns,0.719807095,Erfl,Erfl_Intron,7,24939344,24939393,24939344,24939345,50,+,CGATCAGATGGGATGAGAGCAATAAATTATTGTGACAAGATGCAATCCTG,"Intron (Erfl-201/Erfl, intron 1 of 5)",7,24927445,24944494,17050,2,Erfl-201,5101,Erfl-201,Erfl,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,36,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18462,cg20971724,0.00000955,0.00000569,1.678438851,0.094269176,gain,ns,0.0000103,0.00000967,1.06617502,0.287174181,pos,ns,0.001049437,0.002833317,0.370391855,0.711343487,pos,ns,0.147920641,-0.0000971,0.0000974,-0.997044683,0.319520436,neg,ns,0.916158803,Cnot1,Cnot1_Exon,8,95788655,95788704,95788655,95788656,50,-,CGGTAATTTTTCTTGGTTAAATTGTCCACCAGGTAGCTGATTTGAGACAA,"Exon (Cnot1-202/Cnot1, exon 2 of 49)",8,95719451,95807462,88012,2,Cnot1-202,18758,Cnot1-202;Cnot1-201;Cnot1-203;Cnot1-216;Cnot1-217;Cnot1-207;Cnot1-209,Cnot1;Cnot1;Cnot1;Cnot1;Cnot1;Cnot1;Cnot1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,24,234594,ENSMUSG00000036550,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14141,cg10976713,0.0000228,0.00000292,7.817770678,8.46E-14,gain,yes,-0.00000528,0.00000496,-1.06608936,0.287212836,neg,ns,0.003865154,0.001451687,2.662524995,0.00816043,pos,ns,2.088286937,-0.0000319,0.0000499,-0.638669263,0.523509678,neg,ns,0.058608507,Hoxd10,Hoxd10_Exon,2,74694299,74694348,74694347,74694348,50,-,AATGAAACTCAAGAAGATGAGCCGAGAGAACCGGATCCGAGAACTGACCG,"Exon (Hoxd10-201/Hoxd10, exon 2 of 2)",2,74691924,74695105,3182,1,Hoxd10-201,2375,Hoxd10-201;Hoxd9-201,Hoxd10;Hoxd9,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,21,24,15430,ENSMUSG00000050368,conserved gene and region,2,74694222,74694348,127,*,127,12,0.519685039,1.400735294,0.094488189,3.59E-09,CpGisland,TRUE,U13,Hc-P
22029,cg16915250,0.0000111,0.00000623,1.786624441,0.074975297,gain,ns,-0.0000113,0.0000106,-1.065821548,0.287333713,neg,ns,0.001628442,0.003099806,0.525336589,0.59972476,pos,ns,0.222048021,-0.0000258,0.000106602,-0.242172337,0.80880676,neg,ns,0.821480789,Elavl4,Elavl4_Exon,4,110211500,110211549,110211548,110211549,50,-,GGCCTGGCTGGACTTCTGGCTGGGGTTGTTGGCAAACTTCACAGTAATCG,"Exon (Elavl4-204/Elavl4, exon 5 of 7)",4,110203722,110287527,83806,2,Elavl4-204,75978,Elavl4-204;Elavl4-201;Elavl4-203;Elavl4-202;Elavl4-205;Elavl4-206;Elavl4-207;Elavl4-211;Elavl4-208,Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,36,15572,ENSMUSG00000028546,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12896,cg24214068,0.0000471,0.00000552,8.527496455,6.69E-16,gain,yes,-0.00000999,0.00000938,-1.065789267,0.287348285,neg,ns,0.006042347,0.002746694,2.199861511,0.028554445,pos,ns,1.544326277,-0.0000119,0.0000945,-0.125779543,0.899987969,neg,ns,0.079224289,Nefm,Nefm_fiveUTR,14,68124806,68124855,68124854,68124855,50,+,TAGCTCATCTTGGAGGCCTTGGGGCGTGTGGCTGTCACAGCGTTCTGCCG,Promoter (<=1kb),14,68082590,68124846,42257,2,Nefm-202,0,Nefm-202;Nefm-201,Nefm;Nefm,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,4,18040,ENSMUSG00000022054,mapped to different genes,14,68124846,68125102,257,*,257,25,0.723735409,0.743634259,0.097276265,4.87E-19,CpGisland,TRUE,U3,Pr-B
13434,cg17846090,0.0000762,0.0000163,4.672700703,0.00000444,gain,ns,-0.0000295,0.0000277,-1.065687767,0.287394107,neg,ns,0.023320587,0.008115426,2.873612038,0.004338356,pos,ns,2.362674801,-0.000765445,0.000279089,-2.742658036,0.006448826,neg,ns,0.473404336,Rex1bd,Rex1bd_threeUTR,8,70504488,70504537,70504488,70504489,50,-,CGCCTCCATGGTTTTAATTACCCTACAAGAGCGGATGGGAACTATAAATA,3' UTR,8,70504292,70506721,2430,2,Rex1bd-205,2184,Crlf1-201;Crlf1-203;Crlf1-202;Kxd1-204;Kxd1-207;Rex1bd-205;Rex1bd-208;Rex1bd-204;Rex1bd-201;Rex1bd-206;Rex1bd-207;Rex1bd-203;Rex1bd-202;Uba52-207;Uba52-205;Uba52-203;Uba52-204;Uba52-201;Uba52-206;Uba52-208;Uba52-202,Crlf1;Crlf1;Crlf1;Kxd1;Kxd1;Rex1bd;Rex1bd;Rex1bd;Rex1bd;Rex1bd;Rex1bd;Rex1bd;Rex1bd;Uba52;Uba52;Uba52;Uba52;Uba52;Uba52;Uba52;Uba52,11330;11127;3355;18626;23419;0;0;0;0;0;0;2162;2176;5813;5818;6044;5842;5880;6264;5086;5408,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,1,66462,ENSMUSG00000058833,conserved gene and region,8,70504318,70504520,203,*,203,13,0.630541872,0.65,0.064039409,7.93E-08,CpGisland,TRUE,U11,Tr-P
24640,cg11212450,-0.00000191,0.0000013,-1.4647204,0.144010608,loss,ns,-0.00000236,0.00000221,-1.065136066,0.28764326,neg,ns,0.00044608,0.000648819,0.687526138,0.492265295,pos,ns,0.307800781,-0.0000312,0.0000223,-1.397059789,0.163394798,neg,ns,0.975489517,Pard3,Pard3_Exon,8,127409670,127409719,127409670,127409671,50,+,CGTTAAAACACGAAAATCAAAAAGCATGGATTTAGGTAGTGAGTACAATC,"Exon (Pard3-219/Pard3, exon 17 of 25)",8,127063893,127611970,548078,1,Pard3-219,345777,Pard3-219;Pard3-202;Pard3-209;Pard3-211;Pard3-222;Pard3-201;Pard3-224;Pard3-210;Pard3-216;Pard3-223;Pard3-221;Pard3-213;Pard3-206;Pard3-214;Pard3-220;Pard3-215;Pard3-227,Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,8,93742,ENSMUSG00000025812,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3830,cg24557791,-0.0000122,0.00000694,-1.751025065,0.080930659,loss,ns,0.0000126,0.0000118,1.065113442,0.28765348,pos,ns,-0.003602843,0.003455912,-1.042515849,0.297984899,neg,ns,0.525805744,-0.0000577,0.000118849,-0.485184617,0.627888084,neg,ns,0.790103247,Adgrb3,Adgrb3_Exon,1,25553716,25553765,25553764,25553765,50,-,AATGGGCCGCTGCAGTGTGTCCCGTAAGGTGATACACAAGTTCTGGTTCG,"Exon (Adgrb3-206/Adgrb3, exon 3 of 29)",1,25067550,25826139,758590,2,Adgrb3-206,272374,Adgrb3-206;Adgrb3-205;Adgrb3-207;Adgrb3-201;Adgrb3-210,Adgrb3;Adgrb3;Adgrb3;Adgrb3;Adgrb3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,14,25,210933,ENSMUSG00000033569,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17385,cg04631128,-0.00000977,0.00000473,-2.067712851,0.039496437,loss,ns,0.00000855,0.00000803,1.065008687,0.287700806,pos,ns,0.004896177,0.002352477,2.081285942,0.038228174,pos,ns,1.417616449,-0.000144169,0.0000809,-1.782025405,0.075723825,neg,ns,0.942917422,Asb18,Asb18_Intron,1,90007490,90007539,90007490,90007491,50,+,CGTTAATTAAGAAGATGGGACAATAATTTGTGCATAATTCCGGATCTTTT,"Intron (Asb18-201/Asb18, intron 1 of 5)",1,89950220,90014577,64358,2,Asb18-201,7038,Asb18-201;Asb18-202;Asb18-204;Asb18-203,Asb18;Asb18;Asb18;Asb18,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,4,208372,ENSMUSG00000067081,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11169,cg19617977,-0.00000565,0.00000638,-0.885186065,0.376742363,loss,ns,-0.0000115,0.0000108,-1.064980134,0.287713707,neg,ns,-0.002228023,0.003176856,-0.701329551,0.48362351,neg,ns,0.315492596,-0.000174539,0.000109252,-1.597581105,0.111155011,neg,ns,0.68185948,Trpc7,Trpc7_threeUTR,13,56831270,56831319,56831318,56831319,50,-,CTTAAGCAGTCTGTACCTTGCTGCACGGAGCAATCCAATAGGCTATGGCG,3' UTR,13,56773113,56895737,122625,2,Trpc7-201,64418,Trpc7-201;Trpc7-202;Trpc7-203;Trpc7-204;Trpc7-205;Trpc7-206;Trpc7-208;Trpc7-207,Trpc7;Trpc7;Trpc7;Trpc7;Trpc7;Trpc7;Trpc7;Trpc7,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,5,26946,ENSMUSG00000021541,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4161,cg04527275,-0.0000181,0.00000392,-4.624859099,0.00000551,loss,ns,0.00000709,0.00000666,1.064887629,0.287755504,pos,ns,0.000451047,0.001951262,0.231156444,0.817345758,pos,ns,0.087594187,0.0000268,0.0000671,0.399375916,0.689891239,pos,ns,0.921372658,Il17rd,Il17rd_Intron,14,27048385,27048434,27048433,27048434,50,+,TCTTACCTCTGCTCATATTCAGATCCAGCCAAGCAATCAGTGACTTCCCG,"Intron (Il17rd-201/Il17rd, intron 1 of 12)",14,27038941,27107286,68346,1,Il17rd-201,9444,Il17rd-201;Il17rd-202;Il17rd-203,Il17rd;Il17rd;Il17rd,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,171463,ENSMUSG00000040717,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16968,cg24252790,-0.0000139,0.0000295,-0.471924973,0.637312346,loss,ns,-0.0000533,0.0000501,-1.064825416,0.287783616,neg,ns,-0.020352939,0.014671233,-1.387268464,0.166356437,neg,ns,0.77896039,0.000220783,0.000504543,0.437589663,0.661988476,pos,ns,0.576229225,Zfp423,Zfp423_Intron,8,87719426,87719475,87719474,87719475,50,-,CATGATGAAGGTTTCCCCGCAAAATCAAAAGGCTTACTGTCAAGTTTTCG,"Intron (Zfp423-203/Zfp423, intron 3 of 5)",8,87661810,87804439,142630,2,Zfp423-203,84964,Zfp423-203;Zfp423-202;Zfp423-201,Zfp423;Zfp423;Zfp423,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,42,53,94187,ENSMUSG00000045333,conserved gene and region,8,87719421,87719598,178,*,178,12,0.550561798,0.920689655,0.06741573,0.000000167,CpGisland,TRUE,U15,NS
24934,cg07826326,0.00000929,0.00000456,2.034409149,0.042761228,gain,ns,0.00000826,0.00000775,1.06479866,0.287795707,pos,ns,-0.00353751,0.002271698,-1.557209828,0.12044096,neg,ns,0.91922579,0.000107009,0.0000781,1.36974464,0.171757953,pos,ns,0.864942565,Adgrb2,Adgrb2_Exon,4,129992318,129992367,129992318,129992319,50,-,CGCCTGCTGCCCCTGGACCACTACCTGGTCAACTTTACCTGCCTGCGGCC,"Exon (Adgrb2-207/Adgrb2, exon 2 of 28)",4,129984870,130022633,37764,1,Adgrb2-207,7448,Adgrb2-207;Adgrb2-205;Adgrb2-208;Adgrb2-204;Adgrb2-201;Adgrb2-202;Adgrb2-206,Adgrb2;Adgrb2;Adgrb2;Adgrb2;Adgrb2;Adgrb2;Adgrb2,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,8,230775,ENSMUSG00000028782,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27431,cg21565988,0.000101344,0.000053,1.911825246,0.056820324,gain,ns,-0.0000959,0.0000901,-1.064737884,0.287823173,neg,ns,0.00855405,0.026383192,0.324223486,0.745987496,pos,ns,0.127268452,-0.001225314,0.000907316,-1.350482179,0.177846402,neg,ns,0.575822672,Pbx1,Pbx1_Intron,1,168135755,168135804,168135803,168135804,50,-,TTGGGTCTCCTGTGAGAGCCAGATACAGTTAATTTCCTGCAAAAGCTGCG,"Intron (Pbx1-208/Pbx1, intron 7 of 7)",1,168119364,168432270,312907,2,Pbx1-208,296466,Pbx1-208,Pbx1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,84,18514,ENSMUSG00000052534,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22361,cg15478432,0.0000248,0.00000549,4.521088586,0.00000877,gain,ns,0.00000993,0.00000933,1.064603367,0.28788397,pos,ns,0.00896933,0.002732808,3.282093179,0.00114802,pos,ns,2.940050713,-0.000452597,0.000094,-4.815835797,0.0000023,neg,ns,0.091793738,Snx18,Snx18_Exon,13,113617534,113617583,113617582,113617583,50,+,AGATGTAGCTCTTCATGCCCTTGAACTTGGTCTGCTTGGTGGGGTCGTCG,Promoter (<=1kb),13,113592179,113618564,26386,2,Snx18-201,981,Snx18-201;Snx18-202;Snx18-203,Snx18;Snx18;Snx18,0;-3893;-3520,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,170625,ENSMUSG00000042364,conserved gene and region,13,113617579,113618748,1170,*,1170,155,0.732478633,0.987691302,0.132478633,1.76E-138,CpGisland,TRUE,U4,Pr-F
21597,cg05661521,-0.00000178,0.00000327,-0.545287459,0.585947935,loss,ns,-0.00000592,0.00000556,-1.064471808,0.287943438,neg,ns,-0.006373419,0.001628476,-3.913731624,0.000111758,neg,ns,3.951721148,0.000095,0.000056,1.695748792,0.090937461,pos,ns,0.888817999,Usp19,Usp19_Exon,9,108495016,108495065,108495064,108495065,50,-,TCATTCCCCCTTTTTAAGGTGCAGTGGGTGGTGCAAAGGTTGCCGTGCCG,"Exon (Usp19-201/Usp19, exon 11 of 27)",9,108490602,108501699,11098,1,Usp19-201,4414,Lamb2-201;Usp19-201;Usp19-203;Usp19-202;Usp19-210;Usp19-204;Usp19-205;Usp19-208;Usp19-206;Usp19-207;Usp19-212;Usp19-214;Usp19-216;Usp19-213;Usp19-215;Usp19-209,Lamb2;Usp19;Usp19;Usp19;Usp19;Usp19;Usp19;Usp19;Usp19;Usp19;Usp19;Usp19;Usp19;Usp19;Usp19;Usp19,15159;0;0;0;0;0;2323;1549;0;0;0;-471;-1282;-1924;-2024;-3638,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,Exon,3,3,71472,ENSMUSG00000006676,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2199,cg10314686,-0.000000443,0.00000183,-0.241696157,0.809175407,loss,ns,0.00000331,0.00000311,1.064465376,0.287946346,pos,ns,-0.0000228,0.000911377,-0.025039947,0.980039211,neg,ns,0.008756548,0.000018,0.0000313,0.575029658,0.565688339,pos,ns,0.963806527,Gm6369,Gm6369_Intron,3,18439076,18439125,18439076,18439077,50,-,CGCCATATGTGAAGCTGCAGGAAAACAGATGCTGTTTTTCCATTTGTGAA,"Intron (Gm30667-201/Gm30667-201, intron 2 of 5)",3,18533875,18534286,412,1,Gm6369-201,-94799,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,3,622921,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11655,cg04444761,-0.0000256,0.0000078,-3.282367811,0.00114694,loss,ns,0.0000141,0.0000133,1.064465199,0.287946426,pos,ns,0.000343725,0.003881965,0.08854405,0.929501448,pos,ns,0.031749929,-0.000188653,0.0001335,-1.413123386,0.158622714,neg,ns,0.071193469,Trib1,Trib1_fiveUTR,15,59648513,59648562,59648513,59648514,50,+,CGTCGCAGCCACCTCATTGCACAACCCGGCTTCCCAACTGTTTACACAGC,Promoter (<=1kb),15,59648350,59657099,8750,1,Trib1-201,163,Trib1-201;Trib1-202,Trib1;Trib1,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,5,211770,ENSMUSG00000032501,conserved gene but different region,15,59648475,59649674,1200,*,1200,108,0.6525,0.845621819,0.09,1.67E-76,CpGisland,TRUE,U1,Pr-A
18900,cg10190905,-0.00000392,0.00000309,-1.268052668,0.205730666,loss,ns,-0.00000559,0.00000526,-1.064402236,0.28797489,neg,ns,-0.000788206,0.001539697,-0.51192302,0.60906937,neg,ns,0.21533324,0.0000723,0.000053,1.365932154,0.172950387,pos,ns,0.913136272,Dach1,Dach1_Intron,14,97868352,97868401,97868352,97868353,50,-,CGCGAAGGTGAAAAGGATAATCAGTACAGTCACTGGTCCGTGTTTCCTAA,"Intron (Dach1-201/Dach1, intron 6 of 10)",14,97786853,98169543,382691,2,Dach1-201,301142,Dach1-201;Dach1-202;Dach1-203,Dach1;Dach1;Dach1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,76,13134,ENSMUSG00000055639,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9829,cg13284386,0.000092,0.0000108,8.53922622,6.17E-16,gain,yes,-0.0000195,0.0000183,-1.064365583,0.287991461,neg,ns,0.026430183,0.005363647,4.927651843,0.00000136,pos,ns,5.867325749,-0.000435491,0.000184455,-2.36095762,0.018846431,neg,ns,0.675670718,Rap2c,Rap2c_Exon,X,51015028,51015077,51015076,51015077,50,+,AACACTGATCTTGCTTCTCCGGCAGGGATGAATAGTTCATTTGCCTGACG,"Exon (Rap2c-201/Rap2c, exon 2 of 3)",20,51003912,51018018,14107,2,Rap2c-201,2941,Rap2c-201,Rap2c,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,6,72065,ENSMUSG00000050029,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1589,cg00057767,-0.000017,0.00000522,-3.255937038,0.001255291,loss,ns,-0.00000944,0.00000887,-1.064333858,0.288005805,neg,ns,-0.004573192,0.002599716,-1.759112381,0.079544926,neg,ns,1.099387519,0.0000795,0.0000894,0.888808381,0.374795217,pos,ns,0.872766114,Zfp521,Zfp521_Intron,18,13798444,13798493,13798492,13798493,50,+,CTTTTCACCCTACTCTTTTAACACATCATGTATGCACTGAGCAATCTTCG,"Intron (Zfp521-201/Zfp521, intron 5 of 7)",18,13687013,13972787,285775,2,Zfp521-201,174294,Zfp521-201;Zfp521-205;Zfp521-204,Zfp521;Zfp521;Zfp521,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,81,225207,ENSMUSG00000024420,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27103,cg01160956,0.00000282,0.00000497,0.567393415,0.570857575,gain,ns,0.00000898,0.00000844,1.064263313,0.288037701,pos,ns,0.004032315,0.002471901,1.631260829,0.10385075,pos,ns,0.983590362,-0.000149202,0.000085,-1.755139041,0.080223302,neg,ns,0.908170301,Lrrc7,Lrrc7_Exon,3,158148646,158148695,158148694,158148695,50,+,AGGAGATACATCTTCTTGTCCATTGTCTAAAATGTTGCTTTGCTGGGACG,"Exon (Lrrc7-206/Lrrc7, exon 21 of 25)",3,158082891,158353433,270543,2,Lrrc7-206,204738,Lrrc7-206;Lrrc7-205;Lrrc7-204;Lrrc7-207;Lrrc7-201,Lrrc7;Lrrc7;Lrrc7;Lrrc7;Lrrc7,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,10,242274,ENSMUSG00000028176,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21032,cg04181061,-0.00000529,0.00000397,-1.331356322,0.184049997,loss,ns,0.00000718,0.00000675,1.06410829,0.288107803,pos,ns,0.003026923,0.001976079,1.531782534,0.126595939,pos,ns,0.897580225,-0.000130433,0.000068,-1.919347181,0.055858202,neg,ns,0.915998632,Vrk1,Vrk1_Intergenic_downstream,12,106129453,106129502,106129501,106129502,50,-,TTCTGCTTTTTAATTTCTTGCATACATTTGCATATTAATTTTGCCCGTCG,Distal Intergenic,12,106030717,106075409,44693,1,Vrk1-204,98785,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,29,37,22367,ENSMUSG00000021115,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8641,cg25528426,0.0000936,0.0000155,6.031480158,4.62E-09,gain,yes,-0.0000281,0.0000264,-1.064005607,0.288154242,neg,ns,0.027542262,0.007724924,3.565376338,0.000420646,pos,ns,3.376083233,-0.000549966,0.00026566,-2.070190265,0.039262306,neg,ns,0.467259549,Btrc,Btrc_Intron,19,45476266,45476315,45476314,45476315,50,-,AGAGATCGGCAGGAGTCCTACTTGCCTAATCTTACCGGTGGGAGCAAGCG,"Intron (Btrc-204/Btrc, intron 1 of 2)",19,45363734,45507736,144003,1,Btrc-204,112532,Btrc-204;Btrc-201;Btrc-210;Btrc-202;Btrc-203;Btrc-209,Btrc;Btrc;Btrc;Btrc;Btrc;Btrc,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,63,98,12234,ENSMUSG00000025217,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
6033,cg13188335,-0.0000069,0.0000028,-2.461054371,0.014397581,loss,ns,-0.00000507,0.00000476,-1.063899125,0.288202405,neg,ns,-0.001922529,0.001395131,-1.378027589,0.169188613,neg,ns,0.771628869,-0.000051,0.000048,-1.063466559,0.288398115,neg,ns,0.928910312,Wwc1,Wwc1_Exon,11,35875901,35875950,35875949,35875950,50,+,GTCTTGGCCACCTCATCCTCGTGGATGGTGGTGATGCAGCCTGAGGGCCG,"Exon (Wwc1-201/Wwc1, exon 11 of 23)",11,35838400,35980527,142128,2,Wwc1-201,104577,Wwc1-201;Wwc1-202,Wwc1;Wwc1,0;-189,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,211652,ENSMUSG00000018849,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11291,cg16149925,0.000000646,0.00000149,0.434354391,0.66433328,gain,ns,-0.00000269,0.00000253,-1.063791617,0.288251037,neg,ns,-0.000051,0.000739763,-0.068954903,0.945069973,neg,ns,0.024536035,0.00000619,0.0000254,0.243334715,0.807907054,pos,ns,0.971845715,Mipol1,Mipol1_Intron,12,57331895,57331944,57331895,57331896,50,+,CGAATGAAATTACTTGAGGTTCTAAAGATTTAAAAAGCGAACTCATTTTG,"Intron (Mipol1-207/Mipol1, intron 4 of 6)",12,57230434,57354220,123787,1,Mipol1-207,101461,Mipol1-207;Mipol1-205;Mipol1-201;Mipol1-209;Mipol1-208;Mipol1-203;Mipol1-202,Mipol1;Mipol1;Mipol1;Mipol1;Mipol1;Mipol1;Mipol1,0;0;0;0;0;0;-485,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,7,73490,ENSMUSG00000047022,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17354,cg13484249,0.00000113,0.00000406,0.277976594,0.781215631,gain,ns,0.00000734,0.0000069,1.06373833,0.288275144,pos,ns,0.006279426,0.00202092,3.10721093,0.002063493,pos,ns,2.685396925,-0.00019487,0.0000695,-2.80390666,0.005367187,neg,ns,0.919887272,Agap1,Agap1_Intron,1,89824258,89824307,89824306,89824307,50,-,AGTGTTAGTATCAGGTGTAATGATCTGTAGCCAAATACAATAGTGTGCCG,"Intron (Agap1-201/Agap1, intron 13 of 17)",1,89454806,89897617,442812,1,Agap1-201,369452,Agap1-201;Agap1-204;Agap1-202;Agap1-205,Agap1;Agap1;Agap1;Agap1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,29,347722,ENSMUSG00000055013,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3552,cg19461192,0.000000543,0.00000206,0.263970163,0.791978303,gain,ns,-0.00000372,0.0000035,-1.063726749,0.288280384,neg,ns,-0.000994028,0.001024472,-0.97028264,0.332662054,neg,ns,0.477996736,0.0000294,0.0000352,0.833889002,0.404985614,pos,ns,0.956080287,Agap3,Agap3_Intron,5,24490596,24490645,24490644,24490645,50,-,CCACGCTCTGAACTCGTTGTTAATTCCAGTAATAAAACGAGATGAGAACG,"Intron (Agap3-201/Agap3, intron 10 of 17)",5,24452177,24502047,49871,1,Agap3-201,38419,Agap3-201;Agap3-202,Agap3;Agap3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,13,213990,ENSMUSG00000023353,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14260,cg02675830,-0.00000634,0.00000493,-1.286340922,0.199283965,loss,ns,0.00000891,0.00000838,1.063334415,0.28845792,pos,ns,0.004623157,0.002454349,1.883658877,0.060546967,pos,ns,1.217907606,-0.000209663,0.0000844,-2.484010086,0.013519173,neg,ns,0.916742876,Chic2,Chic2_Exon,5,75006723,75006772,75006723,75006724,50,+,CGAAAAATCGGTGTCTTTGGTAAAAATTCTATGAGGATGACCTGTAAAAG,"Exon (Chic2-201/Chic2, exon 6 of 6)",5,74997988,75044774,46787,2,Chic2-201,38002,Chic2-201;Chic2-202,Chic2;Chic2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,10,74277,ENSMUSG00000029229,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10195,cg27009703,0.000098,0.00000815,12.02404381,1.36E-27,gain,yes,-0.0000147,0.0000138,-1.063091394,0.288567928,neg,ns,0.003269694,0.004054845,0.806367228,0.4206493,pos,ns,0.376079829,0.000403373,0.000139446,2.892684765,0.004090024,pos,ns,0.108222169,Hoxa9,Hoxa9_Exon,6,52225922,52225971,52225922,52225923,50,+,CGTCGCCTTGGACTGGAAGCTGCACGGGCTGAAGTCGGGGTGCTCGGCCA,"Exon (Hoxa9-201/Hoxa9, exon 1 of 2)",6,52223100,52227370,4271,2,Hoxa9-201,1399,Hoxa7-204;Hoxa9-201;Hoxa9-203;Hoxa9-202;Hoxa9-204;Hoxa9-205,Hoxa7;Hoxa9;Hoxa9;Hoxa9;Hoxa9;Hoxa9,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,14,15405,ENSMUSG00000038227,mapped to different genes,6,52225670,52226051,382,*,382,36,0.678010471,0.824460432,0.094240838,1.10E-26,CpGisland,TRUE,NA,NRS
20545,cg18380761,-0.00000315,0.00000119,-2.634186943,0.008857273,loss,ns,-0.00000216,0.00000203,-1.063078587,0.288573726,neg,ns,-0.000510041,0.000594601,-0.857786528,0.391673036,neg,ns,0.407076325,-0.0000113,0.0000204,-0.551038989,0.582003862,neg,ns,0.969593229,Trim33,Trim33_threeUTR,3,103352120,103352169,103352120,103352121,50,-,CGTTTGATCTTCAAGAACTGTGAAAGGTTTAATGAAGTATGTTAACTTCC,3' UTR,3,103279293,103358775,79483,1,Trim33-201,72827,Trim33-201;Trim33-202;Trim33-206;Trim33-204,Trim33;Trim33;Trim33;Trim33,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,5,94093,ENSMUSG00000033014,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26740,cg02407848,9.32E-08,0.00000166,0.056026356,0.955356904,gain,ns,0.00000301,0.00000283,1.062888292,0.288659886,pos,ns,0.000618103,0.000828287,0.746241934,0.456086802,pos,ns,0.340952495,-0.0000569,0.0000285,-1.998002722,0.04658971,neg,ns,0.960409687,Huwe1,Huwe1_Exon,X,151923533,151923582,151923581,151923582,50,+,AGGCTGAGGCTGATGCCATTATACAAATGGTACGTGAGGGTCAAAGGGCG,"Exon (Huwe1-201/Huwe1, exon 72 of 83)",20,151803327,151935417,132091,1,Huwe1-201,120206,Huwe1-201;Huwe1-202;Huwe1-209;Huwe1-205;Huwe1-213,Huwe1;Huwe1;Huwe1;Huwe1;Huwe1,0;0;2251;0;-676,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,22,28,59026,ENSMUSG00000025261,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25924,cg19209792,-6.82E-08,0.00000284,-0.023996898,0.980870523,loss,ns,0.00000513,0.00000483,1.062873876,0.288666414,pos,ns,0.000473179,0.001414733,0.334465394,0.738254572,pos,ns,0.131793855,-0.000028,0.0000487,-0.575647334,0.565271202,neg,ns,0.930717797,Psmd13,Psmd13_threeUTR,7,140889415,140889464,140889415,140889416,50,+,CGCGTCCTACTACAAAGATGCTCTGCGGTTTTTGGGCTGTGTTGACATCA,3' UTR,7,140881968,140898642,16675,1,Psmd13-201,7447,Gm15542-201;Psmd13-201;Psmd13-207;Psmd13-205;Psmd13-203;Psmd13-208;Psmd13-206;Psmd13-209;Psmd13-211;Psmd13-204;Psmd13-202,Gm15542;Psmd13;Psmd13;Psmd13;Psmd13;Psmd13;Psmd13;Psmd13;Psmd13;Psmd13;Psmd13,-1423;0;0;6986;0;0;6948;0;0;0;-925,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,23997,ENSMUSG00000025487,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24157,cg22797977,0.0000269,0.000011,2.456352826,0.014583606,gain,ns,0.0000198,0.0000186,1.062709611,0.288740805,pos,ns,-0.008309074,0.005459801,-1.521863741,0.129062585,neg,ns,0.889199641,0.000534824,0.000187762,2.848414797,0.004687486,pos,ns,0.316026016,Gm6905,Gm6905_Intergenic_downstream,7,123031254,123031303,123031302,123031303,50,+,ACATGATGGGGGACCTGTATCATGTGATGGCTCCGGTGATGTTGGAGGCG,Distal Intergenic,7,123010112,123010622,511,1,Gm6905-201,21142,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,3,628696,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
759,cg06734921,0.0000241,0.00000822,2.938263272,0.003548212,gain,ns,-0.0000148,0.000014,-1.062680973,0.288753776,neg,ns,0.010362417,0.004090324,2.533397454,0.011788882,pos,ns,1.928527377,-0.000247425,0.000140666,-1.758955723,0.079571583,neg,ns,0.079802294,Hey1,Hey1_Exon,3,8666288,8666337,8666336,8666337,50,+,CTGGGTACCAGCCTTCTCAGCTCAGACAAACTGTTATTGATCCGGTCTCG,Promoter (<=1kb),3,8663359,8667256,3898,2,Hey1-201,919,Hey1-201;Hey1-203;Hey1-202;Hey1-204,Hey1;Hey1;Hey1;Hey1,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,15213,ENSMUSG00000040289,conserved gene and region,3,8666330,8666350,21,*,21,5,0.714285714,1.875,0.238095238,0.0000059,CpGisland,TRUE,U3,Pr-B
5261,cg26517714,0.0000781,0.00000941,8.302668236,3.19E-15,gain,yes,-0.000017,0.000016,-1.062592996,0.288793624,neg,ns,0.007049127,0.004681423,1.505765895,0.133145519,pos,ns,0.875673446,-0.000149935,0.000160994,-0.931307346,0.352419308,neg,ns,0.091173481,Tlx3,Tlx3_fiveUTR,11,33203583,33203632,33203583,33203584,50,+,CGACAGGCTCTGTGTCATCTTTCTTGAACCGAACCTGGAGTTTCCGCTGC,Promoter (<=1kb),11,33200752,33203589,2838,2,Tlx3-201,0,Tlx3-201,Tlx3,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,20,27140,ENSMUSG00000040610,conserved gene but different region,11,33202715,33203697,983,*,983,96,0.695829095,0.806819251,0.097660224,1.02E-71,CpGisland,TRUE,NA,NRS
21814,cg22552125,0.000118912,0.0000142,8.345037689,2.38E-15,gain,yes,-0.0000257,0.0000242,-1.062528299,0.288822931,neg,ns,0.020115663,0.007092107,2.836345134,0.004863614,pos,ns,2.313040899,-0.000786889,0.000243897,-3.226317888,0.001387955,neg,ns,0.264612939,Lmo1,Lmo1_Intergenic_upstream,7,109191737,109191786,109191737,109191738,50,+,CGTCTGGGTGCCAGCCCTTGAAAGTGGAAAATTAATGACCTTAATTCCCA,Distal Intergenic,7,109138675,109175207,36533,2,Lmo1-202,-16530,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,34,66,109594,ENSMUSG00000036111,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25657,cg25555461,-0.00000566,0.0000056,-1.011249091,0.312685865,loss,ns,0.0000101,0.00000951,1.062395924,0.2888829,pos,ns,-0.004536705,0.002787341,-1.627609887,0.104623536,neg,ns,0.980370605,0.0000192,0.0000959,0.200452877,0.84125785,pos,ns,0.80716381,1110002E22Rik,1110002E22Rik_Exon,3,138066617,138066666,138066665,138066666,50,+,CAACGTGCGTGCAAAGCAAAACATTATTTATGCTGCCAAGCATGAAGGCG,"Exon (1110002E22Rik-201/1110002E22Rik, exon 1 of 2)",3,138065052,138081506,16455,1,1110002E22Rik-201,1565,1110002E22Rik-201;1110002E22Rik-202;Gm5105-201,1110002E22Rik;1110002E22Rik;Gm5105,0;-4931;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,7,102634333,ENSMUSG00000090066,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1675,cg21502154,-0.00000427,0.00000287,-1.489724562,0.137313357,loss,ns,-0.00000517,0.00000487,-1.062365309,0.288896771,neg,ns,-0.003081222,0.00142614,-2.160533047,0.031497317,neg,ns,1.501726439,0.000104497,0.000049,2.130633677,0.033906193,pos,ns,0.061683192,Sesn3,Sesn3_Intron,9,14277168,14277217,14277216,14277217,50,-,GACTGATAGAAAGTTTACTCCAGTATTGTTTAGCTTACTTGGCTTAATCG,"Intron (Sesn3-207/Sesn3, intron 1 of 8)",9,14275067,14325817,50751,1,Sesn3-207,2101,Sesn3-207;Sesn3-201;Sesn3-205;Sesn3-204,Sesn3;Sesn3;Sesn3;Sesn3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,75747,ENSMUSG00000032009,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12283,cg05443339,-0.00000276,0.00000408,-0.677272836,0.498737969,loss,ns,0.00000736,0.00000693,1.062100254,0.289016877,pos,ns,0.005819279,0.002030509,2.86592098,0.004442325,pos,ns,2.352389682,-0.000259268,0.0000698,-3.712894687,0.000242899,neg,ns,0.896577458,Fign,Fign_Intergenic_downstream,2,63820280,63820329,63820328,63820329,50,-,CATTAAAATCTCTGCAGCTAATATGGGATTCAGAATTGGACGGTAAGTCG,Distal Intergenic,2,63980447,64097988,117542,2,Fign-202,277708,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,28,84,60344,ENSMUSG00000075324,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20905,cg07852259,0.0000347,0.00000807,4.300864308,0.0000228,gain,ns,0.0000146,0.0000137,1.061728036,0.2891856,pos,ns,-0.00320595,0.004017464,-0.798003541,0.4254793,neg,ns,0.371121563,0.000405838,0.00013816,2.937441358,0.003557372,pos,ns,0.107755691,Pax6,Pax6_Exon,2,105685822,105685871,105685870,105685871,50,+,GCAACAGATGGGCGCAGACGGCATGTATGATAAACTAAGGATGTTGAACG,"Exon (Pax6-206/Pax6, exon 7 of 13)",2,105668900,105697364,28465,1,Pax6-206,16922,Pax6-206;Pax6-207;Pax6-210;Pax6-214;Pax6-208;Pax6-202;Pax6-205;Pax6-225;Pax6-204;Pax6-201;Pax6-203;Pax6-224;Pax6-219;Pax6-221;Pax6-213;Pax6-211;Pax6-222;Pax6-212;Pax6-215;Pax6-223;Pax6-209;Pax6-216,Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,31,78,18508,ENSMUSG00000027168,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
9193,cg19965070,0.00000101,0.00000511,0.196988704,0.843965466,gain,ns,-0.00000922,0.00000868,-1.061712832,0.289192493,neg,ns,-0.006436905,0.002544038,-2.530192014,0.011894885,neg,ns,1.924639742,-0.000126,0.0000875,-1.440173419,0.150827474,neg,ns,0.843078607,Cadm1,Cadm1_Intergenic_upstream,9,47506139,47506188,47506139,47506140,50,+,CGGAAACTGCAGCTTTCTCGTTAATGTGCAATCCTGAAACGGTGATGTAT,Distal Intergenic,9,47530173,47853385,323213,1,Cadm1-204,-23985,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,18,77,54725,ENSMUSG00000032076,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21878,cg25700772,-0.00000312,0.00000138,-2.264011105,0.024264179,loss,ns,0.00000248,0.00000234,1.061643728,0.289223826,pos,ns,0.000555629,0.000684942,0.811206417,0.417869521,pos,ns,0.378959305,-0.0000217,0.0000236,-0.920743389,0.357900369,neg,ns,0.957574364,Rnf11,Rnf11_Exon,4,109454330,109454379,109454378,109454379,50,+,CAGTCATCTATACAGTCCAGGTGATAGATGTGCATGCACGGCAGAAATCG,"Exon (Rnf11-201/Rnf11, exon 3 of 3)",4,109451098,109476675,25578,2,Rnf11-201,22296,Rnf11-201;Rnf11-202;Rnf11-203,Rnf11;Rnf11;Rnf11,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,29864,ENSMUSG00000028557,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10814,cg23463050,0.000000159,0.00000215,0.074180337,0.940914734,gain,ns,-0.00000388,0.00000365,-1.061638746,0.289226084,neg,ns,-0.001971089,0.001070086,-1.841991051,0.066431476,neg,ns,1.177626099,0.0000224,0.0000368,0.60734282,0.544068031,pos,ns,0.958085462,Pdlim7,Pdlim7_threeUTR,13,55507034,55507083,55507082,55507083,50,-,TGCACGTTGAGCACGTGGGCAGAGCGCTGGTGGTGCCAGTCCCGGAGGCG,3' UTR,13,55495795,55513438,17644,2,Pdlim7-211,6355,Pdlim7-211;Pdlim7-209;Pdlim7-204;Pdlim7-201;Pdlim7-203;Pdlim7-202;Pdlim7-206;Pdlim7-205;Pdlim7-208;Pdlim7-207;Pdlim7-210,Pdlim7;Pdlim7;Pdlim7;Pdlim7;Pdlim7;Pdlim7;Pdlim7;Pdlim7;Pdlim7;Pdlim7;Pdlim7,0;0;0;0;0;0;0;1937;6593;6338;5626,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,2,67399,ENSMUSG00000021493,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22860,cg18464207,-0.000000186,0.00000126,-0.14772663,0.882654551,loss,ns,-0.00000228,0.00000214,-1.061588166,0.289249019,neg,ns,-0.0000671,0.000627846,-0.106810341,0.915008532,neg,ns,0.038574856,-0.0000221,0.0000216,-1.025205228,0.306065675,neg,ns,0.047393296,Sox6,Sox6_Exon,7,116034511,116034560,116034559,116034560,50,+,TCCCGTCGTGCAACATCAGAAAGTGAGTGGCCAGGGCATTGATCTGAGCG,Promoter (<=1kb),7,115801599,116034513,232915,2,Sox6-208,0,1110004F10Rik-205;Sox6-210;Sox6-202;Sox6-204;Sox6-209;Sox6-214;Sox6-208,1110004F10Rik;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6,-4837;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,57,20679,ENSMUSG00000051910,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
7879,cg13650267,-0.0000605,0.0000122,-4.95081237,0.00000122,loss,yes,0.0000221,0.0000208,1.061524287,0.289277986,pos,ns,-0.013281255,0.00608609,-2.182231224,0.029842894,neg,ns,1.525159063,0.000288521,0.0002093,1.378503909,0.169041747,pos,ns,0.86046355,Hif1an,Hif1an_Intergenic_downstream,19,44591386,44591435,44591386,44591387,50,+,CGTTTCACTCCATTTCGGAGAAAACGGGAAGTCGGTAATTTTAAAAAATA,Distal Intergenic,19,44562850,44576274,13425,1,Hif1an-201,28536,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,31,319594,ENSMUSG00000036450,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17971,cg12958309,-0.00000959,0.00000846,-1.13340715,0.257919089,loss,ns,-0.0000153,0.0000144,-1.061489589,0.289293721,neg,ns,-0.011806616,0.004210215,-2.804278299,0.005361159,neg,ns,2.270741302,0.000313534,0.000144789,2.16545605,0.031115174,pos,ns,0.860432974,Gm31663,Gm31663_Intron,7,93023579,93023628,93023579,93023580,50,-,CGGTTTAGGTACTTTCTATAAAAGGGATCTTTTAATGACAAAACTAATGT,"Intron (Gm26862-201/Gm26862-201, intron 1 of 3)",7,92982052,93000818,18767,1,Gm31663-201,41576,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,3,102633966,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25286,cg27097959,0.00000628,0.00000455,1.382630059,0.167773522,gain,ns,-0.0000082,0.00000772,-1.061442916,0.289314888,neg,ns,-0.005163096,0.002262108,-2.282426822,0.023141257,neg,ns,1.635613055,0.00000245,0.0000778,0.031547514,0.974853201,pos,ns,0.886006715,Ppfia4,Ppfia4_Exon,1,134317135,134317184,134317183,134317184,50,-,GGAGAAGTCTCACATTTTATGGTGGCTTTATCCTCTCGGTTCTCTTCCCG,"Exon (Ppfia4-201/Ppfia4, exon 16 of 29)",1,134296783,134332928,36146,2,Ppfia4-201,15744,Ppfia4-201;Ppfia4-203;Ppfia4-205,Ppfia4;Ppfia4;Ppfia4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,68507,ENSMUSG00000026458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6652,cg25260948,0.00000182,0.00000273,0.66631448,0.505705668,gain,ns,-0.00000493,0.00000464,-1.061281238,0.289388218,neg,ns,-0.000352597,0.001359793,-0.259301961,0.795574374,neg,ns,0.099319214,0.0000726,0.0000468,1.552878219,0.121472516,pos,ns,0.943596391,Uri1,Uri1_Intergenic_downstream,7,37922020,37922069,37922020,37922021,50,-,CGCAGACTAAATGGCTGTGTGGGTGAATCAATTATTGCAAGGCCCCGAGT,Distal Intergenic,7,37961301,37962528,1228,2,Uri1-203,40508,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,19,27,19777,ENSMUSG00000030421,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27696,cg23829949,0.0000356,0.00000673,5.285852601,0.000000237,gain,yes,0.0000121,0.0000114,1.061238226,0.289407728,pos,ns,-0.006639061,0.00335051,-1.981507688,0.048417524,neg,ns,1.314997421,0.000191336,0.000115224,1.66055636,0.097813648,pos,ns,0.686437493,Zbtb18,Zbtb18_fiveUTR,1,177444707,177444756,177444755,177444756,50,-,CATCATCTCCACTTTGCATCTGTCTCTCTTAGTCTGCTTTTTTTCCACCG,Promoter (<=1kb),1,177444737,177447518,2782,1,Zbtb18-205,0,Zbtb18-209;Zbtb18-211;Zbtb18-208;Zbtb18-203;Zbtb18-202;Zbtb18-204;Zbtb18-206;Zbtb18-210;Zbtb18-205;Zbtb18-212;Zbtb18-207;Zbtb18-201,Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,22,30928,ENSMUSG00000063659,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11683,cg15417124,-0.000000506,0.00000186,-0.271574514,0.786129962,loss,ns,-0.00000336,0.00000317,-1.061226238,0.289413166,neg,ns,-0.001434289,0.00092739,-1.546586933,0.122983111,neg,ns,0.910154527,0.0000335,0.0000319,1.050612699,0.294254815,pos,ns,0.957358083,Baz2b,Baz2b_Exon,2,59907565,59907614,59907613,59907614,50,-,AAATCAGCCAGCCTGGTTACAGCTATATCTAGGGGGTTGTCACTCTTCCG,"Exon (Baz2b-202/Baz2b, exon 30 of 35)",2,59899363,60125697,226335,2,Baz2b-202,218083,Baz2b-202;Baz2b-201;Baz2b-204,Baz2b;Baz2b;Baz2b,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,9,407823,ENSMUSG00000026987,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23024,cg15956344,0.000117074,0.000011,10.59634152,1.36E-22,gain,yes,-0.0000199,0.0000188,-1.061196524,0.289426645,neg,ns,0.016288538,0.005498983,2.962099851,0.003291773,pos,ns,2.482570165,-0.000468436,0.00018911,-2.477060524,0.01377994,neg,ns,0.094684979,Gpc6,Gpc6_Exon,14,116926053,116926102,116926101,116926102,50,-,AAGGGATTCAGCCTGGCGGACATCCCCTACCAGGAGATCGCAGGTAAGCG,Promoter (<=1kb),14,116925315,117627198,701884,1,Gpc6-203,738,Gpc6-203;Gpc6-202;Gpc6-204;Gpc6-201,Gpc6;Gpc6;Gpc6;Gpc6,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,5,23888,ENSMUSG00000058571,conserved gene but different region,14,116925785,116926143,359,*,359,35,0.701949861,0.804417414,0.097493036,1.68E-26,CpGisland,TRUE,NA,NRS
12660,cg11805060,0.0000075,0.00000402,1.868029534,0.062701231,gain,ns,0.00000724,0.00000682,1.060968329,0.289530175,pos,ns,0.005294687,0.001998359,2.649517319,0.00847393,pos,ns,2.071915129,-0.000124332,0.0000687,-1.809163958,0.071394129,neg,ns,0.922199417,Herc1,Herc1_Exon,9,66448412,66448461,66448460,66448461,50,-,TTAGAGTTGGAGGTCGGTGTGTTCACAAGCAAACTGGGCGCCATGCCACG,"Exon (Herc1-201/Herc1, exon 37 of 78)",9,66350526,66508775,158250,1,Herc1-201,97886,Herc1-201;Herc1-206;Herc1-204,Herc1;Herc1;Herc1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,15,15,235439,ENSMUSG00000038664,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3474,cg11825056,0.0000014,0.00000363,0.385120482,0.700412256,gain,ns,0.00000654,0.00000617,1.060966914,0.289530817,pos,ns,-0.000038,0.001806464,-0.021009532,0.983251569,neg,ns,0.007335352,-0.0000332,0.0000621,-0.533842959,0.593832769,neg,ns,0.887532729,Bcl11a,Bcl11a_Exon,11,24163514,24163563,24163562,24163563,50,+,GAGATGGCCCTGGCCACCCATCACCCGAGTGCCTTTGACAGGGTGCTGCG,"Exon (Bcl11a-201/Bcl11a, exon 4 of 5)",11,24078056,24173194,95139,1,Bcl11a-201,85458,Bcl11a-201;Bcl11a-203;Bcl11a-202;Bcl11a-204;Bcl11a-206,Bcl11a;Bcl11a;Bcl11a;Bcl11a;Bcl11a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,51,98,14025,ENSMUSG00000000861,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24222,cg26113488,0.000002,0.00000189,1.056700054,0.291471273,gain,ns,0.0000034,0.00000321,1.060961417,0.289533312,pos,ns,0.003335322,0.000940105,3.547817392,0.000448523,pos,ns,3.348215207,-0.000093,0.0000323,-2.875477805,0.004313471,neg,ns,0.064145646,Gm12902,Gm12902_Intergenic_downstream,4,123991027,123991076,123991075,123991076,50,+,CCTAGGAGCAGTTATTCCACAACTGTCTGCGGGCACAATGAACTCCCCCG,Distal Intergenic,4,123926234,123926555,322,1,Gm12902-201,64793,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,34,34,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26036,cg04907802,-0.000000113,0.00000334,-0.033941794,0.972945409,loss,ns,-0.00000603,0.00000568,-1.06091616,0.289553848,neg,ns,0.002461482,0.001664189,1.479088482,0.14013208,pos,ns,0.85346243,-0.000120986,0.0000572,-2.11398326,0.035315041,neg,ns,0.935250567,Kcnq1,Kcnq1_Intron,7,143325264,143325313,143325264,143325265,50,-,CGCACACAGCTCCCAGCCTGGCTTCCCTTGAACAAACATATTTATTGTGG,"Intron (Kcnq1-201/Kcnq1, intron 11 of 15)",7,143107254,143427042,319789,1,Kcnq1-201,218010,Kcnq1-201;Kcnq1-202,Kcnq1;Kcnq1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,9,16535,ENSMUSG00000009545,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6323,cg07356745.2,-0.0000119,0.00000446,-2.670839114,0.007965555,loss,ns,0.00000803,0.00000757,1.060709593,0.289647592,pos,ns,0.000290064,0.00221873,0.130734083,0.896070466,pos,ns,0.047657837,-0.0000657,0.0000763,-0.861013779,0.38989591,neg,ns,0.90091344,Ccser2,Ccser2_Exon,14,36890320,36890369,36890368,36890369,50,+,GGAGTGAGAGACACAGACTCACTCTGTCTGCGGTGCGGTGGAACAGTCCG,"Exon (Ccser2-202/Ccser2, exon 10 of 11)",14,36874936,36968687,93752,2,Ccser2-201,78318,Ccser2-201;Ccser2-202;Ccser2-208;Ccser2-209;Ccser2-210;Ccser2-207;Ccser2-203;Ccser2-205;Ccser2-204,Ccser2;Ccser2;Ccser2;Ccser2;Ccser2;Ccser2;Ccser2;Ccser2;Ccser2,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,72972,ENSMUSG00000058690,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12709,cg27573809,-0.00000255,0.00000189,-1.347815766,0.178701764,loss,ns,0.00000341,0.00000322,1.060637689,0.289680228,pos,ns,-0.000227886,0.00094217,-0.241873335,0.809038235,neg,ns,0.092030953,-0.0000142,0.0000324,-0.439459255,0.660634981,neg,ns,0.959971404,Gm43516,Gm43516_Intergenic_upstream,3,66935408,66935457,66935456,66935457,50,+,CTTTAAATTGGAAATTATTACACATTAAAACCTCAACATGGGCCAGATCG,Distal Intergenic,3,66953541,66953862,322,1,Gm43516-201,-18084,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,11,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10836,cg02587674,-0.000000457,0.0000085,-0.053736382,0.957179809,loss,ns,-0.0000153,0.0000144,-1.060569763,0.289711061,neg,ns,-0.008615094,0.004231439,-2.035972457,0.042603,neg,ns,1.370559819,0.000166652,0.000145519,1.145223979,0.252999749,pos,ns,0.882405887,Neurod6,Neurod6_Intergenic_downstream,6,55579773,55579822,55579821,55579822,50,-,ATGCATATTCATCAGGCTATTGAAGTCTTTCCAGCCCAGCTTGATGAGCG,Distal Intergenic,6,55677822,55681263,3442,2,Neurod6-201,101490,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,16,11922,ENSMUSG00000037984,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5953,cg09143180,-0.00000864,0.00000201,-4.298994151,0.000023,loss,ns,-0.00000362,0.00000341,-1.060563476,0.289713915,neg,ns,-0.001568023,0.001000091,-1.567879503,0.117929407,neg,ns,0.928377885,0.0000926,0.0000344,2.691845854,0.0074917,pos,ns,0.950119848,Snhg4,Snhg4_Promoter,18,35548801,35548850,35548849,35548850,50,+,AGTGAAATCTCCTCTGTAATTTCCCATGTGTTCAGTTTAATGAATTTCCG,Promoter (4-5kb),18,35553404,35572285,18882,1,Snhg4-201,-4554,Snhg4-201;Snhg4-203;Snhg4-207;Snhg4-202;Snhg4-208;Snhg4-205;Snhg4-206;Snhg4-204,Snhg4;Snhg4;Snhg4;Snhg4;Snhg4;Snhg4;Snhg4;Snhg4,-4554;0;0;-4562;-4562;-4563;0;-4588,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,1,100503380,ENSMUSG00000117869,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16213,cg23012327,-0.000002,0.00000867,-0.230755544,0.817656935,loss,ns,0.0000156,0.0000147,1.0605313,0.289728521,pos,ns,0.005621553,0.004314811,1.302850479,0.193592762,pos,ns,0.713110884,-0.000133747,0.000148386,-0.901345078,0.368104601,neg,ns,0.725695524,Cacna1a,Cacna1a_Exon,8,84594146,84594195,84594146,84594147,50,+,CGCGATGCCTGGAACATCTTCGACTTTGTGACTGTTCTGGGCAGCATCAC,"Exon (Cacna1a-213/Cacna1a, exon 33 of 49)",8,84338639,84640246,301608,1,Cacna1a-213,255507,Cacna1a-213;Cacna1a-201;Cacna1a-202;Cacna1a-211,Cacna1a;Cacna1a;Cacna1a;Cacna1a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,12,12286,ENSMUSG00000034656,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17980,cg13970807,0.0000128,0.0000125,1.026079201,0.305654229,gain,ns,0.0000225,0.0000212,1.060450722,0.289765102,pos,ns,0.000729027,0.006224944,0.117113789,0.906845721,pos,ns,0.042466592,-0.0000747,0.000214075,-0.348824976,0.72745751,neg,ns,0.253250313,Car10,Car10_Exon,11,93100242,93100291,93100290,93100291,50,+,AGGTGCTTTTTCTTCTTCAAGCCAATTTCATCGTCTGCATATCAGGTACG,"Exon (Car10-204/Car10, exon 2 of 5)",11,93098404,93368999,270596,1,Car10-204,1838,Car10-207;Car10-204;Car10-205;Car10-201;Car10-203;Car10-202;Car10-206,Car10;Car10;Car10;Car10;Car10;Car10;Car10,2214;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,7,72605,ENSMUSG00000056158,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
2264,cg21799154,0.00000436,0.000000972,4.485522568,0.0000103,gain,ns,-0.00000175,0.00000165,-1.060342573,0.289814204,neg,ns,0.000375198,0.000483873,0.775404745,0.438691629,pos,ns,0.357840653,-0.0000239,0.0000166,-1.438177986,0.151392301,neg,ns,0.026340768,Meis1,Meis1_Intergenic_downstream,11,18878255,18878304,18878255,18878256,50,-,CGTGTAAAATGTTCTTAACGGAACCATTGAGCGAGTGCAATAAGGCGTGA,Distal Intergenic,11,18880668,19012002,131335,2,Meis1-203,133747,Meis1-206;Meis1-202;Meis1-209;Meis1-201;Meis1-203;Meis1-208;Meis1-207,Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1,0;0;0;0;0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,88,17268,ENSMUSG00000020160,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
17017,cg27513101,-0.00000113,0.0000103,-0.109115031,0.913181849,loss,ns,-0.0000186,0.0000176,-1.060185154,0.289885685,neg,ns,-0.002427699,0.005144424,-0.471908776,0.637323894,neg,ns,0.195639799,0.0000817,0.000176916,0.461556156,0.644723344,pos,ns,0.868193276,Zfp423,Zfp423_Intron,8,87873331,87873380,87873331,87873332,50,+,CGTGGTGCAATTACCCTTAGTCTCAAAAGGATTCTGCCAGGAGCTTGTCA,"Intron (Zfp423-202/Zfp423, intron 2 of 7)",8,87661810,87959595,297786,2,Zfp423-202,86215,Zfp423-202;Zfp423-201;Zfp423-207;Zfp423-205;Zfp423-204,Zfp423;Zfp423;Zfp423;Zfp423;Zfp423,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,42,53,94187,ENSMUSG00000045333,conserved gene and region,8,87873259,87873332,74,*,74,8,0.540540541,1.483709273,0.108108108,0.0000012,CpGisland,TRUE,U15,NS
14866,cg11341452,-0.00000296,0.00000221,-1.338599853,0.181681833,loss,ns,-0.00000398,0.00000375,-1.060169807,0.289892655,neg,ns,-0.001108942,0.001100067,-1.008067767,0.314208115,neg,ns,0.502782603,0.00000884,0.0000378,0.233671026,0.815394614,pos,ns,0.932628504,Phf12,Phf12_threeUTR,11,78024904,78024953,78024952,78024953,50,-,TGGACGGTGGGTTTCCCTCAGGCGACGTAAGTAACAGTCTTCCTGCTCCG,3' UTR,11,77982754,78026214,43461,1,Phf12-202,42150,Phf12-202;Phf12-201;Phf12-207;Phf12-206;Phf12-208;Phf12-205;Phf12-203;Phf12-204,Phf12;Phf12;Phf12;Phf12;Phf12;Phf12;Phf12;Phf12,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,11,27,268448,ENSMUSG00000037791,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26597,cg00855890,-0.000000369,0.000000276,-1.334610859,0.182983148,loss,ns,0.000000497,0.000000469,1.060059969,0.289942539,pos,ns,0.0000248,0.000137462,0.180082824,0.857205207,pos,ns,0.0669152,3.63E-08,0.00000473,0.00767543,0.99388089,pos,ns,0.99201845,Pex14,Pex14_Intron,4,148967340,148967389,148967340,148967341,50,+,CGACAGTAAACAAGCAATTTCAAATTAAACCGAAATGACGGCGGCTTCAT,"Intron (Gm17029-201/Gm17029-201, intron 2 of 2)",4,148960535,149099876,139342,2,Pex14-201,132487,Pex14-201;Pex14-202,Pex14;Pex14,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,41,48,56273,ENSMUSG00000028975,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22740,cg26075933,-0.00000632,0.0000072,-0.877245161,0.381032818,loss,ns,-0.000013,0.0000122,-1.05993715,0.289998325,neg,ns,-0.003190464,0.003584864,-0.889981874,0.374165759,neg,ns,0.426935959,0.0000358,0.000123283,0.290298793,0.771781758,pos,ns,0.802090844,Meis2,Meis2_Intron,2,115876078,115876127,115876126,115876127,50,-,ATCTGGCAAGGAGCAGCTGCTGATTTATAGAGTAGGACTTTGTTCTTCCG,"Intron (Meis2-201/Meis2, intron 9 of 11)",2,115863064,116065047,201984,2,Meis2-201,188920,Meis2-201;Meis2-203;Meis2-205;Meis2-206;Meis2-204;Meis2-202;Meis2-208;Meis2-216;Meis2-218;Meis2-214;Meis2-207;Meis2-215,Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,45,97,17536,ENSMUSG00000027210,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
86,cg21948029,-0.00000604,0.00000221,-2.729996799,0.006695623,loss,ns,-0.00000399,0.00000376,-1.059929422,0.290001835,neg,ns,0.0000311,0.001101723,0.028268555,0.977466149,pos,ns,0.009898274,-0.000042,0.0000379,-1.107913906,0.268757862,neg,ns,0.051959253,Plag1,Plag1_fiveUTR,4,3938307,3938356,3938307,3938308,50,+,CGCGGCGGGCCTGGAAATTGTTTCCTTACGCCTCTTTCCAGCAGCCATTG,Promoter (<=1kb),4,3900996,3938382,37387,2,Plag1-201,26,Chchd7-202;Chchd7-206;Chchd7-213;Chchd7-207;Chchd7-208;Chchd7-201;Chchd7-205;Chchd7-214;Chchd7-203;Chchd7-209;Chchd7-210;Chchd7-211;Chchd7-204;Plag1-201;Plag1-202;Plag1-204;Plag1-203,Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Plag1;Plag1;Plag1;Plag1,-532;-532;-534;-558;-558;-558;-558;-558;-564;-687;-1066;-1144;-2498;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,22,56711,ENSMUSG00000003282,conserved gene and region,4,3938107,3939194,1088,*,1088,119,0.706801471,0.896508745,0.109375,3.91E-95,CpGisland,TRUE,U1,Pr-A
3011,cg00851901,-0.00000921,0.00000209,-4.402281908,0.0000148,loss,ns,0.00000377,0.00000356,1.059905396,0.290012749,pos,ns,-0.001290752,0.00104157,-1.239237226,0.21619505,neg,ns,0.665154253,0.0000211,0.0000358,0.588262957,0.556784128,pos,ns,0.970465974,Lrmda,Lrmda_Intron,14,22378296,22378345,22378296,22378297,50,-,CGAAACAGGCCAGTGGAGGCTTCATCAAGAATGCTCATTCAGAATGATGA,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,358584,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206;Lrmda-202,Lrmda;Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14231,cg04121186,-0.000112407,0.000017,-6.629048837,1.50E-10,loss,yes,0.0000305,0.0000288,1.059754558,0.290081274,pos,ns,-0.025591367,0.008439518,-3.032325779,0.002631691,neg,ns,2.57976514,0.000739207,0.000290234,2.546930325,0.011350575,pos,ns,0.751652091,Onecut1,Onecut1_Exon,9,74855098,74855147,74855098,74855099,50,-,CGAAGGAAGGCACCAGCGAATAAATAATTAATACAGACATCTATGTCTCT,Promoter (6-7kb),9,74861921,74891781,29861,1,Onecut1-201,-6823,NA,NA,NA,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,16,28,15379,ENSMUSG00000043013,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
1936,cg20921483,-0.00000523,0.00000166,-3.151877514,0.001780827,loss,ns,-0.00000299,0.00000282,-1.059680444,0.290114947,neg,ns,-0.000489537,0.000826095,-0.592591195,0.553886779,neg,ns,0.256579001,-0.0000244,0.0000284,-0.857778697,0.391677355,neg,ns,0.945347354,Tfec,Tfec_Intergenic_downstream,6,16548299,16548348,16548299,16548300,50,-,CGTGGACTGTCATCGTAATATACCTCAGTGAAATGAAGGTTAATTCTGAT,Distal Intergenic,6,16834692,16835263,572,2,Tfec-204,286964,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,19,23,21426,ENSMUSG00000029553,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23816,cg01103892,0.0000562,0.00000794,7.076977052,9.88E-12,gain,yes,-0.0000143,0.0000135,-1.059321171,0.29027822,neg,ns,-0.000814845,0.003951437,-0.206214965,0.836758365,neg,ns,0.077399938,0.0000522,0.00013589,0.384270556,0.701041384,pos,ns,0.785331087,Galnt2l,Galnt2l_Intron,8,120450165,120450214,120450213,120450214,50,+,AAACTGTAGTGTCCCCGAGACTGGTCTTTAAAACTGTCAGAAGCCAAGCG,"Intron (Galnt2l-201/Galnt2l, intron 1 of 15)",8,119910841,124345722,4434882,1,Galnt2l-201,539324,Galnt2l-201;Gse1-206,Galnt2l;Gse1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,28,,NA,mapped to different genes,8,120450107,120450284,178,*,178,14,0.488764045,1.321314952,0.078651685,1.48E-09,CpGisland,TRUE,U11,Tr-P
5859,cg14991111,0.00000221,0.00000254,0.870355753,0.38477947,gain,ns,-0.00000458,0.00000432,-1.059257775,0.290307036,neg,ns,-0.000268995,0.00126576,-0.212516207,0.831844006,neg,ns,0.079958108,0.0000115,0.0000435,0.263943921,0.791998505,pos,ns,0.903540079,Cnot4,Cnot4_Exon,6,35051175,35051224,35051175,35051176,50,+,CGTGGAAAGGCCATCCAAGGATAGCGGGCTGCCTGGCCTGGAAAACTGAA,"Exon (Cnot4-206/Cnot4, exon 10 of 11)",6,35022065,35133625,111561,2,Cnot4-206,82401,Cnot4-206;Cnot4-202;Cnot4-203;Cnot4-201;Cnot4-207;Cnot4-204;Cnot4-208,Cnot4;Cnot4;Cnot4;Cnot4;Cnot4;Cnot4;Cnot4,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,10,53621,ENSMUSG00000038784,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12187,cg17354252,0.0000757,0.00000896,8.455040286,1.11E-15,gain,yes,-0.0000161,0.0000152,-1.058969944,0.290437896,neg,ns,0.016371635,0.0044576,3.672746211,0.000282556,pos,ns,3.548895639,-0.000472144,0.000153297,-3.079940249,0.002255838,neg,ns,0.101595416,Aopep,Aopep_Exon,13,63278863,63278912,63278863,63278864,50,+,CGCTTTTAGTCTCCAGCCAGGATAAAAGGAAATGGCATCAGGGAGGAAGC,"Exon (Aopep-226/Aopep, exon 1 of 5)",13,63014934,63299656,284723,1,Aopep-202,263929,Aopep-202;Aopep-201;Aopep-208;Aopep-219;Aopep-224;Aopep-220;Aopep-227;Aopep-203;Aopep-216;Aopep-209;Aopep-210;Aopep-228;Aopep-207;Aopep-213;Aopep-212;Aopep-225;Aopep-226;Aopep-221;Aopep-214,Aopep;Aopep;Aopep;Aopep;Aopep;Aopep;Aopep;Aopep;Aopep;Aopep;Aopep;Aopep;Aopep;Aopep;Aopep;Aopep;Aopep;Aopep;Aopep,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;-47;-2995,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,7,72061,ENSMUSG00000021458,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U5,En-Sd
1263,cg16144055,-0.0000468,0.00000707,-6.61187313,1.66E-10,loss,yes,0.0000127,0.000012,1.058935133,0.290453725,pos,ns,0.013946469,0.003519384,3.962758926,0.000092,pos,ns,4.036190125,-0.000235824,0.000121031,-1.948454865,0.052262614,neg,ns,0.490344893,Bcor,Bcor_Exon,X,12137468,12137517,12137516,12137517,50,-,AACCTGCCAGTGATAATGTGCGATCAACACCAAATCACCCCCGCCAGGCG,"Exon (Bcor-208/Bcor, exon 2 of 5)",20,12036743,12160355,123613,2,Bcor-201,22838,Bcor-201;Bcor-208,Bcor;Bcor,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,74,71458,ENSMUSG00000040363,conserved gene but different region,X,12137394,12137618,225,*,225,20,0.635555556,0.882352941,0.088888889,1.63E-14,CpGisland,TRUE,U3,Pr-B
10386,cg26254634,-0.00000379,0.00000136,-2.775873597,0.005839984,loss,ns,0.00000245,0.00000232,1.058860481,0.290487672,pos,ns,0.000632267,0.000679151,0.930966967,0.352595075,pos,ns,0.452723758,-0.00000182,0.0000234,-0.077848751,0.937998589,neg,ns,0.062359275,Mxi1,Mxi1_Exon,19,53310882,53310931,53310930,53310931,50,+,GATGGAGAAGCACATCAACACTTTTCTGCAGAACGTGCAGATTCTGCTCG,Promoter (<=1kb),19,53310518,53373293,62776,1,Mxi1-201,364,Mxi1-201;Mxi1-208,Mxi1;Mxi1,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,10,17859,ENSMUSG00000025025,conserved gene and region,19,53310521,53311073,553,*,553,59,0.692585895,0.901049434,0.106690778,8.68E-47,CpGisland,TRUE,U1,Pr-A
26211,cg12258236,-0.0000138,0.0000104,-1.325310291,0.186044179,loss,ns,0.0000188,0.0000177,1.058730686,0.290546702,pos,ns,-0.018950922,0.005199742,-3.644588592,0.000313923,neg,ns,3.503176604,0.000423764,0.000178819,2.369796279,0.018409923,pos,ns,0.767835409,Sox5,Sox5_Intron,6,144477411,144477460,144477459,144477460,50,+,CCCAGCTCCTGCAGAGTGCCTGTTGTTATGAAAGCAAGGTGCTCCACACG,"Intron (Sox5-209/Sox5, intron 3 of 13)",6,143843739,144781977,938239,2,Sox5-209,304517,Sox5-209;Sox5-212,Sox5;Sox5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,71,20678,ENSMUSG00000041540,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11584,cg01783053,0.00000482,0.00000337,1.430375554,0.15361641,gain,ns,-0.00000606,0.00000572,-1.05862552,0.290594537,neg,ns,-0.003175981,0.001676469,-1.89444666,0.05909628,neg,ns,1.228439856,3.93E-08,0.0000577,0.000681514,0.999456669,pos,ns,0.920677998,Ube3a,Ube3a_Exon,7,59271951,59272000,59271951,59271952,50,+,CGAGCAGCTGCAAAGCATCTAATAGAACGCTACTACCACCAGTTAACTGA,"Exon (Ube3a-216/Ube3a, exon 3 of 9)",7,59228750,59289819,61070,1,Ube3a-216,43201,Ube3a-216;Ube3a-201;Ube3a-213;Ube3a-203;Ube3a-210;Ube3a-204;Ube3a-207;Ube3a-217;Ube3a-218;Ube3a-202;Ube3a-205,Ube3a;Ube3a;Ube3a;Ube3a;Ube3a;Ube3a;Ube3a;Ube3a;Ube3a;Ube3a;Ube3a,0;0;0;0;0;0;0;0;0;0;-4935,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,22215,ENSMUSG00000025326,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11557,cg19628290,0.0000686,0.00000642,10.6817634,6.93E-23,gain,yes,-0.0000115,0.0000109,-1.058593867,0.290608935,neg,ns,0.003076669,0.003194973,0.962971636,0.336312307,pos,ns,0.47325724,-0.0000372,0.000109875,-0.338330731,0.735342991,neg,ns,0.168237897,Vax1,Vax1_Promoter,19,59171388,59171437,59171436,59171437,50,-,TATCTAATTGGACTATTAACAAACAGTCCTCTGAGTGCGGCGGTCTGGCG,Promoter (1-2kb),19,59166187,59170056,3870,2,Vax1-201,-1381,Vax1-201;Vax1-202,Vax1;Vax1,0;-4408,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,12,18,22326,ENSMUSG00000006270,conserved gene and region,19,59171425,59171501,77,*,77,8,0.727272727,0.811594203,0.103896104,0.00000163,CpGisland,TRUE,U13,Hc-P
23520,cg02945640,-0.00000597,0.00000149,-4.017681605,0.0000738,loss,ns,-0.00000267,0.00000252,-1.058480362,0.29066057,neg,ns,0.000854851,0.00073939,1.156156475,0.248507388,pos,ns,0.604660695,-0.0000467,0.0000254,-1.838500187,0.066945261,neg,ns,0.067345253,Inafm2,Inafm2_Exon,2,118746155,118746204,118746155,118746156,50,+,CGGCCACCTACACCGGGGACAAGAAGGCGAAGATGGCGGCCAAGACCAAC,Promoter (<=1kb),2,118745758,118748810,3053,1,Inafm2-201,397,Inafm2-201,Inafm2,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,100043272,ENSMUSG00000074918,conserved gene and region,2,118745611,118746808,1198,*,1198,162,0.759599332,0.937615042,0.135225376,2.04E-146,CpGisland,TRUE,U1,Pr-A
6592,cg12145907,0.00000634,0.00000964,0.658437541,0.510745723,gain,ns,-0.0000173,0.0000164,-1.058454723,0.290672234,neg,ns,-0.003944552,0.004795956,-0.822474592,0.411439022,neg,ns,0.385694521,0.000111406,0.000164933,0.675462138,0.499885725,pos,ns,0.340275306,Gm37013,Gm37013_Exon,18,37815587,37815636,37815635,37815636,50,+,ACCCTTTTGTTCCTCTTTTACCACCTGGGTTACGTTTGTGGGCAGATCCG,"Exon (Pcdhgc4-201/Pcdhgc4, exon 1 of 4)",18,36969916,37833296,863381,1,Gm37013-201,845671,Gm37013-201;Gm37388-201;Gm42416-201;Pcdhga1-201;Pcdhga10-201;Pcdhga11-201;Pcdhga12-201;Pcdhga2-201;Pcdhga3-201;Pcdhga4-201;Pcdhga5-201;Pcdhga6-201;Pcdhga7-201;Pcdhga8-201;Pcdhga9-201;Pcdhgb1-201;Pcdhgb2-202;Pcdhgb4-202;Pcdhgb5-201;Pcdhgb6-201;Pcdhgb7-201;Pcdhgb8-201;Pcdhgc3-201;Pcdhgc3-202;Pcdhgc4-201;Pcdhgc4-203;Pcdhgc4-202;Pcdhgc5-201;Pcdhgc5-203;Pcdhgc5-204;Pcdhgc5-202,Gm37013;Gm37388;Gm42416;Pcdhga1;Pcdhga10;Pcdhga11;Pcdhga12;Pcdhga2;Pcdhga3;Pcdhga4;Pcdhga5;Pcdhga6;Pcdhga7;Pcdhga8;Pcdhga9;Pcdhgb1;Pcdhgb2;Pcdhgb4;Pcdhgb5;Pcdhgb6;Pcdhgb7;Pcdhgb8;Pcdhgc3;Pcdhgc3;Pcdhgc4;Pcdhgc4;Pcdhgc4;Pcdhgc5;Pcdhgc5;Pcdhgc5;Pcdhgc5,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;-3877;-3916;-3930;-4018,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,14,100384868,ENSMUSG00000103458,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
7651,cg15400000,-0.00000968,0.00000469,-2.061760785,0.040063815,loss,ns,-0.00000844,0.00000797,-1.058404104,0.290695265,neg,ns,-0.006534741,0.002336362,-2.796972364,0.005480789,neg,ns,2.261156879,0.000187366,0.0000803,2.33195277,0.020343415,pos,ns,0.848137204,Zbtb20,Zbtb20_fiveUTR,16,43577144,43577193,43577192,43577193,50,-,CCATTACTCCACGAGTCCTGTCTCTAAGCTTCCTGACAAATGCTAGAACG,5' UTR,16,42907645,43577725,670081,1,Zbtb20-217,669499,Zbtb20-217;Zbtb20-204;Zbtb20-215;Zbtb20-201;Zbtb20-203;Zbtb20-213;Zbtb20-219;Zbtb20-216;Zbtb20-208;Zbtb20-220;Zbtb20-206;Zbtb20-202;Zbtb20-205,Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,8,98,56490,ENSMUSG00000022708,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14154,cg14259514,0.0000576,0.00000605,9.526891534,4.87E-19,gain,yes,-0.0000109,0.0000103,-1.058381891,0.290705371,neg,ns,-0.002584085,0.003009776,-0.858563795,0.391244573,neg,ns,0.407551673,0.000338956,0.000103506,3.274750386,0.001177241,pos,ns,0.168976114,Hoxd8,Hoxd8_fiveUTR,2,74706032,74706081,74706080,74706081,50,-,CGTCCAGTGGTAATATTGGCGAGGACCCAGACCACTTAAATCAGAGCTCG,5' UTR,2,74704615,74706812,2198,1,Hoxd8-203,1417,Hoxd8-203;Hoxd8-201;Hoxd8-202,Hoxd8;Hoxd8;Hoxd8,0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,9,10,15437,ENSMUSG00000027102,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
24381,cg13972970,-0.00000287,0.00000123,-2.333688827,0.020250966,loss,ns,0.00000221,0.00000209,1.058348577,0.290720529,pos,ns,0.000631391,0.000611541,1.032458981,0.302661948,pos,ns,0.519042177,0.0000064,0.000021,0.304158201,0.761211432,pos,ns,0.040262308,Chd4,Chd4_fiveUTR,6,125096683,125096732,125096731,125096732,50,+,GACAGCCTTTGGAGAGCTGCCCTGTCTGGGGACTGGCCCCTCCCCGGGCG,Promoter (<=1kb),6,125095981,125130585,34605,1,Chd4-203,702,Chd4-203;Chd4-201;Chd4-202;Chd4-208;Chd4-207,Chd4;Chd4;Chd4;Chd4;Chd4,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,15,107932,ENSMUSG00000063870,conserved gene and region,6,125096727,125096818,92,*,92,9,0.75,0.800773694,0.097826087,0.000000448,CpGisland,TRUE,U1,Pr-A
2037,cg01039540,-0.00000184,0.00000118,-1.559830766,0.119820148,loss,ns,0.00000212,0.000002,1.058334917,0.290726745,pos,ns,0.001704832,0.000587106,2.903790536,0.003951465,pos,ns,2.40324184,-0.0000468,0.0000202,-2.316214721,0.021198518,neg,ns,0.972767575,Pcsk5,Pcsk5_Exon,19,17617639,17617688,17617687,17617688,50,-,AGAAGTTCTCACCCTTAAAACCAGCAGCATTGGTTTTCCAGTCATTAGCG,"Exon (Pcsk5-201/Pcsk5, exon 10 of 38)",19,17432319,17837632,405314,2,Pcsk5-201,219944,Pcsk5-201;Pcsk5-202;Pcsk5-204,Pcsk5;Pcsk5;Pcsk5,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,7,18552,ENSMUSG00000024713,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20101,cg15279186,-0.00000486,0.00000293,-1.660552207,0.097814483,loss,ns,0.00000526,0.00000497,1.058190798,0.290792326,pos,ns,0.00330782,0.0014571,2.270138539,0.023885392,pos,ns,1.621867622,-0.00012097,0.0000501,-2.414118908,0.01635245,neg,ns,0.933441643,Atf7,Atf7_Exon,15,102593529,102593578,102593577,102593578,50,-,TGGATTTACACACTGCAAATCCTCTGATCTGATTACCTCCAGTGATCACG,"Exon (Atf7-207/Atf7, exon 2 of 2)",15,102525946,102625073,99128,2,Atf7-211,31495,Atf7-211;Atf7-210;Atf7-209;Atf7-202;Atf7-203;Atf7-205;Atf7-204;Atf7-206;Atf7-208;Atf7-213;Atf7-212;Atf7-207;Gm28047-201,Atf7;Atf7;Atf7;Atf7;Atf7;Atf7;Atf7;Atf7;Atf7;Atf7;Atf7;Atf7;Gm28047,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,11,223922,ENSMUSG00000099083,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1267,cg04397347,5.16E-08,0.00000117,0.044146156,0.964816324,gain,ns,0.0000021,0.00000198,1.058125784,0.290821913,pos,ns,0.002087471,0.00058134,3.590794049,0.00038316,pos,ns,3.416620053,-0.0000433,0.00002,-2.163773564,0.031245323,neg,ns,0.973891314,Riok3,Riok3_threeUTR,18,12148903,12148952,12148951,12148952,50,-,TTCAGGTTTAAAGATCGCTTCAGTAAACTAAATCCACGTAAGATCATCCG,3' UTR,18,12128741,12157387,28647,1,Riok3-201,20162,Riok3-201;Riok3-204;Riok3-212;Riok3-205;Riok3-216;Riok3-214;Riok3-217;Riok3-206;Riok3-203;Riok3-210;Riok3-202,Riok3;Riok3;Riok3;Riok3;Riok3;Riok3;Riok3;Riok3;Riok3;Riok3;Riok3,0;0;0;0;0;0;0;0;-462;-3721;-3784,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,4,66878,ENSMUSG00000024404,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14024,cg00965883,0.00000219,0.00000937,0.234084562,0.815073848,gain,ns,-0.0000168,0.0000159,-1.057974749,0.290890657,neg,ns,-0.009181352,0.004661409,-1.969651728,0.049768354,neg,ns,1.303046726,0.000315077,0.000160305,1.965480582,0.050251091,pos,ns,0.771085227,Gm13668,Gm13668_Intergenic_upstream,2,74243966,74244015,74243966,74243967,50,+,CGTCAATTCAGAACCGACTTTAACATAATCCATATTTGTTGGAGAAAGTC,Distal Intergenic,2,73959669,73960669,1001,2,Gm13668-201,-283297,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,18,20,667729,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13574,cg23342110,0.00000239,0.00000194,1.230369268,0.21949166,gain,ns,0.00000348,0.00000329,1.05786427,0.290940948,pos,ns,-0.000534957,0.000965047,-0.554332853,0.579750743,neg,ns,0.236758686,0.0000265,0.0000332,0.799424865,0.424656203,pos,ns,0.949300634,Hat1,Hat1_Exon,2,71410216,71410265,71410216,71410217,50,-,CGTGTTGAATATGCATCTAAAGTTGATGAGAACTTTGACTGTGTAGAGGT,"Exon (Hat1-202/Hat1, exon 4 of 11)",2,71388958,71441622,52665,1,Hat1-202,21258,Gm13642-201;Hat1-202;Hat1-201;Hat1-203,Gm13642;Hat1;Hat1;Hat1,2652;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,12,107435,ENSMUSG00000027018,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25530,cg10759434,0.0000236,0.00000688,3.42970784,0.000686049,gain,ns,0.0000124,0.0000117,1.057793592,0.290973125,pos,ns,-0.000318657,0.003421829,-0.093124888,0.925864501,neg,ns,0.033452567,0.000133845,0.000117676,1.137398861,0.25624994,pos,ns,0.827392554,Ebf3,Ebf3_Exon,7,137198585,137198634,137198585,137198586,50,+,CGGAGATGACATTGGCAGGTGAGAATGAGAAAATGCCGTGTGTGCTGCTA,"Exon (Gm45278-201/Gm45278-201, exon 1 of 2)",7,137193673,137314445,120773,2,Ebf3-204,115811,Ebf3-204;Ebf3-201;Ebf3-202;Ebf3-203;Ebf3-208;Ebf3-205,Ebf3;Ebf3;Ebf3;Ebf3;Ebf3;Ebf3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,84,13593,ENSMUSG00000010476,conserved gene and region,7,137198447,137198916,470,*,470,32,0.617021277,0.72783585,0.068085106,3.00E-19,CpGisland,TRUE,U15,NS
20919,cg12899502,0.0000978,0.00000866,11.28894319,5.48E-25,gain,yes,-0.0000156,0.0000147,-1.057644603,0.291040961,neg,ns,0.007534869,0.004312459,1.74723274,0.08158721,pos,ns,1.088377917,0.0000351,0.000148305,0.236408463,0.813271858,pos,ns,0.17491471,Pax6,Pax6_Intron,2,105690034,105690083,105690082,105690083,50,-,TAACACAATGTGGCCCGCTGCACGCCTCAAGAGAATCCTTTTGTTGTCCG,"Intron (Pax6-206/Pax6, intron 7 of 12)",2,105668900,105697364,28465,1,Pax6-206,21134,Pax6-206;Pax6-207;Pax6-210;Pax6-208;Pax6-202;Pax6-205;Pax6-225;Pax6-204;Pax6-201;Pax6-203;Pax6-224;Pax6-219;Pax6-213;Pax6-211;Pax6-222;Pax6-212;Pax6-215;Pax6-223;Pax6-216;Pax6-218,Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;-2400,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,78,18508,ENSMUSG00000027168,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
2118,cg25458616,-0.00000737,0.00000481,-1.534778219,0.125858256,loss,ns,0.00000863,0.00000816,1.057227251,0.291231043,pos,ns,0.005752144,0.002391564,2.405181023,0.016750207,pos,ns,1.775979809,0.0000462,0.0000822,0.562187364,0.574394638,pos,ns,0.087611363,Bhlhe22,Bhlhe22_Promoter,3,18051873,18051922,18051873,18051874,50,-,CGAGACACCGGGCAGATGTGTTTTCATTGCCCTGTAAGATAAATGCAGTG,Promoter (2-3kb),3,18054174,18057517,3344,1,Bhlhe22-201,-2301,Bhlhe22-201,Bhlhe22,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,6,22,59058,ENSMUSG00000025128,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
4399,cg07684203,-0.0000114,0.00000267,-4.268403624,0.0000262,loss,ns,-0.00000479,0.00000453,-1.057126096,0.291277126,neg,ns,-0.002889753,0.001326683,-2.178178408,0.030146082,neg,ns,1.520769121,-0.0000166,0.0000456,-0.364926058,0.715415434,neg,ns,0.972062986,Unc5d,Unc5d_Exon,8,28760796,28760845,28760844,28760845,50,+,GCTGGGTTGGTGCAGGTCCGGGAACGTTTCTGCCATCCTCTACCACAGCG,"Exon (Unc5d-201/Unc5d, exon 6 of 18)",8,28646717,29219636,572920,2,Unc5d-201,458791,Unc5d-201;Unc5d-204;Unc5d-202;Unc5d-203;Unc5d-205,Unc5d;Unc5d;Unc5d;Unc5d;Unc5d,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,11,210801,ENSMUSG00000063626,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12172,cg14761541,0.00000294,0.00000336,0.87495917,0.382273502,gain,ns,-0.00000603,0.0000057,-1.056972907,0.291346924,neg,ns,-0.00521418,0.001671139,-3.120134733,0.001977724,neg,ns,2.703834376,0.0000651,0.0000575,1.132498555,0.258300078,pos,ns,0.92315223,Map2k5,Map2k5_Intron,9,63206766,63206815,63206814,63206815,50,-,AAATCATAATGCCATCTGCTACTCTGGACCTCAAAACATCAGGGATCTCG,"Intron (Map2k5-201/Map2k5, intron 19 of 21)",9,63163768,63377902,214135,2,Map2k5-201,171087,Map2k5-201,Map2k5,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,34,37,23938,ENSMUSG00000058444,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1828,cg23179251,0.0000025,0.00000343,0.729141415,0.466465678,gain,ns,0.00000615,0.00000582,1.056875575,0.291391278,pos,ns,0.003299558,0.001705114,1.935095645,0.053887946,pos,ns,1.268508374,-0.000107987,0.0000586,-1.841562296,0.066494404,neg,ns,0.927241746,Foxp2,Foxp2_Intron,6,15416584,15416633,15416584,15416585,50,+,CGTCTGTATTGGCAAGGTTTATAAGTTATATTTTATGCAAGACTACGATT,"Intron (Foxp2-207/Foxp2, intron 18 of 18)",6,14901349,15441977,540629,1,Foxp2-207,515235,Foxp2-207;Foxp2-213;Foxp2-205;Foxp2-204;Foxp2-201;Foxp2-206,Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,38,65,114142,ENSMUSG00000029563,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9333,cg05553566,-0.0000128,0.0000111,-1.154564591,0.249158012,loss,ns,-0.0000199,0.0000188,-1.056844121,0.291405612,neg,ns,-0.004024935,0.005517281,-0.729514097,0.466238089,neg,ns,0.33139225,-0.000401412,0.000189739,-2.115602803,0.035175837,neg,ns,0.617330859,Slit2,Slit2_Exon,5,48220023,48220072,48220071,48220072,50,+,CGCCGCCTGGCAAACAAAAGAATTGGACAGATCAAAAGCAAGAAATTCCG,"Exon (Slit2-208/Slit2, exon 14 of 36)",5,47983138,48307733,324596,1,Slit2-208,236885,Slit2-208;Slit2-201;Slit2-202;Slit2-216;Slit2-217;Slit2-209;Slit2-218;Slit2-206,Slit2;Slit2;Slit2;Slit2;Slit2;Slit2;Slit2;Slit2,0;0;0;0;0;37921;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,11,20563,ENSMUSG00000031558,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23464,cg17820046,-0.0000164,0.00000766,-2.138323516,0.033272003,loss,ns,0.0000138,0.000013,1.056836398,0.291409132,pos,ns,0.000049,0.003813495,0.012861282,0.989746737,pos,ns,0.004475921,-0.0003072,0.000131146,-2.342427952,0.019791161,neg,ns,0.803213001,Rbfox3,Rbfox3_Intron,11,118530590,118530639,118530590,118530591,50,+,CGAGTGTGGATCTAATCTTCAGCTGATTAAATGTCCCTCATTAATGAGTT,"Intron (Rbfox3-205/Rbfox3, intron 3 of 13)",11,118489762,118909550,419789,2,Rbfox3-205,378911,Rbfox3-205;Rbfox3-203;Rbfox3-201;Rbfox3-202;Rbfox3-204;Rbfox3-206;Rbfox3-209,Rbfox3;Rbfox3;Rbfox3;Rbfox3;Rbfox3;Rbfox3;Rbfox3,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,13,52897,ENSMUSG00000025576,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14134,cg12997253,0.00000306,0.00000127,2.416202889,0.016260916,gain,ns,-0.00000228,0.00000215,-1.056751899,0.291447642,neg,ns,-0.001048779,0.000630955,-1.662210007,0.097481453,neg,ns,1.011078004,0.0000189,0.0000217,0.870319481,0.384799256,pos,ns,0.045331857,Hoxd10,Hoxd10_Exon,2,74694228,74694277,74694228,74694229,50,-,CGCCGCCTAGAGATCAGTAAGAGCGTTAACCTCACCGACAGGCAGGTCAA,"Exon (Hoxd10-201/Hoxd10, exon 2 of 2)",2,74691924,74695105,3182,1,Hoxd10-201,2304,Hoxd10-201;Hoxd9-201,Hoxd10;Hoxd9,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,21,24,15430,ENSMUSG00000050368,conserved gene and region,2,74694222,74694348,127,*,127,12,0.519685039,1.400735294,0.094488189,3.59E-09,CpGisland,TRUE,U13,Hc-P
12932,cg13202239,0.0000145,0.00000211,6.875064561,3.42E-11,gain,yes,-0.00000378,0.00000358,-1.056585626,0.291523432,neg,ns,0.003002535,0.001047928,2.86520975,0.004452053,pos,ns,2.351439664,0.0000151,0.000036,0.419267157,0.675311274,pos,ns,0.066142107,Ntn1,Ntn1_Intron,11,68399735,68399784,68399783,68399784,50,+,ATTTTCTGTCTGTGAAAGCCTTTCTTCCCACCTCTGTTCAGATTAGCCCG,"Intron (Ntn1-202/Ntn1, intron 2 of 7)",11,68209364,68400823,191460,2,Ntn1-202,1039,Ntn1-202,Ntn1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,6,18208,ENSMUSG00000020902,conserved gene but different region,11,68399783,68400438,656,*,656,66,0.704268293,0.820995146,0.100609756,1.95E-50,CpGisland,TRUE,U3,Pr-B
9770,cg11921792,0.00001,0.0000057,1.75483647,0.080275154,gain,ns,0.0000102,0.00000968,1.056528072,0.291549669,pos,ns,0.008185829,0.00283686,2.885524579,0.00418169,pos,ns,2.378648122,-0.000310127,0.0000976,-3.178853274,0.001627903,neg,ns,0.898541014,Trps1,Trps1_Intron,15,50776685,50776734,50776685,50776686,50,-,CGGATTAGTGATGGGTGAAACCAATTCAACCCAAAATGGCAACACTTAAT,"Intron (Trps1-202/Trps1, intron 4 of 5)",15,50654752,50889691,234940,2,Trps1-202,112957,Trps1-202;Trps1-206;Trps1-204;Trps1-205;Trps1-207;Trps1-201,Trps1;Trps1;Trps1;Trps1;Trps1;Trps1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,36,83925,ENSMUSG00000038679,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8983,cg11233640,0.0000219,0.0000083,2.6431666,0.008630886,gain,ns,-0.0000149,0.0000141,-1.056413105,0.291602084,neg,ns,-0.007328246,0.00413057,-1.774148727,0.077020042,neg,ns,1.113396247,0.000149931,0.00014205,1.055478274,0.29202852,pos,ns,0.590857577,Sufu,Sufu_Intron,19,46470575,46470624,46470623,46470624,50,-,AGATTTAATACCTCACCTAGCCCACACAAATAATTCATGCTTCTGCATCG,"Intron (Sufu-201/Sufu, intron 8 of 11)",19,46396896,46488804,91909,1,Sufu-201,73679,Sufu-201;Sufu-202;Sufu-203;Sufu-205,Sufu;Sufu;Sufu;Sufu,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,24069,ENSMUSG00000025231,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
26398,cg09354848,0.0000301,0.00000319,9.42070764,1.07E-18,gain,yes,-0.00000573,0.00000543,-1.056282943,0.291661434,neg,ns,0.003450613,0.001589734,2.170560896,0.030723145,pos,ns,1.512534325,-0.0000235,0.0000547,-0.430325227,0.667258087,neg,ns,0.069227352,Nkx2-2,Nkx2-2_Promoter,2,147195515,147195564,147195515,147195516,50,-,CGCTAAGACGCCATAAAACCAAAGGGCCAGATGTGGCACGTTATTTATGT,Promoter (1-2kb),2,147186305,147194243,7939,2,Nkx2-2-202,-1321,Nkx2-2-202;Nkx2-2-204,Nkx2-2;Nkx2-2,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,3,30,18088,ENSMUSG00000027434,conserved gene and region,2,147195416,147195615,200,*,200,12,0.54,0.824175824,0.06,0.000000585,CpGisland,TRUE,U13,Hc-P
18340,cg09193369,0.0000146,0.00000229,6.390971511,6.04E-10,gain,yes,-0.00000411,0.00000389,-1.056273057,0.291665942,neg,ns,0.00213782,0.001138888,1.877112736,0.061441631,pos,ns,1.211537264,-0.0000649,0.0000392,-1.657729904,0.098383546,neg,ns,0.952114946,Pogz,Pogz_Exon,3,94856155,94856204,94856155,94856156,50,-,CGACAGTACAAAGAAGACTCTTGTCACACTAATTGCCAACAACAATGGTA,"Exon (Pogz-205/Pogz, exon 3 of 19)",3,94837567,94882326,44760,1,Pogz-205,18588,Pogz-205;Pogz-202;Pogz-207;Pogz-203;Pogz-201;Pogz-204,Pogz;Pogz;Pogz;Pogz;Pogz;Pogz,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,7,229584,ENSMUSG00000038902,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24331,cg12804170,-0.0000203,0.00000842,-2.41027956,0.016522277,loss,ns,0.0000151,0.0000143,1.056170688,0.291712625,pos,ns,-0.000377187,0.004192576,-0.089965529,0.928372706,neg,ns,0.032277636,-0.0000851,0.000144182,-0.590411852,0.555344717,neg,ns,0.826444335,Pou3f1,Pou3f1_Intergenic_downstream,4,124664318,124664367,124664366,124664367,50,+,GGTCTGGGTATTATTAGGCTGCAGAGACAGCACGGAGGCATATGGTCTCG,Distal Intergenic,4,124656807,124660655,3849,1,Pou3f1-201,7511,Pou3f1-201,Pou3f1,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,11,85,18991,ENSMUSG00000090125,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
17386,cg24063559,-0.0000035,0.00000632,-0.553710748,0.58017597,loss,ns,0.0000113,0.0000107,1.055966853,0.291805595,pos,ns,-0.002823951,0.00314617,-0.897583571,0.370104161,neg,ns,0.431676032,0.000169888,0.000108197,1.570180987,0.117393109,pos,ns,0.833422162,Asb18,Asb18_Intron,1,90007530,90007579,90007530,90007531,50,+,CGGATCTTTTCCTGGCTTGTGAATCAAAGTAATAAGAGCAATGCTCAGGC,"Intron (Asb18-201/Asb18, intron 1 of 5)",1,89950220,90014577,64358,2,Asb18-201,6998,Asb18-201;Asb18-202;Asb18-204;Asb18-203,Asb18;Asb18;Asb18;Asb18,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,4,208372,ENSMUSG00000067081,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14657,cg17714851,0.000153158,0.0000189,8.113742514,1.16E-14,gain,yes,-0.0000339,0.0000321,-1.055929358,0.291822699,neg,ns,0.023459743,0.009394986,2.497049369,0.013041702,pos,ns,1.884665736,-0.000243212,0.000323093,-0.75276272,0.452163756,neg,ns,0.51331077,Rbfox2,Rbfox2_Exon,15,77105600,77105649,77105600,77105601,50,+,CGGTGCCGTGTAATTTCTCCCTGGCCCTGTCTGCATCAGCACTATTCTCG,"Exon (Rbfox2-204/Rbfox2, exon 6 of 14)",15,77078990,77306928,227939,2,Rbfox2-204,201279,Rbfox2-204;Rbfox2-203;Rbfox2-202;Rbfox2-206;Rbfox2-208;Rbfox2-209;Rbfox2-201;Rbfox2-207;Rbfox2-212;Rbfox2-213,Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,20,93686,ENSMUSG00000033565,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19061,cg22680686,-0.00000349,0.00000431,-0.808745559,0.419281752,loss,ns,0.00000774,0.00000733,1.05592294,0.291825627,pos,ns,-0.001044176,0.002146734,-0.486402134,0.627025754,neg,ns,0.202714621,0.0000496,0.0000738,0.671859752,0.502173371,pos,ns,0.937755302,Ar,Ar_Exon,X,98315871,98315920,98315919,98315920,50,-,AAATCAAAAATTCTTTGATGAACTTCGAATGAACTACATCAAGGAACTCG,"Exon (Ar-201/Ar, exon 7 of 8)",20,98148769,98323215,174447,1,Ar-201,167102,Ar-201,Ar,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,11835,ENSMUSG00000046532,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5585,cg25571914,0.0000186,0.00000623,2.9904275,0.003009129,gain,ns,-0.0000112,0.0000106,-1.055773327,0.291893882,neg,ns,-0.007169874,0.003103082,-2.310565458,0.021513047,neg,ns,1.667298067,0.000225616,0.000106715,2.114195604,0.035296763,pos,ns,0.830362635,Hdac9,Hdac9_Exon,12,34287514,34287563,34287562,34287563,50,+,GAGTGATGTTCAGAATGAACAAGCTGTATTTCCTCCAGGCTGGCTTTTCG,"Exon (Hdac9-205/Hdac9, exon 14 of 25)",12,34047580,34528328,480749,2,Hdac9-205,240765,Gm18025-201;Hdac9-205;Hdac9-204;Hdac9-206;Hdac9-210;Hdac9-207,Gm18025;Hdac9;Hdac9;Hdac9;Hdac9;Hdac9,3572;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,31,79221,ENSMUSG00000004698,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14125,cg17489939,0.000049,0.00000803,6.098972236,3.18E-09,gain,yes,0.0000144,0.0000136,1.055743675,0.291907411,pos,ns,0.012092933,0.003998261,3.024548387,0.002698286,pos,ns,2.568912046,-0.000319367,0.0001375,-2.322673931,0.020843832,neg,ns,0.189414198,Hoxd10,Hoxd10_Exon,2,74692289,74692338,74692337,74692338,50,-,ACCACCAACATTAAGGAAGAATCCAATTGCTGCATGTATTCTGATAAGCG,Promoter (<=1kb),2,74691924,74695105,3182,1,Hoxd10-201,365,Hoxd10-201,Hoxd10,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,21,24,15430,ENSMUSG00000050368,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
24054,cg22713419,-0.000000267,0.00000176,-0.152387165,0.878980712,loss,ns,0.00000315,0.00000298,1.055471576,0.292031577,pos,ns,0.003162347,0.000873547,3.620123033,0.000343809,pos,ns,3.463682525,-0.000101133,0.00003,-3.366470297,0.000857251,neg,ns,0.959488823,Pptc7,Pptc7_threeUTR,5,122323435,122323484,122323483,122323484,50,+,TCTAAACATATCAGAACCTTATTTCTTCCTATGAACTTAAGCTGCCTGCG,3' UTR,5,122284365,122324281,39917,1,Pptc7-201,39070,Pptc7-201;Pptc7-202;Rad9b-202;Rad9b-204;Rad9b-201,Pptc7;Pptc7;Rad9b;Rad9b;Rad9b,0;27663;0;27810;30749,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,320717,ENSMUSG00000038582,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20688,cg18349569,-0.0000278,0.0000116,-2.398270876,0.017063551,loss,ns,0.0000208,0.0000197,1.05544574,0.292043368,pos,ns,0.001011577,0.005770845,0.175290996,0.860965424,pos,ns,0.065014289,0.000136094,0.000198459,0.685756158,0.4933794,pos,ns,0.902715953,Hipk3,Hipk3_Exon,2,104471380,104471429,104471428,104471429,50,-,TTTGCAACATTGCAGGAAGTATGGACAATTCATCGACAATCTGCATTGCG,"Exon (Hipk3-201/Hipk3, exon 2 of 16)",2,104426481,104494446,67966,2,Hipk3-201,23017,Hipk3-201;Hipk3-202;Hipk3-203,Hipk3;Hipk3;Hipk3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,15259,ENSMUSG00000027177,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2790,cg20083021,-0.0000221,0.0000116,-1.911819095,0.056821117,loss,ns,-0.0000207,0.0000196,-1.05537494,0.292075683,neg,ns,-0.007051143,0.005753283,-1.225585935,0.221284816,neg,ns,0.655048385,-0.000134714,0.000197855,-0.680874486,0.496459163,neg,ns,0.762732084,Klhl14,Klhl14_Intergenic_upstream,18,21729207,21729256,21729207,21729208,50,-,CGCAATGTGACTGCATGTTCGAGATCACTGCCTCCCATCTGCAATTTGTG,Distal Intergenic,18,21550379,21654718,104340,2,Klhl14-202,-74538,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,38,225266,ENSMUSG00000042514,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14507,cg01881437,-0.00000587,0.0000022,-2.671478455,0.007950744,loss,ns,0.00000394,0.00000373,1.055361097,0.292082002,pos,ns,-0.0000599,0.001093254,-0.054786863,0.956343558,neg,ns,0.019386063,0.00000658,0.0000376,0.175121667,0.861098358,pos,ns,0.954795236,Ptprd,Ptprd_Exon,4,76086012,76086061,76086060,76086061,50,-,CTTGATCCACAGGCAGTGTCCTGAACTGGACACTGGGACTATATGGCCCG,"Exon (Ptprd-206/Ptprd, exon 18 of 36)",4,75941238,76449980,508743,2,Ptprd-206,363919,Ptprd-206;Ptprd-204;Ptprd-213;Ptprd-220;Ptprd-203;Ptprd-217;Ptprd-218;Ptprd-219;Ptprd-201;Ptprd-222;Ptprd-214;Ptprd-216,Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,13,32,19266,ENSMUSG00000028399,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13439,cg25388778,0.00000161,0.00000198,0.813115643,0.416775801,gain,ns,-0.00000356,0.00000337,-1.055269528,0.2921238,neg,ns,0.000428298,0.000987674,0.433642928,0.664849366,pos,ns,0.177276741,-0.0000185,0.000034,-0.545759654,0.585623661,neg,ns,0.960367475,Sltm,Sltm_threeUTR,9,70573736,70573785,70573736,70573737,50,-,CGGAGAAGGAAAGCAAGGATTATGAGATGAATGCGAACCATAAAGATGGT,3' UTR,9,70542754,70592234,49481,1,Sltm-206,30982,Sltm-206;Sltm-203;Sltm-201;Sltm-208;Sltm-204,Sltm;Sltm;Sltm;Sltm;Sltm,0;0;0;0;-1623,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,11,66660,ENSMUSG00000032212,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21055,cg19765236,0.0000022,0.00000228,0.966289841,0.334652389,gain,ns,-0.00000408,0.00000387,-1.055241103,0.292136776,neg,ns,-0.000123627,0.001132315,-0.109181069,0.913129514,neg,ns,0.03946762,0.0000148,0.0000389,0.381246513,0.703281495,pos,ns,0.952687307,Slc7a6,Slc7a6_Exon,8,106179468,106179517,106179516,106179517,50,+,AGCTACGCTTATATTCTAGAGGCCTTTGGGGGCTTCATTGCCTTCATCCG,"Exon (Slc7a6-201/Slc7a6, exon 2 of 10)",8,106168857,106198706,29850,1,Slc7a6-201,10611,Slc7a6-201;Slc7a6-207;Slc7a6-203;Slc7a6-204;Slc7a6-202;Slc7a6-206;Slc7a6-205,Slc7a6;Slc7a6;Slc7a6;Slc7a6;Slc7a6;Slc7a6;Slc7a6,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,330836,ENSMUSG00000031904,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12060,cg18295685,-0.0000232,0.00000764,-3.040819161,0.002560692,loss,ns,-0.0000137,0.000013,-1.055027026,0.292234514,neg,ns,-0.005092374,0.003802905,-1.339074709,0.181527383,neg,ns,0.741057854,0.000151855,0.000130782,1.161137586,0.246479261,pos,ns,0.823123353,Efna5,Efna5_Intron,17,62625654,62625703,62625654,62625655,50,+,CGGGCAAATTTCCTCCTGCCAGTGGAAGCACAGCTTGCCTGAAGTCGTAA,"Intron (Efna5-201/Efna5, intron 2 of 4)",17,62604184,62881317,277134,2,Efna5-201,255614,Efna5-201;Efna5-202,Efna5;Efna5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,21,13640,ENSMUSG00000048915,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3447,cg25091185,0.0000457,0.0000083,5.503177774,7.82E-08,gain,yes,0.0000149,0.0000141,1.055015041,0.292239986,pos,ns,0.013382421,0.004132765,3.238127563,0.001333574,pos,ns,2.874982761,-0.000134595,0.000142125,-0.947014123,0.344369184,neg,ns,0.315703088,Bcl11a,Bcl11a_Exon,11,24086254,24086303,24086254,24086255,50,+,CGAAAAGTTTAAGGGCATGTTGGAAATTTCAAAAGGTTGGTTTGACAGGA,"Exon (Bcl11a-205/Bcl11a, exon 2 of 2)",11,24078056,24173194,95139,1,Bcl11a-201,8198,Bcl11a-201;Bcl11a-203;Bcl11a-205;Bcl11a-202;Bcl11a-204,Bcl11a;Bcl11a;Bcl11a;Bcl11a;Bcl11a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,51,98,14025,ENSMUSG00000000861,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6634,cg26385432,0.00000424,0.00000149,2.836365078,0.004863318,gain,ns,0.00000268,0.00000254,1.054777939,0.292348263,pos,ns,0.002013452,0.000743696,2.707359298,0.00715823,pos,ns,2.14519434,-0.0000593,0.0000256,-2.318379928,0.021079038,neg,ns,0.954963362,Dennd1a,Dennd1a_threeUTR,2,37852361,37852410,37852409,37852410,50,-,GGTGCTTATACATTTTGAATAAGAACTTCAAGTACCTTTTGCTTCAAGCG,3' UTR,2,37798991,38287375,488385,2,Dennd1a-201,434965,Dennd1a-201;Dennd1a-206;Dennd1a-207,Dennd1a;Dennd1a;Dennd1a,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,46,227801,ENSMUSG00000035392,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10074,cg02426735,0.000136326,0.0000125,10.93800675,9.12E-24,gain,yes,-0.0000223,0.0000212,-1.054595108,0.292431775,neg,ns,0.015783477,0.006203215,2.544402485,0.011431326,pos,ns,1.941903381,-0.000320539,0.000213328,-1.502563766,0.133969535,neg,ns,0.399604849,Hoxa1,Hoxa1_Exon,6,52161076,52161125,52161124,52161125,50,+,GAGCAATAAAAATGAATTATGACTAAACGCCTTCTAACTTAATGCTTTCG,Promoter (2-3kb),6,52155595,52158317,2723,2,Hoxa1-202,-2759,Gm28308-201;Hoxa1-201;Hoxa1-202;Hoxa2-201,Gm28308;Hoxa1;Hoxa1;Hoxa2,0;-2759;-2759;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,6,15394,ENSMUSG00000029844,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
25114,cg03358610,0.0000155,0.0000184,0.840090412,0.401505138,gain,ns,0.000033,0.0000313,1.054438921,0.292503129,pos,ns,0.025567467,0.009179478,2.7852856,0.005677195,pos,ns,2.245866209,-0.000649792,0.000315681,-2.058379061,0.04038926,neg,ns,0.251914875,Ahdc1,Ahdc1_Intron,4,133013659,133013708,133013707,133013708,50,-,GAGGGACCCTTGGGGGGCCTGTGCCTGTCTGGCTGGGCAGGCGTTTCCCG,"Intron (Ahdc1-210/Ahdc1, intron 2 of 3)",4,133011260,133060820,49561,1,Ahdc1-210,2399,Ahdc1-210;Ahdc1-203;Ahdc1-204;Ahdc1-205;Ahdc1-207;Ahdc1-211;Ahdc1-209;Ahdc1-206;Ahdc1-201,Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,35,49,230793,ENSMUSG00000037692,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U4,Pr-F
17874,cg03690818,-0.00000828,0.00000153,-5.401024043,0.000000132,loss,yes,-0.00000274,0.0000026,-1.054407144,0.292517648,neg,ns,-0.001540735,0.000762566,-2.020461968,0.044195099,neg,ns,1.354625893,-0.0000134,0.0000262,-0.51094133,0.609755818,neg,ns,0.970686552,Phf21a,Phf21a_Intron,2,92279160,92279209,92279160,92279161,50,+,CGCATTTCAGTACCTTTTGGCTATCTGTGCACGTTAGACAATAACGATTG,"Intron (Phf21a-201/Phf21a, intron 4 of 15)",2,92093117,92364666,271550,1,Phf21a-201,186043,Phf21a-201;Phf21a-202;Phf21a-204;Phf21a-209;Phf21a-208;Phf21a-207;Phf21a-219;Phf21a-206;Phf21a-205;Phf21a-203;Phf21a-213;Phf21a-215,Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,21,192285,ENSMUSG00000058318,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5152,cg08070801,-0.00000612,0.0000024,-2.543941701,0.011446101,loss,ns,-0.00000431,0.00000408,-1.054394893,0.292523246,neg,ns,-0.001499988,0.001196568,-1.25357511,0.210941056,neg,ns,0.675838883,0.0000656,0.0000411,1.594319147,0.111883571,pos,ns,0.9440465,Ercc6,Ercc6_Intron,14,32547059,32547108,32547059,32547060,50,+,CGAGACAATGGAGCTGTAGGGCAGGAGAAATTAAACATGTAACACTTTTA,"Intron (Ercc6-201/Ercc6, intron 7 of 20)",14,32513521,32580990,67470,1,Ercc6-201,33538,Ercc6-201;Ercc6-204;Ercc6-205;Ercc6-203,Ercc6;Ercc6;Ercc6;Ercc6,0;33529;0;-4144,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,319955,ENSMUSG00000054051,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11957,cg14609865,0.0000237,0.00000842,2.81427979,0.005201232,gain,ns,0.0000151,0.0000143,1.054280664,0.292575441,pos,ns,0.012293498,0.004190295,2.933802473,0.003598185,pos,ns,2.443916535,-0.000355469,0.000144104,-2.46675281,0.014174934,neg,ns,0.241704966,Tbr1,Tbr1_fiveUTR,2,61804434,61804483,61804482,61804483,50,-,CTAATTAAATTACTGTCAGCAGCTAACCAATGGCAGGAGCCGTTTCATCG,Promoter (<=1kb),2,61804453,61814114,9662,1,Tbr1-201,0,Psmd14-201;Psmd14-208;Psmd14-202;Tbr1-204;Tbr1-201;Tbr1-202;Tbr1-203,Psmd14;Psmd14;Psmd14;Tbr1;Tbr1;Tbr1;Tbr1,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,27,21375,ENSMUSG00000035033,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
25347,cg11276126,-0.00000131,0.00000153,-0.856450167,0.392410364,loss,ns,0.00000273,0.00000259,1.05426254,0.292583723,pos,ns,0.000507932,0.000759467,0.668800521,0.504120455,pos,ns,0.29746568,-0.0000547,0.0000261,-2.093192781,0.037144413,neg,ns,0.956607626,Nav1,Nav1_Exon,1,135465948,135465997,135465996,135465997,50,-,CTCGTGGGTGGGGATGCTGTTGGAGCGGGTGATTCTTGGCGTGGTGGCCG,"Exon (Nav1-201/Nav1, exon 10 of 30)",1,135434580,135585355,150776,2,Nav1-201,119358,Nav1-201;Nav1-202;Nav1-208;Nav1-205;Nav1-209;Nav1-206;Nav1-207,Nav1;Nav1;Nav1;Nav1;Nav1;Nav1;Nav1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,12,215690,ENSMUSG00000009418,mapped to different genes,1,135465776,135465997,222,*,222,16,0.630630631,0.746846089,0.072072072,2.79E-10,CpGisland,TRUE,NA,NRS
3349,cg20632980,-0.0000204,0.00000933,-2.185509653,0.029599568,loss,ns,0.0000167,0.0000159,1.054074978,0.292669443,pos,ns,-0.000693939,0.004645976,-0.149363373,0.881364035,neg,ns,0.054844675,0.0000114,0.000159775,0.071632119,0.94294087,pos,ns,0.09991588,Mapre2,Mapre2_Exon,18,23804113,23804162,23804113,23804114,50,+,CGACCCAAACCCTGTCCCCAAATGGCGAGAACAACAACGACATCATCCAG,"Exon (Mapre2-201/Mapre2, exon 1 of 7)",18,23752333,23893861,141529,1,Mapre2-209,51780,Mapre2-209;Mapre2-207;Mapre2-203;Mapre2-202;Mapre2-201;Mapre2-205;Mapre2-208,Mapre2;Mapre2;Mapre2;Mapre2;Mapre2;Mapre2;Mapre2,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,5,212307,ENSMUSG00000024277,conserved gene but different region,18,23803760,23804330,571,*,571,49,0.651488617,0.816380719,0.085814361,4.88E-34,CpGisland,TRUE,U1,Pr-A
6337,cg20323441,-0.00000578,0.00000722,-0.801583404,0.423407971,loss,ns,0.0000129,0.0000123,1.054034295,0.292688038,pos,ns,-0.003027605,0.003591518,-0.842987732,0.39988525,neg,ns,0.398064615,0.0000482,0.000123512,0.389979227,0.696819714,pos,ns,0.728778815,Pknox2,Pknox2_Intron,9,36934317,36934366,36934317,36934318,50,+,CGTGTGCGGGGTTGTAAAAAATACAGATGCCAAATTAACTGGCTGTGGCA,"Intron (Pknox2-207/Pknox2, intron 4 of 10)",9,36890982,37083309,192328,2,Pknox2-207,148943,Pknox2-207;Pknox2-201;Pknox2-202;Pknox2-203;Pknox2-206;Pknox2-204;Pknox2-205;Pknox2-208;Pknox2-210;Pknox2-209,Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,47,208076,ENSMUSG00000035934,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18102,cg16632407,-0.0000165,0.00000796,-2.079027192,0.038436785,loss,ns,0.0000142,0.0000135,1.053982929,0.292711517,pos,ns,0.011541872,0.003960445,2.914286902,0.003824461,pos,ns,2.417429809,-0.00048814,0.000136199,-3.58401251,0.000392842,neg,ns,0.582421647,Pcdh9,Pcdh9_Exon,14,93885690,93885739,93885690,93885691,50,-,CGTTTACCTGTCTGGTGTGTAAGGGGCCCTTTGTCTTGAAGCCTCCTTGG,"Exon (Pcdh9-208/Pcdh9, exon 2 of 5)",14,93013410,93890669,877260,2,Pcdh9-208,4930,Pcdh9-208;Pcdh9-204;Pcdh9-202;Pcdh9-207;Pcdh9-201;Pcdh9-206;Pcdh9-203;Pcdh9-205,Pcdh9;Pcdh9;Pcdh9;Pcdh9;Pcdh9;Pcdh9;Pcdh9;Pcdh9,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,10,211712,ENSMUSG00000055421,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22914,cg24463112,-0.00000349,0.00000369,-0.945682159,0.345047239,loss,ns,-0.00000661,0.00000627,-1.053874152,0.292761243,neg,ns,-0.005042161,0.001837038,-2.744723434,0.006409356,neg,ns,2.193185582,0.0001008,0.0000632,1.595545916,0.111609129,pos,ns,0.927387539,Plekha7,Plekha7_Exon,7,116148252,116148301,116148252,116148253,50,+,CGCTTCTCCTGGGCCGACAGCCCCGTGCTGACTTCTTCAGCACTTTGTAA,"Exon (Plekha7-219/Plekha7, exon 15 of 19)",7,116123485,116237812,114328,2,Plekha7-210,89511,Plekha7-210;Plekha7-203;Plekha7-201;Plekha7-205;Plekha7-202;Plekha7-207;Plekha7-206;Plekha7-219;Plekha7-213,Plekha7;Plekha7;Plekha7;Plekha7;Plekha7;Plekha7;Plekha7;Plekha7;Plekha7,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,233765,ENSMUSG00000045659,conserved gene and region,7,116148129,116148307,179,*,179,12,0.586592179,0.779956427,0.067039106,0.000000178,CpGisland,TRUE,U11,Tr-P
15447,cg04556644,0.0000494,0.0000144,3.435494594,0.000672093,gain,ns,-0.0000257,0.0000244,-1.053824296,0.292784036,neg,ns,0.042883588,0.007156554,5.992211939,5.74E-09,pos,ns,8.241044745,-0.001561801,0.000246113,-6.34586108,7.84E-10,neg,yes,0.492004576,Tnrc6b,Tnrc6b_threeUTR,15,80929495,80929544,80929543,80929544,50,+,GACCTCGTGACCTTTTTTGGAACAGCAGCAGCACTAACTTGACCTTTTCG,3' UTR,15,80711313,80941085,229773,1,Tnrc6b-201,218182,Tnrc6b-201;Tnrc6b-208;Tnrc6b-210,Tnrc6b;Tnrc6b;Tnrc6b,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,24,213988,ENSMUSG00000047888,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2402,cg16244325,0.000000798,0.00000469,0.170150486,0.865002779,gain,ns,0.0000084,0.00000797,1.053744299,0.292820611,pos,ns,0.005932617,0.002334636,2.541131431,0.01153658,pos,ns,1.937922931,-0.000221144,0.0000803,-2.754388888,0.006227536,neg,ns,0.912019018,Gm7213,Gm7213_Intergenic_downstream,10,19265479,19265528,19265527,19265528,50,-,GTTGCGAATGTCTGGATGAATATTCATTAGAATCTCTTAATCTGCCATCG,Downstream (2-3kb),10,19262034,19262983,950,1,Gm7213-201,3494,Gm7213-201,Gm7213,3445,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,2,2,637620,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25857,cg21143330,-0.0000125,0.0000105,-1.196666355,0.232350997,loss,ns,0.0000187,0.0000178,1.053701511,0.292840175,pos,ns,0.035125158,0.005210728,6.740930667,7.69E-11,pos,yes,10.11419817,-0.001012793,0.000179197,-5.651857572,0.000000036,neg,yes,0.211947793,Cldn2,Cldn2_Intron,X,139808462,139808511,139808462,139808463,50,-,CGTTTTCTGGTTTCTCATAAGCTTCTGGTCAATATTTAATCTGGTTTATG,"Intron (Cldn2-201/Cldn2, intron 1 of 1)",20,139800828,139811386,10559,1,Cldn2-201,7634,Cldn2-201;Cldn2-203;Cldn2-202,Cldn2;Cldn2;Cldn2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,12738,ENSMUSG00000047230,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2050,cg14925722,-0.00000371,0.00000132,-2.809157917,0.005282583,loss,ns,0.00000237,0.00000224,1.053691584,0.292844714,pos,ns,-0.000061,0.000657678,-0.092755393,0.926157804,neg,ns,0.03331501,0.000000463,0.0000226,0.020459196,0.983690224,pos,ns,0.046577781,Cited2,Cited2_fiveUTR,10,17723544,17723593,17723544,17723545,50,-,CGAAGCTGGGGAATAACAACAGGATGTGCAACAACAGGATGAGGAGGGCT,Promoter (<=1kb),10,17723218,17725674,2457,1,Cited2-201,326,Cited2-201;Cited2-203;Cited2-202,Cited2;Cited2;Cited2,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,11,17684,ENSMUSG00000039910,conserved gene and region,10,17722945,17723545,601,*,601,59,0.665557404,0.891489629,0.098169717,1.77E-44,CpGisland,TRUE,U1,Pr-A
15295,cg11814784,-0.0000032,0.00000147,-2.177629778,0.030187328,loss,ns,0.00000263,0.0000025,1.053515307,0.292925324,pos,ns,0.001718268,0.000732088,2.347077991,0.019550255,pos,ns,1.708847568,-0.0000431,0.0000252,-1.712669775,0.087773223,neg,ns,0.968931328,Srsf7,Srsf7_Exon,17,80205060,80205109,80205060,80205061,50,-,CGACTGACTCAAACGAAGAAACCTGAAAGGTTTTGACCAGGTTGATTATT,"Exon (Srsf7-203/Srsf7, exon 4 of 9)",17,80200080,80207305,7226,2,Srsf7-201,2196,Srsf7-201;Srsf7-202;Srsf7-203;Srsf7-205;Srsf7-206;Srsf7-207;Srsf7-208;Srsf7-204;Ttc39d-202,Srsf7;Srsf7;Srsf7;Srsf7;Srsf7;Srsf7;Srsf7;Srsf7;Ttc39d,0;0;0;0;0;0;0;0;-2351,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,8,225027,ENSMUSG00000024097,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25562,cg11065917,0.0000266,0.00000495,5.366979984,0.000000157,gain,yes,0.00000885,0.0000084,1.053469171,0.292946424,pos,ns,-0.001583311,0.002462369,-0.643003064,0.520697427,neg,ns,0.283414568,-0.000113063,0.0000847,-1.335163768,0.182802361,neg,ns,0.852225042,Ebf3,Ebf3_Exon,7,137231224,137231273,137231224,137231225,50,-,CGTGTTTGGAATTGTTGTGCACAAACATGTTGTCTGACACGGCCAGCACG,"Exon (Ebf3-204/Ebf3, exon 8 of 16)",7,137193673,137314445,120773,2,Ebf3-204,83172,Ebf3-204;Ebf3-201;Ebf3-202;Ebf3-203;Ebf3-208;Ebf3-205;Ebf3-207,Ebf3;Ebf3;Ebf3;Ebf3;Ebf3;Ebf3;Ebf3,0;0;0;0;0;0;-4422,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,84,13593,ENSMUSG00000010476,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13987,cg08415466,8.27E-08,0.00000416,0.019862138,0.984166127,gain,ns,0.00000745,0.00000707,1.053282708,0.293031712,pos,ns,-0.001261049,0.002071795,-0.608674434,0.543186001,neg,ns,0.265051431,0.0000619,0.0000712,0.868765419,0.385647544,pos,ns,0.882743518,Mecp2,Mecp2_threeUTR,X,74035891,74035940,74035939,74035940,50,-,GGTGGACACCAGCAGGGGCTTCACCACTTCCTTGACCTCGATGCTGACCG,3' UTR,20,74026592,74085669,59078,2,Mecp2-202,49729,Mecp2-202;Mecp2-205;Mecp2-201;Mecp2-203;Mecp2-204,Mecp2;Mecp2;Mecp2;Mecp2;Mecp2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,10,17257,ENSMUSG00000031393,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21222,cg25879427,-0.0000081,0.00000752,-1.077502415,0.282093628,loss,ns,0.0000135,0.0000128,1.053048977,0.293138645,pos,ns,0.005447324,0.00374217,1.455659073,0.146498827,pos,ns,0.834165854,-0.000223546,0.000128693,-1.73705061,0.083371509,neg,ns,0.867539722,Smurf2,Smurf2_threeUTR,11,106846013,106846062,106846013,106846014,50,-,CGAGGATCTGTAAATTGTGTTGTTCTGTTGTTATGGTCAACGAAATAAAC,3' UTR,11,106820066,106920715,100650,2,Smurf2-202,74653,Smurf2-202;Smurf2-204;Smurf2-201;Smurf2-206,Smurf2;Smurf2;Smurf2;Smurf2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,4,66313,ENSMUSG00000018363,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7987,cg19540614,0.0000513,0.0000131,3.912793698,0.000112173,gain,ns,0.0000234,0.0000223,1.052743039,0.293278652,pos,ns,0.012508018,0.006524534,1.917074416,0.056147461,pos,ns,1.250669881,-0.000305511,0.000224378,-1.361588424,0.174316545,neg,ns,0.055564409,Pax2,Pax2_Intergenic_upstream,19,44674755,44674804,44674803,44674804,50,-,TTCTATTTGCATCCGGAATCGCATGTACATGAAAAATGTGTCCGCGTGCG,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-81290,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,19,44674652,44674916,265,*,265,31,0.59245283,1.339693412,0.116981132,3.55E-26,CpGisland,TRUE,U13,Hc-P
21856,cg05206371,0.0000237,0.00000688,3.448260501,0.000642238,gain,ns,0.0000123,0.0000117,1.052552356,0.293365938,pos,ns,0.006677611,0.003423802,1.950349732,0.052035448,pos,ns,1.283700704,-0.000149994,0.000117744,-1.273900575,0.203652897,neg,ns,0.089475061,Lmo1,Lmo1_Intergenic_upstream,7,109255737,109255786,109255785,109255786,50,-,CCAAGTAATTACAGCTCTTCAAGTTTCCCGTCCTCTGTTTAAAGAATTCG,Distal Intergenic,7,109138675,109175207,36533,2,Lmo1-202,-80579,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,34,66,109594,ENSMUSG00000036111,conserved gene and region,7,109255765,109255869,105,*,105,11,0.571428571,1.381578947,0.104761905,6.39E-09,CpGisland,TRUE,U15,NS
11887,cg03821480,0.00007,0.0000083,8.431971912,1.30E-15,gain,yes,-0.0000148,0.0000141,-1.052518752,0.293381322,neg,ns,-0.00090951,0.004131906,-0.220118696,0.825923599,neg,ns,0.083060125,0.000121013,0.000142096,0.851632377,0.39507556,pos,ns,0.765154449,Gm47240,Gm47240_Intergenic_downstream,9,61468628,61468677,61468628,61468629,50,+,CGCTGTGCAAATTAACAGTCCTCATCAGCAGAAACAAACAGAGCCCTTAA,Distal Intergenic,9,61472591,61472986,396,2,Gm47240-201,4309,Gm47240-201,Gm47240,4309,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13478,cg06513467,0.0000843,0.0000142,5.945723906,7.41E-09,gain,yes,-0.0000254,0.0000241,-1.052465775,0.293405576,neg,ns,0.048435831,0.007057451,6.863077213,3.68E-11,pos,yes,10.43464769,-0.00134306,0.000242705,-5.533710125,6.68E-08,neg,yes,0.377608064,Xpo7,Xpo7_Exon,14,70707324,70707373,70707372,70707373,50,-,CAATCAGGGCTGTTGGTAAATTCAACCAAGGCTTTCTCTGCCTGGAGTCG,"Exon (Xpo7-202/Xpo7, exon 2 of 28)",14,70654246,70766628,112383,2,Xpo7-202,59255,Xpo7-202;Xpo7-201;Xpo7-206;Xpo7-203;Xpo7-204,Xpo7;Xpo7;Xpo7;Xpo7;Xpo7,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,13,65246,ENSMUSG00000022100,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
21480,cg27500934,-0.0000331,0.00000734,-4.513620412,0.00000906,loss,ns,-0.0000131,0.0000125,-1.052408367,0.29343186,neg,ns,-0.00823761,0.003654744,-2.253949777,0.024897506,neg,ns,1.603844152,-0.0000238,0.000125686,-0.1890535,0.850174598,neg,ns,0.831843468,Bcl11b,Bcl11b_Intron,12,107937906,107937955,107937906,107937907,50,-,CGTGACCAGCCTAATAAAAACTGCTACAAACCGAAGGTCAACTGGCAGTT,"Intron (Bcl11b-201/Bcl11b, intron 3 of 3)",12,107910403,108003602,93200,2,Bcl11b-201,65647,Bcl11b-201;Bcl11b-202;Bcl11b-203,Bcl11b;Bcl11b;Bcl11b,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,39,58208,ENSMUSG00000048251,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1394,cg19692758,-0.00000532,0.00000362,-1.470429677,0.142459655,loss,ns,0.00000647,0.00000615,1.052310754,0.293476556,pos,ns,0.000542784,0.001802401,0.301145034,0.763505791,pos,ns,0.117187664,-0.00000164,0.000062,-0.026450388,0.978915123,neg,ns,0.909871159,1810030O07Rik,1810030O07Rik_Exon,X,12669585,12669634,12669633,12669634,50,+,AGAGCAACTGCATCACATTCCTCAGGTCCTTGTTTGTCTGCTAGTCCTCG,"Exon (1810030O07Rik-201/1810030O07Rik, exon 3 of 7)",20,12654879,12673668,18790,2,1810030O07Rik-201,4034,1810030O07Rik-201;Gm16265-201,1810030O07Rik;Gm16265,0;-1001,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,69155,ENSMUSG00000044148,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9767,cg02508227,0.00000831,0.0000165,0.502898826,0.6153925,gain,ns,-0.0000296,0.0000281,-1.052156194,0.293547338,neg,ns,0.022609891,0.008228048,2.747904571,0.006348992,pos,ns,2.19729524,-0.000627977,0.000282962,-2.219298134,0.027190052,neg,ns,0.384311932,Ascc3,Ascc3_Intron,10,50763653,50763702,50763653,50763654,50,-,CGCTTCTGGCTATTAGAATCATTAAACAACTCAGCACCTGTTAACAGCAT,"Intron (Ascc3-201/Ascc3, intron 34 of 41)",10,50592669,50851485,258817,1,Ascc3-201,170984,Ascc3-201;Ascc3-205;Ascc3-202;Gm18120-201,Ascc3;Ascc3;Ascc3;Gm18120,0;0;0;5469,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,6,77987,ENSMUSG00000038774,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
10246,cg07639660,-0.00000152,0.00000457,-0.333130114,0.739261257,loss,ns,0.00000818,0.00000777,1.052150736,0.293549837,pos,ns,0.002498913,0.00227658,1.097660992,0.273204405,pos,ns,0.563512302,-0.0000197,0.0000783,-0.252213764,0.801042977,neg,ns,0.066735777,Hoxa13,Hoxa13_Intergenic_upstream,6,52270945,52270994,52270993,52270994,50,+,ATGACCTTTGATGTGTTTAAATAACATGGCAAGTCTGAGCACACACCTCG,Distal Intergenic,6,52258853,52260880,2028,2,Hoxa13-201,-10065,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,12,15398,ENSMUSG00000038203,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
8546,cg23834814,-0.00000066,0.00000107,-0.61466178,0.539228985,loss,ns,0.00000192,0.00000182,1.052136485,0.293556364,pos,ns,0.0000229,0.000534094,0.042939653,0.965777283,pos,ns,0.015123014,-0.0000118,0.0000184,-0.644073654,0.520003916,neg,ns,0.030587277,Psmc6,Psmc6_fiveUTR,14,45329822,45329871,45329870,45329871,50,+,TCCCCTATGAGAGACGGCTTCTCATCATGGCGGACCCTAGAGATAAGGCG,Promoter (<=1kb),14,45329828,45334680,4853,1,Psmc6-207,0,Psmc6-201;Psmc6-207;Psmc6-204;Psmc6-206;Psmc6-202;Psmc6-208;Psmc6-209;Psmc6-210;Psmc6-205,Psmc6;Psmc6;Psmc6;Psmc6;Psmc6;Psmc6;Psmc6;Psmc6;Psmc6,0;0;0;0;0;0;-884;-4536;-4759,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,3,67089,ENSMUSG00000021832,conserved gene but different region,14,45329643,45330125,483,*,483,44,0.66873706,0.816129032,0.091097309,8.21E-32,CpGisland,TRUE,U1,Pr-A
12584,cg19754710,0.000098,0.0000115,8.500204543,8.10E-16,gain,yes,-0.0000206,0.0000196,-1.052130388,0.293559156,neg,ns,0.012198633,0.005736704,2.126418227,0.034258233,pos,ns,1.46523504,-0.000393824,0.000197285,-1.996218428,0.046784571,neg,ns,0.077280813,Tjp1,Tjp1_fiveUTR,7,65527613,65527662,65527613,65527614,50,-,CGCCGATGGCCATCTGCAGCACCGTCAGGTATTTCTGGTACTTCATCTTG,Promoter (<=1kb),7,65342617,65527696,185080,2,Tjp1-205,34,Tjp1-205;Tjp1-206,Tjp1;Tjp1,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,13,21872,ENSMUSG00000030516,conserved gene but different region,7,65527007,65528016,1010,*,1010,121,0.7,1.001787002,0.11980198,4.07E-102,CpGisland,TRUE,U3,Pr-B
2973,cg05787618,0.0000017,0.00000527,0.321787079,0.747830875,gain,ns,0.00000941,0.00000895,1.052007311,0.29361553,pos,ns,0.003264531,0.002621812,1.245143008,0.214019573,pos,ns,0.669546506,0.0000789,0.0000902,0.87505749,0.382220089,pos,ns,0.892782086,Lrmda,Lrmda_Intron,14,22198682,22198731,22198682,22198683,50,-,CGTATATTGGAAGGTACTAACGAAGTAATATACTGTTAGGAAAACAATCA,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,178970,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206,Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17449,cg14646408,0.00000117,0.00000412,0.284667611,0.776088877,gain,ns,-0.00000736,0.000007,-1.051873255,0.29367694,neg,ns,-0.001260961,0.002049328,-0.615304689,0.538804952,neg,ns,0.268568421,-0.000209068,0.0000705,-2.966497672,0.003246356,neg,ns,0.918580366,Nrxn3,Nrxn3_Exon,12,90321917,90321966,90321965,90321966,50,+,GCCCATCCCTTCCTTACAGCCAGAAGCTCTAATGCAGCTAGATCACTCCG,"Exon (Nrxn3-213/Nrxn3, exon 18 of 19)",12,88722986,90332878,1609893,1,Nrxn3-213,1598931,Nrxn3-213;Nrxn3-208;Nrxn3-205;Nrxn3-201;Nrxn3-210;Nrxn3-214;Nrxn3-203;Nrxn3-202,Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,39,18191,ENSMUSG00000066392,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16833,cg12482375,0.0000214,0.00000898,2.384637837,0.017696937,gain,ns,-0.0000161,0.0000153,-1.051650755,0.293778884,neg,ns,0.039575792,0.004471608,8.850460483,6.81E-17,pos,yes,16.16699777,-0.001737232,0.000153778,-11.29699479,5.14E-25,neg,yes,0.799875722,Cltc,Cltc_Exon,11,86705252,86705301,86705300,86705301,50,+,TTATTGTACAACAACTTAGCAGCATCATACATTTTTTCATCATAACAACG,"Exon (Cltc-202/Cltc, exon 23 of 32)",11,86694351,86757565,63215,2,Cltc-202,52264,Cltc-202;Cltc-201;Cltc-203;Cltc-205,Cltc;Cltc;Cltc;Cltc,0;0;0;-2822,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,10,67300,ENSMUSG00000047126,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1465,cg21675655,-0.000000513,0.00000171,-0.299484263,0.76477127,loss,ns,0.00000306,0.00000291,1.051520088,0.293838765,pos,ns,0.003347276,0.000852351,3.927111302,0.000106001,pos,ns,3.974688942,-0.0000498,0.0000293,-1.699606466,0.090208078,neg,ns,0.952167985,Usp9x,Usp9x_Exon,X,13100459,13100508,13100459,13100460,50,-,CGAAAGGGGAATTAGAAGTGCTTTTAGAAGCTGCTATTGATCTTAGTAAA,"Exon (Usp9x-206/Usp9x, exon 5 of 17)",20,13071498,13123449,51952,1,Usp9x-206,28961,Usp9x-206;Usp9x-204;Usp9x-201,Usp9x;Usp9x;Usp9x,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,10,22284,ENSMUSG00000031010,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25795,cg03286705,0.00000545,0.00000364,1.494800253,0.135983802,gain,ns,0.00000651,0.00000619,1.051467724,0.293862763,pos,ns,0.002682173,0.001813947,1.478639662,0.140252001,pos,ns,0.853090934,-0.00000347,0.0000624,-0.055560834,0.955727458,neg,ns,0.050328171,Uncx,Uncx_Intergenic_downstream,5,139548973,139549022,139549021,139549022,50,-,TGCCCAATGATATCCCTCATTGTTCTGTCGCTTATATTGATGTTGCTGCG,Downstream (<1kb),5,139543898,139545268,1371,1,Uncx-202,5124,Uncx-201;Uncx-202,Uncx;Uncx,0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,59,88,22255,ENSMUSG00000029546,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
21272,cg18184418,0.00000421,0.00000109,3.876381164,0.000129438,gain,ns,-0.00000194,0.00000185,-1.051362208,0.293911126,neg,ns,-0.001240563,0.000540668,-2.294501268,0.022429856,neg,ns,1.649173514,0.0000142,0.0000186,0.764257733,0.445294994,pos,ns,0.976727268,Ssbp3,Ssbp3_Exon,4,107036928,107036977,107036928,107036929,50,-,CGTTGCAGAATTACGGCAGCGGCATGAGACCACCACCCAACTCCCTCGGC,"Exon (Ssbp3-201/Ssbp3, exon 10 of 18)",4,106911470,107049694,138225,1,Ssbp3-201,125458,Ssbp3-201;Ssbp3-215;Ssbp3-202;Ssbp3-203;Ssbp3-213;Ssbp3-211;Ssbp3-212;Ssbp3-204;Ssbp3-210;Ssbp3-208;Ssbp3-217,Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,18,72475,ENSMUSG00000061887,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19548,cg18889628,-0.0000429,0.0000113,-3.812835902,0.000165745,loss,ns,0.0000201,0.0000191,1.051357332,0.293913361,pos,ns,-0.003942011,0.005605978,-0.703179911,0.482471391,neg,ns,0.316528434,0.0000228,0.000192789,0.118040681,0.906111871,pos,ns,0.594012999,Gm12448,Gm12448_Intergenic_upstream,3,99666155,99666204,99666203,99666204,50,-,ACAGCTGCATGCATTGATTTAGAAGCTTGCTACTTGGGGCTCCAGGAACG,Distal Intergenic,3,99544408,99545062,655,2,Gm12448-201,-121142,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22723,cg01061817,-0.0000331,0.0000085,-3.898255151,0.000118787,loss,ns,-0.0000152,0.0000144,-1.051329622,0.293926063,neg,ns,0.001899072,0.004230826,0.448865622,0.653842209,pos,ns,0.184527047,-0.0000607,0.000145498,-0.417423395,0.676657689,neg,ns,0.207972101,Meis2,Meis2_Intergenic_downstream,2,115856824,115856873,115856824,115856825,50,+,CGGCTCTAATTCAAAAAGGCAATCGGGCAGAAAAAGCCCTCAACATTACC,Distal Intergenic,2,115864227,115868867,4641,2,Meis2-219,11994,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,97,17536,ENSMUSG00000027210,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
2096,cg20124296,-0.00000566,0.00000113,-5.014155798,0.000000898,loss,yes,0.00000201,0.00000192,1.05129797,0.293940572,pos,ns,0.000672597,0.000561387,1.198098063,0.231794028,pos,ns,0.634897757,-0.000019,0.0000193,-0.983171622,0.326289674,neg,ns,0.040645561,Skida1,Skida1_Exon,2,18048217,18048266,18048217,18048218,50,-,CGGGATGTTTTTCAGCAGATCTGTGAAGACTTGGGAGAGGGCAAACATTT,Promoter (<=1kb),2,18044083,18049051,4969,2,Skida1-202,785,Skida1-205;Skida1-202;Skida1-201;Skida1-203;Skida1-204,Skida1;Skida1;Skida1;Skida1;Skida1,0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,31,72668,ENSMUSG00000054074,conserved gene and region,2,18047779,18048218,440,*,440,50,0.640909091,1.121019108,0.113636364,3.03E-41,CpGisland,TRUE,NA,NRS
15761,cg24193247,-0.000000953,0.00000216,-0.44033716,0.659999804,loss,ns,-0.00000386,0.00000368,-1.051295247,0.29394182,neg,ns,0.000849489,0.001077009,0.788748225,0.430861953,pos,ns,0.365661855,-0.0000497,0.000037,-1.342248249,0.180497682,neg,ns,0.936599138,Dctn1,Dctn1_Exon,6,83192807,83192856,83192807,83192808,50,-,CGCTCCTTGGATTTCCTCATTGAACTGCTGCACAAGGATCAGCTGGATGA,"Exon (Dctn1-201/Dctn1, exon 15 of 28)",6,83165920,83200116,34197,1,Dctn1-201,26887,Dctn1-201;Dctn1-203;Dctn1-208;Dctn1-205;Dctn1-204;Dctn1-210;Dctn1-202;Dctn1-206;Dctn1-207;Dctn1-212;Dctn1-209;Dctn1-211,Dctn1;Dctn1;Dctn1;Dctn1;Dctn1;Dctn1;Dctn1;Dctn1;Dctn1;Dctn1;Dctn1;Dctn1,0;0;0;0;0;0;0;4196;-1488;-1687;-2246;-4158,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,13191,ENSMUSG00000031865,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25099,cg17860485,-0.00000675,0.00000132,-5.102568403,0.000000585,loss,yes,0.00000236,0.00000225,1.051291801,0.2939434,pos,ns,0.000552316,0.00065873,0.838455442,0.402420992,pos,ns,0.395319373,-0.00000642,0.0000227,-0.283193123,0.777217818,neg,ns,0.038246666,Fam76a,Fam76a_Exon,4,132922351,132922400,132922351,132922352,50,-,CGCGCACCTTGCACAGCTGCTGCCCCTGAGACAGCGCCTCGAAGGGGAAG,Promoter (<=1kb),4,132899213,132922558,23346,2,Fam76a-201,158,Fam76a-201;Fam76a-202;Fam76a-203,Fam76a;Fam76a;Fam76a,0;0;-1442,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,230789,ENSMUSG00000028878,conserved gene but different region,4,132921963,132922982,1020,*,1020,113,0.687254902,0.938263163,0.110784314,4.49E-91,CpGisland,TRUE,U1,Pr-A
14644,cg20555017,-0.0000357,0.00000545,-6.554683367,2.33E-10,loss,yes,0.00000973,0.00000926,1.05124911,0.29396297,pos,ns,-0.004331902,0.002712024,-1.597295011,0.11121876,neg,ns,0.953821953,0.000191282,0.0000933,2.05092424,0.04111465,pos,ns,0.932864752,Rbfox2,Rbfox2_threeUTR,15,77084156,77084205,77084204,77084205,50,+,GTCACTTCAGTAGGGGGCAAATCGGCTGTAGCCACCTCGGTATAAACTCG,3' UTR,15,77078990,77306928,227939,2,Rbfox2-204,222723,Rbfox2-204;Rbfox2-203;Rbfox2-202;Rbfox2-206;Rbfox2-208;Rbfox2-209;Rbfox2-201;Rbfox2-211;Rbfox2-215;Rbfox2-207,Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,20,93686,ENSMUSG00000033565,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26402,cg21502778,0.000039,0.00000535,7.290087501,2.59E-12,gain,yes,-0.00000955,0.00000909,-1.051132406,0.294016473,neg,ns,-0.001054314,0.002661812,-0.396088739,0.692312045,neg,ns,0.159698112,0.000117852,0.0000915,1.28744771,0.19889863,pos,ns,0.1206747,Gsx1,Gsx1_Intergenic_downstream,5,147223635,147223684,147223635,147223636,50,+,CGCACGAAACAAAATACTTGAATCCTGAAAAAGACCCTTTGTAAGTTTCT,Distal Intergenic,5,147188696,147190947,2252,1,Gsx1-201,34939,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,12,20,14842,ENSMUSG00000053129,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
15341,cg09174855,-0.00000712,0.00000179,-3.97486315,0.0000877,loss,ns,0.0000032,0.00000304,1.051117339,0.294023382,pos,ns,-0.00024357,0.000891594,-0.273184432,0.78489335,neg,ns,0.10518935,-0.0000101,0.0000307,-0.327801518,0.743283014,neg,ns,0.037722954,Mbd3,Mbd3_Exon,10,80399111,80399160,80399111,80399112,50,+,CGCTCATTCACCTATAGTAAAAGACATCCCTGTGGCCGGCCGACAGCCCC,Promoter (<=1kb),10,80392539,80399550,7012,2,Mbd3-201,390,Mbd3-206;Mbd3-201;Mbd3-204;Mbd3-203;Mbd3-202;Mbd3-205;Uqcr11-202;Uqcr11-201;Uqcr11-203,Mbd3;Mbd3;Mbd3;Mbd3;Mbd3;Mbd3;Uqcr11;Uqcr11;Uqcr11,-3941;0;0;0;-3392;-3785;7606;7670;7635,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,17192,ENSMUSG00000035478,conserved gene but different region,10,80398667,80399604,938,*,938,123,0.73347548,1.001510417,0.131130064,2.20E-109,CpGisland,TRUE,U1,Pr-A
25166,cg24561861,-0.00000617,0.00000428,-1.440179749,0.150825685,loss,ns,-0.00000765,0.00000728,-1.050993027,0.294080381,neg,ns,-0.005780626,0.002132647,-2.710540707,0.007091521,neg,ns,2.149260582,0.00016253,0.0000733,2.216075645,0.027412274,pos,ns,0.908134576,Ctbp2,Ctbp2_Intergenic_upstream,7,133224119,133224168,133224119,133224120,50,+,CGTAATGAGGGAGCGTAATATCTTAGTTTGCATCAATATGGAAATAACTG,Distal Intergenic,7,133025702,133124354,98653,2,Ctbp2-218,-99765,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,4,13017,ENSMUSG00000030970,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17064,cg23538060,0.00000064,0.00000274,0.234019954,0.815123961,gain,ns,-0.00000488,0.00000465,-1.05074037,0.294196252,neg,ns,-0.000649311,0.00136128,-0.476985535,0.633708495,neg,ns,0.198110471,-0.0000545,0.0000468,-1.163399451,0.24556217,neg,ns,0.915415005,Mef2d,Mef2d_Exon,3,88168282,88168331,88168282,88168283,50,+,CGCCCAGCCCCAGAGCCTGAGGCTGAGGGCTCAGCTGTGAAGAGGATGCG,"Exon (Mef2d-201/Mef2d, exon 10 of 11)",3,88142372,88172086,29715,1,Mef2d-201,25910,Mef2d-201;Mef2d-204;Mef2d-202;Mef2d-203;Mef2d-205;Mef2d-207,Mef2d;Mef2d;Mef2d;Mef2d;Mef2d;Mef2d,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,10,17261,ENSMUSG00000001419,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6732,cg09349617,-0.0000029,0.00000542,-0.535376229,0.592773577,loss,ns,-0.00000967,0.00000921,-1.050542747,0.294286905,neg,ns,0.000315362,0.002697915,0.116891082,0.907022057,pos,ns,0.042382152,-0.00020599,0.0000928,-2.220172707,0.027130012,neg,ns,0.54542854,Gsk3b,Gsk3b_Exon,16,38217101,38217150,38217149,38217150,50,+,TATCATCTTTAGGATTCGTCAGGAACAGGACATTTCACCTCAGGAGTGCG,"Exon (Gsk3b-202/Gsk3b, exon 9 of 12)",16,38089001,38246084,157084,1,Gsk3b-201,128100,Gsk3b-201;Gsk3b-202;Gsk3b-205,Gsk3b;Gsk3b;Gsk3b,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,11,56637,ENSMUSG00000022812,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22760,cg14881322,-0.00000438,0.00000503,-0.870574071,0.384660397,loss,ns,0.00000898,0.00000855,1.050483183,0.294314232,pos,ns,0.005370567,0.002504525,2.144345781,0.032782486,pos,ns,1.484358109,-0.000163572,0.0000861,-1.899124039,0.058476361,neg,ns,0.517185145,Meis2,Meis2_Exon,2,115921695,115921744,115921743,115921744,50,+,AAGTCCTGTGTCTTGCGCTAACTGTTTCTTCTGCTCTTCGGAAGGGTACG,"Exon (Meis2-201/Meis2, exon 9 of 12)",2,115863064,116065047,201984,2,Meis2-201,143303,Meis2-201;Meis2-203;Meis2-205;Meis2-206;Meis2-204;Meis2-202;Meis2-216;Meis2-217,Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,15,97,17536,ENSMUSG00000027210,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17429,cg07227189,-0.00000452,0.00000207,-2.189485847,0.029306756,loss,ns,0.00000368,0.00000351,1.050326468,0.294386138,pos,ns,0.001080769,0.001027779,1.051557823,0.293821471,pos,ns,0.531916471,-0.0000378,0.0000353,-1.069142111,0.285837424,neg,ns,0.937474431,Ankrd17,Ankrd17_Exon,5,90243954,90244003,90244002,90244003,50,+,ACCACTGCTATTCTGATTGCTATGGCGAGGCACCATGTGAGGCTTAGGCG,"Exon (Ankrd17-201/Ankrd17, exon 29 of 34)",5,90227166,90366577,139412,2,Ankrd17-201,122574,Ankrd17-201;Ankrd17-203;Ankrd17-202;Ankrd17-205;Ankrd17-207,Ankrd17;Ankrd17;Ankrd17;Ankrd17;Ankrd17,0;0;0;0;-4266,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,11,12,81702,ENSMUSG00000055204,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5621,cg21389718,-0.0000942,0.0000174,-5.417892365,0.000000121,loss,yes,0.000031,0.0000296,1.050302825,0.294396987,pos,ns,-0.010565399,0.008658021,-1.220301838,0.223277934,neg,ns,0.651154195,-0.0000382,0.000297749,-0.128177692,0.898091465,neg,ns,0.729187225,Pbx3,Pbx3_Intron,2,34360029,34360078,34360077,34360078,50,-,ATTCATAGAAAATCCCCAAATCAACAATTAGAAGCATATGTAAATGTGCG,"Intron (Pbx3-202/Pbx3, intron 2 of 7)",2,34171457,34372038,200582,2,Pbx3-202,11960,Pbx3-202;Pbx3-201;Pbx3-206;Pbx3-207;Pbx3-209;Pbx3-204;Pbx3-205;Pbx3-203,Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,82,18516,ENSMUSG00000038718,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20196,cg06247149,0.0000225,0.00000334,6.71699404,8.87E-11,gain,yes,0.00000597,0.00000568,1.050293061,0.294401468,pos,ns,0.008278144,0.001664263,4.974059595,0.00000109,pos,ns,5.96329136,-0.000152102,0.0000572,-2.65755515,0.008278957,neg,ns,0.066336605,Hoxc12,Hoxc12_Exon,15,102938395,102938444,102938395,102938396,50,+,CGCCGGAGGGAACTCTCAGACCGCTTGAATCTTAGTGACCAGCAGGTCAA,"Exon (Hoxc12-201/Hoxc12, exon 2 of 2)",15,102936757,102938609,1853,1,Hoxc12-201,1638,Hoxc12-201,Hoxc12,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,6,15421,ENSMUSG00000050328,conserved gene and region,15,102938261,102938417,157,*,157,17,0.624203822,1.112083333,0.108280255,6.80E-14,CpGisland,TRUE,U13,Hc-P
4834,cg09551637,-0.00000646,0.0000029,-2.227760484,0.026613913,loss,ns,-0.00000517,0.00000492,-1.050162116,0.294461561,neg,ns,-0.004180649,0.001442523,-2.898150057,0.004021293,neg,ns,2.395634292,0.0000804,0.0000496,1.619851793,0.106280906,pos,ns,0.922602668,Agbl5,Agbl5_Exon,5,30894400,30894449,30894448,30894449,50,+,ACTGGACGCTCAGTAAACAGCATCCCTGCTGCCTGCCATGACAATGGGCG,"Exon (Agbl5-201/Agbl5, exon 9 of 11)",5,30888852,30896687,7836,1,Agbl5-201,5548,Agbl5-203;Agbl5-201;Agbl5-207;Agbl5-213;Agbl5-205;Agbl5-218;Agbl5-214;Agbl5-208;Agbl5-215;Agbl5-211;Agbl5-209;Agbl5-202;Agbl5-204;Agbl5-210;Agbl5-217;Agbl5-216;Agbl5-212;Agbl5-206,Agbl5;Agbl5;Agbl5;Agbl5;Agbl5;Agbl5;Agbl5;Agbl5;Agbl5;Agbl5;Agbl5;Agbl5;Agbl5;Agbl5;Agbl5;Agbl5;Agbl5;Agbl5,0;0;0;0;0;0;0;0;0;0;0;0;0;4118;0;-548;-690;-1484,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,5,231093,ENSMUSG00000029165,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14086,cg25431896,0.0000312,0.00000576,5.415857532,0.000000123,gain,yes,0.0000103,0.00000979,1.049968545,0.294550409,pos,ns,0.00332452,0.002868282,1.159062941,0.247322561,pos,ns,0.606736266,0.0000292,0.0000986,0.295673483,0.767677401,pos,ns,0.104211593,Evx2,Evx2_threeUTR,2,74654159,74654208,74654207,74654208,50,+,TTTTATGTACCGAGTCTCTTATCCGTCTCTCCTAATGACTTCCCTTAGCG,3' UTR,2,74652991,74659557,6567,2,Evx2-201,5349,Evx2-201;Evx2-202,Evx2;Evx2,0;5211,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,8,35,14029,ENSMUSG00000001815,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
22543,cg01739251,0.0000804,0.00000366,21.95828025,4.05E-65,gain,yes,-0.00000654,0.00000622,-1.049955192,0.294556539,neg,ns,0.005848127,0.001823456,3.207166645,0.001480529,pos,ns,2.829583201,0.000131414,0.0000627,2.095636355,0.03692528,pos,ns,0.098306604,Tal1,Tal1_Promoter,4,115056612,115056661,115056660,115056661,50,+,TGCCAAATTAAAATGAATCATTTGGCCCATAATGGCCGAGGCGCTTATCG,Promoter (<=1kb),4,115056426,115071755,15330,1,Tal1-201,186,Tal1-201;Tal1-202;Tal1-203;Tal1-204,Tal1;Tal1;Tal1;Tal1,0;0;-1150;-2847,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,3,4,21349,ENSMUSG00000028717,conserved gene and region,4,115056648,115057443,796,*,796,76,0.639447236,0.935920047,0.095477387,4.01E-56,CpGisland,TRUE,NA,NRS
24168,cg16715342,-0.00000798,0.00000195,-4.087062649,0.0000557,loss,ns,0.00000348,0.00000332,1.049897031,0.294583238,pos,ns,0.00025349,0.000971246,0.260994827,0.794269794,pos,ns,0.100031953,-0.0000658,0.0000334,-1.97050219,0.049670408,neg,ns,0.034397204,Setd1b,Setd1b_Exon,5,123141089,123141138,123141137,123141138,50,-,GAAGGATGTTTTGAGATCAGCGTCTAATAACTCAAGCCCTATAGAAGCCG,Promoter (1-2kb),5,123142193,123168629,26437,1,Setd1b-204,-1104,Setd1b-202;Setd1b-206;Setd1b-204;Setd1b-201,Setd1b;Setd1b;Setd1b;Setd1b,0;0;0;-1819,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,9,208043,ENSMUSG00000038384,mapped to different genes,5,123141109,123141393,285,*,285,26,0.603508772,1.033328685,0.09122807,4.95E-19,CpGisland,TRUE,U1,Pr-A
26837,cg23627350,-0.00000426,0.00000194,-2.192224161,0.029106562,loss,ns,0.00000347,0.0000033,1.049723658,0.294662837,pos,ns,0.000526262,0.000967222,0.544096802,0.586765974,pos,ns,0.231535079,0.0000152,0.0000333,0.458328272,0.647037744,pos,ns,0.945909628,Lamc1,Lamc1_Exon,1,153241972,153242021,153241972,153241973,50,-,CGGATGTCACACTGCCCATTGGTGGAGCCCAAGGCATGGCAGTCACACCT,"Exon (Lamc1-201/Lamc1, exon 16 of 28)",1,153218922,153332786,113865,2,Lamc1-201,90765,Lamc1-201;Lamc1-205,Lamc1;Lamc1,0;-2646,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,6,226519,ENSMUSG00000026478,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16056,cg17881452,-0.0000055,0.00000195,-2.825061773,0.005033687,loss,ns,0.00000347,0.00000331,1.049720251,0.294664402,pos,ns,0.002173213,0.000969101,2.242503976,0.025635426,pos,ns,1.591159458,-0.000073,0.0000333,-2.189219689,0.029326278,neg,ns,0.94342833,Bnc2,Bnc2_Intron,4,84307282,84307331,84307282,84307283,50,+,CGCTTTGACAGATTACCTTGTCATTATGCATCCTGGAGCCTTTTAAACAA,"Intron (Bnc2-201/Bnc2, intron 6 of 7)",4,84275095,84675034,399940,2,Bnc2-201,367703,Bnc2-201;Bnc2-202;Bnc2-214;Bnc2-215;Bnc2-206;Bnc2-211;Bnc2-205;Bnc2-217;Bnc2-207;Bnc2-212,Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,91,242509,ENSMUSG00000028487,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23227,cg01132510,-0.0000202,0.0000088,-2.294226267,0.022445843,loss,ns,0.0000157,0.000015,1.049595822,0.294721539,pos,ns,-0.002334411,0.004379996,-0.532971096,0.594435445,neg,ns,0.225895302,-0.000089,0.000150628,-0.590621968,0.555204071,neg,ns,0.770021955,Eri3,Eri3_Exon,4,117564732,117564781,117564780,117564781,50,+,CTCCCTGTGGTGTTCCGGAGTTCTGCTCCATATCCACCAGAAAGCTGGCG,Promoter (<=1kb),4,117564758,117674297,109540,1,Eri3-206,0,Eri3-201;Eri3-205;Eri3-206,Eri3;Eri3;Eri3,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,97,140546,ENSMUSG00000033423,conserved gene and region,4,117564742,117564808,67,*,67,7,0.641791045,1.015151515,0.104477612,0.00000982,CpGisland,TRUE,U10,Tr-S
4695,cg25179208,-0.00000167,0.00000139,-1.193742082,0.233491573,loss,ns,0.00000249,0.00000237,1.049314141,0.294850912,pos,ns,-0.000597101,0.000694272,-0.860038785,0.390432282,neg,ns,0.40845428,0.0000388,0.0000239,1.625136755,0.10514962,pos,ns,0.955833566,Nrf1,Nrf1_Exon,6,30126316,30126365,30126316,30126317,50,+,CGCAGCAGCCGTCGGAGCACTTACTGGAGTCCAAGATGCTAATGGTAAGA,"Exon (Nrf1-211/Nrf1, exon 11 of 12)",6,30047988,30153458,105471,1,Nrf1-211,78328,Nrf1-211;Nrf1-210;Nrf1-207;Nrf1-208;Nrf1-209;Nrf1-205;Nrf1-206;Nrf1-204;Nrf1-202;Nrf1-201;Nrf1-203;Nrf1-220;Nrf1-219;Nrf1-214,Nrf1;Nrf1;Nrf1;Nrf1;Nrf1;Nrf1;Nrf1;Nrf1;Nrf1;Nrf1;Nrf1;Nrf1;Nrf1;Nrf1,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,5,18181,ENSMUSG00000058440,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9560,cg16809235,0.0000421,0.00000692,6.084069794,3.45E-09,gain,yes,-0.0000123,0.0000118,-1.049306351,0.29485449,neg,ns,0.003883268,0.003446611,1.12669167,0.260744259,pos,ns,0.583785246,-0.0000393,0.000118529,-0.331705174,0.740336034,neg,ns,0.183775441,Foxg1,Foxg1_Promoter,12,49379707,49379756,49379755,49379756,50,-,CCCTGGTGTGAAGACCTCTTACTGAGAAGTTTAGTTCACTACTGTTCTCG,Promoter (2-3kb),12,49382660,49384364,1705,1,Foxg1-202,-2953,Foxg1-202;Foxg1-203;Foxg1-204;Foxg1-201,Foxg1;Foxg1;Foxg1;Foxg1,0;-3044;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,11,27,15228,ENSMUSG00000020950,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
20882,cg03775588,0.0000241,0.00000206,11.70425293,1.88E-26,gain,yes,-0.00000367,0.0000035,-1.049140136,0.29493085,neg,ns,0.002442507,0.001025401,2.382002875,0.017821716,pos,ns,1.749050481,-0.0000126,0.0000353,-0.356899122,0.721410144,neg,ns,0.022308269,Pax6,Pax6_Exon,2,105682292,105682341,105682292,105682293,50,+,CGGAGCGGAGCACTGTCACAAAGTGACAAGGCTGCCACAAGCGCCCCGAC,"Exon (Pax6-221/Pax6, exon 1 of 2)",2,105668900,105697364,28465,1,Pax6-206,13392,Pax6-206;Pax6-207;Pax6-210;Pax6-214;Pax6-208;Pax6-202;Pax6-205;Pax6-225;Pax6-204;Pax6-201;Pax6-203;Pax6-224;Pax6-219;Pax6-221;Pax6-213;Pax6-211;Pax6-222;Pax6-212;Pax6-215;Pax6-223;Pax6-209;Pax6-216,Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,31,78,18508,ENSMUSG00000027168,conserved gene and region,2,105682176,105682419,244,*,244,18,0.524590164,1.074626866,0.073770492,1.12E-11,CpGisland,TRUE,NA,NRS
4437,cg02212975,-0.0000123,0.00000556,-2.216294673,0.02739712,loss,ns,-0.0000099,0.00000944,-1.049117719,0.294941149,neg,ns,-0.008516453,0.002765092,-3.079988606,0.002255483,neg,ns,2.6467604,0.000126637,0.0000951,1.331740503,0.18392382,pos,ns,0.818500588,Actn4,Actn4_Exon,7,28911509,28911558,28911557,28911558,50,+,GCATGGTAGAAGCTGGACACATAGGTCATTATGGCCTTCTCGTCGGGCCG,"Exon (Actn4-201/Actn4, exon 8 of 21)",7,28893248,28962340,69093,2,Actn4-201,50782,Actn4-201;Actn4-206;Actn4-211;Actn4-202;Actn4-208;Actn4-204;Actn4-207,Actn4;Actn4;Actn4;Actn4;Actn4;Actn4;Actn4,0;0;0;0;-3823;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,9,60595,ENSMUSG00000054808,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24461,cg14879438,-0.00000134,0.00000164,-0.820791195,0.412395933,loss,ns,0.00000292,0.00000278,1.048951422,0.295017561,pos,ns,-0.0000381,0.000814835,-0.046709948,0.962774478,neg,ns,0.016475431,0.0000426,0.000028,1.519543117,0.129645068,pos,ns,0.960730434,Ago1,Ago1_threeUTR,4,126439460,126439509,126439508,126439509,50,+,TGGAAAGCTTTCTTCTATCCAGTGAGGTAACAGCGTTCTGCCTTCAAGCG,3' UTR,4,126435012,126468421,33410,2,Ago1-207,28912,Ago1-207;Ago1-201;Ago1-206;Ago1-202;Ago1-205;Ago1-204,Ago1;Ago1;Ago1;Ago1;Ago1;Ago1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,11,13,236511,ENSMUSG00000041530,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17307,cg20031233,-0.0000442,0.000011,-4.023366741,0.0000721,loss,ns,0.0000196,0.0000187,1.048804247,0.295085198,pos,ns,-0.000912594,0.005469717,-0.166844764,0.867600972,neg,ns,0.06167997,-0.000207126,0.000188103,-1.10113177,0.271693552,neg,ns,0.294778517,Ankfn1,Ankfn1_Intron,11,89569920,89569969,89569920,89569921,50,-,CGTGGATTTCAGGCTTTGCCAAACCCCAACTCCTGAGAAATAACTTGAGA,"Intron (Ankfn1-208/Ankfn1, intron 4 of 21)",11,89391238,89841266,450029,2,Ankfn1-208,271297,Ankfn1-208;Ankfn1-202;Ankfn1-205,Ankfn1;Ankfn1;Ankfn1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,15,382543,ENSMUSG00000047773,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18300,cg22892466,0.000125937,0.0000116,10.843641,1.93E-23,gain,yes,-0.0000207,0.0000197,-1.048685194,0.295139919,neg,ns,0.016959994,0.005780359,2.934072886,0.003595137,pos,ns,2.444284524,-0.000185249,0.000198786,-0.931900397,0.352113197,neg,ns,0.37285025,Gm48316,Gm48316_Intergenic_upstream,13,94703567,94703616,94703615,94703616,50,+,TGTTTAATCCGTGGAAATGGTGCTGGTCCTATGTAAACAAGCCAAGTGCG,Distal Intergenic,13,94752270,94752593,324,1,Gm48316-201,-48654,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,36,42,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22321,cg13589830,-0.000036,0.0000126,-2.858062204,0.0045509,loss,ns,-0.0000224,0.0000214,-1.048103554,0.295407358,neg,ns,-0.010703943,0.006272425,-1.706508082,0.088914974,neg,ns,1.051025092,-0.000368904,0.000215708,-1.710200364,0.088229366,neg,ns,0.049859341,Arntl,Arntl_fiveUTR,7,113207450,113207499,113207498,113207499,50,-,GATTGGTGGGCGGGGGGCCGGGCCTGGGCCGGCGGGGAGCGGATTGGTCG,Promoter (<=1kb),7,113207465,113314126,106662,1,Arntl-201,0,Arntl-201;Arntl-203;Arntl-204,Arntl;Arntl;Arntl,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,6,11865,ENSMUSG00000055116,conserved gene but different region,7,113207255,113208466,1212,*,1212,121,0.691419142,0.844647948,0.099834984,1.89E-91,CpGisland,TRUE,U1,Pr-A
21103,cg05039548,0.0000525,0.00000623,8.428748407,1.33E-15,gain,yes,-0.0000111,0.0000106,-1.048073239,0.295421301,neg,ns,0.009203553,0.003101344,2.967601492,0.003235047,pos,ns,2.490119384,-0.000113082,0.000106655,-1.060258672,0.289852301,neg,ns,0.091935028,Barhl2,Barhl2_Promoter,5,106464977,106465026,106464977,106464978,50,-,CGGCACTAATTAGGCCACATTAAAACCGTAGTGTGTCCCTAATGGTGCGT,Promoter (6-7kb),5,106452523,106458166,5644,2,Barhl2-201,-6860,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,8,27,104382,ENSMUSG00000034384,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
24906,cg01227169,-0.00000336,0.00000114,-2.956482724,0.003350627,loss,ns,0.00000202,0.00000193,1.048010508,0.295450156,pos,ns,0.001466722,0.000565168,2.595194203,0.009903377,pos,ns,2.004216681,-0.0000602,0.0000194,-3.099603915,0.002115568,neg,ns,0.968942812,Tssk3,Tssk3_Exon,4,129489072,129489121,129489120,129489121,50,-,CAAGTGCTTGCTAGCCATGGATGCCAACTAACTTCTTCAATTGAAGGCCG,"Exon (Tssk3-201/Tssk3, exon 2 of 2)",4,129489014,129491022,2009,2,Tssk3-201,1901,Bsdc1-201;Fam229a-201;Fam229a-202;Tssk3-201,Bsdc1;Fam229a;Fam229a;Tssk3,27491;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,58864,ENSMUSG00000000411,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23407,cg05949171,0.0000254,0.00000424,5.972888895,6.39E-09,gain,yes,-0.00000756,0.00000721,-1.047887161,0.295506897,neg,ns,0.000814528,0.002112707,0.385537705,0.700103496,pos,ns,0.154837753,0.0000452,0.0000727,0.622287859,0.534210037,pos,ns,0.114485649,Cdh13,Cdh13_fiveUTR,8,118283749,118283798,118283749,118283750,50,+,CGAGGCAGAGCCTCTCCTCAAAGCCTGGCTCCCACGGAAAATATGCTCAG,Promoter (<=1kb),8,118283755,118852758,569004,1,Cdh13-205,0,Cdh13-201;Cdh13-205;Cdh13-204;Cdh13-203;Cdh13-206,Cdh13;Cdh13;Cdh13;Cdh13;Cdh13,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,4,12554,ENSMUSG00000031841,conserved gene and region,8,118283569,118284088,520,*,520,36,0.607692308,0.75036075,0.069230769,7.96E-22,CpGisland,TRUE,NA,NRS
12307,cg05968532,-0.00000699,0.0000225,-0.31122056,0.755842132,loss,ns,0.00004,0.0000382,1.047817555,0.29553892,pos,ns,0.018408089,0.01118083,1.646397287,0.100695352,pos,ns,0.996990576,-0.000681933,0.000384508,-1.773521776,0.077123992,neg,ns,0.776890397,Gm18541,Gm18541_Intergenic_upstream,9,63880877,63880926,63880877,63880878,50,-,CGCTTTGTGAGCAAATGGCCTACAGCTTGCAATGAATTAAAAGACATGGG,Distal Intergenic,9,63898265,63898802,538,1,Gm18541-201,-17388,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,13,100417338,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
11649,cg09229936,-0.00000108,0.00000108,-1.000891981,0.317659649,loss,ns,-0.00000192,0.00000184,-1.047729755,0.295579317,neg,ns,-0.000716964,0.000537748,-1.333272052,0.183421455,neg,ns,0.736549866,0.0000203,0.0000185,1.098963076,0.272636924,pos,ns,0.968010436,Parp6,Parp6_Exon,9,59628586,59628635,59628634,59628635,50,-,GAGAAGAGGCACAGTTGGTTCAAGGCAAGTGGTACCATCAAGAAGTTCCG,"Exon (Parp6-201/Parp6, exon 9 of 24)",9,59617284,59650285,33002,1,Parp6-201,11302,Parp6-201;Parp6-202;Parp6-208;Parp6-211;Parp6-207;Parp6-206;Parp6-203;Parp6-204;Parp6-209;Parp6-210,Parp6;Parp6;Parp6;Parp6;Parp6;Parp6;Parp6;Parp6;Parp6;Parp6,0;0;0;11224;11209;11206;0;7030;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,5,67287,ENSMUSG00000025237,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4013,cg21614952,0.0000289,0.00000937,3.081655681,0.002243269,gain,ns,0.0000167,0.0000159,1.047646993,0.295617399,pos,ns,0.006260595,0.004663724,1.342402553,0.180447727,pos,ns,0.743648583,-0.000199313,0.000160385,-1.242713082,0.214912742,neg,ns,0.521588529,Gm50479,Gm50479_Exon,8,26438961,26439010,26439009,26439010,50,-,ATTTGCTCCCGAGGCAGCAATAACCATCCATGCATCGGTCATTTAACACG,"Exon (Gm45580-201/Gm45580-201, exon 1 of 2)",8,26237222,26237407,186,1,Gm50479-201,201788,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,21,,NA,mapped to different genes,8,26438812,26439195,384,*,384,19,0.552083333,0.65026738,0.049479167,2.73E-09,CpGisland,TRUE,U15,NS
1777,cg24786986,0.0000013,0.00000428,0.304994342,0.76057513,gain,ns,-0.00000761,0.00000726,-1.047567549,0.295653958,neg,ns,0.004564825,0.002128238,2.144885332,0.032738933,pos,ns,1.484935474,-0.000171708,0.0000732,-2.346060953,0.019602724,neg,ns,0.074149999,Foxp2,Foxp2_fiveUTR,6,15185529,15185578,15185529,15185530,50,+,CGGACGCCAAAACAATCACAGAGCTGCTTGATTTGTTTTAATTACCAGCA,Promoter (<=1kb),6,15185563,15394815,209253,1,Foxp2-210,0,Foxp2-207;Foxp2-213;Foxp2-208;Foxp2-211;Foxp2-217;Foxp2-203;Foxp2-216;Foxp2-205;Foxp2-204;Foxp2-201;Foxp2-210,Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,65,114142,ENSMUSG00000029563,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3902,cg11642773,-0.000011,0.00000268,-4.109473483,0.0000508,loss,ns,0.00000477,0.00000456,1.047540402,0.295666451,pos,ns,0.000369788,0.001334516,0.277095484,0.781891468,pos,ns,0.106853526,-0.0000794,0.0000459,-1.73096377,0.084453239,neg,ns,0.953059095,Celf4,Celf4_Intron,18,25709104,25709153,25709152,25709153,50,+,TTTTATTGAACTTTATAAATTCCAATTAGCAGACCCCTGGGCAATAAGCG,"Intron (Celf4-202/Celf4, intron 1 of 12)",18,25477632,25753983,276352,2,Celf4-202,44830,Celf4-202;Celf4-201;Celf4-203;Celf4-207;Celf4-206;Celf4-209;Celf4-205,Celf4;Celf4;Celf4;Celf4;Celf4;Celf4;Celf4,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,59,108013,ENSMUSG00000024268,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21297,cg17977808,-0.00000295,0.00000172,-1.716694722,0.087033844,loss,ns,-0.00000306,0.00000292,-1.047432152,0.295716272,neg,ns,0.002542003,0.000855422,2.971635102,0.003194028,pos,ns,2.495661255,-0.0000838,0.0000294,-2.848149013,0.004691301,neg,ns,0.956280178,Tmem59,Tmem59_threeUTR,4,107190612,107190661,107190660,107190661,50,+,CTCCGCACAGAGCTTCATAACCTCTTCATGGACTTTTTATCTTCAAGCCG,3' UTR,4,107178399,107200996,22598,1,Tmem59-201,12213,Tmem59-201;Tmem59-204;Tmem59-202;Tmem59-205;Tmem59-206;Tmem59-203,Tmem59;Tmem59;Tmem59;Tmem59;Tmem59;Tmem59,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,3,56374,ENSMUSG00000028618,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5799,cg03152557,-0.00000757,0.00000188,-4.028972196,0.0000705,loss,ns,-0.00000334,0.00000319,-1.047384095,0.295738391,neg,ns,-0.001229311,0.000934832,-1.315007249,0.189479369,neg,ns,0.72243807,0.0000238,0.0000321,0.74169129,0.458835926,pos,ns,0.954893698,Pank1,Pank1_Exon,19,34821753,34821802,34821801,34821802,50,+,AGTCTCCTCCGTAAATGTCCTTCACCAGTTTATCAACATTGGTGCTGTCG,"Exon (Pank1-201/Pank1, exon 4 of 7)",19,34806940,34879455,72516,2,Pank1-201,57653,Pank1-201;Pank1-202;Pank1-204,Pank1;Pank1;Pank1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,75735,ENSMUSG00000033610,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27934,cg09472187,-0.0000199,0.00000773,-2.569143114,0.010662589,loss,ns,0.0000138,0.0000131,1.047359004,0.295749941,pos,ns,0.002181654,0.003846236,0.567217839,0.570976694,pos,ns,0.243381619,-0.00010811,0.000132272,-0.817329403,0.414367916,neg,ns,0.823681216,Rps6kc1,Rps6kc1_Intergenic_downstream,1,190654520,190654569,190654520,190654521,50,-,CGATGTGTCAACCTACAACATCAATTACATTGAAATGCAATGCATGGCAG,Distal Intergenic,1,190808888,190810463,1576,2,Rps6kc1-207,155943,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,14,29,320119,ENSMUSG00000089872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19084,cg09393675,0.0000695,0.00000498,13.9698875,9.78E-35,gain,yes,-0.00000886,0.00000846,-1.047289158,0.295782092,neg,ns,0.000617972,0.00247786,0.249397468,0.803218512,pos,ns,0.095166291,0.0000415,0.0000852,0.486814012,0.626734149,pos,ns,0.13168575,Neurod2,Neurod2_Promoter,11,98329654,98329703,98329702,98329703,50,+,GGCCATATGGGCTTGGCACGTCACGGGCAGCAGCTATCACATGAGAGACG,Promoter (<=1kb),11,98325415,98329648,4234,2,Neurod2-201,-6,Neurod2-201,Neurod2,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,22,18013,ENSMUSG00000038255,conserved gene but different region,11,98329512,98329756,245,*,245,22,0.657142857,0.835658915,0.089795918,5.08E-16,CpGisland,TRUE,U13,Hc-P
7214,cg11992145,0.0000196,0.00000752,2.606403426,0.009591869,gain,ns,-0.0000134,0.0000128,-1.046968001,0.295929957,neg,ns,-0.000411551,0.003742931,-0.109954301,0.912516763,neg,ns,0.039759149,-0.000218741,0.000128719,-1.699364349,0.090253717,neg,ns,0.794906264,Gria3,Gria3_Exon,X,41654916,41654965,41654964,41654965,50,+,GACTCCAAGGTCAGCCTCAATGTCACCACAACCGGGTACCCTTAGTGACG,"Exon (Gria3-202/Gria3, exon 15 of 17)",20,41401128,41676585,275458,1,Gria3-202,253788,Gria3-202;Gria3-201;Gria3-208;Gria3-206;Gria3-209,Gria3;Gria3;Gria3;Gria3;Gria3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,26,53623,ENSMUSG00000001986,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27723,cg05709201,-0.00000703,0.000009,-0.781065953,0.43535976,loss,ns,0.000016,0.0000153,1.046942353,0.295941767,pos,ns,-0.002288491,0.004477968,-0.511055804,0.609675754,neg,ns,0.214901076,0.000120121,0.000153997,0.780020257,0.435974091,pos,ns,0.732915321,Taf4,Taf4_Exon,2,179913494,179913543,179913542,179913543,50,+,TCTAAACAAAATATGAGGTCCCTGAGGTTGACCCGCGTGATTCTTTGTCG,"Exon (Taf4-201/Taf4, exon 15 of 15)",2,179912152,179976646,64495,2,Taf4-201,63103,Taf4-201;Taf4-204,Taf4;Taf4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,228980,ENSMUSG00000039117,conserved gene and region,2,179913485,179913596,112,*,112,10,0.598214286,0.998217469,0.089285714,0.000000188,CpGisland,TRUE,U10,Tr-S
20346,cg22378817,0.0000756,0.00000514,14.71219442,1.58E-37,gain,yes,0.00000914,0.00000873,1.046923976,0.29595023,pos,ns,0.009711774,0.00255822,3.796301835,0.000176664,pos,ns,3.752853112,-0.0000967,0.000088,-1.099138921,0.272560348,neg,ns,0.082686544,Hoxc5,Hoxc5_Exon,15,103009788,103009837,103009788,103009789,50,-,CGTGTTCAGTTCCAGCCGGGGGCCGTATGACTATGGATCTAATTCCTTTT,"Exon (Hoxc6-202/Hoxc6, exon 2 of 3)",15,102967443,103015676,48234,1,Hoxc5-202,42345,Hoxc5-202;Hoxc5-201;Hoxc6-202;Hoxc6-203;Hoxc6-201,Hoxc5;Hoxc5;Hoxc6;Hoxc6;Hoxc6,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,72,134,15424,ENSMUSG00000022485,mapped to different genes,15,103009647,103009812,166,*,166,14,0.602409639,0.948184415,0.084337349,5.77E-10,CpGisland,TRUE,U13,Hc-P
19395,cg06432300,0.0000054,0.00000349,1.54695816,0.122893568,gain,ns,-0.0000062,0.00000593,-1.046898576,0.295961927,neg,ns,0.011598349,0.001736328,6.679813375,1.11E-10,pos,yes,9.955380347,-0.000176137,0.0000597,-2.949760625,0.003422324,neg,ns,0.912318879,Foxn3,Foxn3_Intron,12,99220499,99220548,99220547,99220548,50,-,CAAGAATGGTCACTGAATAGGCTGAAAAGAACATCTGCCCCAGCGCAGCG,"Intron (Foxn3-201/Foxn3, intron 4 of 5)",12,99190078,99393797,203720,2,Foxn3-201,173249,Foxn3-201;Foxn3-209;Foxn3-202;Foxn3-212;Foxn3-211;Foxn3-206;Foxn3-204,Foxn3;Foxn3;Foxn3;Foxn3;Foxn3;Foxn3;Foxn3,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,17,71375,ENSMUSG00000033713,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13953,cg14665342,-0.000014,0.00000795,-1.756937084,0.079915736,loss,ns,0.0000141,0.0000135,1.046845176,0.295986519,pos,ns,0.004805946,0.0039557,1.214942016,0.225312766,pos,ns,0.6472142,-0.0000974,0.000136036,-0.71593518,0.474570306,neg,ns,0.690256647,Spata18,Spata18_Exon,5,73675267,73675316,73675267,73675268,50,-,CGTGTGGCCTGCTCTCATGGAGAATGACTGTGTCATTATGAAGGGAGAAG,"Exon (Spata18-202/Spata18, exon 10 of 13)",5,73651379,73679512,28134,1,Spata18-202,23888,Spata18-202;Spata18-201;Spata18-203;Spata18-204,Spata18;Spata18;Spata18;Spata18,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,73472,ENSMUSG00000029155,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12315,cg09731876,0.000145678,0.0000164,8.90889787,4.48E-17,gain,yes,-0.0000291,0.0000278,-1.04678429,0.296014561,neg,ns,0.0291826,0.00813857,3.58571613,0.000390388,pos,ns,3.408503131,-0.0000947,0.000279885,-0.338469957,0.735238189,neg,ns,0.517161846,Wdr7,Wdr7_Intron,18,63894303,63894352,63894351,63894352,50,-,TTAACTAACAACTCATTAGCTTAGTTGATGTTTTTGTCAATATTAATTCG,"Intron (Wdr7-201/Wdr7, intron 21 of 27)",18,63708685,63989776,281092,1,Wdr7-201,185618,Gm19076-201;Wdr7-201;Wdr7-204,Gm19076;Wdr7;Wdr7,4679;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,11,104082,ENSMUSG00000040560,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1452,cg18934851,0.000264862,0.0000242,10.94132763,8.88E-24,gain,yes,0.000043,0.0000411,1.046715387,0.296046298,pos,ns,-0.014203185,0.0120483,-1.178853908,0.239360369,neg,ns,0.620947755,0.001587471,0.00041434,3.831323437,0.000154294,pos,ns,0.573915586,C1ql3,C1ql3_fiveUTR,2,13011694,13011743,13011694,13011695,50,-,CGCCGGAGCAATTTATAGGCACCCAAGGCACAGAGGAAGGGGAGCCGCTT,Promoter (<=1kb),2,13003457,13011806,8350,2,C1ql3-201,63,C1ql3-201,C1ql3,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,9,227580,ENSMUSG00000049630,conserved gene but different region,2,13011690,13011698,9,*,9,4,1,1.8,0.444444444,0.00000224,CpGisland,TRUE,U3,Pr-B
18032,cg16461797,-0.00000422,0.00000392,-1.077330271,0.282170376,loss,ns,0.00000697,0.00000665,1.046693245,0.296056496,pos,ns,-0.001315981,0.001949654,-0.67498143,0.500190671,neg,ns,0.300864413,0.00000806,0.000067,0.120173891,0.904423246,pos,ns,0.928291066,Pola1,Pola1_Intron,X,93375538,93375587,93375586,93375587,50,-,ATAATGCAAATTTCCACTTTAAACTCAAAGGTAATTACAGTATTTTAACG,"Intron (Pola1-201/Pola1, intron 36 of 36)",20,93304767,93632155,327389,2,Pola1-201,256568,Pola1-201,Pola1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,59,62,18968,ENSMUSG00000006678,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13012,cg21467362,-0.0000317,0.00000589,-5.386465982,0.000000142,loss,yes,-0.0000105,0.00001,-1.04668878,0.296058553,neg,ns,-0.008740113,0.00293196,-2.980979185,0.003100829,neg,ns,2.508522216,0.00028427,0.00010083,2.819301492,0.005122578,pos,ns,0.848355893,Gm4842,Gm4842_Intergenic_upstream,18,69125295,69125344,69125295,69125296,50,-,CGCAGATGGGGCCTGCAGTCATTGTAGAAAATAAAAATTTACAAGATGCC,Distal Intergenic,18,69256288,69257122,835,1,Gm4842-201,-130993,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,10,225681,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9964,cg12926657,-0.0000245,0.00000667,-3.667846894,0.000287793,loss,ns,-0.0000119,0.0000113,-1.046423972,0.296180547,neg,ns,-0.00811311,0.003322164,-2.442115956,0.015159963,neg,ns,1.819301863,0.000316237,0.000114249,2.767962692,0.005980069,pos,ns,0.823732091,Satb1,Satb1_Intron,17,51760769,51760818,51760769,51760770,50,-,CGGCGTATTTGGCTGCCTGATCAGATTAGTGAAAATGTTCTTCAGAACAA,"Intron (Satb1-208/Satb1, intron 9 of 10)",17,51736187,51832672,96486,2,Satb1-208,71854,Satb1-208;Satb1-213;Satb1-204;Satb1-214;Satb1-203;Satb1-211;Satb1-207,Satb1;Satb1;Satb1;Satb1;Satb1;Satb1;Satb1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,28,36,20230,ENSMUSG00000023927,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11272,cg10527773,-0.0000124,0.00000414,-2.995381251,0.002962051,loss,ns,0.00000736,0.00000704,1.046332843,0.296222537,pos,ns,0.002216826,0.002061415,1.075390752,0.283036074,pos,ns,0.548158208,-0.0000435,0.0000709,-0.613609511,0.539923373,neg,ns,0.909735164,Arhgef6,Arhgef6_Intron,X,57303161,57303210,57303209,57303210,50,-,TTTAAAAGATATAAACTGCAAAAGTCTAAAGCCCAAACATTCCCTAGGCG,"Intron (Arhgef6-201/Arhgef6, intron 3 of 21)",20,57231485,57338729,107245,2,Arhgef6-201,35519,Arhgef6-201;Arhgef6-208;Arhgef6-203;Arhgef6-206,Arhgef6;Arhgef6;Arhgef6;Arhgef6,0;0;0;-2302,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,5,73341,ENSMUSG00000031133,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19767,cg15698659,-0.0000142,0.00000436,-3.24445919,0.001305239,loss,ns,-0.00000776,0.00000741,-1.046272367,0.296250405,neg,ns,0.007062128,0.002171684,3.251913305,0.001272595,pos,ns,2.895309687,-0.000255572,0.0000747,-3.422041194,0.000704956,neg,ns,0.895345535,Ppp4r3a,Ppp4r3a_threeUTR,12,101045499,101045548,101045547,101045548,50,+,GTAAACAGTGCAAAAAAGCATACTCACTTCATGCAGTCACATCGTCTTCG,3' UTR,12,101039409,101083663,44255,2,Ppp4r3a-201,38115,Ppp4r3a-201;Ppp4r3a-205;Ppp4r3a-202;Ppp4r3a-208;Ppp4r3a-206,Ppp4r3a;Ppp4r3a;Ppp4r3a;Ppp4r3a;Ppp4r3a,0;0;0;-1954;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,10,68734,ENSMUSG00000041846,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15479,cg07753742,-0.00000466,0.0000012,-3.89534723,0.000120153,loss,ns,0.00000213,0.00000203,1.046210976,0.296278696,pos,ns,0.000552954,0.000595975,0.927813039,0.354226376,pos,ns,0.450719105,-0.0000149,0.0000205,-0.728183741,0.467050791,neg,ns,0.037596439,Usp38,Usp38_Exon,8,81014080,81014129,81014080,81014081,50,-,CGACGGACAGCTCATAATCAGCTTCAGGCCGTTGTGAATGTAGTCCAGGA,Promoter (<=1kb),8,80980733,81014928,34196,2,Usp38-201,799,Usp38-201;Usp38-202,Usp38;Usp38,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,74841,ENSMUSG00000038250,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
12033,cg16630461,-0.000119381,0.0000183,-6.516987943,2.90E-10,loss,yes,0.0000326,0.0000311,1.046041433,0.296356837,pos,ns,-0.028025929,0.009117305,-3.073926838,0.002300415,neg,ns,2.638193823,0.000437905,0.000313543,1.396633628,0.163522865,pos,ns,0.811334394,Gcg,Gcg_Intron,2,62460407,62460456,62460407,62460408,50,-,CGCCTCCTGAAGGTCAATGCATAAATCATCTTGTGCAGATGGCTGTTTAT,"Intron (Gm13561-201/Gm13561-201, intron 1 of 4)",2,62476571,62480678,4108,2,Gcg-203,20271,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,3,14526,ENSMUSG00000000394,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26325,cg27183989,0.0000191,0.0000139,1.379418466,0.168760024,gain,ns,0.0000246,0.0000236,1.045996203,0.296377686,pos,ns,0.00988169,0.006900766,1.431970074,0.153159869,pos,ns,0.814855015,-0.000335396,0.000237317,-1.413282487,0.158575986,neg,ns,0.798603195,Gm14111,Gm14111_Intergenic_downstream,2,146745588,146745637,146745636,146745637,50,+,TAATAAGCCCAGAAATTACAATTGCCTCCCTGCCGAATCTGTGATAGGCG,Distal Intergenic,2,146754707,146755705,999,2,Gm14111-201,10068,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,15,17,668918,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11446,cg14449811,0.0000171,0.00000589,2.907567114,0.003905332,gain,ns,-0.0000105,0.00001,-1.04588427,0.296429285,neg,ns,0.010994345,0.002932692,3.748891275,0.000211861,pos,ns,3.673948307,-0.00048233,0.000100855,-4.782405025,0.00000268,neg,ns,0.100690416,Zfp692,Zfp692_Exon,11,58307693,58307742,58307741,58307742,50,+,GTGGTGCCTCCTCAAGGAGCGGCTGGGCTTCTCCCTGCACTCGCAGCTCG,Promoter (<=1kb),11,58307069,58314613,7545,1,Zfp692-202,624,Zfp692-202;Zfp692-201,Zfp692;Zfp692,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,103836,ENSMUSG00000037243,conserved gene and region,11,58307462,58307836,375,*,375,37,0.677333333,0.860251721,0.098666667,3.44E-28,CpGisland,TRUE,U4,Pr-F
25911,cg26788887,0.00000462,0.00000787,0.586268013,0.55812205,gain,ns,0.000014,0.0000134,1.045606438,0.296557387,pos,ns,-0.000260081,0.003918968,-0.066364596,0.947130335,neg,ns,0.023590253,0.000151784,0.000134773,1.126223411,0.260942052,pos,ns,0.930431403,Mid2,Mid2_Exon,X,140678304,140678353,140678304,140678305,50,+,CGCTTCCAGAAGGCTTCAGTCAGTGGGCCCAATTCCCCTAGTGAGAGCCG,"Exon (Mid2-204/Mid2, exon 2 of 2)",20,140664599,140678708,14110,1,Mid2-204,13705,Mid2-204;Mid2-202;Mid2-201;Mid2-203,Mid2;Mid2;Mid2;Mid2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,11,23947,ENSMUSG00000000266,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12420,cg07566172,-0.00000315,0.00000237,-1.328949566,0.184841911,loss,ns,0.00000422,0.00000403,1.04553564,0.296590037,pos,ns,-0.000174909,0.001181462,-0.148044175,0.882404153,neg,ns,0.054332457,0.0000993,0.0000406,2.444771004,0.015050973,pos,ns,0.060040088,Klf7,Klf7_Promoter,1,64121654,64121703,64121654,64121655,50,+,CGCGTGTGACCATGTAAGGTAAACAGGGGGCTCATGAAGTCACTGAGGAC,Promoter (<=1kb),1,64079103,64122282,43180,2,Klf7-203,579,Klf7-202;Klf7-201;Klf7-203,Klf7;Klf7;Klf7,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,3,21,93691,ENSMUSG00000025959,mapped to different genes,1,64121602,64121657,56,*,56,9,0.714285714,1.272727273,0.160714286,4.27E-09,CpGisland,TRUE,U1,Pr-A
8207,cg15211207,-0.00000355,0.00000302,-1.175412199,0.240731812,loss,ns,0.00000536,0.00000513,1.045445701,0.296631517,pos,ns,-0.003685602,0.001501521,-2.454579281,0.01465433,neg,ns,1.834034022,0.000103518,0.0000516,2.004713262,0.045862995,pos,ns,0.954560438,Gm5246,Gm5246_Promoter,19,44849632,44849681,44849680,44849681,50,+,TGGTCATTTAATGCTTAAGTGCACGCTAGACAGCCCTGTCATCGCCCGCG,Promoter (1-2kb),19,44851009,44851979,971,1,Gm5246-201,-1328,Gm5246-201,Gm5246,-1328,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,20,383450,NA,mapped to different genes,19,44849655,44849739,85,*,85,9,0.694117647,0.881336406,0.105882353,0.000000223,CpGisland,TRUE,U11,Tr-P
21541,cg15302547,-0.0000438,0.00000838,-5.21977728,0.000000329,loss,yes,-0.0000149,0.0000142,-1.045415182,0.296645593,neg,ns,-0.002333196,0.004172618,-0.559168316,0.576450585,neg,ns,0.239237916,0.0000697,0.000143496,0.485456933,0.627695167,pos,ns,0.165086819,Gpr61,Gpr61_Exon,3,108166702,108166751,108166702,108166703,50,-,CGTCCCTGAGCTCATTATGTCACAGCTGGGGAACAGCTGGCCAGTTTTTT,"Exon (Gm12524-201/Gm12524-201, exon 1 of 2)",3,108148321,108154882,6562,2,Gpr61-201,-11869,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,4,229714,ENSMUSG00000046793,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11923,cg00863447,0.00000282,0.00000295,0.95808009,0.338768972,gain,ns,0.00000523,0.000005,1.045105094,0.29678864,pos,ns,0.000206607,0.001465868,0.140945097,0.888004857,pos,ns,0.051584659,0.0000414,0.0000504,0.820574738,0.412519072,pos,ns,0.939451135,Gm13626,Gm13626_Intergenic_downstream,2,61685987,61686036,61685987,61685988,50,+,CGCCATATTAGCGTGATCACACCAAAATACCAGCTTGTGTTTACAGTTTC,Distal Intergenic,2,61706893,61707591,699,2,Gm13626-201,21555,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,8,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16107,cg18860518,0.0000522,0.0000185,2.816470285,0.005166789,gain,ns,-0.0000329,0.0000315,-1.044952811,0.296858907,neg,ns,0.01392183,0.009219084,1.510109795,0.132033994,pos,ns,0.87931424,-0.0000231,0.000317044,-0.072946806,0.941895491,neg,ns,0.263454769,Zfp407,Zfp407_Intron,18,84414428,84414477,84414428,84414429,50,-,CGACAGCCTGTCATCTGTTGGAGTTTATCATCTACCCACTGGTACCATTC,"Intron (Zfp407-201/Zfp407, intron 2 of 2)",18,84128027,84558425,430399,2,Zfp407-201,143948,Zfp407-201;Zfp407-202;Zfp407-203,Zfp407;Zfp407;Zfp407,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,32,240476,ENSMUSG00000048410,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10181,cg06060272,0.000036,0.00000417,8.6321492,3.21E-16,gain,yes,0.00000741,0.00000709,1.044879776,0.296892611,pos,ns,0.003546948,0.002077566,1.707261394,0.088774745,pos,ns,1.051710566,-0.0000277,0.0000714,-0.387116861,0.698935318,neg,ns,0.073055587,Hoxa7,Hoxa7_Exon,6,52217328,52217377,52217328,52217329,50,-,CGGCTCGGCATTTTGGAACAGAGAAGCCCCCGCCGTATATTTGCTAAAAA,"Exon (Hoxa7-201/Hoxa7, exon 1 of 2)",6,52214491,52220393,5903,2,Hoxa7-205,3016,Gm28308-201;Hoxa3-201;Hoxa3-203;Hoxa7-205;Hoxa7-201;Hoxa7-202;Hoxa7-204;Hoxa7-203,Gm28308;Hoxa3;Hoxa3;Hoxa7;Hoxa7;Hoxa7;Hoxa7;Hoxa7,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,10,15404,ENSMUSG00000038236,conserved gene and region,6,52217250,52217463,214,*,214,20,0.546728972,1.271538919,0.093457944,5.89E-15,CpGisland,TRUE,U3,Pr-B
1555,cg20677048,-0.00000134,0.00000612,-0.21915291,0.826675156,loss,ns,-0.0000109,0.0000104,-1.044821495,0.296919509,neg,ns,0.0000898,0.003045192,0.029472938,0.976506367,pos,ns,0.010324921,-0.0000994,0.000104724,-0.948807551,0.343457566,neg,ns,0.892282746,Zfp521,Zfp521_Intron,18,13694632,13694681,13694680,13694681,50,+,GAAGCATATACTGTACGTGACTTAAAATGCTAGAATATTGACACAAAGCG,"Intron (Zfp521-201/Zfp521, intron 7 of 7)",18,13687013,13972787,285775,2,Zfp521-201,278106,Zfp521-201;Zfp521-205;Zfp521-204,Zfp521;Zfp521;Zfp521,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,81,225207,ENSMUSG00000024420,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17259,cg11992861,0.00000782,0.00000806,0.970724862,0.332442088,gain,ns,-0.0000143,0.0000137,-1.04477444,0.296941226,neg,ns,-0.008083563,0.004009253,-2.016226893,0.044638486,neg,ns,1.350290548,0.0000471,0.000137878,0.341317991,0.733095436,pos,ns,0.760904618,Nog,Nog_Intergenic_upstream,11,89318447,89318496,89318447,89318448,50,-,CGAGGACAATATTTCAGTGTGGAGCCAAGCCACAGGGATCCACTCTATAA,Distal Intergenic,11,89300638,89302332,1695,2,Nog-201,-16164,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,36,18121,ENSMUSG00000048616,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7505,cg00720104,0.00000854,0.00000178,4.805695566,0.00000241,gain,ns,-0.00000315,0.00000302,-1.044765263,0.296945462,neg,ns,0.002778311,0.000884364,3.141591293,0.001842555,pos,ns,2.734579532,-0.0000724,0.0000304,-2.379286557,0.017951158,neg,ns,0.038451829,Ppp2r2b,Ppp2r2b_fiveUTR,18,42898829,42898878,42898877,42898878,50,-,CTTGCGTGGGAACCAGAAGCCGGCAGACAAGTATCCATGATCCCTCCCCG,Promoter (<=1kb),18,42637432,42899503,262072,2,Ppp2r2b-204,625,Ppp2r2b-204;Ppp2r2b-202;Ppp2r2b-201;Ppp2r2b-203;Ppp2r2b-208;Ppp2r2b-207;Ppp2r2b-205;Ppp2r2b-206,Ppp2r2b;Ppp2r2b;Ppp2r2b;Ppp2r2b;Ppp2r2b;Ppp2r2b;Ppp2r2b;Ppp2r2b,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,9,15,72930,ENSMUSG00000024500,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
3532,cg18192106,0.0000746,0.0000166,4.500543892,0.0000096,gain,ns,-0.0000294,0.0000281,-1.044669153,0.296989823,neg,ns,-0.022784631,0.008245131,-2.763404504,0.006062159,neg,ns,2.217372643,0.001187472,0.000283549,4.18788413,0.0000367,pos,ns,0.631881835,Pax8,Pax8_Intron,2,24428320,24428369,24428368,24428369,50,+,AAAAATAACCGAATCTTTTCCTTTTTTATCTTGACCAATCTCATTTCACG,"Intron (Pax8-201/Pax8, intron 10 of 11)",2,24420560,24475599,55040,2,Pax8-201,47230,Pax8-201;Pax8-204;Pax8-208;Pax8-203,Pax8;Pax8;Pax8;Pax8,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,6,18510,ENSMUSG00000026976,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21362,cg25568340,0.000001,0.00000343,0.292107444,0.770399867,gain,ns,0.00000608,0.00000582,1.044650362,0.296998498,pos,ns,0.000175189,0.001704857,0.102758568,0.918221029,pos,ns,0.037052765,0.0000992,0.0000586,1.691251212,0.091793842,pos,ns,0.930982746,Slc6a17,Slc6a17_Exon,3,107473654,107473703,107473654,107473655,50,-,CGAACAACAGCCCCACGAGGAATGCAAAGACACAGCAGCCCACTACAGAG,"Exon (Slc6a17-208/Slc6a17, exon 10 of 12)",3,107467543,107518018,50476,2,Slc6a17-208,44315,Slc6a17-208;Slc6a17-201;Slc6a17-206;Slc6a17-210,Slc6a17;Slc6a17;Slc6a17;Slc6a17,0;0;0;-4949,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,229706,ENSMUSG00000027894,conserved gene and region,3,107473564,107473716,153,*,153,10,0.549019608,0.885416667,0.065359477,0.00000333,CpGisland,TRUE,NA,NRS
6550,cg10405348,-0.0000175,0.00000782,-2.232482543,0.026297052,loss,ns,0.0000139,0.0000133,1.044574141,0.297033683,pos,ns,0.002989681,0.00389316,0.767931645,0.443112344,pos,ns,0.353486152,-0.000249724,0.000133885,-1.865205209,0.063097236,neg,ns,0.860728983,Tenm2,Tenm2_Intergenic_upstream,11,37679538,37679587,37679586,37679587,50,+,AAGTAATAGATGAGCATTCCTCTAAAAGCCAATTTCATTAAATACCATCG,Distal Intergenic,11,36944205,37235964,291760,2,Tenm2-207,-443574,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,9,84,23964,ENSMUSG00000049336,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21739,cg13374681,0.00000298,0.0000037,0.806935857,0.420322098,gain,ns,0.00000656,0.00000628,1.044573454,0.297034,pos,ns,-0.000759664,0.001839324,-0.41301272,0.679882817,neg,ns,0.167565935,0.0000632,0.0000633,0.998799115,0.318670999,pos,ns,0.945114426,Zfhx3,Zfhx3_Exon,8,108951185,108951234,108951185,108951186,50,+,CGTTTTCGCACTCAAATGACCAATCTGCAGCTGAAGGTCCTCAAGTCATG,"Exon (Zfhx3-204/Zfhx3, exon 15 of 16)",8,107942644,108961630,1018987,1,Zfhx3-204,1008541,Zfhx3-204;Zfhx3-201,Zfhx3;Zfhx3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,46,177,11906,ENSMUSG00000038872,conserved gene and region,8,108950856,108951192,337,*,337,26,0.578635015,0.921733642,0.077151335,3.97E-17,CpGisland,TRUE,U10,Tr-S
453,cg11180624,0.0000304,0.00000426,7.120640224,7.53E-12,gain,yes,0.00000756,0.00000724,1.044508445,0.297064012,pos,ns,0.00287841,0.002121725,1.356636854,0.175883735,pos,ns,0.754774319,-0.000149829,0.000073,-2.053416737,0.040870894,neg,ns,0.133469001,Dync1i1,Dync1i1_Exon,6,6006298,6006347,6006346,6006347,50,+,ACAATGCAGACTATGTGTACGATGTCATGTGGTCCCCCGTGCATCCTGCG,"Exon (Dync1i1-203/Dync1i1, exon 15 of 17)",6,5725639,6028039,302401,1,Dync1i1-203,280659,Dync1i1-203;Dync1i1-202;Dync1i1-204;Dync1i1-201;Dync1i1-206,Dync1i1;Dync1i1;Dync1i1;Dync1i1;Dync1i1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,9,13426,ENSMUSG00000029757,conserved gene and region,6,6006221,6006480,260,*,260,19,0.615384615,0.771995624,0.073076923,3.18E-12,CpGisland,TRUE,U2,Pr-W
23271,cg18744854,0.0000511,0.00000683,7.486220027,7.41E-13,gain,yes,0.0000121,0.0000116,1.044353986,0.297135327,pos,ns,0.003468597,0.003397996,1.020777079,0.30815601,pos,ns,0.511229358,0.0000135,0.000116857,0.115910333,0.907798655,pos,ns,0.761034192,Eri3,Eri3_Intron,4,117645073,117645122,117645073,117645074,50,+,CGTGTTTGTGATGGGACTGACAGTGCATGGAGGAGGCTGATTATACACGA,"Intron (Eri3-201/Eri3, intron 7 of 8)",4,117550365,117674297,123933,1,Eri3-201,94708,Eri3-201;Eri3-206;Eri3-203,Eri3;Eri3;Eri3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,82,97,140546,ENSMUSG00000033423,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25658,cg25470283,-0.0000119,0.00000559,-2.125432731,0.034340985,loss,ns,0.00000992,0.0000095,1.044347855,0.297138159,pos,ns,-0.004975699,0.002783289,-1.787704821,0.074800341,neg,ns,1.126096425,0.0000654,0.0000957,0.682911,0.495173111,pos,ns,0.868302218,1110002E22Rik,1110002E22Rik_Exon,3,138066630,138066679,138066678,138066679,50,-,AAGCAAAACATTATTTATGCTGCCAAGCATGAAGGCGACATGAGCCTCCG,"Exon (1110002E22Rik-201/1110002E22Rik, exon 1 of 2)",3,138065052,138081506,16455,1,1110002E22Rik-201,1578,1110002E22Rik-201;1110002E22Rik-202;Gm5105-201,1110002E22Rik;1110002E22Rik;Gm5105,0;-4918;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,7,102634333,ENSMUSG00000090066,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13685,cg09965059,-0.00000113,0.0000047,-0.239701426,0.810720143,loss,ns,0.00000834,0.00000799,1.044331602,0.297145663,pos,ns,0.001567526,0.002340538,0.669728879,0.503529168,pos,ns,0.297975367,-0.0000856,0.0000805,-1.064085556,0.288118084,neg,ns,0.841932921,Pitpnm3,Pitpnm3_Exon,11,72056217,72056266,72056265,72056266,50,-,GAAGTTGTGCTGGGACAGCCACGACACCACCCGCTGCTTCTGCATGTCCG,"Exon (Pitpnm3-202/Pitpnm3, exon 17 of 19)",11,72047528,72135721,88194,2,Pitpnm3-202,79455,Pitpnm3-202;Pitpnm3-201;Pitpnm3-204;Pitpnm3-203,Pitpnm3;Pitpnm3;Pitpnm3;Pitpnm3,0;0;-4168;5295,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,327958,ENSMUSG00000040543,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26336,cg26799063,0.0000115,0.00000633,1.810794551,0.071140613,gain,ns,0.0000112,0.0000107,1.044098856,0.297253149,pos,ns,0.00165615,0.003148102,0.526079116,0.599209386,pos,ns,0.222421393,0.000033,0.000108263,0.30493035,0.760623822,pos,ns,0.878616845,Kiz,Kiz_Intergenic_upstream,2,146824189,146824238,146824189,146824190,50,+,CGCCAATTATGTGTTATCCGATATGTTGCTGGGTATCTTGATCTTTGCCC,Distal Intergenic,2,146855864,146970097,114234,1,Kiz-201,-31626,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,29,228730,ENSMUSG00000074749,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1872,cg16740630,0.0000253,0.0000162,1.562925592,0.119090334,gain,ns,0.0000288,0.0000275,1.044075443,0.297263963,pos,ns,-0.01203724,0.008070825,-1.491450873,0.136860032,neg,ns,0.863723364,0.000497822,0.000277555,1.793597303,0.073852002,pos,ns,0.642504445,Psat1,Psat1_Intron,19,15803328,15803377,15803376,15803377,50,+,CAATTAAAAGCACAATAATTTGCTTGTTATTCAAGTCAGGCATTAGTCCG,"Intron (Gm50348-201/Gm50348-201, intron 1 of 1)",19,15905130,15909712,4583,2,Psat1-204,106335,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,17,107272,ENSMUSG00000024640,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2699,cg17548490,-0.00000614,0.00000155,-3.968617592,0.0000899,loss,ns,0.00000274,0.00000263,1.044054719,0.297273535,pos,ns,0.000155657,0.000770216,0.20209527,0.839974805,pos,ns,0.07573374,-0.0000131,0.0000265,-0.493807313,0.621791952,neg,ns,0.969415171,Kcnq5,Kcnq5_threeUTR,1,21405850,21405899,21405898,21405899,50,-,TCAATGACATCTTTTACATCATATGGACGTAATGTTTCCTTAAACTTCCG,3' UTR,1,21398403,21961581,563179,2,Kcnq5-201,555682,Kcnq5-201;Kcnq5-203;Kcnq5-205;Kcnq5-206;Kcnq5-207,Kcnq5;Kcnq5;Kcnq5;Kcnq5;Kcnq5,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,226922,ENSMUSG00000028033,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1154,cg26777164,-0.0000337,0.00000537,-6.280579572,1.14E-09,loss,yes,-0.00000953,0.00000913,-1.043929827,0.297331226,neg,ns,-0.004510841,0.00267437,-1.686692812,0.092668436,neg,ns,1.033068165,0.0000689,0.000092,0.74952486,0.454109322,pos,ns,0.929165936,Ptprg,Ptprg_Intron,14,11875542,11875591,11875542,11875543,50,-,CGCAGCATTTAGCACTTAAATTGGCTCATTGCAGACAATCCAATTAGAAT,"Intron (Ptprg-201/Ptprg, intron 2 of 29)",14,11553532,12242041,688510,1,Ptprg-201,322010,Ptprg-201;Ptprg-204;Ptprg-205,Ptprg;Ptprg;Ptprg,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,23,19270,ENSMUSG00000021745,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27808,cg19057354,0.0000938,0.0000109,8.640252916,3.03E-16,gain,yes,-0.0000192,0.0000184,-1.043868734,0.297359449,neg,ns,0.005355725,0.005401935,0.991445663,0.322241237,pos,ns,0.491818884,-0.00000852,0.000185772,-0.045853366,0.963456647,neg,ns,0.629127987,Esrrg,Esrrg_Intron,1,187965111,187965160,187965111,187965112,50,+,CGCTAATGACATTAAACAGACGGAGGCCCTTCCAACATGATTGTTCATTT,"Intron (Esrrg-204/Esrrg, intron 3 of 3)",1,187608791,188043502,434712,1,Esrrg-204,356320,Esrrg-204;Esrrg-203,Esrrg;Esrrg,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,60,26381,ENSMUSG00000026610,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17645,cg14403768,0.0000437,0.00000474,9.238285692,4.11E-18,gain,yes,0.0000084,0.00000804,1.043821333,0.297381348,pos,ns,0.007412433,0.002356663,3.145309318,0.001820019,pos,ns,2.739924176,-0.0000759,0.000081,-0.937052247,0.349461122,neg,ns,0.102547522,Zic1,Zic1_Exon,9,91364135,91364184,91364183,91364184,50,-,CGCGGATGTGGTTAACCAGTTTGTATTTGGCTTTGAAGGGCTTGCCCTCG,"Exon (Zic1-201/Zic1, exon 1 of 3)",9,91358058,91365768,7711,2,Zic1-201,1584,Zic1-201;Zic1-202;Zic1-203;Zic4-208;Zic4-206;Zic4-207;Zic4-211;Zic4-204,Zic1;Zic1;Zic1;Zic4;Zic4;Zic4;Zic4;Zic4,0;0;-1081;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,10,22771,ENSMUSG00000032368,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
25995,cg06043205,0.0000118,0.00000559,2.101155837,0.036434375,gain,ns,-0.00000992,0.0000095,-1.043813019,0.297385189,neg,ns,0.010150657,0.002783602,3.646590645,0.000311589,pos,ns,3.506417942,-0.000435115,0.0000957,-4.545333899,0.00000787,neg,ns,0.741809929,Tmem164,Tmem164_Exon,X,142834317,142834366,142834365,142834366,50,+,TTCTCATACATGGCTGGGCCCTTGTGTAAATATCTGCTGGATTTGCTCCG,"Exon (Tmem164-204/Tmem164, exon 6 of 7)",20,142681406,142843494,162089,1,Tmem164-204,152911,Tmem164-204;Tmem164-202;Tmem164-205;Tmem164-201;Tmem164-206;Tmem164-208;Tmem164-209;Tmem164-203,Tmem164;Tmem164;Tmem164;Tmem164;Tmem164;Tmem164;Tmem164;Tmem164,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,15,209497,ENSMUSG00000047045,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23892,cg23442159,0.00000135,0.00000293,0.458958005,0.646585954,gain,ns,-0.0000052,0.00000498,-1.043801428,0.297390544,neg,ns,0.000821097,0.001460301,0.562279219,0.57433214,pos,ns,0.24083688,-0.0000135,0.0000502,-0.268789277,0.788270639,neg,ns,0.771484604,Mical3,Mical3_Intron,6,120937542,120937591,120937542,120937543,50,-,CGAGGTTACGTTACCTTCCTGGACACAGCAAGGGCAGAAGGAGAGAGGTC,"Intron (Mical3-202/Mical3, intron 13 of 15)",6,120931707,121003152,71446,2,Mical3-202,65561,Mical3-202;Mical3-216;Mical3-221;Mical3-222;Mical3-223;Mical3-220;Mical3-206;Mical3-203,Mical3;Mical3;Mical3;Mical3;Mical3;Mical3;Mical3;Mical3,0;0;0;0;0;0;0;-2007,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,5,194401,ENSMUSG00000051586,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
909,cg22338839,0.0000219,0.00000489,4.470790272,0.000011,gain,ns,0.00000867,0.00000831,1.043682426,0.297445528,pos,ns,0.007405994,0.002433514,3.043333818,0.002540011,pos,ns,2.595164336,-0.000188696,0.0000837,-2.254744962,0.024846934,neg,ns,0.018898017,Fam155a,Fam155a_Exon,8,9770943,9770992,9770943,9770944,50,+,CGTTCTCTCGGGGTGCTGCCAACCAGATTTTTAAGCCGTCGTCATACTGC,Promoter (<=1kb),8,9205902,9771161,565260,2,Fam155a-201,169,Fam155a-201;Fam155a-206;Fam155a-203,Fam155a;Fam155a;Fam155a,0;0;-839,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,4,270028,ENSMUSG00000079157,conserved gene and region,8,9770903,9771070,168,*,168,13,0.583333333,0.934531451,0.077380952,8.16E-09,CpGisland,TRUE,U3,Pr-B
27598,cg26282430,-0.0000333,0.0000069,-4.823556036,0.00000222,loss,ns,-0.0000122,0.0000117,-1.04364118,0.297464587,neg,ns,-0.002466131,0.003435543,-0.717828524,0.473403615,neg,ns,0.32476843,-0.0000587,0.000118148,-0.49719363,0.619404952,neg,ns,0.933491332,Usp21,Usp21_Exon,1,171283687,171283736,171283687,171283688,50,-,CGATACCCACAGGCCTGGCACTTGAGACAACTTTTCAACTGGCCCACAAA,"Exon (Usp21-201/Usp21, exon 8 of 13)",1,171281945,171287991,6047,2,Usp21-201,4255,Ppox-207;Ppox-201;Ppox-206;Ppox-208;Ppox-202;Ppox-204;Ppox-205;Ppox-203;Ufc1-201;Ufc1-203;Ufc1-204;Ufc1-202;Usp21-201;Usp21-202;Usp21-208;Usp21-210;Usp21-203;Usp21-207;Usp21-205;Usp21-204;Usp21-209;Usp21-206;Usp21-211;Usp21-212,Ppox;Ppox;Ppox;Ppox;Ppox;Ppox;Ppox;Ppox;Ufc1;Ufc1;Ufc1;Ufc1;Usp21;Usp21;Usp21;Usp21;Usp21;Usp21;Usp21;Usp21;Usp21;Usp21;Usp21;Usp21,-2501;-2501;-2501;-2927;-3860;-3165;-2501;-2568;11288;6704;11205;11251;0;0;-781;0;0;-520;0;0;0;0;0;3070,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,30941,ENSMUSG00000053483,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2990,cg01514664,-0.0000893,0.0000122,-7.32893292,2.03E-12,loss,yes,-0.0000216,0.0000207,-1.043610306,0.297478854,neg,ns,-0.004943033,0.006062022,-0.815409983,0.415463711,neg,ns,0.381466904,0.0000365,0.000208472,0.175119518,0.861100045,pos,ns,0.446499855,Tra2b,Tra2b_Exon,16,22259182,22259231,22259230,22259231,50,-,CACTTATTCCTGAGCTTCAAATACTCATTTATAAAACTTGTCAAATGACG,"Exon (Tra2b-206/Tra2b, exon 2 of 10)",16,22244549,22266005,21457,2,Tra2b-204,6774,Tra2b-204;Tra2b-201;Tra2b-206;Tra2b-202;Tra2b-209;Tra2b-203;Tra2b-207,Tra2b;Tra2b;Tra2b;Tra2b;Tra2b;Tra2b;Tra2b,0;-3935;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,3,20462,ENSMUSG00000022858,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20312,cg15660418,0.000117967,0.0000074,15.93255515,3.62E-42,gain,yes,-0.0000131,0.0000126,-1.043390912,0.297580249,neg,ns,0.012392041,0.003685126,3.362718689,0.000868566,pos,ns,3.061197412,-0.000250153,0.000126731,-1.973885662,0.049282352,neg,ns,0.179325276,Hoxc5,Hoxc5_Intron,15,102996726,102996775,102996726,102996727,50,+,CGCTTCCTTGTCGTAATTTTTAACTACCTGTTATAAAATTTATGGGTGGG,"Intron (Hoxc5-202/Hoxc5, intron 1 of 1)",15,102967443,103015676,48234,1,Hoxc5-202,29283,Hoxc5-202;Hoxc6-202;Hoxc6-203;Hoxc8-201;Hoxc8-202,Hoxc5;Hoxc6;Hoxc6;Hoxc8;Hoxc8,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,46,134,15424,ENSMUSG00000022485,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
15034,cg19117941,-0.00000294,0.00000286,-1.031225989,0.303238722,loss,ns,-0.00000506,0.00000485,-1.043330684,0.297608088,neg,ns,-0.000822977,0.001421228,-0.579060294,0.562969002,neg,ns,0.249515517,0.0000361,0.0000489,0.738956126,0.460492766,pos,ns,0.917123154,Dgkh,Dgkh_threeUTR,14,78575891,78575940,78575939,78575940,50,+,AGATCTCGCCTTTCCAGATGCAAAAGTTCAGCCCCTCTGATGTCATGACG,3' UTR,14,78558750,78732776,174027,2,Dgkh-202,156836,Dgkh-202;Dgkh-201;Dgkh-203;Dgkh-206;Dgkh-204,Dgkh;Dgkh;Dgkh;Dgkh;Dgkh,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,3,380921,ENSMUSG00000034731,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25028,cg24673283,0.0000373,0.00000494,7.537117704,5.33E-13,gain,yes,-0.00000876,0.0000084,-1.043255832,0.297642689,neg,ns,0.007981201,0.002459888,3.244538995,0.001304885,pos,ns,2.884427752,-0.000210845,0.0000846,-2.492390792,0.01321054,neg,ns,0.123799578,Fgfr2,Fgfr2_Intron,7,131644243,131644292,131644243,131644244,50,-,CGGAATGGATGGCCACACTTGGTTGTAATCAGTGGGCTCTCGAGAGCCAG,"Intron (Fgfr2-217/Fgfr2, intron 2 of 6)",7,130162451,133123350,2960900,2,Fgfr2-217,1479058,Fgfr2-217,Fgfr2,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,58,79,14183,ENSMUSG00000030849,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
10866,cg26931366,0.0000059,0.00000624,0.946109782,0.344829458,gain,ns,0.0000111,0.0000106,1.043244739,0.297647817,pos,ns,-0.00197434,0.003103735,-0.636117503,0.525169198,neg,ns,0.279700754,-0.00000192,0.000106737,-0.018031276,0.985625502,neg,ns,0.599609843,Neurod6,Neurod6_Exon,6,55679098,55679147,55679098,55679099,50,+,CGTTGAGCTGCAAGCAGCCTGCCACCAAGTTTGTAGTTGGCTGGGAAAGA,"Exon (Neurod6-201/Neurod6, exon 2 of 2)",6,55677822,55681263,3442,2,Neurod6-201,2116,Neurod6-201,Neurod6,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,16,11922,ENSMUSG00000037984,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22423,cg17757479,0.00000486,0.00000278,1.743650744,0.08221133,gain,ns,0.00000494,0.00000473,1.043196765,0.297669996,pos,ns,0.003846271,0.001386066,2.774954617,0.005856104,pos,ns,2.232391249,-0.000107091,0.0000477,-2.246672719,0.025364492,neg,ns,0.067962509,Fst,Fst_Promoter,13,114460339,114460388,114460387,114460388,50,+,AGACGGGCCCAAGCCCCCCTTTGAAAGTGGGCATGAATCACAAAGCCCCG,Promoter (1-2kb),13,114452290,114458951,6662,2,Fst-202,-1388,Fst-202;Fst-201;Fst-206;Fst-205,Fst;Fst;Fst;Fst,0;0;-4103;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,4,7,14313,ENSMUSG00000021765,conserved gene and region,13,114460387,114460547,161,*,161,19,0.633540373,1.192592593,0.118012422,2.97E-16,CpGisland,TRUE,U3,Pr-B
12696,cg24778866,-0.00000999,0.0000054,-1.849860853,0.065285164,loss,ns,0.00000957,0.00000918,1.043016983,0.297753118,pos,ns,0.001588139,0.002689137,0.590575877,0.555234922,pos,ns,0.255523226,-0.000222822,0.0000925,-2.40942753,0.016560176,neg,ns,0.874815457,Gm6555,Gm6555_Intergenic_upstream,3,66746603,66746652,66746603,66746604,50,-,CGAACCTGTTGAGAGTATTCAGATTTCCATAGCAGGACGCACTTAAAATG,Distal Intergenic,3,66882350,66883138,789,1,Gm6555-201,-135747,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,10,625115,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21527,cg26236730,-0.00000231,0.00000321,-0.718683862,0.47287707,loss,ns,0.00000569,0.00000546,1.042858903,0.297826219,pos,ns,0.002639525,0.001598433,1.651320357,0.099685777,pos,ns,1.0013668,-0.0000653,0.000055,-1.187414382,0.235973254,neg,ns,0.85081857,Bsn,Bsn_Exon,9,108107951,108108000,108107951,108107952,50,+,CGCAGTTTGGTGGACTCATGCTCCACCAGCCGCAGGTCCCGGTCCAGCTC,"Exon (Bsn-201/Bsn, exon 6 of 12)",9,108096022,108190384,94363,2,Bsn-201,82384,Bsn-201;Bsn-202,Bsn;Bsn,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,8,12217,ENSMUSG00000032589,conserved gene and region,9,108107742,108108054,313,*,313,19,0.638977636,0.596190476,0.060702875,8.61E-11,CpGisland,TRUE,U11,Tr-P
22129,cg17636812,0.00000388,0.00000116,3.332159602,0.000966045,gain,ns,0.00000206,0.00000198,1.042714277,0.297893109,pos,ns,0.000583417,0.000579158,1.007353099,0.314550753,pos,ns,0.502309271,0.00000469,0.0000199,0.235410085,0.814045895,pos,ns,0.971901425,Traf3,Traf3_Exon,12,111251136,111251185,111251184,111251185,50,-,GCACACTTGTCAGAGTGTGTCAATGCCCCCAGCACCTGTAGTTTTAAGCG,"Exon (Traf3-201/Traf3, exon 8 of 12)",12,111166370,111267153,100784,1,Traf3-203,84766,Traf3-203;Traf3-201;Traf3-202;Traf3-205,Traf3;Traf3;Traf3;Traf3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,22031,ENSMUSG00000021277,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4856,cg10316830,-0.0000183,0.00000769,-2.375936529,0.018111938,loss,ns,0.0000136,0.0000131,1.042713429,0.297893502,pos,ns,-0.000993539,0.003829242,-0.259461058,0.795451744,neg,ns,0.099386162,0.000131538,0.000131687,0.998862646,0.318640267,pos,ns,0.646573875,Zbtb44,Zbtb44_Exon,9,31066713,31066762,31066713,31066714,50,+,CGCTAAAGATGCATCGCCTAAAGCATGAAGGTAAACGCTGTTTCCGGTGC,"Exon (Zbtb44-205/Zbtb44, exon 5 of 6)",9,31030644,31070233,39590,1,Zbtb44-205,36069,Zbtb44-205;Zbtb44-201;Zbtb44-206;Zbtb44-202;Zbtb44-204,Zbtb44;Zbtb44;Zbtb44;Zbtb44;Zbtb44,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,15,235132,ENSMUSG00000047412,conserved gene and region,9,31066713,31066901,189,*,189,12,0.486772487,1.07641196,0.063492064,0.00000032,CpGisland,TRUE,U10,Tr-S
130,cg01494784,-0.00000595,0.00000252,-2.357714294,0.019008873,loss,ns,-0.00000447,0.00000429,-1.042642163,0.297926466,neg,ns,-0.002944975,0.001255786,-2.345125102,0.019651114,neg,ns,1.70661283,0.0000976,0.0000432,2.260480568,0.024484798,pos,ns,0.945271243,Kdm2a,Kdm2a_Exon,19,4324437,4324486,4324437,4324438,50,+,CGTCTCCATCCTGAGCCCAACTGCCCCGGCCATTCAGCCTGGCTGCACCC,"Exon (Kdm2a-201/Kdm2a, exon 17 of 21)",19,4314419,4398285,83867,2,Kdm2a-201,73799,Kdm2a-201;Kdm2a-202;Kdm2a-213;Kdm2a-211;Kdm2a-207;Kdm2a-214;Kdm2a-212;Kdm2a-210,Kdm2a;Kdm2a;Kdm2a;Kdm2a;Kdm2a;Kdm2a;Kdm2a;Kdm2a,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,21,30,225876,ENSMUSG00000054611,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7279,cg13357278,-0.0000105,0.00000794,-1.322922595,0.186836126,loss,ns,-0.0000141,0.0000135,-1.042610336,0.297941189,neg,ns,-0.004915044,0.003950859,-1.244044434,0.214423042,neg,ns,0.668728546,-0.0000792,0.00013587,-0.58297034,0.560337094,neg,ns,0.83282624,Gm5267,Gm5267_Intergenic_upstream,1,41981730,41981779,41981730,41981731,50,+,CGGATAAAGTTGCCTAGAGAGCTGAGGATGATTTCATATTCAGCGGTTTT,Distal Intergenic,1,42103289,42104333,1045,1,Gm5267-201,-121510,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,15,383634,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22343,cg19525891,0.00000154,0.00000363,0.423779859,0.672020261,gain,ns,-0.00000643,0.00000617,-1.042487773,0.297997889,neg,ns,-0.001022809,0.001806209,-0.566273973,0.571617259,neg,ns,0.242894667,-0.0000236,0.0000621,-0.3799474,0.704244632,neg,ns,0.826146562,Brpf1,Brpf1_Exon,6,113319725,113319774,113319773,113319774,50,+,TTCTGTTCTCCAAAAAGAACCCGAAGACAGCTGGACCGCCCAAGAGGCCG,"Exon (Brpf1-204/Brpf1, exon 9 of 14)",6,113307137,113324857,17721,1,Brpf1-204,12588,Brpf1-204;Brpf1-209;Brpf1-203;Brpf1-202;Brpf1-201;Brpf1-210;Brpf1-208;Brpf1-205;Brpf1-207;Brpf1-206,Brpf1;Brpf1;Brpf1;Brpf1;Brpf1;Brpf1;Brpf1;Brpf1;Brpf1;Brpf1,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,16,78783,ENSMUSG00000001632,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14651,cg04375918,-0.00000264,0.00000152,-1.74011854,0.082830578,loss,ns,0.00000268,0.00000257,1.042456032,0.298012574,pos,ns,0.00027631,0.000754174,0.366374209,0.714335782,pos,ns,0.146097595,-0.0000161,0.0000259,-0.620879576,0.535135083,neg,ns,0.961768754,Rbfox2,Rbfox2_Intron,15,77094527,77094576,77094575,77094576,50,-,AAAGAACAGAAACACATTCCGGTTATTGAGGACGGCAGCATGCACATGCG,"Intron (1700109K24Rik-201/1700109K24Rik-201, intron 2 of 2)",15,77078990,77306928,227939,2,Rbfox2-204,212352,Rbfox2-204;Rbfox2-203;Rbfox2-202;Rbfox2-206;Rbfox2-208;Rbfox2-209;Rbfox2-201;Rbfox2-215;Rbfox2-207;Rbfox2-212;Rbfox2-213,Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,20,93686,ENSMUSG00000033565,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10387,cg15107372,-0.00000193,0.00000138,-1.397989476,0.16311568,loss,ns,0.00000244,0.00000234,1.042435263,0.298022183,pos,ns,0.000203084,0.000685446,0.2962807,0.767214111,pos,ns,0.115083418,-0.0000116,0.0000236,-0.493279676,0.622164242,neg,ns,0.965345064,Snx24,Snx24_Intron,18,53312919,53312968,53312919,53312920,50,+,CGAAAATTAGAAAGGCAGAGACTAATGGAAAACTAGATTTTTCACTGAAT,"Intron (Snx24-202/Snx24, intron 1 of 6)",18,53245662,53390920,145259,1,Snx24-202,67257,Snx24-202;Snx24-204;Snx24-203;Snx24-201,Snx24;Snx24;Snx24;Snx24,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,7,69226,ENSMUSG00000024535,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25009,cg23087335,-0.00000734,0.00000367,-2.000017532,0.046370501,loss,ns,-0.0000065,0.00000623,-1.04214713,0.298155515,neg,ns,-0.001166297,0.001826144,-0.638666463,0.523511497,neg,ns,0.281073776,-0.000039,0.0000628,-0.621141058,0.534963264,neg,ns,0.929654777,Fgfr2,Fgfr2_Intron,7,131497641,131497690,131497689,131497690,50,+,CAGAAAGCGAAGCTGTTATGACACTAGAAATTGCTTTATTGATAGCCTCG,"Intron (Fgfr2-217/Fgfr2, intron 2 of 6)",7,130162451,133123350,2960900,2,Fgfr2-217,1625660,Fgfr2-217;Gm45105-201,Fgfr2;Gm45105,0;-3738,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,58,79,14183,ENSMUSG00000030849,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2367,cg17507887,0.0000602,0.00000488,12.35167996,8.98E-29,gain,yes,-0.00000863,0.00000828,-1.041708554,0.298358539,neg,ns,0.01109521,0.002426834,4.57188682,0.00000699,pos,ns,5.155349193,-0.000212971,0.0000835,-2.551810982,0.011196102,neg,ns,0.103261827,Tfap2b,Tfap2b_fiveUTR,1,19209074,19209123,19209074,19209075,50,+,CGTCGGATTTGGTGTGTATCCCCCATTTCCAATTATAGATGGATCATTAC,Promoter (<=1kb),1,19208914,19238576,29663,1,Tfap2b-201,160,Tfap2b-201;Tfap2b-204;Tfap2b-202;Tfap2b-205;Tfap2b-203,Tfap2b;Tfap2b;Tfap2b;Tfap2b;Tfap2b,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,40,21419,ENSMUSG00000025927,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
10625,cg17185663,-0.00000611,0.00000185,-3.296977542,0.001090842,loss,ns,0.00000328,0.00000315,1.041684479,0.298369687,pos,ns,0.001735859,0.000921732,1.883258375,0.060601391,pos,ns,1.217517409,-0.0000292,0.0000317,-0.921730406,0.357385988,neg,ns,0.044423898,Rnf44,Rnf44_Exon,13,54687213,54687262,54687261,54687262,50,+,CCGGACCATGTGCTCGGCGTGAGACAAAAGCAACAACAAAGGAAGTGGCG,Promoter (<=1kb),13,54684030,54687253,3224,2,Rnf44-203,0,Rnf44-218;Rnf44-204;Rnf44-201;Rnf44-211;Rnf44-217;Rnf44-208;Rnf44-213;Rnf44-206;Rnf44-209;Rnf44-207;Rnf44-205;Rnf44-202;Rnf44-210;Rnf44-214;Rnf44-215;Rnf44-203;Rnf44-212;Rnf44-216,Rnf44;Rnf44;Rnf44;Rnf44;Rnf44;Rnf44;Rnf44;Rnf44;Rnf44;Rnf44;Rnf44;Rnf44;Rnf44;Rnf44;Rnf44;Rnf44;Rnf44;Rnf44,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,3,105239,ENSMUSG00000034928,conserved gene but different region,13,54687075,54688213,1139,*,1139,123,0.675153644,0.948793834,0.107989464,1.50E-97,CpGisland,TRUE,U1,Pr-A
10191,cg12755350,0.0000418,0.00000676,6.189285174,1.91E-09,gain,yes,0.000012,0.0000115,1.041645976,0.298387515,pos,ns,0.013258961,0.003364288,3.941089604,0.000100288,pos,ns,3.99875173,-0.0000152,0.000115698,-0.131539188,0.895434116,neg,ns,0.193569577,Hoxa9,Hoxa9_threeUTR,6,52224245,52224294,52224293,52224294,50,+,CACTCGTCTTTTGCTCGGTCTTTGTTGATTTTCTTCATTTTCATCCTGCG,3' UTR,6,52223100,52227370,4271,2,Hoxa9-201,3076,Hoxa7-205;Hoxa7-204;Hoxa9-201;Hoxa9-203;Hoxa9-202;Hoxa9-204;Hoxa9-205,Hoxa7;Hoxa7;Hoxa9;Hoxa9;Hoxa9;Hoxa9;Hoxa9,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,14,15405,ENSMUSG00000038227,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18906,cg16624060,-0.0000118,0.0000093,-1.263689512,0.207290952,loss,ns,0.0000165,0.0000158,1.041628658,0.298395535,pos,ns,-0.000749286,0.004629807,-0.161839538,0.871537647,neg,ns,0.059713848,-0.0000779,0.000159219,-0.489445055,0.624872787,neg,ns,0.815228227,Dach1,Dach1_Intron,14,97868485,97868534,97868533,97868534,50,-,AAAGTGACACCCTCATTTTTTTCTTGTAGGATATCATTAAATTTCAATCG,"Intron (Dach1-201/Dach1, intron 6 of 10)",14,97786853,98169543,382691,2,Dach1-201,301009,Dach1-201;Dach1-202;Dach1-203,Dach1;Dach1;Dach1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,76,13134,ENSMUSG00000055639,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8160,cg14242895,0.0000245,0.0000117,2.103666582,0.036212924,gain,ns,-0.0000206,0.0000198,-1.04161886,0.298400072,neg,ns,0.037374332,0.005800356,6.443455044,4.46E-10,pos,ns,9.350906281,-0.00081064,0.000199474,-4.063890685,0.0000612,neg,ns,0.430524052,Kmt2a,Kmt2a_threeUTR,9,44807327,44807376,44807375,44807376,50,-,CAATGTTTGGTAATTAATTGGCACAACCCCATGACAGCCTTTTGACACCG,3' UTR,9,44803355,44881296,77942,2,Kmt2a-201,73920,Kmt2a-201;Kmt2a-202;Ttc36-201,Kmt2a;Kmt2a;Ttc36,0;0;-4255,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,10,214162,ENSMUSG00000002028,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2423,cg01608986,0.0000432,0.00000892,4.839397799,0.00000206,gain,ns,0.0000158,0.0000152,1.041472169,0.298468005,pos,ns,0.012676982,0.004439767,2.855326007,0.004589266,pos,ns,2.338256795,-0.000253249,0.000152683,-1.658653819,0.098196965,neg,ns,0.159884578,Olig3,Olig3_Promoter,10,19356226,19356275,19356274,19356275,50,-,CAATGAATATGAATAGGAATCCTTGCTAAATGGGACAGCAAAGCGCACCG,Promoter (<=1kb),10,19356533,19358604,2072,1,Olig3-201,-307,Olig3-201,Olig3,-258,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,9,94222,ENSMUSG00000045591,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
13721,cg21128107,-0.0000089,0.0000271,-0.328228997,0.742960112,loss,ns,-0.0000479,0.000046,-1.041074563,0.29865219,neg,ns,0.020640619,0.013489154,1.530164098,0.126995881,pos,ns,0.896210364,-0.001252008,0.000463891,-2.698928702,0.007337751,neg,ns,0.171697934,Atoh8,Atoh8_Promoter,6,72244478,72244527,72244478,72244479,50,-,CGCCTGACGCCAGCCTCCGAACTCGCCCCCAGAGCAAACATTTCCAGTTG,Promoter (8-9kb),6,72206177,72235577,29401,2,Atoh8-201,-8950,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,7,71093,ENSMUSG00000037621,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
3919,cg11105656,0.00000662,0.0000016,4.131435677,0.0000464,gain,ns,0.00000283,0.00000272,1.040985124,0.298693631,pos,ns,0.000500259,0.000797754,0.627083661,0.531065961,pos,ns,0.274851534,0.0000144,0.0000274,0.523370066,0.60109066,pos,ns,0.011027192,Celf4,Celf4_Exon,18,25753549,25753598,25753597,25753598,50,+,GGCTGCTGCCGAGCCCGTTGGTACTGAGGCTTGCGTTGTCAGCCTGTCCG,Promoter (<=1kb),18,25477632,25753983,276352,2,Celf4-202,385,Celf4-202;Celf4-201;Celf4-203;Celf4-207;Celf4-206;Celf4-209;Celf4-205,Celf4;Celf4;Celf4;Celf4;Celf4;Celf4;Celf4,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,31,59,108013,ENSMUSG00000024268,conserved gene and region,18,25753376,25753608,233,*,233,18,0.592274678,0.882575758,0.077253219,5.03E-12,CpGisland,TRUE,U3,Pr-B
13968,cg09939922,-0.0000138,0.0000039,-3.539921034,0.000461616,loss,ns,0.0000069,0.00000663,1.040982397,0.298694895,pos,ns,-0.002441545,0.001942329,-1.25701927,0.209692913,neg,ns,0.678416248,-0.000038,0.0000668,-0.569236932,0.569607567,neg,ns,0.605436222,Arhgap4,Arhgap4_Exon,X,73919760,73919809,73919808,73919809,50,-,CTGACATGCAGGGAGACATATTTGGCATTGAAGTTCTCTATCATGGCTCG,"Exon (Arhgap4-209/Arhgap4, exon 5 of 15)",20,73899313,73921870,22558,2,Arhgap4-209,2061,Arhgap4-209;Naa10-208;Naa10-201;Naa10-204;Naa10-203;Naa10-206;Naa10-205;Naa10-209;Naa10-202;Naa10-207;Naa10-210;Naa10-211;Naa10-212;Renbp-201;Renbp-202;Renbp-203;Renbp-204;Renbp-209,Arhgap4;Naa10;Naa10;Naa10;Naa10;Naa10;Naa10;Naa10;Naa10;Naa10;Naa10;Naa10;Naa10;Renbp;Renbp;Renbp;Renbp;Renbp,0;0;0;0;0;0;0;0;0;0;0;2046;2043;10983;11041;6592;11008;10947,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,171207,ENSMUSG00000031389,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
117,cg11560663,0.00000122,0.00000199,0.614530994,0.539315265,gain,ns,0.00000352,0.00000338,1.040946133,0.298711699,pos,ns,0.002355427,0.000989824,2.379641634,0.017934191,pos,ns,1.746318217,-0.0000918,0.000034,-2.69543156,0.007413403,neg,ns,0.951349366,Elavl1,Elavl1_threeUTR,8,4289426,4289475,4289474,4289475,50,+,ACCTTCTCACTTCTCATTCAGACAAAGACAAACACTTGTGAAAATTGGCG,3' UTR,8,4285382,4325413,40032,2,Elavl1-201,35938,Elavl1-201;Elavl1-204,Elavl1;Elavl1,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,5,15568,ENSMUSG00000040028,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27470,cg10213224,-0.00000274,0.00000192,-1.424976668,0.155169933,loss,ns,-0.0000034,0.00000326,-1.040840422,0.298760687,neg,ns,-0.000241739,0.000955919,-0.25288601,0.800523908,neg,ns,0.096625693,-0.0000416,0.0000329,-1.266057475,0.20644309,neg,ns,0.966994062,Pbx1,Pbx1_Intron,1,168327974,168328023,168327974,168327975,50,-,CGCAGATTCCGCAAATCTCTCTTAATATGCAAATGCGGCCCATTCAAGGA,"Intron (Pbx1-208/Pbx1, intron 2 of 7)",1,168119364,168432270,312907,2,Pbx1-208,104247,Pbx1-208;Pbx1-205;Pbx1-206;Pbx1-201;Pbx1-202;Pbx1-204,Pbx1;Pbx1;Pbx1;Pbx1;Pbx1;Pbx1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,84,18514,ENSMUSG00000052534,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10422,cg20951825,0.0000652,0.0000725,0.899298543,0.369191668,gain,ns,0.000128106,0.000123092,1.040734663,0.298809703,pos,ns,0.087451194,0.036061862,2.425032698,0.015878086,pos,ns,1.799201861,-0.003198768,0.001240164,-2.579309688,0.010360323,neg,ns,0.726402952,Prdm6,Prdm6_Intron,18,53499374,53499423,53499422,53499423,50,-,CTTTGGATCCCATTGTTTTAATATGACAAATGGCCATGCATCAAGCTGCG,"Intron (Prdm6-201/Prdm6, intron 2 of 6)",18,53464516,53575857,111342,1,Prdm6-201,34858,Prdm6-201;Prdm6-203,Prdm6;Prdm6,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,16,225518,ENSMUSG00000069378,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2168,cg05609811,-0.0000022,0.00000107,-2.045467641,0.041652607,loss,ns,0.0000019,0.00000183,1.04068674,0.298831916,pos,ns,0.000523948,0.000534887,0.979547295,0.328073452,pos,ns,0.484028912,0.000000383,0.0000184,0.020832193,0.983392919,pos,ns,0.974702684,Cyp7b1,Cyp7b1_Intron,3,18165307,18165356,18165355,18165356,50,-,CATTGGCGCAGAGAGTAATTACCTATCTGTCAGCGTTGCTGGTGTGTGCG,"Intron (Cyp7b1-201/Cyp7b1, intron 1 of 5)",3,18071950,18243338,171389,2,Cyp7b1-201,77982,Cyp7b1-201,Cyp7b1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,17,13123,ENSMUSG00000039519,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7980,cg21948411,0.00000847,0.00000213,3.974110309,0.0000879,gain,ns,-0.00000377,0.00000362,-1.040632114,0.298857237,neg,ns,0.003158178,0.001060568,2.977816651,0.00313209,pos,ns,2.504165801,-0.0000813,0.0000365,-2.229258676,0.026513023,neg,ns,0.05561135,Pax2,Pax2_Intergenic_upstream,19,44672232,44672281,44672280,44672281,50,-,TGTATTGATTTAATCATCTGCAGAAATACACATTCTGGATTACTGTAGCG,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-83813,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,19,44672280,44672396,117,*,117,16,0.837606838,0.806896552,0.136752137,7.42E-15,CpGisland,TRUE,U13,Hc-P
2929,cg23871793,0.0000139,0.00000642,2.167223044,0.030978992,gain,ns,-0.0000114,0.0000109,-1.040591531,0.298876049,neg,ns,-0.002385464,0.003195745,-0.746450211,0.455961201,neg,ns,0.341072111,-0.00000976,0.000109901,-0.088831915,0.929272853,neg,ns,0.818922774,Gm11880,Gm11880_Intergenic_downstream,4,22067530,22067579,22067530,22067531,50,+,CGCTGCTCCACAAAGAGGGGTAAACAGAGAAAGGGAAATTAAAAAGGGAA,Distal Intergenic,4,22117134,22117532,399,2,Gm11880-201,49953,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,11,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2667,cg02865831,-0.000015,0.00000357,-4.199109832,0.0000351,loss,ns,0.00000631,0.00000607,1.040581524,0.298880688,pos,ns,0.00133703,0.00177785,0.752048509,0.452592503,pos,ns,0.344292644,-0.0000294,0.0000611,-0.48130155,0.630641748,neg,ns,0.944087752,Myb,Myb_Exon,10,21146212,21146261,21146260,21146261,50,-,CAAATTCTAAGAGGTTCTTAACATTATCCAGAATGGTGCCCTGGTGGACG,"Exon (Gm26577-201/Gm26577-201, exon 2 of 3)",10,21124935,21160905,35971,2,Myb-203,14644,Myb-203;Myb-201;Myb-202;Myb-206;Myb-205,Myb;Myb;Myb;Myb;Myb,0;0;0;0;2886,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,17863,ENSMUSG00000019982,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13707,cg10975089,-0.0000237,0.00000342,-6.934152234,2.38E-11,loss,yes,0.00000605,0.00000581,1.040452435,0.298940533,pos,ns,-0.003832396,0.001702939,-2.250460374,0.025120487,neg,ns,1.59997194,0.00011552,0.0000586,1.972546317,0.049435657,pos,ns,0.939753169,Tle1,Tle1_Intron,4,72195725,72195774,72195773,72195774,50,+,GGCGGCAAAAAGCATCAATTTGAGCTTGGCTACACCCTGGGGGCCAGACG,"Intron (Tle1-203/Tle1, intron 4 of 19)",4,72117142,72200919,83778,2,Tle1-203,5145,Tle1-203;Tle1-202;Tle1-204;Tle1-207;Tle1-201;Tle1-205;Tle1-209;Tle1-208,Tle1;Tle1;Tle1;Tle1;Tle1;Tle1;Tle1;Tle1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,20,21885,ENSMUSG00000008305,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
10274,cg00703091,0.0000329,0.00000693,4.747118101,0.00000316,gain,ns,0.0000123,0.0000118,1.040450596,0.298941386,pos,ns,0.006325413,0.003450939,1.832954028,0.067768302,pos,ns,1.168973397,-0.000121137,0.000118678,-1.020726404,0.308179987,neg,ns,0.108472077,Evx1,Evx1_Intergenic_downstream,6,52323422,52323471,52323422,52323423,50,+,CGTTAATAATGGCTGTTTGTTAACAAGGATGCGGAGGTTAAATAATCCGG,Distal Intergenic,6,52313552,52316644,3093,1,Evx1-202,9870,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,19,14028,ENSMUSG00000005503,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
9801,cg02286746,0.000108972,0.0000108,10.05020822,9.35E-21,gain,yes,0.0000192,0.0000184,1.04025857,0.299030424,pos,ns,0.011294261,0.005396569,2.092859519,0.037174385,pos,ns,1.429756204,0.000245219,0.000185588,1.321313507,0.187371235,pos,ns,0.263853619,Sim1,Sim1_Intron,10,50897512,50897561,50897560,50897561,50,-,TTTATACTGTCAGCGCCTACTTTATAAAAATAAAGCTATTGCGAACTCCG,"Intron (Sim1-202/Sim1, intron 2 of 2)",10,50894754,50899998,5245,1,Sim1-202,2758,Sim1-202;Sim1-201,Sim1;Sim1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,8,20464,ENSMUSG00000019913,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
12257,cg05789487,0.00000772,0.000000936,8.246324893,4.70E-15,gain,yes,-0.00000165,0.00000159,-1.040213056,0.29905153,neg,ns,0.0000518,0.00046597,0.111194382,0.911534164,pos,ns,0.04022705,0.00000169,0.000016,0.105497323,0.916049424,pos,ns,0.012980764,Ptch1,Ptch1_fiveUTR,13,63573458,63573507,63573506,63573507,50,+,CTCGGCGTGGGTGGTCTGCCGCGCCATAGGCAGGACCTGTCAGGGTCACG,Promoter (<=1kb),13,63508329,63573460,65132,2,Ptch1-204,0,Ptch1-204;Ptch1-205,Ptch1;Ptch1,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,9,36,19206,ENSMUSG00000021466,conserved gene and region,13,63573460,63573518,59,*,59,7,0.694915254,1.012254902,0.118644068,0.00000415,CpGisland,TRUE,U3,Pr-B
7258,cg03183633,-0.0000229,0.00000939,-2.4352178,0.015446404,loss,ns,0.0000166,0.000016,1.040195711,0.299059574,pos,ns,-0.006465454,0.004673507,-1.383426541,0.167529542,neg,ns,0.775908599,0.0000287,0.000160722,0.178432079,0.858500207,pos,ns,0.803305469,Gm5267,Gm5267_Intron,1,41812359,41812408,41812359,41812360,50,-,CGCCTTGGGGTAATGACTAATGTCAATGGCAAATTTCACAGTTGTCTAGA,"Intron (Gm29260-201/Gm29260-201, intron 1 of 5)",1,42103289,42104333,1045,1,Gm5267-201,-290930,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,15,383634,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26816,cg20396152,-0.00000143,0.00000167,-0.856268888,0.392510449,loss,ns,0.00000295,0.00000284,1.040056554,0.299124113,pos,ns,0.001471335,0.000830671,1.77126011,0.077499935,pos,ns,1.11069866,-0.0000101,0.0000286,-0.353285935,0.724114209,neg,ns,0.063391215,H13,H13_Exon,2,152669679,152669728,152669679,152669680,50,+,CGCTGGCCTACGGCAGCCTCCTGCTCATGGCGCTGCTGCCCATCTTCTTC,Promoter (<=1kb),2,152669461,152708670,39210,1,H13-204,218,H13-204;H13-206;H13-203;H13-202;H13-201,H13;H13;H13;H13;H13,0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,4,14950,ENSMUSG00000019188,conserved gene and region,2,152669348,152669868,521,*,521,61,0.694817658,0.98332302,0.117082534,4.34E-51,CpGisland,TRUE,U1,Pr-A
25889,cg03541332,-0.0000158,0.00000496,-3.192621869,0.001554619,loss,ns,0.00000877,0.00000843,1.039989119,0.299155392,pos,ns,-0.003317053,0.002469895,-1.342993489,0.180256511,neg,ns,0.744109038,0.0000317,0.0000849,0.373289705,0.709187969,pos,ns,0.890705343,Frmpd3,Frmpd3_Exon,X,140404568,140404617,140404616,140404617,50,-,AGCAAGATCAGCAAGATCCAGCTGTTCCGGGAGAACCAGGGCGTGGCCCG,"Exon (Frmpd3-203/Frmpd3, exon 12 of 15)",20,140342263,140435467,93205,1,Frmpd3-203,62305,Frmpd3-203,Frmpd3,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,10,245643,ENSMUSG00000042425,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27250,cg23833552,0.0000655,0.0000107,6.116231637,2.88E-09,gain,yes,0.0000189,0.0000182,1.039889422,0.29920164,pos,ns,-0.010000562,0.005330257,-1.876187818,0.061568922,neg,ns,1.210638448,0.000123662,0.000183307,0.674614088,0.500423767,pos,ns,0.46375856,Nhs,Nhs_Intron,X,161973835,161973884,161973835,161973836,50,-,CGAAACCCAGAGGAAGTTCAACAGTGTCAGGATGCAATTACTCAGGAAGG,"Intron (Nhs-202/Nhs, intron 1 of 8)",20,161833296,162159730,326435,2,Nhs-202,185846,Nhs-202;Nhs-201,Nhs;Nhs,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,12,195727,ENSMUSG00000059493,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8256,cg16540281,-0.0000402,0.00000476,-8.43011741,1.32E-15,loss,yes,-0.00000842,0.00000809,-1.039819703,0.299233983,neg,ns,-0.002280446,0.002370985,-0.961813769,0.336892776,neg,ns,0.472508302,-0.0000866,0.0000815,-1.061566004,0.289259069,neg,ns,0.803307722,Zcchc7,Zcchc7_Intron,4,44905597,44905646,44905597,44905598,50,+,CGTAATTGTAGTTGTCGTGTCAGAGCCTAACTGACTTGGAGCTGAAGGAT,"Intron (Zcchc7-203/Zcchc7, intron 5 of 8)",4,44756568,44932203,175636,1,Zcchc7-203,149029,Zcchc7-203;Zcchc7-207;Zcchc7-205;Zcchc7-201;Zcchc7-202,Zcchc7;Zcchc7;Zcchc7;Zcchc7;Zcchc7,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,27,27,319885,ENSMUSG00000035649,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2129,cg20993392,0.0000123,0.00000269,4.577582985,0.00000682,gain,ns,-0.00000475,0.00000457,-1.039813957,0.299236649,neg,ns,0.001009427,0.001339287,0.753704871,0.451598526,pos,ns,0.345247484,-0.0000898,0.0000461,-1.949337429,0.052156704,neg,ns,0.065580472,Bhlhe22,Bhlhe22_fiveUTR,3,18054314,18054363,18054362,18054363,50,+,TTAATTAAAACGTTAACCTGATTGGGTAGAAAGCGCTGTCCCAACAGGCG,Promoter (<=1kb),3,18054174,18057517,3344,1,Bhlhe22-201,140,Bhlhe22-201,Bhlhe22,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,9,22,59058,ENSMUSG00000025128,mapped to different genes,3,18054268,18054363,96,*,96,8,0.458333333,1.590062112,0.083333333,0.00000859,CpGisland,TRUE,U3,Pr-B
12068,cg20658837,0.00000268,0.00000387,0.692260822,0.489291747,gain,ns,0.00000684,0.00000658,1.039687418,0.299295359,pos,ns,0.004582224,0.001926464,2.378566924,0.01798559,pos,ns,1.745075317,-0.000199495,0.0000663,-3.011199015,0.002816209,neg,ns,0.92763041,Ints6,Ints6_Exon,14,62716391,62716440,62716391,62716392,50,-,CGCAACACTAATGCAAAGAGTCTCTGATCCCAACGAAAAGGTTCCTTGGT,"Exon (Ints6-201/Ints6, exon 5 of 19)",14,62676330,62761112,84783,2,Ints6-201,44672,Ints6-201;Ints6-202;Ints6-206,Ints6;Ints6;Ints6,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,6,18130,ENSMUSG00000035161,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
767,cg12156951,0.00000255,0.00000455,0.560775956,0.575355361,gain,ns,0.00000803,0.00000772,1.039632859,0.299320675,pos,ns,0.003250522,0.002262179,1.436898482,0.151755329,pos,ns,0.818856051,-0.0000928,0.0000778,-1.192682812,0.233905711,neg,ns,0.907461257,Slc1a3,Slc1a3_threeUTR,15,8687739,8687788,8687739,8687740,50,+,CGCTCAAGTCCTGGTGGTTCTGAGAACAAGCATTCTTGCATCAATAGCTA,3' UTR,15,8634124,8710764,76641,2,Slc1a3-201,22976,Slc1a3-201;Slc1a3-207;Slc1a3-208;Slc1a3-205,Slc1a3;Slc1a3;Slc1a3;Slc1a3,0;0;0;22708,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,2,20512,ENSMUSG00000005360,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27360,cg06105149,0.0000841,0.00000955,8.811996422,8.96E-17,gain,yes,-0.0000169,0.0000162,-1.03960183,0.299335074,neg,ns,0.010851201,0.0047519,2.283549721,0.023074278,pos,ns,1.636871883,-0.000227994,0.000163417,-1.395165136,0.163964746,neg,ns,0.255121025,Cdh22,Cdh22_Intergenic_upstream,2,165254760,165254809,165254808,165254809,50,+,CTCGCTGGCAGTAAATTACCTGCTTTGCATTTTGCAGCAACAACTTAACG,Distal Intergenic,2,165111507,165234853,123347,2,Cdh22-201,-19907,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,23,104010,ENSMUSG00000053166,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6869,cg16339297,-0.00000165,0.00000223,-0.73976383,0.460003146,loss,ns,0.00000394,0.00000379,1.039588075,0.299341457,pos,ns,0.001958183,0.001109173,1.765444234,0.078473566,pos,ns,1.105276612,-0.000081,0.0000381,-2.124067199,0.034455932,neg,ns,0.952527531,Golga1,Golga1_Exon,2,39052964,39053013,39053012,39053013,50,+,TGTTTTTCTAATGCAATTTCAAGCTTCTCTTTTATCTTCTGCAAGTTTCG,Promoter (<=1kb),2,39016503,39053008,36506,2,Golga1-208,0,Golga1-201;Golga1-202;Golga1-208;Golga1-210;Golga1-204;Golga1-206;Golga1-205,Golga1;Golga1;Golga1;Golga1;Golga1;Golga1;Golga1,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,76899,ENSMUSG00000026754,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16642,cg06014776,-0.00000337,0.00000622,-0.541227832,0.588739277,loss,ns,0.000011,0.0000106,1.039559902,0.29935453,pos,ns,-0.001559735,0.003095487,-0.503873832,0.61470793,neg,ns,0.211331184,0.000117937,0.000106454,1.107870955,0.268776385,pos,ns,0.913064199,Six2,Six2_Intron,17,85797631,85797680,85797679,85797680,50,+,AACCTTAACTAAATTGTGCTCATTCAACATGTGCCCTTTTGATTAGTCCG,"Intron (Gm29418-201/Gm29418-201, intron 3 of 4)",17,85684277,85688274,3998,2,Six2-202,-109357,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,4,20472,ENSMUSG00000024134,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
18029,cg22069272,-0.000013,0.00000846,-1.532152495,0.126504654,loss,ns,0.0000149,0.0000144,1.03947165,0.299395487,pos,ns,-0.003507328,0.004208427,-0.83340573,0.405257604,neg,ns,0.392268827,-0.000178872,0.000144727,-1.2359222,0.217423174,neg,ns,0.550815613,Pcdh9,Pcdh9_Exon,14,93326745,93326794,93326745,93326746,50,-,CGTCCTGTGGCTGAACCAGAGGAAGAGGGTGTGAGATCAGGGTTCCACTA,"Exon (Pcdh9-208/Pcdh9, exon 4 of 5)",14,93013410,93890669,877260,2,Pcdh9-208,563875,Pcdh9-208;Pcdh9-204;Pcdh9-202;Pcdh9-207;Pcdh9-201;Pcdh9-206,Pcdh9;Pcdh9;Pcdh9;Pcdh9;Pcdh9;Pcdh9,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,10,211712,ENSMUSG00000055421,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4336,cg00542737,0.0000222,0.000014,1.586796237,0.113578247,gain,ns,0.0000247,0.0000238,1.03939161,0.299432635,pos,ns,0.034711067,0.006967186,4.982078665,0.00000105,pos,ns,5.979945328,-0.00026363,0.000239601,-1.100285994,0.272061194,neg,ns,0.304281574,Gm6081,Gm6081_Intron,13,28416367,28416416,28416415,28416416,50,+,TCAGGCCTGTATTTCTAAAAATGCTACGGTCTAGTAACCCCACTGTCCCG,"Intron (Gm40841-202/Gm40841-202, intron 2 of 3)",13,28510744,28511232,489,2,Gm6081-201,94816,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,606729,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
4956,cg14814195,0.0000133,0.00000391,3.399134491,0.000764386,gain,ns,0.00000689,0.00000663,1.039166642,0.299537064,pos,ns,0.00509852,0.001943794,2.622973682,0.009147448,pos,ns,2.038700061,-0.0000882,0.0000668,-1.319418118,0.188003012,neg,ns,0.0345102,Foxq1,Foxq1_Exon,13,31559450,31559499,31559450,31559451,50,+,CGACCCCTCGCGGCCCTGGGGCAAGGACAACTACTGGATGCTCAACCCCA,"Exon (Foxq1-201/Foxq1, exon 1 of 1)",13,31556134,31560976,4843,1,Foxq1-201,3316,A530084C06Rik-201;Foxq1-201,A530084C06Rik;Foxq1,-117;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,15220,ENSMUSG00000038415,conserved gene and region,13,31558747,31559461,715,*,715,84,0.676923077,1.026175506,0.117482518,2.82E-70,CpGisland,TRUE,NA,NRS
24929,cg00716372,-0.00000282,0.00000261,-1.078460815,0.281666595,loss,ns,0.00000461,0.00000444,1.03908643,0.299574304,pos,ns,0.002788763,0.001301107,2.143377597,0.032860764,pos,ns,1.483322339,-0.0000446,0.0000447,-0.996481024,0.319793656,neg,ns,0.96352589,Stk35,Stk35_Exon,2,129811075,129811124,129811075,129811076,50,+,CGCAGGACTTCCATGTCTGAGGGGATCAAGCAGCTCTTGAAAGATATGTT,"Exon (Stk35-201/Stk35, exon 3 of 4)",2,129800517,129828974,28458,1,Stk35-201,10558,Stk35-201;Stk35-202,Stk35;Stk35,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,67333,ENSMUSG00000037885,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1193,cg14370345,0.0000434,0.00000928,4.670030903,0.00000449,gain,ns,-0.0000164,0.0000158,-1.039048731,0.299591808,neg,ns,0.01016387,0.004620454,2.199755629,0.028562037,pos,ns,1.544210823,-0.000260079,0.000158897,-1.63677792,0.102691615,neg,ns,0.731896647,Gm14512,Gm14512_Intergenic_downstream,X,12008042,12008091,12008042,12008043,50,-,CGAAGATAGGAAAATCTTATTTGTTTAATAATAAGTCACTCATGAATATG,Distal Intergenic,20,11984468,11984697,230,1,Gm14512-201,23623,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,22,22,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17232,cg14727354,0.00000522,0.00000139,3.766009901,0.000198451,gain,ns,-0.00000245,0.00000236,-1.03888621,0.299667274,neg,ns,0.000112332,0.000689961,0.162808774,0.870775077,pos,ns,0.06009401,0.0000155,0.0000237,0.652538231,0.514537599,pos,ns,0.035640081,Nog,Nog_Intergenic_downstream,11,89299206,89299255,89299254,89299255,50,+,GGGGAATAATGCCGTTATTCCTCGGCTCTCAGTTAATGAATACCCTAACG,Downstream (1-2kb),11,89300638,89302332,1695,2,Nog-201,3077,Nog-201,Nog,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,16,36,18121,ENSMUSG00000048616,conserved gene and region,11,89299182,89299479,298,*,298,24,0.657718121,0.788099174,0.080536913,2.71E-16,CpGisland,TRUE,U3,Pr-B
14351,cg00566855,-0.00000573,0.0000114,-0.504576659,0.614214672,loss,ns,0.0000201,0.0000193,1.038861521,0.299678739,pos,ns,0.012543737,0.005656327,2.217647036,0.027303715,pos,ns,1.563778255,-0.000492373,0.000194521,-2.531211496,0.011861079,neg,ns,0.720436589,Gm49676,Gm49676_Intergenic_downstream,16,75249406,75249455,75249406,75249407,50,+,CGCTCTAATACATTTAGTGTTTTGTGCTACATTTAACAAGATTAAGTGAA,Distal Intergenic,16,75147233,75147829,597,1,Gm49676-201,102173,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20470,cg09554213,0.0000541,0.00000709,7.622714563,3.06E-13,gain,yes,-0.0000125,0.0000121,-1.038845433,0.29968621,neg,ns,0.012212806,0.003531126,3.458615175,0.000618937,pos,ns,3.208353761,-0.000283252,0.000121435,-2.332535535,0.02031234,neg,ns,0.114517472,Hoxc4,Hoxc4_Intergenic_downstream,15,103061690,103061739,103061690,103061691,50,+,CGCGTGATTTATGACTTCAATCTTGGTTCACCGAGAGTTCACACGGCTTT,Distal Intergenic,15,103034395,103036852,2458,1,Hoxc4-201,27295,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,32,91,15423,ENSMUSG00000075394,mapped to different genes,15,103061537,103061809,273,*,273,19,0.586080586,0.8125,0.06959707,7.69E-12,CpGisland,TRUE,U13,Hc-P
3518,cg21547425,0.0000873,0.0000101,8.64560159,2.92E-16,gain,yes,-0.0000178,0.0000172,-1.038828885,0.299693895,neg,ns,0.010700972,0.005024622,2.129706941,0.033983319,pos,ns,1.468734208,-0.000469827,0.000172796,-2.718962579,0.006917628,neg,ns,0.193444839,Bcl11a,Bcl11a_Intergenic_downstream,11,24305297,24305346,24305297,24305298,50,-,CGTCTAATTAGGCTTGACACTGCCGAGGCGTTTCCCTGACATTTATGTCA,Distal Intergenic,11,24142379,24163291,20913,1,Bcl11a-206,162967,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,15,98,14025,ENSMUSG00000000861,mapped to different genes,11,24305202,24305326,125,*,125,10,0.624,0.823994726,0.08,0.000000531,CpGisland,TRUE,U9,En-Pp
24718,cg11464067,-0.0000497,0.0000151,-3.287999324,0.001125006,loss,ns,-0.0000267,0.0000257,-1.038763888,0.299724082,neg,ns,-0.019988923,0.007520982,-2.657754246,0.008274179,neg,ns,2.082275105,0.000233954,0.000258646,0.90453431,0.366414557,pos,ns,0.643007265,Ccnt2,Ccnt2_Exon,1,127803403,127803452,127803451,127803452,50,-,ACATCTCAGCACCCTCGTGAAACTGGACAAGAAGCCAGTGGAGACCAACG,"Exon (Ccnt2-202/Ccnt2, exon 10 of 10)",1,127774164,127805932,31769,1,Ccnt2-202,29239,Ccnt2-202;Ccnt2-201;Ccnt2-207,Ccnt2;Ccnt2;Ccnt2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,11,72949,ENSMUSG00000026349,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11679,cg23552174,-0.00000162,0.00000192,-0.843114717,0.399814343,loss,ns,-0.00000338,0.00000326,-1.038653108,0.299775536,neg,ns,-0.001578226,0.000954737,-1.653047493,0.099333522,neg,ns,1.002904166,0.0000479,0.0000328,1.459281433,0.145500199,pos,ns,0.063467021,Dnajb12,Dnajb12_fiveUTR,10,59879674,59879723,59879674,59879675,50,+,CGCCATGGAATCCAACAAGGATGAAGCTGAGCGCTGTATCAGCATCGCCC,Promoter (<=1kb),10,59879556,59899302,19747,1,Dnajb12-205,118,Dnajb12-205;Dnajb12-202;Dnajb12-204;Dnajb12-203;Dnajb12-201,Dnajb12;Dnajb12;Dnajb12;Dnajb12;Dnajb12,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,3,56709,ENSMUSG00000020109,conserved gene and region,10,59879230,59880022,793,*,793,81,0.640605296,0.995752399,0.102143758,2.49E-62,CpGisland,TRUE,U1,Pr-A
24086,cg12188278,0.0000114,0.00000416,2.735028252,0.006596544,gain,ns,-0.00000735,0.00000707,-1.038335409,0.299923131,neg,ns,-0.003528424,0.002072454,-1.702534039,0.089657716,neg,ns,1.04741233,0.000141369,0.0000713,1.98352576,0.048190702,pos,ns,0.911868259,Zic5,Zic5_Intergenic_downstream,14,122455434,122455483,122455482,122455483,50,-,CATAGAAATCTTAACACACCATGAAGATTGTCCGAGCGCCAAGCCTTCCG,Distal Intergenic,14,122459193,122460021,829,2,Zic5-202,4587,Zic5-201;Zic5-202,Zic5;Zic5,0;4538,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,14,26,65100,ENSMUSG00000041703,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
20967,cg23476546,0.00000656,0.00000372,1.762073067,0.079042495,gain,ns,-0.00000656,0.00000632,-1.038329016,0.299926101,neg,ns,0.002158192,0.001852163,1.165227813,0.244822607,pos,ns,0.611148483,-0.0000763,0.0000637,-1.198232058,0.23174195,neg,ns,0.903334891,Zfp326,Zfp326_Exon,5,105888552,105888601,105888552,105888553,50,+,CGATTTGAGAGCTCCTACCGGAATAGCCTTGACTCTTTCGGAGGTAGAAA,"Exon (Zfp326-201/Zfp326, exon 5 of 12)",5,105876565,105914780,38216,1,Zfp326-209,11987,Zfp326-209;Zfp326-208;Zfp326-201;Zfp326-205;Zfp326-206;Zfp326-202;Zfp326-203;Zfp326-204,Zfp326;Zfp326;Zfp326;Zfp326;Zfp326;Zfp326;Zfp326;Zfp326,0;0;0;0;0;11611;0;-2343,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,11,54367,ENSMUSG00000029290,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25987,cg23209537,0.0000148,0.00000487,3.035723133,0.002603077,gain,ns,-0.00000858,0.00000827,-1.037794533,0.30017452,neg,ns,-0.003035749,0.002422748,-1.253019163,0.211143034,neg,ns,0.675423243,0.000162189,0.0000833,1.946627199,0.052482513,pos,ns,0.253786516,Tnrc18,Tnrc18_fiveUTR,5,142817558,142817607,142817606,142817607,50,+,AATCCAGGTAGCGCCGGTTTAAAGAATCCCAAATCTCCATATACAGCCCG,Promoter (<=1kb),5,142754789,142817662,62874,2,Tnrc18-201,55,Tnrc18-201;Tnrc18-205,Tnrc18;Tnrc18,0;-178,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,7,231861,ENSMUSG00000039477,conserved gene but different region,5,142816996,142817607,612,*,612,69,0.671568628,1.030705394,0.112745098,1.90E-56,CpGisland,TRUE,NA,NRS
19538,cg15900573,0.000000334,0.00000705,0.047345732,0.962268167,gain,ns,0.0000124,0.000012,1.037768289,0.300186721,pos,ns,0.004335579,0.003507322,1.236150921,0.217338278,pos,ns,0.662863779,-0.000194248,0.000120617,-1.610456332,0.108315998,neg,ns,0.162425099,Aqp6,Aqp6_Intergenic_downstream,15,99614893,99614942,99614893,99614894,50,-,CGTTAAAGCAAAGCAGCTGGAAAGGGCTTAGCCCTTTAATGCCGGCAGCT,Distal Intergenic,15,99601400,99604481,3082,1,Aqp6-202,13542,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,11831,ENSMUSG00000043144,mapped to different genes,15,99614858,99614894,37,*,37,6,0.783783784,1.067307692,0.162162162,0.00000461,CpGisland,TRUE,NA,NRS
23100,cg17355973,0.0000831,0.0000112,7.384453192,1.42E-12,gain,yes,-0.0000198,0.0000191,-1.037562753,0.30028229,neg,ns,0.005491474,0.005598625,0.980861286,0.327426014,pos,ns,0.484886819,-0.000180352,0.000192536,-0.936718708,0.349632435,neg,ns,0.573055626,Rnf220,Rnf220_Intron,4,117302335,117302384,117302335,117302336,50,-,CGCATTCCTAAGTACAATATTCATGGGCTGGGCTGACACTTTTAATTAAG,"Intron (Rnf220-201/Rnf220, intron 3 of 14)",4,117271463,117497052,225590,2,Rnf220-201,194668,Rnf220-201;Rnf220-202;Rnf220-208;Rnf220-207,Rnf220;Rnf220;Rnf220;Rnf220,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26638,cg04700737,-0.0000148,0.00000918,-1.610369277,0.108334999,loss,ns,0.0000162,0.0000156,1.037535494,0.300294966,pos,ns,0.00710452,0.00456993,1.554623246,0.121056112,pos,ns,0.917013277,-0.000444065,0.00015716,-2.825571354,0.005025891,neg,ns,0.433218637,Hmgb1,Hmgb1_Intron,5,149053151,149053200,149053151,149053152,50,-,CGGGGACACGTCATCAAGGATTGAAACAGCGCGCAAATCTGAATGTGTGT,"Intron (Hmgb1-210/Hmgb1, intron 2 of 5)",5,149048793,149184489,135697,2,Hmgb1-210,131289,Hmgb1-201;Hmgb1-203;Hmgb1-202;Hmgb1-210;Hmgb1-209;Hmgb1-208;Hmgb1-207;Hmgb1-206;Hmgb1-205;Hmgb1-204,Hmgb1;Hmgb1;Hmgb1;Hmgb1;Hmgb1;Hmgb1;Hmgb1;Hmgb1;Hmgb1;Hmgb1,0;-1851;0;0;-2704;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,3,15289,ENSMUSG00000066551,mapped to different genes,5,149052996,149053693,698,*,698,62,0.699140401,0.738044887,0.088825215,7.39E-44,CpGisland,TRUE,U2,Pr-W
26309,cg21535848,0.0000353,0.0000113,3.136129543,0.001876128,gain,ns,-0.0000199,0.0000191,-1.037419368,0.300348973,neg,ns,0.013088891,0.005607055,2.334361131,0.020215263,pos,ns,1.694320598,-0.000420606,0.000192826,-2.181267873,0.029914722,neg,ns,0.836131441,Ralgapa2,Ralgapa2_Intron,2,146330942,146330991,146330990,146330991,50,+,AGAAGGAGTCGTCTGTTTGATTGAAGAATTCCTGCTCCTCAGTGGGCCCG,"Intron (Ralgapa2-202/Ralgapa2, intron 36 of 40)",2,146239879,146512004,272126,2,Ralgapa2-202,181013,Ralgapa2-202;Ralgapa2-211;Ralgapa2-210;Ralgapa2-205;Ralgapa2-208,Ralgapa2;Ralgapa2;Ralgapa2;Ralgapa2;Ralgapa2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,26,241694,ENSMUSG00000037110,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8326,cg07744194,-0.0000531,0.0000106,-4.98960114,0.00000101,loss,yes,-0.0000187,0.0000181,-1.03727567,0.30041581,neg,ns,-0.017273852,0.005292621,-3.263761244,0.001222265,neg,ns,2.912834549,0.000545295,0.000182013,2.995913174,0.002957036,pos,ns,0.718283341,Zeb2,Zeb2_Intron,2,45023936,45023985,45023984,45023985,50,+,CTCAATTGAAGGTGGCTGTTTCTGAATTAGTCAGCCCTCACAGGCTCTCG,"Intron (Zeb2-212/Zeb2, intron 3 of 10)",2,44983632,45117395,133764,2,Zeb2-212,93410,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-227;Zeb2-216;Zeb2-229;Zeb2-218;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24304,cg19950962,0.0000715,0.00000875,8.163847614,8.26E-15,gain,yes,-0.0000154,0.0000149,-1.037274756,0.300416235,neg,ns,0.012975361,0.004356871,2.97813758,0.003128904,pos,ns,2.504607716,-0.000394472,0.000149832,-2.632752209,0.008893934,neg,ns,0.143806517,Pou3f1,Pou3f1_Intron,4,124575873,124575922,124575873,124575874,50,-,CGCGCCCAGTAGAATATTGTATTAGTTGGTTGTGAGCTGTGTTCTCGTCA,"Intron (Gm2164-201/Gm2164-201, intron 1 of 1)",4,124656807,124660655,3849,1,Pou3f1-201,-80934,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,43,85,18991,ENSMUSG00000090125,mapped to different genes,4,124575578,124575876,299,*,299,39,0.765886288,0.889473684,0.130434783,6.52E-35,CpGisland,TRUE,U13,Hc-P
567,cg11887895,0.000108752,0.00000891,12.19916913,3.19E-28,gain,yes,-0.0000157,0.0000151,-1.037182938,0.300458948,neg,ns,0.010673233,0.004436956,2.405530404,0.0167345,pos,ns,1.776387251,0.00000653,0.000152587,0.042799511,0.965888907,pos,ns,0.227143297,Dlx5,Dlx5_fiveUTR,6,6882085,6882134,6882133,6882134,50,+,TGGCTGAGGCGCAGCACAGCCTTGGTTAAATCCTTAATTGCGCGCTTACG,Promoter (<=1kb),6,6877805,6882085,4281,2,Dlx5-201,0,Dlx5-202;Dlx5-201;Dlx5-203,Dlx5;Dlx5;Dlx5,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,6,13395,ENSMUSG00000029755,conserved gene and region,6,6881983,6882197,215,*,215,16,0.655813954,0.763087844,0.074418605,1.72E-10,CpGisland,TRUE,NA,NRS
5570,cg10277318,0.000000443,0.00000287,0.154402364,0.877392963,gain,ns,0.00000506,0.00000488,1.037137071,0.300480286,pos,ns,0.003799051,0.00142847,2.659524964,0.008231794,pos,ns,2.084505487,-0.000143259,0.0000491,-2.916209836,0.003801601,neg,ns,0.935578917,Pbx3,Pbx3_Intron,2,34275832,34275881,34275832,34275833,50,-,CGATCACTGCAAATACAGATGCAAGGCCAGTCCCTATTTAATATGCGTGT,"Intron (Pbx3-202/Pbx3, intron 2 of 7)",2,34171457,34372038,200582,2,Pbx3-202,96157,Pbx3-202;Pbx3-201;Pbx3-210;Pbx3-206;Pbx3-207;Pbx3-209;Pbx3-204;Pbx3-205;Pbx3-203,Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,82,18516,ENSMUSG00000038718,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23085,cg06573357,0.0000135,0.00000633,2.139560909,0.033170912,gain,ns,-0.0000112,0.0000108,-1.036958075,0.300563568,neg,ns,-0.007979425,0.003150186,-2.533001193,0.011801941,neg,ns,1.928046576,0.000238023,0.000108335,2.19710639,0.028752563,pos,ns,0.801575098,Rnf220,Rnf220_Intron,4,117283314,117283363,117283314,117283315,50,+,CGGTCTTGGCAGGCAATCTAATTCCTCCTGAAAAGGTCACCGCCATTTTA,"Intron (Rnf220-201/Rnf220, intron 8 of 14)",4,117271463,117497052,225590,2,Rnf220-201,213689,Rnf220-201;Rnf220-203;Rnf220-212;Rnf220-202;Rnf220-205;Rnf220-209;Rnf220-213;Rnf220-210;Rnf220-206;Rnf220-208,Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20764,cg03793834,0.00000824,0.00000222,3.712853848,0.000242937,gain,ns,0.00000391,0.00000377,1.036816008,0.300629679,pos,ns,0.002044167,0.001104754,1.850336849,0.06521636,pos,ns,1.185643445,-0.0000278,0.000038,-0.732423501,0.464463513,neg,ns,0.034731745,Rgs7bp,Rgs7bp_Promoter,13,105054965,105055014,105055013,105055014,50,-,CCGGGAACATCAATTGCAATATTACTTCATCTGCTCTATTATTAGAAACG,Promoter (<=1kb),13,104945904,105054930,109027,2,Rgs7bp-201,-84,Rgs7bp-201,Rgs7bp,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,7,52882,ENSMUSG00000021719,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
14360,cg17765061,-0.000000806,0.00000207,-0.38928046,0.697335962,loss,ns,0.00000365,0.00000352,1.03666952,0.300697857,pos,ns,-0.001777232,0.001030897,-1.723967524,0.085710652,neg,ns,1.066965199,0.0000637,0.0000355,1.79806646,0.073139339,pos,ns,0.030560276,Smad7,Smad7_Exon,18,75369456,75369505,75369504,75369505,50,+,TCTCAGGCATTCCTCGGAAGTCAAGAGGCTGTGTTGCTGTGAATCTTACG,"Exon (Smad7-201/Smad7, exon 1 of 4)",18,75367529,75395935,28407,1,Smad7-201,1927,Smad7-201;Smad7-202;Smad7-205;Smad7-204,Smad7;Smad7;Smad7;Smad7,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,19,17131,ENSMUSG00000025880,conserved gene and region,18,75368486,75369554,1069,*,1069,115,0.705332086,0.865343329,0.107577175,4.83E-91,CpGisland,TRUE,U1,Pr-A
2181,cg13532357,0.0000109,0.00000728,1.502406879,0.134010009,gain,ns,-0.0000128,0.0000124,-1.036660809,0.300701911,neg,ns,-0.000209665,0.003625218,-0.057835227,0.95391714,neg,ns,0.020489348,-0.0000831,0.000124671,-0.666327663,0.505697255,neg,ns,0.762706415,Pou6f2,Pou6f2_Intron,13,18287552,18287601,18287600,18287601,50,-,CATTATCTGGGACTTGGCTCCTTTTCTGCCATCCGGTATTAATGAAACCG,"Intron (Pou6f2-201/Pou6f2, intron 2 of 7)",13,18121098,18382041,260944,2,Pou6f2-201,94440,Pou6f2-201;Pou6f2-202;Pou6f2-203,Pou6f2;Pou6f2;Pou6f2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,18,218030,ENSMUSG00000009734,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9619,cg21226616,0.0000758,0.0000182,4.156396157,0.0000419,gain,ns,-0.0000321,0.000031,-1.036484555,0.300783958,neg,ns,0.020621219,0.009073104,2.272785551,0.023723359,pos,ns,1.624823813,-0.000505969,0.000312023,-1.62157595,0.105910776,neg,ns,0.402460059,Epc2,Epc2_Exon,2,49548658,49548707,49548658,49548659,50,+,CGGACTTCAGCACCATCGCCAACAGCCTTAAAACTTGCCACAGTTGCTGC,"Exon (Epc2-201/Epc2, exon 13 of 14)",2,49451486,49551948,100463,1,Epc2-201,97172,Epc2-201,Epc2,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,14,227867,ENSMUSG00000069495,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7566,cg25997629,0.000103,0.0000185,5.575648047,5.37E-08,gain,yes,-0.0000325,0.0000314,-1.036381095,0.300832126,neg,ns,0.021711056,0.009194287,2.361363665,0.01882618,pos,ns,1.725237792,-0.000156779,0.000316191,-0.495837795,0.620360192,neg,ns,0.318222846,Zbtb20,Zbtb20_Intron,16,43259667,43259716,43259715,43259716,50,-,ATCCCCATCCCCCACTGCCCAAGCAACTTTTCTTGATTAGGTAAAGGTCG,"Intron (Zbtb20-209/Zbtb20, intron 5 of 7)",16,42875881,43463175,587295,1,Zbtb20-209,383786,Zbtb20-209;Zbtb20-211;Zbtb20-217;Zbtb20-218;Zbtb20-204;Zbtb20-215;Zbtb20-212;Zbtb20-201;Zbtb20-203,Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,98,56490,ENSMUSG00000022708,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18865,cg09882188,0.0000153,0.00000271,5.664455008,3.37E-08,gain,yes,-0.00000477,0.0000046,-1.036334361,0.300853886,neg,ns,0.003462498,0.001347215,2.570114827,0.010633362,pos,ns,1.973329402,-0.000132519,0.0000463,-2.860295793,0.004519798,neg,ns,0.028511001,E130114P18Rik,E130114P18Rik_Intron,4,97775261,97775310,97775309,97775310,50,+,CCTAGAGGGCGCAAACAATCGTCCCATATCCAAAAGTCTTACGAAGGGCG,"Intron (Nfia-208/Nfia, intron 1 of 3)",4,97568133,97778048,209916,2,E130114P18Rik-204,2738,E130114P18Rik-204;E130114P18Rik-205;Nfia-208;Nfia-202;Nfia-203;Nfia-205;Nfia-201;Nfia-204,E130114P18Rik;E130114P18Rik;Nfia;Nfia;Nfia;Nfia;Nfia;Nfia,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,24,319865,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
15965,cg21090817,0.0000659,0.0000104,6.363064707,7.10E-10,gain,yes,0.0000182,0.0000176,1.036148994,0.300940204,pos,ns,0.014290253,0.005152687,2.77335935,0.005884181,pos,ns,2.230314002,-0.000526841,0.0001772,-2.973133314,0.003178914,neg,ns,0.301436707,Gm8447,Gm8447_Intron,13,84059763,84059812,84059763,84059764,50,+,CGAAAGGTTTCTGAAGTTCACAGGCTCAGAGCCTTTGTTATGCTAACAGA,"Intron (Gm17750-201/Gm17750-201, intron 1 of 1)",13,83997547,83998439,893,2,Gm8447-201,-61324,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,9,667081,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14223,cg01521169,0.00000171,0.000000674,2.530426394,0.011887106,gain,ns,-0.00000119,0.00000115,-1.036052872,0.300984971,neg,ns,0.001281403,0.00033547,3.81972574,0.000161387,pos,ns,3.792131816,-0.000032,0.0000115,-2.769729536,0.005948521,neg,ns,0.020644353,Onecut1,Onecut1_Exon,9,74848431,74848480,74848431,74848432,50,-,CGAACCTTTCGATTGTAACTGGGACAATTTGCATAGTGATTCCCTTTCAG,"Exon (Gm16551-203/Gm16551-203, exon 1 of 3)",9,74861921,74891781,29861,1,Onecut1-201,-13490,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,16,28,15379,ENSMUSG00000043013,conserved gene and region,9,74848332,74848441,110,*,110,13,0.654545455,1.111111111,0.118181818,3.31E-11,CpGisland,TRUE,U1,Pr-A
21984,cg08992395,0.0000248,0.0000034,7.284736567,2.68E-12,gain,yes,-0.00000598,0.00000578,-1.035934099,0.301040292,neg,ns,0.004922384,0.001692492,2.908364727,0.003895652,pos,ns,2.409419817,-0.0000515,0.0000582,-0.885198967,0.376735416,neg,ns,0.053136305,Dmrta2,Dmrta2_Promoter,4,109974695,109974744,109974743,109974744,50,+,AGTTTAATATCATCTCTATTAGGCTGCCGGGAGGGTAATTAAACGGGACG,Promoter (3-4kb),4,109978053,109983687,5635,1,Dmrta2-201,-3309,Dmrta2-201,Dmrta2,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,7,13,242620,ENSMUSG00000047143,conserved gene and region,4,109974722,109974905,184,*,184,15,0.60326087,0.917553192,0.081521739,1.96E-10,CpGisland,TRUE,U13,Hc-P
24064,cg19719034,0.00000489,0.00000893,0.548069085,0.584038897,gain,ns,0.0000157,0.0000152,1.035779255,0.301112426,pos,ns,-0.002159501,0.004444754,-0.485853888,0.627413996,neg,ns,0.202445797,-0.000015,0.000152855,-0.098435078,0.921650439,neg,ns,0.76741227,Clybl,Clybl_Intron,14,122373663,122373712,122373711,122373712,50,+,TAGTGTGGGTTCTTGTTTGACTGGCACGGCTTATTGGACTATAACAAGCG,"Intron (Clybl-201/Clybl, intron 3 of 7)",14,122181704,122402234,220531,1,Clybl-201,191959,Clybl-201;Clybl-202,Clybl;Clybl,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,13,69634,ENSMUSG00000025545,mapped to different genes,14,122373642,122373780,139,*,139,10,0.532374101,1.034226191,0.071942446,0.00000141,CpGisland,TRUE,U15,NS
23386,cg13598074,0.0000402,0.00000744,5.396908426,0.000000135,gain,yes,0.0000131,0.0000126,1.035657489,0.301169158,pos,ns,0.003176873,0.003704809,0.857499636,0.391831256,pos,ns,0.406900924,0.0000493,0.000127408,0.387068893,0.698970792,pos,ns,0.229212439,Sox21,Sox21_Intergenic_downstream,14,118230315,118230364,118230363,118230364,50,+,ATTCATCAATTGTTCTGCCTTGTAGATCGCATTCTAATGCTAATCTAGCG,Downstream (2-3kb),14,118233232,118237030,3799,2,Sox21-201,6666,Sox21-201,Sox21,6666,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,26,27,223227,ENSMUSG00000061517,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
10947,cg23429416,0.00000467,0.00000486,0.961339988,0.337130481,gain,ns,-0.00000854,0.00000825,-1.035577347,0.301206502,neg,ns,-0.007482979,0.002416769,-3.096273545,0.002138745,neg,ns,2.669841006,-0.000193092,0.0000831,-2.323260491,0.020811882,neg,ns,0.820699058,Cyfip1,Cyfip1_Exon,7,55899956,55900005,55899956,55899957,50,-,CGAGAGTTCTTCCTGGAGCTGACCATGGGCAGGAGGATCCAGTTCCCCAT,"Exon (Cyfip1-201/Cyfip1, exon 17 of 31)",7,55842071,55932602,90532,1,Cyfip1-201,57885,Cyfip1-201;Cyfip1-202;Cyfip1-207;Cyfip1-203;Cyfip1-212;Cyfip1-209;Cyfip1-205;Cyfip1-206;Gm17907-201,Cyfip1;Cyfip1;Cyfip1;Cyfip1;Cyfip1;Cyfip1;Cyfip1;Cyfip1;Gm17907,0;0;0;0;0;0;0;0;3306,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,20430,ENSMUSG00000030447,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18428,cg16032551,0.00000226,0.00000707,0.318915403,0.750005439,gain,ns,0.0000124,0.000012,1.0353843,0.301296467,pos,ns,-0.000679671,0.003520589,-0.193056083,0.847041467,neg,ns,0.072095328,0.0000344,0.000121073,0.283778119,0.776769859,pos,ns,0.50223365,Ngfr,Ngfr_Intergenic_downstream,11,95555642,95555691,95555690,95555691,50,-,TCTGCAATTCTTTTCTCAGGCTCTTTACCCTCCTGAAGTCGTAAATGTCG,Distal Intergenic,11,95568818,95587735,18918,2,Ngfr-201,32093,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,18053,ENSMUSG00000000120,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6722,cg27625201,-0.00000306,0.00000121,-2.519346946,0.012259854,loss,ns,0.00000214,0.00000206,1.035259306,0.301354728,pos,ns,0.001238194,0.000604643,2.047808473,0.0414211,pos,ns,1.382778376,-0.0000546,0.0000208,-2.626486149,0.009055649,neg,ns,0.034721902,Pcdh1,Pcdh1_threeUTR,18,38185947,38185996,38185995,38185996,50,-,AATAATTACACGGGTCTTTCATTGACAGCTCAGCAAACAAACCGGAAACG,3' UTR,18,38185914,38212053,26140,2,Pcdh1-203,26057,Pcdh1-203;Pcdh1-204,Pcdh1;Pcdh1,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,10,17,75599,ENSMUSG00000051375,conserved gene but different region,18,38185887,38186045,159,*,159,14,0.566037736,1.156363636,0.088050315,3.20E-10,CpGisland,TRUE,U1,Pr-A
22141,cg13057591,0.0000671,0.00000691,9.699924189,1.33E-19,gain,yes,-0.0000122,0.0000117,-1.035113425,0.301422733,neg,ns,0.007688125,0.003441398,2.234011957,0.026195129,pos,ns,1.581779459,0.000106974,0.000118349,0.903884196,0.366758671,pos,ns,0.13375343,Bend5,Bend5_fiveUTR,4,111415168,111415217,111415216,111415217,50,-,GCCCACCATGTACGCCTTTGTGCGGTTCCTGGAGGACAACGTCTGCTACG,Promoter (<=1kb),4,111415207,111420538,5332,1,Bend5-205,0,Agbl4-205;Agbl4-206;Agbl4-201;Agbl4-202;Agbl4-209;Bend5-201;Bend5-204;Bend5-203;Bend5-205,Agbl4;Agbl4;Agbl4;Agbl4;Agbl4;Bend5;Bend5;Bend5;Bend5,0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,2,67621,ENSMUSG00000028545,conserved gene but different region,4,111414760,111415513,754,*,754,75,0.677718833,0.870348139,0.099469496,7.96E-57,CpGisland,TRUE,U2,Pr-W
16998,cg01577249,-0.0000301,0.00000886,-3.398087977,0.00076721,loss,ns,-0.0000156,0.000015,-1.034926703,0.301509792,neg,ns,-0.001698237,0.004408764,-0.385195586,0.700356673,neg,ns,0.154680729,0.0000192,0.000151617,0.126840795,0.899148638,pos,ns,0.583083626,Zfp423,Zfp423_Promoter,8,87803534,87803583,87803582,87803583,50,-,ACCCAGTAGCCAATAATAACACGTTATCCTATCAATTTGCTTCTGAAACG,Promoter (<=1kb),8,87661810,87804439,142630,2,Zfp423-203,856,Zfp423-203;Zfp423-202;Zfp423-201;Zfp423-207;Zfp423-206;Zfp423-205;Zfp423-204,Zfp423;Zfp423;Zfp423;Zfp423;Zfp423;Zfp423;Zfp423,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,1,53,94187,ENSMUSG00000045333,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27533,cg08235698,-0.0000018,0.00000275,-0.655145659,0.512859822,loss,ns,-0.00000484,0.00000467,-1.034921279,0.301512321,neg,ns,-0.002523593,0.001368897,-1.843522011,0.066207181,neg,ns,1.179094903,0.0000515,0.0000471,1.094047939,0.274783314,pos,ns,0.899498323,Gm5265,Gm5265_Intergenic_downstream,1,169283768,169283817,169283816,169283817,50,-,TAAAAAGTATACCTCTGGTGCAGTATCCTGCCAACAGTTTACTGACGACG,Distal Intergenic,1,169453528,169453869,342,2,Gm5265-201,170101,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,13,13,383613,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10472,cg26690989,-0.0000171,0.0000048,-3.564377841,0.000422187,loss,ns,0.00000845,0.00000816,1.034776988,0.301579609,pos,ns,0.002194554,0.002391114,0.917795606,0.359439381,pos,ns,0.444374342,-0.000103971,0.0000822,-1.264388611,0.207040372,neg,ns,0.074623598,Irf1,Irf1_Exon,11,53771301,53771350,53771301,53771302,50,-,CGGATGCGCATGAGACCCTGGCTAGAGATGCAGATTAATTCCAACCAAAT,"Exon (Irf1-202/Irf1, exon 2 of 10)",11,53770014,53777323,7310,1,Irf1-202,1287,Irf1-202;Irf1-208;Irf1-203;Irf1-205;Irf1-209;Irf1-207;Irf1-204;Irf1-201;Irf1-206;Irf1-210,Irf1;Irf1;Irf1;Irf1;Irf1;Irf1;Irf1;Irf1;Irf1;Irf1,0;0;0;0;0;0;0;0;0;-1803,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,16362,ENSMUSG00000018899,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
3581,cg01122656,-0.00000295,0.00000436,-0.677190965,0.498789835,loss,ns,-0.00000766,0.0000074,-1.034635018,0.301645824,neg,ns,-0.003134459,0.002168848,-1.445218069,0.149406733,neg,ns,0.825629831,0.0000918,0.0000746,1.230499018,0.219443166,pos,ns,0.783220393,Tsc2,Tsc2_Exon,17,24601401,24601450,24601401,24601402,50,-,CGCTCCTGTGCAGCTGTCCTTGGCAGCTGGACTGGTACAGGGAGGAGAAA,"Exon (Tsc2-217/Tsc2, exon 32 of 42)",17,24595816,24632627,36812,2,Tsc2-203,31177,Pkd1-201;Pkd1-205;Tsc2-203;Tsc2-201;Tsc2-205;Tsc2-212;Tsc2-210;Tsc2-219;Tsc2-217;Tsc2-221;Tsc2-207;Tsc2-208;Tsc2-215;Tsc2-211;Tsc2-206;Tsc2-216;Tsc2-222;Tsc2-209;Tsc2-204;Tsc2-214,Pkd1;Pkd1;Tsc2;Tsc2;Tsc2;Tsc2;Tsc2;Tsc2;Tsc2;Tsc2;Tsc2;Tsc2;Tsc2;Tsc2;Tsc2;Tsc2;Tsc2;Tsc2;Tsc2;Tsc2,51451;24857;0;0;0;-4343;-4346;-3094;0;0;-4152;-2319;0;2705;0;0;0;4100;0;7681,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,22084,ENSMUSG00000002496,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12146,cg11746914,-0.0000111,0.0000049,-2.262052635,0.024386347,loss,ns,-0.00000861,0.00000832,-1.034562306,0.30167974,neg,ns,-0.003249682,0.002438238,-1.332799215,0.183576442,neg,ns,0.736183053,0.0000865,0.0000839,1.031750642,0.302993208,pos,ns,0.952649634,Zfp618,Zfp618_Exon,4,63133116,63133165,63133116,63133117,50,+,CGAGTTCTACAGCCGGGCCAAGAAGATGAACCTCATCCAGAGCCTCAACA,"Exon (Zfp618-203/Zfp618, exon 15 of 15)",4,62965573,63139708,174136,1,Zfp618-203,167543,Zfp618-203;Zfp618-202,Zfp618;Zfp618,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,12,72701,ENSMUSG00000028358,conserved gene and region,4,63132931,63133130,200,*,200,14,0.625,0.717213115,0.07,6.89E-09,CpGisland,TRUE,NA,NRS
22616,cg01329059,-0.00000601,0.000013,-0.462810472,0.643824929,loss,ns,-0.0000228,0.0000221,-1.034506385,0.301705827,neg,ns,0.009019834,0.006463649,1.395470776,0.163872702,pos,ns,0.785493384,-0.000422983,0.000222284,-1.902893276,0.05798076,neg,ns,0.47533294,Msi1,Msi1_Exon,5,115436547,115436596,115436547,115436548,50,-,CGCACTAATCTGATCCAGCAGCTGTGATTGGAGGCCGCCTGCCCCCGGGG,"Exon (4930430O22Rik-202/4930430O22Rik-202, exon 1 of 1)",5,115429599,115455698,26100,1,Msi1-208,6948,Msi1-208;Msi1-209;Msi1-201;Msi1-203;Msi1-206;Msi1-205;Msi1-207;Msi1-204;Msi1-202,Msi1;Msi1;Msi1;Msi1;Msi1;Msi1;Msi1;Msi1;Msi1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,14,17690,ENSMUSG00000054256,conserved gene but different region,5,115436495,115436692,198,*,198,21,0.666666667,0.956521739,0.106060606,6.93E-17,CpGisland,TRUE,NA,NRS
13408,cg23734137,-0.0000703,0.0000109,-6.469610108,3.83E-10,loss,yes,0.0000191,0.0000185,1.034475321,0.301720319,pos,ns,-0.010053157,0.005409404,-1.858459166,0.064051526,neg,ns,1.193470522,0.000152308,0.000186029,0.818732107,0.413568202,pos,ns,0.837375552,Nr2f2,Nr2f2_Exon,7,70367534,70367583,70367582,70367583,50,+,TAACTATTCATTAATACCATAAATATGGGCTACAGAAGTTTTTCCTTGCG,Promoter (<=1kb),7,70354439,70366735,12297,2,Nr2f2-202,-799,Nr2f2-202,Nr2f2,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,24,69,11819,ENSMUSG00000030551,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
4405,cg16442610,-0.0000251,0.00000641,-3.923346669,0.000107592,loss,ns,-0.0000113,0.0000109,-1.034442053,0.301735838,neg,ns,-0.011114972,0.003188072,-3.486424769,0.00056021,neg,ns,3.251649459,0.000165651,0.000109638,1.510894629,0.131833942,pos,ns,0.865027604,Hnrnpl,Hnrnpl_Exon,7,28817338,28817387,28817338,28817339,50,+,CGCAGTGTATGTTTGATGGGACGCCATCTTTCAGAACTGTGCTAACTCAC,"Exon (Hnrnpl-213/Hnrnpl, exon 6 of 13)",7,28808541,28822266,13726,1,Hnrnpl-211,8797,Hnrnpl-211;Hnrnpl-206;Hnrnpl-202;Hnrnpl-204;Hnrnpl-201;Hnrnpl-209;Hnrnpl-212;Hnrnpl-213;Hnrnpl-208;Hnrnpl-207;Hnrnpl-203;Hnrnpl-205;Hnrnpl-210,Hnrnpl;Hnrnpl;Hnrnpl;Hnrnpl;Hnrnpl;Hnrnpl;Hnrnpl;Hnrnpl;Hnrnpl;Hnrnpl;Hnrnpl;Hnrnpl;Hnrnpl,0;8532;0;7820;0;0;6398;0;3960;0;0;0;-3826,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,4,15388,ENSMUSG00000015165,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12016,cg26987946,-5.18E-08,0.000000615,-0.084117428,0.933017362,loss,ns,-0.00000108,0.00000105,-1.034331937,0.301787214,neg,ns,0.000393263,0.00030625,1.284121189,0.200058428,pos,ns,0.698843147,-0.000017,0.0000105,-1.614652816,0.107403227,neg,ns,0.020234813,Anp32a,Anp32a_Exon,9,62341544,62341593,62341544,62341545,50,+,CGCCCTCTGATGTGAGCATTTGCCAAAAATATCTCTGTCGGTCCATTCTC,Promoter (<=1kb),9,62341293,62377701,36409,1,Anp32a-207,251,Anp32a-207;Anp32a-201;Anp32a-203;Anp32a-205;Anp32a-210;Anp32a-208;Anp32a-202,Anp32a;Anp32a;Anp32a;Anp32a;Anp32a;Anp32a;Anp32a,0;0;0;0;-871;-2470;-3206,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,9,11737,ENSMUSG00000032249,mapped to different genes,9,62340767,62341614,848,*,848,72,0.632075472,0.85274934,0.08490566,2.37E-49,CpGisland,TRUE,U1,Pr-A
3317,cg16509659,-0.0000106,0.00000417,-2.528510926,0.011950817,loss,ns,0.00000733,0.00000709,1.034309541,0.301797664,pos,ns,-0.000862834,0.002077284,-0.415366146,0.678161233,neg,ns,0.16866704,0.000000897,0.0000714,0.012553441,0.989992141,pos,ns,0.558815554,Eya4,Eya4_Intergenic_upstream,10,23562530,23562579,23562578,23562579,50,+,AAATAGTTAGGAAGCCATCCTGGTACTTCTCTTTGCTTTAATCAAAGTCG,Distal Intergenic,10,23104763,23350786,246024,2,Eya4-208,-211744,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,6,14051,ENSMUSG00000010461,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3199,cg22264773,-0.00000617,0.00000803,-0.767753626,0.443217961,loss,ns,0.0000141,0.0000136,1.03427429,0.301814112,pos,ns,-0.00128321,0.003998533,-0.320920176,0.748487122,neg,ns,0.125815668,0.0000677,0.000137509,0.492473708,0.622733104,pos,ns,0.841900884,Gm46443,Gm46443_Intergenic_upstream,14,23244671,23244720,23244719,23244720,50,-,CCCTTCATCATGTTTAATTTTACTTTTACTACCCTTCATTTGCTTTGACG,Distal Intergenic,14,23321144,23321507,364,1,Gm46443-201,-76473,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,12,12,108168141,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4820,cg26978121,-0.00000149,0.00000101,-1.478535783,0.140279768,loss,ns,-0.00000177,0.00000172,-1.034244719,0.30182791,neg,ns,0.000836461,0.000502718,1.663876027,0.097147691,pos,ns,1.012567519,-0.0000344,0.0000173,-1.987491935,0.047747534,neg,ns,0.971056609,Phf3,Phf3_Exon,1,30837204,30837253,30837252,30837253,50,-,CAATGGTATCATTGCCACTTTCTTTAACAACTCCTTCATCCATAATATCG,"Exon (Phf3-205/Phf3, exon 3 of 16)",1,30802339,30873581,71243,2,Phf3-205,36328,Phf3-205;Phf3-201;Phf3-204;Phf3-213;Phf3-212;Phf3-207;Phf3-209,Phf3;Phf3;Phf3;Phf3;Phf3;Phf3;Phf3,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,213109,ENSMUSG00000048874,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5111,cg14988225,-0.00000751,0.00000421,-1.782368575,0.075667761,loss,ns,0.0000074,0.00000716,1.033834902,0.302019181,pos,ns,0.00134043,0.002097333,0.639112011,0.523222015,pos,ns,0.281313991,0.0000207,0.0000721,0.286493157,0.774691807,pos,ns,0.929845978,Dnm1,Dnm1_Exon,2,32334718,32334767,32334718,32334719,50,+,CGAGATAACCATGTCCACACACTTGAGACACGGTTCTCGGATCTTCTTCA,"Exon (Dnm1-204/Dnm1, exon 10 of 22)",2,32308471,32353263,44793,2,Dnm1-204,18496,Dnm1-204;Dnm1-209;Dnm1-202;Dnm1-201;Dnm1-203;Dnm1-205;Dnm1-214;Dnm1-216;Dnm1-217,Dnm1;Dnm1;Dnm1;Dnm1;Dnm1;Dnm1;Dnm1;Dnm1;Dnm1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,16,13429,ENSMUSG00000026825,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24319,cg26833852,-0.000000253,0.00000588,-0.043040016,0.965697344,loss,ns,0.0000103,0.00000998,1.033816988,0.302027544,pos,ns,0.004029836,0.002924724,1.377851802,0.169242839,pos,ns,0.771489697,-0.000106896,0.000100581,-1.062787689,0.288705444,neg,ns,0.86863261,Sema6d,Sema6d_Exon,2,124654128,124654177,124654176,124654177,50,+,AGCCCATTTTTACTTGCAGATTCAAGGCAATATCCGGTTTTTAGAGGACG,"Exon (Sema6d-208/Sema6d, exon 7 of 21)",2,124089969,124667769,577801,1,Sema6d-208,564159,Sema6d-208;Sema6d-209;Sema6d-201;Sema6d-202;Sema6d-203;Sema6d-204;Sema6d-206;Sema6d-207;Sema6d-205,Sema6d;Sema6d;Sema6d;Sema6d;Sema6d;Sema6d;Sema6d;Sema6d;Sema6d,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,5,214968,ENSMUSG00000027200,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23105,cg20944964,0.000105197,0.0000196,5.36081178,0.000000162,gain,yes,-0.0000345,0.0000333,-1.033777445,0.302046004,neg,ns,0.025714886,0.00976669,2.632917122,0.008889713,pos,ns,2.051112247,-0.000749954,0.000335876,-2.232830931,0.026273804,neg,ns,0.238001084,Rnf220,Rnf220_Intron,4,117304065,117304114,117304065,117304066,50,-,CGGAGGGAGCTGACACGCTCCTTGGGAATTTATCACGCACCCAATTACAA,"Intron (Rnf220-201/Rnf220, intron 3 of 14)",4,117271463,117497052,225590,2,Rnf220-201,192938,Rnf220-201;Rnf220-202;Rnf220-208;Rnf220-207,Rnf220;Rnf220;Rnf220;Rnf220,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,4,117303937,117304101,165,*,165,11,0.654545455,0.630208333,0.066666667,0.000000724,CpGisland,TRUE,NA,NRS
24503,cg17749783,-0.00000111,0.000000471,-2.348277875,0.019488512,loss,ns,0.000000827,0.0000008,1.033503238,0.302174036,pos,ns,0.000494743,0.000234423,2.110471824,0.035618482,pos,ns,1.448324591,-0.0000187,0.00000806,-2.323561458,0.020795505,neg,ns,0.011153371,Gabpb1,Gabpb1_Promoter,2,126675199,126675248,126675199,126675200,50,+,CGGGGCCAGGAGCCCCGGAAACCCGGCGCCTTAATGCAATAAACAGGAAA,Promoter (<=1kb),2,126627442,126675568,48127,2,Gabpb1-206,320,Gabpb1-206;Gabpb1-205;Gabpb1-204;Gabpb1-201;Gabpb1-203;Gabpb1-202;Gabpb1-208;Gabpb1-207,Gabpb1;Gabpb1;Gabpb1;Gabpb1;Gabpb1;Gabpb1;Gabpb1;Gabpb1,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,4,12,14391,ENSMUSG00000027361,conserved gene but different region,2,126674561,126675949,1389,*,1389,168,0.699064075,0.9905509,0.120950324,2.65E-142,CpGisland,TRUE,U1,Pr-A
19907,cg25597949,-0.00000803,0.0000141,-0.567910406,0.570506893,loss,ns,0.0000248,0.000024,1.033493022,0.302178807,pos,ns,-0.003997781,0.007036481,-0.568150561,0.570344028,neg,ns,0.243863101,0.0000203,0.000241984,0.084095521,0.933034766,pos,ns,0.556028963,Nkx6-1,Nkx6-1_Intergenic_downstream,5,101646783,101646832,101646831,101646832,50,-,GCCCATATGTTACTCTAATAGTTGCTATAATTCTTGAGCAATGGGGCTCG,Distal Intergenic,5,101658139,101664996,6858,2,Nkx6-1-201,18213,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,10,18096,ENSMUSG00000035187,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
27059,cg22106907,-0.0000607,0.00000941,-6.44869877,4.32E-10,loss,yes,-0.0000165,0.000016,-1.033464369,0.302192187,neg,ns,-0.003247221,0.004683059,-0.69339749,0.48857933,neg,ns,0.311064911,-0.000381265,0.00016105,-2.367372082,0.018528751,neg,ns,0.715823365,Sec16b,Sec16b_Exon,1,157554791,157554840,157554791,157554792,50,+,CGGAAATCTTCGAGTACTGTCAGATGCTGGGCCGCCCCAAATCCTTCATC,"Exon (Sec16b-202/Sec16b, exon 17 of 28)",1,157506728,157568422,61695,1,Sec16b-202,48063,Sec16b-202;Sec16b-201;Sec16b-203;Sec16b-204,Sec16b;Sec16b;Sec16b;Sec16b,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,89867,ENSMUSG00000026589,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
21865,cg15122264,-0.0000438,0.0000104,-4.199824576,0.000035,loss,ns,-0.0000183,0.0000177,-1.033300165,0.302268877,neg,ns,-0.011176476,0.005187873,-2.15434643,0.031983277,neg,ns,1.495077046,-0.000140245,0.000178411,-0.786081959,0.432419918,neg,ns,0.768280598,Pde4d,Pde4d_Intron,13,109278853,109278902,109278901,109278902,50,-,TAGAACATGCCTGTCACTCCCAGCTGACTCTGATGACGCTCTTGCCAACG,"Intron (Pde4d-209/Pde4d, intron 3 of 16)",13,108654177,109951474,1297298,1,Pde4d-209,624676,Pde4d-209;Pde4d-220;Pde4d-210;Pde4d-214;Pde4d-208;Pde4d-218,Pde4d;Pde4d;Pde4d;Pde4d;Pde4d;Pde4d,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,7,238871,ENSMUSG00000021699,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10932,cg21460785,0.000128018,0.0000266,4.807137043,0.00000239,gain,ns,-0.0000467,0.0000452,-1.033224725,0.302304115,neg,ns,0.114467616,0.013254481,8.636144801,3.12E-16,pos,yes,15.50592146,-0.002277639,0.00045582,-4.996789542,0.000000976,neg,yes,0.676646703,Tcf7l2,Tcf7l2_Intron,19,55890224,55890273,55890272,55890273,50,-,TGGCTCCCTGTGGCTGACTTTTCATGACAACATGCCATTAGAAATTGCCG,"Intron (Tcf7l2-213/Tcf7l2, intron 4 of 13)",19,55741820,55933229,191410,1,Tcf7l2-213,148404,Tcf7l2-213;Tcf7l2-201;Tcf7l2-208;Tcf7l2-211;Tcf7l2-212;Tcf7l2-206;Tcf7l2-204;Tcf7l2-205;Tcf7l2-222;Tcf7l2-215;Tcf7l2-214;Tcf7l2-207;Tcf7l2-202;Tcf7l2-209;Tcf7l2-210;Tcf7l2-217;Tcf7l2-220;Tcf7l2-218,Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,55,88,21416,ENSMUSG00000024985,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24791,cg03352999,-0.00000297,0.00000155,-1.920229981,0.055746183,loss,ns,0.00000271,0.00000263,1.032992855,0.302412438,pos,ns,0.002325119,0.000769065,3.023307878,0.00270905,pos,ns,2.567183004,-0.0000677,0.0000264,-2.5594242,0.010958887,neg,ns,0.967325595,Smarcc2,Smarcc2_Exon,10,128463701,128463750,128463701,128463702,50,+,CGATTTCCAGAATCCATCACGCATGGACCGCAATGTGGAAATGTTTATGA,"Exon (Smarcc2-205/Smarcc2, exon 4 of 5)",10,128459248,128490482,31235,1,Smarcc2-205,4453,Smarcc2-205;Smarcc2-201;Smarcc2-202;Smarcc2-203;Smarcc2-206,Smarcc2;Smarcc2;Smarcc2;Smarcc2;Smarcc2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,16,68094,ENSMUSG00000025369,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9545,cg25408888,0.000100211,0.0000151,6.63222362,1.47E-10,gain,yes,-0.0000265,0.0000257,-1.032923274,0.30244495,neg,ns,0.024707624,0.007520256,3.285476175,0.001134785,pos,ns,2.945086555,-0.000627383,0.000258621,-2.425876848,0.015841907,neg,ns,0.333477816,Tra2a,Tra2a_Intron,6,49252537,49252586,49252585,49252586,50,+,CAAATGGCACTGGTCATGTAGATGCCTAACACCTAACATTTAAAGTACCG,"Intron (Tra2a-204/Tra2a, intron 1 of 7)",6,49243924,49264010,20087,2,Tra2a-204,11424,Tra2a-204;Tra2a-202;Tra2a-201;Tra2a-205,Tra2a;Tra2a;Tra2a;Tra2a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,7,101214,ENSMUSG00000029817,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13404,cg13848359,0.00000527,0.00000191,2.751372345,0.006283774,gain,ns,-0.00000336,0.00000325,-1.032912477,0.302449995,neg,ns,0.001766057,0.000952879,1.853390666,0.064776364,pos,ns,1.188583432,-0.0000537,0.0000328,-1.638436805,0.102345115,neg,ns,0.041261485,Nr2f2,Nr2f2_Exon,7,70365107,70365156,70365107,70365108,50,+,CGTAGGCATAGGAGAACGAAACTTCTGTACATTTTAATCTGAATAATTCT,"Exon (B130024G19Rik-206/B130024G19Rik-206, exon 1 of 1)",7,70354439,70366735,12297,2,Nr2f2-202,1579,Nr2f2-201;Nr2f2-202,Nr2f2;Nr2f2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,24,69,11819,ENSMUSG00000030551,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19632,cg05102921,-0.00000208,0.00000154,-1.347145267,0.178917337,loss,ns,-0.0000027,0.00000262,-1.032794957,0.302504912,neg,ns,-0.000216427,0.000767115,-0.282131512,0.778030932,neg,ns,0.109003136,-0.0000377,0.0000264,-1.427778662,0.154362173,neg,ns,0.963249493,Gm28267,Gm28267_Intergenic_upstream,9,100194521,100194570,100194569,100194570,50,-,TCCATATCAGCAGCCCTGATTAATATAGATCATGATTCATAAGCTTATCG,Distal Intergenic,9,100404495,100404759,265,1,Gm28267-201,-209974,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,29,29,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11908,cg12400088,0.0000533,0.0000111,4.817657797,0.00000228,gain,ns,-0.0000194,0.0000188,-1.032765874,0.302518503,neg,ns,0.006720515,0.005504395,1.220936059,0.223038032,pos,ns,0.651621076,-0.000262552,0.000189296,-1.386996642,0.166439231,neg,ns,0.118337595,Tank,Tank_Intergenic_downstream,2,61656436,61656485,61656436,61656437,50,+,CGTGCGGGGCAACTAATTATCCGTCTCATTTGAGAAGAGCAGCATTTGAG,Distal Intergenic,2,61643831,61649977,6147,1,Tank-211,12605,Tank-205;Tank-201;Tank-206;Tank-203;Tank-204;Tank-202;Tank-208,Tank;Tank;Tank;Tank;Tank;Tank;Tank,0;0;0;0;0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,17,21353,ENSMUSG00000064289,mapped to different genes,2,61656429,61656917,489,*,489,60,0.707566462,0.985887097,0.122699387,1.21E-51,CpGisland,TRUE,U3,Pr-B
14359,cg04154445,1.18E-08,0.0000021,0.005648241,0.995497013,gain,ns,0.00000368,0.00000356,1.032672572,0.302562109,pos,ns,-0.000368138,0.001043617,-0.352751488,0.724514477,neg,ns,0.139952932,0.0000218,0.0000359,0.607798909,0.543765848,pos,ns,0.046095323,Smad7,Smad7_Exon,18,75369422,75369471,75369470,75369471,50,-,CCCTCCTGCTGTGCAAAGTGTTCAGGTGGCCGGATCTCAGGCATTCCTCG,"Exon (Smad7-201/Smad7, exon 1 of 4)",18,75367529,75395935,28407,1,Smad7-201,1893,Smad7-201;Smad7-202;Smad7-205;Smad7-204,Smad7;Smad7;Smad7;Smad7,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,19,17131,ENSMUSG00000025880,conserved gene and region,18,75368486,75369554,1069,*,1069,115,0.705332086,0.865343329,0.107577175,4.83E-91,CpGisland,TRUE,U1,Pr-A
4079,cg00720180,-0.0000162,0.00000762,-2.130571248,0.033911384,loss,ns,0.0000134,0.0000129,1.032635554,0.30257941,pos,ns,-0.004253649,0.003793732,-1.12123087,0.263057393,neg,ns,0.579949489,0.0000329,0.000130466,0.252504026,0.800818843,pos,ns,0.869644085,Gm18089,Gm18089_Intergenic_upstream,18,26738898,26738947,26738946,26738947,50,+,ATTACTTCTCTTTTGTCCTTTCCTTAAGACAAATGATTTTGTAATTAGCG,Distal Intergenic,18,27008674,27009328,655,1,Gm18089-201,-269727,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,5,100416384,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21784,cg27010516,-1.68E-08,0.00000308,-0.00546951,0.995639502,loss,ns,0.0000054,0.00000523,1.032486049,0.302649295,pos,ns,0.003003129,0.001531358,1.961089299,0.050763561,pos,ns,1.29444792,-0.0000526,0.0000527,-0.999326882,0.318415763,neg,ns,0.927315495,Lmo1,Lmo1_Intron,7,109156021,109156070,109156069,109156070,50,+,ATTTCTTCCCTAGTGGTTAATAAATTCACTTCCAGATCAATTTGTTCACG,"Intron (Lmo1-201/Lmo1, intron 1 of 3)",7,109138572,109170519,31948,2,Lmo1-201,14449,Lmo1-201;Lmo1-202;Lmo1-203,Lmo1;Lmo1;Lmo1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,66,109594,ENSMUSG00000036111,conserved gene and region,7,109156067,109156111,45,*,45,10,0.777777778,1.480263158,0.222222222,7.78E-12,CpGisland,TRUE,U15,NS
3535,cg19083407,-0.00000792,0.0000055,-1.440103385,0.15084727,loss,ns,0.00000965,0.00000934,1.03248157,0.302651388,pos,ns,-0.000969594,0.002737141,-0.354236155,0.723402739,neg,ns,0.140619851,-0.0000747,0.0000941,-0.793128902,0.428309332,neg,ns,0.586435368,Pax8,Pax8_Exon,2,24435904,24435953,24435952,24435953,50,+,AAGGGGTGGAGCTAGAACTGGACACCTCGGGGGTTTCCTGCTTTATGGCG,"Exon (Pax8-201/Pax8, exon 9 of 12)",2,24420560,24475599,55040,2,Pax8-201,39646,Pax8-201;Pax8-204;Pax8-208;Pax8-203,Pax8;Pax8;Pax8;Pax8,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,6,18510,ENSMUSG00000026976,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21914,cg20796695,-0.0000131,0.00000413,-3.175069545,0.001648595,loss,ns,0.00000724,0.00000701,1.032336718,0.302719108,pos,ns,-0.000931199,0.002055096,-0.453116865,0.650781576,neg,ns,0.186564751,-0.000117336,0.0000707,-1.660227742,0.09787977,neg,ns,0.884962722,Rtl1,Rtl1_Exon,12,109712361,109712410,109712361,109712362,50,-,CGGTTGACCATGGTGTGTACGCTTTATTTGTGACGTAGGACACATGGTCT,"Exon (Mir1197-201/Mir1197-201, exon 1 of 1)",12,109589193,109600330,11138,2,Rtl1-201,-112080,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,9,353326,ENSMUSG00000085925,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13369,cg13424698,-0.0000403,0.00000634,-6.35101196,7.61E-10,loss,yes,0.0000111,0.0000108,1.03213797,0.302812041,pos,ns,0.000177074,0.003157594,0.056078616,0.955315305,pos,ns,0.019853264,-0.000134586,0.000108589,-1.239402105,0.216134099,neg,ns,0.649886707,Nr2f2,Nr2f2_Intergenic_downstream,7,70348618,70348667,70348666,70348667,50,-,CAAATTATAGAGTTCAGCTTCAACACACGCTCTGTCACCCGAGATCAGCG,Distal Intergenic,7,70353074,70355237,2164,2,Nr2f2-203,6619,Nr2f2-201;Nr2f2-203,Nr2f2;Nr2f2,0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,19,69,11819,ENSMUSG00000030551,mapped to different genes,7,70348586,70348733,148,*,148,10,0.533783784,1.020689655,0.067567568,0.00000248,CpGisland,TRUE,NA,NRS
586,cg12270819,0.0000504,0.0000135,3.731535051,0.000226328,gain,ns,-0.0000237,0.000023,-1.0321356,0.30281315,neg,ns,-0.020197482,0.006726084,-3.002859051,0.002892263,neg,ns,2.538762273,0.000493235,0.000231309,2.132360246,0.033762904,pos,ns,0.628282594,Macrod1,Macrod1_Intron,19,7068472,7068521,7068472,7068473,50,+,CGTGTCCATTAAATTCTATTTGACTTGATTATAATCATTAGCCGTGAATA,"Intron (Macrod1-201/Macrod1, intron 3 of 10)",19,7056810,7198057,141248,1,Macrod1-201,11662,Macrod1-201,Macrod1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,11,107227,ENSMUSG00000036278,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
14576,cg17179767,-0.00000947,0.00000306,-3.097212099,0.00213219,loss,ns,0.00000536,0.00000519,1.031866813,0.302938863,pos,ns,0.000907812,0.001521304,0.59673292,0.551121246,pos,ns,0.258752846,-0.000113607,0.0000523,-2.171492122,0.030652093,neg,ns,0.930652119,Fstl5,Fstl5_Intron,3,76573260,76573309,76573308,76573309,50,-,GCTTTAATGACAAAGGAAGTCATAATACAAACAGAACAATCCAGCTGCCG,"Intron (Fstl5-201/Fstl5, intron 8 of 15)",3,76074270,76710019,635750,1,Fstl5-201,498990,Fstl5-201;Fstl5-203,Fstl5;Fstl5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,213262,ENSMUSG00000034098,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
657,cg21996984,0.0000834,0.0000107,7.786160354,1.04E-13,gain,yes,0.0000188,0.0000182,1.031864076,0.302940143,pos,ns,0.016134323,0.005328906,3.027698736,0.002671126,pos,ns,2.573305587,-0.000151347,0.000183261,-0.825856547,0.409520589,neg,ns,0.580510165,Ppp1r3f,Ppp1r3f_Exon,X,7573232,7573281,7573232,7573233,50,-,CGCTGGCTGACATTACCTGCGCCTCACCGGCTTCATGCAGCTCTTCAGCT,"Exon (Ppp1r3f-205/Ppp1r3f, exon 1 of 4)",20,7557296,7574283,16988,2,Ppp1r3f-205,1002,Foxp3-209;Ppp1r3f-205;Ppp1r3f-201;Ppp1r3f-203,Foxp3;Ppp1r3f;Ppp1r3f;Ppp1r3f,-363;0;0;-389,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,8,54646,ENSMUSG00000039556,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
14317,cg13238100,-0.0000619,0.0000104,-5.921277714,8.47E-09,loss,yes,0.0000183,0.0000178,1.03184299,0.302950007,pos,ns,-0.008457283,0.005200537,-1.626232491,0.104916276,neg,ns,0.979157134,0.000019,0.000178846,0.106116412,0.915558624,pos,ns,0.731975558,Smg6,Smg6_Intron,11,75153048,75153097,75153048,75153049,50,+,CGTGCACAGCTGCCAGGAATCTGACGGGTAAAATCTGGAAAAGTTGGGAG,"Intron (Smg6-201/Smg6, intron 15 of 18)",11,74925823,75164448,238626,1,Smg6-201,227225,Smg6-201;Smg6-202,Smg6;Smg6,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,34,103677,ENSMUSG00000038290,conserved gene but different region,11,75152978,75153073,96,*,96,9,0.635416667,0.931034483,0.09375,0.000000648,CpGisland,TRUE,U5,En-Sd
24927,cg15373360,-0.0000472,0.00000551,-8.57288136,4.87E-16,loss,yes,-0.00000965,0.00000935,-1.031751978,0.302992583,neg,ns,0.012401511,0.002740531,4.525222799,0.00000861,pos,ns,5.065110216,-0.000492916,0.0000942,-5.230064979,0.000000312,neg,yes,0.885475534,Stk35,Stk35_Exon,2,129811014,129811063,129811014,129811015,50,+,CGTCCCTGTTGGTGAGGCGCTGCTAGAAAACCCAAAGATGGAGTTGCACA,"Exon (Stk35-201/Stk35, exon 3 of 4)",2,129800517,129828974,28458,1,Stk35-201,10497,Stk35-201;Stk35-202,Stk35;Stk35,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,67333,ENSMUSG00000037885,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10909,cg16810000,0.00000857,0.0000145,0.59310852,0.553540975,gain,ns,0.0000253,0.0000246,1.031686609,0.303023165,pos,ns,0.007622155,0.007194314,1.059469335,0.290210879,pos,ns,0.537286312,-0.000134365,0.000247412,-0.543082027,0.587463593,neg,ns,0.199910642,Pitx1,Pitx1_threeUTR,13,55825060,55825109,55825060,55825061,50,+,CGCTCGGACTATGGTTTTAATAGACGTACATGGACAAGTCGATATAGACA,3' UTR,13,55825051,55831425,6375,2,Pitx1-201,6316,Pitx1-201;Pitx1-202,Pitx1;Pitx1,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,5,18740,ENSMUSG00000021506,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
3741,cg13634781,0.0000232,0.0000103,2.255951862,0.024770347,gain,ns,0.000018,0.0000175,1.031646917,0.303041736,pos,ns,0.013775493,0.005120388,2.690322093,0.007525198,pos,ns,2.123482079,-0.000299665,0.00017609,-1.701772851,0.089800552,neg,ns,0.136414582,Adgrb3,Adgrb3_fiveUTR,1,25228464,25228513,25228464,25228465,50,-,CGATCACATAAGCATTTCGTATGGGATGCATCGGTAAGCACAGTTTTACA,Promoter (<=1kb),1,25067476,25228826,161351,2,Adgrb3-203,313,Adgrb3-203;Adgrb3-206;Adgrb3-205;Adgrb3-207;Adgrb3-201;Adgrb3-208;Adgrb3-202;Adgrb3-204;Gm15702-201,Adgrb3;Adgrb3;Adgrb3;Adgrb3;Adgrb3;Adgrb3;Adgrb3;Adgrb3;Gm15702,0;0;0;0;0;0;0;0;4734,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,7,25,210933,ENSMUSG00000033569,conserved gene and region,1,25228450,25228780,331,*,331,18,0.486404834,0.950239234,0.054380665,1.76E-09,CpGisland,TRUE,U15,NS
20301,cg04825297,0.0000337,0.00000544,6.190560706,1.90E-09,gain,yes,-0.00000953,0.00000924,-1.031511208,0.303105236,neg,ns,0.007196444,0.00270736,2.658104406,0.008265782,pos,ns,2.082716071,-0.000237076,0.0000931,-2.546303126,0.011370563,neg,ns,0.123391431,Hoxc5,Hoxc5_Exon,15,102991166,102991215,102991214,102991215,50,-,AAATCAAAACTCGTCTCCCAGCCTCATGTTTCCATGGATGAGACCCCACG,"Exon (Hoxc8-201/Hoxc8, exon 1 of 2)",15,102967443,103015676,48234,1,Hoxc5-202,23723,Hoxc5-202;Hoxc8-201;Hoxc8-202,Hoxc5;Hoxc8;Hoxc8,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,72,134,15424,ENSMUSG00000022485,conserved gene and region,15,102990435,102991303,869,*,869,73,0.63406214,0.844205792,0.084004603,1.12E-49,CpGisland,TRUE,U13,Hc-P
22143,cg19796371,-0.0000396,0.00000964,-4.108960648,0.0000509,loss,ns,0.0000169,0.0000164,1.031369591,0.30317151,pos,ns,-0.004268256,0.004796263,-0.889912989,0.37420269,neg,ns,0.426893095,0.0000458,0.000164943,0.277571445,0.781526371,pos,ns,0.162639821,Mn1,Mn1_Promoter,5,111415926,111415975,111415974,111415975,50,+,TTATTATAACGTTTATTTCATTTCAGATTTCATGCGTAATTTAGCAAACG,Promoter (1-2kb),5,111417362,111418073,712,1,Mn1-202,-1387,Mn1-202;Mn1-201,Mn1;Mn1,-1387;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,5,12,433938,ENSMUSG00000070576,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
14453,cg07767456,-0.00000163,0.000000795,-2.051078529,0.041099526,loss,ns,-0.00000139,0.00000135,-1.03126621,0.303219896,neg,ns,-0.000104303,0.0003957,-0.263590651,0.792270488,neg,ns,0.101126521,-0.0000227,0.0000136,-1.669183929,0.096090449,neg,ns,0.013866911,Ywhae,Ywhae_fiveUTR,11,75732877,75732926,75732925,75732926,50,+,AGAGCTGAGCAGTTGTCCGCGTGCGCAGGCGGAAGTCCCGGATTGAGGCG,Promoter (<=1kb),11,75732913,75764623,31711,1,Ywhae-203,0,Ywhae-201;Ywhae-203;Ywhae-204;Ywhae-202,Ywhae;Ywhae;Ywhae;Ywhae,0;0;0;-222,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,9,9,22627,ENSMUSG00000020849,conserved gene and region,11,75732561,75733672,1112,*,1112,119,0.701438849,0.881745794,0.107014389,6.96E-94,CpGisland,TRUE,NA,NRS
12329,cg17318487,-0.0000111,0.00000476,-2.321945916,0.020883547,loss,ns,0.00000834,0.00000809,1.031263482,0.303221173,pos,ns,0.004377406,0.002368934,1.847837994,0.065578236,pos,ns,1.183240267,-0.000149347,0.0000815,-1.833208581,0.067730344,neg,ns,0.890320585,Fign,Fign_Intergenic_downstream,2,63963462,63963511,63963510,63963511,50,-,GGGGTTTGTCATTGATGGATTGCAGTCTGGCGGTGTTCACACTTCTGCCG,Distal Intergenic,2,63980447,64097988,117542,2,Fign-202,134526,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,28,84,60344,ENSMUSG00000075324,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4311,cg07609897,-0.00000155,0.00000316,-0.489397294,0.624906555,loss,ns,0.00000554,0.00000538,1.031244338,0.303230133,pos,ns,0.002039676,0.001574803,1.295194212,0.196216953,pos,ns,0.707263472,-0.0000758,0.0000542,-1.399711172,0.162599732,neg,ns,0.923223797,Glis3,Glis3_Intron,19,28305425,28305474,28305425,28305426,50,-,CGAAAATGGGCTGTTACTAAAATGTCAACACAATTGTCCCTCTTGAAGCT,"Intron (Glis3-209/Glis3, intron 7 of 10)",19,28258851,28680077,421227,2,Glis3-209,374603,Glis3-209;Glis3-204;Glis3-201;Glis3-210;Glis3-207,Glis3;Glis3;Glis3;Glis3;Glis3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,8,226075,ENSMUSG00000052942,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14539,cg08843279,-0.000000641,0.00000288,-0.222366737,0.824174833,loss,ns,0.00000505,0.0000049,1.031199997,0.303250888,pos,ns,0.000364682,0.001434176,0.254279898,0.799447912,pos,ns,0.097209827,-0.0000281,0.0000493,-0.569801846,0.569224786,neg,ns,0.053683309,Nrip1,Nrip1_fiveUTR,16,76373019,76373068,76373067,76373068,50,-,CTCCCGAGTTCGGGGCTCTGCTGCAATGTCTGCGAGGCTGACTTTGAGCG,Promoter (<=1kb),16,76290862,76373049,82188,2,Nrip1-201,0,Nrip1-202;Nrip1-201;Nrip1-208;Nrip1-207;Nrip1-205;Nrip1-203;Nrip1-206,Nrip1;Nrip1;Nrip1;Nrip1;Nrip1;Nrip1;Nrip1,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,8,268903,ENSMUSG00000048490,conserved gene but different region,16,76372209,76373156,948,*,948,139,0.778481013,0.969367938,0.146624473,1.33E-131,CpGisland,TRUE,U1,Pr-A
9049,cg24998454,-0.0000116,0.00000182,-6.363127827,7.10E-10,loss,yes,-0.00000318,0.00000308,-1.030840197,0.30341934,neg,ns,-0.001050387,0.000903417,-1.162682322,0.245852675,neg,ns,0.609325062,-0.0000266,0.0000311,-0.854676846,0.393390087,neg,ns,0.961655997,Nova1,Nova1_Exon,12,46700036,46700085,46700084,46700085,50,+,TATTGAGCAGCCTGTGTTGCAGCTGGTGTTCCAGTAATGGTTACCTTCCG,"Exon (Nova1-201/Nova1, exon 5 of 5)",12,46694517,46818929,124413,2,Nova1-201,118844,Nova1-201;Nova1-204,Nova1;Nova1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,24,664883,ENSMUSG00000021047,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23723,cg21163105,0.0000745,0.0000152,4.909574299,0.00000148,gain,yes,-0.0000266,0.0000258,-1.030827903,0.303425097,neg,ns,0.024000154,0.007555083,3.176689729,0.001639705,pos,ns,2.785234206,-0.000621951,0.000259819,-2.393788799,0.017269546,neg,ns,0.331436224,Rbm19,Rbm19_Intergenic_downstream,5,120229066,120229115,120229114,120229115,50,+,AAAGTCCCATTTTCCATATTTATGGCCCTTATTCAGTTAAATATTAACCG,Distal Intergenic,5,120175725,120197969,22245,1,Rbm19-210,53341,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,12,13,74111,ENSMUSG00000029594,mapped to different genes,5,120229114,120229372,259,*,259,17,0.625482626,0.671496111,0.065637066,3.03E-10,CpGisland,TRUE,NA,NRS
6233,cg25080417,-0.0000706,0.00000956,-7.383750055,1.43E-12,loss,yes,0.0000167,0.0000162,1.030692272,0.303488614,pos,ns,0.01130095,0.004759724,2.374286913,0.018191574,pos,ns,1.740129725,-0.000918995,0.000163687,-5.614361823,4.38E-08,neg,yes,0.584271554,Tshz3,Tshz3_Intergenic_upstream,7,36477125,36477174,36477125,36477126,50,-,CGAGGGGAGCCTGTAATGACTGGATATTGAGAAAGATTCCGAAAGATTAG,Distal Intergenic,7,36698118,36773553,75436,1,Tshz3-201,-220993,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,12,58,243931,ENSMUSG00000021217,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22763,cg09876450,0.0000421,0.0000122,3.441920993,0.000656905,gain,ns,0.0000214,0.0000208,1.030499035,0.303579123,pos,ns,-0.007288327,0.006093342,-1.1961133,0.232566404,neg,ns,0.633453022,0.000410365,0.00020955,1.958318148,0.051089217,pos,ns,0.819081183,Dmbx1,Dmbx1_Intron,4,115931998,115932047,115931998,115931999,50,+,CGGCCGCGTTTCACAAGCTGTCGAATTGTGCTTACATTGGTTAAAAGAAT,"Intron (Dmbx1-203/Dmbx1, intron 1 of 4)",4,115915119,115939926,24808,2,Dmbx1-203,7879,Dmbx1-203;Dmbx1-202,Dmbx1;Dmbx1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,42,140477,ENSMUSG00000028707,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
7320,cg06338197,-0.00000445,0.00000414,-1.073345064,0.283951118,loss,ns,0.00000725,0.00000704,1.030488934,0.303583854,pos,ns,-0.000847176,0.00206229,-0.410793872,0.681507491,neg,ns,0.166529366,-0.000121527,0.0000709,-1.713524711,0.087615748,neg,ns,0.897783845,Crtac1,Crtac1_Exon,19,42287941,42287990,42287941,42287942,50,+,CGGCTCACCATCTTGCCATCTGGCCACGTCACCTCCACACTGCTGGCTTC,Promoter (<=1kb),19,42283532,42287954,4423,2,Crtac1-202,0,Crtac1-203;Crtac1-201;Crtac1-202,Crtac1;Crtac1;Crtac1,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,8,72832,ENSMUSG00000042401,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19680,cg22493172,-0.0000128,0.00000462,-2.77514405,0.005852778,loss,ns,0.00000809,0.00000785,1.030452138,0.303601091,pos,ns,0.001694718,0.002299658,0.736943607,0.461714005,pos,ns,0.335626952,-0.0000881,0.0000791,-1.113804675,0.266225827,neg,ns,0.066303256,Pou6f1,Pou6f1_Promoter,15,100600099,100600148,100600099,100600100,50,-,CGTCATGAGCATAATTTATGCAAAGAGCTTTGCCGCATGCTGCACCGCCC,Promoter (<=1kb),15,100575318,100599984,24667,2,Pou6f1-202,-164,Pou6f1-202;Pou6f1-207;Pou6f1-209,Pou6f1;Pou6f1;Pou6f1,0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,4,19009,ENSMUSG00000009739,conserved gene and region,15,100600099,100600664,566,*,566,35,0.623674912,0.640230108,0.061837456,1.34E-19,CpGisland,TRUE,U3,Pr-B
15767,cg00688975,-0.0000171,0.00000771,-2.218273574,0.027260535,loss,ns,-0.0000135,0.0000131,-1.030397335,0.303626765,neg,ns,-0.007473473,0.003836796,-1.947842422,0.052336215,neg,ns,1.281197693,-0.0000319,0.000131947,-0.241927042,0.808996657,neg,ns,0.801272586,Dpf3,Dpf3_Exon,12,83269520,83269569,83269520,83269521,50,-,CGTGGAAAGTTGACGTGTCACTTTCTGACGTGGAACCGAATAAGTCCTCC,"Exon (Dpf3-203/Dpf3, exon 7 of 7)",12,83213745,83350895,137151,2,Dpf3-204,81326,Dpf3-204;Dpf3-207;Dpf3-202;Dpf3-203;Dpf3-201;Dpf3-206;Dpf3-205,Dpf3;Dpf3;Dpf3;Dpf3;Dpf3;Dpf3;Dpf3,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,16,70127,ENSMUSG00000021221,conserved gene and region,12,83269462,83269588,127,*,127,13,0.582677165,1.205989774,0.102362205,2.30E-10,CpGisland,TRUE,U11,Tr-P
11634,cg13100152,-0.0001257,0.0000134,-9.350516387,1.80E-18,loss,yes,0.0000235,0.0000228,1.030153373,0.303741071,pos,ns,-0.00292372,0.006690788,-0.436976899,0.66243233,neg,ns,0.17885848,-0.0000517,0.000230096,-0.224536249,0.822487987,neg,ns,0.6718341,Ptbp3,Ptbp3_Exon,4,59546157,59546206,59546157,59546158,50,+,CGACTGTTATAAGATCTGTAACAACACTGTATGGAAAAAGTAAAAAGAGA,"Exon (Ptbp3-212/Ptbp3, exon 2 of 15)",4,59471868,59549364,77497,2,Ptbp3-201,3158,1700018M17Rik-201;Ptbp3-201;Ptbp3-212;Ptbp3-202;Ptbp3-210;Ptbp3-208;Ptbp3-205;Ptbp3-213;Ptbp3-203;Ptbp3-211;Ptbp3-204,1700018M17Rik;Ptbp3;Ptbp3;Ptbp3;Ptbp3;Ptbp3;Ptbp3;Ptbp3;Ptbp3;Ptbp3;Ptbp3,-2948;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,5,230257,ENSMUSG00000028382,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
14135,cg11646597,0.00000285,0.00000127,2.23898091,0.025866355,gain,ns,0.00000223,0.00000216,1.03006347,0.303783201,pos,ns,0.000329865,0.000633411,0.5207764,0.602894314,pos,ns,0.219758812,0.0000318,0.0000218,1.458832999,0.14562354,pos,ns,0.045586039,Hoxd10,Hoxd10_Exon,2,74694231,74694280,74694231,74694232,50,+,CGCCTAGAGATCAGTAAGAGCGTTAACCTCACCGACAGGCAGGTCAAGAT,"Exon (Hoxd10-201/Hoxd10, exon 2 of 2)",2,74691924,74695105,3182,1,Hoxd10-201,2307,Hoxd10-201;Hoxd9-201,Hoxd10;Hoxd9,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,21,24,15430,ENSMUSG00000050368,conserved gene and region,2,74694222,74694348,127,*,127,12,0.519685039,1.400735294,0.094488189,3.59E-09,CpGisland,TRUE,U13,Hc-P
13203,cg13418645,0.0000208,0.00000593,3.514527543,0.000506192,gain,ns,0.0000104,0.0000101,1.030011447,0.303807582,pos,ns,0.01170632,0.002948934,3.969678099,0.0000895,pos,ns,4.048179274,-0.000312717,0.000101414,-3.083576669,0.002229269,neg,ns,0.126517981,Foxb1,Foxb1_Intergenic_downstream,9,69754583,69754632,69754583,69754584,50,-,CGAGTGAATGAGAGTGAATGAAGTGGCCGGGACCCTTCATTTGATCTACT,Distal Intergenic,9,69757710,69760940,3231,2,Foxb1-201,6357,Foxb1-201,Foxb1,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,21,64290,ENSMUSG00000059246,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
6364,cg19958090,-0.00000505,0.00000216,-2.340076981,0.019913947,loss,ns,0.00000378,0.00000367,1.029998279,0.303813753,pos,ns,0.00091856,0.001074893,0.854559406,0.393455022,pos,ns,0.405104907,-0.0000142,0.000037,-0.384160245,0.701123054,neg,ns,0.947025694,4932438A13Rik,4932438A13Rik_Exon,3,37012637,37012686,37012685,37012686,50,-,GTCTAGCCAGTCCCATTTGAAAGCATGCAGAGCACACTCATGGGGAAACG,"Exon (4932438A13Rik-215/4932438A13Rik, exon 5 of 31)",3,36863106,37053033,189928,1,4932438A13Rik-201,149531,4932438A13Rik-201;4932438A13Rik-217;4932438A13Rik-215;4932438A13Rik-213;4932438A13Rik-210;4932438A13Rik-209,4932438A13Rik;4932438A13Rik;4932438A13Rik;4932438A13Rik;4932438A13Rik;4932438A13Rik,0;0;0;0;0;-1818,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,229227,ENSMUSG00000037270,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16197,cg26879409,-0.0000238,0.00000754,-3.163500492,0.001713379,loss,ns,0.0000132,0.0000128,1.029799701,0.303906831,pos,ns,-0.007857291,0.003751825,-2.094258758,0.037048683,neg,ns,1.43122723,0.0000305,0.000129025,0.236712647,0.813036061,pos,ns,0.806937065,Cacna1a,Cacna1a_Exon,8,84579522,84579571,84579522,84579523,50,-,CGGGTGCTACGACCTCTTAAAACCATCAAGCGGCTGCCAAAGCTCAAGGT,"Exon (Cacna1a-213/Cacna1a, exon 27 of 49)",8,84338639,84640246,301608,1,Cacna1a-213,240883,Cacna1a-213;Cacna1a-201;Cacna1a-202;Cacna1a-211;Cacna1a-203,Cacna1a;Cacna1a;Cacna1a;Cacna1a;Cacna1a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,12,12286,ENSMUSG00000034656,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11454,cg24225191,0.00000637,0.00000256,2.48571552,0.013455854,gain,ns,-0.00000448,0.00000435,-1.029567952,0.304015481,neg,ns,-0.000237167,0.001275509,-0.185939065,0.852614155,neg,ns,0.069247462,0.0000536,0.0000439,1.221084801,0.222981795,pos,ns,0.906799473,Hnrnpk,Hnrnpk_threeUTR,13,58396170,58396219,58396218,58396219,50,-,AATGGCACTATGACATACATTTAAGCATTCCACAGCATCAGATTCGAGCG,3' UTR,13,58391142,58403343,12202,2,Hnrnpk-202,7124,Hnrnpk-202;Hnrnpk-224;Hnrnpk-221;Hnrnpk-232;Hnrnpk-216;Hnrnpk-201;Hnrnpk-205;Hnrnpk-217;Hnrnpk-206;Hnrnpk-209;Hnrnpk-213;Hnrnpk-227;Hnrnpk-234;Hnrnpk-233;Hnrnpk-228;Hnrnpk-214;Hnrnpk-215;Hnrnpk-211;Hnrnpk-208;Hnrnpk-212;Hnrnpk-231;Hnrnpk-230;Hnrnpk-203;Hnrnpk-218;Hnrnpk-226;Hnrnpk-207;Hnrnpk-219;Hnrnpk-225;Hnrnpk-229;Hnrnpk-223;Hnrnpk-220;Hnrnpk-210;Hnrnpk-204;Hnrnpk-222,Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk,0;0;0;0;0;0;0;-2302;-1385;-2195;-972;-2086;-2281;-2000;-1474;0;-450;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;6283;5836,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,19,15387,ENSMUSG00000021546,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15587,cg00525251,-0.00000256,0.00000384,-0.666249855,0.505746911,loss,ns,0.00000671,0.00000652,1.029519169,0.304038355,pos,ns,0.001131053,0.001909135,0.592442723,0.553986044,pos,ns,0.256501176,-0.00000664,0.0000657,-0.101121779,0.91951916,neg,ns,0.923427549,Gm11411,Gm11411_Intergenic_downstream,4,81961146,81961195,81961194,81961195,50,-,ATGGCATTACAATGGATTAGTGATCAAGTACGATTAATCCTAATAGATCG,Distal Intergenic,4,81696441,81697159,719,1,Gm11411-201,264754,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,6,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8629,cg20830232,-0.0000411,0.00000694,-5.921892529,8.44E-09,loss,yes,0.0000121,0.0000118,1.029246108,0.304166413,pos,ns,-0.002646864,0.003454477,-0.766212506,0.444132909,neg,ns,0.352487046,0.0000634,0.000118799,0.533707224,0.593926578,pos,ns,0.897503654,Btrc,Btrc_Intron,19,45474629,45474678,45474677,45474678,50,-,TTAAATTCAGATTATGCTGAAGCAAAATGGTCCTGGTATGAGAAGCAACG,"Intron (Btrc-204/Btrc, intron 1 of 2)",19,45363734,45507736,144003,1,Btrc-204,110895,Btrc-204;Btrc-201;Btrc-210;Btrc-202;Btrc-203;Btrc-209,Btrc;Btrc;Btrc;Btrc;Btrc;Btrc,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,63,98,12234,ENSMUSG00000025217,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8093,cg22389732,0.0000606,0.0000122,4.973862122,0.00000109,gain,yes,0.0000213,0.0000207,1.029223164,0.304177174,pos,ns,0.020769971,0.006059421,3.427715583,0.000690916,pos,ns,3.160574512,-0.000368175,0.000208383,-1.766820466,0.078242273,neg,ns,0.600925341,Ebf1,Ebf1_Intron,11,44739838,44739887,44739886,44739887,50,+,GGCTGCATTAGTGCCGGGAAAAATCAATACCGATTTATAATTTACCATCG,"Intron (Ebf1-203/Ebf1, intron 6 of 15)",11,44617317,45004995,387679,1,Ebf1-203,122521,Ebf1-203;Ebf1-202;Ebf1-201,Ebf1;Ebf1;Ebf1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,80,13591,ENSMUSG00000057098,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6437,cg16736307,0.0000935,0.00000853,10.96608065,7.29E-24,gain,yes,-0.0000149,0.0000145,-1.029184559,0.304195282,neg,ns,0.006851268,0.00424299,1.614726419,0.107387272,pos,ns,0.96904719,-0.000110052,0.000145916,-0.754217192,0.451291335,neg,ns,0.144011355,Tenm2,Tenm2_Exon,11,37235895,37235944,37235943,37235944,50,+,CCTAGAGTCTTCGGTCCCAGCTCGCTTTGGAGCAAAATTCCTTCACTTCG,Promoter (<=1kb),11,36944205,37235964,291760,2,Tenm2-207,20,Tenm2-202;Tenm2-207,Tenm2;Tenm2,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,21,84,23964,ENSMUSG00000049336,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4413,cg26739848,-0.00000179,0.00000132,-1.356474083,0.175935432,loss,ns,0.0000023,0.00000224,1.029120258,0.304225445,pos,ns,0.0000292,0.000655858,0.044517845,0.96452029,pos,ns,0.015688632,-0.0000133,0.0000226,-0.588369536,0.556712695,neg,ns,0.964309146,Lrrc4,Lrrc4_Exon,6,28829805,28829854,28829853,28829854,50,-,TATGGTCATGAATTGTGGGCAGCACTACTGCCCCCTCACCTGATACACCG,Promoter (<=1kb),6,28661831,28830345,168515,2,Lrrc4-202,491,Lrrc4-202;Lrrc4-201;Snd1-203;Snd1-201;Snd1-206;Snd1-210;Snd1-209,Lrrc4;Lrrc4;Snd1;Snd1;Snd1;Snd1;Snd1,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,6,192198,ENSMUSG00000049939,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3631,cg24654889,0.0000382,0.0000106,3.608216602,0.000359302,gain,ns,-0.0000185,0.000018,-1.029022236,0.304271429,neg,ns,0.007769416,0.005270641,1.474093275,0.141471228,pos,ns,0.849331876,-0.000036,0.000181257,-0.198370217,0.842885444,neg,ns,0.671182214,Gm47909,Gm47909_Intergenic_downstream,14,24837753,24837802,24837753,24837754,50,-,CGGTTTGAATACTTTTCTGACAAGGTTCCTATTTGTAGATTCACAAGTAG,Distal Intergenic,14,25089939,25090406,468,2,Gm47909-201,252653,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,13,17,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26871,cg22918336,0.0000374,0.00000746,5.014968113,0.000000894,gain,yes,-0.000013,0.0000127,-1.028880955,0.304337715,neg,ns,-0.002116332,0.003715128,-0.569652581,0.569325915,neg,ns,0.244639047,-0.0000907,0.000127763,-0.710288746,0.478059079,neg,ns,0.695209065,Rgs8,Rgs8_fiveUTR,1,153665617,153665666,153665617,153665618,50,+,CGCCCGCTGGGTGTAGGCTGCTTCAGTATTTACTGGATGTGACAAGCAGA,Promoter (<=1kb),1,153665657,153691055,25399,1,Rgs8-207,0,Rgs8-201;Rgs8-206;Rgs8-205;Rgs8-210;Rgs8-203;Rgs8-208;Rgs8-207;Rgs8-204;Rgs8-202;Rgs8-209,Rgs8;Rgs8;Rgs8;Rgs8;Rgs8;Rgs8;Rgs8;Rgs8;Rgs8;Rgs8,0;0;0;0;0;0;0;-7;-43;-1823,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,1,67792,ENSMUSG00000042671,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11210,cg01458681,-0.00000325,0.0000022,-1.475193315,0.141175477,loss,ns,0.00000385,0.00000374,1.028864187,0.304345583,pos,ns,0.000539557,0.001095314,0.492604855,0.622640524,pos,ns,0.205762617,-0.0000389,0.0000377,-1.031503798,0.303108703,neg,ns,0.954814474,Brs3,Brs3_Exon,X,57043355,57043404,57043355,57043356,50,+,CGGGGACAACTCTCCAGGAATAGAAGCATTGTGTGCCATCTATATTACTT,Promoter (<=1kb),20,57043074,57048758,5685,1,Brs3-201,281,Brs3-201,Brs3,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,12209,ENSMUSG00000031130,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3997,cg14175847,-0.00000372,0.00000308,-1.207231004,0.228263509,loss,ns,0.00000539,0.00000524,1.028837405,0.30435815,pos,ns,0.00283515,0.00153529,1.846654759,0.065750168,pos,ns,1.18210313,-0.000119537,0.0000528,-2.264032426,0.024262852,neg,ns,0.929693674,L3mbtl3,L3mbtl3_Exon,10,26344187,26344236,26344235,26344236,50,+,TCCAGGTGGAGATGTCCAGTAGGCAGGTGGAAATACGGGCCTGGAGCTCG,"Exon (L3mbtl3-201/L3mbtl3, exon 4 of 22)",10,26274468,26373956,99489,2,L3mbtl3-202,29720,L3mbtl3-202;L3mbtl3-201;L3mbtl3-203;L3mbtl3-204,L3mbtl3;L3mbtl3;L3mbtl3;L3mbtl3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,6,237339,ENSMUSG00000039089,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10404,cg05698815,-0.0000405,0.0000195,-2.078676406,0.03846927,loss,ns,0.000034,0.0000331,1.028549276,0.30449337,pos,ns,0.059872965,0.009690028,6.17882254,2.03E-09,pos,ns,8.69286132,-0.002073256,0.000333239,-6.221522542,1.59E-09,neg,yes,0.50991743,Snx24,Snx24_Intron,18,53361973,53362022,53361973,53361974,50,-,CGGCCCGAAGCAGATGGCATTCAGCTGCTATTGATTTGCTTCCATAGTTA,"Intron (Snx24-202/Snx24, intron 3 of 6)",18,53245662,53390920,145259,1,Snx24-202,116311,Snx24-202;Snx24-201,Snx24;Snx24,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,7,69226,ENSMUSG00000024535,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
475,cg00022035,0.00000363,0.00000135,2.679163884,0.007774635,gain,ns,-0.00000237,0.0000023,-1.028489399,0.304521475,neg,ns,0.000862667,0.000673764,1.280368923,0.20137261,pos,ns,0.695999602,0.00000171,0.0000232,0.073868832,0.941162398,pos,ns,0.960912693,Ogdh,Ogdh_Exon,11,6316995,6317044,6317043,6317044,50,-,AGCACAGCTGGACCCCCTGGGGATTTTGGATGCTGATCTGGACTCCTCCG,"Exon (Ogdh-201/Ogdh, exon 4 of 23)",11,6291633,6356642,65010,1,Ogdh-201,25362,Ogdh-201;Ogdh-204;Ogdh-203;Ogdh-207;Ogdh-206;Ogdh-202,Ogdh;Ogdh;Ogdh;Ogdh;Ogdh;Ogdh,0;0;0;25010;24823;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,18293,ENSMUSG00000020456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4194,cg14003831,-0.0000146,0.00000446,-3.276863689,0.001168761,loss,ns,0.0000078,0.00000758,1.028414581,0.304556596,pos,ns,-0.001546873,0.002221754,-0.696239409,0.48680059,neg,ns,0.312648904,-0.0000773,0.0000764,-1.01218536,0.312238795,neg,ns,0.92813485,Grm4,Grm4_threeUTR,17,27435300,27435349,27435348,27435349,50,-,TCTTACAGGTGTAGCGGTCCACCTGGTACTGGTACCCTGTGCAAGGCTCG,3' UTR,17,27422387,27503304,80918,2,Grm4-202,67955,Grm4-202;Grm4-201;Grm4-206;Grm4-207;Grm4-205;Grm4-208,Grm4;Grm4;Grm4;Grm4;Grm4;Grm4,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,5,268934,ENSMUSG00000063239,conserved gene and region,17,27435262,27435462,201,*,201,12,0.661691542,0.545454546,0.059701493,0.000000616,CpGisland,TRUE,U15,NS
17877,cg24265399,-0.00000466,0.00000596,-0.781141469,0.435315415,loss,ns,-0.0000104,0.0000101,-1.02830457,0.304608242,neg,ns,-0.005912236,0.002968497,-1.991659977,0.047285524,neg,ns,1.32527179,-0.0000323,0.000102086,-0.316615127,0.751748755,neg,ns,0.809730815,Dlg2,Dlg2_Exon,7,92286516,92286565,92286564,92286565,50,+,CCATGACCTACGAGAGCAGATGATGAACCACAGCATGAGCTCCGGGTCCG,"Exon (Dlg2-217/Dlg2, exon 19 of 28)",7,90477231,92449247,1972017,1,Dlg2-217,1809285,Dlg2-217;Dlg2-204;Dlg2-209;Dlg2-201;Dlg2-220;Dlg2-218;Dlg2-219;Dlg2-203;Dlg2-202;Dlg2-206;Dlg2-212;Dlg2-208;Dlg2-207;Dlg2-214,Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,21,23859,ENSMUSG00000052572,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
553,cg22044758,0.00005,0.0000113,4.425629681,0.0000133,gain,ns,0.0000197,0.0000192,1.028270832,0.304624082,pos,ns,-0.008284702,0.005618862,-1.474444648,0.141376708,neg,ns,0.849622136,0.000209372,0.000193232,1.083524596,0.279417652,pos,ns,0.361402028,Dlx6,Dlx6_Exon,6,6869472,6869521,6869472,6869473,50,+,CGTAGCTCCCCAGGATCAATTCTGAACAAAGCCTCCAGCTGCAGTGCCAT,"Exon (Dlx6os1-201/Dlx6os1-201, exon 2 of 3)",6,6863798,6865430,1633,1,Dlx6-204,5674,Dlx6-203;Dlx6-202;Dlx6-201;Dlx6-204,Dlx6;Dlx6;Dlx6;Dlx6,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,36,13396,ENSMUSG00000029754,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
18926,cg01951460,-0.0000125,0.00000433,-2.89408004,0.004072376,loss,ns,0.00000756,0.00000736,1.028169287,0.304671761,pos,ns,0.001131932,0.002154782,0.525311799,0.59974197,pos,ns,0.222035558,-0.000102891,0.0000741,-1.388492343,0.16598404,neg,ns,0.884544102,Mitf,Mitf_Intron,6,97950653,97950702,97950653,97950654,50,+,CGCCGCTAAGTAATTCATCAAGGAATGTTGGTAATTAGTCCTGCCTCTTT,"Intron (Mitf-207/Mitf, intron 2 of 9)",6,97807052,98018593,211542,1,Mitf-207,143601,Mitf-207;Mitf-202;Mitf-203;Mitf-204,Mitf;Mitf;Mitf;Mitf,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,16,17342,ENSMUSG00000035158,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15698,cg10000978,-0.00000173,0.0000012,-1.443216393,0.149969238,loss,ns,0.00000209,0.00000203,1.02794461,0.304777272,pos,ns,0.001421271,0.000595739,2.385729731,0.017645456,pos,ns,1.753367126,-0.0000548,0.0000205,-2.676703057,0.007830638,neg,ns,0.967538951,Phip,Phip_threeUTR,9,82871219,82871268,82871267,82871268,50,+,ACAAGTTACCAACCAATTAAATTAGCTTTTGCTTTTTCAGTCAACTTTCG,3' UTR,9,82866159,82975516,109358,2,Phip-201,104248,Phip-201;Phip-213,Phip;Phip,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,13,83946,ENSMUSG00000032253,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18458,cg12280192,-0.0000002,0.00000163,-0.123215327,0.902016435,loss,ns,0.00000284,0.00000276,1.027896421,0.304799905,pos,ns,-0.000212831,0.000809531,-0.262905951,0.792797712,neg,ns,0.100837612,0.0000136,0.0000278,0.487403151,0.626317148,pos,ns,0.981059329,Cnot1,Cnot1_Exon,8,95775328,95775377,95775376,95775377,50,+,TGCGAAAATAGGCAGCGTAATAAATGCCTGTCTGCCTCAGGACCGTGCCG,"Exon (Cnot1-202/Cnot1, exon 3 of 49)",8,95719451,95807462,88012,2,Cnot1-202,32085,Cnot1-202;Cnot1-201;Cnot1-203;Cnot1-216;Cnot1-217;Cnot1-207;Cnot1-209,Cnot1;Cnot1;Cnot1;Cnot1;Cnot1;Cnot1;Cnot1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,24,234594,ENSMUSG00000036550,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8799,cg01761301,-0.00000066,0.000000779,-0.847570632,0.397331033,loss,ns,0.00000136,0.00000132,1.027806425,0.304842177,pos,ns,0.0000545,0.000387546,0.140602159,0.888275557,pos,ns,0.051452288,-0.0000095,0.0000133,-0.713105046,0.476317207,neg,ns,0.970767971,Oga,Oga_fiveUTR,19,45762243,45762292,45762291,45762292,50,-,AATTGTGCTGAAGAATGACTACGACACCCTGTTGAGATCAGATCCAAGCG,5' UTR,19,45750259,45783551,33293,2,Oga-201,21259,Oga-201;Oga-204;Oga-203;Oga-206,Oga;Oga;Oga;Oga,0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,21,76055,ENSMUSG00000025220,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
941,cg19626252,0.0000529,0.00000454,11.66523715,2.59E-26,gain,yes,-0.00000792,0.00000771,-1.027639645,0.304920526,neg,ns,0.007561387,0.002258343,3.348201721,0.00091367,pos,ns,3.039210493,-0.000111438,0.0000777,-1.43486755,0.152332922,neg,ns,0.166644745,Gata3,Gata3_Promoter,2,9896004,9896053,9896052,9896053,50,-,CAATCATTGGAACAAATAGCTAACATTTAACGTTTACACCCGCACTGGCG,Promoter (6-7kb),2,9874702,9890034,15333,2,Gata3-202,-6019,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,12,21,14462,ENSMUSG00000015619,conserved gene and region,2,9895897,9896117,221,*,221,15,0.538461539,0.979609929,0.067873303,2.65E-09,CpGisland,TRUE,U13,Hc-P
13046,cg27394581,-0.00000365,0.00000189,-1.93318209,0.054124191,loss,ns,0.00000329,0.0000032,1.02762595,0.30492696,pos,ns,-0.001687492,0.000938931,-1.797248243,0.073269389,neg,ns,1.135077427,0.0000347,0.0000323,1.073178947,0.284025511,pos,ns,0.958252959,Chd3,Chd3_Exon,11,69345493,69345542,69345541,69345542,50,+,CCCTTGCTGGCCAGCCGGCTGAGGATGCTGCGCTCGGACATCTGAAGGCG,Promoter (<=1kb),11,69343273,69346019,2747,2,Chd3-205,477,Chd3-205;Chd3-203;Chd3-202;Chd3-211;Chd3-201;Chd3-204;Chd3-208;Rnf227-201;Rnf227-203;Rnf227-202,Chd3;Chd3;Chd3;Chd3;Chd3;Chd3;Chd3;Rnf227;Rnf227;Rnf227,0;0;0;0;0;0;0;5032;4722;4684,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,22,26,216848,ENSMUSG00000018474,conserved gene but different region,11,69345353,69345644,292,*,292,17,0.609589041,0.656613757,0.058219178,1.94E-09,CpGisland,TRUE,U10,Tr-S
21526,cg23873921,-0.00000498,0.00000762,-0.652927339,0.514287041,loss,ns,0.0000133,0.000013,1.027547113,0.304964,pos,ns,0.014787586,0.003794434,3.89717801,0.000119291,pos,ns,3.923392307,-0.000506348,0.00013049,-3.880351034,0.00012744,neg,ns,0.885154253,Mtf2,Mtf2_threeUTR,5,108107479,108107528,108107527,108107528,50,+,AAAAAATATATTGAGCCTGTAAATTGCTCTGTGACTAGACTTCATTGTCG,3' UTR,5,108065716,108107624,41909,1,Mtf2-209,41763,Mtf2-206;Mtf2-203;Mtf2-209;Mtf2-205;Mtf2-207;Mtf2-210;Mtf2-201;Mtf2-202;Mtf2-215;Mtf2-204;Tmed5-204,Mtf2;Mtf2;Mtf2;Mtf2;Mtf2;Mtf2;Mtf2;Mtf2;Mtf2;Mtf2;Tmed5,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,7,17765,ENSMUSG00000029267,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19566,cg13777117,0.0000353,0.00000568,6.226154903,1.55E-09,gain,yes,0.00000991,0.00000964,1.027507765,0.304982489,pos,ns,-0.000300805,0.002824932,-0.106482282,0.915268586,neg,ns,0.038451443,0.000231326,0.0000971,2.381139164,0.017862786,pos,ns,0.099047987,Sox14,Sox14_Intergenic_downstream,9,99869286,99869335,99869286,99869287,50,+,CGGAGCAGAATCCGGAATGTGAACTTCTCCCGACATATGTTTCCCGCAGA,Distal Intergenic,9,99874220,99875655,1436,2,Sox14-202,6320,Sox14-201;Sox14-202,Sox14;Sox14,0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,12,18,20669,ENSMUSG00000053747,mapped to different genes,9,99869255,99869839,585,*,585,42,0.608547009,0.785385501,0.071794872,5.36E-26,CpGisland,TRUE,U3,Pr-B
14138,cg10861899,0.0000471,0.00000384,12.27769222,1.66E-28,gain,yes,0.0000067,0.00000652,1.027479296,0.304995866,pos,ns,0.008343864,0.001910583,4.367182432,0.0000172,pos,ns,4.764990071,-0.0000717,0.0000657,-1.091083934,0.276083254,neg,ns,0.12822874,Hoxd10,Hoxd10_Exon,2,74694246,74694295,74694294,74694295,50,-,AAGAGCGTTAACCTCACCGACAGGCAGGTCAAGATTTGGTTTCAAAACCG,"Exon (Hoxd10-201/Hoxd10, exon 2 of 2)",2,74691924,74695105,3182,1,Hoxd10-201,2322,Hoxd10-201;Hoxd9-201,Hoxd10;Hoxd9,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,21,24,15430,ENSMUSG00000050368,conserved gene and region,2,74694222,74694348,127,*,127,12,0.519685039,1.400735294,0.094488189,3.59E-09,CpGisland,TRUE,U13,Hc-P
26843,cg16444622,-0.00000168,0.00000433,-0.387170286,0.69889581,loss,ns,-0.00000755,0.00000735,-1.02744704,0.305011023,neg,ns,-0.005651036,0.002153637,-2.623949843,0.009121852,neg,ns,2.039916969,0.0000737,0.0000741,0.994698937,0.32065849,pos,ns,0.869883477,Ajap1,Ajap1_threeUTR,4,153373959,153374008,153373959,153373960,50,-,CGGGTCAGTACATGGCACATAATGGTATTATTGGCACAGGTTCAGAATCG,3' UTR,4,153373221,153482811,109591,2,Ajap1-201,108803,Ajap1-201;Ajap1-202,Ajap1;Ajap1,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,3,230959,ENSMUSG00000039546,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24585,cg06244551,-0.00000259,0.00000188,-1.379798958,0.168642921,loss,ns,0.00000328,0.00000319,1.027431419,0.305018363,pos,ns,0.002256856,0.000935844,2.411573248,0.01646488,pos,ns,1.783441423,-0.0000639,0.0000322,-1.986849323,0.047819103,neg,ns,0.947603469,Sfpq,Sfpq_Intron,4,127029688,127029737,127029736,127029737,50,+,TTCTATGTTCCCGGTACCTGTGGATCGACTCATTGGTGATTGTATCGACG,"Intron (Sfpq-201/Sfpq, intron 9 of 9)",4,127021324,127031236,9913,1,Sfpq-201,8364,Sfpq-201;Sfpq-203;Sfpq-206;Sfpq-205;Sfpq-204;Sfpq-202,Sfpq;Sfpq;Sfpq;Sfpq;Sfpq;Sfpq,0;6305;0;3764;3732;3243,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,12,71514,ENSMUSG00000028820,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4698,cg18715875,0.0000563,0.000012,4.680220717,0.00000429,gain,ns,-0.000021,0.0000204,-1.027417806,0.30502476,neg,ns,0.018607908,0.005985265,3.108952964,0.002051736,pos,ns,2.687878602,-0.000688262,0.000205833,-3.343791974,0.000927798,neg,ns,0.163732272,Gm19640,Gm19640_Intergenic_upstream,9,30140375,30140424,30140423,30140424,50,+,CCCAAAAGGGTTGGAAATCTCTGAGTATTTATCCCCTTGAAGATTCCCCG,Distal Intergenic,9,30063256,30063719,464,2,Gm19640-201,-76656,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,4,100503335,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24181,cg10383996,-0.00000627,0.00000532,-1.17928389,0.239189421,loss,ns,-0.00000928,0.00000903,-1.027396278,0.305034877,neg,ns,-0.002214512,0.002646778,-0.836682174,0.403415738,neg,ns,0.394247163,-0.00000961,0.000091,-0.105567649,0.915993669,neg,ns,0.88459949,Usp15,Usp15_Exon,10,123181735,123181784,123181783,123181784,50,-,TTGTCCCAACTGTCAAAGCCAACATATTTTTTCCACTGTTTGAACCAGCG,"Exon (Usp15-211/Usp15, exon 2 of 22)",10,123105006,123196995,91990,2,Usp15-211,15211,Gm47726-201;Usp15-211;Usp15-201;Usp15-209;Usp15-204;Usp15-202;Usp15-210;Usp15-205;Usp15-207,Gm47726;Usp15;Usp15;Usp15;Usp15;Usp15;Usp15;Usp15;Usp15,-3051;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,14479,ENSMUSG00000020124,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4126,cg04101484,-0.00000285,0.0000094,-0.30362902,0.761614222,loss,ns,0.0000164,0.000016,1.027372146,0.305046217,pos,ns,0.002940544,0.004678547,0.628516534,0.530128418,pos,ns,0.275618914,-0.000305184,0.000160895,-1.896794017,0.05878449,neg,ns,0.876632128,Gm12073,Gm12073_Intergenic_upstream,11,26926339,26926388,26926339,26926340,50,-,CGAGGAATGCTGTGATTCACAGTCATTATTGTAAGGAGGCTGTTATGTAT,Distal Intergenic,11,26856387,26856910,524,2,Gm12073-201,-69478,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,4,100416537,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24454,cg15883101,-0.0000108,0.0000119,-0.913010019,0.361946778,loss,ns,-0.0000207,0.0000202,-1.027371731,0.305046412,neg,ns,-0.00806068,0.005906342,-1.364749853,0.173321436,neg,ns,0.761147721,0.0001652,0.000203119,0.813315439,0.416661444,pos,ns,0.770024803,Ago3,Ago3_Exon,4,126371730,126371779,126371778,126371779,50,+,TTTTCTTACGTTTGATGACTGGCAGGCCTCCTTGTTACATTACAAACACG,"Exon (Ago3-201/Ago3, exon 7 of 19)",4,126332732,126429556,96825,2,Ago3-201,57777,Ago3-201;Ago3-205,Ago3;Ago3,0;32515,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,8,214150,ENSMUSG00000028842,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21223,cg00439253,-0.00000135,0.00000414,-0.325669031,0.744894489,loss,ns,0.00000723,0.00000704,1.027306767,0.305076943,pos,ns,0.003515817,0.002061674,1.705321161,0.089136284,pos,ns,1.049945474,-0.000138774,0.0000709,-1.957301349,0.051209148,neg,ns,0.891305129,Smurf2,Smurf2_threeUTR,11,106846082,106846131,106846082,106846083,50,-,CGGATCTCCCATCCAGGAGGCAATGGACCAAGCTCTTCACAATTGATGTT,3' UTR,11,106820066,106920715,100650,2,Smurf2-202,74584,Smurf2-202;Smurf2-204;Smurf2-201;Smurf2-206,Smurf2;Smurf2;Smurf2;Smurf2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,4,66313,ENSMUSG00000018363,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25178,cg27728043,-0.00000323,0.00000245,-1.316890704,0.188847913,loss,ns,0.00000428,0.00000416,1.027280338,0.305089364,pos,ns,-0.000670218,0.001219208,-0.549715863,0.582910082,neg,ns,0.234398433,-0.00000537,0.0000419,-0.128145214,0.898117145,neg,ns,0.931159704,Gm10051,Gm10051_Intergenic_downstream,5,133479301,133479350,133479301,133479302,50,-,CGACAGGCTGTTATTTTGCTGCCTGAATTGTGTCAGGGAAGTGTAAATAT,Distal Intergenic,5,133475123,133475536,414,1,Gm10051-201,4227,Gm10051-201,Gm10051,4178,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,3,100039731,ENSMUSG00000058905,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
739,cg19337574,-0.000000567,0.000000605,-0.936476431,0.349756907,loss,ns,-0.00000106,0.00000103,-1.027277223,0.305090828,neg,ns,0.000147977,0.000301147,0.491379248,0.62350595,pos,ns,0.205159397,-0.0000139,0.0000104,-1.344891851,0.179643261,neg,ns,0.015836454,Nipbl,Nipbl_Promoter,15,8443772,8443821,8443772,8443773,50,+,CGGAGCTCTCCTAATCCCCGAGCTCAAGTAGATTCCGCTGGCCCGCGGCC,Promoter (<=1kb),15,8290617,8444463,153847,2,Nipbl-201,642,Nipbl-201,Nipbl,0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,5,36,71175,ENSMUSG00000022141,conserved gene and region,15,8443623,8444317,695,*,695,79,0.676258993,0.994277539,0.113669065,7.45E-65,CpGisland,TRUE,U1,Pr-A
27775,cg17906259,0.0000562,0.000015,3.741883672,0.000217594,gain,ns,0.0000262,0.0000255,1.027192923,0.305130449,pos,ns,0.009499309,0.007471245,1.271449265,0.204521975,pos,ns,0.689260023,-0.0000582,0.000256936,-0.226633047,0.820858462,neg,ns,0.402051559,Rrp15,Rrp15_Intergenic_upstream,1,186842929,186842978,186842929,186842930,50,-,CGGTGAAGAATCACAGCCTCAGCAAGGTGCTGAGCCCAGCAACATATCAT,Distal Intergenic,1,186720978,186749358,28381,2,Rrp15-201,-93620,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,11,67223,ENSMUSG00000001305,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2725,cg17425418,-0.00000669,0.00000202,-3.311875181,0.001036272,loss,ns,0.00000352,0.00000343,1.027157064,0.305147304,pos,ns,0.000829241,0.001004735,0.825332726,0.409817379,pos,ns,0.387409629,0.0000114,0.0000346,0.329434843,0.742049508,pos,ns,0.95105882,Kat6b,Kat6b_Exon,14,21625068,21625117,21625116,21625117,50,+,GGGCTCATTGATGGCCTTACTAAGTTTTTTACACCATCACCTGATGGTCG,"Exon (Kat6b-201/Kat6b, exon 7 of 17)",14,21499770,21672071,172302,1,Kat6b-206,125298,Kat6b-211;Kat6b-206;Kat6b-204;Kat6b-201;Kat6b-202;Kat6b-208;Kat6b-210;Kat6b-203;Kat6b-214;Kat6b-205;Kat6b-213,Kat6b;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,21,54169,ENSMUSG00000021767,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14035,cg08029023,-0.00000376,0.00000375,-1.003516444,0.316394404,loss,ns,-0.00000654,0.00000637,-1.027091568,0.305178091,neg,ns,-0.00075715,0.001866705,-0.40560756,0.685310771,neg,ns,0.164112442,-0.000105066,0.0000642,-1.636646709,0.102719062,neg,ns,0.919648243,Pnkd,Pnkd_threeUTR,1,74353579,74353628,74353627,74353628,50,+,TGAATCCTTAAGGGCATGGACTGTATCTTATGCATCTCTGTATTTCTGCG,3' UTR,1,74285045,74353684,68640,1,Pnkd-201,68534,Pnkd-201;Pnkd-203;Pnkd-202,Pnkd;Pnkd;Pnkd,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,2,56695,ENSMUSG00000026179,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5919,cg04499301,0.0000669,0.00000888,7.542074326,5.16E-13,gain,yes,0.0000155,0.0000151,1.027033483,0.305205396,pos,ns,-0.008165478,0.004417577,-1.848406455,0.065495768,neg,ns,1.183786762,0.000444802,0.00015192,2.927871153,0.003665627,pos,ns,0.652433516,Adcy5,Adcy5_Exon,16,35253168,35253217,35253168,35253169,50,-,CGTCATGTTGCCATGGAGATGAAAGCAGACATCAACGCCAAGCAGGAGGA,"Exon (Adcy5-201/Adcy5, exon 3 of 21)",16,35154877,35305738,150862,1,Adcy5-201,98291,Adcy5-201,Adcy5,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,4,224129,ENSMUSG00000022840,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18093,cg14540643,0.0000536,0.00000537,9.970105422,1.73E-20,gain,yes,-0.00000937,0.00000913,-1.026906224,0.305265226,neg,ns,0.006267133,0.002673934,2.34378771,0.019720448,pos,ns,1.705083231,-0.000136618,0.000092,-1.485683135,0.138379176,neg,ns,0.105224376,Gnao1,Gnao1_Exon,8,93811368,93811417,93811368,93811369,50,-,CGCCCTCGAGCGGAGCAAGGCGATTGAGAAAAACCTCAAAGAGGATGGCA,"Exon (Gnao1-202/Gnao1, exon 1 of 2)",8,93809966,93950403,140438,1,Gnao1-206,1402,Gnao1-206;Gnao1-202;Gnao1-201;Gnao1-203;Gnao1-207,Gnao1;Gnao1;Gnao1;Gnao1;Gnao1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,13,14681,ENSMUSG00000031748,conserved gene and region,8,93811274,93811435,162,*,162,16,0.648148148,0.965722802,0.098765432,1.97E-12,CpGisland,TRUE,U3,Pr-B
19964,cg21148119,-0.00000356,0.00000144,-2.466547453,0.014182904,loss,ns,-0.00000252,0.00000245,-1.0269036,0.305266459,neg,ns,0.000614377,0.000718689,0.854858449,0.393289686,pos,ns,0.405287442,-0.0000192,0.0000247,-0.778567148,0.436828604,neg,ns,0.072411515,Etv4,Etv4_fiveUTR,11,101785247,101785296,101785247,101785248,50,-,CGCAGCAGACAGTTGTGAGCCCGGGGGAGCAGCTGATTGGTGCATTTCCT,Promoter (<=1kb),11,101773831,101785258,11428,2,Etv4-206,0,Etv4-212;Etv4-201;Etv4-202;Etv4-203;Etv4-206;Etv4-204;Etv4-209;Etv4-205;Etv4-210;Etv4-208;Etv4-211,Etv4;Etv4;Etv4;Etv4;Etv4;Etv4;Etv4;Etv4;Etv4;Etv4;Etv4,0;0;0;-386;0;-756;-25;-859;0;0;-399,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,5,18612,ENSMUSG00000017724,mapped to different genes,11,101784843,101785269,427,*,427,42,0.665105386,0.893839713,0.098360656,7.24E-32,CpGisland,TRUE,U3,Pr-B
5295,cg25073174,0.000112353,0.0000157,7.170138844,5.52E-12,gain,yes,-0.0000273,0.0000266,-1.02669169,0.305366103,neg,ns,0.029224811,0.007798913,3.747292773,0.000213156,pos,ns,3.671301866,-0.000692867,0.000268204,-2.583359424,0.010242069,neg,ns,0.349599029,Atxn7l1,Atxn7l1_Intron,12,33345053,33345102,33345053,33345054,50,+,CGGCAGGGTGTGGAACCTCGACATGACCCCCAGCTGTTCTTTGTAAGGGA,"Intron (Atxn7l1-212/Atxn7l1, intron 6 of 12)",12,33147754,33373030,225277,1,Atxn7l1-212,197299,Atxn7l1-212;Atxn7l1-204;Atxn7l1-202;Atxn7l1-207;Atxn7l1-213;Atxn7l1-205,Atxn7l1;Atxn7l1;Atxn7l1;Atxn7l1;Atxn7l1;Atxn7l1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,24,380753,ENSMUSG00000020564,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
4411,cg19393451,0.000000657,0.00000146,0.449313702,0.653519341,gain,ns,-0.00000255,0.00000248,-1.026680706,0.305371269,neg,ns,0.00031478,0.000727769,0.432527733,0.665658635,pos,ns,0.17674843,-0.0000392,0.000025,-1.565819854,0.118410988,neg,ns,0.970444524,Epha7,Epha7_Exon,4,28821092,28821141,28821092,28821093,50,+,CGGACTAACTGGATTTCCAAAGGCAATGCACAAAGGATTTTTGTAGAATT,"Exon (Epha7-202/Epha7, exon 3 of 10)",4,28813131,28947047,133917,1,Epha7-202,7961,Epha7-202;Epha7-201;Epha7-204;Epha7-203;Epha7-208;Epha7-207,Epha7;Epha7;Epha7;Epha7;Epha7;Epha7,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,5,13841,ENSMUSG00000028289,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23601,cg02658515,-0.00000305,0.00000201,-1.520690428,0.129356834,loss,ns,-0.0000035,0.00000341,-1.026505827,0.305453517,neg,ns,0.00000509,0.000998418,0.005093674,0.99593913,pos,ns,0.001767204,-0.0000118,0.0000343,-0.343434901,0.731504105,neg,ns,0.970140477,Vps18,Vps18_Exon,2,119294046,119294095,119294046,119294047,50,+,CGTACCCAGGCCACACTGCTGACCACCTGGCTGACAGAGCTCTACCTGAG,"Exon (Vps18-202/Vps18, exon 4 of 4)",2,119288740,119295487,6748,1,Vps18-202,5306,Vps18-202;Vps18-201;Vps18-203,Vps18;Vps18;Vps18,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,4,228545,ENSMUSG00000034216,conserved gene and region,2,119293983,119294047,65,*,65,8,0.661538462,1.176470588,0.123076923,0.000000426,CpGisland,TRUE,U10,Tr-S
3147,cg11232780,-0.0000264,0.000011,-2.394105835,0.017254903,loss,ns,-0.0000193,0.0000188,-1.026437651,0.305485586,neg,ns,-0.007872753,0.005496205,-1.432398126,0.153037486,neg,ns,0.815202177,-0.0000425,0.000189014,-0.224802511,0.822281019,neg,ns,0.787876833,Gm11879,Gm11879_Intergenic_downstream,4,22987129,22987178,22987129,22987130,50,+,CGGGTTAGCTAAAAATTATGGCATGCAGCCTCCAGTTCAAAATAGGTGCA,Distal Intergenic,4,22704057,22704758,702,1,Gm11879-201,283072,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,19,19,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1476,cg24458752,-0.0000144,0.00000631,-2.289652035,0.022713234,loss,ns,-0.000011,0.0000107,-1.026430998,0.305488715,neg,ns,-0.002762322,0.003139863,-0.879758784,0.379671463,neg,ns,0.420592044,-0.00027088,0.00010798,-2.508620492,0.012630605,neg,ns,0.828270269,Triqk,Triqk_Intergenic_downstream,4,13146945,13146994,13146945,13146946,50,-,CGCAGATGCCACCATATGGGTCTCGAAAAACTAGTTGCACTGATGATTCC,Distal Intergenic,4,12917967,12981070,63104,1,Triqk-202,229027,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,11,208820,ENSMUSG00000055963,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7400,cg05330949,0.0000305,0.00000956,3.184550622,0.0015972,gain,ns,0.0000167,0.0000162,1.026347641,0.305527928,pos,ns,-0.0000274,0.004760584,-0.0057459,0.995419156,neg,ns,0.001994006,0.000254001,0.000163716,1.551471361,0.121809043,pos,ns,0.758078871,Nr2e1,Nr2e1_Intergenic_downstream,10,42540568,42540617,42540616,42540617,50,-,CTTTAATCCAGTTGTTTTCATGTTCACTAAATCCAAACCATGTTTAACCG,Distal Intergenic,10,42563272,42568828,5557,2,Nr2e1-202,28260,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,11,21907,ENSMUSG00000019803,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20483,cg23400900,-0.0000169,0.00000476,-3.548703013,0.000447077,loss,ns,-0.00000829,0.00000808,-1.026148667,0.305621542,neg,ns,0.002184176,0.002367802,0.922448546,0.357012026,pos,ns,0.447317154,-0.0000887,0.0000814,-1.088842208,0.277069214,neg,ns,0.895907609,Unc79,Unc79_Exon,12,103074867,103074916,103074867,103074868,50,+,CGTAGCCCTTTCAAGAATTTTGGACACCCAGGAGGAAGGACTATTGACTT,"Exon (Unc79-202/Unc79, exon 18 of 49)",12,102948859,103184001,235143,1,Unc79-202,126008,Unc79-202;Unc79-208;Unc79-201;Unc79-205;Unc79-207,Unc79;Unc79;Unc79;Unc79;Unc79,0;0;0;0;15788,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,24,217843,ENSMUSG00000021198,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19135,cg09863845,-0.000000673,0.00000105,-0.637631617,0.524184178,loss,ns,0.00000184,0.00000179,1.026088924,0.305649653,pos,ns,0.001574286,0.000525026,2.998490437,0.002932848,pos,ns,2.532710421,-0.0000285,0.0000181,-1.580435296,0.115026963,neg,ns,0.96868382,Emsy,Emsy_Exon,7,98597175,98597224,98597175,98597176,50,-,CGATGGCTGACTGAAAATAGAGGAGGTGATGATATTTCTCCAGAAATCAC,"Exon (Emsy-202/Emsy, exon 17 of 20)",7,98587137,98656779,69643,2,Emsy-202,59555,Emsy-202;Emsy-207;Emsy-201;Emsy-203;Emsy-205;Emsy-206;Emsy-213;Emsy-212;Emsy-204,Emsy;Emsy;Emsy;Emsy;Emsy;Emsy;Emsy;Emsy;Emsy,0;0;0;-2940;-2159;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,13,16,233545,ENSMUSG00000035401,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10260,cg18397523,0.0000274,0.00000443,6.194484324,1.86E-09,gain,yes,0.00000771,0.00000752,1.02591626,0.30573091,pos,ns,0.007933045,0.002202943,3.601112995,0.000368856,pos,ns,3.433143103,-0.000131755,0.0000758,-1.739128594,0.08300481,neg,ns,0.072760097,Evx1,Evx1_fiveUTR,6,52313566,52313615,52313566,52313567,50,+,CGGTACTGTAATGACGATTGCAGCAGGAGGATGACAGCTTAGAAAGAAGA,Promoter (<=1kb),6,52313498,52318378,4881,1,Evx1-201,68,Evx1-201;Evx1-202,Evx1;Evx1,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,7,19,14028,ENSMUSG00000005503,mapped to different genes,6,52313448,52313581,134,*,134,12,0.574626866,1.093877551,0.089552239,6.76E-09,CpGisland,TRUE,U13,Hc-P
5758,cg22754734,0.0000161,0.00000724,2.218734029,0.027228839,gain,ns,0.0000126,0.0000123,1.025774995,0.3057974,pos,ns,0.004387249,0.003605831,1.216709627,0.224640235,pos,ns,0.648512455,-0.000126012,0.000124004,-1.016187429,0.310332576,neg,ns,0.602211567,Tnxb,Tnxb_Promoter,17,34656862,34656911,34656910,34656911,50,-,CAGATGTGTGGTTGCCACAGCGACCTGGGTCCCTCTGGTAAATACAGGCG,Promoter (3-4kb),17,34660457,34719627,59171,1,Tnxb-204,-3595,Atf6b-201;Atf6b-202;Atf6b-203;Tnxb-204,Atf6b;Atf6b;Atf6b;Tnxb,9716;9651;5235;-3546,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,1,81877,ENSMUSG00000033327,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3464,cg18984859,-0.00000764,0.00000416,-1.836263269,0.067276216,loss,ns,-0.00000725,0.00000707,-1.025622198,0.305869329,neg,ns,-0.00554642,0.002070915,-2.678246347,0.007795474,neg,ns,2.108157467,0.0000752,0.0000712,1.05566073,0.291945257,pos,ns,0.91577694,Bcl11a,Bcl11a_Exon,11,24163174,24163223,24163222,24163223,50,+,TACAACTTGCAAACAGCCATTCACCAGTGCATGGTTTCTCTTGCAACACG,"Exon (Bcl11a-201/Bcl11a, exon 4 of 5)",11,24078056,24173194,95139,1,Bcl11a-201,85118,Bcl11a-201;Bcl11a-203;Bcl11a-202;Bcl11a-204;Bcl11a-206,Bcl11a;Bcl11a;Bcl11a;Bcl11a;Bcl11a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,51,98,14025,ENSMUSG00000000861,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7461,cg20291049,0.00023281,0.0000199,11.70522849,1.87E-26,gain,yes,-0.0000346,0.0000338,-1.025415275,0.305966756,neg,ns,0.015982016,0.009899149,1.614483768,0.107439877,pos,ns,0.968834496,-0.000281679,0.000340431,-0.827419572,0.408635763,neg,ns,0.190970909,Pou3f3,Pou3f3_Exon,1,42697343,42697392,42697391,42697392,50,-,GTCCTCTGTCAAGATGGTCCAGAGCGACTTCATGCAGGGGGCCATGGCCG,"Exon (Pou3f3-202/Pou3f3, exon 4 of 4)",1,42694925,42703176,8252,1,Pou3f3-202,2418,Pou3f3-202;Pou3f3-201,Pou3f3;Pou3f3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,37,18993,ENSMUSG00000045515,conserved gene and region,1,42696575,42698226,1652,*,1652,217,0.762106538,0.905802448,0.131355932,1.22E-192,CpGisland,TRUE,NA,NRS
16995,cg22998648,0.000000234,0.000000826,0.28314669,0.777253377,gain,ns,0.00000144,0.0000014,1.025348136,0.305998371,pos,ns,0.00000392,0.000411217,0.009529077,0.992403141,pos,ns,0.00331187,-0.000000376,0.0000141,-0.026581508,0.978810625,neg,ns,0.980763748,Zfp423,Zfp423_Exon,8,87783029,87783078,87783077,87783078,50,-,GGCTTGCTGGAGCTGTGGGTCTTCAGGTGGATCTTGAGGTGGTCGCTGCG,"Exon (Zfp423-203/Zfp423, exon 2 of 6)",8,87661810,87804439,142630,2,Zfp423-203,21361,Zfp423-203;Zfp423-202;Zfp423-201;Zfp423-207;Zfp423-206;Zfp423-205;Zfp423-204,Zfp423;Zfp423;Zfp423;Zfp423;Zfp423;Zfp423;Zfp423,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,53,94187,ENSMUSG00000045333,conserved gene and region,8,87783072,87783353,282,*,282,20,0.595744681,0.803418803,0.070921986,1.36E-12,CpGisland,TRUE,U15,NS
20513,cg06626359,0.000164791,0.0000109,15.14813673,3.52E-39,gain,yes,-0.0000189,0.0000185,-1.025235572,0.306051383,neg,ns,0.029800655,0.005414403,5.503959592,7.79E-08,pos,ns,7.108344226,-0.000836756,0.000186201,-4.493832677,0.00000989,neg,ns,0.634120027,Unc79,Unc79_threeUTR,12,103183576,103183625,103183624,103183625,50,-,AGTCCTCGGAAGCAGCCTCTCAATTTTATCCTCTATGAGTGGACTCCTCG,3' UTR,12,102948859,103184001,235143,1,Unc79-202,234717,Unc79-202;Unc79-208;Unc79-201;Unc79-205,Unc79;Unc79;Unc79;Unc79,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,24,217843,ENSMUSG00000021198,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11445,cg22837949,0.00000169,0.00000318,0.529283176,0.596987824,gain,ns,-0.00000555,0.00000541,-1.025197915,0.306069119,neg,ns,0.007375812,0.001584878,4.653866027,0.00000483,pos,ns,5.315660762,-0.000312856,0.0000545,-5.740065358,2.25E-08,neg,yes,0.083457858,Zfp692,Zfp692_Exon,11,58307686,58307735,58307734,58307735,50,-,TGGAGCAGTGGTGCCTCCTCAAGGAGCGGCTGGGCTTCTCCCTGCACTCG,Promoter (<=1kb),11,58307069,58314613,7545,1,Zfp692-202,617,Zfp692-202;Zfp692-201,Zfp692;Zfp692,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,103836,ENSMUSG00000037243,conserved gene and region,11,58307462,58307836,375,*,375,37,0.677333333,0.860251721,0.098666667,3.44E-28,CpGisland,TRUE,U4,Pr-F
25391,cg02257599,-0.00000231,0.00000157,-1.473148657,0.141725575,loss,ns,0.00000273,0.00000266,1.02516134,0.306086345,pos,ns,0.002769531,0.000779593,3.552534578,0.000440868,pos,ns,3.355691035,-0.0000884,0.0000268,-3.296247173,0.001093584,neg,ns,0.95042785,Gm9341,Gm9341_Intergenic_downstream,7,136196659,136196708,136196707,136196708,50,-,GCTTCATTAATCTTTGTTGAATACAATGGCATACATCTTTAATGCGGCCG,Distal Intergenic,7,135952798,135953783,986,1,Gm9341-201,243910,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,27,28,668764,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10733,cg14834925,0.00000455,0.00000416,1.092262506,0.275565857,gain,ns,-0.00000725,0.00000707,-1.025035384,0.306145676,neg,ns,0.000133906,0.002072698,0.06460458,0.948530478,pos,ns,0.02294871,0.0000436,0.0000713,0.6119754,0.541002608,pos,ns,0.463919541,Zfp608,Zfp608_Intron,18,55040863,55040912,55040863,55040864,50,-,CGACAAGGTCAGAGTGCCTTTCATTCCTGCAATAATCAACCAGTGTAGCT,"Intron (Gm4221-201/Gm4221-201, intron 1 of 4)",18,54888723,54992555,103833,2,Zfp608-203,-48357,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,32,269023,ENSMUSG00000052713,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
12240,cg23724011,-0.0000381,0.0000148,-2.574339938,0.01050711,loss,ns,0.0000258,0.0000251,1.025000339,0.306162185,pos,ns,0.004596466,0.007362638,0.624296114,0.532892298,pos,ns,0.273360556,-0.000306272,0.000253201,-1.209603167,0.227352832,neg,ns,0.579167445,Epha3,Epha3_Intron,16,63556626,63556675,63556626,63556627,50,+,CGTGAGCTCACACTTTTACTAGACAAATTAGATAGGTTTCAATCCATGCA,"Intron (Epha3-201/Epha3, intron 15 of 16)",16,63543534,63864158,320625,2,Epha3-201,307483,Epha3-201;Epha3-203,Epha3;Epha3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,8,13837,ENSMUSG00000052504,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14678,cg14459747,0.0000495,0.00000519,9.530484595,4.74E-19,gain,yes,-0.00000904,0.00000882,-1.024906213,0.306206528,neg,ns,0.008066284,0.002584267,3.121303901,0.001970129,pos,ns,2.705505352,-0.000159194,0.0000889,-1.791257905,0.074227316,neg,ns,0.062331148,Ctnna2,Ctnna2_fiveUTR,6,77243531,77243580,77243579,77243580,50,-,TTCTCCAGTCTCTCTGGAAAGATTCTCGCTAATGGATTTCCTGCTGCTCG,5' UTR,6,76881637,77979699,1098063,2,Ctnna2-204,736119,Ctnna2-204;Ctnna2-205;Ctnna2-202;Ctnna2-201;Lrrtm1-201;Lrrtm1-202;Lrrtm1-203;Lrrtm1-204,Ctnna2;Ctnna2;Ctnna2;Ctnna2;Lrrtm1;Lrrtm1;Lrrtm1;Lrrtm1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,24,12386,ENSMUSG00000063063,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
14045,cg16941314,-0.00000301,0.00000385,-0.783069244,0.434184259,loss,ns,0.0000067,0.00000654,1.024903396,0.306207856,pos,ns,0.000971657,0.001915715,0.507203622,0.612372569,pos,ns,0.212984272,0.0000799,0.0000659,1.213502224,0.225861637,pos,ns,0.920525024,Lnpk,Lnpk_Intergenic_downstream,2,74450576,74450625,74450624,74450625,50,-,GTTTCTTGATCACCATTATAAATTGCTAATAGGGCAGAAAGCGCTAAGCG,Distal Intergenic,2,74520341,74533106,12766,2,Lnpk-204,82530,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,15,16,69605,ENSMUSG00000009207,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10989,cg12825194,0.0000141,0.00000335,4.223051228,0.0000317,gain,ns,-0.00000583,0.00000569,-1.024832944,0.306241049,neg,ns,-0.002116658,0.00166764,-1.269253561,0.205302729,neg,ns,0.687605278,0.0000753,0.0000574,1.313695685,0.189920013,pos,ns,0.911390245,Macroh2a1,Macroh2a1_Exon,13,56088309,56088358,56088309,56088310,50,+,CGATCGAGGCAATGTCAGCCTGTACAACTTGCAACTATAACAGGTAAACA,"Exon (Macroh2a1-202/Macroh2a1, exon 6 of 9)",13,56073619,56135631,62013,2,Macroh2a1-201,47273,Macroh2a1-201;Macroh2a1-202;Macroh2a1-203;Macroh2a1-206,Macroh2a1;Macroh2a1;Macroh2a1;Macroh2a1,0;0;-3788;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,9,26914,ENSMUSG00000015937,mapped to different genes,13,56088141,56088314,174,*,174,13,0.58045977,0.887058824,0.074712644,1.25E-08,CpGisland,TRUE,U10,Tr-S
1698,cg02771111,-0.0000488,0.0000152,-3.209890431,0.001467022,loss,ns,-0.0000265,0.0000258,-1.02467751,0.30631429,neg,ns,-0.015791564,0.007572478,-2.085389139,0.037851689,neg,ns,1.42191474,-0.000171702,0.000260417,-0.659335495,0.510169839,neg,ns,0.152574476,Tle4,Tle4_fiveUTR,19,14598023,14598072,14598023,14598024,50,-,CGCTCAGCACAGCTCTAACAACACGCTCTGTGTAGGTGACTTCTTTGACC,Promoter (<=1kb),19,14448150,14598051,149902,2,Tle4-201,0,Tle4-201;Tle4-202;Tle4-203,Tle4;Tle4;Tle4,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,29,21888,ENSMUSG00000024642,conserved gene and region,19,14597914,14598047,134,*,134,11,0.5,1.327927928,0.082089552,8.77E-08,CpGisland,TRUE,U1,Pr-A
3407,cg22418060,0.00000177,0.00000228,0.773688862,0.439704401,gain,ns,0.00000397,0.00000388,1.024629473,0.306336928,pos,ns,0.001807938,0.001135811,1.591758802,0.112458072,pos,ns,0.949009366,-0.0000756,0.0000391,-1.934655452,0.053942215,neg,ns,0.953085897,A830031A19Rik,A830031A19Rik_Intergenic_downstream,11,24016396,24016445,24016396,24016397,50,+,CGTATTGTTATAATAATTTAAGAGTGGTGTGATCACATTTACATTTTATA,Distal Intergenic,11,24048955,24075054,26100,2,A830031A19Rik-201,58609,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,23,268391,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2497,cg19672145,0.000043,0.00002,2.149509399,0.032367712,gain,ns,-0.0000349,0.000034,-1.024616578,0.306343005,neg,ns,0.010906244,0.00996551,1.094398948,0.274629649,pos,ns,0.561252579,-0.000471877,0.000342713,-1.376885816,0.169541056,neg,ns,0.434177006,Spred2,Spred2_Exon,11,19998258,19998307,19998258,19998259,50,-,CGGCTTTCTCATCCATGGTGAACGACAGAAAGACAAACTGGTAATGGCAG,"Exon (Spred2-202/Spred2, exon 2 of 7)",11,19924375,20024026,99652,1,Spred2-202,73883,Spred2-202;Spred2-201;Spred2-203,Spred2;Spred2;Spred2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,13,114716,ENSMUSG00000045671,conserved gene and region,11,19998072,19998386,315,*,315,19,0.523809524,0.886666667,0.06031746,9.62E-11,CpGisland,TRUE,NA,NRS
19898,cg13826884,0.0000711,0.000013,5.48841895,8.44E-08,gain,yes,-0.0000225,0.000022,-1.024588794,0.306356099,neg,ns,0.004742291,0.0064471,0.735569604,0.462548822,pos,ns,0.334842421,-0.000131998,0.000221715,-0.595349372,0.552044316,neg,ns,0.519326678,Nkx6-1,Nkx6-1_Intergenic_downstream,5,101591410,101591459,101591410,101591411,50,+,CGGTCAGTCACATTCCTCAGAGGGGGGTCACAGGTCACCCCAGCCCCTGT,Distal Intergenic,5,101658139,101664996,6858,2,Nkx6-1-201,73537,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,10,18096,ENSMUSG00000035187,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9028,cg26581639,-0.0000264,0.00000502,-5.265726749,0.000000262,loss,yes,-0.00000874,0.00000853,-1.024476772,0.306408896,neg,ns,-0.004265185,0.002498262,-1.707261001,0.088774818,neg,ns,1.051710209,-0.0000321,0.0000859,-0.373227362,0.709234318,neg,ns,0.908329945,Gm18761,Gm18761_Intron,14,46611128,46611177,46611176,46611177,50,+,ATCTGGTCTATATTTCTTGAACTATTTCCCTTTTATCACAAGAAAAATCG,"Intron (Gm49319-203/Gm49319-203, intron 4 of 14)",14,46607552,46608952,1401,1,Gm18761-201,3576,Gm18761-201,Gm18761,3576,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,6,100417681,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3468,cg15054697,-0.00000308,0.00000341,-0.903540116,0.36694088,loss,ns,-0.00000593,0.00000579,-1.024475896,0.306409309,neg,ns,-0.002829153,0.001695799,-1.668330469,0.096259816,neg,ns,1.016554973,0.0000372,0.0000583,0.637119101,0.524517493,pos,ns,0.921678298,Bcl11a,Bcl11a_Exon,11,24163353,24163402,24163401,24163402,50,-,TTGCAGACAATAACCCCTTTAACCTGCTAAGAATACCAGGATCAGTATCG,"Exon (Bcl11a-201/Bcl11a, exon 4 of 5)",11,24078056,24173194,95139,1,Bcl11a-201,85297,Bcl11a-201;Bcl11a-203;Bcl11a-202;Bcl11a-204;Bcl11a-206,Bcl11a;Bcl11a;Bcl11a;Bcl11a;Bcl11a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,Exon,51,98,14025,ENSMUSG00000000861,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27665,cg03257834,-0.0000213,0.00000387,-5.493738055,8.22E-08,loss,yes,-0.00000674,0.00000658,-1.024442222,0.306425181,neg,ns,-0.001636718,0.001928181,-0.848840301,0.396625153,neg,ns,0.401619747,0.000032,0.0000663,0.482312811,0.629924117,pos,ns,0.964942892,Sdccag8,Sdccag8_Intron,1,176946371,176946420,176946371,176946372,50,-,CGAATTACATATTAGTTAGCGTTTAAAAGAGAAAATGGAAAGTATTGCCC,"Intron (Sdccag8-204/Sdccag8, intron 15 of 16)",1,176814660,176956360,141701,1,Sdccag8-204,131711,Sdccag8-204;Sdccag8-201;Sdccag8-203,Sdccag8;Sdccag8;Sdccag8,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,20,76816,ENSMUSG00000026504,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8112,cg09770897,-0.0000156,0.0000064,-2.444399869,0.015066166,loss,ns,0.0000111,0.0000109,1.024434794,0.306428683,pos,ns,0.002214196,0.003185426,0.695101911,0.487512121,pos,ns,0.312014582,-0.00013212,0.000109547,-1.206062822,0.228712934,neg,ns,0.928335259,Ebf1,Ebf1_Intron,11,44753560,44753609,44753560,44753561,50,+,CGTTGTACCCATCTGAATGATTAATCTGCTCATTAAAAGAGTGCCGATGG,"Intron (Ebf1-203/Ebf1, intron 6 of 15)",11,44617317,45004995,387679,1,Ebf1-203,136243,Ebf1-203;Ebf1-202;Ebf1-201,Ebf1;Ebf1;Ebf1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,80,13591,ENSMUSG00000057098,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21581,cg24090938,0.00000278,0.00000327,0.850069992,0.395942225,gain,ns,-0.00000568,0.00000555,-1.024424444,0.306433561,neg,ns,-0.004379247,0.001625305,-2.694415106,0.007435523,neg,ns,2.128688468,0.000102965,0.0000559,1.842144965,0.066408898,pos,ns,0.86425314,Klhdc8b,Klhdc8b_Exon,9,108449659,108449708,108449707,108449708,50,-,GCCCCATAGCAGGGTGTGGGCATGGAGGGTAGCGAAAGCCAGCAGTCCCG,"Exon (Klhdc8b-207/Klhdc8b, exon 8 of 11)",9,108447636,108461581,13946,2,Klhdc8b-207,11873,BC048562-201;BC048562-202;Klhdc8b-207;Klhdc8b-205;Klhdc8b-201;Klhdc8b-212;Klhdc8b-214;Klhdc8b-210;Klhdc8b-213;Klhdc8b-211;Klhdc8b-206;Klhdc8b-202;Klhdc8b-203;Klhdc8b-208,BC048562;BC048562;Klhdc8b;Klhdc8b;Klhdc8b;Klhdc8b;Klhdc8b;Klhdc8b;Klhdc8b;Klhdc8b;Klhdc8b;Klhdc8b;Klhdc8b;Klhdc8b,13177;13165;0;0;0;0;0;0;0;3058;3093;11221;11221;7242,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,78267,ENSMUSG00000032609,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8126,cg15997398,0.00000269,0.0000022,1.219998677,0.223392674,gain,ns,0.00000384,0.00000374,1.024374214,0.306457238,pos,ns,0.000874362,0.00109685,0.797157401,0.425969749,pos,ns,0.370621242,0.0000162,0.0000377,0.429844871,0.667607122,pos,ns,0.037105601,Pax2,Pax2_Exon,19,44760852,44760901,44760900,44760901,50,-,GTTTTTTTCTTGTCTCTCCCCAGCAGGGCACGGGGGTGTGAACCAGCTCG,"Exon (Pax2-203/Pax2, exon 2 of 10)",19,44756045,44837851,81807,1,Pax2-203,4807,Pax2-203;Pax2-201;Pax2-202,Pax2;Pax2;Pax2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,16,166,18504,ENSMUSG00000004231,conserved gene and region,19,44760882,44761007,126,*,126,11,0.706349206,0.715170279,0.087301587,0.000000046,CpGisland,TRUE,U13,Hc-P
19349,cg17711361,0.000155115,0.00001,15.51438453,1.42E-40,gain,yes,-0.0000174,0.000017,-1.024279352,0.306501957,neg,ns,0.008386758,0.004976191,1.685377087,0.092922124,pos,ns,1.031880874,-0.000206273,0.000171131,-1.205354423,0.228985779,neg,ns,0.605414307,C1ql4,C1ql4_Promoter,15,99089192,99089241,99089192,99089193,50,+,CGCTGCAGAGAGACACCCAGGTCCGTGTTTGGACTCCAATGTGACATATC,Promoter (1-2kb),15,99084086,99087817,3732,2,C1ql4-201,-1375,C1ql4-201;Dnajc22-202,C1ql4;Dnajc22,-1375;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,2,239659,ENSMUSG00000001076,conserved gene and region,15,99089170,99089287,118,*,118,10,0.584745763,1.040564374,0.084745763,0.000000309,CpGisland,TRUE,U3,Pr-B
21685,cg23441040,0.0000528,0.0000127,4.163803126,0.0000406,gain,ns,0.0000221,0.0000215,1.024225496,0.306527348,pos,ns,0.008894341,0.006307686,1.410079772,0.159518659,pos,ns,0.797188509,-0.000326748,0.000216921,-1.506302693,0.133007769,neg,ns,0.621036923,Brwd3,Brwd3_fiveUTR,X,108834281,108834330,108834281,108834282,50,-,CGCATCACGTTTCGACCCATAGATATTCTAGCCCAAGAGCTGAGGAGGCG,Promoter (<=1kb),20,108737016,108834348,97333,2,Brwd3-205,18,Brwd3-205;Brwd3-201;Brwd3-204;Brwd3-203;Brwd3-202,Brwd3;Brwd3;Brwd3;Brwd3;Brwd3,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,5,382236,ENSMUSG00000063663,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
20222,cg26495946,0.00000263,0.00000969,0.271030877,0.786547663,gain,ns,0.0000169,0.0000165,1.024131345,0.306571738,pos,ns,0.001600206,0.004820526,0.331956612,0.740146347,pos,ns,0.1306824,0.0000615,0.000165777,0.37073796,0.71108592,pos,ns,0.179937837,Hoxc11,Hoxc11_Exon,15,102954591,102954640,102954591,102954592,50,-,CGGCGAGCGAGGGAGCTGCGCCTCCAACCTCTATCTGCCCAGTTGCACTT,Promoter (<=1kb),15,102954427,102957708,3282,1,Hoxc11-201,164,Hoxc11-201,Hoxc11,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,24,109663,ENSMUSG00000001656,mapped to different genes,15,102954221,102954599,379,*,379,28,0.519788918,1.094020619,0.073878628,6.96E-18,CpGisland,TRUE,U13,Hc-P
17719,cg27640438,-0.00000236,0.00000106,-2.237138309,0.025987851,loss,ns,-0.00000184,0.00000179,-1.024106003,0.306583687,neg,ns,-0.000300214,0.0005257,-0.571074837,0.568362672,neg,ns,0.245374452,-0.0000268,0.0000181,-1.482576062,0.139202931,neg,ns,0.020695178,Ssbp2,Ssbp2_fiveUTR,13,91461171,91461220,91461219,91461220,50,+,TGCTCTCGGCACAAGCATGTACGGCAAAGGCAAGAGTAACAGCAGCGCCG,Promoter (<=1kb),13,91461181,91524866,63686,1,Ssbp2-207,0,Ssbp2-209;Ssbp2-201;Ssbp2-202;Ssbp2-206;Ssbp2-204;Ssbp2-208;Ssbp2-210;Ssbp2-207,Ssbp2;Ssbp2;Ssbp2;Ssbp2;Ssbp2;Ssbp2;Ssbp2;Ssbp2,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,6,18,66970,ENSMUSG00000003992,conserved gene and region,13,91460857,91462307,1451,*,1451,185,0.749138525,0.979940131,0.127498277,1.56E-161,CpGisland,TRUE,U1,Pr-A
3001,cg25483590,-0.000000948,0.00000287,-0.330148809,0.741510521,loss,ns,-0.000005,0.00000488,-1.024028408,0.306620276,neg,ns,-0.001804267,0.001429885,-1.261826321,0.207959861,neg,ns,0.682020482,0.0000781,0.0000492,1.587654158,0.113383964,pos,ns,0.940005568,Lrmda,Lrmda_Intron,14,22281846,22281895,22281846,22281847,50,+,CGGTACAGAGGCTTGATTGCATACTGTGAATACTGTTTATTGGAGAATGG,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,262134,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206,Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10914,cg07983682,-0.00000695,0.0000048,-1.447286757,0.148827097,loss,ns,0.00000836,0.00000816,1.023942788,0.306660652,pos,ns,-0.004124348,0.002390954,-1.724980497,0.085527658,neg,ns,1.067893419,0.000130151,0.0000822,1.582872113,0.114470257,pos,ns,0.952619176,Tcf7l2,Tcf7l2_Intron,19,55887843,55887892,55887843,55887844,50,+,CGCATTCAGAACTGGAGAATAGATTTACCCTTGGCTTCAAATAGTCGACG,"Intron (Tcf7l2-213/Tcf7l2, intron 4 of 13)",19,55741820,55933229,191410,1,Tcf7l2-213,146023,Tcf7l2-213;Tcf7l2-201;Tcf7l2-208;Tcf7l2-211;Tcf7l2-212;Tcf7l2-206;Tcf7l2-204;Tcf7l2-205;Tcf7l2-222;Tcf7l2-215;Tcf7l2-214;Tcf7l2-207;Tcf7l2-202;Tcf7l2-209;Tcf7l2-210;Tcf7l2-217,Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,55,88,21416,ENSMUSG00000024985,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8482,cg16590183,0.0000607,0.0000131,4.62198995,0.00000558,gain,ns,0.0000228,0.0000223,1.023902926,0.306679452,pos,ns,-0.001574644,0.006537134,-0.240876871,0.809809779,neg,ns,0.091616983,0.000368187,0.000224811,1.637757416,0.10248691,pos,ns,0.225108738,Lbx1,Lbx1_Intergenic_downstream,19,45225659,45225708,45225707,45225708,50,+,CTGCTCAGGCTGAGCAGATCATAAAACCGGACAGGCAATTTCTGCTCCCG,Distal Intergenic,19,45232684,45235812,3129,2,Lbx1-201,10104,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,30,50,16814,ENSMUSG00000025216,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
3026,cg18485081,0.000088,0.0000134,6.572029368,2.10E-10,gain,yes,0.0000233,0.0000227,1.02376498,0.306744514,pos,ns,0.013570291,0.006664838,2.036102339,0.042589876,pos,ns,1.370693619,0.000190212,0.000229203,0.829885051,0.407242388,pos,ns,0.610571255,Lrmda,Lrmda_Intron,14,22440438,22440487,22440486,22440487,50,-,AACGCCACCAGCACTTATCATTAACTTTCACACCAAGATTTTAATCAGCG,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,420726,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206;Lrmda-202,Lrmda;Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20623,cg06729473,-0.000027,0.00000581,-4.647285189,0.00000498,loss,ns,0.0000101,0.00000986,1.023743186,0.306754794,pos,ns,-0.004731668,0.002889793,-1.637372895,0.102567232,neg,ns,0.988991364,0.0000718,0.0000994,0.722156429,0.470742695,pos,ns,0.903291259,Dab1,Dab1_Intron,4,103994197,103994246,103994245,103994246,50,+,TTGCTAATAGCTGCCATATTTGTGTTTAAGGACCTGCAAAGGATTAAACG,"Intron (Dab1-205/Dab1, intron 2 of 3)",4,103619359,104178521,559163,1,Dab1-205,374838,Dab1-205;Dab1-202,Dab1;Dab1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,13,13131,ENSMUSG00000028519,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1225,cg03860580,0.000108371,0.00000875,12.38574543,6.76E-29,gain,yes,-0.0000152,0.0000149,-1.023738362,0.306757069,neg,ns,0.031625827,0.00435481,7.262275274,3.09E-12,pos,yes,11.5095472,-0.0000888,0.000149762,-0.59307964,0.553560278,neg,ns,0.639873869,Bcor,Bcor_Intron,X,12073842,12073891,12073890,12073891,50,+,CATCTAAAAGCTCGCCCAGCCCCGGGTCAATGTAAATTGATCATTGTCCG,"Intron (Bcor-202/Bcor, intron 1 of 14)",20,12036740,12080553,43814,2,Bcor-202,6662,Bcor-202;Bcor-203;Bcor-204;Bcor-206;Bcor-201;Bcor-207;Bcor-205,Bcor;Bcor;Bcor;Bcor;Bcor;Bcor;Bcor,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,56,74,71458,ENSMUSG00000040363,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26564,cg13840252,0.0000126,0.00000851,1.475806231,0.141010899,gain,ns,-0.0000148,0.0000145,-1.023732631,0.306759772,neg,ns,0.00227227,0.004234008,0.536671296,0.591879616,pos,ns,0.227766617,-0.0000245,0.000145607,-0.168414581,0.866366964,neg,ns,0.912791318,Casz1,Casz1_Intron,4,148921887,148921936,148921887,148921888,50,+,CGCAAATTAGATGGTTATTCGTTTTGAAAATTGACAGAAAAACAATAAAA,"Intron (Casz1-201/Casz1, intron 4 of 15)",4,148804429,148945129,140701,1,Casz1-201,117458,Casz1-201;Casz1-202;Casz1-206,Casz1;Casz1;Casz1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,94,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19752,cg07571013,-0.0000235,0.0000115,-2.049137388,0.041290158,loss,ns,-0.00002,0.0000195,-1.023598656,0.306822973,neg,ns,-0.019979383,0.005718974,-3.49352583,0.000546073,neg,ns,3.262749496,0.00023444,0.000196675,1.19201673,0.234166393,pos,ns,0.694923566,Gpat3,Gpat3_Intergenic_downstream,5,101032123,101032172,101032123,101032124,50,+,CGGCCCCCGTCTGAACTTCCTAGTCATTTGCCATTTCATTAGCTGCAAGG,Distal Intergenic,5,100846417,100846850,434,1,Gpat3-205,185706,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,15,15,231510,ENSMUSG00000029314,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
66,cg06601257,-0.0000259,0.00000571,-4.535617492,0.00000822,loss,ns,-0.00000993,0.00000971,-1.023462355,0.306887279,neg,ns,-0.000949723,0.002843739,-0.333969739,0.738628201,neg,ns,0.131574115,-0.0000593,0.0000978,-0.606198644,0.544826478,neg,ns,0.856687698,Gm20695,Gm20695_Exon,16,3894420,3894469,3894420,3894421,50,-,CGCCTCCTCTGCCACGATGACATAGACACTGTGAAGCACCTGTGTGGCGA,"Exon (Naa60-207/Naa60, exon 2 of 5)",16,3884648,3919517,34870,1,Gm20695-202,9772,1700037C18Rik-206;1700037C18Rik-201;Gm20695-202;Gm20695-201;Naa60-207;Naa60-210;Naa60-202;Naa60-204;Naa60-211;Naa60-205;Naa60-203;Naa60-201;Naa60-208;Naa60-209;Naa60-206,1700037C18Rik;1700037C18Rik;Gm20695;Gm20695;Naa60;Naa60;Naa60;Naa60;Naa60;Naa60;Naa60;Naa60;Naa60;Naa60;Naa60,14184;13288;0;-3764;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
23101,cg05827187,0.0000416,0.0000113,3.676178713,0.000278941,gain,ns,-0.0000197,0.0000192,-1.023437709,0.306898908,neg,ns,0.00222864,0.005625969,0.396134453,0.692278358,pos,ns,0.159719245,0.000198043,0.000193477,1.023603458,0.306820707,pos,ns,0.767380795,Rnf220,Rnf220_Intron,4,117302433,117302482,117302433,117302434,50,-,CGGGAATAAACCATCATCACCAGCCGCCTTTGTAAGTTACACTTCGTTTT,"Intron (Rnf220-201/Rnf220, intron 3 of 14)",4,117271463,117497052,225590,2,Rnf220-201,194570,Rnf220-201;Rnf220-202;Rnf220-208;Rnf220-207,Rnf220;Rnf220;Rnf220;Rnf220,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26989,cg01648457,-0.00000559,0.00000587,-0.953125783,0.341268924,loss,ns,-0.0000102,0.00000997,-1.023244502,0.30699008,neg,ns,0.003419061,0.002919892,1.170954619,0.242516309,pos,ns,0.61525905,-0.000329366,0.000100415,-3.280047749,0.001156091,neg,ns,0.907358396,Ccnl2,Ccnl2_Exon,4,155817928,155817977,155817928,155817929,50,-,CGTTATGTACCTTCAGGTGTTAGAGTGTGAGCGTAACCAACACCTGGTCC,"Exon (Ccnl2-201/Ccnl2, exon 5 of 11)",4,155812489,155824543,12055,1,Ccnl2-201,5439,Ccnl2-201;Ccnl2-205;Ccnl2-203;Ccnl2-204;Ccnl2-202,Ccnl2;Ccnl2;Ccnl2;Ccnl2;Ccnl2,0;0;0;5150;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,56036,ENSMUSG00000029068,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13668,cg25005357.1,-0.00000368,0.00000404,-0.911904957,0.362527335,loss,ns,0.00000702,0.00000686,1.023218898,0.307002163,pos,ns,-0.001667407,0.002009496,-0.829763767,0.407310865,neg,ns,0.390074005,-0.0000499,0.0000691,-0.721817398,0.470950841,neg,ns,0.910275888,Tcf12,Tcf12_Intron,9,71975247,71975296,71975295,71975296,50,+,TCAAATTCCAGTCAAGGTACAAGTAGAGCAGAACTTCATTTCAGCCCCCG,"Intron (Tcf12-202/Tcf12, intron 5 of 20)",9,71842688,72111847,269160,2,Tcf12-202,136551,Tcf12-202;Tcf12-201;Tcf12-220;Tcf12-221;Tcf12-218;Tcf12-216;Tcf12-208;Tcf12-210;Tcf12-214;Tcf12-205;Tcf12-203;Tcf12-211;Tcf12-204;Tcf12-212,Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,12,21406,ENSMUSG00000032228,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12673,cg19269352,0.000169045,0.0000178,9.482760225,6.76E-19,gain,yes,-0.000031,0.0000303,-1.023173483,0.307023597,neg,ns,0.034798122,0.008872457,3.922038815,0.00010815,pos,ns,3.965973992,-0.000998317,0.000305123,-3.271848983,0.001188976,neg,ns,0.125822395,Shisa6,Shisa6_Exon,11,66525553,66525602,66525601,66525602,50,-,TCTTGCAGCAGAAGCGGTAGTAGCAGGTACCGCAGCAGTACAGGTAGCCG,Promoter (<=1kb),11,66211725,66525795,314071,2,Shisa6-202,193,Shisa6-202;Shisa6-201,Shisa6;Shisa6,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,4,380702,ENSMUSG00000053930,conserved gene and region,11,66525155,66526797,1643,*,1643,221,0.734023128,1.010348263,0.134510043,7.10E-199,CpGisland,TRUE,NA,NRS
10284,cg19859330,-0.00000574,0.0000025,-2.29394936,0.022461952,loss,ns,0.00000435,0.00000425,1.023111046,0.307053066,pos,ns,0.002064713,0.001245996,1.657077768,0.098515414,pos,ns,1.006495813,-0.0000936,0.0000428,-2.183421445,0.029754356,neg,ns,0.92996618,Smc2,Smc2_Exon,4,52486541,52486590,52486541,52486542,50,+,CGTTCTTTTCAAAACCAAGTTTGTGGATGGTGTTTCTACAGTAGCCAGAT,"Exon (Smc2-201/Smc2, exon 25 of 25)",4,52439243,52488260,49018,1,Smc2-201,47298,Smc2-201;Smc2-202,Smc2;Smc2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,14211,ENSMUSG00000028312,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23724,cg05110733,0.000055,0.00000947,5.808131944,1.57E-08,gain,yes,-0.0000165,0.0000161,-1.023016987,0.307097464,neg,ns,0.008929932,0.004712171,1.895077957,0.059012292,pos,ns,1.229057516,-0.000586896,0.000162051,-3.621671559,0.000341841,neg,ns,0.28783176,Rbm19,Rbm19_Intergenic_downstream,5,120231858,120231907,120231906,120231907,50,-,AAGTGTGAAGACAATAATGCAATCTGACATTTCTGAAACAAGACCCCCCG,Distal Intergenic,5,120175725,120197969,22245,1,Rbm19-210,56182,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,12,13,74111,ENSMUSG00000029594,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
14300,cg06813829,-0.00000596,0.00000383,-1.555406691,0.12086953,loss,ns,0.00000666,0.00000651,1.022971055,0.307119146,pos,ns,-0.001474299,0.001908435,-0.772517026,0.440396833,neg,ns,0.356155813,0.0000276,0.0000656,0.420558609,0.674368806,pos,ns,0.929918674,Kcnh5,Kcnh5_Exon,12,75114448,75114497,75114448,75114449,50,-,CGGTGTAGAAGGTAAGAATTAAAATCACCCAATCCCAAGTAGTTTTAAAA,"Exon (Kcnh5-201/Kcnh5, exon 6 of 11)",12,74897220,75177332,280113,2,Kcnh5-201,62835,Kcnh5-201,Kcnh5,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,238271,ENSMUSG00000034402,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2328,cg23632380,0.00000337,0.00000208,1.617625719,0.106760307,gain,ns,-0.00000362,0.00000353,-1.022815734,0.307192474,neg,ns,0.001204584,0.001035627,1.163144217,0.245665536,pos,ns,0.609655765,-0.0000772,0.0000356,-2.166522436,0.031032926,neg,ns,0.038194357,Meis1,Meis1_fiveUTR,11,19018851,19018900,19018899,19018900,50,-,AAAATGTCTGTCTGAGTTTGTCTTAAAGGAGCCACGATCGATGCTGCCCG,Promoter (<=1kb),11,18879817,19018985,139169,2,Meis1-206,85,Meis1-206;Meis1-202;Meis1-209;Meis1-201;Meis1-208;Meis1-207;Meis1-204;Meis1-205,Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,7,88,17268,ENSMUSG00000020160,conserved gene and region,11,19018885,19019116,232,*,232,18,0.590517241,0.911392405,0.077586207,4.67E-12,CpGisland,TRUE,U1,Pr-A
1667,cg18113940,-0.00000136,0.000000786,-1.734454443,0.083831503,loss,ns,-0.00000137,0.00000134,-1.0225025,0.307340388,neg,ns,-0.00000675,0.000391157,-0.017262276,0.986238485,neg,ns,0.006018054,-0.0000179,0.0000135,-1.329613359,0.184623245,neg,ns,0.974878615,Hivep2,Hivep2_threeUTR,10,14150495,14150544,14150495,14150496,50,-,CGTAAAGCATTAAAGTAAACAATGTGCTATTGTGAGTTTTTTCAAAGCTT,3' UTR,10,13966075,14150589,184515,1,Hivep2-204,184420,Hivep2-204;Hivep2-201;Hivep2-205,Hivep2;Hivep2;Hivep2,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,9,15273,ENSMUSG00000015501,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11719,cg10141883,0.00000813,0.00000171,4.761861713,0.00000295,gain,ns,-0.00000297,0.0000029,-1.022454979,0.307362833,neg,ns,0.001858225,0.000849657,2.18703014,0.0294873,pos,ns,1.530364989,-0.0000661,0.0000292,-2.261686406,0.024409251,neg,ns,0.957173758,Gm49336,Gm49336_Exon,14,60223326,60223375,60223374,60223375,50,-,TTGAAGAACCTAAGCCACTTGATTGCAAGCCAGTGCCAATACCTGAGCCG,"Exon (Nupl1-201/Nupl1, exon 13 of 16)",14,60205282,60251479,46198,2,Gm49336-206,28104,Gm49336-206;Gm49336-201;Gm49336-205;Gm49336-203;Gm49336-202;Nupl1-201,Gm49336;Gm49336;Gm49336;Gm49336;Gm49336;Nupl1,0;0;0;0;8762;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9007,cg27300579,0.000000317,0.00000408,0.077670533,0.938140242,gain,ns,0.0000071,0.00000694,1.022449594,0.307365376,pos,ns,0.003532484,0.002033135,1.737456814,0.083299723,pos,ns,1.079356443,-0.000139241,0.0000699,-1.991449119,0.047308806,neg,ns,0.901337573,4931429L15Rik,4931429L15Rik_Intergenic_upstream,9,46510198,46510247,46510246,46510247,50,+,AATTAAAAGAGTTTAGGTTCCCAAGCATAATGATCATCAATTAAACGCCG,Distal Intergenic,9,46303361,46319986,16626,2,4931429L15Rik-201,-190212,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,12,22,74361,ENSMUSG00000056617,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16111,cg21060897,-0.0000636,0.0000124,-5.14498898,0.000000476,loss,yes,0.0000215,0.000021,1.022352206,0.307411377,pos,ns,-0.00839482,0.006154466,-1.364020813,0.173550533,neg,ns,0.760574047,0.000000367,0.000211652,0.001734921,0.99861685,pos,ns,0.73017196,Cyp26b1,Cyp26b1_Intron,6,84417258,84417307,84417258,84417259,50,+,CGTAATTAGGCAAAGTCTCAAGTTCACCGAGAAATAAATCCCAGAGAAAG,"Intron (Gm10445-201/Gm10445-201, intron 3 of 3)",6,84571414,84587680,16267,2,Cyp26b1-205,170373,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,9,232174,ENSMUSG00000063415,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18109,cg05022363,0.000011,0.00000188,5.863169772,1.16E-08,gain,yes,0.00000327,0.0000032,1.022222414,0.30747269,pos,ns,0.002469292,0.000937255,2.634598905,0.008846772,pos,ns,2.053215184,-0.0000197,0.0000322,-0.61234511,0.540758341,neg,ns,0.031730937,Pcdh9,Pcdh9_fiveUTR,14,93890677,93890726,93890725,93890726,50,-,TCTGAACTGAATTTCTTGATATAACTCTCAATAAGCCCAGAGGGAGGGCG,Promoter (<=1kb),14,93886113,93890679,4567,2,Pcdh9-205,0,Pcdh9-208;Pcdh9-204;Pcdh9-202;Pcdh9-207;Pcdh9-201;Pcdh9-206;Pcdh9-203;Pcdh9-205,Pcdh9;Pcdh9;Pcdh9;Pcdh9;Pcdh9;Pcdh9;Pcdh9;Pcdh9,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,10,211712,ENSMUSG00000055421,conserved gene and region,14,93890725,93891077,353,*,353,32,0.694050992,0.756394804,0.090651558,3.23E-23,CpGisland,TRUE,U3,Pr-B
10010,cg27416656,0.000105852,0.0000123,8.60757524,3.82E-16,gain,yes,-0.0000214,0.0000209,-1.022172512,0.307496265,neg,ns,0.024635515,0.006120625,4.024999644,0.0000717,pos,ns,4.144642004,-0.000746704,0.000210488,-3.547494191,0.000449052,neg,ns,0.366167414,Skap2,Skap2_Intergenic_downstream,6,51849115,51849164,51849163,51849164,50,-,CCTCACTTAGGAAAGACGCAAACATAGCATTATTTTGAAATACAGCCTCG,Distal Intergenic,6,51859104,51871929,12826,2,Skap2-207,22814,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,19,54353,ENSMUSG00000059182,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9807,cg17036647,0.000151924,0.00000976,15.56399905,9.22E-41,gain,yes,-0.0000169,0.0000166,-1.022034379,0.307561531,neg,ns,-0.000959915,0.004858266,-0.197583909,0.843500118,neg,ns,0.073914852,0.000604513,0.000167075,3.618205557,0.000346261,pos,ns,0.290676417,Sim1,Sim1_Intron,10,50901922,50901971,50901970,50901971,50,+,TTTCTTGTTTTATAAATCGAAATCTCATTTTCAGGAAATTACAAAACCCG,"Intron (Sim1-201/Sim1, intron 1 of 10)",10,50895651,50989152,93502,1,Sim1-201,6271,Sim1-202;Sim1-201,Sim1;Sim1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,8,20464,ENSMUSG00000019913,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
15926,cg07193181,0.00003,0.000012,2.495007965,0.01311545,gain,ns,-0.0000209,0.0000205,-1.021877084,0.307635862,neg,ns,0.007800568,0.005993056,1.301601106,0.194019209,pos,ns,0.712155271,-0.00032351,0.000206101,-1.569671214,0.117511731,neg,ns,0.695214283,Gm5452,Gm5452_Intergenic_downstream,13,83884910,83884959,83884910,83884911,50,+,CGACACAGCGGGCTCAGACACCACCTATTCTGCTCTCCAAACTGTCATGC,Distal Intergenic,13,83832340,83833336,997,1,Gm5452-201,52570,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,16,432789,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27213,cg19575317,0.000000695,0.00000184,0.378096528,0.705617655,gain,ns,0.00000319,0.00000312,1.021846264,0.307650428,pos,ns,0.003355062,0.000915113,3.666283747,0.000289483,pos,ns,3.538377595,-0.0000811,0.0000315,-2.578289986,0.010390291,neg,ns,0.945316912,Cdkl5,Cdkl5_threeUTR,X,160807488,160807537,160807536,160807537,50,-,CTCACTTCATATCACAAATGTATAAAAATATGGCAGATAGTGTCATAACG,3' UTR,20,160771923,160928488,156566,2,Cdkl5-203,120951,Cdkl5-203;Cdkl5-204;Cdkl5-201;Cdkl5-202;Cdkl5-205,Cdkl5;Cdkl5;Cdkl5;Cdkl5;Cdkl5,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,4,382253,ENSMUSG00000031292,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19738,cg26354934,-0.0000038,0.00000284,-1.338111484,0.18184078,loss,ns,-0.00000493,0.00000483,-1.021827028,0.307659519,neg,ns,-0.001763207,0.00141431,-1.246690327,0.213452229,neg,ns,0.670699306,0.0000634,0.0000486,1.302809624,0.193606696,pos,ns,0.940492957,Cachd1,Cachd1_Exon,4,100974827,100974876,100974875,100974876,50,+,TGGATGACACAAATGGAAATGAGTAGCCTGAACACTTACATTGTCCGCCG,"Exon (Cachd1-201/Cachd1, exon 15 of 27)",4,100776675,101004544,227870,1,Cachd1-201,198152,Cachd1-201;Cachd1-202,Cachd1;Cachd1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,5,320508,ENSMUSG00000028532,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25304,cg17548114,-0.00000591,0.00000228,-2.586657984,0.010146643,loss,ns,0.00000396,0.00000388,1.021747781,0.307696974,pos,ns,-0.002182653,0.001136687,-1.920187866,0.055751523,neg,ns,1.253743266,0.0000363,0.0000391,0.928806586,0.353711969,pos,ns,0.050195748,Kdm5b,Kdm5b_Promoter,1,134561014,134561063,134561062,134561063,50,-,GAAAGTTTTCAATATGGCGGCGGGAGCCCCTGGTCCTTTGTGTGGTGGCG,Promoter (<=1kb),1,134560171,134635285,75115,1,Kdm5b-201,843,Kdm5b-201;Kdm5b-203;Kdm5b-202,Kdm5b;Kdm5b;Kdm5b,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,2,4,75605,ENSMUSG00000042207,conserved gene but different region,1,134560061,134561382,1322,*,1322,138,0.734493192,0.797576266,0.104387292,4.13E-107,CpGisland,TRUE,U1,Pr-A
5384,cg26675657,-0.0000676,0.0000117,-5.777411253,1.85E-08,loss,yes,0.0000203,0.0000199,1.021733368,0.307703786,pos,ns,-0.015389741,0.005827127,-2.641051417,0.008683739,neg,ns,2.061293217,0.000637322,0.000200394,3.180337312,0.001619854,pos,ns,0.718605709,Gm42965,Gm42965_Promoter,5,33692664,33692713,33692664,33692665,50,-,CGAAAGAAAAACTTTGTTTTATTAAAGCAACATCAGGGCTGTGGCCGCCG,Promoter (9-10kb),5,33682725,33682974,250,2,Gm42965-201,-9739,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6165,cg14147790,0.0000456,0.00000509,8.962596045,3.04E-17,gain,yes,-0.00000883,0.00000864,-1.021650412,0.307742998,neg,ns,0.010016404,0.002531439,3.956802627,0.0000942,pos,ns,4.025882874,-0.0000422,0.0000871,-0.48478016,0.628174662,neg,ns,0.101563073,Nrg2,Nrg2_Promoter,18,36197465,36197514,36197513,36197514,50,-,CTGCAGGGGAAGCTTGGGACTGCACTGCTTTAGTGCCCGCCTTCAGCCCG,Promoter (<=1kb),18,36017652,36197380,179729,2,Nrg2-203,-134,Nrg2-203;Nrg2-201,Nrg2;Nrg2,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,20,100042150,ENSMUSG00000060275,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
12606,cg14472560,-0.00000355,0.00000238,-1.494140048,0.136156173,loss,ns,-0.00000413,0.00000404,-1.02164854,0.307743883,neg,ns,-0.001198015,0.001183403,-1.012347561,0.312161387,neg,ns,0.505620818,0.0000205,0.0000407,0.504199093,0.614479634,pos,ns,0.920647869,Zkscan6,Zkscan6_Exon,11,65814651,65814700,65814651,65814652,50,-,CGGAAGCTCTGTTTCCAGTGGCTACAGCCAGAGGTTCACACCAAAGAGCA,"Exon (Zkscan6-202/Zkscan6, exon 2 of 7)",11,65807175,65829238,22064,1,Zkscan6-202,7476,Zkscan6-202;Zkscan6-201,Zkscan6;Zkscan6,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,52712,ENSMUSG00000018347,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23039,cg24771515,-0.000012,0.00000703,-1.703964608,0.089389769,loss,ns,0.0000122,0.0000119,1.021463947,0.307831149,pos,ns,-0.004527905,0.003497238,-1.294708923,0.196384165,neg,ns,0.706893534,0.00010834,0.00012027,0.900811717,0.368387715,pos,ns,0.101060264,Spred1,Spred1_Intron,2,117123179,117123228,117123179,117123180,50,-,CGTGATCGCCTCCATTCATAAAATACCTGGCTGTCCATTCAGAGTGCAGT,"Intron (Spred1-201/Spred1, intron 1 of 6)",2,117121374,117182279,60906,1,Spred1-201,1805,Spred1-201;Spred1-202,Spred1;Spred1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,6,114715,ENSMUSG00000027351,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
23283,cg18807462,0.0000107,0.0000035,3.040598298,0.002562516,gain,ns,0.00000608,0.00000595,1.021451567,0.307837002,pos,ns,0.000469526,0.001743856,0.269246173,0.787919367,pos,ns,0.103518224,0.0000356,0.00006,0.594053218,0.55290977,pos,ns,0.953763042,Eri3,Eri3_Intron,4,117647198,117647247,117647246,117647247,50,+,CACCTTCGAATTGAATTGAGTGTCAGCCGAGAATCTATTACTGAAATTCG,"Intron (Eri3-201/Eri3, intron 7 of 8)",4,117550365,117674297,123933,1,Eri3-201,96833,Eri3-201;Eri3-206;Eri3-203,Eri3;Eri3;Eri3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,82,97,140546,ENSMUSG00000033423,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16179,cg19891121,-0.000000321,0.00000175,-0.18383395,0.85426391,loss,ns,0.00000303,0.00000296,1.021358824,0.307880854,pos,ns,0.001477157,0.000868594,1.700630128,0.090015327,pos,ns,1.045683534,-0.0000826,0.0000299,-2.764936734,0.006034452,neg,ns,0.9554373,Zfp407,Zfp407_Intron,18,84556536,84556585,84556584,84556585,50,+,TTTTCAAATGGCACAAGTGACCAGTGCAAACCTATTTTGCATTGTAAACG,"Intron (Zfp407-201/Zfp407, intron 1 of 2)",18,84128027,84558425,430399,2,Zfp407-201,1840,Zfp407-201;Zfp407-202;Zfp407-204;Zfp407-205,Zfp407;Zfp407;Zfp407;Zfp407,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,32,240476,ENSMUSG00000048410,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11163,cg00442423,-0.00000607,0.00000222,-2.728583262,0.006723699,loss,ns,0.00000386,0.00000378,1.021092872,0.308006624,pos,ns,0.001881292,0.001107043,1.699384682,0.090249883,pos,ns,1.044553352,0.0000119,0.0000381,0.312685965,0.754729501,pos,ns,0.947614292,Marchf3,Marchf3_Exon,18,56807686,56807735,56807686,56807687,50,-,CGCTCGACTGCAAACCTGAAGTGGCAGAGTTCACAGTAGCTGGTGTTTGA,"Exon (Marchf3-202/Marchf3, exon 3 of 5)",18,56761716,56925548,163833,2,Marchf3-202,117813,Marchf3-202;Marchf3-201;Marchf3-203,Marchf3;Marchf3;Marchf3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,7,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26547,cg13597158,0.0000565,0.00000584,9.686874072,1.47E-19,gain,yes,-0.0000101,0.00000991,-1.02094041,0.308078741,neg,ns,0.001308588,0.002904152,0.450592045,0.652598582,pos,ns,0.185353875,0.000014,0.0000999,0.140504724,0.888352471,pos,ns,0.73714028,Casz1,Casz1_Intron,4,148908441,148908490,148908489,148908490,50,-,CCTGTTTAATCATCTCATTTTCTGGTGGCCGTTTATTCCTCGTTTCCACG,"Intron (Casz1-201/Casz1, intron 4 of 15)",4,148804429,148945129,140701,1,Casz1-201,104012,Casz1-201;Casz1-202;Casz1-206,Casz1;Casz1;Casz1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,94,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19932,cg11269793,0.00000532,0.000005,1.063119339,0.288555276,gain,ns,-0.00000867,0.00000849,-1.020926119,0.308085501,neg,ns,-0.006327642,0.002488508,-2.542744829,0.011484557,neg,ns,1.939885734,0.000140001,0.0000856,1.635914284,0.102872379,pos,ns,0.88476977,Ogt,Ogt_Exon,X,101655459,101655508,101655459,101655460,50,-,CGCAAGCGAGCCTATGCTGCAGGGTCACTTTTGGCTGGTCAGAGAAGGAA,"Exon (Ogt-203/Ogt, exon 1 of 17)",20,101640060,101682940,42881,1,Ogt-202,15399,Ogt-202;Ogt-206;Ogt-201;Ogt-205;Ogt-204;Ogt-207;Ogt-203,Ogt;Ogt;Ogt;Ogt;Ogt;Ogt;Ogt,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,32,33,108155,ENSMUSG00000034160,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14585,cg24104699,-0.0000613,0.0000126,-4.887201046,0.00000164,loss,yes,0.0000218,0.0000213,1.0208793,0.308107649,pos,ns,0.001225752,0.006246865,0.196218662,0.844567587,pos,ns,0.07336559,0.0000769,0.000214829,0.357915427,0.720650182,pos,ns,0.854498675,Fkbp7,Fkbp7_Exon,2,76671798,76671847,76671846,76671847,50,+,TGCCCAACACCAAGAACAAACCATTTGGGGTGGCCTTCATTTTGTGTCCG,"Exon (Fkbp7-201/Fkbp7, exon 2 of 4)",2,76663044,76673070,10027,2,Fkbp7-201,1223,Fkbp7-201;Fkbp7-204;Fkbp7-202;Plekha3-201,Fkbp7;Fkbp7;Fkbp7;Plekha3,0;0;0;-3434,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,14231,ENSMUSG00000002732,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
22625,cg02523575,0.0000599,0.00000978,6.122254031,2.79E-09,gain,yes,-0.000017,0.0000166,-1.020652249,0.308215074,neg,ns,0.008945358,0.004866807,1.83803417,0.067014098,pos,ns,1.173833826,-0.000673696,0.000167369,-4.025208775,0.0000716,neg,ns,0.139864175,Pparg,Pparg_Exon,6,115463200,115463249,115463248,115463249,50,+,ATTTGTATGACTCATACATAAAGTCCTTCCCGCTGACCAAAGCAAAGGCG,"Exon (Pparg-202/Pparg, exon 6 of 8)",6,115360951,115490399,129449,1,Pparg-202,102249,Pparg-202;Pparg-204;Pparg-207;Pparg-201;Pparg-205,Pparg;Pparg;Pparg;Pparg;Pparg,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,3,19016,ENSMUSG00000000440,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5752,cg19279496,0.000125526,0.0000149,8.402497252,1.60E-15,gain,yes,-0.0000259,0.0000254,-1.020638169,0.308221736,neg,ns,0.04105219,0.007435354,5.521214997,7.13E-08,pos,ns,7.147127983,-0.000775003,0.000255701,-3.030893207,0.002643843,neg,ns,0.242819502,Kctd15,Kctd15_Exon,7,34652983,34653032,34653031,34653032,50,+,GTGATTAAACTGGCTGAGCTGCGGCAGCTTGAGACGATTTCACTAAATCG,Promoter (<=1kb),7,34652632,34653026,395,2,Kctd15-204,0,Kctd15-202;Kctd15-203;Kctd15-201;Kctd15-206;Kctd15-208;Kctd15-204;Kctd15-205;Kctd15-207,Kctd15;Kctd15;Kctd15;Kctd15;Kctd15;Kctd15;Kctd15;Kctd15,0;0;0;-4239;0;0;0;3700,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,25,233107,ENSMUSG00000030499,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
23563,cg03905052,-0.00001,0.00000357,-2.80803963,0.005300498,loss,ns,0.0000062,0.00000607,1.02054623,0.308265244,pos,ns,-0.0002274,0.001778866,-0.12783444,0.89836288,neg,ns,0.046548201,-0.0000626,0.0000612,-1.022649771,0.307270839,neg,ns,0.906359023,Dpyd,Dpyd_Intron,3,118979167,118979216,118979167,118979168,50,-,CGTTACCCTTTGCAGGTTTTGAGGCAGCTTATTCGACCTTACAGTCTCAC,"Intron (Dpyd-201/Dpyd, intron 12 of 22)",3,118562129,119432924,870796,1,Dpyd-201,417038,Dpyd-201,Dpyd,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,14,29,99586,ENSMUSG00000033308,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3239,cg03909395,0.0000174,0.0000088,1.983131413,0.048234954,gain,ns,-0.0000152,0.0000149,-1.020340856,0.308362444,neg,ns,0.001279123,0.004378114,0.292162899,0.770357508,pos,ns,0.11330768,-0.000097,0.000150563,-0.644196748,0.519924208,neg,ns,0.794397212,Cadps2,Cadps2_Exon,6,23328873,23328922,23328921,23328922,50,-,GCTACATTGGGAAGACTGTTGGCGATATTCCTGTAAAGAAACAAACAACG,"Exon (Cadps2-213/Cadps2, exon 22 of 30)",6,23262773,23839137,576365,2,Cadps2-213,510215,Cadps2-213;Cadps2-205;Cadps2-212;Cadps2-201;Cadps2-209;Cadps2-206;Cadps2-211;Cadps2-207;Cadps2-202,Cadps2;Cadps2;Cadps2;Cadps2;Cadps2;Cadps2;Cadps2;Cadps2;Cadps2,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,15,320405,ENSMUSG00000017978,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22165,cg24542167,-0.0000554,0.00000635,-8.731321034,1.59E-16,loss,yes,0.000011,0.0000108,1.020216417,0.30842135,pos,ns,-0.000857449,0.003159021,-0.271428678,0.786242008,neg,ns,0.104443756,-0.0000397,0.000108638,-0.365125085,0.715267017,neg,ns,0.621316491,Mn1,Mn1_Intergenic_downstream,5,111536149,111536198,111536149,111536150,50,-,CGGTGACAAGGTGTCTGCTAAGTGAGGTAATAGGCAATTGAGTGGGTTCC,Distal Intergenic,5,111417442,111457033,39592,1,Mn1-201,118756,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,12,433938,ENSMUSG00000070576,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20472,cg25799256,0.0000272,0.00000541,5.030599083,0.00000083,gain,yes,-0.00000937,0.00000918,-1.020107862,0.308472742,neg,ns,0.005310499,0.002690149,1.974053867,0.049263127,pos,ns,1.307478027,-0.00015623,0.0000925,-1.688719988,0.092278667,neg,ns,0.017110422,Hoxc4,Hoxc4_Intergenic_downstream,15,103061690,103061739,103061690,103061691,50,-,CGCGTGATTTATGACTTCAGTCTTGGTTCACCAAGAGTTCACACGGCTTT,Distal Intergenic,15,103034395,103036852,2458,1,Hoxc4-201,27344,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,32,91,15423,ENSMUSG00000075394,mapped to different genes,15,103061537,103061809,273,*,273,19,0.586080586,0.8125,0.06959707,7.69E-12,CpGisland,TRUE,U13,Hc-P
20272,cg21114170,0.00000398,0.000000677,5.87735007,1.08E-08,gain,yes,-0.00000117,0.00000115,-1.020006598,0.308520687,neg,ns,0.000176835,0.000337046,0.524660691,0.600194063,pos,ns,0.221708305,-0.00000511,0.0000116,-0.440938261,0.659565041,neg,ns,0.016428513,Hoxc5,Hoxc5_Exon,15,102981693,102981742,102981693,102981694,50,+,CGCTCATCTCTCACGACAATGAAGACCTCCTAGCGTCCAGGTTTCCGGCC,"Exon (Hoxc9-201/Hoxc9, exon 2 of 3)",15,102967443,103015676,48234,1,Hoxc5-202,14250,Hoxc5-202;Hoxc9-202;Hoxc9-201,Hoxc5;Hoxc9;Hoxc9,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,72,134,15424,ENSMUSG00000022485,conserved gene and region,15,102981651,102982178,528,*,528,70,0.696969697,1.109010712,0.132575758,6.92E-63,CpGisland,TRUE,U3,Pr-B
20264,cg12001987,0.0000781,0.0000128,6.121612267,2.80E-09,gain,yes,-0.0000221,0.0000217,-1.019969486,0.30853826,neg,ns,0.013917286,0.006352776,2.190740785,0.029214862,pos,ns,1.534396158,-0.000200246,0.000218471,-0.916579147,0.360075701,neg,ns,0.463522109,Hoxc5,Hoxc5_Intron,15,102975375,102975424,102975423,102975424,50,-,TCGTCTGTGGATATTAAGATGGATTTTTATTTCTTAAAGGACCCTCCCCG,"Intron (Hoxc5-202/Hoxc5, intron 1 of 1)",15,102967443,103015676,48234,1,Hoxc5-202,7932,Hoxc10-201;Hoxc5-202;Hoxc9-202;Hoxc9-201,Hoxc10;Hoxc5;Hoxc9;Hoxc9,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,46,134,15424,ENSMUSG00000022485,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
24138,cg04609342,-0.000000141,0.00000331,-0.042523048,0.966109114,loss,ns,0.00000574,0.00000563,1.019902034,0.308570201,pos,ns,0.00033093,0.001648038,0.200802253,0.84098488,pos,ns,0.075211812,0.0000238,0.0000567,0.420754228,0.674226093,pos,ns,0.897289041,Ankrd11,Ankrd11_threeUTR,8,122900599,122900648,122900647,122900648,50,+,TACCTTTCTTCTTGCTTCTAGGAACCTCCATCTCATGCCATGGTGCTTCG,3' UTR,8,122883822,122974793,90972,2,Ankrd11-203,74145,Ankrd11-203;Ankrd11-202;Ankrd11-201;Ankrd11-206;Ankrd11-205;Galnt2l-201,Ankrd11;Ankrd11;Ankrd11;Ankrd11;Ankrd11;Galnt2l,0;0;0;0;-819;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,1,77087,ENSMUSG00000035569,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14945,cg21925889,0.0000184,0.00000694,2.644268873,0.008603458,gain,ns,0.000012,0.0000118,1.019612936,0.308707123,pos,ns,0.013777342,0.003455532,3.987039066,0.0000835,pos,ns,4.078335453,-0.000121678,0.000118835,-1.023920751,0.306671045,neg,ns,0.36139437,Nr2f1,Nr2f1_Exon,13,78195228,78195277,78195276,78195277,50,+,GCTTCTCCACCTGCTCCTGGAAGATGCGGATGTGGTCCATGAAGGCCACG,"Exon (Nr2f1-201/Nr2f1, exon 2 of 3)",13,78188973,78199757,10785,2,Nr2f1-201,4480,Nr2f1-201;Nr2f1-205;Nr2f1-203;Nr2f1-202;Nr2f1-204;Nr2f1-206,Nr2f1;Nr2f1;Nr2f1;Nr2f1;Nr2f1;Nr2f1,0;0;0;0;-4785;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,25,55,13865,ENSMUSG00000069171,conserved gene and region,13,78194760,78195505,746,*,746,69,0.662198391,0.847266802,0.092493298,5.24E-50,CpGisland,TRUE,U13,Hc-P
1611,cg16821072,-0.00000288,0.00000444,-0.647816085,0.517583396,loss,ns,-0.0000077,0.00000755,-1.019600928,0.308712811,neg,ns,0.001454936,0.002211539,0.657883989,0.511100903,pos,ns,0.291493352,-0.000105351,0.0000761,-1.385202442,0.166986509,neg,ns,0.9011814,Runx1t1,Runx1t1_Exon,4,13846880,13846929,13846928,13846929,50,+,CAGCACCACCTCACCTGTTGACTCCTCAGAGCTGCTTCTCGATGTGAACG,"Exon (Runx1t1-201/Runx1t1, exon 5 of 11)",4,13743436,13893649,150214,1,Runx1t1-201,103444,Runx1t1-201;Runx1t1-206;Runx1t1-204;Runx1t1-203;Runx1t1-202,Runx1t1;Runx1t1;Runx1t1;Runx1t1;Runx1t1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,24,12395,ENSMUSG00000006586,conserved gene and region,4,13846797,13846945,149,*,149,10,0.597315436,0.788359788,0.067114094,0.00000263,CpGisland,TRUE,U15,NS
7074,cg14862397,-0.00000108,0.00000447,-0.241878545,0.809034202,loss,ns,-0.00000774,0.0000076,-1.01959771,0.308714335,neg,ns,-0.004383237,0.002225321,-1.969710354,0.049761597,neg,ns,1.303105694,0.0000679,0.0000765,0.887841194,0.375314508,pos,ns,0.889234037,Zfpm2,Zfpm2_Intron,15,40810482,40810531,40810530,40810531,50,+,GACATGTTGCCGGATCATCATTCCGTTTATCACAGTGCACAGGCTGGCCG,"Intron (Zfpm2-202/Zfpm2, intron 3 of 3)",15,40655035,40872723,217689,1,Zfpm2-202,155447,Zfpm2-202;Zfpm2-201;Zfpm2-203,Zfpm2;Zfpm2;Zfpm2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,41,22762,ENSMUSG00000022306,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6040,cg16997055,0.00000112,0.000000502,2.237738858,0.025948198,gain,ns,-0.00000087,0.000000853,-1.019481203,0.308769527,neg,ns,0.000171341,0.000249879,0.685696345,0.493417073,pos,ns,0.306785828,-0.0000088,0.00000859,-1.024631381,0.306336029,neg,ns,0.014523893,Cxxc5,Cxxc5_Intron,18,35889722,35889771,35889770,35889771,50,-,GCGCAGGCGGGAGGTCGCATCTGCAGCTTTGGCGCAATGAATCAGGCGCG,"Intron (Gm36315-201/Gm36315-201, intron 1 of 1)",18,35854738,35858619,3882,1,Cxxc5-205,35033,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,49,67393,ENSMUSG00000046668,conserved gene and region,18,35889630,35890054,425,*,425,43,0.656470588,0.954108802,0.101176471,3.55E-33,CpGisland,TRUE,U3,Pr-B
15797,cg05057226,-0.0000103,0.0000035,-2.952022163,0.003398047,loss,ns,0.00000606,0.00000595,1.019448948,0.308784808,pos,ns,0.003422902,0.001742806,1.964017384,0.050421363,pos,ns,1.297385422,-0.000236168,0.0000599,-3.940401792,0.000100562,neg,ns,0.098986182,Psip1,Psip1_Exon,4,83485718,83485767,83485718,83485719,50,-,CGAGCTGGCCAATGGGGATAACCTTTCATCTTGGCGAAGATGAGGTCTCC,Promoter (<=1kb),4,83455680,83486459,30780,2,Psip1-201,692,Psip1-201;Psip1-202;Psip1-203;Psip1-205,Psip1;Psip1;Psip1;Psip1,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,101739,ENSMUSG00000028484,conserved gene and region,4,83485621,83486528,908,*,908,113,0.731277533,0.938025104,0.124449339,1.49E-97,CpGisland,TRUE,U1,Pr-A
3743,cg10227148,0.0000263,0.00000605,4.354212473,0.0000182,gain,ns,0.0000105,0.0000103,1.019419154,0.308798924,pos,ns,0.009627911,0.003011244,3.197319921,0.001530321,pos,ns,2.815217581,-0.00024783,0.000103556,-2.393184124,0.017297503,neg,ns,0.098472121,Adgrb3,Adgrb3_fiveUTR,1,25228495,25228544,25228495,25228496,50,-,CGGTAAGCACAGTTTTACATCCCTGGGTGGACCACGTTCCCAAAGACTCG,Promoter (<=1kb),1,25067476,25228826,161351,2,Adgrb3-203,282,Adgrb3-203;Adgrb3-206;Adgrb3-205;Adgrb3-207;Adgrb3-201;Adgrb3-208;Adgrb3-202;Adgrb3-204;Gm15702-201,Adgrb3;Adgrb3;Adgrb3;Adgrb3;Adgrb3;Adgrb3;Adgrb3;Adgrb3;Gm15702,0;0;0;0;0;0;0;0;4765,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,7,25,210933,ENSMUSG00000033569,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2150,cg12426907,0.00000321,0.00000271,1.184215754,0.237234843,gain,ns,-0.0000047,0.00000461,-1.019401561,0.30880726,neg,ns,0.000842071,0.001350992,0.623298485,0.533546697,pos,ns,0.272827564,-0.0000619,0.0000465,-1.332775092,0.183584351,neg,ns,0.936788308,Reps1,Reps1_Exon,10,18094511,18094560,18094559,18094560,50,-,AAGACAGTATTATGTAAATCAGTTTAAAACCATTCAGCCTGATCTAAACG,Promoter (<=1kb),10,18094531,18117734,23204,1,Reps1-208,0,Reps1-206;Reps1-207;Reps1-201;Reps1-210;Reps1-211;Reps1-204;Reps1-202;Reps1-209;Reps1-208,Reps1;Reps1;Reps1;Reps1;Reps1;Reps1;Reps1;Reps1;Reps1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,19707,ENSMUSG00000019854,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18850,cg11023891,-0.00000255,0.00000252,-1.011127097,0.312744148,loss,ns,-0.00000436,0.00000428,-1.019334837,0.308838874,neg,ns,0.0000927,0.001254501,0.073874761,0.941157683,pos,ns,0.026337608,0.000000751,0.0000431,0.017407127,0.986123022,pos,ns,0.982282921,Ppip5k2,Ppip5k2_Exon,1,97716556,97716605,97716556,97716557,50,+,CGAGCAAATGAGATAGAAAACCTTTTAACAGCAGAACCGCGTGTGGCGTC,"Exon (Ppip5k2-202/Ppip5k2, exon 28 of 31)",1,97706048,97770411,64364,2,Ppip5k2-201,53806,Ppip5k2-203;Ppip5k2-201;Ppip5k2-202;Ppip5k2-205;Ppip5k2-207;Ppip5k2-206,Ppip5k2;Ppip5k2;Ppip5k2;Ppip5k2;Ppip5k2;Ppip5k2,-1407;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,10,227399,ENSMUSG00000040648,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25894,cg11223267,0.0000914,0.0000174,5.250149713,0.000000283,gain,yes,-0.0000301,0.0000296,-1.019069946,0.308964401,neg,ns,0.029093644,0.008666467,3.357036283,0.000885968,pos,ns,3.052581938,-0.000647165,0.000298039,-2.171411035,0.030658274,neg,ns,0.450748402,Gm50453,Gm50453_Promoter,4,140452637,140452686,140452685,140452686,50,-,TCAATAAACCATTCAAACATGCAATAAACCAAGCCATTAAAAATTAATCG,Promoter (6-7kb),4,140445846,140446164,319,2,Gm50453-201,-6522,NA,NA,NA,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,2,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5096,cg04777732,0.0000563,0.00000812,6.931231144,2.43E-11,gain,yes,-0.0000141,0.0000138,-1.019019116,0.308988493,neg,ns,0.01500754,0.004039869,3.714858269,0.000241101,pos,ns,3.617800611,-0.000557538,0.000138931,-4.013061367,0.0000752,neg,ns,0.063774184,Bach2,Bach2_Intron,4,32303846,32303895,32303894,32303895,50,-,TTCCTTTTATTTTTAGCCAAATCCGTCAGGCCTGACAGGCGGGTAATTCG,"Intron (Bach2-202/Bach2, intron 1 of 6)",4,32238804,32586104,347301,1,Bach2-202,65042,Bach2-202;Bach2-201;Bach2-205;Bach2-206,Bach2;Bach2;Bach2;Bach2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,14,12014,ENSMUSG00000040270,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15326,cg25244980,-0.0000129,0.00000632,-2.045513893,0.041648022,loss,ns,0.0000109,0.0000107,1.018942136,0.309024981,pos,ns,-0.000714743,0.003146182,-0.227177781,0.820435248,neg,ns,0.08595569,-0.000122975,0.000108197,-1.136581128,0.256591263,neg,ns,0.567400186,Cacna1i,Cacna1i_Exon,15,80358771,80358820,80358819,80358820,50,+,CTCCCGTTGGTCACAGGTGGGCTCCTTCTTCATGATCAACCTGTGCCTCG,"Exon (Cacna1i-202/Cacna1i, exon 9 of 37)",15,80287238,80398279,111042,1,Cacna1i-202,71533,Cacna1i-202;Cacna1i-205,Cacna1i;Cacna1i,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,11,239556,ENSMUSG00000022416,conserved gene and region,15,80358819,80358934,116,*,116,11,0.646551724,0.911428571,0.094827586,0.000000019,CpGisland,TRUE,U15,NS
25587,cg05150932,0.000175243,0.000013,13.46238054,7.61E-33,gain,yes,-0.0000225,0.0000221,-1.018894184,0.309047712,neg,ns,0.016484531,0.006478804,2.544378853,0.011432084,pos,ns,1.941874609,-0.000273645,0.000222806,-1.228176557,0.220312349,neg,ns,0.489139871,Ebf3,Ebf3_Intron,7,137266587,137266636,137266587,137266588,50,-,CGCTCTGGAAACAATTACTCCTGGAAGGCCTGTCAATATCATTATTTTTA,"Intron (Ebf3-204/Ebf3, intron 6 of 15)",7,137193673,137314445,120773,2,Ebf3-204,47809,Ebf3-204;Ebf3-201;Ebf3-202;Ebf3-203;Ebf3-208;Ebf3-205,Ebf3;Ebf3;Ebf3;Ebf3;Ebf3;Ebf3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,62,84,13593,ENSMUSG00000010476,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20880,cg11219078,0.00000595,0.000000738,8.060826124,1.66E-14,gain,yes,-0.00000128,0.00000125,-1.018785217,0.309099369,neg,ns,0.000721005,0.000367289,1.963043729,0.050534935,pos,ns,1.296408287,-0.00000881,0.0000126,-0.697764493,0.485847501,neg,ns,0.013999605,Pax6,Pax6_Exon,2,105682274,105682323,105682274,105682275,50,-,CGTGACGATGCAATTTCCCGGAGCGGAGCACTGTCACAAAGTGACAAGGC,"Exon (Pax6-221/Pax6, exon 1 of 2)",2,105668900,105697364,28465,1,Pax6-206,13374,Pax6-206;Pax6-207;Pax6-210;Pax6-214;Pax6-208;Pax6-202;Pax6-205;Pax6-225;Pax6-204;Pax6-201;Pax6-203;Pax6-224;Pax6-219;Pax6-221;Pax6-213;Pax6-211;Pax6-222;Pax6-212;Pax6-215;Pax6-223;Pax6-209;Pax6-216,Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,31,78,18508,ENSMUSG00000027168,conserved gene and region,2,105682176,105682419,244,*,244,18,0.524590164,1.074626866,0.073770492,1.12E-11,CpGisland,TRUE,NA,NRS
6322,cg07356745.1,-0.00000991,0.00000348,-2.844679703,0.004741361,loss,ns,0.00000603,0.00000592,1.018744788,0.309118536,pos,ns,0.002450874,0.001734432,1.413070214,0.158638334,pos,ns,0.79959186,-0.000144145,0.0000596,-2.416632268,0.016242113,neg,ns,0.915459478,Ccser2,Ccser2_Exon,14,36890320,36890369,36890368,36890369,50,+,GGAGTGAGAGACACAGACTCACTCTGTCTGCGGTGCGGTGGAACAGTCCG,"Exon (Ccser2-202/Ccser2, exon 10 of 11)",14,36874936,36968687,93752,2,Ccser2-201,78318,Ccser2-201;Ccser2-202;Ccser2-208;Ccser2-209;Ccser2-210;Ccser2-207;Ccser2-203;Ccser2-205;Ccser2-204,Ccser2;Ccser2;Ccser2;Ccser2;Ccser2;Ccser2;Ccser2;Ccser2;Ccser2,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,72972,ENSMUSG00000058690,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5928,cg16337006,0.0000127,0.0000091,1.390412629,0.165401014,gain,ns,0.0000157,0.0000155,1.018738946,0.309121305,pos,ns,0.013827589,0.004529023,3.053106653,0.002461089,pos,ns,2.60887275,-0.000230912,0.000155753,-1.482555088,0.139208505,neg,ns,0.223027334,Osr2,Osr2_threeUTR,15,35302855,35302904,35302903,35302904,50,+,TGTTCAGGCGAAACTGTGATCTGCGGCGGCACAGCCTGACTCACACCCCG,3' UTR,15,35296098,35303304,7207,1,Osr2-203,6757,Osr2-203;Osr2-201;Osr2-205;Osr2-204,Osr2;Osr2;Osr2;Osr2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,6,107587,ENSMUSG00000022330,conserved gene and region,15,35302838,35302979,142,*,142,12,0.654929578,0.815311005,0.084507042,1.33E-08,CpGisland,TRUE,NA,NRS
19201,cg18955753,-0.00000251,0.00000166,-1.516607356,0.130384888,loss,ns,0.00000287,0.00000282,1.01873413,0.309123589,pos,ns,0.000988936,0.000824702,1.199143781,0.231387821,pos,ns,0.635659503,0.00000577,0.0000284,0.20358791,0.838809117,pos,ns,0.032390888,Nr1d1,Nr1d1_fiveUTR,11,98775327,98775376,98775327,98775328,50,+,CGGCACTGGAGCAGGTACCATGTGATCCCAGGGAGCGCCTCGTGCCCCAG,Promoter (<=1kb),11,98767932,98775333,7402,2,Nr1d1-201,0,Nr1d1-201;Nr1d1-202,Nr1d1;Nr1d1,0;-4901,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,9,217166,ENSMUSG00000020889,conserved gene but different region,11,98775184,98775428,245,*,245,18,0.624489796,0.760869565,0.073469388,1.20E-11,CpGisland,TRUE,U6,En-Sp
3395,cg16261691,-0.000000303,0.00000124,-0.243647588,0.807664927,loss,ns,0.00000215,0.00000211,1.018652015,0.309162522,pos,ns,0.000405997,0.000618766,0.656139214,0.512221263,pos,ns,0.290542397,-0.00000128,0.0000213,-0.05995759,0.952228045,neg,ns,0.028615771,Bcl6,Bcl6_Promoter,16,23988950,23988999,23988950,23988951,50,-,CGGCCTCTGGAATTCTGAGAACTAATTTGCTATTCGGTGACATAAGAGGG,Promoter (<=1kb),16,23965052,23988852,23801,2,Bcl6-201,-147,Bcl6-201;Gm37419-201,Bcl6;Gm37419,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,7,18,12053,ENSMUSG00000022508,conserved gene but different region,16,23988657,23989142,486,*,486,53,0.639917696,1.065348664,0.109053498,1.22E-42,CpGisland,TRUE,U1,Pr-A
26949,cg04557908,-0.0000575,0.0000125,-4.596137493,0.00000627,loss,ns,-0.0000217,0.0000213,-1.018624059,0.309175778,neg,ns,-0.023282043,0.006231875,-3.735961362,0.000222552,neg,ns,3.652567937,0.00049685,0.000214314,2.318333369,0.021081601,pos,ns,0.689184241,Ski,Ski_Intergenic_upstream,4,155235399,155235448,155235447,155235448,50,+,TTTTGGGTTTGCTATTTTTACCCACCCTGAGCCTTCCGGTCTCCATGGCG,Distal Intergenic,4,155154075,155222592,68518,2,Ski-201,-12807,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,8,20481,ENSMUSG00000029050,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
26026,cg21091297,-0.0000172,0.00000664,-2.584278789,0.010215392,loss,ns,0.0000115,0.0000113,1.018031869,0.309456658,pos,ns,0.003455415,0.003306534,1.04502617,0.296825056,pos,ns,0.527499441,-0.000152135,0.000113711,-1.337903415,0.181908531,neg,ns,0.802937114,Etnk1,Etnk1_Intron,6,143192932,143192981,143192932,143192933,50,+,CGCATCACTTGTTCACATGCACGGAGCCTGGTAACAGCCTCATCTGTATC,"Intron (Etnk1-203/Etnk1, intron 4 of 7)",6,143167221,143218497,51277,1,Etnk1-203,25711,Etnk1-203;Etnk1-201;Etnk1-202;Etnk1-204,Etnk1;Etnk1;Etnk1;Etnk1,0;0;25678;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,10,75320,ENSMUSG00000030275,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
23102,cg14668921,0.0000799,0.0000131,6.083007426,3.47E-09,gain,yes,-0.0000227,0.0000223,-1.017986864,0.309478012,neg,ns,0.008170016,0.006535165,1.250162167,0.212183205,pos,ns,0.673288995,0.0000399,0.000224744,0.177333208,0.859362478,pos,ns,0.74525153,Rnf220,Rnf220_Intron,4,117302457,117302506,117302457,117302458,50,+,CGCCTTTGTAAGTTACACTTCGTTTTAATCTATTTGGGGAATTGTTTATC,"Intron (Rnf220-201/Rnf220, intron 3 of 14)",4,117271463,117497052,225590,2,Rnf220-201,194546,Rnf220-201;Rnf220-202;Rnf220-208;Rnf220-207,Rnf220;Rnf220;Rnf220;Rnf220,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5445,cg20595453,0.0000127,0.000011,1.156041466,0.248554354,gain,ns,-0.0000191,0.0000187,-1.017755972,0.309587576,neg,ns,0.031420078,0.005488308,5.724911506,2.44E-08,pos,ns,7.611930508,-0.001125833,0.000188742,-5.964914084,6.67E-09,neg,yes,0.506381895,Vps52,Vps52_Exon,17,33965681,33965730,33965681,33965682,50,-,CGTGGCTTTGGTAGTTCCTGGAAATCATCAGTGGAATCTCTGAGTCAGGA,"Exon (Vps52-201/Vps52, exon 19 of 20)",17,33955812,33967035,11224,1,Vps52-201,9869,Vps52-201;Vps52-203;Vps52-202;Vps52-207,Vps52;Vps52;Vps52;Vps52,0;0;0;3933,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,224705,ENSMUSG00000024319,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2833,cg13153497,0.0000943,0.00000788,11.97684768,2.01E-27,gain,yes,-0.0000136,0.0000134,-1.017574167,0.309673866,neg,ns,0.012820694,0.003920048,3.270544828,0.001194287,pos,ns,2.922891441,-0.0000628,0.00013481,-0.466181856,0.641412735,neg,ns,0.169586607,Faxc,Faxc_Exon,4,21931799,21931848,21931799,21931800,50,+,CGTATCTGCTCCACGAACTCCTGGTCATTAGGTGAGCCGGAGAGAGGGCC,Promoter (<=1kb),4,21931329,21994146,62818,1,Faxc-204,470,Faxc-204;Faxc-201;Faxc-202;Faxc-203,Faxc;Faxc;Faxc;Faxc,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,76132,ENSMUSG00000028246,conserved gene and region,4,21931002,21931985,984,*,984,98,0.706300813,0.798767457,0.099593496,4.26E-74,CpGisland,TRUE,U3,Pr-B
27586,cg03991667,0.000109692,0.0000188,5.831229415,1.38E-08,gain,yes,-0.0000325,0.000032,-1.017542162,0.309689058,neg,ns,-0.002367602,0.009362461,-0.252882456,0.800526652,neg,ns,0.096624205,0.0000425,0.000321974,0.132138639,0.894960357,pos,ns,0.374586225,Zfp217,Zfp217_Intergenic_downstream,2,170088127,170088176,170088175,170088176,50,-,CAGGGTAGATAATGTCAAATATTTACAGAGCAAACATCATTCTAGAGGCG,Distal Intergenic,2,170120333,170131220,10888,2,Zfp217-204,43093,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,4,228913,ENSMUSG00000052056,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19347,cg19450480,-0.0000239,0.00000618,-3.860356605,0.000137808,loss,ns,0.0000107,0.0000105,1.017495715,0.309711107,pos,ns,-0.002796649,0.003075923,-0.909206682,0.363947363,neg,ns,0.438961423,-0.0000366,0.000105781,-0.346183025,0.729440007,neg,ns,0.746360756,Stard8,Stard8_Exon,X,99073102,99073151,99073150,99073151,50,+,TACAACAAAGTCTTTGGACACCTGTGTGCCATGGAAGTGGCAAAGATCCG,"Exon (Stard8-201/Stard8, exon 14 of 14)",20,99042581,99074728,32148,1,Stard8-201,30521,Stard8-201;Stard8-202,Stard8;Stard8,0;4494,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,236920,ENSMUSG00000031216,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23749,cg21473984,0.0000437,0.0000132,3.300152124,0.001078994,gain,ns,0.0000229,0.0000225,1.017431597,0.309741545,pos,ns,0.015376668,0.006586693,2.334505088,0.020207626,pos,ns,1.694484712,-0.00045913,0.000226516,-2.026923045,0.043525861,neg,ns,0.148298858,Foxo6,Foxo6_Exon,4,120268241,120268290,120268289,120268290,50,+,GGGCAGCGTCATAAGGCTGATGGGGTGGGCTAAGGCACTGCGCGAGGGCG,"Exon (Foxo6-201/Foxo6, exon 2 of 2)",4,120267079,120287349,20271,2,Foxo6-201,19059,Foxo6-201,Foxo6,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,42,329934,ENSMUSG00000052135,conserved gene and region,4,120267816,120268457,642,*,642,80,0.758566978,0.881928704,0.124610592,2.71E-69,CpGisland,TRUE,NA,NRS
24720,cg04957596,-0.0000115,0.00000541,-2.130409137,0.033924866,loss,ns,-0.00000936,0.0000092,-1.017392617,0.309760051,neg,ns,-0.002770243,0.002694899,-1.027957911,0.304771025,neg,ns,0.516026325,0.0000466,0.0000927,0.502983694,0.615332899,pos,ns,0.909788658,Stx1b,Stx1b_threeUTR,7,127807339,127807388,127807339,127807340,50,-,CGCCAAGACCACCCCCAGCACCACACAGCAAATGATGATCATGATTTTCT,3' UTR,7,127803900,127824549,20650,2,Stx1b-201,17161,Gm49388-202;Hsd3b7-201;Hsd3b7-206;Hsd3b7-210;Hsd3b7-212;Hsd3b7-203;Hsd3b7-202;Stx1b-201;Stx1b-202,Gm49388;Hsd3b7;Hsd3b7;Hsd3b7;Hsd3b7;Hsd3b7;Hsd3b7;Stx1b;Stx1b,0;6735;6735;6735;6725;6725;6423;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,56216,ENSMUSG00000030806,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23922,cg19249420,0.00005,0.0000115,4.349899843,0.0000185,gain,ns,0.0000199,0.0000195,1.017385119,0.30976361,pos,ns,0.019665799,0.005724177,3.435567717,0.000671918,pos,ns,3.172683407,-0.0000931,0.000196854,-0.47280734,0.636683349,neg,ns,0.192950344,Galnt2l,Galnt2l_Intron,8,121127642,121127691,121127642,121127643,50,+,CGATTGGCTGGTATCAAAAAGACACGTGGAGGGAAAAGCTTGGAGTTTTT,"Intron (Galnt2l-201/Galnt2l, intron 1 of 15)",8,119910841,124345722,4434882,1,Galnt2l-201,1216801,Foxl1-201;Galnt2l-201,Foxl1;Galnt2l,-249;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,28,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
18901,cg06663517,0.000000242,0.00000198,0.122317649,0.902726711,gain,ns,0.00000342,0.00000336,1.017382592,0.30976481,pos,ns,-0.000443715,0.000984254,-0.450813211,0.652439335,neg,ns,0.185459864,0.0000195,0.0000338,0.576521856,0.564680864,pos,ns,0.951917014,Dach1,Dach1_Intron,14,97868354,97868403,97868354,97868355,50,+,CGAAGGTGAAAAGGATAATCAGTACAGTCACTGGTCCGTGTTTCCTAAAC,"Intron (Dach1-201/Dach1, intron 6 of 10)",14,97786853,98169543,382691,2,Dach1-201,301140,Dach1-201;Dach1-202;Dach1-203,Dach1;Dach1;Dach1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,76,13134,ENSMUSG00000055639,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23076,cg24317827,0.0000824,0.0000123,6.67616501,1.13E-10,gain,yes,-0.0000213,0.000021,-1.017309781,0.30979938,neg,ns,0.0261725,0.006141878,4.261318656,0.000027,pos,ns,4.568736954,-0.000625994,0.000211219,-2.963723988,0.003274933,neg,ns,0.483354841,Rnf220,Rnf220_Intron,4,117281257,117281306,117281257,117281258,50,+,CGATGCGGGACAATCAATCGGCCTGCAGTGTCACCTGCCACCTCGCTGAA,"Intron (Rnf220-201/Rnf220, intron 8 of 14)",4,117271463,117497052,225590,2,Rnf220-201,215746,Rnf220-201;Rnf220-203;Rnf220-212;Rnf220-202;Rnf220-205;Rnf220-209;Rnf220-213;Rnf220-210;Rnf220-206;Rnf220-208,Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24310,cg00243488,-0.000166862,0.0000124,-13.5067284,5.21E-33,loss,yes,0.0000213,0.000021,1.017190619,0.309855961,pos,ns,0.025672231,0.006148701,4.175228149,0.0000387,pos,ns,4.411991787,-0.001163188,0.000211453,-5.500918744,7.92E-08,neg,yes,0.256080488,Pou3f1,Pou3f1_Intron,4,124595073,124595122,124595073,124595074,50,-,CGGGAGTTTGCATAACAGCTCCACCCACCCAACTGAAAGAAATGTCACCG,"Intron (Gm2164-201/Gm2164-201, intron 1 of 1)",4,124656807,124660655,3849,1,Pou3f1-201,-61734,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,43,85,18991,ENSMUSG00000090125,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
19575,cg14043044,0.0000199,0.00000292,6.824917397,4.63E-11,gain,yes,-0.00000505,0.00000496,-1.017039381,0.309927783,neg,ns,0.001565564,0.001453445,1.077139824,0.282255302,pos,ns,0.549357892,0.0000204,0.00005,0.407816226,0.683690103,pos,ns,0.048416433,Sox14,Sox14_Exon,9,99875064,99875113,99875112,99875113,50,+,CCAGGCGGTACAGTTACAGGGCACCACGTAGCCAGGGTTGGTGGGGGACG,"Exon (Sox14-201/Sox14, exon 1 of 1)",9,99874106,99876170,2065,2,Sox14-201,1057,Sox14-201;Sox14-202,Sox14;Sox14,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,18,20669,ENSMUSG00000053747,conserved gene and region,9,99875036,99875212,177,*,177,15,0.694915254,0.771802326,0.084745763,1.11E-10,CpGisland,TRUE,U13,Hc-P
23449,cg24317280,0.000031,0.00000433,7.155048735,6.07E-12,gain,yes,0.00000748,0.00000735,1.016819487,0.310032229,pos,ns,0.005449753,0.002153772,2.530329533,0.01189032,pos,ns,1.924806451,-0.0000662,0.0000741,-0.893167375,0.37246038,neg,ns,0.13679078,Eomes,Eomes_Intron,9,118487637,118487686,118487637,118487638,50,-,CGTAAGTGGCTGAGTGGCCCCAATTAACACCTTATGATAAGGCATTCCTA,"Intron (Gm33460-201/Gm33460-201, intron 2 of 4)",9,118478861,118482757,3897,1,Eomes-203,8825,Eomes-202;Eomes-201;Eomes-203,Eomes;Eomes;Eomes,0;0;8776,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,8,13813,ENSMUSG00000032446,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16208,cg24450847,0.0000702,0.00000621,11.30949256,4.65E-25,gain,yes,-0.0000107,0.0000105,-1.016793727,0.310044466,neg,ns,-0.002641741,0.003089614,-0.855039127,0.393189813,neg,ns,0.405397742,0.00012852,0.000106252,1.209579701,0.227361828,pos,ns,0.081834643,Vsx2,Vsx2_Intron,12,84590511,84590560,84590511,84590512,50,-,CGCTTTAATTTCCCGTGGTATTTCAGTGCCTGAGGCCCATCGATTCAAAC,"Intron (Vsx2-201/Vsx2, intron 3 of 4)",12,84569762,84595457,25696,1,Vsx2-201,20749,Vsx2-201;Vsx2-202,Vsx2;Vsx2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,20,12677,ENSMUSG00000021239,conserved gene and region,12,84590384,84590552,169,*,169,10,0.556213018,0.777726645,0.059171598,0.00000794,CpGisland,TRUE,U4,Pr-F
5999,cg12839840,0.0000676,0.0000199,3.395320876,0.000774723,gain,ns,-0.0000344,0.0000338,-1.016788217,0.310047084,neg,ns,0.016314704,0.009910356,1.646227846,0.100730244,pos,ns,0.996840113,-0.00094945,0.000340816,-2.785810726,0.005668234,neg,ns,0.241750647,Ube2d2a,Ube2d2a_Intron,18,35814829,35814878,35814829,35814830,50,+,CGCCATTGATTGTCCCTGACGAGCTGCTCCACTTTCCAGCCAATGTCAGG,"Intron (Gm50371-201/Gm50371-201, intron 4 of 4)",18,35801307,35809494,8188,1,Ube2d2a-209,13522,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,3,56550,ENSMUSG00000091896,mapped to different genes,18,35814741,35814849,109,*,109,14,0.752293578,0.992843201,0.128440367,1.34E-12,CpGisland,TRUE,U6,En-Sp
24178,cg02981115,0.0000757,0.0000112,6.771241292,6.41E-11,gain,yes,0.0000193,0.000019,1.016662704,0.310106713,pos,ns,0.033815602,0.005561593,6.080200916,3.53E-09,pos,ns,8.45280547,-0.0006293,0.000191263,-3.290240828,0.001116385,neg,ns,0.83719201,Tnrc6a,Tnrc6a_Exon,7,123179787,123179836,123179787,123179788,50,+,CGGGAAAGGCCCTGGTTCTCGGCCTCAGATTTCCAAAGAGTCTTCCATGG,"Exon (Tnrc6a-201/Tnrc6a, exon 12 of 24)",7,123124177,123193987,69811,1,Tnrc6a-203,55610,Tnrc6a-203;Tnrc6a-201;Tnrc6a-210;Tnrc6a-205;Tnrc6a-202;Tnrc6a-207;Tnrc6a-208,Tnrc6a;Tnrc6a;Tnrc6a;Tnrc6a;Tnrc6a;Tnrc6a;Tnrc6a,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,17,24,233833,ENSMUSG00000052707,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3439,cg24770319,0.0000122,0.00000161,7.611308051,3.29E-13,gain,yes,-0.00000278,0.00000273,-1.016561327,0.310154881,neg,ns,-0.0000677,0.000799893,-0.084683528,0.932567654,neg,ns,0.030319652,0.0000234,0.0000275,0.850312033,0.395807888,pos,ns,0.033209987,Bcl11a,Bcl11a_Exon,11,24078395,24078444,24078443,24078444,50,-,CTCGCCGCAAGCAAGGCAAACCCCAGCACTTAAGCAAACGGGAATTCTCG,Promoter (<=1kb),11,24078056,24173194,95139,1,Bcl11a-201,339,A830031A19Rik-201;Bcl11a-201;Bcl11a-203;Bcl11a-205;Bcl11a-202;Bcl11a-204,A830031A19Rik;Bcl11a;Bcl11a;Bcl11a;Bcl11a;Bcl11a,0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,51,98,14025,ENSMUSG00000000861,conserved gene and region,11,24078318,24078446,129,*,129,20,0.705426357,1.347962382,0.15503876,8.63E-20,CpGisland,TRUE,NA,NRS
14496,cg13366102,-0.00000391,0.00000264,-1.482214415,0.139299058,loss,ns,-0.00000456,0.00000448,-1.016478587,0.310194197,neg,ns,-0.002441475,0.001312907,-1.859594946,0.063890026,neg,ns,1.194566938,0.0000235,0.0000452,0.520305432,0.603222091,pos,ns,0.898648777,Ptprd,Ptprd_Exon,4,76041394,76041443,76041394,76041395,50,-,CGTGGGAGAGAGTTATTATCATATATGGACTGAGTGGTGGTTTGGCTAGA,"Exon (Ptprd-222/Ptprd, exon 7 of 8)",4,75941238,76449980,508743,2,Ptprd-206,408537,Ptprd-206;Ptprd-204;Ptprd-213;Ptprd-220;Ptprd-203;Ptprd-217;Ptprd-218;Ptprd-219;Ptprd-201;Ptprd-222,Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,13,32,19266,ENSMUSG00000028399,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4377,cg18288225,0.00000164,0.00000213,0.769670978,0.442081162,gain,ns,0.00000368,0.00000362,1.016435143,0.310214842,pos,ns,0.004231686,0.001059851,3.992716143,0.0000816,pos,ns,4.088219566,-0.000130184,0.0000364,-3.571749657,0.000410936,neg,ns,0.948582726,Opcml,Opcml_Intron,9,28631232,28631281,28631232,28631233,50,+,CGTTTAGACAAATGAGGATAATTATGTGTTCTCCAGCTCTTTGAGAGGTT,"Intron (Opcml-202/Opcml, intron 2 of 7)",9,27790947,28925410,1134464,1,Opcml-202,840285,Opcml-202;Opcml-201;Opcml-204;Opcml-208,Opcml;Opcml;Opcml;Opcml,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,12,330908,ENSMUSG00000062257,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19884,cg05270634,-0.00000813,0.00000366,-2.22165306,0.027028646,loss,ns,0.00000631,0.00000621,1.015989924,0.310426468,pos,ns,-0.0000399,0.001820699,-0.021917369,0.98252797,neg,ns,0.007655077,-0.0000153,0.0000626,-0.243687324,0.807634177,neg,ns,0.040945027,Rnd2,Rnd2_Exon,11,101468370,101468419,101468418,101468419,50,-,GGTGGTGGGAGACGCAGAGTGCGGCAAGACGGCGCTGCTGCAGGTGTTCG,"Exon (Rnd2-201/Rnd2, exon 1 of 5)",11,101464999,101471853,6855,1,Rnd2-203,3371,Rnd2-203;Rnd2-202;Rnd2-201;Vat1-201,Rnd2;Rnd2;Rnd2;Vat1,0;0;0;-2140,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,11858,ENSMUSG00000001313,conserved gene and region,11,101467816,101468520,705,*,705,74,0.726241135,0.807135343,0.104964539,5.91E-58,CpGisland,TRUE,U3,Pr-B
22246,cg13775901,-0.00000248,0.0000022,-1.129070069,0.259741228,loss,ns,0.00000379,0.00000373,1.015875734,0.310480762,pos,ns,0.001476309,0.001092917,1.350796557,0.177745754,pos,ns,0.750200765,-0.0000868,0.0000376,-2.310167033,0.021535384,neg,ns,0.946844782,Gm21985,Gm21985_Exon,2,112356481,112356530,112356481,112356482,50,-,CGGATCTTCACAGTAGCCCAATTAGAAGACAACAGTATCCAAATGAAGAA,"Exon (Slc12a6-204/Slc12a6, exon 21 of 25)",2,112266314,112406319,140006,1,Gm21985-201,90167,Gm21985-201;Slc12a6-204;Slc12a6-203;Slc12a6-201;Slc12a6-202;Slc12a6-206;Slc12a6-205;Slc12a6-208;Slc12a6-207,Gm21985;Slc12a6;Slc12a6;Slc12a6;Slc12a6;Slc12a6;Slc12a6;Slc12a6;Slc12a6,0;0;89739;0;0;9486;3955;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,108168782,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24694,cg02783173,0.0000669,0.00000431,15.5011312,1.60E-40,gain,yes,-0.00000745,0.00000733,-1.015862006,0.310487289,neg,ns,0.012118801,0.002147185,5.644041348,3.75E-08,pos,ns,7.425867033,-0.0000877,0.0000738,-1.187556556,0.235917289,neg,ns,0.069232878,Neurog2,Neurog2_Promoter,3,127627529,127627578,127627577,127627578,50,-,TCTGACTCAAGGCTCGGAGCTGGTAATCGTGTTTGTCTCCTGGTTCAGCG,Promoter (5-6kb),3,127633135,127635631,2497,1,Neurog2-201,-5606,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,13,14,11924,ENSMUSG00000027967,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
10926,cg12756474,-0.00000609,0.00000147,-4.15176319,0.0000427,loss,ns,0.00000253,0.00000249,1.015842619,0.310496508,pos,ns,-0.0000926,0.000729579,-0.126876304,0.899120556,neg,ns,0.046182073,0.00000994,0.0000251,0.396352134,0.692117954,pos,ns,0.966835214,Tcf7l2,Tcf7l2_Intron,19,55888902,55888951,55888902,55888903,50,-,CGCCATTTGAAATGCTAACACAATGAATATTTTCTCATTGGTCTGTGTCC,"Intron (Tcf7l2-213/Tcf7l2, intron 4 of 13)",19,55741820,55933229,191410,1,Tcf7l2-213,147082,Tcf7l2-213;Tcf7l2-201;Tcf7l2-208;Tcf7l2-211;Tcf7l2-212;Tcf7l2-206;Tcf7l2-204;Tcf7l2-205;Tcf7l2-222;Tcf7l2-215;Tcf7l2-214;Tcf7l2-207;Tcf7l2-202;Tcf7l2-209;Tcf7l2-210;Tcf7l2-217;Tcf7l2-220,Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,55,88,21416,ENSMUSG00000024985,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22627,cg24440735,0.00000134,0.00000364,0.369355243,0.712115117,gain,ns,0.00000628,0.00000618,1.015818985,0.310507746,pos,ns,-0.000907727,0.001811133,-0.501192755,0.616591173,neg,ns,0.210002697,-0.00000392,0.0000623,-0.062921003,0.94986996,neg,ns,0.925779084,Maf,Maf_Intergenic_downstream,8,115473803,115473852,115473803,115473804,50,+,CGGAAATAAACCCTGTCAGAAAATGAGAAGTGACTCCCCCTTTGGATGGC,Distal Intergenic,8,115682942,115707096,24155,2,Maf-201,233244,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,23,17132,ENSMUSG00000055435,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
19798,cg17469019,-0.0000115,0.00000494,-2.330296283,0.020431971,loss,ns,0.00000852,0.00000839,1.015708115,0.31056047,pos,ns,-0.003688939,0.002458674,-1.500377367,0.134534443,neg,ns,0.871166516,0.0000726,0.0000846,0.859206985,0.390890236,pos,ns,0.10562257,Ptgfrn,Ptgfrn_Promoter,3,101110453,101110502,101110453,101110454,50,+,CGCGCCTCCCATCCGGCGCTTTGCCAGCAACAAACACAAACTTTCCCAAG,Promoter (<=1kb),3,101040232,101110278,70047,2,Ptgfrn-201,-175,Ptgfrn-201,Ptgfrn,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,2,19221,ENSMUSG00000027864,conserved gene and region,3,101109653,101110470,818,*,818,113,0.777506113,0.938197172,0.138141809,1.44E-103,CpGisland,TRUE,U3,Pr-B
19747,cg07619865,-0.000021,0.0000181,-1.158020727,0.247746963,loss,ns,0.0000313,0.0000308,1.015614,0.31060523,pos,ns,-0.000613837,0.009024376,-0.068019841,0.945813691,neg,ns,0.024194404,0.00000136,0.000310348,0.004368119,0.996517566,pos,ns,0.656612134,Gm43941,Gm43941_Intergenic_downstream,6,101021828,101021877,101021876,101021877,50,+,TAATAATGCAAAATGTGCCATGAAATACCCAATTAAATTATTTTAACACG,Distal Intergenic,6,100960989,100962660,1672,1,Gm43941-201,60839,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7496,cg17773363,-0.000000842,0.000000653,-1.28940909,0.19821711,loss,ns,0.00000113,0.00000111,1.015494218,0.310662204,pos,ns,-0.0000661,0.000325123,-0.203173855,0.839132441,neg,ns,0.076169489,-0.00000213,0.0000112,-0.19017187,0.849298922,neg,ns,0.985240573,Mrps9,Mrps9_Intron,1,42888845,42888894,42888893,42888894,50,-,CTGACGCGCTAGGCCTGTCAACTTGTTACACGGATGGGTTGCACGCAGCG,"Intron (Mrps9-201/Mrps9, intron 5 of 10)",1,42851233,42905682,54450,1,Mrps9-201,37612,Mrps9-201;Mrps9-202;Mrps9-203;Mrps9-204;Mrps9-206,Mrps9;Mrps9;Mrps9;Mrps9;Mrps9,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,12,69527,ENSMUSG00000060679,conserved gene and region,1,42888767,42888894,128,*,128,10,0.5703125,0.992248062,0.078125,0.000000662,CpGisland,TRUE,U10,Tr-S
21349,cg10492508,0.0000768,0.0000108,7.099318572,8.60E-12,gain,yes,-0.0000187,0.0000184,-1.015466472,0.310675403,neg,ns,0.015487948,0.005381386,2.87805938,0.004279253,pos,ns,2.368632068,-0.00032788,0.000185065,-1.771697201,0.077427163,neg,ns,0.195468273,Cacna2d2,Cacna2d2_Intron,9,107449234,107449283,107449282,107449283,50,+,GATTCGAGATTCATTTCCTTAAACACACATTGTCTCACTCCAATTTCACG,"Intron (Cacna2d2-201/Cacna2d2, intron 2 of 37)",9,107399612,107529343,129732,1,Cacna2d2-201,49622,Cacna2d2-201;Cacna2d2-205;Cacna2d2-202;Cacna2d2-203;Cacna2d2-204;Cacna2d2-208,Cacna2d2;Cacna2d2;Cacna2d2;Cacna2d2;Cacna2d2;Cacna2d2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,18,56808,ENSMUSG00000010066,conserved gene and region,9,107449282,107449369,88,*,88,9,0.681818182,1.016688062,0.102272727,0.000000303,CpGisland,TRUE,U11,Tr-P
673,cg11396695,0.000026,0.00000658,3.95855894,0.0000936,gain,ns,0.0000113,0.0000112,1.015452662,0.310681972,pos,ns,0.0110799,0.003273889,3.384323385,0.000805266,pos,ns,3.09406043,-0.0000165,0.000112589,-0.146344708,0.883744394,neg,ns,0.103307626,Gdnf,Gdnf_Exon,15,7815616,7815665,7815664,7815665,50,+,TGAAGTTATGGGATGTCGTGGCTGTCTGCCTGGTGCTGCTCCACACCGCG,"Exon (Gdnf-201/Gdnf, exon 2 of 3)",15,7810846,7837575,26730,1,Gdnf-201,4770,Gdnf-201,Gdnf,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,3,14573,ENSMUSG00000022144,mapped to different genes,15,7815534,7815869,336,*,336,35,0.678571429,0.916816091,0.104166667,1.42E-27,CpGisland,TRUE,U13,Hc-P
12907,cg03780403,-0.00000186,0.00000612,-0.304328314,0.761081963,loss,ns,0.0000106,0.0000104,1.015395973,0.31070894,pos,ns,0.000363909,0.00304457,0.119527282,0.90493505,pos,ns,0.04338259,-0.000252584,0.000104703,-2.412392227,0.016428636,neg,ns,0.699582834,Gm19987,Gm19987_Intergenic_downstream,9,68250206,68250255,68250206,68250207,50,+,CGGCGATTCACTCTGGCTGCCAGGGGGTTCCAAAATAGCAAACTATTTTT,Distal Intergenic,9,68421406,68421904,499,2,Gm19987-201,171649,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,100503958,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5692,cg20406361,0.0000941,0.0000148,6.3772535,6.54E-10,gain,yes,-0.0000254,0.0000251,-1.015389036,0.31071224,neg,ns,0.016187114,0.007341695,2.204819588,0.028200889,pos,ns,1.549737199,-0.000228266,0.00025248,-0.90409585,0.366646618,neg,ns,0.254004567,Ldb3,Ldb3_Exon,14,34561818,34561867,34561866,34561867,50,-,GCCATGGTGCCAGTTGCGCAATTTGGCAAAACGTGGGCTGTTACGTTCCG,"Exon (Ldb3-207/Ldb3, exon 10 of 10)",14,34526603,34588664,62062,2,Ldb3-201,26797,Ldb3-201;Ldb3-205;Ldb3-202;Ldb3-204;Ldb3-208;Ldb3-207;Ldb3-203,Ldb3;Ldb3;Ldb3;Ldb3;Ldb3;Ldb3;Ldb3,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,24131,ENSMUSG00000021798,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8916,cg04388597,-0.000000881,0.00000137,-0.641150455,0.521898648,loss,ns,-0.00000237,0.00000233,-1.015358381,0.310726823,neg,ns,-0.001832012,0.000683575,-2.680046009,0.007754648,neg,ns,2.110437905,0.0000585,0.0000235,2.486663839,0.013420759,pos,ns,0.039818484,Helt,Helt_Promoter,8,46295494,46295543,46295542,46295543,50,+,CCATCGCCCAAGTTTTGACACAAAAAGGCATTATTTCATACTTGAATACG,Promoter (<=1kb),8,46292039,46294671,2633,2,Helt-201,-823,Helt-201;Helt-202;Helt-203,Helt;Helt;Helt,0;-1505;-2159,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,15,22,234219,ENSMUSG00000047171,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
27870,cg02186944,-0.0000226,0.00000943,-2.401022953,0.016938143,loss,ns,-0.0000163,0.000016,-1.015335306,0.310737801,neg,ns,-0.016626998,0.004694369,-3.541903043,0.000458297,neg,ns,3.338853403,0.000328929,0.000161439,2.037482936,0.042450592,pos,ns,0.649032969,Ush2a,Ush2a_Intron,1,188884728,188884777,188884776,188884777,50,+,ATCAAGACCCCTGACAGTTATTTGTAGAGATACCATCTGGCTGCTGTTCG,"Intron (Ush2a-201/Ush2a, intron 60 of 70)",1,188263034,188965041,702008,1,Ush2a-201,621694,Ush2a-201,Ush2a,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,33,36,22283,ENSMUSG00000026609,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16183,cg21113620,-0.0000345,0.0000064,-5.388823362,0.000000141,loss,yes,-0.000011,0.0000109,-1.015139318,0.310831053,neg,ns,-0.006244279,0.003187164,-1.959196124,0.050985851,neg,ns,1.292550329,-0.000240108,0.000109606,-2.190644295,0.029221919,neg,ns,0.793346381,Gm26913,Gm26913_Intergenic_downstream,13,84566558,84566607,84566558,84566559,50,-,CGTAATAGGGGGCCAGTAAGGTACAATTTAGTGAAATTACTGCTCCAGTG,Distal Intergenic,13,84690210,84690941,732,2,Gm26913-201,124383,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,9,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17320,cg26672432,-0.00000449,0.0000118,-0.379982023,0.704218958,loss,ns,-0.0000204,0.0000201,-1.01509977,0.310849872,neg,ns,-0.009475561,0.005880689,-1.611301064,0.108131767,neg,ns,0.966046699,0.000128872,0.000202236,0.63723384,0.524442863,pos,ns,0.805923523,Adamts3,Adamts3_Exon,5,89694771,89694820,89694771,89694772,50,+,CGTCTTCTTGGATTAACACATGTCTAGCCCCAGGGGGTATATCAAACATC,"Exon (Adamts3-201/Adamts3, exon 16 of 22)",5,89677087,89882935,205849,2,Adamts3-201,188115,Adamts3-201;Adamts3-202,Adamts3;Adamts3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,330119,ENSMUSG00000043635,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21413,cg03365548,0.0000147,0.00000955,1.536386936,0.125463503,gain,ns,0.0000165,0.0000162,1.014917438,0.310936646,pos,ns,0.014143271,0.004753855,2.975116102,0.003159012,pos,ns,2.500448676,-0.000523329,0.000163485,-3.20108822,0.001511085,neg,ns,0.297968352,Sema3f,Sema3f_Intergenic_upstream,9,107723973,107724022,107724021,107724022,50,-,AATTGCATTCTGCCAAGATTAAATGGGCTTGAACGCCCTGCCTCTGCCCG,Distal Intergenic,9,107681500,107710475,28976,2,Sema3f-201,-13547,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,6,20350,ENSMUSG00000034684,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U5,En-Sd
27637,cg23808754,-0.00000056,0.000000478,-1.171755123,0.242195158,loss,ns,0.000000824,0.000000812,1.014841488,0.310972796,pos,ns,0.000557404,0.00023794,2.342624653,0.019780918,pos,ns,1.703753559,-0.0000121,0.00000818,-1.47774481,0.140491334,neg,ns,0.01198973,Stx16,Stx16_fiveUTR,2,174077078,174077127,174077078,174077079,50,+,CGACGCTTTCTTGTTGTTGCGGAATAATTCCATCCAAAACCGGCAGCTGT,Promoter (<=1kb),2,174076308,174092433,16126,1,Stx16-205,770,Stx16-205;Stx16-203;Stx16-204;Stx16-202;Stx16-201;Stx16-206,Stx16;Stx16;Stx16;Stx16;Stx16;Stx16,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,6,6,228960,ENSMUSG00000027522,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
27451,cg00474060,-0.0000445,0.00000871,-5.110045272,0.000000564,loss,yes,-0.000015,0.0000148,-1.014652577,0.311062725,neg,ns,0.000981228,0.004335651,0.226316243,0.821104616,pos,ns,0.085601506,-0.0000361,0.000149103,-0.242316884,0.808694863,neg,ns,0.720405965,Pbx1,Pbx1_Intron,1,168247074,168247123,168247122,168247123,50,-,TCTGGCAGATACTTGGCTCCTACTGCGGCTCTTTCTCATGTTCTAAAACG,"Intron (Pbx1-208/Pbx1, intron 2 of 7)",1,168119364,168432270,312907,2,Pbx1-208,185147,Pbx1-208;Pbx1-205;Pbx1-206;Pbx1-201;Pbx1-202;Pbx1-204,Pbx1;Pbx1;Pbx1;Pbx1;Pbx1;Pbx1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,84,18514,ENSMUSG00000052534,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3151,cg10219385,-0.0000429,0.0000114,-3.75819438,0.000204471,loss,ns,0.0000197,0.0000194,1.014642784,0.311067387,pos,ns,0.005696564,0.005680616,1.002807494,0.316735859,pos,ns,0.499302766,-0.000516948,0.000195356,-2.646187209,0.00855591,neg,ns,0.733891291,Ptprz1,Ptprz1_Exon,6,23007252,23007301,23007300,23007301,50,+,TCTCAATTTTCTCTGACTACAGAGGCCAGTAATAGTAGCCATGAGTCTCG,"Exon (Ptprz1-201/Ptprz1, exon 13 of 30)",6,22875502,23052916,177415,1,Ptprz1-201,131750,Ptprz1-201;Ptprz1-206;Ptprz1-204,Ptprz1;Ptprz1;Ptprz1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,4,19283,ENSMUSG00000068748,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24832,cg00658982,-0.00000906,0.00000759,-1.194868006,0.233051949,loss,ns,0.0000131,0.0000129,1.01460708,0.311084386,pos,ns,-0.002361942,0.003775802,-0.625547159,0.532072247,neg,ns,0.274029393,-0.000273849,0.00012985,-2.108970362,0.035748912,neg,ns,0.697117444,Rimbp2,Rimbp2_threeUTR,5,128759098,128759147,128759146,128759147,50,+,CGAGGACATTTCCCTGCCTCTCCCAGGACTACCAGAACCCATAGATGACG,3' UTR,5,128757791,128820069,62279,2,Rimbp2-205,60922,Piwil1-201;Piwil1-202;Rimbp2-205;Rimbp2-204;Rimbp2-209;Rimbp2-202;Rimbp2-201;Rimbp2-207;Rimbp2-208,Piwil1;Piwil1;Rimbp2;Rimbp2;Rimbp2;Rimbp2;Rimbp2;Rimbp2;Rimbp2,22924;21608;0;0;0;193908;194215;194339;86524,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,2,231760,ENSMUSG00000029420,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
462,cg15176693,0.000076,0.0000169,4.50445591,0.00000944,gain,ns,-0.0000291,0.0000287,-1.014570291,0.311101901,neg,ns,0.018984875,0.008402963,2.259307158,0.024558509,pos,ns,1.609798003,-0.000653275,0.000288977,-2.260646317,0.024474402,neg,ns,0.43260202,Upf2,Upf2_threeUTR,2,6056621,6056670,6056669,6056670,50,+,ATGGAAATGCTGCCCAATCTTCACCAGCTTCAGAAATCTGACCTTTGCCG,3' UTR,2,5951469,6056703,105235,1,Upf2-201,105152,Upf2-201;Upf2-202;Upf2-203,Upf2;Upf2;Upf2,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,5,326622,ENSMUSG00000043241,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18692,cg17081589,0.0000567,0.00000953,5.946488037,7.38E-09,gain,yes,0.0000164,0.0000162,1.014561512,0.311106081,pos,ns,0.013422315,0.004742554,2.830187237,0.004955772,pos,ns,2.304888643,-0.000525067,0.000163096,-3.219374953,0.001420878,neg,ns,0.173347309,Skap1,Skap1_Intron,11,96742141,96742190,96742141,96742142,50,+,CGACCTTACCATGACCCCACCGAGGGTAGGGTGAAAAGCAGGTGGATCTG,"Intron (Skap1-204/Skap1, intron 11 of 12)",11,96464593,96758941,294349,1,Skap1-204,277548,Skap1-204;Skap1-203;Skap1-201,Skap1;Skap1;Skap1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,40,46,78473,ENSMUSG00000057058,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
14584,cg08703210,0.0000834,0.00000854,9.762642472,8.32E-20,gain,yes,-0.0000147,0.0000145,-1.014513866,0.311128767,neg,ns,-0.001884772,0.004252828,-0.443180819,0.657944068,neg,ns,0.181811024,-0.0000546,0.000146254,-0.37343551,0.709079577,neg,ns,0.674444998,Foxh1,Foxh1_Exon,15,76669093,76669142,76669093,76669094,50,-,CGCCCAGAAGTTGCCCTTGGCCTGGGGCTTTGCAGGGTCCTTGGGCACCT,Promoter (<=1kb),15,76668225,76669948,1724,2,Foxh1-201,806,Foxh1-201;Foxh1-202;Kifc2-205;Kifc2-201;Kifc2-206;Kifc2-204;Kifc2-203;Ppp1r16a-201;Ppp1r16a-205,Foxh1;Foxh1;Kifc2;Kifc2;Kifc2;Kifc2;Kifc2;Ppp1r16a;Ppp1r16a,0;0;9235;8527;8457;8394;5025;-2473;-2505,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,14106,ENSMUSG00000033837,conserved gene and region,15,76668969,76669094,126,*,126,9,0.642857143,0.694002448,0.071428571,0.00000623,CpGisland,TRUE,U11,Tr-P
10217,cg18026558,0.00010184,0.00000849,12.0005515,1.65E-27,gain,yes,-0.0000146,0.0000144,-1.014403692,0.311181229,neg,ns,0.010511889,0.00422369,2.488792636,0.013342273,pos,ns,1.874770172,-0.000216601,0.000145252,-1.491203559,0.136924904,neg,ns,0.173133106,Hoxa11,Hoxa11_Exon,6,52245496,52245545,52245544,52245545,50,-,TGCCATTTAGTGGCGGGCTCAATGGCGTACTCTCTGAAGGTCACTTCGCG,Promoter (<=1kb),6,52242106,52245810,3705,2,Hoxa11-201,265,Hoxa10-201;Hoxa10-204;Hoxa11-201;Hoxa11-202,Hoxa10;Hoxa10;Hoxa11;Hoxa11,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,15,18,15396,ENSMUSG00000038210,mapped to different genes,6,52244948,52245549,602,*,602,70,0.674418605,1.022616968,0.11627907,2.62E-58,CpGisland,TRUE,NA,NRS
16322,cg25555088,-0.00000921,0.00000456,-2.018705101,0.044378577,loss,ns,0.00000786,0.00000775,1.01430334,0.31122902,pos,ns,-0.000202278,0.002270019,-0.08910831,0.929053374,neg,ns,0.031959335,0.0000573,0.0000781,0.734143061,0.463416455,pos,ns,0.915056594,Mrm1,Mrm1_Intergenic_downstream,11,84744911,84744960,84744911,84744912,50,-,CGATAAAACCAACACAGTTTTCCTGATGGCGGCTGCAAAAGGATCTATTG,Distal Intergenic,11,84814743,84815390,648,2,Mrm1-203,70479,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,37,42,217038,ENSMUSG00000018405,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14029,cg24472499,0.000024,0.0000106,2.258082717,0.024635631,gain,ns,-0.0000183,0.0000181,-1.014271276,0.311244291,neg,ns,-0.006012224,0.00529648,-1.135135767,0.257195334,neg,ns,0.589736915,-0.000183618,0.000182146,-1.008083018,0.314200805,neg,ns,0.529882716,Robo2,Robo2_Intron,16,74295737,74295786,74295737,74295738,50,-,CGAGGAGAAAAGGGTGACAGCCTTGACATCCCACCAATCATCCCTCTAGA,"Intron (Robo2-203/Robo2, intron 2 of 27)",16,73891839,74410989,519151,2,Robo2-203,115203,Robo2-203;Robo2-210;Robo2-202;Robo2-211;Robo2-206,Robo2;Robo2;Robo2;Robo2;Robo2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,11,268902,ENSMUSG00000052516,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17500,cg26224968,-0.0000106,0.00000835,-1.264374132,0.207045559,loss,ns,0.0000144,0.0000142,1.013860128,0.311440148,pos,ns,0.001799419,0.004155584,0.433012413,0.665306866,pos,ns,0.176977994,-0.000156324,0.00014291,-1.093862409,0.274864559,neg,ns,0.619576581,Tox3,Tox3_Intergenic_upstream,8,90513339,90513388,90513387,90513388,50,+,TCTAATAAAATCAAACACATCACAACTCAAAGCACTTTAGCACAGTGTCG,Distal Intergenic,8,90247040,90348343,101304,2,Tox3-201,-164996,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,19,244579,ENSMUSG00000043668,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9644,cg08515893,0.0000281,0.00000951,2.958346104,0.003330997,gain,ns,0.0000164,0.0000162,1.013788502,0.311474276,pos,ns,-0.001180703,0.004731985,-0.249515324,0.803127439,neg,ns,0.095215536,0.000175138,0.000162733,1.076233425,0.282659728,pos,ns,0.082408387,Dbx1,Dbx1_Intergenic_upstream,7,49678272,49678321,49678272,49678273,50,+,CGAATTTGTAACAGTGACCAGAACAGACCGCATTACACTCTCCAAATGGT,Distal Intergenic,7,49631499,49636849,5351,2,Dbx1-201,-41423,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,18,13172,ENSMUSG00000030507,conserved gene and region,7,49678151,49678426,276,*,276,14,0.452898551,1.007824726,0.050724638,0.000000385,CpGisland,TRUE,U13,Hc-P
2954,cg21470537,-0.00000331,0.00000315,-1.049852936,0.294603482,loss,ns,0.00000543,0.00000535,1.013765276,0.311485344,pos,ns,-0.0000478,0.001568368,-0.030475602,0.975707362,neg,ns,0.010680418,0.0000458,0.0000539,0.849860681,0.396058418,pos,ns,0.936779831,Lrmda,Lrmda_Intron,14,22154046,22154095,22154046,22154047,50,+,CGCTACAGAGTTTGTCTTGTAAAAGTGCAGCTGTCCAAAACATGACAGCT,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,134334,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206,Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25990,cg09580507,0.000000532,0.00000349,0.152324469,0.879030118,gain,ns,0.00000602,0.00000593,1.013687921,0.311522206,pos,ns,-0.0000369,0.001738459,-0.021208618,0.983092884,neg,ns,0.007405447,-0.0000663,0.0000598,-1.109472352,0.268086383,neg,ns,0.882986418,Tmem164,Tmem164_Exon,X,142834190,142834239,142834190,142834191,50,-,CGAAGTGAATTTGAACAACATGCTGTGTCCGGCCATCTCAGACCCATTCT,"Exon (Tmem164-204/Tmem164, exon 6 of 7)",20,142681406,142843494,162089,1,Tmem164-204,152784,Tmem164-204;Tmem164-202;Tmem164-205;Tmem164-201;Tmem164-206;Tmem164-208;Tmem164-209;Tmem164-203,Tmem164;Tmem164;Tmem164;Tmem164;Tmem164;Tmem164;Tmem164;Tmem164,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,15,209497,ENSMUSG00000047045,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16801,cg02644056,0.0000578,0.0000109,5.306739208,0.000000213,gain,yes,0.0000187,0.0000185,1.013669476,0.311530996,pos,ns,0.006217611,0.005418639,1.147448743,0.252080976,pos,ns,0.598459928,0.0000383,0.000186347,0.205310297,0.837464449,pos,ns,0.03647872,Lrba,Lrba_Exon,3,86547421,86547470,86547421,86547422,50,-,CGTCCACGAAGTTGAAGACGCCCATCTGGTTTAGGTAGAGCACCACCTCA,"Exon (Lrba-205/Lrba, exon 1 of 5)",3,86224680,86746712,522033,1,Lrba-202,322741,Lrba-202;Lrba-204;Lrba-201;Lrba-208;Lrba-203;Lrba-205;Lrba-206;Mab21l2-201;Mab21l2-202,Lrba;Lrba;Lrba;Lrba;Lrba;Lrba;Lrba;Mab21l2;Mab21l2,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,17,45,80877,ENSMUSG00000028080,mapped to different genes,3,86546680,86547428,749,*,749,59,0.619492657,0.821027794,0.078771696,1.32E-38,CpGisland,TRUE,U3,Pr-B
22890,cg04811814,0.00000459,0.00000404,1.135812045,0.256912568,gain,ns,0.00000695,0.00000686,1.013615111,0.311556905,pos,ns,0.001887399,0.002010186,0.938917949,0.348503845,pos,ns,0.457792426,-0.0000742,0.0000691,-1.073051167,0.284082744,neg,ns,0.046466148,Meis2,Meis2_fiveUTR,2,116065684,116065733,116065732,116065733,50,-,AAGAGCCTCAGTTTGGCGGCGCGGGTCGGCGGCGGGAGAACGAAATGACG,Promoter (<=1kb),2,115863064,116065839,202776,2,Meis2-205,106,Meis2-201;Meis2-203;Meis2-205;Meis2-206;Meis2-204;Meis2-202;Meis2-213;Meis2-210;Meis2-209,Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2,0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,11,97,17536,ENSMUSG00000027210,conserved gene and region,2,116065673,116065952,280,*,280,30,0.692857143,0.987190034,0.107142857,4.28E-24,CpGisland,TRUE,U1,Pr-A
15233,cg16831375,-0.00000203,0.00000155,-1.30877655,0.191579445,loss,ns,0.00000267,0.00000263,1.013605669,0.311561405,pos,ns,0.001378086,0.000771919,1.785271544,0.075194858,pos,ns,1.123811855,-0.0000556,0.0000265,-2.095384338,0.036947829,neg,ns,0.955934495,Atl2,Atl2_threeUTR,17,79852739,79852788,79852739,79852740,50,-,CGAGCAGCATAGAAGATATTTTTGCCATCATTGTGCTTTATAAAATTTGC,Promoter (<=1kb),17,79850127,79852755,2629,2,Atl2-207,0,Atl2-201;Atl2-208;Atl2-202;Atl2-203;Atl2-205;Atl2-207;Atl2-204,Atl2;Atl2;Atl2;Atl2;Atl2;Atl2;Atl2,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,7,56298,ENSMUSG00000059811,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2906,cg02736176,-0.000000278,0.000000672,-0.413397204,0.679601442,loss,ns,0.00000116,0.00000114,1.013384897,0.311666634,pos,ns,0.001060569,0.000334359,3.171950877,0.001665832,pos,ns,2.778368785,-0.0000295,0.0000115,-2.564320777,0.0108087,neg,ns,0.977335844,Ehbp1,Ehbp1_Intron,11,22045527,22045576,22045575,22045576,50,+,TCAGTACACACTTGACAATTCTTGTTCAATTATCTCTATTATTTAATGCG,"Intron (Ehbp1-201/Ehbp1, intron 20 of 23)",11,22005828,22285838,280011,2,Ehbp1-201,240262,Ehbp1-201;Ehbp1-202;Ehbp1-207,Ehbp1;Ehbp1;Ehbp1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,34,45,216565,ENSMUSG00000042302,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6567,cg01312261,-0.0000513,0.000011,-4.660486822,0.00000469,loss,ns,0.000019,0.0000187,1.013199515,0.311755013,pos,ns,-0.009395408,0.005481777,-1.713934777,0.087540297,neg,ns,1.057791986,-0.0000799,0.000188518,-0.423868514,0.671955669,neg,ns,0.570262978,Zfp536,Zfp536_Intron,7,37744331,37744380,37744379,37744380,50,+,AAAGGGCATTTCTGCGAATTGCTTTTAACATAAATAGCAAACCGGGCTCG,"Intron (Zfp536-202/Zfp536, intron 1 of 6)",7,37479104,37769624,290521,2,Zfp536-202,25244,Zfp536-202;Zfp536-201;Zfp536-203;Zfp536-206;Zfp536-209;Zfp536-208;Zfp536-205;Zfp536-207,Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,73,112,243937,ENSMUSG00000043456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27814,cg20841796,-0.0000564,0.0000143,-3.956340132,0.0000944,loss,ns,0.0000245,0.0000242,1.013191931,0.311758629,pos,ns,-0.023511364,0.007097838,-3.312468266,0.001034153,neg,ns,2.985415104,0.000558526,0.000244094,2.288158754,0.022801125,pos,ns,0.698034883,Esrrg,Esrrg_Intron,1,188036135,188036184,188036183,188036184,50,+,ATAATGACACCCTGTCTCTGTAAAGTAGTCATGTTTTCTCAAATCACACG,"Intron (Esrrg-204/Esrrg, intron 3 of 3)",1,187608791,188043502,434712,1,Esrrg-204,427344,Esrrg-204;Esrrg-203;Esrrg-201;Esrrg-202,Esrrg;Esrrg;Esrrg;Esrrg,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,60,26381,ENSMUSG00000026610,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22839,cg14885282,0.0000234,0.0000133,1.756610166,0.079971585,gain,ns,-0.0000229,0.0000226,-1.013174111,0.311767125,neg,ns,0.0027439,0.006631531,0.413765735,0.679331786,pos,ns,0.167918064,-0.000230739,0.000228058,-1.011758447,0.312442594,neg,ns,0.648286474,Gm47893,Gm47893_Intergenic_upstream,13,116010578,116010627,116010578,116010579,50,+,CGTCTCACAGACCTGGTGACACCTAAATGACACACACTTTGGATTGTCTT,Distal Intergenic,13,116096035,116096300,266,1,Gm47893-201,-85408,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21217,cg15345285,-0.0000781,0.0000144,-5.414127468,0.000000124,loss,yes,0.0000248,0.0000245,1.013148605,0.311779287,pos,ns,-0.023218949,0.007184131,-3.231977419,0.001361643,neg,ns,2.865936733,0.000502515,0.000247062,2.033964706,0.042806303,pos,ns,0.770689814,Mpped2,Mpped2_Intron,2,106808720,106808769,106808720,106808721,50,-,CGGTTCCTTCCTGTGCACCAGACATTCAAAATAGCATGAGTAAGGATCAA,"Intron (Mpped2-202/Mpped2, intron 4 of 6)",2,106693269,106868356,175088,1,Mpped2-202,115451,Mpped2-202;Mpped2-201;Mpped2-204,Mpped2;Mpped2;Mpped2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,33,77015,ENSMUSG00000016386,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2592,cg25656168,-0.00000288,0.00000164,-1.752319964,0.080707467,loss,ns,0.00000283,0.00000279,1.013047353,0.311827567,pos,ns,0.001730096,0.000818384,2.114037897,0.035310337,pos,ns,1.452098133,-0.0000403,0.0000281,-1.431832537,0.153199207,neg,ns,0.05861724,Eif4g1,Eif4g1_fiveUTR,16,20673512,20673561,20673560,20673561,50,-,CTGGTGCCAGCGAGACCTGGAATTTCCGGTCTGGTTGGTCTGGGGCCCCG,Promoter (<=1kb),16,20673517,20692881,19365,1,Eif4g1-204,0,Eif4g1-220;Eif4g1-208;Eif4g1-201;Eif4g1-206;Eif4g1-216;Eif4g1-202;Eif4g1-217;Eif4g1-207;Eif4g1-218;Eif4g1-225;Eif4g1-214;Eif4g1-203;Eif4g1-222;Eif4g1-221;Eif4g1-205;Eif4g1-212;Eif4g1-204;Eif4g1-215;Eif4g1-219;Eif4g1-210;Eif4g1-211,Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;-4845,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,7,10,208643,ENSMUSG00000045983,conserved gene and region,16,20672514,20673561,1048,*,1048,121,0.738549618,0.847148736,0.115458015,6.53E-100,CpGisland,TRUE,U1,Pr-A
13288,cg05484346,0.0000122,0.00000702,1.742011136,0.082498307,gain,ns,0.0000121,0.0000119,1.012864273,0.311914878,pos,ns,-0.000452884,0.003492993,-0.129655125,0.896923373,neg,ns,0.047244659,0.000143197,0.000120124,1.192079383,0.234141864,pos,ns,0.45118999,Pebp4,Pebp4_Intron,14,70001851,70001900,70001899,70001900,50,-,CCTGTGATGAACGGAGCTAATTTCTGGTTTGCTGGTATGCCGCAGAGACG,"Intron (Pebp4-201/Pebp4, intron 4 of 6)",14,69840420,70059918,219499,1,Pebp4-201,161431,Pebp4-201,Pebp4,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,14,14,73523,ENSMUSG00000022085,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16161,cg09482204,-0.00000184,0.00000093,-1.978763384,0.048727417,loss,ns,0.0000016,0.00000158,1.01268106,0.312002269,pos,ns,0.000557589,0.000462702,1.205071562,0.22909479,pos,ns,0.639984788,-0.00000557,0.0000159,-0.349743869,0.72676841,neg,ns,0.972093961,Zfp407,Zfp407_Intron,18,84542604,84542653,84542652,84542653,50,+,TAACTTCTTCCCAAAGTGCAAGATTCTTAAATCTCCTTCAAAACATTTCG,"Intron (Zfp407-201/Zfp407, intron 2 of 2)",18,84128027,84558425,430399,2,Zfp407-201,15772,Zfp407-201;Zfp407-202;Zfp407-204,Zfp407;Zfp407;Zfp407,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,32,240476,ENSMUSG00000048410,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26800,cg19599929,0.0000241,0.00000322,7.470578162,8.19E-13,gain,yes,0.00000554,0.00000547,1.012675893,0.312004735,pos,ns,0.004633537,0.001602402,2.891619284,0.004103547,pos,ns,2.38684056,-0.0000379,0.0000551,-0.688258239,0.491804874,neg,ns,0.048330385,Sox12,Sox12_threeUTR,2,152396687,152396736,152396735,152396736,50,+,CCCCAATACCTGATTCCTGTATGTAAACAGCTGGTTTGGGGGCGTGCGCG,3' UTR,2,152393611,152398063,4453,2,Sox12-202,1327,Sox12-202;Sox12-201,Sox12;Sox12,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,7,7,20667,ENSMUSG00000051817,mapped to different genes,2,152396729,152396923,195,*,195,21,0.666666667,0.980603448,0.107692308,4.93E-17,CpGisland,TRUE,U1,Pr-A
7020,cg03962027,-0.000047,0.0000109,-4.297645213,0.0000231,loss,ns,0.0000188,0.0000186,1.012597294,0.312042231,pos,ns,0.005627114,0.005437865,1.034802157,0.301567871,pos,ns,0.52061493,-0.0000546,0.000187008,-0.291795461,0.770638183,neg,ns,0.715507299,Zfpm2,Zfpm2_Intron,15,40658235,40658284,40658283,40658284,50,-,TATTTTAATATTTTGCTTATTCTTTCCCCTTGGGTGCTCTCCGGGCAGCG,"Intron (Zfpm2-202/Zfpm2, intron 1 of 3)",15,40655035,40872723,217689,1,Zfpm2-202,3200,Zfpm2-202;Zfpm2-201;Zfpm2-204,Zfpm2;Zfpm2;Zfpm2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,41,22762,ENSMUSG00000022306,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2467,cg07184727,0.0000205,0.0000147,1.387236441,0.166366189,gain,ns,0.0000254,0.0000251,1.012541138,0.312069022,pos,ns,-0.008158735,0.007339496,-1.111620613,0.267162673,neg,ns,0.57322422,0.000178311,0.000252405,0.706448296,0.480440012,pos,ns,0.625985023,Gm4849,Gm4849_Intergenic_downstream,1,19699899,19699948,19699899,19699900,50,+,CGCCTTTCTTGCTGTACATGTTGTTAATCTGTGAAATGCAAATTCCCTTC,Distal Intergenic,1,19330939,19333184,2246,1,Gm4849-201,368960,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,10,226901,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26964,cg16602490,0.000124172,0.0000148,8.402610085,1.60E-15,gain,yes,0.0000254,0.0000251,1.012492924,0.312092026,pos,ns,0.023346799,0.007355078,3.174242214,0.001653152,pos,ns,2.781687342,-0.000414591,0.000252941,-1.639086831,0.102209596,neg,ns,0.281907805,Ptchd1,Ptchd1_Exon,X,155623140,155623189,155623140,155623141,50,+,CGCCAGCAGGTGCTCCACGCTCTCCTCGACCTGGTAGCGGCTGAAGCTGG,Promoter (<=1kb),20,155573455,155623325,49871,2,Ptchd1-201,136,Gm15155-202;Gm15155-201;Ptchd1-201;Ptchd1-203;Ptchd1-202,Gm15155;Gm15155;Ptchd1;Ptchd1;Ptchd1,-1552;-1586;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,11,211612,ENSMUSG00000041552,conserved gene and region,X,155623027,155623834,808,*,808,97,0.735148515,0.890798327,0.120049505,4.32E-82,CpGisland,TRUE,U3,Pr-B
9283,cg11043648,-0.000021,0.0000123,-1.705388471,0.089123722,loss,ns,0.0000212,0.0000209,1.012257028,0.312204591,pos,ns,0.006744085,0.006136669,1.098981283,0.272628995,pos,ns,0.564427958,-0.000051,0.00021104,-0.241746925,0.809136102,neg,ns,0.789250065,Zfp282,Zfp282_Exon,6,47880269,47880318,47880317,47880318,50,+,CCACATGGAGAGCAAGTGGGCCGTGCTGGGGACCCTGCTGCAGGAGTACG,"Exon (Zfp282-201/Zfp282, exon 2 of 8)",6,47877204,47908485,31282,1,Zfp282-201,3065,Zfp282-201;Zfp282-202,Zfp282;Zfp282,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,5,101095,ENSMUSG00000025821,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13482,cg12566943,-0.0000125,0.00000398,-3.132705886,0.001897461,loss,ns,0.00000685,0.00000677,1.012109329,0.312275084,pos,ns,-0.001885221,0.001982705,-0.950832415,0.342430169,neg,ns,0.46542798,-0.000046,0.0000682,-0.673976782,0.500828306,neg,ns,0.949301883,Vwc2l,Vwc2l_Exon,1,70750910,70750959,70750958,70750959,50,+,AGGGGCTAATTTTAGATTTGTTCCTAGCCCTCTCCATGTGAATGGTGTCG,"Exon (Vwc2l-201/Vwc2l, exon 3 of 4)",1,70725715,70885397,159683,1,Vwc2l-201,25195,Vwc2l-201;Vwc2l-203;Vwc2l-204,Vwc2l;Vwc2l;Vwc2l,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,6,320460,ENSMUSG00000045648,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19390,cg05213281,-0.000000738,0.00000543,-0.135901016,0.891987738,loss,ns,0.00000934,0.00000923,1.011878289,0.312385375,pos,ns,-0.002147327,0.002703234,-0.794354538,0.42759674,neg,ns,0.368965615,0.0000321,0.000093,0.345766105,0.729753027,pos,ns,0.911231346,Efnb1,Efnb1_Intergenic_downstream,X,99202586,99202635,99202586,99202587,50,+,CGTGCCCGCATGCCCAATTGATTCTCCCAGCACACACAGGTAATTCATCT,Distal Intergenic,20,99138131,99147230,9100,1,Efnb1-202,64455,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,14,13641,ENSMUSG00000031217,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19570,cg08372705,0.0000696,0.00000994,7.001786878,1.57E-11,gain,yes,-0.0000171,0.0000169,-1.011846988,0.31240032,neg,ns,0.006485056,0.004946583,1.311017293,0.190822224,pos,ns,0.719371048,-0.00033621,0.000170113,-1.976399662,0.048995674,neg,ns,0.081822026,Sox14,Sox14_Intergenic_downstream,9,99869375,99869424,99869423,99869424,50,+,ATGCAGTAATGCTGTTACACCTCGAGTGTGCAAATCCCATTGACTCGCCG,Distal Intergenic,9,99874220,99875655,1436,2,Sox14-202,6231,Sox14-201;Sox14-202,Sox14;Sox14,0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,12,18,20669,ENSMUSG00000053747,mapped to different genes,9,99869255,99869839,585,*,585,42,0.608547009,0.785385501,0.071794872,5.36E-26,CpGisland,TRUE,U13,Hc-P
6167,cg18069977,0.00000868,0.0000132,0.659445002,0.510099632,gain,ns,0.0000226,0.0000224,1.011798809,0.312423322,pos,ns,0.010440038,0.006549289,1.594072009,0.111938923,pos,ns,0.951018875,0.0001465,0.00022523,0.650449349,0.515883778,pos,ns,0.1338453,Ptgs1,Ptgs1_Intron,2,36203302,36203351,36203302,36203303,50,+,CGCCAGCCCAATCTCGCCTCCTATATTCAGAGTTGATTAGACGCTATTTC,"Intron (Gm13429-201/Gm13429-201, intron 1 of 1)",2,36230426,36252272,21847,1,Ptgs1-201,-27075,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,5,19224,ENSMUSG00000047250,conserved gene but different region,2,36203039,36203344,306,*,306,27,0.640522876,0.862511744,0.088235294,2.41E-19,CpGisland,TRUE,U3,Pr-B
533,cg04627479,0.0000276,0.00000445,6.215624532,1.65E-09,gain,yes,0.00000764,0.00000755,1.011749712,0.312446765,pos,ns,0.007508719,0.002212398,3.393927417,0.000778532,pos,ns,3.108723395,-0.000189524,0.0000761,-2.490973859,0.013262277,neg,ns,0.098905363,Dlx6,Dlx6_Intron,6,6849974,6850023,6850022,6850023,50,-,AGCGTCCTGGCAACAGCGCAATTTTCTATCATCAAGGATAAATGGCATCG,"Intron (Dlx6os1-202/Dlx6os1-202, intron 1 of 1)",6,6863334,6868568,5235,1,Dlx6-202,-13360,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,36,13396,ENSMUSG00000029754,mapped to different genes,6,6849927,6850023,97,*,97,10,0.567010309,1.286472149,0.103092784,4.63E-08,CpGisland,TRUE,U13,Hc-P
20215,cg20718192,0.000022,0.00000269,8.19444262,6.70E-15,gain,yes,0.00000462,0.00000456,1.011683528,0.312478368,pos,ns,0.002749663,0.001337353,2.056047775,0.040614925,pos,ns,1.391314346,-0.0000442,0.000046,-0.960037387,0.33778458,neg,ns,0.078523817,Unc79,Unc79_Intron,12,102949933,102949982,102949933,102949934,50,-,CGGCAAATCAGGGGCGGGGAACTGTCAGTTGCAACCAAAGCCTGCCTGGC,"Intron (Unc79-202/Unc79, intron 1 of 48)",12,102948859,103184001,235143,1,Unc79-202,1074,Unc79-202;Unc79-208,Unc79;Unc79,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,24,217843,ENSMUSG00000021198,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25864,cg11658262,0.0000295,0.00000728,4.051876151,0.0000643,gain,ns,0.0000125,0.0000124,1.011520417,0.312556263,pos,ns,0.016063356,0.003622648,4.434147882,0.0000128,pos,ns,4.891118089,-0.000435515,0.000124583,-3.495797646,0.000541621,neg,ns,0.140368716,Pax7,Pax7_Intron,4,139824764,139824813,139824812,139824813,50,-,GTCCTTGTACACACAATCAAAACAGCTTCCTCCAGTGTAGCAAACGACCG,"Intron (Pax7-201/Pax7, intron 4 of 8)",4,139737062,139833528,96467,2,Pax7-201,8715,Pax7-201;Pax7-202,Pax7;Pax7,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,27,18509,ENSMUSG00000028736,conserved gene and region,4,139824796,139824926,131,*,131,11,0.564885496,1.200833333,0.083969466,6.93E-08,CpGisland,TRUE,U13,Hc-P
14308,cg04195911,0.0000182,0.0000152,1.194425903,0.233224501,gain,ns,-0.0000262,0.0000259,-1.011335569,0.312644554,neg,ns,0.020058442,0.007577866,2.646977754,0.008536384,pos,ns,2.06872604,-0.000540424,0.000260602,-2.073749055,0.038928052,neg,ns,0.679608866,Retreg2,Retreg2_Exon,1,75144330,75144379,75144330,75144331,50,-,CGCACCTGCTGAGTGTGCCCGAGTTGTGCAGATACCTGGCTGAGAGCTGG,"Exon (Retreg2-201/Retreg2, exon 4 of 9)",1,75142778,75147909,5132,1,Retreg2-204,1552,Cnppd1-202;Cnppd1-208;Cnppd1-201;Cnppd1-206;Cnppd1-207;Retreg2-204;Retreg2-201;Retreg2-208;Retreg2-207;Retreg2-202;Retreg2-203;Retreg2-205;Retreg2-206,Cnppd1;Cnppd1;Cnppd1;Cnppd1;Cnppd1;Retreg2;Retreg2;Retreg2;Retreg2;Retreg2;Retreg2;Retreg2;Retreg2,0;0;0;-2527;-1619;0;0;0;0;0;0;952;-925,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,Exon,3,3,227298,ENSMUSG00000049339,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U4,Pr-F
21464,cg26268148,0.000000649,0.00000202,0.321209655,0.748267966,gain,ns,-0.00000347,0.00000343,-1.011252228,0.312684366,neg,ns,0.001228455,0.001005085,1.222240297,0.22254527,pos,ns,0.652581632,-0.0000505,0.0000346,-1.460998169,0.145028755,neg,ns,0.962760427,Magoh,Magoh_Exon,4,107887193,107887242,107887193,107887194,50,-,CGAGTATTTTATTATCTTGTCCAGGACCTGAAGTGTTTGGTCTTCAGTCT,"Exon (Magoh-201/Magoh, exon 5 of 5)",4,107879755,107887424,7670,1,Magoh-201,7438,Czib-212;Czib-203;Czib-202;Czib-204;Czib-205;Czib-206;Czib-210;Czib-207;Czib-209;Czib-201;Czib-208;Czib-213;Magoh-201;Magoh-202,Czib;Czib;Czib;Czib;Czib;Czib;Czib;Czib;Czib;Czib;Czib;Czib;Magoh;Magoh,-2571;-2583;-2607;-2621;-2624;-2627;-2656;-2657;-2666;-2877;-2985;-2998;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,17149,ENSMUSG00000028609,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10712,cg17379674,-0.0000179,0.00000909,-1.964270748,0.050391844,loss,ns,-0.0000156,0.0000154,-1.011130579,0.312742485,neg,ns,-0.00260729,0.004523145,-0.576432974,0.564740849,neg,ns,0.248150798,-0.000193636,0.000155551,-1.244844136,0.214129284,neg,ns,0.50158174,Zfp608,Zfp608_Promoter,18,54997615,54997664,54997663,54997664,50,+,CGTTTCACTTTCGGCTGTTTCTTGTCTGTAAAATTACAGTCATTTGCACG,Promoter (5-6kb),18,54888723,54992555,103833,2,Zfp608-203,-5060,NA,NA,NA,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,3,32,269023,ENSMUSG00000052713,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13948,cg18433728,-0.0000284,0.00000709,-4.000804096,0.000079,loss,ns,-0.0000122,0.000012,-1.0110556,0.31277831,neg,ns,-0.006917264,0.003529472,-1.959858228,0.050908016,neg,ns,1.293213828,0.000263516,0.000121378,2.171035378,0.030686925,pos,ns,0.872560421,Chn1,Chn1_Exon,2,73659761,73659810,73659761,73659762,50,+,CGAATAAGCAAAGAGTTTCAGAGGTTGCCAGATTGTCACAGACGACTTTG,"Exon (Chn1os1-201/Chn1os1-201, exon 2 of 2)",2,73610660,73775346,164687,2,Chn1-203,115536,Chn1-203;Chn1-210;Chn1-202;Chn1-209;Chn1-204;Chn1-213;Chn1-208;Chn1-206;Chn1-207,Chn1;Chn1;Chn1;Chn1;Chn1;Chn1;Chn1;Chn1;Chn1,0;0;0;0;0;0;0;-4703;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,4,108699,ENSMUSG00000056486,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11251,cg00779472,0.00000176,0.00000267,0.657869469,0.511110221,gain,ns,0.00000459,0.00000454,1.011035356,0.312787983,pos,ns,0.00137467,0.00133034,1.033322072,0.302258645,pos,ns,0.519621269,-0.00000388,0.0000458,-0.084840864,0.93244267,neg,ns,0.946319092,Cd40lg,Cd40lg_Intergenic_upstream,X,57179689,57179738,57179737,57179738,50,+,AGTTCAAAGGTTTCCACTTTGTTAGATGTACACCTTTTAATGATCCCCCG,Distal Intergenic,20,57212143,57224042,11900,1,Cd40lg-201,-32405,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,4,21947,ENSMUSG00000031132,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19217,cg20802456,0.0000505,0.0000108,4.666193491,0.00000457,gain,ns,-0.0000186,0.0000184,-1.010958505,0.312824706,neg,ns,-0.008109741,0.005387352,-1.50532961,0.133257557,neg,ns,0.875308152,0.000501445,0.000185271,2.706555847,0.007175166,pos,ns,0.736215542,Wnt1,Wnt1_Intergenic_downstream,15,98798269,98798318,98798269,98798270,50,-,CGCCCAGGTTGTGCGGCATTTGGGGAGTTTAATGAATTGTCCATCACGCC,Distal Intergenic,15,98789857,98793837,3981,1,Wnt1-201,8461,Wnt1-201,Wnt1,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,12,22408,ENSMUSG00000022997,conserved gene and region,15,98798040,98798354,315,*,315,21,0.666666667,0.6125,0.066666667,1.17E-12,CpGisland,TRUE,U13,Hc-P
13538,cg22356523,-0.0000794,0.0000209,-3.797000097,0.000176189,loss,ns,0.0000359,0.0000355,1.010883923,0.312860348,pos,ns,0.050865511,0.010402988,4.889509732,0.00000163,pos,ns,5.788982162,-0.001448771,0.000357758,-4.049585642,0.0000649,neg,ns,0.479015961,Gm10172,Gm10172_Intergenic_downstream,7,71216794,71216843,71216794,71216795,50,-,CGATTACACTTGGCCCTGCCCTTGAACACCCAGGTGTAACCTTGAAATTC,Distal Intergenic,7,71332363,71332921,559,2,Gm10172-201,116127,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,31,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26726,cg15469463,-0.0000121,0.00000357,-3.398138077,0.000767074,loss,ns,-0.00000613,0.00000606,-1.010817359,0.31289216,neg,ns,-0.000342862,0.001776046,-0.193048136,0.847047686,neg,ns,0.07209214,-0.00009,0.0000611,-1.4730249,0.141758924,neg,ns,0.938609848,Huwe1,Huwe1_Intron,X,151906201,151906250,151906201,151906202,50,-,CGCACCCAGTCTGGAAAGGGAAGTCCTCTGTTGTTCAGTGAAGGCTCTGC,"Intron (Huwe1-201/Huwe1, intron 51 of 82)",20,151803327,151935417,132091,1,Huwe1-201,102874,Huwe1-201;Huwe1-202;Huwe1-219;Huwe1-208;Huwe1-215,Huwe1;Huwe1;Huwe1;Huwe1;Huwe1,0;0;0;-2595;-2595,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,28,59026,ENSMUSG00000025261,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4994,cg20494382,0.00000354,0.00000364,0.974595927,0.33052061,gain,ns,0.00000624,0.00000618,1.010794542,0.312903065,pos,ns,0.005281817,0.001809482,2.918967003,0.003769043,pos,ns,2.42376895,-0.000206362,0.0000622,-3.316226718,0.001020818,neg,ns,0.917404681,Ankrd28,Ankrd28_Exon,14,31711941,31711990,31711989,31711990,50,+,TCTTGAATATCCACTGCATTCTGTGGTTCTGCATTTCCTATTAATAGCCG,"Exon (Ankrd28-207/Ankrd28, exon 19 of 28)",14,31698768,31780393,81626,2,Ankrd28-207,68403,Ankrd28-207;Ankrd28-201;Ankrd28-204;Ankrd28-206,Ankrd28;Ankrd28;Ankrd28;Ankrd28,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,5,105522,ENSMUSG00000014496,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3880,cg24555998,-0.00000467,0.00000209,-2.229520369,0.026495435,loss,ns,0.00000359,0.00000356,1.01074573,0.312926396,pos,ns,0.002033236,0.001041882,1.951503796,0.0518975,pos,ns,1.284853564,-0.000042,0.0000358,-1.172910378,0.241732215,neg,ns,0.94393959,Nsd3,Nsd3_threeUTR,8,25676763,25676812,25676763,25676764,50,+,CGATTGAGGAAACTGTGGACTGAGATTCCTGTACAATTTCATCCCAGAAA,3' UTR,8,25601601,25677214,75614,1,Nsd3-211,75162,Nsd3-211;Nsd3-203;Nsd3-208;Nsd3-204;Nsd3-206;Nsd3-201;Nsd3-205,Nsd3;Nsd3;Nsd3;Nsd3;Nsd3;Nsd3;Nsd3,0;74479;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,14,234135,ENSMUSG00000054823,conserved gene but different region,8,25676544,25676764,221,*,221,19,0.601809955,0.956056466,0.085972851,1.56E-13,CpGisland,TRUE,U10,Tr-S
7473,cg14678919,0.0000708,0.0000133,5.32492032,0.000000194,gain,yes,-0.0000228,0.0000226,-1.01048738,0.313049895,neg,ns,0.024052291,0.006620014,3.633269008,0.000327433,pos,ns,3.484877084,-0.000638791,0.000227662,-2.805878937,0.005335268,neg,ns,0.418243899,Ppp2r2b,Ppp2r2b_Exon,18,42738000,42738049,42738000,42738001,50,+,CGGGTTCATGGCTCTGGAATGTGCTGTAAACATTGTATTCACCCCTACGA,"Exon (Ppp2r2b-204/Ppp2r2b, exon 3 of 9)",18,42637432,42899503,262072,2,Ppp2r2b-204,161454,Ppp2r2b-204;Ppp2r2b-202;Ppp2r2b-201;Ppp2r2b-203;Ppp2r2b-208;Ppp2r2b-207;Ppp2r2b-205,Ppp2r2b;Ppp2r2b;Ppp2r2b;Ppp2r2b;Ppp2r2b;Ppp2r2b;Ppp2r2b,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,15,72930,ENSMUSG00000024500,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2141,cg06124187,-0.00000212,0.00000143,-1.487558233,0.137883875,loss,ns,0.00000245,0.00000242,1.01034262,0.313119109,pos,ns,0.000926744,0.000710064,1.305156276,0.192807546,pos,ns,0.714875974,-0.000013,0.0000244,-0.53279828,0.594554938,neg,ns,0.041074404,Mllt10,Mllt10_fiveUTR,2,18065070,18065119,18065070,18065071,50,-,CGAGGTCTCCCATAGTATGAAGGAGATGATTGGAGGCTGTTGCGTTTGCT,5' UTR,2,18055237,18212387,157151,1,Mllt10-201,9833,Mllt10-201;Mllt10-208;Mllt10-203;Mllt10-210;Mllt10-204;Mllt10-205;Mllt10-209;Mllt10-211,Mllt10;Mllt10;Mllt10;Mllt10;Mllt10;Mllt10;Mllt10;Mllt10,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,4,17354,ENSMUSG00000026743,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
16549,cg07266482,0.00000867,0.00000438,1.978758555,0.048727964,gain,ns,-0.00000752,0.00000744,-1.010234758,0.313170688,neg,ns,-0.001727464,0.002181099,-0.792015517,0.428957262,neg,ns,0.367585976,0.000173541,0.000075,2.313640274,0.02134135,pos,ns,0.945429579,Camkmt,Camkmt_Intron,17,85394357,85394406,85394357,85394358,50,-,CGAACAGAATGATAGCAAGATAGAGGCTCCCGCAAATGGAATGATAAAAG,"Intron (Camkmt-201/Camkmt, intron 5 of 10)",17,85090552,85458588,368037,1,Camkmt-201,303805,Camkmt-201,Camkmt,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,41,44,73582,ENSMUSG00000071037,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14159,cg15855274,0.0000474,0.00000463,10.23164415,2.32E-21,gain,yes,0.00000795,0.00000787,1.010208963,0.313183023,pos,ns,0.000949537,0.002306195,0.411732958,0.680819696,pos,ns,0.166967889,0.000201527,0.0000793,2.541012431,0.011540425,pos,ns,0.120951051,Hoxd3,Hoxd3_Promoter,2,74711811,74711860,74711859,74711860,50,+,ACTTGGTAATAGACCTTTTTATGACCTATTTGCGGTCGTCATTGGCTGCG,Promoter (<=1kb),2,74711927,74748271,36345,1,Hoxd3-203,-67,Hoxd3-203;Hoxd4-203;Hoxd8-203;Hoxd8-201;Hoxd8-202,Hoxd3;Hoxd4;Hoxd8;Hoxd8;Hoxd8,0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,7,24,15434,ENSMUSG00000079277,mapped to different genes,2,74711843,74711929,87,*,87,9,0.632183908,1.044,0.103448276,0.000000274,CpGisland,TRUE,U3,Pr-B
12590,cg05661289,0.00000641,0.0000028,2.286076508,0.022924177,gain,ns,-0.00000481,0.00000476,-1.010124279,0.313223524,neg,ns,-0.001674187,0.001395498,-1.199705757,0.231169733,neg,ns,0.636069028,-0.0000446,0.000048,-0.928949902,0.353637807,neg,ns,0.921528924,Ube2k,Ube2k_threeUTR,5,65594456,65594505,65594456,65594457,50,+,CGACTTTGGGCACATGTGTATGCTGGAGCACCAGTTTCTAGTCCAGAATA,3' UTR,5,65537233,65598988,61756,1,Ube2k-201,57223,Ube2k-201;Ube2k-203;Ube2k-204;Ube2k-206;Ube2k-210;Ube2k-207;Ube2k-209;Ube2k-202;Ube2k-205;Ube2k-208,Ube2k;Ube2k;Ube2k;Ube2k;Ube2k;Ube2k;Ube2k;Ube2k;Ube2k;Ube2k,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,7,53323,ENSMUSG00000029203,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26634,cg18966903,0.0000219,0.00000533,4.104151629,0.0000519,gain,ns,-0.00000915,0.00000906,-1.010062656,0.313252997,neg,ns,-0.003225795,0.002654126,-1.21538872,0.225142671,neg,ns,0.647542187,-0.000143275,0.0000913,-1.56969916,0.117505226,neg,ns,0.833505115,Pex14,Pex14_Intron,4,149046855,149046904,149046855,149046856,50,+,CGCTGATGCTAGCACTCGTGAAAAAATGCAACGGGCTAATTATGAAGCTA,"Intron (Pex14-201/Pex14, intron 2 of 8)",4,148960535,149099876,139342,2,Pex14-201,52972,Pex14-201;Pex14-202;Pex14-205;Pex14-203;Pex14-204,Pex14;Pex14;Pex14;Pex14;Pex14,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,41,48,56273,ENSMUSG00000028975,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3258,cg00977108,0.0000659,0.00000677,9.734387448,1.03E-19,gain,yes,-0.0000116,0.0000115,-1.010045007,0.313261439,neg,ns,0.010166231,0.00336841,3.018109879,0.002754583,pos,ns,2.55994407,-0.00013018,0.000115839,-1.123800952,0.261966967,neg,ns,0.215700493,Kcnma1,Kcnma1_Intron,14,23386084,23386133,23386132,23386133,50,+,CTGACAAGCTGACAGAATAAATACTCCAGCCTTTAAGAAGCCATCTAACG,"Intron (Kcnma1-207/Kcnma1, intron 19 of 27)",14,23289431,23803304,513874,2,Kcnma1-207,417171,Kcnma1-207;Kcnma1-210;Kcnma1-205;Kcnma1-201;Kcnma1-208;Kcnma1-209;Kcnma1-212;Kcnma1-204;Kcnma1-202;Kcnma1-211;Kcnma1-229;Kcnma1-234;Kcnma1-223;Kcnma1-214;Kcnma1-216;Kcnma1-219;Kcnma1-220;Kcnma1-224;Kcnma1-233;Kcnma1-236;Kcnma1-237;Kcnma1-213;Kcnma1-228;Kcnma1-203;Kcnma1-206;Kcnma1-221;Kcnma1-225;Kcnma1-226;Kcnma1-230;Kcnma1-235;Kcnma1-217,Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,41,16531,ENSMUSG00000063142,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18713,cg20382445,0.000065,0.0000118,5.488247038,8.45E-08,gain,yes,-0.0000203,0.0000201,-1.009889912,0.313335628,neg,ns,0.020409421,0.005897522,3.460677572,0.000614391,pos,ns,3.211555057,-0.000558488,0.000202815,-2.753676768,0.006240771,neg,ns,0.365901531,Nfe2l1,Nfe2l1_Exon,11,96827463,96827512,96827463,96827464,50,-,CGCCGGGCAGTGAAGTAATTGTCCAGGTCTATGCTCTTGGGGTGGATACC,"Exon (Nfe2l1-211/Nfe2l1, exon 2 of 5)",11,96817414,96829502,12089,2,Nfe2l1-211,1990,Nfe2l1-210;Nfe2l1-212;Nfe2l1-211;Nfe2l1-201;Nfe2l1-203;Nfe2l1-204;Nfe2l1-202;Nfe2l1-205;Nfe2l1-209;Nfe2l1-206;Nfe2l1-208;Nfe2l1-207,Nfe2l1;Nfe2l1;Nfe2l1;Nfe2l1;Nfe2l1;Nfe2l1;Nfe2l1;Nfe2l1;Nfe2l1;Nfe2l1;Nfe2l1;Nfe2l1,0;0;0;0;0;0;0;0;0;-4738;0;1989,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,4,18023,ENSMUSG00000038615,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24453,cg22874685,-0.0000247,0.00000847,-2.911654299,0.00385596,loss,ns,0.0000145,0.0000144,1.009839884,0.313359561,pos,ns,0.005192048,0.004214295,1.232008649,0.218879513,pos,ns,0.659794885,-0.000306352,0.000144929,-2.113803929,0.035330484,neg,ns,0.728770907,Ago3,Ago3_Exon,4,126371738,126371787,126371738,126371739,50,+,CGTTTGATGACTGGCAGGCCTCCTTGTTACATTACAAACACGGTATTTCC,"Exon (Ago3-201/Ago3, exon 7 of 19)",4,126332732,126429556,96825,2,Ago3-201,57769,Ago3-201;Ago3-205,Ago3;Ago3,0;32507,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,8,214150,ENSMUSG00000028842,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1532,cg27379398,-0.00000147,0.00000228,-0.643594244,0.520314412,loss,ns,0.00000391,0.00000387,1.009775359,0.313390432,pos,ns,0.00243999,0.001133149,2.153282655,0.032067484,pos,ns,1.493935116,-0.0000578,0.000039,-1.483498713,0.138957921,neg,ns,0.940574842,Gm4940,Gm4940_Intergenic_downstream,15,13461805,13461854,13461853,13461854,50,+,TTTGAACTGCTGAGGTCCACATAAATTCAGGTTATCCATACAGCCGTGCG,Distal Intergenic,15,13452316,13453112,797,1,Gm4940-201,9489,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,239338,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25532,cg07019912,0.0000229,0.00000709,3.234559499,0.001349793,gain,ns,0.0000122,0.000012,1.009593797,0.313477306,pos,ns,-0.005432134,0.003529832,-1.53892131,0.124843577,neg,ns,0.903633797,0.0000688,0.000121391,0.566432323,0.571509769,pos,ns,0.849652062,Ebf3,Ebf3_Intron,7,137198989,137199038,137199037,137199038,50,-,TTTTATCCAGTAGCTCACATCACAGAACATCCAAGCAATGCACACACTCG,"Intron (Gm45278-201/Gm45278-201, intron 1 of 1)",7,137193673,137314445,120773,2,Ebf3-204,115407,Ebf3-204;Ebf3-201;Ebf3-202;Ebf3-203;Ebf3-208;Ebf3-205,Ebf3;Ebf3;Ebf3;Ebf3;Ebf3;Ebf3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,62,84,13593,ENSMUSG00000010476,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8698,cg18897683,0.000104201,0.0000124,8.415733225,1.46E-15,gain,yes,-0.0000212,0.000021,-1.009493096,0.313525496,neg,ns,0.014859376,0.006162473,2.411268317,0.016478393,pos,ns,1.783085137,-0.000441736,0.000211927,-2.084376505,0.037944306,neg,ns,0.072478765,Gm31907,Gm31907_fiveUTR,18,45559471,45559520,45559471,45559472,50,+,CGCATTGCGCAGGGTGCACCACCGCTTGGTCTCCCTGCAGCTTTAACAGC,Promoter (<=1kb),18,45501590,45560130,58541,2,Gm31907-202,610,Gm31907-202;Kcnn2-205;Kcnn2-201;Kcnn2-207;Kcnn2-206;Kcnn2-202;Kcnn2-208;Kcnn2-203,Gm31907;Kcnn2;Kcnn2;Kcnn2;Kcnn2;Kcnn2;Kcnn2;Kcnn2,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,15,15,102634286,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
6067,cg07638422,0.0000504,0.00000751,6.707651123,9.38E-11,gain,yes,0.0000129,0.0000128,1.009424397,0.313558375,pos,ns,0.009444731,0.003737403,2.527084324,0.011998466,pos,ns,1.92087428,-0.000174152,0.000128529,-1.35496126,0.176416451,neg,ns,0.155655765,Psd2,Psd2_Intergenic_upstream,18,35933635,35933684,35933683,35933684,50,+,TTAATCTGCAGTGGCTGGAGGTGACCTTCTGGAGACGGCGATTAATCACG,Distal Intergenic,18,35964830,36014712,49883,1,Psd2-201,-31146,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,24,29,74002,ENSMUSG00000024347,mapped to different genes,18,35933670,35933711,42,*,42,10,0.761904762,1.647058824,0.238095238,3.06E-12,CpGisland,TRUE,U13,Hc-P
597,cg17517572,-0.0000192,0.00000431,-4.461084192,0.0000114,loss,ns,0.00000739,0.00000732,1.009377257,0.313580937,pos,ns,-0.005890081,0.002144496,-2.746604531,0.006373599,neg,ns,2.19561529,-0.00000209,0.0000737,-0.028375343,0.977381048,neg,ns,0.951740121,Rbfox1,Rbfox1_Intron,16,7149434,7149483,7149434,7149435,50,+,CGGTTGCCTTTTTCATTATAGGTTCGGGAAATAGGCAGCAATTCGATTAT,"Intron (Rbfox1-205/Rbfox1, intron 4 of 11)",16,5885355,7353045,1467691,1,Rbfox1-205,1264079,Rbfox1-205;Rbfox1-201;Rbfox1-202;Rbfox1-203,Rbfox1;Rbfox1;Rbfox1;Rbfox1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,35,268859,ENSMUSG00000008658,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26204,cg26798396,-0.000000167,0.00000346,-0.048149405,0.961628178,loss,ns,-0.00000593,0.00000588,-1.009229905,0.31365147,neg,ns,-0.001189933,0.001721662,-0.691153418,0.489986364,neg,ns,0.309816006,0.0000537,0.0000592,0.90638705,0.365434987,pos,ns,0.923847449,Gm5857,Gm5857_Intergenic_downstream,3,144395186,144395235,144395234,144395235,50,-,TCATCTGGCTTCCAGAAATGGAACAAGAGCCCTTGAACAGCAGAAATACG,Distal Intergenic,3,144427180,144427672,493,2,Gm5857-201,32486,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,9,545572,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22522,cg04499392,-0.0000573,0.0000101,-5.646466944,0.000000037,loss,yes,0.0000174,0.0000172,1.008945257,0.313787751,pos,ns,-0.004765461,0.005050822,-0.943502052,0.346158897,neg,ns,0.460724502,0.000149943,0.000173697,0.863240702,0.388672504,pos,ns,0.729764345,Gm13973,Gm13973_Intron,2,114912016,114912065,114912016,114912017,50,-,CGATCAAGGTATGGGGCATTTCCTGGGGATTAATGACCAGCTGGGGGAGT,"Intron (Gm13974-201/Gm13974-201, intron 5 of 8)",2,115036419,115037312,894,2,Gm13973-201,125296,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,13,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7011,cg06844335,-0.0000707,0.0000124,-5.707905015,2.68E-08,loss,yes,-0.0000212,0.000021,-1.008930411,0.31379486,neg,ns,-0.01390632,0.006166686,-2.255071778,0.024826175,neg,ns,1.605090196,-0.0000383,0.000212072,-0.180482801,0.856891485,neg,ns,0.758037619,Gm12136,Gm12136_Intergenic_downstream,11,40555375,40555424,40555375,40555376,50,+,CGCTGCCACAGGAGGAACTTAAATAATTTAAGACTCATAATGCCTCTGAT,Distal Intergenic,11,40569317,40570525,1209,2,Gm12136-201,15101,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,382508,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9117,cg25065244,-0.00000726,0.00000132,-5.519002638,7.21E-08,loss,yes,0.00000226,0.00000224,1.008856894,0.313830065,pos,ns,-0.001242775,0.000655015,-1.897322475,0.058714486,neg,ns,1.231254733,0.0000404,0.0000225,1.791999363,0.074108193,pos,ns,0.973278663,Ubr2,Ubr2_threeUTR,17,46980347,46980396,46980347,46980348,50,+,CGAGAGGTCTGCGACTGAAAACTCTCTGTCGTGGTCATCTGTCACATAAT,3' UTR,17,46928295,47010520,82226,2,Ubr2-202,30124,Ubr2-202;Ubr2-205;Ubr2-201;Ubr2-206,Ubr2;Ubr2;Ubr2;Ubr2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,4,224826,ENSMUSG00000023977,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
254,cg19358519,0.0000422,0.0000142,2.974786053,0.003162317,gain,ns,-0.0000243,0.0000241,-1.008752571,0.313880026,neg,ns,0.003767988,0.00705385,0.534174694,0.593603531,pos,ns,0.226503524,0.0000831,0.000242581,0.342538352,0.732177921,pos,ns,0.665546519,Cdk14,Cdk14_Intron,5,4835015,4835064,4835063,4835064,50,-,TGGGAGACCACAGATTAGAGTACACTGGAGTGTGTATATTAGGTCACTCG,"Intron (Cdk14-203/Cdk14, intron 13 of 13)",5,4803391,5266068,462678,2,Cdk14-203,431004,Cdk14-203;Cdk14-201;Cdk14-202;Cdk14-204,Cdk14;Cdk14;Cdk14;Cdk14,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,16,18647,ENSMUSG00000028926,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26616,cg27662445,-0.000000166,0.00000225,-0.074002885,0.941055818,loss,ns,-0.00000385,0.00000382,-1.00874072,0.313885702,neg,ns,-0.000562014,0.001118044,-0.502676024,0.615548981,neg,ns,0.210737383,-0.0000361,0.0000384,-0.939415419,0.34824888,neg,ns,0.953773953,Pex14,Pex14_Intron,4,148988937,148988986,148988985,148988986,50,-,TGGAAGCATTTGCTTCGACCTTGCTCTTCTCATTGGGGCATGAAATTACG,"Intron (Pex14-201/Pex14, intron 3 of 8)",4,148960535,149099876,139342,2,Pex14-201,110890,Pex14-201;Pex14-202;Pex14-205;Pex14-203,Pex14;Pex14;Pex14;Pex14,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,41,48,56273,ENSMUSG00000028975,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6831,cg13427357,0.0000663,0.000014,4.731307847,0.0000034,gain,ns,-0.000024,0.0000238,-1.00868183,0.313913907,neg,ns,0.015047259,0.006969908,2.158889184,0.031625818,pos,ns,1.499958237,-0.000473995,0.000239695,-1.977493991,0.048871325,neg,ns,0.268808926,Gm12129,Gm12129_Intergenic_downstream,11,38694909,38694958,38694909,38694910,50,-,CGCTGCATGGTTTGCTGTTTGCTTAAGCAAAAATCCAATTTCTGGAGAGG,Distal Intergenic,11,38219069,38220215,1147,1,Gm12129-201,475889,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,11,276941,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18602,cg01351315,0.0000691,0.00000873,7.919315334,4.30E-14,gain,yes,0.000015,0.0000148,1.008653995,0.31392724,pos,ns,0.011140189,0.00434433,2.564305214,0.010809174,pos,ns,1.966207483,-0.0000824,0.000149401,-0.551561753,0.581645998,neg,ns,0.565560784,Hoxb5,Hoxb5_Intergenic_downstream,11,96306952,96307001,96306952,96306953,50,+,CGTAAAAATCGCCGAGAAGTCAGACAGATACCCCTCACTGGCTCGAGAAA,Distal Intergenic,11,96303512,96306120,2609,1,Hoxb5-201,3440,Hoxb5-202;Hoxb5-201,Hoxb5;Hoxb5,0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,34,15413,ENSMUSG00000038700,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
2551,cg23325379,-0.00000344,0.00000224,-1.532730546,0.126362128,loss,ns,-0.00000384,0.00000381,-1.008304004,0.314094908,neg,ns,0.000854298,0.001116083,0.765442687,0.444590347,pos,ns,0.352039971,0.000024,0.0000384,0.62460442,0.532690146,pos,ns,0.937392635,Ppp3cb,Ppp3cb_Exon,14,20501527,20501576,20501575,20501576,50,+,TGTGCGGTGTTCAGAGAATTGAAACCATCTTGCTGTACAGCATCTTTCCG,"Exon (Ppp3cb-202/Ppp3cb, exon 14 of 14)",14,20499364,20546573,47210,2,Ppp3cb-202,44997,Mss51-201;Ppp3cb-202;Ppp3cb-205;Ppp3cb-201;Ppp3cb-208,Mss51;Ppp3cb;Ppp3cb;Ppp3cb;Ppp3cb,-4626;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,10,19056,ENSMUSG00000021816,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26013,cg25847819,-0.0000557,0.00000856,-6.509390554,3.03E-10,loss,yes,-0.0000147,0.0000145,-1.008072755,0.314205724,neg,ns,-0.008987403,0.004260957,-2.109245407,0.035724988,neg,ns,1.447027903,0.0000806,0.000146534,0.550171758,0.582597761,pos,ns,0.770479733,C2cd5,C2cd5_threeUTR,6,143072590,143072639,143072590,143072591,50,-,CGACTGTAGGACTTGGAAGGTGAAAAGGAATAAGTTTGGTTTTTCAGAGG,3' UTR,6,143010920,143100107,89188,2,C2cd5-201,27468,C2cd5-201;C2cd5-203;C2cd5-217;C2cd5-202;C2cd5-213;C2cd5-204;C2cd5-207;C2cd5-205;C2cd5-214;C2cd5-210,C2cd5;C2cd5;C2cd5;C2cd5;C2cd5;C2cd5;C2cd5;C2cd5;C2cd5;C2cd5,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,8,74741,ENSMUSG00000030279,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23311,cg13709380,-0.000000419,0.000000644,-0.65099432,0.515532395,loss,ns,-0.0000011,0.00000109,-1.007974936,0.314252607,neg,ns,-0.000585731,0.000320655,-1.826671149,0.068710756,neg,ns,1.162975273,0.0000137,0.000011,1.243865514,0.214488806,pos,ns,0.988715201,Eri3,Eri3_Intron,4,117673458,117673507,117673458,117673459,50,-,CGCCCAGCGGCCGGGGGCCGTCAAGGGAGAAATTACACATTTACTCTGCC,"Intron (Eri3-201/Eri3, intron 8 of 8)",4,117550365,117674297,123933,1,Eri3-201,123093,Dmap1-206;Dmap1-201;Dmap1-204;Eri3-201;Eri3-206;Eri3-203,Dmap1;Dmap1;Dmap1;Eri3;Eri3;Eri3,8746;8766;8476;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,82,97,140546,ENSMUSG00000033423,conserved gene and region,4,117673395,117673477,83,*,83,8,0.710843374,0.801932367,0.096385542,0.00000291,CpGisland,TRUE,U10,Tr-S
16957,cg06186992,0.0000287,0.00000701,4.093255053,0.0000543,gain,ns,0.000012,0.0000119,1.00796348,0.314258098,pos,ns,0.010772432,0.003490465,3.086245764,0.002209952,pos,ns,2.655617191,-0.000155106,0.000120037,-1.292151007,0.197267256,neg,ns,0.2194533,Zfp423,Zfp423_threeUTR,8,87662383,87662432,87662431,87662432,50,-,CAAATGACACTTTGATTGGATGTAATGTTCAAATGGCCCTCCCCACGGCG,3' UTR,8,87661810,87804439,142630,2,Zfp423-203,142007,Zfp423-203;Zfp423-202;Zfp423-201,Zfp423;Zfp423;Zfp423,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,53,94187,ENSMUSG00000045333,conserved gene and region,8,87662428,87662690,263,*,263,25,0.619771863,0.998329791,0.095057034,8.88E-19,CpGisland,TRUE,NA,NRS
26575,cg04664817,0.00000538,0.00000463,1.162056025,0.246106582,gain,ns,-0.00000792,0.00000786,-1.007901844,0.314287642,neg,ns,-0.003520934,0.00230346,-1.528541105,0.127397941,neg,ns,0.894837589,0.000017,0.0000792,0.214539722,0.83026725,pos,ns,0.890273712,Casz1,Casz1_Intron,4,148924550,148924599,148924550,148924551,50,-,CGCCCAAAGGGGATACTGCATCCTTAGGAAGAAATATGTCCTCATTTTTC,"Intron (Casz1-201/Casz1, intron 4 of 15)",4,148804429,148945129,140701,1,Casz1-201,120121,Casz1-201;Casz1-202;Casz1-206,Casz1;Casz1;Casz1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,94,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
881,cg05032059,-0.000102241,0.0000154,-6.658904439,1.26E-10,loss,yes,0.0000263,0.0000261,1.007782764,0.314344726,pos,ns,-0.023112607,0.007641883,-3.024464858,0.002699009,neg,ns,2.568795603,0.000361593,0.000262804,1.375904676,0.169844356,pos,ns,0.700856549,Gm7099,Gm7099_Intergenic_upstream,12,9339229,9339278,9339277,9339278,50,+,AGGAAGTTGTTCATCATCTTGTGTGCATTTCATTAACAATAGTGTACCCG,Distal Intergenic,12,9429547,9430100,554,1,Gm7099-201,-90269,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,5,633030,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23855,cg02739710,0.0000565,0.00000849,6.661677103,1.24E-10,gain,yes,-0.0000145,0.0000144,-1.007646683,0.314409968,neg,ns,0.015175848,0.004224424,3.592406599,0.000380891,pos,ns,3.419199606,-0.000528245,0.000145278,-3.636107417,0.000323995,neg,ns,0.151989189,Gm47062,Gm47062_Intergenic_downstream,9,120603316,120603365,120603316,120603317,50,-,CGGGAGCCCTGACTAGAAAGAGGGTTCTGGAAATGTGGTGTGTTTCTCAT,Distal Intergenic,9,120580135,120582738,2604,1,Gm47062-201,23230,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16813,cg26287259,-0.00017793,0.0000268,-6.632379569,1.47E-10,loss,yes,-0.0000459,0.0000456,-1.007628053,0.314418901,neg,ns,-0.041053989,0.013352307,-3.07467384,0.002294834,neg,ns,2.639248771,-0.000458831,0.000459185,-0.999229456,0.31846287,neg,ns,0.689897252,Vmp1,Vmp1_Intron,11,86593142,86593191,86593142,86593143,50,+,CGGCTAGTATTTTAATGAGTTGTCATTTCCTGTCTGATAAAGATTCTCAC,"Intron (Vmp1-201/Vmp1, intron 10 of 11)",11,86583865,86683836,99972,2,Vmp1-201,90645,Vmp1-201;Vmp1-202;Vmp1-208,Vmp1;Vmp1;Vmp1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,75909,ENSMUSG00000018171,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3035,cg01202361,-0.00000145,0.00000473,-0.306562435,0.759382252,loss,ns,0.0000081,0.00000804,1.007526556,0.314467568,pos,ns,0.006268997,0.002354945,2.662056952,0.008171527,pos,ns,2.087696765,-0.000225447,0.000081,-2.783767823,0.005703165,neg,ns,0.886770488,Lrmda,Lrmda_Intron,14,22457591,22457640,22457591,22457592,50,+,CGTTAGTTGGCACGCTGACATTTTCATATGTGTCTCAGCTAATGCCTCAA,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,437879,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206;Lrmda-202,Lrmda;Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10950,cg08977423,-0.000000971,0.00000136,-0.711457125,0.477336016,loss,ns,0.00000234,0.00000232,1.007428153,0.314514757,pos,ns,0.001126509,0.000679144,1.658718702,0.098183873,pos,ns,1.007959843,-0.0000114,0.0000234,-0.487503249,0.626246309,neg,ns,0.963690617,Tcf7l2,Tcf7l2_Exon,19,55910640,55910689,55910640,55910641,50,-,CGTAGGACAAATCCCCCATCCGCTAGGATGGTTAGTACCACAGTAAGGAG,"Exon (Tcf7l2-213/Tcf7l2, exon 6 of 14)",19,55741820,55933229,191410,1,Tcf7l2-213,168820,Tcf7l2-213;Tcf7l2-201;Tcf7l2-208;Tcf7l2-211;Tcf7l2-212;Tcf7l2-206;Tcf7l2-204;Tcf7l2-205;Tcf7l2-222;Tcf7l2-215;Tcf7l2-214;Tcf7l2-207;Tcf7l2-202;Tcf7l2-209;Tcf7l2-210;Tcf7l2-217;Tcf7l2-220;Tcf7l2-218;Tcf7l2-203;Tcf7l2-216;Tcf7l2-219;Tcf7l2-221,Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,Exon,14,88,21416,ENSMUSG00000024985,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11258,cg27207932,-0.00000367,0.00000189,-1.94035966,0.053242514,loss,ns,-0.00000323,0.00000321,-1.007111182,0.314666792,neg,ns,-0.001126955,0.00094019,-1.198645978,0.231581129,neg,ns,0.635296834,0.0000531,0.0000323,1.641854233,0.101634245,pos,ns,0.96874855,Cd40lg,Cd40lg_Promoter,X,57212053,57212102,57212053,57212054,50,+,CGCTCTTAACTAATCCTGAGTAAGGTGGCCACTTTGACAGTCTTCTCATG,Promoter (<=1kb),20,57212143,57224042,11900,1,Cd40lg-201,-41,Cd40lg-201,Cd40lg,-41,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,4,21947,ENSMUSG00000031132,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7117,cg09343813,0.0000186,0.00000612,3.046632936,0.002513112,gain,ns,-0.0000105,0.0000104,-1.007094824,0.31467464,neg,ns,0.006738121,0.003045484,2.212495617,0.027660997,pos,ns,1.558132175,-0.0001379,0.000104734,-1.316669807,0.188921891,neg,ns,0.861554683,Zfpm2,Zfpm2_Intron,15,41064270,41064319,41064318,41064319,50,-,CTGTTTGATCAAGTGCTAAACCCGTGTGATCAATAGAGAGACAGATGTCG,"Intron (Zfpm2-201/Zfpm2, intron 5 of 7)",15,40655035,41104592,449558,1,Zfpm2-201,409235,Zfpm2-201;Zfpm2-203,Zfpm2;Zfpm2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,41,22762,ENSMUSG00000022306,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16267,cg10643764,-0.00000241,0.00000169,-1.425776162,0.154939126,loss,ns,-0.00000289,0.00000287,-1.007087095,0.314678348,neg,ns,0.001405368,0.000841089,1.670892209,0.095752163,pos,ns,1.018851405,-0.0000603,0.0000289,-2.085654446,0.037827455,neg,ns,0.955304047,Gm12420,Gm12420_Promoter,4,84694504,84694553,84694552,84694553,50,-,ATTTGCAAACTGCTGAAAATCAACGTAATTATCATCAACAATTTGCATCG,Promoter (3-4kb),4,84697863,84698910,1048,1,Gm12420-201,-3359,Gm12420-201,Gm12420,-3310,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,2,624465,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5663,cg11321459,-0.0000154,0.00000853,-1.811381954,0.071049469,loss,ns,0.0000146,0.0000145,1.007008854,0.314715884,pos,ns,-0.002986464,0.00424317,-0.703828381,0.482067979,neg,ns,0.316891715,0.00007,0.000145922,0.479818707,0.631694666,pos,ns,0.517687566,Hdac9,Hdac9_Intron,12,34528939,34528988,34528987,34528988,50,+,ATGAATCAACAACAGCATGGCCCACAGGCACAGAAATAGAACAATGGTCG,"Intron (Hdac9-210/Hdac9, intron 3 of 26)",12,34095877,34917095,821219,2,Hdac9-210,388107,Hdac9-205;Hdac9-204;Hdac9-206;Hdac9-210;Hdac9-207;Hdac9-212;Hdac9-201;Hdac9-211;Hdac9-203;Hdac9-202;Hdac9-209,Hdac9;Hdac9;Hdac9;Hdac9;Hdac9;Hdac9;Hdac9;Hdac9;Hdac9;Hdac9;Hdac9,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,19,31,79221,ENSMUSG00000004698,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1644,cg13487121,0.0000417,0.00000498,8.363093519,2.10E-15,gain,yes,-0.00000853,0.00000847,-1.006914972,0.314760929,neg,ns,0.002432246,0.002480632,0.980494328,0.32760674,pos,ns,0.484647172,0.0000364,0.0000853,0.426968355,0.669698759,pos,ns,0.086570034,Zfp521,Zfp521_fiveUTR,18,13972530,13972579,13972530,13972531,50,+,CGGTAGTCCACATAATAATGGAAAATGGAAGCAAGGCCCCCAAAGCCATC,Promoter (<=1kb),18,13846870,13972548,125679,2,Zfp521-202,0,Zfp521-201;Zfp521-204;Zfp521-203;Zfp521-202,Zfp521;Zfp521;Zfp521;Zfp521,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,81,225207,ENSMUSG00000024420,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
3485,cg14990698,0.000022,0.00000831,2.651815693,0.008417761,gain,ns,-0.0000142,0.0000141,-1.006879764,0.314777823,neg,ns,0.005725401,0.004136214,1.384212678,0.167288994,pos,ns,0.776532631,-0.0000923,0.000142244,-0.6490735,0.516771445,neg,ns,0.863651069,Bcl11a,Bcl11a_Exon,11,24164281,24164330,24164281,24164282,50,+,CGCCCTGCCCGACGTCATGCAGGGCATGGTGCTCAGCTCCATGCAGCACT,"Exon (Bcl11a-201/Bcl11a, exon 4 of 5)",11,24078056,24173194,95139,1,Bcl11a-201,86225,Bcl11a-201;Bcl11a-203;Bcl11a-202;Bcl11a-204;Bcl11a-206,Bcl11a;Bcl11a;Bcl11a;Bcl11a;Bcl11a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,51,98,14025,ENSMUSG00000000861,conserved gene but different region,11,24164175,24164291,117,*,117,13,0.726495727,0.87716263,0.111111111,7.68E-11,CpGisland,TRUE,U10,Tr-S
21412,cg05462355,-0.0000243,0.0000106,-2.296774761,0.022298065,loss,ns,-0.0000181,0.000018,-1.00686227,0.314786217,neg,ns,0.015818811,0.005271701,3.00070326,0.002912226,pos,ns,2.535774976,-0.001234522,0.000181293,-6.809523822,5.09E-11,neg,yes,0.243536046,Sema3f,Sema3f_Intergenic_upstream,9,107723958,107724007,107724006,107724007,50,-,CTCCCTGAAGCAGGAAATTGCATTCTGCCAAGATTAAATGGGCTTGAACG,Distal Intergenic,9,107681500,107710475,28976,2,Sema3f-201,-13532,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,6,20350,ENSMUSG00000034684,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U5,En-Sd
21542,cg17554837,-0.0000103,0.00000663,-1.547217304,0.122831091,loss,ns,-0.0000113,0.0000113,-1.006836855,0.314798413,neg,ns,-0.00795023,0.003298936,-2.409937438,0.016537486,neg,ns,1.781530516,0.000190386,0.00011345,1.67814763,0.094326058,pos,ns,0.828938672,Cyb561d1,Cyb561d1_threeUTR,3,108197435,108197484,108197435,108197436,50,-,CGCCCACCAGCCCCCGCACCACCTGGGAGGAGGCAGCACCTCAGGCAGGC,3' UTR,3,108195687,108200834,5148,2,Cyb561d1-203,3350,Atxn7l2-202;Atxn7l2-201;Atxn7l2-206;Atxn7l2-203;Atxn7l2-204;Cyb561d1-203;Cyb561d1-201;Cyb561d1-204;Cyb561d1-202,Atxn7l2;Atxn7l2;Atxn7l2;Atxn7l2;Atxn7l2;Cyb561d1;Cyb561d1;Cyb561d1;Cyb561d1,0;0;0;0;0;0;0;0;3111,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,72023,ENSMUSG00000048796,conserved gene and region,3,108197366,108197450,85,*,85,8,0.705882353,0.79905993,0.094117647,0.00000348,CpGisland,TRUE,U8,En-Pd
16474,cg25660134,-0.00000424,0.0000021,-2.017588232,0.044495552,loss,ns,-0.00000359,0.00000357,-1.006790852,0.314820488,neg,ns,-0.002696706,0.001046092,-2.577887133,0.010402152,neg,ns,1.982876824,0.0000693,0.000036,1.927337251,0.054851173,pos,ns,0.047579205,Dlst,Dlst_Exon,12,85111471,85111520,85111519,85111520,50,-,CGTCGATAATGTCTTCTTTCTCAACAGGGGAACTGCCCTCTAGGGAGACG,Promoter (<=1kb),12,85110833,85134088,23256,1,Dlst-201,638,Dlst-201;Dlst-205;Dlst-212;Dlst-204;Dlst-206;Dlst-209;Prox2-204,Dlst;Dlst;Dlst;Dlst;Dlst;Dlst;Prox2,0;0;0;0;0;0;-712,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,78920,ENSMUSG00000004789,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
15542,cg16578808,-0.00000968,0.00000481,-2.012134563,0.045070505,loss,ns,0.00000823,0.00000818,1.006787505,0.314822094,pos,ns,-0.004731461,0.002395384,-1.975241539,0.049127563,neg,ns,1.308674783,-0.0000216,0.0000824,-0.262626651,0.793012802,neg,ns,0.92728737,Gm50297,Gm50297_Intergenic_downstream,18,81681857,81681906,81681905,81681906,50,+,ATGATGGTCCTAATTAATAATGATTACTCCCAAAATGTGCAAATGGAACG,Distal Intergenic,18,82261062,82261262,201,2,Gm50297-201,579356,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,17,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3018,cg01128516,-0.0000104,0.00000341,-3.039821571,0.002568939,loss,ns,0.00000584,0.0000058,1.00675463,0.31483787,pos,ns,0.000132567,0.001698153,0.078065561,0.937826266,pos,ns,0.027877608,0.000056,0.0000584,0.958908045,0.338352339,pos,ns,0.927546215,Lrmda,Lrmda_Intron,14,22403045,22403094,22403045,22403046,50,+,CGTTATGTTATATTTATGAGATGAATGTTGGATTCCCTCATTATGTTATC,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,383333,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206;Lrmda-202,Lrmda;Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25065,cg02877097,-0.000000142,0.00000141,-0.100171709,0.920272757,loss,ns,-0.00000242,0.0000024,-1.006632876,0.314896304,neg,ns,-0.000560075,0.00070342,-0.796217323,0.426515035,neg,ns,0.370065655,-0.00000075,0.0000242,-0.031003022,0.975287081,neg,ns,0.968421503,Ythdf2,Ythdf2_Exon,4,132204526,132204575,132204574,132204575,50,-,CTCTTGTTACCATGCTCTGTGCTGCACCAAATATTATACTTAATGGAACG,"Exon (Ythdf2-203/Ythdf2, exon 4 of 5)",4,132184912,132212303,27392,2,Ythdf2-203,7728,Ythdf2-203;Ythdf2-201;Ythdf2-204;Ythdf2-202,Ythdf2;Ythdf2;Ythdf2;Ythdf2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,2,213541,ENSMUSG00000040025,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3806,cg19936176,0.00012969,0.00000596,21.74558504,2.53E-64,gain,yes,-0.0000102,0.0000101,-1.006590258,0.314916759,neg,ns,0.017300222,0.00296834,5.828248956,0.000000014,pos,ns,7.852589833,-0.000243549,0.000102081,-2.385839094,0.017640306,neg,ns,0.147862318,Celf4,Celf4_Exon,18,25486848,25486897,25486848,25486849,50,+,CGATTGGCGTCTTTGGGCCGCTTCAGCTGCACCTTGAGCCTCTTCATGCC,Promoter (<=1kb),18,25479488,25486897,7410,2,Celf4-208,0,Celf4-202;Celf4-201;Celf4-203;Celf4-207;Celf4-206;Celf4-208;Celf4-204;Celf4-210,Celf4;Celf4;Celf4;Celf4;Celf4;Celf4;Celf4;Celf4,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,31,59,108013,ENSMUSG00000024268,conserved gene but different region,18,25486659,25486867,209,*,209,18,0.679425837,0.746873139,0.086124402,7.38E-13,CpGisland,TRUE,NA,NRS
25473,cg05101394,-0.00000724,0.00000174,-4.165201491,0.0000404,loss,ns,0.00000297,0.00000295,1.006515541,0.314952623,pos,ns,-0.000515042,0.000864626,-0.595681754,0.551822489,neg,ns,0.258200604,0.0000158,0.0000297,0.532949912,0.594450092,pos,ns,0.966758857,Gm8762,Gm8762_Intergenic_downstream,1,136777696,136777745,136777696,136777697,50,-,CGAATCAAGTCATTAAAATGTGCAGTTTTTGTTTATTGGAATGAAGCAAT,Distal Intergenic,1,136789182,136789520,339,2,Gm8762-201,11824,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,4,,NA,mapped to different genes,1,136777510,136777697,188,*,188,11,0.473404255,1.044444444,0.058510638,0.00000258,CpGisland,TRUE,U11,Tr-P
14730,cg19327674,0.0000728,0.00000898,8.106353494,1.22E-14,gain,yes,-0.0000154,0.0000153,-1.006479795,0.314969782,neg,ns,0.022125614,0.004470141,4.949645457,0.00000122,pos,ns,5.912717831,-0.000382238,0.000153728,-2.486461013,0.013428258,neg,ns,0.287478641,Rnf165,Rnf165_Exon,18,77484235,77484284,77484283,77484284,50,-,GGAGGGACCTGTGACGTCCTGGAACTGCAGGGTGGGCAGCGGGGTCAGCG,"Exon (Rnf165-201/Rnf165, exon 2 of 8)",18,77456110,77565136,109027,2,Rnf165-201,80852,Rnf165-201;Rnf165-202;Rnf165-204;Rnf165-206,Rnf165;Rnf165;Rnf165;Rnf165,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,21,225743,ENSMUSG00000025427,conserved gene and region,18,77484249,77484433,185,*,185,14,0.735135135,0.625603865,0.075675676,2.48E-09,CpGisland,TRUE,NA,NRS
11367,cg25249359,-0.0000237,0.0000119,-1.987108398,0.047790238,loss,ns,0.0000204,0.0000203,1.006166876,0.315120016,pos,ns,0.000244969,0.005935173,0.041274086,0.967103962,pos,ns,0.014526838,0.0000497,0.00020411,0.243682674,0.807637775,pos,ns,0.727703081,Galnt5,Galnt5_Intergenic_upstream,2,57820868,57820917,57820868,57820869,50,+,CGTTTACAGGTCTACACAGCAGATTAATGAATCTAATTGAGTCTGTAGGG,Distal Intergenic,2,57997884,58039878,41995,1,Galnt5-201,-176967,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,8,241391,ENSMUSG00000026828,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23357,cg26323562,-0.00000339,0.00000447,-0.75953995,0.448106814,loss,ns,-0.00000764,0.00000759,-1.006091351,0.315156283,neg,ns,-0.004882059,0.002224587,-2.194590844,0.028934492,neg,ns,1.538584144,0.0000777,0.0000765,1.015367734,0.310722374,pos,ns,0.887297296,Ret,Ret_Exon,6,118153964,118154013,118153964,118153965,50,+,CGTGAGTGGTACAGGACTCTCTCCAGGCCAGTTCGGGTCTGACATGCCTA,"Exon (Ret-201/Ret, exon 20 of 20)",6,118151745,118197133,45389,2,Ret-201,43120,Ret-201;Ret-202,Ret;Ret,0;43705,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,3,19713,ENSMUSG00000030110,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4185,cg19839747,0.00000631,0.00000643,0.980884281,0.327414691,gain,ns,0.000011,0.0000109,1.005977086,0.315211159,pos,ns,0.003010276,0.003199666,0.940809445,0.347535044,pos,ns,0.459001397,-0.000259601,0.000110036,-2.359230045,0.018932804,neg,ns,0.562376285,Igsf9b,Igsf9b_Exon,9,27324235,27324284,27324235,27324236,50,-,CGTGTCCTGGGAACCAGGCTATGATGGAGGCTACGAGCAGACATTCTCAG,"Exon (Igsf9b-204/Igsf9b, exon 12 of 20)",9,27299204,27357546,58343,1,Igsf9b-204,25031,Igsf9b-204;Igsf9b-201;Igsf9b-202;Igsf9b-203,Igsf9b;Igsf9b;Igsf9b;Igsf9b,0;0;0;-2656,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,235086,ENSMUSG00000034275,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22981,cg10893874,0.00000937,0.00000976,0.960840859,0.337381021,gain,ns,0.0000167,0.0000166,1.005796513,0.315297891,pos,ns,-0.003009462,0.004855434,-0.619813284,0.535836027,neg,ns,0.27096809,0.000207313,0.000166978,1.241556046,0.215338981,pos,ns,0.805568025,Gpc6,Gpc6_Intergenic_upstream,14,116561616,116561665,116561664,116561665,50,+,GAGACAGGCGAAGCTTTTAGAATTCCTTTTGAGCTTTGTTAAATTGAACG,Distal Intergenic,14,116925315,117627198,701884,1,Gpc6-203,-363650,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,5,23888,ENSMUSG00000058571,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3416,cg03458585,-0.000000395,0.00000945,-0.041842692,0.966651038,loss,ns,0.0000161,0.0000161,1.005757362,0.315316698,pos,ns,0.000193743,0.004702625,0.041198867,0.967163878,pos,ns,0.014499932,-0.00012066,0.000161723,-0.74609216,0.456177135,neg,ns,0.827877807,A830031A19Rik,A830031A19Rik_Intron,11,24063112,24063161,24063112,24063113,50,+,CGCTTCATCTGAATGCTAAAATTGTTATTAGGCTACATTAGAGAGATATC,"Intron (A830031A19Rik-201/A830031A19Rik, intron 1 of 2)",11,24048955,24075054,26100,2,A830031A19Rik-201,11893,A830031A19Rik-201,A830031A19Rik,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,23,268391,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
16749,cg25330012,0.0000648,0.00000949,6.832548636,4.42E-11,gain,yes,0.0000162,0.0000161,1.005667534,0.315359852,pos,ns,0.013952363,0.004721042,2.955356532,0.003362542,pos,ns,2.473332283,-0.000206569,0.000162356,-1.27232114,0.204212554,neg,ns,0.555028366,Esrrb,Esrrb_Intron,12,86389021,86389070,86389069,86389070,50,+,GGGTGGGATTTCTTCATCTTATCAATCAGGACTTTAATTAGACACGTCCG,"Intron (Esrrb-204/Esrrb, intron 1 of 6)",12,86361117,86521628,160512,1,Esrrb-204,27904,Esrrb-204,Esrrb,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,19,26380,ENSMUSG00000021255,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10869,cg09438419,0.0000135,0.00000511,2.634135615,0.008858582,gain,ns,-0.00000874,0.00000869,-1.005652987,0.31536684,neg,ns,-0.00329724,0.002545549,-1.2952962,0.196181826,neg,ns,0.707341228,0.000052,0.0000875,0.593665241,0.553168957,pos,ns,0.889669842,Tcf7l2,Tcf7l2_Intergenic_upstream,19,55695217,55695266,55695217,55695218,50,-,CGAGTCAGATCAATCGCCTATTTGACAGCCAACGGTGTGTGGCTTATAAA,Distal Intergenic,19,55741820,55933252,191433,1,Tcf7l2-201,-46603,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,88,21416,ENSMUSG00000024985,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25358,cg05867724,-0.00000147,0.00000194,-0.760972813,0.447251751,loss,ns,0.00000331,0.00000329,1.005647305,0.31536957,pos,ns,0.000298086,0.00096346,0.309391279,0.757231755,pos,ns,0.120771182,-0.0000532,0.0000331,-1.606084381,0.109273485,neg,ns,0.967923606,Ywhag,Ywhag_Exon,5,135911225,135911274,135911273,135911274,50,+,GGATGGGGTGGGTGGGCTGCATGTGCTCTTTGCTGATCTCGTGGGCTTCG,"Exon (Ywhag-205/Ywhag, exon 2 of 3)",5,135908409,135934554,26146,2,Ywhag-205,23280,Ywhag-205;Ywhag-201,Ywhag;Ywhag,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,22628,ENSMUSG00000051391,conserved gene and region,5,135911102,135911345,244,*,244,21,0.631147541,0.867886179,0.086065574,6.37E-15,CpGisland,TRUE,U10,Tr-S
27120,cg14666740,0.0000892,0.0000115,7.754377681,1.29E-13,gain,yes,-0.0000197,0.0000196,-1.005570917,0.315406271,neg,ns,0.011251022,0.005728257,1.964126531,0.050408644,pos,ns,1.297494981,-0.00010178,0.000196994,-0.516664193,0.605758977,neg,ns,0.23609636,Slc32a1,Slc32a1_Exon,2,158614413,158614462,158614461,158614462,50,-,TATGCAGCAGCCCAGCGAGTTCCACTGCATGATGAACTGGACGCACATCG,"Exon (Slc32a1-201/Slc32a1, exon 2 of 2)",2,158610767,158615748,4982,1,Slc32a1-201,3646,Slc32a1-201,Slc32a1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,22348,ENSMUSG00000037771,conserved gene and region,2,158613825,158614993,1169,*,1169,98,0.609923011,0.908054723,0.083832335,2.46E-66,CpGisland,TRUE,U13,Hc-P
17596,cg14241622,0.00000154,0.00000261,0.590781877,0.555097045,gain,ns,0.00000446,0.00000444,1.005545621,0.315418425,pos,ns,0.001521866,0.001300142,1.170538525,0.24268336,pos,ns,0.614960001,0.0000399,0.0000447,0.891809039,0.373186981,pos,ns,0.964163209,Aktip,Aktip_Exon,8,91171139,91171188,91171139,91171140,50,-,CGCAAATAAGCAGAAAGATTTTATTAAACCAAATGAGCAAATCATCTGCG,"Exon (Gm45666-201/Gm45666-201, exon 2 of 2)",8,91125916,91199976,74061,2,Aktip-209,28788,Aktip-209;Aktip-207,Aktip;Aktip,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,6,14339,ENSMUSG00000031667,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19899,cg23783364,0.00000801,0.00000479,1.672450233,0.095444469,gain,ns,-0.00000818,0.00000813,-1.005509629,0.315435719,neg,ns,-0.000825269,0.002382913,-0.346327611,0.729331464,neg,ns,0.13707505,0.000148419,0.0000819,1.811137671,0.071087361,pos,ns,0.803478068,Nkx6-1,Nkx6-1_Intergenic_downstream,5,101603254,101603303,101603254,101603255,50,+,CGCATGACTGACTGGCAATTGTGTGCAATCATTTCAGCTGTCACAGGCCC,Distal Intergenic,5,101658139,101664996,6858,2,Nkx6-1-201,61693,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,10,18096,ENSMUSG00000035187,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17005,cg15346644,-0.00000917,0.00000773,-1.185570517,0.23669992,loss,ns,-0.0000132,0.0000131,-1.005477329,0.315451239,neg,ns,-0.000233298,0.003849304,-0.060607858,0.951710569,neg,ns,0.021495108,0.0000257,0.000132377,0.19451774,0.845897918,pos,ns,0.873557159,Zfp423,Zfp423_Intron,8,87836912,87836961,87836960,87836961,50,-,GACATGTTGACAGATTGCTCAGTGAAGTGTTTAGGTGCATGCACAAGGCG,"Intron (Zfp423-202/Zfp423, intron 3 of 7)",8,87661810,87959595,297786,2,Zfp423-202,122634,Zfp423-202;Zfp423-201;Zfp423-207;Zfp423-205;Zfp423-204,Zfp423;Zfp423;Zfp423;Zfp423;Zfp423,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,42,53,94187,ENSMUSG00000045333,conserved gene and region,8,87836960,87837175,216,*,216,15,0.634259259,0.691421255,0.069444444,1.93E-09,CpGisland,TRUE,U15,NS
6426,cg19869224,-0.000012,0.00000374,-3.207590695,0.001478418,loss,ns,0.00000639,0.00000636,1.005324185,0.315524833,pos,ns,0.000469998,0.001862172,0.252392459,0.800904991,pos,ns,0.096419,-0.0000566,0.000064,-0.883061458,0.37788734,neg,ns,0.919630176,Tmem218,Tmem218_Intergenic_upstream,9,37197148,37197197,37197196,37197197,50,+,AAATATTTTTATTAGCAGCAAATTTGCTGCTTGCTGGAACTAATTTCACG,Distal Intergenic,9,37208223,37224700,16478,1,Tmem218-201,-11026,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,5,66279,ENSMUSG00000032121,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15891,cg07766377,-0.000000495,0.00000323,-0.153313802,0.878250566,loss,ns,0.00000551,0.00000548,1.005222158,0.315573869,pos,ns,0.001502989,0.001606744,0.935424847,0.350297496,pos,ns,0.455562967,0.0000389,0.0000553,0.703821311,0.482072376,pos,ns,0.961805649,Mpped1,Mpped1_Intergenic_upstream,15,83762223,83762272,83762223,83762224,50,+,CGCAATTTACATGTCTTCCCTGTAGGAAATTATAGAATCAGAGCTTTCAA,Distal Intergenic,15,83779467,83792131,12665,1,Mpped1-202,-17195,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,2,223726,ENSMUSG00000041708,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27129,cg21225719,-0.00000696,0.00000244,-2.85651798,0.004572516,loss,ns,0.00000416,0.00000414,1.005210643,0.315579403,pos,ns,-0.001136159,0.001213543,-0.936233076,0.349881962,neg,ns,0.456078447,-0.00000548,0.0000417,-0.131285129,0.895634915,neg,ns,0.950727506,Pappa2,Pappa2_Intergenic_upstream,1,159002689,159002738,159002689,159002690,50,+,CGGGGTCTTCCACAACCAAATTGCTGCTGGTTTATGGACTGAAAAACCTC,Distal Intergenic,1,158958127,158980490,22364,2,Pappa2-203,-22199,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,4,23850,ENSMUSG00000073530,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2113,cg07826075,0.00015004,0.0000264,5.673485806,3.21E-08,gain,yes,-0.0000452,0.0000449,-1.005109017,0.315628252,neg,ns,0.021541299,0.013162351,1.636584483,0.102732081,pos,ns,0.988293916,-0.0000412,0.000452652,-0.091003284,0.927548755,neg,ns,0.516857988,Skida1,Skida1_Promoter,2,18050743,18050792,18050791,18050792,50,+,ATATTTCAGGCTTTAAACGTAACCGAGAGGCAGCAATGAACAATGCCTCG,Promoter (1-2kb),2,18044083,18049051,4969,2,Skida1-202,-1692,Mllt10-201;Skida1-202;Skida1-201;Skida1-203;Skida1-204,Mllt10;Skida1;Skida1;Skida1;Skida1,0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,12,31,72668,ENSMUSG00000054074,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7786,cg13112264,-9.43E-08,0.00000445,-0.021176763,0.983118274,loss,ns,0.0000076,0.00000756,1.005017582,0.315672206,pos,ns,0.001389495,0.002215425,0.627191082,0.530995645,pos,ns,0.274909041,-0.000125784,0.0000762,-1.650966515,0.099758068,neg,ns,0.573020546,Arhgap15,Arhgap15_Intron,2,44305490,44305539,44305538,44305539,50,-,GTGCACAAAGGGATACAGAGCGCTTGACAGGTCTGTGTTAGCAGGGTTCG,"Intron (Arhgap15-203/Arhgap15, intron 12 of 14)",2,43748824,44395953,647130,1,Arhgap15-203,556666,Arhgap15-203;Arhgap15-202;Arhgap15-201,Arhgap15;Arhgap15;Arhgap15,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,72,78,76117,ENSMUSG00000049744,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12570,cg26992531,-0.00000635,0.00000277,-2.288205372,0.022798377,loss,ns,-0.00000473,0.00000471,-1.00488074,0.315737996,neg,ns,-0.000773681,0.001380449,-0.560456006,0.575573252,neg,ns,0.239899397,-0.0000231,0.0000475,-0.487031393,0.62658027,neg,ns,0.973046337,Tjp1,Tjp1_threeUTR,7,65299677,65299726,65299725,65299726,50,-,GGAGTCGGATGATTTTAGAGCAAAAGACCAACCGTCAGGAGTCATGGACG,3' UTR,7,65296165,65371239,75075,2,Tjp1-202,71513,Tjp1-202;Tjp1-201;Tjp1-207;Tjp1-203,Tjp1;Tjp1;Tjp1;Tjp1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,13,21872,ENSMUSG00000030516,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23339,cg13343932,0.0000161,0.0000145,1.112354821,0.266847483,gain,ns,-0.0000247,0.0000246,-1.004870853,0.315742749,neg,ns,-0.005896546,0.007194042,-0.819642965,0.413049393,neg,ns,0.383998012,0.0000988,0.000247403,0.399509495,0.689792933,pos,ns,0.29653117,Socs3,Socs3_Exon,11,117968115,117968164,117968115,117968116,50,+,CGCACTGCGTTCACCACCAGCTGGTACTCGCTCTTGGAGCTGAAGGTCTT,"Exon (Socs3-201/Socs3, exon 2 of 2)",11,117966079,117969186,3108,2,Socs3-201,1022,Socs3-201;Socs3-202;Socs3-203,Socs3;Socs3;Socs3,0;1883;1287,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,9,12702,ENSMUSG00000053113,conserved gene and region,11,117967759,117969258,1500,*,1500,136,0.671333333,0.805559943,0.090666667,1.37E-96,CpGisland,TRUE,U3,Pr-B
4157,cg20744034,-0.0000304,0.00000468,-6.491664479,3.37E-10,loss,yes,0.00000799,0.00000795,1.00467134,0.315838686,pos,ns,-0.001747636,0.002330343,-0.749947828,0.4538549,neg,ns,0.343082971,-0.00011806,0.0000801,-1.473169792,0.14171988,neg,ns,0.93154961,Zfp703,Zfp703_Intergenic_downstream,8,26994042,26994091,26994090,26994091,50,+,CTTTTATCTATTCTGTAGGTACAAATGAAGCTGTCAAATTTGATCAGGCG,Distal Intergenic,8,26978185,26978692,508,1,Zfp703-203,15857,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,11,353310,ENSMUSG00000085795,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20913,cg04586876,0.0000237,0.00001,2.37098196,0.018352049,gain,ns,-0.0000171,0.000017,-1.004506692,0.315917873,neg,ns,0.006264252,0.004976298,1.258817544,0.209043368,pos,ns,0.679763607,-0.000264283,0.000171134,-1.544299556,0.123535971,neg,ns,0.190697929,Pax6,Pax6_Intron,2,105686989,105687038,105687037,105687038,50,+,AGTTGAAGGAGACAGCTGTAGAAATGTTCCACAAGAGACCTCTGGACACG,"Intron (Pax6-206/Pax6, intron 7 of 12)",2,105668900,105697364,28465,1,Pax6-206,18089,Pax6-206;Pax6-207;Pax6-210;Pax6-214;Pax6-208;Pax6-202;Pax6-205;Pax6-225;Pax6-204;Pax6-201;Pax6-203;Pax6-224;Pax6-219;Pax6-221;Pax6-213;Pax6-211;Pax6-222;Pax6-212;Pax6-215;Pax6-223;Pax6-209;Pax6-216,Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,78,18508,ENSMUSG00000027168,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
14119,cg06378297,-0.000000987,0.000000827,-1.192394796,0.234018405,loss,ns,0.00000141,0.00000141,1.00435343,0.315991596,pos,ns,0.00028132,0.000411771,0.683195266,0.49499374,pos,ns,0.305400294,-0.0000121,0.0000142,-0.853214928,0.394198884,neg,ns,0.974287132,Birc6,Birc6_threeUTR,17,74686183,74686232,74686183,74686184,50,-,CGCTGATTGCTTTTACCATGTTGGATCCATTGTCAGTCTCAAAGACCTAC,3' UTR,17,74528295,74703356,175062,1,Birc6-202,157888,Birc6-202;Birc6-204;Birc6-213;Birc6-218;Birc6-220;Birc6-221;Birc6-215,Birc6;Birc6;Birc6;Birc6;Birc6;Birc6;Birc6,0;0;0;0;0;0;15976,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,10,12211,ENSMUSG00000024073,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27928,cg05802169,-0.0000232,0.00000492,-4.71524506,0.00000366,loss,ns,-0.0000084,0.00000836,-1.0042036,0.316063678,neg,ns,-0.001044983,0.002450065,-0.426512311,0.670030605,neg,ns,0.173905359,-0.000163413,0.0000843,-1.939450674,0.053353501,neg,ns,0.867613109,Rps6kc1,Rps6kc1_Intergenic_downstream,1,190654098,190654147,190654146,190654147,50,+,TTGTGTGGCCACCTTGGCACCGAAATGGTTAGAGACCATATCCCTCCACG,Distal Intergenic,1,190808888,190810463,1576,2,Rps6kc1-207,156316,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,14,29,320119,ENSMUSG00000089872,conserved gene and region,1,190654118,190654246,129,*,129,9,0.558139535,0.895833333,0.069767442,0.00000752,CpGisland,TRUE,U15,NS
13512,cg25241242,-0.00000392,0.0000024,-1.637096208,0.10262506,loss,ns,0.00000409,0.00000407,1.004110166,0.316108634,pos,ns,0.000343567,0.001193192,0.287939658,0.773585336,pos,ns,0.111491771,0.0000407,0.000041,0.991798027,0.322069562,pos,ns,0.057925209,Arid4a,Arid4a_fiveUTR,12,71015953,71016002,71015953,71015954,50,-,CGTCATGAGCAGCCAATAGGAGTTCGTGTAGAAGCGAGTCTGCTCAACAG,Promoter (<=1kb),12,71015990,71098592,82603,1,Arid4a-201,0,Arid4a-201;Arid4a-203;Arid4a-202,Arid4a;Arid4a;Arid4a,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,9,238247,ENSMUSG00000048118,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
27323,cg06173875,0.0000638,0.00000732,8.706966159,1.89E-16,gain,yes,-0.0000125,0.0000124,-1.003961817,0.316180021,neg,ns,0.009873512,0.003644497,2.709156065,0.007120486,pos,ns,2.147490377,-0.000327779,0.000125334,-2.615242306,0.009352456,neg,ns,0.043081812,Slc12a5,Slc12a5_Intron,2,164967906,164967955,164967954,164967955,50,-,ACCTAGTTCCCTGCCGTTATTTTTAGGGCGCGGGATGGCACCTGCCCACG,"Intron (Slc12a5-202/Slc12a5, intron 1 of 3)",2,164960816,164974543,13728,1,Slc12a5-202,7090,Slc12a5-202;Slc12a5-209;Slc12a5-207;Slc12a5-201;Slc12a5-208;Slc12a5-210;Slc12a5-206,Slc12a5;Slc12a5;Slc12a5;Slc12a5;Slc12a5;Slc12a5;Slc12a5,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,9,57138,ENSMUSG00000017740,conserved gene and region,2,164967855,164968493,639,*,639,68,0.719874804,0.821958232,0.106416275,9.46E-54,CpGisland,TRUE,U13,Hc-P
17075,cg04590080,-0.00000223,0.000000666,-3.349755728,0.00090874,loss,ns,-0.00000114,0.00000113,-1.00391197,0.316204011,neg,ns,0.000197508,0.000331383,0.596012301,0.551601931,pos,ns,0.258374222,-0.0000164,0.0000114,-1.435540886,0.152141241,neg,ns,0.024665104,Tent4b,Tent4b_fiveUTR,8,88199932,88199981,88199980,88199981,50,+,CAGAGCAGCTCGGACCGTCCAACAGTCTGTGGATGCAGATCTGGGAGACG,Promoter (<=1kb),8,88199213,88259716,60504,1,Tent4b-201,719,Tent4b-201;Tent4b-203;Tent4b-202,Tent4b;Tent4b;Tent4b,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,1,214627,ENSMUSG00000036779,conserved gene but different region,8,88198835,88199981,1147,*,1147,167,0.741063644,1.069025176,0.14559721,2.30E-157,CpGisland,TRUE,U1,Pr-A
1785,cg01754290,-0.00000799,0.00000425,-1.878593359,0.061238317,loss,ns,0.00000725,0.00000722,1.003823518,0.316246582,pos,ns,0.002220222,0.002116349,1.049081196,0.29495793,pos,ns,0.530239923,-0.0000964,0.0000728,-1.324861068,0.186192986,neg,ns,0.92517141,Foxp2,Foxp2_fiveUTR,6,15196917,15196966,15196917,15196918,50,+,CGTGTGTTAATTGATACTTCTTAATCACTTTTAGGTATTAAGTCATGATG,Promoter (<=1kb),6,15196949,15397843,200895,1,Foxp2-214,0,Foxp2-207;Foxp2-213;Foxp2-208;Foxp2-211;Foxp2-217;Foxp2-203;Foxp2-216;Foxp2-205;Foxp2-204;Foxp2-201;Foxp2-210;Foxp2-214;Foxp2-212;Foxp2-209;Foxp2-202,Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,65,114142,ENSMUSG00000029563,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7719,cg16451976,-0.0000013,0.00000219,-0.591847322,0.554384204,loss,ns,0.00000373,0.00000372,1.003789199,0.316263101,pos,ns,0.001932157,0.001089985,1.772645357,0.077269496,pos,ns,1.11199192,-0.0000901,0.0000375,-2.404104299,0.016798696,neg,ns,0.945060499,Arhgap15,Arhgap15_Intron,2,43978749,43978798,43978749,43978750,50,+,CGTCGCTAAATGTATAGAATCAGCTTCTTGCTAAAAACTACAATTACAGG,"Intron (Arhgap15-203/Arhgap15, intron 6 of 14)",2,43748824,44395953,647130,1,Arhgap15-203,229925,Arhgap15-203;Arhgap15-202;Arhgap15-201,Arhgap15;Arhgap15;Arhgap15,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,72,78,76117,ENSMUSG00000049744,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12461,cg12748382,-0.00000432,0.00000405,-1.065761873,0.287360651,loss,ns,-0.0000069,0.00000688,-1.003741192,0.316286209,neg,ns,-0.005371134,0.002015176,-2.665342796,0.008093908,neg,ns,2.091841714,0.000164615,0.0000693,2.375332592,0.018141058,pos,ns,0.906980295,Gm13577,Gm13577_Intergenic_downstream,2,64394920,64394969,64394920,64394921,50,-,CGAGGCTTATTCAGACACTCGCAGATTGGCAAGAGGATAAAAAGTGTCTT,Distal Intergenic,2,64474745,64474949,205,2,Gm13577-201,80029,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,17,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26376,cg16524928,0.0000534,0.00000511,10.44274121,4.51E-22,gain,yes,-0.00000871,0.00000868,-1.003474977,0.316414369,neg,ns,0.006728153,0.002543907,2.644810865,0.00859,pos,ns,2.066006823,-0.000186625,0.0000875,-2.133231914,0.033690762,neg,ns,0.144674795,Nkx2-2,Nkx2-2_fiveUTR,2,147186382,147186431,147186382,147186383,50,+,CGGCTGGTGGCGAGGAAAAAATGGGCCATTGCCCGAGCGATCAGTCCATA,Promoter (<=1kb),2,147183083,147186404,3322,2,Nkx2-2-201,0,Nkx2-2-203;Nkx2-2-201;Nkx2-2-202;Nkx2-2-204,Nkx2-2;Nkx2-2;Nkx2-2;Nkx2-2,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,30,18088,ENSMUSG00000027434,conserved gene and region,2,147186231,147186452,222,*,222,22,0.657657658,0.919254658,0.099099099,5.45E-17,CpGisland,TRUE,U13,Hc-P
17173,cg18760617,0.0000859,0.0000121,7.116904424,7.70E-12,gain,yes,-0.0000206,0.0000205,-1.003183875,0.316554551,neg,ns,0.01412742,0.006008957,2.351060176,0.019345999,pos,ns,1.713408837,-0.000577883,0.000206648,-2.796467323,0.005489148,neg,ns,0.082168076,Sall1,Sall1_fiveUTR,8,89042420,89042469,89042420,89042421,50,-,CGCGACATGCTGGCTCAAACATCAGCTGGGGCAGAATAAAAAATTACTAA,5' UTR,8,89027235,89044162,16928,2,Sall1-201,1693,Sall1-201,Sall1,0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,15,58198,ENSMUSG00000031665,conserved gene but different region,8,89040937,89042423,1487,*,1487,127,0.646940148,0.81667964,0.085406859,8.67E-87,CpGisland,TRUE,U1,Pr-A
21882,cg26020521,0.0000587,0.0000108,5.430682999,0.000000114,gain,yes,-0.0000184,0.0000184,-1.003035255,0.316626135,neg,ns,0.004899577,0.005381377,0.910469104,0.36328255,pos,ns,0.439755462,-0.000173655,0.000185065,-0.938344587,0.348797854,neg,ns,0.176161382,Trim66,Trim66_Intron,7,109494053,109494102,109494053,109494054,50,-,CGTCACAGTCAGTTGCCATAGTGACCAATTGTCCGTCACAAGCAGAGGAT,"Intron (Trim66-201/Trim66, intron 1 of 19)",7,109453776,109508134,54359,2,Trim66-201,14032,Trim66-202;Trim66-201;Trim66-203,Trim66;Trim66;Trim66,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,4,330627,ENSMUSG00000031026,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17116,cg04949150,-0.00000678,0.0000039,-1.73842265,0.083129239,loss,ns,-0.00000665,0.00000663,-1.002978084,0.316653674,neg,ns,-0.002659257,0.001941546,-1.369659615,0.171784479,neg,ns,0.765016079,0.000157726,0.0000668,2.362237102,0.018782684,pos,ns,0.867127905,Msi2,Msi2_Intron,11,88472787,88472836,88472787,88472788,50,-,CGAGGTCATGTTTGCACCAATTTCTCAGGAAGGCTAATGGTGTTTATTTA,"Intron (Msi2-203/Msi2, intron 7 of 13)",11,88339382,88718229,378848,2,Msi2-203,245393,Msi2-203;Msi2-201;Msi2-207,Msi2;Msi2;Msi2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,21,36,76626,ENSMUSG00000069769,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7815,cg13406423,-0.00000867,0.00000245,-3.541683105,0.000458664,loss,ns,-0.00000417,0.00000416,-1.0027502,0.316763464,neg,ns,-0.002119558,0.00121793,-1.740295107,0.082799533,neg,ns,1.081972113,-0.0000366,0.0000419,-0.874429851,0.382561135,neg,ns,0.047444691,Eny2,Eny2_fiveUTR,15,44428131,44428180,44428179,44428180,50,+,GAGCTACTGAGGGTCTAAGTCCGGGCAGCCGAAGAGTGTGGTAGGTAACG,Promoter (<=1kb),15,44428147,44436579,8433,1,Eny2-208,0,Eny2-210;Eny2-203;Eny2-204;Eny2-205;Eny2-201;Eny2-202;Eny2-206;Eny2-208;Eny2-209;Nudcd1-206;Nudcd1-201;Nudcd1-202;Nudcd1-204;Nudcd1-205;Nudcd1-207;Nudcd1-203,Eny2;Eny2;Eny2;Eny2;Eny2;Eny2;Eny2;Eny2;Eny2;Nudcd1;Nudcd1;Nudcd1;Nudcd1;Nudcd1;Nudcd1;Nudcd1,0;0;0;0;0;0;0;0;-4980;-258;0;-346;-243;-272;-323;-277,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,5,223527,ENSMUSG00000022338,conserved gene and region,15,44428086,44428510,425,*,425,38,0.644705882,0.8608742,0.089411765,3.12E-27,CpGisland,TRUE,U1,Pr-A
19503,cg18014986,0.000000148,0.00000481,0.030717338,0.97551473,gain,ns,0.00000819,0.00000816,1.002731922,0.316772271,pos,ns,0.006294283,0.002392018,2.631369146,0.008929404,pos,ns,2.049177545,-0.000232728,0.0000823,-2.829136788,0.004971651,neg,ns,0.91701876,Foxp1,Foxp1_Intron,6,99467586,99467635,99467586,99467587,50,+,CGCCACACAGCTCAGGAATTTTTAAAATGAATTATCACAAGTGATACATA,"Intron (Foxp1-220/Foxp1, intron 1 of 19)",6,98929189,99520997,591809,2,Foxp1-220,53362,Foxp1-220;Foxp1-224;Foxp1-227;Foxp1-216;Gm20696-201;Gm20696-203,Foxp1;Foxp1;Foxp1;Foxp1;Gm20696;Gm20696,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,87,108655,ENSMUSG00000030067,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16847,cg20740396,-0.00000381,0.0000019,-2.001860884,0.046170711,loss,ns,-0.00000324,0.00000323,-1.002659645,0.316807099,neg,ns,-0.000413103,0.000946811,-0.436310549,0.662915134,neg,ns,0.178542066,-0.00000585,0.0000326,-0.179635475,0.857556112,neg,ns,0.04749329,Cltc,Cltc_fiveUTR,11,86757243,86757292,86757243,86757244,50,-,CGCACCTGGAGATGCTCCTGAAAACGAATTGGCAGAATCTGGGCCATGGC,Promoter (<=1kb),11,86694351,86757565,63215,2,Cltc-202,273,Cltc-202;Cltc-201,Cltc;Cltc,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,10,67300,ENSMUSG00000047126,conserved gene but different region,11,86757142,86757299,158,*,158,11,0.620253165,0.788208617,0.069620253,0.000000471,CpGisland,TRUE,U1,Pr-A
22821,cg04580151,-0.00000305,0.00000397,-0.767973447,0.443087544,loss,ns,0.00000677,0.00000675,1.00239701,0.316933673,pos,ns,-0.005728905,0.001978016,-2.896288943,0.004044579,neg,ns,2.393126694,0.000237462,0.000068,3.490865269,0.00055133,pos,ns,0.878790667,Faah,Faah_Intron,4,115977672,115977721,115977672,115977673,50,+,CGGACCAAGGGGAAATGAAGAAGCCCCAATAAATCACCATGAAGCCACCA,"Intron (Faah-202/Faah, intron 13 of 14)",4,115967145,116017675,50531,2,Faah-202,39954,Faah-202,Faah,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,20,14073,ENSMUSG00000034171,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
23665,cg24323464,-0.00000173,0.00000117,-1.47462112,0.141329255,loss,ns,-0.000002,0.00000199,-1.002381291,0.31694125,neg,ns,0.000517033,0.000583549,0.886013737,0.376296903,pos,ns,0.424469356,-0.0000315,0.0000201,-1.569856401,0.117468628,neg,ns,0.971696962,Hmgcs1,Hmgcs1_Exon,13,119701192,119701241,119701192,119701193,50,-,CGCTGCTATTCTGTCTACTGCAAAAAGATCCATGCCCAGTGGCAGAAAGG,"Exon (Hmgcs1-201/Hmgcs1, exon 4 of 10)",13,119690446,119708082,17637,1,Hmgcs1-201,10746,Hmgcs1-203;Hmgcs1-201;Hmgcs1-204;Hmgcs1-202,Hmgcs1;Hmgcs1;Hmgcs1;Hmgcs1,10813;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,208715,ENSMUSG00000093930,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26165,cg03471753,0.00000833,0.0000038,2.19528853,0.028883934,gain,ns,-0.00000646,0.00000645,-1.002284606,0.316987855,neg,ns,-0.001142503,0.001889144,-0.604772818,0.545772361,neg,ns,0.262988461,-0.00000442,0.000065,-0.06796873,0.945854344,neg,ns,0.494947432,Sox5,Sox5_Exon,6,144203914,144203963,144203914,144203915,50,+,CGACATTGTTTATGCTAATTATCTTTGTTTATGCCACAATTCTGTTTGTT,"Exon (Sox5-207/Sox5, exon 1 of 9)",6,143828425,144209480,381056,2,Sox5-201,5517,Sox5-201;Sox5-214;Sox5-205;Sox5-202;Sox5-209;Sox5-207;Sox5-210;Sox5-212;Sox5-208;Sox5-213,Sox5;Sox5;Sox5;Sox5;Sox5;Sox5;Sox5;Sox5;Sox5;Sox5,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,71,20678,ENSMUSG00000041540,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2971,cg04681538,0.0000163,0.00000503,3.229843543,0.001371509,gain,ns,-0.00000857,0.00000855,-1.002186225,0.317035283,neg,ns,-0.001808712,0.002504827,-0.722090636,0.470783084,neg,ns,0.32717915,0.000188065,0.0000861,2.183230062,0.029768578,pos,ns,0.731220379,Lrmda,Lrmda_Intron,14,22198634,22198683,22198634,22198635,50,+,CGAGTGCGAATTGGGATGAGTTGGGCAAAAGTGACAGTTTAAAAATAACG,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,178922,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206,Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22923,cg05098623,0.0000356,0.00000266,13.40515271,1.24E-32,gain,yes,0.00000452,0.00000451,1.002102619,0.317075591,pos,ns,0.004205884,0.001321787,3.181968662,0.001611047,pos,ns,2.792891705,-0.000150706,0.0000455,-3.315405219,0.001023719,neg,ns,0.038749919,Gm49337,Gm49337_Exon,4,116222337,116222386,116222337,116222338,50,+,CGATGACGCAGACTGGAGGGAGGTGATGATGCCCTATTCGACAGAACTGA,"Exon (Pik3r3-203/Pik3r3, exon 2 of 4)",4,116173384,116299841,126458,1,Gm49337-201,48953,Gm49337-201;Pik3r3-203;Pik3r3-201;Pik3r3-202,Gm49337;Pik3r3;Pik3r3;Pik3r3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,,NA,mapped to different genes,4,116222284,116222376,93,*,93,9,0.59139785,1.137228261,0.096774194,0.000000492,CpGisland,TRUE,NA,NRS
23753,cg01193554,0.00000411,0.00000388,1.058725343,0.290549132,gain,ns,0.00000661,0.0000066,1.002085694,0.317083752,pos,ns,0.003274816,0.00193261,1.69450387,0.091173857,pos,ns,1.040129672,-0.000115808,0.0000665,-1.742467376,0.08241837,neg,ns,0.052138939,Foxo6,Foxo6_Intron,4,120269792,120269841,120269792,120269793,50,-,CGTGTCTTTAAAATGCAACTGCAGGTAGAGAAGACTGTTAACCCTTTGCT,"Intron (Foxo6-201/Foxo6, intron 1 of 1)",4,120267079,120287349,20271,2,Foxo6-201,17508,Foxo6-201,Foxo6,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,14,42,329934,ENSMUSG00000052135,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
9269,cg19314546,-0.00000331,0.00000164,-2.017589555,0.044495413,loss,ns,0.00000279,0.00000278,1.001741733,0.317249622,pos,ns,0.0000706,0.000815604,0.086546871,0.931087572,pos,ns,0.03100947,-0.0000211,0.000028,-0.753958272,0.45144657,neg,ns,0.958364769,Foxp4,Foxp4_Intron,17,47872567,47872616,47872567,47872568,50,-,CGATCCTCCGCTTTGCAAATGAGAATGACCCCAATTTCCGAGGATGGCCT,"Intron (Foxp4-204/Foxp4, intron 13 of 16)",17,47867133,47924645,57513,2,Foxp4-204,52029,Foxp4-204;Foxp4-203;Foxp4-201;Foxp4-202,Foxp4;Foxp4;Foxp4;Foxp4,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,25,74123,ENSMUSG00000023991,conserved gene and region,17,47872440,47872721,282,*,282,26,0.563829787,1.163809524,0.092198582,3.73E-19,CpGisland,TRUE,U10,Tr-S
14964,cg07134200,0.00000578,0.00000497,1.161529656,0.246320121,gain,ns,-0.00000846,0.00000845,-1.001685561,0.317276716,neg,ns,-0.007985002,0.002474788,-3.226540297,0.001386913,neg,ns,2.857950925,0.000160374,0.0000851,1.88435897,0.060451931,pos,ns,0.884421895,Supt6,Supt6_Exon,11,78211809,78211858,78211809,78211810,50,+,CGGGGCTGGTATCCCAGTAGGAACTTGCCGGGCAGTTCCTTGCAGGCACA,"Exon (Supt6-201/Supt6, exon 32 of 37)",11,78206746,78245987,39242,2,Supt6-201,34129,Supt6-201;Supt6-202,Supt6;Supt6,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,7,20926,ENSMUSG00000002052,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3441,cg07718342,-0.00000156,0.000000845,-1.850011582,0.06526337,loss,ns,-0.00000144,0.00000144,-1.001657839,0.317290088,neg,ns,-0.000209896,0.000420657,-0.49897169,0.618153216,neg,ns,0.208903867,-0.0000139,0.0000145,-0.959027445,0.338292283,neg,ns,0.03057472,Bcl11a,Bcl11a_Intron,11,24079660,24079709,24079708,24079709,50,-,TGGATTTTGATTGGGAAAAATCTCGTGTCTGAATGTTTACAAGCACCGCG,"Intron (Bcl11a-201/Bcl11a, intron 1 of 4)",11,24078056,24173194,95139,1,Bcl11a-201,1604,A830031A19Rik-201;Bcl11a-201;Bcl11a-203;Bcl11a-205;Bcl11a-202;Bcl11a-204,A830031A19Rik;Bcl11a;Bcl11a;Bcl11a;Bcl11a;Bcl11a,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,98,14025,ENSMUSG00000000861,conserved gene and region,11,24079683,24079984,302,*,302,31,0.682119205,0.896743295,0.102649007,2.90E-24,CpGisland,TRUE,U1,Pr-A
6402,cg18338863,0.000000584,0.000000627,0.931573899,0.352281702,gain,ns,-0.00000107,0.00000107,-1.001643101,0.317297197,neg,ns,-0.000153426,0.000312056,-0.491661642,0.623306499,neg,ns,0.205298345,-0.00000972,0.0000107,-0.905804212,0.365742964,neg,ns,0.014462786,Marcks,Marcks_fiveUTR,10,37138906,37138955,37138954,37138955,50,-,CGGGGTCCAACGCCCAAGTGCACAGATGAATGGGCTCGCGGGCGCTGACG,Promoter (<=1kb),10,37133375,37138920,5546,2,Marcks-201,0,Marcks-201,Marcks,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,8,17118,ENSMUSG00000069662,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23955,cg02583104,0.0000147,0.00000907,1.62190221,0.105840853,gain,ns,-0.0000154,0.0000154,-1.00152723,0.317353093,neg,ns,0.019207415,0.004513264,4.255770632,0.0000276,pos,ns,4.558558355,-0.000722218,0.000155211,-4.653142622,0.00000485,neg,ns,0.350998826,Iqsec3,Iqsec3_threeUTR,6,121376505,121376554,121376505,121376506,50,+,CGTTTGAAGCCTGTTGTGAATTGACACCTAGTTTAGAAACAGCCAGAGAA,3' UTR,6,121372933,121473623,100691,2,Iqsec3-202,97069,Iqsec3-202;Iqsec3-204;Iqsec3-201,Iqsec3;Iqsec3;Iqsec3,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,3,243621,ENSMUSG00000040797,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1221,cg11180943,0.0000973,0.0000133,7.295773598,2.50E-12,gain,yes,0.0000227,0.0000227,1.001510502,0.317361163,pos,ns,0.017853084,0.006640269,2.688608509,0.00756303,pos,ns,2.1213042,-0.000230548,0.000228358,-1.009588801,0.313479696,neg,ns,0.599278616,Bcor,Bcor_Intron,X,12070050,12070099,12070098,12070099,50,+,TTGAACATTTCCATAATCGTCATTATTAGTGCAAATTACACGCCTAATCG,"Intron (Bcor-202/Bcor, intron 1 of 14)",20,12036740,12080553,43814,2,Bcor-202,10454,Bcor-202;Bcor-203;Bcor-204;Bcor-206;Bcor-201;Bcor-207;Bcor-205,Bcor;Bcor;Bcor;Bcor;Bcor;Bcor;Bcor,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,56,74,71458,ENSMUSG00000040363,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4046,cg03360294,-0.0000559,0.00000853,-6.553094053,2.35E-10,loss,yes,0.0000145,0.0000145,1.001409853,0.317409722,pos,ns,0.010950602,0.004245026,2.579631243,0.010350889,pos,ns,1.985022332,-0.00057546,0.000145986,-3.941881935,0.0001,neg,ns,0.832515691,Gm45647,Gm45647_Intergenic_upstream,8,26656763,26656812,26656763,26656764,50,+,CGGATGGTTAATTTATTCTTTATAGCACAGTCATTGATGGCTGTTAAATC,Distal Intergenic,8,26780315,26780509,195,1,Gm45647-201,-123503,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,46,62,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12385,cg00515235,0.0000445,0.00000513,8.657174876,2.69E-16,gain,yes,0.00000874,0.00000872,1.001399386,0.317414772,pos,ns,0.007809446,0.002555551,3.055875073,0.002439145,pos,ns,2.612762379,-0.000207567,0.0000879,-2.361791506,0.018804863,neg,ns,0.069502813,Ctnna3,Ctnna3_Exon,10,64087920,64087969,64087920,64087921,50,+,CGTGTTGGTGGGTTTATAATCTACATAAAATTCCTGGGTGCTGGGAGTCA,"Exon (Lrrtm3-201/Lrrtm3, exon 2 of 3)",10,63430098,65002965,1572868,1,Ctnna3-203,657822,Ctnna3-203;Ctnna3-202;Ctnna3-201;Lrrtm3-201;Lrrtm3-202;Lrrtm3-204;Lrrtm3-203,Ctnna3;Ctnna3;Ctnna3;Lrrtm3;Lrrtm3;Lrrtm3;Lrrtm3,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,11,216033,ENSMUSG00000060843,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18803,cg09151214,0.00000376,0.00000451,0.833325011,0.405303045,gain,ns,0.00000767,0.00000766,1.001368204,0.317429817,pos,ns,-0.00180751,0.00224317,-0.8057839,0.420985117,neg,ns,0.375733258,0.0000474,0.0000771,0.614294858,0.539471064,pos,ns,0.886118837,Arhgap23,Arhgap23_Exon,11,97464798,97464847,97464846,97464847,50,+,CCCGGCTGTGCCAACCAAGCTCTGATCAGCAAGAAGCTTAACGATTATCG,"Exon (Arhgap23-203/Arhgap23, exon 13 of 24)",11,97415533,97502402,86870,1,Arhgap23-203,49265,Arhgap23-203;Arhgap23-202;Arhgap23-204,Arhgap23;Arhgap23;Arhgap23,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,8,58996,ENSMUSG00000049807,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8084,cg11179893,0.0000241,0.00000307,7.829259749,7.84E-14,gain,yes,-0.00000523,0.00000522,-1.00135983,0.317433857,neg,ns,0.001397839,0.001530008,0.913615377,0.361628996,pos,ns,0.441736755,0.0000834,0.0000526,1.584232776,0.114160333,pos,ns,0.054762341,Pax2,Pax2_Intergenic_upstream,19,44726579,44726628,44726579,44726580,50,+,CGGCAGAGCGTGGTAAAGCTATAAAATTCAACATTAAAACCTTCCACAGC,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-29417,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2222,cg13984351,-0.00000308,0.00000141,-2.189286556,0.029321372,loss,ns,0.00000239,0.00000239,1.001244421,0.317489546,pos,ns,0.000545061,0.000700065,0.77858634,0.436817312,pos,ns,0.359700158,0.0000108,0.0000241,0.447935083,0.654512923,pos,ns,0.04114128,Bmi1,Bmi1_Promoter,2,18676748,18676797,18676748,18676749,50,+,CGGGCCTGACTACACCGACACTAATTCCCAGGCCGCCCTTAAGGAATGAG,Promoter (<=1kb),2,18677018,18686629,9612,1,Bmi1-201,-221,Bmi1-201;Bmi1-203;Bmi1-206;Bmi1-202;Bmi1-207;Bmi1-204;Bmi1-205;Commd3-212;Commd3-201;Commd3-210;Commd3-205;Commd3-211;Commd3-206;Commd3-203;Commd3-204;Commd3-207;Commd3-202;Commd3-208;Commd3-209,Bmi1;Bmi1;Bmi1;Bmi1;Bmi1;Bmi1;Bmi1;Commd3;Commd3;Commd3;Commd3;Commd3;Commd3;Commd3;Commd3;Commd3;Commd3;Commd3;Commd3,0;-483;-1010;0;-3577;-4197;-4310;4364;4325;4315;4313;4312;4225;3090;2787;2663;2401;2324;2099,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,6,12151,ENSMUSG00000026739,conserved gene but different region,2,18676145,18676890,746,*,746,96,0.719839142,1.004713805,0.128686327,1.37E-84,CpGisland,TRUE,U1,Pr-A
8002,cg05796422,0.0000528,0.00000789,6.694815807,1.01E-10,gain,yes,0.0000134,0.0000134,1.001111782,0.317553557,pos,ns,0.00912675,0.003927362,2.323888005,0.020777748,pos,ns,1.682401518,-0.000216056,0.000135062,-1.599683265,0.11068749,neg,ns,0.163163545,Pax2,Pax2_Intergenic_upstream,19,44676797,44676846,44676845,44676846,50,-,CCATGCGTTGACTCAATTAAATCCAGCCTGCTTTTGTTGGCAGGCCTCCG,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-79248,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
12844,cg09746525,-0.000032,0.0000114,-2.798665714,0.005452848,loss,ns,-0.0000195,0.0000195,-1.001035135,0.31759055,neg,ns,-0.012811459,0.005698363,-2.248270265,0.025261326,neg,ns,1.597543856,0.0000963,0.000195966,0.491238674,0.623605246,pos,ns,0.707541427,Ebf2,Ebf2_Intron,14,67291359,67291408,67291407,67291408,50,-,GACATATTTCCGTTCTGCCTGGGAAGAATACACAGAAGAGCTGAAAGACG,"Intron (Ebf2-201/Ebf2, intron 7 of 16)",14,67233292,67429777,196486,1,Ebf2-201,58067,Ebf2-201;Ebf2-203;Ebf2-202,Ebf2;Ebf2;Ebf2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,21,13592,ENSMUSG00000022053,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2072,cg22504313,-0.00000173,0.00000292,-0.593594932,0.553215933,loss,ns,-0.00000496,0.00000495,-1.000973927,0.317620094,neg,ns,-0.002564777,0.001450958,-1.767643467,0.078104225,neg,ns,1.107325475,0.0000737,0.0000499,1.477611739,0.140526951,pos,ns,0.487811282,Mmp16,Mmp16_fiveUTR,4,17853714,17853763,17853762,17853763,50,-,GTTCACTATGATCTTACTCACATTCAGCACTGGAAGACGGTTGGATTTCG,Promoter (<=1kb),4,17852893,18117457,264565,1,Mmp16-206,821,Mmp16-206;Mmp16-204;Mmp16-201;Mmp16-202,Mmp16;Mmp16;Mmp16;Mmp16,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,6,17389,ENSMUSG00000028226,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22505,cg05052519,-0.0000021,0.0000018,-1.168908706,0.24333847,loss,ns,0.00000306,0.00000306,1.000958374,0.317627601,pos,ns,0.000186382,0.000895765,0.208069795,0.835311103,pos,ns,0.078151746,0.0000286,0.0000308,0.929606983,0.353297911,pos,ns,0.954286485,Rps4l-ps,Rps4l-ps_Intergenic_downstream,7,114896958,114897007,114897006,114897007,50,+,AGTCTGTAAATGAACAGTTGCTCTGAAAAATCAAGCCCTCACAGTTCTCG,Distal Intergenic,7,114926959,114927726,768,2,Rps4l-ps-201,30719,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,13,19,627967,NA,mapped to different genes,7,114896968,114897083,116,*,116,9,0.50862069,1.202764977,0.077586207,0.00000318,CpGisland,TRUE,U15,NS
4552,cg20305372,-0.0000658,0.000012,-5.49767887,8.05E-08,loss,yes,0.0000204,0.0000203,1.000712142,0.317746471,pos,ns,0.001853656,0.005958453,0.311096937,0.755936018,pos,ns,0.121514962,-0.000434903,0.000204911,-2.122400512,0.034596677,neg,ns,0.745837811,Ntm,Ntm_Intron,9,29700074,29700123,29700122,29700123,50,+,AGAATAAGCCGTCTGCAGTATAGTTAACTTTCAATTTCAGCCAATTTTCG,"Intron (Ntm-201/Ntm, intron 1 of 7)",9,28994750,29963129,968380,2,Ntm-201,263006,Ntm-201;Ntm-204;Ntm-210;Ntm-207,Ntm;Ntm;Ntm;Ntm,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,27,32,235106,ENSMUSG00000059974,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23974,cg24894712,-0.0000253,0.00000461,-5.487372637,8.49E-08,loss,yes,0.00000784,0.00000784,1.000579915,0.317810317,pos,ns,-0.003806684,0.002296698,-1.65745937,0.098438233,neg,ns,1.006836189,0.0000278,0.000079,0.351973265,0.725097454,pos,ns,0.896538318,Frmd5,Frmd5_Intron,2,121558579,121558628,121558579,121558580,50,+,CGTGGGACAGACACAAATCAGAAGAAGTGACATGGTTACTGTACATGGCA,"Intron (Frmd5-206/Frmd5, intron 6 of 12)",2,121545529,121586433,40905,2,Frmd5-206,27805,Frmd5-206;Frmd5-202;Frmd5-207;Frmd5-205;Frmd5-203;Frmd5-212;Frmd5-204;Frmd5-201;Frmd5-211;Frmd5-208,Frmd5;Frmd5;Frmd5;Frmd5;Frmd5;Frmd5;Frmd5;Frmd5;Frmd5;Frmd5,0;0;0;0;0;0;0;0;-22;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,4,228564,ENSMUSG00000027238,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10986,cg07766478,-0.0000257,0.00000806,-3.187281671,0.001582673,loss,ns,-0.0000137,0.0000137,-1.000507712,0.317845184,neg,ns,-0.006352086,0.004013166,-1.58281155,0.114484067,neg,ns,0.94125495,-0.0000387,0.000138012,-0.280748414,0.779090648,neg,ns,0.893950233,Pcnp,Pcnp_fiveUTR,16,56024401,56024450,56024449,56024450,50,+,CTTAGTTTTCACAGGTTTTTCTGCTTCTTCTTCAGGTCCTGGTGAAGTCG,Promoter (<=1kb),16,56007245,56024628,17384,2,Pcnp-203,178,Pcnp-203;Pcnp-205;Pcnp-202;Pcnp-207;Pcnp-206;Pcnp-208;Pcnp-201;Pcnp-204,Pcnp;Pcnp;Pcnp;Pcnp;Pcnp;Pcnp;Pcnp;Pcnp,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,TRUE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,1,76302,ENSMUSG00000071533,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4100,cg19561086,0.00000126,0.0000105,0.119725035,0.90477852,gain,ns,0.0000178,0.0000178,1.00042205,0.317886553,pos,ns,-0.001081076,0.005219074,-0.207139506,0.836036906,neg,ns,0.07777455,-0.000178738,0.000179484,-0.995843991,0.320102627,neg,ns,0.784868054,Gm12070,Gm12070_Intergenic_downstream,11,26802756,26802805,26802756,26802757,50,-,CGAGTGAATACTGCCAATAAAGCAATTGAAGATAACACTAATTGCTTATT,Distal Intergenic,11,26786633,26787634,1002,1,Gm12070-201,16172,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,8,654472,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23324,cg09286194,0.00000385,0.00000974,0.394989971,0.693121928,gain,ns,-0.0000166,0.0000165,-1.00020393,0.317991908,neg,ns,-0.00406513,0.004848256,-0.838472652,0.402411345,neg,ns,0.395329784,0.00000135,0.000166731,0.008095673,0.993545865,pos,ns,0.832011988,Cdca7l,Cdca7l_Intron,12,117806512,117806561,117806512,117806513,50,-,CGTGACTTAAAACAATTGGTATCTTGGGCTGCATTCAACACCAGATTGGT,"Intron (Cdca7l-202/Cdca7l, intron 1 of 4)",12,117804289,117870047,65759,1,Cdca7l-202,2223,Cdca7l-202,Cdca7l,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,7,217946,ENSMUSG00000021175,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23897,cg15569409,0.00001,0.00000469,2.137864075,0.033309605,gain,ns,-0.00000797,0.00000797,-1.00000121,0.318089844,neg,ns,-0.00443287,0.002335022,-1.89842756,0.058568324,neg,ns,1.232337207,0.000144396,0.0000803,1.798182487,0.073120913,pos,ns,0.882136475,Csnk1d,Csnk1d_threeUTR,11,120963860,120963909,120963860,120963861,50,-,CGGTGCACGACAGACTGAAGACCACTGGAAGCCACCCGACCAGGAATCTG,3' UTR,11,120958990,120991330,32341,2,Csnk1d-209,27421,Csnk1d-209;Csnk1d-202;Csnk1d-201;Csnk1d-203;Csnk1d-205;Csnk1d-204;Slc16a3-202;Slc16a3-208,Csnk1d;Csnk1d;Csnk1d;Csnk1d;Csnk1d;Csnk1d;Slc16a3;Slc16a3,0;0;0;0;0;4152;14793;14779,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,5,104318,ENSMUSG00000025162,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19780,cg19921966,-0.00000085,0.000000772,-1.101208207,0.271660344,loss,ns,0.00000131,0.00000131,0.99984137,0.318167079,pos,ns,0.000511482,0.000384338,1.330812987,0.184228553,pos,ns,0.734643058,-0.0000202,0.0000132,-1.525869667,0.128061896,neg,ns,0.017581093,Msl2,Msl2_fiveUTR,9,101075233,101075282,101075233,101075234,50,+,CGGAATTTCTTTTCAACCGGGAGCCATTGGTGTCGAAGTGTCTGCAATGA,5' UTR,9,101074101,101101785,27685,1,Msl2-202,1132,Msl2-202;Msl2-201,Msl2;Msl2,0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,19,77853,ENSMUSG00000066415,conserved gene and region,9,101075182,101075428,247,*,247,16,0.514170041,0.987506247,0.064777328,1.37E-09,CpGisland,TRUE,U1,Pr-A
23777,cg16453451,-0.0000447,0.0000186,-2.409604445,0.0165523,loss,ns,-0.0000315,0.0000315,-0.999754005,0.318209299,neg,ns,-0.009821939,0.009236813,-1.063347092,0.288452183,neg,ns,0.539926171,0.000384629,0.000317653,1.210846223,0.226876661,pos,ns,0.436050382,Foxo6,Foxo6_Intergenic_upstream,4,120333005,120333054,120333053,120333054,50,+,GTTTTCATTATTGCCCTAATACTATCTATTAACATACTGGAGGGAGCTCG,Distal Intergenic,4,120267079,120287349,20271,2,Foxo6-201,-45656,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,9,42,329934,ENSMUSG00000052135,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22701,cg22450471,0.00000528,0.0000022,2.396044806,0.017165588,gain,ns,-0.00000374,0.00000374,-0.999742591,0.318214815,neg,ns,-0.000445192,0.001095881,-0.406241528,0.684845431,neg,ns,0.164407437,-0.0000103,0.0000377,-0.273903035,0.784341552,neg,ns,0.949941352,Sox6,Sox6_Intron,7,115747666,115747715,115747714,115747715,50,-,CATATGTCCAAGCCTGCGGTGCTGGGACTGAGCATGATTATACCCCGACG,"Intron (Sox6-210/Sox6, intron 4 of 15)",7,115470872,116031047,560176,2,Sox6-210,283332,Sox6-210;Sox6-201;Sox6-202;Sox6-204;Sox6-205;Sox6-203;Sox6-212;Sox6-206;Sox6-209;Sox6-214,Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,37,57,20679,ENSMUSG00000051910,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9366,cg17749256,-0.00000356,0.00000361,-0.988223112,0.323814079,loss,ns,-0.00000613,0.00000613,-0.999710499,0.318230325,neg,ns,-0.003982664,0.001795139,-2.218582965,0.027239234,neg,ns,1.564805105,0.0000452,0.0000617,0.732667271,0.464314999,pos,ns,0.957455899,Tenm3,Tenm3_fiveUTR,8,48417055,48417104,48417103,48417104,50,-,CTGGACGGACTCGGGTGTGGTTTGCAGCTCGGCGGGCAAAGCAGCCGGCG,5' UTR,8,48227682,48674690,447009,2,Tenm3-201,257586,Tenm3-201;Tenm3-206;Tenm3-204;Tenm3-208;Tenm3-203;Tenm3-202,Tenm3;Tenm3;Tenm3;Tenm3;Tenm3;Tenm3,0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,7,39,23965,ENSMUSG00000031561,conserved gene but different region,8,48417060,48417110,51,*,51,7,0.745098039,1.0625,0.137254902,0.00000149,CpGisland,TRUE,U15,NS
11532,cg06201888,-0.00002,0.00000545,-3.666904953,0.00028881,loss,ns,-0.00000925,0.00000925,-0.999629397,0.318269523,neg,ns,-0.012818687,0.002711104,-4.728216688,0.00000344,neg,ns,5.463006461,0.000198821,0.0000932,2.132481123,0.033752892,pos,ns,0.88644811,Shtn1,Shtn1_Intron,19,59043776,59043825,59043776,59043777,50,-,CGGCTTGGCAGGGGCCCCCCTCACTAAATGACACGTTAAGCGTAATTACT,"Intron (Shtn1-202/Shtn1, intron 3 of 14)",19,58973356,59076069,102714,2,Shtn1-202,32244,Shtn1-202;Shtn1-201,Shtn1;Shtn1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,10,71653,ENSMUSG00000041362,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5986,cg10950442,0.0000368,0.00000423,8.715049615,1.79E-16,gain,yes,-0.00000718,0.00000718,-0.999380689,0.318389749,neg,ns,0.000706504,0.002104283,0.335745541,0.737289875,pos,ns,0.13236173,-0.0000502,0.0000724,-0.693820507,0.488314343,neg,ns,0.882035899,Dab2ip,Dab2ip_threeUTR,2,35719821,35719870,35719869,35719870,50,-,TTCTTTCCCTGTGTGTGCTTGTCTCCCTGCAGTCTGATAGATTTCACCCG,3' UTR,2,35558266,35730994,172729,1,Dab2ip-205,161555,Dab2ip-205;Dab2ip-206;Dab2ip-209;Dab2ip-211;Dab2ip-202;Dab2ip-207;Dab2ip-203;Dab2ip-201;Dab2ip-208;Dab2ip-204;Dab2ip-213,Dab2ip;Dab2ip;Dab2ip;Dab2ip;Dab2ip;Dab2ip;Dab2ip;Dab2ip;Dab2ip;Dab2ip;Dab2ip,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,9,12,69601,ENSMUSG00000026883,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21901,cg26879836,0.0000219,0.0000108,2.023529937,0.043876239,gain,ns,0.0000184,0.0000184,0.999351964,0.318403637,pos,ns,0.005614592,0.005383858,1.042856725,0.297827226,pos,ns,0.526035603,-0.00014657,0.00018515,-0.791628519,0.429182608,neg,ns,0.255666857,Bdnf,Bdnf_fiveUTR,2,109675186,109675235,109675234,109675235,50,-,TTAGATTCATAAGTCACACCAAGTGGTGGGCGATCCACTGAGCAAAGCCG,Promoter (<=1kb),2,109674700,109727007,52308,1,Bdnf-201,486,Bdnf-201;Bdnf-207;Bdnf-208;Bdnf-210;Bdnf-206,Bdnf;Bdnf;Bdnf;Bdnf;Bdnf,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,8,18,12064,ENSMUSG00000048482,conserved gene and region,2,109674953,109675235,283,*,283,14,0.462897527,0.943333333,0.049469965,0.000000519,CpGisland,TRUE,U13,Hc-P
17069,cg20653333,0.000197069,0.0000181,10.86247838,1.66E-23,gain,yes,-0.0000308,0.0000308,-0.999280063,0.3184384,neg,ns,0.027432812,0.009029526,3.038123116,0.002583036,pos,ns,2.587869535,-0.000539625,0.000310525,-1.737784513,0.083241848,neg,ns,0.318109592,Gata2,Gata2_Promoter,6,88190825,88190874,88190825,88190826,50,+,CGGCACTTTGGAAACAATTCCCAGCCCTGTACAACCCCATTCTCGGGCAG,Promoter (3-4kb),6,88193891,88207032,13142,1,Gata2-202,-3017,Gata2-202,Gata2,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,7,12,14461,ENSMUSG00000015053,mapped to different genes,6,88190415,88190826,412,*,412,35,0.609223301,0.933695934,0.084951456,2.50E-24,CpGisland,TRUE,U13,Hc-P
14261,cg18457037,-0.00000235,0.00000214,-1.101634806,0.271475055,loss,ns,0.00000363,0.00000363,0.999208862,0.318472828,pos,ns,0.003440725,0.001063191,3.236223683,0.001342206,pos,ns,2.872180941,-0.000126072,0.0000366,-3.448076204,0.00064266,neg,ns,0.940069759,Fam214a,Fam214a_Exon,9,75007023,75007072,75007071,75007072,50,-,TTTTCTCAGTTAAGTGCATGGCTGAGTGTTTCTCATGGTGCTATTCCACG,"Exon (Fam214a-205/Fam214a, exon 5 of 13)",9,74952964,75032448,79485,1,Fam214a-205,54059,Fam214a-205;Fam214a-203;Fam214a-202;Fam214a-201,Fam214a;Fam214a;Fam214a;Fam214a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,235493,ENSMUSG00000034858,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20689,cg25600606,-0.00000913,0.00000501,-1.823892118,0.06913106,loss,ns,0.0000085,0.00000851,0.999149421,0.318501571,pos,ns,0.005494527,0.002491876,2.204975543,0.02818983,pos,ns,1.549907545,-0.000115361,0.0000857,-1.346174785,0.179229702,neg,ns,0.880461833,Hipk3,Hipk3_Exon,2,104471460,104471509,104471460,104471461,50,+,CGCTTCAATCCACATCGCTGGGGGCCTTCTAGGAAATGCAATCTGTTTCG,"Exon (Hipk3-201/Hipk3, exon 2 of 16)",2,104426481,104494446,67966,2,Hipk3-201,22937,Hipk3-201;Hipk3-202;Hipk3-203,Hipk3;Hipk3;Hipk3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,15259,ENSMUSG00000027177,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2285,cg25097089,-0.0000163,0.00000248,-6.569226524,2.14E-10,loss,yes,-0.00000421,0.00000421,-0.999054986,0.318547239,neg,ns,-0.00143914,0.001233462,-1.166748454,0.244208712,neg,ns,0.612238848,-0.0000435,0.0000424,-1.026133529,0.305628664,neg,ns,0.952209492,Meis1,Meis1_Exon,11,18941760,18941809,18941760,18941761,50,-,CGTCACCTGTGCTGGGGGAAGCTACACTGTTGTCCAAGCCATCACCTGCA,"Exon (Meis1-206/Meis1, exon 8 of 10)",11,18879817,19018985,139169,2,Meis1-206,77176,Meis1-206;Meis1-202;Meis1-209;Meis1-201;Meis1-203;Meis1-208;Meis1-207,Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,21,88,17268,ENSMUSG00000020160,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
285,cg12546877,-0.00000281,0.00000151,-1.86229011,0.063508145,loss,ns,0.00000256,0.00000256,0.998933351,0.318606068,pos,ns,0.002216119,0.000749966,2.954958375,0.003366764,pos,ns,2.472787356,-0.0000511,0.0000258,-1.980705747,0.048507909,neg,ns,0.045923365,Arid1b,Arid1b_fiveUTR,17,4996449,4996498,4996449,4996450,50,-,CGATGAGCCCCGGCACCCCCGGACCGACCATGGGCAGATCCCAGGTAACC,5' UTR,17,4994332,5097733,103402,1,Arid1b-204,2117,Arid1b-204;Arid1b-201;Arid1b-207;Arid1b-202;Arid1b-203;Arid1b-206,Arid1b;Arid1b;Arid1b;Arid1b;Arid1b;Arid1b,0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,11,239985,ENSMUSG00000069729,conserved gene but different region,17,4996255,4996864,610,*,610,84,0.778688525,0.908607299,0.137704918,5.40E-77,CpGisland,TRUE,U1,Pr-A
9126,cg23505379,0.0000037,0.00000502,0.737355914,0.46146366,gain,ns,0.00000853,0.00000854,0.998873763,0.31863489,pos,ns,0.005287566,0.002500606,2.114514239,0.03526935,pos,ns,1.452602542,-0.000174026,0.000086,-2.02365868,0.043862901,neg,ns,0.922974981,Gm4791,Gm4791_Intergenic_downstream,9,47055111,47055160,47055111,47055112,50,-,CGGGACATAGGTCTCCCCAATAATGATAGTCTACATGCATTAGCATATAT,Distal Intergenic,9,46998741,47003860,5120,1,Gm4791-201,56419,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,18,215467,ENSMUSG00000094893,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20167,cg26745394,0.0000601,0.0000158,3.794014979,0.000178226,gain,ns,0.0000269,0.0000269,0.998736381,0.318701347,pos,ns,0.024535245,0.00788484,3.111698641,0.002033329,pos,ns,2.691792304,-0.00173437,0.000271159,-6.396135969,5.86E-10,neg,yes,0.480378193,Adam11,Adam11_threeUTR,11,102777657,102777706,102777657,102777658,50,-,CGACCCAGCAGGGGGCAGTGTGATGCCGGCCACGTCATCCCTCCCGCTGT,3' UTR,11,102761439,102780262,18824,1,Adam11-201,16218,Adam11-201;Adam11-202;Adam11-204;Adam11-205;Adam11-209;Adam11-206,Adam11;Adam11;Adam11;Adam11;Adam11;Adam11,0;0;0;3576;3540;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,2,11488,ENSMUSG00000020926,conserved gene but different region,11,102777638,102777838,201,*,201,14,0.641791045,0.688356164,0.069651741,7.35E-09,CpGisland,TRUE,U13,Hc-P
2515,cg17489311,-0.000046,0.00000734,-6.261251842,1.27E-09,loss,yes,0.0000125,0.0000125,0.998530254,0.318801076,pos,ns,-0.007169312,0.003655358,-1.961315856,0.050737014,neg,ns,1.294675094,0.000122831,0.000125707,0.977116826,0.329273204,pos,ns,0.898563156,Pkhd1,Pkhd1_Intron,1,20135407,20135456,20135455,20135456,50,+,AAATGAATTTGACAGCAAACATCATAACAGTTAGCAGTAATGTGTGTTCG,"Intron (Pkhd1-201/Pkhd1, intron 60 of 66)",1,20057779,20618064,560286,2,Pkhd1-201,482608,Pkhd1-201,Pkhd1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,25,241035,ENSMUSG00000043760,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24870,cg11175173,-0.0000387,0.0000149,-2.598963728,0.009797625,loss,ns,-0.0000252,0.0000253,-0.99849776,0.318816799,neg,ns,0.024275383,0.007406162,3.277727736,0.00116531,pos,ns,2.933558566,-0.00202553,0.000254697,-7.952694167,3.44E-14,neg,yes,0.519503358,Rnf19b,Rnf19b_Exon,4,129082795,129082844,129082843,129082844,50,-,AGCCAGTCTTGGTGCAATTAGTGACAACGCAAGCACTCGTGCTATGGCCG,"Exon (Rnf19b-206/Rnf19b, exon 8 of 9)",4,129058271,129084526,26256,1,Rnf19b-206,24524,Rnf19b-206;Rnf19b-201;Rnf19b-205;Rnf19b-202;Rnf19b-203;Rnf19b-204,Rnf19b;Rnf19b;Rnf19b;Rnf19b;Rnf19b;Rnf19b,0;0;0;0;0;-1041,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,75234,ENSMUSG00000028793,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21835,cg07040792,-0.000028,0.0000082,-3.40700534,0.000743458,loss,ns,0.0000139,0.0000139,0.998275816,0.318924207,pos,ns,-0.003507024,0.004083425,-0.858843727,0.391090333,neg,ns,0.407722919,0.0000158,0.000140429,0.112620457,0.910404358,pos,ns,0.642116224,Lmo1,Lmo1_Intergenic_upstream,7,109232014,109232063,109232014,109232015,50,+,CGGGGCCTGTGAGTGGGGCTGCTTTTAAACCGTAAATTATGAAGGATTAG,Distal Intergenic,7,109138675,109175207,36533,2,Lmo1-202,-56807,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,34,66,109594,ENSMUSG00000036111,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15875,cg16198067,0.00000212,0.0000101,0.210638722,0.833307581,gain,ns,0.0000171,0.0000171,0.998265864,0.318929024,pos,ns,0.0011656,0.005012226,0.23255131,0.816263296,pos,ns,0.088169732,0.000160383,0.00017237,0.930455189,0.352859456,pos,ns,0.200051366,Gm6411,Gm6411_Exon,13,83739589,83739638,83739589,83739590,50,+,CGCCTAGCATTGGAAATGAAAGTGACATTTACGCCACAACCCACGTGTGC,"Exon (C130071C03Rik-201/C130071C03Rik-201, exon 4 of 4)",13,83761132,83762335,1204,2,Gm6411-201,22697,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,36,623241,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
5450,cg25490255,0.0000706,0.0000158,4.479202565,0.0000106,gain,ns,0.0000267,0.0000268,0.997910832,0.31910089,pos,ns,0.038405295,0.007840624,4.89824456,0.00000156,pos,ns,5.80688115,-0.001122515,0.000269638,-4.163038815,0.0000407,neg,ns,0.367922268,Mvb12b,Mvb12b_Intergenic_upstream,2,33966833,33966882,33966881,33966882,50,-,CAAGATGTTGTCTCCTCCGCAGACGCTTTCTGCTCTGGTAAGTGTGTCCG,Distal Intergenic,2,33729953,33887946,157994,2,Mvb12b-201,-78936,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,16,47,72543,ENSMUSG00000038740,mapped to different genes,2,33966422,33966984,563,*,563,36,0.555950266,0.830587657,0.063943162,1.24E-20,CpGisland,TRUE,NA,NRS
12810,cg23669055,0.0000476,0.00001,4.753514424,0.00000307,gain,ns,-0.000017,0.000017,-0.997875767,0.319117868,neg,ns,0.025730663,0.004981552,5.165190662,0.000000431,pos,ns,6.365926809,-0.000701383,0.000171315,-4.094108301,0.0000541,neg,ns,0.519268669,Jmjd1c,Jmjd1c_Exon,10,67224066,67224115,67224114,67224115,50,-,GGATTACTTAGTCACATTCCTGTCAGACCTTCCAGTGCAGAGCCTCATCG,"Exon (Jmjd1c-210/Jmjd1c, exon 9 of 10)",10,67096492,67224962,128471,1,Jmjd1c-210,127574,Jmjd1c-210;Jmjd1c-211;Jmjd1c-201;Jmjd1c-206,Jmjd1c;Jmjd1c;Jmjd1c;Jmjd1c,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,9,108829,ENSMUSG00000037876,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21538,cg23536300,-0.00000367,0.0000019,-1.927948626,0.054774749,loss,ns,0.00000323,0.00000323,0.997814862,0.319147358,pos,ns,0.0000442,0.000947043,0.046619571,0.962846451,pos,ns,0.016442966,0.00000424,0.0000326,0.130300876,0.896412898,pos,ns,0.066437072,Ppp1r12a,Ppp1r12a_Exon,10,108162588,108162637,108162588,108162589,50,+,CGCCGACATCAATTACGCCAATGTGGACGGACTCACTGCCCTGCACCAGG,Promoter (<=1kb),10,108162193,108277351,115159,1,Ppp1r12a-205,395,Ppp1r12a-205;Ppp1r12a-201,Ppp1r12a;Ppp1r12a,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,8,17931,ENSMUSG00000019907,conserved gene and region,10,108161556,108162873,1318,*,1318,157,0.7215478,0.920620373,0.119119879,7.64E-132,CpGisland,TRUE,U1,Pr-A
7855,cg11201460,0.0000407,0.00000628,6.481707183,3.57E-10,gain,yes,0.0000106,0.0000107,0.997789217,0.319159776,pos,ns,0.009636435,0.003126719,3.081964253,0.002241015,pos,ns,2.649555314,-0.000323352,0.000107528,-3.007158001,0.002852828,neg,ns,0.137077764,Pax5,Pax5_Intron,4,44558584,44558633,44558584,44558585,50,+,CGAGCAAATTATGGTAATTTTGTTATTACAAATGCATAGAAATTTCCAAA,"Intron (Pax5-201/Pax5, intron 8 of 9)",4,44524757,44710487,185731,2,Pax5-201,151854,Pax5-201;Pax5-202;Pax5-203;Pax5-204;Pax5-205;Pax5-207;Pax5-206;Pax5-209;Pax5-210;Pax5-212;Pax5-213;Pax5-214;Pax5-215;Pax5-220,Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,19,45,18507,ENSMUSG00000014030,conserved gene and region,4,44558357,44558585,229,*,229,14,0.628820961,0.624342746,0.061135371,3.89E-08,CpGisland,TRUE,U11,Tr-P
15071,cg16844237,0.00000998,0.0000047,2.124125961,0.034450979,gain,ns,0.00000796,0.00000798,0.997720619,0.319192994,pos,ns,0.00492183,0.002337965,2.10517696,0.036080263,pos,ns,1.442730306,-0.00010234,0.0000804,-1.272852834,0.204024028,neg,ns,0.876465429,Tmem229b,Tmem229b_Exon,12,78964858,78964907,78964858,78964859,50,-,CGTTGAACTGGCGCAGGATGAAGCCGGTGGTGAACTCCCACAGGTAGGTC,"Exon (Tmem229b-202/Tmem229b, exon 3 of 3)",12,78961795,78983478,21684,2,Tmem229b-202,18571,Tmem229b-202;Tmem229b-206;Tmem229b-204;Tmem229b-201;Tmem229b-207,Tmem229b;Tmem229b;Tmem229b;Tmem229b;Tmem229b,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,268567,ENSMUSG00000046157,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11,cg07141917,0.0000299,0.00000701,4.261936785,0.0000269,gain,ns,0.0000119,0.0000119,0.997685204,0.319210145,pos,ns,-0.004615499,0.003489511,-1.322677664,0.186917505,neg,ns,0.728350024,-0.0000475,0.000120004,-0.3958409,0.692494692,neg,ns,0.743945536,Crem,Crem_threeUTR,18,3268022,3268071,3268070,3268071,50,-,TTGAGTTCCTCAATGAGAGTCTTGTTTTGGTTTTCAAGCACAGCCACACG,3' UTR,18,3266048,3327591,61544,2,Crem-230,59520,Crem-230;Crem-228;Crem-204;Crem-233;Crem-201;Crem-203;Crem-239;Crem-219;Crem-220;Crem-234;Crem-209;Crem-229;Crem-213;Crem-212;Crem-206;Crem-202;Crem-208;Crem-224;Crem-237;Crem-211;Crem-217;Crem-223;Crem-232;Crem-215;Crem-216;Crem-231;Crem-222;Crem-205;Crem-218;Crem-225;Crem-235;Crem-207;Crem-236,Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,4,12916,ENSMUSG00000063889,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1849,cg02083803,-0.000044,0.0000128,-3.433306903,0.000677338,loss,ns,0.0000217,0.0000218,0.997649176,0.319227592,pos,ns,-0.013581757,0.00637972,-2.12889544,0.034050978,neg,ns,1.467870407,0.000322855,0.000219398,1.47154845,0.14215725,pos,ns,0.552956666,Psat1,Psat1_Intergenic_downstream,19,15584599,15584648,15584647,15584648,50,+,TCTGATTCTATAAAATGAGTTCACCAGAAGGTGCAGACCCAGCACATTCG,Distal Intergenic,19,15905130,15909712,4583,2,Psat1-204,325064,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,14,17,107272,ENSMUSG00000024640,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25652,cg16726355,-0.00000308,0.00000119,-2.598354853,0.009814638,loss,ns,0.00000201,0.00000202,0.997240423,0.319425591,pos,ns,0.000102623,0.00059087,0.173681902,0.862228819,pos,ns,0.064377465,0.00000971,0.0000203,0.477957606,0.633017235,pos,ns,0.0317419,Eif4g3,Eif4g3_Exon,4,137993919,137993968,137993967,137993968,50,+,TCTGGGGGGGTTGGTGGCTTCGCTTTGCCATGAGTTTACCGCAGAAACCG,Promoter (<=1kb),4,137993022,138105419,112398,1,Eif4g3-210,897,Eif4g3-210;Eif4g3-201;Eif4g3-204;Eif4g3-203;Eif4g3-202;Eif4g3-205;Eif4g3-206;Eif4g3-207;Eif4g3-215,Eif4g3;Eif4g3;Eif4g3;Eif4g3;Eif4g3;Eif4g3;Eif4g3;Eif4g3;Eif4g3,0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,10,230861,ENSMUSG00000028760,conserved gene but different region,4,137992842,137994345,1504,*,1504,165,0.691489362,0.925973604,0.109707447,7.33E-132,CpGisland,TRUE,U1,Pr-A
19830,cg23263253,0.00000168,0.00000377,0.446518059,0.655534824,gain,ns,0.00000639,0.00000641,0.996990234,0.319546822,pos,ns,0.001205612,0.001877429,0.642161501,0.521242914,pos,ns,0.282959836,0.00000329,0.0000646,0.050880858,0.959453228,pos,ns,0.914421102,Med12,Med12_Exon,X,101284312,101284361,101284312,101284313,50,+,CGCTACAGCTTTGTCTGCAATGCCCTTATGCACGTCTGTGTGGGGCACCA,"Exon (Med12-204/Med12, exon 22 of 46)",20,101274030,101297465,23436,1,Med12-204,10282,Med12-204;Med12-203;Med12-201;Med12-202;Med12-209;Med12-207;Med12-208,Med12;Med12;Med12;Med12;Med12;Med12;Med12,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,15,15,59024,ENSMUSG00000079487,conserved gene and region,X,101284185,101284351,167,*,167,10,0.54491018,0.809108527,0.05988024,0.00000716,CpGisland,TRUE,U10,Tr-S
10007,cg22454306,0.00000292,0.00000435,0.671730303,0.502255679,gain,ns,-0.00000736,0.00000738,-0.996909872,0.319585768,neg,ns,-0.006565529,0.002163312,-3.034943635,0.002609617,neg,ns,2.583423253,0.00019125,0.0000744,2.57070044,0.010615783,pos,ns,0.902328182,Skap2,Skap2_Intergenic_downstream,6,51847017,51847066,51847017,51847018,50,+,CGTCCCCCCAAAGACAGGGGACAGATGTTTAACATCAGCCTATTAATCCC,Distal Intergenic,6,51859104,51871929,12826,2,Skap2-207,24863,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,19,54353,ENSMUSG00000059182,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22633,cg11531264,-0.0000236,0.00000634,-3.716838251,0.000239301,loss,ns,-0.0000107,0.0000108,-0.99689894,0.319591066,neg,ns,-0.001930073,0.003154163,-0.611912848,0.541043941,neg,ns,0.266767462,-0.000129484,0.000108471,-1.193713692,0.233502666,neg,ns,0.873735657,Tsen2,Tsen2_Intergenic_upstream,6,115503738,115503787,115503738,115503739,50,+,CGCCTCAATCACGTCTCTTTACAGTTGGGCAGAGCCGGCTGGGCCTCCTC,Distal Intergenic,6,115544664,115554272,9609,1,Tsen2-203,-40877,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,381802,ENSMUSG00000042389,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16444,cg25501955,0.0000209,0.00000337,6.196332341,1.84E-09,gain,yes,0.0000057,0.00000572,0.996871256,0.319604484,pos,ns,-0.001828789,0.001676209,-1.091026854,0.276108329,neg,ns,0.558920492,0.000163239,0.0000576,2.831812014,0.004931303,pos,ns,0.911772958,Ric8b,Ric8b_Exon,10,85008750,85008799,85008750,85008751,50,+,CGTTATCAAGCTAAGTGGCAAGCGGGAAGCTGAAACTCGTATAGGTAAAT,"Exon (Ric8b-204/Ric8b, exon 1 of 3)",10,84917616,85016447,98832,1,Ric8b-201,91134,Ric8b-201;Ric8b-202;Ric8b-205;Ric8b-204,Ric8b;Ric8b;Ric8b;Ric8b,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,14,237422,ENSMUSG00000035620,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
17501,cg15766096,-0.00000999,0.0000053,-1.884105119,0.060486376,loss,ns,0.00000898,0.00000901,0.996719487,0.319678048,pos,ns,0.000292124,0.002639814,0.11066064,0.911957067,pos,ns,0.040025607,-0.00017156,0.0000908,-1.889786547,0.059719353,neg,ns,0.941227364,Tox3,Tox3_Intergenic_upstream,8,90536378,90536427,90536426,90536427,50,-,ATTATTCTTTTTTCACCCAGAAATGAAGTTCGTTTGGCTGGAATTCAGCG,Distal Intergenic,8,90247040,90348343,101304,2,Tox3-201,-188084,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,19,244579,ENSMUSG00000043668,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13723,cg17008497,0.000000758,0.00000595,0.127409717,0.898698732,gain,ns,-0.0000101,0.0000101,-0.996690714,0.319691996,neg,ns,-0.004412983,0.00296042,-1.490661395,0.137067202,neg,ns,0.863066451,0.0000684,0.000101809,0.671503489,0.502399913,pos,ns,0.890516037,Rapgef4,Rapgef4_Exon,2,72256317,72256366,72256365,72256366,50,-,ATTGACAACCAGAGAACTTTATCACAGATGTCACACAGATTAGAGCCTCG,"Exon (Rapgef4-202/Rapgef4, exon 31 of 31)",2,71981240,72257474,276235,1,Rapgef4-202,275077,Rapgef4-202;Rapgef4-203;Rapgef4-201;Rapgef4-210;Rapgef4-206,Rapgef4;Rapgef4;Rapgef4;Rapgef4;Rapgef4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,11,56508,ENSMUSG00000049044,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2365,cg27078219,-0.00000192,0.00000246,-0.780660574,0.435597855,loss,ns,0.00000416,0.00000417,0.996672442,0.319700853,pos,ns,0.003789989,0.001221944,3.101606059,0.002101746,pos,ns,2.677419824,-0.000169043,0.000042,-4.022666728,0.0000724,neg,ns,0.944424542,Meis1,Meis1_Intergenic_upstream,11,19174759,19174808,19174759,19174760,50,-,CGAAGCTGTGCCATAAGAAATCAAAACCATAATAATGTCTTTGGGTTTTG,Distal Intergenic,11,18879817,19018985,139169,2,Meis1-206,-155823,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,88,17268,ENSMUSG00000020160,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25791,cg21187101,0.0000126,0.00000282,4.456596682,0.0000117,gain,ns,-0.00000478,0.0000048,-0.996424686,0.319820973,neg,ns,0.004518203,0.001405615,3.214394825,0.001444937,pos,ns,2.840151033,-0.000123088,0.0000483,-2.546346938,0.011369166,neg,ns,0.076876028,Uncx,Uncx_Intergenic_downstream,5,139548709,139548758,139548709,139548710,50,+,CGGTGGCTGCTGCGGGGACTGGGTTTCTTGCCCAAAGGGTTATTATACAT,Distal Intergenic,5,139543898,139545268,1371,1,Uncx-202,4811,Uncx-201;Uncx-202,Uncx;Uncx,0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,59,88,22255,ENSMUSG00000029546,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
17268,cg19809328,-0.00000875,0.00000366,-2.392873635,0.017311875,loss,ns,0.00000619,0.00000621,0.99624433,0.319908433,pos,ns,0.003231996,0.001820173,1.77565346,0.076771023,pos,ns,1.114802673,-0.0000657,0.0000626,-1.049337472,0.294840194,neg,ns,0.913418432,Nrxn3,Nrxn3_Intron,12,89354365,89354414,89354365,89354366,50,-,CGGAAGGGTGGACTGATTGTTTTTGGATGTCTGCAGCTGTTACCTTGAAG,"Intron (Nrxn3-213/Nrxn3, intron 6 of 18)",12,88722986,90332878,1609893,1,Nrxn3-213,631379,Nrxn3-213;Nrxn3-208;Nrxn3-205;Nrxn3-201;Nrxn3-210,Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,39,18191,ENSMUSG00000066392,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19960,cg25597197,-0.00000494,0.0000018,-2.745951117,0.006385999,loss,ns,0.00000304,0.00000306,0.99621884,0.319920795,pos,ns,0.003076161,0.00089519,3.436321655,0.00067012,pos,ns,3.173847238,-0.0000485,0.0000308,-1.575151392,0.116241455,neg,ns,0.964926069,Clpb,Clpb_Intron,7,101765908,101765957,101765908,101765909,50,-,CGAATTGGCTGAAACCAATTTCGGTCACATCAACCCCTGGTAAGTGCTGG,"Intron (Clpb-201/Clpb, intron 7 of 15)",7,101663633,101790168,126536,1,Clpb-201,102275,Clpb-201;Clpb-202;Clpb-211;Clpb-208;Clpb-207;Clpb-204;Clpb-209,Clpb;Clpb;Clpb;Clpb;Clpb;Clpb;Clpb,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,21,21,20480,ENSMUSG00000001829,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3494,cg07270839,-0.0000129,0.00000427,-3.018731012,0.002749106,loss,ns,-0.00000722,0.00000725,-0.99619934,0.319930253,neg,ns,0.0000566,0.002122958,0.02665455,0.978752414,pos,ns,0.009327154,-0.000111081,0.000073,-1.521479612,0.129158861,neg,ns,0.940738695,Bcl11a,Bcl11a_Exon,11,24165086,24165135,24165134,24165135,50,+,AGCGTGTACAGTACCCTGGAGAAACACATGAAAAAATGGCACAGTGATCG,"Exon (Bcl11a-202/Bcl11a, exon 4 of 4)",11,24078056,24173194,95139,1,Bcl11a-201,87030,Bcl11a-201;Bcl11a-203;Bcl11a-202;Bcl11a-204;Bcl11a-206,Bcl11a;Bcl11a;Bcl11a;Bcl11a;Bcl11a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,51,98,14025,ENSMUSG00000000861,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21280,cg03572508,0.00000265,0.00000193,1.375591418,0.169941279,gain,ns,0.00000326,0.00000327,0.995993339,0.320030173,pos,ns,0.001647846,0.000959428,1.717529382,0.086881152,pos,ns,1.06107443,-0.0000425,0.000033,-1.288961009,0.198372653,neg,ns,0.958606917,Dock3,Dock3_Exon,9,107082408,107082457,107082408,107082409,50,-,CGCTTAACCTCCCGCACCTGATCCTGAGTCAGGTGACCAGACAGTAGCTG,"Exon (Dock3-201/Dock3, exon 6 of 53)",9,106892825,107231909,339085,2,Dock3-201,149452,Dock3-201;Dock3-207;Dock3-209,Dock3;Dock3;Dock3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,9,208869,ENSMUSG00000039716,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16182,cg24868356,-0.0000153,0.00000866,-1.770070431,0.07769829,loss,ns,0.0000147,0.0000147,0.995959721,0.320046482,pos,ns,0.003804528,0.004310636,0.882590829,0.378141259,pos,ns,0.422345934,0.0000445,0.000148242,0.300139465,0.764271942,pos,ns,0.847902831,Lhx1,Lhx1_Intergenic_upstream,11,84564293,84564342,84564293,84564294,50,+,CGACACTGGAGCAACATGAAATCATTAAGGCAAAACAATAAATAAAGGCC,Distal Intergenic,11,84518284,84525535,7252,2,Lhx1-201,-38758,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,20,23,16869,ENSMUSG00000018698,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6710,cg13956279,0.0000921,0.000013,7.110696486,8.01E-12,gain,yes,-0.0000219,0.000022,-0.99572227,0.320161686,neg,ns,0.018358625,0.006449146,2.846675379,0.004712506,pos,ns,2.326748104,-0.000326367,0.000221786,-1.471543326,0.142158634,neg,ns,0.210979623,Dennd1a,Dennd1a_Intron,2,38144516,38144565,38144564,38144565,50,+,CACGCTGCTTGTTTTGACAGTGGATCCCCCTAGATAGTTGGGATTAGTCG,"Intron (Dennd1a-201/Dennd1a, intron 3 of 21)",2,37798991,38287375,488385,2,Dennd1a-201,142810,Dennd1a-201;Dennd1a-207;Dennd1a-210;Dennd1a-204;Dennd1a-202;Dennd1a-209;Dennd1a-208,Dennd1a;Dennd1a;Dennd1a;Dennd1a;Dennd1a;Dennd1a;Dennd1a,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,46,227801,ENSMUSG00000035392,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10135,cg01026068,-0.00000515,0.00000521,-0.989057704,0.323406255,loss,ns,-0.00000882,0.00000885,-0.995715008,0.320165209,neg,ns,0.00206298,0.002593805,0.795349089,0.427019013,pos,ns,0.369552788,-0.000127178,0.0000892,-1.425745902,0.154947857,neg,ns,0.940715859,Neb,Neb_Exon,2,52201454,52201503,52201454,52201455,50,-,CGTAGCAACCAATGCCTTTCAGCCAGTTGAGGTCATCCTTGTATACAATC,"Exon (Neb-202/Neb, exon 107 of 157)",2,52136647,52338798,202152,2,Neb-202,137295,Neb-202;Neb-201;Neb-203;Neb-213;Neb-214,Neb;Neb;Neb;Neb;Neb,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,8,17996,ENSMUSG00000026950,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21403,cg06149306,0.00000209,0.00000139,1.49802121,0.135145281,gain,ns,0.00000235,0.00000236,0.995668767,0.320187648,pos,ns,0.000693124,0.000692778,1.000499199,0.317849295,pos,ns,0.497778747,0.00000613,0.0000238,0.257151431,0.797232473,pos,ns,0.957462804,Ahcyl1,Ahcyl1_Exon,3,107671106,107671155,107671154,107671155,50,+,ACACAAGGGGCAGCTACTCCAGAATCTGTTACCTGTGAACACCAGTCACG,"Exon (Ahcyl1-201/Ahcyl1, exon 7 of 17)",3,107663118,107677767,14650,2,Ahcyl1-203,6612,Ahcyl1-203;Ahcyl1-201;Ahcyl1-205;Ahcyl1-202;Ahcyl1-206;Ahcyl1-208;Ahcyl1-204,Ahcyl1;Ahcyl1;Ahcyl1;Ahcyl1;Ahcyl1;Ahcyl1;Ahcyl1,0;0;-532;-3623;-1597;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,4,229709,ENSMUSG00000027893,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25320,cg12281001,-0.000058,0.00000597,-9.713994951,1.20E-19,loss,yes,0.0000101,0.0000101,0.995645289,0.320199041,pos,ns,-0.009106829,0.002970401,-3.065858628,0.002361497,neg,ns,2.62681255,0.000100016,0.000102152,0.979094905,0.328296549,pos,ns,0.816322198,Lgr6,Lgr6_Intron,1,134998424,134998473,134998424,134998425,50,-,CGGTTGCCTTGGGTAAGTGGGTCAGGAGACAAAGCCACAAAACCATCCCT,"Intron (Lgr6-201/Lgr6, intron 12 of 17)",1,134983301,135105276,121976,2,Lgr6-201,106803,Lgr6-201;Lgr6-202;Lgr6-203,Lgr6;Lgr6;Lgr6,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,2,329252,ENSMUSG00000042793,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16350,cg09716825,-0.0000148,0.00000629,-2.353490028,0.019222288,loss,ns,0.0000106,0.0000107,0.995584904,0.320228344,pos,ns,-0.00340379,0.003131745,-1.086866845,0.277940019,neg,ns,0.556048917,-0.0000547,0.0001077,-0.508221777,0.611659269,neg,ns,0.816611051,Mrm1,Mrm1_Intron,11,84766203,84766252,84766251,84766252,50,-,CCCACTAATACACTAGGCTATTACATCGCTATGTCTCTTATTTTAGCCCG,"Intron (Gm11431-201/Gm11431-201, intron 2 of 2)",11,84814743,84815390,648,2,Mrm1-203,49187,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,42,217038,ENSMUSG00000018405,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22528,cg06493372,0.0000394,0.00000807,4.881092522,0.00000169,gain,yes,-0.0000137,0.0000137,-0.995453892,0.320291928,neg,ns,0.006361874,0.004018959,1.582965391,0.11444899,pos,ns,0.941388037,-0.000217386,0.000138212,-1.572846626,0.11677436,neg,ns,0.497318397,Foxe3,Foxe3_Promoter,4,114929470,114929519,114929470,114929471,50,+,CGGCCTTCCCACTGCCCTTTGGAGGCCAAAGGCCCAGGTCAGGGCACACA,Promoter (3-4kb),4,114925147,114926013,867,2,Foxe3-201,-3457,Foxe3-201,Foxe3,-3457,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,4,4,30923,ENSMUSG00000044518,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
27796,cg07444563,0.0000011,0.00000192,0.575408049,0.565432782,gain,ns,0.00000324,0.00000326,0.995368618,0.320333318,pos,ns,0.000867412,0.000954908,0.908371822,0.364387434,pos,ns,0.438436608,-0.0000405,0.0000328,-1.233054689,0.218489566,neg,ns,0.962285113,Gpatch2,Gpatch2_Intron,1,187341312,187341361,187341312,187341313,50,-,CGCTTGTCAACAAATGTAATTATGTTTCGATATAAACAAGATTGGTGATT,"Intron (Gpatch2-207/Gpatch2, intron 9 of 10)",1,187215511,187349640,134130,1,Gpatch2-207,125801,Gpatch2-207;Gpatch2-202;Gpatch2-204;Gpatch2-206;Gpatch2-208,Gpatch2;Gpatch2;Gpatch2;Gpatch2;Gpatch2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,10,67769,ENSMUSG00000039210,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22086,cg27147458,-0.00000962,0.00000276,-3.493356173,0.000546407,loss,ns,0.00000466,0.00000468,0.995142259,0.320443205,pos,ns,-0.001815257,0.001371223,-1.323823016,0.186537182,neg,ns,0.729234588,0.0000599,0.0000472,1.269477826,0.205222885,pos,ns,0.952192167,Kcnj16,Kcnj16_Intergenic_upstream,11,110802299,110802348,110802347,110802348,50,+,TGTAATGGTTTTTGCAATCTTGATATGAAACAGCACCGTGGCACTCAACG,Distal Intergenic,11,110968033,111027965,59933,1,Kcnj16-206,-165685,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,16517,ENSMUSG00000051497,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8642,cg01635604,0.0000901,0.0000163,5.532596687,6.72E-08,gain,yes,-0.0000275,0.0000277,-0.995132165,0.320448106,neg,ns,0.027052957,0.008101891,3.339091491,0.00094308,pos,ns,3.025451425,-0.000415917,0.000278623,-1.492757521,0.136517681,neg,ns,0.481329646,Btrc,Btrc_Intron,19,45476315,45476364,45476363,45476364,50,+,GGCTGTTGTAATCCAATTATAGCAGCATAAGCAATTTGTTAGACACTCCG,"Intron (Btrc-204/Btrc, intron 1 of 2)",19,45363734,45507736,144003,1,Btrc-204,112581,Btrc-204;Btrc-201;Btrc-210;Btrc-202;Btrc-203;Btrc-209,Btrc;Btrc;Btrc;Btrc;Btrc;Btrc,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,63,98,12234,ENSMUSG00000025217,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
22447,cg25923654,0.0000792,0.00000821,9.656331197,1.85E-19,gain,yes,-0.0000139,0.0000139,-0.995098362,0.320464518,neg,ns,0.011730747,0.004084584,2.87195647,0.004360547,pos,ns,2.360459003,-0.000365925,0.000140469,-2.605030833,0.009629537,neg,ns,0.094261469,Fam222a,Fam222a_Intron,5,114571849,114571898,114571897,114571898,50,+,GCTAAGTGATTTGCATCCAAGGTAATCACTTTTATCTCAGAAGGATGTCG,"Intron (Fam222a-201/Fam222a, intron 1 of 2)",5,114568016,114613220,45205,1,Fam222a-201,3833,Fam222a-201;Fam222a-202,Fam222a;Fam222a,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,16,433940,ENSMUSG00000041930,conserved gene and region,5,114571569,114571856,288,*,288,32,0.645833333,1.067531565,0.111111111,3.20E-26,CpGisland,TRUE,NA,NRS
17185,cg12871480,9.89E-08,0.00000157,0.062994298,0.949811642,gain,ns,0.00000265,0.00000267,0.995033287,0.320496115,pos,ns,0.003176612,0.000781097,4.066859205,0.0000605,pos,ns,4.218344385,-0.000095,0.0000269,-3.534879247,0.000470163,neg,ns,0.967407803,Ash1l,Ash1l_threeUTR,3,89079124,89079173,89079124,89079125,50,+,CGGGGCAAAGCACTACATCACTGCAAATAGATACAGAGTTAGTCTGCATG,3' UTR,3,88950622,89079375,128754,1,Ash1l-202,128502,Ash1l-202;Ash1l-201;Gm43738-201;Rusc1-203;Rusc1-202;Rusc1-201,Ash1l;Ash1l;Gm43738;Rusc1;Rusc1;Rusc1,0;0;21926;10872;14117;14138,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,5,192195,ENSMUSG00000028053,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19829,cg11441339,-0.00000934,0.0000117,-0.799763801,0.424460062,loss,ns,-0.0000197,0.0000198,-0.994958432,0.320532463,neg,ns,-0.002992499,0.005814848,-0.514630611,0.607177878,neg,ns,0.21668406,-0.0000832,0.000199972,-0.416088564,0.677633105,neg,ns,0.755076405,Med12,Med12_Exon,X,101283387,101283436,101283387,101283388,50,-,CGGCACTATCATGCCTGCCTCATCCTCAACCAGGACCAGATGGCACAGGT,"Exon (Med12-204/Med12, exon 20 of 46)",20,101274030,101297465,23436,1,Med12-204,9357,Med12-204;Med12-203;Med12-201;Med12-202;Med12-209;Med12-207;Med12-208,Med12;Med12;Med12;Med12;Med12;Med12;Med12,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,15,15,59024,ENSMUSG00000079487,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25390,cg04404249,0.000000271,0.00000246,0.10994212,0.912526416,gain,ns,0.00000416,0.00000418,0.994791084,0.320613733,pos,ns,0.001307168,0.001226041,1.066169735,0.287176566,pos,ns,0.541851002,-0.0000728,0.0000422,-1.727231133,0.085122215,neg,ns,0.945289299,Gm9341,Gm9341_Intergenic_downstream,7,136196655,136196704,136196703,136196704,50,+,CCGGGCTTCATTAATCTTTGTTGAATACAATGGCATACATCTTTAATGCG,Distal Intergenic,7,135952798,135953783,986,1,Gm9341-201,243857,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,27,28,668764,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22284,cg19619847,-0.0000284,0.00000662,-4.287530115,0.0000242,loss,ns,-0.0000112,0.0000112,-0.994675983,0.320669639,neg,ns,-0.003620742,0.003292461,-1.099706864,0.272313127,neg,ns,0.564931423,0.0000114,0.000113227,0.100788476,0.919783528,pos,ns,0.944433509,Tead1,Tead1_Exon,7,112876153,112876202,112876153,112876154,50,-,CGTCAGATTTATGACAAATTTCCTGAAAAGAAAGGTGGCTTAAAGGAACT,"Exon (Tead1-203/Tead1, exon 9 of 12)",7,112679318,112899459,220142,1,Tead1-203,196835,Tead1-203;Tead1-216;Tead1-217;Tead1-201;Tead1-204;Tead1-206;Tead1-202;Tead1-211;Tead1-207;Tead1-210;Tead1-212,Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,16,21676,ENSMUSG00000055320,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15046,cg01996475,-0.000000647,0.00000104,-0.625359293,0.532195351,loss,ns,0.00000175,0.00000176,0.994622193,0.320695767,pos,ns,0.000887814,0.0005153,1.722906954,0.085902586,pos,ns,1.065993764,-0.0000141,0.0000177,-0.798332225,0.425288875,neg,ns,0.96742793,Gphn,Gphn_Exon,12,78623337,78623386,78623337,78623338,50,-,CGGGTTACAACAGGTGCTCCAATACCCTGCGGTGCTGATGCAGTAGTACA,"Exon (Gphn-201/Gphn, exon 15 of 24)",12,78226379,78684772,458394,1,Gphn-201,396958,Gphn-201;Gphn-202,Gphn;Gphn,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,11,268566,ENSMUSG00000047454,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14194,cg17247114,0.00000838,0.00000343,2.440678397,0.015219266,gain,ns,0.0000058,0.00000583,0.994577261,0.320717594,pos,ns,0.006054396,0.001708118,3.54448263,0.000454009,pos,ns,3.342935078,-0.0000668,0.0000587,-1.137852888,0.256060566,neg,ns,0.06484951,Gm28230,Gm28230_Intron,2,74740795,74740844,74740843,74740844,50,+,GTCATAAATTTTGCTACAAACCACAATGACAGGTGCATTGATATGCACCG,"Intron (Hoxd3-203/Hoxd3, intron 1 of 2)",2,74726728,74747918,21191,1,Gm28230-201,14067,Gm28230-201;Hoxd3-203;Hoxd3-205;Hoxd3-202;Hoxd3-201;Hoxd3-204;Hoxd3-206,Gm28230;Hoxd3;Hoxd3;Hoxd3;Hoxd3;Hoxd3;Hoxd3,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,23,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
16245,cg13715498,-0.0000447,0.00000904,-4.94052922,0.00000128,loss,yes,0.0000153,0.0000154,0.994552903,0.320729427,pos,ns,-0.0061641,0.004498274,-1.370325587,0.171576794,neg,ns,0.765541452,0.000179466,0.000154695,1.160125128,0.246890551,pos,ns,0.832081236,Lhx1,Lhx1_Intergenic_upstream,11,84641514,84641563,84641562,84641563,50,+,AATGCTGACAAATTAATGATTTCTGAGTAAATGATGTCATTTTTGCACCG,Distal Intergenic,11,84518284,84525535,7252,2,Lhx1-201,-115979,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,20,23,16869,ENSMUSG00000018698,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
27230,cg03053914,-0.00000483,0.00000165,-2.9345044,0.003590279,loss,ns,0.00000278,0.0000028,0.994397117,0.320805113,pos,ns,0.00128036,0.000820032,1.561354393,0.119460412,pos,ns,0.922775992,-0.0000263,0.0000282,-0.930996382,0.352579884,neg,ns,0.043392043,Zbtb37,Zbtb37_fiveUTR,1,161034768,161034817,161034816,161034817,50,-,CAGCACCTACCTCCGGGGGTGGAAATGGGCCGGAATGGGCCGGAACACCG,Promoter (<=1kb),1,161032438,161034816,2379,2,Zbtb37-207,0,Zbtb37-203;Zbtb37-204;Zbtb37-202;Zbtb37-206;Zbtb37-201;Zbtb37-205;Zbtb37-207,Zbtb37;Zbtb37;Zbtb37;Zbtb37;Zbtb37;Zbtb37;Zbtb37,0;0;0;-509;0;-484;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,2,240869,ENSMUSG00000043467,mapped to different genes,1,161034385,161034907,523,*,523,58,0.738049713,0.843712625,0.110898662,4.46E-47,CpGisland,TRUE,U1,Pr-A
4632,cg19401220,0.0000529,0.00000572,9.255281767,3.63E-18,gain,yes,-0.00000966,0.00000972,-0.994346073,0.320829914,neg,ns,0.00727157,0.00284649,2.554573889,0.01110949,pos,ns,1.954305879,0.0000068,0.0000979,0.069420377,0.944699767,pos,ns,0.656885915,Sptan1,Sptan1_Exon,2,29996024,29996073,29996024,29996025,50,+,CGAATTGATGGCATCACCATTCAGGCCCGCCAGTTCCAAGATGCTGGCCA,"Exon (Sptan1-205/Sptan1, exon 17 of 57)",2,29965560,30031448,65889,1,Sptan1-205,30464,Sptan1-205;Sptan1-204;Sptan1-210;Sptan1-203;Sptan1-202;Sptan1-201;Sptan1-208;Sptan1-209,Sptan1;Sptan1;Sptan1;Sptan1;Sptan1;Sptan1;Sptan1;Sptan1,0;0;30347;0;0;0;0;4068,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,7,20740,ENSMUSG00000057738,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1507,cg11772199,0.0000192,0.0000134,1.432678118,0.152957475,gain,ns,0.0000226,0.0000227,0.994195201,0.320903227,pos,ns,0.019702608,0.006661746,2.957574355,0.003339114,pos,ns,2.476368707,-0.000792698,0.000229097,-3.460099798,0.000615661,neg,ns,0.50068363,Gm11819,Gm11819_Intergenic_upstream,4,13298655,13298704,13298655,13298656,50,-,CGTTAGCTATTGTTTTGAAAATGACAGTATGGCCAATAATTTCAATTTCA,Distal Intergenic,4,13444770,13445141,372,1,Gm11819-201,-146115,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,19,22,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18869,cg17050587,-0.00000134,0.00000185,-0.724304989,0.469424786,loss,ns,0.00000313,0.00000314,0.994052488,0.320972586,pos,ns,0.001226576,0.000921372,1.331248723,0.184085347,pos,ns,0.734980781,-0.0000336,0.0000317,-1.06158049,0.2892525,neg,ns,0.953065534,Nfia,Nfia_Exon,4,97783145,97783194,97783193,97783194,50,-,TTCAACCTGCAGGCCCGAAAACGAAAATACTTCAAAAAACATGAAAAGCG,"Exon (Nfia-208/Nfia, exon 2 of 4)",4,97772734,98000466,227733,1,Nfia-208,10411,Nfia-208;Nfia-202;Nfia-203;Nfia-205;Nfia-201;Nfia-204,Nfia;Nfia;Nfia;Nfia;Nfia;Nfia,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,44,18027,ENSMUSG00000028565,conserved gene but different region,4,97783124,97783317,194,*,194,15,0.541237113,1.060495627,0.077319588,4.21E-10,CpGisland,TRUE,NA,NRS
19706,cg25062212,-0.0000244,0.00000869,-2.809696138,0.005273981,loss,ns,-0.0000147,0.0000148,-0.993930508,0.321031876,neg,ns,-0.001772783,0.004323765,-0.410009204,0.682082393,neg,ns,0.166163161,-0.0000902,0.000148694,-0.60654813,0.544594756,neg,ns,0.791268809,Dlg3,Dlg3_Exon,X,100775892,100775941,100775940,100775941,50,-,GTCTCCTTCATCCTGGCAGGAGGCCCAGCTGACCTGAGTGGGGAGCTGCG,"Exon (Dlg3-201/Dlg3, exon 8 of 19)",20,100767722,100818406,50685,1,Dlg3-201,8170,Dlg3-201;Dlg3-204;Dlg3-202;Dlg3-206;Dlg3-203;Dlg3-208,Dlg3;Dlg3;Dlg3;Dlg3;Dlg3;Dlg3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,11,53310,ENSMUSG00000000881,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19518,cg15991138,-0.00000371,0.00000177,-2.090218185,0.037412668,loss,ns,0.00000299,0.00000301,0.993857701,0.321067268,pos,ns,0.001230855,0.000882344,1.394982009,0.164019914,pos,ns,0.78510342,-0.0000392,0.0000303,-1.29076508,0.197746949,neg,ns,0.950984747,Armc8,Armc8_Exon,9,99520494,99520543,99520494,99520495,50,+,CGGATGTCTTCATCATTTGCTCCAAGAGAGGCATAGAGCTTGAATGCAGC,"Exon (Armc8-201/Armc8, exon 12 of 22)",9,99478372,99568899,90528,2,Armc8-201,48356,Armc8-201;Armc8-202;Armc8-203,Armc8;Armc8;Armc8,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,10,74125,ENSMUSG00000032468,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10050,cg07726997,0.00000178,0.00000174,1.01898048,0.309006806,gain,ns,0.00000294,0.00000296,0.993702494,0.321142725,pos,ns,-0.000129073,0.000867794,-0.148737231,0.881857689,neg,ns,0.054601494,0.0000323,0.0000298,1.081122987,0.280482728,pos,ns,0.035636741,Maml3,Maml3_fiveUTR,3,52104198,52104247,52104246,52104247,50,+,ATCAGCCTCCTCCTTGGGTCCAAGGATTAAAATAGTTTAAGTGGAACGCG,Promoter (<=1kb),3,51685907,52105076,419170,2,Maml3-202,829,Maml3-202,Maml3,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,14,32,433586,ENSMUSG00000061143,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20953,cg06275336,-0.00000236,0.00000116,-2.036179918,0.042582039,loss,ns,0.00000196,0.00000197,0.99327803,0.321349145,pos,ns,-0.000181573,0.00057675,-0.314820593,0.753109668,neg,ns,0.123141777,-0.00000142,0.0000198,-0.071721662,0.942869666,neg,ns,0.966186867,Tanc2,Tanc2_Exon,11,105835133,105835182,105835133,105835134,50,-,CGGCAAAACTGCCATCATCTCCAGACTGGTGGCCCTCAGCTGCCATGGTA,"Exon (Tanc2-202/Tanc2, exon 9 of 26)",11,105589991,105929304,339314,1,Tanc2-202,245142,Tanc2-202,Tanc2,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,15,20,77097,ENSMUSG00000053580,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1793,cg14625759,0.0000711,0.0000172,4.135488098,0.0000457,gain,ns,-0.000029,0.0000292,-0.993188119,0.32139288,neg,ns,0.034629991,0.008551325,4.049663877,0.0000649,pos,ns,4.187994255,-0.001046017,0.000294079,-3.556921206,0.00043386,neg,ns,0.343045009,Foxp2,Foxp2_Intron,6,15257717,15257766,15257765,15257766,50,+,GGTGTTTTCTTTTTCTTACTCAAAAAGTGCAAGGTTACACAATACAGACG,"Intron (Foxp2-207/Foxp2, intron 4 of 18)",6,14901349,15441977,540629,1,Foxp2-207,356368,Foxp2-207;Foxp2-213;Foxp2-208;Foxp2-211;Foxp2-205;Foxp2-204;Foxp2-201;Foxp2-210;Foxp2-214;Foxp2-212;Foxp2-209;Foxp2-202;Foxp2-218,Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,38,65,114142,ENSMUSG00000029563,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20741,cg01409964,-0.0000527,0.000012,-4.400932549,0.0000149,loss,ns,0.0000202,0.0000203,0.993167888,0.321402722,pos,ns,-0.008431375,0.005959848,-1.414696337,0.15816119,neg,ns,0.800900077,-0.000185686,0.000204959,-0.905966296,0.365657302,neg,ns,0.494919418,Gm5671,Gm5671_Intron,14,104834582,104834631,104834630,104834631,50,+,GCAGCTTGCAATGCTCGAACAGAAATAAATTTCACTTCCTCAAACTCTCG,"Intron (D130009I18Rik-201/D130009I18Rik-201, intron 2 of 4)",14,105043450,105044354,905,1,Gm5671-201,-208819,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,12,435420,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4583,cg03942000,0.000153101,0.0000143,10.68312711,6.86E-23,gain,yes,-0.0000242,0.0000243,-0.993161174,0.321405988,neg,ns,0.01312411,0.007132751,1.839978756,0.066727246,pos,ns,1.175696802,-0.000297027,0.000245295,-1.210897304,0.226857109,neg,ns,0.621147874,Urm1,Urm1_Intergenic_downstream,2,29846471,29846520,29846471,29846472,50,+,CGGGCTGGCCAGGCAGCTGCAACCTGCGCTCAGGCAGCTCTTAAAGACAT,Distal Intergenic,2,29841648,29844064,2417,1,Urm1-202,4823,Urm1-205;Urm1-206;Urm1-201;Urm1-204;Urm1-202,Urm1;Urm1;Urm1;Urm1;Urm1,26396;19129;19129;19110;4823,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,10,68205,ENSMUSG00000069020,mapped to different genes,2,29846021,29846498,478,*,478,42,0.688284519,0.749440048,0.087866109,1.04E-29,CpGisland,TRUE,U11,Tr-P
20468,cg11863330,0.0000821,0.00000733,11.19176585,1.20E-24,gain,yes,-0.0000124,0.0000125,-0.99312393,0.321424106,neg,ns,0.011701472,0.003649125,3.206651532,0.001483096,pos,ns,2.828830815,-0.000114692,0.000125493,-0.913933879,0.361461868,neg,ns,0.056152545,Hoxc4,Hoxc4_Intergenic_downstream,15,103061680,103061729,103061680,103061681,50,-,CGCCTTTGTACGCGTGATTTATGACTTCAATCTTGGTTCACCGAGAGTTC,Distal Intergenic,15,103034395,103036852,2458,1,Hoxc4-201,27334,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,32,91,15423,ENSMUSG00000075394,mapped to different genes,15,103061537,103061809,273,*,273,19,0.586080586,0.8125,0.06959707,7.69E-12,CpGisland,TRUE,U13,Hc-P
21869,cg16202561,-0.0000439,0.0000115,-3.818179491,0.000162356,loss,ns,0.0000194,0.0000195,0.993026592,0.321471462,pos,ns,-0.006040766,0.005722048,-1.055699985,0.291927345,neg,ns,0.534725222,0.000395193,0.000196781,2.008290143,0.045479574,pos,ns,0.811794364,Gm1943,Gm1943_Intergenic_downstream,8,109311575,109311624,109311575,109311576,50,-,CGTGTGACCTTGCTGCTTTACATCATTAAAATTTCCCATTACTGGAATGG,Distal Intergenic,8,109340691,109340864,174,2,Gm1943-201,29289,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,28,384864,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24486,cg25722551,-0.00000448,0.00000139,-3.230335066,0.001369231,loss,ns,0.00000234,0.00000236,0.992998486,0.321485137,pos,ns,-0.001045418,0.000690363,-1.51430063,0.130968496,neg,ns,0.882833161,0.0000334,0.0000237,1.406294295,0.160638346,pos,ns,0.045902067,Irf2bp2,Irf2bp2_Exon,8,126593344,126593393,126593392,126593393,50,-,GTCCCAGATCATGGCCCAGGGCATGCGGGGCAGGTCACACAGGTAGCACG,Promoter (<=1kb),8,126588296,126593986,5691,2,Irf2bp2-201,593,Irf2bp2-201,Irf2bp2,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,270110,ENSMUSG00000051495,conserved gene and region,8,126592307,126594226,1920,*,1920,281,0.7546875,1.029799125,0.146354167,4.38E-265,CpGisland,TRUE,U1,Pr-A
17871,cg25441591,-0.000110265,0.0000141,-7.847850535,6.93E-14,loss,yes,0.0000237,0.0000239,0.992952755,0.321507387,pos,ns,0.008289875,0.006993022,1.185449595,0.236747631,pos,ns,0.625714359,-0.000482572,0.000240489,-2.006625003,0.045657729,neg,ns,0.718430901,Phf21a,Phf21a_Intron,2,92198349,92198398,92198349,92198350,50,-,CGTAACATTGTGGAGTATGCAGCATGCATGTTAAGTACAAGTGGTTGTAT,"Intron (Phf21a-201/Phf21a, intron 1 of 15)",2,92093117,92364666,271550,1,Phf21a-201,105232,Phf21a-201;Phf21a-202;Phf21a-204;Phf21a-209;Phf21a-208;Phf21a-207;Phf21a-212;Phf21a-219;Phf21a-206;Phf21a-216;Phf21a-221;Phf21a-220;Phf21a-210;Phf21a-205;Phf21a-211,Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,21,192285,ENSMUSG00000058318,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3140,cg07539395,0.0000239,0.00000925,2.583957372,0.010224711,gain,ns,0.0000156,0.0000157,0.992911442,0.321527489,pos,ns,0.008116012,0.004605649,1.762186483,0.0790233,pos,ns,1.102244841,-0.000150117,0.000158388,-0.94778095,0.343979208,neg,ns,0.373432868,Gm11879,Gm11879_Intergenic_downstream,4,22970651,22970700,22970699,22970700,50,-,GTCAGGGACCTCAGGATAATCATAAACTGCCTGGACTCCCATTAATCTCG,Distal Intergenic,4,22704057,22704758,702,1,Gm11879-201,266643,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,19,19,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14416,cg00101675,-0.0000174,0.00000525,-3.317269594,0.001017147,loss,ns,-0.00000885,0.00000891,-0.992886358,0.321539695,neg,ns,0.000121528,0.002611462,0.046536471,0.962912631,pos,ns,0.016413117,-0.00000543,0.0000898,-0.060517694,0.95178232,neg,ns,0.890300189,Ppp2r5e,Ppp2r5e_fiveUTR,12,75515719,75515768,75515719,75515720,50,+,CGTGTCCATGAAGTCAAAAATGACACAGCACTGCTGAAGTTTCTTTAGGA,5' UTR,12,75450881,75596200,145320,2,Ppp2r5e-201,80432,Ppp2r5e-201;Ppp2r5e-205;Ppp2r5e-202;Ppp2r5e-203;Ppp2r5e-204,Ppp2r5e;Ppp2r5e;Ppp2r5e;Ppp2r5e;Ppp2r5e,0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,7,26932,ENSMUSG00000021051,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17207,cg02389140,-0.00000536,0.00000312,-1.717485266,0.086889217,loss,ns,-0.00000526,0.0000053,-0.992878958,0.321543296,neg,ns,0.001243677,0.001552053,0.80131106,0.423565342,pos,ns,0.373079583,-0.000189791,0.0000534,-3.555812666,0.000435621,neg,ns,0.928917852,Nrxn3,Nrxn3_fiveUTR,12,89187185,89187234,89187233,89187234,50,-,CCTGGCTCTGAAGGATGGTGCGGTCTCCTTGGTCATTAACCTGGGGTCCG,5' UTR,12,88722876,89261571,538696,1,Nrxn3-209,464309,Nrxn3-209;Nrxn3-213;Nrxn3-208;Nrxn3-205;Nrxn3-211;Nrxn3-201,Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3,0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,39,18191,ENSMUSG00000066392,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
640,cg23869573,-0.0000227,0.00000551,-4.121285542,0.0000484,loss,ns,0.0000093,0.00000937,0.992833799,0.321565271,pos,ns,-0.001515856,0.002744425,-0.552339987,0.581113442,neg,ns,0.235739079,-0.0000795,0.0000944,-0.841887525,0.400499908,neg,ns,0.911939777,Rbfox1,Rbfox1_Exon,16,7409733,7409782,7409781,7409782,50,-,GCTGATGATGTGGGTCTCGTTCTTTCTTCATTGCAGGCTAGTATATACCG,"Exon (Rbfox1-201/Rbfox1, exon 15 of 15)",16,6349138,7411526,1062389,1,Rbfox1-201,1060595,Rbfox1-201;Rbfox1-202;Rbfox1-203;Rbfox1-208;Rbfox1-207;Rbfox1-206,Rbfox1;Rbfox1;Rbfox1;Rbfox1;Rbfox1;Rbfox1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,35,268859,ENSMUSG00000008658,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14085,cg11452997,0.0000651,0.00000487,13.35968612,1.83E-32,gain,yes,0.00000822,0.00000828,0.992767704,0.321597435,pos,ns,0.007143729,0.002425689,2.945030213,0.003473616,pos,ns,2.459218252,0.00000967,0.0000834,0.115963823,0.907756297,pos,ns,0.11522254,Evx2,Evx2_threeUTR,2,74654182,74654231,74654182,74654183,50,-,CGTCTCTCCTAATGACTTCCCTTAGCGGGTTGTTAGTACTTGACAGCAGG,3' UTR,2,74652991,74659557,6567,2,Evx2-201,5326,Evx2-201;Evx2-202,Evx2;Evx2,0;5188,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,8,35,14029,ENSMUSG00000001815,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
18146,cg15513402,0.00000015,0.00000844,0.017723599,0.985870756,gain,ns,-0.0000142,0.0000143,-0.992707434,0.321626767,neg,ns,-0.012076494,0.004200487,-2.875022281,0.004319535,neg,ns,2.364563051,0.000352681,0.000144454,2.441469237,0.015186616,pos,ns,0.112241595,Hsd17b12,Hsd17b12_Intron,2,94241912,94241961,94241912,94241913,50,+,CGTGACTACAGGCGCTGCGTAAAGAGAAAAACTCCCCCAGAGCACTAAAT,"Intron (Mir670hg-205/Mir670hg-205, intron 2 of 5)",2,94032689,94157964,125276,2,Hsd17b12-201,-83948,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,14,19,56348,ENSMUSG00000027195,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9275,cg16765884,0.0000016,0.0000012,1.332166656,0.183783935,gain,ns,-0.00000202,0.00000204,-0.99252736,0.321714414,neg,ns,0.000118354,0.000597425,0.198107399,0.843090884,pos,ns,0.074125607,-0.00000518,0.0000205,-0.252120216,0.801115216,neg,ns,0.970897583,Foxp4,Foxp4_Intron,17,47872643,47872692,47872691,47872692,50,+,GAAGCCTGATTCGTGATGAGAGACTAATTCGTTACGCTGAAACATTAACG,"Intron (Foxp4-204/Foxp4, intron 13 of 16)",17,47867133,47924645,57513,2,Foxp4-204,51953,Foxp4-204;Foxp4-203;Foxp4-201;Foxp4-202,Foxp4;Foxp4;Foxp4;Foxp4,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,25,74123,ENSMUSG00000023991,conserved gene and region,17,47872440,47872721,282,*,282,26,0.563829787,1.163809524,0.092198582,3.73E-19,CpGisland,TRUE,U10,Tr-S
21788,cg01743293,0.0000028,0.00000386,0.726713981,0.467949572,gain,ns,0.0000065,0.00000655,0.992358756,0.321796493,pos,ns,0.005123047,0.001920204,2.667970182,0.008032322,pos,ns,2.095158909,-0.000166715,0.000066,-2.524625076,0.012081002,neg,ns,0.922043003,Lmo1,Lmo1_Intron,7,109161740,109161789,109161740,109161741,50,-,CGTCAGACTGTAATATTTTGCTAAACCAAAGTACAGACACAGACAAAGAT,"Intron (Lmo1-201/Lmo1, intron 1 of 3)",7,109138572,109170519,31948,2,Lmo1-201,8730,Lmo1-201;Lmo1-202;Lmo1-203,Lmo1;Lmo1;Lmo1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,66,109594,ENSMUSG00000036111,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8181,cg10372263,0.0000184,0.00000938,1.959650279,0.050932451,gain,ns,0.0000158,0.0000159,0.99228582,0.321832003,pos,ns,0.007052765,0.004668233,1.510799826,0.131858094,pos,ns,0.879893205,0.000074,0.00016054,0.460668531,0.64535943,pos,ns,0.366157393,Pax2,Pax2_Intron,19,44834521,44834570,44834569,44834570,50,-,GTTGAGCTCAGAAGCTCATTATCCTGCTGCACGCATGCTTTCCCTCCTCG,"Intron (Pax2-203/Pax2, intron 8 of 9)",19,44756045,44837851,81807,1,Pax2-203,78476,Pax2-203;Pax2-201,Pax2;Pax2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,35,166,18504,ENSMUSG00000004231,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
13488,cg18489821,0.000013,0.00000365,3.546668392,0.000450406,gain,ns,-0.00000616,0.0000062,-0.992142731,0.321901677,neg,ns,0.001307574,0.001817819,0.719309391,0.472492201,pos,ns,0.325605356,-0.0000879,0.0000625,-1.406555192,0.160560985,neg,ns,0.934592918,Dlgap1,Dlgap1_Exon,17,70786844,70786893,70786892,70786893,50,-,ACTTCCATGATAATCTGGAAAATTCTCTGGAATCTATAGAGGACAATTCG,"Exon (Dlgap1-207/Dlgap1, exon 11 of 14)",17,69969073,70821413,852341,1,Dlgap1-207,817771,Dlgap1-207;Dlgap1-201;Dlgap1-210;Dlgap1-214;Dlgap1-208;Dlgap1-218;Dlgap1-219;Dlgap1-206;Dlgap1-204;Dlgap1-211;Dlgap1-209;Dlgap1-202,Dlgap1;Dlgap1;Dlgap1;Dlgap1;Dlgap1;Dlgap1;Dlgap1;Dlgap1;Dlgap1;Dlgap1;Dlgap1;Dlgap1,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,224997,ENSMUSG00000003279,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6354,cg18042159,-0.00000477,0.00000176,-2.71699307,0.006957946,loss,ns,-0.00000296,0.00000298,-0.991845137,0.322046614,neg,ns,-0.00021978,0.000873822,-0.251515371,0.801582328,neg,ns,0.096051866,0.0000264,0.0000301,0.879000165,0.380082007,pos,ns,0.958085921,Pknox2,Pknox2_Intron,9,36974021,36974070,36974021,36974022,50,-,CGATGAATCTTGAAATAACGGTGTCAACCTGTCACTGATTTCATGTGACT,"Intron (Pknox2-207/Pknox2, intron 1 of 10)",9,36890982,37083309,192328,2,Pknox2-207,109239,Pknox2-207;Pknox2-201;Pknox2-202;Pknox2-203;Pknox2-206;Pknox2-204;Pknox2-205;Pknox2-208;Pknox2-210;Pknox2-209;Pknox2-212,Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,47,208076,ENSMUSG00000035934,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6357,cg03172082,0.00000941,0.0000057,1.652525209,0.099439938,gain,ns,0.0000096,0.00000968,0.991838062,0.32205006,pos,ns,-0.001848912,0.002835335,-0.652096234,0.514822291,neg,ns,0.288342657,-0.0000308,0.0000975,-0.315495553,0.752597711,neg,ns,0.784984782,Tshz3,Tshz3_Intergenic_downstream,7,36978048,36978097,36978048,36978049,50,+,CGGCAGACATGTGAGGAGCTGTCTGCCTCTTCAATCTCACTGACAGGGCA,Distal Intergenic,7,36698217,36702113,3897,1,Tshz3-202,279831,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,21,58,243931,ENSMUSG00000021217,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
965,cg17068784,-0.0000446,0.000013,-3.438203947,0.00066565,loss,ns,-0.0000219,0.000022,-0.991816872,0.322060382,neg,ns,-0.018314622,0.00645905,-2.835497677,0.004876204,neg,ns,2.31191815,0.000119541,0.000222126,0.538166318,0.590848404,pos,ns,0.693826748,Gm5182,Gm5182_Intron,12,10179927,10179976,10179975,10179976,50,-,ACAATTAAAGATATTTACCAGAGAAATTTGAGCCCCATTACATGCTGGCG,"Intron (Gm48791-201/Gm48791-201, intron 2 of 3)",12,10152142,10158233,6092,1,Gm5182-201,27834,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,4,382567,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1801,cg27589919,-0.0000187,0.00000285,-6.553899204,2.34E-10,loss,yes,0.00000481,0.00000485,0.991717615,0.322108734,pos,ns,0.000366545,0.001419533,0.258214864,0.796412431,pos,ns,0.09886197,-0.0000711,0.0000488,-1.456111531,0.146373804,neg,ns,0.119975177,Dll1,Dll1_Promoter,17,15376107,15376156,15376155,15376156,50,-,TGGATCGCCAAATGGTCAGTGAGCTGTAAAATGTGCAACCCTCCTCCCCG,Promoter (<=1kb),17,15374794,15376872,2079,2,Dll1-205,716,Dll1-201;Dll1-206;Dll1-203;Dll1-202;Dll1-205,Dll1;Dll1;Dll1;Dll1;Dll1,-131;-4276;-2035;-1007;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,9,9,13388,ENSMUSG00000014773,conserved gene but different region,17,15376155,15376502,348,*,348,34,0.683908046,0.896363636,0.097701149,8.61E-26,CpGisland,TRUE,NA,NRS
18430,cg12086362,-0.0000127,0.0000115,-1.103878453,0.270501986,loss,ns,0.0000194,0.0000196,0.991655578,0.322138957,pos,ns,0.008645326,0.005734318,1.507646872,0.132663321,pos,ns,0.877249136,-0.000516658,0.000197203,-2.619932765,0.009227596,neg,ns,0.697401861,St8sia4,St8sia4_threeUTR,1,95627501,95627550,95627549,95627550,50,-,ACTTACCCTCTGACAGCATGAATAAGTCTCAATGACGGATAGGCAGTTCG,3' UTR,1,95587682,95667571,79890,2,St8sia4-201,40021,St8sia4-201;St8sia4-204,St8sia4;St8sia4,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,3,20452,ENSMUSG00000040710,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
809,cg19643902,0.0000842,0.0000239,3.515604564,0.000504222,gain,ns,-0.0000403,0.0000407,-0.991627702,0.322152539,neg,ns,0.030025182,0.011919402,2.519017544,0.012271094,pos,ns,1.911116715,-0.00082257,0.000409907,-2.006721453,0.045647393,neg,ns,0.514730649,Chd7,Chd7_Exon,4,8825474,8825523,8825522,8825523,50,-,CTTTTTAATCCAGATTATGTGGAGGTTGACCGGATAATGGACTTTGCACG,"Exon (Chd7-201/Chd7, exon 9 of 38)",4,8690921,8866810,175890,1,Chd7-201,134553,Chd7-201;Chd7-202;Chd7-206,Chd7;Chd7;Chd7,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,16,320790,ENSMUSG00000041235,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
22893,cg09191938,0.0000285,0.00001,2.841849331,0.00478256,gain,ns,0.0000169,0.0000171,0.991572656,0.322179358,pos,ns,0.019535714,0.004996516,3.909867266,0.000113475,pos,ns,3.945099272,-0.000491729,0.00017183,-2.861722352,0.004500035,neg,ns,0.711051616,Meis2,Meis2_Promoter,2,116069763,116069812,116069763,116069764,50,+,CGGTGTCAAATTGGGGTCATTTTGGGGTTAGAGTTCTCAGTGTCCGAGAG,Promoter (3-4kb),2,115863064,116065839,202776,2,Meis2-206,-3924,Meis2-201;Meis2-203;Meis2-205;Meis2-206,Meis2;Meis2;Meis2;Meis2,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,6,97,17536,ENSMUSG00000027210,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10540,cg02237133,-0.00000174,0.00000165,-1.055056974,0.292220839,loss,ns,0.00000278,0.0000028,0.991444935,0.322241592,pos,ns,0.00189714,0.000821473,2.309436204,0.021576407,pos,ns,1.666020868,-0.0000498,0.0000283,-1.761828527,0.079083895,neg,ns,0.956203463,Npas3,Npas3_threeUTR,12,54072083,54072132,54072131,54072132,50,-,ATACATGTCACATACATGGTTGTCTTTATGTAACTTAATTTTTTCATCCG,3' UTR,12,53248677,54072175,823499,1,Npas3-201,823406,Npas3-204;Npas3-201;Npas3-203,Npas3;Npas3;Npas3,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,103,27386,ENSMUSG00000021010,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5474,cg27632159,0.0000118,0.00000899,1.315226531,0.189405771,gain,ns,0.0000151,0.0000153,0.991399499,0.322263733,pos,ns,0.013624543,0.004473223,3.045800119,0.002519878,pos,ns,2.598620535,-0.000519645,0.000153834,-3.377964663,0.000823435,neg,ns,0.868942377,Fxr1,Fxr1_threeUTR,3,34046455,34046504,34046503,34046504,50,+,GCTGCTTGTGACGCTACTTACAATGAAATAGTCACATTTGAACGACTTCG,3' UTR,3,34019943,34069342,49400,1,Fxr1-201,26512,Fxr1-201;Fxr1-202;Fxr1-207;Fxr1-206;Fxr1-204;Fxr1-208;Fxr1-203;Fxr1-205;Fxr1-209,Fxr1;Fxr1;Fxr1;Fxr1;Fxr1;Fxr1;Fxr1;Fxr1;Fxr1,0;0;0;0;0;0;6924;0;-128,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,4,14359,ENSMUSG00000027680,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24090,cg24255409,0.0000553,0.00000541,10.2195965,2.55E-21,gain,yes,-0.00000911,0.00000919,-0.990943745,0.32248588,neg,ns,0.006519829,0.002692303,2.421655149,0.016023574,pos,ns,1.795240615,-0.00019787,0.0000926,-2.13709565,0.033372577,neg,ns,0.134635753,Zic5,Zic5_Exon,14,122464774,122464823,122464774,122464775,50,-,CGGAAAGGTCCCTCCGGAGGACGAAGTCCCTGCTGTGGCCTTTGCCGCTG,Promoter (<=1kb),14,122456795,122465677,8883,2,Zic5-201,854,Zic5-201;Zic5-202,Zic5;Zic5,0;-4753,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,26,65100,ENSMUSG00000041703,conserved gene and region,14,122464227,122464884,658,*,658,90,0.767477204,0.947580645,0.136778116,3.84E-82,CpGisland,TRUE,U3,Pr-B
13776,cg00250171,0.000000319,0.00000345,0.092327085,0.926497805,gain,ns,0.00000581,0.00000586,0.990943161,0.322486165,pos,ns,0.004130122,0.001718152,2.403815813,0.016811708,pos,ns,1.77438816,-0.000138363,0.0000591,-2.34167951,0.019830178,neg,ns,0.509855824,Irx2,Irx2_Intergenic_upstream,13,72558339,72558388,72558339,72558340,50,-,CGAGAGATGGCATGCCATCAGTGATAGACAAATATCACAGTTAAGCAAAG,Distal Intergenic,13,72628820,72634198,5379,1,Irx2-201,-70481,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,3,16372,ENSMUSG00000001504,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21985,cg11448896,0.0000318,0.00000328,9.674421961,1.62E-19,gain,yes,-0.00000553,0.00000558,-0.990936,0.322489656,neg,ns,-0.000958958,0.001633561,-0.587035606,0.557607073,neg,ns,0.253671726,0.000113003,0.0000562,2.011519525,0.045135738,pos,ns,0.085810962,Dmrta2,Dmrta2_Promoter,4,109977966,109978015,109977966,109977967,50,-,CGCCACATTGTTGTCCAATTCTGTCTAATGGAGCCCTAAGGACCAACAAT,Promoter (<=1kb),4,109978053,109983687,5635,1,Dmrta2-201,-87,Dmrta2-201,Dmrta2,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,7,13,242620,ENSMUSG00000047143,conserved gene and region,4,109977517,109977967,451,*,451,38,0.654101996,0.797709924,0.084257206,3.17E-26,CpGisland,TRUE,U3,Pr-B
6514,cg20015011,-0.000000483,0.0000121,-0.039799599,0.968278515,loss,ns,-0.0000204,0.0000206,-0.990788009,0.322561813,neg,ns,0.016388724,0.006040705,2.713047992,0.007039344,pos,ns,2.152467835,-0.000515704,0.000207739,-2.482454541,0.013577158,neg,ns,0.216015269,Siae,Siae_Intron,9,37568747,37568796,37568747,37568748,50,-,CGTCTGCTACACAATCTCTCTGAGGTTAAATATTAATTAAGAGCAGAATG,"Intron (Siae-202/Siae, intron 2 of 10)",9,37555698,37646987,91290,1,Siae-202,13049,Siae-202,Siae,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,5,22619,ENSMUSG00000001942,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
1726,cg11682341,-0.0000101,0.00000321,-3.131313313,0.001906201,loss,ns,-0.0000054,0.00000545,-0.990690889,0.322609173,neg,ns,-0.003237539,0.001597837,-2.026200757,0.043600246,neg,ns,1.360511058,0.00013297,0.0000549,2.419853364,0.016101666,pos,ns,0.932538698,Taf4b,Taf4b_Intron,18,14844867,14844916,14844867,14844868,50,-,CGGTGCTGGGATTTAGTTTTAAATGGAAAATGCCTCTGGCTTTTAATTTT,"Intron (Taf4b-201/Taf4b, intron 13 of 14)",18,14783245,14900359,117115,1,Taf4b-201,61622,Taf4b-201;Taf4b-202,Taf4b;Taf4b,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,3,72504,ENSMUSG00000054321,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22064,cg15187499,0.00000467,0.00000141,3.314530252,0.001026817,gain,ns,-0.00000237,0.0000024,-0.990638957,0.322634498,neg,ns,0.000897092,0.000701962,1.277976719,0.202213743,pos,ns,0.694189331,-0.0000237,0.0000241,-0.983548599,0.326104503,neg,ns,0.968244684,Dync1h1,Dync1h1_Exon,12,110632702,110632751,110632702,110632703,50,+,CGCCAAATCTTTTGAATGGCTCAGCCAGATGCGATTTTACTTTGACCCTA,"Exon (Dync1h1-201/Dync1h1, exon 27 of 77)",12,110601452,110666945,65494,1,Dync1h1-201,31250,Dync1h1-201,Dync1h1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,13424,ENSMUSG00000018707,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5383,cg04675539,-0.0000625,0.00000893,-6.999052511,1.60E-11,loss,yes,0.000015,0.0000152,0.990586679,0.322659994,pos,ns,-0.010392352,0.00444398,-2.338523622,0.019995441,neg,ns,1.699069009,0.000358002,0.000152828,2.342512656,0.01978675,pos,ns,0.714216892,Gm42965,Gm42965_Promoter,5,33692660,33692709,33692660,33692661,50,+,CGCACGAAAGAAAAACTTTGTTTTATTAAAGCAACATCAGGGCTGTGGCC,Promoter (9-10kb),5,33682725,33682974,250,2,Gm42965-201,-9686,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,2,,NA,mapped to different genes,5,33692519,33692665,147,*,147,13,0.673469388,0.781914894,0.088435374,1.53E-09,CpGisland,TRUE,NA,NRS
16891,cg08498445,-0.0000176,0.0000158,-1.113138904,0.266511166,loss,ns,-0.0000267,0.0000269,-0.990481994,0.322711053,neg,ns,-0.005971786,0.007886048,-0.757259659,0.449469503,neg,ns,0.34729977,-0.000283305,0.000271201,-1.044631711,0.297007107,neg,ns,0.809777675,1700113H08Rik,1700113H08Rik_Intron,10,87101666,87101715,87101714,87101715,50,-,TGTAATTAAGCCTCAAGATTTATGAATACAACAGGCCAGAACTTGATCCG,"Intron (1700113H08Rik-202/1700113H08Rik, intron 2 of 4)",10,87058045,87230589,172545,1,1700113H08Rik-202,43621,1700113H08Rik-202;1700113H08Rik-201,1700113H08Rik;1700113H08Rik,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,6,76640,ENSMUSG00000047129,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15152,cg19711579,0.0000449,0.00000308,14.5589627,5.98E-37,gain,yes,0.00000519,0.00000524,0.990408565,0.32274687,pos,ns,0.009633009,0.001534677,6.276894622,1.16E-09,pos,ns,8.934386266,-0.000126792,0.0000528,-2.402386179,0.016876324,neg,ns,0.071006706,Cerkl,Cerkl_Promoter,2,79456940,79456989,79456940,79456941,50,+,CGCTCCATTCCGGCCCCTTTGTGGCCAGAAGAAAGTGGCCCATCTGTCGC,Promoter (<=1kb),2,79338569,79456785,118217,2,Cerkl-210,-155,Cerkl-210;Neurod1-201,Cerkl;Neurod1,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,13,15,228094,ENSMUSG00000075256,mapped to different genes,2,79456843,79457022,180,*,180,14,0.622222222,0.830039526,0.077777778,1.72E-09,CpGisland,TRUE,NA,NRS
20679,cg18401084,-0.00000186,0.0000122,-0.15189966,0.879364884,loss,ns,0.0000206,0.0000208,0.990199124,0.322849045,pos,ns,0.003317503,0.006093583,0.544425619,0.586540008,pos,ns,0.231702359,-0.000177596,0.000209558,-0.847477319,0.397382941,neg,ns,0.629352014,Pou4f1,Pou4f1_Intron,14,104453328,104453377,104453328,104453329,50,+,CGGATTTATTAGACAAATAAGTAGCCCGGCTGATGCAAAACCCCCAGTGA,"Intron (D130079A08Rik-202/D130079A08Rik-202, intron 1 of 4)",14,104463973,104465365,1393,2,Pou4f1-202,11988,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,31,18996,ENSMUSG00000048349,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23556,cg17648878,0.000000895,0.00000143,0.625398698,0.532169528,gain,ns,-0.00000241,0.00000243,-0.990193654,0.322851714,neg,ns,0.000487932,0.000711924,0.685370428,0.493622376,pos,ns,0.306605162,-0.0000364,0.0000245,-1.485693023,0.138376561,neg,ns,0.963074158,Dyrk2,Dyrk2_Exon,10,118859970,118860019,118859970,118859971,50,-,CGGGGATAACCCTTGGAGCTCACAAAATTTTTGGCTCGTTTGGATGCATC,"Exon (Dyrk2-201/Dyrk2, exon 3 of 3)",10,118855603,118869149,13547,2,Dyrk2-201,9130,Dyrk2-201;Dyrk2-202;Dyrk2-203,Dyrk2;Dyrk2;Dyrk2,0;10190;8280,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,69181,ENSMUSG00000028630,conserved gene and region,10,118859848,118860007,160,*,160,10,0.58125,0.754716981,0.0625,0.00000493,CpGisland,TRUE,U10,Tr-S
27032,cg07682972,0.00000504,0.00000222,2.26818293,0.024005721,gain,ns,-0.00000373,0.00000377,-0.990164106,0.32286613,neg,ns,0.000744451,0.001104862,0.673794893,0.500943795,pos,ns,0.300210998,-0.000025,0.000038,-0.658414241,0.510760671,neg,ns,0.959725954,Dlgap4,Dlgap4_fiveUTR,2,156748064,156748113,156748064,156748065,50,-,CGGACCCAAAGCGATCGATGTGATGGCACCCTCCTCAGAGTAGGGAAAGC,5' UTR,2,156613705,156764361,150657,1,Dlgap4-205,134359,Dlgap4-205;Dlgap4-212;Dlgap4-206;Dlgap4-202;Dlgap4-210;Dlgap4-209;Dlgap4-204;Dlgap4-208;Dlgap4-211;Dlgap4-214;Dlgap4-213;Dlgap4-201;Dlgap4-203,Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,10,17,228836,ENSMUSG00000061689,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17281,cg25607768,0.00000928,0.0000028,3.311429521,0.001037867,gain,ns,0.00000471,0.00000476,0.989953922,0.322968693,pos,ns,0.004268253,0.00139432,3.06117203,0.00239766,pos,ns,2.620212415,-0.000106043,0.000048,-2.211515496,0.027729431,neg,ns,0.035483608,Tmem135,Tmem135_Promoter,7,89403538,89403587,89403586,89403587,50,+,TTTAGAAACCGTGTCCCCGAGACAGGAAGGGCGGCGGGCCGAGAAGCACG,Promoter (<=1kb),7,89156448,89404222,247775,2,Tmem135-203,635,Fzd4-201;Tmem135-203,Fzd4;Tmem135,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,2,3,72759,ENSMUSG00000039428,mapped to different genes,7,89403351,89403804,454,*,454,42,0.649779736,0.878143134,0.092511013,1.10E-30,CpGisland,TRUE,U1,Pr-A
3622,cg02106637,0.0000735,0.0000121,6.064309084,3.85E-09,gain,yes,-0.0000204,0.0000206,-0.989912468,0.322988923,neg,ns,0.027215704,0.006036023,4.508879788,0.00000925,pos,ns,5.03368049,-0.000658894,0.000207578,-3.174193979,0.001653418,neg,ns,0.359187291,BC005537,BC005537_Exon,13,24812694,24812743,24812742,24812743,50,-,CAGGAACAGCTCACCCACTGGGCAGTTGGCACCATAGAGGATCACCTCCG,"Exon (BC005537-201/BC005537, exon 5 of 5)",13,24801657,24816197,14541,1,BC005537-201,11037,BC005537-201;BC005537-202,BC005537;BC005537,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,Exon,4,4,79555,ENSMUSG00000019132,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19290,cg18418719,-0.000000271,0.000000351,-0.774063878,0.439482939,loss,ns,0.00000059,0.000000596,0.989865676,0.32301176,pos,ns,-0.000207179,0.000174494,-1.187316077,0.236011955,neg,ns,0.627065997,0.00000628,0.000006,1.046283798,0.296245137,pos,ns,0.991782129,Foxp1,Foxp1_threeUTR,6,98941019,98941068,98941067,98941068,50,+,TCATCGGGGCAGTATTTGCGAGGACGGCCTCGTTGAATATGGCGGCCACG,3' UTR,6,98925338,99266515,341178,2,Foxp1-206,325447,Foxp1-206;Foxp1-204;Foxp1-220;Foxp1-230;Foxp1-225;Foxp1-201;Foxp1-205;Foxp1-207;Foxp1-208;Foxp1-226;Foxp1-228;Foxp1-221;Foxp1-222;Foxp1-210,Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,9,87,108655,ENSMUSG00000030067,mapped to different genes,6,98940999,98941068,70,*,70,8,0.6,1.281464531,0.114285714,0.000000774,CpGisland,TRUE,U10,Tr-S
21711,cg11268859,-0.00000178,0.00000111,-1.593352963,0.112100093,loss,ns,0.00000187,0.00000189,0.989841053,0.323023778,pos,ns,0.000616004,0.000554702,1.110513171,0.267638576,pos,ns,0.572451289,0.00000238,0.0000191,0.124828477,0.900740249,pos,ns,0.035465395,Prpf38b,Prpf38b_Exon,3,108911159,108911208,108911159,108911160,50,-,CGTACCTTAAAGTAGATCTCGTCCACCACCTCGTGGTAGGTCTTGAGCTC,Promoter (<=1kb),3,108902805,108911696,8892,2,Prpf38b-204,488,Prpf38b-204;Prpf38b-201;Prpf38b-208;Prpf38b-206;Prpf38b-205;Prpf38b-207,Prpf38b;Prpf38b;Prpf38b;Prpf38b;Prpf38b;Prpf38b,0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,13,66921,ENSMUSG00000027881,conserved gene but different region,3,108910989,108911237,249,*,249,19,0.614457831,0.838532435,0.076305221,1.44E-12,CpGisland,TRUE,U1,Pr-A
2611,cg14956305,0.00000517,0.00000457,1.132835693,0.258158665,gain,ns,0.00000768,0.00000776,0.989826728,0.32303077,pos,ns,0.002696874,0.002272233,1.186883024,0.236182499,pos,ns,0.626752287,-0.000023,0.0000781,-0.294503876,0.768570013,neg,ns,0.921118219,Zswim8,Zswim8_threeUTR,14,20711490,20711539,20711538,20711539,50,-,CAGATGGTCCCTCCTAAAGGGGCCTACAACGTGGCTGTGATGTTTGACCG,3' UTR,14,20707552,20723619,16068,1,Zswim8-201,3938,Zswim8-201;Zswim8-208;Zswim8-204;Zswim8-206;Zswim8-205;Zswim8-211;Zswim8-212;Zswim8-203;Zswim8-213,Zswim8;Zswim8;Zswim8;Zswim8;Zswim8;Zswim8;Zswim8;Zswim8;Zswim8,0;0;0;3619;0;0;-560;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,14,268721,ENSMUSG00000021819,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5844,cg04175509,-0.00000943,0.00000211,-4.474549351,0.0000108,loss,ns,-0.00000354,0.00000358,-0.989721948,0.323081913,neg,ns,-0.002045639,0.001048882,-1.950303133,0.052041024,neg,ns,1.283654165,0.00000902,0.0000361,0.250145725,0.802640347,pos,ns,0.944643656,Mylk,Mylk_Exon,16,34979254,34979303,34979254,34979255,50,+,CGCCACAGACATGTGGAGCATCGGGGTCATCTGCTACATCCTGTGAGTCC,"Exon (Mylk-201/Mylk, exon 27 of 32)",16,34784921,35002420,217500,1,Mylk-201,194333,Mylk-201;Mylk-207,Mylk;Mylk,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,7,107589,ENSMUSG00000022836,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19376,cg09160780,-0.00000732,0.00000416,-1.76019854,0.079360301,loss,ns,0.00000699,0.00000707,0.989494862,0.323192772,pos,ns,0.000631581,0.00207001,0.305109961,0.760487157,pos,ns,0.118908116,-0.00015978,0.0000712,-2.244492965,0.025505846,neg,ns,0.867629212,Efnb1,Efnb1_Exon,X,99145311,99145360,99145359,99145360,50,-,TTGGTGATCTATCCGAAAATTGGAGACAAGCTGGACATCATCTGCCCCCG,"Exon (Efnb1-201/Efnb1, exon 2 of 5)",20,99136130,99148991,12862,1,Efnb1-201,9181,Efnb1-201;Efnb1-202,Efnb1;Efnb1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,14,13641,ENSMUSG00000031217,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19807,cg17052483,0.000000397,0.00000665,0.059695805,0.952436377,gain,ns,-0.0000112,0.0000113,-0.989409839,0.323234285,neg,ns,0.004605285,0.003309592,1.391496043,0.165072759,pos,ns,0.782324591,-0.000175227,0.000113817,-1.539554547,0.124689058,neg,ns,0.862261033,Pdzrn3,Pdzrn3_Intron,6,101175139,101175188,101175139,101175140,50,+,CGATCCATTTTTGCAGCCAAATTTGTTTTGAATTACCTTGTGCACATAAC,"Intron (Gm43948-201/Gm43948-201, intron 3 of 3)",6,101149609,101377897,228289,2,Pdzrn3-201,202709,Pdzrn3-201;Pdzrn3-205;Pdzrn3-202;Pdzrn3-203;Pdzrn3-204,Pdzrn3;Pdzrn3;Pdzrn3;Pdzrn3;Pdzrn3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,4,55983,ENSMUSG00000035357,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18165,cg13725272,0.00000443,0.00000242,1.833366027,0.067706876,gain,ns,0.00000406,0.0000041,0.989376988,0.323250326,pos,ns,0.001796874,0.001202443,1.494353326,0.13610047,pos,ns,0.866140374,-0.00000973,0.0000414,-0.235189536,0.81421691,neg,ns,0.064570786,Magi1,Magi1_fiveUTR,6,94283822,94283871,94283822,94283823,50,-,CGGCCCCTTTAAGCAGATACAAAGGCTCGGCTTGTTTTGTTACAGTTCAT,Promoter (<=1kb),6,93675455,94283917,608463,2,Magi1-208,46,Magi1-201;Magi1-202;Magi1-208;Magi1-205;Magi1-204,Magi1;Magi1;Magi1;Magi1;Magi1,0;0;0;0;-797,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,8,18,14924,ENSMUSG00000045095,conserved gene but different region,6,94283398,94284030,633,*,633,85,0.710900474,1.066945607,0.134281201,8.37E-77,CpGisland,TRUE,U1,Pr-A
27223,cg12717057,-0.00000587,0.00000677,-0.866865378,0.386686243,loss,ns,-0.0000114,0.0000115,-0.989302337,0.323286779,neg,ns,-0.003229733,0.0033705,-0.958235706,0.33869064,neg,ns,0.470196806,-0.0000322,0.000115911,-0.278038898,0.781167848,neg,ns,0.921325287,Chd6,Chd6_Exon,2,161008488,161008537,161008488,161008489,50,+,CGGTCGATGGCTGCCTGGCGCAGGTTTCCCCGTACTCGCCCATCAATTCG,Promoter (<=1kb),2,160991818,161008493,16676,2,Chd6-209,0,Chd6-201;Chd6-204;Chd6-209;Chd6-207,Chd6;Chd6;Chd6;Chd6,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,8,71389,ENSMUSG00000057133,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8756,cg13571461,-0.0000494,0.00000905,-5.458679804,9.84E-08,loss,yes,-0.0000152,0.0000154,-0.989216224,0.323328832,neg,ns,-0.01345491,0.004501852,-2.988749658,0.00302523,neg,ns,2.519241666,0.000101601,0.000154818,0.65626136,0.512142788,pos,ns,0.891845042,Gm13478,Gm13478_Intergenic_downstream,2,45715756,45715805,45715756,45715757,50,+,CGGAAATTAGGGGAAGTAATTAATTTTTTATTATGTGTCTCAATATTTTT,Distal Intergenic,2,45647191,45647603,413,1,Gm13478-201,68565,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,10,100042661,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4565,cg15804503,0.00000806,0.00000285,2.832593024,0.00491958,gain,ns,-0.00000478,0.00000484,-0.988932761,0.323467287,neg,ns,0.004557897,0.001416866,3.216885203,0.001432859,pos,ns,2.843796451,-0.000167495,0.0000487,-3.437484868,0.000667355,neg,ns,0.068848958,Mdga1,Mdga1_Intergenic_downstream,17,29795612,29795661,29795612,29795613,50,+,CGTGGGGACTCTTGCTGGGGAGTTAATCAAAGTGTCTGCAACTACTCATG,Distal Intergenic,17,29832264,29835358,3095,2,Mdga1-207,39697,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,4,74762,ENSMUSG00000043557,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1825,cg09183246,0.00000256,0.00000716,0.357732437,0.720786996,gain,ns,-0.000012,0.0000122,-0.988930967,0.323468164,neg,ns,-0.01261939,0.003562194,-3.542589078,0.000457153,neg,ns,3.339938681,0.000282595,0.000122504,2.306831791,0.021723158,pos,ns,0.831990136,Foxp2,Foxp2_Exon,6,15411786,15411835,15411786,15411787,50,-,CGGGAGTGAGGGCCATGGCTACTCAGCTGGAACTAAAAGAAAGTAAAGTG,"Exon (Foxp2-213/Foxp2, exon 15 of 15)",6,14901349,15441977,540629,1,Foxp2-207,510437,Foxp2-207;Foxp2-213;Foxp2-205;Foxp2-204;Foxp2-201;Foxp2-206,Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,65,114142,ENSMUSG00000029563,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4215,cg00786827,-0.000307328,0.0000213,-14.44759345,1.57E-36,loss,yes,0.0000357,0.0000361,0.988872829,0.323496566,pos,ns,0.038947351,0.010587257,3.678700821,0.000276312,pos,ns,3.558600323,-0.002050624,0.000364095,-5.6321136,3.99E-08,neg,yes,0.639089959,Rxra,Rxra_Promoter,2,27672310,27672359,27672358,27672359,50,-,ATTACGGTTCATATCATGTCTGTCAAATAAATATTATGAATCATTTCCCG,Promoter (4-5kb),2,27676440,27741898,65459,1,Rxra-204,-4130,Rxra-204;Rxra-201;Rxra-206,Rxra;Rxra;Rxra,0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,6,20181,ENSMUSG00000015846,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
6420,cg05713619,-0.00000612,0.0000106,-0.580500402,0.561998948,loss,ns,0.0000177,0.0000179,0.988848567,0.323508419,pos,ns,-0.004059526,0.005250862,-0.773116138,0.440042743,neg,ns,0.356505137,0.000098,0.000180577,0.542861429,0.587615298,pos,ns,0.748891013,Gm37013,Gm37013_threeUTR,18,37185463,37185512,37185511,37185512,50,+,GGCTTGTTTTCAGAACCTAAAAAGCAGACCCAAGTTTCCTTTCTCCTCCG,3' UTR,18,36969916,37833296,863381,1,Gm37013-201,215547,Gm37013-201;Gm37388-201;Gm42416-201;Pcdha1-202;Pcdha1-201;Pcdha11-201;Pcdha11-202;Pcdha11-203;Pcdha11-204;Pcdha12-201;Pcdha2-201;Pcdha2-202;Pcdha3-201;Pcdha4-202;Pcdha4-201;Pcdha5-201;Pcdha6-202;Pcdha6-201;Pcdha6-203;Pcdha7-201;Pcdha8-201;Pcdha9-201;Pcdhac1-201;Pcdhac2-201,Gm37013;Gm37388;Gm42416;Pcdha1;Pcdha1;Pcdha11;Pcdha11;Pcdha11;Pcdha11;Pcdha12;Pcdha2;Pcdha2;Pcdha3;Pcdha4;Pcdha4;Pcdha5;Pcdha6;Pcdha6;Pcdha6;Pcdha7;Pcdha8;Pcdha9;Pcdhac1;Pcdhac2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,14,100384868,ENSMUSG00000103458,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20804,cg16018837,0.0000038,0.00000223,1.699263914,0.090272654,gain,ns,-0.00000375,0.0000038,-0.988792273,0.323535922,neg,ns,0.000854551,0.001112138,0.768385663,0.442843041,pos,ns,0.353750175,-0.0000441,0.0000382,-1.15367081,0.249523836,neg,ns,0.927942869,Fam160a2,Fam160a2_threeUTR,7,105381392,105381441,105381392,105381393,50,-,CGCACACCTGCAGCAGGGACTTGACACTGGGCTGGAAGACCATGTTGGTG,3' UTR,7,105371211,105400054,28844,2,Fam160a2-208,18613,Fam160a2-208;Fam160a2-213;Fam160a2-206;Fam160a2-201;Fam160a2-203;Fam160a2-202;Fam160a2-204;Fam160a2-210;Fam160a2-207;Fam160a2-211;Fam160a2-212;Fam160a2-205;Gm5901-203;Gm5901-201;Gm5901-202,Fam160a2;Fam160a2;Fam160a2;Fam160a2;Fam160a2;Fam160a2;Fam160a2;Fam160a2;Fam160a2;Fam160a2;Fam160a2;Fam160a2;Gm5901;Gm5901;Gm5901,0;0;0;0;0;0;0;0;0;0;8073;7670;6354;6342;3569,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,5,5,74349,ENSMUSG00000044465,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3517,cg02284825,0.000109468,0.0000148,7.386154251,1.41E-12,gain,yes,-0.0000249,0.0000252,-0.988770009,0.3235468,neg,ns,0.026473838,0.007376418,3.588982794,0.000385724,pos,ns,3.413723747,-0.000808827,0.000253674,-3.188444585,0.001576524,neg,ns,0.20009197,Bcl11a,Bcl11a_Intergenic_downstream,11,24286879,24286928,24286927,24286928,50,+,GAAAGATGGTCTAACAGGGCACACTGCCTCCTCTCTTTGTGACATCATCG,Distal Intergenic,11,24142379,24163291,20913,1,Bcl11a-206,144500,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,15,98,14025,ENSMUSG00000000861,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25204,cg24057519,-0.0000264,0.00000782,-3.374494783,0.00083351,loss,ns,0.0000131,0.0000133,0.988682509,0.323589553,pos,ns,-0.004409354,0.003889905,-1.13353755,0.257864442,neg,ns,0.58860854,0.000116892,0.000133774,0.873805613,0.382900519,pos,ns,0.671320469,Arid1a,Arid1a_Exon,4,133691143,133691192,133691191,133691192,50,-,GGCAGATTTGTCATGCCCATGGCCTTCTCCTCAGTGAAGGCCAGATAACG,"Exon (Arid1a-202/Arid1a, exon 11 of 20)",4,133679008,133753611,74604,2,Arid1a-202,62419,Arid1a-202;Arid1a-205;Arid1a-201;Arid1a-203,Arid1a;Arid1a;Arid1a;Arid1a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,13,31,93760,ENSMUSG00000007880,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9216,cg04117904,-0.00000517,0.00000214,-2.417082673,0.016222409,loss,ns,0.0000036,0.00000364,0.988615194,0.323622446,pos,ns,0.001597755,0.001065556,1.499456715,0.134772868,pos,ns,0.870397529,-0.0000885,0.0000366,-2.414513611,0.016335079,neg,ns,0.957845633,Cadm1,Cadm1_Intron,9,47654713,47654762,47654713,47654714,50,+,CGGTCAATTAATAATTAAAACAGTTTTTTAATGAGCTATGCAATTACCTG,"Intron (Cadm1-204/Cadm1, intron 1 of 9)",9,47530173,47853385,323213,1,Cadm1-204,124540,Cadm1-204;Cadm1-209;Cadm1-206;Cadm1-202;Cadm1-203;Cadm1-207;Cadm1-205;Cadm1-211;Cadm1-210;Cadm1-208;Cadm1-201,Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,77,54725,ENSMUSG00000032076,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4242,cg26506340,-0.0000277,0.00000921,-3.003440804,0.002886897,loss,ns,-0.0000155,0.0000156,-0.988556358,0.323651198,neg,ns,-0.010056936,0.004584166,-2.193842099,0.028988834,neg,ns,1.537769252,-0.0000171,0.000157649,-0.108252262,0.913865621,neg,ns,0.771243767,Gm7729,Gm7729_Intergenic_downstream,18,27867050,27867099,27867050,27867051,50,-,CGCTCGATGTGCTGACCTATTTAAAAATATAACTCAGGTGCCTGGCGAAC,Distal Intergenic,18,27598644,27599756,1113,1,Gm7729-201,268455,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,22,665646,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2682,cg15325057,0.0000615,0.0000154,3.996961252,0.0000802,gain,ns,-0.0000258,0.0000261,-0.988546662,0.323655936,neg,ns,-0.000195993,0.007652804,-0.025610556,0.979584444,neg,ns,0.00895812,0.000340938,0.000263179,1.295457412,0.196126309,pos,ns,0.238737599,Adk,Adk_Intron,14,21369166,21369215,21369214,21369215,50,+,GAAGTTCTTTTGGACAGTGATTGATGTGCTATTATACTCTCAGAGCCTCG,"Intron (Adk-201/Adk, intron 8 of 10)",14,21052574,21448569,395996,1,Adk-201,316592,Adk-201;Adk-206;Adk-207;Adk-209,Adk;Adk;Adk;Adk,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,10,11534,ENSMUSG00000039197,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20972,cg14623060,-0.00000192,0.000000702,-2.741010166,0.006480475,loss,ns,0.00000118,0.00000119,0.98845034,0.323703011,pos,ns,0.0000114,0.000349491,0.032620622,0.973998117,pos,ns,0.011441883,0.00000459,0.000012,0.382260266,0.702530251,pos,ns,0.975049561,Zfp326,Zfp326_Exon,5,105888754,105888803,105888754,105888755,50,-,CGCCTGCTTATCCTGAAAGTACGTTTGGAAGCAGAAACTATGATGCTTTT,"Exon (Zfp326-209/Zfp326, exon 5 of 12)",5,105876565,105914780,38216,1,Zfp326-209,12189,Zfp326-209;Zfp326-208;Zfp326-201;Zfp326-205;Zfp326-206;Zfp326-202;Zfp326-203;Zfp326-204,Zfp326;Zfp326;Zfp326;Zfp326;Zfp326;Zfp326;Zfp326;Zfp326,0;0;0;0;0;11813;0;-2141,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,11,54367,ENSMUSG00000029290,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19137,cg04878553,-0.0000127,0.0000108,-1.172886817,0.24174165,loss,ns,0.0000181,0.0000184,0.988359643,0.32374734,pos,ns,0.002024141,0.005376795,0.376458561,0.706833545,pos,ns,0.150682848,-0.000541163,0.000184908,-2.926665621,0.003679475,neg,ns,0.714903302,Adcy6,Adcy6_Exon,15,98600451,98600500,98600499,98600500,50,+,TGTGTTGATGTCTTCTTTCATCTCCATGGCAACGTGCTGGGGCAATACCG,"Exon (Adcy6-201/Adcy6, exon 4 of 22)",15,98589973,98607633,17661,2,Adcy6-201,7133,Adcy6-201;Adcy6-202;Adcy6-207;Adcy6-205;Adcy6-204;Adcy6-203,Adcy6;Adcy6;Adcy6;Adcy6;Adcy6;Adcy6,0;0;0;0;9576;9532,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,11512,ENSMUSG00000022994,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5812,cg27596778,-0.0000178,0.00000592,-3.004746272,0.00287489,loss,ns,0.00000995,0.0000101,0.988346386,0.32375382,pos,ns,-0.004448732,0.002947929,-1.509104495,0.132290587,neg,ns,0.878471056,0.000190091,0.000101379,1.875055392,0.061725071,pos,ns,0.905489709,Gm18252,Gm18252_Promoter,10,34872071,34872120,34872119,34872120,50,-,GTTGCCTGCAGTAATGTCACAGCTTTTCTGTCAGACAGAAGAACTTTGCG,Promoter (6-7kb),10,34878624,35065312,186689,1,Gm18252-202,-6553,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,2,100416790,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8193,cg08926137,0.000102386,0.0000157,6.505358498,3.11E-10,gain,yes,-0.0000264,0.0000267,-0.988318534,0.323767434,neg,ns,0.031957052,0.007833301,4.079640682,0.0000574,pos,ns,4.240970945,-0.001121276,0.000269387,-4.162331445,0.0000409,neg,ns,0.197304084,Jarid2,Jarid2_Exon,13,44840826,44840875,44840826,44840827,50,-,CGGGTCTGTCAGGTGCAGTTTTTGGTGGCTTATCTTGAGGAACCTGGGAT,"Exon (Jarid2-211/Jarid2, exon 1 of 14)",13,44729535,44848340,118806,1,Jarid2-212,111291,Jarid2-212;Jarid2-210;Jarid2-201;Jarid2-209;Jarid2-203;Jarid2-208;Jarid2-215;Jarid2-216;Jarid2-206;Jarid2-205;Jarid2-202;Jarid2-211;Jarid2-207,Jarid2;Jarid2;Jarid2;Jarid2;Jarid2;Jarid2;Jarid2;Jarid2;Jarid2;Jarid2;Jarid2;Jarid2;Jarid2,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,21,16468,ENSMUSG00000038518,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
7871,cg20583510,-0.000000683,0.00000182,-0.3763218,0.706935099,loss,ns,0.00000305,0.00000308,0.988282518,0.323785039,pos,ns,0.001580843,0.000903719,1.749264157,0.08123498,pos,ns,1.090256921,-0.0000547,0.0000311,-1.760525254,0.079304835,neg,ns,0.951947892,Gtdc1,Gtdc1_Intron,2,44575881,44575930,44575881,44575882,50,-,CGTTAGATGAAAATATTAAAAAAGAATTAAGCTAATGGAGATAAAATTAA,"Intron (Gtdc1-203/Gtdc1, intron 7 of 10)",2,44564412,44861622,297211,2,Gtdc1-203,285692,Gtdc1-203;Gtdc1-201;Gtdc1-207;Gtdc1-208;Gtdc1-205,Gtdc1;Gtdc1;Gtdc1;Gtdc1;Gtdc1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,43,227835,ENSMUSG00000036890,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7247,cg17408789,0.0000141,0.00000322,4.361867265,0.0000176,gain,ns,-0.00000541,0.00000548,-0.988165123,0.323842428,neg,ns,0.001628133,0.001604348,1.014825098,0.310980598,pos,ns,0.507266706,-0.0000264,0.0000552,-0.478656643,0.632520334,neg,ns,0.073388749,Gm8707,Gm8707_Intron,9,41736170,41736219,41736170,41736171,50,+,CGTGAAATCAGAGGGGGCAGAGCTGCACGGAATATTAAAACCATGATCAG,"Intron (Gm35835-202/Gm35835-202, intron 2 of 4)",9,41654303,41655282,980,1,Gm8707-201,81867,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,12,667566,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
24588,cg12386540,-0.00000302,0.00000199,-1.514799117,0.130842205,loss,ns,-0.00000334,0.00000338,-0.988128581,0.323860293,neg,ns,0.0000144,0.000991623,0.01449675,0.988442997,pos,ns,0.005048371,0.000015,0.0000341,0.440423932,0.659937037,pos,ns,0.917898713,Sfpq,Sfpq_Intron,4,127032705,127032754,127032705,127032706,50,+,CGTAACTGTGAGGAACGTAGTACCGCAAATGGCAATGGACATTAGGACCC,"Intron (Sfpq-206/Sfpq, intron 7 of 9)",4,127023527,127037013,13487,1,Sfpq-206,9178,Sfpq-201;Sfpq-206;Sfpq-204,Sfpq;Sfpq;Sfpq,0;0;6749,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,12,71514,ENSMUSG00000028820,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13536,cg07012968,0.0000111,0.00000925,1.194896097,0.233040989,gain,ns,-0.0000155,0.0000157,-0.988101371,0.323873596,neg,ns,-0.002292454,0.004605026,-0.497815737,0.618966869,neg,ns,0.208332596,-0.0000372,0.000158366,-0.234877373,0.814458979,neg,ns,0.833351484,Gm10172,Gm10172_Intergenic_downstream,7,71190469,71190518,71190517,71190518,50,+,CGCCCGGTCTCTTTTCTGACATTGTTAGTTGCCTCTTCATTTACTTAACG,Distal Intergenic,7,71332363,71332921,559,2,Gm10172-201,142403,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,31,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23133,cg16318169,0.0000544,0.0000197,2.755806483,0.006201265,gain,ns,-0.0000331,0.0000335,-0.988025447,0.323910717,neg,ns,0.032973876,0.009822669,3.356915946,0.00088634,pos,ns,3.052399614,-0.00087478,0.000337801,-2.589631928,0.010061291,neg,ns,0.296708251,Rnf220,Rnf220_Intron,4,117317630,117317679,117317678,117317679,50,-,ATTGAATTGATAACTGCATCAACGTGCCAGATAACGCCTAAAATAATACG,"Intron (Rnf220-201/Rnf220, intron 2 of 14)",4,117271463,117497052,225590,2,Rnf220-201,179373,Rnf220-201;Rnf220-202;Rnf220-207,Rnf220;Rnf220;Rnf220,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,4,117317524,117317713,190,*,190,13,0.478947368,1.193236715,0.068421053,3.62E-08,CpGisland,TRUE,U13,Hc-P
6427,cg12942440,-0.0000117,0.0000026,-4.501583022,0.00000956,loss,ns,0.00000437,0.00000443,0.988009579,0.323918476,pos,ns,0.001249898,0.001296496,0.96405852,0.335768013,pos,ns,0.47396068,-0.0000696,0.0000446,-1.560007971,0.119778266,neg,ns,0.945214119,Tmem218,Tmem218_Intergenic_upstream,9,37197182,37197231,37197230,37197231,50,-,TGGAACTAATTTCACGCCCTGTAGATATGGTGCTTAAGTTGGAAATGGCG,Distal Intergenic,9,37208223,37224700,16478,1,Tmem218-201,-11041,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,5,66279,ENSMUSG00000032121,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4334,cg19143027,-0.0000033,0.00000295,-1.121461051,0.262959604,loss,ns,-0.00000494,0.000005,-0.987831148,0.324005729,neg,ns,-0.000356199,0.001465808,-0.243005344,0.808161968,neg,ns,0.092501591,0.0000531,0.0000504,1.053077823,0.293125446,pos,ns,0.88386057,Samd4b,Samd4b_Exon,7,28408051,28408100,28408051,28408052,50,-,CGTGGTAAAAGCAGCCCGGGCCCCAAGCTCCTCTGGACTCGGCCACTCAC,"Exon (Samd4b-204/Samd4b, exon 4 of 13)",7,28399522,28436191,36670,2,Samd4b-204,28091,Samd4b-204;Samd4b-201;Samd4b-203;Samd4b-202;Samd4b-205,Samd4b;Samd4b;Samd4b;Samd4b;Samd4b,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,11,233033,ENSMUSG00000109336,conserved gene and region,7,28407945,28408140,196,*,196,11,0.668367347,0.504918033,0.056122449,0.00000383,CpGisland,TRUE,U10,Tr-S
25443,cg15060066,-0.000000963,0.00000293,-0.32839312,0.742836152,loss,ns,0.00000492,0.00000498,0.987806235,0.324017912,pos,ns,0.003456631,0.001458914,2.369317133,0.018433357,pos,ns,1.734395575,-0.000153549,0.0000502,-3.060449314,0.002403282,neg,ns,0.92393865,Gm5904,Gm5904_Intergenic_upstream,7,136610010,136610059,136610058,136610059,50,-,CTTTTAGGCTGCAGGCACTGGCTAGTTGACATGGCAAGCTATATTTTACG,Distal Intergenic,7,136657209,136658073,865,1,Gm5904-201,-47199,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,14,17,546009,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10931,cg21738950,0.0000143,0.0000035,4.075305365,0.0000584,gain,ns,-0.00000587,0.00000594,-0.987756479,0.324042246,neg,ns,0.013832663,0.001740439,7.947802769,3.56E-14,pos,yes,13.4490101,-0.000362937,0.0000599,-6.063758756,3.86E-09,neg,yes,0.936504237,Tcf7l2,Tcf7l2_Intron,19,55888983,55889032,55889031,55889032,50,+,TTCATCGACTGATGAGACCAGAGGCTCCGCCAATAAAAGGTTACAGTACG,"Intron (Tcf7l2-213/Tcf7l2, intron 4 of 13)",19,55741820,55933229,191410,1,Tcf7l2-213,147163,Tcf7l2-213;Tcf7l2-201;Tcf7l2-208;Tcf7l2-211;Tcf7l2-212;Tcf7l2-206;Tcf7l2-204;Tcf7l2-205;Tcf7l2-222;Tcf7l2-215;Tcf7l2-214;Tcf7l2-207;Tcf7l2-202;Tcf7l2-209;Tcf7l2-210;Tcf7l2-217;Tcf7l2-220,Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,55,88,21416,ENSMUSG00000024985,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24400,cg14179336,-0.0000193,0.00000736,-2.616806602,0.009310647,loss,ns,0.0000124,0.0000125,0.987664244,0.324087358,pos,ns,-0.002200071,0.003665405,-0.600225744,0.548794316,neg,ns,0.260590395,0.00000945,0.000126053,0.074979985,0.940278999,pos,ns,0.887447899,Zc3h12a,Zc3h12a_Intergenic_upstream,4,125196547,125196596,125196547,125196548,50,-,CGCTGTTGTTTAGATAAGTTTAAATGAGCTGTGATTAAGCTAATTTTGAG,Distal Intergenic,4,125118423,125127840,9418,2,Zc3h12a-201,-68756,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,5,230738,ENSMUSG00000042677,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4022,cg06484668,0.000029,0.00000549,5.270326636,0.000000256,gain,yes,-0.00000922,0.00000933,-0.987523989,0.324155965,neg,ns,-0.003803634,0.002734341,-1.391060318,0.165204716,neg,ns,0.781977559,0.000154041,0.000094,1.638149232,0.102405115,pos,ns,0.764106263,Gm50479,Gm50479_Intergenic_downstream,8,26504598,26504647,26504598,26504599,50,+,CGGTGGATACGCACTGACATTGATGATATTGCTGAATTAAACGAGGTGAT,Distal Intergenic,8,26237222,26237407,186,1,Gm50479-201,267376,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,21,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20413,cg21820842,0.0000193,0.00000695,2.773877525,0.005875047,gain,ns,0.0000117,0.0000118,0.987511366,0.32416214,pos,ns,-0.001367691,0.003456854,-0.39564607,0.692638286,neg,ns,0.159493506,0.0001838,0.000118881,1.546082777,0.123104798,pos,ns,0.065834239,Hoxc4,Hoxc4_fiveUTR,15,103034713,103034762,103034761,103034762,50,-,CCAGAAATTAATGATCATGAGCTCGTATTTGATGGACTCTAACTACATCG,5' UTR,15,103018934,103036405,17472,1,Hoxc4-202,15779,Hoxc4-202;Hoxc4-201,Hoxc4;Hoxc4,0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,91,15423,ENSMUSG00000075394,conserved gene but different region,15,103034736,103035107,372,*,372,27,0.626344086,0.794494542,0.072580645,4.60E-17,CpGisland,TRUE,U3,Pr-B
20178,cg14502342,-0.00000259,0.00000232,-1.119708316,0.263704859,loss,ns,-0.00000388,0.00000393,-0.987463087,0.324185758,neg,ns,0.000573452,0.00115243,0.497602006,0.619117362,pos,ns,0.208227017,-0.00000785,0.0000396,-0.197967757,0.843200044,neg,ns,0.90195478,Eftud2,Eftud2_Exon,11,102844178,102844227,102844226,102844227,50,+,GCATCACACAGTCCAGGTAGAGCTCCCCAGTGCCCAGGATCACATGCTCG,Promoter (<=1kb),11,102838477,102844218,5742,2,Eftud2-211,0,Eftud2-201;Eftud2-202;Eftud2-211;Eftud2-212;Eftud2-205;Eftud2-208;Eftud2-207;Eftud2-204,Eftud2;Eftud2;Eftud2;Eftud2;Eftud2;Eftud2;Eftud2;Eftud2,0;0;0;0;-2940;-3503;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,20624,ENSMUSG00000020929,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23677,cg27258395,0.0000017,0.00000169,1.004004348,0.316159554,gain,ns,-0.00000283,0.00000287,-0.987435511,0.324199249,neg,ns,0.000500073,0.000840469,0.594993243,0.55228204,pos,ns,0.25783908,0.0000204,0.0000289,0.707367035,0.479869839,pos,ns,0.951074579,Ptbp2,Ptbp2_Exon,3,119726085,119726134,119726133,119726134,50,-,ACCAACAGGACTGTATTGCCACCAGCTGAGACTCCAGGCATACCCACTCG,"Exon (Ptbp2-201/Ptbp2, exon 9 of 14)",3,119718742,119783388,64647,2,Ptbp2-201,57254,Ptbp2-201;Ptbp2-213;Ptbp2-208;Ptbp2-206;Ptbp2-204;Ptbp2-211;Ptbp2-202,Ptbp2;Ptbp2;Ptbp2;Ptbp2;Ptbp2;Ptbp2;Ptbp2,0;0;0;0;0;-1698;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,13,56195,ENSMUSG00000028134,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27415,cg02456804,0.0000116,0.00000383,3.019036981,0.002746411,gain,ns,-0.00000643,0.00000651,-0.987392895,0.324220099,neg,ns,-0.002055596,0.001907379,-1.077707254,0.282002321,neg,ns,0.549747318,-0.0000181,0.0000656,-0.275342308,0.783236697,neg,ns,0.839303624,Fam78b,Fam78b_Exon,1,167078630,167078679,167078678,167078679,50,-,AGAAACTGTGACCCTGGTTGGCCCCACCAACAAGATCTCCAGGTTCTCCG,"Exon (Fam78b-205/Fam78b, exon 2 of 3)",1,167001417,167091302,89886,1,Fam78b-205,77213,Fam78b-205;Fam78b-206;Fam78b-204;Fam78b-202;Fam78b-201;Fam78b-203,Fam78b;Fam78b;Fam78b;Fam78b;Fam78b;Fam78b,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,9,226610,ENSMUSG00000060568,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1471,cg12670534,0.0000289,0.00000887,3.252964747,0.001268052,gain,ns,0.0000149,0.0000151,0.987323576,0.324254015,pos,ns,0.01505499,0.004415299,3.409732671,0.000736331,pos,ns,3.132926687,-0.000430516,0.000151842,-2.835291458,0.004879272,neg,ns,0.639741221,Sema3a,Sema3a_Exon,5,13125384,13125433,13125432,13125433,50,-,ATTACTCAATCCACCGTAAGGCTCTTTAATAGGAAACAAGTGTGACAACG,Promoter (<=1kb),5,13125414,13310754,185341,1,Sema3a-207,0,Gm10108-201;Sema3a-207;Sema3a-208;Sema3a-206,Gm10108;Sema3a;Sema3a;Sema3a,-3618;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,9,20346,ENSMUSG00000028883,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11389,cg18997047,-0.0000313,0.00000717,-4.368483946,0.0000171,loss,ns,-0.000012,0.0000122,-0.98721678,0.324306271,neg,ns,-0.009943463,0.003567655,-2.787114338,0.005646046,neg,ns,2.248255568,-0.000097,0.000122691,-0.790603018,0.429780084,neg,ns,0.785233534,Pcdh7,Pcdh7_threeUTR,5,57913283,57913332,57913331,57913332,50,-,CAAGACTGGGTGCGCTTCCACTCCCAGAGGACAACTATGAAAGGACCACG,3' UTR,5,57717967,58133230,415264,1,Pcdh7-203,195316,Pcdh7-203;Pcdh7-202;Pcdh7-205;Pcdh7-206;Pcdh7-207;Pcdh7-204,Pcdh7;Pcdh7;Pcdh7;Pcdh7;Pcdh7;Pcdh7,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,13,54216,ENSMUSG00000029108,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13390,cg19436327,0.000063,0.00000782,8.05732587,1.70E-14,gain,yes,-0.0000131,0.0000133,-0.987106565,0.324360207,neg,ns,0.011239229,0.003890965,2.888545269,0.004142793,pos,ns,2.382706797,-0.000364936,0.00013381,-2.727269024,0.006749898,neg,ns,0.064990831,Nr2f2,Nr2f2_Exon,7,70359354,70359403,70359354,70359355,50,-,CGGCGAAGTGCATAAAATTGCCATTTGTAATTTGAACCTCCTGTACAAAA,"Exon (Nr2f2-206/Nr2f2, exon 1 of 1)",7,70351944,70360593,8650,2,Nr2f2-201,1190,Nr2f2-201;Nr2f2-203;Nr2f2-202;Nr2f2-205;Nr2f2-204;Nr2f2-206,Nr2f2;Nr2f2;Nr2f2;Nr2f2;Nr2f2;Nr2f2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,24,69,11819,ENSMUSG00000030551,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17964,cg15611903,-0.00000865,0.00000214,-4.040532583,0.0000673,loss,ns,0.00000359,0.00000364,0.987026585,0.32439935,pos,ns,0.001682021,0.001065758,1.5782395,0.115530438,pos,ns,0.937303582,-0.0000557,0.0000367,-1.518760378,0.129841999,neg,ns,0.054839048,Rnpepl1,Rnpepl1_Exon,1,92911077,92911126,92911077,92911078,50,+,CGCAGCTCTTCCGCCTCCGCCACCTGCAGCTGGGCCTGGAGCTGCGGCCC,Promoter (<=1kb),1,92911121,92916737,5617,1,Rnpepl1-202,0,Dusp28-201;Rnpepl1-201;Rnpepl1-210;Rnpepl1-212;Rnpepl1-202;Rnpepl1-211;Rnpepl1-206,Dusp28;Rnpepl1;Rnpepl1;Rnpepl1;Rnpepl1;Rnpepl1;Rnpepl1,4096;0;0;0;0;-83;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,108657,ENSMUSG00000026269,mapped to different genes,1,92910447,92911548,1102,*,1102,143,0.734119782,0.981599601,0.129764065,2.66E-126,CpGisland,TRUE,U1,Pr-A
24205,cg22718540,0.0000107,0.00000595,1.802688928,0.072408187,gain,ns,0.00000997,0.0000101,0.986997621,0.324413526,pos,ns,0.010944579,0.00296032,3.697093041,0.000257837,pos,ns,3.588655469,-0.000320143,0.000101805,-3.144668178,0.001823887,neg,ns,0.071617235,Macf1,Macf1_fiveUTR,4,123411780,123411829,123411780,123411781,50,+,CGCAGCTGTCACGGTCCCGGCATGCAAACTTCTGGCTGGGAACAAAAGGC,5' UTR,4,123349633,123684360,334728,2,Macf1-203,272531,Macf1-203;Macf1-209;Macf1-215;Macf1-218;Macf1-217;Macf1-201;Macf1-205;Macf1-202;Macf1-206;Macf1-208,Macf1;Macf1;Macf1;Macf1;Macf1;Macf1;Macf1;Macf1;Macf1;Macf1,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,16,11426,ENSMUSG00000028649,conserved gene but different region,4,123411411,123412513,1103,*,1103,100,0.708068903,0.725323864,0.090661831,3.13E-71,CpGisland,TRUE,U1,Pr-A
23521,cg17655528,-0.00000163,0.00000116,-1.406948632,0.160444377,loss,ns,-0.00000195,0.00000197,-0.986968129,0.324427961,neg,ns,0.000323266,0.000577366,0.559898712,0.575952871,pos,ns,0.239613052,0.00000555,0.0000199,0.279328892,0.780178702,pos,ns,0.971481877,Med13l,Med13l_Exon,5,118747451,118747500,118747499,118747500,50,-,GAGGAGAATGACAATCATTCCAGACTCAAACTTTATGCGCAAGTTTGCCG,"Exon (Med13l-201/Med13l, exon 20 of 31)",5,118560719,118765438,204720,1,Med13l-201,186732,Med13l-201;Med13l-202;Med13l-205;Med13l-206,Med13l;Med13l;Med13l;Med13l,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,16,76199,ENSMUSG00000018076,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21381,cg01459308,0.0000263,0.0000162,1.624757874,0.105230402,gain,ns,0.0000271,0.0000275,0.986847704,0.324486907,pos,ns,0.051897929,0.008046328,6.44989009,4.29E-10,pos,ns,9.367156646,-0.00188097,0.000276713,-6.797560761,5.47E-11,neg,yes,0.276882001,Apoo-ps,Apoo-ps_Intron,13,107546694,107546743,107546694,107546695,50,-,CGCCAGGGAGAATGGATGCCAAGGTCAGGTTAAGAATAAAGAAAATTGAT,"Intron (Gm32004-204/Gm32004-204, intron 1 of 3)",13,107414144,107414729,586,2,Apoo-ps-201,-132014,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,5,621156,ENSMUSG00000049233,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13095,cg04670975,-0.0000492,0.0000198,-2.479110439,0.013702561,loss,ns,-0.0000333,0.0000337,-0.986831842,0.324494672,neg,ns,-0.02461893,0.0098761,-2.492778566,0.013196413,neg,ns,1.879544106,0.000517021,0.000339638,1.522268285,0.128961253,pos,ns,0.595518527,Tcf4,Tcf4_Intron,18,69415580,69415629,69415580,69415581,50,+,CGACAGTTTGCCAGCTTGATGCGTAAAGGAAGGAAATTTACAAACATCTC,"Intron (Tcf4-259/Tcf4, intron 3 of 6)",18,69343356,69564082,220727,1,Tcf4-259,72224,Tcf4-259;Tcf4-201;Tcf4-207;Tcf4-210;Tcf4-240;Tcf4-254;Tcf4-246;Tcf4-206;Tcf4-202;Tcf4-257;Tcf4-232;Tcf4-215;Tcf4-248;Tcf4-231;Tcf4-205;Tcf4-253;Tcf4-233;Tcf4-238;Tcf4-245;Tcf4-249;Tcf4-219;Tcf4-235;Tcf4-227;Tcf4-250,Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,42,66,21413,ENSMUSG00000053477,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
4584,cg06509306,0.0000365,0.00000578,6.318798527,9.15E-10,gain,yes,-0.00000969,0.00000982,-0.986803632,0.324508481,neg,ns,0.002791902,0.00287624,0.970677852,0.332465466,pos,ns,0.478253459,-0.000229159,0.0000989,-2.316755835,0.021168603,neg,ns,0.213049789,Myt1l,Myt1l_Exon,12,29855235,29855284,29855235,29855236,50,+,CGGACAAAAGCATTCGAAGTATGCTGGCCACCAGCTCCCAAGAACTCAAG,"Exon (Myt1l-205/Myt1l, exon 18 of 25)",12,29528384,29920539,392156,1,Myt1l-205,326851,Myt1l-205;Myt1l-202;Myt1l-201;Myt1l-204;Myt1l-211,Myt1l;Myt1l;Myt1l;Myt1l;Myt1l,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,4,17933,ENSMUSG00000061911,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8778,cg11390627,0.0000693,0.00000713,9.723979402,1.11E-19,gain,yes,-0.000012,0.0000121,-0.98679397,0.324513212,neg,ns,0.01302432,0.003548991,3.669865401,0.000285624,pos,ns,3.544205106,-0.000362894,0.00012205,-2.973330288,0.003176932,neg,ns,0.12423638,Fgf8,Fgf8_fiveUTR,19,45741517,45741566,45741565,45741566,50,+,CTGCCATGGCGTTGATGCGCTTGTTGGCCAGGACCTGCACGTGCTTCCCG,5' UTR,19,45736798,45742874,6077,2,Fgf8-201,1308,Fgf8-201;Fgf8-206;Fgf8-202;Fgf8-205;Fgf8-203;Fgf8-204,Fgf8;Fgf8;Fgf8;Fgf8;Fgf8;Fgf8,0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,18,14179,ENSMUSG00000025219,conserved gene and region,19,45741448,45741621,174,*,174,14,0.643678161,0.780769231,0.08045977,1.09E-09,CpGisland,TRUE,U13,Hc-P
1358,cg23934404,0.000012,0.00000412,2.904301496,0.003945195,gain,ns,-0.00000691,0.000007,-0.986617614,0.324599552,neg,ns,0.004444072,0.002052107,2.165613892,0.031102988,pos,ns,1.507197882,-0.000191559,0.0000706,-2.71437788,0.007011809,neg,ns,0.071201153,Sox1,Sox1_Exon,8,12430353,12430402,12430353,12430354,50,-,CGAGCCGAGGGAGCCCCTTATCCCGGTGACAGAATGGGACAAGCTGGGAA,"Exon (Sox1ot-201/Sox1ot-201, exon 7 of 9)",8,12395295,12400126,4832,1,Sox1-201,35107,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,15,20664,ENSMUSG00000096014,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
12003,cg05870684,-0.00000693,0.00000647,-1.072550991,0.284306852,loss,ns,-0.0000108,0.000011,-0.986482177,0.324665871,neg,ns,-0.00061202,0.003217745,-0.190201638,0.849275616,neg,ns,0.070951345,-0.000306654,0.000110658,-2.771190133,0.005922555,neg,ns,0.846984951,Slc4a10,Slc4a10_threeUTR,2,62324735,62324784,62324735,62324736,50,-,CGAAAAGAGAAGAAAGCTGACTCAGGGAAAGGTGTTGACAGGGAGACTTG,3' UTR,2,62046462,62326730,280269,1,Slc4a10-202,278273,Slc4a10-202;Slc4a10-206;Slc4a10-201;Slc4a10-203;Slc4a10-207,Slc4a10;Slc4a10;Slc4a10;Slc4a10;Slc4a10,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,12,94229,ENSMUSG00000026904,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5929,cg13179794,-0.0000613,0.0000175,-3.508354806,0.000517621,loss,ns,0.0000293,0.0000297,0.986481417,0.324666243,pos,ns,-0.008860398,0.008698514,-1.018610641,0.30918214,neg,ns,0.509785601,0.0001737,0.000299141,0.580661221,0.561890671,pos,ns,0.512414221,Gm5614,Gm5614_Intergenic_upstream,9,35307671,35307720,35307671,35307672,50,+,CGTGAAAATTTTCCAAATATGGAGAGCCATCTGTTGATGATGTGAGAATT,Distal Intergenic,9,35281518,35281835,318,2,Gm5614-201,-25836,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,3,434394,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23459,cg25408698,0.00000269,0.00000944,0.284625057,0.776121451,gain,ns,0.0000158,0.000016,0.986465407,0.324674083,pos,ns,0.010118931,0.004700424,2.152769691,0.032108158,pos,ns,1.493384615,-0.000422779,0.000161647,-2.61544532,0.00934702,neg,ns,0.615638226,Rbfox3,Rbfox3_Exon,11,118502891,118502940,118502891,118502892,50,+,CGGTCAGCATCTGAGCTAGTTTCAAAAGTTACAAACCCAAAACCCTGTGA,"Exon (Rbfox3-205/Rbfox3, exon 7 of 14)",11,118489762,118909550,419789,2,Rbfox3-205,406610,Rbfox3-205;Rbfox3-203;Rbfox3-201;Rbfox3-202;Rbfox3-204;Rbfox3-206;Rbfox3-210;Rbfox3-209,Rbfox3;Rbfox3;Rbfox3;Rbfox3;Rbfox3;Rbfox3;Rbfox3;Rbfox3,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,13,52897,ENSMUSG00000025576,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27901,cg02027148,-0.0000117,0.00000534,-2.192381461,0.029095098,loss,ns,-0.00000895,0.00000908,-0.986298439,0.324755854,neg,ns,-0.000295323,0.002659799,-0.111031923,0.911662883,neg,ns,0.040165726,-0.0000615,0.0000915,-0.672622687,0.501688416,neg,ns,0.863211506,Prox1,Prox1_Exon,1,190161492,190161541,190161540,190161541,50,+,TGGCGCAGCTGTTTCTGCATGTCCTCCAGCTGCTGTTTCAGCTGTCGGCG,"Exon (Prox1-202/Prox1, exon 2 of 5)",1,190118035,190170714,52680,2,Prox1-202,9173,Prox1-202;Prox1-201;Prox1-203,Prox1;Prox1;Prox1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,19,59,19130,ENSMUSG00000010175,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9852,cg17775617,0.0000185,0.00000827,2.242432909,0.025640067,gain,ns,-0.0000139,0.000014,-0.986288528,0.324760708,neg,ns,0.001767132,0.004114275,0.429512417,0.667848732,pos,ns,0.175321894,-0.000102521,0.00014149,-0.724586701,0.469252139,neg,ns,0.698897595,Gm5040,Gm5040_Intergenic_upstream,10,51153746,51153795,51153746,51153747,50,+,CGCCGGTTCATGATGGCCCTTCAGGCTCCACAATTAAGTCGTCCAGCAGG,Distal Intergenic,10,51238829,51239628,800,1,Gm5040-201,-85034,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,11,268300,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7204,cg09316752,-7.54E-08,0.00000129,-0.058350332,0.953507171,loss,ns,0.00000216,0.00000219,0.986250214,0.324779475,pos,ns,0.000720783,0.000643017,1.120939254,0.263181317,pos,ns,0.579744944,-0.000000357,0.0000221,-0.016130573,0.987140599,neg,ns,0.965889825,Dnaic1,Dnaic1_Intron,4,41618442,41618491,41618442,41618443,50,-,CGGGCTGCGTAAAATTTACAAGACTAATTATGTTGTCAGGTCTCTTTGTA,"Intron (Dnaic1-201/Dnaic1, intron 12 of 19)",4,41569775,41638158,68384,1,Dnaic1-201,48667,Dnaic1-201,Dnaic1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,68922,ENSMUSG00000061322,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25551,cg26113059,-0.0000114,0.00000551,-2.074900164,0.038820457,loss,ns,0.00000922,0.00000935,0.986083498,0.32486114,pos,ns,0.004257293,0.002740479,1.553484982,0.121327601,pos,ns,0.91604039,-0.000230123,0.0000942,-2.441761913,0.015174549,neg,ns,0.868029941,Ebf3,Ebf3_Intron,7,137209479,137209528,137209479,137209480,50,-,CGTTTAAGATATGTCAGATTACAAGGCTGTTGTATCAAAAGTCATAAAAC,"Intron (Ebf3-204/Ebf3, intron 10 of 15)",7,137193673,137314445,120773,2,Ebf3-204,104917,Ebf3-204;Ebf3-201;Ebf3-202;Ebf3-203;Ebf3-208;Ebf3-205,Ebf3;Ebf3;Ebf3;Ebf3;Ebf3;Ebf3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,62,84,13593,ENSMUSG00000010476,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13671,cg03237342,0.0000774,0.0000137,5.644167818,3.75E-08,gain,yes,-0.000023,0.0000233,-0.986039316,0.324882784,neg,ns,0.021890213,0.006823438,3.208091214,0.001475931,pos,ns,2.830933889,0.000625927,0.000234657,2.66740677,0.008045493,pos,ns,0.566690047,Tcf12,Tcf12_Intron,9,71976205,71976254,71976205,71976206,50,-,CGCAGGTGCAACACAGCCGTGTAGCAACACACCATTTCACAGTCTATCGG,"Intron (Tcf12-202/Tcf12, intron 5 of 20)",9,71842688,72111847,269160,2,Tcf12-202,135593,Tcf12-202;Tcf12-201;Tcf12-220;Tcf12-221;Tcf12-218;Tcf12-216;Tcf12-208;Tcf12-210;Tcf12-214;Tcf12-205;Tcf12-203;Tcf12-211;Tcf12-204;Tcf12-212,Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,12,21406,ENSMUSG00000032228,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21916,cg13463547,-0.000000297,0.000000258,-1.152001088,0.250208262,loss,ns,0.000000432,0.000000438,0.986011362,0.324896479,pos,ns,-0.000148151,0.000128267,-1.155019854,0.248971818,neg,ns,0.60384981,0.00000405,0.00000441,0.91727937,0.359709333,pos,ns,0.993161473,Rtl1,Rtl1_Exon,12,109712519,109712568,109712567,109712568,50,+,AGAGAGGTGGTCCGTGGCGCGTTCGCTTTATTTATGGCGCACATTACACG,"Exon (Mir323-201/Mir323-201, exon 1 of 1)",12,109589193,109600330,11138,2,Rtl1-201,-112189,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,9,353326,ENSMUSG00000085925,mapped to different genes,12,109712531,109712603,73,*,73,10,0.561643836,1.763285024,0.136986301,2.44E-09,CpGisland,TRUE,NA,NRS
3677,cg22814917,-0.00000989,0.00000681,-1.452547721,0.147360776,loss,ns,-0.0000114,0.0000116,-0.986003604,0.32490028,neg,ns,-0.006477503,0.003387176,-1.912360918,0.056751352,neg,ns,1.246023787,-0.000112576,0.000116485,-0.966443695,0.334575553,neg,ns,0.691441226,Gm12067,Gm12067_Intergenic_upstream,11,24980593,24980642,24980641,24980642,50,-,CAGCCATCGCTGTCTTGGCTCCACCTGATTAAAAGATGTGCCATTCAACG,Distal Intergenic,11,24552438,24553962,1525,2,Gm12067-201,-426680,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,26,58,100417843,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6113,cg05517189,-0.000019,0.00000618,-3.081408339,0.002245077,loss,ns,-0.0000104,0.0000105,-0.985951883,0.32492562,neg,ns,-0.007191519,0.003076121,-2.337853424,0.020030692,neg,ns,1.698304041,0.000164435,0.000105788,1.55438772,0.121112249,pos,ns,0.908829715,Lhx6,Lhx6_Exon,2,36087457,36087506,36087457,36087458,50,+,CGCACTGTACCTGACCTGTGGACGAGAGGATGCCTTGGAGCTCATCCCCC,"Exon (Lhx6-202/Lhx6, exon 8 of 9)",2,36081953,36104060,22108,2,Lhx6-202,16554,Lhx6-202;Lhx6-204;Lhx6-201;Lhx6-205;Lhx6-203;Lhx6-206;Lhx6-208,Lhx6;Lhx6;Lhx6;Lhx6;Lhx6;Lhx6;Lhx6,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,9,16874,ENSMUSG00000026890,conserved gene and region,2,36087316,36087480,165,*,165,10,0.636363636,0.598693759,0.060606061,0.00000645,CpGisland,TRUE,NA,NRS
17576,cg05568713,0.000136767,0.000013,10.55752365,1.84E-22,gain,yes,-0.0000217,0.000022,-0.98592486,0.32493886,neg,ns,0.015637353,0.006447552,2.425316351,0.015865921,pos,ns,1.799534726,-0.000405189,0.000221731,-1.827390262,0.068602341,neg,ns,0.496808404,H3f3a-ps2,H3f3a-ps2_Intergenic_downstream,16,91105165,91105214,91105213,91105214,50,-,GTTTGAAGGCTAACCAATTTGTACTTACAAATCTGGGGCATTAGCAGACG,Distal Intergenic,16,91114189,91114599,411,2,H3f3a-ps2-201,9434,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,15080,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6219,cg07977919,-0.00000259,0.00000152,-1.696010063,0.090887912,loss,ns,-0.00000255,0.00000259,-0.985876453,0.324962579,neg,ns,-0.0000507,0.000758627,-0.066863712,0.946733304,neg,ns,0.023772345,-0.0000415,0.0000261,-1.591160457,0.112592668,neg,ns,0.957656247,Tenm2,Tenm2_Intron,11,36383723,36383772,36383723,36383724,50,+,CGGTAGAAAGGTTGAATTCATTTACTGTGTGGTTATGCTAGTTATGATTG,"Intron (Tenm2-202/Tenm2, intron 5 of 30)",11,36006656,37235882,1229227,2,Tenm2-202,852110,Tenm2-202;Tenm2-208;Tenm2-201;Tenm2-204;Tenm2-205;Tenm2-206;Tenm2-203,Tenm2;Tenm2;Tenm2;Tenm2;Tenm2;Tenm2;Tenm2,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,47,84,23964,ENSMUSG00000049336,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23489,cg00716110,-0.00000516,0.00000205,-2.514426405,0.012428708,loss,ns,-0.00000343,0.00000348,-0.985576204,0.325109718,neg,ns,-0.001371122,0.001020409,-1.34369764,0.180028859,neg,ns,0.744657871,0.000036,0.0000351,1.025239183,0.306049682,pos,ns,0.952126763,Gm9267,Gm9267_Intergenic_downstream,12,118647524,118647573,118647572,118647573,50,+,CCATATCAAACAACACAAATGACTTAATTTGCATGACAGGATTTGTAACG,Distal Intergenic,12,118602677,118603080,404,1,Gm9267-201,44847,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,20,668611,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24959,cg19241319,0.0000475,0.0000106,4.46082518,0.0000114,gain,ns,-0.0000178,0.0000181,-0.985382071,0.325204878,neg,ns,0.019504197,0.005295307,3.683298794,0.00027158,pos,ns,3.566102657,-0.000672187,0.000182105,-3.691201996,0.000263624,neg,ns,0.213316145,Fgfr2,Fgfr2_Intron,7,130215905,130215954,130215953,130215954,50,+,AATTTGTGACATAATCAGGCCTCTCTCTGCATTACTCCATACACTCCACG,"Intron (Fgfr2-211/Fgfr2, intron 4 of 15)",7,130162451,130266263,103813,2,Fgfr2-211,50309,Fgfr2-211;Fgfr2-217;Fgfr2-207;Fgfr2-226;Fgfr2-215;Fgfr2-201;Fgfr2-202;Fgfr2-203;Fgfr2-204;Fgfr2-205;Fgfr2-206;Fgfr2-208;Fgfr2-209;Fgfr2-210;Fgfr2-212;Fgfr2-213;Fgfr2-214;Fgfr2-216;Fgfr2-218,Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,58,79,14183,ENSMUSG00000030849,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6064,cg18132535,0.0000986,0.00000877,11.25067256,7.46E-25,gain,yes,-0.0000147,0.0000149,-0.985380338,0.325205727,neg,ns,0.011067926,0.004363518,2.536468426,0.011688116,pos,ns,1.932255479,-0.000204152,0.000150061,-1.360459036,0.174673075,neg,ns,0.431988962,Psd2,Psd2_Intergenic_upstream,18,35933577,35933626,35933577,35933578,50,-,CGGATGACAGGTTGTGGGAACAACAGCTTGAATTACGGAAAGAAGTTTCC,Distal Intergenic,18,35964830,36014712,49883,1,Psd2-201,-31253,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,24,29,74002,ENSMUSG00000024347,mapped to different genes,18,35933527,35933613,87,*,87,8,0.609195402,0.991452992,0.091954023,0.00000415,CpGisland,TRUE,U3,Pr-B
19266,cg23179344,-0.00000274,0.00000182,-1.504751164,0.133406216,loss,ns,0.00000305,0.0000031,0.985353785,0.325218744,pos,ns,0.001751003,0.000907863,1.928709017,0.054679822,pos,ns,1.262172906,-0.0000318,0.0000312,-1.020032157,0.308508585,neg,ns,0.054242177,Kmt2d,Kmt2d_Promoter,15,98871288,98871337,98871336,98871337,50,+,CGGACACAAAGAGAGCACCGGTGGCTTTGATCTTGGGCGAGCAGGCTCCG,Promoter (<=1kb),15,98831672,98871204,39533,2,Kmt2d-201,-84,Kmt2d-202;Kmt2d-201,Kmt2d;Kmt2d,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,16,381022,ENSMUSG00000048154,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
25586,cg25510235,0.00000316,0.0000026,1.215284291,0.225182427,gain,ns,0.00000435,0.00000441,0.985261075,0.325264196,pos,ns,0.002021352,0.001292908,1.563415498,0.118975127,pos,ns,0.924543822,-0.0000843,0.0000445,-1.895538222,0.058951121,neg,ns,0.938717129,Ebf3,Ebf3_Intron,7,137263940,137263989,137263988,137263989,50,+,AATTTGAAAGTGCAATTTTCCATCTGTCAATCACCTTTCAAAGGGACCCG,"Intron (Ebf3-204/Ebf3, intron 6 of 15)",7,137193673,137314445,120773,2,Ebf3-204,50456,Ebf3-204;Ebf3-201;Ebf3-202;Ebf3-203;Ebf3-208;Ebf3-205,Ebf3;Ebf3;Ebf3;Ebf3;Ebf3;Ebf3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,62,84,13593,ENSMUSG00000010476,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3315,cg21739313,0.0000153,0.00000419,3.658433671,0.000298112,gain,ns,-0.00000701,0.00000711,-0.985218211,0.325285212,neg,ns,-0.003326349,0.002083768,-1.596314748,0.111437405,neg,ns,0.952969012,0.000098,0.0000717,1.367402259,0.172489846,pos,ns,0.928489976,Srpk2,Srpk2_Exon,5,23540379,23540428,23540379,23540380,50,-,CGAATGATACTCTTCACACAACGTACTGGGAGGCCTTGATAGTTGGATTT,"Exon (Srpk2-201/Srpk2, exon 6 of 15)",5,23503264,23616534,113271,2,Srpk2-201,76106,Srpk2-201;Srpk2-204;Srpk2-210;Srpk2-202;Srpk2-205,Srpk2;Srpk2;Srpk2;Srpk2;Srpk2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,8,20817,ENSMUSG00000062604,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18336,cg11160393,-0.000000783,0.000000958,-0.817191871,0.414446376,loss,ns,-0.0000016,0.00000163,-0.984979869,0.325402086,neg,ns,-0.000586506,0.000476827,-1.23001754,0.219623156,neg,ns,0.658321872,0.0000288,0.0000164,1.756494068,0.079991427,pos,ns,0.984404001,Tbca,Tbca_Intron,13,94817613,94817662,94817613,94817614,50,+,CGCTACGGTTCGCAGCTAATGAGCATGCAGCTGGATTGCAAATGGCTGGA,"Intron (Tbca-201/Tbca, intron 1 of 3)",13,94788910,94842922,54013,1,Tbca-201,28703,Tbca-201;Tbca-203;Tbca-204,Tbca;Tbca;Tbca,0;0;-72,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,9,21371,ENSMUSG00000042043,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11333,cg23181591,-0.00000466,0.00000129,-3.621341896,0.000342259,loss,ns,0.00000215,0.00000218,0.984896284,0.325443079,pos,ns,0.0000363,0.000640116,0.056774573,0.954761345,pos,ns,0.020105172,-0.0000169,0.000022,-0.767799511,0.443190737,neg,ns,0.046046315,Zhx2,Zhx2_fiveUTR,15,57694644,57694693,57694644,57694645,50,+,CGCATGCTGACGTTACAGATCATGTGGGTTTTGGCGTAGATTCCCCACTG,Promoter (<=1kb),15,57694665,57839832,145168,1,Zhx2-201,0,Zhx2-201;Zhx2-202,Zhx2;Zhx2,0;-1036,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,6,387609,ENSMUSG00000071757,conserved gene but different region,15,57694551,57694697,147,*,147,11,0.551020408,1.004347826,0.074829932,0.000000227,CpGisland,TRUE,U2,Pr-W
23107,cg12047706,0.000107681,0.0000229,4.693759727,0.00000403,gain,ns,-0.0000384,0.000039,-0.984820926,0.325480041,neg,ns,0.025213598,0.011418094,2.208214287,0.027961008,pos,ns,1.553447173,-0.000768519,0.000392667,-1.95717493,0.051224076,neg,ns,0.27340055,Rnf220,Rnf220_Intron,4,117304100,117304149,117304100,117304101,50,+,CGCACCCAATTACAATGTTAATTGGCAAGTTCCTGAAATCAATTAATTCG,"Intron (Rnf220-201/Rnf220, intron 3 of 14)",4,117271463,117497052,225590,2,Rnf220-201,192903,Rnf220-201;Rnf220-202;Rnf220-208;Rnf220-207,Rnf220;Rnf220;Rnf220;Rnf220,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20725,cg03048497,0.00000205,0.00000242,0.849196364,0.396427335,gain,ns,0.00000405,0.00000411,0.984787492,0.32549644,pos,ns,0.005158521,0.001204114,4.284080561,0.0000245,pos,ns,4.610607952,-0.000174111,0.0000414,-4.204629917,0.0000343,neg,ns,0.9386182,Cstf3,Cstf3_Exon,2,104653007,104653056,104653007,104653008,50,-,CGCATGAAGTATGAAAAGGTTCACAGTATATATAACAGACTTCTGGCAAT,"Exon (Cstf3-201/Cstf3, exon 13 of 21)",2,104590523,104665429,74907,1,Cstf3-201,62484,Cstf3-201;Cstf3-203;Tcp11l1-204,Cstf3;Cstf3;Tcp11l1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,6,228410,ENSMUSG00000027176,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11818,cg21770499,-0.0000161,0.00000557,-2.891715983,0.004102318,loss,ns,0.00000933,0.00000947,0.984786839,0.325496761,pos,ns,0.002714969,0.002774249,0.978632078,0.328524895,pos,ns,0.483431715,-0.0000217,0.0000954,-0.227806837,0.81994659,neg,ns,0.841865796,Unc5b,Unc5b_Intron,10,60937255,60937304,60937303,60937304,50,+,TCGCTAATCTTCTTATAAACATTGTTATTTATTTTTTCTTATTTTATCCG,"Intron (Gm26947-201/Gm26947-201, intron 3 of 4)",10,60762593,60831581,68989,2,Unc5b-201,-105674,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,107449,ENSMUSG00000020099,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20801,cg21779342,-0.0000163,0.0000098,-1.66498695,0.096925644,loss,ns,-0.0000164,0.0000167,-0.984625959,0.32557568,neg,ns,-0.000204566,0.004878908,-0.041928697,0.966582532,neg,ns,0.014761058,0.0000533,0.000167785,0.317573606,0.751022195,pos,ns,0.823512486,Ndfip2,Ndfip2_Intergenic_downstream,14,105377944,105377993,105377992,105377993,50,+,CAAAGCACAGCTGGTTTATGTCTGTCACAATCAATGGGATGACATTTCCG,Distal Intergenic,14,105294546,105308869,14324,1,Ndfip2-203,83398,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,7,76273,ENSMUSG00000053253,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6101,cg05615712,0.00000433,0.00000309,1.39817789,0.163059157,gain,ns,0.00000518,0.00000526,0.984573238,0.325601545,pos,ns,-0.000633907,0.001540229,-0.411566545,0.680941559,neg,ns,0.166890159,0.0000155,0.000053,0.29218964,0.770337083,pos,ns,0.940613096,Nrg2,Nrg2_Intron,18,36035875,36035924,36035923,36035924,50,+,AGAAACTGGAATGAAACTGACCAGTGTAGTTTCATTATCCAAGCTAAGCG,"Intron (Nrg2-203/Nrg2, intron 4 of 9)",18,36017652,36197380,179729,2,Nrg2-203,161456,Nrg2-203;Nrg2-206;Nrg2-202;Nrg2-205;Nrg2-204;Nrg2-201,Nrg2;Nrg2;Nrg2;Nrg2;Nrg2;Nrg2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,20,100042150,ENSMUSG00000060275,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2106,cg11961127,0.0000931,0.0000389,2.391943378,0.017354995,gain,ns,-0.0000651,0.0000661,-0.984554108,0.325610931,neg,ns,0.012907943,0.019362953,0.666630878,0.505503772,pos,ns,0.296275599,0.000174599,0.00066589,0.262204242,0.793338132,pos,ns,0.539598863,Skida1,Skida1_fiveUTR,2,18048941,18048990,18048989,18048990,50,+,AGCATACCCTTATACTGCCACCTCCCCTCCCAAAGTAAATAATACAGTCG,Promoter (<=1kb),2,18044083,18049051,4969,2,Skida1-202,61,Skida1-205;Skida1-202;Skida1-201;Skida1-203;Skida1-204,Skida1;Skida1;Skida1;Skida1;Skida1,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,8,31,72668,ENSMUSG00000054074,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
10340,cg01450839,0.000138607,0.000016,8.687179324,2.18E-16,gain,yes,-0.0000267,0.0000271,-0.984553519,0.32561122,neg,ns,0.051700395,0.007941115,6.510470841,3.02E-10,pos,ns,9.52071226,-0.00054644,0.000273094,-2.000922094,0.04627237,neg,ns,0.56021269,Abca1,Abca1_Exon,4,53072925,53072974,53072925,53072926,50,-,CGCTGCCCAGGCCAGCATCAGAACTGCTCTGAGAAACACTGTCCTCCTGA,"Exon (Abca1-201/Abca1, exon 24 of 50)",4,53030787,53159895,129109,2,Abca1-201,86921,Abca1-201,Abca1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,7,11303,ENSMUSG00000015243,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12640,cg17214935,0.00000971,0.00000488,1.987757122,0.047718026,gain,ns,0.00000817,0.0000083,0.984433294,0.325670209,pos,ns,0.002511656,0.002430242,1.033500491,0.302175319,pos,ns,0.519741011,0.00000128,0.0000836,0.015284565,0.987814988,pos,ns,0.876172761,Scn1a,Scn1a_threeUTR,2,66288890,66288939,66288938,66288939,50,+,AGATACCCAAATCCTACATTATCAAAGTTTACTTTCACATTTTTCCATCG,3' UTR,2,66270778,66317946,47169,2,Scn1a-208,29007,Scn1a-208;Scn1a-203;Scn1a-204;Scn1a-201;Scn1a-202;Scn1a-207,Scn1a;Scn1a;Scn1a;Scn1a;Scn1a;Scn1a,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,4,20265,ENSMUSG00000064329,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10949,cg26851956,-0.00000273,0.0000014,-1.946911522,0.052448253,loss,ns,-0.00000234,0.00000238,-0.984317691,0.325726937,neg,ns,-0.000604602,0.000697244,-0.867130997,0.386540933,neg,ns,0.412804509,0.0000123,0.000024,0.512108905,0.608939429,pos,ns,0.96134139,Tcf7l2,Tcf7l2_Exon,19,55910630,55910679,55910630,55910631,50,+,CGCCTGGCACCGTAGGACAAATCCCCCATCCGCTAGGATGGTTAGTACCA,"Exon (Tcf7l2-213/Tcf7l2, exon 6 of 14)",19,55741820,55933229,191410,1,Tcf7l2-213,168810,Tcf7l2-213;Tcf7l2-201;Tcf7l2-208;Tcf7l2-211;Tcf7l2-212;Tcf7l2-206;Tcf7l2-204;Tcf7l2-205;Tcf7l2-222;Tcf7l2-215;Tcf7l2-214;Tcf7l2-207;Tcf7l2-202;Tcf7l2-209;Tcf7l2-210;Tcf7l2-217;Tcf7l2-220;Tcf7l2-218;Tcf7l2-203;Tcf7l2-216;Tcf7l2-219;Tcf7l2-221,Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,88,21416,ENSMUSG00000024985,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24250,cg00073543,0.0000101,0.00000247,4.087191295,0.0000557,gain,ns,-0.00000414,0.0000042,-0.984220011,0.325774874,neg,ns,0.000878,0.001230902,0.713297647,0.476198212,pos,ns,0.322212239,-0.0000736,0.0000423,-1.738094754,0.083187086,neg,ns,0.05285142,Gm12902,Gm12902_Intergenic_downstream,4,124278030,124278079,124278030,124278031,50,+,CGAATCAGCTCCATCAGGCCTGGCAAAGAGGCATTTAAATTGCTAATATT,Distal Intergenic,4,123926234,123926555,322,1,Gm12902-201,351796,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,34,34,,NA,mapped to different genes,4,124277811,124278031,221,*,221,19,0.665158371,0.785447063,0.085972851,1.56E-13,CpGisland,TRUE,U13,Hc-P
11820,cg01996306,0.00000568,0.00000423,1.342559621,0.180396888,gain,ns,-0.00000708,0.00000719,-0.984165417,0.325801669,neg,ns,-0.003575366,0.002107357,-1.696611403,0.090773952,neg,ns,1.042038755,0.000110741,0.0000725,1.528051017,0.127519545,pos,ns,0.792368513,Camk2a,Camk2a_Exon,18,60958174,60958223,60958222,60958223,50,-,GAAGCCAAGGATCTGATCAATAAGATGCTGACCATTAACCCATCCAAACG,"Exon (Camk2a-203/Camk2a, exon 10 of 18)",18,60925618,60988152,62535,1,Camk2a-203,32556,Camk2a-203;Camk2a-201;Camk2a-207,Camk2a;Camk2a;Camk2a,0;0;31225,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,7,12322,ENSMUSG00000024617,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22637,cg08078389,0.00000434,0.00000487,0.890297813,0.373996402,gain,ns,-0.00000814,0.00000827,-0.984064514,0.325851196,neg,ns,0.000576047,0.002424071,0.237636058,0.812320361,pos,ns,0.090272661,-0.000125449,0.0000834,-1.504836846,0.133384187,neg,ns,0.924631882,Maf,Maf_Intergenic_downstream,8,115513634,115513683,115513682,115513683,50,+,ATGCCACCTTTGGTTATTAACATGTCTCTCTCTACTTTTATGATTTTTCG,Distal Intergenic,8,115682942,115707096,24155,2,Maf-201,193413,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,23,17132,ENSMUSG00000055435,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22289,cg14965437,-0.0000229,0.00000945,-2.418050098,0.01618016,loss,ns,-0.0000158,0.0000161,-0.983908767,0.325927652,neg,ns,-0.008985551,0.004703769,-1.910287276,0.057018741,neg,ns,1.243982374,-0.0000659,0.000161762,-0.407271114,0.684089958,neg,ns,0.806696288,Sox9,Sox9_Intergenic_downstream,11,112970205,112970254,112970253,112970254,50,+,TTGCACACTTGAAGACCATTATTAAGATTCCCTTTGGCCATAAACATACG,Distal Intergenic,11,112782224,112787760,5537,1,Sox9-201,187981,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,7,20682,ENSMUSG00000000567,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
958,cg08986684,-0.00000532,0.00000287,-1.854486914,0.064619018,loss,ns,0.0000048,0.00000487,0.983895328,0.325934249,pos,ns,0.000417183,0.001427888,0.292167655,0.770353875,pos,ns,0.113309728,-0.000013,0.0000491,-0.26386902,0.792056169,neg,ns,0.036908005,Taf3,Taf3_fiveUTR,2,10048356,10048405,10048356,10048357,50,-,CGCCACCGAGACCCTCAACAACGACCTGGAGTAACTCTCGCACATCCCGC,Promoter (<=1kb),2,9914552,10048596,134045,2,Taf3-201,191,Taf3-201,Taf3,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,7,209361,ENSMUSG00000025782,conserved gene but different region,2,10047801,10048828,1028,*,1028,84,0.660505837,0.750052116,0.081712062,5.22E-56,CpGisland,TRUE,NA,NRS
4128,cg10502710,0.00000322,0.000005,0.644623203,0.519648113,gain,ns,0.00000835,0.00000849,0.983886816,0.325938428,pos,ns,0.002709357,0.002487122,1.089354263,0.276843789,pos,ns,0.557765215,-0.0000884,0.0000855,-1.033405945,0.302219472,neg,ns,0.743711575,Syngap1,Syngap1_Exon,17,26944704,26944753,26944704,26944705,50,-,CGGTTCTGCATCATCTCGGGGAACCAGCTGCTCATGCTGGATGAGGATGA,"Exon (Syngap1-204/Syngap1, exon 2 of 19)",17,26941253,26972434,31182,1,Syngap1-204,3451,Syngap1-204;Syngap1-213;Syngap1-208;Syngap1-202;Syngap1-207;Syngap1-203,Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,18,240057,ENSMUSG00000067629,conserved gene and region,17,26944638,26944839,202,*,202,13,0.608910891,0.715141612,0.064356436,7.49E-08,CpGisland,TRUE,U11,Tr-P
10437,cg26485928,-0.0000439,0.00000851,-5.157655893,0.000000447,loss,yes,-0.0000142,0.0000145,-0.983758811,0.326001276,neg,ns,-0.011322423,0.004237988,-2.671650281,0.007946768,neg,ns,2.099809479,0.0000818,0.000145744,0.561321366,0.574984018,pos,ns,0.820997995,Prdm6,Prdm6_Intron,18,53538541,53538590,53538541,53538542,50,-,CGTTGGGACGCCATGAAGCTATCTTTATGAGTCATCCAACCACAATACTA,"Intron (Prdm6-201/Prdm6, intron 3 of 6)",18,53464516,53575857,111342,1,Prdm6-201,74025,Prdm6-201;Prdm6-203;Prdm6-204,Prdm6;Prdm6;Prdm6,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,16,225518,ENSMUSG00000069378,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25603,cg15158016,0.000176641,0.00000907,19.46557201,1.07E-55,gain,yes,0.0000152,0.0000154,0.983606161,0.326076234,pos,ns,0.014793561,0.004516495,3.275451946,0.001174419,pos,ns,2.93017683,-0.0000437,0.000155322,-0.281538635,0.778485138,neg,ns,0.518525497,Ebf3,Ebf3_Intron,7,137307256,137307305,137307304,137307305,50,-,AACTGCTTCCCTTGACAACTCACAAGCAATTACTGAATCCCCACAGAGCG,"Intron (Ebf3-204/Ebf3, intron 6 of 15)",7,137193673,137314445,120773,2,Ebf3-204,7140,Ebf3-204;Ebf3-201;Ebf3-202;Ebf3-203;Ebf3-208;Ebf3-206,Ebf3;Ebf3;Ebf3;Ebf3;Ebf3;Ebf3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,62,84,13593,ENSMUSG00000010476,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
8780,cg13388302,0.000108694,0.00000914,11.89452287,3.95E-27,gain,yes,-0.0000153,0.0000155,-0.983533849,0.326111747,neg,ns,0.014303058,0.004548168,3.14479566,0.001823117,pos,ns,2.739185495,-0.000298844,0.000156411,-1.910632304,0.056974178,neg,ns,0.095716362,Fgf8,Fgf8_fiveUTR,19,45741546,45741595,45741594,45741595,50,+,AGGACCTGCACGTGCTTCCCGCTGGTGCGGCTGTAGAGTTGGTAGGTCCG,5' UTR,19,45736798,45742874,6077,2,Fgf8-201,1279,Fgf8-201;Fgf8-206;Fgf8-202;Fgf8-205;Fgf8-203;Fgf8-204,Fgf8;Fgf8;Fgf8;Fgf8;Fgf8;Fgf8,0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,18,14179,ENSMUSG00000025219,conserved gene and region,19,45741448,45741621,174,*,174,14,0.643678161,0.780769231,0.08045977,1.09E-09,CpGisland,TRUE,U13,Hc-P
2556,cg25040192,0.000111155,0.0000164,6.762116701,6.77E-11,gain,yes,-0.0000275,0.0000279,-0.983475169,0.326140566,neg,ns,0.018991242,0.008181287,2.321302542,0.020918699,pos,ns,1.679465322,-0.000500028,0.000281354,-1.777219862,0.076512499,neg,ns,0.390201595,Elmo1,Elmo1_Intron,13,20512603,20512652,20512603,20512604,50,+,CGACAGGTAAATATTGGCTTTGCACAAACAAGTTTCTATAAATAACCTGT,"Intron (Elmo1-201/Elmo1, intron 16 of 21)",13,20090619,20608353,517735,1,Elmo1-201,421984,Elmo1-201;Elmo1-203,Elmo1;Elmo1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,4,140580,ENSMUSG00000041112,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15581,cg04348533,-0.0000413,0.0000191,-2.168366717,0.030891123,loss,ns,-0.0000318,0.0000324,-0.983228724,0.326261621,neg,ns,-0.018212514,0.009488986,-1.919331949,0.055860136,neg,ns,1.25289801,-0.00000996,0.000326325,-0.030511423,0.975678817,neg,ns,0.604519449,Cetn3,Cetn3_Intergenic_downstream,13,81910483,81910532,81910483,81910484,50,-,CGTGAAGGGTATGTAGCTAACACAACAAAATGAATTTTAAAGAAAATTTG,Distal Intergenic,13,81791977,81793668,1692,1,Cetn3-204,118555,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,9,12626,ENSMUSG00000021537,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
413,cg25231972,0.0000136,0.00000319,4.263651037,0.0000267,gain,ns,0.00000533,0.00000542,0.983190416,0.326280441,pos,ns,0.005946341,0.001587559,3.745586072,0.000214547,pos,ns,3.668477298,-0.000161664,0.0000546,-2.961100709,0.003302172,neg,ns,0.068309416,Zeb1,Zeb1_fiveUTR,18,5591882,5591931,5591882,5591883,50,+,CGAGCATTTAGACACAAGCGAGAGGATCATGGCGGATGGCCCCAGGTGTA,Promoter (<=1kb),18,5591891,5766533,174643,1,Zeb1-202,0,Zeb1-212;Zeb1-201;Zeb1-204;Zeb1-202;Zeb1-209;Zeb1-206;Zeb1-208;Zeb1-205;Zeb1-211;Zeb1-207,Zeb1;Zeb1;Zeb1;Zeb1;Zeb1;Zeb1;Zeb1;Zeb1;Zeb1;Zeb1,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,7,21417,ENSMUSG00000024238,mapped to different genes,18,5591882,5592967,1086,*,1086,159,0.745856354,1.076353436,0.14640884,2.52E-150,CpGisland,TRUE,U1,Pr-A
2311,cg04701907,-0.00000571,0.00000515,-1.107996144,0.2687224,loss,ns,0.0000086,0.00000875,0.98310769,0.326321084,pos,ns,0.005432793,0.002563858,2.118991403,0.034886099,pos,ns,1.457347588,-0.0000992,0.0000882,-1.124725362,0.26157553,neg,ns,0.888564237,Meis1,Meis1_Exon,11,19010997,19011046,19010997,19010998,50,-,CGACAAGAAACAGGTCAAGTTTGCTAGCAAAGCTTTTACAAGCTCATCTC,"Exon (Gm16140-201/Gm16140-201, exon 2 of 2)",11,18879817,19018985,139169,2,Meis1-206,7939,Meis1-206;Meis1-202;Meis1-209;Meis1-201;Meis1-203;Meis1-208;Meis1-207;Meis1-204;Meis1-205,Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,21,88,17268,ENSMUSG00000020160,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25081,cg05734031,-0.0000072,0.00000261,-2.754277266,0.006229609,loss,ns,-0.00000436,0.00000444,-0.983099879,0.326324922,neg,ns,-0.000611431,0.001300736,-0.470065211,0.638638939,neg,ns,0.194744605,-0.0000507,0.0000447,-1.133244352,0.257987324,neg,ns,0.963765908,Nfasc,Nfasc_Exon,1,132584406,132584455,132584454,132584455,50,+,TGTGCTTCCAGGTGATGTTGGCCCATTTACTGTTGGGGAGCACCGTGACG,"Exon (Nfasc-202/Nfasc, exon 26 of 30)",1,132564690,132741757,177068,2,Nfasc-202,157302,Nfasc-202;Nfasc-201;Nfasc-207;Nfasc-203;Nfasc-205;Nfasc-204,Nfasc;Nfasc;Nfasc;Nfasc;Nfasc;Nfasc,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,10,269116,ENSMUSG00000026442,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23148,cg22621796,-0.00000311,0.00000835,-0.371970369,0.710169047,loss,ns,-0.0000139,0.0000142,-0.983077943,0.3263357,neg,ns,-0.009657775,0.004155588,-2.324045372,0.020769196,neg,ns,1.682580311,0.000390304,0.00014291,2.731113665,0.006673514,pos,ns,0.916268638,Rnf220,Rnf220_Intron,4,117353261,117353310,117353309,117353310,50,+,TATGGGCAGCGTGTGCCCCTCTGATAGATCGGACTATTTAAAGGCAGCCG,"Intron (Rnf220-201/Rnf220, intron 2 of 14)",4,117271463,117497052,225590,2,Rnf220-201,143742,Rnf220-201;Rnf220-202;Rnf220-207,Rnf220;Rnf220;Rnf220,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11615,cg25692667,0.0000653,0.00000699,9.350848254,1.80E-18,gain,yes,-0.0000117,0.0000119,-0.983046318,0.326351239,neg,ns,0.00339137,0.003477129,0.975336185,0.330153993,pos,ns,0.481283446,0.000103973,0.000119578,0.869495456,0.385248909,pos,ns,0.234691274,Emx2,Emx2_Intergenic_downstream,19,59466313,59466362,59466361,59466362,50,+,TACAAGCTTTGTTAACATCTTGCCTTGAAAAGTTAAGATTAGACATTCCG,Distal Intergenic,19,59462802,59464215,1414,1,Emx2-203,3511,Emx2-201;Emx2-202;Emx2-203,Emx2;Emx2;Emx2,0;6794;3511,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,15,23,13797,ENSMUSG00000043969,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
24904,cg16259859,-0.00000141,0.00000139,-1.014102154,0.311324845,loss,ns,-0.00000233,0.00000237,-0.98294805,0.326399526,neg,ns,0.001493391,0.000693859,2.152298578,0.032145552,pos,ns,1.492879111,-0.0000601,0.0000239,-2.520745534,0.012212234,neg,ns,0.061681544,Zbtb8a,Zbtb8a_fiveUTR,4,129377923,129377972,129377923,129377924,50,-,CGAGGGCTGGGGACACAATTAAAGGGGCAACGCACAGATTTCAGGCACCA,Promoter (<=1kb),4,129353628,129378116,24489,2,Zbtb8a-201,144,Gm12980-201;Zbtb8a-201,Gm12980;Zbtb8a,-1872;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,5,73680,ENSMUSG00000028807,conserved gene but different region,4,129377047,129378041,995,*,995,129,0.712562814,1.024152624,0.129648241,6.09E-114,CpGisland,TRUE,NA,NRS
17261,cg11792536,-0.0000116,0.00000813,-1.425274327,0.155083971,loss,ns,-0.0000136,0.0000138,-0.982858454,0.326443555,neg,ns,0.00377881,0.004047953,0.93351136,0.351282531,pos,ns,0.454343447,-0.000179882,0.000139209,-1.292176203,0.197258543,neg,ns,0.816142902,Gm5356,Gm5356_Intergenic_upstream,8,89324464,89324513,89324464,89324465,50,+,CGTTAACCACGCTTCAATTCCCCACTATGGGTTGACATTTGAAGTACTTT,Distal Intergenic,8,89186946,89187560,615,2,Gm5356-201,-136904,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,23,23,384862,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13897,cg05725005,-0.000000368,0.0000143,-0.025718122,0.979498717,loss,ns,-0.0000239,0.0000243,-0.982797447,0.326473538,neg,ns,-0.019594563,0.007116276,-2.753485644,0.006244327,neg,ns,2.204514339,0.000693211,0.000244728,2.832576221,0.004919832,pos,ns,0.198538097,Sp9,Sp9_threeUTR,2,73276035,73276084,73276035,73276036,50,-,CGCTAGAGTCAATACCCCGGAAAAGACATTTCATGCCTAAATGAAAATCT,3' UTR,2,73271925,73277471,5547,1,Sp9-201,4110,Sp9-201;Sp9-202,Sp9;Sp9,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,10,21,381373,ENSMUSG00000068859,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
15646,cg08303653,-0.0000167,0.0000208,-0.803553675,0.422270496,loss,ns,-0.0000347,0.0000353,-0.982545357,0.326597448,neg,ns,0.075786682,0.010338909,7.33024012,2.01E-12,pos,yes,11.69665934,-0.002031244,0.000355554,-5.712896405,2.61E-08,neg,yes,0.484686348,Nfib,Nfib_Exon,4,82498558,82498607,82498558,82498559,50,+,CGCAGTTTGGCAAGGAGCCTGGATGCCCACTTCTGTTTGATTTCAGGCTT,"Exon (Nfib-201/Nfib, exon 2 of 12)",4,82290173,82505308,215136,2,Nfib-201,6701,Nfib-201;Nfib-203;Nfib-202;Nfib-205;Nfib-206;Nfib-204;Nfib-207;Nfib-209;Nfib-210;Nfib-208;Nfib-212;Nfib-211,Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,14,66,18028,ENSMUSG00000008575,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
856,cg10242548,-0.00000797,0.0000109,-0.731539398,0.465002367,loss,ns,0.0000182,0.0000185,0.982542216,0.326598992,pos,ns,0.007186177,0.005423484,1.325011245,0.186143229,pos,ns,0.730152756,-0.000334853,0.000186513,-1.795330031,0.073575022,neg,ns,0.791433776,Dmtf1,Dmtf1_threeUTR,5,9130435,9130484,9130435,9130436,50,-,CGCCCCTATTGTTGCCCAGTCATTGCCATGCTTTATCCGGAGCCTAAAAC,3' UTR,5,9118801,9161776,42976,2,Dmtf1-201,31292,Dmtf1-201;Dmtf1-209;Dmtf1-202;Dmtf1-208;Dmtf1-214;Dmtf1-212;Dmtf1-213;Dmtf1-204;Dmtf1-207;Dmtf1-210;Dmtf1-215;Dmtf1-216;Dmtf1-211;Dmtf1-205;Tmem243-202,Dmtf1;Dmtf1;Dmtf1;Dmtf1;Dmtf1;Dmtf1;Dmtf1;Dmtf1;Dmtf1;Dmtf1;Dmtf1;Dmtf1;Dmtf1;Dmtf1;Tmem243,0;0;0;0;0;0;0;0;0;-3858;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,11,23857,ENSMUSG00000042508,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20796,cg18278971,-0.0000024,0.00000161,-1.494192832,0.136142385,loss,ns,-0.00000268,0.00000273,-0.982507451,0.326616083,neg,ns,0.000752164,0.000800266,0.939891976,0.348004745,pos,ns,0.458414834,-0.0000831,0.0000275,-3.018872781,0.002747857,neg,ns,0.950892875,Them7,Them7_Intron,2,105334299,105334348,105334299,105334300,50,+,CGGTTAAAGTTAATTAAGCACTCAATAGGTTTATGGTGTTTAAATTAAAA,"Intron (Them7-201/Them7, intron 3 of 3)",2,105224320,105379796,155477,1,Them7-201,109979,Them7-201;Them7-202,Them7;Them7,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,7,74088,ENSMUSG00000055312,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16083,cg06151126,-0.00000574,0.00000343,-1.67345648,0.095246169,loss,ns,0.00000572,0.00000583,0.982472312,0.326633358,pos,ns,0.00133018,0.001706785,0.779348285,0.436369129,pos,ns,0.360145981,-0.000120998,0.0000587,-2.061436153,0.040094959,neg,ns,0.916103877,Bnc2,Bnc2_Intron,4,84367212,84367261,84367260,84367261,50,-,TATTTATAAGCGAATAGTTAACAGCTGTACCTACTGCTAAGCATTACACG,"Intron (Bnc2-201/Bnc2, intron 6 of 7)",4,84275095,84675034,399940,2,Bnc2-201,307773,Bnc2-201;Bnc2-202;Bnc2-214;Bnc2-215;Bnc2-206;Bnc2-211;Bnc2-205;Bnc2-217;Bnc2-207;Bnc2-212,Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,91,242509,ENSMUSG00000028487,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14551,cg18824846,0.0000261,0.00000535,4.88473121,0.00000166,gain,yes,0.00000893,0.00000909,0.982319416,0.326708532,pos,ns,0.009111078,0.002662064,3.422561258,0.000703659,pos,ns,3.152638054,-0.000309079,0.0000915,-3.376131592,0.000828743,neg,ns,0.346499675,Hspa2,Hspa2_Exon,12,76405157,76405206,76405157,76405158,50,+,CGACGTGTCCATCCTGACCATCGAGGATGGCATCTTCGAGGTGAAGTCCA,Promoter (<=1kb),12,76404176,76406938,2763,1,Hspa2-201,981,Hspa2-201;Hspa2-202,Hspa2;Hspa2,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,15512,ENSMUSG00000059970,conserved gene and region,12,76404926,76405509,584,*,584,56,0.630136986,0.96623039,0.095890411,1.23E-41,CpGisland,TRUE,U3,Pr-B
20476,cg26245113,0.0000272,0.00000429,6.330555146,8.56E-10,gain,yes,-0.00000716,0.00000729,-0.982262285,0.326736624,neg,ns,0.006653825,0.002136546,3.114290174,0.002016096,pos,ns,2.695488814,-0.000171186,0.0000735,-2.329827836,0.020457075,neg,ns,0.076850925,Hoxc4,Hoxc4_Intergenic_downstream,15,103061692,103061741,103061692,103061693,50,-,CGTGATTTATGACTTCAATCTTGGTTCACCAAGAGTTCACACGGCTTTCG,Distal Intergenic,15,103034395,103036852,2458,1,Hoxc4-201,27346,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,32,91,15423,ENSMUSG00000075394,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
17242,cg20265593,0.0000274,0.0000061,4.495976861,0.0000098,gain,ns,0.0000102,0.0000104,0.981866546,0.32693126,pos,ns,0.003100494,0.003033757,1.021998111,0.307578669,pos,ns,0.512043787,0.0000486,0.000104331,0.465464569,0.64192563,pos,ns,0.045214315,Nog,Nog_Exon,11,89301342,89301391,89301390,89301391,50,-,CGGAAATGATGGGGTACTGGATGGGAATCCAGCCGCAGCGCTGGCCCCCG,Promoter (<=1kb),11,89300638,89302332,1695,2,Nog-201,941,Nog-201,Nog,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,36,18121,ENSMUSG00000048616,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
17714,cg18489996,0.000111348,0.0000136,8.216653884,5.76E-15,gain,yes,-0.0000226,0.000023,-0.981865145,0.326931949,neg,ns,-0.00394213,0.006744721,-0.584476305,0.559325008,neg,ns,0.252335763,0.000381782,0.00023195,1.645965292,0.10078433,pos,ns,0.653566995,1110051M20Rik,1110051M20Rik_Intron,2,91430577,91430626,91430625,91430626,50,-,CATCACAAGAGAGACATGCAAATAACAGAAGCAAATCAAAAGACATCCCG,"Intron (1110051M20Rik-201/1110051M20Rik, intron 1 of 8)",2,91275068,91444622,169555,2,1110051M20Rik-201,13996,1110051M20Rik-201;1110051M20Rik-203;1110051M20Rik-202;1110051M20Rik-208;1110051M20Rik-206;1110051M20Rik-205;1110051M20Rik-207,1110051M20Rik;1110051M20Rik;1110051M20Rik;1110051M20Rik;1110051M20Rik;1110051M20Rik;1110051M20Rik,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,4,228356,ENSMUSG00000040591,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24772,cg25636721,-0.0000508,0.00000793,-6.404287703,5.59E-10,loss,yes,-0.0000132,0.0000135,-0.98179789,0.326965034,neg,ns,-0.012136754,0.003945526,-3.076080052,0.002284361,neg,ns,2.641235238,-0.000132397,0.000135686,-0.97575482,0.329946779,neg,ns,0.776523743,Ankrd52,Ankrd52_Exon,10,128395532,128395581,128395532,128395533,50,-,CGGTTGTAGGAAGTAAAGAGAACTGAGCACAATTCACTGGATTCTAGTGG,"Exon (Gm17201-201/Gm17201-201, exon 1 of 2)",10,128389290,128408704,19415,1,Ankrd52-202,6242,Ankrd52-201;Ankrd52-202;Slc39a5-201;Slc39a5-202;Slc39a5-204;Slc39a5-203;Slc39a5-205,Ankrd52;Ankrd52;Slc39a5;Slc39a5;Slc39a5;Slc39a5;Slc39a5,0;0;5648;4885;4936;4885;5629,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,12,237615,ENSMUSG00000014498,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4683,cg08293152,-0.0000759,0.0000105,-7.206723833,4.39E-12,loss,yes,0.0000176,0.0000179,0.981746088,0.326990519,pos,ns,-0.015631474,0.005240073,-2.983064178,0.003080376,neg,ns,2.511396313,0.000529767,0.000180206,2.939792418,0.003531229,pos,ns,0.836528659,Mecom,Mecom_Intron,3,30106638,30106687,30106638,30106639,50,+,CGACTGCTCGGCGCCAACCACAACATGCTACCCACCGTGAGAGAGCAGGA,"Intron (Mecom-212/Mecom, intron 1 of 15)",3,29951299,30509733,558435,2,Mecom-212,403046,Mecom-212;Mecom-203;Mecom-210;Mecom-213;Mecom-207;Mecom-208;Mecom-211,Mecom;Mecom;Mecom;Mecom;Mecom;Mecom;Mecom,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,80,14013,ENSMUSG00000027684,conserved gene and region,3,30106598,30106734,137,*,137,14,0.613138686,1.097254005,0.102189781,3.95E-11,CpGisland,TRUE,U9,En-Pp
25408,cg08305188,-0.00000956,0.00000258,-3.7012718,0.000253804,loss,ns,-0.00000431,0.00000439,-0.981663141,0.327031329,neg,ns,-0.002218433,0.001285643,-1.725544004,0.085425998,neg,ns,1.06840994,0.0000504,0.0000442,1.139899178,0.255208271,pos,ns,0.94830949,Cux1,Cux1_threeUTR,5,136274558,136274607,136274606,136274607,50,+,TCTATATGCACCTTGGCCTATGGCGATTTTGCCCTGTGGCCCGCAGGGCG,3' UTR,5,136248135,136360018,111884,2,Cux1-205,85411,Cux1-205;Cux1-207;Cux1-211;Cux1-203;Cux1-213;Cux1-201;Cux1-204;Cux1-209;Cux1-212;Cux1-206;Cux1-202,Cux1;Cux1;Cux1;Cux1;Cux1;Cux1;Cux1;Cux1;Cux1;Cux1;Cux1,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,8,21,13047,ENSMUSG00000029705,conserved gene and region,5,136274581,136275256,676,*,676,67,0.721893491,0.760800914,0.099112426,1.01E-50,CpGisland,TRUE,U10,Tr-S
11807,cg19309110,0.000126508,0.0000276,4.590598499,0.00000643,gain,ns,-0.000046,0.0000468,-0.981580604,0.327071941,neg,ns,0.084038672,0.013715953,6.127074806,2.71E-09,pos,ns,8.56654678,-0.002240538,0.00047169,-4.75001642,0.00000311,neg,ns,0.641522931,Eif3a,Eif3a_Exon,19,60773938,60773987,60773938,60773939,50,-,CGTTCCAGTTGGAAAGCATCAACAAAAGGAACCAAAGAAGTCAAACGAGA,"Exon (Eif3a-201/Eif3a, exon 10 of 22)",19,60761117,60790643,29527,2,Eif3a-201,16656,Eif3a-201;Eif3a-205;Eif3a-204;Eif3a-202,Eif3a;Eif3a;Eif3a;Eif3a,0;0;-1787;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,13669,ENSMUSG00000024991,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9314,cg10737323,0.0000102,0.00000734,1.38673125,0.166520097,gain,ns,-0.0000122,0.0000125,-0.981515891,0.327103785,neg,ns,0.003846323,0.00365331,1.052832362,0.29323777,pos,ns,0.532780091,-0.000344444,0.000125637,-2.741580468,0.006469506,neg,ns,0.783777264,Nr4a3,Nr4a3_Exon,4,48071029,48071078,48071077,48071078,50,+,ACTTGTCCTGCATCGACTTCAGTGCCTTCGTGGATTTGGGGAGTGGCTCG,"Exon (Nr4a3-201/Nr4a3, exon 7 of 8)",4,48045153,48086445,41293,1,Nr4a3-201,25876,Nr4a3-201;Nr4a3-203,Nr4a3;Nr4a3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,20,18124,ENSMUSG00000028341,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9908,cg02933937,-0.00000869,0.00000602,-1.443826929,0.149797495,loss,ns,-0.00001,0.0000102,-0.98131839,0.327200983,neg,ns,-0.000238758,0.002996023,-0.079691515,0.936534027,neg,ns,0.028476439,-0.000215292,0.000103033,-2.089543442,0.037473748,neg,ns,0.953084408,Gm46574,Gm46574_Intergenic_upstream,17,51536749,51536798,51536749,51536750,50,-,CGAAACACACCTGTACTTTTTATGTAATTTATTGACTGGTTATAGATGCT,Distal Intergenic,17,51484292,51484721,430,2,Gm46574-201,-52077,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,19,108168316,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22892,cg07932605,0.000106286,0.0000125,8.502005636,8.00E-16,gain,yes,-0.0000208,0.0000212,-0.981263535,0.327227982,neg,ns,0.004943846,0.006222042,0.794569616,0.427471764,pos,ns,0.369092567,-0.0000584,0.000213976,-0.272870818,0.785134201,neg,ns,0.175996152,Meis2,Meis2_Promoter,2,116067882,116067931,116067930,116067931,50,+,AACAGTTTGATTAAATGAGCCATCATAACAATGATGTCTGCGGGAAATCG,Promoter (2-3kb),2,115863064,116065839,202776,2,Meis2-206,-2043,Meis2-201;Meis2-203;Meis2-205;Meis2-206;Meis2-204;Meis2-202;Meis2-209,Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,6,97,17536,ENSMUSG00000027210,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21666,cg13445226,0.000000247,0.00000204,0.121254576,0.903567955,gain,ns,-0.0000034,0.00000347,-0.98123218,0.327243416,neg,ns,-0.001043051,0.001015129,-1.027506363,0.304983148,neg,ns,0.515724158,0.0000533,0.0000349,1.52757299,0.127638244,pos,ns,0.966090692,Zfhx3,Zfhx3_Exon,8,108794429,108794478,108794429,108794430,50,+,CGCTGCGAGGTGTGTAACTACTCCACAACTACCAAAGGCAACCTCAGTAT,"Exon (Zfhx3-204/Zfhx3, exon 8 of 16)",8,107942644,108961630,1018987,1,Zfhx3-204,851785,Zfhx3-204;Zfhx3-202;Zfhx3-201,Zfhx3;Zfhx3;Zfhx3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,46,177,11906,ENSMUSG00000038872,conserved gene and region,8,108794313,108794435,123,*,123,11,0.650406504,0.845625,0.089430894,3.56E-08,CpGisland,TRUE,U10,Tr-S
2504,cg06710458,-0.00000376,0.00000287,-1.31128815,0.190730842,loss,ns,0.00000478,0.00000488,0.981029548,0.327343167,pos,ns,0.002685268,0.001428884,1.879276946,0.061144638,pos,ns,1.21364162,-0.000127655,0.0000491,-2.597816405,0.009829705,neg,ns,0.932435425,Pkhd1,Pkhd1_Intron,1,20106621,20106670,20106621,20106622,50,-,CGATATGTTATAATAGTGCAATAAATCTGTTAGCTTAAAATCGAATCTCC,"Intron (Pkhd1-201/Pkhd1, intron 61 of 66)",1,20057779,20618064,560286,2,Pkhd1-201,511394,Pkhd1-201,Pkhd1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,25,241035,ENSMUSG00000043760,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5694,cg10799583,-0.00000821,0.00000944,-0.870518177,0.38469088,loss,ns,-0.0000157,0.000016,-0.980982185,0.327366486,neg,ns,-0.008603115,0.004696561,-1.831790466,0.06794203,neg,ns,1.167861484,-0.0000868,0.000161514,-0.537605297,0.591235279,neg,ns,0.897202387,Ldb3,Ldb3_Exon,14,34579210,34579259,34579258,34579259,50,+,ACTTGATCTTGTTCTGGGCTTCCAGGTGGGTCATGGTGTCTGTGTTGACG,"Exon (Ldb3-201/Ldb3, exon 3 of 14)",14,34526603,34588664,62062,2,Ldb3-201,9405,Ldb3-201;Ldb3-205;Ldb3-202;Ldb3-204;Ldb3-208;Ldb3-207;Ldb3-203;Ldb3-206,Ldb3;Ldb3;Ldb3;Ldb3;Ldb3;Ldb3;Ldb3;Ldb3,0;0;0;0;0;0;0;-2216,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,24131,ENSMUSG00000021798,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20034,cg08515252,-0.00000745,0.00000926,-0.80469405,0.421612958,loss,ns,0.0000154,0.0000157,0.980848778,0.327432173,pos,ns,0.00852241,0.004610922,1.848309331,0.065509852,pos,ns,1.183693382,-0.000352305,0.000158569,-2.221773874,0.027020388,neg,ns,0.870429711,Atxn7l3,Atxn7l3_threeUTR,11,102289456,102289505,102289504,102289505,50,+,CAATGACCCCAGCATGCGGTAATGCCAGGCGGGTGGCCCCTGGGCATGCG,3' UTR,11,102289300,102293444,4145,2,Atxn7l3-206,3939,Atxn7l3-206;Atxn7l3-205;Atxn7l3-204;Atxn7l3-203;Atxn7l3-201;Atxn7l3-202;Tmub2-201;Tmub2-203;Tmub2-202;Tmub2-204;Tmub2-205,Atxn7l3;Atxn7l3;Atxn7l3;Atxn7l3;Atxn7l3;Atxn7l3;Tmub2;Tmub2;Tmub2;Tmub2;Tmub2,0;0;0;0;0;0;4525;4517;4517;4505;4260,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,7,217218,ENSMUSG00000059995,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23015,cg20876490,0.0000418,0.0000178,2.349021546,0.01945033,gain,ns,0.0000297,0.0000303,0.980778583,0.327466739,pos,ns,0.025554984,0.008867001,2.882032391,0.004227074,pos,ns,2.373960108,-0.000440683,0.000304935,-1.445167771,0.149420848,neg,ns,0.676697023,Tmco5,Tmco5_Exon,2,116850373,116850422,116850421,116850422,50,+,TAAACCTCTCTCAGACAAATTTTGCATTGTTTTTTGTGTCAGTTTTATCG,"Exon (Gm13990-201/Gm13990-201, exon 4 of 4)",2,116878691,116892181,13491,1,Tmco5-202,-28269,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,14,67356,ENSMUSG00000027355,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16907,cg17921963,0.0000129,0.00000309,4.156382893,0.0000419,gain,ns,-0.00000516,0.00000526,-0.980667335,0.327521526,neg,ns,-0.002563945,0.00154008,-1.664812479,0.09696049,neg,ns,1.0134052,0.000101923,0.000053,1.924420081,0.055217062,pos,ns,0.931686806,Eif4e2,Eif4e2_Exon,1,87232395,87232444,87232443,87232444,50,-,TTTGCCAGGGCCTGGGAGGAGTTTCATGGCCTGGTGAACAGCAGCGGCCG,"Exon (Eif4e2-207/Eif4e2, exon 7 of 8)",1,87213914,87234711,20798,1,Eif4e2-201,18481,Eif4e2-206;Eif4e2-201;Eif4e2-202;Eif4e2-207;Eif4e2-204,Eif4e2;Eif4e2;Eif4e2;Eif4e2;Eif4e2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,6,26987,ENSMUSG00000026254,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19587,cg15538708,-0.00000105,0.0000103,-0.101533421,0.919192668,loss,ns,-0.0000172,0.0000176,-0.98060722,0.327551134,neg,ns,-0.014179534,0.005143877,-2.756584794,0.006186884,neg,ns,2.208528029,0.000493908,0.000176898,2.792057417,0.005562626,pos,ns,0.236853097,Hnrnpd,Hnrnpd_fiveUTR,5,99976506,99976555,99976554,99976555,50,+,ATACAGAAATAAAATTTAAAAGTTTTACCATTCTTCCCGCTGTGCCGTCG,Promoter (<=1kb),5,99961003,99976551,15549,2,Hnrnpd-208,0,Hnrnpd-211;Hnrnpd-201;Hnrnpd-203;Hnrnpd-202;Hnrnpd-208;Hnrnpd-205;Hnrnpd-210;Hnrnpd-207,Hnrnpd;Hnrnpd;Hnrnpd;Hnrnpd;Hnrnpd;Hnrnpd;Hnrnpd;Hnrnpd,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,8,11991,ENSMUSG00000000568,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
2461,cg21710364,-0.00000992,0.00000586,-1.694395135,0.091194528,loss,ns,0.00000976,0.00000995,0.980418946,0.327643873,pos,ns,0.008500374,0.002915331,2.915749416,0.003807063,pos,ns,2.419409904,-0.000468548,0.000100258,-4.673424637,0.00000442,neg,ns,0.821239368,Gm12353,Gm12353_Exon,4,19641765,19641814,19641813,19641814,50,+,ATAGCTCCCTGCAATTGGTTCCGCTGAGATTGCCACTGTTCAAAATTTCG,"Exon (Wwp1-202/Wwp1, exon 11 of 25)",4,19605451,19651130,45680,1,Gm12353-201,36314,Gm12353-201;Wwp1-202;Wwp1-201,Gm12353;Wwp1;Wwp1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11919,cg23641297,-0.00000278,0.00000194,-1.43631586,0.151920854,loss,ns,0.00000323,0.00000329,0.980343316,0.327681132,pos,ns,-0.001598679,0.000964864,-1.656895885,0.098552218,neg,ns,1.006333598,-0.0000101,0.0000332,-0.303218445,0.761926778,neg,ns,0.96572008,Tank,Tank_Intergenic_downstream,2,61663697,61663746,61663745,61663746,50,+,AAAGTAGTGTAATTGTAATTCACGCCATCAGGGTCTATCGCTGATAGACG,Distal Intergenic,2,61643831,61649977,6147,1,Tank-211,19866,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,17,21353,ENSMUSG00000064289,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25865,cg04338778,0.00000596,0.00000221,2.70281512,0.007254496,gain,ns,0.00000367,0.00000375,0.980113546,0.327794343,pos,ns,0.003190612,0.0010983,2.905045134,0.003936085,pos,ns,2.404935555,-0.0000332,0.0000378,-0.878077826,0.380581522,neg,ns,0.048994924,Pax7,Pax7_Intron,4,139825851,139825900,139825851,139825852,50,-,CGTTTGTGCTTCAAACTCTGAGAGTGAGAACTGATTGCGGATAAATAGTT,"Intron (Pax7-201/Pax7, intron 4 of 8)",4,139737062,139833528,96467,2,Pax7-201,7628,Pax7-201;Pax7-202,Pax7;Pax7,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,27,18509,ENSMUSG00000028736,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
18938,cg21596317,0.0000188,0.00000251,7.492255389,7.12E-13,gain,yes,-0.00000418,0.00000427,-0.980057246,0.327822086,neg,ns,0.001321189,0.00125025,1.056739884,0.291453118,pos,ns,0.535431294,0.0000117,0.000043,0.273019449,0.785020052,pos,ns,0.045743388,Pam,Pam_fiveUTR,1,97977240,97977289,97977240,97977241,50,-,CGTCAGTCATCATTCAGAACCTGCAAAAATAGAAGCAGATAATGGATGAC,Promoter (<=1kb),1,97821100,97977255,156156,2,Pam-210,0,Pam-201;Pam-202;Pam-210;Pam-205;Pam-211,Pam;Pam;Pam;Pam;Pam,0;0;0;-172;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,1,18484,ENSMUSG00000026335,conserved gene and region,1,97976909,97977277,369,*,369,44,0.72899729,0.899003322,0.119241192,2.21E-37,CpGisland,TRUE,U2,Pr-W
18004,cg26422625,0.00000658,0.0000143,0.45848859,0.646922715,gain,ns,0.0000239,0.0000244,0.980044377,0.327828428,pos,ns,0.01753474,0.007140378,2.45571592,0.014608969,pos,ns,1.835380427,-0.000417554,0.000245557,-1.700436231,0.090051812,neg,ns,0.707880166,Arx,Arx_Intergenic_downstream,X,93300282,93300331,93300282,93300283,50,-,CGCTAAAGACCCCCTGACTTCCAGCAAGTCCACATTAAACATGTGACATG,Downstream (1-2kb),20,93286510,93298062,11553,1,Arx-202,13821,Arx-201;Arx-202;Pola1-201,Arx;Arx;Pola1,0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,8,32,11878,ENSMUSG00000035277,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
26823,cg08167858,-0.0000179,0.00000667,-2.679611389,0.00776449,loss,ns,0.0000111,0.0000113,0.979692867,0.328001683,pos,ns,0.007665623,0.003321384,2.307960938,0.021659427,pos,ns,1.664353034,-0.000339123,0.000114222,-2.968980011,0.003220975,neg,ns,0.118965134,Id1,Id1_Intergenic_downstream,2,152739444,152739493,152739492,152739493,50,+,TAACCTGAGCATCCCCAGGTGTACGGAGGCGCCTGGCTGTCTGGGGCCCG,Distal Intergenic,2,152736251,152737410,1160,1,Id1-202,3193,Id1-201;Id1-202,Id1;Id1,3193;3193,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,5,15901,ENSMUSG00000042745,mapped to different genes,2,152739337,152739589,253,*,253,25,0.707509881,0.795197385,0.098814229,3.23E-19,CpGisland,TRUE,U6,En-Sp
15285,cg18126093,-0.0000118,0.00000311,-3.786014899,0.000183796,loss,ns,-0.00000518,0.00000529,-0.979686669,0.328004739,neg,ns,-0.005783049,0.001549012,-3.733379361,0.000224747,neg,ns,3.648305576,0.000089,0.0000533,1.670227634,0.095883653,pos,ns,0.935739331,Actn1,Actn1_Exon,12,80183532,80183581,80183580,80183581,50,+,AAGTCCTCCAGCTTCTGTTGCATGGCATGCATGGTGTTCTCGGGCACCCG,"Exon (Actn1-201/Actn1, exon 10 of 21)",12,80167547,80260371,92825,2,Actn1-201,76790,Actn1-201;Actn1-202;Actn1-203;Actn1-204,Actn1;Actn1;Actn1;Actn1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,10,109711,ENSMUSG00000015143,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21839,cg01713546,0.00000138,0.000007,0.196988569,0.843965571,gain,ns,0.0000117,0.0000119,0.979652292,0.328021686,pos,ns,-0.006335367,0.003484576,-1.818117103,0.070011267,neg,ns,1.154832063,0.000132046,0.000119834,1.101909108,0.271355962,pos,ns,0.753007223,Lmo1,Lmo1_Intergenic_upstream,7,109241134,109241183,109241182,109241183,50,+,TTAATTGGACAATTATTCAAACTGAAAAACCTGCACAGGAAACGAAGGCG,Distal Intergenic,7,109138675,109175207,36533,2,Lmo1-202,-65927,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,34,66,109594,ENSMUSG00000036111,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16667,cg06395838,0.0000357,0.00000653,5.465755444,9.49E-08,gain,yes,-0.0000109,0.0000111,-0.979293409,0.328198644,neg,ns,0.011918992,0.003251507,3.665682017,0.000290136,pos,ns,3.537399003,-0.0000718,0.000111819,-0.642059428,0.521309096,neg,ns,0.268135099,Tbx4,Tbx4_Intron,11,85894008,85894057,85894056,85894057,50,+,CAAAGCCAATTGCCCTCACTCTGTATACAGAGCGTCAGAGCCCAGTGGCG,"Intron (Tbx4-203/Tbx4, intron 3 of 8)",11,85886422,85916095,29674,1,Tbx4-203,7586,Tbx4-203;Tbx4-201;Tbx4-202,Tbx4;Tbx4;Tbx4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,9,21387,ENSMUSG00000000094,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
7733,cg12496842,0.0000402,0.0000123,3.259124628,0.001241737,gain,ns,0.0000205,0.0000209,0.979035719,0.328325744,pos,ns,0.01126377,0.006132724,1.836666793,0.067216414,pos,ns,1.172524661,-0.000351136,0.000210904,-1.664911729,0.096940666,neg,ns,0.488917284,Arhgap15,Arhgap15_Intron,2,43990080,43990129,43990080,43990081,50,+,CGGAGCCAAGGCAGGCTTTGGAGGCAGAAAGGAGGTTACAATCTGGACTT,"Intron (Arhgap15-203/Arhgap15, intron 6 of 14)",2,43748824,44395953,647130,1,Arhgap15-203,241256,Arhgap15-203;Arhgap15-202;Arhgap15-201,Arhgap15;Arhgap15;Arhgap15,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,72,78,76117,ENSMUSG00000049744,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14133,cg26708100,0.000000985,0.00000059,1.668370555,0.096251856,gain,ns,-0.000000981,0.000001,-0.978852498,0.328416133,neg,ns,-0.000309699,0.000293718,-1.054407657,0.292517413,neg,ns,0.533848276,0.00000212,0.0000101,0.209861035,0.83391399,pos,ns,0.014918731,Hoxd10,Hoxd10_Exon,2,74694224,74694273,74694224,74694225,50,-,CGAGCGCCGCCTAGAGATCAGTAAGAGCGTTAACCTCACCGACAGGCAGG,"Exon (Hoxd10-201/Hoxd10, exon 2 of 2)",2,74691924,74695105,3182,1,Hoxd10-201,2300,Hoxd10-201;Hoxd9-201,Hoxd10;Hoxd9,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,21,24,15430,ENSMUSG00000050368,conserved gene and region,2,74694222,74694348,127,*,127,12,0.519685039,1.400735294,0.094488189,3.59E-09,CpGisland,TRUE,U13,Hc-P
20362,cg14644523,-0.00000869,0.0000111,-0.784687401,0.433236096,loss,ns,-0.0000184,0.0000188,-0.978791881,0.328446041,neg,ns,-0.01638467,0.00551273,-2.972151763,0.003188809,neg,ns,2.496371539,0.000401553,0.000189582,2.11809078,0.034962905,pos,ns,0.129055769,Hoxc5,Hoxc5_fiveUTR,15,103013847,103013896,103013847,103013848,50,+,CGGCTTCCATCACTAACCTCCCGGAGGTCATCAAGCCAAATTTATGAGTG,5' UTR,15,102967443,103015676,48234,1,Hoxc5-202,46404,Hoxc5-202;Hoxc5-201;Hoxc6-202;Hoxc6-203;Hoxc6-201,Hoxc5;Hoxc5;Hoxc6;Hoxc6;Hoxc6,0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,13,134,15424,ENSMUSG00000022485,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
14798,cg08482423,-0.000000236,0.00000172,-0.137143201,0.891006633,loss,ns,0.00000286,0.00000292,0.978745086,0.328469131,pos,ns,-0.001233664,0.000854741,-1.443317902,0.149940673,neg,ns,0.824080543,0.00002,0.0000294,0.681490174,0.496070169,pos,ns,0.952628225,Zfp385b,Zfp385b_Intron,2,77746682,77746731,77746730,77746731,50,-,AATATTTCAAAATGCAAACTGACATTTAATTATACAAAAATCTCCTTCCG,"Intron (Zfp385b-204/Zfp385b, intron 1 of 9)",2,77411100,77816816,405717,2,Zfp385b-204,70085,Zfp385b-204;Zfp385b-202,Zfp385b;Zfp385b,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,3,241494,ENSMUSG00000027016,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20892,cg24448763,-0.00000311,0.00000254,-1.226453178,0.220958927,loss,ns,-0.00000422,0.00000431,-0.978576662,0.328552243,neg,ns,-0.000899982,0.001262024,-0.71312591,0.476304316,neg,ns,0.322115483,-0.0000463,0.0000434,-1.067391475,0.286625622,neg,ns,0.923659429,Dnhd1,Dnhd1_threeUTR,7,105683936,105683985,105683984,105683985,50,+,TGCAGCAGCTGATGGCAGCAGCATTGGCAGAGCTGGAAGGCCTGCTTGCG,3' UTR,7,105650827,105721799,70973,1,Dnhd1-203,33109,Dnhd1-203;Dnhd1-201;Gm45799-204,Dnhd1;Dnhd1;Gm45799,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,77505,ENSMUSG00000030882,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11031,cg03859041,0.00010792,0.0000133,8.133702888,1.01E-14,gain,yes,-0.0000221,0.0000225,-0.978502786,0.328588703,neg,ns,0.043552802,0.006603762,6.595150295,1.83E-10,pos,yes,9.737073029,-0.001173951,0.000227103,-5.169248825,0.000000422,neg,yes,0.272076615,Habp2,Habp2_threeUTR,19,56320588,56320637,56320588,56320589,50,-,CGAGCAAGCAGTCAGCACAGCCTGGGCTGCCCTGGCCCGGGATTGATGTA,3' UTR,19,56287922,56320822,32901,1,Habp2-202,32666,Habp2-201;Habp2-202;Habp2-207;Habp2-206;Habp2-203;Habp2-205;Nrap-205;Nrap-202;Nrap-201;Nrap-203;Nrap-206;Nrap-204,Habp2;Habp2;Habp2;Habp2;Habp2;Habp2;Nrap;Nrap;Nrap;Nrap;Nrap;Nrap,33451;0;32592;32592;8774;7640;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,5,226243,ENSMUSG00000025075,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5914,cg21751646,-0.0000726,0.0000178,-4.068567216,0.0000601,loss,ns,0.0000297,0.0000303,0.978501914,0.328589133,pos,ns,-0.001196911,0.00888233,-0.134751873,0.892895506,neg,ns,0.049199363,0.0000703,0.000305463,0.229984736,0.818255312,pos,ns,0.601923603,Gm7733,Gm7733_Intergenic_downstream,3,35225476,35225525,35225524,35225525,50,+,TGACATTCATGCTTAACAGAAAATGATGAATCCATTAGCAACTCCTTCCG,Distal Intergenic,3,35536882,35537800,919,2,Gm7733-201,312275,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,14,15,665655,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25766,cg15880053,0.000118297,0.00000936,12.63751552,8.23E-30,gain,yes,-0.0000156,0.0000159,-0.978479089,0.328600399,neg,ns,0.015821615,0.004658941,3.395968137,0.000772959,pos,ns,3.111843363,-0.000211282,0.000160221,-1.318692507,0.188245292,neg,ns,0.734301414,Uncx,Uncx_Promoter,5,139537006,139537055,139537006,139537007,50,-,CGGATGTGCTACTAAAACTCTTGGTTAGTTAATTAGTGTCTGAACTGCGG,Promoter (6-7kb),5,139543494,139548179,4686,1,Uncx-201,-6488,NA,NA,NA,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,22,88,22255,ENSMUSG00000029546,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
27348,cg24910038,-0.00000696,0.00000381,-1.825730119,0.068852841,loss,ns,-0.00000634,0.00000648,-0.978471843,0.328603975,neg,ns,-0.002873859,0.001898281,-1.513926855,0.131063253,neg,ns,0.882519057,0.000107889,0.0000653,1.652662907,0.099411873,pos,ns,0.89791084,Cdh22,Cdh22_Intron,2,165173004,165173053,165173052,165173053,50,+,CCATTTGGAAGATTGAATGGCCCATAAACATTTTCATATTTCATTAGCCG,"Intron (Cdh22-201/Cdh22, intron 2 of 11)",2,165111507,165234853,123347,2,Cdh22-201,61800,Cdh22-201;Cdh22-202,Cdh22;Cdh22,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,23,104010,ENSMUSG00000053166,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6148,cg24527140,-0.0000247,0.0000141,-1.744434431,0.08207445,loss,ns,0.0000235,0.000024,0.978383079,0.328647788,pos,ns,0.007642249,0.007034283,1.086428924,0.278133322,pos,ns,0.555746977,-0.000275369,0.000241908,-1.138317559,0.255866852,neg,ns,0.534355043,Tenm2,Tenm2_Intron,11,36152785,36152834,36152785,36152786,50,-,CGGGTTAAAAATGATGCAGAGCATGCTGGGGTGTGTTAAAAACATGACAT,"Intron (Tenm2-202/Tenm2, intron 11 of 30)",11,36006656,37235882,1229227,2,Tenm2-202,1083048,Tenm2-202;Tenm2-208;Tenm2-201;Tenm2-204;Tenm2-205,Tenm2;Tenm2;Tenm2;Tenm2;Tenm2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,47,84,23964,ENSMUSG00000049336,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17227,cg05506584,-0.000000738,0.00000112,-0.659884748,0.509817755,loss,ns,-0.00000186,0.0000019,-0.97825758,0.328709739,neg,ns,-0.000210403,0.000556886,-0.377820986,0.705822142,neg,ns,0.151304721,0.00000445,0.0000192,0.232110029,0.816605707,pos,ns,0.036009772,Nog,Nog_Intergenic_downstream,11,89298919,89298968,89298919,89298920,50,-,CGTTATTTGGGTATTTGTCAGAACTTAACAAATATACATGGGGACGGCAG,Distal Intergenic,11,89300638,89302332,1695,2,Nog-201,3413,Nog-201,Nog,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,36,18121,ENSMUSG00000048616,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
8639,cg11970204,0.0000579,0.0000104,5.552419857,6.06E-08,gain,yes,-0.0000173,0.0000177,-0.978166889,0.328754511,neg,ns,0.008724339,0.005187759,1.681716327,0.093630909,pos,ns,1.028580759,-0.0000258,0.000178407,-0.144338461,0.885326998,neg,ns,0.552362532,Btrc,Btrc_Intron,19,45476272,45476321,45476272,45476273,50,+,CGGCAGGAGTCCTACTTGCCTAATCTTACCGGTGGGAGCAAGCGGCTGTT,"Intron (Btrc-204/Btrc, intron 1 of 2)",19,45363734,45507736,144003,1,Btrc-204,112538,Btrc-204;Btrc-201;Btrc-210;Btrc-202;Btrc-203;Btrc-209,Btrc;Btrc;Btrc;Btrc;Btrc;Btrc,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,63,98,12234,ENSMUSG00000025217,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
6942,cg14001847,0.0000566,0.00000631,8.971935037,2.85E-17,gain,yes,-0.0000105,0.0000107,-0.978075325,0.32879972,neg,ns,0.007270272,0.003138703,2.31633034,0.021192123,pos,ns,1.673825542,-0.000116478,0.00010794,-1.079104058,0.281380233,neg,ns,0.094637703,Tmem178b,Tmem178b_Exon,6,39873171,39873220,39873171,39873172,50,-,CGGACGCCAGGAAGCACAGGGACAGGTGCAAGGCCTTCAACACCCGCCGG,"Exon (Tmem178b-204/Tmem178b, exon 1 of 4)",6,39871461,40245772,374312,1,Tmem178b-204,1710,Tmem178b-204;Tmem178b-203,Tmem178b;Tmem178b,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,7,434008,ENSMUSG00000057716,conserved gene and region,6,39872653,39873366,714,*,714,68,0.665266106,0.860790015,0.095238095,3.30E-50,CpGisland,TRUE,U3,Pr-B
24542,cg00079224,-0.0000018,0.00000647,-0.277724443,0.781409021,loss,ns,0.0000107,0.000011,0.978067146,0.328803758,pos,ns,0.006684339,0.003218162,2.07706752,0.038618562,pos,ns,1.413203905,-0.0000646,0.000110672,-0.583316109,0.56010464,neg,ns,0.881089998,Taok2,Taok2_threeUTR,7,126869461,126869510,126869509,126869510,50,+,GCGGCAGGACAAAGCAGACAGAGGCAGCCTGGGCCAAAGGCACAGTTCCG,3' UTR,7,126865678,126871641,5964,2,Taok2-205,2131,Hirip3-201;Hirip3-204;Hirip3-205;Taok2-205;Taok2-201;Taok2-203;Taok2-202,Hirip3;Hirip3;Hirip3;Taok2;Taok2;Taok2;Taok2,7489;5618;5045;0;0;-2205;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,11,381921,ENSMUSG00000059981,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26169,cg10915461,-0.00000222,0.000000979,-2.268089067,0.024011509,loss,ns,0.00000163,0.00000166,0.978033972,0.328820138,pos,ns,0.0000158,0.00048719,0.032479943,0.974110213,pos,ns,0.011391903,0.0000257,0.0000168,1.531494315,0.126667091,pos,ns,0.024360342,Lmo4,Lmo4_Promoter,3,144205573,144205622,144205573,144205574,50,+,CGACCCTCAGCCACTGGGCGGCCGGATTGTTCAGGCGGAATAATAAAACC,Promoter (<=1kb),3,144188683,144205220,16538,2,Lmo4-207,-353,Lmo4-203;Lmo4-201;Lmo4-202;Lmo4-207;Lmo4-208;Lmo4-205;Lmo4-204,Lmo4;Lmo4;Lmo4;Lmo4;Lmo4;Lmo4;Lmo4,0;0;0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,5,54,16911,ENSMUSG00000028266,conserved gene and region,3,144205552,144205890,339,*,339,40,0.734513274,0.888597641,0.1179941,8.05E-34,CpGisland,TRUE,U1,Pr-A
19136,cg12830630,0.00000798,0.00000723,1.103186394,0.270801875,gain,ns,0.000012,0.0000123,0.97803075,0.328821729,pos,ns,-0.002898496,0.003599151,-0.805327567,0.421247934,neg,ns,0.375462216,-0.0000346,0.000123775,-0.279748249,0.779857223,neg,ns,0.775750983,Adcy6,Adcy6_Exon,15,98600435,98600484,98600483,98600484,50,+,TCATGTCTTCTTTTTTTGTGTTGATGTCTTCTTTCATCTCCATGGCAACG,"Exon (Adcy6-201/Adcy6, exon 4 of 22)",15,98589973,98607633,17661,2,Adcy6-201,7149,Adcy6-201;Adcy6-202;Adcy6-207;Adcy6-205;Adcy6-204;Adcy6-203,Adcy6;Adcy6;Adcy6;Adcy6;Adcy6;Adcy6,0;0;0;0;9592;9548,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,11512,ENSMUSG00000022994,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25269,cg12448065,-0.00000536,0.00000155,-3.4535229,0.000630295,loss,ns,0.00000258,0.00000264,0.978014261,0.328829871,pos,ns,-0.001285573,0.000772845,-1.663429407,0.097237074,neg,ns,1.012168117,0.0000702,0.0000266,2.641123472,0.008681934,pos,ns,0.961947876,Pdik1l,Pdik1l_Exon,4,134279020,134279069,134279068,134279069,50,+,TCATATCTCCTCCGTCACAAAAATCCATCACAAACCACAAATAATAGGCG,"Exon (Pdik1l-203/Pdik1l, exon 4 of 4)",4,134275002,134287239,12238,2,Pdik1l-203,8170,Pdik1l-203;Pdik1l-201;Pdik1l-202;Pdik1l-206;Pdik1l-204;Pdik1l-205,Pdik1l;Pdik1l;Pdik1l;Pdik1l;Pdik1l;Pdik1l,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,8,230809,ENSMUSG00000050890,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19889,cg07636454,-0.0000213,0.00000702,-3.03040424,0.002648002,loss,ns,0.0000117,0.0000119,0.977849415,0.328911276,pos,ns,-0.004438163,0.003495028,-1.269850391,0.205090292,neg,ns,0.688054897,0.0000406,0.000120194,0.338045963,0.735557363,pos,ns,0.761672258,Gm43103,Gm43103_Intergenic_downstream,5,101497579,101497628,101497627,101497628,50,-,CTGATGGGCTAGGCCCGGGCCTGGCACTTCACCAGTGCAAGAATCATACG,Distal Intergenic,5,101505528,101506329,802,2,Gm43103-201,8750,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,10,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13107,cg08831341,-0.0000122,0.00000494,-2.462337228,0.014347189,loss,ns,0.0000082,0.00000839,0.977717024,0.328976663,pos,ns,-0.003312033,0.002456965,-1.348018298,0.178636685,neg,ns,0.748029348,0.000337873,0.0000845,3.998737119,0.0000797,pos,ns,0.831629199,Tcf4,Tcf4_Intron,18,69499300,69499349,69499300,69499301,50,-,CGTTGTTGCACGGCTGCGCTGCACCTGGGCCCTTCATCTGTGATTGATTG,"Intron (Tcf4-259/Tcf4, intron 5 of 6)",18,69343356,69564082,220727,1,Tcf4-259,155944,Tcf4-259;Tcf4-201;Tcf4-207;Tcf4-210;Tcf4-240;Tcf4-254;Tcf4-246;Tcf4-206;Tcf4-202;Tcf4-257;Tcf4-232;Tcf4-248;Tcf4-231;Tcf4-205;Tcf4-253;Tcf4-233;Tcf4-238;Tcf4-245;Tcf4-249;Tcf4-219;Tcf4-235;Tcf4-227;Tcf4-250;Tcf4-229;Tcf4-260;Tcf4-226;Tcf4-216;Tcf4-256,Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,42,66,21413,ENSMUSG00000053477,conserved gene and region,18,69499180,69499317,138,*,138,10,0.630434783,0.820451843,0.072463768,0.00000132,CpGisland,TRUE,U15,NS
17555,cg01770127,-0.0000251,0.00000481,-5.208668009,0.000000347,loss,yes,-0.00000799,0.00000817,-0.977632197,0.329018563,neg,ns,-0.006658837,0.002394342,-2.781072141,0.005749555,neg,ns,2.240365746,0.0000648,0.0000823,0.786528357,0.432158848,pos,ns,0.910193646,Kif21a,Kif21a_Exon,15,90956457,90956506,90956505,90956506,50,+,TCACTGCTATCTGCATACAGCAATTCCATCTGAGTGGTGGTTCTCCTTCG,"Exon (Kif21a-203/Kif21a, exon 27 of 37)",15,90933276,91049948,116673,2,Kif21a-203,93442,Gm49545-201;Kif21a-203;Kif21a-205;Kif21a-202;Kif21a-204;Kif21a-201;Kif21a-206,Gm49545;Kif21a;Kif21a;Kif21a;Kif21a;Kif21a;Kif21a,-1490;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,16564,ENSMUSG00000022629,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27722,cg13079992,0.0000106,0.00000255,4.168242798,0.0000399,gain,ns,0.00000424,0.00000433,0.977628085,0.329020595,pos,ns,0.002988008,0.001269744,2.353236881,0.019235144,pos,ns,1.715904549,-0.0000573,0.0000437,-1.312900494,0.190187541,neg,ns,0.957071717,Taf4,Taf4_Exon,2,179913479,179913528,179913527,179913528,50,-,GTCTCACGTTCATTTTCTAAACAAAATATGAGGTCCCTGAGGTTGACCCG,"Exon (Taf4-201/Taf4, exon 15 of 15)",2,179912152,179976646,64495,2,Taf4-201,63118,Taf4-201;Taf4-204,Taf4;Taf4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,228980,ENSMUSG00000039117,conserved gene and region,2,179913485,179913596,112,*,112,10,0.598214286,0.998217469,0.089285714,0.000000188,CpGisland,TRUE,U10,Tr-S
5238,cg17596602,0.00000769,0.00000212,3.623867608,0.000339068,gain,ns,-0.00000352,0.0000036,-0.977526877,0.329070591,neg,ns,0.000433979,0.001056141,0.410910042,0.681422392,pos,ns,0.166583599,0.0000224,0.0000363,0.616206795,0.53821025,pos,ns,0.070312695,Atxn7l1,Atxn7l1_fiveUTR,12,33147760,33147809,33147760,33147761,50,-,CGTGTCTCTCGGCTGCTGCTGCCGAAGGAACAGGGAAAAAGCAACAAGAA,Promoter (<=1kb),12,33147774,33326133,178360,1,Atxn7l1-206,0,Atxn7l1-201;Atxn7l1-203;Atxn7l1-212;Atxn7l1-206;Atxn7l1-204;Atxn7l1-208,Atxn7l1;Atxn7l1;Atxn7l1;Atxn7l1;Atxn7l1;Atxn7l1,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,24,380753,ENSMUSG00000020564,conserved gene but different region,12,33147399,33147783,385,*,385,47,0.711688312,0.979166667,0.122077922,1.93E-40,CpGisland,TRUE,U2,Pr-W
12799,cg09913224,0.0000272,0.00000739,3.678806427,0.000276202,gain,ns,-0.0000123,0.0000126,-0.977410717,0.329127979,neg,ns,-0.005186375,0.003678476,-1.409925159,0.159564275,neg,ns,0.797064337,0.000118976,0.000126502,0.940502949,0.347691911,pos,ns,0.708021298,Tmem33,Tmem33_Intergenic_upstream,5,67213388,67213437,67213436,67213437,50,-,TGGCTTCATCAATCATTTGGACCAGTTCACATCTCCTTCATGGTGTTCCG,Distal Intergenic,5,67260565,67291461,30897,1,Tmem33-201,-47177,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,22,22,67878,ENSMUSG00000037720,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
15991,cg12082993,-0.0000134,0.0000173,-0.775899084,0.438400103,loss,ns,-0.0000287,0.0000293,-0.977267972,0.329198511,neg,ns,0.00215608,0.008592847,0.250915718,0.802045501,pos,ns,0.095800993,-0.000309718,0.000295507,-1.048087875,0.295414569,neg,ns,0.268612366,Gm12416,Gm12416_Promoter,4,84103004,84103053,84103052,84103053,50,+,CTCAGATTTAAGTACTTAAAATAAACAGATATAAAGTAACAGATGTCCCG,Promoter (1-2kb),4,84104895,84105902,1008,1,Gm12416-201,-1842,Gm12416-201,Gm12416,-1842,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,11,668010,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4978,cg26679061,0.0000184,0.00000234,7.855013755,6.61E-14,gain,yes,-0.00000389,0.00000398,-0.977204622,0.329229816,neg,ns,0.003400044,0.001164882,2.918788724,0.00377114,pos,ns,2.423527326,-0.000039,0.0000401,-0.97417192,0.330730721,neg,ns,0.036618961,Prdm12,Prdm12_Intron,2,31641111,31641160,31641159,31641160,50,-,CTACAGCATTCTTCCAGGGCTAATGAATTTAGAATTAGCAATTTCTTTCG,"Intron (Prdm12-201/Prdm12, intron 1 of 4)",2,31640037,31655795,15759,1,Prdm12-201,1074,Prdm12-201,Prdm12,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,10,381359,ENSMUSG00000079466,conserved gene and region,2,31641159,31641262,104,*,104,12,0.586538462,1.386666667,0.115384615,3.14E-10,CpGisland,TRUE,U13,Hc-P
181,cg08573313,-0.00000354,0.00000179,-1.974213222,0.049244919,loss,ns,-0.00000298,0.00000305,-0.977030876,0.329315684,neg,ns,-0.000770585,0.00089249,-0.863410692,0.388579213,neg,ns,0.410520436,0.0000612,0.0000307,1.994578677,0.046964253,pos,ns,0.065351124,Casd1,Casd1_fiveUTR,6,4601141,4601190,4601141,4601142,50,-,CGCGCACTGTTGTCATGGAGGAACCAAGATGGCGGCTCTGGCCTACAACC,Promoter (<=1kb),6,4601146,4608748,7603,1,Casd1-203,0,Casd1-201;Casd1-204;Casd1-203;Casd1-202,Casd1;Casd1;Casd1;Casd1,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,6,213819,ENSMUSG00000015189,conserved gene and region,6,4600919,4601684,766,*,766,100,0.791122715,0.834786399,0.130548303,8.09E-89,CpGisland,TRUE,U1,Pr-A
13504,cg24749793,-0.0000307,0.00000549,-5.594805845,4.86E-08,loss,yes,0.00000911,0.00000933,0.976847384,0.329406385,pos,ns,0.003859616,0.002733553,1.411941146,0.158970273,pos,ns,0.798684079,-0.000239891,0.000094,-2.551852315,0.011194802,neg,ns,0.894836675,Gm18918,Gm18918_Intron,16,70986188,70986237,70986188,70986189,50,-,CGGCCTCTTGAAGAAAATTGGCTTTTGCAAAATAGTAAGTTTTAAAATAG,"Intron (Gm29823-201/Gm29823-201, intron 4 of 7)",16,71210854,71211801,948,1,Gm18918-201,-224666,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,2,100417953,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U14,Hc-H
27159,cg04447890,0.00000507,0.00000179,2.829347519,0.004968462,gain,ns,-0.00000297,0.00000304,-0.976783921,0.329437758,neg,ns,-0.000406808,0.000891831,-0.456149159,0.648602116,neg,ns,0.188021639,0.0000358,0.0000307,1.166927438,0.244136526,pos,ns,0.125796113,Wls,Wls_fiveUTR,3,159839935,159839984,159839935,159839936,50,+,CGCAAAAATGGCTGGGGCAATTATAGAAAACATGAGCACCAAGAAGCTGT,Promoter (<=1kb),3,159839672,159936023,96352,1,Wls-201,263,Wls-201;Wls-205;Wls-207;Wls-204;Wls-206;Wls-202,Wls;Wls;Wls;Wls;Wls;Wls,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,3,68151,ENSMUSG00000028173,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18388,cg17417015,-0.0000128,0.00000657,-1.945499065,0.052618634,loss,ns,-0.0000109,0.0000112,-0.976768126,0.329445567,neg,ns,-0.002945189,0.003271103,-0.900365726,0.368624557,neg,ns,0.433415736,-0.0000967,0.000112493,-0.859762483,0.390584366,neg,ns,0.774447787,Pde8b,Pde8b_Exon,13,95085156,95085205,95085204,95085205,50,-,GAACAGTTTGCTCTCACCCTCCTTGGCCAATCACTGGGGTGATCTTCACG,"Exon (Pde8b-207/Pde8b, exon 9 of 22)",13,95024454,95250336,225883,2,Pde8b-210,165131,Pde8b-210;Pde8b-208;Pde8b-207;Pde8b-201;Pde8b-202;Pde8b-214;Pde8b-204;Pde8b-206;Pde8b-209,Pde8b;Pde8b;Pde8b;Pde8b;Pde8b;Pde8b;Pde8b;Pde8b;Pde8b,0;0;0;0;0;0;0;0;137861,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,218461,ENSMUSG00000021684,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14664,cg21259064,-0.00000107,0.0000013,-0.829020563,0.407730632,loss,ns,-0.00000215,0.0000022,-0.976719892,0.329469414,neg,ns,0.000671174,0.000645355,1.040007808,0.299146723,pos,ns,0.52411575,0.00000188,0.0000222,0.08483974,0.932443563,pos,ns,0.970408756,Pias2,Pias2_threeUTR,18,77144986,77145035,77144986,77144987,50,-,CGTGCTATTTAAAACAGGGTTCTCATGTATCAGCCATCTTCTGTAAGGGT,3' UTR,18,77065208,77153800,88593,1,Pias2-202,79778,Pias2-202;Pias2-204;Pias2-201;Pias2-203,Pias2;Pias2;Pias2;Pias2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,3,17344,ENSMUSG00000025423,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16084,cg20358314,0.00000861,0.00000508,1.69598561,0.090892548,gain,ns,0.00000842,0.00000862,0.976716266,0.329471207,pos,ns,0.001495152,0.002526435,0.591803094,0.554413786,pos,ns,0.256165979,0.00000168,0.0000869,0.019307133,0.984608515,pos,ns,0.91383568,Acaca,Acaca_Intron,11,84367435,84367484,84367435,84367436,50,+,CGAGTGACTTCAGATTTTAATTTAGTGGAAGCGTTAAAGAAAGCAGATGA,"Intron (Acaca-202/Acaca, intron 47 of 55)",11,84173122,84401651,228530,1,Acaca-202,194313,Acaca-202;Acaca-201,Acaca;Acaca,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,28,28,107476,ENSMUSG00000020532,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27938,cg06413694,-0.00000299,0.000002,-1.495420806,0.135821939,loss,ns,0.00000332,0.00000339,0.976617605,0.329519988,pos,ns,0.001747546,0.000994489,1.757229743,0.079865766,pos,ns,1.09763934,-0.0000904,0.0000342,-2.643157438,0.008631115,neg,ns,0.952104324,Rps6kc1,Rps6kc1_Intron,1,190713897,190713946,190713945,190713946,50,+,TAGCTCCCTAATTAACTGTCTCAAATATATAATTACATTGCATCTTTACG,"Intron (Rps6kc1-204/Rps6kc1, intron 11 of 12)",1,190700202,190911747,211546,2,Rps6kc1-204,197801,Rps6kc1-204,Rps6kc1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,29,320119,ENSMUSG00000089872,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10987,cg14826942,0.000000968,0.000000401,2.415672938,0.01628415,gain,ns,0.000000665,0.000000681,0.97643852,0.329608546,pos,ns,-0.000230816,0.000199456,-1.157229144,0.248069649,neg,ns,0.605426369,0.00000673,0.00000686,0.981574624,0.327074883,pos,ns,0.991548748,Macroh2a1,Macroh2a1_Exon,13,56088286,56088335,56088286,56088287,50,-,CGGGTGAACGACAGCATCACTGTCGATCGAGGCAATGTCAGCCTGTACAA,"Exon (Macroh2a1-202/Macroh2a1, exon 6 of 9)",13,56073619,56135631,62013,2,Macroh2a1-201,47296,Macroh2a1-201;Macroh2a1-202;Macroh2a1-203;Macroh2a1-206,Macroh2a1;Macroh2a1;Macroh2a1;Macroh2a1,0;0;-3765;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,9,26914,ENSMUSG00000015937,mapped to different genes,13,56088141,56088314,174,*,174,13,0.58045977,0.887058824,0.074712644,1.25E-08,CpGisland,TRUE,U10,Tr-S
3587,cg09521419,-0.0000291,0.00000791,-3.681590791,0.000273329,loss,ns,0.0000131,0.0000134,0.976423037,0.329616203,pos,ns,-0.003218702,0.003934701,-0.818029602,0.413968602,neg,ns,0.383032597,0.0000563,0.000135314,0.415958488,0.677728186,pos,ns,0.865756483,Gm12067,Gm12067_Intron,11,24618950,24618999,24618950,24618951,50,-,CGTTTGTGTGTCATTAGACCTTATAAATTGATTTATATGTTTCAACTCCA,"Intron (Gm12068-201/Gm12068-201, intron 2 of 3)",11,24552438,24553962,1525,2,Gm12067-201,-65037,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,58,100417843,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11314,cg17765149,0.000125607,0.0000174,7.206422388,4.40E-12,gain,yes,0.0000289,0.0000296,0.976370742,0.329642066,pos,ns,0.010722479,0.008675021,1.236017711,0.217387719,pos,ns,0.662764994,-0.000128838,0.000298333,-0.431860297,0.666143164,neg,ns,0.574174779,Foxa1,Foxa1_Intergenic_downstream,12,57535284,57535333,57535332,57535333,50,-,CTCTGGGGGAGCCTTTCCCCTGATCGCTGCTTTTGAAGTGAAGGGGCCCG,Distal Intergenic,12,57540628,57546121,5494,2,Foxa1-201,10837,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,7,15375,ENSMUSG00000035451,conserved gene and region,12,57535308,57535490,183,*,183,14,0.628415301,0.779671333,0.076502732,2.14E-09,CpGisland,TRUE,U13,Hc-P
3141,cg18138089,-0.00000215,0.00000114,-1.883021879,0.060633547,loss,ns,0.00000189,0.00000194,0.976208786,0.329722172,pos,ns,0.000677247,0.000567517,1.193349918,0.233644835,pos,ns,0.631443816,-0.0000387,0.0000195,-1.983471317,0.048196809,neg,ns,0.962219818,Abi1,Abi1_Exon,2,22971180,22971229,22971228,22971229,50,-,TGAGTTCTTGATGTATTCTTATTTGTTGTCAAAATACCAATCTCTCTTCG,"Exon (Abi1-206/Abi1, exon 3 of 10)",2,22940073,23040195,100123,2,Abi1-206,68966,Abi1-206;Abi1-209;Abi1-211;Abi1-205;Abi1-212;Abi1-202;Abi1-208;Abi1-204;Abi1-201;Abi1-203;Abi1-215,Abi1;Abi1;Abi1;Abi1;Abi1;Abi1;Abi1;Abi1;Abi1;Abi1;Abi1,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,11308,ENSMUSG00000058835,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22713,cg22300912,-0.0000342,0.00000381,-8.981811671,2.65E-17,loss,yes,-0.00000631,0.00000647,-0.97592992,0.329860133,neg,ns,-0.002727234,0.001894381,-1.439644198,0.150977118,neg,ns,0.82108887,-0.00000707,0.0000651,-0.108506643,0.913664009,neg,ns,0.92238174,Caskin2,Caskin2_Exon,11,115802353,115802402,115802353,115802354,50,+,CGCTGCTCACCAGCTGCTTGTGGTACTGTGGCAGCCCCAGTGCACACAGC,"Exon (Caskin2-201/Caskin2, exon 17 of 20)",11,115799183,115813630,14448,2,Caskin2-201,11228,Caskin2-201;Caskin2-202;Caskin2-203;Caskin2-204;Tmem94-201;Tmem94-202;Tmem94-208,Caskin2;Caskin2;Caskin2;Caskin2;Tmem94;Tmem94;Tmem94,0;-1472;5700;11237;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,140721,ENSMUSG00000034471,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8605,cg16455027,-0.00000439,0.00000402,-1.093088356,0.275203703,loss,ns,-0.00000666,0.00000683,-0.975903525,0.329873194,neg,ns,-0.002968922,0.001999587,-1.484767619,0.138621507,neg,ns,0.858169384,0.0000429,0.0000688,0.624482846,0.532769856,pos,ns,0.933563068,Gm12161,Gm12161_Intergenic_upstream,11,45438435,45438484,45438435,45438436,50,-,CGTTGAGGACAAAACAATGTAGCTTAATAGATGACAAATAGAAATTAGTT,Distal Intergenic,11,45280594,45280954,361,2,Gm12161-201,-157530,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,10,382510,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16865,cg00072466,-0.000000972,0.0000014,-0.696047031,0.486920887,loss,ns,-0.00000232,0.00000237,-0.975899531,0.32987517,neg,ns,0.001175517,0.000695164,1.690991314,0.091843528,pos,ns,1.036951444,-0.00000822,0.0000239,-0.343842104,0.731198134,neg,ns,0.96481459,Ythdc1,Ythdc1_threeUTR,5,86828207,86828256,86828207,86828208,50,-,CGGTAAAGAAGAAAGAGAAAATCCTCAAATCAAGCTGCATGGACTAGTTT,3' UTR,5,86804221,86836654,32434,1,Ythdc1-202,23986,Ythdc1-202;Ythdc1-203;Ythdc1-208;Ythdc1-201;Ythdc1-207;Ythdc1-206;Ythdc1-205;Ythdc1-204,Ythdc1;Ythdc1;Ythdc1;Ythdc1;Ythdc1;Ythdc1;Ythdc1;Ythdc1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,12,17,231386,ENSMUSG00000035851,conserved gene but different region,5,86828042,86828208,167,*,167,10,0.479041916,1.076724694,0.05988024,0.00000716,CpGisland,TRUE,U10,Tr-S
9634,cg13732394,0.0000527,0.00000399,13.20997935,6.54E-32,gain,yes,-0.00000661,0.00000677,-0.975861308,0.329894083,neg,ns,0.006150312,0.001984827,3.098663899,0.002122086,pos,ns,2.673237005,-0.0000575,0.0000683,-0.842736169,0.400025742,neg,ns,0.120789692,Dbx1,Dbx1_Intron,7,49635350,49635399,49635350,49635351,50,+,CGCCGGGAAGGGAACCGCCTCAAATTGGGACCATGACAATTCCTGCTAAT,"Intron (Dbx1-201/Dbx1, intron 2 of 3)",7,49631499,49636849,5351,2,Dbx1-201,1450,Dbx1-201,Dbx1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,18,13172,ENSMUSG00000030507,conserved gene and region,7,49635183,49635366,184,*,184,15,0.64673913,0.844553244,0.081521739,1.96E-10,CpGisland,TRUE,U13,Hc-P
3244,cg00704341,-0.000000267,0.00000775,-0.034473603,0.972521678,loss,ns,-0.0000128,0.0000132,-0.975786672,0.329931016,neg,ns,-0.005758935,0.003856012,-1.493495115,0.13632472,neg,ns,0.865425386,-0.0000416,0.000132608,-0.313946172,0.753773079,neg,ns,0.786294456,Gm11888,Gm11888_Intron,4,23341391,23341440,23341391,23341392,50,-,CGTACTCAGGCGCAATAAACAGCTAAATGAGGCGCACAGCAATTTCACTT,"Intron (Gm11884-201/Gm11884-201, intron 1 of 4)",4,23484820,23486020,1201,1,Gm11888-201,-143429,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,14,625462,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22301,cg05261703,-0.00000628,0.00000302,-2.080195508,0.038328762,loss,ns,-0.00000501,0.00000513,-0.975522712,0.330061656,neg,ns,-0.000298613,0.001503248,-0.19864549,0.84267028,neg,ns,0.074342323,-0.000108283,0.0000517,-2.094587193,0.03701923,neg,ns,0.927950015,Setd5,Setd5_Exon,6,113110042,113110091,113110090,113110091,50,+,CCATTCTTATACATTGTGACTTTCTTGAAATGTTTATATGCAGCATGACG,"Exon (Setd5-212/Setd5, exon 4 of 18)",6,113077365,113153435,76071,1,Setd5-201,32677,Setd5-209;Setd5-201;Setd5-206;Setd5-205;Setd5-203;Setd5-212;Setd5-202;Setd5-204;Setd5-210;Setd5-214;Setd5-207,Setd5;Setd5;Setd5;Setd5;Setd5;Setd5;Setd5;Setd5;Setd5;Setd5;Setd5,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,19,72895,ENSMUSG00000034269,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20719,cg10429476,0.000000635,0.00000123,0.513935626,0.607663135,gain,ns,-0.00000205,0.0000021,-0.975263567,0.330189946,neg,ns,-0.001265954,0.000614626,-2.059715527,0.040260375,neg,ns,1.395122181,0.000026,0.0000211,1.231000383,0.219255855,pos,ns,0.961352707,Itgb3,Itgb3_Exon,11,104633427,104633476,104633427,104633428,50,+,CGGCAGGTGGAGGATTACCCTGTGGACATCTACTACTTGATGGACCTGTC,"Exon (Itgb3-201/Itgb3, exon 4 of 15)",11,104608000,104670476,62477,1,Itgb3-201,25427,Itgb3-201;Itgb3-202,Itgb3;Itgb3,0;-3913,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,16416,ENSMUSG00000020689,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25646,cg26160460,0.0000165,0.00000604,2.73551074,0.006587113,gain,ns,0.00001,0.0000103,0.975228559,0.330207279,pos,ns,0.003862258,0.003005173,1.285202981,0.199680716,pos,ns,0.699663874,0.0000927,0.000103348,0.897361759,0.370222284,pos,ns,0.842298565,Ptprc,Ptprc_Exon,1,137966469,137966518,137966517,137966518,50,+,ACATTCAACGCTGTCGGTGAGTTTGGAATTAAAATCAAAACCATCGACCG,"Exon (Mir181a-1-201/Mir181a-1-201, exon 1 of 1)",1,138112030,138115474,3445,2,Ptprc-211,148956,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,19264,ENSMUSG00000026395,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25116,cg26376591,-0.000109182,0.00000948,-11.51789526,8.60E-26,loss,yes,-0.0000157,0.0000161,-0.975119836,0.330261114,neg,ns,0.017502881,0.004717968,3.709834741,0.000245727,pos,ns,3.609547738,-0.00093217,0.000162251,-5.745252459,2.19E-08,neg,yes,0.701776305,Ahdc1,Ahdc1_Intron,4,133014520,133014569,133014520,133014521,50,+,CGTTACTTTTGAAATAATATAGAGAGAAACAAATGTGATGTGTTTAAGTT,"Intron (Ahdc1-210/Ahdc1, intron 2 of 3)",4,133011260,133060820,49561,1,Ahdc1-210,3260,Ahdc1-210;Ahdc1-203;Ahdc1-204;Ahdc1-205;Ahdc1-207;Ahdc1-211;Ahdc1-209;Ahdc1-206;Ahdc1-201,Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,35,49,230793,ENSMUSG00000037692,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2514,cg19719713,-0.00000928,0.00000784,-1.184600572,0.237082812,loss,ns,0.000013,0.0000133,0.975029704,0.330305747,pos,ns,0.002192846,0.003900365,0.562215689,0.574375365,pos,ns,0.240804195,-0.00021831,0.000134133,-1.627559173,0.104634303,neg,ns,0.614840006,Pkhd1,Pkhd1_Intron,1,20135245,20135294,20135245,20135246,50,-,CGGACACAATAAATCTGCGCCATATGTGACCATTTCCTGTGTCAGTTCCT,"Intron (Pkhd1-201/Pkhd1, intron 60 of 66)",1,20057779,20618064,560286,2,Pkhd1-201,482770,Pkhd1-201,Pkhd1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,25,241035,ENSMUSG00000043760,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6172,cg23354284,-0.00000621,0.00000395,-1.569858999,0.117468023,loss,ns,-0.00000655,0.00000672,-0.974863289,0.330388167,neg,ns,-0.004423008,0.001968405,-2.247000678,0.025343283,neg,ns,1.596137125,0.0000406,0.0000677,0.599417865,0.549332094,pos,ns,0.923597122,Gm9211,Gm9211_Intergenic_upstream,7,36207987,36208036,36208035,36208036,50,-,ATTAGCAGCGAACCATACTGCAGAGGATTAGCGAGAGCTGGCACAGCTCG,Distal Intergenic,7,36234292,36235266,975,1,Gm9211-201,-26305,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,15,668507,NA,mapped to different genes,7,36207995,36208105,111,*,111,9,0.666666667,0.749437359,0.081081081,0.00000221,CpGisland,TRUE,U15,NS
16250,cg25235409,-0.0000018,0.00000494,-0.364722006,0.715567608,loss,ns,-0.00000818,0.00000839,-0.974849375,0.330395059,neg,ns,-0.00224683,0.002458807,-0.913788746,0.361538018,neg,ns,0.441846027,0.000125853,0.0000846,1.488361636,0.137672079,pos,ns,0.892796385,Bnc2,Bnc2_Intron,4,84669262,84669311,84669310,84669311,50,-,TGCTGGGATGTAACCGAGAAATCTAATAACTGTGACAGTGGGGCCTTTCG,"Intron (Bnc2-201/Bnc2, intron 1 of 7)",4,84275095,84675034,399940,2,Bnc2-201,5723,Bnc2-201;Bnc2-202;Bnc2-214;Bnc2-215;Bnc2-206;Bnc2-211;Bnc2-217;Bnc2-207;Bnc2-203;Bnc2-209;Bnc2-204;Bnc2-210,Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,91,242509,ENSMUSG00000028487,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22987,cg19584522,-0.000019,0.0000316,-0.600155289,0.548841205,loss,ns,0.0000524,0.0000538,0.974814949,0.330412111,pos,ns,-0.001229138,0.015747844,-0.078051208,0.937837674,neg,ns,0.027872325,-0.0000594,0.000541567,-0.109613335,0.912786957,neg,ns,0.443555275,Gm47912,Gm47912_Intron,13,116575685,116575734,116575733,116575734,50,-,GCCCCTACCACAGCATACTAATTTGCTAGATCAAGTCTGTCAGAATATCG,"Intron (Gm47914-201/Gm47914-201, intron 1 of 1)",13,116361198,116361694,497,2,Gm47912-201,-214040,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,8,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26372,cg05092810,0.00000171,0.00000237,0.722803821,0.470345374,gain,ns,0.00000392,0.00000402,0.974744236,0.330447138,pos,ns,0.00293192,0.001178837,2.487129901,0.013403541,pos,ns,1.872780453,-0.0000725,0.0000405,-1.788673979,0.07464368,neg,ns,0.046665245,Nkx2-2,Nkx2-2_Exon,2,147184010,147184059,147184058,147184059,50,-,CTGGGCCTGGACCAGGGGGTGTGCTGTCGGGTACTGGGGGGTGCTGGCCG,"Exon (Nkx2-2-201/Nkx2-2, exon 2 of 2)",2,147177546,147186101,8556,2,Nkx2-2-203,2042,Nkx2-2-203;Nkx2-2-201;Nkx2-2-202;Nkx2-2-204,Nkx2-2;Nkx2-2;Nkx2-2;Nkx2-2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,15,30,18088,ENSMUSG00000027434,conserved gene and region,2,147184037,147184754,718,*,718,60,0.674094708,0.742310675,0.08356546,8.11E-41,CpGisland,TRUE,U3,Pr-B
8170,cg06092926,-0.00000303,0.00000222,-1.363040433,0.173858972,loss,ns,0.00000368,0.00000377,0.974713205,0.33046251,pos,ns,0.001098527,0.001105793,0.993429072,0.321275682,pos,ns,0.493122146,-0.00000666,0.000038,-0.175188587,0.861045821,neg,ns,0.961178461,Pax2,Pax2_Intron,19,44817487,44817536,44817487,44817488,50,-,CGAATTACTCTGGTGATAAATCAGGGGGCAGCTTCACCCCCAGTAGAAGG,"Intron (Pax2-203/Pax2, intron 6 of 9)",19,44756045,44837851,81807,1,Pax2-203,61442,Pax2-203;Pax2-201;Pax2-202,Pax2;Pax2;Pax2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,35,166,18504,ENSMUSG00000004231,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2241,cg06267904,-0.0000268,0.00000862,-3.114220217,0.002016559,loss,ns,-0.0000143,0.0000146,-0.974652313,0.330492675,neg,ns,-0.007345617,0.00428954,-1.712448489,0.08781402,neg,ns,1.05643614,0.0000662,0.000147517,0.448888924,0.653825417,pos,ns,0.872096171,Gm12024,Gm12024_Intergenic_upstream,11,18747838,18747887,18747886,18747887,50,+,AGTTTTATCCATCTTGACACTGAAACAGGTTTAGGCAGTGAGTTGACACG,Distal Intergenic,11,18577227,18578479,1253,2,Gm12024-201,-169359,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,12,100417654,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6739,cg19004110,-0.0000118,0.00000826,-1.43163084,0.153256911,loss,ns,-0.0000137,0.000014,-0.974220051,0.330706866,neg,ns,-0.014479302,0.004109485,-3.52338615,0.000490203,neg,ns,3.309624375,0.000138822,0.000141325,0.982291258,0.326722377,pos,ns,0.640461328,Sgcz,Sgcz_Exon,8,38252165,38252214,38252213,38252214,50,-,AATATCCACCCAAAGCCACAATCACCTTCTGATCTGAGGAGCAGGTGACG,"Exon (Mir383-201/Mir383-201, exon 1 of 1)",8,37522298,38661508,1139211,2,Sgcz-202,409294,Sgcz-202;Sgcz-201,Sgcz;Sgcz,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,244431,ENSMUSG00000039539,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14839,cg23918841,-0.000000475,0.000000944,-0.502949478,0.615356928,loss,ns,0.00000156,0.0000016,0.974101197,0.330765775,pos,ns,0.001012749,0.000469731,2.156019199,0.031851248,pos,ns,1.496873553,-0.0000383,0.0000162,-2.370551336,0.01837305,neg,ns,0.972244826,Epsti1,Epsti1_Intron,14,77943305,77943354,77943305,77943306,50,-,CGCATTAATCTGCCCGTGCAAGCTGGCTGAAAATACACAAGCAGATTGCA,"Intron (Epsti1-201/Epsti1, intron 6 of 11)",14,77904239,78002657,98419,1,Epsti1-201,39066,Epsti1-201;Epsti1-202;Epsti1-203,Epsti1;Epsti1;Epsti1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,108670,ENSMUSG00000022014,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18979,cg06843382,-0.0000039,0.00000378,-1.03214671,0.302807954,loss,ns,-0.00000625,0.00000642,-0.974070454,0.330781014,neg,ns,0.00000142,0.001879638,0.000754495,0.999398486,pos,ns,0.000261313,-0.0000967,0.0000646,-1.495632454,0.135766767,neg,ns,0.924399858,Dach1,Dach1_Intron,14,98104547,98104596,98104595,98104596,50,+,ATTGTGTCAGGTTGATTTATTGAGTGAGCTTCACTTCACCGAATGTTCCG,"Intron (Dach1-201/Dach1, intron 1 of 10)",14,97786853,98169543,382691,2,Dach1-201,64947,Dach1-201;Dach1-202;Dach1-203,Dach1;Dach1;Dach1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,76,13134,ENSMUSG00000055639,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18617,cg09144092,0.000120115,0.0000159,7.576457865,4.13E-13,gain,yes,-0.0000262,0.0000269,-0.973615461,0.331006599,neg,ns,0.022696763,0.007890524,2.876458171,0.004300447,pos,ns,2.366486393,-0.000573866,0.000271354,-2.114820413,0.035243027,neg,ns,0.408601097,Hoxb3,Hoxb3_Intron,11,96328465,96328514,96328465,96328466,50,+,CGTCTTATATGTCCATGTAAATTTATTGTTTGTTATTAATGTTATTGTCG,"Intron (Hoxb3-202/Hoxb3, intron 1 of 3)",11,96323326,96347930,24605,1,Hoxb3-202,5139,Hoxb3-202;Hoxb3-203,Hoxb3;Hoxb3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,19,15410,ENSMUSG00000048763,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
19232,cg09665160,0.00000136,0.00000328,0.41447181,0.678815261,gain,ns,-0.00000542,0.00000556,-0.973580821,0.331023778,neg,ns,0.000389677,0.001630057,0.239057505,0.811218958,pos,ns,0.090861908,-0.0000786,0.0000561,-1.402277202,0.161833057,neg,ns,0.947598385,Msl1,Msl1_Exon,11,98804846,98804895,98804894,98804895,50,-,GTTGAAAGTTTGATGATTACCCCCTTCTTGCCTGTTGTAGCATTTGGACG,"Exon (Msl1-201/Msl1, exon 8 of 9)",11,98795516,98807859,12344,1,Msl1-201,9330,Casc3-201;Casc3-204;Msl1-201;Msl1-203;Msl1-204;Msl1-202;Msl1-205;Msl1-206,Casc3;Casc3;Msl1;Msl1;Msl1;Msl1;Msl1;Msl1,-10;-4913;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,13,74026,ENSMUSG00000052915,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17683,cg14523578,0.0000299,0.00000653,4.578106249,0.0000068,gain,ns,0.0000108,0.0000111,0.973577392,0.331025478,pos,ns,-0.001431058,0.003251982,-0.440057012,0.660202469,neg,ns,0.180322856,0.000362279,0.000111835,3.239396268,0.001327851,pos,ns,0.077312646,Elavl2,Elavl2_fiveUTR,4,91376262,91376311,91376310,91376311,50,-,GTTTTTTCAAAAAGACGATGTCTTTCTCCTTGTTGCTTTTTAGTAGGTCG,Promoter (<=1kb),4,91258666,91376307,117642,2,Elavl2-215,0,Elavl2-204;Elavl2-201;Elavl2-207;Elavl2-208;Elavl2-202;Elavl2-209;Elavl2-203;Elavl2-205;Elavl2-215;Elavl2-212;Elavl2-214;Elavl2-211,Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,8,31,15569,ENSMUSG00000008489,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
25504,cg10390530,0.00000611,0.00000469,1.303415409,0.193400163,gain,ns,-0.00000776,0.00000797,-0.973576405,0.331025968,neg,ns,-0.005563518,0.002334273,-2.383405065,0.017755219,neg,ns,1.750673972,0.000143249,0.0000803,1.784471061,0.075325017,pos,ns,0.900602797,Mgmt,Mgmt_Intron,7,137006014,137006063,137006014,137006015,50,-,CGTCTACGGTGGGATAATAATGGCAGCAATTTAAAGTGATATTAAATGAG,"Intron (Mgmt-201/Mgmt, intron 2 of 4)",7,136894614,137130266,235653,1,Mgmt-201,111400,Mgmt-201,Mgmt,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,16,17314,ENSMUSG00000054612,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15585,cg02261365,-0.00000419,0.00000578,-0.725427758,0.468736905,loss,ns,-0.00000956,0.00000982,-0.973565036,0.331031606,neg,ns,-0.004997766,0.00287761,-1.736776815,0.083419923,neg,ns,1.078730214,0.000173133,0.000099,1.749512225,0.081192053,pos,ns,0.098085588,Cetn3,Cetn3_Intergenic_downstream,13,81944313,81944362,81944313,81944314,50,-,CGCTGGACCTCATCTGCTTAAAAAGATGCACGGATATAGTCATCACAGTT,Distal Intergenic,13,81791977,81793668,1692,1,Cetn3-204,152385,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,9,12626,ENSMUSG00000021537,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24665,cg20711724,0.000101449,0.0000156,6.491910337,3.36E-10,gain,yes,-0.0000258,0.0000265,-0.973443635,0.331091816,neg,ns,-0.009262743,0.007777685,-1.190938364,0.234588869,neg,ns,0.629692599,0.000534929,0.000267474,1.999930444,0.046379958,pos,ns,0.320165066,Shmt2,Shmt2_Promoter,10,127524985,127525034,127524985,127524986,50,-,CGTCTGCAAACTCAGCGCCCACGAAATTAGGAAGGAAAAGGAAGATCGAT,Promoter (2-3kb),10,127517139,127522444,5306,2,Shmt2-201,-2590,Nxph4-201;Shmt2-206;Shmt2-201;Shmt2-204;Shmt2-205;Shmt2-202,Nxph4;Shmt2;Shmt2;Shmt2;Shmt2;Shmt2,0;0;0;-2583;-2584;-2621,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,1,108037,ENSMUSG00000025403,conserved gene and region,10,127524888,127525140,253,*,253,16,0.608695652,0.786783285,0.063241107,1.95E-09,CpGisland,TRUE,U13,Hc-P
19044,cg23597056,0.0000817,0.0000125,6.525611373,2.76E-10,gain,yes,-0.0000207,0.0000213,-0.973433744,0.331096722,neg,ns,0.001233624,0.00623392,0.19788893,0.843261665,pos,ns,0.074037642,-0.000296393,0.000214384,-1.38253348,0.167803125,neg,ns,0.725894793,Cdk12,Cdk12_Intergenic_downstream,11,98283850,98283899,98283898,98283899,50,+,ATGAACATTGCGGTAATAACCATCTCATTTACATACTGCATTCTACTGCG,Distal Intergenic,11,98263502,98268011,4510,1,Cdk12-204,20348,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,25,69131,ENSMUSG00000003119,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26940,cg23405493,-0.00000196,0.000003,-0.651478686,0.515220193,loss,ns,0.00000497,0.0000051,0.973401502,0.331112714,pos,ns,0.003839488,0.00149541,2.567514599,0.010711732,pos,ns,1.970140282,-0.000101528,0.0000514,-1.97421869,0.049244295,neg,ns,0.937450054,Itch,Itch_Exon,2,155212362,155212411,155212362,155212363,50,-,CGAGGTGTTGAAGAACAGACACAAGCTTTCTTTGAAGGCTTTAATGAAAT,"Exon (Itch-201/Itch, exon 21 of 25)",2,155133509,155226855,93347,1,Itch-201,78853,Itch-201;Itch-202;Itch-203,Itch;Itch;Itch,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,16396,ENSMUSG00000027598,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10066,cg14899396,0.000097,0.0000158,6.13428168,2.61E-09,gain,yes,-0.0000261,0.0000269,-0.973248668,0.331188527,neg,ns,0.02937687,0.007869349,3.73307478,0.000225008,pos,ns,3.64780293,-0.00055864,0.000270626,-2.064248028,0.03982588,neg,ns,0.354962913,Dhx15,Dhx15_threeUTR,5,52150283,52150332,52150331,52150332,50,+,CAAGTTGTAACATTTCACAACTTCTAAAAGGAATGTCAACAATTACAACG,3' UTR,5,52150203,52190514,40312,2,Dhx15-201,40182,Dhx15-201;Dhx15-207;Dhx15-206;Dhx15-205,Dhx15;Dhx15;Dhx15;Dhx15,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,14,13204,ENSMUSG00000029169,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13629,cg21110231,0.0000487,0.0000128,3.814421522,0.000164733,gain,ns,0.0000211,0.0000217,0.973233911,0.331195848,pos,ns,0.004292894,0.006357377,0.675261796,0.500012803,pos,ns,0.301018875,0.0000127,0.00021863,0.058251462,0.95358586,pos,ns,0.419588477,Dlx1,Dlx1_Intergenic_downstream,2,71538230,71538279,71538230,71538231,50,-,CGCAAAAATTACAGTCCATATTAGGACATCTGAAATTGCGAAGAATTATA,Distal Intergenic,2,71530780,71532689,1910,1,Dlx1-206,7499,Dlx1-201;Dlx1-203,Dlx1;Dlx1,0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,36,13390,ENSMUSG00000041911,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
683,cg13488131,0.000034,0.0000116,2.932736514,0.003610221,gain,ns,-0.0000191,0.0000197,-0.973216829,0.331204322,neg,ns,0.01324995,0.005761989,2.299544344,0.022138431,pos,ns,1.65485316,-0.000579805,0.000198154,-2.926028915,0.003686808,neg,ns,0.60712419,Wdr70,Wdr70_Intron,15,7934227,7934276,7934275,7934276,50,-,GAAGTCCAGCTGCCTGAGATTCACTGGCAGCCGACCTTCAAAGAGAGCCG,"Intron (Wdr70-201/Wdr70, intron 10 of 17)",15,7873062,8099191,226130,2,Wdr70-201,164915,Wdr70-201,Wdr70,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,545085,ENSMUSG00000039828,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15976,cg20952375,-0.00000972,0.00000428,-2.269688588,0.023913031,loss,ns,-0.00000708,0.00000727,-0.973114548,0.331255066,neg,ns,0.004337829,0.002130586,2.035979229,0.042602316,pos,ns,1.370566795,-0.0000506,0.0000733,-0.69077851,0.490221645,neg,ns,0.927614004,Tshz1,Tshz1_Intron,18,84078895,84078944,84078895,84078896,50,-,CGTAGAAGATTGTTCTAGACCTGGCCTCTCAGGGAACATATATCCACCCT,"Intron (Tshz1-201/Tshz1, intron 1 of 1)",18,84011627,84086404,74778,2,Tshz1-201,7460,Tshz1-201;Tshz1-202;Tshz1-203;Tshz1-204,Tshz1;Tshz1;Tshz1;Tshz1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,18,110796,ENSMUSG00000046982,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14127,cg03392920,0.0000416,0.0000101,4.123361872,0.000048,gain,ns,0.0000167,0.0000171,0.973095535,0.3312645,pos,ns,0.009139818,0.005016584,1.821920666,0.069430509,pos,ns,1.158449652,-0.0000123,0.00017252,-0.071137731,0.94333401,neg,ns,0.182942426,Hoxd10,Hoxd10_Exon,2,74692368,74692417,74692368,74692369,50,+,CGTACCAGAGGCTGGTCCCTGAGTCTTGTCCCGTTGAGAACCCTGAGGTT,Promoter (<=1kb),2,74691924,74695105,3182,1,Hoxd10-201,444,Hoxd10-201,Hoxd10,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,21,24,15430,ENSMUSG00000050368,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
17084,cg05852264,0.0000226,0.00000387,5.856340163,1.21E-08,gain,yes,-0.00000639,0.00000657,-0.973057237,0.331283502,neg,ns,-0.003580506,0.001924637,-1.860354115,0.063782266,neg,ns,1.195300057,0.000157737,0.0000662,2.383161372,0.01776676,pos,ns,0.927112272,Msi2,Msi2_Exon,11,88348831,88348880,88348879,88348880,50,+,TTATGTAATTCCCCACTCCGGAGTCCTGGCTGGCAGGGCCGTAGAGATCG,"Exon (Msi2-203/Msi2, exon 12 of 14)",11,88339382,88718229,378848,2,Msi2-203,369349,Msi2-203;Msi2-201,Msi2;Msi2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,36,76626,ENSMUSG00000069769,conserved gene and region,11,88348768,88348968,201,*,201,21,0.696517413,0.87012987,0.104477612,9.68E-17,CpGisland,TRUE,U11,Tr-P
9035,cg24703182,-0.000012,0.00000397,-3.022519514,0.002715911,loss,ns,-0.00000656,0.00000675,-0.973030624,0.331296707,neg,ns,0.000962517,0.001976161,0.487063859,0.626557289,pos,ns,0.203039213,-0.0000371,0.000068,-0.545282627,0.585951253,neg,ns,0.91599164,Fam8a1,Fam8a1_Exon,13,46675549,46675598,46675597,46675598,50,+,GCTTCTTTTTTCCCTGCTTTCATCACACTGCTGTTTTTTCAGCATAATCG,"Exon (Fam8a1-201/Fam8a1, exon 5 of 5)",13,46669522,46678056,8535,1,Fam8a1-201,6027,Fam8a1-201;Fam8a1-202;Nup153-201,Fam8a1;Fam8a1;Nup153,0;4358;52342,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,97863,ENSMUSG00000069237,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12577,cg03673751,-0.0000315,0.00000687,-4.583775945,0.00000663,loss,ns,-0.0000114,0.0000117,-0.973010165,0.331306858,neg,ns,-0.001332262,0.003420827,-0.389456174,0.697206132,neg,ns,0.156638802,-0.000170945,0.000117642,-1.453095868,0.147208639,neg,ns,0.932126556,Tjp1,Tjp1_Exon,7,65322961,65323010,65323009,65323010,50,-,TTATTAGGGATGATGCCTCGTTCTACCTCCTTATGATTTTTACCAATTCG,"Exon (Tjp1-202/Tjp1, exon 13 of 28)",7,65296165,65371239,75075,2,Tjp1-202,48229,Tjp1-202;Tjp1-201;Tjp1-207,Tjp1;Tjp1;Tjp1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,13,21872,ENSMUSG00000030516,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5476,cg14491766,0.00000309,0.00000479,0.645564296,0.5190391,gain,ns,-0.00000791,0.00000813,-0.972869896,0.331376465,neg,ns,0.003779779,0.002383198,1.586011583,0.113756169,pos,ns,0.944025043,-0.000253768,0.000082,-3.096322998,0.002138399,neg,ns,0.882405453,Dnajc19,Dnajc19_threeUTR,3,34058072,34058121,34058072,34058073,50,-,CGACAGATTGGTATGGGTTTCAGACCTTCTTCCACCAGAGGGCCTGAAAA,3' UTR,3,34056020,34081312,25293,2,Dnajc19-201,23191,Dnajc19-201;Fxr1-201;Fxr1-202;Fxr1-207;Fxr1-206;Fxr1-204;Fxr1-208,Dnajc19;Fxr1;Fxr1;Fxr1;Fxr1;Fxr1;Fxr1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,8,67713,ENSMUSG00000027679,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2346,cg00437193,0.0000759,0.00000893,8.502394005,7.98E-16,gain,yes,-0.0000148,0.0000152,-0.972799949,0.331411178,neg,ns,0.007244241,0.004444002,1.630116506,0.104092474,pos,ns,0.982580668,-0.000173107,0.000152829,-1.132682792,0.258222792,neg,ns,0.069301686,Tfap2d,Tfap2d_Exon,1,19104372,19104421,19104372,19104373,50,-,CGACGGATCAAACAGCTACCGTTTGATGCAGCTTGGCTGTCTGGAGTCAG,"Exon (Tfap2d-201/Tfap2d, exon 2 of 8)",1,19103022,19166346,63325,1,Tfap2d-201,1350,Tfap2d-201;Tfap2d-202,Tfap2d;Tfap2d,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,23,226896,ENSMUSG00000042596,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
8713,cg03482211,-0.00000164,0.000000893,-1.838580347,0.066933427,loss,ns,0.00000148,0.00000152,0.972710023,0.331455811,pos,ns,-0.0000467,0.000444342,-0.105061004,0.916395347,neg,ns,0.037917125,-0.00000303,0.0000153,-0.198505426,0.842779758,neg,ns,0.974217384,Kcnn2,Kcnn2_Exon,18,45592093,45592142,45592141,45592142,50,-,TGTGCTATTCATCCCATACCTGGGAATTATACATTCACATGGACGGCCCG,"Exon (Kcnn2-205/Kcnn2, exon 6 of 11)",18,45269005,45685883,416879,1,Kcnn2-205,323088,Kcnn2-205;Kcnn2-201;Kcnn2-207;Kcnn2-206;Kcnn2-202;Kcnn2-208;Kcnn2-203;Kcnn2-209,Kcnn2;Kcnn2;Kcnn2;Kcnn2;Kcnn2;Kcnn2;Kcnn2;Kcnn2,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,8,140492,ENSMUSG00000054477,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4574,cg14525247,0.000149194,0.0000105,14.20168494,1.32E-35,gain,yes,-0.0000174,0.0000178,-0.972680826,0.331470303,neg,ns,0.00553827,0.005228632,1.059219734,0.290324329,pos,ns,0.537116568,0.00020758,0.000179812,1.154428941,0.249213509,pos,ns,0.686033117,Urm1,Urm1_Exon,2,29845633,29845682,29845633,29845634,50,-,CGGAGCTCAGCCACAGATGTCCAGCCACAATTCTCGGTTGGCCGCAGACT,"Exon (Mir219b-201/Mir219b-201, exon 1 of 1)",2,29841648,29844064,2417,1,Urm1-202,4034,Urm1-205;Urm1-206;Urm1-201;Urm1-204;Urm1-202,Urm1;Urm1;Urm1;Urm1;Urm1,25558;18291;18291;18272;3985,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,10,68205,ENSMUSG00000069020,mapped to different genes,2,29845571,29845950,380,*,380,29,0.62631579,0.7861882,0.07631579,6.66E-19,CpGisland,TRUE,U13,Hc-P
24298,cg25020809,-0.0000328,0.0000138,-2.37791628,0.01801677,loss,ns,-0.0000228,0.0000234,-0.972638954,0.331491087,neg,ns,-0.012168107,0.0068648,-1.772536183,0.077287637,neg,ns,1.11188997,0.000111477,0.00023608,0.4721988,0.637117119,pos,ns,0.394592697,Pou3f1,Pou3f1_Intron,4,124551261,124551310,124551261,124551262,50,-,CGAGTTTTGAAAATAATTAAAATTGAAAATTGATTGTCTGGGCCAAAGCA,"Intron (Gm2164-201/Gm2164-201, intron 1 of 1)",4,124656807,124660655,3849,1,Pou3f1-201,-105546,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,43,85,18991,ENSMUSG00000090125,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22989,cg24919945,-0.00000403,0.00000172,-2.347464971,0.019530323,loss,ns,-0.00000284,0.00000292,-0.972630801,0.331495134,neg,ns,-0.001613108,0.000854873,-1.886955524,0.060100537,neg,ns,1.221121649,-0.00000325,0.0000294,-0.110533067,0.912058151,neg,ns,0.030027806,Cnot2,Cnot2_fiveUTR,10,116581453,116581502,116581453,116581454,50,+,CGCATGAATTTTCTTGTCCCGCGGATCCAAGATGGCGACGTATCCACCGC,Promoter (<=1kb),10,116485165,116581496,96332,2,Cnot2-212,0,Cnot2-210;Cnot2-212;Cnot2-203;Cnot2-202;Cnot2-213;Cnot2-209;Cnot2-214;Cnot2-215;Cnot2-205;Cnot2-207;Cnot2-211;Cnot2-217;Cnot2-216;Cnot2-206;Cnot2-201;Cnot2-208;Cnot2-218,Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,6,15,72068,ENSMUSG00000020166,conserved gene and region,10,116580884,116582169,1286,*,1286,165,0.732503888,0.960135747,0.128304821,1.12E-144,CpGisland,TRUE,U1,Pr-A
16389,cg01413040,0.0000434,0.0000195,2.223352051,0.026912714,gain,ns,-0.0000323,0.0000332,-0.972612542,0.331504198,neg,ns,0.003661453,0.009721848,0.3766211,0.706712856,pos,ns,0.150757008,-0.000496601,0.000334334,-1.485346646,0.138468204,neg,ns,0.715974806,Dand5,Dand5_Intergenic_downstream,8,84814544,84814593,84814544,84814545,50,-,CGGCTGGCGGGCTTTAATACAGATGCCAAACTCATAATTGTAACTGAGGG,Distal Intergenic,8,84815404,84822823,7420,2,Dand5-201,8279,Dand5-201;Dand5-202,Dand5;Dand5,8230;17816,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,3,23863,ENSMUSG00000053226,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
12629,cg10820794,-0.0000179,0.00000833,-2.15410721,0.032002196,loss,ns,-0.0000138,0.0000142,-0.9725474,0.331536535,neg,ns,0.001915928,0.00414631,0.462080289,0.644347866,pos,ns,0.190879606,-0.000214331,0.000142591,-1.503115515,0.133827269,neg,ns,0.907334678,Lman1,Lman1_Intron,18,66015584,66015633,66015584,66015585,50,+,CGCTTGTGATTTTCAGAAAACCATTCTAATTTAGCAAGTAATTAAGGGTC,"Intron (Lman1-205/Lman1, intron 1 of 7)",18,65993128,66019778,26651,2,Lman1-205,4145,Lman1-205;Lman1-203,Lman1;Lman1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,70361,ENSMUSG00000041891,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20674,cg07734379,-0.000107238,0.0000145,-7.386362385,1.41E-12,loss,yes,0.000024,0.0000247,0.972532552,0.331543906,pos,ns,-0.017421733,0.007225944,-2.410997409,0.016490407,neg,ns,1.782768632,0.000137835,0.0002485,0.554669502,0.579520695,pos,ns,0.780425265,Kansl1,Kansl1_Exon,11,104425154,104425203,104425202,104425203,50,-,CCGGATATGGTGTGCTTCAGCTGCTGCGTCAGTGAGAGCGGGCGCCATCG,"Exon (Kansl1-205/Kansl1, exon 2 of 14)",11,104333229,104442291,109063,2,Kansl1-205,17088,Kansl1-205;Kansl1-204;Kansl1-201;Kansl1-203;Kansl1-206,Kansl1;Kansl1;Kansl1;Kansl1;Kansl1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,11,76719,ENSMUSG00000018412,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
3855,cg27419851,0.000129064,0.000011,11.68103879,2.28E-26,gain,yes,0.0000183,0.0000188,0.972505159,0.331557504,pos,ns,0.017246419,0.005499204,3.136166441,0.0018759,pos,ns,2.726790379,0.00012075,0.000189117,0.638495524,0.523622583,pos,ns,0.373769885,Dmrt3,Dmrt3_Promoter,19,25604587,25604636,25604587,25604588,50,-,CGGTATCGATTGATCCTGATATATCACAGAAATTTACTGTCACTTCTGTT,Promoter (5-6kb),19,25610301,25610867,567,1,Dmrt3-202,-5714,Dmrt1-201;Dmrt1-202,Dmrt1;Dmrt1,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,Promoter,3,5,240590,ENSMUSG00000042372,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
16892,cg11102842,0.0000171,0.0000118,1.443130286,0.149993472,gain,ns,0.0000196,0.0000201,0.972402108,0.331608666,pos,ns,0.026056913,0.005897682,4.418161522,0.0000138,pos,ns,4.860868795,-0.000711795,0.000202821,-3.509479575,0.000515521,neg,ns,0.442285555,Gm18602,Gm18602_Intron,8,87121789,87121838,87121789,87121790,50,+,CGAGGTGACAGAGATTAATAGCTTGGTATTGACTGAGCAACTTCGAGTTC,"Intron (Gm27246-201/Gm27246-201, intron 2 of 7)",8,87051397,87052247,851,2,Gm18602-201,-69542,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,100417420,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12481,cg00578263,0.0000292,0.00000798,3.656146978,0.00030067,gain,ns,0.0000132,0.0000136,0.972363414,0.331627878,pos,ns,-0.001778104,0.003971715,-0.447691733,0.654688371,neg,ns,0.183965373,0.000202741,0.000136587,1.484335155,0.138736091,pos,ns,0.592099459,Megf11,Megf11_Intron,9,64543361,64543410,64543361,64543362,50,+,CGTGATAAGAAATTGCCAGGCACTTTCTAATTACAATTATCATCATCGTG,"Intron (Megf11-202/Megf11, intron 4 of 22)",9,64385626,64700975,315350,1,Megf11-202,157735,Megf11-202;Megf11-203;Megf11-210;Megf11-207;Megf11-201;Megf11-205;Megf11-206,Megf11;Megf11;Megf11;Megf11;Megf11;Megf11;Megf11,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,7,214058,ENSMUSG00000036466,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4209,cg09529245,-0.0000233,0.0000069,-3.368482734,0.000851239,loss,ns,0.0000114,0.0000117,0.972286156,0.331666239,pos,ns,0.000161867,0.003435539,0.047115422,0.962451574,pos,ns,0.016621113,-0.000259115,0.000118148,-2.193138808,0.029039958,neg,ns,0.882228214,Gm7729,Gm7729_Intergenic_downstream,18,27629535,27629584,27629535,27629536,50,+,CGTTCAGAAAAAGCAGTCACCCAATACATGAGATTGTGACAAGGTATAAT,Distal Intergenic,18,27598644,27599756,1113,1,Gm7729-201,30891,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,22,665646,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8815,cg02322553,-0.0000182,0.00000395,-4.597956486,0.00000622,loss,ns,-0.00000652,0.00000671,-0.972126783,0.331745381,neg,ns,0.000423878,0.001965384,0.215672101,0.829385182,pos,ns,0.081243728,-0.0000946,0.0000676,-1.400277203,0.162430378,neg,ns,0.945667662,Bace1,Bace1_Exon,9,45854735,45854784,45854735,45854736,50,-,CGTCACTGTGCGTGCCAACATTGCTGCCATCACTGAATCAGACAAGTTCT,"Exon (Bace1-202/Bace1, exon 3 of 8)",9,45838580,45862484,23905,1,Bace1-202,16155,Bace1-202;Bace1-201;Bace1-203;Bace1-205;Bace1-204;Bace1-206,Bace1;Bace1;Bace1;Bace1;Bace1;Bace1,0;0;0;14817;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,Exon,1,1,23821,ENSMUSG00000032086,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3637,cg06600309,0.00000167,0.00000156,1.0695228,0.285666219,gain,ns,-0.00000257,0.00000265,-0.972071324,0.331772925,neg,ns,0.001782876,0.0007755,2.299001135,0.022169662,pos,ns,1.654240933,-0.0000451,0.0000267,-1.689385982,0.092150904,neg,ns,0.957732296,Med23,Med23_Intron,10,24884115,24884164,24884115,24884116,50,+,CGTTACTGTTTGCAATACTATAGTGAAGGTTGTGCCAGTGCTTCCATTTA,"Intron (Med23-202/Med23, intron 11 of 29)",10,24869986,24913681,43696,1,Med23-202,14129,Med23-202;Med23-210;Med23-209;Med23-201;Med23-207;Med23-206;Med23-204,Med23;Med23;Med23;Med23;Med23;Med23;Med23,0;0;0;0;0;0;-4287,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,2,70208,ENSMUSG00000019984,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9323,cg00815761,-0.00000227,0.00000591,-0.383641641,0.70150705,loss,ns,0.00000977,0.00001,0.971991692,0.331812476,pos,ns,-0.00025652,0.002943843,-0.087137794,0.930618242,neg,ns,0.031228439,-0.0000488,0.000101239,-0.482359205,0.629891203,neg,ns,0.88775187,Gm13471,Gm13471_Intron,2,48154880,48154929,48154928,48154929,50,-,AAAATATGAAAACTAATAATGAGCCAGATTCTCCCACCACATTCCACCCG,"Intron (Gm13481-201/Gm13481-201, intron 3 of 5)",2,48140146,48140578,433,1,Gm13471-201,14783,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,10,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20950,cg07889054,0.000125861,0.0000168,7.501490174,6.71E-13,gain,yes,-0.0000277,0.0000285,-0.971951257,0.33183256,neg,ns,0.029654864,0.008350666,3.55119736,0.000443026,pos,ns,3.353570992,-0.000774109,0.000287179,-2.695566136,0.007410479,neg,ns,0.434452002,Lrrc8d,Lrrc8d_Exon,5,105811777,105811826,105811777,105811778,50,+,CGAATCCTGAAACCATGGTGGGATGTGTTTATGGATTACCTAGCTGTTGT,"Exon (Lrrc8d-201/Lrrc8d, exon 3 of 3)",5,105699969,105815215,115247,1,Lrrc8d-201,111808,Lrrc8d-201;Lrrc8d-202;Lrrc8d-210;Lrrc8d-203;Lrrc8d-208;Lrrc8d-209;Lrrc8d-206,Lrrc8d;Lrrc8d;Lrrc8d;Lrrc8d;Lrrc8d;Lrrc8d;Lrrc8d,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,3,231549,ENSMUSG00000046079,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12320,cg08214323,-0.00000174,0.00000183,-0.950923772,0.342383862,loss,ns,0.00000302,0.00000311,0.971870801,0.331872525,pos,ns,0.001053518,0.00091172,1.155529096,0.248763663,pos,ns,0.604213056,-0.000000343,0.0000314,-0.010936348,0.991281265,neg,ns,0.035504732,Klf13,Klf13_Exon,7,63937973,63938022,63938021,63938022,50,-,GAGTTCTCAGGTGCGCCTTGAGGTGCGAAGATTTCCCGTAAACTTTCTCG,Promoter (<=1kb),7,63886351,63938915,52565,2,Klf13-201,893,Klf13-201;Klf13-204;Klf13-203,Klf13;Klf13;Klf13,0;-1672;-1641,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,50794,ENSMUSG00000052040,conserved gene and region,7,63937474,63939319,1846,*,1846,236,0.74539545,0.922017426,0.127843987,3.53E-206,CpGisland,TRUE,U1,Pr-A
16252,cg24373438,0.0000556,0.00000679,8.184300734,7.18E-15,gain,yes,0.0000112,0.0000115,0.971716549,0.331949155,pos,ns,0.018221,0.003380208,5.390496328,0.000000139,pos,ns,6.855642077,-0.000360055,0.000116245,-3.097374243,0.002131059,neg,ns,0.153604482,Bnc2,Bnc2_fiveUTR,4,84672357,84672406,84672405,84672406,50,+,TGTTCTTCATTAACTGCGGCTCTCTGGGGATGTCACACACTACCTGTCCG,5' UTR,4,84275095,84675034,399940,2,Bnc2-201,2628,Bnc2-201;Bnc2-202;Bnc2-214;Bnc2-215;Bnc2-206;Bnc2-211;Bnc2-217;Bnc2-207;Bnc2-203;Bnc2-209;Bnc2-204;Bnc2-210,Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,8,91,242509,ENSMUSG00000028487,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
21543,cg24934277,-0.0000103,0.00000443,-2.316602028,0.021177102,loss,ns,-0.00000731,0.00000753,-0.971599271,0.332007425,neg,ns,-0.003013579,0.002205414,-1.366446144,0.172789264,neg,ns,0.762483246,-0.0000197,0.0000758,-0.259577433,0.795362047,neg,ns,0.909167716,Dag1,Dag1_threeUTR,9,108206804,108206853,108206852,108206853,50,+,TTAATCTTTAGTTACTGTTTTCCATGTTACATCCTGCAGCTAGACACACG,3' UTR,9,108204634,108263958,59325,2,Dag1-204,57105,Dag1-204;Dag1-201;Dag1-202;Dag1-203,Dag1;Dag1;Dag1;Dag1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,2,13138,ENSMUSG00000039952,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9291,cg07724127,-0.000101977,0.0000166,-6.133967427,2.61E-09,loss,yes,0.0000274,0.0000282,0.971524557,0.332044551,pos,ns,-0.016956703,0.008274435,-2.049288423,0.041275299,neg,ns,1.384309776,0.00024969,0.000284557,0.87747055,0.380910627,pos,ns,0.765957113,Nr4a3,Nr4a3_Intergenic_upstream,4,47948976,47949025,47949024,47949025,50,+,AAGAACAGCTTGTGTAATGAACTTCCTGTTTTCATCATATTTGGACACCG,Distal Intergenic,4,48045153,48086445,41293,1,Nr4a3-201,-96128,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,20,18124,ENSMUSG00000028341,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1055,cg21932557,0.00000565,0.00000374,1.511406851,0.131703505,gain,ns,0.00000617,0.00000635,0.971246541,0.332182721,pos,ns,-0.0000964,0.001861638,-0.051761465,0.958752098,neg,ns,0.018293673,-0.0000979,0.000064,-1.529443787,0.127174199,neg,ns,0.919416738,Vsnl1,Vsnl1_threeUTR,12,11326303,11326352,11326351,11326352,50,-,CAGCTCATTTCTGGATGTCGCACTGCAGAAGTAATACAATGGAAGGGTCG,3' UTR,12,11325242,11435640,110399,2,Vsnl1-202,109288,Vsnl1-202;Vsnl1-201,Vsnl1;Vsnl1,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,6,26950,ENSMUSG00000054459,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16002,cg16036157,0.000011,0.0000133,0.822529563,0.411407796,gain,ns,-0.000022,0.0000226,-0.971136892,0.332237225,neg,ns,0.009666832,0.006630886,1.4578492,0.145894415,pos,ns,0.835961333,-0.000042,0.000228036,-0.184021416,0.854116968,neg,ns,0.502397292,Zfp407,Zfp407_Intron,18,84129917,84129966,84129917,84129918,50,+,CGTTCACTTCTTGGCAGTTCTGAAACAAATTTTTGAACAGTTGCTGTTCC,"Intron (Zfp407-201/Zfp407, intron 2 of 2)",18,84128027,84558425,430399,2,Zfp407-201,428459,Zfp407-201,Zfp407,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,32,240476,ENSMUSG00000048410,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12834,cg02366398,0.00000136,0.0000034,0.401179918,0.688564054,gain,ns,-0.0000056,0.00000577,-0.970787167,0.332411104,neg,ns,-0.001668101,0.001691298,-0.986284688,0.324762589,neg,ns,0.488434004,0.0000663,0.0000582,1.140249954,0.25506237,pos,ns,0.946729017,Serbp1,Serbp1_Exon,6,67271984,67272033,67271984,67271985,50,-,CGTGGCAAACGTGAATTTGATAGGCATAGTGGAAGTGATAGATCGTAAGT,"Exon (Serbp1-201/Serbp1, exon 3 of 8)",6,67266624,67297736,31113,1,Serbp1-201,5360,Serbp1-213;Serbp1-201;Serbp1-207;Serbp1-214;Serbp1-216;Serbp1-211;Serbp1-204;Serbp1-215;Serbp1-203;Serbp1-202;Serbp1-205;Serbp1-212;Serbp1-206;Serbp1-208;Serbp1-209;Serbp1-210,Serbp1;Serbp1;Serbp1;Serbp1;Serbp1;Serbp1;Serbp1;Serbp1;Serbp1;Serbp1;Serbp1;Serbp1;Serbp1;Serbp1;Serbp1;Serbp1,33808;0;0;4996;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,3,66870,ENSMUSG00000036371,conserved gene and region,6,67271889,67272028,140,*,140,13,0.557142857,1.438735178,0.092857143,8.21E-10,CpGisland,TRUE,U10,Tr-S
25212,cg16201546,0.000029,0.00000622,4.656638441,0.00000477,gain,ns,0.0000103,0.0000106,0.97067623,0.332466273,pos,ns,0.022078478,0.003096627,7.129848278,7.11E-12,pos,yes,11.1483586,-0.000414069,0.000106493,-3.888234263,0.000123559,neg,ns,0.055821629,Arid1a,Arid1a_Intron,4,133729740,133729789,133729740,133729741,50,-,CGCCCACTGAGAGCCAAACACAGGAAAAGGCTTTTCCTGTGGAACGCCTT,"Intron (Arid1a-202/Arid1a, intron 1 of 19)",4,133679008,133753611,74604,2,Arid1a-202,23822,Arid1a-202;Arid1a-205;Arid1a-201;Arid1a-203,Arid1a;Arid1a;Arid1a;Arid1a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,31,93760,ENSMUSG00000007880,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U5,En-Sd
13324,cg22300018,0.000017,0.00000466,3.635373871,0.00032488,gain,ns,-0.00000769,0.00000792,-0.970655459,0.332476603,neg,ns,-0.007234851,0.00232126,-3.116776847,0.001999687,neg,ns,2.69903806,0.0000936,0.0000798,1.172294946,0.241978758,pos,ns,0.834747975,Gm44690,Gm44690_Intergenic_upstream,7,70104563,70104612,70104611,70104612,50,-,CTGTCATCCCTTCACCCTAAAAGCCTTATAATTGCTTTTATTTGCATACG,Distal Intergenic,7,69883979,69884360,382,2,Gm44690-201,-220252,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,15,24,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13900,cg18677653,0.0000355,0.00000361,9.850563625,4.28E-20,gain,yes,-0.00000595,0.00000613,-0.970469946,0.332568874,neg,ns,0.003986288,0.001795945,2.219604869,0.027168981,pos,ns,1.56592665,-0.0000261,0.0000618,-0.421981337,0.67333113,neg,ns,0.10359884,Sp9,Sp9_threeUTR,2,73276390,73276439,73276438,73276439,50,-,AGGCTTTTTAATGTTATGGAAGACAACTGCTCCTTTCCTTTTCAAAGACG,3' UTR,2,73271925,73277471,5547,1,Sp9-201,4465,Sp9-201;Sp9-202,Sp9;Sp9,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,10,21,381373,ENSMUSG00000068859,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
21797,cg16404365,0.0000129,0.0000086,1.496983684,0.135414944,gain,ns,-0.0000142,0.0000146,-0.970444284,0.332581639,neg,ns,0.001153867,0.004279751,0.269610682,0.787639156,pos,ns,0.103672702,-0.0000892,0.00014718,-0.605855537,0.545054018,neg,ns,0.013959558,Lmo1,Lmo1_fiveUTR,7,109169983,109170032,109169983,109169984,50,+,CGTCCTCCTTGTCCAGCACCATCATCTCGGGCGCTCCGTGTCCAGCCGCA,Promoter (<=1kb),7,109138572,109170519,31948,2,Lmo1-201,487,Lmo1-201;Lmo1-202;Lmo1-203,Lmo1;Lmo1;Lmo1,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,66,109594,ENSMUSG00000036111,conserved gene but different region,7,109169630,109170130,501,*,501,61,0.724550898,0.930262998,0.121756487,2.91E-52,CpGisland,TRUE,U3,Pr-B
16188,cg10707128,0.000128893,0.00000928,13.88236866,2.08E-34,gain,yes,-0.0000153,0.0000158,-0.97042715,0.332590162,neg,ns,0.00996824,0.004621085,2.157120934,0.031764546,pos,ns,1.498057348,-0.0000429,0.000158919,-0.269817571,0.787480125,neg,ns,0.305384978,Vsx2,Vsx2_Exon,12,84569965,84570014,84569965,84569966,50,-,CGCTGAGCAAGCCCAAATCCGAGACAGTGGCCAAGAGTACCTCGGGGGGC,Promoter (<=1kb),12,84569762,84595457,25696,1,Vsx2-201,203,Vsx2-201;Vsx2-202,Vsx2;Vsx2,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,20,12677,ENSMUSG00000021239,conserved gene and region,12,84569841,84570039,199,*,199,16,0.693467337,0.689625298,0.08040201,5.23E-11,CpGisland,TRUE,U13,Hc-P
20965,cg09347295,-0.000022,0.0000121,-1.820875528,0.069589691,loss,ns,0.00002,0.0000206,0.970317255,0.332644832,pos,ns,0.000723672,0.006025537,0.120100854,0.904481055,pos,ns,0.043600525,-0.000212441,0.000207218,-1.025206051,0.306065287,neg,ns,0.767743457,Zfp326,Zfp326_Exon,5,105888480,105888529,105888528,105888529,50,-,CGAGATCTGTACAGATCTGGCTATGGTTTTAATGAACCCGAACAAAGCCG,"Exon (Zfp326-201/Zfp326, exon 5 of 12)",5,105876565,105914780,38216,1,Zfp326-209,11915,Zfp326-209;Zfp326-208;Zfp326-201;Zfp326-205;Zfp326-206;Zfp326-202;Zfp326-203;Zfp326-204,Zfp326;Zfp326;Zfp326;Zfp326;Zfp326;Zfp326;Zfp326;Zfp326,0;0;0;0;0;11539;0;-2415,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,11,54367,ENSMUSG00000029290,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14777,cg24844787,-0.00000465,0.00000164,-2.837069461,0.004852877,loss,ns,-0.0000027,0.00000279,-0.970188998,0.332708644,neg,ns,-0.000563034,0.000816575,-0.689506265,0.491020522,neg,ns,0.308900356,0.00000314,0.0000281,0.111811079,0.911045564,pos,ns,0.964597359,Enox1,Enox1_Exon,14,77611299,77611348,77611347,77611348,50,-,TGGCCGTTTTCAACGCTTCTACCAGACAAAAAGCTTGGGACCATTTCTCG,"Exon (Enox1-201/Enox1, exon 12 of 19)",14,77156763,77721407,564645,1,Enox1-201,454536,Enox1-201;Enox1-204;Enox1-203,Enox1;Enox1;Enox1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,4,239188,ENSMUSG00000022012,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3295,cg14475919,0.0000011,0.00000113,0.969097754,0.333251894,gain,ns,-0.00000186,0.00000192,-0.97009983,0.332753013,neg,ns,-0.000170732,0.000562791,-0.303366213,0.761814284,neg,ns,0.118150889,-0.00000184,0.0000194,-0.095231902,0.924192159,neg,ns,0.969384222,Srpk2,Srpk2_threeUTR,5,23507663,23507712,23507711,23507712,50,+,TCCACAAGTACATCAAAGAGGCTCCAGGGCTTCAGCTTGGTGATGTGTCG,3' UTR,5,23503264,23616534,113271,2,Srpk2-201,108822,Kmt2e-201;Kmt2e-202;Kmt2e-206;Srpk2-201;Srpk2-204,Kmt2e;Kmt2e;Kmt2e;Srpk2;Srpk2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,8,20817,ENSMUSG00000062604,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4516,cg05348516,-0.00000168,0.00000381,-0.441348548,0.659268356,loss,ns,0.00000628,0.00000648,0.970030028,0.332787748,pos,ns,0.005158753,0.001898019,2.717966895,0.006937984,pos,ns,2.158766694,-0.000118562,0.0000653,-1.816403271,0.070274255,neg,ns,0.904994617,Calu,Calu_threeUTR,6,29361683,29361732,29361731,29361732,50,+,GTTTGATATGAATCAAGACGGCTTAATCTCCTGGGATGAGTACAGAAACG,3' UTR,6,29348069,29374503,26435,1,Calu-207,13614,Calu-207;Calu-208;Calu-206;Calu-201;Calu-202;Calu-209;Calu-204,Calu;Calu;Calu;Calu;Calu;Calu;Calu,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,9,12321,ENSMUSG00000029767,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24133,cg21043621,0.00000544,0.00000348,1.56232456,0.119231794,gain,ns,-0.00000574,0.00000591,-0.970002549,0.332801423,neg,ns,0.004851505,0.001732702,2.799965075,0.005431496,pos,ns,2.265080548,-0.000249954,0.0000596,-4.194735142,0.0000357,neg,ns,0.907418672,Kdm2b,Kdm2b_Exon,5,122879497,122879546,122879497,122879498,50,-,CGGTTGATGAGCCAGCTCAGCTGCTTCTTGGAGATATTGGTCCAGCTGAG,"Exon (Kdm2b-202/Kdm2b, exon 20 of 23)",5,122870665,122989099,118435,2,Kdm2b-202,109553,Kdm2b-202;Kdm2b-201;Kdm2b-204;Kdm2b-203;Kdm2b-207;Kdm2b-205;Kdm2b-212;Kdm2b-217;Kdm2b-209;Kdm2b-219;Kdm2b-208;Kdm2b-220,Kdm2b;Kdm2b;Kdm2b;Kdm2b;Kdm2b;Kdm2b;Kdm2b;Kdm2b;Kdm2b;Kdm2b;Kdm2b;Kdm2b,0;0;0;0;0;0;0;0;0;38178;42561;42002,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,6,30841,ENSMUSG00000029475,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3685,cg27660120,0.00000319,0.00000204,1.559170617,0.119976278,gain,ns,0.00000337,0.00000347,0.969801243,0.332901613,pos,ns,0.002040028,0.001017749,2.0044515,0.045891162,pos,ns,1.338270949,-0.000100997,0.000035,-2.885614341,0.00418053,neg,ns,0.964367573,Kidins220,Kidins220_Exon,12,25040452,25040501,25040500,25040501,50,+,ATAGCCATTCTTTGCCCCATACCTTTACACGCCAAGGTATTACCCTGGCG,"Exon (Kidins220-201/Kidins220, exon 25 of 32)",12,24974925,25059697,84773,1,Kidins220-201,65527,Kidins220-201;Kidins220-202;Kidins220-210;Kidins220-208;Kidins220-206;Kidins220-203,Kidins220;Kidins220;Kidins220;Kidins220;Kidins220;Kidins220,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,77480,ENSMUSG00000036333,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5316,cg06454821,0.0000825,0.00000578,14.2583666,8.10E-36,gain,yes,-0.00000953,0.00000983,-0.969792712,0.332905859,neg,ns,0.012404698,0.002879224,4.308347374,0.0000221,pos,ns,4.655443982,-0.000122891,0.000099,-1.241121263,0.215499308,neg,ns,0.097348843,Nkx1-1,Nkx1-1_Promoter,5,33432988,33433037,33432988,33432989,50,-,CGATCAATAGCGGCCCCTAATAAGTGTAATAGGTTTTAATCGAGTAATTA,Promoter (<=1kb),5,33430734,33433976,3243,2,Nkx1-1-201,939,Nkx1-1-201,Nkx1-1,0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,8,13,672284,ENSMUSG00000029112,conserved gene but different region,5,33432835,33433235,401,*,401,27,0.518703242,1.022283071,0.067331671,3.24E-16,CpGisland,TRUE,U13,Hc-P
84,cg05698015,0.0000169,0.00000136,12.37451963,7.43E-29,gain,yes,0.00000224,0.00000231,0.969747666,0.332928282,pos,ns,0.000365437,0.000678081,0.53892842,0.590323053,pos,ns,0.228910257,0.0000116,0.0000233,0.498472115,0.6185048,pos,ns,0.030862744,Plag1,Plag1_Promoter,4,3937785,3937834,3937833,3937834,50,+,TTTTCCCTTATTTTTCGGGTCTCTAATGTCTTCCGCTCTCGCTGCTGCCG,Promoter (<=1kb),4,3900996,3938382,37387,2,Plag1-201,548,Chchd7-202;Chchd7-206;Chchd7-213;Chchd7-207;Chchd7-208;Chchd7-201;Chchd7-205;Chchd7-214;Chchd7-203;Chchd7-209;Chchd7-210;Chchd7-211;Chchd7-204;Plag1-201;Plag1-202;Plag1-204;Plag1-203,Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Plag1;Plag1;Plag1;Plag1,-1054;-1054;-1056;-1080;-1080;-1080;-1080;-1080;-1086;-1209;-1588;-1666;-3020;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,8,22,56711,ENSMUSG00000003282,conserved gene and region,4,3937683,3937840,158,*,158,13,0.537974684,1.156531532,0.082278481,3.81E-09,CpGisland,TRUE,U1,Pr-A
18454,cg17933425,-0.00000177,0.00000111,-1.595998164,0.111508091,loss,ns,-0.00000183,0.00000188,-0.96971745,0.332943322,neg,ns,0.000755628,0.00055192,1.369089356,0.171962465,pos,ns,0.764566338,-0.0000375,0.000019,-1.977205001,0.048904137,neg,ns,0.967229217,Cnot1,Cnot1_threeUTR,8,95772087,95772136,95772135,95772136,50,-,TGGAAGCCACCTTCTTGATTTCCACTGACGTCTGCGTCAATGTAAGAACG,3' UTR,8,95719451,95807462,88012,2,Cnot1-202,35326,Cnot1-202;Cnot1-201;Cnot1-203;Cnot1-216;Cnot1-217;Cnot1-207;Cnot1-209,Cnot1;Cnot1;Cnot1;Cnot1;Cnot1;Cnot1;Cnot1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,8,24,234594,ENSMUSG00000036550,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26513,cg01199420,0.0000198,0.00000986,2.009059794,0.045397428,gain,ns,-0.0000162,0.0000167,-0.969624217,0.332989735,neg,ns,0.010061064,0.004905356,2.051036269,0.041103668,pos,ns,1.386119423,0.0000719,0.000168695,0.426222228,0.670241721,pos,ns,0.328219144,Casz1,Casz1_Intron,4,148860210,148860259,148860210,148860211,50,-,CGTCTTTTCATCAAAATTCAGTTACTTTGGCTCCTGTGTGCAATGTACTG,"Intron (Casz1-201/Casz1, intron 2 of 15)",4,148804429,148945129,140701,1,Casz1-201,55781,Casz1-201;Casz1-202,Casz1;Casz1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,94,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
7975,cg20682781,0.0000392,0.0000038,10.29235507,1.45E-21,gain,yes,-0.00000627,0.00000646,-0.969518154,0.33304254,neg,ns,0.005863968,0.001893694,3.096575649,0.002136633,pos,ns,2.670270093,-0.000110501,0.0000651,-1.696782225,0.090741601,neg,ns,0.110151633,Pax2,Pax2_Intergenic_upstream,19,44671350,44671399,44671398,44671399,50,+,GATAAATAATAACTTACAAACAGGATTAGTTGTAAAGTCACGCTCCGGCG,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-84646,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,19,44671390,44671489,100,*,100,13,0.74,1.06122449,0.13,8.74E-12,CpGisland,TRUE,U13,Hc-P
26401,cg05292023,0.0000131,0.00000432,3.033328387,0.002623217,gain,ns,-0.00000712,0.00000734,-0.969321603,0.333140409,neg,ns,0.001466366,0.002151023,0.681706427,0.495933579,pos,ns,0.304576486,-0.000108566,0.000074,-1.467639735,0.143215939,neg,ns,0.074654,Gsx1,Gsx1_Intergenic_downstream,5,147223601,147223650,147223601,147223602,50,+,CGGTGCCTGCAGCTGATTTGATGGGTTGGAAATGCGCACGAAACAAAATA,Distal Intergenic,5,147188696,147190947,2252,1,Gsx1-201,34905,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,12,20,14842,ENSMUSG00000053129,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
23575,cg06878498,-0.00000776,0.00000772,-1.005838695,0.315277629,loss,ns,0.0000127,0.0000131,0.969238452,0.333181819,pos,ns,0.017201451,0.003842276,4.476891582,0.0000107,pos,ns,4.972425512,-0.000654165,0.000132136,-4.950713555,0.00000122,neg,yes,0.160844752,Cbx8,Cbx8_Promoter,11,119042868,119042917,119042868,119042869,50,-,CGGTGCCAGCGATACAGCTGTTTCTGTTTAAGCTTAAATACTTTCCAACA,Promoter (1-2kb),11,119036305,119040969,4665,2,Cbx8-201,-1948,Cbx8-201;Cbx8-202;Cbx8-203,Cbx8;Cbx8;Cbx8,0;-2037;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,4,6,30951,ENSMUSG00000025578,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
13269,cg05304748,-0.0000276,0.00000845,-3.262081156,0.001229288,loss,ns,0.0000139,0.0000144,0.969152656,0.333224548,pos,ns,0.006173975,0.004207648,1.46732206,0.143302249,pos,ns,0.843746995,-0.000248639,0.000144701,-1.71829702,0.086740913,neg,ns,0.811480812,Pebp4,Pebp4_Intron,14,69970404,69970453,69970404,69970405,50,+,CGTTATGGAAACCAATTCTGCCATCCAGGAGAATTCCTGGATCAGGCAGA,"Intron (Pebp4-201/Pebp4, intron 4 of 6)",14,69840420,70059918,219499,1,Pebp4-201,129984,Pebp4-201,Pebp4,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,14,14,73523,ENSMUSG00000022085,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1687,cg05388899,-0.00000714,0.00000343,-2.080775456,0.038275236,loss,ns,0.00000565,0.00000583,0.969113197,0.333244202,pos,ns,0.001367232,0.001707656,0.800648328,0.423948439,pos,ns,0.37268696,0.00000134,0.0000587,0.022880827,0.981760055,pos,ns,0.932215791,Tle4,Tle4_Exon,19,14544799,14544848,14544799,14544800,50,-,CGTTCAGTTCTGCCATGGTCACCTGCTTGGCCCGTTCCACAGCCTGCACC,"Exon (Tle4-201/Tle4, exon 6 of 20)",19,14448150,14598051,149902,2,Tle4-201,53203,Tle4-201;Tle4-202;Tle4-203,Tle4;Tle4;Tle4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,29,21888,ENSMUSG00000024642,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14581,cg19736749,-0.00000153,0.00000309,-0.494951162,0.620985209,loss,ns,-0.00000509,0.00000526,-0.969109886,0.333245851,neg,ns,0.000492129,0.00153986,0.31959329,0.749491932,pos,ns,0.125233038,-0.00000229,0.000053,-0.04327603,0.96550936,neg,ns,0.927061564,Cyhr1,Cyhr1_Exon,15,76649107,76649156,76649155,76649156,50,+,GCTCCTCCTTCAGCCGGGCATCTGCTAGTAGGTGGATAAAACAGCCAGCG,"Exon (Cyhr1-202/Cyhr1, exon 3 of 5)",15,76643395,76660061,16667,2,Cyhr1-202,10905,Cyhr1-202;Cyhr1-203;Cyhr1-207;Cyhr1-205;Cyhr1-206,Cyhr1;Cyhr1;Cyhr1;Cyhr1;Cyhr1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,54151,ENSMUSG00000053929,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19980,cg15356666,-0.0000163,0.00000397,-4.119199199,0.0000488,loss,ns,-0.00000653,0.00000674,-0.969064395,0.33326851,neg,ns,-0.001532205,0.001973548,-0.776370518,0.43812219,neg,ns,0.35840475,-0.0000304,0.0000679,-0.448050865,0.654429455,neg,ns,0.939721171,Lmo7,Lmo7_Exon,14,101913146,101913195,101913194,101913195,50,-,ATGTGCCAATCAGACTGGGGCAAAGACCAACCTTCCCTGCCATTTATACG,"Exon (Lmo7-206/Lmo7, exon 13 of 26)",14,101729957,101934710,204754,1,Lmo7-201,183189,Lmo7-201;Lmo7-204;Lmo7-205;Lmo7-212;Lmo7-206;Lmo7-209,Lmo7;Lmo7;Lmo7;Lmo7;Lmo7;Lmo7,0;0;0;72327;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,380928,ENSMUSG00000033060,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2601,cg10095878,-0.0000118,0.00000212,-5.536658918,6.58E-08,loss,yes,-0.0000035,0.00000361,-0.969060185,0.333270607,neg,ns,-0.000870105,0.001057457,-0.822828023,0.411238286,neg,ns,0.38590646,-0.0000376,0.0000364,-1.033973951,0.301954275,neg,ns,0.956090816,Sec24c,Sec24c_Exon,14,20686569,20686618,20686569,20686570,50,+,CGGGGCCAGGTGCCACCCTTAGTCACTACCAACTTCCTGGTGAAAGACCA,"Exon (Sec24c-201/Sec24c, exon 7 of 23)",14,20674308,20694852,20545,1,Sec24c-201,12261,Sec24c-201;Sec24c-204;Sec24c-202;Sec24c-210;Sec24c-212;Sec24c-215;Sec24c-208;Sec24c-209;Sec24c-213,Sec24c;Sec24c;Sec24c;Sec24c;Sec24c;Sec24c;Sec24c;Sec24c;Sec24c,0;0;0;0;12163;0;-2456;-3027;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,218811,ENSMUSG00000039367,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25266,cg04226713,-0.0000045,0.00000165,-2.729555019,0.006704386,loss,ns,-0.00000272,0.0000028,-0.96903409,0.333283605,neg,ns,-0.001818923,0.000821326,-2.214617979,0.02751331,neg,ns,1.560457151,0.0000671,0.0000282,2.376142278,0.018102027,pos,ns,0.97796091,Etv6,Etv6_Exon,6,134261707,134261756,134261755,134261756,50,+,GATTACGTCTATCAGTTGCTTTCTGACAGCCGGTACGAAAACTTCATCCG,"Exon (Etv6-201/Etv6, exon 6 of 8)",6,134035700,134270155,234456,1,Etv6-201,226007,Etv6-201;Etv6-202;Etv6-205,Etv6;Etv6;Etv6,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,7,14011,ENSMUSG00000030199,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7321,cg25856090,-0.0000314,0.00000719,-4.370296418,0.000017,loss,ns,0.0000118,0.0000122,0.968971244,0.333314911,pos,ns,-0.00157373,0.003576373,-0.440035115,0.66021831,neg,ns,0.180312435,0.0000882,0.000122991,0.71727289,0.473745836,pos,ns,0.85955201,Clcn1,Clcn1_threeUTR,6,42299564,42299613,42299564,42299565,50,+,CGAAAGCACAAGGCCCTCAGCCAGTTTCTTGCTAAGCAGTGAGTCACTGC,3' UTR,6,42286685,42314656,27972,1,Clcn1-201,12879,Clcn1-211;Clcn1-201;Clcn1-205;Clcn1-204;Clcn1-206;Clcn1-210;Clcn1-208;Clcn1-207;Clcn1-202,Clcn1;Clcn1;Clcn1;Clcn1;Clcn1;Clcn1;Clcn1;Clcn1;Clcn1,12879;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,1,12723,ENSMUSG00000029862,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25211,cg25323457,0.000077,0.0000115,6.701454633,9.74E-11,gain,yes,-0.0000189,0.0000195,-0.968942868,0.333329047,neg,ns,0.049147359,0.005719558,8.592860139,4.23E-16,pos,yes,15.37355599,-0.001113506,0.000196695,-5.661078009,3.43E-08,neg,yes,0.145845291,Arid1a,Arid1a_Intron,4,133729480,133729529,133729480,133729481,50,+,CGGCACTGCTATTTATAACTCATCTCAAATTGAGGGCAGACTGCCTAAAA,"Intron (Arid1a-202/Arid1a, intron 1 of 19)",4,133679008,133753611,74604,2,Arid1a-202,24082,Arid1a-202;Arid1a-205;Arid1a-201;Arid1a-203,Arid1a;Arid1a;Arid1a;Arid1a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,31,93760,ENSMUSG00000007880,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U5,En-Sd
20952,cg04351740,-0.0000366,0.00000646,-5.6610192,3.43E-08,loss,yes,0.0000106,0.000011,0.968900133,0.333350336,pos,ns,0.015831103,0.003216011,4.922589313,0.00000139,pos,ns,5.856899809,-0.001038301,0.000110598,-9.388030653,1.36E-18,neg,yes,0.921549322,Lrrc8d,Lrrc8d_Exon,5,105813177,105813226,105813177,105813178,50,-,CGATGCTGTCTTTGACCTCACAGACCTGGATGTGCTAAAGCTTGAACTAA,"Exon (Lrrc8d-201/Lrrc8d, exon 3 of 3)",5,105699969,105815215,115247,1,Lrrc8d-201,113208,Lrrc8d-201;Lrrc8d-202;Lrrc8d-210;Lrrc8d-203;Lrrc8d-208;Lrrc8d-209;Lrrc8d-206,Lrrc8d;Lrrc8d;Lrrc8d;Lrrc8d;Lrrc8d;Lrrc8d;Lrrc8d,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,3,231549,ENSMUSG00000046079,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9749,cg06906139,-0.00000146,0.00000138,-1.061930971,0.289093603,loss,ns,0.00000227,0.00000234,0.968730497,0.333434853,pos,ns,0.001291591,0.000685103,1.885250449,0.060331094,pos,ns,1.219458802,-0.0000396,0.0000236,-1.679885064,0.093987105,neg,ns,0.070714153,Nkapd1,Nkapd1_fiveUTR,9,50616733,50616782,50616781,50616782,50,+,CCAGGAAGCCAAGGAGTCAGGGCTCAAAGGCAGCTCTGCAGCTTCACCCG,Promoter (<=1kb),9,50605240,50617464,12225,2,Nkapd1-201,682,Nkapd1-201;Nkapd1-205;Nkapd1-202;Nkapd1-204;Nkapd1-203;Pih1d2-201;Pih1d2-202;Pih1d2-206;Pih1d2-204;Pih1d2-207;Pih1d2-205;Pih1d2-203,Nkapd1;Nkapd1;Nkapd1;Nkapd1;Nkapd1;Pih1d2;Pih1d2;Pih1d2;Pih1d2;Pih1d2;Pih1d2;Pih1d2,0;0;0;0;0;-539;-551;-555;-601;-739;-768;-1225,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,3,270156,ENSMUSG00000059820,conserved gene and region,9,50616781,50617609,829,*,829,82,0.670687575,0.879586978,0.098914355,7.50E-62,CpGisland,TRUE,U1,Pr-A
13499,cg22024235,-0.0000135,0.00000646,-2.091162219,0.037327354,loss,ns,-0.0000106,0.000011,-0.968643457,0.333478224,neg,ns,-0.004385057,0.003215588,-1.363687468,0.173655361,neg,ns,0.760311805,-0.0000311,0.000110584,-0.280964859,0.778924783,neg,ns,0.857647703,Gm49430,Gm49430_Intergenic_downstream,15,70918504,70918553,70918504,70918505,50,-,CGTAATGAGGTTGAGATTCGTAAAGTTCGATAATTGTCAGGGGAAGAATA,Distal Intergenic,15,70961618,70962464,847,2,Gm49430-201,43960,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,3,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7106,cg00401433,0.0000158,0.0000137,1.148164936,0.251785704,gain,ns,0.0000226,0.0000233,0.968629802,0.333485029,pos,ns,0.027652806,0.006837747,4.044140169,0.0000663,pos,ns,4.178266739,-0.000558574,0.00023515,-2.375398646,0.018137871,neg,ns,0.313410242,Zfpm2,Zfpm2_Intron,15,40978890,40978939,40978890,40978891,50,+,CGTGGATAAAACCAATTGGCAACCCCCAAAGGAATGGGGGCGATAAGGCG,"Intron (Zfpm2-201/Zfpm2, intron 5 of 7)",15,40655035,41104592,449558,1,Zfpm2-201,323855,Zfpm2-201;Zfpm2-203,Zfpm2;Zfpm2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,41,22762,ENSMUSG00000022306,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22602,cg03668418,-0.000104294,0.00000986,-10.57908011,1.55E-22,loss,yes,0.0000162,0.0000167,0.968393649,0.333602721,pos,ns,0.005067009,0.004906692,1.032673112,0.302561856,pos,ns,0.519185824,-0.00036624,0.000168741,-2.170431686,0.030733015,neg,ns,0.739948093,BC052040,BC052040_Intergenic_upstream,2,115384878,115384927,115384878,115384879,50,-,CGGCTGTTAATGACTTTGATGTTGATGTGGAAAAGTGAATGACTGCATAA,Distal Intergenic,2,115581716,115778768,197053,1,BC052040-203,-196838,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,9,49,399568,ENSMUSG00000040282,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16148,cg01987269,-0.00000254,0.0000053,-0.47956409,0.631875537,loss,ns,0.00000872,0.00000901,0.968160104,0.333719139,pos,ns,-0.003547173,0.0026393,-1.343982504,0.179936823,neg,ns,0.744879951,0.000101082,0.0000908,1.113668071,0.266284356,pos,ns,0.922046743,Bnc2,Bnc2_Intron,4,84529589,84529638,84529637,84529638,50,-,GTCCCTCGCTCCCTCTAATGAGAGCAGATGAATTAGTGCTACGTGACACG,"Intron (Bnc2-201/Bnc2, intron 3 of 7)",4,84275095,84675034,399940,2,Bnc2-201,145396,Bnc2-201;Bnc2-202;Bnc2-214;Bnc2-215;Bnc2-206;Bnc2-211;Bnc2-217;Bnc2-207;Bnc2-212;Bnc2-203;Bnc2-209;Bnc2-221;Bnc2-204;Bnc2-220,Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,91,242509,ENSMUSG00000028487,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14967,cg12648670,-0.000000677,0.00000767,-0.088311434,0.929686173,loss,ns,0.0000126,0.000013,0.968113952,0.333742149,pos,ns,-0.000785951,0.00381698,-0.205909059,0.836997106,neg,ns,0.077276044,-0.000062,0.000131266,-0.472197684,0.637117915,neg,ns,0.785224777,Ptprd,Ptprd_Exon,4,78214003,78214052,78214051,78214052,50,+,ATTCTGCCAACCCGCAGGAAGCTTTTAACAAGATGCAGCTGAGCGTGTCG,Promoter (2-3kb),4,77351290,78211961,860672,2,Ptprd-210,-2042,Ptprd-205;Ptprd-211;Ptprd-209;Ptprd-215;Ptprd-210;Ptprd-207;Ptprd-208,Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,13,32,19266,ENSMUSG00000028399,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27592,cg24483978,-0.00000248,0.00000117,-2.129806746,0.033975006,loss,ns,0.00000192,0.00000198,0.968000617,0.333798657,pos,ns,0.000152446,0.000580089,0.262797974,0.792880864,pos,ns,0.100792064,-0.0000241,0.0000199,-1.209682285,0.227322503,neg,ns,0.967721495,Dok5,Dok5_Exon,2,170832963,170833012,170833011,170833012,50,+,TCTGTCTTTGGGACGTCCAGAATCCCAGAGTCAAACTCATCTCTTGGCCG,"Exon (Dok5-201/Dok5, exon 5 of 8)",2,170731807,170879769,147963,1,Dok5-201,101156,Dok5-201,Dok5,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,76829,ENSMUSG00000027560,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3811,cg10149728,0.0000344,0.00000659,5.225844049,0.000000319,gain,yes,0.0000108,0.0000112,0.967987817,0.333805039,pos,ns,0.009378565,0.003278935,2.860247302,0.004520471,pos,ns,2.344816298,-0.000257962,0.000112762,-2.28766005,0.022830544,neg,ns,0.4615204,Celf4,Celf4_Exon,18,25491171,25491220,25491171,25491172,50,-,CGTCCCCAAACTCCTGGGGCAGATGGTAGATGAACAGGTTACAGCCCTCG,"Exon (Celf4-202/Celf4, exon 11 of 13)",18,25477632,25753983,276352,2,Celf4-202,262763,Celf4-202;Celf4-201;Celf4-203;Celf4-207;Celf4-206;Celf4-208;Celf4-210,Celf4;Celf4;Celf4;Celf4;Celf4;Celf4;Celf4,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,31,59,108013,ENSMUSG00000024268,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27750,cg13753818,-0.0000308,0.0000106,-2.898959288,0.004011206,loss,ns,-0.0000175,0.0000181,-0.967931561,0.333833091,neg,ns,0.013062475,0.005296222,2.466375739,0.014189572,pos,ns,1.848030705,-0.0000389,0.000182137,-0.213648158,0.830961887,neg,ns,0.740102207,Wdr26,Wdr26_Exon,1,181209021,181209070,181209021,181209022,50,-,CGTTTGAGAGATTTCAAGTGCGCCTCTTACCACAATAGCATGAGGAGAAT,"Exon (Wdr26-207/Wdr26, exon 3 of 14)",1,181173228,181211978,38751,2,Wdr26-207,2908,Wdr26-207;Wdr26-209;Wdr26-208;Wdr26-201,Wdr26;Wdr26;Wdr26;Wdr26,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,7,226757,ENSMUSG00000038733,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19068,cg15917885,0.0000157,0.000014,1.120435051,0.263395677,gain,ns,-0.0000231,0.0000239,-0.96782834,0.333884565,neg,ns,-0.006246354,0.006988705,-0.893778556,0.372133734,neg,ns,0.429300959,-0.0000726,0.000240341,-0.302091504,0.762784881,neg,ns,0.199765965,Neurod2,Neurod2_Intergenic_downstream,11,98317635,98317684,98317635,98317636,50,-,CGGCCTCATAAATCAGTTTTTAAGTAGCAACCACATGGACATTTCCCAGC,Distal Intergenic,11,98325415,98329648,4234,2,Neurod2-201,12013,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,22,18013,ENSMUSG00000038255,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
3471,cg26388381,0.00000227,0.00000134,1.695663532,0.090953635,gain,ns,0.0000022,0.00000227,0.967736435,0.3339304,pos,ns,-0.000227386,0.000664966,-0.341951667,0.732618966,neg,ns,0.135121843,0.0000125,0.0000229,0.546384104,0.585194957,pos,ns,0.972427087,Bcl11a,Bcl11a_Exon,11,24163499,24163548,24163499,24163500,50,-,CGCCTGGGGGCGGAAGAGATGGCCCTGGCCACCCATCACCCGAGTGCCTT,"Exon (Bcl11a-201/Bcl11a, exon 4 of 5)",11,24078056,24173194,95139,1,Bcl11a-201,85443,Bcl11a-201;Bcl11a-203;Bcl11a-202;Bcl11a-204;Bcl11a-206,Bcl11a;Bcl11a;Bcl11a;Bcl11a;Bcl11a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,Exon,51,98,14025,ENSMUSG00000000861,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4970,cg23302461,0.0000357,0.0000051,6.999420441,1.60E-11,gain,yes,0.00000839,0.00000867,0.967667472,0.333964796,pos,ns,0.003673716,0.002539937,1.446380544,0.149080801,pos,ns,0.826578283,0.0000218,0.0000873,0.249733008,0.802959233,pos,ns,0.071679461,Foxf2,Foxf2_Promoter,13,31623943,31623992,31623991,31623992,50,+,TCGGACACATTCCCATGTAGGTACCAGGGGTGCTCTGGAGGAAGCTGTCG,Promoter (1-2kb),13,31625816,31631403,5588,1,Foxf2-201,-1824,Foxf2-201,Foxf2,-1824,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,3,3,14238,ENSMUSG00000038402,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
18976,cg12815579,-0.000000334,0.00000979,-0.034113078,0.972808934,loss,ns,-0.0000161,0.0000166,-0.967634451,0.333981267,neg,ns,-0.001246169,0.004871221,-0.255822698,0.798257412,neg,ns,0.09785704,-0.000253176,0.000167521,-1.511308438,0.131728558,neg,ns,0.610221684,Nfia,Nfia_Intron,4,98103028,98103077,98103076,98103077,50,-,ACAAAATGTAATCATTGTTGAAATATTCCCTTTGAACTGCCGTGTCCACG,"Intron (Nfia-202/Nfia, intron 10 of 10)",4,97777608,98118871,341264,1,Nfia-202,325420,Nfia-202;Nfia-203;Nfia-205;Nfia-201;Nfia-204,Nfia;Nfia;Nfia;Nfia;Nfia,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,44,18027,ENSMUSG00000028565,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
5762,cg07811208,0.0000331,0.00000944,3.50422258,0.000525407,gain,ns,0.0000155,0.000016,0.967616873,0.333990034,pos,ns,0.008188662,0.00469827,1.742909877,0.082340901,pos,ns,1.084384385,-0.000259379,0.000161573,-1.605332649,0.109438795,neg,ns,0.173761592,Sox2,Sox2_Intron,3,34661941,34661990,34661941,34661942,50,+,CGCATATTGTTTGATTACTAATTCGAGTTAATATGATCTTTATGGCAACA,"Intron (Sox2ot-203/Sox2ot-203, intron 3 of 3)",3,34650405,34652461,2057,1,Sox2-201,11536,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,34,62,20674,ENSMUSG00000074637,mapped to different genes,3,34661791,34661965,175,*,175,12,0.525714286,0.992438563,0.068571429,0.000000139,CpGisland,TRUE,U13,Hc-P
24711,cg23974202,-0.0000024,0.000000712,-3.371944921,0.000840987,loss,ns,0.00000117,0.00000121,0.967590631,0.334003124,pos,ns,0.000617876,0.000354186,1.74449433,0.082063996,pos,ns,1.08584734,-0.0000201,0.0000122,-1.650284188,0.099897588,neg,ns,0.023974104,Ccnt2,Ccnt2_Exon,1,127774241,127774290,127774289,127774290,50,+,GTGGAGCTTCTTCTCGCTGGTTCTTTACTCGGGAACAGCTGGAGAACACG,Promoter (<=1kb),1,127774164,127793589,19426,1,Ccnt2-203,77,Ccnt2-203;Ccnt2-204;Ccnt2-206;Ccnt2-205;Ccnt2-202;Ccnt2-201,Ccnt2;Ccnt2;Ccnt2;Ccnt2;Ccnt2;Ccnt2,0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,11,72949,ENSMUSG00000026349,conserved gene and region,1,127773875,127774860,986,*,986,93,0.643002028,0.927282104,0.094320487,5.41E-68,CpGisland,TRUE,U1,Pr-A
9199,cg17407296,-0.0000181,0.00000724,-2.500092362,0.012932454,loss,ns,-0.0000119,0.0000123,-0.967512168,0.334042264,neg,ns,-0.008596918,0.003604178,-2.385264603,0.017667369,neg,ns,1.75282811,0.00000942,0.000123947,0.076017711,0.939454042,pos,ns,0.871254034,Cadm1,Cadm1_Intergenic_upstream,9,47506292,47506341,47506340,47506341,50,+,CAGTGTAATGAACCCCCGCTAACACATCATTTTTATTCCACTGCACCTCG,Distal Intergenic,9,47530173,47853385,323213,1,Cadm1-204,-23832,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,18,77,54725,ENSMUSG00000032076,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8012,cg21454590,0.00000693,0.00000246,2.813513541,0.00521333,gain,ns,-0.00000405,0.00000418,-0.967442027,0.334077256,neg,ns,-0.002515588,0.00122544,-2.05280456,0.040930648,neg,ns,1.387951378,0.0000822,0.0000421,1.949668707,0.052116997,pos,ns,0.056762528,Pax2,Pax2_Intergenic_upstream,19,44684035,44684084,44684083,44684084,50,-,AGATTTAAGCAAATGACTGTGTCAGCTTCTATTTACTCCTGACAGGATCG,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-72010,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,19,44684083,44684169,87,*,87,12,0.643678161,1.338461539,0.137931035,3.16E-11,CpGisland,TRUE,U13,Hc-P
12926,cg08600163,-0.00000533,0.00000175,-3.054006834,0.002453934,loss,ns,0.00000287,0.00000296,0.967392386,0.334102022,pos,ns,-0.000879779,0.000868565,-1.012911112,0.311892539,neg,ns,0.505995014,0.00000737,0.0000299,0.246899814,0.805149184,pos,ns,0.043909685,Arid5b,Arid5b_Promoter,10,68279712,68279761,68279760,68279761,50,-,TCAAATGATAATGTGTTTATATAACCCAGCGCTACAGGAATAATATACCG,Promoter (1-2kb),10,68092520,68278740,186221,2,Arid5b-204,-1021,Arid5b-204;Arid5b-201;Arid5b-202,Arid5b;Arid5b;Arid5b,0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,16,33,71371,ENSMUSG00000019947,conserved gene and region,10,68279593,68279827,235,*,235,14,0.50212766,0.955007257,0.059574468,5.38E-08,CpGisland,TRUE,U1,Pr-A
11228,cg02384124,0.0000209,0.0000101,2.076187728,0.038700409,gain,ns,0.0000165,0.0000171,0.967284565,0.334155818,pos,ns,0.004208328,0.005005214,0.840788813,0.401114301,pos,ns,0.396731853,0.00000504,0.000172129,0.029255314,0.976679791,pos,ns,0.72209637,Satb2,Satb2_Intergenic_upstream,1,57083320,57083369,57083320,57083321,50,-,CGTGATTCACAGATATGATTGCATCTAATTTCAGAAATAAGTGGAACCGT,Distal Intergenic,1,56969740,56978650,8911,2,Satb2-204,-104719,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,33,212712,ENSMUSG00000038331,mapped to different genes,1,57083151,57083321,171,*,171,10,0.532163743,0.855855856,0.058479532,0.00000878,CpGisland,TRUE,U15,NS
23891,cg11657685,0.000000402,0.00000224,0.179825648,0.857406934,gain,ns,0.00000367,0.0000038,0.967250693,0.334172719,pos,ns,0.001780068,0.001112582,1.599943245,0.110629779,pos,ns,0.956127954,-0.0000604,0.0000383,-1.578879591,0.115383492,neg,ns,0.954082882,Ctnnb1,Ctnnb1_fiveUTR,9,120930124,120930173,120930172,120930173,50,+,TGCAGTCCCAGAATCCTCCGGTAAGTTAATCCTTCTTGCGATGGGAAACG,Promoter (<=1kb),9,120929216,120950635,21420,1,Ctnnb1-203,908,Ctnnb1-203;Ctnnb1-201;Ctnnb1-208;Ctnnb1-209;Ctnnb1-214;Ctnnb1-204;Ctnnb1-207,Ctnnb1;Ctnnb1;Ctnnb1;Ctnnb1;Ctnnb1;Ctnnb1;Ctnnb1,0;0;0;0;0;0;-3645,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,9,12387,ENSMUSG00000006932,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
519,cg08159003,-0.0000363,0.00000796,-4.556392695,0.00000749,loss,ns,-0.0000131,0.0000135,-0.967009613,0.334293027,neg,ns,-0.008813278,0.003961482,-2.224742763,0.02681814,neg,ns,1.571571348,0.000119582,0.000136235,0.877766164,0.380750401,pos,ns,0.752670199,St18,St18_Intron,1,6752402,6752451,6752402,6752403,50,-,CGGGCTGTTCCTTTCTGTAGGATCTGATTAGAAATTAGTGTTAAACCACT,"Intron (St18-208/St18, intron 3 of 23)",1,6487231,6860934,373704,1,St18-208,265171,St18-208;St18-204;St18-201;St18-206;St18-203;St18-210;St18-212;St18-207;St18-213,St18;St18;St18;St18;St18;St18;St18;St18;St18,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,20,240690,ENSMUSG00000033740,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18594,cg05992357,0.0000651,0.0000101,6.457222664,4.11E-10,gain,yes,-0.0000166,0.0000171,-0.966895901,0.334349784,neg,ns,-0.001333009,0.005019282,-0.265577674,0.790741008,neg,ns,0.101965738,0.0001621,0.000172613,0.939094343,0.348413425,pos,ns,0.098762368,Hoxb5,Hoxb5_Exon,11,96303676,96303725,96303724,96303725,50,-,GCTAAATTATGGCAGTGGCAGCTCTCTGAGCGGCTCTTACAGGGATCCCG,Promoter (<=1kb),11,96303336,96306121,2786,1,Hoxb5-202,340,Hoxb5-202;Hoxb5-201;Hoxb6-202;Hoxb6-201,Hoxb5;Hoxb5;Hoxb6;Hoxb6,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,22,34,15413,ENSMUSG00000038700,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
18320,cg18288070,0.000000714,0.00000147,0.484410948,0.628436315,gain,ns,0.00000242,0.00000251,0.966743361,0.33442593,pos,ns,0.001804718,0.000733882,2.459139164,0.014473104,pos,ns,1.839438308,-0.0000591,0.0000252,-2.343581587,0.019731153,neg,ns,0.052088524,Gm48316,Gm48316_Intergenic_upstream,13,94710220,94710269,94710268,94710269,50,-,AACTCTCTTTTATTTCCAACAGCCCTAATCAGCCGCTCTCATTACAAACG,Distal Intergenic,13,94752270,94752593,324,1,Gm48316-201,-42050,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,36,42,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
6059,cg23973122,0.0000154,0.00000249,6.194747743,1.85E-09,gain,yes,-0.00000408,0.00000422,-0.96673703,0.334429091,neg,ns,0.00136628,0.001237457,1.104102915,0.270404769,pos,ns,0.567985654,0.0000192,0.0000426,0.450162026,0.652908254,pos,ns,0.039989207,Psd2,Psd2_Intergenic_upstream,18,35920349,35920398,35920349,35920350,50,-,CGACCCTGAATTTTAAGCGATTGATCAGGAAGCTCAGGCCGTTCCCATCA,Distal Intergenic,18,35964830,36014712,49883,1,Psd2-201,-44481,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,24,29,74002,ENSMUSG00000024347,mapped to different genes,18,35920297,35920581,285,*,285,27,0.628070175,0.962115529,0.094736842,3.34E-20,CpGisland,TRUE,U3,Pr-B
16987,cg14504458,-0.000039,0.00000925,-4.215845875,0.0000327,loss,ns,0.0000152,0.0000157,0.966636855,0.334479103,pos,ns,0.000796056,0.00460588,0.17283479,0.862894079,pos,ns,0.064042511,0.0000918,0.000158396,0.57967882,0.562552265,pos,ns,0.844893678,Zfp423,Zfp423_Intron,8,87749957,87750006,87750005,87750006,50,+,AAACTGCTTTCCATGTAATTATTCTTGCTATTTTACATTAGCGCTCAACG,"Intron (Zfp423-203/Zfp423, intron 3 of 5)",8,87661810,87804439,142630,2,Zfp423-203,54433,Zfp423-203;Zfp423-202;Zfp423-201,Zfp423;Zfp423;Zfp423,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,42,53,94187,ENSMUSG00000045333,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12862,cg25269677,-0.00000457,0.00000175,-2.608790147,0.009526686,loss,ns,0.00000288,0.00000298,0.966569001,0.334512983,pos,ns,0.001816867,0.00087193,2.083731075,0.03800344,pos,ns,1.420177096,-0.000084,0.00003,-2.801407258,0.005407885,neg,ns,0.949673014,Bend4,Bend4_Intron,5,67424063,67424112,67424063,67424064,50,-,CGGTATATAAAATAGGATGCTGCTATTTGTGATGGCAAACAAAAGCAATC,"Intron (Bend4-201/Bend4, intron 1 of 4)",5,67392147,67427799,35653,2,Bend4-201,3687,Bend4-201;Bend4-203;Bend4-202;Bend4-205;Bend4-204,Bend4;Bend4;Bend4;Bend4;Bend4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,7,666938,ENSMUSG00000092060,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
382,cg06612228,0.00000165,0.00000298,0.551803879,0.581480283,gain,ns,-0.0000049,0.00000507,-0.9663437,0.33462549,neg,ns,0.000590741,0.001485565,0.397654028,0.691158909,pos,ns,0.16042209,-0.0000295,0.0000511,-0.576944279,0.564395817,neg,ns,0.960560972,Zfhx4,Zfhx4_Exon,3,5329848,5329897,5329848,5329849,50,-,CGGTCCTGCATGCGGTGACATCTTTAGCAGGCATGCAGGAGGTTATGAAA,"Exon (Zfhx4-202/Zfhx4, exon 2 of 2)",3,5218526,5413165,194640,1,Zfhx4-203,111322,Zfhx4-203;Zfhx4-202;Zfhx4-201;Zfhx4-205,Zfhx4;Zfhx4;Zfhx4;Zfhx4,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,23,77,80892,ENSMUSG00000025255,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17684,cg05379675,0.0000134,0.00000236,5.684176403,3.03E-08,gain,yes,-0.00000387,0.000004,-0.96630866,0.33464299,neg,ns,-0.000321025,0.00117279,-0.273727357,0.784476441,neg,ns,0.105420095,0.0000493,0.0000403,1.22341556,0.222101908,pos,ns,0.053833708,Elavl2,Elavl2_fiveUTR,4,91376366,91376415,91376366,91376367,50,+,CGTCTTAAAAGGGAGGTGGACTGGACCACAGATTTATAGCACCGTATCAC,Promoter (<=1kb),4,91250763,91376463,125701,2,Elavl2-208,48,Elavl2-204;Elavl2-201;Elavl2-207;Elavl2-208;Elavl2-202;Elavl2-209;Elavl2-203;Elavl2-205;Elavl2-215;Elavl2-212;Elavl2-214;Elavl2-211,Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,8,31,15569,ENSMUSG00000008489,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
25440,cg03957712,-0.0000143,0.0000181,-0.787213102,0.431758563,loss,ns,-0.0000297,0.0000308,-0.966057364,0.334768511,neg,ns,-0.0147184,0.00901918,-1.631900001,0.103715928,neg,ns,0.984154542,0.000496592,0.000310169,1.601037181,0.110387206,pos,ns,0.884222473,Atf7ip,Atf7ip_Exon,6,136603295,136603344,136603295,136603296,50,+,CGTGAATGTAACACATCGTCCAGTAACTCAGGTGACCACAAGACTCCCTG,"Exon (Atf7ip-201/Atf7ip, exon 13 of 15)",6,136518802,136610862,92061,1,Atf7ip-201,84493,Atf7ip-201;Atf7ip-202,Atf7ip;Atf7ip,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,54343,ENSMUSG00000030213,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22758,cg21692288,-0.0000324,0.00000671,-4.832802207,0.00000212,loss,ns,0.000011,0.0000114,0.966023344,0.334785506,pos,ns,-0.00659831,0.003341105,-1.974888786,0.049167794,neg,ns,1.308319277,-0.0000747,0.0001149,-0.650062313,0.516133405,neg,ns,0.828288632,Meis2,Meis2_Intron,2,115920667,115920716,115920715,115920716,50,+,ATCACAGAACCACAAAATCAATTGACCCTCGGGTAGCTCATCAGGCAGCG,"Intron (Meis2-201/Meis2, intron 9 of 11)",2,115863064,116065047,201984,2,Meis2-201,144331,Meis2-201;Meis2-203;Meis2-205;Meis2-206;Meis2-204;Meis2-202;Meis2-216;Meis2-217,Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,45,97,17536,ENSMUSG00000027210,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27287,cg23825683,-4.72E-08,0.00000613,-0.007700128,0.9938612,loss,ns,0.0000101,0.0000104,0.965961092,0.334816607,pos,ns,-0.00334049,0.003052452,-1.094362754,0.274645491,neg,ns,0.561227527,0.0000924,0.000104974,0.880012234,0.379534364,pos,ns,0.894014203,Prrx1,Prrx1_Exon,1,163257911,163257960,163257911,163257912,50,-,CGGAACTTGGCTCTTCGGTTCTGAAACCACACCTGGAGGATTGTTAGGAG,"Exon (Prrx1-202/Prrx1, exon 3 of 5)",1,163245119,163313672,68554,2,Prrx1-202,55712,Prrx1-202;Prrx1-201;Prrx1-205;Prrx1-204,Prrx1;Prrx1;Prrx1;Prrx1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,11,18933,ENSMUSG00000026586,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13829,cg04914580,-0.00000745,0.00000156,-4.778944491,0.00000273,loss,ns,0.00000256,0.00000265,0.965925382,0.334834448,pos,ns,0.000885242,0.00077595,1.140848262,0.254813644,pos,ns,0.593777321,-0.0000493,0.0000267,-1.848882289,0.065426803,neg,ns,0.957371754,Slitrk3,Slitrk3_Exon,3,73049909,73049958,73049957,73049958,50,+,AGCAGCTTCAAGTTGGGCATGAGGCTGAAGGCTGCAGGCTGGATTTCCCG,"Exon (Slitrk3-202/Slitrk3, exon 2 of 2)",3,73047265,73056943,9679,2,Slitrk3-202,6985,Slitrk3-202;Slitrk3-201,Slitrk3;Slitrk3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,386750,ENSMUSG00000048304,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25569,cg21392555,0.00000608,0.00000849,0.71669529,0.474101731,gain,ns,-0.0000139,0.0000144,-0.965880254,0.334856996,neg,ns,-0.01080733,0.004223511,-2.558849914,0.010976623,neg,ns,1.95953124,0.000104288,0.000145246,0.718007455,0.473293439,pos,ns,0.825687991,Ebf3,Ebf3_Intron,7,137244952,137245001,137244952,137244953,50,+,CGTGTTTCTGATTCATCTAGGGCCGCATGGCAAAGCTTTGTCAGTCTGTG,"Intron (Ebf3-204/Ebf3, intron 6 of 15)",7,137193673,137314445,120773,2,Ebf3-204,69444,Ebf3-204;Ebf3-201;Ebf3-202;Ebf3-203;Ebf3-208;Ebf3-205,Ebf3;Ebf3;Ebf3;Ebf3;Ebf3;Ebf3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,62,84,13593,ENSMUSG00000010476,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24599,cg05969580,-0.000029,0.00000798,-3.640113088,0.000319201,loss,ns,-0.0000131,0.0000136,-0.965872789,0.334860726,neg,ns,-0.002444658,0.003969969,-0.615787613,0.53848655,neg,ns,0.26882514,0.000157045,0.000136527,1.15028493,0.250913094,pos,ns,0.907621886,Itpripl1,Itpripl1_Exon,2,127142130,127142179,127142130,127142131,50,-,CGATCACTGACCATCAGAGGGTGGTGAACAACATACATCACTGCCAAGAA,"Exon (Itpripl1-202/Itpripl1, exon 2 of 3)",2,127138772,127143442,4671,2,Itpripl1-202,1263,Itpripl1-202;Itpripl1-201;Itpripl1-203,Itpripl1;Itpripl1;Itpripl1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,73338,ENSMUSG00000074825,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U4,Pr-F
24200,cg24548567,0.00000112,0.00000151,0.741724347,0.458815922,gain,ns,0.00000247,0.00000256,0.965834997,0.334879608,pos,ns,-0.000315102,0.00075034,-0.419946357,0.674815547,neg,ns,0.17081492,0.0000185,0.0000258,0.717172427,0.473807726,pos,ns,0.95997272,Arhgap17,Arhgap17_Exon,7,123314432,123314481,123314432,123314433,50,+,CGGGGAGGGTCTTTTCTAAGACTGCTAATGCTTTTCTATGGTAATCTGCT,"Exon (Arhgap17-211/Arhgap17, exon 9 of 20)",7,123279218,123369851,90634,2,Arhgap17-211,55370,Arhgap17-211;Arhgap17-201;Arhgap17-202;Arhgap17-203;Arhgap17-208;Arhgap17-204;Arhgap17-209,Arhgap17;Arhgap17;Arhgap17;Arhgap17;Arhgap17;Arhgap17;Arhgap17,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,70497,ENSMUSG00000030766,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20920,cg25764105,0.0000585,0.00000789,7.413959718,1.18E-12,gain,yes,-0.0000129,0.0000134,-0.965799992,0.334897099,neg,ns,0.008652051,0.003927856,2.20274147,0.028348614,pos,ns,1.547468175,0.0000213,0.000135079,0.157585583,0.874885957,pos,ns,0.116606222,Pax6,Pax6_Intron,2,105690127,105690176,105690127,105690128,50,+,CGCTCCTGCCCCAGGAGTTTAATAGTTTCCCTTACTCGCGGGGCATTGTG,"Intron (Pax6-206/Pax6, intron 7 of 12)",2,105668900,105697364,28465,1,Pax6-206,21227,Pax6-206;Pax6-207;Pax6-210;Pax6-208;Pax6-202;Pax6-205;Pax6-225;Pax6-204;Pax6-201;Pax6-203;Pax6-224;Pax6-219;Pax6-213;Pax6-211;Pax6-222;Pax6-212;Pax6-215;Pax6-223;Pax6-216;Pax6-218,Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;-2307,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,78,18508,ENSMUSG00000027168,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
3143,cg23931730,0.0000333,0.00000596,5.593325089,0.000000049,gain,yes,-0.00000978,0.0000101,-0.965756385,0.33491889,neg,ns,0.002688612,0.002966152,0.90643078,0.365411886,pos,ns,0.43721733,-0.000127704,0.000102006,-1.25193428,0.211537579,neg,ns,0.088930894,Ank1,Ank1_fiveUTR,8,22975132,22975181,22975132,22975133,50,-,CGCCATGGCTCAAGCGGCCAAACAGCTGAAGAAAATCAAAGACATCGAGG,Promoter (<=1kb),8,22975136,23148307,173172,1,Ank1-204,0,Ank1-203;Ank1-209;Ank1-204,Ank1;Ank1;Ank1,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,2,11733,ENSMUSG00000031543,conserved gene and region,8,22974402,22975183,782,*,782,125,0.805626599,0.989532718,0.159846547,3.27E-124,CpGisland,TRUE,U3,Pr-B
9507,cg08519289,0.0000163,0.00000745,2.189236282,0.02932506,gain,ns,-0.0000122,0.0000127,-0.965508083,0.335042981,neg,ns,-0.000533928,0.003709345,-0.143941221,0.885640411,neg,ns,0.052742575,-0.000148851,0.000127564,-1.166870152,0.244159628,neg,ns,0.169224533,Exoc5,Exoc5_Intergenic_downstream,14,48990848,48990897,48990896,48990897,50,+,AAGCAAGCGCCTCCTTTTAACTTCTGCCTACTGCGCATTTTGGATTATCG,Distal Intergenic,14,49015471,49019792,4322,2,Exoc5-205,28895,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,4,105504,ENSMUSG00000061244,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
817,cg27210768,-0.0000104,0.00000397,-2.612289684,0.009431829,loss,ns,0.00000651,0.00000675,0.965458442,0.335067794,pos,ns,-0.000360381,0.001976426,-0.182339491,0.855435489,neg,ns,0.067812736,0.000081,0.000068,1.192348592,0.234036488,pos,ns,0.913951221,1810013L24Rik,1810013L24Rik_Exon,16,8843024,8843073,8843024,8843025,50,+,CGACGCAATAAGGATGTGTTGGCTTGGGTTAAAAAACGCAGAAGAACTAT,"Exon (1810013L24Rik-201/1810013L24Rik, exon 3 of 4)",16,8830100,8858922,28823,1,1810013L24Rik-201,12924,1810013L24Rik-201;1810013L24Rik-202,1810013L24Rik;1810013L24Rik,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,18,19,69053,ENSMUSG00000022507,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26506,cg20091192,0.0000168,0.0000228,0.738574821,0.460724011,gain,ns,-0.0000374,0.0000387,-0.965408454,0.33509278,neg,ns,0.031186604,0.01134232,2.749579006,0.006317425,pos,ns,2.199459912,-0.000677056,0.000390061,-1.735766367,0.083598796,neg,ns,0.417818863,Casz1,Casz1_Intron,4,148845093,148845142,148845093,148845094,50,-,CGATCCGCTTTAGCTAATTAATAATCTGACAGGAGCCACCCAGGGGATTA,"Intron (Casz1-201/Casz1, intron 2 of 15)",4,148804429,148945129,140701,1,Casz1-201,40664,Casz1-201;Casz1-202,Casz1;Casz1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,94,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13509,cg20738648,-0.00000958,0.0000049,-1.957072686,0.051236151,loss,ns,-0.00000803,0.00000832,-0.965346164,0.335123918,neg,ns,-0.000406741,0.002437092,-0.166896132,0.867560586,neg,ns,0.061700186,-0.000200288,0.0000838,-2.389744385,0.017457303,neg,ns,0.900715492,Derl2,Derl2_threeUTR,11,71014557,71014606,71014605,71014606,50,-,AAGAATCCACCAAAAAGGAACATAAATACAAAGTCTGCTGTCCGACCTCG,3' UTR,11,71007164,71019242,12079,2,Derl2-202,4636,Derl2-202;Derl2-206;Derl2-207;Derl2-201;Derl2-205;Derl2-204;Derl2-203,Derl2;Derl2;Derl2;Derl2;Derl2;Derl2;Derl2,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,2,116891,ENSMUSG00000018442,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
922,cg13170453,0.0000077,0.00000417,1.846209415,0.065814976,gain,ns,-0.00000684,0.00000709,-0.965318854,0.335137571,neg,ns,0.000794322,0.002076934,0.382449296,0.702390202,pos,ns,0.153421555,-0.000110947,0.0000714,-1.553318042,0.121367458,neg,ns,0.051210426,Gdf6,Gdf6_Exon,4,9859336,9859385,9859336,9859337,50,+,CGATCTCTCGCACACTCCTCTCCGGAGACAGAAGTATTTGTTTGATGTGT,"Exon (Gdf6-201/Gdf6, exon 2 of 2)",4,9844372,9862345,17974,1,Gdf6-201,14964,Gdf6-201,Gdf6,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,11,242316,ENSMUSG00000051279,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
6274,cg06503690,-0.0000111,0.00000957,-1.154468077,0.249197497,loss,ns,0.0000157,0.0000163,0.965313175,0.33514041,pos,ns,-0.003684262,0.00476554,-0.773104822,0.440049429,neg,ns,0.356498538,0.0000178,0.000163887,0.108837945,0.913401441,pos,ns,0.668926257,Tshz3,Tshz3_Intron,7,36710532,36710581,36710580,36710581,50,-,GACATGATTTATTGCAGCCATCCATCTTGGGGGCTCATCCATCACACCCG,"Intron (Tshz3-201/Tshz3, intron 1 of 1)",7,36698118,36773553,75436,1,Tshz3-201,12414,Tshz3-201,Tshz3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,58,243931,ENSMUSG00000021217,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9998,cg05941858,0.00000297,0.00000264,1.125010789,0.26145475,gain,ns,-0.00000433,0.00000448,-0.964832849,0.335380589,neg,ns,-0.000444379,0.001313815,-0.338235712,0.735414518,neg,ns,0.133467801,-0.000029,0.0000452,-0.642334696,0.521130628,neg,ns,0.934886108,Maml3,Maml3_Intron,3,51805757,51805806,51805805,51805806,50,-,ACATCCTGGCCCGTCTGTGAAATGACAGCCACTTATTCTCCAGTGAACCG,"Intron (Maml3-202/Maml3, intron 2 of 4)",3,51685907,52105076,419170,2,Maml3-202,299270,Maml3-202,Maml3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,32,433586,ENSMUSG00000061143,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8996,cg13376929,-0.00000224,0.00000119,-1.890166261,0.05966838,loss,ns,0.00000194,0.00000201,0.964812556,0.335390738,pos,ns,0.000510647,0.000590282,0.865089855,0.38765842,pos,ns,0.411550778,0.00000551,0.0000203,0.271253396,0.786376684,pos,ns,0.033210489,Trim8,Trim8_Exon,19,46502652,46502701,46502700,46502701,50,+,AGCTCACCAACATCGTGGAGAAGTTCAATGCCCTGCACGTGGAGAAGCCG,Promoter (<=1kb),19,46501702,46516848,15147,1,Trim8-201,950,Trim8-201,Trim8,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,15,21,93679,ENSMUSG00000025034,conserved gene and region,19,46502503,46503142,640,*,640,53,0.6359375,0.821705426,0.0828125,6.38E-36,CpGisland,TRUE,U1,Pr-A
8121,cg26872449,0.00000567,0.00000197,2.882916111,0.004215547,gain,ns,0.00000322,0.00000334,0.964658105,0.335467994,pos,ns,0.002359562,0.000978767,2.410749497,0.016501407,pos,ns,1.782479017,-0.0000603,0.0000337,-1.79259625,0.074012412,neg,ns,0.079365063,Pax2,Pax2_fiveUTR,19,44756584,44756633,44756632,44756633,50,+,ACAGAGTGGTGGAATCTATTGCCTTTGTCTGACAAGTCATCCATCTCCCG,Promoter (<=1kb),19,44756045,44837851,81807,1,Pax2-203,539,Pax2-203;Pax2-201;Pax2-202,Pax2;Pax2;Pax2,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,166,18504,ENSMUSG00000004231,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
27465,cg19567355,-0.00000719,0.00000327,-2.200318624,0.028521689,loss,ns,-0.00000535,0.00000555,-0.964486318,0.335553934,neg,ns,-0.002616513,0.00162652,-1.608656832,0.10870929,neg,ns,0.963733341,0.0000845,0.0000559,1.510588772,0.131911876,pos,ns,0.912900691,Pbx1,Pbx1_Intron,1,168300419,168300468,168300467,168300468,50,-,CAACTCCGGGCTTCCAGAGCAGCAACTGAGGAAAATAAATAACATCAACG,"Intron (Pbx1-208/Pbx1, intron 2 of 7)",1,168119364,168432270,312907,2,Pbx1-208,131802,Pbx1-208;Pbx1-205;Pbx1-206;Pbx1-201;Pbx1-202;Pbx1-204,Pbx1;Pbx1;Pbx1;Pbx1;Pbx1;Pbx1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,84,18514,ENSMUSG00000052534,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3951,cg04906754,-0.0000199,0.0000133,-1.490773858,0.137037676,loss,ns,0.0000218,0.0000226,0.964445112,0.335574551,pos,ns,0.003273103,0.006634684,0.493332191,0.622127184,pos,ns,0.206120821,-0.000254961,0.000228166,-1.117435897,0.26467326,neg,ns,0.848942209,5730522E02Rik,5730522E02Rik_Intron,11,25902108,25902157,25902156,25902157,50,+,TTGTATAGTCCTTATGCAATCAGCCATGCTGGGCATGATGGCCCAAGACG,"Intron (5730522E02Rik-202/5730522E02Rik, intron 2 of 5)",11,25617668,26210569,592902,2,5730522E02Rik-202,308412,5730522E02Rik-202;5730522E02Rik-201;5730522E02Rik-204,5730522E02Rik;5730522E02Rik;5730522E02Rik,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,90,70626,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2687,cg24947078,0.00000781,0.00000169,4.621056865,0.00000561,gain,ns,-0.00000277,0.00000287,-0.964424502,0.335584863,neg,ns,-0.000401499,0.000840812,-0.477513258,0.63333318,neg,ns,0.198367759,0.0000293,0.0000289,1.014227261,0.311265254,pos,ns,0.957349474,Ilf3,Ilf3_Exon,9,21393666,21393715,21393714,21393715,50,-,CCTTGGTCAAACTGTGCCTTGTCTTCTTATTCCATCCATGAATAGAAACG,"Exon (Ilf3-201/Ilf3, exon 6 of 20)",9,21367871,21405360,37490,1,Ilf3-201,25795,Ilf3-201;Ilf3-203;Ilf3-206;Ilf3-213;Ilf3-210;Ilf3-202;Ilf3-207;Ilf3-204;Ilf3-208;Ilf3-209;Ilf3-216;Ilf3-211,Ilf3;Ilf3;Ilf3;Ilf3;Ilf3;Ilf3;Ilf3;Ilf3;Ilf3;Ilf3;Ilf3;Ilf3,0;0;0;0;25663;0;25134;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,11,16201,ENSMUSG00000032178,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4441,cg01799642,-0.00000157,0.00000647,-0.243206653,0.808006164,loss,ns,0.0000106,0.000011,0.964423017,0.335585606,pos,ns,0.003934676,0.00322163,1.221330856,0.222888788,pos,ns,0.651911777,-0.000242875,0.000110792,-2.192183213,0.029109547,neg,ns,0.885167697,Unc5d,Unc5d_Intron,8,28920992,28921041,28920992,28920993,50,+,CGACAGGTGGAAAATTGTTCTGCCAGCTGAAGAAGACAAAATCCATTCCT,"Intron (Unc5d-201/Unc5d, intron 1 of 17)",8,28646717,29219636,572920,2,Unc5d-201,298595,Unc5d-201;Unc5d-204;Unc5d-202;Unc5d-203;Unc5d-205,Unc5d;Unc5d;Unc5d;Unc5d;Unc5d,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,11,210801,ENSMUSG00000063626,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U14,Hc-H
857,cg22823874,0.00000575,0.00000328,1.751158979,0.080907554,gain,ns,0.00000538,0.00000558,0.964216608,0.335688892,pos,ns,0.000844182,0.001633514,0.516789211,0.605671796,pos,ns,0.217762649,-0.000028,0.0000562,-0.498946276,0.6181711,neg,ns,0.937133979,Dmtf1,Dmtf1_Exon,5,9132471,9132520,9132519,9132520,50,+,CTGTCATCATACATGCGAAGCACTCTTCTATAAACTGCAAACAAAGGCCG,"Exon (Dmtf1-201/Dmtf1, exon 8 of 18)",5,9118801,9161776,42976,2,Dmtf1-201,29256,Dmtf1-201;Dmtf1-209;Dmtf1-202;Dmtf1-208;Dmtf1-214;Dmtf1-212;Dmtf1-213;Dmtf1-204;Dmtf1-207;Dmtf1-215;Dmtf1-216;Dmtf1-211;Dmtf1-205;Tmem243-202,Dmtf1;Dmtf1;Dmtf1;Dmtf1;Dmtf1;Dmtf1;Dmtf1;Dmtf1;Dmtf1;Dmtf1;Dmtf1;Dmtf1;Dmtf1;Tmem243,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,11,23857,ENSMUSG00000042508,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8039,cg02285385,-0.0000395,0.0000123,-3.201053277,0.001511262,loss,ns,0.0000202,0.0000209,0.964066251,0.335764143,pos,ns,-0.009905672,0.006134891,-1.614645124,0.107404894,neg,ns,0.968975929,0.000532469,0.000210978,2.523807837,0.012108542,pos,ns,0.792901388,Pax2,Pax2_Intergenic_upstream,19,44699163,44699212,44699163,44699164,50,-,CGCTGGTGACTCGGGGAGCCGCAAACTTCAATTTAAATTTACAGTGCTGC,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-56882,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
8020,cg18397269,-0.000000871,0.00000149,-0.585101312,0.558905233,loss,ns,0.00000244,0.00000253,0.9640064,0.3357941,pos,ns,-0.000617409,0.000740973,-0.833240229,0.405350775,neg,ns,0.392168992,0.0000295,0.0000255,1.15773893,0.247861803,pos,ns,0.969527722,Pax5,Pax5_Intron,4,44695512,44695561,44695560,44695561,50,+,ATGAAATTCCAATTTATTGTTGACAACTTAAACGGTCAGGCACCGGAGCG,"Intron (Pax5-201/Pax5, intron 2 of 9)",4,44524757,44710487,185731,2,Pax5-201,14926,Pax5-201;Pax5-202;Pax5-203;Pax5-204;Pax5-205;Pax5-207;Pax5-206;Pax5-209;Pax5-210;Pax5-212;Pax5-213;Pax5-214;Pax5-215;Pax5-208;Pax5-216;Pax5-217;Pax5-218;Pax5-219,Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,19,45,18507,ENSMUSG00000014030,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8350,cg08187814,0.000023,0.00000799,2.881694458,0.00423149,gain,ns,0.0000131,0.0000136,0.96381903,0.335887896,pos,ns,0.008864499,0.003975678,2.229682222,0.026484562,pos,ns,1.577007207,-0.000338335,0.000136723,-2.474597281,0.013873433,neg,ns,0.572008324,Zeb2,Zeb2_Intron,2,45037727,45037776,45037727,45037728,50,-,CGGGGATTTAAAGATGTCAGGGGGACCTGGCCTCTCAGATGGGATAAAGA,"Intron (Zeb2-212/Zeb2, intron 3 of 10)",2,44983632,45117395,133764,2,Zeb2-212,79619,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-218;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20782,cg16013886,-0.0000211,0.00000684,-3.076298539,0.002282738,loss,ns,0.0000112,0.0000116,0.963746424,0.335924247,pos,ns,0.00041735,0.003406485,0.122516409,0.902569438,pos,ns,0.044519376,-0.000259707,0.000117149,-2.216897637,0.027355441,neg,ns,0.722622635,Olfr686,Olfr686_Exon,7,105203971,105204020,105203971,105203972,50,+,CGGTCCAGGGCCATGGCCACTAGCACCCCTGACTCCATGGCAGAGAATGC,"Exon (Olfr686-204/Olfr686, exon 2 of 2)",7,105201858,105205155,3298,2,Olfr686-204,1135,Olfr686-204;Olfr686-202;Olfr686-203;Olfr686-201,Olfr686;Olfr686;Olfr686;Olfr686,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,259072,ENSMUSG00000048425,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13559,cg15866851,0.000000419,0.00000251,0.167045863,0.867442872,gain,ns,-0.0000041,0.00000426,-0.963695678,0.335949655,neg,ns,-0.001144699,0.001247047,-0.917927927,0.359370208,neg,ns,0.444457929,0.0000639,0.0000429,1.490376868,0.137141926,pos,ns,0.932073055,Gm10172,Gm10172_Intron,7,71324903,71324952,71324951,71324952,50,-,ACCTTATTACAAAGTCTTAATCTTACTGGCCTCAGCACCTTTTATCACCG,"Intron (Gm29328-206/Gm29328-206, intron 1 of 3)",7,71332363,71332921,559,2,Gm10172-201,8018,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,31,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5848,cg22991305,-0.00000515,0.00000275,-1.875051562,0.061725599,loss,ns,0.0000045,0.00000466,0.963632254,0.335981412,pos,ns,0.000177797,0.001366655,0.130096273,0.896574635,pos,ns,0.047413552,-0.0000892,0.000047,-1.898569616,0.058549557,neg,ns,0.930466124,Sox2,Sox2_Intergenic_downstream,3,35005208,35005257,35005256,35005257,50,-,GATCCTTTTGAGCAAATGGTTTGCCCAAAGTTCAGATGGTGCTAGCTCCG,Distal Intergenic,3,34650405,34652461,2057,1,Sox2-201,354852,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,62,20674,ENSMUSG00000074637,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6366,cg24284745,-0.0000121,0.00000548,-2.209731802,0.027854348,loss,ns,0.00000896,0.0000093,0.963590146,0.336002497,pos,ns,0.002872238,0.002725277,1.053925277,0.292737871,pos,ns,0.53352109,-0.0000419,0.0000937,-0.446872695,0.655279014,neg,ns,0.888994792,Cpeb3,Cpeb3_threeUTR,19,37021589,37021638,37021637,37021638,50,-,CAGAAACAACTCTATTAATGATTGAGAAAGCACTCCTTAAAGAAAATACG,3' UTR,19,37021291,37207462,186172,2,Cpeb3-201,185824,Cpeb3-201;Cpeb3-203;Cpeb3-212;Cpeb3-210;Cpeb3-204;Cpeb3-208;Cpeb3-202,Cpeb3;Cpeb3;Cpeb3;Cpeb3;Cpeb3;Cpeb3;Cpeb3,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,9,208922,ENSMUSG00000039652,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1443,cg18845058,-0.0000289,0.0000207,-1.400568987,0.16234313,loss,ns,0.0000338,0.0000351,0.963583535,0.336005807,pos,ns,0.030330885,0.010283821,2.94937891,0.003426437,pos,ns,2.465157292,-0.001471845,0.00035366,-4.161755164,0.000041,neg,ns,0.674573445,Gm49100,Gm49100_Intergenic_downstream,15,12965441,12965490,12965489,12965490,50,-,CACCAGGTCACTTGTTATCCATTTTAGCTGACTGAACAGTTTAAATCACG,Distal Intergenic,15,12955722,12960267,4546,1,Gm49100-201,9768,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3597,cg12211468,-0.0000883,0.0000109,-8.064575945,1.62E-14,loss,yes,0.0000179,0.0000186,0.963460972,0.336067184,pos,ns,-0.020191603,0.005449155,-3.705455817,0.000249827,neg,ns,3.602361189,0.000425072,0.000187396,2.268308319,0.02399799,pos,ns,0.735103979,Klhl32,Klhl32_Intron,4,24669566,24669615,24669614,24669615,50,-,GACAATGATTGACAGCCAAACTATATCCGTGCAATATCCAAGACTGCACG,"Intron (Klhl32-203/Klhl32, intron 5 of 7)",4,24612554,24800890,188337,2,Klhl32-203,131275,Klhl32-203;Klhl32-204;Klhl32-207;Klhl32-205;Klhl32-201;Klhl32-202;Klhl32-206,Klhl32;Klhl32;Klhl32;Klhl32;Klhl32;Klhl32;Klhl32,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,10,212390,ENSMUSG00000040387,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5178,cg15701937,0.0000192,0.0000035,5.480853827,8.78E-08,gain,yes,-0.00000574,0.00000595,-0.963437028,0.336079176,neg,ns,0.002394565,0.001744453,1.372673228,0.170846183,pos,ns,0.767394719,-0.0000218,0.00006,-0.362951789,0.716888248,neg,ns,0.058409028,Prrxl1,Prrxl1_Promoter,14,32599306,32599355,32599354,32599355,50,+,TACTCGCTGTAGACAGCGCTGGAAATAATCAGATTAAGGCCAATTATGCG,Promoter (<=1kb),14,32599407,32649204,49798,1,Prrxl1-203,-52,Prrxl1-203;Prrxl1-204;Prrxl1-202;Prrxl1-201;Prrxl1-205,Prrxl1;Prrxl1;Prrxl1;Prrxl1;Prrxl1,0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,14,23,107751,ENSMUSG00000041730,conserved gene and region,14,32599310,32599392,83,*,83,9,0.530120482,1.667410714,0.108433735,0.00000018,CpGisland,TRUE,U13,Hc-P
13469,cg12217909,-0.00000164,0.00000355,-0.462549741,0.644011637,loss,ns,-0.00000582,0.00000604,-0.963288211,0.336153712,neg,ns,-0.007315316,0.001768709,-4.135963335,0.0000456,neg,ns,4.341355911,0.000073,0.0000608,1.199575912,0.231220109,pos,ns,0.899515523,Camta2,Camta2_Exon,11,70682987,70683036,70683035,70683036,50,-,CCTTTCCACAGTCCTCCAGGGCTGGGACGTTCAGGTAGTGCACAAGGACG,"Exon (Camta2-208/Camta2, exon 6 of 21)",11,70669463,70686389,16927,2,Camta2-208,3353,Camta2-208;Camta2-204;Camta2-206;Camta2-201;Camta2-202;Camta2-203;Camta2-205;Camta2-207;Camta2-209,Camta2;Camta2;Camta2;Camta2;Camta2;Camta2;Camta2;Camta2;Camta2,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,4,216874,ENSMUSG00000040712,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15433,cg16976603,-0.00000527,0.00000114,-4.638571889,0.00000518,loss,ns,0.00000186,0.00000193,0.963254376,0.33617066,pos,ns,0.000648178,0.00056498,1.147258477,0.25215946,pos,ns,0.598324734,-0.0000194,0.0000194,-0.998957378,0.318594446,neg,ns,0.04045311,Arrdc3,Arrdc3_Exon,13,80884866,80884915,80884866,80884867,50,+,CGCGTCAGGTGGTGGCGATGACTTAATTCCTAGCCCAAGAAGAATATAAT,"Exon (1700023H06Rik-201/1700023H06Rik-201, exon 2 of 2)",13,80883384,80889643,6260,1,Arrdc3-202,1482,Arrdc3-202;Arrdc3-203;Arrdc3-201;Arrdc3-205,Arrdc3;Arrdc3;Arrdc3;Arrdc3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,8,105171,ENSMUSG00000074794,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
26033,cg03085335,0.0000098,0.00000436,2.248788688,0.025227926,gain,ns,-0.00000713,0.00000741,-0.963246163,0.336174774,neg,ns,-0.001274599,0.00216954,-0.587497474,0.557297318,neg,ns,0.253913047,0.00000919,0.0000746,0.123206711,0.902023252,pos,ns,0.818927683,Kcnq1,Kcnq1_Intron,7,143320457,143320506,143320505,143320506,50,+,ACTGAAACCCTAACCTTCGGGCTTCCCCACTAATTTGTGATAAGGCCTCG,"Intron (Kcnq1-201/Kcnq1, intron 11 of 15)",7,143107254,143427042,319789,1,Kcnq1-201,213203,Kcnq1-201;Kcnq1-202,Kcnq1;Kcnq1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,9,16535,ENSMUSG00000009545,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10428,cg17025275,0.0000169,0.00000304,5.558687975,5.87E-08,gain,yes,-0.00000497,0.00000516,-0.963194056,0.336200876,neg,ns,0.003897414,0.001512931,2.576068208,0.010455854,pos,ns,1.980640479,0.0000847,0.000052,1.627522858,0.104642013,pos,ns,0.101786181,Septin8,Septin8_fiveUTR,11,53519867,53519916,53519915,53519916,50,+,GCCGCCAAGGGGAGTTTCCAGGAAGTGGCCATATTGGATCCATTCAGCCG,Promoter (<=1kb),11,53519908,53541898,21991,1,Septin8-203,0,Septin8-205;Septin8-201;Septin8-204;Septin8-202;Septin8-203;Septin8-207,Septin8;Septin8;Septin8;Septin8;Septin8;Septin8,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,6,9,,NA,mapped to different genes,11,53519650,53519870,221,*,221,27,0.778280543,0.808536585,0.122171946,2.06E-23,CpGisland,TRUE,U1,Pr-A
25453,cg20825440,0.0000236,0.0000037,6.373158516,6.70E-10,gain,yes,-0.00000605,0.00000628,-0.963153255,0.336221315,neg,ns,0.003257131,0.001841092,1.769130139,0.077855358,pos,ns,1.108711494,-0.0000332,0.0000633,-0.524617304,0.600224194,neg,ns,0.051057073,Snap25,Snap25_fiveUTR,2,136713451,136713500,136713499,136713500,50,-,GCCATCTTTGATGAGGGCAGAGCTCACGTTGCATTGAAGACGAAACCTCG,Promoter (<=1kb),2,136713453,136782428,68976,1,Snap25-201,0,Snap25-201;Snap25-203;Snap25-202,Snap25;Snap25;Snap25,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,9,20614,ENSMUSG00000027273,mapped to different genes,2,136713303,136713620,318,*,318,18,0.628930818,0.613899614,0.056603774,9.25E-10,CpGisland,TRUE,U13,Hc-P
8789,cg05951790,-0.00000175,0.00000167,-1.042790728,0.297857749,loss,ns,0.00000274,0.00000284,0.963129441,0.336233245,pos,ns,0.001124633,0.000833468,1.349340927,0.17821213,pos,ns,0.74906274,-0.0000511,0.0000287,-1.784196963,0.075369627,neg,ns,0.962582445,Oga,Oga_Intron,19,45761597,45761646,45761597,45761598,50,+,CGCTTTATCCCCAAAGCAATGCGCTTCAGTTTGCTGTGCGCAGCAGAGCA,"Intron (Oga-201/Oga, intron 11 of 15)",19,45750259,45783551,33293,2,Oga-201,21905,Oga-201;Oga-204;Oga-203;Oga-206,Oga;Oga;Oga;Oga,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,21,76055,ENSMUSG00000025220,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4951,cg19848521,-0.0000529,0.0000062,-8.53017061,6.57E-16,loss,yes,0.0000101,0.0000105,0.962854201,0.33637115,pos,ns,0.003919788,0.003085093,1.270557591,0.204838776,pos,ns,0.688587827,-0.000267089,0.000106096,-2.517425437,0.012325549,neg,ns,0.657845699,Podxl,Podxl_Exon,6,31523167,31523216,31523215,31523216,50,-,GGGTTGTCATGGTAACCATTCTCCACTGTCTGCAGCTCCTCTGTTAGCCG,"Exon (Podxl-201/Podxl, exon 8 of 8)",6,31519488,31563981,44494,2,Podxl-201,40765,Podxl-201;Podxl-202,Podxl;Podxl,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,27205,ENSMUSG00000025608,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16817,cg01648756,0.000000302,0.00000254,0.119021114,0.905335718,gain,ns,0.00000416,0.00000432,0.962841376,0.336377577,pos,ns,0.001963503,0.001264595,1.5526742,0.121521273,pos,ns,0.915347691,-0.0000282,0.0000435,-0.649344461,0.516596564,neg,ns,0.950286078,Lrba,Lrba_Exon,3,86605939,86605988,86605939,86605940,50,+,CGTTATCTTTTGCAAAATACAGCCCTGGAGATCTTTATGGCAAACAGAGG,"Exon (Lrba-202/Lrba, exon 41 of 51)",3,86224680,86746712,522033,1,Lrba-202,381259,Lrba-202;Lrba-204;Lrba-201;Lrba-203;Lrba-205;Lrba-206,Lrba;Lrba;Lrba;Lrba;Lrba;Lrba,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,17,45,80877,ENSMUSG00000028080,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24866,cg15293322,-0.0000291,0.00000845,-3.44362468,0.000652933,loss,ns,0.0000138,0.0000144,0.962819092,0.336388744,pos,ns,-0.002376058,0.004204217,-0.56516071,0.572373229,neg,ns,0.242320687,-0.000249728,0.000144583,-1.727232257,0.085122013,neg,ns,0.645409554,Gm9387,Gm9387_Intergenic_upstream,3,129064288,129064337,129064336,129064337,50,-,CTGACATCCACTCAGAGAAGTAATAACTTGCCAAATCCTACTTATCAACG,Distal Intergenic,3,128953779,128955098,1320,2,Gm9387-201,-109239,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,668831,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27843,cg03563956,0.0000359,0.0000129,2.780792738,0.005754383,gain,ns,0.0000211,0.0000219,0.962738584,0.33642909,pos,ns,0.025989593,0.006418496,4.049172068,0.000065,pos,ns,4.187127723,-0.000401766,0.000220732,-1.820158875,0.069699017,neg,ns,0.894968536,Esrrg,Esrrg_Intron,1,188199790,188199839,188199838,188199839,50,+,TTGTTTTCTGGGGCCATATGTGACGATCAATCTCAGGCTGGGCTCAGCCG,"Intron (Esrrg-203/Esrrg, intron 7 of 7)",1,187609029,188214386,605358,1,Esrrg-203,590761,Esrrg-203;Esrrg-201;Esrrg-202,Esrrg;Esrrg;Esrrg,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,60,26381,ENSMUSG00000026610,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6981,cg09093559,-0.00000801,0.00000372,-2.150652981,0.032276465,loss,ns,-0.00000609,0.00000633,-0.962665915,0.33646551,neg,ns,-0.002313094,0.001853854,-1.247722038,0.213074545,neg,ns,0.671468429,-0.00000267,0.0000638,-0.041864563,0.966633617,neg,ns,0.948448409,Sorbs1,Sorbs1_Exon,19,40327476,40327525,40327476,40327477,50,-,CGCTTGAGCCCACTCAGGCCCTGAAGAGGGATGTCACCACCTTCCAAGAC,"Exon (Sorbs1-227/Sorbs1, exon 10 of 20)",19,40294753,40376874,82122,2,Sorbs1-227,49349,Sorbs1-227;Sorbs1-225;Sorbs1-208;Sorbs1-212;Sorbs1-211;Sorbs1-213;Sorbs1-226;Sorbs1-221;Sorbs1-201;Sorbs1-202;Sorbs1-203;Sorbs1-204;Sorbs1-206,Sorbs1;Sorbs1;Sorbs1;Sorbs1;Sorbs1;Sorbs1;Sorbs1;Sorbs1;Sorbs1;Sorbs1;Sorbs1;Sorbs1;Sorbs1,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,7,20411,ENSMUSG00000025006,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9988,cg23952337,0.0000137,0.0000113,1.205459661,0.228945231,gain,ns,-0.0000185,0.0000192,-0.962609503,0.336493784,neg,ns,-0.002941121,0.005635833,-0.521860957,0.602139807,neg,ns,0.220302661,-0.00030722,0.000193816,-1.585111354,0.113960569,neg,ns,0.768302455,Satb1,Satb1_Intron,17,51791357,51791406,51791405,51791406,50,-,AACTATAAAGACAGATGTCAAAAACTGTTTACACAGAGCAATCAGGAGCG,"Intron (Satb1-208/Satb1, intron 5 of 10)",17,51736187,51832672,96486,2,Satb1-208,41266,Satb1-208;Satb1-213;Satb1-204;Satb1-214;Satb1-203;Satb1-211;Satb1-207,Satb1;Satb1;Satb1;Satb1;Satb1;Satb1;Satb1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,28,36,20230,ENSMUSG00000023927,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1276,cg17134427,-0.00000102,0.00000271,-0.378009711,0.705682082,loss,ns,-0.00000443,0.0000046,-0.962451094,0.336573188,neg,ns,-0.000112444,0.001348874,-0.083361086,0.933618232,neg,ns,0.029830676,-0.00001,0.0000464,-0.215990103,0.829137512,neg,ns,0.947959448,Zfr,Zfr_Exon,15,12159600,12159649,12159600,12159601,50,-,CGTTATGAAGAGGACATGTACTGGAGGAGAATGGAGGAAGAACAACATCA,Promoter (<=1kb),15,12159620,12166220,6601,1,Zfr-207,0,Zfr-201;Zfr-207;Zfr-208,Zfr;Zfr;Zfr,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,12,22763,ENSMUSG00000022201,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12981,cg01658829,-9.38E-08,0.00000119,-0.078743497,0.937287451,loss,ns,-0.00000195,0.00000202,-0.962362316,0.336617694,neg,ns,0.001142538,0.000592665,1.927797947,0.054793576,pos,ns,1.261270352,-0.0000281,0.0000204,-1.377167304,0.169454115,neg,ns,0.964285942,Smc4,Smc4_threeUTR,3,69016189,69016238,69016189,69016190,50,-,CGGCTAAATGAACCTATTAAAGTCTTGTGTCGGAGAGTTGAAATATTAAA,3' UTR,3,69004738,69034623,29886,1,Smc4-201,11451,Smc4-201;Smc4-206;Smc4-202;Smc4-207;Smc4-211;Smc4-205;Smc4-203;Smc4-209,Smc4;Smc4;Smc4;Smc4;Smc4;Smc4;Smc4;Smc4,0;0;0;0;0;-252;-458;-2677,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,4,70099,ENSMUSG00000034349,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6773,cg25116344,0.0000193,0.00000902,2.134941398,0.033549663,gain,ns,-0.0000147,0.0000153,-0.962290207,0.336653847,neg,ns,-0.004404993,0.004487954,-0.981514721,0.32710436,neg,ns,0.485313667,0.00000389,0.00015434,0.02519607,0.979914783,pos,ns,0.604120379,Lhx2,Lhx2_Intergenic_downstream,2,38395402,38395451,38395402,38395403,50,+,CGCAGGCTGAATGGAATGGAAATGACATCATGTTTATTCAGGAAAGATGT,Distal Intergenic,2,38353802,38360089,6288,1,Lhx2-206,41600,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,33,16870,ENSMUSG00000000247,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22001,cg26242759,-0.0000599,0.0000213,-2.806244427,0.005329372,loss,ns,-0.0000349,0.0000363,-0.962224933,0.336686574,neg,ns,-0.012160903,0.01062098,-1.144988841,0.253096992,neg,ns,0.596713017,-0.000621038,0.000365255,-1.700286837,0.09007993,neg,ns,0.187691635,Zfp143,Zfp143_Promoter,7,110061778,110061827,110061826,110061827,50,+,TCGTATATAAATGTGTTTTTACCCAGTGTGCATTATTCTCCGCCTGGCCG,Promoter (<=1kb),7,110061217,110094808,33592,1,Zfp143-204,561,Zfp143-204;Zfp143-205;Zfp143-201;Zfp143-202,Zfp143;Zfp143;Zfp143;Zfp143,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,3,7,20841,ENSMUSG00000061079,conserved gene and region,7,110061325,110061866,542,*,542,40,0.590405904,0.850196078,0.073800738,2.91E-25,CpGisland,TRUE,U1,Pr-A
21970,cg03420509,-0.00000665,0.0000028,-2.376281681,0.018095315,loss,ns,-0.00000457,0.00000475,-0.962213511,0.336692302,neg,ns,-0.001139262,0.001392358,-0.818224826,0.413857309,neg,ns,0.38314937,0.00000641,0.0000479,0.133839584,0.89361627,pos,ns,0.905317155,Faf1,Faf1_Intron,4,109859085,109859134,109859085,109859086,50,-,CGCTTGTCTTCTCAGCATGGATGTTTAATCTTCCTAGGCTTTGTGAATTG,"Intron (Faf1-201/Faf1, intron 12 of 18)",4,109676588,109963960,287373,1,Faf1-201,182497,Faf1-201;Faf1-203,Faf1;Faf1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,24,14084,ENSMUSG00000010517,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20717,cg25334215,-0.00000034,0.00000109,-0.311016572,0.755997053,loss,ns,0.00000179,0.00000186,0.962141881,0.336728219,pos,ns,0.001638489,0.000543784,3.01312393,0.002798919,pos,ns,2.55300974,-0.0000428,0.0000187,-2.291128849,0.022626603,neg,ns,0.963130954,Cstf3,Cstf3_Exon,2,104609112,104609161,104609112,104609113,50,+,CGGAAGACTTATGAACGCCTTGTTGCCCAGTTCCCCAGTTCTGGCAGATT,"Exon (Cstf3-201/Cstf3, exon 3 of 21)",2,104590523,104665429,74907,1,Cstf3-201,18589,Cstf3-201;Cstf3-202;Cstf3-206,Cstf3;Cstf3;Cstf3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,6,228410,ENSMUSG00000027176,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1983,cg17037716,-0.0000552,0.0000115,-4.784487045,0.00000266,loss,ns,0.0000188,0.0000196,0.96210966,0.336744376,pos,ns,-0.001790188,0.005738908,-0.311938822,0.755296717,neg,ns,0.121882403,-0.000162681,0.000197361,-0.824280909,0.410413712,neg,ns,0.767920955,Gm5283,Gm5283_Intergenic_downstream,3,16820584,16820633,16820632,16820633,50,+,ACAGCCTGTAATCACTTCCTTTGTCATCGACGATTAATCTAAAAAAATCG,Distal Intergenic,3,17230642,17230975,334,2,Gm5283-201,410342,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,10,383936,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1446,cg24423513,0.000480033,0.0000239,20.05641361,6.04E-58,gain,yes,0.0000391,0.0000407,0.96206014,0.336769209,pos,ns,-0.007685706,0.011912273,-0.645192259,0.519279813,neg,ns,0.28459856,0.001665535,0.000409662,4.065631506,0.0000608,pos,ns,0.499113052,C1ql3,C1ql3_Exon,2,13010251,13010300,13010251,13010252,50,-,CGCGCTCACCTGGTTGTTTTTGCAGAGATCAGCCCACATGCTGGTGCCGT,"Exon (C1ql3-201/C1ql3, exon 1 of 2)",2,13003457,13011806,8350,2,C1ql3-201,1506,C1ql3-201,C1ql3,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,9,227580,ENSMUSG00000049630,conserved gene but different region,2,13010085,13010254,170,*,170,13,0.688235294,0.757887517,0.076470588,9.43E-09,CpGisland,TRUE,U3,Pr-B
17148,cg02955922,-0.0000142,0.00000775,-1.828985872,0.068362288,loss,ns,0.0000127,0.0000132,0.961877772,0.336860672,pos,ns,-0.001705678,0.003854841,-0.442476915,0.658452693,neg,ns,0.181475422,0.0000428,0.000132568,0.322960356,0.746942995,pos,ns,0.892905939,Rps6-ps2,Rps6-ps2_Intergenic_upstream,8,88793848,88793897,88793896,88793897,50,+,TAACAAGCCCTGGTATTAATGAGATTGCTCTATAATTGAACCTTTTCACG,Distal Intergenic,8,88806391,88807137,747,1,Rps6-ps2-201,-12494,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,14,675985,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5804,cg22411965,-0.00000303,0.0000022,-1.372415125,0.170926393,loss,ns,-0.0000036,0.00000375,-0.96169785,0.336950925,neg,ns,-0.000580753,0.001097271,-0.529270067,0.596996905,neg,ns,0.22402792,-0.000064,0.0000377,-1.696033784,0.090883414,neg,ns,0.93075983,Kdm3b,Kdm3b_threeUTR,18,34833344,34833393,34833392,34833393,50,+,GATCATGACCCAATTCATGACCAAAGTTGGTACCTGGACCAGACCCTCCG,3' UTR,18,34777047,34838660,61614,1,Kdm3b-201,56297,Kdm3b-201;Kdm3b-206;Kdm3b-202,Kdm3b;Kdm3b;Kdm3b,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,6,277250,ENSMUSG00000038773,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9508,cg13177866,0.00000688,0.00000124,5.572084445,5.47E-08,gain,yes,0.00000202,0.0000021,0.961694957,0.336952376,pos,ns,0.000690201,0.00061469,1.12284481,0.262372269,pos,ns,0.581082069,0.000016,0.0000211,0.755956934,0.450249062,pos,ns,0.968336299,Usp28,Usp28_Exon,9,49015106,49015155,49015154,49015155,50,-,ACCCTTTTGTAACAATGAGACCTTCGGCCAGTATCCTCTTCAGGTAAACG,"Exon (Usp28-203/Usp28, exon 10 of 24)",9,48985414,49042510,57097,1,Usp28-203,29692,Usp28-203;Usp28-201;Usp28-208;Usp28-205,Usp28;Usp28;Usp28;Usp28,0;0;0;-3130,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,235323,ENSMUSG00000032267,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4035,cg12041353,-0.0000143,0.00000379,-3.758360377,0.000204341,loss,ns,-0.0000062,0.00000645,-0.96163983,0.336980032,neg,ns,-0.004391813,0.001888528,-2.325522421,0.020689075,neg,ns,1.684258923,-0.0000507,0.0000649,-0.779889899,0.436050709,neg,ns,0.060958795,Smarca2,Smarca2_fiveUTR,19,26605101,26605150,26605101,26605102,50,-,CGAGTTTAGGAAGAGGAGGGGACGGCTGTCATCAATGAAGTCATATTCAT,Promoter (<=1kb),19,26605119,26778275,173157,1,Smarca2-209,0,Smarca2-216;Smarca2-232;Smarca2-201;Smarca2-209;Smarca2-202,Smarca2;Smarca2;Smarca2;Smarca2;Smarca2,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,8,67155,ENSMUSG00000024921,conserved gene and region,19,26604451,26605163,713,*,713,59,0.636746143,0.819492334,0.082748948,6.86E-40,CpGisland,TRUE,U2,Pr-W
9003,cg08742313,-0.000000715,0.000000408,-1.752353233,0.080701739,loss,ns,0.000000666,0.000000693,0.961547586,0.337026312,pos,ns,0.000401491,0.00020307,1.977107395,0.048915224,pos,ns,1.310555954,-0.000012,0.00000698,-1.716372181,0.087092908,neg,ns,0.010075169,Trim8,Trim8_Exon,19,46502908,46502957,46502956,46502957,50,+,CTGCGAGGCCGAGCAGGTGGCCGTGTGCCAGTACTGCTGCTACTACAGCG,"Exon (Trim8-201/Trim8, exon 1 of 6)",19,46501702,46516848,15147,1,Trim8-201,1206,Trim8-201,Trim8,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,15,21,93679,ENSMUSG00000025034,conserved gene and region,19,46502503,46503142,640,*,640,53,0.6359375,0.821705426,0.0828125,6.38E-36,CpGisland,TRUE,U1,Pr-A
26830,cg08642246,-0.000017,0.00000657,-2.582579878,0.010264738,loss,ns,0.0000107,0.0000112,0.961466387,0.337067053,pos,ns,0.004206434,0.003268287,1.287045485,0.199038604,pos,ns,0.701062683,-0.000164103,0.000112396,-1.460038762,0.145292079,neg,ns,0.852151505,Smg7,Smg7_Exon,1,152866657,152866706,152866657,152866658,50,-,CGATTCTTTGCCTGGCCTTGCAGTGTTGTGATCTGATTCTTAAAGGCGTG,"Exon (Smg7-202/Smg7, exon 4 of 22)",1,152836995,152902622,65628,2,Smg7-202,35916,Smg7-202;Smg7-201;Smg7-203;Smg7-204,Smg7;Smg7;Smg7;Smg7,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,7,226517,ENSMUSG00000042772,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12579,cg24492259,0.000000728,0.00000204,0.355960675,0.722112132,gain,ns,0.00000334,0.00000347,0.96143043,0.337085096,pos,ns,0.002149453,0.001017314,2.112871619,0.035410863,pos,ns,1.450863488,-0.000107134,0.000035,-3.062263485,0.002389193,neg,ns,0.948110851,Myocd,Myocd_Intergenic_upstream,11,65435864,65435913,65435864,65435865,50,-,CGTCAGGTGCCACGGGCAGCATAAATATTCCATGTGCACTTGTTTATAGG,Distal Intergenic,11,65176574,65269989,93416,2,Myocd-203,-165924,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,3,214384,ENSMUSG00000020542,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2883,cg08716535,0.0000396,0.00000985,4.02475738,0.0000717,gain,ns,-0.0000161,0.0000167,-0.961294451,0.337153333,neg,ns,-0.007978138,0.004901364,-1.62773853,0.104596229,neg,ns,0.980483973,0.000544992,0.000168557,3.2332695,0.001355701,pos,ns,0.789428639,Ehbp1,Ehbp1_Exon,11,22006819,22006868,22006867,22006868,50,-,TGCCTTTGTTTTGCTCCAGAGTTCGCTCCAAATGCTCATCTTCTTCTTCG,"Exon (Ehbp1-201/Ehbp1, exon 24 of 24)",11,22005828,22285838,280011,2,Ehbp1-201,278970,Ehbp1-201;Ehbp1-202;Ehbp1-207;Otx1-202,Ehbp1;Ehbp1;Ehbp1;Otx1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,11,45,216565,ENSMUSG00000042302,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
17663,cg05911522,0.0000282,0.00000368,7.672030012,2.21E-13,gain,yes,-0.000006,0.00000624,-0.961289275,0.337155931,neg,ns,0.002176134,0.001829521,1.189455315,0.235170773,pos,ns,0.628616653,0.0000041,0.0000629,0.065202529,0.948054774,pos,ns,0.045907821,Zic4,Zic4_fiveUTR,9,91368930,91368979,91368978,91368979,50,+,GGGTTGTAGAAGTTATCAAGTGGGATTTGCGGCGCTCTCTGCAGGAAACG,Promoter (<=1kb),9,91368970,91387793,18824,1,Zic4-204,0,Zic1-201;Zic1-202;Zic4-208;Zic4-206;Zic4-207;Zic4-211;Zic4-204;Zic4-203;Zic4-210;Zic4-209;Zic4-212,Zic1;Zic1;Zic4;Zic4;Zic4;Zic4;Zic4;Zic4;Zic4;Zic4;Zic4,0;0;0;0;0;0;0;0;-2025;0;-2371,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,55,22774,ENSMUSG00000036972,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
23699,cg03143196,0.000000516,0.00000169,0.30540177,0.760265137,gain,ns,0.00000276,0.00000287,0.961236031,0.337182653,pos,ns,0.000801634,0.000841016,0.953172515,0.341245287,pos,ns,0.466933338,-0.0000256,0.0000289,-0.886769015,0.375890691,neg,ns,0.952011134,Mga,Mga_Exon,2,119938511,119938560,119938511,119938512,50,+,CGCAGGCTAAGTTGCTATTGGGACAGATGGGGGCATTGCATCCAGCCAAT,"Exon (Mga-208/Mga, exon 2 of 2)",2,119897228,119967749,70522,1,Mga-201,41283,Mga-201;Mga-202;Mga-203;Mga-204;Mga-215;Mga-208;Mga-214;Mga-213;Mga-209;Mga-212,Mga;Mga;Mga;Mga;Mga;Mga;Mga;Mga;Mga;Mga,0;0;0;0;0;0;0;0;0;-3195,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,9,29808,ENSMUSG00000033943,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16904,cg02661743,-0.00000516,0.00000412,-1.251163628,0.211818172,loss,ns,0.00000674,0.00000701,0.961140961,0.337230369,pos,ns,0.002272799,0.002052957,1.107085522,0.269115256,pos,ns,0.570061682,-0.0000571,0.0000706,-0.809058154,0.419102205,neg,ns,0.863723273,Ppm1e,Ppm1e_Exon,11,87231452,87231501,87231452,87231453,50,-,CGTTGATTTGGGACCCTGGGCTCAGGCTAGTTCTATCAGTGAATGAATCC,"Exon (Ppm1e-201/Ppm1e, exon 7 of 7)",11,87226906,87359023,132118,2,Ppm1e-201,127522,Ppm1e-201,Ppm1e,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,320472,ENSMUSG00000046442,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1940,cg12358946,-0.0000245,0.00000464,-5.279552223,0.000000244,loss,yes,-0.00000758,0.00000789,-0.96108077,0.337260581,neg,ns,-0.004378818,0.002311173,-1.89463029,0.05907184,neg,ns,1.228619504,0.0000744,0.0000795,0.936484152,0.34975294,pos,ns,0.92923356,Tfec,Tfec_Intron,6,16553914,16553963,16553962,16553963,50,-,TAATTTATTCAAATTGCTGAACTCAGAATGGCAGAGCAATCTACAGTCCG,"Intron (Gm36503-201/Gm36503-201, intron 1 of 2)",6,16834692,16835263,572,2,Tfec-204,281349,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,23,21426,ENSMUSG00000029553,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11502,cg20118357,0.0000452,0.00000631,7.175098524,5.36E-12,gain,yes,-0.0000103,0.0000107,-0.960983568,0.337309375,neg,ns,-0.0025307,0.003138497,-0.806341427,0.42066415,neg,ns,0.376064498,0.000116984,0.000107933,1.08386509,0.279266872,pos,ns,0.771177348,Nptn,Nptn_Exon,9,58618859,58618908,58618859,58618860,50,-,CGGCGTGAGTGTGCTGAGAATAACCCGGCTCACCTTGGAGGACTCTGGGA,"Exon (Nptn-212/Nptn, exon 2 of 8)",9,58582240,58651318,69079,1,Nptn-212,36619,Nptn-212;Nptn-201;Nptn-213;Nptn-206;Nptn-203;Nptn-202;Nptn-211;Nptn-207;Nptn-204,Nptn;Nptn;Nptn;Nptn;Nptn;Nptn;Nptn;Nptn;Nptn,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,20,22,20320,ENSMUSG00000032336,conserved gene and region,9,58618678,58618932,255,*,255,20,0.6,0.879917184,0.078431373,1.96E-13,CpGisland,TRUE,NA,NRS
21736,cg19079970,-0.00000424,0.00000143,-2.958892678,0.003325259,loss,ns,-0.00000234,0.00000244,-0.960957683,0.337322369,neg,ns,-0.002167646,0.000713513,-3.037993172,0.002584117,neg,ns,2.587687745,0.0000537,0.0000245,2.186560704,0.029521922,pos,ns,0.964867385,Zfhx3,Zfhx3_Intron,8,108942656,108942705,108942704,108942705,50,-,CTTACTGCCTTCTTGAATCCCAATCAGGAATTATGATTAAAGTCGCAGCG,"Intron (Zfhx3-204/Zfhx3, intron 13 of 15)",8,107942644,108961630,1018987,1,Zfhx3-204,1000012,Zfhx3-204;Zfhx3-201,Zfhx3;Zfhx3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,114,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15494,cg19367422,-0.0000205,0.00000635,-3.22205989,0.001408061,loss,ns,0.0000104,0.0000108,0.960946207,0.337328131,pos,ns,-0.002621366,0.003162876,-0.828791852,0.407859862,neg,ns,0.389489032,-0.0000625,0.000108771,-0.57442205,0.566098821,neg,ns,0.615872476,Slc8a3,Slc8a3_fiveUTR,12,81214081,81214130,81214129,81214130,50,+,CCATCCATTTCGGTTCACCAAGGGCAATGAAGAAATTCTCTTGCCTTTCG,5' UTR,12,81197915,81333164,135250,2,Slc8a3-202,119034,Slc8a3-202;Slc8a3-201;Slc8a3-203;Slc8a3-204;Slc8a3-205,Slc8a3;Slc8a3;Slc8a3;Slc8a3;Slc8a3,0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,2,110893,ENSMUSG00000079055,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10044,cg02953590,0.00000058,0.0000012,0.484141693,0.628627161,gain,ns,-0.00000195,0.00000203,-0.96089631,0.337353181,neg,ns,0.00000741,0.000595958,0.012436502,0.990085362,pos,ns,0.00432736,0.0000182,0.0000205,0.889099939,0.374638765,pos,ns,0.034457847,Maml3,Maml3_Exon,3,52103827,52103876,52103827,52103828,50,-,CGCTCCAGCTCCAGCTGCTCCACCTGAGCCTGCTGGTACCTGTTCTCGCA,"Exon (Maml3-202/Maml3, exon 1 of 5)",3,51685907,52105076,419170,2,Maml3-202,1200,Maml3-202,Maml3,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,32,433586,ENSMUSG00000061143,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
27371,cg17890349,-0.00000281,0.00000197,-1.424769991,0.155229641,loss,ns,-0.00000322,0.00000335,-0.960821016,0.337390983,neg,ns,-0.000986861,0.000982729,-1.004204813,0.316063095,neg,ns,0.500226212,-0.00000748,0.0000338,-0.221396487,0.82492949,neg,ns,0.951201673,Zmynd8,Zmynd8_Exon,2,165846032,165846081,165846080,165846081,50,+,GACAAAACCAGTCCCCCTCTGGTTCCGATGTCAGTCTCAGACACTTAGCG,"Exon (Zmynd8-205/Zmynd8, exon 3 of 22)",2,165784152,165858173,74022,2,Zmynd8-205,12092,Zmynd8-205;Zmynd8-221;Zmynd8-203;Zmynd8-220;Zmynd8-201;Zmynd8-206;Zmynd8-218;Zmynd8-202;Zmynd8-219;Zmynd8-204;Zmynd8-215;Zmynd8-209;Zmynd8-211;Zmynd8-210,Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,12,228880,ENSMUSG00000039671,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10743,cg11200738,-0.00000447,0.00000128,-3.499463165,0.00053451,loss,ns,0.00000209,0.00000217,0.960559184,0.337522462,pos,ns,0.000420314,0.000636098,0.660769868,0.509250641,pos,ns,0.293068416,0.00000313,0.0000219,0.142969832,0.886406889,pos,ns,0.042613009,Zfhx2,Zfhx2_fiveUTR,14,55091980,55092029,55092028,55092029,50,-,CAGCAGCATCGGAAATCGATGCACTTACACCTCAGCTGGAAGCAGGGACG,Promoter (<=1kb),14,55060262,55092324,32063,2,Zfhx2-201,295,Thtpa-201;Zfhx2-201;Zfhx2-204,Thtpa;Zfhx2;Zfhx2,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,8,239102,ENSMUSG00000040721,mapped to different genes,14,55091989,55092102,114,*,114,12,0.675438597,0.970212766,0.105263158,9.79E-10,CpGisland,TRUE,U1,Pr-A
24576,cg03445175,0.000000414,0.000000612,0.677576017,0.498545927,gain,ns,0.000000998,0.00000104,0.960247084,0.337679225,pos,ns,0.0000169,0.000304351,0.055444334,0.955820193,pos,ns,0.019623799,-0.00000329,0.0000105,-0.314229636,0.753557998,neg,ns,0.009231855,Maz,Maz_Exon,7,127025337,127025386,127025385,127025386,50,-,TAGGGCTTGTGCACAGCGCCGTCATGTGAGCGCACGTGGTAGCTCATGCG,"Exon (Maz-203/Maz, exon 2 of 6)",7,127022130,127026526,4397,2,Maz-203,1140,Gm42742-203;Gm42742-204;Gm42742-202;Kif22-202;Kif22-201;Kif22-205;Kif22-206;Maz-203;Maz-201;Maz-204;Maz-202;Maz-206;Maz-205;Prrt2-201;Prrt2-202;Prrt2-205;Prrt2-206;Prrt2-207,Gm42742;Gm42742;Gm42742;Kif22;Kif22;Kif22;Kif22;Maz;Maz;Maz;Maz;Maz;Maz;Prrt2;Prrt2;Prrt2;Prrt2;Prrt2,0;0;0;3571;17085;2730;7318;0;0;0;0;0;0;0;0;-4381;-4200;-4982,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,16,17,17188,ENSMUSG00000030678,conserved gene and region,7,127025353,127025621,269,*,269,30,0.669144981,1.002359955,0.111524164,1.16E-24,CpGisland,TRUE,NA,NRS
20366,cg27002522,0.0000762,0.0000137,5.575251349,5.38E-08,gain,yes,-0.0000223,0.0000232,-0.960057106,0.337774672,neg,ns,-0.005257446,0.006798545,-0.773319165,0.439922785,neg,ns,0.356623544,0.000115633,0.000233801,0.494578858,0.62124774,pos,ns,0.444578608,Hoxc5,Hoxc5_fiveUTR,15,103013946,103013995,103013946,103013947,50,+,CGCATAGGATAAAGAAAGAGATATCTCCACCTATAAATTGTCCACTTTGG,5' UTR,15,102967443,103015676,48234,1,Hoxc5-202,46503,Hoxc4-202;Hoxc5-202;Hoxc5-201;Hoxc6-202;Hoxc6-203;Hoxc6-201,Hoxc4;Hoxc5;Hoxc5;Hoxc6;Hoxc6;Hoxc6,0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,13,134,15424,ENSMUSG00000022485,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
17035,cg26607428,0.0000668,0.000012,5.582291859,5.19E-08,gain,yes,-0.0000195,0.0000203,-0.960015211,0.337795722,neg,ns,0.019979925,0.005952746,3.356421608,0.00088787,pos,ns,3.051650689,-0.000358881,0.000204714,-1.753079663,0.080576758,neg,ns,0.138867873,Mllt3,Mllt3_Exon,4,88031548,88031597,88031548,88031549,50,-,CGTGCAAGTGGAAGACGACTTTCTCCACAAAGTGCTGTATGTTACTGTGC,"Exon (Mllt3-201/Mllt3, exon 2 of 11)",4,87769925,88033364,263440,2,Mllt3-201,1767,Mllt3-201;Mllt3-203;Mllt3-205;Mllt3-206,Mllt3;Mllt3;Mllt3;Mllt3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,13,70122,ENSMUSG00000028496,conserved gene but different region,4,88031274,88031627,354,*,354,40,0.641242938,1.102803738,0.11299435,5.51E-33,CpGisland,TRUE,NA,NRS
6709,cg17316594,0.000100339,0.0000209,4.793519209,0.00000255,gain,ns,-0.0000341,0.0000356,-0.960010959,0.337797859,neg,ns,0.027544748,0.010418172,2.64391366,0.008612288,pos,ns,2.064881432,-0.000681046,0.00035828,-1.900875956,0.058245571,neg,ns,0.344178683,Dennd1a,Dennd1a_Intron,2,38144518,38144567,38144518,38144519,50,-,CGCTGCTTGTTTTGACAGTGGATCCCCCTAGATAGTTGGGATTAGTCGAG,"Intron (Dennd1a-201/Dennd1a, intron 3 of 21)",2,37798991,38287375,488385,2,Dennd1a-201,142808,Dennd1a-201;Dennd1a-207;Dennd1a-210;Dennd1a-204;Dennd1a-202;Dennd1a-209;Dennd1a-208,Dennd1a;Dennd1a;Dennd1a;Dennd1a;Dennd1a;Dennd1a;Dennd1a,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,46,227801,ENSMUSG00000035392,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15215,cg16803993,-0.0000119,0.0000027,-4.422207972,0.0000135,loss,ns,-0.0000044,0.00000458,-0.95994804,0.337829475,neg,ns,-0.002829974,0.001343167,-2.106941982,0.035925764,neg,ns,1.444593993,0.000031,0.0000462,0.671702311,0.502273479,pos,ns,0.947591413,Gtpbp1,Gtpbp1_Exon,15,79706990,79707039,79707038,79707039,50,+,AGATGGGACTGAGTATGGGCTGAGTGAAGCTGACATGGAGGCCTCCTACG,"Exon (Gtpbp1-201/Gtpbp1, exon 3 of 12)",15,79690845,79721479,30635,1,Gtpbp1-201,16145,Gtpbp1-201;Gtpbp1-208;Gtpbp1-203;Gtpbp1-206;Gtpbp1-209;Gtpbp1-205,Gtpbp1;Gtpbp1;Gtpbp1;Gtpbp1;Gtpbp1;Gtpbp1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,4,14904,ENSMUSG00000042535,conserved gene but different region,15,79706983,79707142,160,*,160,13,0.58125,0.987654321,0.08125,4.46E-09,CpGisland,TRUE,U10,Tr-S
23947,cg27568825,-0.00000157,0.00000189,-0.829206152,0.407625786,loss,ns,0.00000309,0.00000322,0.95986477,0.33787132,pos,ns,0.000612176,0.000942608,0.649449524,0.516528764,pos,ns,0.286905489,-0.0000242,0.0000324,-0.745459619,0.456558748,neg,ns,0.944096904,Gm9240,Gm9240_Intron,7,121259763,121259812,121259811,121259812,50,+,TGCGCTACATTAAGGGACCCTCCTTTCCATAATGGATGTGTGGTTGAACG,"Intron (Gm45079-201/Gm45079-201, intron 1 of 1)",7,121223253,121223994,742,2,Gm9240-201,-35769,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,4,668556,NA,mapped to different genes,7,121259531,121259891,361,*,361,19,0.540166205,0.735628486,0.052631579,9.81E-10,CpGisland,TRUE,U15,NS
4487,cg04799897,0.0000146,0.00000703,2.076699533,0.038652777,gain,ns,0.0000115,0.0000119,0.959846914,0.337880294,pos,ns,0.00412777,0.003500104,1.179327661,0.239172023,pos,ns,0.621289622,-0.0000614,0.000120368,-0.509757645,0.61058397,neg,ns,0.810383752,Ryr1,Ryr1_Exon,7,29076818,29076867,29076866,29076867,50,+,TTCTCCAGCAGGTAGCTCAGGTGGTCAAACATGGAGCGCTGGTTCTGCCG,"Exon (Gm26604-201/Gm26604-201, exon 2 of 4)",7,29003344,29125015,121672,2,Ryr1-208,48148,Ryr1-208;Ryr1-201;Ryr1-202;Ryr1-203,Ryr1;Ryr1;Ryr1;Ryr1,0;0;0;-4741,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,20190,ENSMUSG00000030592,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9910,cg27313903,-0.0000121,0.00000463,-2.619190093,0.009247266,loss,ns,-0.00000756,0.00000787,-0.959756247,0.337925861,neg,ns,-0.003862076,0.002306751,-1.67424957,0.095090108,neg,ns,1.021864657,-0.000110313,0.0000793,-1.390575262,0.165351708,neg,ns,0.897057023,Gm46574,Gm46574_Intergenic_upstream,17,51536821,51536870,51536821,51536822,50,+,CGCAGCTTTAATTACTCATGCTGCTGGTTAAAATATTAATGGGGCACAGA,Distal Intergenic,17,51484292,51484721,430,2,Gm46574-201,-52100,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,19,108168316,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14174,cg14328037,0.0000559,0.00000555,10.083256,7.26E-21,gain,yes,-0.00000904,0.00000942,-0.959703215,0.337952515,neg,ns,0.008471693,0.002760752,3.06861833,0.002340438,pos,ns,2.630702795,-0.000258854,0.0000949,-2.726442646,0.006766418,neg,ns,0.119367135,Gm28230,Gm28230_Intron,2,74732828,74732877,74732828,74732829,50,-,CGAGGAAGATGATAAGAATAGATTTCTACAAGTCCCGACCACGTGATTGG,"Intron (Hoxd3-203/Hoxd3, intron 1 of 2)",2,74726728,74747918,21191,1,Gm28230-201,6100,Gm28230-201;Hoxd3-203;Hoxd3-205;Hoxd3-202;Hoxd4-203;Hoxd4-201;Hoxd4-202,Gm28230;Hoxd3;Hoxd3;Hoxd3;Hoxd4;Hoxd4;Hoxd4,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,23,,NA,mapped to different genes,2,74732626,74733055,430,*,430,35,0.590697674,0.938923202,0.081395349,1.14E-23,CpGisland,TRUE,U13,Hc-P
14849,cg04867509,-0.00000136,0.00000113,-1.204378895,0.229361891,loss,ns,-0.00000184,0.00000192,-0.959551595,0.338028729,neg,ns,0.000444435,0.000563051,0.789332343,0.430521075,pos,ns,0.366005584,-0.00000929,0.0000194,-0.479852092,0.631670952,neg,ns,0.028882309,Phf12,Phf12_Exon,11,77983999,77984048,77984047,77984048,50,+,TTTGTATGTGTGTGCAGCAAATCCAAGCTCTGCTGGCTCCCCCCAAGACG,"Exon (Phf12-202/Phf12, exon 2 of 11)",11,77982754,78026214,43461,1,Phf12-202,1245,Phf12-202;Phf12-201;Sez6-202;Sez6-207;Sez6-201;Sez6-208,Phf12;Phf12;Sez6;Sez6;Sez6;Sez6,0;0;0;0;0;30146,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,27,268448,ENSMUSG00000037791,conserved gene but different region,11,77984047,77984178,132,*,132,11,0.636363636,0.840277778,0.083333333,0.000000075,CpGisland,TRUE,U1,Pr-A
4319,cg14651844,-0.000000315,0.00000172,-0.182622797,0.855213367,loss,ns,0.00000281,0.00000293,0.959334805,0.33813772,pos,ns,0.000600486,0.000858244,0.699668251,0.484659188,pos,ns,0.31456355,-0.0000239,0.0000295,-0.809908191,0.418614192,neg,ns,0.950035498,Med29,Med29_Exon,7,28390822,28390871,28390870,28390871,50,-,TCCAGCTGGTCACAGAGTGCATAGAACTCTTCCAGGCACTTGTCAAAGCG,"Exon (Med29-201/Med29, exon 3 of 4)",7,28386146,28392708,6563,2,Med29-201,1837,Med29-201;Paf1-201;Paf1-206;Paf1-202;Paf1-204;Paf1-203;Paf1-210;Paf1-209;Paf1-207,Med29;Paf1;Paf1;Paf1;Paf1;Paf1;Paf1;Paf1;Paf1,0;-2080;-2091;-2170;-2290;-2587;-3892;-4554;-4954,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,67224,ENSMUSG00000003444,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6974,cg20655014,-0.0000576,0.0000138,-4.165245433,0.0000404,loss,ns,0.0000225,0.0000235,0.959280445,0.338165053,pos,ns,-0.006402739,0.006881391,-0.930442675,0.352865923,neg,ns,0.452390281,0.000245142,0.00023665,1.035881991,0.301064565,pos,ns,0.621079769,Ofcc1,Ofcc1_Intron,13,40280720,40280769,40280768,40280769,50,-,TGATTAAAATAATTACAAATTGCACCCTGACAAGCAAGAGCAAAATTTCG,"Intron (Ofcc1-201/Ofcc1, intron 2 of 18)",13,40001882,40288011,286130,2,Ofcc1-201,7242,Ofcc1-201;Ofcc1-203;Ofcc1-202,Ofcc1;Ofcc1;Ofcc1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,8,218165,ENSMUSG00000047094,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16255,cg19302725,0.0000501,0.00000795,6.296926357,1.04E-09,gain,yes,0.000013,0.0000135,0.95926864,0.338170989,pos,ns,0.017987819,0.003957454,4.545300746,0.00000787,pos,ns,5.103846653,-0.000457628,0.000136097,-3.362523271,0.000869159,neg,ns,0.114829833,Bnc2,Bnc2_fiveUTR,4,84672548,84672597,84672596,84672597,50,-,TTTTTGAAAAGACGACACAGCATTGACTCGTGACATGGCAAGATGAAACG,5' UTR,4,84275095,84675034,399940,2,Bnc2-201,2437,Bnc2-201;Bnc2-202;Bnc2-214;Bnc2-215;Bnc2-206;Bnc2-211;Bnc2-217;Bnc2-207;Bnc2-203;Bnc2-209;Bnc2-204;Bnc2-210,Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,8,91,242509,ENSMUSG00000028487,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
23391,cg16973098,0.0000694,0.0000101,6.849794256,3.99E-11,gain,yes,-0.0000165,0.0000172,-0.959001584,0.33830529,neg,ns,-0.00639904,0.005044561,-1.268502961,0.205570128,neg,ns,0.687039993,0.0003217,0.000173482,1.854372375,0.064635443,pos,ns,0.225593703,Sox21,Sox21_Intergenic_downstream,14,118230584,118230633,118230584,118230585,50,-,CGGCCAGCTGGATCGGCTGAAAAAAAAACCTTGTGAAAAGAAACGCCTCA,Distal Intergenic,14,118233232,118237030,3799,2,Sox21-201,6446,Sox21-201,Sox21,6397,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,26,27,223227,ENSMUSG00000061517,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
18568,cg18064215,-0.00000831,0.00000522,-1.592353925,0.112324328,loss,ns,0.0000085,0.00000886,0.958923289,0.338344671,pos,ns,-0.00297005,0.00259588,-1.14413967,0.25344839,neg,ns,0.596110463,0.0000918,0.0000893,1.028403055,0.304562007,pos,ns,0.0928657,Hoxb6,Hoxb6_fiveUTR,11,96292523,96292572,96292571,96292572,50,-,TCCTTCAGGGCTCCAGCCTCTTGATATTTTTGTACTTCAGTATCAGCTCG,Promoter (<=1kb),11,96292476,96301569,9094,1,Hoxb6-202,47,Hoxb6-202;Hoxb7-201;Hoxb7-202,Hoxb6;Hoxb7;Hoxb7,0;0;3808,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,6,16,15414,ENSMUSG00000000690,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
11716,cg01622303,-0.00000782,0.00000247,-3.16947784,0.001679619,loss,ns,0.00000402,0.00000419,0.958579392,0.33851768,pos,ns,0.003077575,0.001228158,2.505847242,0.012728068,pos,ns,1.895237523,-0.0000257,0.0000422,-0.609348479,0.542739802,neg,ns,0.925831195,Fam204a,Fam204a_Intron,19,60204366,60204415,60204366,60204367,50,-,CGAACATGGTGCAGATTTGTTCATTCTTATCAGAACAAAGCCAGCGGCAG,"Intron (Fam204a-201/Fam204a, intron 6 of 7)",19,60198586,60226697,28112,2,Fam204a-201,22282,Fam204a-201;Fam204a-203;Fam204a-202;Fam204a-206;Fam204a-205;Fam204a-207,Fam204a;Fam204a;Fam204a;Fam204a;Fam204a;Fam204a,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,14,76539,ENSMUSG00000057858,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4288,cg11625245,0.0000121,0.00000398,3.041574155,0.002554467,gain,ns,-0.00000649,0.00000677,-0.958391105,0.338612428,neg,ns,0.001744243,0.001982562,0.879792434,0.379653259,pos,ns,0.420612868,-0.000127953,0.0000682,-1.876693719,0.061499271,neg,ns,0.168485022,Olfm1,Olfm1_Exon,2,28205979,28206028,28205979,28205980,50,+,CGTGCTGAGCACCATGGCCATGATCACTAACTGGATGTCCCAGACGCTGC,"Exon (Olfm1-203/Olfm1, exon 1 of 4)",2,28192992,28214425,21434,1,Olfm1-205,12987,Olfm1-205;Olfm1-204;Olfm1-202;Olfm1-203;Olfm1-201,Olfm1;Olfm1;Olfm1;Olfm1;Olfm1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,56177,ENSMUSG00000026833,conserved gene and region,2,28205337,28205980,644,*,644,91,0.73757764,1.051079704,0.141304348,1.39E-84,CpGisland,TRUE,U3,Pr-B
26071,cg02077300,-0.00000728,0.00000278,-2.614317719,0.009377246,loss,ns,0.00000453,0.00000473,0.958371708,0.33862219,pos,ns,-0.001113559,0.001385044,-0.803988629,0.422019631,neg,ns,0.374667347,-0.000054,0.0000476,-1.132727161,0.258204183,neg,ns,0.954312951,Gm2505,Gm2505_Intergenic_upstream,3,143655405,143655454,143655453,143655454,50,-,GGCAGGAATTCTACAATCACTTATTAAATTGGCCTCCTAAATCCTGAGCG,Distal Intergenic,3,143872995,143873819,825,1,Gm2505-201,-217590,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,37,100039938,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11180,cg26615080,0.0000389,0.00000413,9.436824012,9.51E-19,gain,yes,-0.00000672,0.00000701,-0.95829503,0.338660781,neg,ns,0.001138005,0.002053066,0.554295329,0.579776388,pos,ns,0.236739476,0.000168196,0.0000706,2.382215948,0.017811597,pos,ns,0.921857729,Satb2,Satb2_Exon,1,56845638,56845687,56845686,56845687,50,+,CCTGTTGGATCTCGTCATAAATGGCAGCTGTGATGTTGATGTTGGCGCCG,"Exon (Satb2-201/Satb2, exon 8 of 10)",1,56793981,56972502,178522,2,Satb2-201,126815,Satb2-201;Satb2-202;Satb2-205,Satb2;Satb2;Satb2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,33,212712,ENSMUSG00000038331,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4759,cg23585860,0.0000137,0.0000029,4.72999325,0.00000342,gain,ns,-0.00000472,0.00000493,-0.958210869,0.338703141,neg,ns,-0.005343066,0.001443784,-3.70073742,0.000254317,neg,ns,3.59462516,0.0000147,0.0000497,0.295476991,0.767827336,pos,ns,0.03055134,Ier5l,Ier5l_threeUTR,2,30472784,30472833,30472832,30472833,50,+,GGGGTCCCTAGAAGGCGACAATGGCTCGAGTCCAGGCGCCGAGGCTGGCG,3' UTR,2,30471537,30474219,2683,2,Ier5l-201,1386,Ier5l-201,Ier5l,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,13,72500,ENSMUSG00000089762,conserved gene but different region,2,30472675,30473617,943,*,943,114,0.735949099,0.895782816,0.120890774,9.25E-97,CpGisland,TRUE,U3,Pr-B
20814,cg25802459,-0.000000448,0.00000106,-0.423373931,0.672316037,loss,ns,-0.00000172,0.0000018,-0.958049468,0.338784388,neg,ns,-0.000611572,0.000526074,-1.162521529,0.245917845,neg,ns,0.609209956,0.00000525,0.0000181,0.290350891,0.771741942,pos,ns,0.977182243,Zdhhc1,Zdhhc1_Exon,8,105476640,105476689,105476640,105476641,50,-,CGCATGGGGTTGACAAAGAACTCCACGAAGACATATGTGGCCACCAGCAC,"Exon (Zdhhc1-203/Zdhhc1, exon 8 of 14)",8,105472423,105496870,24448,2,Zdhhc1-203,20181,Zdhhc1-203;Zdhhc1-202;Zdhhc1-201,Zdhhc1;Zdhhc1;Zdhhc1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,70796,ENSMUSG00000039199,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18411,cg20004549,0.0000209,0.00000414,5.05002386,0.000000755,gain,yes,-0.00000674,0.00000703,-0.958002179,0.338808194,neg,ns,0.006053737,0.002060277,2.938312671,0.003547663,pos,ns,2.450057698,-0.000025,0.0000709,-0.352851104,0.724439865,neg,ns,0.037378789,Cradd,Cradd_Intron,10,95265058,95265107,95265058,95265059,50,-,CGGGTTCCCTAGAAACATTAAATTAACACAAGGGATCTGGAAACAAAACA,"Intron (Cradd-205/Cradd, intron 1 of 1)",10,95174746,95322965,148220,2,Cradd-205,57858,Cradd-205;Cradd-201;Cradd-202;Cradd-204,Cradd;Cradd;Cradd;Cradd,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,12905,ENSMUSG00000045867,conserved gene and region,10,95264896,95265059,164,*,164,14,0.646341463,0.82,0.085365854,4.89E-10,CpGisland,TRUE,U1,Pr-A
302,cg22213242,-0.0000441,0.00000835,-5.275537009,0.000000249,loss,yes,0.0000136,0.0000142,0.957836465,0.338891629,pos,ns,0.018228409,0.004157402,4.384567662,0.0000159,pos,ns,4.797587316,-0.000811124,0.000142973,-5.673276157,3.21E-08,neg,yes,0.330741168,Cd248,Cd248_Exon,19,5069050,5069099,5069050,5069051,50,+,CGCTGTGTGGACACAGATGAGTGCCAGATTGCCGGTGTGTGCCAGCAGAT,Promoter (<=1kb),19,5068078,5070682,2605,1,Cd248-201,972,Cd248-201;Tmem151a-204;Tmem151a-203;Tmem151a-205,Cd248;Tmem151a;Tmem151a;Tmem151a,0;3033;16388;16388,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,70445,ENSMUSG00000056481,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
2217,cg01137610,-0.00000516,0.0000022,-2.34824695,0.019490101,loss,ns,0.00000358,0.00000374,0.957733197,0.338943629,pos,ns,-0.000472291,0.001094481,-0.431520661,0.666389778,neg,ns,0.176271673,0.0000128,0.0000376,0.341203018,0.733181897,pos,ns,0.947573858,Gm37317,Gm37317_Intergenic_upstream,3,18640388,18640437,18640388,18640389,50,-,CGCTGTGTTCTGCCCTACATTTGGACTATCGCAAGTGAGGCAAACTTTTC,Distal Intergenic,3,18609808,18610831,1024,2,Gm37317-201,-29606,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,10,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6954,cg06223742,0.00000174,0.0000025,0.694594691,0.48782958,gain,ns,0.00000407,0.00000425,0.957458294,0.339082082,pos,ns,0.004516406,0.001245929,3.624929482,0.000337735,pos,ns,3.471424533,-0.000200849,0.0000428,-4.68755209,0.00000415,neg,ns,0.930251754,Ofcc1,Ofcc1_Intron,13,40032227,40032276,40032275,40032276,50,+,TTTTCTTTTACACTCCATTATGGAAAAATCAATATGGGTGCTATTCATCG,"Intron (Ofcc1-201/Ofcc1, intron 16 of 18)",13,40001882,40288011,286130,2,Ofcc1-201,255735,Ofcc1-201;Ofcc1-203,Ofcc1;Ofcc1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,8,218165,ENSMUSG00000047094,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10899,cg19080592,0.0000614,0.00000836,7.346867363,1.81E-12,gain,yes,-0.0000136,0.0000142,-0.95738555,0.339118725,neg,ns,0.000642103,0.004159609,0.154366227,0.877421431,pos,ns,0.056791762,0.000107282,0.000143049,0.749972233,0.453840223,pos,ns,0.770068044,Ltb4r2,Ltb4r2_Exon,14,55762228,55762277,55762228,55762229,50,-,CGCTCAGCATGTACGCCAGCGTGCTGCTCACCGGCCTGCTCAGCCTGCAG,Promoter (<=1kb),14,55761428,55763229,1802,1,Ltb4r2-201,800,Cideb-201;Cideb-202;Ltb4r1-201;Ltb4r2-201;Ltb4r2-202,Cideb;Cideb;Ltb4r1;Ltb4r2;Ltb4r2,-3770;-3849;-3685;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,57260,ENSMUSG00000040432,mapped to different genes,14,55762210,55762906,697,*,697,68,0.695839311,0.80597218,0.097560976,5.73E-51,CpGisland,TRUE,NA,NRS
13010,cg25801086,-0.00000466,0.00000538,-0.866414199,0.386933141,loss,ns,-0.00000875,0.00000914,-0.957341853,0.339140737,neg,ns,0.001194082,0.002678003,0.445885113,0.655991489,pos,ns,0.183101795,-0.0000804,0.0000921,-0.873307725,0.383171342,neg,ns,0.905127415,Gm4842,Gm4842_Intergenic_upstream,18,69125220,69125269,69125268,69125269,50,-,CCACTGGCAATTACTGTTCTATGCTGTTTTGTAATGCAGAAGGGCCAACG,Distal Intergenic,18,69256288,69257122,835,1,Gm4842-201,-131068,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,10,225681,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25307,cg06406458,-0.000000359,0.000000265,-1.352073041,0.177337528,loss,ns,0.000000431,0.000000451,0.957322573,0.339150449,pos,ns,-0.0000856,0.000132046,-0.648296963,0.5172728,neg,ns,0.286280358,0.0000019,0.00000454,0.418732498,0.675701604,pos,ns,0.992846099,Dock1,Dock1_Intron,7,134756817,134756866,134756817,134756818,50,-,CGCGTTGGACGACGCCATTCGACACAAGCCGCTGAACATGTCATCCCGTT,"Intron (Dock1-205/Dock1, intron 11 of 26)",7,134670654,134876943,206290,1,Dock1-205,86163,Dock1-205;Dock1-206;Dock1-201;Dock1-204;Dock1-203,Dock1;Dock1;Dock1;Dock1;Dock1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,5,330662,ENSMUSG00000058325,conserved gene but different region,7,134756817,134756864,48,*,48,7,0.604166667,1.647058824,0.145833333,0.000000957,CpGisland,TRUE,U10,Tr-S
1702,cg21989877,-0.0000257,0.0000106,-2.422199264,0.016000057,loss,ns,0.0000173,0.000018,0.95730112,0.339161257,pos,ns,-0.003687647,0.005281319,-0.698243665,0.485548256,neg,ns,0.313767602,-0.000175246,0.000181624,-0.964883014,0.335355499,neg,ns,0.682857641,Msc,Msc_Intergenic_downstream,1,14627345,14627394,14627345,14627346,50,+,CGTGGGTGTAAAATGAAGTAATTTATGTGTCATAGCTAATTAAGATTACA,Distal Intergenic,1,14753935,14754665,731,2,Msc-202,127271,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,17681,ENSMUSG00000025930,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4674,cg26891284,0.00000669,0.00000226,2.958081334,0.00333378,gain,ns,-0.00000368,0.00000384,-0.957299855,0.339161894,neg,ns,-0.000844599,0.001124992,-0.750759663,0.453366794,neg,ns,0.343550292,0.0000333,0.0000387,0.860089483,0.390404381,pos,ns,0.935981855,Cacna1d,Cacna1d_Exon,14,30089830,30089879,30089830,30089831,50,-,CGCTGAGGGCCACGTCTATAATGCTGCCGATTACGATGAGGGAGTCAAAC,"Exon (Cacna1d-202/Cacna1d, exon 30 of 47)",14,30039941,30491453,451513,2,Cacna1d-202,401574,Cacna1d-202;Cacna1d-201;Cacna1d-208;Cacna1d-209;Cacna1d-214;Cacna1d-204;Cacna1d-207;Cacna1d-218;Cacna1d-216;Cacna1d-217;Cacna1d-210;Cacna1d-219,Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,26,12289,ENSMUSG00000015968,conserved gene and region,14,30089796,30089891,96,*,96,9,0.572916667,1.145888594,0.09375,0.000000648,CpGisland,TRUE,U11,Tr-P
20460,cg09909845,0.0000533,0.00000481,11.07570844,3.04E-24,gain,yes,-0.00000783,0.00000818,-0.957289359,0.339167182,neg,ns,0.006168681,0.00239536,2.575262324,0.010479727,pos,ns,1.979650044,0.0000991,0.0000824,1.202852455,0.229951292,pos,ns,0.080334414,Hoxc4,Hoxc4_Intergenic_downstream,15,103061664,103061713,103061664,103061665,50,-,CGCCAGCCTCCGCAGCCGCCTTTGTACACGTGATTTATGACTTCAATCTT,Distal Intergenic,15,103034395,103036852,2458,1,Hoxc4-201,27318,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,32,91,15423,ENSMUSG00000075394,mapped to different genes,15,103061537,103061809,273,*,273,19,0.586080586,0.8125,0.06959707,7.69E-12,CpGisland,TRUE,U13,Hc-P
12393,cg10233638,0.0000499,0.0000129,3.866118025,0.000134741,gain,ns,-0.000021,0.0000219,-0.957136474,0.33924421,neg,ns,0.026778347,0.00641993,4.171127358,0.0000394,pos,ns,4.404589566,-0.000613272,0.000220781,-2.777741128,0.005807351,neg,ns,0.32520825,Fign,Fign_Intron,2,64095359,64095408,64095407,64095408,50,-,CAATCTGCTCTGAATATATATTACAGCTTTAACATCACAGAGGGAAATCG,"Intron (Fign-203/Fign, intron 2 of 2)",2,63971507,64098012,126506,2,Fign-203,2604,Fign-203;Fign-201;Fign-202;Fign-204,Fign;Fign;Fign;Fign,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,84,60344,ENSMUSG00000075324,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12928,cg11729098,-0.0000103,0.00000622,-1.664319805,0.097058941,loss,ns,0.0000101,0.0000106,0.957114987,0.339255036,pos,ns,0.003933187,0.003094736,1.270928055,0.204707111,pos,ns,0.68886707,-0.000268223,0.000106428,-2.520233344,0.012229655,neg,ns,0.922547578,Erbb4,Erbb4_Exon,1,68290272,68290321,68290272,68290273,50,-,CGTCCATGGGTAGTAAATGCAGTCATGACTAGTGGGACCGTTACACCTGC,"Exon (Erbb4-201/Erbb4, exon 16 of 28)",1,68032186,69107756,1075571,2,Erbb4-201,817435,Erbb4-201;Erbb4-202;Erbb4-205;Erbb4-204;Gm15670-201,Erbb4;Erbb4;Erbb4;Erbb4;Gm15670,0;0;0;0;3405,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,13,13869,ENSMUSG00000062209,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13466,cg13818368,-0.00000225,0.000000797,-2.822125526,0.005078821,loss,ns,0.0000013,0.00000135,0.957081738,0.33927179,pos,ns,0.001324549,0.000396671,3.339165124,0.000942839,pos,ns,3.025562512,-0.0000401,0.0000136,-2.937030149,0.003561963,neg,ns,0.024701246,Camta2,Camta2_threeUTR,11,70669480,70669529,70669528,70669529,50,+,TTAATGGCAATTCGTATAAACCAAGCCCATGCACAAGTAGAAAGTGCCCG,3' UTR,11,70669463,70686389,16927,2,Camta2-208,16860,Camta2-208;Camta2-204;Camta2-206;Camta2-201;Camta2-202;Camta2-203;Camta2-205;Camta2-207;Spag7-201;Spag7-204;Spag7-202;Spag7-203,Camta2;Camta2;Camta2;Camta2;Camta2;Camta2;Camta2;Camta2;Spag7;Spag7;Spag7;Spag7,0;0;0;0;0;0;0;0;-64;-262;-201;-190,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,4,216874,ENSMUSG00000040712,conserved gene and region,11,70669276,70669586,311,*,311,31,0.627009646,1.02021164,0.099678457,7.63E-24,CpGisland,TRUE,U1,Pr-A
404,cg12743193,-0.00000737,0.00000171,-4.32054268,0.000021,loss,ns,0.00000277,0.0000029,0.957077918,0.339273715,pos,ns,0.001170162,0.000848987,1.378302875,0.169103721,pos,ns,0.771846836,-0.0000493,0.0000292,-1.690211206,0.091992793,neg,ns,0.066432581,Zdhhc14,Zdhhc14_Exon,17,5493464,5493513,5493464,5493465,50,+,CGGGCCCATGAAAGACTGCGAGTACAGCCAGATCAGCACCCACAGCTCCT,Promoter (<=1kb),17,5492557,5753811,261255,1,Zdhhc14-201,907,Zdhhc14-201,Zdhhc14,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,8,224454,ENSMUSG00000034265,conserved gene and region,17,5493294,5493483,190,*,190,30,0.784210526,1.047794118,0.157894737,7.08E-30,CpGisland,TRUE,U1,Pr-A
8705,cg10374774,0.0000636,0.0000091,6.993322179,1.66E-11,gain,yes,-0.0000148,0.0000155,-0.95705769,0.339283907,neg,ns,0.004505589,0.004527234,0.995219022,0.320405937,pos,ns,0.494299445,-0.000183644,0.000155691,-1.179540426,0.239087471,neg,ns,0.069916996,Gm31907,Gm31907_fiveUTR,18,45560124,45560173,45560124,45560125,50,-,CGCGAGAGCAACCCCTTCACCGAAATAGCCATGAGCAGCTGCAGGTACAA,Promoter (<=1kb),18,45501590,45560130,58541,2,Gm31907-202,0,Gm31907-202;Kcnn2-205;Kcnn2-201;Kcnn2-207;Kcnn2-206;Kcnn2-202;Kcnn2-208;Kcnn2-203,Gm31907;Kcnn2;Kcnn2;Kcnn2;Kcnn2;Kcnn2;Kcnn2;Kcnn2,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,15,15,102634286,NA,mapped to different genes,18,45559636,45560643,1008,*,1008,101,0.691468254,0.851522248,0.100198413,1.25E-76,CpGisland,TRUE,U3,Pr-B
18500,cg22023191,-0.00000274,0.00000149,-1.839963093,0.066729552,loss,ns,0.00000242,0.00000253,0.957057618,0.339283944,pos,ns,0.00106863,0.000741275,1.44160956,0.150421959,pos,ns,0.822688759,-0.0000153,0.0000255,-0.600814549,0.548402533,neg,ns,0.964645005,Cnot6l,Cnot6l_threeUTR,5,96128951,96129000,96128999,96129000,50,-,CCTAGAGTTTGTAGCTGGAAGAGCCGACCAAGTTCATAAGGCAAAACCCG,3' UTR,5,96070333,96161990,91658,2,Cnot6l-210,32990,Cnot6l-210;Cnot6l-201;Cnot6l-202;Cnot6l-203;Cnot6l-205;Cnot6l-204;Cnot6l-207;Cnot6l-206;Cnot6l-209,Cnot6l;Cnot6l;Cnot6l;Cnot6l;Cnot6l;Cnot6l;Cnot6l;Cnot6l;Cnot6l,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,11,13,231464,ENSMUSG00000034724,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26443,cg07991288,0.0000268,0.00000558,4.812147476,0.00000234,gain,ns,-0.00000907,0.00000948,-0.957046711,0.33928944,neg,ns,0.0060087,0.002776985,2.16374914,0.031247216,pos,ns,1.505188671,-0.000162874,0.0000955,-1.705476839,0.089107232,neg,ns,0.046732939,Foxa2,Foxa2_Intergenic_downstream,2,148040276,148040325,148040324,148040325,50,+,AAGATTTCACTGCCCGCTAGTTTAAAAATGAATATTTTACCAAGATATCG,Downstream (2-3kb),2,148044240,148045464,1225,2,Foxa2-203,5139,Foxa2-202;Foxa2-201;Foxa2-204;Foxa2-203,Foxa2;Foxa2;Foxa2;Foxa2,0;0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,9,25,15376,ENSMUSG00000037025,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
3832,cg14516881,0.000098,0.0000189,5.175216921,0.00000041,gain,yes,-0.0000308,0.0000322,-0.956892525,0.339367141,neg,ns,0.070030498,0.009426509,7.429101911,1.07E-12,pos,yes,11.97091347,-0.001996271,0.000324177,-6.157967119,2.28E-09,neg,yes,0.543998479,Zmiz1,Zmiz1_Intron,14,25557517,25557566,25557565,25557566,50,-,GTAATTAATATGCAACTGCCACTTAAGCTAAAACACTGCTTATAGAGACG,"Intron (Zmiz1-208/Zmiz1, intron 3 of 23)",14,25459224,25666743,207520,1,Zmiz1-208,98293,Zmiz1-208;Zmiz1-201;Zmiz1-202;Zmiz1-205,Zmiz1;Zmiz1;Zmiz1;Zmiz1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,15,328365,ENSMUSG00000007817,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12034,cg16692823,0.00000511,0.00000227,2.251592246,0.025047968,gain,ns,-0.00000369,0.00000385,-0.956846253,0.339390461,neg,ns,0.000664592,0.001128666,0.588829194,0.556404664,pos,ns,0.254609238,0.0000129,0.0000388,0.331535657,0.740463928,pos,ns,0.938603517,Dhx36,Dhx36_Exon,3,62472755,62472804,62472755,62472756,50,-,CGAATTTTAGCAACTTTGGGATATAAACCAGCACAGATGACAGCTTTAAT,"Exon (Dhx36-201/Dhx36, exon 22 of 25)",3,62468013,62507004,38992,2,Dhx36-201,34200,Dhx36-201;Dhx36-202,Dhx36;Dhx36,0;-168,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,72162,ENSMUSG00000027770,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10315,cg14575244,0.0000103,0.00000224,4.62013996,0.00000563,gain,ns,-0.00000364,0.00000381,-0.956769695,0.339429048,neg,ns,0.000849413,0.001114789,0.761949587,0.446669395,pos,ns,0.350013803,-0.0000513,0.0000383,-1.339040154,0.181538619,neg,ns,0.938274747,Anapc4,Anapc4_threeUTR,5,52861224,52861273,52861272,52861273,50,+,TGTTTTTGTTTGAAACCAGAAAGTCCTTTGCTGTTTCCTTATTATCCTCG,3' UTR,5,52834012,52867797,33786,1,Anapc4-201,27212,Anapc4-201;Anapc4-207;Anapc4-206;Anapc4-212;Anapc4-210;Anapc4-203;Anapc4-208;Anapc4-204,Anapc4;Anapc4;Anapc4;Anapc4;Anapc4;Anapc4;Anapc4;Anapc4,0;0;11081;5877;0;0;0;-4340,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,1,52206,ENSMUSG00000029176,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15057,cg02352577,-0.0000352,0.0000134,-2.630286217,0.008957265,loss,ns,0.0000218,0.0000227,0.956767726,0.33943004,pos,ns,-0.003235368,0.006664888,-0.485434726,0.627710898,neg,ns,0.202240331,-0.000223286,0.000229205,-0.974176593,0.330728405,neg,ns,0.72576008,Gm8345,Gm8345_Intergenic_downstream,13,78678635,78678684,78678635,78678636,50,-,CGACCAAGGGTAAACCAAGTGTAGGCTGGCATTGTATCAAACTAGCTTTA,Distal Intergenic,13,78953088,78954792,1705,2,Gm8345-201,276157,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,13,666883,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4922,cg09079447,0.0000654,0.0000103,6.368307813,6.89E-10,gain,yes,0.0000167,0.0000174,0.956746743,0.339440617,pos,ns,0.013514882,0.005109394,2.645104915,0.008582707,pos,ns,2.066375723,-0.000195298,0.000175712,-1.111466123,0.267229027,neg,ns,0.545945447,Gm11922,Gm11922_Intergenic_upstream,4,31328961,31329010,31329009,31329010,50,-,AATTAAAACATTCTGTAGCCTGACAAAAAGCTGTGTGTTTTTAGCAACCG,Distal Intergenic,4,31380472,31380946,475,1,Gm11922-201,-51511,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,100504194,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7083,cg16443626,0.0000038,0.0000109,0.347821458,0.728210326,gain,ns,0.0000178,0.0000186,0.956707705,0.339460294,pos,ns,-0.006289195,0.005438347,-1.156453459,0.248386139,neg,ns,0.604872643,0.000185173,0.000187024,0.990099811,0.322897502,pos,ns,0.845489893,Bsx,Bsx_Intergenic_upstream,9,40851902,40851951,40851950,40851951,50,+,ACATTTAGACTCACACTTTGCATTTCTAATTAACTTGAGGAGTGACTTCG,Distal Intergenic,9,40874127,40880057,5931,1,Bsx-201,-22176,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,3,244813,ENSMUSG00000054360,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5828,cg16889221,-0.000000121,0.00000285,-0.042329616,0.966263187,loss,ns,0.00000463,0.00000484,0.95665069,0.339489034,pos,ns,0.004055201,0.001418945,2.857897644,0.004553199,pos,ns,2.341683373,-0.00011238,0.0000488,-2.302999608,0.021940677,neg,ns,0.938634263,Pepd,Pepd_Promoter,7,34908796,34908845,34908796,34908797,50,-,CGATAATTGGATGTATTTATAAGTCTCTCTGGAAGAAAACAGCTTGTGAT,Promoter (3-4kb),7,34912379,35044708,132330,1,Pepd-201,-3583,Pepd-201,Pepd,-3534,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,1,18624,ENSMUSG00000063931,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6878,cg14361911,-0.00000682,0.00000206,-3.307422315,0.001052311,loss,ns,0.00000335,0.0000035,0.956475641,0.339577283,pos,ns,-0.00000999,0.001025824,-0.009743077,0.992232539,neg,ns,0.003386535,-0.0000338,0.0000353,-0.958273193,0.338671772,neg,ns,0.052431847,Kdm7a,Kdm7a_Intron,6,39205459,39205508,39205459,39205460,50,-,CGCCGGAGTCAAGAGGCTGTGGCGCCGCCCTTTATTAGCCTCACACTTTG,"Intron (Kdm7a-201/Kdm7a, intron 1 of 19)",6,39136623,39206789,70167,2,Kdm7a-201,1281,Kdm7a-201,Kdm7a,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,8,338523,ENSMUSG00000042599,conserved gene and region,6,39205446,39207371,1926,*,1926,267,0.729491173,1.042169774,0.138629284,2.72E-244,CpGisland,TRUE,U1,Pr-A
14413,cg25476805,-0.0000798,0.0000133,-6.017734547,4.99E-09,loss,yes,-0.0000215,0.0000225,-0.956472375,0.33957893,neg,ns,0.026424118,0.006597728,4.005033204,0.0000777,pos,ns,4.109703172,-0.000884374,0.000226895,-3.897719032,0.000119037,neg,ns,0.227318731,Prpf8,Prpf8_Exon,11,75487720,75487769,75487768,75487769,50,+,GTCAGGAAGATCATTCGAGACCATGGAGACATGACCAACAGGAAGTTCCG,Promoter (<=1kb),11,75486816,75509447,22632,1,Prpf8-201,904,Prpf8-201;Prpf8-202;Prpf8-203;Prpf8-204,Prpf8;Prpf8;Prpf8;Prpf8,0;0;0;-4477,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,192159,ENSMUSG00000020850,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U4,Pr-F
15946,cg23644617,-0.00000514,0.00000243,-2.117981132,0.034972266,loss,ns,0.00000395,0.00000413,0.956388099,0.339621422,pos,ns,0.001386943,0.001208615,1.147548095,0.252040001,pos,ns,0.598530527,-0.000079,0.0000416,-1.900741298,0.058263283,neg,ns,0.940010496,Adgrl1,Adgrl1_threeUTR,8,83941804,83941853,83941804,83941805,50,+,CGATATGCCAAACCAATTTTGGGTCGAGTGCATTTAACGAGAACAAAACA,3' UTR,8,83900105,83941954,41850,1,Adgrl1-207,41699,Adgrl1-207;Adgrl1-202;Adgrl1-201;Adgrl1-205;Adgrl1-210;Adgrl1-204;Adgrl1-209;Adgrl1-208;Adgrl1-203,Adgrl1;Adgrl1;Adgrl1;Adgrl1;Adgrl1;Adgrl1;Adgrl1;Adgrl1;Adgrl1,0;0;0;0;0;0;7227;5649;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,4,330814,ENSMUSG00000013033,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25377,cg08540100,0.000011,0.00000294,3.751190904,0.000210011,gain,ns,0.00000477,0.00000499,0.956385976,0.339622493,pos,ns,0.004113175,0.001460888,2.815530743,0.005181537,pos,ns,2.285541425,-0.0000703,0.0000502,-1.400219794,0.162447548,neg,ns,0.033142937,Id3,Id3_Promoter,4,136140506,136140555,136140506,136140507,50,-,CGCATCCCTGTGTGAACGCATGACGTCCCACCCTGGCGCCAGGCTGTCTG,Promoter (2-3kb),4,136143497,136145392,1896,1,Id3-201,-2991,Id3-201;Id3-203;Id3-202,Id3;Id3;Id3,-2942;-3309;-4419,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,9,9,15903,ENSMUSG00000007872,conserved gene and region,4,136140358,136140543,186,*,186,17,0.661290323,0.836065574,0.09139785,1.32E-12,CpGisland,TRUE,NA,NRS
17003,cg22354659,0.0000326,0.00000758,4.297535366,0.0000232,gain,ns,-0.0000123,0.0000129,-0.956209657,0.339711405,neg,ns,0.008539293,0.003774043,2.262638267,0.02434976,pos,ns,1.613505318,-0.00016987,0.000129789,-1.308816104,0.191566059,neg,ns,0.695778518,Zfp423,Zfp423_Intron,8,87834125,87834174,87834173,87834174,50,-,GACGTCAGGGGGTAATTGGGTGTCTGAGAGAAATTGCCAGCGGCTGGCCG,"Intron (Zfp423-202/Zfp423, intron 3 of 7)",8,87661810,87959595,297786,2,Zfp423-202,125421,Zfp423-202;Zfp423-201;Zfp423-207;Zfp423-205;Zfp423-204,Zfp423;Zfp423;Zfp423;Zfp423;Zfp423,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,42,53,94187,ENSMUSG00000045333,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4247,cg14158769,-0.000132012,0.0000151,-8.755293818,1.34E-16,loss,yes,0.0000245,0.0000256,0.956178945,0.339726893,pos,ns,0.043694503,0.007504441,5.822485744,1.45E-08,pos,ns,7.839082802,-0.001477172,0.000258077,-5.723762356,2.46E-08,neg,yes,0.759735511,Grm8,Grm8_Exon,6,27936665,27936714,27936665,27936666,50,-,CGTCATGATGTTGCGTCACCACGTGATGACGCTGTGCCATCACAACACAT,"Exon (Grm8-206/Grm8, exon 6 of 6)",6,27275119,28134545,859427,2,Grm8-202,197831,Grm8-202;Grm8-203;Grm8-201;Grm8-204;Grm8-206,Grm8;Grm8;Grm8;Grm8;Grm8,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,14823,ENSMUSG00000024211,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13636,cg19303187,0.0000261,0.00000787,3.32325949,0.000996295,gain,ns,0.0000128,0.0000134,0.956172973,0.339729905,pos,ns,0.008577535,0.003915168,2.190846847,0.029207107,pos,ns,1.534511457,0.000146077,0.000134642,1.08492435,0.278798158,pos,ns,0.215004928,Dlx2,Dlx2_Promoter,2,71548106,71548155,71548154,71548155,50,-,CCCCAAAAGAACAAAATAGTAATTAAAAGCCACAAAATTGTGCTAGTGCG,Promoter (1-2kb),2,71543408,71546754,3347,2,Dlx2-201,-1401,Dlx2-201;Dlx2-202,Dlx2;Dlx2,0;-2156,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,8,13392,ENSMUSG00000023391,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
5607,cg10721220,-0.0000492,0.0000162,-3.033507993,0.002621701,loss,ns,0.0000263,0.0000276,0.956122798,0.33975521,pos,ns,-0.020568746,0.008073022,-2.54783727,0.011321727,neg,ns,1.946087317,0.000575744,0.000277631,2.073777111,0.038925427,pos,ns,0.795824454,Gm8254,Gm8254_Intergenic_downstream,8,34320284,34320333,34320332,34320333,50,-,GAAATTCATATAATTACTACACACCATGACTTCCTCTAGAGTTGTATCCG,Distal Intergenic,8,34321853,34322824,972,2,Gm8254-201,2540,Gm8254-201,Gm8254,2491,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,666718,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9914,cg20687703,0.0000706,0.00000776,9.101448028,1.12E-17,gain,yes,-0.0000126,0.0000132,-0.956061235,0.33978626,neg,ns,0.008691715,0.003862483,2.250292003,0.02513129,pos,ns,1.599785211,-0.000109633,0.00013283,-0.8253574,0.409803396,neg,ns,0.077396512,Shc3,Shc3_fiveUTR,13,51567404,51567453,51567452,51567453,50,-,GAGTCATTCCTGAAGCGGTTATACTTGGTGCGTGGAAGCATGCCCCTCCG,5' UTR,13,51431041,51569487,138447,2,Shc3-203,2034,Shc3-201;Shc3-203;Shc3-204;Shc3-202,Shc3;Shc3;Shc3;Shc3,-320;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,4,20418,NA,mapped to different genes,13,51567270,51567855,586,*,586,59,0.660409556,0.923697569,0.100682594,3.57E-45,CpGisland,TRUE,U3,Pr-B
24526,cg25837793,-0.0000014,0.00000209,-0.669656456,0.503575282,loss,ns,-0.0000034,0.00000356,-0.956047785,0.339793044,neg,ns,-0.002406587,0.001042551,-2.308364601,0.021636684,neg,ns,1.664809308,0.0000346,0.0000359,0.964412202,0.335591017,pos,ns,0.956392268,Camk2d,Camk2d_threeUTR,3,126797705,126797754,126797705,126797706,50,+,CGTTCTACTGTTGCTTCCATGATGCACAGACAGGAGACTGTAGACTGCTT,3' UTR,3,126596951,126844913,247963,1,Camk2d-206,200754,Camk2d-206;Camk2d-203;Camk2d-202;Camk2d-216;Camk2d-226;Camk2d-210;Camk2d-219;Camk2d-213;Camk2d-209;Camk2d-204;Camk2d-228;Camk2d-221;Camk2d-207;Camk2d-205;Camk2d-222;Camk2d-214;Camk2d-223;Camk2d-224;Camk2d-217;Camk2d-218,Camk2d;Camk2d;Camk2d;Camk2d;Camk2d;Camk2d;Camk2d;Camk2d;Camk2d;Camk2d;Camk2d;Camk2d;Camk2d;Camk2d;Camk2d;Camk2d;Camk2d;Camk2d;Camk2d;Camk2d,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,4,108058,ENSMUSG00000053819,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23297,cg06105583,-0.00000374,0.00000155,-2.417065235,0.016223172,loss,ns,0.00000251,0.00000263,0.955940831,0.339846993,pos,ns,0.000296894,0.000770727,0.385213181,0.700343652,pos,ns,0.154688804,0.0000145,0.0000265,0.546821436,0.584894802,pos,ns,0.966729182,Eri3,Eri3_Intron,4,117659061,117659110,117659109,117659110,50,+,TTTTTCATGGTGCACAGTCATAAATTTTTAAGAACAGCATGGGCAGCACG,"Intron (Eri3-201/Eri3, intron 8 of 8)",4,117550365,117674297,123933,1,Eri3-201,108696,Eri3-201;Eri3-206;Eri3-203,Eri3;Eri3;Eri3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,82,97,140546,ENSMUSG00000033423,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27289,cg02976613,-0.000109349,0.000017,-6.41666717,5.21E-10,loss,yes,0.0000277,0.000029,0.95590161,0.339866778,pos,ns,0.016399936,0.008481672,1.933573422,0.054075807,pos,ns,1.266996989,-0.001895117,0.000291684,-6.497156835,3.26E-10,neg,yes,0.616887542,Tox2,Tox2_Intron,2,163300773,163300822,163300773,163300774,50,-,CGTTTGTTTCAATTAAATGCTTACTGATTTTACAATAGCAGCTGGGCACC,"Intron (Tox2-202/Tox2, intron 3 of 8)",2,163203125,163324170,121046,1,Tox2-202,97648,Tox2-202;Tox2-201;Tox2-205,Tox2;Tox2;Tox2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,5,269389,ENSMUSG00000074607,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21066,cg18561921,-0.0000178,0.0000139,-1.288329828,0.198591909,loss,ns,0.0000225,0.0000235,0.955894624,0.339870302,pos,ns,0.016377042,0.006893997,2.375550885,0.018130528,pos,ns,1.741589554,-0.000829522,0.000237084,-3.49885248,0.000535688,neg,ns,0.307627152,Vrk1,Vrk1_Intergenic_downstream,12,106227255,106227304,106227255,106227256,50,-,CGAATTTTCTTTTGTGGGTCAAGTGGGTATTAACAAATGCTAAGACTGTT,Distal Intergenic,12,106030717,106075409,44693,1,Vrk1-204,196587,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,29,37,22367,ENSMUSG00000021115,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12743,cg05679679,-0.00000246,0.00000189,-1.302395833,0.193747866,loss,ns,-0.00000307,0.00000321,-0.955888124,0.339873581,neg,ns,0.001219039,0.000940345,1.296374647,0.19581066,pos,ns,0.70816367,-0.0000212,0.0000323,-0.656005212,0.512307362,neg,ns,0.956664008,Tpm1,Tpm1_Exon,9,67031939,67031988,67031987,67031988,50,+,CTCCTGGCCTACCTTCTCAGCCTGAGCCTCCAGTGACTTCAAGTTGTTCG,"Exon (Tpm1-215/Tpm1, exon 6 of 9)",9,67022590,67043907,21318,2,Tpm1-212,11919,Tpm1-212;Tpm1-215;Tpm1-216;Tpm1-211;Tpm1-209;Tpm1-202;Tpm1-218;Tpm1-214;Tpm1-213;Tpm1-220;Tpm1-210;Tpm1-208;Tpm1-205;Tpm1-203;Tpm1-206;Tpm1-207;Tpm1-204;Tpm1-201;Tpm1-221;Tpm1-217;Tpm1-219,Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,10,22003,ENSMUSG00000032366,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18138,cg01429989.1,0.0000166,0.0000085,1.951045093,0.051952293,gain,ns,-0.0000138,0.0000144,-0.955806511,0.339914754,neg,ns,-0.0000876,0.004229398,-0.02070835,0.98349163,neg,ns,0.007229332,0.000169281,0.000145449,1.163850933,0.245379402,pos,ns,0.871817777,Nup93,Nup93_Exon,8,94227719,94227768,94227767,94227768,50,-,CAGCTTGCTGCTGAGACTGAGGGCATCTCAGAGCTTCCCCATGTGGAACG,"Exon (Nup93-201/Nup93, exon 2 of 22)",8,94214564,94314860,100297,1,Nup93-201,13155,Nup93-201;Nup93-204;Nup93-207;Nup93-205;Nup93-202;Rpl10-ps5-201,Nup93;Nup93;Nup93;Nup93;Nup93;Rpl10-ps5,0;0;0;0;0;4726,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,71805,ENSMUSG00000032939,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25004,cg13964563,-0.0000517,0.00000809,-6.394643846,5.92E-10,loss,yes,0.0000131,0.0000137,0.955697186,0.339969911,pos,ns,-0.002205676,0.004027784,-0.547615183,0.584350213,neg,ns,0.233326794,-0.000104522,0.000138515,-0.754585873,0.451070345,neg,ns,0.848256099,Fgfr2,Fgfr2_Intron,7,131497338,131497387,131497338,131497339,50,+,CGAAGCATAATCAAGGTGTATGTTTGGAAAATTTATTGTTATAATTTTCC,"Intron (Fgfr2-217/Fgfr2, intron 2 of 6)",7,130162451,133123350,2960900,2,Fgfr2-217,1625963,Fgfr2-217;Gm45105-201,Fgfr2;Gm45105,0;-3435,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,58,79,14183,ENSMUSG00000030849,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2733,cg16197002,0.0000611,0.00001,6.100847208,3.14E-09,gain,yes,0.0000163,0.000017,0.95568604,0.339975535,pos,ns,0.013691174,0.004987874,2.744891703,0.00640615,pos,ns,2.193402873,-0.000175453,0.000171533,-1.022852939,0.307174908,neg,ns,0.122693207,Klhl14,Klhl14_Exon,18,21651698,21651747,21651698,21651699,50,-,CGCATCTCCTCGAAGTTGAGCAGCAGCACATCCTCCACCAGGTACTTGTT,Promoter (<=1kb),18,21550377,21652368,101992,2,Klhl14-201,621,Klhl14-201;Klhl14-202,Klhl14;Klhl14,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,38,225266,ENSMUSG00000042514,conserved gene and region,18,21651474,21651709,236,*,236,24,0.669491525,0.908128908,0.101694915,8.84E-19,CpGisland,TRUE,U3,Pr-B
24386,cg08153245,-0.0000201,0.00000705,-2.85000761,0.004664681,loss,ns,-0.0000114,0.000012,-0.955673273,0.339981977,neg,ns,-0.004918955,0.003508348,-1.402071398,0.161894446,neg,ns,0.790768051,-0.000206388,0.000120652,-1.710611521,0.088153285,neg,ns,0.834563211,Chd4,Chd4_Exon,6,125120280,125120329,125120280,125120281,50,-,CGGCACCATTATGAGCAGCAGCAAGAAGATCTAGCCCGAAATCTGGGCAA,"Exon (Chd4-203/Chd4, exon 26 of 39)",6,125095981,125130585,34605,1,Chd4-203,24299,Chd4-203;Chd4-201;Chd4-202;Chd4-204;Chd4-205,Chd4;Chd4;Chd4;Chd4;Chd4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,15,107932,ENSMUSG00000063870,conserved gene but different region,6,125120280,125120502,223,*,223,12,0.596412556,0.612918003,0.053811659,0.00000182,CpGisland,TRUE,U10,Tr-S
24410,cg26797826,-0.000000925,0.000000993,-0.932030438,0.352046097,loss,ns,-0.00000161,0.00000169,-0.955573707,0.340032217,neg,ns,0.00081988,0.00049403,1.659574783,0.098011262,pos,ns,1.008724019,-0.0000288,0.000017,-1.697529405,0.090600205,neg,ns,0.029737002,Actr3,Actr3_Promoter,1,125434683,125434732,125434683,125434684,50,-,CGGCTTTGACAAAACTAAGGAAGTTGCAGCGCGCTTGCTCACTGGGGGAC,Promoter (<=1kb),1,125392905,125435727,42823,2,Actr3-201,995,Actr3-201;Actr3-202;Actr3-212;Actr3-207;Actr3-211;Actr3-210;Actr3-205;Actr3-203;Actr3-208,Actr3;Actr3;Actr3;Actr3;Actr3;Actr3;Actr3;Actr3;Actr3,0;0;0;0;-37;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,1,2,74117,ENSMUSG00000026341,conserved gene and region,1,125434622,125434715,94,*,94,8,0.457446809,1.701357466,0.085106383,0.00000736,CpGisland,TRUE,U1,Pr-A
20351,cg09062456,0.000115702,0.00000752,15.38174986,4.55E-40,gain,yes,-0.0000122,0.0000128,-0.955524081,0.34005726,neg,ns,0.008052599,0.003743796,2.150917987,0.032255352,pos,ns,1.491398212,0.0000646,0.000128749,0.501792018,0.616170018,pos,ns,0.182818333,Hoxc5,Hoxc5_Exon,15,103009949,103009998,103009997,103009998,50,-,ACCAGAAAGCCAGTATCCAGATTTACCCCTGGATGCAGCGAATGAATTCG,"Exon (Hoxc6-202/Hoxc6, exon 2 of 3)",15,102967443,103015676,48234,1,Hoxc5-202,42506,Hoxc5-202;Hoxc5-201;Hoxc6-202;Hoxc6-203;Hoxc6-201,Hoxc5;Hoxc5;Hoxc6;Hoxc6;Hoxc6,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,72,134,15424,ENSMUSG00000022485,mapped to different genes,15,103009987,103010218,232,*,232,17,0.556034483,0.969041769,0.073275862,5.22E-11,CpGisland,TRUE,U13,Hc-P
20939,cg21421961,0.0000249,0.00000455,5.464268093,9.56E-08,gain,yes,-0.00000739,0.00000773,-0.955466779,0.340086178,neg,ns,0.007145207,0.00226561,3.153767312,0.001769696,pos,ns,2.752101287,-0.000174616,0.0000779,-2.241131099,0.025725201,neg,ns,0.84442273,Dchs1,Dchs1_Exon,7,105757668,105757717,105757668,105757669,50,+,CGTGCCGGCTGGGATGCAGCCAGACTGTAGGAAATCTGTCCTCCAGAGCC,"Exon (Dchs1-201/Dchs1, exon 17 of 21)",7,105752990,105787654,34665,2,Dchs1-201,29937,Dchs1-201;Dchs1-202;Gm15645-201,Dchs1;Dchs1;Gm15645,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,233651,ENSMUSG00000036862,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
18228,cg09529217,-0.0000229,0.00000687,-3.333628462,0.000961136,loss,ns,0.0000112,0.0000117,0.955439883,0.340099752,pos,ns,-0.0045628,0.003419276,-1.334434541,0.183040828,neg,ns,0.737452029,0.000138487,0.000117589,1.177725718,0.239809316,pos,ns,0.864848567,Maged1,Maged1_Exon,X,94537973,94538022,94537973,94537974,50,-,CGTTCCCAGTATGCCAGCCAGGGACTCGGGGGTACTGATGAGAATATACA,"Exon (Maged1-201/Maged1, exon 7 of 13)",20,94535474,94542143,6670,2,Maged1-201,4121,Maged1-201;Maged1-203;Maged1-205;Maged1-207;Maged1-204;Maged1-206;Maged1-202,Maged1;Maged1;Maged1;Maged1;Maged1;Maged1;Maged1,0;-409;-138;0;-89;0;3981,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,94275,ENSMUSG00000025151,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4953,cg22598501,-0.0000109,0.00000326,-3.329878032,0.000973717,loss,ns,0.00000529,0.00000554,0.955400796,0.340119478,pos,ns,-0.002906286,0.001623648,-1.789972256,0.074434242,neg,ns,1.128227229,0.0000796,0.0000558,1.425240002,0.155093882,pos,ns,0.937963333,Gm13426,Gm13426_Intergenic_downstream,2,31547750,31547799,31547750,31547751,50,-,CGAGAGAGAAAGAAGGAAAACAAAATATCTACAGTTGTCGAGACAAGAGG,Distal Intergenic,2,31551901,31552695,795,2,Gm13426-201,4945,Gm13426-201,Gm13426,4896,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,3,100416172,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12802,cg14850368,0.000108346,0.00000861,12.58369262,1.29E-29,gain,yes,-0.000014,0.0000146,-0.955142898,0.340249655,neg,ns,0.014356518,0.004285311,3.350169297,0.000907432,pos,ns,3.042186047,-0.0000292,0.000147371,-0.198107113,0.843091107,neg,ns,0.143348521,Mdga2,Mdga2_Exon,12,67220970,67221019,67220970,67220971,50,+,CGTACACTCCTTGGCCAGAGATCCCCTCCAGGAGGACTGTCAGCAGCCAC,"Exon (Mdga2-201/Mdga2, exon 1 of 17)",12,66466060,67222549,756490,2,Mdga2-201,1530,Mdga2-201;Mdga2-206;Mdga2-202;Mdga2-212;Mdga2-208;Mdga2-207,Mdga2;Mdga2;Mdga2;Mdga2;Mdga2;Mdga2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,320772,ENSMUSG00000034912,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
15892,cg24901985,-0.0000139,0.00000392,-3.533925551,0.000471796,loss,ns,0.00000637,0.00000666,0.955080201,0.340281307,pos,ns,0.001341897,0.001952566,0.687248266,0.49244011,pos,ns,0.30764658,-0.000217545,0.0000671,-3.239759344,0.001326218,neg,ns,0.934402508,Gm50420,Gm50420_Intergenic_upstream,18,83766388,83766437,83766388,83766389,50,-,CGCTCAGTTTAAAGCAATATGTCCATTAAAATAACCCGTACTGTTGGTGT,Distal Intergenic,18,83905796,83905942,147,1,Gm50420-201,-139408,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,9,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12287,cg04435494,-0.0000545,0.00000883,-6.174415859,2.08E-09,loss,yes,-0.0000143,0.000015,-0.954978493,0.340332657,neg,ns,-0.007891678,0.004396216,-1.795106989,0.073610628,neg,ns,1.133059477,0.0000763,0.000151185,0.504732588,0.614105261,pos,ns,0.869665647,Fign,Fign_Intergenic_downstream,2,63852449,63852498,63852449,63852450,50,+,CGTTTTAATGTGATTGGACTATAACAGACAATCTATTTACAGCATGCTCT,Distal Intergenic,2,63980447,64097988,117542,2,Fign-202,245490,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,28,84,60344,ENSMUSG00000075324,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25774,cg27145074,0.0000247,0.00000499,4.943665614,0.00000126,gain,yes,0.0000081,0.00000848,0.954865954,0.340389481,pos,ns,0.000449954,0.002483694,0.181163298,0.85635779,pos,ns,0.067344747,0.000107985,0.0000854,1.26425122,0.2070896,pos,ns,0.062041708,Uncx,Uncx_Promoter,5,139539419,139539468,139539419,139539420,50,-,CGTTTTAGCAAAGGTGATAAGTCAGTTTTAATTGAAATGAAATTATTATT,Promoter (4-5kb),5,139543494,139548179,4686,1,Uncx-201,-4075,Uncx-201;Uncx-202,Uncx;Uncx,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,22,88,22255,ENSMUSG00000029546,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
15726,cg15100050,-0.000055,0.0000175,-3.14831824,0.001801967,loss,ns,0.0000283,0.0000297,0.954860149,0.340392413,pos,ns,-0.006107256,0.008690176,-0.702777023,0.48272212,neg,ns,0.3163028,0.000159557,0.000298854,0.533893934,0.593797542,pos,ns,0.206559308,Phip,Phip_Promoter,9,82976029,82976078,82976077,82976078,50,+,GCATGTGTATAAATGCTGCGGATTGGCATCTGTGTAAGTCTTGTCCTGCG,Promoter (<=1kb),9,82866159,82975516,109358,2,Phip-201,-513,Phip-201;Phip-207;Phip-204;Phip-210;Phip-205;Phip-215,Phip;Phip;Phip;Phip;Phip;Phip,0;0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,13,83946,ENSMUSG00000032253,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
9316,cg11195606,-0.000000286,0.0000023,-0.124193055,0.90124291,loss,ns,-0.00000373,0.00000391,-0.954852544,0.340396253,neg,ns,0.002265011,0.001144417,1.979183256,0.048679896,pos,ns,1.312650354,-0.0000983,0.0000394,-2.49714111,0.013038396,neg,ns,0.949288195,Nr4a3,Nr4a3_threeUTR,4,48084740,48084789,48084740,48084741,50,+,CGTTATATTGTAATAGCTTTGCCTGTATTTATTGCAAGACCACCAGCTCC,3' UTR,4,48045153,48086445,41293,1,Nr4a3-201,39587,Nr4a3-201;Nr4a3-203,Nr4a3;Nr4a3,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,20,18124,ENSMUSG00000028341,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10702,cg19465208,-0.00000343,0.0000019,-1.807248266,0.071692921,loss,ns,-0.00000308,0.00000323,-0.954803948,0.340420793,neg,ns,-0.001431849,0.000944898,-1.515347113,0.130703481,neg,ns,0.883712846,-0.00000886,0.0000325,-0.272585621,0.785353246,neg,ns,0.042059119,Zfp608,Zfp608_Exon,18,54991190,54991239,54991190,54991191,50,-,CGATTTTGTTACAGTGCAAGCCTTTCACATCACGTGAGGATCAAGGGCTC,"Exon (Gm4221-203/Gm4221-203, exon 2 of 2)",18,54888723,54992555,103833,2,Zfp608-203,1316,Zfp608-201;Zfp608-203,Zfp608;Zfp608,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,32,269023,ENSMUSG00000052713,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
15524,cg12120400,-0.000101836,0.0000129,-7.87438254,5.81E-14,loss,yes,-0.000021,0.000022,-0.954740375,0.340452897,neg,ns,-0.006936729,0.006436695,-1.077684791,0.282012332,neg,ns,0.5497319,0.000238877,0.000221357,1.079143977,0.281362469,pos,ns,0.809600441,Gm11765,Gm11765_Intergenic_upstream,4,81566285,81566334,81566285,81566286,50,+,CGTGTTTAGTACACTTGAAAATATTTGCATTGCAAAAGGAGAGCGAATCT,Distal Intergenic,4,81455943,81461732,5790,2,Gm11765-201,-104553,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,100040131,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3613,cg18513739,-0.00000222,0.00000163,-1.359215958,0.175066127,loss,ns,0.00000265,0.00000277,0.954506895,0.340570822,pos,ns,0.002621277,0.000812526,3.226085159,0.001389047,pos,ns,2.857282926,-0.0000563,0.0000279,-2.01491835,0.044776242,neg,ns,0.067423746,Rps24,Rps24_Intron,14,24779249,24779298,24779297,24779298,50,-,CCGCCTTGGCAGCAGAAGGTGACATCTGGTGACTAATGGCCGCGGCTGCG,"Intron (4930428N03Rik-205/4930428N03Rik-205, intron 3 of 5)",14,24491149,24491989,841,1,Rps24-209,288149,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,12,20088,ENSMUSG00000025290,mapped to different genes,14,24779188,24779323,136,*,136,14,0.720588235,0.801346801,0.102941177,3.56E-11,CpGisland,TRUE,NA,NRS
2272,cg16504667,-0.00000645,0.00000223,-2.891971899,0.004099067,loss,ns,0.00000362,0.00000379,0.954503291,0.340572643,pos,ns,-0.001645842,0.001110233,-1.482429858,0.139241786,neg,ns,0.856230414,0.0000274,0.0000382,0.71670182,0.474097706,pos,ns,0.953844759,Meis1,Meis1_threeUTR,11,18881841,18881890,18881889,18881890,50,-,GGTTGGGTATAACTTGGCTGTCCCATACTCACACCCATTGGACCACCCCG,3' UTR,11,18879817,19018985,139169,2,Meis1-206,137095,Meis1-206;Meis1-202;Meis1-209;Meis1-201;Meis1-203;Meis1-208;Meis1-207,Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,12,88,17268,ENSMUSG00000020160,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3793,cg00001582,-0.00000187,0.00000195,-0.962794985,0.336400825,loss,ns,0.00000315,0.0000033,0.95437534,0.340637279,pos,ns,0.001421565,0.000968112,1.468388437,0.143012681,pos,ns,0.844625451,0.00000274,0.0000333,0.082189665,0.934548933,pos,ns,0.050930713,Zmiz1,Zmiz1_fiveUTR,14,25459181,25459230,25459229,25459230,50,-,GCCCTTTGGAAATAGAATAGCCAATGTAATCTGACACTTCAACTTGCTCG,Promoter (<=1kb),14,25459185,25538492,79308,1,Zmiz1-206,0,Zmiz1-206;Zmiz1-208;Zmiz1-201;Zmiz1-202,Zmiz1;Zmiz1;Zmiz1;Zmiz1,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,15,328365,ENSMUSG00000007817,conserved gene but different region,14,25459229,25459638,410,*,410,55,0.704878049,1.080084299,0.134146342,7.65E-50,CpGisland,TRUE,U1,Pr-A
27408,cg24148137,0.0000519,0.00000762,6.80732613,5.15E-11,gain,yes,-0.0000123,0.0000129,-0.953895944,0.340879522,neg,ns,0.005529492,0.003791413,1.458424978,0.145735836,pos,ns,0.836433644,-0.00015046,0.000130386,-1.153956948,0.249406679,neg,ns,0.086451706,Fam78b,Fam78b_fiveUTR,1,167001557,167001606,167001605,167001606,50,+,GGCTGCAGGATGGGCTGTATCCAAAGCATCACCTGCAAGGCGCGGATCCG,Promoter (<=1kb),1,167001580,167088724,87145,1,Fam78b-201,0,Fam78b-205;Fam78b-206;Fam78b-204;Fam78b-202;Fam78b-201;Fam78b-203,Fam78b;Fam78b;Fam78b;Fam78b;Fam78b;Fam78b,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,9,226610,ENSMUSG00000060568,conserved gene but different region,1,167000772,167001755,984,*,984,138,0.762195122,0.968669748,0.140243902,1.97E-127,CpGisland,TRUE,U3,Pr-B
2712,cg22113843,-0.00000585,0.00000251,-2.329225107,0.020489416,loss,ns,-0.00000407,0.00000427,-0.953753344,0.3409516,neg,ns,-0.000929569,0.001250246,-0.743509207,0.457736572,neg,ns,0.339384387,-0.0000889,0.000043,-2.067235155,0.039541718,neg,ns,0.022793004,Kat6b,Kat6b_fiveUTR,14,21500895,21500944,21500943,21500944,50,+,ATGTCGGATTCATGTCAACGACAACAACAGGGGGACACAAAATGGCGGCG,5' UTR,14,21481434,21517111,35678,1,Kat6b-209,19461,Kat6b-209;Kat6b-211;Kat6b-206;Kat6b-204;Kat6b-201;Kat6b-207;Kat6b-202;Kat6b-208;Kat6b-212;Kat6b-210,Kat6b;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,7,21,54169,ENSMUSG00000021767,conserved gene and region,14,21500899,21501345,447,*,447,45,0.727069351,0.780983072,0.100671141,1.37E-34,CpGisland,TRUE,U1,Pr-A
9202,cg26647139,0.0000108,0.0000028,3.854741322,0.00014086,gain,ns,-0.00000454,0.00000476,-0.953697594,0.340979783,neg,ns,0.00079142,0.001394757,0.567424584,0.570836429,pos,ns,0.243488319,-0.0000636,0.000048,-1.32568528,0.18592003,neg,ns,0.056048118,Cadm1,Cadm1_Promoter,9,47529769,47529818,47529769,47529770,50,+,CGTGCAAAGCACGCATGCACTTCTCCCAGATTGTTTTGTCAATCCGGGGA,Promoter (<=1kb),9,47530173,47853385,323213,1,Cadm1-204,-355,Cadm1-204;Cadm1-209;Cadm1-206;Cadm1-202;Cadm1-203;Cadm1-207;Cadm1-205;Cadm1-211;Cadm1-210;Cadm1-208;Cadm1-201,Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1,0;0;0;0;0;0;0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,77,54725,ENSMUSG00000032076,conserved gene and region,9,47529732,47530867,1136,*,1136,108,0.661971831,0.867966976,0.095070423,3.10E-79,CpGisland,TRUE,NA,NRS
6336,cg21026697,0.00010232,0.0000753,1.359649387,0.174929005,gain,ns,0.000121879,0.000127847,0.953313908,0.341173779,pos,ns,-0.01900002,0.037454934,-0.507276838,0.612321263,neg,ns,0.21302066,0.001333278,0.001288072,1.035096163,0.30143078,pos,ns,0.481240186,Pknox2,Pknox2_Intron,9,36934307,36934356,36934307,36934308,50,-,CGTTGGGCTACGTGTGCGGGGTTGTAAAAAATACAGATGCCAAATTAACT,"Intron (Pknox2-207/Pknox2, intron 4 of 10)",9,36890982,37083309,192328,2,Pknox2-207,148953,Pknox2-207;Pknox2-201;Pknox2-202;Pknox2-203;Pknox2-206;Pknox2-204;Pknox2-205;Pknox2-208;Pknox2-210;Pknox2-209,Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,47,208076,ENSMUSG00000035934,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1841,cg25369687,-0.0000112,0.00000692,-1.612939166,0.107775218,loss,ns,-0.0000112,0.0000117,-0.953140968,0.341261243,neg,ns,-0.007618554,0.003442084,-2.213354878,0.027601122,neg,ns,1.559073267,0.0000675,0.000118373,0.570006899,0.569085875,pos,ns,0.8912626,Gli3,Gli3_Intron,13,15543756,15543805,15543756,15543757,50,-,CGAAATACCAGAAATAGGACGTAAGCTCTGATCAGGGAGACTGCGAGCAC,"Intron (Gli3-202/Gli3, intron 2 of 11)",13,15463235,15715091,251857,1,Gli3-202,80521,Gli3-202;Gli3-204;Gli3-203;Gli3-201,Gli3;Gli3;Gli3;Gli3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,19,21,14634,ENSMUSG00000021318,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9614,cg08931401,-0.0000127,0.00000316,-4.012222795,0.0000755,loss,ns,0.00000512,0.00000537,0.953125842,0.341268894,pos,ns,0.001573234,0.001573473,0.999847823,0.318163961,pos,ns,0.497349016,-0.000084,0.0000541,-1.552428663,0.121579972,neg,ns,0.929187414,Epc2,Epc2_Exon,2,49532030,49532079,49532030,49532031,50,-,CGTCATGTAAACAGCACCCTCATCATTTGTCTTTGAAAGAAGAGGCTTCT,"Exon (Epc2-201/Epc2, exon 7 of 14)",2,49451486,49551948,100463,1,Epc2-201,80544,Epc2-201;Epc2-202,Epc2;Epc2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,14,227867,ENSMUSG00000069495,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15755,cg00114412,-0.000146185,0.0000124,-11.78868496,9.43E-27,loss,yes,0.0000201,0.0000211,0.953107758,0.341278041,pos,ns,0.01199096,0.006171824,1.942855284,0.052938795,pos,ns,1.276225949,-0.000784668,0.000212249,-3.696931346,0.000257994,neg,ns,0.6141456,Rgs6,Rgs6_threeUTR,12,83150163,83150212,83150211,83150212,50,+,TCCTAAAAACACAATTGCCTAGTGCTGCTGGCGCAGAGTCAGAATGGCCG,3' UTR,12,82616636,83157971,541336,1,Rgs6-209,533527,Rgs6-209;Rgs6-203;Rgs6-216;Rgs6-222;Rgs6-208;Rgs6-205;Rgs6-206;Rgs6-204;Rgs6-207;Rgs6-220,Rgs6;Rgs6;Rgs6;Rgs6;Rgs6;Rgs6;Rgs6;Rgs6;Rgs6;Rgs6,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,5,50779,ENSMUSG00000021219,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25805,cg26734456,0.00000694,0.00000206,3.361451512,0.000872418,gain,ns,0.00000334,0.00000351,0.953012912,0.341326016,pos,ns,0.00056929,0.00102689,0.554383198,0.579716338,pos,ns,0.23678446,0.00000277,0.0000353,0.078401188,0.93755951,pos,ns,0.044713142,Uncx,Uncx_Intergenic_downstream,5,139550091,139550140,139550139,139550140,50,-,TGCCGGTTATTTTATCTAAGGTGAACAATTTGTCTGGCAGCGATAAATCG,Downstream (1-2kb),5,139543898,139545268,1371,1,Uncx-202,6242,Uncx-201;Uncx-202,Uncx;Uncx,0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,59,88,22255,ENSMUSG00000029546,conserved gene and region,5,139550084,139550187,104,*,104,11,0.509615385,1.62962963,0.105769231,5.75E-09,CpGisland,TRUE,U13,Hc-P
26836,cg06994774,-0.00000159,0.000000753,-2.112564181,0.035437403,loss,ns,0.00000122,0.00000128,0.952975827,0.341344776,pos,ns,0.000511622,0.000374771,1.365159181,0.173192906,pos,ns,0.7614699,-0.00000533,0.0000129,-0.413465063,0.679551787,neg,ns,0.973792901,Lamc1,Lamc1_threeUTR,1,153220108,153220157,153220108,153220109,50,-,CGCAAAGTACAAAGTTGCATAGTGTTAAAGGCTATATATGAATCTCAAAG,3' UTR,1,153218922,153229144,10223,2,Lamc1-204,8987,Lamc1-204;Lamc1-201,Lamc1;Lamc1,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,6,226519,ENSMUSG00000026478,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6002,cg05002500,-0.0000136,0.00000635,-2.135060226,0.033539874,loss,ns,-0.0000103,0.0000108,-0.952786447,0.341440587,neg,ns,-0.008971428,0.003159594,-2.839424113,0.004818121,neg,ns,2.317122294,0.0000197,0.000108658,0.181187965,0.856338445,pos,ns,0.839000583,Atp11b,Atp11b_Exon,3,35819925,35819974,35819925,35819926,50,+,CGAGAAACTATTGAAGCATTGAGAATGGCTGGTATCAAAGTATGGGTACT,"Exon (Atp11b-210/Atp11b, exon 19 of 22)",3,35754134,35829688,75555,1,Atp11b-210,65791,Atp11b-210;Atp11b-203;Atp11b-201;Atp11b-207,Atp11b;Atp11b;Atp11b;Atp11b,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,76295,ENSMUSG00000037400,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19505,cg07168840,-0.000051,0.0000109,-4.665721974,0.00000458,loss,ns,0.0000177,0.0000186,0.952621216,0.341524193,pos,ns,-0.011358191,0.005441231,-2.087430202,0.037665596,neg,ns,1.424055155,0.000282775,0.000187123,1.511169835,0.131763849,pos,ns,0.628636524,Foxp1,Foxp1_Intron,6,99485554,99485603,99485602,99485603,50,-,TCCAAGTTCAGCTGGGCCCCCAGAGAAAGGCAATGCTTGTGTTTAGCCCG,"Intron (Foxp1-220/Foxp1, intron 1 of 19)",6,98929189,99520997,591809,2,Foxp1-220,35394,Foxp1-220;Foxp1-224;Foxp1-227;Foxp1-216;Gm20696-201;Gm20696-203,Foxp1;Foxp1;Foxp1;Foxp1;Gm20696;Gm20696,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,87,108655,ENSMUSG00000030067,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17376,cg02315747,0.000150868,0.0000156,9.676494915,1.59E-19,gain,yes,-0.0000252,0.0000265,-0.952481461,0.34159492,neg,ns,0.022702301,0.007759905,2.92558999,0.003691871,pos,ns,2.432753443,-0.000604258,0.000266862,-2.264304728,0.02424591,neg,ns,0.112857544,Gbx2,Gbx2_Exon,1,89931945,89931994,89931993,89931994,50,-,GAGATTATCCTGATGAAAGCTTTATGATGTTTGCTCAAATAAAAGCTGCG,Promoter (<=1kb),1,89927956,89931179,3224,2,Gbx2-201,-815,Gbx2-201;Gbx2-202,Gbx2;Gbx2,0;-2760,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,13,14472,ENSMUSG00000034486,conserved gene but different region,1,89931993,89932095,103,*,103,9,0.59223301,0.996774194,0.087378641,0.00000118,CpGisland,TRUE,U13,Hc-P
24566,cg15819642,-0.0000339,0.00000507,-6.681206726,1.10E-10,loss,yes,0.00000821,0.00000862,0.952369057,0.341651811,pos,ns,-0.005112619,0.002524569,-2.025144958,0.043709172,neg,ns,1.359427423,0.000187651,0.0000868,2.161390283,0.031430486,pos,ns,0.91289876,Maz,Maz_Exon,7,127023586,127023635,127023634,127023635,50,-,AGCTGGGCAGGGGTCTTGCAGTGCACGCTGCACAGCTTGCACAGGATGCG,"Exon (Maz-203/Maz, exon 5 of 6)",7,127022130,127026526,4397,2,Maz-203,2891,Gm42742-201;Gm42742-203;Gm42742-204;Gm42742-202;Kif22-202;Kif22-201;Kif22-205;Maz-203;Maz-201;Maz-204;Maz-202;Maz-206;Maz-205;Prrt2-201;Prrt2-202;Prrt2-204;Prrt2-203;Prrt2-205;Prrt2-206;Prrt2-207,Gm42742;Gm42742;Gm42742;Gm42742;Kif22;Kif22;Kif22;Maz;Maz;Maz;Maz;Maz;Maz;Prrt2;Prrt2;Prrt2;Prrt2;Prrt2;Prrt2;Prrt2,0;0;0;0;5322;18836;4481;0;0;0;0;0;0;0;0;-3684;-3991;-2630;-2449;-3231,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,16,17,17188,ENSMUSG00000030678,conserved gene and region,7,127023537,127023683,147,*,147,10,0.700680272,0.560640732,0.068027211,0.00000233,CpGisland,TRUE,U12,Tr-I
8929,cg00284078,-0.0000189,0.00000851,-2.217321436,0.027326178,loss,ns,-0.0000138,0.0000145,-0.952287367,0.341693161,neg,ns,-0.010284177,0.004234486,-2.428671702,0.015722643,neg,ns,1.803474455,-0.000154355,0.000145624,-1.059959859,0.289988009,neg,ns,0.796347375,Gm13469,Gm13469_Intergenic_downstream,2,46327005,46327054,46327053,46327054,50,+,TTCCATTTCTTATAAATAGCCACAAGAAAAGTATTAATTATCCTTGTACG,Distal Intergenic,2,46406220,46406569,350,2,Gm13469-201,79515,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,27,383690,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15724,cg05432180,-0.00000626,0.00000127,-4.919483248,0.00000141,loss,yes,0.00000206,0.00000216,0.952217846,0.341728354,pos,ns,0.00055651,0.000633634,0.878283472,0.380470114,pos,ns,0.419679452,-0.00000947,0.0000218,-0.434710952,0.664074696,neg,ns,0.048399756,Phip,Phip_Exon,9,82975102,82975151,82975150,82975151,50,-,GACAGGGTCCATCTTCCAGGAACCGGGCGATGAGGAAGTAGAGCTCTGCG,Promoter (<=1kb),9,82866159,82975516,109358,2,Phip-201,365,Phip-201;Phip-207;Phip-204;Phip-210;Phip-205;Phip-215,Phip;Phip;Phip;Phip;Phip;Phip,0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,13,83946,ENSMUSG00000032253,conserved gene and region,9,82974706,82975816,1111,*,1111,168,0.765076508,1.034038027,0.151215122,1.08E-161,CpGisland,TRUE,U1,Pr-A
25840,cg21047370,-0.00000175,0.00000616,-0.284549604,0.776179211,loss,ns,0.00000996,0.0000105,0.952168964,0.3417531,pos,ns,-0.008693483,0.003064361,-2.83696401,0.004854439,neg,ns,2.313860981,0.000181523,0.000105383,1.722504293,0.085975547,pos,ns,0.818853502,Uncx,Uncx_Intergenic_downstream,5,139611036,139611085,139611084,139611085,50,-,TGAAATCGGTTTGAAATGGCGTGTCAGGTTTTTCTCTCCCTGCTGAAGCG,Distal Intergenic,5,139543898,139545268,1371,1,Uncx-202,67187,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,59,88,22255,ENSMUSG00000029546,conserved gene and region,5,139610994,139611187,194,*,194,13,0.608247423,0.724712644,0.067010309,4.64E-08,CpGisland,TRUE,U11,Tr-P
22765,cg01860662,0.0000617,0.0000193,3.198567564,0.001523927,gain,ns,0.0000312,0.0000328,0.952107345,0.341784296,pos,ns,-0.014577987,0.009597549,-1.518928058,0.129799793,neg,ns,0.886726001,0.00104398,0.000330059,3.163010464,0.001716174,pos,ns,0.46733271,Dmbx1,Dmbx1_Intron,4,115932004,115932053,115932004,115932005,50,+,CGTTTCACAAGCTGTCGAATTGTGCTTACATTGGTTAAAAGAATCTTTAT,"Intron (Dmbx1-203/Dmbx1, intron 1 of 4)",4,115915119,115939926,24808,2,Dmbx1-203,7873,Dmbx1-203;Dmbx1-202,Dmbx1;Dmbx1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,42,140477,ENSMUSG00000028707,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
26282,cg23571288,0.0000103,0.00000155,6.643766839,1.37E-10,gain,yes,-0.00000251,0.00000264,-0.952056265,0.341810158,neg,ns,0.002474453,0.000772007,3.205219818,0.001490253,pos,ns,2.826740129,-0.0000707,0.0000265,-2.663942775,0.008126899,neg,ns,0.050325462,Cdk8,Cdk8_fiveUTR,5,146231673,146231722,146231673,146231674,50,+,CGGCCTCAGAGGCTGTGACAATGGACTATGACTTTAAAGTGAAGCTGAGC,Promoter (<=1kb),5,146231230,146302874,71645,1,Cdk8-207,443,Cdk8-207;Cdk8-205;Cdk8-206;Cdk8-201;Cdk8-202,Cdk8;Cdk8;Cdk8;Cdk8;Cdk8,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,6,264064,ENSMUSG00000029635,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
13014,cg18004778,-0.0000013,0.00000206,-0.630614399,0.52875729,loss,ns,0.00000333,0.0000035,0.951966439,0.34185564,pos,ns,0.001388678,0.001025905,1.353612114,0.176846258,pos,ns,0.752404126,-0.0000201,0.0000353,-0.570219865,0.56894162,neg,ns,0.083354135,Kpna4,Kpna4_Exon,3,69126747,69126796,69126795,69126796,50,-,TTTGTTCTTGAAATTCTTGAGCCGTTGGTTGTCCAGTTTCTCGTTGTCCG,Promoter (<=1kb),3,69067149,69127113,59965,2,Kpna4-201,317,Kpna4-201;Kpna4-203;Kpna4-202,Kpna4;Kpna4;Kpna4,0;0;-117,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,5,16649,ENSMUSG00000027782,conserved gene and region,3,69126333,69127197,865,*,865,121,0.738728324,1.032973432,0.139884393,1.20E-111,CpGisland,TRUE,U1,Pr-A
27369,cg05704605,0.000000817,0.00000111,0.733720106,0.463673874,gain,ns,0.0000018,0.00000189,0.951940122,0.341868966,pos,ns,0.001656619,0.000554349,2.988405801,0.003028539,pos,ns,2.518766844,-0.0000408,0.0000191,-2.138489364,0.033258438,neg,ns,0.970417987,Zmynd8,Zmynd8_Exon,2,165807647,165807696,165807695,165807696,50,-,CACTTTTGGGAGGACGTTTGAAACTTACTTGATGAGTTCCACACGACCCG,"Exon (Zmynd8-205/Zmynd8, exon 14 of 22)",2,165784152,165858173,74022,2,Zmynd8-205,50477,Zmynd8-205;Zmynd8-221;Zmynd8-203;Zmynd8-220;Zmynd8-201;Zmynd8-206;Zmynd8-218;Zmynd8-202,Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,12,228880,ENSMUSG00000039671,conserved gene and region,2,165807626,165807917,292,*,292,27,0.640410959,0.921028037,0.092465753,6.59E-20,CpGisland,TRUE,U10,Tr-S
26787,cg09705951,0.0000273,0.00000342,8.001295282,2.48E-14,gain,yes,0.00000553,0.00000581,0.951903321,0.341887601,pos,ns,0.006380763,0.001700679,3.751890783,0.000209451,pos,ns,3.678916671,-0.0000378,0.0000585,-0.64640397,0.518496031,neg,ns,0.084654752,Chd5,Chd5_Promoter,4,152338581,152338630,152338629,152338630,50,-,GAACGATGGGATGGGGTTGCCACAGCAACCAGACTGGACGTCACAATCCG,Promoter (<=1kb),4,152338651,152390194,51544,1,Chd5-205,-70,Chd5-202;Chd5-205;Chd5-201;Chd5-204;Rpl22-204;Rpl22-208,Chd5;Chd5;Chd5;Chd5;Rpl22;Rpl22,0;0;0;0;12714;12712,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,7,269610,ENSMUSG00000005045,mapped to different genes,4,152338556,152339428,873,*,873,126,0.78465063,0.959390863,0.144329897,2.67E-118,CpGisland,TRUE,U3,Pr-B
22182,cg18757432,0.0000232,0.0000143,1.618170904,0.106642739,gain,ns,0.0000232,0.0000244,0.951812913,0.341933384,pos,ns,0.005898277,0.007139134,0.826189388,0.409332072,pos,ns,0.387924226,0.0000588,0.000245514,0.239394196,0.81095813,pos,ns,0.655103521,Slitrk5,Slitrk5_Exon,14,111679489,111679538,111679537,111679538,50,-,CTTATCCTCAATGACAATCTTTTGTCCAGTTTACCCAACAATCTTTTCCG,"Exon (Slitrk5-201/Slitrk5, exon 2 of 2)",14,111675097,111683141,8045,1,Slitrk5-201,4392,Slitrk5-201;Slitrk5-202,Slitrk5;Slitrk5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,Exon,10,10,75409,ENSMUSG00000033214,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
7892,cg07322062,0.0000682,0.0000108,6.302918644,0.000000001,gain,yes,-0.0000175,0.0000184,-0.951760387,0.341959985,neg,ns,0.02629389,0.005385259,4.882567769,0.00000168,pos,ns,5.774774961,-0.000577063,0.000185199,-3.115915659,0.002005356,neg,ns,0.170732233,Ebf1,Ebf1_Exon,11,44620404,44620453,44620452,44620453,50,+,TTGGCCGCAGCGGGGTGGGTCTGGCCCGGGCTCACTTTGAGAAGCAGCCG,"Exon (Ebf1-203/Ebf1, exon 2 of 16)",11,44617317,45004995,387679,1,Ebf1-203,3087,Ebf1-203;Ebf1-202;Ebf1-201;Ebf1-207;Ebf1-204;Ebf1-205,Ebf1;Ebf1;Ebf1;Ebf1;Ebf1;Ebf1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,15,80,13591,ENSMUSG00000057098,conserved gene and region,11,44620336,44620646,311,*,311,21,0.620578778,0.704530744,0.067524116,9.07E-13,CpGisland,TRUE,U3,Pr-B
19733,cg02981187,-0.0000023,0.00000229,-1.007607605,0.314428705,loss,ns,-0.0000037,0.00000388,-0.951750369,0.341965059,neg,ns,-0.000699726,0.001138011,-0.614867748,0.539093119,neg,ns,0.268336211,0.0000805,0.0000391,2.057174665,0.04050571,pos,ns,0.947260504,Scn8a,Scn8a_Exon,15,100959372,100959421,100959420,100959421,50,+,TTTCAGCTCTACGCACTTTCAGGGTACTGAGGGCTTTGAAAACTATTTCG,"Exon (Scn8a-212/Scn8a, exon 6 of 15)",15,100870645,101011064,140420,1,Scn8a-212,88727,Scn8a-212;Scn8a-201;Scn8a-204;Scn8a-213;Scn8a-203;Scn8a-205;Scn8a-208;Scn8a-210;Scn8a-216;Scn8a-215;Scn8a-219,Scn8a;Scn8a;Scn8a;Scn8a;Scn8a;Scn8a;Scn8a;Scn8a;Scn8a;Scn8a;Scn8a,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,18,24,20273,ENSMUSG00000023033,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20793,cg25418850,0.00000565,0.00000349,1.617247704,0.106841886,gain,ns,0.00000565,0.00000594,0.95173443,0.341973132,pos,ns,-0.000664659,0.001739208,-0.382161821,0.702603191,neg,ns,0.153289882,0.00000867,0.0000598,0.144935846,0.884855709,pos,ns,0.799718919,Mrc2,Mrc2_Exon,11,105333619,105333668,105333619,105333620,50,+,CGTAGGAAGGCCGCTGGAACGACAGTCCCTGTAACCAGTCCTTGCCATCC,"Exon (Mrc2-202/Mrc2, exon 9 of 30)",11,105292646,105351139,58494,1,Mrc2-202,40973,Mrc2-202;Mrc2-201;Mrc2-204,Mrc2;Mrc2;Mrc2,0;0;4567,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,17534,ENSMUSG00000020695,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13301,cg19641975,0.00000149,0.0000113,0.131094587,0.895785518,gain,ns,-0.0000183,0.0000193,-0.951649733,0.34201603,neg,ns,-0.002492443,0.005644528,-0.441568101,0.659109615,neg,ns,0.181042353,0.000451455,0.000194115,2.325711237,0.020678853,pos,ns,0.434837811,Gm44690,Gm44690_Intergenic_upstream,7,70068361,70068410,70068361,70068362,50,+,CGGAAACATCAATAAGCAACAAGCTTCTGACAGCTCTGAGACATTCCAGC,Distal Intergenic,7,69883979,69884360,382,2,Gm44690-201,-184001,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,15,24,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13526,cg09484587,-0.00000328,0.00000321,-1.020103471,0.308474821,loss,ns,0.0000052,0.00000546,0.951633558,0.342024222,pos,ns,-0.002512337,0.00159933,-1.570868823,0.117233201,neg,ns,0.930949377,0.00012368,0.000055,2.248686024,0.025234537,pos,ns,0.946612582,Gm10172,Gm10172_Intergenic_downstream,7,71165587,71165636,71165635,71165636,50,+,AACCTGACATTTAACAATAATTACCCTTTCGAATGACCCTGGCCCAATCG,Distal Intergenic,7,71332363,71332921,559,2,Gm10172-201,167285,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,31,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1598,cg24987801,-0.00000898,0.00000347,-2.583564006,0.010236127,loss,ns,-0.00000562,0.0000059,-0.951553014,0.342065021,neg,ns,-0.002805498,0.001729002,-1.622611437,0.10568898,neg,ns,0.975970295,0.000036,0.0000595,0.604767715,0.545775748,pos,ns,0.920926821,Zfp521,Zfp521_Intron,18,13811963,13812012,13812011,13812012,50,+,TATCTGTGTAAATCGATGAACATCTATGAAAAACAACACCCAGCAGAACG,"Intron (Zfp521-201/Zfp521, intron 5 of 7)",18,13687013,13972787,285775,2,Zfp521-201,160775,Zfp521-201;Zfp521-205;Zfp521-204;Zfp521-206,Zfp521;Zfp521;Zfp521;Zfp521,0;0;0;31820,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,81,225207,ENSMUSG00000024420,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19924,cg10951023,0.000000628,0.00000301,0.208669412,0.834843361,gain,ns,0.00000486,0.00000511,0.951416905,0.342133972,pos,ns,0.001089368,0.001497938,0.727245049,0.467624705,pos,ns,0.330102553,0.00000251,0.0000515,0.04878418,0.961122705,pos,ns,0.940448701,Ogt,Ogt_Exon,X,101654391,101654440,101654439,101654440,50,-,TCTTCTGATGATGCGCTGTGACCCTGCAGTAGCGCAAAGGCTGCGCAGCG,"Exon (Ogt-204/Ogt, exon 4 of 4)",20,101640060,101682940,42881,1,Ogt-202,14331,Ogt-202;Ogt-206;Ogt-201;Ogt-205;Ogt-204;Ogt-207;Ogt-203,Ogt;Ogt;Ogt;Ogt;Ogt;Ogt;Ogt,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,Exon,32,33,108155,ENSMUSG00000034160,conserved gene and region,X,101654404,101654477,74,*,74,8,0.608108108,1.174603175,0.108108108,0.0000012,CpGisland,TRUE,U10,Tr-S
13754,cg18775165,-0.0000409,0.00000944,-4.335969017,0.0000197,loss,ns,0.0000153,0.000016,0.951405735,0.342139631,pos,ns,-0.003795782,0.004698225,-0.807918226,0.419757173,neg,ns,0.377001873,0.000187995,0.000161572,1.16353819,0.245505996,pos,ns,0.917528599,Map3k20,Map3k20_Intron,2,72379334,72379383,72379382,72379383,50,-,AAAAGAACTTCAGTGGCGTAAACACCGTTTGTGCTGTGTCCCCAGCCTCG,"Intron (Map3k20-201/Map3k20, intron 8 of 19)",2,72285637,72442610,156974,1,Map3k20-201,93697,Map3k20-201;Map3k20-204;Map3k20-202;Map3k20-206,Map3k20;Map3k20;Map3k20;Map3k20,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,14,18,65964,ENSMUSG00000004085,mapped to different genes,2,72379242,72379383,142,*,142,11,0.563380282,0.991746032,0.077464789,0.00000016,CpGisland,TRUE,NA,NRS
17321,cg25544947,-0.0000084,0.00000277,-3.033157046,0.002624663,loss,ns,0.00000448,0.00000471,0.951349898,0.34216792,pos,ns,0.000741177,0.001378996,0.537475861,0.591324553,pos,ns,0.228174088,-0.0000703,0.0000474,-1.48296166,0.139100495,neg,ns,0.933719753,Agap1,Agap1_Intron,1,89700363,89700412,89700363,89700364,50,-,CGCCTTGCAATAAAAGATGTCTCATAATCTGCTTCATTTAGCAGCAAGAG,"Intron (Agap1-201/Agap1, intron 9 of 17)",1,89454806,89897617,442812,1,Agap1-201,245557,Agap1-201;Agap1-204;Agap1-202,Agap1;Agap1;Agap1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,29,347722,ENSMUSG00000055013,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18224,cg00920973,-0.00000877,0.00000313,-2.799036814,0.005446742,loss,ns,0.00000506,0.00000532,0.951156086,0.342266125,pos,ns,0.001926239,0.001559309,1.235316043,0.217648282,pos,ns,0.662244757,-0.000171392,0.0000536,-3.196159925,0.001536287,neg,ns,0.911185833,Ap3b1,Ap3b1_Intron,13,94523294,94523343,94523294,94523295,50,+,CGCTGTCTGTCTGTTATTAGGGAGATAACAGCTCTTATAAATGTTTCAGT,"Intron (Ap3b1-201/Ap3b1, intron 22 of 26)",13,94358960,94566317,207358,1,Ap3b1-201,164334,Ap3b1-201;Ap3b1-205;Ap3b1-204,Ap3b1;Ap3b1;Ap3b1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,55,11774,ENSMUSG00000021686,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10077,cg21251501,0.0000856,0.000012,7.108635166,8.11E-12,gain,yes,-0.0000195,0.0000205,-0.951010181,0.342340067,neg,ns,0.013609782,0.005992592,2.27110112,0.023826358,pos,ns,1.622942337,-0.000382935,0.000206085,-1.858143014,0.06409654,neg,ns,0.139462376,Hoxa1,Hoxa1_Exon,6,52161171,52161220,52161219,52161220,50,-,TGTGTTCCTGCAATTGATCTCTTTGATGACATTCTCATTCATAGAAAGCG,Promoter (2-3kb),6,52155590,52158317,2728,2,Hoxa1-201,-2903,Gm28308-201;Hoxa1-201;Hoxa1-202;Hoxa2-201,Gm28308;Hoxa1;Hoxa1;Hoxa2,0;-2854;-2854;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,6,15394,ENSMUSG00000029844,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
16783,cg08370485,-0.00000181,0.00000128,-1.413998414,0.158365843,loss,ns,0.00000206,0.00000217,0.950865362,0.342413469,pos,ns,0.001059783,0.000635792,1.666870027,0.096550195,pos,ns,1.015246847,-0.0000297,0.0000219,-1.356927236,0.175791538,neg,ns,0.03655524,Pcbp1,Pcbp1_Exon,6,86525417,86525466,86525465,86525466,50,-,GCATGACCAGGCAAATCTGCTTGACACACTCGGTGACAGACTGCGGCACG,Promoter (<=1kb),6,86524492,86526321,1830,2,Pcbp1-201,855,Pcbp1-201,Pcbp1,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,14,15,23983,ENSMUSG00000051695,mapped to different genes,6,86525220,86525644,425,*,425,38,0.665882353,0.811965812,0.089411765,3.12E-27,CpGisland,TRUE,U1,Pr-A
18457,cg03157204,0.0000148,0.0000587,0.252795688,0.800593644,gain,ns,0.0000948,0.0000997,0.950863202,0.342414563,pos,ns,-0.01085943,0.029208201,-0.371793868,0.710300332,neg,ns,0.148557982,0.0000429,0.001004468,0.042660503,0.965999629,pos,ns,0.700290621,Cnot1,Cnot1_Exon,8,95775323,95775372,95775371,95775372,50,+,CCACATGCGAAAATAGGCAGCGTAATAAATGCCTGTCTGCCTCAGGACCG,"Exon (Cnot1-202/Cnot1, exon 3 of 49)",8,95719451,95807462,88012,2,Cnot1-202,32090,Cnot1-202;Cnot1-201;Cnot1-203;Cnot1-216;Cnot1-217;Cnot1-207;Cnot1-209,Cnot1;Cnot1;Cnot1;Cnot1;Cnot1;Cnot1;Cnot1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,24,234594,ENSMUSG00000036550,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3127,cg24979496,-0.0000147,0.00000376,-3.920099898,0.000108982,loss,ns,0.00000608,0.00000639,0.950841101,0.342425766,pos,ns,-0.000244777,0.001872278,-0.13073757,0.896067709,neg,ns,0.047659173,-0.000155915,0.0000644,-2.421504998,0.016030069,neg,ns,0.94403862,Trpm3,Trpm3_Exon,19,22897484,22897533,22897484,22897485,50,+,CGAGAGTATCCAGGTTTCGGTTGGATCTATTTTAAGGTGAATTAATTAAC,"Exon (Trpm3-202/Trpm3, exon 13 of 25)",19,22139046,22995410,856365,1,Trpm3-218,758438,Trpm3-218;Trpm3-202;Trpm3-203;Trpm3-213;Trpm3-222;Trpm3-207;Trpm3-209;Trpm3-214;Trpm3-216;Trpm3-223;Trpm3-224;Trpm3-201;Trpm3-204;Trpm3-206;Trpm3-217,Trpm3;Trpm3;Trpm3;Trpm3;Trpm3;Trpm3;Trpm3;Trpm3;Trpm3;Trpm3;Trpm3;Trpm3;Trpm3;Trpm3;Trpm3,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,12,226025,ENSMUSG00000052387,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16853,cg04257609,0.000000226,0.00000137,0.164802043,0.869207206,gain,ns,-0.00000222,0.00000233,-0.950791635,0.342450841,neg,ns,0.00072021,0.000682989,1.05449723,0.292476489,pos,ns,0.533909039,0.000000508,0.0000235,0.02162338,0.982762294,pos,ns,0.955083198,Diaph3,Diaph3_Intron,14,86790533,86790582,86790533,86790534,50,+,CGGATAACTGAGAGTCAGCTGTGCACACATCTGTGGGTGTTTATAAACAT,"Intron (Diaph3-201/Diaph3, intron 25 of 27)",14,86655367,87141224,485858,2,Diaph3-201,350642,Diaph3-201;Diaph3-202;Diaph3-207;Diaph3-208,Diaph3;Diaph3;Diaph3;Diaph3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,11,56419,ENSMUSG00000022021,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26703,cg19821567,0.00000345,0.00000263,1.313295675,0.190054555,gain,ns,0.00000425,0.00000447,0.950766097,0.342463787,pos,ns,0.000710304,0.001308512,0.542833305,0.58763464,pos,ns,0.230892612,-0.00000346,0.000045,-0.076985802,0.938684503,neg,ns,0.955539995,Camta1,Camta1_Intron,4,151549205,151549254,151549205,151549206,50,+,CGGCATCATAAAGCAGATAATTTTACAGCTGGATGGTCTCCCTCTGATGT,"Intron (Camta1-211/Camta1, intron 4 of 24)",4,150917322,151861669,944348,2,Camta1-211,312415,Camta1-211;Camta1-202;Camta1-201;Camta1-210,Camta1;Camta1;Camta1;Camta1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,22,100072,ENSMUSG00000014592,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9218,cg15984556,-0.00000179,0.00000136,-1.31644414,0.188997489,loss,ns,0.0000022,0.00000232,0.950737228,0.342478422,pos,ns,0.002125627,0.000678281,3.133842121,0.001890356,pos,ns,2.723456342,-0.0000335,0.0000233,-1.434184522,0.152527552,neg,ns,0.966579486,Cadm1,Cadm1_Intron,9,47654845,47654894,47654845,47654846,50,-,CGGCTAGACATTAAAGTGACAGAACTTTCATTAACCTTGTCTAAAGTTTG,"Intron (Cadm1-204/Cadm1, intron 1 of 9)",9,47530173,47853385,323213,1,Cadm1-204,124672,Cadm1-204;Cadm1-209;Cadm1-206;Cadm1-202;Cadm1-203;Cadm1-207;Cadm1-205;Cadm1-211;Cadm1-210;Cadm1-208;Cadm1-201,Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,77,54725,ENSMUSG00000032076,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25538,cg02945397,-0.0000572,0.00000934,-6.122218532,2.79E-09,loss,yes,0.0000151,0.0000159,0.950696684,0.342498976,pos,ns,-0.003490652,0.004646836,-0.751189057,0.453108747,neg,ns,0.343797554,0.00000855,0.000159804,0.053481729,0.957382536,pos,ns,0.778031447,Ebf3,Ebf3_Intron,7,137202788,137202837,137202836,137202837,50,+,CTCCTATCATATCGCAAGACTTTTTACATGCCTTTCAATTTTAAGCAACG,"Intron (Ebf3-204/Ebf3, intron 11 of 15)",7,137193673,137314445,120773,2,Ebf3-204,111608,Ebf3-204;Ebf3-201;Ebf3-202;Ebf3-203;Ebf3-208;Ebf3-205,Ebf3;Ebf3;Ebf3;Ebf3;Ebf3;Ebf3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,62,84,13593,ENSMUSG00000010476,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17425,cg08224918,0.00000337,0.00000501,0.672011884,0.502076649,gain,ns,-0.00000809,0.00000851,-0.950690652,0.342502034,neg,ns,0.00294818,0.00249456,1.181843549,0.238173566,pos,ns,0.623106441,-0.000249387,0.0000858,-2.907021258,0.00391197,neg,ns,0.930637398,Ankrd17,Ankrd17_Exon,5,90232275,90232324,90232323,90232324,50,-,ACATGCTGATGGAATGTACCAGAAGGAGTTACAATTCCTGTACTATCTCG,"Exon (Ankrd17-201/Ankrd17, exon 32 of 34)",5,90227166,90366577,139412,2,Ankrd17-201,134253,Ankrd17-201;Ankrd17-204;Ankrd17-203;Ankrd17-202;Ankrd17-205;Ankrd17-207,Ankrd17;Ankrd17;Ankrd17;Ankrd17;Ankrd17;Ankrd17,0;0;0;0;0;7364,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,11,12,81702,ENSMUSG00000055204,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12811,cg00190912,-0.00000305,0.00000151,-2.018762397,0.044372583,loss,ns,-0.00000244,0.00000257,-0.950666381,0.342514338,neg,ns,-0.000830879,0.000753155,-1.103198597,0.270796585,neg,ns,0.567356817,-0.0000134,0.0000259,-0.515435249,0.606616276,neg,ns,0.97027645,Tln2,Tln2_Exon,9,67227064,67227113,67227064,67227065,50,-,CGCTCCAACAGGAGTATTTTCCCACCAGCATCAGTGACCATTACCTGTAG,"Exon (Tln2-202/Tln2, exon 56 of 58)",9,67217087,67559703,342617,2,Tln2-202,332590,Tln2-202;Tln2-209;Tln2-204;Tln2-207;Tln2-205;Tln2-201;Tln2-208,Tln2;Tln2;Tln2;Tln2;Tln2;Tln2;Tln2,0;0;0;0;0;0;4294,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,70549,ENSMUSG00000052698,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25481,cg17906971,0.000012,0.00000897,1.336568564,0.182343628,gain,ns,0.0000145,0.0000152,0.950532715,0.342582109,pos,ns,-0.00115232,0.004463783,-0.258148795,0.796463372,neg,ns,0.098834192,0.000155039,0.000153509,1.009968778,0.313297901,pos,ns,0.80751152,Plp1,Plp1_Exon,X,136832060,136832109,136832108,136832109,50,-,TCTTTGGCGACTACAAGACCACCATCTGCGGCAAGGGCCTGAGCGCAACG,"Exon (Plp1-201/Plp1, exon 3 of 7)",20,136822671,136839733,17063,1,Plp1-201,9389,Plp1-201;Plp1-202;Plp1-203;Plp1-204,Plp1;Plp1;Plp1;Plp1,0;0;0;-1142,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,8,18823,ENSMUSG00000031425,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22034,cg15545854,0.0000245,0.00000347,7.064637172,1.07E-11,gain,yes,-0.0000056,0.00000589,-0.950462289,0.34261782,neg,ns,0.006567642,0.001725771,3.805627931,0.000170424,pos,ns,3.768468387,-0.000158875,0.0000593,-2.676956872,0.007824845,neg,ns,0.031269628,Elavl4,Elavl4_Intron,4,110285495,110285544,110285543,110285544,50,+,TGTGTTCTCATGATAGCCACCTGCTCCCTACTCGGCTTCTCCTCTGTTCG,"Intron (Elavl4-204/Elavl4, intron 1 of 6)",4,110203722,110287527,83806,2,Elavl4-204,1983,Elavl4-204;Elavl4-201;Elavl4-203;Elavl4-202;Elavl4-205;Elavl4-206;Elavl4-207;Elavl4-208;Elavl4-212;Elavl4-209,Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,36,15572,ENSMUSG00000028546,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20862,cg00060304,0.0000333,0.00000758,4.392248253,0.0000154,gain,ns,-0.0000122,0.0000129,-0.950446138,0.34262601,neg,ns,0.004793222,0.003772116,1.270698422,0.204788717,pos,ns,0.688693975,0.0000183,0.000129723,0.140819394,0.88810408,pos,ns,0.155129051,Pax6,Pax6_Intron,2,105671196,105671245,105671196,105671197,50,+,CGCATTGAGCCCCTTAGTGCCTTGATTAACAGGCAGATTAACTCTTACTG,"Intron (Pax6-206/Pax6, intron 1 of 12)",2,105668900,105697364,28465,1,Pax6-206,2296,Pax6-206;Pax6-207;Pax6-210;Pax6-214;Pax6-208;Pax6-217;Pax6-226;Pax6-220;Pax6-202;Pax6-205;Pax6-225;Pax6-204;Pax6-201;Pax6-203,Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,78,18508,ENSMUSG00000027168,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
26723,cg11921156,-0.000000627,0.00000484,-0.129409826,0.897117297,loss,ns,0.00000782,0.00000823,0.950375444,0.342661859,pos,ns,0.002147722,0.002410874,0.890847875,0.37370166,pos,ns,0.427474973,-0.0000627,0.0000829,-0.756547843,0.449895363,neg,ns,0.516610861,Huwe1,Huwe1_Exon,X,151904355,151904404,151904355,151904356,50,-,CGAGCCTGGGGAAGCAGAAGTGCAGGAGGAGGATCATGATGTCACTCAGA,"Exon (Huwe1-201/Huwe1, exon 50 of 83)",20,151803327,151935417,132091,1,Huwe1-201,101028,Huwe1-201;Huwe1-202;Huwe1-219;Huwe1-208;Huwe1-215,Huwe1;Huwe1;Huwe1;Huwe1;Huwe1,0;0;0;-4441;-4441,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,22,28,59026,ENSMUSG00000025261,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14149,cg06455702,0.0000393,0.00000403,9.76274345,8.31E-20,gain,yes,-0.0000065,0.00000685,-0.950231928,0.342734644,neg,ns,0.004259578,0.002005539,2.1239066,0.034469472,pos,ns,1.462565366,-0.0000672,0.000069,-0.974656077,0.330490811,neg,ns,0.03895364,Hoxd9,Hoxd9_Exon,2,74699205,74699254,74699205,74699206,50,+,CGCTCGCTCCACCCGGAAAAAGCGCTGTCCCTACACCAAATACCAGACGC,"Exon (Hoxd9-201/Hoxd9, exon 2 of 2)",2,74697727,74700208,2482,1,Hoxd9-201,1478,Hoxd10-201;Hoxd9-201,Hoxd10;Hoxd9,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,8,15438,ENSMUSG00000043342,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
25549,cg20753760,0.0000936,0.0000131,7.131127961,7.05E-12,gain,yes,-0.0000212,0.0000223,-0.950091122,0.342806065,neg,ns,0.018936045,0.006529237,2.900192807,0.003995875,pos,ns,2.398388085,-0.000583182,0.00022454,-2.597230863,0.009846113,neg,ns,0.237308941,Ebf3,Ebf3_Intron,7,137208754,137208803,137208754,137208755,50,+,CGTCCAGTCACAGAGCCCCGAGCCAGGCCAATCAATACCACTTTCCTGTT,"Intron (Ebf3-204/Ebf3, intron 10 of 15)",7,137193673,137314445,120773,2,Ebf3-204,105642,Ebf3-204;Ebf3-201;Ebf3-202;Ebf3-203;Ebf3-208;Ebf3-205,Ebf3;Ebf3;Ebf3;Ebf3;Ebf3;Ebf3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,62,84,13593,ENSMUSG00000010476,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3841,cg10251444,0.0000092,0.00000497,1.849869885,0.065283858,gain,ns,0.00000802,0.00000845,0.94989437,0.342905878,pos,ns,-0.008460505,0.00247434,-3.419297576,0.00071184,neg,ns,3.147617706,0.000252114,0.0000851,2.962824811,0.003284246,pos,ns,0.772659039,Dmrt1,Dmrt1_Intron,19,25568374,25568423,25568422,25568423,50,+,CAATGATGAAGCTTGTCATGCATCTTTCACCATTCATCATCCAGGTGCCG,"Intron (Dmrt1-201/Dmrt1, intron 4 of 4)",19,25505618,25604329,98712,1,Dmrt1-201,62756,Dmrt1-201;Dmrt1-202,Dmrt1;Dmrt1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,9,50796,ENSMUSG00000024837,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1979,cg07619656,-0.0000138,0.00000463,-2.973832722,0.003171881,loss,ns,-0.00000747,0.00000786,-0.949885997,0.342910126,neg,ns,-0.004722604,0.002302498,-2.051077919,0.041099585,neg,ns,1.386162559,0.0000911,0.0000792,1.150377631,0.250874986,pos,ns,0.905985489,Gm7537,Gm7537_Intergenic_upstream,13,16762866,16762915,16762866,16762867,50,+,CGAATCTAATGAGAATCAGACAGAAGGCCTAATGAGACATTTAACATGCT,Distal Intergenic,13,16638077,16639490,1414,2,Gm7537-201,-123376,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,6,665191,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25575,cg08990681,0.00000464,0.00000355,1.305474396,0.192699398,gain,ns,-0.00000574,0.00000604,-0.949745515,0.342981406,neg,ns,-0.002692689,0.00176914,-1.522032857,0.129020216,neg,ns,0.889342234,-0.0000318,0.0000608,-0.522724542,0.601539333,neg,ns,0.907611584,Ebf3,Ebf3_Intron,7,137252955,137253004,137252955,137252956,50,+,CGTAATGTGGGACTTTGTAATGGCATCATTTGGAGTCAAGTCACAGATGC,"Intron (Ebf3-204/Ebf3, intron 6 of 15)",7,137193673,137314445,120773,2,Ebf3-204,61441,Ebf3-204;Ebf3-201;Ebf3-202;Ebf3-203;Ebf3-208;Ebf3-205,Ebf3;Ebf3;Ebf3;Ebf3;Ebf3;Ebf3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,62,84,13593,ENSMUSG00000010476,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7293,cg13666700,-0.0000234,0.00000916,-2.554737012,0.011104395,loss,ns,0.0000148,0.0000156,0.949706383,0.343001263,pos,ns,0.00202893,0.004559735,0.444966584,0.65665443,pos,ns,0.182663121,-0.000323588,0.000156809,-2.063583481,0.039889334,neg,ns,0.290037477,Gm7899,Gm7899_Intergenic_upstream,3,42154645,42154694,42154693,42154694,50,-,CAAAAGTGCTCCATTAACAGTGTGAGTCTTTTATTTAGGTAATTCACACG,Distal Intergenic,3,41976152,41978048,1897,2,Gm7899-201,-176646,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,666031,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15396,cg17040202,-0.00000353,0.00000232,-1.519121051,0.129751228,loss,ns,-0.00000375,0.00000395,-0.949642054,0.343033907,neg,ns,0.000400418,0.001156682,0.346178311,0.729443546,pos,ns,0.137008314,-0.0000393,0.0000398,-0.988443111,0.323706544,neg,ns,0.958533787,Gria2,Gria2_Intron,3,80690642,80690691,80690642,80690643,50,-,CGGTAAGATTTGCAGAGCCAAATGAGCATTAATGTATCGCTGGAAGTAAC,"Intron (Gria2-201/Gria2, intron 14 of 15)",3,80681450,80802835,121386,2,Gria2-201,112144,Gria2-201;Gria2-202;Gria2-203;Gria2-206,Gria2;Gria2;Gria2;Gria2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,19,14800,ENSMUSG00000033981,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16652,cg22449107,0.0000157,0.00000344,4.566605979,0.00000716,gain,ns,-0.00000554,0.00000584,-0.949445477,0.343133675,neg,ns,0.00001,0.001710179,0.005860249,0.995327994,pos,ns,0.002033781,0.0000681,0.0000588,1.158462712,0.247566919,pos,ns,0.074666278,Tbx2,Tbx2_fiveUTR,11,85832784,85832833,85832784,85832785,50,-,CGAGCTGGGCAGGACATGTGAGATAGTCACAGTTTTCCAGAGATCACGAC,Promoter (<=1kb),11,85832551,85841948,9398,1,Tbx2-201,233,Tbx2-201,Tbx2,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,12,14,21385,ENSMUSG00000000093,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
24348,cg25785974,0.00000954,0.0000117,0.816449125,0.414870253,gain,ns,0.0000188,0.0000198,0.949421484,0.343145853,pos,ns,0.01228973,0.005815035,2.113440403,0.035361807,pos,ns,1.451465552,-0.0000934,0.000199979,-0.467089769,0.64076378,neg,ns,0.508869377,Glud-ps,Glud-ps_Intron,7,124704622,124704671,124704670,124704671,50,-,GCAGTTGTGTTATAAAATTATCACTTTACCCACGCAAATGGGCCAGAGCG,"Intron (3100003L05Rik-201/3100003L05Rik-201, intron 1 of 3)",7,125075351,125076007,657,1,Glud-ps-201,-370729,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,3,104277,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20921,cg19718154,0.0000454,0.00000835,5.439656735,0.000000109,gain,yes,-0.0000135,0.0000142,-0.949112311,0.343302807,neg,ns,0.010424723,0.004154756,2.50910613,0.012613606,pos,ns,1.899160748,-0.000166972,0.000142882,-1.168603557,0.243461264,neg,ns,0.114453689,Pax6,Pax6_Intron,2,105690198,105690247,105690198,105690199,50,+,CGCTATTCAAGTGTTGGTGGTCATCTCAATAGATCTCCAAGGGCCCATAT,"Intron (Pax6-206/Pax6, intron 7 of 12)",2,105668900,105697364,28465,1,Pax6-206,21298,Pax6-206;Pax6-207;Pax6-210;Pax6-208;Pax6-202;Pax6-205;Pax6-225;Pax6-204;Pax6-201;Pax6-203;Pax6-224;Pax6-219;Pax6-213;Pax6-211;Pax6-222;Pax6-212;Pax6-215;Pax6-223;Pax6-216;Pax6-218,Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;-2236,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,78,18508,ENSMUSG00000027168,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
20650,cg17805576,0.0000159,0.00000529,3.01312394,0.002798918,gain,ns,-0.00000852,0.00000898,-0.9490703,0.343324137,neg,ns,-0.003924699,0.002630993,-1.491717372,0.136790153,neg,ns,0.863945165,0.00021854,0.0000905,2.415354479,0.016298126,pos,ns,0.9058601,Mapt,Mapt_Exon,11,104318183,104318232,104318231,104318232,50,-,TCTTAGCAACGTCCAGTCCAAGTGTGGCTCAAAGGATAATATCAAACACG,"Exon (Mapt-204/Mapt, exon 7 of 10)",11,104231390,104332090,100701,1,Mapt-204,86793,Mapt-204;Mapt-205;Mapt-201;Mapt-202;Mapt-203;Mapt-210;Mapt-206,Mapt;Mapt;Mapt;Mapt;Mapt;Mapt;Mapt,0;0;0;0;0;0;-3717,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,17762,ENSMUSG00000018411,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8055,cg27147919,-0.00000416,0.0000114,-0.365495083,0.714991136,loss,ns,-0.0000183,0.0000193,-0.949003267,0.343358175,neg,ns,0.000614898,0.005659239,0.108653909,0.913547295,pos,ns,0.039268964,0.000208516,0.000194621,1.071398126,0.284823858,pos,ns,0.319419965,Phldb1,Phldb1_Exon,9,44708403,44708452,44708451,44708452,50,-,CTGCTCCTGTAACTGTTCCCGCACTGACTCGGGGCAGTTATCGAGCTGCG,Promoter (<=1kb),9,44703573,44708427,4855,2,Phldb1-203,0,Phldb1-214;Phldb1-213;Phldb1-218;Phldb1-207;Phldb1-212;Phldb1-201;Phldb1-215;Phldb1-210;Phldb1-204;Phldb1-217;Phldb1-203,Phldb1;Phldb1;Phldb1;Phldb1;Phldb1;Phldb1;Phldb1;Phldb1;Phldb1;Phldb1;Phldb1,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,102693,ENSMUSG00000048537,conserved gene and region,9,44708422,44708705,284,*,284,25,0.690140845,0.771403738,0.088028169,6.38E-18,CpGisland,TRUE,NA,NRS
26261,cg05589441,0.0000405,0.0000195,2.079681026,0.038376299,gain,ns,-0.0000314,0.0000331,-0.948953552,0.34338342,neg,ns,0.04025942,0.009682669,4.157884542,0.0000416,pos,ns,4.380725228,-0.001056491,0.000332986,-3.172777739,0.001661246,neg,ns,0.340503044,Rin2,Rin2_threeUTR,2,145860380,145860429,145860380,145860381,50,-,CGAGCATGCCAGAAACAGTCAACCATAACAAACATGGGAACGTAGCTCTG,3' UTR,2,145785980,145887616,101637,1,Rin2-202,74400,Rin2-202;Rin2-201;Rin2-208;Rin2-207,Rin2;Rin2;Rin2;Rin2,0;0;0;-2215,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,4,74030,ENSMUSG00000001768,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
24728,cg10588150,0.0000153,0.00000308,4.97935658,0.00000106,gain,yes,-0.00000497,0.00000524,-0.948948696,0.343385886,neg,ns,0.00209683,0.001533891,1.367000608,0.17261558,pos,ns,0.762920008,-0.0000464,0.0000528,-0.879910254,0.379589524,neg,ns,0.044971667,Csmd2,Csmd2_Exon,4,127987867,127987916,127987867,127987868,50,-,CGCGCCTCTCCCCGGCCGGGCGGACACTTGGTTCATTCCAGCCGCAGAAG,Promoter (<=1kb),4,127987857,128339657,351801,1,Csmd2-201,10,Csmd2-201;Csmd2-203;Csmd2-205,Csmd2;Csmd2;Csmd2,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,9,329942,ENSMUSG00000028804,conserved gene but different region,4,127987731,127987958,228,*,228,26,0.679824561,1.009193054,0.114035088,1.06E-21,CpGisland,TRUE,U13,Hc-P
2005,cg11952379,-0.0000027,0.00000121,-2.22240818,0.026977067,loss,ns,-0.00000196,0.00000206,-0.948915415,0.343402786,neg,ns,-0.000546028,0.000604106,-0.903862451,0.366770185,neg,ns,0.435605976,-0.0000354,0.0000208,-1.70511807,0.089174197,neg,ns,0.01727731,Ppp5c,Ppp5c_fiveUTR,7,17027795,17027844,17027795,17027796,50,+,CGCCCTCCGCCATCGCCATGCCGCAAAGCGACCCCTACCCTGGCAACGGC,Promoter (<=1kb),7,17004753,17027809,23057,2,Ppp5c-205,0,Hif3a-202;Ppp5c-201;Ppp5c-205;Ppp5c-204;Ppp5c-211;Ppp5c-203;Ppp5c-209;Ppp5c-207,Hif3a;Ppp5c;Ppp5c;Ppp5c;Ppp5c;Ppp5c;Ppp5c;Ppp5c,34583;0;0;0;0;-3049;-180;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,2,19060,ENSMUSG00000003099,conserved gene and region,7,17027535,17028038,504,*,504,53,0.720238095,0.84312859,0.10515873,1.01E-41,CpGisland,TRUE,U1,Pr-A
23219,cg07440924,0.0000333,0.0000101,3.305830202,0.001058101,gain,ns,0.0000162,0.0000171,0.948812508,0.343455048,pos,ns,0.008207037,0.005009686,1.638233721,0.102387484,pos,ns,0.989753129,-0.000301167,0.000172283,-1.748100324,0.081436627,neg,ns,0.769625495,Xylt1,Xylt1_Intron,7,117501876,117501925,117501876,117501877,50,-,CGCATTGTTCTTTAATTAGCTGTTGTAATTGTTTTAGTCTAATCTCCGTG,"Intron (Xylt1-202/Xylt1, intron 2 of 6)",7,117380979,117635185,254207,1,Xylt1-202,120897,Xylt1-202;Xylt1-201;Xylt1-203,Xylt1;Xylt1;Xylt1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,6,233781,ENSMUSG00000030657,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10776,cg27354082,-0.00000423,0.0000134,-0.316274868,0.752006736,loss,ns,0.0000216,0.0000227,0.948722319,0.343500855,pos,ns,0.009626225,0.006659833,1.445415386,0.149351371,pos,ns,0.825790786,-0.000526116,0.000229031,-2.297139009,0.022277013,neg,ns,0.710046272,Vti1a,Vti1a_Exon,19,55380995,55381044,55381043,55381044,50,-,TGATGGGAATTCCTCAGAGAACCAGGTAGAATGCTAATCAGGAAGGCCCG,Promoter (<=1kb),19,55381014,55446979,65966,1,Vti1a-203,0,Vti1a-206;Vti1a-205;Vti1a-202;Vti1a-201;Vti1a-203,Vti1a;Vti1a;Vti1a;Vti1a;Vti1a,0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,32,53611,ENSMUSG00000024983,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19150,cg12865174,-0.00000158,0.00000093,-1.695561674,0.090972961,loss,ns,0.0000015,0.00000158,0.948624513,0.343550535,pos,ns,0.0000212,0.000462869,0.045804406,0.963495639,pos,ns,0.016150247,0.0000206,0.0000159,1.296808255,0.195661572,pos,ns,0.030729043,Emsy,Emsy_fiveUTR,7,98656487,98656536,98656487,98656488,50,+,CGGGGCTCATCTAAAAGGCTCCTCCGCCAAGACTAGGGGACACCAGGAAT,Promoter (<=1kb),7,98587137,98656779,69643,2,Emsy-202,243,Emsy-202;Emsy-207;Emsy-201;Emsy-211;Emsy-210;Emsy-209,Emsy;Emsy;Emsy;Emsy;Emsy;Emsy,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,16,233545,ENSMUSG00000035401,conserved gene and region,7,98656479,98656653,175,*,175,16,0.611428571,0.988700565,0.091428571,6.88E-12,CpGisland,TRUE,U1,Pr-A
22744,cg03152762,-0.0000022,0.00000793,-0.27697475,0.781984087,loss,ns,-0.0000128,0.0000135,-0.948613844,0.343555954,neg,ns,-0.005347717,0.003949187,-1.354131288,0.176680768,neg,ns,0.752810721,-0.000185781,0.000135812,-1.367924704,0.172326402,neg,ns,0.846182972,Meis2,Meis2_Intron,2,115898568,115898617,115898568,115898569,50,+,CGGTTTGACAGGTGGGCAGGTCTTGATAATTATGGCCAGACATCTTAACA,"Intron (Meis2-201/Meis2, intron 9 of 11)",2,115863064,116065047,201984,2,Meis2-201,166430,Meis2-201;Meis2-203;Meis2-205;Meis2-206;Meis2-204;Meis2-202;Meis2-216,Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,45,97,17536,ENSMUSG00000027210,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2926,cg17310766,0.0000278,0.0000111,2.505844946,0.012728149,gain,ns,0.0000179,0.0000189,0.948586724,0.34356973,pos,ns,0.007037496,0.005529394,1.272742596,0.204063105,pos,ns,0.69023551,-0.00000402,0.000190155,-0.021145657,0.983143068,neg,ns,0.52166446,Gm11880,Gm11880_Intergenic_downstream,4,22067236,22067285,22067284,22067285,50,-,CAGGCTTATTAATTTCATGCCAAGTGCTGGAGGCGTGAATGTAGAGAACG,Distal Intergenic,4,22117134,22117532,399,2,Gm11880-201,50296,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,11,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23515,cg23068476,-0.0000035,0.00000151,-2.315780213,0.021222566,loss,ns,-0.00000243,0.00000257,-0.948581465,0.343572402,neg,ns,-0.001712279,0.000751768,-2.277667803,0.023427012,neg,ns,1.630283105,0.0000415,0.0000259,1.604934566,0.109526416,pos,ns,0.973067216,Cacna1c,Cacna1c_Exon,6,118742266,118742315,118742266,118742267,50,-,CGCTCAACACACCGAGAACCAGATTTAGAACGAAAAAGGATCCAAAGATG,"Exon (Cacna1c-207/Cacna1c, exon 8 of 47)",6,118587240,119196231,608992,2,Cacna1c-207,453916,Cacna1c-207;Cacna1c-205;Cacna1c-215;Cacna1c-224;Cacna1c-225;Cacna1c-226;Cacna1c-227;Cacna1c-202;Cacna1c-201;Cacna1c-203;Cacna1c-212;Cacna1c-216;Cacna1c-210;Cacna1c-206;Cacna1c-208;Cacna1c-213;Cacna1c-217;Cacna1c-219;Cacna1c-220;Cacna1c-209;Cacna1c-204;Cacna1c-214;Cacna1c-222,Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,13,15,12288,ENSMUSG00000051331,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
157,cg16448185,0.0000441,0.000012,3.659275253,0.000297175,gain,ns,-0.0000194,0.0000205,-0.94843774,0.343645417,neg,ns,-0.00133721,0.005997105,-0.222975887,0.823701122,neg,ns,0.084230342,0.000078,0.00020624,0.378285092,0.70547773,pos,ns,0.703873119,Gria4,Gria4_Exon,9,4427022,4427071,4427022,4427023,50,-,CGACTGACCTTGCTTCCAGAGTCCTTGGGTCCACATTCACCTTTATCGTA,"Exon (Gria4-202/Gria4, exon 15 of 17)",9,4417896,4796142,378247,2,Gria4-202,369071,Gria4-202;Gria4-204;Gria4-201,Gria4;Gria4;Gria4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,16,18,14802,ENSMUSG00000025892,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25380,cg27195978,0.0000112,0.00000273,4.099980341,0.0000528,gain,ns,0.0000044,0.00000464,0.948422974,0.34365292,pos,ns,0.003302068,0.00135912,2.429563551,0.015684753,pos,ns,1.80452233,-0.000100647,0.0000467,-2.153344466,0.032062586,neg,ns,0.036375729,Id3,Id3_Promoter,4,136140542,136140591,136140542,136140543,50,+,CGCCAGGCTGTCTGGGGCTGAGTCTTAGATCAACACAGCTGTGGGACCGG,Promoter (2-3kb),4,136143497,136145392,1896,1,Id3-201,-2906,Id3-201;Id3-203;Id3-202,Id3;Id3;Id3,-2906;-3273;-4383,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,9,9,15903,ENSMUSG00000007872,conserved gene and region,4,136140358,136140543,186,*,186,17,0.661290323,0.836065574,0.09139785,1.32E-12,CpGisland,TRUE,NA,NRS
6953,cg07720979,0.00000192,0.00000349,0.551173964,0.581911453,gain,ns,-0.00000562,0.00000593,-0.948339393,0.343695386,neg,ns,-0.001940974,0.001737205,-1.117296899,0.264732574,neg,ns,0.577192617,-0.0000802,0.0000597,-1.34218995,0.180516559,neg,ns,0.889463816,Olfr981,Olfr981_Exon,9,40022506,40022555,40022554,40022555,50,+,ACTGTTTCTGGAAATGGGCTCATCATCCTCACTGTCTTAGTGGACATCCG,"Exon (Olfr981-202/Olfr981, exon 2 of 2)",9,40021464,40030377,8914,1,Olfr981-202,1042,Olfr981-202;Olfr981-203;Olfr981-204;Olfr981-201,Olfr981;Olfr981;Olfr981;Olfr981,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,258283,ENSMUSG00000046678,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15105,cg26739897,0.00000763,0.0000104,0.73413233,0.463422985,gain,ns,-0.0000167,0.0000177,-0.94789529,0.343921084,neg,ns,-0.000487946,0.005171097,-0.094360268,0.924883937,neg,ns,0.033912763,-0.000445909,0.000177834,-2.507451652,0.012671601,neg,ns,0.779274586,Gm14465,Gm14465_Intergenic_upstream,2,79188926,79188975,79188974,79188975,50,+,ATGAAGATGTCAAGGCTCAGATCCAGCCAGTGCCAAATGTCTTCACAGCG,Distal Intergenic,2,79161029,79161595,567,2,Gm14465-201,-27331,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,2,100040526,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19652,cg12728473,0.0000102,0.00000377,2.719695949,0.006902669,gain,ns,-0.00000607,0.0000064,-0.947888767,0.343924399,neg,ns,0.002210168,0.00187569,1.178322987,0.239571567,pos,ns,0.620564727,-0.0000791,0.0000645,-1.225983175,0.2211355,neg,ns,0.075057998,Klf12,Klf12_fiveUTR,14,100284247,100284296,100284247,100284248,50,+,CGGCACAGACCTGAACAGAAGCTGCAGAGCAGGAGAAATTGTTTTCTTTC,Promoter (<=1kb),14,99870632,100284679,414048,2,Klf12-205,383,Klf12-205;Klf12-204;Klf12-203,Klf12;Klf12;Klf12,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,6,11,16597,ENSMUSG00000072294,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
1489,cg07442023,-0.00000279,0.00000126,-2.21929733,0.027190107,loss,ns,0.00000202,0.00000214,0.947789624,0.343974798,pos,ns,0.0000582,0.000625615,0.09302453,0.925944164,pos,ns,0.033415201,2.45E-08,0.0000215,0.001138159,0.999092613,pos,ns,0.963699241,Gm11819,Gm11819_Intergenic_upstream,4,13248594,13248643,13248594,13248595,50,+,CGCCATACGGGACTCAGTGTGGCCACTGCAATATAACCAGTAAGTAACAC,Distal Intergenic,4,13444770,13445141,372,1,Gm11819-201,-196127,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,19,22,,NA,mapped to different genes,4,13248547,13248714,168,*,168,12,0.535714286,0.997525977,0.071428571,8.86E-08,CpGisland,TRUE,U15,NS
8195,cg26127955,-0.00000115,0.00000181,-0.634540267,0.526196294,loss,ns,0.00000291,0.00000307,0.947519004,0.344112391,pos,ns,0.002252608,0.000899324,2.504779543,0.012765769,pos,ns,1.893953021,-0.0000759,0.0000309,-2.454423081,0.014660574,neg,ns,0.958297284,Ebf1,Ebf1_Intron,11,44845455,44845504,44845503,44845504,50,-,TCACTGCCTAGCTGTTGTAGAGTGGGCCAGAACATCATTTGTTAACGGCG,"Intron (Ebf1-203/Ebf1, intron 6 of 15)",11,44617317,45004995,387679,1,Ebf1-203,228138,Ebf1-203;Ebf1-202;Ebf1-201,Ebf1;Ebf1;Ebf1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,80,13591,ENSMUSG00000057098,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8317,cg26551777,0.00000959,0.0000163,0.5888678,0.556378796,gain,ns,-0.0000262,0.0000277,-0.947082578,0.344334359,neg,ns,0.031460807,0.008103248,3.882493486,0.000126374,pos,ns,3.898343074,-0.000799961,0.00027867,-2.870637347,0.004378303,neg,ns,0.752620994,Zeb2,Zeb2_Exon,2,45001706,45001755,45001754,45001755,50,+,TGGCGGTACTTGATGTGCTCCTTCAGTGATGTCAAGCGCTTGTAGCCCCG,"Exon (Zeb2-212/Zeb2, exon 7 of 11)",2,44983632,45117395,133764,2,Zeb2-212,115640,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-227;Zeb2-216;Zeb2-229;Zeb2-218;Zeb2-222,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,21,158,24136,ENSMUSG00000026872,conserved gene but different region,2,45001704,45001759,56,*,56,7,0.607142857,1.375438597,0.125,0.00000289,CpGisland,TRUE,U12,Tr-I
9196,cg06282832,0.000000335,0.00000519,0.064482622,0.948627504,gain,ns,-0.00000835,0.00000881,-0.946930089,0.344411937,neg,ns,-0.005235698,0.002581975,-2.027787988,0.043436927,neg,ns,1.362140908,0.0000732,0.0000888,0.824297194,0.410404475,pos,ns,0.899408338,Cadm1,Cadm1_Intergenic_upstream,9,47506239,47506288,47506239,47506240,50,-,CGGAGCCTAATTCATGATGCATGAACGCATTGATCTTCTTGGCTCTGAAA,Distal Intergenic,9,47530173,47853385,323213,1,Cadm1-204,-23934,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,18,77,54725,ENSMUSG00000032076,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10643,cg08629101,0.0000749,0.0000053,14.13635298,2.33E-35,gain,yes,-0.00000852,0.000009,-0.946735739,0.344510828,neg,ns,-0.002046634,0.002636944,-0.776138511,0.438258947,neg,ns,0.358269209,0.0000298,0.0000907,0.328835551,0.742502023,pos,ns,0.161328182,Slc7a8,Slc7a8_Exon,14,54781186,54781235,54781234,54781235,50,-,TGATACCACAGGCACTGACCAATCCGATCTCTTTCTTCAGGGCTACTCCG,Promoter (<=1kb),14,54722209,54781930,59722,2,Slc7a8-201,695,Slc7a8-201;Slc7a8-202,Slc7a8;Slc7a8,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,50934,ENSMUSG00000022180,conserved gene and region,14,54781104,54781527,424,*,424,28,0.551886793,0.869552479,0.066037736,1.44E-16,CpGisland,TRUE,U3,Pr-B
16769,cg00555070,-0.00000262,0.00000199,-1.316905598,0.188842926,loss,ns,-0.0000032,0.00000338,-0.946726199,0.344515683,neg,ns,-0.001360197,0.00099167,-1.371622035,0.171173036,neg,ns,0.766564647,-0.0000138,0.0000341,-0.403426447,0.686912652,neg,ns,0.958754488,Tbc1d22a,Tbc1d22a_Intron,15,86494754,86494803,86494754,86494755,50,+,CGAAGTGGATTAAAAATAAAACCAAAGGTATTTATTTATGACCTGCTCAG,"Intron (Tbc1d22a-201/Tbc1d22a, intron 12 of 12)",15,86214459,86498503,284045,1,Tbc1d22a-201,280295,Tbc1d22a-201,Tbc1d22a,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,3,223754,ENSMUSG00000051864,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7659,cg06690459,0.00000023,0.000000316,0.729765095,0.466084846,gain,ns,0.000000508,0.000000536,0.946493938,0.344633889,pos,ns,-0.000132121,0.000157104,-0.840976639,0.40100923,neg,ns,0.396845632,0.00000421,0.0000054,0.778892375,0.436637267,pos,ns,0.993156213,Zbtb20,Zbtb20_Exon,16,43609394,43609443,43609394,43609395,50,+,CGTGCTCGAGACCCTCAACGAGCAGCGCAACCGTGGCCACTTCTGTGACG,"Exon (Zbtb20-204/Zbtb20, exon 14 of 15)",16,42907652,43642602,734951,1,Zbtb20-204,701742,Zbtb20-204;Zbtb20-215;Zbtb20-201;Zbtb20-203;Zbtb20-219;Zbtb20-216;Zbtb20-220;Zbtb20-202;Zbtb20-205,Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,17,98,56490,ENSMUSG00000022708,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25752,cg16918753,-0.000000225,0.00000137,-0.164559923,0.869397626,loss,ns,0.0000022,0.00000232,0.946457668,0.344652351,pos,ns,0.000180135,0.000681075,0.264486435,0.791580873,pos,ns,0.101504708,6.56E-08,0.0000234,0.002798896,0.997768607,pos,ns,0.966152412,Ubr4,Ubr4_Exon,4,139416872,139416921,139416920,139416921,50,-,ATCATGATGGCAACAGCCAATGAGAACCTCTCTGCTAAATTCTGTAACCG,"Exon (Ubr4-212/Ubr4, exon 31 of 106)",4,139352609,139469763,117155,1,Ubr4-210,64263,Ubr4-210;Ubr4-212;Ubr4-201;Ubr4-203;Ubr4-211,Ubr4;Ubr4;Ubr4;Ubr4;Ubr4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,10,69116,ENSMUSG00000066036,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5506,cg25438995,-0.00000147,0.00000233,-0.630709716,0.528695036,loss,ns,-0.00000375,0.00000396,-0.946439882,0.344661404,neg,ns,-0.001373419,0.001161191,-1.182768175,0.237807363,neg,ns,0.623774704,0.0000382,0.0000399,0.956645165,0.339491819,pos,ns,0.923429913,Pbx3,Pbx3_Intergenic_downstream,2,34136545,34136594,34136593,34136594,50,-,TACTCAAATTCTTTAAAGGTGATATTTCATAAAATATACCCGGCCTGCCG,Distal Intergenic,2,34172873,34288852,115980,2,Pbx3-210,152307,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,82,18516,ENSMUSG00000038718,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16145,cg04593944,0.000105402,0.0000108,9.724477386,1.11E-19,gain,yes,-0.0000174,0.0000184,-0.946086788,0.344841166,neg,ns,0.005029814,0.005394623,0.932375396,0.351868142,pos,ns,0.453620053,-0.000182385,0.000185521,-0.98310063,0.326324553,neg,ns,0.386553927,Bnc2,Bnc2_Intron,4,84527397,84527446,84527445,84527446,50,+,AATTTATAACGCTTCACCCTATACACTTGGATTATCTATCTGTGTCAGCG,"Intron (Bnc2-201/Bnc2, intron 3 of 7)",4,84275095,84675034,399940,2,Bnc2-201,147588,Bnc2-201;Bnc2-202;Bnc2-214;Bnc2-215;Bnc2-206;Bnc2-211;Bnc2-217;Bnc2-207;Bnc2-212;Bnc2-203;Bnc2-209;Bnc2-221;Bnc2-204;Bnc2-220;Bnc2-208,Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,91,242509,ENSMUSG00000028487,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24653,cg23678852,0.000114258,0.0000167,6.821776778,4.72E-11,gain,yes,-0.0000269,0.0000285,-0.946062059,0.344853758,neg,ns,0.05562421,0.00833617,6.672634117,1.16E-10,pos,yes,9.936791678,-0.003050605,0.00028668,-10.6411447,9.54E-23,neg,yes,0.477652162,R3hdm2,R3hdm2_threeUTR,10,127498653,127498702,127498653,127498654,50,+,CGAATGGCCAAAAAGAACTATGACCTGAGGATCCTGGAGCGAGCCAGCTC,3' UTR,10,127380662,127499360,118699,1,R3hdm2-212,117991,R3hdm2-212;R3hdm2-202;R3hdm2-204;R3hdm2-201;R3hdm2-218;R3hdm2-208;R3hdm2-210;R3hdm2-205;R3hdm2-203;R3hdm2-216;R3hdm2-213;R3hdm2-219;Stac3-202;Stac3-203;Stac3-201,R3hdm2;R3hdm2;R3hdm2;R3hdm2;R3hdm2;R3hdm2;R3hdm2;R3hdm2;R3hdm2;R3hdm2;R3hdm2;R3hdm2;Stac3;Stac3;Stac3,0;0;0;0;0;0;0;0;0;0;13171;0;0;-2992;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,8,71750,ENSMUSG00000025404,conserved gene but different region,10,127498508,127498693,186,*,186,13,0.61827957,0.740808824,0.069892473,2.81E-08,CpGisland,TRUE,U10,Tr-S
20120,cg01033833,0.000065,0.00000919,7.070116833,1.03E-11,gain,yes,-0.0000148,0.0000156,-0.945983368,0.344893829,neg,ns,0.006985077,0.00457307,1.527437168,0.127671985,pos,ns,0.893904389,-0.000250958,0.000157267,-1.595738523,0.111566089,neg,ns,0.052518947,Atp5g2,Atp5g2_Promoter,15,102672394,102672443,102672394,102672395,50,-,CGAGTTTAATTATCCTCGCGGAGGAATTTCAATGCGGCCAATCCATCTTG,Promoter (<=1kb),15,102665801,102672352,6552,2,Atp5g2-203,-91,Atp5g2-202;Atp5g2-201;Atp5g2-204;Atp5g2-203,Atp5g2;Atp5g2;Atp5g2;Atp5g2,-1267;-4645;-4651;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,10,18,67942,ENSMUSG00000062683,mapped to different genes,15,102672078,102672489,412,*,412,37,0.621359223,0.940117176,0.089805825,1.33E-26,CpGisland,TRUE,U1,Pr-A
13069,cg25762442,0.0000502,0.0000366,1.371268248,0.171283146,gain,ns,-0.0000588,0.0000621,-0.945939557,0.34491614,neg,ns,0.050536016,0.018202585,2.776309815,0.005832347,pos,ns,2.234156629,-0.002826755,0.000625985,-4.515687633,0.00000898,neg,ns,0.505699813,Chd3,Chd3_Exon,11,69361108,69361157,69361108,69361109,50,-,CGAGGTGGTAGGCACGAGGGCAGGTGTCACACAGAATAATTTCCCCACCC,"Exon (Chd3-202/Chd3, exon 8 of 40)",11,69343273,69369406,26134,2,Chd3-202,8249,Chd3-202;Chd3-201;Chd3-204;Chd3-209;Chd3-210;Chd3-207,Chd3;Chd3;Chd3;Chd3;Chd3;Chd3,0;0;0;-4498;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,22,26,216848,ENSMUSG00000018474,conserved gene and region,11,69361083,69361220,138,*,138,10,0.608695652,0.784090909,0.072463768,0.00000132,CpGisland,TRUE,U10,Tr-S
6453,cg03922726,-0.0000408,0.0000257,-1.586615195,0.113619279,loss,ns,0.0000413,0.0000437,0.94588929,0.344941739,pos,ns,0.008835448,0.01280547,0.689974541,0.490726397,pos,ns,0.30916058,-0.000567291,0.000440379,-1.28818796,0.198641214,neg,ns,0.24449997,Zfp536,Zfp536_Intron,7,37336857,37336906,37336857,37336858,50,-,CGTGTGTAATTAAAGTGAGGGTTGTTAGACTCTTCATTTAATAAAACACT,"Intron (Zfp536-211/Zfp536, intron 3 of 3)",7,37318024,37568390,250367,2,Zfp536-211,231484,Zfp536-211,Zfp536,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,73,112,243937,ENSMUSG00000043456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
23295,cg25654366,-0.0000103,0.00000278,-3.702651393,0.000252486,loss,ns,-0.00000446,0.00000472,-0.945836402,0.344968675,neg,ns,-0.002048349,0.001382804,-1.48130111,0.139542045,neg,ns,0.855294916,0.0000505,0.0000476,1.062095971,0.289018818,pos,ns,0.94283689,Eri3,Eri3_Intron,4,117658079,117658128,117658079,117658080,50,+,CGCGTTGTAATTGTGAACAAGCTGTAATGTTTAATTAGTCTGTAAATGAA,"Intron (Eri3-201/Eri3, intron 8 of 8)",4,117550365,117674297,123933,1,Eri3-201,107714,Eri3-201;Eri3-206;Eri3-203,Eri3;Eri3;Eri3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,82,97,140546,ENSMUSG00000033423,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17522,cg27028049,-0.0000136,0.00000594,-2.285758904,0.022942997,loss,ns,0.00000954,0.0000101,0.945660114,0.345058468,pos,ns,-0.001661154,0.002955745,-0.56200837,0.574516433,neg,ns,0.240697544,-0.0000108,0.000101648,-0.105970056,0.915674649,neg,ns,0.912320509,Nrxn1,Nrxn1_Exon,17,90700870,90700919,90700870,90700871,50,-,CGTTGTGGTAAGAATCCCATCCACTGATATTGTCACCTAGATAACAAAGC,"Exon (Nrxn1-202/Nrxn1, exon 6 of 21)",17,90033631,91088907,1055277,2,Nrxn1-202,387988,Nrxn1-202;Nrxn1-207;Nrxn1-216;Nrxn1-209;Nrxn1-201;Nrxn1-206;Nrxn1-208;Nrxn1-210;Nrxn1-224;Nrxn1-205;Nrxn1-203,Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,22,27,18189,ENSMUSG00000024109,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14684,cg08711021,0.0000646,0.00000807,8.004382405,2.43E-14,gain,yes,-0.000013,0.0000137,-0.945584845,0.345096811,neg,ns,0.010048745,0.004016509,2.501860676,0.012869343,pos,ns,1.890443609,-0.000210581,0.000138127,-1.524543983,0.128392382,neg,ns,0.021882211,Ctnna2,Ctnna2_Exon,6,77243778,77243827,77243778,77243779,50,-,CGCTACAACAGCCTCTCGGAGCTGCGCGCCGGCCAGTTCACGGGGTTAAT,"Exon (Lrrtm1-201/Lrrtm1, exon 2 of 3)",6,76881637,77979699,1098063,2,Ctnna2-204,735872,Ctnna2-204;Ctnna2-205;Ctnna2-202;Ctnna2-201;Lrrtm1-201;Lrrtm1-202;Lrrtm1-203;Lrrtm1-204,Ctnna2;Ctnna2;Ctnna2;Ctnna2;Lrrtm1;Lrrtm1;Lrrtm1;Lrrtm1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,16,24,12386,ENSMUSG00000063063,conserved gene and region,6,77243660,77243918,259,*,259,23,0.633204633,0.885930994,0.088803089,1.29E-16,CpGisland,TRUE,U13,Hc-P
14498,cg05292995,-0.0000588,0.00000906,-6.488553448,3.43E-10,loss,yes,0.0000146,0.0000154,0.945427777,0.345176833,pos,ns,-0.006254249,0.004509541,-1.386892557,0.166470943,neg,ns,0.77866156,-0.000129383,0.000155083,-0.834282317,0.404764333,neg,ns,0.719001286,Pde11a,Pde11a_Exon,2,76059010,76059059,76059010,76059011,50,+,CGAGGTCATGACACAGGCATCCCACAATCACCGCTAAAATTTCCACCTCG,"Exon (Pde11a-201/Pde11a, exon 13 of 20)",2,75989912,76338774,348863,2,Pde11a-201,279715,Pde11a-201;Pde11a-203,Pde11a;Pde11a,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,4,241489,ENSMUSG00000075270,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5618,cg13982956,-0.0000381,0.0000114,-3.342729793,0.000931231,loss,ns,0.0000183,0.0000194,0.945236466,0.345274316,pos,ns,-0.001961172,0.005679982,-0.345277832,0.730119675,neg,ns,0.136605948,0.000104322,0.000195334,0.534068272,0.593677067,pos,ns,0.846459679,Pbx3,Pbx3_Intron,2,34359914,34359963,34359914,34359915,50,-,CGCGGTCCACAAACTGCTCCTAGCTACGGATGAGAGGGCCACAAAAACAC,"Intron (Pbx3-202/Pbx3, intron 2 of 7)",2,34171457,34372038,200582,2,Pbx3-202,12075,Pbx3-202;Pbx3-201;Pbx3-206;Pbx3-207;Pbx3-209;Pbx3-204;Pbx3-205;Pbx3-203,Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,82,18516,ENSMUSG00000038718,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
257,cg24905433,-0.000074,0.0000104,-7.085905138,9.34E-12,loss,yes,0.0000168,0.0000177,0.945063239,0.345362599,pos,ns,0.016440097,0.005199268,3.162002032,0.00172194,pos,ns,2.763982012,-0.000900313,0.000178802,-5.035237103,0.000000811,neg,yes,0.526679451,Cdk14,Cdk14_Intron,5,4877365,4877414,4877413,4877414,50,-,TCCTGCTAACTAGCCTTTTTGACCTGCACTAAGAGGAACTCATCTGATCG,"Intron (Cdk14-203/Cdk14, intron 13 of 13)",5,4803391,5266068,462678,2,Cdk14-203,388654,Cdk14-203;Cdk14-201;Cdk14-202;Cdk14-204,Cdk14;Cdk14;Cdk14;Cdk14,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,16,18647,ENSMUSG00000028926,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10208,cg23491577,-0.00000326,0.00000281,-1.161709899,0.246246985,loss,ns,-0.00000451,0.00000477,-0.944963481,0.345413446,neg,ns,-0.001762388,0.001398689,-1.260028206,0.208606897,neg,ns,0.680671338,0.0000475,0.0000481,0.988089871,0.323879218,pos,ns,0.943587834,Neb,Neb_Exon,2,52237048,52237097,52237048,52237049,50,+,CGGTCACTCTGCACTTTGGCAATGTGGAGGGACCACATTATCTTGGGGTC,"Exon (Neb-202/Neb, exon 73 of 157)",2,52136647,52338798,202152,2,Neb-202,101701,Neb-202;Neb-203;Neb-213;Neb-214;Neb-208,Neb;Neb;Neb;Neb;Neb,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,8,17996,ENSMUSG00000026950,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12304,cg08249407,-0.0000108,0.0000038,-2.835085976,0.004882331,loss,ns,-0.00000609,0.00000645,-0.944884834,0.345453537,neg,ns,-0.00125664,0.001888839,-0.665297384,0.506354974,neg,ns,0.29554492,0.0000194,0.000065,0.298066032,0.765852438,pos,ns,0.946545597,Fign,Fign_Intergenic_downstream,2,63878480,63878529,63878528,63878529,50,+,CGATCCTCATCATGCAGAAATTGATGATTTAATATAGTCAATGACAGACG,Distal Intergenic,2,63980447,64097988,117542,2,Fign-202,219459,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,28,84,60344,ENSMUSG00000075324,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16723,cg18211630,0.00000557,0.00000367,1.516952264,0.1302978,gain,ns,0.00000589,0.00000624,0.944821707,0.345485718,pos,ns,0.002466846,0.001827263,1.350022363,0.177993688,pos,ns,0.749595399,-0.0000487,0.0000628,-0.775615182,0.438567515,neg,ns,0.94205636,Med13,Med13_threeUTR,11,86267105,86267154,86267153,86267154,50,+,CTTTTCATTTCCTCAATCACAATTTGTACAACTCAGTGTTATGGCATTCG,3' UTR,11,86267033,86357602,90570,2,Med13-201,90448,Med13-201,Med13,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,12,327987,ENSMUSG00000034297,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4156,cg14415024,0.0000341,0.00000593,5.738603622,2.27E-08,gain,yes,-0.00000953,0.0000101,-0.944712557,0.345541365,neg,ns,0.004990436,0.002953863,1.689460985,0.092136525,pos,ns,1.035568172,-0.00011403,0.000101583,-1.122525436,0.262507746,neg,ns,0.065032661,Zfp703,Zfp703_Intergenic_downstream,8,26984805,26984854,26984853,26984854,50,+,GTCTAACTGGCAGCTTCTATTTTCCTATTGATTTATTGCAGCCGTTGCCG,Distal Intergenic,8,26978185,26978692,508,1,Zfp703-203,6620,Zfp703-202,Zfp703,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,11,353310,ENSMUSG00000085795,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
27644,cg17653914,-0.0000038,0.00000214,-1.778975941,0.076223519,loss,ns,-0.00000343,0.00000363,-0.944578133,0.345609906,neg,ns,0.000359282,0.00106437,0.33755401,0.735927754,pos,ns,0.133164818,-0.0000265,0.0000366,-0.724474028,0.469321187,neg,ns,0.076735838,Gm20721,Gm20721_threeUTR,2,174330359,174330408,174330407,174330408,50,-,GCCAACAAAAAGATCGAGAAGCAGCTGCAGAAGGACAAGCAGGTCTACCG,3' UTR,2,174330319,174346712,16394,2,Gm20721-201,16304,Gm20721-201;Gnas-222;Gnas-211;Gnas-215;Gnas-214;Gnas-201;Gnas-209;Gnas-220;Gnas-223;Gnas-224;Gnas-203;Gnas-212;Gnas-221;Gnas-219;Gnas-227;Gnas-217;Gnas-202;Gnas-218;Gnas-207;Gnas-226;Gnas-208;Gnas-206;Gnas-205,Gm20721;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas,0;0;0;0;0;0;0;0;0;0;0;0;0;2629;2602;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,9,10,,NA,mapped to different genes,2,174329643,174330863,1221,*,1221,154,0.773955774,0.845096629,0.126126126,9.62E-134,CpGisland,TRUE,U1,Pr-A
14879,cg24640147,0.000000264,0.000000335,0.787589679,0.431538517,gain,ns,-0.000000538,0.000000569,-0.944543726,0.345627451,neg,ns,-0.000461465,0.000166828,-2.766112094,0.006013275,neg,ns,2.220888916,0.0000146,0.00000574,2.541393596,0.011528112,pos,ns,0.992991029,Flot2,Flot2_fiveUTR,11,78053387,78053436,78053435,78053436,50,+,CCTGTGTCGCTGTGAGAATATTGAGACGTCGGAGGGGGTTCCACTATTCG,5' UTR,11,78037931,78060434,22504,1,Flot2-201,15456,Flot2-201;Flot2-205;Flot2-203;Flot2-202;Flot2-204,Flot2;Flot2;Flot2;Flot2;Flot2,0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,9,13,14252,ENSMUSG00000061981,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13174,cg14380464,0.000063,0.00000828,7.613863499,3.24E-13,gain,yes,0.0000133,0.0000141,0.9445044,0.345647505,pos,ns,0.013971375,0.004120521,3.39068153,0.000787474,pos,ns,3.103764002,-0.000216129,0.000141704,-1.525206946,0.128227026,neg,ns,0.149030195,Gm7627,Gm7627_Intergenic_upstream,7,69642063,69642112,69642111,69642112,50,-,CTAACTGGAGGCCACCAACCTTGAGAACAAACTGTTGCAAAGAAGCCCCG,Distal Intergenic,7,69605842,69606840,999,2,Gm7627-201,-35272,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,11,665410,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23057,cg14491141,0.00000615,0.00000523,1.175305366,0.240774471,gain,ns,-0.0000084,0.00000889,-0.944491541,0.345654063,neg,ns,-0.004285572,0.002605278,-1.64495762,0.100992127,neg,ns,0.995712482,0.00017592,0.0000896,1.963492875,0.050482518,pos,ns,0.819254271,Taok3,Taok3_fiveUTR,5,117241131,117241180,117241131,117241132,50,-,CGATCCCAGGCCTGAGCCGCGGCCTACCCAGTCAGTTCAGAGCCAGGCCC,5' UTR,5,117120129,117275217,155089,1,Taok3-203,121002,Taok3-203;Taok3-210;Taok3-201;Taok3-205;Taok3-208;Taok3-202,Taok3;Taok3;Taok3;Taok3;Taok3;Taok3,0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,11,20,330177,ENSMUSG00000061288,conserved gene and region,5,117241107,117241224,118,*,118,13,0.661016949,1.011206328,0.110169492,8.62E-11,CpGisland,TRUE,U10,Tr-S
23332,cg08347768,-0.0000231,0.00000579,-3.978530494,0.0000864,loss,ns,0.0000093,0.00000984,0.944370414,0.345715836,pos,ns,0.004119997,0.002884139,1.428501718,0.154154252,pos,ns,0.812044492,-0.0000222,0.0000992,-0.223770504,0.823083279,neg,ns,0.76371364,Slc6a9,Slc6a9_Exon,4,117857242,117857291,117857290,117857291,50,+,GCATCTACTACAATGTGGTCATCTGCATCGCCTTCTACTACTTCTTCTCG,"Exon (Slc6a9-202/Slc6a9, exon 6 of 15)",4,117834506,117869296,34791,1,Slc6a9-202,22736,Slc6a9-202;Slc6a9-201;Slc6a9-207;Slc6a9-210;Slc6a9-206;Slc6a9-204;Slc6a9-211;Slc6a9-209;Slc6a9-203;Slc6a9-205,Slc6a9;Slc6a9;Slc6a9;Slc6a9;Slc6a9;Slc6a9;Slc6a9;Slc6a9;Slc6a9;Slc6a9,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,8,14664,ENSMUSG00000028542,conserved gene and region,4,117857255,117857397,143,*,143,10,0.608391608,0.802469136,0.06993007,0.00000182,CpGisland,TRUE,U10,Tr-S
15869,cg08104970,0.0000493,0.00000418,11.790899,9.26E-27,gain,yes,-0.0000067,0.0000071,-0.944353466,0.34572448,neg,ns,0.009054632,0.002079189,4.354885848,0.0000181,pos,ns,4.741996576,0.00000711,0.0000715,0.099410711,0.920876432,pos,ns,0.104293457,Gm6411,Gm6411_Intron,13,83732376,83732425,83732376,83732377,50,-,CGTCCTCCTCGGCAGAGGGGGCTGGACTAGACCTTGGACAGCCCCCCCAA,"Intron (C130071C03Rik-201/C130071C03Rik-201, intron 1 of 3)",13,83761132,83762335,1204,2,Gm6411-201,29959,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,36,623241,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
6542,cg22245809,-0.00000329,0.00000241,-1.36780264,0.172364578,loss,ns,-0.00000386,0.00000409,-0.944195447,0.345805079,neg,ns,-0.000644042,0.001197993,-0.537600723,0.591238433,neg,ns,0.228237342,-0.0000226,0.0000412,-0.547776098,0.584239837,neg,ns,0.945363276,Zfp536,Zfp536_Intron,7,37651076,37651125,37651124,37651125,50,+,GTTTGTGCATGAGTGCACAGTGAAACACACAGATGCCATTTTATTCCCCG,"Intron (Zfp536-202/Zfp536, intron 3 of 6)",7,37479104,37769624,290521,2,Zfp536-202,118499,Zfp536-202;Zfp536-201;Zfp536-203;Zfp536-206;Zfp536-209;Zfp536-208,Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,73,112,243937,ENSMUSG00000043456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1163,cg21989886,-0.00000367,0.00000092,-3.985590169,0.000084,loss,ns,0.00000148,0.00000156,0.944126456,0.345840273,pos,ns,0.000756206,0.000457732,1.652070086,0.099532745,pos,ns,1.00203402,-0.0000057,0.0000157,-0.362368267,0.717323762,neg,ns,0.03271187,Osbp,Osbp_Exon,19,11966265,11966314,11966313,11966314,50,-,GTGCTGAGCAACGGGCTCCTGAGCTACTACAGGTAACTGCTTCCGGGGCG,Promoter (<=1kb),19,11965941,11994112,28172,1,Osbp-201,324,Osbp-201,Osbp,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,6,76303,ENSMUSG00000024687,conserved gene but different region,19,11966253,11966407,155,*,155,13,0.677419355,0.750745157,0.083870968,0.000000003,CpGisland,TRUE,U1,Pr-A
9573,cg10289720,0.0000378,0.00000506,7.467471878,8.36E-13,gain,yes,-0.00000812,0.0000086,-0.944014931,0.345897169,neg,ns,0.006310766,0.002518961,2.505304888,0.012747206,pos,ns,1.894584988,-0.000123191,0.0000866,-1.422091689,0.156004982,neg,ns,0.017813781,Foxg1,Foxg1_Exon,12,49385325,49385374,49385325,49385326,50,+,CGGTGCGCGCCTCACCTCCACCGGCCTCACCTTCATGGACCGCGCCGGCT,"Exon (Foxg1-204/Foxg1, exon 1 of 1)",12,49382883,49386855,3973,1,Foxg1-204,2442,Foxg1-202;Foxg1-203;Foxg1-204;Foxg1-201;Gm43517-201,Foxg1;Foxg1;Foxg1;Foxg1;Gm43517,0;2525;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,27,15228,ENSMUSG00000020950,conserved gene and region,12,49385116,49385808,693,*,693,72,0.670995671,0.980968858,0.103896104,4.68E-56,CpGisland,TRUE,U13,Hc-P
2143,cg19568727,-0.0000248,0.00000928,-2.674052911,0.007891355,loss,ns,0.0000149,0.0000158,0.94395345,0.345928536,pos,ns,-0.002931954,0.004620427,-0.634563386,0.526181232,neg,ns,0.278864647,-0.000078,0.000158896,-0.491163798,0.623658138,neg,ns,0.807210257,Gm12017,Gm12017_Intergenic_upstream,11,18069469,18069518,18069469,18069470,50,+,CGCTGCTTTGTTTATGGATTTGATGCTATTCATATAGTCTTTGCAATATT,Distal Intergenic,11,17973788,17974790,1003,2,Gm12017-201,-94679,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,3,327871,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1164,cg11659513,-5.93E-08,0.00000167,-0.035496025,0.971707061,loss,ns,0.00000268,0.00000284,0.943937398,0.345936727,pos,ns,0.001380548,0.000831051,1.661207013,0.097682832,pos,ns,1.010181756,-0.0000471,0.0000286,-1.648581645,0.100246399,neg,ns,0.950640709,Osbp,Osbp_Exon,19,11984417,11984466,11984417,11984418,50,-,CGCACCATGCTGAGTCCAAAAATGGCTGGACATTGCGTCAGGAAATCAAA,"Exon (Osbp-201/Osbp, exon 9 of 14)",19,11965941,11994112,28172,1,Osbp-201,18476,Osbp-201,Osbp,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,6,76303,ENSMUSG00000024687,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19277,cg26654286,0.00010455,0.0000125,8.350533156,2.29E-15,gain,yes,-0.0000201,0.0000213,-0.94393235,0.345939302,neg,ns,0.001773288,0.0062314,0.284573047,0.776161266,pos,ns,0.110048034,0.000240771,0.000214297,1.123538277,0.26207827,pos,ns,0.447939305,Rara,Rara_fiveUTR,11,98927834,98927883,98927882,98927883,50,-,TCCTGAATCGAGCTGAGAGGGCTTCCCCGGTTCTCCTGGGAACCCCATCG,Promoter (<=1kb),11,98927818,98974162,46345,1,Rara-203,16,Cdc6-201;Cdc6-203;Rara-203,Cdc6;Cdc6;Rara,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,12,19401,ENSMUSG00000037992,conserved gene and region,11,98927842,98927998,157,*,157,10,0.643312102,0.663006757,0.063694268,0.00000418,CpGisland,TRUE,U4,Pr-F
7188,cg03523182,0.0000695,0.0000148,4.698398,0.00000395,gain,ns,-0.0000237,0.0000251,-0.943874692,0.345968722,neg,ns,0.023453933,0.007366804,3.183732528,0.001601575,pos,ns,2.795452591,-0.000672992,0.000253344,-2.656438868,0.008305791,neg,ns,0.354350548,Jade1,Jade1_Exon,3,41581233,41581282,41581233,41581234,50,+,CGCCTTCCCAGCAGCAGTGAGGATTCTGACGACAATGGCAGTAAGTCCTG,"Exon (Jade1-201/Jade1, exon 2 of 11)",3,41555731,41616864,61134,1,Jade1-201,25502,Jade1-201;Jade1-210;Jade1-214;Jade1-202;Jade1-209;Jade1-204;Jade1-203;Jade1-211;Jade1-206;Jade1-212,Jade1;Jade1;Jade1;Jade1;Jade1;Jade1;Jade1;Jade1;Jade1;Jade1,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,16,269424,ENSMUSG00000025764,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
12099,cg08386299,0.0000316,0.00000359,8.81023877,9.07E-17,gain,yes,-0.00000575,0.00000609,-0.943634364,0.346091364,neg,ns,0.005624697,0.001784691,3.151636606,0.001782251,pos,ns,2.749031217,-0.000132617,0.0000614,-2.160749784,0.031480408,neg,ns,0.090118143,Tet1,Tet1_Intron,10,62865491,62865540,62865539,62865540,50,+,ACAGGCAGCCACAAGCTGCGACATGGAGTTCGCTGCAGAGGATCTGGTCG,"Intron (Tet1-201/Tet1, intron 1 of 10)",10,62804570,62880014,75445,2,Tet1-201,14474,Tet1-201;Tet1-206;Tet1-202,Tet1;Tet1;Tet1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,5,52463,ENSMUSG00000047146,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16587,cg14672910,0.000022,0.00000564,3.900194543,0.000117883,gain,ns,-0.00000904,0.00000958,-0.943550225,0.346134308,neg,ns,0.002530836,0.002806775,0.901688354,0.367922457,pos,ns,0.434243703,-0.0000591,0.0000965,-0.612005197,0.540982919,neg,ns,0.118907693,Six3,Six3_Exon,17,85609389,85609438,85609437,85609438,50,+,TGCAAACAGCTGTTCCTCATACATATTTCATTACACAATCAGATAATGCG,Promoter (4-5kb),17,85613608,85625222,11615,1,Six3-202,-4170,Six3-202,Six3,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,24,20473,ENSMUSG00000038805,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
10126,cg23329807,0.00015335,0.0000239,6.404527852,5.59E-10,gain,yes,-0.0000384,0.0000407,-0.94343097,0.346195181,neg,ns,0.031307468,0.011917153,2.627092955,0.009039874,pos,ns,2.043837641,-0.001067915,0.00040983,-2.605752797,0.009609708,neg,ns,0.23056491,Gm28308,Gm28308_Intron,6,52197543,52197592,52197543,52197544,50,+,CGTCATTTGTTAGGCGATGACAGACTTCACCTCCAGCAAGGGCTGCTTCA,"Intron (Hoxaas3-202/Hoxaas3-202, intron 1 of 2)",6,52163359,52213339,49981,2,Gm28308-201,15747,Gm28308-201;Hoxa3-201;Hoxa3-203;Hoxa5-201,Gm28308;Hoxa3;Hoxa3;Hoxa5,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,46,103,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
17350,cg17336754,0.0000525,0.0000111,4.726939469,0.00000346,gain,ns,0.0000178,0.0000189,0.943395692,0.346213189,pos,ns,0.015562054,0.005527657,2.815307444,0.005185047,pos,ns,2.285247272,-0.000347195,0.000190096,-1.826424057,0.068748041,neg,ns,0.380807205,Nrxn3,Nrxn3_Exon,12,89813562,89813611,89813610,89813611,50,+,CACCATTTCCATGGCAGCAAGCATCACTCAGTGCCTATTTCTATCTATCG,"Exon (Nrxn3-214/Nrxn3, exon 1 of 6)",12,88722986,90332878,1609893,1,Nrxn3-213,1090576,Nrxn3-213;Nrxn3-208;Nrxn3-205;Nrxn3-201;Nrxn3-210;Nrxn3-214;Nrxn3-203;Nrxn3-202,Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,39,18191,ENSMUSG00000066392,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24421,cg14962584,-0.0000209,0.0000106,-1.965853266,0.0502078,loss,ns,0.000017,0.000018,0.943287899,0.346268219,pos,ns,0.001323291,0.005286786,0.25030168,0.802519857,pos,ns,0.095544213,-0.0000809,0.000181812,-0.445096479,0.656560663,neg,ns,0.688395697,Grik3,Grik3_Intron,4,125656064,125656113,125656064,125656065,50,-,CGAGAAGGTGCAAATGTAAAGCTGGCTAAAGAGCATAATAGAATTTATGG,"Intron (Grik3-201/Grik3, intron 7 of 15)",4,125490700,125714173,223474,1,Grik3-201,165364,Grik3-201,Grik3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,14,18,14807,ENSMUSG00000001985,conserved gene and region,4,125655970,125656139,170,*,170,13,0.6,0.852623457,0.076470588,9.43E-09,CpGisland,TRUE,U15,NS
696,cg16944356,0.0000286,0.00000696,4.101626442,0.0000525,gain,ns,-0.0000112,0.0000118,-0.942959732,0.346435787,neg,ns,0.001142026,0.003465278,0.329562604,0.741953049,pos,ns,0.129623576,-0.0000754,0.000119171,-0.632993584,0.527204495,neg,ns,0.68013312,Rbm3,Rbm3_threeUTR,X,8144350,8144399,8144398,8144399,50,+,GCAGGTCAACCATCCACAGGTGGCTTCTCGGCCTCATGCAGGACCAGTCG,3' UTR,20,8138978,8145697,6720,2,Rbm3-201,1298,Rbm3-211;Rbm3-201;Rbm3-205;Rbm3-206;Rbm3-202;Rbm3-204;Rbm3-203;Rbm3-207;Rbm3-209;Rbm3-208;Rbm3-210,Rbm3;Rbm3;Rbm3;Rbm3;Rbm3;Rbm3;Rbm3;Rbm3;Rbm3;Rbm3;Rbm3,-1432;0;0;0;0;0;0;0;0;0;1360,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,2,19652,ENSMUSG00000031167,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7465,cg11411057,-0.00000895,0.0000124,-0.724590237,0.469249972,loss,ns,0.0000198,0.000021,0.942895919,0.346468377,pos,ns,-0.009580266,0.006149691,-1.557845197,0.120290231,neg,ns,0.919769641,0.000433036,0.000211487,2.0475752,0.041444121,pos,ns,0.363040873,Pou3f3,Pou3f3_threeUTR,1,42699974,42700023,42700022,42700023,50,-,TGACTTCTTTTAATATTTTATTCAGAATACTTATGAACTGCTGCAAAACG,3' UTR,1,42694925,42703176,8252,1,Pou3f3-202,5049,Pou3f3-202;Pou3f3-201,Pou3f3;Pou3f3,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,5,37,18993,ENSMUSG00000045515,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
4449,cg22962970,0.00000181,0.00000372,0.48712397,0.626514742,gain,ns,-0.00000595,0.00000631,-0.942860271,0.346486583,neg,ns,0.002149837,0.001849129,1.162621495,0.245877327,pos,ns,0.609281517,-0.000154393,0.0000636,-2.427894296,0.015755737,neg,ns,0.78851442,Cfap77,Cfap77_Intron,2,28943969,28944018,28943969,28943970,50,+,CGGAGCCACGAAACTTCCATCGGCTCATTAAACCCAACAGGGCCCGGGCC,"Intron (Cfap77-203/Cfap77, intron 6 of 6)",2,28926949,29055024,128076,2,Cfap77-203,111006,Cfap77-203;Cfap77-204;Cfap77-205,Cfap77;Cfap77;Cfap77,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,6,329375,ENSMUSG00000079502,conserved gene and region,2,28943926,28944386,461,*,461,27,0.57483731,0.710688592,0.05856833,1.10E-14,CpGisland,TRUE,NA,NRS
14795,cg24924928,-0.000000766,0.00000345,-0.222213315,0.824294154,loss,ns,-0.00000552,0.00000585,-0.942776117,0.346529566,neg,ns,0.002688298,0.001715283,1.567262309,0.118073555,pos,ns,0.92784736,0.0000175,0.000059,0.296900541,0.766741276,pos,ns,0.92947422,Nufip2,Nufip2_Exon,11,77693144,77693193,77693144,77693145,50,+,CGAACACTTTGTTAGGCTCTGCCAAAGAACAGAGATACCAGAGAGGCCTA,"Exon (Nufip2-201/Nufip2, exon 2 of 4)",11,77686155,77712741,26587,1,Nufip2-201,6989,Nufip2-201;Nufip2-204;Nufip2-202;Nufip2-203,Nufip2;Nufip2;Nufip2;Nufip2,0;0;5685;5543,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,10,68564,ENSMUSG00000037857,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17863,cg12260093,-0.00000519,0.00000261,-1.987463747,0.047750671,loss,ns,-0.00000418,0.00000444,-0.942670758,0.346583385,neg,ns,-0.003147209,0.001299807,-2.421289083,0.016039413,neg,ns,1.79481154,0.0000353,0.0000447,0.790174966,0.430029618,pos,ns,0.050738732,Phf21a,Phf21a_Intron,2,92182813,92182862,92182813,92182814,50,-,CGGATTATACGTGGCCGATTCCCAGTGATTGCCCTGCTACACAAAGCAGA,"Intron (Phf21a-201/Phf21a, intron 1 of 15)",2,92093117,92364666,271550,1,Phf21a-201,89696,Phf21a-201;Phf21a-202;Phf21a-204;Phf21a-209;Phf21a-208;Phf21a-207;Phf21a-212;Phf21a-219;Phf21a-206;Phf21a-216;Phf21a-221;Phf21a-220;Phf21a-210;Phf21a-205;Phf21a-211,Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,21,192285,ENSMUSG00000058318,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
24143,cg02036957,-0.00000398,0.00000123,-3.235369793,0.001346094,loss,ns,0.00000197,0.00000209,0.942552342,0.346643879,pos,ns,0.000037,0.000612823,0.060341827,0.951922272,pos,ns,0.021398512,-0.0000213,0.0000211,-1.010371149,0.313105468,neg,ns,0.033023379,D630033A02Rik,D630033A02Rik_Exon,10,122985659,122985708,122985659,122985660,50,+,CGCAGTTATCTCCACAGCGGGCAATGTCACAACCCGACCAACAGCACAAA,Promoter (<=1kb),10,122985074,122985831,758,2,D630033A02Rik-202,123,D630033A02Rik-202;D630033A02Rik-201,D630033A02Rik;D630033A02Rik,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,402753,NA,mapped to different genes,10,122985225,122985694,470,*,470,59,0.644680851,1.224498808,0.125531915,1.84E-51,CpGisland,TRUE,U1,Pr-A
24989,cg02658193,-0.000000953,0.00000116,-0.822175635,0.411608864,loss,ns,0.00000186,0.00000197,0.942489503,0.346675984,pos,ns,0.001156003,0.000577102,2.003118907,0.04603478,pos,ns,1.336913925,-0.00000573,0.0000198,-0.288536905,0.77312862,neg,ns,0.040603171,Lef1,Lef1_Promoter,3,131105955,131106004,131106003,131106004,50,-,TACCCGGAAGAGAACCCTTGGCCTTCTCAGCTGGGAGCTGGGAGCACACG,Promoter (4-5kb),3,131110471,131224356,113886,1,Lef1-204,-4516,Lef1-201;Lef1-202;Lef1-204,Lef1;Lef1;Lef1,0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,9,16842,ENSMUSG00000027985,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
23519,cg20421046,-0.00000379,0.00000189,-2.002256387,0.04612794,loss,ns,0.00000303,0.00000322,0.942361975,0.346741145,pos,ns,0.002127998,0.000942253,2.258415766,0.024614633,pos,ns,1.608806633,-0.0000559,0.0000324,-1.724240221,0.085661358,neg,ns,0.056310886,Inafm2,Inafm2_fiveUTR,2,118746076,118746125,118746124,118746125,50,-,GGGGCCGTGGAGCACCGGGGCAAAGGCCGGGGCCCCCCCATGAAGGAGCG,Promoter (<=1kb),2,118745758,118748810,3053,1,Inafm2-201,318,Inafm2-201,Inafm2,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,2,100043272,ENSMUSG00000074918,conserved gene but different region,2,118745611,118746808,1198,*,1198,162,0.759599332,0.937615042,0.135225376,2.04E-146,CpGisland,TRUE,U1,Pr-A
20438,cg19964527,0.0000773,0.00000535,14.44347444,1.63E-36,gain,yes,0.00000856,0.00000909,0.942324247,0.346760424,pos,ns,0.009685692,0.002662364,3.638004809,0.000321716,pos,ns,3.49252752,-0.000116912,0.0000916,-1.276908383,0.202590216,neg,ns,0.098470393,Hoxc4,Hoxc4_threeUTR,15,103035744,103035793,103035744,103035745,50,-,CGAAGGAGAAGGATCGAGATCGCCCACTCGCTGTGCCTCTCTGAGAGGCA,3' UTR,15,103018934,103036405,17472,1,Hoxc4-202,16810,Hoxc4-202;Hoxc4-201,Hoxc4;Hoxc4,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,17,91,15423,ENSMUSG00000075394,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
13553,cg22523226,-0.000000752,0.00000263,-0.28574044,0.775267764,loss,ns,-0.00000421,0.00000447,-0.942002173,0.346925029,neg,ns,-0.00202766,0.001309525,-1.548393498,0.122547837,neg,ns,0.911694351,0.0000632,0.000045,1.402738003,0.161695671,pos,ns,0.955285955,Mtm1,Mtm1_Exon,X,71299645,71299694,71299645,71299646,50,+,CGGATGGGACAGGACTGCTCAGCTGACATCCTTGGCCATGCTGATGTTGG,"Exon (Mtm1-213/Mtm1, exon 11 of 15)",20,71210767,71315295,104529,1,Mtm1-213,88878,Mtm1-213;Mtm1-201;Mtm1-203;Mtm1-206;Mtm1-209;Mtm1-207;Mtm1-202;Mtm1-212;Mtm1-205;Mtm1-208,Mtm1;Mtm1;Mtm1;Mtm1;Mtm1;Mtm1;Mtm1;Mtm1;Mtm1;Mtm1,0;0;0;0;0;0;0;0;0;-1675,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,17772,ENSMUSG00000031337,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9911,cg02699795,-0.0000061,0.0000026,-2.351411334,0.019328078,loss,ns,0.00000415,0.00000441,0.941909972,0.346972161,pos,ns,0.000600535,0.001291853,0.464863485,0.642355566,pos,ns,0.192224509,-0.0000602,0.0000444,-1.355872245,0.176126675,neg,ns,0.929542403,Gm46574,Gm46574_Intergenic_upstream,17,51536897,51536946,51536945,51536946,50,-,TTTAATTAGCAGTAATTCATTTTGCACAAAGCATGTTGATGCCTTTGCCG,Distal Intergenic,17,51484292,51484721,430,2,Gm46574-201,-52225,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,19,108168316,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8743,cg26383545,0.00000256,0.00000281,0.912301293,0.362319048,gain,ns,0.0000045,0.00000477,0.94186709,0.346994082,pos,ns,0.001001334,0.001398749,0.715877771,0.474605706,pos,ns,0.323667044,-0.0000783,0.0000481,-1.628598874,0.104413748,neg,ns,0.925239943,Tmem63b,Tmem63b_Exon,17,45662893,45662942,45662941,45662942,50,-,TGTAGGTCATGACCACCGTGAAGACGCACATCATCCAGGCGTAGGCTGCG,"Exon (Tmem63b-201/Tmem63b, exon 20 of 24)",17,45660171,45686259,26089,2,Tmem63b-201,23317,Capn11-201;Capn11-202;Tmem63b-201;Tmem63b-208;Tmem63b-203;Tmem63b-207,Capn11;Capn11;Tmem63b;Tmem63b;Tmem63b;Tmem63b,-3568;-3596;0;0;3512;23031,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,12,224807,ENSMUSG00000036026,conserved gene and region,17,45662805,45662957,153,*,153,13,0.647058824,0.81583265,0.08496732,2.55E-09,CpGisland,TRUE,NA,NRS
17581,cg22970871,0.000108605,0.0000176,6.178203733,2.04E-09,gain,yes,-0.0000281,0.0000299,-0.94179051,0.347033233,neg,ns,0.02550071,0.008749133,2.914655698,0.003820067,pos,ns,2.417929047,-0.000866667,0.000300882,-2.880423001,0.004248141,neg,ns,0.320889051,Spi1,Spi1_Exon,2,91115210,91115259,91115210,91115211,50,-,CGCACCGCTGGGGCATCCAGAAGGGCAACCGCAAGAAGATGACCTACCAG,"Exon (Spi1-201/Spi1, exon 5 of 5)",2,91096096,91115756,19661,1,Spi1-201,19114,Mybpc3-201;Mybpc3-202;Mybpc3-203;Spi1-204;Spi1-201;Spi1-203,Mybpc3;Mybpc3;Mybpc3;Spi1;Spi1;Spi1,-2885;-2885;-2885;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,7,20375,ENSMUSG00000002111,conserved gene but different region,2,91115186,91115299,114,*,114,12,0.649122807,1.002197802,0.105263158,9.79E-10,CpGisland,TRUE,U2,Pr-W
12066,cg14456915,-0.00000715,0.00000271,-2.636985193,0.008786161,loss,ns,0.00000434,0.00000461,0.94167688,0.347091331,pos,ns,0.001462653,0.001349892,1.083533241,0.279413823,pos,ns,0.553752113,-0.0000489,0.0000464,-1.054195551,0.292614336,neg,ns,0.064123046,Nrp2,Nrp2_fiveUTR,1,62703252,62703301,62703252,62703253,50,-,CGTCTCCGCGGCTGCCTCTTTAATCAGGAACACAGAAGGGGCGGGCCCTG,Promoter (<=1kb),1,62703285,62739932,36648,1,Nrp2-207,0,Nrp2-207;Nrp2-203;Nrp2-204;Nrp2-201;Nrp2-205;Nrp2-202;Nrp2-206,Nrp2;Nrp2;Nrp2;Nrp2;Nrp2;Nrp2;Nrp2,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,6,18187,ENSMUSG00000025969,conserved gene but different region,1,62702985,62703633,649,*,649,72,0.708782743,0.885,0.110939908,2.59E-58,CpGisland,TRUE,U3,Pr-B
20315,cg25876596,0.0000195,0.00000299,6.526342141,2.75E-10,gain,yes,-0.00000479,0.00000509,-0.941533716,0.347164538,neg,ns,0.002687205,0.001489944,1.803561075,0.072270913,pos,ns,1.141036461,-0.0000288,0.0000512,-0.561824578,0.574641508,neg,ns,0.035511461,Hoxc5,Hoxc5_Intron,15,102998059,102998108,102998059,102998060,50,+,CGCCCATTTGCACACGCTACACAAATGCATCGCATTCCCGGTTGTTTGCA,"Intron (Hoxc5-202/Hoxc5, intron 1 of 1)",15,102967443,103015676,48234,1,Hoxc5-202,30616,Hoxc5-202;Hoxc6-202;Hoxc6-203;Hoxc8-201;Hoxc8-202,Hoxc5;Hoxc6;Hoxc6;Hoxc8;Hoxc8,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,46,134,15424,ENSMUSG00000022485,conserved gene but different region,15,102997967,102998098,132,*,132,9,0.613636364,0.776470588,0.068181818,0.00000904,CpGisland,TRUE,U13,Hc-P
18493,cg18384387,-0.00000439,0.00000518,-0.847818487,0.397193177,loss,ns,-0.00000829,0.0000088,-0.94148933,0.347187236,neg,ns,-0.003233658,0.002579327,-1.253682731,0.210901974,neg,ns,0.675919356,0.0000219,0.0000887,0.24702135,0.80505521,pos,ns,0.898948421,Cnot6l,Cnot6l_threeUTR,5,96077302,96077351,96077350,96077351,50,-,TGTTCTCAACCAGCCATTGAGGATCTAAAGGCCCCAGGACACCAAGCACG,3' UTR,5,96070333,96161990,91658,2,Cnot6l-210,84639,Cnot6l-210;Cnot6l-208;Cnot6l-201;Cnot6l-202;Cnot6l-203,Cnot6l;Cnot6l;Cnot6l;Cnot6l;Cnot6l,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,11,13,231464,ENSMUSG00000034724,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8074,cg02994039,0.000028,0.00000392,7.156259607,6.03E-12,gain,yes,-0.00000626,0.00000665,-0.94134413,0.347261498,neg,ns,0.009647937,0.001949655,4.948536875,0.00000123,pos,ns,5.910426057,-0.000139254,0.000067,-2.076923054,0.038631991,neg,ns,0.078122744,Pax2,Pax2_Intergenic_upstream,19,44724186,44724235,44724234,44724235,50,-,GCCAAAGCCGAGATTTTAATCTTTAATCCATGAGCAATCAGCGAGCAGCG,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-31859,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,19,44723992,44724314,323,*,323,27,0.616099071,0.905795596,0.083591331,1.06E-18,CpGisland,TRUE,U13,Hc-P
25613,cg16789680,0.0000131,0.00000324,4.046535279,0.0000657,gain,ns,0.00000518,0.00000551,0.941307703,0.347280129,pos,ns,0.004244893,0.001612929,2.631792183,0.008918541,pos,ns,2.049706181,-0.000121314,0.0000555,-2.187086789,0.029483125,neg,ns,0.07866726,Ebf3,Ebf3_Promoter,7,137316718,137316767,137316766,137316767,50,-,ATATTAAGCGAAAATGAATGCAAATCTGTGTTCAGCAGCCATCTGGCCCG,Promoter (2-3kb),7,137193673,137314445,120773,2,Ebf3-204,-2322,Ebf3-204;Ebf3-201;Ebf3-202;Ebf3-203;Ebf3-208;Ebf3-206,Ebf3;Ebf3;Ebf3;Ebf3;Ebf3;Ebf3,0;0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,9,84,13593,ENSMUSG00000010476,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
14634,cg09058643,-0.0000814,0.0000127,-6.433124338,4.73E-10,loss,yes,-0.0000202,0.0000215,-0.941289975,0.347289197,neg,ns,0.023996907,0.006296289,3.81127775,0.000166747,pos,ns,3.777943247,-0.000867231,0.000216529,-4.005153209,0.0000776,neg,ns,0.520908729,Ttn,Ttn_Exon,2,76980092,76980141,76980140,76980141,50,+,CACTAATGTGAGCCTCAAAGGTTGCGGTACTACCCTCCAGTACCACAACG,"Exon (Ttn-201/Ttn, exon 2 of 191)",2,76703980,76982455,278476,2,Ttn-201,2314,Ttn-201;Ttn-203;Ttn-205;Ttn-204;Ttn-202;Ttn-207;Ttn-215;Ttn-217,Ttn;Ttn;Ttn;Ttn;Ttn;Ttn;Ttn;Ttn,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,12,22138,ENSMUSG00000051747,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5724,cg07277523,-0.00000639,0.00000586,-1.09174774,0.275791759,loss,ns,-0.00000936,0.00000995,-0.941234668,0.347317487,neg,ns,-0.00137242,0.002914734,-0.470855967,0.638074739,neg,ns,0.195128448,-0.0000997,0.000100237,-0.994528371,0.320741345,neg,ns,0.899312533,Kirrel3,Kirrel3_Intron,9,34620209,34620258,34620257,34620258,50,-,TAATTACTCGTTACAATTTTATTGATATTCACTTCACTCTGCAAATGACG,"Intron (Kirrel3-202/Kirrel3, intron 2 of 16)",9,34486126,35035280,549155,1,Kirrel3-202,134083,Kirrel3-202;Kirrel3-206;Kirrel3-209;Kirrel3-201;Kirrel3-208;Kirrel3-205,Kirrel3;Kirrel3;Kirrel3;Kirrel3;Kirrel3;Kirrel3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,21,67703,ENSMUSG00000032036,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12364,cg01558300,-0.000000904,0.00000163,-0.554659162,0.579527761,loss,ns,-0.00000261,0.00000277,-0.941201976,0.34733421,neg,ns,-0.0000587,0.000811063,-0.072393968,0.94233507,neg,ns,0.025794646,-0.0000338,0.0000279,-1.211560922,0.226603209,neg,ns,0.033240528,Smad6,Smad6_Promoter,9,64022094,64022143,64022094,64022095,50,-,CGCAAACAAGGTTTCAAGTTTCTTAACTCTTAAAGGAGAACACGTCCCAT,Promoter (<=1kb),9,63953076,64022059,68984,2,Smad6-201,-84,Smad6-201;Smad6-203,Smad6;Smad6,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,4,19,17130,ENSMUSG00000036867,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8791,cg05214767,-0.00000111,0.00000129,-0.860440983,0.390210967,loss,ns,-0.00000206,0.00000219,-0.94113285,0.347369572,neg,ns,-0.00073937,0.000641029,-1.153411244,0.249630147,neg,ns,0.602702968,-0.00000733,0.000022,-0.332603484,0.739658414,neg,ns,0.965803207,Oga,Oga_Intron,19,45761587,45761636,45761635,45761636,50,-,GTCCAGGAGACGCTTTATCCCCAAAGCAATGCGCTTCAGTTTGCTGTGCG,"Intron (Oga-201/Oga, intron 11 of 15)",19,45750259,45783551,33293,2,Oga-201,21915,Oga-201;Oga-204;Oga-203;Oga-206,Oga;Oga;Oga;Oga,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,21,76055,ENSMUSG00000025220,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15764,cg21880134,0.0000325,0.0000153,2.12878969,0.034059804,gain,ns,-0.0000244,0.000026,-0.940971859,0.347451938,neg,ns,0.00152092,0.007603871,0.200019235,0.841596684,pos,ns,0.074895984,0.000378854,0.000261496,1.448791168,0.148406654,pos,ns,0.444902587,Pkdcc,Pkdcc_Intron,17,83218673,83218722,83218673,83218674,50,+,CGACCTCCGGGTGTTTAATAACCTTCAGAAGTTTCCCACAAAGGCTCAGA,"Intron (Pkdcc-204/Pkdcc, intron 1 of 6)",17,83215292,83225070,9779,1,Pkdcc-204,3381,Pkdcc-204;Pkdcc-201;Pkdcc-203;Pkdcc-202,Pkdcc;Pkdcc;Pkdcc;Pkdcc,0;-1380;-1380;-2313,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,10,106522,ENSMUSG00000024247,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26415,cg23179691,-0.0000025,0.00000253,-0.989823589,0.323032301,loss,ns,0.00000404,0.00000429,0.940743052,0.347569021,pos,ns,0.002564987,0.001257565,2.039646046,0.042233139,pos,ns,1.374346633,-0.000133443,0.0000432,-3.085554018,0.002214944,neg,ns,0.937933553,Pax1,Pax1_Intergenic_upstream,2,147340143,147340192,147340143,147340144,50,+,CGCACAAGGTTTTCATAAGCACATTAATCTTAAAAGAAAAACTGTCAGAT,Distal Intergenic,2,147361925,147366362,4438,1,Pax1-202,-21733,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,2,18503,ENSMUSG00000037034,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10587,cg24641397,-0.0000149,0.00000532,-2.796653383,0.005486067,loss,ns,0.00000851,0.00000904,0.940572613,0.347656252,pos,ns,-0.000239575,0.002649337,-0.09042845,0.928005148,neg,ns,0.032449614,-0.0000754,0.0000911,-0.827110504,0.408810635,neg,ns,0.569604887,Rapgef6,Rapgef6_Exon,11,54597065,54597114,54597065,54597066,50,-,CGCTGTTATGCCAATTGTCTTCAGCCATGGGCCTCCAAAGTAAGTAATTG,"Exon (Rapgef6-208/Rapgef6, exon 1 of 9)",11,54522847,54699285,176439,1,Rapgef6-203,74218,Rapgef6-203;Rapgef6-205;Rapgef6-202;Rapgef6-210;Rapgef6-208;Rapgef6-211;Rapgef6-212,Rapgef6;Rapgef6;Rapgef6;Rapgef6;Rapgef6;Rapgef6;Rapgef6,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,192786,ENSMUSG00000037533,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20493,cg04623857,0.00000639,0.0000109,0.586311913,0.558092591,gain,ns,-0.0000174,0.0000185,-0.940447,0.34772055,neg,ns,0.001953703,0.005425886,0.360070805,0.719039375,pos,ns,0.143247327,-0.000201969,0.000186596,-1.082387225,0.279921713,neg,ns,0.798828824,Unc79,Unc79_Exon,12,103125694,103125743,103125694,103125695,50,-,CGCCCCCCATAACATCAGCAACTGGGACACTGGTGGGTCAAGCTTTTTCT,"Exon (Unc79-208/Unc79, exon 34 of 52)",12,102948859,103184001,235143,1,Unc79-202,176835,Unc79-202;Unc79-208;Unc79-201;Unc79-205,Unc79;Unc79;Unc79;Unc79,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,24,217843,ENSMUSG00000021198,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21414,cg08291752,-0.00000233,0.00000122,-1.913016488,0.056667037,loss,ns,0.00000195,0.00000207,0.940368562,0.347760705,pos,ns,0.000454716,0.000606504,0.749733289,0.453983939,pos,ns,0.342959511,-0.00002,0.0000209,-0.961053877,0.337274081,neg,ns,0.96465916,Zswim6,Zswim6_threeUTR,13,107725858,107725907,107725858,107725859,50,-,CGCTAAGTTTCCACATGCACAAGCATCGTGTGCCATGCTTCTGGACGAAC,3' UTR,13,107724617,107890064,165448,2,Zswim6-204,164157,Zswim6-204;Zswim6-201;Zswim6-203;Zswim6-202,Zswim6;Zswim6;Zswim6;Zswim6,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,26,67263,ENSMUSG00000032846,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18593,cg19247276,0.0000701,0.0000114,6.123849286,2.76E-09,gain,yes,-0.0000183,0.0000194,-0.940299472,0.347796076,neg,ns,-0.00339994,0.005694381,-0.59706927,0.550896957,neg,ns,0.258929627,0.000139492,0.000195829,0.712313849,0.476806207,pos,ns,0.090605719,Hoxb5,Hoxb5_Exon,11,96303658,96303707,96303706,96303707,50,-,TGGCCCGGACTATCAGTTGCTAAATTATGGCAGTGGCAGCTCTCTGAGCG,Promoter (<=1kb),11,96303336,96306121,2786,1,Hoxb5-202,322,Hoxb5-202;Hoxb5-201;Hoxb6-202;Hoxb6-201,Hoxb5;Hoxb5;Hoxb6;Hoxb6,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,22,34,15413,ENSMUSG00000038700,conserved gene and region,11,96303706,96304121,416,*,416,40,0.675480769,0.879120879,0.096153846,5.87E-30,CpGisland,TRUE,U3,Pr-B
20471,cg22262485,0.0000512,0.0000113,4.528331829,0.00000849,gain,ns,-0.000018,0.0000192,-0.940228555,0.347832385,neg,ns,0.012293083,0.005623592,2.185984034,0.029564502,pos,ns,1.529229437,-0.000374385,0.000193395,-1.935856034,0.053794309,neg,ns,0.073627453,Hoxc4,Hoxc4_Intergenic_downstream,15,103061690,103061739,103061690,103061691,50,-,CGAGTGATTTATGACTTCAGTCTTGGTTCACCAAGAGTTCACACGGCTTT,Distal Intergenic,15,103034395,103036852,2458,1,Hoxc4-201,27344,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,32,91,15423,ENSMUSG00000075394,mapped to different genes,15,103061537,103061809,273,*,273,19,0.586080586,0.8125,0.06959707,7.69E-12,CpGisland,TRUE,U13,Hc-P
7433,cg13702567,0.0000509,0.00000472,10.78071753,3.17E-23,gain,yes,-0.00000754,0.00000801,-0.940198995,0.34784752,neg,ns,0.007747592,0.002347936,3.299746081,0.001080503,pos,ns,2.966374103,-0.0000355,0.0000807,-0.439047919,0.660932673,neg,ns,0.123183282,Ostm1,Ostm1_Intron,10,42632493,42632542,42632541,42632542,50,-,AGAACCCTTCTCAATGAATACATTTACCCCCGAACGGTCTTTATTCTCCG,"Intron (Ostm1-202/Ostm1, intron 2 of 5)",10,42583835,42698323,114489,1,Ostm1-202,48658,Ostm1-202;Ostm1-203,Ostm1;Ostm1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,21,22,14628,ENSMUSG00000038280,conserved gene and region,10,42632523,42632647,125,*,125,9,0.528,1.057330827,0.072,0.00000584,CpGisland,TRUE,U3,Pr-B
14845,cg14937700,-0.0000127,0.0000121,-1.050263727,0.294414929,loss,ns,0.0000194,0.0000206,0.940139757,0.347877853,pos,ns,0.002656528,0.006037281,0.440020647,0.660228778,pos,ns,0.18030555,-0.000293575,0.000207622,-1.41398934,0.158368505,neg,ns,0.761617028,Gm45288,Gm45288_Intergenic_upstream,8,77952429,77952478,77952429,77952430,50,+,CGAATGTTGCTCCAAGGAGAAGGAGATGATTAGTTATAATTATACTCAGT,Distal Intergenic,8,78107960,78108110,151,1,Gm45288-201,-155482,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,7,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13235,cg12867015,-0.00000188,0.00000311,-0.605019035,0.545608964,loss,ns,0.00000497,0.00000528,0.939842819,0.348029923,pos,ns,-0.001606979,0.001548164,-1.037989864,0.300083717,neg,ns,0.522757569,0.0000564,0.0000532,1.059527868,0.290184278,pos,ns,0.94953829,Nlgn2,Nlgn2_Exon,11,69830534,69830583,69830582,69830583,50,+,ACATGCAGCAGCGGGATTTTTAAATCTACCTGTGTCTGGCGGATTGAGCG,"Exon (Nlgn2-201/Nlgn2, exon 2 of 7)",11,69823122,69834849,11728,2,Nlgn2-201,4266,Nlgn2-201;Nlgn2-202;Nlgn2-203;Nlgn2-204,Nlgn2;Nlgn2;Nlgn2;Nlgn2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,17,216856,ENSMUSG00000051790,conserved gene and region,11,69830545,69830622,78,*,78,8,0.512820513,1.575757576,0.102564103,0.00000181,CpGisland,TRUE,U11,Tr-P
21776,cg08582624,-0.0000361,0.0000071,-5.090959253,0.000000619,loss,yes,0.0000113,0.0000121,0.939798979,0.348052378,pos,ns,-0.003379625,0.003532956,-0.956599924,0.339514626,neg,ns,0.469141512,-0.0000683,0.000121498,-0.562559675,0.574141339,neg,ns,0.845028367,Ric3,Ric3_Intergenic_upstream,7,109111185,109111234,109111233,109111234,50,+,TATGCAAATTATTCATGCAGTGGGACAGCTAATTGCTTGCCAAGAGCCCG,Distal Intergenic,7,109034312,109083331,49020,2,Ric3-201,-27854,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,4,320360,ENSMUSG00000048330,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5016,cg04607114,0.0000059,0.00000538,1.097307675,0.27335853,gain,ns,-0.00000859,0.00000914,-0.939794467,0.348054689,neg,ns,-0.00513633,0.002678171,-1.917850056,0.056048603,neg,ns,1.251435208,-0.000145494,0.0000921,-1.579706109,0.115193966,neg,ns,0.822516454,Gmds,Gmds_Intron,13,31830434,31830483,31830482,31830483,50,+,AAGTCCGAGAGGGGGCCTTTCACATGACATCATAAAAGCCTGATTTATCG,"Intron (Gmds-201/Gmds, intron 9 of 10)",13,31819579,32338740,519162,2,Gmds-201,508257,Gmds-201,Gmds,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,5,218138,ENSMUSG00000038372,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2518,cg08453469,0.00000123,0.00000121,1.013525422,0.311599651,gain,ns,0.00000193,0.00000206,0.939744777,0.348080142,pos,ns,0.002117779,0.000602702,3.513806106,0.000507516,pos,ns,3.294550616,-0.0000494,0.0000207,-2.384156399,0.017719678,neg,ns,0.027169175,Kcnk5,Kcnk5_Exon,14,20181342,20181391,20181390,20181391,50,-,GTTTTTCTTGGCCTCCTTCCAGTGTGGCTCCTCCAGCACTTCGAAGATCG,Promoter (<=1kb),14,20140057,20181809,41753,2,Kcnk5-201,418,Kcnk5-201,Kcnk5,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,16529,ENSMUSG00000023243,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7072,cg05522906,-0.00000109,0.000000816,-1.334123522,0.183142605,loss,ns,-0.0000013,0.00000139,-0.939613319,0.348147485,neg,ns,0.000021,0.000406289,0.051625253,0.958860546,pos,ns,0.018244551,0.000000798,0.000014,0.05713117,0.954477513,pos,ns,0.024273915,Tfap2a,Tfap2a_Promoter,13,40742193,40742242,40742193,40742194,50,+,CGAGTTTGCACTTCTGTTTACAAAGCAATCCTGCCATCAAAAGAGGAACA,Promoter (3-4kb),13,40716605,40738376,21772,2,Tfap2a-203,-3817,Tfap2a-203,Tfap2a,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,57,21418,ENSMUSG00000021359,conserved gene but different region,13,40742059,40742194,136,*,136,11,0.661764706,0.748,0.080882353,0.000000102,CpGisland,TRUE,U13,Hc-P
22945,cg22573260,0.0000109,0.0000133,0.81749852,0.41427145,gain,ns,0.0000212,0.0000226,0.939568408,0.348170494,pos,ns,-0.004543343,0.006609587,-0.687386822,0.492352937,neg,ns,0.307723467,0.000170055,0.000227303,0.748143164,0.454940998,pos,ns,0.783753384,Gm5357,Gm5357_Intergenic_upstream,8,116315731,116315780,116315779,116315780,50,+,TATCTTTGACAACTTTGCCAGCTAATTTCCTATTTATATGTACCAAACCG,Distal Intergenic,8,116489186,116491109,1924,1,Gm5357-201,-173406,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,15,15,384868,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24207,cg04571367,-0.00000269,0.00000103,-2.607090447,0.009573066,loss,ns,0.00000165,0.00000175,0.939449743,0.348231292,pos,ns,0.000358174,0.000513384,0.697672292,0.485905093,pos,ns,0.313448549,-0.00000521,0.0000177,-0.295209458,0.768031495,neg,ns,0.969429839,Macf1,Macf1_Exon,4,123432902,123432951,123432950,123432951,50,-,TTGATCAGAATGTCAGCAGCACTATTCAATATTTCCAGCAGGGAGCGGCG,"Exon (Macf1-203/Macf1, exon 57 of 98)",4,123349633,123684360,334728,2,Macf1-203,251409,Gm12924-201;Macf1-203;Macf1-209;Macf1-215;Macf1-218;Macf1-217;Macf1-201;Macf1-205;Macf1-202;Macf1-206,Gm12924;Macf1;Macf1;Macf1;Macf1;Macf1;Macf1;Macf1;Macf1;Macf1,-2666;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,16,11426,ENSMUSG00000028649,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5925,cg15131523,0.0000819,0.00000738,11.09127607,2.68E-24,gain,yes,0.0000118,0.0000125,0.939246351,0.348335518,pos,ns,0.010588965,0.003673518,2.882513112,0.0042208,pos,ns,2.374605176,-0.0000143,0.000126332,-0.113421097,0.909770131,neg,ns,0.281008774,Osr2,Osr2_Exon,15,35302815,35302864,35302863,35302864,50,+,ACAGACATCAAGCCCTACAGCTGCGAGCAGTGCGGCAAAGTGTTCAGGCG,"Exon (Osr2-203/Osr2, exon 3 of 3)",15,35296098,35303304,7207,1,Osr2-203,6717,Osr2-203;Osr2-201;Osr2-205;Osr2-204,Osr2;Osr2;Osr2;Osr2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,6,107587,ENSMUSG00000022330,conserved gene and region,15,35302838,35302979,142,*,142,12,0.654929578,0.815311005,0.084507042,1.33E-08,CpGisland,TRUE,NA,NRS
1655,cg18039218,-0.000028,0.0000102,-2.755794641,0.006201484,loss,ns,-0.0000162,0.0000173,-0.939206208,0.348356091,neg,ns,-0.00330147,0.005062138,-0.652188746,0.514762697,neg,ns,0.288392933,-0.000114243,0.000174087,-0.656243565,0.51215422,neg,ns,0.780185253,Gm11824,Gm11824_Intergenic_upstream,4,14088434,14088483,14088482,14088483,50,+,ACTAATGTGTAAAATTTCCCAAAAATCTGCTCTGCCATTTCTGTTGCCCG,Distal Intergenic,4,14170066,14170911,846,1,Gm11824-201,-81583,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,433687,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25343,cg20732557,-0.00000513,0.00000217,-2.360162186,0.018886157,loss,ns,0.00000347,0.00000369,0.939128298,0.348396022,pos,ns,-0.000888041,0.001082308,-0.820506701,0.412557781,neg,ns,0.384515217,0.0000772,0.0000372,2.074582613,0.038850113,pos,ns,0.954534491,Nav1,Nav1_Exon,1,135465878,135465927,135465926,135465927,50,+,TTCCCTTGGGTCTCTCGGCCAGGGACAGGGTGCTCCCCATTTGGGAGCCG,"Exon (Nav1-201/Nav1, exon 10 of 30)",1,135434580,135585355,150776,2,Nav1-201,119428,Nav1-201;Nav1-202;Nav1-208;Nav1-205;Nav1-209;Nav1-206;Nav1-207,Nav1;Nav1;Nav1;Nav1;Nav1;Nav1;Nav1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,12,215690,ENSMUSG00000009418,mapped to different genes,1,135465776,135465997,222,*,222,16,0.630630631,0.746846089,0.072072072,2.79E-10,CpGisland,TRUE,NA,NRS
22453,cg02076583,-0.00000868,0.0000574,-0.151181246,0.879931075,loss,ns,-0.0000916,0.0000975,-0.939053192,0.348434518,neg,ns,0.007913589,0.02857421,0.276948663,0.7820041,pos,ns,0.10679097,0.000168382,0.000982665,0.171351936,0.864058839,pos,ns,0.617071883,Wwox,Wwox_Intron,8,114597677,114597726,114597725,114597726,50,-,ACAAATAACATTGAACATATTGATTAATGATCTCTGAGATTTGTATCTCG,"Intron (Wwox-201/Wwox, intron 5 of 8)",8,114439655,115352708,913054,1,Wwox-201,158022,Wwox-201;Wwox-207;Wwox-203,Wwox;Wwox;Wwox,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,32,32,80707,ENSMUSG00000004637,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2111,cg21999760,0.0000823,0.0000222,3.698752964,0.000256228,gain,ns,-0.0000355,0.0000378,-0.938897143,0.348514511,neg,ns,0.006031087,0.011071847,0.544722738,0.586335859,pos,ns,0.231853544,0.000307234,0.00038076,0.806897771,0.420344009,pos,ns,0.722987498,Skida1,Skida1_Promoter,2,18050760,18050809,18050760,18050761,50,+,CGTAACCGAGAGGCAGCAATGAACAATGCCTCGTCACAGCTAATACCATC,Promoter (1-2kb),2,18044083,18049051,4969,2,Skida1-202,-1709,Mllt10-201;Skida1-202;Skida1-201;Skida1-203;Skida1-204,Mllt10;Skida1;Skida1;Skida1;Skida1,0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,12,31,72668,ENSMUSG00000054074,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13577,cg24226732,0.00000462,0.00000239,1.934469244,0.053965185,gain,ns,-0.00000381,0.00000406,-0.938532949,0.348701248,neg,ns,-0.000544362,0.001189623,-0.45759218,0.647566005,neg,ns,0.188715958,-0.00000794,0.0000409,-0.194199212,0.846147096,neg,ns,0.960692126,Hat1,Hat1_Exon,2,71420679,71420728,71420679,71420680,50,+,CGTGGATGATGAAAGATGGCACTACTTTCTAGTGTAAGTACAGTTCTAAA,"Exon (Hat1-202/Hat1, exon 6 of 11)",2,71388958,71441622,52665,1,Hat1-202,31721,Hat1-202;Hat1-201;Hat1-204,Hat1;Hat1;Hat1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,12,107435,ENSMUSG00000027018,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7619,cg03777634,0.0000974,0.0000175,5.566814283,5.62E-08,gain,yes,-0.0000279,0.0000297,-0.938513205,0.348711373,neg,ns,0.027055525,0.008708492,3.106798032,0.002066289,pos,ns,2.684808879,-0.000418441,0.000299484,-1.397205265,0.163351098,neg,ns,0.321645591,Zbtb20,Zbtb20_Intron,16,43502501,43502550,43502549,43502550,50,+,TGTTTGTCACAAAGATTAATCCATTTTAACTGTACCTTGGAGTGCACCCG,"Intron (Zbtb20-211/Zbtb20, intron 4 of 4)",16,42907542,43569781,662240,1,Zbtb20-211,594959,Zbtb20-211;Zbtb20-217;Zbtb20-204;Zbtb20-215;Zbtb20-201;Zbtb20-203;Zbtb20-214;Zbtb20-213;Zbtb20-219;Zbtb20-216;Zbtb20-208;Zbtb20-207;Zbtb20-220;Zbtb20-206,Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,98,56490,ENSMUSG00000022708,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20255,cg05951656,0.0000503,0.00000704,7.138629474,6.73E-12,gain,yes,-0.0000112,0.000012,-0.938512233,0.348711872,neg,ns,0.008790605,0.003505567,2.507612898,0.012665938,pos,ns,1.897362629,-0.00021898,0.000120556,-1.816413183,0.070272731,neg,ns,0.193800434,Hoxc5,Hoxc5_Intron,15,102972040,102972089,102972040,102972041,50,-,CGGGTTTAATGTAAGTGAGAGACCATAACGTTGATTTAAATATTATCCAG,"Intron (Hoxc5-202/Hoxc5, intron 1 of 1)",15,102967443,103015676,48234,1,Hoxc5-202,4597,Hoxc10-201;Hoxc5-202;Hoxc9-202;Hoxc9-201,Hoxc10;Hoxc5;Hoxc9;Hoxc9,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,Intron,46,134,15424,ENSMUSG00000022485,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
21871,cg18013240,0.000000121,0.00000178,0.06793602,0.945880361,gain,ns,0.00000284,0.00000303,0.938487743,0.348724432,pos,ns,0.002220343,0.000887771,2.501030109,0.012898952,pos,ns,1.889445576,-0.000055,0.0000305,-1.800296052,0.072785922,neg,ns,0.078372834,Gna13,Gna13_Exon,11,109363141,109363190,109363189,109363190,50,-,GGGCGAGAGCGGCAAGTCCACCTTCCTGAAGCAGATGCGGATCATCCACG,Promoter (<=1kb),11,109362831,109380475,17645,1,Gna13-202,310,Gna13-202;Gna13-201,Gna13;Gna13,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,14674,ENSMUSG00000020611,conserved gene and region,11,109362490,109363576,1087,*,1087,134,0.732290708,0.921215571,0.123275069,6.35E-115,CpGisland,TRUE,U1,Pr-A
20305,cg18410429,0.0000262,0.00000811,3.233656019,0.001353928,gain,ns,0.0000129,0.0000138,0.938313027,0.348814042,pos,ns,0.007155676,0.004037085,1.772485948,0.077295986,pos,ns,1.111843061,-0.0000878,0.000138835,-0.632653592,0.52742625,neg,ns,0.104206796,Dcakd,Dcakd_Intergenic_downstream,11,102991947,102991996,102991947,102991948,50,-,CGACTTGTTCTATCGACATGCTGGTTAGCTGGAAATTGTATTGGAATCTA,Distal Intergenic,11,102994049,102997548,3500,2,Dcakd-203,5601,Dcakd-201;Dcakd-203,Dcakd;Dcakd,0;5552,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,4,68087,ENSMUSG00000020935,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
23813,cg03190580,0.0000133,0.0000025,5.331872482,0.000000188,gain,yes,-0.00000398,0.00000425,-0.938156795,0.348894184,neg,ns,0.00168455,0.001244037,1.354098965,0.176691068,pos,ns,0.752785404,-0.0000557,0.0000428,-1.301635226,0.194007553,neg,ns,0.010582741,Lhx5,Lhx5_fiveUTR,5,120431854,120431903,120431854,120431855,50,-,CGTCACCAAATCTGAATAAGGATGCGCGAATTACGCGGCGACCAGACAAA,Promoter (<=1kb),5,120431699,120441223,9525,1,Lhx5-201,155,Lhx5-201,Lhx5,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,14,16873,ENSMUSG00000029595,conserved gene but different region,5,120431812,120432498,687,*,687,67,0.647743814,0.929766089,0.097525473,3.23E-50,CpGisland,TRUE,U13,Hc-P
23384,cg20369157,-1.68E-08,0.00000553,-0.003034912,0.997580446,loss,ns,0.00000881,0.00000939,0.938118389,0.348913888,pos,ns,-0.000895313,0.002751708,-0.325366251,0.745123384,neg,ns,0.127771807,0.0000596,0.0000946,0.630038939,0.52913322,pos,ns,0.875597035,Cmc1,Cmc1_Intergenic_upstream,9,118227846,118227895,118227894,118227895,50,+,AACCACAGTGTCAAAGGGTTTAGCTACTCGAGAAATGAGCACAGACTGCG,Distal Intergenic,9,118064522,118150177,85656,2,Cmc1-201,-77669,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,3,67899,ENSMUSG00000039163,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23604,cg01198746,-0.00005,0.0000111,-4.484776751,0.0000103,loss,ns,-0.0000177,0.0000189,-0.937700198,0.349128473,neg,ns,-0.010571447,0.005544045,-1.906811267,0.057469323,neg,ns,1.240563918,0.000114268,0.000190659,0.599330933,0.549389978,pos,ns,0.77071222,Vps18,Vps18_Intergenic_downstream,2,119300826,119300875,119300826,119300827,50,-,CGGAAATTCCCAGAGGTCAGAGGAGGGAAACGGTTAATTCCTTTTATTCA,Downstream (2-3kb),2,119288787,119298326,9540,1,Vps18-203,12088,Vps18-201;Vps18-203,Vps18;Vps18,0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,3,4,228545,ENSMUSG00000034216,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20326,cg08656982,-0.00000494,0.00000398,-1.240127122,0.215866225,loss,ns,-0.00000634,0.00000676,-0.937646586,0.349155989,neg,ns,0.002536382,0.00198178,1.27985049,0.20155468,pos,ns,0.695607113,-0.000139114,0.0000682,-2.041200164,0.042077493,neg,ns,0.867135105,Unc79,Unc79_Exon,12,102998532,102998581,102998580,102998581,50,-,ACCCCATCTCTAAGACCGCAGGTCAGTTCCATCAACCCTACTGTTACTCG,"Exon (Unc79-202/Unc79, exon 3 of 49)",12,102948859,103184001,235143,1,Unc79-202,49673,Unc79-202;Unc79-208;Unc79-209;Unc79-204;Unc79-201;Unc79-205,Unc79;Unc79;Unc79;Unc79;Unc79;Unc79,0;0;-2486;-3257;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,24,217843,ENSMUSG00000021198,conserved gene and region,12,102998516,102998638,123,*,123,9,0.577235772,1.02690167,0.073170732,0.00000513,CpGisland,TRUE,U15,NS
24234,cg24238772,-0.0000149,0.00000359,-4.169826994,0.0000396,loss,ns,0.00000571,0.00000609,0.937593485,0.349183244,pos,ns,-0.001454735,0.001784374,-0.81526359,0.415547357,neg,ns,0.381379476,0.000120576,0.0000614,1.964908256,0.050317635,pos,ns,0.941717043,Abcb9,Abcb9_Exon,5,124083124,124083173,124083172,124083173,50,-,TGTTCAGTCTGGCAAATATGAGGGTAAAAATGCCGCCCCGAATACCTGCG,"Exon (Abcb9-201/Abcb9, exon 4 of 12)",5,124061530,124095798,34269,2,Abcb9-201,12625,Abcb9-201;Abcb9-206;Abcb9-202;Abcb9-204;Abcb9-205;Abcb9-203,Abcb9;Abcb9;Abcb9;Abcb9;Abcb9;Abcb9,0;-3993;0;0;-3304;12613,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,56325,ENSMUSG00000029408,conserved gene and region,5,124083099,124083222,124,*,124,10,0.540322581,1.135531136,0.080645161,0.000000493,CpGisland,TRUE,U11,Tr-P
23661,cg00864083,-0.00000724,0.00000203,-3.559554922,0.000429703,loss,ns,0.00000324,0.00000346,0.93758859,0.349185757,pos,ns,0.000752048,0.001012675,0.742635873,0.45826452,pos,ns,0.338883766,-0.0000252,0.0000348,-0.724880585,0.469072069,neg,ns,0.969021328,Foxj3,Foxj3_Exon,4,119610045,119610094,119610045,119610046,50,+,CGGGAAGTGCCTCTCCAACTCTGGCAATCAACACTGTGACTAACAAAGTA,"Exon (Foxj3-201/Foxj3, exon 6 of 13)",4,119539661,119629119,89459,1,Foxj3-201,70384,Foxj3-201;Foxj3-202,Foxj3;Foxj3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,230700,ENSMUSG00000032998,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14686,cg09578221,0.0000408,0.0000131,3.127114984,0.001932778,gain,ns,0.0000208,0.0000222,0.937574769,0.349192851,pos,ns,0.016572685,0.006496791,2.550903085,0.011224694,pos,ns,1.949825484,-0.000266004,0.000223424,-1.190576772,0.234730652,neg,ns,0.210714684,Ctnna2,Ctnna2_Exon,6,77243807,77243856,77243807,77243808,50,-,CGGCCAGTTCACGGGGTTAATGCAGCTCACGTGGCTCTATCTGGATCACA,"Exon (Lrrtm1-201/Lrrtm1, exon 2 of 3)",6,76881637,77979699,1098063,2,Ctnna2-204,735843,Ctnna2-204;Ctnna2-205;Ctnna2-202;Ctnna2-201;Lrrtm1-201;Lrrtm1-202;Lrrtm1-203;Lrrtm1-204,Ctnna2;Ctnna2;Ctnna2;Ctnna2;Lrrtm1;Lrrtm1;Lrrtm1;Lrrtm1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,16,24,12386,ENSMUSG00000063063,conserved gene and region,6,77243660,77243918,259,*,259,23,0.633204633,0.885930994,0.088803089,1.29E-16,CpGisland,TRUE,U13,Hc-P
10545,cg08952178,-0.0000109,0.0000123,-0.882975417,0.377933754,loss,ns,0.0000196,0.0000209,0.937552655,0.349204202,pos,ns,-0.006911547,0.00613637,-1.126325006,0.260899129,neg,ns,0.583527371,0.000264908,0.000211029,1.255315985,0.2103095,pos,ns,0.845516015,Gm12469,Gm12469_Intergenic_downstream,4,54206172,54206221,54206220,54206221,50,+,GATTGATTTTTTCTTTGAGTAGACATGCTTCACAGAAGTACCCTTTCCCG,Distal Intergenic,4,54235670,54235876,207,2,Gm12469-201,29655,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,9,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13543,cg24302356,-0.00000408,0.00000447,-0.913654051,0.3616087,loss,ns,-0.00000711,0.00000759,-0.937456292,0.349253668,neg,ns,-0.000739306,0.002222942,-0.332579913,0.739676192,neg,ns,0.13095836,-0.0000776,0.0000764,-1.015472895,0.310672348,neg,ns,0.914943731,Gfra2,Gfra2_Intergenic_downstream,14,71229232,71229281,71229232,71229233,50,+,CGCTTGATTGGATGTTGTTACAAATCACTCATTGTCATACAAGGCATTTG,Distal Intergenic,14,70941886,70979823,37938,1,Gfra2-202,287346,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,14586,ENSMUSG00000022103,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13279,cg00020468,-0.00000466,0.00000271,-1.720011079,0.086428435,loss,ns,0.00000432,0.0000046,0.937397662,0.349283766,pos,ns,-0.000190024,0.001348932,-0.140869645,0.888064415,neg,ns,0.051555532,-0.0000114,0.0000464,-0.245991795,0.805851375,neg,ns,0.908233868,Ank3,Ank3_Exon,10,69992409,69992458,69992409,69992410,50,-,CGCAGTGGTGCAATTGACATGAGCAAGAGGGATTTTGTTGAAGAGAGGCT,"Exon (Ank3-244/Ank3, exon 6 of 9)",10,69398996,70023957,624962,1,Ank3-247,593413,Ank3-247;Ank3-231;Ank3-210;Ank3-239;Ank3-240;Ank3-220;Ank3-201;Ank3-202;Ank3-203;Ank3-204;Ank3-206;Ank3-233;Ank3-221;Ank3-232;Ank3-228;Ank3-205;Ank3-215;Ank3-237;Ank3-242;Ank3-208;Ank3-227;Ank3-207;Ank3-230;Ank3-219;Ank3-244;Ank3-213;Ank3-224;Ank3-236;Ank3-225;Ank3-243;Ank3-235,Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,13,11735,ENSMUSG00000069601,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U14,Hc-H
7882,cg25273516,-0.00000275,0.00000136,-2.013648169,0.044910305,loss,ns,0.00000217,0.00000232,0.937274482,0.349347007,pos,ns,0.000237618,0.000679326,0.349784841,0.726737689,pos,ns,0.138622317,-0.0000196,0.0000234,-0.839361279,0.401913418,neg,ns,0.969702506,Runx2,Runx2_threeUTR,17,44607980,44608029,44608028,44608029,50,-,ATCAGCGTCAACACCATCATTCTGGTTAGGCAAATTTGGATTTAATAGCG,3' UTR,17,44495987,44736176,240190,2,Runx2-212,128147,Runx2-212;Runx2-214;Runx2-203;Runx2-202;Runx2-213;Runx2-204;Runx2-210;Runx2-211;Runx2-207;Runx2-201;Runx2-209,Runx2;Runx2;Runx2;Runx2;Runx2;Runx2;Runx2;Runx2;Runx2;Runx2;Runx2,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,10,20,12393,ENSMUSG00000039153,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4858,cg22061411,-0.00000404,0.00000295,-1.367287735,0.17252569,loss,ns,-0.0000047,0.00000502,-0.937183127,0.349393914,neg,ns,0.001479559,0.001469487,1.006853775,0.314790293,pos,ns,0.501978668,-0.000112018,0.0000505,-2.21662199,0.027374488,neg,ns,0.954107619,Zbtb44,Zbtb44_Exon,9,31066700,31066749,31066748,31066749,50,+,ACCAGGGCTTACTCGCTAAAGATGCATCGCCTAAAGCATGAAGGTAAACG,"Exon (Zbtb44-205/Zbtb44, exon 5 of 6)",9,31030644,31070233,39590,1,Zbtb44-205,36056,Zbtb44-205;Zbtb44-201;Zbtb44-206;Zbtb44-202;Zbtb44-204,Zbtb44;Zbtb44;Zbtb44;Zbtb44;Zbtb44,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,15,235132,ENSMUSG00000047412,conserved gene and region,9,31066713,31066901,189,*,189,12,0.486772487,1.07641196,0.063492064,0.00000032,CpGisland,TRUE,U10,Tr-S
21283,cg23047311,-0.0000356,0.00000978,-3.640946064,0.000318212,loss,ns,0.0000156,0.0000166,0.937075692,0.349449082,pos,ns,-0.00476457,0.004868016,-0.9787497,0.328466854,neg,ns,0.483508449,-0.00022399,0.000167411,-1.337966524,0.181887979,neg,ns,0.471467444,Gm5187,Gm5187_Intron,12,107085281,107085330,107085329,107085330,50,+,CTGAAATTTAGAATTATTGTTTCCTTCTAACAGAAGACTCATTTTCCACG,"Intron (Gm16086-201/Gm16086-201, intron 1 of 2)",12,107205076,107206066,991,2,Gm5187-201,120736,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,10,382635,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4916,cg04825752,-0.0000064,0.00000609,-1.051699344,0.29375662,loss,ns,0.00000969,0.0000103,0.937027684,0.349473736,pos,ns,-0.001529193,0.003029553,-0.504758533,0.614087058,neg,ns,0.211770056,-0.0000546,0.000104186,-0.524074883,0.600600948,neg,ns,0.888764873,Dnah1,Dnah1_Exon,14,31284439,31284488,31284487,31284488,50,-,TTGTCCAGCTTGCTGTCAATGAAGTCCTGGGTCTGGTTGGCTGAAGTGCG,"Exon (Dnah1-201/Dnah1, exon 43 of 78)",14,31260375,31323896,63522,2,Dnah1-201,39408,Dnah1-201,Dnah1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,110084,ENSMUSG00000019027,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27608,cg00066554,-0.00000281,0.00000348,-0.807805397,0.419822034,loss,ns,0.00000554,0.00000591,0.937023307,0.349475984,pos,ns,0.001335334,0.001731689,0.771116746,0.441225075,pos,ns,0.355339815,-0.0000372,0.0000596,-0.624342409,0.53286194,neg,ns,0.919508649,Vangl2,Vangl2_Exon,1,172013096,172013145,172013144,172013145,50,+,AGCTGCGGGAGTGGCCCGACTTGTAGGAATAGCCCGAGTACTGGGACTCG,"Exon (Vangl2-201/Vangl2, exon 2 of 8)",1,172000960,172027295,26336,2,Vangl2-201,14150,Vangl2-201;Vangl2-202;Vangl2-203;Vangl2-205;Vangl2-206;Vangl2-204,Vangl2;Vangl2;Vangl2;Vangl2;Vangl2;Vangl2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,6,93840,ENSMUSG00000026556,conserved gene and region,1,172013064,172013193,130,*,130,14,0.669230769,0.965005302,0.107692308,1.85E-11,CpGisland,TRUE,U11,Tr-P
21969,cg08168552,-0.000000477,0.00000324,-0.147179149,0.883086291,loss,ns,-0.00000516,0.00000551,-0.937004347,0.349485721,neg,ns,-0.001931093,0.001613868,-1.196562482,0.232391443,neg,ns,0.633779867,0.00012099,0.0000555,2.17996755,0.030011911,pos,ns,0.931415257,Faf1,Faf1_Intron,4,109859075,109859124,109859075,109859076,50,-,CGTCTGCATTCGCTTGTCTTCTCAGCATGGATGTTTAATCTTCCTAGGCT,"Intron (Faf1-201/Faf1, intron 12 of 18)",4,109676588,109963960,287373,1,Faf1-201,182487,Faf1-201;Faf1-203,Faf1;Faf1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,24,14084,ENSMUSG00000010517,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14710,cg24449120,0.0000824,0.0000192,4.286670399,0.0000242,gain,ns,-0.0000306,0.0000327,-0.936956729,0.349510176,neg,ns,0.020491337,0.009566282,2.142037723,0.032969358,pos,ns,1.481889503,-0.000437294,0.000328984,-1.329228171,0.18475011,neg,ns,0.473925059,Gm21816,Gm21816_Intron,16,77421565,77421614,77421565,77421566,50,+,CGATATTCATTCGATCGATGAGTGAAAAGGCACAATGGCAAAATCAGACA,"Intron (Mir99ahg-207/Mir99ahg-207, intron 4 of 7)",16,77400847,77401208,362,1,Gm21816-201,20718,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,8,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
5904,cg19803300,-0.00000342,0.00000688,-0.496670229,0.619773633,loss,ns,-0.0000109,0.0000117,-0.936823957,0.349578371,neg,ns,-0.000902576,0.003423451,-0.263645105,0.792228562,neg,ns,0.101149504,-0.0000914,0.000117732,-0.776481832,0.438056584,neg,ns,0.894336133,Ctnna1,Ctnna1_fiveUTR,18,35213658,35213707,35213706,35213707,50,-,GCCAAACTTCGCAAACGATTTGTGCTCAAATCCAGAAACTCCAGACTACG,5' UTR,18,35118859,35254779,135921,1,Ctnna1-201,94799,Ctnna1-201;Ctnna1-204;Ctnna1-210;Ctnna1-203;Ctnna1-202;Lrrtm2-201;Lrrtm2-202;Lrrtm2-203,Ctnna1;Ctnna1;Ctnna1;Ctnna1;Ctnna1;Lrrtm2;Lrrtm2;Lrrtm2,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,6,13,12385,ENSMUSG00000037815,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12316,cg14435788,-0.0000314,0.00000649,-4.832114264,0.00000213,loss,ns,-0.0000103,0.000011,-0.936730929,0.349626157,neg,ns,-0.003849567,0.003229477,-1.192009226,0.234169331,neg,ns,0.630469984,0.0000589,0.000111061,0.530573126,0.596094491,pos,ns,0.944399535,Ercc6l2,Ercc6l2_Intergenic_downstream,13,63918914,63918963,63918914,63918915,50,+,CGCCCACCAGACTTCATACCACCAGCTGGAAGTGGCTTTCTGGTTTATGG,Distal Intergenic,13,63894027,63897884,3858,1,Ercc6l2-211,24887,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,76251,ENSMUSG00000021470,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6549,cg05349874,-0.0000155,0.00000602,-2.572335195,0.010566846,loss,ns,0.00000958,0.0000102,0.936650651,0.349667397,pos,ns,0.001862913,0.002997821,0.621422379,0.534778441,pos,ns,0.27182611,-0.000134009,0.000103095,-1.29986204,0.194613954,neg,ns,0.880609537,Zfp536,Zfp536_Intron,7,37664443,37664492,37664443,37664444,50,-,CGAACTAATCACTAATGAAGTTTGGGGTGAGCTATTTTGAAAGCAGCCCA,"Intron (Zfp536-202/Zfp536, intron 3 of 6)",7,37479104,37769624,290521,2,Zfp536-202,105132,Zfp536-202;Zfp536-201;Zfp536-203;Zfp536-206;Zfp536-209;Zfp536-208,Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,73,112,243937,ENSMUSG00000043456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20461,cg14528339,0.0000784,0.00000662,11.85692726,5.39E-27,gain,yes,-0.0000105,0.0000112,-0.936636465,0.349674685,neg,ns,0.009519271,0.003292937,2.890814499,0.004113789,pos,ns,2.385757994,0.0000385,0.000113244,0.33984466,0.734203655,pos,ns,0.062051432,Hoxc4,Hoxc4_Intergenic_downstream,15,103061664,103061713,103061664,103061665,50,-,CGCCAGCCTCCGCAGCCGCCTTTGTACGCGTGATTTATGACTTCAATCTT,Distal Intergenic,15,103034395,103036852,2458,1,Hoxc4-201,27318,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,32,91,15423,ENSMUSG00000075394,mapped to different genes,15,103061537,103061809,273,*,273,19,0.586080586,0.8125,0.06959707,7.69E-12,CpGisland,TRUE,U13,Hc-P
13074,cg12577973,-0.0000132,0.00000867,-1.526393055,0.127931602,loss,ns,-0.0000138,0.0000147,-0.936569241,0.349709222,neg,ns,-0.011874668,0.004314414,-2.752324748,0.006265969,neg,ns,2.203011779,0.000151682,0.000148372,1.02230784,0.307432334,pos,ns,0.095772054,Chd3,Chd3_fiveUTR,11,69369370,69369419,69369370,69369371,50,+,CGTCCCTCAGAGGGGAAGCCATCCTGTGGCTCTGGCCCCCCCACCACCCC,Promoter (<=1kb),11,69343273,69369406,26134,2,Chd3-202,0,Chd3-202;Chd3-201;Chd3-204,Chd3;Chd3;Chd3,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,26,216848,ENSMUSG00000018474,conserved gene but different region,11,69368358,69369371,1014,*,1014,121,0.741617357,0.876341897,0.119329389,7.03E-102,CpGisland,TRUE,U1,Pr-A
17324,cg20308863,0.0000279,0.00000861,3.239867182,0.001325733,gain,ns,0.0000137,0.0000146,0.936348097,0.349822851,pos,ns,-0.004349868,0.00428692,-1.014683878,0.311047823,neg,ns,0.507172834,0.000280714,0.000147427,1.904088711,0.057824312,pos,ns,0.628677338,Gm5356,Gm5356_Intergenic_upstream,8,89702033,89702082,89702033,89702034,50,-,CGGTCACGAGAGCCCCCAGATCAATCAGCTTGTCAACAGGCAGACGAAAT,Distal Intergenic,8,89186946,89187560,615,2,Gm5356-201,-514522,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,23,23,384862,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15125,cg12116534,0.00000206,0.00000244,0.841869041,0.40051024,gain,ns,0.00000388,0.00000415,0.936334403,0.349829889,pos,ns,0.00100147,0.001215551,0.823881098,0.410640523,pos,ns,0.386538195,-0.0000741,0.0000418,-1.773097761,0.077194359,neg,ns,0.947940837,Gm48470,Gm48470_Intergenic_downstream,13,79256773,79256822,79256821,79256822,50,+,ATTAATCCCTGCAGAGGGGACAATGGGAATCGTAAATTATCCATGTGCCG,Distal Intergenic,13,79441143,79441407,265,2,Gm48470-201,184585,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,20,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21698,cg03640592,-0.000000518,0.00000361,-0.143534516,0.88596131,loss,ns,0.00000574,0.00000613,0.936331259,0.349831504,pos,ns,0.003058059,0.001795374,1.703299628,0.089514239,pos,ns,1.048107874,-0.000110901,0.0000617,-1.796184321,0.073438777,neg,ns,0.926784887,Zfhx3,Zfhx3_Intron,8,108905683,108905732,108905731,108905732,50,+,GAGATGGGCCTGCGATTATTTCCCATAAATGACAACACAATCACATCACG,"Intron (Zfhx3-204/Zfhx3, intron 10 of 15)",8,107942644,108961630,1018987,1,Zfhx3-204,963039,Zfhx3-204;Zfhx3-201,Zfhx3;Zfhx3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,114,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5356,cg09849916,-0.00000394,0.0000047,-0.838402322,0.402450769,loss,ns,0.00000748,0.00000799,0.936180713,0.349908873,pos,ns,-0.003426439,0.00234162,-1.463277087,0.144404744,neg,ns,0.84041854,0.000141501,0.0000805,1.757161075,0.079877488,pos,ns,0.902010012,Lmx1b,Lmx1b_Intron,2,33615549,33615598,33615549,33615550,50,-,CGCCATTAAAATGCCAAACAATAAACTACCAGGCTGCAAATTAGATCAGT,"Intron (Lmx1b-201/Lmx1b, intron 2 of 7)",2,33560965,33640608,79644,2,Lmx1b-201,25010,Lmx1b-201;Lmx1b-203;Lmx1b-204;Lmx1b-202,Lmx1b;Lmx1b;Lmx1b;Lmx1b,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,26,16917,ENSMUSG00000038765,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
8302,cg23023864,0.000086,0.0000129,6.673812945,1.15E-10,gain,yes,-0.0000205,0.0000219,-0.936057497,0.349972205,neg,ns,0.030712059,0.006416244,4.786610509,0.00000263,pos,ns,5.580023965,-0.000569929,0.000220654,-2.582908474,0.010255177,neg,ns,0.467447558,Zeb2,Zeb2_Exon,2,44989019,44989068,44989067,44989068,50,-,CCGAGTGTGAGAAGCGCTTGCCACATTTATCACACTGATAGGGCTTCTCG,"Exon (Zeb2-212/Zeb2, exon 11 of 11)",2,44983632,45117395,133764,2,Zeb2-212,128327,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,21,158,24136,ENSMUSG00000026872,conserved gene but different region,2,44988892,44989117,226,*,226,18,0.592920354,0.906215193,0.079646018,2.95E-12,CpGisland,TRUE,U12,Tr-I
1658,cg15827607,-0.000000606,0.00000237,-0.255405295,0.798579454,loss,ns,0.00000377,0.00000403,0.935868375,0.350069427,pos,ns,-0.000447917,0.001180068,-0.379568596,0.70452556,neg,ns,0.152103246,0.0000179,0.0000406,0.439875303,0.660333934,pos,ns,0.943281372,Zfp521,Zfp521_Intergenic_upstream,18,14091318,14091367,14091366,14091367,50,+,AGGAAAAACAAATCACTCAGTTACTGACACAATATTGCATCAACACTCCG,Distal Intergenic,18,13687013,13972787,285775,2,Zfp521-201,-118531,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,81,225207,ENSMUSG00000024420,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9165,cg16820522,-0.000126595,0.0000101,-12.59309127,1.20E-29,loss,yes,-0.000016,0.0000171,-0.935863769,0.350071795,neg,ns,0.004672731,0.005003335,0.933923257,0.351070344,pos,ns,0.454605855,-0.000329696,0.000172064,-1.916121395,0.056269126,neg,ns,0.820727789,Gm2089,Gm2089_Intergenic_downstream,12,47317204,47317253,47317252,47317253,50,+,CAGCTCTCTGAAACAAAACAAAAACAAAATGTACCCAGGTTTCAGTTACG,Distal Intergenic,12,47199991,47200469,479,1,Gm2089-201,117213,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,100039190,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9469,cg07445572,-0.00000291,0.0000016,-1.813025995,0.070794882,loss,ns,-0.00000255,0.00000272,-0.935857035,0.350075256,neg,ns,-0.002384346,0.000798246,-2.986983366,0.003042264,neg,ns,2.516803104,0.0000541,0.0000275,1.970176975,0.049707843,pos,ns,0.046628921,Acvr2a,Acvr2a_fiveUTR,2,48814657,48814706,48814705,48814706,50,+,TCCGAATATGTTTTATGACGGTTGATTTTACACCAGGAGGTTTGTCTCCG,Promoter (<=1kb),2,48814109,48903269,89161,1,Acvr2a-201,548,Acvr2a-201;Gm13489-201,Acvr2a;Gm13489,0;-4102,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,7,10,11480,ENSMUSG00000052155,conserved gene and region,2,48814621,48814980,360,*,360,29,0.588888889,0.929901131,0.080555556,1.40E-19,CpGisland,TRUE,U1,Pr-A
16561,cg22413161,0.00000664,0.00000746,0.891075788,0.373579578,gain,ns,-0.0000119,0.0000127,-0.935832748,0.350087743,neg,ns,-0.004587263,0.003711118,-1.236086727,0.217362103,neg,ns,0.662816174,0.000158363,0.000127625,1.24084687,0.215600536,pos,ns,0.194473356,Camkmt,Camkmt_Intron,17,85454870,85454919,85454918,85454919,50,+,GTGAAGAGATTCATGAATTTTAATTTTGCCCTCTGCATTAGTGCCTCGCG,"Intron (Camkmt-201/Camkmt, intron 10 of 10)",17,85090552,85458588,368037,1,Camkmt-201,364318,Camkmt-201,Camkmt,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,41,44,73582,ENSMUSG00000071037,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
5392,cg04861677,-0.00000104,0.000000905,-1.148907167,0.251479953,loss,ns,0.00000144,0.00000154,0.935820196,0.350094197,pos,ns,0.001022935,0.000450422,2.271057858,0.023829009,pos,ns,1.622894028,-0.0000183,0.0000155,-1.181335165,0.238375085,neg,ns,0.975949194,Mvb12b,Mvb12b_Intron,2,33771767,33771816,33771815,33771816,50,+,GATAGACTTCTATGAACTGGTGAACACAGAACAGCAGAGCGTTTTTATCG,"Intron (Mvb12b-201/Mvb12b, intron 7 of 9)",2,33729953,33887946,157994,2,Mvb12b-201,116130,Mvb12b-201,Mvb12b,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,28,47,72543,ENSMUSG00000038740,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10783,cg24780670,-0.000000151,0.00000343,-0.044057906,0.964886611,loss,ns,-0.00000546,0.00000583,-0.935588057,0.35021356,neg,ns,-0.000507441,0.00170872,-0.296971255,0.766687339,neg,ns,0.115381709,-0.0000361,0.0000588,-0.613581212,0.539942054,neg,ns,0.845066264,Sparc,Sparc_Exon,11,55401963,55402012,55401963,55401964,50,+,CGATGTAGTCCAGGTGGAGCTTGTGGCCCTTCTTGGTGCCCTCCAGGGTG,"Exon (Sparc-202/Sparc, exon 6 of 10)",11,55394500,55419898,25399,2,Sparc-202,17886,Sparc-202;Sparc-201;Sparc-203;Sparc-207;Sparc-209;Sparc-208;Sparc-205;Sparc-206,Sparc;Sparc;Sparc;Sparc;Sparc;Sparc;Sparc;Sparc,0;0;-2389;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,20692,ENSMUSG00000018593,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
287,cg01608205,-0.00000195,0.00000108,-1.808124913,0.071556062,loss,ns,0.00000171,0.00000183,0.935461794,0.350278494,pos,ns,0.000663948,0.00053697,1.236470242,0.217219793,pos,ns,0.663100605,-0.0000316,0.0000185,-1.70896642,0.088458015,neg,ns,0.97412654,Atad2b,Atad2b_threeUTR,12,5013916,5013965,5013916,5013917,50,+,CGGTTGTTTCTCAGGGATGTAACCAAGAGGCTGGCCACAGATAAACGCTT,3' UTR,12,4917404,5047394,129991,1,Atad2b-201,96512,Atad2b-201;Atad2b-203,Atad2b;Atad2b,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,7,320817,ENSMUSG00000052812,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21325,cg22756585,-0.00000247,0.00000317,-0.779654848,0.436188881,loss,ns,-0.00000504,0.00000539,-0.935008484,0.350511684,neg,ns,-0.001930109,0.001578714,-1.222582546,0.222416092,neg,ns,0.652833794,0.0000751,0.0000543,1.382759729,0.167733783,pos,ns,0.927370291,Nfat5,Nfat5_threeUTR,8,107339190,107339239,107339238,107339239,50,-,ACACTGAGGTACCTCGTAAATCACGAAAACGAAATCCAAAGCAGAGGCCG,3' UTR,8,107293470,107372227,78758,1,Nfat5-213,45720,Nfat5-213;Nfat5-214;Nfat5-206;Nfat5-211;Nfat5-203;Nfat5-201;Nfat5-209;Nfat5-205;Nfat5-202;Nfat5-207,Nfat5;Nfat5;Nfat5;Nfat5;Nfat5;Nfat5;Nfat5;Nfat5;Nfat5;Nfat5,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,13,17,54446,ENSMUSG00000003847,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8766,cg25291437,-0.00000604,0.00000124,-4.860881771,0.0000019,loss,ns,0.00000197,0.00000211,0.934984226,0.350524166,pos,ns,-0.000686633,0.000618514,-1.110132834,0.267802154,neg,ns,0.572185933,0.0000481,0.0000213,2.2600995,0.024508715,pos,ns,0.969217509,Lcorl,Lcorl_threeUTR,5,45730399,45730448,45730447,45730448,50,+,AGTGCAAAAGCATTGAAGTGCTTTACTACAAATTACAACCTAGAAACACG,3' UTR,5,45697181,45857615,160435,2,Lcorl-202,127167,Lcorl-202;Lcorl-212;Lcorl-210;Lcorl-205;Lcorl-211;Lcorl-204;Lcorl-201,Lcorl;Lcorl;Lcorl;Lcorl;Lcorl;Lcorl;Lcorl,0;0;0;0;-2821;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,5,9,209707,ENSMUSG00000015882,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18528,cg07048527,0.000125617,0.0000136,9.248898309,3.80E-18,gain,yes,-0.0000216,0.0000231,-0.934871924,0.350581952,neg,ns,0.024218777,0.006759795,3.582768106,0.000394644,pos,ns,3.403795035,-0.000737516,0.000232469,-3.172539038,0.001662569,neg,ns,0.174773367,Hoxb9,Hoxb9_Exon,11,96274671,96274720,96274671,96274672,50,+,CGCTGTCCCTACACCAAATACCAGACGCTGGAGCTAGAGAAGGAGTTTCT,"Exon (Hoxb9-201/Hoxb9, exon 2 of 2)",11,96271457,96276595,5139,1,Hoxb9-201,3214,Hoxb9-201;Hoxb9-202,Hoxb9;Hoxb9,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,22,15417,ENSMUSG00000020875,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
1230,cg08932990,-0.0000407,0.00000961,-4.233969244,0.0000303,loss,ns,0.0000153,0.0000163,0.934827833,0.350604641,pos,ns,0.015989868,0.004781189,3.344328823,0.000926067,pos,ns,3.033357629,-0.000622773,0.000164425,-3.78758611,0.000182689,neg,ns,0.409097474,Bcor,Bcor_Intron,X,12082322,12082371,12082370,12082371,50,+,ATAGTTATAAAAACAGCCCTTCTCAAAGCAGAAGTGAAACATCTCTACCG,"Intron (Bcor-201/Bcor, intron 1 of 13)",20,12036743,12160355,123613,2,Bcor-201,77984,Bcor-202;Bcor-203;Bcor-204;Bcor-206;Bcor-201;Bcor-207;Bcor-205,Bcor;Bcor;Bcor;Bcor;Bcor;Bcor;Bcor,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,56,74,71458,ENSMUSG00000040363,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
9670,cg06459398,-0.00000919,0.00000478,-1.925313549,0.055104781,loss,ns,0.00000758,0.00000811,0.934826638,0.350605256,pos,ns,-0.001604971,0.002376987,-0.675212557,0.500044039,neg,ns,0.300991746,-0.000120076,0.0000817,-1.468920093,0.142868482,neg,ns,0.908681605,Tenm3,Tenm3_Intron,8,49864031,49864080,49864079,49864080,50,+,TTACAGATCTAATTTAAATACTTTTACAAATTCATCAAATACATTCTCCG,"Intron (Gm45321-202/Gm45321-202, intron 1 of 3)",8,48646261,48843951,197691,2,Tenm3-207,-1020080,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,39,23965,ENSMUSG00000031561,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16061,cg24770312,0.00000906,0.00000588,1.541283889,0.124267837,gain,ns,-0.00000933,0.00000998,-0.934805833,0.350615963,neg,ns,-0.008891997,0.002924946,-3.040054727,0.002567009,neg,ns,2.590572564,0.000115512,0.000100589,1.148362966,0.251704103,pos,ns,0.712518963,Zfp407,Zfp407_Intron,18,84329506,84329555,84329506,84329507,50,+,CGACTTGAATAACTGCTGTGCGCAGGTTGTAATTATGTCAGCTGGAGTGT,"Intron (Zfp407-201/Zfp407, intron 2 of 2)",18,84128027,84558425,430399,2,Zfp407-201,228870,Zfp407-201;Zfp407-202;Zfp407-203,Zfp407;Zfp407;Zfp407,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,32,240476,ENSMUSG00000048410,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3279,cg11438375,-0.0000112,0.0000105,-1.065256495,0.28758886,loss,ns,0.0000167,0.0000179,0.934762512,0.350638257,pos,ns,0.014790392,0.005230127,2.827922167,0.004990069,pos,ns,2.301893492,-0.000480954,0.000179864,-2.67399315,0.00789273,neg,ns,0.795536926,Kcnma1,Kcnma1_Intron,14,23460343,23460392,23460343,23460344,50,+,CGGCTGTGCTTTAATTAACCTGAATTGAAGAGTGTTATCATTAAACTGCT,"Intron (Kcnma1-207/Kcnma1, intron 14 of 27)",14,23289431,23803304,513874,2,Kcnma1-207,342912,Kcnma1-207;Kcnma1-210;Kcnma1-205;Kcnma1-201;Kcnma1-208;Kcnma1-209;Kcnma1-212;Kcnma1-204;Kcnma1-202;Kcnma1-211;Kcnma1-229;Kcnma1-234;Kcnma1-223;Kcnma1-214;Kcnma1-216;Kcnma1-219;Kcnma1-220;Kcnma1-224;Kcnma1-233;Kcnma1-236;Kcnma1-237;Kcnma1-213;Kcnma1-228;Kcnma1-203;Kcnma1-206;Kcnma1-221;Kcnma1-225;Kcnma1-226;Kcnma1-230;Kcnma1-235;Kcnma1-217;Kcnma1-238,Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,41,16531,ENSMUSG00000063142,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8439,cg22267613,-0.0000261,0.0000103,-2.524100224,0.012098682,loss,ns,-0.0000164,0.0000176,-0.934610232,0.350716632,neg,ns,-0.005752871,0.00514406,-1.11835223,0.264282465,neg,ns,0.577931651,0.000000428,0.000176904,0.002421527,0.99806946,pos,ns,0.188111501,Zeb2,Zeb2_Intron,2,45114096,45114145,45114096,45114097,50,-,CGTGACGCTTCTGTCGTAATCCAATCAGGTTACATAGGTCCTAAACAAGA,"Intron (Zeb2-212/Zeb2, intron 1 of 10)",2,44983632,45117395,133764,2,Zeb2-212,3250,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219;Zeb2-211;Zeb2-210;Zeb2-205;Zeb2-223;Zeb2-217;Zeb2-225;Zeb2-204;Zeb2-206;Zeb2-230,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;-4020;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
20343,cg17939242,0.00000606,0.0000012,5.042098379,0.000000785,gain,yes,-0.00000191,0.00000204,-0.934511423,0.350767494,neg,ns,-0.000816481,0.000597758,-1.365906071,0.172958566,neg,ns,0.762057924,0.0000254,0.0000206,1.235434644,0.217604224,pos,ns,0.025687584,Hoxc5,Hoxc5_Exon,15,103009692,103009741,103009692,103009693,50,-,CGCCTATGATCCAGTGAGGCATTTCTCGACCTATGGAGCGGCCGTTGCCC,"Exon (Hoxc6-202/Hoxc6, exon 2 of 3)",15,102967443,103015676,48234,1,Hoxc5-202,42249,Hoxc5-202;Hoxc5-201;Hoxc6-202;Hoxc6-203;Hoxc6-201,Hoxc5;Hoxc5;Hoxc6;Hoxc6;Hoxc6,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,72,134,15424,ENSMUSG00000022485,mapped to different genes,15,103009647,103009812,166,*,166,14,0.602409639,0.948184415,0.084337349,5.77E-10,CpGisland,TRUE,U13,Hc-P
14774,cg21668347,0.00000298,0.00000292,1.020967076,0.308066126,gain,ns,0.00000464,0.00000496,0.934423487,0.350812762,pos,ns,-0.002584597,0.001453983,-1.777597925,0.076450209,neg,ns,1.116621321,0.000117274,0.00005,2.345360316,0.019638942,pos,ns,0.915063877,Gm11146,Gm11146_Exon,16,77599667,77599716,77599667,77599668,50,+,CGGGTTGAGGTAGTAGGTTGTATGGTTTAGAGTTACACCCTGGGAGTTAA,"Exon (Mirlet7c-1-201/Mirlet7c-1-201, exon 1 of 1)",16,77588578,77602094,13517,2,Gm11146-201,2378,Gm11146-201,Gm11146,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,21,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2094,cg02786186,0.0000695,0.0000141,4.909787664,0.00000148,gain,yes,0.0000225,0.000024,0.934419774,0.350814673,pos,ns,0.032371239,0.00704088,4.597612711,0.00000623,pos,ns,5.205412739,-0.001192438,0.000242135,-4.924675502,0.00000138,neg,yes,0.149022285,Skida1,Skida1_Exon,2,18046901,18046950,18046949,18046950,50,+,AAGAAGTTGGCCTGCGCCTGCACGCTGGGAGGCTTGCAGAAGCTGGTGCG,"Exon (Skida1-202/Skida1, exon 2 of 2)",2,18044083,18049051,4969,2,Skida1-202,2101,Skida1-205;Skida1-202;Skida1-201;Skida1-203;Skida1-204,Skida1;Skida1;Skida1;Skida1;Skida1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,31,72668,ENSMUSG00000054074,conserved gene and region,2,18046809,18047059,251,*,251,18,0.617529881,0.761375126,0.071713147,1.82E-11,CpGisland,TRUE,NA,NRS
12071,cg24460268,-0.0000474,0.00000669,-7.08097595,9.63E-12,loss,yes,-0.0000106,0.0000114,-0.934305253,0.350873633,neg,ns,0.016188621,0.003328392,4.863795928,0.00000183,pos,ns,5.736436727,-0.000607789,0.000114463,-5.309906744,0.00000021,neg,yes,0.85020784,Ints6,Ints6_Exon,14,62733748,62733797,62733748,62733749,50,-,CGATCCTGTATCCAGGAATCATGACCCTCCCTGAGGCACCAGTCATCATG,"Exon (Ints6-205/Ints6, exon 6 of 6)",14,62676330,62761112,84783,2,Ints6-201,27315,Ints6-201;Ints6-202;Ints6-206;Ints6-205,Ints6;Ints6;Ints6;Ints6,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,6,18130,ENSMUSG00000035161,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22481,cg02751864,-0.00000728,0.0000031,-2.34749289,0.019528886,loss,ns,0.00000492,0.00000527,0.934224496,0.350915213,pos,ns,0.000187193,0.001542859,0.121328565,0.903509401,pos,ns,0.044067324,-0.0000702,0.0000531,-1.32335663,0.18669198,neg,ns,0.911567949,Gm12830,Gm12830_Intergenic_upstream,4,114804214,114804263,114804214,114804215,50,-,CGGCTTGGAAGGATGTGATATCATTTATAACAGTACATTAAATGCAAGCT,Distal Intergenic,4,114821722,114856166,34445,1,Gm12830-201,-17508,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,12,26,433746,ENSMUSG00000055198,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9879,cg02934616,0.0000981,0.0000151,6.499181087,3.22E-10,gain,yes,-0.0000239,0.0000256,-0.934063237,0.350998252,neg,ns,0.004456136,0.007511331,0.593255185,0.553442957,pos,ns,0.256927135,0.0000214,0.000258314,0.083003766,0.933902115,pos,ns,0.522925424,Gm5040,Gm5040_Intergenic_downstream,10,51287935,51287984,51287983,51287984,50,+,CAGCAGGGTGCTTATCTGTTTTACTAGTTCAGAAGGACTTGATTGATGCG,Distal Intergenic,10,51238829,51239628,800,1,Gm5040-201,49106,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,11,268300,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7346,cg14967161,-0.0000166,0.00000377,-4.400588694,0.0000149,loss,ns,0.00000598,0.0000064,0.934019175,0.351020944,pos,ns,-0.003103118,0.001875817,-1.65427514,0.099083746,neg,ns,1.003997582,0.0000705,0.0000645,1.093594865,0.274981749,pos,ns,0.946895218,Tecta,Tecta_Exon,9,42377935,42377984,42377935,42377936,50,-,CGTAGTGCTGGCCATCAAAAGTCACTAAGAGCCCAAAATCTGTTTCCACG,"Exon (Tecta-201/Tecta, exon 8 of 24)",9,42329622,42399929,70308,2,Tecta-201,21945,Tecta-201;Tecta-203,Tecta;Tecta,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,21683,ENSMUSG00000037705,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26096,cg16655751,-0.0000477,0.00000771,-6.192305533,1.88E-09,loss,yes,-0.0000122,0.0000131,-0.933842158,0.351112115,neg,ns,-0.017512608,0.003835924,-4.565421534,0.0000072,neg,ns,5.142802647,0.000311166,0.000131917,2.358802281,0.018954244,pos,ns,0.832773755,Sox5,Sox5_Intron,6,143862900,143862949,143862948,143862949,50,-,TTAGAACAAAAAACATCTGGGCCATAAATCCTCTAATCTGCCAAAACACG,"Intron (Sox5-201/Sox5, intron 10 of 14)",6,143828425,144209480,381056,2,Sox5-201,346531,Sox5-201;Sox5-214;Sox5-205;Sox5-204;Sox5-202;Sox5-203;Sox5-209;Sox5-211;Sox5-206,Sox5;Sox5;Sox5;Sox5;Sox5;Sox5;Sox5;Sox5;Sox5,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,71,20678,ENSMUSG00000041540,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21774,cg07028334,0.0000128,0.00000499,2.574356284,0.010506624,gain,ns,-0.00000792,0.00000848,-0.933832579,0.351117049,neg,ns,-0.007398413,0.002484279,-2.978092914,0.003129347,neg,ns,2.50454621,0.000325055,0.0000854,3.804738506,0.00017101,pos,ns,0.904225567,Gm11668,Gm11668_Intergenic_downstream,11,109049054,109049103,109049102,109049103,50,+,CTGGTACTTTTCATCTTCAAAGTGTTCTCCAGACATTAGCCAATTAAACG,Distal Intergenic,11,109007651,109008781,1131,1,Gm11668-201,41403,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14583,cg03536049,-0.0000353,0.0000106,-3.325246928,0.000989465,loss,ns,-0.0000168,0.000018,-0.933802086,0.351132756,neg,ns,-0.012533561,0.005286273,-2.370963728,0.018352938,neg,ns,1.736294413,0.0000125,0.000181794,0.068857874,0.945147144,pos,ns,0.719933102,Agbl1,Agbl1_Intron,7,76661167,76661216,76661215,76661216,50,+,CGTATAGGTCTCTAATTGCAGCCAGGATTCTGCAGCTGGGAAGTCACCCG,"Intron (Agbl1-203/Agbl1, intron 18 of 22)",7,76229887,77124698,894812,1,Agbl1-203,431280,Agbl1-203;Agbl1-201;Agbl1-202,Agbl1;Agbl1;Agbl1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,244071,ENSMUSG00000025754,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15752,cg06729321,-0.0000034,0.00000373,-0.912625312,0.362148822,loss,ns,-0.00000591,0.00000633,-0.933795705,0.351136043,neg,ns,-0.001117878,0.001854778,-0.602701946,0.54714762,neg,ns,0.261895485,-0.0000668,0.0000638,-1.047672778,0.295605534,neg,ns,0.915492793,Rgs6,Rgs6_threeUTR,12,83137383,83137432,83137431,83137432,50,-,AAGCCAGAAAGTGAGCAAGGTCGTAGAACTTCCCTAGAAAAGTTCACTCG,3' UTR,12,82616636,83157971,541336,1,Rgs6-209,520747,Rgs6-209;Rgs6-203;Rgs6-216;Rgs6-222;Rgs6-208;Rgs6-205;Rgs6-206;Rgs6-201;Rgs6-212;Rgs6-213;Rgs6-211;Rgs6-204;Rgs6-207;Rgs6-220;Rgs6-218,Rgs6;Rgs6;Rgs6;Rgs6;Rgs6;Rgs6;Rgs6;Rgs6;Rgs6;Rgs6;Rgs6;Rgs6;Rgs6;Rgs6;Rgs6,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,5,50779,ENSMUSG00000021219,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10491,cg14375999,-0.0000275,0.00000708,-3.883888291,0.000125684,loss,ns,-0.0000112,0.000012,-0.933714206,0.351178025,neg,ns,-0.008048843,0.003522169,-2.285195154,0.022976436,neg,ns,1.638717339,-0.0000326,0.000121127,-0.269215349,0.787943064,neg,ns,0.844804967,Npas3,Npas3_Intron,12,53846688,53846737,53846688,53846689,50,-,CGCCTTGAGCTTGCCTTCTGACTAGCTTGTTGAATGATGTGCTAATCCAT,"Intron (Npas3-204/Npas3, intron 4 of 10)",12,53248157,54069532,821376,1,Npas3-204,598531,Npas3-204;Npas3-201;Npas3-203,Npas3;Npas3;Npas3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,83,103,27386,ENSMUSG00000021010,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27269,cg18255911,-0.00000189,0.00000149,-1.265824366,0.206526443,loss,ns,0.00000236,0.00000253,0.933652349,0.351209892,pos,ns,-0.001323309,0.000741329,-1.785049053,0.075231017,neg,ns,1.123603069,0.0000237,0.0000255,0.927939773,0.354160733,pos,ns,0.949441309,Prrc2c,Prrc2c_Exon,1,162675680,162675729,162675728,162675729,50,+,CCTGGCTACATGTGGCAAACGAGCATGGCTCATGAGGCCTGTGGTCAGCG,"Exon (Prrc2c-210/Prrc2c, exon 34 of 35)",1,162670725,162740525,69801,2,Prrc2c-202,64796,Prrc2c-202;Prrc2c-210;Prrc2c-212;Prrc2c-206;Prrc2c-209;Prrc2c-201,Prrc2c;Prrc2c;Prrc2c;Prrc2c;Prrc2c;Prrc2c,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,7,226562,ENSMUSG00000040225,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4223,cg12368841,-0.00000529,0.00000247,-2.142803356,0.032907268,loss,ns,0.00000392,0.00000419,0.933631693,0.351220533,pos,ns,-0.00118295,0.001228732,-0.962741096,0.336427831,neg,ns,0.473108084,0.0000244,0.0000423,0.577625714,0.563936139,pos,ns,0.941441058,Pacsin1,Pacsin1_Exon,17,27704971,27705020,27705019,27705020,50,+,GGCAGAAGGACGCCTATCACAAGCAGATCATGGGTGGCTTCAAGGAGACG,"Exon (Pacsin1-204/Pacsin1, exon 4 of 10)",17,27655509,27708659,53151,1,Pacsin1-204,49462,Pacsin1-204;Pacsin1-201;Pacsin1-211;Pacsin1-208;Pacsin1-202;Pacsin1-206;Pacsin1-207;Pacsin1-203;Pacsin1-210;Pacsin1-209,Pacsin1;Pacsin1;Pacsin1;Pacsin1;Pacsin1;Pacsin1;Pacsin1;Pacsin1;Pacsin1;Pacsin1,0;0;0;0;0;0;0;-629;-1460;-1514,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,23969,ENSMUSG00000040276,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11956,cg20741922,0.00005,0.00000487,10.2684198,1.75E-21,gain,yes,-0.00000772,0.00000827,-0.933533174,0.351271291,neg,ns,0.009048997,0.002422236,3.735803324,0.000222686,pos,ns,3.65230698,-0.000121979,0.0000833,-1.464330144,0.144117096,neg,ns,0.1201477,Tbr1,Tbr1_Exon,2,61804346,61804395,61804394,61804395,50,-,CCCCCCAAGCCAACAATAAAATCATCCCCTTCAATTTGCCATGATCGTCG,"Exon (Tbr1-204/Tbr1, exon 2 of 2)",2,61802930,61804558,1629,1,Tbr1-204,1416,Psmd14-201;Psmd14-208;Psmd14-202;Tbr1-204;Tbr1-201;Tbr1-202;Tbr1-203,Psmd14;Psmd14;Psmd14;Tbr1;Tbr1;Tbr1;Tbr1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,24,27,21375,ENSMUSG00000035033,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21673,cg01861176,-0.00000852,0.00000304,-2.804578844,0.005356289,loss,ns,-0.00000482,0.00000516,-0.933417171,0.351331063,neg,ns,-0.0000557,0.001511308,-0.036854188,0.970624988,neg,ns,0.012948532,-0.0000427,0.000052,-0.821688575,0.411885661,neg,ns,0.8881279,Yy1,Yy1_Intron,12,108814116,108814165,108814116,108814117,50,+,CGATGGAGAATGACAGTCCATTGTTGCAGCACAGAATATGGGGCCACCAA,"Intron (Yy1-201/Yy1, intron 3 of 4)",12,108792973,108820148,27176,1,Yy1-201,21143,Yy1-201;Yy1-202,Yy1;Yy1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,3,22632,ENSMUSG00000021264,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7316,cg08969321,-0.00000426,0.00000111,-3.852874719,0.000141889,loss,ns,0.00000176,0.00000188,0.933379332,0.351350562,pos,ns,0.0000376,0.000550894,0.068332692,0.945564854,pos,ns,0.024308678,0.0000161,0.0000189,0.847745808,0.397233598,pos,ns,0.037575186,Rbm27,Rbm27_fiveUTR,18,42275519,42275568,42275519,42275520,50,-,CGCCTTCCCTGCACCATGCTCATAGAGGATGTGGATGCCCTCAAGTCCTG,Promoter (<=1kb),18,42275353,42341542,66190,1,Rbm27-201,166,Rbm27-201;Rbm27-202;Rbm27-203,Rbm27;Rbm27;Rbm27,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,10,225432,ENSMUSG00000024491,conserved gene and region,18,42275393,42275520,128,*,128,15,0.6953125,1.052631579,0.1171875,7.74E-13,CpGisland,TRUE,U1,Pr-A
4520,cg07082738,0.000000809,0.00000321,0.252009321,0.801200854,gain,ns,-0.00000509,0.00000545,-0.933294019,0.351394526,neg,ns,-0.002502785,0.00159775,-1.566443796,0.118264937,neg,ns,0.927143996,0.0000462,0.0000549,0.841178398,0.400896383,pos,ns,0.928842296,Ccdc136,Ccdc136_Exon,6,29419123,29419172,29419171,29419172,50,-,CTGCGGGAGCTGCAGCTGCAATACCAGGCTAGCATGGATGAGCAGGGGCG,"Exon (Ccdc136-201/Ccdc136, exon 16 of 18)",6,29396630,29426953,30324,1,Ccdc136-202,22493,Ccdc136-202;Ccdc136-206;Ccdc136-201;Ccdc136-209;Ccdc136-208;Ccdc136-207;Ccdc136-210;Ccdc136-203;Ccdc136-205,Ccdc136;Ccdc136;Ccdc136;Ccdc136;Ccdc136;Ccdc136;Ccdc136;Ccdc136;Ccdc136,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,232664,ENSMUSG00000029769,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4077,cg03228030,0.0000153,0.00000591,2.585889847,0.010168794,gain,ns,-0.00000937,0.00001,-0.933254116,0.351415091,neg,ns,-0.001646519,0.0029399,-0.560059535,0.575843309,neg,ns,0.239695675,0.0000642,0.000101103,0.635329105,0.525682474,pos,ns,0.885486796,Gm12071,Gm12071_Intergenic_downstream,11,26725450,26725499,26725498,26725499,50,+,TCTGAAACCTGCTGTCGACATTACAGTCCCTGCTGCTTTTAGCTGTATCG,Distal Intergenic,11,26712905,26713373,469,1,Gm12071-201,12545,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,5,606714,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1818,cg08152313,-0.00000199,0.00000483,-0.410917516,0.681416918,loss,ns,0.00000766,0.00000821,0.933207562,0.351439084,pos,ns,0.002507973,0.002404496,1.043034856,0.297744853,pos,ns,0.526155737,-0.00016447,0.0000827,-1.988981505,0.047581985,neg,ns,0.91385005,Foxp2,Foxp2_Intron,6,15407361,15407410,15407361,15407362,50,-,CGGCCCACACATTTGATAAATATTAATAGCATGAATTTATTACCAAGGAG,"Intron (Foxp2-207/Foxp2, intron 12 of 18)",6,14901349,15441977,540629,1,Foxp2-207,506012,Foxp2-207;Foxp2-213;Foxp2-205;Foxp2-204;Foxp2-201;Foxp2-209;Foxp2-202;Foxp2-206,Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,38,65,114142,ENSMUSG00000029563,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9946,cg02132378,-0.0000263,0.00000959,-2.743172189,0.00643898,loss,ns,-0.0000152,0.0000163,-0.933194207,0.351445967,neg,ns,0.013856944,0.004772308,2.903615001,0.003953621,pos,ns,2.403004912,-0.000742439,0.000164119,-4.523776049,0.00000866,neg,ns,0.741489619,Satb1,Satb1_Intergenic_downstream,17,51702531,51702580,51702531,51702532,50,+,CGTATTTCATGTCATTATGTTGGATAATATAACAAATGATGCAATCAGAG,Distal Intergenic,17,51739988,51742266,2279,2,Satb1-205,39686,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,36,20230,ENSMUSG00000023927,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16945,cg20823439,-0.0000429,0.00000914,-4.700115611,0.00000392,loss,ns,-0.0000145,0.0000155,-0.932971533,0.351560744,neg,ns,-0.002113818,0.004547852,-0.464794809,0.642404696,neg,ns,0.192191293,-0.000151174,0.0001564,-0.966583723,0.334505632,neg,ns,0.771220176,Pah,Pah_Exon,10,87570255,87570304,87570255,87570256,50,-,CGGGATTTCTTGGGTGGCCTGGCCTTCCGAGTCTTCCACTGCACACAGTA,"Exon (Pah-201/Pah, exon 7 of 13)",10,87521795,87584136,62342,1,Pah-201,48460,Pah-201;Pah-204;Pah-203;Pah-202,Pah;Pah;Pah;Pah,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,18478,ENSMUSG00000020051,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26019,cg15564431,0.00007,0.0000144,4.875304396,0.00000174,gain,yes,-0.0000228,0.0000244,-0.93294373,0.351575077,neg,ns,-0.001242119,0.007147717,-0.173778482,0.862152978,neg,ns,0.064415667,0.0000645,0.000245809,0.262416315,0.793174794,pos,ns,0.732813708,Gm2574,Gm2574_Intergenic_downstream,3,143101516,143101565,143101516,143101517,50,-,CGCAGAGCACATTCAATTTAATGAGCAGAAATTGAATTCAAGTTTGTTCG,Distal Intergenic,3,142962611,142963612,1002,1,Gm2574-201,138954,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,19,100040053,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
17212,cg22997536,0.0000337,0.0000131,2.570826408,0.010612004,gain,ns,0.0000208,0.0000223,0.932843382,0.351626811,pos,ns,0.002980558,0.006532505,0.45626579,0.648518347,pos,ns,0.188077733,-0.000123755,0.000224652,-0.550873969,0.582116849,neg,ns,0.434761194,Nog,Nog_Intergenic_downstream,11,89209555,89209604,89209603,89209604,50,-,ATCAGGGAGACAATATGTCTGTGCGACTTGTTCTAATTAGGGGCACAGCG,Distal Intergenic,11,89300638,89302332,1695,2,Nog-201,92777,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,36,18121,ENSMUSG00000048616,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15956,cg00643363,0.0000527,0.0000169,3.124596942,0.001948882,gain,ns,-0.0000267,0.0000287,-0.932740948,0.351679625,neg,ns,0.050831772,0.00839923,6.051956393,4.12E-09,pos,ns,8.384580892,-0.002272393,0.000288849,-7.867066821,6.10E-14,neg,yes,0.828194579,Prkaca,Prkaca_Exon,8,83995300,83995349,83995348,83995349,50,+,TCCCTTCATACCAAAGTTTAAAGGCCCTGGGGATACGAGTAACTTTGACG,"Exon (Prkaca-201/Prkaca, exon 10 of 10)",8,83972993,83996443,23451,1,Prkaca-201,22307,Prkaca-201;Prkaca-202;Samd1-201;Samd1-202,Prkaca;Prkaca;Samd1;Samd1,0;0;-2152;-3075,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,18747,ENSMUSG00000005469,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10859,cg06056217,0.00000354,0.00000214,1.65306537,0.099329881,gain,ns,-0.0000034,0.00000364,-0.93247484,0.351816852,neg,ns,0.001882483,0.001067121,1.764075913,0.078704083,pos,ns,1.104002737,-0.0000772,0.0000367,-2.10451397,0.036138444,neg,ns,0.061149227,Klf4,Klf4_Intergenic_upstream,4,55651613,55651662,55651661,55651662,50,+,CGGGGTGATGTCAGACAGCCTTCCAGGATTAGAAACCCTTAAAAGCTCCG,Distal Intergenic,4,55527143,55532466,5324,2,Klf4-201,-119147,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,3,16600,ENSMUSG00000003032,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
9415,cg17513136,-0.0000147,0.00000321,-4.584827994,0.0000066,loss,ns,0.00000508,0.00000545,0.932331298,0.351890887,pos,ns,-0.002490008,0.001595632,-1.560515785,0.119658306,neg,ns,0.922057148,-0.0000466,0.0000549,-0.84853304,0.396795907,neg,ns,0.957114771,Zbtb16,Zbtb16_Intron,9,48678423,48678472,48678423,48678424,50,-,CGTCCCCTTTAAAAGGAAATATAATTTACAGTGTGCAGCCAGGCGGCCCA,"Intron (Zbtb16-201/Zbtb16, intron 4 of 6)",9,48654297,48835945,181649,2,Zbtb16-201,157473,Zbtb16-201;Zbtb16-202,Zbtb16;Zbtb16,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,37,235320,ENSMUSG00000066687,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13719,cg02317742,-0.00000118,0.00000133,-0.886001102,0.376303701,loss,ns,0.00000211,0.00000227,0.932308925,0.351902428,pos,ns,0.0016445,0.000663708,2.477748334,0.013753934,pos,ns,1.861573069,-0.0000427,0.0000228,-1.869298603,0.062523965,neg,ns,0.046009949,Atoh8,Atoh8_fiveUTR,6,72235458,72235507,72235506,72235507,50,-,GCGCTCCATCTGTGTTTGTTTAGCCTCAGTTTACACAGAAGCCCAGTTCG,Promoter (<=1kb),6,72206177,72235577,29401,2,Atoh8-201,70,Atoh8-202;Atoh8-201;Atoh8-203,Atoh8;Atoh8;Atoh8,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,7,71093,ENSMUSG00000037621,conserved gene but different region,6,72235506,72235599,94,*,94,15,0.79787234,1.03372434,0.159574468,4.29E-15,CpGisland,TRUE,U3,Pr-B
21563,cg22605235,-0.0000299,0.00000972,-3.072532099,0.002310869,loss,ns,0.0000154,0.0000165,0.932215922,0.351950403,pos,ns,-0.002340987,0.004840035,-0.483671566,0.628960443,neg,ns,0.201376668,-0.000200036,0.000166448,-1.201792387,0.23036125,neg,ns,0.691047675,Zfhx3,Zfhx3_Intron,8,108315294,108315343,108315342,108315343,50,-,ATTGTCTCCTCGTATTTGCTTTTTAATTTTGTATAATCTGGTCCATTTCG,"Intron (Zfhx3-204/Zfhx3, intron 2 of 15)",8,107942644,108961630,1018987,1,Zfhx3-204,372650,Zfhx3-204;Zfhx3-207,Zfhx3;Zfhx3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,114,177,11906,ENSMUSG00000038872,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17121,cg18838779,0.00000218,0.00000415,0.524841827,0.600068277,gain,ns,0.00000658,0.00000705,0.932188558,0.35196452,pos,ns,0.004845731,0.002066393,2.345018726,0.019656621,pos,ns,1.706491142,-0.000131356,0.0000711,-1.848448208,0.065489714,neg,ns,0.920019833,Msi2,Msi2_Intron,11,88508748,88508797,88508796,88508797,50,+,AGCTTCAATAACTATGAGGATATATAACTGTATTCTAATTGTGCTCTGCG,"Intron (Msi2-203/Msi2, intron 6 of 13)",11,88339382,88718229,378848,2,Msi2-203,209432,Msi2-203;Msi2-201;Msi2-207;Msi2-205,Msi2;Msi2;Msi2;Msi2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,21,36,76626,ENSMUSG00000069769,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
194,cg23901148,-0.0000242,0.00000935,-2.592564135,0.009977767,loss,ns,0.0000148,0.0000159,0.93203979,0.352041272,pos,ns,0.0037607,0.00465432,0.808002018,0.419709008,pos,ns,0.37705171,-0.000176377,0.000160062,-1.101930199,0.271346806,neg,ns,0.697666301,Fzd1,Fzd1_Intergenic_downstream,5,4666188,4666237,4666236,4666237,50,-,GTGTATTATACTGATATTCCCCAGATAACACATCTTGAATTACAAACTCG,Distal Intergenic,5,4753839,4758035,4197,2,Fzd1-201,91847,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,5,14362,ENSMUSG00000044674,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27489,cg24489237,-0.00000151,0.00000205,-0.739697775,0.460043176,loss,ns,0.00000324,0.00000347,0.931916284,0.352104999,pos,ns,0.001850009,0.001017936,1.817411362,0.070119465,pos,ns,1.154161408,-0.0000203,0.000035,-0.581297471,0.561462393,neg,ns,0.066800489,Pbx1,Pbx1_Exon,1,168431345,168431394,168431393,168431394,50,+,TGATGGTCATAATTTGCTGTAAAATGTCTCCAATGTCCTGCTTCCTCCCG,Promoter (<=1kb),1,168119364,168432270,312907,2,Pbx1-208,876,Pbx1-208;Pbx1-205;Pbx1-206;Pbx1-201;Pbx1-202;Pbx1-204;Pbx1-207,Pbx1;Pbx1;Pbx1;Pbx1;Pbx1;Pbx1;Pbx1,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,84,18514,ENSMUSG00000052534,conserved gene and region,1,168431375,168431571,197,*,197,17,0.700507614,0.733625411,0.086294416,3.50E-12,CpGisland,TRUE,U1,Pr-A
20626,cg07657664,-0.00000214,0.00000898,-0.238342861,0.811772651,loss,ns,0.0000142,0.0000153,0.931899793,0.352113508,pos,ns,0.001102123,0.004469265,0.246600582,0.805380569,pos,ns,0.093998852,-0.000148822,0.000153698,-0.968274613,0.333662055,neg,ns,0.596283317,Olfr641,Olfr641_Exon,7,104040416,104040465,104040464,104040465,50,+,TTTGGCATGGACCTGTTTTTTATCTTCCTCTCCTATGTGCTCATTCTGCG,"Exon (Olfr641-202/Olfr641, exon 2 of 2)",7,104035445,104042072,6628,1,Olfr641-202,4971,Olfr641-202;Olfr641-203;Olfr641-201;Olfr643-201,Olfr641;Olfr641;Olfr641;Olfr643,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,259075,ENSMUSG00000073932,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2623,cg07992909,-0.00000113,0.00000432,-0.260463538,0.794679161,loss,ns,0.00000684,0.00000734,0.931790474,0.352169922,pos,ns,0.000623758,0.002150005,0.290119275,0.771918957,pos,ns,0.112428293,0.0000293,0.0000739,0.396629899,0.691913296,pos,ns,0.977323352,Zswim8,Zswim8_Exon,14,20723211,20723260,20723211,20723212,50,-,CGCAGCGCCTTCTGCCTGACGCCCATGGGCATGATGCAGTTCAACGACAT,"Exon (Zswim8-201/Zswim8, exon 26 of 26)",14,20707552,20723619,16068,1,Zswim8-201,15659,Ndst2-202;Ndst2-205;Ndst2-201;Ndst2-204;Ndst2-207;Ndst2-203;Ndst2-206;Zswim8-201;Zswim8-208;Zswim8-204;Zswim8-203;Zswim8-209;Zswim8-207;Zswim8-202;Zswim8-210;Zswim8-214,Ndst2;Ndst2;Ndst2;Ndst2;Ndst2;Ndst2;Ndst2;Zswim8;Zswim8;Zswim8;Zswim8;Zswim8;Zswim8;Zswim8;Zswim8;Zswim8,0;0;0;0;0;0;5428;0;0;0;0;0;4610;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,13,14,268721,ENSMUSG00000021819,mapped to different genes,14,20723151,20723308,158,*,158,11,0.550632911,0.946623094,0.069620253,0.000000471,CpGisland,TRUE,U10,Tr-S
14951,cg10544031,0.0000108,0.00000259,4.157565953,0.0000417,gain,ns,0.0000041,0.0000044,0.931761036,0.352185114,pos,ns,0.006067461,0.001290397,4.702011961,0.00000388,pos,ns,5.410863629,-0.000110659,0.0000444,-2.493636198,0.013165215,neg,ns,0.070937465,Pax3,Pax3_Promoter,1,78197933,78197982,78197933,78197934,50,-,CGGGTTCAGCGTTTGTTCTCAGGAATTTATTATGGCATTCAGACTAAACT,Promoter (<=1kb),1,78101270,78197134,95865,2,Pax3-202,-848,Pax3-201;Pax3-202;Pax3-203,Pax3;Pax3;Pax3,0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,17,18505,ENSMUSG00000004872,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
17585,cg16157343,-0.00000157,0.00000341,-0.461819923,0.644534376,loss,ns,-0.00000539,0.00000579,-0.93149178,0.352324092,neg,ns,0.001262044,0.001695841,0.744199701,0.457319398,pos,ns,0.339780377,-0.0000486,0.0000583,-0.832481884,0.40577786,neg,ns,0.888588962,Madd,Madd_Intron,2,91139947,91139996,91139947,91139948,50,-,CGATGAGGGGCACAAAAGAATGAAGCACAAACACAGCAGGAACTCAAAGC,"Intron (Madd-211/Madd, intron 30 of 31)",2,91137360,91179315,41956,2,Madd-211,39319,Madd-211;Madd-212;Madd-206;Madd-207;Madd-208;Madd-213;Madd-205;Madd-203;Madd-204;Madd-209;Madd-210;Madd-214;Madd-202;Madd-215;Madd-216;Madd-224;Madd-226;Madd-227;Madd-228;Madd-218;Madd-221;Mybpc3-201;Mybpc3-202;Mybpc3-203,Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Mybpc3;Mybpc3;Mybpc3,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;14955;12495;21803;21803;21803,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,7,228355,ENSMUSG00000040687,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6859,cg24024857,0.00000842,0.00000368,2.288171956,0.022800347,gain,ns,0.00000582,0.00000625,0.931368236,0.352387871,pos,ns,0.006125109,0.00183081,3.345573049,0.000922067,pos,ns,3.035237356,-0.0000974,0.000063,-1.54777173,0.122697509,neg,ns,0.061999249,Nr6a1,Nr6a1_Intron,2,38925332,38925381,38925380,38925381,50,-,GCGCTAATTGCTCCAGGGCGCTTTCCAAGTTCAAAAGTTCACCTTTTACG,"Intron (Nr6a1-202/Nr6a1, intron 2 of 11)",2,38723370,38927688,204319,2,Nr6a1-202,2307,Nr6a1-202;Nr6a1-201;Nr6a1-208,Nr6a1;Nr6a1;Nr6a1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,12,14536,ENSMUSG00000063972,conserved gene and region,2,38925258,38925381,124,*,124,11,0.596774194,0.999267399,0.088709677,3.88E-08,CpGisland,TRUE,U3,Pr-B
9950,cg05713651,-0.0000975,0.0000149,-6.546751332,2.44E-10,loss,yes,-0.0000236,0.0000253,-0.93128754,0.352429534,neg,ns,0.052242498,0.007412226,7.048152665,1.18E-11,pos,yes,10.9278017,-0.000406982,0.000254906,-1.596596131,0.111374608,neg,ns,0.801639799,Skap2,Skap2_Intron,6,51709235,51709284,51709235,51709236,50,+,CGAAGTCCCAGTTTCCACAGCAAATTATTCTAAACAGGGCTTATTATCAA,"Intron (Gm38811-201/Gm38811-201, intron 1 of 1)",6,51859104,51871929,12826,2,Skap2-207,162645,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,19,54353,ENSMUSG00000059182,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16465,cg06121124,-0.000000845,0.00000081,-1.04331666,0.297614571,loss,ns,0.00000128,0.00000138,0.931168846,0.352490821,pos,ns,-0.000474092,0.000403129,-1.176028989,0.240485627,neg,ns,0.618910875,0.0000108,0.0000139,0.778778276,0.436704388,pos,ns,0.980187897,Ylpm1,Ylpm1_Exon,12,85060237,85060286,85060237,85060238,50,+,CGAGCTTCTCTCTGTGTACGATTTAGGGTTACATTCCGAAAAGCAAATGG,"Exon (Ylpm1-207/Ylpm1, exon 17 of 20)",12,84996321,85070492,74172,1,Ylpm1-207,63916,Ylpm1-207;Ylpm1-201;Ylpm1-202;Ylpm1-203;Ylpm1-208;Ylpm1-206;Ylpm1-205,Ylpm1;Ylpm1;Ylpm1;Ylpm1;Ylpm1;Ylpm1;Ylpm1,0;0;0;0;18010;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,13,56531,ENSMUSG00000021244,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20244,cg07675629,0.0000967,0.00000892,10.84428025,1.92E-23,gain,yes,0.0000141,0.0000152,0.931143143,0.352504093,pos,ns,0.01224231,0.004439526,2.757571222,0.006168701,pos,ns,2.209806289,-0.0000221,0.000152675,-0.14506596,0.884753066,neg,ns,0.202142851,Hoxc10,Hoxc10_fiveUTR,15,102966835,102966884,102966883,102966884,50,-,CTTAAAAACCCCTCTCTCTGAAAATGACATGCCCTCGCAATGTAACTCCG,Promoter (<=1kb),15,102966796,102971893,5098,1,Hoxc10-201,39,Hoxc10-201;Hoxc5-202,Hoxc10;Hoxc5,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,21,209448,ENSMUSG00000022484,mapped to different genes,15,102966870,102967117,248,*,248,20,0.625,0.826666667,0.080645161,1.13E-13,CpGisland,TRUE,U13,Hc-P
2075,cg08421954,0.000000339,0.00000101,0.336756605,0.736528249,gain,ns,-0.00000159,0.00000171,-0.931127237,0.352512307,neg,ns,-0.0000343,0.000501257,-0.068404627,0.945507639,neg,ns,0.024334958,-0.0000227,0.0000172,-1.314289479,0.189720423,neg,ns,0.975040636,Heca,Heca_threeUTR,10,17902176,17902225,17902224,17902225,50,+,TATCAATAAAATAGCTATTACTAAAGCAAAGCTTTCATCAATAAGCTTCG,3' UTR,10,17868612,17915222,46611,2,Heca-202,12997,Heca-202;Heca-201;Heca-204;Heca-203,Heca;Heca;Heca;Heca,0;0;0;6076,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,1,380629,ENSMUSG00000039879,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27178,cg22789469,0.000000234,0.00000234,0.100391759,0.920098206,gain,ns,-0.00000369,0.00000397,-0.931115698,0.352518266,neg,ns,-0.000324831,0.001162343,-0.279461963,0.780076685,neg,ns,0.107862702,-0.0000413,0.00004,-1.032278033,0.302746547,neg,ns,0.941888244,Rabgap1l,Rabgap1l_Exon,1,160351221,160351270,160351221,160351222,50,+,CGCCAGAAGCCGAGGCACAAACAGACGATGCCCCATCCCCAGAAGTTCCA,Promoter (<=1kb),1,160219174,160351571,132398,2,Rabgap1l-202,301,Rabgap1l-202;Rabgap1l-217;Rabgap1l-203;Rabgap1l-201,Rabgap1l;Rabgap1l;Rabgap1l;Rabgap1l,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,5,29809,ENSMUSG00000026721,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3044,cg25349135,0.000041,0.000012,3.416541359,0.000718818,gain,ns,-0.000019,0.0000204,-0.931048614,0.352552909,neg,ns,-0.010988483,0.005966236,-1.841778189,0.066462711,neg,ns,1.177421947,0.000433677,0.000205178,2.113658772,0.035342989,pos,ns,0.255624232,Pou3f2,Pou3f2_Intergenic_downstream,4,22478790,22478839,22478838,22478839,50,+,GGGCAAATAAAGTAATTTGAACATGCACCAACAGTTTTCCATAAAATACG,Distal Intergenic,4,22482780,22488366,5587,2,Pou3f2-201,9527,Pou3f2-201,Pou3f2,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,18,18992,ENSMUSG00000095139,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
22441,cg18977692,0.000103431,0.00000795,13.0084084,3.61E-31,gain,yes,-0.0000126,0.0000135,-0.930958319,0.352599542,neg,ns,0.002672692,0.003957334,0.675376947,0.49993976,pos,ns,0.301082322,0.000229258,0.000136092,1.684575808,0.093076894,pos,ns,0.182995485,Trim71,Trim71_fiveUTR,9,114564329,114564378,114564377,114564378,50,-,GATCGGAATTCGGAATCCTTTTAATCTCCAAAGGAGCAAACTCACTTCCG,Promoter (<=1kb),9,114507133,114564369,57237,2,Trim71-201,0,Trim71-201,Trim71,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,1,636931,ENSMUSG00000079259,conserved gene but different region,9,114564240,114564413,174,*,174,15,0.614942529,0.915789474,0.086206897,8.65E-11,CpGisland,TRUE,U3,Pr-B
26223,cg22219469,-0.0000196,0.00000454,-4.309504045,0.000022,loss,ns,-0.00000718,0.00000772,-0.930953287,0.352602141,neg,ns,-0.003375179,0.002260851,-1.492880331,0.136485538,neg,ns,0.864913364,0.0000452,0.0000778,0.581704951,0.56118819,pos,ns,0.931994962,Sox5,Sox5_Intron,6,144596796,144596845,144596844,144596845,50,+,CATTCCCATATTTACATATTTTTAATAGGGCTATGATGAATCTCCTTCCG,"Intron (Sox5-209/Sox5, intron 2 of 13)",6,143843739,144781977,938239,2,Sox5-209,185132,Sox5-209;Sox5-212,Sox5;Sox5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,71,20678,ENSMUSG00000041540,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27604,cg09994595,0.0000746,0.0000152,4.91863616,0.00000142,gain,yes,-0.000024,0.0000258,-0.93083155,0.352665019,neg,ns,0.027864408,0.007552919,3.689223885,0.000265594,pos,ns,3.575781525,-0.000753537,0.000259744,-2.901071814,0.003984983,neg,ns,0.336341699,Nit1,Nit1_Exon,1,171344078,171344127,171344126,171344127,50,-,AGCACGTGACAATTGTAGATTTTCTGAGTCTGCTCCCAGTCTTGGCCACG,"Exon (Nit1-203/Nit1, exon 4 of 7)",1,171338008,171345482,7475,2,Nit1-206,1355,Dedd-204;Dedd-203;Dedd-201;Dedd-209;Dedd-206;Dedd-202;Dedd-207;Dedd-205;Nit1-206;Nit1-203;Nit1-201;Nit1-205;Nit1-202;Nit1-208;Nit1-204;Nit1-207;Pfdn2-202;Pfdn2-201,Dedd;Dedd;Dedd;Dedd;Dedd;Dedd;Dedd;Dedd;Nit1;Nit1;Nit1;Nit1;Nit1;Nit1;Nit1;Nit1;Pfdn2;Pfdn2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;1518;-1543;-1603,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,27045,ENSMUSG00000013997,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
20224,cg05604535,-0.00000626,0.00000821,-0.76209932,0.446580162,loss,ns,-0.000013,0.000014,-0.930815875,0.352673115,neg,ns,-0.008601838,0.004088372,-2.103976236,0.036185692,neg,ns,1.441463116,0.000193456,0.000140599,1.375940711,0.169833209,pos,ns,0.148833134,Hoxc11,Hoxc11_Promoter,15,102955341,102955390,102955389,102955390,50,-,TAAGCATTCAAAGGATTTTATTATAACCTACAAAGCCCTCTCTCCCAACG,Promoter (<=1kb),15,102954427,102957708,3282,1,Hoxc11-201,914,Hoxc11-201,Hoxc11,0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,12,24,109663,ENSMUSG00000001656,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
25220,cg20669861,-0.00000602,0.00000177,-3.401265547,0.000758666,loss,ns,0.0000028,0.00000301,0.930611414,0.352778738,pos,ns,0.0000534,0.000881508,0.060625085,0.951696861,pos,ns,0.021501363,-0.0000154,0.0000303,-0.509114303,0.611034286,neg,ns,0.046052031,Arid1a,Arid1a_Promoter,4,133757440,133757489,133757488,133757489,50,-,GGCAACTATGTCAGTTGACGGAAGCCAGAAGCAGAGTTCAAAGCCTGGCG,Promoter (<=1kb),4,133679941,133756769,76829,2,Arid1a-201,-720,Arid1a-202;Arid1a-205;Arid1a-201;Arid1a-203,Arid1a;Arid1a;Arid1a;Arid1a,0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,4,31,93760,ENSMUSG00000007880,mapped to different genes,4,133757142,133757554,413,*,413,27,0.595641647,0.7375,0.065375303,6.90E-16,CpGisland,TRUE,U1,Pr-A
7903,cg24514324,-0.00000793,0.00000409,-1.936426508,0.053724149,loss,ns,0.00000647,0.00000695,0.930307252,0.352935903,pos,ns,0.009563206,0.002037246,4.694182379,0.00000402,pos,ns,5.39532868,-0.000197257,0.0000701,-2.815520316,0.005181701,neg,ns,0.890360661,Ebf1,Ebf1_Intron,11,44626291,44626340,44626339,44626340,50,+,ATTTACGCTAGAGCTGTTTCCATGTGAATGTTTGAACAGCATTAAAAACG,"Intron (Ebf1-203/Ebf1, intron 4 of 15)",11,44617317,45004995,387679,1,Ebf1-203,8974,Ebf1-203;Ebf1-202;Ebf1-201;Ebf1-207;Ebf1-204;Ebf1-205,Ebf1;Ebf1;Ebf1;Ebf1;Ebf1;Ebf1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,80,13591,ENSMUSG00000057098,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6848,cg07323919,-0.00000821,0.00000878,-0.93506702,0.350481566,loss,ns,-0.0000139,0.0000149,-0.930141134,0.353021757,neg,ns,-0.016731215,0.004368993,-3.829535602,0.000155368,neg,ns,3.808639424,0.000476641,0.000150249,3.172334427,0.001663703,pos,ns,0.184846491,Etv1,Etv1_fiveUTR,12,38780503,38780552,38780551,38780552,50,-,TGTCTCCGTCTCTTTAGTCCCGTTAGGTGCAAAGCAAGTCTCGTTGATCG,5' UTR,12,38779380,38866249,86870,1,Etv1-203,1123,Etv1-203;Etv1-201;Etv1-211;Etv1-207;Etv1-206;Etv1-205;Etv1-212;Etv1-208;Etv1-210;Etv1-204;Etv1-202,Etv1;Etv1;Etv1;Etv1;Etv1;Etv1;Etv1;Etv1;Etv1;Etv1;Etv1,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,8,10,14009,ENSMUSG00000004151,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
6450,cg14443903,-0.00000416,0.00000318,-1.309233191,0.191424951,loss,ns,0.00000502,0.0000054,0.93008544,0.353050544,pos,ns,0.002726681,0.001581343,1.72428161,0.085653879,pos,ns,1.067252967,-0.000100676,0.0000544,-1.851268685,0.065081839,neg,ns,0.934721664,Zfp536,Zfp536_Intergenic_downstream,7,37312526,37312575,37312574,37312575,50,-,AAACATAAATTTCTATATTGCATTTATTTGGACTACCACTCAAATATGCG,Distal Intergenic,7,37472135,37479986,7852,2,Zfp536-204,167460,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,112,243937,ENSMUSG00000043456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16332,cg07724970,-0.0000175,0.0000103,-1.697660908,0.090575338,loss,ns,0.0000163,0.0000175,0.930082762,0.353051929,pos,ns,-0.002742774,0.005123758,-0.535305066,0.592822718,neg,ns,0.227075162,-0.000204972,0.000176206,-1.163252026,0.245621872,neg,ns,0.735427122,Lrpprc,Lrpprc_Intron,17,84749564,84749613,84749612,84749613,50,-,ATACAGCCAGACTAATGGTCTGATACCGATAGGGCCTGTTTGCTATGTCG,"Intron (Lrpprc-201/Lrpprc, intron 22 of 37)",17,84705247,84790558,85312,2,Lrpprc-201,40945,Lrpprc-201;Lrpprc-203;Lrpprc-204,Lrpprc;Lrpprc;Lrpprc,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,15,72416,ENSMUSG00000024120,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15821,cg02913140,-0.000013,0.00000856,-1.513777467,0.13110114,loss,ns,0.0000135,0.0000145,0.929824437,0.353185471,pos,ns,0.003790542,0.004259897,0.889819923,0.37425259,pos,ns,0.426835186,-0.000315924,0.000146498,-2.156515626,0.031812156,neg,ns,0.692644165,Mef2c,Mef2c_fiveUTR,13,83575669,83575718,83575669,83575670,50,-,CGGGGACTATGGGGAGAAAAAAGATTCAGATTACGAGGATTATGGATGAA,Promoter (<=1kb),13,83575677,83662631,86955,1,Mef2c-219,0,Mef2c-218;Mef2c-228;Mef2c-221;Mef2c-229;Mef2c-201;Mef2c-202;Mef2c-207;Mef2c-231;Mef2c-222;Mef2c-223;Mef2c-227;Mef2c-217;Mef2c-213;Mef2c-214;Mef2c-215;Mef2c-226;Mef2c-216;Mef2c-208;Mef2c-206;Mef2c-212;Mef2c-210;Mef2c-203;Mef2c-205;Mef2c-224;Mef2c-204;Mef2c-219;Mef2c-225,Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,9,41,17260,ENSMUSG00000005583,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27426,cg18188873,-0.00000183,0.0000212,-0.086160719,0.931394279,loss,ns,0.0000335,0.000036,0.929771048,0.353213075,pos,ns,-0.002821978,0.010555508,-0.267346532,0.789380137,neg,ns,0.102713806,0.000506803,0.000363003,1.396138919,0.163671626,pos,ns,0.599850645,Lmx1a,Lmx1a_Intron,1,167762006,167762055,167762054,167762055,50,+,GTTCAGCCTGCTCGGTGTGAAGCCTAATTCTTCCCCTTTCTGGAGCCACG,"Intron (Lmx1a-202/Lmx1a, intron 3 of 8)",1,167689237,167848741,159505,1,Lmx1a-202,72769,Lmx1a-202;Lmx1a-201,Lmx1a;Lmx1a,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,6,110648,ENSMUSG00000026686,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15167,cg11677981,0.0000194,0.0000035,5.541802978,0.000000064,gain,yes,-0.00000553,0.00000595,-0.929574229,0.353314848,neg,ns,0.004572278,0.001743467,2.622519635,0.009159375,pos,ns,2.038134153,-0.0000656,0.00006,-1.094507774,0.274582018,neg,ns,0.071166276,Polg,Polg_Intergenic_upstream,7,79497846,79497895,79497894,79497895,50,+,CCGGGGTGACCTGAACAAAGAATTTGGAAGTAGTTAAACTGCAGAACACG,Distal Intergenic,7,79446231,79466362,20132,2,Polg-201,-31484,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,16,18975,ENSMUSG00000039176,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
23883,cg21158933,0.000025,0.0000102,2.447982183,0.01492008,gain,ns,-0.0000161,0.0000173,-0.929537157,0.35333402,neg,ns,-0.002752733,0.005078412,-0.542045915,0.588176279,neg,ns,0.230492494,-0.000124335,0.000174646,-0.711925725,0.477046188,neg,ns,0.726550736,Rims3,Rims3_Exon,4,120891318,120891367,120891366,120891367,50,+,CCGCATGGACCACAAGTGCTTCATGGGCATGGCCCAGATCATGCTGGACG,"Exon (Rims3-201/Rims3, exon 8 of 8)",4,120854819,120896579,41761,1,Rims3-201,36499,Rims3-201;Rims3-202;Rims3-204,Rims3;Rims3;Rims3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,242662,ENSMUSG00000032890,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21798,cg02179016,0.0000815,0.0000107,7.625852791,2.99E-13,gain,yes,-0.0000169,0.0000182,-0.92942864,0.353390144,neg,ns,0.000576768,0.005321557,0.10838338,0.913761702,pos,ns,0.039167048,0.000233341,0.000183008,1.275032649,0.203252449,pos,ns,0.127740309,Lmo1,Lmo1_fiveUTR,7,109170106,109170155,109170106,109170107,50,+,CGGGCTCTAATTACCCGCTTGTCCGGCTCTTAACCTAGATTGCACTCAGC,Promoter (<=1kb),7,109138572,109170519,31948,2,Lmo1-201,364,Lmo1-201;Lmo1-202;Lmo1-203,Lmo1;Lmo1;Lmo1,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,66,109594,ENSMUSG00000036111,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
13346,cg12406539,0.0000732,0.0000277,2.642976926,0.008635614,gain,ns,-0.0000437,0.000047,-0.929381475,0.353414538,neg,ns,0.011300892,0.01378299,0.819915808,0.412894062,pos,ns,0.384161363,-0.000737185,0.000473996,-1.555256166,0.120905361,neg,ns,0.679381359,Trim9,Trim9_Exon,12,70255183,70255232,70255183,70255184,50,-,CGAAGGCACTGGAAAAGGGAGGGTCTGTTCTTCTGAATCTGTGTCTAAAT,"Exon (Trim9-202/Trim9, exon 9 of 14)",12,70244533,70347350,102818,2,Trim9-202,92118,Trim9-202;Trim9-201;Trim9-211;Trim9-209;Trim9-206;Trim9-212,Trim9;Trim9;Trim9;Trim9;Trim9;Trim9,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,7,94090,ENSMUSG00000021071,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4136,cg26837547,-0.00000449,0.00000177,-2.546542663,0.011362926,loss,ns,0.00000279,0.000003,0.929356511,0.353427451,pos,ns,0.000768299,0.000878513,0.874544637,0.382498749,pos,ns,0.417369981,-0.0000179,0.0000302,-0.594131114,0.55285774,neg,ns,0.96433758,Syngap1,Syngap1_Exon,17,26957809,26957858,26957809,26957810,50,+,CGCTTGCCACTAAAGCCATAGAAGAGTATATGAGACTGATTGGTCAGAAA,Promoter (<=1kb),17,26957826,26960111,2286,1,Syngap1-211,0,Syngap1-204;Syngap1-213;Syngap1-208;Syngap1-202;Syngap1-207;Syngap1-203;Syngap1-201;Syngap1-212;Syngap1-214;Syngap1-211;Syngap1-205;Syngap1-206,Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1,0;0;0;0;0;0;0;0;0;0;-1980;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,18,240057,ENSMUSG00000067629,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19494,cg23006178,0.00000331,0.0000159,0.207702247,0.835597844,gain,ns,0.0000251,0.000027,0.929305285,0.353453947,pos,ns,0.016800296,0.007921172,2.1209357,0.034720781,pos,ns,1.459410514,-0.000584117,0.000272408,-2.144268258,0.032788748,neg,ns,0.661164794,Gm12684,Gm12684_Intergenic_upstream,4,99445804,99445853,99445852,99445853,50,-,AAAACATTTTTCTTTGTCCTTCCCACAGACCCACAAATCCTCCCCAAGCG,Distal Intergenic,4,99430256,99431254,999,2,Gm12684-201,-14599,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,8,665212,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11425,cg07032889,0.00000581,0.00000271,2.139853899,0.033147015,gain,ns,0.00000429,0.00000461,0.929303577,0.353454831,pos,ns,0.000993544,0.001351145,0.735334717,0.462691619,pos,ns,0.334708367,-0.0000478,0.0000465,-1.027772306,0.304858204,neg,ns,0.047120348,Fgf9,Fgf9_Intron,14,58072588,58072637,58072588,58072589,50,+,CGCATGCCTTCCTGGAGTCAGGATCCGTAAATTCTGACGTAGCCCGTGCA,"Intron (Fgf9-203/Fgf9, intron 1 of 2)",14,58070547,58112720,42174,1,Fgf9-203,2041,Fgf9-203;Fgf9-201;Fgf9-202;Fgf9-204,Fgf9;Fgf9;Fgf9;Fgf9,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,8,14180,ENSMUSG00000021974,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22884,cg11686722,0.0000161,0.00000382,4.21867992,0.0000323,gain,ns,0.00000603,0.00000649,0.92928293,0.353465512,pos,ns,-0.00034987,0.001900277,-0.18411536,0.854043335,neg,ns,0.068520092,0.0000666,0.0000654,1.018963137,0.309015027,pos,ns,0.033790972,Meis2,Meis2_fiveUTR,2,116064819,116064868,116064867,116064868,50,-,TGCGCTCCAATAAACTCCTGGATGTGTCGTATATTTAATATCCCAGTCCG,Promoter (<=1kb),2,115863064,116065047,201984,2,Meis2-201,179,Meis2-201;Meis2-203;Meis2-205;Meis2-206;Meis2-204;Meis2-202;Meis2-213;Meis2-210;Meis2-209,Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2,0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,11,97,17536,ENSMUSG00000027210,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
27936,cg04564770,-0.0000662,0.0000242,-2.734854235,0.006599949,loss,ns,-0.0000382,0.0000411,-0.929254435,0.353480251,neg,ns,0.019233457,0.012055061,1.595467412,0.111626675,pos,ns,0.952232012,-0.001258233,0.000414573,-3.035012989,0.002609034,neg,ns,0.648346551,Rps6kc1,Rps6kc1_Intergenic_downstream,1,190655719,190655768,190655767,190655768,50,-,TAAAAGCAAATAATCAAATACATTCAATTTGAAAAGTTGGCAAACTCGCG,Distal Intergenic,1,190808888,190810463,1576,2,Rps6kc1-207,154744,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,14,29,320119,ENSMUSG00000089872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6921,cg13684228,0.00000293,0.00000537,0.546646954,0.585014546,gain,ns,0.00000847,0.00000912,0.929173943,0.353521891,pos,ns,0.007112834,0.002670959,2.663026113,0.008148564,pos,ns,2.088918906,-0.000282204,0.0000919,-3.072306822,0.002312562,neg,ns,0.905334809,Rims2,Rims2_Exon,15,39566969,39567018,39566969,39566970,50,+,CGCCAAATGAAAATTAACAAATACAAACAGGTAGCCGGATCAGATCCCAG,"Exon (Rims2-202/Rims2, exon 20 of 27)",15,39198332,39681940,483609,1,Rims2-202,368637,Rims2-202;Rims2-205;Rims2-201;Rims2-206,Rims2;Rims2;Rims2;Rims2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,16,19,116838,ENSMUSG00000037386,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
374,cg17575365,0.0000516,0.0000068,7.580419086,4.02E-13,gain,yes,-0.0000107,0.0000116,-0.929135733,0.353541659,neg,ns,0.004779516,0.003385423,1.411792864,0.159013907,pos,ns,0.798564893,0.0000538,0.000116424,0.462413512,0.644109198,pos,ns,0.710688793,Cdk14,Cdk14_fiveUTR,5,5265667,5265716,5265715,5265716,50,-,TACAGCAACTGAATTCACATCTTTCTGCACTAGCAAGCTGAAATGGTACG,Promoter (<=1kb),5,4803391,5266068,462678,2,Cdk14-203,352,Cdk14-203;Cdk14-201;Cdk14-202;Cdk14-204;Cdk14-207;Cdk14-208;Cdk14-206;Cdk14-210;Cdk14-205;Cdk14-212;Cdk14-209,Cdk14;Cdk14;Cdk14;Cdk14;Cdk14;Cdk14;Cdk14;Cdk14;Cdk14;Cdk14;Cdk14,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,16,18647,ENSMUSG00000028926,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23425,cg20993535,-0.00000483,0.00000139,-3.470665313,0.000592816,loss,ns,0.0000022,0.00000237,0.929131194,0.353544007,pos,ns,0.001935099,0.000693237,2.791396955,0.005573707,pos,ns,2.253855887,-0.00000584,0.0000238,-0.244814174,0.806762289,neg,ns,0.05459226,Gm15754,Gm15754_Intergenic_upstream,5,118380823,118380872,118380823,118380824,50,-,CGGCCAGCATTGGGGATGTGTAATTGATTGCCTGCATTATAATAAACAAG,Distal Intergenic,5,118486967,118503500,16534,1,Gm15754-202,-106144,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,665162,NA,mapped to different genes,5,118380803,118381003,201,*,201,23,0.646766169,1.15575,0.114427861,2.83E-19,CpGisland,TRUE,NA,NRS
14092,cg12838514,0.000104171,0.000011,9.464567181,7.74E-19,gain,yes,-0.0000174,0.0000187,-0.929071642,0.353574817,neg,ns,0.001018496,0.005477994,0.185924924,0.852625235,pos,ns,0.069241818,0.000430222,0.000188388,2.283703974,0.02306509,pos,ns,0.319940337,Evx2,Evx2_Promoter,2,74659592,74659641,74659640,74659641,50,+,TGACCCATACATCCTTCCGATCCCGAGATGTCATTCATCAAAAAGTAGCG,Promoter (<=1kb),2,74652991,74659557,6567,2,Evx2-201,-35,Evx2-201;Evx2-202,Evx2;Evx2,0;-173,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,9,35,14029,ENSMUSG00000001815,conserved gene and region,2,74659459,74659676,218,*,218,14,0.5,1.031778229,0.064220184,2.09E-08,CpGisland,TRUE,U13,Hc-P
26834,cg04218899,0.00000176,0.00000133,1.325387135,0.186018733,gain,ns,0.0000021,0.00000226,0.928968885,0.353627984,pos,ns,0.001569193,0.000662399,2.368954181,0.018451125,pos,ns,1.733977157,-0.0000262,0.0000228,-1.15017409,0.250958664,neg,ns,0.031368077,Lamc2,Lamc2_fiveUTR,1,153186079,153186128,153186079,153186080,50,-,CGACTCTTCTACCTGACTCAGTCCTGACAGGAAGAGAGCCTGTGTTTCAG,Promoter (<=1kb),1,153122756,153186447,63692,2,Lamc2-201,319,Lamc2-203;Lamc2-201;Lamc2-205,Lamc2;Lamc2;Lamc2,-32;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,1,16782,ENSMUSG00000026479,conserved gene but different region,1,153185936,153186287,352,*,352,32,0.673295455,0.804571429,0.090909091,2.94E-23,CpGisland,TRUE,U3,Pr-B
21207,cg20404157,-0.00000243,0.00000452,-0.539131812,0.590182882,loss,ns,0.00000713,0.00000767,0.928949344,0.353638095,pos,ns,0.004644685,0.00224778,2.066343479,0.039626361,pos,ns,1.402015811,-0.000157186,0.0000773,-2.033431802,0.042860402,neg,ns,0.902002126,Rad54l2,Rad54l2_fiveUTR,9,106754059,106754108,106754059,106754060,50,-,CGCTCCCTGAGGCAGATTCGTCTGACATGGCTCCCAGAGGTCCTCAGTGG,5' UTR,9,106688082,106789194,101113,2,Rad54l2-201,35086,Rad54l2-201,Rad54l2,0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,5,81000,ENSMUSG00000040661,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3160,cg14387043,0.0000821,0.00000759,10.81425637,2.43E-23,gain,yes,-0.000012,0.0000129,-0.92885997,0.353684343,neg,ns,0.010241067,0.00378007,2.709226936,0.007119001,pos,ns,2.147580965,-0.000183845,0.000129996,-1.414233334,0.158296935,neg,ns,0.117784156,Nol4,Nol4_Exon,18,23039979,23040028,23040027,23040028,50,-,AGTCCCCGTAAGTCCTGAGGCACCAGTCCTGGAACTGGCGGTACATGTCG,"Exon (Nol4-204/Nol4, exon 1 of 10)",18,22693634,23041653,348020,2,Nol4-204,1625,Nol4-202;Nol4-204;Nol4-208;Nol4-206;Nol4-209,Nol4;Nol4;Nol4;Nol4;Nol4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,16,21,319211,ENSMUSG00000041923,conserved gene and region,18,23039723,23040174,452,*,452,35,0.595132743,0.893280632,0.077433628,6.56E-23,CpGisland,TRUE,U13,Hc-P
23912,cg09090112,0.0000413,0.00000599,6.886600992,3.19E-11,gain,yes,0.00000946,0.0000102,0.928852711,0.353688099,pos,ns,0.005501858,0.002983773,1.843926612,0.06614801,pos,ns,1.17948322,0.000059,0.000102612,0.574882554,0.565787705,pos,ns,0.127428318,Insig2,Insig2_Intron,1,121097320,121097369,121097320,121097321,50,+,CGGATTAATGCTGATAGTAAAGTCAGATAATACAATAACAGAGGCCTCCG,"Intron (Celrr-202/Celrr-202, intron 1 of 4)",1,121305893,121307318,1426,2,Insig2-206,209949,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,17,72999,ENSMUSG00000003721,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
3836,cg22673414,-0.00000279,0.00000212,-1.315426923,0.189338532,loss,ns,-0.00000334,0.0000036,-0.92860984,0.353813796,neg,ns,-0.001718672,0.001054247,-1.630235469,0.104067324,neg,ns,0.982685613,0.0000174,0.0000363,0.480855177,0.630958624,pos,ns,0.908156354,Fgfr1,Fgfr1_threeUTR,8,25563399,25563448,25563399,25563400,50,-,CGGAGGTGCTGACCCTGTTCAATGTGACAGAGGCCCAGAGCGGGGAGTAT,Promoter (<=1kb),8,25563405,25574785,11381,1,Fgfr1-206,0,Fgfr1-201;Fgfr1-214;Fgfr1-215;Fgfr1-203;Fgfr1-202;Fgfr1-213;Fgfr1-208;Fgfr1-209;Fgfr1-206;Fgfr1-216;Fgfr1-204;Fgfr1-219,Fgfr1;Fgfr1;Fgfr1;Fgfr1;Fgfr1;Fgfr1;Fgfr1;Fgfr1;Fgfr1;Fgfr1;Fgfr1;Fgfr1,0;0;0;0;0;0;0;0;0;-2552;-3402;-3418,TRUE,FALSE,TRUE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,7,8,14182,ENSMUSG00000031565,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23254,cg11221149,-0.0000222,0.00000391,-5.692159519,2.91E-08,loss,yes,0.00000617,0.00000664,0.928572731,0.353833004,pos,ns,-0.004060179,0.001945415,-2.087050038,0.037700198,neg,ns,1.423656369,-0.000120048,0.0000669,-1.794366341,0.073728964,neg,ns,0.916577005,Eri3,Eri3_Intron,4,117624619,117624668,117624619,117624620,50,+,CGGCACTGTTACTTTGATTGGTATTCTAACCTTTGACTAGCCCATAAAGC,"Intron (Eri3-201/Eri3, intron 7 of 8)",4,117550365,117674297,123933,1,Eri3-201,74254,Eri3-201;Eri3-206,Eri3;Eri3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,82,97,140546,ENSMUSG00000033423,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7652,cg21858781,-0.000022,0.00000393,-5.596246934,4.82E-08,loss,yes,0.0000062,0.00000668,0.928552764,0.35384334,pos,ns,-0.003564439,0.001957689,-1.820738716,0.069610551,neg,ns,1.157324928,0.000107573,0.0000673,1.597825956,0.111100476,pos,ns,0.904678229,Zbtb20,Zbtb20_Intron,16,43577276,43577325,43577276,43577277,50,-,CGTAGCTCAAGCTGTCTAAAGTTCTGGGACAGGGTCTTTTTATGCAGCCA,"Intron (Zbtb20-217/Zbtb20, intron 9 of 9)",16,42907645,43577725,670081,1,Zbtb20-217,669631,Zbtb20-217;Zbtb20-204;Zbtb20-215;Zbtb20-201;Zbtb20-203;Zbtb20-213;Zbtb20-219;Zbtb20-216;Zbtb20-208;Zbtb20-220;Zbtb20-206;Zbtb20-202;Zbtb20-205,Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,Intron,64,98,56490,ENSMUSG00000022708,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8151,cg01745451,-0.00000761,0.00000286,-2.657758176,0.008274084,loss,ns,0.00000452,0.00000487,0.928550215,0.353844659,pos,ns,0.002230996,0.001425674,1.56487098,0.118633372,pos,ns,0.925793123,-0.000118645,0.000049,-2.419900582,0.016099616,neg,ns,0.940953233,Ebf1,Ebf1_Intron,11,44800437,44800486,44800437,44800438,50,+,CGGCATTCAGTAATATTTCAGGAAATTTGCATATTAAATGGAGAGGGTCG,"Intron (Ebf1-203/Ebf1, intron 6 of 15)",11,44617317,45004995,387679,1,Ebf1-203,183120,Ebf1-203;Ebf1-202;Ebf1-201,Ebf1;Ebf1;Ebf1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,80,13591,ENSMUSG00000057098,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11480,cg19296119,-0.0000208,0.00000358,-5.799676314,1.64E-08,loss,yes,-0.00000565,0.00000608,-0.928132577,0.354060884,neg,ns,-0.003675855,0.001782513,-2.062175778,0.040024032,neg,ns,1.397679166,-0.0000403,0.0000613,-0.657126092,0.511587408,neg,ns,0.936846626,Insyn1,Insyn1_Intron,9,58467560,58467609,58467608,58467609,50,+,TGCCTATCAGAGGCTAATAATACTGCAGCAGCGTGTTAATTGCAAAGACG,"Intron (4930461G14Rik-201/4930461G14Rik-201, intron 2 of 2)",9,58488603,58499742,11140,1,Insyn1-201,-20994,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,4,319477,ENSMUSG00000066607,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24922,cg21081897,0.000000281,0.000000518,0.542903484,0.587586375,gain,ns,0.000000817,0.00000088,0.928018719,0.354119846,pos,ns,0.0000125,0.00025778,0.048531429,0.961323969,pos,ns,0.017130229,0.00000177,0.00000887,0.199710589,0.841837869,pos,ns,0.985409312,Tmem39b,Tmem39b_threeUTR,4,129692019,129692068,129692067,129692068,50,+,ATGAGGGATCGGCACAGACTCCAGCCTGTTGCCGTGAGAACGGTGAAGCG,3' UTR,4,129676355,129696796,20442,2,Tmem39b-202,4728,Tmem39b-202;Tmem39b-201;Tmem39b-203;Tmem39b-204,Tmem39b;Tmem39b;Tmem39b;Tmem39b,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,3,230770,ENSMUSG00000053730,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5457,cg18629679,-0.0000268,0.00000519,-5.155374637,0.000000452,loss,yes,-0.00000819,0.00000882,-0.927896399,0.354183198,neg,ns,-0.002839469,0.002584822,-1.09851624,0.272831575,neg,ns,0.564105369,0.00000285,0.0000889,0.032096908,0.974415424,pos,ns,0.943498165,Kalrn,Kalrn_Exon,16,34010514,34010563,34010562,34010563,50,+,TTACTCACTTTAACAGAGACTTTGTTGCCCAGAATATCCTTGGGTTTACG,"Exon (Kalrn-212/Kalrn, exon 17 of 27)",16,33969073,34095987,126915,2,Kalrn-212,85424,Gm49594-201;Kalrn-212;Kalrn-201;Kalrn-220;Kalrn-209;Kalrn-211;Kalrn-217;Kalrn-210;Kalrn-221,Gm49594;Kalrn;Kalrn;Kalrn;Kalrn;Kalrn;Kalrn;Kalrn;Kalrn,-3057;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,18,22,545156,ENSMUSG00000061751,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8575,cg10452170,0.0000142,0.00000126,11.25599946,7.15E-25,gain,yes,-0.00000198,0.00000214,-0.927793624,0.354236432,neg,ns,0.000847651,0.000626574,1.352835367,0.177094067,pos,ns,0.751795988,0.0000292,0.0000215,1.355924678,0.176110008,pos,ns,0.018790194,Ppfia3,Ppfia3_Exon,7,45361754,45361803,45361754,45361755,50,-,CGAGCCCCGCCGGCCATCCTCGCTGATGGTGGGCATCACCTCGCACATCA,Promoter (<=1kb),7,45339122,45361822,22701,2,Ppfia3-204,19,Ppfia3-204;Ppfia3-207;Ppfia3-201;Ppfia3-205;Ppfia3-203;Ppfia3-202,Ppfia3;Ppfia3;Ppfia3;Ppfia3;Ppfia3;Ppfia3,0;0;0;0;-1641;5161,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,76787,ENSMUSG00000003863,conserved gene and region,7,45361420,45361830,411,*,411,43,0.669099757,0.979873586,0.104622871,7.52E-34,CpGisland,TRUE,U3,Pr-B
3157,cg25630450,0.0000452,0.00000726,6.217941583,1.63E-09,gain,yes,0.0000114,0.0000123,0.927601167,0.354336133,pos,ns,0.004341786,0.00361527,1.200957537,0.230684477,pos,ns,0.636981628,-0.00000563,0.000124329,-0.045253174,0.963934647,neg,ns,0.094296578,Nol4,Nol4_Exon,18,23039954,23040003,23039954,23039955,50,-,CGGGTCACCGTCTTGGTCTTGCCTGAGTCCCCGTAAGTCCTGAGGCACCA,"Exon (Nol4-204/Nol4, exon 1 of 10)",18,22693634,23041653,348020,2,Nol4-204,1650,Nol4-202;Nol4-204;Nol4-208;Nol4-206;Nol4-209,Nol4;Nol4;Nol4;Nol4;Nol4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,16,21,319211,ENSMUSG00000041923,conserved gene and region,18,23039723,23040174,452,*,452,35,0.595132743,0.893280632,0.077433628,6.56E-23,CpGisland,TRUE,U13,Hc-P
26303,cg18384139,-0.00000854,0.00000402,-2.121879987,0.034640734,loss,ns,-0.00000634,0.00000684,-0.927565943,0.354354382,neg,ns,0.001432205,0.002002569,0.715183523,0.475033922,pos,ns,0.323275377,-0.000148022,0.0000689,-2.149347108,0.032380679,neg,ns,0.919044062,Ralgapa2,Ralgapa2_Intron,2,146325036,146325085,146325084,146325085,50,+,CCTGGCGGTATGTGCAGTGTGTCGAGTCTGCGTGGCACCCTTTGTCCTCG,"Intron (Ralgapa2-202/Ralgapa2, intron 37 of 40)",2,146239879,146512004,272126,2,Ralgapa2-202,186919,Ralgapa2-202;Ralgapa2-211;Ralgapa2-210;Ralgapa2-205;Ralgapa2-208,Ralgapa2;Ralgapa2;Ralgapa2;Ralgapa2;Ralgapa2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,26,241694,ENSMUSG00000037110,conserved gene and region,2,146325000,146325095,96,*,96,8,0.65625,0.775757576,0.083333333,0.00000859,CpGisland,TRUE,U10,Tr-S
21913,cg03556771,-0.000000869,0.00000095,-0.914894396,0.360958152,loss,ns,0.0000015,0.00000161,0.927466184,0.35440607,pos,ns,0.000800381,0.00047261,1.693531867,0.091358774,pos,ns,1.039249737,-0.0000173,0.0000163,-1.062565586,0.28880604,neg,ns,0.97922736,Rtl1,Rtl1_Exon,12,109710629,109710678,109710629,109710630,50,-,CGGTACTTGAAGAAATGGTTTACCGTCCCACATACATTTTGAATATGTAT,"Exon (Mir299a-201/Mir299a-201, exon 1 of 1)",12,109589193,109600330,11138,2,Rtl1-201,-110348,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,9,353326,ENSMUSG00000085925,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14211,cg13962261,-0.00000164,0.00000164,-1.003852682,0.316232545,loss,ns,0.00000258,0.00000278,0.927391844,0.354444591,pos,ns,0.002468841,0.000814075,3.032693239,0.002628582,pos,ns,2.580278467,-0.0000616,0.000028,-2.202084047,0.028395486,neg,ns,0.025822922,Mnt,Mnt_Exon,11,74831350,74831399,74831398,74831399,50,+,GAGGCGGCCCGCTTCCTGGAATGGCAAGCGCAGCAACAACAGAGAGCACG,Promoter (<=1kb),11,74830920,74845725,14806,1,Mnt-201,430,Mettl16-205;Mnt-201;Mnt-203,Mettl16;Mnt;Mnt,60520;0;-4927,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,17,17428,ENSMUSG00000000282,conserved gene and region,11,74831171,74831413,243,*,243,27,0.720164609,0.867168914,0.111111111,3.45E-22,CpGisland,TRUE,U1,Pr-A
5074,cg16135308,0.000000801,0.0000012,0.665175527,0.506432796,gain,ns,0.0000019,0.00000204,0.927205148,0.354541344,pos,ns,-0.00011082,0.00059908,-0.184984185,0.853362404,neg,ns,0.068866494,-0.0000134,0.0000206,-0.648998064,0.516820138,neg,ns,0.977357624,Sgms1,Sgms1_Exon,19,32159633,32159682,32159681,32159682,50,-,TGTCCGGTAGTGGAGGCTGCACCTCCTTAGGAGGTACTCGTTCGTGGACG,"Exon (Sgms1-201/Sgms1, exon 6 of 10)",19,32122727,32388512,265786,2,Sgms1-201,228830,Sgms1-201;Sgms1-212;Sgms1-209;Sgms1-215;Sgms1-214;Sgms1-206;Sgms1-202;Sgms1-213;Sgms1-210;Sgms1-208;Sgms1-205,Sgms1;Sgms1;Sgms1;Sgms1;Sgms1;Sgms1;Sgms1;Sgms1;Sgms1;Sgms1;Sgms1,0;0;0;0;0;0;0;36746;79130;163547;117244,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,8,208449,ENSMUSG00000040451,conserved gene and region,19,32159576,32159686,111,*,111,9,0.504504505,1.274234694,0.081081081,0.00000221,CpGisland,TRUE,U10,Tr-S
20608,cg12459542,-0.00000396,0.00000206,-1.921946829,0.05552887,loss,ns,-0.00000325,0.0000035,-0.927098908,0.354596408,neg,ns,-0.001363314,0.001026044,-1.328709679,0.184920982,neg,ns,0.73301381,-0.0000307,0.0000353,-0.870160916,0.384885756,neg,ns,0.029301057,Rsbn1,Rsbn1_Exon,3,103914587,103914636,103914635,103914636,50,+,GTGAAATGGCTGCGCAGGTCGGAGCGGTGCGCGTAGTACGGGCGGTGGCG,Promoter (<=1kb),3,103914120,103966613,52494,1,Rsbn1-201,467,Ptpn22-204;Ptpn22-201;Ptpn22-202;Rsbn1-201;Rsbn1-202;Rsbn1-203,Ptpn22;Ptpn22;Ptpn22;Rsbn1;Rsbn1;Rsbn1,54792;54310;12548;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,16,229675,ENSMUSG00000044098,conserved gene and region,3,103914092,103915120,1029,*,1029,106,0.664723032,0.937553185,0.103012634,8.89E-82,CpGisland,TRUE,U1,Pr-A
18757,cg16620594,-0.00000192,0.00000141,-1.357324395,0.175665497,loss,ns,0.00000222,0.0000024,0.927046149,0.354623755,pos,ns,0.000938051,0.000702652,1.335015853,0.182850713,pos,ns,0.737903342,-0.0000281,0.0000242,-1.163603596,0.245479517,neg,ns,0.957698012,Uba3,Uba3_threeUTR,6,97203517,97203566,97203517,97203518,50,+,CGCTCGAGGAACTTCTTTACATGGTTCCAGCGACCTTCCCAGTCTCCAGT,3' UTR,6,97183670,97205560,21891,2,Uba3-202,1994,Uba3-202;Uba3-204;Uba3-201;Uba3-205;Uba3-203,Uba3;Uba3;Uba3;Uba3;Uba3,0;0;0;0;2002,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,4,22200,ENSMUSG00000030061,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
24663,cg25708928,-0.00000477,0.00000252,-1.892242667,0.059390282,loss,ns,-0.00000397,0.00000428,-0.927010418,0.354642277,neg,ns,-0.002010125,0.001254588,-1.602219338,0.110125546,neg,ns,0.958111927,0.000067,0.0000431,1.552818257,0.121486844,pos,ns,0.943511058,Gm42715,Gm42715_Exon,7,127519588,127519637,127519588,127519589,50,+,CGGACGGCATGACAGGCAGCAATCCTGTGTCCCCTGCCTCATCCAGTTCC,Promoter (<=1kb),7,127519584,127567054,47471,1,Gm42715-201,4,Gm42715-201;Srcap-203;Srcap-210;Srcap-211;Srcap-202;Srcap-209;Srcap-212;Srcap-204;Srcap-201;Srcap-208;Srcap-207;Srcap-205;Srcap-206;Srcap-214,Gm42715;Srcap;Srcap;Srcap;Srcap;Srcap;Srcap;Srcap;Srcap;Srcap;Srcap;Srcap;Srcap;Srcap,0;0;0;0;0;7476;7287;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,7,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4290,cg09568244,-0.00000567,0.00000616,-0.921258032,0.357632106,loss,ns,-0.0000097,0.0000105,-0.927007453,0.354643814,neg,ns,-0.001978962,0.00306482,-0.645702543,0.518949667,neg,ns,0.284874762,-0.0000507,0.000105399,-0.480913384,0.630917299,neg,ns,0.915078288,Olfm1,Olfm1_Exon,2,28214619,28214668,28214619,28214620,50,+,CGAAAATGGATGAACTTAGGCCTTTGATACCTGTGTTGGAAGAGTACAAG,"Exon (Olfm1-204/Olfm1, exon 4 of 6)",2,28192992,28230462,37471,1,Olfm1-204,21627,Olfm1-205;Olfm1-204;Olfm1-202;Olfm1-203;Olfm1-201,Olfm1;Olfm1;Olfm1;Olfm1;Olfm1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,56177,ENSMUSG00000026833,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13587,cg02906143,-0.0000115,0.00000595,-1.928363261,0.054722969,loss,ns,0.00000937,0.0000101,0.926947482,0.354674902,pos,ns,-0.005074192,0.002962652,-1.712719745,0.087764012,neg,ns,1.05668353,0.000119084,0.000101885,1.16880651,0.243379589,pos,ns,0.861978231,Polr2m,Polr2m_Intergenic_downstream,9,71457112,71457161,71457112,71457113,50,-,CGGGGCCATAAATCAATTGGCAAGAGGTCGTAAACTGCAAGATTGGTGCT,Distal Intergenic,9,71478471,71484958,6488,2,Polr2m-202,27846,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,3,28015,ENSMUSG00000032199,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18410,cg24257227,-0.00000473,0.00000306,-1.546590123,0.122982341,loss,ns,0.00000482,0.0000052,0.926936675,0.354680504,pos,ns,-0.000176656,0.001523683,-0.115940172,0.907775026,neg,ns,0.042021769,0.0000305,0.0000524,0.582906866,0.560379771,pos,ns,0.936953128,Cngb1,Cngb1_Exon,8,95253314,95253363,95253362,95253363,50,-,GGGATCTTGTAGAAATTCATGTACTTCACCGTGCTGTCCATGCAGCTGCG,"Exon (Cngb1-202/Cngb1, exon 27 of 33)",8,95239045,95306585,67541,2,Cngb1-202,53222,Cngb1-202;Cngb1-203;Cngb1-204,Cngb1;Cngb1;Cngb1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,333329,ENSMUSG00000031789,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12895,cg18267374,0.0000412,0.0000058,7.102196942,8.44E-12,gain,yes,-0.00000914,0.00000986,-0.926899191,0.354699937,neg,ns,0.007297146,0.002887375,2.527260102,0.011992586,pos,ns,1.921087169,-0.0000957,0.0000993,-0.963578591,0.336008283,neg,ns,0.053630189,Nefm,Nefm_fiveUTR,14,68124798,68124847,68124846,68124847,50,+,CCAACGTGTAGCTCATCTTGGAGGCCTTGGGGCGTGTGGCTGTCACAGCG,Promoter (<=1kb),14,68082590,68124846,42257,2,Nefm-202,0,Nefm-202;Nefm-201,Nefm;Nefm,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,4,18040,ENSMUSG00000022054,mapped to different genes,14,68124846,68125102,257,*,257,25,0.723735409,0.743634259,0.097276265,4.87E-19,CpGisland,TRUE,U3,Pr-B
16821,cg21633612,-0.0000293,0.00000854,-3.430483969,0.000684162,loss,ns,0.0000134,0.0000145,0.92646082,0.354927246,pos,ns,-0.00430128,0.004250262,-1.012003505,0.312325598,neg,ns,0.505392419,-0.000148955,0.000146166,-1.01908274,0.308958338,neg,ns,0.759665482,Gm8504,Gm8504_Intergenic_upstream,12,86636063,86636112,86636111,86636112,50,-,TTAATATCCCCTAATGACTTCATATTTCAGACCTGACATTAAAGGAGACG,Distal Intergenic,12,86650573,86651662,1090,1,Gm8504-201,-14510,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,8,667191,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9271,cg03127034,0.00000493,0.00000406,1.214004495,0.225670055,gain,ns,0.00000639,0.0000069,0.926459666,0.354927845,pos,ns,-0.000612066,0.002021573,-0.302767092,0.762270424,neg,ns,0.117890931,0.0000179,0.0000695,0.256797307,0.797505598,pos,ns,0.872771551,Foxp4,Foxp4_Intron,17,47872557,47872606,47872605,47872606,50,-,TACGGGGCTCCGATCCTCCGCTTTGCAAATGAGAATGACCCCAATTTCCG,"Intron (Foxp4-204/Foxp4, intron 13 of 16)",17,47867133,47924645,57513,2,Foxp4-204,52039,Foxp4-204;Foxp4-203;Foxp4-201;Foxp4-202,Foxp4;Foxp4;Foxp4;Foxp4,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,25,74123,ENSMUSG00000023991,conserved gene and region,17,47872440,47872721,282,*,282,26,0.563829787,1.163809524,0.092198582,3.73E-19,CpGisland,TRUE,U10,Tr-S
14140,cg23194298,0.00000737,0.00000195,3.775389125,0.000191448,gain,ns,0.00000307,0.00000332,0.926428525,0.354943995,pos,ns,0.002731572,0.000971981,2.810314222,0.005264117,pos,ns,2.278674446,-0.0000805,0.0000334,-2.409184346,0.016571007,neg,ns,0.042001551,Hoxd10,Hoxd10_Exon,2,74694282,74694331,74694330,74694331,50,+,TGGTTTCAAAACCGCCGAATGAAACTCAAGAAGATGAGCCGAGAGAACCG,"Exon (Hoxd10-201/Hoxd10, exon 2 of 2)",2,74691924,74695105,3182,1,Hoxd10-201,2358,Hoxd10-201;Hoxd9-201,Hoxd10;Hoxd9,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,21,24,15430,ENSMUSG00000050368,conserved gene and region,2,74694222,74694348,127,*,127,12,0.519685039,1.400735294,0.094488189,3.59E-09,CpGisland,TRUE,U13,Hc-P
14323,cg17554167,-0.0000233,0.00000569,-4.098927534,0.0000531,loss,ns,-0.00000895,0.00000966,-0.926164388,0.355081008,neg,ns,-0.006355689,0.002831509,-2.244629605,0.025496965,neg,ns,1.593511514,0.000245398,0.0000974,2.520125326,0.012233331,pos,ns,0.877295129,Smg6,Smg6_Intron,11,75161286,75161335,75161286,75161287,50,+,CGATGTTGAATTTTAAAATCATGTGGATTATGGCGGATGGGGCCTGACAA,"Intron (Smg6-201/Smg6, intron 18 of 18)",11,74925823,75164448,238626,1,Smg6-201,235463,Hic1-201;Smg6-201;Smg6-202;Smg6-206,Hic1;Smg6;Smg6;Smg6,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,34,103677,ENSMUSG00000038290,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4439,cg06715092,0.0000425,0.00000327,12.97975182,4.60E-31,gain,yes,0.00000515,0.00000556,0.926071081,0.355129415,pos,ns,0.003516835,0.001628936,2.158976656,0.031618969,pos,ns,1.5000523,0.00000352,0.000056,0.062915432,0.949874393,pos,ns,0.075615699,Barhl1,Barhl1_fiveUTR,2,28915833,28915882,28915881,28915882,50,+,AGCTCTGGGCCAACCTCCTCTGCGCATTAGATCCAAAAGGGCTCAGTGCG,Promoter (<=1kb),2,28907679,28916412,8734,2,Barhl1-201,530,Barhl1-201;Barhl1-204;Barhl1-203;Barhl1-202;Barhl1-205,Barhl1;Barhl1;Barhl1;Barhl1;Barhl1,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,6,54422,ENSMUSG00000026805,conserved gene but different region,2,28915735,28915915,181,*,181,15,0.701657459,0.673363095,0.082872928,1.54E-10,CpGisland,TRUE,U13,Hc-P
2440,cg20300086,0.0000022,0.0000157,0.140275457,0.888533454,gain,ns,0.0000246,0.0000266,0.925997345,0.355167673,pos,ns,0.006532446,0.007795458,0.837981016,0.402686985,pos,ns,0.395032407,-0.0000622,0.000268085,-0.231895849,0.816771912,neg,ns,0.263882383,Ptf1a,Ptf1a_Intergenic_downstream,2,19451614,19451663,19451662,19451663,50,+,ACAAATCAACCATTACATATGTTTTGTGTCTCCATATTTTGATCCGTACG,Distal Intergenic,2,19445663,19447501,1839,1,Ptf1a-201,5951,Ptf1a-201,Ptf1a,5951,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,14,21,19213,ENSMUSG00000026735,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
18446,cg24078962,0.000026,0.0000313,0.828934672,0.407779161,gain,ns,0.0000493,0.0000532,0.925981472,0.355175909,pos,ns,0.018861015,0.015599017,1.209115588,0.227539802,pos,ns,0.642942625,-0.000774608,0.000536449,-1.443954217,0.149761708,neg,ns,0.793085836,Trpc1,Trpc1_Exon,9,95743238,95743287,95743286,95743287,50,-,TTTCGTTTTCAATAGTTATGGTAACAGCATTTCTCCCAAGCACATCTACG,"Exon (Trpc1-204/Trpc1, exon 2 of 13)",9,95705082,95750358,45277,2,Trpc1-204,7071,Trpc1-204;Trpc1-201;Trpc1-206;Trpc1-207,Trpc1;Trpc1;Trpc1;Trpc1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,5,22063,ENSMUSG00000032839,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3442,cg26132310,0.0000183,0.0000102,1.79274496,0.073988564,gain,ns,-0.000016,0.0000173,-0.925816479,0.355261524,neg,ns,0.011391763,0.005076266,2.244122662,0.025529927,pos,ns,1.592950419,-0.000545212,0.000174572,-3.12312832,0.001958331,neg,ns,0.553788439,Bcl11a,Bcl11a_Exon,11,24085582,24085631,24085582,24085583,50,+,CGCCAGAGGATGACGATTGTTTATCAACGTCATCTAGAGGAATTTGCCCC,"Exon (Bcl11a-201/Bcl11a, exon 2 of 5)",11,24078056,24173194,95139,1,Bcl11a-201,7526,Bcl11a-201;Bcl11a-203;Bcl11a-205;Bcl11a-202;Bcl11a-204,Bcl11a;Bcl11a;Bcl11a;Bcl11a;Bcl11a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,51,98,14025,ENSMUSG00000000861,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
26192,cg26500182,0.0000344,0.00000298,11.54212401,7.06E-26,gain,yes,0.00000468,0.00000506,0.925742443,0.355299946,pos,ns,0.005879502,0.001481313,3.969115092,0.0000897,pos,ns,4.047203099,-0.0000204,0.0000509,-0.401332402,0.688451917,neg,ns,0.097847143,Ovol2,Ovol2_fiveUTR,2,144332092,144332141,144332092,144332093,50,+,CGGGGAAAAAGTTTCATAAGGTGGAATAGAAAAGGCACCAGGAAACTTGG,Promoter (<=1kb),2,144305175,144332146,26972,2,Ovol2-201,5,Ovol2-202;Ovol2-201;Ovol2-203,Ovol2;Ovol2;Ovol2,-397;0;-766,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,5,107586,ENSMUSG00000037279,conserved gene and region,2,144331878,144332093,216,*,216,23,0.717592593,0.903272727,0.106481482,1.68E-18,CpGisland,TRUE,U3,Pr-B
10523,cg09063828,-0.00000931,0.0000053,-1.757751467,0.079776748,loss,ns,0.00000833,0.000009,0.925740207,0.355301107,pos,ns,-0.002715896,0.002637054,-1.02989762,0.303860932,neg,ns,0.517325135,-0.0000832,0.0000907,-0.91703753,0.359835841,neg,ns,0.868576288,Npas3,Npas3_Intron,12,53988796,53988845,53988796,53988797,50,-,CGGTCCCAGCTTCTGTGACAGCCAACACTTGGGTAGTTGTTTGATTGCTA,"Intron (Npas3-204/Npas3, intron 5 of 10)",12,53248157,54069532,821376,1,Npas3-204,740639,Npas3-204;Npas3-201;Npas3-203,Npas3;Npas3;Npas3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,83,103,27386,ENSMUSG00000021010,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8634,cg16026813,0.0000803,0.0000172,4.68285715,0.00000424,gain,ns,-0.000027,0.0000291,-0.925698139,0.35532294,neg,ns,0.016059293,0.008536834,1.881176588,0.060884937,pos,ns,1.215490136,-0.000193076,0.000293581,-0.657656742,0.511246751,neg,ns,0.382543329,Btrc,Btrc_Intron,19,45476085,45476134,45476085,45476086,50,+,CGATCAATTCGCCTCGTTTTGGCTCTGTACTTAATGCACAAACAGTGCGA,"Intron (Btrc-204/Btrc, intron 1 of 2)",19,45363734,45507736,144003,1,Btrc-204,112351,Btrc-204;Btrc-201;Btrc-210;Btrc-202;Btrc-203;Btrc-209,Btrc;Btrc;Btrc;Btrc;Btrc;Btrc,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,63,98,12234,ENSMUSG00000025217,conserved gene and region,19,45476012,45476140,129,*,129,10,0.527131783,1.151785714,0.07751938,0.000000711,CpGisland,TRUE,NA,NRS
14168,cg05577301,0.0000324,0.00000847,3.821794906,0.000160099,gain,ns,0.0000133,0.0000144,0.925570983,0.355388938,pos,ns,0.019376861,0.004216057,4.595967747,0.00000628,pos,ns,5.202204893,-0.000511584,0.00014499,-3.528414495,0.000481338,neg,ns,0.225501133,Hoxd3,Hoxd3_Intron,2,74724746,74724795,74724746,74724747,50,-,CGAGCAATAAGGTGAAATGCAGGTCACAGCGTCTAACAAATATGAAAATG,"Intron (Hoxd3-203/Hoxd3, intron 1 of 2)",2,74711927,74748271,36345,1,Hoxd3-203,12819,Gm28230-201;Hoxd3-203;Hoxd4-203;Hoxd4-201;Hoxd4-202,Gm28230;Hoxd3;Hoxd4;Hoxd4;Hoxd4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,24,15434,ENSMUSG00000079277,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
12021,cg04304222,-0.0000894,0.0000115,-7.747769471,1.35E-13,loss,yes,0.0000181,0.0000196,0.925542522,0.355403711,pos,ns,-0.015008487,0.005744206,-2.612804524,0.009417946,neg,ns,2.026043812,0.0000885,0.000197543,0.448174382,0.654340414,pos,ns,0.791231769,Gm49859,Gm49859_Intergenic_downstream,17,62369433,62369482,62369481,62369482,50,-,ACTCAGACTTACACCCTCTAATTCTCTCTGCAGCTAATTTCTTATGTTCG,Distal Intergenic,17,61872375,61872654,280,1,Gm49859-201,497107,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1463,cg12907232,0.00000777,0.00000627,1.239431563,0.21612321,gain,ns,0.00000986,0.0000107,0.925423196,0.355465654,pos,ns,-0.001221538,0.003121915,-0.391278581,0.695860128,neg,ns,0.157478048,-0.0000212,0.000107362,-0.197378982,0.843660329,neg,ns,0.842500776,Usp9x,Usp9x_fiveUTR,X,13094044,13094093,13094092,13094093,50,-,AAGCAGACAAAATTGCAAAGATCTGCCCTGTGTCGAGTATGACAGCCACG,5' UTR,20,13071498,13123449,51952,1,Usp9x-206,22546,Usp9x-206;Usp9x-204;Usp9x-201,Usp9x;Usp9x;Usp9x,0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,10,22284,ENSMUSG00000031010,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5469,cg24827659,-0.000133591,0.0000169,-7.906878213,4.68E-14,loss,yes,0.0000266,0.0000287,0.925390222,0.355482773,pos,ns,-0.013245927,0.008409056,-1.575197923,0.116230715,neg,ns,0.934679089,0.0000989,0.000289187,0.341939427,0.732628169,pos,ns,0.806756645,Lipk,Lipk_threeUTR,19,34021606,34021655,34021654,34021655,50,+,CCTGCCCAACAACAGTTTGGCTTTCCTTCTGGCAGATAGTGGTTATGACG,3' UTR,19,34008290,34047797,39508,1,Lipk-203,13316,Lipk-203;Lipk-201;Lipk-202,Lipk;Lipk;Lipk,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,240633,ENSMUSG00000024771,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24925,cg18924074,0.0000671,0.0000113,5.94234289,7.55E-09,gain,yes,-0.0000178,0.0000192,-0.925341078,0.355508286,neg,ns,0.022382934,0.005623138,3.980505796,0.0000857,pos,ns,4.066974666,-0.000610865,0.000193379,-3.158896762,0.001739807,neg,ns,0.381479486,Stk35,Stk35_Exon,2,129810775,129810824,129810775,129810776,50,-,CGAGGCAAAGAGGGCAATCAAGACAACAAAAATGTGAATGTGAATAAGTA,"Exon (Stk35-201/Stk35, exon 3 of 4)",2,129800517,129828974,28458,1,Stk35-201,10258,Stk35-201;Stk35-202,Stk35;Stk35,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,67333,ENSMUSG00000037885,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5366,cg05960393,0.0000567,0.00000708,8.016146182,2.25E-14,gain,yes,-0.0000111,0.000012,-0.925334726,0.355511584,neg,ns,0.009654449,0.003523217,2.740236794,0.006495376,pos,ns,2.187395695,-0.0000683,0.000121163,-0.56335176,0.573602626,neg,ns,0.165350844,Lmx1b,Lmx1b_Intron,2,33616842,33616891,33616890,33616891,50,+,AGATAAAATGATTAAAAACTGCCAAGCGGGCCTGGCAATCACTCGCTCCG,"Intron (Lmx1b-201/Lmx1b, intron 2 of 7)",2,33560965,33640608,79644,2,Lmx1b-201,23717,Lmx1b-201;Lmx1b-203;Lmx1b-204;Lmx1b-202,Lmx1b;Lmx1b;Lmx1b;Lmx1b,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,26,16917,ENSMUSG00000038765,conserved gene and region,2,33616825,33617025,201,*,201,14,0.606965174,0.75624832,0.069651741,7.35E-09,CpGisland,TRUE,NA,NRS
14176,cg23627494,0.0000745,0.00000727,10.2515023,1.99E-21,gain,yes,-0.0000114,0.0000123,-0.925285014,0.355537394,neg,ns,0.012847414,0.003617147,3.551808245,0.000442039,pos,ns,3.354539417,-0.00022367,0.000124393,-1.798085454,0.073136322,neg,ns,0.085735523,Hoxd3,Hoxd3_fiveUTR,2,74732869,74732918,74732869,74732870,50,+,CGTGATTGGCGAAATAATTAATTCAGCACGTCCCTTAAGAAACACGGAGT,Promoter (<=1kb),2,74732913,74744214,11302,1,Hoxd3-205,0,Gm28230-201;Hoxd3-203;Hoxd3-205;Hoxd3-202;Hoxd4-203;Hoxd4-201;Hoxd4-202,Gm28230;Hoxd3;Hoxd3;Hoxd3;Hoxd4;Hoxd4;Hoxd4,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,8,24,15434,ENSMUSG00000079277,conserved gene but different region,2,74732626,74733055,430,*,430,35,0.590697674,0.938923202,0.081395349,1.14E-23,CpGisland,TRUE,U13,Hc-P
22630,cg16504105,-0.0000282,0.00000662,-4.266770852,0.0000264,loss,ns,-0.0000104,0.0000112,-0.925260133,0.355550313,neg,ns,-0.010648829,0.003295149,-3.231668537,0.001363067,neg,ns,2.865482773,0.000156533,0.00011332,1.381334962,0.168170811,pos,ns,0.891905165,Sox6,Sox6_threeUTR,7,115474281,115474330,115474329,115474330,50,-,CATAAAAATGACTCAAATCCGGCAACTGTGAGGCAAGCCCACACGAGTCG,3' UTR,7,115470872,116031047,560176,2,Sox6-210,556717,Sox6-210;Sox6-201;Sox6-202;Sox6-204;Sox6-205;Sox6-203;Sox6-212;Sox6-206,Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,57,20679,ENSMUSG00000051910,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18438,cg20267980,-0.00000732,0.00000608,-1.205133259,0.229071009,loss,ns,-0.00000955,0.0000103,-0.925028415,0.355670636,neg,ns,0.005026861,0.003024062,1.662287743,0.09746586,pos,ns,1.011147482,-0.000184727,0.000103997,-1.776265585,0.076669911,neg,ns,0.886494012,Cnot1,Cnot1_threeUTR,8,95728610,95728659,95728658,95728659,50,+,CACACCTTCTGCTGTGGCGTATGTGCCAGCATTCTTGCAATAAATATCCG,3' UTR,8,95719451,95807462,88012,2,Cnot1-202,78803,Cnot1-202;Cnot1-201;Cnot1-203;Cnot1-208;Cnot1-216;Cnot1-211;Cnot1-212;Cnot1-213,Cnot1;Cnot1;Cnot1;Cnot1;Cnot1;Cnot1;Cnot1;Cnot1,0;0;0;0;0;0;0;4077,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,8,24,234594,ENSMUSG00000036550,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7268,cg18653539,-0.00000789,0.00000551,-1.432983661,0.152870199,loss,ns,-0.00000865,0.00000936,-0.925014507,0.355677859,neg,ns,-0.005827219,0.002740742,-2.126146123,0.034281064,neg,ns,1.464945702,0.0000869,0.0000943,0.921792462,0.357353663,pos,ns,0.885600427,Gabrg2,Gabrg2_Exon,11,41912383,41912432,41912383,41912384,50,-,CGAGCATAGGAGTCCATTTTGGCAATGCGGATATGTATCCTCCCATGTCT,"Exon (Gabrg2-201/Gabrg2, exon 9 of 9)",11,41910203,42000857,90655,2,Gabrg2-201,88425,Gabrg2-201;Gabrg2-202;Gabrg2-204;Gabrg2-203,Gabrg2;Gabrg2;Gabrg2;Gabrg2,0;0;0;87924,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,14406,ENSMUSG00000020436,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24893,cg12593479,0.0000834,0.00000604,13.81127351,3.83E-34,gain,yes,-0.00000949,0.0000103,-0.924930477,0.355721501,neg,ns,0.010411316,0.003006047,3.463457542,0.000608313,pos,ns,3.215872612,-0.000341509,0.000103378,-3.303505554,0.001066609,neg,ns,0.09614013,Pitx2,Pitx2_Intergenic_downstream,3,129221718,129221767,129221718,129221719,50,+,CGATTTTTGCTGCATGTCAACACTTATTACCGGTGAGTGTGAGGGTATTT,Distal Intergenic,3,129214275,129216624,2350,1,Pitx2-206,7443,Pitx2-207;Pitx2-201;Pitx2-203;Pitx2-204;Pitx2-208;Pitx2-202,Pitx2;Pitx2;Pitx2;Pitx2;Pitx2;Pitx2,0;0;0;0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,24,18741,ENSMUSG00000028023,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
24947,cg24810208,-0.00000425,0.00000218,-1.94878841,0.052222566,loss,ns,-0.00000343,0.00000371,-0.924921512,0.355726157,neg,ns,-0.000699877,0.001086059,-0.644419016,0.519780298,neg,ns,0.284180186,-0.000043,0.0000373,-1.150107889,0.250985885,neg,ns,0.960751615,Hcrtr1,Hcrtr1_Exon,4,130137224,130137273,130137272,130137273,50,+,GACAGGTTGACAATGAAGTAGTTGGTGACTGTCCTCATGTGGTGGTTCCG,"Exon (Hcrtr1-203/Hcrtr1, exon 4 of 9)",4,130130217,130138551,8335,2,Hcrtr1-203,1278,Hcrtr1-203;Hcrtr1-201;Hcrtr1-202;Hcrtr1-204,Hcrtr1;Hcrtr1;Hcrtr1;Hcrtr1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,230777,ENSMUSG00000028778,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12383,cg24855781,0.0000298,0.00000674,4.420784501,0.0000136,gain,ns,0.0000106,0.0000115,0.924911572,0.355731319,pos,ns,0.00159194,0.003356125,0.474338655,0.635592373,pos,ns,0.196821323,-0.000214046,0.000115417,-1.854550121,0.064609955,neg,ns,0.078327639,Ctnna3,Ctnna3_Exon,10,64087842,64087891,64087890,64087891,50,+,TCATACCTCACACTCCCTGGAGCCCGATTTGTTATAGGTGCAGGGTCCCG,"Exon (Lrrtm3-201/Lrrtm3, exon 2 of 3)",10,63430098,65002965,1572868,1,Ctnna3-203,657744,Ctnna3-203;Ctnna3-202;Ctnna3-201;Lrrtm3-201;Lrrtm3-202;Lrrtm3-204;Lrrtm3-203,Ctnna3;Ctnna3;Ctnna3;Lrrtm3;Lrrtm3;Lrrtm3;Lrrtm3,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,11,216033,ENSMUSG00000060843,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13086,cg06783288,-0.0000152,0.00000658,-2.304292756,0.021867064,loss,ns,0.0000103,0.0000112,0.924902414,0.355736076,pos,ns,0.008685714,0.00327599,2.651324781,0.00842973,pos,ns,2.074186318,-0.000236147,0.000112661,-2.096082697,0.036885373,neg,ns,0.86826773,Rora,Rora_threeUTR,9,69379712,69379761,69379760,69379761,50,-,CGCATGTGCACCAGAAACACAAGTTTAACTGAGAAGGCTTGGAAGGTACG,3' UTR,9,68653786,69388246,734461,1,Rora-201,725926,Rora-201;Rora-202,Rora;Rora,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,19,19883,ENSMUSG00000032238,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7942,cg12960286,-0.0000163,0.0000076,-2.143550885,0.032846742,loss,ns,0.0000119,0.0000129,0.924900634,0.355737001,pos,ns,0.005756923,0.003781607,1.522348356,0.128941204,pos,ns,0.88960828,-0.000245027,0.000130049,-1.884111327,0.060485534,neg,ns,0.5865455,Hif1an,Hif1an_Exon,19,44646791,44646840,44646791,44646792,50,+,CGGCTGCAATGGAAAGGAAGCGTGGATTTGCATATTGAATTAAAATTAAG,"Exon (Gm35460-201/Gm35460-201, exon 7 of 7)",19,44562850,44576274,13425,1,Hif1an-201,83941,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,31,319594,ENSMUSG00000036450,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19319,cg18901929,-0.00000202,0.000000994,-2.033302584,0.042873529,loss,ns,-0.00000156,0.00000169,-0.92488049,0.355747463,neg,ns,0.00024063,0.000494478,0.486635096,0.626860813,pos,ns,0.202828879,-0.0000157,0.000017,-0.926179581,0.355073126,neg,ns,0.967600385,Dock7,Dock7_Exon,4,98992385,98992434,98992385,98992386,50,+,CGTCCCGTTAATGTTTGTAAGAAACTTGACGTCTCTGTGTGCGAAGACAT,"Exon (Dock7-201/Dock7, exon 24 of 49)",4,98936671,99120915,184245,2,Dock7-201,128481,Dock7-201;Dock7-205;Dock7-204;Dock7-202;Dock7-214;Dock7-211;Dock7-206;Dock7-216,Dock7;Dock7;Dock7;Dock7;Dock7;Dock7;Dock7;Dock7,0;0;0;0;0;0;0;2524,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,9,67299,ENSMUSG00000028556,conserved gene but different region,4,98992385,98992567,183,*,183,12,0.464480874,1.22956327,0.065573771,0.000000226,CpGisland,TRUE,NA,NRS
18423,cg11368438,-0.00000278,0.00000075,-3.704541472,0.000250691,loss,ns,0.00000118,0.00000127,0.924812977,0.35578253,pos,ns,-0.000202136,0.000373443,-0.541277412,0.58870515,neg,ns,0.230102165,0.00000227,0.0000128,0.176480383,0.860031796,pos,ns,0.975944512,U2surp,U2surp_threeUTR,9,95482177,95482226,95482225,95482226,50,+,CAGAAAACCATTGCATCTCCAATATCATTTTTCCTTGGAGTTAATCCCCG,3' UTR,9,95456898,95511894,54997,2,U2surp-202,29668,U2surp-202;U2surp-201;U2surp-208;U2surp-209;U2surp-205,U2surp;U2surp;U2surp;U2surp;U2surp,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,6,67958,ENSMUSG00000032407,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1746,cg06582962,0.0000126,0.00000556,2.271145859,0.023823617,gain,ns,-0.00000874,0.00000945,-0.924801144,0.355788676,neg,ns,0.013206514,0.002767368,4.772228324,0.00000281,pos,ns,5.551097593,-0.000432239,0.0000952,-4.54178155,0.000008,neg,ns,0.158127304,Gm49536,Gm49536_Intergenic_downstream,16,15053054,15053103,15053054,15053055,50,+,CGGGAGTGCTGCTTCATGCCAAGTTTATAAACAGAGCAGTGTTTCCAGAT,Distal Intergenic,16,15000322,15000489,168,1,Gm49536-201,52732,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23810,cg02779952,-0.00000224,0.0000036,-0.620408946,0.535444402,loss,ns,0.00000566,0.00000612,0.924794719,0.355792014,pos,ns,0.00333186,0.001793442,1.85780205,0.064145117,pos,ns,1.192836396,-0.000194637,0.0000617,-3.155773898,0.001757948,neg,ns,0.91934665,Gm42927,Gm42927_Intergenic_downstream,3,120429487,120429536,120429535,120429536,50,-,ATTATTATGGAATGTCTGAGGTATAATTTCCCCTGCGGTTTTGTTAGGCG,Distal Intergenic,3,120735721,120739561,3841,2,Gm42927-201,310074,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,7,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16437,cg25229850,-0.00000191,0.00000164,-1.163491178,0.24552503,loss,ns,-0.00000257,0.00000278,-0.924733903,0.355823605,neg,ns,-0.001366556,0.000815431,-1.675870081,0.094771873,neg,ns,1.023320537,0.0000183,0.000028,0.653559617,0.513880036,pos,ns,0.962172118,Cntln,Cntln_Exon,4,84996422,84996471,84996470,84996471,50,+,CTAGTTCAACCATGTCCTTGTTTTATTCTCGAGGAACCACCTGTGAAACG,"Exon (Cntln-201/Cntln, exon 10 of 26)",4,84884309,85131921,247613,1,Cntln-201,112113,Cntln-201;Cntln-204,Cntln;Cntln,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,25,338349,ENSMUSG00000038070,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11115,cg24614755,-0.00000422,0.00000353,-1.196606696,0.232374227,loss,ns,0.00000554,0.00000599,0.924714344,0.355833765,pos,ns,-0.003222495,0.001755927,-1.835209977,0.067432519,neg,ns,1.171130615,0.0000655,0.0000604,1.084815387,0.278846349,pos,ns,0.92487614,Lingo1,Lingo1_Intron,9,56643109,56643158,56643157,56643158,50,+,AAGCAGGTGTCATGTCGCACCCATAAACAGCTTGTTAGCTAAGACTAACG,"Intron (Lingo1-201/Lingo1, intron 3 of 3)",9,56618475,56685253,66779,2,Lingo1-201,42095,Lingo1-201;Lingo1-206;Lingo1-202,Lingo1;Lingo1;Lingo1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,25,235402,ENSMUSG00000049556,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19440,cg03376395,-0.0000422,0.00000663,-6.371093632,6.78E-10,loss,yes,0.0000104,0.0000113,0.924536035,0.3559264,pos,ns,0.002221938,0.003299941,0.673326545,0.501241233,pos,ns,0.29995321,-0.000363913,0.000113485,-3.206712263,0.001482793,neg,ns,0.807971899,Prpf40b,Prpf40b_Exon,15,99315194,99315243,99315194,99315195,50,+,CGTGAGCGTTTTGTGTGTGACTCAGCCTTTGAGCAGATCACCCTGGAGTC,"Exon (Prpf40b-214/Prpf40b, exon 19 of 24)",15,99295239,99317018,21780,1,Prpf40b-214,19955,Fmnl3-201;Fmnl3-203;Fmnl3-202;Prpf40b-214;Prpf40b-206;Prpf40b-209;Prpf40b-212;Prpf40b-208;Prpf40b-201;Prpf40b-202;Prpf40b-210;Prpf40b-215;Prpf40b-203;Prpf40b-207;Prpf40b-213;Prpf40b-204,Fmnl3;Fmnl3;Fmnl3;Prpf40b;Prpf40b;Prpf40b;Prpf40b;Prpf40b;Prpf40b;Prpf40b;Prpf40b;Prpf40b;Prpf40b;Prpf40b;Prpf40b;Prpf40b,55206;55206;55239;0;0;0;0;0;0;0;0;0;0;0;0;-297,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,10,54614,ENSMUSG00000023007,conserved gene but different region,15,99315183,99315264,82,*,82,8,0.609756098,1.051282051,0.097560976,0.00000265,CpGisland,TRUE,NA,NRS
21695,cg09998451,-0.0000161,0.0000101,-1.601424242,0.110301479,loss,ns,-0.0000158,0.0000171,-0.924394993,0.355999685,neg,ns,-0.006833007,0.005006563,-1.364809762,0.17330262,neg,ns,0.761194872,0.0000854,0.000172175,0.49599315,0.620250706,pos,ns,0.477712239,Rab3b,Rab3b_Exon,4,108890428,108890477,108890428,108890429,50,+,CGCTATGCTGACGACTCGTTCACGCCTGCCTTCGTCAGCACCGTGGGCAT,"Exon (Rab3b-202/Rab3b, exon 2 of 5)",4,108879063,108943324,64262,1,Rab3b-202,11365,Rab3b-202;Rab3b-203;Rab3b-201,Rab3b;Rab3b;Rab3b,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,69908,ENSMUSG00000003411,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8446,cg00339654,0.0000206,0.00000562,3.657087474,0.000299615,gain,ns,-0.00000883,0.00000955,-0.924323264,0.356036959,neg,ns,0.009808294,0.002798312,3.505075695,0.00052379,pos,ns,3.280842474,-0.00020868,0.0000962,-2.16847437,0.030882863,neg,ns,0.12150863,Tlx1,Tlx1_fiveUTR,19,45151459,45151508,45151507,45151508,50,+,AGTAACCGCAGATACACAAAGGACAGGTTCACAGGTGAGTCCGGCCCGCG,Promoter (<=1kb),19,45151469,45156399,4931,1,Tlx1-202,0,Tlx1-201;Tlx1-202,Tlx1;Tlx1,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,7,21908,ENSMUSG00000025215,conserved gene but different region,19,45150790,45151532,743,*,743,80,0.728129206,0.812687996,0.107671602,1.42E-63,CpGisland,TRUE,U13,Hc-P
8616,cg09781932,0.000131715,0.0000253,5.19642623,0.000000369,gain,yes,0.0000398,0.0000431,0.924218117,0.356091602,pos,ns,0.037275984,0.012615621,2.954748303,0.003368993,pos,ns,2.472499869,-0.001630506,0.00043385,-3.758223865,0.000204448,neg,ns,0.606557979,Dscaml1,Dscaml1_Exon,9,45447888,45447937,45447888,45447889,50,+,CGCCTTCAATAGCTTTATCCACGACAATGACTACTTCTGCACCGCGGAGA,"Exon (Dscaml1-208/Dscaml1, exon 4 of 6)",9,45426628,45571224,144597,1,Dscaml1-208,21260,Dscaml1-208;Dscaml1-209;Dscaml1-202;Dscaml1-206;Dscaml1-211;Dscaml1-201;Dscaml1-210,Dscaml1;Dscaml1;Dscaml1;Dscaml1;Dscaml1;Dscaml1;Dscaml1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,32,114873,ENSMUSG00000032087,conserved gene but different region,9,45447761,45447971,211,*,211,15,0.592417062,0.844,0.071090047,1.39E-09,CpGisland,TRUE,U11,Tr-P
7150,cg04368876,-0.000000638,0.00000278,-0.229154093,0.81890026,loss,ns,-0.00000437,0.00000473,-0.923993895,0.356208146,neg,ns,-0.001180972,0.001384742,-0.852846072,0.394403111,neg,ns,0.404059668,-0.0000164,0.0000476,-0.345148536,0.730216775,neg,ns,0.061010735,Lcor,Lcor_Intron,19,41483910,41483959,41483958,41483959,50,+,AATTATGCAAATCCTGCTTTCTGGTGTCCATTCAGCGGCAATTTCATGCG,"Intron (Lcor-201/Lcor, intron 2 of 7)",19,41482637,41562261,79625,1,Lcor-201,1273,Lcor-201;Lcor-204;Lcor-206,Lcor;Lcor;Lcor,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,25,212391,ENSMUSG00000025019,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
12771,cg05994794,0.0000184,0.00000463,3.981568508,0.0000853,gain,ns,-0.00000726,0.00000786,-0.923980788,0.356214959,neg,ns,-0.001274365,0.002302335,-0.553509758,0.580313383,neg,ns,0.236337414,0.000137911,0.0000792,1.741805355,0.082534382,pos,ns,0.097776609,Phox2b,Phox2b_Promoter,5,67100496,67100545,67100544,67100545,50,-,CAGTAATTAAAGTAACAAACTCATAAAGTCTTTATAGGGGCATTTAGGCG,Promoter (1-2kb),5,67094399,67099301,4903,2,Phox2b-201,-1244,Phox2b-201;Phox2b-202,Phox2b;Phox2b,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,13,28,18935,ENSMUSG00000012520,conserved gene and region,5,67100544,67100778,235,*,235,14,0.565957447,0.746031746,0.059574468,5.38E-08,CpGisland,TRUE,U13,Hc-P
4510,cg17292091,-0.000000221,0.00000214,-0.1029714,0.918052249,loss,ns,-0.00000336,0.00000364,-0.923844679,0.356285717,neg,ns,-0.000769023,0.001066527,-0.721053551,0.471419987,neg,ns,0.326592008,-0.0000101,0.0000367,-0.274653656,0.783765285,neg,ns,0.893965409,Echdc1,Echdc1_threeUTR,10,29347350,29347399,29347398,29347399,50,+,GCTACTCCCTTCTTTGGTATATCTATTATATCTCGCTTAATCTTCCTGCG,3' UTR,10,29313500,29347469,33970,1,Echdc1-201,33850,Echdc1-202;Echdc1-204;Echdc1-201;Rnf146-202;Rnf146-201;Rnf146-203;Rnf146-205;Rnf146-204;Rnf146-206,Echdc1;Echdc1;Echdc1;Rnf146;Rnf146;Rnf146;Rnf146;Rnf146;Rnf146,34184;34069;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,2,52665,ENSMUSG00000019883,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1460,cg11536517,-0.0000172,0.00000489,-3.509810418,0.000514904,loss,ns,-0.00000767,0.00000831,-0.923836935,0.356289743,neg,ns,-0.007838326,0.002433534,-3.220964797,0.001413276,neg,ns,2.849773042,0.0000566,0.0000837,0.676088915,0.499488268,pos,ns,0.803540644,Rpl21-ps2,Rpl21-ps2_Intergenic_downstream,12,13086156,13086205,13086156,13086157,50,+,CGGAAACAAATTAAAGGCACATCTGTTGGGAGGCCATTTCCAGCCGTGGC,Distal Intergenic,12,13149680,13150160,481,2,Rpl21-ps2-201,63955,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,4,628449,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5008,cg23572376,0.00000868,0.00000271,3.207565099,0.001478546,gain,ns,-0.00000425,0.0000046,-0.923832275,0.356292165,neg,ns,0.000128468,0.001346389,0.095416645,0.924045544,pos,ns,0.034306623,-0.0000532,0.0000463,-1.149042441,0.251424257,neg,ns,0.024422332,Foxc1,Foxc1_fiveUTR,13,31806603,31806652,31806603,31806604,50,-,CGTAAAAAAGTCCTCGCCTGGGTGACGGATGCTCAAAAGTTCAGAAGTTT,Promoter (<=1kb),13,31806633,31812476,5844,1,Foxc1-201,0,Foxc1-201,Foxc1,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,7,17300,ENSMUSG00000050295,conserved gene but different region,13,31806142,31806629,488,*,488,46,0.678278689,0.861462891,0.094262295,6.01E-34,CpGisland,TRUE,U3,Pr-B
3621,cg12675684,-0.0000057,0.00000796,-0.715781413,0.474665128,loss,ns,0.0000125,0.0000135,0.923753673,0.356333032,pos,ns,0.030209552,0.003960934,7.626876436,2.97E-13,pos,yes,12.52684209,-0.000685721,0.000136216,-5.034061141,0.000000816,neg,yes,0.821955845,BC005537,BC005537_Exon,13,24809895,24809944,24809943,24809944,50,-,GAGTTTCATCATGGTGACTATGAAAAACAGTTTCTGCATGTACTGAGCCG,"Exon (BC005537-201/BC005537, exon 4 of 5)",13,24801657,24816197,14541,1,BC005537-201,8238,BC005537-201;BC005537-202,BC005537;BC005537,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,79555,ENSMUSG00000019132,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23229,cg03574244,-0.000000541,0.00000334,-0.161968401,0.871436254,loss,ns,0.00000524,0.00000568,0.923721876,0.356349565,pos,ns,0.000184759,0.001662824,0.11111186,0.911599547,pos,ns,0.040195899,-0.0000169,0.0000572,-0.295356647,0.767919171,neg,ns,0.525051724,Eri3,Eri3_Intron,4,117567122,117567171,117567170,117567171,50,+,ATAGACCCGTTAGTTTACTGTGATTCCAGAGAAGATACTTGACCTGATCG,"Intron (Eri3-201/Eri3, intron 3 of 8)",4,117550365,117674297,123933,1,Eri3-201,16757,Eri3-201;Eri3-205;Eri3-206,Eri3;Eri3;Eri3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,82,97,140546,ENSMUSG00000033423,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4163,cg08477187,0.000000617,0.00000144,0.427369079,0.669407221,gain,ns,0.00000226,0.00000245,0.923635429,0.356394515,pos,ns,0.001264475,0.000718241,1.760516167,0.079306378,pos,ns,1.100691887,0.0000032,0.0000247,0.129728736,0.89686518,pos,ns,0.9596512,Jam3,Jam3_Exon,9,27100122,27100171,27100122,27100123,50,-,CGTCATTGGAAGCAATGCAGTAGTACTGCCCAGAGTCGTCCTTGTGAACA,"Exon (Gm48796-201/Gm48796-201, exon 1 of 2)",9,27097384,27155393,58010,2,Jam3-201,55222,Jam3-201;Jam3-205;Jam3-203;Jam3-202;Ncapd3-201;Ncapd3-202;Ncapd3-205;Ncapd3-204,Jam3;Jam3;Jam3;Jam3;Ncapd3;Ncapd3;Ncapd3;Ncapd3,0;0;0;55247;69947;69947;69473;25789,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,83964,ENSMUSG00000031990,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26919,cg21542675,-0.0000458,0.0000125,-3.675039803,0.000280135,loss,ns,-0.0000196,0.0000212,-0.923629335,0.356397684,neg,ns,-0.024507157,0.006204944,-3.949617737,0.0000969,neg,ns,4.013466185,0.000774549,0.000213388,3.629774639,0.000331713,pos,ns,0.801603829,Actrt2,Actrt2_Intergenic_upstream,4,154703964,154704013,154704012,154704013,50,-,TGGAGTTTCCAAATAATAAAATATCTTTGATTCCCTGCTGATGTCAGACG,Distal Intergenic,4,154666433,154667867,1435,2,Actrt2-201,-36146,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,3,73353,ENSMUSG00000051276,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14187,cg21407702,0.000113936,0.00000961,11.86051494,5.23E-27,gain,yes,0.0000151,0.0000163,0.923616152,0.356404539,pos,ns,-0.004580431,0.004781164,-0.958016036,0.338801218,neg,ns,0.470055037,0.000033,0.000164424,0.200786427,0.840997245,pos,ns,0.206236349,Gm28230,Gm28230_Intron,2,74734697,74734746,74734745,74734746,50,+,TATGCTCCGATTGAAGAAGGCTTAGATCCTTTCCTGGAGACAAATTCCCG,"Intron (Hoxd3-203/Hoxd3, intron 1 of 2)",2,74726728,74747918,21191,1,Gm28230-201,7969,Gm28230-201;Hoxd3-203;Hoxd3-205;Hoxd3-202;Hoxd3-201,Gm28230;Hoxd3;Hoxd3;Hoxd3;Hoxd3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,23,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
22252,cg25996664,-0.0000144,0.00000478,-3.005910691,0.002864218,loss,ns,-0.0000075,0.00000812,-0.92350556,0.356462051,neg,ns,0.0010158,0.002378828,0.427016939,0.66966341,pos,ns,0.17414343,-0.000201932,0.0000818,-2.468379159,0.014111953,neg,ns,0.9240831,Kcnc2,Kcnc2_threeUTR,10,112464031,112464080,112464031,112464032,50,-,CGAGGCCAGATCTCTTACTTAATGACTTGGGGAAGGCACAAAACATGAGA,3' UTR,10,112271121,112466304,195184,1,Kcnc2-201,192910,Kcnc2-204;Kcnc2-201;Kcnc2-202;Kcnc2-205;Kcnc2-203,Kcnc2;Kcnc2;Kcnc2;Kcnc2;Kcnc2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,2,268345,ENSMUSG00000035681,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27559,cg22572197,0.00000284,0.00000477,0.595250281,0.552110456,gain,ns,-0.00000748,0.0000081,-0.923497036,0.356466483,neg,ns,0.001387075,0.002374264,0.584212778,0.559502047,pos,ns,0.25219832,-0.0000986,0.0000817,-1.20775793,0.228060996,neg,ns,0.914064182,Tshz2,Tshz2_threeUTR,2,169912957,169913006,169913005,169913006,50,-,TGGCTGAGAAATCAAATTATGCACATAAATATGCTGGCATAGCACAGGCG,3' UTR,2,169633013,169913093,280081,1,Tshz2-202,279944,Tshz2-202;Tshz2-203;Tshz2-205;Tshz2-204,Tshz2;Tshz2;Tshz2;Tshz2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,8,30,228911,ENSMUSG00000047907,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4501,cg18172081,0.0000054,0.00000687,0.785863347,0.432547803,gain,ns,-0.0000108,0.0000117,-0.923477724,0.356476527,neg,ns,-0.006172625,0.003421516,-1.804061232,0.072192286,neg,ns,1.141509208,-0.000138899,0.000117666,-1.180450834,0.238725914,neg,ns,0.879273622,Cacna2d3,Cacna2d3_Intron,14,29276006,29276055,29276054,29276055,50,+,GATTTATCACAGGGGGCATAAATCATAAATGCATTTAGTTGTCTTCATCG,"Intron (Cacna2d3-201/Cacna2d3, intron 11 of 37)",14,28904943,29721864,816922,2,Cacna2d3-201,445809,Cacna2d3-201;Cacna2d3-205;Cacna2d3-206;Cacna2d3-209,Cacna2d3;Cacna2d3;Cacna2d3;Cacna2d3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,4,12294,ENSMUSG00000021991,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1699,cg19523029,-0.0000085,0.00000351,-2.420759769,0.016062339,loss,ns,-0.00000551,0.00000597,-0.923469112,0.356481006,neg,ns,-0.001413289,0.001748338,-0.808361259,0.419502548,neg,ns,0.377265397,-0.0000921,0.0000601,-1.531630507,0.126633466,neg,ns,0.041482576,Tle4,Tle4_fiveUTR,19,14598046,14598095,14598046,14598047,50,+,CGCTCTGTGTAGGTGACTTCTTTGACCAAATTTAGCAGCAGCTAATCATT,Promoter (<=1kb),19,14448150,14598051,149902,2,Tle4-201,0,Tle4-201;Tle4-202;Tle4-203,Tle4;Tle4;Tle4,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,29,21888,ENSMUSG00000024642,conserved gene and region,19,14597914,14598047,134,*,134,11,0.5,1.327927928,0.082089552,8.77E-08,CpGisland,TRUE,U1,Pr-A
2297,cg07539423,0.0000303,0.0000114,2.650133041,0.00845885,gain,ns,0.0000179,0.0000194,0.923362843,0.356536276,pos,ns,-0.002488541,0.005689106,-0.437422222,0.66210975,neg,ns,0.179070017,0.00040024,0.000195648,2.045716846,0.041627909,pos,ns,0.205568171,Nova2,Nova2_threeUTR,7,18964643,18964692,18964643,18964644,50,+,CGCGATAAACGCCATCTCAGCATCTGTGTCTAATGTTGTCTTTTTTGCTT,3' UTR,7,18925888,18965319,39432,1,Nova2-201,38755,Nova2-201;Nova2-202,Nova2;Nova2,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,5,384569,ENSMUSG00000030411,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
19574,cg22885558,0.0000355,0.00000396,8.956918885,3.17E-17,gain,yes,-0.00000621,0.00000673,-0.923314601,0.356561369,neg,ns,0.003787435,0.001971658,1.920939271,0.055656317,pos,ns,1.254485533,-0.000111586,0.0000678,-1.645682121,0.10084269,neg,ns,0.078680984,Sox14,Sox14_Exon,9,99875042,99875091,99875090,99875091,50,-,GGGGCTGCAGGGTGGAGGCAGACCAGGCGGTACAGTTACAGGGCACCACG,"Exon (Sox14-201/Sox14, exon 1 of 1)",9,99874106,99876170,2065,2,Sox14-201,1079,Sox14-201;Sox14-202,Sox14;Sox14,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,18,20669,ENSMUSG00000053747,conserved gene and region,9,99875036,99875212,177,*,177,15,0.694915254,0.771802326,0.084745763,1.11E-10,CpGisland,TRUE,U13,Hc-P
22620,cg25269267,-7.01E-08,0.00000149,-0.047029099,0.962520318,loss,ns,-0.00000234,0.00000253,-0.923264568,0.356587394,neg,ns,-0.000246209,0.000742157,-0.331747795,0.740303879,neg,ns,0.130589975,0.000006,0.0000255,0.235239892,0.814177863,pos,ns,0.989496327,Msi1,Msi1_Exon,5,115447117,115447166,115447117,115447118,50,+,CGTTTCATTTTAGAATTCCGTGTAGAGCGGACCCCTCTCCCGAGCGCCCC,"Exon (Msi1-208/Msi1, exon 11 of 15)",5,115429599,115455698,26100,1,Msi1-208,17518,Msi1-208;Msi1-209;Msi1-201;Msi1-203;Msi1-205;Msi1-207;Msi1-204;Msi1-202,Msi1;Msi1;Msi1;Msi1;Msi1;Msi1;Msi1;Msi1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,14,17690,ENSMUSG00000054256,conserved gene but different region,5,115447002,115447281,280,*,280,18,0.646428571,0.622222222,0.064285714,1.15E-10,CpGisland,TRUE,NA,NRS
23737,cg19333799,-0.0000854,0.0000126,-6.785687618,5.87E-11,loss,yes,0.0000197,0.0000214,0.923125308,0.356659838,pos,ns,-0.019004509,0.006262193,-3.034800689,0.002610818,neg,ns,2.58322344,0.000372363,0.000215356,1.729055587,0.084794694,pos,ns,0.748356414,Bahcc1,Bahcc1_Intron,11,120251366,120251415,120251414,120251415,50,+,ACCAGACTTATATCCGATTTTCCTTTTCTTTTATTAGTTCTGGGCTGTCG,"Intron (Bahcc1-203/Bahcc1, intron 2 of 27)",11,120232947,120292282,59336,1,Bahcc1-203,18419,Bahcc1-203;Bahcc1-201;Bahcc1-202,Bahcc1;Bahcc1;Bahcc1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,11,268515,ENSMUSG00000039741,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
14521,cg16396219,-0.00000454,0.00000271,-1.672965015,0.09534298,loss,ns,0.00000425,0.00000461,0.922979179,0.356735865,pos,ns,-0.000456302,0.001350324,-0.337920494,0.735651823,neg,ns,0.133327684,-0.0000344,0.0000464,-0.741736424,0.458808613,neg,ns,0.922420026,Plec,Plec_Exon,15,76178243,76178292,76178291,76178292,50,+,TCGTCCTGGAAGAGCTGCTCCAGCTTGGCCTTCTCCTGCTCGATGAAGCG,"Exon (Plec-202/Plec, exon 33 of 33)",15,76170974,76199835,28862,2,Plec-202,21543,Plec-202;Plec-205;Plec-208;Plec-203;Plec-209;Plec-206;Plec-201;Plec-204;Plec-217;Plec-218;Plec-215;Plec-207;Plec-221;Plec-211,Plec;Plec;Plec;Plec;Plec;Plec;Plec;Plec;Plec;Plec;Plec;Plec;Plec;Plec,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,18810,ENSMUSG00000022565,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16351,cg02434126,-0.00000465,0.00000919,-0.505542399,0.613537182,loss,ns,-0.0000144,0.0000156,-0.922949119,0.356751506,neg,ns,-0.000812812,0.004573839,-0.177708854,0.859067694,neg,ns,0.065972613,-0.0000626,0.000157294,-0.397668939,0.691147928,neg,ns,0.622032716,Mrm1,Mrm1_Intron,11,84766330,84766379,84766330,84766331,50,-,CGTGATGTCTGCTATTAAAGATGATTTGCAGTTGAAAACTACAACATACA,"Intron (Gm11431-201/Gm11431-201, intron 2 of 2)",11,84814743,84815390,648,2,Mrm1-203,49060,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,42,217038,ENSMUSG00000018405,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11595,cg26395444,0.000000212,0.000000819,0.258809408,0.79595406,gain,ns,0.00000128,0.00000139,0.922854053,0.356800973,pos,ns,0.00066974,0.000407794,1.642347779,0.101531908,pos,ns,0.993397454,-0.00000358,0.000014,-0.255023408,0.798874124,neg,ns,0.975415397,Arih1,Arih1_threeUTR,9,59392629,59392678,59392677,59392678,50,-,TTAAACATTATGCAAACACGTGCCACGCTTGCTTTGTCCATGCATATGCG,3' UTR,9,59388258,59486614,98357,2,Arih1-207,93936,Arih1-207;Arih1-201;Arih1-202;Arih1-206;Arih1-203,Arih1;Arih1;Arih1;Arih1;Arih1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,13,23806,ENSMUSG00000025234,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6292,cg27493848,0.0000079,0.00000625,1.263862266,0.207229011,gain,ns,0.0000098,0.0000106,0.922728987,0.356866057,pos,ns,-0.002520334,0.003110943,-0.810151195,0.418474744,neg,ns,0.378330748,0.000140255,0.000106985,1.310972802,0.190837237,pos,ns,0.01359911,Nrn1,Nrn1_fiveUTR,13,36734302,36734351,36734350,36734351,50,-,TCAAACCATTTGCGACCGCAGACCTTTAAATAGTTAGTTTAGAGAACGCG,Promoter (<=1kb),13,36725625,36734477,8853,2,Nrn1-201,126,Nrn1-204;Nrn1-201;Nrn1-203;Nrn1-202;Nrn1-205,Nrn1;Nrn1;Nrn1;Nrn1;Nrn1,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,8,9,68404,ENSMUSG00000039114,conserved gene and region,13,36734112,36734395,284,*,284,18,0.538732394,0.874444064,0.063380282,1.46E-10,CpGisland,TRUE,U1,Pr-A
26057,cg24012074,-0.000000177,0.00000439,-0.04028066,0.967895302,loss,ns,0.00000688,0.00000746,0.922692885,0.356884846,pos,ns,0.004934874,0.002184278,2.259270004,0.024560846,pos,ns,1.609756675,-0.000220534,0.0000751,-2.935866645,0.003574981,neg,ns,0.917970847,Gm2505,Gm2505_Intergenic_upstream,3,143465770,143465819,143465770,143465771,50,-,CGCACACATAGGTATTGCCCCATTTATCAGACATGAGAGCTAATTACCTC,Distal Intergenic,3,143872995,143873819,825,1,Gm2505-201,-407225,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,37,100039938,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18142,cg14741527,0.0000325,0.00000281,11.57418104,5.44E-26,gain,yes,-0.0000044,0.00000477,-0.922676124,0.35689357,neg,ns,0.002647808,0.001398363,1.893505824,0.059221634,pos,ns,1.227519611,0.0000206,0.0000481,0.427780003,0.669108313,pos,ns,0.076147693,Hsd17b12,Hsd17b12_Exon,2,94241371,94241420,94241371,94241372,50,-,CGCAAATGCTTTTTGGGGTAAGGGCTTCCGGCTATTGAGTTATGTACAGC,"Exon (Mir129b-201/Mir129b-201, exon 1 of 1)",2,94032689,94157964,125276,2,Hsd17b12-201,-83456,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,19,56348,ENSMUSG00000027195,mapped to different genes,2,94241115,94241769,655,*,655,63,0.630534351,0.978307255,0.096183206,7.48E-47,CpGisland,TRUE,U3,Pr-B
15400,cg00393155,-0.0000107,0.00000272,-3.952434599,0.0000959,loss,ns,0.00000426,0.00000462,0.922629888,0.356917634,pos,ns,-0.000823853,0.00135238,-0.609187158,0.542846575,neg,ns,0.265322898,-0.0000343,0.0000465,-0.737793005,0.461198351,neg,ns,0.963103078,Gria2,Gria2_Exon,3,80692262,80692311,80692310,80692311,50,-,TATTGTTATACTATTCCACCCACCTTAATGAGGATCCTTTAGGTGTTGCG,"Exon (Gria2-201/Gria2, exon 13 of 16)",3,80681450,80802835,121386,2,Gria2-201,110524,Gria2-201;Gria2-202;Gria2-203;Gria2-206,Gria2;Gria2;Gria2;Gria2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,19,14800,ENSMUSG00000033981,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18872,cg25338703,0.000129338,0.0000231,5.588118734,5.03E-08,gain,yes,-0.0000363,0.0000393,-0.922463403,0.357004292,neg,ns,0.043879725,0.01151959,3.809139613,0.000168129,pos,ns,3.774356216,-0.001438489,0.000396158,-3.631101479,0.000330082,neg,ns,0.450777867,Nfia,Nfia_Intron,4,97786788,97786837,97786836,97786837,50,+,TTGACCTTTTAGATAAAGTTAACCTTTGTTCATTAGTAGGCACTCAACCG,"Intron (Nfia-208/Nfia, intron 2 of 3)",4,97772734,98000466,227733,1,Nfia-208,14054,Nfia-208;Nfia-202;Nfia-203;Nfia-205;Nfia-201;Nfia-204,Nfia;Nfia;Nfia;Nfia;Nfia;Nfia,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,44,18027,ENSMUSG00000028565,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25398,cg01505662,0.00000822,0.00000472,1.741727881,0.082547967,gain,ns,-0.00000739,0.00000802,-0.922199816,0.357141521,neg,ns,-0.003319224,0.002348885,-1.413106225,0.158627755,neg,ns,0.799620821,0.000084,0.0000808,1.039915522,0.299189532,pos,ns,0.89615454,Gm9341,Gm9341_Intergenic_downstream,7,136209360,136209409,136209408,136209409,50,+,TCTCTTGATCTCTTACATATTAATACACTGCCTGCTGTTATTAAGCTCCG,Distal Intergenic,7,135952798,135953783,986,1,Gm9341-201,256562,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,27,28,668764,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
493,cg07355869,0.00000765,0.0000161,0.475265096,0.634932722,gain,ns,0.0000252,0.0000273,0.921874632,0.357310864,pos,ns,0.016761084,0.008009439,2.092666327,0.03719177,pos,ns,1.429553158,-0.000740722,0.000275444,-2.689194913,0.007550064,neg,ns,0.780870789,Celf2,Celf2_threeUTR,2,6547087,6547136,6547135,6547136,50,+,CAGTAAGGTTTGCTGTCGTTTTTGGAACGCTTCAGCTGCACCTTCAAGCG,3' UTR,2,6539694,7396000,856307,2,Celf2-201,848864,Celf2-201;Celf2-202;Celf2-204;Celf2-214;Celf2-206;Celf2-226;Celf2-223;Celf2-224;Celf2-221;Celf2-205;Celf2-211;Celf2-213;Celf2-225;Celf2-228;Celf2-216,Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,24,14007,ENSMUSG00000002107,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25583,cg17603740,-0.0000041,0.00000599,-0.684523237,0.494156257,loss,ns,-0.00000937,0.0000102,-0.921776442,0.357362008,neg,ns,0.000943616,0.00297888,0.316768847,0.751632215,pos,ns,0.123994614,-0.000114366,0.000102443,-1.116386289,0.265121385,neg,ns,0.865976938,Ebf3,Ebf3_Intron,7,137262721,137262770,137262721,137262722,50,+,CGAGTGTAAATTTAGAATAATTTGGCCTGAATGATCCTTACTAGAATAGA,"Intron (Ebf3-204/Ebf3, intron 6 of 15)",7,137193673,137314445,120773,2,Ebf3-204,51675,Ebf3-204;Ebf3-201;Ebf3-202;Ebf3-203;Ebf3-208;Ebf3-205,Ebf3;Ebf3;Ebf3;Ebf3;Ebf3;Ebf3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,62,84,13593,ENSMUSG00000010476,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3633,cg15504185,0.00000959,0.00000805,1.190470778,0.234772225,gain,ns,0.0000126,0.0000137,0.921739406,0.3573813,pos,ns,-0.004330006,0.004008136,-1.080304251,0.280846457,neg,ns,0.55153105,0.000206581,0.000137839,1.498708611,0.134966849,pos,ns,0.871780327,Gm47909,Gm47909_Intergenic_downstream,14,24842115,24842164,24842163,24842164,50,-,TACACTTTTCAACATGTCATGTAGAATTCTGTACTTGTTAGGGAAAATCG,Distal Intergenic,14,25089939,25090406,468,2,Gm47909-201,248291,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,13,17,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23479,cg25209900,-0.000000295,0.0000119,-0.024738562,0.980279413,loss,ns,0.0000187,0.0000203,0.921586548,0.35746093,pos,ns,0.013856385,0.005944898,2.330802788,0.020404857,pos,ns,1.690266441,-0.0000295,0.000204445,-0.144339905,0.885325859,neg,ns,0.22670139,Med13l,Med13l_Intron,5,118561974,118562023,118561974,118561975,50,+,CGAATTTGTTTAAATATTGAGCAAAGATTTGTAAACAGATGTAAGGCAAT,"Intron (Med13l-203/Med13l, intron 1 of 4)",5,118560679,118720114,159436,1,Med13l-203,1295,Med13l-203;Med13l-201;Med13l-202;Med13l-204,Med13l;Med13l;Med13l;Med13l,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,16,76199,ENSMUSG00000018076,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8289,cg25411330,0.0000114,0.0000056,2.040527361,0.042144815,gain,ns,-0.00000876,0.00000951,-0.921534467,0.357488064,neg,ns,-0.004361074,0.002785345,-1.565721413,0.118434045,neg,ns,0.926523439,0.0000609,0.0000958,0.635609568,0.525499853,pos,ns,0.820518526,Tsks,Tsks_Exon,7,44957606,44957655,44957606,44957607,50,-,CGCCAGGCCTTAGCCAAACACGTCAGGGCAGAGGCCCTGAGCTCCACCCT,"Exon (Tsks-202/Tsks, exon 10 of 11)",7,44943222,44958035,14814,1,Tsks-202,14384,Cpt1c-203;Cpt1c-206;Cpt1c-201;Cpt1c-204;Cpt1c-207;Tsks-202;Tsks-201;Tsks-204,Cpt1c;Cpt1c;Cpt1c;Cpt1c;Cpt1c;Tsks;Tsks;Tsks,10076;17120;17196;3666;8532;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,22116,ENSMUSG00000059891,conserved gene and region,7,44957573,44957736,164,*,164,11,0.652439024,0.630328442,0.067073171,0.000000682,CpGisland,TRUE,U11,Tr-P
26018,cg06763662,0.0000195,0.00000738,2.644497476,0.00859778,gain,ns,0.0000115,0.0000125,0.921533715,0.357488456,pos,ns,-0.001760503,0.003671036,-0.479565798,0.631874323,neg,ns,0.199369292,0.000181693,0.000126247,1.439190025,0.151105631,pos,ns,0.109847716,Gm2574,Gm2574_Intergenic_downstream,3,143101229,143101278,143101277,143101278,50,+,ATCAATTATGCAAATGAGTTCACAGACTTTGCAGATTACTTCATTTGCCG,Distal Intergenic,3,142962611,142963612,1002,1,Gm2574-201,138618,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,19,100040053,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
12537,cg15115387,0.000000066,0.00000304,0.021694917,0.982705276,gain,ns,0.00000476,0.00000517,0.921488256,0.357512141,pos,ns,0.001745112,0.001513562,1.152983928,0.249805232,pos,ns,0.60239847,-0.000122959,0.0000521,-2.362271459,0.018780975,neg,ns,0.924191004,Klhl28,Klhl28_Exon,12,64957593,64957642,64957641,64957642,50,-,GAGCATGAATTTTAACATCACCTACTCGAAGAATGATGTCACAGAGTTCG,"Exon (Klhl28-203/Klhl28, exon 2 of 5)",12,64938833,64965534,26702,2,Klhl28-203,7892,Klhl28-203;Klhl28-201;Klhl28-202,Klhl28;Klhl28;Klhl28,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,66689,ENSMUSG00000020948,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22396,cg07265167,0.00000223,0.0000132,0.168567109,0.866247082,gain,ns,0.0000207,0.0000225,0.921483612,0.357514561,pos,ns,0.008207765,0.006584977,1.246437843,0.213544731,pos,ns,0.67051114,-0.000218393,0.000226457,-0.964389427,0.335602412,neg,ns,0.76069102,Actc1,Actc1_Exon,2,114049538,114049587,114049538,114049539,50,+,CGCTCAGTGAGGATCTTCATGAGGTAGTCAGTGAGGTCCCGACCAGCCAG,"Exon (Actc1-201/Actc1, exon 4 of 7)",2,114047282,114052887,5606,2,Actc1-201,3300,Actc1-201;Actc1-202,Actc1;Actc1,0;3961,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,11464,ENSMUSG00000068614,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9776,cg24818253,-0.0000246,0.0000166,-1.476204764,0.140903966,loss,ns,0.0000261,0.0000283,0.921408512,0.357553691,pos,ns,0.000105443,0.008286617,0.012724467,0.989855803,pos,ns,0.004428067,-0.0000218,0.000284976,-0.076560117,0.939022874,neg,ns,0.616732838,Nell1,Nell1_Exon,7,50826315,50826364,50826363,50826364,50,+,TAACCTGCCAGGGTGGTACCACTGTGAGTGCAGAAGCGGTTTCCATGACG,"Exon (Nell1-201/Nell1, exon 16 of 20)",7,49974864,50866608,891745,1,Nell1-201,851451,Nell1-201;Nell1-202,Nell1;Nell1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,6,338352,ENSMUSG00000055409,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21842,cg17436547,-0.0000143,0.0000061,-2.344943863,0.019660497,loss,ns,0.00000954,0.0000104,0.921293522,0.357613612,pos,ns,0.007287555,0.003034407,2.401640279,0.016910124,pos,ns,1.771853203,-0.000280058,0.000104353,-2.683754374,0.007671129,neg,ns,0.839336746,Gm1943,Gm1943_Intron,8,109249318,109249367,109249318,109249319,50,-,CGACCATCCACTTTGATTGCAGAGTTATGGAAACCCATAGCAGTTGGCAG,"Intron (D030068K23Rik-202/D030068K23Rik-202, intron 8 of 9)",8,109340691,109340864,174,2,Gm1943-201,91546,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,28,384864,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4063,cg22587050,-0.00000402,0.00000293,-1.370312269,0.171580945,loss,ns,0.00000459,0.00000498,0.921270785,0.35762546,pos,ns,-0.000787302,0.00145915,-0.539561909,0.589886525,neg,ns,0.229231524,0.0000524,0.0000502,1.044652176,0.29699766,pos,ns,0.93275638,Gm45647,Gm45647_Intergenic_upstream,8,26677793,26677842,26677841,26677842,50,+,AGAGATATCAGATTGCAAAAGACTGCAAAACTAATATGTCACTGTCAGCG,Distal Intergenic,8,26780315,26780509,195,1,Gm45647-201,-102473,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,46,62,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4821,cg01801625,-0.00000397,0.00000263,-1.508050192,0.132560105,loss,ns,-0.00000412,0.00000447,-0.921235173,0.357644019,neg,ns,0.00055761,0.00130897,0.425991116,0.670409938,pos,ns,0.173659556,-0.000154645,0.000045,-3.435375421,0.000672378,neg,ns,0.929577475,Ctnnd2,Ctnnd2_Exon,15,30847341,30847390,30847389,30847390,50,+,CCTCTTCAGGATGATCGGAAAATACAGCTGCATTCATCACAGGTGCTGCG,"Exon (Ctnnd2-201/Ctnnd2, exon 12 of 23)",15,30172593,31029341,856749,1,Ctnnd2-201,674748,Ctnnd2-201;Ctnnd2-203,Ctnnd2;Ctnnd2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,10,18163,ENSMUSG00000022240,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10853,cg17683194,0.00000138,0.00000166,0.827888242,0.408370673,gain,ns,-0.0000026,0.00000283,-0.921194046,0.357665452,neg,ns,-0.001000307,0.0008279,-1.208245927,0.227873559,neg,ns,0.642306064,-0.00000245,0.0000285,-0.085976716,0.931540429,neg,ns,0.971962732,Tm9sf1,Tm9sf1_Exon,14,55640426,55640475,55640426,55640427,50,+,CGCTCGCCTCCAATCTGCCGGTAGAAGTGGCTGGACACGTAGCCAGAGAT,"Exon (Tm9sf1-202/Tm9sf1, exon 4 of 6)",14,55635965,55643251,7287,2,Tm9sf1-202,2776,Gm49378-201;Ipo4-201;Ipo4-209;Ipo4-205;Ipo4-202;Tm9sf1-202;Tm9sf1-205;Tm9sf1-204;Tm9sf1-203;Tm9sf1-213;Tm9sf1-201;Tm9sf1-208;Tm9sf1-207;Tm9sf1-206;Tm9sf1-211;Tm9sf1-212;Tm9sf1-210;Tm9sf1-209,Gm49378;Ipo4;Ipo4;Ipo4;Ipo4;Tm9sf1;Tm9sf1;Tm9sf1;Tm9sf1;Tm9sf1;Tm9sf1;Tm9sf1;Tm9sf1;Tm9sf1;Tm9sf1;Tm9sf1;Tm9sf1;Tm9sf1,-2531;-4742;-4795;-4469;-4857;0;0;0;0;0;0;0;0;0;0;0;3296;2858,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,74140,ENSMUSG00000002320,conserved gene and region,14,55640426,55640555,130,*,130,10,0.569230769,0.950292398,0.076923077,0.000000763,CpGisland,TRUE,U10,Tr-S
16432,cg02468520,0.000000328,0.00000266,0.123099113,0.902108383,gain,ns,0.00000417,0.00000452,0.921088114,0.357720663,pos,ns,0.00260201,0.001325193,1.963495226,0.050482243,pos,ns,1.296861354,-0.000135602,0.0000456,-2.975466716,0.003155505,neg,ns,0.938696224,Cntln,Cntln_Intron,4,84987764,84987813,84987764,84987765,50,-,CGGATGCCTAACTCAGTTGGTTTTCAACTGCTGAAATTATAAATAATTGT,"Intron (Cntln-201/Cntln, intron 8 of 25)",4,84884309,85131921,247613,1,Cntln-201,103455,Cntln-201;Cntln-204,Cntln;Cntln,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,25,338349,ENSMUSG00000038070,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20314,cg23047434,0.00000755,0.0000017,4.443614986,0.0000123,gain,ns,-0.00000266,0.00000288,-0.921079884,0.357724953,neg,ns,0.001002728,0.000845168,1.186423962,0.23636338,pos,ns,0.626419808,-0.0000129,0.0000291,-0.445405598,0.656337541,neg,ns,0.020067543,Hoxc5,Hoxc5_Intron,15,102998054,102998103,102998054,102998055,50,+,CGCGGCGCCCATTTGCACACGCTACACAAATGCATCGCATTCCCGGTTGT,"Intron (Hoxc5-202/Hoxc5, intron 1 of 1)",15,102967443,103015676,48234,1,Hoxc5-202,30611,Hoxc5-202;Hoxc6-202;Hoxc6-203;Hoxc8-201;Hoxc8-202,Hoxc5;Hoxc6;Hoxc6;Hoxc8;Hoxc8,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,46,134,15424,ENSMUSG00000022485,conserved gene but different region,15,102997967,102998098,132,*,132,9,0.613636364,0.776470588,0.068181818,0.00000904,CpGisland,TRUE,U13,Hc-P
27002,cg20765933,-0.0000138,0.00000494,-2.795730843,0.005501358,loss,ns,-0.00000774,0.0000084,-0.921052556,0.357739198,neg,ns,-0.00927702,0.00246078,-3.7699502,0.00019548,neg,ns,3.708897799,0.000152744,0.0000846,1.804925317,0.072056613,pos,ns,0.878632598,Cpne1,Cpne1_Exon,2,156098167,156098216,156098215,156098216,50,-,CACCTGTGCGCATCATACCAAGCCTTGCATCTTCATCAGTGGCAAAAACG,"Exon (Gm28036-202/Gm28036, exon 3 of 17)",2,156071842,156111935,40094,2,Cpne1-217,13719,Cpne1-217;Cpne1-209;Cpne1-202;Cpne1-203;Cpne1-201;Cpne1-210;Cpne1-206;Cpne1-212;Cpne1-208;Cpne1-205;Cpne1-213;Cpne1-216;Gm28036-201;Gm28036-202;Gm28036-203;Gm28036-204;Gm28036-205;Gm28036-208;Gm28036-207;Gm28036-206;Rbm12-201;Rbm12-202;Rbm12-204;Rbm12-203;Rbm12-205,Cpne1;Cpne1;Cpne1;Cpne1;Cpne1;Cpne1;Cpne1;Cpne1;Cpne1;Cpne1;Cpne1;Cpne1;Gm28036;Gm28036;Gm28036;Gm28036;Gm28036;Gm28036;Gm28036;Gm28036;Rbm12;Rbm12;Rbm12;Rbm12;Rbm12,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;-1239;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,9,266692,ENSMUSG00000074643,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25083,cg09586026,0.0000002,0.00000172,0.116704674,0.907169656,gain,ns,0.00000268,0.00000291,0.920797297,0.357872263,pos,ns,0.000585108,0.000853782,0.685312747,0.493658715,pos,ns,0.306573191,-0.0000392,0.0000294,-1.335903386,0.182560734,neg,ns,0.964838306,Nfasc,Nfasc_Exon,1,132620920,132620969,132620920,132620921,50,+,CGTACCCTTTACTCTCACCGAGATCGTGTGCCGGATGCTGCCCATCTTGT,"Exon (Nfasc-202/Nfasc, exon 10 of 30)",1,132564690,132741757,177068,2,Nfasc-202,120788,Nfasc-202;Nfasc-201;Nfasc-207;Nfasc-203;Nfasc-205;Nfasc-208;Nfasc-210,Nfasc;Nfasc;Nfasc;Nfasc;Nfasc;Nfasc;Nfasc,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,10,269116,ENSMUSG00000026442,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3534,cg07772999,0.00000136,0.00000729,0.186821189,0.851923037,gain,ns,0.0000114,0.0000124,0.920734897,0.357904796,pos,ns,-0.003515625,0.003626058,-0.969544512,0.333029416,neg,ns,0.477517404,0.0000613,0.0001247,0.49167493,0.623297115,pos,ns,0.391529043,Pax8,Pax8_Exon,2,24435862,24435911,24435862,24435863,50,-,CGACTTGCTGCAGATCCAAAAAGGCGGAGCTAGATAAAGAGGAAGGGGTG,"Exon (Pax8-201/Pax8, exon 9 of 12)",2,24420560,24475599,55040,2,Pax8-201,39688,Pax8-201;Pax8-204;Pax8-208;Pax8-203,Pax8;Pax8;Pax8;Pax8,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,6,18510,ENSMUSG00000026976,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13713,cg12789994,-0.0000123,0.00000159,-7.712425473,1.70E-13,loss,yes,-0.00000249,0.0000027,-0.920681123,0.357932834,neg,ns,0.00118391,0.000792184,1.494488654,0.136065135,pos,ns,0.866253142,-0.00000563,0.0000272,-0.206700819,0.836379215,neg,ns,0.96740094,Rapgef4,Rapgef4_Exon,2,72201058,72201107,72201058,72201059,50,-,CGAATACAGTCAGACTTAAAGAACATGACCAAGATGTCTTGGTGCTGGAG,"Exon (Rapgef4-202/Rapgef4, exon 15 of 31)",2,71981240,72257474,276235,1,Rapgef4-202,219818,Rapgef4-202;Rapgef4-203;Rapgef4-201;Rapgef4-204;Rapgef4-210;Rapgef4-211,Rapgef4;Rapgef4;Rapgef4;Rapgef4;Rapgef4;Rapgef4,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,11,56508,ENSMUSG00000049044,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U5,En-Sd
5801,cg02323953,0.000000832,0.00000437,0.190516203,0.849029349,gain,ns,-0.00000683,0.00000742,-0.920641484,0.357953503,neg,ns,-0.001250469,0.002172951,-0.575470456,0.565390639,neg,ns,0.247651386,0.000067,0.0000747,0.896052038,0.37092024,pos,ns,0.920440419,Hdac9,Hdac9_Intron,12,34823388,34823437,34823388,34823389,50,-,CGTAAATTTTAAAAACAGGGGCAGGCCTTCTGGGTCCCATATGCTTCTAA,"Intron (Hdac9-210/Hdac9, intron 3 of 26)",12,34095877,34917095,821219,2,Hdac9-210,93658,Hdac9-210;Hdac9-211;Hdac9-209,Hdac9;Hdac9;Hdac9,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,19,31,79221,ENSMUSG00000004698,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1946,cg18945204,-0.0000092,0.0000028,-3.28386316,0.001141077,loss,ns,0.00000438,0.00000476,0.920624899,0.357962151,pos,ns,0.002660713,0.001393931,1.908783067,0.057213362,pos,ns,1.242502528,-0.0000912,0.0000479,-1.903227669,0.057936962,neg,ns,0.935693053,Hgf,Hgf_Exon,5,16572455,16572504,16572503,16572504,50,-,TGCTCTTATACTGTAATGATTATCATTTTAAAACTAGCTTTTTGCCTTCG,"Exon (Hgf-202/Hgf, exon 6 of 6)",5,16553495,16573434,19940,1,Hgf-202,18960,Hgf-202;Hgf-204;Hgf-206;Hgf-205;Hgf-201;Hgf-203,Hgf;Hgf;Hgf;Hgf;Hgf;Hgf,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,8,15234,ENSMUSG00000028864,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15232,cg10417180,-0.00000451,0.00000811,-0.556166725,0.578498095,loss,ns,-0.0000127,0.0000138,-0.920540311,0.358006261,neg,ns,0.006540997,0.004034679,1.621193994,0.105992683,pos,ns,0.974724113,-0.000321882,0.000138752,-2.319831601,0.020999263,neg,ns,0.836803375,Atl2,Atl2_threeUTR,17,79850699,79850748,79850747,79850748,50,-,TTGTTATTGTTGGATGACAGTCTCTGTCGCTGTGCTGATGAAAGAGCACG,3' UTR,17,79848390,79896123,47734,2,Atl2-201,45375,Atl2-201;Atl2-208;Atl2-202;Atl2-203;Atl2-205;Atl2-207;Atl2-204,Atl2;Atl2;Atl2;Atl2;Atl2;Atl2;Atl2,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,5,7,56298,ENSMUSG00000059811,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3945,cg14870509,0.00000528,0.00000821,0.643062216,0.520659097,gain,ns,-0.0000128,0.0000139,-0.920233783,0.358166132,neg,ns,0.002751224,0.0040866,0.673230624,0.501302163,pos,ns,0.299900422,-0.000176278,0.000140538,-1.254312793,0.210673271,neg,ns,0.849145752,5730522E02Rik,5730522E02Rik_Intron,11,25855571,25855620,25855619,25855620,50,+,CGAAACTGGTGCTAATAAAGCCCACTATATTCTTCGGAAATATCAAGCCG,"Intron (5730522E02Rik-202/5730522E02Rik, intron 2 of 5)",11,25617668,26210569,592902,2,5730522E02Rik-202,354949,5730522E02Rik-202;5730522E02Rik-201;5730522E02Rik-204,5730522E02Rik;5730522E02Rik;5730522E02Rik,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,90,70626,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22072,cg01366864,-0.0000265,0.00000531,-4.988389731,0.00000102,loss,yes,0.0000083,0.00000902,0.920187478,0.358190286,pos,ns,-0.000699868,0.002643656,-0.264734866,0.791389648,neg,ns,0.101609635,-0.0000165,0.0000909,-0.181512871,0.856083655,neg,ns,0.805081858,Mtss2,Mtss2_Exon,8,110731995,110732044,110731995,110731996,50,-,CGGAGCCCCATGGCCTGGGGGTGCCCAAACATACTCACCCAGTTCCACCT,"Exon (Mtss2-204/Mtss2, exon 8 of 8)",8,110721476,110741400,19925,1,Mtss2-201,10519,Mtss2-201;Mtss2-205;Mtss2-204;Mtss2-206;Mtss2-203,Mtss2;Mtss2;Mtss2;Mtss2;Mtss2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,244654,ENSMUSG00000033763,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11629,cg02697649,0.000077,0.0000108,7.108708744,8.11E-12,gain,yes,-0.0000169,0.0000184,-0.92013249,0.358218972,neg,ns,0.012682991,0.005391365,2.35246401,0.019274441,pos,ns,1.71501821,-0.00058296,0.000185409,-3.144191394,0.001826768,neg,ns,0.653096183,Fzd7,Fzd7_Exon,1,59484628,59484677,59484628,59484629,50,-,CGCTTCTACCACAGACTTAGCCACAGCAGCAAGGGGGAGACTGCGGTATG,"Exon (Fzd7-201/Fzd7, exon 1 of 1)",1,59482424,59486955,4532,1,Fzd7-201,2204,Fzd7-201,Fzd7,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,14369,ENSMUSG00000041075,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13941,cg15061730,-0.0000019,0.00000198,-0.956929163,0.339348676,loss,ns,0.0000031,0.00000337,0.9199273,0.358326024,pos,ns,0.001205235,0.000987556,1.22042189,0.223232508,pos,ns,0.651242561,-0.00000413,0.000034,-0.121581149,0.903309516,neg,ns,0.952756338,Mex3c,Mex3c_Exon,18,73590634,73590683,73590634,73590635,50,-,CGACTGTGTGATTTGCTTTGAGAATGAGGTTATTGCTGCCCTAGTTCCAT,"Exon (Mex3c-201/Mex3c, exon 2 of 2)",18,73573044,73592575,19532,1,Mex3c-201,17590,Mex3c-201,Mex3c,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,5,240396,ENSMUSG00000037253,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23966,cg23206974,0.0000127,0.00000401,3.162780546,0.001717487,gain,ns,-0.00000627,0.00000682,-0.919825775,0.358379,neg,ns,-0.000172665,0.001998157,-0.086411939,0.931194742,neg,ns,0.030959485,-0.0000202,0.0000687,-0.294610195,0.76848886,neg,ns,0.89860649,Erp29,Erp29_threeUTR,5,121429424,121429473,121429424,121429425,50,-,CGGCCTGAAATGAACCCTGCAAGGCTGTATATCAGAGGGTATGTTGTTGA,3' UTR,5,121428590,121452487,23898,2,Erp29-204,23014,Erp29-204;Naa25-201;Naa25-205;Naa25-202;Naa25-203,Erp29;Naa25;Naa25;Naa25;Naa25,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,11,11,67397,ENSMUSG00000029616,mapped to different genes,5,121429273,121429444,172,*,172,10,0.523255814,0.856147337,0.058139535,0.00000923,CpGisland,TRUE,U10,Tr-S
5359,cg17547334,0.00000407,0.00000133,3.066966205,0.002353025,gain,ns,-0.00000207,0.00000225,-0.919787356,0.358399049,neg,ns,0.001230398,0.000660305,1.863378023,0.063354535,pos,ns,1.198222295,-0.0000289,0.0000227,-1.272835729,0.204030091,neg,ns,0.016069953,Lmx1b,Lmx1b_Intron,2,33616622,33616671,33616670,33616671,50,+,TATTGTGTGAGGAATATCAATGGAGTAATTACAGTTACATCGGGCGCCCG,"Intron (Lmx1b-201/Lmx1b, intron 2 of 7)",2,33560965,33640608,79644,2,Lmx1b-201,23937,Lmx1b-201;Lmx1b-203;Lmx1b-204;Lmx1b-202,Lmx1b;Lmx1b;Lmx1b;Lmx1b,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,26,16917,ENSMUSG00000038765,conserved gene and region,2,33616662,33616784,123,*,123,19,0.707317073,1.243085106,0.154471545,9.00E-19,CpGisland,TRUE,NA,NRS
27940,cg26712198,-0.0000619,0.0000113,-5.477792383,8.92E-08,loss,yes,0.0000177,0.0000192,0.919736258,0.358425714,pos,ns,-0.013089286,0.005628185,-2.325667311,0.02068123,neg,ns,1.684423628,0.0000782,0.000193553,0.403819486,0.686623886,pos,ns,0.710220648,Rps6kc1,Rps6kc1_Intron,1,190714015,190714064,190714063,190714064,50,+,TCATTCTTCTGACTTCTTGTAATTCACGCTTTACAAAAATTAAGACCCCG,"Intron (Rps6kc1-204/Rps6kc1, intron 11 of 12)",1,190700202,190911747,211546,2,Rps6kc1-204,197683,Rps6kc1-204,Rps6kc1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,29,320119,ENSMUSG00000089872,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23202,cg02526543,-0.00000949,0.00000505,-1.879254987,0.061147646,loss,ns,-0.00000789,0.00000858,-0.919440242,0.358580216,neg,ns,-0.0029024,0.002513574,-1.154690776,0.249106395,neg,ns,0.603615124,0.0000175,0.0000864,0.202506091,0.839653936,pos,ns,0.795842499,Rnf220,Rnf220_Intron,4,117434500,117434549,117434548,117434549,50,-,TACAGAAACCGTTCCACTGTAAAACTTTATGATTTGAATCTTTATAGCCG,"Intron (Rnf220-201/Rnf220, intron 2 of 14)",4,117271463,117497052,225590,2,Rnf220-201,62503,Rnf220-201;Rnf220-207,Rnf220;Rnf220,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10468,cg11844174,0.00000572,0.00000225,2.541148754,0.01153602,gain,ns,0.00000351,0.00000382,0.919405425,0.358598391,pos,ns,0.001654763,0.001119513,1.478110715,0.140393432,pos,ns,0.852653208,-0.0000688,0.0000385,-1.788138983,0.074730127,neg,ns,0.941200031,Npas3,Npas3_Intron,12,53707884,53707933,53707932,53707933,50,-,TTTACTGTAAATCACTGTACATCAGCATATTCCCACACATGAGATAATCG,"Intron (Npas3-204/Npas3, intron 3 of 10)",12,53248157,54069532,821376,1,Npas3-204,459727,Npas3-204;Npas3-201;Npas3-203,Npas3;Npas3;Npas3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,83,103,27386,ENSMUSG00000021010,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18313,cg04358187,0.000139736,0.0000186,7.518028827,6.03E-13,gain,yes,-0.000029,0.0000316,-0.919382077,0.35861058,neg,ns,0.028612937,0.009250855,3.093004565,0.002161722,pos,ns,2.665200115,-0.000502295,0.000318136,-1.578868571,0.11538602,neg,ns,0.258246606,Gm48316,Gm48316_Intergenic_upstream,13,94708173,94708222,94708221,94708222,50,-,AATACGGTTCCTTCTCTTAGCTACCGCATGAATACAGTAAGTGGTGGCCG,Distal Intergenic,13,94752270,94752593,324,1,Gm48316-201,-44097,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,36,42,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
6607,cg26424339,0.00000283,0.000000773,3.663510492,0.000292504,gain,ns,-0.00000121,0.00000131,-0.919335445,0.358634924,neg,ns,0.000908796,0.000384718,2.362240794,0.0187825,pos,ns,1.726246591,-0.0000255,0.0000132,-1.924788136,0.055170786,neg,ns,0.008359513,Rreb1,Rreb1_Intron,13,37827967,37828016,37827967,37827968,50,+,CGGACGAGCAGTTCACATTCCATTACGAAATTCTACACGGCTTCAGAGCC,"Intron (Rreb1-204/Rreb1, intron 1 of 3)",13,37778400,37893849,115450,1,Rreb1-204,49567,Rreb1-204;Rreb1-208;Rreb1-203;Rreb1-207;Rreb1-210;Rreb1-206;Rreb1-202,Rreb1;Rreb1;Rreb1;Rreb1;Rreb1;Rreb1;Rreb1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,10,68750,ENSMUSG00000039087,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
8856,cg05004394,-0.0000309,0.0000083,-3.724798072,0.00023219,loss,ns,0.000013,0.0000141,0.919287397,0.358660009,pos,ns,-0.002745512,0.004133272,-0.664246598,0.50702625,neg,ns,0.294969556,0.0000132,0.000142143,0.092567718,0.926306783,pos,ns,0.840762997,Gm6580,Gm6580_Intergenic_downstream,14,46038036,46038085,46038036,46038037,50,+,CGTGTTAAGTGCAAATGAGTCAGAAACATAAGGATTAAATTTCCCTTAAA,Distal Intergenic,14,46027428,46028784,1357,1,Gm6580-201,10608,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,3,625377,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25230,cg10405454,-0.00000315,0.00000807,-0.39043894,0.696480155,loss,ns,-0.0000126,0.0000137,-0.919271662,0.358668224,neg,ns,-0.003017027,0.004016241,-0.751206736,0.453098124,neg,ns,0.343807736,-0.00018032,0.000138118,-1.305546852,0.192674772,neg,ns,0.750685506,Gm43193,Gm43193_Intron,3,133995541,133995590,133995541,133995542,50,-,CGAGTGAAAAGGTAAATTTCATGGGATTTCTAAAAATGGCTGGATTTCTC,"Intron (Gm26691-203/Gm26691-203, intron 1 of 2)",3,134180911,134181351,441,1,Gm43193-201,-185370,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1729,cg20138700,0.000048,0.00000571,8.416518445,1.45E-15,gain,yes,0.00000891,0.00000969,0.919231141,0.358689379,pos,ns,0.013073599,0.002839849,4.603625146,0.00000607,pos,ns,5.217145352,-0.000188959,0.0000977,-1.934827648,0.05392098,neg,ns,0.125963429,Gm5513,Gm5513_Intergenic_downstream,19,14890899,14890948,14890899,14890900,50,+,CGCATAATGGTGTTCAATGAAGTGTGAGACTTTTAGTTCAGTCTCGCTGA,Distal Intergenic,19,14959549,14960766,1218,2,Gm5513-201,69818,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,22,433225,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
26765,cg26444318,0.0000411,0.0000115,3.58399353,0.000392869,gain,ns,0.0000179,0.0000195,0.91917178,0.358720374,pos,ns,0.007552446,0.00570116,1.324721031,0.186239392,pos,ns,0.729928456,-0.000365734,0.000196062,-1.86539781,0.063070165,neg,ns,0.584678561,Iqsec2,Iqsec2_Exon,X,152202930,152202979,152202978,152202979,50,+,AGTGACCTGAGCACAGCGGTTGATAGTCCTGGGAGCCAACCCCCCTACCG,"Exon (Iqsec2-207/Iqsec2, exon 3 of 15)",20,152144268,152225235,80968,1,Iqsec2-207,58662,Iqsec2-207;Iqsec2-202;Iqsec2-203;Iqsec2-206;Iqsec2-201,Iqsec2;Iqsec2;Iqsec2;Iqsec2;Iqsec2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,16,245666,ENSMUSG00000041115,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17771,cg04081874,-0.0000139,0.00000349,-3.971212897,0.000089,loss,ns,-0.00000545,0.00000593,-0.91915086,0.358731297,neg,ns,0.001375706,0.001738476,0.791328989,0.429357069,pos,ns,0.367181382,-0.000120761,0.0000598,-2.019891093,0.044254647,neg,ns,0.946119685,Son,Son_threeUTR,16,91662475,91662524,91662523,91662524,50,-,TTACTTTTGCTTTCCAGTTTTAGAAGCCAAACTGACTGAGGAGTGGGACG,3' UTR,16,91647506,91679207,31702,1,Son-203,14969,Son-203;Son-204;Son-202;Son-208;Son-201;Son-205;Son-212;Son-207,Son;Son;Son;Son;Son;Son;Son;Son,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,14,31,20658,ENSMUSG00000022961,conserved gene and region,16,91662523,91662634,112,*,112,9,0.508928571,1.26,0.080357143,0.00000238,CpGisland,TRUE,U10,Tr-S
13501,cg11636011,-0.0000154,0.00000524,-2.93575246,0.003576261,loss,ns,-0.00000819,0.00000891,-0.919122887,0.358745903,neg,ns,-0.00241731,0.002609136,-0.926479215,0.354917706,neg,ns,0.449872334,0.00000454,0.0000897,0.050612909,0.959666572,pos,ns,0.910060292,Gm49430,Gm49430_Intergenic_downstream,15,70918531,70918580,70918531,70918532,50,+,CGATAATTGTCAGGGGAAGAATATAAGTGTAATAAAATGCAAGTTTCTTT,Distal Intergenic,15,70961618,70962464,847,2,Gm49430-201,43884,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,3,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22529,cg09666235,-0.000000445,0.0000136,-0.032602311,0.974012708,loss,ns,0.0000213,0.0000232,0.919028494,0.358795194,pos,ns,0.009879635,0.006791823,1.454636653,0.146781643,pos,ns,0.833328256,-0.000526167,0.00023357,-2.252712195,0.024976393,neg,ns,0.848413671,Rps4l-ps,Rps4l-ps_Promoter,7,114933968,114934017,114933968,114933969,50,-,CGGCACACAGTGCCATGTGGGAGTGTAATTGCTAAGGAATAAAATCTTGT,Promoter (6-7kb),7,114926959,114927726,768,2,Rps4l-ps-201,-6291,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,19,627967,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9133,cg17702669,0.000000887,0.00000984,0.09017329,0.928207743,gain,ns,-0.0000154,0.0000167,-0.919020469,0.358799385,neg,ns,-0.000254395,0.004896749,-0.051951754,0.958600597,neg,ns,0.018362305,-0.000191692,0.000168399,-1.13832237,0.255864848,neg,ns,0.815968084,Taf5,Taf5_Exon,19,47074853,47074902,47074853,47074854,50,-,CGAGTATTATCTAGTCTTACCAAAAAGGAACACATGAAAGGGAATGAGAC,"Exon (Taf5-201/Taf5, exon 3 of 11)",19,47067746,47083479,15734,1,Taf5-201,7107,Taf5-201,Taf5,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,10,226182,ENSMUSG00000025049,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12440,cg20135974,0.0000641,0.00000787,8.139971567,9.71E-15,gain,yes,-0.0000123,0.0000134,-0.919013955,0.358802786,neg,ns,0.01903309,0.003919437,4.85607741,0.0000019,pos,ns,5.720706747,-0.0005035,0.000134789,-3.73546196,0.000222975,neg,ns,0.152800309,Onecut2,Onecut2_Promoter,18,64338561,64338610,64338609,64338610,50,-,GTCCACCCTGTCCTTAATTACTGTCTCTTTAAACAAAGGCAACATCTGCG,Promoter (1-2kb),18,64340020,64400987,60968,1,Onecut2-201,-1459,Onecut2-201,Onecut2,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,19,225631,ENSMUSG00000045991,conserved gene and region,18,64338609,64338705,97,*,97,8,0.525773196,1.193846154,0.082474227,0.00000927,CpGisland,TRUE,NA,NRS
10207,cg11647864,0.00000109,0.00000465,0.233618387,0.815435447,gain,ns,-0.00000725,0.00000789,-0.91897665,0.358822268,neg,ns,-0.000783365,0.002312486,-0.338754479,0.735024032,neg,ns,0.133698461,-0.0000838,0.0000795,-1.054225311,0.292600736,neg,ns,0.889195775,Chd8,Chd8_Exon,14,52236890,52236939,52236938,52236939,50,+,ACCTTGGCGGCCAACACTGTATTACCAGAGACAATGGAAACACCTGGTCG,Promoter (<=1kb),14,52198151,52237572,39422,2,Chd8-201,633,Chd8-201;Chd8-212;Chd8-213,Chd8;Chd8;Chd8,0;0;7570,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,12,67772,ENSMUSG00000053754,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
488,cg22490506,-0.000000319,0.000000304,-1.049574233,0.294731453,loss,ns,-0.000000475,0.000000517,-0.918904412,0.358859994,neg,ns,0.000132509,0.000151493,0.874688805,0.382420402,pos,ns,0.417458946,-0.00000666,0.00000521,-1.278231038,0.202124199,neg,ns,0.007785251,Epc1,Epc1_fiveUTR,18,6490820,6490869,6490820,6490821,50,+,CGCCATGGCCAACATGGCGGACATTAAAACTCCACTGTGCGCTCTTCAGC,Promoter (<=1kb),18,6435953,6490856,54904,2,Epc1-201,0,Epc1-203;Epc1-201;Epc1-202,Epc1;Epc1;Epc1,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,8,13831,ENSMUSG00000024240,conserved gene and region,18,6490174,6491299,1126,*,1126,149,0.703374778,1.070212481,0.132326821,4.64E-133,CpGisland,TRUE,U1,Pr-A
14970,cg07575978,-0.000000323,0.00000121,-0.266935281,0.789696475,loss,ns,-0.00000189,0.00000206,-0.918746869,0.358942279,neg,ns,-0.000573737,0.000602369,-0.95246755,0.34160196,neg,ns,0.466479646,-0.00000211,0.0000207,-0.101970058,0.918846366,neg,ns,0.967566237,Supt6,Supt6_Exon,11,78221166,78221215,78221214,78221215,50,-,TTCATGAAGACTTTGGGACCCATGTGGCACATGGTGACCAGCTGGGTCCG,"Exon (Supt6-201/Supt6, exon 24 of 37)",11,78206746,78245987,39242,2,Supt6-201,24772,Supt6-201;Supt6-202,Supt6;Supt6,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,7,20926,ENSMUSG00000002052,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
947,cg20954708,-0.00000436,0.00000156,-2.789242694,0.00560999,loss,ns,0.00000244,0.00000266,0.918696567,0.358968555,pos,ns,0.002042418,0.000778516,2.623475798,0.009134274,pos,ns,2.039325967,-0.000041,0.0000268,-1.532065593,0.126526092,neg,ns,0.056000082,Stxbp5,Stxbp5_fiveUTR,10,9900641,9900690,9900641,9900642,50,+,CGGTCAGGCCGTCCAGCACCTTCCTGATGTTGAATTTCCTCATGGTCTCG,Promoter (<=1kb),10,9755547,9900683,145137,2,Stxbp5-201,0,Stxbp5-201;Stxbp5-209;Stxbp5-202,Stxbp5;Stxbp5;Stxbp5,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,5,78808,ENSMUSG00000019790,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
14083,cg17673225,0.0000207,0.0000181,1.142175025,0.254262695,gain,ns,0.0000282,0.0000307,0.918609698,0.359013934,pos,ns,0.006182018,0.009002884,0.68667092,0.492803438,pos,ns,0.307326271,0.000385447,0.000309608,1.244948619,0.214090926,pos,ns,0.305221493,Evx2,Evx2_threeUTR,2,74653943,74653992,74653943,74653944,50,+,CGGGGAGCATTATGGAAATATCTGGGCTTGATTTAATGAGGCTGTTCACA,3' UTR,2,74652991,74659557,6567,2,Evx2-201,5565,Evx2-201;Evx2-202,Evx2;Evx2,0;5427,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,8,35,14029,ENSMUSG00000001815,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
11293,cg08467352,0.00000153,0.00000145,1.056680599,0.29148014,gain,ns,-0.00000226,0.00000246,-0.91858324,0.359027756,neg,ns,0.001849058,0.000721589,2.562481175,0.010864907,pos,ns,1.963973987,-0.0000574,0.0000248,-2.312170121,0.021423293,neg,ns,0.958722226,Gm13531,Gm13531_Intergenic_downstream,2,57375451,57375500,57375499,57375500,50,-,CTGAGCTTTGATAAATCTATTACAGTTTCATTTCACTGATTTCATTAACG,Distal Intergenic,2,57425167,57425709,543,2,Gm13531-201,50258,Gpd2-207;Gpd2-202;Gpd2-201,Gpd2;Gpd2;Gpd2,0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,10,271788,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25502,cg12122265,-0.0000026,0.00000205,-1.266910665,0.206138221,loss,ns,-0.00000321,0.00000349,-0.918532891,0.35905406,neg,ns,-0.002245735,0.001022423,-2.196482965,0.028797558,neg,ns,1.540644339,0.0000418,0.0000352,1.189859103,0.235012237,pos,ns,0.966876174,Mgmt,Mgmt_Intron,7,137005298,137005347,137005346,137005347,50,+,TGCTAAGCACCCAAAACTCTAGGGGACTGGCACTAATTTCCTCTCTCTCG,"Intron (Mgmt-201/Mgmt, intron 2 of 4)",7,136894614,137130266,235653,1,Mgmt-201,110684,Mgmt-201,Mgmt,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,16,17314,ENSMUSG00000054612,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1097,cg21583981,0.0000907,0.0000128,7.090905739,9.06E-12,gain,yes,-0.00002,0.0000217,-0.918435084,0.359105161,neg,ns,0.008034896,0.006365344,1.262287807,0.207794035,pos,ns,0.682366923,-0.000254032,0.000218904,-1.160475414,0.2467482,neg,ns,0.079622425,Ptprg,Ptprg_Exon,14,11554267,11554316,11554267,11554268,50,+,CGTGTTGGTGGATTTTGTTCCTGAAAATCACCAGTTCCGTGCTCCATTAT,Promoter (<=1kb),14,11553532,12242041,688510,1,Ptprg-201,735,Ptprg-201;Ptprg-204;Ptprg-205,Ptprg;Ptprg;Ptprg,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,23,19270,ENSMUSG00000021745,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20899,cg02755069,0.000046,0.00000641,7.164936466,5.71E-12,gain,yes,0.00001,0.0000109,0.918274934,0.359188844,pos,ns,0.002712984,0.003192336,0.849843121,0.396068167,pos,ns,0.402230061,0.000128947,0.000109784,1.174548576,0.241076817,pos,ns,0.073343076,Pax6,Pax6_Exon,2,105685004,105685053,105685052,105685053,50,-,ATAGCCCAGTATAAGCGGGAGTGCCCGTCCATCTTTGCTTGGGAAATCCG,"Exon (Pax6-206/Pax6, exon 6 of 13)",2,105668900,105697364,28465,1,Pax6-206,16104,Pax6-206;Pax6-207;Pax6-210;Pax6-214;Pax6-208;Pax6-202;Pax6-205;Pax6-225;Pax6-204;Pax6-201;Pax6-203;Pax6-224;Pax6-219;Pax6-221;Pax6-213;Pax6-211;Pax6-222;Pax6-212;Pax6-215;Pax6-223;Pax6-209;Pax6-216,Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,Exon,31,78,18508,ENSMUSG00000027168,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
25535,cg20433084,0.000018,0.00000461,3.898400467,0.000118719,gain,ns,0.00000719,0.00000783,0.918224318,0.359215296,pos,ns,0.002243938,0.002294666,0.977892778,0.328889861,pos,ns,0.482949515,-0.0000748,0.0000789,-0.947245372,0.344251551,neg,ns,0.909481686,Ebf3,Ebf3_Exon,7,137199049,137199098,137199097,137199098,50,+,GAATATGAATCTGCGTGATGACGTGTGACAAAAACAGACACTTACTGCCG,"Exon (Ebf3-204/Ebf3, exon 14 of 16)",7,137193673,137314445,120773,2,Ebf3-204,115347,Ebf3-204;Ebf3-201;Ebf3-202;Ebf3-203;Ebf3-208;Ebf3-205,Ebf3;Ebf3;Ebf3;Ebf3;Ebf3;Ebf3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,84,13593,ENSMUSG00000010476,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20676,cg23506923,-0.00000224,0.000000819,-2.737801255,0.006542507,loss,ns,0.00000128,0.00000139,0.91819799,0.359229054,pos,ns,0.00011572,0.000407816,0.283754578,0.776787884,pos,ns,0.109697557,0.00000532,0.000014,0.379186412,0.704809036,pos,ns,0.026869379,Dync1li2,Dync1li2_fiveUTR,8,104442796,104442845,104442796,104442797,50,-,CGCCATCTTGCCAACTGCAGCCACAAAGAGGGCCCTCCCCCGGGCCCGCC,Promoter (<=1kb),8,104417680,104443047,25368,2,Dync1li2-201,202,Dync1li2-201;Dync1li2-205;Dync1li2-207;Dync1li2-203;Dync1li2-202;Dync1li2-208;Dync1li2-204;Terb1-201;Terb1-203;Terb1-202;Terb1-204,Dync1li2;Dync1li2;Dync1li2;Dync1li2;Dync1li2;Dync1li2;Dync1li2;Terb1;Terb1;Terb1;Terb1,0;0;0;0;-2240;-1466;-52;67042;67038;67037;67065,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,2,234663,ENSMUSG00000035770,conserved gene but different region,8,104442732,104443088,357,*,357,45,0.742296919,0.920841454,0.12605042,1.88E-39,CpGisland,TRUE,U1,Pr-A
15160,cg03581780,0.000000414,0.00000449,0.092163521,0.92662765,gain,ns,0.000007,0.00000763,0.918165335,0.35924612,pos,ns,0.003653678,0.002234033,1.635463028,0.10296693,pos,ns,0.987302236,-0.0000739,0.0000768,-0.961299709,0.337150695,neg,ns,0.907768052,Nf1,Nf1_Exon,11,79463194,79463243,79463194,79463195,50,+,CGGTGCTGTGACTTGTTTGTGCTCATCTCTGTTCTGTAGGCAACTTGCCA,"Exon (Nf1-201/Nf1, exon 31 of 58)",11,79339792,79578942,239151,1,Nf1-202,123402,Nf1-209;Nf1-202;Nf1-201;Nf1-203;Nf1-204,Nf1;Nf1;Nf1;Nf1;Nf1,123402;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,6,18015,ENSMUSG00000020716,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6541,cg23064184,-0.00000502,0.00000261,-1.925683277,0.055058374,loss,ns,0.00000406,0.00000443,0.917955173,0.359355966,pos,ns,0.002718268,0.001296645,2.096385755,0.036858297,pos,ns,1.43346473,-0.000117313,0.0000446,-2.630848422,0.008942791,neg,ns,0.936639769,Zfp536,Zfp536_Intron,7,37650966,37651015,37650966,37650967,50,-,CGATCACTTAATAGCATTTAGAAAATACTGCAGTGGGGAACAGGTTATAA,"Intron (Zfp536-202/Zfp536, intron 3 of 6)",7,37479104,37769624,290521,2,Zfp536-202,118609,Zfp536-202;Zfp536-201;Zfp536-203;Zfp536-206;Zfp536-209;Zfp536-208,Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,73,112,243937,ENSMUSG00000043456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5090,cg11086568,-0.00000208,0.00000115,-1.816544398,0.070252568,loss,ns,0.00000179,0.00000195,0.917599124,0.359542112,pos,ns,0.000462914,0.000570957,0.810768814,0.418120445,pos,ns,0.378698596,-0.000000947,0.0000196,-0.048226925,0.961566448,neg,ns,0.035163694,Fbxo45,Fbxo45_Exon,16,32246634,32246683,32246634,32246635,50,-,CGCAGCTCCGCAGCTCGGACAGCTCCAGGTAAGAGAACACCAACTCCAGC,Promoter (<=1kb),16,32230112,32247158,17047,2,Fbxo45-201,475,Fbxo45-201;Wdr53-203;Wdr53-204;Wdr53-201;Wdr53-202,Fbxo45;Wdr53;Wdr53;Wdr53;Wdr53,0;-544;-544;-570;-718,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,268882,ENSMUSG00000035764,conserved gene and region,16,32246530,32247305,776,*,776,107,0.74871134,0.997165778,0.137886598,5.36E-98,CpGisland,TRUE,U1,Pr-A
26749,cg24809958,-0.00000222,0.00000133,-1.663875943,0.097147708,loss,ns,0.00000208,0.00000226,0.917573905,0.359555298,pos,ns,-0.000204946,0.000663194,-0.309029198,0.757506905,neg,ns,0.120613404,0.00000751,0.0000228,0.329069549,0.742325324,pos,ns,0.037097781,Klhl21,Klhl21_Exon,4,152009341,152009390,152009341,152009342,50,+,CGACCTGGCCAACTGCCTGGACATGCAGGACTTCGCTGAGGCCTTCAGCT,Promoter (<=1kb),4,152008803,152017680,8878,1,Klhl21-201,538,Klhl21-201,Klhl21,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,242785,ENSMUSG00000073700,conserved gene and region,4,152008836,152009962,1127,*,1127,146,0.715173026,1.013639052,0.129547471,8.21E-129,CpGisland,TRUE,NA,NRS
4996,cg13951169,-0.0000135,0.00000867,-1.558605275,0.120110112,loss,ns,0.0000135,0.0000147,0.917534602,0.359575851,pos,ns,0.012072253,0.00431627,2.796917894,0.00548169,pos,ns,2.261085496,-0.000549078,0.000148436,-3.699084063,0.000255908,neg,ns,0.793808092,Ankrd28,Ankrd28_Exon,14,31736748,31736797,31736796,31736797,50,+,AATACTTTTTACCACTCTGGATAATGGTTTGTGATCGGGAGAATCTACCG,"Exon (Ankrd28-207/Ankrd28, exon 9 of 28)",14,31698768,31780393,81626,2,Ankrd28-207,43596,Ankrd28-207;Ankrd28-201;Ankrd28-204;Ankrd28-205;Ankrd28-203;Ankrd28-208,Ankrd28;Ankrd28;Ankrd28;Ankrd28;Ankrd28;Ankrd28,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,5,105522,ENSMUSG00000014496,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11344,cg24291087,0.000110541,0.0000108,10.27320438,1.68E-21,gain,yes,-0.0000168,0.0000183,-0.917267904,0.359715331,neg,ns,0.011094364,0.005355446,2.071603902,0.03912924,pos,ns,1.407498583,-0.0000811,0.000184173,-0.440613366,0.659800016,neg,ns,0.073805565,Pcdh7,Pcdh7_fiveUTR,5,57718848,57718897,57718848,57718849,50,+,CGATTAGCACCCATTGCATGAATTATGAAACAATAACTTTCGGAAGAAGC,Promoter (<=1kb),5,57717967,58133230,415264,1,Pcdh7-203,881,Pcdh7-203;Pcdh7-201;Pcdh7-202;Pcdh7-205;Pcdh7-206;Pcdh7-207;Pcdh7-204,Pcdh7;Pcdh7;Pcdh7;Pcdh7;Pcdh7;Pcdh7;Pcdh7,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,13,54216,ENSMUSG00000029108,conserved gene and region,5,57718758,57718889,132,*,132,13,0.575757576,1.230107527,0.098484849,3.82E-10,CpGisland,TRUE,U3,Pr-B
25376,cg08216101,0.0000114,0.00000357,3.192077732,0.001557457,gain,ns,0.00000556,0.00000606,0.91722993,0.359735193,pos,ns,0.00491871,0.00177486,2.771323019,0.005920198,pos,ns,2.227663793,-0.0000775,0.000061,-1.269769682,0.20511901,neg,ns,0.060763101,Id3,Id3_Promoter,4,136140484,136140533,136140484,136140485,50,-,CGAGGAAAGGTTGCCTGGGACACGCATCCCTGTGTGAACGCATGACGTCC,Promoter (3-4kb),4,136143497,136145392,1896,1,Id3-201,-3013,Id3-201;Id3-203;Id3-202,Id3;Id3;Id3,-2964;-3331;-4441,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,9,9,15903,ENSMUSG00000007872,conserved gene and region,4,136140358,136140543,186,*,186,17,0.661290323,0.836065574,0.09139785,1.32E-12,CpGisland,TRUE,NA,NRS
19804,cg23970709,-0.000064,0.0000102,-6.265596123,1.24E-09,loss,yes,0.0000159,0.0000173,0.917152595,0.359775646,pos,ns,-0.006983137,0.005080189,-1.374582022,0.170253874,neg,ns,0.768902997,0.000220873,0.000174707,1.264245605,0.207091612,pos,ns,0.947871651,Plekhh3,Plekhh3_Exon,11,101164013,101164062,101164013,101164014,50,+,CGTGCTCAGCTCCAGAACGTCATACCGAGCAGCGCCGAACCCCGGACACT,"Exon (Plekhh3-204/Plekhh3, exon 4 of 6)",11,101162679,101165620,2942,2,Plekhh3-204,1558,Plekhh3-204;Plekhh3-203;Plekhh3-201;Plekhh3-206;Plekhh3-205;Plekhh3-202;Tubg2-201,Plekhh3;Plekhh3;Plekhh3;Plekhh3;Plekhh3;Plekhh3;Tubg2,0;0;0;0;1262;6292;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,217198,ENSMUSG00000035172,conserved gene and region,11,101164013,101164068,56,*,56,8,0.678571429,1.298550725,0.142857143,0.000000123,CpGisland,TRUE,U3,Pr-B
951,cg02648117,-4.55E-08,0.00000319,-0.014244529,0.988644058,loss,ns,-0.00000497,0.00000542,-0.917127074,0.359788997,neg,ns,-0.001088041,0.001588451,-0.684969815,0.493874794,neg,ns,0.306383138,0.0000383,0.0000546,0.701329904,0.48362329,pos,ns,0.964713293,Taf3,Taf3_Intron,2,9958334,9958383,9958382,9958383,50,+,GACAACATCTCCTATTTTCTCTCCTCCTCAGATACAATAAATTGCTATCG,"Intron (Taf3-201/Taf3, intron 2 of 6)",2,9914552,10048596,134045,2,Taf3-201,90213,Taf3-201;Taf3-204,Taf3;Taf3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,7,209361,ENSMUSG00000025782,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19860,cg15443205,-0.00000561,0.00000522,-1.074940771,0.28323718,loss,ns,0.00000814,0.00000887,0.917058324,0.359824962,pos,ns,-0.003565871,0.002599733,-1.371629517,0.171170707,neg,ns,0.766570555,0.000117275,0.0000894,1.311729549,0.190581993,pos,ns,0.077516862,Cycs-ps2,Cycs-ps2_Intergenic_downstream,5,101323427,101323476,101323475,101323476,50,-,TCAGAGATAATGTTATGATTCGCTGGACCTGAGGGGGCTTTGATGACACG,Distal Intergenic,5,101305578,101305869,292,1,Cycs-ps2-201,17898,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,10,13065,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4417,cg06582198,0.0000257,0.00000375,6.843530181,4.14E-11,gain,yes,-0.00000585,0.00000638,-0.917039361,0.359834883,neg,ns,0.009870544,0.001868782,5.281806316,0.000000241,pos,ns,6.617378259,-0.00029103,0.0000643,-4.528429683,0.00000849,neg,ns,0.921262355,Gtf3c4,Gtf3c4_Exon,2,28835162,28835211,28835162,28835163,50,-,CGATTGTCCATGGTCAGTGCTGCCAAGAGGCACCTGCCATTAGCATCGCA,"Exon (Gtf3c4-204/Gtf3c4, exon 3 of 6)",2,28822299,28840360,18062,2,Gtf3c4-204,5149,Gtf3c4-204;Gtf3c4-201;Gtf3c4-203;Gtf3c4-202,Gtf3c4;Gtf3c4;Gtf3c4;Gtf3c4,0;0;0;5141,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,269252,ENSMUSG00000035666,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7360,cg00152260,0.0000133,0.00000376,3.530486978,0.000477729,gain,ns,-0.00000586,0.00000639,-0.916991984,0.359859669,neg,ns,0.001004374,0.001873194,0.536182475,0.592216968,pos,ns,0.227519154,-0.000108824,0.0000644,-1.689318719,0.092163801,neg,ns,0.080054085,Pou4f3,Pou4f3_fiveUTR,18,42395036,42395085,42395036,42395037,50,+,CGGTTGCTTGAAAATGTGTTTTAATCCTGTGTTGACAGTATTCCCTACTG,Promoter (<=1kb),18,42395075,42397249,2175,1,Pou4f3-202,0,Pou4f3-201;Pou4f3-202,Pou4f3;Pou4f3,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,7,17,18998,ENSMUSG00000024497,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
811,cg02286588,-0.000012,0.00000538,-2.224877383,0.026809,loss,ns,0.00000838,0.00000914,0.91696149,0.359875624,pos,ns,0.001806095,0.002678906,0.674191238,0.500692158,pos,ns,0.300429211,-0.000147006,0.0000921,-1.595679949,0.111579176,neg,ns,0.888759748,Hnrnpul2,Hnrnpul2_Exon,19,8826023,8826072,8826071,8826072,50,-,GTTCAGCAAGCCTCCCAGTGCCTTAGTAAGCTGGTCCAGATTGCTTCCCG,"Exon (Hnrnpul2-201/Hnrnpul2, exon 9 of 14)",19,8820010,8834143,14134,1,Hnrnpul2-201,6013,Gm50139-201;Hnrnpul2-201;Hnrnpul2-202,Gm50139;Hnrnpul2;Hnrnpul2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,68693,ENSMUSG00000071659,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24820,cg16717607,0.0000111,0.00000618,1.793101345,0.073931439,gain,ns,-0.00000963,0.0000105,-0.91692851,0.359892879,neg,ns,-0.000162598,0.003076262,-0.052855862,0.957880796,neg,ns,0.018688533,0.00000793,0.000105792,0.074986479,0.940273836,pos,ns,0.944813876,Phc2,Phc2_Exon,4,128711081,128711130,128711081,128711082,50,+,CGTCGCTACTGTGCAGCCTGAGCTCGGCACTGGCTCCCCCGCCCGGCCCC,"Exon (Phc2-201/Phc2, exon 6 of 15)",4,128654702,128752881,98180,1,Phc2-201,56379,Phc2-201;Phc2-207;Phc2-203;Phc2-212,Phc2;Phc2;Phc2;Phc2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,13,54383,ENSMUSG00000028796,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21445,cg01878181,-0.0000291,0.0000109,-2.675491994,0.007858332,loss,ns,0.0000169,0.0000185,0.916861924,0.359927719,pos,ns,-0.010311891,0.005415532,-1.904132535,0.057818583,neg,ns,1.237932554,-0.0000949,0.00018624,-0.509666675,0.610647636,neg,ns,0.589216743,Gm9006,Gm9006_Intron,12,107778381,107778430,107778429,107778430,50,-,ATTGCCAAGTGATGTTCACTAATGTATAATTGAGCACCATGCAAATTTCG,"Intron (Gm15208-201/Gm15208-201, intron 1 of 1)",12,107613000,107613840,841,1,Gm9006-201,165430,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,4,108167974,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8928,cg23402444,-0.00000573,0.0000069,-0.829670834,0.40736334,loss,ns,0.0000108,0.0000117,0.916791669,0.359964481,pos,ns,-0.002178299,0.003436209,-0.633925049,0.526597203,neg,ns,0.278521452,-0.0000157,0.000118171,-0.132682139,0.89453085,neg,ns,0.081156287,Psd,Psd_fiveUTR,19,46326550,46326599,46326550,46326551,50,-,CGTGTCCCTAGGAGGCTGCCACATGACCTGTTACATGCCACACGCGCTCC,Promoter (<=1kb),19,46312087,46327156,15070,2,Psd-201,557,Cuedc2-203;Cuedc2-201;Cuedc2-202;Cuedc2-204;Cuedc2-205;Cuedc2-206;Cuedc2-211;Cuedc2-213;Cuedc2-208;Cuedc2-214;Cuedc2-212;Fbxl15-201;Fbxl15-202;Psd-201;Psd-202;Psd-210;Psd-205;Psd-212;Psd-207;Psd-213;Psd-203;Psd-204;Psd-206;Psd-209,Cuedc2;Cuedc2;Cuedc2;Cuedc2;Cuedc2;Cuedc2;Cuedc2;Cuedc2;Cuedc2;Cuedc2;Cuedc2;Fbxl15;Fbxl15;Psd;Psd;Psd;Psd;Psd;Psd;Psd;Psd;Psd;Psd;Psd,0;0;0;0;0;0;0;5457;12027;6180;6242;-1585;-1588;0;0;0;-964;-2491;0;-44;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,6,73728,ENSMUSG00000037126,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
1441,cg27652147,-0.0000148,0.00000516,-2.87739992,0.00428797,loss,ns,-0.00000803,0.00000876,-0.916734831,0.359994224,neg,ns,0.001477145,0.002566878,0.575463829,0.565395114,pos,ns,0.247647949,-0.0000664,0.0000883,-0.752434925,0.452360505,neg,ns,0.9648036,Mycn,Mycn_threeUTR,12,12936500,12936549,12936548,12936549,50,-,GAGGTATTATTACAGTACTTAGGTATGAACTTCCAGTCTAATACTGGCCG,3' UTR,12,12936093,12941914,5822,2,Mycn-201,5365,Mycn-201;Mycn-202;Mycn-203,Mycn;Mycn;Mycn,0;0;5276,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,3,18109,ENSMUSG00000037169,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16256,cg07294852,0.0000251,0.000014,1.79127169,0.0742251,gain,ns,0.0000218,0.0000238,0.916730278,0.359996607,pos,ns,0.003879715,0.006972664,0.556417859,0.578326654,pos,ns,0.237826791,0.0000251,0.000239789,0.104879342,0.916539377,pos,ns,0.556866364,Mrm1,Mrm1_Intergenic_downstream,11,84672973,84673022,84672973,84672974,50,-,CGAGGACAGAATTCATCTTCCCAGCTGACAAGCCCCGTTAATTAACGACT,Distal Intergenic,11,84814743,84815390,648,2,Mrm1-203,142417,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,37,42,217038,ENSMUSG00000018405,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3689,cg08224761,0.00000397,0.00000938,0.422838736,0.672706082,gain,ns,0.0000146,0.0000159,0.916653391,0.360036844,pos,ns,0.014321433,0.00466992,3.066740736,0.002354747,pos,ns,2.62805572,-0.000344211,0.000160598,-2.143308515,0.032866356,neg,ns,0.254924572,Nsmf,Nsmf_Exon,2,25055004,25055053,25055052,25055053,50,-,CCGAGCGTTTGGAGAGTACCTGTCCCAGAGTCACCCTGAGAACCGCAACG,Promoter (<=1kb),2,25054355,25062881,8527,1,Nsmf-203,649,Nsmf-203;Nsmf-216;Nsmf-207;Nsmf-201;Nsmf-214;Nsmf-218;Nsmf-202;Nsmf-204;Nsmf-209;Nsmf-206;Nsmf-213;Nsmf-215;Nsmf-205;Nsmf-211;Nsmf-210;Nsmf-212;Pnpla7-201;Pnpla7-204;Pnpla7-203;Pnpla7-214;Pnpla7-215;Pnpla7-202;Pnpla7-205;Pnpla7-208,Nsmf;Nsmf;Nsmf;Nsmf;Nsmf;Nsmf;Nsmf;Nsmf;Nsmf;Nsmf;Nsmf;Nsmf;Nsmf;Nsmf;Nsmf;Nsmf;Pnpla7;Pnpla7;Pnpla7;Pnpla7;Pnpla7;Pnpla7;Pnpla7;Pnpla7,0;0;0;0;0;0;0;0;0;0;0;0;0;-827;-2094;-2523;78971;78931;15498;3652;3338;3283;3096;1850,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,56876,ENSMUSG00000006476,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U4,Pr-F
2271,cg04740794,0.00000138,0.000000955,1.443992764,0.149750872,gain,ns,-0.00000149,0.00000162,-0.916475028,0.360130198,neg,ns,0.001021045,0.00047553,2.147173512,0.032554782,pos,ns,1.487385207,-0.0000261,0.0000164,-1.596781517,0.11133325,neg,ns,0.972318192,Meis1,Meis1_threeUTR,11,18881741,18881790,18881789,18881790,50,+,TCCTCCATGCATCATCACTGTTGGGTGGTGAGGGTGTCCAGGAATGTACG,3' UTR,11,18879817,19018985,139169,2,Meis1-206,137195,Meis1-206;Meis1-202;Meis1-209;Meis1-201;Meis1-203;Meis1-208;Meis1-207,Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,12,88,17268,ENSMUSG00000020160,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13503,cg20933244,-2.93E-08,0.00000214,-0.013676121,0.989097171,loss,ns,-0.00000334,0.00000364,-0.916313786,0.360214603,neg,ns,-0.001033955,0.001066867,-0.969150475,0.333225635,neg,ns,0.477261596,-0.0000431,0.0000367,-1.175966073,0.240510731,neg,ns,0.958994502,Bicc1,Bicc1_Exon,10,70956129,70956178,70956177,70956178,50,-,GATATTGCCTTGCAAGACAGACAGACTCAATGGTGCCCTGGAGGTAGACG,"Exon (Bicc1-203/Bicc1, exon 8 of 21)",10,70922832,71159700,236869,2,Bicc1-203,203522,Bicc1-203;Bicc1-202;Bicc1-201,Bicc1;Bicc1;Bicc1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,83675,ENSMUSG00000014329,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7941,cg02520735,-0.0000301,0.00000668,-4.507220028,0.00000932,loss,ns,0.0000104,0.0000113,0.916214594,0.360266534,pos,ns,0.006568186,0.003324295,1.975813415,0.049062399,pos,ns,1.309251217,-0.000366806,0.000114322,-3.208527537,0.001473766,neg,ns,0.821064346,Pax5,Pax5_Exon,4,44645612,44645661,44645612,44645613,50,-,CGGTCCAGCACCTCCAGCTGCTGCTGTGTGAACAAGTCTCCCCGCATCTG,"Exon (Pax5-201/Pax5, exon 6 of 10)",4,44524757,44710487,185731,2,Pax5-201,64826,Pax5-201;Pax5-202;Pax5-203;Pax5-204;Pax5-205;Pax5-207;Pax5-206;Pax5-209;Pax5-210;Pax5-212;Pax5-213;Pax5-214;Pax5-215;Pax5-220;Pax5-211,Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,45,18507,ENSMUSG00000014030,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4955,cg02810085,-0.0000428,0.00000983,-4.352379833,0.0000183,loss,ns,-0.0000153,0.0000167,-0.916201097,0.3602736,neg,ns,-0.020804472,0.004894704,-4.250404413,0.0000283,neg,ns,4.548723418,0.000327345,0.000168328,1.944682856,0.052717302,pos,ns,0.795280255,Gm13426,Gm13426_Intergenic_downstream,2,31547821,31547870,31547821,31547822,50,-,CGTAATTTTCTCTGTGGGGCTTTGCGGTAATTGAGCCATTTGGATAAAAA,Distal Intergenic,2,31551901,31552695,795,2,Gm13426-201,4874,Gm13426-201,Gm13426,4825,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,3,100416172,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1401,cg09629046,-0.00000097,0.00000435,-0.22311295,0.823594543,loss,ns,0.00000677,0.00000739,0.916019519,0.360368676,pos,ns,0.005122773,0.002164392,2.366841833,0.018554832,pos,ns,1.731542964,-0.000129753,0.0000744,-1.743207029,0.082288912,neg,ns,0.930372611,Med14,Med14_Exon,X,12689307,12689356,12689307,12689308,50,-,CGATTTCCATGTATGGACTCACCATGTGGACTAGCAAAACTGGCCCCTGG,"Exon (Med14-202/Med14, exon 24 of 31)",20,12675369,12762073,86705,2,Med14-202,72717,Med14-202;Med14-203;Med14-204,Med14;Med14;Med14,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,7,26896,ENSMUSG00000064127,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
370,cg05234151,-0.00000794,0.0000038,-2.090136645,0.037420045,loss,ns,-0.00000591,0.00000646,-0.915903022,0.360429683,neg,ns,-0.002030376,0.001891548,-1.073393615,0.283929378,neg,ns,0.546789669,-0.0000135,0.0000651,-0.207329279,0.835888836,neg,ns,0.950474675,Zfhx4,Zfhx4_Exon,3,5243787,5243836,5243787,5243788,50,+,CGTGTGGCTATAAACCCTTCCGTTGTGAGGTTTGTAACTACTCTACCACT,"Exon (Zfhx4-203/Zfhx4, exon 2 of 11)",3,5218526,5413165,194640,1,Zfhx4-203,25261,Zfhx4-203;Zfhx4-202;Zfhx4-201;Zfhx4-204;Zfhx4-205,Zfhx4;Zfhx4;Zfhx4;Zfhx4;Zfhx4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,23,77,80892,ENSMUSG00000025255,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27391,cg23087020,-0.00000686,0.00000169,-4.054077577,0.0000637,loss,ns,0.00000263,0.00000287,0.91588796,0.360437571,pos,ns,0.000172638,0.000842114,0.205005204,0.8377026,pos,ns,0.076910137,-0.0000323,0.000029,-1.116128749,0.265231421,neg,ns,0.0318776,Pou2f1,Pou2f1_Promoter,1,166002447,166002496,166002495,166002496,50,+,CCCGCCGTTAATTATAATAATCCTGAGTACTAATAAATTATGCTAAGTCG,Promoter (<=1kb),1,165865154,166002678,137525,2,Pou2f1-208,182,Pou2f1-208;Pou2f1-206;Pou2f1-216;Pou2f1-209;Pou2f1-201;Pou2f1-215;Pou2f1-214;Pou2f1-211;Pou2f1-212,Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,3,18,18986,ENSMUSG00000026565,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
26532,cg05734643,0.000000345,0.00000269,0.128202183,0.898072101,gain,ns,-0.00000419,0.00000458,-0.915641474,0.360566674,neg,ns,-0.003033441,0.001340574,-2.262792344,0.024340142,neg,ns,1.613676895,0.000128201,0.0000461,2.780794586,0.005754351,pos,ns,0.944962873,Casz1,Casz1_Intron,4,148888370,148888419,148888418,148888419,50,-,TTTTGACTTAATGAAGTGCAACTGCTGAGGGATTTGGGTTCAGCGCTCCG,"Intron (Casz1-201/Casz1, intron 2 of 15)",4,148804429,148945129,140701,1,Casz1-201,83941,Casz1-201;Casz1-202;Casz1-205,Casz1;Casz1;Casz1,0;0;-962,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,94,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20841,cg05187361,-0.00000574,0.00000316,-1.81517067,0.070463901,loss,ns,-0.00000492,0.00000537,-0.915544636,0.360617403,neg,ns,-0.000244204,0.001573179,-0.155229783,0.876741193,neg,ns,0.057128588,-0.00000861,0.0000541,-0.159176919,0.873633141,neg,ns,0.900892419,Arfip2,Arfip2_threeUTR,7,105637895,105637944,105637943,105637944,50,+,AGGTGGGCTGTCAGTGCCCGGCCCAGCTGCAGGACACTCTCATACTTGCG,Promoter (<=1kb),7,105635624,105637902,2279,2,Arfip2-205,0,Arfip2-206;Arfip2-210;Arfip2-202;Arfip2-201;Arfip2-205;Arfip2-209;Arfip2-213;Arfip2-212;Arfip2-214;Arfip2-208;Arfip2-203;Arfip2-207;Arfip2-211;Arfip2-204;Gm45799-201;Gm45799-203;Gm45799-204;Gm45799-205;Gm45799-202;Gm45799-208;Gm45799-207;Gm45799-206;Timm10b-203;Timm10b-201;Timm10b-211;Timm10b-208;Timm10b-207;Timm10b-210;Timm10b-202;Timm10b-206;Timm10b-204;Timm10b-205;Timm10b-209;Trim3-203;Trim3-201;Trim3-202;Trim3-205;Trim3-207;Trim3-204,Arfip2;Arfip2;Arfip2;Arfip2;Arfip2;Arfip2;Arfip2;Arfip2;Arfip2;Arfip2;Arfip2;Arfip2;Arfip2;Arfip2;Gm45799;Gm45799;Gm45799;Gm45799;Gm45799;Gm45799;Gm45799;Gm45799;Timm10b;Timm10b;Timm10b;Timm10b;Timm10b;Timm10b;Timm10b;Timm10b;Timm10b;Timm10b;Timm10b;Trim3;Trim3;Trim3;Trim3;Trim3;Trim3,0;0;0;0;0;0;0;0;0;0;0;0;0;2396;-2608;-2618;0;-2620;-2626;-2633;-3076;-3239;-2112;-2504;-2607;-2620;-2623;-2627;-2627;-2645;-2646;-2727;-3173;0;0;0;0;-4370;-4324,TRUE,FALSE,TRUE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,4,76932,ENSMUSG00000030881,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5731,cg15094970,-0.000021,0.0000115,-1.829664412,0.068260415,loss,ns,0.0000178,0.0000195,0.915346656,0.36072113,pos,ns,-0.0000889,0.005705788,-0.015580541,0.987579052,neg,ns,0.005428131,0.0000939,0.000196222,0.478326694,0.632754853,pos,ns,0.189727896,Sox2,Sox2_Exon,3,34638292,34638341,34638340,34638341,50,+,TCTCTCTCTCTTTTAAAAAATCAGCCATTTGGGGTTTTAAGCCATAAACG,"Exon (Sox2ot-208/Sox2ot-208, exon 1 of 3)",3,34650405,34652461,2057,1,Sox2-201,-12064,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,62,20674,ENSMUSG00000074637,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
21843,cg01938132,0.00000687,0.00000513,1.338245215,0.181797245,gain,ns,0.00000798,0.00000872,0.915298001,0.360746625,pos,ns,-0.000628426,0.002554021,-0.24605372,0.805803483,neg,ns,0.09377086,0.0000393,0.0000878,0.447045892,0.655154096,pos,ns,0.80126568,Gm1943,Gm1943_Intron,8,109249468,109249517,109249516,109249517,50,+,ATTGCTGTCTTTTGTAATCCATCCATGCAGTCGCACCAGAGCGATTAACG,"Intron (D030068K23Rik-202/D030068K23Rik-202, intron 8 of 9)",8,109340691,109340864,174,2,Gm1943-201,91347,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,28,384864,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23335,cg03076785,-0.00000194,0.00000542,-0.357558945,0.720916717,loss,ns,0.00000843,0.00000921,0.915297787,0.360746737,pos,ns,0.010986347,0.002698547,4.071208934,0.0000594,pos,ns,4.226038136,-0.000342458,0.0000928,-3.69016974,0.00026465,neg,ns,0.865368632,Ipo13,Ipo13_Intron,4,117897621,117897670,117897621,117897622,50,+,CGGAAACAGATGAAGAAACTCTATTCAACTGAACAGAAAAAAAATTTGTC,"Intron (Ipo13-202/Ipo13, intron 2 of 6)",4,117894486,117900662,6177,2,Ipo13-202,2992,Ipo13-202;Ipo13-201;Ipo13-206;Ipo13-204;Ipo13-203;Ipo13-205,Ipo13;Ipo13;Ipo13;Ipo13;Ipo13;Ipo13,0;0;-2507;0;0;6197,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,3,230673,ENSMUSG00000033365,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15555,cg00143792,0.000000112,0.000000614,0.183229916,0.854737403,gain,ns,0.000000954,0.00000104,0.915252362,0.36077054,pos,ns,-0.000445637,0.000305448,-1.458963512,0.145587634,neg,ns,0.836875511,0.0000163,0.0000105,1.548761447,0.122459331,pos,ns,0.985854898,Zc3h7b,Zc3h7b_Exon,15,81780423,81780472,81780471,81780472,50,-,CTGTAAGTACGGGGATAACTGCACCTTCGCCTACCATCAGGAGGAGATCG,"Exon (Zc3h7b-202/Zc3h7b, exon 13 of 15)",15,81745057,81784444,39388,1,Zc3h7b-202,35366,Zc3h7b-202;Zc3h7b-201;Zc3h7b-203;Zc3h7b-206;Zc3h7b-204,Zc3h7b;Zc3h7b;Zc3h7b;Zc3h7b;Zc3h7b,0;0;0;0;1756,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,5,20286,ENSMUSG00000022390,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16895,cg10880576,-0.00000389,0.00000238,-1.633116591,0.103459696,loss,ns,0.0000037,0.00000405,0.915245494,0.360774139,pos,ns,0.000934767,0.00118566,0.78839399,0.431068752,pos,ns,0.365453458,-0.0000511,0.0000408,-1.252046973,0.211496571,neg,ns,0.933226863,1700113H08Rik,1700113H08Rik_Intron,10,87154124,87154173,87154172,87154173,50,-,GCTTTTGCTATTCATAAATTTTAGGGCCTTAGATATTAGATACACTTACG,"Intron (1700113H08Rik-202/1700113H08Rik, intron 3 of 4)",10,87058045,87230589,172545,1,1700113H08Rik-202,96079,1700113H08Rik-202;1700113H08Rik-201,1700113H08Rik;1700113H08Rik,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,6,76640,ENSMUSG00000047129,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2432,cg19144254,0.00000626,0.00000346,1.808838867,0.071444762,gain,ns,-0.00000538,0.00000588,-0.915214215,0.36079053,neg,ns,0.001169433,0.001721589,0.679275272,0.497470315,pos,ns,0.303232829,-0.0000464,0.0000592,-0.783971027,0.433655708,neg,ns,0.065957739,Ptf1a,Ptf1a_Intron,2,19430782,19430831,19430830,19430831,50,-,ATGTTCATTGAGCATTTTGCCTAATTGTGTCTGTCTCTGAAAGGGCAGCG,"Intron (Gm13344-201/Gm13344-201, intron 1 of 1)",2,19445663,19447501,1839,1,Ptf1a-201,-14881,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,21,19213,ENSMUSG00000026735,conserved gene but different region,2,19430830,19431029,200,*,200,27,0.685,1.158301158,0.135,9.71E-25,CpGisland,TRUE,U13,Hc-P
6714,cg18806766,0.000298624,0.0000266,11.22054694,9.51E-25,gain,yes,0.0000414,0.0000452,0.915177227,0.360809913,pos,ns,0.107612033,0.013246065,8.124075483,1.08E-14,pos,yes,13.96574199,-0.003675948,0.000455531,-8.069588107,1.57E-14,neg,yes,0.642579915,Dennd1a,Dennd1a_Exon,2,38159795,38159844,38159795,38159796,50,-,CGCATTCCGAACCTGGTCACTGTAGTCCTCCGGGAATTGCCTCTGCACCT,"Exon (Dennd1a-201/Dennd1a, exon 3 of 22)",2,37798991,38287375,488385,2,Dennd1a-201,127531,Dennd1a-201;Dennd1a-207;Dennd1a-210;Dennd1a-204;Dennd1a-202;Dennd1a-209;Dennd1a-208;Dennd1a-205;Dennd1a-211,Dennd1a;Dennd1a;Dennd1a;Dennd1a;Dennd1a;Dennd1a;Dennd1a;Dennd1a;Dennd1a,0;0;0;0;0;0;0;0;7975,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,46,227801,ENSMUSG00000035392,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26658,cg19549056,-0.0000115,0.0000141,-0.818416105,0.413748282,loss,ns,0.0000219,0.0000239,0.915096077,0.360852442,pos,ns,-0.009716846,0.007010119,-1.386117089,0.166707348,neg,ns,0.778045257,-0.000280713,0.000241077,-1.164412085,0.245152371,neg,ns,0.64798842,Bicd1,Bicd1_threeUTR,6,149520336,149520385,149520384,149520385,50,+,CTTGGATCTCCTGCAAGACAATTTTCACCTTCCCTTTGTGATCAGAGCCG,3' UTR,6,149408984,149563329,154346,1,Bicd1-202,111352,Bicd1-202;Bicd1-203;Bicd1-201;Bicd1-207;Bicd1-208;Bicd1-206,Bicd1;Bicd1;Bicd1;Bicd1;Bicd1;Bicd1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,6,12121,ENSMUSG00000003452,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20731,cg12772040,0.000000873,0.00000106,0.821158791,0.412186863,gain,ns,-0.00000165,0.00000181,-0.914978692,0.360913966,neg,ns,-0.000111428,0.000529147,-0.210579727,0.833353579,neg,ns,0.079170695,0.00000404,0.0000182,0.222084033,0.824394702,pos,ns,0.972567899,Dicer1,Dicer1_Exon,12,104694686,104694735,104694734,104694735,50,+,TGCTTGGTTATGAGGTAGTCCAAAATCGCATCTCCCAGGAATTCTAAGCG,"Exon (Dicer1-201/Dicer1, exon 24 of 27)",12,104687742,104751952,64211,2,Dicer1-201,57217,Dicer1-201;Dicer1-206;Dicer1-204;Dicer1-205,Dicer1;Dicer1;Dicer1;Dicer1,0;0;0;5767,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,12,192119,ENSMUSG00000041415,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8736,cg03590843,-0.00000688,0.00000237,-2.906537492,0.003917861,loss,ns,-0.00000368,0.00000402,-0.914962865,0.360922262,neg,ns,-0.001911362,0.00117738,-1.623402725,0.105519739,neg,ns,0.976666292,-0.00000579,0.0000405,-0.142928721,0.886439331,neg,ns,0.962551024,Tmem63b,Tmem63b_Exon,17,45661468,45661517,45661516,45661517,50,+,CACTGAGGTATTTGAAGTGTCCAAAGCAGACGTGGCAGAGACAGATGACG,"Exon (Tmem63b-201/Tmem63b, exon 22 of 24)",17,45660171,45686259,26089,2,Tmem63b-201,24742,Capn11-201;Capn11-202;Tmem63b-201;Tmem63b-208;Tmem63b-203,Capn11;Capn11;Tmem63b;Tmem63b;Tmem63b,-2143;-2171;0;0;4937,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,12,224807,ENSMUSG00000036026,conserved gene and region,17,45661498,45661625,128,*,128,9,0.59375,0.825806452,0.0703125,0.00000707,CpGisland,TRUE,NA,NRS
2639,cg14086518,-0.0000143,0.00000273,-5.234504662,0.000000306,loss,yes,0.00000425,0.00000464,0.914862379,0.360974935,pos,ns,0.000316925,0.001359933,0.233044709,0.815880487,pos,ns,0.088373454,0.0000173,0.0000468,0.369790558,0.711791043,pos,ns,0.929953091,Camk2g,Camk2g_Exon,14,20771010,20771059,20771058,20771059,50,-,TCAAACACGAGGTAGTGAAACCCTTCTTCAGAAATACTGTCATGGAGGCG,"Exon (Camk2g-203/Camk2g, exon 4 of 19)",14,20734875,20794051,59177,2,Camk2g-203,22992,Camk2g-203;Camk2g-201;Camk2g-202;Camk2g-217;Camk2g-214;Camk2g-216;Camk2g-215;Camk2g-207;Camk2g-208,Camk2g;Camk2g;Camk2g;Camk2g;Camk2g;Camk2g;Camk2g;Camk2g;Camk2g,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,15,12325,ENSMUSG00000021820,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27364,cg06536985,0.0000193,0.00000453,4.267533949,0.0000263,gain,ns,0.00000705,0.0000077,0.914729561,0.361044564,pos,ns,0.005900468,0.002256599,2.614761383,0.009365343,pos,ns,2.028476303,-0.000126586,0.0000776,-1.631176384,0.103868573,neg,ns,0.0644838,Glra2,Glra2_Promoter,X,165327452,165327501,165327500,165327501,50,+,AGCTCTGAAGTGCGCATGTTTCCTTTTTCAGTTGCTTGGGGCGGGGGTCG,Promoter (<=1kb),20,165129017,165327393,198377,2,Glra2-201,-59,Glra2-201,Glra2,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,5,237213,ENSMUSG00000018589,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18247,cg09019215,0.0000262,0.00000654,4.00991014,0.0000762,gain,ns,-0.0000102,0.0000111,-0.914727497,0.361045646,neg,ns,0.002366597,0.003254181,0.727248279,0.467622729,pos,ns,0.330104388,0.0000753,0.000111911,0.672733867,0.501617765,pos,ns,0.167043916,Ap3b1,Ap3b1_Intergenic_downstream,13,94595832,94595881,94595880,94595881,50,-,CAGCACGGAGCATGCCGTTTGGTTCAGAAAGGAGTCATTTTGCACACTCG,Distal Intergenic,13,94542303,94547867,5565,1,Ap3b1-202,53578,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,33,55,11774,ENSMUSG00000021686,mapped to different genes,13,94595837,94596306,470,*,470,35,0.640425532,0.726333451,0.074468085,2.54E-22,CpGisland,TRUE,U13,Hc-P
17457,cg17095500,0.00000656,0.0000043,1.525135192,0.128244914,gain,ns,-0.00000668,0.0000073,-0.914708122,0.361055803,neg,ns,-0.003608014,0.00213931,-1.68653206,0.092699401,neg,ns,1.03292307,0.0000632,0.0000736,0.859015362,0.390995782,pos,ns,0.927190285,Nrxn3,Nrxn3_threeUTR,12,90331788,90331837,90331836,90331837,50,+,ATAAGAGTCTTTCCACTTCAATCTTCGAAGGTGGCTACAAAGCACATGCG,3' UTR,12,88722986,90332878,1609893,1,Nrxn3-213,1608802,Nrxn3-213;Nrxn3-208;Nrxn3-205;Nrxn3-201;Nrxn3-210;Nrxn3-214;Nrxn3-203;Nrxn3-202,Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,14,39,18191,ENSMUSG00000066392,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
255,cg03261383,0.00000969,0.00000278,3.484169408,0.000564771,gain,ns,-0.00000432,0.00000473,-0.914675376,0.361072972,neg,ns,0.003421537,0.001384311,2.471653697,0.013985896,pos,ns,1.854309706,-0.00012282,0.0000476,-2.579911247,0.010342681,neg,ns,0.057049257,Shisa7,Shisa7_Exon,7,4836408,4836457,4836456,4836457,50,-,AGGAGCCGGTGCTGCAGTTGAAGGTGGCGTCGTACTGGCCCATGACATCG,"Exon (Shisa7-201/Shisa7, exon 2 of 6)",7,4825553,4844696,19144,2,Shisa7-201,8239,Shisa7-202;Shisa7-201;Shisa7-203;Shisa7-204,Shisa7;Shisa7;Shisa7;Shisa7,-234;0;0;-1893,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,232813,ENSMUSG00000053550,conserved gene and region,7,4836051,4836869,819,*,819,85,0.715506716,0.8125,0.103785104,5.13E-66,CpGisland,TRUE,U3,Pr-B
26334,cg05928260,0.00000903,0.00000532,1.697382125,0.090628062,gain,ns,0.00000826,0.00000903,0.914569722,0.361128368,pos,ns,-0.001939522,0.002646594,-0.732837026,0.464211593,neg,ns,0.333284018,0.00000791,0.000091,0.086907416,0.930801213,pos,ns,0.745955953,Kiz,Kiz_Intergenic_upstream,2,146824077,146824126,146824077,146824078,50,+,CGCCGGATCAACATATTATTGCCATGTTCTGGGACTGAATTGTTTACAAG,Distal Intergenic,2,146855864,146970097,114234,1,Kiz-201,-31738,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,29,228730,ENSMUSG00000074749,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11713,cg15697185,0.0000712,0.00000992,7.182428268,5.11E-12,gain,yes,-0.0000154,0.0000168,-0.914302495,0.361268505,neg,ns,0.009448777,0.004935885,1.914302315,0.056501966,pos,ns,1.247936438,-0.000335599,0.000169745,-1.977079073,0.048918441,neg,ns,0.071340066,Gas1,Gas1_Exon,13,60177436,60177485,60177484,60177485,50,-,CCCTCATTATGCATGCATGGAAAAGCAAACAAACAAAAACATTAGCAACG,Promoter (<=1kb),13,60174405,60177365,2961,2,Gas1-201,-120,Gas1-201;Gas1-202,Gas1;Gas1,-71;-495,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,10,14451,ENSMUSG00000052957,conserved gene but different region,13,60177484,60177591,108,*,108,13,0.731481482,1.04,0.12037037,2.57E-11,CpGisland,TRUE,U3,Pr-B
15703,cg02523045,-0.0000437,0.0000113,-3.880342522,0.000127444,loss,ns,0.0000175,0.0000191,0.914292952,0.36127351,pos,ns,0.019591996,0.005601604,3.497568846,0.000538174,pos,ns,3.269077456,-0.000956074,0.000192639,-4.963040056,0.00000115,neg,yes,0.777877279,Phip,Phip_threeUTR,9,82915955,82916004,82916003,82916004,50,-,TTTTTACCTGATAATTGTTTTCTGTTTTCCAGTTCCATTAATCCAGAACG,3' UTR,9,82866159,82975516,109358,2,Phip-201,59512,Phip-201;Phip-207;Phip-202;Phip-204;Phip-214;Phip-203,Phip;Phip;Phip;Phip;Phip;Phip,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,13,83946,ENSMUSG00000032253,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12285,cg19560915,-0.0000189,0.00000568,-3.335234717,0.000955794,loss,ns,-0.00000882,0.00000964,-0.914246608,0.361297818,neg,ns,-0.002719472,0.002825407,-0.962506354,0.336545487,neg,ns,0.472956229,-0.0000328,0.0000972,-0.337932528,0.735642763,neg,ns,0.934281811,Fign,Fign_Intergenic_downstream,2,63850097,63850146,63850097,63850098,50,+,CGGAAATTTAGAGAATTAATATCATAATGAAGACGGGAGTACCCATTAGG,Distal Intergenic,2,63980447,64097988,117542,2,Fign-202,247842,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,28,84,60344,ENSMUSG00000075324,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20904,cg02770983,0.0000614,0.00000806,7.618714365,3.14E-13,gain,yes,0.0000125,0.0000137,0.914094569,0.361377568,pos,ns,0.006638669,0.004013966,1.65389282,0.099161479,pos,ns,1.003657006,0.0000614,0.00013804,0.444509293,0.656984577,pos,ns,0.20717045,Pax6,Pax6_Exon,2,105685792,105685841,105685840,105685841,50,-,CAGAGTTCTTCGCAACCTGGCTAGCGAAAAGCAACAGATGGGCGCAGACG,"Exon (Pax6-206/Pax6, exon 7 of 13)",2,105668900,105697364,28465,1,Pax6-206,16892,Pax6-206;Pax6-207;Pax6-210;Pax6-214;Pax6-208;Pax6-202;Pax6-205;Pax6-225;Pax6-204;Pax6-201;Pax6-203;Pax6-224;Pax6-219;Pax6-221;Pax6-213;Pax6-211;Pax6-222;Pax6-212;Pax6-215;Pax6-223;Pax6-209;Pax6-216,Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,31,78,18508,ENSMUSG00000027168,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
21000,cg25569617,0.00004,0.0000307,1.301485059,0.194058854,gain,ns,-0.0000477,0.0000522,-0.913804937,0.361529522,neg,ns,0.015828612,0.015304535,1.034243309,0.301828568,pos,ns,0.520239656,-0.000977635,0.000526322,-1.857486212,0.064190142,neg,ns,0.401540073,Lcat,Lcat_Exon,8,105942415,105942464,105942415,105942416,50,-,CGGTAGCACATCCAGTTCACCACATCTGGTTTGTCCAGCTTGGCTTCTAG,Promoter (<=1kb),8,105939551,105943382,3832,2,Lcat-201,918,Lcat-201;Psmb10-201;Psmb10-206;Psmb10-204;Psmb10-202;Slc12a4-202;Slc12a4-201;Slc12a4-204,Lcat;Psmb10;Psmb10;Psmb10;Psmb10;Slc12a4;Slc12a4;Slc12a4,0;-3971;-4750;-4311;-4323;23580;23633;5709,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,16816,ENSMUSG00000035237,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
15615,cg05454894,-0.000031,0.00000692,-4.47670358,0.0000107,loss,ns,-0.0000107,0.0000118,-0.913686491,0.361591676,neg,ns,-0.004738626,0.00344294,-1.376331542,0.169712348,neg,ns,0.770286557,0.0000985,0.000118402,0.83181038,0.406156263,pos,ns,0.928326549,Nfib,Nfib_threeUTR,4,82295308,82295357,82295308,82295309,50,+,CGTGCAAATTAGGATTACTGGAAAGAGTATTTTTAATTAAAATTTTAAGA,3' UTR,4,82290173,82505308,215136,2,Nfib-201,209951,Nfib-201;Nfib-203;Nfib-202;Nfib-205;Nfib-206;Nfib-204,Nfib;Nfib;Nfib;Nfib;Nfib;Nfib,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,11,66,18028,ENSMUSG00000008575,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9686,cg24577076,-0.0000185,0.00000352,-5.254622164,0.000000277,loss,yes,0.00000546,0.00000598,0.913595987,0.361639171,pos,ns,-0.004954745,0.00175096,-2.829730601,0.004962669,neg,ns,2.304284672,0.0000693,0.0000602,1.150173675,0.250958835,pos,ns,0.934946832,Slc6a5,Slc6a5_threeUTR,7,49956404,49956453,49956452,49956453,50,+,CTTTGCTTCAGCTTTTACCAGTGGGAGCCCATGACCTATGGCTCTTACCG,3' UTR,7,49910146,49963856,53711,1,Slc6a5-201,46258,Slc6a5-201;Slc6a5-204;Slc6a5-203;Slc6a5-202,Slc6a5;Slc6a5;Slc6a5;Slc6a5,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,5,104245,ENSMUSG00000039728,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2016,cg20546778,0.000000353,0.00000281,0.125587047,0.900140223,gain,ns,0.00000436,0.00000477,0.913569278,0.361653189,pos,ns,-0.000122298,0.001397624,-0.087504185,0.930327255,neg,ns,0.031364256,0.000017,0.0000481,0.354303399,0.723352399,pos,ns,0.957115434,Gdap1,Gdap1_Exon,1,17146978,17147027,17147026,17147027,50,+,CATGATGTAAGTCTGCCCTTGAGTGAGCACAATGAGCCTTGGTTTATGCG,"Exon (Gdap1-201/Gdap1, exon 2 of 6)",1,17145362,17164271,18910,1,Gdap1-201,1616,Gdap1-201;Gdap1-202;Gdap1-204,Gdap1;Gdap1;Gdap1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,14545,ENSMUSG00000025777,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9897,cg08698024,-0.00000105,0.00000503,-0.208026137,0.835345161,loss,ns,0.0000078,0.00000854,0.913480263,0.361699908,pos,ns,0.005682542,0.002501403,2.271742185,0.023787113,pos,ns,1.62365827,-0.000216485,0.000086,-2.51659012,0.012354205,neg,ns,0.91381058,Naa15,Naa15_Exon,3,51460004,51460053,51460052,51460053,50,+,ATTACCCTTAGATCATATGTGGACTTATTAAAACTAGAAGATGTACTTCG,"Exon (Naa15-205/Naa15, exon 14 of 20)",3,51415148,51476507,61360,1,Naa15-205,44856,Naa15-205;Naa15-201;Naa15-204;Naa15-207;Naa15-208,Naa15;Naa15;Naa15;Naa15;Naa15,0;0;0;0;-687,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,5,74838,ENSMUSG00000063273,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26193,cg17404915,0.00000996,0.0000014,7.139057943,6.71E-12,gain,yes,0.00000217,0.00000237,0.913380763,0.361752136,pos,ns,-0.000219948,0.000694711,-0.31660323,0.751757775,neg,ns,0.123922072,0.0000415,0.0000239,1.736850405,0.083406908,pos,ns,0.024942502,Ovol2,Ovol2_Exon,2,144332153,144332202,144332153,144332154,50,+,CGCCCTGCAACATAACGGTGTCAACAAGCTCGCTACCTGTCCGACCGGTT,Promoter (<=1kb),2,144305175,144332146,26972,2,Ovol2-201,-7,Ovol2-202;Ovol2-201;Ovol2-203,Ovol2;Ovol2;Ovol2,-458;0;-827,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,5,107586,ENSMUSG00000037279,conserved gene but different region,2,144332153,144332212,60,*,60,8,0.65,1.304347826,0.133333333,0.000000221,CpGisland,TRUE,U3,Pr-B
13866,cg24316913,-0.0000184,0.00000553,-3.325338713,0.00098915,loss,ns,0.00000858,0.00000939,0.913290233,0.361799658,pos,ns,0.000963178,0.002750873,0.350135222,0.726474991,pos,ns,0.138779331,-0.0000966,0.0000946,-1.020939266,0.308079282,neg,ns,0.844119422,Dnah6,Dnah6_Exon,6,73129255,73129304,73129303,73129304,50,-,TCACTGATGATCCATTTATGGTCTTCTGAAGTATCATTCACAGCTGCTCG,"Exon (Dnah6-201/Dnah6, exon 34 of 77)",6,73017606,73221631,204026,2,Dnah6-201,92327,Dnah6-201;Dnah6-203;Dnah6-204;Dnah6-202,Dnah6;Dnah6;Dnah6;Dnah6,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,330355,ENSMUSG00000052861,conserved gene and region,6,73129175,73129543,369,*,369,18,0.471544715,0.900854469,0.048780488,9.69E-09,CpGisland,TRUE,U15,NS
27164,cg15702218,0.00000519,0.00000305,1.701792909,0.089796785,gain,ns,-0.00000473,0.00000518,-0.913182703,0.36185611,neg,ns,-0.00033867,0.001517824,-0.223128508,0.823582445,neg,ns,0.084292919,0.0000077,0.0000522,0.14752757,0.882811525,pos,ns,0.931962958,Tnr,Tnr_Exon,1,159858258,159858307,159858258,159858259,50,+,CGGAATATGTGATCTCTTACCAGCCGACGGCCCTGGGGGGCCTCCAGCTC,"Exon (Tnr-202/Tnr, exon 5 of 23)",1,159523769,159931729,407961,1,Tnr-202,334489,Tnr-202;Tnr-201;Tnr-203,Tnr;Tnr;Tnr,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,13,21960,ENSMUSG00000015829,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15510,cg04244133,0.0000753,0.0000134,5.630788684,4.02E-08,gain,yes,0.0000207,0.0000227,0.913172995,0.361861207,pos,ns,0.022067038,0.006654887,3.315914897,0.001021919,pos,ns,2.990583707,-0.000517748,0.000228861,-2.262280277,0.02437212,neg,ns,0.450094178,Celf5,Celf5_Exon,10,81462669,81462718,81462669,81462670,50,+,CGAAACACTTGCTCTGGTTGGTAGCTCGATCCATAAACACCTTGGAGGAA,"Exon (Celf5-201/Celf5, exon 11 of 12)",10,81459227,81482709,23483,2,Celf5-201,19991,Celf5-201;Celf5-202;Celf5-204;Celf5-203;Celf5-209;Celf5-207;Celf5-206,Celf5;Celf5;Celf5;Celf5;Celf5;Celf5;Celf5,0;0;0;0;0;8089;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,3,319586,ENSMUSG00000034818,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
14184,cg10665370,0.0000635,0.00000663,9.58221591,3.22E-19,gain,yes,0.0000103,0.0000113,0.913133446,0.361881971,pos,ns,0.006883267,0.00330053,2.085503623,0.03784123,pos,ns,1.422034756,-0.000307645,0.000113505,-2.710411924,0.007094211,neg,ns,0.173950795,Gm28230,Gm28230_Intron,2,74734653,74734702,74734653,74734654,50,+,CGGGCGAGGACTGTAAATCTTTCCGGTTTATTGCTCTATGAACATATGCT,"Intron (Hoxd3-203/Hoxd3, intron 1 of 2)",2,74726728,74747918,21191,1,Gm28230-201,7925,Gm28230-201;Hoxd3-203;Hoxd3-205;Hoxd3-202;Hoxd3-201,Gm28230;Hoxd3;Hoxd3;Hoxd3;Hoxd3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,23,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
19289,cg00323590,-0.000000301,0.000000402,-0.748491801,0.454731064,loss,ns,0.000000623,0.000000683,0.913038149,0.361932008,pos,ns,-0.0000696,0.000199982,-0.347990677,0.728083363,neg,ns,0.137818893,0.00000232,0.00000688,0.336696683,0.736573381,pos,ns,0.988745438,Foxp1,Foxp1_threeUTR,6,98941013,98941062,98941061,98941062,50,-,AAGTTTTCATCGGGGCAGTATTTGCGAGGACGGCCTCGTTGAATATGGCG,3' UTR,6,98925338,99266515,341178,2,Foxp1-206,325453,Foxp1-206;Foxp1-204;Foxp1-220;Foxp1-230;Foxp1-225;Foxp1-201;Foxp1-205;Foxp1-207;Foxp1-208;Foxp1-226;Foxp1-228;Foxp1-221;Foxp1-222;Foxp1-210,Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,9,87,108655,ENSMUSG00000030067,mapped to different genes,6,98940999,98941068,70,*,70,8,0.6,1.281464531,0.114285714,0.000000774,CpGisland,TRUE,U10,Tr-S
8651,cg18626234,0.0000193,0.00000272,7.104687929,8.31E-12,gain,yes,-0.00000422,0.00000462,-0.913017654,0.36194277,neg,ns,0.000959314,0.001354782,0.708095134,0.479418241,pos,ns,0.319285446,0.0000531,0.0000466,1.138730518,0.255694784,pos,ns,0.93513127,Btrc,Btrc_Intron,19,45477687,45477736,45477735,45477736,50,-,AGAGCAAATTAGAACAATCAGTTTACACAGATAGCTCCTGATTGGAGGCG,"Intron (Btrc-204/Btrc, intron 1 of 2)",19,45363734,45507736,144003,1,Btrc-204,113953,Btrc-204;Btrc-201;Btrc-210;Btrc-202;Btrc-203;Btrc-209,Btrc;Btrc;Btrc;Btrc;Btrc;Btrc,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,63,98,12234,ENSMUSG00000025217,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15780,cg08422462,4.31E-08,0.00000432,0.009994951,0.992031745,gain,ns,-0.00000669,0.00000733,-0.912729691,0.362093996,neg,ns,0.000212804,0.002148115,0.09906537,0.921150396,pos,ns,0.035669457,-0.0000637,0.0000739,-0.861750913,0.38949069,neg,ns,0.91539426,Tet3,Tet3_Exon,6,83375815,83375864,83375815,83375816,50,-,CGTTGAAGTACATGCTCCAGGAACAACCAAAGGAGAAGGAGGCACCACAG,"Exon (Tet3-202/Tet3, exon 7 of 11)",6,83362373,83441675,79303,2,Tet3-202,65811,Tet3-202;Tet3-203,Tet3;Tet3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,8,194388,ENSMUSG00000034832,conserved gene and region,6,83375617,83375899,283,*,283,18,0.586572438,0.742132867,0.06360424,1.37E-10,CpGisland,TRUE,U10,Tr-S
5282,cg14505098,-0.0000268,0.00000784,-3.41803609,0.000715026,loss,ns,0.0000122,0.0000133,0.912723606,0.362097192,pos,ns,-0.002160142,0.003902225,-0.553566675,0.580274469,neg,ns,0.236366537,-0.000286684,0.000134197,-2.136286344,0.03343901,neg,ns,0.712344221,Ranbp17,Ranbp17_Intron,11,33300993,33301042,33301041,33301042,50,+,AGCTGCCAACTGCTAATCCAATTTCCCTGATAAATGTGGCAAGAGACACG,"Intron (Ranbp17-202/Ranbp17, intron 19 of 27)",11,33211795,33513746,301952,2,Ranbp17-202,212704,Ranbp17-202;Ranbp17-206;Ranbp17-203;Ranbp17-205,Ranbp17;Ranbp17;Ranbp17;Ranbp17,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,31,66011,ENSMUSG00000040594,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20519,cg13475493,-0.0000504,0.00000753,-6.692412817,1.03E-10,loss,yes,-0.0000117,0.0000128,-0.912670437,0.362125119,neg,ns,-0.006486588,0.003745647,-1.731766863,0.084309866,neg,ns,1.074121601,0.000163933,0.000128812,1.272648854,0.204096339,pos,ns,0.83537959,Hnrnpa1,Hnrnpa1_threeUTR,15,103245781,103245830,103245829,103245830,50,+,AGTAGACACTTGTGGTATGTGGAGTACAGATAAGCCAGGGGCAGGCCACG,3' UTR,15,103240432,103246692,6261,1,Hnrnpa1-203,5349,Hnrnpa1-201;Hnrnpa1-203;Hnrnpa1-202;Hnrnpa1-204;Hnrnpa1-205;Nfe2-201;Nfe2-205;Nfe2-210;Nfe2-208;Nfe2-207;Nfe2-206;Nfe2-202;Nfe2-204;Nfe2-209;Nfe2-203,Hnrnpa1;Hnrnpa1;Hnrnpa1;Hnrnpa1;Hnrnpa1;Nfe2;Nfe2;Nfe2;Nfe2;Nfe2;Nfe2;Nfe2;Nfe2;Nfe2;Nfe2,5349;0;5327;0;5287;9609;5635;5686;5846;5685;7322;8232;5857;6980;12573,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,2,15382,ENSMUSG00000046434,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15893,cg08274301,0.00000663,0.00000383,1.732151009,0.084241356,gain,ns,0.00000593,0.0000065,0.912536103,0.362195683,pos,ns,-0.001221908,0.001905172,-0.641363768,0.521760264,neg,ns,0.282528999,-0.0000318,0.0000655,-0.484700954,0.628230789,neg,ns,0.928154778,Gm50420,Gm50420_Intergenic_upstream,18,83766376,83766425,83766424,83766425,50,+,ACAGATGGTGAACGCTCAGTTTAAAGCAATATGTCCATTAAAATAACCCG,Distal Intergenic,18,83905796,83905942,147,1,Gm50420-201,-139371,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,9,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1570,cg01450059,-0.0000431,0.00000757,-5.689907515,2.94E-08,loss,yes,0.0000117,0.0000129,0.912419749,0.36225681,pos,ns,-0.005332651,0.00376665,-1.415754301,0.157851344,neg,ns,0.801751716,-0.00029598,0.000129535,-2.284946455,0.022991201,neg,ns,0.763270928,Zfp521,Zfp521_Intron,18,13765184,13765233,13765184,13765185,50,+,CGTGGGAATTTAGCTAAAACTGTTAAAACTGACACCATTGGCTTTTGTTA,"Intron (Zfp521-201/Zfp521, intron 5 of 7)",18,13687013,13972787,285775,2,Zfp521-201,207554,Zfp521-201;Zfp521-205;Zfp521-204,Zfp521;Zfp521;Zfp521,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,81,225207,ENSMUSG00000024420,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6520,cg05598763,-0.0000026,0.00000367,-0.709161578,0.478757208,loss,ns,0.00000568,0.00000623,0.912365507,0.362285308,pos,ns,0.003563337,0.001824703,1.952830772,0.051739263,pos,ns,1.286179758,-0.000133496,0.0000628,-2.12737296,0.034178228,neg,ns,0.932160038,Strbp,Strbp_threeUTR,2,37580758,37580807,37580758,37580759,50,-,CGAGAATAAAGTGAGATAAACGTGCTGAAAACTGCTTAAAAGTATTAACC,3' UTR,2,37483228,37647219,163992,2,Strbp-207,66412,Strbp-207;Strbp-201;Strbp-208;Strbp-209;Strbp-202,Strbp;Strbp;Strbp;Strbp;Strbp,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,7,20744,ENSMUSG00000026915,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3506,cg01507502,0.00000285,0.00000744,0.383587201,0.701547364,gain,ns,-0.0000115,0.0000126,-0.912358957,0.36228875,neg,ns,-0.006882029,0.003703971,-1.858013714,0.064114958,neg,ns,1.193040637,0.000246218,0.000127379,1.932955458,0.054152228,pos,ns,0.88216409,Gm11892,Gm11892_Intergenic_upstream,4,24218563,24218612,24218563,24218564,50,+,CGCATCGTGTCAGGTCACAGCTGGATTTAGTCAGCATTAACCTTTGGGGA,Distal Intergenic,4,24238100,24239301,1202,1,Gm11892-201,-19488,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,16,16,664973,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18986,cg14444486,-0.0000611,0.00000887,-6.886073047,3.20E-11,loss,yes,0.0000137,0.0000151,0.912215812,0.362363964,pos,ns,-0.009275208,0.004413981,-2.101324683,0.036419446,neg,ns,1.438666664,0.000323415,0.000151796,2.130581556,0.033910527,pos,ns,0.895572465,Nfia,Nfia_threeUTR,4,98113793,98113842,98113793,98113794,50,+,CGTGCGCAGGAAGGGCTCCTCTTAGAGAAGCAGTCAAACTGTGAAGCACT,3' UTR,4,97777608,98118871,341264,1,Nfia-202,336185,Nfia-202;Nfia-203;Nfia-205;Nfia-201;Nfia-204,Nfia;Nfia;Nfia;Nfia;Nfia,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,8,44,18027,ENSMUSG00000028565,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20466,cg05174781,0.0000629,0.00000666,9.453915803,8.38E-19,gain,yes,-0.0000103,0.0000113,-0.912181697,0.362381891,neg,ns,0.009596618,0.00331403,2.895754824,0.004051284,pos,ns,2.392407276,-0.000143577,0.000113969,-1.2597912,0.20869229,neg,ns,0.040760754,Hoxc4,Hoxc4_Intergenic_downstream,15,103061680,103061729,103061680,103061681,50,-,CGCCTTTGTACGAGTGATTTATGACTTCAGTCTTGGTTCACCAAGAGTTC,Distal Intergenic,15,103034395,103036852,2458,1,Hoxc4-201,27334,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,32,91,15423,ENSMUSG00000075394,mapped to different genes,15,103061537,103061809,273,*,273,19,0.586080586,0.8125,0.06959707,7.69E-12,CpGisland,TRUE,U13,Hc-P
14603,cg25533356,0.0000122,0.0000125,0.982510107,0.326614777,gain,ns,0.0000193,0.0000212,0.911991124,0.362482045,pos,ns,0.000600719,0.006203239,0.096839635,0.922916325,pos,ns,0.034837672,-0.00019802,0.000213329,-0.928237171,0.354006724,neg,ns,0.540306635,Mctp1,Mctp1_Intron,13,76810643,76810692,76810643,76810644,50,+,CGATCAGACACTTTTAGATGGTCCGGCCCATGACTTTGACCTTCTGCGCA,"Intron (Mctp1-204/Mctp1, intron 10 of 20)",13,76384535,77031810,647276,1,Mctp1-204,426108,Mctp1-204;Mctp1-201;Mctp1-206,Mctp1;Mctp1;Mctp1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,20,78771,ENSMUSG00000021596,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17415,cg17962462,0.00000352,0.00000324,1.086789826,0.277974009,gain,ns,0.00000502,0.00000551,0.9118464,0.362558115,pos,ns,0.004523592,0.001613305,2.803928029,0.00536684,pos,ns,2.270281347,-0.000172904,0.0000555,-3.116423411,0.002002011,neg,ns,0.93062002,Nrxn1,Nrxn1_Exon,17,90163808,90163857,90163856,90163857,50,-,TTCATCAACTACTCGACCAAGTCGATATGGAATTCGCTGTCTAGCAATCG,"Exon (Nrxn1-202/Nrxn1, exon 18 of 21)",17,90033631,91088907,1055277,2,Nrxn1-202,925050,Nrxn1-202;Nrxn1-207;Nrxn1-216;Nrxn1-204;Nrxn1-217;Nrxn1-209;Nrxn1-201;Nrxn1-213;Nrxn1-206;Nrxn1-223;Nrxn1-219,Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,22,27,18189,ENSMUSG00000024109,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18960,cg17939749,0.0000564,0.0000119,4.754502721,0.00000305,gain,ns,-0.0000184,0.0000202,-0.911723737,0.362622596,neg,ns,0.013811692,0.00590652,2.338380642,0.020002957,pos,ns,1.698905797,-0.000436461,0.000203125,-2.148733091,0.03242978,neg,ns,0.378444153,Dach1,Dach1_Intron,14,98072837,98072886,98072885,98072886,50,-,TGACTGCATTTCTTGTTTCAGCCAGTTTCCTTGTCCTCTTGCAATTAACG,"Intron (Dach1-201/Dach1, intron 1 of 10)",14,97786853,98169543,382691,2,Dach1-201,96657,Dach1-201;Dach1-202;Dach1-203,Dach1;Dach1;Dach1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,76,13134,ENSMUSG00000055639,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14171,cg05496616,0.000241727,0.0000133,18.11220696,1.61E-50,gain,yes,-0.0000207,0.0000227,-0.911574075,0.362701281,neg,ns,-0.013290957,0.00664247,-2.000905846,0.046274131,neg,ns,1.334661728,-0.0000838,0.000228434,-0.366987916,0.713878414,neg,ns,0.291377667,Gm28230,Gm28230_threeUTR,2,74728441,74728490,74728441,74728442,50,+,CGGAGGATGAAGTGGAAAAAAGATCATAAGCTGCCCAACACTAAAGGCAG,3' UTR,2,74726728,74747918,21191,1,Gm28230-201,1713,Gm28230-201;Hoxd3-203;Hoxd3-205;Hoxd4-203;Hoxd4-201;Hoxd4-202,Gm28230;Hoxd3;Hoxd3;Hoxd4;Hoxd4;Hoxd4,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,23,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
24469,cg15627386,-0.00000211,0.00000195,-1.082764452,0.279754465,loss,ns,-0.00000302,0.00000332,-0.911380474,0.362803082,neg,ns,-0.001567547,0.000971929,-1.61282029,0.107801061,neg,ns,0.967376964,0.0000426,0.0000334,1.274272068,0.203521425,pos,ns,0.939476429,Ago1,Ago1_threeUTR,4,126460435,126460484,126460435,126460436,50,+,CGCCCACCCCCCAGCGGGTGGTAGTAGCCCTCAGGCGGTGAGAAGAAGGA,3' UTR,4,126435012,126468421,33410,2,Ago1-207,7937,Ago1-207;Ago1-201;Ago1-206;Ago1-202;Ago1-205;Ago1-203,Ago1;Ago1;Ago1;Ago1;Ago1;Ago1,0;0;0;0;0;-310,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,11,13,236511,ENSMUSG00000041530,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6945,cg17494610,-0.00000151,0.00000366,-0.413434674,0.679574024,loss,ns,0.00000566,0.00000621,0.911293509,0.362848817,pos,ns,0.00137188,0.001819175,0.754121893,0.451348468,pos,ns,0.345488027,-0.000182291,0.0000626,-2.913798773,0.003830283,neg,ns,0.944498666,Lsamp,Lsamp_Intron,16,39994132,39994181,39994132,39994133,50,-,CGATGTAGACCATCTGTTTAGTTCTGTTCTTGTATAATATATGGTGAGAA,"Intron (Lsamp-207/Lsamp, intron 1 of 2)",16,39984361,40979709,995349,1,Lsamp-207,9771,Lsamp-207;Lsamp-206;Lsamp-208;Lsamp-210;Lsamp-209,Lsamp;Lsamp;Lsamp;Lsamp;Lsamp,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,23,268890,ENSMUSG00000061080,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7482,cg01273518,-0.00000595,0.00000701,-0.848814845,0.396639298,loss,ns,0.0000109,0.0000119,0.911131506,0.362934024,pos,ns,0.005511831,0.003490975,1.578880214,0.115383349,pos,ns,0.937856862,-0.000111893,0.000120054,-0.932023442,0.352049706,neg,ns,0.600650298,Mrps9,Mrps9_Intergenic_upstream,1,42780760,42780809,42780760,42780761,50,+,CGGATGGGAGCACTCGACAGAAAAATCAAACTTCTGGTCATGGCTCATTA,Distal Intergenic,1,42851233,42905682,54450,1,Mrps9-201,-70424,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,12,69527,ENSMUSG00000060679,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25895,cg22342081,0.000071,0.0000146,4.84916821,0.00000197,gain,ns,-0.0000227,0.0000249,-0.911130728,0.362934433,neg,ns,0.027112032,0.007289479,3.719337529,0.000237046,pos,ns,3.625166922,-0.000655155,0.000250685,-2.61346493,0.009400164,neg,ns,0.42720591,Gm50453,Gm50453_Promoter,4,140452641,140452690,140452689,140452690,50,-,TAAACCATTCAAACATGCAATAAACCAAGCCATTAAAAATTAATCGCTCG,Promoter (6-7kb),4,140445846,140446164,319,2,Gm50453-201,-6526,NA,NA,NA,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,2,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19094,cg17266697,-0.00000315,0.00000117,-2.697399295,0.00737075,loss,ns,0.00000181,0.00000198,0.91110952,0.362945588,pos,ns,0.001122394,0.0005815,1.93016897,0.054497948,pos,ns,1.263619848,-0.0000461,0.00002,-2.307507924,0.021684976,neg,ns,0.028241967,Ppp1r1b,Ppp1r1b_Promoter,11,98342456,98342505,98342456,98342457,50,+,CGGAAAAATTGGTTTATAAATTAACAGCTGTTTTAACTTTAGGGCCTCTT,Promoter (5-6kb),11,98348404,98357796,9393,1,Ppp1r1b-201,-5899,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,16,16,19049,ENSMUSG00000061718,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
1396,cg16267227,0.0000209,0.00000878,2.380992208,0.017869782,gain,ns,-0.0000136,0.0000149,-0.911055676,0.362973911,neg,ns,0.002088102,0.004370003,0.477826277,0.633110607,pos,ns,0.19852041,-0.000205113,0.000150284,-1.364834522,0.173294844,neg,ns,0.687644296,Rpl36-ps3,Rpl36-ps3_Intergenic_upstream,12,12676793,12676842,12676841,12676842,50,-,GGGGGAGAGTTCTCCATGCAGAATTTCCCTGCTTAATCCGCTCTTGTGCG,Distal Intergenic,12,12912022,12912336,315,1,Rpl36-ps3-201,-235229,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,19,20,100043215,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10610,cg23712970,0.00000154,0.00000334,0.461605974,0.644687652,gain,ns,0.00000517,0.00000567,0.911000826,0.363002765,pos,ns,0.002386571,0.001661418,1.436466375,0.151878079,pos,ns,0.818504906,-0.0000575,0.0000571,-1.006999096,0.314720566,neg,ns,0.077792866,Acin1,Acin1_fiveUTR,14,54653638,54653687,54653638,54653639,50,+,CGATCAGCCGGAGACATGCAGGGGAGCCATCTTGCCACTTACCCAGCAGC,Promoter (<=1kb),14,54642161,54653667,11507,2,Acin1-216,0,Acin1-208;Acin1-216;Acin1-202;Acin1-201;Acin1-219;Acin1-218;Acin1-221;Acin1-224;Acin1-203;Acin1-225;Acin1-204;Acin1-226;Acin1-213;Acin1-214;Acin1-209;Acin1-220,Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,7,22,56215,ENSMUSG00000022185,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20510,cg20166043,-0.00000646,0.00000531,-1.214760337,0.225381972,loss,ns,-0.00000822,0.00000903,-0.910818386,0.363098747,neg,ns,-0.0000255,0.002644903,-0.009651387,0.992305635,neg,ns,0.003354542,-0.000197295,0.000091,-2.169076468,0.030836701,neg,ns,0.895258931,Mycbp2,Mycbp2_threeUTR,14,103177291,103177340,103177291,103177292,50,+,CGTCCAAATCCCTGACTCCTTGGCTAGCATTAAAGATATTCTGAGCAACA,3' UTR,14,103113411,103346418,233008,2,Mycbp2-202,169078,Mycbp2-202;Mycbp2-201;Mycbp2-209;Mycbp2-204,Mycbp2;Mycbp2;Mycbp2;Mycbp2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,6,105689,ENSMUSG00000033004,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14511,cg11275491,-0.0000023,0.00000158,-1.457085708,0.146104898,loss,ns,-0.00000244,0.00000268,-0.910724492,0.363148152,neg,ns,0.000221287,0.000784125,0.282208429,0.777972011,pos,ns,0.109036027,-0.0000137,0.000027,-0.509405534,0.610830416,neg,ns,0.965946386,Ptprd,Ptprd_threeUTR,4,76100433,76100482,76100433,76100434,50,+,CGGAGGCAACATACCATCTTCATTGGTTCGAATCAACACGGACAAGCTCT,3' UTR,4,75941238,76449980,508743,2,Ptprd-206,349498,Ptprd-206;Ptprd-204;Ptprd-213;Ptprd-220;Ptprd-203;Ptprd-217;Ptprd-218;Ptprd-219;Ptprd-201;Ptprd-214;Ptprd-212,Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,8,32,19266,ENSMUSG00000028399,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13586,cg26245011,-0.00000232,0.00000117,-1.988273057,0.047660661,loss,ns,0.00000181,0.00000198,0.910452364,0.363291361,pos,ns,-0.000445079,0.000581084,-0.765945739,0.444291395,neg,ns,0.352332098,0.0000103,0.00002,0.514554118,0.60723128,pos,ns,0.0350416,Rmnd5a,Rmnd5a_Exon,6,71440060,71440109,71440060,71440061,50,+,CGCTCGCACAGCTGCCCGTAGCCTGAGAACTTGTGCAGCACCTTCTCCAG,Promoter (<=1kb),6,71388634,71440637,52004,2,Rmnd5a-201,528,Rmnd5a-201,Rmnd5a,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,68477,ENSMUSG00000002222,mapped to different genes,6,71439742,71440876,1135,*,1135,152,0.718061674,1.03975314,0.133920705,1.17E-136,CpGisland,TRUE,U1,Pr-A
15604,cg24093622,-0.0000228,0.0000209,-1.091496104,0.275902234,loss,ns,0.0000324,0.0000356,0.910439534,0.363298114,pos,ns,0.005409031,0.010418862,0.519157565,0.604021303,pos,ns,0.218947744,0.000197202,0.000358304,0.550375782,0.582458015,pos,ns,0.61575194,Sh3gl3,Sh3gl3_threeUTR,7,82270761,82270810,82270809,82270810,50,-,AATGTTTTTAAGCATACAGAGCTAAGCTAGGAATGCTGAACACTGTGTCG,3' UTR,7,82173840,82307087,133248,1,Sh3gl3-206,96921,Sh3gl3-206;Sh3gl3-208;Sh3gl3-201;Sh3gl3-207;Sh3gl3-202;Sh3gl3-203;Sh3gl3-209;Sh3gl3-204,Sh3gl3;Sh3gl3;Sh3gl3;Sh3gl3;Sh3gl3;Sh3gl3;Sh3gl3;Sh3gl3,0;0;0;95919;0;0;0;-76,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,1,20408,ENSMUSG00000030638,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12552,cg26163340,0.0000553,0.0000205,2.7015708,0.007281059,gain,ns,0.0000316,0.0000347,0.91030791,0.363367395,pos,ns,0.024409769,0.01017895,2.3980635,0.017073034,pos,ns,1.767689294,-0.000686944,0.000350053,-1.962399939,0.050610149,neg,ns,0.33564264,Klhl5,Klhl5_fiveUTR,5,65131364,65131413,65131364,65131365,50,+,CGTTGCCTAGACGATCACTTGGTTTCTCTGAGGATGTCTGGTTCTCGTAA,Promoter (<=1kb),5,65131403,65134532,3130,1,Klhl5-206,0,Klhl5-204;Klhl5-201;Klhl5-205;Klhl5-207;Klhl5-206;Klhl5-203,Klhl5;Klhl5;Klhl5;Klhl5;Klhl5;Klhl5,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,4,71778,ENSMUSG00000054920,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19372,cg07442873,0.0000141,0.00000244,5.787696319,1.75E-08,gain,yes,0.00000377,0.00000415,0.910125588,0.363463376,pos,ns,0.001943765,0.001214962,1.599856153,0.11064911,pos,ns,0.956052077,0.00000152,0.0000418,0.036337047,0.971036997,pos,ns,0.949577562,Foxp1,Foxp1_Intron,6,99137239,99137288,99137239,99137240,50,+,CGACAACAGCTTGCAGAAACTTTTAATTTTAATTCCTGCAGGCTGTGCTG,"Intron (Foxp1-206/Foxp1, intron 3 of 17)",6,98925338,99266515,341178,2,Foxp1-206,129227,Foxp1-206;Foxp1-204;Foxp1-220;Foxp1-201;Foxp1-205;Foxp1-207;Foxp1-208;Foxp1-226;Foxp1-228;Foxp1-221;Foxp1-222;Foxp1-223,Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,87,108655,ENSMUSG00000030067,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8959,cg10893847,0.000000236,0.000000352,0.670470511,0.503057075,gain,ns,0.000000544,0.000000598,0.910066906,0.363494272,pos,ns,-0.000252435,0.000175255,-1.44038657,0.150767235,neg,ns,0.821693031,0.00000653,0.00000603,1.083630912,0.279370566,pos,ns,0.991962054,Kcnc1,Kcnc1_Exon,7,46435189,46435238,46435189,46435190,50,-,CGCGCTGGCGAACGAAGACTGCCCCCACATAGACCAGGCCCTCACTCCCG,"Exon (Kcnc1-203/Kcnc1, exon 3 of 4)",7,46397648,46438704,41057,1,Kcnc1-203,37541,Kcnc1-201;Kcnc1-203,Kcnc1;Kcnc1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,14,16502,ENSMUSG00000058975,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12539,cg06562912,-0.00000968,0.00000617,-1.570734827,0.117264339,loss,ns,-0.00000953,0.0000105,-0.910041003,0.36350791,neg,ns,0.009307085,0.003068441,3.033164317,0.002624602,pos,ns,2.580936615,-0.00046349,0.000105523,-4.392292154,0.0000154,neg,ns,0.879239173,Arhgap44,Arhgap44_Exon,11,65041442,65041491,65041442,65041443,50,-,CGTTTGAAAGTAGTTTGCATAGTCAATTTCTTTGGCCACAAAACTGTACA,"Exon (Arhgap44-201/Arhgap44, exon 8 of 21)",11,65002039,65162961,160923,2,Arhgap44-201,121470,Arhgap44-201;Arhgap44-203;Arhgap44-204;Gm12294-201,Arhgap44;Arhgap44;Arhgap44;Gm12294,0;0;0;-3901,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,216831,ENSMUSG00000033389,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4849,cg24026327,0.00000391,0.00000418,0.93623761,0.349879631,gain,ns,0.00000646,0.0000071,0.91002977,0.363513824,pos,ns,0.002809194,0.002079989,1.350580846,0.177814809,pos,ns,0.750032073,-0.0000135,0.0000715,-0.189384708,0.849915245,neg,ns,0.049499292,Gm48862,Gm48862_Intergenic_downstream,10,30980374,30980423,30980422,30980423,50,-,TATCAGTGGTTCCCAAGGCTGTCTAGCCTGGGAAAAGCTGCATGGACACG,Distal Intergenic,10,30880517,30880850,334,1,Gm48862-201,99906,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17277,cg16486681,-0.0000172,0.0000117,-1.47595475,0.140971041,loss,ns,0.000018,0.0000198,0.909987942,0.363535848,pos,ns,0.010816219,0.00580474,1.863342477,0.063359549,pos,ns,1.198187925,-0.000140015,0.000199625,-0.701392563,0.483584251,neg,ns,0.162401153,Zbtb7b,Zbtb7b_Intron,3,89390174,89390223,89390174,89390175,50,-,CGTCAAGTTTACTCACGAGTTTACTCAGCACAAGGAGGGGGAAGAGGCCA,"Intron (Zbtb7b-202/Zbtb7b, intron 1 of 2)",3,89377644,89392069,14426,2,Zbtb7b-202,1846,Zbtb7b-203;Zbtb7b-204;Zbtb7b-202;Zbtb7b-201;Zbtb7b-206;Zbtb7b-208;Zbtb7b-209;Zbtb7b-205;Zbtb7b-207,Zbtb7b;Zbtb7b;Zbtb7b;Zbtb7b;Zbtb7b;Zbtb7b;Zbtb7b;Zbtb7b;Zbtb7b,0;0;0;0;0;0;0;0;4553,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,12,22724,ENSMUSG00000028042,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
26256,cg05395648,0.0000199,0.00000423,4.700525204,0.00000391,gain,ns,-0.00000653,0.00000718,-0.909985009,0.363537393,neg,ns,0.002478749,0.002103383,1.178457844,0.239517909,pos,ns,0.620662009,-0.000181524,0.0000723,-2.509490633,0.012600161,neg,ns,0.036920959,Ccn1,Ccn1_Promoter,3,145650058,145650107,145650058,145650059,50,+,CGTTCCAGAATTCTCAAACATCTCAGGAATGCTGGTTGGCGCGGGCTGCT,Promoter (<=1kb),3,145646976,145649981,3006,2,Ccn1-201,-77,Ccn1-201,Ccn1,-77,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,3,16007,ENSMUSG00000028195,conserved gene and region,3,145649756,145650130,375,*,375,41,0.666666667,0.994759317,0.109333333,3.75E-33,CpGisland,TRUE,NA,NRS
27597,cg27596519,-0.00011979,0.0000107,-11.17186825,1.41E-24,loss,yes,-0.0000166,0.0000182,-0.909713086,0.36368059,neg,ns,-0.012657759,0.005336703,-2.371831026,0.018310703,neg,ns,1.737294975,-0.000318233,0.000183529,-1.733968701,0.083917796,neg,ns,0.697160115,Usp21,Usp21_Exon,1,171283632,171283681,171283680,171283681,50,+,TCCCACCTTGGGGATGGGCAGGGACAGGTCACAAAAAACCTCGAAGGTCG,"Exon (Usp21-201/Usp21, exon 8 of 13)",1,171281945,171287991,6047,2,Usp21-201,4310,Ppox-207;Ppox-201;Ppox-206;Ppox-208;Ppox-202;Ppox-204;Ppox-205;Ppox-203;Ufc1-201;Ufc1-203;Usp21-201;Usp21-202;Usp21-208;Usp21-210;Usp21-203;Usp21-207;Usp21-205;Usp21-204;Usp21-209;Usp21-206;Usp21-211;Usp21-212,Ppox;Ppox;Ppox;Ppox;Ppox;Ppox;Ppox;Ppox;Ufc1;Ufc1;Usp21;Usp21;Usp21;Usp21;Usp21;Usp21;Usp21;Usp21;Usp21;Usp21;Usp21;Usp21,-2446;-2446;-2446;-2872;-3805;-3110;-2446;-2513;11343;6759;0;0;-726;0;0;-465;0;0;0;0;0;3125,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,30941,ENSMUSG00000053483,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26162,cg14172412,-0.00000187,0.00000506,-0.369989537,0.711642928,loss,ns,-0.00000782,0.00000859,-0.909699899,0.363687535,neg,ns,0.000298916,0.002518022,0.11871056,0.905581556,pos,ns,0.043072431,-0.0000978,0.0000866,-1.129424389,0.259592032,neg,ns,0.460643129,Lmo4,Lmo4_fiveUTR,3,144202776,144202825,144202776,144202777,50,-,CGTATTTTAAGCAGCACCTTTCACATGCCATTGTGGTGACCGCCATCTCC,5' UTR,3,144188530,144205220,16691,2,Lmo4-201,2395,Lmo4-203;Lmo4-201;Lmo4-202;Lmo4-207;Lmo4-208;Lmo4-205;Lmo4-204,Lmo4;Lmo4;Lmo4;Lmo4;Lmo4;Lmo4;Lmo4,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,54,16911,ENSMUSG00000028266,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
15058,cg10040343,0.0000296,0.00000558,5.308309312,0.000000211,gain,yes,0.00000862,0.00000947,0.909695342,0.363689936,pos,ns,0.008401123,0.002775741,3.026623825,0.002680365,pos,ns,2.571806085,-0.00024384,0.0000955,-2.554434429,0.011113847,neg,ns,0.568062865,Elfn2,Elfn2_Intron,15,78685908,78685957,78685956,78685957,50,-,GCACTCAGTAAATGTCTGTTGAATTGAATTGCGCTCAGGGCGGCCAGTCG,"Intron (Elfn2-202/Elfn2, intron 1 of 1)",15,78667331,78718113,50783,2,Elfn2-202,32156,Elfn2-202;Elfn2-201;Elfn2-203,Elfn2;Elfn2;Elfn2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,4,207393,ENSMUSG00000043460,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3253,cg12237348,-0.000008,0.00000456,-1.757340775,0.079846814,loss,ns,0.00000704,0.00000774,0.909566626,0.363757732,pos,ns,0.000763575,0.002267116,0.336804443,0.73649222,pos,ns,0.132831837,-0.000110653,0.000078,-1.419244004,0.156832592,neg,ns,0.910001066,Kcnma1,Kcnma1_threeUTR,14,23363885,23363934,23363933,23363934,50,+,CCTGCAGCGAAGTATCATCAATATTATTCTGATTGGCTGACAGGATAACG,3' UTR,14,23289431,23803304,513874,2,Kcnma1-207,439370,Kcnma1-207;Kcnma1-210;Kcnma1-205;Kcnma1-201;Kcnma1-208;Kcnma1-209;Kcnma1-212;Kcnma1-204;Kcnma1-202;Kcnma1-211;Kcnma1-229;Kcnma1-234;Kcnma1-223;Kcnma1-214;Kcnma1-216;Kcnma1-219;Kcnma1-220;Kcnma1-224;Kcnma1-233;Kcnma1-236;Kcnma1-237;Kcnma1-213;Kcnma1-228;Kcnma1-203;Kcnma1-206;Kcnma1-221;Kcnma1-225;Kcnma1-226;Kcnma1-230;Kcnma1-235,Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,13,41,16531,ENSMUSG00000063142,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21393,cg21473170,0.00000497,0.00000202,2.45491728,0.014640828,gain,ns,-0.00000313,0.00000344,-0.909543947,0.363769679,neg,ns,0.000501279,0.001007426,0.497583828,0.619130162,pos,ns,0.208218038,-0.0000226,0.0000346,-0.652286019,0.51470004,neg,ns,0.952636187,Helz,Helz_Exon,11,107604285,107604334,107604285,107604286,50,-,CGCCAAACCATAGTTTTCGACTTTGGATTGGAACCAGTACTCATGCAAAG,"Exon (Helz-202/Helz, exon 12 of 30)",11,107547956,107672287,124332,1,Helz-202,56329,Helz-202;Helz-201;Helz-203,Helz;Helz;Helz,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,8,78455,ENSMUSG00000020721,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8682,cg13984808,0.0000105,0.00000398,2.644206512,0.008605008,gain,ns,0.00000614,0.00000675,0.909471675,0.36380775,pos,ns,0.003780224,0.001978432,1.910717308,0.056963204,pos,ns,1.244405594,-0.0000725,0.000068,-1.065443139,0.287504565,neg,ns,0.085427732,Poll,Poll_Intergenic_downstream,19,45541587,45541636,45541587,45541588,50,-,CGCCCGAGCAGCCCCATTACGCTGTAATAACAGAAGATGGATGGCCTGGA,Distal Intergenic,19,45552275,45560531,8257,2,Poll-201,18944,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,16,56626,ENSMUSG00000025218,mapped to different genes,19,45541549,45541978,430,*,430,53,0.730232558,0.933098592,0.123255814,8.53E-46,CpGisland,TRUE,NA,NRS
12051,cg04465073,-0.0000172,0.000003,-5.734328962,2.32E-08,loss,yes,-0.00000463,0.0000051,-0.909438182,0.363825394,neg,ns,-0.002181561,0.001492967,-1.461224821,0.1449666,neg,ns,0.838732046,-0.0000207,0.0000513,-0.40255937,0.687549854,neg,ns,0.945066373,Efna5,Efna5_Exon,17,62607343,62607392,62607391,62607392,50,-,TATAATGTCAAAAGCATCGCCAGGAGGAACAGTAGGATTGCCAAAAGGCG,"Exon (Efna5-201/Efna5, exon 5 of 5)",17,62604184,62881317,277134,2,Efna5-201,273925,Efna5-201;Efna5-202,Efna5;Efna5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,21,13640,ENSMUSG00000048915,conserved gene and region,17,62607324,62607456,133,*,133,11,0.578947368,1.015972222,0.082706767,8.11E-08,CpGisland,TRUE,U15,NS
18953,cg09424904,-0.000057,0.0000175,-3.255126898,0.001258757,loss,ns,-0.000027,0.0000297,-0.909392182,0.363849628,neg,ns,0.004349492,0.008710309,0.499349952,0.617887067,pos,ns,0.209090895,-0.000914492,0.000299547,-3.052919332,0.00246258,neg,ns,0.68408811,Dach1,Dach1_Intron,14,98019168,98019217,98019216,98019217,50,+,CTCATTGAAGATCAGCCACTCCTGATGCATAATTCATAGCCTGCACCTCG,"Intron (Dach1-201/Dach1, intron 1 of 10)",14,97786853,98169543,382691,2,Dach1-201,150326,Dach1-201;Dach1-202;Dach1-203,Dach1;Dach1;Dach1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,76,13134,ENSMUSG00000055639,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3092,cg20726505,0.0000564,0.00000635,8.877507396,5.61E-17,gain,yes,-0.00000982,0.0000108,-0.909381827,0.363855083,neg,ns,0.006994055,0.003162895,2.21128266,0.027745709,pos,ns,1.556804168,-0.00014709,0.000108772,-1.352277877,0.177272086,neg,ns,0.084731889,Lhfpl3,Lhfpl3_Exon,5,22746219,22746268,22746219,22746220,50,-,CGCGATGCTCCCGGCTCAGGAGGCTGCCAAGCTGTACCACACCAACTATG,Promoter (<=1kb),5,22746059,23275597,529539,1,Lhfpl3-202,160,Lhfpl3-202,Lhfpl3,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,11,269629,ENSMUSG00000106379,conserved gene but different region,5,22745857,22746231,375,*,375,33,0.712,0.747192368,0.088,1.73E-23,CpGisland,TRUE,U3,Pr-B
7434,cg00207962,0.0000327,0.0000032,10.21169103,2.71E-21,gain,yes,-0.00000495,0.00000544,-0.909366421,0.3638632,neg,ns,0.001877982,0.001594301,1.177934642,0.239726132,pos,ns,0.620284621,0.0000738,0.0000548,1.346400464,0.179157027,pos,ns,0.066541246,Ostm1,Ostm1_Intron,10,42632567,42632616,42632567,42632568,50,+,CGAATCGGTTCTTACAGGCACAGAATGGGCAATCCCTTGATCCCCGTCAA,"Intron (Ostm1-202/Ostm1, intron 2 of 5)",10,42583835,42698323,114489,1,Ostm1-202,48732,Ostm1-202;Ostm1-203,Ostm1;Ostm1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,21,22,14628,ENSMUSG00000038280,conserved gene and region,10,42632523,42632647,125,*,125,9,0.528,1.057330827,0.072,0.00000584,CpGisland,TRUE,U3,Pr-B
13031,cg18611544,-0.0000613,0.00000953,-6.427158255,4.90E-10,loss,yes,0.0000147,0.0000162,0.909350514,0.36387158,pos,ns,-0.011343935,0.004744571,-2.390929554,0.017402098,neg,ns,1.759398401,0.000160814,0.000163165,0.985587053,0.3251044,pos,ns,0.751401834,Epb41l3,Epb41l3_Exon,17,69266377,69266426,69266377,69266378,50,+,CGGCCTCCTTGAGCGCCTCCCTAGACAATGACCCGAGTGACAGTTCAGAG,"Exon (Epb41l3-205/Epb41l3, exon 8 of 17)",17,69127000,69289989,162990,1,Epb41l3-220,139377,Epb41l3-220;Epb41l3-214;Epb41l3-211;Epb41l3-202;Epb41l3-201;Epb41l3-215;Epb41l3-219;Epb41l3-216;Epb41l3-217;Epb41l3-218;Epb41l3-205;Epb41l3-207;Epb41l3-208;Epb41l3-210;Epb41l3-206,Epb41l3;Epb41l3;Epb41l3;Epb41l3;Epb41l3;Epb41l3;Epb41l3;Epb41l3;Epb41l3;Epb41l3;Epb41l3;Epb41l3;Epb41l3;Epb41l3;Epb41l3,0;0;0;0;0;0;0;0;0;0;0;0;0;4114;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,2,13823,ENSMUSG00000024044,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13483,cg10104432,-0.0000154,0.00000412,-3.741732817,0.000217719,loss,ns,0.00000636,0.000007,0.90919196,0.36395512,pos,ns,-0.001693517,0.002049897,-0.826147586,0.409355746,neg,ns,0.38789911,-0.0000134,0.0000705,-0.190765178,0.848834442,neg,ns,0.926355348,Vwc2l,Vwc2l_Exon,1,70750954,70751003,70751002,70751003,50,+,GTGTCGCTGTGAGCCCAGCAATGAAGTTCACTGTGTTGTAGCAGACTGCG,"Exon (Vwc2l-201/Vwc2l, exon 3 of 4)",1,70725715,70885397,159683,1,Vwc2l-201,25239,Vwc2l-201;Vwc2l-203;Vwc2l-204,Vwc2l;Vwc2l;Vwc2l,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,6,320460,ENSMUSG00000045648,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19973,cg08376608,-0.00000208,0.00000258,-0.804213942,0.421889713,loss,ns,-0.00000399,0.00000439,-0.909190213,0.363956041,neg,ns,-0.002622314,0.001284741,-2.041123578,0.042085152,neg,ns,1.375871102,0.0000346,0.0000442,0.783287202,0.434056476,pos,ns,0.915677463,Wdfy3,Wdfy3_Exon,5,101845022,101845071,101845070,101845071,50,-,ACAAATATGAAGCCGTCTTTCTCATCTAGACTGAGCTGGTCGGACCAGCG,"Exon (Gm20548-204/Gm20548-204, exon 3 of 4)",5,101832956,102069921,236966,2,Wdfy3-201,224850,Wdfy3-201;Wdfy3-204;Wdfy3-205;Wdfy3-207,Wdfy3;Wdfy3;Wdfy3;Wdfy3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,72145,ENSMUSG00000043940,conserved gene and region,5,101845062,101845169,108,*,108,10,0.731481482,0.711462451,0.092592593,0.000000133,CpGisland,TRUE,U10,Tr-S
19900,cg22479660,8.05E-08,0.00000381,0.021117926,0.983165171,gain,ns,-0.00000589,0.00000648,-0.909157303,0.363973382,neg,ns,-0.003497079,0.001897372,-1.843117274,0.066266416,neg,ns,1.178706515,0.000172193,0.0000653,2.638956929,0.008736362,pos,ns,0.884061839,Nkx6-1,Nkx6-1_Intergenic_downstream,5,101603391,101603440,101603391,101603392,50,+,CGGCTAATGCATTTTCCAATGTGTGAGGCAGATTATTAATGCGCTCCAGT,Distal Intergenic,5,101658139,101664996,6858,2,Nkx6-1-201,61556,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,10,18096,ENSMUSG00000035187,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11928,cg24319615,0.0000259,0.0000074,3.492312108,0.000548465,gain,ns,-0.0000114,0.0000126,-0.909138509,0.363983286,neg,ns,-0.000755266,0.003685041,-0.204954466,0.837742207,neg,ns,0.076889603,0.000142971,0.000126728,1.12817029,0.260120371,pos,ns,0.695037084,Gm13626,Gm13626_Intergenic_downstream,2,61686103,61686152,61686103,61686104,50,+,CGATCCGGAGAGCTGAAAATGTAAACACAAGCTGGTATTATGGTGTGACT,Distal Intergenic,2,61706893,61707591,699,2,Gm13626-201,21439,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,8,,NA,mapped to different genes,2,61686048,61686109,62,*,62,9,0.629032258,1.468421053,0.14516129,1.18E-08,CpGisland,TRUE,U15,NS
4767,cg07679745,0.00000307,0.00000437,0.702208255,0.483076201,gain,ns,-0.00000674,0.00000742,-0.909054373,0.364027623,neg,ns,-0.006897743,0.002173393,-3.173721268,0.001656027,neg,ns,2.780932684,0.000131888,0.0000747,1.764553824,0.078623508,pos,ns,0.06735036,Mecom,Mecom_fiveUTR,3,30509723,30509772,30509723,30509724,50,+,CGCACATGCGCGCTAGACGCCCCTCCAACATCTCAGCGCCGCCAAAAAAA,Promoter (<=1kb),3,29951299,30509733,558435,2,Mecom-212,0,Mecom-212;Mecom-213;Mecom-207;Mecom-208;Mecom-211;Mecom-209,Mecom;Mecom;Mecom;Mecom;Mecom;Mecom,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,13,80,14013,ENSMUSG00000027684,conserved gene and region,3,30509690,30509782,93,*,93,8,0.537634409,1.24,0.086021505,0.00000681,CpGisland,TRUE,U3,Pr-B
9239,cg14411125,0.0000613,0.0000083,7.388556604,1.39E-12,gain,yes,-0.0000128,0.0000141,-0.909053196,0.364028243,neg,ns,0.00255973,0.004129887,0.619806285,0.535840629,pos,ns,0.27096436,0.000132248,0.000142026,0.931151088,0.352499991,pos,ns,0.742579,Cadm1,Cadm1_Exon,9,47829386,47829435,47829386,47829387,50,+,CGACGACAGAACCAGCAGTTCACGGTTGGTATCACATTACTGTTTATCTA,"Exon (Cadm1-204/Cadm1, exon 8 of 10)",9,47530173,47853385,323213,1,Cadm1-204,299213,Cadm1-204;Cadm1-209;Cadm1-206;Cadm1-202;Cadm1-203;Cadm1-211;Cadm1-201,Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,13,77,54725,ENSMUSG00000032076,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2744,cg14891195,0.000088,0.00000949,9.277021278,3.09E-18,gain,yes,-0.0000147,0.0000161,-0.909052883,0.364028408,neg,ns,0.01424141,0.004722694,3.015526978,0.002777469,pos,ns,2.556350702,-0.000431759,0.000162413,-2.658399417,0.008258713,neg,ns,0.113138343,Klhl14,Klhl14_fiveUTR,18,21654696,21654745,21654744,21654745,50,+,CTTGGGCCTGGGGCTCAGTGAGTCGTAACGAGAGTAATAGGAAATCCACG,Promoter (<=1kb),18,21550379,21654718,104340,2,Klhl14-202,0,Klhl14-201;Klhl14-202,Klhl14;Klhl14,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,38,225266,ENSMUSG00000042514,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
26516,cg02897291,-0.0000161,0.00000977,-1.651440892,0.099661161,loss,ns,-0.0000151,0.0000166,-0.909042539,0.364033859,neg,ns,-0.005364171,0.00486339,-1.102969521,0.2708959,neg,ns,0.567197568,0.000210134,0.000167252,1.256392076,0.209919803,pos,ns,0.839568568,Casz1,Casz1_Intron,4,148860798,148860847,148860798,148860799,50,-,CGAGTTACCAAGGAACACAAAATTTTAATTAGTGTATTTTAATCATTCAG,"Intron (Casz1-201/Casz1, intron 2 of 15)",4,148804429,148945129,140701,1,Casz1-201,56369,Casz1-201;Casz1-202,Casz1;Casz1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,94,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
4570,cg17909166,-0.00000352,0.00000285,-1.236016272,0.217388253,loss,ns,0.0000044,0.00000484,0.908989716,0.364061698,pos,ns,0.001908446,0.001418772,1.345139714,0.179563306,pos,ns,0.745782408,-0.000131548,0.0000488,-2.696128325,0.007398275,neg,ns,0.944650293,Gm37557,Gm37557_Intron,3,29826063,29826112,29826111,29826112,50,-,TCTGGAACCACTCAAGCATATAATGAATGGAGTACCACTGATTGGAAACG,"Intron (Gm33206-201/Gm33206-201, intron 3 of 3)",3,29771284,29771422,139,1,Gm37557-201,54828,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23785,cg14649295,-0.00000742,0.00000455,-1.632340809,0.103623029,loss,ns,-0.00000702,0.00000772,-0.90886353,0.364128204,neg,ns,0.010323406,0.002262489,4.562853457,0.00000728,pos,ns,5.137822954,-0.00018195,0.0000778,-2.338483649,0.019997542,neg,ns,0.889781644,Mbnl2,Mbnl2_Exon,14,120385522,120385571,120385522,120385523,50,-,CGGAAGTCCACCGGTCACTGTCCCGGGCTCAACTGCAACTCAGAAACTTC,"Exon (Mbnl2-201/Mbnl2, exon 4 of 9)",14,120275669,120431697,156029,1,Mbnl2-201,109853,Mbnl2-201;Mbnl2-204;Mbnl2-206;Mbnl2-202;Mbnl2-203;Mbnl2-208;Mbnl2-210,Mbnl2;Mbnl2;Mbnl2;Mbnl2;Mbnl2;Mbnl2;Mbnl2,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,16,105559,ENSMUSG00000022139,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10021,cg18111458,0.000057,0.0000152,3.746582692,0.000213734,gain,ns,-0.0000235,0.0000258,-0.908790714,0.364166586,neg,ns,0.014785503,0.007567238,1.953883721,0.051613992,pos,ns,1.287232546,-0.000189098,0.000260237,-0.726638188,0.467995947,neg,ns,0.430356419,Maml3,Maml3_Intron,3,51889020,51889069,51889020,51889021,50,-,CGGCTCACTGCATGTTAAACACAGTCCTCTGAAACCCTATGCCAATCCAA,"Intron (Maml3-202/Maml3, intron 1 of 4)",3,51685907,52105076,419170,2,Maml3-202,216007,Maml3-202,Maml3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,32,433586,ENSMUSG00000061143,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3678,cg23837023,0.00000599,0.0000102,0.584949188,0.55900739,gain,ns,0.0000158,0.0000174,0.908535122,0.364301329,pos,ns,-0.001942389,0.005094394,-0.38127969,0.703256905,neg,ns,0.152885995,-0.000191424,0.000175196,-1.092628765,0.275405204,neg,ns,0.791973665,Gm12067,Gm12067_Intergenic_upstream,11,24983032,24983081,24983032,24983033,50,-,CGACAGAATGCTGAAGATAGTTGTCCCAGCTACGAGATAAAAGCTACATT,Distal Intergenic,11,24552438,24553962,1525,2,Gm12067-201,-429119,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,26,58,100417843,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
73,cg23393100,-0.000000976,0.000000943,-1.035467994,0.301257461,loss,ns,-0.00000146,0.0000016,-0.90845892,0.364341507,neg,ns,-0.000179964,0.000469219,-0.383540033,0.701582293,neg,ns,0.153921381,0.0000215,0.0000161,1.331749369,0.183920909,pos,ns,0.983957661,Dnmt3a,Dnmt3a_threeUTR,12,3907642,3907691,3907690,3907691,50,-,CAACATGAGCCGCTTGGCGAGGCAGAGACTGCTGGGCCGGTCATGGAGCG,3' UTR,12,3807030,3914443,107414,1,Dnmt3a-201,100612,Dnmt3a-201;Dnmt3a-218;Dnmt3a-215;Dnmt3a-205;Dnmt3a-203;Dnmt3a-216;Dnmt3a-210,Dnmt3a;Dnmt3a;Dnmt3a;Dnmt3a;Dnmt3a;Dnmt3a;Dnmt3a,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,7,13435,ENSMUSG00000020661,conserved gene and region,12,3907621,3907720,100,*,100,11,0.65,1.053639847,0.11,3.71E-09,CpGisland,TRUE,U10,Tr-S
1029,cg07216439,-0.000011,0.0000051,-2.161331394,0.031435073,loss,ns,0.00000787,0.00000867,0.908309868,0.364420105,pos,ns,0.00460069,0.002539527,1.811632497,0.071010622,pos,ns,1.148676681,-0.0000229,0.0000873,-0.262398187,0.793188755,neg,ns,0.916712352,Gm14485,Gm14485_Intergenic_downstream,X,10997246,10997295,10997294,10997295,50,+,AGTCAGTTCAGGATGGGCTTTAAGCCAAAATTCACTTGCTTTGGGATTCG,Distal Intergenic,20,11020515,11021007,493,2,Gm14485-201,23712,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,9,547156,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22162,cg24523882,-0.00000885,0.00000555,-1.595131527,0.111701773,loss,ns,-0.00000857,0.00000943,-0.908278245,0.364436781,neg,ns,-0.007551534,0.002762899,-2.733192341,0.006632542,neg,ns,2.178319975,0.000119433,0.000095,1.25697441,0.209709135,pos,ns,0.931567299,Grm7,Grm7_threeUTR,6,111495660,111495709,111495708,111495709,50,+,TACAAACTACCACGCTTACAATCTCCATGAACCTAAGTGCATCAGTGGCG,3' UTR,6,110645581,111497090,851510,1,Grm7-204,850079,Grm7-204;Grm7-201;Grm7-202;Grm7-203;Grm7-205,Grm7;Grm7;Grm7;Grm7;Grm7,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,6,108073,ENSMUSG00000056755,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16848,cg13113656,-0.00000218,0.00000148,-1.474401291,0.141388368,loss,ns,0.00000228,0.00000251,0.907952072,0.364608819,pos,ns,0.000254798,0.000734438,0.346929291,0.72887983,pos,ns,0.137344067,-0.0000086,0.0000253,-0.340559975,0.733665536,neg,ns,0.036974472,Cltc,Cltc_fiveUTR,11,86757244,86757293,86757292,86757293,50,-,GCACCTGGAGATGCTCCTGAAAACGAATTGGCAGAATCTGGGCCATGGCG,Promoter (<=1kb),11,86694351,86757565,63215,2,Cltc-202,272,Cltc-202;Cltc-201,Cltc;Cltc,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,10,67300,ENSMUSG00000047126,conserved gene and region,11,86757142,86757299,158,*,158,11,0.620253165,0.788208617,0.069620253,0.000000471,CpGisland,TRUE,U1,Pr-A
25253,cg25137016,0.00000593,0.00000326,1.815530588,0.070408481,gain,ns,0.00000503,0.00000555,0.907771638,0.364704009,pos,ns,0.002433532,0.001624839,1.497706775,0.135226962,pos,ns,0.868936709,-0.000038,0.0000559,-0.679733777,0.497180299,neg,ns,0.094492873,Cxxc4,Cxxc4_Exon,3,134240350,134240399,134240350,134240351,50,-,CGCGTGGGGACTTTTTCCGCTATCCCGGCTTTAGGGGGCATCTCATTACC,"Exon (Cxxc4-203/Cxxc4, exon 3 of 4)",3,134236484,134259620,23137,1,Cxxc4-204,3866,Cxxc4-204;Cxxc4-203;Cxxc4-202;Cxxc4-201;Cxxc4-205,Cxxc4;Cxxc4;Cxxc4;Cxxc4;Cxxc4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,18,20,319478,ENSMUSG00000044365,mapped to different genes,3,134240265,134240649,385,*,385,21,0.587012987,0.63362069,0.054545455,5.57E-11,CpGisland,TRUE,U3,Pr-B
26982,cg25342267,-0.00000879,0.00000819,-1.073191683,0.284019807,loss,ns,-0.0000126,0.0000139,-0.907749052,0.364715926,neg,ns,-0.005249822,0.004074345,-1.288506898,0.198530381,neg,ns,0.702173023,0.0000421,0.000140116,0.300686322,0.763855259,pos,ns,0.828352231,Lhx4,Lhx4_Exon,1,155702557,155702606,155702557,155702558,50,+,CGTCCCCCACGTTGCCATAAATCCTATTGGTGTGGCCAAGTTCTGAGAGA,"Exon (Lhx4-201/Lhx4, exon 6 of 6)",1,155698031,155742027,43997,2,Lhx4-201,39421,Lhx4-201;Lhx4-202,Lhx4;Lhx4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,7,16872,ENSMUSG00000026468,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25712,cg18735834,-0.0000563,0.0000153,-3.680614107,0.000274333,loss,ns,0.0000236,0.000026,0.907628293,0.364779644,pos,ns,-0.005601198,0.0076162,-0.735432081,0.462632424,neg,ns,0.334763932,-0.000271179,0.00026192,-1.035348693,0.301313063,neg,ns,0.70625512,Lmo3,Lmo3_Intron,6,138560822,138560871,138560870,138560871,50,+,AGTCAATAGTAAATTTTATTAAAGTCATTATTTTCCTGTTACAGGCCTCG,"Intron (Lmo3-204/Lmo3, intron 1 of 4)",6,138362918,138581968,219051,2,Lmo3-204,21097,Lmo3-204,Lmo3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,38,109593,ENSMUSG00000030226,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8157,cg19577171,-0.0000175,0.0000137,-1.272808061,0.204039898,loss,ns,-0.0000212,0.0000234,-0.907458571,0.364869209,neg,ns,-0.008266959,0.006843418,-1.208015975,0.227961869,neg,ns,0.642137791,-0.0000604,0.000235345,-0.256537974,0.797705629,neg,ns,0.638562826,Pax2,Pax2_Intron,19,44802787,44802836,44802787,44802788,50,+,CGCTGTTGTTCGACAGTGTAAAATTAAATTAATAAAGCCCCCAACACAGG,"Intron (Pax2-203/Pax2, intron 5 of 9)",19,44756045,44837851,81807,1,Pax2-203,46742,Pax2-203;Pax2-201;Pax2-202,Pax2;Pax2;Pax2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,35,166,18504,ENSMUSG00000004231,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12050,cg20838429,-0.0000756,0.0000127,-5.965176588,6.66E-09,loss,yes,0.0000195,0.0000215,0.907371067,0.364915391,pos,ns,-0.010810204,0.006309263,-1.713386118,0.08764126,neg,ns,1.057291386,0.00027715,0.000216975,1.277333609,0.202440308,pos,ns,0.783410296,Fap,Fap_Promoter,2,62574491,62574540,62574539,62574540,50,-,GCACTTTCAGTAAATACAGAAGTTTAAAAATTCAACTGTCTAAACCCACG,Promoter (<=1kb),2,62500943,62574075,73133,2,Fap-202,-465,Fap-202;Fap-205;Fap-201;Fap-208;Fap-209;Fap-204;Fap-207,Fap;Fap;Fap;Fap;Fap;Fap;Fap,0;0;0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,8,14089,ENSMUSG00000000392,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20856,cg18991169,0.0000461,0.00000955,4.830420992,0.00000215,gain,ns,-0.0000147,0.0000162,-0.907124699,0.365045439,neg,ns,0.008573779,0.00475161,1.804394417,0.072139947,pos,ns,1.141824184,-0.000245659,0.000163407,-1.503351815,0.133766377,neg,ns,0.154650101,Pax6,Pax6_Promoter,2,105665191,105665240,105665191,105665192,50,-,CGTGCCTGTCTACTTTCAGTGAATTGCATCCAATCACCCCCAGGGAATTC,Promoter (3-4kb),2,105668900,105697364,28465,1,Pax6-207,-3709,Pax6-206;Pax6-207;Pax6-210;Pax6-214,Pax6;Pax6;Pax6;Pax6,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,10,78,18508,ENSMUSG00000027168,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
27148,cg00143530,0.00000266,0.00000464,0.57175652,0.567901271,gain,ns,0.00000716,0.00000789,0.907079221,0.365069448,pos,ns,-0.001949917,0.002311339,-0.843631255,0.399525993,neg,ns,0.39845496,-0.000025,0.0000795,-0.314642784,0.753244555,neg,ns,0.920237844,Gm14219,Gm14219_Intergenic_upstream,2,159515415,159515464,159515463,159515464,50,-,AATTATTATTTATTACTATTGAACAATACTATCTGCTGTGCACCAATCCG,Distal Intergenic,2,159456170,159456457,288,2,Gm14219-201,-59007,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,5,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4481,cg08145628,-0.00000077,0.00000278,-0.27666732,0.782219942,loss,ns,0.00000429,0.00000473,0.90699399,0.365114447,pos,ns,0.003408782,0.001384328,2.46240999,0.014344336,pos,ns,1.843319553,-0.000103448,0.0000476,-2.172967851,0.030539785,neg,ns,0.930648028,Srsf3,Srsf3_Exon,17,29039973,29040022,29040021,29040022,50,+,AATTCTTTTTTCTGGATCAAAGGCTGGCTGTGCATAATTGAATGGTAACG,"Exon (Srsf3-204/Srsf3, exon 3 of 4)",17,29032628,29043373,10746,1,Srsf3-202,7345,Srsf3-202;Srsf3-201;Srsf3-204;Srsf3-210;Srsf3-209;Srsf3-208;Srsf3-203;Srsf3-206;Srsf3-205;Srsf3-207,Srsf3;Srsf3;Srsf3;Srsf3;Srsf3;Srsf3;Srsf3;Srsf3;Srsf3;Srsf3,0;0;0;7300;7284;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,7,20383,ENSMUSG00000071172,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1395,cg03361732,-0.00000106,0.00000903,-0.116898391,0.90701627,loss,ns,-0.0000139,0.0000153,-0.906927425,0.365149592,neg,ns,-0.002246114,0.004494297,-0.49976984,0.617591689,neg,ns,0.209298557,-0.0000288,0.000154559,-0.186577545,0.852113913,neg,ns,0.768234264,Rpl36-ps3,Rpl36-ps3_Intergenic_upstream,12,12676787,12676836,12676787,12676788,50,-,CGCCAAGGGGGAGAGTTCTCCATGCAGAATTTCCCTGCTTAATCCGCTCT,Distal Intergenic,12,12912022,12912336,315,1,Rpl36-ps3-201,-235235,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,19,20,100043215,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21661,cg10580722,-0.00000837,0.00000207,-4.053280634,0.0000639,loss,ns,0.00000318,0.00000351,0.906914508,0.365156413,pos,ns,-0.001774473,0.001027962,-1.726204912,0.08530689,neg,ns,1.069015888,0.0000175,0.0000354,0.494178604,0.621530035,pos,ns,0.953125791,Zfhx3,Zfhx3_Exon,8,108792964,108793013,108793012,108793013,50,+,AAGCAACAAGGATTACCTGAACAGCGACGGTTCTGCCAAAAGCTCCTGCG,"Exon (Zfhx3-204/Zfhx3, exon 8 of 16)",8,107942644,108961630,1018987,1,Zfhx3-204,850320,Zfhx3-204;Zfhx3-202;Zfhx3-201,Zfhx3;Zfhx3;Zfhx3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,46,177,11906,ENSMUSG00000038872,conserved gene and region,8,108792801,108793013,213,*,213,13,0.563380282,0.791142857,0.061032864,0.000000139,CpGisland,TRUE,U10,Tr-S
1867,cg27450153,-0.000031,0.0000075,-4.136686892,0.0000454,loss,ns,0.0000116,0.0000127,0.906766014,0.365234826,pos,ns,0.000628386,0.003733875,0.168293194,0.866462373,pos,ns,0.062250292,-0.0004083,0.000128408,-3.179718188,0.001623207,neg,ns,0.640143123,Gli3,Gli3_Exon,13,15723472,15723521,15723520,15723521,50,-,ATGCAGCAGCCAACAGTCCCCCATCAGCAACTATTCCAACAGTGGGCTCG,"Exon (Gli3-201/Gli3, exon 14 of 15)",13,15463980,15730026,266047,1,Gli3-201,259492,Gli3-201,Gli3,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,21,14634,ENSMUSG00000021318,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19066,cg22869909,0.00000878,0.00000636,1.379029698,0.168879738,gain,ns,0.0000098,0.0000108,0.906625314,0.365309133,pos,ns,-0.001977058,0.003167689,-0.624132594,0.532999532,neg,ns,0.273273172,0.000175134,0.000108937,1.607668217,0.10892584,pos,ns,0.14753062,Neurod2,Neurod2_Intergenic_downstream,11,98317302,98317351,98317350,98317351,50,+,TGTCACCATTCAATCATAGCAGATGGGCTGCAGCTGTGAGCGCCAGCCCG,Distal Intergenic,11,98325415,98329648,4234,2,Neurod2-201,12297,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,22,18013,ENSMUSG00000038255,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
6448,cg24444575,0.0000959,0.00000657,14.60933493,3.86E-37,gain,yes,-0.0000101,0.0000112,-0.906579754,0.365333196,neg,ns,0.008677074,0.003268597,2.654678008,0.008348279,pos,ns,2.078403048,-0.0000121,0.000112407,-0.108075269,0.914005901,neg,ns,0.148223833,Dgki,Dgki_fiveUTR,6,37299904,37299953,37299904,37299905,50,-,CGCTGGCAGGGGCAGCAAATGGCAGCCCCTTCCCGCAGCATCCATCCGCG,Promoter (<=1kb),6,36846022,37299974,453953,2,Dgki-203,21,Dgki-203;Dgki-202;Dgki-205;Dgki-208;Dgki-201;Dgki-204,Dgki;Dgki;Dgki;Dgki;Dgki;Dgki,0;0;0;0;0;-160,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,7,320127,ENSMUSG00000038665,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
10503,cg13493426,0.0000581,0.0000124,4.672726493,0.00000444,gain,ns,0.0000192,0.0000211,0.906571507,0.365337552,pos,ns,0.009427221,0.006192366,1.52239407,0.128929758,pos,ns,0.889646832,0.0000176,0.000212955,0.082465063,0.93433012,pos,ns,0.330549278,Npas3,Npas3_Intron,12,53915820,53915869,53915868,53915869,50,+,ATGAGAGTTTATTGATTGTTTTAAGCCAGGCATGTTCTAGCAGCGAGCCG,"Intron (Npas3-204/Npas3, intron 4 of 10)",12,53248157,54069532,821376,1,Npas3-204,667663,Npas3-204;Npas3-201;Npas3-203,Npas3;Npas3;Npas3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,83,103,27386,ENSMUSG00000021010,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20138,cg10711876,-0.0000099,0.00000325,-3.051414849,0.002474588,loss,ns,-0.000005,0.00000551,-0.906558049,0.36534466,neg,ns,-0.000172007,0.001615314,-0.10648547,0.915266059,neg,ns,0.038452642,-0.0000572,0.0000556,-1.030419979,0.303616157,neg,ns,0.935859342,Calcoco1,Calcoco1_threeUTR,15,102707927,102707976,102707927,102707928,50,+,CGTCTGCTGCCTAATGAGGCTGAAAATGAGTCTGACATCGTCCTTCATCT,3' UTR,15,102706777,102722178,15402,2,Calcoco1-201,14202,Calcoco1-201;Calcoco1-203;Calcoco1-205;Calcoco1-204;Calcoco1-209;Calcoco1-207;Calcoco1-202;Calcoco1-206;Calcoco1-208,Calcoco1;Calcoco1;Calcoco1;Calcoco1;Calcoco1;Calcoco1;Calcoco1;Calcoco1;Calcoco1,0;0;0;0;2084;11740;7820;11740;6566,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,29,67488,ENSMUSG00000023055,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24582,cg15852222,0.00000318,0.00000128,2.496077849,0.013076753,gain,ns,-0.00000196,0.00000217,-0.906513639,0.365368118,neg,ns,0.00076214,0.000634782,1.200631865,0.230810655,pos,ns,0.636744147,-0.0000156,0.0000218,-0.715478778,0.474851781,neg,ns,0.964775505,Sfpq,Sfpq_Intron,4,127029651,127029700,127029699,127029700,50,-,TTACCGTAAACTAATTTTCAAATTACCCTTTTTTCCTTTCTATGTTCCCG,"Intron (Sfpq-201/Sfpq, intron 9 of 9)",4,127021324,127031236,9913,1,Sfpq-201,8327,Sfpq-201;Sfpq-203;Sfpq-206;Sfpq-205;Sfpq-204;Sfpq-202,Sfpq;Sfpq;Sfpq;Sfpq;Sfpq;Sfpq,0;6268;0;3727;3695;3206,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,12,71514,ENSMUSG00000028820,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7516,cg24402533,-0.00000878,0.00000468,-1.873757799,0.061904398,loss,ns,0.00000721,0.00000796,0.906501224,0.365374675,pos,ns,-0.004864018,0.002331222,-2.086466973,0.03775332,neg,ns,1.423044848,0.0000626,0.0000802,0.781097572,0.435341192,pos,ns,0.87904866,Dnajb5,Dnajb5_fiveUTR,4,42950723,42950772,42950771,42950772,50,+,CTCCGGTGGAGCGATCAGAGGTGAGGGGCTTGGCTGGGCATGTTTAAGCG,Promoter (<=1kb),4,42949814,42959425,9612,1,Dnajb5-201,909,Dnajb5-201;Dnajb5-203;Dnajb5-205;Dnajb5-206;Dnajb5-202;Dnajb5-207;Dnajb5-204,Dnajb5;Dnajb5;Dnajb5;Dnajb5;Dnajb5;Dnajb5;Dnajb5,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,8,56323,ENSMUSG00000036052,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
12866,cg02596500,-0.0000167,0.0000198,-0.841710904,0.400598635,loss,ns,0.0000305,0.0000337,0.906471236,0.365390516,pos,ns,-0.009964618,0.009869905,-1.009596134,0.313476187,neg,ns,0.503795444,0.000406694,0.000339425,1.198184875,0.231760287,pos,ns,0.681399046,Gm47010,Gm47010_Intergenic_downstream,14,67550553,67550602,67550601,67550602,50,-,TTCTGAATGCTATTTAAACATTGGCAGGGGGCCTCATTAAAGATGAATCG,Distal Intergenic,14,67588363,67588792,430,2,Gm47010-201,38239,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,8,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27303,cg08388980,0.000111805,0.0000173,6.460069877,4.05E-10,gain,yes,-0.0000267,0.0000294,-0.906432101,0.365411188,neg,ns,0.029512366,0.008613888,3.426137491,0.000694795,pos,ns,3.158143599,-0.000904533,0.000296231,-3.053472381,0.002458179,neg,ns,0.272181565,Hnf4a,Hnf4a_Intron,2,163555531,163555580,163555579,163555580,50,-,GGTCCCCGACCCTGCTAATACTGAGCAAACATTTGGAAAACATCATTCCG,"Intron (Hnf4a-203/Hnf4a, intron 3 of 4)",2,163546817,163559110,12294,1,Hnf4a-203,8714,Hnf4a-205;Hnf4a-203;Hnf4a-202;Hnf4a-201;Hnf4a-204,Hnf4a;Hnf4a;Hnf4a;Hnf4a;Hnf4a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,6,15378,ENSMUSG00000017950,conserved gene and region,2,163555495,163555728,234,*,234,13,0.572649573,0.677807487,0.055555556,0.000000408,CpGisland,TRUE,NA,NRS
3697,cg13048394,-0.00000287,0.00000354,-0.809187802,0.419027751,loss,ns,0.00000546,0.00000602,0.906326518,0.365466965,pos,ns,0.001882866,0.001763338,1.067785106,0.286448267,pos,ns,0.542953801,-0.0000746,0.0000606,-1.229976157,0.219638631,neg,ns,0.884552139,Zfp574,Zfp574_Exon,7,25081040,25081089,25081040,25081041,50,-,CGGCGCCATAAATGCAGCATTTGTGGCAAGATGTTCAAGAAGAAGTCTCA,"Exon (Zfp574-202/Zfp574, exon 2 of 2)",7,25077205,25083492,6288,1,Zfp574-202,3835,Zfp574-204;Zfp574-203;Zfp574-202;Zfp574-201,Zfp574;Zfp574;Zfp574;Zfp574,8473;8394;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,232976,ENSMUSG00000045252,conserved gene and region,7,25080889,25081044,156,*,156,11,0.641025641,0.688879968,0.070512821,0.000000414,CpGisland,TRUE,U10,Tr-S
12699,cg03364470,0.0000632,0.00000911,6.940118422,2.30E-11,gain,yes,-0.000014,0.0000155,-0.906239718,0.365512823,neg,ns,-0.003260056,0.004534019,-0.71902128,0.472669446,neg,ns,0.325442471,0.000349017,0.000155925,2.238369537,0.025906612,pos,ns,0.706470981,Gm6555,Gm6555_Intergenic_upstream,3,66797761,66797810,66797809,66797810,50,+,CCTTGACTCGCATAATTGAATTCAAGGTTGATTGCCTGTGACCCTCTGCG,Distal Intergenic,3,66882350,66883138,789,1,Gm6555-201,-84540,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,10,625115,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7816,cg06084735,-0.00000872,0.00000304,-2.871817694,0.004362412,loss,ns,0.00000468,0.00000516,0.90617625,0.365546357,pos,ns,0.000016,0.001512065,0.010596357,0.991552304,pos,ns,0.003684372,-0.0000287,0.000052,-0.55116298,0.581918972,neg,ns,0.031999552,Eny2,Eny2_fiveUTR,15,44428155,44428204,44428203,44428204,50,+,GCAGCCGAAGAGTGTGGTAGGTAACGGTCCTCAGCGCAAGGGTCATTTCG,Promoter (<=1kb),15,44428042,44433008,4967,1,Eny2-210,113,Eny2-210;Eny2-203;Eny2-204;Eny2-205;Eny2-201;Eny2-202;Eny2-206;Eny2-208;Eny2-209;Nudcd1-206;Nudcd1-201;Nudcd1-202;Nudcd1-204;Nudcd1-205;Nudcd1-207;Nudcd1-203,Eny2;Eny2;Eny2;Eny2;Eny2;Eny2;Eny2;Eny2;Eny2;Nudcd1;Nudcd1;Nudcd1;Nudcd1;Nudcd1;Nudcd1;Nudcd1,0;0;0;0;0;0;0;0;-4956;-282;0;-370;-267;-296;-347;-301,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,5,223527,ENSMUSG00000022338,conserved gene and region,15,44428086,44428510,425,*,425,38,0.644705882,0.8608742,0.089411765,3.12E-27,CpGisland,TRUE,U1,Pr-A
23078,cg14545043,0.0000754,0.0000142,5.316074102,0.000000203,gain,yes,-0.0000218,0.0000241,-0.906080739,0.365596825,neg,ns,0.032208143,0.007060094,4.56199912,0.00000731,pos,ns,5.136166825,-0.000863628,0.000242796,-3.557010965,0.000433718,neg,ns,0.478884721,Rnf220,Rnf220_Intron,4,117281275,117281324,117281275,117281276,50,-,CGGCCTGCAGTGTCACCTGCCACCTCGCTGAACAGTTGACAATGCAATTA,"Intron (Rnf220-201/Rnf220, intron 8 of 14)",4,117271463,117497052,225590,2,Rnf220-201,215728,Rnf220-201;Rnf220-203;Rnf220-212;Rnf220-202;Rnf220-205;Rnf220-209;Rnf220-213;Rnf220-210;Rnf220-206;Rnf220-208,Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22402,cg24561596,-0.00000231,0.00000165,-1.398191409,0.163055102,loss,ns,-0.00000254,0.0000028,-0.905952098,0.365664805,neg,ns,0.000674466,0.000820916,0.821601331,0.411935253,pos,ns,0.38517104,-0.000109128,0.0000282,-3.865499254,0.000135068,neg,ns,0.960766366,Copb1,Copb1_Exon,7,114219546,114219595,114219546,114219547,50,+,CGGCCCACATCTGACGGAATTCTGCATCAGTGCAAGTTGCAGGCTGGATA,"Exon (Copb1-201/Copb1, exon 19 of 22)",7,114215559,114254711,39153,2,Copb1-201,35116,Copb1-201;Copb1-202,Copb1;Copb1,0;-1385,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,70349,ENSMUSG00000030754,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5750,cg21183326,0.000164121,0.0000165,9.932141766,2.30E-20,gain,yes,-0.0000254,0.0000281,-0.905875876,0.365705088,neg,ns,0.009245025,0.008224298,1.124111094,0.261835594,pos,ns,0.581971316,-0.000265404,0.000282833,-0.938375981,0.348781752,neg,ns,0.427829247,Kctd15,Kctd15_Exon,7,34652956,34653005,34653004,34653005,50,-,CGCTCGCAGTTGTTCGGCTCTCTGGGGGTGATTAAACTGGCTGAGCTGCG,"Exon (Kctd15-204/Kctd15, exon 1 of 2)",7,34639014,34654398,15385,2,Kctd15-202,1393,Kctd15-202;Kctd15-203;Kctd15-201;Kctd15-206;Kctd15-208;Kctd15-204;Kctd15-205;Kctd15-207,Kctd15;Kctd15;Kctd15;Kctd15;Kctd15;Kctd15;Kctd15;Kctd15,0;0;0;-4212;0;0;0;3727,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,25,233107,ENSMUSG00000030499,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
13280,cg18025543,-0.00000133,0.00000151,-0.879043894,0.380058335,loss,ns,0.00000232,0.00000256,0.905802714,0.365743756,pos,ns,0.001832651,0.000750472,2.441998526,0.015164799,pos,ns,1.81916333,-0.0000467,0.0000258,-1.810465679,0.071191685,neg,ns,0.951073345,Ank3,Ank3_Exon,10,69992721,69992770,69992721,69992722,50,+,CGCACGCCTATAAAAATGGGAATTTCTGCATCCACCATGACCATGAAGAA,"Exon (Ank3-244/Ank3, exon 6 of 9)",10,69398996,70023957,624962,1,Ank3-247,593725,Ank3-247;Ank3-231;Ank3-210;Ank3-239;Ank3-240;Ank3-220;Ank3-201;Ank3-202;Ank3-203;Ank3-204;Ank3-206;Ank3-233;Ank3-221;Ank3-232;Ank3-228;Ank3-205;Ank3-215;Ank3-237;Ank3-242;Ank3-208;Ank3-227;Ank3-207;Ank3-230;Ank3-219;Ank3-244;Ank3-213;Ank3-224;Ank3-236;Ank3-225;Ank3-243;Ank3-235,Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,13,11735,ENSMUSG00000069601,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U14,Hc-H
19967,cg12813033,0.0000844,0.00000758,11.12543552,2.04E-24,gain,yes,-0.0000117,0.0000129,-0.905692177,0.365802184,neg,ns,0.007172324,0.003773877,1.900518908,0.058292545,pos,ns,1.234386985,-0.000139595,0.000129783,-1.075601556,0.282941895,neg,ns,0.478298638,Etv4,Etv4_Intergenic_upstream,11,101814755,101814804,101814755,101814756,50,+,CGCCTCCCTGAGGACTATTACGGTTCTATTAGGCAAGGCCGCAGACTTCC,Distal Intergenic,11,101769747,101785371,15625,2,Etv4-202,-29384,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,5,18612,ENSMUSG00000017724,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
18705,cg05817223,-0.0000114,0.00000481,-2.366933098,0.018550341,loss,ns,-0.0000074,0.00000817,-0.905629346,0.365835397,neg,ns,-0.000734756,0.002392425,-0.307117823,0.758959896,neg,ns,0.119781172,-0.00010834,0.0000823,-1.316804658,0.188876727,neg,ns,0.893779193,Tenm4,Tenm4_Exon,7,96777868,96777917,96777868,96777869,50,-,CGAATGCCACTGCTCTGTGGGATGGGGAGGCACCAACTGCGAGACCCCCA,"Exon (Tenm4-201/Tenm4, exon 16 of 33)",7,96171246,96908569,737324,1,Tenm4-201,606622,Tenm4-201;Tenm4-203;Tenm4-202;Tenm4-210,Tenm4;Tenm4;Tenm4;Tenm4,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,17,26,23966,ENSMUSG00000048078,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U5,En-Sd
710,cg09683967,0.000000332,0.00000122,0.272872432,0.785132961,gain,ns,-0.00000187,0.00000207,-0.905545801,0.365879563,neg,ns,-0.000272532,0.000605988,-0.449731328,0.653218477,neg,ns,0.184941539,-0.000015,0.0000208,-0.721040249,0.471428159,neg,ns,0.966782543,Mios,Mios_Exon,6,8215520,8215569,8215520,8215521,50,-,CGTGTTGCTTCCTTCTATGAAGGTCAGGTTGCAATATGGGATCTTAGAAA,"Exon (Mios-201/Mios, exon 3 of 12)",6,8209222,8236274,27053,1,Mios-201,6298,Mios-201,Mios,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,252875,ENSMUSG00000042447,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14196,cg01171212,0.000119268,0.00000958,12.44759933,4.04E-29,gain,yes,0.0000147,0.0000163,0.905542879,0.365881108,pos,ns,0.007399116,0.004768848,1.551552056,0.121789721,pos,ns,0.914389366,-0.000121182,0.000164,-0.738915717,0.46051727,neg,ns,0.171561998,Gm28230,Gm28230_threeUTR,2,74746513,74746562,74746513,74746514,50,+,CGGCGCATGAAGTACAAGAAGGACCAGAAGGCCAAGGGCATCCTGCACTC,3' UTR,2,74726728,74747918,21191,1,Gm28230-201,19785,Gm28230-201;Hoxd3-203;Hoxd3-205;Hoxd3-202;Hoxd3-201;Hoxd3-204;Hoxd3-206,Gm28230;Hoxd3;Hoxd3;Hoxd3;Hoxd3;Hoxd3;Hoxd3,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,23,,NA,mapped to different genes,2,74746429,74746517,89,*,89,10,0.629213483,1.148387097,0.112359551,1.95E-08,CpGisland,TRUE,U13,Hc-P
16449,cg21087351,-0.000013,0.00000597,-2.185457565,0.029603421,loss,ns,0.00000918,0.0000101,0.905409224,0.365951773,pos,ns,0.006864272,0.00297186,2.309755747,0.021558462,pos,ns,1.666382226,-0.000294179,0.000102202,-2.878402146,0.004274728,neg,ns,0.90501012,Ppm1b,Ppm1b_Exon,17,85013523,85013572,85013571,85013572,50,+,CTAGTTTGTCTACTGACACTGGGGTCTTGAATCTTAAAAAAAGGCCTCCG,"Exon (Ppm1b-201/Ppm1b, exon 6 of 6)",17,84956741,85023991,67251,1,Ppm1b-203,56782,Ppm1b-203;Ppm1b-201;Ppm1b-202;Ppm1b-205;Ppm1b-206;Ppm1b-204;Ppm1b-208,Ppm1b;Ppm1b;Ppm1b;Ppm1b;Ppm1b;Ppm1b;Ppm1b,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,19043,ENSMUSG00000061130,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1413,cg27699274,0.0000607,0.00000788,7.704459776,1.79E-13,gain,yes,-0.0000121,0.0000134,-0.905398317,0.36595754,neg,ns,0.011848095,0.003923797,3.019547955,0.002741916,pos,ns,2.5619458,-0.000394301,0.000134939,-2.922070015,0.003732705,neg,ns,0.161844001,Rpl36-ps3,Rpl36-ps3_Intergenic_upstream,12,12725213,12725262,12725213,12725214,50,-,CGTGTTCATGCGTCCATTCAGATCCATCACCCTGAGATAAACTGTGAATA,Distal Intergenic,12,12912022,12912336,315,1,Rpl36-ps3-201,-186809,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,19,20,100043215,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23082,cg14132810,0.0000518,0.00000997,5.196004327,0.00000037,gain,yes,-0.0000153,0.0000169,-0.905369242,0.365972913,neg,ns,0.025049365,0.004962665,5.047563499,0.000000764,pos,ns,6.116729845,-0.000542403,0.000170666,-3.178164209,0.001631654,neg,ns,0.57429859,Rnf220,Rnf220_Intron,4,117281329,117281378,117281377,117281378,50,+,GTGTGGAGGCAGGGAGTTGGCGTGTGTCAAACGCACTTAGCCACTTTCCG,"Intron (Rnf220-201/Rnf220, intron 8 of 14)",4,117271463,117497052,225590,2,Rnf220-201,215674,Rnf220-201;Rnf220-203;Rnf220-212;Rnf220-202;Rnf220-205;Rnf220-209;Rnf220-213;Rnf220-210;Rnf220-206;Rnf220-208,Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,4,117281349,117281438,90,*,90,8,0.555555556,1.18226601,0.088888889,0.00000534,CpGisland,TRUE,NA,NRS
11920,cg04446274,-0.000008,0.00000265,-3.022476477,0.002716286,loss,ns,-0.00000407,0.0000045,-0.905368656,0.365973223,neg,ns,-0.000486381,0.00131725,-0.36923957,0.71220124,neg,ns,0.147397274,-0.0000688,0.0000453,-1.519568664,0.129638644,neg,ns,0.954498797,Tank,Tank_Intergenic_downstream,2,61667886,61667935,61667886,61667887,50,+,CGTAGCATTTGTGATACATATAGGTTAGAGTGACATTTATATAATGGTGT,Distal Intergenic,2,61643831,61649977,6147,1,Tank-211,24055,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,17,21353,ENSMUSG00000064289,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21344,cg18503070,-0.0000327,0.00000735,-4.453993813,0.0000118,loss,ns,-0.0000113,0.0000125,-0.905126866,0.366101086,neg,ns,-0.005677653,0.00365844,-1.551932971,0.121698543,neg,ns,0.914714621,0.0000786,0.000125813,0.624811315,0.53255451,pos,ns,0.710107824,Kcnc4,Kcnc4_Intron,3,107442352,107442401,107442352,107442353,50,+,CGTTAGGTAAATGAATACACTTAATTATAGAAATTAGATGAGTCTCCGGT,"Intron (Kcnc4-201/Kcnc4, intron 3 of 3)",3,107438303,107459552,21250,2,Kcnc4-201,17151,Kcnc4-201;Kcnc4-202,Kcnc4;Kcnc4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,12,99738,ENSMUSG00000027895,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23504,cg18700826,-0.00000832,0.00000189,-4.400055986,0.0000149,loss,ns,0.00000291,0.00000321,0.904974367,0.366181744,pos,ns,0.000614373,0.000941355,0.652647628,0.514467149,pos,ns,0.288642352,0.00000116,0.0000324,0.035752112,0.971503028,pos,ns,0.947524026,Gm18441,Gm18441_Intergenic_downstream,12,118726131,118726180,118726131,118726132,50,-,CGCTAATCAGGCCAGATTTGGAGCCCTTGCGCCAGCAACATTTCATGCAC,Distal Intergenic,12,118732439,118733055,617,2,Gm18441-201,6924,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,9,100417195,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7536,cg24208901,-0.00000393,0.00000197,-1.992493606,0.047193575,loss,ns,0.00000303,0.00000335,0.904720626,0.366315975,pos,ns,-0.000708499,0.00098161,-0.721772496,0.470978412,neg,ns,0.326998999,0.0000218,0.0000338,0.646032585,0.518736193,pos,ns,0.954725407,Fam214b,Fam214b_fiveUTR,4,43037132,43037181,43037180,43037181,50,-,GCAGTCTGATCCATGCCTGCTGCACTGGCAAGGTGACTGCCACCATTCCG,5' UTR,4,43032414,43040288,7875,2,Fam214b-204,3107,Fam214b-204;Fam214b-205;Fam214b-202;Fam214b-203;Fam214b-201;Fam214b-207;Fam214b-210;Fam214b-206;Fam214b-209;Fam214b-208,Fam214b;Fam214b;Fam214b;Fam214b;Fam214b;Fam214b;Fam214b;Fam214b;Fam214b;Fam214b,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,5,230088,ENSMUSG00000036002,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
22795,cg21716905,-0.0000143,0.00000437,-3.280826556,0.001153012,loss,ns,-0.00000672,0.00000743,-0.904691731,0.366331262,neg,ns,-0.00079848,0.002176928,-0.366792059,0.714024365,neg,ns,0.146286968,-0.00000111,0.0000749,-0.014851236,0.988160417,neg,ns,0.941945615,Meis2,Meis2_Intron,2,115961707,115961756,115961755,115961756,50,+,ACTTCACTCGTCCATACTTTTAATATATTTTGTCTGCATGAAGCAGATCG,"Intron (Meis2-201/Meis2, intron 8 of 11)",2,115863064,116065047,201984,2,Meis2-201,103291,Meis2-201;Meis2-203;Meis2-205;Meis2-206;Meis2-204;Meis2-202;Meis2-216;Meis2-217,Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,45,97,17536,ENSMUSG00000027210,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9574,cg02533268,0.0000231,0.00000385,6.010613337,5.19E-09,gain,yes,-0.00000592,0.00000654,-0.904599914,0.366379844,neg,ns,0.004328336,0.001916893,2.257995265,0.024641148,pos,ns,1.608339071,-0.0000648,0.0000659,-0.982619996,0.326560758,neg,ns,0.023201838,Foxg1,Foxg1_Exon,12,49385330,49385379,49385330,49385331,50,+,CGCGCCTCACCTCCACCGGCCTCACCTTCATGGACCGCGCCGGCTCCCTC,"Exon (Foxg1-204/Foxg1, exon 1 of 1)",12,49382883,49386855,3973,1,Foxg1-204,2447,Foxg1-202;Foxg1-203;Foxg1-204;Foxg1-201;Gm43517-201,Foxg1;Foxg1;Foxg1;Foxg1;Gm43517,0;2530;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,27,15228,ENSMUSG00000020950,conserved gene and region,12,49385116,49385808,693,*,693,72,0.670995671,0.980968858,0.103896104,4.68E-56,CpGisland,TRUE,U13,Hc-P
3296,cg21552684,-0.00000416,0.00000355,-1.171361648,0.242352977,loss,ns,0.00000546,0.00000604,0.904567557,0.366396964,pos,ns,-0.004002412,0.001769344,-2.262088872,0.024384082,neg,ns,1.612893594,0.000133671,0.0000608,2.196819127,0.028773288,pos,ns,0.893952587,Gm11889,Gm11889_Intergenic_downstream,4,23512135,23512184,23512135,23512136,50,+,CGGCTGCCTTGCGCTAATTAATCACTCTGGTATTTAGGACCATTCAAGCA,Distal Intergenic,4,23517362,23518440,1079,2,Gm11889-201,6256,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,8,383998,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12891,cg27065597,0.00000704,0.00000614,1.145740362,0.252786287,gain,ns,-0.00000944,0.0000104,-0.904531323,0.366416138,neg,ns,-0.00432972,0.003057724,-1.415994294,0.157781122,neg,ns,0.80194496,-0.000103685,0.000105155,-0.986021304,0.324891608,neg,ns,0.793240387,Igf1r,Igf1r_Exon,7,68004295,68004344,68004343,68004344,50,+,AAGACCACCATCAACAATGAGTACAACTACCGCTGCTGGACCACAAACCG,"Exon (Igf1r-201/Igf1r, exon 2 of 21)",7,67952827,68233668,280842,1,Igf1r-201,51468,Igf1r-201,Igf1r,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,9,16001,ENSMUSG00000005533,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
751,cg07107420,0.000101861,0.0000115,8.827784271,8.01E-17,gain,yes,-0.0000177,0.0000196,-0.90449441,0.366435671,neg,ns,-0.006212799,0.005742918,-1.08181925,0.280173661,neg,ns,0.552572694,0.000264771,0.000197498,1.34062516,0.181023771,pos,ns,0.718830903,Glcci1,Glcci1_Intron,6,8511683,8511732,8511683,8511684,50,+,CGTGATCGCCCTAATAATGACCACAACTGAACACACATCTTTGGCTGTAT,"Intron (Gm45062-201/Gm45062, intron 4 of 10)",6,8509600,8597548,87949,1,Glcci1-201,2083,Glcci1-201;Glcci1-205;Gm45062-201,Glcci1;Glcci1;Gm45062,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,2,170772,ENSMUSG00000029638,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
24981,cg03700312,-4.23E-08,0.00000129,-0.03279282,0.973860908,loss,ns,0.00000198,0.00000219,0.904428103,0.36647076,pos,ns,0.000212305,0.000642728,0.330318092,0.741382745,pos,ns,0.129957526,0.0000185,0.0000221,0.838708808,0.402278983,pos,ns,0.964527225,Fgfr2,Fgfr2_threeUTR,7,130909562,130909611,130909610,130909611,50,+,AATCTTAGCTTTGCACTGTGTTCCAGATGCGGCAGGCCAGAAGGCTGTCG,3' UTR,7,130162451,133123350,2960900,2,Fgfr2-217,2213739,Fgfr2-217;Plekha1-203;Plekha1-202;Plekha1-211;Plekha1-201;Plekha1-210;Plekha1-206;Plekha1-208;Plekha1-204;Plekha1-205,Fgfr2;Plekha1;Plekha1;Plekha1;Plekha1;Plekha1;Plekha1;Plekha1;Plekha1;Plekha1,0;0;0;0;0;12571;0;7317;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,9,79,14183,ENSMUSG00000030849,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15927,cg21097860,0.00000964,0.00000792,1.21700536,0.224527857,gain,ns,-0.0000122,0.0000135,-0.904369815,0.366501608,neg,ns,0.000299478,0.003943997,0.075932712,0.939521611,pos,ns,0.027093226,-0.0000554,0.000135634,-0.408095397,0.683485358,neg,ns,0.675866409,Gm5452,Gm5452_Intergenic_downstream,13,83884870,83884919,83884918,83884919,50,+,GTAACTGAGCCGGCCCACAGAGAATGGGCCCACTTTGTAGCGACACAGCG,Distal Intergenic,13,83832340,83833336,997,1,Gm5452-201,52530,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,16,432789,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18351,cg07339555,0.0000101,0.00000227,4.463980145,0.0000113,gain,ns,-0.00000349,0.00000386,-0.904310857,0.366532811,neg,ns,-0.002417478,0.001130275,-2.138839852,0.033229788,neg,ns,1.47847243,0.000172305,0.0000389,4.432849311,0.0000129,pos,ns,0.054776847,Otp,Otp_Promoter,13,94869067,94869116,94869115,94869116,50,-,TAAATCACGGTTTAATCGAGCCCACATGGAGGGCAGCAGCACTAATTACG,Promoter (6-7kb),13,94875602,94885130,9529,1,Otp-201,-6535,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,27,34,18420,ENSMUSG00000021685,conserved gene and region,13,94869063,94869234,172,*,172,30,0.819767442,1.155913979,0.174418605,1.73E-31,CpGisland,TRUE,U3,Pr-B
1240,cg06537244,-0.00000243,0.00000178,-1.364329737,0.173453428,loss,ns,0.00000274,0.00000303,0.904244423,0.366567973,pos,ns,0.002242339,0.000887763,2.525831911,0.012040436,pos,ns,1.91935779,-0.0000353,0.0000305,-1.156673792,0.248296211,neg,ns,0.068881063,Zfr,Zfr_fiveUTR,15,12117871,12117920,12117871,12117872,50,+,CGGGTGAGAGTTCAGAGTTCAGCAGCAGCAGCCCGAGCCCATGATTCCCA,Promoter (<=1kb),15,12117831,12185683,67853,1,Zfr-201,40,Zfr-201;Zfr-210;Zfr-203;Zfr-204;Zfr-202,Zfr;Zfr;Zfr;Zfr;Zfr,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,12,22763,ENSMUSG00000022201,conserved gene and region,15,12117482,12117905,424,*,424,42,0.672169811,0.880886427,0.099056604,5.28E-32,CpGisland,TRUE,U1,Pr-A
20400,cg16800641,0.0000582,0.00000769,7.559387071,4.61E-13,gain,yes,0.0000118,0.0000131,0.904205752,0.366588442,pos,ns,0.011718758,0.003829163,3.060396651,0.002403692,pos,ns,2.619121222,-0.000372981,0.000131685,-2.832381949,0.004922746,neg,ns,0.255526998,Hoxc4,Hoxc4_Intron,15,103029381,103029430,103029429,103029430,50,-,GTCTAACCAATATTAAAATGCGGCCACTTTTTAAAAAGCCACTTTAAACG,"Intron (Hoxc4-202/Hoxc4, intron 1 of 3)",15,103018934,103036405,17472,1,Hoxc4-202,10447,Hoxc4-202;Hoxc4-201,Hoxc4;Hoxc4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,91,15423,ENSMUSG00000075394,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
15601,cg06477567,-0.0000354,0.00000626,-5.665425442,3.35E-08,loss,yes,-0.00000961,0.0000106,-0.90417103,0.366606822,neg,ns,-0.00705156,0.003114103,-2.26439535,0.024240273,neg,ns,1.615462488,0.00000823,0.000107094,0.076852446,0.938790504,pos,ns,0.88720961,Nfib,Nfib_Intergenic_downstream,4,82153871,82153920,82153919,82153920,50,+,GTCTTTTGTGGCACCATTAGATCTGCCTAGTGTGGGACACGACCCCCTCG,Distal Intergenic,4,82498544,82499316,773,2,Nfib-211,345396,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,66,18028,ENSMUSG00000008575,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6600,cg15755084,0.0000404,0.00000757,5.338140546,0.000000182,gain,yes,-0.0000116,0.0000129,-0.904107626,0.366640384,neg,ns,-0.000152293,0.003768829,-0.040408474,0.967793486,neg,ns,0.014217305,-0.0000932,0.00012961,-0.719124853,0.472605724,neg,ns,0.079616475,Msx1,Msx1_Exon,5,37824276,37824325,37824276,37824277,50,-,CGGAGTCCTCCACTTTGACACCGAGTGGCAAAGAAGTCATGTCAGCAGCC,Promoter (<=1kb),5,37820485,37824583,4099,2,Msx1-201,258,Msx1-201;Msx1-202,Msx1;Msx1,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,14,17701,ENSMUSG00000048450,conserved gene and region,5,37824210,37824807,598,*,598,58,0.704013378,0.783288166,0.096989967,2.08E-43,CpGisland,TRUE,U3,Pr-B
25454,cg03164843,-0.0000239,0.0000111,-2.164733957,0.031170974,loss,ns,0.000017,0.0000188,0.904010477,0.366691814,pos,ns,0.002665565,0.005504021,0.484294086,0.628519143,pos,ns,0.20168149,0.000193493,0.000189283,1.022240502,0.307464145,pos,ns,0.738642604,Ephb2,Ephb2_Intron,4,136734508,136734557,136734508,136734509,50,-,CGACAGGGACAGTTAATTAAAGCAGATTAGCGCGAGACTAATTAGGGACA,"Intron (Ephb2-202/Ephb2, intron 3 of 15)",4,136647539,136835988,188450,2,Ephb2-202,101431,Ephb2-202;Ephb2-201;Ephb2-203,Ephb2;Ephb2;Ephb2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,15,13844,ENSMUSG00000028664,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
184,cg10243128,-0.000005,0.00000117,-4.262374649,0.0000269,loss,ns,-0.0000018,0.00000199,-0.903761237,0.366823778,neg,ns,-0.000583492,0.000584046,-0.999050978,0.318549178,neg,ns,0.496823512,0.00000976,0.0000201,0.485970517,0.627331397,pos,ns,0.035416554,Casd1,Casd1_Exon,6,4601183,4601232,4601231,4601232,50,-,CTACAACCTGGGCAAGCGGGAGATCAACCACTACTTCAGCGTGAGGAGCG,Promoter (<=1kb),6,4601203,4621132,19930,1,Casd1-202,0,Casd1-201;Casd1-204;Casd1-203;Casd1-202,Casd1;Casd1;Casd1;Casd1,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,6,213819,ENSMUSG00000015189,conserved gene and region,6,4600919,4601684,766,*,766,100,0.791122715,0.834786399,0.130548303,8.09E-89,CpGisland,TRUE,U1,Pr-A
4502,cg02818198,-0.000053,0.00000945,-5.605598891,4.59E-08,loss,yes,0.0000145,0.0000161,0.903668199,0.366873046,pos,ns,-0.002319935,0.004705138,-0.493064158,0.622316336,neg,ns,0.205988799,0.000315797,0.000161809,1.951659153,0.051878953,pos,ns,0.164866547,Dpf1,Dpf1_Exon,7,29309676,29309725,29309676,29309677,50,-,CGCCCGCTGTTGGAGGAAGAAACGGAGACTCAACATCCTGGAGGACCCCA,"Exon (Dpf1-204/Dpf1, exon 3 of 12)",7,29303951,29317264,13314,1,Dpf1-204,5725,Dpf1-204;Dpf1-201;Dpf1-203;Dpf1-208;Dpf1-202;Dpf1-210;Dpf1-207;Dpf1-205;Dpf1-209;Dpf1-206,Dpf1;Dpf1;Dpf1;Dpf1;Dpf1;Dpf1;Dpf1;Dpf1;Dpf1;Dpf1,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,4,29861,ENSMUSG00000030584,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14425,cg25562107,-0.00000255,0.000000899,-2.840861456,0.004797017,loss,ns,-0.00000138,0.00000153,-0.903476229,0.366974718,neg,ns,-0.000275471,0.000447407,-0.615705247,0.538540849,neg,ns,0.268781349,-0.0000325,0.0000154,-2.109299481,0.035720287,neg,ns,0.012016699,Pdcd10,Pdcd10_fiveUTR,3,75556796,75556845,75556796,75556797,50,-,CGCCGGAAGGACCCAAGAGGAACCAGGCGTTGTCCGGAATCCTGCCCAGC,Promoter (<=1kb),3,75517461,75556811,39351,2,Pdcd10-201,0,Pdcd10-205;Pdcd10-201;Pdcd10-206;Pdcd10-202;Serpini1-203;Serpini1-201;Serpini1-204;Serpini1-202,Pdcd10;Pdcd10;Pdcd10;Pdcd10;Serpini1;Serpini1;Serpini1;Serpini1,0;0;-37;0;-702;-702;-716;-733,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,1,56426,ENSMUSG00000027835,conserved gene and region,3,75556342,75556896,555,*,555,48,0.679279279,0.791914388,0.086486487,1.59E-33,CpGisland,TRUE,U1,Pr-A
9659,cg15790852,-0.00000441,0.00000113,-3.8847728,0.000125249,loss,ns,0.00000174,0.00000193,0.903465607,0.366980344,pos,ns,0.000328332,0.00056438,0.581756783,0.561153316,pos,ns,0.250918467,-0.00000404,0.0000194,-0.208282439,0.835145219,neg,ns,0.03527969,Cnot6,Cnot6_fiveUTR,11,49712412,49712461,49712412,49712413,50,+,CGGGGTCTGCCCTGTGGAACCACCATACCAGTCCCGCCCGCTGCTGCAGC,Promoter (<=1kb),11,49671503,49712723,41221,2,Cnot6-203,262,Cnot6-203;Cnot6-201,Cnot6;Cnot6,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,5,104625,ENSMUSG00000020362,conserved gene and region,11,49711979,49713020,1042,*,1042,132,0.719769674,1.021143909,0.126679463,5.01E-115,CpGisland,TRUE,U1,Pr-A
8054,cg08406999,0.0000144,0.00000844,1.701994882,0.089758869,gain,ns,-0.0000129,0.0000143,-0.903152664,0.367146124,neg,ns,-0.001177477,0.004198723,-0.280436956,0.779329342,neg,ns,0.108278972,0.000188645,0.000144394,1.306464631,0.192363045,pos,ns,0.122472915,Phldb1,Phldb1_Exon,9,44708396,44708445,44708444,44708445,50,+,TTCTCAGCTGCTCCTGTAACTGTTCCCGCACTGACTCGGGGCAGTTATCG,Promoter (<=1kb),9,44703573,44708427,4855,2,Phldb1-203,0,Phldb1-214;Phldb1-213;Phldb1-218;Phldb1-207;Phldb1-212;Phldb1-201;Phldb1-215;Phldb1-210;Phldb1-204;Phldb1-217;Phldb1-203,Phldb1;Phldb1;Phldb1;Phldb1;Phldb1;Phldb1;Phldb1;Phldb1;Phldb1;Phldb1;Phldb1,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,102693,ENSMUSG00000048537,conserved gene and region,9,44708422,44708705,284,*,284,25,0.690140845,0.771403738,0.088028169,6.38E-18,CpGisland,TRUE,NA,NRS
24091,cg05532671,0.0000342,0.00000267,12.79298347,2.23E-30,gain,yes,0.0000041,0.00000454,0.90313975,0.367152966,pos,ns,0.005283959,0.001330157,3.972433227,0.0000885,pos,ns,4.052957888,-0.0000324,0.0000457,-0.708847522,0.478951823,neg,ns,0.080539088,Zic5,Zic5_fiveUTR,14,122465465,122465514,122465465,122465466,50,-,CGATTGGCAGAGTGAACACCACATTTGAGCTGCACAGTGGGACCGAGATT,Promoter (<=1kb),14,122456795,122465677,8883,2,Zic5-201,163,Zic5-201,Zic5,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,26,65100,ENSMUSG00000041703,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
19783,cg12956982,-0.00000083,0.000000748,-1.110063289,0.267832072,loss,ns,0.00000115,0.00000127,0.903107467,0.36717007,pos,ns,0.000443241,0.000372044,1.191366113,0.234421223,pos,ns,0.630003073,-0.00000616,0.0000128,-0.481756895,0.630318574,neg,ns,0.023883952,Msl2,Msl2_fiveUTR,9,101075273,101075322,101075321,101075322,50,+,TCTGCAATGAACCCCGTGAATGCTACTGCTCTCTACATTTCCGCGAGCCG,5' UTR,9,101074101,101101785,27685,1,Msl2-202,1172,Msl2-202;Msl2-201,Msl2;Msl2,0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,19,77853,ENSMUSG00000066415,conserved gene but different region,9,101075182,101075428,247,*,247,16,0.514170041,0.987506247,0.064777328,1.37E-09,CpGisland,TRUE,U1,Pr-A
16728,cg04178407,0.00000634,0.00000375,1.688289255,0.092361374,gain,ns,-0.00000576,0.00000638,-0.903104316,0.36717174,neg,ns,0.004541252,0.001868223,2.430787448,0.015632887,pos,ns,1.805960821,-0.000255528,0.0000642,-3.977205148,0.0000868,neg,ns,0.903828026,Med13,Med13_Exon,11,86291054,86291103,86291054,86291055,50,+,CGGCCAGCCATTTTATGAAATTGTTGCCAAGTGAGAGGACCCTGAACACC,"Exon (Med13-201/Med13, exon 17 of 30)",11,86267033,86357602,90570,2,Med13-201,66499,Med13-201,Med13,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,12,327987,ENSMUSG00000034297,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11406,cg22201504,0.000000442,0.000016,0.02765458,0.977955444,gain,ns,0.0000245,0.0000272,0.903079429,0.367184926,pos,ns,0.004878831,0.007955829,0.613239765,0.540167474,pos,ns,0.26747157,0.000230169,0.0002736,0.84125904,0.400851284,pos,ns,0.355083725,Zic3,Zic3_Exon,X,58033372,58033421,58033420,58033421,50,+,TTTCAAATGTGAATTTGAAGGCTGTGACAGACGCTTTGCCAACAGCAGCG,"Exon (Zic3-201/Zic3, exon 2 of 3)",20,58030643,58036559,5917,1,Zic3-201,2729,Zic3-204;Zic3-201;Zic3-203;Zic3-202,Zic3;Zic3;Zic3;Zic3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,17,22773,ENSMUSG00000067860,conserved gene and region,X,58033387,58033635,249,*,249,20,0.546184739,1.096191944,0.080321285,1.23E-13,CpGisland,TRUE,U13,Hc-P
20123,cg03843584,0.000139889,0.0000146,9.584741568,3.16E-19,gain,yes,-0.0000224,0.0000248,-0.903077965,0.367185702,neg,ns,0.017823523,0.007264073,2.453654076,0.014691346,pos,ns,1.832938423,-0.000428188,0.000249811,-1.714048292,0.08751942,neg,ns,0.058376426,Atp5g2,Atp5g2_Promoter,15,102672380,102672429,102672428,102672429,50,-,CCCGGATGAGGCCCCGAGTTTAATTATCCTCGCGGAGGAATTTCAATGCG,Promoter (<=1kb),15,102665801,102672352,6552,2,Atp5g2-203,-77,Atp5g2-202;Atp5g2-201;Atp5g2-204;Atp5g2-203,Atp5g2;Atp5g2;Atp5g2;Atp5g2,-1253;-4631;-4637;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,10,18,67942,ENSMUSG00000062683,mapped to different genes,15,102672078,102672489,412,*,412,37,0.621359223,0.940117176,0.089805825,1.33E-26,CpGisland,TRUE,U1,Pr-A
17814,cg23507236,-0.00000238,0.0000129,-0.184006181,0.85412891,loss,ns,0.0000198,0.000022,0.903077464,0.367185967,pos,ns,-0.000122904,0.006434504,-0.019100845,0.984772946,neg,ns,0.006663891,0.000207947,0.000221282,0.939738042,0.348083592,pos,ns,0.167547692,Grip2,Grip2_Intergenic_upstream,6,91839649,91839698,91839649,91839650,50,+,CGTTGTCTCCTAGGTAACCGGCATAGGGACACATCAGCTAGCTGGGTACC,Distal Intergenic,6,91761509,91827250,65742,2,Grip2-204,-12399,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,243547,ENSMUSG00000030098,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
962,cg05409385,0.00000168,0.00000873,0.192864779,0.847191161,gain,ns,0.0000134,0.0000148,0.903069202,0.367190345,pos,ns,0.009699865,0.004345051,2.232393749,0.026302979,pos,ns,1.579995054,-0.000196076,0.000149426,-1.312191888,0.190426174,neg,ns,0.563068758,Kin,Kin_Exon,2,10090243,10090292,10090291,10090292,50,+,ACTAAAAGGGTCCACAACAACATTGTCTACAACGAATACATCAGCCACCG,"Exon (Kin-202/Kin, exon 3 of 4)",2,10080593,10091819,11227,1,Kin-202,9650,Itih2-201;Kin-202;Kin-201;Kin-203,Itih2;Kin;Kin;Kin,40371;0;0;-5,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,16588,ENSMUSG00000037262,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3300,cg23800888,-0.0000527,0.0000114,-4.606674693,0.00000598,loss,ns,-0.0000175,0.0000194,-0.902977393,0.367238993,neg,ns,0.015034143,0.005688734,2.642792456,0.008640214,pos,ns,2.063475489,-0.000336025,0.000195635,-1.717610418,0.086866339,neg,ns,0.878192641,Srpk2,Srpk2_threeUTR,5,23513957,23514006,23513957,23513958,50,+,CGATTGAAGAATTCCCGAGAATATTTTCCAGATAGAGCAAAGTGCCTTGG,3' UTR,5,23503264,23616534,113271,2,Srpk2-201,102528,Srpk2-201;Srpk2-204,Srpk2;Srpk2,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,8,20817,ENSMUSG00000062604,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13024,cg17333429,-0.0000681,0.0000115,-5.924003733,8.35E-09,loss,yes,0.0000176,0.0000195,0.902830293,0.367316947,pos,ns,-0.011848494,0.005717623,-2.072276162,0.039066096,neg,ns,1.408199991,0.0000727,0.000196629,0.369684002,0.711870365,pos,ns,0.821469053,Gm4842,Gm4842_Intergenic_upstream,18,69215925,69215974,69215973,69215974,50,+,CATTTAACCTCTGCCGTATTATTAAACACATCAAAATATAATGACACTCG,Distal Intergenic,18,69256288,69257122,835,1,Gm4842-201,-40314,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,10,225681,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7095,cg22668960,-0.000076,0.0000154,-4.937047159,0.0000013,loss,yes,0.0000236,0.0000261,0.902829765,0.367317227,pos,ns,-0.004752109,0.007657917,-0.620548562,0.53535263,neg,ns,0.271360059,0.0000309,0.000263355,0.117372358,0.906640995,pos,ns,0.822219892,Jhy,Jhy_Intron,9,40927353,40927402,40927353,40927354,50,-,CGAGAAAATGATCAAATGAAATTGCATTTTGAGCATCATAAGCTGTGTAA,"Intron (Jhy-201/Jhy, intron 3 of 8)",9,40894849,40964118,69270,2,Jhy-201,36716,Gm18586-201;Jhy-201,Gm18586;Jhy,3024;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,70989,ENSMUSG00000032023,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25912,cg15835565,0.0000306,0.0000103,2.977145517,0.003138761,gain,ns,0.0000157,0.0000174,0.902646143,0.36741455,pos,ns,0.005406798,0.005108481,1.058396485,0.290698731,pos,ns,0.536556864,0.0000306,0.00017568,0.173990106,0.861986802,pos,ns,0.886971127,Mid2,Mid2_Exon,X,140678304,140678353,140678352,140678353,50,+,CGCTTCCAGAAGGCTTCAGTCAGTGGGCCCAATTCCCCTAGTGAGAGCCG,"Exon (Mid2-204/Mid2, exon 2 of 2)",20,140664599,140678708,14110,1,Mid2-204,13705,Mid2-204;Mid2-202;Mid2-201;Mid2-203,Mid2;Mid2;Mid2;Mid2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,11,23947,ENSMUSG00000000266,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15870,cg25657187,0.0000365,0.00000379,9.627421191,2.30E-19,gain,yes,-0.00000582,0.00000645,-0.902612435,0.367432418,neg,ns,0.005724419,0.001888356,3.031429308,0.002639289,pos,ns,2.578513016,-0.00000835,0.0000649,-0.128546337,0.897799986,neg,ns,0.099723744,Gm6411,Gm6411_Intron,13,83732385,83732434,83732385,83732386,50,-,CGGCAGAGGGGGCTGGACTAGACCTTGGACAGCCCCCCCAAAAACTTGCC,"Intron (C130071C03Rik-201/C130071C03Rik-201, intron 1 of 3)",13,83761132,83762335,1204,2,Gm6411-201,29950,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,36,623241,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
24958,cg19648512,-0.0000249,0.00000452,-5.521752121,7.11E-08,loss,yes,-0.00000692,0.00000767,-0.902589858,0.367444385,neg,ns,-0.00273967,0.002247651,-1.218903837,0.223807401,neg,ns,0.650125557,-0.0000309,0.0000773,-0.399135543,0.690068151,neg,ns,0.891827304,Fgfr2,Fgfr2_threeUTR,7,130201018,130201067,130201018,130201019,50,-,CGTATTTACTGCCGTTCTTTTCCACGTGCTTGATCCACTGGATGTGGGGC,3' UTR,7,130162451,130266263,103813,2,Fgfr2-211,65196,Fgfr2-211;Fgfr2-217;Fgfr2-207;Fgfr2-226;Fgfr2-215;Fgfr2-201;Fgfr2-202;Fgfr2-203;Fgfr2-204;Fgfr2-205;Fgfr2-206;Fgfr2-208;Fgfr2-209;Fgfr2-210;Fgfr2-212;Fgfr2-213;Fgfr2-214;Fgfr2-216;Fgfr2-222;Fgfr2-225;Fgfr2-218,Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,9,79,14183,ENSMUSG00000030849,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22591,cg09620841,-0.00000367,0.0000016,-2.297848317,0.022236068,loss,ns,0.00000245,0.00000272,0.902573384,0.367453118,pos,ns,0.000838967,0.000795828,1.054207208,0.292609009,pos,ns,0.533712306,-0.0000269,0.0000274,-0.984313027,0.325729225,neg,ns,0.974072294,Wwox,Wwox_Intron,8,115303415,115303464,115303463,115303464,50,+,ACAGCTGCATAATTAAATACTGGAGTGTCAGCGATAATTTATTCCACTCG,"Intron (Wwox-201/Wwox, intron 8 of 8)",8,114439655,115352708,913054,1,Wwox-201,863760,Wwox-201;Wwox-209,Wwox;Wwox,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,32,32,80707,ENSMUSG00000004637,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4893,cg08725967,-0.0000147,0.00000527,-2.790591648,0.005587245,loss,ns,-0.00000808,0.00000896,-0.90209156,0.367708587,neg,ns,-0.004256334,0.002624972,-1.621477807,0.105931817,neg,ns,0.974973577,0.00000823,0.0000903,0.091184182,0.927405135,pos,ns,0.93013002,Zfp513,Zfp513_Exon,5,31199601,31199650,31199649,31199650,50,+,CAAAGGCTACACCGAAAAGGTTTGTCACCAGAGTGGATGCGACCATGACG,"Exon (Zfp513-202/Zfp513, exon 4 of 4)",5,31198981,31202303,3323,2,Zfp513-202,2653,Ppm1g-205;Ppm1g-201;Ppm1g-206;Snx17-201;Snx17-205;Snx17-202;Snx17-204;Snx17-210;Snx17-208;Snx17-207;Snx17-211;Snx17-209;Snx17-206;Snx17-203;Zfp513-202;Zfp513-201;Zfp513-205;Zfp513-207;Zfp513-203;Zfp513-204;Zfp513-208;Zfp513-206,Ppm1g;Ppm1g;Ppm1g;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Zfp513;Zfp513;Zfp513;Zfp513;Zfp513;Zfp513;Zfp513;Zfp513,0;0;5433;0;0;0;0;0;0;0;4758;0;0;0;0;0;0;636;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,15,15,101023,ENSMUSG00000043059,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11851,cg00205229,-0.0000127,0.00000744,-1.709344578,0.088387892,loss,ns,-0.0000114,0.0000126,-0.902073126,0.367718363,neg,ns,-0.002733942,0.003703564,-0.738192147,0.460956151,neg,ns,0.336340386,-0.000117799,0.000127365,-0.924887451,0.355743847,neg,ns,0.876974089,Gm11590,Gm11590_Intergenic_upstream,1,61159045,61159094,61159045,61159046,50,-,CGTGATGTGCTCATCAACAGGAGTGAAAACCTCATTTGTCATCTTTTGGT,Distal Intergenic,1,61121378,61124004,2627,2,Gm11590-201,-35090,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15614,cg00753997,-0.0000188,0.00000556,-3.38507412,0.000803146,loss,ns,-0.00000852,0.00000945,-0.901938428,0.367789803,neg,ns,-0.001265404,0.002767696,-0.457204922,0.647843995,neg,ns,0.188529563,-0.000035,0.0000952,-0.36814222,0.713018441,neg,ns,0.923504978,Nfib,Nfib_threeUTR,4,82295286,82295335,82295286,82295287,50,-,CGTAATGTGGACATTATATCTTCGTGCAAATTAGGATTACTGGAAAGAGT,3' UTR,4,82290173,82505308,215136,2,Nfib-201,209973,Nfib-201;Nfib-203;Nfib-202;Nfib-205;Nfib-206;Nfib-204,Nfib;Nfib;Nfib;Nfib;Nfib;Nfib,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,11,66,18028,ENSMUSG00000008575,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20739,cg03745283,-0.0000536,0.0000088,-6.08831157,3.37E-09,loss,yes,0.0000135,0.0000149,0.901938133,0.367789959,pos,ns,-0.002381079,0.004379621,-0.54367239,0.587057694,neg,ns,0.231319216,0.00000713,0.000150615,0.047308604,0.962297734,pos,ns,0.731318158,Clmn,Clmn_Intron,12,104808815,104808864,104808863,104808864,50,+,CTGGCCTGCCAAGACTCCATAAACTTTATACAGTTTCCATAAATCCAACG,"Intron (Clmn-201/Clmn, intron 1 of 12)",12,104763117,104865076,101960,2,Clmn-201,56212,Clmn-201;Clmn-202;Clmn-205;Clmn-206;Clmn-207;Clmn-204,Clmn;Clmn;Clmn;Clmn;Clmn;Clmn,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,94040,ENSMUSG00000021097,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1500,cg05388544,-0.00000201,0.00000302,-0.66737124,0.505031507,loss,ns,-0.00000463,0.00000513,-0.901876493,0.367822654,neg,ns,0.000771747,0.001502506,0.513639916,0.607869661,pos,ns,0.216189532,-0.0000923,0.0000517,-1.785924274,0.075088861,neg,ns,0.933343194,Gm11819,Gm11819_Intergenic_upstream,4,13286381,13286430,13286429,13286430,50,-,TTTCATATATCAAGTTCGTAGTGGCCATCTGTTCCCTCCGAACTGCTGCG,Distal Intergenic,4,13444770,13445141,372,1,Gm11819-201,-158389,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,19,22,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12047,cg22253511,-0.000000808,0.00000391,-0.206630575,0.83643403,loss,ns,0.00000599,0.00000664,0.901797913,0.367864337,pos,ns,0.006143034,0.001945957,3.156818364,0.001751861,pos,ns,2.756500339,-0.0000924,0.0000669,-1.380525283,0.168419551,neg,ns,0.906441115,Cenpv,Cenpv_Exon,11,62536327,62536376,62536327,62536328,50,+,CGAACTGCTCCACAGTGGCAGCCTCCTGTGTGCTTCACCAGGCCCTGGTA,"Exon (Cenpv-201/Cenpv, exon 2 of 5)",11,62524946,62539261,14316,2,Cenpv-201,2885,Cenpv-201;Cenpv-203;Cenpv-206;Cenpv-202;Cenpv-205,Cenpv;Cenpv;Cenpv;Cenpv;Cenpv,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,73139,ENSMUSG00000018509,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4462,cg23148651,0.00000991,0.0000027,3.664771465,0.000291126,gain,ns,-0.00000414,0.00000459,-0.901595722,0.367971603,neg,ns,-0.001235777,0.001346006,-0.918106526,0.359276856,neg,ns,0.444570758,-0.00000703,0.0000463,-0.151795521,0.879446954,neg,ns,0.053129153,Sox4,Sox4_Promoter,13,28953813,28953862,28953813,28953814,50,+,CGATGCAATAATAATCTCCGCGTGCAATGAGAAGCTCCAAATCTGACCTC,Promoter (<=1kb),13,28948919,28953713,4795,2,Sox4-201,-100,Sox4-201,Sox4,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,12,20677,ENSMUSG00000076431,conserved gene and region,13,28953710,28953834,125,*,125,10,0.56,1.214771623,0.08,0.000000531,CpGisland,TRUE,U2,Pr-W
17557,cg13412130,0.0000617,0.00000499,12.3610721,8.31E-29,gain,yes,-0.00000764,0.00000848,-0.901586687,0.367976396,neg,ns,0.008188813,0.002483919,3.296731334,0.001091766,pos,ns,2.961870609,-0.00000242,0.0000854,-0.028310078,0.977433059,neg,ns,0.113988558,Anks1b,Anks1b_threeUTR,10,90969874,90969923,90969922,90969923,50,+,AGAGGGGCATTAATACCAAGTATGAAACCACGATTTTCTGATACTCGCCG,3' UTR,10,89873509,90970219,1096711,1,Anks1b-233,1096365,Anks1b-233;Anks1b-222;Anks1b-214;Anks1b-208;Anks1b-210;Anks1b-221;Anks1b-219;Anks1b-213;Anks1b-216;Anks1b-224;Anks1b-231;Anks1b-218;Anks1b-217;Anks1b-201;Anks1b-225;Anks1b-205;Anks1b-204;Anks1b-202;Anks1b-228,Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,14,77531,ENSMUSG00000058589,conserved gene and region,10,90969904,90970177,274,*,274,30,0.704379562,0.90309822,0.109489051,2.12E-24,CpGisland,TRUE,U3,Pr-B
9388,cg09798507,0.0000319,0.0000167,1.907143784,0.057426092,gain,ns,0.0000256,0.0000284,0.901579302,0.367980315,pos,ns,0.018062242,0.008327061,2.169101557,0.030834778,pos,ns,1.510959167,-0.000579467,0.000286367,-2.023512448,0.043878051,neg,ns,0.304073759,Tmem260,Tmem260_Exon,14,48538322,48538371,48538322,48538323,50,-,CGGAGATCTCGGGAGACAAGGGCAAAAATCACCCGTCATTTTCTACTGAA,"Exon (4930572G02Rik-205/4930572G02Rik-205, exon 1 of 2)",14,48505986,48507948,1963,1,Tmem260-206,32385,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,11,218989,ENSMUSG00000036339,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2108,cg15247199,0.000196384,0.000029,6.763185009,6.73E-11,gain,yes,-0.0000445,0.0000493,-0.901444468,0.368051858,neg,ns,0.027695557,0.014452098,1.916369231,0.056237465,pos,ns,1.249974264,0.00000865,0.000497006,0.017400376,0.986128403,pos,ns,0.548397008,Skida1,Skida1_Promoter,2,18050622,18050671,18050622,18050623,50,-,CGCGATGTCTAGTTCTTGCCTTTGAAATCTAAGGCTAGCATTTCCATCCA,Promoter (1-2kb),2,18044083,18049051,4969,2,Skida1-202,-1620,Mllt10-201;Skida1-202;Skida1-201;Skida1-203;Skida1-204,Mllt10;Skida1;Skida1;Skida1;Skida1,0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,12,31,72668,ENSMUSG00000054074,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11091,cg02948616,0.000056,0.00000624,8.981836948,2.65E-17,gain,yes,-0.00000955,0.0000106,-0.901432834,0.368058031,neg,ns,0.001562118,0.003104636,0.50315658,0.615211494,pos,ns,0.210975559,0.000227599,0.000106768,2.131708555,0.033816927,pos,ns,0.151844388,Nkx2-1,Nkx2-1_fiveUTR,12,56536695,56536744,56536743,56536744,50,-,GATATTAGTAGATGAGGATCATTCTGCTTCAATTGGGCGCCTCTCATCCG,Promoter (<=1kb),12,56531958,56536908,4951,2,Nkx2-1-201,164,Nkx2-1-202;Nkx2-1-201,Nkx2-1;Nkx2-1,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,6,29,21869,ENSMUSG00000001496,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
20056,cg25943666,0.0000298,0.000012,2.489784144,0.013305857,gain,ns,0.0000183,0.0000203,0.901394801,0.368078214,pos,ns,0.012875788,0.005961193,2.159934954,0.031544018,pos,ns,1.501082993,-0.000120948,0.000205005,-0.589978314,0.55563497,neg,ns,0.701006049,Sp7,Sp7_Promoter,15,102370930,102370979,102370930,102370931,50,+,CGGGTAGAGGCTGCGGCTCTGGTCCTTCCAGTATAAACCCCCTAGGCATC,Promoter (3-4kb),15,102366902,102367182,281,2,Sp7-203,-3748,Sp7-201;Sp7-202;Sp7-203,Sp7;Sp7;Sp7,0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,5,10,170574,ENSMUSG00000060284,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
11167,cg09810328,0.00000266,0.00000411,0.647104255,0.51804334,gain,ns,-0.0000063,0.00000698,-0.901377219,0.368087544,neg,ns,-0.002837884,0.00204603,-1.387019608,0.166432235,neg,ns,0.778762555,0.000205469,0.0000704,2.920130304,0.003755382,pos,ns,0.915538289,Marchf3,Marchf3_Exon,18,56811827,56811876,56811875,56811876,50,-,ACTACCTCTGGGTGGCAAGAGTCCGCACTACTGTTGACAGCAGCTGCCCG,"Exon (Marchf3-202/Marchf3, exon 2 of 5)",18,56761716,56925548,163833,2,Marchf3-202,113672,Marchf3-202;Marchf3-201;Marchf3-203,Marchf3;Marchf3;Marchf3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,7,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6912,cg12456898,-0.0000164,0.00000727,-2.254009742,0.024893689,loss,ns,-0.0000111,0.0000123,-0.901323504,0.368116049,neg,ns,-0.004863981,0.003617235,-1.34466803,0.179715483,neg,ns,0.745414505,-0.000387408,0.000124396,-3.114304481,0.002016001,neg,ns,0.653990953,Fyn,Fyn_Exon,10,39529493,39529542,39529541,39529542,50,-,AGGCTTACCGATCTGTCTGTCAAAACCAAAGATGTCTGGGAAATCCCTCG,"Exon (Fyn-202/Fyn, exon 9 of 14)",10,39369764,39565381,195618,1,Fyn-201,159729,Fyn-201;Fyn-202;Fyn-204;Fyn-205;Fyn-207;Fyn-206;Fyn-203,Fyn;Fyn;Fyn;Fyn;Fyn;Fyn;Fyn,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,6,14360,ENSMUSG00000019843,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21450,cg03129665,0.0000708,0.0000147,4.819523124,0.00000226,gain,ns,-0.0000225,0.0000249,-0.901321206,0.368117269,neg,ns,0.045654932,0.007306591,6.248459022,1.37E-09,pos,ns,8.86407077,-0.001515728,0.000251273,-6.032193791,4.60E-09,neg,yes,0.413978622,Zswim6,Zswim6_Exon,13,107787918,107787967,107787966,107787967,50,-,CTTGCAACGATCAAAGCTGATGGCCACGTTGCAAACAGTTTCTGGCTCCG,"Exon (Zswim6-204/Zswim6, exon 2 of 13)",13,107724617,107890064,165448,2,Zswim6-204,102097,Zswim6-204;Zswim6-201,Zswim6;Zswim6,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,14,26,67263,ENSMUSG00000032846,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4159,cg26397331,-0.000000196,0.00000344,-0.056986228,0.954592878,loss,ns,-0.00000527,0.00000585,-0.901232136,0.36816454,neg,ns,-0.002239046,0.001714418,-1.306009237,0.192517675,neg,ns,0.715529392,0.0000631,0.000059,1.069628753,0.285618582,pos,ns,0.498692509,Hesx1,Hesx1_Intergenic_downstream,14,27006044,27006093,27006092,27006093,50,-,GAACAGTAGTAACAAATCAAGCTAATGCAGTCAGGCTAATACCTGGAGCG,Distal Intergenic,14,27000362,27002329,1968,1,Hesx1-201,5731,Hesx1-202;Hesx1-201,Hesx1;Hesx1,11628;5682,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,15209,ENSMUSG00000040726,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27125,cg04411170,-0.00000455,0.00000386,-1.178150245,0.239640311,loss,ns,0.00000591,0.00000656,0.90117638,0.368194133,pos,ns,0.004717296,0.001922215,2.454094159,0.014673729,pos,ns,1.833459516,0.0000198,0.0000661,0.299307893,0.764905698,pos,ns,0.96519873,Fam83d,Fam83d_Exon,2,158785197,158785246,158785245,158785246,50,-,TTGGTAATTCTGTCTGGCCAAGTGGTTGAACACTTTGATCTGGAGTTCCG,"Exon (Fam83d-201/Fam83d, exon 4 of 4)",2,158768093,158786637,18545,1,Fam83d-201,17104,Fam83d-201;Fam83d-202,Fam83d;Fam83d,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,71878,ENSMUSG00000027654,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19730,cg10861505,0.0000597,0.00000974,6.130705878,2.66E-09,gain,yes,0.0000149,0.0000166,0.901066224,0.368252603,pos,ns,0.005652937,0.004848807,1.165840754,0.244575027,pos,ns,0.611587891,0.0000441,0.00016675,0.264199914,0.791801431,pos,ns,0.805544316,Cavin1,Cavin1_Exon,11,100959058,100959107,100959106,100959107,50,-,GCACCTTGGTCTTCTCCATCTTCTCCTTGGAGAAGGCCTTCTTGAAGTCG,"Exon (Cavin1-201/Cavin1, exon 2 of 2)",11,100956733,100970887,14155,2,Cavin1-201,11780,Cavin1-201,Cavin1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,19285,ENSMUSG00000004044,conserved gene and region,11,100959106,100959309,204,*,204,28,0.691176471,1.224699829,0.137254902,7.07E-26,CpGisland,TRUE,NA,NRS
25401,cg20444682,-0.00000639,0.0000029,-2.201751498,0.028419222,loss,ns,-0.00000444,0.00000493,-0.900982506,0.368297044,neg,ns,0.000157065,0.0014435,0.108808326,0.913424915,pos,ns,0.039327146,-0.0000705,0.0000496,-1.419180708,0.156851025,neg,ns,0.962095487,Gm9341,Gm9341_Intergenic_downstream,7,136229600,136229649,136229648,136229649,50,+,GTTACGTCAGTTCTACCATTAAAAGACTTGCTTCTCTGCAAATTTTTGCG,Distal Intergenic,7,135952798,135953783,986,1,Gm9341-201,276802,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,27,28,668764,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9836,cg16517052,-0.00000598,0.00000232,-2.581275264,0.010302776,loss,ns,-0.00000355,0.00000394,-0.900962338,0.36830775,neg,ns,-0.000800171,0.001153785,-0.693518469,0.488503538,neg,ns,0.311132287,0.00000938,0.0000397,0.236425412,0.813258719,pos,ns,0.951427621,Gm44402,Gm44402_Intergenic_downstream,6,51044187,51044236,51044187,51044188,50,-,CGGTGATTGAAATAAATTACTTTGTTAAATTGCGAAGCAGGTTGACCCAT,Distal Intergenic,6,50967268,50967505,238,1,Gm44402-201,76968,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,9,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10838,cg13220278,0.00000222,0.000026,0.085357329,0.932032416,gain,ns,-0.0000398,0.0000441,-0.900885042,0.368348785,neg,ns,-0.043637473,0.012930745,-3.374706681,0.000832892,neg,ns,3.07941155,0.001627803,0.000444687,3.660556885,0.000295754,pos,ns,0.666812466,Neurod6,Neurod6_Intergenic_downstream,6,55580210,55580259,55580258,55580259,50,+,ATTTCCCTCTATCTCTGCAGGGCAATCTTTAAAGGCAGTAAGGTGTGACG,Distal Intergenic,6,55677822,55681263,3442,2,Neurod6-201,101004,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,16,11922,ENSMUSG00000037984,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
871,cg15708373,-0.00000107,0.00000139,-0.771947416,0.44073364,loss,ns,0.00000213,0.00000237,0.900845793,0.368369623,pos,ns,0.001465273,0.000692889,2.114729198,0.035250867,pos,ns,1.452830195,-0.0000302,0.0000238,-1.267274868,0.206008181,neg,ns,0.043151704,Zbtb10,Zbtb10_Promoter,3,9249929,9249978,9249977,9249978,50,+,CTGGTGATGTAACACCCATGTCAATACTTCCCAGTGAACGCACGTGTTCG,Promoter (<=1kb),3,9250602,9285333,34732,1,Zbtb10-201,-624,Zbtb10-201,Zbtb10,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,4,9,229055,ENSMUSG00000069114,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
784,cg16931675,0.0000217,0.0000135,1.609154484,0.108600412,gain,ns,0.0000206,0.0000229,0.900774666,0.368407387,pos,ns,0.014713561,0.006698819,2.19644122,0.028800573,pos,ns,1.540598872,-0.000111248,0.000230372,-0.482908078,0.629501856,neg,ns,0.168625147,Gm38007,Gm38007_Intergenic_downstream,3,8717573,8717622,8717621,8717622,50,-,GGTGCTGTTTCCCACAGCTCTGATCTAATTCAGCTGAAATTCAATCTCCG,Distal Intergenic,3,8673410,8673722,313,1,Gm38007-201,44212,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,,NA,mapped to different genes,3,8717621,8717790,170,*,170,11,0.664705882,0.633468835,0.064705882,0.000000972,CpGisland,TRUE,NA,NRS
20233,cg18211931,0.0000265,0.00000461,5.745514875,2.19E-08,gain,yes,-0.00000706,0.00000784,-0.900730173,0.368431012,neg,ns,0.003908817,0.002296041,1.702415593,0.08967993,pos,ns,1.047304741,-0.0000367,0.000079,-0.464483572,0.642627368,neg,ns,0.093374572,Hoxc11,Hoxc11_Intergenic_downstream,15,102960009,102960058,102960009,102960010,50,+,CGAGTTCAAAGTTTCCCGGAGCTAAGGAGGAATGCTGGTTGTAAAAATCC,Distal Intergenic,15,102954427,102957708,3282,1,Hoxc11-201,5582,Hoxc11-201,Hoxc11,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,24,109663,ENSMUSG00000001656,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
4918,cg00299517,0.0000109,0.00000449,2.425345827,0.015864657,gain,ns,-0.00000687,0.00000763,-0.900723143,0.368434744,neg,ns,-0.005725524,0.002235424,-2.561269779,0.010902062,neg,ns,1.962491337,0.000168341,0.0000769,2.189768396,0.029286044,pos,ns,0.81233485,Dnah1,Dnah1_Exon,14,31290440,31290489,31290488,31290489,50,-,CAAACTCCCCGTACAGCTGGCCCATCGTGATGGACTTGGGGTTGAGCACG,"Exon (Dnah1-201/Dnah1, exon 36 of 78)",14,31260375,31323896,63522,2,Dnah1-201,33407,Dnah1-201,Dnah1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,110084,ENSMUSG00000019027,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24118,cg09758931,0.0000155,0.00000438,3.546523913,0.000450644,gain,ns,-0.0000067,0.00000744,-0.900638991,0.368479429,neg,ns,0.001235871,0.002178564,0.567286994,0.570929774,pos,ns,0.243417308,-0.0000769,0.0000749,-1.026354223,0.305524831,neg,ns,0.91189178,Pcca,Pcca_Intron,14,122687550,122687599,122687550,122687551,50,-,CGTTGACAGCTGTAATTATGTATCTCCATGGTGATCACTTTTGGCCTGTC,"Intron (Pcca-201/Pcca, intron 14 of 23)",14,122534339,122889944,355606,1,Pcca-201,153211,Pcca-201;Pcca-213,Pcca;Pcca,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,7,110821,ENSMUSG00000041650,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26110,cg24036955,-0.0000113,0.00000476,-2.366832092,0.018555312,loss,ns,0.00000728,0.00000808,0.900551365,0.368525963,pos,ns,-0.000815391,0.002367526,-0.34440648,0.730774134,neg,ns,0.136216833,0.0000942,0.0000814,1.156726102,0.248274865,pos,ns,0.915264064,Gm2505,Gm2505_Intron,3,143947492,143947541,143947540,143947541,50,-,AGGCAGCTTTCATTGAAGTTGATTACAGCAGCCATATAATCACTTTTACG,"Intron (Gm42707-202/Gm42707-202, intron 1 of 1)",3,143872995,143873819,825,1,Gm2505-201,74546,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,37,100039938,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23865,cg08284222,-0.0000055,0.00000188,-2.924668761,0.003702518,loss,ns,0.00000288,0.0000032,0.900539407,0.368532313,pos,ns,0.002598569,0.000936633,2.774371436,0.005866354,pos,ns,2.231631762,-0.0000855,0.0000322,-2.653542118,0.008375791,neg,ns,0.063123603,Mosmo,Mosmo_Exon,7,120677776,120677825,120677824,120677825,50,+,GACCATCATCTCAGGATGTCTCTTTCTGGCCGCCGATATCTTCGCCATCG,Promoter (<=1kb),7,120677618,120730638,53021,1,Mosmo-202,158,Mosmo-202;Mosmo-205;Mosmo-201;Mosmo-207,Mosmo;Mosmo;Mosmo;Mosmo,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,6,233812,ENSMUSG00000046096,conserved gene and region,7,120677806,120677975,170,*,170,25,0.741176471,1.111111111,0.147058824,5.22E-24,CpGisland,TRUE,NA,NRS
26910,cg19866637,-0.0000297,0.00000619,-4.798710294,0.00000249,loss,ns,0.00000946,0.0000105,0.900365183,0.368624846,pos,ns,-0.000411009,0.003079137,-0.133481741,0.893899012,neg,ns,0.048711543,-0.0000763,0.000105891,-0.720222942,0.471930432,neg,ns,0.887940993,Prdm16,Prdm16_Intron,4,154569005,154569054,154569053,154569054,50,-,CCTCCTCCCCATTAGGTTTGCAAATTGCAGGCACCAGTCATAAATTACCG,"Intron (Prdm16-201/Prdm16, intron 1 of 16)",4,154316125,154636866,320742,2,Prdm16-201,67812,Prdm16-201;Prdm16-202;Prdm16-203;Prdm16-204;Prdm16-205;Prdm16-206;Prdm16-210;Prdm16-207;Prdm16-212,Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,32,70673,ENSMUSG00000039410,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5002,cg18647021,-0.000019,0.00000568,-3.338839928,0.000943905,loss,ns,0.00000868,0.00000964,0.900305401,0.3686566,pos,ns,-0.00181257,0.0028256,-0.641481346,0.521683995,neg,ns,0.282592487,0.00000584,0.0000972,0.060057592,0.952148464,pos,ns,0.821838606,Ammecr1l,Ammecr1l_Exon,18,31774264,31774313,31774264,31774265,50,-,CGGGACAAGCGGCTTCGTGGCTGCATTGGGACCTTCTCAGCCATGAATCT,"Exon (Ammecr1l-205/Ammecr1l, exon 4 of 6)",18,31759826,31777524,17699,1,Ammecr1l-205,14438,Ammecr1l-205;Ammecr1l-201;Ammecr1l-204;Ammecr1l-203;Ammecr1l-202,Ammecr1l;Ammecr1l;Ammecr1l;Ammecr1l;Ammecr1l,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,4,225339,ENSMUSG00000041915,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19483,cg23189046,-0.00000137,0.00000217,-0.6327609,0.527356254,loss,ns,0.00000332,0.00000369,0.900132147,0.368748637,pos,ns,0.000976453,0.001080844,0.903416611,0.367006296,pos,ns,0.435326485,-0.0000316,0.0000372,-0.851403508,0.395202443,neg,ns,0.949393692,Foxp1,Foxp1_Intron,6,99404793,99404842,99404841,99404842,50,+,TAACCACAAATCAAGGTGCTAGTAGGAATTAAAGCTTCTCTTAAAAGGCG,"Intron (Foxp1-204/Foxp1, intron 1 of 18)",6,98925342,99435345,510004,2,Foxp1-204,30503,Foxp1-204;Foxp1-220;Foxp1-221;Foxp1-222;Foxp1-224;Foxp1-227;Foxp1-219;Gm20696-201,Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Gm20696,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,87,108655,ENSMUSG00000030067,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9630,cg22000069,0.0000415,0.00000471,8.810180646,9.08E-17,gain,yes,0.0000072,0.000008,0.899879741,0.368882747,pos,ns,0.006774587,0.002344675,2.889350452,0.00413248,pos,ns,2.383789226,-0.000101587,0.0000806,-1.259865611,0.208665477,neg,ns,0.094553399,Kif5c,Kif5c_fiveUTR,2,49619659,49619708,49619707,49619708,50,+,GAGATGGCGGATCCAGCCGAATGCAGCATCAAAGTGATGTGCCGGTTCCG,Promoter (<=1kb),2,49619298,49774778,155481,1,Kif5c-201,361,Kif5c-201,Kif5c,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,2,16574,ENSMUSG00000026764,conserved gene but different region,2,49619202,49620027,826,*,826,80,0.694915254,0.80995281,0.0968523,1.42E-59,CpGisland,TRUE,U3,Pr-B
27885,cg09643584,0.000073,0.0000157,4.641103894,0.00000512,gain,ns,-0.000024,0.0000267,-0.899842057,0.368902772,neg,ns,0.023642762,0.007829895,3.019550418,0.002741895,pos,ns,2.561949229,-0.000549653,0.000269269,-2.041274573,0.042070053,neg,ns,0.371559323,Prox1,Prox1_Intron,1,190128034,190128083,190128082,190128083,50,+,TCATAAGTGTCAGGACATACCAAGGTTAGCGGTCACTGGAAGTGTGCTCG,"Intron (Prox1-202/Prox1, intron 4 of 4)",1,190118035,190170714,52680,2,Prox1-202,42631,Prox1-202;Prox1-201;Prox1-203,Prox1;Prox1;Prox1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,59,19130,ENSMUSG00000010175,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6516,cg17734433,-0.0000845,0.0000134,-6.315370694,9.34E-10,loss,yes,-0.0000205,0.0000227,-0.899610409,0.369025883,neg,ns,-0.023503418,0.0066603,-3.528882777,0.000480521,neg,ns,3.318287968,0.00036276,0.000229047,1.583777102,0.11426405,pos,ns,0.565519,Siae,Siae_Intron,9,37572672,37572721,37572720,37572721,50,+,ATGCAAATGGTCAGGTTCTCCTAGCAACAGGAGCCAACCCACGCAGGGCG,"Intron (Siae-202/Siae, intron 2 of 10)",9,37555698,37646987,91290,1,Siae-202,16974,Siae-202,Siae,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,5,22619,ENSMUSG00000001942,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10720,cg25871874,0.0000257,0.00000426,6.035197146,4.53E-09,gain,yes,-0.00000651,0.00000724,-0.899466294,0.369102488,neg,ns,-0.004506804,0.00212066,-2.125189708,0.034361418,neg,ns,1.463928925,0.000124067,0.0000729,1.701190375,0.089909977,pos,ns,0.865344367,Zfp462,Zfp462_fiveUTR,4,55011336,55011385,55011384,55011385,50,+,GACCTCAGTACTGAGCTTTACTACTGCAAACACTGTTCCTACAGCAATCG,Promoter (<=1kb),4,55011366,55081358,69993,1,Zfp462-201,0,Zfp462-204;Zfp462-203;Zfp462-201;Zfp462-202,Zfp462;Zfp462;Zfp462;Zfp462,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,23,242466,ENSMUSG00000060206,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19951,cg27290535,0.0000702,0.0000142,4.927788716,0.00000136,gain,yes,0.0000218,0.0000242,0.899461681,0.36910494,pos,ns,0.027683794,0.007086352,3.906635493,0.00011493,pos,ns,3.939565423,-0.0000514,0.000243699,-0.210910391,0.833095768,neg,ns,0.902973097,Clpb,Clpb_Intron,7,101742072,101742121,101742120,101742121,50,-,CTGAATCAAGCCTTCTAGCCTCCCCGTGTGACGAGTGCAATAAGGTAACG,"Intron (Clpb-201/Clpb, intron 5 of 15)",7,101663633,101790168,126536,1,Clpb-201,78439,Clpb-201;Clpb-202;Clpb-211;Clpb-208;Clpb-207;Clpb-210,Clpb;Clpb;Clpb;Clpb;Clpb;Clpb,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,21,21,20480,ENSMUSG00000001829,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5258,cg11006692,0.000053,0.00000698,7.587560226,3.84E-13,gain,yes,-0.0000107,0.0000119,-0.899265303,0.369209341,neg,ns,0.000822771,0.003475532,0.236732307,0.813020822,pos,ns,0.089898332,0.000134828,0.000119523,1.12804587,0.260172829,pos,ns,0.04534433,Tlx3,Tlx3_Exon,11,33202452,33202501,33202500,33202501,50,-,GAACCAGGTCTTGACCTGCGCGTCCGTCATTTTGAGGGACTTGGCGAGCG,"Exon (Tlx3-201/Tlx3, exon 2 of 3)",11,33200752,33203589,2838,2,Tlx3-201,1088,Tlx3-201,Tlx3,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,20,27140,ENSMUSG00000040610,conserved gene and region,11,33202138,33202672,535,*,535,46,0.639252336,0.904247502,0.085981308,4.93E-32,CpGisland,TRUE,U13,Hc-P
17937,cg09401976,0.00000322,0.00000159,2.025630776,0.043659022,gain,ns,-0.00000243,0.0000027,-0.899078881,0.369308466,neg,ns,0.000268671,0.000790571,0.339844749,0.734203588,pos,ns,0.134183498,-0.0000157,0.0000272,-0.577872507,0.563769704,neg,ns,0.031906691,Pcf11,Pcf11_Exon,7,92669440,92669489,92669488,92669489,50,+,GGGCCTCGATGAGAGAGACGATCTCCTTGGCGAAGGGCAGGTTCTCCTCG,Promoter (<=1kb),7,92643543,92669934,26392,2,Pcf11-201,445,Pcf11-201;Pcf11-205;Pcf11-204,Pcf11;Pcf11;Pcf11,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,8,74737,ENSMUSG00000041328,conserved gene and region,7,92669413,92670159,747,*,747,79,0.654618474,0.987863671,0.105756359,4.14E-62,CpGisland,TRUE,U1,Pr-A
21194,cg06130231,-0.0000252,0.0000112,-2.259236312,0.024562966,loss,ns,0.0000171,0.000019,0.898785039,0.369464743,pos,ns,-0.007097401,0.005561717,-1.276116859,0.202869473,neg,ns,0.6927833,0.000205212,0.000191267,1.072906765,0.284147432,pos,ns,0.154040817,Zfp644,Zfp644_Promoter,5,106696878,106696927,106696878,106696879,50,+,CGCCCCAAAGTAGGCACGCTCCAAATATGGTGGTGCCCAAACTCTGCAAG,Promoter (<=1kb),5,106695055,106697287,2233,2,Zfp644-211,360,Zfp644-204;Zfp644-201;Zfp644-205;Zfp644-203;Zfp644-208;Zfp644-209;Zfp644-213;Zfp644-216;Zfp644-207;Zfp644-212;Zfp644-218;Zfp644-214;Zfp644-210;Zfp644-215;Zfp644-211;Zfp644-217,Zfp644;Zfp644;Zfp644;Zfp644;Zfp644;Zfp644;Zfp644;Zfp644;Zfp644;Zfp644;Zfp644;Zfp644;Zfp644;Zfp644;Zfp644;Zfp644,0;0;0;0;0;0;0;0;0;0;-1855;-712;0;0;0;-866,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,1,10,52397,ENSMUSG00000049606,conserved gene and region,5,106695921,106696912,992,*,992,127,0.724798387,1.009341601,0.128024194,2.26E-111,CpGisland,TRUE,U1,Pr-A
19824,cg13531810,0.00000356,0.00000483,0.737404377,0.46143424,gain,ns,-0.00000738,0.00000821,-0.898712446,0.369503357,neg,ns,-0.000106508,0.002404335,-0.044298191,0.964695234,neg,ns,0.015609867,-0.0000474,0.0000827,-0.572680775,0.567275971,neg,ns,0.909836399,Atg16l2,Atg16l2_Exon,7,101276972,101277021,101276972,101276973,50,-,CGTTTCAGGCAGCCTCAACGGAGATGCCAGTGGTAAAGACTGAAACAAGG,"Exon (Fchsd2-201/Fchsd2, exon 17 of 21)",7,101263034,101290612,27579,2,Atg16l2-216,13591,Atg16l2-216;Fchsd2-201;Fchsd2-202,Atg16l2;Fchsd2;Fchsd2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,73683,ENSMUSG00000047767,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22014,cg18092286,0.00000465,0.00000189,2.465179595,0.014236095,gain,ns,-0.00000288,0.0000032,-0.898676509,0.369522474,neg,ns,-0.000637219,0.000938391,-0.679054434,0.497610033,neg,ns,0.303110872,0.0000187,0.0000323,0.579211945,0.562866812,pos,ns,0.957766977,Wee1,Wee1_Exon,7,110142014,110142063,110142062,110142063,50,-,ACTGACCGGATGGCCACTAGGTCCACCACCCAGAGTAATAGAACATCTCG,"Exon (Wee1-201/Wee1, exon 11 of 11)",7,110122046,110143286,21241,1,Wee1-201,19968,Wee1-201,Wee1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,22390,ENSMUSG00000031016,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26656,cg26929690,-0.00000213,0.00000515,-0.41425856,0.678971247,loss,ns,0.00000786,0.00000874,0.898616239,0.369554536,pos,ns,-0.006404229,0.002561768,-2.499924887,0.012938445,neg,ns,1.888117904,0.000123881,0.0000881,1.406153096,0.160680226,pos,ns,0.902780402,Bicd1,Bicd1_Exon,6,149519069,149519118,149519069,149519070,50,+,CGCAGCAAAGGCAAACTTGGAAAGAGCAAGATCGGCAGCCCTAAAGTAAG,"Exon (Bicd1-202/Bicd1, exon 7 of 9)",6,149408984,149563329,154346,1,Bicd1-202,110085,Bicd1-202;Bicd1-203;Bicd1-201;Bicd1-207;Bicd1-208;Bicd1-206,Bicd1;Bicd1;Bicd1;Bicd1;Bicd1;Bicd1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,6,12121,ENSMUSG00000003452,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25396,cg19901952,0.00000299,0.0000049,0.610055209,0.542272164,gain,ns,0.00000748,0.00000832,0.898552272,0.369588567,pos,ns,-0.002685948,0.002437266,-1.102033077,0.27130215,neg,ns,0.566546765,-0.0000271,0.0000838,-0.32360835,0.746452768,neg,ns,0.87079078,Gm9341,Gm9341_Intergenic_downstream,7,136209196,136209245,136209196,136209197,50,-,CGGGCATATTGTATTTCTTTTGACAGATTAATTAGAAATTCAGCCGTGGC,Distal Intergenic,7,135952798,135953783,986,1,Gm9341-201,256447,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,27,28,668764,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3173,cg06549221,-0.0000202,0.00000728,-2.779221183,0.005781606,loss,ns,0.0000111,0.0000124,0.89854571,0.369592058,pos,ns,0.010779211,0.003621579,2.97638461,0.00314634,pos,ns,2.502194359,-0.000338275,0.000124546,-2.716066153,0.006976994,neg,ns,0.800796173,Eif4a2,Eif4a2_threeUTR,16,23112412,23112461,23112460,23112461,50,-,ACGTGGAATCATAAGCGAAACAGCACACTGTTTGAATAAAGAGCGAGTCG,3' UTR,16,23107444,23113947,6504,1,Eif4a2-201,4968,Eif4a2-201;Eif4a2-222;Eif4a2-216;Eif4a2-210;Eif4a2-223;Eif4a2-213;Eif4a2-208;Eif4a2-224;Eif4a2-202;Eif4a2-212;Eif4a2-206;Eif4a2-220;Eif4a2-218;Eif4a2-203;Eif4a2-209;Eif4a2-207;Eif4a2-214;Eif4a2-211;Eif4a2-204;Eif4a2-217;Eif4a2-221;Eif4a2-205;Eif4a2-219;Eif4a2-215;Rfc4-201;Rfc4-203;Rfc4-205;Rfc4-204,Eif4a2;Eif4a2;Eif4a2;Eif4a2;Eif4a2;Eif4a2;Eif4a2;Eif4a2;Eif4a2;Eif4a2;Eif4a2;Eif4a2;Eif4a2;Eif4a2;Eif4a2;Eif4a2;Eif4a2;Eif4a2;Eif4a2;Eif4a2;Eif4a2;Eif4a2;Eif4a2;Eif4a2;Rfc4;Rfc4;Rfc4;Rfc4,0;0;0;4654;0;4653;4653;4653;0;4645;4641;4639;4635;0;0;4633;4495;3830;3181;2436;2367;2179;1740;1713;15276;15256;2283;15230,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,TRUE,FALSE,threeUTR,3,3,13682,ENSMUSG00000022884,conserved gene but different region,16,23112355,23112461,107,*,107,10,0.476635514,1.759868421,0.093457944,0.000000121,CpGisland,TRUE,U10,Tr-S
2792,cg06283343,0.0000189,0.0000131,1.436478301,0.15187469,gain,ns,-0.0000201,0.0000223,-0.898455008,0.369640316,neg,ns,0.002476021,0.006543083,0.378418111,0.705379028,pos,ns,0.151577457,-0.000349061,0.000225016,-1.551272156,0.121856753,neg,ns,0.370366708,Klhl14,Klhl14_Intergenic_upstream,18,21729210,21729259,21729258,21729259,50,+,AATGTGACTGCATGTTCGAGATCACTGCCTCCCATCTGCAATTTGTGACG,Distal Intergenic,18,21550379,21654718,104340,2,Klhl14-202,-74492,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,38,225266,ENSMUSG00000042514,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9427,cg17162190,0.000209181,0.0000223,9.374413135,1.51E-18,gain,yes,0.0000341,0.0000379,0.898287924,0.369729222,pos,ns,0.067074949,0.011105944,6.039553968,4.42E-09,pos,ns,8.354697198,-0.00125915,0.000381932,-3.296786822,0.001091557,neg,ns,0.484040785,Zbtb16,Zbtb16_Intron,9,48720707,48720756,48720707,48720708,50,-,CGATAATAGAGGCCTCATCTGTTAATCAATAAGACAGTCTCTGCCTGTTT,"Intron (Zbtb16-201/Zbtb16, intron 3 of 6)",9,48654297,48835945,181649,2,Zbtb16-201,115189,Zbtb16-201;Zbtb16-202,Zbtb16;Zbtb16,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,37,235320,ENSMUSG00000066687,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12905,cg06075167,0.00000192,0.0000215,0.089269735,0.928925191,gain,ns,-0.0000328,0.0000366,-0.898225341,0.369762527,neg,ns,0.003327624,0.010711003,0.310673384,0.756257714,pos,ns,0.121330182,-0.000162563,0.000368351,-0.441327883,0.659283298,neg,ns,0.86935032,Igf1r,Igf1r_Exon,7,68193545,68193594,68193593,68193594,50,+,CATCGATATCCACAGCTGCAACCACGAGGCTGAGAAGCTGGGCTGCAGCG,"Exon (Igf1r-201/Igf1r, exon 11 of 21)",7,67952827,68233668,280842,1,Igf1r-201,240718,Igf1r-201;Igf1r-204,Igf1r;Igf1r,0;-1072,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,9,16001,ENSMUSG00000005533,conserved gene and region,7,68193525,68193736,212,*,212,15,0.594339623,0.803030303,0.070754717,1.49E-09,CpGisland,TRUE,U10,Tr-S
27311,cg26472407,-0.00000359,0.00000285,-1.258482224,0.209164376,loss,ns,0.00000435,0.00000484,0.898216863,0.369767039,pos,ns,0.000689401,0.001419121,0.485794075,0.62745636,pos,ns,0.202416475,0.0000391,0.0000488,0.800189174,0.424213974,pos,ns,0.947753309,Scyl3,Scyl3_Exon,1,163934647,163934696,163934647,163934648,50,-,CGTCACCCTTGCTTGCTAAGATTTTTATCTTGTACTGTGGAAGCGGATGG,"Exon (Scyl3-203/Scyl3, exon 3 of 14)",1,163929100,163954702,25603,1,Scyl3-203,5547,Scyl3-203;Scyl3-201;Scyl3-207;Scyl3-204,Scyl3;Scyl3;Scyl3;Scyl3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,240880,ENSMUSG00000026584,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19402,cg00913314,-0.0000593,0.0000103,-5.758209515,2.05E-08,loss,yes,0.0000157,0.0000175,0.898039374,0.369861503,pos,ns,-0.010038376,0.005124764,-1.958797692,0.051032738,neg,ns,1.292151134,0.0000859,0.00017624,0.487201806,0.626459649,pos,ns,0.336338213,Zfp366,Zfp366_Intron,13,99238888,99238937,99238936,99238937,50,-,ATTTCATCTTGCTTTCTCTTGTACTTTTCAAAGCTTCCTGTTTTCTCACG,"Intron (Zfp366-201/Zfp366, intron 3 of 4)",13,99184823,99250656,65834,1,Zfp366-201,54065,Zfp366-201,Zfp366,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,2,238803,ENSMUSG00000050919,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
13207,cg07060006,0.00000675,0.00000164,4.116598287,0.0000493,gain,ns,0.0000025,0.00000279,0.897919302,0.369925416,pos,ns,0.001733581,0.000816512,2.123153788,0.034533005,pos,ns,1.461765634,-0.0000222,0.0000281,-0.789334522,0.430519804,neg,ns,0.01115712,Foxb1,Foxb1_fiveUTR,9,69760914,69760963,69760914,69760915,50,-,CGGCGCTTCATTAATGTGCCACTTCTTAGCTATCATATGACAATCGCCTT,Promoter (<=1kb),9,69757710,69760940,3231,2,Foxb1-201,0,Foxb1-201,Foxb1,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,21,64290,ENSMUSG00000059246,conserved gene but different region,9,69760569,69760991,423,*,423,38,0.643026005,0.879754803,0.089834515,2.59E-27,CpGisland,TRUE,U13,Hc-P
2313,cg18139816,0.00000319,0.0000094,0.33933121,0.734589996,gain,ns,0.0000143,0.000016,0.897756139,0.370012278,pos,ns,-0.010133147,0.004679291,-2.165530536,0.031109423,neg,ns,1.507108041,0.000296348,0.00016092,1.841581966,0.066491516,pos,ns,0.706095189,Meis1,Meis1_Exon,11,19011274,19011323,19011322,19011323,50,-,CTTCACTGTCTGATTTTGATCCTCCTTCTCTATCGTCTATCACCAAATCG,"Exon (Meis1-206/Meis1, exon 6 of 10)",11,18879817,19018985,139169,2,Meis1-206,7662,Meis1-206;Meis1-202;Meis1-209;Meis1-201;Meis1-203;Meis1-208;Meis1-207;Meis1-204;Meis1-205,Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,21,88,17268,ENSMUSG00000020160,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18828,cg26693978,-0.0000287,0.00000908,-3.1574295,0.001748309,loss,ns,0.0000139,0.0000154,0.897542162,0.370126211,pos,ns,0.009024719,0.004520988,1.996182774,0.046788471,pos,ns,1.329861145,-0.000528071,0.000155476,-3.396470806,0.000771592,neg,ns,0.744995329,E130114P18Rik,E130114P18Rik_Intron,4,97583090,97583139,97583138,97583139,50,-,AAAGTTTGCTGCCAGGACAATGAATGTATTATCCGTTCCTAACTGGACCG,"Intron (E130114P18Rik-207/E130114P18Rik, intron 1 of 4)",4,97568133,97584596,16464,2,E130114P18Rik-207,1457,E130114P18Rik-207;E130114P18Rik-201;E130114P18Rik-203;E130114P18Rik-202;E130114P18Rik-206;E130114P18Rik-204;E130114P18Rik-209;E130114P18Rik-208,E130114P18Rik;E130114P18Rik;E130114P18Rik;E130114P18Rik;E130114P18Rik;E130114P18Rik;E130114P18Rik;E130114P18Rik,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,24,319865,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9875,cg06600911,-0.00000879,0.00000153,-5.728302122,0.000000024,loss,yes,0.00000234,0.00000261,0.897404852,0.370199334,pos,ns,-0.000408644,0.000763478,-0.535240499,0.592867306,neg,ns,0.227042499,0.0000113,0.0000263,0.429406328,0.667925838,pos,ns,0.975385518,Colca2,Colca2_Exon,9,51279794,51279843,51279842,51279843,50,+,CAAGTATTTAAAACCTCTAGAAACCCATGATTTGACAATCAATGATTGCG,Promoter (<=1kb),9,51270258,51279651,9394,2,Colca2-203,-143,Colca2-201;Colca2-202;Colca2-203,Colca2;Colca2;Colca2,-1240;-1240;-143,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,100502940,ENSMUSG00000079559,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1254,cg26782661,0.0000331,0.00000767,4.311898932,0.0000218,gain,ns,-0.0000117,0.000013,-0.897334928,0.370236574,neg,ns,0.005744505,0.003819509,1.503990411,0.133601923,pos,ns,0.874187292,-0.000177096,0.000131353,-1.348245186,0.178563802,neg,ns,0.137216825,Bcor,Bcor_Intron,X,12136088,12136137,12136136,12136137,50,+,CCTCTCTTTAAATAGATTTCAGGGCGCTGCCTGTTGGAGAGCAGCTGGCG,"Intron (Bcor-201/Bcor, intron 1 of 13)",20,12036743,12160355,123613,2,Bcor-201,24218,Bcor-201;Bcor-208,Bcor;Bcor,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,56,74,71458,ENSMUSG00000040363,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3734,cg25133344,0.0000012,0.000000452,2.652801493,0.008393773,gain,ns,0.000000688,0.000000767,0.897256298,0.370278455,pos,ns,0.000476218,0.000224775,2.118645966,0.034915541,pos,ns,1.45698122,-0.00000312,0.00000773,-0.40303697,0.687198845,neg,ns,0.012743689,Pou2f2,Pou2f2_Promoter,7,25179908,25179957,25179908,25179909,50,+,CGCGCGCCATCCCCGGCTCCCACCTTGTCCCCATGGCAACCCCGGGCCCA,Promoter (<=1kb),7,25120618,25179726,59109,2,Pou2f2-208,-182,Pou2f2-208,Pou2f2,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,11,29,18987,ENSMUSG00000008496,conserved gene but different region,7,25179573,25180057,485,*,485,61,0.771134021,0.853947179,0.125773196,3.02E-53,CpGisland,TRUE,U3,Pr-B
7635,cg16604910,0.00000916,0.00000486,1.885661029,0.060275509,gain,ns,0.0000074,0.00000825,0.897219794,0.370297898,pos,ns,-0.000708271,0.002416748,-0.2930679,0.769666332,neg,ns,0.113697511,-0.0000959,0.0000831,-1.153564337,0.24956744,neg,ns,0.890561345,Tpm2,Tpm2_Exon,4,43518650,43518699,43518650,43518651,50,+,CGCCTGGGCCTCCAGGGATTTCAAGTTGTTGGTAACAATTTTCAGCTCCT,"Exon (Tpm2-205/Tpm2, exon 6 of 8)",4,43514711,43523438,8728,2,Tpm2-205,4739,Car9-201;Car9-202;Tpm2-205;Tpm2-201;Tpm2-203;Tpm2-202;Tpm2-204;Tpm2-206,Car9;Car9;Tpm2;Tpm2;Tpm2;Tpm2;Tpm2;Tpm2,11684;11626;0;0;0;0;0;5066,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,22004,ENSMUSG00000028464,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2909,cg15405662,-0.000000862,0.000000799,-1.078581642,0.281612789,loss,ns,0.00000122,0.00000136,0.897179711,0.370319249,pos,ns,0.000660931,0.000397794,1.661492352,0.097625509,pos,ns,1.01043669,-0.0000206,0.0000137,-1.506120043,0.133054627,neg,ns,0.971630007,Lrmda,Lrmda_Intron,14,22046245,22046294,22046245,22046246,50,+,CGCTAACTTGCATTTGAAACGAAAGTGCCTTAAATGTCTTTGGCTGTCAG,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,26533,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206,Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21081,cg25527392,-0.0000454,0.00000968,-4.694211839,0.00000402,loss,ns,0.0000147,0.0000164,0.89690512,0.370465536,pos,ns,0.018515389,0.004817799,3.843121735,0.000147381,pos,ns,3.831557884,-0.000629547,0.000165684,-3.799690755,0.000174372,neg,ns,0.541720724,Dusp7,Dusp7_Intergenic_downstream,9,106384567,106384616,106384615,106384616,50,+,AGCTCCCTGAGTGGTTGCCCAAGTGGGAACAATGACCCTTTCACGTCACG,Distal Intergenic,9,106374619,106375721,1103,1,Dusp7-204,9948,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,4,235584,ENSMUSG00000053716,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18721,cg03019672,-0.0000257,0.00000844,-3.041223757,0.002557354,loss,ns,-0.0000129,0.0000143,-0.896856786,0.370491289,neg,ns,-0.002031897,0.004198588,-0.483947635,0.628764723,neg,ns,0.201511832,-0.000372058,0.000144389,-2.576774705,0.010434966,neg,ns,0.891994482,Tenm4,Tenm4_Exon,7,96906145,96906194,96906193,96906194,50,-,CCAGGACCTTCAGAAGGTGACCTGGCCATCCTGGGCCTCAGTGGGGGGCG,"Exon (Tenm4-201/Tenm4, exon 33 of 33)",7,96171246,96908569,737324,1,Tenm4-201,734899,Tenm4-201;Tenm4-203;Tenm4-202,Tenm4;Tenm4;Tenm4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,17,26,23966,ENSMUSG00000048078,conserved gene and region,7,96906155,96906584,430,*,430,22,0.61627907,0.55483871,0.051162791,6.28E-11,CpGisland,TRUE,U11,Tr-P
10524,cg22759866,-0.0000163,0.00000369,-4.414561238,0.000014,loss,ns,0.00000562,0.00000627,0.896706875,0.370571172,pos,ns,-0.000285738,0.001836367,-0.155599831,0.876449728,neg,ns,0.057272989,-0.000043,0.0000632,-0.681181395,0.496265236,neg,ns,0.935332869,Npas3,Npas3_Intron,12,53995247,53995296,53995247,53995248,50,-,CGGTTCTATCAACAGTGAAGATTGAACATGACTTTTTAATAGAAAACATG,"Intron (Npas3-204/Npas3, intron 5 of 10)",12,53248157,54069532,821376,1,Npas3-204,747090,Npas3-204;Npas3-201;Npas3-203,Npas3;Npas3;Npas3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,83,103,27386,ENSMUSG00000021010,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14055,cg08333796,0.0000158,0.00000266,5.934218029,7.89E-09,gain,yes,0.00000405,0.00000452,0.896595667,0.370630438,pos,ns,0.002134046,0.001324397,1.611334102,0.108124567,pos,ns,0.966075618,-0.00000623,0.0000455,-0.136690048,0.891364524,neg,ns,0.065119134,Adgrb1,Adgrb1_fiveUTR,15,74516215,74516264,74516263,74516264,50,-,CTGGCTCCCGATTCGGGATCCAGTTTCAGAGAGCGAGAGATTGGGGAGCG,Promoter (<=1kb),15,74516195,74589464,73270,1,Adgrb1-201,20,Adgrb1-201;Adgrb1-205;Adgrb1-206,Adgrb1;Adgrb1;Adgrb1,0;-174;-567,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,5,107831,ENSMUSG00000034730,conserved gene and region,15,74516202,74517009,808,*,808,101,0.742574257,0.914723816,0.125,1.74E-87,CpGisland,TRUE,U3,Pr-B
22373,cg24518458,0.0000369,0.00000818,4.513760727,0.00000906,gain,ns,0.0000125,0.0000139,0.896339046,0.370767222,pos,ns,0.004867645,0.004072219,1.1953299,0.232871771,pos,ns,0.632883155,0.0000727,0.000140043,0.519102103,0.604059931,pos,ns,0.782807479,Atp2b2,Atp2b2_threeUTR,6,113751553,113751602,113751553,113751554,50,+,CGAATGTTTACCCGGCTTCAAGGAAGCCAAGAGTCTGGGATTGATTCACA,3' UTR,6,113743831,114042026,298196,2,Atp2b2-203,290424,Atp2b2-203;Atp2b2-201;Atp2b2-206;Atp2b2-208;Atp2b2-202,Atp2b2;Atp2b2;Atp2b2;Atp2b2;Atp2b2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,5,8,11941,ENSMUSG00000030302,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23965,cg15600328,-0.0000135,0.0000104,-1.305383003,0.192730463,loss,ns,0.0000158,0.0000176,0.896317624,0.370778642,pos,ns,-0.000389807,0.005157296,-0.075583561,0.939799169,neg,ns,0.026964943,-0.0000032,0.000177359,-0.018064863,0.98559873,neg,ns,0.712179247,Erp29,Erp29_threeUTR,5,121429414,121429463,121429414,121429415,50,-,CGCAATCCCGCGGCCTGAAATGAACCCTGCAAGGCTGTATATCAGAGGGT,3' UTR,5,121428590,121452487,23898,2,Erp29-204,23024,Erp29-204;Naa25-201;Naa25-205;Naa25-202;Naa25-203,Erp29;Naa25;Naa25;Naa25;Naa25,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,11,11,67397,ENSMUSG00000029616,mapped to different genes,5,121429273,121429444,172,*,172,10,0.523255814,0.856147337,0.058139535,0.00000923,CpGisland,TRUE,U10,Tr-S
8068,cg00015001,-0.00000456,0.00000564,-0.80789446,0.419770835,loss,ns,0.00000859,0.00000958,0.896280078,0.370798658,pos,ns,-0.000902008,0.002807193,-0.321320229,0.748184258,neg,ns,0.125991434,0.00016654,0.0000965,1.725105383,0.085505119,pos,ns,0.908355844,Pax2,Pax2_Intergenic_upstream,19,44717579,44717628,44717579,44717580,50,-,CGGCAATGCGCTCCTGACCTTGCAGGACAGCTAATCCATCCGCACATCTA,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-38466,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,19,44717536,44717731,196,*,196,11,0.515306122,0.921367521,0.056122449,0.00000383,CpGisland,TRUE,U13,Hc-P
4474,cg20768480,0.00000202,0.00000384,0.526686685,0.598787834,gain,ns,-0.00000585,0.00000652,-0.896233422,0.370823531,neg,ns,0.000372172,0.001910853,0.194767245,0.845702747,pos,ns,0.072782259,-0.0000634,0.0000657,-0.965452163,0.335070932,neg,ns,0.924972005,Cfap77,Cfap77_Intron,2,29012379,29012428,29012379,29012380,50,-,CGCACAGGAGATAATTTATGAAGCATTTAAATTAAGAGGAGCAGCTAATT,"Intron (Cfap77-203/Cfap77, intron 1 of 6)",2,28926949,29055024,128076,2,Cfap77-203,42596,Cfap77-203;Cfap77-204;Cfap77-205;Cfap77-202,Cfap77;Cfap77;Cfap77;Cfap77,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,6,329375,ENSMUSG00000079502,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4017,cg12619862,-0.00000147,0.00000251,-0.587811691,0.557086635,loss,ns,0.00000382,0.00000426,0.896192078,0.370845573,pos,ns,0.003626542,0.001247379,2.907330858,0.003908204,pos,ns,2.408022785,-0.000104651,0.0000429,-2.439572552,0.015265024,neg,ns,0.944962469,Notch1,Notch1_Intron,2,26465833,26465882,26465833,26465834,50,+,CGCACTGAGCTGTTAAGACAAAGGATTTAGAGGGATTTTCAAGATACAAA,"Intron (Notch1-201/Notch1, intron 27 of 33)",2,26457903,26503822,45920,2,Notch1-201,37940,Notch1-201;Notch1-207;Notch1-211;Notch1-208;Notch1-203;Notch1-209;Notch1-210;Notch1-202;Notch1-204,Notch1;Notch1;Notch1;Notch1;Notch1;Notch1;Notch1;Notch1;Notch1,0;-3086;0;0;0;0;0;3867;4616,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,18128,ENSMUSG00000026923,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5038,cg25604445,-0.00000293,0.000002,-1.461713063,0.14483278,loss,ns,0.00000305,0.0000034,0.896064535,0.370913576,pos,ns,0.003936581,0.000997487,3.946499247,0.0000982,pos,ns,4.008082568,-0.00010944,0.0000343,-3.190340038,0.00156655,neg,ns,0.948975016,Cpeb4,Cpeb4_threeUTR,11,31933615,31933664,31933663,31933664,50,+,TATCTTGTTTTTCCAACAGTGAACATTTTTAGGCACACTTTTCACTGACG,3' UTR,11,31872226,31935634,63409,1,Cpeb4-202,61389,Cpeb4-201;Cpeb4-202;Cpeb4-203,Cpeb4;Cpeb4;Cpeb4,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,10,67579,ENSMUSG00000020300,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1215,cg22679901,-0.00000291,0.0000134,-0.217174342,0.828215342,loss,ns,-0.0000204,0.0000227,-0.896060934,0.370915496,neg,ns,0.047379354,0.006659188,7.114884301,7.80E-12,pos,yes,11.10782967,-0.000794145,0.000229009,-3.467746529,0.000599047,neg,ns,0.318118145,Bcor,Bcor_Intron,X,12068243,12068292,12068291,12068292,50,-,GTGTTTTGGCGTTGCAGGCTTGTTTATCTTTCCGCCTTTCCTCCAAGGCG,"Intron (Bcor-202/Bcor, intron 1 of 14)",20,12036740,12080553,43814,2,Bcor-202,12261,Bcor-202;Bcor-203;Bcor-204;Bcor-206;Bcor-201;Bcor-207;Bcor-205,Bcor;Bcor;Bcor;Bcor;Bcor;Bcor;Bcor,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,56,74,71458,ENSMUSG00000040363,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14921,cg20583171,0.0000991,0.0000155,6.389695526,6.09E-10,gain,yes,-0.0000236,0.0000263,-0.895910254,0.370995846,neg,ns,0.014311308,0.007716239,1.854700064,0.064588461,pos,ns,1.189845066,0.0000858,0.000265361,0.323372978,0.746630822,pos,ns,0.653878988,Pax3,Pax3_Intron,1,78168105,78168154,78168105,78168106,50,+,CGCATTCTTTAATTGCCCTTTGAATTAATATCAAAGGGTCACAATGCGAG,"Intron (Pax3-201/Pax3, intron 4 of 8)",1,78101267,78196838,95572,2,Pax3-201,28684,Pax3-201;Pax3-202,Pax3;Pax3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,17,18505,ENSMUSG00000004872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16318,cg06307087,0.00000968,0.00000497,1.945545617,0.052613011,gain,ns,0.00000757,0.00000845,0.895885346,0.37100913,pos,ns,0.002802687,0.002475349,1.132239485,0.258408782,pos,ns,0.587692731,-0.00000509,0.0000851,-0.059771617,0.952376044,neg,ns,0.92123178,Mrm1,Mrm1_Intergenic_downstream,11,84744735,84744784,84744783,84744784,50,+,TAATACTCAGCACGCTGTGTAATTTTTATATCATTAGTTTTCATTTTCCG,Distal Intergenic,11,84814743,84815390,648,2,Mrm1-203,70606,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,37,42,217038,ENSMUSG00000018405,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14673,cg12945120,0.0000681,0.0000127,5.382023126,0.000000146,gain,yes,-0.0000193,0.0000215,-0.895845962,0.371030133,neg,ns,0.012450951,0.006299959,1.97635433,0.049000831,pos,ns,1.309796554,-0.000223144,0.000216655,-1.029949973,0.303836394,neg,ns,0.452615736,Ctnna2,Ctnna2_Intron,6,77242590,77242639,77242638,77242639,50,-,CCCTTTTCAATCTGCCCATGTCTGAGGTGCTCGGGGAAGACGCACAATCG,"Intron (Ctnna2-204/Ctnna2, intron 8 of 19)",6,76881637,77979699,1098063,2,Ctnna2-204,737060,Ctnna2-204;Ctnna2-205;Ctnna2-202;Ctnna2-201;Lrrtm1-201;Lrrtm1-202;Lrrtm1-203;Lrrtm1-204,Ctnna2;Ctnna2;Ctnna2;Ctnna2;Lrrtm1;Lrrtm1;Lrrtm1;Lrrtm1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,24,12386,ENSMUSG00000063063,conserved gene and region,6,77242605,77243155,551,*,551,46,0.626134301,0.852367501,0.083484574,1.98E-31,CpGisland,TRUE,U3,Pr-B
13592,cg19773748,-0.0000334,0.00000451,-7.407864089,1.23E-12,loss,yes,-0.00000687,0.00000767,-0.895756482,0.371077856,neg,ns,-0.006826649,0.002245909,-3.039592784,0.002570834,neg,ns,2.589926013,0.000104414,0.0000772,1.351870054,0.177402397,pos,ns,0.930165184,Gm10172,Gm10172_Intergenic_upstream,7,71498502,71498551,71498550,71498551,50,-,GATACAGTTGAATTGCCATCTGGACTTTTTAACCTCGACATTTATTTCCG,Distal Intergenic,7,71332363,71332921,559,2,Gm10172-201,-165630,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,31,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11237,cg02964555,0.000107962,0.00000719,15.01723246,1.10E-38,gain,yes,-0.0000109,0.0000122,-0.895443175,0.371244985,neg,ns,0.017891074,0.003578126,5.000123664,0.000000961,pos,ns,6.017497996,-0.000140536,0.000123051,-1.142091804,0.254297229,neg,ns,0.140773752,Nr4a2,Nr4a2_Exon,2,57110104,57110153,57110152,57110153,50,-,AGCTTCTTACCCTGGAATAGTCCAGGCTGGTCATAGCCGGGTTGGAGTCG,"Exon (Nr4a2-201/Nr4a2, exon 5 of 8)",2,57106830,57115038,8209,2,Nr4a2-201,4885,Nr4a2-201;Nr4a2-203;Nr4a2-206;Nr4a2-202;Nr4a2-205;Nr4a2-204,Nr4a2;Nr4a2;Nr4a2;Nr4a2;Nr4a2;Nr4a2,0;0;0;0;0;4220,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,25,18227,ENSMUSG00000026826,conserved gene and region,2,57110103,57110351,249,*,249,15,0.582329317,0.710886943,0.060240964,1.36E-08,CpGisland,TRUE,U13,Hc-P
7676,cg16552718,0.00000222,0.00000867,0.256546683,0.797698912,gain,ns,0.0000132,0.0000147,0.895388523,0.371274143,pos,ns,0.016423934,0.00431439,3.806780238,0.000169668,pos,ns,3.770399909,-0.000405186,0.000148372,-2.730884996,0.006678035,neg,ns,0.542029529,Npr2,Npr2_Exon,4,43632261,43632310,43632261,43632262,50,-,CGCTGGCGGTGGTGCTGCCAGAACACAACCTGAGCTATGCCTGGGCCTGG,Promoter (<=1kb),4,43631935,43651244,19310,1,Npr2-201,326,Npr2-201;Npr2-202,Npr2;Npr2,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,10,230103,ENSMUSG00000028469,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
12903,cg15706244,-0.00000744,0.00000273,-2.724523574,0.006804925,loss,ns,-0.00000415,0.00000464,-0.895348426,0.371295536,neg,ns,-0.002093357,0.001358791,-1.540603026,0.124433543,neg,ns,0.905062532,0.000065,0.0000467,1.390203301,0.165464494,pos,ns,0.931033438,Igf1r,Igf1r_Exon,7,68193360,68193409,68193360,68193361,50,+,CGGAGAGATGTCATGCAAGTGGCCAACACCACCATGTCCAGCCGAAGCAG,"Exon (Igf1r-201/Igf1r, exon 11 of 21)",7,67952827,68233668,280842,1,Igf1r-201,240533,Igf1r-201;Igf1r-204,Igf1r;Igf1r,0;-1257,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,9,16001,ENSMUSG00000005533,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12063,cg25836137,-0.00000314,0.00000333,-0.941286267,0.347291094,loss,ns,-0.00000507,0.00000566,-0.895340455,0.371299789,neg,ns,-0.003082084,0.001659092,-1.857693155,0.064160638,neg,ns,1.192731326,0.0000986,0.0000571,1.72792784,0.084997023,pos,ns,0.926895324,Efna5,Efna5_Intron,17,62625838,62625887,62625886,62625887,50,-,GCAGTGTGAAATATGAACTTGCCAACAAATGGCCAGCGTGCTGTGCCTCG,"Intron (Efna5-201/Efna5, intron 2 of 4)",17,62604184,62881317,277134,2,Efna5-201,255430,Efna5-201;Efna5-202,Efna5;Efna5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,21,13640,ENSMUSG00000048915,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25057,cg16219888,0.000000992,0.00000565,0.175388923,0.860888548,gain,ns,-0.0000086,0.0000096,-0.895325732,0.371307645,neg,ns,0.003209922,0.00281381,1.140774344,0.254844364,pos,ns,0.593724966,0.0000681,0.0000968,0.703762405,0.482109014,pos,ns,0.872097669,Fgfr2,Fgfr2_Exon,7,131974320,131974369,131974320,131974321,50,-,CGAGCCACCAAGAAGATCAGCACCTTCATAGGGACCTTCCTTGTGTGCTT,"Exon (Gpr26-201/Gpr26, exon 2 of 3)",7,130162451,133123350,2960900,2,Fgfr2-217,1148981,Fgfr2-217;Gpr26-201,Fgfr2;Gpr26,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,79,14183,ENSMUSG00000030849,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9381,cg11153006,-0.0000202,0.00000726,-2.780955466,0.005751571,loss,ns,0.000011,0.0000123,0.895138961,0.371407307,pos,ns,-0.000504514,0.003614738,-0.139571242,0.889089397,neg,ns,0.051054569,-0.000214294,0.000124311,-1.723857244,0.085730594,neg,ns,0.520003921,Kcnip4,Kcnip4_Exon,5,48509675,48509724,48509675,48509676,50,-,CGACGTTTTGGCAGCTGAGCAGGGCAAGAGCTTCATGAGCCGCTCTTTAA,"Exon (Kcnip4-201/Kcnip4, exon 2 of 9)",5,48389502,48599682,210181,2,Kcnip4-204,89958,Kcnip4-204;Kcnip4-205;Kcnip4-208;Kcnip4-201;Kcnip4-207;Kcnip4-206;Kcnip4-202,Kcnip4;Kcnip4;Kcnip4;Kcnip4;Kcnip4;Kcnip4;Kcnip4,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,6,80334,ENSMUSG00000029088,conserved gene and region,5,48509447,48509778,332,*,332,17,0.475903615,0.922222222,0.051204819,1.34E-08,CpGisland,TRUE,U15,NS
2433,cg22899100,0.00000506,0.00000227,2.226273306,0.02671439,gain,ns,-0.00000346,0.00000386,-0.895078256,0.371439704,neg,ns,0.000514156,0.001131401,0.454441508,0.649829119,pos,ns,0.187200832,0.00000727,0.0000389,0.186947142,0.851824366,pos,ns,0.05789529,Ptf1a,Ptf1a_Intron,2,19430794,19430843,19430842,19430843,50,+,CATTTTGCCTAATTGTGTCTGTCTCTGAAAGGGCAGCGCACCCCCTCCCG,"Intron (Gm13344-201/Gm13344-201, intron 1 of 1)",2,19445663,19447501,1839,1,Ptf1a-201,-14820,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,21,19213,ENSMUSG00000026735,conserved gene but different region,2,19430830,19431029,200,*,200,27,0.685,1.158301158,0.135,9.71E-25,CpGisland,TRUE,U13,Hc-P
12437,cg19195912,-0.00000523,0.00000251,-2.088462814,0.037571747,loss,ns,0.00000381,0.00000426,0.894923323,0.371522394,pos,ns,0.000292791,0.001247309,0.234737913,0.814567129,pos,ns,0.089073119,-0.0000621,0.0000429,-1.446865516,0.148944987,neg,ns,0.940422693,Gm13577,Gm13577_Intergenic_downstream,2,64326769,64326818,64326769,64326770,50,-,CGCCAGATTGTGTCTCAAGACACATATGATGAACTGAACAAAATGACCTG,Distal Intergenic,2,64474745,64474949,205,2,Gm13577-201,148180,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,17,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3601,cg11619693,0.00000319,0.00000342,0.932435085,0.351837355,gain,ns,-0.0000052,0.00000582,-0.894920205,0.371524058,neg,ns,-0.004065254,0.001703799,-2.385993803,0.017633025,neg,ns,1.753673182,0.0000803,0.0000586,1.370849731,0.171413471,pos,ns,0.903787189,Gm12067,Gm12067_Intron,11,24686074,24686123,24686122,24686123,50,-,TATCCCTAAACCACATTGTGATACACAGTGCCTTCTGTTTACGACTCCCG,"Intron (Gm12068-201/Gm12068-201, intron 2 of 3)",11,24552438,24553962,1525,2,Gm12067-201,-132161,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,58,100417843,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7886,cg17416282,0.0000051,0.00000426,1.198614668,0.231593291,gain,ns,-0.00000647,0.00000723,-0.894798611,0.371588964,neg,ns,-0.000444035,0.002118869,-0.209562461,0.834146832,neg,ns,0.078757495,-0.000139127,0.0000729,-1.909307379,0.057145462,neg,ns,0.825835589,Runx2,Runx2_threeUTR,17,44608314,44608363,44608314,44608315,50,-,CGGCTCTCAGTGAGGGATGAAATGCTTGGGAACTGCCTGGGGTCTGAAAA,3' UTR,17,44495987,44736176,240190,2,Runx2-212,127813,Runx2-212;Runx2-214;Runx2-203;Runx2-202;Runx2-213;Runx2-204;Runx2-210;Runx2-211;Runx2-207;Runx2-201;Runx2-209,Runx2;Runx2;Runx2;Runx2;Runx2;Runx2;Runx2;Runx2;Runx2;Runx2;Runx2,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,10,20,12393,ENSMUSG00000039153,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23863,cg21583010,-0.00000553,0.00000354,-1.561074526,0.119526426,loss,ns,-0.00000538,0.00000602,-0.894731232,0.371624933,neg,ns,0.00135621,0.001763152,0.769196223,0.442362488,pos,ns,0.354221708,-0.000105577,0.0000606,-1.741195475,0.082641374,neg,ns,0.946687402,Hmga2,Hmga2_Intergenic_upstream,10,120629821,120629870,120629869,120629870,50,-,TCACAGAACACCCATGAAGTCACAGCTCATATTTCTGCTTTAAATATTCG,Distal Intergenic,10,120361275,120476469,115195,2,Hmga2-201,-153401,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,3,15364,ENSMUSG00000056758,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
902,cg18543035,-0.0000449,0.00000942,-4.768495225,0.00000286,loss,ns,0.0000143,0.000016,0.894706376,0.371638202,pos,ns,0.002135248,0.004688292,0.455442618,0.649109673,pos,ns,0.187681919,-0.0000343,0.00016123,-0.212591346,0.831785444,neg,ns,0.426171307,Gm13220,Gm13220_Intron,2,9594065,9594114,9594113,9594114,50,+,TGTTTCTGCAACTGTTTTGATGATGCTTTTGAGTGTTCCCATCACTACCG,"Intron (Gm13218-201/Gm13218-201, intron 1 of 1)",2,9575836,9576343,508,1,Gm13220-201,18229,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,8,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25482,cg02482206,0.0000166,0.0000084,1.979205242,0.048677409,gain,ns,-0.0000128,0.0000143,-0.894643308,0.371671873,neg,ns,-0.00482027,0.004180295,-1.153093383,0.249760377,neg,ns,0.602476459,0.0000893,0.00014376,0.621447819,0.534761729,pos,ns,0.845709273,Plp1,Plp1_Exon,X,136832170,136832219,136832170,136832171,50,-,CGGGTGTGTCATTGTTTGGGAAAATGGCTAGGACATCCCGACAAGGTGAT,"Exon (Plp1-201/Plp1, exon 3 of 7)",20,136822671,136839733,17063,1,Plp1-201,9499,Plp1-201;Plp1-202;Plp1-203;Plp1-204,Plp1;Plp1;Plp1;Plp1,0;0;0;-1032,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,8,18823,ENSMUSG00000031425,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8571,cg03596984,-0.00000333,0.00000194,-1.717915246,0.086810636,loss,ns,0.00000294,0.00000329,0.89458827,0.371701258,pos,ns,-0.001492908,0.000963484,-1.549488737,0.122284539,neg,ns,0.912628448,0.0000289,0.0000331,0.870930953,0.384465797,pos,ns,0.946448111,Gm13475,Gm13475_Intergenic_downstream,2,45356918,45356967,45356918,45356919,50,+,CGGCTTTTGTGGTGGACACAATGTCGTGCTTCATGCATCTTGCTCAGAGA,Distal Intergenic,2,45329232,45329465,234,1,Gm13475-201,27686,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,21,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2749,cg13505797,-0.000021,0.0000121,-1.739454859,0.082947354,loss,ns,0.0000183,0.0000205,0.894578295,0.371706584,pos,ns,0.018495197,0.005999921,3.082573482,0.00223657,pos,ns,2.650417468,-0.000464729,0.000206337,-2.252284493,0.025003706,neg,ns,0.588729149,Kat6b,Kat6b_threeUTR,14,21671880,21671929,21671880,21671881,50,-,CGCATGTAAAAAAGCAAAAAAGTTATTTGTGTCTGTTTATATTGCTTCCT,3' UTR,14,21499770,21672071,172302,1,Kat6b-206,172110,Dupd1-201;Kat6b-206;Kat6b-204;Kat6b-201;Kat6b-208;Kat6b-203;Kat6b-214,Dupd1;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b,42647;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,21,54169,ENSMUSG00000021767,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10801,cg00670113,-0.00000163,0.0000033,-0.495008124,0.620945047,loss,ns,0.00000501,0.0000056,0.894530871,0.371731905,pos,ns,0.001124245,0.001640462,0.685322502,0.493652569,pos,ns,0.306578599,-0.0000597,0.0000564,-1.057568426,0.29107565,neg,ns,0.880235166,Dbn1,Dbn1_Exon,13,55476742,55476791,55476742,55476743,50,+,CGATGCCTTTATGAAAGGGCAGTACGGACGACCTGCCGAGAGAGACAGAC,"Exon (Dbn1-201/Dbn1, exon 11 of 15)",13,55473429,55488111,14683,2,Dbn1-201,11320,Dbn1-201;Dbn1-203;Dbn1-202;Dbn1-206;Dbn1-208;Dbn1-209;Dbn1-207;Dbn1-204;Prr7-201,Dbn1;Dbn1;Dbn1;Dbn1;Dbn1;Dbn1;Dbn1;Dbn1;Prr7,0;0;0;0;5353;5466;10842;9869;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,4,56320,ENSMUSG00000034675,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22794,cg07592240,0.00000457,0.00000606,0.754374483,0.451197047,gain,ns,-0.0000092,0.0000103,-0.894527506,0.371733702,neg,ns,0.001531441,0.003014264,0.508064809,0.611769213,pos,ns,0.213412382,0.000116674,0.00010366,1.125537246,0.261232077,pos,ns,0.781116107,Meis2,Meis2_Intron,2,115961667,115961716,115961715,115961716,50,-,CAATTTCAATGCATTATCTCGCCTTTTCCCTGGGGCACAAACTTCACTCG,"Intron (Meis2-201/Meis2, intron 8 of 11)",2,115863064,116065047,201984,2,Meis2-201,103331,Meis2-201;Meis2-203;Meis2-205;Meis2-206;Meis2-204;Meis2-202;Meis2-216;Meis2-217,Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,45,97,17536,ENSMUSG00000027210,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19827,cg26140588,-0.00000205,0.00000466,-0.439585376,0.660543716,loss,ns,0.00000708,0.00000792,0.894322173,0.371843348,pos,ns,-0.00101906,0.002319733,-0.439300391,0.660749948,neg,ns,0.179962862,-0.000172333,0.0000798,-2.160226109,0.031521276,neg,ns,0.822266596,Med12,Med12_Exon,X,101282741,101282790,101282789,101282790,50,-,TGGCATGTCATACCACTTGCCTCTGGTGCAGCATGTGCAGTTCATCTTCG,"Exon (Med12-204/Med12, exon 19 of 46)",20,101274030,101297465,23436,1,Med12-204,8711,Med12-204;Med12-203;Med12-201;Med12-202;Med12-209;Med12-207;Med12-208,Med12;Med12;Med12;Med12;Med12;Med12;Med12,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,15,15,59024,ENSMUSG00000079487,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3611,cg14309139,-0.00000313,0.00000264,-1.183063536,0.237690468,loss,ns,0.00000402,0.00000449,0.89405873,0.371984055,pos,ns,0.000726989,0.001316361,0.552271871,0.581160045,pos,ns,0.235704251,-0.0000653,0.0000453,-1.441464276,0.150462944,neg,ns,0.942306126,Gm12067,Gm12067_Intergenic_upstream,11,24765201,24765250,24765201,24765202,50,+,CGCCTTTTGAAGAAAATTGACCCAAACTTCATGAATATGATGAAAAATGC,Distal Intergenic,11,24552438,24553962,1525,2,Gm12067-201,-211239,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,26,58,100417843,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27486,cg01633657,-0.0000105,0.00000207,-5.081914162,0.000000647,loss,yes,-0.00000314,0.00000351,-0.893946191,0.372044173,neg,ns,-0.000483316,0.001028816,-0.469778791,0.63884335,neg,ns,0.194605622,-0.0000201,0.0000354,-0.568308648,0.570236832,neg,ns,0.974402004,Pbx1,Pbx1_Intron,1,168371080,168371129,168371128,168371129,50,-,ATTAGGCTTCTAAAATATCATTAACATGTCTCTTGATCATTAGCATAACG,"Intron (Pbx1-208/Pbx1, intron 2 of 7)",1,168119364,168432270,312907,2,Pbx1-208,61141,Pbx1-208;Pbx1-205;Pbx1-206;Pbx1-201;Pbx1-202;Pbx1-204,Pbx1;Pbx1;Pbx1;Pbx1;Pbx1;Pbx1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,84,18514,ENSMUSG00000052534,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25224,cg07004144,-0.00000893,0.00000728,-1.226628877,0.220892946,loss,ns,-0.0000111,0.0000124,-0.893885764,0.372076455,neg,ns,-0.007177724,0.003622863,-1.981229998,0.048448806,neg,ns,1.314716922,0.0000793,0.00012459,0.636140834,0.525154013,pos,ns,0.784966495,Sytl4,Sytl4_Exon,X,133941235,133941284,133941283,133941284,50,+,GACTCACCCCTTGACAAAGCTGTCTGAAGTCCCTCCTGCTTTGGCAGCCG,"Exon (Sytl4-201/Sytl4, exon 15 of 17)",20,133936385,133981783,45399,2,Sytl4-203,40499,Sytl4-203;Sytl4-201,Sytl4;Sytl4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,27359,ENSMUSG00000031255,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7363,cg26971498,0.000043,0.0000075,5.733708275,2.33E-08,gain,yes,-0.0000114,0.0000127,-0.893808718,0.372117619,neg,ns,0.003614923,0.003732292,0.968553093,0.333523255,pos,ns,0.476873879,-0.0000667,0.000128353,-0.519381951,0.603865034,neg,ns,0.104305374,Pou4f3,Pou4f3_fiveUTR,18,42395113,42395162,42395161,42395162,50,+,GCTGCAGGGTAATATATTTGGAAGCTTTGATGAGAGCCTGCTGGCACGCG,Promoter (<=1kb),18,42394539,42397249,2711,1,Pou4f3-201,574,Pou4f3-201;Pou4f3-202,Pou4f3;Pou4f3,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,7,17,18998,ENSMUSG00000024497,conserved gene but different region,18,42395159,42395444,286,*,286,29,0.65034965,0.992105263,0.101398601,1.45E-22,CpGisland,TRUE,U13,Hc-P
23404,cg14188130,0.0000649,0.00000598,10.83921244,2.00E-23,gain,yes,-0.00000909,0.0000102,-0.893675582,0.372188756,neg,ns,0.008388872,0.002978413,2.816557368,0.005165424,pos,ns,2.286894044,-0.000121876,0.000102427,-1.18987625,0.235005507,neg,ns,0.884324282,Sp4,Sp4_Exon,12,118261724,118261773,118261772,118261773,50,-,TACCTTCCTTCTCCTTCCCTACAATTAGGACAGGAACAGGCAACTCTTCG,"Exon (Sp4-201/Sp4, exon 4 of 6)",12,118234933,118301370,66438,2,Sp4-201,39597,Sp4-201;Sp4-203;Sp4-202,Sp4;Sp4;Sp4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,14,20688,ENSMUSG00000025323,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14688,cg15012446,0.000101426,0.00000822,12.34501461,9.50E-29,gain,yes,-0.0000125,0.000014,-0.893669596,0.372191955,neg,ns,0.010586604,0.004089171,2.588936325,0.010081197,pos,ns,1.996487883,-0.0000744,0.000140626,-0.528728754,0.597371967,neg,ns,0.126034764,Ctnna2,Ctnna2_Exon,6,77243850,77243899,77243898,77243899,50,+,GATCACAATCACATCTGCTCCGTGCAGGGGGACGCCTTTCAGAAACTGCG,"Exon (Lrrtm1-201/Lrrtm1, exon 2 of 3)",6,76881637,77979699,1098063,2,Ctnna2-204,735800,Ctnna2-204;Ctnna2-205;Ctnna2-202;Ctnna2-201;Lrrtm1-201;Lrrtm1-202;Lrrtm1-203;Lrrtm1-204,Ctnna2;Ctnna2;Ctnna2;Ctnna2;Lrrtm1;Lrrtm1;Lrrtm1;Lrrtm1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,16,24,12386,ENSMUSG00000063063,conserved gene and region,6,77243660,77243918,259,*,259,23,0.633204633,0.885930994,0.088803089,1.29E-16,CpGisland,TRUE,U13,Hc-P
17432,cg00867949,0.0000023,0.00000228,1.007669853,0.314398859,gain,ns,-0.00000347,0.00000388,-0.893600804,0.372228716,neg,ns,-0.0000878,0.001137046,-0.07720348,0.938511477,neg,ns,0.027560412,0.0000144,0.0000391,0.368797818,0.712530175,pos,ns,0.952815793,Crtc2,Crtc2_Exon,3,90261025,90261074,90261025,90261026,50,+,CGACGCCAGAAGGTCCCAACAGCAGCTGCCCAAACAGTTTTCGCCAACAA,"Exon (Crtc2-201/Crtc2, exon 11 of 14)",3,90254163,90264125,9963,1,Crtc2-201,6862,Crtc2-201;Crtc2-203;Crtc2-206;Crtc2-202;Crtc2-205;Crtc2-208;Crtc2-204;Crtc2-207;Dennd4b-202,Crtc2;Crtc2;Crtc2;Crtc2;Crtc2;Crtc2;Crtc2;Crtc2;Dennd4b,0;0;0;6701;0;0;2974;2060;-4111,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,5,74343,ENSMUSG00000027936,conserved gene but different region,3,90260975,90261067,93,*,93,8,0.688172043,0.775,0.086021505,0.00000681,CpGisland,TRUE,U10,Tr-S
25963,cg16274762,0.0000349,0.00000866,4.031147497,0.0000699,gain,ns,-0.0000131,0.0000147,-0.893584799,0.372237268,neg,ns,0.026849136,0.004308376,6.231845706,1.50E-09,pos,ns,8.823097399,-0.000805107,0.000148165,-5.433864331,0.000000112,neg,yes,0.34367424,Brsk2,Brsk2_threeUTR,7,142002016,142002065,142002064,142002065,50,-,CAGCCCATTGAGTAACTTCTTTGACGTAATTAAACAACTTTTTTCAGACG,3' UTR,7,141949751,142004246,54496,1,Brsk2-201,52265,Brsk2-203;Brsk2-201;Brsk2-205;Brsk2-215;Brsk2-204;Brsk2-202;Brsk2-216;Brsk2-206;Brsk2-211;Brsk2-210;Brsk2-214;Brsk2-213;Brsk2-208;Brsk2-207;Brsk2-209;Brsk2-212;Brsk2-217,Brsk2;Brsk2;Brsk2;Brsk2;Brsk2;Brsk2;Brsk2;Brsk2;Brsk2;Brsk2;Brsk2;Brsk2;Brsk2;Brsk2;Brsk2;Brsk2;Brsk2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,4,75770,ENSMUSG00000053046,conserved gene but different region,7,142002040,142002219,180,*,180,17,0.688888889,0.797913951,0.094444444,7.51E-13,CpGisland,TRUE,U11,Tr-P
15471,cg07382554,0.0000493,0.00000732,6.732995291,8.06E-11,gain,yes,0.0000111,0.0000124,0.89355781,0.372251691,pos,ns,0.006466296,0.003645012,1.774012245,0.077042661,pos,ns,1.113268723,-0.0000983,0.000125352,-0.784016487,0.433629074,neg,ns,0.064611184,Sall3,Sall3_fiveUTR,18,80986675,80986724,80986723,80986724,50,+,GCGCATGGGGCTGAGCAATTAGGCTGGTGAATAATGCATGGCCATTAGCG,Promoter (<=1kb),18,80966376,80986771,20396,2,Sall3-201,47,Sall3-201;Sall3-203,Sall3;Sall3,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,10,20689,ENSMUSG00000024565,conserved gene but different region,18,80986723,80987780,1058,*,1058,149,0.748582231,1.019017453,0.140831758,7.28E-138,CpGisland,TRUE,U3,Pr-B
5596,cg09085992,0.00000995,0.00000444,2.239301164,0.025845288,gain,ns,-0.00000674,0.00000755,-0.893536423,0.372263121,neg,ns,-0.005947788,0.002210821,-2.690307249,0.007525525,neg,ns,2.123463208,0.00000743,0.000076,0.09768398,0.922246364,pos,ns,0.812128553,Apc,Apc_Exon,18,34298645,34298694,34298693,34298694,50,+,GCACTCCACAACATCATTCACTCACAGCCTGATGACAAGAGAGGCAGGCG,"Exon (Apc-209/Apc, exon 8 of 14)",18,34220924,34313506,92583,1,Apc-209,77721,Apc-209;Apc-203;Apc-202;Apc-207;Apc-205;Apc-206,Apc;Apc;Apc;Apc;Apc;Apc,0;0;0;0;0;-2567,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,7,11789,ENSMUSG00000005871,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21448,cg07458047,0.0000699,0.000015,4.657466261,0.00000476,gain,ns,-0.0000228,0.0000255,-0.893363904,0.372355325,neg,ns,0.036666182,0.007470834,4.90791023,0.00000149,pos,ns,5.826716863,-0.001119335,0.000256921,-4.356720512,0.000018,neg,ns,0.404850773,Zswim6,Zswim6_Exon,13,107787877,107787926,107787925,107787926,50,-,AATATGTCCTTGTTTCCACAGCTGCAGGTCACTGAGGTAATCTTGCAACG,"Exon (Zswim6-204/Zswim6, exon 2 of 13)",13,107724617,107890064,165448,2,Zswim6-204,102138,Zswim6-204;Zswim6-201,Zswim6;Zswim6,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,14,26,67263,ENSMUSG00000032846,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25494,cg24498761,-0.0000245,0.00000533,-4.592100904,0.00000639,loss,ns,-0.0000081,0.00000906,-0.893337424,0.372369479,neg,ns,-0.000697523,0.002655073,-0.262713439,0.792945965,neg,ns,0.100756406,-0.000013,0.0000913,-0.142432122,0.886831217,neg,ns,0.936809679,Ppp3ca,Ppp3ca_threeUTR,3,136935188,136935237,136935188,136935189,50,+,CGGACAGCAATGGCAGTAATAGCAGCAATATTCAGTGACCACTTCCTGTT,3' UTR,3,136670124,136937727,267604,1,Ppp3ca-202,265064,Ppp3ca-202;Ppp3ca-201,Ppp3ca;Ppp3ca,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,3,19055,ENSMUSG00000028161,conserved gene but different region,3,136935069,136935189,121,*,121,9,0.578512397,0.9075,0.074380165,0.00000449,CpGisland,TRUE,NA,NRS
5961,cg25544076,-0.0000024,0.00000286,-0.839359369,0.401914487,loss,ns,0.00000435,0.00000487,0.893256032,0.372412986,pos,ns,-0.000419039,0.001425426,-0.293974724,0.768973949,neg,ns,0.114088373,0.0000116,0.000049,0.236601756,0.81312202,pos,ns,0.958101315,Matr3,Matr3_Exon,18,35572836,35572885,35572836,35572837,50,+,CGCTCCTCCAAGTAGCAATATTGAAGACTTCCATGGACTCTTACCGAAGG,"Exon (Matr3-205/Matr3, exon 2 of 3)",18,35562138,35577876,15739,1,Matr3-205,10698,Matr3-205;Matr3-211;Matr3-201;Matr3-218;Matr3-210;Matr3-207;Matr3-209;Matr3-213;Matr3-214;Matr3-215;Matr3-202;Matr3-217;Matr3-208;Matr3-206;Matr3-204;Matr3-212;Snhg4-201;Snhg4-203;Snhg4-207;Snhg4-208;Snhg4-205;Snhg4-206;Snhg4-204,Matr3;Matr3;Matr3;Matr3;Matr3;Matr3;Matr3;Matr3;Matr3;Matr3;Matr3;Matr3;Matr3;Matr3;Matr3;Matr3;Snhg4;Snhg4;Snhg4;Snhg4;Snhg4;Snhg4;Snhg4,0;10690;0;10644;0;0;0;0;0;0;0;0;0;10153;0;0;19432;0;0;19424;19423;0;19398,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,5,17184,ENSMUSG00000037236,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27713,cg12102023,0.00000128,0.00000137,0.933420854,0.351329166,gain,ns,0.00000208,0.00000233,0.893139424,0.372475322,pos,ns,0.001826061,0.000682249,2.676532857,0.007834525,pos,ns,2.105987332,-0.0000503,0.0000235,-2.145435394,0.032694583,neg,ns,0.057995616,Kif26b,Kif26b_Promoter,1,178528002,178528051,178528050,178528051,50,+,AGGTCACAACAAAACAGACCTGCTGGCTCACCAGAAGAAATGTCCTCCCG,Promoter (1-2kb),1,178529125,178716500,187376,1,Kif26b-203,-1074,Kif26b-203;Kif26b-202,Kif26b;Kif26b,-1074;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,3,269152,ENSMUSG00000026494,conserved gene and region,1,178527860,178528313,454,*,454,43,0.660792952,0.8690349,0.094713656,7.27E-32,CpGisland,TRUE,U3,Pr-B
7168,cg20467040,-0.0000169,0.00000776,-2.178560916,0.030117354,loss,ns,0.0000118,0.0000132,0.893088673,0.372502455,pos,ns,0.006017134,0.003859932,1.558870301,0.120047357,pos,ns,0.920647396,-0.000275862,0.000132743,-2.078166865,0.038516498,neg,ns,0.65609419,Lcor,Lcor_Exon,19,41558594,41558643,41558594,41558595,50,+,CGTATGAAGTTCAGGGGAAATGGTGCACTCAGCAACATCAGTGACCTTCC,"Exon (Lcor-201/Lcor, exon 8 of 8)",19,41482637,41562261,79625,1,Lcor-201,75957,Lcor-201;Lcor-204;Lcor-206;Lcor-202;Lcor-205,Lcor;Lcor;Lcor;Lcor;Lcor,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,25,212391,ENSMUSG00000025019,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10622,cg22709981,-0.0000144,0.00000322,-4.479141346,0.0000106,loss,ns,0.00000489,0.00000547,0.893018158,0.372540156,pos,ns,0.0000281,0.001603371,0.01750623,0.986044024,pos,ns,0.006103695,-0.0000709,0.0000551,-1.285465548,0.199589119,neg,ns,0.052363349,Acin1,Acin1_fiveUTR,14,54686576,54686625,54686576,54686577,50,-,CGTCCAGAGTCACCTCCTCCAGCTCCGCCATCTTGCGTGAGGTACTCGGG,Promoter (<=1kb),14,54642162,54686616,44455,2,Acin1-218,0,1700123O20Rik-201;1700123O20Rik-202;1700123O20Rik-204;1700123O20Rik-203;Acin1-201;Acin1-218;Acin1-203;Acin1-206;Acin1-212;Acin1-210,1700123O20Rik;1700123O20Rik;1700123O20Rik;1700123O20Rik;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1,0;0;0;-419;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,7,22,56215,ENSMUSG00000022185,conserved gene but different region,14,54686230,54687055,826,*,826,78,0.633171913,0.949845201,0.094430993,3.48E-57,CpGisland,TRUE,U1,Pr-A
12793,cg24643211,-0.00000178,0.00000154,-1.15405548,0.249366344,loss,ns,0.00000234,0.00000262,0.892857297,0.372626169,pos,ns,0.00140072,0.000766749,1.826830034,0.06868679,pos,ns,1.163126779,-0.0000277,0.0000264,-1.051961425,0.293636549,neg,ns,0.036440128,Chmp1b,Chmp1b_Exon,18,67205593,67205642,67205593,67205594,50,-,CGAAAAGGCCAAAATTAAAAAGGCCATTCAGAAGGGCAACATGGAAGTTG,Promoter (<=1kb),18,67205366,67207889,2524,1,Chmp1b-201,227,Chmp1b-201;Gnal-201;Gnal-204;Gnal-202,Chmp1b;Gnal;Gnal;Gnal,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,67064,ENSMUSG00000109901,mapped to different genes,18,67205141,67205594,454,*,454,43,0.601321586,1.049457048,0.094713656,7.27E-32,CpGisland,TRUE,U1,Pr-A
5756,cg13896796,0.00000103,0.00000154,0.668050218,0.504598605,gain,ns,0.00000234,0.00000262,0.892790502,0.372661889,pos,ns,0.001310094,0.000767681,1.706560189,0.088905269,pos,ns,1.0510725,-0.0000331,0.0000264,-1.25406158,0.210764436,neg,ns,0.022282092,Kctd15,Kctd15_Promoter,7,34655102,34655151,34655102,34655103,50,-,CGCTTTCAGCTGGGCATAAATTTTCGGCTCCCAAATAAGTAACACAGGGC,Promoter (<=1kb),7,34639019,34655509,16491,2,Kctd15-201,358,Kctd15-202;Kctd15-203;Kctd15-201;Kctd15-208;Kctd15-204;Kctd15-205;Kctd15-207,Kctd15;Kctd15;Kctd15;Kctd15;Kctd15;Kctd15;Kctd15,0;0;0;0;0;0;1581,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,7,25,233107,ENSMUSG00000030499,conserved gene and region,7,34655098,34655231,134,*,134,13,0.589552239,1.116666667,0.097014925,4.65E-10,CpGisland,TRUE,NA,NRS
6532,cg27064916,-0.000000777,0.0000028,-0.277291938,0.781740768,loss,ns,-0.00000425,0.00000476,-0.892790463,0.372661909,neg,ns,-0.004026893,0.001395401,-2.885832772,0.004177707,neg,ns,2.379062065,0.000137828,0.000048,2.872144543,0.004358021,pos,ns,0.937556434,Exoc6,Exoc6_Intron,19,37636370,37636419,37636370,37636371,50,+,CGCCTCATGCTGTCTTTGATTGGCACAGCCTGGCAGGGAGGATGGATGAA,"Intron (Exoc6-203/Exoc6, intron 19 of 22)",19,37520879,37684059,163181,1,Exoc6-203,115491,Exoc6-203;Exoc6-201;Exoc6-202,Exoc6;Exoc6;Exoc6,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,107371,ENSMUSG00000053799,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6583,cg20271991,0.00000985,0.00000554,1.776737669,0.076592006,gain,ns,0.00000841,0.00000942,0.892724372,0.372697254,pos,ns,-0.005207838,0.002759381,-1.887320788,0.060051242,neg,ns,1.221478006,0.000211915,0.0000949,2.233149948,0.026252532,pos,ns,0.096026822,Zfp536,Zfp536_Promoter,7,37773691,37773740,37773691,37773692,50,+,CGCCTGCCATTAGAGGCGACTTTATTTACAGACACTATTTAGGAGATCAT,Promoter (<=1kb),7,37569629,37773641,204013,2,Zfp536-208,-50,Zfp536-202;Zfp536-201;Zfp536-203;Zfp536-206;Zfp536-209;Zfp536-208;Zfp536-205;Zfp536-207;Zfp536-210,Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536,0;0;0;0;0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,4,112,243937,ENSMUSG00000043456,conserved gene and region,7,37773505,37773708,204,*,204,20,0.558823529,1.259259259,0.098039216,2.20E-15,CpGisland,TRUE,U13,Hc-P
9526,cg14411456,-0.0000511,0.0000171,-2.985728088,0.003054423,loss,ns,-0.0000259,0.0000291,-0.892656802,0.372733392,neg,ns,0.0306868,0.008513077,3.604666053,0.000364048,pos,ns,3.438841215,-0.00090763,0.000292764,-3.10021179,0.002111362,neg,ns,0.27619324,Nav2,Nav2_Intron,7,49159202,49159251,49159202,49159203,50,-,CGAGACAGGCTGTCTGGGAGCTTGGCCAGCCTCCCACTGCCCCGGACACC,"Intron (Nav2-204/Nav2, intron 2 of 39)",7,48959097,49606821,647725,1,Nav2-204,200105,Nav2-204,Nav2,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,7,78286,ENSMUSG00000052512,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18261,cg00376184,-0.0000023,0.00000283,-0.814152514,0.41618253,loss,ns,0.00000429,0.0000048,0.892630974,0.372747206,pos,ns,0.00392168,0.001406786,2.787687441,0.005636317,pos,ns,2.249004616,-0.0000715,0.0000484,-1.478197652,0.140370179,neg,ns,0.937866066,Ap3b1,Ap3b1_Intergenic_downstream,13,94619152,94619201,94619152,94619153,50,+,CGGGATGGAATTCCAGAGCATATTTTTCTAATTTATGGATGGACAATAAA,Distal Intergenic,13,94542303,94547867,5565,1,Ap3b1-202,76849,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,33,55,11774,ENSMUSG00000021686,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14731,cg05859116,-0.0000133,0.0000129,-1.035744624,0.301128561,loss,ns,0.0000195,0.0000219,0.8925479,0.372791641,pos,ns,-0.003381596,0.006413861,-0.527232416,0.598409302,neg,ns,0.223001664,0.000214103,0.000220572,0.970673268,0.332467746,pos,ns,0.48953731,Pea15b,Pea15b_Intergenic_downstream,5,77484426,77484475,77484426,77484427,50,-,CGTGTGACAGGTGTTTACATTATTAAGTAAAAGCATTTAAACAGCGACCT,Distal Intergenic,5,77511178,77511564,387,2,Pea15b-201,27138,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,3,231332,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18244,cg26014931,0.0000963,0.00000832,11.5749011,5.41E-26,gain,yes,-0.0000126,0.0000141,-0.892161806,0.372998194,neg,ns,0.012512854,0.004139157,3.023044016,0.002711344,pos,ns,2.566815301,-0.000126406,0.000142345,-0.888024191,0.375216221,neg,ns,0.20862374,Ap3b1,Ap3b1_Intergenic_downstream,13,94595745,94595794,94595793,94595794,50,-,TAATTAACCCTTGGGCTAAGTAGGCAGGTACATGGCGGTGGCCGCAGGCG,Distal Intergenic,13,94542303,94547867,5565,1,Ap3b1-202,53491,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,33,55,11774,ENSMUSG00000021686,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
20490,cg24647663,-0.0000275,0.0000134,-2.060587705,0.040176454,loss,ns,-0.0000202,0.0000227,-0.891975162,0.373098072,neg,ns,0.037241277,0.006649713,5.600433838,4.72E-08,pos,ns,7.326370657,-0.001431598,0.000228683,-6.260182332,1.28E-09,neg,yes,0.45653046,Acbd4,Acbd4_Exon,11,103103932,103103981,103103932,103103933,50,+,CGATTCTACAGTTACTACAAGCAGGCCACCATGGGGCCCTGCCTGGTCCC,"Exon (Acbd4-202/Acbd4, exon 4 of 10)",11,103101682,103112197,10516,1,Acbd4-203,2250,Acbd4-203;Acbd4-202;Acbd4-206;Acbd4-209;Acbd4-201;Acbd4-211;Acbd4-207;Acbd4-216;Acbd4-205;Acbd4-208;Acbd4-214;Acbd4-212;Acbd4-210;Acbd4-213;Acbd4-215;Acbd4-204;Plcd3-201;Plcd3-205;Plcd3-204,Acbd4;Acbd4;Acbd4;Acbd4;Acbd4;Acbd4;Acbd4;Acbd4;Acbd4;Acbd4;Acbd4;Acbd4;Acbd4;Acbd4;Acbd4;Acbd4;Plcd3;Plcd3;Plcd3,0;0;0;0;0;2223;0;2206;0;0;0;0;0;-724;-2202;-2223;-2274;-2314;-2341,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,67131,ENSMUSG00000056938,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
6405,cg09994969,0.0000173,0.0000051,3.389591483,0.000790498,gain,ns,0.00000773,0.00000866,0.891832875,0.373174223,pos,ns,-0.001937277,0.00253831,-0.763215149,0.445915507,neg,ns,0.350747424,0.000182187,0.0000873,2.087089025,0.037696648,pos,ns,0.887759744,Zfp536,Zfp536_Intergenic_downstream,7,37146795,37146844,37146843,37146844,50,-,ATGCAAAGCAATGCTTGGATTATTTTTGACTGTCAAACCACAAATCAACG,Distal Intergenic,7,37472135,37479986,7852,2,Zfp536-204,333191,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,112,243937,ENSMUSG00000043456,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11592,cg06591875,-0.00000311,0.00000162,-1.921377087,0.055600907,loss,ns,0.00000245,0.00000275,0.89157648,0.37331147,pos,ns,0.001761691,0.000804545,2.189672841,0.029293047,pos,ns,1.533235445,-0.0000719,0.0000277,-2.599198491,0.009791072,neg,ns,0.049119298,Pdzd8,Pdzd8_Exon,19,59345186,59345235,59345186,59345187,50,+,CGTCTTGGTCTGCAGCAGCTCCTCGAACTCCACCTTGATCTTCTTGGTGA,Promoter (<=1kb),19,59297178,59345780,48603,2,Pdzd8-201,545,Pdzd8-201,Pdzd8,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,107368,ENSMUSG00000074746,conserved gene and region,19,59344749,59346162,1414,*,1414,187,0.719943423,1.021076614,0.132248939,9.24E-167,CpGisland,TRUE,U1,Pr-A
12153,cg25488417,0.0000828,0.0000071,11.65186431,2.89E-26,gain,yes,-0.0000108,0.0000121,-0.891479435,0.373363426,neg,ns,0.007982124,0.003535819,2.257503367,0.024672195,pos,ns,1.607792203,-0.000116647,0.000121597,-0.959295337,0.338157565,neg,ns,0.213733655,Skor1,Skor1_Intron,9,63139945,63139994,63139993,63139994,50,+,ATTGTTAAATTACCTTCAATTTAAATCCAAATGACTGAGCCAACATTGCG,"Intron (Skor1-203/Skor1, intron 7 of 8)",9,63138170,63147011,8842,2,Skor1-203,7017,Skor1-203;Skor1-202;Skor1-201,Skor1;Skor1;Skor1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,15,207667,ENSMUSG00000022245,conserved gene but different region,9,63139993,63140047,55,*,55,8,0.709090909,1.164021164,0.145454546,0.000000106,CpGisland,TRUE,U13,Hc-P
18719,cg00307913,-0.0000292,0.0000047,-6.223709347,1.57E-09,loss,yes,0.00000711,0.00000798,0.891413741,0.3733986,pos,ns,-0.002793563,0.002336976,-1.195375157,0.232854122,neg,ns,0.63291607,0.0000988,0.0000804,1.229187389,0.21993374,pos,ns,0.924490661,Cdk5rap3,Cdk5rap3_Intergenic_downstream,11,96902927,96902976,96902927,96902928,50,-,CGTTAATCACAGTTAAAAGAAGTAATGAGCGTCTCCCCAAAGCCTGGGTG,Distal Intergenic,11,96907816,96908758,943,2,Cdk5rap3-210,5831,Cdk5rap3-201;Cdk5rap3-205;Cdk5rap3-210,Cdk5rap3;Cdk5rap3;Cdk5rap3,13520;13520;5782,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,5,80280,ENSMUSG00000018669,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10560,cg10045491,-0.00000313,0.00000201,-1.559983029,0.11978416,loss,ns,0.00000304,0.00000341,0.891322264,0.373447582,pos,ns,0.000369051,0.000999511,0.369231833,0.712207001,pos,ns,0.147393761,-0.0000223,0.0000344,-0.649751488,0.516333923,neg,ns,0.963917187,Gm12469,Gm12469_Intergenic_upstream,4,54354575,54354624,54354575,54354576,50,+,CGGCTGTGTTTTGGGTTCAGCAAACGTCCCAAACGTTATGGGATTGGCAA,Distal Intergenic,4,54235670,54235876,207,2,Gm12469-201,-118699,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,9,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25520,cg13592061,-0.00000172,0.00000198,-0.870719663,0.384581002,loss,ns,0.00000299,0.00000336,0.89131105,0.373453587,pos,ns,0.001278971,0.000983842,1.299976395,0.194574804,pos,ns,0.710913398,-0.0000612,0.0000338,-1.809818944,0.071292206,neg,ns,0.957831205,Mgmt,Mgmt_Intron,7,137092297,137092346,137092345,137092346,50,-,AGTTCTGTGCTTCAGCCCGGCAACACAAAAATACATCAAGACCAATTACG,"Intron (Mgmt-201/Mgmt, intron 3 of 4)",7,136894614,137130266,235653,1,Mgmt-201,197683,Mgmt-201,Mgmt,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,16,17314,ENSMUSG00000054612,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18466,cg07392883,-0.0000018,0.00000186,-0.968924158,0.333338367,loss,ns,0.00000281,0.00000316,0.891286928,0.373466503,pos,ns,0.001283914,0.000925147,1.387794992,0.16619615,pos,ns,0.779379041,-0.0000402,0.0000318,-1.2634162,0.207388976,neg,ns,0.970424826,Cnot1,Cnot1_fiveUTR,8,95788710,95788759,95788758,95788759,50,-,GCGAGAGCGAGTCAAGATTCATTGCTGGTTGGGGCGGAAGCAGGCGGCCG,5' UTR,8,95719451,95807462,88012,2,Cnot1-202,18703,Cnot1-202;Cnot1-201;Cnot1-203;Cnot1-216;Cnot1-217;Cnot1-207;Cnot1-209,Cnot1;Cnot1;Cnot1;Cnot1;Cnot1;Cnot1;Cnot1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,24,234594,ENSMUSG00000036550,conserved gene and region,8,95788711,95788768,58,*,58,7,0.672413793,1.16,0.120689655,0.00000369,CpGisland,TRUE,U10,Tr-S
20604,cg00746259,0.00000338,0.00000666,0.506559009,0.612824363,gain,ns,0.0000101,0.0000113,0.891220356,0.373502153,pos,ns,0.001422756,0.003316092,0.429045984,0.668187767,pos,ns,0.175101479,0.00000189,0.00011404,0.016538095,0.986815749,pos,ns,0.832767393,Gm8748,Gm8748_Intergenic_upstream,8,103876743,103876792,103876743,103876744,50,+,CGCAGCTTATTAAGTTGTTCAATTGCATGGGAAATGATTAGTGTCTGTAA,Distal Intergenic,8,104071149,104071735,587,1,Gm8748-201,-194357,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,6,667656,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4853,cg06227914,0.000000183,0.00000253,0.072569003,0.942195892,gain,ns,-0.00000382,0.00000429,-0.891126288,0.373552531,neg,ns,-0.001719383,0.001257378,-1.367434978,0.172479607,neg,ns,0.763262246,0.0000639,0.0000432,1.476620768,0.140792412,pos,ns,0.870381571,Usp20,Usp20_Exon,2,31010428,31010477,31010428,31010429,50,-,CGGGCCGAGCCATCTCTGAGAAGGAGCGGATGAAGGACCGCAAGTTCTCC,"Exon (Usp20-202/Usp20, exon 11 of 25)",2,30982279,31023586,41308,1,Usp20-202,28149,Usp20-202;Usp20-201;Usp20-211;Usp20-209;Usp20-206,Usp20;Usp20;Usp20;Usp20;Usp20,0;28065;0;14380;11588,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,74270,ENSMUSG00000026854,conserved gene and region,2,31010231,31010491,261,*,261,16,0.624521073,0.662857143,0.061302682,3.07E-09,CpGisland,TRUE,NA,NRS
24911,cg06586499,-0.00000142,0.0000054,-0.263779398,0.792125169,loss,ns,-0.00000817,0.00000917,-0.891067507,0.373584014,neg,ns,-0.003808924,0.002686939,-1.417569654,0.15732076,neg,ns,0.803213965,0.0000718,0.0000924,0.777384658,0.437524692,pos,ns,0.874815295,Sfswap,Sfswap_threeUTR,5,129504077,129504126,129504077,129504078,50,-,CGAATAGAGGCCCTGTGTGATGAAGAGAGGTATTTAGCCTTGCATACGGA,3' UTR,5,129501221,129571384,70164,1,Sfswap-201,2856,Sfswap-201;Sfswap-204;Sfswap-212;Sfswap-213;Sfswap-214;Sfswap-208;Sfswap-203;Sfswap-215,Sfswap;Sfswap;Sfswap;Sfswap;Sfswap;Sfswap;Sfswap;Sfswap,0;0;0;0;0;0;0;-215,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,5,231769,ENSMUSG00000029439,conserved gene but different region,5,129503986,129504124,139,*,139,11,0.575539568,0.985815603,0.079136691,0.000000128,CpGisland,TRUE,U10,Tr-S
14862,cg07005811,-0.0000128,0.00000222,-5.772383474,0.000000019,loss,yes,0.00000336,0.00000377,0.891051916,0.373592364,pos,ns,0.002964117,0.00110449,2.683697428,0.007672405,pos,ns,2.115068458,-0.0000913,0.000038,-2.402835792,0.016855979,neg,ns,0.93740067,Phf12,Phf12_Exon,11,78023640,78023689,78023688,78023689,50,-,ACACCAGCACTTTGCAAAGAAAGACTGTCCAATCACAGATAGGACCTCCG,"Exon (Phf12-202/Phf12, exon 9 of 11)",11,77982754,78026214,43461,1,Phf12-202,40886,Phf12-202;Phf12-201;Phf12-207;Phf12-206;Phf12-208;Phf12-205;Phf12-203;Phf12-204,Phf12;Phf12;Phf12;Phf12;Phf12;Phf12;Phf12;Phf12,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,14,27,268448,ENSMUSG00000037791,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20993,cg26660486,-0.00000424,0.00000141,-2.996022446,0.002956007,loss,ns,0.00000214,0.0000024,0.890955868,0.37364381,pos,ns,-0.001418299,0.000703931,-2.01482589,0.04478599,neg,ns,1.348857823,0.0000443,0.0000242,1.828308832,0.068464061,pos,ns,0.958330411,Tanc2,Tanc2_Exon,11,105919952,105920001,105920000,105920001,50,-,ATTTTGGAATGGCGGAGGAATTTGCTACTAAGGCCCTGGAGCTGAAACCG,"Exon (Tanc2-202/Tanc2, exon 25 of 26)",11,105589991,105929304,339314,1,Tanc2-202,329961,Tanc2-202;Tanc2-204;Tanc2-201;Tanc2-205,Tanc2;Tanc2;Tanc2;Tanc2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,15,20,77097,ENSMUSG00000053580,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16658,cg15204258,-0.0000154,0.00000781,-1.969759693,0.049755911,loss,ns,0.0000118,0.0000133,0.890840998,0.373705344,pos,ns,0.004004549,0.003884642,1.030866885,0.303406843,pos,ns,0.517974629,-0.000106691,0.000133593,-0.79863142,0.425115576,neg,ns,0.750922665,Tpbg,Tpbg_Exon,9,85845129,85845178,85845129,85845130,50,+,CGCAAGGGGATAAAAAAGTGGATGCATAACATCAGAGATGCCTGCAGGGA,"Exon (Tpbg-201/Tpbg, exon 2 of 2)",9,85842380,85847040,4661,1,Tpbg-201,2749,Tpbg-201;Tpbg-202;Tpbg-203,Tpbg;Tpbg;Tpbg,0;0;1768,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,21983,ENSMUSG00000035274,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
24236,cg24056059,-0.0000021,0.000000914,-2.298255501,0.022212593,loss,ns,0.00000138,0.00000155,0.890839911,0.373705926,pos,ns,0.000592184,0.000454832,1.30198449,0.193888275,pos,ns,0.712448453,-0.0000136,0.0000156,-0.871548943,0.384128964,neg,ns,0.969735084,Gm12902,Gm12902_Intergenic_downstream,4,124087199,124087248,124087199,124087200,50,-,CGGAGTGACCCCTGAAATTAAACATTATTACAGAGCGGATATTTAAAAAG,Distal Intergenic,4,123926234,123926555,322,1,Gm12902-201,161014,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,34,34,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24045,cg05925239,-8.99E-08,0.000000773,-0.116277579,0.907507844,loss,ns,-0.00000117,0.00000131,-0.890801322,0.373726599,neg,ns,0.001107818,0.000384977,2.877622871,0.004285021,pos,ns,2.368047038,-0.0000369,0.0000132,-2.788268729,0.005626464,neg,ns,0.014206463,Bcar3,Bcar3_Exon,3,122292948,122292997,122292948,122292949,50,-,CGACTCCGCCGGGACTCGAACCCGGAACCTTTGAATGCCTTCAGCCTCTA,Promoter (1-2kb),3,122294136,122427148,133013,1,Bcar3-202,-1188,Bcar3-202,Bcar3,-1139,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,8,29815,ENSMUSG00000028121,conserved gene and region,3,122292926,122294040,1115,*,1115,150,0.722869955,1.030721351,0.134529148,3.20E-135,CpGisland,TRUE,NA,NRS
26377,cg06624291,0.0000219,0.00000475,4.605905271,0.000006,gain,ns,-0.00000719,0.00000807,-0.890781754,0.373737082,neg,ns,0.0054734,0.002363747,2.315560472,0.021234736,pos,ns,1.672953124,-0.000254283,0.0000813,-3.128131539,0.001926312,neg,ns,0.164127559,Nkx2-2,Nkx2-2_fiveUTR,2,147186392,147186441,147186392,147186393,50,+,CGAGGAAAAAATGGGCCATTGCCCGAGCGATCAGTCCATATAAGGCTGGG,Promoter (<=1kb),2,147183083,147186404,3322,2,Nkx2-2-201,0,Nkx2-2-203;Nkx2-2-201;Nkx2-2-202;Nkx2-2-204,Nkx2-2;Nkx2-2;Nkx2-2;Nkx2-2,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,30,18088,ENSMUSG00000027434,conserved gene and region,2,147186231,147186452,222,*,222,22,0.657657658,0.919254658,0.099099099,5.45E-17,CpGisland,TRUE,U13,Hc-P
15363,cg24044962,0.00000582,0.00000478,1.216739994,0.224628694,gain,ns,-0.00000723,0.00000812,-0.890735416,0.373761907,neg,ns,-0.006353833,0.00237937,-2.670384117,0.00797611,neg,ns,2.098208855,0.000172096,0.0000818,2.103183613,0.036255433,pos,ns,0.768502228,Gm46388,Gm46388_Intergenic_downstream,13,80515089,80515138,80515089,80515090,50,+,CGGCAGAAAGGTTTGTGGCTGGACGGTGATGGTATTAATCATTAAGAGCC,Distal Intergenic,13,80493009,80493484,476,1,Gm46388-201,22080,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,11,108168047,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10564,cg05978546,-0.00000332,0.00000196,-1.691422553,0.091761098,loss,ns,0.00000297,0.00000333,0.890678986,0.373792141,pos,ns,0.00067956,0.00097617,0.696149387,0.48685688,pos,ns,0.312598688,0.0000483,0.0000336,1.439973556,0.150883974,pos,ns,0.064711724,Fnip1,Fnip1_fiveUTR,11,54438168,54438217,54438168,54438169,50,-,CGTGGCCGTTTGAAGTGACTAATTTCTGTCATATGACTGAGGCGCCCATG,Promoter (<=1kb),11,54438199,54518235,80037,1,Fnip1-201,0,Fnip1-201,Fnip1,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,7,216742,ENSMUSG00000035992,conserved gene and region,11,54437949,54438290,342,*,342,41,0.722222222,0.932189868,0.119883041,5.68E-35,CpGisland,TRUE,U2,Pr-W
15983,cg15743846,0.0000997,0.0000162,6.16032063,2.25E-09,gain,yes,-0.0000245,0.0000275,-0.890660458,0.373802068,neg,ns,0.040568159,0.008051138,5.038810414,0.000000797,pos,ns,6.098365497,-0.001540139,0.000276878,-5.562518054,5.75E-08,neg,yes,0.272616514,Tshz1,Tshz1_Intron,18,84083552,84083601,84083552,84083553,50,+,CGTGTAGAGGAAAGAATGGAAACACTAAGCCTGCCAACTTTTGATTGACC,"Intron (Tshz1-201/Tshz1, intron 1 of 1)",18,84011627,84086404,74778,2,Tshz1-201,2803,Tshz1-201;Tshz1-202;Tshz1-203;Tshz1-204;Zadh2-201,Tshz1;Tshz1;Tshz1;Tshz1;Zadh2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,18,110796,ENSMUSG00000046982,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17100,cg04679564,0.00000961,0.0000052,1.846672116,0.065747644,gain,ns,-0.00000787,0.00000884,-0.890519217,0.373877749,neg,ns,0.005918986,0.002589862,2.285444327,0.022961651,pos,ns,1.638996889,-0.0002404,0.0000891,-2.699146968,0.007333053,neg,ns,0.909438522,Snx14,Snx14_threeUTR,9,88394498,88394547,88394498,88394499,50,+,CGGGGAGTATTAGGTGTGCTCACAGCCTCCACTGGAGAATCATCTTCCAT,3' UTR,9,88376747,88438951,62205,2,Snx14-209,44404,Gm10163-201;Snx14-209;Snx14-204;Snx14-203;Snx14-205;Snx14-206;Snx14-207;Snx14-201;Snx14-208,Gm10163;Snx14;Snx14;Snx14;Snx14;Snx14;Snx14;Snx14;Snx14,3661;0;0;0;0;0;0;0;-24,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,2,244962,ENSMUSG00000032422,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19997,cg21852513,0.000104641,0.00000805,13.00347975,3.77E-31,gain,yes,-0.0000122,0.0000137,-0.890393108,0.373945329,neg,ns,0.014423488,0.004005154,3.601232156,0.000368694,pos,ns,3.43333413,-0.000252827,0.000137737,-1.835577462,0.067377952,neg,ns,0.276852142,Nhlh2,Nhlh2_Intergenic_downstream,3,102023463,102023512,102023463,102023464,50,+,CGAATGGAACCAAATTACAGGCCCGTCTGTCACCTCCTCTGGGAGAAGGT,Distal Intergenic,3,102010155,102014506,4352,1,Nhlh2-203,13308,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,5,18072,ENSMUSG00000048540,conserved gene and region,3,102023357,102023691,335,*,335,30,0.680597015,0.806128178,0.089552239,1.24E-21,CpGisland,TRUE,U3,Pr-B
14871,cg18164741,0.00000248,0.00000433,0.571918981,0.567791335,gain,ns,-0.00000655,0.00000736,-0.890243202,0.374025673,neg,ns,0.00312708,0.002154804,1.451213377,0.147731626,pos,ns,0.830526521,-0.000125519,0.0000741,-1.693838359,0.091300433,neg,ns,0.93373145,Phf12,Phf12_Exon,11,78028934,78028983,78028934,78028935,50,-,CGCCAACCCCCCCAAGCAGTATTGTTGCCAAAGTGCAGAGTGTCATCAGT,"Exon (Phf12-201/Phf12, exon 14 of 15)",11,77982802,78030539,47738,1,Phf12-201,46132,Dhrs13-201;Dhrs13-204;Dhrs13-203;Dhrs13-202;Phf12-202;Phf12-201;Phf12-207;Phf12-206;Phf12-208;Phf12-205;Phf12-203;Phf12-204,Dhrs13;Dhrs13;Dhrs13;Dhrs13;Phf12;Phf12;Phf12;Phf12;Phf12;Phf12;Phf12;Phf12,-3297;-3366;-3369;-3376;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,Exon,14,27,268448,ENSMUSG00000037791,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26024,cg24125696,-0.00000301,0.0000026,-1.156725952,0.248274926,loss,ns,0.00000393,0.00000442,0.890232607,0.374031352,pos,ns,0.002496016,0.001294415,1.928297278,0.054731206,pos,ns,1.261764978,-0.000109308,0.0000445,-2.455539243,0.014616012,neg,ns,0.940206763,Etnk1,Etnk1_Intron,6,143192843,143192892,143192891,143192892,50,+,TTTCTTCATCTGCTACAGATTAGGTATGCCATTGTTGCTGCCATGTGGCG,"Intron (Etnk1-203/Etnk1, intron 4 of 7)",6,143167221,143218497,51277,1,Etnk1-203,25622,Etnk1-203;Etnk1-201;Etnk1-202;Etnk1-204,Etnk1;Etnk1;Etnk1;Etnk1,0;0;25589;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,10,75320,ENSMUSG00000030275,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
12751,cg04243635,0.000077,0.00000765,10.06169658,8.57E-21,gain,yes,-0.0000116,0.000013,-0.890188476,0.374055006,neg,ns,0.012518351,0.00380909,3.286441653,0.001131034,pos,ns,2.946524504,-0.0000645,0.000130994,-0.492105474,0.622993084,neg,ns,0.144570411,Phox2b,Phox2b_Promoter,5,67098432,67098481,67098432,67098433,50,+,CGTCTCATCGCAAAGTAAATAAATTATGCCTATCATTTTGGCAGCTTAAG,Promoter (<=1kb),5,67094399,67099301,4903,2,Phox2b-201,820,Phox2b-201;Phox2b-202,Phox2b;Phox2b,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,13,28,18935,ENSMUSG00000012520,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
16330,cg12793781,0.0000225,0.00000666,3.380968476,0.000814805,gain,ns,-0.0000101,0.0000113,-0.89016213,0.374069128,neg,ns,0.001847541,0.003314296,0.557445851,0.57762513,pos,ns,0.238353921,0.000321057,0.000113978,2.816826973,0.0051612,pos,ns,0.853719425,Exoc6b,Exoc6b_Intron,6,84747091,84747140,84747139,84747140,50,+,GGAGTCATGTCTCTCTCCCTTCAGCTTCTTTGTTTGCCCTTCAAAATTCG,"Intron (Exoc6b-203/Exoc6b, intron 19 of 21)",6,84618487,85069513,451027,2,Exoc6b-203,322373,Exoc6b-203,Exoc6b,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,8,75914,ENSMUSG00000033769,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12213,cg03185194,-0.0000178,0.00000494,-3.607768362,0.000359898,loss,ns,-0.00000747,0.0000084,-0.890110461,0.374096825,neg,ns,-0.001375618,0.002459739,-0.559253815,0.576392312,neg,ns,0.23928182,-0.0000479,0.0000846,-0.566691389,0.571333932,neg,ns,0.917130029,Iqch,Iqch_Intron,9,63488822,63488871,63488822,63488823,50,-,CGATGAGATGGAAAATTATGCTGCTGTAGAAGGTAACATAATGTAAAACA,"Intron (Gm16759-204/Gm16759-204, intron 3 of 3)",9,63421455,63602493,181039,2,Iqch-201,113622,Iqch-201;Iqch-203;Iqch-204;Iqch-202;Iqch-206,Iqch;Iqch;Iqch;Iqch;Iqch,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,22,78250,ENSMUSG00000037801,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8869,cg26156471,-0.000013,0.00000287,-4.53609011,0.0000082,loss,ns,-0.00000433,0.00000487,-0.890084394,0.374110798,neg,ns,0.003278776,0.001426014,2.29925934,0.022154812,pos,ns,1.65453193,-0.000119477,0.000049,-2.436282752,0.015401873,neg,ns,0.940603337,Gtpbp2,Gtpbp2_threeUTR,17,46165476,46165525,46165476,46165477,50,-,CGGACAGCAGAAGAGATCTGTGAGAGCAGCTCCAAGATGATCACCTTCAT,3' UTR,17,46161032,46169368,8337,1,Gtpbp2-211,4444,Gtpbp2-211;Gtpbp2-201;Gtpbp2-203;Gtpbp2-217;Gtpbp2-206;Gtpbp2-204;Gtpbp2-216;Gtpbp2-209;Gtpbp2-215;Gtpbp2-214;Gtpbp2-212;Gtpbp2-202;Gtpbp2-205;Gtpbp2-213;Gtpbp2-210;Gtpbp2-208;Gtpbp2-207,Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2,0;0;4427;0;4365;4315;4181;2443;0;0;0;0;0;-1342;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,threeUTR,7,7,56055,ENSMUSG00000023952,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18018,cg22369254,0.00000852,0.0000125,0.682492109,0.495437493,gain,ns,0.0000189,0.0000212,0.889990876,0.374160933,pos,ns,0.008130648,0.00621458,1.308318087,0.191734648,pos,ns,0.717299399,0.0000858,0.000213719,0.401670218,0.688203511,pos,ns,0.739504452,Pola1,Pola1_Intron,X,93310403,93310452,93310451,93310452,50,-,CTCCCAGCAGGTGGAGCATTTAAAATAAATAGCATTTCCTACAAAACGCG,"Intron (Pola1-201/Pola1, intron 36 of 36)",20,93304767,93632155,327389,2,Pola1-201,321703,Pola1-201,Pola1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,59,62,18968,ENSMUSG00000006678,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15850,cg19044063,0.0000359,0.0000132,2.729450001,0.006706471,gain,ns,0.0000199,0.0000224,0.889989504,0.374161668,pos,ns,0.009321872,0.006550452,1.423088326,0.155716122,pos,ns,0.807666421,-0.0000881,0.00022527,-0.390957573,0.69609715,neg,ns,0.365504913,Mef2c,Mef2c_threeUTR,13,83662532,83662581,83662532,83662533,50,+,CGAATTCCACTCCCCCATTGGACTCACCAGACCTTCGCCGGACGAAAGGG,3' UTR,13,83504034,83663343,159310,1,Mef2c-218,158498,Mef2c-218;Mef2c-228;Mef2c-201;Mef2c-202;Mef2c-222;Mef2c-223;Mef2c-227;Mef2c-213;Mef2c-214;Mef2c-212;Mef2c-203;Mef2c-219;Mef2c-225;Mef2c-230;Mef2c-211,Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,10,41,17260,ENSMUSG00000005583,mapped to different genes,13,83662502,83662606,105,*,105,10,0.590476191,1.097178683,0.095238095,0.000000101,CpGisland,TRUE,NA,NRS
7641,cg15066284,-0.0000163,0.0000139,-1.173844884,0.241358191,loss,ns,-0.000021,0.0000236,-0.889978675,0.374167474,neg,ns,-0.006350522,0.006907103,-0.919419066,0.358591271,neg,ns,0.445400287,0.000403307,0.000237535,1.697888531,0.090532307,pos,ns,0.363489302,Zbtb20,Zbtb20_Intron,16,43540270,43540319,43540318,43540319,50,-,GGCAGTAGGGATACACATCCACAGCAACCAATATGTGCAACATATGGTCG,"Intron (Zbtb20-211/Zbtb20, intron 4 of 4)",16,42907542,43569781,662240,1,Zbtb20-211,632728,Zbtb20-211;Zbtb20-217;Zbtb20-204;Zbtb20-215;Zbtb20-201;Zbtb20-203;Zbtb20-214;Zbtb20-213;Zbtb20-219;Zbtb20-216;Zbtb20-208;Zbtb20-207;Zbtb20-220;Zbtb20-206;Zbtb20-221;Zbtb20-202;Zbtb20-205,Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,98,56490,ENSMUSG00000022708,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3049,cg10122105,0.00000967,0.00000242,3.988123784,0.0000831,gain,ns,0.00000366,0.00000412,0.88995233,0.374181598,pos,ns,0.00084565,0.001206318,0.70101736,0.483818042,pos,ns,0.31531794,-0.00004,0.0000415,-0.963882049,0.335856348,neg,ns,0.071119703,Pou3f2,Pou3f2_Exon,4,22486986,22487035,22486986,22486987,50,-,CGAGGGCTTGGGGCATTTGAGGAAATGGCTCTCCAGAGCCCCCTTGACGC,"Exon (Pou3f2-201/Pou3f2, exon 1 of 1)",4,22482780,22488366,5587,2,Pou3f2-201,1331,Pou3f2-201,Pou3f2,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,18,18992,ENSMUSG00000095139,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
17582,cg12446925,0.000135313,0.0000189,7.168295795,5.59E-12,gain,yes,-0.0000285,0.0000321,-0.889703504,0.374315016,neg,ns,0.026824117,0.009395064,2.855128873,0.004592041,pos,ns,2.337994224,-0.000962268,0.000323095,-2.978276434,0.003127527,neg,ns,0.303301332,Spi1,Spi1_Exon,2,91115215,91115264,91115215,91115216,50,-,CGCTGGGGCATCCAGAAGGGCAACCGCAAGAAGATGACCTACCAGAAGAT,"Exon (Spi1-201/Spi1, exon 5 of 5)",2,91096096,91115756,19661,1,Spi1-201,19119,Mybpc3-201;Mybpc3-202;Mybpc3-203;Spi1-204;Spi1-201;Spi1-203,Mybpc3;Mybpc3;Mybpc3;Spi1;Spi1;Spi1,-2880;-2880;-2880;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,7,20375,ENSMUSG00000002111,conserved gene but different region,2,91115186,91115299,114,*,114,12,0.649122807,1.002197802,0.105263158,9.79E-10,CpGisland,TRUE,U2,Pr-W
13189,cg00591406,0.00000737,0.00000192,3.843608793,0.000147102,gain,ns,-0.0000029,0.00000326,-0.889585415,0.374378345,neg,ns,-0.000902193,0.000954423,-0.945275949,0.345254195,neg,ns,0.461861035,0.0000466,0.0000328,1.421012911,0.15631811,pos,ns,0.066831233,Ikzf2,Ikzf2_fiveUTR,1,69685698,69685747,69685746,69685747,50,+,GAAATTGTCCTTTGATTAAAAAAGATTCATCACCATTTCCAGCTCTGTCG,Promoter (<=1kb),1,69531214,69685821,154608,2,Ikzf2-201,74,Ikzf2-201;Ikzf2-207;Ikzf2-202;Ikzf2-204;Ikzf2-208;Ikzf2-209;Ikzf2-206;Ikzf2-203;Ikzf2-205,Ikzf2;Ikzf2;Ikzf2;Ikzf2;Ikzf2;Ikzf2;Ikzf2;Ikzf2;Ikzf2,0;0;0;0;0;0;-398;-1162;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,14,22779,ENSMUSG00000025997,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
7228,cg07827566,-0.00000271,0.00000563,-0.481186356,0.630723517,loss,ns,0.00000851,0.00000956,0.889556962,0.374393605,pos,ns,-0.003556972,0.002802008,-1.269436577,0.205237569,neg,ns,0.687743139,0.0000154,0.0000964,0.159756053,0.873177284,pos,ns,0.835312495,Gria3,Gria3_threeUTR,X,41672275,41672324,41672275,41672276,50,+,CGGAGGTCTGGGGCTGGCCATGATGGTGGCTTTGATAGAATTCTGTTACA,3' UTR,20,41401128,41676585,275458,1,Gria3-202,271147,Gria3-202;Gria3-201;Gria3-208;Gria3-206;Gria3-209,Gria3;Gria3;Gria3;Gria3;Gria3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,26,53623,ENSMUSG00000001986,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5768,cg10022358,0.000019,0.0000133,1.429734818,0.153800157,gain,ns,0.0000201,0.0000226,0.889532234,0.374406867,pos,ns,0.008258787,0.006630064,1.245657171,0.213830928,pos,ns,0.669929479,-0.000204486,0.000228007,-0.896840983,0.370499709,neg,ns,0.044764437,Sox2,Sox2_Intron,3,34662040,34662089,34662088,34662089,50,+,CGCTTTATTATTTAATAACGTCAAACGCTTCGTTGGATTGGCCCCGACCG,"Intron (Sox2ot-203/Sox2ot-203, intron 3 of 3)",3,34650405,34652461,2057,1,Sox2-201,11635,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,34,62,20674,ENSMUSG00000074637,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
19181,cg25849440,-0.0000154,0.0000038,-4.042976526,0.0000666,loss,ns,-0.00000574,0.00000646,-0.88951318,0.374417086,neg,ns,0.001108925,0.001891296,0.586330715,0.558079974,pos,ns,0.253303561,-0.000158828,0.000065,-2.441946159,0.015166957,neg,ns,0.791990731,Thra,Thra_Exon,11,98764397,98764446,98764445,98764446,50,-,CTGATGAAGGTGACTGACCTCCGCATGATCGGGGCCTGCCACGCCAGCCG,"Exon (Thra-201/Thra, exon 9 of 10)",11,98741811,98769006,27196,1,Thra-201,22586,Nr1d1-201;Nr1d1-202;Thra-201;Thra-202;Thra-203,Nr1d1;Nr1d1;Thra;Thra;Thra,0;5980;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,13,18,21833,ENSMUSG00000058756,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12190,cg23028216,-0.00000538,0.00000306,-1.753694499,0.080471099,loss,ns,-0.00000463,0.00000521,-0.889490404,0.374429302,neg,ns,-0.000749048,0.001525468,-0.491028148,0.623753966,neg,ns,0.20498668,0.0000153,0.0000525,0.291315883,0.771004565,pos,ns,0.917129663,Aopep,Aopep_threeUTR,13,63300695,63300744,63300695,63300696,50,-,CGATGACCTCTCTAACAAGGTGCAGAGCTTAGCTGATTGGTGAACAGTGA,3' UTR,13,63015167,63302284,287118,1,Aopep-201,285528,Aopep-202;Aopep-201;Aopep-208;Aopep-219;Aopep-224;Aopep-227;Aopep-203;Aopep-216;Aopep-209;Aopep-210;Aopep-228;Aopep-213;Aopep-225;Aopep-226;Aopep-221;Aopep-214;Aopep-205;Aopep-222;Aopep-211;Fancc-218;Fancc-201,Aopep;Aopep;Aopep;Aopep;Aopep;Aopep;Aopep;Aopep;Aopep;Aopep;Aopep;Aopep;Aopep;Aopep;Aopep;Aopep;Aopep;Aopep;Aopep;Fancc;Fancc,0;0;0;0;0;0;0;0;0;0;0;0;0;0;21736;18788;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,5,7,72061,ENSMUSG00000021458,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24105,cg15045484,-0.0000122,0.0000026,-4.697940878,0.00000396,loss,ns,0.00000393,0.00000442,0.88935075,0.37450421,pos,ns,0.001017289,0.001295427,0.785292484,0.432881855,pos,ns,0.363630618,-0.0000696,0.0000445,-1.563355636,0.1189892,neg,ns,0.938230972,Fnbp1l,Fnbp1l_Exon,3,122556435,122556484,122556483,122556484,50,-,AAGGAATTCTGGGCTTCCCTGTTTTTATTTCATTCATACAATAATGCACG,"Exon (Fnbp1l-204/Fnbp1l, exon 5 of 12)",3,122538719,122563881,25163,2,Fnbp1l-204,7397,Fnbp1l-204;Fnbp1l-201;Fnbp1l-203;Fnbp1l-206;Fnbp1l-205;Fnbp1l-202,Fnbp1l;Fnbp1l;Fnbp1l;Fnbp1l;Fnbp1l;Fnbp1l,0;0;0;0;0;2760,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,214459,ENSMUSG00000039735,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27472,cg10753260,-0.000000183,0.00000564,-0.032416063,0.974161114,loss,ns,-0.00000852,0.00000958,-0.889344018,0.374507821,neg,ns,0.001498387,0.002806139,0.533967674,0.593746583,pos,ns,0.226398877,-0.00000356,0.0000965,-0.036937522,0.970558596,neg,ns,0.924851325,Pbx1,Pbx1_Intron,1,168327961,168328010,168328009,168328010,50,+,AAATATATTACTCCGCAGATTCCGCAAATCTCTCTTAATATGCAAATGCG,"Intron (Pbx1-208/Pbx1, intron 2 of 7)",1,168119364,168432270,312907,2,Pbx1-208,104260,Pbx1-208;Pbx1-205;Pbx1-206;Pbx1-201;Pbx1-202;Pbx1-204,Pbx1;Pbx1;Pbx1;Pbx1;Pbx1;Pbx1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,84,18514,ENSMUSG00000052534,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8969,cg08491919,0.0000738,0.0000127,5.818797128,1.48E-08,gain,yes,-0.0000192,0.0000215,-0.889289036,0.374537316,neg,ns,-0.00341763,0.006312945,-0.541368568,0.588642407,neg,ns,0.230148454,-0.00000636,0.000217102,-0.029300425,0.976643842,neg,ns,0.503777754,Ttbk1,Ttbk1_threeUTR,17,46442452,46442501,46442500,46442501,50,+,GGTCCACAGGCTTTTTAATGGTGTGATGGCTACTTCCCTTCCGAGACCCG,3' UTR,17,46442448,46487675,45228,2,Ttbk1-201,45174,Gm5093-201;Slc22a7-201;Slc22a7-203;Slc22a7-202;Ttbk1-201,Gm5093;Slc22a7;Slc22a7;Slc22a7;Ttbk1,-2355;-3995;-4823;-4058;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,7,106763,ENSMUSG00000015599,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
7134,cg12799992,0.00000987,0.0000136,0.723054213,0.470191752,gain,ns,0.0000206,0.0000232,0.889214695,0.374577197,pos,ns,-0.012213108,0.006792315,-1.798077435,0.073137596,neg,ns,1.135859319,0.000797174,0.000233587,3.412748718,0.000728525,pos,ns,0.382222617,Gm5973,Gm5973_Intergenic_upstream,1,41275374,41275423,41275374,41275375,50,+,CGCTCCTGCTATTAATTAATCTCACAAAGGGGGCTCATTTCCTGGCATTC,Distal Intergenic,1,40863737,40864232,496,2,Gm5973-201,-411142,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,18,18,546733,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17369,cg03711182,0.0000133,0.00000312,4.277915382,0.0000252,gain,ns,0.00000471,0.0000053,0.889206298,0.374581702,pos,ns,0.002806409,0.001551897,1.808373162,0.071517346,pos,ns,1.145588612,-0.0000143,0.0000534,-0.26723252,0.789467833,neg,ns,0.033653327,Rasgrf1,Rasgrf1_Promoter,9,89908852,89908901,89908852,89908853,50,-,CGGAAAATCTATCATTAAGGTATCATTGCGCCAGCGCAGCTATTTGAAGG,Promoter (1-2kb),9,89909908,89915847,5940,1,Rasgrf1-203,-1056,Rasgrf1-203;Rasgrf1-201;Rasgrf1-202;Rasgrf1-204,Rasgrf1;Rasgrf1;Rasgrf1;Rasgrf1,0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,2,19417,ENSMUSG00000032356,conserved gene and region,9,89908632,89908936,305,*,305,33,0.619672131,1.127857463,0.108196721,1.30E-26,CpGisland,TRUE,U3,Pr-B
5534,cg17951235,-0.0000729,0.0000112,-6.524369635,2.78E-10,loss,yes,0.0000169,0.000019,0.889113384,0.374631551,pos,ns,-0.004987473,0.005564664,-0.896275653,0.370801016,neg,ns,0.430859084,0.000159766,0.000191368,0.834860504,0.404439174,pos,ns,0.846800295,Hdac9,Hdac9_Intron,12,34215793,34215842,34215793,34215794,50,+,CGAGCATGCCCTGGAGACTCCAGATGAGCAGTCATTGAGAAAGCCCAGTC,"Intron (Hdac9-205/Hdac9, intron 18 of 24)",12,34047580,34528328,480749,2,Hdac9-205,312486,Hdac9-205;Hdac9-204;Hdac9-206;Hdac9-210;Hdac9-207,Hdac9;Hdac9;Hdac9;Hdac9;Hdac9,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,19,31,79221,ENSMUSG00000004698,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13797,cg03422175,0.000021,0.00000261,8.052676795,1.76E-14,gain,yes,0.00000395,0.00000444,0.888811841,0.374793361,pos,ns,0.004359839,0.001300376,3.352753758,0.000899297,pos,ns,3.046096644,0.0000426,0.0000447,0.951643379,0.342019248,pos,ns,0.056219386,Ppm1a,Ppm1a_Intergenic_downstream,12,72831988,72832037,72832036,72832037,50,-,GTGTTACTAAACATAACAGATGGCAGCTGTCTGCGGCTATATAGGGCGCG,Distal Intergenic,12,72791125,72793010,1886,1,Ppm1a-206,40912,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,19042,ENSMUSG00000021096,mapped to different genes,12,72832034,72832216,183,*,183,23,0.732240437,0.947972973,0.12568306,2.62E-20,CpGisland,TRUE,U3,Pr-B
8638,cg21303286,0.0000712,0.0000134,5.306688956,0.000000213,gain,yes,-0.0000203,0.0000228,-0.888801593,0.37479886,neg,ns,0.018551434,0.006675463,2.779048179,0.00578461,pos,ns,2.237725886,-0.000202967,0.000229569,-0.884123505,0.377314721,neg,ns,0.449077573,Btrc,Btrc_Intron,19,45476261,45476310,45476261,45476262,50,+,CGCTCAGAGATCGGCAGGAGTCCTACTTGCCTAATCTTACCGGTGGGAGC,"Intron (Btrc-204/Btrc, intron 1 of 2)",19,45363734,45507736,144003,1,Btrc-204,112527,Btrc-204;Btrc-201;Btrc-210;Btrc-202;Btrc-203;Btrc-209,Btrc;Btrc;Btrc;Btrc;Btrc;Btrc,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,63,98,12234,ENSMUSG00000025217,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
9918,cg27526720,-0.00000149,0.00000209,-0.71028698,0.478060172,loss,ns,0.00000316,0.00000355,0.888214016,0.375114284,pos,ns,0.001868871,0.001041479,1.794440658,0.073717083,pos,ns,1.132431857,-0.0000912,0.0000358,-2.545900751,0.011383403,neg,ns,0.947591953,Gm46574,Gm46574_Intergenic_upstream,17,51584662,51584711,51584710,51584711,50,-,TCTTTGTTGTGCATTCAGCTTTTTAATGTGTTCAAAGAGCAGCTCTGACG,Distal Intergenic,17,51484292,51484721,430,2,Gm46574-201,-99990,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,19,108168316,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19697,cg21479658,-0.0000258,0.00000399,-6.473987713,3.73E-10,loss,yes,-0.00000602,0.00000678,-0.888134114,0.37515719,neg,ns,-0.004350552,0.001984875,-2.19185236,0.029133674,neg,ns,1.535604737,0.000135231,0.0000683,1.981132512,0.048459792,pos,ns,0.933438142,Stag1,Stag1_Exon,9,100757692,100757741,100757692,100757693,50,+,CGTGGTGGATGACTGGATTGAATCATATAAACAAGACAGGGACATCGCAC,"Exon (Stag1-206/Stag1, exon 5 of 34)",9,100643448,100796791,153344,1,Stag1-213,114244,Stag1-213;Stag1-206;Stag1-201;Stag1-208;Stag1-216;Stag1-203;Stag1-207,Stag1;Stag1;Stag1;Stag1;Stag1;Stag1;Stag1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,15,20842,ENSMUSG00000037286,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9097,cg01337511,-0.0000154,0.00000518,-2.975313469,0.003157038,loss,ns,0.00000781,0.0000088,0.887734737,0.375371693,pos,ns,-0.001431283,0.002578323,-0.555121711,0.579211747,neg,ns,0.237162639,-0.0000597,0.0000887,-0.672935996,0.501489335,neg,ns,0.909859331,Gm4791,Gm4791_Intergenic_upstream,9,46864750,46864799,46864798,46864799,50,+,TTTCCATATAAATAATTCACGGGAAATTATTAGAGTGAGGACATCGCCCG,Distal Intergenic,9,46998741,47003860,5120,1,Gm4791-201,-133942,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,9,18,215467,ENSMUSG00000094893,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7832,cg24653269,-0.000139636,0.0000149,-9.343720925,1.89E-18,loss,yes,-0.0000225,0.0000254,-0.887651334,0.375416498,neg,ns,0.006092362,0.007437969,0.819089533,0.413364572,pos,ns,0.383666748,-0.000716446,0.000255791,-2.800900981,0.005416163,neg,ns,0.750888769,Bcl9l,Bcl9l_Intron,9,44493203,44493252,44493251,44493252,50,+,CTTGGGCAGGCTGGGGCTATTTTTGGGATCGGGCTGGGGCTCTGGGGCCG,"Intron (Bcl9l-206/Bcl9l, intron 1 of 7)",9,44482825,44510422,27598,1,Bcl9l-206,10378,Bcl9l-206;Bcl9l-202;Bcl9l-203,Bcl9l;Bcl9l;Bcl9l,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,9,80288,ENSMUSG00000063382,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
853,cg20483635,-0.00000986,0.00000228,-4.333884273,0.0000198,loss,ns,-0.00000343,0.00000387,-0.887634269,0.375425665,neg,ns,0.000827205,0.001132728,0.730276336,0.4657728,pos,ns,0.331825877,-0.0000189,0.000039,-0.4861439,0.627208611,neg,ns,0.966346987,Dmtf1,Dmtf1_threeUTR,5,9127968,9128017,9128016,9128017,50,+,ACATCCTTATGGTTTGCAATTTGCCTTTTGATGGTCCACCATTTACTTCG,3' UTR,5,9118801,9161776,42976,2,Dmtf1-201,33759,Dmtf1-201;Dmtf1-209;Dmtf1-202;Dmtf1-208;Dmtf1-214;Dmtf1-212;Dmtf1-213;Dmtf1-204;Dmtf1-207;Dmtf1-210;Dmtf1-215;Dmtf1-216;Dmtf1-211;Dmtf1-205;Tmem243-202,Dmtf1;Dmtf1;Dmtf1;Dmtf1;Dmtf1;Dmtf1;Dmtf1;Dmtf1;Dmtf1;Dmtf1;Dmtf1;Dmtf1;Dmtf1;Dmtf1;Tmem243,0;0;0;0;0;0;0;0;0;-1391;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,11,23857,ENSMUSG00000042508,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13924,cg00301020,-0.0000456,0.00000966,-4.717286449,0.00000362,loss,ns,0.0000146,0.0000164,0.887551623,0.375470068,pos,ns,0.008724209,0.004808007,1.814516774,0.070564679,pos,ns,1.151412629,-0.000873941,0.000165347,-5.285495311,0.000000237,neg,yes,0.802672945,Gm11488,Gm11488_Intergenic_downstream,4,73488837,73488886,73488885,73488886,50,+,AAACACATCTGCCAACATAAAGTATTGGAGCAATCACAGCTCAGTGAACG,Distal Intergenic,4,73497615,73498477,863,2,Gm11488-201,9591,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,623115,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23882,cg05119607,0.00000354,0.00000462,0.766852894,0.443752585,gain,ns,-0.00000696,0.00000785,-0.887455473,0.375521729,neg,ns,-0.0000327,0.002298966,-0.01421825,0.988665006,neg,ns,0.004950837,-0.0000402,0.0000791,-0.508775599,0.611271427,neg,ns,0.750400988,Rims3,Rims3_Exon,4,120891319,120891368,120891319,120891320,50,+,CGCATGGACCACAAGTGCTTCATGGGCATGGCCCAGATCATGCTGGACGA,"Exon (Rims3-201/Rims3, exon 8 of 8)",4,120854819,120896579,41761,1,Rims3-201,36500,Rims3-201;Rims3-202;Rims3-204,Rims3;Rims3;Rims3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,242662,ENSMUSG00000032890,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5979,cg27650171,-0.000000592,0.00000144,-0.411407248,0.681058219,loss,ns,-0.00000217,0.00000244,-0.887431394,0.375534667,neg,ns,0.00094187,0.000715906,1.31563263,0.189269528,pos,ns,0.722919301,-0.0000407,0.0000246,-1.651929271,0.099561473,neg,ns,0.02996313,Gtf2h4,Gtf2h4_threeUTR,17,35667962,35668011,35668010,35668011,50,+,CTCAAAGTCCACTTGCGACAGGAACTGGTTATACAGGACACCTGGGGTCG,3' UTR,17,35667730,35673739,6010,2,Gtf2h4-201,5728,Gtf2h4-201;Gtf2h4-212;Gtf2h4-205;Gtf2h4-207;Gtf2h4-208;Gtf2h4-211;Gtf2h4-204;Gtf2h4-209;Gtf2h4-202;Gtf2h4-210;Gtf2h4-206;Gtf2h4-203;Vars2-201;Vars2-206;Vars2-208;Vars2-203;Vars2-204;Vars2-211;Vars2-205,Gtf2h4;Gtf2h4;Gtf2h4;Gtf2h4;Gtf2h4;Gtf2h4;Gtf2h4;Gtf2h4;Gtf2h4;Gtf2h4;Gtf2h4;Gtf2h4;Vars2;Vars2;Vars2;Vars2;Vars2;Vars2;Vars2,0;0;0;0;0;0;0;0;0;0;0;0;-370;-1699;-4478;-4936;-1229;-422;-413,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,3,14885,ENSMUSG00000001524,conserved gene but different region,17,35667767,35668011,245,*,245,20,0.624489796,0.838179952,0.081632653,8.91E-14,CpGisland,TRUE,NA,NRS
2462,cg26356517,-0.0000493,0.00000892,-5.520477385,7.15E-08,loss,yes,0.0000135,0.0000152,0.88735257,0.375577024,pos,ns,-0.010638981,0.004440993,-2.39563098,0.017184616,neg,ns,1.764860171,0.000139121,0.000152725,0.91092061,0.363044965,pos,ns,0.87245805,Gm4849,Gm4849_Intergenic_downstream,1,19674114,19674163,19674114,19674115,50,-,CGATAAAGTGGTGTAACAAATTTTGTGTTTGAATGATAAAATCAGCAATC,Distal Intergenic,1,19330939,19333184,2246,1,Gm4849-201,343224,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,10,226901,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16580,cg05299242,-0.00000534,0.00000434,-1.232292719,0.218773567,loss,ns,-0.00000654,0.00000737,-0.887323664,0.375592558,neg,ns,-0.003119634,0.002158688,-1.44515283,0.149425041,neg,ns,0.825576617,0.000149628,0.0000742,2.015547834,0.044709929,pos,ns,0.911398859,Gm5231,Gm5231_Intergenic_downstream,17,85530427,85530476,85530427,85530428,50,-,CGTAAGCATATTATCTGAGACACAGATGTCTTCTATGACCCCACACGACA,Distal Intergenic,17,85541625,85542703,1079,2,Gm5231-201,12276,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,11,383282,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25301,cg00896157,-0.00000052,0.00000198,-0.262076861,0.793436245,loss,ns,-0.00000299,0.00000337,-0.887303938,0.375603158,neg,ns,-0.003061561,0.000987832,-3.099273852,0.002117854,neg,ns,2.674103905,0.0000928,0.000034,2.730986498,0.006676028,pos,ns,0.931819348,Lrp6,Lrp6_Exon,6,134541996,134542045,134542044,134542045,50,+,ATCAACCAATCGCAAGTCCCGTCTGTTTGCATAAAGCAACAAAGGGGCCG,"Exon (Lrp6-201/Lrp6, exon 2 of 23)",6,134446476,134566913,120438,2,Lrp6-201,24868,Lrp6-201;Lrp6-203;Lrp6-205,Lrp6;Lrp6;Lrp6,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,11,16974,ENSMUSG00000030201,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20219,cg15304357,0.0000892,0.0000096,9.295816737,2.69E-18,gain,yes,-0.0000145,0.0000163,-0.887264083,0.375624576,neg,ns,0.007558401,0.004776349,1.582464253,0.114563286,pos,ns,0.940954536,-0.0000603,0.000164258,-0.367056983,0.713826948,neg,ns,0.110906493,Hoxc11,Hoxc11_Promoter,15,102954367,102954416,102954367,102954368,50,+,CGAAGTGCTCCGAACTGATATATGACAATATCTACTTTGGATCACGTGCT,Promoter (<=1kb),15,102954427,102957708,3282,1,Hoxc11-201,-11,Hoxc11-201,Hoxc11,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,12,24,109663,ENSMUSG00000001656,mapped to different genes,15,102954221,102954599,379,*,379,28,0.519788918,1.094020619,0.073878628,6.96E-18,CpGisland,TRUE,U13,Hc-P
24664,cg26575155,-0.00000316,0.00000154,-2.05487916,0.040728448,loss,ns,-0.00000232,0.00000261,-0.887251734,0.375631213,neg,ns,-0.001267229,0.000764889,-1.656748021,0.098582146,neg,ns,1.006201733,0.0000147,0.0000263,0.559916832,0.575940526,pos,ns,0.958755015,Gm42715,Gm42715_Exon,7,127519592,127519641,127519592,127519593,50,+,CGGCATGACAGGCAGCAATCCTGTGTCCCCTGCCTCATCCAGTTCCCCAG,Promoter (<=1kb),7,127519584,127567054,47471,1,Gm42715-201,8,Gm42715-201;Srcap-203;Srcap-210;Srcap-211;Srcap-202;Srcap-209;Srcap-212;Srcap-204;Srcap-201;Srcap-208;Srcap-207;Srcap-205;Srcap-206;Srcap-214,Gm42715;Srcap;Srcap;Srcap;Srcap;Srcap;Srcap;Srcap;Srcap;Srcap;Srcap;Srcap;Srcap;Srcap,0;0;0;0;0;7480;7291;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,7,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21508,cg22577350,-0.0000322,0.0000108,-2.972615301,0.003184132,loss,ns,-0.0000163,0.0000184,-0.88705052,0.375739359,neg,ns,-0.008737641,0.005384072,-1.622868592,0.105633956,neg,ns,0.976196457,-0.000251705,0.000185158,-1.359407518,0.175005514,neg,ns,0.654270216,Gm9864,Gm9864_Intergenic_upstream,2,108023454,108023503,108023454,108023455,50,-,CGGTTGTGTGAAAGTATTTTTAGAGACTAATTTCTACCCAGCTGTGTCAT,Distal Intergenic,2,107595630,107600539,4910,2,Gm9864-201,-422964,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8125,cg07706844,0.00000793,0.00000251,3.158864893,0.001739991,gain,ns,-0.00000378,0.00000427,-0.886980555,0.375776967,neg,ns,-0.000331185,0.001249938,-0.264961503,0.79121521,neg,ns,0.101705373,0.0000134,0.000043,0.312083559,0.755186825,pos,ns,0.064028202,Pax2,Pax2_Exon,19,44760834,44760883,44760882,44760883,50,-,CTGTGTGTGGGGTGTTGTGTTTTTTTCTTGTCTCTCCCCAGCAGGGCACG,"Exon (Pax2-203/Pax2, exon 2 of 10)",19,44756045,44837851,81807,1,Pax2-203,4789,Pax2-203;Pax2-201;Pax2-202,Pax2;Pax2;Pax2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,16,166,18504,ENSMUSG00000004231,conserved gene and region,19,44760882,44761007,126,*,126,11,0.706349206,0.715170279,0.087301587,0.000000046,CpGisland,TRUE,U13,Hc-P
6374,cg01695075,0.000063,0.00000672,9.37659508,1.49E-18,gain,yes,0.0000101,0.0000114,0.886907852,0.37581605,pos,ns,0.01464508,0.003345683,4.377306724,0.0000164,pos,ns,4.783960489,-0.000170449,0.000115058,-1.481424319,0.139509246,neg,ns,0.114828435,Pknox2,Pknox2_Intron,9,37054228,37054277,37054276,37054277,50,-,GGGGAATTGTTCTGAGAAAGTGGCCCGTTGGCTGGTTGCTATGGAAACCG,"Intron (Pknox2-207/Pknox2, intron 1 of 10)",9,36890982,37083309,192328,2,Pknox2-207,29032,Pknox2-207;Pknox2-201;Pknox2-202;Pknox2-206;Pknox2-204;Pknox2-205;Pknox2-208;Pknox2-210;Pknox2-209;Pknox2-212;Pknox2-211,Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,47,208076,ENSMUSG00000035934,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22057,cg12604297,-0.00000534,0.00000135,-3.944785089,0.0000988,loss,ns,0.00000204,0.0000023,0.886619761,0.375970943,pos,ns,0.001557934,0.000673226,2.314130508,0.021314087,pos,ns,1.671333265,-0.000044,0.0000232,-1.900107306,0.058346735,neg,ns,0.962550448,Klhl18,Klhl18_threeUTR,9,110432501,110432550,110432501,110432502,50,+,CGTAGATCTGCCCATCCAGCACGACTGTCCCCATGGCACTGAAACAGACA,Promoter (<=1kb),9,110430683,110432545,1863,2,Klhl18-206,0,Klhl18-201;Klhl18-205;Klhl18-202;Klhl18-203;Klhl18-206;Klhl18-207;Klhl18-204,Klhl18;Klhl18;Klhl18;Klhl18;Klhl18;Klhl18;Klhl18,0;0;0;0;0;22851;14701,TRUE,FALSE,TRUE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,2,270201,ENSMUSG00000054792,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19323,cg17792638,-0.0000187,0.00000795,-2.351490977,0.019324015,loss,ns,0.000012,0.0000135,0.886508695,0.376030669,pos,ns,0.005429814,0.003957072,1.372179755,0.170999563,pos,ns,0.767005,-0.000267554,0.000136083,-1.966102871,0.050178823,neg,ns,0.666338766,Atp2b1,Atp2b1_Exon,10,99001372,99001421,99001372,99001373,50,-,CGGGATTATCAGGATGTTAGAAATGAAATACCAGAAGAAGCACTGTACAA,"Exon (Atp2b1-201/Atp2b1, exon 11 of 21)",10,98915152,99026143,110992,1,Atp2b1-201,86220,Atp2b1-201;Atp2b1-208;Atp2b1-206,Atp2b1;Atp2b1;Atp2b1,0;85900;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,7,67972,ENSMUSG00000019943,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26839,cg20708331,-0.000000225,0.00000182,-0.12358552,0.901723547,loss,ns,0.00000274,0.00000309,0.886428409,0.376073846,pos,ns,0.003121143,0.000906228,3.444104244,0.000651819,pos,ns,3.185872968,-0.0000806,0.0000312,-2.587223429,0.010130365,neg,ns,0.058767872,Lamc1,Lamc1_Exon,1,153332122,153332171,153332170,153332171,50,+,GCTTACCCAGGTGCAGCGTGAGGTTGATGGAGCTGGGGTACTGCACCCCG,Promoter (<=1kb),1,153218922,153332786,113865,2,Lamc1-201,615,Lamc1-201,Lamc1,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,6,226519,ENSMUSG00000026478,conserved gene and region,1,153332004,153333079,1076,*,1076,114,0.720260223,0.822001528,0.105947955,2.02E-89,CpGisland,TRUE,U1,Pr-A
1686,cg22032487,-0.00000021,0.000000888,-0.236368801,0.813302604,loss,ns,0.00000134,0.00000151,0.886387407,0.376095898,pos,ns,0.000170734,0.000442028,0.38625244,0.699574684,pos,ns,0.155165915,-0.00000644,0.0000152,-0.423840914,0.671975777,neg,ns,0.972597025,Tle4,Tle4_Exon,19,14544783,14544832,14544783,14544784,50,-,CGTACCCCAATGATGGCGTTCAGTTCTGCCATGGTCACCTGCTTGGCCCG,"Exon (Tle4-201/Tle4, exon 6 of 20)",19,14448150,14598051,149902,2,Tle4-201,53219,Tle4-201;Tle4-202;Tle4-203,Tle4;Tle4;Tle4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,29,21888,ENSMUSG00000024642,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5554,cg08979093,0.00000113,0.0000024,0.469412569,0.639104753,gain,ns,-0.00000361,0.00000408,-0.88624709,0.376171369,neg,ns,-0.001007777,0.001194895,-0.843402357,0.399653757,neg,ns,0.3983161,0.0000674,0.0000411,1.640490613,0.101917421,pos,ns,0.938661569,Hdac9,Hdac9_Exon,12,34248391,34248440,34248391,34248392,50,+,CGGACGAGTGTAGCTCATTCCAAATGGTGTCACTGTCCACCTGAGCAAAC,"Exon (Hdac9-205/Hdac9, exon 16 of 25)",12,34047580,34528328,480749,2,Hdac9-205,279888,Hdac9-205;Hdac9-204;Hdac9-206;Hdac9-210;Hdac9-207,Hdac9;Hdac9;Hdac9;Hdac9;Hdac9,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,31,79221,ENSMUSG00000004698,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
675,cg13329717,-0.00000178,0.0000017,-1.046175919,0.296294852,loss,ns,0.00000257,0.00000289,0.886210075,0.37619128,pos,ns,0.001554425,0.000848114,1.832802119,0.067790962,pos,ns,1.168828204,-0.0000443,0.0000292,-1.51991478,0.129551642,neg,ns,0.075147495,Wac,Wac_Exon,18,7869588,7869637,7869588,7869589,50,+,CGAGGAAACAGCAGAGACTCAGTGATGGGTAAATTGTCTTTTCGTTTCGG,Promoter (<=1kb),18,7868832,7926505,57674,1,Wac-214,756,Wac-214;Wac-206;Wac-201;Wac-215;Wac-213;Wac-207;Wac-203;Wac-202;Wac-216;Wac-210;Wac-205;Wac-211;Wac-204,Wac;Wac;Wac;Wac;Wac;Wac;Wac;Wac;Wac;Wac;Wac;Wac;Wac,0;0;0;0;0;0;0;0;0;0;0;-100;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,225131,ENSMUSG00000024283,conserved gene but different region,18,7868436,7870037,1602,*,1602,202,0.707240949,1.011483762,0.126092385,3.57E-175,CpGisland,TRUE,U1,Pr-A
1122,cg05103590,-0.00000975,0.00000273,-3.56926245,0.0004147,loss,ns,-0.00000411,0.00000464,-0.8861935,0.376200196,neg,ns,0.000474244,0.001360144,0.348671695,0.727572481,pos,ns,0.138123736,0.000000189,0.0000468,0.004036106,0.996782258,pos,ns,0.912839059,Ikzf1,Ikzf1_Intron,11,11699707,11699756,11699707,11699708,50,-,CGCGTGTCACCAAGCTGACTCAAGGTTCATCGATGCATGCTCAGTAAATT,"Intron (Ikzf1-206/Ikzf1, intron 1 of 2)",11,11685003,11707800,22798,1,Ikzf1-206,14704,Ikzf1-206;Ikzf1-205;Ikzf1-203;Ikzf1-204;Ikzf1-202;Ikzf1-201,Ikzf1;Ikzf1;Ikzf1;Ikzf1;Ikzf1;Ikzf1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,15,22778,ENSMUSG00000018654,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9056,cg25337341,-0.0000108,0.00000802,-1.353000946,0.17704122,loss,ns,-0.0000121,0.0000136,-0.886173615,0.376210893,neg,ns,-0.011370689,0.00399112,-2.848997368,0.004679134,neg,ns,2.32983455,0.0001284,0.000137254,0.935489826,0.350264077,pos,ns,0.776538,Gm8863,Gm8863_Promoter,9,46723960,46724009,46724008,46724009,50,+,GCTTCTTTCCCTGAAGAATATCTCTAATCGCCCCGCCTGATTGGGTCTCG,Promoter (9-10kb),9,46713233,46714158,926,2,Gm8863-201,-9802,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,20,667890,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2373,cg12560988,0.0000761,0.0000143,5.316009292,0.000000203,gain,yes,0.0000216,0.0000243,0.885996994,0.376305911,pos,ns,0.00509858,0.007127818,0.715307245,0.474957593,pos,ns,0.323345165,0.000263518,0.000245125,1.075036511,0.283194384,pos,ns,0.205925668,Tfap2b,Tfap2b_Intron,1,19217392,19217441,19217392,19217393,50,+,CGCTTCCGCATGCAGTCCTAATTAAATCTTTACGATCCTCCCTGTGACGA,"Intron (Tfap2b-201/Tfap2b, intron 2 of 6)",1,19208914,19238576,29663,1,Tfap2b-201,8478,Tfap2b-201;Tfap2b-204;Tfap2b-202;Tfap2b-205;Tfap2b-203,Tfap2b;Tfap2b;Tfap2b;Tfap2b;Tfap2b,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,40,21419,ENSMUSG00000025927,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
21738,cg22685742,-0.00000177,0.00000173,-1.023001292,0.307104873,loss,ns,0.0000026,0.00000294,0.885977963,0.37631615,pos,ns,0.000579256,0.000860726,0.672985293,0.501458015,pos,ns,0.299765423,0.000000675,0.0000296,0.022809256,0.9818171,pos,ns,0.956536089,Zfhx3,Zfhx3_Intron,8,108942836,108942885,108942884,108942885,50,-,CATCTGAGTTTTTCTAATTAAAGTGTATGAAAACAATTACTGATCCGTCG,"Intron (Zfhx3-204/Zfhx3, intron 13 of 15)",8,107942644,108961630,1018987,1,Zfhx3-204,1000192,Zfhx3-204;Zfhx3-201,Zfhx3;Zfhx3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,114,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2266,cg16566272,0.0000101,0.00000194,5.220731848,0.000000327,gain,yes,-0.00000293,0.0000033,-0.885919784,0.376347453,neg,ns,0.0000816,0.000967603,0.084313408,0.932861674,pos,ns,0.030182749,-0.00000298,0.0000333,-0.08953791,0.928712246,neg,ns,0.054595452,Meis1,Meis1_Intergenic_downstream,11,18878286,18878335,18878286,18878287,50,+,CGAGTGCAATAAGGCGTGAGGGGGAACTAATCTTCCCATTTAAATGTTTG,Downstream (1-2kb),11,18880668,19012002,131335,2,Meis1-203,133667,Meis1-206;Meis1-202;Meis1-209;Meis1-201;Meis1-203;Meis1-208;Meis1-207,Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1,0;0;0;0;0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,17,88,17268,ENSMUSG00000020160,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
2807,cg09850687,-0.0000133,0.00000468,-2.84964172,0.004669911,loss,ns,0.00000704,0.00000794,0.885840073,0.376390343,pos,ns,-0.001284161,0.002327349,-0.551769879,0.581503552,neg,ns,0.235447628,-0.0000371,0.00008,-0.462914797,0.643750228,neg,ns,0.878259705,Pnisr,Pnisr_Exon,4,21862046,21862095,21862046,21862047,50,-,CGTGAAAAGCAGAAGAAATTGGAGAAAGAAAGAATGGAACAACAACGTTC,"Exon (Pnisr-201/Pnisr, exon 6 of 12)",4,21847583,21876475,28893,1,Pnisr-201,14463,Pnisr-201;Pnisr-213;Pnisr-202;Pnisr-211;Pnisr-203;Pnisr-206;Pnisr-208;Pnisr-205;Pnisr-209;Pnisr-212,Pnisr;Pnisr;Pnisr;Pnisr;Pnisr;Pnisr;Pnisr;Pnisr;Pnisr;Pnisr,0;0;0;0;0;13982;0;7978;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,Exon,6,10,66625,ENSMUSG00000028248,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7086,cg16572844,0.00000378,0.00000219,1.724357938,0.085640086,gain,ns,0.0000033,0.00000373,0.885736347,0.37644616,pos,ns,0.001630054,0.001091932,1.492816422,0.136502264,pos,ns,0.864860145,-0.0000315,0.0000376,-0.838720977,0.402272163,neg,ns,0.964560642,Zfpm2,Zfpm2_Intron,15,40865910,40865959,40865910,40865911,50,+,CGGATAAGGTCACAATTTCATTTAGTGACAACTTCCAACAGTAGGAACTT,"Intron (Zfpm2-202/Zfpm2, intron 3 of 3)",15,40655035,40872723,217689,1,Zfpm2-202,210875,Zfpm2-202;Zfpm2-201;Zfpm2-203,Zfpm2;Zfpm2;Zfpm2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,41,22762,ENSMUSG00000022306,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2485,cg16789563,-0.0000013,0.00000097,-1.337964689,0.181888577,loss,ns,-0.00000146,0.00000165,-0.88554528,0.37654899,neg,ns,-0.00041485,0.000482732,-0.859379347,0.390795314,neg,ns,0.408050652,0.00000994,0.0000166,0.599008319,0.549604815,pos,ns,0.028777317,Spred2,Spred2_fiveUTR,11,19924408,19924457,19924456,19924457,50,-,TACTTCCTCCTCCTGTTGGCGGCGGTGAGAATCCAATATGGAGTAAATCG,Promoter (<=1kb),11,19924442,20022577,98136,1,Spred2-201,0,Spred2-202;Spred2-201,Spred2;Spred2,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,8,13,114716,ENSMUSG00000045671,conserved gene and region,11,19924342,19924793,452,*,452,44,0.703539823,0.817763158,0.097345133,3.79E-33,CpGisland,TRUE,U1,Pr-A
11823,cg14054095,0.0000129,0.00000346,3.723916643,0.000232967,gain,ns,0.0000052,0.00000588,0.885495197,0.376575947,pos,ns,0.00648422,0.001721677,3.766223525,0.000198289,pos,ns,3.702701508,-0.000121021,0.0000592,-2.043985611,0.041799748,neg,ns,0.050810199,Rbms1,Rbms1_Intron,2,60962057,60962106,60962105,60962106,50,-,AAACACCAGCGTAAAAGTAGAAATCAGTAACCAGGTGAAGTGCCACACCG,"Intron (Rbms1-201/Rbms1, intron 1 of 13)",2,60750193,60963192,213000,2,Rbms1-201,1086,Rbms1-201,Rbms1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,4,56878,ENSMUSG00000026970,conserved gene but different region,2,60962066,60962679,614,*,614,66,0.731270358,0.806544065,0.107491857,1.67E-52,CpGisland,TRUE,NA,NRS
7921,cg00042664,0.00000222,0.0000021,1.05787728,0.290935026,gain,ns,0.00000316,0.00000357,0.885421435,0.376615652,pos,ns,0.001804953,0.001046024,1.725537462,0.085427177,pos,ns,1.068403943,-0.0000648,0.000036,-1.800416208,0.072766916,neg,ns,0.952371793,Gtdc1,Gtdc1_Intron,2,44632880,44632929,44632928,44632929,50,-,TGATATTTTTTTTATGCTGTGCTCTCTGTACAACAAATAGCTATCAGACG,"Intron (Gtdc1-203/Gtdc1, intron 6 of 10)",2,44564412,44861622,297211,2,Gtdc1-203,228693,Gtdc1-203;Gtdc1-201;Gtdc1-205;Gtdc1-210;Gtdc1-204;Gtdc1-211,Gtdc1;Gtdc1;Gtdc1;Gtdc1;Gtdc1;Gtdc1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,43,227835,ENSMUSG00000036890,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16822,cg16473444,-0.00000186,0.00000142,-1.317186208,0.188748983,loss,ns,0.00000213,0.00000241,0.885390507,0.3766323,pos,ns,0.000287521,0.000704609,0.408057771,0.683512951,pos,ns,0.165253252,-0.000000345,0.0000242,-0.014252848,0.988637426,neg,ns,0.955888956,Lrba,Lrba_Intron,3,86639127,86639176,86639127,86639128,50,+,CGTAATGTATAATTCAATGTGTGTATTCCCACTGTAACTTCTCTGAGTAA,"Intron (Lrba-202/Lrba, intron 44 of 50)",3,86224680,86746712,522033,1,Lrba-202,414447,Lrba-202;Lrba-204;Lrba-201;Lrba-206,Lrba;Lrba;Lrba;Lrba,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,45,80877,ENSMUSG00000028080,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1610,cg15769970,0.000000462,0.00000545,0.084844978,0.932439402,gain,ns,-0.00000819,0.00000925,-0.885342768,0.376657999,neg,ns,-0.00029736,0.002710864,-0.109691805,0.912724773,neg,ns,0.039660162,-0.000307189,0.0000932,-3.295082011,0.001097973,neg,ns,0.819693503,Runx1t1,Runx1t1_Exon,4,13846871,13846920,13846919,13846920,50,+,TCTGGATGCCAGCACCACCTCACCTGTTGACTCCTCAGAGCTGCTTCTCG,"Exon (Runx1t1-201/Runx1t1, exon 5 of 11)",4,13743436,13893649,150214,1,Runx1t1-201,103435,Runx1t1-201;Runx1t1-206;Runx1t1-204;Runx1t1-203;Runx1t1-202,Runx1t1;Runx1t1;Runx1t1;Runx1t1;Runx1t1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,24,12395,ENSMUSG00000006586,conserved gene and region,4,13846797,13846945,149,*,149,10,0.597315436,0.788359788,0.067114094,0.00000263,CpGisland,TRUE,U15,NS
18852,cg05010272,-0.0000189,0.00000419,-4.504699098,0.00000943,loss,ns,0.0000063,0.00000712,0.885268075,0.37669821,pos,ns,-0.001120436,0.002086169,-0.537078417,0.591598717,neg,ns,0.227972777,-0.000000941,0.0000717,-0.013114345,0.989545002,neg,ns,0.939957414,Ppip5k2,Ppip5k2_Exon,1,97716554,97716603,97716602,97716603,50,-,GTCGAGCAAATGAGATAGAAAACCTTTTAACAGCAGAACCGCGTGTGGCG,"Exon (Ppip5k2-202/Ppip5k2, exon 28 of 31)",1,97706048,97770411,64364,2,Ppip5k2-201,53808,Ppip5k2-203;Ppip5k2-201;Ppip5k2-202;Ppip5k2-205;Ppip5k2-207;Ppip5k2-206,Ppip5k2;Ppip5k2;Ppip5k2;Ppip5k2;Ppip5k2;Ppip5k2,-1405;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,10,227399,ENSMUSG00000040648,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12096,cg27649989,0.0000158,0.0000054,2.934124279,0.003594558,gain,ns,-0.00000812,0.00000918,-0.885260525,0.376702274,neg,ns,-0.00000325,0.002688087,-0.001209363,0.999035846,neg,ns,0.000418929,0.0000766,0.0000924,0.828952315,0.407769192,pos,ns,0.881429052,Gm11481,Gm11481_Intergenic_upstream,4,62856419,62856468,62856467,62856468,50,-,ATTAAGAGAAATCCTATCTTCTGCTTGTTTAACTCTGTCAGTTAAATCCG,Distal Intergenic,4,62939521,62939775,255,1,Gm11481-201,-83102,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,5,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22265,cg14052760,0.00000076,0.0000022,0.345106929,0.730248022,gain,ns,-0.00000331,0.00000374,-0.884923241,0.376883885,neg,ns,0.00031559,0.001095792,0.288002024,0.773537641,pos,ns,0.111518548,-0.0000757,0.0000377,-2.009408342,0.045360268,neg,ns,0.965155736,Srgap3,Srgap3_threeUTR,6,112741414,112741463,112741462,112741463,50,-,AGTCCTCGGAAATACAGTTTTAAAACACCAGCGACTGAATTGATATCTCG,3' UTR,6,112717971,112947266,229296,2,Srgap3-202,205803,Srgap3-202;Srgap3-203;Srgap3-204,Srgap3;Srgap3;Srgap3,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,3,259302,ENSMUSG00000030257,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21858,cg11815316,-0.0000415,0.0000115,-3.604542688,0.000364214,loss,ns,0.0000173,0.0000195,0.88491863,0.376886369,pos,ns,0.005715552,0.005723954,0.998532213,0.318800128,pos,ns,0.496481513,-0.000315492,0.000196846,-1.602730389,0.110012581,neg,ns,0.618611504,Lmo1,Lmo1_Intergenic_upstream,7,109256036,109256085,109256084,109256085,50,+,TATTCATATTTGGTTCAATAAGTGCCAACTATTAATATACATGTCTGTCG,Distal Intergenic,7,109138675,109175207,36533,2,Lmo1-202,-80829,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,34,66,109594,ENSMUSG00000036111,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
51,cg14597600,0.000000422,0.00000361,0.116940011,0.906983316,gain,ns,-0.00000542,0.00000613,-0.884846117,0.376925421,neg,ns,-0.002513993,0.001795326,-1.40029885,0.162423904,neg,ns,0.789350055,-0.0000245,0.0000617,-0.39754146,0.691241813,neg,ns,0.841621303,Cnot3,Cnot3_threeUTR,7,3658709,3658758,3658757,3658758,50,-,GAGACACTCTTCTTCATCTTCTACTATCTGGAGGTACAGCAGGGCCCCCG,3' UTR,7,3645290,3661108,15819,1,Cnot3-205,13419,Cnot3-205;Cnot3-201;Cnot3-203;Cnot3-204;Cnot3-202;Cnot3-206;Leng1-201,Cnot3;Cnot3;Cnot3;Cnot3;Cnot3;Cnot3;Leng1,0;0;0;0;0;-632;7082,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,4,232791,ENSMUSG00000035632,conserved gene and region,7,3658757,3658854,98,*,98,9,0.795918367,0.583333333,0.091836735,0.000000773,CpGisland,TRUE,U10,Tr-S
7545,cg13787598,0.000007,0.00000749,0.935623313,0.35019543,gain,ns,0.0000113,0.0000127,0.884757876,0.376972946,pos,ns,0.010844598,0.003725772,2.910698335,0.003867456,pos,ns,2.412574583,-0.000335735,0.000128129,-2.620288154,0.009218197,neg,ns,0.624639836,Arhgef12,Arhgef12_Intron,9,43102089,43102138,43102137,43102138,50,-,ATCTTGTTCAGCCATGTGTCGCCTGCCACAAACTGCAAAACAGAACAACG,"Intron (Arhgef12-202/Arhgef12, intron 1 of 40)",9,42963842,43105987,142146,2,Arhgef12-202,3849,Arhgef12-202;Arhgef12-201;Arhgef12-205,Arhgef12;Arhgef12;Arhgef12,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,5,69632,ENSMUSG00000059495,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15252,cg24301614,0.0000834,0.0000135,6.159207653,2.27E-09,gain,yes,-0.0000203,0.000023,-0.884706781,0.377000467,neg,ns,0.018983022,0.006735938,2.818170624,0.005140196,pos,ns,2.289020353,-0.000500549,0.000231648,-2.160815687,0.031475268,neg,ns,0.339433525,Gm5197,Gm5197_Intron,13,80000918,80000967,80000966,80000967,50,+,AGGGCAGACTCAGCCAGTGGAAAAGATGTTCTGCACTAATGAACCCAGCG,"Intron (Gm28526-201/Gm28526-201, intron 1 of 2)",13,80098222,80099418,1197,2,Gm5197-201,98451,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,4,382780,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6294,cg25338102,-0.00000133,0.00000216,-0.616098605,0.538281556,loss,ns,0.00000325,0.00000367,0.884652127,0.377029906,pos,ns,0.00027253,0.001075463,0.253406823,0.800121828,pos,ns,0.096843882,-0.0000427,0.000037,-1.153394597,0.249636966,neg,ns,0.933456128,Tshz3,Tshz3_Intron,7,36739259,36739308,36739259,36739260,50,-,CGTGAGAGCTAGCAATTTGCTGGGCTCCCGATGACAGACACTGCATTATC,"Intron (Tshz3-201/Tshz3, intron 1 of 1)",7,36698118,36773553,75436,1,Tshz3-201,41141,Tshz3-201,Tshz3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,58,243931,ENSMUSG00000021217,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18948,cg12973314,0.00000813,0.00000307,2.651384486,0.008428274,gain,ns,-0.00000461,0.00000521,-0.884605978,0.377054765,neg,ns,0.0000224,0.001526158,0.014673512,0.988302091,pos,ns,0.005110286,-0.00000596,0.0000525,-0.113539486,0.909676354,neg,ns,0.868940869,Cacnb1,Cacnb1_Exon,11,98010314,98010363,98010314,98010315,50,+,CGGTCCCACCAGGATGATGGGCCTCATGGAAGGCACCACGTCATAGGGGG,"Exon (Cacnb1-201/Cacnb1, exon 8 of 14)",11,98001508,98022634,21127,2,Cacnb1-201,12271,Cacnb1-201;Cacnb1-203;Cacnb1-204;Cacnb1-202;Cacnb1-205;Cacnb1-207;Cacnb1-206,Cacnb1;Cacnb1;Cacnb1;Cacnb1;Cacnb1;Cacnb1;Cacnb1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,12295,ENSMUSG00000020882,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5202,cg03900224,0.0000808,0.0000119,6.81104392,5.04E-11,gain,yes,-0.0000178,0.0000201,-0.884543879,0.377088218,neg,ns,0.023567177,0.005901394,3.99349354,0.0000814,pos,ns,4.08957394,-0.000854768,0.000202948,-4.211748231,0.0000333,neg,ns,0.356032468,Sh2d3c,Sh2d3c_Exon,2,32750969,32751018,32750969,32750970,50,-,CGTTACCAAGGAGATGCAGACCCTAATGGGAGTCCGCTGGGGCATGGAAC,"Exon (Sh2d3c-201/Sh2d3c, exon 8 of 12)",2,32721055,32754994,33940,1,Sh2d3c-201,29914,Sh2d3c-201;Sh2d3c-202;Sh2d3c-204,Sh2d3c;Sh2d3c;Sh2d3c,0;0;9479,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,27387,ENSMUSG00000059013,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10846,cg09643550,0.0000295,0.0000101,2.923966921,0.003710649,gain,ns,-0.0000152,0.0000171,-0.884378413,0.377177363,neg,ns,-0.002405786,0.005022365,-0.479014466,0.632266045,neg,ns,0.199100141,-0.000271185,0.000172719,-1.57009373,0.117413406,neg,ns,0.849088219,Vti1a,Vti1a_threeUTR,19,55627084,55627133,55627132,55627133,50,-,CAGCCTGCCTGCTGCTGTATTTGAAGTTGTAATGGTGTCAAAAAGTCACG,3' UTR,19,55316350,55627309,310960,1,Vti1a-202,310734,Vti1a-202;Vti1a-201,Vti1a;Vti1a,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,8,32,53611,ENSMUSG00000024983,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18417,cg05499494,-0.000117597,0.0000201,-5.853715138,1.22E-08,loss,yes,0.0000302,0.0000341,0.884317761,0.377210043,pos,ns,-0.018875315,0.009998674,-1.88778173,0.059989083,neg,ns,1.221927776,0.0000739,0.000343854,0.214895615,0.829990004,pos,ns,0.754797313,Erg,Erg_Intron,16,95459056,95459105,95459056,95459057,50,+,CGGATGGTTGGAGTAGGAAAAAGGAAATTTACTAGGCAGTGCAAAGGAAA,"Intron (Erg-208/Erg, intron 2 of 10)",16,95359169,95530365,171197,2,Erg-208,71260,Erg-208;Erg-207;Erg-201;Erg-206;Erg-203;Erg-204;Erg-202;Erg-205,Erg;Erg;Erg;Erg;Erg;Erg;Erg;Erg,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,5,13876,ENSMUSG00000040732,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17233,cg06414149,0.000021,0.00000345,6.067752467,3.78E-09,gain,yes,-0.00000519,0.00000587,-0.884169024,0.377290191,neg,ns,0.00447624,0.001719586,2.603092338,0.009682959,pos,ns,2.013991892,-0.0000554,0.0000591,-0.936469553,0.349760441,neg,ns,0.069529431,Nog,Nog_Intergenic_downstream,11,89300219,89300268,89300219,89300220,50,+,CGGCACTCCGCCCCCAGGGTAGGTGTGAAAGACACGTGTCCCCATTGTGA,Downstream (<1kb),11,89300638,89302332,1695,2,Nog-201,2064,Nog-201,Nog,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,16,36,18121,ENSMUSG00000048616,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
14952,cg13496838,0.0000403,0.00000581,6.944710224,2.23E-11,gain,yes,-0.00000873,0.00000987,-0.884148021,0.377301509,neg,ns,0.003795363,0.002891773,1.312469459,0.190332672,pos,ns,0.720486656,0.000108027,0.0000994,1.086266417,0.278205078,pos,ns,0.183853704,Pax3,Pax3_Promoter,1,78198045,78198094,78198045,78198046,50,-,CGCCAGGAGTGTTGTAAAGACTGTCTGTCCTTAGAGAAGGTACCATTGTG,Promoter (<=1kb),1,78101270,78197134,95865,2,Pax3-202,-960,Pax3-201;Pax3-202;Pax3-203,Pax3;Pax3;Pax3,0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,17,18505,ENSMUSG00000004872,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
15072,cg14006844,0.00000516,0.00000315,1.639435758,0.10213691,gain,ns,0.00000472,0.00000534,0.884045236,0.377356902,pos,ns,0.0015192,0.001565509,0.970419346,0.332594044,pos,ns,0.478085532,-0.000100487,0.0000538,-1.866471824,0.062919385,neg,ns,0.938470956,Tmem229b,Tmem229b_Exon,12,78964834,78964883,78964882,78964883,50,-,ACTGGGAGTAGTCCCAGGGGCAGGCGTTGAACTGGCGCAGGATGAAGCCG,"Exon (Tmem229b-202/Tmem229b, exon 3 of 3)",12,78961795,78983478,21684,2,Tmem229b-202,18595,Tmem229b-202;Tmem229b-206;Tmem229b-204;Tmem229b-201;Tmem229b-207,Tmem229b;Tmem229b;Tmem229b;Tmem229b;Tmem229b,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,268567,ENSMUSG00000046157,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9535,cg22159540,0.0000194,0.00000246,7.867865642,6.07E-14,gain,yes,-0.00000369,0.00000418,-0.884028839,0.377365739,neg,ns,0.002250742,0.001224509,1.838077169,0.067007744,pos,ns,1.173875006,0.000000663,0.0000421,0.015738264,0.987453325,pos,ns,0.133980789,Igf2bp3,Igf2bp3_fiveUTR,6,49214926,49214975,49214974,49214975,50,-,CCGGCTTTTTGAATGAGCCACGTGTTCAAACTACAAATCAACGTCTCACG,Promoter (<=1kb),6,49085223,49214957,129735,2,Igf2bp3-201,0,Igf2bp3-201;Igf2bp3-202;Igf2bp3-203,Igf2bp3;Igf2bp3;Igf2bp3,0;-765;-222,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,5,140488,ENSMUSG00000029814,conserved gene but different region,6,49214800,49215683,884,*,884,82,0.622171946,0.999986205,0.092760181,2.09E-59,CpGisland,TRUE,U1,Pr-A
18275,cg04496356,-0.00000107,0.00000303,-0.35244864,0.724741325,loss,ns,-0.00000455,0.00000515,-0.883993781,0.377384635,neg,ns,-0.004063238,0.001509023,-2.69262919,0.007474532,neg,ns,2.126415991,0.0000703,0.0000519,1.354796461,0.17646891,pos,ns,0.870375844,Xylt2,Xylt2_Exon,11,94667225,94667274,94667273,94667274,50,-,CAGGTAGCCCTGGAAATGGTCGTCATAGAAATACAGGTGCACGCTGGACG,"Exon (Xylt2-201/Xylt2, exon 9 of 11)",11,94663851,94677515,13665,2,Xylt2-201,10241,Xylt2-201;Xylt2-204;Xylt2-203;Xylt2-205;Xylt2-202,Xylt2;Xylt2;Xylt2;Xylt2;Xylt2,0;0;0;0;10133,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,217119,ENSMUSG00000020868,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
622,cg16475673,-0.0000025,0.00000242,-1.034313711,0.301795718,loss,ns,-0.00000363,0.00000411,-0.883872332,0.377450096,neg,ns,-0.000604016,0.001204408,-0.501504712,0.616371917,neg,ns,0.210157156,0.0000203,0.0000414,0.490315997,0.624257157,pos,ns,0.954099197,Mark2,Mark2_Exon,19,7290628,7290677,7290676,7290677,50,-,GCCAACTTCACCTTGGCAAAATTACCCTTGCCAATGGTCTTGAGGAGCCG,"Exon (Mark2-202/Mark2, exon 2 of 18)",19,7275396,7341819,66424,2,Mark2-202,51142,Mark2-202;Mark2-206;Mark2-201;Mark2-221;Mark2-209;Mark2-203;Mark2-207;Mark2-215;Mark2-214;Mark2-220;Mark2-216;Mark2-210;Mark2-213,Mark2;Mark2;Mark2;Mark2;Mark2;Mark2;Mark2;Mark2;Mark2;Mark2;Mark2;Mark2;Mark2,0;0;0;0;0;0;0;0;-3265;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,10,13728,ENSMUSG00000024969,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6012,cg25987431,0.000120636,0.0000145,8.296002196,3.34E-15,gain,yes,-0.0000218,0.0000247,-0.883738644,0.377522162,neg,ns,0.042581865,0.007237428,5.883563413,1.04E-08,pos,ns,7.982737784,-0.000870665,0.000248895,-3.498128457,0.000537089,neg,ns,0.332178136,Cxxc5,Cxxc5_Intron,18,35849647,35849696,35849695,35849696,50,+,CTCTCCAGGCGCCCAGCTGTGGCATCTGTCAAGGTCAGATAGCGACTCCG,"Intron (Gm50371-201/Gm50371-201, intron 4 of 4)",18,35829397,35859002,29606,1,Cxxc5-202,20250,Cxxc5-202;Cxxc5-201;Cxxc5-206;Cxxc5-203;Cxxc5-204,Cxxc5;Cxxc5;Cxxc5;Cxxc5;Cxxc5,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,49,67393,ENSMUSG00000046668,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
1624,cg13247135,0.0000051,0.000007,0.72904614,0.46652387,gain,ns,-0.0000105,0.0000119,-0.883548522,0.377624665,neg,ns,-0.004802786,0.003484365,-1.378381866,0.169079368,neg,ns,0.771909385,0.00000627,0.000119827,0.052297677,0.958325188,pos,ns,0.735482808,Zfp521,Zfp521_Intron,18,13896842,13896891,13896890,13896891,50,-,CAGTTTACCCTTCATCTCTACCTGAAGCACCATGTTTTATACATTACCCG,"Intron (Zfp521-201/Zfp521, intron 3 of 7)",18,13687013,13972787,285775,2,Zfp521-201,75896,Zfp521-201;Zfp521-204;Zfp521-203;Zfp521-202,Zfp521;Zfp521;Zfp521;Zfp521,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,81,225207,ENSMUSG00000024420,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3335,cg19615432,0.0000186,0.00000622,2.991762992,0.00299637,gain,ns,0.00000934,0.0000106,0.883448688,0.377678497,pos,ns,0.00216294,0.003097535,0.698277903,0.485526878,pos,ns,0.313786723,0.0000269,0.000106524,0.252657307,0.800700489,pos,ns,0.764050023,Gm11890,Gm11890_Intergenic_downstream,4,23636241,23636290,23636289,23636290,50,-,ACCATCTGTGAGCCTGTCTTTCAGGCCATCAAACTCTCCCATCCATTACG,Distal Intergenic,4,23659928,23660344,417,2,Gm11890-201,24103,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,32,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13080,cg13241538,0.00000606,0.00000231,2.62977958,0.008970326,gain,ns,-0.00000346,0.00000392,-0.883405343,0.37770187,neg,ns,-0.002229742,0.001147654,-1.942869127,0.052937114,neg,ns,1.276239736,-0.0000876,0.0000395,-2.21892667,0.027215588,neg,ns,0.057690526,Arf6,Arf6_Exon,12,69373091,69373140,69373091,69373092,50,-,CGCCAGGAGCTGCACCGCATTATCAATGACCGGGAGATGAGGGACGCCAT,Promoter (<=1kb),12,69372150,69373783,1634,1,Arf6-201,941,Arf6-201;Gm18113-201,Arf6;Gm18113,0;-3068,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,8,11845,ENSMUSG00000044147,conserved gene and region,12,69371680,69373175,1496,*,1496,186,0.703877005,1.010385046,0.124331551,4.87E-160,CpGisland,TRUE,NA,NRS
21757,cg26694393,0.00000381,0.00000294,1.297113154,0.195556788,gain,ns,-0.00000441,0.00000499,-0.883392969,0.377708543,neg,ns,-0.00038026,0.001463031,-0.259912654,0.795103687,neg,ns,0.099576232,-0.000104011,0.0000503,-2.067253229,0.039540004,neg,ns,0.821738455,Zfhx3,Zfhx3_Exon,8,108956924,108956973,108956972,108956973,50,+,CATGCAGCACCTCAGGGGTTCAGCCCTCGATGCCAACAGACGACTATTCG,"Exon (Zfhx3-204/Zfhx3, exon 16 of 16)",8,107942644,108961630,1018987,1,Zfhx3-204,1014280,Zfhx3-204;Zfhx3-201,Zfhx3;Zfhx3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,46,177,11906,ENSMUSG00000038872,conserved gene and region,8,108956951,108957024,74,*,74,9,0.608108108,1.316205534,0.121621622,6.35E-08,CpGisland,TRUE,NA,NRS
3369,cg18954724,0.000100085,0.0000173,5.781443022,1.81E-08,gain,yes,0.000026,0.0000294,0.88325453,0.377783202,pos,ns,0.012349373,0.008616057,1.433297492,0.152780596,pos,ns,0.815931801,0.0000974,0.000296305,0.328756573,0.742561665,pos,ns,0.28758275,Apba1,Apba1_Exon,19,23893251,23893300,23893251,23893252,50,-,CGCTGCCCAACCACCTGCACTTCCACTCGCTGGAGCACGAGGAAGCCATG,"Exon (Apba1-201/Apba1, exon 2 of 13)",19,23758887,23949596,190710,1,Apba1-201,134364,Apba1-201,Apba1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,319924,ENSMUSG00000024897,conserved gene and region,19,23892739,23893861,1123,*,1123,151,0.715939448,1.050410382,0.134461265,4.45E-136,CpGisland,TRUE,NA,NRS
4080,cg07963266,-0.0000238,0.00000759,-3.139484608,0.001855439,loss,ns,0.0000114,0.0000129,0.88320084,0.377812159,pos,ns,0.007833235,0.003779634,2.072485051,0.039046493,pos,ns,1.408417971,-0.0000779,0.000129981,-0.599053235,0.549574902,neg,ns,0.947044331,Crebrf,Crebrf_fiveUTR,17,26739554,26739603,26739554,26739555,50,+,CGGAATGGATCCGCCTTTCGGGGATGCCTTTCGAAGCCACACCTTTTCGG,5' UTR,17,26715650,26776635,60986,1,Crebrf-201,23904,Crebrf-201;Crebrf-204;Crebrf-203;Crebrf-205;Crebrf-202,Crebrf;Crebrf;Crebrf;Crebrf;Crebrf,0;0;0;0;-3381,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,5,77128,ENSMUSG00000048249,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17944,cg13107358,-0.00000404,0.00000198,-2.040605373,0.042137004,loss,ns,0.00000297,0.00000336,0.883088366,0.377872825,pos,ns,0.000184597,0.000985754,0.187264387,0.851575847,pos,ns,0.069776665,0.0000124,0.0000339,0.366086515,0.714550223,pos,ns,0.045051334,Runx1,Runx1_fiveUTR,16,92697306,92697355,92697306,92697307,50,+,CGCCCGCTGGCTCTATGAATGAGAGTGCCTGGAAATGAACGTGCTTTTAC,Promoter (<=1kb),16,92603656,92697328,93673,2,Runx1-202,0,Runx1-201;Runx1-202;Runx1-203;Runx1-205;Runx1-206;Runx1-204,Runx1;Runx1;Runx1;Runx1;Runx1;Runx1,0;0;0;-1811;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,7,10,12394,ENSMUSG00000022952,mapped to different genes,16,92697175,92697868,694,*,694,67,0.687319885,0.817619131,0.096541787,6.68E-50,CpGisland,TRUE,U1,Pr-A
18959,cg00238826,0.00000817,0.00000815,1.002527782,0.316870645,gain,ns,-0.0000122,0.0000139,-0.883080956,0.377876822,neg,ns,-0.002430569,0.004058229,-0.598923396,0.549661374,neg,ns,0.259904781,-0.000083,0.000139562,-0.595016511,0.552266507,neg,ns,0.828414964,Clstn2,Clstn2_Intergenic_upstream,9,98068792,98068841,98068792,98068793,50,+,CGATTTCTGGAAAATGAATATTATAGAGTTTTCTATGACCCAAAGAGACT,Distal Intergenic,9,97444395,98033181,588787,2,Clstn2-201,-35611,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,2,64085,ENSMUSG00000032452,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18386,cg24625495,-0.00000738,0.00000437,-1.691242011,0.091795601,loss,ns,-0.00000655,0.00000742,-0.882907575,0.377970353,neg,ns,-0.00367986,0.002172643,-1.693725343,0.091321942,neg,ns,1.039424859,0.0000558,0.0000747,0.746473798,0.455946978,pos,ns,0.896720815,Arhgef9,Arhgef9_Exon,X,95071228,95071277,95071228,95071229,50,-,CGGCCGTAGGGCTGGTAGATCCAGGCCATCTCCCCAGTGTAGATCAGCTC,"Exon (Arhgef9-202/Arhgef9, exon 7 of 10)",20,95048935,95166361,117427,2,Arhgef9-202,95084,Arhgef9-202;Arhgef9-217;Arhgef9-205;Arhgef9-207;Arhgef9-210;Arhgef9-203;Arhgef9-209;Arhgef9-206;Arhgef9-208;Arhgef9-204;Arhgef9-216;Arhgef9-215;Arhgef9-219;Arhgef9-201,Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,14,236915,ENSMUSG00000025656,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22956,cg22330399,0.00000858,0.00000821,1.045975813,0.296387085,gain,ns,-0.0000123,0.0000139,-0.882769099,0.378045064,neg,ns,-0.00854355,0.004084421,-2.09174046,0.03727518,neg,ns,1.428580251,0.000226517,0.000140463,1.612643526,0.107839498,pos,ns,0.81087291,Gm13991,Gm13991_Intergenic_downstream,2,116324597,116324646,116324597,116324598,50,-,CGTGCTGAGCCTTTAATTGGGTTTTTAATTTTCCAGGCCATCTGACAATA,Distal Intergenic,2,116527843,116528490,648,2,Gm13991-201,203893,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,14,20,433464,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21895,cg15587737,-0.00000121,0.00000137,-0.883820963,0.377477786,loss,ns,-0.00000205,0.00000232,-0.882736229,0.378062799,neg,ns,-0.000255384,0.000679829,-0.375659237,0.707427169,neg,ns,0.150318265,-0.00000504,0.0000234,-0.215586245,0.829452052,neg,ns,0.027763056,Cdkn2c,Cdkn2c_fiveUTR,4,109665287,109665336,109665335,109665336,50,-,TAAATACTAGTAAGATCTGCCTGCCAAAAGCCCGCCCCTCGATTCACACG,Promoter (<=1kb),4,109660876,109665372,4497,2,Cdkn2c-201,36,Cdkn2c-201;Cdkn2c-202,Cdkn2c;Cdkn2c,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,8,13,12580,ENSMUSG00000028551,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
13673,cg03611818,0.000076,0.0000121,6.30193742,1.01E-09,gain,yes,-0.0000181,0.0000205,-0.882674623,0.378096041,neg,ns,0.023789748,0.006002356,3.963401421,0.0000918,pos,ns,4.037302694,0.000147235,0.000206421,0.713277996,0.476210352,pos,ns,0.373534297,Tcf12,Tcf12_Intron,9,71976252,71976301,71976252,71976253,50,+,CGGGCACAAACACATGGCCACCAATCAATGGCACCCTGAGGACCTCGGAG,"Intron (Tcf12-202/Tcf12, intron 5 of 20)",9,71842688,72111847,269160,2,Tcf12-202,135546,Tcf12-202;Tcf12-201;Tcf12-220;Tcf12-221;Tcf12-218;Tcf12-216;Tcf12-208;Tcf12-210;Tcf12-214;Tcf12-205;Tcf12-203;Tcf12-211;Tcf12-204;Tcf12-212,Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,12,21406,ENSMUSG00000032228,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25125,cg14354194,0.000094,0.0000137,6.858984264,3.77E-11,gain,yes,-0.0000206,0.0000233,-0.882655498,0.378106362,neg,ns,0.016573014,0.006820954,2.429720914,0.015678075,pos,ns,1.804707253,-0.000483585,0.000234572,-2.061562403,0.040082844,neg,ns,0.331569696,Ahdc1,Ahdc1_Intron,4,133042999,133043048,133043047,133043048,50,+,CGAGTGTCACACTATCTCTCCCCAGGTTTACTGACCCATTTCCATTCACG,"Intron (Ahdc1-210/Ahdc1, intron 2 of 3)",4,133011260,133060820,49561,1,Ahdc1-210,31739,Ahdc1-210;Ahdc1-203;Ahdc1-204;Ahdc1-205;Ahdc1-207;Ahdc1-211;Ahdc1-209;Ahdc1-206;Ahdc1-201;Ahdc1-202,Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,35,49,230793,ENSMUSG00000037692,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
4392,cg08272930,-0.0000072,0.00000906,-0.794703533,0.427393959,loss,ns,0.0000136,0.0000154,0.882578287,0.378148027,pos,ns,0.004901803,0.004509721,1.086941345,0.277907143,pos,ns,0.55610029,-0.000313886,0.000155089,-2.023909101,0.043836967,neg,ns,0.777674179,Unc5d,Unc5d_Exon,8,28725148,28725197,28725196,28725197,50,-,CTCTCCTACTCCATCCTATTGAATGCATGGGCAAAGCAAAAATAAAAGCG,"Exon (Unc5d-201/Unc5d, exon 9 of 18)",8,28646717,29219636,572920,2,Unc5d-201,494439,Unc5d-201;Unc5d-204;Unc5d-202;Unc5d-203;Unc5d-205,Unc5d;Unc5d;Unc5d;Unc5d;Unc5d,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,11,210801,ENSMUSG00000063626,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22559,cg00325725,0.00000489,0.00000616,0.793756579,0.42794431,gain,ns,-0.00000923,0.0000105,-0.882492937,0.378194088,neg,ns,-0.002038326,0.003065425,-0.664940683,0.506582793,neg,ns,0.295349566,-0.000113426,0.00010542,-1.075944385,0.282788778,neg,ns,0.820185219,Rpl19-ps10,Rpl19-ps10_Intergenic_upstream,7,115132106,115132155,115132106,115132107,50,-,CGGGTAACAATGGTGACCAGCCTCCCTACAGTAATTGTGTACGAGGACAC,Distal Intergenic,7,115172056,115172385,330,1,Rpl19-ps10-201,-39950,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,29,668472,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27003,cg27062689,-0.0000154,0.00000345,-4.45640185,0.0000117,loss,ns,0.00000517,0.00000586,0.882333428,0.378280179,pos,ns,0.004079478,0.001717628,2.375064913,0.018153977,pos,ns,1.741028208,-0.000135495,0.0000591,-2.29383822,0.02246842,neg,ns,0.879321334,Cpne1,Cpne1_fiveUTR,2,156098206,156098255,156098254,156098255,50,-,TGGCAAAAACGATGAAAGCCTCACCCAGTTCACCCCCTACAATATGCACG,5' UTR,2,156071842,156111935,40094,2,Cpne1-217,13680,Cpne1-217;Cpne1-209;Cpne1-202;Cpne1-203;Cpne1-201;Cpne1-210;Cpne1-206;Cpne1-212;Cpne1-208;Cpne1-205;Cpne1-213;Cpne1-216;Gm28036-201;Gm28036-202;Gm28036-203;Gm28036-204;Gm28036-205;Gm28036-208;Gm28036-207;Gm28036-206;Rbm12-201;Rbm12-202;Rbm12-204;Rbm12-203;Rbm12-205,Cpne1;Cpne1;Cpne1;Cpne1;Cpne1;Cpne1;Cpne1;Cpne1;Cpne1;Cpne1;Cpne1;Cpne1;Gm28036;Gm28036;Gm28036;Gm28036;Gm28036;Gm28036;Gm28036;Gm28036;Rbm12;Rbm12;Rbm12;Rbm12;Rbm12,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;-1278;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,TRUE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,9,266692,ENSMUSG00000074643,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5331,cg18264421,0.000000956,0.00000194,0.493706522,0.62186306,gain,ns,-0.0000029,0.00000329,-0.882266175,0.378316481,neg,ns,0.002669625,0.00096346,2.770873772,0.00592817,pos,ns,2.227079321,-0.0000744,0.0000331,-2.245668442,0.025429533,neg,ns,0.948665099,Zfp148,Zfp148_Exon,16,33497183,33497232,33497231,33497232,50,-,GCTGGAATAGCTACTCAATTTAGCACTGCCAATGGACAGGTGAACCTTCG,"Exon (Zfp148-202/Zfp148, exon 9 of 9)",16,33380836,33504363,123528,1,Zfp148-202,116347,Zfp148-202;Zfp148-205;Zfp148-201,Zfp148;Zfp148;Zfp148,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,7,22661,ENSMUSG00000022811,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17230,cg20076114,0.0000117,0.00000237,4.946281348,0.00000124,gain,yes,-0.00000355,0.00000403,-0.882069846,0.378422468,neg,ns,0.000829084,0.001180422,0.702362474,0.48298018,pos,ns,0.316070691,0.000000496,0.0000406,0.012221294,0.990256922,pos,ns,0.066813714,Nog,Nog_Intergenic_downstream,11,89299103,89299152,89299103,89299104,50,-,CGCCAGGAAGATTAAATGAAAGAATCATAAGATGGAGGTCTTTAACTTTT,Distal Intergenic,11,89300638,89302332,1695,2,Nog-201,3229,Nog-201,Nog,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,36,18121,ENSMUSG00000048616,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
6239,cg10127572,-0.00000356,0.00000408,-0.873424409,0.383107862,loss,ns,-0.00000612,0.00000693,-0.882068675,0.378423101,neg,ns,0.002852266,0.002031323,1.404142063,0.161277599,pos,ns,0.792425951,-0.000111873,0.0000699,-1.601455609,0.110294534,neg,ns,0.958751544,Tbc1d14,Tbc1d14_Exon,5,36508376,36508425,36508376,36508377,50,+,CGGTAACAAGTATAAGCGCCCAAAATACTGTGCAACATGTCATGATATGG,"Exon (Tbc1d14-215/Tbc1d14, exon 10 of 14)",5,36490604,36574325,83722,2,Tbc1d14-215,65900,Tbc1d14-215;Tbc1d14-205;Tbc1d14-201;Tbc1d14-221;Tbc1d14-203;Tbc1d14-210;Tbc1d14-223;Tbc1d14-202;Tbc1d14-204;Tbc1d14-222;Tbc1d14-219;Tbc1d14-217,Tbc1d14;Tbc1d14;Tbc1d14;Tbc1d14;Tbc1d14;Tbc1d14;Tbc1d14;Tbc1d14;Tbc1d14;Tbc1d14;Tbc1d14;Tbc1d14,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,100855,ENSMUSG00000029192,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13445,cg20081193,-0.00000132,0.000000829,-1.590009794,0.112851864,loss,ns,0.00000124,0.00000141,0.881898967,0.378514732,pos,ns,0.000172396,0.000412435,0.417994599,0.676240454,pos,ns,0.169898852,-0.00000265,0.0000142,-0.186796061,0.851942722,neg,ns,0.976723075,Sltm,Sltm_Exon,9,70584008,70584057,70584008,70584009,50,+,CGCTTACAGAGAGAGAGAGAGCGCCTAGAAATTGAAAGGCAAAAACTAGA,"Exon (Sltm-206/Sltm, exon 15 of 21)",9,70542754,70592234,49481,1,Sltm-206,41254,Sltm-206;Sltm-203;Sltm-201;Sltm-208;Sltm-204;Sltm-207,Sltm;Sltm;Sltm;Sltm;Sltm;Sltm,0;0;0;0;8600;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,11,66660,ENSMUSG00000032212,mapped to different genes,9,70583933,70584030,98,*,98,10,0.489795918,2.058823529,0.102040816,5.13E-08,CpGisland,TRUE,U10,Tr-S
25611,cg15264026,0.0000828,0.0000108,7.658801732,2.41E-13,gain,yes,0.0000162,0.0000184,0.881888582,0.378520339,pos,ns,0.002607762,0.005380858,0.48463679,0.62827626,pos,ns,0.20184935,0.000303072,0.000185047,1.637808855,0.102476168,pos,ns,0.152345509,Ebf3,Ebf3_Promoter,7,137316524,137316573,137316524,137316525,50,-,CGCCAAGGCGATTTAAATCTGATTACCAAATTAGAAGGTTTAAAAACAAA,Promoter (2-3kb),7,137193673,137314445,120773,2,Ebf3-204,-2128,Ebf3-204;Ebf3-201;Ebf3-202;Ebf3-203;Ebf3-208;Ebf3-206,Ebf3;Ebf3;Ebf3;Ebf3;Ebf3;Ebf3,0;0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,9,84,13593,ENSMUSG00000010476,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
24636,cg22816588,-0.0000281,0.0000105,-2.685931759,0.007622469,loss,ns,-0.0000157,0.0000178,-0.881689522,0.378627836,neg,ns,0.000506491,0.005213538,0.097149276,0.922670628,pos,ns,0.034953304,-0.000165258,0.000179293,-0.921720815,0.357390984,neg,ns,0.756319275,Pard3,Pard3_Exon,8,127380454,127380503,127380502,127380503,50,-,AATTCTTCTAGAATGCAGAGCCAAGCCAGATGCAGATTCCAAAAGAAACG,"Exon (Pard3-219/Pard3, exon 12 of 25)",8,127063893,127611970,548078,1,Pard3-219,316561,Pard3-219;Pard3-202;Pard3-209;Pard3-226;Pard3-211;Pard3-222;Pard3-201;Pard3-224;Pard3-210;Pard3-216;Pard3-223;Pard3-221;Pard3-213;Pard3-206;Pard3-214;Pard3-212;Pard3-220;Pard3-203;Pard3-218;Pard3-228,Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;8964,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,8,93742,ENSMUSG00000025812,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13274,cg04548249,-0.0000138,0.00000916,-1.509511927,0.132186547,loss,ns,0.0000137,0.0000156,0.881677239,0.37863447,pos,ns,0.003393522,0.004559228,0.744319466,0.457247062,pos,ns,0.339849077,-0.000237386,0.000156791,-1.514024063,0.131038604,neg,ns,0.761425403,Ank3,Ank3_Exon,10,69988625,69988674,69988625,69988626,50,-,CGAAAAAGGTAACCAAGCTGAGCCCACTGAAGTCATTATTAGAGAAACCA,"Exon (Ank3-233/Ank3, exon 37 of 43)",10,69398996,70023957,624962,1,Ank3-247,589629,Ank3-247;Ank3-231;Ank3-210;Ank3-239;Ank3-240;Ank3-220;Ank3-201;Ank3-202;Ank3-203;Ank3-204;Ank3-206;Ank3-233;Ank3-221;Ank3-232;Ank3-228;Ank3-205;Ank3-215;Ank3-237;Ank3-242;Ank3-208;Ank3-227;Ank3-207;Ank3-230;Ank3-219;Ank3-244;Ank3-238;Ank3-213;Ank3-224;Ank3-236;Ank3-225;Ank3-243,Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,13,11735,ENSMUSG00000069601,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U14,Hc-H
5843,cg21888402,0.0000328,0.00000778,4.21517573,0.0000328,gain,ns,0.0000117,0.0000132,0.881662056,0.37864267,pos,ns,0.010011146,0.003871183,2.586068747,0.010163631,pos,ns,1.992951102,-0.0000703,0.00013313,-0.52839724,0.597601718,neg,ns,0.730152292,Kirrel3,Kirrel3_Intron,9,34964399,34964448,34964447,34964448,50,-,GACCATTAGCACCTCTCTGGGAATATTTAACTGAAAACAATTTCTAGTCG,"Intron (Kirrel3-202/Kirrel3, intron 5 of 16)",9,34486126,35035280,549155,1,Kirrel3-202,478273,Kirrel3-202;Kirrel3-206;Kirrel3-209;Kirrel3-201;Kirrel3-208;Kirrel3-205,Kirrel3;Kirrel3;Kirrel3;Kirrel3;Kirrel3;Kirrel3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,21,67703,ENSMUSG00000032036,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24973,cg08617442,0.00000287,0.00000214,1.343795544,0.179997224,gain,ns,0.0000032,0.00000363,0.881578849,0.37868761,pos,ns,0.000718472,0.001062905,0.675951168,0.499575603,pos,ns,0.301398779,-0.00000502,0.0000366,-0.13726922,0.89090711,neg,ns,0.938758067,Ptpra,Ptpra_Exon,2,130549703,130549752,130549703,130549704,50,-,CGGCAGATCCGGCAGTTCCACTTCCATGGCTGGCCTGAAGTGGGCATCCC,"Exon (Ptpra-201/Ptpra, exon 19 of 21)",2,130450278,130556124,105847,1,Ptpra-201,99425,Ptpra-201;Ptpra-202;Ptpra-208;Ptpra-209,Ptpra;Ptpra;Ptpra;Ptpra,0;0;0;5170,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,19262,ENSMUSG00000027303,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12545,cg26156120,-0.00000225,0.00000184,-1.222068196,0.222610247,loss,ns,-0.00000276,0.00000313,-0.881368292,0.378801348,neg,ns,0.000618662,0.000916944,0.674700368,0.500369013,pos,ns,0.300709593,-0.000025,0.0000315,-0.793054652,0.428352524,neg,ns,0.943796799,Prpf39,Prpf39_threeUTR,12,65055494,65055543,65055494,65055495,50,+,CGTCCTTCCTTACAGAAACTAGTCTAGTGGTTCAATAAAGGTGCTGAATG,3' UTR,12,65036333,65063386,27054,1,Prpf39-201,19161,Prpf39-201;Prpf39-205;Prpf39-202;Prpf39-207;Prpf39-209;Prpf39-203;Prpf39-204,Prpf39;Prpf39;Prpf39;Prpf39;Prpf39;Prpf39;Prpf39,0;0;0;0;0;0;4383,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,5,7,328110,ENSMUSG00000035597,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22530,cg07092208,-0.0000163,0.00000304,-5.381877287,0.000000146,loss,yes,0.00000455,0.00000516,0.881164026,0.378911708,pos,ns,-0.001924966,0.001512017,-1.273111395,0.203932394,neg,ns,0.690513781,-0.0000267,0.000052,-0.513238552,0.608150026,neg,ns,0.952247359,Rps4l-ps,Rps4l-ps_Promoter,7,114934107,114934156,114934155,114934156,50,-,AAAACTCACCCTTTAATCAAGAGTTATTCTTGCATAAAGAATGTCACTCG,Promoter (6-7kb),7,114926959,114927726,768,2,Rps4l-ps-201,-6430,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,19,627967,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3693,cg19154884,-0.00000649,0.0000047,-1.381583955,0.168094374,loss,ns,0.00000704,0.00000798,0.88116077,0.378913467,pos,ns,0.000204236,0.002339129,0.087312746,0.930479295,pos,ns,0.031293286,-0.0000493,0.0000804,-0.612655267,0.540553464,neg,ns,0.049071155,Lpp,Lpp_Intergenic_downstream,16,25059441,25059490,25059441,25059442,50,-,CGGAAACGCAGCCAAGAGCTGCTAACTGGGTCATTAACCTCCAAAAGCAA,Distal Intergenic,16,24845175,24979450,134276,1,Lpp-206,214315,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,7,210126,ENSMUSG00000033306,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
133,cg03590466,-0.000000452,0.00000249,-0.181478664,0.856110479,loss,ns,-0.00000373,0.00000423,-0.881133105,0.378928416,neg,ns,-0.001472007,0.001238675,-1.188372032,0.23559647,neg,ns,0.62783122,0.0000992,0.0000426,2.328244957,0.020542103,pos,ns,0.95537095,Kdm2a,Kdm2a_Exon,19,4324670,4324719,4324718,4324719,50,+,TGGAGCTCTTTGGTGGGCCTCTGTAGCGTGACAGTGAGGTACGATCCCCG,"Exon (Kdm2a-201/Kdm2a, exon 17 of 21)",19,4314419,4398285,83867,2,Kdm2a-201,73566,Kdm2a-201;Kdm2a-202;Kdm2a-213;Kdm2a-211;Kdm2a-207;Kdm2a-214;Kdm2a-212;Kdm2a-210,Kdm2a;Kdm2a;Kdm2a;Kdm2a;Kdm2a;Kdm2a;Kdm2a;Kdm2a,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,21,30,225876,ENSMUSG00000054611,conserved gene and region,19,4324711,4324995,285,*,285,19,0.621052632,0.696373457,0.066666667,1.66E-11,CpGisland,TRUE,U10,Tr-S
5184,cg05312482,-0.0000253,0.00000979,-2.583094802,0.010249759,loss,ns,-0.0000147,0.0000166,-0.881085045,0.378954385,neg,ns,-0.0025448,0.004873058,-0.5222183,0.601891304,neg,ns,0.220481931,-0.0000462,0.000167584,-0.275838545,0.782855863,neg,ns,0.795486148,Prrxl1,Prrxl1_Intron,14,32606717,32606766,32606717,32606718,50,+,CGAACTGTCAGTGCAAAGTCATTAAAATATGATAATGAAAAATAGCTCAA,"Intron (Prrxl1-203/Prrxl1, intron 4 of 7)",14,32599407,32649204,49798,1,Prrxl1-203,7310,Prrxl1-203;Prrxl1-204;Prrxl1-202;Prrxl1-201;Prrxl1-205,Prrxl1;Prrxl1;Prrxl1;Prrxl1;Prrxl1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,23,107751,ENSMUSG00000041730,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13053,cg20567890,-0.000000221,0.0000105,-0.021178599,0.983116811,loss,ns,0.0000156,0.0000178,0.881046725,0.378975092,pos,ns,0.019185919,0.005201854,3.688284552,0.000266535,pos,ns,3.574246251,-0.000515365,0.000178891,-2.880880404,0.004242144,neg,ns,0.826561925,Chd3,Chd3_Exon,11,69346547,69346596,69346595,69346596,50,-,TGAGGGGTGCGGGGTGAAGACTTACGCAGCGTTGTGGGCCCTCCCCCGCG,"Exon (Chd3-211/Chd3, exon 5 of 8)",11,69343273,69348610,5338,2,Chd3-203,2014,Chd3-205;Chd3-203;Chd3-202;Chd3-211;Chd3-201;Chd3-204;Chd3-208;Rnf227-201;Rnf227-203,Chd3;Chd3;Chd3;Chd3;Chd3;Chd3;Chd3;Rnf227;Rnf227,0;0;0;0;0;0;0;6086;5776,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,22,26,216848,ENSMUSG00000018474,conserved gene and region,11,69346504,69346858,355,*,355,27,0.676056338,0.691010021,0.076056338,1.34E-17,CpGisland,TRUE,U10,Tr-S
17635,cg08538268,-0.00000158,0.00000206,-0.769194228,0.442363671,loss,ns,-0.00000308,0.00000349,-0.880730139,0.379146192,neg,ns,-0.002855063,0.001023103,-2.790592549,0.00558723,neg,ns,2.252803461,0.0000573,0.0000352,1.627972979,0.104546477,pos,ns,0.94753642,Elavl2,Elavl2_fiveUTR,4,91311613,91311662,91311661,91311662,50,+,AGAGAAGCCACATCACACAGTCTGACTGCCATGTTAGTTTGGAGTTGCCG,5' UTR,4,91250763,91372034,121272,2,Elavl2-204,60372,Elavl2-204;Elavl2-201;Elavl2-207;Elavl2-208;Elavl2-202;Elavl2-209;Elavl2-206;Elavl2-203;Elavl2-205;Elavl2-215;Elavl2-216;Elavl2-212;Elavl2-214,Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,8,31,15569,ENSMUSG00000008489,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1143,cg04825610,-0.0000783,0.0000101,-7.724734674,1.57E-13,loss,yes,0.0000152,0.0000172,0.88069027,0.379167743,pos,ns,0.021126232,0.005047614,4.185389741,0.0000371,pos,ns,4.430359345,-0.000653818,0.000173587,-3.766515235,0.000198068,neg,ns,0.603916947,Rpl23a-ps13,Rpl23a-ps13_Intergenic_upstream,X,11800739,11800788,11800787,11800788,50,-,GAAGGAAATTACTATTGATCCCACAGCTCTCCTCCCCATGCTGTTTGCCG,Distal Intergenic,20,11867265,11867705,441,1,Rpl23a-ps13-201,-66526,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,13,14,628338,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7184,cg21664322,-0.000034,0.000013,-2.614610126,0.0093694,loss,ns,0.0000194,0.0000221,0.880634617,0.379197827,pos,ns,-0.004106395,0.006469595,-0.634722091,0.526077838,neg,ns,0.278949993,0.000133826,0.000222489,0.601497066,0.547948569,pos,ns,0.572400635,Lcor,Lcor_Intron,19,41566258,41566307,41566306,41566307,50,-,CTTAAACCTAACAGTGACTTGTATTTTTCTGTTTTGCTTTTATTTCAACG,"Intron (Lcor-206/Lcor, intron 7 of 7)",19,41483029,41586536,103508,1,Lcor-206,83229,Lcor-201;Lcor-206,Lcor;Lcor,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,25,212391,ENSMUSG00000025019,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20068,cg02673411,-0.000006,0.00000307,-1.957585671,0.051175589,loss,ns,-0.00000459,0.00000521,-0.880627145,0.379201866,neg,ns,-0.000770537,0.001525495,-0.505106302,0.613843073,neg,ns,0.21194264,-0.0000147,0.0000525,-0.280077648,0.779604731,neg,ns,0.932584867,Hdac8,Hdac8_Exon,X,102402609,102402658,102402657,102402658,50,+,TAGTGTTTTCCCTAGGATGACCCCGGTCAAGTATGTCCAGCATCGAGCCG,"Exon (Hdac8-201/Hdac8, exon 9 of 11)",20,102284639,102505359,220721,2,Hdac8-201,102701,Hdac8-201;Hdac8-205;Hdac8-203,Hdac8;Hdac8;Hdac8,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,7,70315,ENSMUSG00000067567,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5561,cg26361178,0.00000247,0.00000674,0.367156441,0.713752837,gain,ns,-0.0000101,0.0000115,-0.880235795,0.379413458,neg,ns,-0.003758008,0.00335488,-1.120161571,0.263511997,neg,ns,0.579199607,0.0000076,0.000115374,0.065831472,0.947554433,pos,ns,0.86420269,4931406P16Rik,4931406P16Rik_Exon,7,34257374,34257423,34257374,34257375,50,+,CGACTCATTAAAGGAGACGCCCTTCAGGAAGTGCGATCCTATCTGCACAG,"Exon (4931406P16Rik-202/4931406P16Rik, exon 6 of 14)",7,34236707,34313551,76845,2,4931406P16Rik-202,56128,4931406P16Rik-202;4931406P16Rik-201;4931406P16Rik-210;4931406P16Rik-206,4931406P16Rik;4931406P16Rik;4931406P16Rik;4931406P16Rik,0;0;0;-155,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,8,233103,ENSMUSG00000066571,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13332,cg14589467,-0.000043,0.00000949,-4.529755802,0.00000844,loss,ns,0.0000142,0.0000161,0.880210035,0.379427388,pos,ns,-0.008816198,0.004724779,-1.865949436,0.062992685,neg,ns,1.20070988,0.000206979,0.000162485,1.273833568,0.203676618,pos,ns,0.632341208,Bin3,Bin3_Intron,14,70131296,70131345,70131344,70131345,50,-,TCGGATGGGGATGCTTTCAATTTCCCTTTCCTGGTGGGTGGAAGCTCCCG,"Intron (Bin3-201/Bin3, intron 6 of 8)",14,70100105,70138206,38102,1,Bin3-201,31191,Bin3-201;Bin3-202;Bin3-205;Bin3-204,Bin3;Bin3;Bin3;Bin3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,4,57784,ENSMUSG00000022089,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16134,cg04920416,-0.0000477,0.00000847,-5.63395803,3.96E-08,loss,yes,-0.0000127,0.0000144,-0.880074407,0.379500737,neg,ns,0.024207657,0.004215315,5.742786866,2.22E-08,pos,ns,7.653327605,-0.000701011,0.000144964,-4.835748691,0.00000209,neg,ns,0.891546146,Aatf,Aatf_Intron,11,84482044,84482093,84482044,84482045,50,-,CGCGGGCTACCCAGGCATGAGGAAAAATTATTAAAGCAAGGCAGAGATTA,"Intron (Aatf-201/Aatf, intron 5 of 12)",11,84422855,84513522,90668,2,Aatf-201,31429,Aatf-201;Aatf-202;Aatf-204,Aatf;Aatf;Aatf,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,10,56321,ENSMUSG00000018697,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7480,cg11222252,0.0000913,0.0000116,7.880165354,5.59E-14,gain,yes,-0.0000173,0.0000197,-0.880055583,0.379510918,neg,ns,0.023455901,0.00576407,4.069329377,0.0000599,pos,ns,4.222712785,-0.000563422,0.000198226,-2.842320504,0.004775679,neg,ns,0.452724126,Pou3f3,Pou3f3_Intron,1,42741879,42741928,42741879,42741880,50,-,CGCAGTTACCACGGTGACAGCATGTCACCATTGCCCTAGTGTCCTTCTAG,"Intron (Gm20646-201/Gm20646-201, intron 1 of 1)",1,42695768,42703176,7409,1,Pou3f3-201,46160,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,37,18993,ENSMUSG00000045515,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
742,cg07292994,-0.00000351,0.00000184,-1.904935397,0.057713718,loss,ns,0.00000276,0.00000313,0.87992934,0.3795792,pos,ns,0.001471357,0.000918044,1.602707337,0.110017675,pos,ns,0.958537539,0.00000135,0.0000316,0.042905587,0.965804417,pos,ns,0.048266557,Nipbl,Nipbl_Promoter,15,8444620,8444669,8444668,8444669,50,+,TCAGAACAAAATGCCGACCGGAAGTGCAGCTGCAGGAATGACTCCCTCCG,Promoter (<=1kb),15,8290617,8444463,153847,2,Nipbl-201,-157,Nipbl-201,Nipbl,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,5,36,71175,ENSMUSG00000022141,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
1823,cg18150426,-0.0000162,0.00000327,-4.966547338,0.00000113,loss,yes,0.00000488,0.00000555,0.879857665,0.379617971,pos,ns,-0.001805373,0.001625242,-1.110833291,0.26750095,neg,ns,0.572674671,-0.00000557,0.0000559,-0.099703462,0.920644197,neg,ns,0.920877274,Foxp2,Foxp2_Exon,6,15409858,15409907,15409906,15409907,50,-,TCAGTAATCACCCCAGCCAGTGTGCCCAATGTGGGAGCCATACGAAGGCG,"Exon (Foxp2-207/Foxp2, exon 13 of 19)",6,14901349,15441977,540629,1,Foxp2-207,508509,Foxp2-207;Foxp2-213;Foxp2-205;Foxp2-204;Foxp2-201;Foxp2-209;Foxp2-202;Foxp2-206,Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,65,114142,ENSMUSG00000029563,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22062,cg26439372,-0.0000166,0.00000521,-3.177811662,0.001633575,loss,ns,-0.00000779,0.00000886,-0.879809084,0.379644251,neg,ns,-0.003579709,0.002594693,-1.379626994,0.168695838,neg,ns,0.772895631,0.0000326,0.0000892,0.365174032,0.715230519,pos,ns,0.850691174,Setd2,Setd2_threeUTR,9,110577225,110577274,110577225,110577226,50,-,CGTGCATTCTGTGAAGAAACAGGAAGATGGTTGGGAAGTTGGATGATGCA,3' UTR,9,110532597,110618633,86037,1,Setd2-201,44628,Setd2-201;Setd2-203;Setd2-210;Setd2-206,Setd2;Setd2;Setd2;Setd2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,3,235626,ENSMUSG00000044791,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11676,cg18566009,-0.00000391,0.00000191,-2.04765619,0.041436127,loss,ns,0.00000286,0.00000325,0.8797963,0.379651168,pos,ns,0.000273484,0.00095139,0.28745743,0.773954156,pos,ns,0.111284764,-0.00000455,0.0000327,-0.13897341,0.889561398,neg,ns,0.95791637,Myo9a,Myo9a_Exon,9,59875191,59875240,59875239,59875240,50,+,TGGTCAAGCAGGTTGCCAGACCGGCCCATAAAAAGAAAGCTCGAATGGCG,"Exon (Myo9a-205/Myo9a, exon 27 of 43)",9,59750896,59928866,177971,1,Myo9a-203,124295,Myo9a-203;Myo9a-205;Myo9a-206;Myo9a-207,Myo9a;Myo9a;Myo9a;Myo9a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,8,270163,ENSMUSG00000039585,conserved gene and region,9,59875212,59875313,102,*,102,9,0.529411765,1.35,0.088235294,0.00000109,CpGisland,TRUE,NA,NRS
11529,cg02398612,0.00000871,0.00000314,2.7715806,0.005915631,gain,ns,0.0000047,0.00000534,0.879787618,0.379655864,pos,ns,0.003995219,0.001563954,2.554563393,0.011109818,pos,ns,1.954293061,-0.000102179,0.0000538,-1.899789396,0.05838862,neg,ns,0.059152807,Med12l,Med12l_fiveUTR,3,59006959,59007008,59007007,59007008,50,-,CAGCTCCAACTCTCATTCATTTCGCCGGTTAACATGAGAGATCATGGCCG,Promoter (<=1kb),3,59006978,59093788,86811,1,Med12l-201,0,Med12l-203;Med12l-206;Med12l-201;Med12l-202;Med12l-204,Med12l;Med12l;Med12l;Med12l;Med12l,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,9,329650,ENSMUSG00000056476,conserved gene but different region,3,59006944,59007530,587,*,587,59,0.63713799,0.990646453,0.100511073,3.98E-45,CpGisland,TRUE,U3,Pr-B
20029,cg18468467,0.0000167,0.0000155,1.08192624,0.28012619,gain,ns,0.0000231,0.0000263,0.879778682,0.379660698,pos,ns,0.005527003,0.007701565,0.71764666,0.473515612,pos,ns,0.324665698,-0.000134875,0.000264856,-0.509238972,0.610947011,neg,ns,0.331635973,Cited1,Cited1_Promoter,X,102251949,102251998,102251949,102251950,50,-,CGTCTTTATAACCGGCTTAGGGCATTATTAGCACATGTCCTGGCTCGTGG,Promoter (<=1kb),20,102247381,102252181,4801,2,Cited1-201,183,Cited1-201;Cited1-202;Cited1-204;Cited1-203;Cited1-205,Cited1;Cited1;Cited1;Cited1;Cited1,0;-97;-1003;-1174;-31,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,2,3,12705,ENSMUSG00000051159,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
17417,cg13132403,-0.00000512,0.0000022,-2.331554377,0.020364682,loss,ns,0.00000329,0.00000373,0.879767327,0.379666841,pos,ns,0.002041637,0.001093979,1.866249278,0.062950603,pos,ns,1.201000105,-0.0000935,0.0000376,-2.485015919,0.013481797,neg,ns,0.939027258,Tox3,Tox3_Intergenic_downstream,8,90186748,90186797,90186796,90186797,50,+,ACAGAGCATGAAGATAAATTATAGCTTTAATTATAAACATTACCTTTGCG,Distal Intergenic,8,90257946,90348126,90181,2,Tox3-202,161329,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,19,244579,ENSMUSG00000043668,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23103,cg19963038,0.0000339,0.00000907,3.736514741,0.000222084,gain,ns,-0.0000136,0.0000154,-0.879710552,0.379697557,neg,ns,0.021030488,0.004515841,4.657047768,0.00000477,pos,ns,5.321928289,-0.000436634,0.000155299,-2.811560615,0.005244278,neg,ns,0.313618763,Rnf220,Rnf220_Intron,4,117302429,117302478,117302477,117302478,50,+,TGCCCGGGAATAAACCATCATCACCAGCCGCCTTTGTAAGTTACACTTCG,"Intron (Rnf220-201/Rnf220, intron 3 of 14)",4,117271463,117497052,225590,2,Rnf220-201,194574,Rnf220-201;Rnf220-202;Rnf220-208;Rnf220-207,Rnf220;Rnf220;Rnf220;Rnf220,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
316,cg05043185,0.000000513,0.00000446,0.115092173,0.908446576,gain,ns,-0.00000667,0.00000758,-0.879627498,0.379742492,neg,ns,-0.003022661,0.002220523,-1.361238378,0.174426991,neg,ns,0.758386312,-0.000122545,0.0000764,-1.604751147,0.109566807,neg,ns,0.780792519,Cnih2,Cnih2_threeUTR,19,5093957,5094006,5094005,5094006,50,-,CCAGGGTCACCCACTCTGCTGCACACAGAAACATCAGACAGAAGAGGCCG,3' UTR,19,5092868,5098521,5654,2,Cnih2-201,4515,Cnih2-201;Cnih2-202;Yif1a-205;Yif1a-206;Yif1a-201;Yif1a-202;Yif1a-204;Yif1a-203,Cnih2;Cnih2;Yif1a;Yif1a;Yif1a;Yif1a;Yif1a;Yif1a,0;0;5419;5412;5412;5402;5397;5029,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,4,12794,ENSMUSG00000024873,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14977,cg07785910,0.00000108,0.00000663,0.163315158,0.870376716,gain,ns,-0.00000991,0.0000113,-0.879624161,0.379744298,neg,ns,0.00117089,0.003299747,0.35484247,0.72294889,pos,ns,0.140892405,-0.000149598,0.000113478,-1.318298531,0.188376937,neg,ns,0.894281249,Slc14a2,Slc14a2_Intron,18,78280541,78280590,78280541,78280542,50,+,CGTCACATGTAATTAAAAGATCCCAAAGCCATTGGAATGTAATGGATTTG,"Intron (Slc14a2-206/Slc14a2, intron 3 of 21)",18,78146148,78596942,450795,2,Slc14a2-206,316352,Slc14a2-206;Slc14a2-203,Slc14a2;Slc14a2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,12,27411,ENSMUSG00000024552,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12371,cg00750525,-0.00000597,0.00000625,-0.955375812,0.340132088,loss,ns,-0.00000934,0.0000106,-0.879309461,0.379914592,neg,ns,-0.003267375,0.00311112,-1.05022471,0.294432834,neg,ns,0.53101376,0.0000508,0.000106991,0.474933852,0.635168543,pos,ns,0.841704572,Klf7,Klf7_Intron,1,64060833,64060882,64060833,64060834,50,+,CGGAGGCCTGCTCCTTCCAGGGCAAGCATTATCATGAATAATTAAAGCCA,"Intron (Klf7-202/Klf7, intron 2 of 3)",1,64029447,64121491,92045,2,Klf7-202,60609,Klf7-202;Klf7-201,Klf7;Klf7,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,21,93691,ENSMUSG00000025959,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
818,cg17082219,-0.0000164,0.00000538,-3.050551851,0.0024815,loss,ns,-0.00000804,0.00000915,-0.879224729,0.379960451,neg,ns,-0.000177452,0.002679653,-0.066221983,0.947243782,neg,ns,0.023538237,0.0000276,0.0000922,0.299876585,0.76447227,pos,ns,0.91756005,1810013L24Rik,1810013L24Rik_Exon,16,8843027,8843076,8843027,8843028,50,+,CGCAATAAGGATGTGTTGGCTTGGGTTAAAAAACGCAGAAGAACTATTCG,"Exon (1810013L24Rik-201/1810013L24Rik, exon 3 of 4)",16,8830100,8858922,28823,1,1810013L24Rik-201,12927,1810013L24Rik-201;1810013L24Rik-202,1810013L24Rik;1810013L24Rik,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,18,19,69053,ENSMUSG00000022507,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16450,cg16933254,0.00000677,0.00000203,3.343902671,0.00092744,gain,ns,-0.00000302,0.00000344,-0.87904698,0.380056664,neg,ns,0.001166615,0.001008034,1.157317763,0.248033509,pos,ns,0.605489643,0.0000165,0.0000347,0.475844063,0.634520629,pos,ns,0.948351257,Ric8b,Ric8b_Exon,10,85015112,85015161,85015160,85015161,50,+,TGGGACAATAACGCCTTTGGAGGAAGCACTCAACCAGTACTCTGTCATCG,"Exon (Ric8b-201/Ric8b, exon 10 of 10)",10,84917616,85016447,98832,1,Ric8b-201,97496,Ric8b-201;Ric8b-202;Ric8b-205;Ric8b-204,Ric8b;Ric8b;Ric8b;Ric8b,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,11,14,237422,ENSMUSG00000035620,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25048,cg09117030,0.00000784,0.0000047,1.668194556,0.09628681,gain,ns,0.00000702,0.00000799,0.879046001,0.380057194,pos,ns,0.003107266,0.002340333,1.327702796,0.185253141,pos,ns,0.73223442,-0.0000743,0.0000805,-0.922650297,0.356907011,neg,ns,0.623762863,Ptpru,Ptpru_Exon,4,131820719,131820768,131820767,131820768,50,-,TGGGCCAGAAAGTGCTGACAGCCAGCTCAGCCTGGTGCCACTGACGGCCG,"Exon (Ptpru-203/Ptpru, exon 3 of 30)",4,131768457,131838288,69832,2,Ptpru-203,17520,Ptpru-203;Ptpru-201;Ptpru-205;Ptpru-202,Ptpru;Ptpru;Ptpru;Ptpru,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,19273,ENSMUSG00000028909,conserved gene and region,4,131820763,131820825,63,*,63,7,0.682539683,0.98,0.111111111,0.0000065,CpGisland,TRUE,U11,Tr-P
18772,cg23414911,-0.00000811,0.00000294,-2.759327034,0.006136455,loss,ns,0.00000439,0.00000499,0.878968415,0.380099195,pos,ns,0.003301884,0.00146297,2.256973198,0.024705697,pos,ns,1.607202889,-0.000113403,0.0000503,-2.254027436,0.024892563,neg,ns,0.935230514,Bcl9,Bcl9_Intron,3,97265876,97265925,97265876,97265877,50,-,CGGCACTTCCTGCTCGGATATTACTCCCATGTTGGGATAATTACTGCTAA,"Intron (Bcl9-208/Bcl9, intron 1 of 3)",3,97216553,97297917,81365,2,Bcl9-208,31992,Bcl9-208,Bcl9,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,10,77578,ENSMUSG00000038256,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8894,cg19815143,-0.00000121,0.000000631,-1.90882672,0.057207707,loss,ns,0.000000943,0.00000107,0.878936614,0.380116412,pos,ns,0.0000471,0.000314221,0.150025402,0.880842136,pos,ns,0.055101918,-0.00000252,0.0000108,-0.23335867,0.815636919,neg,ns,0.978387675,Gbf1,Gbf1_Exon,19,46272541,46272590,46272589,46272590,50,-,CTATACCACCTCTGTGTTCAGGCACAAGATTTCTGCTTCCTTGTGGAGCG,"Exon (Gbf1-201/Gbf1, exon 29 of 40)",19,46152509,46286510,134002,1,Gbf1-201,120032,Gbf1-201;Gbf1-214;Gbf1-213;Gbf1-215;Gbf1-212;Gbf1-208,Gbf1;Gbf1;Gbf1;Gbf1;Gbf1;Gbf1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,18,107338,ENSMUSG00000025224,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5683,cg04949439,-0.0000421,0.00000817,-5.161558499,0.000000438,loss,yes,0.0000122,0.0000139,0.878922567,0.380124017,pos,ns,-0.000833158,0.004063941,-0.205012409,0.837696976,neg,ns,0.076913052,-0.000310077,0.000139759,-2.218662144,0.027233785,neg,ns,0.85906058,Kirrel3,Kirrel3_Intron,9,34540639,34540688,34540639,34540640,50,-,CGTGGTAGGTATTATACTTTAAGTTGATTACAAAAAGCATTTATTGAGGG,"Intron (Kirrel3-202/Kirrel3, intron 2 of 16)",9,34486126,35035280,549155,1,Kirrel3-202,54513,Kirrel3-202;Kirrel3-206;Kirrel3-209;Kirrel3-201;Kirrel3-208;Kirrel3-205,Kirrel3;Kirrel3;Kirrel3;Kirrel3;Kirrel3;Kirrel3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,21,67703,ENSMUSG00000032036,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4818,cg18645778,-0.0000222,0.00000823,-2.694204727,0.007440109,loss,ns,-0.0000123,0.000014,-0.87889928,0.380136624,neg,ns,-0.008899715,0.004094039,-2.173823046,0.030474865,neg,ns,1.516058207,0.0000479,0.000140794,0.340326536,0.733841134,pos,ns,0.649182431,Dpysl5,Dpysl5_threeUTR,5,30799324,30799373,30799324,30799325,50,+,CGTTGTGTTCTGGTGCAGGTTTGTATTAAACTGTAGCTACTTCTCACTTG,3' UTR,5,30711564,30799375,87812,1,Dpysl5-203,87760,Dpysl5-203;Dpysl5-201;Dpysl5-207;Dpysl5-205;Dpysl5-206,Dpysl5;Dpysl5;Dpysl5;Dpysl5;Dpysl5,0;0;11134;7325;5604,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,2,65254,ENSMUSG00000029168,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15626,cg24066382,-0.0000157,0.00000431,-3.640581248,0.000318645,loss,ns,-0.00000644,0.00000732,-0.878898279,0.380137166,neg,ns,-0.00658258,0.002145874,-3.067552031,0.002348555,neg,ns,2.629199345,0.0000761,0.0000738,1.030943912,0.303370776,pos,ns,0.901503908,Gm4936,Gm4936_Intergenic_downstream,13,82317412,82317461,82317412,82317413,50,-,CGGAGGTCCAATTGTAGTATCTAATATTAGAAATAGAGACGCCTCCAATG,Distal Intergenic,13,82378785,82379643,859,2,Gm4936-201,62231,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,3,238756,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7012,cg18131863,-0.00000526,0.00000383,-1.372890558,0.170778666,loss,ns,-0.00000572,0.00000651,-0.878806527,0.380186843,neg,ns,-0.000967842,0.00190852,-0.507116569,0.612433573,neg,ns,0.21294101,-0.0000531,0.0000656,-0.809314696,0.418954887,neg,ns,0.975803603,Lsamp,Lsamp_Intron,16,40557998,40558047,40558046,40558047,50,+,GACTTGTCAGAGGCGCCAGGGTCCCGACATGCACCATTACTGACGGATCG,"Intron (Lsamp-207/Lsamp, intron 1 of 2)",16,39984361,40979709,995349,1,Lsamp-207,573637,Lsamp-207;Lsamp-206;Lsamp-208;Lsamp-210;Lsamp-209,Lsamp;Lsamp;Lsamp;Lsamp;Lsamp,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,23,268890,ENSMUSG00000061080,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16562,cg20747487,0.00000321,0.00000313,1.025580705,0.305888864,gain,ns,-0.00000468,0.00000533,-0.878752974,0.380215839,neg,ns,0.000656056,0.001560074,0.420528507,0.674390768,pos,ns,0.171088384,-0.0000635,0.0000537,-1.183863826,0.237373941,neg,ns,0.038186137,Camkmt,Camkmt_Intron,17,85455125,85455174,85455173,85455174,50,+,TTAACTGTGAAATTTTATTTCCGTTAAAAAGCAAGCCTGTAATCAAAACG,"Intron (Camkmt-201/Camkmt, intron 10 of 10)",17,85090552,85458588,368037,1,Camkmt-201,364573,Camkmt-201,Camkmt,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,41,44,73582,ENSMUSG00000071037,conserved gene and region,17,85455146,85455300,155,*,155,12,0.548387097,1.036789298,0.077419355,0.000000036,CpGisland,TRUE,U13,Hc-P
18370,cg12545634,-0.00000854,0.00000664,-1.286723451,0.199150723,loss,ns,0.00000991,0.0000113,0.878710417,0.380238883,pos,ns,-0.001954373,0.003304506,-0.591426581,0.554665649,neg,ns,0.25596873,0.0000915,0.000113642,0.805265744,0.421283547,pos,ns,0.083960457,Otp,Otp_fiveUTR,13,94875676,94875725,94875724,94875725,50,+,CTATATCGTATAGCTTATAGCTTATATCTATTTTAAATAACTTAAAGCCG,Promoter (<=1kb),13,94875602,94885130,9529,1,Otp-201,74,Otp-201,Otp,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,34,18420,ENSMUSG00000021685,conserved gene and region,13,94875724,94875846,123,*,123,11,0.658536585,0.828029376,0.089430894,3.56E-08,CpGisland,TRUE,U13,Hc-P
14842,cg20480274,0.000114174,0.0000136,8.423710264,1.38E-15,gain,yes,-0.0000202,0.000023,-0.878707749,0.380240328,neg,ns,-0.006437028,0.006745906,-0.954212432,0.340719585,neg,ns,0.467602902,0.000453085,0.000231991,1.953027216,0.051715873,pos,ns,0.423203512,Sez6,Sez6_Intron,11,77948091,77948140,77948139,77948140,50,+,TAAACAGGGCTCCCTCCGATGTCTATTTGCACAGCTTAAGAGCTAATGCG,"Intron (Sez6-202/Sez6, intron 1 of 16)",11,77930800,77979048,48249,1,Sez6-202,17291,Sez6-202;Sez6-207;Sez6-205;Sez6-201;Sez6-209;Sez6-204,Sez6;Sez6;Sez6;Sez6;Sez6;Sez6,0;0;0;0;0;-3165,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,9,20370,ENSMUSG00000000632,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21687,cg10243707,-0.00000829,0.00000537,-1.54267057,0.123930885,loss,ns,0.00000802,0.00000913,0.87847757,0.380364981,pos,ns,0.005144179,0.002675044,1.923025755,0.055392667,pos,ns,1.256547726,-0.000160786,0.000092,-1.747781545,0.08149193,neg,ns,0.864358654,Zfhx3,Zfhx3_Intron,8,108838926,108838975,108838926,108838927,50,-,CGTGTCACTGAGCGCTTCATTCATGCAGATAATTGAGAATTGACAGTGTC,"Intron (Zfhx3-204/Zfhx3, intron 9 of 15)",8,107942644,108961630,1018987,1,Zfhx3-204,896282,Zfhx3-204;Zfhx3-201,Zfhx3;Zfhx3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,114,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7004,cg12811115,-0.00000703,0.00000252,-2.785426933,0.005674782,loss,ns,0.00000376,0.00000428,0.878467429,0.380370474,pos,ns,0.000559927,0.001255347,0.446033907,0.655884124,pos,ns,0.183172881,0.00000113,0.0000432,0.026137257,0.979164678,pos,ns,0.954281831,Gm7382,Gm7382_Promoter,15,40533683,40533732,40533731,40533732,50,-,TCCTCTCCCTTCGTTTGCTGATTATGTGAGCCGGGCTCCTTTGCTAGCCG,Promoter (3-4kb),15,40537321,40538425,1105,1,Gm7382-201,-3638,Gm7382-201,Gm7382,-3589,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,17,22,664872,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15859,cg16310491,0.0000893,0.0000148,6.045141084,4.28E-09,gain,yes,0.000022,0.0000251,0.87838092,0.380417329,pos,ns,0.012496099,0.007350622,1.700005585,0.090132886,pos,ns,1.045116721,-0.000161535,0.000252787,-0.639015411,0.523284771,neg,ns,0.469351412,Gm6411,Gm6411_Intron,13,83728006,83728055,83728006,83728007,50,-,CGTGTAGCCATCTGACCACTTTTTATTGGGTGACATATCATATGAGCACT,"Intron (C130071C03Rik-201/C130071C03Rik-201, intron 1 of 3)",13,83761132,83762335,1204,2,Gm6411-201,34329,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,36,623241,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
22292,cg19025573,-0.00000281,0.00000454,-0.620002538,0.535711584,loss,ns,0.00000677,0.00000771,0.878354361,0.380431715,pos,ns,0.002327423,0.002258522,1.030507117,0.303575337,pos,ns,0.517733514,-0.0000554,0.0000777,-0.713374882,0.476150499,neg,ns,0.928797345,Crybb2,Crybb2_Promoter,5,113069783,113069832,113069783,113069784,50,+,CGGGTCAGCAAATGCCCACAGACATTGTGTCTCTGCACAATAATGTCATT,Promoter (<=1kb),5,113058258,113070117,11860,2,Crybb2-202,285,Crybb2-202;Crybb2-201;Crybb2-205;Crybb2-203;Crybb2-204,Crybb2;Crybb2;Crybb2;Crybb2;Crybb2,0;-1017;-1326;-1012;-289,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,1,1,12961,ENSMUSG00000042240,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14623,cg26609729,-0.00000403,0.00000222,-1.819032653,0.069871109,loss,ns,-0.00000331,0.00000377,-0.878331469,0.380444115,neg,ns,0.000876713,0.001103542,0.79445406,0.427538908,pos,ns,0.369024356,-0.0000583,0.000038,-1.537452443,0.125202579,neg,ns,0.959679372,Ttn,Ttn_Intron,2,76920620,76920669,76920668,76920669,50,-,AAACGCAACACCATGCTCTGTTTAAAAGATTCTGACACGAAAATCGTTCG,"Intron (Ttn-201/Ttn, intron 44 of 190)",2,76703980,76982455,278476,2,Ttn-201,61786,Ttn-201;Ttn-203;Ttn-205;Ttn-204;Ttn-211;Ttn-202,Ttn;Ttn;Ttn;Ttn;Ttn;Ttn,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,12,22138,ENSMUSG00000051747,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6920,cg10355209,-0.0000255,0.0000312,-0.816610509,0.414778131,loss,ns,0.0000465,0.000053,0.878326928,0.380446574,pos,ns,0.032089265,0.015513711,2.068445407,0.039427082,pos,ns,1.404205364,-0.00148417,0.000533515,-2.781869784,0.005735793,neg,ns,0.676175293,Gm5195,Gm5195_Intergenic_upstream,13,39552791,39552840,39552839,39552840,50,-,GAGATGCAATTTTCTGGCCTTATATGCAGTTGTAACAAAAGTCAGAGACG,Distal Intergenic,13,39757308,39757967,660,1,Gm5195-201,-204517,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,4,382747,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17333,cg05146658,-0.00000344,0.00000175,-1.971160803,0.04959467,loss,ns,-0.00000261,0.00000297,-0.878171352,0.380530852,neg,ns,-0.000213324,0.000869551,-0.245326863,0.806365681,neg,ns,0.093467964,-0.00000749,0.0000299,-0.250537543,0.80233764,neg,ns,0.959058277,Agap1,Agap1_Intron,1,89751143,89751192,89751191,89751192,50,+,CAAAGGTTTGATCTAATGGGCTCAGTCATTTTTCCTTTGAGTGACAGACG,"Intron (Agap1-201/Agap1, intron 11 of 17)",1,89454806,89897617,442812,1,Agap1-201,296337,Agap1-201;Agap1-204;Agap1-202,Agap1;Agap1;Agap1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,29,347722,ENSMUSG00000055013,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12982,cg00410898.1,-0.000002,0.000002,-0.998170593,0.318975137,loss,ns,-0.00000299,0.0000034,-0.878110556,0.380563789,neg,ns,-0.001916931,0.0009961,-1.924436796,0.055214959,neg,ns,1.257943244,0.0000475,0.0000343,1.385271869,0.166965307,pos,ns,0.066625568,Stc1,Stc1_Promoter,14,69029089,69029138,69029089,69029090,50,+,CGGCTATAAAATCCCTGGGTGCAGCTCTTGGGCCCCCAGTTTGCAAAAGC,Promoter (<=1kb),14,69029238,69041804,12567,1,Stc1-201,-100,Stc1-201,Stc1,0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,5,9,20855,ENSMUSG00000014813,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
26113,cg13625395,-0.00000348,0.0000067,-0.518707668,0.604334677,loss,ns,-0.00000999,0.0000114,-0.877974263,0.380637634,neg,ns,-0.000211121,0.003334702,-0.063310171,0.949560319,neg,ns,0.022477442,-0.000139394,0.00011468,-1.2155013,0.225099817,neg,ns,0.91745588,Gm2505,Gm2505_Intergenic_downstream,3,143982795,143982844,143982843,143982844,50,-,GAGGGAATAATTTAGATTTTCTTCCATCCCTGTCAGAAGTTGAACAGACG,Distal Intergenic,3,143872995,143873819,825,1,Gm2505-201,109849,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,37,100039938,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10782,cg17357006,0.00000441,0.00000247,1.785975494,0.075080549,gain,ns,-0.00000368,0.00000419,-0.877964714,0.380642808,neg,ns,-0.000541606,0.001228494,-0.440869624,0.659614679,neg,ns,0.180709688,0.0000814,0.0000422,1.927768112,0.054797305,pos,ns,0.949260851,Vti1a,Vti1a_Intron,19,55391972,55392021,55391972,55391973,50,+,CGAGATGTGGTTTACATATTGGGGAGACAATTGGGAGCTTATTTGCGCTT,"Intron (Vti1a-206/Vti1a, intron 5 of 7)",19,55316295,55577001,260707,1,Vti1a-206,75677,Vti1a-206;Vti1a-202;Vti1a-201;Vti1a-203,Vti1a;Vti1a;Vti1a;Vti1a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,32,53611,ENSMUSG00000024983,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22580,cg25304096,0.00000318,0.00000444,0.716601101,0.47415978,gain,ns,0.00000663,0.00000755,0.877902416,0.380676565,pos,ns,0.007387368,0.002211942,3.339765996,0.000940873,pos,ns,3.02646909,-0.000254779,0.0000761,-3.349339422,0.000910058,neg,ns,0.887068378,Rpl19-ps10,Rpl19-ps10_Intergenic_downstream,7,115294693,115294742,115294693,115294694,50,-,CGTGTGCGCAAACCTGACATTAATAAGCTACAAGAGATTACATGATTTAG,Distal Intergenic,7,115172056,115172385,330,1,Rpl19-ps10-201,122686,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,29,668472,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27087,cg01090334,-0.0000208,0.00000876,-2.376660625,0.018077079,loss,ns,-0.0000131,0.0000149,-0.877831247,0.38071513,neg,ns,-0.008283266,0.004359644,-1.899986872,0.058362599,neg,ns,1.233865373,-0.0000488,0.000149928,-0.325702662,0.744869066,neg,ns,0.826058639,Cnksr2,Cnksr2_Exon,X,157919807,157919856,157919855,157919856,50,+,CTCTGAGGTCGCTTTTTCAAAGTTAAGATAACACCACTCGGGTCCTCTCG,"Exon (Cnksr2-201/Cnksr2, exon 9 of 22)",20,157821436,158043294,221859,2,Cnksr2-201,123438,Cnksr2-201;Cnksr2-202,Cnksr2;Cnksr2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,11,245684,ENSMUSG00000025658,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13984,cg09995750,6.08E-08,0.00000545,0.011158218,0.991104392,gain,ns,0.00000813,0.00000926,0.877687773,0.380792885,pos,ns,0.004880136,0.002712449,1.799162117,0.072965488,pos,ns,1.136882506,-0.000138274,0.0000933,-1.482335096,0.139266975,neg,ns,0.923188952,Mecp2,Mecp2_threeUTR,X,74034284,74034333,74034332,74034333,50,+,TTCGGAGCTTCGTGGGAACCCTATGTGCTGAGCCCACTTTAAAACAAGCG,3' UTR,20,74026592,74085669,59078,2,Mecp2-202,51336,Mecp2-202;Mecp2-205;Mecp2-201;Mecp2-203;Mecp2-204,Mecp2;Mecp2;Mecp2;Mecp2;Mecp2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,10,17257,ENSMUSG00000031393,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17371,cg20085260,0.00000955,0.0000118,0.808629001,0.419348712,gain,ns,0.0000176,0.0000201,0.877559083,0.380862636,pos,ns,0.014662421,0.005877888,2.494505054,0.013133675,pos,ns,1.881613734,-0.000588229,0.00020214,-2.910005874,0.003875804,neg,ns,0.40392532,Gbx2,Gbx2_Intergenic_downstream,1,89925568,89925617,89925616,89925617,50,-,TTGTAACAACAAATATAGTGATGTCAAAACCCAACCTTGGATTAAAGCCG,Distal Intergenic,1,89927966,89929185,1220,2,Gbx2-202,3617,Gbx2-201;Gbx2-202,Gbx2;Gbx2,0;3568,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,13,14472,ENSMUSG00000034486,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
20822,cg17133703,0.0000735,0.0000115,6.410429627,5.40E-10,gain,yes,0.0000171,0.0000195,0.877501556,0.380893819,pos,ns,0.013924048,0.005704576,2.440856074,0.015211925,pos,ns,1.817815822,-0.0004008,0.00019618,-2.043021717,0.041895684,neg,ns,0.330193321,Kcnd3,Kcnd3_Intron,3,105559639,105559688,105559687,105559688,50,-,GGTTTAAAATAATCTTTGTCTTCTCCCTTTGTCCGCCCCCAGCACAGCCG,"Intron (Kcnd3-202/Kcnd3, intron 2 of 6)",3,105452330,105674002,221673,1,Kcnd3-202,107309,Kcnd3-202;Kcnd3-204;Kcnd3-203;Kcnd3-201,Kcnd3;Kcnd3;Kcnd3;Kcnd3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,9,56543,ENSMUSG00000040896,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12103,cg16461475,-0.00000124,0.00000318,-0.390053667,0.696764726,loss,ns,-0.00000475,0.00000541,-0.877397537,0.380950207,neg,ns,0.003692459,0.001584519,2.330334846,0.020429905,pos,ns,1.689733645,-0.000155425,0.0000545,-2.852278319,0.004632346,neg,ns,0.9316491,Pias1,Pias1_Exon,9,62952071,62952120,62952119,62952120,50,-,CAGGACTACAGCCAGCCTTTAGCAAATGCAGGGCTTTTGTGAGAAGTTCG,"Exon (Pias1-201/Pias1, exon 2 of 14)",9,62878368,62980879,102512,2,Pias1-201,28759,Pias1-201;Pias1-202;Pias1-205;Pias1-203,Pias1;Pias1;Pias1;Pias1,0;0;0;-75,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,12,56469,ENSMUSG00000032405,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15828,cg13011653,-0.0000219,0.0000107,-2.040446959,0.042152866,loss,ns,0.000016,0.0000182,0.877320583,0.380991926,pos,ns,-0.01206093,0.00534066,-2.258322041,0.024620541,neg,ns,1.608702413,0.0000869,0.000183665,0.473046225,0.636513104,pos,ns,0.791918774,Rpl28-ps2,Rpl28-ps2_Intergenic_upstream,3,83609486,83609535,83609534,83609535,50,-,TAAAACTTTATGGACCTAATAAAATTCCCAACATTCTCAGACACGGGTCG,Distal Intergenic,3,83686721,83687274,554,1,Rpl28-ps2-201,-77235,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,100042091,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9208,cg16800482,0.0000256,0.00000369,6.946441773,2.21E-11,gain,yes,-0.0000055,0.00000627,-0.877275426,0.381016409,neg,ns,0.00814075,0.001836229,4.433405727,0.0000129,pos,ns,4.889711856,-0.00011772,0.0000631,-1.864203958,0.063238121,neg,ns,0.918923515,Ezh2,Ezh2_threeUTR,6,47544549,47544598,47544597,47544598,50,+,TTCTCAGGAGGTTCAATATTTGGCTTCATCTTTATTGGTGTTTGACACCG,3' UTR,6,47530139,47595030,64892,2,Ezh2-201,50432,Ezh2-214;Ezh2-201;Ezh2-203;Ezh2-204;Ezh2-202;Ezh2-210;Ezh2-207;Ezh2-206;Ezh2-208;Ezh2-209;Ezh2-215,Ezh2;Ezh2;Ezh2;Ezh2;Ezh2;Ezh2;Ezh2;Ezh2;Ezh2;Ezh2;Ezh2,-3814;0;0;0;0;-3840;0;0;0;9616;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,3,14056,ENSMUSG00000029687,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4261,cg04765320,0.0000256,0.0000069,3.707108628,0.000248272,gain,ns,0.0000103,0.0000117,0.877233185,0.381039312,pos,ns,0.008082808,0.003431972,2.35514981,0.019138184,pos,ns,1.718099268,-0.0000543,0.000118025,-0.460469552,0.645502057,neg,ns,0.061739707,Rfx3,Rfx3_fiveUTR,19,28011104,28011153,28011104,28011105,50,-,CGGTGACTATGGCGCTTGATTCACAAGGCAACGGTTGCTATAACTCACAA,Promoter (<=1kb),19,27768139,28011140,243002,2,Rfx3-208,0,Rfx3-201;Rfx3-208;Rfx3-204;Rfx3-205;Rfx3-207,Rfx3;Rfx3;Rfx3;Rfx3;Rfx3,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,15,19726,ENSMUSG00000040929,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
8072,cg00875779,0.00000222,0.00000503,0.442140274,0.658695998,gain,ns,-0.0000075,0.00000855,-0.877220242,0.381046329,neg,ns,-0.004818919,0.002503864,-1.924593121,0.055195301,neg,ns,1.258097893,0.0000539,0.0000861,0.625795208,0.531909729,pos,ns,0.765643888,Runx2,Runx2_Intron,17,44722625,44722674,44722673,44722674,50,+,TTGGACATAATTACACTTCATCAAAAGAAGCTTTCTTCATCTTCCATGCG,"Intron (Runx2-212/Runx2, intron 2 of 5)",17,44495987,44736176,240190,2,Runx2-212,13502,Runx2-212;Runx2-214;Runx2-203;Runx2-202;Runx2-213;Runx2-204;Runx2-210;Runx2-211;Runx2-207;Runx2-201;Runx2-209;Runx2-205;Runx2-206,Runx2;Runx2;Runx2;Runx2;Runx2;Runx2;Runx2;Runx2;Runx2;Runx2;Runx2;Runx2;Runx2,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,20,12393,ENSMUSG00000039153,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8981,cg10207321,-0.00000546,0.0000023,-2.371673298,0.018318378,loss,ns,0.00000343,0.00000391,0.87718106,0.381067574,pos,ns,0.003145786,0.001145333,2.746611813,0.006373461,pos,ns,2.195624699,-0.000144507,0.0000394,-3.668810351,0.000286756,neg,ns,0.104948571,Ttbk1,Ttbk1_threeUTR,17,46454994,46455043,46454994,46454995,50,+,CGGAGCAAGTGCAAAGGAAGCAGATGTTGGTCCCTGAGTTTTATTTTCGG,3' UTR,17,46442448,46487675,45228,2,Ttbk1-201,32632,Ttbk1-201;Ttbk1-203,Ttbk1;Ttbk1,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,7,106763,ENSMUSG00000015599,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3715,cg14924324,0.000049,0.0000157,3.11005039,0.00204436,gain,ns,-0.0000235,0.0000268,-0.876976221,0.381178652,neg,ns,0.029760709,0.007837965,3.796994494,0.000176193,pos,ns,3.754011813,-0.000634969,0.000269547,-2.355691332,0.019110814,neg,ns,0.418578962,Pou2f2,Pou2f2_Intron,7,25134761,25134810,25134809,25134810,50,+,AAGGAGACGTAGGGGGCTCCCCAGGGCCAGCGGGGCTGGTAACTGACACG,"Intron (Pou2f2-208/Pou2f2, intron 2 of 4)",7,25120618,25179726,59109,2,Pou2f2-208,44916,Pou2f2-203;Pou2f2-209;Pou2f2-201;Pou2f2-206;Pou2f2-204;Pou2f2-205;Pou2f2-202;Pou2f2-210;Pou2f2-208,Pou2f2;Pou2f2;Pou2f2;Pou2f2;Pou2f2;Pou2f2;Pou2f2;Pou2f2;Pou2f2,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,29,18987,ENSMUSG00000008496,mapped to different genes,7,25134752,25134975,224,*,224,23,0.629464286,1.037872683,0.102678571,4.08E-18,CpGisland,TRUE,U13,Hc-P
9795,cg06625233,0.000032,0.000006,5.335910518,0.000000184,gain,yes,-0.00000894,0.0000102,-0.876918283,0.381210073,neg,ns,0.001642453,0.002988121,0.549660699,0.582947878,pos,ns,0.234370274,0.00000428,0.000102761,0.041614865,0.966832513,pos,ns,0.070165122,Trps1,Trps1_fiveUTR,15,50889657,50889706,50889657,50889658,50,-,CGGCCAAAGCCATGAACCGTCTTCTGTTGTTTGCAGAGTTGATCTTGGAT,Promoter (<=1kb),15,50654752,50889691,234940,2,Trps1-202,0,Trps1-202;Trps1-206;Trps1-204;Trps1-205;Trps1-201;Trps1-208,Trps1;Trps1;Trps1;Trps1;Trps1;Trps1,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,36,83925,ENSMUSG00000038679,conserved gene and region,15,50889495,50889675,181,*,181,26,0.718232044,1.135617761,0.143646409,1.20E-24,CpGisland,TRUE,U1,Pr-A
21091,cg06106091,-0.00000238,0.00000242,-0.981940589,0.326894837,loss,ns,0.00000361,0.00000412,0.876869567,0.381236495,pos,ns,0.004052513,0.001205719,3.361074927,0.000873567,pos,ns,3.058703994,-0.000145024,0.0000415,-3.497539939,0.00053823,neg,ns,0.94668866,Barhl2,Barhl2_Intergenic_downstream,5,106421113,106421162,106421161,106421162,50,+,GGATAAAACATTAGTGTATCAGATGTGACAAATCAGATGTTCATCTTCCG,Distal Intergenic,5,106452523,106458166,5644,2,Barhl2-201,37004,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,27,104382,ENSMUSG00000034384,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16247,cg22951451,0.0000687,0.0000158,4.347549962,0.0000187,gain,ns,-0.0000235,0.0000268,-0.876816687,0.381265176,neg,ns,0.043621784,0.007861065,5.54909315,6.17E-08,pos,ns,7.209983664,-0.001531916,0.000270341,-5.666599731,3.33E-08,neg,yes,0.395133192,Polr3b,Polr3b_Intron,10,84657899,84657948,84657899,84657900,50,+,CGTCTTGACTTCAGAGATTGCCTAATCCCAGCTGTTCTGATAATGTAATT,"Intron (Polr3b-201/Polr3b, intron 12 of 27)",10,84622292,84727178,104887,1,Polr3b-201,35607,Polr3b-201;Polr3b-202;Polr3b-204,Polr3b;Polr3b;Polr3b,0;35606;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,5,70428,ENSMUSG00000034453,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11217,cg08180952,-0.00000541,0.00000409,-1.32330754,0.186708279,loss,ns,-0.00000609,0.00000695,-0.876567571,0.38140031,neg,ns,-0.001530362,0.002035987,-0.751656143,0.452828143,neg,ns,0.34406659,-0.000117772,0.00007,-1.682039741,0.093568116,neg,ns,0.023342084,Sin3a,Sin3a_fiveUTR,9,57076352,57076401,57076400,57076401,50,-,GTGGGCGGGATTTCCCGGGTAACAGAGAAGCGGCCGCGGCGGTAGAGGCG,Promoter (<=1kb),9,57076376,57128364,51989,1,Sin3a-208,0,Sin3a-209;Sin3a-204;Sin3a-208;Sin3a-206;Sin3a-202;Sin3a-207,Sin3a;Sin3a;Sin3a;Sin3a;Sin3a;Sin3a,0;0;0;0;-227;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,4,20466,ENSMUSG00000042557,conserved gene and region,9,57076124,57076410,287,*,287,26,0.634146342,0.974660397,0.090592335,5.97E-19,CpGisland,TRUE,U1,Pr-A
6122,cg00485681,0.0000151,0.00000246,6.135515415,2.59E-09,gain,yes,-0.00000367,0.00000419,-0.876524563,0.381423642,neg,ns,0.0000434,0.001226544,0.035358422,0.971816695,pos,ns,0.012415645,-0.0000537,0.0000422,-1.272643525,0.204098229,neg,ns,0.094052039,Lhx6,Lhx6_Promoter,2,36104897,36104946,36104945,36104946,50,-,GCTTTTTGAGAAATTCCTCCAACATTTGCATAATGTGTTCCCGCTTTCCG,Promoter (<=1kb),2,36081953,36105271,23319,2,Lhx6-201,325,Lhx6-202;Lhx6-204;Lhx6-201;Lhx6-205;Lhx6-203;Lhx6-208;Lhx6-209;Lhx6-207,Lhx6;Lhx6;Lhx6;Lhx6;Lhx6;Lhx6;Lhx6;Lhx6,0;0;0;0;0;0;-1305;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,3,9,16874,ENSMUSG00000026890,conserved gene and region,2,36104938,36105370,433,*,433,45,0.755196305,0.744270435,0.103926097,2.94E-35,CpGisland,TRUE,U3,Pr-B
10729,cg06308115,-0.000000762,0.00000184,-0.413761126,0.679335158,loss,ns,0.00000274,0.00000313,0.876487661,0.381443663,pos,ns,0.0002935,0.000916349,0.32029321,0.74896185,pos,ns,0.125540303,0.0000152,0.0000315,0.482452521,0.629825001,pos,ns,0.962825819,Zfp462,Zfp462_Exon,4,55016943,55016992,55016943,55016944,50,-,CGGCCGGGGGGATACCATTGCAGTCAATGTGACAGAGTCCTGATGTCCAT,"Exon (Zfp462-201/Zfp462, exon 3 of 11)",4,54947976,55083563,135588,1,Zfp462-203,68967,Zfp462-203;Zfp462-201;Zfp462-202,Zfp462;Zfp462;Zfp462,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,23,242466,ENSMUSG00000060206,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14093,cg06662679,0.0000754,0.000013,5.807008582,1.57E-08,gain,yes,-0.0000193,0.0000221,-0.876314446,0.381537648,neg,ns,-0.009275516,0.006461903,-1.435415647,0.152176879,neg,ns,0.817651327,0.000571279,0.000222224,2.57073252,0.01061482,pos,ns,0.643604176,Evx2,Evx2_Promoter,2,74659661,74659710,74659661,74659662,50,+,CGAATGACGCTGTTCGAATAATCATTTATTGTAACAGGTTTATAAGCAAA,Promoter (<=1kb),2,74652991,74659557,6567,2,Evx2-201,-104,Evx2-201;Evx2-202,Evx2;Evx2,0;-242,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,9,35,14029,ENSMUSG00000001815,conserved gene and region,2,74659459,74659676,218,*,218,14,0.5,1.031778229,0.064220184,2.09E-08,CpGisland,TRUE,U13,Hc-P
1228,cg18385808,0.000161388,0.0000173,9.332578548,2.05E-18,gain,yes,-0.0000257,0.0000294,-0.876101646,0.381653131,neg,ns,0.045287905,0.008606885,5.261823141,0.000000267,pos,ns,6.573980832,-0.00106986,0.00029599,-3.614512061,0.000351031,neg,ns,0.194499782,Bcor,Bcor_Intron,X,12077184,12077233,12077232,12077233,50,+,CCTATTTTTATCTTGTCTAATCCTAAACTGGGCGGGGAGCACAGGCGTCG,"Intron (Bcor-202/Bcor, intron 1 of 14)",20,12036740,12080553,43814,2,Bcor-202,3320,Bcor-202;Bcor-203;Bcor-204;Bcor-206;Bcor-201;Bcor-207;Bcor-205,Bcor;Bcor;Bcor;Bcor;Bcor;Bcor;Bcor,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,56,74,71458,ENSMUSG00000040363,conserved gene and region,X,12077216,12077550,335,*,335,28,0.671641791,0.755476804,0.08358209,2.26E-19,CpGisland,TRUE,NA,NRS
25438,cg24190529,-0.0000257,0.00000996,-2.580721065,0.010318973,loss,ns,0.0000148,0.0000169,0.876081773,0.381663917,pos,ns,0.007448454,0.004959164,1.501957538,0.134125983,pos,ns,0.872487082,-0.000308046,0.000170545,-1.806241708,0.071850327,neg,ns,0.812843492,Kdm1a,Kdm1a_Exon,4,136582076,136582125,136582076,136582077,50,+,CGTCTTGAAGTCCTCCTGCTTGCCCTGTGGAAGGAAAGAGGAGAACTCAG,"Exon (Kdm1a-202/Kdm1a, exon 3 of 20)",4,136550540,136602723,52184,2,Kdm1a-203,20598,Gm12987-201;Kdm1a-203;Kdm1a-202;Kdm1a-201;Kdm1a-208,Gm12987;Kdm1a;Kdm1a;Kdm1a;Kdm1a,2535;0;0;0;-4918,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,99982,ENSMUSG00000036940,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6735,cg26025291,0.0000663,0.0000137,4.849267579,0.00000196,gain,ns,-0.0000204,0.0000232,-0.875926864,0.381747998,neg,ns,0.014906475,0.006809693,2.18900844,0.02934178,pos,ns,1.532513543,-0.000736051,0.000234185,-3.143033938,0.00183378,neg,ns,0.250083929,Dennd1a,Dennd1a_Intron,2,38221142,38221191,38221190,38221191,50,+,ATTTGTTAGGTTAAAGGTTAAATTGCTGACCTGTGCCCTCCTGCTTAGCG,"Intron (Dennd1a-201/Dennd1a, intron 2 of 21)",2,37798991,38287375,488385,2,Dennd1a-201,66184,Dennd1a-201;Dennd1a-207;Dennd1a-210;Dennd1a-204;Dennd1a-209;Dennd1a-208;Dennd1a-205,Dennd1a;Dennd1a;Dennd1a;Dennd1a;Dennd1a;Dennd1a;Dennd1a,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,46,227801,ENSMUSG00000035392,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7462,cg18141557,0.000238007,0.000019,12.55054314,1.71E-29,gain,yes,-0.0000282,0.0000322,-0.875787554,0.381823622,neg,ns,0.018849803,0.009438526,1.99711301,0.046686788,pos,ns,1.330806,-0.000265921,0.00032459,-0.819250972,0.413272618,neg,ns,0.21119435,Pou3f3,Pou3f3_Exon,1,42697352,42697401,42697400,42697401,50,+,CAAGATGGTCCAGAGCGACTTCATGCAGGGGGCCATGGCCGCCAGCAACG,"Exon (Pou3f3-202/Pou3f3, exon 4 of 4)",1,42694925,42703176,8252,1,Pou3f3-202,2427,Pou3f3-202;Pou3f3-201,Pou3f3;Pou3f3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,37,18993,ENSMUSG00000045515,conserved gene and region,1,42696575,42698226,1652,*,1652,217,0.762106538,0.905802448,0.131355932,1.22E-192,CpGisland,TRUE,U3,Pr-B
25303,cg00528052,-0.00000159,0.00000172,-0.924514198,0.355937746,loss,ns,0.00000255,0.00000291,0.875782779,0.381826215,pos,ns,-0.000301434,0.000853923,-0.352998734,0.724329295,neg,ns,0.14006395,0.0000317,0.0000294,1.080597757,0.280716028,pos,ns,0.036451776,Kdm5b,Kdm5b_Exon,1,134560476,134560525,134560476,134560477,50,+,CGCTTTCATCCACAAGATCCGGCCCATAGCCGAGCAGACTGGCATCTGTA,Promoter (<=1kb),1,134560171,134635285,75115,1,Kdm5b-201,305,Kdm5b-201;Kdm5b-203;Kdm5b-202,Kdm5b;Kdm5b;Kdm5b,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,4,75605,ENSMUSG00000042207,conserved gene and region,1,134560061,134561382,1322,*,1322,138,0.734493192,0.797576266,0.104387292,4.13E-107,CpGisland,TRUE,U1,Pr-A
10606,cg24805210,0.00000815,0.00000661,1.233595626,0.218288109,gain,ns,0.00000983,0.0000112,0.875732765,0.381853367,pos,ns,0.002725722,0.003289417,0.828633641,0.407949271,pos,ns,0.389393839,-0.000234651,0.000113123,-2.074299874,0.038876535,neg,ns,0.863877512,Acin1,Acin1_Intron,14,54650923,54650972,54650971,54650972,50,+,AATAAATAATATTCTGCACATCAAATCACTTTCACCGGCCCCCACCCCCG,"Intron (4930579G18Rik-201/4930579G18Rik-201, intron 1 of 5)",14,54642161,54653616,11456,2,Acin1-208,2644,Acin1-208;Acin1-216;Acin1-202;Acin1-201;Acin1-219;Acin1-218;Acin1-221;Acin1-224;Acin1-203;Acin1-205;Acin1-211;Acin1-225;Acin1-207;Acin1-204;Acin1-226;Acin1-213;Acin1-214;Acin1-209;Acin1-220;Gm17606-201,Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Gm17606,0;0;0;0;0;0;0;0;0;0;-4876;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,22,56215,ENSMUSG00000022185,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15169,cg16161791,-0.0000172,0.00000698,-2.460008251,0.01443879,loss,ns,0.0000104,0.0000119,0.875689862,0.38187666,pos,ns,0.001999245,0.00347271,0.575701571,0.565234581,pos,ns,0.247771276,-0.000288594,0.000119426,-2.416508555,0.016247528,neg,ns,0.82173974,Kcnj4,Kcnj4_Intron,15,79500332,79500381,79500380,79500381,50,-,TTATTTCAATTACCATCTGAATTAAAAGTTTGAGCAGCGATCAGCCCACG,"Intron (Kcnj4-201/Kcnj4, intron 1 of 1)",15,79483714,79505241,21528,2,Kcnj4-201,4860,Kcnj4-201,Kcnj4,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,9,16520,ENSMUSG00000044216,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13177,cg17808963,-0.00000143,0.00000227,-0.630716065,0.528690889,loss,ns,-0.00000338,0.00000386,-0.875677257,0.381883504,neg,ns,-0.002285861,0.001129968,-2.02294339,0.043937048,neg,ns,1.357169124,0.0000852,0.0000389,2.193573054,0.029008382,pos,ns,0.944345042,Bbs5,Bbs5_threeUTR,2,69667113,69667162,69667113,69667114,50,+,CGTGAACCTGTATTTTCAGAAGAACTGGGGCTTGCAATAGAGAAATTGAA,3' UTR,2,69647171,69667318,20148,1,Bbs5-205,19942,Bbs5-205;Bbs5-201;Bbs5-202;Bbs5-206;Bbs5-203;Klhl41-201,Bbs5;Bbs5;Bbs5;Bbs5;Bbs5;Klhl41,0;0;0;11689;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,2,72569,ENSMUSG00000063145,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11859,cg16624401,-0.000000825,0.00000193,-0.428072503,0.66889558,loss,ns,-0.00000287,0.00000327,-0.875588815,0.381931524,neg,ns,-0.000717198,0.000958628,-0.748150285,0.45493671,neg,ns,0.342049017,0.0000578,0.000033,1.753692089,0.080471513,pos,ns,0.947451056,Ppargc1b,Ppargc1b_threeUTR,18,61298619,61298668,61298619,61298620,50,-,CGTAAACATATTGGAAGGGCCTTGTCTGAGGTATTGAGGTATTCCTCGAG,3' UTR,18,61298136,61400431,102296,2,Ppargc1b-202,101763,Ppargc1b-202;Ppargc1b-201,Ppargc1b;Ppargc1b,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,2,170826,ENSMUSG00000033871,conserved gene and region,18,61298557,61298620,64,*,64,8,0.53125,2.275555556,0.125,0.000000376,CpGisland,TRUE,NA,NRS
20495,cg07265990,-0.00000192,0.00000104,-1.848800361,0.065438673,loss,ns,0.00000155,0.00000177,0.875036044,0.382231739,pos,ns,0.00084735,0.000517647,1.63692765,0.102660302,pos,ns,0.988597462,0.00000595,0.0000178,0.334436592,0.738276282,pos,ns,0.971540585,Mier1,Mier1_Exon,4,103131040,103131089,103131040,103131041,50,-,CGAACATTAGAAGAGGAAGAAATGATGGAAGGAGAAACAAACTTCAGCTC,"Exon (Mier1-205/Mier1, exon 5 of 15)",4,103114395,103165754,51360,1,Mier1-205,16645,Mier1-205;Mier1-210;Mier1-214;Mier1-208;Mier1-201;Mier1-202;Mier1-204;Mier1-215;Mier1-206,Mier1;Mier1;Mier1;Mier1;Mier1;Mier1;Mier1;Mier1;Mier1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,Exon,2,4,71148,ENSMUSG00000028522,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22406,cg03556909,-0.0000567,0.0000114,-4.972236012,0.0000011,loss,yes,0.0000169,0.0000194,0.875010489,0.382245621,pos,ns,-0.01025825,0.00567318,-1.808201202,0.071544163,neg,ns,1.145425796,-0.0000184,0.0001951,-0.094233513,0.924984542,neg,ns,0.699428367,Kctd10,Kctd10_Exon,5,114374922,114374971,114374922,114374923,50,-,CGCCCGCTGAACATGGCCTTCAGCATGGTGTCCTGCTTGGTCAGCGTCTG,"Exon (Kctd10-202/Kctd10, exon 2 of 7)",5,114363567,114380508,16942,2,Kctd10-202,5537,Kctd10-202;Kctd10-206;Kctd10-201;Kctd10-205;Kctd10-207,Kctd10;Kctd10;Kctd10;Kctd10;Kctd10,0;0;0;-2780;-4715,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,330171,ENSMUSG00000001098,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
4408,cg10263169,0.0000153,0.00000247,6.192719396,1.88E-09,gain,yes,0.00000367,0.00000419,0.874968645,0.382268354,pos,ns,0.000571026,0.001228676,0.464748817,0.642437598,pos,ns,0.192169051,-0.0000145,0.0000423,-0.342875651,0.731924394,neg,ns,0.950492338,Brpf3,Brpf3_threeUTR,17,28817600,28817649,28817648,28817649,50,-,ATAGTTACCAACTGCATGAAGTATAATGCTAAAGACACAATTTTCCACCG,3' UTR,17,28801090,28839949,38860,1,Brpf3-201,16510,Brpf3-201;Brpf3-216;Brpf3-217;Brpf3-219;Brpf3-210;Brpf3-218;Brpf3-212;Brpf3-202;Brpf3-209;Brpf3-208;Brpf3-211;Brpf3-207,Brpf3;Brpf3;Brpf3;Brpf3;Brpf3;Brpf3;Brpf3;Brpf3;Brpf3;Brpf3;Brpf3;Brpf3,0;0;0;0;0;0;0;7941;0;0;-687;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,threeUTR,7,7,268936,ENSMUSG00000063952,conserved gene and region,17,28817648,28817781,134,*,134,10,0.649253731,0.708245243,0.074626866,0.00000101,CpGisland,TRUE,U10,Tr-S
4939,cg02848012,-0.00000848,0.00000538,-1.575394191,0.116185427,loss,ns,-0.000008,0.00000914,-0.874866959,0.3823236,neg,ns,-0.005681817,0.002677872,-2.121765949,0.034650392,neg,ns,1.460291844,0.000122758,0.0000921,1.332998414,0.183511136,pos,ns,0.848450246,Ass1,Ass1_Exon,2,31497899,31497948,31497899,31497900,50,-,CGTCGAAGAAAAAGATGAGATCAAGTTGAGGGGAAAAATTGTCTGATTTC,"Exon (Ass1-202/Ass1, exon 1 of 4)",2,31470207,31520672,50466,1,Ass1-201,27692,Ass1-201;Ass1-202;Ass1-204,Ass1;Ass1;Ass1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,9,11898,ENSMUSG00000076441,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26299,cg02526409,-0.000000485,0.000000776,-0.625017047,0.532419653,loss,ns,0.00000115,0.00000132,0.87465843,0.382436908,pos,ns,0.000385671,0.000386183,0.998675047,0.31873102,pos,ns,0.496575668,-0.000013,0.0000133,-0.982212816,0.32676095,neg,ns,0.97589288,Ralgapa2,Ralgapa2_Intron,2,146324433,146324482,146324433,146324434,50,-,CGAAATATGTTAAATTTCAAAGGACTTGGAAGCAATGCTGCCTGTAAGCT,"Intron (Ralgapa2-202/Ralgapa2, intron 37 of 40)",2,146239879,146512004,272126,2,Ralgapa2-202,187522,Ralgapa2-202;Ralgapa2-211;Ralgapa2-210;Ralgapa2-205;Ralgapa2-208,Ralgapa2;Ralgapa2;Ralgapa2;Ralgapa2;Ralgapa2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,26,241694,ENSMUSG00000037110,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11207,cg08250899,-0.00000231,0.00000318,-0.727557098,0.467433875,loss,ns,-0.00000472,0.0000054,-0.874610358,0.382463032,neg,ns,-0.000916699,0.001582694,-0.579201874,0.562873598,neg,ns,0.249589122,-0.0000398,0.0000544,-0.732141596,0.464635294,neg,ns,0.934818578,Slc25a21,Slc25a21_Intron,12,56998636,56998685,56998684,56998685,50,+,TTTATGTGTTTTCTCTCCCCGAATACTGACACATTTATATCCTTTCCCCG,"Intron (Slc25a21-201/Slc25a21, intron 1 of 9)",12,56712634,57197472,484839,2,Slc25a21-201,198787,Slc25a21-201;Slc25a21-205;Slc25a21-202,Slc25a21;Slc25a21;Slc25a21,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,7,217593,ENSMUSG00000035472,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9027,cg20230511,-0.0000288,0.00000922,-3.1272605,0.001931851,loss,ns,-0.0000137,0.0000157,-0.87456765,0.382486242,neg,ns,-0.018206297,0.004588104,-3.968152951,0.00009,neg,ns,4.045535138,0.000489171,0.000157785,3.100247097,0.002111118,pos,ns,0.728232127,Gm8863,Gm8863_Exon,9,46610278,46610327,46610326,46610327,50,+,GGTAACATCTTCAGGTTACCAGGGATGCAAGATCCAAACAAAAGTATTCG,"Exon (Gm48945-201/Gm48945-201, exon 1 of 2)",9,46713233,46714158,926,2,Gm8863-201,103831,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,20,667890,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26080,cg02203534,0.00000695,0.00000953,0.729473011,0.466263177,gain,ns,-0.0000142,0.0000162,-0.874434101,0.382558825,neg,ns,-0.002678784,0.004742139,-0.564889398,0.572557538,neg,ns,0.242180864,0.000189466,0.000163082,1.161786651,0.246215846,pos,ns,0.767824778,Pak3,Pak3_Exon,X,143713882,143713931,143713882,143713883,50,+,CGTCCATTACAGCCAGATCTCTATGGCTCACAGATGTGCCCAGGGAAGCT,"Exon (Pak3-201/Pak3, exon 4 of 16)",20,143518591,143797792,279202,1,Pak3-201,195291,Pak3-201;Pak3-207;Pak3-205;Pak3-209;Pak3-208;Pak3-204;Pak3-202;Pak3-203;Pak3-210,Pak3;Pak3;Pak3;Pak3;Pak3;Pak3;Pak3;Pak3;Pak3,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,9,18481,ENSMUSG00000031284,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18035,cg23398642,-3.44E-08,0.00000356,-0.009670462,0.992290428,loss,ns,0.00000529,0.00000605,0.874420318,0.382566316,pos,ns,-0.002386814,0.00177246,-1.346611177,0.179089192,neg,ns,0.746930623,-0.00000183,0.000061,-0.030051082,0.976045651,neg,ns,0.926263034,Pola1,Pola1_Intron,X,93377551,93377600,93377551,93377552,50,-,CGAGATGATGAGAAACAGTTGCTGTCAATTTGATTAGCCATTATATTTTT,"Intron (Pola1-201/Pola1, intron 35 of 36)",20,93304767,93632155,327389,2,Pola1-201,254555,Pola1-201,Pola1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,59,62,18968,ENSMUSG00000006678,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12509,cg17829391,0.00000481,0.0000165,0.290946278,0.771286966,gain,ns,0.0000246,0.0000281,0.874082504,0.382749956,pos,ns,0.020121957,0.008235255,2.443392039,0.015107493,pos,ns,1.820807613,-0.000479029,0.00028321,-1.691428435,0.091759974,neg,ns,0.159046321,Atoh1,Atoh1_Intergenic_downstream,6,64799489,64799538,64799489,64799490,50,+,CGGCTTTGGTAACCTGTAGCCTGGAGTTGAAGCTCTGGGGGTTTCCACCA,Distal Intergenic,6,64729125,64731245,2121,1,Atoh1-201,70364,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,11921,ENSMUSG00000073043,conserved gene and region,6,64799393,64799496,104,*,104,9,0.509615385,1.337142857,0.086538462,0.00000128,CpGisland,TRUE,NA,NRS
7932,cg27524792,-0.00000049,0.00000212,-0.231206378,0.817307001,loss,ns,0.00000315,0.0000036,0.87403934,0.382773425,pos,ns,-0.001746307,0.00105558,-1.654357803,0.099066946,neg,ns,1.004071226,0.0000188,0.0000363,0.517629175,0.605086197,pos,ns,0.944518712,Hif1an,Hif1an_Intron,19,44636676,44636725,44636724,44636725,50,+,TGCCTGACAGTGATGGATGCGGCAGCTTTTCCCACAATATGGAGAAGGCG,"Intron (Gm35460-201/Gm35460-201, intron 3 of 6)",19,44562850,44576274,13425,1,Hif1an-201,73826,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,31,319594,ENSMUSG00000036450,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14602,cg17997724,-0.0000199,0.00000478,-4.156612744,0.0000418,loss,ns,0.0000071,0.00000812,0.873915806,0.382840596,pos,ns,-0.005174733,0.002378852,-2.175306723,0.030362518,neg,ns,1.517662221,0.000000282,0.0000818,0.003452908,0.997247204,pos,ns,0.912912291,Mctp1,Mctp1_Intron,13,76803919,76803968,76803919,76803920,50,-,CGGTTCTAAGATGACAGCGAGTCATAAGGCTGGTGGTGTGACATTAATTT,"Intron (Mctp1-204/Mctp1, intron 9 of 20)",13,76384535,77031810,647276,1,Mctp1-204,419384,Mctp1-204;Mctp1-201;Mctp1-206,Mctp1;Mctp1;Mctp1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,20,78771,ENSMUSG00000021596,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
36,cg02930279,0.00000383,0.00000184,2.085443826,0.037846692,gain,ns,-0.00000273,0.00000312,-0.873784494,0.382912004,neg,ns,-0.00177815,0.000913657,-1.9461909,0.052535121,neg,ns,1.27955026,0.0000473,0.0000314,1.506387736,0.132985956,pos,ns,0.962442528,Mcoln1,Mcoln1_Exon,8,3511738,3511787,3511786,3511787,50,+,CTGCTGCGTGGCTGTCATCTACCTGGGCTACTGCTTCTGTGGCTGGATCG,"Exon (Mcoln1-201/Mcoln1, exon 11 of 14)",8,3500457,3515232,14776,1,Mcoln1-201,11281,Mcoln1-201;Mcoln1-204;Mcoln1-208;Mcoln1-207;Mcoln1-203;Mcoln1-202;Mcoln1-209;Mcoln1-211;Mcoln1-206;Mcoln1-205;Pnpla6-202;Pnpla6-201;Pnpla6-214;Pnpla6-213;Pnpla6-203;Pnpla6-212;Pnpla6-218;Pnpla6-208,Mcoln1;Mcoln1;Mcoln1;Mcoln1;Mcoln1;Mcoln1;Mcoln1;Mcoln1;Mcoln1;Mcoln1;Pnpla6;Pnpla6;Pnpla6;Pnpla6;Pnpla6;Pnpla6;Pnpla6;Pnpla6,0;11234;0;0;0;0;-3;-14;-895;-1236;-3597;-3597;-3604;-3606;-3624;-3638;-3850;-4874,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,94178,ENSMUSG00000004567,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9015,cg06347432,-0.00000252,0.00000339,-0.743531187,0.457723289,loss,ns,-0.00000503,0.00000575,-0.873647909,0.382986288,neg,ns,-0.001207983,0.001685399,-0.716734308,0.474077684,neg,ns,0.324150487,-0.00000527,0.000058,-0.090909784,0.927622989,neg,ns,0.904058838,Srf,Srf_Exon,17,46549133,46549182,46549133,46549134,50,+,CGGTGAGGTTGCTGCTGCTCCCGGCCTGCTGCCCTATCACAGCCATCTGG,"Exon (Srf-201/Srf, exon 7 of 7)",17,46548329,46556175,7847,2,Srf-201,6993,Cul9-201;Cul9-204;Cul9-202;Srf-201;Srf-203;Srf-202;Srf-204,Cul9;Cul9;Cul9;Srf;Srf;Srf;Srf,-2745;-2745;-2832;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,11,20807,ENSMUSG00000015605,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10449,cg26697378,-0.00000933,0.00000563,-1.657410415,0.098448132,loss,ns,0.00000836,0.00000957,0.873583457,0.383021345,pos,ns,0.005902735,0.002802913,2.105928636,0.036014396,pos,ns,1.44352386,-0.000196296,0.0000964,-2.036431144,0.042556669,neg,ns,0.595262992,Prdm6,Prdm6_Exon,18,53575001,53575050,53575001,53575002,50,-,CGACACCAGCGGATGCCCAATGAGTGCAAGCCAATAACTGAGAGCCCAGA,"Exon (Prdm6-201/Prdm6, exon 7 of 7)",18,53464516,53575857,111342,1,Prdm6-201,110485,Prdm6-201;Prdm6-203;Prdm6-202,Prdm6;Prdm6;Prdm6,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,16,225518,ENSMUSG00000069378,conserved gene and region,18,53574958,53575122,165,*,165,11,0.521212121,0.986413044,0.066666667,0.000000724,CpGisland,TRUE,U15,NS
10612,cg04561327,-0.00000505,0.00000126,-4.012151013,0.0000755,loss,ns,0.00000187,0.00000214,0.873535624,0.383047363,pos,ns,0.001401318,0.000626243,2.237657699,0.025953554,pos,ns,1.585803168,-0.0000541,0.0000215,-2.512945791,0.012479921,neg,ns,0.050051931,Acin1,Acin1_fiveUTR,14,54653649,54653698,54653697,54653698,50,+,AGACATGCAGGGGAGCCATCTTGCCACTTACCCAGCAGCCTGTGTGTGCG,Promoter (<=1kb),14,54642161,54653667,11507,2,Acin1-216,0,Acin1-208;Acin1-216;Acin1-202;Acin1-201;Acin1-219;Acin1-218;Acin1-221;Acin1-224;Acin1-203;Acin1-225;Acin1-204;Acin1-226;Acin1-213;Acin1-214;Acin1-209;Acin1-220,Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,7,22,56215,ENSMUSG00000022185,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9164,cg23441866,-0.0000212,0.000019,-1.113271664,0.266454251,loss,ns,-0.0000282,0.0000323,-0.873439176,0.383099829,neg,ns,0.027420376,0.009464058,2.897316986,0.004031701,pos,ns,2.394511685,-0.00103639,0.000325468,-3.184305992,0.001598507,neg,ns,0.302706051,Sh3pxd2a,Sh3pxd2a_Intron,19,47314797,47314846,47314845,47314846,50,+,CAATCACTGGGGTTTACTCGCAACCCTTAAATAGAAACACATGAGACCCG,"Intron (Sh3pxd2a-201/Sh3pxd2a, intron 7 of 14)",19,47260174,47464401,204228,2,Sh3pxd2a-201,149555,Sh3pxd2a-201;Sh3pxd2a-203;Sh3pxd2a-202,Sh3pxd2a;Sh3pxd2a;Sh3pxd2a,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,6,14218,ENSMUSG00000053617,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
17467,cg14176207,0.0000141,0.00000386,3.661470679,0.000294745,gain,ns,0.00000572,0.00000655,0.873427345,0.383106265,pos,ns,0.000727759,0.00192028,0.37898616,0.704957584,pos,ns,0.151837013,-0.0000053,0.000066,-0.080213001,0.936119608,neg,ns,0.041007106,Hunk,Hunk_fiveUTR,16,90385976,90386025,90385976,90385977,50,-,CGCGAGCGGATTAAATTTCTGCAAATTCAAACTGAATGGGGCTTTCTTCT,Promoter (<=1kb),16,90386013,90499553,113541,1,Hunk-201,0,Hunk-201,Hunk,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,1,26559,ENSMUSG00000053414,conserved gene and region,16,90385701,90385983,283,*,283,32,0.699646643,0.923987348,0.113074205,1.73E-26,CpGisland,TRUE,U1,Pr-A
14671,cg06670835,0.00000123,0.0000042,0.292511348,0.770091365,gain,ns,0.00000623,0.00000714,0.873392974,0.383124963,pos,ns,0.002164996,0.002090892,1.035441679,0.301269725,pos,ns,0.521044509,0.000135428,0.0000719,1.883418138,0.060579676,pos,ns,0.896726541,Usp25,Usp25_Intron,16,77238633,77238682,77238633,77238634,50,+,CGACTGTCCTGAATCAGTCACGAGCTCCCCTGCTGCAGATCCTGTAATTT,"Intron (Mir99ahg-214/Mir99ahg-214, intron 2 of 3)",16,77083900,77108205,24306,1,Usp25-203,154733,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,5,30940,ENSMUSG00000022867,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11618,cg20513470,0.00011285,0.00000944,11.95139388,2.48E-27,gain,yes,-0.000014,0.000016,-0.87333693,0.383155453,neg,ns,0.018738546,0.004699597,3.987266689,0.0000834,pos,ns,4.078731539,-0.000245532,0.000161619,-1.519207571,0.12972946,neg,ns,0.212547452,Emx2,Emx2_Intergenic_downstream,19,59467096,59467145,59467144,59467145,50,-,AATGAGGTTAATGCCCTTTGTATCTCAGGCCTCCACATCTTCATTACGCG,Downstream (1-2kb),19,59462802,59464215,1414,1,Emx2-203,4343,Emx2-201;Emx2-202;Emx2-203,Emx2;Emx2;Emx2,0;7577;4294,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,15,23,13797,ENSMUSG00000043969,mapped to different genes,19,59467121,59467392,272,*,272,18,0.525735294,0.993103448,0.066176471,7.09E-11,CpGisland,TRUE,U13,Hc-P
17114,cg13528652,0.0000358,0.00000704,5.087712014,0.000000629,gain,yes,0.0000104,0.000012,0.872661722,0.383522907,pos,ns,0.003448383,0.003502431,0.984568498,0.325603871,pos,ns,0.487310441,-0.0000931,0.000120448,-0.772584151,0.440357152,neg,ns,0.75988191,Gm20537,Gm20537_Exon,9,88456290,88456339,88456338,88456339,50,-,CTGGCTGGTTGTACCCATCAGCTTTGCGCTTTCCTCCTACATTTCCACCG,Promoter (<=1kb),9,88407432,88456616,49185,2,Gm20537-202,277,Gm20537-202;Gm20537-201;Syncrip-201;Syncrip-210;Syncrip-211;Syncrip-207;Syncrip-208;Syncrip-203;Syncrip-205;Syncrip-209,Gm20537;Gm20537;Syncrip;Syncrip;Syncrip;Syncrip;Syncrip;Syncrip;Syncrip;Syncrip,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,5,,NA,mapped to different genes,9,88456277,88456476,200,*,200,15,0.625,0.818330606,0.075,6.51E-10,CpGisland,TRUE,U10,Tr-S
12488,cg10751109,0.00000698,0.00000576,1.212736834,0.226153806,gain,ns,-0.00000854,0.00000978,-0.872633107,0.383538485,neg,ns,0.001623493,0.002865721,0.566521659,0.571449131,pos,ns,0.243022424,-0.000165439,0.0000986,-1.678697619,0.094218655,neg,ns,0.909251198,Megf11,Megf11_Intron,9,64616563,64616612,64616611,64616612,50,-,GCTGCATCTGCCCTCCTTGTGTTTTCTTATTTGTTCCCAACAGGAAATCG,"Intron (Megf11-202/Megf11, intron 4 of 22)",9,64385626,64700975,315350,1,Megf11-202,230937,Megf11-202;Megf11-203;Megf11-210;Megf11-207;Megf11-201;Megf11-205;Megf11-206,Megf11;Megf11;Megf11;Megf11;Megf11;Megf11;Megf11,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,7,214058,ENSMUSG00000036466,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27949,cg10018304,-0.00000804,0.00000245,-3.275289932,0.00117507,loss,ns,-0.00000364,0.00000417,-0.872614033,0.383548868,neg,ns,-0.00298624,0.00122172,-2.444291965,0.015070586,neg,ns,1.821869866,7.95E-08,0.000042,0.001891933,0.998491673,pos,ns,0.934438412,Angel2,Angel2_Exon,1,190942145,190942194,190942145,190942146,50,+,CGGGGACAAAGAATTTTATCTATTCCAATTTGGCCCCCAAACCTAGGTAT,"Exon (Angel2-201/Angel2, exon 7 of 10)",1,190925112,190946962,21851,1,Angel2-201,17033,Angel2-201;Angel2-208;Angel2-202;Angel2-203;Angel2-204;Angel2-207;Angel2-209;Angel2-205;Angel2-206;Angel2-210,Angel2;Angel2;Angel2;Angel2;Angel2;Angel2;Angel2;Angel2;Angel2;Angel2,0;13653;0;0;0;13323;0;13294;13292;4893,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,52477,ENSMUSG00000026634,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2287,cg16076776,-0.0000239,0.00000799,-2.996129417,0.002954999,loss,ns,-0.0000118,0.0000136,-0.872555674,0.383580639,neg,ns,-0.007240566,0.003975226,-1.82142252,0.069506343,neg,ns,1.157975562,0.000273718,0.000136708,2.002213292,0.046132599,pos,ns,0.901206018,Meis1,Meis1_Intron,11,18945148,18945197,18945148,18945149,50,+,CGTTTGCTAGTGACAGAAACTGAAAATGTCATATTATCTGCCCATGTGTC,"Intron (Meis1-206/Meis1, intron 7 of 9)",11,18879817,19018985,139169,2,Meis1-206,73788,Meis1-206;Meis1-202;Meis1-209;Meis1-201;Meis1-203;Meis1-208;Meis1-207,Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,88,17268,ENSMUSG00000020160,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17910,cg09547488,-0.0000227,0.0000168,-1.353040364,0.177028641,loss,ns,0.0000249,0.0000285,0.872477077,0.383623431,pos,ns,0.003157194,0.008353184,0.377963,0.705716747,pos,ns,0.151369576,0.000296007,0.000287265,1.030431023,0.303610983,pos,ns,0.345286096,Nup54,Nup54_Exon,5,92434279,92434328,92434279,92434280,50,-,CGAAATTCCCAATATTAAAGTTCACTGCAGGATTAGCAGTTAATCCGAAA,Promoter (<=1kb),5,92415540,92435219,19680,2,Nup54-201,891,Nup54-201;Nup54-206;Nup54-202;Nup54-207;Nup54-205;Nup54-204,Nup54;Nup54;Nup54;Nup54;Nup54;Nup54,0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,269113,ENSMUSG00000034826,conserved gene and region,5,92434164,92434352,189,*,189,11,0.492063492,1.024137931,0.058201058,0.00000271,CpGisland,TRUE,NA,NRS
11174,cg01342627,0.0000216,0.00000541,3.999032886,0.0000796,gain,ns,0.00000802,0.00000919,0.872473175,0.383625555,pos,ns,0.001976539,0.002691709,0.734306331,0.463317107,pos,ns,0.334121664,0.000120639,0.0000926,1.303254469,0.193455017,pos,ns,0.74288196,Satb2,Satb2_Intron,1,56833429,56833478,56833477,56833478,50,+,CGGCCTCCATGTTAATAACCTGATCATTCCATTTTCTCCTTCAACTGCCG,"Intron (Satb2-201/Satb2, intron 8 of 9)",1,56793981,56972502,178522,2,Satb2-201,139024,Satb2-201;Satb2-202;Satb2-205,Satb2;Satb2;Satb2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,33,212712,ENSMUSG00000038331,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12220,cg18548562,-0.0000102,0.00000277,-3.681323162,0.000273604,loss,ns,-0.0000041,0.0000047,-0.872355654,0.383689544,neg,ns,-0.003937317,0.001378226,-2.856800374,0.004568556,neg,ns,2.340221019,0.0000548,0.0000474,1.156078322,0.248539302,pos,ns,0.896123503,Iqch,Iqch_Intron,9,63523397,63523446,63523445,63523446,50,-,TTCCTTTTGCTCAGGCGCCCTAGGTGCAAATAAAGCATCCCATCTGCTCG,"Intron (Gm16759-201/Gm16759-201, intron 3 of 4)",9,63421455,63602493,181039,2,Iqch-201,79047,Iqch-201;Iqch-203;Iqch-204;Iqch-202;Iqch-206,Iqch;Iqch;Iqch;Iqch;Iqch,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,22,78250,ENSMUSG00000037801,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1628,cg21799957,-0.00000181,0.00000189,-0.953980123,0.340836978,loss,ns,0.00000281,0.00000322,0.872010378,0.38387758,pos,ns,0.001290522,0.000942836,1.368766283,0.172063363,pos,ns,0.764311594,-0.0000961,0.0000324,-2.964507636,0.003266836,neg,ns,0.951272782,Zfp521,Zfp521_Intron,18,13897402,13897451,13897450,13897451,50,+,ATTGGGATAATAATGTATTCATGGTGCTGGCGACCTGGGGCTGCAGTGCG,"Intron (Zfp521-201/Zfp521, intron 3 of 7)",18,13687013,13972787,285775,2,Zfp521-201,75336,Zfp521-201;Zfp521-204;Zfp521-203;Zfp521-202,Zfp521;Zfp521;Zfp521;Zfp521,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,81,225207,ENSMUSG00000024420,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16800,cg00077617,0.0000855,0.0000132,6.500949409,3.19E-10,gain,yes,0.0000195,0.0000224,0.871896836,0.383939427,pos,ns,0.01037469,0.006549022,1.5841588,0.114177166,pos,ns,0.942420741,-0.000110405,0.00022522,-0.490208273,0.624333288,neg,ns,0.044050644,Lrba,Lrba_Exon,3,86547418,86547467,86547418,86547419,50,+,CGTCGTCCACGAAGTTGAAGACGCCCATCTGGTTTAGGTAGAGCACCACC,"Exon (Lrba-205/Lrba, exon 1 of 5)",3,86224680,86746712,522033,1,Lrba-202,322738,Lrba-202;Lrba-204;Lrba-201;Lrba-208;Lrba-203;Lrba-205;Lrba-206;Mab21l2-201;Mab21l2-202,Lrba;Lrba;Lrba;Lrba;Lrba;Lrba;Lrba;Mab21l2;Mab21l2,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,17,45,80877,ENSMUSG00000028080,mapped to different genes,3,86546680,86547428,749,*,749,59,0.619492657,0.821027794,0.078771696,1.32E-38,CpGisland,TRUE,U3,Pr-B
5434,cg07283031,0.00000287,0.00000504,0.569366422,0.569519815,gain,ns,-0.00000747,0.00000857,-0.871766867,0.38401023,neg,ns,-0.005595857,0.002510218,-2.229231649,0.026514841,neg,ns,1.57651098,0.000110808,0.0000863,1.283597108,0.200241602,pos,ns,0.842909045,Mvb12b,Mvb12b_Intron,2,33941675,33941724,33941675,33941676,50,-,CGGCGATGAGCTTTTAAATCTTGGTGGAAATCATAAATAATTGCACTAAG,"Intron (Gm13403-201/Gm13403-201, intron 1 of 1)",2,33729953,33887946,157994,2,Mvb12b-201,-53778,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,28,47,72543,ENSMUSG00000038740,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22904,cg24173251,-0.00000449,0.00000316,-1.418709513,0.1569883,loss,ns,0.00000468,0.00000537,0.871711884,0.384040184,pos,ns,0.002706553,0.001574356,1.719148914,0.086585496,pos,ns,1.062554852,-0.0000969,0.0000541,-1.789448167,0.07451873,neg,ns,0.933957923,Wbp2,Wbp2_Exon,11,116080579,116080628,116080627,116080628,50,+,GGCAGGGGTACATTCCATTGGCGACTGGCGGGGGATAGACATAGGCCCCG,"Exon (Wbp2-201/Wbp2, exon 5 of 8)",11,116078573,116086995,8423,2,Wbp2-201,6367,Unc13d-202;Unc13d-201;Unc13d-203;Unc13d-207;Unc13d-209;Unc13d-205;Unc13d-204;Unc13d-206;Wbp2-201;Wbp2-202;Wbp2-204;Wbp2-205;Wbp2-203,Unc13d;Unc13d;Unc13d;Unc13d;Unc13d;Unc13d;Unc13d;Unc13d;Wbp2;Wbp2;Wbp2;Wbp2;Wbp2,0;0;0;0;0;-2618;-3528;-2638;0;0;0;6367;6344,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,22378,ENSMUSG00000034341,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11998,cg26897122,0.00000333,0.00000315,1.057043098,0.291314941,gain,ns,0.00000466,0.00000535,0.871588986,0.384107145,pos,ns,0.003106849,0.001566636,1.983134354,0.048234624,pos,ns,1.316641105,-0.0000734,0.0000539,-1.361515274,0.174339621,neg,ns,0.925965328,Tspan15,Tspan15_Exon,10,62188680,62188729,62188728,62188729,50,-,ATGGTGTAGTTGTCCATGAACCAGATGATCACGGCGTTGGTGCAGCCCCG,"Exon (Tspan15-201/Tspan15, exon 7 of 8)",10,62185396,62231251,45856,2,Tspan15-201,42522,Tspan15-201;Tspan15-202;Tspan15-204;Tspan15-203,Tspan15;Tspan15;Tspan15;Tspan15,0;0;0;1651,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,70423,ENSMUSG00000037031,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19293,cg14783875,0.000008,0.00000285,2.809442136,0.005278039,gain,ns,-0.00000422,0.00000484,-0.871530397,0.384139071,neg,ns,0.0000538,0.001417761,0.037944854,0.969756074,pos,ns,0.013337491,0.0000349,0.0000488,0.716381922,0.474294877,pos,ns,0.925581227,Foxp1,Foxp1_Exon,6,98941555,98941604,98941603,98941604,50,+,TTCGTTTTTGGAATTCTACTTCATCCACTGTCCATACTGCCCCTTTAACG,"Exon (Foxp1-206/Foxp1, exon 15 of 18)",6,98925338,99266515,341178,2,Foxp1-206,324911,Foxp1-206;Foxp1-204;Foxp1-220;Foxp1-230;Foxp1-225;Foxp1-201;Foxp1-205;Foxp1-207;Foxp1-208;Foxp1-226;Foxp1-228;Foxp1-221;Foxp1-222;Foxp1-210,Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,87,108655,ENSMUSG00000030067,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10224,cg02808901,0.0000725,0.00000937,7.742977241,1.39E-13,gain,yes,-0.0000139,0.0000159,-0.871203029,0.384317481,neg,ns,0.008922441,0.004661224,1.914184063,0.05651713,pos,ns,1.247819897,-0.00000247,0.000160299,-0.015427837,0.987700779,neg,ns,0.032335697,Hoxa11,Hoxa11_Exon,6,52246008,52246057,52246008,52246009,50,-,CGTCACTCGGTGTTCTCACCGAAAGCACGTAATCGCCGGTGTAACTCATG,Promoter (<=1kb),6,52242106,52245810,3705,2,Hoxa11-201,-247,Hoxa11-201;Hoxa11-202,Hoxa11;Hoxa11,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,15,18,15396,ENSMUSG00000038210,mapped to different genes,6,52246008,52246200,193,*,193,16,0.658031088,0.771614193,0.082901554,3.24E-11,CpGisland,TRUE,U13,Hc-P
22798,cg07584850,0.0000122,0.0000029,4.190070476,0.0000364,gain,ns,0.0000043,0.00000493,0.871102047,0.384372525,pos,ns,0.00296824,0.001444906,2.05427864,0.04078689,pos,ns,1.389479408,-0.0000556,0.0000497,-1.119192906,0.263924288,neg,ns,0.041234669,Dmbx1,Dmbx1_Intergenic_upstream,4,115963185,115963234,115963185,115963186,50,-,CGCTCGGCCGCCGCTCCCCGAGGGGCCGCCAGATTGTTCCCTTCATAATT,Distal Intergenic,4,115915119,115939926,24808,2,Dmbx1-203,-23308,Faah-202,Faah,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,15,42,140477,ENSMUSG00000028707,mapped to different genes,4,115962737,115963443,707,*,707,80,0.684582744,0.96711865,0.113154173,1.72E-65,CpGisland,TRUE,U3,Pr-B
23499,cg27443864,-0.0000229,0.00000861,-2.663474582,0.008137958,loss,ns,-0.0000127,0.0000146,-0.871073022,0.384388347,neg,ns,-0.015332196,0.004284431,-3.578584204,0.000400757,neg,ns,3.397118548,0.000272929,0.000147341,1.852357927,0.064924886,pos,ns,0.79440263,Gm18441,Gm18441_Intergenic_downstream,12,118703861,118703910,118703861,118703862,50,-,CGGAAGCTCTTTTGTGCAAGTAACTAGCTGTATTAAATGCAATAATTACA,Distal Intergenic,12,118732439,118733055,617,2,Gm18441-201,29194,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,9,100417195,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16158,cg02806036,-0.0000185,0.00000642,-2.878043715,0.00427946,loss,ns,-0.0000095,0.0000109,-0.87097427,0.384442181,neg,ns,0.003421145,0.003194197,1.071050309,0.284979963,pos,ns,0.545185674,-0.000258052,0.000109848,-2.349168771,0.019442779,neg,ns,0.845248858,Zfp407,Zfp407_Intron,18,84542292,84542341,84542340,84542341,50,-,ATCCCATTAATTAAGTTAAATTACTTCTGACTGCCAAATATTCTCTGTCG,"Intron (Zfp407-201/Zfp407, intron 2 of 2)",18,84128027,84558425,430399,2,Zfp407-201,16084,Zfp407-201;Zfp407-202;Zfp407-204,Zfp407;Zfp407;Zfp407,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,32,240476,ENSMUSG00000048410,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6266,cg05907526,-0.000048,0.0000206,-2.335921177,0.02013263,loss,ns,0.0000304,0.0000349,0.870944823,0.384458236,pos,ns,-0.006107738,0.010228326,-0.597139521,0.550850117,neg,ns,0.258966554,0.000469983,0.000351751,1.336124072,0.182488683,pos,ns,0.641014985,Tenm2,Tenm2_Intron,11,36678379,36678428,36678379,36678380,50,+,CGCATATTTATTTATGTAGGCAAAAATGAAAGCTGCTAATTTCTACGGCA,"Intron (Tenm2-202/Tenm2, intron 4 of 30)",11,36006656,37235882,1229227,2,Tenm2-202,557454,Tenm2-202;Tenm2-208;Tenm2-201;Tenm2-204;Tenm2-205,Tenm2;Tenm2;Tenm2;Tenm2;Tenm2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,47,84,23964,ENSMUSG00000049336,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
23092,cg24949638,0.0000771,0.00000715,10.78421402,3.09E-23,gain,yes,-0.0000106,0.0000122,-0.870885323,0.384490675,neg,ns,0.00234286,0.003559769,0.658149489,0.510930532,pos,ns,0.291638144,-0.000201903,0.00012242,-1.649264386,0.100106405,neg,ns,0.741283195,Rnf220,Rnf220_Exon,4,117288471,117288520,117288471,117288472,50,-,CGGCCTGCTTTCAGAGAAGGCCTCTAAGAGCTGTCGAGCCCACGCTGATC,"Exon (Rnf220-210/Rnf220, exon 2 of 4)",4,117271463,117497052,225590,2,Rnf220-201,208532,Rnf220-201;Rnf220-203;Rnf220-212;Rnf220-202;Rnf220-205;Rnf220-209;Rnf220-213;Rnf220-210;Rnf220-206;Rnf220-208,Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,15,152,66743,ENSMUSG00000028677,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9990,cg14182371,-0.0000248,0.0000118,-2.109183949,0.035730333,loss,ns,0.0000174,0.00002,0.870871605,0.384498154,pos,ns,0.010735316,0.005860666,1.831757163,0.067947007,pos,ns,1.167829666,-0.000580954,0.000201548,-2.882462949,0.004221455,neg,ns,0.76688883,Ppargc1a,Ppargc1a_Intergenic_upstream,5,51796077,51796126,51796125,51796126,50,+,TGATTGCTGCCTTTTTGACATTTCACCAAGGAAATATGTTTGCGTGTTCG,Distal Intergenic,5,51495780,51567726,71947,2,Ppargc1a-202,-228351,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,13,19017,ENSMUSG00000029167,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27453,cg23391609,0.0000696,0.0000123,5.658236707,3.48E-08,gain,yes,0.0000182,0.0000209,0.87068381,0.384600552,pos,ns,0.017775658,0.006124723,2.902279524,0.003970062,pos,ns,2.40120273,-0.000412048,0.000210629,-1.956276655,0.05133025,neg,ns,0.567403708,Kcng1,Kcng1_Exon,2,168268756,168268805,168268756,168268757,50,+,CGTCCAGGTGGTCCTCCGCGATGCCCCAGTACAGCAGCTCCTCCTGGAAG,"Exon (Kcng1-202/Kcng1, exon 2 of 3)",2,168260117,168281132,21016,2,Kcng1-202,12327,Kcng1-202;Kcng1-201;Kcng1-203,Kcng1;Kcng1;Kcng1,0;0;12931,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,241794,ENSMUSG00000074575,conserved gene and region,2,168268587,168268983,397,*,397,31,0.632241814,0.791956242,0.078085642,1.80E-20,CpGisland,TRUE,U11,Tr-P
15770,cg19272215,-0.0000218,0.00000664,-3.274717977,0.001177371,loss,ns,-0.00000983,0.0000113,-0.870664314,0.384611184,neg,ns,-0.003440669,0.003306174,-1.040679833,0.298835117,neg,ns,0.524568368,-0.0000808,0.000113699,-0.710712143,0.477796986,neg,ns,0.921458544,Dpf3,Dpf3_Exon,12,83269528,83269577,83269576,83269577,50,-,GTTGACGTGTCACTTTCTGACGTGGAACCGAATAAGTCCTCCGTGGTACG,"Exon (Dpf3-203/Dpf3, exon 7 of 7)",12,83213745,83350895,137151,2,Dpf3-204,81318,Dpf3-204;Dpf3-207;Dpf3-202;Dpf3-203;Dpf3-201;Dpf3-206;Dpf3-205,Dpf3;Dpf3;Dpf3;Dpf3;Dpf3;Dpf3;Dpf3,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,16,70127,ENSMUSG00000021221,conserved gene and region,12,83269462,83269588,127,*,127,13,0.582677165,1.205989774,0.102362205,2.30E-10,CpGisland,TRUE,U11,Tr-P
6188,cg07714477,7.56E-08,0.000000507,0.149241329,0.881460251,gain,ns,0.000000749,0.000000861,0.870609432,0.384641112,pos,ns,0.00076375,0.000252203,3.028314788,0.002665845,pos,ns,2.574165169,-0.0000175,0.00000867,-2.012278814,0.045055216,neg,ns,0.010668124,Pura,Pura_Exon,18,36287602,36287651,36287650,36287651,50,-,GGTGCGCGAGAACCGCAAGTACTACATGGATCTCAAGGAGAACCAGCGCG,"Exon (Pura-201/Pura, exon 2 of 2)",18,36281097,36292535,11439,1,Pura-201,6505,Pura-201,Pura,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,13,19,19290,ENSMUSG00000043991,conserved gene and region,18,36286687,36288029,1343,*,1343,129,0.68652271,0.823041768,0.096053611,4.14E-95,CpGisland,TRUE,U1,Pr-A
21768,cg15043858,-0.00000867,0.0000086,-1.007967896,0.314255982,loss,ns,-0.0000127,0.0000146,-0.870568459,0.384663457,neg,ns,-0.008751942,0.004280222,-2.04474008,0.041724787,neg,ns,1.379605873,0.0000631,0.000147196,0.428920674,0.668278863,pos,ns,0.786241207,Zfhx3,Zfhx3_Intergenic_downstream,8,109012822,109012871,109012822,109012823,50,+,CGGCCATTAGGGGCTCAGCAGGGAGACACATTACATAAATGACTTTGTCT,Distal Intergenic,8,108714644,108961630,246987,1,Zfhx3-201,298178,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,177,11906,ENSMUSG00000038872,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17550,cg11395473,0.0000116,0.0000123,0.944195931,0.345804833,gain,ns,0.0000182,0.0000209,0.870558806,0.384668722,pos,ns,0.014271099,0.006134151,2.326499388,0.020636229,pos,ns,1.685369651,-0.000448771,0.000210953,-2.127351872,0.034179993,neg,ns,0.759933578,Anks1b,Anks1b_Exon,10,90914680,90914729,90914728,90914729,50,+,CTGTTTATATCAGCAGTCGTCTGTCTGTGAAATATGGACGAATCAGAACG,"Exon (Anks1b-210/Anks1b, exon 6 of 13)",10,89873509,90970219,1096711,1,Anks1b-233,1041171,Anks1b-233;Anks1b-222;Anks1b-214;Anks1b-215;Anks1b-208;Anks1b-210;Anks1b-221;Anks1b-219;Anks1b-213;Anks1b-216;Anks1b-224;Anks1b-231;Anks1b-218;Anks1b-217;Anks1b-201;Anks1b-211;Anks1b-212;Anks1b-225;Anks1b-205;Anks1b-204;Anks1b-220;Anks1b-232;Anks1b-202;Anks1b-228,Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,14,77531,ENSMUSG00000058589,conserved gene but different region,10,90914697,90914866,170,*,170,10,0.482352941,1.013714967,0.058823529,0.00000835,CpGisland,TRUE,U15,NS
24110,cg06857684,-0.00000421,0.000004,-1.052499211,0.293390268,loss,ns,0.00000591,0.00000679,0.870516641,0.384691718,pos,ns,-0.002737404,0.001989837,-1.375692687,0.169909941,neg,ns,0.76978121,0.0000894,0.0000684,1.305968232,0.192531603,pos,ns,0.529954977,Prkcb,Prkcb_Exon,7,122627631,122627680,122627679,122627680,50,+,AAGTTCTTTTCTTCCCCTCTCATAGTGTGGGCGAAATGCTGAAAACTTCG,"Exon (Prkcb-205/Prkcb, exon 17 of 18)",7,122288751,122634399,345649,1,Prkcb-205,338880,Prkcb-205;Prkcb-202;Prkcb-201;Prkcb-203,Prkcb;Prkcb;Prkcb;Prkcb,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,7,18751,ENSMUSG00000052889,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27829,cg04541946,-0.00000575,0.0000017,-3.383990905,0.000806207,loss,ns,0.00000251,0.00000288,0.870395044,0.384758039,pos,ns,0.001469396,0.000844982,1.738968411,0.08303303,pos,ns,1.080749113,-0.0000676,0.0000291,-2.325371341,0.020697258,neg,ns,0.962742593,Esrrg,Esrrg_Intron,1,188167337,188167386,188167337,188167338,50,+,CGCATTTTAAGGAATAGTAATCTCCGTCTAATAAGATGCAAATGTGTCAC,"Intron (Esrrg-203/Esrrg, intron 6 of 7)",1,187609029,188214386,605358,1,Esrrg-203,558308,Esrrg-203;Esrrg-201;Esrrg-202,Esrrg;Esrrg;Esrrg,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,60,26381,ENSMUSG00000026610,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
870,cg16825428,-0.00000109,0.000000932,-1.170354485,0.242757273,loss,ns,0.00000138,0.00000158,0.870221625,0.384852637,pos,ns,0.000411238,0.000464092,0.88611233,0.376243862,pos,ns,0.424530577,-0.0000274,0.000016,-1.719457995,0.086529164,neg,ns,0.02703091,Zbtb10,Zbtb10_Promoter,3,9249923,9249972,9249971,9249972,50,+,TGGCTGCTGGTGATGTAACACCCATGTCAATACTTCCCAGTGAACGCACG,Promoter (<=1kb),3,9250602,9285333,34732,1,Zbtb10-201,-630,Zbtb10-201,Zbtb10,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,4,9,229055,ENSMUSG00000069114,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10697,cg08401965,0.00000733,0.00000299,2.455127697,0.014632429,gain,ns,-0.00000441,0.00000507,-0.870104071,0.38491677,neg,ns,0.005737389,0.001485883,3.861265154,0.00013732,pos,ns,3.86226594,-0.000167393,0.0000511,-3.27583763,0.001172871,neg,ns,0.054982021,Zfp608,Zfp608_Intron,18,54990381,54990430,54990381,54990382,50,-,CGAGACAGAATGTGCTAACATCGGGATAAATTAGTGAAAGGGAAGAAAGA,"Intron (Gm4221-203/Gm4221-203, intron 1 of 1)",18,54888723,54992555,103833,2,Zfp608-203,2125,Zfp608-201;Zfp608-203,Zfp608;Zfp608,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,32,269023,ENSMUSG00000052713,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
16597,cg19148866,-0.00000548,0.00000283,-1.940372103,0.053240996,loss,ns,-0.00000418,0.0000048,-0.870102401,0.38491768,neg,ns,-0.001156195,0.001406232,-0.822193786,0.411598551,neg,ns,0.385526163,0.0000632,0.0000484,1.307557056,0.191992485,pos,ns,0.076972222,Six3,Six3_Intron,17,85620691,85620740,85620739,85620740,50,-,GGGCTGACAGTGATTGGCAGTGGTTGCCGTGGCAACGCCACAACGACACG,"Intron (Six3-202/Six3, intron 1 of 2)",17,85613608,85625222,11615,1,Six3-202,7083,Six3-202;Six3-203;Six3-201,Six3;Six3;Six3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,24,20473,ENSMUSG00000038805,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23051,cg02969669,-0.00000317,0.00000205,-1.543270187,0.123785405,loss,ns,-0.00000304,0.00000349,-0.870065606,0.384937756,neg,ns,-0.002445514,0.001022603,-2.391460375,0.017377422,neg,ns,1.760014661,0.0000652,0.0000352,1.85277143,0.064865385,pos,ns,0.942337831,Gan,Gan_Exon,8,117183569,117183618,117183569,117183570,50,-,CGGTAATGGTTATGAGAGAGATCCTGGATTACATCTTCAGTGGGCAGGTA,"Exon (Gan-201/Gan, exon 2 of 11)",8,117158135,117205186,47052,1,Gan-201,25434,Gan-201;Gan-202,Gan;Gan,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,209239,ENSMUSG00000052557,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20938,cg26307043,0.0000207,0.00000484,4.264257126,0.0000267,gain,ns,-0.00000716,0.00000823,-0.869864767,0.385047344,neg,ns,0.000805726,0.002410882,0.33420379,0.738451763,pos,ns,0.131677868,0.0000388,0.0000829,0.467479725,0.640485133,pos,ns,0.819133349,Dchs1,Dchs1_Exon,7,105753834,105753883,105753882,105753883,50,-,TGGAACTGAGGGCACCAGCTCAGCAGGTAGTCCCAGTTATAGCTGCCACG,"Exon (Dchs1-201/Dchs1, exon 21 of 21)",7,105752990,105787654,34665,2,Dchs1-201,33771,Dchs1-201;Dchs1-202;Tpp1-201;Tpp1-206;Tpp1-202;Tpp1-203;Tpp1-205;Tpp1-204;Tpp1-210;Tpp1-208;Tpp1-207;Tpp1-209,Dchs1;Dchs1;Tpp1;Tpp1;Tpp1;Tpp1;Tpp1;Tpp1;Tpp1;Tpp1;Tpp1;Tpp1,0;0;-1599;-1621;-4702;-1617;-1739;-1636;-1742;-1619;-1638;-1638,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,233651,ENSMUSG00000036862,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12198,cg20715588,0.000205962,0.0000232,8.889946646,5.13E-17,gain,yes,-0.0000342,0.0000394,-0.86934752,0.385329668,neg,ns,0.050019797,0.011530942,4.337876058,0.0000195,pos,ns,4.710275349,-0.000966699,0.000396548,-2.437784129,0.015339285,neg,ns,0.505594964,Map2k5,Map2k5_Intron,9,63329139,63329188,63329187,63329188,50,+,CAGTGACACAGATGTCTCAGTCAATACAGCCTAATAGGCAGGCTTGATCG,"Intron (Map2k5-201/Map2k5, intron 7 of 21)",9,63163768,63377902,214135,2,Map2k5-201,48714,Map2k5-201,Map2k5,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,34,37,23938,ENSMUSG00000058444,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15172,cg03082580,0.0000127,0.00000304,4.187862158,0.0000367,gain,ns,0.00000448,0.00000516,0.869200868,0.385409737,pos,ns,0.003311112,0.001511538,2.190558905,0.029228165,pos,ns,1.534198449,0.00000501,0.000052,0.096341318,0.923311748,pos,ns,0.052597617,Polg,Polg_Exon,7,79505266,79505315,79505314,79505315,50,-,AGGCCCGTTTCTCTCTTTGGTTATCTAGCTGTATGAGTGCCACAGAGCCG,"Exon (Mir9-3-201/Mir9-3-201, exon 1 of 1)",7,79446231,79466362,20132,2,Polg-201,-38953,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,16,18975,ENSMUSG00000039176,mapped to different genes,7,79505314,79505650,337,*,337,24,0.65578635,0.662407862,0.071216617,4.85E-15,CpGisland,TRUE,NA,NRS
12167,cg07366921,-0.00000102,0.0000094,-0.108318927,0.913812784,loss,ns,-0.0000139,0.000016,-0.869192948,0.385414061,neg,ns,0.010088074,0.004680265,2.155449357,0.031896171,pos,ns,1.496261443,-0.000380292,0.000160954,-2.362736639,0.018757848,neg,ns,0.341698848,Kif12,Kif12_Intergenic_upstream,4,63186672,63186721,63186672,63186673,50,-,CGTTATCTGCCAAGTTCAAGAATGTGGTTTGAAAAAATAGAATTTAAAGG,Distal Intergenic,4,63165637,63172131,6495,2,Kif12-201,-14590,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,16552,ENSMUSG00000028357,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24693,cg04407762,0.0000449,0.00000324,13.8564235,2.60E-34,gain,yes,-0.00000478,0.0000055,-0.869130187,0.385448331,neg,ns,0.007395576,0.001611455,4.589377702,0.00000647,pos,ns,5.189362797,-0.0000888,0.0000554,-1.602016801,0.11017034,neg,ns,0.053422188,Neurog2,Neurog2_Promoter,3,127627508,127627557,127627556,127627557,50,-,ATCTTAAAGTCTATGAGACTTTCTGACTCAAGGCTCGGAGCTGGTAATCG,Promoter (5-6kb),3,127633135,127635631,2497,1,Neurog2-201,-5627,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,13,14,11924,ENSMUSG00000027967,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
17703,cg25425140,0.0000475,0.00000791,6.003945532,5.38E-09,gain,yes,0.0000117,0.0000134,0.869125849,0.3854507,pos,ns,0.010133289,0.003936564,2.574145271,0.010512897,pos,ns,1.978277578,-0.000271802,0.000135378,-2.007727088,0.04553975,neg,ns,0.101879102,Zic4,Zic4_Intergenic_downstream,9,91394536,91394585,91394536,91394537,50,+,CGCCGGCCCACTTCGCACCTGCAGTCTGAATAGGGCTCCTTGTCAATGGG,Distal Intergenic,9,91382410,91388044,5635,1,Zic4-202,12126,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,55,22774,ENSMUSG00000036972,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
8268,cg11676114,0.00000371,0.0000037,1.002592261,0.31683957,gain,ns,0.00000546,0.00000628,0.869068874,0.385481812,pos,ns,-0.001078997,0.001841072,-0.586070231,0.558254779,neg,ns,0.25316755,-0.00000729,0.0000633,-0.115207088,0.908355568,neg,ns,0.921754206,Ebf1,Ebf1_Exon,11,44907961,44908010,44907961,44907962,50,+,CGACTGTGATCATCATAGGGGACAATTTCTTTGATGGGTTACAGGTCATA,"Exon (Ebf1-203/Ebf1, exon 9 of 16)",11,44617317,45004995,387679,1,Ebf1-203,290644,Ebf1-203;Ebf1-202;Ebf1-201;Ebf1-206,Ebf1;Ebf1;Ebf1;Ebf1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,15,80,13591,ENSMUSG00000057098,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13442,cg23787595,-0.0000122,0.00000534,-2.281784047,0.023179674,loss,ns,0.00000788,0.00000907,0.868979041,0.38553087,pos,ns,-0.000636454,0.002657829,-0.239464038,0.810904027,neg,ns,0.091030543,0.0000374,0.0000914,0.408802135,0.682967137,pos,ns,0.941268202,Gad1,Gad1_Exon,2,70574164,70574213,70574164,70574165,50,+,CGCTCCACCAAGGTGCTGGACTTTCATCACCCACACCAGTTGCTGGAAGG,"Exon (Gad1-203/Gad1, exon 5 of 9)",2,70562042,70587136,25095,1,Gad1-203,12122,Gad1-203;Gad1-201;Gad1-208;Gad1-207;Gad1-205;Gad1-202;Gad1-206,Gad1;Gad1;Gad1;Gad1;Gad1;Gad1;Gad1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,14415,ENSMUSG00000070880,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2325,cg23207462,0.00000434,0.00000147,2.94882,0.003432467,gain,ns,-0.00000217,0.0000025,-0.868925432,0.385560147,neg,ns,0.001766203,0.000733087,2.409267398,0.016567307,pos,ns,1.780748077,-0.0000576,0.0000252,-2.283180299,0.023096295,neg,ns,0.054111536,Meis1,Meis1_fiveUTR,11,19018585,19018634,19018633,19018634,50,-,AACTACCAAATCTCATGGCTTTCTGCCACTCCAGCTGTCAATCACAGGCG,Promoter (<=1kb),11,18879817,19018985,139169,2,Meis1-206,351,Meis1-206;Meis1-202;Meis1-209;Meis1-201;Meis1-208;Meis1-207;Meis1-204;Meis1-205,Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,7,88,17268,ENSMUSG00000020160,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
890,cg19077847,0.000117974,0.0000124,9.533574236,4.63E-19,gain,yes,0.0000183,0.000021,0.868730028,0.385666875,pos,ns,0.028176003,0.006158942,4.574812246,0.0000069,pos,ns,5.161030921,-0.000821196,0.000211806,-3.877123024,0.000129062,neg,ns,0.281120077,Gm13220,Gm13220_Intron,2,9433600,9433649,9433648,9433649,50,-,ATATTCCCAGCACCGAGAGACTGGAGGCAATTAACTGCCCTTCTGATGCG,"Intron (Gm13219-201/Gm13219-201, intron 2 of 3)",2,9575836,9576343,508,1,Gm13220-201,-142236,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,8,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18771,cg27114102,-0.0000225,0.00000565,-3.977229619,0.0000868,loss,ns,0.00000834,0.00000961,0.868622853,0.385725421,pos,ns,-0.005340962,0.002814026,-1.897978799,0.058627642,neg,ns,1.231897575,0.000141302,0.0000968,1.460122924,0.145268964,pos,ns,0.860099163,Bcl9,Bcl9_Intron,3,97265820,97265869,97265868,97265869,50,-,ACACGCTTTAATTACAATATTGTAACACCAATTAGAGATCTATCTAATCG,"Intron (Bcl9-208/Bcl9, intron 1 of 3)",3,97216553,97297917,81365,2,Bcl9-208,32048,Bcl9-208,Bcl9,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,10,77578,ENSMUSG00000038256,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13766,cg01145947,-0.00000178,0.00000359,-0.497065886,0.619494926,loss,ns,0.00000529,0.00000609,0.868574277,0.385751958,pos,ns,-0.000128764,0.001785416,-0.072119721,0.942553139,neg,ns,0.025694156,-0.00000899,0.0000614,-0.146399218,0.8837014,neg,ns,0.918144685,Gabra3,Gabra3_Exon,X,72445262,72445311,72445310,72445311,50,-,TGCAGAAAATACAAAGGCATAACAGACGGCTATGAACCAGTCCATGGCCG,"Exon (Gabra3-201/Gabra3, exon 9 of 10)",20,72432681,72656186,223506,2,Gabra3-201,210875,Gabra3-201;Gabra3-202,Gabra3;Gabra3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,14396,ENSMUSG00000031343,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13042,cg11182416,-0.000000488,0.00000275,-0.1772344,0.85944002,loss,ns,-0.00000406,0.00000467,-0.868517944,0.385782734,neg,ns,-0.000369612,0.001369152,-0.269957164,0.787372828,neg,ns,0.103819577,-0.00000105,0.0000471,-0.022335409,0.982194773,neg,ns,0.903669028,Chd3,Chd3_Exon,11,69345136,69345185,69345184,69345185,50,-,CTGTGATGAAGGACCCTGCAGGCATCTGGCTGTAATTGGCGCCTGCGGCG,Promoter (<=1kb),11,69343273,69346019,2747,2,Chd3-205,834,Chd3-205;Chd3-203;Chd3-202;Chd3-211;Chd3-201;Chd3-204;Chd3-208;Rnf227-201;Rnf227-203;Rnf227-202,Chd3;Chd3;Chd3;Chd3;Chd3;Chd3;Chd3;Rnf227;Rnf227;Rnf227,0;0;0;0;0;0;0;4675;4365;4327,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,22,26,216848,ENSMUSG00000018474,conserved gene but different region,11,69345175,69345252,78,*,78,10,0.769230769,0.870535714,0.128205128,4.96E-09,CpGisland,TRUE,U10,Tr-S
13412,cg06992486,-0.00000707,0.00000262,-2.70144842,0.007283676,loss,ns,0.00000386,0.00000445,0.868459708,0.385814551,pos,ns,0.002532885,0.001303129,1.943694979,0.052836931,pos,ns,1.277062414,-0.000111948,0.0000448,-2.49802859,0.013006457,neg,ns,0.931877421,Nr2f2,Nr2f2_Intron,7,70381787,70381836,70381835,70381836,50,+,ATCTTTAATTCATCACTCTCAGCTGAAAGAGATTAGCAATGTCTAGCACG,"Intron (B130024G19Rik-202/B130024G19Rik-202, intron 1 of 10)",7,70354439,70366735,12297,2,Nr2f2-202,-15052,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,69,11819,ENSMUSG00000030551,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6466,cg04130516,-0.000000966,0.00000101,-0.955957779,0.339838444,loss,ns,0.00000149,0.00000172,0.868434013,0.38582859,pos,ns,0.000750504,0.000502778,1.492715179,0.136528764,pos,ns,0.86477584,-0.0000257,0.0000173,-1.489251273,0.137437844,neg,ns,0.970227225,Rc3h2,Rc3h2_threeUTR,2,37370557,37370606,37370605,37370606,50,+,TACATTTCAATCGAACAATAGATTTGCAAAGAAAATGTCTAATACAGACG,3' UTR,2,37370069,37422903,52835,2,Rc3h2-202,52297,Rc3h2-202;Rc3h2-201;Rc3h2-203;Rc3h2-205,Rc3h2;Rc3h2;Rc3h2;Rc3h2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,7,10,319817,ENSMUSG00000075376,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14197,cg18308012,0.0000683,0.00000614,11.1184306,2.16E-24,gain,yes,0.00000906,0.0000104,0.868318396,0.385891764,pos,ns,0.004628068,0.003056126,1.51435749,0.130954085,pos,ns,0.882880948,-0.0000711,0.0001051,-0.676430906,0.499271472,neg,ns,0.134701634,Gm28230,Gm28230_threeUTR,2,74746516,74746565,74746516,74746517,50,+,CGCATGAAGTACAAGAAGGACCAGAAGGCCAAGGGCATCCTGCACTCGCC,3' UTR,2,74726728,74747918,21191,1,Gm28230-201,19788,Gm28230-201;Hoxd3-203;Hoxd3-205;Hoxd3-202;Hoxd3-201;Hoxd3-204;Hoxd3-206,Gm28230;Hoxd3;Hoxd3;Hoxd3;Hoxd3;Hoxd3;Hoxd3,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,23,,NA,mapped to different genes,2,74746429,74746517,89,*,89,10,0.629213483,1.148387097,0.112359551,1.95E-08,CpGisland,TRUE,U13,Hc-P
4071,cg18591379,-0.00000566,0.00000329,-1.721722724,0.08611731,loss,ns,0.00000485,0.00000559,0.868228683,0.385940788,pos,ns,-0.003503472,0.001636888,-2.140325045,0.033108617,neg,ns,1.480058959,0.0000623,0.0000563,1.107339166,0.26900579,pos,ns,0.92889935,Il1rap,Il1rap_threeUTR,16,26714723,26714772,26714771,26714772,50,+,CTTCATTCAGAAAAGCAGACGCCTCCTGGTTGTTCTAAGCCCCAACTACG,3' UTR,16,26581704,26725264,143561,1,Il1rap-202,133019,Il1rap-202;Il1rap-203;Il1rap-201;Il1rap-205,Il1rap;Il1rap;Il1rap;Il1rap,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,3,16180,ENSMUSG00000022514,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10056,cg00975228,-0.00000083,0.00000105,-0.792180789,0.428861046,loss,ns,0.00000155,0.00000178,0.867910486,0.386114699,pos,ns,0.001182952,0.000521761,2.267231114,0.024064477,pos,ns,1.618623575,-0.0000259,0.0000179,-1.444561429,0.149591081,neg,ns,0.031583567,Maml3,Maml3_fiveUTR,3,52104717,52104766,52104765,52104766,50,-,ACTTTGGCTGCTCAGTTGCATTTCACAGGAACCTAGATATCGAATCCTCG,Promoter (<=1kb),3,51685907,52105076,419170,2,Maml3-202,310,Maml3-202,Maml3,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,14,32,433586,ENSMUSG00000061143,conserved gene and region,3,52104757,52105132,376,*,376,44,0.686170213,1.011741683,0.117021277,5.57E-37,CpGisland,TRUE,U1,Pr-A
12628,cg23622328,0.000000769,0.00000211,0.364505906,0.71572878,gain,ns,-0.00000311,0.00000358,-0.867893037,0.386124238,neg,ns,-0.000985994,0.001050078,-0.938971894,0.348476191,neg,ns,0.457826889,0.0000232,0.0000361,0.641389503,0.521743571,pos,ns,0.951242545,Csnk1g1,Csnk1g1_Exon,9,66012750,66012799,66012798,66012799,50,+,ACTCCAGTAGGGTCAGTTCACGTAGATTCTGGTGCATCTGCAATAACTCG,"Exon (Csnk1g1-209/Csnk1g1, exon 10 of 12)",9,65908924,66041906,132983,1,Csnk1g1-209,103826,Csnk1g1-209;Csnk1g1-212;Csnk1g1-201;Csnk1g1-214;Csnk1g1-202;Csnk1g1-204;Csnk1g1-213;Csnk1g1-217;Csnk1g1-211;Csnk1g1-207;Csnk1g1-215;Csnk1g1-205,Csnk1g1;Csnk1g1;Csnk1g1;Csnk1g1;Csnk1g1;Csnk1g1;Csnk1g1;Csnk1g1;Csnk1g1;Csnk1g1;Csnk1g1;Csnk1g1,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,4,214897,ENSMUSG00000032384,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16942,cg24396988,-0.00000167,0.00000655,-0.25513377,0.798788965,loss,ns,-0.00000966,0.0000111,-0.86776563,0.386193886,neg,ns,-0.005693647,0.003259759,-1.746646333,0.081689119,neg,ns,1.087835787,-0.0000539,0.000112103,-0.481099895,0.630784893,neg,ns,0.744385472,Calm2,Calm2_Intergenic_upstream,17,87522085,87522134,87522133,87522134,50,+,GAATGTAATTAGGTTGTCATCCTGGGGCCTCCGAGCCAGGCTTCCGAACG,Distal Intergenic,17,87435626,87446935,11310,2,Calm2-205,-75150,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,3,12314,ENSMUSG00000036438,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9717,cg00242883,-0.000048,0.0000145,-3.312146324,0.001035303,loss,ns,0.0000214,0.0000246,0.867713999,0.386222114,pos,ns,-0.006890327,0.007216495,-0.954802452,0.340421548,neg,ns,0.467982957,-0.000175598,0.000248175,-0.707556624,0.479752225,neg,ns,0.454160808,Prkd1,Prkd1_Intergenic_downstream,12,50259152,50259201,50259152,50259153,50,+,CGAATCCTCCTGGAGACAAAAGAAAGAATTGGTTCCAGTGCCTTTTTCAA,Distal Intergenic,12,50341231,50649098,307868,2,Prkd1-201,389897,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,8,18760,ENSMUSG00000002688,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7173,cg24177179,0.000000527,0.0000019,0.277459965,0.78161188,gain,ns,-0.0000028,0.00000323,-0.867713825,0.386222209,neg,ns,-0.00145636,0.000945613,-1.54012213,0.124550687,neg,ns,0.904653873,0.0000715,0.0000325,2.198784505,0.02863175,pos,ns,0.946687111,Lcor,Lcor_Exon,19,41558913,41558962,41558961,41558962,50,-,GGGGCTCAGATGCTGAGCAGTCTACCTCTGGACAGCCATATCCCACATCG,"Exon (Lcor-201/Lcor, exon 8 of 8)",19,41482637,41562261,79625,1,Lcor-201,76276,Lcor-201;Lcor-204;Lcor-206;Lcor-202;Lcor-205,Lcor;Lcor;Lcor;Lcor;Lcor,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,25,212391,ENSMUSG00000025019,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20726,cg25539758,0.000067,0.0000161,4.171461857,0.0000393,gain,ns,-0.0000237,0.0000273,-0.867406926,0.386390019,neg,ns,0.030001751,0.007996252,3.751976444,0.000209383,pos,ns,3.679058607,-0.000999723,0.00027499,-3.635482137,0.00032475,neg,ns,0.35886875,Cstf3,Cstf3_Exon,2,104663255,104663304,104663303,104663304,50,+,CTTTTTCAGGTTTAGGATTCTTCTGTTCTGCATTTTCAGGATGTCTCCCG,"Exon (Cstf3-201/Cstf3, exon 18 of 21)",2,104590523,104665429,74907,1,Cstf3-201,72732,Cstf3-201;Cstf3-203;Cstf3-205;Cstf3-204;Tcp11l1-204,Cstf3;Cstf3;Cstf3;Cstf3;Tcp11l1,0;0;0;-362;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,6,228410,ENSMUSG00000027176,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8427,cg14421309,0.0000114,0.00000395,2.894413483,0.004068169,gain,ns,-0.00000582,0.00000671,-0.867392104,0.386398125,neg,ns,-0.003336061,0.001964748,-1.697958695,0.090519047,neg,ns,1.043260028,0.000180224,0.0000676,2.667312045,0.008047709,pos,ns,0.095729007,Zeb2,Zeb2_fiveUTR,2,45113003,45113052,45113051,45113052,50,+,TGATCTCTTTCGGCCACTCCAGGAAACACAAACCTGGGGACGGACTGACG,5' UTR,2,44983632,45117395,133764,2,Zeb2-212,4343,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219;Zeb2-211;Zeb2-210;Zeb2-205;Zeb2-223;Zeb2-217;Zeb2-225;Zeb2-204;Zeb2-206;Zeb2-230,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;-2927;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,15,158,24136,ENSMUSG00000026872,mapped to different genes,2,45112883,45113059,177,*,177,11,0.548022599,0.842857143,0.062146893,0.00000144,CpGisland,TRUE,U1,Pr-A
19950,cg08934442,0.0000255,0.0000179,1.420687324,0.156412709,gain,ns,0.0000264,0.0000305,0.867388042,0.386400346,pos,ns,0.038100702,0.008922498,4.270183198,0.000026,pos,ns,4.58502221,-0.000790004,0.000306844,-2.574610817,0.010499062,neg,ns,0.750453973,Clpb,Clpb_Intron,7,101742048,101742097,101742096,101742097,50,+,GGGATTTAAAATCCAATCATATCCCTGAATCAAGCCTTCTAGCCTCCCCG,"Intron (Clpb-201/Clpb, intron 5 of 15)",7,101663633,101790168,126536,1,Clpb-201,78415,Clpb-201;Clpb-202;Clpb-211;Clpb-208;Clpb-207;Clpb-210,Clpb;Clpb;Clpb;Clpb;Clpb;Clpb,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,21,21,20480,ENSMUSG00000001829,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22262,cg00553886,0.00000833,0.00000558,1.493469878,0.136331319,gain,ns,0.00000822,0.00000947,0.867365746,0.386412539,pos,ns,-0.001389438,0.002775207,-0.500660967,0.616965013,neg,ns,0.209739463,0.0000861,0.0000954,0.902541276,0.367470138,pos,ns,0.059340236,Tead1,Tead1_Promoter,7,112680122,112680171,112680122,112680123,50,+,CGCTTCATTGCACATTCAAGTGGAAAATTTTCAGGAGTCAGCAGAAACAT,Promoter (<=1kb),7,112679318,112899459,220142,1,Tead1-203,804,Tead1-203;Tead1-216;Tead1-217;Tead1-201;Tead1-204;Tead1-214,Tead1;Tead1;Tead1;Tead1;Tead1;Tead1,0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,2,16,21676,ENSMUSG00000055320,conserved gene but different region,7,112679104,112680123,1020,*,1020,157,0.766666667,1.058559899,0.153921569,1.21E-152,CpGisland,TRUE,NA,NRS
15384,cg04769602,0.0000017,0.00000671,0.252988662,0.800444654,gain,ns,0.00000989,0.0000114,0.867341968,0.386425543,pos,ns,-0.008812033,0.003341927,-2.636811861,0.008790551,neg,ns,2.055983901,0.0001312,0.000114929,1.141579938,0.254509707,pos,ns,0.630905299,Gria2,Gria2_threeUTR,3,80688549,80688598,80688597,80688598,50,+,ATCACGAGAGATCAGTCACACTGACATTCATTCCCATGCCAGGACTCACG,3' UTR,3,80681450,80802835,121386,2,Gria2-201,114237,Gria2-201;Gria2-202;Gria2-203;Gria2-206,Gria2;Gria2;Gria2;Gria2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,12,19,14800,ENSMUSG00000033981,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15955,cg18227360,-0.0000207,0.00000926,-2.235301715,0.026109444,loss,ns,0.0000136,0.0000157,0.867329135,0.386432562,pos,ns,-0.000482303,0.00460953,-0.104631631,0.916735778,neg,ns,0.037755819,-0.000041,0.000158521,-0.258839728,0.795930687,neg,ns,0.793875289,Gm8447,Gm8447_Intergenic_downstream,13,83988058,83988107,83988106,83988107,50,+,AAAAAGTTAACAGCTTTCCTATTCATCTCTTTTGAGAAAATTTACAGTCG,Distal Intergenic,13,83997547,83998439,893,2,Gm8447-201,10332,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,9,667081,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11298,cg00211372,-0.0000143,0.00000545,-2.614483782,0.009372789,loss,ns,0.00000803,0.00000926,0.867200528,0.386502901,pos,ns,-0.001253673,0.00271413,-0.46190595,0.644472748,neg,ns,0.190795442,-0.000103969,0.0000933,-1.113892589,0.266188164,neg,ns,0.899841489,Rbmx,Rbmx_threeUTR,X,57387384,57387433,57387384,57387385,50,+,CGTGAGTTACCTGCAGGGTCAATGGTCAGGTAATATGGCAACACTATAAA,3' UTR,20,57383530,57392981,9452,2,Rbmx-205,5548,Rbmx-205;Rbmx-201;Rbmx-203;Rbmx-202;Rbmx-206;Rbmx-204,Rbmx;Rbmx;Rbmx;Rbmx;Rbmx;Rbmx,0;0;0;0;0;5364,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,6,19655,ENSMUSG00000031134,mapped to different genes,X,57387235,57387385,151,*,151,11,0.543046358,0.990459153,0.072847682,0.000000299,CpGisland,TRUE,NA,NRS
10982,cg18387472,-0.0000657,0.00000693,-9.471521135,7.35E-19,loss,yes,0.0000102,0.0000118,0.867194452,0.386506224,pos,ns,0.011666297,0.00345027,3.381270371,0.000813943,pos,ns,3.089406226,-0.000630385,0.000118655,-5.312775546,0.000000207,neg,yes,0.570608448,Gm50135,Gm50135_Intergenic_upstream,19,55999440,55999489,55999440,55999441,50,-,CGTTTTGGGGGCAAAGTCTGACTTACATCAACTCTGGAAAAAATGGATCT,Distal Intergenic,19,56012529,56012925,397,1,Gm50135-201,-13089,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,7,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7375,cg17495299,0.0000824,0.0000138,5.98564797,5.95E-09,gain,yes,-0.0000203,0.0000234,-0.867130813,0.386541034,neg,ns,0.02434822,0.006852629,3.553120969,0.000439925,pos,ns,3.35662091,-0.000481353,0.000235661,-2.042561989,0.041941506,neg,ns,0.303621682,Pou3f3,Pou3f3_Intergenic_upstream,1,42472559,42472608,42472559,42472560,50,-,CGTGATGTCAGGGCGCTAAGAGAATTTTAAATGCACAGGATGGATTGTTT,Distal Intergenic,1,42694925,42703176,8252,1,Pou3f3-202,-222366,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,37,18993,ENSMUSG00000045515,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16669,cg19455189,-0.00000613,0.00000776,-0.789673612,0.430321992,loss,ns,-0.0000114,0.0000132,-0.867069794,0.386574412,neg,ns,-0.006948316,0.003864034,-1.798202806,0.073117686,neg,ns,1.13597756,0.000279716,0.000132884,2.104968018,0.03609859,pos,ns,0.929095883,Itm2c,Itm2c_Exon,1,85907558,85907607,85907558,85907559,50,+,CGTGGGGCCAAGAACTGCAATGCCATCCGCCACTTCGAGAACACCTTCGT,"Exon (Itm2c-201/Itm2c, exon 6 of 6)",1,85894281,85908675,14395,1,Itm2c-201,13277,Itm2c-201;Itm2c-203;Itm2c-202,Itm2c;Itm2c;Itm2c,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,64294,ENSMUSG00000026223,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18930,cg25729868,0.000129533,0.0000207,6.260074981,1.28E-09,gain,yes,-0.0000305,0.0000352,-0.866994467,0.386615619,neg,ns,0.026635,0.0102986,2.586273872,0.010157715,pos,ns,1.993203997,-0.000702467,0.000354168,-1.983429904,0.048201455,neg,ns,0.503739835,Dach1,Dach1_Intron,14,97960883,97960932,97960883,97960884,50,+,CGATATTAACTAACAGATCTGCCCTTTGTGAAGGAAACCGTATCCGTTTC,"Intron (Dach1-201/Dach1, intron 3 of 10)",14,97786853,98169543,382691,2,Dach1-201,208611,Dach1-201;Dach1-202;Dach1-203,Dach1;Dach1;Dach1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,76,13134,ENSMUSG00000055639,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
918,cg17176038,0.00000709,0.00000196,3.611854836,0.0003545,gain,ns,-0.00000289,0.00000334,-0.86695806,0.386635536,neg,ns,-0.000172651,0.000977585,-0.176609222,0.859930673,neg,ns,0.06553656,0.0000605,0.0000336,1.800473406,0.07275787,pos,ns,0.05103462,Gdf6,Gdf6_Intron,4,9847302,9847351,9847350,9847351,50,-,TCTAATTGAGGGTTCATGTCATAACACATCAAACGGTGTCTCGTCTCCCG,"Intron (Gdf6-201/Gdf6, intron 1 of 1)",4,9844372,9862345,17974,1,Gdf6-201,2930,Gdf6-201,Gdf6,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,11,242316,ENSMUSG00000051279,conserved gene and region,4,9847226,9847435,210,*,210,17,0.580952381,0.959419511,0.080952381,1.02E-11,CpGisland,TRUE,NA,NRS
1041,cg01001202,-0.0000702,0.00000944,-7.437218346,1.02E-12,loss,yes,0.0000139,0.000016,0.866835466,0.386702608,pos,ns,-0.0169642,0.004697285,-3.611490144,0.000354979,neg,ns,3.449797835,0.000389487,0.000161539,2.411097361,0.016485973,pos,ns,0.810520042,Gm14485,Gm14485_Intergenic_upstream,X,11114040,11114089,11114088,11114089,50,-,ATAAAAGGCGTCTGCAAACACTGATTGTCGGCTGCTTTCCATAAAATACG,Distal Intergenic,20,11020515,11021007,493,2,Gm14485-201,-93082,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,9,547156,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16547,cg14674903,-0.000003,0.00000266,-1.128723919,0.259887041,loss,ns,0.00000391,0.00000451,0.866693978,0.386780026,pos,ns,0.001284749,0.001321974,0.971841453,0.331887104,pos,ns,0.479009623,0.0000408,0.0000455,0.896466667,0.370699194,pos,ns,0.959066877,Camkmt,Camkmt_Intron,17,85394105,85394154,85394153,85394154,50,-,ACAAACCTGTCGCTCTTATACAATGTGTCGAGGTTACAGCCCAATGTGCG,"Intron (Camkmt-201/Camkmt, intron 5 of 10)",17,85090552,85458588,368037,1,Camkmt-201,303553,Camkmt-201,Camkmt,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,41,44,73582,ENSMUSG00000071037,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
461,cg20047920,-0.00000257,0.00000109,-2.356342419,0.019077952,loss,ns,-0.00000161,0.00000185,-0.86658053,0.386842109,neg,ns,0.001204016,0.000542812,2.21810889,0.027271879,pos,ns,1.564284935,-0.0000489,0.0000187,-2.619647718,0.009235141,neg,ns,0.965819746,Upf2,Upf2_threeUTR,2,6055495,6055544,6055543,6055544,50,+,GGAGTCCTCCAGCAATTGAATGAGAGCAGTGGACACATCTCAGCAGGTCG,3' UTR,2,5951469,6056703,105235,1,Upf2-201,104026,Upf2-201;Upf2-202;Upf2-203,Upf2;Upf2;Upf2,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,5,326622,ENSMUSG00000043241,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2161,cg21633426,-0.0000898,0.0000161,-5.564878877,5.68E-08,loss,yes,0.0000238,0.0000274,0.866549804,0.386858924,pos,ns,-0.017074665,0.008035607,-2.124875503,0.034387851,neg,ns,1.463594964,-0.0000152,0.000276344,-0.055129968,0.956070435,neg,ns,0.764558372,Gm12019,Gm12019_Intergenic_downstream,11,18152740,18152789,18152788,18152789,50,-,TTTCTCTTGTAGTTCTAACCTCTAATACTCAACCATTACATCTTATCTCG,Distal Intergenic,11,18206413,18206944,532,2,Gm12019-201,54204,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,627696,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5065,cg25498212,-0.000000327,0.000000246,-1.329784151,0.184567014,loss,ns,0.000000362,0.000000418,0.866291847,0.387000113,pos,ns,0.000241089,0.000122408,1.969549191,0.049780173,pos,ns,1.302943595,-0.00000879,0.00000421,-2.087803767,0.037631621,neg,ns,0.006937385,Fosl2,Fosl2_fiveUTR,5,32136696,32136745,32136696,32136697,50,-,CGCGGATCATGTACCAGGATTATCCCGGGAACTTTGACACCTCGTCCCGG,Promoter (<=1kb),5,32135801,32157842,22042,1,Fosl2-201,895,Fosl2-201;Fosl2-202,Fosl2;Fosl2,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,8,14284,ENSMUSG00000029135,conserved gene and region,5,32136243,32136838,596,*,596,67,0.686241611,0.96036556,0.112416107,9.84E-55,CpGisland,TRUE,U1,Pr-A
17066,cg17519004,0.0000082,0.00000588,1.393603545,0.164435634,gain,ns,0.00000866,0.00000999,0.866267068,0.387013677,pos,ns,0.004430092,0.002927262,1.513390928,0.131199211,pos,ns,0.882068776,-0.0000351,0.000100668,-0.348655744,0.727584445,neg,ns,0.048432349,Gata2,Gata2_Promoter,6,88189728,88189777,88189728,88189729,50,+,CGTCGCAGGTTGTGTGACTTTGGGTTTGACCTGCCTGGAGATGAGCTAAT,Promoter (4-5kb),6,88193891,88207032,13142,1,Gata2-202,-4114,Gata2-202,Gata2,0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,7,12,14461,ENSMUSG00000015053,mapped to different genes,6,88189555,88189732,178,*,178,24,0.758426966,0.937664618,0.134831461,5.25E-22,CpGisland,TRUE,U3,Pr-B
9498,cg10740273,0.0000211,0.0000159,1.326347277,0.185701011,gain,ns,-0.0000234,0.000027,-0.866177414,0.387062756,neg,ns,-0.021357188,0.00791187,-2.69938548,0.007327922,neg,ns,2.135019174,0.000703796,0.000272089,2.586642718,0.010147083,pos,ns,0.815746454,Fam120a,Fam120a_Exon,13,48910374,48910423,48910374,48910375,50,+,CGGAGGCAGGTCCTTGTTGGCTTCATCTTCAATAGAAACAGCAATTTTGA,"Exon (Fam120a-201/Fam120a, exon 10 of 18)",13,48879219,48968017,88799,2,Fam120a-201,57594,Fam120a-201,Fam120a,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,8,218236,ENSMUSG00000038014,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12694,cg13869505,0.00000103,0.00000311,0.329843789,0.741740772,gain,ns,0.00000457,0.00000528,0.866166561,0.387068698,pos,ns,0.002337502,0.001547144,1.510849611,0.13184541,pos,ns,0.879934983,-0.00012599,0.0000532,-2.367963719,0.018499689,neg,ns,0.948864749,Gm17952,Gm17952_Intergenic_upstream,3,66701371,66701420,66701419,66701420,50,-,GAGCAGTGTTAACATCTGTTCCATTATTTCCAGAGGACGTTGGTTGAACG,Distal Intergenic,3,66562805,66563551,747,2,Gm17952-201,-137869,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,5,100416166,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1001,cg11915899,-0.0000242,0.00000487,-4.966525238,0.00000113,loss,yes,-0.00000717,0.00000828,-0.866055532,0.387129484,neg,ns,-0.004834673,0.002424553,-1.994046918,0.047022648,neg,ns,1.327692922,0.0000891,0.0000834,1.069086614,0.285862388,pos,ns,0.883285093,Gm48886,Gm48886_Intron,12,10474080,10474129,10474128,10474129,50,+,GAGAACATGGGATTCCACTTCCATTCATCTTCCTTATTTTGCAAACACCG,"Intron (Gm38407-202/Gm38407-202, intron 6 of 11)",12,10493500,10494199,700,1,Gm48886-201,-19371,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21213,cg23916624,-0.000000252,0.00000169,-0.148841079,0.881775812,loss,ns,-0.00000249,0.00000287,-0.866015565,0.387151367,neg,ns,0.00120714,0.000841178,1.435058275,0.152278609,pos,ns,0.817361099,-0.000054,0.0000289,-1.868285725,0.062665412,neg,ns,0.951137457,Ddx5,Ddx5_threeUTR,11,106783266,106783315,106783266,106783267,50,-,CGCTTCCAAGAAGCCAGGATTCACTTGAGAATGTGTCTCTCTCTGGCAGG,3' UTR,11,106780355,106788532,8178,2,Ddx5-201,5217,Ddx5-201;Ddx5-208;Ddx5-205;Ddx5-207;Ddx5-203;Ddx5-202;Ddx5-209;Ddx5-206;Ddx5-204;Polg2-201;Polg2-203;Polg2-206;Polg2-204;Polg2-202,Ddx5;Ddx5;Ddx5;Ddx5;Ddx5;Ddx5;Ddx5;Ddx5;Ddx5;Polg2;Polg2;Polg2;Polg2;Polg2,0;0;0;0;0;0;2735;0;0;-3751;-3729;-3793;-3793;-3764,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,5,6,13207,ENSMUSG00000020719,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24481,cg22539736,-0.00000296,0.00000317,-0.935189774,0.350418413,loss,ns,-0.00000466,0.00000538,-0.865955473,0.387184269,neg,ns,0.000277515,0.001576958,0.175981503,0.860423376,pos,ns,0.065287799,-0.0000338,0.0000542,-0.623959192,0.533113258,neg,ns,0.884756464,Atxn2l,Atxn2l_Exon,7,126492744,126492793,126492792,126492793,50,+,TAATGAGAACTCACGAATCCTGTCATCGGCTCCTCCTGGAAATCCAGGCG,"Exon (Atxn2l-203/Atxn2l, exon 22 of 22)",7,126491708,126503437,11730,2,Atxn2l-201,10644,Atxn2l-201;Atxn2l-203;Atxn2l-206;Atxn2l-205;Atxn2l-202;Tufm-201;Tufm-202;Tufm-203;Tufm-204;Tufm-205;Tufm-206,Atxn2l;Atxn2l;Atxn2l;Atxn2l;Atxn2l;Tufm;Tufm;Tufm;Tufm;Tufm;Tufm,0;0;0;0;0;5383;5366;5115;4130;4058;3373,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,13,233871,ENSMUSG00000032637,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20214,cg20757917,0.0000492,0.00000606,8.113593958,1.16E-14,gain,yes,-0.00000892,0.0000103,-0.865950316,0.387187093,neg,ns,0.007266478,0.00301834,2.407442123,0.016648785,pos,ns,1.778617458,0.0000243,0.0001038,0.234446968,0.814792768,pos,ns,0.155708726,Hoxc11,Hoxc11_Exon,15,102949835,102949884,102949883,102949884,50,+,AATAGATGGCTGTTTATGACAACGAGGCTCTCCAAGTTTGGGGCCAGGCG,Promoter (4-5kb),15,102954427,102957708,3282,1,Hoxc11-201,-4543,Hoxc11-201,Hoxc11,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,24,109663,ENSMUSG00000001656,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
3808,cg11141605,0.0000252,0.0000069,3.651881809,0.000305498,gain,ns,0.0000102,0.0000117,0.865853698,0.387239999,pos,ns,0.008902422,0.003435524,2.591285171,0.010014122,pos,ns,1.999387135,-0.000139192,0.000118147,-1.178123414,0.23965099,neg,ns,0.642497775,Celf4,Celf4_Exon,18,25491107,25491156,25491107,25491108,50,+,CGATCCACAAACACTTTCGAGGAGATGACATTACCGAAAGGGAGGAACAT,"Exon (Celf4-202/Celf4, exon 11 of 13)",18,25477632,25753983,276352,2,Celf4-202,262827,Celf4-202;Celf4-201;Celf4-203;Celf4-207;Celf4-206;Celf4-208;Celf4-210,Celf4;Celf4;Celf4;Celf4;Celf4;Celf4;Celf4,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,31,59,108013,ENSMUSG00000024268,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4513,cg06647284,-0.00000044,0.00000245,-0.179439309,0.857709995,loss,ns,-0.0000036,0.00000416,-0.865746198,0.387298869,neg,ns,0.00273843,0.00121975,2.24507476,0.02546805,pos,ns,1.5940043,-0.000144497,0.0000419,-3.444736937,0.000650352,neg,ns,0.933868373,Calu,Calu_Exon,6,29361331,29361380,29361379,29361380,50,-,TTTGTCACTGTGGATGAGCTCAAAGACTGGATTAAATTTGCACAAAAGCG,"Exon (Calu-208/Calu, exon 3 of 5)",6,29348069,29374503,26435,1,Calu-207,13262,Calu-207;Calu-208;Calu-206;Calu-201;Calu-202;Calu-209;Calu-204,Calu;Calu;Calu;Calu;Calu;Calu;Calu,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,9,12321,ENSMUSG00000029767,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
689,cg20778702,-0.0000174,0.00000526,-3.315830065,0.001022218,loss,ns,0.00000773,0.00000893,0.865604716,0.387376357,pos,ns,-0.006621315,0.002616793,-2.530317206,0.011890729,neg,ns,1.924791508,0.000022,0.00009,0.244061018,0.807345008,pos,ns,0.898922804,Gm49535,Gm49535_Intergenic_downstream,16,8079007,8079056,8079055,8079056,50,+,AGTTGATACAAGCTTCTCCCTGCCATAGGCACCACTATTGATGAACGTCG,Distal Intergenic,16,8103374,8103788,415,2,Gm49535-201,24732,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,5,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19945,cg15719056,0.000000353,0.00000273,0.129161864,0.897313331,gain,ns,-0.00000402,0.00000465,-0.865598093,0.387379985,neg,ns,-0.00325317,0.00136114,-2.390032516,0.017443868,neg,ns,1.758357214,0.000108504,0.0000468,2.317988769,0.021100579,pos,ns,0.887130149,Clpb,Clpb_Intron,7,101714132,101714181,101714180,101714181,50,+,TTTTACTGCACTGCTCCCTAGTATCTCAGATTCATCTTCCCTGACGCACG,"Intron (Clpb-205/Clpb, intron 4 of 5)",7,101663633,101722922,59290,1,Clpb-205,50499,Clpb-205;Clpb-201;Clpb-202;Clpb-211;Clpb-208;Clpb-207;Clpb-210,Clpb;Clpb;Clpb;Clpb;Clpb;Clpb;Clpb,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,21,21,20480,ENSMUSG00000001829,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6808,cg15697832,-0.00000344,0.00000366,-0.940409623,0.347739684,loss,ns,0.00000538,0.00000621,0.865447578,0.387462431,pos,ns,0.000768083,0.001820177,0.421982619,0.673330195,pos,ns,0.171771909,-0.0000616,0.0000626,-0.983889138,0.325937289,neg,ns,0.925484222,Nek6,Nek6_Intron,2,38572193,38572242,38572193,38572194,50,-,CGTCAGACGAATTACCAGGCAGCAGATCATATTTGTCAGGAAGGATTGCA,"Intron (Nek6-201/Nek6, intron 7 of 9)",2,38511643,38594606,82964,1,Nek6-201,60550,Nek6-201;Nek6-203;Nek6-202,Nek6;Nek6;Nek6,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,5,59126,ENSMUSG00000026749,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3898,cg12805461,0.000024,0.00000901,2.658638822,0.008252981,gain,ns,0.0000133,0.0000153,0.865364611,0.387507881,pos,ns,-0.000383059,0.004486244,-0.085385258,0.932010231,neg,ns,0.03057932,0.0001808,0.000154282,1.171883915,0.242143516,pos,ns,0.777226937,5730522E02Rik,5730522E02Rik_Intron,11,25698020,25698069,25698068,25698069,50,-,GAGCCACCAGATAATTACACAGTATTTGTGCGGTTCCAGGAAGCTTCCCG,"Intron (5730522E02Rik-202/5730522E02Rik, intron 2 of 5)",11,25617668,26210569,592902,2,5730522E02Rik-202,512500,5730522E02Rik-202;5730522E02Rik-201;5730522E02Rik-208,5730522E02Rik;5730522E02Rik;5730522E02Rik,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,90,70626,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26449,cg24690575,0.0000342,0.00000708,4.826861341,0.00000218,gain,ns,-0.0000104,0.000012,-0.865226671,0.387583455,neg,ns,0.007200027,0.003522099,2.044243292,0.041774133,pos,ns,1.379092553,-0.0000693,0.000121125,-0.571957659,0.567765164,neg,ns,0.052257249,Foxa2,Foxa2_Exon,2,148044348,148044397,148044396,148044397,50,+,CAGCGTCAGCATCTTGTTGGGGCTCTGCTGGATGGCCATGGTGATGAGCG,"Exon (Foxa2-202/Foxa2, exon 2 of 2)",2,148042877,148045948,3072,2,Foxa2-202,1551,Foxa2-202;Foxa2-201;Foxa2-204;Foxa2-203,Foxa2;Foxa2;Foxa2;Foxa2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,25,15376,ENSMUSG00000037025,conserved gene and region,2,148044396,148044753,358,*,358,38,0.69273743,0.884813008,0.106145251,3.13E-30,CpGisland,TRUE,U3,Pr-B
5203,cg09298915,0.00000508,0.00000329,1.546352746,0.123039624,gain,ns,0.00000483,0.00000558,0.865172815,0.387612963,pos,ns,0.000834598,0.001635769,0.510217781,0.610261981,pos,ns,0.214483686,0.0000252,0.0000563,0.447701729,0.654681164,pos,ns,0.917471017,Gm8192,Gm8192_Intergenic_downstream,11,32752246,32752295,32752294,32752295,50,+,CAGATGGTGACATTCCATTAGCATATGGAATATTTTTCAAAACACATCCG,Distal Intergenic,11,32774682,32775639,958,2,Gm8192-201,23344,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,666616,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12202,cg03187032,-0.000000197,0.00000145,-0.136554327,0.891471718,loss,ns,-0.00000212,0.00000246,-0.86514028,0.38763079,neg,ns,0.000626628,0.000719293,0.871172244,0.384334261,pos,ns,0.415290899,-0.0000268,0.0000247,-1.084707973,0.27889386,neg,ns,0.961288,Map2k5,Map2k5_Intron,9,63339188,63339237,63339188,63339189,50,+,CGTTTAAAAAGAAATGAGGGTGACACCAAAATTAGCAGAGAGAAATGATT,"Intron (Map2k5-201/Map2k5, intron 4 of 21)",9,63163768,63377902,214135,2,Map2k5-201,38665,Map2k5-201;Map2k5-203,Map2k5;Map2k5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,34,37,23938,ENSMUSG00000058444,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14929,cg04839527,0.0000495,0.0000052,9.525624415,4.92E-19,gain,yes,0.00000764,0.00000883,0.864930417,0.387745793,pos,ns,0.00674647,0.002586506,2.608333987,0.009539114,pos,ns,2.020491972,-0.0000275,0.0000889,-0.308881826,0.757618904,neg,ns,0.124848787,Nr2f1,Nr2f1_Exon,13,78181648,78181697,78181696,78181697,50,+,TCACCAATAAAATTGGTCTCAGCATGGAGCGTAATTGCAACAAAGTGCCG,"Exon (3110006O06Rik-201/3110006O06Rik-201, exon 2 of 2)",13,78189872,78190443,572,2,Nr2f1-204,8746,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,25,55,13865,ENSMUSG00000069171,conserved gene and region,13,78181696,78181859,164,*,164,10,0.475609756,1.114130435,0.06097561,0.00000612,CpGisland,TRUE,U13,Hc-P
2031,cg18872965,-0.00000281,0.00000653,-0.430565923,0.667083221,loss,ns,-0.0000096,0.0000111,-0.864861143,0.387783759,neg,ns,-0.000433494,0.003250438,-0.13336466,0.893991525,neg,ns,0.048666598,-0.000235838,0.000111782,-2.109797817,0.035676982,neg,ns,0.818220771,Pcsk5,Pcsk5_Exon,19,17468999,17469048,17469047,17469048,50,+,CTCCCTATTTCCCTGTTACCTCTTTTGATTTGAACTTTCCACCTTCGTCG,"Exon (Pcsk5-201/Pcsk5, exon 28 of 38)",19,17432319,17837632,405314,2,Pcsk5-201,368584,Pcsk5-201,Pcsk5,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,7,18552,ENSMUSG00000024713,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26471,cg23791942,0.00000268,0.00000949,0.282494943,0.777752544,gain,ns,-0.0000139,0.0000161,-0.864617899,0.387917089,neg,ns,0.001129487,0.004721669,0.239213494,0.811098114,pos,ns,0.090926608,-0.000232106,0.000162378,-1.4294172,0.153891304,neg,ns,0.886952194,Gm572,Gm572_Intergenic_downstream,4,148706857,148706906,148706905,148706906,50,-,TTGAAAACGCTCCTTTTATATTCCTAATAAAATTATAGCAAAATACATCG,Distal Intergenic,4,148643317,148671572,28256,1,Gm572-201,63589,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,11,230909,ENSMUSG00000070577,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25357,cg21337763,-0.00000176,0.00000287,-0.611476067,0.541332604,loss,ns,0.00000422,0.00000488,0.864586758,0.38793416,pos,ns,0.002928568,0.001429467,2.048712476,0.041331988,pos,ns,1.383713711,-0.000102358,0.0000492,-2.08217629,0.03814621,neg,ns,0.94060292,Srsf10,Srsf10_Exon,4,135863691,135863740,135863739,135863740,50,-,ATTTTTACTCTAATTATATCTCTCCTCTGTTTTGAAAGATTCAAACACCG,"Exon (Srsf10-202/Srsf10, exon 6 of 6)",4,135855747,135865815,10069,1,Srsf10-202,7944,Srsf10-202;Srsf10-204;Srsf10-203;Srsf10-205;Srsf10-201;Srsf10-210;Srsf10-207;Srsf10-209;Srsf10-206;Srsf10-208,Srsf10;Srsf10;Srsf10;Srsf10;Srsf10;Srsf10;Srsf10;Srsf10;Srsf10;Srsf10,0;0;0;0;0;7579;7559;1903;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,Exon,1,1,14105,ENSMUSG00000028676,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9909,cg22134358,0.0000112,0.00000401,2.784373532,0.005692788,gain,ns,-0.00000589,0.00000682,-0.864566517,0.387945257,neg,ns,-0.002782328,0.001996844,-1.393362506,0.164508408,neg,ns,0.783811899,0.0000324,0.0000687,0.471737706,0.637445873,pos,ns,0.855120075,Gm46574,Gm46574_Intergenic_upstream,17,51536802,51536851,51536802,51536803,50,+,CGAGAGAGGAAAAAATTAGCGCAGCTTTAATTACTCATGCTGCTGGTTAA,Distal Intergenic,17,51484292,51484721,430,2,Gm46574-201,-52081,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,19,108168316,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5125,cg07011087,-0.0000371,0.00000986,-3.761947357,0.000201559,loss,ns,0.0000145,0.0000167,0.864515842,0.387973038,pos,ns,0.014115461,0.004906217,2.877055911,0.004292524,pos,ns,2.367287275,-0.001114165,0.000168724,-6.603462435,1.74E-10,neg,yes,0.843333933,Nkain2,Nkain2_Exon,10,32402289,32402338,32402289,32402290,50,-,CGATAATAATATGTACAAAATTTGCCAGGATAGGTGCCCACTGATATCCA,"Exon (Nkain2-203/Nkain2, exon 2 of 7)",10,31689310,32890461,1201152,2,Nkain2-203,488123,Nkain2-203;Nkain2-204;Nkain2-205;Nkain2-202,Nkain2;Nkain2;Nkain2;Nkain2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,5,432450,ENSMUSG00000069670,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
162,cg06598302,0.00000727,0.00000643,1.130768093,0.259026772,gain,ns,-0.00000944,0.0000109,-0.864110004,0.388195573,neg,ns,-0.005486284,0.003200315,-1.714294984,0.087474063,neg,ns,1.0581207,0.0000614,0.000110059,0.557512275,0.577579814,pos,ns,0.834144321,Gria4,Gria4_Exon,9,4432748,4432797,4432748,4432749,50,+,CGCTTTTGGTGACATTGAGGCTAACCTTGGAGTCACCTCCCCCGCTGCCA,"Exon (Gria4-204/Gria4, exon 14 of 16)",9,4417896,4796142,378247,2,Gria4-202,363345,Gria4-202;Gria4-204;Gria4-201,Gria4;Gria4;Gria4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,16,18,14802,ENSMUSG00000025892,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2583,cg03804354,0.0000275,0.0000136,2.019340138,0.044312182,gain,ns,0.00002,0.0000232,0.863942985,0.388287178,pos,ns,0.009551088,0.006783834,1.40791891,0.160157081,pos,ns,0.795453856,0.000112809,0.000233295,0.483543949,0.629050926,pos,ns,0.760168942,Rbm10,Rbm10_Exon,X,20641236,20641285,20641236,20641237,50,+,CGATGGATGGAAGCCAATCAGGTTGCTTTGCCGCACTTGAACCCCCCCCC,"Exon (Rbm10-205/Rbm10, exon 6 of 24)",20,20617503,20650888,33386,1,Rbm10-205,23733,Rbm10-205;Rbm10-204;Rbm10-203;Rbm10-206;Rbm10-201;Rbm10-202;Rbm10-207,Rbm10;Rbm10;Rbm10;Rbm10;Rbm10;Rbm10;Rbm10,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,14,236732,ENSMUSG00000031060,conserved gene and region,X,20641104,20641268,165,*,165,11,0.56969697,0.821638751,0.066666667,0.000000724,CpGisland,TRUE,U10,Tr-S
25853,cg23642006,0.0000883,0.000028,3.150789468,0.001787265,gain,ns,0.0000411,0.0000476,0.863845599,0.388340597,pos,ns,0.044488872,0.013950217,3.189116804,0.00157298,pos,ns,2.803276818,-0.001360486,0.000479747,-2.835841999,0.004871085,neg,ns,0.336908534,Pax7,Pax7_Intron,4,139767313,139767362,139767361,139767362,50,-,ATCACTTTGACTGAGTGGTTTTGTCTCCCCGCATTTTCCACTGTCAGGCG,"Intron (Pax7-201/Pax7, intron 7 of 8)",4,139737062,139833528,96467,2,Pax7-201,66166,Pax7-201;Pax7-202,Pax7;Pax7,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,27,18509,ENSMUSG00000028736,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13111,cg03510941,-0.0000153,0.0000059,-2.587285171,0.010128589,loss,ns,0.00000866,0.00001,0.863805832,0.388362412,pos,ns,0.005121649,0.00293654,1.744110169,0.082131064,pos,ns,1.085492553,-0.000193448,0.000100987,-1.915567276,0.056339967,neg,ns,0.904693855,Tcf4,Tcf4_Intron,18,69500279,69500328,69500279,69500280,50,+,CGGAGAGCTTCGACAGCTGCATTCATCATCATAAAATGTAATAATTAATG,"Intron (Tcf4-259/Tcf4, intron 5 of 6)",18,69343356,69564082,220727,1,Tcf4-259,156923,Tcf4-259;Tcf4-201;Tcf4-207;Tcf4-210;Tcf4-240;Tcf4-254;Tcf4-246;Tcf4-206;Tcf4-202;Tcf4-257;Tcf4-232;Tcf4-248;Tcf4-231;Tcf4-205;Tcf4-253;Tcf4-233;Tcf4-238;Tcf4-245;Tcf4-249;Tcf4-219;Tcf4-235;Tcf4-227;Tcf4-250;Tcf4-229;Tcf4-260;Tcf4-226;Tcf4-216;Tcf4-256,Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,42,66,21413,ENSMUSG00000053477,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8191,cg00046073,0.000137487,0.0000243,5.647974541,3.67E-08,gain,yes,-0.0000357,0.0000414,-0.863692292,0.3884247,neg,ns,0.050003697,0.012115608,4.127213184,0.0000472,pos,ns,4.325687802,-0.001831719,0.000416655,-4.396251218,0.0000152,neg,ns,0.413611196,Jarid2,Jarid2_fiveUTR,13,44840671,44840720,44840671,44840672,50,+,CGGAATCTGCACTGCCGCTTGCTTATTACGTACAGGGGAGGATTGTTGAC,Promoter (<=1kb),13,44840691,44914319,73629,1,Jarid2-211,0,Jarid2-212;Jarid2-210;Jarid2-201;Jarid2-209;Jarid2-203;Jarid2-208;Jarid2-215;Jarid2-216;Jarid2-206;Jarid2-205;Jarid2-202;Jarid2-211;Jarid2-207,Jarid2;Jarid2;Jarid2;Jarid2;Jarid2;Jarid2;Jarid2;Jarid2;Jarid2;Jarid2;Jarid2;Jarid2;Jarid2,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,8,21,16468,ENSMUSG00000038518,conserved gene but different region,13,44840615,44840747,133,*,133,10,0.62406015,0.781433608,0.07518797,0.000000942,CpGisland,TRUE,U2,Pr-W
18550,cg03451546,0.0000483,0.0000113,4.289407744,0.000024,gain,ns,-0.0000165,0.0000191,-0.863646456,0.388449848,neg,ns,-0.001540815,0.005609128,-0.27469777,0.783731421,neg,ns,0.105832741,0.000397522,0.000192897,2.060796186,0.040156416,pos,ns,0.220231638,Hoxb8,Hoxb8_threeUTR,11,96285226,96285275,96285274,96285275,50,-,GGCTAATTATATATTTTGTTGTTCCTCTATACTTTGTTCTGTTGTCTGCG,3' UTR,11,96281905,96285315,3411,1,Hoxb8-201,3321,Hoxb7-201;Hoxb7-202;Hoxb8-201;Hoxb8-202;Hoxb8-203,Hoxb7;Hoxb7;Hoxb8;Hoxb8;Hoxb8,0;-3440;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,26,15416,ENSMUSG00000056648,mapped to different genes,11,96285274,96285363,90,*,90,9,0.588888889,1.153846154,0.1,0.00000037,CpGisland,TRUE,U13,Hc-P
10128,cg12774429,-0.0000211,0.0000147,-1.440404642,0.150762128,loss,ns,-0.0000215,0.0000249,-0.863626831,0.388460615,neg,ns,-0.023106714,0.007301682,-3.164574295,0.001707268,neg,ns,2.767698238,0.000307213,0.000251104,1.223446566,0.222090219,pos,ns,0.740919207,Chd8,Chd8_threeUTR,14,52198216,52198265,52198264,52198265,50,+,GTATCCACAGTTCGGCCAGGAACAGGCTCTGCCAGAGGCTAGGGCCAGCG,3' UTR,14,52198151,52237572,39422,2,Chd8-201,39307,Chd8-201;Chd8-212;Chd8-215;Chd8-207;Chd8-216;Chd8-206;Chd8-209;Supt16-201,Chd8;Chd8;Chd8;Chd8;Chd8;Chd8;Chd8;Supt16,0;0;0;0;0;0;0;-800,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,12,67772,ENSMUSG00000053754,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
27761,cg08968773,-0.000046,0.00000806,-5.709608263,2.65E-08,loss,yes,0.0000118,0.0000137,0.863551074,0.388502181,pos,ns,-0.002991724,0.004010866,-0.745904644,0.456290244,neg,ns,0.340758816,-0.000131763,0.000137933,-0.955263696,0.340188677,neg,ns,0.825054488,Dusp10,Dusp10_Intergenic_downstream,1,184289998,184290047,184290046,184290047,50,-,TTAACTTGGCAATCCAGACTAATTTTTTCCTGTGAAGTGAGCCCAAGACG,Distal Intergenic,1,184034381,184075636,41256,1,Dusp10-201,255666,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,2,63953,ENSMUSG00000039384,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19668,cg04989171,-0.00000251,0.00000184,-1.362223525,0.174116294,loss,ns,0.0000027,0.00000313,0.863432333,0.388567337,pos,ns,0.000959932,0.000916348,1.047562649,0.295656213,pos,ns,0.52921299,-0.000022,0.0000315,-0.697706468,0.485883745,neg,ns,0.951040994,Klhl10,Klhl10_Exon,11,100447124,100447173,100447124,100447125,50,+,CGCCTGGCCCTAATGCATGCTGAGTACTTCATGAACAATGTTAAGATGAA,"Exon (Klhl10-201/Klhl10, exon 3 of 5)",11,100441917,100457022,15106,1,Klhl10-201,5207,Klhl10-201;Klhl10-202,Klhl10;Klhl10,0;5197,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,66720,ENSMUSG00000001558,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13277,cg14612067,-0.0000109,0.00000235,-4.640157697,0.00000514,loss,ns,0.00000344,0.00000399,0.86342767,0.388569896,pos,ns,-0.002980236,0.001168057,-2.551446549,0.011207571,neg,ns,1.950488495,0.0000649,0.0000402,1.614706316,0.107391629,pos,ns,0.945499376,Ank3,Ank3_Exon,10,69988973,69989022,69988973,69988974,50,+,CGATGAGTTGTCAGAACTAAGAGGGGAGTCTTACAGGTTTGCTGAGAAAA,"Exon (Ank3-244/Ank3, exon 6 of 9)",10,69398996,70023957,624962,1,Ank3-247,589977,Ank3-247;Ank3-231;Ank3-210;Ank3-239;Ank3-240;Ank3-220;Ank3-201;Ank3-202;Ank3-203;Ank3-204;Ank3-206;Ank3-233;Ank3-221;Ank3-232;Ank3-228;Ank3-205;Ank3-215;Ank3-237;Ank3-242;Ank3-208;Ank3-227;Ank3-207;Ank3-230;Ank3-219;Ank3-244;Ank3-238;Ank3-213;Ank3-224;Ank3-236;Ank3-225;Ank3-243,Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,13,11735,ENSMUSG00000069601,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U14,Hc-H
15156,cg04860548,0.0000606,0.0000071,8.533901759,6.40E-16,gain,yes,-0.0000104,0.0000121,-0.863373795,0.388599461,neg,ns,0.004609459,0.003535591,1.30373083,0.193292689,pos,ns,0.713784572,-0.0000549,0.000121589,-0.451203527,0.652158333,neg,ns,0.08963524,Cerkl,Cerkl_Promoter,2,79456957,79457006,79457005,79457006,50,-,TTTGTGGCCAGAAGAAAGTGGCCCATCTGTCGCCAGTTAGAGACTCCGCG,Promoter (<=1kb),2,79338569,79456785,118217,2,Cerkl-210,-221,Cerkl-210;Neurod1-201,Cerkl;Neurod1,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,13,15,228094,ENSMUSG00000075256,mapped to different genes,2,79456843,79457022,180,*,180,14,0.622222222,0.830039526,0.077777778,1.72E-09,CpGisland,TRUE,U13,Hc-P
26280,cg04342828,0.0000406,0.00000364,11.15936399,1.56E-24,gain,yes,-0.00000534,0.00000619,-0.863237245,0.388674401,neg,ns,0.002010946,0.001812381,1.109560086,0.268048616,pos,ns,0.571786431,0.0000839,0.0000623,1.34659309,0.179095014,pos,ns,0.090030931,Insm1,Insm1_Exon,2,146223690,146223739,146223690,146223691,50,+,CGCCGCCCAGGTGTTCCCCTGCAAGTACTGCCCGGCCACCTTCTACAGCT,"Exon (Insm1-201/Insm1, exon 1 of 1)",2,146221921,146225020,3100,1,Insm1-201,1769,Insm1-201,Insm1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,53626,ENSMUSG00000068154,conserved gene and region,2,146221662,146223777,2116,*,2116,283,0.75,0.952043905,0.133742911,1.29E-253,CpGisland,TRUE,NA,NRS
3310,cg26430299,-0.00000346,0.000000758,-4.558232471,0.00000743,loss,ns,0.00000111,0.00000129,0.863084532,0.388758223,pos,ns,-0.001278505,0.000377478,-3.386966139,0.000797826,neg,ns,3.098091931,0.000023,0.000013,1.771757627,0.077417108,pos,ns,0.99058514,Kcnma1,Kcnma1_threeUTR,14,23526561,23526610,23526609,23526610,50,+,TCCCGCCGAATTTATTCCGACTCAGGATGAGAGCAGCAATTTCGGGCACG,3' UTR,14,23289431,23803304,513874,2,Kcnma1-207,276694,Kcnma1-207;Kcnma1-210;Kcnma1-205;Kcnma1-201;Kcnma1-208;Kcnma1-209;Kcnma1-212;Kcnma1-204;Kcnma1-202;Kcnma1-211;Kcnma1-229;Kcnma1-234;Kcnma1-223;Kcnma1-214;Kcnma1-216;Kcnma1-219;Kcnma1-220;Kcnma1-224;Kcnma1-233;Kcnma1-236;Kcnma1-237;Kcnma1-213;Kcnma1-228;Kcnma1-203;Kcnma1-206;Kcnma1-221;Kcnma1-225;Kcnma1-226;Kcnma1-230;Kcnma1-235;Kcnma1-217;Kcnma1-238;Kcnma1-231;Kcnma1-218;Kcnma1-222;Kcnma1-232,Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,13,41,16531,ENSMUSG00000063142,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15966,cg10860298,0.0000681,0.000011,6.187482427,1.93E-09,gain,yes,0.0000161,0.0000187,0.862613561,0.389016799,pos,ns,0.01344375,0.005476607,2.454758783,0.014647158,pos,ns,1.834246619,-0.000219495,0.00018834,-1.1654204,0.244744797,neg,ns,0.424019379,Gm8447,Gm8447_Intergenic_upstream,13,84065725,84065774,84065773,84065774,50,-,TTGCTGAGGGCAGGCTAAAACACTACACAGACTCTCACTTTCAAATCCCG,Distal Intergenic,13,83997547,83998439,893,2,Gm8447-201,-67335,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,9,667081,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11387,cg19604874,-0.0000156,0.00000397,-3.938206266,0.000101442,loss,ns,0.00000582,0.00000674,0.862590977,0.389029201,pos,ns,-0.0000653,0.001975204,-0.033056807,0.97365056,neg,ns,0.011596882,-0.0000692,0.0000679,-1.018468865,0.309249371,neg,ns,0.948327907,Pcdh7,Pcdh7_threeUTR,5,57913162,57913211,57913162,57913163,50,-,CGTAGAGTGACGTTTTCTGTTGTGAGTCAGCCTCAGGACCCACATCAGGG,3' UTR,5,57717967,58133230,415264,1,Pcdh7-203,195195,Pcdh7-203;Pcdh7-202;Pcdh7-205;Pcdh7-206;Pcdh7-207;Pcdh7-204,Pcdh7;Pcdh7;Pcdh7;Pcdh7;Pcdh7;Pcdh7,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,13,54216,ENSMUSG00000029108,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8504,cg08174373,0.0000278,0.00000467,5.955415871,7.03E-09,gain,yes,0.00000685,0.00000794,0.862588362,0.389030636,pos,ns,-0.000837813,0.002325968,-0.360199441,0.718943279,neg,ns,0.143305372,0.000176171,0.00008,2.202412624,0.028372051,pos,ns,0.074475924,Lbx1,Lbx1_Promoter,19,45235896,45235945,45235944,45235945,50,-,CTGTCTGTCCAATGCAGGCGGCTGTAAGTTGGGAAGCTCATTAATTAGCG,Promoter (<=1kb),19,45232684,45235812,3129,2,Lbx1-201,-133,Lbx1-201,Lbx1,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,50,16814,ENSMUSG00000025216,conserved gene but different region,19,45235851,45236024,174,*,174,12,0.609195402,0.760655738,0.068965517,0.00000013,CpGisland,TRUE,U3,Pr-B
4443,cg07933199,0.0000828,0.0000101,8.189366374,6.94E-15,gain,yes,-0.0000148,0.0000172,-0.86254377,0.389055125,neg,ns,0.008340386,0.005030021,1.658121688,0.098304392,pos,ns,1.007427079,-0.00023739,0.000172982,-1.372337928,0.170950389,neg,ns,0.05866979,Mb21d2,Mb21d2_fiveUTR,16,28929622,28929671,28929670,28929671,50,+,CAGGGAGGCTGCCTTGTTGGCGGTGGGAGCCGCCATCTTCATGCAAAACG,Promoter (<=1kb),16,28826176,28929673,103498,2,Mb21d2-201,2,Mb21d2-201,Mb21d2,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,4,239796,ENSMUSG00000051065,conserved gene and region,16,28929642,28929973,332,*,332,54,0.822289157,0.9703399,0.162650602,2.06E-54,CpGisland,TRUE,U1,Pr-A
24680,cg10728143,-0.0000029,0.00000194,-1.498935258,0.134908057,loss,ns,-0.00000284,0.00000329,-0.862429229,0.389118031,neg,ns,0.001192222,0.000963627,1.237222641,0.216940798,pos,ns,0.663658767,-0.000075,0.0000331,-2.26428437,0.024247176,neg,ns,0.960087906,Lrp1,Lrp1_Exon,10,127595127,127595176,127595127,127595128,50,-,CGTTCCACCTTTGGGATCTGCCCATAGTCAGTGAAAAACACCTTCCTGTG,"Exon (Lrp1-201/Lrp1, exon 8 of 89)",10,127538161,127621148,82988,2,Lrp1-201,25972,Lrp1-201;Lrp1-204;Lrp1-203;Lrp1-202,Lrp1;Lrp1;Lrp1;Lrp1,0;0;0;25746,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,8,16971,ENSMUSG00000040249,conserved gene and region,10,127594974,127595150,177,*,177,12,0.593220339,0.77631579,0.06779661,0.000000157,CpGisland,TRUE,U5,En-Sd
1898,cg14642039,-0.0000157,0.00000735,-2.130505779,0.033916828,loss,ns,0.0000108,0.0000125,0.862369889,0.389150623,pos,ns,0.002992554,0.003656257,0.818474677,0.4137149,pos,ns,0.383298837,-0.000188153,0.000125738,-1.496382911,0.135571281,neg,ns,0.57389192,Gm9535,Gm9535_Intergenic_upstream,10,16053083,16053132,16053131,16053132,50,-,TCTTTCAACTAGTTGGAGACACACCTCTTGTTTGTATGTCCTAAACATCG,Distal Intergenic,10,15783209,15783976,768,2,Gm9535-201,-269156,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,671439,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9331,cg16617027,-0.00000238,0.00000165,-1.441757877,0.150380128,loss,ns,0.00000242,0.00000281,0.862238287,0.38922291,pos,ns,0.000444775,0.000822995,0.540434787,0.589285284,pos,ns,0.229674404,-0.0000403,0.0000283,-1.424258343,0.155377531,neg,ns,0.952959055,Slit2,Slit2_Exon,5,48220023,48220072,48220023,48220024,50,-,CGCCGCCTGGCAAACAAAAGAATTGGACAGATCAAAAGCAAGAAATTCCG,"Exon (Slit2-208/Slit2, exon 14 of 36)",5,47983138,48307733,324596,1,Slit2-208,236885,Slit2-208;Slit2-201;Slit2-202;Slit2-216;Slit2-217;Slit2-209;Slit2-218;Slit2-206,Slit2;Slit2;Slit2;Slit2;Slit2;Slit2;Slit2;Slit2,0;0;0;0;0;37921;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,11,20563,ENSMUSG00000031558,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17021,cg06517051,-0.00000917,0.0000108,-0.845391843,0.398544116,loss,ns,0.0000159,0.0000184,0.8621982,0.389244931,pos,ns,-0.004543059,0.005398934,-0.841473235,0.40073151,neg,ns,0.397146507,-0.000117652,0.000185669,-0.633665125,0.526766631,neg,ns,0.717893333,Grik1,Grik1_Exon,16,87923122,87923171,87923122,87923123,50,+,CGATCTGAGTGAGGTTGCAGTTTCTCTGCGTCACATACTCAATGCTGGTG,"Exon (Grik1-211/Grik1, exon 15 of 17)",16,87895900,88289864,393965,2,Grik1-211,366693,Grik1-211;Grik1-201;Grik1-202;Grik1-209;Grik1-210;Grik1-206;Grik1-203;Grik1-204,Grik1;Grik1;Grik1;Grik1;Grik1;Grik1;Grik1;Grik1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,14805,ENSMUSG00000022935,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4095,cg25121905,-0.0000417,0.0000091,-4.582330207,0.00000667,loss,ns,0.0000133,0.0000155,0.862038817,0.389332492,pos,ns,0.002949915,0.004528692,0.651383365,0.515281625,pos,ns,0.287955344,-0.0000384,0.000155741,-0.246857792,0.805181677,neg,ns,0.584356849,Gm45647,Gm45647_Promoter,8,26770580,26770629,26770628,26770629,50,+,GATTTATTAGGTGCAGAAAGCTCGCTGATAAATTTTACTGCAAGTCCCCG,Promoter (9-10kb),8,26780315,26780509,195,1,Gm45647-201,-9686,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,62,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18727,cg02120103,-0.00000426,0.00000402,-1.058552474,0.290627764,loss,ns,0.00000589,0.00000683,0.862012794,0.38934679,pos,ns,-0.003548465,0.002001287,-1.77309127,0.077195437,neg,ns,1.11240837,0.000148938,0.0000688,2.16403306,0.031225219,pos,ns,0.927889867,Gm12695,Gm12695_Intergenic_upstream,4,96969312,96969361,96969360,96969361,50,+,AGCTCTGACAGTTTGTCTTTCTGCAAACTGCCGACAGATTGCAAGTTACG,Distal Intergenic,4,96723647,96785186,61540,2,Gm12695-201,-184126,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,4,620779,ENSMUSG00000078639,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2681,cg27664768,-0.00000771,0.0000037,-2.081701203,0.038189927,loss,ns,-0.00000542,0.00000629,-0.862001971,0.389352736,neg,ns,-0.001115802,0.001842873,-0.605468734,0.545310593,neg,ns,0.263356065,-0.000155773,0.0000634,-2.457910117,0.014521754,neg,ns,0.882875374,Gm50052,Gm50052_Intergenic_upstream,18,21362813,21362862,21362813,21362814,50,+,CGAAAAATGAGGAAAGGCCAACTACATTTCGCCTGAAGAGAGTCATGTCA,Distal Intergenic,18,21332106,21332679,574,2,Gm50052-201,-30134,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
472,cg12549501,-0.00002,0.0000113,-1.77842615,0.076313896,loss,ns,-0.0000165,0.0000191,-0.861991437,0.389358524,neg,ns,-0.004795846,0.005608296,-0.855134299,0.393137211,neg,ns,0.405455847,-0.00026527,0.000192869,-1.375393046,0.170002678,neg,ns,0.699547706,Gm42718,Gm42718_Intergenic_downstream,5,6306451,6306500,6306451,6306452,50,+,CGACTGCAGTAACTATAGGTTGTAATTGTCATCGTTGTCATATAAAATGT,Distal Intergenic,5,6311311,6313991,2681,2,Gm42718-201,7491,Gm42718-201,Gm42718,7491,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12395,cg06302757,0.0000878,0.0000161,5.4649392,9.53E-08,gain,yes,-0.0000235,0.0000273,-0.861991343,0.389358576,neg,ns,0.03170571,0.007994922,3.965730853,0.0000909,pos,ns,4.041337648,-0.0007066,0.000274945,-2.569969466,0.01063773,neg,ns,0.29508111,Fign,Fign_Intron,2,64095549,64095598,64095597,64095598,50,-,TCTCAGGGCAAATTATGTGCATCTAAAATAAACAGTCTTCTTATTGATCG,"Intron (Fign-203/Fign, intron 2 of 2)",2,63971507,64098012,126506,2,Fign-203,2414,Fign-203;Fign-201;Fign-202;Fign-204,Fign;Fign;Fign;Fign,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,84,60344,ENSMUSG00000075324,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1336,cg07360866,-0.00000489,0.00000284,-1.723414318,0.085810724,loss,ns,0.00000416,0.00000483,0.861754401,0.389488773,pos,ns,0.003983339,0.001413582,2.817903857,0.00514436,pos,ns,2.288668682,-0.000156405,0.0000486,-3.217342877,0.00143065,neg,ns,0.943613832,Cadps,Cadps_Intron,14,12377601,12377650,12377601,12377602,50,-,CGCTCTGCCGCTTATACCAAACAATTTACAAATAAAATGAAAAGGTGTGG,"Intron (Gm48239-201/Gm48239-201, intron 1 of 3)",14,12372563,12823053,450491,2,Cadps-210,445403,Cadps-210;Cadps-202;Cadps-203;Cadps-204;Cadps-201;Cadps-212;Cadps-205;Cadps-207;Cadps-208,Cadps;Cadps;Cadps;Cadps;Cadps;Cadps;Cadps;Cadps;Cadps,0;0;0;0;0;0;-658;-322;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,34,27062,ENSMUSG00000054423,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25013,cg18030834,0.0000649,0.00000494,13.11982293,1.41E-31,gain,yes,-0.00000724,0.0000084,-0.861729597,0.389502404,neg,ns,0.003952102,0.002460904,1.605955683,0.109301773,pos,ns,0.961372795,0.000113524,0.0000846,1.341414476,0.180767788,pos,ns,0.167634506,Fgfr2,Fgfr2_Intron,7,131542583,131542632,131542631,131542632,50,-,ACTCCCCGCATTTAACTTGGATGACATTTTGATTTCATCATTAGCATCCG,"Intron (Fgfr2-217/Fgfr2, intron 2 of 6)",7,130162451,133123350,2960900,2,Fgfr2-217,1580718,Fgfr2-217;Hmx3-201,Fgfr2;Hmx3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,58,79,14183,ENSMUSG00000030849,mapped to different genes,7,131542631,131543412,782,*,782,92,0.739130435,0.916717635,0.117647059,5.66E-77,CpGisland,TRUE,U3,Pr-B
5603,cg09430010,-0.00000478,0.00000159,-3.008888263,0.002837096,loss,ns,0.00000233,0.0000027,0.861723975,0.389505494,pos,ns,-0.000372144,0.000791473,-0.470191756,0.638548636,neg,ns,0.194806019,-0.00000366,0.0000272,-0.134475744,0.893113656,neg,ns,0.9637238,Dst,Dst_Exon,1,34303439,34303488,34303439,34303440,50,+,CGCAATTATGGTAAACCATGGTTGACAAACAGCAAAATGTCAACTCCTTG,"Exon (Dst-211/Dst, exon 101 of 103)",1,33908225,34307592,399368,1,Dst-211,395214,Dst-211;Dst-202;Dst-203;Dst-201;Dst-215;Dst-204;Dst-212;Dst-208,Dst;Dst;Dst;Dst;Dst;Dst;Dst;Dst,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,4,13518,ENSMUSG00000026131,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18566,cg10906729,0.00000156,0.00000199,0.785397059,0.43282065,gain,ns,-0.00000291,0.00000338,-0.861608527,0.389568943,neg,ns,-0.001259967,0.000989887,-1.272839493,0.204028757,neg,ns,0.690308617,0.0000403,0.000034,1.183240109,0.237620605,pos,ns,0.036556906,Hoxb6,Hoxb6_Promoter,11,96292391,96292440,96292439,96292440,50,+,GTGGTTGAATCCAGCGATTGGCCGGCGCCGGTCATGTGGCCGGGCGATCG,Promoter (<=1kb),11,96292476,96301569,9094,1,Hoxb6-202,-36,Hoxb6-202;Hoxb7-201;Hoxb7-202,Hoxb6;Hoxb7;Hoxb7,0;0;3676,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,5,16,15414,ENSMUSG00000000690,mapped to different genes,11,96292405,96292440,36,*,36,7,0.75,1.431818182,0.194444444,0.000000102,CpGisland,TRUE,U13,Hc-P
11972,cg12950485,-0.0000452,0.00000893,-5.060338531,0.000000719,loss,yes,0.0000131,0.0000152,0.861511868,0.38962207,pos,ns,-0.000955559,0.004442765,-0.215082098,0.829844739,neg,ns,0.081003155,0.000000904,0.000152786,0.005913833,0.995285275,pos,ns,0.821155621,Tbr1,Tbr1_Intergenic_downstream,2,61818407,61818456,61818455,61818456,50,+,AGCAAAGCACATGTTCCCTTGTTCATGCCAAGTGTGATAAAAACTAGTCG,Distal Intergenic,2,61806273,61811801,5529,1,Tbr1-203,12134,Tbr1-201,Tbr1,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,27,21375,ENSMUSG00000035033,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
22126,cg26186843,0.000021,0.0000174,1.207150597,0.228294423,gain,ns,0.0000255,0.0000296,0.861360336,0.389705367,pos,ns,0.016733649,0.008670352,1.929984976,0.054520841,pos,ns,1.26343745,-0.000639531,0.000298173,-2.144833707,0.032743098,neg,ns,0.472367,Eif4g2,Eif4g2_fiveUTR,7,111081553,111081602,111081553,111081554,50,-,CGGCTTGACAACGAAGAATCTTCAAAAGAATAATATTAATAGATGGGGTG,5' UTR,7,111067750,111083030,15281,2,Eif4g2-213,1428,Eif4g2-213;Eif4g2-206;Eif4g2-210;Eif4g2-209;Eif4g2-203;Eif4g2-201;Eif4g2-212;Eif4g2-205,Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,22,13690,ENSMUSG00000005610,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16918,cg05249880,-0.0000156,0.00000563,-2.774648622,0.00586148,loss,ns,0.00000823,0.00000956,0.861335122,0.389719228,pos,ns,-0.006078037,0.002799821,-2.170866674,0.030699799,neg,ns,1.51286447,-0.000026,0.0000963,-0.270028116,0.787318293,neg,ns,0.81385641,Ascl1,Ascl1_Intergenic_downstream,10,87389180,87389229,87389180,87389181,50,-,CGGGGTAGTTTTTGACAGGTGCGGCTGCCTGCCTATAGCTGGCATATAAT,Distal Intergenic,10,87490819,87493660,2842,2,Ascl1-201,104480,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,11,11,17172,ENSMUSG00000020052,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6811,cg17760940,-0.0000319,0.00000903,-3.528885808,0.000480515,loss,ns,-0.0000132,0.0000153,-0.861308936,0.389733624,neg,ns,-0.008406332,0.004494891,-1.87019726,0.062398692,neg,ns,1.204824516,0.0000916,0.000154579,0.59270106,0.553813332,pos,ns,0.847292813,Tmem39a,Tmem39a_Exon,16,38585405,38585454,38585405,38585406,50,+,CGCAATGAAGTAGAATGTCTGAAAGCAGATTTCAACCACAGAATCAAGGA,Promoter (<=1kb),16,38585416,38586890,1475,1,Tmem39a-203,0,Tmem39a-204;Tmem39a-201;Tmem39a-214;Tmem39a-205;Tmem39a-202;Tmem39a-210;Tmem39a-209;Tmem39a-211;Tmem39a-203;Tmem39a-213;Tmem39a-207;Tmem39a-212;Tmem39a-206,Tmem39a;Tmem39a;Tmem39a;Tmem39a;Tmem39a;Tmem39a;Tmem39a;Tmem39a;Tmem39a;Tmem39a;Tmem39a;Tmem39a;Tmem39a,0;0;0;0;21216;0;0;0;0;0;0;-1757;-2585,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,67846,ENSMUSG00000002845,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21127,cg12232760,0.0000272,0.00000612,4.452216249,0.0000119,gain,ns,-0.00000895,0.0000104,-0.861212406,0.389786695,neg,ns,0.005085321,0.003044563,1.670296133,0.095870093,pos,ns,1.018316849,-0.000179399,0.000104702,-1.713424014,0.087634284,neg,ns,0.08509227,Gm3191,Gm3191_Intergenic_downstream,12,106479887,106479936,106479935,106479936,50,+,ATGTGGCTGAAATTGATAATTCCAAAGTGCTTCATTTCGGCTCCTCGGCG,Distal Intergenic,12,106459150,106459495,346,1,Gm3191-201,20737,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,11,13,100041191,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
22186,cg09620142,0.0000147,0.00000349,4.206253618,0.000034,gain,ns,0.0000051,0.00000592,0.861197686,0.389794788,pos,ns,0.003237599,0.001734722,1.866350154,0.062936451,pos,ns,1.201097753,0.0000126,0.0000597,0.211028101,0.833003996,pos,ns,0.065352664,Slitrk5,Slitrk5_Exon,14,111681683,111681732,111681683,111681684,50,+,CGGTGCTCTACAGCCCCCCGAGTGCTGTCTTTGTAGAACCCAACCGGAAC,"Exon (Slitrk5-201/Slitrk5, exon 2 of 2)",14,111675097,111683141,8045,1,Slitrk5-201,6586,Slitrk5-201;Slitrk5-202,Slitrk5;Slitrk5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,10,75409,ENSMUSG00000033214,conserved gene and region,14,111681593,111681781,189,*,189,12,0.571428571,0.780185759,0.063492064,0.00000032,CpGisland,TRUE,U3,Pr-B
11867,cg23267740,0.0000817,0.0000122,6.717255697,8.86E-11,gain,yes,-0.0000178,0.0000207,-0.861003394,0.38990162,neg,ns,0.011741603,0.006054819,1.939216226,0.053382158,pos,ns,1.272603872,-0.000551089,0.000208225,-2.646607616,0.008545521,neg,ns,0.079731433,Tle3,Tle3_Promoter,9,61368752,61368801,61368752,61368753,50,+,CGAGGTACTCAATTAAGCAGCCAATGAAAAGTCAGCTCTCCGGTAGCAAA,Promoter (3-4kb),9,61372366,61418497,46132,1,Tle3-218,-3565,Tle3-218;Tle3-204;Tle3-201;Tle3-215;Tle3-212;Tle3-208;Tle3-207;Tle3-217;Tle3-202;Tle3-206;Tle3-210;Tle3-205;Tle3-211,Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3,0;0;0;0;0;0;0;0;0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,11,30,21887,ENSMUSG00000032280,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15928,cg13133981,-0.0000162,0.0000106,-1.533077151,0.126276728,loss,ns,0.0000155,0.000018,0.860937734,0.389937728,pos,ns,0.00329227,0.00526797,0.624959892,0.532457116,pos,ns,0.273715364,-0.000282303,0.000181165,-1.558265505,0.120190603,neg,ns,0.713253835,Gm5452,Gm5452_Intergenic_downstream,13,83885166,83885215,83885214,83885215,50,+,TGATGTAAATTTATTTAAATAGATTCGACCGCTTAAAAGTTTGCCAGCCG,Distal Intergenic,13,83832340,83833336,997,1,Gm5452-201,52826,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,16,432789,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12300,cg22531336,0.0000303,0.00000995,3.045769839,0.002520124,gain,ns,-0.0000145,0.0000169,-0.86068069,0.390079101,neg,ns,-0.008584542,0.00495107,-1.733876181,0.083934241,neg,ns,1.076060833,0.000315665,0.000170267,1.85394029,0.064697436,pos,ns,0.812391267,Fign,Fign_Intergenic_downstream,2,63878350,63878399,63878350,63878351,50,+,CGGCATAATGGGCCCCTCTCAATCCTTACATGGAAGGGTTAGATTGTCAT,Distal Intergenic,2,63980447,64097988,117542,2,Fign-202,219589,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,28,84,60344,ENSMUSG00000075324,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23272,cg21387570,0.0000219,0.00000314,6.995986611,1.63E-11,gain,yes,-0.00000459,0.00000533,-0.860592416,0.390127659,neg,ns,0.001664205,0.001561224,1.065961642,0.287270477,pos,ns,0.541709004,0.0000167,0.0000537,0.311267938,0.755806151,pos,ns,0.955661952,Eri3,Eri3_Intron,4,117645083,117645132,117645131,117645132,50,+,ATGGGACTGACAGTGCATGGAGGAGGCTGATTATACACGATTCCATTTCG,"Intron (Eri3-201/Eri3, intron 7 of 8)",4,117550365,117674297,123933,1,Eri3-201,94718,Eri3-201;Eri3-206;Eri3-203,Eri3;Eri3;Eri3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,82,97,140546,ENSMUSG00000033423,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8407,cg21484638,-0.0000218,0.0000101,-2.15282236,0.032103979,loss,ns,0.0000148,0.0000172,0.860403295,0.390231702,pos,ns,-0.002395325,0.00503038,-0.47617187,0.634287356,neg,ns,0.197713946,-0.000233339,0.000172994,-1.348823013,0.178378287,neg,ns,0.659395295,Zeb2,Zeb2_Intron,2,45097517,45097566,45097565,45097566,50,+,CATAAAGTGCAATAATCGTCCTGCTGTCAGGATCACCACTTTAAAATACG,"Intron (Zeb2-212/Zeb2, intron 3 of 10)",2,44983632,45117395,133764,2,Zeb2-212,19829,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219;Zeb2-211,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2895,cg03098767,0.0000234,0.00000837,2.795190748,0.005510327,gain,ns,-0.0000122,0.0000142,-0.86027103,0.390304477,neg,ns,-0.011170748,0.004167517,-2.680432471,0.007745906,neg,ns,2.110927765,0.000262868,0.000143321,1.83412521,0.067593807,pos,ns,0.856932366,Ehbp1,Ehbp1_Intron,11,22034674,22034723,22034674,22034675,50,-,CGAAATTCTCATTTAGTTGTCTTTATTTTGCTAGCGCCATGTGGTCCTTG,"Intron (Ehbp1-201/Ehbp1, intron 20 of 23)",11,22005828,22285838,280011,2,Ehbp1-201,251115,Ehbp1-201;Ehbp1-202;Ehbp1-207,Ehbp1;Ehbp1;Ehbp1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,34,45,216565,ENSMUSG00000042302,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3663,cg11694787,0.00000612,0.0000107,0.56993727,0.569133043,gain,ns,0.0000157,0.0000182,0.860221358,0.39033181,pos,ns,0.008217173,0.005344586,1.53747605,0.125196803,pos,ns,0.90240676,-0.000209339,0.0001838,-1.138949704,0.255603487,neg,ns,0.361849169,Erfl,Erfl_Promoter,7,24951334,24951383,24951382,24951383,50,+,GCCTGATTGAATGTTTTGCTTTCGCCCAAATTGAAACATTAAACAACACG,Promoter (6-7kb),7,24927445,24944494,17050,2,Erfl-201,-6840,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,29,36,,NA,mapped to different genes,7,24951274,24951467,194,*,194,18,0.567010309,1.164,0.092783505,1.92E-13,CpGisland,TRUE,U13,Hc-P
14100,cg08882290,-0.00000607,0.00000167,-3.629980576,0.00033146,loss,ns,-0.00000244,0.00000284,-0.860162754,0.390364058,neg,ns,0.000069,0.000832385,0.082849827,0.934024419,pos,ns,0.029641769,0.00000798,0.0000286,0.278780555,0.780599114,pos,ns,0.954170707,Pafah1b1,Pafah1b1_Exon,11,74679457,74679506,74679505,74679506,50,+,CCCAAGGAGGTAACAAAGTGTTCATGCGCATTGAGGGTCTTCATGCATCG,"Exon (Pafah1b1-203/Pafah1b1, exon 9 of 9)",11,74673949,74724335,50387,2,Pafah1b1-203,44829,Pafah1b1-203;Pafah1b1-201;Pafah1b1-202;Pafah1b1-205,Pafah1b1;Pafah1b1;Pafah1b1;Pafah1b1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,5,18472,ENSMUSG00000020745,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6586,cg19356917,-0.00000153,0.0000022,-0.692944649,0.488863085,loss,ns,0.00000322,0.00000374,0.860159062,0.39036609,pos,ns,0.002609089,0.001097136,2.378090801,0.018008402,pos,ns,1.744524819,-0.0000942,0.0000377,-2.496940815,0.013045614,neg,ns,0.048624308,Gm37013,Gm37013_Exon,18,37806282,37806331,37806282,37806283,50,-,CGCTAGCTCATTCTTCGTGCAGTTATTGGCTGGGACTCTGTGTGCCGCTG,"Exon (BC037039-201/BC037039-201, exon 1 of 1)",18,36969916,37833296,863381,1,Gm37013-201,836366,Gm37013-201;Gm37388-201;Gm42416-201;Pcdhga1-201;Pcdhga10-201;Pcdhga11-201;Pcdhga12-201;Pcdhga2-201;Pcdhga3-201;Pcdhga4-201;Pcdhga5-201;Pcdhga6-201;Pcdhga7-201;Pcdhga8-201;Pcdhga9-201;Pcdhgb1-201;Pcdhgb2-202;Pcdhgb4-202;Pcdhgb5-201;Pcdhgb6-201;Pcdhgb7-201;Pcdhgb8-201;Pcdhgc3-203;Pcdhgc3-201;Pcdhgc3-202,Gm37013;Gm37388;Gm42416;Pcdhga1;Pcdhga10;Pcdhga11;Pcdhga12;Pcdhga2;Pcdhga3;Pcdhga4;Pcdhga5;Pcdhga6;Pcdhga7;Pcdhga8;Pcdhga9;Pcdhgb1;Pcdhgb2;Pcdhgb4;Pcdhgb5;Pcdhgb6;Pcdhgb7;Pcdhgb8;Pcdhgc3;Pcdhgc3;Pcdhgc3,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,14,100384868,ENSMUSG00000103458,mapped to different genes,18,37806251,37806629,379,*,379,32,0.63060686,0.850014017,0.084432718,3.32E-22,CpGisland,TRUE,U3,Pr-B
7820,cg27065387,-0.000006,0.00000256,-2.346591446,0.019575341,loss,ns,-0.00000374,0.00000435,-0.86002767,0.3904384,neg,ns,-0.000908754,0.001272947,-0.713897707,0.47582758,neg,ns,0.322550389,-0.00000115,0.0000438,-0.026165399,0.979142249,neg,ns,0.941089862,Gtdc1,Gtdc1_Intergenic_downstream,2,44437425,44437474,44437425,44437426,50,-,CGACAGGAGGATGACATAAACCAGCTTTGTGGTTACATGTTTCACTTTTA,Distal Intergenic,2,44565133,44571347,6215,2,Gtdc1-207,133922,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,43,227835,ENSMUSG00000036890,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21870,cg21366602,0.00000369,0.00000257,1.432350472,0.153051107,gain,ns,-0.00000376,0.00000437,-0.859975073,0.390467348,neg,ns,0.001187976,0.00128077,0.927547865,0.354363749,pos,ns,0.450550713,0.0000209,0.000044,0.475008512,0.635115388,pos,ns,0.951471152,Eps15,Eps15_Exon,4,109343200,109343249,109343200,109343201,50,-,CGATTCAGGATTAGGAGGATGGATAACCATACCAGCTGTAGCTGATGTTC,"Exon (Eps15-201/Eps15, exon 1 of 13)",4,109280268,109387817,107550,1,Eps15-202,62932,Eps15-202;Eps15-208;Eps15-204;Eps15-207;Eps15-201;Eps15-203,Eps15;Eps15;Eps15;Eps15;Eps15;Eps15,0;0;0;0;0;-4,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,13858,ENSMUSG00000028552,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4722,cg23671588,0.0000894,0.0000134,6.685472932,1.07E-10,gain,yes,-0.0000195,0.0000227,-0.859910888,0.390502676,neg,ns,0.002251177,0.006658398,0.338095861,0.735519799,pos,ns,0.133405632,0.000240436,0.000228982,1.050023189,0.294525326,pos,ns,0.684889101,Mecom,Mecom_Intron,3,30286686,30286735,30286686,30286687,50,+,CGATTACTTGGAGAGCAGAAAGACCCTCAGTCATTAGTGAGTGAATTAAA,"Intron (Mecom-212/Mecom, intron 1 of 15)",3,29951299,30509733,558435,2,Mecom-212,222998,Mecom-212;Mecom-213;Mecom-207;Mecom-208;Mecom-211;Mecom-209,Mecom;Mecom;Mecom;Mecom;Mecom;Mecom,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,80,14013,ENSMUSG00000027684,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
463,cg04197976,-0.0000206,0.00000732,-2.814276605,0.005201282,loss,ns,0.0000107,0.0000124,0.859840025,0.390541681,pos,ns,0.00292722,0.003644776,0.80312741,0.422516434,pos,ns,0.374156395,-0.000264451,0.000125344,-2.109806325,0.035676243,neg,ns,0.883381131,Gm17934,Gm17934_Intergenic_downstream,3,6104755,6104804,6104803,6104804,50,+,TTTTCAATACAACCAGATCATTGCAGATAATTGTATTACACAGTGTATCG,Distal Intergenic,3,6137823,6138244,422,2,Gm17934-201,33440,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,6,100416136,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2994,cg02791630,-0.00001,0.00000506,-1.978547142,0.048751907,loss,ns,-0.00000738,0.00000859,-0.859831627,0.390546304,neg,ns,-0.006924024,0.002516194,-2.751784922,0.006276055,neg,ns,2.202313247,0.000160629,0.0000865,1.856302945,0.064359057,pos,ns,0.872034324,Gm11882,Gm11882_Promoter,4,22269121,22269170,22269169,22269170,50,+,CAAGAACAAACTAATTAATGGATTCCATTTTTGACAGCTACAAGAAGACG,Promoter (6-7kb),4,22275833,22276338,506,1,Gm11882-201,-6663,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,4,100504111,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7573,cg11853743,-0.00000131,0.00000251,-0.520346842,0.603193268,loss,ns,-0.00000367,0.00000427,-0.859824122,0.390550435,neg,ns,0.001402259,0.001249659,1.122113557,0.262682535,pos,ns,0.580568801,-0.0000933,0.000043,-2.171710797,0.030635429,neg,ns,0.944051046,Cpeb2,Cpeb2_Exon,5,43285827,43285876,43285875,43285876,50,+,CAGTATTACTGTGAGTTTTGTTGGGCAAATATCCACTCTCGTGCTGGACG,"Exon (Cpeb2-204/Cpeb2, exon 12 of 12)",5,43233170,43289723,56554,1,Cpeb2-204,52657,Cpeb2-204;Cpeb2-201;Cpeb2-205;Cpeb2-202,Cpeb2;Cpeb2;Cpeb2;Cpeb2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,11,231207,ENSMUSG00000039782,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17126,cg22015001,-0.00000184,0.0000057,-0.322815547,0.747052561,loss,ns,0.00000832,0.00000968,0.859768032,0.390581311,pos,ns,-0.000815535,0.002835002,-0.287666421,0.773794308,neg,ns,0.111374469,-0.000208366,0.0000975,-2.137182551,0.03336545,neg,ns,0.580719298,Ppp1r21,Ppp1r21_Exon,17,88558625,88558674,88558625,88558626,50,+,CGCCCTCTTGAGGAAGGAATGCTTCATTTATTTGAAAGTATCACTGAGGA,"Exon (Ppp1r21-201/Ppp1r21, exon 10 of 22)",17,88530118,88588367,58250,1,Ppp1r21-201,28507,Ppp1r21-201;Ppp1r21-206,Ppp1r21;Ppp1r21,0;-3443,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,73825,ENSMUSG00000034709,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13405,cg15651233,0.000101224,0.00000781,12.96582897,5.18E-31,gain,yes,-0.0000114,0.0000133,-0.859604818,0.390671165,neg,ns,0.011414147,0.003885607,2.937545537,0.00355621,pos,ns,2.449012629,-0.000257208,0.000133626,-1.924838326,0.055164478,neg,ns,0.12541119,Nr2f2,Nr2f2_Exon,7,70366079,70366128,70366127,70366128,50,+,GTAAGTAAACATACCAAAACCATATTTGCCTTGTTCAAGGTCCCAAACCG,Promoter (<=1kb),7,70354439,70366735,12297,2,Nr2f2-202,607,Nr2f2-202,Nr2f2,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,24,69,11819,ENSMUSG00000030551,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24579,cg17773015,-0.0000804,0.0000298,-2.696188679,0.007396966,loss,ns,-0.0000435,0.0000506,-0.859587337,0.39068079,neg,ns,-0.024374696,0.014833829,-1.64318301,0.10135891,neg,ns,0.994138067,-0.000338388,0.000510134,-0.663332022,0.507610893,neg,ns,0.247584253,Maz,Maz_fiveUTR,7,127026941,127026990,127026989,127026990,50,-,GAGTTGTTACCTGGAAGATGAAGCTGCTCCAGTTGCTGGGATCCATGGCG,Promoter (<=1kb),7,127022135,127027024,4890,2,Maz-204,34,Kif22-202;Kif22-201;Kif22-205;Kif22-206;Maz-203;Maz-201;Maz-204;Maz-202;Maz-206;Maz-205,Kif22;Kif22;Kif22;Kif22;Maz;Maz;Maz;Maz;Maz;Maz,1967;15481;1126;5714;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,17,17188,ENSMUSG00000030678,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
5012,cg14550429,0.000023,0.00000237,9.702624785,1.31E-19,gain,yes,-0.00000346,0.00000402,-0.85956373,0.390693787,neg,ns,-0.001007003,0.001177785,-0.854997495,0.393212825,neg,ns,0.405372326,0.0000246,0.0000405,0.607104213,0.544226154,pos,ns,0.068201186,Foxc1,Foxc1_Exon,13,31807217,31807266,31807217,31807218,50,-,CGCTACTCCGTGTCCAGCCCCAACTCCCTGGGAGTGGTGCCCTACCTCGG,Promoter (<=1kb),13,31806633,31812476,5844,1,Foxc1-201,584,Foxc1-201,Foxc1,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,7,17300,ENSMUSG00000050295,conserved gene and region,13,31806890,31807492,603,*,603,82,0.742951907,0.985942454,0.135986733,1.21E-74,CpGisland,TRUE,U3,Pr-B
2083,cg23934621,0.00000516,0.00000935,0.552273755,0.581158757,gain,ns,-0.0000136,0.0000159,-0.859547482,0.390702734,neg,ns,-0.005666209,0.004651848,-1.218055499,0.224129133,neg,ns,0.649501689,0.000286379,0.000159977,1.790128742,0.07440903,pos,ns,0.144073679,A930004D18Rik,A930004D18Rik_Intron,2,18029137,18029186,18029137,18029138,50,-,CGTCGCTTGCAGAAAATTAATCAAACTTGAATCCTTGTTGCATAGCAAGA,"Intron (A930004D18Rik-201/A930004D18Rik, intron 1 of 1)",2,18025193,18037737,12545,2,A930004D18Rik-201,8551,A930004D18Rik-201;A930004D18Rik-202;A930004D18Rik-203,A930004D18Rik;A930004D18Rik;A930004D18Rik,0;-377;-266,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,10,77940,ENSMUSG00000054057,mapped to different genes,2,18028841,18029141,301,*,301,25,0.631229236,0.845125786,0.083056478,2.77E-17,CpGisland,TRUE,NA,NRS
9070,cg25957641,0.000196786,0.0000202,9.760033992,8.48E-20,gain,yes,0.0000294,0.0000343,0.859536347,0.390708864,pos,ns,0.012098027,0.010035068,1.20557498,0.228900805,pos,ns,0.64035268,0.000106621,0.000345105,0.308952246,0.757565386,pos,ns,0.334273995,Cnnm2,Cnnm2_Exon,19,46763068,46763117,46763116,46763117,50,-,GAACATCATCCAAGGGGCGCTGGAGCTCCGCACCAAGACGGTGGAGGACG,"Exon (Cnnm2-202/Cnnm2, exon 1 of 8)",19,46761596,46880192,118597,1,Cnnm2-202,1472,Cnnm2-202;Cnnm2-201;Cnnm2-203,Cnnm2;Cnnm2;Cnnm2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,8,94219,ENSMUSG00000064105,conserved gene and region,19,46762936,46763287,352,*,352,22,0.553977273,0.815673057,0.0625,1.17E-12,CpGisland,TRUE,NA,NRS
27345,cg08178841,0.0000174,0.00000541,3.222378365,0.001406548,gain,ns,-0.0000079,0.00000919,-0.859357466,0.390807364,neg,ns,-0.001502649,0.002692835,-0.558017615,0.57723512,neg,ns,0.238647254,0.0000708,0.0000926,0.764672124,0.445048499,pos,ns,0.682705208,Cdh22,Cdh22_Intron,2,165158085,165158134,165158085,165158086,50,+,CGTAGACTGCTGGGGAGAGTATAAATTGGATAAAAGTCCATCAAACAGTG,"Intron (Cdh22-201/Cdh22, intron 3 of 11)",2,165111507,165234853,123347,2,Cdh22-201,76719,Cdh22-201;Cdh22-202,Cdh22;Cdh22,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,23,104010,ENSMUSG00000053166,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5362,cg09919752,0.0000243,0.00000423,5.748720621,2.15E-08,gain,yes,-0.00000617,0.00000718,-0.859336504,0.390818907,neg,ns,0.004987917,0.002103094,2.371704349,0.018316867,pos,ns,1.737148816,-0.000114217,0.0000723,-1.57921149,0.115307356,neg,ns,0.121625058,Lmx1b,Lmx1b_Intron,2,33616778,33616827,33616778,33616779,50,-,CGCCCCGAGGTCTTTCTGAGCAGACTGCTAAGCACTGGCTGTCTCCCCCG,"Intron (Lmx1b-201/Lmx1b, intron 2 of 7)",2,33560965,33640608,79644,2,Lmx1b-201,23781,Lmx1b-201;Lmx1b-203;Lmx1b-204;Lmx1b-202,Lmx1b;Lmx1b;Lmx1b;Lmx1b,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,26,16917,ENSMUSG00000038765,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5328,cg03925018,0.0000325,0.00000891,3.645764309,0.00031255,gain,ns,-0.000013,0.0000151,-0.8592703,0.390855366,neg,ns,-0.005983819,0.004435782,-1.348988619,0.178325145,neg,ns,0.748787415,0.000254725,0.000152546,1.669825165,0.095963354,pos,ns,0.781848931,Exoc4,Exoc4_Intron,6,33465666,33465715,33465666,33465667,50,-,CGATTTATGACTGAGAATTAATTAGAGAAGCATTTTCATGCACAACATCC,"Intron (Exoc4-201/Exoc4, intron 9 of 17)",6,33249085,33973979,724895,1,Exoc4-201,216581,Exoc4-201;Exoc4-202;Exoc4-204;Exoc4-203;Exoc4-209,Exoc4;Exoc4;Exoc4;Exoc4;Exoc4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,7,20336,ENSMUSG00000029763,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16856,cg26370521,0.000000333,0.00000403,0.08265698,0.934177638,gain,ns,-0.00000589,0.00000685,-0.859254637,0.390863992,neg,ns,-0.002037264,0.002007108,-1.015024607,0.310885641,neg,ns,0.507399337,0.0000453,0.000069,0.656594947,0.511928502,pos,ns,0.942000145,Dclk2,Dclk2_Exon,3,86799014,86799063,86799014,86799015,50,-,CGGAATGGTGGGAATCCACAGAGAAGTATGTATGTGATCACACCAGCTGC,"Exon (Dclk2-202/Dclk2, exon 12 of 14)",3,86786151,86920379,134229,2,Dclk2-202,121316,Dclk2-202;Dclk2-204;Dclk2-201;Dclk2-209;Dclk2-206;Dclk2-205;Dclk2-207;Dclk2-208,Dclk2;Dclk2;Dclk2;Dclk2;Dclk2;Dclk2;Dclk2;Dclk2,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,70762,ENSMUSG00000028078,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
2191,cg11821165,-0.00000908,0.0000026,-3.495121297,0.000542943,loss,ns,0.00000379,0.00000441,0.859066867,0.390967411,pos,ns,-0.001308764,0.001292429,-1.012639061,0.312022305,neg,ns,0.50581436,0.0000344,0.0000444,0.773000723,0.440110943,pos,ns,0.951656005,Cyp7b1,Cyp7b1_Intergenic_upstream,3,18341525,18341574,18341573,18341574,50,-,CACAACTGACTCTAGCTAACAGCTGGGAATCCTTCGTGACCCATATAGCG,Distal Intergenic,3,18071950,18243338,171389,2,Cyp7b1-201,-98236,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,17,13123,ENSMUSG00000039519,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6140,cg10464769,0.00000166,0.00000313,0.52973814,0.596672676,gain,ns,0.00000457,0.00000532,0.859029944,0.39098775,pos,ns,-0.002501447,0.001559582,-1.603920952,0.109749772,neg,ns,0.959596374,0.0000138,0.0000536,0.256554812,0.797692641,pos,ns,0.963352312,Tenm2,Tenm2_Exon,11,36139684,36139733,36139684,36139685,50,+,CGCCTGTCCAGCCCTCTTCACAGCGGCAGGCTCCCCCGATGCAGACGCCG,"Exon (Tenm2-202/Tenm2, exon 14 of 31)",11,36006656,37235882,1229227,2,Tenm2-202,1096149,Tenm2-202;Tenm2-208;Tenm2-201;Tenm2-204;Tenm2-205,Tenm2;Tenm2;Tenm2;Tenm2;Tenm2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,21,84,23964,ENSMUSG00000049336,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24758,cg20377527,-0.00000795,0.00000904,-0.879551358,0.379783689,loss,ns,0.0000132,0.0000154,0.859025262,0.390990329,pos,ns,0.007653857,0.004498387,1.701466885,0.089858017,pos,ns,1.046443168,-0.000121179,0.000154699,-0.783320838,0.434036758,neg,ns,0.272908393,Gm14006,Gm14006_Intron,2,128377864,128377913,128377864,128377865,50,-,CGAAACTGAATGTGGGTTGTGAAAGAACATTAAAATGAAGAAAATTTCCC,"Intron (Morrbid-211/Morrbid-211, intron 1 of 6)",2,128557254,128558234,981,2,Gm14006-201,180370,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,383791,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13727,cg12925677,-0.00000533,0.00000295,-1.805555427,0.071957811,loss,ns,0.00000431,0.00000501,0.859015248,0.390995844,pos,ns,0.001511162,0.001468582,1.028993694,0.30428482,pos,ns,0.516719713,-0.0000487,0.0000505,-0.964215166,0.335689614,neg,ns,0.94973774,Gm4052,Gm4052_Intergenic_upstream,13,72266014,72266063,72266014,72266015,50,-,CGTGCCAATTATTCATATTATTTGGGTAGTCTTGATATTTATTTAAACTG,Distal Intergenic,13,72350221,72350671,451,1,Gm4052-201,-84207,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,16,16,100042828,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15457,cg12114804,0.0000794,0.0000191,4.156890528,0.0000418,gain,ns,-0.0000279,0.0000324,-0.85891262,0.391052379,neg,ns,0.014471333,0.009504137,1.522635198,0.1288694,pos,ns,0.889850192,-0.000177324,0.000326846,-0.5425302,0.587843116,neg,ns,0.535190038,Srsf5,Srsf5_Exon,12,80948335,80948384,80948383,80948384,50,+,TAACGTGATCTGATCCCTAAGTTGAGACCTGTCTTCCTGTAACGCTTCCG,"Exon (Srsf5-207/Srsf5, exon 5 of 7)",12,80945504,80950507,5004,1,Srsf5-201,2831,Slc10a1-202;Slc10a1-201;Srsf5-201;Srsf5-204;Srsf5-207;Srsf5-202;Srsf5-203;Srsf5-212;Srsf5-211;Srsf5-206;Srsf5-208;Srsf5-210;Srsf5-205;Srsf5-209,Slc10a1;Slc10a1;Srsf5;Srsf5;Srsf5;Srsf5;Srsf5;Srsf5;Srsf5;Srsf5;Srsf5;Srsf5;Srsf5;Srsf5,20321;19695;0;0;0;0;0;0;2801;0;2765;2756;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,10,20384,ENSMUSG00000021134,conserved gene but different region,12,80948271,80948449,179,*,179,13,0.480446927,1.283507998,0.072625698,1.77E-08,CpGisland,TRUE,NA,NRS
13120,cg25993405,-0.00000533,0.000005,-1.066003444,0.287251611,loss,ns,0.00000729,0.00000849,0.858803166,0.391112679,pos,ns,0.00686902,0.002486605,2.762408966,0.006080224,pos,ns,2.216080444,-0.000316047,0.0000855,-3.695846854,0.000259051,neg,ns,0.875376879,Tcf4,Tcf4_Intron,18,69529964,69530013,69529964,69529965,50,-,CGAGACACATCTGCCATTGCAGTATTATAGGCATATGTAGTTTTATTGAA,"Intron (Tcf4-259/Tcf4, intron 6 of 6)",18,69343356,69564082,220727,1,Tcf4-259,186608,Tcf4-259;Tcf4-201;Tcf4-207;Tcf4-210;Tcf4-240;Tcf4-254;Tcf4-246;Tcf4-206;Tcf4-202;Tcf4-257;Tcf4-232;Tcf4-248;Tcf4-231;Tcf4-205;Tcf4-253;Tcf4-233;Tcf4-238;Tcf4-245;Tcf4-249;Tcf4-219;Tcf4-235;Tcf4-227;Tcf4-250;Tcf4-229;Tcf4-260;Tcf4-226;Tcf4-216;Tcf4-256;Tcf4-230;Tcf4-221;Tcf4-234;Tcf4-258;Tcf4-217;Tcf4-247;Tcf4-252;Tcf4-218;Tcf4-208;Tcf4-243;Tcf4-237;Tcf4-239;Tcf4-262,Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,42,66,21413,ENSMUSG00000053477,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2985,cg00684577,-0.0000014,0.00000195,-0.719259265,0.472523036,loss,ns,0.00000285,0.00000332,0.858789132,0.391120412,pos,ns,-0.000299178,0.000971451,-0.307970676,0.758311468,neg,ns,0.120152376,0.0000313,0.0000334,0.937236843,0.349366333,pos,ns,0.936558699,Lrmda,Lrmda_Intron,14,22255879,22255928,22255879,22255880,50,+,CGGGTTTGTGGTTTAACTCTCAGAAATTGGCTGCCAGGTGATTTAGTTAT,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,236167,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206,Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22216,cg06074849,-0.000015,0.000012,-1.252456701,0.211347521,loss,ns,0.0000175,0.0000204,0.85874451,0.391144996,pos,ns,0.003275579,0.005964232,0.549203911,0.583260899,pos,ns,0.234137137,-0.0000313,0.000205109,-0.152452554,0.878929185,neg,ns,0.537056092,Gm26897,Gm26897_Intergenic_downstream,5,111944507,111944556,111944507,111944508,50,-,CGGCACCTGAGCTCACGGTTAGGCATGCAGAAAGGGATCATGGGAATATC,Distal Intergenic,5,111733924,111734574,651,1,Gm26897-201,210632,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,11,23,,NA,mapped to different genes,5,111944377,111944576,200,*,200,16,0.575,1.001251565,0.08,5.65E-11,CpGisland,TRUE,U15,NS
21136,cg19360686,-0.0000134,0.00000459,-2.907884801,0.003901474,loss,ns,-0.0000067,0.00000781,-0.858734317,0.391150613,neg,ns,-0.00293649,0.002286908,-1.284043621,0.200085532,neg,ns,0.698784315,-0.000151612,0.0000786,-1.927764759,0.054797724,neg,ns,0.908050828,Gm17304,Gm17304_Intron,5,106554862,106554911,106554862,106554863,50,-,CGTGCAAAAGAATCTGCAGTTCTAATTGCACAGGTGTTGCCTTATGGCAA,"Intron (Gm28050-202/Gm28050-202, intron 1 of 2)",5,106609098,106609201,104,1,Gm17304-201,-54236,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,35,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4663,cg22897826,0.0000068,0.00000891,0.763371883,0.445822193,gain,ns,0.000013,0.0000151,0.85871793,0.391159642,pos,ns,0.013689405,0.00443325,3.087893837,0.002198101,pos,ns,2.657952362,-0.000178442,0.000152459,-1.170423148,0.242729695,neg,ns,0.143792062,Hes1,Hes1_Intergenic_downstream,16,30068809,30068858,30068857,30068858,50,+,GGCGGGAGAGATCAATCTTTGAAGCTTTCCTAACAAAGATAAAGCCAACG,Distal Intergenic,16,30066338,30067319,982,1,Hes1-204,2471,Hes1-202;Hes1-201;Hes1-203;Hes1-204,Hes1;Hes1;Hes1;Hes1,0;0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,20,15205,ENSMUSG00000022528,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20128,cg14311821,-0.0000221,0.00000535,-4.122398661,0.0000482,loss,ns,0.00000781,0.00000909,0.858709701,0.391164176,pos,ns,-0.0000157,0.002663617,-0.005905284,0.995292091,neg,ns,0.002049447,-0.000128408,0.0000916,-1.401811052,0.161972129,neg,ns,0.887274792,Meioc,Meioc_Exon,11,102675780,102675829,102675828,102675829,50,+,TTTTCTGGTCTCATGCCAACTTTTGGATTTCAAAGACCAATTAAAACCCG,"Exon (Meioc-201/Meioc, exon 5 of 8)",11,102665588,102682237,16650,1,Meioc-201,10192,Meioc-203;Meioc-201;Meioc-202,Meioc;Meioc;Meioc,12064;0;10157,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,268491,ENSMUSG00000051455,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8595,cg03613012,0.0000292,0.00000321,9.096575648,1.16E-17,gain,yes,-0.00000468,0.00000546,-0.858577388,0.391237083,neg,ns,0.004749294,0.001598349,2.971374591,0.003196663,pos,ns,2.495303152,-0.0000942,0.000055,-1.71369016,0.087585299,neg,ns,0.118861307,Dscaml1,Dscaml1_fiveUTR,9,45430415,45430464,45430415,45430416,50,+,CGCACGGCCGGCCACAGGACCACCTCCCCGGAGAATAGGGCCTCTTTATG,5' UTR,9,45426628,45571224,144597,1,Dscaml1-208,3787,Dscaml1-208;Dscaml1-209;Dscaml1-202;Dscaml1-206;Dscaml1-211;Dscaml1-201;Dscaml1-210,Dscaml1;Dscaml1;Dscaml1;Dscaml1;Dscaml1;Dscaml1;Dscaml1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,32,114873,ENSMUSG00000032087,conserved gene and region,9,45430237,45430444,208,*,208,27,0.793269231,0.87394958,0.129807692,3.26E-24,CpGisland,TRUE,U13,Hc-P
12824,cg03638659,0.000023,0.00000862,2.672092275,0.007936548,gain,ns,0.0000126,0.0000146,0.85856043,0.391246428,pos,ns,0.022586636,0.004289771,5.26523113,0.000000262,pos,ns,6.581372948,-0.000390416,0.000147525,-2.646439037,0.008549686,neg,ns,0.611728019,Ebf2,Ebf2_Intron,14,67242238,67242287,67242238,67242239,50,-,CGGGCAGTGGGGCCAGTGTCTTTATCGGCCAGATGGTGTGAATTTAGACA,"Intron (Ebf2-201/Ebf2, intron 6 of 16)",14,67233292,67429777,196486,1,Ebf2-201,8946,Ebf2-201;Ebf2-203;Ebf2-202,Ebf2;Ebf2;Ebf2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,21,13592,ENSMUSG00000022053,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20961,cg11067405,0.000126493,0.0000137,9.258608898,3.54E-18,gain,yes,-0.0000199,0.0000232,-0.858459583,0.391302003,neg,ns,0.018149692,0.006799796,2.669152445,0.008004747,pos,ns,2.0966524,-0.000609888,0.000233844,-2.608093088,0.009545682,neg,ns,0.235736134,Papola,Papola_Intergenic_downstream,12,105875203,105875252,105875203,105875204,50,+,CGTGATGTCTTCATCTGTAACCAGAGCAGACGTGAGCTCCTGGCAGCTTC,Distal Intergenic,12,105829067,105835499,6433,1,Papola-220,46136,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,8,18789,ENSMUSG00000021111,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19803,cg16969806,0.0000116,0.00000311,3.730489736,0.000227228,gain,ns,-0.00000454,0.00000529,-0.858453833,0.391305172,neg,ns,0.001941954,0.001548775,1.253864265,0.210836061,pos,ns,0.676055106,-0.0000809,0.0000533,-1.518294495,0.129959323,neg,ns,0.073672587,Tubg2,Tubg2_Exon,11,101156126,101156175,101156126,101156127,50,-,CGGGAGATCATCACCCTGCAGCTGGGCCAGTGCGGCAACCAGAGTGAGCA,Promoter (<=1kb),11,101155907,101161787,5881,1,Tubg2-201,219,Tubg2-201,Tubg2,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,2,103768,ENSMUSG00000045007,conserved gene and region,11,101155949,101156193,245,*,245,27,0.702040816,0.902209493,0.110204082,4.39E-22,CpGisland,TRUE,U3,Pr-B
6893,cg04295410,-0.00000541,0.00000325,-1.66352284,0.09721837,loss,ns,-0.00000474,0.00000553,-0.858381278,0.391345159,neg,ns,-0.002345764,0.001619056,-1.448847316,0.14839098,neg,ns,0.828592498,0.00000981,0.0000557,0.176258108,0.86020626,pos,ns,0.940545898,Slc35b3,Slc35b3_Intergenic_upstream,13,39336486,39336535,39336534,39336535,50,+,GATATGCAATCATTCATTTCTTATTTTACCAACAGTAATTAAATTGCCCG,Distal Intergenic,13,38932136,38960875,28740,2,Slc35b3-201,-375611,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,9,11,108652,ENSMUSG00000021432,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21923,cg04148340,-0.00000372,0.00000198,-1.874863868,0.061751512,loss,ns,-0.00000289,0.00000337,-0.858344546,0.391365404,neg,ns,-0.002465288,0.000986549,-2.498901901,0.012975096,neg,ns,1.886889421,0.000061,0.0000339,1.798104202,0.073133345,pos,ns,0.941855947,Atxn1l,Atxn1l_Exon,8,109731584,109731633,109731584,109731585,50,-,CGCCCTTCAATGGACAGCTTTACCTCCTGTGGAATGAAAGAGGGACGGAG,"Exon (Atxn1l-201/Atxn1l, exon 4 of 4)",8,109726451,109737739,11289,2,Atxn1l-201,6106,Atxn1l-201;Atxn1l-202;Atxn1l-204;Atxn1l-203,Atxn1l;Atxn1l;Atxn1l;Atxn1l,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,4,52335,ENSMUSG00000069895,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21654,cg21221291,0.0000191,0.00000398,4.815493331,0.0000023,gain,ns,-0.0000058,0.00000675,-0.85830691,0.391386148,neg,ns,0.005437061,0.001978939,2.747462898,0.006357342,pos,ns,2.196724428,-0.0000931,0.0000681,-1.367709379,0.172393751,neg,ns,0.906636887,Zfhx3,Zfhx3_Intron,8,108790330,108790379,108790378,108790379,50,-,TACCAAGCATTTATGACATTGATTTTACAATCGGGCTGTTAACCCTCCCG,"Intron (Zfhx3-204/Zfhx3, intron 7 of 15)",8,107942644,108961630,1018987,1,Zfhx3-204,847686,Zfhx3-204;Zfhx3-202;Zfhx3-201,Zfhx3;Zfhx3;Zfhx3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,114,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13048,cg17720871,-0.00000026,0.000000282,-0.920884728,0.357826682,loss,ns,0.000000411,0.000000479,0.858242694,0.391421544,pos,ns,-0.000192681,0.000140292,-1.37343155,0.170610686,neg,ns,0.76799377,0.00000767,0.00000482,1.59067325,0.112702357,pos,ns,0.991384881,Chd3,Chd3_Exon,11,69345514,69345563,69345562,69345563,50,+,AGGATGCTGCGCTCGGACATCTGAAGGCGGGCTGCGATGGGGGGTATTCG,Promoter (<=1kb),11,69343273,69346019,2747,2,Chd3-205,456,Chd3-205;Chd3-203;Chd3-202;Chd3-211;Chd3-201;Chd3-204;Chd3-208;Rnf227-201;Rnf227-203;Rnf227-202,Chd3;Chd3;Chd3;Chd3;Chd3;Chd3;Chd3;Rnf227;Rnf227;Rnf227,0;0;0;0;0;0;0;5053;4743;4705,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,22,26,216848,ENSMUSG00000018474,conserved gene but different region,11,69345353,69345644,292,*,292,17,0.609589041,0.656613757,0.058219178,1.94E-09,CpGisland,TRUE,U10,Tr-S
6396,cg03926377,-0.0000231,0.0000101,-2.284122604,0.023040171,loss,ns,-0.0000148,0.0000172,-0.858208705,0.391440279,neg,ns,0.017712002,0.00504112,3.513505579,0.000508068,pos,ns,3.294078284,-0.000895743,0.000173364,-5.166841943,0.000000427,neg,yes,0.802619072,Zfp536,Zfp536_Intergenic_downstream,7,37133244,37133293,37133244,37133245,50,+,CGTTGTTATTTTCTGTTTCAATAATCCATTGCAGGTAGAAAAATGAAAGA,Distal Intergenic,7,37472135,37479986,7852,2,Zfp536-204,346693,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,112,243937,ENSMUSG00000043456,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7234,cg14983365,-0.0000557,0.0000104,-5.378046092,0.000000149,loss,yes,-0.0000151,0.0000176,-0.858166859,0.391463346,neg,ns,-0.018402532,0.005157067,-3.568410758,0.000415996,neg,ns,3.380910418,0.000212509,0.000177351,1.198241007,0.231738472,pos,ns,0.762681207,Cntfr,Cntfr_Intron,4,41677451,41677500,41677451,41677452,50,+,CGCCTCCATCAGCCTGATGAGTTACTGTAAGGGCCGGGCCCTGGGCCAAC,"Intron (Cntfr-203/Cntfr, intron 2 of 9)",4,41657498,41695442,37945,2,Cntfr-203,17942,Cntfr-203;Cntfr-204;Cntfr-201;Cntfr-202;Cntfr-205,Cntfr;Cntfr;Cntfr;Cntfr;Cntfr,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,12,12804,ENSMUSG00000028444,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6706,cg11027534,0.000143385,0.0000166,8.656127792,2.71E-16,gain,yes,0.0000241,0.0000281,0.858059134,0.391522731,pos,ns,0.078482249,0.008244337,9.519534424,5.14E-19,pos,yes,18.28873078,-0.001824493,0.000283522,-6.435101123,4.68E-10,neg,yes,0.426862088,Dennd1a,Dennd1a_Intron,2,38142951,38143000,38142999,38143000,50,-,CCAAAGCTTTCCTGCCACCAGTCCTTCAAATCTGACTTGGACATTACACG,"Intron (Dennd1a-201/Dennd1a, intron 3 of 21)",2,37798991,38287375,488385,2,Dennd1a-201,144375,Dennd1a-201;Dennd1a-207;Dennd1a-210;Dennd1a-204;Dennd1a-202;Dennd1a-209;Dennd1a-208,Dennd1a;Dennd1a;Dennd1a;Dennd1a;Dennd1a;Dennd1a;Dennd1a,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,46,227801,ENSMUSG00000035392,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22329,cg24562758,0.0000012,0.00000169,0.712789065,0.476512467,gain,ns,-0.00000246,0.00000287,-0.857962855,0.391575812,neg,ns,-0.001103552,0.000841131,-1.311986201,0.190495484,neg,ns,0.720115316,0.0000634,0.0000289,2.19093979,0.029200313,pos,ns,0.959490584,Mtmr14,Mtmr14_threeUTR,6,113268621,113268670,113268669,113268670,50,+,CCTTTAGATTTTCTTCTTCTGCTTCAATTTTTTGAAGCATATTACCTCCG,3' UTR,6,113237843,113281392,43550,1,Mtmr14-201,30778,Mtmr14-201;Mtmr14-205;Mtmr14-202;Mtmr14-206;Mtmr14-210;Mtmr14-204;Mtmr14-207;Mtmr14-203;Mtmr14-208,Mtmr14;Mtmr14;Mtmr14;Mtmr14;Mtmr14;Mtmr14;Mtmr14;Mtmr14;Mtmr14,0;0;0;0;12789;0;0;0;-879,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,1,97287,ENSMUSG00000030269,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18820,cg14252486,0.0000179,0.00000786,2.276538633,0.023495263,gain,ns,-0.0000115,0.0000134,-0.857900586,0.391610145,neg,ns,-0.0008168,0.003912167,-0.208784511,0.834753583,neg,ns,0.078441708,-0.000107699,0.000134539,-0.800504942,0.42403135,neg,ns,0.711234514,E130114P18Rik,E130114P18Rik_Intron,4,97581913,97581962,97581961,97581962,50,-,GCCCCACATGCCACTGCAAATGTTTTCTCAATTAGGTGTCTTATCTCCCG,"Intron (E130114P18Rik-207/E130114P18Rik, intron 1 of 4)",4,97568133,97584596,16464,2,E130114P18Rik-207,2634,E130114P18Rik-207;E130114P18Rik-201;E130114P18Rik-203;E130114P18Rik-202;E130114P18Rik-206;E130114P18Rik-204;E130114P18Rik-209;E130114P18Rik-208,E130114P18Rik;E130114P18Rik;E130114P18Rik;E130114P18Rik;E130114P18Rik;E130114P18Rik;E130114P18Rik;E130114P18Rik,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,24,319865,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5402,cg14104528,-0.00000233,0.00000152,-1.529348217,0.127197873,loss,ns,-0.00000222,0.00000259,-0.857735707,0.391701061,neg,ns,0.000270026,0.000757359,0.356536515,0.721681357,pos,ns,0.141654514,0.0000122,0.000026,0.468127777,0.640022174,pos,ns,0.956881909,Zfp451,Zfp451_Exon,1,33802604,33802653,33802604,33802605,50,+,CGCTGATATTGAGTCATATAGGCCATGTAGCTAGCAGCTCGGGCTGCAAT,"Exon (Zfp451-202/Zfp451, exon 4 of 4)",1,33761545,33814385,52841,2,Zfp451-206,11732,Zfp451-206;Zfp451-201;Zfp451-203;Zfp451-209;Zfp451-205;Zfp451-207;Zfp451-202,Zfp451;Zfp451;Zfp451;Zfp451;Zfp451;Zfp451;Zfp451,0;0;0;0;0;-1837;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,98403,ENSMUSG00000042197,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21795,cg22762541,-0.0000174,0.00000709,-2.460134942,0.014433794,loss,ns,0.0000103,0.000012,0.857570943,0.391791927,pos,ns,0.002491296,0.003527148,0.706320067,0.480519621,pos,ns,0.318288874,-0.000122347,0.000121298,-1.008646102,0.31393102,neg,ns,0.873018714,Lmo1,Lmo1_Intron,7,109167625,109167674,109167625,109167626,50,+,CGATTGATATTTTATTATCTTTCAGAAGTGCAACATGAAAGCCCTGCAGC,"Intron (Lmo1-201/Lmo1, intron 1 of 3)",7,109138572,109170519,31948,2,Lmo1-201,2845,Lmo1-201;Lmo1-202;Lmo1-203,Lmo1;Lmo1;Lmo1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,66,109594,ENSMUSG00000036111,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9448,cg24001049,-0.0000219,0.0000168,-1.306364355,0.192397086,loss,ns,0.0000245,0.0000285,0.857497378,0.391832501,pos,ns,0.014553225,0.008361407,1.74052334,0.082759418,pos,ns,1.082182573,-0.000543488,0.000287548,-1.89007615,0.059680473,neg,ns,0.63122685,Rpl17-ps6,Rpl17-ps6_Intergenic_upstream,13,48780326,48780375,48780326,48780327,50,+,CGAAAGTAATCTGAAAATTAGGGAAAATAAAAACCATGCCCACCGTTACA,Distal Intergenic,13,48763050,48763581,532,2,Rpl17-ps6-201,-16745,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,4,100416501,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25491,cg03079026,0.0000377,0.00000792,4.766194827,0.00000289,gain,ns,-0.0000115,0.0000134,-0.857464361,0.391850712,neg,ns,0.002760138,0.00393966,0.700603036,0.484076281,pos,ns,0.315086197,-0.000081,0.000135485,-0.597609795,0.550536611,neg,ns,0.030361831,Nr5a2,Nr5a2_Intron,1,136915567,136915616,136915615,136915616,50,-,AGTATCGACAGTGACAACAAATGGCATTGTCCCGTGAACATCTGTTTCCG,"Intron (Nr5a2-201/Nr5a2, intron 6 of 8)",1,136842571,136960448,117878,2,Nr5a2-201,44832,Nr5a2-201;Nr5a2-202;Nr5a2-203;Nr5a2-205;Nr5a2-204,Nr5a2;Nr5a2;Nr5a2;Nr5a2;Nr5a2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,5,26424,ENSMUSG00000026398,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
22861,cg15239238,0.0000478,0.00000516,9.25457379,3.64E-18,gain,yes,-0.00000752,0.00000877,-0.857328909,0.391925429,neg,ns,0.006291282,0.002569873,2.448090196,0.014915695,pos,ns,1.826356509,-0.000252777,0.0000884,-2.860185068,0.004521335,neg,ns,0.086327145,Sox6,Sox6_Intron,7,116034569,116034618,116034617,116034618,50,-,GAGGCTGGGCTCCCCTCCCAGACAACACAGGCAAGATGAGACAAGAGGCG,"Intron (Sox6-204/Sox6, intron 1 of 15)",7,115471344,116038744,567401,2,Sox6-204,4126,1110004F10Rik-205;Sox6-210;Sox6-202;Sox6-204;Sox6-209;Sox6-214;Sox6-208,1110004F10Rik;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6,-4779;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,37,57,20679,ENSMUSG00000051910,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
27316,cg18532900,-0.00000181,0.0000111,-0.163444529,0.870274948,loss,ns,0.0000161,0.0000188,0.857269771,0.391958053,pos,ns,-0.000272479,0.005516781,-0.049390956,0.960639542,neg,ns,0.017439541,0.00000895,0.000189722,0.047192291,0.962390359,pos,ns,0.78561866,Asb11,Asb11_Exon,X,164437164,164437213,164437164,164437165,50,-,CGTCAAAGGAAATAGAAAAGAAGCGGCTAGGATAGCAGAAGAGATCTATG,Promoter (<=1kb),20,164436994,164459170,22177,1,Asb11-202,170,Asb11-202;Asb11-203;Asb11-201;Piga-203;Piga-201;Piga-205;Piga-202,Asb11;Asb11;Asb11;Piga;Piga;Piga;Piga,0;0;-845;17377;17377;17377;17255,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,68854,ENSMUSG00000031382,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8059,cg11551236,0.0000437,0.00000625,6.984262759,1.75E-11,gain,yes,0.00000911,0.0000106,0.857242067,0.391973337,pos,ns,0.009778205,0.00311172,3.142379789,0.001837754,pos,ns,2.73571257,0.000131416,0.000107012,1.228048381,0.220360391,pos,ns,0.156646204,Pax5,Pax5_Promoter,4,44710680,44710729,44710680,44710681,50,-,CGAGCTGGGGTAGCTGATCACTGAGCTGAAACTAAACGTTTTAGGTGGAA,Promoter (<=1kb),4,44524757,44710487,185731,2,Pax5-201,-242,Pax5-201;Pax5-202;Pax5-203;Pax5-204;Pax5-205;Pax5-207;Pax5-206;Pax5-209;Pax5-210;Pax5-212;Pax5-213;Pax5-214;Pax5-215,Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5,0;0;0;0;0;0;0;0;0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,10,45,18507,ENSMUSG00000014030,conserved gene but different region,4,44710639,44710987,349,*,349,27,0.601719198,0.855004083,0.077363897,8.51E-18,CpGisland,TRUE,NA,NRS
16438,cg24260138,-0.00000274,0.000000998,-2.742288145,0.006455918,loss,ns,0.00000145,0.0000017,0.857223938,0.391983338,pos,ns,0.000435012,0.000496651,0.875890489,0.381767743,pos,ns,0.418200769,-0.0000183,0.0000171,-1.071767289,0.284658236,neg,ns,0.033860087,Ylpm1,Ylpm1_Exon,12,84996668,84996717,84996668,84996669,50,+,CGCAGCTCCAGCAGCTGCAGCAGATGCACCAGAAGCAAATGCAGTGCGTG,Promoter (<=1kb),12,84996321,85070492,74172,1,Ylpm1-207,347,Ylpm1-207;Ylpm1-201;Ylpm1-202,Ylpm1;Ylpm1;Ylpm1,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,11,13,56531,ENSMUSG00000021244,conserved gene and region,12,84996187,84996669,483,*,483,66,0.685300207,1.177004874,0.136645963,2.43E-60,CpGisland,TRUE,U1,Pr-A
17850,cg18548147,0.000096,0.000016,6.019117228,4.95E-09,gain,yes,-0.0000232,0.0000271,-0.857174173,0.392010794,neg,ns,0.001155264,0.007941901,0.145464396,0.88443876,pos,ns,0.053332233,-0.0000285,0.000273121,-0.104252453,0.917036425,neg,ns,0.663722038,Gm8512,Gm8512_Intron,10,92091741,92091790,92091789,92091790,50,-,TATAAACCCTAAAAGCTAGAAAACAGAATTTAAATACCCAAACACATACG,"Intron (Rmst-205/Rmst-205, intron 1 of 4)",10,92223004,92223474,471,2,Gm8512-201,131733,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,5,667203,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10055,cg14139870,-0.00000175,0.000000811,-2.152961083,0.032092977,loss,ns,0.00000118,0.00000138,0.85715599,0.392020826,pos,ns,0.000687653,0.000403745,1.703187149,0.089535307,pos,ns,1.048005673,-0.0000196,0.0000139,-1.412417885,0.15883005,neg,ns,0.022982393,Maml3,Maml3_fiveUTR,3,52104709,52104758,52104757,52104758,50,-,CTCAAAGTACTTTGGCTGCTCAGTTGCATTTCACAGGAACCTAGATATCG,Promoter (<=1kb),3,51685907,52105076,419170,2,Maml3-202,318,Maml3-202,Maml3,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,14,32,433586,ENSMUSG00000061143,conserved gene and region,3,52104757,52105132,376,*,376,44,0.686170213,1.011741683,0.117021277,5.57E-37,CpGisland,TRUE,U1,Pr-A
11220,cg14383000,-0.0000194,0.00000388,-5.006426304,0.000000932,loss,yes,-0.00000565,0.00000659,-0.856967502,0.392124828,neg,ns,-0.003991515,0.001930754,-2.067334701,0.039532279,neg,ns,1.403048153,0.000046,0.0000664,0.693163424,0.488725987,pos,ns,0.916624861,Epb41l4b,Epb41l4b_Exon,4,57076966,57077015,57077014,57077015,50,+,GGGTCAGTCCAAGAGAATATTCACAGCCATCTCTTCCCTACAAACAAACG,"Exon (Epb41l4b-203/Epb41l4b, exon 9 of 26)",4,56991972,57143437,151466,2,Epb41l4b-203,66422,Epb41l4b-203;Epb41l4b-201;Epb41l4b-206;Epb41l4b-205,Epb41l4b;Epb41l4b;Epb41l4b;Epb41l4b,0;0;0;61177,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,54357,ENSMUSG00000028434,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1685,cg18166255,-0.0000197,0.00000353,-5.584854615,5.12E-08,loss,yes,0.00000513,0.00000599,0.856804427,0.392214822,pos,ns,0.010102559,0.001754937,5.756650566,2.06E-08,pos,ns,7.685501261,-0.00023329,0.0000604,-3.865483532,0.000135076,neg,ns,0.935330441,Tle4,Tle4_Intron,19,14518609,14518658,14518657,14518658,50,+,TCAATAATGCTGAAATAATTGGGCACTCTGTGCACGTTTAGTGATGCTCG,"Intron (Tle4-201/Tle4, intron 6 of 19)",19,14448150,14598051,149902,2,Tle4-201,79393,Tle4-201;Tle4-202,Tle4;Tle4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,29,21888,ENSMUSG00000024642,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5710,cg02125442,-0.00000201,0.00000556,-0.362046912,0.717563645,loss,ns,0.0000081,0.00000945,0.856605821,0.39232444,pos,ns,-0.002562657,0.002769018,-0.92547514,0.355438689,neg,ns,0.449235302,0.0000817,0.0000952,0.85765919,0.391743258,pos,ns,0.885809649,Kirrel3,Kirrel3_Intron,9,34604033,34604082,34604081,34604082,50,+,AAACATACAGCCTGTTATTATGTTTGCATTAACATTTTGATAAACACACG,"Intron (Kirrel3-202/Kirrel3, intron 2 of 16)",9,34486126,35035280,549155,1,Kirrel3-202,117907,Kirrel3-202;Kirrel3-206;Kirrel3-209;Kirrel3-201;Kirrel3-208;Kirrel3-205,Kirrel3;Kirrel3;Kirrel3;Kirrel3;Kirrel3;Kirrel3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,21,67703,ENSMUSG00000032036,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18946,cg11443808,-0.0000369,0.00000508,-7.258636345,3.17E-12,loss,yes,0.00000739,0.00000863,0.856561524,0.392348892,pos,ns,-0.005053538,0.002528109,-1.998939847,0.046487643,neg,ns,1.332662471,-0.0000134,0.0000869,-0.154080286,0.87764669,neg,ns,0.899305134,Nfia,Nfia_Intron,4,98009411,98009460,98009459,98009460,50,-,AGTTGAATTTTCTTGCCATAAATTACTTTCCAAGTTAATTCCCTTTAACG,"Intron (Nfia-202/Nfia, intron 4 of 10)",4,97777608,98118871,341264,1,Nfia-202,231803,Nfia-202;Nfia-203;Nfia-205;Nfia-201;Nfia-204;Nfia-207;Nfia-206,Nfia;Nfia;Nfia;Nfia;Nfia;Nfia;Nfia,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,44,18027,ENSMUSG00000028565,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20911,cg03905867,0.0000435,0.00000917,4.741508366,0.00000324,gain,ns,-0.0000133,0.0000156,-0.856408527,0.392433352,neg,ns,0.004581154,0.004564123,1.003731536,0.316290856,pos,ns,0.499913363,0.0000461,0.00015696,0.293916172,0.769018649,pos,ns,0.164497914,Pax6,Pax6_Intron,2,105686984,105687033,105686984,105686985,50,+,CGTCTAGTTGAAGGAGACAGCTGTAGAAATGTTCCACAAGAGACCTCTGG,"Intron (Pax6-206/Pax6, intron 7 of 12)",2,105668900,105697364,28465,1,Pax6-206,18084,Pax6-206;Pax6-207;Pax6-210;Pax6-214;Pax6-208;Pax6-202;Pax6-205;Pax6-225;Pax6-204;Pax6-201;Pax6-203;Pax6-224;Pax6-219;Pax6-221;Pax6-213;Pax6-211;Pax6-222;Pax6-212;Pax6-215;Pax6-223;Pax6-209;Pax6-216,Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,78,18508,ENSMUSG00000027168,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
19811,cg14685498,-0.0000683,0.0000154,-4.428295296,0.0000132,loss,ns,0.0000224,0.0000262,0.856365267,0.392457236,pos,ns,0.052333149,0.007678175,6.815831549,4.90E-11,pos,yes,10.31022113,-0.002094239,0.000264052,-7.931167403,3.98E-14,neg,yes,0.259148119,Gm2534,Gm2534_Intron,13,101233629,101233678,101233677,101233678,50,-,AAAGAAGACTATGATGTAATGCCCATCTCAGAAATCAGAGCCAATTTCCG,"Intron (5930438M14Rik-201/5930438M14Rik-201, intron 1 of 3)",13,101348752,101349181,430,1,Gm2534-201,-115123,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,100039983,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6892,cg09073526,-0.00000739,0.00000734,-1.006305481,0.315053465,loss,ns,-0.0000107,0.0000125,-0.856362347,0.392458848,neg,ns,0.005485218,0.003654327,1.501020255,0.134368146,pos,ns,0.871703676,-0.000291466,0.000125672,-2.319260245,0.02103063,neg,ns,0.925127326,Slc35b3,Slc35b3_Intergenic_upstream,13,39336459,39336508,39336459,39336460,50,+,CGAGGAAAGGAAGTGGAATTGGTTACTGATATGCAATCATTCATTTCTTA,Distal Intergenic,13,38932136,38960875,28740,2,Slc35b3-201,-375584,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,9,11,108652,ENSMUSG00000021432,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5167,cg10146715,0.0000163,0.00000645,2.533507981,0.011785242,gain,ns,0.00000939,0.000011,0.8562515,0.39252005,pos,ns,0.002450865,0.003211818,0.763077144,0.445997681,pos,ns,0.3506674,-0.0000255,0.000110454,-0.231305069,0.817230403,neg,ns,0.074965812,Prrxl1,Prrxl1_Promoter,14,32598497,32598546,32598545,32598546,50,-,TGGGTCATAATACCAACTTTATTTTCAGTGGTGCATAAATTAATTACACG,Promoter (<=1kb),14,32599407,32649204,49798,1,Prrxl1-203,-910,Prrxl1-203;Prrxl1-204;Prrxl1-202;Prrxl1-201;Prrxl1-205,Prrxl1;Prrxl1;Prrxl1;Prrxl1;Prrxl1,0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,14,23,107751,ENSMUSG00000041730,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
14848,cg23699324,0.0000146,0.00000255,5.726449601,2.42E-08,gain,yes,-0.00000371,0.00000433,-0.856193535,0.392552056,neg,ns,0.002797977,0.001268112,2.206411471,0.02808818,pos,ns,1.551476397,-0.0000328,0.0000436,-0.751594124,0.452865396,neg,ns,0.038860978,Ctnna2,Ctnna2_fiveUTR,6,77979396,77979445,77979444,77979445,50,+,GAGGATGCTCTGCCCGGGACTCACCTCTGTGGGTCGGTGGGAGTTTCTCG,Promoter (<=1kb),6,76881637,77979699,1098063,2,Ctnna2-204,254,Ctnna2-204;Ctnna2-205;Ctnna2-202;Ctnna2-201;Ctnna2-206;Ctnna2-203,Ctnna2;Ctnna2;Ctnna2;Ctnna2;Ctnna2;Ctnna2,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,24,12386,ENSMUSG00000063063,mapped to different genes,6,77979410,77979902,493,*,493,54,0.726166329,0.831288056,0.109533469,1.51E-43,CpGisland,TRUE,U3,Pr-B
4053,cg24046726,0.000059,0.00000755,7.818076536,8.45E-14,gain,yes,-0.000011,0.0000128,-0.856139703,0.392581782,neg,ns,0.002889763,0.003757805,0.769003063,0.442476979,pos,ns,0.35410932,0.0000429,0.000129231,0.331714774,0.740328791,pos,ns,0.64342978,Gm45647,Gm45647_Intergenic_upstream,8,26672929,26672978,26672977,26672978,50,+,AAGGGAAGTCCACATTTGACAGGAAAATTAAGCCTATCAATCACTTAACG,Distal Intergenic,8,26780315,26780509,195,1,Gm45647-201,-107337,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,46,62,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9750,cg19629739,0.00000754,0.00000327,2.309714773,0.021560762,gain,ns,0.00000475,0.00000555,0.856058695,0.392626517,pos,ns,0.004225311,0.001625791,2.598926637,0.00979866,pos,ns,2.008833302,-0.000167327,0.0000559,-2.992743111,0.002987038,neg,ns,0.92274896,Trps1,Trps1_threeUTR,15,50659070,50659119,50659118,50659119,50,+,CAGAGCCAGAACTGACTCTAATGCATGATGGAATATCTTTGTTGCATACG,3' UTR,15,50654752,50889691,234940,2,Trps1-202,230572,Trps1-202;Trps1-206;Trps1-204;Trps1-205;Trps1-207;Trps1-201,Trps1;Trps1;Trps1;Trps1;Trps1;Trps1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,36,83925,ENSMUSG00000038679,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6168,cg07955696,0.00000413,0.00000671,0.615188013,0.538881894,gain,ns,0.00000975,0.0000114,0.855891572,0.392718816,pos,ns,0.003628217,0.003338523,1.086773028,0.277981423,pos,ns,0.555984226,0.000119726,0.000114812,1.042807696,0.297849901,pos,ns,0.048491183,Ptgs1,Ptgs1_Intron,2,36203316,36203365,36203316,36203317,50,+,CGCCTCCTATATTCAGAGTTGATTAGACGCTATTTCTGCCTGGATTTTCA,"Intron (Gm13429-201/Gm13429-201, intron 1 of 1)",2,36230426,36252272,21847,1,Ptgs1-201,-27061,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,5,19224,ENSMUSG00000047250,conserved gene but different region,2,36203039,36203344,306,*,306,27,0.640522876,0.862511744,0.088235294,2.41E-19,CpGisland,TRUE,U3,Pr-B
454,cg11378348,0.000108802,0.0000064,17.00327263,2.88E-46,gain,yes,0.0000093,0.0000109,0.855872591,0.3927293,pos,ns,0.011068815,0.00318479,3.475524624,0.000582578,pos,ns,3.234646222,-0.000118505,0.000109525,-1.081995169,0.280095609,neg,ns,0.274227862,Dync1i1,Dync1i1_Exon,6,6006359,6006408,6006407,6006408,50,-,CGTGGACGGGATGGGGCGCTTGGACCTCTGGAACCTCAACAATGACACCG,"Exon (Dync1i1-203/Dync1i1, exon 15 of 17)",6,5725639,6028039,302401,1,Dync1i1-203,280720,Dync1i1-203;Dync1i1-202;Dync1i1-204;Dync1i1-201;Dync1i1-206,Dync1i1;Dync1i1;Dync1i1;Dync1i1;Dync1i1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,9,13426,ENSMUSG00000029757,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26381,cg21479851,0.0000197,0.00000386,5.113699041,0.000000554,gain,yes,-0.00000561,0.00000655,-0.855840432,0.392747062,neg,ns,0.006059472,0.001920048,3.155895559,0.001757238,pos,ns,2.755169466,-0.000188262,0.000066,-2.851141031,0.004648515,neg,ns,0.057013305,Gsx1,Gsx1_Promoter,5,147186592,147186641,147186640,147186641,50,+,AGAGTTCTCTTTGTGTTTGCTTATCCTTCGCTGTCACACACTTTAATTCG,Promoter (2-3kb),5,147188696,147190947,2252,1,Gsx1-201,-2055,Gsx1-201,Gsx1,-2055,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,6,20,14842,ENSMUSG00000053129,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
1364,cg02784437,0.0000101,0.00000194,5.202674274,0.000000358,gain,yes,-0.00000283,0.0000033,-0.855665351,0.392843775,neg,ns,0.001710673,0.000967697,1.767778165,0.07808165,pos,ns,1.10745102,-0.000015,0.0000333,-0.450878796,0.652392114,neg,ns,0.018962927,Sox1,Sox1_Intron,8,12431378,12431427,12431426,12431427,50,+,TAATGCGATCTTTATGTAAAGCTAACAGCGGATAATTGTCTATTTTCTCG,"Intron (Sox1ot-201/Sox1ot-201, intron 7 of 8)",8,12395295,12400126,4832,1,Sox1-201,36083,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,15,20664,ENSMUSG00000096014,mapped to different genes,8,12431094,12431559,466,*,466,37,0.603004292,0.882846902,0.079399142,1.38E-24,CpGisland,TRUE,U13,Hc-P
21086,cg24240065,-0.0000176,0.0000136,-1.29211614,0.197279313,loss,ns,0.0000198,0.0000231,0.855565085,0.392899167,pos,ns,0.008699694,0.006769195,1.285188784,0.19968567,pos,ns,0.699653101,-0.000690442,0.000232792,-2.965917995,0.003252309,neg,ns,0.764248207,Usp24,Usp24_Exon,4,106402128,106402177,106402128,106402129,50,+,CGCCATCAGTCAACAGGACTTTCATCCAAAGTATGGAAAATGCACGTTGT,"Exon (Usp24-204/Usp24, exon 41 of 68)",4,106316213,106441317,125105,1,Usp24-204,85915,Usp24-204;Usp24-201,Usp24;Usp24,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,5,329908,ENSMUSG00000028514,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9995,cg19808756,-0.00000334,0.00000431,-0.774653532,0.439134854,loss,ns,-0.00000627,0.00000733,-0.855549799,0.392907613,neg,ns,0.002852272,0.002146574,1.328755377,0.184905917,pos,ns,0.733049192,-0.000214185,0.0000738,-2.901434055,0.003980502,neg,ns,0.938294309,Satb1,Satb1_Intron,17,51803627,51803676,51803675,51803676,50,+,GACAGATTTCATTTTGCGCATCAAACAGATGCATCTGGAGATTGCTCTCG,"Intron (Satb1-208/Satb1, intron 4 of 10)",17,51736187,51832672,96486,2,Satb1-208,28996,Satb1-208;Satb1-213;Satb1-204;Satb1-214;Satb1-203;Satb1-211;Satb1-207;Satb1-206;Satb1-202;Satb1-201;Satb1-209,Satb1;Satb1;Satb1;Satb1;Satb1;Satb1;Satb1;Satb1;Satb1;Satb1;Satb1,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,28,36,20230,ENSMUSG00000023927,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17118,cg07672598,-0.0000027,0.00000991,-0.272405826,0.785491346,loss,ns,-0.0000144,0.0000168,-0.855498708,0.39293584,neg,ns,-0.005813216,0.004932919,-1.178453575,0.239519607,neg,ns,0.620658929,0.000131106,0.000169643,0.772837846,0.4402072,pos,ns,0.830093981,Nkd1,Nkd1_Intergenic_upstream,8,88484955,88485004,88485003,88485004,50,-,TCAAGGCTTGGATTTTGTTGACAATAATGAGATCACCCAGACAATTATCG,Distal Intergenic,8,88521354,88593618,72265,1,Nkd1-201,-36399,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,3,93960,ENSMUSG00000031661,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27475,cg23523862,0.00000309,0.00000317,0.975074972,0.33028333,gain,ns,-0.0000046,0.00000538,-0.855402168,0.392989182,neg,ns,0.000376285,0.001575327,0.238861756,0.811370612,pos,ns,0.090780727,-0.0000421,0.0000542,-0.777802187,0.437278835,neg,ns,0.898443664,Pbx1,Pbx1_Intron,1,168328055,168328104,168328103,168328104,50,-,TCTTTCAGTCTAACAAGCTGAGGGGCTGTGGCTGCTGCCACATTGGCGCG,"Intron (Pbx1-208/Pbx1, intron 2 of 7)",1,168119364,168432270,312907,2,Pbx1-208,104166,Pbx1-208;Pbx1-205;Pbx1-206;Pbx1-201;Pbx1-202;Pbx1-204,Pbx1;Pbx1;Pbx1;Pbx1;Pbx1;Pbx1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,84,18514,ENSMUSG00000052534,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15940,cg01460860,0.00000535,0.00000815,0.655928839,0.512356436,gain,ns,0.0000118,0.0000139,0.855152963,0.393126896,pos,ns,-0.001574639,0.004058567,-0.38797913,0.698297758,neg,ns,0.155959352,0.0000605,0.000139574,0.433164509,0.665196495,pos,ns,0.906851308,Dmd,Dmd_Exon,X,83928926,83928975,83928926,83928927,50,+,CGCTGGCGGGAAATTGAGAGCAAATTTGCTCAGTTTCGAAGACTCAACTT,"Exon (Dmd-203/Dmd, exon 41 of 79)",20,82948903,85206141,2257239,1,Dmd-203,980023,Dmd-203;Dmd-215;Dmd-209,Dmd;Dmd;Dmd,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,20,28,13405,ENSMUSG00000045103,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8719,cg19142614,0.00000306,0.00000402,0.761421551,0.446984158,gain,ns,0.00000584,0.00000684,0.855014209,0.393203586,pos,ns,0.001230607,0.00200261,0.614501843,0.539334498,pos,ns,0.2681418,-0.0000156,0.0000689,-0.226512158,0.820952389,neg,ns,0.903812299,Gm13478,Gm13478_Intergenic_upstream,2,45605912,45605961,45605960,45605961,50,-,CTGGTGTAGAGACACAAGAAATTATAGAGCAGACACTGTCCAGGACAACG,Distal Intergenic,2,45647191,45647603,413,1,Gm13478-201,-41279,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,10,100042661,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2189,cg12311671,-0.0000376,0.00000747,-5.035943206,0.000000808,loss,yes,-0.0000109,0.0000127,-0.854992115,0.393215798,neg,ns,-0.006638486,0.003719753,-1.784657741,0.075294646,neg,ns,1.123235905,0.0000079,0.000127922,0.061794016,0.95076669,pos,ns,0.863094185,Pou6f2,Pou6f2_Intron,13,18336540,18336589,18336540,18336541,50,+,CGATGTATGATAAATGAAGTAGCATGCTACTTATACGCTTATCATGTTCC,"Intron (Pou6f2-201/Pou6f2, intron 2 of 7)",13,18121098,18382041,260944,2,Pou6f2-201,45452,Pou6f2-201;Pou6f2-202;Pou6f2-203,Pou6f2;Pou6f2;Pou6f2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,18,218030,ENSMUSG00000009734,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9419,cg14944600,0.00000014,0.00000559,0.024946174,0.980113947,gain,ns,-0.00000812,0.0000095,-0.854853144,0.393292619,neg,ns,-0.002610553,0.00278356,-0.93784673,0.349053274,neg,ns,0.457108284,-0.0000383,0.0000957,-0.400410836,0.689129741,neg,ns,0.816911342,Zbtb16,Zbtb16_Intron,9,48678510,48678559,48678558,48678559,50,+,AGCTGTTCTCTATCCCACAAATCCGATTTAATCAGACAAGCCAGCCAGCG,"Intron (Zbtb16-201/Zbtb16, intron 4 of 6)",9,48654297,48835945,181649,2,Zbtb16-201,157386,Zbtb16-201;Zbtb16-202,Zbtb16;Zbtb16,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,37,235320,ENSMUSG00000066687,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11563,cg18770859,-0.00000228,0.00000129,-1.759012685,0.079561889,loss,ns,0.00000188,0.0000022,0.854784102,0.393330788,pos,ns,0.00053828,0.000644483,0.835212217,0.404241456,pos,ns,0.39335915,-0.000046,0.0000222,-2.073738455,0.038929044,neg,ns,0.970424774,Fbxo33,Fbxo33_threeUTR,12,59201118,59201167,59201118,59201119,50,+,CGTACCACTTAAAACTGGGGTCAGGTGGAAGTCTCACAGAGACCACGTCT,3' UTR,12,59200655,59219725,19071,2,Fbxo33-201,18558,Fbxo33-201;Fbxo33-204;Fbxo33-202;Fbxo33-203,Fbxo33;Fbxo33;Fbxo33;Fbxo33,0;0;0;17634,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,7,11,70611,ENSMUSG00000035329,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4870,cg18872272,-0.0000366,0.00000847,-4.325122165,0.0000206,loss,ns,-0.0000123,0.0000144,-0.854701764,0.39337631,neg,ns,-0.007689921,0.004214956,-1.824436965,0.069048489,neg,ns,1.160845818,-0.000113904,0.000144952,-0.785804614,0.432582165,neg,ns,0.925065437,Acap2,Acap2_threeUTR,16,31101833,31101882,31101881,31101882,50,+,CCATAAAGTCCTTCTGATTCCCGCATCTCTTCATTCATTCTTGCTAAACG,3' UTR,16,31092412,31201245,108834,2,Acap2-204,99363,Acap2-204;Acap2-201;Acap2-203;Acap2-202;Acap2-206;Acap2-207,Acap2;Acap2;Acap2;Acap2;Acap2;Acap2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,4,78618,ENSMUSG00000049076,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16999,cg11023965,-0.00000696,0.00000897,-0.775688507,0.438524273,loss,ns,-0.000013,0.0000152,-0.854692164,0.393381618,neg,ns,-0.002254912,0.004465286,-0.504987087,0.613926706,neg,ns,0.211883474,-0.000124746,0.000153561,-0.812353747,0.417212057,neg,ns,0.718398457,Insrr,Insrr_Exon,3,87813566,87813615,87813566,87813567,50,-,CGTCTCCTGGGTGTGGTATCTCAGGGCCAGCCAACTCTGGTCATCATGGA,"Exon (Insrr-201/Insrr, exon 18 of 22)",3,87796951,87816101,19151,1,Insrr-201,16615,Insrr-201;Insrr-202;Pear1-201;Pear1-203,Insrr;Insrr;Pear1;Pear1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,23920,ENSMUSG00000005640,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20561,cg12783132,0.0000366,0.000016,2.289240001,0.022737456,gain,ns,-0.0000232,0.0000271,-0.854684554,0.393385825,neg,ns,0.010756761,0.007951898,1.352728839,0.177128073,pos,ns,0.751712601,-0.000164331,0.000273465,-0.600919483,0.548332726,neg,ns,0.236996801,Pde1b,Pde1b_Exon,15,103503514,103503563,103503514,103503515,50,-,CGGATTGCCCGTCACCCCTGGAGCTGAAGTCAGCCCCCAGCAAGAAGATG,Promoter (<=1kb),15,103503034,103530051,27018,1,Pde1b-202,480,Nckap1l-203;Nckap1l-201;Nckap1l-205;Pde1b-202;Pde1b-201;Pde1b-203,Nckap1l;Nckap1l;Nckap1l;Pde1b;Pde1b;Pde1b,0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,18574,ENSMUSG00000022489,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
2019,cg04712826,0.00000366,0.00000537,0.682100136,0.495684954,gain,ns,0.0000078,0.00000912,0.854622497,0.393420137,pos,ns,-0.000657991,0.002672196,-0.246236166,0.805662383,neg,ns,0.093846914,-0.0000198,0.0000919,-0.215013371,0.829898274,neg,ns,0.907091761,Prune2,Prune2_Exon,19,17199134,17199183,17199182,17199183,50,+,ATGCCATCATTGTGTTTGCCGCCTGTTTTCTGCCAGACAGCAGTCGGGCG,"Exon (Prune2-201/Prune2, exon 13 of 20)",19,16956118,17223932,267815,1,Prune2-201,243016,Prune2-201;Prune2-209;Prune2-202;Prune2-207;Prune2-203,Prune2;Prune2;Prune2;Prune2;Prune2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,8,353211,ENSMUSG00000039126,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11070,cg05602488,0.000112022,0.0000138,8.141151356,9.63E-15,gain,yes,-0.00002,0.0000234,-0.854603693,0.393430534,neg,ns,0.026739369,0.006848466,3.904431655,0.000115933,pos,ns,3.935793849,-0.0009791,0.000235518,-4.157216116,0.0000417,neg,ns,0.315137202,Znrf4,Znrf4_Intergenic_downstream,17,56509799,56509848,56509799,56509800,50,+,CGGTTCCCTTTAGCGTAGCTGACAGCTAATTTGTGGGAAGTTTAATTACA,Downstream (1-2kb),17,56511248,56512431,1184,2,Znrf4-201,2583,Znrf4-201,Znrf4,2583,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,1,1,20834,ENSMUSG00000044526,conserved gene but different region,17,56509772,56509890,119,*,119,9,0.512605042,1.225400458,0.075630252,0.00000392,CpGisland,TRUE,U13,Hc-P
26293,cg00476429,0.00000752,0.00000428,1.757593092,0.079803762,gain,ns,-0.00000622,0.00000727,-0.854528966,0.393471855,neg,ns,-0.005124529,0.002130838,-2.404935685,0.016761245,neg,ns,1.775693728,0.000190832,0.0000733,2.604170416,0.009653216,pos,ns,0.94909423,Ralgapa2,Ralgapa2_Intron,2,146290974,146291023,146291022,146291023,50,+,ATGCGAAGGCCTATTACTTTATTCGGTGCCACCGCTGACAGGCAGCCACG,"Intron (Ralgapa2-202/Ralgapa2, intron 38 of 40)",2,146239879,146512004,272126,2,Ralgapa2-202,220981,Ralgapa2-202;Ralgapa2-211;Ralgapa2-210;Ralgapa2-205;Ralgapa2-208,Ralgapa2;Ralgapa2;Ralgapa2;Ralgapa2;Ralgapa2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,26,241694,ENSMUSG00000037110,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26776,cg01431336,0.00000248,0.00000351,0.708376625,0.479243711,gain,ns,0.00000509,0.00000596,0.854444286,0.393518682,pos,ns,0.003874155,0.001744955,2.220202899,0.027127941,pos,ns,1.56658317,-0.000205481,0.00006,-3.424172173,0.000699653,neg,ns,0.899571946,Iqsec2,Iqsec2_threeUTR,X,152222920,152222969,152222968,152222969,50,-,AGGGGTCTGTTATTAGCAGTCCACGCCCTCACCAGAGGATGCCACCTCCG,3' UTR,20,152144268,152225235,80968,1,Iqsec2-207,78652,Iqsec2-207;Iqsec2-202;Iqsec2-203;Iqsec2-201,Iqsec2;Iqsec2;Iqsec2;Iqsec2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,16,245666,ENSMUSG00000041115,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3756,cg02253804,-0.00000427,0.00000407,-1.048523647,0.295214182,loss,ns,-0.00000591,0.00000692,-0.854440637,0.3935207,neg,ns,-0.000857126,0.002026085,-0.423045478,0.6725554,neg,ns,0.172271936,0.00000276,0.0000697,0.039548468,0.968478569,pos,ns,0.916496298,5730522E02Rik,5730522E02Rik_Intron,11,25287570,25287619,25287618,25287619,50,+,GCTATCTGCTGACTGTGGGATGTCATGTACGTACCCTATAGCTATGCGCG,"Intron (4933427E13Rik-204/4933427E13Rik-204, intron 1 of 1)",11,25602816,25620098,17283,2,5730522E02Rik-205,332479,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,90,70626,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23945,cg13306822,-0.000000832,0.00000472,-0.176082072,0.860344435,loss,ns,0.00000686,0.00000803,0.85422058,0.393642405,pos,ns,0.003261665,0.002351532,1.38703859,0.166426452,pos,ns,0.778777644,-0.000145959,0.0000809,-1.804882742,0.072063293,neg,ns,0.891463454,Gm9240,Gm9240_Intron,7,121259673,121259722,121259673,121259674,50,-,CGTTTAGGGTAATGCGGATCTATCTCAAAGGTTCCGCTCAGTTTATGTGC,"Intron (Gm45079-201/Gm45079-201, intron 1 of 1)",7,121223253,121223994,742,2,Gm9240-201,-35728,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,4,668556,NA,mapped to different genes,7,121259531,121259891,361,*,361,19,0.540166205,0.735628486,0.052631579,9.81E-10,CpGisland,TRUE,U15,NS
1488,cg18851276,-0.00000188,0.000004,-0.470137228,0.638587547,loss,ns,0.0000058,0.00000679,0.854203963,0.393651596,pos,ns,-0.0000699,0.0019899,-0.035127705,0.972000517,neg,ns,0.012333504,0.0000307,0.0000684,0.449211863,0.653592716,pos,ns,0.939470234,Gm11819,Gm11819_Intergenic_upstream,4,13248535,13248584,13248583,13248584,50,-,AAATTTCCCTGTCGCAGATGTTTCAACAGAAGGTGCTTGCATGCCATTCG,Distal Intergenic,4,13444770,13445141,372,1,Gm11819-201,-196235,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,19,22,,NA,mapped to different genes,4,13248547,13248714,168,*,168,12,0.535714286,0.997525977,0.071428571,8.86E-08,CpGisland,TRUE,U15,NS
24330,cg00083068,-0.00000114,0.0000097,-0.118039872,0.906112511,loss,ns,0.0000141,0.0000165,0.854157575,0.393677254,pos,ns,-0.001207248,0.004825539,-0.250178838,0.802614764,neg,ns,0.095492856,0.0000811,0.00016595,0.488644718,0.625438741,pos,ns,0.799715337,Pou3f1,Pou3f1_Intergenic_downstream,4,124664350,124664399,124664350,124664351,50,+,CGGAGGCATATGGTCTCGTACACAAGAAATAATGTTCATGTTAAATCAGA,Distal Intergenic,4,124656807,124660655,3849,1,Pou3f1-201,7543,Pou3f1-201,Pou3f1,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,11,85,18991,ENSMUSG00000090125,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
12985,cg01798185,-0.00000299,0.00000242,-1.233389429,0.218364886,loss,ns,-0.00000352,0.00000412,-0.854083941,0.393717986,neg,ns,0.00039061,0.001206737,0.323690876,0.746390342,pos,ns,0.127033989,0.00000485,0.0000415,0.116824599,0.907074699,pos,ns,0.064981361,Stc1,Stc1_Promoter,14,69029717,69029766,69029717,69029718,50,+,CGCTCTGCTGAGGGTATTTCATTGCATAAGCCTAGCCTGATTGCCTGAAA,Promoter (<=1kb),14,69029238,69041804,12567,1,Stc1-201,479,Stc1-201,Stc1,0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,5,9,20855,ENSMUSG00000014813,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
18044,cg06309757,0.0000369,0.0000102,3.603826998,0.000365178,gain,ns,0.0000149,0.0000174,0.854036585,0.393744183,pos,ns,0.017574684,0.005094665,3.44962525,0.00063912,pos,ns,3.194417332,-0.000361591,0.000175205,-2.063818028,0.039866928,neg,ns,0.726189077,Pola1,Pola1_Intron,X,93409132,93409181,93409180,93409181,50,-,CTGCAGCTGCAGTAAATTCCAAACAGTTTTGATGAAGCTTAACAAGAACG,"Intron (Pola1-201/Pola1, intron 35 of 36)",20,93304767,93632155,327389,2,Pola1-201,222974,Pola1-201,Pola1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,59,62,18968,ENSMUSG00000006678,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14588,cg19872317,-0.00000348,0.00000154,-2.256283802,0.02474932,loss,ns,0.00000223,0.00000262,0.853976042,0.393777676,pos,ns,-0.000805586,0.000766676,-1.05075125,0.294191262,neg,ns,0.531370231,0.0000319,0.0000264,1.210385748,0.227052969,pos,ns,0.059490381,Sptb,Sptb_fiveUTR,12,76710054,76710103,76710102,76710103,50,+,ACCCGCCCAGAGATATAAATAACATTATCTGAGGAGGGACATTCCTGCCG,Promoter (<=1kb),12,76580488,76710547,130060,2,Sptb-201,444,Sptb-201;Sptb-202,Sptb;Sptb,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,6,20741,ENSMUSG00000021061,conserved gene but different region,12,76710102,76710748,647,*,647,53,0.680061824,0.708491736,0.081916538,1.15E-35,CpGisland,TRUE,NA,NRS
15398,cg26828755,0.00000397,0.00000483,0.821945936,0.411739389,gain,ns,0.00000701,0.00000821,0.85394448,0.393795138,pos,ns,0.007089813,0.002404107,2.94904216,0.003430069,pos,ns,2.464697143,-0.000304238,0.0000827,-3.679837316,0.000275135,neg,ns,0.942950684,Gria2,Gria2_threeUTR,3,80691380,80691429,80691428,80691429,50,-,TTTGTCCAACAGGCCTTGTTCATTCAGTTTTAGTACTGCGAGGTTAACCG,3' UTR,3,80681450,80802835,121386,2,Gria2-201,111406,Gria2-201;Gria2-202;Gria2-203;Gria2-206,Gria2;Gria2;Gria2;Gria2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,12,19,14800,ENSMUSG00000033981,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22746,cg19719141,-0.000000419,0.00000833,-0.05027298,0.959937232,loss,ns,-0.0000121,0.0000142,-0.853543213,0.394017174,neg,ns,0.005187002,0.00414617,1.251034566,0.211865189,pos,ns,0.673940394,-0.0000843,0.000142586,-0.591538124,0.554591028,neg,ns,0.573217192,6430628N08Rik,6430628N08Rik_Intergenic_downstream,4,115904579,115904628,115904627,115904628,50,+,GGCCACGCTTTATTAAATTCTCATAAACCTGTCAGGGGGGACAGGGCTCG,Distal Intergenic,4,115890666,115899227,8562,1,6430628N08Rik-202,13913,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,76237,ENSMUSG00000034185,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20551,cg23311800,0.0000301,0.0000113,2.671636656,0.007947083,gain,ns,0.0000163,0.0000191,0.853476717,0.394053976,pos,ns,0.005338593,0.00559995,0.953328606,0.341166347,pos,ns,0.467033815,-0.000104313,0.000192582,-0.541654238,0.588445797,neg,ns,0.665015296,Elf5,Elf5_Intron,2,103424012,103424061,103424012,103424013,50,-,CGTCATCAAAGGGGCTGTGCGTAAACCTGAAAAACCAAACGGACCTGTCT,"Intron (Elf5-208/Elf5, intron 1 of 6)",2,103411688,103450984,39297,1,Elf5-208,12324,Elf5-208;Elf5-206;Elf5-204;Elf5-201;Elf5-207;Elf5-203,Elf5;Elf5;Elf5;Elf5;Elf5;Elf5,0;0;0;-1;-65;-767,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,13711,ENSMUSG00000027186,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23794,cg11543317,0.000093,0.0000154,6.021043389,4.90E-09,gain,yes,-0.0000224,0.0000262,-0.853434011,0.394077613,neg,ns,0.024339686,0.007686491,3.166553875,0.001696056,pos,ns,2.770559839,-0.00047712,0.000264338,-1.804961513,0.072050935,neg,ns,0.47074175,Mbnl2,Mbnl2_Intron,14,120395645,120395694,120395693,120395694,50,+,TGTATGTTAATTCGCTTGAATCCCATTGGCCCACTGCCATCATGTGCTCG,"Intron (Mbnl2-201/Mbnl2, intron 5 of 8)",14,120275669,120431697,156029,1,Mbnl2-201,119976,Mbnl2-201;Mbnl2-204;Mbnl2-206;Mbnl2-202;Mbnl2-203;Mbnl2-208;Mbnl2-210;Mbnl2-205,Mbnl2;Mbnl2;Mbnl2;Mbnl2;Mbnl2;Mbnl2;Mbnl2;Mbnl2,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,16,105559,ENSMUSG00000022139,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23916,cg20350153,-0.00000411,0.00000634,-0.647206719,0.51797712,loss,ns,0.0000092,0.0000108,0.853269953,0.394168423,pos,ns,-0.001763616,0.003157583,-0.558533563,0.576883289,neg,ns,0.238912041,-0.0000421,0.000108589,-0.387420338,0.698710904,neg,ns,0.874619224,Rwdd3,Rwdd3_Intergenic_downstream,3,121100407,121100456,121100407,121100408,50,-,CGTATGTTCTATGTTATGTGGCAGTTGCTATGGTAACAACCTTTATTTTC,Distal Intergenic,3,121155400,121156820,1421,2,Rwdd3-208,56413,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,4,66568,ENSMUSG00000028133,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8426,cg01502462,0.000000404,0.00000103,0.393535256,0.694194714,gain,ns,0.00000149,0.00000174,0.853131211,0.394245231,pos,ns,0.0000238,0.000510619,0.046512652,0.962931599,pos,ns,0.016404561,0.0000207,0.0000176,1.18158552,0.238275832,pos,ns,0.032310941,Zeb2,Zeb2_fiveUTR,2,45111148,45111197,45111148,45111149,50,-,CGAGGATTAGTTTAAACAGGGGGCTATAAAAGATGTAACAGATGCAAACT,Promoter (<=1kb),2,45001691,45111174,109484,2,Zeb2-220,0,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219;Zeb2-211;Zeb2-210;Zeb2-205;Zeb2-223;Zeb2-217;Zeb2-225;Zeb2-204;Zeb2-206,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;-1072;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,15,158,24136,ENSMUSG00000026872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
3246,cg01351677,-0.00000608,0.00000434,-1.40012851,0.162474854,loss,ns,0.00000629,0.00000738,0.853041882,0.394294688,pos,ns,-0.003465877,0.002161588,-1.60339371,0.109866096,neg,ns,0.959136309,-0.000055,0.0000743,-0.740496529,0.459559245,neg,ns,0.921922622,Gm11888,Gm11888_Intron,4,23341375,23341424,23341423,23341424,50,+,GATGACAGCTGCAACACGTACTCAGGCGCAATAAACAGCTAAATGAGGCG,"Intron (Gm11884-201/Gm11884-201, intron 1 of 4)",4,23484820,23486020,1201,1,Gm11888-201,-143396,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,14,625462,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3708,cg16677609,0.0000429,0.00000464,9.256638851,3.59E-18,gain,yes,-0.00000672,0.00000787,-0.853032843,0.394299692,neg,ns,0.005765602,0.002307047,2.499125867,0.012967064,pos,ns,1.887158344,-0.0000538,0.0000793,-0.678594651,0.497900992,neg,ns,0.145524998,Gm47909,Gm47909_Intergenic_upstream,14,25109060,25109109,25109060,25109061,50,+,CGACCTTTGGGGCCTGGTGGTTGTTAATGCATGAGTGACTGCCTGCATTG,Distal Intergenic,14,25089939,25090406,468,2,Gm47909-201,-18654,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,17,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
19519,cg00294442,-0.000000483,0.000000595,-0.810967766,0.418006354,loss,ns,0.000000862,0.00000101,0.852950876,0.394345077,pos,ns,0.000666121,0.000296219,2.24874508,0.025230734,pos,ns,1.598070113,-0.0000247,0.0000102,-2.428563855,0.01572723,neg,ns,0.018060259,Foxp1,Foxp1_Exon,6,99522539,99522588,99522587,99522588,50,-,CAAACTCACCCGCTGCAAATGGTCTCTCGGTGCAAACTAAGGTGTTTTCG,Promoter (<=1kb),6,99260357,99522647,262291,2,Foxp1-227,59,Foxp1-220;Foxp1-224;Foxp1-227;Foxp1-216;Gm20696-201;Gm20696-203,Foxp1;Foxp1;Foxp1;Foxp1;Gm20696;Gm20696,0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,87,108655,ENSMUSG00000030067,mapped to different genes,6,99522539,99523073,535,*,535,68,0.674766355,1.135881104,0.127102804,1.18E-59,CpGisland,TRUE,U1,Pr-A
19198,cg16113215,0.0000783,0.0000102,7.673223587,2.20E-13,gain,yes,-0.0000148,0.0000173,-0.852950596,0.394345232,neg,ns,0.003574406,0.005081821,0.703371102,0.482352432,pos,ns,0.316635527,0.0000975,0.000174763,0.557762689,0.577408993,pos,ns,0.649679713,Wnt10b,Wnt10b_Exon,15,98774173,98774222,98774173,98774174,50,+,CGGGGAGCTTCCCTGGAATCCAAGAAATCCCGAGAGAACTTCTCTCCAAA,"Exon (Wnt10b-201/Wnt10b, exon 4 of 5)",15,98770712,98778143,7432,2,Wnt10b-206,3921,Wnt10b-206;Wnt10b-201;Wnt10b-203;Wnt10b-204;Wnt10b-202;Wnt10b-207;Wnt10b-205,Wnt10b;Wnt10b;Wnt10b;Wnt10b;Wnt10b;Wnt10b;Wnt10b,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,4,22410,ENSMUSG00000022996,conserved gene and region,15,98774083,98774271,189,*,189,12,0.613756614,0.681490385,0.063492064,0.00000032,CpGisland,TRUE,U13,Hc-P
1475,cg21686258,-0.0000188,0.00000603,-3.112010544,0.002031248,loss,ns,0.00000874,0.0000102,0.852862589,0.394393965,pos,ns,0.004335602,0.003001871,1.444299932,0.149664544,pos,ns,0.824881073,-0.000213676,0.000103234,-2.069816777,0.039297527,neg,ns,0.903711969,Triqk,Triqk_Intergenic_downstream,4,13146925,13146974,13146925,13146926,50,+,CGATGCTGACAGTGTGCATTCGCAGATGCCACCATATGGGTCTCGAAAAA,Distal Intergenic,4,12917967,12981070,63104,1,Triqk-202,228958,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,11,208820,ENSMUSG00000055963,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15211,cg21306693,-0.000096,0.0000139,-6.922759478,2.56E-11,loss,yes,0.0000201,0.0000236,0.852527167,0.394579733,pos,ns,-0.013675959,0.006901197,-1.9816792,0.048398212,neg,ns,1.315170682,0.000282712,0.000237332,1.191212754,0.234481319,pos,ns,0.865989097,Gtpbp1,Gtpbp1_fiveUTR,15,79694153,79694202,79694201,79694202,50,-,TAGCTGGTTCTAGTGAGCCCTACATCAGAGCAGTATGACAGCCTACTTCG,Promoter (<=1kb),15,79694180,79712173,17994,1,Gtpbp1-206,0,Gtpbp1-201;Gtpbp1-208;Gtpbp1-203;Gtpbp1-206,Gtpbp1;Gtpbp1;Gtpbp1;Gtpbp1,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,4,14904,ENSMUSG00000042535,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12918,cg13505775,0.000000094,0.00000154,0.061097707,0.951320766,gain,ns,-0.00000223,0.00000261,-0.852317631,0.394695809,neg,ns,0.001956345,0.000765891,2.554338453,0.011116847,pos,ns,1.954018369,-0.0000752,0.0000263,-2.85350249,0.004614998,neg,ns,0.064527041,Arid5b,Arid5b_fiveUTR,10,68278672,68278721,68278672,68278673,50,-,CGGAGGAGAGCGAAATACCTGGAGTGAGTTGGGCTCCATCTCGACGTTCT,Promoter (<=1kb),10,68096016,68278721,182706,2,Arid5b-201,0,Arid5b-204;Arid5b-201;Arid5b-202,Arid5b;Arid5b;Arid5b,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,33,71371,ENSMUSG00000019947,conserved gene but different region,10,68278648,68278717,70,*,70,8,0.685714286,1.062618596,0.114285714,0.000000774,CpGisland,TRUE,NA,NRS
5536,cg18039160,-0.0000797,0.0000106,-7.517455223,6.05E-13,loss,yes,-0.0000154,0.000018,-0.852302727,0.394704066,neg,ns,-0.012892283,0.005277984,-2.442652869,0.015137866,neg,ns,1.819935336,0.000161686,0.000181509,0.8907871,0.373734218,pos,ns,0.881267533,Hdac9,Hdac9_Intron,12,34220601,34220650,34220649,34220650,50,+,TGTGGAAGTATCAATTCATTTAAGGATCATAAAAGTTGCCCTGATCTGCG,"Intron (Hdac9-205/Hdac9, intron 18 of 24)",12,34047580,34528328,480749,2,Hdac9-205,307678,Hdac9-205;Hdac9-204;Hdac9-206;Hdac9-210;Hdac9-207,Hdac9;Hdac9;Hdac9;Hdac9;Hdac9,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,19,31,79221,ENSMUSG00000004698,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5174,cg02554345,0.0000401,0.00000902,4.449598264,0.000012,gain,ns,-0.0000131,0.0000153,-0.852231192,0.394743698,neg,ns,0.011382103,0.004490576,2.534664532,0.011747213,pos,ns,1.930065163,-0.000274923,0.000154431,-1.780239885,0.076016078,neg,ns,0.319388554,Prrxl1,Prrxl1_Promoter,14,32598890,32598939,32598938,32598939,50,+,AAATTCAGGGACCCCTTGCTGAGAACAAAATCAAACTTTCCTTTTGTACG,Promoter (<=1kb),14,32599407,32649204,49798,1,Prrxl1-203,-468,Prrxl1-203;Prrxl1-204;Prrxl1-202;Prrxl1-201;Prrxl1-205,Prrxl1;Prrxl1;Prrxl1;Prrxl1;Prrxl1,0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,14,23,107751,ENSMUSG00000041730,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
15099,cg01314601,-0.000000125,0.00000464,-0.026884231,0.978569369,loss,ns,-0.00000671,0.00000788,-0.852136808,0.394795995,neg,ns,-0.00330527,0.002307743,-1.432252083,0.153079232,neg,ns,0.815083725,0.000136931,0.0000794,1.725370584,0.085457273,pos,ns,0.835213819,Sox10,Sox10_Promoter,15,79165919,79165968,79165967,79165968,50,+,GTGCCCAGACTCTTGTTCGGGGCCTTGAAACAGTGAGCTGTCTTTGTTCG,Promoter (<=1kb),15,79154908,79165240,10333,2,Sox10-203,-679,Sox10-203;Sox10-201;Sox10-202;Sox10-204,Sox10;Sox10;Sox10;Sox10,-679;-1429;-1445;-1433,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,3,20665,ENSMUSG00000033006,mapped to different genes,15,79165825,79165983,159,*,159,10,0.616352201,0.741258741,0.062893082,0.00000467,CpGisland,TRUE,U13,Hc-P
24333,cg22862561,0.00000549,0.00000467,1.175508962,0.240693178,gain,ns,-0.00000676,0.00000794,-0.852123823,0.39480319,neg,ns,0.010579278,0.002325462,4.549323101,0.00000773,pos,ns,5.111623408,-0.000335969,0.00008,-4.201056064,0.0000348,neg,ns,0.039760447,Pou3f1,Pou3f1_Intergenic_downstream,4,124672425,124672474,124672425,124672426,50,+,CGCTCATTAGGATGCGTGGCGTTTGGCTGCGGTCCCACACCTTGCAGCTC,Distal Intergenic,4,124656807,124660655,3849,1,Pou3f1-201,15618,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,11,85,18991,ENSMUSG00000090125,mapped to different genes,4,124672392,124672501,110,*,110,9,0.609090909,0.906593407,0.081818182,0.00000205,CpGisland,TRUE,U13,Hc-P
4655,cg20144227,-0.0000102,0.00000916,-1.10992727,0.267890594,loss,ns,0.0000133,0.0000156,0.852101664,0.394815468,pos,ns,-0.004043611,0.004556853,-0.887369358,0.375568002,neg,ns,0.425311416,0.0000197,0.00015671,0.125713282,0.900040377,pos,ns,0.886990597,Cacna1d,Cacna1d_threeUTR,14,30066092,30066141,30066092,30066093,50,-,CGTTTCTTGAATTTCCTAAAGTAGTCCTGTATCAGGAAAGTGGCATAGAA,3' UTR,14,30039939,30082758,42820,2,Cacna1d-212,16617,Cacna1d-212;Cacna1d-202;Cacna1d-201;Cacna1d-208;Cacna1d-209;Cacna1d-214;Cacna1d-204;Cacna1d-207;Cacna1d-218;Cacna1d-216,Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,13,26,12289,ENSMUSG00000015968,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17352,cg11007962,0.0000131,0.00000453,2.89574271,0.004051437,gain,ns,-0.00000655,0.00000769,-0.852018734,0.394861423,neg,ns,-0.004318128,0.002252257,-1.917245177,0.056125684,neg,ns,1.250838352,0.00013213,0.0000775,1.705892821,0.089029639,pos,ns,0.926519099,Agap1,Agap1_Exon,1,89823862,89823911,89823862,89823863,50,+,CGCAAAGCATGGAAACTAAACCGTGTTGGTAGCCTGCGAAATATATACAG,"Exon (Agap1-205/Agap1, exon 2 of 3)",1,89454806,89897617,442812,1,Agap1-201,369056,Agap1-201;Agap1-204;Agap1-202;Agap1-205,Agap1;Agap1;Agap1;Agap1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,29,347722,ENSMUSG00000055013,conserved gene and region,1,89823847,89824048,202,*,202,14,0.613861386,0.788182832,0.069306931,7.84E-09,CpGisland,TRUE,U11,Tr-P
5099,cg07239973,0.0000682,0.0000178,3.831297432,0.000154309,gain,ns,-0.0000258,0.0000302,-0.851934839,0.394907915,neg,ns,0.024082238,0.008862005,2.717470493,0.006948153,pos,ns,2.158130626,-0.000683834,0.000304764,-2.243818364,0.025549731,neg,ns,0.324463844,Plxna4,Plxna4_Intron,6,32315246,32315295,32315246,32315247,50,+,CGGGCTGTTTATTTACATCCATTGAAGGATTGAACAATAAATATAGTCTC,"Intron (Plxna4os3-201/Plxna4os3-201, intron 2 of 2)",6,32144268,32588192,443925,2,Plxna4-201,272897,Plxna4-201,Plxna4,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,9,243743,ENSMUSG00000029765,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22742,cg11822715,0.00000954,0.0000073,1.307114427,0.192142565,gain,ns,-0.0000106,0.0000124,-0.851933707,0.394908543,neg,ns,-0.004470016,0.003632929,-1.230416385,0.219474049,neg,ns,0.658616824,0.0000527,0.000124936,0.422109838,0.673237438,pos,ns,0.811567856,Meis2,Meis2_Intron,2,115897763,115897812,115897763,115897764,50,-,CGTTTGCCGCTGCTCATTAACAAACAATACTGCTGTGAAATTGGTTTAAT,"Intron (Meis2-201/Meis2, intron 9 of 11)",2,115863064,116065047,201984,2,Meis2-201,167235,Meis2-201;Meis2-203;Meis2-205;Meis2-206;Meis2-204;Meis2-202;Meis2-216,Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,45,97,17536,ENSMUSG00000027210,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23658,cg17050986,-0.0000117,0.00000409,-2.873233747,0.004343418,loss,ns,0.00000592,0.00000694,0.851840987,0.39495993,pos,ns,-0.000847938,0.00203431,-0.416818335,0.677099764,neg,ns,0.169347337,-0.0000288,0.00007,-0.411258524,0.681167142,neg,ns,0.857035735,Scn5a,Scn5a_Exon,9,119543331,119543380,119543379,119543380,50,+,AACTGAAATAGTTTTTAGAGCTCTCAGGACTCTGAAAGTTCGAAGAGCCG,"Exon (Scn5a-202/Scn5a, exon 6 of 28)",9,119483408,119562678,79271,2,Scn5a-201,19298,Scn5a-201;Scn5a-202;Scn5a-203,Scn5a;Scn5a;Scn5a,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,6,20271,ENSMUSG00000032511,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6428,cg08845156,-0.0000128,0.00000296,-4.313857383,0.0000216,loss,ns,0.00000429,0.00000504,0.851781199,0.394993067,pos,ns,0.001290841,0.001475288,0.874975317,0.382264729,pos,ns,0.417635771,-0.0000786,0.0000507,-1.550063431,0.12214656,neg,ns,0.930471361,Tmem218,Tmem218_Intergenic_upstream,9,37197206,37197255,37197254,37197255,50,-,ATATGGTGCTTAAGTTGGAAATGGCGTTAAATTGCTCTCTCCTTGAGGCG,Distal Intergenic,9,37208223,37224700,16478,1,Tmem218-201,-11017,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,5,66279,ENSMUSG00000032121,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12818,cg24630153,-0.000000268,0.00000115,-0.233230962,0.815735991,loss,ns,-0.00000166,0.00000195,-0.851651283,0.395065079,neg,ns,-0.001101249,0.000571283,-1.92767702,0.05480869,neg,ns,1.261150578,0.0000361,0.0000196,1.836039027,0.067309467,pos,ns,0.034446887,Tmem33,Tmem33_Intergenic_upstream,5,67231708,67231757,67231756,67231757,50,+,CATTTTATACATGATGAGCCGTCAGTAATAGGATTATTAAACAAAAACCG,Distal Intergenic,5,67260565,67291461,30897,1,Tmem33-201,-28808,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,22,22,67878,ENSMUSG00000037720,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
22664,cg20757950,-0.00000106,0.000000652,-1.622498872,0.105713072,loss,ns,0.000000943,0.00000111,0.851640412,0.395071106,pos,ns,0.000143903,0.000324496,0.443466478,0.657737703,pos,ns,0.181947263,-0.00000299,0.0000112,-0.268029344,0.788854988,neg,ns,0.978573338,BC052040,BC052040_Intron,2,115643931,115643980,115643931,115643932,50,+,CGCCATTTGTCAAAGTCAACCTTCTGATTGCTTTGGACCTACTGCTATCC,"Intron (BC052040-203/BC052040, intron 5 of 10)",2,115581716,115778768,197053,1,BC052040-203,62215,BC052040-203;BC052040-201;BC052040-202,BC052040;BC052040;BC052040,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,37,49,399568,ENSMUSG00000040282,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14828,cg08836210,0.0000271,0.00000437,6.197218294,1.83E-09,gain,yes,-0.00000632,0.00000743,-0.851627985,0.395077994,neg,ns,-0.000676707,0.00217545,-0.311065517,0.75595988,neg,ns,0.121501253,0.0000894,0.0000748,1.194621937,0.233147978,pos,ns,0.922390965,Fam172a,Fam172a_Intron,13,77893044,77893093,77893044,77893045,50,+,CGGTTAAAATCTTTTGTTTGGTTAATTGCAATGAGTATAATATACAAGTC,"Intron (Fam172a-203/Fam172a, intron 6 of 10)",13,77708690,78163655,454966,1,Fam172a-203,184354,Fam172a-203;Fam172a-201;Fam172a-202;Fam172a-209;Fam172a-205;Fam172a-207;Fam172a-208,Fam172a;Fam172a;Fam172a;Fam172a;Fam172a;Fam172a;Fam172a,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,24,68675,ENSMUSG00000064138,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3964,cg18121961,0.00000115,0.00000588,0.195868704,0.844841261,gain,ns,0.00000851,0.00000999,0.851582846,0.395103017,pos,ns,0.000285196,0.002928129,0.097398635,0.92247277,pos,ns,0.035046445,0.00000559,0.000100698,0.055549224,0.9557367,pos,ns,0.92481182,Gm7847,Gm7847_Intergenic_upstream,18,25999405,25999454,25999405,25999406,50,-,CGTTCTAGTCGCTGGAAAATGGGTTTGACTACCAATTTTCCATTACAGCT,Distal Intergenic,18,25823581,25824357,777,2,Gm7847-201,-175097,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,22,665916,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26711,cg01534197,0.000000947,0.00000248,0.381861665,0.702825601,gain,ns,0.00000359,0.00000421,0.851483049,0.395158343,pos,ns,0.001510401,0.001234686,1.223307415,0.222142678,pos,ns,0.653367997,-0.0000268,0.0000425,-0.630295067,0.528965883,neg,ns,0.946346696,Camta1,Camta1_Intron,4,151639970,151640019,151639970,151639971,50,+,CGACACAGTTCAATGCAAAATCAGATATAAATCTAGCTTAAGAGACTCTC,"Intron (Camta1-211/Camta1, intron 3 of 24)",4,150917322,151861669,944348,2,Camta1-211,221650,Camta1-211;Camta1-202;Camta1-201;Camta1-210,Camta1;Camta1;Camta1;Camta1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,22,100072,ENSMUSG00000014592,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20091,cg17670290,0.0000593,0.0000133,4.47090277,0.0000109,gain,ns,-0.0000192,0.0000225,-0.851479801,0.395160144,neg,ns,0.020351247,0.006601618,3.082766644,0.002235163,pos,ns,2.650690851,-0.000420443,0.000227029,-1.851933756,0.064985969,neg,ns,0.096139384,Pde4b,Pde4b_Intron,4,102511092,102511141,102511092,102511093,50,-,CGTCAATGGAGTCATTAAATAGATTGCTGGCCCTCCCAGAGGCAAATCGC,"Intron (Pde4b-208/Pde4b, intron 7 of 16)",4,102087543,102605833,518291,1,Pde4b-208,423549,Pde4b-208;Pde4b-212;Pde4b-206;Pde4b-207;Pde4b-205;Pde4b-210,Pde4b;Pde4b;Pde4b;Pde4b;Pde4b;Pde4b,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,18578,ENSMUSG00000028525,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9343,cg06710602,0.0000394,0.00000899,4.385718062,0.0000159,gain,ns,-0.000013,0.0000153,-0.85146133,0.395170384,neg,ns,0.006878503,0.004472355,1.538004567,0.125067541,pos,ns,0.902855388,-0.000262183,0.000153804,-1.704660387,0.089259683,neg,ns,0.048418088,Id4,Id4_Exon,13,48261745,48261794,48261745,48261746,50,+,CGCCCAACAAGAAAGTCAGCAAAGTGGAGATCCTGCAGCACGTTATCGAC,Promoter (<=1kb),13,48261228,48266026,4799,1,Id4-201,517,Id4-201,Id4,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,9,15904,ENSMUSG00000021379,conserved gene and region,13,48261348,48262602,1255,*,1255,121,0.674103586,0.848693329,0.096414343,1.80E-89,CpGisland,TRUE,NA,NRS
8787,cg11680495,0.00000735,0.00000346,2.125640167,0.034323552,gain,ns,-0.000005,0.00000588,-0.851397099,0.395205996,neg,ns,0.002041069,0.001721595,1.185568637,0.236700662,pos,ns,0.625800528,-0.0000777,0.0000592,-1.312124524,0.190448872,neg,ns,0.940126393,Dscaml1,Dscaml1_threeUTR,9,45753636,45753685,45753684,45753685,50,+,TTGCAGATGCTTATGTGTTAATACCTTTTTCTATGAAAAAAGACCCAGCG,3' UTR,9,45430291,45753712,323422,1,Dscaml1-201,323345,Dscaml1-211;Dscaml1-201;Dscaml1-210;Dscaml1-203,Dscaml1;Dscaml1;Dscaml1;Dscaml1,0;0;0;2937,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,32,114873,ENSMUSG00000032087,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4198,cg01716698,-0.00000711,0.00000173,-4.107352335,0.0000513,loss,ns,0.0000025,0.00000294,0.851163786,0.395335369,pos,ns,0.001413972,0.000861659,1.640987366,0.10181419,pos,ns,0.992191691,-0.0000395,0.0000296,-1.333224643,0.18343699,neg,ns,0.06511868,Ank,Ank_fiveUTR,15,27466996,27467045,27466996,27466997,50,+,CGGGGACTATGGTGAAATTCCCGGCGCTCACGCACTACTGGCCCCTGATC,Promoter (<=1kb),15,27466677,27594909,128233,1,Ank-201,319,Ank-201,Ank,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,1,11732,ENSMUSG00000022265,conserved gene and region,15,27466013,27467326,1314,*,1314,149,0.684170472,0.976537483,0.113394216,1.51E-121,CpGisland,TRUE,U1,Pr-A
15911,cg12896132,0.000011,0.00000671,1.6425936,0.101480967,gain,ns,-0.0000097,0.0000114,-0.851092651,0.395374819,neg,ns,-0.008166145,0.003338043,-2.446387079,0.014984972,neg,ns,1.824344051,0.000184592,0.000114795,1.608014007,0.108850058,pos,ns,0.849159313,Cbx3-ps3,Cbx3-ps3_Intergenic_downstream,4,83865436,83865485,83865436,83865437,50,+,CGAGATGTCGGGGAGCTGACAAGATGCCCCAGTGACATTTCAGCTAGAAA,Distal Intergenic,4,83701084,83702036,953,1,Cbx3-ps3-201,164352,Ccdc171-201;Ccdc171-206;Ccdc171-203,Ccdc171;Ccdc171;Ccdc171,0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,4,102641235,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23986,cg08352417,-0.0000649,0.0000111,-5.829992639,1.39E-08,loss,yes,0.0000161,0.0000189,0.850955826,0.395450705,pos,ns,0.003426375,0.005542762,0.618171009,0.536916512,pos,ns,0.27009324,-0.000218895,0.000190615,-1.148363673,0.251703812,neg,ns,0.71038158,Dock9,Dock9_Exon,14,121738374,121738423,121738422,121738423,50,+,TCTCCTTGCTGTTTGCACATATAAGCACAGTTTCTTTCAAAAACGGTGCG,Promoter (<=1kb),14,121542046,121738861,196816,2,Dock9-208,438,Dock9-208;Dock9-212;Dock9-202,Dock9;Dock9;Dock9,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,4,105445,ENSMUSG00000025558,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13935,cg22284452,-0.0000157,0.00000665,-2.367538287,0.018520583,loss,ns,-0.00000961,0.0000113,-0.850922932,0.395468951,neg,ns,0.005350404,0.003308042,1.61739288,0.10681055,pos,ns,0.97138585,-0.000361946,0.000113763,-3.181573473,0.001613177,neg,ns,0.867477115,Dcun1d4,Dcun1d4_Exon,5,73555371,73555420,73555371,73555372,50,+,CGCAGCCTAGACATAAACACTGCCAAGTGCATGTTGGGACTGTTATTAGG,"Exon (Dcun1d4-202/Dcun1d4, exon 10 of 12)",5,73481000,73560794,79795,1,Dcun1d4-202,74371,Dcun1d4-202;Dcun1d4-204;Dcun1d4-203;Dcun1d4-201,Dcun1d4;Dcun1d4;Dcun1d4;Dcun1d4,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,3,100737,ENSMUSG00000051674,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24661,cg08694560,-0.0000587,0.0000264,-2.22922742,0.026515125,loss,ns,-0.0000381,0.0000448,-0.850824016,0.395523819,neg,ns,0.049259692,0.013115802,3.755751354,0.000206388,pos,ns,3.685316006,-0.001678186,0.000451051,-3.720609206,0.000235907,neg,ns,0.816566218,Ndufa4l2,Ndufa4l2_threeUTR,10,127517114,127517163,127517162,127517163,50,+,AGCAGCCGTGGGCAAAATACAATTTCATTTAACAAATTGAATTTGCTGCG,3' UTR,10,127514967,127517154,2188,1,Ndufa4l2-201,2147,Ndufa4l2-203;Ndufa4l2-202;Ndufa4l2-201;Shmt2-206;Shmt2-201;Shmt2-207;Shmt2-203;Shmt2-204;Shmt2-205;Shmt2-202,Ndufa4l2;Ndufa4l2;Ndufa4l2;Shmt2;Shmt2;Shmt2;Shmt2;Shmt2;Shmt2;Shmt2,2147;2147;0;0;0;1613;1617;5239;5238;5201,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,3,407790,ENSMUSG00000040280,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
11736,cg17523528,-0.00000529,0.00000448,-1.181167946,0.238441396,loss,ns,0.00000648,0.00000761,0.85069348,0.395596234,pos,ns,-0.00120448,0.002229945,-0.540138728,0.589489178,neg,ns,0.229524163,-0.000133725,0.0000767,-1.743758161,0.082192557,neg,ns,0.892330678,Cdh23,Cdh23_Exon,10,60304475,60304524,60304523,60304524,50,+,AAAGAGCTTTTTGAGCCGCAGGTAATCCTCCAGGACCACCTTCAGCAGCG,"Exon (Cdh23-201/Cdh23, exon 66 of 67)",10,60302748,60657333,354586,2,Cdh23-201,352809,Cdh23-201;Cdh23-203;Cdh23-202;Cdh23-204;Cdh23-205;Cdh23-212;Cdh23-214;Cdh23-209;Cdh23-210;Cdh23-216;Psap-202;Psap-201;Psap-204;Psap-205;Psap-203,Cdh23;Cdh23;Cdh23;Cdh23;Cdh23;Cdh23;Cdh23;Cdh23;Cdh23;Cdh23;Psap;Psap;Psap;Psap;Psap,0;0;0;0;0;0;0;0;0;0;26848;26847;26847;26847;20014,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,14,22295,ENSMUSG00000012819,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4656,cg16898005,0.0000302,0.00000764,3.948442267,0.0000974,gain,ns,-0.000011,0.000013,-0.850547111,0.395677442,neg,ns,0.002295392,0.003802443,0.60366243,0.546509552,pos,ns,0.262402243,-0.000395238,0.000130766,-3.02249256,0.002716146,neg,ns,0.751703033,Cacna1d,Cacna1d_threeUTR,14,30066102,30066151,30066150,30066151,50,-,ATTTCCTAAAGTAGTCCTGTATCAGGAAAGTGGCATAGAACTTCCCCACG,3' UTR,14,30039939,30082758,42820,2,Cacna1d-212,16607,Cacna1d-212;Cacna1d-202;Cacna1d-201;Cacna1d-208;Cacna1d-209;Cacna1d-214;Cacna1d-204;Cacna1d-207;Cacna1d-218;Cacna1d-216,Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,13,26,12289,ENSMUSG00000015968,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13360,cg01153890,-0.000105744,0.0000154,-6.869645569,3.53E-11,loss,yes,0.0000222,0.0000262,0.850515183,0.395695157,pos,ns,-0.019465099,0.00766123,-2.54072775,0.011549629,neg,ns,1.937431977,0.000527124,0.000263469,2.00070409,0.046296004,pos,ns,0.855638911,Nr2f2,Nr2f2_Intergenic_downstream,7,70344319,70344368,70344319,70344320,50,+,CGCAAAATTATGTTTAATGTTGCAAGGGGGAAAGGGGAAATATAAAATTA,Distal Intergenic,7,70353074,70355237,2164,2,Nr2f2-203,10869,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,19,69,11819,ENSMUSG00000030551,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
30,cg22036407,-0.00000647,0.0000066,-0.980178216,0.327762476,loss,ns,0.00000954,0.0000112,0.850420149,0.39574789,pos,ns,0.008642232,0.003286098,2.629937606,0.00896625,pos,ns,2.047389155,-0.000403721,0.000113009,-3.572477287,0.000409841,neg,ns,0.857285615,Ppp6r3,Ppp6r3_Exon,19,3478308,3478357,3478308,3478309,50,-,CGTTTCTTTAAAGTCAATTTCATCATCACTGGATGAATGAATATGGCAGG,"Exon (Ppp6r3-202/Ppp6r3, exon 15 of 24)",19,3454928,3575720,120793,2,Ppp6r3-201,97363,Ppp6r3-201;Ppp6r3-203;Ppp6r3-202;Ppp6r3-208;Ppp6r3-204,Ppp6r3;Ppp6r3;Ppp6r3;Ppp6r3;Ppp6r3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,52036,ENSMUSG00000024908,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19771,cg14545634,0.00000224,0.00000437,0.512944445,0.608355505,gain,ns,0.00000632,0.00000743,0.850400218,0.39575895,pos,ns,0.00614098,0.002175786,2.822419389,0.005074288,pos,ns,2.294624905,-0.000149039,0.0000748,-1.991836532,0.047266038,neg,ns,0.909164298,Scn8a,Scn8a_threeUTR,15,101045859,101045908,101045907,101045908,50,+,ACTTTGTACTGTACATCTTTTTACTTTAGAATTTGCAATAAAGGGTTACG,3' UTR,15,100870683,101045929,175247,1,Scn8a-201,175176,Fignl2-201;Fignl2-202;Scn8a-201;Scn8a-204;Scn8a-213;Scn8a-203;Scn8a-205;Tmdd1-201,Fignl2;Fignl2;Scn8a;Scn8a;Scn8a;Scn8a;Scn8a;Tmdd1,0;0;0;0;0;0;0;1489,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,24,20273,ENSMUSG00000023033,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
26032,cg12786585,-0.00000119,0.00000273,-0.4359773,0.663156642,loss,ns,-0.00000394,0.00000464,-0.850383423,0.39576827,neg,ns,-0.000061,0.001358216,-0.044925922,0.96419528,neg,ns,0.015834999,-0.0000193,0.0000467,-0.413926554,0.679214126,neg,ns,0.905660601,Kcnq1,Kcnq1_Intron,7,143305853,143305902,143305901,143305902,50,+,GCCTTATAAACTCCGTGTGCAAATTACCTTTGGGGCTGCCTGCTCCACCG,"Intron (Kcnq1-201/Kcnq1, intron 11 of 15)",7,143107254,143427042,319789,1,Kcnq1-201,198599,Kcnq1-201;Kcnq1-202,Kcnq1;Kcnq1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,9,16535,ENSMUSG00000009545,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14273,cg18418523,-0.0000163,0.00000911,-1.79030755,0.074380231,loss,ns,0.0000132,0.0000155,0.850230198,0.395853304,pos,ns,0.000220024,0.004533774,0.048530006,0.961325102,pos,ns,0.017129717,-0.0000762,0.000155916,-0.48865783,0.625429467,neg,ns,0.770042435,Nhej1,Nhej1_Intron,1,75030153,75030202,75030201,75030202,50,+,GAGTTGGCGGCCAGGTTATCAGGCAATAACAAACTCAGCATCCAAGCACG,"Intron (Nhej1-201/Nhej1, intron 2 of 4)",1,74967139,75046639,79501,2,Nhej1-201,16437,Nhej1-201,Nhej1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,5,75570,ENSMUSG00000026162,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14180,cg09965605,0.0000368,0.00000431,8.535732446,6.32E-16,gain,yes,-0.00000622,0.00000732,-0.850138363,0.395904275,neg,ns,0.008398709,0.002144728,3.915978318,0.000110771,pos,ns,3.955573453,-0.000186124,0.0000738,-2.523480932,0.012119574,neg,ns,0.07533815,Gm28230,Gm28230_fiveUTR,2,74732919,74732968,74732919,74732920,50,+,CGTCATTAATCTGCCACGCAAAGGGCTCTCTCCGACTTGGAAAGTGCAGG,5' UTR,2,74726728,74747918,21191,1,Gm28230-201,6191,Gm28230-201;Hoxd3-203;Hoxd3-205;Hoxd3-202;Hoxd4-203;Hoxd4-201;Hoxd4-202,Gm28230;Hoxd3;Hoxd3;Hoxd3;Hoxd4;Hoxd4;Hoxd4,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,23,,NA,mapped to different genes,2,74732626,74733055,430,*,430,35,0.590697674,0.938923202,0.081395349,1.14E-23,CpGisland,TRUE,U13,Hc-P
23022,cg06606510,-0.0000364,0.0000117,-3.105567008,0.002074646,loss,ns,0.0000169,0.0000199,0.850135636,0.395905789,pos,ns,0.007442468,0.005834071,1.27569025,0.203020101,pos,ns,0.692460961,-0.00025274,0.000200633,-1.25970939,0.208721772,neg,ns,0.564018123,Mgat5b,Mgat5b_Promoter,11,116913669,116913718,116913669,116913670,50,+,CGCTGCCTTTCAATCAGAGGATTAGTCTAAATGTTGTGAAACAGAAAGCA,Promoter (5-6kb),11,116918863,116986948,68086,1,Mgat5b-201,-5145,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,3,268510,ENSMUSG00000043857,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21853,cg13230014,0.0000258,0.00000891,2.898953397,0.004011279,gain,ns,0.0000129,0.0000151,0.850081638,0.39593576,pos,ns,0.009646116,0.004432708,2.176122729,0.03030088,pos,ns,1.518544756,-0.000134971,0.00015244,-0.885402527,0.37662583,neg,ns,0.798230972,Gm1943,Gm1943_Exon,8,109251623,109251672,109251671,109251672,50,+,ATTTTAAAAGCCGAAGAATTACAGTTAACTTTTCCCACAGGGTACAGACG,"Exon (D030068K23Rik-202/D030068K23Rik-202, exon 10 of 10)",8,109340691,109340864,174,2,Gm1943-201,89192,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,28,384864,NA,mapped to different genes,8,109251360,109251796,437,*,437,24,0.544622426,0.749571184,0.054919909,1.62E-12,CpGisland,TRUE,U15,NS
9110,cg08307607,0.00000488,0.00000725,0.672702847,0.501637477,gain,ns,0.0000105,0.0000123,0.85002892,0.395965023,pos,ns,0.003964258,0.003606916,1.09907116,0.272589855,pos,ns,0.564490311,-0.00011672,0.000124042,-0.940971152,0.3474523,neg,ns,0.862645675,Gm4791,Gm4791_Intergenic_upstream,9,46899641,46899690,46899689,46899690,50,-,TCATTTTAATAGTAGCATCATATAAATAAAACACCATTACAAAAATGTCG,Distal Intergenic,9,46998741,47003860,5120,1,Gm4791-201,-99100,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,9,18,215467,ENSMUSG00000094893,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14361,cg20610710,0.00000121,0.00000275,0.439698054,0.660462182,gain,ns,0.00000396,0.00000466,0.84995214,0.396007645,pos,ns,-0.000919734,0.001366413,-0.673101414,0.501384243,neg,ns,0.299829319,0.0000386,0.000047,0.822241984,0.411571167,pos,ns,0.049513516,Smad7,Smad7_Exon,18,75369471,75369520,75369519,75369520,50,+,GGAAGTCAAGAGGCTGTGTTGCTGTGAATCTTACGGGAAGATCAACCCCG,"Exon (Smad7-201/Smad7, exon 1 of 4)",18,75367529,75395935,28407,1,Smad7-201,1942,Smad7-201;Smad7-202;Smad7-205;Smad7-204,Smad7;Smad7;Smad7;Smad7,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,19,17131,ENSMUSG00000025880,conserved gene and region,18,75368486,75369554,1069,*,1069,115,0.705332086,0.865343329,0.107577175,4.83E-91,CpGisland,TRUE,U1,Pr-A
8762,cg25332734,-0.0000117,0.00000641,-1.82551604,0.068885199,loss,ns,0.00000925,0.0000109,0.849897349,0.396038062,pos,ns,0.004031705,0.003189375,1.264105316,0.207141887,pos,ns,0.683732071,-0.000167042,0.000109682,-1.522958652,0.12878847,neg,ns,0.891521065,Dscaml1,Dscaml1_Intron,9,45720241,45720290,45720241,45720242,50,-,CGATCTGTATTAGTTTATTACACTGGGTCCCTAATTACATGGTGCTTATA,"Intron (Dscaml1-211/Dscaml1, intron 17 of 32)",9,45430291,45753262,322972,1,Dscaml1-211,289950,Dscaml1-211;Dscaml1-201;Dscaml1-210;Dscaml1-207,Dscaml1;Dscaml1;Dscaml1;Dscaml1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,32,114873,ENSMUSG00000032087,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27839,cg21877430,-0.00000108,0.00000297,-0.364554797,0.715692315,loss,ns,-0.00000429,0.00000505,-0.84964161,0.396180053,neg,ns,-0.002871744,0.001479666,-1.940805508,0.053188147,neg,ns,1.274185141,0.000137472,0.0000509,2.701598332,0.00728047,pos,ns,0.928708408,Esrrg,Esrrg_Intron,1,188196328,188196377,188196328,188196329,50,-,CGTAAAAGTGCTGGCCCTGATAAAATCGTGGATGGACCTCAATAAAAAAG,"Intron (Esrrg-203/Esrrg, intron 6 of 7)",1,187609029,188214386,605358,1,Esrrg-203,587299,Esrrg-203;Esrrg-201;Esrrg-202,Esrrg;Esrrg;Esrrg,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,60,26381,ENSMUSG00000026610,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25198,cg22539495,0.0000148,0.00000624,2.365082729,0.018641588,gain,ns,0.000009,0.0000106,0.849401197,0.396313562,pos,ns,0.012021599,0.003105216,3.871421657,0.000131975,pos,ns,3.879506841,-0.000445847,0.000106788,-4.175063887,0.0000388,neg,ns,0.440498674,Pcdh19,Pcdh19_Exon,X,133682156,133682205,133682204,133682205,50,-,CCGAGATGCAATGCAGACACTTGCTGTTTTGTCCTTTTATAAAACAGCCG,"Exon (Pcdh19-202/Pcdh19, exon 2 of 6)",20,133582860,133688987,106128,2,Pcdh19-202,6782,Pcdh19-202;Pcdh19-203;Pcdh19-201;Pcdh19-205,Pcdh19;Pcdh19;Pcdh19;Pcdh19,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,8,279653,ENSMUSG00000051323,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11227,cg19573828,0.00000675,0.00000443,1.522346661,0.128941628,gain,ns,0.0000064,0.00000753,0.849396261,0.396316303,pos,ns,-0.003804825,0.002205989,-1.724770416,0.085565583,neg,ns,1.067700885,0.0000302,0.0000759,0.398667964,0.690412335,pos,ns,0.825147234,Satb2,Satb2_Intergenic_upstream,1,57083304,57083353,57083304,57083305,50,+,CGGTGGTTTGCTGCTGCGTGATTCACAGATATGATTGCATCTAATTTCAG,Distal Intergenic,1,56969740,56978650,8911,2,Satb2-204,-104654,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,33,212712,ENSMUSG00000038331,mapped to different genes,1,57083151,57083321,171,*,171,10,0.532163743,0.855855856,0.058479532,0.00000878,CpGisland,TRUE,U15,NS
10958,cg25125621,-0.0000206,0.00000652,-3.159736713,0.001734957,loss,ns,-0.0000094,0.0000111,-0.849300332,0.396369584,neg,ns,-0.011090323,0.003243405,-3.419345748,0.000711718,neg,ns,3.147691779,0.000253326,0.00011154,2.271157728,0.02382289,pos,ns,0.885197714,Tcf7l2,Tcf7l2_Intron,19,55914934,55914983,55914934,55914935,50,-,CGTGGCTCACAAAAAATAAGGCAGGAAGAGATGAAATGTTACAAGTGCAA,"Intron (Tcf7l2-213/Tcf7l2, intron 7 of 13)",19,55741820,55933229,191410,1,Tcf7l2-213,173114,Tcf7l2-213;Tcf7l2-201;Tcf7l2-208;Tcf7l2-211;Tcf7l2-212;Tcf7l2-206;Tcf7l2-204;Tcf7l2-205;Tcf7l2-222;Tcf7l2-215;Tcf7l2-214;Tcf7l2-207;Tcf7l2-202;Tcf7l2-209;Tcf7l2-210;Tcf7l2-217;Tcf7l2-220;Tcf7l2-218;Tcf7l2-203;Tcf7l2-216;Tcf7l2-219;Tcf7l2-221,Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,55,88,21416,ENSMUSG00000024985,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14287,cg25061576,0.000142464,0.00000953,14.94838505,2.01E-38,gain,yes,-0.0000137,0.0000162,-0.849184978,0.39643366,neg,ns,0.019340256,0.004743377,4.07731761,0.000058,pos,ns,4.236854256,-0.000178927,0.000163124,-1.096874101,0.273547745,neg,ns,0.297491283,Gsx2,Gsx2_Promoter,5,75071938,75071987,75071986,75071987,50,-,ATACAAGTTAACGATGCACTTTCAATAAAACATTCATAGACTTGTTCACG,Promoter (3-4kb),5,75075601,75077893,2293,1,Gsx2-201,-3663,Gsx2-201;Gsx2-202,Gsx2;Gsx2,-3614;-3615,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,5,10,14843,ENSMUSG00000035946,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
20412,cg05001302,0.0000239,0.00000533,4.487714142,0.0000102,gain,ns,-0.0000077,0.00000906,-0.84912282,0.396468189,neg,ns,-0.007136882,0.002655143,-2.687945952,0.007577703,neg,ns,2.120462414,0.0003936,0.0000913,4.310579626,0.0000219,pos,ns,0.094767434,Hoxc4,Hoxc4_Exon,15,103034736,103034785,103034736,103034737,50,+,CGTATTTGATGGACTCTAACTACATCGATCCGAAATTTCCTCCATGCGAA,"Exon (Hoxc4-202/Hoxc4, exon 2 of 4)",15,103018934,103036405,17472,1,Hoxc4-202,15802,Hoxc4-202;Hoxc4-201,Hoxc4;Hoxc4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,91,15423,ENSMUSG00000075394,conserved gene and region,15,103034736,103035107,372,*,372,27,0.626344086,0.794494542,0.072580645,4.60E-17,CpGisland,TRUE,U3,Pr-B
4467,cg09119523,-0.00000305,0.00000156,-1.959673052,0.050929775,loss,ns,0.00000225,0.00000265,0.849097381,0.396482321,pos,ns,0.001717403,0.000775295,2.215160657,0.027475658,pos,ns,1.561051902,-0.0000466,0.0000267,-1.745971979,0.08180644,neg,ns,0.071736439,4430402I18Rik,4430402I18Rik_Exon,19,28964480,28964529,28964480,28964481,50,-,CGAGGTGCTGATGAACCTGCTCTTCGCCCTGCTGTTGGACCTGCTGCTGG,"Exon (Plpp6-201/Plpp6, exon 1 of 1)",19,28901268,28967730,66463,2,4430402I18Rik-207,3201,4430402I18Rik-207;4430402I18Rik-201;4430402I18Rik-205;4430402I18Rik-203;4430402I18Rik-206;4430402I18Rik-204;Plpp6-201,4430402I18Rik;4430402I18Rik;4430402I18Rik;4430402I18Rik;4430402I18Rik;4430402I18Rik;Plpp6,0;-326;0;-893;-893;-572;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,381218,ENSMUSG00000064202,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6086,cg23109591,0.00000187,0.00000131,1.430562024,0.153562966,gain,ns,0.00000189,0.00000222,0.848916768,0.396582665,pos,ns,0.00022153,0.00065109,0.340245049,0.733902433,pos,ns,0.134361673,0.0000293,0.0000224,1.307276963,0.192087444,pos,ns,0.023363757,Ttll11,Ttll11_Intergenic_upstream,2,36011572,36011621,36011572,36011573,50,+,CGCCGCCGCACTATAATTTTCCAAACAGGATCTTGCAATCAGGGCCTTAT,Distal Intergenic,2,35902351,35979913,77563,2,Ttll11-203,-31659,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,7,74410,ENSMUSG00000026885,mapped to different genes,2,36011338,36011579,242,*,242,25,0.669421488,0.936387556,0.103305785,1.00E-19,CpGisland,TRUE,U3,Pr-B
4742,cg16403027,-0.00000527,0.00000199,-2.648547631,0.008497728,loss,ns,-0.00000287,0.00000338,-0.848901057,0.396591395,neg,ns,-0.001674893,0.00099035,-1.691214073,0.091800941,neg,ns,1.037152868,0.0000308,0.0000341,0.903213193,0.367114055,pos,ns,0.967480897,Mecom,Mecom_Intron,3,30411711,30411760,30411711,30411712,50,-,CGTCATGGCTAATCCCTTGAGCTGACCTACAGATGAATTATGGAGGTTTT,"Intron (Mecom-212/Mecom, intron 1 of 15)",3,29951299,30509733,558435,2,Mecom-212,97973,Mecom-212;Mecom-213;Mecom-207;Mecom-208;Mecom-211;Mecom-209,Mecom;Mecom;Mecom;Mecom;Mecom;Mecom,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,80,14013,ENSMUSG00000027684,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19366,cg05850693,0.00000552,0.00000564,0.980103064,0.327799508,gain,ns,0.00000813,0.00000958,0.848891907,0.396596479,pos,ns,-0.002851362,0.00280516,-1.016470258,0.310198155,neg,ns,0.508360789,-0.0000731,0.0000965,-0.757272255,0.449461969,neg,ns,0.854756485,Gm12441,Gm12441_Intergenic_upstream,3,99111326,99111375,99111326,99111327,50,-,CGTTCACACCAGGCCTTGAGAGAATATTAACAAGGTTACCCAAGGGGGGG,Distal Intergenic,3,99100567,99101154,588,2,Gm12441-201,-10221,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,102631982,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12637,cg13026235,-0.00000666,0.00000215,-3.098227179,0.002125121,loss,ns,0.0000031,0.00000365,0.848787259,0.396654627,pos,ns,0.004726335,0.001070325,4.41579292,0.0000139,pos,ns,4.856394365,-0.000108071,0.0000368,-2.936041441,0.003573023,neg,ns,0.949645831,Ptk2b,Ptk2b_Exon,14,66177717,66177766,66177717,66177718,50,-,CGGATCCCTTTAGGGCCAATGACCAGGTCCACAGTAATGTTCCATCCTTG,"Exon (Ptk2b-201/Ptk2b, exon 9 of 31)",14,66153257,66281052,127796,2,Ptk2b-201,103286,Ptk2b-201;Ptk2b-208;Ptk2b-202;Ptk2b-203;Ptk2b-204,Ptk2b;Ptk2b;Ptk2b;Ptk2b;Ptk2b,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,19229,ENSMUSG00000059456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10305,cg27208859,-0.0000215,0.0000116,-1.854323963,0.064642386,loss,ns,0.0000167,0.0000197,0.848545729,0.396788854,pos,ns,-0.0000895,0.00577427,-0.015506182,0.987638328,neg,ns,0.005402065,0.00000788,0.000198577,0.03969848,0.968359068,pos,ns,0.758883805,Gpc3,Gpc3_Intergenic_upstream,X,52627685,52627734,52627685,52627686,50,+,CGACATGAAAAGGGTTATTTTCAAAGGGCCTTGTGTGTGCATAAACAACC,Distal Intergenic,20,52387664,52613950,226287,2,Gpc3-202,-13735,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,7,14734,ENSMUSG00000055653,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20333,cg05139542,0.000114087,0.0000112,10.19191382,3.15E-21,gain,yes,0.0000161,0.000019,0.848503685,0.396812223,pos,ns,0.023064675,0.005571306,4.139904721,0.0000448,pos,ns,4.348422102,-0.000566688,0.000191597,-2.957713947,0.003337645,neg,ns,0.364759155,Hoxc5,Hoxc5_Intron,15,103008009,103008058,103008057,103008058,50,+,TCTCAGCATAGTCCCGTTTATGGCTTTATTGCTACCCATTGATTACTCCG,"Intron (Hoxc5-202/Hoxc5, intron 1 of 1)",15,102967443,103015676,48234,1,Hoxc5-202,40566,Hoxc5-202;Hoxc6-202;Hoxc6-203;Hoxc6-201,Hoxc5;Hoxc6;Hoxc6;Hoxc6,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,46,134,15424,ENSMUSG00000022485,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
6022,cg20578837,-0.0000249,0.00000427,-5.835541546,1.35E-08,loss,yes,0.00000616,0.00000726,0.848454898,0.39683934,pos,ns,0.000852607,0.002125777,0.401079976,0.688637555,pos,ns,0.162009297,-0.0000182,0.0000731,-0.248734286,0.803731031,neg,ns,0.954763849,Cxxc5,Cxxc5_Exon,18,35859382,35859431,35859382,35859383,50,-,CGAAAGACTGGCCATCAGATTTGCAAATTCAGAAAATGTGAGGAACTCAA,"Exon (Cxxc5-201/Cxxc5, exon 2 of 3)",18,35829788,35861688,31901,1,Cxxc5-201,29594,Cxxc5-202;Cxxc5-201;Cxxc5-206;Cxxc5-203;Cxxc5-204;Cxxc5-205,Cxxc5;Cxxc5;Cxxc5;Cxxc5;Cxxc5;Cxxc5,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,Exon,8,49,67393,ENSMUSG00000046668,conserved gene and region,18,35859255,35859383,129,*,129,10,0.627906977,0.792383292,0.07751938,0.000000711,CpGisland,TRUE,U10,Tr-S
6003,cg23423329,-0.0000433,0.00000747,-5.794308282,1.69E-08,loss,yes,0.0000108,0.0000127,0.848276915,0.396938277,pos,ns,0.000605837,0.003717905,0.16295105,0.870663148,pos,ns,0.060149837,0.0000677,0.000127858,0.529433135,0.596883941,pos,ns,0.857421079,Flot1,Flot1_Exon,17,35824331,35824380,35824331,35824332,50,+,CGCCATGGGGTCCCCATCTCAGTCACTGGCATTGCCCAGGTGAAGCTTTC,"Exon (Flot1-201/Flot1, exon 4 of 13)",17,35823230,35832791,9562,1,Flot1-201,1101,Flot1-201;Flot1-209;Flot1-208;Flot1-210;Flot1-207;Flot1-203;Flot1-202;Flot1-205;Ier3-201,Flot1;Flot1;Flot1;Flot1;Flot1;Flot1;Flot1;Flot1;Ier3,0;0;0;0;0;0;0;0;2647,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,14251,ENSMUSG00000059714,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5198,cg03565344,-0.0000437,0.00000837,-5.219544778,0.000000329,loss,yes,-0.0000121,0.0000142,-0.848194679,0.396983996,neg,ns,-0.014000216,0.004166792,-3.359950992,0.000877002,neg,ns,3.056999662,0.00023047,0.000143296,1.608350587,0.108776335,pos,ns,0.797949413,Ets1,Ets1_Exon,9,32711147,32711196,32711147,32711148,50,-,CGCCACTGTGTGTAAATGTGCTTGCTAATCCAGTGACTAATTCAGTATAT,"Exon (Gm27240-201/Gm27240-201, exon 1 of 3)",9,32636221,32729830,93610,1,Ets1-203,74926,Ets1-203;Ets1-207;Ets1-201;Ets1-202;Ets1-206;Ets1-205,Ets1;Ets1;Ets1;Ets1;Ets1;Ets1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,8,23871,ENSMUSG00000032035,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
3417,cg04327785,0.0000035,0.00000403,0.86999413,0.384976755,gain,ns,0.0000058,0.00000684,0.84812478,0.397022858,pos,ns,0.006337331,0.002004513,3.161532269,0.001724632,pos,ns,2.763303591,-0.000200441,0.0000689,-2.907687205,0.003903874,neg,ns,0.888760882,A830031A19Rik,A830031A19Rik_Intron,11,24072316,24072365,24072364,24072365,50,-,TCATTATAGCAGTGTCTGGCAGGGCTGCTATAATTAAGAGTCTGTCAGCG,"Intron (A830031A19Rik-201/A830031A19Rik, intron 1 of 2)",11,24048955,24075054,26100,2,A830031A19Rik-201,2689,A830031A19Rik-201,A830031A19Rik,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,23,268391,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
15833,cg16694303,-0.00000333,0.00000254,-1.30990811,0.191196776,loss,ns,0.00000366,0.00000432,0.848056578,0.397060779,pos,ns,0.000969174,0.001264625,0.766372906,0.44403763,pos,ns,0.352580224,-0.000052,0.0000435,-1.196554625,0.232394503,neg,ns,0.955025174,Gm7569,Gm7569_Exon,18,83633888,83633937,83633936,83633937,50,+,ATGATTTCTGTCAAAATCATCTTTACCACAATTATAATATGTTAATTACG,"Exon (Gm31621-203/Gm31621-203, exon 4 of 4)",18,83488012,83488522,511,2,Gm7569-201,-145366,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,4,665284,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4273,cg16313026,0.0000293,0.00000309,9.493747719,6.23E-19,gain,yes,-0.00000445,0.00000525,-0.848052668,0.397062953,neg,ns,0.002361513,0.001536713,1.53672984,0.125379486,pos,ns,0.901773516,-0.0000686,0.0000528,-1.297700446,0.195355072,neg,ns,0.055642245,En2,En2_fiveUTR,5,28165654,28165703,28165654,28165655,50,+,CGTCACTCGAGGGGGCTCTGTTAAAAATAAGAACAAAAATCCAGAGTGAA,Promoter (<=1kb),5,28165694,28172166,6473,1,En2-201,0,En2-201,En2,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,1,13799,ENSMUSG00000039095,conserved gene but different region,5,28165409,28165655,247,*,247,28,0.696356275,0.973125088,0.113360324,2.92E-23,CpGisland,TRUE,U3,Pr-B
11427,cg15629154,0.0000101,0.00000148,6.835383952,4.35E-11,gain,yes,0.00000213,0.00000251,0.847887407,0.397154849,pos,ns,0.000588557,0.000735475,0.800240612,0.424184222,pos,ns,0.372445489,0.0000428,0.0000253,1.691499981,0.091746305,pos,ns,0.034466842,Fgf9,Fgf9_fiveUTR,14,58073040,58073089,58073088,58073089,50,-,AAAGCCGAGTCCTCTGATGGCTCCCTTAGGTGAAGTTGGGAACTATTTCG,5' UTR,14,58070547,58112720,42174,1,Fgf9-203,2493,Fgf9-203;Fgf9-201;Fgf9-202;Fgf9-204,Fgf9;Fgf9;Fgf9;Fgf9,0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,8,14180,ENSMUSG00000021974,conserved gene but different region,14,58073088,58073243,156,*,156,14,0.641025641,0.902852418,0.08974359,2.46E-10,CpGisland,TRUE,U13,Hc-P
25508,cg17143801,-0.00000527,0.00000169,-3.109267384,0.00204962,loss,ns,-0.00000244,0.00000288,-0.847754256,0.3972289,neg,ns,0.000471321,0.000843417,0.558824042,0.576685254,pos,ns,0.239061154,-0.0000406,0.000029,-1.400421232,0.162387306,neg,ns,0.955309932,Mgmt,Mgmt_Intron,7,137039874,137039923,137039922,137039923,50,-,TTACACTTTCCACCTTTTGCTGTCAAGGGAAAATATTTCATCTTGCACCG,"Intron (Mgmt-201/Mgmt, intron 2 of 4)",7,136894614,137130266,235653,1,Mgmt-201,145260,Mgmt-201,Mgmt,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,16,17314,ENSMUSG00000054612,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11418,cg23424255,-0.0000316,0.00000691,-4.575535338,0.00000688,loss,ns,-0.00000995,0.0000117,-0.847691748,0.397263665,neg,ns,0.013454023,0.003439573,3.911538459,0.00011273,pos,ns,3.947962344,-0.000306409,0.000118287,-2.59039585,0.010039471,neg,ns,0.868508457,Larp1,Larp1_threeUTR,11,58061137,58061186,58061185,58061186,50,-,AAAGAGTAGTTTACATCTTCACTTTCTGAAGACACTTGAATTTAGGACCG,3' UTR,11,58009064,58062031,52968,1,Larp1-201,52073,Gm12248-202;Gm12248-203;Gm12248-201;Larp1-201;Larp1-203,Gm12248;Gm12248;Gm12248;Larp1;Larp1,31948;31948;11730;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,6,73158,ENSMUSG00000037331,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23448,cg17473329,-0.00000928,0.00000189,-4.905340712,0.00000151,loss,yes,-0.00000272,0.00000321,-0.84756447,0.397334461,neg,ns,-0.001599339,0.000941288,-1.69909703,0.090304127,neg,ns,1.044292402,0.0000132,0.0000324,0.407920291,0.683613778,pos,ns,0.96041059,Eomes,Eomes_Exon,9,118484475,118484524,118484475,118484476,50,-,CGAAGAGGTGGCCAACCCTCCCCAGCGGTGGCTTGTCACGCCTGTCCAGC,"Exon (Eomes-202/Eomes, exon 6 of 6)",9,118478212,118485366,7155,1,Eomes-202,6263,Eomes-202;Eomes-201;Eomes-203,Eomes;Eomes;Eomes,0;0;5614,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,8,13813,ENSMUSG00000032446,conserved gene and region,9,118484282,118484551,270,*,270,14,0.555555556,0.704041721,0.051851852,0.000000295,CpGisland,TRUE,U13,Hc-P
17351,cg05898104,-0.0000184,0.00000493,-3.721680277,0.000234951,loss,ns,-0.0000071,0.00000838,-0.847479316,0.39738183,neg,ns,-0.004970038,0.00245608,-2.023564977,0.043872608,neg,ns,1.357806548,0.0000736,0.0000845,0.871896585,0.383939564,pos,ns,0.926059784,Agap1,Agap1_Exon,1,89823847,89823896,89823847,89823848,50,+,CGGGATGCAGCCAAACGCAAAGCATGGAAACTAAACCGTGTTGGTAGCCT,"Exon (Agap1-205/Agap1, exon 2 of 3)",1,89454806,89897617,442812,1,Agap1-201,369041,Agap1-201;Agap1-204;Agap1-202;Agap1-205,Agap1;Agap1;Agap1;Agap1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,29,347722,ENSMUSG00000055013,conserved gene but different region,1,89823847,89824048,202,*,202,14,0.613861386,0.788182832,0.069306931,7.84E-09,CpGisland,TRUE,U11,Tr-P
26495,cg24480093,0.0000897,0.00000821,10.92764033,9.90E-24,gain,yes,-0.0000118,0.0000139,-0.847443813,0.397401581,neg,ns,-0.002888787,0.004084816,-0.707201314,0.479972659,neg,ns,0.318783501,0.000641104,0.000140476,4.563781004,0.00000725,pos,ns,0.391378538,Casz1,Casz1_Intron,4,148807306,148807355,148807306,148807307,50,-,CGGTTAAGGAGAGTTTATGGGGAATATTGTTGAACTTCAGTAATCAGGTT,"Intron (Casz1-201/Casz1, intron 1 of 15)",4,148804429,148945129,140701,1,Casz1-201,2877,Casz1-201;Casz1-202;Casz1-203,Casz1;Casz1;Casz1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,94,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
13234,cg15808500,0.00000067,0.000000968,0.692172956,0.489346842,gain,ns,0.00000139,0.00000164,0.847433258,0.397407453,pos,ns,-0.000570259,0.00048189,-1.183379564,0.237565438,neg,ns,0.624216742,0.0000263,0.0000166,1.587319362,0.11345975,pos,ns,0.985053106,Nlgn2,Nlgn2_Exon,11,69830545,69830594,69830545,69830546,50,+,CGGGATTTTTAAATCTACCTGTGTCTGGCGGATTGAGCGTCGCCTCGTCA,"Exon (Nlgn2-201/Nlgn2, exon 2 of 7)",11,69823122,69834849,11728,2,Nlgn2-201,4255,Nlgn2-201;Nlgn2-202;Nlgn2-203;Nlgn2-204,Nlgn2;Nlgn2;Nlgn2;Nlgn2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,17,216856,ENSMUSG00000051790,conserved gene and region,11,69830545,69830622,78,*,78,8,0.512820513,1.575757576,0.102564103,0.00000181,CpGisland,TRUE,U11,Tr-P
27774,cg12598907,-0.00000538,0.00000548,-0.982537178,0.326601469,loss,ns,-0.00000789,0.00000931,-0.847342814,0.397457771,neg,ns,-0.001266095,0.002726228,-0.46441262,0.642678135,neg,ns,0.192006476,-0.0000378,0.0000938,-0.403443141,0.686900385,neg,ns,0.921428586,Rrp15,Rrp15_Intergenic_upstream,1,186835890,186835939,186835890,186835891,50,+,CGAAGCAGGCCCTGTGTTCAGCACTCAATCATTTCCTGTCACAGGTGCAG,Distal Intergenic,1,186720978,186749358,28381,2,Rrp15-201,-86532,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,11,67223,ENSMUSG00000001305,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10710,cg17196551,0.00000854,0.00000308,2.776432072,0.005830208,gain,ns,-0.00000443,0.00000522,-0.847338315,0.397460273,neg,ns,-0.000856961,0.001530521,-0.55991444,0.575942156,neg,ns,0.239621133,-0.0000505,0.0000526,-0.958663549,0.338475337,neg,ns,0.899145628,Unc5a,Unc5a_Exon,13,54997296,54997345,54997344,54997345,50,+,CAACGGGGGCGCTTTCTGTGAGGGGCAGAATGTCCAGAAAACAGCCTGCG,"Exon (Unc5a-201/Unc5a, exon 6 of 16)",13,54949411,55006018,56608,1,Unc5a-201,47885,Unc5a-201;Unc5a-202;Unc5a-203,Unc5a;Unc5a;Unc5a,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,12,107448,ENSMUSG00000025876,conserved gene and region,13,54997158,54997472,315,*,315,22,0.676190476,0.63,0.06984127,1.18E-13,CpGisland,TRUE,U11,Tr-P
1754,cg21033735,0.0000152,0.00000485,3.135796933,0.001878191,gain,ns,0.00000698,0.00000824,0.847315106,0.397473187,pos,ns,0.006241794,0.002414413,2.585222509,0.010188073,pos,ns,1.991907958,-0.000173333,0.000083,-2.087559652,0.03765382,neg,ns,0.066219188,Kctd1,Kctd1_fiveUTR,18,15063597,15063646,15063597,15063598,50,-,CGCATGCGCTATATTGGACCGCAGCGCTGAGAGCTTTTGTGTTTAATGAC,Promoter (<=1kb),18,14969400,15063618,94219,2,Kctd1-202,0,Kctd1-201;Kctd1-202;Kctd1-206;Kctd1-205,Kctd1;Kctd1;Kctd1;Kctd1,0;0;0;-1708,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,9,24,106931,ENSMUSG00000036225,conserved gene but different region,18,15063315,15063752,438,*,438,43,0.673515982,0.892352885,0.098173516,1.42E-32,CpGisland,TRUE,U3,Pr-B
27314,cg06788161,0.0000225,0.00000762,2.958538847,0.003328973,gain,ns,0.000011,0.0000129,0.847231651,0.397519621,pos,ns,0.007704406,0.003791427,2.032059884,0.042999945,pos,ns,1.366532103,-0.000195309,0.000130387,-1.497915611,0.135172709,neg,ns,0.623024907,Pabpc1l,Pabpc1l_Exon,2,164032535,164032584,164032535,164032536,50,+,CGGTGCTTTGGCTTTGTCAACTTTGAGAAGCATGAGGAAGCCCAGAAGGT,"Exon (Pabpc1l-201/Pabpc1l, exon 5 of 14)",2,164025450,164050538,25089,1,Pabpc1l-201,7085,Pabpc1l-201;Pabpc1l-203;Pabpc1l-205,Pabpc1l;Pabpc1l;Pabpc1l,0;0;-4416,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,381404,ENSMUSG00000054582,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13078,cg07237683,-0.00000264,0.00000539,-0.489095719,0.625119791,loss,ns,-0.00000776,0.00000916,-0.847166211,0.397556033,neg,ns,0.012106277,0.002684441,4.509794787,0.00000922,pos,ns,5.035437758,-0.000494476,0.0000923,-5.356245846,0.000000166,neg,yes,0.331570597,Arf6,Arf6_Exon,12,69372960,69373009,69373008,69373009,50,-,ATGTCAAGTTCAACGTATGGGATGTGGGCGGCCAGGACAAGATCCGGCCG,Promoter (<=1kb),12,69372150,69373783,1634,1,Arf6-201,810,Arf6-201;Gm18113-201,Arf6;Gm18113,0;-2937,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,8,11845,ENSMUSG00000044147,conserved gene and region,12,69371680,69373175,1496,*,1496,186,0.703877005,1.010385046,0.124331551,4.87E-160,CpGisland,TRUE,NA,NRS
10796,cg17337660,0.0000176,0.00000295,5.951801419,7.17E-09,gain,yes,0.00000425,0.00000502,0.847080348,0.397603813,pos,ns,0.002318222,0.001469724,1.577318369,0.115742161,pos,ns,0.936508412,-0.0000247,0.0000505,-0.488041011,0.625865796,neg,ns,0.10879835,Prr7,Prr7_Exon,13,55472082,55472131,55472130,55472131,50,-,ATCTGGGGTCTCATCGTCCTGCTCTGCTGCTTCTGCAGCTTCCTGCGCCG,"Exon (Prr7-201/Prr7, exon 2 of 3)",13,55464267,55473154,8888,1,Prr7-201,7815,Dbn1-201;Dbn1-203;Dbn1-202;Dbn1-206;Prr7-201,Dbn1;Dbn1;Dbn1;Dbn1;Prr7,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,6,432763,ENSMUSG00000034686,conserved gene and region,13,55471446,55473041,1596,*,1596,178,0.713032582,0.884290343,0.111528822,1.30E-143,CpGisland,TRUE,U3,Pr-B
25998,cg21357912,0.0000135,0.00000617,2.196378504,0.028805103,gain,ns,-0.00000887,0.0000105,-0.847051463,0.397619888,neg,ns,-0.002557564,0.003069223,-0.833293763,0.405320636,neg,ns,0.392201284,-0.0000938,0.00010555,-0.888968551,0.374709264,neg,ns,0.79777166,Ammecr1,Ammecr1_threeUTR,X,142852984,142853033,142853032,142853033,50,+,CAAAACTATCCTTTTCCCCCAAGCCATGTTGGGAAATATTGCTGACCTCG,3' UTR,20,142851146,142966728,115583,2,Ammecr1-201,113695,Ammecr1-201,Ammecr1,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,8,56068,ENSMUSG00000042225,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19848,cg11108049,-0.0000013,0.00000685,-0.189020075,0.850200772,loss,ns,0.00000986,0.0000116,0.846964914,0.397668054,pos,ns,0.001189139,0.003411517,0.348566057,0.72765172,pos,ns,0.13807644,0.0000927,0.000117322,0.789791053,0.430253494,pos,ns,0.814781257,Nlgn3,Nlgn3_Exon,X,101307049,101307098,101307097,101307098,50,-,TGTGTCTCCCCGTGTCTGGTCCCCAGGATCCGGCGCTAAGAAACAGGGCG,"Exon (Gm21986-201/Gm21986-201, exon 7 of 11)",20,101299168,101325963,26796,1,Nlgn3-202,7881,Nlgn3-202;Nlgn3-203;Nlgn3-206;Nlgn3-201;Nlgn3-205,Nlgn3;Nlgn3;Nlgn3;Nlgn3;Nlgn3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,16,245537,ENSMUSG00000031302,conserved gene and region,X,101307059,101307160,102,*,102,9,0.607843137,1.092857143,0.088235294,0.00000109,CpGisland,TRUE,U11,Tr-P
21129,cg23970267,-0.000000371,0.00000402,-0.092159962,0.926630475,loss,ns,0.00000579,0.00000683,0.846891918,0.397708681,pos,ns,0.001101311,0.002001315,0.550293907,0.582514093,pos,ns,0.234693563,-0.0000805,0.0000688,-1.170109832,0.242855553,neg,ns,0.848282692,Rrp9,Rrp9_Exon,9,106483131,106483180,106483131,106483132,50,+,CGCAGCAAGCTCATTCTCATTTGGGAGGCCCAGAGCTGCCAGCACTTGTA,"Exon (Rrp9-201/Rrp9, exon 8 of 15)",9,106477269,106485424,8156,1,Rrp9-201,5862,Rrp9-202;Rrp9-201;Rrp9-203;Rrp9-208;Rrp9-206;Rrp9-207;Rrp9-205,Rrp9;Rrp9;Rrp9;Rrp9;Rrp9;Rrp9;Rrp9,7168;0;0;0;2331;0;-1284,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,27966,ENSMUSG00000041506,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24,cg15548222,-0.000000781,0.000000453,-1.724837324,0.085553503,loss,ns,-0.000000651,0.000000769,-0.846889659,0.397709938,neg,ns,0.00017282,0.000225279,0.767139074,0.443582685,pos,ns,0.353025415,-0.0000115,0.00000775,-1.483090234,0.139066351,neg,ns,0.009845656,Rab10,Rab10_Exon,12,3309365,3309414,3309413,3309414,50,-,GGAATCCCCGATCAGGAGCAGCTTGAAAAGCAGGTCGTACGTCTTCTTCG,Promoter (<=1kb),12,3247428,3309969,62542,2,Rab10-201,555,Rab10-201,Rab10,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,3,19325,ENSMUSG00000020671,conserved gene and region,12,3309325,3310215,891,*,891,114,0.708193042,1.022303187,0.127946128,5.29E-100,CpGisland,TRUE,U1,Pr-A
23842,cg08486684,0.00000202,0.00000238,0.846982813,0.397658092,gain,ns,0.00000343,0.00000405,0.84682198,0.397747607,pos,ns,0.001001585,0.001185665,0.844745225,0.398904564,pos,ns,0.399130994,-0.00000096,0.0000408,-0.023549357,0.981227219,neg,ns,0.027394829,En1,En1_Promoter,1,120600211,120600260,120600211,120600212,50,+,CGGGGCCGCTCACTTTGATTAAGCGTCTTGCCAGCGCGATGTGACAGAGC,Promoter (2-3kb),1,120602418,120607992,5575,1,En1-201,-2158,En1-201,En1,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,23,36,13798,ENSMUSG00000058665,conserved gene and region,1,120600143,120600235,93,*,93,12,0.602150538,1.425287356,0.129032258,7.57E-11,CpGisland,TRUE,U13,Hc-P
25024,cg25773960,-3.74E-08,0.000000923,-0.040552237,0.967678967,loss,ns,-0.00000133,0.00000157,-0.846799161,0.397760309,neg,ns,0.000395613,0.000459391,0.861168371,0.389810905,pos,ns,0.409146015,-0.000022,0.0000158,-1.390290707,0.165437985,neg,ns,0.972852132,Bub3,Bub3_threeUTR,7,131568690,131568739,131568690,131568691,50,-,CGCCAAGTGACAGATGCAGAAACAAAACCCAAGTGAGTATGCTTCACCTG,3' UTR,7,131560222,131571892,11671,1,Bub3-201,8468,Bub3-201;Bub3-204;Bub3-207;Bub3-202;Bub3-205;Bub3-203;Fgfr2-217,Bub3;Bub3;Bub3;Bub3;Bub3;Bub3;Fgfr2,0;0;0;8251;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,1,12237,ENSMUSG00000066979,conserved gene but different region,7,131568511,131568705,195,*,195,11,0.487179487,0.955882353,0.056410256,0.00000365,CpGisland,TRUE,U10,Tr-S
7588,cg03779374,0.0000665,0.00000917,7.250556566,3.33E-12,gain,yes,-0.0000132,0.0000156,-0.84659364,0.397874716,neg,ns,0.008019525,0.004565353,1.756605511,0.079972381,pos,ns,1.097059975,-0.000591602,0.000157002,-3.768115299,0.000196858,neg,ns,0.080744614,Zbtb20,Zbtb20_Exon,16,43363026,43363075,43363074,43363075,50,+,CCTGGCCTGTGCCAAGCTGTGCAGTCGCTTAGTGATGTGGACAGGAGTCG,Promoter (<=1kb),16,43363048,43569761,206714,1,Zbtb20-214,0,Zbtb20-209;Zbtb20-211;Zbtb20-217;Zbtb20-218;Zbtb20-204;Zbtb20-215;Zbtb20-201;Zbtb20-203;Zbtb20-214;Zbtb20-213;Zbtb20-219;Zbtb20-216,Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,17,98,56490,ENSMUSG00000022708,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13307,cg09915949,0.00000485,0.000000949,5.111826804,0.000000559,gain,yes,-0.00000136,0.00000161,-0.846588717,0.397877456,neg,ns,-0.000523108,0.000472297,-1.107583025,0.268900576,neg,ns,0.570408267,0.0000221,0.0000162,1.358846505,0.175183073,pos,ns,0.021781026,Egr3,Egr3_Promoter,14,70076777,70076826,70076825,70076826,50,-,TTCTAATGTTCCATTGTGAGGAGCTTCCATTGTGACGTCGCGCCCCTTCG,Promoter (<=1kb),14,70077203,70079955,2753,1,Egr3-201,-426,Egr3-201;Egr3-204;Egr3-203;Egr3-202,Egr3;Egr3;Egr3;Egr3,0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,10,19,13655,ENSMUSG00000033730,conserved gene and region,14,70076812,70076877,66,*,66,7,0.621212121,1.105263158,0.106060606,0.00000889,CpGisland,TRUE,U3,Pr-B
2198,cg26657133,-0.0000351,0.00000795,-4.417413879,0.0000138,loss,ns,0.0000114,0.0000135,0.846572515,0.397886477,pos,ns,-0.000823358,0.00395755,-0.208047453,0.835328532,neg,ns,0.078142684,-0.00025932,0.0001361,-1.905365051,0.057657665,neg,ns,0.898903084,Cttnbp2,Cttnbp2_Exon,6,18434006,18434055,18434006,18434007,50,+,CGGCACAGCCTGCAGGTGCCACAGTTAAATCTATGGATGGTTTTGGTGGC,Promoter (<=1kb),6,18366565,18434451,67887,2,Cttnbp2-207,396,Cttnbp2-207;Cttnbp2-208;Cttnbp2-201;Cttnbp2-203;Cttnbp2-202,Cttnbp2;Cttnbp2;Cttnbp2;Cttnbp2;Cttnbp2,0;0;0;0;79036,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,30785,ENSMUSG00000000416,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3937,cg00858647,-0.00000294,0.00000329,-0.892386118,0.372878183,loss,ns,-0.00000474,0.00000559,-0.846523727,0.397913638,neg,ns,-0.00258048,0.00163872,-1.574692429,0.116347422,neg,ns,0.934243235,0.0000732,0.0000564,1.2984413,0.195100831,pos,ns,0.911785225,Adgrb3,Adgrb3_Promoter,1,25828570,25828619,25828570,25828571,50,-,CGCAGTGTTCTTCAGGATAGAGTGTAGGCGTTGAGAGCCAATGTGACAAT,Promoter (<=1kb),1,25067550,25829511,761962,2,Adgrb3-205,892,Adgrb3-206;Adgrb3-205;Adgrb3-207;Adgrb3-201;Adgrb3-210,Adgrb3;Adgrb3;Adgrb3;Adgrb3;Adgrb3,0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,2,25,210933,ENSMUSG00000033569,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5991,cg18818910,-0.0000252,0.00000319,-7.912516216,4.50E-14,loss,yes,0.00000458,0.00000541,0.846515641,0.397918141,pos,ns,-0.002586545,0.001586261,-1.630592212,0.103991933,neg,ns,0.98300035,-0.0000315,0.0000546,-0.576709591,0.564554174,neg,ns,0.946661768,Dab2ip,Dab2ip_threeUTR,2,35729084,35729133,35729132,35729133,50,-,TAACTGTGATTTTTTTTCCTTTCACAGTATGCATTAGAAACAAAAGCCCG,3' UTR,2,35558266,35730994,172729,1,Dab2ip-205,170818,Dab2ip-205;Dab2ip-206;Dab2ip-209;Dab2ip-211;Dab2ip-202;Dab2ip-207;Dab2ip-203;Dab2ip-201;Dab2ip-208;Dab2ip-204;Dab2ip-213,Dab2ip;Dab2ip;Dab2ip;Dab2ip;Dab2ip;Dab2ip;Dab2ip;Dab2ip;Dab2ip;Dab2ip;Dab2ip,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,TRUE,FALSE,threeUTR,9,12,69601,ENSMUSG00000026883,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
23077,cg02156626,0.0000643,0.0000123,5.20598984,0.000000352,gain,yes,-0.0000177,0.000021,-0.846486293,0.39793448,neg,ns,0.030849865,0.00614278,5.022133741,0.000000864,pos,ns,6.063446159,-0.000806674,0.00021125,-3.81857926,0.000162105,neg,ns,0.537324386,Rnf220,Rnf220_Intron,4,117281262,117281311,117281262,117281263,50,-,CGGGACAATCAATCGGCCTGCAGTGTCACCTGCCACCTCGCTGAACAGTT,"Intron (Rnf220-201/Rnf220, intron 8 of 14)",4,117271463,117497052,225590,2,Rnf220-201,215741,Rnf220-201;Rnf220-203;Rnf220-212;Rnf220-202;Rnf220-205;Rnf220-209;Rnf220-213;Rnf220-210;Rnf220-206;Rnf220-208,Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8701,cg07131533,0.000125841,0.0000135,9.292484816,2.76E-18,gain,yes,-0.0000195,0.000023,-0.846472981,0.397941892,neg,ns,0.013917339,0.006740124,2.064848987,0.039768572,pos,ns,1.400460003,-0.000491771,0.000231792,-2.121600015,0.03466445,neg,ns,0.109180799,Gm31907,Gm31907_fiveUTR,18,45559503,45559552,45559551,45559552,50,+,CCCTGCAGCTTTAACAGCCCTGACATGGAAACCCCATTGCAGTTCCAGCG,Promoter (<=1kb),18,45501590,45560130,58541,2,Gm31907-202,578,Gm31907-202;Kcnn2-205;Kcnn2-201;Kcnn2-207;Kcnn2-206;Kcnn2-202;Kcnn2-208;Kcnn2-203,Gm31907;Kcnn2;Kcnn2;Kcnn2;Kcnn2;Kcnn2;Kcnn2;Kcnn2,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,15,15,102634286,NA,mapped to different genes,18,45559551,45559588,38,*,38,7,0.789473684,1.272727273,0.184210526,0.000000159,CpGisland,TRUE,U3,Pr-B
1806,cg11614630,-0.0000239,0.00000957,-2.496213383,0.013071858,loss,ns,-0.0000138,0.0000163,-0.8463945,0.397985589,neg,ns,-0.009706959,0.00476419,-2.037483796,0.042450505,neg,ns,1.372117139,0.00019306,0.00016384,1.178346937,0.239562037,pos,ns,0.780805446,Dll1,Dll1_Promoter,17,15378809,15378858,15378809,15378810,50,+,CGGGGAGACTGTTTAACTTCAGCGTTTCTATAGGAGCCTGTTGTAGTTTA,Promoter (1-2kb),17,15374794,15376872,2079,2,Dll1-205,-1937,Dll1-201;Dll1-203;Dll1-202;Dll1-205,Dll1;Dll1;Dll1;Dll1,-2833;-4737;-3709;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,9,9,13388,ENSMUSG00000014773,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
9108,cg19224433,-0.0000469,0.0000157,-2.978976255,0.003120594,loss,ns,-0.0000226,0.0000267,-0.845884632,0.398269551,neg,ns,-0.025607988,0.007832567,-3.269424697,0.001198865,neg,ns,2.921229656,0.000360441,0.000269361,1.338132765,0.181833852,pos,ns,0.225869984,Tbcc,Tbcc_Promoter,17,46890326,46890375,46890326,46890327,50,-,CGAGTTTCTAACCTTGTTCTTATAAACAAACCCACATGTGCAGCTGCCGC,Promoter (<=1kb),17,46890684,46891847,1164,1,Tbcc-201,-358,Tbcc-201,Tbcc,-309,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,2,72726,ENSMUSG00000036430,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
14345,cg22941945,-0.00000375,0.00000414,-0.905371081,0.365971941,loss,ns,-0.00000595,0.00000704,-0.845788857,0.398322904,neg,ns,-0.003248914,0.002062126,-1.575517195,0.116157051,neg,ns,0.934954423,0.0000521,0.0000709,0.734716059,0.463067844,pos,ns,0.921218417,Atg9a,Atg9a_threeUTR,1,75186641,75186690,75186641,75186642,50,+,CGGCCTTGAGGCTCCATTCATTGAGAAACAGAGAGCCAGGTCCCCAGAAG,3' UTR,1,75180860,75191926,11067,2,Atg9a-208,5236,Atg9a-208;Atg9a-209;Atg9a-207;Atg9a-210;Atg9a-205;Atg9a-201;Atg9a-204;Atg9a-206;Atg9a-203;Atg9a-202,Atg9a;Atg9a;Atg9a;Atg9a;Atg9a;Atg9a;Atg9a;Atg9a;Atg9a;Atg9a,0;0;0;0;0;0;0;5035;5272;5024,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,4,245860,ENSMUSG00000033124,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25260,cg15297110,-0.000000128,0.00000155,-0.082371111,0.934404767,loss,ns,0.00000223,0.00000264,0.84578674,0.398324084,pos,ns,0.00228437,0.000773153,2.9546146,0.003370413,pos,ns,2.472316904,-0.0000806,0.0000266,-3.02983495,0.002652853,neg,ns,0.068657232,Cxxc4,Cxxc4_Exon,3,134240474,134240523,134240522,134240523,50,-,AAATTGCCAATCTGGCAGACTGCCCGCAGAATCATTCCTCCTCCTCCTCG,"Exon (Cxxc4-203/Cxxc4, exon 3 of 4)",3,134236484,134259620,23137,1,Cxxc4-204,3990,Cxxc4-204;Cxxc4-203;Cxxc4-202;Cxxc4-201;Cxxc4-205,Cxxc4;Cxxc4;Cxxc4;Cxxc4;Cxxc4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,18,20,319478,ENSMUSG00000044365,mapped to different genes,3,134240265,134240649,385,*,385,21,0.587012987,0.63362069,0.054545455,5.57E-11,CpGisland,TRUE,U3,Pr-B
21785,cg11369086,-0.00000557,0.00000233,-2.391389809,0.0173807,loss,ns,-0.00000335,0.00000396,-0.845716087,0.398363445,neg,ns,-0.001066665,0.001159114,-0.920241418,0.358162149,neg,ns,0.445920313,0.00000315,0.0000399,0.078928401,0.937140497,pos,ns,0.947676098,Lmo1,Lmo1_Intron,7,109156180,109156229,109156180,109156181,50,-,CGCTAATTAGTTTGGGGAAGAAAGGAGGGGAAAAGCCACCCTGCCTCTCT,"Intron (Lmo1-201/Lmo1, intron 1 of 3)",7,109138572,109170519,31948,2,Lmo1-201,14290,Lmo1-201;Lmo1-202;Lmo1-203,Lmo1;Lmo1;Lmo1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,66,109594,ENSMUSG00000036111,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18362,cg17980056,0.000017,0.00000903,1.879147833,0.061162323,gain,ns,0.000013,0.0000153,0.845571317,0.398444106,pos,ns,-0.001747903,0.004493538,-0.388981483,0.697556889,neg,ns,0.156420368,0.000140986,0.000154532,0.912341986,0.362297667,pos,ns,0.119680068,Otp,Otp_Promoter,13,94872520,94872569,94872568,94872569,50,-,ATGATCATGTGGGAAATGCCTTAAATTATCAACAGCAATGGGCCTGACCG,Promoter (3-4kb),13,94875602,94885130,9529,1,Otp-201,-3082,Otp-201,Otp,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,27,34,18420,ENSMUSG00000021685,conserved gene and region,13,94872568,94872819,252,*,252,16,0.626984127,0.654545455,0.063492064,1.84E-09,CpGisland,TRUE,U13,Hc-P
22497,cg05655308,0.000000649,0.000000945,0.686772857,0.492739278,gain,ns,0.00000136,0.00000161,0.84556628,0.398446913,pos,ns,0.000241767,0.000470215,0.514163563,0.607503965,pos,ns,0.216450883,0.00000942,0.0000162,0.582689653,0.560525829,pos,ns,0.9726772,Atg7,Atg7_threeUTR,6,114860520,114860569,114860568,114860569,50,-,TTCTTCAAAAAATACCTACAAATTTCTCTGTACATTCTTTACGCACAGCG,3' UTR,6,114643097,114860614,217518,1,Atg7-201,217423,Atg7-201;Atg7-202;Atg7-215;Atg7-210;Atg7-212;Atg7-207;Atg7-211;Atg7-213;Vgll4-205;Vgll4-201;Vgll4-202;Vgll4-206;Vgll4-204;Vgll4-203,Atg7;Atg7;Atg7;Atg7;Atg7;Atg7;Atg7;Atg7;Vgll4;Vgll4;Vgll4;Vgll4;Vgll4;Vgll4,0;0;217398;217393;217391;217391;137420;4369;0;0;4188;14451;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,74244,ENSMUSG00000030314,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2525,cg16948257,0.00000277,0.00000298,0.930634983,0.352766562,gain,ns,-0.00000428,0.00000506,-0.845440035,0.39851726,neg,ns,0.004637562,0.001482049,3.12915494,0.001919822,pos,ns,2.716738982,0.0000218,0.000051,0.426752107,0.669856106,pos,ns,0.91362257,Parl,Parl_fiveUTR,16,20293335,20293384,20293335,20293336,50,+,CGTGTAAGCTAACACAAACCTGTCACAGTCCGCTGGCCATCACTTAGGTT,5' UTR,16,20279818,20301813,21996,2,Parl-208,8429,Parl-208;Parl-205;Parl-201;Parl-212;Parl-213;Parl-202;Parl-206;Parl-204;Parl-207;Parl-209,Parl;Parl;Parl;Parl;Parl;Parl;Parl;Parl;Parl;Parl,0;0;0;0;0;0;0;0;0;8977,TRUE,FALSE,FALSE,TRUE,TRUE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,2,381038,ENSMUSG00000033918,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20942,cg00851590,-0.0000776,0.0000113,-6.870672408,3.51E-11,loss,yes,0.0000162,0.0000192,0.845343503,0.398571056,pos,ns,-0.015099409,0.005621452,-2.686033567,0.0076202,neg,ns,2.118033614,0.000214876,0.000193321,1.111494623,0.267216786,pos,ns,0.672664201,Dchs1,Dchs1_Intron,7,105777905,105777954,105777905,105777906,50,+,CGGGGCACTCGTGGTCAGCTCTGCGGCTGCAGCTGTGACCTCCAGGTCCC,"Intron (Gm15645-201/Gm15645, intron 4 of 4)",7,105752990,105787654,34665,2,Dchs1-201,9700,Dchs1-201;Dchs1-203;Gm15645-201,Dchs1;Dchs1;Gm15645,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,3,233651,ENSMUSG00000036862,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
15935,cg04896252,0.0000133,0.0000101,1.31797646,0.188484607,gain,ns,-0.0000145,0.0000171,-0.845247148,0.398624758,neg,ns,0.010233392,0.005016479,2.039955003,0.042202158,pos,ns,1.374665338,-0.000377497,0.000172516,-2.188179217,0.0294027,neg,ns,0.561668477,Adgrl1,Adgrl1_fiveUTR,8,83926247,83926296,83926247,83926248,50,-,CGATGCTTAAAGTAGAAGTGGAGCAGAAAGGTAAACGCACTGTTACCAAT,5' UTR,8,83900105,83941954,41850,1,Adgrl1-207,26142,Adgrl1-207;Adgrl1-202;Adgrl1-201;Adgrl1-205;Adgrl1-210;Adgrl1-206;Adgrl1-204,Adgrl1;Adgrl1;Adgrl1;Adgrl1;Adgrl1;Adgrl1;Adgrl1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,TRUE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,4,330814,ENSMUSG00000013033,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2591,cg00959147,-0.000000666,0.000000313,-2.12769776,0.034151047,loss,ns,0.000000449,0.000000532,0.844902442,0.398816908,pos,ns,0.00022129,0.000155814,1.420220353,0.156548464,pos,ns,0.80535119,-0.0000135,0.00000536,-2.515991283,0.012374785,neg,ns,0.006469044,Eif4g1,Eif4g1_fiveUTR,16,20672809,20672858,20672857,20672858,50,-,GAAATGGTTGTGGACTACGTCTGTGCGGCTGCGTGGGGCTCGGCCGCGCG,Promoter (<=1kb),16,20672820,20678639,5820,1,Eif4g1-225,0,Eif4g1-220;Eif4g1-208;Eif4g1-201;Eif4g1-206;Eif4g1-216;Eif4g1-202;Eif4g1-217;Eif4g1-207;Eif4g1-218;Eif4g1-225;Eif4g1-214;Eif4g1-203;Eif4g1-222;Eif4g1-221;Eif4g1-205;Eif4g1-212;Eif4g1-204;Eif4g1-215;Eif4g1-219,Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,7,10,208643,ENSMUSG00000045983,conserved gene and region,16,20672514,20673561,1048,*,1048,121,0.738549618,0.847148736,0.115458015,6.53E-100,CpGisland,TRUE,U1,Pr-A
27053,cg08722450,0.00000011,0.00000466,0.023566461,0.981213587,gain,ns,0.00000669,0.00000792,0.844860005,0.398840567,pos,ns,-0.00356694,0.00231967,-1.537692962,0.125143739,neg,ns,0.902590872,-0.0000766,0.0000798,-0.960291057,0.337657135,neg,ns,0.636741736,Phex,Phex_Intron,X,157297325,157297374,157297373,157297374,50,+,TTAAATACAATTTCTCTCTCTTCACCCATTTTCCACTATCTGCCTGTCCG,"Intron (Phex-201/Phex, intron 12 of 21)",20,157162075,157415286,253212,2,Phex-201,117912,Phex-201;Phex-203,Phex;Phex,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,2,18675,ENSMUSG00000057457,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12292,cg21574459,0.000100523,0.00000934,10.76428678,3.62E-23,gain,yes,-0.0000134,0.0000159,-0.844757828,0.398897537,neg,ns,0.015227788,0.004647915,3.276261996,0.001171169,pos,ns,2.931380317,-0.000582394,0.000159841,-3.643576199,0.00031511,neg,ns,0.085827758,Wdr7,Wdr7_Intron,18,63864052,63864101,63864052,63864053,50,+,CGGCTGGGGTCAATGCCTTGCCTATTGATCAGTATCCCTGCAGTCCCGTG,"Intron (Wdr7-201/Wdr7, intron 20 of 27)",18,63708685,63989776,281092,1,Wdr7-201,155367,Wdr7-201;Wdr7-205;Wdr7-204;Wdr7-202,Wdr7;Wdr7;Wdr7;Wdr7,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,11,104082,ENSMUSG00000040560,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
25233,cg27391649,0.00000783,0.00000284,2.752847479,0.006256216,gain,ns,0.00000408,0.00000483,0.844748314,0.398902842,pos,ns,0.005307426,0.001415586,3.749279478,0.000211548,pos,ns,3.674591143,-0.000102723,0.0000487,-2.110097298,0.035650978,neg,ns,0.106360205,Lin28a,Lin28a_Promoter,4,134018876,134018925,134018924,134018925,50,-,CGGCTTTTCAAAGGCTCCCAAATTCTAAAAGACAATGACCCAACCCCCCG,Promoter (<=1kb),4,134003330,134018841,15512,2,Lin28a-201,-84,Lin28a-201;Lin28a-204,Lin28a;Lin28a,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,3,5,83557,ENSMUSG00000050966,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
26345,cg15810551,0.0000218,0.00000356,6.112541142,2.94E-09,gain,yes,0.00000511,0.00000605,0.844655731,0.398954467,pos,ns,0.006220683,0.001771791,3.510957239,0.000512774,pos,ns,3.290074424,-0.0000452,0.0000609,-0.742611241,0.458279416,neg,ns,0.132249916,Kiz,Kiz_Intron,2,146834475,146834524,146834523,146834524,50,+,ACAACAATATCAATTAATCATGCAGCGGGCAAACAAGGAGATTTATCCCG,"Intron (Gm14114-201/Gm14114-201, intron 1 of 1)",2,146855864,146970097,114234,1,Kiz-201,-21340,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,29,228730,ENSMUSG00000074749,mapped to different genes,2,146834500,146834593,94,*,94,8,0.531914894,1.205128205,0.085106383,0.00000736,CpGisland,TRUE,U13,Hc-P
10139,cg24151953,0.00000427,0.00000393,1.086808722,0.27796567,gain,ns,-0.00000564,0.00000667,-0.844551776,0.399012438,neg,ns,-0.000790198,0.001955103,-0.404171789,0.686365089,neg,ns,0.163444814,0.0000674,0.0000672,1.002914524,0.316684294,pos,ns,0.894525339,Chd8,Chd8_Exon,14,52202268,52202317,52202268,52202269,50,+,CGGGTCTCCAGGTCCACATCAAGGTGATTAGGCTCTTCCATGCACTCCAC,"Exon (Gm26590-202/Gm26590-202, exon 1 of 3)",14,52198151,52237572,39422,2,Chd8-201,35255,Chd8-201;Chd8-212;Chd8-215;Chd8-207;Chd8-216;Chd8-206;Chd8-209;Chd8-203;Chd8-204;Supt16-201,Chd8;Chd8;Chd8;Chd8;Chd8;Chd8;Chd8;Chd8;Chd8;Supt16,0;0;0;0;0;0;0;0;5386;-4852,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,12,67772,ENSMUSG00000053754,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10758,cg18996442,0.00000324,0.00000132,2.458900487,0.014482541,gain,ns,0.00000189,0.00000224,0.844461612,0.399062723,pos,ns,0.0000428,0.000655151,0.065353012,0.947935059,pos,ns,0.023221414,0.00000599,0.0000225,0.265712985,0.790636884,pos,ns,0.031447901,Jph4,Jph4_fiveUTR,14,55115253,55115302,55115253,55115254,50,-,CGAACTTGCCCCCGGGGGACATGCATGTAGTTGGCGCGGCCTCAGCCCCC,5' UTR,14,55106826,55116935,10110,2,Jph4-201,1633,Jph4-201;Jph4-202;Jph4-203;Jph4-204,Jph4;Jph4;Jph4;Jph4,0;0;-4695;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,11,319984,ENSMUSG00000022208,conserved gene but different region,14,55114804,55115549,746,*,746,72,0.71849866,0.747869674,0.096514745,1.44E-53,CpGisland,TRUE,U3,Pr-B
21058,cg06328765,-0.000115409,0.0000407,-2.835803133,0.004871663,loss,ns,-0.0000584,0.0000691,-0.844447127,0.399070801,neg,ns,0.00718405,0.0202553,0.354675046,0.723074204,pos,ns,0.140817132,-0.00054228,0.000696578,-0.778491198,0.436873294,neg,ns,0.616915486,Dcdc5,Dcdc5_Intron,2,106195302,106195351,106195350,106195351,50,+,TTGTTCATGTCTGAGTAGTCACCTTAATGATAGCAGATGGAAACGCCACG,"Intron (Dcdc5-202/Dcdc5, intron 10 of 35)",2,106038218,106404066,365849,1,Dcdc5-202,157084,Dcdc5-202,Dcdc5,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,22,329482,ENSMUSG00000074981,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
7529,cg17146242,0.0000433,0.00000751,5.760307993,2.02E-08,gain,yes,0.0000108,0.0000128,0.844219773,0.399197615,pos,ns,0.012773759,0.003737708,3.417538005,0.000716287,pos,ns,3.144912648,-0.00034633,0.000128539,-2.694349552,0.007436952,neg,ns,0.403189743,Sobp,Sobp_Exon,10,43022665,43022714,43022665,43022666,50,-,CGAGCATCTGTTAGCGGGATATTCCAAGAGTCTGGAGTGAGCAGCTGCAC,"Exon (Sobp-201/Sobp, exon 6 of 7)",10,43002500,43174530,172031,2,Sobp-201,151816,Sobp-201,Sobp,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,19,109205,ENSMUSG00000038248,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
14857,cg19770439,-0.000000729,0.000000759,-0.960857152,0.33737284,loss,ns,0.00000109,0.00000129,0.844002958,0.399318574,pos,ns,0.000899308,0.000377553,2.381939282,0.017824737,pos,ns,1.74897687,-0.0000166,0.000013,-1.278758613,0.201938535,neg,ns,0.975018168,Phf12,Phf12_Exon,11,78023046,78023095,78023046,78023047,50,+,CGCTCCAGTGCAGCATATTGAAACATTTATCTGCTAAGCAGATGCCTTCG,"Exon (Phf12-202/Phf12, exon 9 of 11)",11,77982754,78026214,43461,1,Phf12-202,40292,Phf12-202;Phf12-201;Phf12-207;Phf12-206;Phf12-208;Phf12-205;Phf12-203,Phf12;Phf12;Phf12;Phf12;Phf12;Phf12;Phf12,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,14,27,268448,ENSMUSG00000037791,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24112,cg26029512,0.000000489,0.000000595,0.821663472,0.41189993,gain,ns,-0.000000854,0.00000101,-0.843874793,0.399390086,neg,ns,-0.00052574,0.000296363,-1.773972419,0.077049263,neg,ns,1.113231512,0.00000903,0.0000102,0.886147063,0.376225176,pos,ns,0.981248527,Prkcb,Prkcb_Exon,7,122627647,122627696,122627695,122627696,50,+,CTCTCATAGTGTGGGCGAAATGCTGAAAACTTCGACCGATTTTTCACCCG,"Exon (Prkcb-205/Prkcb, exon 17 of 18)",7,122288751,122634399,345649,1,Prkcb-205,338896,Prkcb-205;Prkcb-202;Prkcb-201;Prkcb-203,Prkcb;Prkcb;Prkcb;Prkcb,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,7,18751,ENSMUSG00000052889,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21980,cg26340938,0.00000821,0.0000015,5.459175013,9.82E-08,gain,yes,-0.00000215,0.00000255,-0.843830126,0.39941501,neg,ns,-0.000460281,0.000748069,-0.615292371,0.538813076,neg,ns,0.268561874,0.0000216,0.0000257,0.838739184,0.402261959,pos,ns,0.962170778,Faf1,Faf1_Intron,4,109953202,109953251,109953250,109953251,50,-,ATAAGTAAATACATCAGAATAAATCACACCGGCAAGTCTTTTGTATGTCG,"Intron (Faf1-201/Faf1, intron 18 of 18)",4,109676588,109963960,287373,1,Faf1-201,276614,Faf1-201,Faf1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,24,14084,ENSMUSG00000010517,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27387,cg10061379,-0.0000191,0.0000104,-1.834705091,0.067507548,loss,ns,-0.0000149,0.0000176,-0.843748409,0.399460612,neg,ns,0.013213371,0.005170052,2.555752011,0.01107274,pos,ns,1.955744888,-0.000530952,0.000177798,-2.986272387,0.003049146,neg,ns,0.162504425,Pou2f1,Pou2f1_Intron,1,166001177,166001226,166001177,166001178,50,+,CGGCGTTGGGCTGTGAGTGGCTGTTATTAAAGGTCTGAATTACTAAACAT,"Intron (Pou2f1-208/Pou2f1, intron 1 of 16)",1,165865154,166002678,137525,2,Pou2f1-208,1452,Pou2f1-208;Pou2f1-206;Pou2f1-216;Pou2f1-209;Pou2f1-201;Pou2f1-215;Pou2f1-214;Pou2f1-211;Pou2f1-212,Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,18,18986,ENSMUSG00000026565,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
2105,cg25195795,0.000150858,0.0000354,4.263105505,0.0000268,gain,ns,-0.0000507,0.0000601,-0.843434392,0.399635874,neg,ns,0.014271077,0.017612378,0.810286744,0.418396971,pos,ns,0.378411468,0.000151523,0.000605688,0.25016645,0.802624335,pos,ns,0.486841262,Skida1,Skida1_Promoter,2,18048863,18048912,18048863,18048864,50,+,CGCTGATTGGACACTCCTGACAGGTGATGCAATAAAAATTGATATTCCAC,Promoter (<=1kb),2,18044083,18049051,4969,2,Skida1-202,139,Skida1-205;Skida1-202;Skida1-201;Skida1-203;Skida1-204,Skida1;Skida1;Skida1;Skida1;Skida1,0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,12,31,72668,ENSMUSG00000054074,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
23796,cg10400255,0.0000837,0.0000153,5.467830411,9.39E-08,gain,yes,-0.0000219,0.000026,-0.843397138,0.39965667,neg,ns,0.018338677,0.007617804,2.407344273,0.016653163,pos,ns,1.778503274,-0.000340351,0.000261976,-1.299168774,0.194851419,neg,ns,0.427159874,Mbnl2,Mbnl2_Exon,14,120395699,120395748,120395747,120395748,50,+,CTGTTATTAAAAGACTCAGTCGACTGCCAAAGCAATGAAGCGACCTCTCG,"Exon (Mbnl2-201/Mbnl2, exon 6 of 9)",14,120275669,120431697,156029,1,Mbnl2-201,120030,Mbnl2-201;Mbnl2-204;Mbnl2-206;Mbnl2-202;Mbnl2-203;Mbnl2-208;Mbnl2-210;Mbnl2-205,Mbnl2;Mbnl2;Mbnl2;Mbnl2;Mbnl2;Mbnl2;Mbnl2;Mbnl2,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,16,105559,ENSMUSG00000022139,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5463,cg20283446,0.0000284,0.00000594,4.782633292,0.00000268,gain,ns,0.00000851,0.0000101,0.843329343,0.399694516,pos,ns,0.010129222,0.002955756,3.426948501,0.000692799,pos,ns,3.159392778,-0.000286592,0.000101648,-2.819448774,0.005120287,neg,ns,0.914422651,Mvb12b,Mvb12b_Intergenic_upstream,2,34016642,34016691,34016690,34016691,50,+,GCATTACCTCGTCTAAATGTCACCCACCGATATTTTGTTAGACATTAGCG,Distal Intergenic,2,33729953,33887946,157994,2,Mvb12b-201,-128696,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,16,47,72543,ENSMUSG00000038740,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27879,cg03303962,0.00000372,0.00000563,0.660278918,0.509565161,gain,ns,-0.00000807,0.00000957,-0.843324218,0.399697377,neg,ns,-0.005666612,0.002804118,-2.020817938,0.044158001,neg,ns,1.354990591,0.000125652,0.0000964,1.302987977,0.193545873,pos,ns,0.718976392,Smyd2,Smyd2_Intergenic_upstream,1,190034159,190034208,190034159,190034160,50,-,CGGCAGGAAGATTTCTTTGGAATGATGTGAATTTAATGAATCATGAAAAA,Distal Intergenic,1,189880492,189922363,41872,2,Smyd2-201,-111845,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,7,226830,ENSMUSG00000026603,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23168,cg21165934,0.0000498,0.00000937,5.318681312,0.000000201,gain,yes,-0.0000134,0.0000159,-0.843223741,0.399753471,neg,ns,-0.004702551,0.004664147,-1.008233735,0.314128579,neg,ns,0.50289255,0.000130918,0.0001604,0.816197986,0.415013633,pos,ns,0.7927347,Rnf220,Rnf220_Intron,4,117379962,117380011,117380010,117380011,50,+,TGGTCCCGGGGCCTAATTTGCATACTAATTACTGAGTGCAAATGGGACCG,"Intron (Rnf220-201/Rnf220, intron 2 of 14)",4,117271463,117497052,225590,2,Rnf220-201,117041,Rnf220-201;Rnf220-202;Rnf220-207,Rnf220;Rnf220;Rnf220,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7411,cg08835797,-0.0000173,0.0000192,-0.900594515,0.368503048,loss,ns,0.0000276,0.0000327,0.843166879,0.399785219,pos,ns,0.01122059,0.00957419,1.171962352,0.242112069,pos,ns,0.61598356,-0.0002934,0.000329256,-0.891101453,0.373565832,neg,ns,0.484656413,Tcerg1,Tcerg1_threeUTR,18,42574214,42574263,42574262,42574263,50,+,AGCCCCGCAGACTGAAGTCCTCTGTTCATCCACAGAACAGGTACAGCACG,3' UTR,18,42511487,42575793,64307,1,Tcerg1-209,62727,Gpr151-201;Tcerg1-209;Tcerg1-201;Tcerg1-202;Tcerg1-207,Gpr151;Tcerg1;Tcerg1;Tcerg1;Tcerg1,5389;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,12,56070,ENSMUSG00000024498,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7688,cg09008109,-0.00000341,0.000000845,-4.035865014,0.0000686,loss,ns,0.00000121,0.00000144,0.843142491,0.399798835,pos,ns,-0.000549398,0.00042043,-1.306752035,0.192265504,neg,ns,0.71609863,0.00000549,0.0000145,0.379515152,0.704565198,pos,ns,0.978568735,Slc25a27,Slc25a27_Exon,17,43664044,43664093,43664092,43664093,50,-,AAACTTACCAGCTAGAATCAAGATAAATACCTACGTGTCTGTAAATGGCG,"Exon (Slc25a27-201/Slc25a27, exon 2 of 9)",17,43641891,43667214,25324,2,Slc25a27-201,3121,Cyp39a1-201;Cyp39a1-204;Cyp39a1-203;Slc25a27-201;Slc25a27-202,Cyp39a1;Cyp39a1;Cyp39a1;Slc25a27;Slc25a27,-3332;-3417;-3432;0;3039,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,74011,ENSMUSG00000023912,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
238,cg13677823,0.00000931,0.00000373,2.493397882,0.013173877,gain,ns,-0.00000535,0.00000634,-0.843118482,0.399812241,neg,ns,-0.001318818,0.001857995,-0.709807287,0.478357209,neg,ns,0.320247676,0.0000768,0.0000639,1.201647656,0.230417262,pos,ns,0.914980119,Gm21992,Gm21992_Exon,19,4802537,4802586,4802585,4802586,50,+,GGGGCATACAGTACCTTTTCGACATGGCGACAGCCTTTTTGTAGGGATCG,"Exon (Rbm14-201/Rbm14, exon 2 of 3)",19,4742913,4811612,68700,2,Gm21992-203,9026,Gm21992-203;Gm21992-206;Gm21992-204;Gm21992-201;Gm21992-205;Gm21992-202;Rbm14-201;Rbm14-202;Rbm14-203,Gm21992;Gm21992;Gm21992;Gm21992;Gm21992;Gm21992;Rbm14;Rbm14;Rbm14,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,27,48,102902673,ENSMUSG00000096370,mapped to different genes,19,4802532,4802658,127,*,127,11,0.637795276,0.976923077,0.086614173,0.00000005,CpGisland,TRUE,U10,Tr-S
17254,cg15082058,0.0000889,0.00000748,11.88983825,4.11E-27,gain,yes,-0.0000107,0.0000127,-0.843068479,0.399840161,neg,ns,0.004042515,0.003721572,1.086238635,0.278217346,pos,ns,0.555615796,-0.000350817,0.000127985,-2.741090812,0.006478923,neg,ns,0.135085692,Efna3,Efna3_Exon,3,89316076,89316125,89316076,89316077,50,+,CGCAGCAGACGAACACCTTCATCCTCAGACACTTCCAGTGCAGGTTGTGA,"Exon (Gm15998-201/Gm15998-201, exon 2 of 3)",3,89313899,89322965,9067,2,Efna3-201,6840,Efna3-201;Efna3-203;Efna3-202,Efna3;Efna3;Efna3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,6,13638,ENSMUSG00000028039,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
20105,cg26781330,-6.11E-08,0.000000782,-0.078071026,0.937821922,loss,ns,0.00000112,0.00000133,0.843049327,0.399850855,pos,ns,-0.000305694,0.000389415,-0.785009331,0.433047603,neg,ns,0.363464361,0.0000142,0.0000134,1.063221838,0.288508876,pos,ns,0.984498006,Atf7,Atf7_fiveUTR,15,102593662,102593711,102593710,102593711,50,+,GTAAACGTACCTGTCCACAGCCCGGGGCATTGCACACAAACGGTCTGTCG,5' UTR,15,102525946,102625073,99128,2,Atf7-211,31362,Atf7-211;Atf7-210;Atf7-209;Atf7-202;Atf7-203;Atf7-205;Atf7-204;Atf7-206;Atf7-208;Atf7-213;Atf7-212;Atf7-207;Gm28047-201,Atf7;Atf7;Atf7;Atf7;Atf7;Atf7;Atf7;Atf7;Atf7;Atf7;Atf7;Atf7;Gm28047,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,11,223922,ENSMUSG00000099083,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25544,cg15892348,-0.00000848,0.00000595,-1.42597394,0.15488207,loss,ns,-0.00000852,0.0000101,-0.842837925,0.39996891,neg,ns,-0.003005299,0.002959846,-1.015356655,0.310727645,neg,ns,0.507620107,-0.000095,0.000101789,-0.933509894,0.351283286,neg,ns,0.727550988,Ebf3,Ebf3_Intron,7,137207017,137207066,137207065,137207066,50,+,CTTTATTATGGCTCTGCCTGACTCCAACAAAAACTGAGCCTGGAGGCCCG,"Intron (Ebf3-204/Ebf3, intron 10 of 15)",7,137193673,137314445,120773,2,Ebf3-204,107379,Ebf3-204;Ebf3-201;Ebf3-202;Ebf3-203;Ebf3-208;Ebf3-205,Ebf3;Ebf3;Ebf3;Ebf3;Ebf3;Ebf3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,62,84,13593,ENSMUSG00000010476,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4807,cg02561723,0.0000291,0.00000693,4.204785874,0.0000342,gain,ns,-0.00000992,0.0000118,-0.842725548,0.400031674,neg,ns,0.004700594,0.003447374,1.363528871,0.173705252,pos,ns,0.76018705,0.0000571,0.000118555,0.481477388,0.630516942,pos,ns,0.70126079,Cpa5,Cpa5_Intron,6,30628229,30628278,30628277,30628278,50,-,AACTAATGGCCTAAAGTGTTTCTCCATATTTGGGCAAAGCCACCTGGTCG,"Intron (Cpa5-201/Cpa5, intron 9 of 11)",6,30611010,30631745,20736,1,Cpa5-201,17219,Cpa5-201;Cpa5-202;Cpa5-203;Cpa5-204,Cpa5;Cpa5;Cpa5;Cpa5,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,74649,ENSMUSG00000029788,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23832,cg08687401,0.00000622,0.00000142,4.370959117,0.0000169,gain,ns,0.00000204,0.00000242,0.842722969,0.400033114,pos,ns,0.001221984,0.000707725,1.726637148,0.085229067,pos,ns,1.069412266,-0.00000571,0.0000243,-0.234746901,0.814560159,neg,ns,0.016945847,En1,En1_Promoter,1,120600013,120600062,120600013,120600014,50,-,CGTGGGCCGCGGGTGCATTTATCATCCCATTACTGTAACAAATCCGGGCT,Promoter (2-3kb),1,120602418,120607992,5575,1,En1-201,-2405,En1-201,En1,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,23,36,13798,ENSMUSG00000058665,conserved gene and region,1,120599977,120600103,127,*,127,10,0.503937008,1.241446725,0.078740158,0.000000615,CpGisland,TRUE,U13,Hc-P
22146,cg25803927,0.0000024,0.00000597,0.402385889,0.68767737,gain,ns,0.00000855,0.0000101,0.842695997,0.400048179,pos,ns,0.000732938,0.002971911,0.246621725,0.80536422,pos,ns,0.094007669,-0.000146473,0.000102204,-1.433145788,0.152823905,neg,ns,0.054682287,Mn1,Mn1_Promoter,5,111417238,111417287,111417286,111417287,50,-,GGCTGAAATTGATTGCTGAAATGCAAAACTTGTTGCTGCTTCTCCCGGCG,Promoter (<=1kb),5,111417362,111418073,712,1,Mn1-202,-124,Mn1-202;Mn1-201,Mn1;Mn1,-75;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,5,12,433938,ENSMUSG00000070576,conserved gene but different region,5,111417259,111417781,523,*,523,86,0.757170172,1.150832843,0.164435947,6.07E-87,CpGisland,TRUE,U3,Pr-B
12951,cg05001423,0.00000164,0.00000305,0.538335844,0.590731523,gain,ns,0.00000436,0.00000518,0.842687966,0.400052665,pos,ns,0.001524957,0.001516869,1.005332535,0.31552082,pos,ns,0.500971978,-0.0000757,0.0000522,-1.451721975,0.147590189,neg,ns,0.953037332,Fmr1,Fmr1_Exon,X,68710758,68710807,68710758,68710759,50,+,CGCGGTCCTGGATATACTTCAGGTACAAACTAAGCATTTTACTCAGTAAC,"Exon (Fmr1-201/Fmr1, exon 14 of 17)",20,68678541,68717963,39423,1,Fmr1-201,32217,Fmr1-201;Fmr1-212;Fmr1-213;Fmr1-205;Fmr1-203;Fmr1-204;Fmr1-206;Fmr1-202;Fmr1-211;Fmr1-208,Fmr1;Fmr1;Fmr1;Fmr1;Fmr1;Fmr1;Fmr1;Fmr1;Fmr1;Fmr1,0;32176;32176;0;0;0;0;0;15960;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,8,14265,ENSMUSG00000000838,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16938,cg13708495,0.00000176,0.00000538,0.326991007,0.743895367,gain,ns,-0.0000077,0.00000914,-0.842656613,0.400070178,neg,ns,0.001085021,0.002678395,0.405101216,0.685682521,pos,ns,0.163876921,-0.00012036,0.0000921,-1.306699033,0.192283489,neg,ns,0.891408704,Tafa5,Tafa5_Intergenic_upstream,15,87497754,87497803,87497754,87497755,50,-,CGATAGTCATAAAAAGGAAAATTGCATTTGCTTTGAGTGGGCAGAAGATA,Distal Intergenic,15,87544299,87759362,215064,1,Tafa5-202,-46545,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,106014,ENSMUSG00000054863,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26917,cg02681015,0.00010318,0.0000114,9.023039658,1.97E-17,gain,yes,-0.0000164,0.0000194,-0.842620764,0.400090203,neg,ns,0.011026334,0.005691386,1.937372488,0.053607976,pos,ns,1.270770588,-0.000211516,0.000195726,-1.08067058,0.280683673,neg,ns,0.102972533,Prdm16,Prdm16_fiveUTR,4,154636717,154636766,154636765,154636766,50,-,ACTTACTTTTGGCTAGCTTCCTCGCCCTCGCCTTGGATCGCATGGTGTCG,Promoter (<=1kb),4,154316125,154636866,320742,2,Prdm16-201,100,Prdm16-201;Prdm16-202;Prdm16-203;Prdm16-204;Prdm16-205;Prdm16-206;Prdm16-210;Prdm16-207;Prdm16-212,Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16,0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,32,70673,ENSMUSG00000039410,conserved gene and region,4,154635135,154636773,1639,*,1639,193,0.718730934,0.913086651,0.117754729,8.49E-161,CpGisland,TRUE,U3,Pr-B
16492,cg14904959,-0.0000409,0.0000114,-3.584288878,0.000392443,loss,ns,-0.0000163,0.0000194,-0.842577998,0.400114091,neg,ns,-0.00719865,0.005674781,-1.268533566,0.20555922,neg,ns,0.687063038,-0.000189925,0.000195155,-0.973201772,0.331211792,neg,ns,0.720040023,Gm21006,Gm21006_Intergenic_upstream,5,85177874,85177923,85177874,85177875,50,-,CGTTCTCTCTTAGTGAATATGACAAGCTCACCTGCTGTGGGAGGCTGAAA,Distal Intergenic,5,84866179,84866845,667,2,Gm21006-201,-311078,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,100526665,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
189,cg19391515,0.0000502,0.0000048,10.46578024,3.77E-22,gain,yes,-0.00000687,0.00000815,-0.842471782,0.400173427,neg,ns,-0.001662126,0.002389027,-0.695733606,0.487116912,neg,ns,0.312366792,0.0000442,0.0000822,0.537849345,0.591066971,pos,ns,0.831441558,Lrfn4,Lrfn4_Exon,19,4613156,4613205,4613156,4613157,50,+,CGGTAGATGAGGGTCTCATCTTCGCTGCTGTTGTACTGGATTTGGAACAT,"Exon (Lrfn4-202/Lrfn4, exon 2 of 3)",19,4611785,4615667,3883,2,Lrfn4-202,2462,Lrfn4-202;Lrfn4-201;Pcx-201;Pcx-204;Pcx-202,Lrfn4;Lrfn4;Pcx;Pcx;Pcx,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,225875,ENSMUSG00000045045,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15109,cg11689958,-0.000000159,0.00000041,-0.388404393,0.697983398,loss,ns,0.000000587,0.000000697,0.842447872,0.400186785,pos,ns,-0.000180997,0.000204259,-0.886112051,0.376244011,neg,ns,0.424530404,-0.000000585,0.00000702,-0.083332533,0.933640917,neg,ns,0.990795667,Zfp827,Zfp827_threeUTR,8,79189812,79189861,79189812,79189813,50,+,CGCCTGGGCAACCACTACAAGTGCGACCAGTGCGGCTACCTGTCCAAGAC,3' UTR,8,79028437,79193743,165307,1,Zfp827-202,161375,Zfp827-202;Zfp827-203;Zfp827-209;Zfp827-206;Zfp827-205;Zfp827-207;Zfp827-204,Zfp827;Zfp827;Zfp827;Zfp827;Zfp827;Zfp827;Zfp827,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,12,28,622675,ENSMUSG00000071064,conserved gene and region,8,79189795,79190007,213,*,213,16,0.61971831,0.797192983,0.075117371,1.49E-10,CpGisland,TRUE,U11,Tr-P
588,cg20263071,-0.0000234,0.00000433,-5.408975881,0.000000127,loss,yes,-0.0000062,0.00000736,-0.842398473,0.400214383,neg,ns,0.000265962,0.00215663,0.123323062,0.901931196,pos,ns,0.044826591,-0.0000489,0.0000742,-0.659058077,0.510347719,neg,ns,0.89739737,Macrod1,Macrod1_Intron,19,7138293,7138342,7138341,7138342,50,-,GCCATTAATTTACATTTTGATTCAACTTTCTTAATTTTACTTCAACTTCG,"Intron (Macrod1-201/Macrod1, intron 3 of 10)",19,7056810,7198057,141248,1,Macrod1-201,81483,Macrod1-201,Macrod1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,11,107227,ENSMUSG00000036278,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
21867,cg07167921,0.00000268,0.00000439,0.611807994,0.541113231,gain,ns,-0.00000628,0.00000745,-0.842385356,0.400221712,neg,ns,-0.004908033,0.00218296,-2.248338891,0.025256903,neg,ns,1.597619911,0.00020188,0.0000751,2.689163867,0.00755075,pos,ns,0.824606687,Gm1943,Gm1943_Intergenic_downstream,8,109310852,109310901,109310852,109310853,50,-,CGCAAAAGGGTCAAGTGCTAGAAAGTGCATAGCCATGCAGTTTGCATGGC,Distal Intergenic,8,109340691,109340864,174,2,Gm1943-201,30012,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,28,384864,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14188,cg07636504,0.0000318,0.00000431,7.382567263,1.44E-12,gain,yes,-0.00000616,0.00000732,-0.842328822,0.400253298,neg,ns,0.005164111,0.002144058,2.408568835,0.016598448,pos,ns,1.77993251,-0.000116694,0.0000737,-1.582636392,0.114524016,neg,ns,0.087781431,Gm28230,Gm28230_Intron,2,74736183,74736232,74736183,74736184,50,+,CGTGAAAGTTTCAGCCTCAATCAGTACAAGCTTCCCTCGGGGTCACGTGA,"Intron (Hoxd3-203/Hoxd3, intron 1 of 2)",2,74726728,74747918,21191,1,Gm28230-201,9455,Gm28230-201;Hoxd3-203;Hoxd3-205;Hoxd3-202;Hoxd3-201,Gm28230;Hoxd3;Hoxd3;Hoxd3;Hoxd3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,23,,NA,mapped to different genes,2,74736090,74736344,255,*,255,15,0.576470588,0.712025317,0.058823529,1.87E-08,CpGisland,TRUE,U13,Hc-P
4974,cg04150055,0.0001003,0.00000776,12.92947404,7.04E-31,gain,yes,-0.0000111,0.0000132,-0.8421172,0.400371548,neg,ns,0.00793089,0.003860989,2.054108332,0.040803477,pos,ns,1.389302826,-0.0000604,0.000132779,-0.455249196,0.649248649,neg,ns,0.09047872,Prdm12,Prdm12_Exon,2,31636973,31637022,31637021,31637022,50,-,CGATATACTGAGGGCCTCTCTATTAACGCCCATGAATATTAAAGAGATCG,Promoter (3-4kb),2,31640037,31655795,15759,1,Prdm12-201,-3064,Prdm12-201,Prdm12,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,10,381359,ENSMUSG00000079466,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
4610,cg26504436,0.0000263,0.0000119,2.218047723,0.027276094,gain,ns,0.000017,0.0000202,0.842051547,0.400408237,pos,ns,0.014192742,0.005907581,2.402462416,0.016872873,pos,ns,1.772810961,-0.00065947,0.000203161,-3.246043485,0.001298236,neg,ns,0.536700224,Ntm,Ntm_Intron,9,29942253,29942302,29942253,29942254,50,-,CGCTGGTAGAAAATTCATTTTAGATTTGCTATTTATAAAGTACTCAGTAC,"Intron (Ntm-201/Ntm, intron 1 of 7)",9,28994750,29963129,968380,2,Ntm-201,20827,Ntm-201;Ntm-204;Ntm-210;Ntm-207;Ntm-209,Ntm;Ntm;Ntm;Ntm;Ntm,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,27,32,235106,ENSMUSG00000059974,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25928,cg07018671,0.00000813,0.00000331,2.453918599,0.014680754,gain,ns,-0.00000474,0.00000563,-0.84203845,0.400415556,neg,ns,-0.002383641,0.001649717,-1.44487868,0.149501993,neg,ns,0.825353017,0.0000939,0.0000567,1.655005912,0.098935303,pos,ns,0.911311986,Ptdss2,Ptdss2_threeUTR,7,141152822,141152871,141152870,141152871,50,+,GTTCGAGTTCCTGGAGTACAGCCTGGAGCACCAGCTGCCCAACTTCAGCG,3' UTR,7,141122382,141154456,32075,1,Ptdss2-207,30440,Ptdss2-207;Ptdss2-203;Ptdss2-202;Ptdss2-201;Ptdss2-209;Ptdss2-210,Ptdss2;Ptdss2;Ptdss2;Ptdss2;Ptdss2;Ptdss2,0;0;0;0;0;-1752,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,27388,ENSMUSG00000025495,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15888,cg09915899,0.00000524,0.000004,1.312246886,0.190407645,gain,ns,-0.00000572,0.00000679,-0.841978339,0.400449151,neg,ns,-0.003541119,0.001988997,-1.780354217,0.075997337,neg,ns,1.119201626,0.000138606,0.0000684,2.026358074,0.043584036,pos,ns,0.926161876,Ccdc171,Ccdc171_threeUTR,4,83743060,83743109,83743060,83743061,50,+,CGCATGGCAGCCAAGTGAGCATTTGGACCTTGGGGAGATCACTTAAAACA,3' UTR,4,83525545,83864670,339126,1,Ccdc171-201,217515,Ccdc171-201;Ccdc171-206;Ccdc171-203;Ccdc171-205,Ccdc171;Ccdc171;Ccdc171;Ccdc171,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,9,320226,ENSMUSG00000052407,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3956,cg20250878,-0.0000596,0.0000106,-5.62661614,4.11E-08,loss,yes,0.0000152,0.000018,0.841940057,0.400470547,pos,ns,-0.014628808,0.005272616,-2.774487868,0.005864306,neg,ns,2.231783384,0.000253729,0.000181325,1.399307119,0.162720705,pos,ns,0.780591116,Gm7847,Gm7847_Intergenic_upstream,18,25905043,25905092,25905043,25905044,50,+,CGGCAAAGACAGATACTTCCCAGATTCTTATTAATCTCCAAGAGTTATGG,Distal Intergenic,18,25823581,25824357,777,2,Gm7847-201,-80686,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,22,665916,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22197,cg04021995,-0.0000155,0.00000837,-1.853667165,0.064736648,loss,ns,0.000012,0.0000142,0.841910212,0.400487228,pos,ns,-0.003161885,0.004166125,-0.75895101,0.448458535,neg,ns,0.348277706,0.0000325,0.000143273,0.227173078,0.820438902,pos,ns,0.889138373,Gm26897,Gm26897_Promoter,5,111725203,111725252,111725251,111725252,50,+,TAAATTAAAGAACTCTCTCCTAGTTATTGCCGTCTCAATTATAACTGTCG,Promoter (8-9kb),5,111733924,111734574,651,1,Gm26897-201,-8672,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,23,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7366,cg06440786,0.0000353,0.00000914,3.860666716,0.000137641,gain,ns,-0.0000131,0.0000155,-0.84190017,0.400492841,neg,ns,0.008288161,0.004546972,1.822786669,0.069298838,pos,ns,1.15927405,-0.000264894,0.00015637,-1.694020324,0.091265811,neg,ns,0.028295904,Pou4f3,Pou4f3_fiveUTR,18,42395211,42395260,42395211,42395212,50,+,CGTTCAAGCCCGACGCCACCTACCATACCATGAGCAGCGTGCCCTGCACG,Promoter (<=1kb),18,42394539,42397249,2711,1,Pou4f3-201,672,Pou4f3-201;Pou4f3-202,Pou4f3;Pou4f3,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,7,17,18998,ENSMUSG00000024497,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
23433,cg05917570,0.0000437,0.00000456,9.577170934,3.35E-19,gain,yes,-0.00000652,0.00000775,-0.841731513,0.400587115,neg,ns,0.007056319,0.002270729,3.107512469,0.002061454,pos,ns,2.685826414,-0.000201131,0.0000781,-2.575626399,0.010468936,neg,ns,0.066315502,Dpyd,Dpyd_Exon,3,118433691,118433740,118433691,118433692,50,+,CGAGTTATGGATTTATGGTCCCGGTCAAGCTCAGCCCATCCCCAGGCAGG,"Exon (Gm26871-202/Gm26871-202, exon 3 of 3)",3,118562129,119432924,870796,1,Dpyd-201,-128389,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,29,99586,ENSMUSG00000033308,mapped to different genes,3,118433691,118434190,500,*,500,37,0.624,0.795801609,0.074,1.85E-23,CpGisland,TRUE,U3,Pr-B
13129,cg08778701,-0.0000168,0.0000068,-2.466115623,0.014199678,loss,ns,0.00000972,0.0000115,0.841655177,0.400629788,pos,ns,-0.004596223,0.003382177,-1.358954205,0.175148976,neg,ns,0.756592398,0.000333573,0.000116313,2.867895438,0.00441542,pos,ns,0.810850103,Gm7627,Gm7627_Intron,7,69544313,69544362,69544361,69544362,50,+,CATTATTCTTTCCAACTGCACTGATAATCGGGACAGCTTAAACATTTTCG,"Intron (4930402F11Rik-203/4930402F11Rik-203, intron 3 of 3)",7,69605842,69606840,999,2,Gm7627-201,62478,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,11,665410,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22340,cg08901754,-0.000000117,0.00000181,-0.064738314,0.948424083,loss,ns,-0.00000259,0.00000308,-0.841551299,0.400687864,neg,ns,0.002524188,0.000901358,2.800427606,0.005423913,pos,ns,2.265687254,-0.0000425,0.000031,-1.372367224,0.170941282,neg,ns,0.957067416,Brpf1,Brpf1_Exon,6,113318436,113318485,113318484,113318485,50,+,AAAAAGCCCATGGACTTTTTCACCATGAAGCAGAACTTGGAGGCTTACCG,"Exon (Brpf1-204/Brpf1, exon 7 of 14)",6,113307137,113324857,17721,1,Brpf1-204,11299,Brpf1-204;Brpf1-209;Brpf1-203;Brpf1-202;Brpf1-201;Brpf1-210;Brpf1-208;Brpf1-205;Brpf1-207;Brpf1-206,Brpf1;Brpf1;Brpf1;Brpf1;Brpf1;Brpf1;Brpf1;Brpf1;Brpf1;Brpf1,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,16,78783,ENSMUSG00000001632,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23731,cg23606623,0.00000073,0.00000179,0.407570013,0.683870696,gain,ns,-0.00000256,0.00000304,-0.841536314,0.400696241,neg,ns,0.000880058,0.000891607,0.987046731,0.32438949,pos,ns,0.488933225,-0.0000332,0.0000307,-1.081556063,0.280290461,neg,ns,0.036183111,Bahcc1,Bahcc1_Exon,11,120236491,120236540,120236539,120236540,50,+,GCTTCGCAGATTTGGGTTTTTATCACCCAGCAGAGCCAGCAGCCTCTTCG,"Exon (Bahcc1-204/Bahcc1, exon 1 of 2)",11,120232947,120292282,59336,1,Bahcc1-203,3544,Bahcc1-203;Bahcc1-201;Bahcc1-204;Bahcc1-202,Bahcc1;Bahcc1;Bahcc1;Bahcc1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,11,268515,ENSMUSG00000039741,conserved gene but different region,11,120236539,120236815,277,*,277,35,0.714801444,1.00937012,0.126353791,8.09E-31,CpGisland,TRUE,U1,Pr-A
9774,cg24260009,0.00000362,0.0000111,0.326646265,0.744155874,gain,ns,0.0000158,0.0000188,0.84153611,0.400696356,pos,ns,-0.000148208,0.005508435,-0.026905646,0.978552302,neg,ns,0.009415957,0.0000754,0.000189435,0.398050506,0.690866941,pos,ns,0.529754276,Nell1,Nell1_Exon,7,50826312,50826361,50826312,50826313,50,-,CGTTAACCTGCCAGGGTGGTACCACTGTGAGTGCAGAAGCGGTTTCCATG,"Exon (Nell1-201/Nell1, exon 16 of 20)",7,49974864,50866608,891745,1,Nell1-201,851448,Nell1-201;Nell1-202,Nell1;Nell1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,6,338352,ENSMUSG00000055409,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16036,cg23423392,0.0000032,0.0000048,0.666978425,0.505282049,gain,ns,-0.00000686,0.00000815,-0.841511929,0.400709875,neg,ns,-0.00060401,0.002388048,-0.252930475,0.800489578,neg,ns,0.096644318,-0.0000797,0.0000821,-0.970217842,0.332694293,neg,ns,0.918146316,Bnc2,Bnc2_Intergenic_downstream,4,84274681,84274730,84274681,84274682,50,-,CGGTTTTCTGGTGGCCAACAAATTGGCCTGTGGTTATGTTGAGTGACTAA,Distal Intergenic,4,84275380,84291757,16378,2,Bnc2-218,17076,Bnc2-201;Bnc2-202;Bnc2-214;Bnc2-218;Bnc2-215;Bnc2-222;Bnc2-216;Bnc2-213;Bnc2-219,Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2,0;0;0;0;0;0;0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,91,242509,ENSMUSG00000028487,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1897,cg07415935,-0.00000283,0.00000165,-1.718550093,0.086694719,loss,ns,0.00000235,0.0000028,0.841453011,0.400742818,pos,ns,0.000313293,0.00081945,0.382321307,0.702485026,pos,ns,0.153362929,0.0000145,0.0000282,0.515223921,0.606763751,pos,ns,0.054524313,Bicra,Bicra_fiveUTR,7,16047868,16047917,16047916,16047917,50,-,AGAAATTGCTACATTGTGAGAAACTCACCCTGATGTTTGAGCAGCCGTCG,Promoter (<=1kb),7,15970672,16047921,77250,2,Bicra-204,4,Bicra-204,Bicra,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,6,243842,ENSMUSG00000070808,conserved gene and region,7,16047913,16048113,201,*,201,34,0.835820896,0.971981226,0.169154229,4.33E-35,CpGisland,TRUE,U1,Pr-A
21284,cg03284468,-0.0000128,0.00000555,-2.313608688,0.021343108,loss,ns,-0.00000793,0.00000942,-0.84141829,0.400762232,neg,ns,-0.007261504,0.002759963,-2.631014705,0.008938514,neg,ns,2.048734681,-0.0000675,0.0000949,-0.711656119,0.477212927,neg,ns,0.782401733,Gm5187,Gm5187_Intron,12,107093565,107093614,107093613,107093614,50,-,CTATCAGACCAACTTGGATTGCCATCTGGCCCACACATTTTCCTGGCACG,"Intron (Gm16086-201/Gm16086-201, intron 1 of 2)",12,107205076,107206066,991,2,Gm5187-201,112501,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,10,382635,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7701,cg20275043,0.0000385,0.0000136,2.839786717,0.004812789,gain,ns,-0.0000194,0.000023,-0.841276504,0.400841517,neg,ns,0.005965047,0.006744853,0.884385039,0.377173793,pos,ns,0.423458491,-0.0000747,0.000231955,-0.322178801,0.747534401,neg,ns,0.565405143,Arhgap15,Arhgap15_Intron,2,43786209,43786258,43786257,43786258,50,-,CTAATTATGTAGATGACACATTTGTCAGACCTTGACTGCCATTAGAAACG,"Intron (Arhgap15-203/Arhgap15, intron 2 of 14)",2,43748824,44395953,647130,1,Arhgap15-203,37385,Arhgap15-203;Arhgap15-202;Arhgap15-205;Arhgap15-201,Arhgap15;Arhgap15;Arhgap15;Arhgap15,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,72,78,76117,ENSMUSG00000049744,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19157,cg01416702,-0.00000863,0.00000467,-1.847812377,0.065581955,loss,ns,0.00000667,0.00000793,0.841235903,0.400864223,pos,ns,0.000654857,0.002323755,0.281809742,0.778277433,pos,ns,0.108865562,-0.0000763,0.0000799,-0.954689077,0.340478805,neg,ns,0.874837125,Mrps22,Mrps22_Intergenic_upstream,9,98708018,98708067,98708018,98708019,50,+,CGGTTTCTCTGGGACTTTATTAAAATGTTTGTGACGGAGCCAATGTAAAC,Distal Intergenic,9,98588730,98601660,12931,2,Mrps22-201,-106358,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,6,64655,ENSMUSG00000032459,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11136,cg07262346,-0.0000886,0.0000111,-8.012175605,2.31E-14,loss,yes,0.0000158,0.0000188,0.840786246,0.401115737,pos,ns,-0.015893148,0.005502583,-2.888306847,0.004145851,neg,ns,2.382386325,0.000288622,0.000189233,1.525216374,0.128224675,pos,ns,0.814007226,Lingo1,Lingo1_Intron,9,56706797,56706846,56706797,56706798,50,+,CGTCTTCAAAGAGCAGAGGCATTAAAAATTGAAATCATAAAATAGACACG,"Intron (Lingo1-206/Lingo1, intron 3 of 6)",9,56618475,56796138,177664,2,Lingo1-206,89292,Lingo1-206;Lingo1-205;Lingo1-207;Lingo1-204;Lingo1-208,Lingo1;Lingo1;Lingo1;Lingo1;Lingo1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,25,235402,ENSMUSG00000049556,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4431,cg09612170,0.00000988,0.0000116,0.850070281,0.395942064,gain,ns,0.0000166,0.0000198,0.840753421,0.401134101,pos,ns,0.0000699,0.005786358,0.012076021,0.990372732,pos,ns,0.004201326,-0.000150954,0.000198992,-0.758592246,0.44867287,neg,ns,0.650784763,Gm20096,Gm20096_Intron,18,28894353,28894402,28894353,28894354,50,-,CGTCATTATTCAGTGTAAAACTCCTTTAACCTGGTGGAGTTGTTGCTCTT,"Intron (Gm33948-201/Gm33948-201, intron 1 of 2)",18,28602648,28602989,342,2,Gm20096-201,-291413,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,3,100504163,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14810,cg05822239,0.0000264,0.0000119,2.230570569,0.026424953,gain,ns,-0.0000169,0.0000201,-0.840745603,0.401138476,neg,ns,-0.005006219,0.005899645,-0.848562817,0.396779357,neg,ns,0.401450931,-0.000179967,0.000202888,-0.887023365,0.375753956,neg,ns,0.653016846,Myo18a,Myo18a_Intergenic_downstream,11,77867749,77867798,77867797,77867798,50,+,GCAAAGACACTTAGCGATTTGCTCCTTAATTGTCCCCCAGCTAGGCTGCG,Distal Intergenic,11,77857479,77865076,7598,1,Myo18a-216,10270,Myo18a-208;Myo18a-209;Myo18a-207;Myo18a-201;Myo18a-203;Myo18a-222;Myo18a-223;Myo18a-211;Myo18a-205;Myo18a-210;Myo18a-224;Myo18a-202;Myo18a-220;Myo18a-221;Myo18a-215;Myo18a-216,Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,18,360013,ENSMUSG00000000631,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19292,cg19584241,0.0000036,0.00000118,3.053477018,0.002458142,gain,ns,-0.00000169,0.00000201,-0.840742835,0.401140024,neg,ns,0.000733962,0.000587493,1.249312023,0.212493441,pos,ns,0.67265447,-0.0000116,0.0000202,-0.576338431,0.564804658,neg,ns,0.970953839,Foxp1,Foxp1_Exon,6,98941509,98941558,98941557,98941558,50,+,TAAGAAGTTCAAACATGGTGGACGTACCCACTGATCTTTTGTGGCCTTCG,"Exon (Foxp1-206/Foxp1, exon 15 of 18)",6,98925338,99266515,341178,2,Foxp1-206,324957,Foxp1-206;Foxp1-204;Foxp1-220;Foxp1-230;Foxp1-225;Foxp1-201;Foxp1-205;Foxp1-207;Foxp1-208;Foxp1-226;Foxp1-228;Foxp1-221;Foxp1-222;Foxp1-210,Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,87,108655,ENSMUSG00000030067,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4896,cg14049329,-0.0000154,0.0000075,-2.048509456,0.041351986,loss,ns,0.0000107,0.0000127,0.840716722,0.401154634,pos,ns,-0.006584448,0.003733394,-1.76366292,0.078773767,neg,ns,1.103618383,0.0000511,0.000128391,0.397916632,0.690965522,pos,ns,0.884093947,Zfp513,Zfp513_Exon,5,31200379,31200428,31200427,31200428,50,+,CCAGGCTGCTGCAGGCAAAGGGGCAGTGGGGACAGCGGTAGGGCTTCTCG,"Exon (Zfp513-202/Zfp513, exon 3 of 4)",5,31198981,31202303,3323,2,Zfp513-202,1875,Ppm1g-205;Ppm1g-201;Ppm1g-206;Ppm1g-203;Ppm1g-204;Snx17-201;Snx17-205;Snx17-202;Snx17-204;Snx17-210;Snx17-208;Snx17-207;Snx17-211;Snx17-209;Snx17-206;Snx17-203;Zfp513-202;Zfp513-201;Zfp513-205;Zfp513-207;Zfp513-203;Zfp513-204;Zfp513-208;Zfp513-206,Ppm1g;Ppm1g;Ppm1g;Ppm1g;Ppm1g;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Zfp513;Zfp513;Zfp513;Zfp513;Zfp513;Zfp513;Zfp513;Zfp513,0;0;4655;0;0;0;0;0;0;0;0;0;5536;0;0;0;0;0;0;-93;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,15,15,101023,ENSMUSG00000043059,conserved gene and region,5,31200414,31200657,244,*,244,21,0.68442623,0.738115817,0.086065574,6.37E-15,CpGisland,TRUE,NA,NRS
2810,cg16785087,-0.00000123,0.0000113,-0.109085773,0.913205036,loss,ns,0.0000161,0.0000191,0.840664641,0.401183773,pos,ns,-0.003548129,0.005601271,-0.633450693,0.526906427,neg,ns,0.278266504,-0.0000333,0.000192627,-0.173037704,0.862734716,neg,ns,0.869534288,Ccdc178,Ccdc178_Intron,18,21872473,21872522,21872521,21872522,50,-,CACATCATTAGCAACATGAAACAAAGACACATGCTTGACTTTAATAAGCG,"Intron (Ccdc178-204/Ccdc178, intron 22 of 23)",18,21810893,22171442,360550,2,Ccdc178-204,298920,Ccdc178-204;Ccdc178-201;Ccdc178-202,Ccdc178;Ccdc178;Ccdc178,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,19,21,70950,ENSMUSG00000024306,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13337,cg01509675,-0.0000321,0.00000558,-5.748793939,2.15E-08,loss,yes,0.00000796,0.00000947,0.84048573,0.401283883,pos,ns,-0.008314806,0.002775375,-2.995921432,0.002956958,neg,ns,2.529154836,0.00026733,0.0000954,2.800877779,0.005416543,pos,ns,0.915564997,0610010K14Rik,0610010K14Rik_Exon,11,70234725,70234774,70234725,70234726,50,-,CGCCCCAGCAGCACACTGTGGTTTGTACGGCACTGTGGCCACGTCCAAAC,"Exon (Mir497-201/Mir497-201, exon 1 of 1)",11,70235206,70236196,991,2,0610010K14Rik-211,1471,0610010K14Rik-211;0610010K14Rik-210;0610010K14Rik-205;0610010K14Rik-209;0610010K14Rik-202;0610010K14Rik-204;0610010K14Rik-208;0610010K14Rik-207;0610010K14Rik-203;0610010K14Rik-213;0610010K14Rik-212;0610010K14Rik-206;0610010K14Rik-201;0610010K14Rik-214;Bcl6b-201;Bcl6b-202;Gm21988-201;Gm21988-202;Rnasek-202;Rnasek-201;Rnasek-203,0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;Bcl6b;Bcl6b;Gm21988;Gm21988;Rnasek;Rnasek;Rnasek,1422;0;0;0;0;0;0;0;0;0;0;0;0;0;-4986;-4927;0;0;5006;5068;4284,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,9,104457,ENSMUSG00000020831,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13108,cg25217825,-0.00000628,0.00000367,-1.709264509,0.088402735,loss,ns,-0.00000524,0.00000624,-0.840450759,0.401303453,neg,ns,-0.0000203,0.001827535,-0.011115412,0.991138516,neg,ns,0.003865647,0.0000111,0.0000628,0.177299829,0.859388673,pos,ns,0.926556756,Gm5216,Gm5216_Intergenic_downstream,15,69499591,69499640,69499591,69499592,50,-,CGATCAATGGCTATCAGCAGTTCTTGTGAGAGGGCAGAATAATTTGATGG,Distal Intergenic,15,70063061,70064669,1609,2,Gm5216-201,565078,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,383050,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4229,cg27656498,-0.00000297,0.00000302,-0.983361587,0.326196354,loss,ns,0.00000431,0.00000513,0.840441562,0.4013086,pos,ns,0.002496925,0.001503935,1.660261713,0.097872933,pos,ns,1.009337396,-0.000148733,0.0000517,-2.87571556,0.004310309,neg,ns,0.93433534,Trio,Trio_threeUTR,15,27744055,27744104,27744055,27744056,50,+,CGGAACACCAGAAACATGTTCTGCTGGTTGCTGGCCAGAATTTGAACGAC,3' UTR,15,27730651,28025848,295198,2,Trio-201,281744,Trio-212;Trio-201;Trio-208;Trio-206;Trio-214;Trio-211;Trio-205,Trio;Trio;Trio;Trio;Trio;Trio;Trio,-1732;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,8,11,223435,ENSMUSG00000022263,conserved gene and region,15,27743899,27744056,158,*,158,12,0.64556962,0.736024845,0.075949367,4.47E-08,CpGisland,TRUE,U10,Tr-S
2361,cg20099443,0.0000172,0.00000474,3.620699425,0.000343075,gain,ns,0.00000677,0.00000806,0.840395679,0.401334277,pos,ns,0.000170361,0.002360949,0.072157771,0.942522883,pos,ns,0.025708097,0.0000438,0.0000812,0.539248683,0.590102346,pos,ns,0.090287978,Tfap2d,Tfap2d_Intron,1,19111310,19111359,19111358,19111359,50,+,CTGCAGAGATCATATTAATGTTGTACGTACAGAGTGGAGCTTTGCCTTCG,"Intron (Tfap2d-201/Tfap2d, intron 3 of 7)",1,19103022,19166346,63325,1,Tfap2d-201,8288,Tfap2d-201;Tfap2d-202,Tfap2d;Tfap2d,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,23,226896,ENSMUSG00000042596,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19856,cg25356107,-0.0000186,0.0000171,-1.090049183,0.276538061,loss,ns,0.0000244,0.000029,0.840278627,0.401399787,pos,ns,-0.017184522,0.008508158,-2.019769986,0.044267289,neg,ns,1.353917078,0.000336444,0.000292595,1.149862468,0.251086814,pos,ns,0.367746985,Cycs-ps2,Cycs-ps2_Intergenic_downstream,5,101323346,101323395,101323346,101323347,50,-,CGGGGTGTCAAGCCACGATGAATTGGTTAGTACAGGCATGTTTATAGACT,Distal Intergenic,5,101305578,101305869,292,1,Cycs-ps2-201,17817,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,10,13065,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7543,cg23752476,-0.00000419,0.00000181,-2.316492088,0.021183179,loss,ns,-0.00000258,0.00000308,-0.840151515,0.401470935,neg,ns,0.001389396,0.000901023,1.542020346,0.124088794,pos,ns,0.906267435,-0.0000697,0.000031,-2.249625094,0.025174121,neg,ns,0.936882482,Zbtb20,Zbtb20_Intron,16,43098373,43098422,43098373,43098374,50,-,CGGTGAATGGCATAGCTAGATGGGGGTAGTCACGGCAGTCATTCCTTATT,"Intron (Zbtb20-209/Zbtb20, intron 3 of 7)",16,42875881,43463175,587295,1,Zbtb20-209,222492,Zbtb20-209;Zbtb20-211;Zbtb20-217;Zbtb20-218;Zbtb20-204,Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,98,56490,ENSMUSG00000022708,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2201,cg15109689,-0.00000614,0.00000297,-2.072167176,0.039076327,loss,ns,-0.00000423,0.00000504,-0.840132061,0.401481824,neg,ns,-0.002641845,0.001475803,-1.790107654,0.074412427,neg,ns,1.128354528,0.0000706,0.0000508,1.391813289,0.164976732,pos,ns,0.94127876,Pou6f2,Pou6f2_Intergenic_upstream,13,18488282,18488331,18488282,18488283,50,-,CGGCAAGTGACAAACAATTTACTTTACATGCCACACTTTTATGGGTTTTG,Distal Intergenic,13,18346225,18397686,51462,2,Pou6f2-208,-90645,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,18,218030,ENSMUSG00000009734,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13888,cg14032567,0.0000779,0.0000119,6.552442181,2.36E-10,gain,yes,0.000017,0.0000202,0.840051117,0.401527135,pos,ns,0.004030774,0.005918288,0.681071069,0.496334943,pos,ns,0.304225148,0.000187396,0.000203529,0.920733505,0.357905523,pos,ns,0.237647292,Sp9,Sp9_Promoter,2,73269120,73269169,73269120,73269121,50,+,CGCTATAATAGAGCATTATTTGGCCGTTTTGAATAATGTAAAGCGTTTGC,Promoter (2-3kb),2,73271925,73277471,5547,1,Sp9-201,-2756,Sp9-201;Sp9-202,Sp9;Sp9,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,6,21,381373,ENSMUSG00000068859,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
16193,cg03603997,0.0000328,0.00000889,3.69462358,0.000260248,gain,ns,0.0000127,0.0000151,0.840006068,0.401552354,pos,ns,0.004944941,0.004424704,1.117575574,0.264613665,pos,ns,0.577387732,-0.000154843,0.000152165,-1.017599988,0.30966161,neg,ns,0.221333533,Gm26913,Gm26913_Intergenic_downstream,13,84571638,84571687,84571686,84571687,50,-,AGACGTCCTGCCACTGAGGCTTGGGCTGCAGTAACTTGAAGGGCCAAACG,Distal Intergenic,13,84690210,84690941,732,2,Gm26913-201,119303,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,9,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16855,cg22117285,-0.000000793,0.000000809,-0.980804508,0.327453973,loss,ns,0.00000115,0.00000137,0.839890937,0.40161681,pos,ns,0.000902687,0.000402404,2.243236536,0.025587634,pos,ns,1.591969864,-0.0000275,0.0000138,-1.989742342,0.047497615,neg,ns,0.970513709,Dennd4c,Dennd4c_Exon,4,86795234,86795283,86795282,86795283,50,+,TTGATCTTCATGACCCACCACAAGATGTTGTTTGCATTGACTTGGATACG,"Exon (Dennd4c-201/Dennd4c, exon 10 of 26)",4,86748555,86830167,81613,1,Dennd4c-201,46679,Dennd4c-201;Dennd4c-202;Dennd4c-204,Dennd4c;Dennd4c;Dennd4c,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,329877,ENSMUSG00000038024,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20221,cg07940754,0.00000817,0.00000172,4.738437594,0.00000329,gain,ns,0.00000246,0.00000293,0.839873303,0.401626682,pos,ns,0.001219601,0.000858323,1.420911373,0.156347607,pos,ns,0.805908762,-0.000000593,0.0000295,-0.02008493,0.983988543,neg,ns,0.010039446,Hoxc11,Hoxc11_fiveUTR,15,102954520,102954569,102954568,102954569,50,-,AGAACGATGTTTAACTCGGTCAACCTGGGCAACTTCTGCTCTCCGTCGCG,Promoter (<=1kb),15,102954427,102957708,3282,1,Hoxc11-201,93,Hoxc11-201,Hoxc11,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,24,109663,ENSMUSG00000001656,mapped to different genes,15,102954221,102954599,379,*,379,28,0.519788918,1.094020619,0.073878628,6.96E-18,CpGisland,TRUE,U13,Hc-P
8262,cg02343568,0.0000124,0.00000734,1.685997353,0.092802459,gain,ns,-0.0000105,0.0000125,-0.839785868,0.401675638,neg,ns,-0.004500858,0.0036545,-1.231593231,0.219034514,neg,ns,0.659487446,0.000139095,0.000125678,1.106754749,0.269258054,pos,ns,0.687462438,Zcchc7,Zcchc7_Intron,4,44905908,44905957,44905956,44905957,50,+,AACATATTTCCTGAAAGCCCTGTCACTCATCACAGCTACATTTTCTCCCG,"Intron (Zcchc7-203/Zcchc7, intron 5 of 8)",4,44756568,44932203,175636,1,Zcchc7-203,149340,Zcchc7-203;Zcchc7-207;Zcchc7-205;Zcchc7-201;Zcchc7-202,Zcchc7;Zcchc7;Zcchc7;Zcchc7;Zcchc7,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,27,27,319885,ENSMUSG00000035649,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
3525,cg24370741,0.0000026,0.00000231,1.123609754,0.26204798,gain,ns,0.0000033,0.00000393,0.839750835,0.401695254,pos,ns,0.002033523,0.001152025,1.765173071,0.078519204,pos,ns,1.105024111,-0.0000943,0.0000396,-2.380861118,0.017876024,neg,ns,0.951203212,Gm12067,Gm12067_Intergenic_downstream,11,24371323,24371372,24371323,24371324,50,+,CGGGGACTTGCATTCGCTTGATACTCAATTATACATTAGTGTACATCACT,Distal Intergenic,11,24552438,24553962,1525,2,Gm12067-201,182590,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,58,100417843,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8631,cg19916874,-0.0000768,0.0000116,-6.649271579,1.33E-10,loss,yes,0.0000165,0.0000196,0.839645265,0.40175437,pos,ns,-0.006790277,0.005749368,-1.181047572,0.238489138,neg,ns,0.622531396,0.000292478,0.00019772,1.479253588,0.140087986,pos,ns,0.88947103,Btrc,Btrc_Intron,19,45474814,45474863,45474814,45474815,50,-,CGGTAATTAAGATCTACAATTCACAATGCAGACGTTTGCACTTCCTCTGG,"Intron (Btrc-204/Btrc, intron 1 of 2)",19,45363734,45507736,144003,1,Btrc-204,111080,Btrc-204;Btrc-201;Btrc-210;Btrc-202;Btrc-203;Btrc-209,Btrc;Btrc;Btrc;Btrc;Btrc;Btrc,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,63,98,12234,ENSMUSG00000025217,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20998,cg25520488,-0.00000504,0.00000374,-1.349550173,0.178145032,loss,ns,-0.00000533,0.00000635,-0.839478303,0.401847873,neg,ns,-0.001362393,0.00185907,-0.732835562,0.464212484,neg,ns,0.333283184,0.00000413,0.0000639,0.064521787,0.948596346,pos,ns,0.935714286,Tanc2,Tanc2_threeUTR,11,105923594,105923643,105923594,105923595,50,+,CGGACTCTACCTGTGGCTCAGGCATACCAGGACAACCTGTACAGGCAGCT,3' UTR,11,105589991,105929304,339314,1,Tanc2-202,333603,Tanc2-202;Tanc2-204;Tanc2-201,Tanc2;Tanc2;Tanc2,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,20,77097,ENSMUSG00000053580,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8171,cg05265270,-0.0000325,0.00000758,-4.288824379,0.000024,loss,ns,-0.0000108,0.0000129,-0.839262379,0.401968816,neg,ns,-0.007453754,0.003770507,-1.976856975,0.048943677,neg,ns,1.310303405,0.0000369,0.000129667,0.284334553,0.776343841,pos,ns,0.790247213,Pax2,Pax2_Intron,19,44817537,44817586,44817585,44817586,50,+,CCTAATTTGCAGCTAATTACAAAACTGATTTCTACAGGAAGATCAATACG,"Intron (Pax2-203/Pax2, intron 6 of 9)",19,44756045,44837851,81807,1,Pax2-203,61492,Pax2-203;Pax2-201;Pax2-202,Pax2;Pax2;Pax2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,35,166,18504,ENSMUSG00000004231,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18664,cg09254127,-0.00000386,0.0000015,-2.564329329,0.010808439,loss,ns,-0.00000214,0.00000256,-0.839238893,0.401981972,neg,ns,-0.000220201,0.00074859,-0.294154344,0.768836826,neg,ns,0.114165823,-0.0000127,0.0000257,-0.493423906,0.622062467,neg,ns,0.970481267,Skap1,Skap1_Intron,11,96634149,96634198,96634197,96634198,50,-,AATTTACACCCAGCATTTATTCTGGAAATTACAGTATCGTGCAGTTAACG,"Intron (Skap1-204/Skap1, intron 4 of 12)",11,96464593,96758941,294349,1,Skap1-204,169556,Skap1-204;Skap1-203;Skap1-209;Skap1-201;Skap1-206;Skap1-208,Skap1;Skap1;Skap1;Skap1;Skap1;Skap1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,40,46,78473,ENSMUSG00000057058,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13302,cg09607471,0.0000279,0.00000254,10.98234683,6.40E-24,gain,yes,-0.00000362,0.00000431,-0.839095046,0.402062558,neg,ns,0.000947653,0.001263449,0.750051974,0.453792267,pos,ns,0.343142909,0.0000479,0.0000434,1.102040547,0.271298907,pos,ns,0.083105543,Egr3,Egr3_Promoter,14,70076761,70076810,70076761,70076762,50,+,CGGCCCGCTTCCTGCTTTCTAATGTTCCATTGTGAGGAGCTTCCATTGTG,Promoter (<=1kb),14,70077203,70079955,2753,1,Egr3-201,-393,Egr3-201;Egr3-204;Egr3-203;Egr3-202,Egr3;Egr3;Egr3;Egr3,0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,10,19,13655,ENSMUSG00000033730,conserved gene and region,14,70076729,70076767,39,*,39,7,0.794871795,1.197368421,0.17948718,0.000000196,CpGisland,TRUE,U3,Pr-B
4578,cg04105754,0.0000673,0.00000827,8.141711724,9.60E-15,gain,yes,-0.0000118,0.0000141,-0.839079016,0.402071539,neg,ns,0.009384145,0.004116423,2.279684464,0.023305548,pos,ns,1.632540681,-0.000121912,0.000141563,-0.861182318,0.389803237,neg,ns,0.539898055,Urm1,Urm1_Intergenic_downstream,2,29846367,29846416,29846367,29846368,50,+,CGCGGAGAAAGGGGCTCGGCTGCAATTGGTACTGGATTTGAATAACGCCA,Distal Intergenic,2,29841648,29844064,2417,1,Urm1-202,4719,Urm1-205;Urm1-206;Urm1-201;Urm1-204;Urm1-202,Urm1;Urm1;Urm1;Urm1;Urm1,26292;19025;19025;19006;4719,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,10,68205,ENSMUSG00000069020,mapped to different genes,2,29846021,29846498,478,*,478,42,0.688284519,0.749440048,0.087866109,1.04E-29,CpGisland,TRUE,NA,NRS
18775,cg05444660,-0.0000116,0.00000459,-2.520644691,0.012215662,loss,ns,-0.00000654,0.00000779,-0.839065269,0.402079241,neg,ns,-0.001420725,0.002282466,-0.622451552,0.534102566,neg,ns,0.272375336,-0.0000994,0.0000785,-1.266881026,0.206148806,neg,ns,0.922100052,Gm12696,Gm12696_Intergenic_downstream,4,97281083,97281132,97281131,97281132,50,-,TATCATATTTCCACATAATTAGTTTGTTTTCCACTTGAAATCAAAAAACG,Distal Intergenic,4,97521428,97522332,905,2,Gm12696-201,241249,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,3,620883,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10722,cg23330818,-0.0000208,0.00000742,-2.802130697,0.005396077,loss,ns,-0.0000106,0.0000126,-0.838944079,0.402147143,neg,ns,-0.01133252,0.003691597,-3.069814789,0.002331362,neg,ns,2.632390263,0.000194679,0.000126954,1.533462983,0.126181716,pos,ns,0.816207961,Zfp462,Zfp462_Exon,4,55013763,55013812,55013763,55013764,50,+,CGTGCCAAACGTCAGGAGAGGAGGAAACAGCTTTTGAGCAAGCAGAAATA,"Exon (Zfp462-203/Zfp462, exon 3 of 13)",4,54947976,55083563,135588,1,Zfp462-203,65787,Zfp462-203;Zfp462-201;Zfp462-202,Zfp462;Zfp462;Zfp462,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,23,242466,ENSMUSG00000060206,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5213,cg14705099,0.0000206,0.00000331,6.220802852,1.60E-09,gain,yes,-0.00000472,0.00000563,-0.83888669,0.4021793,neg,ns,0.000474895,0.001649355,0.287927849,0.773594368,pos,ns,0.111486701,0.000106714,0.0000567,1.881376118,0.060857713,pos,ns,0.077192973,Nkain2,Nkain2_fiveUTR,10,32889670,32889719,32889670,32889671,50,-,CGTGCACCTGCCACTGCAATAACCCATGGTTTCCGAGACCCCTGCCACAG,Promoter (<=1kb),10,31693637,32889696,1196060,2,Nkain2-204,0,Nkain2-203;Nkain2-204;Nkain2-205;Nkain2-206;Nkain2-201,Nkain2;Nkain2;Nkain2;Nkain2;Nkain2,0;0;0;0;743,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,5,432450,ENSMUSG00000069670,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17806,cg07146324,0.000102723,0.00000916,11.21188369,1.02E-24,gain,yes,-0.0000131,0.0000156,-0.838729711,0.402267268,neg,ns,0.005645252,0.004559999,1.237994258,0.216654945,pos,ns,0.664231393,0.0000804,0.000156818,0.512933311,0.608363285,pos,ns,0.431111606,Irx3,Irx3_Exon,8,91805166,91805215,91805166,91805167,50,+,CGTAGACAAGAATTTAATGATTTAATTACAGTTGTAAGCCCTTTCCATGA,Promoter (3-4kb),8,91798525,91802067,3543,2,Irx3-202,-3099,Irx3-201;Irx3-202,Irx3;Irx3,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,16,36,16373,ENSMUSG00000031734,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
9472,cg25244901,0.0000406,0.0000103,3.944143512,0.0000991,gain,ns,-0.0000147,0.0000175,-0.838718857,0.402273351,neg,ns,0.018209601,0.005122556,3.55478833,0.000437255,pos,ns,3.359265618,-0.000758364,0.000176164,-4.304868808,0.0000224,neg,ns,0.172368289,Acvr2a,Acvr2a_Intron,2,48816103,48816152,48816103,48816104,50,+,CGGGTGGGCTGAATGTGTTGTGAAATGGCGATCATTGCCAGAGATTAACC,"Intron (Acvr2a-201/Acvr2a, intron 1 of 10)",2,48814109,48903269,89161,1,Acvr2a-201,1994,Acvr2a-201,Acvr2a,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,10,11480,ENSMUSG00000052155,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
6163,cg04128614,0.0000487,0.00000886,5.497919152,8.04E-08,gain,yes,-0.0000126,0.0000151,-0.838653723,0.402309855,neg,ns,0.009738228,0.004411972,2.207228221,0.028030504,pos,ns,1.552369091,-0.000210608,0.000151727,-1.388068125,0.166113048,neg,ns,0.022750822,Nrg2,Nrg2_Exon,18,36196601,36196650,36196601,36196602,50,+,CGCTGCAGCCCCCCGCTCCGGAGCGGCCACTTGTCCAGCACCTTTACCAA,Promoter (<=1kb),18,36017652,36197380,179729,2,Nrg2-203,730,Nrg2-203;Nrg2-201,Nrg2;Nrg2,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,20,100042150,ENSMUSG00000060275,conserved gene and region,18,36196476,36196996,521,*,521,55,0.700575816,0.861804511,0.105566219,2.23E-43,CpGisland,TRUE,U3,Pr-B
22085,cg01232381,-0.00001,0.00000316,-3.179731562,0.001623135,loss,ns,0.0000045,0.00000537,0.838626493,0.402325116,pos,ns,0.000803423,0.001572113,0.511046889,0.609681989,pos,ns,0.214896635,-0.0000598,0.0000541,-1.106505398,0.269365736,neg,ns,0.95140305,Kcnj16,Kcnj16_Intergenic_upstream,11,110802287,110802336,110802335,110802336,50,+,ACCTATGCAGCTTGTAATGGTTTTTGCAATCTTGATATGAAACAGCACCG,Distal Intergenic,11,110968033,111027965,59933,1,Kcnj16-206,-165697,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,16517,ENSMUSG00000051497,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20282,cg01273460,0.0000933,0.00000873,10.67872345,7.10E-23,gain,yes,-0.0000124,0.0000148,-0.838525862,0.402381519,neg,ns,0.017604819,0.004346443,4.05039697,0.0000647,pos,ns,4.189286069,-0.000450675,0.000149474,-3.015078599,0.00278146,neg,ns,0.292363648,Hoxc5,Hoxc5_Intron,15,102983569,102983618,102983569,102983570,50,+,CGTTTATGGGCCTATGAAACGGTTGGGAATTTGGACTTTTTATGAGGATA,"Intron (Hoxc5-202/Hoxc5, intron 1 of 1)",15,102967443,103015676,48234,1,Hoxc5-202,16126,Hoxc5-202;Hoxc9-202;Hoxc9-201,Hoxc5;Hoxc9;Hoxc9,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,46,134,15424,ENSMUSG00000022485,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
17097,cg10887333,0.0000301,0.00000726,4.139177514,0.000045,gain,ns,-0.0000103,0.0000123,-0.838524247,0.402382425,neg,ns,-0.000703468,0.00361399,-0.194651247,0.845793483,neg,ns,0.072735665,0.000241199,0.000124285,1.940692589,0.053201912,pos,ns,0.735432778,Gm45497,Gm45497_Promoter,8,88382275,88382324,88382275,88382276,50,+,CGCATGAAAGATAACGCCCAAATCAACAAATCTGCCATTGTGGCTTTGAA,Promoter (8-9kb),8,88391121,88392228,1108,1,Gm45497-201,-8797,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,3,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
143,cg01047218,-0.00000539,0.00000185,-2.907747582,0.00390314,loss,ns,0.00000264,0.00000315,0.838239041,0.402542307,pos,ns,-0.0000825,0.000921997,-0.089455248,0.928777883,neg,ns,0.032088135,-0.0000587,0.0000317,-1.850540779,0.065186901,neg,ns,0.037954441,Kdm2a,Kdm2a_fiveUTR,19,4333909,4333958,4333909,4333910,50,+,CGAACAATGCTGCTGCGTCACCCACATGCAGCTCCCAGAAATGCTTTGCA,Promoter (<=1kb),19,4329191,4333919,4729,2,Kdm2a-210,0,Kdm2a-201;Kdm2a-202;Kdm2a-212;Kdm2a-210,Kdm2a;Kdm2a;Kdm2a;Kdm2a,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,30,225876,ENSMUSG00000054611,conserved gene and region,19,4333891,4334071,181,*,181,11,0.651933702,0.572620075,0.060773481,0.00000179,CpGisland,TRUE,NA,NRS
2764,cg09881550,0.0000127,0.0000023,5.519100371,7.21E-08,gain,yes,-0.00000328,0.00000391,-0.837970113,0.402693099,neg,ns,0.001130887,0.001146136,0.986695081,0.324561624,pos,ns,0.488702832,-0.0000431,0.0000394,-1.093786111,0.274897976,neg,ns,0.072045394,Prdm13,Prdm13_Promoter,4,21686339,21686388,21686339,21686340,50,+,CGTGTGCCATACAGAAATTAGGCAGGTACTTGATGGGAAAACACCAGAAA,Promoter (<=1kb),4,21677481,21685963,8483,2,Prdm13-202,-376,Prdm13-205;Prdm13-201;Prdm13-202;Prdm13-203;Prdm13-206;Prdm13-204,Prdm13;Prdm13;Prdm13;Prdm13;Prdm13;Prdm13,0;0;0;0;0;-494,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,19,23,230025,ENSMUSG00000040478,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
3727,cg22739980,0.000108088,0.0000121,8.904871355,4.61E-17,gain,yes,-0.0000173,0.0000206,-0.837924554,0.402718648,neg,ns,0.024297687,0.006041229,4.021977232,0.0000726,pos,ns,4.139344174,-0.000563923,0.000207757,-2.714335275,0.007012689,neg,ns,0.410132555,Pou2f2,Pou2f2_Intron,7,25164934,25164983,25164982,25164983,50,+,CTGACCTGACCACTTAACCTATTGATAAGCTGGCAAGGATGGAGCAGGCG,"Intron (Pou2f2-208/Pou2f2, intron 1 of 4)",7,25120618,25179726,59109,2,Pou2f2-208,14743,Pou2f2-208,Pou2f2,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,29,18987,ENSMUSG00000008496,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3309,cg11792642,-0.0000267,0.00000771,-3.45923834,0.00061756,loss,ns,0.000011,0.0000131,0.837789065,0.402794634,pos,ns,-0.001011785,0.003837679,-0.263645059,0.792228598,neg,ns,0.101149485,-0.00000472,0.000131977,-0.035770204,0.971488613,neg,ns,0.895576363,Kcnma1,Kcnma1_Exon,14,23526603,23526652,23526603,23526604,50,-,CGGGCACGTAGCGGGCAAACATTGCCTACATGCATGAAACAAAGAAACAA,"Exon (Kcnma1-237/Kcnma1, exon 10 of 29)",14,23289431,23803304,513874,2,Kcnma1-207,276652,Kcnma1-207;Kcnma1-210;Kcnma1-205;Kcnma1-201;Kcnma1-208;Kcnma1-209;Kcnma1-212;Kcnma1-204;Kcnma1-202;Kcnma1-211;Kcnma1-229;Kcnma1-234;Kcnma1-223;Kcnma1-214;Kcnma1-216;Kcnma1-219;Kcnma1-220;Kcnma1-224;Kcnma1-233;Kcnma1-236;Kcnma1-237;Kcnma1-213;Kcnma1-228;Kcnma1-203;Kcnma1-206;Kcnma1-221;Kcnma1-225;Kcnma1-226;Kcnma1-230;Kcnma1-235;Kcnma1-217;Kcnma1-238;Kcnma1-231;Kcnma1-218;Kcnma1-222;Kcnma1-232,Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,16,41,16531,ENSMUSG00000063142,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10174,cg12810523,0.0000735,0.00000686,10.71320889,5.41E-23,gain,yes,-0.00000976,0.0000117,-0.837779864,0.402799795,neg,ns,0.014613031,0.003414301,4.279948149,0.0000249,pos,ns,4.602993016,-0.000242566,0.000117418,-2.065837276,0.039674481,neg,ns,0.138987901,Gm28308,Gm28308_fiveUTR,6,52208630,52208679,52208630,52208631,50,+,CGCCCCTCTGCAGGACTGTGATTTGTTGTGTATTAGTACATCTGGCTATA,5' UTR,6,52163359,52213339,49981,2,Gm28308-201,4660,Gm28308-201;Hoxa3-201;Hoxa3-203;Hoxa5-201;Hoxa6-201,Gm28308;Hoxa3;Hoxa3;Hoxa5;Hoxa6,0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,21,103,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
18778,cg01865313,-0.000012,0.00000567,-2.125445079,0.034339947,loss,ns,0.00000806,0.00000962,0.837680295,0.402855642,pos,ns,-0.002185566,0.002819766,-0.775087712,0.438878651,neg,ns,0.357655545,0.000092,0.000097,0.949194496,0.34326108,pos,ns,0.89406343,Gm5560,Gm5560_Intergenic_downstream,5,97301150,97301199,97301150,97301151,50,-,CGGTACCTCAGGATAATGGCAGCAGAAGGCAAAGGGAGCAGACAGCTGGC,Distal Intergenic,5,97264828,97265719,892,1,Gm5560-201,36371,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,9,433923,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24049,cg22163848,-0.00000518,0.00000155,-3.348452871,0.000912872,loss,ns,0.0000022,0.00000263,0.837638444,0.402879118,pos,ns,-0.000293903,0.000770142,-0.381622345,0.70300295,neg,ns,0.153042852,0.0000106,0.0000265,0.398691158,0.69039526,pos,ns,0.056307566,Bcar3,Bcar3_Exon,3,122292961,122293010,122293009,122293010,50,-,ACTCGAACCCGGAACCTTTGAATGCCTTCAGCCTCTAGAAGTCCAATGCG,Promoter (1-2kb),3,122294136,122427148,133013,1,Bcar3-202,-1175,Bcar3-202,Bcar3,-1126,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,8,29815,ENSMUSG00000028121,conserved gene and region,3,122292926,122294040,1115,*,1115,150,0.722869955,1.030721351,0.134529148,3.20E-135,CpGisland,TRUE,U1,Pr-A
13578,cg13626528,-8.85E-08,0.0000029,-0.030511429,0.975678813,loss,ns,-0.00000413,0.00000493,-0.837604064,0.402898403,neg,ns,-0.0000991,0.001443979,-0.068633961,0.945325234,neg,ns,0.024418749,0.00000462,0.0000497,0.09307313,0.925905585,pos,ns,0.842873762,Hat1,Hat1_Exon,2,71421168,71421217,71421168,71421169,50,-,CGCGACTGTAATTGACCTGCTTGGCTTTCTGTTTTATCTGCAGATTTGAG,"Exon (Hat1-202/Hat1, exon 7 of 11)",2,71388958,71441622,52665,1,Hat1-202,32210,Hat1-202;Hat1-201;Hat1-204,Hat1;Hat1;Hat1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,12,107435,ENSMUSG00000027018,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20830,cg11904527,0.00000298,0.00000279,1.065980195,0.287262104,gain,ns,0.00000398,0.00000475,0.837551251,0.402928029,pos,ns,0.000482924,0.001391034,0.347168895,0.728700006,pos,ns,0.137451227,0.00000735,0.0000478,0.153578315,0.878042161,pos,ns,0.05181263,Tmtc2,Tmtc2_Exon,10,105573665,105573714,105573713,105573714,50,-,ACCTGTCATCATAGCAGAAATCCGCACTCAGGGTGTTGAGATACAAGGCG,Promoter (<=1kb),10,105187663,105574435,386773,2,Tmtc2-201,721,Tmtc2-201;Tmtc2-205,Tmtc2;Tmtc2,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,4,278279,ENSMUSG00000036019,conserved gene and region,10,105573441,105574130,690,*,690,60,0.647826087,0.894322993,0.086956522,6.90E-42,CpGisland,TRUE,U1,Pr-A
24224,cg02628606,0.0000148,0.0000077,1.916418215,0.056231209,gain,ns,-0.000011,0.0000131,-0.837472113,0.402972425,neg,ns,0.003682044,0.003831444,0.961006867,0.337297679,pos,ns,0.471986647,0.00002,0.000131763,0.151904608,0.879360985,pos,ns,0.848328983,Dpp10,Dpp10_Intron,1,124002917,124002966,124002917,124002918,50,-,CGATCTGCAAAATCATTTGAAAGTTGCTGCTTCAACAGCTGGTATCTGGG,"Intron (Dpp10-202/Dpp10, intron 1 of 25)",1,123321471,124045559,724089,2,Dpp10-202,42593,Dpp10-202;Dpp10-201;Dpp10-206;Dpp10-203,Dpp10;Dpp10;Dpp10;Dpp10,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,2,269109,ENSMUSG00000036815,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2567,cg20887822,0.0000192,0.00000308,6.259922702,1.28E-09,gain,yes,-0.00000437,0.00000522,-0.837310093,0.403063326,neg,ns,-0.001477953,0.001530466,-0.965688128,0.334952999,neg,ns,0.47501613,0.00006,0.0000526,1.139316863,0.255450608,pos,ns,0.934837461,Usp54,Usp54_Exon,14,20564956,20565005,20565004,20565005,50,+,GATCCTGCAGGCTCCGTGCTTTTCGAATACTGATTTGCAACTTCTTATCG,"Exon (1810062O18Rik-203/1810062O18Rik-203, exon 3 of 3)",14,20548912,20618354,69443,2,Usp54-202,53349,Usp54-202;Usp54-201,Usp54;Usp54,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,9,78787,ENSMUSG00000034235,mapped to different genes,14,20564798,20565024,227,*,227,12,0.568281938,0.656702025,0.052863436,0.00000219,CpGisland,TRUE,NA,NRS
7170,cg03073112,-0.000000656,0.0000011,-0.598051783,0.550242043,loss,ns,-0.00000156,0.00000186,-0.837088306,0.40318778,neg,ns,-0.000228183,0.000545919,-0.417980605,0.676250675,neg,ns,0.169892288,-0.00000272,0.0000188,-0.144767353,0.884988633,neg,ns,0.972363448,Lcor,Lcor_Exon,19,41558781,41558830,41558829,41558830,50,-,GCACTGGTGATCAGTACAGCTATAGCTCTTTGGTAATGGGTTCACAAACG,"Exon (Lcor-201/Lcor, exon 8 of 8)",19,41482637,41562261,79625,1,Lcor-201,76144,Lcor-201;Lcor-204;Lcor-206;Lcor-202;Lcor-205,Lcor;Lcor;Lcor;Lcor;Lcor,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,25,212391,ENSMUSG00000025019,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23452,cg07040389,0.00000759,0.00000685,1.108304064,0.268589648,gain,ns,-0.00000974,0.0000116,-0.836966183,0.403256318,neg,ns,0.004116826,0.003409975,1.207289407,0.228241057,pos,ns,0.641606231,-0.000154246,0.000117269,-1.31531915,0.189374692,neg,ns,0.550631275,Rbfox3,Rbfox3_Exon,11,118496354,118496403,118496402,118496403,50,+,AATCTCAGCACCATAAAATCCATCCTGATACACGACCCTGGAAGCAAACG,"Exon (Rbfox3-205/Rbfox3, exon 11 of 14)",11,118489762,118909550,419789,2,Rbfox3-205,413147,Rbfox3-205;Rbfox3-203;Rbfox3-201;Rbfox3-202;Rbfox3-204;Rbfox3-206;Rbfox3-210,Rbfox3;Rbfox3;Rbfox3;Rbfox3;Rbfox3;Rbfox3;Rbfox3,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,13,52897,ENSMUSG00000025576,conserved gene and region,11,118496386,118496517,132,*,132,9,0.659090909,0.675,0.068181818,0.00000904,CpGisland,TRUE,U11,Tr-P
26201,cg24788898,-0.00000453,0.00000184,-2.465195513,0.014235475,loss,ns,0.00000262,0.00000312,0.836944328,0.403268584,pos,ns,-0.002186554,0.000915423,-2.388572825,0.017512026,neg,ns,1.756663594,0.0000558,0.0000315,1.773222974,0.077173574,pos,ns,0.956648384,Sox5,Sox5_Intron,6,144367983,144368032,144367983,144367984,50,-,CGGCTGTAATGGCTGTTGTAATGTTTTAATAGCTCGCTTCTTCTAAGCAC,"Intron (Sox5-209/Sox5, intron 4 of 13)",6,143843739,144781977,938239,2,Sox5-209,413945,Sox5-209;Sox5-212,Sox5;Sox5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,71,20678,ENSMUSG00000041540,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17252,cg14848832,-0.00000347,0.0000014,-2.477647967,0.013757726,loss,ns,0.00000199,0.00000238,0.836753203,0.403375864,pos,ns,-0.0000342,0.000697946,-0.048949988,0.960990674,neg,ns,0.017280827,0.00000965,0.000024,0.401932964,0.68801033,pos,ns,0.047959343,Efna3,Efna3_Exon,3,89315792,89315841,89315792,89315793,50,-,CGCTGCGCAGACTCACCCAGCACGTTGATCTTCACATTGGGGCCCATGGT,"Exon (Efna3-201/Efna3, exon 4 of 5)",3,89313899,89322965,9067,2,Efna3-201,7124,Efna3-201;Efna3-203;Efna3-202,Efna3;Efna3;Efna3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,6,13638,ENSMUSG00000028039,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
19302,cg04295534,-0.0000223,0.00000542,-4.11659755,0.0000493,loss,ns,0.0000077,0.0000092,0.836748673,0.403378407,pos,ns,0.001544704,0.00269654,0.572846718,0.567163738,pos,ns,0.246291544,0.0000711,0.0000927,0.766402449,0.444020083,pos,ns,0.907409925,Foxp1,Foxp1_Intron,6,98948009,98948058,98948009,98948010,50,-,CGTGATTCACACCCACTGCTGGGCTGTCTCTAATAAGCCACAGAGGAAGC,"Intron (Foxp1-206/Foxp1, intron 11 of 17)",6,98925338,99266515,341178,2,Foxp1-206,318457,Foxp1-206;Foxp1-204;Foxp1-220;Foxp1-230;Foxp1-225;Foxp1-201;Foxp1-205;Foxp1-207;Foxp1-208;Foxp1-226;Foxp1-228;Foxp1-221;Foxp1-222;Foxp1-210;Foxp1-213,Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,87,108655,ENSMUSG00000030067,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7479,cg05913350,0.0000768,0.0000105,7.316736133,2.19E-12,gain,yes,-0.0000149,0.0000178,-0.836690945,0.403410814,neg,ns,0.018171056,0.005225882,3.477127434,0.000579237,pos,ns,3.237143776,-0.000427541,0.000179718,-2.378956993,0.017966919,neg,ns,0.49829775,Pou3f3,Pou3f3_Intron,1,42741831,42741880,42741831,42741832,50,+,CGCACTGCCAACAGAGGTCACCTATCCTAACAGGCTGTTCACTTCAGCCG,"Intron (Gm20646-201/Gm20646-201, intron 1 of 1)",1,42695768,42703176,7409,1,Pou3f3-201,46063,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,37,18993,ENSMUSG00000045515,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1543,cg02362875,-0.0000313,0.00000854,-3.666906334,0.000288808,loss,ns,-0.0000121,0.0000145,-0.836615541,0.403453145,neg,ns,-0.009037922,0.004251739,-2.125699905,0.034318533,neg,ns,1.46447128,-0.0000477,0.000146217,-0.326337929,0.744388896,neg,ns,0.871569544,Cask,Cask_Exon,X,13549288,13549337,13549288,13549289,50,-,CGAATGCCAGCTTCTTTACAGGGGATGAGGTCATCCTTGGCTGGATCATA,"Exon (Cask-212/Cask, exon 18 of 24)",20,13517080,13786030,268951,2,Cask-212,236693,Cask-212;Cask-203;Cask-204;Cask-201;Cask-209,Cask;Cask;Cask;Cask;Cask,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,9,12361,ENSMUSG00000031012,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13643,cg03829908,-0.00000775,0.00000428,-1.81208431,0.070940614,loss,ns,-0.00000608,0.00000727,-0.836527489,0.403502581,neg,ns,0.003526335,0.002128823,1.656471273,0.09863818,pos,ns,1.005954949,-0.000157985,0.0000732,-2.157974033,0.031697551,neg,ns,0.564856159,Colgalt1,Colgalt1_Exon,8,71622703,71622752,71622751,71622752,50,-,GTGGTGGACCGGGGGCTGCAGAAATCGCTTGTGTTTGAGGATGACCTGCG,"Exon (Colgalt1-201/Colgalt1, exon 10 of 12)",8,71610998,71624911,13914,1,Colgalt1-201,11705,Colgalt1-201;Colgalt1-202;Colgalt1-203;Unc13a-201,Colgalt1;Colgalt1;Colgalt1;Unc13a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,234407,ENSMUSG00000034807,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17895,cg17696662,-0.0000058,0.0000122,-0.477318213,0.633471884,loss,ns,-0.0000173,0.0000207,-0.836452456,0.40354471,neg,ns,-0.014444005,0.00605182,-2.386720755,0.017598845,neg,ns,1.754515845,0.000463013,0.000208122,2.224721522,0.026819582,pos,ns,0.739126999,Irx5,Irx5_Intron,8,92369036,92369085,92369036,92369037,50,+,CGGAATCTCAGACACCGTGACAGGCTGTCAAGGGAGATATATTTAGGCTG,"Intron (Irx5-202/Irx5, intron 4 of 4)",8,92357625,92376286,18662,1,Irx5-202,11411,Irx5-202,Irx5,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,30,54352,ENSMUSG00000031737,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
24915,cg10021911,0.00000637,0.00000368,1.731569925,0.084345006,gain,ns,-0.00000522,0.00000625,-0.836387889,0.403580965,neg,ns,-0.004945607,0.00182971,-2.702944904,0.00725173,neg,ns,2.139558362,0.0000829,0.0000629,1.317185816,0.188749114,pos,ns,0.889660999,F830045P16Rik,F830045P16Rik_Intergenic_upstream,2,129564419,129564468,129564467,129564468,50,+,TCAGTCAACCCTCTCTCTTTCACAAGGTTTTAATTTTTAATTTCACAGCG,Distal Intergenic,2,129458359,129536602,78244,2,F830045P16Rik-201,-27817,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,2,228592,ENSMUSG00000043727,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6489,cg01768969,0.00000557,0.00000138,4.051809288,0.0000643,gain,ns,-0.00000195,0.00000234,-0.836320568,0.403618768,neg,ns,-0.00000143,0.000684443,-0.002091283,0.998332744,neg,ns,0.000724684,-0.0000539,0.0000235,-2.289711881,0.022709718,neg,ns,0.028222795,Msantd2,Msantd2_Promoter,9,37490004,37490053,37490052,37490053,50,+,TGGCCGCCAGCCCGTAGGTTTCCTGAGTTTGAAGTTGGGCGTGCCTGCCG,Promoter (<=1kb),9,37489021,37524150,35130,1,Msantd2-209,983,Msantd2-209;Msantd2-204;Msantd2-210;Msantd2-201;Msantd2-202;Msantd2-208;Msantd2-205;Msantd2-203;Msantd2-206,Msantd2;Msantd2;Msantd2;Msantd2;Msantd2;Msantd2;Msantd2;Msantd2;Msantd2,0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,2,8,235184,ENSMUSG00000042138,conserved gene but different region,9,37489051,37490155,1105,*,1105,120,0.717647059,0.844575228,0.108597285,1.63E-95,CpGisland,TRUE,U4,Pr-F
14362,cg06029967,0.0000336,0.0000129,2.599098063,0.009793875,gain,ns,0.0000184,0.000022,0.836312565,0.403623263,pos,ns,0.000067,0.006435251,0.010413812,0.991697829,pos,ns,0.003620637,0.0000837,0.000221308,0.37836299,0.705419928,pos,ns,0.036779748,Smad7,Smad7_Intron,18,75370701,75370750,75370701,75370702,50,-,CGAGGCTGGCGCCAGGCGGCCTCTTTTGTTTATCTGACAGCTAAATATCA,"Intron (Smad7-201/Smad7, intron 1 of 3)",18,75367529,75395935,28407,1,Smad7-201,3172,Smad7-201;Smad7-202;Smad7-205;Smad7-204;Smad7-203,Smad7;Smad7;Smad7;Smad7;Smad7,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,19,17131,ENSMUSG00000025880,conserved gene and region,18,75370519,75370718,200,*,200,25,0.76,0.869414015,0.125,5.57E-22,CpGisland,TRUE,U1,Pr-A
23838,cg07357026,-0.000000539,0.00000171,-0.314478807,0.753368954,loss,ns,0.00000244,0.00000291,0.836216324,0.40367731,pos,ns,0.00128281,0.000853199,1.503529677,0.133720557,pos,ns,0.873801823,-0.00000859,0.0000293,-0.29270963,0.769939932,neg,ns,0.038062004,En1,En1_Promoter,1,120600054,120600103,120600102,120600103,50,+,ATCCGGGCTCCACTACATGAAAGGTAAAATGAATTACCGACGTTAAGCCG,Promoter (2-3kb),1,120602418,120607992,5575,1,En1-201,-2315,En1-201,En1,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,23,36,13798,ENSMUSG00000058665,conserved gene and region,1,120599977,120600103,127,*,127,10,0.503937008,1.241446725,0.078740158,0.000000615,CpGisland,TRUE,U13,Hc-P
9876,cg09122966,-0.0000134,0.00000475,-2.830671264,0.004948471,loss,ns,-0.00000674,0.00000807,-0.835987706,0.403805715,neg,ns,0.002867596,0.002363705,1.21317834,0.225985239,pos,ns,0.645919927,-0.000164239,0.0000813,-2.02047094,0.044194163,neg,ns,0.873444015,Colca2,Colca2_Exon,9,51279796,51279845,51279844,51279845,50,+,AGTATTTAAAACCTCTAGAAACCCATGATTTGACAATCAATGATTGCGCG,Promoter (<=1kb),9,51270258,51279651,9394,2,Colca2-203,-145,Colca2-201;Colca2-202;Colca2-203,Colca2;Colca2;Colca2,-1242;-1242;-145,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,100502940,ENSMUSG00000079559,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1474,cg25721925,-0.00000116,0.00000175,-0.663662388,0.507399665,loss,ns,0.00000248,0.00000297,0.835581036,0.404034184,pos,ns,0.001326588,0.00086961,1.525497889,0.128154511,pos,ns,0.892266102,-0.0000371,0.0000299,-1.239431809,0.216123119,neg,ns,0.957493974,Usp9x,Usp9x_Exon,X,13140430,13140479,13140478,13140479,50,+,TAAACACTCAGGCGACTACTTTACTCTTTTAAGACACCTTCTTAATTACG,"Exon (Usp9x-201/Usp9x, exon 28 of 45)",20,13071514,13173328,101815,1,Usp9x-201,68916,Usp9x-201,Usp9x,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,10,22284,ENSMUSG00000031010,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22857,cg03586106,0.0000429,0.00000423,10.13811685,4.77E-21,gain,yes,-0.000006,0.00000718,-0.835545254,0.40405429,neg,ns,0.010327052,0.002104066,4.908139746,0.00000149,pos,ns,5.827188246,-0.000258011,0.0000724,-3.565729637,0.000420102,neg,ns,0.09161893,Sox6,Sox6_Exon,7,116034492,116034541,116034492,116034493,50,-,CGTAAGTATTCAAAGCATTTCCCGTCGTGCAACATCAGAAAGTGAGTGGC,Promoter (<=1kb),7,115801599,116034513,232915,2,Sox6-208,0,1110004F10Rik-205;Sox6-210;Sox6-202;Sox6-204;Sox6-209;Sox6-214;Sox6-208,1110004F10Rik;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6,-4856;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,57,20679,ENSMUSG00000051910,conserved gene and region,7,116034285,116034518,234,*,234,19,0.636752137,0.811610077,0.081196581,4.56E-13,CpGisland,TRUE,U3,Pr-B
24126,cg18309798,0.0000143,0.0000074,1.937760522,0.053560384,gain,ns,0.0000105,0.0000126,0.835539351,0.404057608,pos,ns,0.012602286,0.003680791,3.42379805,0.000700581,pos,ns,3.15454155,-0.000469942,0.000126582,-3.712549935,0.000243216,neg,ns,0.382589905,Anapc5,Anapc5_Exon,5,122802843,122802892,122802843,122802844,50,-,CGTGATCGTTGGACTCCTGGGCAATCCTAATTGCCTCCTGCAGGGCGAGC,"Exon (Anapc5-201/Anapc5, exon 8 of 17)",5,122787459,122821339,33881,2,Anapc5-201,18447,Anapc5-201;Anapc5-202;Anapc5-203;Anapc5-208;Anapc5-205;Anapc5-212;Anapc5-218;Anapc5-209;Anapc5-204;Anapc5-215;Anapc5-217;Anapc5-216;Anapc5-207;Anapc5-214;Anapc5-213,Anapc5;Anapc5;Anapc5;Anapc5;Anapc5;Anapc5;Anapc5;Anapc5;Anapc5;Anapc5;Anapc5;Anapc5;Anapc5;Anapc5;Anapc5,0;0;0;0;0;0;0;-3113;0;0;0;0;0;18126;18378,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,6,59008,ENSMUSG00000029472,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1684,cg13951226,-0.0000182,0.00000379,-4.806092113,0.0000024,loss,ns,0.00000538,0.00000644,0.835355598,0.40416087,pos,ns,-0.001610193,0.001887676,-0.853002427,0.394316533,neg,ns,0.404155013,0.000117319,0.0000649,1.807219914,0.071697351,pos,ns,0.928302046,Tle4,Tle4_Intron,19,14514149,14514198,14514197,14514198,50,+,TTGCCCACATCCTCATTACATGCAACACTAATTACTACCAGCAGATTCCG,"Intron (Tle4-201/Tle4, intron 8 of 19)",19,14448150,14598051,149902,2,Tle4-201,83853,Tle4-201;Tle4-202,Tle4;Tle4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,29,21888,ENSMUSG00000024642,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24089,cg04889095,-0.00000132,0.00000264,-0.499211362,0.617984575,loss,ns,-0.00000375,0.00000449,-0.835346249,0.404166124,neg,ns,-0.003963468,0.00131407,-3.016178051,0.002771684,neg,ns,2.557256253,0.0000929,0.0000452,2.054674061,0.0407484,pos,ns,0.957785854,Rimklb,Rimklb_Exon,6,122456381,122456430,122456429,122456430,50,-,TCACTGGCAGTGGACACCACGGAGAGCAGGGACATACGCCGGGTGAGCCG,"Exon (Rimklb-201/Rimklb, exon 6 of 6)",6,122447296,122466587,19292,2,Rimklb-204,10157,Gm8430-201;Rimklb-204;Rimklb-202;Rimklb-201;Rimklb-206;Rimklb-203,Gm8430;Rimklb;Rimklb;Rimklb;Rimklb;Rimklb,-474;0;0;0;0;16124,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,7,108653,ENSMUSG00000040649,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21135,cg00258262,-0.00000209,0.0000125,-0.166895256,0.867561275,loss,ns,-0.0000178,0.0000213,-0.835008691,0.404355863,neg,ns,0.006604845,0.006239845,1.058495104,0.290653863,pos,ns,0.5366239,-0.000835945,0.000214588,-3.895587518,0.00012004,neg,ns,0.795264886,Gm17304,Gm17304_Intron,5,106554673,106554722,106554673,106554674,50,+,CGGGATAGTAGGTGTCCCAAAATGTCTTAATTCAGAGAATTAGTGTTAAC,"Intron (Gm28050-202/Gm28050-202, intron 1 of 2)",5,106609098,106609201,104,1,Gm17304-201,-54376,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,35,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18567,cg16848873,-0.00000147,0.00000565,-0.260735175,0.794469853,loss,ns,0.00000801,0.00000959,0.834933451,0.404398162,pos,ns,-0.001058758,0.002810859,-0.376667223,0.70667861,neg,ns,0.150778054,0.0000304,0.0000967,0.314161274,0.753609867,pos,ns,0.100761896,Hoxb6,Hoxb6_fiveUTR,11,96292473,96292522,96292521,96292522,50,+,TTATAATGCAGCATTCTTTTGGACACCACACCTAGGTCGGAGCACTGTCG,Promoter (<=1kb),11,96292476,96301569,9094,1,Hoxb6-202,0,Hoxb6-202;Hoxb7-201;Hoxb7-202,Hoxb6;Hoxb7;Hoxb7,0;0;3758,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,6,16,15414,ENSMUSG00000000690,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
2463,cg18640030,0.0000362,0.0000142,2.551244446,0.011213936,gain,ns,0.0000201,0.0000241,0.834925298,0.404402746,pos,ns,0.001758906,0.007066691,0.248900943,0.803602227,pos,ns,0.094958868,0.000206125,0.000243023,0.84817112,0.396997094,pos,ns,0.409662329,Crh,Crh_fiveUTR,3,19695383,19695432,19695383,19695384,50,+,CGCAGCATTTGCCTAATAAGCTGACGCTCTCTTGACAGCTCGATTGCGTG,Promoter (<=1kb),3,19693401,19695396,1996,2,Crh-201,0,Crh-201;Trim55-201,Crh;Trim55,0;50909,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,3,12918,ENSMUSG00000049796,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
3382,cg08611749,0.0000935,0.00000746,12.5385431,1.89E-29,gain,yes,-0.0000106,0.0000127,-0.834886589,0.404424509,neg,ns,0.014951285,0.003710649,4.029291444,0.0000704,pos,ns,4.152170377,-0.0000767,0.000127609,-0.601253326,0.548110667,neg,ns,0.204037002,Gm11892,Gm11892_Intergenic_upstream,4,23983605,23983654,23983605,23983606,50,+,CGGCCCAGGAAGGGATCTAAGTGGGTTTATCAGTGCTTCTTTACGCCTCG,Distal Intergenic,4,24238100,24239301,1202,1,Gm11892-201,-254446,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,16,16,664973,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25240,cg20141826,-0.0000128,0.00000604,-2.11907657,0.034878844,loss,ns,-0.00000856,0.0000103,-0.834668943,0.404546886,neg,ns,0.00184,0.003003806,0.612556128,0.540618947,pos,ns,0.267108738,-0.000237799,0.000103301,-2.302012492,0.021997014,neg,ns,0.839240225,Ubxn11,Ubxn11_Exon,4,134125127,134125176,134125127,134125128,50,-,CGAGGTGATTGACATCCGGGGCCCCATCAGGGACACCTTGCAGGTGAGGC,"Exon (Ubxn11-205/Ubxn11, exon 6 of 6)",4,134102570,134125165,22596,1,Ubxn11-205,22557,Cep85-201;Cep85-202;Sh3bgrl3-201;Sh3bgrl3-202;Sh3bgrl3-203;Ubxn11-205;Ubxn11-202;Ubxn11-208;Ubxn11-201;Ubxn11-211;Ubxn11-206;Ubxn11-207;Ubxn11-209;Ubxn11-210,Cep85;Cep85;Sh3bgrl3;Sh3bgrl3;Sh3bgrl3;Ubxn11;Ubxn11;Ubxn11;Ubxn11;Ubxn11;Ubxn11;Ubxn11;Ubxn11;Ubxn11,0;0;3613;3563;3561;0;0;0;0;0;12600;0;0;-751,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,67586,ENSMUSG00000012126,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19090,cg23773815,0.00000183,0.00000192,0.952830864,0.341418113,gain,ns,0.00000272,0.00000326,0.834636701,0.404565017,pos,ns,0.000623337,0.000955721,0.65221617,0.514745031,pos,ns,0.288407837,-0.0000162,0.0000329,-0.491759375,0.623237479,neg,ns,0.054130297,Ppp1r1b,Ppp1r1b_Promoter,11,98339310,98339359,98339358,98339359,50,-,ATTCTGCATAAAATTTTAATGGTCTCTCTGGCTGATCCGGGACGGCAGCG,Promoter (9-10kb),11,98348404,98357796,9393,1,Ppp1r1b-201,-9094,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,16,16,19049,ENSMUSG00000061718,conserved gene and region,11,98339347,98339463,117,*,117,11,0.717948718,0.783323189,0.094017094,2.09E-08,CpGisland,TRUE,U3,Pr-B
20916,cg04567783,0.000173517,0.00000753,23.04795972,3.60E-69,gain,yes,-0.0000107,0.0000128,-0.83447008,0.404658722,neg,ns,0.010932163,0.003747026,2.917556827,0.003785663,pos,ns,2.421858038,0.000206021,0.00012886,1.598800835,0.110883553,pos,ns,0.230722651,Pax6,Pax6_Intron,2,105689960,105690009,105689960,105689961,50,-,CGGACAGTGATTAATGATAGCAGAGCAGAGGGGTTAACACACTTCACTGA,"Intron (Pax6-206/Pax6, intron 7 of 12)",2,105668900,105697364,28465,1,Pax6-206,21060,Pax6-206;Pax6-207;Pax6-210;Pax6-208;Pax6-202;Pax6-205;Pax6-225;Pax6-204;Pax6-201;Pax6-203;Pax6-224;Pax6-219;Pax6-221;Pax6-213;Pax6-211;Pax6-222;Pax6-212;Pax6-215;Pax6-223;Pax6-216;Pax6-218,Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;-2474,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,78,18508,ENSMUSG00000027168,conserved gene and region,2,105689929,105689961,33,*,33,6,0.727272727,1.546875,0.181818182,0.00000219,CpGisland,TRUE,U13,Hc-P
14791,cg17006779,-0.00000477,0.00000155,-3.070420824,0.002326777,loss,ns,0.0000022,0.00000264,0.834348473,0.404727121,pos,ns,-0.0000646,0.000772404,-0.083630729,0.933404012,neg,ns,0.029930337,-0.0000305,0.0000266,-1.147473604,0.252070722,neg,ns,0.030738204,Nufip2,Nufip2_fiveUTR,11,77686132,77686181,77686132,77686133,50,+,CGCGCTCAGATATACTGAGTGAGCCCTGAGAAGCAGTCTCAGATCCTGAC,Promoter (<=1kb),11,77686155,77712741,26587,1,Nufip2-201,0,Nufip2-201;Nufip2-204;Nufip2-202;Nufip2-203,Nufip2;Nufip2;Nufip2;Nufip2,0;0;-1278;-1420,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,10,68564,ENSMUSG00000037857,conserved gene but different region,11,77685817,77686243,427,*,427,32,0.597189696,0.870096791,0.074941452,1.51E-20,CpGisland,TRUE,U1,Pr-A
9490,cg19963527,-0.00000671,0.00000329,-2.040618704,0.04213567,loss,ns,0.00000466,0.00000558,0.834317024,0.40474481,pos,ns,-0.000879753,0.001636053,-0.53772869,0.591150178,neg,ns,0.228302175,-0.0000535,0.0000563,-0.950056038,0.342823862,neg,ns,0.954168167,Htr3a,Htr3a_Intergenic_downstream,9,48887260,48887309,48887260,48887261,50,-,CGCTGTAAAGTTTTATATTCCTGAAAACTAGGGATAAAAGATGTAACCAT,Distal Intergenic,9,48899213,48911021,11809,2,Htr3a-202,23761,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,15561,ENSMUSG00000032269,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25441,cg22747196,-0.00000776,0.000007,-1.107869632,0.268776955,loss,ns,-0.00000992,0.0000119,-0.834274571,0.404768691,neg,ns,0.000182372,0.003484711,0.05233504,0.958295441,pos,ns,0.018500578,0.00000351,0.000119839,0.029317684,0.976630088,pos,ns,0.823628366,Cux1,Cux1_Intergenic_upstream,5,136605656,136605705,136605656,136605657,50,+,CGATAATGATATAATTTATAGTATGTATATCATCATTCGTGAGTGACTGG,Distal Intergenic,5,136482875,136567490,84616,2,Cux1-214,-38166,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,21,13047,ENSMUSG00000029705,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17830,cg11195951,-0.00000293,0.00000498,-0.589125473,0.556206163,loss,ns,-0.00000705,0.00000845,-0.83409305,0.404870807,neg,ns,0.001917038,0.002476163,0.77419713,0.439404264,pos,ns,0.357135733,-0.000188459,0.0000852,-2.213127143,0.02761698,neg,ns,0.928014967,Gm8512,Gm8512_Intergenic_downstream,10,91962719,91962768,91962719,91962720,50,-,CGCACTGATATAATTCACAGATGGTACTCATTTGGGAGATATTATGAATA,Distal Intergenic,10,92223004,92223474,471,2,Gm8512-201,260755,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,5,667203,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20982,cg06389161,0.0000403,0.00000343,11.75912738,1.20E-26,gain,yes,0.00000486,0.00000583,0.834073095,0.404882034,pos,ns,0.002281136,0.001707654,1.335830765,0.182584448,pos,ns,0.738536218,0.0000175,0.0000587,0.297293518,0.766441545,pos,ns,0.091915885,Spry2,Spry2_Promoter,14,105897896,105897945,105897896,105897897,50,-,CGGGAAGTGAGGTGGGAGGGCTATTGGTTTATTCTTTGTCTACTGGATTA,Promoter (1-2kb),14,105891947,105896819,4873,2,Spry2-201,-1126,Spry2-201,Spry2,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,8,12,24064,ENSMUSG00000022114,conserved gene and region,14,105897634,105897897,264,*,264,21,0.643939394,0.769038702,0.079545455,3.30E-14,CpGisland,TRUE,U1,Pr-A
3104,cg18465053,0.00000616,0.00000679,0.908215566,0.364469837,gain,ns,-0.00000962,0.0000115,-0.833892557,0.404983614,neg,ns,-0.006106919,0.00337806,-1.807818369,0.071603894,neg,ns,1.145063357,0.000141402,0.000116171,1.217183363,0.224460236,pos,ns,0.79099855,Nol4,Nol4_Exon,18,22769799,22769848,22769799,22769800,50,+,CGTTTTCTGGCACGCTCTTGATACTCAGGGAATTGTCGCCTGCATGAGTC,"Exon (Nol4-202/Nol4, exon 8 of 11)",18,22693181,22850754,157574,2,Nol4-203,80906,Nol4-203;Nol4-202;Nol4-204;Nol4-201;Nol4-208;Nol4-206,Nol4;Nol4;Nol4;Nol4;Nol4;Nol4,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,16,21,319211,ENSMUSG00000041923,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8311,cg20498943,-0.00000276,0.00000226,-1.223446175,0.222090367,loss,ns,0.0000032,0.00000383,0.833716308,0.405082795,pos,ns,0.000722368,0.001123505,0.642959463,0.520725682,pos,ns,0.283391003,0.0000304,0.0000386,0.786245322,0.432324366,pos,ns,0.962289642,Zeb2,Zeb2_Intron,2,45000288,45000337,45000336,45000337,50,+,ATGAGCAAATGAGGGGACTTTTCAACACCAAAGCTACCATTCATAATGCG,"Intron (Zeb2-212/Zeb2, intron 7 of 10)",2,44983632,45117395,133764,2,Zeb2-212,117058,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-227;Zeb2-216;Zeb2-229;Zeb2-218;Zeb2-222,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7302,cg17906857,0.0000296,0.0000142,2.076814085,0.038642124,gain,ns,-0.0000202,0.0000242,-0.833705622,0.405088809,neg,ns,-0.010125174,0.007087474,-1.428601194,0.154125663,neg,ns,0.812125041,0.000381273,0.000243738,1.564277983,0.118772518,pos,ns,0.441595354,Gm8176,Gm8176_Intergenic_upstream,1,42233351,42233400,42233351,42233352,50,+,CGCTGAGGAAGTCCCCAGCAGACCTGATTAATTCCAGTCTCTCCAGCTGC,Distal Intergenic,1,42179290,42180388,1099,2,Gm8176-201,-52963,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,13,17,666582,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10827,cg06777818,-0.0000668,0.0000131,-5.117848296,0.000000543,loss,yes,-0.0000185,0.0000222,-0.833633426,0.405129441,neg,ns,-0.01713438,0.006500644,-2.63579711,0.008816291,neg,ns,2.054714083,0.000735124,0.000223557,3.288314304,0.001123791,pos,ns,0.61833605,Gm26959,Gm26959_Intergenic_downstream,18,55549907,55549956,55549907,55549908,50,+,CGTTACCAGGGTAACTGTTAAATTGCTGTGAAAGGCATGGTAATAAAGTA,Distal Intergenic,18,55745251,55746228,978,2,Gm26959-201,196272,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,4,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21118,cg20145008,0.0000877,0.0000146,6.022387986,4.86E-09,gain,yes,0.0000206,0.0000247,0.833615188,0.405139706,pos,ns,0.000531469,0.007245343,0.07335313,0.941572421,pos,ns,0.026146271,0.0000479,0.000249167,0.192143752,0.847755407,pos,ns,0.355036585,Barhl2,Barhl2_Intergenic_upstream,5,106471955,106472004,106471955,106471956,50,-,CGCTAAGTTCTGTCAAGGGAGCTGACTCTGCAGGCATCAAAACCAAACTA,Distal Intergenic,5,106452523,106458166,5644,2,Barhl2-201,-13838,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,27,104382,ENSMUSG00000034384,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
21044,cg02524361,-0.00000612,0.00000215,-2.85062061,0.004655932,loss,ns,-0.00000304,0.00000365,-0.833308436,0.405312376,neg,ns,-0.000239118,0.001068024,-0.223888306,0.822991692,neg,ns,0.084604549,-0.000000646,0.0000367,-0.017581766,0.985983813,neg,ns,0.958114333,Map3k3,Map3k3_Exon,11,106149556,106149605,106149604,106149605,50,-,AGCACAAATGGCGAGAACATGGGTCTGGCTGTGCAATACCTGGACCCCCG,"Exon (Map3k3-201/Map3k3, exon 11 of 16)",11,106084613,106155446,70834,1,Map3k3-201,64943,Map3k3-201;Map3k3-203;Map3k3-202,Map3k3;Map3k3;Map3k3,0;-1607;-2459,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,4,26406,ENSMUSG00000020700,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18779,cg03182466,-0.00000665,0.00000881,-0.754821704,0.450929019,loss,ns,-0.0000125,0.000015,-0.833251062,0.405344676,neg,ns,-0.003002133,0.004382943,-0.684958174,0.49388213,neg,ns,0.306376687,-0.000158938,0.000150729,-1.05445988,0.292493553,neg,ns,0.753162914,Gm5560,Gm5560_Intergenic_downstream,5,97301185,97301234,97301233,97301234,50,+,GAGCAGACAGCTGGCAAGCTCTGTCCCAATATGCTTCCCTGAAAGAGGCG,Distal Intergenic,5,97264828,97265719,892,1,Gm5560-201,36357,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,9,433923,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4727,cg26923395,-0.00000337,0.00000259,-1.302687922,0.193648209,loss,ns,-0.00000366,0.0000044,-0.833170662,0.405389943,neg,ns,-0.000653157,0.001287962,-0.507124894,0.612427739,neg,ns,0.212945147,0.0000349,0.0000443,0.78705375,0.431851697,pos,ns,0.935980859,Mecom,Mecom_Intron,3,30322079,30322128,30322127,30322128,50,+,ATCAATAACGCTTTGATAGATCCCTGTCTGCCCGGTGCTTGACAGGTGCG,"Intron (Mecom-212/Mecom, intron 1 of 15)",3,29951299,30509733,558435,2,Mecom-212,187605,Mecom-212;Mecom-213;Mecom-207;Mecom-208;Mecom-211;Mecom-209,Mecom;Mecom;Mecom;Mecom;Mecom;Mecom,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,80,14013,ENSMUSG00000027684,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13312,cg18502834,0.00000265,0.00000286,0.927303248,0.354490502,gain,ns,-0.00000405,0.00000486,-0.832943677,0.405517755,neg,ns,0.001562988,0.001422846,1.098494471,0.272841061,pos,ns,0.564090271,-0.0000723,0.0000489,-1.476897486,0.140718246,neg,ns,0.074956266,Egr3,Egr3_fiveUTR,14,70077459,70077508,70077459,70077460,50,+,CGCCGAGAAGCTGCCGGTGACCATGAGCAGTTTGCTAAACCAACTGCCTG,Promoter (<=1kb),14,70077203,70079955,2753,1,Egr3-201,256,Egr3-201;Egr3-204;Egr3-203;Egr3-202,Egr3;Egr3;Egr3;Egr3,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,19,13655,ENSMUSG00000033730,conserved gene but different region,14,70077309,70077474,166,*,166,23,0.686746988,1.178395062,0.138554217,2.06E-21,CpGisland,TRUE,U3,Pr-B
7961,cg07451261,0.0000185,0.0000113,1.637478849,0.102545094,gain,ns,-0.000016,0.0000192,-0.832821901,0.405586336,neg,ns,-0.014765798,0.005632764,-2.621412374,0.00918852,neg,ns,2.036754423,0.000479357,0.00019371,2.474606501,0.013873082,pos,ns,0.218737203,Pax2,Pax2_Intergenic_upstream,19,44670939,44670988,44670939,44670940,50,+,CGGCCACCGCACTGCAGCGCGGCACCAGCAGTCTATGACAAAAACATTAT,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-85057,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,19,44670871,44670957,87,*,87,8,0.701149425,0.899224806,0.091954023,0.00000415,CpGisland,TRUE,U13,Hc-P
24130,cg00585108,-0.0000013,0.0000018,-0.721998888,0.47083941,loss,ns,-0.00000254,0.00000305,-0.83275225,0.405625564,neg,ns,0.000624703,0.000894828,0.698126178,0.485621618,pos,ns,0.313701988,-0.0000201,0.0000308,-0.65398878,0.513603874,neg,ns,0.961886372,Pde5a,Pde5a_Exon,3,122818017,122818066,122818017,122818018,50,+,CGGATGTTTACTGACCTCAACCTTGTGCAGAACTTCCAGATGAAACATGA,"Exon (Pde5a-201/Pde5a, exon 12 of 21)",3,122728947,122859374,130428,1,Pde5a-201,89070,Pde5a-201;Pde5a-204,Pde5a;Pde5a,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,242202,ENSMUSG00000053965,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8889,cg07373698,0.000011,0.00000457,2.40804943,0.016621636,gain,ns,0.00000646,0.00000776,0.832657223,0.405679089,pos,ns,0.00238477,0.002272422,1.049439855,0.294793168,pos,ns,0.530482586,-0.0000762,0.0000781,-0.975067782,0.330286891,neg,ns,0.900472359,Cyfip2,Cyfip2_Exon,11,46260852,46260901,46260900,46260901,50,+,CCTTTGGGGTCCTTCTCCCCTCTCAAGCATGGGTCATTAGGGGGCTCTCG,"Exon (Cyfip2-205/Cyfip2, exon 15 of 31)",11,46193850,46312358,118509,2,Cyfip2-205,51457,Cyfip2-205;Cyfip2-201;Cyfip2-202;Cyfip2-204,Cyfip2;Cyfip2;Cyfip2;Cyfip2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,8,76884,ENSMUSG00000020340,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22568,cg21531455,0.0000986,0.0000134,7.334450819,1.96E-12,gain,yes,-0.000019,0.0000228,-0.832545752,0.40574188,neg,ns,0.01401709,0.006690697,2.095011806,0.036981182,pos,ns,1.432019211,-0.000364226,0.000230093,-1.582953747,0.114451644,neg,ns,0.460756729,Rpl19-ps10,Rpl19-ps10_Intergenic_downstream,7,115193587,115193636,115193635,115193636,50,-,ATTCTCTCCCTGCTGAAACAATAGACAGTGATTAAAGCGCAGCTAATCCG,Distal Intergenic,7,115172056,115172385,330,1,Rpl19-ps10-201,21580,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,29,668472,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18735,cg06767010,0.00000513,0.00000249,2.060665751,0.040168952,gain,ns,0.00000352,0.00000423,0.832527702,0.405752048,pos,ns,0.001277258,0.001238567,1.031238604,0.303232817,pos,ns,0.5182238,-0.0000666,0.0000426,-1.564747988,0.118662222,neg,ns,0.029762492,Spsb4,Spsb4_fiveUTR,9,97018836,97018885,97018836,97018837,50,+,CGATCTGGCTGAGCTCATCCCTGAAGGCCACTAATCCAATAGCCGCGGAA,Promoter (<=1kb),9,96943482,97018843,75362,2,Spsb4-201,0,Spsb4-201;Spsb4-202,Spsb4;Spsb4,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,3,211949,ENSMUSG00000046997,conserved gene and region,9,97018208,97019241,1034,*,1034,100,0.691489362,0.811706153,0.096711799,3.21E-74,CpGisland,TRUE,U3,Pr-B
21474,cg12674712,-0.0000227,0.00000507,-4.48103521,0.0000105,loss,ns,0.00000717,0.00000861,0.832516261,0.405758494,pos,ns,-0.005606081,0.00252382,-2.221267669,0.027055004,neg,ns,1.567752404,0.000123188,0.0000868,1.419320196,0.156810405,pos,ns,0.925110521,Bcl11b,Bcl11b_Intron,12,107928454,107928503,107928454,107928455,50,-,CGTGCCACAAATGGTATTTTACTCTCAATAAGAACTCGAGCTGAGTTTAT,"Intron (Bcl11b-201/Bcl11b, intron 3 of 3)",12,107910403,108003602,93200,2,Bcl11b-201,75099,Bcl11b-201;Bcl11b-202;Bcl11b-203,Bcl11b;Bcl11b;Bcl11b,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,39,58208,ENSMUSG00000048251,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20683,cg23985931,0.0000394,0.0000053,7.436892372,1.02E-12,gain,yes,-0.00000749,0.000009,-0.832361757,0.405845537,neg,ns,0.006821193,0.00263543,2.588265909,0.010100416,pos,ns,1.995660741,-0.0000812,0.0000906,-0.895397133,0.371269549,neg,ns,0.068382837,Pou4f1,Pou4f1_Exon,14,104459330,104459379,104459378,104459379,50,-,AAAGCTCAATAGCTGCCTGAAAATATTGCATTTTATATCACCAAAGGGCG,"Exon (D130079A08Rik-202/D130079A08Rik-202, exon 1 of 5)",14,104463973,104465365,1393,2,Pou4f1-202,6035,Pou4f1-201;Pou4f1-202,Pou4f1;Pou4f1,0;5986,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,31,18996,ENSMUSG00000048349,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
16568,cg23222370,0.0000511,0.00000944,5.408355704,0.000000127,gain,yes,-0.0000134,0.000016,-0.832343676,0.405855725,neg,ns,0.007110815,0.004700672,1.512723123,0.131368779,pos,ns,0.881507835,-0.0000172,0.000161656,-0.106631992,0.915149909,neg,ns,0.133746762,Rpl31-ps16,Rpl31-ps16_Intergenic_upstream,17,85487194,85487243,85487242,85487243,50,+,CAATACCTAACTGAGCCTTTCAGACAGGACAACGGATGCACAAAAGCTCG,Distal Intergenic,17,85498633,85499008,376,1,Rpl31-ps16-201,-11390,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,13,668850,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
9878,cg16105536,-0.00000783,0.00000265,-2.953857801,0.003378459,loss,ns,0.00000375,0.0000045,0.832285862,0.405888299,pos,ns,0.000198196,0.001319306,0.15022713,0.880683119,pos,ns,0.055180328,-0.000088,0.0000454,-1.940158659,0.053267039,neg,ns,0.936484196,Gm49908,Gm49908_Intergenic_upstream,17,51282615,51282664,51282615,51282616,50,-,CGCAAATGCAGTAATTATATGTGTAATTTGGCAGCTGGGTTTGAAAATTT,Distal Intergenic,17,51236771,51237062,292,2,Gm49908-201,-45602,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,9,9,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16113,cg09916849,-0.0000259,0.0000052,-4.986459877,0.00000103,loss,yes,-0.00000735,0.00000883,-0.832270988,0.40589668,neg,ns,-0.005057822,0.002587002,-1.955090015,0.051470791,neg,ns,1.288439154,0.000053,0.000089,0.596045168,0.551580003,pos,ns,0.919765871,Bnc2,Bnc2_Intron,4,84426362,84426411,84426410,84426411,50,+,TTTTCTTTTATACATAGCTTTATCCTATAATTTTGTCCCTGTTGGGCACG,"Intron (Bnc2-201/Bnc2, intron 4 of 7)",4,84275095,84675034,399940,2,Bnc2-201,248623,Bnc2-201;Bnc2-202;Bnc2-214;Bnc2-215;Bnc2-206;Bnc2-211;Bnc2-205;Bnc2-217;Bnc2-207;Bnc2-212;Bnc2-203;Bnc2-209;Bnc2-221;Bnc2-204;Bnc2-220;Bnc2-208;Gm12421-201,Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Gm12421,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;2713,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,91,242509,ENSMUSG00000028487,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2658,cg05326840,-0.00000313,0.0000014,-2.231935908,0.026333564,loss,ns,-0.00000198,0.00000238,-0.832238025,0.405915254,neg,ns,-0.000852866,0.000698205,-1.22151234,0.222820207,neg,ns,0.652045427,0.0000153,0.000024,0.636009791,0.525239308,pos,ns,0.972031708,Vcl,Vcl_Exon,14,21027171,21027220,21027219,21027220,50,+,TGGAAGACGATTACGAACCTGAGCTGCTGTTAATGCCATCCAATCAGCCG,"Exon (Vcl-202/Vcl, exon 3 of 3)",14,20929398,21033676,104279,1,Vcl-201,97773,Ap3m1-206;Vcl-201;Vcl-202,Ap3m1;Vcl;Vcl,25230;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,8,22330,ENSMUSG00000021823,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18168,cg24594294,-0.00000311,0.00000236,-1.317290707,0.188714007,loss,ns,-0.00000334,0.00000401,-0.832160977,0.405958669,neg,ns,0.000745238,0.001175736,0.633848433,0.526647141,pos,ns,0.278480269,-0.0000439,0.0000404,-1.086751841,0.277990774,neg,ns,0.939678427,Luc7l3,Luc7l3_threeUTR,11,94292471,94292520,94292471,94292472,50,-,CGCTGTGTGAGGTATGGTAGTCAGCTGCAATAATTCATAAACCCTACACT,3' UTR,11,94287890,94321958,34069,2,Luc7l3-209,29438,Luc7l3-209;Luc7l3-205;Luc7l3-203;Luc7l3-201;Luc7l3-202;Luc7l3-207;Luc7l3-204;Luc7l3-210;Luc7l3-206;Luc7l3-208,Luc7l3;Luc7l3;Luc7l3;Luc7l3;Luc7l3;Luc7l3;Luc7l3;Luc7l3;Luc7l3;Luc7l3,0;0;0;0;0;0;0;5698;6511;7711,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,7,7,67684,ENSMUSG00000020863,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11616,cg25793931,0.0000344,0.00000462,7.458792341,8.84E-13,gain,yes,0.00000653,0.00000784,0.832035401,0.406029436,pos,ns,0.007237932,0.002298144,3.14946797,0.001795113,pos,ns,2.745908194,-0.0000699,0.000079,-0.884994893,0.3768453,neg,ns,0.108756142,Emx2,Emx2_Intergenic_downstream,19,59466319,59466368,59466367,59466368,50,+,CTTTGTTAACATCTTGCCTTGAAAAGTTAAGATTAGACATTCCGTGCACG,Distal Intergenic,19,59462802,59464215,1414,1,Emx2-203,3517,Emx2-201;Emx2-202;Emx2-203,Emx2;Emx2;Emx2,0;6800;3517,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,15,23,13797,ENSMUSG00000043969,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
27514,cg14596661,-0.0000342,0.00000965,-3.544661659,0.000453713,loss,ns,0.0000136,0.0000164,0.831900131,0.406105674,pos,ns,-0.002946964,0.004802178,-0.613672458,0.539881822,neg,ns,0.267701295,0.0000833,0.000165146,0.504396042,0.614341416,pos,ns,0.50706933,Sall4,Sall4_Intergenic_upstream,2,168783118,168783167,168783118,168783119,50,+,CGTTTGCTTATAAAGAATTTCCATAAACATTTCTGAGGATGTGTATTAGG,Distal Intergenic,2,168756614,168767943,11330,2,Sall4-204,-15175,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,6,99377,ENSMUSG00000027547,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
161,cg13165311,-0.000011,0.0000157,-0.698235287,0.485553488,loss,ns,0.0000222,0.0000267,0.831862617,0.406126818,pos,ns,-0.002047872,0.00781651,-0.261993191,0.793500692,neg,ns,0.10045269,-0.000155974,0.000268809,-0.580239317,0.562174754,neg,ns,0.581329504,Gria4,Gria4_Exon,9,4427102,4427151,4427150,4427151,50,+,GCCTGCCTCACTGAGTTTCAAAACGGCAAGGTTTACAGGAGTTCTTCACG,"Exon (Gria4-202/Gria4, exon 15 of 17)",9,4417896,4796142,378247,2,Gria4-202,368991,Gria4-202;Gria4-204;Gria4-201,Gria4;Gria4;Gria4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,16,18,14802,ENSMUSG00000025892,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13963,cg21409709,-0.00001,0.00001,-1.001327859,0.317449284,loss,ns,0.0000141,0.000017,0.831812171,0.406155253,pos,ns,0.00420118,0.004975882,0.844308677,0.399148023,pos,ns,0.398866017,0.0000226,0.00017112,0.131862193,0.895178834,pos,ns,0.893914026,Atf2,Atf2_Exon,2,73853831,73853880,73853879,73853880,50,-,ATTTCAGTGTCATCTCATGTTTATGTTTATGGACAGCCAAATGATCCTCG,"Exon (Atf2-201/Atf2, exon 5 of 14)",2,73816509,73892536,76028,2,Atf2-205,38656,Atf2-205;Atf2-202;Atf2-201;Atf2-204;Atf2-206;Atf2-218;Atf2-203;Atf2-207;Atf2-219;Atf2-215;Atf2-212;Atf2-214;Atf2-216;Atf2-210;Atf2-211,Atf2;Atf2;Atf2;Atf2;Atf2;Atf2;Atf2;Atf2;Atf2;Atf2;Atf2;Atf2;Atf2;Atf2;Atf2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;-3227,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,11909,ENSMUSG00000027104,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11473,cg02700726,0.0000052,0.00000637,0.816573053,0.414799511,gain,ns,-0.00000899,0.0000108,-0.831504523,0.406328688,neg,ns,0.012597079,0.003168117,3.976203331,0.0000872,pos,ns,4.059501246,-0.000460472,0.000108951,-4.226401836,0.0000313,neg,ns,0.104200469,Clk1,Clk1_Exon,1,58420269,58420318,58420269,58420270,50,+,CGAGTGAATTCAGGGCAGAATACGAAATTCATTCAGCGGGGAGATATTCA,"Exon (Clk1-212/Clk1, exon 3 of 11)",1,58410189,58424066,13878,2,Clk1-212,3748,Clk1-212;Clk1-202;Clk1-201;Clk1-210;Clk1-211;Clk1-213;Clk1-206;Clk1-204;Clk1-205;Clk1-209,Clk1;Clk1;Clk1;Clk1;Clk1;Clk1;Clk1;Clk1;Clk1;Clk1,0;-3504;0;0;0;0;0;0;-2843;3748,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,12747,ENSMUSG00000026034,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27948,cg07081182,-0.00000232,0.00000165,-1.406036774,0.160714733,loss,ns,-0.00000233,0.0000028,-0.831503096,0.406329492,neg,ns,-0.000161971,0.000819756,-0.197584925,0.843499323,neg,ns,0.073915262,-0.0000342,0.0000282,-1.21329425,0.225941,neg,ns,0.961967634,Rps6kc1,Rps6kc1_Intron,1,190853849,190853898,190853897,190853898,50,+,ATTAATGTGTCAAGCCAAACTAATGCATTTTTTATGGTGTCCATGCTTCG,"Intron (Rps6kc1-204/Rps6kc1, intron 6 of 12)",1,190700202,190911747,211546,2,Rps6kc1-204,57849,Rps6kc1-204;Rps6kc1-203;Rps6kc1-201;Rps6kc1-208,Rps6kc1;Rps6kc1;Rps6kc1;Rps6kc1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,29,320119,ENSMUSG00000089872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24180,cg25387936,-0.000000956,0.00000404,-0.236610032,0.813115604,loss,ns,-0.00000571,0.00000686,-0.83143761,0.406366416,neg,ns,-0.00206353,0.002011132,-1.026054273,0.305665959,neg,ns,0.514752925,-0.0000399,0.0000692,-0.576618682,0.56461552,neg,ns,0.912021129,Tnrc6a,Tnrc6a_Exon,7,123180540,123180589,123180588,123180589,50,-,AATGGCAATCCCAGTATGTTTGGTGTTGGAAACACAGCAGCACAACCCCG,"Exon (Tnrc6a-201/Tnrc6a, exon 13 of 24)",7,123124177,123193987,69811,1,Tnrc6a-203,56363,Tnrc6a-203;Tnrc6a-201;Tnrc6a-210;Tnrc6a-205;Tnrc6a-202;Tnrc6a-207;Tnrc6a-208,Tnrc6a;Tnrc6a;Tnrc6a;Tnrc6a;Tnrc6a;Tnrc6a;Tnrc6a,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,17,24,233833,ENSMUSG00000052707,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25450,cg27404885,-0.00000405,0.00000348,-1.164884864,0.244961208,loss,ns,0.00000491,0.00000591,0.831393617,0.406391221,pos,ns,-0.00039682,0.001731272,-0.22920718,0.818859037,neg,ns,0.086790854,0.00000794,0.0000595,0.133372279,0.893985504,pos,ns,0.970330061,Ephb2,Ephb2_Exon,4,136675427,136675476,136675427,136675428,50,-,CGTGCCCGCACCTGGAAGACATAGATGGCGCCGGCTTTGAGGCCCTGCAC,"Exon (Ephb2-202/Ephb2, exon 7 of 16)",4,136647539,136835988,188450,2,Ephb2-202,160512,Ephb2-202;Ephb2-201;Ephb2-203;Ephb2-206,Ephb2;Ephb2;Ephb2;Ephb2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,15,13844,ENSMUSG00000028664,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5639,cg11597255,-0.0000112,0.0000075,-1.49176933,0.136776532,loss,ns,0.0000106,0.0000127,0.831095255,0.406559479,pos,ns,-0.012646433,0.003733816,-3.386999541,0.000797732,neg,ns,3.098142901,0.000247804,0.000128406,1.929851562,0.054537446,pos,ns,0.875328664,Mapkap1,Mapkap1_Intron,2,34449044,34449093,34449044,34449045,50,+,CGAGCCTGAAGTGAAAATTAATATGAATGCTGTGGCAATTAACACATACT,"Intron (Mapkap1-210/Mapkap1, intron 4 of 4)",2,34406771,34497716,90946,1,Mapkap1-210,42273,Mapkap1-210;Mapkap1-204;Mapkap1-211;Mapkap1-202;Mapkap1-201;Mapkap1-209;Mapkap1-203;Mapkap1-207;Mapkap1-206,Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,59,227743,ENSMUSG00000038696,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4892,cg15085244,-0.0000138,0.0000051,-2.700093305,0.007312713,loss,ns,-0.0000072,0.00000866,-0.831058022,0.406580479,neg,ns,-0.003061154,0.002536851,-1.206674692,0.228477455,neg,ns,0.641156647,-0.000102184,0.0000872,-1.171264995,0.242391755,neg,ns,0.939558064,Zfp513,Zfp513_Exon,5,31199592,31199641,31199640,31199641,50,+,CTGTAGTTGCAAAGGCTACACCGAAAAGGTTTGTCACCAGAGTGGATGCG,"Exon (Zfp513-202/Zfp513, exon 4 of 4)",5,31198981,31202303,3323,2,Zfp513-202,2662,Ppm1g-205;Ppm1g-201;Ppm1g-206;Snx17-201;Snx17-205;Snx17-202;Snx17-204;Snx17-210;Snx17-208;Snx17-207;Snx17-211;Snx17-209;Snx17-206;Snx17-203;Zfp513-202;Zfp513-201;Zfp513-205;Zfp513-207;Zfp513-203;Zfp513-204;Zfp513-208;Zfp513-206,Ppm1g;Ppm1g;Ppm1g;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Zfp513;Zfp513;Zfp513;Zfp513;Zfp513;Zfp513;Zfp513;Zfp513,0;0;5442;0;0;0;0;0;0;0;4749;0;0;0;0;0;0;645;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,15,15,101023,ENSMUSG00000043059,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
74,cg07190960,-0.0000729,0.0000153,-4.777483643,0.00000274,loss,ns,0.0000215,0.0000259,0.831013998,0.40660531,pos,ns,-0.021428959,0.007593252,-2.822105529,0.00507913,neg,ns,2.294210665,0.00041633,0.000261131,1.594331914,0.111880712,pos,ns,0.75764529,Tfpi2,Tfpi2_Intergenic_downstream,6,3926358,3926407,3926358,3926359,50,-,CGATTGTCTGTGGCAGTGGGGAAATGAAACTGTCACATGAATTACAAAAG,Distal Intergenic,6,3962595,3968376,5782,2,Tfpi2-201,42018,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,21789,ENSMUSG00000029664,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22109,cg17776527,-0.00000947,0.00000317,-2.988430128,0.003028305,loss,ns,0.00000447,0.00000538,0.830998017,0.406614324,pos,ns,0.001560087,0.001576358,0.98967838,0.32310318,pos,ns,0.490658768,-0.0000392,0.0000542,-0.722330488,0.470635852,neg,ns,0.965634733,Eif4g2,Eif4g2_threeUTR,7,111072604,111072653,111072604,111072605,50,-,CGGAATGAATTTTCGCAGTGGTTAGGTCAAATGCAGTTACATCATAGCAA,3' UTR,7,111067750,111083030,15281,2,Eif4g2-213,10377,Eif4g2-213;Eif4g2-206;Eif4g2-207;Eif4g2-208;Eif4g2-214;Eif4g2-202;Eif4g2-204;Eif4g2-211;Eif4g2-210,Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2,0;0;0;0;1596;2046;2732;3556;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,22,13690,ENSMUSG00000005610,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12601,cg23972152,0.00000179,0.000000983,1.816599962,0.070244031,gain,ns,0.00000139,0.00000167,0.830933473,0.406650731,pos,ns,0.000833862,0.000489086,1.704938532,0.089207723,pos,ns,1.049597546,-0.00000768,0.0000168,-0.456549996,0.64831424,neg,ns,0.968626057,Zfp609,Zfp609_Exon,9,65794679,65794728,65794679,65794680,50,+,CGGTTTAGTTCCCAAAGGATTGAGCGCTGCCCCAGGCTCAATAGCTATAC,"Exon (Zfp609-201/Zfp609, exon 2 of 10)",9,65692391,65827564,135174,2,Zfp609-201,32836,Zfp609-201;Zfp609-203,Zfp609;Zfp609,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,10,214812,ENSMUSG00000040524,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5814,cg20710888,-2.49E-08,0.000000352,-0.070804441,0.943599052,loss,ns,0.000000497,0.000000598,0.830881418,0.406680096,pos,ns,0.000449883,0.000175334,2.565866322,0.010761678,pos,ns,1.968119998,-0.0000155,0.00000603,-2.563478604,0.010834399,neg,ns,0.007547276,Zfp292,Zfp292_fiveUTR,4,34882942,34882991,34882990,34882991,50,+,TACGCACCTGGGTCACGTGATAACACAATGCCACGTTCGGCGGGGTCACG,Promoter (<=1kb),4,34803113,34882960,79848,2,Zfp292-201,0,Zfp292-202;Zfp292-201,Zfp292;Zfp292,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,5,30046,ENSMUSG00000039967,conserved gene but different region,4,34882327,34883150,824,*,824,108,0.726941748,0.992107023,0.131067961,4.29E-96,CpGisland,TRUE,U1,Pr-A
3757,cg23170538,-0.0000159,0.0000054,-2.937576092,0.003555869,loss,ns,0.00000762,0.00000918,0.830710913,0.406776286,pos,ns,0.000500113,0.002688524,0.186017835,0.852552437,pos,ns,0.0692789,0.0000695,0.0000925,0.751169634,0.453120418,pos,ns,0.924982183,5730522E02Rik,5730522E02Rik_Intron,11,25287578,25287627,25287626,25287627,50,+,CTGACTGTGGGATGTCATGTACGTACCCTATAGCTATGCGCGGCAATTCG,"Intron (4933427E13Rik-204/4933427E13Rik-204, intron 1 of 1)",11,25602816,25620098,17283,2,5730522E02Rik-205,332471,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,90,70626,NA,mapped to different genes,11,25287599,25287683,85,*,85,8,0.505882353,1.574074074,0.094117647,0.00000348,CpGisland,TRUE,U15,NS
9234,cg07026489,-0.00000475,0.00000252,-1.883829998,0.060523726,loss,ns,-0.00000356,0.00000428,-0.830645171,0.406813378,neg,ns,-0.001798895,0.001254493,-1.433961464,0.152591154,neg,ns,0.816470644,0.0000895,0.0000431,2.07379831,0.038923443,pos,ns,0.95859369,Cadm1,Cadm1_Intron,9,47806983,47807032,47806983,47806984,50,+,CGAGGCGTAAAATGATCCCCCAGAAAATGTACTAGGCTTTACCTCATTAC,"Intron (Cadm1-204/Cadm1, intron 5 of 9)",9,47530173,47853385,323213,1,Cadm1-204,276810,Cadm1-204;Cadm1-209;Cadm1-206;Cadm1-202;Cadm1-203;Cadm1-205;Cadm1-211;Cadm1-208;Cadm1-201,Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,77,54725,ENSMUSG00000032076,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11200,cg23743304,0.0000463,0.00000563,8.237652438,4.98E-15,gain,yes,0.00000794,0.00000956,0.83058579,0.406846883,pos,ns,0.012533856,0.002799711,4.476838816,0.0000107,pos,ns,4.972324757,-0.000263365,0.0000963,-2.735357011,0.006590117,neg,ns,0.034833334,Satb2,Satb2_fiveUTR,1,56969814,56969863,56969814,56969815,50,+,CGCTCCATGCTGCTCCGACTCGGAGACAAAGTTCCCACCGGCAGGTCGCA,Promoter (<=1kb),1,56948134,56969840,21707,2,Satb2-203,0,Satb2-201;Satb2-202;Satb2-205;Satb2-203;Satb2-204,Satb2;Satb2;Satb2;Satb2;Satb2,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,9,33,212712,ENSMUSG00000038331,conserved gene but different region,1,56969620,56969894,275,*,275,29,0.705454546,0.850848181,0.105454546,4.32E-23,CpGisland,TRUE,U3,Pr-B
10225,cg12997720,0.0000564,0.00000503,11.20616776,1.07E-24,gain,yes,-0.0000071,0.00000854,-0.830539591,0.406872951,neg,ns,0.006289648,0.002502747,2.513097616,0.012474661,pos,ns,1.90397125,0.00000911,0.0000861,0.105832651,0.915783579,pos,ns,0.131399215,Hoxa11,Hoxa11_Exon,6,52245967,52246016,52246015,52246016,50,+,GGCTTCCTTTCTTTGTAGCCACCTCAGGGGAAGCAACAGATCGTCACTCG,Promoter (<=1kb),6,52242106,52245810,3705,2,Hoxa11-201,-157,Hoxa11-201;Hoxa11-202,Hoxa11;Hoxa11,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,15,18,15396,ENSMUSG00000038210,mapped to different genes,6,52246008,52246200,193,*,193,16,0.658031088,0.771614193,0.082901554,3.24E-11,CpGisland,TRUE,U13,Hc-P
5335,cg24782168,-0.000017,0.00000809,-2.098995512,0.036625845,loss,ns,0.0000114,0.0000137,0.830473222,0.406910401,pos,ns,0.003334064,0.004025557,0.828224307,0.408180651,pos,ns,0.389147586,-0.00000551,0.000138439,-0.039771461,0.96830093,neg,ns,0.843074047,Nkx1-1,Nkx1-1_Intergenic_upstream,5,33502371,33502420,33502419,33502420,50,-,GCCTCTCAGTTAAGATGTTATTTAGTTCTAATTATCAGATAATGAACTCG,Distal Intergenic,5,33430734,33433976,3243,2,Nkx1-1-201,-68444,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,13,672284,ENSMUSG00000029112,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21743,cg14950255,-0.00000763,0.00000472,-1.61827466,0.106620375,loss,ns,-0.00000665,0.00000801,-0.83042587,0.406937123,neg,ns,-0.00135233,0.002346961,-0.576204626,0.564894973,neg,ns,0.24803229,-0.0000145,0.0000807,-0.179704085,0.857502291,neg,ns,0.915672056,Zfhx3,Zfhx3_Exon,8,108955988,108956037,108955988,108955989,50,+,CGCAGGCCCTGATGGGGCTGTCCCCAGGCTCCCTACTGCAGCAGTACCAG,"Exon (Zfhx3-204/Zfhx3, exon 16 of 16)",8,107942644,108961630,1018987,1,Zfhx3-204,1013344,Zfhx3-204;Zfhx3-201,Zfhx3;Zfhx3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,46,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21566,cg04574209,-0.00000168,0.00000245,-0.6855399,0.493515615,loss,ns,-0.00000345,0.00000416,-0.830399141,0.406952207,neg,ns,-0.002999827,0.001218842,-2.461210597,0.014391436,neg,ns,1.841895865,0.0000308,0.0000419,0.734847673,0.462987791,pos,ns,0.884944065,Usp4,Usp4_Exon,9,108350926,108350975,108350926,108350927,50,-,CGGTGGTTCAAGCAGTGGAAGAAGTATGTGGGCTTTGACAGCTGGGACAT,"Exon (Usp4-201/Usp4, exon 2 of 22)",9,108347853,108392545,44693,1,Usp4-201,3073,Usp4-201;Usp4-207;Usp4-203;Usp4-209,Usp4;Usp4;Usp4;Usp4,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,22258,ENSMUSG00000032612,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10309,cg16359550,0.00000313,0.00000319,0.983013226,0.326367499,gain,ns,0.00000449,0.00000541,0.830307931,0.407003682,pos,ns,0.003858201,0.00158545,2.433505279,0.015518253,pos,ns,1.809157164,-0.000145849,0.0000545,-2.674979058,0.007870089,neg,ns,0.079416566,AI593442,AI593442_Promoter,9,52679792,52679841,52679792,52679793,50,+,CGGTGACGTCAGGCAGCCACCGCCAGGGCTCCAAGCCACCCCTCAGGCCC,Promoter (<=1kb),9,52673042,52679780,6739,2,AI593442-203,-12,AI593442-203;AI593442-201;AI593442-202,AI593442;AI593442;AI593442,0;0;-355,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,2,330941,ENSMUSG00000078307,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
19298,cg22070870,-0.00000114,0.00000493,-0.231032596,0.817441885,loss,ns,0.00000696,0.00000838,0.830287585,0.407015165,pos,ns,0.004475441,0.002454822,1.823122221,0.069247874,pos,ns,1.159593554,-0.000150933,0.0000844,-1.787861709,0.074774962,neg,ns,0.919195563,Foxp1,Foxp1_Exon,6,98945343,98945392,98945391,98945392,50,-,TTACCTGCCTAATTAAAGATGCATATGTAAATGGTGGTCTAACTTCTGCG,"Exon (Foxp1-206/Foxp1, exon 13 of 18)",6,98925338,99266515,341178,2,Foxp1-206,321123,Foxp1-206;Foxp1-204;Foxp1-220;Foxp1-230;Foxp1-225;Foxp1-201;Foxp1-205;Foxp1-207;Foxp1-208;Foxp1-226;Foxp1-228;Foxp1-221;Foxp1-222;Foxp1-210,Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,87,108655,ENSMUSG00000030067,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4172,cg01324791,-0.00000691,0.00000474,-1.458913261,0.145601458,loss,ns,-0.00000668,0.00000805,-0.830142639,0.407096976,neg,ns,-0.004480116,0.002358134,-1.899856707,0.058379749,neg,ns,1.233737774,-0.0000759,0.0000811,-0.935634671,0.350189589,neg,ns,0.848901652,Egln2,Egln2_Exon,7,27160286,27160335,27160334,27160335,50,-,ACCTTAACGTCCCAGTTCTGATTCAGGTAATAGATACAGGTGATGCAGCG,"Exon (Egln2-201/Egln2, exon 3 of 6)",7,27158658,27166802,8145,2,Egln2-201,6467,Cyp2t4-202;Cyp2t4-201;Egln2-201;Egln2-204;Egln2-202,Cyp2t4;Cyp2t4;Egln2;Egln2;Egln2,6572;5204;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,112406,ENSMUSG00000058709,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
679,cg09708506,-0.00000129,0.000000645,-2.003627222,0.045979952,loss,ns,0.00000091,0.0000011,0.830142324,0.407097153,pos,ns,0.000407445,0.000321207,1.26848342,0.205577093,pos,ns,0.687025279,-0.0000166,0.000011,-1.498309147,0.135070518,neg,ns,0.979087412,Tab2,Tab2_Exon,10,7910059,7910108,7910107,7910108,50,-,GTGGCACAGGACCTACAAATCCAATATTGTCATAAAAGTTATGAATAGCG,"Exon (Tab2-204/Tab2, exon 6 of 7)",10,7905653,7956230,50578,2,Tab2-204,46122,Tab2-204;Tab2-203;Tab2-202;Tab2-205,Tab2;Tab2;Tab2;Tab2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,68652,ENSMUSG00000015755,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9943,cg27742797,0.0000699,0.00000941,7.433179445,1.04E-12,gain,yes,0.0000133,0.000016,0.830044044,0.40715263,pos,ns,0.012984506,0.004681193,2.773759997,0.005877118,pos,ns,2.230835609,-0.000412766,0.000160986,-2.563988871,0.010818822,neg,ns,0.417912487,Hs6st2,Hs6st2_Exon,X,51681247,51681296,51681295,51681296,50,+,AGGCCCCGAGTGAGCAGGGCCCGGCAGAGGGAGCCCAGGTCCCAGCGTCG,Promoter (<=1kb),20,51387212,51681703,294492,2,Hs6st2-201,407,Hs6st2-201;Hs6st2-202;Hs6st2-204;Hs6st2-205;Hs6st2-203,Hs6st2;Hs6st2;Hs6st2;Hs6st2;Hs6st2,0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,6,50786,ENSMUSG00000062184,conserved gene and region,X,51680404,51681589,1186,*,1186,115,0.697301855,0.813413965,0.096964587,2.22E-85,CpGisland,TRUE,U3,Pr-B
4264,cg21633990,-0.0000205,0.00000751,-2.730318866,0.006689241,loss,ns,0.0000106,0.0000128,0.82973701,0.407325974,pos,ns,-0.011172211,0.003737974,-2.9888414,0.003024347,neg,ns,2.519368357,0.000295587,0.000128549,2.29941442,0.022145897,pos,ns,0.753576369,Col5a1,Col5a1_Exon,2,28028976,28029025,28029024,28029025,50,-,ACTTCTTGGCCCAAAGAAAACCCGGGCTCCTGGTTCAGTGAATTCAAGCG,"Exon (Col5a1-201/Col5a1, exon 64 of 66)",2,27886425,28039514,153090,1,Col5a1-201,142551,Col5a1-201;Col5a1-202;Col5a1-203,Col5a1;Col5a1;Col5a1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,12831,ENSMUSG00000026837,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
609,cg03723285,-0.0000196,0.00000649,-3.021087416,0.002728415,loss,ns,0.00000914,0.000011,0.829636125,0.40738294,pos,ns,-0.003846434,0.003228197,-1.191511505,0.23436426,neg,ns,0.630108617,-0.000159152,0.000111017,-1.433578243,0.152700471,neg,ns,0.852180691,Rps6ka2,Rps6ka2_Exon,17,7251550,7251599,7251550,7251551,50,+,CGGAGGAGGATGTCAAGTTCTACCTGGCTGAGCTGGCCTTGGCTTTAGAC,"Exon (Rps6ka2-201/Rps6ka2, exon 6 of 21)",17,7170115,7303315,133201,1,Rps6ka2-201,81435,Rps6ka2-201;Rps6ka2-204;Rps6ka2-203,Rps6ka2;Rps6ka2;Rps6ka2,0;0;-4262,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,20112,ENSMUSG00000023809,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1357,cg18780131,0.0000275,0.00000431,6.371315092,6.77E-10,gain,yes,-0.00000608,0.00000733,-0.829485529,0.407467986,neg,ns,0.003815839,0.002145996,1.77812054,0.076364172,pos,ns,1.117110355,-0.00018396,0.0000738,-2.492659028,0.013200766,neg,ns,0.098908456,Sox1,Sox1_Exon,8,12430293,12430342,12430341,12430342,50,+,CAAAGCTGATTACAAGCTTCAGCGCATTCCTGAAGGAGCCAAAAGCGACG,"Exon (Sox1ot-201/Sox1ot-201, exon 7 of 9)",8,12395295,12400126,4832,1,Sox1-201,34998,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,15,20664,ENSMUSG00000096014,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
8294,cg04048194,0.0000124,0.00000523,2.378703456,0.017979053,gain,ns,-0.00000736,0.00000888,-0.829339132,0.407550671,neg,ns,-0.000307946,0.002600892,-0.118400029,0.905827385,neg,ns,0.042954554,-0.0000246,0.0000894,-0.274962317,0.783528353,neg,ns,0.779559952,Ebf1,Ebf1_Intron,11,44963723,44963772,44963771,44963772,50,-,TGAAAACAAGATGTGTTAAATCAATGCGGTTTATCGCCTGCCTATTCCCG,"Intron (Ebf1-203/Ebf1, intron 10 of 15)",11,44617317,45004995,387679,1,Ebf1-203,346406,Ebf1-203;Ebf1-202;Ebf1-201;Ebf1-206,Ebf1;Ebf1;Ebf1;Ebf1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,80,13591,ENSMUSG00000057098,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23861,cg21215767,0.000126509,0.000013,9.719729727,1.15E-19,gain,yes,0.0000183,0.0000221,0.829338465,0.407551048,pos,ns,0.010302567,0.006478054,1.590379962,0.112768429,pos,ns,0.947812469,-0.0000287,0.00022278,-0.128734256,0.897651407,neg,ns,0.307020814,En1,En1_threeUTR,1,120607917,120607966,120607917,120607918,50,+,CGCCGCTACAAGCCAAAGATTTTATTATGTTCAGAAACCTGTAGTCTGAA,3' UTR,1,120602418,120607992,5575,1,En1-201,5499,En1-201,En1,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,36,13798,ENSMUSG00000058665,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
18097,cg19908562,0.0000384,0.00000402,9.550382107,4.09E-19,gain,yes,-0.00000566,0.00000683,-0.829050731,0.407713588,neg,ns,0.002956428,0.002000739,1.477668275,0.140511818,pos,ns,0.852287147,-0.0000378,0.0000688,-0.549791636,0.582858166,neg,ns,0.036680317,Gnao1,Gnao1_Exon,8,93811377,93811426,93811425,93811426,50,-,GCGGAGCAAGGCGATTGAGAAAAACCTCAAAGAGGATGGCATCAGCGCCG,"Exon (Gnao1-202/Gnao1, exon 1 of 2)",8,93809966,93950403,140438,1,Gnao1-206,1411,Gnao1-206;Gnao1-202;Gnao1-201;Gnao1-203;Gnao1-207,Gnao1;Gnao1;Gnao1;Gnao1;Gnao1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,13,14681,ENSMUSG00000031748,conserved gene and region,8,93811274,93811435,162,*,162,16,0.648148148,0.965722802,0.098765432,1.97E-12,CpGisland,TRUE,U13,Hc-P
27538,cg10310742,0.00000508,0.00000328,1.547744228,0.122704132,gain,ns,-0.00000462,0.00000557,-0.828939265,0.407776566,neg,ns,-0.003798503,0.001632181,-2.327256439,0.020595361,neg,ns,1.686230596,0.000124443,0.0000561,2.217033277,0.027346072,pos,ns,0.932412839,Gm5265,Gm5265_Intergenic_downstream,1,169385864,169385913,169385864,169385865,50,+,CGCTGACAGACAGGCACTGAAAAGTAACAACCGTTATCATCTTAAAGCAA,Distal Intergenic,1,169453528,169453869,342,2,Gm5265-201,67956,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,13,13,383613,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19064,cg11392697,-0.0000104,0.0000065,-1.5928491,0.112213141,loss,ns,0.00000915,0.000011,0.828688464,0.407918288,pos,ns,-0.005427516,0.003234943,-1.677778164,0.094398264,neg,ns,1.025035993,0.0000266,0.000111249,0.238813407,0.811408071,pos,ns,0.876788176,Ar,Ar_Exon,X,98316784,98316833,98316784,98316785,50,-,CGTGGACTTTCCGGAAATGATGGCAGAGATCATCTCTGTGCAAGTGCCCA,"Exon (Ar-201/Ar, exon 8 of 8)",20,98148769,98323215,174447,1,Ar-201,168015,Ar-201,Ar,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,11835,ENSMUSG00000046532,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15489,cg23763736,0.0000129,0.00000272,4.746361308,0.00000317,gain,ns,-0.00000383,0.00000462,-0.828490888,0.408029955,neg,ns,0.00212186,0.001353699,1.567453911,0.118028791,pos,ns,0.928012042,-0.000108626,0.0000466,-2.333357459,0.020268583,neg,ns,0.055264045,Asic2,Asic2_Intron,11,81153721,81153770,81153721,81153722,50,+,CGGCTCCTCCTCGCTGCATTTTAATTCCTGGCCACTGTGGCCGCTGCACA,"Intron (Asic2-202/Asic2, intron 1 of 9)",11,80880169,81968457,1088289,2,Asic2-202,814687,Asic2-201;Asic2-202,Asic2;Asic2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,10,11418,ENSMUSG00000020704,conserved gene and region,11,81153306,81153722,417,*,417,46,0.688249401,0.93179831,0.110311751,2.49E-37,CpGisland,TRUE,NA,NRS
23540,cg09258636,0.0000306,0.00000259,11.82014677,7.28E-27,gain,yes,0.00000364,0.00000439,0.82844016,0.408058628,pos,ns,0.005264112,0.001286979,4.090287103,0.000055,pos,ns,4.259861459,-0.0000727,0.0000443,-1.64197934,0.101608296,neg,ns,0.044185305,Sp8,Sp8_Promoter,12,118840927,118840976,118840927,118840928,50,-,CGAAATAACGTGGCCATTATGGCCTGAAATGGGCCAGGTTTGAAGCGAGC,Promoter (5-6kb),12,118846329,118852576,6248,1,Sp8-201,-5402,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,27,29,320145,ENSMUSG00000048562,conserved gene and region,12,118840863,118841021,159,*,159,10,0.503144654,0.999371465,0.062893082,0.00000467,CpGisland,TRUE,U13,Hc-P
8298,cg20352525,-0.0000143,0.000012,-1.191779027,0.234259473,loss,ns,0.0000169,0.0000204,0.828321528,0.408125689,pos,ns,0.007729297,0.005990633,1.290230433,0.197932229,pos,ns,0.703483485,-0.000423161,0.000206017,-2.054008132,0.040813239,neg,ns,0.701037476,Zeb2,Zeb2_threeUTR,2,44987303,44987352,44987303,44987304,50,+,CGAAAATACAGTGTTTTCACAAGATCGTATCAAAAGTTCCCAAATTTGGA,3' UTR,2,44983632,45117395,133764,2,Zeb2-212,130043,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,10,158,24136,ENSMUSG00000026872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7562,cg14668986,0.0000619,0.0000217,2.852991899,0.004622226,gain,ns,-0.0000305,0.0000369,-0.828302614,0.408136381,neg,ns,0.029349437,0.010797066,2.718278966,0.006931598,pos,ns,2.159166614,-0.000635305,0.00037131,-1.710981726,0.088084828,neg,ns,0.400778336,Zbtb20,Zbtb20_Intron,16,43235771,43235820,43235819,43235820,50,-,CAAATCACCCTGACAAGCTGTGCCCTGGCATGGCTGAAGGTTGATTGGCG,"Intron (Zbtb20-209/Zbtb20, intron 5 of 7)",16,42875881,43463175,587295,1,Zbtb20-209,359890,Zbtb20-209;Zbtb20-211;Zbtb20-217;Zbtb20-218;Zbtb20-204;Zbtb20-215;Zbtb20-212,Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,98,56490,ENSMUSG00000022708,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
15972,cg05847272,0.0000528,0.00000914,5.773517171,1.89E-08,gain,yes,-0.0000129,0.0000155,-0.828117413,0.408241087,neg,ns,0.020851809,0.004549745,4.583072367,0.00000665,pos,ns,5.177089236,-0.000635468,0.000156465,-4.061396523,0.0000618,neg,ns,0.169484872,Dusp14,Dusp14_Promoter,11,84073437,84073486,84073485,84073486,50,+,GATCTGGATGATGCAATGACGTCTATAGTCACCCTTCTCTCCCACAAACG,Promoter (4-5kb),11,84048980,84069261,20282,2,Dusp14-204,-4176,Dusp14-201;Dusp14-205;Dusp14-204,Dusp14;Dusp14;Dusp14,-4636;-4858;-4176,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,1,56405,ENSMUSG00000018648,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
3766,cg10481223,-0.00000637,0.00000925,-0.688781522,0.491475922,loss,ns,0.000013,0.0000157,0.827992453,0.408311743,pos,ns,0.004018967,0.004604148,0.872901436,0.383392428,pos,ns,0.416356469,-0.000385383,0.000158336,-2.433954801,0.015499365,neg,ns,0.789320255,Grin1,Grin1_Exon,2,25293906,25293955,25293954,25293955,50,+,AGACAGGTGAGACAGGTGTCTGGGGGGCGGGGCCAGTGGCCAGACAGACG,"Exon (Grin1os-201/Grin1os-201, exon 2 of 4)",2,25291181,25319095,27915,2,Grin1-203,25140,Grin1-203;Grin1-204;Grin1-207;Grin1-208;Grin1-201;Grin1-202;Grin1-206;Grin1-205;Grin1-209;Grin1-210;Lrrc26-201;Tmem210-201;Tmem210-202,Grin1;Grin1;Grin1;Grin1;Grin1;Grin1;Grin1;Grin1;Grin1;Grin1;Lrrc26;Tmem210;Tmem210,0;0;0;0;0;0;0;0;0;0;3991;5761;5705,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,7,14810,ENSMUSG00000026959,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16564,cg08776208,0.0000268,0.0000165,1.619455222,0.106366185,gain,ns,-0.0000233,0.0000281,-0.827857049,0.408388314,neg,ns,-0.004172738,0.00823423,-0.506755062,0.612686938,neg,ns,0.212761378,0.00028883,0.000283174,1.019970845,0.308537617,pos,ns,0.384583444,Rpl31-ps16,Rpl31-ps16_Intergenic_upstream,17,85463622,85463671,85463670,85463671,50,-,AAACTTTAAACTGTTGGCTTTATGAATCGCCAGCTAGCTTCAGCTGTTCG,Distal Intergenic,17,85498633,85499008,376,1,Rpl31-ps16-201,-35011,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,13,668850,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
21771,cg24937063,-0.0000114,0.0000071,-1.602841881,0.109987949,loss,ns,0.00000998,0.0000121,0.827756164,0.408445369,pos,ns,0.013268561,0.003533941,3.754607351,0.000207291,pos,ns,3.683419139,-0.00034331,0.000121532,-2.824850312,0.005036925,neg,ns,0.868790191,Nrd1,Nrd1_Exon,4,109033322,109033371,109033322,109033323,50,+,CGGATCCATTTGACACACCAGCATTTAACAAACTTTATAGAGGTTTGTGA,"Exon (Nrd1-201/Nrd1, exon 9 of 31)",4,109000655,109061777,61123,1,Nrd1-201,32667,Nrd1-201;Nrd1-202;Nrd1-203;Nrd1-205;Nrd1-212;Nrd1-209,Nrd1;Nrd1;Nrd1;Nrd1;Nrd1;Nrd1,0;0;0;0;9116;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,230598,ENSMUSG00000053510,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15376,cg07286175,-0.00000244,0.00000262,-0.932699958,0.35170076,loss,ns,-0.00000368,0.00000444,-0.827703558,0.408475122,neg,ns,-0.001263804,0.0013019,-0.970737488,0.332435809,neg,ns,0.478292202,-0.0000106,0.0000448,-0.236399018,0.813279179,neg,ns,0.946982321,Galnt16,Galnt16_Exon,12,80576512,80576561,80576512,80576513,50,-,CGAACTCCTGCCAACTTGATCCAGGAGATCATTTTAGTGGATGACTTCAG,"Exon (Galnt16-206/Galnt16, exon 5 of 16)",12,80518277,80603892,85616,1,Galnt16-206,58235,Galnt16-206;Galnt16-204;Galnt16-201,Galnt16;Galnt16;Galnt16,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,7,108760,ENSMUSG00000021130,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15774,cg05724244,-0.0000379,0.00000588,-6.441801097,4.50E-10,loss,yes,0.00000827,0.00000999,0.82764432,0.408508628,pos,ns,-0.006794517,0.002927652,-2.320807589,0.020945778,neg,ns,1.678903506,0.000245366,0.000100682,2.437050553,0.015369837,pos,ns,0.829324551,Dpf3,Dpf3_Intron,12,83337245,83337294,83337293,83337294,50,+,CTCTACTTCTAATTGGGAACAGAGATACTCCTTGGGTGACTTCCAGCACG,"Intron (Dpf3-204/Dpf3, intron 1 of 8)",12,83213745,83350895,137151,2,Dpf3-204,13601,Dpf3-204;Dpf3-207;Dpf3-203;Dpf3-201;Dpf3-206;Dpf3-205,Dpf3;Dpf3;Dpf3;Dpf3;Dpf3;Dpf3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,16,70127,ENSMUSG00000021221,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8263,cg26419518,-0.000000711,0.00000315,-0.225713766,0.821572785,loss,ns,-0.00000443,0.00000535,-0.827562237,0.408555058,neg,ns,0.000606426,0.001566983,0.387002319,0.699020027,pos,ns,0.155510382,-0.000100778,0.0000539,-1.870120047,0.062409447,neg,ns,0.925188922,Jarid2,Jarid2_Exon,13,44906265,44906314,44906265,44906266,50,-,CGGCTGATTAATGAGATGGGCGGCATGCAGCAAGTGACTGACCTCAAAAA,"Exon (Jarid2-210/Jarid2, exon 9 of 19)",13,44730774,44920108,189335,1,Jarid2-210,175491,Jarid2-210;Jarid2-201;Jarid2-209;Jarid2-208;Jarid2-216;Jarid2-211,Jarid2;Jarid2;Jarid2;Jarid2;Jarid2;Jarid2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,21,16468,ENSMUSG00000038518,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2258,cg11276202,-0.00000506,0.0000135,-0.374859571,0.708021226,loss,ns,0.000019,0.0000229,0.827557426,0.408557779,pos,ns,-0.009781135,0.006721359,-1.455231725,0.146616986,neg,ns,0.833815712,0.000307102,0.000231147,1.328601566,0.184956626,pos,ns,0.23826595,Meis1,Meis1_Intergenic_downstream,11,18874751,18874800,18874751,18874752,50,-,CGGGGGCTGAACACAGTCGCCAAGGAAACAGATGACATCCCAAACGGCAC,Distal Intergenic,11,18880668,19012002,131335,2,Meis1-203,137251,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,88,17268,ENSMUSG00000020160,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7954,cg06283414,0.0000363,0.00000383,9.471930887,7.33E-19,gain,yes,-0.00000539,0.00000651,-0.827500256,0.408590119,neg,ns,0.006330008,0.001908237,3.317201621,0.001017386,pos,ns,2.992514395,-0.0000987,0.0000656,-1.504442098,0.133485697,neg,ns,0.137703756,Pax2,Pax2_Intergenic_upstream,19,44670369,44670418,44670369,44670370,50,+,CGGGCTTGCTGCTGAGTGCTTAATGGTGCATAAGATTAAGCCGAGGCTCT,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-85627,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
445,cg09774165,-0.0000287,0.0000107,-2.694179526,0.007440658,loss,ns,0.000015,0.0000181,0.827323824,0.408689933,pos,ns,-0.00158899,0.005302025,-0.299694943,0.764610701,neg,ns,0.116559628,-0.000234325,0.000182336,-1.285127591,0.199707022,neg,ns,0.812157058,Gm17934,Gm17934_Intergenic_downstream,3,5959218,5959267,5959218,5959219,50,+,CGTTTTATGCTGTCTTCAATTAAATGTCTATAAACACAGTGATGGCTTTA,Distal Intergenic,3,6137823,6138244,422,2,Gm17934-201,178977,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,6,100416136,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23380,cg09640890,-0.00000966,0.00000246,-3.930882783,0.00010443,loss,ns,0.00000345,0.00000418,0.826938736,0.408907842,pos,ns,0.00020588,0.001223594,0.168258005,0.866490032,pos,ns,0.062236429,-0.0000113,0.0000421,-0.267877553,0.788971721,neg,ns,0.928129782,Ptprf,Ptprf_Exon,4,118211423,118211472,118211423,118211424,50,-,CGCCAGAAGTCCTCGGTGCTCTCTGCCAGAGGCCCCTGTGTAGCTATGTA,"Exon (Ptprf-201/Ptprf, exon 29 of 33)",4,118208213,118291405,83193,2,Ptprf-201,79933,Ptprf-201;Ptprf-202;Ptprf-206;Ptprf-203;Ptprf-204,Ptprf;Ptprf;Ptprf;Ptprf;Ptprf,0;0;0;0;-682,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,9,19268,ENSMUSG00000033295,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13341,cg12537546,-0.0000386,0.00000916,-4.220291391,0.0000321,loss,ns,-0.0000129,0.0000156,-0.826773867,0.409001157,neg,ns,-0.008127265,0.004556823,-1.783537423,0.075477059,neg,ns,1.122185029,0.000228485,0.000156709,1.458024009,0.145846256,pos,ns,0.678412105,0610010K14Rik,0610010K14Rik_threeUTR,11,70236869,70236918,70236917,70236918,50,+,TCCCTCACACTGTCCGTTCCTTGATGACACAGCTGATGTGATTAAGATCG,Promoter (<=1kb),11,70235206,70236904,1699,2,0610010K14Rik-210,0,0610010K14Rik-211;0610010K14Rik-210;0610010K14Rik-205;0610010K14Rik-209;0610010K14Rik-202;0610010K14Rik-204;0610010K14Rik-208;0610010K14Rik-207;0610010K14Rik-203;0610010K14Rik-213;0610010K14Rik-212;0610010K14Rik-206;0610010K14Rik-201;0610010K14Rik-214;Alox12-201;Gm21988-201;Gm21988-202;Rnasek-202;Rnasek-201;Rnasek-203,0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;Alox12;Gm21988;Gm21988;Rnasek;Rnasek;Rnasek,-673;0;0;0;0;0;0;0;0;0;0;0;0;0;18435;0;0;2862;2924;2140,TRUE,FALSE,TRUE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,9,104457,ENSMUSG00000020831,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8560,cg19362114,0.0000129,0.00000862,1.497504582,0.135279506,gain,ns,-0.0000121,0.0000146,-0.826660306,0.40906544,neg,ns,0.003047168,0.004289021,0.710457679,0.477954496,pos,ns,0.320613449,0.0000213,0.000147499,0.144475093,0.885219203,pos,ns,0.101395472,Btrc,Btrc_Exon,19,45330102,45330151,45330150,45330151,50,-,TGAAATGTTCATAAAGAATTGCTGCATCTCGTCACCTTAACTGCGGCCCG,"Exon (Gm28578-209/Gm28578-209, exon 6 of 7)",19,45363734,45507736,144003,1,Btrc-204,-33632,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,30,98,12234,ENSMUSG00000025217,conserved gene and region,19,45329908,45330151,244,*,244,14,0.471311475,1.056277056,0.057377049,8.59E-08,CpGisland,TRUE,NA,NRS
5108,cg21448923,0.00000137,0.00000462,0.296738821,0.766864633,gain,ns,-0.00000648,0.00000784,-0.826605867,0.409096258,neg,ns,0.004831293,0.002296937,2.103363421,0.036239602,pos,ns,1.440816582,-0.000230715,0.000079,-2.920762705,0.003747975,neg,ns,0.880855756,Akap8l,Akap8l_Exon,17,32333922,32333971,32333970,32333971,50,-,TTATCTGGGCCACGGGGTCAGCTTTGTCTGGAGAGCCCAGGGGCCGGGCG,"Exon (Akap8l-206/Akap8l, exon 9 of 13)",17,32321424,32350575,29152,2,Akap8l-206,16604,Akap8l-206;Akap8l-207;Akap8l-201;Akap8l-209;Akap8l-205;Akap8l-212;Akap8l-204;Akap8l-210;Akap8l-208;Akap8l-211;Akap8l-213;Akap8l-202;Akap8l-203,Akap8l;Akap8l;Akap8l;Akap8l;Akap8l;Akap8l;Akap8l;Akap8l;Akap8l;Akap8l;Akap8l;Akap8l;Akap8l,0;0;0;0;-1023;-441;0;0;-448;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,7,54194,ENSMUSG00000002625,conserved gene but different region,17,32333847,32333977,131,*,131,14,0.748091603,0.771885522,0.106870229,2.07E-11,CpGisland,TRUE,U10,Tr-S
9039,cg14403641,-0.0000617,0.0000123,-4.998033892,0.00000097,loss,yes,-0.0000173,0.000021,-0.826587466,0.409106674,neg,ns,-0.015181648,0.006140823,-2.47224973,0.013963059,neg,ns,1.855019433,0.00014485,0.000211182,0.685900526,0.493288478,pos,ns,0.629211644,Nova1,Nova1_threeUTR,12,46697020,46697069,46697020,46697021,50,+,CGCCCATTCAATCTCAGTAAGTAAATGAAATATTGATTGAAAGTGACCCT,3' UTR,12,46694517,46818929,124413,2,Nova1-201,121860,Nova1-201;Nova1-204,Nova1;Nova1,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,10,24,664883,ENSMUSG00000021047,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11743,cg01700670,0.0000208,0.00000405,5.123371036,0.000000529,gain,yes,-0.00000569,0.00000688,-0.826422718,0.409199948,neg,ns,0.007228388,0.002015772,3.58591519,0.000390103,pos,ns,3.40882115,-0.000144564,0.0000693,-2.085390946,0.037851524,neg,ns,0.054355142,Amer2,Amer2_Exon,14,60379353,60379402,60379353,60379354,50,+,CGTGACTTCACTGAAAAGCTTTGACTCTCTTACAGGCTGTGGAGATATTA,"Exon (Amer2-203/Amer2, exon 3 of 3)",14,60373259,60380655,7397,1,Amer2-203,6094,Amer2-203;Amer2-202;Amer2-201;Amer2-204,Amer2;Amer2;Amer2;Amer2,0;6066;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,72125,ENSMUSG00000021986,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
12839,cg08064482,-0.0000149,0.00000472,-3.151594337,0.001782501,loss,ns,-0.00000663,0.00000803,-0.826422174,0.409200257,neg,ns,-0.004271975,0.002351499,-1.81670303,0.070228198,neg,ns,1.153488475,0.000128513,0.0000809,1.589176935,0.113039767,pos,ns,0.938781461,Tln2,Tln2_Exon,9,67272706,67272755,67272706,67272707,50,-,CGGGTTAGTAACCGACTTAGTCATCTGGAAAAAGAAAACAAGCAAGACAC,"Exon (Tln2-202/Tln2, exon 44 of 58)",9,67217087,67559703,342617,2,Tln2-202,286948,Tln2-202;Tln2-209;Tln2-204;Tln2-207;Tln2-205;Tln2-201,Tln2;Tln2;Tln2;Tln2;Tln2;Tln2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,70549,ENSMUSG00000052698,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5490,cg09180473,0.0000505,0.00000864,5.843831579,1.29E-08,gain,yes,0.0000121,0.0000147,0.826351557,0.409240241,pos,ns,0.00904269,0.004299757,2.103070133,0.036265427,pos,ns,1.440507205,-0.000129865,0.000147868,-0.878246882,0.380489935,neg,ns,0.617675385,Pbx3,Pbx3_Intron,2,34107038,34107087,34107038,34107039,50,+,CGGGGAGATGCTGGCTCCTGCGCCTCCATTTGAGTGGATAATGATTAAAT,"Intron (C230014O12Rik-201/C230014O12Rik-201, intron 1 of 3)",2,34172873,34288852,115980,2,Pbx3-210,181765,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,82,18516,ENSMUSG00000038718,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3930,cg07793013,-0.0000711,0.0000084,-8.467562062,1.02E-15,loss,yes,-0.0000118,0.0000143,-0.826345049,0.409243926,neg,ns,0.001518956,0.004178517,0.363515543,0.716467577,pos,ns,0.144803458,-0.000158509,0.000143699,-1.103066763,0.270853738,neg,ns,0.881547658,5730522E02Rik,5730522E02Rik_Intron,11,25814723,25814772,25814771,25814772,50,+,ACTTTAAAGGCATGATATAAAATTGCTTCAACAAGATATAAGACACACCG,"Intron (5730522E02Rik-202/5730522E02Rik, intron 2 of 5)",11,25617668,26210569,592902,2,5730522E02Rik-202,395797,5730522E02Rik-202;5730522E02Rik-201,5730522E02Rik;5730522E02Rik,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,90,70626,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26339,cg11396061,0.00000366,0.00000231,1.581918816,0.11468779,gain,ns,-0.00000325,0.00000393,-0.826308065,0.409264868,neg,ns,-0.001540933,0.001152091,-1.337509717,0.182036777,neg,ns,0.739840862,0.0000154,0.0000396,0.387976354,0.69829981,pos,ns,0.058614962,Kiz,Kiz_Intron,2,146833316,146833365,146833316,146833317,50,+,CGTTTCCAAACTGAATAGTCATTGGGCTGCCAGATAATTCAGAAACTATC,"Intron (Gm14114-201/Gm14114-201, intron 1 of 1)",2,146855864,146970097,114234,1,Kiz-201,-22499,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,29,228730,ENSMUSG00000074749,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
25696,cg03163184,0.000017,0.0000155,1.090777738,0.276217784,gain,ns,-0.0000218,0.0000264,-0.826286747,0.40927694,neg,ns,-0.006600694,0.007736465,-0.853192488,0.394211306,neg,ns,0.404270924,-0.000097,0.000266056,-0.364712183,0.715574934,neg,ns,0.590056371,Lmo3,Lmo3_fiveUTR,6,138426780,138426829,138426780,138426781,50,-,CGCCAGGTCCCTAGTTAGCAGCTTCCTTCAGCTCATCCAAGAAGCTGACA,Promoter (<=1kb),6,138416415,138426816,10402,2,Lmo3-205,0,Lmo3-204;Lmo3-201;Lmo3-206;Lmo3-202;Lmo3-208;Lmo3-203;Lmo3-205,Lmo3;Lmo3;Lmo3;Lmo3;Lmo3;Lmo3;Lmo3,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,38,109593,ENSMUSG00000030226,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9721,cg18373109,0.0000145,0.00000666,2.170699498,0.030712561,gain,ns,-0.00000935,0.0000113,-0.826266277,0.409288531,neg,ns,0.0000431,0.003316891,0.012981908,0.989650577,pos,ns,0.004518118,-0.0000916,0.000114068,-0.803288251,0.422423625,neg,ns,0.779366637,Gm7205,Gm7205_Exon,5,50282201,50282250,50282201,50282202,50,+,CGTCTGTTACCTGATGGGACGACAGGTTTCATCAACCAGAAAGGCAAGTG,"Exon (Gm7205-201/Gm7205, exon 2 of 5)",5,50217247,50391361,174115,1,Gm7205-201,64954,Gm7205-201,Gm7205,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,2,637307,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17019,cg03470475,0.000196112,0.0000243,8.065617902,1.61E-14,gain,yes,-0.0000341,0.0000413,-0.826218798,0.409315417,neg,ns,0.07494201,0.012101592,6.192739592,1.88E-09,pos,ns,8.726965545,-0.001287935,0.000416173,-3.094713229,0.002149684,neg,ns,0.504489666,Igf1,Igf1_Intron,10,87876801,87876850,87876801,87876802,50,-,CGGAATGAAGAAATTTGAAGGCAAAGCTACTGAAAATGGATCTAATTTCT,"Intron (Igf1-207/Igf1, intron 3 of 4)",10,87858265,87930895,72631,1,Igf1-207,18536,Igf1-207;Igf1-202;Igf1-203;Igf1-205;Igf1-208;Igf1-201;Igf1-204;Igf1-206,Igf1;Igf1;Igf1;Igf1;Igf1;Igf1;Igf1;Igf1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,16000,ENSMUSG00000020053,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26517,cg18728528,-0.00000512,0.00000453,-1.131526588,0.258708073,loss,ns,-0.00000636,0.00000769,-0.826161636,0.409347788,neg,ns,-0.005156731,0.002254081,-2.287730891,0.022826363,neg,ns,1.641563281,0.000194623,0.0000775,2.510693227,0.012558194,pos,ns,0.931236122,Casz1,Casz1_Intron,4,148860854,148860903,148860854,148860855,50,+,CGAGCTAATCCACATGCCCTAGAGAATTCCCGAGATGCAGCTCTGCCCTG,"Intron (Casz1-201/Casz1, intron 2 of 15)",4,148804429,148945129,140701,1,Casz1-201,56425,Casz1-201;Casz1-202,Casz1;Casz1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,94,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
26621,cg12895236,0.000119093,0.0000246,4.848973628,0.00000197,gain,ns,-0.0000345,0.0000417,-0.826137308,0.409361566,neg,ns,0.024649133,0.012224001,2.016453687,0.044614646,pos,ns,1.350522545,-0.000955331,0.000420382,-2.272529032,0.02373902,neg,ns,0.271698497,Pex14,Pex14_Intron,4,149037954,149038003,149037954,149037955,50,+,CGGAGCTATTAAATTAAGACTGTTATGAAATCAATGCTAAAAAAGCTTTC,"Intron (Pex14-201/Pex14, intron 3 of 8)",4,148960535,149099876,139342,2,Pex14-201,61873,Pex14-201;Pex14-202;Pex14-205;Pex14-203;Pex14-204,Pex14;Pex14;Pex14;Pex14;Pex14,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,41,48,56273,ENSMUSG00000028975,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25090,cg16658949,-0.0000155,0.00000604,-2.561724809,0.010888093,loss,ns,-0.00000847,0.0000103,-0.826033573,0.409420317,neg,ns,0.000136637,0.00300536,0.045464413,0.963766413,pos,ns,0.016028213,-0.000179124,0.000103354,-1.733113837,0.084069841,neg,ns,0.890633745,Auts2,Auts2_Intergenic_upstream,5,132859017,132859066,132859065,132859066,50,+,GAACTCTGTTGCCTAGCAACCAATGGAACATTACAACACTAGATAAATCG,Distal Intergenic,5,131437333,132543344,1106012,2,Auts2-207,-315673,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,319974,ENSMUSG00000029673,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18848,cg15182157,-0.00011848,0.0000101,-11.72385238,1.60E-26,loss,yes,-0.0000142,0.0000172,-0.825993769,0.409442862,neg,ns,0.014151067,0.005029789,2.81345154,0.00521431,pos,ns,2.282803183,-0.000632716,0.000172974,-3.657865524,0.000298745,neg,ns,0.583302723,Mllt6,Mllt6_threeUTR,11,97685391,97685440,97685391,97685392,50,+,CGAAGGGCAGTTCGTAAACAGCACTTGTTCTTTTAATAAAAGAATGTTTT,3' UTR,11,97663414,97685463,22050,1,Mllt6-201,21977,Cisd3-202;Cisd3-203;Cisd3-201;Cisd3-204;Mllt6-201;Mllt6-206;Mllt6-202;Pcgf2-207;Pcgf2-206;Pcgf2-203;Pcgf2-202;Pcgf2-201,Cisd3;Cisd3;Cisd3;Cisd3;Mllt6;Mllt6;Mllt6;Pcgf2;Pcgf2;Pcgf2;Pcgf2;Pcgf2,-386;-403;-513;-537;0;0;0;13944;14208;6967;14201;15057,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,4,246198,ENSMUSG00000038437,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12605,cg16425858,-0.00000145,0.00000358,-0.40371182,0.686702983,loss,ns,-0.00000502,0.00000608,-0.825764167,0.409572921,neg,ns,-0.001977547,0.001781731,-1.109902366,0.267901309,neg,ns,0.572025165,0.0000781,0.0000613,1.274738214,0.203356544,pos,ns,0.854349362,Zfp609,Zfp609_Exon,9,65795257,65795306,65795305,65795306,50,-,GGTCAATGATGAGATTCCCTACTCCAATGTCCCATTCATCCCCACTGTCG,"Exon (Zfp609-201/Zfp609, exon 2 of 10)",9,65692391,65827564,135174,2,Zfp609-201,32258,Zfp609-201;Zfp609-203,Zfp609;Zfp609,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,10,214812,ENSMUSG00000040524,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1371,cg00856080,-0.0000161,0.00000432,-3.732782189,0.000225258,loss,ns,-0.00000606,0.00000734,-0.825633091,0.40964718,neg,ns,-0.001929956,0.002150963,-0.897251984,0.370280752,neg,ns,0.431468863,-0.0000999,0.000074,-1.350855989,0.177726732,neg,ns,0.953205055,Cadps,Cadps_threeUTR,14,12449828,12449877,12449828,12449829,50,-,CGACTGGTTTTTTGCAGCTTAACTTCAAATGCAATCCTGGTTCTATTAAA,3' UTR,14,12372563,12823053,450491,2,Cadps-210,373176,Cadps-210;Cadps-202;Cadps-203;Cadps-204;Cadps-201;Cadps-208;Cadps-206,Cadps;Cadps;Cadps;Cadps;Cadps;Cadps;Cadps,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,8,34,27062,ENSMUSG00000054423,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9947,cg09865624,0.0000601,0.0000153,3.917661658,0.000110037,gain,ns,-0.0000215,0.0000261,-0.825604949,0.409663125,neg,ns,0.016884027,0.007637277,2.210739034,0.027783749,pos,ns,1.556209153,-0.000519255,0.000262645,-1.977018224,0.048925354,neg,ns,0.330614636,Skap2,Skap2_Intron,6,51708796,51708845,51708796,51708797,50,+,CGCTGCCCAAATCAATGGGGCTCCATGAATATTTTGACACAGTTTAAATG,"Intron (Gm38811-201/Gm38811-201, intron 1 of 1)",6,51859104,51871929,12826,2,Skap2-207,163084,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,19,54353,ENSMUSG00000059182,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19121,cg07598481,-0.0000264,0.0000107,-2.479073825,0.01370394,loss,ns,0.000015,0.0000181,0.82551325,0.409715082,pos,ns,-0.002969826,0.005306677,-0.559639515,0.576129473,neg,ns,0.239479907,-0.000133102,0.000182496,-0.729343977,0.46634197,neg,ns,0.651051447,Gm49017,Gm49017_Intergenic_upstream,14,98533707,98533756,98533755,98533756,50,-,GGAAATGACATTAGGACTTTAAGTGAAACAGCAGACCTGGCTCCCCCACG,Distal Intergenic,14,98519416,98519700,285,2,Gm49017-201,-14056,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,11,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7568,cg25320313,-0.00000746,0.00000586,-1.273482547,0.203800912,loss,ns,-0.00000821,0.00000995,-0.825491693,0.409727297,neg,ns,-0.004961315,0.002915103,-1.701934571,0.08977019,neg,ns,1.046867857,0.0000921,0.00010025,0.918331438,0.359159318,pos,ns,0.826340913,Zbtb20,Zbtb20_Intron,16,43276972,43277021,43276972,43276973,50,+,CGCTGGTCCTCTGGAGGCCTGTCTTAATTCACTGGCCTGTTCCCTGGCAT,"Intron (Zbtb20-209/Zbtb20, intron 5 of 7)",16,42875881,43463175,587295,1,Zbtb20-209,401091,Zbtb20-209;Zbtb20-211;Zbtb20-217;Zbtb20-218;Zbtb20-204;Zbtb20-215;Zbtb20-212;Zbtb20-201;Zbtb20-203,Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,98,56490,ENSMUSG00000022708,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15578,cg23439597,-0.0000116,0.00000434,-2.66238236,0.008163811,loss,ns,-0.00000609,0.00000737,-0.825442928,0.409754929,neg,ns,-0.00642611,0.002160197,-2.974779773,0.00316238,neg,ns,2.499985929,0.000088,0.0000743,1.184719408,0.237035877,pos,ns,0.918505747,Gm50297,Gm50297_Intergenic_downstream,18,81897999,81898048,81897999,81898000,50,-,CGGCTATTTTATTTAATCTCATATCAGAGGAATTACTGGCTGGTAATCCA,Distal Intergenic,18,82261062,82261262,201,2,Gm50297-201,363263,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,17,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U14,Hc-H
26867,cg19046398,-0.00000865,0.00000158,-5.458309571,9.86E-08,loss,yes,0.00000222,0.00000269,0.825279357,0.409847624,pos,ns,0.001529427,0.0007883,1.940159742,0.053266907,pos,ns,1.27354252,-0.0000356,0.0000271,-1.31299979,0.19015412,neg,ns,0.062430059,Nol4l,Nol4l_Exon,2,153529491,153529540,153529491,153529492,50,-,CGGCCGCTGCCCAGGCGGAAGCCCTTGGAGCGCACCCAGAACTGGAACTT,Promoter (<=1kb),2,153407462,153529971,122510,2,Nol4l-201,431,Nol4l-201,Nol4l,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,14,329540,ENSMUSG00000061411,conserved gene and region,2,153528543,153530628,2086,*,2086,233,0.761744966,0.771121688,0.111697028,6.66E-188,CpGisland,TRUE,NA,NRS
22485,cg12861286,0.0000383,0.00000677,5.655244151,3.54E-08,gain,yes,0.00000949,0.0000115,0.825228812,0.40987627,pos,ns,0.012638318,0.00336813,3.752325065,0.000209105,pos,ns,3.679636278,-0.000282939,0.00011583,-2.442714554,0.015135329,neg,ns,0.14907678,Gm12830,Gm12830_Promoter,4,114821933,114821982,114821933,114821934,50,-,CGGTGAGATATGTAATGCTTTATTAAGCGGTCTCAGCTACAACGGCGTGC,Promoter (<=1kb),4,114821722,114856166,34445,1,Gm12830-201,211,Gm12830-201,Gm12830,0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,6,26,433746,ENSMUSG00000055198,mapped to different genes,4,114821908,114822167,260,*,260,26,0.676923077,0.936936937,0.1,4.14E-20,CpGisland,TRUE,U3,Pr-B
14599,cg20000370,-0.00000632,0.00000241,-2.620431289,0.009214414,loss,ns,0.00000338,0.0000041,0.825217118,0.409882898,pos,ns,-0.002154355,0.001201168,-1.793550055,0.073859566,neg,ns,1.131593247,0.00000935,0.0000413,0.226378588,0.821056172,pos,ns,0.936120967,Fntb,Fntb_Exon,12,76803063,76803112,76803111,76803112,50,-,CCTACCTCATCCACGTCACTGACCCACTTCATGATGTGCTGGTAAGAGCG,"Exon (Rab15-201/Rab15, exon 4 of 7)",12,76765589,76920659,155071,1,Fntb-203,37474,Fntb-203;Fntb-206;Rab15-201;Rab15-207;Rab15-204;Rab15-203;Rab15-202;Rab15-208;Rab15-206;Rab15-205,Fntb;Fntb;Rab15;Rab15;Rab15;Rab15;Rab15;Rab15;Rab15;Rab15,0;0;0;-2229;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,110606,ENSMUSG00000033373,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12661,cg04098618,0.000000157,0.00000112,0.139891058,0.888836911,gain,ns,0.00000157,0.0000019,0.825053557,0.409975605,pos,ns,0.002310091,0.000557229,4.145672637,0.0000438,pos,ns,4.358772676,-0.0000592,0.0000192,-3.090750112,0.002177701,neg,ns,0.968569232,Herc1,Herc1_Exon,9,66450672,66450721,66450720,66450721,50,+,TCTTCCTGTGTCATTCTGATCTTTATTAAAGCTTCCCAACTTTTTGGTCG,"Exon (Herc1-201/Herc1, exon 38 of 78)",9,66350526,66508775,158250,1,Herc1-201,100146,Herc1-201;Herc1-206;Herc1-204,Herc1;Herc1;Herc1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,15,15,235439,ENSMUSG00000038664,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26478,cg09022749,0.00000148,0.00000444,0.333133668,0.739258577,gain,ns,0.00000622,0.00000754,0.825033285,0.409987096,pos,ns,0.005476287,0.002209589,2.478418314,0.013728644,pos,ns,1.862372362,-0.000151218,0.000076,-1.99003522,0.04746517,neg,ns,0.086043008,Casz1,Casz1_Intergenic_upstream,4,148746069,148746118,148746069,148746070,50,-,CGATTATTCGACCTGTACTTGAACCCGACTGAAAGAGATAAAGCGGAATT,Distal Intergenic,4,148804429,148954889,150461,1,Casz1-202,-58360,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,14,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27654,cg13331682,0.00000409,0.000011,0.370090674,0.711567649,gain,ns,0.0000155,0.0000188,0.824995848,0.410008317,pos,ns,0.009379352,0.005496595,1.706393139,0.088936387,pos,ns,1.050920518,-0.000304286,0.000189027,-1.609747369,0.108470811,neg,ns,0.897155066,Rgs7,Rgs7_Exon,1,175078190,175078239,175078238,175078239,50,-,TTTTTCTTTGCCTGTAGAAGCTCCTGATAGGCACTGGATCTTATAAAACG,"Exon (Rgs7-206/Rgs7, exon 16 of 18)",1,175059087,175492500,433414,2,Rgs7-206,414261,Rgs7-206;Rgs7-207;Rgs7-203;Rgs7-205;Rgs7-208;Rgs7-201;Rgs7-202;Rgs7-204,Rgs7;Rgs7;Rgs7;Rgs7;Rgs7;Rgs7;Rgs7;Rgs7,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,24012,ENSMUSG00000026527,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3211,cg09455096,-0.00000283,0.00000164,-1.725637823,0.085409082,loss,ns,0.0000023,0.00000278,0.824959187,0.410029099,pos,ns,0.000407492,0.000815226,0.499851199,0.617534462,pos,ns,0.209338801,0.0000217,0.000028,0.772241204,0.440559906,pos,ns,0.044807725,Xpo1,Xpo1_Promoter,11,23255953,23256002,23255953,23255954,50,-,CGCCATGGGCTGAAAACTCAACCGAGATGGAATCTCCCAGTCTGAACCGG,Promoter (<=1kb),11,23256041,23297597,41557,1,Xpo1-204,-88,Xpo1-201;Xpo1-204;Xpo1-203;Xpo1-206;Xpo1-202;Xpo1-205,Xpo1;Xpo1;Xpo1;Xpo1;Xpo1;Xpo1,0;0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,7,14,103573,ENSMUSG00000020290,conserved gene but different region,11,23255743,23256076,334,*,334,31,0.676646707,0.821746032,0.092814371,7.76E-23,CpGisland,TRUE,U2,Pr-W
3720,cg00830351,-0.000000539,0.000000783,-0.689241759,0.4911867,loss,ns,0.0000011,0.00000133,0.824911829,0.410055946,pos,ns,-0.0000321,0.00038946,-0.082497013,0.934304735,neg,ns,0.02951145,0.0000159,0.0000134,1.190842938,0.23462628,pos,ns,0.021854947,Herpud2,Herpud2_Exon,9,25150850,25150899,25150850,25150851,50,+,CGTTTTTAGTTTCCCCACGGTCCAGTTCAAGAAGCAGCTAATAGTCTGGT,Promoter (<=1kb),9,25108132,25151820,43689,2,Herpud2-201,921,Herpud2-201;Herpud2-202,Herpud2;Herpud2,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,80517,ENSMUSG00000008429,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
18452,cg19773399,-0.00000692,0.00000172,-4.030537367,0.0000701,loss,ns,-0.00000241,0.00000292,-0.824881738,0.410073005,neg,ns,-0.001712558,0.000854617,-2.003889117,0.045951726,neg,ns,1.337698176,0.00000736,0.0000294,0.250544007,0.802332646,pos,ns,0.966474014,Cnot1,Cnot1_threeUTR,8,95772067,95772116,95772115,95772116,50,+,GGACCTCTATTGCTATATCTTGGAAGCCACCTTCTTGATTTCCACTGACG,3' UTR,8,95719451,95807462,88012,2,Cnot1-202,35346,Cnot1-202;Cnot1-201;Cnot1-203;Cnot1-216;Cnot1-217;Cnot1-207;Cnot1-209,Cnot1;Cnot1;Cnot1;Cnot1;Cnot1;Cnot1;Cnot1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,8,24,234594,ENSMUSG00000036550,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15188,cg11383875,0.00000729,0.00000165,4.419422831,0.0000137,gain,ns,-0.00000231,0.0000028,-0.824849275,0.41009141,neg,ns,-0.001881284,0.000821185,-2.290937903,0.022637788,neg,ns,1.645166012,0.0000433,0.0000282,1.531525218,0.12665946,pos,ns,0.952454436,Ddx17,Ddx17_threeUTR,15,79533097,79533146,79533097,79533098,50,-,CGGGGAGCATGCATCAAGGGTCCGTGGCAGTGAGAAGTCCCCACACACGC,3' UTR,15,79527736,79546741,19006,2,Ddx17-201,13595,Ddx17-201;Ddx17-203;Ddx17-204;Ddx17-202,Ddx17;Ddx17;Ddx17;Ddx17,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,9,14,67040,ENSMUSG00000055065,conserved gene and region,15,79532980,79533149,170,*,170,13,0.594117647,0.886126704,0.076470588,9.43E-09,CpGisland,TRUE,U10,Tr-S
24608,cg00975442,-0.00000567,0.00000576,-0.984007999,0.325878938,loss,ns,0.00000807,0.00000978,0.824805306,0.410116338,pos,ns,0.003883674,0.002865614,1.355267595,0.176318969,pos,ns,0.753700962,-0.000165672,0.0000985,-1.681124577,0.09374589,neg,ns,0.886446623,Dlgap3,Dlgap3_Exon,4,127194634,127194683,127194634,127194635,50,-,CGAGGCAGCCATCCCCGCCCAGCCCGCTTTGCTGACCAACAGCATATGGA,"Exon (Dlgap3-201/Dlgap3, exon 3 of 12)",4,127169204,127237022,67819,1,Dlgap3-201,25430,Dlgap3-201;Dlgap3-203;Dlgap3-202,Dlgap3;Dlgap3;Dlgap3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,7,242667,ENSMUSG00000042388,conserved gene and region,4,127194630,127194762,133,*,133,9,0.69924812,0.572727273,0.067669173,0.00000959,CpGisland,TRUE,U15,NS
822,cg18461859,-0.0000242,0.00000527,-4.592389929,0.00000638,loss,ns,0.00000738,0.00000895,0.824588742,0.410239131,pos,ns,0.000413238,0.002620594,0.157688512,0.874804915,pos,ns,0.058088786,0.0000548,0.0000901,0.607918219,0.543686812,pos,ns,0.92269455,1810013L24Rik,1810013L24Rik_Exon,16,8843203,8843252,8843251,8843252,50,-,GACTGATTTGCAACCCTTCCGGGAAGCCATAGCTCTGCATGGTAAAGCCG,"Exon (1810013L24Rik-201/1810013L24Rik, exon 3 of 4)",16,8830100,8858922,28823,1,1810013L24Rik-201,13103,1810013L24Rik-201;1810013L24Rik-202,1810013L24Rik;1810013L24Rik,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,18,19,69053,ENSMUSG00000022507,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21900,cg07661910,0.0000342,0.0000115,2.968311689,0.00322779,gain,ns,0.0000161,0.0000196,0.824525984,0.410274719,pos,ns,0.009657976,0.005732642,1.684733949,0.093046332,pos,ns,1.031300743,-0.0000896,0.000197145,-0.454375894,0.649876283,neg,ns,0.249010367,Bdnf,Bdnf_fiveUTR,2,109675216,109675265,109675216,109675217,50,-,CGATCCACTGAGCAAAGCCGAACTTCTCACATGATGACTTCAAACAAGAC,Promoter (<=1kb),2,109674700,109727007,52308,1,Bdnf-201,516,Bdnf-201;Bdnf-207;Bdnf-208;Bdnf-210;Bdnf-206,Bdnf;Bdnf;Bdnf;Bdnf;Bdnf,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,8,18,12064,ENSMUSG00000048482,conserved gene and region,2,109674953,109675235,283,*,283,14,0.462897527,0.943333333,0.049469965,0.000000519,CpGisland,TRUE,U13,Hc-P
27338,cg13329537,0.000039,0.0000161,2.419250465,0.016127872,gain,ns,0.0000226,0.0000274,0.824521295,0.410277379,pos,ns,0.009568509,0.008021922,1.192795053,0.233861804,pos,ns,0.631040705,-0.000664043,0.000275873,-2.407057989,0.016665977,neg,ns,0.374300712,1700025C18Rik,1700025C18Rik_Intron,2,165089637,165089686,165089685,165089686,50,-,GTCTAACTGGATTTCTCTCTGCAGATGGCTGGGAGCCATGGGCTGGAACG,"Intron (1700025C18Rik-201/1700025C18Rik, intron 2 of 2)",2,165078693,165090750,12058,2,1700025C18Rik-201,1064,1700025C18Rik-201,1700025C18Rik,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,72211,ENSMUSG00000078935,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12113,cg06790275,-0.000000287,0.0000021,-0.136650769,0.891395547,loss,ns,0.00000294,0.00000357,0.824438095,0.410324562,pos,ns,0.002361742,0.001046387,2.257044808,0.02470117,pos,ns,1.607282481,-0.000022,0.000036,-0.611529927,0.541297004,neg,ns,0.076691016,Pias1,Pias1_Exon,9,62980818,62980867,62980866,62980867,50,-,TATTAGAAGTGAATTCGAGCTGCGCTTTACCTTTAGTTCCGCACTGTCCG,Promoter (<=1kb),9,62878368,62980879,102512,2,Pias1-201,12,Pias1-201;Pias1-202;Pias1-205,Pias1;Pias1;Pias1,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,12,56469,ENSMUSG00000032405,conserved gene and region,9,62980517,62981139,623,*,623,66,0.706260032,0.90840403,0.105939005,4.79E-52,CpGisland,TRUE,NA,NRS
21260,cg00765833,0.0000996,0.0000163,6.122432958,2.78E-09,gain,yes,-0.0000228,0.0000276,-0.824347191,0.410376118,neg,ns,0.034610718,0.008093044,4.27660054,0.0000253,pos,ns,4.596828579,-0.000840487,0.000278319,-3.019867495,0.002739109,neg,ns,0.485859603,Ssbp3,Ssbp3_Intron,4,107016180,107016229,107016180,107016181,50,-,CGTAACTCTCACTGATGAAATGGAAAGTTGAACATAAATCAATGTCTGCC,"Intron (Ssbp3-216/Ssbp3, intron 5 of 8)",4,106910701,107031069,120369,1,Ssbp3-216,105479,Ssbp3-216;Ssbp3-201;Ssbp3-215;Ssbp3-202;Ssbp3-203;Ssbp3-213;Ssbp3-214;Ssbp3-211;Ssbp3-212;Ssbp3-204;Ssbp3-206,Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,18,72475,ENSMUSG00000061887,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24128,cg20761338.2,-0.00000148,0.00000152,-0.97623936,0.329707049,loss,ns,-0.00000213,0.00000258,-0.8243218,0.41039052,neg,ns,0.000463377,0.000756168,0.612797024,0.540459838,pos,ns,0.267236573,-0.0000395,0.000026,-1.518442417,0.129922063,neg,ns,0.968279644,Anapc5,Anapc5_Exon,5,122802849,122802898,122802849,122802850,50,+,CGTTGGACTCCTGGGCAATCCTAATTGCCTCCTGCAGGGCGAGCTCTGCC,"Exon (Anapc5-201/Anapc5, exon 8 of 17)",5,122787459,122821339,33881,2,Anapc5-201,18441,Anapc5-201;Anapc5-202;Anapc5-203;Anapc5-208;Anapc5-205;Anapc5-212;Anapc5-218;Anapc5-209;Anapc5-204;Anapc5-215;Anapc5-217;Anapc5-216;Anapc5-207;Anapc5-214;Anapc5-213,Anapc5;Anapc5;Anapc5;Anapc5;Anapc5;Anapc5;Anapc5;Anapc5;Anapc5;Anapc5;Anapc5;Anapc5;Anapc5;Anapc5;Anapc5,0;0;0;0;0;0;0;-3119;0;0;0;0;0;18120;18372,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,6,59008,ENSMUSG00000029472,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20980,cg12781886,0.0000251,0.0000057,4.405093468,0.0000146,gain,ns,-0.00000798,0.00000968,-0.824303986,0.410400623,neg,ns,0.002583987,0.002835494,0.911300519,0.362845131,pos,ns,0.440278701,-0.0000539,0.0000975,-0.552487816,0.581012307,neg,ns,0.065426904,Spry2,Spry2_Promoter,14,105897354,105897403,105897402,105897403,50,-,GTTGTTGTCCCAGAGGATATATCGCATCCGGTCCCAGCTCATTGGCTCCG,Promoter (<=1kb),14,105891947,105896819,4873,2,Spry2-201,-584,Spry2-201,Spry2,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,8,12,24064,ENSMUSG00000022114,conserved gene and region,14,105896882,105897547,666,*,666,86,0.741741742,0.95483871,0.129129129,5.47E-76,CpGisland,TRUE,U1,Pr-A
5349,cg00788877,0.00000152,0.00000765,0.199046559,0.842356811,gain,ns,0.0000107,0.000013,0.824223956,0.410446017,pos,ns,-0.001191079,0.003805861,-0.312959175,0.754522119,neg,ns,0.122328024,0.0000916,0.000130883,0.699938895,0.484490382,pos,ns,0.802227138,Fam53a,Fam53a_Intergenic_downstream,5,33564239,33564288,33564287,33564288,50,-,ACAGGACATTTTAATTCCCCGACACCTTTTAGTGATTGCTTCAATTTCCG,Distal Intergenic,5,33600356,33628912,28557,2,Fam53a-203,64673,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,13,13,74504,ENSMUSG00000037339,conserved gene and region,5,33564258,33564437,180,*,180,11,0.494444444,1.001011122,0.061111111,0.0000017,CpGisland,TRUE,NA,NRS
3838,cg26059055,-0.0000018,0.0000021,-0.858451145,0.391306654,loss,ns,0.00000294,0.00000357,0.823815941,0.410677494,pos,ns,0.001026889,0.001044769,0.98288596,0.326430037,pos,ns,0.486209885,-0.0000537,0.0000359,-1.494102958,0.136165862,neg,ns,0.951825919,Fgfr1,Fgfr1_threeUTR,8,25563444,25563493,25563492,25563493,50,-,AGTATGTGTGTAAGGTTTCCAATTATATTGGTGAAGCTAACCAGTCTGCG,3' UTR,8,25518759,25575718,56960,1,Fgfr1-201,44685,Fgfr1-201;Fgfr1-214;Fgfr1-215;Fgfr1-203;Fgfr1-202;Fgfr1-213;Fgfr1-208;Fgfr1-209;Fgfr1-206;Fgfr1-216;Fgfr1-204;Fgfr1-219,Fgfr1;Fgfr1;Fgfr1;Fgfr1;Fgfr1;Fgfr1;Fgfr1;Fgfr1;Fgfr1;Fgfr1;Fgfr1;Fgfr1,0;0;0;0;0;0;0;0;0;-2507;-3357;-3373,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,7,8,14182,ENSMUSG00000031565,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9345,cg08121938,0.0000268,0.000005,5.357796502,0.000000165,gain,yes,-0.00000699,0.00000849,-0.82374435,0.410718117,neg,ns,0.005854192,0.002487497,2.353446957,0.019224475,pos,ns,1.716145505,-0.000168374,0.0000855,-1.968251524,0.049929965,neg,ns,0.071008042,Id4,Id4_Exon,13,48261769,48261818,48261817,48261818,50,-,TGGAGATCCTGCAGCACGTTATCGACTACATCCTGGACCTGCAGCTGGCG,Promoter (<=1kb),13,48261228,48266026,4799,1,Id4-201,541,Id4-201,Id4,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,9,15904,ENSMUSG00000021379,conserved gene and region,13,48261348,48262602,1255,*,1255,121,0.674103586,0.848693329,0.096414343,1.80E-89,CpGisland,TRUE,U3,Pr-B
16925,cg01381410,0.0000491,0.00000767,6.403120144,5.63E-10,gain,yes,-0.0000107,0.000013,-0.823650932,0.410771129,neg,ns,0.01317299,0.003816465,3.45162062,0.000634588,pos,ns,3.197508092,-0.000388146,0.000131248,-2.957348182,0.003341497,neg,ns,0.115389414,Gm9540,Gm9540_Intergenic_downstream,9,87443985,87444034,87443985,87443986,50,+,CGGGGATAATGAAATTTCCACTGGTGTACTGTTACGTCCAGGGGCCAAGG,Distal Intergenic,9,87394250,87394727,478,1,Gm9540-201,49735,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,7,671706,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27033,cg18724695,0.0000027,0.00000306,0.881178081,0.378904114,gain,ns,-0.00000429,0.0000052,-0.823625512,0.410785555,neg,ns,-0.000185182,0.001524668,-0.121457535,0.903407338,neg,ns,0.044116386,0.0000309,0.0000524,0.590228596,0.555467397,pos,ns,0.910258416,Dlgap4,Dlgap4_fiveUTR,2,156748075,156748124,156748075,156748076,50,-,CGATCGATGTGATGGCACCCTCCTCAGAGTAGGGAAAGCCAGTCATCTCC,5' UTR,2,156613705,156764361,150657,1,Dlgap4-205,134370,Dlgap4-205;Dlgap4-212;Dlgap4-206;Dlgap4-202;Dlgap4-210;Dlgap4-209;Dlgap4-204;Dlgap4-208;Dlgap4-211;Dlgap4-214;Dlgap4-213;Dlgap4-201;Dlgap4-203,Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,10,17,228836,ENSMUSG00000061689,conserved gene and region,2,156747941,156748091,151,*,151,11,0.529801325,1.040726817,0.072847682,0.000000299,CpGisland,TRUE,NA,NRS
16217,cg02379880,-0.000000885,0.0000274,-0.032296844,0.97425611,loss,ns,0.0000384,0.0000466,0.823612047,0.410793196,pos,ns,0.017485287,0.013642022,1.281722504,0.200897808,pos,ns,0.697024801,-0.000599044,0.000469148,-1.276875626,0.202601767,neg,ns,0.320456309,Cacna1a,Cacna1a_Intron,8,84600954,84601003,84600954,84600955,50,+,CGTCTCAGTGCATTTGGTTGTTGGGAGAAACAAAAACCATCTCGATTTTT,"Intron (Cacna1a-213/Cacna1a, intron 33 of 48)",8,84338639,84640246,301608,1,Cacna1a-213,262315,Cacna1a-213;Cacna1a-201;Cacna1a-202;Cacna1a-211;Cacna1a-212;Cacna1a-208;Cacna1a-207;Cacna1a-209;Cacna1a-210,Cacna1a;Cacna1a;Cacna1a;Cacna1a;Cacna1a;Cacna1a;Cacna1a;Cacna1a;Cacna1a,0;0;0;0;0;-428;-441;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,12,12286,ENSMUSG00000034656,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26973,cg07572694,0.0000662,0.0000158,4.19068811,0.0000363,gain,ns,-0.0000221,0.0000268,-0.823568286,0.410818032,neg,ns,0.024422222,0.007865726,3.104890857,0.002079249,pos,ns,2.682093503,-0.000649382,0.000270502,-2.400656134,0.016954811,neg,ns,0.479844,Trpc4ap,Trpc4ap_Exon,2,155637708,155637757,155637708,155637709,50,+,CGCACCAGCATGTTGGAGTCCACCAGGGAGCTGTTGATCTGCTTCAGGAA,Promoter (<=1kb),2,155634745,155637736,2992,2,Trpc4ap-210,0,Myh7b-201;Myh7b-203;Trpc4ap-201;Trpc4ap-202;Trpc4ap-210;Trpc4ap-206;Trpc4ap-209;Trpc4ap-207,Myh7b;Myh7b;Trpc4ap;Trpc4ap;Trpc4ap;Trpc4ap;Trpc4ap;Trpc4ap,0;4257;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,56407,ENSMUSG00000038324,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23501,cg21247898,-0.0000514,0.00000896,-5.735662166,2.31E-08,loss,yes,0.0000125,0.0000152,0.82348266,0.41086663,pos,ns,-0.007154137,0.004460629,-1.603840441,0.109767528,neg,ns,0.959526115,0.000188492,0.000153401,1.22875836,0.220094376,pos,ns,0.92800893,Gm18441,Gm18441_Intergenic_downstream,12,118720311,118720360,118720311,118720312,50,-,CGCCAATTAAGCAATCATGAATACCAAGTACTGAAGCTGATGAAAATAGG,Distal Intergenic,12,118732439,118733055,617,2,Gm18441-201,12744,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,9,100417195,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12978,cg26640686,-0.00000157,0.000000623,-2.512424772,0.012497987,loss,ns,0.000000872,0.00000106,0.823413295,0.410906001,pos,ns,0.0000498,0.000310252,0.160469633,0.872615657,pos,ns,0.059176999,-0.0000137,0.0000107,-1.285810076,0.199468976,neg,ns,0.011774826,Smc4,Smc4_fiveUTR,3,69004947,69004996,69004995,69004996,50,-,GCATTTGTAACGAATTTCCGTTCGAGTTTGTATTTTAGGCGCCATTTTCG,Promoter (<=1kb),3,69004970,69018108,13139,1,Smc4-206,0,Ift80-202;Ift80-204;Ift80-208;Ift80-206;Ift80-207;Ift80-205;Ift80-209;Ift80-212;Smc4-201;Smc4-206;Smc4-202;Smc4-207;Smc4-211,Ift80;Ift80;Ift80;Ift80;Ift80;Ift80;Ift80;Ift80;Smc4;Smc4;Smc4;Smc4;Smc4,-404;-388;-377;-449;-470;-463;-559;-422;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,4,70099,ENSMUSG00000034349,mapped to different genes,3,69004743,69005086,344,*,344,37,0.60755814,1.165567766,0.10755814,1.12E-29,CpGisland,TRUE,U1,Pr-A
1060,cg10035074,-0.00000482,0.00000144,-3.353378899,0.00089734,loss,ns,-0.00000201,0.00000244,-0.823216278,0.411017838,neg,ns,-0.000910053,0.000715643,-1.27165832,0.204447752,neg,ns,0.689417661,-0.0000406,0.0000246,-1.649551728,0.100047532,neg,ns,0.968779444,Esrp1,Esrp1_Exon,4,11357426,11357475,11357426,11357427,50,+,CGTAGAATAGCGCCAAGACCCAAGAAAAACTTACATGGTAACTTACATGG,"Exon (Esrp1-201/Esrp1, exon 12 of 15)",4,11331933,11386679,54747,2,Esrp1-201,29204,Esrp1-201;Esrp1-204;Esrp1-203;Esrp1-206;Esrp1-202;Esrp1-207,Esrp1;Esrp1;Esrp1;Esrp1;Esrp1;Esrp1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,207920,ENSMUSG00000040728,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27335,cg24861758,-0.000000838,0.00000118,-0.707580823,0.479737214,loss,ns,0.00000166,0.00000201,0.823156401,0.411051831,pos,ns,0.001223026,0.000589628,2.074232123,0.038882868,pos,ns,1.410241704,-0.0000227,0.0000203,-1.119055832,0.263982666,neg,ns,0.969164606,Ncoa5,Ncoa5_fiveUTR,2,165023148,165023197,165023196,165023197,50,-,TCGTGTGGGGCTGGGTCTTGATGGAGCCGTATTCATATTTCTTCTTTCCG,5' UTR,2,165000357,165034867,34511,2,Ncoa5-201,11670,Ncoa5-201;Ncoa5-202;Ncoa5-203;Ncoa5-206;Ncoa5-208;Ncoa5-205;Ncoa5-207,Ncoa5;Ncoa5;Ncoa5;Ncoa5;Ncoa5;Ncoa5;Ncoa5,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,7,228869,ENSMUSG00000039804,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9819,cg25806377,-0.0000123,0.00000311,-3.953203042,0.0000956,loss,ns,0.00000435,0.00000529,0.823109348,0.411078545,pos,ns,0.004794124,0.001549269,3.094442914,0.002151584,pos,ns,2.667241624,-0.000235022,0.0000533,-4.411145636,0.0000142,neg,ns,0.078609862,Gm48777,Gm48777_Intergenic_upstream,12,50943697,50943746,50943745,50943746,50,+,TAAATGTACAAACAGTTATACCAGTTTTATACACAAAACCACAGGTACCG,Distal Intergenic,12,50895099,50895471,373,2,Gm48777-201,-48226,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,10,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9860,cg10742112,-0.0000069,0.00000452,-1.525691862,0.128106183,loss,ns,0.00000632,0.00000768,0.823041069,0.411117311,pos,ns,0.004242982,0.002251182,1.884779424,0.060394914,pos,ns,1.21899963,-0.000194945,0.0000774,-2.518078268,0.012303194,neg,ns,0.908484764,Gm49908,Gm49908_Intergenic_upstream,17,51257761,51257810,51257809,51257810,50,-,CTCTTTATGTTTACTGTTTATTGCAGATACCAGATCGTAATTAAAATGCG,Distal Intergenic,17,51236771,51237062,292,2,Gm49908-201,-20748,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,9,9,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14447,cg07186014,-0.00000238,0.000000697,-3.407037096,0.000743374,loss,ns,-0.000000975,0.00000118,-0.822918279,0.411187033,neg,ns,-0.000138065,0.000347008,-0.397873927,0.690996969,neg,ns,0.160523858,-0.0000152,0.0000119,-1.271832651,0.204385872,neg,ns,0.01641211,Ywhae,Ywhae_fiveUTR,11,75732846,75732895,75732894,75732895,50,-,CCCGCGCCAGTTGCCAGGGAGCGGTTGCCATAGAGCTGAGCAGTTGTCCG,Promoter (<=1kb),11,75732869,75765845,32977,1,Ywhae-201,0,Ywhae-201;Ywhae-203;Ywhae-204;Ywhae-202,Ywhae;Ywhae;Ywhae;Ywhae,0;0;0;-253,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,9,9,22627,ENSMUSG00000020849,conserved gene but different region,11,75732561,75733672,1112,*,1112,119,0.701438849,0.881745794,0.107014389,6.96E-94,CpGisland,TRUE,NA,NRS
16091,cg01548368,0.000000302,0.0000015,0.201670663,0.840306469,gain,ns,0.00000209,0.00000255,0.822880854,0.411208284,pos,ns,0.00114448,0.000745752,1.534665172,0.125886033,pos,ns,0.900022452,-0.00004,0.0000256,-1.560187064,0.119735948,neg,ns,0.960978979,Acaca,Acaca_Intron,11,84376647,84376696,84376647,84376648,50,+,CGGCAATGACCCACAACAGGGAGACATCAAGCGTGAAATTTACTAGAAAT,"Intron (Acaca-202/Acaca, intron 50 of 55)",11,84173122,84401651,228530,1,Acaca-202,203525,Acaca-202;Acaca-201,Acaca;Acaca,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,28,28,107476,ENSMUSG00000020532,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23599,cg10686833,-0.000026,0.00000572,-4.549412209,0.00000773,loss,ns,-0.000008,0.00000973,-0.82282026,0.411242694,neg,ns,-0.006677892,0.002849375,-2.343633801,0.01972844,neg,ns,1.704907245,0.0000883,0.000098,0.900874685,0.368354284,pos,ns,0.91612148,Gm3508,Gm3508_Intergenic_upstream,1,119255495,119255544,119255495,119255496,50,+,CGAGTGTCAGTGATGAACACGAAACCATTCCAAGAAATGTCTCGGGCCCT,Distal Intergenic,1,119241962,119242753,792,2,Gm3508-201,-12742,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,8,100041778,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5977,cg11570383,-0.00000353,0.00000171,-2.067281751,0.0395373,loss,ns,0.00000238,0.0000029,0.822792775,0.411258303,pos,ns,-0.000507465,0.000849081,-0.597663767,0.550500637,neg,ns,0.259242174,-0.0000228,0.0000292,-0.781523582,0.435091067,neg,ns,0.947734223,Gm50318,Gm50318_threeUTR,18,35660276,35660325,35660276,35660277,50,-,CGCCTACCATTGCACTTGGTGATGAGCTGGTCCTTCTTGCTGGACTCCTG,3' UTR,18,35647268,35662163,14896,2,Gm50318-201,1838,Gm50318-201;Spata24-201;Spata24-205;Spata24-203;Spata24-202;Spata24-204;Spata24-207;Spata24-206,Gm50318;Spata24;Spata24;Spata24;Spata24;Spata24;Spata24;Spata24,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10269,cg06993177,0.0000171,0.0000153,1.116345523,0.2651388,gain,ns,0.0000214,0.000026,0.822784473,0.411263017,pos,ns,0.01431947,0.007626899,1.877495845,0.06138897,pos,ns,1.211909652,-0.000150876,0.000262288,-0.575228498,0.56555404,neg,ns,0.227332918,Evx1,Evx1_Intergenic_downstream,6,52319302,52319351,52319302,52319303,50,+,CGTGTCCAATCAGCAGCCTTTAATTGACTGTATTTTCTGGGTAATTGAGC,Distal Intergenic,6,52313552,52316644,3093,1,Evx1-202,5750,Evx1-201;Evx1-202,Evx1;Evx1,0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,19,14028,ENSMUSG00000005503,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
17919,cg21086749,0.00000581,0.00000674,0.86123708,0.389773129,gain,ns,-0.00000942,0.0000115,-0.822545457,0.411398769,neg,ns,-0.003713892,0.00335575,-1.106724924,0.269270932,neg,ns,0.569810526,0.000091,0.000115404,0.788558821,0.430972518,pos,ns,0.818436606,Pdzrn4,Pdzrn4_Intron,15,92520986,92521035,92520986,92520987,50,-,CGCACCAGCTCCTACGTGACATTGAGATGGATGAAGCCATTTGTTGGCAT,"Intron (Pdzrn4-202/Pdzrn4, intron 3 of 9)",15,92396881,92771036,374156,1,Pdzrn4-202,124105,Pdzrn4-202;Pdzrn4-203,Pdzrn4;Pdzrn4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,7,239618,ENSMUSG00000036218,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7698,cg14918451,-0.000000814,0.00000624,-0.130304955,0.896409674,loss,ns,0.00000872,0.0000106,0.822539325,0.411402252,pos,ns,0.002896613,0.003107234,0.932215882,0.351950424,pos,ns,0.453518508,-0.000319417,0.000106858,-2.989182743,0.003021066,neg,ns,0.728785651,Klk11,Klk11_Exon,7,43776996,43777045,43776996,43776997,50,-,CGCCCCCAGATGGCTCCTGACAGCAGCCCACTGCCTCAAGCCGTGGGTGC,"Exon (Klk11-201/Klk11, exon 3 of 6)",7,43774604,43779263,4660,1,Klk11-201,2392,Klk10-201;Klk11-201;Klk11-205;Klk11-202;Klk11-203;Klk11-204;Klk12-202;Klk12-201,Klk10;Klk11;Klk11;Klk11;Klk11;Klk11;Klk12;Klk12,-3990;0;0;0;0;0;8099;7896,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,56538,ENSMUSG00000067616,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24702,cg16433344,-0.0000086,0.00000274,-3.14153825,0.001842878,loss,ns,-0.00000383,0.00000465,-0.822518935,0.411413834,neg,ns,-0.001972687,0.001362804,-1.447520763,0.148761639,neg,ns,0.827509045,0.0000252,0.0000469,0.538733397,0.590457471,pos,ns,0.938444643,Prmt8,Prmt8_Exon,6,127711201,127711250,127711201,127711202,50,+,CGGTCTGGAAACATAAGCCCTCCAGGTTTCTGTTGATGAATTGTGGGGAA,"Exon (Prmt8-201/Prmt8, exon 6 of 10)",6,127689011,127769472,80462,2,Prmt8-201,58222,Prmt8-201,Prmt8,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,381813,ENSMUSG00000030350,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16771,cg04190578,0.00000191,0.0000107,0.179210893,0.857889184,gain,ns,0.0000149,0.0000181,0.822375292,0.411495431,pos,ns,0.003273335,0.005317325,0.615598057,0.538611517,pos,ns,0.268724365,-0.000127183,0.000182862,-0.695513536,0.487254575,neg,ns,0.763311656,Esrrb,Esrrb_Exon,12,86514309,86514358,86514357,86514358,50,+,GATGAGCCTGCTGCAGAGTGCCTGGATGGAAATCCTCATCCTGGGCATCG,"Exon (Esrrb-204/Esrrb, exon 6 of 7)",12,86361117,86521628,160512,1,Esrrb-204,153192,Esrrb-204;Esrrb-202;Esrrb-203;Esrrb-201;Esrrb-206;Esrrb-205,Esrrb;Esrrb;Esrrb;Esrrb;Esrrb;Esrrb,0;0;0;0;0;9900,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,19,26380,ENSMUSG00000021255,conserved gene and region,12,86514357,86514479,123,*,123,9,0.585365854,0.854826255,0.073170732,0.00000513,CpGisland,TRUE,NA,NRS
27947,cg22373416,-0.0000243,0.00000784,-3.100995811,0.00210595,loss,ns,0.000011,0.0000133,0.82222435,0.411581186,pos,ns,0.019865732,0.003902527,5.090479381,0.000000621,pos,ns,6.207129484,-0.000577083,0.000134208,-4.299932222,0.0000229,neg,ns,0.613898798,Rps6kc1,Rps6kc1_threeUTR,1,190833999,190834048,190834047,190834048,50,-,GAATTACCTTGTCAATCACCCCAAGGACTCTGAAGGCCTTCAGCTCCTCG,Promoter (<=1kb),1,190772879,190834036,61158,2,Rps6kc1-206,0,Rps6kc1-204;Rps6kc1-206;Rps6kc1-203;Rps6kc1-201;Rps6kc1-205;Rps6kc1-208,Rps6kc1;Rps6kc1;Rps6kc1;Rps6kc1;Rps6kc1;Rps6kc1,0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,29,320119,ENSMUSG00000089872,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
2946,cg17373854,0.0000791,0.0000132,6.009634313,5.21E-09,gain,yes,-0.0000184,0.0000224,-0.82219119,0.411600026,neg,ns,0.006952648,0.006554017,1.060822274,0.289596452,pos,ns,0.538206763,-0.00000611,0.000225392,-0.027088911,0.978406249,neg,ns,0.504825383,Gm11880,Gm11880_Intergenic_upstream,4,22134086,22134135,22134086,22134087,50,+,CGCCAGGATTTAACAAGCCTAATCCCTAGGAGAGGTGATAAAAATTCATT,Distal Intergenic,4,22117134,22117532,399,2,Gm11880-201,-16554,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,11,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5299,cg23935494,0.000000643,0.00000503,0.127820977,0.898373526,gain,ns,0.00000703,0.00000855,0.82211623,0.411642618,pos,ns,0.004303297,0.0025049,1.717951479,0.086804017,pos,ns,1.061460179,-0.000183068,0.0000861,-2.12516077,0.034363852,neg,ns,0.909340571,Ranbp17,Ranbp17_Intron,11,33359278,33359327,33359326,33359327,50,+,CCCAGTATTCTTTAAACTTGATAAAGCAAATTAATCTTTGATTGCAGGCG,"Intron (Ranbp17-202/Ranbp17, intron 14 of 27)",11,33211795,33513746,301952,2,Ranbp17-202,154419,Ranbp17-202;Ranbp17-206;Ranbp17-203,Ranbp17;Ranbp17;Ranbp17,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,31,66011,ENSMUSG00000040594,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2035,cg16107202,-0.0000519,0.00000939,-5.531800071,6.75E-08,loss,yes,0.0000131,0.0000159,0.822049549,0.411680508,pos,ns,-0.002347153,0.004671682,-0.502421293,0.615727908,neg,ns,0.210611162,-0.000223122,0.000160659,-1.388796815,0.165891495,neg,ns,0.81975374,Gm38154,Gm38154_Intergenic_upstream,3,17566455,17566504,17566503,17566504,50,-,CATTTTCATGAGGAGGTCATTTCAAGCCAAATAACTGGTTATGTGAGCCG,Distal Intergenic,3,17670688,17671027,340,1,Gm38154-201,-104233,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,15,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26646,cg19675949,-0.000000447,0.00000159,-0.281297323,0.778670031,loss,ns,-0.00000222,0.0000027,-0.822024806,0.411694569,neg,ns,-0.000295823,0.000790113,-0.374406285,0.708358043,neg,ns,0.14974717,0.00000994,0.0000272,0.365700731,0.714837814,pos,ns,0.938721189,Kif1b,Kif1b_Exon,4,149225145,149225194,149225193,149225194,50,-,CCCCAGAGTAAGTCCCGTAATGAAGTAAACTGATGAGACTTCCATTTCCG,"Exon (Kif1b-203/Kif1b, exon 24 of 49)",4,149176319,149307692,131374,2,Kif1b-203,82498,Kif1b-203;Kif1b-212;Kif1b-202;Kif1b-206,Kif1b;Kif1b;Kif1b;Kif1b,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,16561,ENSMUSG00000063077,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23525,cg11422963,-0.00000307,0.00000522,-0.588101831,0.55689213,loss,ns,0.00000728,0.00000886,0.82188749,0.411772604,pos,ns,0.00308395,0.002595818,1.188045688,0.235724821,pos,ns,0.627594686,-0.000134947,0.0000893,-1.511677142,0.131634717,neg,ns,0.909435987,Gm6171,Gm6171_Intergenic_downstream,12,118787189,118787238,118787237,118787238,50,+,AAATTACCCACATGATGTATAGCTTAATGAACCCCCTTGTGTTGATCACG,Distal Intergenic,12,118793188,118793832,645,2,Gm6171-201,6594,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,620665,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24154,cg24082321,-0.00000237,0.0000014,-1.689702674,0.092090201,loss,ns,0.00000195,0.00000238,0.821688535,0.411885683,pos,ns,0.000287995,0.000697022,0.413179036,0.679761097,pos,ns,0.167643694,-0.00000862,0.000024,-0.359560475,0.719420654,neg,ns,0.056305504,Orai1,Orai1_Exon,5,123015421,123015470,123015421,123015422,50,+,CGGACTGGATCGGCCAGAGTTACTCCGAGGTGATGAGCCTCAACGAGCAC,Promoter (<=1kb),5,123015074,123030156,15083,1,Orai1-201,347,Orai1-201;Orai1-202;Orai1-203,Orai1;Orai1;Orai1,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,109305,ENSMUSG00000049686,conserved gene and region,5,123014769,123015662,894,*,894,106,0.72147651,0.911157263,0.118568233,5.37E-89,CpGisland,TRUE,U1,Pr-A
26003,cg13380048,-0.00000641,0.00000584,-1.098898073,0.272665235,loss,ns,0.00000815,0.00000991,0.821645314,0.411910251,pos,ns,-0.000675151,0.00290454,-0.232446767,0.816344413,neg,ns,0.088126575,0.0000855,0.0000999,0.855851876,0.392740741,pos,ns,0.914021093,Ammecr1,Ammecr1_Exon,X,142858871,142858920,142858919,142858920,50,-,CAACAATGACCTTGCTCCTTTGCAACCTCCGGTAGGTAGGTGGCGGTGCG,"Exon (Ammecr1-201/Ammecr1, exon 4 of 6)",20,142851146,142966728,115583,2,Ammecr1-201,107808,Ammecr1-201,Ammecr1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,8,56068,ENSMUSG00000042225,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21387,cg06061819,0.00000548,0.0000104,0.525359608,0.59970878,gain,ns,0.0000146,0.0000177,0.821595538,0.411938546,pos,ns,0.000442331,0.005190013,0.085227419,0.932135608,pos,ns,0.030520901,-0.0000758,0.000178484,-0.424791415,0.671283418,neg,ns,0.848674595,Zswim6,Zswim6_Intergenic_downstream,13,107602318,107602367,107602318,107602319,50,+,CGGGTGAAAAATTGCACTTGTAGCTAATTGCACCTGCAATTACCTACTTC,Distal Intergenic,13,107725804,107734026,8223,2,Zswim6-202,131659,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,26,67263,ENSMUSG00000032846,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7567,cg02644696,0.0000054,0.00000166,3.260747971,0.001234887,gain,ns,-0.00000231,0.00000281,-0.821479919,0.412004274,neg,ns,0.002622801,0.000824029,3.182899192,0.001606044,pos,ns,2.794242562,-0.0000284,0.0000283,-1.003354438,0.31647241,neg,ns,0.959579951,Zbtb20,Zbtb20_Intron,16,43276922,43276971,43276922,43276923,50,-,CGCACACTGTCAAGAAGAAATATGATAGTGTCTTAAAAGATTAATAATAT,"Intron (Zbtb20-209/Zbtb20, intron 5 of 7)",16,42875881,43463175,587295,1,Zbtb20-209,401041,Zbtb20-209;Zbtb20-211;Zbtb20-217;Zbtb20-218;Zbtb20-204;Zbtb20-215;Zbtb20-212;Zbtb20-201;Zbtb20-203,Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,98,56490,ENSMUSG00000022708,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3684,cg14896592,-0.0000784,0.0000116,-6.755112763,7.06E-11,loss,yes,0.0000162,0.0000197,0.821327339,0.412091023,pos,ns,-0.006891665,0.005776261,-1.193101393,0.233741998,neg,ns,0.631263248,0.000045,0.000198645,0.226353396,0.821075747,pos,ns,0.87257058,Gm47909,Gm47909_Intergenic_downstream,14,25039154,25039203,25039202,25039203,50,-,TGATTAATGTATATTGTAATCATCACAGAATACACAGCTGTCTATTAACG,Distal Intergenic,14,25089939,25090406,468,2,Gm47909-201,51252,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,13,17,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14131,cg06136832,0.00000972,0.00000253,3.837989007,0.000150352,gain,ns,-0.00000353,0.0000043,-0.82123699,0.412142396,neg,ns,0.000761508,0.001260648,0.60406095,0.546244916,pos,ns,0.262612592,0.0000192,0.0000434,0.443834861,0.657471615,pos,ns,0.066823877,Hoxd10,Hoxd10_Exon,2,74694178,74694227,74694178,74694179,50,-,CGCTGGAATTAGAAAAAGAGTTCTTGTTCAATATGTACCTCACCCGCGAG,"Exon (Gm28309-201/Gm28309-201, exon 3 of 3)",2,74691924,74695105,3182,1,Hoxd10-201,2254,Hoxd10-201;Hoxd9-201,Hoxd10;Hoxd9,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,21,24,15430,ENSMUSG00000050368,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
26234,cg26887379,-0.00000299,0.00000113,-2.634305154,0.008854259,loss,ns,-0.00000158,0.00000193,-0.821194133,0.412166766,neg,ns,-0.000533169,0.000564059,-0.94523598,0.345274563,neg,ns,0.461835415,-0.0000139,0.0000194,-0.716745575,0.474070741,neg,ns,0.031164312,Dhrs3,Dhrs3_fiveUTR,4,144892816,144892865,144892864,144892865,50,+,ATCAGATCGCGTTTAAGCAATTTCCTGAGCCCAAGAATAGCAATGAGTCG,Promoter (<=1kb),4,144892827,144927642,34816,1,Dhrs3-202,0,Dhrs3-202;Dhrs3-207;Dhrs3-206;Dhrs3-203;Dhrs3-205;Dhrs3-201,Dhrs3;Dhrs3;Dhrs3;Dhrs3;Dhrs3;Dhrs3,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,5,20148,ENSMUSG00000066026,conserved gene and region,4,144892683,144892878,196,*,196,18,0.62244898,0.954545455,0.091836735,2.31E-13,CpGisland,TRUE,U1,Pr-A
2038,cg07540432,-0.00000371,0.00000121,-3.057291085,0.002427991,loss,ns,0.00000169,0.00000206,0.821146683,0.412193749,pos,ns,0.000364936,0.000604488,0.603710793,0.546477433,pos,ns,0.262427767,-0.00000868,0.0000208,-0.417770209,0.676404348,neg,ns,0.973076872,Pcsk5,Pcsk5_Exon,19,17617652,17617701,17617700,17617701,50,-,CTTAAAACCAGCAGCATTGGTTTTCCAGTCATTAGCGTTCAAATGTCCCG,"Exon (Pcsk5-201/Pcsk5, exon 10 of 38)",19,17432319,17837632,405314,2,Pcsk5-201,219931,Pcsk5-201;Pcsk5-202;Pcsk5-204,Pcsk5;Pcsk5;Pcsk5,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,7,18552,ENSMUSG00000024713,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17381,cg21692755,0.0000189,0.00000961,1.969712026,0.049761404,gain,ns,0.0000134,0.0000163,0.821119585,0.412209158,pos,ns,0.005938844,0.004781961,1.241926502,0.215202442,pos,ns,0.667152804,-0.000197595,0.000164451,-1.201543026,0.23045776,neg,ns,0.510185323,Asb18,Asb18_Intron,1,89962349,89962398,89962397,89962398,50,-,CAGCTGGCTGCCTTCATTATTTTTACGCCAACACAGTTTAAAAATCTCCG,"Intron (Asb18-205/Asb18, intron 3 of 4)",1,89950220,89996452,46233,2,Asb18-205,34054,Asb18-205;Asb18-201;Asb18-202;Asb18-204;Asb18-203,Asb18;Asb18;Asb18;Asb18;Asb18,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,4,208372,ENSMUSG00000067081,conserved gene and region,1,89962301,89962494,194,*,194,11,0.567010309,0.734848485,0.056701031,0.00000348,CpGisland,TRUE,NA,NRS
9279,cg02585505,-0.00000506,0.00000138,-3.678583739,0.000276433,loss,ns,0.00000192,0.00000234,0.821034111,0.412257767,pos,ns,0.001239761,0.00068497,1.809948794,0.071272014,pos,ns,1.147080967,-0.0000257,0.0000236,-1.090692655,0.276255174,neg,ns,0.04794057,Zfp282,Zfp282_fiveUTR,6,47877550,47877599,47877598,47877599,50,-,GAAGGGGACTGTTTGCTCCTACGGGCTGTAGATGGAGCTGTCCGGCCCCG,Promoter (<=1kb),6,47877204,47908485,31282,1,Zfp282-201,346,Zfp282-201;Zfp282-202;Zfp398-202,Zfp282;Zfp282;Zfp398,0;0;41855,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,5,101095,ENSMUSG00000025821,conserved gene but different region,6,47877367,47877695,329,*,329,28,0.686930091,0.726040353,0.085106383,1.35E-19,CpGisland,TRUE,NA,NRS
17092,cg01695906,-0.00000408,0.0000022,-1.854867221,0.064564506,loss,ns,-0.00000307,0.00000374,-0.820930098,0.412316925,neg,ns,-0.002340692,0.001094702,-2.138199421,0.033282156,neg,ns,1.477788552,0.000028,0.0000376,0.744959084,0.45686085,pos,ns,0.930103572,Msi2,Msi2_Intron,11,88349074,88349123,88349122,88349123,50,-,TGAGAAAAACAGCTGAGGCCCAACTTCTAACACTCAACCAAGGCCATGCG,"Intron (Msi2-203/Msi2, intron 11 of 13)",11,88339382,88718229,378848,2,Msi2-203,369106,Msi2-203;Msi2-201,Msi2;Msi2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,21,36,76626,ENSMUSG00000069769,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15762,cg12449245,-0.0000152,0.00000311,-4.881803767,0.00000169,loss,yes,0.00000434,0.00000529,0.820850188,0.412362376,pos,ns,-0.000662762,0.001549363,-0.427764424,0.669119645,neg,ns,0.174496219,-0.00000158,0.0000533,-0.029586966,0.976415499,neg,ns,0.950334915,Dpf3,Dpf3_Exon,12,83216330,83216379,83216378,83216379,50,+,TCTGGGGGCTCAGCCACCGGGGGATTTAAACAGTACATGTGATAGCCTCG,"Exon (Dpf3-204/Dpf3, exon 8 of 9)",12,83213745,83350895,137151,2,Dpf3-204,134516,Dpf3-204;Dpf3-207,Dpf3;Dpf3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,16,70127,ENSMUSG00000021221,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24301,cg04117116,0.0000155,0.00000228,6.802058591,5.32E-11,gain,yes,-0.00000317,0.00000387,-0.820794894,0.412393828,neg,ns,0.002600201,0.001133236,2.29449112,0.022430446,pos,ns,1.649162094,-0.0000328,0.000039,-0.841420581,0.400760951,neg,ns,0.017759605,Pou3f1,Pou3f1_Intron,4,124575455,124575504,124575455,124575456,50,-,CGACTCGAGCCGCGAGTTTATGGATCTTGATTGCACCCAGCAGGGAATCC,"Intron (Gm2164-201/Gm2164-201, intron 1 of 1)",4,124656807,124660655,3849,1,Pou3f1-201,-81352,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,43,85,18991,ENSMUSG00000090125,mapped to different genes,4,124575150,124575468,319,*,319,28,0.648902821,0.833831217,0.087774295,5.62E-20,CpGisland,TRUE,NA,NRS
1821,cg06774254,-0.0000034,0.00000371,-0.915028219,0.360888007,loss,ns,0.00000517,0.0000063,0.820767522,0.412409399,pos,ns,0.001752287,0.001847001,0.948720439,0.343501809,pos,ns,0.464070971,-0.0000714,0.0000635,-1.124303102,0.261754284,neg,ns,0.909081199,Foxp2,Foxp2_Exon,6,15409826,15409875,15409826,15409827,50,+,CGGCCCCAGTCACCCCGATTACCCAGGGACCCTCAGTAATCACCCCAGCC,"Exon (Foxp2-207/Foxp2, exon 13 of 19)",6,14901349,15441977,540629,1,Foxp2-207,508477,Foxp2-207;Foxp2-213;Foxp2-205;Foxp2-204;Foxp2-201;Foxp2-209;Foxp2-202;Foxp2-206,Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,65,114142,ENSMUSG00000029563,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7254,cg11260859,0.0000158,0.0000366,0.432460962,0.665707101,gain,ns,-0.000051,0.0000621,-0.820519977,0.412550228,neg,ns,-0.01323068,0.018204038,-0.726799176,0.467897448,neg,ns,0.329849324,0.000391662,0.000626035,0.625622335,0.53202299,pos,ns,0.645149895,Nkx3-2,Nkx3-2_Intergenic_downstream,5,41750522,41750571,41750522,41750523,50,-,CGAGTCCATTAAGTTGTAGGGAGAAATTAGCCTTGACGGGCAGAATCAAA,Distal Intergenic,5,41761483,41764501,3019,2,Nkx3-2-201,13979,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,3,12020,ENSMUSG00000049691,mapped to different genes,5,41750397,41750559,163,*,163,10,0.423312883,1.383701189,0.061349693,0.0000058,CpGisland,TRUE,U13,Hc-P
10192,cg11864223,0.0000275,0.00000409,6.740645678,7.70E-11,gain,yes,-0.0000057,0.00000694,-0.820513818,0.412553732,neg,ns,0.000425888,0.002033463,0.209439903,0.834242413,pos,ns,0.078707734,0.0000928,0.0000699,1.32737381,0.185361765,pos,ns,0.106777494,Hoxa9,Hoxa9_Exon,6,52225622,52225671,52225670,52225671,50,-,AGGAGAACCACAAGCATAGTCAGTCAGGGACAAAGTGTGAGTGTCAAGCG,"Exon (Hoxa9-201/Hoxa9, exon 1 of 2)",6,52223100,52227370,4271,2,Hoxa9-201,1699,Hoxa7-204;Hoxa9-201;Hoxa9-203;Hoxa9-202;Hoxa9-204;Hoxa9-205,Hoxa7;Hoxa9;Hoxa9;Hoxa9;Hoxa9;Hoxa9,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,14,15405,ENSMUSG00000038227,mapped to different genes,6,52225670,52226051,382,*,382,36,0.678010471,0.824460432,0.094240838,1.10E-26,CpGisland,TRUE,NA,NRS
9760,cg15568214,0.000179892,0.0000151,11.94583555,2.59E-27,gain,yes,-0.000021,0.0000256,-0.820506998,0.412557613,neg,ns,0.026864664,0.007495022,3.584334246,0.000392378,pos,ns,3.406295826,-0.000772491,0.000257753,-2.997017332,0.002946651,neg,ns,0.132804618,Sorcs1,Sorcs1_Exon,19,50677987,50678036,50678035,50678036,50,+,GTCAGTCTCAGCTCCTCCATCCGGAAGCGGGTGGCTTTGTCCGGGTCCCG,Promoter (<=1kb),19,50143299,50678646,535348,2,Sorcs1-205,610,Sorcs1-205;Sorcs1-201;Sorcs1-208;Sorcs1-203;Sorcs1-202;Sorcs1-207;Sorcs1-206,Sorcs1;Sorcs1;Sorcs1;Sorcs1;Sorcs1;Sorcs1;Sorcs1,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,8,58178,ENSMUSG00000043531,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
7739,cg20884304,0.0000456,0.000012,3.789486152,0.000181359,gain,ns,-0.0000168,0.0000204,-0.820488007,0.412568418,neg,ns,0.01536355,0.005983998,2.567439148,0.010714014,pos,ns,1.970047781,-0.000707744,0.000205789,-3.439168542,0.000663371,neg,ns,0.665762963,Arhgap15,Arhgap15_Intron,2,44029308,44029357,44029308,44029309,50,-,CGAGCAAAATTGCATTTGTTTTGCAGATTTGCTCATCATTAAATGTGAAA,"Intron (Arhgap15-203/Arhgap15, intron 6 of 14)",2,43748824,44395953,647130,1,Arhgap15-203,280484,Arhgap15-203;Arhgap15-202;Arhgap15-201,Arhgap15;Arhgap15;Arhgap15,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,72,78,76117,ENSMUSG00000049744,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25063,cg21556820,-0.000023,0.00000468,-4.921559498,0.0000014,loss,yes,0.00000652,0.00000794,0.820469418,0.412578995,pos,ns,-0.008630676,0.002327032,-3.708876814,0.000246618,neg,ns,3.607975035,0.000124796,0.00008,1.559431645,0.119914524,pos,ns,0.921556302,Dkk2,Dkk2_Exon,3,132177929,132177978,132177929,132177930,50,+,CGTCATTTCTGGACCAAAATCTGCAAACCAGTGCTCCATCAGGGGGAAGT,"Exon (Dkk2-201/Dkk2, exon 4 of 4)",3,132085292,132180304,95013,1,Dkk2-201,92637,Dkk2-201,Dkk2,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,56811,ENSMUSG00000028031,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22660,cg18606892,-0.00000207,0.00000348,-0.59308202,0.553558687,loss,ns,-0.00000486,0.00000592,-0.820253389,0.412701923,neg,ns,-0.00337514,0.001734291,-1.946120285,0.05254364,neg,ns,1.279479842,0.0000816,0.0000596,1.367420815,0.172484039,pos,ns,0.874480425,BC052040,BC052040_Intron,2,115643291,115643340,115643291,115643292,50,-,CGGCTGTTAAGTGAGCTCTGGGGATGTGCTCGTAAAAGATTTATGAGTAA,"Intron (BC052040-203/BC052040, intron 5 of 10)",2,115581716,115778768,197053,1,BC052040-203,61575,BC052040-203;BC052040-201;BC052040-202,BC052040;BC052040;BC052040,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,37,49,399568,ENSMUSG00000040282,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15863,cg13518541,0.000000976,0.00000144,0.67611368,0.499472567,gain,ns,-0.00000201,0.00000245,-0.820053137,0.412815892,neg,ns,-0.000150628,0.000718131,-0.209750711,0.834000024,neg,ns,0.078833937,0.0000118,0.0000247,0.476214584,0.634256962,pos,ns,0.041700647,Gm6411,Gm6411_Intron,13,83729762,83729811,83729810,83729811,50,+,GACAGGGAGCTGACGTCAATGGACGTGACCTCGCAGCTAAACCTTGAACG,"Intron (C130071C03Rik-201/C130071C03Rik-201, intron 1 of 3)",13,83761132,83762335,1204,2,Gm6411-201,32524,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,36,623241,NA,mapped to different genes,13,83729748,83729900,153,*,153,14,0.620915033,0.998136067,0.091503268,1.88E-10,CpGisland,TRUE,U3,Pr-B
4460,cg17865364,0.0000018,0.00000564,0.318687752,0.750177913,gain,ns,0.00000786,0.00000959,0.820020073,0.412834712,pos,ns,0.004480233,0.002809041,1.594933138,0.111746147,pos,ns,0.951767441,0.000246897,0.0000966,2.555802936,0.011071154,pos,ns,0.090621086,Sox4,Sox4_threeUTR,13,28949892,28949941,28949940,28949941,50,-,ACCCCCTTTATATATTTTTTACAAAAATACACTGAGAAAATAATCAAACG,3' UTR,13,28948919,28953713,4795,2,Sox4-201,3772,Sox4-201,Sox4,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,8,12,20677,ENSMUSG00000076431,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19311,cg06281302,0.0000103,0.00000863,1.19292834,0.233809671,gain,ns,-0.000012,0.0000147,-0.820003496,0.412844148,neg,ns,-0.015118357,0.004295221,-3.519808531,0.000496602,neg,ns,3.303991294,0.000268077,0.000147712,1.814859059,0.070511911,pos,ns,0.829493711,Rara,Rara_Intron,11,98968822,98968871,98968870,98968871,50,-,GATGTCAGAGATAAATGACGCTGACAGACGCCTCCTTGTCTGCGTGGCCG,"Intron (Rara-203/Rara, intron 4 of 8)",11,98927818,98974162,46345,1,Rara-203,41004,Rara-203;Rara-204;Rara-201;Rara-207;Rara-202,Rara;Rara;Rara;Rara;Rara,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,12,19401,ENSMUSG00000037992,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
150,cg05569203,0.0000054,0.000011,0.49312753,0.622271611,gain,ns,-0.0000153,0.0000186,-0.819943994,0.412878017,neg,ns,-0.008739294,0.005453204,-1.602598137,0.110041806,neg,ns,0.958442292,0.000374257,0.000187535,1.995661017,0.046845586,pos,ns,0.182541873,Plcxd3,Plcxd3_fiveUTR,15,4375549,4375598,4375597,4375598,50,-,GAATAATTATTAAAATTAGCATGTGTCTGCGCCATCCTGTGGGTGTGGCG,Promoter (<=1kb),15,4375491,4520414,144924,1,Plcxd3-202,58,Plcxd3-202;Plcxd3-201,Plcxd3;Plcxd3,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,1,239318,ENSMUSG00000049148,conserved gene but different region,15,4375578,4375752,175,*,175,14,0.617142857,0.850694444,0.08,1.18E-09,CpGisland,TRUE,U9,En-Pp
18714,cg03879772,0.0000727,0.000014,5.188738205,0.000000383,gain,yes,-0.0000195,0.0000238,-0.819900081,0.412903014,neg,ns,0.026444287,0.006975653,3.790940922,0.000180347,pos,ns,3.743890966,-0.000744506,0.000239892,-3.103501449,0.002088737,neg,ns,0.398920666,Nfe2l1,Nfe2l1_Exon,11,96827466,96827515,96827466,96827467,50,-,CGGGCAGTGAAGTAATTGTCCAGGTCTATGCTCTTGGGGTGGATACCATA,"Exon (Nfe2l1-211/Nfe2l1, exon 2 of 5)",11,96817414,96829502,12089,2,Nfe2l1-211,1987,Nfe2l1-210;Nfe2l1-212;Nfe2l1-211;Nfe2l1-201;Nfe2l1-203;Nfe2l1-204;Nfe2l1-202;Nfe2l1-205;Nfe2l1-209;Nfe2l1-206;Nfe2l1-208;Nfe2l1-207,Nfe2l1;Nfe2l1;Nfe2l1;Nfe2l1;Nfe2l1;Nfe2l1;Nfe2l1;Nfe2l1;Nfe2l1;Nfe2l1;Nfe2l1;Nfe2l1,0;0;0;0;0;0;0;0;0;-4741;0;1986,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,4,18023,ENSMUSG00000038615,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24859,cg06529027,-0.00000168,0.00000217,-0.772406809,0.440461992,loss,ns,0.00000303,0.00000369,0.819851951,0.412930413,pos,ns,0.0000618,0.001081852,0.057138073,0.954472019,pos,ns,0.020236799,0.0000444,0.0000372,1.194226049,0.233302533,pos,ns,0.062649313,Zc3h6,Zc3h6_fiveUTR,2,128967422,128967471,128967422,128967423,50,+,CGCCATGTTGGTGAGGAGAAATCACCGTTACGGCCACTGTCCAAATCCCC,Promoter (<=1kb),2,128967402,129018563,51162,1,Zc3h6-202,20,Zc3h6-202;Zc3h6-201,Zc3h6;Zc3h6,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,7,8,78751,ENSMUSG00000042851,conserved gene and region,2,128967149,128967791,643,*,643,69,0.6718507,0.959162055,0.107309487,8.30E-55,CpGisland,TRUE,U1,Pr-A
3017,cg26618946,0.00000283,0.00000206,1.373480435,0.170595514,gain,ns,-0.00000287,0.0000035,-0.819742518,0.412992713,neg,ns,0.000163925,0.001024901,0.159942532,0.873030508,pos,ns,0.05897058,0.0000318,0.0000352,0.901996853,0.367758815,pos,ns,0.957072976,Lrmda,Lrmda_Intron,14,22402528,22402577,22402576,22402577,50,-,TTACTTGTGTCACCCTCATTAGTATTTATGGGATTTATCCACATCAATCG,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,382816,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206;Lrmda-202,Lrmda;Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2566,cg16723516,0.0000152,0.0000029,5.217792729,0.000000332,gain,yes,-0.00000404,0.00000493,-0.819739715,0.412994308,neg,ns,-0.003131871,0.001445368,-2.166832485,0.031009048,neg,ns,1.508511569,0.000143335,0.0000497,2.883645843,0.004206051,pos,ns,0.933233225,Usp54,Usp54_Exon,14,20564979,20565028,20564979,20564980,50,+,CGAATACTGATTTGCAACTTCTTATCGACTAGGGCTCTGCTGTGCGTGCT,"Exon (1810062O18Rik-203/1810062O18Rik-203, exon 3 of 3)",14,20548912,20618354,69443,2,Usp54-202,53326,Usp54-202;Usp54-201,Usp54;Usp54,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,9,78787,ENSMUSG00000034235,mapped to different genes,14,20564798,20565024,227,*,227,12,0.568281938,0.656702025,0.052863436,0.00000219,CpGisland,TRUE,NA,NRS
27324,cg10439765,0.00000364,0.00000264,1.38142365,0.168143582,gain,ns,-0.00000367,0.00000448,-0.819649991,0.413045393,neg,ns,0.001373282,0.001311611,1.047019311,0.295906329,pos,ns,0.528845745,-0.0000331,0.0000451,-0.733740484,0.46366147,neg,ns,0.022776145,Slc12a5,Slc12a5_fiveUTR,2,164968208,164968257,164968256,164968257,50,+,AGGGGGCGCGCGCGGGTGTGAGCGTGTGTCCGTGTGCGAGTGTGTGTGCG,Promoter (<=1kb),2,164968239,164999727,31489,1,Slc12a5-208,0,Slc12a5-202;Slc12a5-209;Slc12a5-207;Slc12a5-201;Slc12a5-208;Slc12a5-210;Slc12a5-206,Slc12a5;Slc12a5;Slc12a5;Slc12a5;Slc12a5;Slc12a5;Slc12a5,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,9,57138,ENSMUSG00000017740,conserved gene and region,2,164967855,164968493,639,*,639,68,0.719874804,0.821958232,0.106416275,9.46E-54,CpGisland,TRUE,NA,NRS
18586,cg06411456,0.0000276,0.00000612,4.515371773,0.00000899,gain,ns,0.00000852,0.0000104,0.819512404,0.413123735,pos,ns,-0.000411458,0.003044488,-0.135148396,0.892582256,neg,ns,0.049351751,0.000099,0.0001047,0.945467941,0.345156369,pos,ns,0.095677232,Hoxb5,Hoxb5_fiveUTR,11,96303506,96303555,96303554,96303555,50,-,CAAAACGAAGTACAGTGCATCGCTATAATTCATTAATACATCATAAATCG,Promoter (<=1kb),11,96303512,96306120,2609,1,Hoxb5-201,0,Hoxb5-202;Hoxb5-201;Hoxb6-202;Hoxb6-201,Hoxb5;Hoxb5;Hoxb6;Hoxb6,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,34,15413,ENSMUSG00000038700,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
5770,cg23702568,-0.00000217,0.00000172,-1.258378241,0.20920191,loss,ns,-0.0000024,0.00000293,-0.819468936,0.413148487,neg,ns,-0.0000818,0.000857872,-0.09530926,0.924130767,neg,ns,0.034266571,0.00000861,0.0000295,0.291928502,0.770536554,pos,ns,0.063787035,Wapl,Wapl_fiveUTR,14,34673957,34674006,34673957,34673958,50,-,CGCAAATGGCGTTGAGATGGTTCAGGGCCCTGTTCAAACTCCAGCACTGA,Promoter (<=1kb),14,34673928,34747983,74056,1,Wapl-201,29,Wapl-201;Wapl-205;Wapl-202,Wapl;Wapl;Wapl,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,6,218914,ENSMUSG00000041408,conserved gene and region,14,34673370,34674481,1112,*,1112,125,0.705035971,0.911840146,0.112410072,1.48E-101,CpGisland,TRUE,U1,Pr-A
17811,cg03990624,-0.00000514,0.00000218,-2.351464316,0.019325375,loss,ns,-0.00000304,0.00000371,-0.819459319,0.413153963,neg,ns,-0.002089611,0.001087147,-1.922106054,0.055508752,neg,ns,1.255638536,0.0000106,0.0000374,0.284446985,0.776257769,pos,ns,0.965762775,Irx3,Irx3_Intergenic_upstream,8,91827376,91827425,91827376,91827377,50,+,CGAATATAATGTACCAATGATTGCTTTTCCATTGAAAGCACAAACGGTTT,Distal Intergenic,8,91798525,91802067,3543,2,Irx3-202,-25309,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,15,36,16373,ENSMUSG00000031734,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10116,cg26675595,0.000165352,0.0000173,9.553665751,3.99E-19,gain,yes,-0.0000241,0.0000294,-0.8194593,0.413153974,neg,ns,0.028991781,0.008614237,3.365565893,0.000859966,pos,ns,3.065518644,-0.000751127,0.000296243,-2.535509114,0.011719511,neg,ns,0.298830791,Gm28308,Gm28308_Intron,6,52194730,52194779,52194778,52194779,50,+,CTTGAATGCAACCCTGTCCCAAGTTTCAAAGTGACCGAACAGTGACACCG,"Intron (Hoxaas3-202/Hoxaas3-202, intron 1 of 2)",6,52163359,52213339,49981,2,Gm28308-201,18560,Gm28308-201;Hoxa3-201;Hoxa3-203;Hoxa4-201,Gm28308;Hoxa3;Hoxa3;Hoxa4,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,46,103,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
10382,cg25455370,0.00000436,0.00000183,2.383802841,0.017736395,gain,ns,0.00000255,0.00000311,0.819438305,0.41316593,pos,ns,0.002695136,0.00091069,2.959442088,0.003319501,pos,ns,2.478927223,-0.0000773,0.0000313,-2.468255141,0.014116746,neg,ns,0.069320489,Creb5,Creb5_fiveUTR,6,53287292,53287341,53287340,53287341,50,-,AATAGAATGTATTGTAATCTTTGCTCAGTCCAACGTGGTCCCTTCACCCG,Promoter (<=1kb),6,53287295,53397215,109921,1,Creb5-208,0,Creb5-214;Creb5-203;Creb5-213;Creb5-208;Creb5-211;Creb5-210;Creb5-209;Creb5-204;Creb5-207;Creb5-215;Creb5-202,Creb5;Creb5;Creb5;Creb5;Creb5;Creb5;Creb5;Creb5;Creb5;Creb5;Creb5,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,7,12,231991,ENSMUSG00000053007,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
9603,cg20206595,-0.0000165,0.0000115,-1.439005632,0.151157831,loss,ns,0.0000159,0.0000195,0.819093799,0.413362142,pos,ns,-0.008736642,0.005703001,-1.531937671,0.126557654,neg,ns,0.897711585,0.0000244,0.000196126,0.124495993,0.901003261,pos,ns,0.828567453,Gm19599,Gm19599_Intergenic_upstream,12,49484219,49484268,49484267,49484268,50,+,TGCTGCCTTTGAGCAGACCTGGCTTGCATGCTGTGACAGGGCAATTGTCG,Distal Intergenic,12,49499008,49499365,358,1,Gm19599-201,-14740,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,3,100503229,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18274,cg09265662,-0.0000106,0.00000298,-3.546683618,0.000450381,loss,ns,0.00000415,0.00000507,0.81903247,0.413397078,pos,ns,0.003558146,0.001484728,2.396496789,0.017144827,pos,ns,1.765866893,-0.000109191,0.0000511,-2.138500988,0.033257488,neg,ns,0.927798558,Xylt2,Xylt2_Exon,11,94667218,94667267,94667266,94667267,50,+,GCGTCACCAGGTAGCCCTGGAAATGGTCGTCATAGAAATACAGGTGCACG,"Exon (Xylt2-201/Xylt2, exon 9 of 11)",11,94663851,94677515,13665,2,Xylt2-201,10248,Xylt2-201;Xylt2-204;Xylt2-203;Xylt2-205;Xylt2-202,Xylt2;Xylt2;Xylt2;Xylt2;Xylt2,0;0;0;0;10140,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,217119,ENSMUSG00000020868,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17752,cg17552603,-0.00000197,0.0000011,-1.796437912,0.073398374,loss,ns,0.00000153,0.00000187,0.818938884,0.413450391,pos,ns,0.000395322,0.000546675,0.723139939,0.470139164,pos,ns,0.32777357,0.00000444,0.0000188,0.236320659,0.813339924,pos,ns,0.969936042,Fto,Fto_Intron,8,91624548,91624597,91624596,91624597,50,+,TTCTGCTAACTTTCAGACTTCATTGCTGACAACAGGCCTCTTGGCTTTCG,"Intron (Fto-201/Fto, intron 8 of 8)",8,91313525,91668439,354915,1,Fto-201,311023,Fto-201;Fto-205,Fto;Fto,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,26,26383,ENSMUSG00000055932,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3482,cg02658499,-0.0000048,0.00000522,-0.91801159,0.359326477,loss,ns,0.00000727,0.00000888,0.818793314,0.413533328,pos,ns,0.001475152,0.002600348,0.567290198,0.5709276,pos,ns,0.243418962,0.0000651,0.0000894,0.727666306,0.467367101,pos,ns,0.889720524,Bcl11a,Bcl11a_Exon,11,24163795,24163844,24163795,24163796,50,+,CGAGTTCTGCGGCAAGACGTTCAAATTTCAGAGCAACCTGGTGGTGCACC,"Exon (Bcl11a-201/Bcl11a, exon 4 of 5)",11,24078056,24173194,95139,1,Bcl11a-201,85739,Bcl11a-201;Bcl11a-203;Bcl11a-202;Bcl11a-204;Bcl11a-206,Bcl11a;Bcl11a;Bcl11a;Bcl11a;Bcl11a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,51,98,14025,ENSMUSG00000000861,conserved gene and region,11,24163725,24163848,124,*,124,9,0.612903226,0.894230769,0.072580645,0.00000547,CpGisland,TRUE,U10,Tr-S
26898,cg15772525,-0.00000544,0.00000315,-1.728235757,0.084941741,loss,ns,-0.00000437,0.00000534,-0.818700707,0.413586094,neg,ns,-0.003938991,0.00156548,-2.516156341,0.012369109,neg,ns,1.907661575,0.0000555,0.0000538,1.031259915,0.303222842,pos,ns,0.922681958,Prdm16,Prdm16_Intron,4,154494769,154494818,154494769,154494770,50,-,CGCGGGTATTTTAAAGGAAATGAGATCCGTGTGTTTCTGATTTATTTATA,"Intron (Prdm16-201/Prdm16, intron 2 of 16)",4,154316125,154636866,320742,2,Prdm16-201,142048,Prdm16-201;Prdm16-202;Prdm16-203;Prdm16-204;Prdm16-205;Prdm16-206;Prdm16-210;Prdm16-207;Prdm16-209;Prdm16-212,Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,32,70673,ENSMUSG00000039410,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27381,cg24734899,-0.00000437,0.00000263,-1.660121386,0.097901179,loss,ns,0.00000366,0.00000447,0.818686935,0.413593941,pos,ns,0.001699675,0.00130955,1.297908431,0.195283673,pos,ns,0.709334066,-0.0000676,0.000045,-1.50178112,0.134171538,neg,ns,0.932099143,Pou2f1,Pou2f1_Exon,1,165897654,165897703,165897702,165897703,50,+,GGCTTCAACTTGCACATGTTCTTAAAGCTGAGGTTCAAGGCTTCAAATCG,"Exon (Pou2f1-205/Pou2f1, exon 10 of 17)",1,165865154,165934948,69795,2,Pou2f1-205,37245,Pou2f1-205;Pou2f1-208;Pou2f1-207;Pou2f1-206;Pou2f1-216;Pou2f1-209;Pou2f1-204;Pou2f1-201;Pou2f1-202;Pou2f1-213;Pou2f1-203;Pou2f1-215,Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,18,18986,ENSMUSG00000026565,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22538,cg12420314,-0.0000275,0.0000076,-3.622408582,0.000340908,loss,ns,-0.0000106,0.0000129,-0.818558472,0.413667146,neg,ns,-0.003357582,0.003784101,-0.887286639,0.375612454,neg,ns,0.425260016,0.000063,0.000130135,0.483861671,0.628825665,pos,ns,0.925863558,Wwox,Wwox_Intron,8,115010738,115010787,115010738,115010739,50,+,CGTTATCTCAAATTAAATCTTAAATTGAGCTTGTGGTTCTGTGAATTAAT,"Intron (Wwox-201/Wwox, intron 8 of 8)",8,114439655,115352708,913054,1,Wwox-201,571083,Wwox-201;Wwox-204;Wwox-209,Wwox;Wwox;Wwox,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,32,32,80707,ENSMUSG00000004637,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8991,cg00793774,-0.0000036,0.00000122,-2.961665348,0.003296291,loss,ns,0.00000169,0.00000207,0.818485228,0.413708887,pos,ns,0.000572249,0.0006054,0.94524086,0.345272076,pos,ns,0.461838543,-0.0000195,0.0000208,-0.93681626,0.349582324,neg,ns,0.039980888,Trim8,Trim8_fiveUTR,19,46501733,46501782,46501781,46501782,50,-,GTGTCTCTGGCCGGGGACTGGAATTTCATCTGAATGACTGCCCCTGCGCG,Promoter (<=1kb),19,46501702,46516848,15147,1,Trim8-201,31,Trim8-201,Trim8,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,21,93679,ENSMUSG00000025034,conserved gene and region,19,46501691,46502449,759,*,759,94,0.748353096,0.884615385,0.123847167,4.99E-81,CpGisland,TRUE,U1,Pr-A
8637,cg26835090,0.000071,0.0000145,4.909713058,0.00000148,gain,yes,-0.0000201,0.0000246,-0.818473227,0.413715727,neg,ns,0.022093227,0.007195212,3.070545634,0.002325834,pos,ns,2.633421292,-0.00036988,0.000247443,-1.494811514,0.135980864,neg,ns,0.514378207,Btrc,Btrc_Intron,19,45476084,45476133,45476132,45476133,50,-,ACGATCAATTCGCCTCGTTTTGGCTCTGTACTTAATGCACAAACAGTGCG,"Intron (Btrc-204/Btrc, intron 1 of 2)",19,45363734,45507736,144003,1,Btrc-204,112350,Btrc-204;Btrc-201;Btrc-210;Btrc-202;Btrc-203;Btrc-209,Btrc;Btrc;Btrc;Btrc;Btrc;Btrc,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,63,98,12234,ENSMUSG00000025217,conserved gene and region,19,45476012,45476140,129,*,129,10,0.527131783,1.151785714,0.07751938,0.000000711,CpGisland,TRUE,NA,NRS
15816,cg03179276,-0.0000233,0.00000609,-3.830445786,0.00015482,loss,ns,0.00000846,0.0000103,0.818181365,0.413882083,pos,ns,-0.003298169,0.003030799,-1.088217432,0.277344434,neg,ns,0.556980545,0.000163678,0.000104229,1.570370851,0.117348952,pos,ns,0.892939851,Rpl28-ps2,Rpl28-ps2_Intergenic_upstream,3,83537671,83537720,83537719,83537720,50,+,CAAGCCAAGAAATACAAGACCTATAAAATCCTGAAGCATATTAAATGACG,Distal Intergenic,3,83686721,83687274,554,1,Rpl28-ps2-201,-149001,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,100042091,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23533,cg17722489,0.0000288,0.00000322,8.926615872,3.94E-17,gain,yes,-0.00000448,0.00000547,-0.817971679,0.414001626,neg,ns,0.002097073,0.001603676,1.307666481,0.191955396,pos,ns,0.716799675,0.00004,0.0000552,0.725090927,0.468943211,pos,ns,0.066152651,Sp8,Sp8_Promoter,12,118840583,118840632,118840631,118840632,50,-,ACAAAATTATTCGCATTATTTATGCTACATTGAGCGATCTAATTTCTTCG,Promoter (5-6kb),12,118846329,118852576,6248,1,Sp8-201,-5746,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,27,29,320145,ENSMUSG00000048562,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
20127,cg24551749,0.000204794,0.0000166,12.31956767,1.17E-28,gain,yes,-0.0000231,0.0000282,-0.817938143,0.414020747,neg,ns,0.007543502,0.008273675,0.911747488,0.36261011,pos,ns,0.440560091,0.000131042,0.000284531,0.46055374,0.64544171,pos,ns,0.177477725,Atp5g2,Atp5g2_Promoter,15,102672440,102672489,102672488,102672489,50,+,CTTGCAGGCGGGCGGCAGAGGGATTTATATGGGCCCGTTATTTCACACCG,Promoter (<=1kb),15,102665801,102672352,6552,2,Atp5g2-203,-88,Atp5g2-202;Atp5g2-201;Atp5g2-204;Atp5g2-203,Atp5g2;Atp5g2;Atp5g2;Atp5g2,-1313;-4691;-4697;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,10,18,67942,ENSMUSG00000062683,mapped to different genes,15,102672078,102672489,412,*,412,37,0.621359223,0.940117176,0.089805825,1.33E-26,CpGisland,TRUE,U1,Pr-A
17002,cg01565849,0.0000362,0.00000866,4.179562935,0.000038,gain,ns,-0.000012,0.0000147,-0.817937593,0.414021061,neg,ns,0.004298906,0.004312079,0.996945221,0.319568636,pos,ns,0.495435851,-0.0000505,0.000148292,-0.340420199,0.733770677,neg,ns,0.676353199,Zfp423,Zfp423_Intron,8,87833965,87834014,87834013,87834014,50,-,CACTCACCTATTGACATTTTTACATAGTTTTTGGATTTAGTATCCAGCCG,"Intron (Zfp423-202/Zfp423, intron 3 of 7)",8,87661810,87959595,297786,2,Zfp423-202,125581,Zfp423-202;Zfp423-201;Zfp423-207;Zfp423-205;Zfp423-204,Zfp423;Zfp423;Zfp423;Zfp423;Zfp423,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,42,53,94187,ENSMUSG00000045333,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15798,cg00553880,-0.00000773,0.00000169,-4.578890306,0.00000678,loss,ns,0.00000234,0.00000287,0.817761231,0.414121624,pos,ns,0.001552945,0.00084004,1.848657288,0.065459406,pos,ns,1.184027939,-0.0000469,0.0000289,-1.624856798,0.105209305,neg,ns,0.057573984,Psip1,Psip1_Promoter,4,83486696,83486745,83486696,83486697,50,-,CGCCCCTGCTGGCTTCTCTGCGTGTGTGTATTTGTATGTGTACTGTATGT,Promoter (<=1kb),4,83455680,83486459,30780,2,Psip1-201,-286,Psip1-201;Psip1-202;Psip1-203;Psip1-205,Psip1;Psip1;Psip1;Psip1,0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,2,101739,ENSMUSG00000028484,conserved gene and region,4,83486576,83486817,242,*,242,17,0.652892562,0.677536232,0.070247934,1.03E-10,CpGisland,TRUE,U1,Pr-A
18742,cg15636011,-0.00000644,0.0000106,-0.607818444,0.543752907,loss,ns,0.0000147,0.000018,0.817749724,0.414128186,pos,ns,0.006623702,0.005275497,1.255559761,0.210221173,pos,ns,0.677323546,-0.000142424,0.000181424,-0.785034179,0.433033057,neg,ns,0.726076458,Gm9287,Gm9287_Intergenic_downstream,14,97087276,97087325,97087276,97087277,50,-,CGATTTTTAAAATGCTTTGAAGCTTCCTATTAAAGGTCTTAGGCAGCTCA,Distal Intergenic,14,96967825,96969754,1930,1,Gm9287-201,119500,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,6,668654,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12831,cg07111643,0.00000389,0.00000258,1.509039619,0.132307159,gain,ns,0.00000358,0.00000438,0.8176766,0.414169886,pos,ns,0.003403771,0.001283002,2.652974528,0.008389568,pos,ns,2.076260381,-0.00012737,0.0000441,-2.886736536,0.004166044,neg,ns,0.937459155,Ebf2,Ebf2_Intron,14,67267135,67267184,67267183,67267184,50,-,TTATTACAGTGCATCAAGCAGGGTCATGGTTATTCCCAAGCCTTTAAGCG,"Intron (Ebf2-201/Ebf2, intron 7 of 16)",14,67233292,67429777,196486,1,Ebf2-201,33843,Ebf2-201;Ebf2-203;Ebf2-202,Ebf2;Ebf2;Ebf2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,21,13592,ENSMUSG00000022053,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20805,cg20615391,-0.000013,0.00000468,-2.772484427,0.005899631,loss,ns,-0.0000065,0.00000795,-0.817660847,0.414178869,neg,ns,-0.002437682,0.002329474,-1.046451447,0.296167888,neg,ns,0.528462032,0.0000351,0.0000801,0.437905103,0.661760035,pos,ns,0.838867582,Fam160a2,Fam160a2_threeUTR,7,105381453,105381502,105381501,105381502,50,-,AGAGCGGAGCAGGGGCTGGGGGTGACAGGCCAGCTGGGCCACCAGCCCCG,3' UTR,7,105371211,105400054,28844,2,Fam160a2-208,18552,Fam160a2-208;Fam160a2-213;Fam160a2-206;Fam160a2-201;Fam160a2-203;Fam160a2-202;Fam160a2-204;Fam160a2-210;Fam160a2-207;Fam160a2-211;Fam160a2-212;Fam160a2-205;Gm5901-203;Gm5901-201;Gm5901-202,Fam160a2;Fam160a2;Fam160a2;Fam160a2;Fam160a2;Fam160a2;Fam160a2;Fam160a2;Fam160a2;Fam160a2;Fam160a2;Fam160a2;Gm5901;Gm5901;Gm5901,0;0;0;0;0;0;0;0;0;0;8012;7609;6415;6403;3630,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,5,5,74349,ENSMUSG00000044465,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21078,cg11654153,-0.00000428,0.00000132,-3.241907506,0.00131659,loss,ns,0.00000183,0.00000224,0.817596975,0.414215297,pos,ns,0.00028778,0.000657237,0.437863099,0.661790452,pos,ns,0.179279503,-0.0000133,0.0000226,-0.590114647,0.555543688,neg,ns,0.033352923,Dusp7,Dusp7_Exon,9,106368957,106369006,106369005,106369006,50,-,GCCATGCCCTGCAAGAGCGCCGAGTGGCTGCAGGAGGAGCTGGAGGCGCG,Promoter (<=1kb),9,106368632,106375724,7093,1,Dusp7-201,325,Dusp7-201;Dusp7-202;Dusp7-203,Dusp7;Dusp7;Dusp7,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,4,235584,ENSMUSG00000053716,conserved gene and region,9,106368388,106369299,912,*,912,126,0.762061404,0.955974843,0.138157895,2.02E-115,CpGisland,TRUE,U1,Pr-A
17995,cg01456511,0.0000402,0.00001,4.011593926,0.0000757,gain,ns,0.0000139,0.000017,0.817563102,0.414234615,pos,ns,0.003915291,0.004992908,0.784170457,0.433538869,pos,ns,0.362971959,0.0000777,0.000171706,0.452376807,0.651313948,pos,ns,0.412180575,Arx,Arx_Intron,X,93292257,93292306,93292257,93292258,50,+,CGCTCAGTTCCAAGCAGGTATTTGGCTGCGATTAAGTCTCCAATCGGGCT,"Intron (Arx-201/Arx, intron 3 of 4)",20,93286496,93298357,11862,1,Arx-201,5761,Arx-203;Arx-201;Arx-202,Arx;Arx;Arx,5812;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,32,11878,ENSMUSG00000035277,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
2340,cg16762797,0.0000199,0.00000637,3.120680866,0.001974173,gain,ns,-0.00000885,0.0000108,-0.817491398,0.414275513,neg,ns,-0.008867028,0.00317041,-2.796807777,0.005483512,neg,ns,2.260941189,0.000207296,0.00010903,1.901273604,0.058193292,pos,ns,0.912117411,Dmpk,Dmpk_Exon,7,19092214,19092263,19092214,19092215,50,+,CGGGGGTCCCCAGTCCCCGGGCCACGGATCCACCTTCCCATGTAAGACCC,Promoter (<=1kb),7,19092218,19093771,1554,1,Dmpk-205,0,Dmpk-201;Dmpk-218;Dmpk-202;Dmpk-203;Dmpk-219;Dmpk-216;Dmpk-208;Dmpk-209;Dmpk-211;Dmpk-213;Dmpk-217;Dmpk-206;Dmpk-215;Dmpk-207;Dmpk-212;Dmpk-214;Dmpk-205;Dmpk-210;Six5-201,Dmpk;Dmpk;Dmpk;Dmpk;Dmpk;Dmpk;Dmpk;Dmpk;Dmpk;Dmpk;Dmpk;Dmpk;Dmpk;Dmpk;Dmpk;Dmpk;Dmpk;Dmpk;Six5,0;0;0;0;0;7504;0;0;0;4945;4721;4603;4468;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,2,13400,ENSMUSG00000030409,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
3616,cg06060112,-0.00000328,0.00000756,-0.433134983,0.665217921,loss,ns,0.0000105,0.0000128,0.817491278,0.414275581,pos,ns,-0.004461978,0.003763972,-1.185443883,0.236749884,neg,ns,0.625710225,0.0000507,0.000129443,0.391537835,0.695668724,pos,ns,0.8888992,Gm12067,Gm12067_Intergenic_upstream,11,24783705,24783754,24783705,24783706,50,-,CGTTGGTGATATTTAATACCATTTTATGAGGTGCCATCTTATAAAGACAA,Distal Intergenic,11,24552438,24553962,1525,2,Gm12067-201,-229792,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,26,58,100417843,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
54,cg15312434,-0.0000265,0.00000794,-3.339635233,0.0009413,loss,ns,0.000011,0.0000135,0.817430118,0.414310466,pos,ns,-0.007991477,0.003949714,-2.023305074,0.043899543,neg,ns,1.357540006,-0.000101738,0.00013583,-0.749004625,0.454422363,neg,ns,0.696825902,Morc2a,Morc2a_Exon,11,3676697,3676746,3676697,3676698,50,-,CGGATGAGGATCTTCATCCATGGGCACAAGGTGCAGACCAAGAGGCTCTC,"Exon (Morc2a-202/Morc2a, exon 9 of 26)",11,3649191,3690477,41287,1,Morc2a-202,27506,Morc2a-202;Morc2a-201;Morc2a-203;Morc2a-205;Morc2a-204,Morc2a;Morc2a;Morc2a;Morc2a;Morc2a,0;0;-3161;-3521;-3616,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,74522,ENSMUSG00000034543,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19615,cg05570066,-0.00000424,0.0000028,-1.51430364,0.130967733,loss,ns,0.00000389,0.00000476,0.817401926,0.414326547,pos,ns,0.002481652,0.001393356,1.781060751,0.075881605,pos,ns,1.119863494,-0.0000598,0.0000479,-1.247117218,0.213295896,neg,ns,0.948615763,Gm8641,Gm8641_Intergenic_upstream,9,100131164,100131213,100131212,100131213,50,+,GAAGGTCTGTATCATATTGGAATCTGTCAGTGCAGGTCAGGGAGTCCGCG,Distal Intergenic,9,99946564,99947389,826,2,Gm8641-201,-183775,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,15,667456,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
772,cg24470284,-0.00000257,0.00000326,-0.787212291,0.431759036,loss,ns,-0.00000453,0.00000554,-0.817375443,0.414341654,neg,ns,-0.003728052,0.001622616,-2.297556145,0.022252926,neg,ns,1.652612878,0.0000523,0.0000558,0.936779115,0.349601404,pos,ns,0.895125297,Usp7,Usp7_threeUTR,16,8698779,8698828,8698827,8698828,50,+,TTTTCTCTTCTTGTAATCGCTCCACCAACTGCTGAGGAATATCATGGTCG,3' UTR,16,8689595,8792308,102714,2,Usp7-207,93480,Usp7-207;Usp7-206;Usp7-208;Usp7-210;Usp7-211;Usp7-203;Usp7-213;Usp7-212;Usp7-201;Usp7-202,Usp7;Usp7;Usp7;Usp7;Usp7;Usp7;Usp7;Usp7;Usp7;Usp7,0;0;0;0;0;-1198;-247;0;4953;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,10,252870,ENSMUSG00000022710,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8951,cg00995686,-0.00000844,0.00000606,-1.392960182,0.164629933,loss,ns,0.00000841,0.0000103,0.817343798,0.414359705,pos,ns,0.001162577,0.003015768,0.385499438,0.700131814,pos,ns,0.154820188,-0.000053,0.000103712,-0.510644481,0.609963458,neg,ns,0.896514803,4931429L15Rik,4931429L15Rik_Exon,9,46397849,46397898,46397897,46397898,50,+,GTATGGATTTATACATTAGATCCACATTAACACCAAATCGTTTGATCACG,"Exon (Gm47141-201/Gm47141-201, exon 1 of 2)",9,46303361,46319986,16626,2,4931429L15Rik-201,-77863,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,22,74361,ENSMUSG00000056617,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24796,cg10612145,-0.0000065,0.00000409,-1.589373536,0.112995389,loss,ns,0.00000568,0.00000695,0.817277746,0.414397385,pos,ns,0.003131711,0.002036818,1.537550647,0.125178552,pos,ns,0.902470075,-0.000107412,0.00007,-1.533446117,0.126185868,neg,ns,0.841611828,Smarcc2,Smarcc2_Exon,10,128488003,128488052,128488051,128488052,50,+,ACCCAGGCGTGGCGGGTAATGCTCCTTTGGGTTTGCCTTTTGGCATGCCG,"Exon (Smarcc2-201/Smarcc2, exon 27 of 28)",10,128459248,128490482,31235,1,Smarcc2-205,28755,Myl6-201;Myl6-213;Myl6-212;Myl6-202;Myl6-206;Myl6-209;Myl6-211;Myl6-205;Myl6-203;Myl6-214;Myl6-208;Myl6-215;Myl6-207;Myl6-210;Myl6-204;Smarcc2-205;Smarcc2-201;Smarcc2-202;Smarcc2-203,Myl6;Myl6;Myl6;Myl6;Myl6;Myl6;Myl6;Myl6;Myl6;Myl6;Myl6;Myl6;Myl6;Myl6;Myl6;Smarcc2;Smarcc2;Smarcc2;Smarcc2,0;0;0;0;0;0;0;0;0;0;0;5777;5741;6093;5522;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,16,68094,ENSMUSG00000025369,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8079,cg01133215,-0.00000455,0.00000146,-3.114752402,0.002013036,loss,ns,0.00000203,0.00000248,0.817259349,0.41440788,pos,ns,-0.000222753,0.000727223,-0.306306535,0.759576881,neg,ns,0.119428262,0.0000165,0.000025,0.661179176,0.508988502,pos,ns,0.971198405,Runx2,Runx2_threeUTR,17,44724771,44724820,44724819,44724820,50,-,AGATCGTTGAACCTTGCTACTTGGTTTTTCATAACAGCAGAGGCATTCCG,3' UTR,17,44495987,44736176,240190,2,Runx2-212,11356,Runx2-212;Runx2-214;Runx2-203;Runx2-202;Runx2-213;Runx2-204;Runx2-210;Runx2-211;Runx2-207;Runx2-201;Runx2-209;Runx2-205;Runx2-206,Runx2;Runx2;Runx2;Runx2;Runx2;Runx2;Runx2;Runx2;Runx2;Runx2;Runx2;Runx2;Runx2,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,10,20,12393,ENSMUSG00000039153,conserved gene and region,17,44724704,44724890,187,*,187,14,0.534759358,1.074712644,0.07486631,2.85E-09,CpGisland,TRUE,U11,Tr-P
11369,cg10147012,0.00000459,0.00000297,1.547224691,0.122829311,gain,ns,-0.00000412,0.00000504,-0.817191452,0.414446615,neg,ns,0.001584599,0.0014764,1.073285642,0.283977728,pos,ns,0.54671572,-0.0000902,0.0000508,-1.775612702,0.076777759,neg,ns,0.063900216,Hand1,Hand1_Promoter,11,57837086,57837135,57837134,57837135,50,+,AGGACCTGTCAGGGCCCGGGTAATTACAGGAACTCCATAAAAAGGACCCG,Promoter (4-5kb),11,57831694,57832818,1125,2,Hand1-202,-4268,Hand1-203;Hand1-201;Hand1-202,Hand1;Hand1;Hand1,-4268;-4939;-4268,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,4,4,15110,ENSMUSG00000037335,conserved gene and region,11,57837102,57837281,180,*,180,18,0.533333333,1.408695652,0.1,4.82E-14,CpGisland,TRUE,U13,Hc-P
18944,cg13411044,-0.00000183,0.00000102,-1.790166301,0.07440298,loss,ns,0.00000142,0.00000174,0.81709687,0.414500578,pos,ns,0.001085951,0.000509224,2.132561494,0.033746236,pos,ns,1.471774659,-0.0000489,0.0000175,-2.792686297,0.005552093,neg,ns,0.974246932,Mitf,Mitf_threeUTR,6,98006123,98006172,98006123,98006124,50,+,CGTGTATTTTTCCCACAGAGTCTGAAGCAAGAGCACTGGCCAAAGAGAGG,3' UTR,6,97807052,98018593,211542,1,Mitf-207,199071,Mitf-207;Mitf-202;Mitf-203;Mitf-204;Mitf-201;Mitf-205;Mitf-208,Mitf;Mitf;Mitf;Mitf;Mitf;Mitf;Mitf,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,16,17342,ENSMUSG00000035158,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26690,cg24129390,-0.0000022,0.00000461,-0.476324839,0.634178513,loss,ns,0.0000064,0.00000784,0.81697463,0.414570327,pos,ns,0.002279849,0.002296273,0.992847463,0.321558621,pos,ns,0.492739842,-0.000109109,0.000079,-1.381680607,0.16806471,neg,ns,0.532989987,Gm42906,Gm42906_Intron,5,151127557,151127606,151127605,151127606,50,+,ATTCTAGCCTGATCAATGGTGTGCCTGGTTTGAGGTTGGTTTTGGCCCCG,"Intron (Stard13-202/Stard13, intron 1 of 13)",5,151063546,151428163,364618,2,Gm42906-201,300557,Gm42906-201;Stard13-202;Stard13-201;Stard13-208;Stard13-207;Stard13-204;Stard13-206;Stard13-203,Gm42906;Stard13;Stard13;Stard13;Stard13;Stard13;Stard13;Stard13,0;0;0;-14;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20835,cg17475770,0.0000186,0.00000903,2.061883373,0.040052059,gain,ns,0.0000125,0.0000153,0.816932691,0.414594258,pos,ns,0.012802138,0.00449367,2.848927297,0.004680138,pos,ns,2.329741381,-0.000261274,0.000154537,-1.690689254,0.0919013,neg,ns,0.900235641,Trim3,Trim3_threeUTR,7,105610856,105610905,105610904,105610905,50,+,CAGGCTCACCCAGTCACCAAAGCAAGAACCGAATAAATAAAGTGCAACCG,3' UTR,7,105604463,105633508,29046,2,Trim3-203,22603,Trim3-203;Trim3-201;Trim3-202;Trim3-205;Trim3-209;Trim3-208,Trim3;Trim3;Trim3;Trim3;Trim3;Trim3,0;0;0;0;951;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,2,55992,ENSMUSG00000036989,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26606,cg12249796,-0.000000795,0.00000104,-0.768045022,0.443045085,loss,ns,0.00000144,0.00000176,0.816926804,0.414597617,pos,ns,0.001019126,0.000515396,1.977365465,0.048885916,pos,ns,1.310816243,-0.0000425,0.0000177,-2.39837352,0.017058859,neg,ns,0.968114786,Pex14,Pex14_Exon,4,148984460,148984509,148984460,148984461,50,+,CGAAAACAGATACCATCAACTGCAAATGTGGCTCATTTTAATCTGTAATG,"Exon (Gm17029-202/Gm17029-202, exon 3 of 3)",4,148960535,149099876,139342,2,Pex14-201,115367,Pex14-201;Pex14-202;Pex14-205;Pex14-203,Pex14;Pex14;Pex14;Pex14,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,48,56273,ENSMUSG00000028975,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2819,cg09885336,-0.00000551,0.00000232,-2.372368881,0.018284555,loss,ns,0.00000322,0.00000395,0.816873394,0.414628096,pos,ns,-0.00175581,0.001156164,-1.518651694,0.129869362,neg,ns,0.886493293,-0.00001,0.0000398,-0.251845936,0.801327029,neg,ns,0.941324726,Reln,Reln_Exon,5,21896010,21896059,21896058,21896059,50,+,AAAGCCCATTGATCATGACCTGTTCCATTGTGGCGTGGTTGCCACCAGCG,"Exon (Reln-207/Reln, exon 63 of 65)",5,21884454,22344702,460249,2,Reln-207,448643,Reln-207;Reln-205;Reln-201;Reln-214;Reln-215;Reln-213;Reln-203,Reln;Reln;Reln;Reln;Reln;Reln;Reln,0;0;0;-2114;0;-22;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,6,19699,ENSMUSG00000042453,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24190,cg25080313,-0.0000214,0.00000375,-5.71492825,2.58E-08,loss,yes,-0.0000052,0.00000636,-0.816857054,0.414637421,neg,ns,-0.005741029,0.001864233,-3.079566455,0.002258586,neg,ns,2.646163375,0.0000776,0.0000641,1.21026946,0.22709751,pos,ns,0.896467234,Tnrc6a,Tnrc6a_Exon,7,123189910,123189959,123189958,123189959,50,-,GAGCTGTGGAAGGTCCCTTTGCCACCTAAAAACATCACTGCTCCGTCCCG,"Exon (Tnrc6a-201/Tnrc6a, exon 21 of 24)",7,123124177,123193987,69811,1,Tnrc6a-203,65733,Tnrc6a-203;Tnrc6a-201;Tnrc6a-205;Tnrc6a-208,Tnrc6a;Tnrc6a;Tnrc6a;Tnrc6a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,17,24,233833,ENSMUSG00000052707,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12188,cg02105305,-0.000011,0.00000205,-5.373701176,0.000000152,loss,yes,0.00000284,0.00000348,0.816785751,0.414678112,pos,ns,0.003093774,0.001018822,3.036618197,0.002595586,pos,ns,2.58576455,-0.0000753,0.000035,-2.149408063,0.032375808,neg,ns,0.955859421,Fbxl17,Fbxl17_Intron,17,63294235,63294284,63294283,63294284,50,+,CTTGAAATTCAGCAATCACATTTCTCACTGTTTCAGAATGACCTATTTCG,"Intron (Fbxl17-201/Fbxl17, intron 6 of 8)",17,63057452,63500017,442566,2,Fbxl17-201,205733,Fbxl17-201;Fbxl17-203;Fbxl17-204;Fbxl17-205,Fbxl17;Fbxl17;Fbxl17;Fbxl17,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,8,50758,ENSMUSG00000023965,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
227,cg06287583,-3.68E-08,0.000000307,-0.119799115,0.904719884,loss,ns,-0.000000426,0.000000522,-0.816673945,0.414741923,neg,ns,-0.000390109,0.000152996,-2.549790068,0.011259835,neg,ns,1.948467975,0.0000086,0.00000526,1.634755332,0.103115353,pos,ns,0.992739371,Gm21992,Gm21992_threeUTR,19,4801650,4801699,4801698,4801699,50,+,TTATAGGAGCCCGAATAGCGTGCGTAATCGGAATGGGCATCGGGCAGGCG,3' UTR,19,4742913,4811612,68700,2,Gm21992-203,9913,Gm21992-203;Gm21992-206;Gm21992-204;Gm21992-201;Gm21992-205;Gm21992-202;Rbm14-201;Rbm14-202;Rbm14-203,Gm21992;Gm21992;Gm21992;Gm21992;Gm21992;Gm21992;Rbm14;Rbm14;Rbm14,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,21,48,102902673,ENSMUSG00000096370,mapped to different genes,19,4801605,4801812,208,*,208,24,0.586538462,1.371428571,0.115384615,3.42E-20,CpGisland,TRUE,U10,Tr-S
11836,cg19830974,-0.0000121,0.00000358,-3.36760332,0.000853861,loss,ns,0.00000496,0.00000608,0.816602485,0.414782711,pos,ns,-0.005178437,0.00178109,-2.907454406,0.003906702,neg,ns,2.408189709,0.000102543,0.0000613,1.674135745,0.095112494,pos,ns,0.880052064,Pdgfrb,Pdgfrb_Exon,18,61073695,61073744,61073743,61073744,50,+,CCACCTGAACGTGGTCAACCTGTTGGGGGCCTGCACCAAAGGAGGTACCG,"Exon (Pdgfrb-201/Pdgfrb, exon 14 of 23)",18,61045150,61085061,39912,1,Pdgfrb-201,28545,Pdgfrb-201;Pdgfrb-202,Pdgfrb;Pdgfrb,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,18596,ENSMUSG00000024620,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
489,cg12671735,-0.00000279,0.00000184,-1.521123947,0.129248053,loss,ns,0.00000255,0.00000312,0.816563237,0.414805114,pos,ns,0.0016505,0.000913359,1.807065037,0.071721553,pos,ns,1.144350313,-0.00000363,0.0000314,-0.115653793,0.908001808,neg,ns,0.078064907,Epc1,Epc1_fiveUTR,18,6490811,6490860,6490859,6490860,50,+,TCTTCAATACGCCATGGCCAACATGGCGGACATTAAAACTCCACTGTGCG,Promoter (<=1kb),18,6435953,6490856,54904,2,Epc1-201,0,Epc1-203;Epc1-201;Epc1-202,Epc1;Epc1;Epc1,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,8,13831,ENSMUSG00000024240,conserved gene and region,18,6490174,6491299,1126,*,1126,149,0.703374778,1.070212481,0.132326821,4.64E-133,CpGisland,TRUE,U1,Pr-A
16594,cg15785105,0.0000054,0.0000129,0.416877301,0.677056677,gain,ns,-0.000018,0.000022,-0.816512119,0.414834293,neg,ns,-0.015104282,0.006443769,-2.344013543,0.019708725,neg,ns,1.705341474,0.000404384,0.000221601,1.824834041,0.068988365,pos,ns,0.209082655,Six3,Six3_Exon,17,85619333,85619382,85619381,85619382,50,+,AATTATTTCAGCTTTATTGAGGGCAGATTAGTTGAAGTCTGGGCGCTGCG,"Exon (Gm27427-201/Gm27427-201, exon 1 of 1)",17,85613608,85625222,11615,1,Six3-202,5725,Six3-202;Six3-203;Six3-201,Six3;Six3;Six3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,24,20473,ENSMUSG00000038805,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
13672,cg17567299,0.000045,0.0000147,3.061561253,0.002394637,gain,ns,0.0000204,0.0000249,0.816503349,0.414839299,pos,ns,0.011466502,0.007308287,1.568972534,0.117674465,pos,ns,0.929317766,0.000268632,0.000251331,1.068837183,0.285974607,pos,ns,0.424173391,Tcf12,Tcf12_Intron,9,71976222,71976271,71976222,71976223,50,-,CGTGTAGCAACACACCATTTCACAGTCTATCGGGCACAAACACATGGCCA,"Intron (Tcf12-202/Tcf12, intron 5 of 20)",9,71842688,72111847,269160,2,Tcf12-202,135576,Tcf12-202;Tcf12-201;Tcf12-220;Tcf12-221;Tcf12-218;Tcf12-216;Tcf12-208;Tcf12-210;Tcf12-214;Tcf12-205;Tcf12-203;Tcf12-211;Tcf12-204;Tcf12-212,Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,12,21406,ENSMUSG00000032228,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17177,cg13909487,0.000204692,0.0000172,11.91729626,3.28E-27,gain,yes,-0.0000238,0.0000292,-0.816470486,0.414858059,neg,ns,0.025879265,0.008548712,3.027270777,0.002674801,pos,ns,2.572708533,-0.000995928,0.000293989,-3.3876319,0.000795961,neg,ns,0.152308792,Sall1,Sall1_Intron,8,89042681,89042730,89042729,89042730,50,-,CTCGCCTTAATCAATTAGTTCGTGATTTGCTGCAGACCCCTGTCTCTCCG,"Intron (Sall1-201/Sall1, intron 1 of 3)",8,89027235,89044162,16928,2,Sall1-201,1432,Sall1-201,Sall1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,15,58198,ENSMUSG00000031665,conserved gene but different region,8,89042618,89043122,505,*,505,61,0.722772277,0.926076239,0.120792079,5.05E-52,CpGisland,TRUE,U1,Pr-A
19000,cg17842351,-0.00000115,0.00000219,-0.524396106,0.600377821,loss,ns,-0.00000303,0.00000372,-0.816418403,0.414887791,neg,ns,0.000131052,0.001088467,0.120400616,0.9042438,pos,ns,0.043714461,-0.00000108,0.0000374,-0.028885043,0.976974861,neg,ns,0.886988685,Med1,Med1_Exon,11,98157949,98157998,98157949,98157950,50,-,CGGAAGAGGAGTTCTGCCTTTCTAAAGGGCTGCTTCCATAAAGGGTTGAG,"Exon (Med1-203/Med1, exon 17 of 17)",11,98152154,98193260,41107,2,Med1-202,35262,Med1-202;Med1-203;Med1-204;Med1-201;Med1-207,Med1;Med1;Med1;Med1;Med1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,13,19014,ENSMUSG00000018160,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23257,cg02729610,-0.0000325,0.00000775,-4.191125747,0.0000362,loss,ns,0.0000107,0.0000132,0.816391202,0.41490332,pos,ns,-0.010439778,0.003856036,-2.707386167,0.007157664,neg,ns,2.145228667,0.0000492,0.000132609,0.370994253,0.710895211,pos,ns,0.803411476,Eri3,Eri3_Intron,4,117624712,117624761,117624712,117624713,50,-,CGAAATGATTCCAGATAATAGGGAGACAGATAATATATGCATGAAGGATA,"Intron (Eri3-201/Eri3, intron 7 of 8)",4,117550365,117674297,123933,1,Eri3-201,74347,Eri3-201;Eri3-206,Eri3;Eri3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,82,97,140546,ENSMUSG00000033423,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2061,cg25763390,-0.000000581,0.00000586,-0.099183982,0.921056298,loss,ns,0.00000812,0.00000995,0.816190042,0.415018169,pos,ns,0.00459878,0.002915606,1.577298086,0.115746827,pos,ns,0.936490906,-0.0000159,0.000100267,-0.158373699,0.874265456,neg,ns,0.085683893,Gm38154,Gm38154_Intron,3,17790954,17791003,17790954,17790955,50,-,CGCCAAGCGCTTTGTGCTTCACAAGGAGAAAATGGCGAGTCCTATTGTGT,"Intron (Mir124-2hg-204/Mir124-2hg-204, intron 1 of 2)",3,17670688,17671027,340,1,Gm38154-201,120315,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,15,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
3219,cg19098437,-0.00000513,0.00000798,-0.642867181,0.520785485,loss,ns,0.0000111,0.0000136,0.816157926,0.415036507,pos,ns,-0.004586684,0.003969708,-1.155420979,0.248807846,neg,ns,0.604135928,0.000245889,0.000136518,1.801147993,0.072651251,pos,ns,0.82064543,Gm20954,Gm20954_Exon,1,23272270,23272319,23272270,23272271,50,-,CGACTGTAAACATCCTCGACTGGAAGCTGTGAAGCCACAGATGGGCTTTC,"Exon (Mir30a-201/Mir30a-201, exon 1 of 1)",1,23345956,23346599,644,2,Gm20954-201,74329,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,100418001,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2039,cg10352195,-0.00000406,0.00000152,-2.669558208,0.007995303,loss,ns,-0.00000211,0.00000258,-0.816079391,0.415081351,neg,ns,0.001376311,0.00075613,1.820203527,0.069692201,pos,ns,1.156815819,-0.000053,0.000026,-2.039322535,0.042265601,neg,ns,0.97167554,Pcsk5,Pcsk5_Exon,19,17617704,17617753,17617704,17617705,50,+,CGGGAAGTCCTGACAATAACATGCTGTACGTCTCTCCAGGTCAGAAACGG,"Exon (Pcsk5-201/Pcsk5, exon 10 of 38)",19,17432319,17837632,405314,2,Pcsk5-201,219879,Pcsk5-201;Pcsk5-202;Pcsk5-204,Pcsk5;Pcsk5;Pcsk5,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,7,18552,ENSMUSG00000024713,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15643,cg13977827,0.0000329,0.0000094,3.495469264,0.000542262,gain,ns,-0.000013,0.000016,-0.815679927,0.415309496,neg,ns,0.020607859,0.004680315,4.403092564,0.0000147,pos,ns,4.832435337,-0.000661049,0.000160956,-4.107024465,0.0000513,neg,ns,0.519098369,Nfib,Nfib_Exon,4,82498397,82498446,82498445,82498446,50,-,CCATGACTAGATCCAGACGCCAGACTTTGTCTGCCTGTCGCAGGCAGTCG,"Exon (Nfib-201/Nfib, exon 2 of 12)",4,82290173,82505308,215136,2,Nfib-201,6862,Nfib-201;Nfib-203;Nfib-202;Nfib-205;Nfib-206;Nfib-204;Nfib-207;Nfib-209;Nfib-210;Nfib-208;Nfib-212;Nfib-211,Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,14,66,18028,ENSMUSG00000008575,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17041,cg14947731,-0.0000208,0.00000968,-2.146192926,0.03263359,loss,ns,-0.0000134,0.0000164,-0.815625807,0.415340411,neg,ns,-0.010659916,0.004817005,-2.212975957,0.027627512,neg,ns,1.558658227,0.000216328,0.000165656,1.305885215,0.192559802,pos,ns,0.818062792,Gm28877,Gm28877_Intergenic_upstream,9,88069073,88069122,88069121,88069122,50,+,TTGACTTTCTCTCCATAAGTTCTCCATTAACAGTTTCACAGCAGAAGGCG,Distal Intergenic,9,88039089,88039692,604,2,Gm28877-201,-29381,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,7,102639108,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26897,cg01072364,-0.00000529,0.00000142,-3.734185253,0.00022406,loss,ns,-0.00000196,0.00000241,-0.815544278,0.415386986,neg,ns,-0.000379275,0.000704624,-0.538265401,0.59078009,neg,ns,0.22857415,0.00000505,0.0000242,0.208597708,0.834899292,pos,ns,0.976047689,Prdm16,Prdm16_Intron,4,154492973,154493022,154492973,154492974,50,-,CGGCTGATTATTCATTGCTGACAGTTATTAGCCTATTATTAAACGTATGA,"Intron (Prdm16-201/Prdm16, intron 2 of 16)",4,154316125,154636866,320742,2,Prdm16-201,143844,Prdm16-201;Prdm16-202;Prdm16-203;Prdm16-204;Prdm16-205;Prdm16-206;Prdm16-210;Prdm16-207;Prdm16-209;Prdm16-212,Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,32,70673,ENSMUSG00000039410,conserved gene and region,4,154492854,154492974,121,*,121,10,0.578512397,1.00082713,0.082644628,0.000000392,CpGisland,TRUE,U11,Tr-P
21016,cg19945696,-0.00000123,0.0000031,-0.395628778,0.692651031,loss,ns,0.0000043,0.00000527,0.815485922,0.415420325,pos,ns,0.003463986,0.001545253,2.241695852,0.025688238,pos,ns,1.590265687,-0.000151262,0.0000531,-2.846430431,0.004716039,neg,ns,0.934455221,Dcdc5,Dcdc5_Intron,2,106074573,106074622,106074573,106074574,50,+,CGCCTTTAGATTCCATGCTGTTACAAGGCCAGCCCTGAACATGGCAACTC,"Intron (Dcdc5-203/Dcdc5, intron 6 of 8)",2,106003336,106157718,154383,1,Dcdc5-203,71237,Dcdc5-203;Dcdc5-202,Dcdc5;Dcdc5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,22,329482,ENSMUSG00000074981,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25070,cg04084821,-0.00000412,0.00000262,-1.570289034,0.117367979,loss,ns,-0.00000363,0.00000445,-0.815426701,0.415454159,neg,ns,-0.0000653,0.001304381,-0.050088834,0.960083855,neg,ns,0.017690834,0.0000105,0.0000449,0.23323464,0.815733137,pos,ns,0.928643817,Sesn2,Sesn2_Exon,4,132496879,132496928,132496927,132496928,50,-,GCTCACCTGATGCCAAAGACGCAGTGGATATAGTTCCAGATGGCCCTGCG,"Exon (Sesn2-201/Sesn2, exon 8 of 10)",4,132492032,132510501,18470,2,Sesn2-201,13573,Sesn2-201,Sesn2,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,230784,ENSMUSG00000028893,conserved gene and region,4,132496734,132496962,229,*,229,13,0.56768559,0.708809524,0.056768559,0.00000032,CpGisland,TRUE,U10,Tr-S
11330,cg10688664,-0.0000048,0.00000144,-3.339873217,0.000940522,loss,ns,0.00000199,0.00000244,0.815337441,0.415505159,pos,ns,-0.000963578,0.000715763,-1.346223607,0.179213978,neg,ns,0.746628119,0.0000393,0.0000246,1.595504234,0.111618445,pos,ns,0.047690146,Xpo4,Xpo4_fiveUTR,14,57664948,57664997,57664948,57664949,50,+,CGCCATCATGGTCTCTCTTCAATGACGCGCCATGCGCTGCATTCTGGGAG,Promoter (<=1kb),14,57582271,57664956,82686,2,Xpo4-201,0,Gm49361-201;Xpo4-209;Xpo4-201;Xpo4-208;Xpo4-203;Xpo4-207;Xpo4-205;Xpo4-202;Xpo4-206,Gm49361;Xpo4;Xpo4;Xpo4;Xpo4;Xpo4;Xpo4;Xpo4;Xpo4,0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,3,57258,ENSMUSG00000021952,conserved gene but different region,14,57664812,57665494,683,*,683,79,0.698389458,0.948611111,0.115666179,1.59E-65,CpGisland,TRUE,U1,Pr-A
9266,cg10439064,0.000000467,0.00000301,0.155013938,0.876911209,gain,ns,-0.00000417,0.00000512,-0.815287136,0.415533902,neg,ns,-0.000690293,0.001499438,-0.46036815,0.645574746,neg,ns,0.190053467,0.0000234,0.0000516,0.453515002,0.650495243,pos,ns,0.925597536,Foxp4,Foxp4_Intron,17,47872475,47872524,47872523,47872524,50,+,CTGGAGTGGAATCTCTTGGAGCGATAATTACAAAGGGCCTAATCACGCCG,"Intron (Foxp4-204/Foxp4, intron 13 of 16)",17,47867133,47924645,57513,2,Foxp4-204,52121,Foxp4-204;Foxp4-203;Foxp4-201;Foxp4-202,Foxp4;Foxp4;Foxp4;Foxp4,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,25,74123,ENSMUSG00000023991,conserved gene and region,17,47872440,47872721,282,*,282,26,0.563829787,1.163809524,0.092198582,3.73E-19,CpGisland,TRUE,U10,Tr-S
14957,cg16556111,-0.00000818,0.00000363,-2.252734305,0.024974981,loss,ns,-0.00000503,0.00000617,-0.815274388,0.415541186,neg,ns,-0.007032614,0.001808354,-3.888958501,0.000123208,neg,ns,3.909361877,0.000169369,0.0000622,2.723446485,0.006826624,pos,ns,0.070040924,Nr2f1,Nr2f1_Exon,13,78200441,78200490,78200489,78200490,50,-,TATTGAAACTGACACGTTTCTATGGAGATCGCTGCCTTATATGGAGCTCG,Promoter (<=1kb),13,78188973,78199757,10785,2,Nr2f1-201,-733,Nr2f1-201;Nr2f1-205;Nr2f1-203;Nr2f1-202;Nr2f1-206,Nr2f1;Nr2f1;Nr2f1;Nr2f1;Nr2f1,0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,25,55,13865,ENSMUSG00000069171,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
15464,cg09102690,-0.0000136,0.00000467,-2.913318172,0.003836024,loss,ns,0.00000647,0.00000793,0.814974144,0.41571277,pos,ns,-0.003395047,0.002324633,-1.46046567,0.145174862,neg,ns,0.838108579,0.0000417,0.0000799,0.521322049,0.602514662,pos,ns,0.812704765,Asic2,Asic2_Exon,11,80971476,80971525,80971524,80971525,50,+,AGATGGGCAGGTACTCATCCTGCTGAATGTCCAGCATGATCTCCAGCCCG,"Exon (Asic2-201/Asic2, exon 2 of 10)",11,80880169,81153321,273153,2,Asic2-201,181796,Asic2-201;Asic2-202,Asic2;Asic2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,10,11418,ENSMUSG00000020704,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14111,cg05847336,0.0000557,0.00000641,8.697623493,2.02E-16,gain,yes,-0.00000887,0.0000109,-0.814810493,0.415806311,neg,ns,0.009739603,0.003188742,3.054371706,0.002451039,pos,ns,2.610649802,-0.000231923,0.000109661,-2.114915748,0.035234834,neg,ns,0.109840548,Hoxd11,Hoxd11_Intron,2,74683308,74683357,74683308,74683309,50,-,CGTTGTAAAGTGTGTTTATGGTAGGAAACCAATTTAGGTGGGCTTAAGGT,"Intron (Hoxd11-201/Hoxd11, intron 1 of 1)",2,74679557,74687016,7460,1,Hoxd11-201,3751,Hoxd11-201;Hoxd11-202,Hoxd11;Hoxd11,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,14,15431,ENSMUSG00000042499,conserved gene and region,2,74682329,74683319,991,*,991,131,0.735620585,0.980225008,0.132189707,5.38E-117,CpGisland,TRUE,U13,Hc-P
23641,cg11985330,0.00000871,0.00000685,1.271463506,0.204516918,gain,ns,-0.00000948,0.0000116,-0.814788387,0.415818947,neg,ns,-0.008092601,0.003408081,-2.374532773,0.018179685,neg,ns,1.740413635,0.000190756,0.000117204,1.627556263,0.104634921,pos,ns,0.784460133,Acvr2b,Acvr2b_Exon,9,119427481,119427530,119427481,119427482,50,+,CGGGAGTGCATCTACTACAACGCCAACTGGGAGCTGGAGCGCACCAACCA,"Exon (Acvr2b-202/Acvr2b, exon 2 of 10)",9,119402118,119433515,31398,1,Acvr2b-202,25363,Acvr2b-202;Acvr2b-201;Acvr2b-205;Acvr2b-206;Acvr2b-203;Acvr2b-204,Acvr2b;Acvr2b;Acvr2b;Acvr2b;Acvr2b;Acvr2b,0;0;0;-2816;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,6,11481,ENSMUSG00000061393,conserved gene and region,9,119427391,119427613,223,*,223,19,0.650224215,0.806433194,0.085201794,1.84E-13,CpGisland,TRUE,U11,Tr-P
23918,cg17010745,0.0000348,0.00000833,4.173176066,0.0000391,gain,ns,-0.0000115,0.0000141,-0.814784947,0.415820914,neg,ns,0.011192421,0.004144887,2.700295528,0.007308373,pos,ns,2.136179278,-0.000168555,0.000142542,-1.182489466,0.237917705,neg,ns,0.177756357,Galnt2l,Galnt2l_Intron,8,121127499,121127548,121127499,121127500,50,-,CGTGATATTTCAAACATCAGATCAGTGCGTTTATATATTGGGTGCCCGGA,"Intron (Galnt2l-201/Galnt2l, intron 1 of 15)",8,119910841,124345722,4434882,1,Galnt2l-201,1216658,Foxl1-201;Galnt2l-201,Foxl1;Galnt2l,-392;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,28,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
16080,cg12346044,0.0000909,0.0000225,4.044081861,0.0000663,gain,ns,-0.0000311,0.0000382,-0.814743331,0.415844703,neg,ns,0.020581738,0.011181368,1.840717281,0.06661857,pos,ns,1.176404694,-0.00040481,0.000384526,-1.052750023,0.293275455,neg,ns,0.402258088,Thada,Thada_Intron,17,84366213,84366262,84366261,84366262,50,-,AAAGTGCTTCTAAAGCAGAAAGCATTCAACTACCGTATTTATATAGGGCG,"Intron (Thada-201/Thada, intron 26 of 37)",17,84190076,84466116,276041,2,Thada-201,99854,Thada-201;Thada-205;Thada-206,Thada;Thada;Thada,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,3,240174,ENSMUSG00000024251,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9677,cg13447705,0.0000219,0.00000377,5.809623163,1.55E-08,gain,yes,0.00000522,0.00000641,0.81472468,0.415855366,pos,ns,0.008455581,0.001876907,4.505061472,0.00000941,pos,ns,5.026350436,-0.00021182,0.0000645,-3.28165373,0.001149749,neg,ns,0.060894844,Slc6a5,Slc6a5_Exon,7,49914795,49914844,49914843,49914844,50,+,AGTGGGGCTGGGCAATGTCTGGAGGTTTCCCTACCTGGCCTTCCAGAACG,"Exon (Slc6a5-201/Slc6a5, exon 3 of 16)",7,49910146,49963856,53711,1,Slc6a5-201,4649,Slc6a5-201;Slc6a5-204;Slc6a5-203;Slc6a5-202,Slc6a5;Slc6a5;Slc6a5;Slc6a5,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,5,104245,ENSMUSG00000039728,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
17682,cg11246071,8.02E-08,0.0000144,0.005587761,0.995545229,gain,ns,0.0000199,0.0000244,0.81468164,0.415879971,pos,ns,-0.005053709,0.007146045,-0.70720362,0.479971228,neg,ns,0.318784796,0.000448512,0.000245752,1.825061496,0.068953944,pos,ns,0.233889168,Elavl2,Elavl2_fiveUTR,4,91376197,91376246,91376197,91376198,50,+,CGTTCAACTAAACAAAAAGGGGCAAGAAAAACAAACCAAGGAACAAAGAA,Promoter (<=1kb),4,91250763,91376463,125701,2,Elavl2-208,217,Elavl2-204;Elavl2-201;Elavl2-207;Elavl2-208;Elavl2-202;Elavl2-209;Elavl2-203;Elavl2-205;Elavl2-215;Elavl2-212;Elavl2-214;Elavl2-211,Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,8,31,15569,ENSMUSG00000008489,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
6400,cg27397465,0.00000955,0.00000127,7.50601654,6.52E-13,gain,yes,-0.00000176,0.00000216,-0.814661271,0.415891615,neg,ns,0.001076761,0.000633086,1.700814319,0.08998068,pos,ns,1.045850727,-0.0000215,0.0000218,-0.989679006,0.323102874,neg,ns,0.037536632,Marcks,Marcks_fiveUTR,10,37138896,37138945,37138944,37138945,50,+,TAATAAGATGCGGGGTCCAACGCCCAAGTGCACAGATGAATGGGCTCGCG,Promoter (<=1kb),10,37133375,37138920,5546,2,Marcks-201,0,Marcks-201,Marcks,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,8,17118,ENSMUSG00000069662,conserved gene but different region,10,37138906,37139051,146,*,146,22,0.726027397,1.143874644,0.150684932,1.99E-21,CpGisland,TRUE,NA,NRS
15779,cg09625387,-8.34E-09,0.00000176,-0.004730443,0.996228709,loss,ns,-0.00000244,0.00000299,-0.814654085,0.415895724,neg,ns,0.000949043,0.000877003,1.082143639,0.280029747,pos,ns,0.552795833,-0.0000502,0.0000302,-1.66485788,0.096951421,neg,ns,0.967918032,Tet3,Tet3_Exon,6,83368334,83368383,83368382,83368383,50,+,AGGTTCTTGTGCTGGTAGAAGACCAGCGAGATGCGGGTGGGGTGGCAGCG,"Exon (Tet3-202/Tet3, exon 11 of 11)",6,83362373,83441675,79303,2,Tet3-202,73292,Tet3-202;Tet3-203,Tet3;Tet3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,8,194388,ENSMUSG00000034832,conserved gene and region,6,83368360,83368528,169,*,169,11,0.621301775,0.692622951,0.065088757,0.000000917,CpGisland,TRUE,U10,Tr-S
23862,cg01682788,0.000149354,0.0000127,11.75178138,1.28E-26,gain,yes,-0.0000176,0.0000216,-0.814611946,0.415919815,neg,ns,-0.001057609,0.006325441,-0.167199313,0.867322238,neg,ns,0.061819518,0.000264654,0.000217531,1.216625293,0.224672289,pos,ns,0.470102532,En1,En1_threeUTR,1,120607920,120607969,120607920,120607921,50,+,CGCTACAAGCCAAAGATTTTATTATGTTCAGAAACCTGTAGTCTGAAATA,3' UTR,1,120602418,120607992,5575,1,En1-201,5502,En1-201,En1,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,36,13798,ENSMUSG00000058665,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
15488,cg07196802,0.0000761,0.00000682,11.14985319,1.68E-24,gain,yes,-0.00000944,0.0000116,-0.814529567,0.415966914,neg,ns,0.008268739,0.003396527,2.434469017,0.015477783,pos,ns,1.810291236,-0.000112591,0.000116806,-0.963912098,0.335841305,neg,ns,0.096856195,Asic2,Asic2_Exon,11,81151805,81151854,81151853,81151854,50,-,AGAGCAGCATGTCCTCCAGCTGGTGGCCCAGGCGGTCCATGAAGGCGGCG,"Exon (Asic2-201/Asic2, exon 1 of 10)",11,80880169,81153321,273153,2,Asic2-201,1467,Asic2-201;Asic2-202,Asic2;Asic2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,10,11418,ENSMUSG00000020704,conserved gene and region,11,81151837,81152684,848,*,848,111,0.739386793,0.95779234,0.130896226,1.13E-98,CpGisland,TRUE,NA,NRS
26511,cg09537576,0.0000449,0.00000976,4.599518726,0.00000618,gain,ns,-0.0000135,0.0000166,-0.814468398,0.416001888,neg,ns,0.004574857,0.004858156,0.941685816,0.347086762,pos,ns,0.45956195,0.000418296,0.000167072,2.503695382,0.012804153,pos,ns,0.594514415,Casz1,Casz1_Intron,4,148860149,148860198,148860197,148860198,50,-,ATTTGAGATGTAATTAACCCGTCGCCATGACAACTAATTTTGTGATGCCG,"Intron (Casz1-201/Casz1, intron 2 of 15)",4,148804429,148945129,140701,1,Casz1-201,55720,Casz1-201;Casz1-202,Casz1;Casz1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,94,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
20641,cg19927028,-0.00000385,0.0000016,-2.410284386,0.016522063,loss,ns,-0.00000221,0.00000271,-0.814296917,0.416099946,neg,ns,-0.000797121,0.00079402,-1.00390497,0.31620738,neg,ns,0.500027999,-0.0000198,0.0000273,-0.725544025,0.468665705,neg,ns,0.052889007,Adamts6,Adamts6_Promoter,13,104286915,104286964,104286963,104286964,50,-,AAGTTGACATTGTCTAAGCCCTTCTGAATGGCTGGTAGTTGGTTACCCCG,Promoter (<=1kb),13,104287835,104496695,208861,1,Adamts6-207,-920,Adamts6-207;Adamts6-202;Adamts6-201;Adamts6-206,Adamts6;Adamts6;Adamts6;Adamts6,0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,6,31,108154,ENSMUSG00000046169,conserved gene and region,13,104286963,104287052,90,*,90,8,0.633333333,0.997229917,0.088888889,0.00000534,CpGisland,TRUE,U1,Pr-A
26050,cg20764264,-0.00000712,0.00000331,-2.152057249,0.032164722,loss,ns,0.00000458,0.00000562,0.814286238,0.416106053,pos,ns,-0.00257053,0.00164647,-1.561237503,0.11948798,neg,ns,0.922675781,0.000000571,0.0000566,0.010083393,0.991961239,pos,ns,0.924971579,Gm2505,Gm2505_Intergenic_upstream,3,143434259,143434308,143434259,143434260,50,+,CGGTGTGTCTACTTGAATATTCAAAAAGTCATCAGCTAGTCTAATTTGTT,Distal Intergenic,3,143872995,143873819,825,1,Gm2505-201,-438687,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,37,100039938,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9583,cg25167058,0.0000217,0.00000294,7.385745779,1.41E-12,gain,yes,-0.00000407,0.000005,-0.814191578,0.416160188,neg,ns,0.003499948,0.001465472,2.388273966,0.01752601,pos,ns,1.756316938,0.00000164,0.0000504,0.032583698,0.974027539,pos,ns,0.037218383,Gm43517,Gm43517_Intron,12,49395077,49395126,49395077,49395078,50,+,CGAAAACACTCGACAGGTCGTGAATAATCGTTTTAATGAGTGTGCAAAGC,"Intron (3110039M20Rik-201/3110039M20Rik-201, intron 2 of 2)",12,49385174,49394127,8954,1,Gm43517-201,9903,Gm43517-201,Gm43517,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,5,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
167,cg19063085,0.0000036,0.00000494,0.728151274,0.467070635,gain,ns,-0.00000683,0.00000839,-0.814169132,0.416173025,neg,ns,-0.002229215,0.00245731,-0.907177083,0.365017785,neg,ns,0.437685975,0.00000103,0.0000845,0.012222942,0.990255609,pos,ns,0.463198519,Gria4,Gria4_Exon,9,4456158,4456207,4456158,4456159,50,+,CGAGCTACTCCCTCAGCTGTAGTCCTAGTGAATACTGATGGCTCTGCTGA,"Exon (Gria4-202/Gria4, exon 14 of 17)",9,4417896,4796142,378247,2,Gria4-202,339935,Gria4-202;Gria4-204;Gria4-201,Gria4;Gria4;Gria4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,16,18,14802,ENSMUSG00000025892,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20401,cg24176069,0.0000306,0.00000515,5.945630895,7.42E-09,gain,yes,-0.00000712,0.00000875,-0.814112894,0.41620519,neg,ns,0.003830365,0.002563896,1.493962411,0.13620258,pos,ns,0.865814665,-0.000102239,0.0000882,-1.159534419,0.247130737,neg,ns,0.058001336,Hoxc4,Hoxc4_Intron,15,103032736,103032785,103032736,103032737,50,-,CGGCGAATTAAAGGTAGATTGACTAATCACGGCGGCGATCATAATAATAA,"Intron (Hoxc4-202/Hoxc4, intron 1 of 3)",15,103018934,103036405,17472,1,Hoxc4-202,13802,Hoxc4-202;Hoxc4-201,Hoxc4;Hoxc4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,91,15423,ENSMUSG00000075394,conserved gene and region,15,103032736,103032961,226,*,226,19,0.517699115,1.262198707,0.084070797,2.37E-13,CpGisland,TRUE,U13,Hc-P
11848,cg12822281,0.00000175,0.00000114,1.533827646,0.126091968,gain,ns,0.00000158,0.00000194,0.814064704,0.416232753,pos,ns,0.000730679,0.000569073,1.283981186,0.200107349,pos,ns,0.698736961,-0.0000141,0.0000196,-0.719937045,0.472106198,neg,ns,0.96953998,Hmgxb3,Hmgxb3_threeUTR,18,61147243,61147292,61147291,61147292,50,+,TTACTTTTGTCCCCCTTTGAATAATGGGCTGCTACAGAGAAGGCACTGCG,3' UTR,18,61131277,61177050,45774,2,Hmgxb3-201,29758,Hmgxb3-201;Hmgxb3-202;Hmgxb3-203;Hmgxb3-205;Hmgxb3-207,Hmgxb3;Hmgxb3;Hmgxb3;Hmgxb3;Hmgxb3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,3,106894,ENSMUSG00000024622,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
940,cg02201246,-0.00000458,0.00000381,-1.203502311,0.229700232,loss,ns,0.00000527,0.00000647,0.813901937,0.416325857,pos,ns,-0.002125358,0.001895902,-1.121027347,0.263143877,neg,ns,0.579806731,0.0000199,0.0000652,0.304907735,0.76064103,pos,ns,0.469734317,Gata3,Gata3_Promoter,2,9893023,9893072,9893023,9893024,50,+,CGCTGCTCTTTAATTAGTGTGTCAATTTCAGGCTGAAATTAACAAGATCG,Promoter (2-3kb),2,9874702,9890034,15333,2,Gata3-202,-2989,9230102O04Rik-202;Gata3-202;Gata3-203,9230102O04Rik;Gata3;Gata3,-3483;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,12,21,14462,ENSMUSG00000015619,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
2227,cg19947881,-0.0000164,0.00000411,-3.99866701,0.0000797,loss,ns,-0.00000568,0.00000698,-0.813808827,0.416379123,neg,ns,-0.003121531,0.00204629,-1.525458651,0.128164289,neg,ns,0.892232968,0.00000639,0.0000704,0.090788652,0.927719161,pos,ns,0.944618282,Gm30341,Gm30341_Intergenic_upstream,3,18714043,18714092,18714043,18714044,50,+,CGATCAGCAGTAAGGATTTTGAAGCTGTTTTAGTAGTTCCGCTATTCTGC,Distal Intergenic,3,18753077,18753365,289,1,Gm30341-201,-38985,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,17,23,102632201,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23317,cg15485474,-0.00000531,0.00000218,-2.433643458,0.015512445,loss,ns,0.00000302,0.00000371,0.813802058,0.416382995,pos,ns,0.000112356,0.00108638,0.103422288,0.917694697,pos,ns,0.037301778,0.00000931,0.0000374,0.249195802,0.803374353,pos,ns,0.956826647,Tnrc6c,Tnrc6c_Exon,11,117755465,117755514,117755465,117755466,50,+,CGTGCCAAATCTGACAGTGATAAAATCTCAAATGGCTCTAGCATCAACTG,"Exon (Tnrc6c-201/Tnrc6c, exon 17 of 22)",11,117654289,117763437,109149,1,Tnrc6c-201,101176,Tnrc6c-201;Tnrc6c-205;Tnrc6c-202;Tnrc6c-203;Tnrc6c-206,Tnrc6c;Tnrc6c;Tnrc6c;Tnrc6c;Tnrc6c,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,217351,ENSMUSG00000025571,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20705,cg26740540,0.000000235,0.00000198,0.118824177,0.905491614,gain,ns,-0.00000274,0.00000336,-0.813631624,0.416480507,neg,ns,0.000238282,0.000984824,0.241953426,0.80897623,pos,ns,0.092064239,-0.0000204,0.0000339,-0.60321667,0.546805633,neg,ns,0.951204716,Cdc27,Cdc27_Exon,11,104522776,104522825,104522776,104522777,50,-,CGTTTGGGGGAGATGTAATAGTGGGGCTCAATACCTGAGGTGTTGTACTA,"Exon (Cdc27-201/Cdc27, exon 10 of 19)",11,104502745,104550483,47739,2,Cdc27-201,27658,Cdc27-201;Cdc27-203;Cdc27-202,Cdc27;Cdc27;Cdc27,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,217232,ENSMUSG00000020687,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26930,cg21197642,-0.0000243,0.0000219,-1.109369373,0.268130717,loss,ns,0.0000303,0.0000372,0.813622045,0.416485988,pos,ns,0.045636528,0.010900284,4.1867282,0.0000369,pos,ns,4.432781344,-0.001134074,0.00037486,-3.025328901,0.002691533,neg,ns,0.580606297,Ttc34,Ttc34_Intergenic_upstream,4,154771739,154771788,154771787,154771788,50,-,ACAAATTAAGTACAATTAAGGACTCTGAGTTATGGGTATCTATCACTCCG,Distal Intergenic,4,154837459,154867125,29667,1,Ttc34-203,-65720,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,6,242800,ENSMUSG00000046637,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14051,cg16296826,0.0000126,0.00000229,5.513239448,7.43E-08,gain,yes,-0.00000316,0.00000388,-0.813390998,0.4166182,neg,ns,-0.00018598,0.001137559,-0.16349014,0.870239068,neg,ns,0.060361423,0.0000502,0.0000391,1.28431439,0.199990933,pos,ns,0.050002617,Adgrb1,Adgrb1_fiveUTR,15,74516151,74516200,74516151,74516152,50,-,CGCTCCCCCTCTAATGTGTGATCTGGAAGCTCTATAAAGCCTGATGTAAT,Promoter (<=1kb),15,74516195,74589464,73270,1,Adgrb1-201,0,Adgrb1-201;Adgrb1-205;Adgrb1-206,Adgrb1;Adgrb1;Adgrb1,0;-238;-631,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,5,107831,ENSMUSG00000034730,conserved gene but different region,15,74516054,74516152,99,*,99,12,0.717171717,1,0.121212121,1.69E-10,CpGisland,TRUE,U13,Hc-P
17325,cg27360245,0.0000545,0.0000114,4.775171666,0.00000277,gain,ns,-0.0000158,0.0000194,-0.813296183,0.416672464,neg,ns,0.016613476,0.005681097,2.924343023,0.00370629,pos,ns,2.431060625,-0.000459365,0.000195372,-2.351228652,0.019337399,neg,ns,0.520953763,Agap1,Agap1_Intron,1,89714196,89714245,89714196,89714197,50,+,CGCTTTGAAGCCTGTGCTGTGCGATTTTCTCAGCAGTGAGGTAGGAATAG,"Intron (Agap1-201/Agap1, intron 9 of 17)",1,89454806,89897617,442812,1,Agap1-201,259390,Agap1-201;Agap1-204;Agap1-202,Agap1;Agap1;Agap1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,29,347722,ENSMUSG00000055013,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4346,cg01500797,0.0000664,0.000011,6.024324878,4.81E-09,gain,yes,0.0000152,0.0000187,0.813242623,0.416703119,pos,ns,0.008766812,0.005485314,1.598233464,0.111009759,pos,ns,0.954638839,-0.0000606,0.000188639,-0.321236089,0.748247954,neg,ns,0.090728147,Fgf12,Fgf12_Exon,16,28445132,28445181,28445180,28445181,50,-,GTTGGACTCCCTCGCCTGCCGCTTCTGCCGGATCAAGGAGCTGGCTATCG,"Exon (Fgf12-201/Fgf12, exon 1 of 5)",16,28160098,28446277,286180,2,Fgf12-201,1096,Fgf12-201;Fgf12-205;Fgf12-202;Fgf12-204,Fgf12;Fgf12;Fgf12;Fgf12,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,5,14167,ENSMUSG00000022523,conserved gene and region,16,28445001,28445337,337,*,337,30,0.679525223,0.772345302,0.089020772,1.48E-21,CpGisland,TRUE,U13,Hc-P
14214,cg16830078,-0.000000705,0.00000135,-0.523603624,0.600928362,loss,ns,0.00000186,0.00000229,0.813229423,0.416710674,pos,ns,0.001225328,0.00067012,1.828520159,0.068432281,pos,ns,1.164738986,-0.0000116,0.000023,-0.503801519,0.614758691,neg,ns,0.033890348,Mnt,Mnt_Intron,11,74831991,74832040,74831991,74831992,50,+,CGGCCTTTGCAGAATGAAATGACATCGCGTGTCTTATGATCCTGGCCAGC,"Intron (Mnt-201/Mnt, intron 1 of 5)",11,74830920,74845725,14806,1,Mnt-201,1071,Mettl16-205;Mnt-201;Mnt-203,Mettl16;Mnt;Mnt,61161;0;-4286,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,17,17428,ENSMUSG00000000282,conserved gene and region,11,74831764,74832137,374,*,374,30,0.628342246,0.846536895,0.080213904,3.52E-20,CpGisland,TRUE,U1,Pr-A
11651,cg09469446,-0.0000336,0.00000893,-3.755969373,0.000206216,loss,ns,0.0000123,0.0000152,0.813137553,0.416763259,pos,ns,-0.003239762,0.004445782,-0.728727281,0.466718653,neg,ns,0.330944842,0.0000379,0.00015289,0.247978575,0.804315161,pos,ns,0.846507277,Gm18161,Gm18161_Intergenic_downstream,19,59630900,59630949,59630948,59630949,50,-,TAAATAACTCCTCACAATTTCTTAAAGAAATGATCTTCAAAGCTTTAACG,Distal Intergenic,19,59540451,59540978,528,1,Gm18161-201,90498,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,8,100416590,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7541,cg15383435,0.0000135,0.00000552,2.441312636,0.015193077,gain,ns,-0.00000763,0.00000938,-0.813137259,0.416763427,neg,ns,0.004312978,0.002749117,1.568859528,0.117700803,pos,ns,0.929220574,-0.000317488,0.0000945,-3.358170039,0.00088247,neg,ns,0.083788323,Gm5554,Gm5554_Intergenic_upstream,5,43094558,43094607,43094606,43094607,50,+,GCCCTACTATCACCTGCTTTGGCCTGACAGATTATGCCATCTGGGCCACG,Distal Intergenic,5,42963404,42964609,1206,2,Gm5554-201,-129949,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,433883,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20766,cg16947830,-0.0000125,0.00000316,-3.969531797,0.0000896,loss,ns,0.00000436,0.00000536,0.813006504,0.416838276,pos,ns,-0.002983838,0.001570608,-1.899798776,0.058387383,neg,ns,1.233680987,0.0000532,0.000054,0.985837605,0.324981614,pos,ns,0.94539826,Gm5671,Gm5671_Intergenic_downstream,14,105070560,105070609,105070608,105070609,50,-,CCCAGAATAAATCTACCTTATTAAATGCTTGAAATTATGTGTCTTTTACG,Distal Intergenic,14,105043450,105044354,905,1,Gm5671-201,27159,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,12,435420,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24521,cg27269484,-0.0000233,0.00000335,-6.947573371,2.19E-11,loss,yes,0.00000463,0.00000569,0.812957826,0.416866144,pos,ns,0.008573463,0.001667533,5.141404343,0.000000484,pos,ns,6.315173906,-0.000255962,0.0000573,-4.463444564,0.0000113,neg,ns,0.073752777,Camk2d,Camk2d_Exon,3,126771787,126771836,126771835,126771836,50,-,CAGATCCTGGAGGCTGTGCTACACTGCCATCAGATGGGCGTGGTCCATCG,"Exon (Camk2d-203/Camk2d, exon 6 of 20)",3,126596951,126844913,247963,1,Camk2d-206,174836,Camk2d-206;Camk2d-203;Camk2d-202;Camk2d-216;Camk2d-226;Camk2d-215;Camk2d-210;Camk2d-219;Camk2d-213;Camk2d-209;Camk2d-204;Camk2d-228;Camk2d-221;Camk2d-207;Camk2d-205,Camk2d;Camk2d;Camk2d;Camk2d;Camk2d;Camk2d;Camk2d;Camk2d;Camk2d;Camk2d;Camk2d;Camk2d;Camk2d;Camk2d;Camk2d,0;0;0;0;0;174778;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,4,108058,ENSMUSG00000053819,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21038,cg13510732,-0.00000468,0.00000612,-0.764404708,0.445207559,loss,ns,0.00000845,0.0000104,0.81280799,0.416951928,pos,ns,0.001946129,0.003045685,0.638979253,0.523308262,pos,ns,0.281242408,-0.0000914,0.000104741,-0.872258476,0.383742461,neg,ns,0.882016915,Dcdc5,Dcdc5_Intron,2,106133719,106133768,106133719,106133720,50,+,CGTTTGATTTCTCCCAGTGTTTAGTGCTAATAACCTGTAGGGCCTCTTTT,"Intron (Dcdc5-203/Dcdc5, intron 8 of 8)",2,106003336,106157718,154383,1,Dcdc5-203,130383,Dcdc5-203;Dcdc5-202,Dcdc5;Dcdc5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,22,329482,ENSMUSG00000074981,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10843,cg13081277,-0.0000263,0.0000102,-2.571087937,0.010604165,loss,ns,0.0000141,0.0000173,0.812759382,0.41697976,pos,ns,0.007546228,0.005082372,1.484784667,0.138616992,pos,ns,0.858183531,-0.000279497,0.000174782,-1.599112888,0.110814188,neg,ns,0.794039692,Vti1a,Vti1a_threeUTR,19,55626728,55626777,55626776,55626777,50,+,CTGAGCCCTGAGCTTCAAAGGCTGAAATTAATGGTGAACAAAATTGTGCG,3' UTR,19,55316350,55627309,310960,1,Vti1a-202,310378,Vti1a-202;Vti1a-201,Vti1a;Vti1a,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,8,32,53611,ENSMUSG00000024983,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24251,cg12189585,0.0000554,0.00000968,5.722415272,2.48E-08,gain,yes,-0.0000134,0.0000164,-0.812710782,0.417007588,neg,ns,0.008584249,0.004815418,1.782658998,0.07562034,pos,ns,1.121361373,-0.000263244,0.000165602,-1.589617004,0.112940451,neg,ns,0.35068647,Pou3f1,Pou3f1_Intron,4,124310912,124310961,124310912,124310913,50,+,CGCCATCACTAAGGTGGGCTGTCACTTTAATCCCAGCCATTCACTTAGGC,"Intron (1700021L23Rik-201/1700021L23Rik-201, intron 1 of 1)",4,124656807,124660655,3849,1,Pou3f1-201,-345846,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,43,85,18991,ENSMUSG00000090125,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26188,cg21674021,-0.0000276,0.00000505,-5.47326687,9.13E-08,loss,yes,-0.00000697,0.00000858,-0.812645749,0.417044827,neg,ns,-0.006682903,0.002514013,-2.658260729,0.008262035,neg,ns,2.082912948,0.000188939,0.0000865,2.185353891,0.02961109,pos,ns,0.905903598,Gm5857,Gm5857_Intergenic_downstream,3,144319649,144319698,144319649,144319650,50,-,CGTTTCCAAAGAAAGACACCATATAAAAAGCATTCTGATTGCTAACAGTC,Distal Intergenic,3,144427180,144427672,493,2,Gm5857-201,108023,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,9,545572,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19413,cg26703664,-0.0000128,0.00000373,-3.436985157,0.000668541,loss,ns,0.00000514,0.00000633,0.812602098,0.417069824,pos,ns,0.000687973,0.001854743,0.3709262,0.710945849,pos,ns,0.148163477,-0.0000902,0.0000638,-1.414268737,0.158286552,neg,ns,0.052134613,Dusp6,Dusp6_fiveUTR,10,99263202,99263251,99263250,99263251,50,-,ATGTATCCATTGAGACGCTCGCTGTTTGTATCCATTGAGGAGCTGCCTCG,Promoter (<=1kb),10,99263231,99267488,4258,1,Dusp6-201,0,Dusp6-201;Dusp6-204;Dusp6-202;Dusp6-203,Dusp6;Dusp6;Dusp6;Dusp6,0;0;0;-2390,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,8,67603,ENSMUSG00000019960,conserved gene and region,10,99263144,99263272,129,*,129,11,0.627906977,0.866300366,0.085271318,5.89E-08,CpGisland,TRUE,U1,Pr-A
12879,cg25649680,0.0000378,0.00000429,8.802661945,9.58E-17,gain,yes,-0.00000592,0.00000729,-0.812531676,0.417110152,neg,ns,0.003620574,0.002135747,1.695225958,0.091036681,pos,ns,1.040783585,-0.0000877,0.0000734,-1.194380539,0.233242211,neg,ns,0.064795586,Cadm2,Cadm2_Promoter,16,67621035,67621084,67621035,67621036,50,-,CGGGAAAAACAAACAGGCTTCTCAAGGACCCTTCGGGCAGGAAGAACTGA,Promoter (<=1kb),16,66655421,67620908,965488,2,Cadm2-201,-176,Cadm2-201;Cadm2-202;Cadm2-203;Cadm2-204,Cadm2;Cadm2;Cadm2;Cadm2,0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,9,239857,ENSMUSG00000064115,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
16207,cg07577508,0.0000113,0.00000822,1.369000035,0.171990356,gain,ns,-0.0000114,0.000014,-0.812452933,0.417155248,neg,ns,0.00396143,0.004093313,0.967780882,0.333908232,pos,ns,0.476372873,-0.000172848,0.000140769,-1.227888215,0.220420434,neg,ns,0.181347878,Vsx2,Vsx2_Intron,12,84590091,84590140,84590139,84590140,50,+,GAAATCAAATTCTTCGCCGTATAAAAAGATAAATTACCCAGGCGCTGCCG,"Intron (Vsx2-201/Vsx2, intron 3 of 4)",12,84569762,84595457,25696,1,Vsx2-201,20329,Vsx2-201;Vsx2-202,Vsx2;Vsx2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,20,12677,ENSMUSG00000021239,conserved gene and region,12,84590042,84590334,293,*,293,26,0.56996587,1.09265634,0.088737201,1.04E-18,CpGisland,TRUE,U2,Pr-W
15314,cg00439445,-0.000014,0.00000369,-3.801385182,0.000173236,loss,ns,-0.00000509,0.00000627,-0.812439388,0.417163006,neg,ns,-0.004140228,0.001836947,-2.253863771,0.024902981,neg,ns,1.603748656,-0.00000513,0.0000632,-0.081226681,0.935314097,neg,ns,0.900172252,Vps33b,Vps33b_threeUTR,7,80286032,80286081,80286032,80286033,50,+,CGCCTCATGTGCCTTTTGTCCATCACTGAGAATGGTGAGCCCAAAAGACT,3' UTR,7,80269649,80291579,21931,1,Vps33b-201,16383,Vps33b-201;Vps33b-206;Vps33b-202;Vps33b-203;Vps33b-205;Vps33b-207;Vps33b-204,Vps33b;Vps33b;Vps33b;Vps33b;Vps33b;Vps33b;Vps33b,0;0;16298;0;11738;-3927;-3975,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,1,233405,ENSMUSG00000030534,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17400,cg18231301,0.0000189,0.000011,1.719525936,0.086516785,gain,ns,0.0000152,0.0000187,0.812225792,0.41728535,pos,ns,0.030950449,0.005468899,5.659356127,3.46E-08,pos,ns,7.460948766,-0.000628324,0.000188075,-3.340817217,0.000937442,neg,ns,0.754110554,Tpm3,Tpm3_Exon,3,90091053,90091102,90091053,90091054,50,+,CGAGGAGCTGGACCACGCCCTCAATGACATGACCTCTATGTAACTATCTG,"Exon (Tpm3-205/Tpm3, exon 9 of 10)",3,90072649,90092130,19482,1,Tpm3-205,18404,Tpm3-205;Tpm3-204;Tpm3-201;Tpm3-202;Tpm3-212;Tpm3-207;Tpm3-203;Tpm3-214;Tpm3-206;Tpm3-213;Tpm3-208;Tpm3-216;Tpm3-209;Tpm3-215;Tpm3-211;Tpm3-210,Tpm3;Tpm3;Tpm3;Tpm3;Tpm3;Tpm3;Tpm3;Tpm3;Tpm3;Tpm3;Tpm3;Tpm3;Tpm3;Tpm3;Tpm3;Tpm3,0;0;0;0;11388;0;0;0;10611;4682;0;3614;3597;0;1422;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,6,59069,ENSMUSG00000027940,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9575,cg26683318,0.0000271,0.00000298,9.112650753,1.03E-17,gain,yes,-0.00000411,0.00000506,-0.812153473,0.417326778,neg,ns,0.004786189,0.001482344,3.228797795,0.001376368,pos,ns,2.861265334,-0.0000563,0.000051,-1.103678048,0.270588803,neg,ns,0.026133097,Foxg1,Foxg1_Exon,12,49385332,49385381,49385332,49385333,50,+,CGCCTCACCTCCACCGGCCTCACCTTCATGGACCGCGCCGGCTCCCTCTA,"Exon (Foxg1-204/Foxg1, exon 1 of 1)",12,49382883,49386855,3973,1,Foxg1-204,2449,Foxg1-202;Foxg1-203;Foxg1-204;Foxg1-201;Gm43517-201,Foxg1;Foxg1;Foxg1;Foxg1;Gm43517,0;2532;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,27,15228,ENSMUSG00000020950,conserved gene and region,12,49385116,49385808,693,*,693,72,0.670995671,0.980968858,0.103896104,4.68E-56,CpGisland,TRUE,U13,Hc-P
11782,cg26741512,0.000000528,0.00000154,0.342260175,0.732387032,gain,ns,0.00000213,0.00000262,0.812153413,0.417326812,pos,ns,0.001569987,0.000768531,2.042842106,0.041913581,pos,ns,1.377645231,-0.0000581,0.0000264,-2.199105008,0.028608726,neg,ns,0.963443778,Mbnl1,Mbnl1_Intron,3,60614490,60614539,60614538,60614539,50,+,GCCTTTATTGTGCATGCTTAGTCTTGTTATTCGTTGTATATGGCATTCCG,"Intron (Mbnl1-216/Mbnl1, intron 4 of 6)",3,60473074,60621458,148385,1,Mbnl1-216,141416,Mbnl1-216;Mbnl1-211;Mbnl1-201;Mbnl1-202;Mbnl1-203;Mbnl1-218;Mbnl1-219;Mbnl1-214;Mbnl1-207;Mbnl1-205;Mbnl1-212;Mbnl1-210;Mbnl1-215;Mbnl1-223;Mbnl1-206,Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1,0;0;0;0;0;0;0;0;0;0;0;18849;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,36,56758,ENSMUSG00000027763,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1458,cg09666298,-0.0000694,0.0000105,-6.582997035,1.97E-10,loss,yes,0.0000145,0.0000179,0.812061469,0.417379486,pos,ns,-0.016295786,0.005244125,-3.107436746,0.002061966,neg,ns,2.685718556,0.000345549,0.000180345,1.916046317,0.05627872,pos,ns,0.638063488,Gm48201,Gm48201_Exon,12,13049746,13049795,13049746,13049747,50,-,CGTCCTTCCTGGAGGTACCCTCTGAAGTTCCTGGCGAGGAAGTTCTGGTT,"Exon (Gm48209-201/Gm48209-201, exon 2 of 4)",12,12949289,12949535,247,2,Gm48201-201,-100260,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15108,cg07233340,0.00000154,0.0000173,0.089002249,0.929137594,gain,ns,-0.0000239,0.0000294,-0.811808748,0.417524286,neg,ns,-0.018027473,0.008623013,-2.090623467,0.037376022,neg,ns,1.427406927,0.00024441,0.000296545,0.824191956,0.410464169,pos,ns,0.674655844,Zfp827,Zfp827_threeUTR,8,79189755,79189804,79189803,79189804,50,-,ATCTGCCAGACGGTGAAGGCCAACCAGCTGGAGCTGGAGACGCACACCCG,3' UTR,8,79028437,79193743,165307,1,Zfp827-202,161318,Zfp827-202;Zfp827-203;Zfp827-209;Zfp827-206;Zfp827-205;Zfp827-207;Zfp827-204,Zfp827;Zfp827;Zfp827;Zfp827;Zfp827;Zfp827;Zfp827,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,12,28,622675,ENSMUSG00000071064,conserved gene and region,8,79189795,79190007,213,*,213,16,0.61971831,0.797192983,0.075117371,1.49E-10,CpGisland,TRUE,U11,Tr-P
9768,cg17323990,-0.00000946,0.00000409,-2.313562264,0.021345692,loss,ns,0.00000564,0.00000695,0.81177933,0.417541143,pos,ns,-0.004863627,0.002035296,-2.389641713,0.017462093,neg,ns,1.757903704,0.000134156,0.00007,1.916686886,0.056196907,pos,ns,0.911183055,Adamts2,Adamts2_Exon,11,50776213,50776262,50776213,50776214,50,-,CGCTTCCACTGGTCCCGCTGCAGCCAGCAGGAGCTGAGCCGCTACCTGCA,"Exon (Adamts2-204/Adamts2, exon 8 of 21)",11,50602084,50798346,196263,1,Adamts2-204,174129,Adamts2-204;Adamts2-201;Adamts2-202,Adamts2;Adamts2;Adamts2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,216725,ENSMUSG00000036545,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14991,cg02577634,-0.00000169,0.0000046,-0.368490595,0.712758969,loss,ns,-0.00000634,0.00000781,-0.811767304,0.417548035,neg,ns,-0.000678815,0.002288192,-0.296660003,0.766924756,neg,ns,0.115247243,-0.000106106,0.0000787,-1.348390446,0.178517152,neg,ns,0.58482242,Foxn1,Foxn1_Promoter,11,78386680,78386729,78386680,78386681,50,+,CGGGGAGAAGAGAAAGGTGACTAAGAAGCTAGTTTGCTCCTTGGCTCTTG,Promoter (<=1kb),11,78357577,78386558,28982,2,Foxn1-201,-122,Foxn1-201,Foxn1,-122,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,1,15218,ENSMUSG00000002057,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3012,cg14182504,-0.00000567,0.00000685,-0.827194499,0.408763106,loss,ns,0.00000945,0.0000116,0.81146709,0.417720092,pos,ns,0.009488364,0.003411589,2.781215296,0.005747083,pos,ns,2.240552521,-0.000374777,0.000117324,-3.194372471,0.001545524,neg,ns,0.854116686,Lrmda,Lrmda_Intron,14,22385758,22385807,22385758,22385759,50,+,CGAGAACTATTATGTTAAATTGTGCTACCTACAACTTAAGCTTCTGTCTT,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,366046,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206;Lrmda-202,Lrmda;Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5519,cg00309562,-0.0000032,0.00000317,-1.008321681,0.314086438,loss,ns,-0.00000437,0.00000539,-0.811310924,0.417809609,neg,ns,0.000602858,0.001578671,0.381876817,0.702814373,pos,ns,0.153159366,0.000016,0.0000543,0.294922078,0.768250817,pos,ns,0.925415884,Pbx3,Pbx3_threeUTR,2,34175893,34175942,34175941,34175942,50,-,TTTCCTCCAAGGCCATCACTGTAGCCTCCCGTCTGATTGATAACATGACG,3' UTR,2,34171457,34372038,200582,2,Pbx3-202,196096,Pbx3-202;Pbx3-201;Pbx3-210;Pbx3-206;Pbx3-207;Pbx3-209,Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,82,18516,ENSMUSG00000038718,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26675,cg08125081,0.00000433,0.0000137,0.315976525,0.75223296,gain,ns,-0.0000189,0.0000233,-0.81120331,0.417871302,neg,ns,-0.010778418,0.006826291,-1.578956736,0.115365791,neg,ns,0.937922951,0.000339879,0.000234756,1.44780136,0.148683177,pos,ns,0.322982135,Rere,Rere_Intron,4,150488255,150488304,150488303,150488304,50,-,CTGTTGGCTGGGCTTTATTTACGGAAACAGCAGGGTTGAGATTGATTGCG,"Intron (Rere-202/Rere, intron 7 of 22)",4,150281646,150621966,340321,1,Rere-202,206609,Rere-202;Rere-201,Rere;Rere,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,7,68703,ENSMUSG00000039852,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U5,En-Sd
4104,cg08514520,0.000105949,0.0000152,6.98819363,1.71E-11,gain,yes,-0.0000209,0.0000258,-0.811125181,0.417916095,neg,ns,0.023007282,0.007545864,3.04899235,0.002494036,pos,ns,2.603097335,-0.000640282,0.000259502,-2.467352339,0.014151688,neg,ns,0.250059288,Gm12070,Gm12070_Intergenic_downstream,11,26806796,26806845,26806844,26806845,50,+,CAGCCATGGAGGTGACTTCGAGTGCTCAGAAGCCTTAGAAAATGTCAACG,Distal Intergenic,11,26786633,26787634,1002,1,Gm12070-201,20163,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,8,654472,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12182,cg06235963,-0.000073,0.0000115,-6.343941049,7.92E-10,loss,yes,0.0000159,0.0000196,0.811108493,0.417925664,pos,ns,-0.006064054,0.005730715,-1.058167091,0.290803114,neg,ns,0.536400947,0.000160633,0.000197079,0.815068694,0.415658732,pos,ns,0.929573084,Map2k5,Map2k5_Intron,9,63242073,63242122,63242073,63242074,50,-,CGAGCCACTGAAGCAAAGGCCCATAAAATACACTAATTACTGGAAGTTAT,"Intron (Map2k5-201/Map2k5, intron 16 of 21)",9,63163768,63377902,214135,2,Map2k5-201,135780,Map2k5-201;Map2k5-202,Map2k5;Map2k5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,34,37,23938,ENSMUSG00000058444,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25172,cg25111256,0.0000272,0.00000828,3.286664218,0.001130171,gain,ns,-0.0000114,0.0000141,-0.811049284,0.417959612,neg,ns,-0.005712042,0.004120222,-1.386343295,0.166638362,neg,ns,0.778225012,-0.0000162,0.000141694,-0.114218642,0.909138413,neg,ns,0.673550054,Plekha6,Plekha6_threeUTR,1,133299008,133299057,133299008,133299009,50,+,CGACAGCAGCTATACCATGCGGGTCTGAGCTCTGACGTAAGCACTTTTCT,3' UTR,1,133181321,133301219,119899,1,Plekha6-204,117687,Plekha6-204;Plekha6-202;Plekha6-201;Plekha6-203;Plekha6-207;Plekha6-210;Plekha6-208,Plekha6;Plekha6;Plekha6;Plekha6;Plekha6;Plekha6;Plekha6,0;0;0;0;0;7258;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,7,240753,ENSMUSG00000041757,conserved gene but different region,1,133298962,133299044,83,*,83,8,0.674698795,0.903401361,0.096385542,0.00000291,CpGisland,TRUE,U11,Tr-P
13272,cg12601476,0.00000022,0.00000269,0.081833249,0.934832126,gain,ns,0.0000037,0.00000456,0.811003543,0.417985839,pos,ns,0.001040158,0.001337371,0.777763575,0.437301568,pos,ns,0.359218965,-0.0000386,0.000046,-0.838450144,0.402423962,neg,ns,0.940051167,Ank3,Ank3_Exon,10,69982161,69982210,69982161,69982162,50,-,CGTAAGCGCTACAGCTACTTGACTGAGCCTGGAATGAGTGAGTTTCCTAA,"Exon (Ank3-247/Ank3, exon 36 of 43)",10,69398996,70023957,624962,1,Ank3-247,583165,Ank3-247;Ank3-231;Ank3-210;Ank3-239;Ank3-240;Ank3-220;Ank3-201;Ank3-202;Ank3-203;Ank3-204;Ank3-206;Ank3-233;Ank3-221;Ank3-232;Ank3-228;Ank3-205;Ank3-215;Ank3-237;Ank3-242;Ank3-208;Ank3-227;Ank3-207;Ank3-230;Ank3-219;Ank3-229;Ank3-244;Ank3-238;Ank3-213;Ank3-224,Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,13,11735,ENSMUSG00000069601,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10264,cg01245471,0.0000295,0.00000449,6.565446783,2.18E-10,gain,yes,-0.00000619,0.00000764,-0.81090175,0.41804421,neg,ns,0.004212044,0.00223705,1.882856781,0.060656004,pos,ns,1.217126208,0.00000582,0.0000769,0.075647753,0.939748139,pos,ns,0.019997439,Evx1,Evx1_Exon,6,52314194,52314243,52314194,52314195,50,-,CGGATTTCTATGAAGAAATCGAGGTGAGCTGCACCCCGGACTGCGCCACC,Promoter (<=1kb),6,52313498,52318378,4881,1,Evx1-201,696,Evx1-201;Evx1-202,Evx1;Evx1,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,19,14028,ENSMUSG00000005503,mapped to different genes,6,52314189,52314303,115,*,115,10,0.617391304,0.93495935,0.086956522,0.000000242,CpGisland,TRUE,NA,NRS
4615,cg23120470,0.0000134,0.00000305,4.380175526,0.0000162,gain,ns,-0.0000042,0.00000518,-0.810823205,0.418089252,neg,ns,0.001612425,0.001518286,1.062003666,0.289060653,pos,ns,0.53901102,-0.0000671,0.0000522,-1.285653597,0.199523536,neg,ns,0.057280106,Ntm,Ntm_Promoter,9,29962642,29962691,29962690,29962691,50,-,CCCATTCCGGTAGCAGCCAGAATCAAATCAATATTCTCACAGCCTAGTCG,Promoter (<=1kb),9,28994750,29963129,968380,2,Ntm-201,438,Ntm-201;Ntm-204;Ntm-210;Ntm-207;Ntm-209,Ntm;Ntm;Ntm;Ntm;Ntm,0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,5,32,235106,ENSMUSG00000059974,conserved gene and region,9,29962690,29962810,121,*,121,11,0.611570248,0.975091575,0.090909091,2.99E-08,CpGisland,TRUE,NA,NRS
25640,cg11787245,-0.00000602,0.00000302,-1.990660149,0.047396005,loss,ns,-0.00000416,0.00000514,-0.810790803,0.418107835,neg,ns,-0.00138779,0.001504616,-0.922354676,0.357060894,neg,ns,0.447257713,0.000000136,0.0000517,0.002634751,0.99789947,pos,ns,0.936649639,Strap,Strap_Exon,6,137736347,137736396,137736347,137736348,50,+,CGCCAGGGAGATACAGGAGACTGGATTGGAACATTTTTGGGTCATAAAGG,"Exon (Strap-201/Strap, exon 2 of 10)",6,137735078,137751932,16855,1,Strap-201,1269,Strap-201,Strap,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,20901,ENSMUSG00000030224,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U4,Pr-F
15469,cg24184266,0.0000385,0.00000498,7.728791871,1.52E-13,gain,yes,0.00000686,0.00000846,0.810652473,0.418187171,pos,ns,0.00616982,0.002479573,2.488259703,0.013361883,pos,ns,1.874132324,-0.0000641,0.0000853,-0.751125856,0.453146723,neg,ns,0.09831002,Sall3,Sall3_fiveUTR,18,80986674,80986723,80986674,80986675,50,-,CGCGCATGGGGCTGAGCAATTAGGCTGGTGAATAATGCATGGCCATTAGC,Promoter (<=1kb),18,80966376,80986771,20396,2,Sall3-201,48,Sall3-201;Sall3-203,Sall3;Sall3,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,10,20689,ENSMUSG00000024565,conserved gene but different region,18,80985515,80986677,1163,*,1163,120,0.682717111,0.88568473,0.103181427,1.42E-92,CpGisland,TRUE,U3,Pr-B
12676,cg25303326,-0.00000115,0.00000405,-0.284070539,0.776545967,loss,ns,-0.00000557,0.00000688,-0.810626133,0.418202279,neg,ns,-0.000310223,0.002014303,-0.15400993,0.877702117,neg,ns,0.056652854,-0.000141588,0.0000693,-2.043950413,0.041803248,neg,ns,0.903736534,Phf20l1,Phf20l1_Exon,15,66580127,66580176,66580127,66580128,50,+,CGCCCTGGAATCACTTTTGAGATTGGTGCTCGTTTGGAGGCACTGGACTA,"Exon (Phf20l1-209/Phf20l1, exon 2 of 9)",15,66577560,66611616,34057,1,Phf20l1-209,2567,Phf20l1-209;Phf20l1-210;Phf20l1-205;Phf20l1-201;Phf20l1-211;Phf20l1-203;Phf20l1-206,Phf20l1;Phf20l1;Phf20l1;Phf20l1;Phf20l1;Phf20l1;Phf20l1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,239510,ENSMUSG00000072501,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9544,cg21007937,0.000163573,0.0000159,10.29611927,1.41E-21,gain,yes,-0.0000219,0.000027,-0.810620337,0.418205604,neg,ns,0.020263223,0.007907049,2.562678325,0.010858871,pos,ns,1.964215333,-0.000474325,0.000271923,-1.744339082,0.082091094,neg,ns,0.603543105,Tra2a,Tra2a_threeUTR,6,49252508,49252557,49252508,49252509,50,+,CGAGACTCCTAACAAAGAAGACAGTATTACAAATGGCACTGGTCATGTAG,3' UTR,6,49243924,49264010,20087,2,Tra2a-204,11453,Tra2a-204;Tra2a-202;Tra2a-201;Tra2a-205,Tra2a;Tra2a;Tra2a;Tra2a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,5,7,101214,ENSMUSG00000029817,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3336,cg13969159,-0.0000152,0.0000101,-1.515230099,0.130733093,loss,ns,-0.0000138,0.0000171,-0.810547445,0.418247414,neg,ns,-0.010208989,0.005005283,-2.039642448,0.0422335,neg,ns,1.374342922,0.000159698,0.000172131,0.927771408,0.35424794,pos,ns,0.661800218,Gm11890,Gm11890_Intergenic_downstream,4,23637115,23637164,23637163,23637164,50,+,GTTGCAGACAATGGGAGTTCCTGAGACAGATGCCCAAATGTAACTAAACG,Distal Intergenic,4,23659928,23660344,417,2,Gm11890-201,23180,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,32,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14672,cg00465284,0.0000552,0.00000474,11.65651696,2.78E-26,gain,yes,-0.00000652,0.00000805,-0.810442815,0.418307433,neg,ns,0.008004929,0.002357738,3.395173619,0.000775125,pos,ns,3.110628481,-0.000128038,0.0000811,-1.579105786,0.115331599,neg,ns,0.075485117,Ctnna2,Ctnna2_Intron,6,77242630,77242679,77242630,77242631,50,+,CGCACAATCGTGAGCAGCTTACGACACTCAGTGAGCAGTAGGTGCCTGTG,"Intron (Ctnna2-204/Ctnna2, intron 8 of 19)",6,76881637,77979699,1098063,2,Ctnna2-204,737020,Ctnna2-204;Ctnna2-205;Ctnna2-202;Ctnna2-201;Lrrtm1-201;Lrrtm1-202;Lrrtm1-203;Lrrtm1-204,Ctnna2;Ctnna2;Ctnna2;Ctnna2;Lrrtm1;Lrrtm1;Lrrtm1;Lrrtm1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,24,12386,ENSMUSG00000063063,conserved gene and region,6,77242605,77243155,551,*,551,46,0.626134301,0.852367501,0.083484574,1.98E-31,CpGisland,TRUE,U3,Pr-B
8435,cg06669050,-0.0000126,0.0000146,-0.86250015,0.38907908,loss,ns,-0.0000201,0.0000248,-0.810402175,0.418330747,neg,ns,-0.018466982,0.007251272,-2.546722963,0.01135718,neg,ns,1.944729495,0.000555606,0.000249371,2.228031804,0.026595617,pos,ns,0.158062999,Zeb2,Zeb2_fiveUTR,2,45113205,45113254,45113253,45113254,50,-,TCTCTGGGAAAGGATCTGGGATAGATTATACCTTGAAGTCTCCGCAAACG,Promoter (<=1kb),2,45020897,45113245,92349,2,Zeb2-209,0,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219;Zeb2-211;Zeb2-210;Zeb2-205;Zeb2-223;Zeb2-217;Zeb2-225;Zeb2-204;Zeb2-206;Zeb2-230,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;-3129;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,15,158,24136,ENSMUSG00000026872,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12556,cg03097904,-0.00000233,0.00000206,-1.133507146,0.257877183,loss,ns,0.00000283,0.00000349,0.810365249,0.418351931,pos,ns,0.001159168,0.001023654,1.1323829,0.258348602,pos,ns,0.587793884,-0.0000314,0.0000352,-0.89073357,0.373762897,neg,ns,0.94635646,Nedd4l,Nedd4l_Exon,18,65172252,65172301,65172300,65172301,50,-,ATAATGATTTCTTGCACAAACAGCCATCAGTGGCCTATGTACATACCACG,"Exon (Nedd4l-215/Nedd4l, exon 14 of 31)",18,64887705,65213404,325700,1,Nedd4l-215,284547,Nedd4l-215;Nedd4l-221;Nedd4l-223;Nedd4l-218;Nedd4l-202;Nedd4l-228;Nedd4l-225;Nedd4l-229;Nedd4l-201;Nedd4l-233;Nedd4l-208;Nedd4l-211;Nedd4l-220;Nedd4l-204;Nedd4l-207;Nedd4l-217;Nedd4l-231,Nedd4l;Nedd4l;Nedd4l;Nedd4l;Nedd4l;Nedd4l;Nedd4l;Nedd4l;Nedd4l;Nedd4l;Nedd4l;Nedd4l;Nedd4l;Nedd4l;Nedd4l;Nedd4l;Nedd4l,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;-1766,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,4,83814,ENSMUSG00000024589,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13899,cg22140816,0.00000234,0.00000477,0.490448161,0.624163759,gain,ns,-0.00000656,0.0000081,-0.810253702,0.418415929,neg,ns,-0.006926624,0.002371735,-2.920488106,0.003751189,neg,ns,2.425830997,0.00018122,0.0000816,2.221822276,0.02701708,pos,ns,0.079701791,Sp9,Sp9_threeUTR,2,73276302,73276351,73276350,73276351,50,-,CAAATTTGCATGTCAAACGGTAAAGGGCAACCTGAGATAAAATGTAAACG,3' UTR,2,73271925,73277471,5547,1,Sp9-201,4377,Sp9-201;Sp9-202,Sp9;Sp9,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,10,21,381373,ENSMUSG00000068859,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
14276,cg12509499,-0.0000287,0.00000632,-4.536508811,0.00000819,loss,ns,-0.0000087,0.0000107,-0.810228842,0.418430192,neg,ns,-0.004171031,0.003144177,-1.326589018,0.18562108,neg,ns,0.731372706,0.0000473,0.000108128,0.437247234,0.662236499,pos,ns,0.853509718,Smg6,Smg6_Intron,11,75033963,75034012,75034011,75034012,50,-,CACTTGCTGTTGAAAGATGTATAGCACTAATTAGAAATACATAACATCCG,"Intron (Smg6-201/Smg6, intron 10 of 18)",11,74925823,75164448,238626,1,Smg6-201,108140,Smg6-201;Smg6-202;Smg6-204,Smg6;Smg6;Smg6,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,34,103677,ENSMUSG00000038290,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
984,cg21846632,0.00000522,0.00000306,1.702883583,0.089592186,gain,ns,-0.00000422,0.00000521,-0.809957191,0.418586071,neg,ns,0.000559565,0.001525072,0.366910765,0.713935905,pos,ns,0.146340776,-0.0000681,0.0000524,-1.298426641,0.195105859,neg,ns,0.027088413,Qk,Qk_Exon,17,10318756,10318805,10318804,10318805,50,-,GGTTGAAGATCCCGCAGAAGTTGGGCAGGCTGCTCATGAGCTTCTTGTCG,Promoter (<=1kb),17,10202601,10319380,116780,2,Qk-204,575,Qk-204;Qk-202;Qk-201;Qk-206,Qk;Qk;Qk;Qk,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,17,19317,ENSMUSG00000062078,conserved gene and region,17,10318331,10319629,1299,*,1299,229,0.788298691,1.137473759,0.176289453,1.34E-239,CpGisland,TRUE,U1,Pr-A
3446,cg13311201,0.0000864,0.0000119,7.23764299,3.61E-12,gain,yes,0.0000164,0.0000203,0.809935304,0.418598633,pos,ns,0.013382017,0.005938852,2.253300159,0.024938887,pos,ns,1.603122927,-0.000117289,0.000204237,-0.574282315,0.566193243,neg,ns,0.600600516,Bcl11a,Bcl11a_Exon,11,24086236,24086285,24086236,24086237,50,-,CGCACAGACATGCTTACTCGAAAAGTTTAAGGGCATGTTGGAAATTTCAA,"Exon (Bcl11a-205/Bcl11a, exon 2 of 2)",11,24078056,24173194,95139,1,Bcl11a-201,8180,Bcl11a-201;Bcl11a-203;Bcl11a-205;Bcl11a-202;Bcl11a-204,Bcl11a;Bcl11a;Bcl11a;Bcl11a;Bcl11a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,51,98,14025,ENSMUSG00000000861,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7225,cg07174525,-0.0000273,0.0000136,-2.012676157,0.045013127,loss,ns,0.0000187,0.0000231,0.809899014,0.41861946,pos,ns,-0.008116637,0.006763267,-1.200106032,0.231014486,neg,ns,0.636360786,0.000173195,0.000232588,0.744640353,0.457053282,pos,ns,0.59562262,Gria3,Gria3_threeUTR,X,41669503,41669552,41669503,41669504,50,-,CGCCTGTAAACCTTGCAGTATTGAAACTCAGTGAACAAGGCATCTTAGAC,3' UTR,20,41401128,41676585,275458,1,Gria3-202,268375,Gria3-202;Gria3-201;Gria3-208;Gria3-206;Gria3-209,Gria3;Gria3;Gria3;Gria3;Gria3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,26,53623,ENSMUSG00000001986,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11980,cg02811998,0.0000044,0.0000051,0.863195027,0.388697573,gain,ns,0.00000701,0.00000866,0.809846994,0.418649315,pos,ns,0.008625384,0.002537046,3.399774868,0.000762663,pos,ns,3.117667333,-0.000263677,0.0000872,-3.022131949,0.00271929,neg,ns,0.900377362,Gm19208,Gm19208_Intergenic_downstream,9,61881494,61881543,61881494,61881495,50,-,CGGTCAGCGGGTTGCCAGCTAAATTTAATATGGATCTATATACAAAGAAA,Distal Intergenic,9,61851704,61852615,912,1,Gm19208-201,29839,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,3,100418429,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6715,cg22928129,-0.00000798,0.00000361,-2.207016903,0.028045417,loss,ns,-0.00000497,0.00000614,-0.809747103,0.418706649,neg,ns,-0.00193544,0.00179911,-1.075776154,0.282863908,neg,ns,0.548422463,-0.0000261,0.0000619,-0.421579839,0.673623902,neg,ns,0.941118188,D630045J12Rik,D630045J12Rik_Exon,6,38174239,38174288,38174287,38174288,50,+,ACTGAGTCTTTCTCCATCTTGATCCTCCACAAAGTAGATGAGCTGTACCG,"Exon (D630045J12Rik-201/D630045J12Rik, exon 9 of 20)",6,38123174,38253955,130782,2,D630045J12Rik-201,79667,D630045J12Rik-201;D630045J12Rik-206;D630045J12Rik-204,D630045J12Rik;D630045J12Rik;D630045J12Rik,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,330286,ENSMUSG00000063455,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13041,cg19432031,-0.00000574,0.00000186,-3.082684982,0.002235758,loss,ns,-0.00000256,0.00000317,-0.809417712,0.418895739,neg,ns,-0.000984541,0.000927404,-1.061609641,0.289239282,neg,ns,0.538742726,-0.0000376,0.0000319,-1.177772385,0.239790733,neg,ns,0.949423242,Chd3,Chd3_Exon,11,69345133,69345182,69345181,69345182,50,-,GACCTGTGATGAAGGACCCTGCAGGCATCTGGCTGTAATTGGCGCCTGCG,Promoter (<=1kb),11,69343273,69346019,2747,2,Chd3-205,837,Chd3-205;Chd3-203;Chd3-202;Chd3-211;Chd3-201;Chd3-204;Chd3-208;Rnf227-201;Rnf227-203;Rnf227-202,Chd3;Chd3;Chd3;Chd3;Chd3;Chd3;Chd3;Rnf227;Rnf227;Rnf227,0;0;0;0;0;0;0;4672;4362;4324,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,22,26,216848,ENSMUSG00000018474,conserved gene but different region,11,69345175,69345252,78,*,78,10,0.769230769,0.870535714,0.128205128,4.96E-09,CpGisland,TRUE,U10,Tr-S
23924,cg05450652,-0.0000643,0.000138052,-0.465529646,0.64187909,loss,ns,-0.000189833,0.000234532,-0.809411415,0.418899354,neg,ns,-0.035945971,0.068710033,-0.523154608,0.601240398,neg,ns,0.220951847,0.001691755,0.002362932,0.715955731,0.474557633,pos,ns,0.557654335,Insig2,Insig2_Intron,1,121136505,121136554,121136553,121136554,50,-,TTCTTGGTTCTTCATGGTAATGCCAAGTATAATTACCATGTAATCTGCCG,"Intron (Celrr-203/Celrr-203, intron 1 of 2)",1,121305893,121307318,1426,2,Insig2-206,170813,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,17,72999,ENSMUSG00000003721,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5389,cg12657372,-0.0000637,0.0000125,-5.088525175,0.000000627,loss,yes,-0.0000172,0.0000213,-0.809320885,0.418951333,neg,ns,-0.007584897,0.006225631,-1.218333873,0.224023523,neg,ns,0.649706377,0.000144487,0.000214099,0.674858634,0.500268584,pos,ns,0.771026571,Mvb12b,Mvb12b_Intron,2,33759577,33759626,33759577,33759578,50,-,CGAGCTTCAACAGAGCTGTAATTAAGCAGGCCTGTAATTAAGTATATGCC,"Intron (Mvb12b-201/Mvb12b, intron 7 of 9)",2,33729953,33887946,157994,2,Mvb12b-201,128320,Mvb12b-201,Mvb12b,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,28,47,72543,ENSMUSG00000038740,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1953,cg25981029,0.0000095,0.00000222,4.28535519,0.0000244,gain,ns,-0.00000305,0.00000377,-0.809293035,0.418967324,neg,ns,0.002038086,0.00110348,1.846963076,0.065705332,pos,ns,1.182399386,-0.000107878,0.0000379,-2.842745844,0.004769475,neg,ns,0.043503978,Rarb,Rarb_fiveUTR,14,16575199,16575248,16575247,16575248,50,-,AATGATCATTTACCATTTTCCAGGCTTGCTCGGCCAATCCAGCCGGGGCG,Promoter (<=1kb),14,16430839,16575543,144705,2,Rarb-201,295,Rarb-201;Rarb-207;Rarb-202;Rarb-206;Rarb-203;Rarb-205;Rarb-204,Rarb;Rarb;Rarb;Rarb;Rarb;Rarb;Rarb,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,16,218772,ENSMUSG00000017491,conserved gene and region,14,16575225,16575399,175,*,175,24,0.754285714,0.98245614,0.137142857,3.28E-22,CpGisland,TRUE,NA,NRS
17329,cg18136967,0.0000585,0.0000046,12.72674651,3.89E-30,gain,yes,-0.00000632,0.00000781,-0.809235315,0.419000468,neg,ns,0.008120133,0.002287108,3.55039277,0.000444329,pos,ns,3.352295693,-0.0000899,0.0000787,-1.14315554,0.253856063,neg,ns,0.101792519,Vcan,Vcan_fiveUTR,13,89742326,89742375,89742326,89742327,50,-,CGGGGCAGCTCGCCTGCAAGTTCAAATGCGGGTTGTGACACCCATCATCA,Promoter (<=1kb),13,89656645,89742334,85690,2,Vcan-202,0,Vcan-203;Vcan-206;Vcan-202;Vcan-201;Vcan-205;Vcan-209,Vcan;Vcan;Vcan;Vcan;Vcan;Vcan,0;0;0;0;-8;-1929,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,6,13003,ENSMUSG00000021614,conserved gene and region,13,89742082,89742416,335,*,335,23,0.605970149,0.757620452,0.068656716,4.35E-14,CpGisland,TRUE,U3,Pr-B
11888,cg14930197,-1.45E-08,0.00000196,-0.007370817,0.994123734,loss,ns,0.0000027,0.00000333,0.809215048,0.419012106,pos,ns,0.000857902,0.000976201,0.878816608,0.380181384,pos,ns,0.420009152,0.0000116,0.0000336,0.345586533,0.729887862,pos,ns,0.941450635,Gm28094,Gm28094_Intergenic_upstream,1,61472604,61472653,61472652,61472653,50,+,TCTATCAGAGTTACGATGGCATATCTCAAATAAGTGGTTCCTGGGTGCCG,Distal Intergenic,1,61548122,61548511,390,1,Gm28094-201,-75469,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1273,cg14800844,0.0000819,0.00000813,10.07008943,8.03E-21,gain,yes,-0.0000112,0.0000138,-0.809171772,0.419036956,neg,ns,0.009724064,0.004048716,2.401764584,0.016904487,pos,ns,1.771997997,-0.000271097,0.000139235,-1.947049295,0.052431658,neg,ns,0.538180511,Bcor,Bcor_Intron,X,12152696,12152745,12152744,12152745,50,-,TGAACATAATGCAAATTATTTATGGGCTGTCTGCGCAATATTTATCATCG,"Intron (Bcor-201/Bcor, intron 1 of 13)",20,12036743,12160355,123613,2,Bcor-201,7610,Bcor-201;Bcor-208,Bcor;Bcor,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,56,74,71458,ENSMUSG00000040363,conserved gene and region,X,12152729,12152829,101,*,101,10,0.653465347,0.935185185,0.099009901,6.91E-08,CpGisland,TRUE,NA,NRS
12498,cg13838401,0.00000324,0.00000317,1.020455013,0.308308413,gain,ns,-0.00000436,0.00000539,-0.809171149,0.419037314,neg,ns,0.002009192,0.001578529,1.272825698,0.204033646,pos,ns,0.690298209,-0.0000319,0.0000543,-0.588370676,0.55671193,neg,ns,0.851411178,Megf11,Megf11_Exon,9,64697836,64697885,64697884,64697885,50,+,GCCAGGTACCCGCCCGAGGACTTCTACATTGAACTTAGACACCTCAGCCG,"Exon (Megf11-202/Megf11, exon 21 of 23)",9,64385626,64700975,315350,1,Megf11-202,312210,Megf11-202;Megf11-203;Megf11-210;Megf11-201;Megf11-209,Megf11;Megf11;Megf11;Megf11;Megf11,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,7,214058,ENSMUSG00000036466,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1070,cg20808354,-0.00000555,0.00000527,-1.053767101,0.292810185,loss,ns,0.00000724,0.00000895,0.809123311,0.419064786,pos,ns,-0.005779662,0.002622099,-2.204211763,0.028244028,neg,ns,1.549073371,0.000150553,0.0000902,1.669585951,0.096010751,pos,ns,0.860136676,Gm14515,Gm14515_Intergenic_upstream,X,11480097,11480146,11480145,11480146,50,+,TCAATGGACCAGGTCGCGAATCTGTCAGATGCAGGAATTTCTGGTGCTCG,Distal Intergenic,20,11601354,11601569,216,1,Gm14515-201,-121208,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,21,28,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19732,cg25636273,-0.00000401,0.00000173,-2.317984537,0.021100812,loss,ns,0.00000237,0.00000294,0.80909841,0.419079086,pos,ns,-0.000482866,0.000859962,-0.561496865,0.574864554,neg,ns,0.240434469,-0.0000121,0.0000296,-0.408652514,0.683076835,neg,ns,0.958985062,Scn8a,Scn8a_Exon,15,100959335,100959384,100959383,100959384,50,-,TGCAGGTATATAACAGAGTTTGTAAACCTAGGCAATGTTTCAGCTCTACG,"Exon (Scn8a-212/Scn8a, exon 6 of 15)",15,100870645,101011064,140420,1,Scn8a-212,88690,Scn8a-212;Scn8a-201;Scn8a-204;Scn8a-213;Scn8a-203;Scn8a-205;Scn8a-208;Scn8a-210;Scn8a-216;Scn8a-215;Scn8a-219,Scn8a;Scn8a;Scn8a;Scn8a;Scn8a;Scn8a;Scn8a;Scn8a;Scn8a;Scn8a;Scn8a,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,18,24,20273,ENSMUSG00000023033,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17442,cg23908395,-0.0000167,0.00000482,-3.458858381,0.000618399,loss,ns,-0.00000663,0.00000819,-0.809052766,0.419105299,neg,ns,-0.002751999,0.002399398,-1.146953968,0.252285104,neg,ns,0.598108392,-0.000152707,0.0000825,-1.850657006,0.065170116,neg,ns,0.04650014,Gatad2b,Gatad2b_Exon,3,90292827,90292876,90292827,90292828,50,+,CGGCTGCCTGGGGACCAAAACGTCTCTAAGGTAAAGTTGCAGCCTGAAGC,Promoter (<=1kb),3,90293178,90363407,70230,1,Gatad2b-205,-302,Gatad2b-205;Gatad2b-206;Gatad2b-202;Gatad2b-204,Gatad2b;Gatad2b;Gatad2b;Gatad2b,0;-308;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,6,229542,ENSMUSG00000042390,conserved gene but different region,3,90292704,90292961,258,*,258,18,0.562015504,0.884571429,0.069767442,2.91E-11,CpGisland,TRUE,NA,NRS
1422,cg27702605,-0.0000216,0.00000579,-3.732929083,0.000225132,loss,ns,-0.00000796,0.00000984,-0.809032152,0.419117138,neg,ns,0.002054321,0.002881673,0.712891806,0.476448973,pos,ns,0.321983604,-0.000127396,0.0000991,-1.285524325,0.199568619,neg,ns,0.94456639,Rpl36-ps3,Rpl36-ps3_Intergenic_upstream,12,12776956,12777005,12777004,12777005,50,+,TGCATTTGAAATTGAAACACAAATTGGCACAAGAACTATTACACATCCCG,Distal Intergenic,12,12912022,12912336,315,1,Rpl36-ps3-201,-135017,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,19,20,100043215,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15711,cg13701059,0.00007,0.0000112,6.25339104,1.33E-09,gain,yes,0.0000154,0.000019,0.808589665,0.419371311,pos,ns,0.016759114,0.005573995,3.006661356,0.002857358,pos,ns,2.544035304,-0.000437338,0.000191689,-2.281494654,0.023196988,neg,ns,0.41767767,Tcf20,Tcf20_Intron,15,82952398,82952447,82952446,82952447,50,+,CCAGCTGTTTGGATGACAAACTGTGTTCAAGCTTCATTAGGGTAATCACG,"Intron (Tcf20-204/Tcf20, intron 1 of 1)",15,82856793,82963558,106766,2,Tcf20-204,11111,Tcf20-204;Tcf20-203,Tcf20;Tcf20,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,13,21411,ENSMUSG00000041852,mapped to different genes,15,82952318,82952577,260,*,260,19,0.630769231,0.738636364,0.073076923,3.18E-12,CpGisland,TRUE,U13,Hc-P
512,cg12178980,-0.0000486,0.00000981,-4.957403046,0.00000118,loss,yes,0.0000135,0.0000167,0.808418793,0.419469488,pos,ns,-0.005358146,0.004880192,-1.097937547,0.273083808,neg,ns,0.56370405,0.000230156,0.000167829,1.371369134,0.171251741,pos,ns,0.678036418,Celf2,Celf2_fiveUTR,2,6722176,6722225,6722176,6722177,50,-,CGCGAGGCATCCATGTGTGCATCAAATTAGTACGTTGTTGCTACTCAGAA,Promoter (<=1kb),2,6623528,6722216,98689,2,Celf2-208,0,Celf2-201;Celf2-202;Celf2-204;Celf2-214;Celf2-206;Celf2-226;Celf2-223;Celf2-224;Celf2-221;Celf2-205;Celf2-211;Celf2-213;Celf2-225;Celf2-228;Celf2-217;Celf2-227;Celf2-210;Celf2-209;Celf2-219;Celf2-208;Celf2-207;Celf2-218;Celf2-203;Celf2-220,Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,24,14007,ENSMUSG00000002107,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
17741,cg18170614,0.00000301,0.00000359,0.837431147,0.402995408,gain,ns,0.00000493,0.0000061,0.808303361,0.419535818,pos,ns,0.00469865,0.001786966,2.629401358,0.008980088,pos,ns,2.046719427,-0.000157224,0.0000615,-2.558421557,0.010989869,neg,ns,0.931436316,Ckap5,Ckap5_Exon,2,91599595,91599644,91599595,91599596,50,+,CGTGGACAGAATTATGTATCGCACTTATAGGATGTAAGTACTGCCTGCTA,"Exon (Ckap5-209/Ckap5, exon 6 of 9)",2,91526762,91620664,93903,1,Ckap5-204,72833,Ckap5-204;Ckap5-201;Ckap5-202;Ckap5-203;Ckap5-209;Ckap5-206,Ckap5;Ckap5;Ckap5;Ckap5;Ckap5;Ckap5,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,75786,ENSMUSG00000040549,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9638,cg25847279,0.0000316,0.0000146,2.167015585,0.030994954,gain,ns,0.00002,0.0000247,0.808279719,0.419549405,pos,ns,0.016948315,0.007246637,2.338783379,0.019981793,pos,ns,1.699365542,-0.000258686,0.000249211,-1.038017659,0.300070798,neg,ns,0.714704644,Dbx1,Dbx1_Promoter,7,49640567,49640616,49640615,49640616,50,-,CTATTGTGCCAATCAAGCAGATGGTTTGCAGGAAATATAGCTTGGCCTCG,Promoter (3-4kb),7,49631499,49636849,5351,2,Dbx1-201,-3767,Dbx1-201,Dbx1,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,8,18,13172,ENSMUSG00000030507,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
12610,cg19654336,0.000062,0.00000981,6.313354511,9.44E-10,gain,yes,-0.0000135,0.0000167,-0.80825555,0.419563294,neg,ns,0.016460138,0.004884806,3.369660218,0.000847739,pos,ns,3.071737789,-0.000267085,0.000167988,-1.589901721,0.112876233,neg,ns,0.100463837,Zfp609,Zfp609_Intron,9,65826281,65826330,65826329,65826330,50,-,TTGAACCTATGACCTTCACTGTGTACACAATAGGCGGGTGAGAGGGACCG,"Intron (Zfp609-201/Zfp609, intron 1 of 9)",9,65692391,65827564,135174,2,Zfp609-201,1234,Trip4-210;Trip4-203;Zfp609-201,Trip4;Trip4;Zfp609,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,10,214812,ENSMUSG00000040524,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
12131,cg05004092,-0.00000508,0.00000135,-3.750037085,0.000210938,loss,ns,-0.00000186,0.0000023,-0.808209831,0.419589568,neg,ns,-0.001443412,0.000674312,-2.140570013,0.033088668,neg,ns,1.480320721,-0.00000744,0.0000232,-0.320632033,0.748705288,neg,ns,0.978237995,Zfp618,Zfp618_Intron,4,63075669,63075718,63075669,63075670,50,+,CGACACAAATAGAATAGATTATGGAGTGTCAGCATGTAGATAGATTCCGA,"Intron (Zfp618-201/Zfp618, intron 3 of 11)",4,62965573,63115748,150176,1,Zfp618-201,110096,Zfp618-201;Zfp618-203;Zfp618-202,Zfp618;Zfp618;Zfp618,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,12,72701,ENSMUSG00000028358,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16953,cg04589802,0.0000546,0.00001,5.445982928,0.000000105,gain,yes,0.0000138,0.000017,0.808198603,0.419596021,pos,ns,0.010740092,0.004985411,2.154304277,0.03198661,pos,ns,1.495031788,-0.0000133,0.000171448,-0.077313335,0.938424158,neg,ns,0.486978356,4933402J07Rik,4933402J07Rik_Intergenic_downstream,8,87660423,87660472,87660471,87660472,50,-,AAACCCCCCGCTGTATTTTTAATGGGGGCAGTGACTAATTTAGCCCTACG,Distal Intergenic,8,87563853,87589424,25572,1,4933402J07Rik-201,96619,Zfp423-203;Zfp423-202;Zfp423-201,Zfp423;Zfp423;Zfp423,0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,5,330820,ENSMUSG00000069971,mapped to different genes,8,87660067,87660482,416,*,416,27,0.622596154,0.680809795,0.064903846,8.30E-16,CpGisland,TRUE,U13,Hc-P
2912,cg08811596,0.00000087,0.00000303,0.286752718,0.774493227,gain,ns,0.00000416,0.00000515,0.807891356,0.419772619,pos,ns,0.001338217,0.001509833,0.886334645,0.376124276,pos,ns,0.424668636,-0.0000521,0.0000519,-1.003331952,0.316483238,neg,ns,0.927702022,Lrmda,Lrmda_Intron,14,22046534,22046583,22046582,22046583,50,+,TAATTGACAAATGAGTGTCACAAATGTGAATTGGTGCCTTTACATCAGCG,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,26822,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206,Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19826,cg18310610,-0.0000187,0.00000412,-4.535305332,0.00000823,loss,ns,0.00000565,0.00000699,0.807873364,0.419782962,pos,ns,-0.001943271,0.002048489,-0.948636226,0.343544585,neg,ns,0.464016893,0.0000986,0.0000704,1.400009061,0.162510589,pos,ns,0.896680878,Med12,Med12_Exon,X,101282728,101282777,101282728,101282729,50,+,CGAGCTTTGCCCTTGGCATGTCATACCACTTGCCTCTGGTGCAGCATGTG,"Exon (Med12-204/Med12, exon 19 of 46)",20,101274030,101297465,23436,1,Med12-204,8698,Med12-204;Med12-203;Med12-201;Med12-202;Med12-209;Med12-207;Med12-208,Med12;Med12;Med12;Med12;Med12;Med12;Med12,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,15,15,59024,ENSMUSG00000079487,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10379,cg16701192,0.00000261,0.00000131,1.993697692,0.047061031,gain,ns,0.0000018,0.00000223,0.807834908,0.419805069,pos,ns,0.000913041,0.000652081,1.400196417,0.162454541,pos,ns,0.789268145,-0.00000812,0.0000224,-0.362231664,0.717425729,neg,ns,0.03584075,Creb5,Creb5_fiveUTR,6,53287261,53287310,53287261,53287262,50,-,CGTCACCGGGGGGGTGATGTAATGCACTCTAAATAGAATGTATTGTAATC,Promoter (<=1kb),6,53287270,53391409,104140,1,Creb5-214,0,Creb5-214;Creb5-203;Creb5-213;Creb5-208;Creb5-211;Creb5-210;Creb5-209;Creb5-204;Creb5-207;Creb5-215;Creb5-202,Creb5;Creb5;Creb5;Creb5;Creb5;Creb5;Creb5;Creb5;Creb5;Creb5;Creb5,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,7,12,231991,ENSMUSG00000053007,conserved gene but different region,6,53287053,53287268,216,*,216,28,0.703703704,1.047272727,0.12962963,4.44E-25,CpGisland,TRUE,U3,Pr-B
24538,cg08318939,0.000000862,0.00000193,0.445722313,0.656108969,gain,ns,0.00000265,0.00000329,0.80783137,0.419807103,pos,ns,0.002773019,0.000962535,2.880955012,0.004241166,pos,ns,2.372514706,-0.0000922,0.0000331,-2.786603537,0.005654731,neg,ns,0.953481166,Taok2,Taok2_Intron,7,126867387,126867436,126867387,126867388,50,-,CGGAAGCGTTGTGATAGCAAAATACTGGAAACAACCTAAATGTCCACCAA,"Intron (Taok2-205/Taok2, intron 3 of 4)",7,126865678,126871641,5964,2,Taok2-205,4205,Hirip3-201;Hirip3-207;Hirip3-206;Hirip3-202;Hirip3-203;Hirip3-204;Hirip3-205;Taok2-205;Taok2-201;Taok2-203;Taok2-202,Hirip3;Hirip3;Hirip3;Hirip3;Hirip3;Hirip3;Hirip3;Taok2;Taok2;Taok2;Taok2,5415;4948;4923;4920;4906;3544;2971;0;0;-131;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,11,381921,ENSMUSG00000059981,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14530,cg26080060,-0.0000847,0.0000141,-6.023080917,4.84E-09,loss,yes,-0.0000193,0.0000239,-0.807607372,0.419935886,neg,ns,0.006145773,0.006996585,0.878396056,0.380409131,pos,ns,0.419749067,-0.000407815,0.000240612,-1.694908761,0.091096919,neg,ns,0.679094353,Nrip1,Nrip1_Intron,16,76321759,76321808,76321759,76321760,50,-,CGGGTTAGTGTGACCTTGAGCTGCATCAGCAGCACAGCAAGGGTCGAGAT,"Intron (Nrip1-202/Nrip1, intron 3 of 3)",16,76287400,76373827,86428,2,Nrip1-202,52019,Nrip1-202;Nrip1-201;Nrip1-208;Nrip1-204;Nrip1-207,Nrip1;Nrip1;Nrip1;Nrip1;Nrip1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,8,268903,ENSMUSG00000048490,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6249,cg14738011,-0.00000656,0.00000371,-1.768123029,0.078023876,loss,ns,-0.00000509,0.0000063,-0.807588535,0.419946716,neg,ns,-0.002214353,0.001846184,-1.199421232,0.231280131,neg,ns,0.635861674,0.0000994,0.0000635,1.566369023,0.118282432,pos,ns,0.933731872,Tshz3,Tshz3_Intergenic_upstream,7,36603092,36603141,36603092,36603093,50,+,CGTTATTCTCCTGAAACCTAGGCGGCTATGAGAATTGTCAGACGGATCAT,Distal Intergenic,7,36698118,36773553,75436,1,Tshz3-201,-94977,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,12,58,243931,ENSMUSG00000021217,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22901,cg06040937,0.000000834,0.00000152,0.549491369,0.583063905,gain,ns,0.00000208,0.00000258,0.80754948,0.419969173,pos,ns,0.001693916,0.000755521,2.242049718,0.025665101,pos,ns,1.590657027,-0.0000371,0.000026,-1.426616786,0.154696728,neg,ns,0.019915069,Lrrc41,Lrrc41_Exon,4,116075449,116075498,116075497,116075498,50,-,TCTGTGAGGTAGCGGCGGCAACGACCATGGAGGCCACGTCCCGGGAGGCG,Promoter (<=1kb),4,116075463,116083056,7594,1,Lrrc41-206,0,Lrrc41-201;Lrrc41-206;Lrrc41-202;Lrrc41-204;Lrrc41-205;Uqcrh-201;Uqcrh-204;Uqcrh-202;Uqcrh-203,Lrrc41;Lrrc41;Lrrc41;Lrrc41;Lrrc41;Uqcrh;Uqcrh;Uqcrh;Uqcrh,0;0;0;-1387;-3918;-418;-415;-378;-390,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,9,230654,ENSMUSG00000028703,conserved gene and region,4,116075337,116076722,1386,*,1386,139,0.714285714,0.81376508,0.1002886,3.09E-105,CpGisland,TRUE,U1,Pr-A
21730,cg23320654,0.0000441,0.00000642,6.870704494,3.51E-11,gain,yes,0.0000088,0.0000109,0.807495919,0.419999971,pos,ns,0.012292575,0.003193861,3.848813987,0.000144152,pos,ns,3.841179579,-0.0000122,0.000109837,-0.111203195,0.911527181,neg,ns,0.153067189,Axin2,Axin2_Intron,11,108923011,108923060,108923011,108923012,50,-,CGCAGATAGCTGGGTTGCTTGATTTGAATTTGAGGAGTTGAAAAGCCTGT,"Intron (Axin2-201/Axin2, intron 1 of 10)",11,108920349,108950783,30435,1,Axin2-201,2662,Axin2-201;Axin2-204;Axin2-207;Axin2-206;Axin2-202,Axin2;Axin2;Axin2;Axin2;Axin2,0;0;0;0;-121,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,2,12006,ENSMUSG00000000142,conserved gene and region,11,108922938,108923014,77,*,77,8,0.532467533,1.509803922,0.103896104,0.00000163,CpGisland,TRUE,U3,Pr-B
3985,cg21191048,-0.0000309,0.0000104,-2.977080602,0.003139407,loss,ns,0.0000143,0.0000177,0.807164009,0.420190856,pos,ns,0.001216155,0.005173761,0.235062023,0.814315789,pos,ns,0.089207145,-0.00028789,0.000177925,-1.618040462,0.106670859,neg,ns,0.837934448,Gm7847,Gm7847_Intron,18,26197192,26197241,26197240,26197241,50,-,TTAAGGTTAACTGTAGCACATTTTGCTTACTGTATTATTAATGACTTTCG,"Intron (Gm33228-201/Gm33228-201, intron 8 of 13)",18,25823581,25824357,777,2,Gm7847-201,-372884,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,22,665916,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23571,cg16366607,-0.00000631,0.00000489,-1.291335389,0.197549451,loss,ns,0.0000067,0.00000831,0.807136783,0.420206516,pos,ns,-0.000753947,0.002433594,-0.309807887,0.756915206,neg,ns,0.12095277,-0.0000984,0.0000837,-1.175528818,0.240685251,neg,ns,0.464066282,Cbx8,Cbx8_fiveUTR,11,119040877,119040926,119040877,119040878,50,-,CGCTTCCAGGAGCAGAAAAGCAGCAGCCAGCGCACGACAGACCATAATAC,Promoter (<=1kb),11,119039184,119040911,1728,2,Cbx8-203,0,Cbx8-201;Cbx8-202;Cbx8-203,Cbx8;Cbx8;Cbx8,0;-46;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,6,30951,ENSMUSG00000025578,conserved gene and region,11,119040751,119041145,395,*,395,40,0.673417722,1.002983559,0.101265823,6.48E-31,CpGisland,TRUE,U1,Pr-A
1034,cg21807305,0.000011,0.00000509,2.166077182,0.031067245,gain,ns,0.00000697,0.00000864,0.807104951,0.420224826,pos,ns,0.00933447,0.00253181,3.686876811,0.00026795,pos,ns,3.571945989,-0.000290849,0.0000871,-3.340453253,0.000938629,neg,ns,0.088609517,Grm1,Grm1_fiveUTR,10,11082347,11082396,11082395,11082396,50,-,GCGATCTGGGCTGTACACTAGTGCCCTCTTTCTTCAGCACTATTTTACCG,Promoter (<=1kb),10,10686059,11082356,396298,2,Grm1-201,0,Grm1-201;Grm1-203;Grm1-202;Grm1-206,Grm1;Grm1;Grm1;Grm1,0;0;0;-97,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,7,14816,ENSMUSG00000019828,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
21064,cg21231949,0.0000214,0.000016,1.338675384,0.181657259,gain,ns,0.0000219,0.0000271,0.807095041,0.420230526,pos,ns,0.007799349,0.007953764,0.980585865,0.327561652,pos,ns,0.484706947,-0.000562993,0.000273529,-2.058256643,0.040401084,neg,ns,0.606601769,Vrk1,Vrk1_Intergenic_downstream,12,106227162,106227211,106227210,106227211,50,-,ATTAAATTAAACCACCCCTTTAAGAATATTTAGATCTGGTCTGCCAAGCG,Distal Intergenic,12,106030717,106075409,44693,1,Vrk1-204,196494,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,29,37,22367,ENSMUSG00000021115,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5317,cg08229223,0.0000566,0.00000469,12.05784736,1.03E-27,gain,yes,-0.00000643,0.00000797,-0.806991692,0.420289977,neg,ns,0.006476543,0.002336089,2.772387324,0.005901348,pos,ns,2.229048756,-0.0000245,0.0000803,-0.305473375,0.76021066,neg,ns,0.060424349,Nkx1-1,Nkx1-1_Promoter,5,33432998,33433047,33432998,33432999,50,+,CGGCCCCTAATAAGTGTAATAGGTTTTAATCGAGTAATTATCCGAATTTT,Promoter (<=1kb),5,33430734,33433976,3243,2,Nkx1-1-201,929,Nkx1-1-201,Nkx1-1,0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,8,13,672284,ENSMUSG00000029112,conserved gene but different region,5,33432835,33433235,401,*,401,27,0.518703242,1.022283071,0.067331671,3.24E-16,CpGisland,TRUE,U13,Hc-P
25582,cg00147440,0.0000266,0.00000634,4.189091284,0.0000366,gain,ns,-0.00000869,0.0000108,-0.806959058,0.420308751,neg,ns,-0.00114813,0.003155463,-0.363854511,0.716214681,neg,ns,0.144956781,-0.00012662,0.000108516,-1.166833714,0.244174324,neg,ns,0.80275314,Ebf3,Ebf3_Intron,7,137258752,137258801,137258800,137258801,50,-,ACTAAAATGATCCTGTCACATGCACCAAATATTAAAATCGCACAGCGGCG,"Intron (Ebf3-204/Ebf3, intron 6 of 15)",7,137193673,137314445,120773,2,Ebf3-204,55644,Ebf3-204;Ebf3-201;Ebf3-202;Ebf3-203;Ebf3-208;Ebf3-205,Ebf3;Ebf3;Ebf3;Ebf3;Ebf3;Ebf3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,62,84,13593,ENSMUSG00000010476,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23629,cg05772846,-0.0000384,0.00000945,-4.063062477,0.0000614,loss,ns,0.000013,0.0000161,0.806916358,0.420333315,pos,ns,-0.011060537,0.004704017,-2.351295904,0.019333967,neg,ns,1.713679028,0.000180896,0.000161771,1.118222209,0.264337892,pos,ns,0.868742266,Dpyd,Dpyd_Intron,3,119362006,119362055,119362054,119362055,50,-,GCTTATTATAATACCCTGTCCAAAAACAACTTGACAAATTTGTGATTTCG,"Intron (Dpyd-201/Dpyd, intron 20 of 22)",3,118562129,119432924,870796,1,Dpyd-201,799877,Dpyd-201,Dpyd,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,14,29,99586,ENSMUSG00000033308,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26295,cg04411335,0.0000173,0.00000815,2.128556299,0.034079289,gain,ns,-0.0000112,0.0000138,-0.806883443,0.420352252,neg,ns,0.008725472,0.004055185,2.151682604,0.032194501,pos,ns,1.492218297,-0.000294775,0.000139457,-2.113723258,0.035337433,neg,ns,0.156603731,Cdk8,Cdk8_threeUTR,5,146299532,146299581,146299532,146299533,50,-,CGAGAATTTTTAACGGAAGAAGAACCTGATGACAAAGGAGACAAAGTAAG,3' UTR,5,146231230,146302874,71645,1,Cdk8-207,68302,Cdk8-207;Cdk8-205;Cdk8-201;Cdk8-203;Cdk8-204,Cdk8;Cdk8;Cdk8;Cdk8;Cdk8,0;0;0;0;3167,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,TRUE,FALSE,threeUTR,2,6,264064,ENSMUSG00000029635,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2650,cg25235127,-0.0000151,0.00000928,-1.625695407,0.1050306,loss,ns,0.0000127,0.0000158,0.806868584,0.4203608,pos,ns,0.028247351,0.004618777,6.115763554,2.89E-09,pos,ns,8.539040601,-0.001093296,0.000158839,-6.883028912,3.26E-11,neg,yes,0.43703925,Syn1,Syn1_threeUTR,X,20861488,20861537,20861536,20861537,50,-,GGCTGGCGAAAGACTTCCTCAGGCTGCGGATGGTCTCAGCTTTCACCTCG,3' UTR,20,20860511,20921004,60494,2,Syn1-202,59467,Araf-207;Araf-201;Araf-206;Syn1-202;Syn1-201,Araf;Araf;Araf;Syn1;Syn1,0;0;3765;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,4,20964,ENSMUSG00000037217,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27151,cg27331535,0.00000469,0.00000493,0.950156828,0.342772736,gain,ns,0.00000676,0.00000838,0.806821168,0.42038808,pos,ns,0.002682993,0.002455706,1.092554665,0.275437701,pos,ns,0.559976615,-0.000169303,0.0000845,-2.004733379,0.045860831,neg,ns,0.916465039,Rpe65,Rpe65_Exon,3,159614146,159614195,159614194,159614195,50,-,GATCCAATAAGCAAGTCAGAGATCGTTGTACAATTCCCCTGCAGTGACCG,"Exon (Rpe65-202/Rpe65, exon 7 of 15)",3,159599175,159625321,26147,1,Rpe65-202,14971,Rpe65-202;Rpe65-201,Rpe65;Rpe65,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,19892,ENSMUSG00000028174,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3670,cg03310335,0.00000619,0.0000115,0.536099274,0.592274396,gain,ns,0.0000158,0.0000196,0.806704669,0.420455111,pos,ns,0.013619976,0.005743483,2.371379334,0.018332688,pos,ns,1.736773843,-0.000119308,0.000197518,-0.604034877,0.546262228,neg,ns,0.361764219,Erfl,Erfl_Promoter,7,24953468,24953517,24953516,24953517,50,-,ACAATGCTGTCTGCGCAAACTTTAATTAACACTTTGAGTTAATTAGTTCG,Promoter (9-10kb),7,24927445,24944494,17050,2,Erfl-201,-9023,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,29,36,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
9715,cg08105780,-0.00000122,0.00000179,-0.681463949,0.496086735,loss,ns,-0.00000245,0.00000303,-0.806685556,0.420466108,neg,ns,-0.001014603,0.000889009,-1.141274386,0.254636602,neg,ns,0.59407917,0.0000498,0.0000306,1.627331514,0.104682647,pos,ns,0.956655502,Bbx,Bbx_Exon,16,50197595,50197644,50197595,50197596,50,-,CGGCATTTCTTTTGGCTGTCCATCATGGGTGAGCGGAGTTGACCTCTGAC,"Exon (Bbx-208/Bbx, exon 17 of 17)",16,50191844,50432390,240547,2,Bbx-208,234746,Bbx-208;Bbx-201;Bbx-203;Bbx-205,Bbx;Bbx;Bbx;Bbx,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,10,70508,ENSMUSG00000022641,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7995,cg21531923,0.0000319,0.00000625,5.102263618,0.000000586,gain,yes,0.00000856,0.0000106,0.806650035,0.420486547,pos,ns,0.008135045,0.003110704,2.615178197,0.009354173,pos,ns,2.028994609,-0.000100096,0.000106977,-0.935682387,0.350165053,neg,ns,0.125688292,Pax2,Pax2_Intergenic_upstream,19,44675013,44675062,44675061,44675062,50,+,CAGAGCAAGGTGCAAATTCCTGGCATCTTTACTAGTTGCAGCCAATTTCG,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-80983,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,19,44675061,44675159,99,*,99,13,0.696969697,1.086993243,0.131313131,7.58E-12,CpGisland,TRUE,U13,Hc-P
7096,cg10753788,-0.000000243,0.0000122,-0.01991542,0.984123656,loss,ns,0.0000167,0.0000207,0.806575003,0.420529724,pos,ns,-0.006600594,0.006069117,-1.087570587,0.277629572,neg,ns,0.556534276,0.000188158,0.000208716,0.901501858,0.368021406,pos,ns,0.610475309,Gm5973,Gm5973_Intergenic_upstream,1,40943382,40943431,40943430,40943431,50,+,TATAGTTTTGTGATGAGCTTTGTCAATCACAGCTGACCTGCTGTGTACCG,Distal Intergenic,1,40863737,40864232,496,2,Gm5973-201,-79150,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,18,18,546733,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7823,cg20508187,0.0000133,0.00000552,2.419065977,0.016135899,gain,ns,0.00000756,0.00000937,0.806454854,0.420598868,pos,ns,0.004770298,0.002745728,1.737352915,0.08331808,pos,ns,1.079260749,-0.0000856,0.0000944,-0.907041795,0.365089207,neg,ns,0.922772386,Lrrc4b,Lrrc4b_Exon,7,44461339,44461388,44461339,44461340,50,+,CGCTACCTCAACCTGGGCATGTGCAACCTCAAGGACATCCCCAACCTGAC,"Exon (Lrrc4b-202/Lrrc4b, exon 3 of 3)",7,44429018,44461361,32344,1,Lrrc4b-202,32321,Aspdh-201;Aspdh-204;Aspdh-205;Aspdh-202;Aspdh-203;Aspdh-206;Lrrc4b-202;Lrrc4b-201;Lrrc4b-203,Aspdh;Aspdh;Aspdh;Aspdh;Aspdh;Aspdh;Lrrc4b;Lrrc4b;Lrrc4b,-4003;-4021;-4029;-4038;-4056;-4842;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,272381,ENSMUSG00000047085,conserved gene and region,7,44460924,44461340,417,*,417,25,0.60911271,0.648926237,0.059952038,7.03E-14,CpGisland,TRUE,U13,Hc-P
3286,cg07278571,0.00000461,0.00000336,1.372988655,0.170748198,gain,ns,-0.0000046,0.0000057,-0.806407551,0.420626092,neg,ns,0.001939187,0.001671157,1.160386034,0.246784517,pos,ns,0.607682091,-0.000139288,0.0000575,-2.423626015,0.015938536,neg,ns,0.928062778,Usp34,Usp34_Exon,11,23464570,23464619,23464618,23464619,50,-,TTGCTTTCATTTTGGTACAATGTCTGTGCTGACTGTCCAGAGAATATCCG,"Exon (Usp34-208/Usp34, exon 68 of 80)",11,23306895,23490560,183666,1,Usp34-208,157675,Usp34-208;Usp34-205;Usp34-203;Usp34-206,Usp34;Usp34;Usp34;Usp34,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,13,14,17847,ENSMUSG00000056342,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26444,cg13884903,0.0000207,0.00000464,4.46323045,0.0000113,gain,ns,-0.00000636,0.00000788,-0.806401921,0.420629332,neg,ns,0.003415398,0.002309763,1.47867942,0.140241375,pos,ns,0.853123839,-0.0000494,0.0000794,-0.621505666,0.534723728,neg,ns,0.051271241,Foxa2,Foxa2_Intergenic_downstream,2,148040283,148040332,148040331,148040332,50,-,CACTGCCCGCTAGTTTAAAAATGAATATTTTACCAAGATATCGATCAGCG,Distal Intergenic,2,148044240,148045464,1225,2,Foxa2-203,5181,Foxa2-202;Foxa2-201;Foxa2-204;Foxa2-203,Foxa2;Foxa2;Foxa2;Foxa2,0;0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,25,15376,ENSMUSG00000037025,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
9649,cg08044528,0.000061,0.00000781,7.819748938,8.35E-14,gain,yes,-0.0000107,0.0000133,-0.806352905,0.420657544,neg,ns,-0.003259625,0.003885406,-0.838940503,0.402149147,neg,ns,0.395612849,0.000137157,0.000133619,1.026482478,0.3054645,pos,ns,0.473905399,Dbx1,Dbx1_Intergenic_upstream,7,49696545,49696594,49696545,49696546,50,-,CGGAGGAGTCTATCATTCTGGTGGTGTTATCTTTAGCACTGAATAAAACC,Distal Intergenic,7,49631499,49636849,5351,2,Dbx1-201,-59745,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,18,13172,ENSMUSG00000030507,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9281,cg10162464,-0.00000264,0.00000228,-1.158854286,0.247407486,loss,ns,0.00000312,0.00000387,0.806285588,0.42069629,pos,ns,0.002693797,0.001135068,2.373246718,0.018241948,pos,ns,1.73892879,-0.0000512,0.000039,-1.311846561,0.190542548,neg,ns,0.085170488,Zfp282,Zfp282_fiveUTR,6,47877652,47877701,47877652,47877653,50,+,CGGGGAACAGCACTCCCAGGATGCAGTTTGTGTCAACACGGCCGCAGCCT,Promoter (<=1kb),6,47877656,47892813,15158,1,Zfp282-202,0,Zfp282-201;Zfp282-202;Zfp398-202,Zfp282;Zfp282;Zfp398,0;0;41957,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,5,101095,ENSMUSG00000025821,conserved gene and region,6,47877367,47877695,329,*,329,28,0.686930091,0.726040353,0.085106383,1.35E-19,CpGisland,TRUE,U1,Pr-A
2092,cg10569716,-0.0000389,0.00000783,-4.971119648,0.0000011,loss,yes,0.0000107,0.0000133,0.806208425,0.420740706,pos,ns,-0.001384503,0.00389835,-0.35515115,0.72271787,neg,ns,0.141031207,-0.000304067,0.000134064,-2.2680771,0.024012248,neg,ns,0.634834134,Bhlhe22,Bhlhe22_Intergenic_upstream,3,18043759,18043808,18043807,18043808,50,-,TCAAACTACCCACAGATGAAAGATGACTTAATTGCTTTGACCACAGTCCG,Distal Intergenic,3,18054174,18057517,3344,1,Bhlhe22-201,-10415,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,22,59058,ENSMUSG00000025128,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4638,cg08200817,0.0000706,0.0000121,5.817170398,1.49E-08,gain,yes,-0.0000166,0.0000206,-0.806111299,0.420796617,neg,ns,0.022919512,0.006042396,3.7931163,0.000178844,pos,ns,3.74752644,-0.000493674,0.000207798,-2.375744749,0.018121181,neg,ns,0.404365371,Sptan1,Sptan1_Exon,2,30010916,30010965,30010916,30010917,50,+,CGGACAGAAATCGATGCCAGGGCTGGCACTTTCCAGGCATTTGAGCAGTT,"Exon (Sptan1-205/Sptan1, exon 32 of 57)",2,29965560,30031448,65889,1,Sptan1-205,45356,Sptan1-205;Sptan1-204;Sptan1-203;Sptan1-202;Sptan1-201;Sptan1-208;Sptan1-211;Sptan1-216,Sptan1;Sptan1;Sptan1;Sptan1;Sptan1;Sptan1;Sptan1;Sptan1,0;0;0;0;0;0;9032;6828,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,7,20740,ENSMUSG00000057738,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4605,cg07425439,0.0000201,0.00000925,2.17696125,0.030237655,gain,ns,0.0000127,0.0000157,0.806068228,0.420821412,pos,ns,0.014558028,0.004606277,3.160475701,0.001730701,pos,ns,2.761778015,-0.000439982,0.000158409,-2.77749971,0.005811561,neg,ns,0.111650145,Mdga1,Mdga1_Intron,17,29928992,29929041,29928992,29928993,50,+,CGTTCATTTTCAAAGCTGTTTCAAAGTGACTCTGATAAGCAAATTGCTGG,"Intron (Mdga1-205/Mdga1, intron 3 of 20)",17,29829414,29970087,140674,2,Mdga1-205,41046,Mdga1-205,Mdga1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,4,74762,ENSMUSG00000043557,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25119,cg22040780,-0.0000313,0.00000563,-5.556539696,5.93E-08,loss,yes,0.00000771,0.00000957,0.806034897,0.420840601,pos,ns,-0.00224067,0.0028031,-0.799354274,0.424697061,neg,ns,0.371920745,0.000169132,0.0000964,1.754506626,0.08033171,pos,ns,0.891189172,Ahdc1,Ahdc1_Intron,4,133021576,133021625,133021624,133021625,50,-,GGAATCTCCACCATCTGTTCCACCCCCTAATTACAGATGCACAGAATCCG,"Intron (Ahdc1-210/Ahdc1, intron 2 of 3)",4,133011260,133060820,49561,1,Ahdc1-210,10316,Ahdc1-210;Ahdc1-203;Ahdc1-204;Ahdc1-205;Ahdc1-207;Ahdc1-211;Ahdc1-209;Ahdc1-206;Ahdc1-201,Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,35,49,230793,ENSMUSG00000037692,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5563,cg20832337,-0.0000889,0.0000101,-8.782851677,1.10E-16,loss,yes,0.0000139,0.0000172,0.805822726,0.42096276,pos,ns,0.006723434,0.005038795,1.334333643,0.183073841,pos,ns,0.737373707,-0.000487513,0.000173284,-2.813379143,0.005215454,neg,ns,0.482351932,Gm5708,Gm5708_Intron,3,34266826,34266875,34266826,34266827,50,-,CGAAAATGTACTTGGATGTGTCTCAATATTTTGGAGAGCCATTCATGTTG,"Intron (Sox2ot-204/Sox2ot-204, intron 2 of 3)",3,34183307,34184192,886,1,Gm5708-201,83568,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,8,435727,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3014,cg23037044,-0.00000915,0.00000641,-1.427962482,0.154309294,loss,ns,-0.00000878,0.0000109,-0.805739831,0.421010493,neg,ns,-0.005493799,0.003190738,-1.721795915,0.086104026,neg,ns,1.064976539,0.0000769,0.000109729,0.701223992,0.483689281,pos,ns,0.844489171,Etv5,Etv5_Intron,16,22389724,22389773,22389772,22389773,50,-,TAAGCTGGATGACTATCAAAAGACATTTGATTAGGGGGCCTGCCAAAACG,"Intron (Etv5-201/Etv5, intron 11 of 12)",16,22381309,22439719,58411,2,Etv5-201,49946,Etv5-201;Etv5-203;Etv5-205,Etv5;Etv5;Etv5,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,3,104156,ENSMUSG00000013089,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25035,cg04902446,-0.00000949,0.00000643,-1.475936278,0.140975998,loss,ns,-0.0000088,0.0000109,-0.805725584,0.421018698,neg,ns,-0.002797115,0.003200874,-0.873859797,0.382871053,neg,ns,0.416947467,0.0000145,0.000110078,0.131748667,0.895268556,pos,ns,0.917175061,Fgfr2,Fgfr2_Intron,7,131740478,131740527,131740478,131740479,50,-,CGAGAGACAATTGAAAACAAGGTAAAAATGGTAAATTATAAATAACGGTA,"Intron (Fgfr2-217/Fgfr2, intron 2 of 6)",7,130162451,133123350,2960900,2,Fgfr2-217,1382823,Fgfr2-217,Fgfr2,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,58,79,14183,ENSMUSG00000030849,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11662,cg15931876,-0.000000511,0.00000343,-0.149086893,0.881582008,loss,ns,-0.00000469,0.00000583,-0.805643137,0.421066177,neg,ns,-0.005153499,0.001706962,-3.019106142,0.002745802,neg,ns,2.561330738,0.0000445,0.0000587,0.758452987,0.448756083,pos,ns,0.895348976,Pkm,Pkm_Exon,9,59675550,59675599,59675550,59675551,50,+,CGGATGTTGCTCCCCTAGATTGCCCGTGAGGCAGAGGCTGCCATCTACCA,"Exon (Pkm-201/Pkm, exon 9 of 11)",9,59656368,59679375,23008,1,Pkm-201,19182,Gramd2-202;Pkm-201;Pkm-202;Pkm-205;Pkm-204;Pkm-203,Gramd2;Pkm;Pkm;Pkm;Pkm;Pkm,-4545;0;0;18974;17307;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,18746,ENSMUSG00000032294,conserved gene and region,9,59675532,59675770,239,*,239,15,0.644351464,0.605574324,0.062761506,7.80E-09,CpGisland,TRUE,NA,NRS
7841,cg17365410,-0.00000226,0.00000192,-1.180187419,0.238830486,loss,ns,-0.00000263,0.00000326,-0.80542134,0.421193919,neg,ns,-0.001848672,0.000955039,-1.935704178,0.053812998,neg,ns,1.269112811,0.0000346,0.0000328,1.052962791,0.293178082,pos,ns,0.953688857,Gm12455,Gm12455_Intergenic_downstream,4,44508708,44508757,44508708,44508709,50,-,CGGCCTGCGTCGGGAAGTTCACATATTTGGGCATTAGTGCAGCTATTAGT,Distal Intergenic,4,44382922,44383337,416,1,Gm12455-201,125835,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,15,15,,NA,mapped to different genes,4,44508566,44508719,154,*,154,13,0.662337662,0.784482759,0.084415584,2.76E-09,CpGisland,TRUE,U15,NS
6737,cg26430247,0.0000008,0.00000138,0.580649258,0.561898725,gain,ns,-0.00000188,0.00000234,-0.805379369,0.421218095,neg,ns,0.000137088,0.00068544,0.200000202,0.841611557,pos,ns,0.074888309,-0.0000209,0.0000236,-0.888326174,0.375054063,neg,ns,0.973504047,Gsk3b,Gsk3b_threeUTR,16,38243494,38243543,38243494,38243495,50,+,CGGCCTGTATTATTGTAACAATAACTCTAGCAATGTATAGTGTATCTATA,3' UTR,16,38089001,38246084,157084,1,Gsk3b-201,154493,Gsk3b-201;Gsk3b-202;Gsk3b-205;Nr1i2-201,Gsk3b;Gsk3b;Gsk3b;Nr1i2,0;0;0;51281,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,11,56637,ENSMUSG00000022812,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1262,cg09496347,-0.0000229,0.00000724,-3.159185016,0.001738141,loss,ns,0.0000099,0.0000123,0.805129591,0.421361985,pos,ns,0.015194754,0.003604151,4.215904509,0.0000327,pos,ns,4.485731488,-0.000205218,0.000123946,-1.655702597,0.098793951,neg,ns,0.536376032,Bcor,Bcor_Exon,X,12137461,12137510,12137509,12137510,50,-,CCAGTCCAACCTGCCAGTGATAATGTGCGATCAACACCAAATCACCCCCG,"Exon (Bcor-208/Bcor, exon 2 of 5)",20,12036743,12160355,123613,2,Bcor-201,22845,Bcor-201;Bcor-208,Bcor;Bcor,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,74,71458,ENSMUSG00000040363,conserved gene but different region,X,12137394,12137618,225,*,225,20,0.635555556,0.882352941,0.088888889,1.63E-14,CpGisland,TRUE,U3,Pr-B
27330,cg20892669,-0.000000384,0.00000049,-0.783664822,0.433835138,loss,ns,0.00000067,0.000000832,0.805104106,0.421376668,pos,ns,-0.000334673,0.000243636,-1.373661849,0.170539216,neg,ns,0.768175739,0.000011,0.00000838,1.308159966,0.191788198,pos,ns,0.990369897,Ncoa5,Ncoa5_Exon,2,165002618,165002667,165002618,165002619,50,+,CGGCCCTGCCACGTAGCTCACCAGGCAGAGAGTCGGTGCTGCTCCTCATC,"Exon (Ncoa5-201/Ncoa5, exon 7 of 8)",2,165000357,165034867,34511,2,Ncoa5-201,32200,Ncoa5-201;Ncoa5-202;Ncoa5-203;Ncoa5-204;Slc12a5-207;Slc12a5-201;Slc12a5-208;Slc12a5-205,Ncoa5;Ncoa5;Ncoa5;Ncoa5;Slc12a5;Slc12a5;Slc12a5;Slc12a5,0;0;0;0;0;0;0;6027,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,7,228869,ENSMUSG00000039804,conserved gene and region,2,165002583,165002718,136,*,136,11,0.610294118,0.869767442,0.080882353,0.000000102,CpGisland,TRUE,U10,Tr-S
7347,cg15607893,-0.000078,0.0000111,-7.02562365,1.36E-11,loss,yes,0.0000152,0.0000189,0.805066562,0.421398299,pos,ns,-0.003003729,0.005525807,-0.543581974,0.58711985,neg,ns,0.231273236,-0.000140156,0.000190032,-0.737536338,0.461354135,neg,ns,0.805558562,Pou4f3,Pou4f3_Intergenic_upstream,18,42379123,42379172,42379171,42379172,50,-,TTAGCTCATGAATAATTGACTGTCTGGGTAATCCTAGATACATTTCCTCG,Distal Intergenic,18,42394539,42397249,2711,1,Pou4f3-201,-15416,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,17,18998,ENSMUSG00000024497,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7944,cg08731014,-0.000000029,0.00000377,-0.007689159,0.993869945,loss,ns,0.00000515,0.0000064,0.805004335,0.421434153,pos,ns,-0.002576248,0.001875797,-1.373414739,0.170615904,neg,ns,0.767980488,0.0000686,0.0000645,1.062839969,0.288681769,pos,ns,0.93125859,Hif1an,Hif1an_Intergenic_downstream,19,44646933,44646982,44646933,44646934,50,+,CGGTCAAAGACAATATTTTAAGGGAAAATTAACGCAAGATTATTAACCTA,Distal Intergenic,19,44562850,44576274,13425,1,Hif1an-201,84083,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,31,319594,ENSMUSG00000036450,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26378,cg05933419,0.0000158,0.00000336,4.697577443,0.00000396,gain,ns,-0.0000046,0.00000571,-0.804957806,0.421460962,neg,ns,-0.0000172,0.001672548,-0.010301591,0.991787291,neg,ns,0.003581461,-0.0000139,0.0000575,-0.241865298,0.809044457,neg,ns,0.058603198,Gsx1,Gsx1_Promoter,5,147186474,147186523,147186474,147186475,50,+,CGCTTTGAAGTTTTTGTCTAATGGCTCTAAACTGAAAGAAAATGTTTTCC,Promoter (2-3kb),5,147188696,147190947,2252,1,Gsx1-201,-2173,Gsx1-201,Gsx1,-2173,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,6,20,14842,ENSMUSG00000053129,conserved gene and region,5,147185829,147186475,647,*,647,43,0.627511592,0.683143033,0.066460587,3.39E-25,CpGisland,TRUE,U3,Pr-B
11116,cg26251208,-0.00000461,0.00000305,-1.51188294,0.13158236,loss,ns,0.00000417,0.00000518,0.804912246,0.421487216,pos,ns,-0.001253375,0.001518338,-0.825491638,0.409727328,neg,ns,0.387505068,-0.0000121,0.0000522,-0.232169159,0.816559822,neg,ns,0.89732422,Lingo1,Lingo1_Intron,9,56643117,56643166,56643165,56643166,50,+,GTCATGTCGCACCCATAAACAGCTTGTTAGCTAAGACTAACGAAGGGGCG,"Intron (Lingo1-201/Lingo1, intron 3 of 3)",9,56618475,56685253,66779,2,Lingo1-201,42087,Lingo1-201;Lingo1-206;Lingo1-202,Lingo1;Lingo1;Lingo1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,25,235402,ENSMUSG00000049556,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13038,cg02725055,0.0000122,0.00000233,5.222247091,0.000000325,gain,yes,-0.00000319,0.00000396,-0.804902414,0.421492881,neg,ns,-0.000383207,0.0011605,-0.330208638,0.741465362,neg,ns,0.129909133,0.0000251,0.0000399,0.628058686,0.5304279,pos,ns,0.035763651,Tcf4,Tcf4_fiveUTR,18,69344529,69344578,69344529,69344530,50,-,CGCAGTTCCCGGATGTGAATGGATTACAATGTATCTTTCAGGGAAACCTA,Promoter (<=1kb),18,69344529,69683264,338736,1,Tcf4-254,0,Tcf4-259;Tcf4-201;Tcf4-207;Tcf4-210;Tcf4-240;Tcf4-254;Tcf4-246;Tcf4-206;Tcf4-202;Tcf4-257;Tcf4-232;Tcf4-215;Tcf4-248;Tcf4-231;Tcf4-205;Tcf4-253;Tcf4-244;Tcf4-233;Tcf4-238;Tcf4-245;Tcf4-249;Tcf4-219;Tcf4-235;Tcf4-227,Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,12,66,21413,ENSMUSG00000053477,conserved gene and region,18,69344226,69344539,314,*,314,34,0.681528662,0.937725077,0.108280255,2.04E-27,CpGisland,TRUE,NA,NRS
7665,cg02918319,0.0000401,0.00000431,9.317729503,2.29E-18,gain,yes,-0.00000589,0.00000732,-0.804863649,0.421515219,neg,ns,0.004603391,0.002144083,2.147020776,0.032567046,pos,ns,1.487221627,-0.00000179,0.0000737,-0.024302306,0.98062711,neg,ns,0.100277953,Nkx2-3,Nkx2-3_Intergenic_downstream,19,43616611,43616660,43616659,43616660,50,-,TTATTGGAGTCCCGAACAAAAGGTGTGGTAGGAAGGCGAGGTCCCCTGCG,Downstream (<1kb),19,43612325,43615892,3568,1,Nkx2-3-201,4335,Nkx2-3-201,Nkx2-3,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,5,6,18089,ENSMUSG00000044220,conserved gene and region,19,43616270,43616905,636,*,636,57,0.682389937,0.781074268,0.089622642,1.32E-40,CpGisland,TRUE,U13,Hc-P
2102,cg18056436,0.000136049,0.0000356,3.820880824,0.000160667,gain,ns,-0.0000487,0.0000605,-0.804780356,0.421563219,neg,ns,0.016359193,0.017721864,0.923107905,0.356668892,pos,ns,0.447734768,0.000400618,0.000609453,0.657340343,0.511449853,pos,ns,0.622737963,Skida1,Skida1_fiveUTR,2,18048780,18048829,18048780,18048781,50,-,CGCTGCTTTAGCTACAAATAAAATGACAGAGTGAAGTGAGCTCGTCCGGA,Promoter (<=1kb),2,18047716,18048784,1069,2,Skida1-203,0,Skida1-205;Skida1-202;Skida1-201;Skida1-203;Skida1-204,Skida1;Skida1;Skida1;Skida1;Skida1,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,8,31,72668,ENSMUSG00000054074,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
24380,cg18552533,-0.00000164,0.00000254,-0.647295433,0.517919791,loss,ns,0.00000347,0.00000431,0.804483944,0.421734059,pos,ns,0.002913799,0.001262757,2.30749067,0.02168595,pos,ns,1.66382155,-0.000085,0.0000434,-1.958497937,0.051068036,neg,ns,0.102824544,Chd4,Chd4_fiveUTR,6,125096679,125096728,125096727,125096728,50,+,AGAGGACAGCCTTTGGAGAGCTGCCCTGTCTGGGGACTGGCCCCTCCCCG,Promoter (<=1kb),6,125095981,125130585,34605,1,Chd4-203,698,Chd4-203;Chd4-201;Chd4-202;Chd4-208;Chd4-207,Chd4;Chd4;Chd4;Chd4;Chd4,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,15,107932,ENSMUSG00000063870,conserved gene and region,6,125096727,125096818,92,*,92,9,0.75,0.800773694,0.097826087,0.000000448,CpGisland,TRUE,U1,Pr-A
16021,cg02260294,-0.00000732,0.00000259,-2.832323795,0.004923619,loss,ns,0.00000353,0.00000439,0.804470364,0.421741887,pos,ns,0.001966492,0.001287169,1.527764684,0.127590634,pos,ns,0.894181205,-0.0000406,0.0000443,-0.91649604,0.360119199,neg,ns,0.931183558,Zfp407,Zfp407_Intron,18,84232712,84232761,84232712,84232713,50,+,CGGGATTAAAGCTTTCACTTCTAAAGTACATATAAATTGCAGGGTTTCTT,"Intron (Zfp407-201/Zfp407, intron 2 of 2)",18,84128027,84558425,430399,2,Zfp407-201,325664,Zfp407-201;Zfp407-202,Zfp407;Zfp407,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,32,240476,ENSMUSG00000048410,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16944,cg05372644,0.0000228,0.00000494,4.603852322,0.00000606,gain,ns,-0.00000675,0.0000084,-0.804451751,0.421752616,neg,ns,0.003891476,0.002459787,1.582037915,0.114660595,pos,ns,0.940585811,-0.000154798,0.0000846,-1.829938252,0.068219337,neg,ns,0.122273378,Gm9540,Gm9540_Intergenic_downstream,9,87557096,87557145,87557096,87557097,50,+,CGTTTGGTGTTCTAATTAGGCGAGTCTGGGACTTTGGAAAATGTGCTGTT,Distal Intergenic,9,87394250,87394727,478,1,Gm9540-201,162846,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,7,671706,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2157,cg05955690,0.0000458,0.0000114,3.999151304,0.0000795,gain,ns,-0.0000156,0.0000194,-0.804288173,0.421846917,neg,ns,-0.004311185,0.00569487,-0.757029623,0.449607102,neg,ns,0.347166838,0.000453324,0.000195846,2.314695524,0.021282703,pos,ns,0.785623754,Pou6f2,Pou6f2_Exon,13,18129110,18129159,18129110,18129111,50,+,CGCCGGATTTTAAAAGCTTTGGCAAATTCTCGGATCTCCTCCAGATTAAC,"Exon (Pou6f2-201/Pou6f2, exon 7 of 8)",13,18121098,18382041,260944,2,Pou6f2-201,252882,Pou6f2-201;Pou6f2-202;Pou6f2-204,Pou6f2;Pou6f2;Pou6f2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,18,218030,ENSMUSG00000009734,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21657,cg00776783,0.0000016,0.00000059,2.704830131,0.007211666,gain,ns,-0.000000806,0.000001,-0.804269194,0.421857858,neg,ns,-0.000674931,0.000293626,-2.298606417,0.022192379,neg,ns,1.653796132,0.0000123,0.0000101,1.222294492,0.222524811,pos,ns,0.99021511,Zfhx3,Zfhx3_fiveUTR,8,108792223,108792272,108792271,108792272,50,+,ATGAAAGCTCCACGCAGGCCTTACCATGGAAGGCTGTGACTCGCCCGTCG,5' UTR,8,107942644,108961630,1018987,1,Zfhx3-204,849579,Zfhx3-204;Zfhx3-202;Zfhx3-201,Zfhx3;Zfhx3;Zfhx3,0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,11,177,11906,ENSMUSG00000038872,conserved gene but different region,8,108792264,108792380,117,*,117,9,0.64957265,0.737394958,0.076923077,0.00000341,CpGisland,TRUE,U11,Tr-P
14537,cg21472783,-0.00000112,0.00000056,-1.99972926,0.046401811,loss,ns,0.000000765,0.000000952,0.80425573,0.421865621,pos,ns,0.000500812,0.000278837,1.796074271,0.073456317,pos,ns,1.133970852,-0.000018,0.00000959,-1.878947346,0.061189792,neg,ns,0.011074876,Zbtb1,Zbtb1_fiveUTR,12,76370449,76370498,76370497,76370498,50,-,GGGGAAGGCTGGCGGACGCCGCAGCGAACTGGTGGGCAGACCCGGAGTCG,Promoter (<=1kb),12,76370266,76396950,26685,1,Zbtb1-201,183,Zbtb1-201;Zbtb25-201;Zbtb25-205;Zbtb25-204;Zbtb25-203;Zbtb25-206,Zbtb1;Zbtb25;Zbtb25;Zbtb25;Zbtb25;Zbtb25,0;-985;-1450;-847;-1056;-985,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,5,268564,ENSMUSG00000033454,conserved gene and region,12,76369872,76370962,1091,*,1091,133,0.747937672,0.884434638,0.121906508,2.50E-113,CpGisland,TRUE,U1,Pr-A
27407,cg21450314,-0.0000086,0.00000334,-2.578866115,0.01037335,loss,ns,0.00000456,0.00000567,0.804222763,0.421884628,pos,ns,-0.00134407,0.001659954,-0.809703478,0.418731689,neg,ns,0.378064171,0.0000433,0.0000571,0.758570021,0.44868615,pos,ns,0.926174184,Cse1l,Cse1l_Exon,2,166935898,166935947,166935946,166935947,50,+,CTGAAAGCTGTTTTTTCATCTATAGCTTTACAGCTGCAGAAATCGCACCG,"Exon (Cse1l-201/Cse1l, exon 16 of 25)",2,166906040,166944550,38511,1,Cse1l-212,29858,Cse1l-212;Cse1l-201;Cse1l-211;Cse1l-210;Cse1l-206;Cse1l-203;Cse1l-204;Cse1l-209;Cse1l-205;Cse1l-208;Cse1l-207;Cse1l-202,Cse1l;Cse1l;Cse1l;Cse1l;Cse1l;Cse1l;Cse1l;Cse1l;Cse1l;Cse1l;Cse1l;Cse1l,0;0;0;0;0;8333;8174;0;0;0;-1146;-4886,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,110750,ENSMUSG00000002718,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17818,cg19996711,-0.000036,0.00000903,-3.985473395,0.000084,loss,ns,-0.0000123,0.0000153,-0.804198642,0.421898535,neg,ns,-0.010378485,0.004492103,-2.310384308,0.0215232,neg,ns,1.667093152,0.0000936,0.000154483,0.60597911,0.544972062,pos,ns,0.788639351,Ambra1,Ambra1_Intron,2,91859625,91859674,91859673,91859674,50,-,TTTATTACCCTGTGATCGACAGATGAGGAAAGCTGCCAGTCAAACCCACG,"Intron (Ambra1-203/Ambra1, intron 12 of 18)",2,91730134,91918849,188716,1,Ambra1-203,129491,Ambra1-203;Ambra1-205;Ambra1-204;Ambra1-202;Ambra1-201,Ambra1;Ambra1;Ambra1;Ambra1;Ambra1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,12,228361,ENSMUSG00000040506,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25321,cg07472297,0.00000139,0.00000388,0.358224307,0.720419266,gain,ns,0.0000053,0.00000659,0.804192623,0.421902005,pos,ns,-0.000156908,0.001930818,-0.081265113,0.935283559,neg,ns,0.0290567,-0.0000682,0.0000664,-1.027029915,0.305207074,neg,ns,0.869532029,Lgr6,Lgr6_Exon,1,135021781,135021830,135021829,135021830,50,+,TCCAGATTGTGCAGCCCCTCGAAGCTGTGGGTCCCCAGATGCTGGATGCG,"Exon (Lgr6-201/Lgr6, exon 6 of 18)",1,134983301,135105276,121976,2,Lgr6-201,83446,Lgr6-201;Lgr6-202;Lgr6-203,Lgr6;Lgr6;Lgr6,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,329252,ENSMUSG00000042793,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15970,cg02649631,0.0000947,0.0000176,5.365537099,0.000000158,gain,yes,-0.0000241,0.00003,-0.804164968,0.42191795,neg,ns,0.030228287,0.008781746,3.442172796,0.000656317,pos,ns,3.182886437,-0.000688066,0.000302004,-2.278338566,0.02338655,neg,ns,0.501216095,Tshz1,Tshz1_Intron,18,84070950,84070999,84070950,84070951,50,+,CGAAATGTGCTAGCCTGTGATAAATAAAAGCTACATTAGTCAATTATTAA,"Intron (Tshz1-201/Tshz1, intron 1 of 1)",18,84011627,84086404,74778,2,Tshz1-201,15405,Tshz1-201;Tshz1-202;Tshz1-203;Tshz1-204,Tshz1;Tshz1;Tshz1;Tshz1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,18,110796,ENSMUSG00000046982,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14669,cg18701907,-0.0000957,0.000011,-8.702543433,1.95E-16,loss,yes,0.000015,0.0000187,0.804158976,0.421921405,pos,ns,-0.005544134,0.005473891,-1.012832338,0.31193011,neg,ns,0.505942702,-0.0000977,0.000188247,-0.519202361,0.603990104,neg,ns,0.743551216,Usp25,Usp25_Exon,16,77237200,77237249,77237200,77237201,50,+,CGGCCATGCTCGAAGCCAGCTCTGCAGCTCAGCCAATCAGTGACATCATT,"Exon (Mir99ahg-214/Mir99ahg-214, exon 2 of 4)",16,77083900,77108205,24306,1,Usp25-203,153300,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,5,30940,ENSMUSG00000022867,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16893,cg00373808,0.000000385,0.00000595,0.064637449,0.948504328,gain,ns,0.00000813,0.0000101,0.804067749,0.421974007,pos,ns,0.005596968,0.002962848,1.889050106,0.059818317,pos,ns,1.223165813,-0.00018576,0.000101892,-1.823108256,0.069249995,neg,ns,0.908956782,Diaph3,Diaph3_Intron,14,87124657,87124706,87124705,87124706,50,+,ATTATTGATGTTGTCACCTGCTACAGACTTAATTCCAAGAAAAATATACG,"Intron (Diaph3-201/Diaph3, intron 1 of 27)",14,86655367,87141224,485858,2,Diaph3-201,16518,Diaph3-201;Diaph3-202;Diaph3-208;Diaph3-205;Diaph3-209;Diaph3-203,Diaph3;Diaph3;Diaph3;Diaph3;Diaph3;Diaph3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,11,56419,ENSMUSG00000022021,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2806,cg00696388,0.0000497,0.0000065,7.653608795,2.50E-13,gain,yes,-0.00000888,0.000011,-0.804055281,0.421981196,neg,ns,0.011897802,0.003234923,3.677924437,0.000277119,pos,ns,3.557334274,-0.00042818,0.000111249,-3.848857176,0.000144128,neg,ns,0.072034647,Tspan12,Tspan12_Promoter,6,21852222,21852271,21852270,21852271,50,+,CCTGGGCAGCAGTTGCTGGAAAGTCTCTGCTAAGCCACCTCCCAGCGCCG,Promoter (<=1kb),6,21771395,21852515,81121,2,Tspan12-201,244,Tspan12-202;Tspan12-201;Tspan12-203;Tspan12-204;Tspan12-205;Tspan12-206,Tspan12;Tspan12;Tspan12;Tspan12;Tspan12;Tspan12,-134;0;-241;-308;-53;-394,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,1,1,269831,ENSMUSG00000029669,conserved gene but different region,6,21852224,21852369,146,*,146,11,0.671232877,0.687205819,0.075342466,0.000000212,CpGisland,TRUE,U1,Pr-A
5883,cg16175906,-0.0000058,0.00000307,-1.890904997,0.059569315,loss,ns,-0.00000419,0.00000521,-0.804028603,0.421996579,neg,ns,-0.002858829,0.0015274,-1.871696787,0.062190121,neg,ns,1.206278601,0.000049,0.0000525,0.932842658,0.351627184,pos,ns,0.934193395,Bag6,Bag6_Exon,17,35146757,35146806,35146805,35146806,50,-,ACGATGCAGGGTGAGGGCCCCCAGCTGCTTCTCTCAGAGGCTGTGAGCCG,"Exon (Bag6-202/Bag6, exon 23 of 24)",17,35135178,35147305,12128,1,Bag6-202,11579,Bag6-202;Bag6-201;Bag6-203;Bag6-210;Bag6-213;Bag6-211;Bag6-216;Bag6-215;Bag6-207;Bag6-204;Prrc2a-201;Prrc2a-206;Prrc2a-204;Prrc2a-202,Bag6;Bag6;Bag6;Bag6;Bag6;Bag6;Bag6;Bag6;Bag6;Bag6;Prrc2a;Prrc2a;Prrc2a;Prrc2a,0;0;0;0;0;0;5598;0;0;0;0;0;3560;4146,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,224727,ENSMUSG00000024392,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20321,cg01683044,0.00000843,0.00000205,4.118851586,0.0000489,gain,ns,0.00000279,0.00000348,0.803858593,0.422094621,pos,ns,0.002392467,0.001018539,2.348919742,0.019455553,pos,ns,1.710956417,-0.0000315,0.000035,-0.899737015,0.368958594,neg,ns,0.043359026,Hoxc5,Hoxc5_Intron,15,102998147,102998196,102998195,102998196,50,-,TCACAAGTTGGATTGGCCACAAGAAGTCATGTGGATTCCATCCATGAACG,"Intron (Hoxc5-202/Hoxc5, intron 1 of 1)",15,102967443,103015676,48234,1,Hoxc5-202,30704,Hoxc5-202;Hoxc6-202;Hoxc6-203;Hoxc8-201;Hoxc8-202,Hoxc5;Hoxc6;Hoxc6;Hoxc8;Hoxc8,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,46,134,15424,ENSMUSG00000022485,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
565,cg27016494,0.0000423,0.00000478,8.838730463,7.40E-17,gain,yes,-0.00000653,0.00000813,-0.803832003,0.422109956,neg,ns,0.009836161,0.002380449,4.132061876,0.0000463,pos,ns,4.334366625,-0.000285928,0.0000819,-3.492741198,0.000547618,neg,ns,0.076148512,Dlx5,Dlx5_Exon,6,6879615,6879664,6879615,6879616,50,-,CGGCCAGCTGAAAGCTGGAATAAATAGTCCTGGGTTTACGAACTTTCTTT,"Exon (Dlx5-202/Dlx5, exon 2 of 3)",6,6877805,6882068,4264,2,Dlx5-202,2404,Dlx5-202;Dlx5-201;Dlx5-203,Dlx5;Dlx5;Dlx5,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,6,13395,ENSMUSG00000029755,conserved gene and region,6,6879439,6879654,216,*,216,18,0.611111111,0.905871389,0.083333333,1.33E-12,CpGisland,TRUE,U13,Hc-P
14128,cg18475091,0.0000382,0.00000572,6.681421235,1.10E-10,gain,yes,-0.00000781,0.00000972,-0.803714257,0.422177867,neg,ns,0.001258724,0.002848134,0.44194685,0.65883581,pos,ns,0.181222803,0.000166788,0.0000979,1.702840724,0.089600219,pos,ns,0.162821932,Hoxd10,Hoxd10_Exon,2,74692453,74692502,74692453,74692454,50,+,CGCCACCGGGAAAACCCAAGAGTACAATAATAGCCCCGAAGGCAGCTCCA,Promoter (<=1kb),2,74691924,74695105,3182,1,Hoxd10-201,529,Hoxd10-201,Hoxd10,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,21,24,15430,ENSMUSG00000050368,conserved gene and region,2,74692453,74693054,602,*,602,35,0.609634552,0.625742457,0.058139535,1.01E-18,CpGisland,TRUE,U13,Hc-P
686,cg06429021,0.0000294,0.00000446,6.581821242,1.98E-10,gain,yes,-0.0000061,0.00000759,-0.803660066,0.422209125,neg,ns,-0.001134141,0.002222211,-0.510365933,0.610158325,neg,ns,0.214557459,0.000150249,0.0000764,1.966052163,0.050184708,pos,ns,0.916280005,Apob,Apob_Intergenic_downstream,12,8031928,8031977,8031976,8031977,50,+,CATAATAGGCAGAACATTAGGTCACTTGTCTCACTTAGAACAATAATCCG,Distal Intergenic,12,8012359,8016835,4477,1,Apob-203,19569,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,4,238055,ENSMUSG00000020609,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4012,cg10681713,0.0000715,0.00000854,8.372019241,1.98E-15,gain,yes,-0.0000117,0.0000145,-0.80357072,0.422260663,neg,ns,0.001219922,0.004249743,0.287057828,0.774259819,pos,ns,0.111113278,0.0000377,0.000146148,0.25804426,0.796543973,pos,ns,0.675527616,Gm50479,Gm50479_Intergenic_downstream,8,26438712,26438761,26438760,26438761,50,+,GCCCCTGAGTGCTTATTCATCAACGTTTTCAAAAGCAAAATCACTCTTCG,Distal Intergenic,8,26237222,26237407,186,1,Gm50479-201,201490,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,21,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
92,cg18031544,0.00000431,0.00000587,0.733878508,0.463577458,gain,ns,0.00000801,0.00000997,0.803523993,0.422287618,pos,ns,0.007409429,0.002920934,2.53666407,0.011681723,pos,ns,1.932493105,-0.000238718,0.000100451,-2.376470695,0.018086217,neg,ns,0.425246722,Pomc,Pomc_Exon,12,3960117,3960166,3960117,3960118,50,+,CGAGGGCAAGCGCTCCTACTCCATGGAGCACTTCCGCTGGGGCAAGCCGG,"Exon (Pomc-204/Pomc, exon 4 of 4)",12,3954951,3960573,5623,1,Pomc-204,5166,Efr3b-201;Efr3b-203;Pomc-204;Pomc-202;Pomc-201;Pomc-203;Pomc-205,Efr3b;Efr3b;Pomc;Pomc;Pomc;Pomc;Pomc,78749;32754;0;0;0;5148;5147,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,18976,ENSMUSG00000020660,conserved gene and region,12,3959827,3960450,624,*,624,52,0.637820513,0.822884967,0.083333333,2.11E-35,CpGisland,TRUE,U4,Pr-F
21864,cg19893145,-0.000043,0.0000104,-4.128108048,0.0000471,loss,ns,-0.0000142,0.0000177,-0.803483387,0.422311043,neg,ns,-0.01199466,0.005183066,-2.314201912,0.021310119,neg,ns,1.671414132,-0.000120112,0.000178245,-0.673857594,0.500903982,neg,ns,0.858501433,Pde4d,Pde4d_Intron,13,109278841,109278890,109278889,109278890,50,+,TCCAGAATTGGCTAGAACATGCCTGTCACTCCCAGCTGACTCTGATGACG,"Intron (Pde4d-209/Pde4d, intron 3 of 16)",13,108654177,109951474,1297298,1,Pde4d-209,624664,Pde4d-209;Pde4d-220;Pde4d-210;Pde4d-214;Pde4d-208;Pde4d-218,Pde4d;Pde4d;Pde4d;Pde4d;Pde4d;Pde4d,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,7,238871,ENSMUSG00000021699,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19763,cg20205471,-0.00000183,0.00000385,-0.4770079,0.633692587,loss,ns,-0.00000525,0.00000653,-0.803472319,0.422317428,neg,ns,-0.001145776,0.00191445,-0.59848843,0.549951111,neg,ns,0.259675916,-0.0000271,0.0000658,-0.412220398,0.680462796,neg,ns,0.938207989,Scn8a,Scn8a_threeUTR,15,101041358,101041407,101041358,101041359,50,+,CGTAGAAATGATTTGCATGATGGCATGCCGTGATCAGAAGTCATGCATGA,3' UTR,15,100870683,101045929,175247,1,Scn8a-201,170675,Scn8a-201;Scn8a-204;Scn8a-213;Scn8a-203;Scn8a-205;Scn8a-208;Tmdd1-201,Scn8a;Scn8a;Scn8a;Scn8a;Scn8a;Scn8a;Tmdd1,0;0;0;0;0;0;5990,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,24,20273,ENSMUSG00000023033,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
20469,cg27020219,0.0000308,0.00000428,7.179196286,5.22E-12,gain,yes,-0.00000585,0.00000728,-0.80346258,0.422323047,neg,ns,0.005544037,0.002132343,2.599974,0.009769454,pos,ns,2.010129701,-0.000106949,0.0000733,-1.458434479,0.14573322,neg,ns,0.023581999,Hoxc4,Hoxc4_Intergenic_downstream,15,103061680,103061729,103061680,103061681,50,-,CGCCTTTGTACGCGTGATTTATGACTTCAGTCTTGGTTCACCAAGAGTTC,Distal Intergenic,15,103034395,103036852,2458,1,Hoxc4-201,27334,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,32,91,15423,ENSMUSG00000075394,mapped to different genes,15,103061537,103061809,273,*,273,19,0.586080586,0.8125,0.06959707,7.69E-12,CpGisland,TRUE,U13,Hc-P
20583,cg23051769,-0.00000126,0.00000164,-0.772055372,0.440669794,loss,ns,0.00000224,0.00000278,0.803439287,0.422336485,pos,ns,0.002138096,0.000815463,2.621941808,0.009174574,pos,ns,2.037414081,-0.0000649,0.000028,-2.313781696,0.021333482,neg,ns,0.953834526,Srek1,Srek1_Exon,13,103766914,103766963,103766914,103766915,50,-,CGGTTCAGACTCCGATCTCATTTCCCCAATGAAGGTTTCACTTGACGGCA,"Exon (Srek1-208/Srek1, exon 3 of 3)",13,103741612,103774608,32997,2,Srek1-201,7645,Srek1-204;Srek1-201;Srek1-210;Srek1-205;Srek1-209;Srek1-206;Srek1-202;Srek1-208,Srek1;Srek1;Srek1;Srek1;Srek1;Srek1;Srek1;Srek1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,10,218543,ENSMUSG00000032621,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
185,cg11421938,-0.00000376,0.00000121,-3.112072282,0.002030836,loss,ns,0.00000165,0.00000205,0.803365398,0.422379114,pos,ns,0.000202191,0.000600567,0.336665888,0.736596575,pos,ns,0.132770305,0.0000053,0.0000207,0.256660035,0.797611478,pos,ns,0.044256052,Casd1,Casd1_Exon,6,4601197,4601246,4601245,4601246,50,+,AGCGGGAGATCAACCACTACTTCAGCGTGAGGAGCGCCAAGGTGCTGGCG,Promoter (<=1kb),6,4601203,4621132,19930,1,Casd1-202,0,Casd1-201;Casd1-204;Casd1-203;Casd1-202,Casd1;Casd1;Casd1;Casd1,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,6,213819,ENSMUSG00000015189,conserved gene and region,6,4600919,4601684,766,*,766,100,0.791122715,0.834786399,0.130548303,8.09E-89,CpGisland,TRUE,U1,Pr-A
27077,cg13400371,-0.00000488,0.00000311,-1.566783286,0.118185529,loss,ns,0.00000425,0.00000529,0.803323335,0.422403382,pos,ns,-0.000574256,0.001549128,-0.370696099,0.711117071,neg,ns,0.148058896,0.0000154,0.0000533,0.288175256,0.773405164,pos,ns,0.934240303,Cnksr2,Cnksr2_threeUTR,X,157833894,157833943,157833942,157833943,50,+,GACGAGGCCATTTTAGTTGCTTGCAAGAGGTTGATGTTGAGTCTGCGCCG,3' UTR,20,157821436,158043294,221859,2,Cnksr2-201,209351,Cnksr2-201;Cnksr2-202,Cnksr2;Cnksr2,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,11,245684,ENSMUSG00000025658,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16661,cg01941433,-0.0000078,0.00000236,-3.300621622,0.001077252,loss,ns,-0.00000323,0.00000402,-0.803269752,0.422434298,neg,ns,-0.002067906,0.001176923,-1.75704421,0.079897442,neg,ns,1.097467127,0.000065,0.0000405,1.606664939,0.109145953,pos,ns,0.952646085,Adamts5,Adamts5_Exon,16,85887879,85887928,85887879,85887880,50,+,CGCTCTGGAGAACATATGGTCCCAACGTCTGCCATTCCCAGGGTGTCACA,"Exon (Adamts5-201/Adamts5, exon 2 of 8)",16,85856173,85901828,45656,2,Adamts5-201,13900,Adamts5-201,Adamts5,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,23794,ENSMUSG00000022894,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8825,cg07134240,-0.0000029,0.00000596,-0.485651086,0.627557638,loss,ns,-0.00000814,0.0000101,-0.803230627,0.422456874,neg,ns,-0.0000669,0.002967832,-0.022557225,0.982017977,neg,ns,0.007880562,-0.0000918,0.000102063,-0.899471036,0.369099967,neg,ns,0.899051175,Pdlim3,Pdlim3_Exon,8,45908510,45908559,45908558,45908559,50,+,GCCTTTTGTTGCAGCTGCAAACATTGATGACAAAAGACAGGTAGTGAGCG,"Exon (Pdlim3-201/Pdlim3, exon 4 of 7)",8,45885461,45919548,34088,1,Pdlim3-201,23049,Pdlim3-201;Pdlim3-204;Pdlim3-203,Pdlim3;Pdlim3;Pdlim3,0;23023;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,53318,ENSMUSG00000031636,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14329,cg26329223,-0.000000649,0.000000963,-0.674309064,0.500617364,loss,ns,0.00000131,0.00000164,0.803089039,0.422538576,pos,ns,0.000201434,0.000479308,0.420259397,0.674587117,pos,ns,0.170961957,0.00000666,0.0000165,0.40391835,0.686551258,pos,ns,0.971632122,Myo5a,Myo5a_threeUTR,9,75168932,75168981,75168980,75168981,50,+,AAGTTTCTGCGCAGAACCAAGGCAGCAACCATCATTCAAAAGTACTGGCG,3' UTR,9,75071188,75223688,152501,1,Myo5a-201,97744,Myo5a-201;Myo5a-214;Myo5a-202;Myo5a-206,Myo5a;Myo5a;Myo5a;Myo5a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,3,17918,ENSMUSG00000034593,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26854,cg11762593,0.000130062,0.000015,8.69828732,2.01E-16,gain,yes,-0.0000204,0.0000254,-0.803087373,0.422539538,neg,ns,0.012322007,0.007442083,1.655720041,0.098790414,pos,ns,1.005285195,-0.000254408,0.000255933,-0.994041616,0.32097787,neg,ns,0.105681543,Ajap1,Ajap1_fiveUTR,4,153482117,153482166,153482117,153482118,50,-,CGGGTCGCTCACCTGAGTCCTAAAAGCTGTTGAATCCACATGGTCACGTT,Promoter (<=1kb),4,153373221,153482811,109591,2,Ajap1-201,645,Ajap1-201;Ajap1-202,Ajap1;Ajap1,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,3,230959,ENSMUSG00000039546,conserved gene but different region,4,153481626,153482123,498,*,498,53,0.732931727,0.796199095,0.106425703,5.03E-42,CpGisland,TRUE,U13,Hc-P
12230,cg05787344,0.0000149,0.0000057,2.6081439,0.009544297,gain,ns,-0.00000778,0.00000969,-0.803065175,0.422552348,neg,ns,0.015249974,0.002837591,5.37426742,0.000000151,pos,ns,6.819828453,-0.000330589,0.0000976,-3.38771739,0.000795722,neg,ns,0.878539734,Ptch1,Ptch1_Intron,13,63554625,63554674,63554625,63554626,50,-,CGTATTCACCAACAAGAGAAAAGGAGGTAAGCTTTGGCGGCCCTGACCTG,"Intron (Ptch1-201/Ptch1, intron 2 of 22)",13,63508328,63565735,57408,2,Ptch1-201,11061,Ptch1-201;Ptch1-204;Ptch1-206;Ptch1-202;Ptch1-207;Ptch1-203;Ptch1-205,Ptch1;Ptch1;Ptch1;Ptch1;Ptch1;Ptch1;Ptch1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,36,19206,ENSMUSG00000021466,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3568,cg06506863,-0.00000134,0.000015,-0.08930162,0.928899873,loss,ns,0.0000204,0.0000254,0.803023171,0.422576589,pos,ns,-0.003258017,0.007446174,-0.437542347,0.662022745,neg,ns,0.179127089,-0.00000964,0.000256073,-0.037637488,0.970000943,neg,ns,0.429219029,Iqca1l,Iqca1l_Intron,5,24551149,24551198,24551149,24551150,50,+,CGCCTCATTGGCTCCCAAATGTATTTTAAATATCACTCTGCGCAGAGACA,"Intron (Iqca1l-201/Iqca1l, intron 5 of 18)",5,24543432,24555410,11979,2,Iqca1l-201,4212,Iqca1l-201;Iqca1l-205;Iqca1l-204;Iqca1l-203;Iqca1l-202,Iqca1l;Iqca1l;Iqca1l;Iqca1l;Iqca1l,0;0;0;4271;5611,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,4,231045,ENSMUSG00000038199,conserved gene and region,5,24550952,24551241,290,*,290,17,0.582758621,0.703481735,0.05862069,1.75E-09,CpGisland,TRUE,U13,Hc-P
22432,cg19116644,-0.0000215,0.00000698,-3.080348652,0.00225284,loss,ns,0.00000952,0.0000119,0.802821944,0.422692727,pos,ns,-0.008373176,0.003475863,-2.408948618,0.016581512,neg,ns,1.780375882,0.0000353,0.000119535,0.295491946,0.767815925,pos,ns,0.923388717,Trabd2b,Trabd2b_Intron,4,114536426,114536475,114536474,114536475,50,+,AGCTCGGCCGATTTATAAGGTAATGATTTTTCCATCCATAATTTCTTTCG,"Intron (Trabd2b-201/Trabd2b, intron 2 of 6)",4,114406724,114615098,208375,1,Trabd2b-201,129702,Trabd2b-201,Trabd2b,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,5,666048,ENSMUSG00000070867,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15750,cg22392274,-0.0000145,0.00000674,-2.154835496,0.031944627,loss,ns,-0.00000919,0.0000115,-0.802775819,0.422719352,neg,ns,-0.001873193,0.003355223,-0.558291687,0.577048214,neg,ns,0.238787899,-0.000116387,0.000115386,-1.008673983,0.313917666,neg,ns,0.86738704,Gm48156,Gm48156_Intron,13,83133434,83133483,83133482,83133483,50,+,AAGTGTGGCTTACATATGGATTTTCAGGATGCCAGATTGGATGCTCCACG,"Intron (2310067P03Rik-201/2310067P03Rik-201, intron 3 of 3)",13,83189565,83189709,145,2,Gm48156-201,56226,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,16,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3809,cg14426076,0.0000413,0.00000777,5.322601888,0.000000197,gain,yes,-0.0000106,0.0000132,-0.802765816,0.422725126,neg,ns,0.011168284,0.003865486,2.889231174,0.004134006,pos,ns,2.383628862,-0.000387503,0.000132934,-2.91500858,0.003815867,neg,ns,0.621180456,Celf4,Celf4_Exon,18,25491076,25491125,25491124,25491125,50,-,CCCACCAAAGCATTTACTTTGGTTAGTCGCCCGATCCACAAACACTTTCG,"Exon (Celf4-202/Celf4, exon 11 of 13)",18,25477632,25753983,276352,2,Celf4-202,262858,Celf4-202;Celf4-201;Celf4-203;Celf4-207;Celf4-206;Celf4-208;Celf4-210,Celf4;Celf4;Celf4;Celf4;Celf4;Celf4;Celf4,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,31,59,108013,ENSMUSG00000024268,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26721,cg10876456,-0.00000982,0.0000096,-1.023294694,0.306966393,loss,ns,0.0000131,0.0000163,0.802604199,0.422818422,pos,ns,0.006455349,0.004776529,1.351472757,0.177529414,pos,ns,0.75072968,-0.000230009,0.000164264,-1.400233174,0.162443547,neg,ns,0.696941463,1700025G04Rik,1700025G04Rik_threeUTR,1,151893318,151893367,151893318,151893319,50,+,CGACCTTTGCAAAGATTTCAACTGGGGTGTAACCTATTTACACAGTAGTA,3' UTR,1,151852403,152089970,237568,2,1700025G04Rik-204,196603,1700025G04Rik-204;1700025G04Rik-201;1700025G04Rik-203;1700025G04Rik-202,1700025G04Rik;1700025G04Rik;1700025G04Rik;1700025G04Rik,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,2,69399,ENSMUSG00000032666,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24359,cg26227044,0.00000467,0.00000381,1.227511641,0.22056165,gain,ns,-0.00000519,0.00000647,-0.802554247,0.422847259,neg,ns,-0.001008936,0.001894926,-0.532440822,0.594802135,neg,ns,0.225627481,-0.0000478,0.0000652,-0.73346684,0.463828055,neg,ns,0.941369464,Exoc8,Exoc8_Exon,8,124896153,124896202,124896153,124896154,50,+,CGAACATGCCCATGGCTGATCTTGCCCAGACCACAAAGGCAGAGTAGCAG,"Exon (Exoc8-201/Exoc8, exon 1 of 1)",8,124893108,124897705,4598,2,Exoc8-201,1503,Exoc8-201;Sprtn-201,Exoc8;Sprtn,0;-1684,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,102058,ENSMUSG00000074030,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
24193,cg14908168,-0.00000375,0.0000126,-0.298345632,0.765639253,loss,ns,0.0000171,0.0000214,0.802516017,0.422869331,pos,ns,0.016463542,0.006254986,2.632066959,0.008911492,pos,ns,2.050049582,-0.001243548,0.000215108,-5.781027742,1.81E-08,neg,yes,0.820619597,Tnrc6a,Tnrc6a_Exon,7,123192759,123192808,123192807,123192808,50,-,TCACTGGAATGGTGCTGGGCTGTCGGGAACTAACTGTGGAGACCTTCACG,"Exon (Tnrc6a-201/Tnrc6a, exon 24 of 24)",7,123124177,123193987,69811,1,Tnrc6a-203,68582,Tnrc6a-203;Tnrc6a-201;Tnrc6a-205;Tnrc6a-208,Tnrc6a;Tnrc6a;Tnrc6a;Tnrc6a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,17,24,233833,ENSMUSG00000052707,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8006,cg15834581,0.000023,0.00000872,2.631453491,0.008927237,gain,ns,-0.0000119,0.0000148,-0.802467712,0.42289722,neg,ns,-0.00280188,0.004341826,-0.645323074,0.519195168,neg,ns,0.284669358,0.0000178,0.000149315,0.118920823,0.905415109,pos,ns,0.633342176,Nepro,Nepro_Intergenic_upstream,16,44679605,44679654,44679653,44679654,50,-,TACTATCAATTAGTTACGGAATGCTACAGGGATTCATGCCTGACAGCTCG,Distal Intergenic,16,44724301,44737284,12984,1,Nepro-201,-44696,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,4,212547,ENSMUSG00000036208,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9292,cg01096178,-0.0000144,0.0000047,-3.068170322,0.002343845,loss,ns,0.0000064,0.00000798,0.802464402,0.422899131,pos,ns,-0.002812131,0.002337296,-1.203155704,0.229834113,neg,ns,0.638585511,0.00000217,0.0000804,0.026956233,0.978511987,pos,ns,0.939402947,Gm47213,Gm47213_Intergenic_upstream,9,47962613,47962662,47962613,47962614,50,+,CGATATTGTTTTTGACATTTAAGAACTCAATTATCCGATGACTAATCAGT,Distal Intergenic,9,47947880,47948161,282,2,Gm47213-201,-14452,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,7,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19110,cg26145001,-0.0000195,0.0000102,-1.910555305,0.056984121,loss,ns,0.0000139,0.0000173,0.802253641,0.423020828,pos,ns,-0.003848086,0.00508139,-0.7572901,0.449451296,neg,ns,0.347317363,0.000338002,0.000174749,1.934218508,0.053996128,pos,ns,0.88664636,Gm765,Gm765_Intergenic_upstream,6,98452364,98452413,98452364,98452365,50,-,CGATAAATTGCAGCTATTGAATGGATTAAGTCTGCACTTCTTGACCTCAT,Distal Intergenic,6,98235708,98342754,107047,2,Gm765-201,-109659,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,10,330390,ENSMUSG00000090667,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10175,cg16287710,0.0000952,0.0000115,8.247984144,4.64E-15,gain,yes,-0.0000157,0.0000196,-0.80221462,0.423043362,neg,ns,0.019229194,0.005744102,3.347641248,0.000915455,pos,ns,3.03836315,-0.000562889,0.000197539,-2.849505656,0.004671857,neg,ns,0.126259517,Gm28308,Gm28308_fiveUTR,6,52208671,52208720,52208719,52208720,50,-,CTGGCTATAACTATTAGTAGTCATCGAACTGGTTTGTTTCTGGATGGCCG,5' UTR,6,52163359,52213339,49981,2,Gm28308-201,4619,Gm28308-201;Hoxa3-201;Hoxa3-203;Hoxa5-201;Hoxa6-201,Gm28308;Hoxa3;Hoxa3;Hoxa5;Hoxa6,0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,21,103,,NA,mapped to different genes,6,52208695,52208947,253,*,253,29,0.691699605,0.989347357,0.114624506,3.13E-24,CpGisland,TRUE,U3,Pr-B
20133,cg12498640,0.0000249,0.00000816,3.053045635,0.002461574,gain,ns,0.0000111,0.0000139,0.802091268,0.423114599,pos,ns,0.011030888,0.004060085,2.716910814,0.006959634,pos,ns,2.157413588,-0.000330738,0.000139626,-2.368745651,0.01846134,neg,ns,0.154814318,Calcoco1,Calcoco1_Intergenic_downstream,15,102694522,102694571,102694522,102694523,50,-,CGGGCATGATGGAGCCCATTAAAATGTTGGGAGATTGTTTTTATGATTGA,Distal Intergenic,15,102706972,102709902,2931,2,Calcoco1-203,15380,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,29,67488,ENSMUSG00000023055,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
22488,cg03722442,0.00000778,0.00000366,2.128101325,0.0341173,gain,ns,0.00000498,0.00000621,0.802074439,0.423124318,pos,ns,0.003407965,0.001819488,1.873034871,0.062004495,pos,ns,1.207576828,-0.000053,0.0000626,-0.846937401,0.397683366,neg,ns,0.014067349,Gm12830,Gm12830_Promoter,4,114821930,114821979,114821978,114821979,50,-,AAGCGGTGAGATATGTAATGCTTTATTAAGCGGTCTCAGCTACAACGGCG,Promoter (<=1kb),4,114821722,114856166,34445,1,Gm12830-201,208,Gm12830-201,Gm12830,0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,6,26,433746,ENSMUSG00000055198,mapped to different genes,4,114821908,114822167,260,*,260,26,0.676923077,0.936936937,0.1,4.14E-20,CpGisland,TRUE,U3,Pr-B
15299,cg24992309,0.0000133,0.00000457,2.909117559,0.003886536,gain,ns,-0.00000622,0.00000776,-0.802022293,0.423154436,neg,ns,0.0000231,0.002273163,0.010154397,0.991904634,pos,ns,0.003530081,0.000252529,0.0000782,3.230352807,0.001369148,pos,ns,0.901500604,Ttll13,Ttll13_Exon,7,80254094,80254143,80254142,80254143,50,+,ATGCACCTGACCAACTATGCTATCAACAAACACAATGAGAATTTTGTCCG,"Exon (Ttll13-201/Ttll13, exon 8 of 15)",7,80246376,80260821,14446,1,Ttll13-201,7718,Ttll13-201;Ttll13-202;Ttll13-203;Ttll13-204,Ttll13;Ttll13;Ttll13;Ttll13,0;0;7100;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,269954,ENSMUSG00000045467,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25619,cg14655297,-0.0000301,0.0000117,-2.56904049,0.01066568,loss,ns,-0.000016,0.0000199,-0.802009573,0.423161783,neg,ns,-0.016997056,0.005840332,-2.910289098,0.003872387,neg,ns,2.412021197,0.000336876,0.000200849,1.677265093,0.094498608,pos,ns,0.606273684,Cdc42,Cdc42_threeUTR,4,137322526,137322575,137322574,137322575,50,-,CAGTTTAGAATATACAGCACTTCCTTTTGGGTTGAGTTTCCGGAGGCTCG,3' UTR,4,137319696,137357720,38025,2,Cdc42-202,35145,Cdc42-202;Cdc42-201,Cdc42;Cdc42,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,2,12540,ENSMUSG00000006699,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18394,cg10504271,-0.00000092,0.0000025,-0.367429362,0.713549487,loss,ns,0.00000341,0.00000425,0.801941147,0.423201305,pos,ns,0.003018144,0.001245851,2.422556068,0.015984652,pos,ns,1.796296817,-0.000154479,0.0000428,-3.605554175,0.000362856,neg,ns,0.056274191,Kbtbd8,Kbtbd8_Exon,6,95118635,95118684,95118635,95118636,50,-,CGATGAAGGACAGTTGACAGACATTGTAGTGGAAGTGGATCACGGGAAAA,"Exon (Kbtbd8-203/Kbtbd8, exon 2 of 3)",6,95117240,95121890,4651,1,Kbtbd8-203,1395,Kbtbd8-203;Kbtbd8-201;Kbtbd8-202;Kbtbd8-204,Kbtbd8;Kbtbd8;Kbtbd8;Kbtbd8,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,243574,ENSMUSG00000030031,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24910,cg16637621,-0.00000221,0.00000198,-1.117228653,0.2647617,loss,ns,0.0000027,0.00000337,0.801762969,0.42330423,pos,ns,0.00264248,0.000986207,2.679437414,0.007768433,pos,ns,2.109666591,-0.0000824,0.0000339,-2.428522672,0.015728982,neg,ns,0.953886841,Sfswap,Sfswap_Exon,5,129503492,129503541,129503540,129503541,50,+,ACCTCCAATGGACGCAAGTTTCTTTGGTGAAGATCTCTCCTGAGAGTTCG,"Exon (Sfswap-212/Sfswap, exon 1 of 1)",5,129501221,129571384,70164,1,Sfswap-201,2271,Sfswap-201;Sfswap-204;Sfswap-212;Sfswap-213;Sfswap-214;Sfswap-208;Sfswap-203;Sfswap-215,Sfswap;Sfswap;Sfswap;Sfswap;Sfswap;Sfswap;Sfswap;Sfswap,0;0;0;0;0;0;0;-800,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,5,231769,ENSMUSG00000029439,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13516,cg24278180,-0.00005,0.0000221,-2.266780533,0.024092335,loss,ns,-0.0000301,0.0000375,-0.801696047,0.423342892,neg,ns,-0.011626163,0.010986091,-1.058262062,0.290759896,neg,ns,0.536465496,-0.000897523,0.000377811,-2.375589669,0.018128657,neg,ns,0.100210503,Arid4a,Arid4a_fiveUTR,12,71015990,71016039,71016038,71016039,50,+,GTCTGCTCAACAGCTTGTTATTTGGTGGATTGTGGCAGTAAATCGGGGCG,Promoter (<=1kb),12,71015990,71098592,82603,1,Arid4a-201,0,Arid4a-201;Arid4a-203;Arid4a-202,Arid4a;Arid4a;Arid4a,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,9,238247,ENSMUSG00000048118,conserved gene and region,12,71016033,71017045,1013,*,1013,128,0.761105627,0.881300636,0.126357354,2.14E-111,CpGisland,TRUE,U1,Pr-A
19565,cg01149078,0.0000116,0.00000315,3.691875195,0.000262956,gain,ns,-0.00000429,0.00000535,-0.801665616,0.423360472,neg,ns,-0.000410538,0.001566297,-0.262107571,0.793412591,neg,ns,0.100500912,-0.0000355,0.0000539,-0.658417992,0.510758265,neg,ns,0.024981,Sox14,Sox14_Intergenic_downstream,9,99869266,99869315,99869266,99869267,50,-,CGGAATTGCACCTTGGGCAGCGGAGCAGAATCCGGAATGTGAACTTCTCC,Distal Intergenic,9,99874220,99875655,1436,2,Sox14-202,6389,Sox14-201;Sox14-202,Sox14;Sox14,0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,12,18,20669,ENSMUSG00000053747,mapped to different genes,9,99869255,99869839,585,*,585,42,0.608547009,0.785385501,0.071794872,5.36E-26,CpGisland,TRUE,U3,Pr-B
25488,cg15022918,-0.00000705,0.000002,-3.526341968,0.000484974,loss,ns,0.00000272,0.0000034,0.80161308,0.423390825,pos,ns,-0.001056511,0.000994858,-1.06197125,0.289075346,neg,ns,0.538988946,0.0000417,0.0000342,1.220020402,0.22338445,pos,ns,0.954097175,Mgmt,Mgmt_Intergenic_upstream,7,136882873,136882922,136882921,136882922,50,+,CATTTGGTTTATTGGGGAAGAGTCATTTATTCCCTGCAACGATGCCCACG,Distal Intergenic,7,136894614,137130266,235653,1,Mgmt-201,-11692,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,16,17314,ENSMUSG00000054612,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25834,cg12185545,0.00000102,0.00000473,0.215052223,0.82986801,gain,ns,0.00000643,0.00000803,0.801511094,0.423449751,pos,ns,0.002667387,0.002351718,1.134229211,0.257574723,pos,ns,0.589096758,-0.000051,0.0000809,-0.631080728,0.528452752,neg,ns,0.090541958,Uncx,Uncx_Intergenic_downstream,5,139599906,139599955,139599954,139599955,50,-,GTTCCACTCCAGTGCCCTCCCCAATAAAACTTTTCATATCCTTATAAACG,Distal Intergenic,5,139543898,139545268,1371,1,Uncx-202,56057,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,59,88,22255,ENSMUSG00000029546,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
17616,cg24587040,-0.0000218,0.00000654,-3.325550334,0.000988426,loss,ns,-0.00000891,0.0000111,-0.801509771,0.423450516,neg,ns,-0.006341407,0.003255557,-1.947871363,0.052332735,neg,ns,1.281226571,-0.00014018,0.000111958,-1.252073935,0.21148676,neg,ns,0.822481894,Elavl2,Elavl2_Exon,4,91260767,91260816,91260767,91260768,50,-,CGCTGTGCCTGCTGAGCTAGCGGTCCTGGATACCTTCTGTTTGGAGACTG,"Exon (Elavl2-204/Elavl2, exon 5 of 6)",4,91250763,91372034,121272,2,Elavl2-204,111218,Elavl2-204;Elavl2-201;Elavl2-207;Elavl2-208;Elavl2-202;Elavl2-209;Elavl2-206;Elavl2-203;Elavl2-205;Elavl2-215;Elavl2-216,Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,31,15569,ENSMUSG00000008489,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5371,cg01127608,0.0000268,0.00000622,4.299702864,0.0000229,gain,ns,-0.00000847,0.0000106,-0.801410436,0.423507915,neg,ns,0.001067691,0.003097154,0.344732814,0.730529007,pos,ns,0.136362535,0.000234553,0.000106511,2.202147267,0.028390976,pos,ns,0.141467527,Lmx1b,Lmx1b_Exon,2,33639482,33639531,33639482,33639483,50,+,CGCTTACTGTTGGTAGTCTTGTTTGCAGTACAGTTTCCGATCCCGGAAGT,"Exon (Lmx1b-201/Lmx1b, exon 2 of 8)",2,33560965,33640608,79644,2,Lmx1b-201,1077,Lmx1b-201;Lmx1b-203;Lmx1b-204,Lmx1b;Lmx1b;Lmx1b,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,26,16917,ENSMUSG00000038765,conserved gene but different region,2,33639200,33640032,833,*,833,76,0.673469388,0.805752832,0.091236495,1.56E-54,CpGisland,TRUE,U3,Pr-B
17200,cg08742271,-0.00000105,0.00000101,-1.036192265,0.300920052,loss,ns,-0.00000138,0.00000172,-0.801295134,0.423574546,neg,ns,0.00026357,0.000504081,0.522871301,0.601437315,pos,ns,0.220809631,-0.0000212,0.0000173,-1.225657184,0.221258029,neg,ns,0.980080643,Clk2,Clk2_Exon,3,89169699,89169748,89169699,89169700,50,-,CGATGTACAAGCCAAATCGTAACAATCCTATAGCCTGTAATGGTCCCATA,"Exon (Clk2-202/Clk2, exon 4 of 13)",3,89164795,89176921,12127,1,Clk2-202,4904,Clk2-202;Clk2-210;Clk2-201;Clk2-209;Clk2-207;Clk2-203;Clk2-204;Clk2-206;Clk2-211;Clk2-205,Clk2;Clk2;Clk2;Clk2;Clk2;Clk2;Clk2;Clk2;Clk2;Clk2,0;4882;0;0;0;0;0;0;0;-4207,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,10,12748,ENSMUSG00000068917,conserved gene and region,3,89169381,89169717,337,*,337,23,0.637982196,0.717685185,0.068249258,4.95E-14,CpGisland,TRUE,U10,Tr-S
19342,cg05775627,0.000142636,0.00000919,15.52381147,1.31E-40,gain,yes,-0.0000125,0.0000156,-0.801196045,0.423631813,neg,ns,0.007845976,0.004573078,1.715688284,0.08721825,pos,ns,1.059392629,-0.0000732,0.000157268,-0.465572633,0.641848348,neg,ns,0.538276457,Prph,Prph_fiveUTR,15,99056380,99056429,99056380,99056381,50,-,CGCAAGATTGAGTCTCTGATGGATGAGATTGAGTTCCTCAAGAAGCTGCA,5' UTR,15,99055174,99058978,3805,1,Prph-204,1206,Prph-204;Prph-202;Prph-201;Prph-203,Prph;Prph;Prph;Prph,0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,2,19132,ENSMUSG00000023484,mapped to different genes,15,99056330,99056381,52,*,52,8,0.653846154,1.439446367,0.153846154,6.51E-08,CpGisland,TRUE,NA,NRS
14969,cg01356224,-0.0000302,0.00000647,-4.678340577,0.00000433,loss,ns,-0.0000088,0.000011,-0.801087817,0.423694366,neg,ns,-0.008956795,0.003217926,-2.78340632,0.005709366,neg,ns,2.243412095,0.000000118,0.000110664,0.001065939,0.99915019,pos,ns,0.938583488,Supt6,Supt6_Exon,11,78220613,78220662,78220613,78220614,50,+,CGTGGAGTGTTACAGCAAAGCTGAGTGGAAAATGAAGTTTTAGAACTTGA,"Exon (Supt6-202/Supt6, exon 6 of 19)",11,78206746,78245987,39242,2,Supt6-201,25325,Supt6-201;Supt6-202,Supt6;Supt6,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,7,20926,ENSMUSG00000002052,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20672,cg02301815,-0.0000738,0.0000106,-6.984665165,1.75E-11,loss,yes,0.0000144,0.0000179,0.801044842,0.423719206,pos,ns,-0.014337829,0.005258013,-2.72685295,0.006758211,neg,ns,2.17016824,0.000171032,0.000180823,0.945855009,0.344959198,pos,ns,0.79796668,Kansl1,Kansl1_fiveUTR,11,104425192,104425241,104425192,104425193,50,+,CGGGCGCCATCGCAGCCATTCAGCACAGAGAGACAGGAAGTCCAGCCTCT,5' UTR,11,104333229,104442291,109063,2,Kansl1-205,17050,Kansl1-205;Kansl1-204;Kansl1-201;Kansl1-203;Kansl1-206,Kansl1;Kansl1;Kansl1;Kansl1;Kansl1,0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,11,76719,ENSMUSG00000018412,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
26170,cg04265065,-0.00000237,0.00000208,-1.13958033,0.255340943,loss,ns,0.00000283,0.00000354,0.800957327,0.423769794,pos,ns,0.001839688,0.001036538,1.774839807,0.076905593,pos,ns,1.114042075,-0.000016,0.0000356,-0.448848752,0.653854366,neg,ns,0.076975779,Lmo4,Lmo4_Promoter,3,144205595,144205644,144205595,144205596,50,-,CGGATTGTTCAGGCGGAATAATAAAACCTGCCAATCCGGGGAAGGACAAA,Promoter (<=1kb),3,144188530,144205220,16691,2,Lmo4-201,-424,Lmo4-203;Lmo4-201;Lmo4-202;Lmo4-207;Lmo4-208;Lmo4-205;Lmo4-204,Lmo4;Lmo4;Lmo4;Lmo4;Lmo4;Lmo4;Lmo4,0;0;0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,5,54,16911,ENSMUSG00000028266,conserved gene and region,3,144205552,144205890,339,*,339,40,0.734513274,0.888597641,0.1179941,8.05E-34,CpGisland,TRUE,U1,Pr-A
722,cg09578613,-9.65E-08,0.00000147,-0.06562283,0.947720411,loss,ns,0.000002,0.0000025,0.800950553,0.42377371,pos,ns,0.001277419,0.000731724,1.745767682,0.08184201,pos,ns,1.087023711,-0.0000359,0.0000252,-1.426355189,0.15477213,neg,ns,0.957267189,Nipbl,Nipbl_Exon,15,8293151,8293200,8293151,8293152,50,+,CGCAGGAAGTCCAGTGTTTGTTTTGGATGAAAATGAACTCCTGTTTTTCG,"Exon (Nipbl-201/Nipbl, exon 45 of 47)",15,8290617,8444463,153847,2,Nipbl-201,151263,Nipbl-201,Nipbl,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,19,36,71175,ENSMUSG00000022141,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10946,cg15159458,-0.00000269,0.00000126,-2.128202459,0.034108847,loss,ns,-0.00000172,0.00000215,-0.800948695,0.423774784,neg,ns,-0.001956794,0.000628435,-3.113756984,0.00201963,neg,ns,2.694728082,0.0000494,0.0000216,2.285408862,0.022963755,pos,ns,0.977364574,Cyfip1,Cyfip1_Exon,7,55898304,55898353,55898352,55898353,50,+,AGAAGTAGCCTTGAGGGGCCCACCATATTGGACATAGAAAAATTTCATCG,"Exon (Cyfip1-201/Cyfip1, exon 16 of 31)",7,55842071,55932602,90532,1,Cyfip1-201,56233,Cyfip1-201;Cyfip1-202;Cyfip1-207;Cyfip1-203;Cyfip1-212;Cyfip1-209;Cyfip1-205;Cyfip1-206;Gm17907-201,Cyfip1;Cyfip1;Cyfip1;Cyfip1;Cyfip1;Cyfip1;Cyfip1;Cyfip1;Gm17907,0;0;0;0;0;0;0;0;4958,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,20430,ENSMUSG00000030447,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10378,cg19111172,0.0000101,0.00000159,6.385114576,6.25E-10,gain,yes,-0.00000216,0.00000269,-0.800748085,0.42389076,neg,ns,-0.000322278,0.000789239,-0.408340051,0.683305946,neg,ns,0.1653848,0.0000321,0.0000271,1.18339805,0.237558126,pos,ns,0.045162,Creb5,Creb5_fiveUTR,6,53287256,53287305,53287256,53287257,50,+,CGTGACGTCACCGGGGGGGTGATGTAATGCACTCTAAATAGAATGTATTG,Promoter (<=1kb),6,53287270,53391409,104140,1,Creb5-214,0,Creb5-214;Creb5-203;Creb5-213;Creb5-208;Creb5-211;Creb5-210;Creb5-209;Creb5-204;Creb5-207;Creb5-215;Creb5-202,Creb5;Creb5;Creb5;Creb5;Creb5;Creb5;Creb5;Creb5;Creb5;Creb5;Creb5,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,7,12,231991,ENSMUSG00000053007,conserved gene but different region,6,53287053,53287268,216,*,216,28,0.703703704,1.047272727,0.12962963,4.44E-25,CpGisland,TRUE,U3,Pr-B
1012,cg00027030,-0.000000642,0.00000237,-0.271337517,0.78631205,loss,ns,0.00000322,0.00000402,0.80067498,0.423933028,pos,ns,0.001051345,0.001177797,0.892636286,0.372744365,pos,ns,0.428588913,-0.0000332,0.0000405,-0.820352957,0.412645262,neg,ns,0.956410078,Grm1,Grm1_Exon,10,10719343,10719392,10719343,10719344,50,-,CGGACATTCCTCTCAGGCTTGGCAATAATGATGTACATCTTGGGAGTGAA,"Exon (Grm1-201/Grm1, exon 8 of 9)",10,10686059,11082356,396298,2,Grm1-201,362964,Grm1-201;Grm1-203;Grm1-202;Grm1-205,Grm1;Grm1;Grm1;Grm1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,7,14816,ENSMUSG00000019828,conserved gene and region,10,10719227,10719357,131,*,131,9,0.58778626,0.796621622,0.06870229,0.00000851,CpGisland,TRUE,U15,NS
10214,cg20953704,0.000073,0.00000606,12.03739096,1.22E-27,gain,yes,-0.00000824,0.0000103,-0.800644917,0.423950411,neg,ns,0.00711464,0.003016555,2.358531276,0.018967839,pos,ns,1.721982155,-0.0000462,0.000103739,-0.444949271,0.656666928,neg,ns,0.131573908,Hoxa11,Hoxa11_Exon,6,52245490,52245539,52245490,52245491,50,-,CGGGGGTGCCATTTAGTGGCGGGCTCAATGGCGTACTCTCTGAAGGTCAC,Promoter (<=1kb),6,52242106,52245810,3705,2,Hoxa11-201,271,Hoxa10-201;Hoxa10-204;Hoxa11-201;Hoxa11-202,Hoxa10;Hoxa10;Hoxa11;Hoxa11,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,15,18,15396,ENSMUSG00000038210,mapped to different genes,6,52244948,52245549,602,*,602,70,0.674418605,1.022616968,0.11627907,2.62E-58,CpGisland,TRUE,NA,NRS
12790,cg15561172,-1.42E-08,0.00000367,-0.003859237,0.996923264,loss,ns,0.000005,0.00000624,0.800584366,0.423985423,pos,ns,-0.000459979,0.001828477,-0.251563993,0.801544776,neg,ns,0.096072212,0.0000833,0.0000629,1.324077761,0.18645267,pos,ns,0.946627792,Rsrc1,Rsrc1_Intron,3,67191897,67191946,67191897,67191898,50,+,CGAAGATGAGAGGTAAATTAATGCACTGGGTTTCCATCTCAGCTTCATGC,"Intron (Rsrc1-206/Rsrc1, intron 5 of 9)",3,66981390,67356559,375170,1,Rsrc1-206,210507,Rsrc1-206;Rsrc1-203;Rsrc1-202;Rsrc1-201;Rsrc1-209;Rsrc1-205,Rsrc1;Rsrc1;Rsrc1;Rsrc1;Rsrc1;Rsrc1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,37,66880,ENSMUSG00000034544,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16834,cg18942175,0.00000361,0.00000233,1.552718613,0.121510658,gain,ns,-0.00000316,0.00000395,-0.800479316,0.424046169,neg,ns,0.000709802,0.001158263,0.612816314,0.540447098,pos,ns,0.267246811,-0.0000259,0.0000398,-0.650167013,0.51606587,neg,ns,0.946797676,Cltc,Cltc_Exon,11,86707137,86707186,86707185,86707186,50,-,ATATCTGGGGCATCATAATTATCCAGGCGGTTAATATACTCCATAACACG,"Exon (Cltc-202/Cltc, exon 20 of 32)",11,86694351,86757565,63215,2,Cltc-202,50379,Cltc-202;Cltc-201;Cltc-203;Cltc-205,Cltc;Cltc;Cltc;Cltc,0;0;0;-4707,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,10,67300,ENSMUSG00000047126,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9884,cg17216399,-0.0000167,0.00000824,-2.020364598,0.044205251,loss,ns,-0.0000112,0.000014,-0.800464837,0.424054542,neg,ns,-0.001648044,0.004102032,-0.401762747,0.688135478,neg,ns,0.162326051,-0.00016072,0.000141069,-1.139307451,0.255454526,neg,ns,0.625896666,Gm49908,Gm49908_Intergenic_upstream,17,51358431,51358480,51358479,51358480,50,+,CACTCGGTAGCACTGGTACAAACATTCTCTGGCCAGAGGCAAAACAGCCG,Distal Intergenic,17,51236771,51237062,292,2,Gm49908-201,-121369,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,9,9,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26189,cg08560335,0.00000142,0.00000416,0.341206636,0.733179176,gain,ns,0.00000566,0.00000707,0.799907293,0.424377039,pos,ns,0.003917683,0.002071162,1.891538858,0.059484424,pos,ns,1.225596743,-0.000124093,0.0000712,-1.742214762,0.082462622,neg,ns,0.912003131,Gm5857,Gm5857_Intergenic_downstream,3,144327472,144327521,144327472,144327473,50,-,CGCTTTGGTCTGCACAGCCTGTAGCAGCAAATTTACACTTCAAAAAGCAG,Distal Intergenic,3,144427180,144427672,493,2,Gm5857-201,100200,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,9,545572,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23267,cg23174992,-0.00000137,0.0000025,-0.548929649,0.583448879,loss,ns,-0.0000034,0.00000425,-0.799885182,0.424389832,neg,ns,0.000431123,0.001243885,0.34659356,0.729131826,pos,ns,0.137193945,0.0000134,0.0000428,0.312494584,0.754874781,pos,ns,0.963978277,Eri3,Eri3_Exon,4,117637455,117637504,117637455,117637456,50,+,CGCTCCTACCTGAACCGGAGCAAAAAGCCAAGGGTAAAGCAGACACAAAT,"Exon (Eri3-203/Eri3, exon 1 of 3)",4,117550365,117674297,123933,1,Eri3-201,87090,Eri3-201;Eri3-206;Eri3-203,Eri3;Eri3;Eri3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,97,140546,ENSMUSG00000033423,conserved gene but different region,4,117637294,117637471,178,*,178,15,0.634831461,0.841740227,0.084269663,1.21E-10,CpGisland,TRUE,U11,Tr-P
9068,cg06132693,0.0000921,0.00000782,11.77011763,1.10E-26,gain,yes,0.0000106,0.0000133,0.799746482,0.424470083,pos,ns,0.024371129,0.003893217,6.259894387,1.28E-09,pos,ns,8.892320095,-0.000713862,0.000133887,-5.331805742,0.000000188,neg,yes,0.106328178,Cnnm2,Cnnm2_Exon,19,46762693,46762742,46762741,46762742,50,-,GGTGCGCAGGCAGGGCAACTACCTGCTGTGCTCACTGCTGCTGGGCAACG,"Exon (Cnnm2-202/Cnnm2, exon 1 of 8)",19,46761596,46880192,118597,1,Cnnm2-202,1097,Cnnm2-202;Cnnm2-201;Cnnm2-203,Cnnm2;Cnnm2;Cnnm2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,8,94219,ENSMUSG00000064105,conserved gene and region,19,46762560,46762882,323,*,323,24,0.622291022,0.767524753,0.074303406,1.81E-15,CpGisland,TRUE,NA,NRS
23237,cg06828322,-0.00000523,0.00000217,-2.415511401,0.016291238,loss,ns,-0.00000294,0.00000368,-0.79965117,0.424525235,neg,ns,0.000485871,0.0010781,0.450673694,0.65253979,pos,ns,0.185393001,-0.0000425,0.0000371,-1.146249898,0.252575778,neg,ns,0.946049199,Eri3,Eri3_Intron,4,117576454,117576503,117576502,117576503,50,+,TGGCAATTCGAATTTGCAGCCAGCCAGGGCTTGGCAATAAATTTAACCCG,"Intron (Eri3-201/Eri3, intron 3 of 8)",4,117550365,117674297,123933,1,Eri3-201,26089,Eri3-201;Eri3-205;Eri3-206,Eri3;Eri3;Eri3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,82,97,140546,ENSMUSG00000033423,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
486,cg05482230,-0.000000559,0.000000358,-1.562115532,0.119281021,loss,ns,-0.000000486,0.000000608,-0.799582132,0.424565187,neg,ns,0.000201886,0.000178248,1.13261234,0.258252344,pos,ns,0.587955728,-0.0000121,0.00000613,-1.971209532,0.04958907,neg,ns,0.010356581,Epc1,Epc1_fiveUTR,18,6490579,6490628,6490579,6490580,50,+,CGTCTAGCGCCCGCGCCCGAAACGACAGTTTACTCATCTCAGGCGCAGCA,5' UTR,18,6435951,6516108,80158,2,Epc1-203,25480,Epc1-203;Epc1-201;Epc1-202,Epc1;Epc1;Epc1,0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,8,13831,ENSMUSG00000024240,conserved gene but different region,18,6490174,6491299,1126,*,1126,149,0.703374778,1.070212481,0.132326821,4.64E-133,CpGisland,TRUE,U1,Pr-A
22601,cg00140840,-0.00000317,0.00000144,-2.194556902,0.028936953,loss,ns,0.00000196,0.00000245,0.799498645,0.424613503,pos,ns,0.000805928,0.000717972,1.122505922,0.262516025,pos,ns,0.58084418,-0.0000195,0.0000247,-0.790217482,0.430004829,neg,ns,0.039273,Thap2,Thap2_Exon,10,115384204,115384253,115384252,115384253,50,-,CCTGTGGAAGCTGATGTTAATGTGCTTGTTGTAGGTAGTGGCACAGCCCG,Promoter (<=1kb),10,115368404,115384435,16032,2,Thap2-202,182,Thap2-202;Thap2-201;Thap2-203;Zfc3h1-201,Thap2;Thap2;Thap2;Zfc3h1,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,66816,ENSMUSG00000020137,mapped to different genes,10,115384252,115384431,180,*,180,23,0.688888889,1.078125,0.127777778,1.71E-20,CpGisland,TRUE,U1,Pr-A
6375,cg20650220,-0.00000754,0.00000252,-2.986169846,0.003050139,loss,ns,0.00000343,0.00000429,0.799395288,0.424673322,pos,ns,0.001914924,0.001255899,1.524744068,0.128342459,pos,ns,0.891629645,-0.0000699,0.0000432,-1.618362792,0.106601383,neg,ns,0.943312659,Pknox2,Pknox2_Intron,9,37058308,37058357,37058308,37058309,50,+,CGAAAGCATGACTTAGCTTCATATAAGTGGGAAAAAAATGCAAATTATAC,"Intron (Pknox2-207/Pknox2, intron 1 of 10)",9,36890982,37083309,192328,2,Pknox2-207,24952,Pknox2-207;Pknox2-201;Pknox2-202;Pknox2-206;Pknox2-204;Pknox2-205;Pknox2-208;Pknox2-210;Pknox2-209;Pknox2-212;Pknox2-211,Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,47,208076,ENSMUSG00000035934,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18683,cg05166871,0.0000198,0.0000122,1.628397173,0.104456506,gain,ns,0.0000165,0.0000207,0.799372471,0.424686528,pos,ns,0.00018641,0.006061178,0.030754772,0.975484901,pos,ns,0.010779449,0.000273142,0.000208443,1.310389427,0.191034177,pos,ns,0.269470746,Skap1,Skap1_Intron,11,96736234,96736283,96736234,96736235,50,-,CGCAGAATTCAAGTTTGAATAGAGCAGGGAAAAGGTGTTTGAAAGGCCTG,"Intron (Skap1-204/Skap1, intron 11 of 12)",11,96464593,96758941,294349,1,Skap1-204,271641,Skap1-204;Skap1-203;Skap1-209;Skap1-201,Skap1;Skap1;Skap1;Skap1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,40,46,78473,ENSMUSG00000057058,conserved gene and region,11,96736098,96736244,147,*,147,12,0.585034014,0.962356792,0.081632653,1.97E-08,CpGisland,TRUE,U9,En-Pp
27128,cg00038038,0.00000605,0.000021,0.288790114,0.772935013,gain,ns,-0.0000285,0.0000356,-0.79932773,0.424712425,neg,ns,-0.021156578,0.010433833,-2.027689898,0.043447005,neg,ns,1.362040158,0.000768823,0.000358819,2.142649869,0.032919707,pos,ns,0.579456779,Pappa2,Pappa2_Intron,1,158960726,158960775,158960726,158960727,50,-,CGGAAAGGTGGGCTGGATTCAAATAATCTGTCAAGTGAATCAGATCAAAA,"Intron (Pappa2-203/Pappa2, intron 2 of 2)",1,158958127,158980490,22364,2,Pappa2-203,19715,Pappa2-202;Pappa2-206;Pappa2-203,Pappa2;Pappa2;Pappa2,0;-345;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,4,23850,ENSMUSG00000073530,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26589,cg01839280,-0.0000105,0.00000477,-2.195526026,0.028866742,loss,ns,0.00000648,0.00000811,0.799173068,0.424801952,pos,ns,0.003532614,0.002376359,1.4865654,0.138145958,pos,ns,0.859661819,-0.000137268,0.0000817,-1.679673275,0.09402837,neg,ns,0.897057727,Casz1,Casz1_Intron,4,148941878,148941927,148941878,148941879,50,-,CGGATATAATTTCAGAGCCACTGCTTACAAATTAATTTAATGAACTGGCT,"Intron (Casz1-201/Casz1, intron 13 of 15)",4,148804429,148945129,140701,1,Casz1-201,137449,Casz1-201;Casz1-202;Casz1-204,Casz1;Casz1;Casz1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,94,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16257,cg25404477,0.0000908,0.0000113,8.003200464,2.45E-14,gain,yes,-0.0000154,0.0000193,-0.799112214,0.424837181,neg,ns,0.010894206,0.005646864,1.92924874,0.054612527,pos,ns,1.262707729,-0.000211147,0.000194195,-1.087292459,0.277752237,neg,ns,0.10219234,Bnc2,Bnc2_fiveUTR,4,84674981,84675030,84675029,84675030,50,-,GGCATGCTGGTTGTCAAGTGCAGCCCCCGCCTCTTGGTCTCCTCTTAGCG,Promoter (<=1kb),4,84293214,84674996,381783,2,Bnc2-206,0,Bnc2-201;Bnc2-202;Bnc2-214;Bnc2-215;Bnc2-206;Bnc2-211;Bnc2-217;Bnc2-207;Bnc2-203;Bnc2-209;Bnc2-204;Bnc2-210,Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,8,91,242509,ENSMUSG00000028487,conserved gene and region,4,84674836,84675874,1039,*,1039,124,0.716073147,0.931064137,0.119345525,2.14E-104,CpGisland,TRUE,U3,Pr-B
3700,cg22560467,-0.0000155,0.00000292,-5.306679965,0.000000213,loss,yes,0.00000396,0.00000496,0.799001872,0.424901063,pos,ns,-0.002457985,0.001451674,-1.693206868,0.09142067,neg,ns,1.038955598,0.0000167,0.0000499,0.333957397,0.738637505,pos,ns,0.946313036,Pou2f2,Pou2f2_threeUTR,7,25087436,25087485,25087484,25087485,50,-,TGTACAATGAACAAGCAGATTGGAGTTAAGAACACTGAAACACTAACCCG,3' UTR,7,25087344,25132488,45145,2,Pou2f2-203,45003,Pou2f2-203;Pou2f2-209;Pou2f2-201;Zfp574-202;Zfp574-201,Pou2f2;Pou2f2;Pou2f2;Zfp574;Zfp574,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,29,18987,ENSMUSG00000008496,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12653,cg24269340,-0.0000195,0.0000117,-1.670412458,0.09584707,loss,ns,0.0000159,0.0000199,0.798721631,0.425063333,pos,ns,-0.003309762,0.005819015,-0.568783937,0.569914601,neg,ns,0.244190216,-0.0000413,0.000200115,-0.206552583,0.836494891,neg,ns,0.883451856,Map2,Map2_Exon,1,66416462,66416511,66416462,66416463,50,-,CGGGAGAGGCAGAATTTCCACTCCTGAAAGAAAAGTAGCTAAAAAGGAAC,"Exon (Map2-204/Map2, exon 8 of 15)",1,66175313,66442028,266716,1,Map2-206,241149,Map2-206;Map2-205;Map2-207;Map2-201;Map2-204;Map2-225;Map2-202;Map2-203;Map2-223;Map2-215;Map2-217;Map2-216;Map2-213;Map2-220;Map2-221;Map2-222,Map2;Map2;Map2;Map2;Map2;Map2;Map2;Map2;Map2;Map2;Map2;Map2;Map2;Map2;Map2;Map2,0;0;0;0;0;0;0;0;35950;35760;0;29484;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,3,17756,ENSMUSG00000015222,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2861,cg22878382,0.0000944,0.0000121,7.806923137,9.10E-14,gain,yes,0.0000164,0.0000206,0.798627259,0.425117987,pos,ns,0.013695061,0.006020738,2.274648092,0.023609922,pos,ns,1.626905454,-0.000423077,0.000207053,-2.043329792,0.041865001,neg,ns,0.172250398,Zfp503,Zfp503_Promoter,14,21994520,21994569,21994520,21994521,50,+,CGAGACACCAAATACTTCGTATCGCCTTTAAATGGGAACACATTTTCCGC,Promoter (4-5kb),14,21983959,21989601,5643,2,Zfp503-201,-4919,Zfp503-201,Zfp503,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,18,27,218820,ENSMUSG00000039081,mapped to different genes,14,21994122,21994568,447,*,447,26,0.579418345,0.69759904,0.058165548,4.29E-14,CpGisland,TRUE,U3,Pr-B
11759,cg17605580,-0.00000265,0.00000121,-2.183251388,0.029766993,loss,ns,0.00000165,0.00000206,0.79861974,0.425122341,pos,ns,0.001410621,0.000603918,2.335780567,0.020140066,pos,ns,1.695939118,-0.0000443,0.0000208,-2.133044446,0.033706266,neg,ns,0.053349312,Mbnl1,Mbnl1_Intron,3,60501792,60501841,60501792,60501793,50,+,CGCATGACATGTTTAGCTGGGCTGCCTTATATGGAGAGTGCTGTATTTCA,"Intron (Mbnl1-222/Mbnl1, intron 2 of 2)",3,60472830,60595764,122935,1,Mbnl1-222,28962,Mbnl1-222;Mbnl1-221;Mbnl1-216;Mbnl1-220;Mbnl1-211;Mbnl1-204;Mbnl1-201;Mbnl1-209;Mbnl1-202;Mbnl1-225;Mbnl1-217;Mbnl1-203;Mbnl1-218,Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,36,56758,ENSMUSG00000027763,conserved gene but different region,3,60500947,60501793,847,*,847,116,0.748524203,0.980901513,0.136953955,8.77E-106,CpGisland,TRUE,U1,Pr-A
4846,cg18007006,-0.000000124,0.00000124,-0.100043902,0.920374139,loss,ns,-0.00000168,0.0000021,-0.798410057,0.425243789,neg,ns,0.000398477,0.000616411,0.646447395,0.518467954,pos,ns,0.285278082,0.00000344,0.0000212,0.16224592,0.871217901,pos,ns,0.034668349,Usf2,Usf2_Exon,7,30955949,30955998,30955949,30955950,50,+,CGCCCTGGCCGTCCAGCTGACCATCAGTCACCTGGACTACGCGGTATGTC,Promoter (<=1kb),7,30945248,30956803,11556,2,Usf2-201,805,Lsr-202;Lsr-201;Lsr-203;Lsr-205;Lsr-204;Usf2-201;Usf2-205;Usf2-208;Usf2-203;Usf2-209;Usf2-210;Usf2-211;Usf2-202;Usf2-207;Usf2-204;Usf2-206,Lsr;Lsr;Lsr;Lsr;Lsr;Usf2;Usf2;Usf2;Usf2;Usf2;Usf2;Usf2;Usf2;Usf2;Usf2;Usf2,17428;17466;17429;17324;17417;0;0;0;0;0;0;0;0;-499;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,22282,ENSMUSG00000058239,conserved gene but different region,7,30955786,30957106,1321,*,1321,161,0.774413323,0.813311664,0.121877366,5.10E-137,CpGisland,TRUE,U6,En-Sp
22929,cg18223258,0.0000393,0.00000535,7.336474963,1.93E-12,gain,yes,-0.00000726,0.0000091,-0.798392459,0.425253982,neg,ns,0.004379124,0.002665008,1.643193529,0.101356733,pos,ns,0.994147396,-0.000122992,0.0000916,-1.341984854,0.180582978,neg,ns,0.045449288,Isl1,Isl1_Intergenic_downstream,13,116294093,116294142,116294093,116294094,50,+,CGCGACCTCACAAGTCAAGCGCCTTGTTTGGATTAGCCCTCCAGATCTGC,Distal Intergenic,13,116299395,116303351,3957,2,Isl1-203,9209,Isl1-201,Isl1,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,14,16392,ENSMUSG00000042258,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
18858,cg22190090,-0.00000265,0.0000016,-1.657882557,0.098352699,loss,ns,0.00000216,0.00000271,0.798272136,0.425323684,pos,ns,0.00064105,0.000794151,0.807215005,0.420161524,pos,ns,0.37658372,0.0000201,0.0000273,0.735220637,0.462760981,pos,ns,0.047041286,Pip4k2b,Pip4k2b_Exon,11,97744505,97744554,97744553,97744554,50,+,TCACTTTCTGGCACACGAAATGCTTCTTCTTGGTCTTGGTCTTGCTGGCG,Promoter (<=1kb),11,97715157,97744704,29548,2,Pip4k2b-201,150,Cwc25-203;Cwc25-201;Cwc25-204;Pip4k2b-201,Cwc25;Cwc25;Cwc25;Pip4k2b,6616;22002;8156;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,108083,ENSMUSG00000018547,conserved gene and region,11,97744124,97745191,1068,*,1068,111,0.699438202,0.850135536,0.103932584,4.53E-86,CpGisland,TRUE,U1,Pr-A
5941,cg12366240,0.000000697,0.00000287,0.242656919,0.808431652,gain,ns,-0.00000389,0.00000488,-0.798227961,0.425349275,neg,ns,0.001642443,0.001429282,1.149138297,0.251384795,pos,ns,0.599660993,-0.000173691,0.0000492,-3.533688251,0.000472203,neg,ns,0.934500891,Ahr,Ahr_Intron,12,35522772,35522821,35522820,35522821,50,-,TTTCCTTTCTAACAAGATTGTATGATTACTCGTTTATATTGTTCTTTCCG,"Intron (Ahr-202/Ahr, intron 2 of 10)",12,35497974,35535038,37065,2,Ahr-202,12217,Ahr-202;Ahr-201;Ahr-203,Ahr;Ahr;Ahr,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,11622,ENSMUSG00000019256,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11421,cg23321679,0.0000149,0.00000326,4.57958267,0.00000676,gain,ns,0.00000442,0.00000553,0.797814314,0.425588953,pos,ns,0.002262608,0.001621481,1.395395828,0.16389527,pos,ns,0.785433581,0.00000268,0.0000558,0.048106533,0.961662317,pos,ns,0.060598495,Ccdc33,Ccdc33_Intron,9,58061325,58061374,58061373,58061374,50,-,TAGTAATTCAGGAGGCCTGATGCAATTTTCTCCCTGATAAGGGTGTCTCG,"Intron (Ccdc33-201/Ccdc33, intron 10 of 18)",9,58028677,58102297,73621,2,Ccdc33-201,40923,Ccdc33-201;Ccdc33-203;Ccdc33-210;Ccdc33-204;Stra6-210,Ccdc33;Ccdc33;Ccdc33;Ccdc33;Stra6,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,8,382077,ENSMUSG00000037716,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25447,cg13084728,0.00000093,0.00000149,0.623502123,0.533413087,gain,ns,0.00000202,0.00000253,0.797813098,0.425589658,pos,ns,0.001500537,0.000742462,2.021027934,0.044136129,pos,ns,1.355205758,-0.0000203,0.0000255,-0.793621084,0.428023091,neg,ns,0.969044786,Zfp281,Zfp281_threeUTR,1,136628386,136628435,136628386,136628387,50,-,CGCATGGGAATTCTGTACGTTATCACTGTAATGGAATATCCAATTTACAG,3' UTR,1,136624901,136630053,5153,1,Zfp281-201,3485,Zfp281-201;Zfp281-202,Zfp281;Zfp281,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,7,226442,ENSMUSG00000041483,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
19886,cg11617248,-0.00000882,0.0000042,-2.099454029,0.036585135,loss,ns,-0.00000569,0.00000713,-0.797785062,0.425605906,neg,ns,0.000455892,0.00209004,0.218126144,0.827474343,pos,ns,0.082245463,0.0000415,0.0000719,0.576991993,0.564363625,pos,ns,0.891943595,Gm45837,Gm45837_Exon,7,101475378,101475427,101475426,101475427,50,+,GTATTCTACAGTGCACGTGTCTCCAGTGTGGCTCGGAGGCTGGAGACGCG,"Exon (Mir139-201/Mir139-201, exon 1 of 1)",7,101410886,101512819,101934,1,Gm45837-201,64492,Gm45837-201;Pde2a-201;Pde2a-212;Pde2a-202;Pde2a-209;Pde2a-204;Pde2a-206;Pde2a-205;Pde2a-211;Pde2a-207;Pde2a-210,Gm45837;Pde2a;Pde2a;Pde2a;Pde2a;Pde2a;Pde2a;Pde2a;Pde2a;Pde2a;Pde2a,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,6,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
27595,cg02525396,-0.00000459,0.00000176,-2.601980372,0.009713723,loss,ns,-0.00000239,0.000003,-0.797522946,0.425757827,neg,ns,-0.000729153,0.000878005,-0.830466292,0.406914312,neg,ns,0.390497034,-0.0000385,0.0000302,-1.27466358,0.203382937,neg,ns,0.033793685,Tomm40l,Tomm40l_fiveUTR,1,171222417,171222466,171222417,171222418,50,-,CGGTCATCTTGATGGGGGCAGCCATCTTGAGTGATGGCAGAACTGCAGCT,Promoter (<=1kb),1,171217802,171222448,4647,2,Tomm40l-202,0,Apoa2-204;Apoa2-201;Apoa2-203;Apoa2-202;Nr1i3-201;Nr1i3-202;Nr1i3-208;Nr1i3-205;Nr1i3-204;Nr1i3-203;Nr1i3-207;Nr1i3-206;Tomm40l-201;Tomm40l-203;Tomm40l-202;Tomm40l-206;Tomm40l-205;Tomm40l-207;Tomm40l-208;Tomm40l-204,Apoa2;Apoa2;Apoa2;Apoa2;Nr1i3;Nr1i3;Nr1i3;Nr1i3;Nr1i3;Nr1i3;Nr1i3;Nr1i3;Tomm40l;Tomm40l;Tomm40l;Tomm40l;Tomm40l;Tomm40l;Tomm40l;Tomm40l,-2588;-2616;-2618;-2625;8447;8446;0;8423;8415;8396;8396;8068;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,1,641376,ENSMUSG00000005674,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
12108,cg04695023,-0.000000988,0.000000587,-1.68373284,0.093239941,loss,ns,-0.000000795,0.000000997,-0.797507179,0.425766967,neg,ns,-0.000454106,0.000292142,-1.554401557,0.12110895,neg,ns,0.91682376,-0.00000975,0.00001,-0.970794466,0.332407475,neg,ns,0.015670608,Pias1,Pias1_Exon,9,62980810,62980859,62980810,62980811,50,+,CGGCCGAATATTAGAAGTGAATTCGAGCTGCGCTTTACCTTTAGTTCCGC,Promoter (<=1kb),9,62878368,62980879,102512,2,Pias1-201,20,Pias1-201;Pias1-202;Pias1-205,Pias1;Pias1;Pias1,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,12,56469,ENSMUSG00000032405,conserved gene but different region,9,62980517,62981139,623,*,623,66,0.706260032,0.90840403,0.105939005,4.79E-52,CpGisland,TRUE,NA,NRS
21612,cg03952104,-0.00000054,0.00000362,-0.149199573,0.881493171,loss,ns,0.00000491,0.00000615,0.797418505,0.42581837,pos,ns,0.000236376,0.00180246,0.131140735,0.895749042,pos,ns,0.047813647,-0.0000207,0.000062,-0.333998019,0.738606881,neg,ns,0.525578154,Zfhx3,Zfhx3_Intron,8,108543468,108543517,108543468,108543469,50,+,CGTAAATCAAGTTTAATAGTGTCCCAGAAAGTGTAAAAGCAATCAAAAAT,"Intron (Zfhx3-204/Zfhx3, intron 4 of 15)",8,107942644,108961630,1018987,1,Zfhx3-204,600824,Zfhx3-204,Zfhx3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,114,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16952,cg24610860,0.0000295,0.00000846,3.492237539,0.000548612,gain,ns,0.0000115,0.0000144,0.797416465,0.425819552,pos,ns,0.008552062,0.004210203,2.031270819,0.043080378,pos,ns,1.365720498,-0.0000907,0.000144789,-0.626537139,0.531423778,neg,ns,0.246692382,4933402J07Rik,4933402J07Rik_Intergenic_downstream,8,87660409,87660458,87660409,87660410,50,+,CGTGAAAAGCTCTTAAACCCCCCGCTGTATTTTTAATGGGGGCAGTGACT,Downstream (1-2kb),8,87563853,87589424,25572,1,4933402J07Rik-201,96556,Zfp423-203;Zfp423-202;Zfp423-201,Zfp423;Zfp423;Zfp423,0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,5,5,330820,ENSMUSG00000069971,mapped to different genes,8,87660067,87660482,416,*,416,27,0.622596154,0.680809795,0.064903846,8.30E-16,CpGisland,TRUE,U13,Hc-P
3864,cg22709378,-0.0000168,0.0000128,-1.314475737,0.189657849,loss,ns,0.0000173,0.0000217,0.79736093,0.425851747,pos,ns,0.013570149,0.006361119,2.133296001,0.033685463,pos,ns,1.472557484,-0.000670141,0.000218758,-3.063384279,0.002380527,neg,ns,0.716139915,Celf4,Celf4_Intron,18,25633046,25633095,25633094,25633095,50,+,GAAACACCTTTCATATCACTTTATCTAGAGAGCTTGAATTGACAGCCGCG,"Intron (Celf4-202/Celf4, intron 2 of 12)",18,25477632,25753983,276352,2,Celf4-202,120888,Celf4-202;Celf4-201;Celf4-203;Celf4-207;Celf4-206;Celf4-209,Celf4;Celf4;Celf4;Celf4;Celf4;Celf4,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,59,108013,ENSMUSG00000024268,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20357,cg11275974,0.000172418,0.0000106,16.20576921,3.27E-43,gain,yes,-0.0000144,0.0000181,-0.797287626,0.425894245,neg,ns,0.015341097,0.005295296,2.897117817,0.004034193,pos,ns,2.394243331,-0.000282212,0.000182105,-1.549722908,0.122228302,neg,ns,0.374275643,Hoxc5,Hoxc5_Intron,15,103010084,103010133,103010132,103010133,50,-,AGAGAGTTTTTTATGGCCCCATAAAAACAATCACGCTCGTCTCCTCACCG,"Intron (Hoxc5-202/Hoxc5, intron 1 of 1)",15,102967443,103015676,48234,1,Hoxc5-202,42641,Hoxc5-202;Hoxc5-201;Hoxc6-202;Hoxc6-203;Hoxc6-201,Hoxc5;Hoxc5;Hoxc6;Hoxc6;Hoxc6,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,Intron,46,134,15424,ENSMUSG00000022485,mapped to different genes,15,103009987,103010218,232,*,232,17,0.556034483,0.969041769,0.073275862,5.22E-11,CpGisland,TRUE,U13,Hc-P
9176,cg19088137,0.0000109,0.00000821,1.330545399,0.184316539,gain,ns,0.0000111,0.0000139,0.797229078,0.42592819,pos,ns,0.011423865,0.004084545,2.79685105,0.005482796,pos,ns,2.260997898,-0.000198276,0.000140467,-1.411544833,0.159086912,neg,ns,0.173822206,Sgcd,Sgcd_fiveUTR,11,47379411,47379460,47379459,47379460,50,-,GCAGCCAAGTCCCTGCCCATGCCTGAAGAATTTCCTGAACAGCATTCCCG,5' UTR,11,46896253,47578965,682713,2,Sgcd-202,199505,Sgcd-202;Sgcd-201;Sgcd-204,Sgcd;Sgcd;Sgcd,0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,1,24052,ENSMUSG00000020354,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
9636,cg04604747,0.0000621,0.00000526,11.81663068,7.50E-27,gain,yes,-0.00000712,0.00000893,-0.797040767,0.426037379,neg,ns,0.009330906,0.002616785,3.565790288,0.000420009,pos,ns,3.376741555,-0.000130292,0.00009,-1.447836659,0.148673308,neg,ns,0.091072957,Dbx1,Dbx1_Promoter,7,49636913,49636962,49636961,49636962,50,-,ACAGCTCTGACAATGAAGTTCAACAAAGTTCTCCACTCGAGCTTCATTCG,Promoter (<=1kb),7,49631499,49636849,5351,2,Dbx1-201,-113,Dbx1-201,Dbx1,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,8,18,13172,ENSMUSG00000030507,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
4206,cg16588040,-0.0000311,0.000012,-2.590262332,0.010043282,loss,ns,0.0000163,0.0000204,0.79692819,0.426102664,pos,ns,-0.013170916,0.005981607,-2.201902525,0.02840844,neg,ns,1.54655261,0.000306001,0.000205707,1.487558651,0.137883765,pos,ns,0.595835976,Gm7729,Gm7729_Intergenic_upstream,18,27511381,27511430,27511381,27511382,50,-,CGTTAGCCCTCTGCTCGTTAACTACTTAGCTCTGATTAGCTCTGCTCACT,Distal Intergenic,18,27598644,27599756,1113,1,Gm7729-201,-87263,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,22,665646,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19238,cg18339796,-0.0000207,0.00000548,-3.782185826,0.000186519,loss,ns,0.00000742,0.00000931,0.796925449,0.426104253,pos,ns,-0.004155419,0.002727343,-1.523614216,0.128624564,neg,ns,0.890676083,0.0000777,0.0000938,0.828582145,0.407978375,pos,ns,0.096127185,Kmt2d,Kmt2d_threeUTR,15,98831865,98831914,98831865,98831866,50,+,CGTTGTTACGAAGGACCAACCTTGCTGTACAGGATACACACAACACAAAA,3' UTR,15,98831669,98871183,39515,2,Kmt2d-202,39269,Kmt2d-202;Kmt2d-201;Kmt2d-204;Prkag1-201;Prkag1-206;Prkag1-203;Prkag1-205,Kmt2d;Kmt2d;Kmt2d;Prkag1;Prkag1;Prkag1;Prkag1,0;0;0;-344;-894;-411;-377,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,16,381022,ENSMUSG00000048154,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18382,cg08027747,0.00000719,0.00000254,2.828021574,0.004988559,gain,ns,0.00000344,0.00000432,0.79682391,0.426163141,pos,ns,-0.001185656,0.00126481,-0.937417754,0.349273451,neg,ns,0.456834425,0.0000946,0.0000435,2.175394426,0.030355888,pos,ns,0.0595181,Ppp1r9b,Ppp1r9b_threeUTR,11,95006825,95006874,95006873,95006874,50,+,ATGTATGTATTGTTCCCGGTTTTGTACGGACCATGCCCTCTGTCAGGTCG,3' UTR,11,94991035,95006899,15865,1,Ppp1r9b-201,15790,Ppp1r9b-201;Ppp1r9b-202;Samd14-201;Samd14-203;Samd14-202,Ppp1r9b;Ppp1r9b;Samd14;Samd14;Samd14,0;0;-3005;-3008;-3407,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,2,217124,ENSMUSG00000038976,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25341,cg19707231,-0.00000381,0.00000306,-1.244480812,0.21426271,loss,ns,0.00000415,0.00000521,0.796667438,0.426253898,pos,ns,-0.002881327,0.00152539,-1.888911534,0.059836953,neg,ns,1.223030527,0.0000779,0.0000525,1.484938288,0.138576307,pos,ns,0.869154009,Nav1,Nav1_Exon,1,135465846,135465895,135465846,135465847,50,+,CGTGGGGTCTCGGAAGGATCCTGACCGAATCATTCCCTTGGGTCTCTCGG,"Exon (Nav1-201/Nav1, exon 10 of 30)",1,135434580,135585355,150776,2,Nav1-201,119460,Nav1-201;Nav1-202;Nav1-208;Nav1-205;Nav1-209;Nav1-206;Nav1-207,Nav1;Nav1;Nav1;Nav1;Nav1;Nav1;Nav1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,12,215690,ENSMUSG00000009418,mapped to different genes,1,135465776,135465997,222,*,222,16,0.630630631,0.746846089,0.072072072,2.79E-10,CpGisland,TRUE,NA,NRS
59,cg12649486,-0.00000117,0.0000019,-0.616663746,0.537909137,loss,ns,0.00000257,0.00000323,0.796637769,0.426271108,pos,ns,0.000562214,0.000945492,0.594625206,0.552527766,pos,ns,0.257645892,-0.0000307,0.0000325,-0.944468307,0.345665911,neg,ns,0.956364058,Ankib1,Ankib1_Exon,5,3734124,3734173,3734124,3734125,50,+,CGTTGGCAGCAGTTCTCCGGGTTGGACATCCAAGCTTCAAGTAATTTCTC,"Exon (Ankib1-201/Ankib1, exon 6 of 20)",5,3690000,3802925,112926,2,Ankib1-201,68752,Ankib1-201;Ankib1-206;Ankib1-204,Ankib1;Ankib1;Ankib1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,70797,ENSMUSG00000040351,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26769,cg19214235,-0.00000291,0.00000687,-0.424316815,0.671629089,loss,ns,0.00000929,0.0000117,0.796522811,0.426337794,pos,ns,0.002225374,0.003417305,0.651207294,0.515395109,pos,ns,0.287859707,-0.00014637,0.000117521,-1.245478223,0.21389657,neg,ns,0.768407197,Iqsec2,Iqsec2_Exon,X,152211310,152211359,152211310,152211311,50,+,CGGCAGATGATAGGGGAATTCCTAGGGAACCGGCAGAAGCAGTTCAACAG,"Exon (Iqsec2-207/Iqsec2, exon 6 of 15)",20,152144268,152225235,80968,1,Iqsec2-207,67042,Iqsec2-207;Iqsec2-202;Iqsec2-203;Iqsec2-201,Iqsec2;Iqsec2;Iqsec2;Iqsec2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,16,245666,ENSMUSG00000041115,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17669,cg26838924,-0.00000492,0.00000132,-3.73787478,0.000220939,loss,ns,0.00000178,0.00000224,0.796480146,0.426362545,pos,ns,0.001298292,0.00065482,1.982668923,0.048286897,pos,ns,1.316170706,-0.000015,0.0000225,-0.66766022,0.504847236,neg,ns,0.046617039,Ssbp2,Ssbp2_Exon,13,91370942,91370991,91370942,91370943,50,-,CGAGACTGTGTCAGCACAACTTCCGGGATAATGAGAGCTGCTTTGCAGGG,"Exon (A830009L08Rik-201/A830009L08Rik-201, exon 3 of 3)",13,91460283,91688866,228584,1,Ssbp2-209,-89341,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,18,66970,ENSMUSG00000003992,conserved gene and region,13,91370942,91371164,223,*,223,20,0.6367713,0.906504065,0.089686099,1.36E-14,CpGisland,TRUE,U1,Pr-A
7386,cg01039531,0.00000348,0.00000211,1.647361326,0.100497014,gain,ns,-0.00000286,0.00000359,-0.796442776,0.426384226,neg,ns,-0.000938774,0.001051254,-0.893003701,0.372547886,neg,ns,0.428817897,0.0000145,0.0000362,0.400345433,0.689177856,pos,ns,0.947476712,Gm7181,Gm7181_Intergenic_upstream,5,42523532,42523581,42523580,42523581,50,-,TCTTCTGCAAAGAGCACACCAACCTCAATACCCAGCAGACAGCATTTACG,Distal Intergenic,5,42499981,42500414,434,2,Gm7181-201,-23167,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,636612,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10794,cg14193568,0.0000126,0.00000192,6.574472491,2.07E-10,gain,yes,0.0000026,0.00000326,0.796370071,0.426426407,pos,ns,0.000168774,0.000956183,0.176508569,0.860009673,pos,ns,0.065496664,0.0000225,0.0000329,0.685298412,0.493667746,pos,ns,0.05023986,Prr7,Prr7_Exon,13,55472069,55472118,55472069,55472070,50,-,CGGCTTCTGGCTCATCTGGGGTCTCATCGTCCTGCTCTGCTGCTTCTGCA,"Exon (Prr7-201/Prr7, exon 2 of 3)",13,55464267,55473154,8888,1,Prr7-201,7802,Dbn1-201;Dbn1-203;Dbn1-202;Dbn1-206;Prr7-201,Dbn1;Dbn1;Dbn1;Dbn1;Prr7,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,6,432763,ENSMUSG00000034686,conserved gene and region,13,55471446,55473041,1596,*,1596,178,0.713032582,0.884290343,0.111528822,1.30E-143,CpGisland,TRUE,U3,Pr-B
25938,cg05584618,-0.0000416,0.0000119,-3.499909561,0.00053365,loss,ns,0.0000161,0.0000202,0.796352457,0.426436627,pos,ns,0.005656817,0.005919163,0.955678587,0.339979296,pos,ns,0.46854753,-0.000823798,0.00020356,-4.046964279,0.0000656,neg,ns,0.767397427,Unc5c,Unc5c_Intron,3,141509969,141510018,141510017,141510018,50,-,TGAAATGTTTCCACAGTTTATTTTTCTAGGATCTTTTCCATGACTGCTCG,"Intron (Unc5c-202/Unc5c, intron 1 of 15)",3,141465216,141834924,369709,1,Unc5c-202,44753,Unc5c-202;Unc5c-201;Unc5c-206;Unc5c-207;Unc5c-204;Unc5c-205,Unc5c;Unc5c;Unc5c;Unc5c;Unc5c;Unc5c,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,4,22253,ENSMUSG00000059921,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23071,cg15133623,-0.00000139,0.00000157,-0.882545069,0.378165953,loss,ns,0.00000213,0.00000267,0.796321304,0.426454702,pos,ns,0.001111609,0.00078294,1.419789107,0.156673912,pos,ns,0.805003311,-0.0000284,0.0000269,-1.054490837,0.29247941,neg,ns,0.963528196,Rnf220,Rnf220_Intron,4,117276306,117276355,117276306,117276307,50,+,CGCCCTGCTCAGCTGGAGTAGGAGAGAATTATTAAATAAACATCCATACG,"Intron (Rnf220-201/Rnf220, intron 12 of 14)",4,117271463,117497052,225590,2,Rnf220-201,220697,Rnf220-201;Rnf220-203;Rnf220-212;Rnf220-202;Rnf220-205;Rnf220-214;Rnf220-211;Rnf220-209;Rnf220-213,Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9055,cg03001345,0.00000633,0.00000621,1.018859858,0.309063984,gain,ns,-0.0000084,0.0000106,-0.796249422,0.42649641,neg,ns,-0.001675331,0.003091031,-0.541997364,0.588209684,neg,ns,0.23046783,-0.0000872,0.0001063,-0.8203358,0.412655025,neg,ns,0.744604348,Gm8863,Gm8863_Promoter,9,46723945,46723994,46723993,46723994,50,+,TCCTGCAGCTGTCAGGCTTCTTTCCCTGAAGAATATCTCTAATCGCCCCG,Promoter (9-10kb),9,46713233,46714158,926,2,Gm8863-201,-9787,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,20,667890,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26531,cg23521331,-0.00000245,0.00000169,-1.446437881,0.149064739,loss,ns,0.00000229,0.00000287,0.796246891,0.426497878,pos,ns,-0.000151202,0.000842156,-0.179540939,0.857630271,neg,ns,0.066699899,0.0000291,0.000029,1.005215668,0.315576988,pos,ns,0.964194264,Casz1,Casz1_Intron,4,148888365,148888414,148888413,148888414,50,-,TCACATTTTGACTTAATGAAGTGCAACTGCTGAGGGATTTGGGTTCAGCG,"Intron (Casz1-201/Casz1, intron 2 of 15)",4,148804429,148945129,140701,1,Casz1-201,83936,Casz1-201;Casz1-202;Casz1-205,Casz1;Casz1;Casz1,0;0;-967,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,94,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24066,cg15953936,-0.00000608,0.00000824,-0.737238812,0.461534755,loss,ns,-0.0000111,0.000014,-0.796176807,0.426538546,neg,ns,0.004939755,0.004102243,1.204159454,0.229446557,pos,ns,0.639318455,-0.000204943,0.000141076,-1.45271222,0.147315107,neg,ns,0.837382738,Rimklb,Rimklb_Intron,6,122450457,122450506,122450505,122450506,50,+,ACTGCTTATTGCCCAATGGCTCTGAATACATTAAAACACGAACACATACG,"Intron (Rimklb-204/Rimklb, intron 6 of 7)",6,122447296,122466587,19292,2,Rimklb-204,16081,Rimklb-204;Rimklb-202;Rimklb-201;Rimklb-206,Rimklb;Rimklb;Rimklb;Rimklb,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,7,108653,ENSMUSG00000040649,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19547,cg04742492,0.00000792,0.00000162,4.898911902,0.00000156,gain,yes,0.00000219,0.00000275,0.796137495,0.426561358,pos,ns,0.002460531,0.000804688,3.057744105,0.002424432,pos,ns,2.615389953,-0.0000434,0.0000277,-1.567026198,0.118128737,neg,ns,0.054510956,Asic1,Asic1_Promoter,15,99664828,99664877,99664876,99664877,50,+,TAATCTCCCCTTCTGCCTGTGATATGGCGGGCTGCATTACAAGCTGGGCG,Promoter (5-6kb),15,99670368,99701128,30761,1,Asic1-201,-5491,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,6,11419,ENSMUSG00000023017,conserved gene and region,15,99664876,99665080,205,*,205,17,0.702439024,0.676961927,0.082926829,6.83E-12,CpGisland,TRUE,NA,NRS
14178,cg13637949,0.0000228,0.00000414,5.516202735,7.31E-08,gain,yes,-0.0000056,0.00000703,-0.796053593,0.426610048,neg,ns,0.004549105,0.002059252,2.209105169,0.027898349,pos,ns,1.554421497,-0.0000589,0.0000708,-0.832013381,0.406041846,neg,ns,0.059879179,Hoxd3,Hoxd3_fiveUTR,2,74732897,74732946,74732897,74732898,50,+,CGTCCCTTAAGAAACACGGAGTCGTCATTAATCTGCCACGCAAAGGGCTC,Promoter (<=1kb),2,74732913,74744214,11302,1,Hoxd3-205,0,Gm28230-201;Hoxd3-203;Hoxd3-205;Hoxd3-202;Hoxd4-203;Hoxd4-201;Hoxd4-202,Gm28230;Hoxd3;Hoxd3;Hoxd3;Hoxd4;Hoxd4;Hoxd4,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,8,24,15434,ENSMUSG00000079277,conserved gene but different region,2,74732626,74733055,430,*,430,35,0.590697674,0.938923202,0.081395349,1.14E-23,CpGisland,TRUE,U13,Hc-P
19024,cg14371358,-0.00000479,0.0000222,-0.216115933,0.829039517,loss,ns,0.00003,0.0000377,0.796038441,0.426618841,pos,ns,0.032851107,0.011035709,2.976800636,0.003142194,pos,ns,2.50276701,-0.000544276,0.000379517,-1.434127522,0.152543803,neg,ns,0.208295099,Prdm8,Prdm8_Intron,5,98180836,98180885,98180884,98180885,50,+,GTGCAGCAAACAAAAAGTGTGTGTCTGCGTGCCAGTCAGTCACTGCATCG,"Intron (Prdm8-202/Prdm8, intron 1 of 4)",5,98167198,98187454,20257,1,Prdm8-202,13638,Prdm8-202;Prdm8-201,Prdm8;Prdm8,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,10,77630,ENSMUSG00000035456,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
16868,cg15946322,-0.00000347,0.0000034,-1.022914157,0.307146007,loss,ns,0.00000459,0.00000577,0.795831114,0.426739172,pos,ns,0.003112808,0.001690555,1.841293556,0.066533871,pos,ns,1.176957205,-0.000150495,0.0000581,-2.588586734,0.010091215,neg,ns,0.919838864,Ythdc1,Ythdc1_threeUTR,5,86829400,86829449,86829448,86829449,50,-,AGTAGTTGGACTACTATATGAACTGTTACTATCATGTTTTATACCGGTCG,3' UTR,5,86804221,86836654,32434,1,Ythdc1-202,25179,Ythdc1-202;Ythdc1-203;Ythdc1-208;Ythdc1-201;Ythdc1-207;Ythdc1-206;Ythdc1-205;Ythdc1-204,Ythdc1;Ythdc1;Ythdc1;Ythdc1;Ythdc1;Ythdc1;Ythdc1;Ythdc1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,12,17,231386,ENSMUSG00000035851,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10308,cg06681652,0.0000469,0.00000868,5.40161071,0.000000132,gain,yes,-0.0000117,0.0000147,-0.795705505,0.426812084,neg,ns,0.007481196,0.004320572,1.731529138,0.084352285,pos,ns,1.073903146,-0.000432677,0.000148584,-2.912001283,0.003851795,neg,ns,0.213605885,AI593442,AI593442_Exon,9,52678004,52678053,52678004,52678005,50,-,CGCTTCTTCATCCTACGCTTGTGGATGTGGAAAGTGGAGAGGGACAGCAC,"Exon (AI593442-203/AI593442, exon 2 of 2)",9,52673042,52679780,6739,2,AI593442-203,1727,AI593442-203;AI593442-201;AI593442-202,AI593442;AI593442;AI593442,0;0;1384,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,330941,ENSMUSG00000078307,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
7245,cg21031345,0.000011,0.00000308,3.589975113,0.000384317,gain,ns,-0.00000416,0.00000523,-0.795687539,0.426822514,neg,ns,0.002008651,0.001531327,1.311706375,0.190589805,pos,ns,0.719900333,-0.0000248,0.0000527,-0.471448884,0.637651836,neg,ns,0.041912621,Gm8707,Gm8707_Intron,9,41736132,41736181,41736132,41736133,50,+,CGTCTAATCTCCAGTGTCAGCTCTCGTTAATGTGTGAGCGTGAAATCAGA,"Intron (Gm35835-202/Gm35835-202, intron 2 of 4)",9,41654303,41655282,980,1,Gm8707-201,81829,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,12,667566,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
22750,cg15070052,0.0000031,0.0000116,0.266615776,0.789942266,gain,ns,0.0000157,0.0000198,0.79566955,0.426832956,pos,ns,0.031071495,0.005790909,5.36556439,0.000000158,pos,ns,6.800657047,-0.000548897,0.000199149,-2.756215538,0.006193703,neg,ns,0.851448813,Sox6,Sox6_Intron,7,115906476,115906525,115906476,115906477,50,-,CGTGAAACTGAGCACTCCCTTGGGTGCAACAAACTTTAAATAATTTGTGA,"Intron (Sox6-210/Sox6, intron 2 of 15)",7,115470872,116031047,560176,2,Sox6-210,124522,Sox6-210;Sox6-201;Sox6-202;Sox6-204;Sox6-206;Sox6-209;Sox6-214;Sox6-208,Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,37,57,20679,ENSMUSG00000051910,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2931,cg18160843,-0.00000813,0.0000024,-3.386823626,0.000798225,loss,ns,-0.00000325,0.00000408,-0.795659364,0.42683887,neg,ns,-0.003559085,0.001194943,-2.978456245,0.003125744,neg,ns,2.505046551,0.000102627,0.0000411,2.497361026,0.013030475,pos,ns,0.952732424,Ehbp1,Ehbp1_Exon,11,22068415,22068464,22068463,22068464,50,-,GGAAGTTCTGACATCTTCACTCCAGATCGAGCTTCTGCTATTAGCTGACG,"Exon (Ehbp1-201/Ehbp1, exon 15 of 24)",11,22005828,22285838,280011,2,Ehbp1-201,217374,Ehbp1-201;Ehbp1-202;Ehbp1-207,Ehbp1;Ehbp1;Ehbp1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,11,45,216565,ENSMUSG00000042302,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20203,cg09773031,0.0000314,0.00000301,10.40586509,6.01E-22,gain,yes,-0.00000407,0.00000512,-0.795584629,0.426882256,neg,ns,0.004132645,0.001500169,2.754785705,0.006220172,pos,ns,2.20619761,-0.0000739,0.0000516,-1.432939141,0.152882914,neg,ns,0.069391416,Unc79,Unc79_fiveUTR,12,102949303,102949352,102949351,102949352,50,+,ACAGGAAGCCTTTGGCCGCCTATTAAATCCCACCCATTTCTCCGGGGGCG,Promoter (<=1kb),12,102948859,103184001,235143,1,Unc79-202,444,Unc79-202;Unc79-208,Unc79;Unc79,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,12,24,217843,ENSMUSG00000021198,conserved gene and region,12,102948810,102949512,703,*,703,59,0.644381223,0.809149434,0.083926031,2.91E-40,CpGisland,TRUE,NA,NRS
24414,cg06487255,0.0000028,0.0000156,0.179802961,0.857424731,gain,ns,0.000021,0.0000264,0.795535202,0.426910951,pos,ns,0.008955805,0.007748595,1.15579719,0.248654128,pos,ns,0.604404326,0.0000382,0.000266474,0.143485224,0.886000204,pos,ns,0.476469173,Grik3,Grik3_Intron,4,125535294,125535343,125535294,125535295,50,+,CGCGGGTGTTTCATTCAGCTTAACTGAAAAGGCCTTTAAATCACCGCAGC,"Intron (Grik3-201/Grik3, intron 1 of 15)",4,125490700,125714173,223474,1,Grik3-201,44594,Grik3-201,Grik3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,14,18,14807,ENSMUSG00000001985,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24811,cg21403740,-0.0000224,0.00000512,-4.367420318,0.0000172,loss,ns,0.00000692,0.0000087,0.795514552,0.42692294,pos,ns,-0.001649843,0.002547678,-0.647586871,0.517731478,neg,ns,0.285895429,-0.0000231,0.0000876,-0.263389423,0.792425425,neg,ns,0.936256823,Ikzf4,Ikzf4_threeUTR,10,128634253,128634302,128634253,128634254,50,-,CGAAGCACTTCCTTGGAGGGGCCTGGGGTGCCCCGCAATAACCCCTCCTG,3' UTR,10,128630843,128645991,15149,2,Ikzf4-201,11689,Ikzf4-201;Ikzf4-209;Ikzf4-210;Ikzf4-203;Ikzf4-208;Ikzf4-204,Ikzf4;Ikzf4;Ikzf4;Ikzf4;Ikzf4;Ikzf4,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,6,22781,ENSMUSG00000002578,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2244,cg08167912,0.0000563,0.0000102,5.495806914,8.13E-08,gain,yes,0.0000138,0.0000174,0.795428917,0.426972661,pos,ns,0.00633328,0.005094283,1.243213206,0.214728691,pos,ns,0.668109924,0.0000297,0.000175192,0.16944758,0.865555119,pos,ns,0.519684982,Gm12024,Gm12024_Intergenic_upstream,11,18751553,18751602,18751553,18751554,50,-,CGGATTGTAATCAAGAAGATGCTTAGCTGTGCAACACTGCATCTCGAGCA,Distal Intergenic,11,18577227,18578479,1253,2,Gm12024-201,-173123,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,12,100417654,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14139,cg26955784,0.0000137,0.00000287,4.761863746,0.00000295,gain,ns,-0.00000388,0.00000488,-0.795296049,0.427049811,neg,ns,0.000722264,0.001430889,0.504766379,0.614081552,pos,ns,0.211773949,-0.000013,0.0000492,-0.263973791,0.79197551,neg,ns,0.059720077,Hoxd10,Hoxd10_Exon,2,74694273,74694322,74694321,74694322,50,+,GTCAAGATTTGGTTTCAAAACCGCCGAATGAAACTCAAGAAGATGAGCCG,"Exon (Hoxd10-201/Hoxd10, exon 2 of 2)",2,74691924,74695105,3182,1,Hoxd10-201,2349,Hoxd10-201;Hoxd9-201,Hoxd10;Hoxd9,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,21,24,15430,ENSMUSG00000050368,conserved gene and region,2,74694222,74694348,127,*,127,12,0.519685039,1.400735294,0.094488189,3.59E-09,CpGisland,TRUE,U13,Hc-P
10701,cg00865002,-0.00000113,0.00000266,-0.424056744,0.67181854,loss,ns,0.0000036,0.00000453,0.795273355,0.42706299,pos,ns,0.000709615,0.001326148,0.53509461,0.592968056,pos,ns,0.226968702,-0.000000279,0.0000456,-0.006121016,0.995120103,neg,ns,0.043037684,Zfp608,Zfp608_Intron,18,54991064,54991113,54991064,54991065,50,+,CGTTTGGAAGCTAAAAGCAGTAATGAATTGTTGATGGATTGGAAGTGGAG,"Intron (Gm4221-203/Gm4221-203, intron 1 of 1)",18,54888723,54992555,103833,2,Zfp608-203,1442,Zfp608-201;Zfp608-203,Zfp608;Zfp608,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,32,269023,ENSMUSG00000052713,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
7427,cg19442846,0.0000719,0.00000568,12.66984394,6.27E-30,gain,yes,-0.00000767,0.00000964,-0.795163189,0.427126966,neg,ns,0.007360894,0.002824527,2.606062298,0.009601219,pos,ns,2.017673646,0.0000628,0.0000971,0.646938583,0.518150418,pos,ns,0.199875236,Ostm1,Ostm1_Intron,10,42613814,42613863,42613862,42613863,50,+,CACAATGGGCCTCTTCACTTTTCAGGTTTGGGAGACCTGGGTGACCTACG,"Intron (Ostm1-202/Ostm1, intron 2 of 5)",10,42583835,42698323,114489,1,Ostm1-202,29979,Ostm1-202;Ostm1-203,Ostm1;Ostm1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,21,22,14628,ENSMUSG00000038280,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
19171,cg19258589,0.000000743,0.00000113,0.655699716,0.512503677,gain,ns,-0.00000153,0.00000192,-0.795065085,0.427183941,neg,ns,-0.001054813,0.000563836,-1.87077824,0.062317814,neg,ns,1.205387792,0.0000206,0.0000194,1.061355045,0.28935474,pos,ns,0.970534904,Thra,Thra_Exon,11,98760915,98760964,98760963,98760964,50,-,ACCTATTCCTGCAAATATGACAGCTGCTGTGTCATTGACAAGATCACCCG,"Exon (Thra-201/Thra, exon 5 of 10)",11,98741811,98769006,27196,1,Thra-201,19104,Thra-207;Thra-201;Thra-202;Thra-208;Thra-203,Thra;Thra;Thra;Thra;Thra,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,13,18,21833,ENSMUSG00000058756,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7416,cg13720362,0.0000117,0.00000255,4.594949694,0.00000631,gain,ns,-0.00000344,0.00000432,-0.795015565,0.427212703,neg,ns,0.000868815,0.001266697,0.685890118,0.493295032,pos,ns,0.306893259,0.0000073,0.0000436,0.167543664,0.867051538,pos,ns,0.059894647,Nr2e1,Nr2e1_Intron,10,42578704,42578753,42578704,42578705,50,-,CGCGCGAGGAGACAAACTTGAAATGTAAAAGGGAAAAGAAGAAAAACAAA,"Intron (Nr2e1-201/Nr2e1, intron 1 of 8)",10,42561963,42583632,21670,2,Nr2e1-201,4879,Nr2e1-201;Nr2e1-203;Nr2e1-204,Nr2e1;Nr2e1;Nr2e1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,11,21907,ENSMUSG00000019803,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
21484,cg24822649,0.0000213,0.00000946,2.249605681,0.025175368,gain,ns,-0.0000128,0.0000161,-0.794973239,0.427237288,neg,ns,-0.001673306,0.004707304,-0.355470207,0.72247911,neg,ns,0.141174706,0.0000209,0.000161884,0.129246477,0.897246437,pos,ns,0.745095397,Camkv,Camkv_Exon,9,107945334,107945383,107945382,107945383,50,-,AGCCATCGGAGGTGACTGACAGATATGATTTGGGACAGGTCATCAAGACG,"Exon (Camkv-201/Camkv, exon 2 of 11)",9,107935674,107949691,14018,1,Camkv-201,9660,Camkv-201;Camkv-202;Camkv-203;Camkv-205;Camkv-204;Traip-206,Camkv;Camkv;Camkv;Camkv;Camkv;Traip,0;0;0;0;0;-4753,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,3,235604,ENSMUSG00000032936,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20292,cg05784086,0.0000373,0.00000393,9.507491475,5.63E-19,gain,yes,-0.0000053,0.00000667,-0.79483845,0.427315582,neg,ns,0.004804306,0.001954446,2.458141528,0.014512583,pos,ns,1.838255274,-0.000121311,0.0000672,-1.80486574,0.072065961,neg,ns,0.048594828,Hoxc5,Hoxc5_Exon,15,102991031,102991080,102991031,102991032,50,-,CGCCTCCAAATTCTATGGCTACGAGGCGCTCCCCAGACAGTCCCTTTATG,"Exon (Hoxc8-201/Hoxc8, exon 1 of 2)",15,102967443,103015676,48234,1,Hoxc5-202,23588,Hoxc5-202;Hoxc8-201;Hoxc8-202,Hoxc5;Hoxc8;Hoxc8,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,72,134,15424,ENSMUSG00000022485,conserved gene and region,15,102990435,102991303,869,*,869,73,0.63406214,0.844205792,0.084004603,1.12E-49,CpGisland,TRUE,U13,Hc-P
3665,cg00116653,0.0000124,0.0000119,1.047318996,0.295768357,gain,ns,0.000016,0.0000202,0.7948215,0.427325428,pos,ns,0.005380224,0.00590905,0.910505714,0.363263282,pos,ns,0.439778498,0.000161462,0.000203212,0.794552385,0.427481776,pos,ns,0.662121011,Erfl,Erfl_Promoter,7,24952542,24952591,24952542,24952543,50,+,CGATTTAGGTTTTAATTCCGGGGCTTTTGGAGCCTGTCAGCCCTGATGTA,Promoter (8-9kb),7,24927445,24944494,17050,2,Erfl-201,-8048,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,29,36,,NA,mapped to different genes,7,24952497,24952630,134,*,134,13,0.649253731,0.921693122,0.097014925,4.65E-10,CpGisland,TRUE,U13,Hc-P
17755,cg00466950,0.00000383,0.00000125,3.054901512,0.002446841,gain,ns,0.00000169,0.00000213,0.794791878,0.427342636,pos,ns,0.0000227,0.000623884,0.036408981,0.970979687,pos,ns,0.012789856,0.0000184,0.0000215,0.859651965,0.390645208,pos,ns,0.965595421,Fto,Fto_Intron,8,91630491,91630540,91630491,91630492,50,+,CGCATCAGCCACCAGCTGTCTGACAGTGTGTTGCTATTGCAGTGAGTGTT,"Intron (Fto-201/Fto, intron 8 of 8)",8,91313525,91668439,354915,1,Fto-201,316966,Fto-201;Fto-205,Fto;Fto,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,26,26383,ENSMUSG00000055932,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17875,cg18344148,-0.0000104,0.00000403,-2.571479266,0.010592443,loss,ns,0.00000544,0.00000685,0.794626136,0.427438925,pos,ns,0.003230271,0.0020061,1.610224326,0.108366641,pos,ns,0.965104388,-0.000207003,0.000069,-3.000493177,0.002914178,neg,ns,0.939374471,Dlg2,Dlg2_Exon,7,92286495,92286544,92286495,92286496,50,+,CGCTCGATTTGAGGCCAAAATCCATGACCTACGAGAGCAGATGATGAACC,"Exon (Dlg2-217/Dlg2, exon 19 of 28)",7,90477231,92449247,1972017,1,Dlg2-217,1809264,Dlg2-217;Dlg2-204;Dlg2-209;Dlg2-201;Dlg2-220;Dlg2-218;Dlg2-219;Dlg2-203;Dlg2-202;Dlg2-206;Dlg2-212;Dlg2-208;Dlg2-207;Dlg2-214,Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,21,23859,ENSMUSG00000052572,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15544,cg10505126,-0.0000324,0.00000768,-4.216776534,0.0000326,loss,ns,0.0000104,0.0000131,0.794556178,0.427479572,pos,ns,-0.002956524,0.003824615,-0.773025313,0.440096412,neg,ns,0.356452172,-0.000114762,0.000131528,-0.872530732,0.383594218,neg,ns,0.850943125,Gm19311,Gm19311_Exon,14,81685829,81685878,81685829,81685830,50,-,CGTAATAGATGTAATACATCAATACATTTGAGCTGAACAGCTTTAATTAG,"Exon (Gm41219-201/Gm41219-201, exon 1 of 2)",14,81703206,81703671,466,2,Gm19311-201,17842,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,100502666,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6695,cg05143854,0.0000134,0.00000495,2.707276369,0.007159977,gain,ns,0.00000668,0.00000842,0.794381874,0.427580855,pos,ns,0.000840684,0.002465367,0.340997594,0.733336387,pos,ns,0.134696766,-0.000028,0.0000848,-0.330281947,0.741410028,neg,ns,0.667204095,Arap3,Arap3_Intergenic_upstream,18,38085213,38085262,38085213,38085214,50,+,CGGCCGTGCCTGGATGTCAAACTCAAGCGTGATTGCTGTTAATCACCTCC,Distal Intergenic,18,37996312,37998969,2658,2,Arap3-203,-86244,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,10,106952,ENSMUSG00000024451,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22894,cg24509799,-0.000022,0.0000114,-1.930463921,0.054461266,loss,ns,0.0000154,0.0000194,0.793990536,0.4278083,pos,ns,0.020644375,0.005677606,3.636105309,0.000323998,pos,ns,3.489458013,-0.000491152,0.000195252,-2.515471114,0.012392686,neg,ns,0.698601754,Meis2,Meis2_Promoter,2,116069807,116069856,116069807,116069808,50,+,CGAGAGGAGCTGTCCAGCTGCGTGGGGACTCATTAACTGCAAAAGATCTG,Promoter (3-4kb),2,115863064,116065839,202776,2,Meis2-206,-3968,Meis2-201;Meis2-203;Meis2-205;Meis2-206,Meis2;Meis2;Meis2;Meis2,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,6,97,17536,ENSMUSG00000027210,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
48,cg12844569,-0.0000208,0.0000204,-1.019115052,0.308943024,loss,ns,0.0000275,0.0000346,0.793784804,0.4279279,pos,ns,0.006186269,0.010142521,0.609934065,0.54235231,pos,ns,0.265718506,-0.000149266,0.0003488,-0.427939868,0.668992041,neg,ns,0.665106547,Morc2a,Morc2a_Exon,11,3650399,3650448,3650447,3650448,50,-,GCAGTCTGAATCGAGCTCAGCTAACCTTTGAATATCTGCACACAAATTCG,"Exon (Morc2a-202/Morc2a, exon 1 of 26)",11,3649191,3690477,41287,1,Morc2a-202,1208,Morc2a-202;Morc2a-201;Morc2a-206;Tug1-201;Tug1-203;Tug1-202;Tug1-207;Tug1-206;Tug1-208;Tug1-204;Tug1-205,Morc2a;Morc2a;Morc2a;Tug1;Tug1;Tug1;Tug1;Tug1;Tug1;Tug1;Tug1,0;0;0;-2863;-2869;-1587;-2493;-3117;-3267;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,74522,ENSMUSG00000034543,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
715,cg09537600,-0.0000702,0.0000222,-3.16090601,0.001728227,loss,ns,0.0000299,0.0000377,0.793714904,0.42796854,pos,ns,0.00800018,0.011046516,0.724226542,0.469472869,pos,ns,0.328389501,-0.001430675,0.000379889,-3.766035889,0.000198431,neg,ns,0.737141135,Nipbl,Nipbl_Exon,15,8291379,8291428,8291379,8291380,50,-,CGGCGCTTAGCCTCAGTCCAGGAGCCACTGTAGGAGCCTGCCATCCACTG,"Exon (Nipbl-201/Nipbl, exon 47 of 47)",15,8290617,8444463,153847,2,Nipbl-201,153035,Nipbl-201,Nipbl,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,19,36,71175,ENSMUSG00000022141,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14670,cg21155140,-0.000114577,0.0000116,-9.888456737,3.21E-20,loss,yes,0.0000156,0.0000197,0.793595563,0.428037931,pos,ns,-0.010664258,0.005766921,-1.849211645,0.065379103,neg,ns,1.18456104,-0.00000221,0.000198324,-0.011150748,0.991110347,neg,ns,0.776030624,Usp25,Usp25_Exon,16,77237210,77237259,77237210,77237211,50,+,CGAAGCCAGCTCTGCAGCTCAGCCAATCAGTGACATCATTGGTGAGAAAC,"Exon (Mir99ahg-214/Mir99ahg-214, exon 2 of 4)",16,77083900,77108205,24306,1,Usp25-203,153310,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,5,30940,ENSMUSG00000022867,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2435,cg00824176,-0.0000039,0.0000111,-0.351407131,0.725521653,loss,ns,-0.000015,0.0000189,-0.793568359,0.428053749,neg,ns,-0.006852904,0.005524754,-1.240399801,0.21576554,neg,ns,0.666017915,0.000118182,0.000189996,0.622025834,0.53438209,pos,ns,0.120377222,Ptf1a,Ptf1a_Intergenic_downstream,2,19450994,19451043,19450994,19450995,50,+,CGAAATGATATCTTTATTGCTAGGTTCATGTCCTGGGCTATAACATATCA,Distal Intergenic,2,19445663,19447501,1839,1,Ptf1a-201,5331,Ptf1a-201,Ptf1a,5331,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,14,21,19213,ENSMUSG00000026735,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
21259,cg20215345,0.000121342,0.000016,7.572334711,4.24E-13,gain,yes,-0.0000216,0.0000272,-0.793534328,0.428073538,neg,ns,0.050755856,0.007975496,6.363974837,7.06E-10,pos,ns,9.151162492,-0.001476364,0.000274277,-5.382756301,0.000000145,neg,yes,0.562028163,Ssbp3,Ssbp3_Intron,4,107016177,107016226,107016177,107016178,50,+,CGCCGTAACTCTCACTGATGAAATGGAAAGTTGAACATAAATCAATGTCT,"Intron (Ssbp3-216/Ssbp3, intron 5 of 8)",4,106910701,107031069,120369,1,Ssbp3-216,105476,Ssbp3-216;Ssbp3-201;Ssbp3-215;Ssbp3-202;Ssbp3-203;Ssbp3-213;Ssbp3-214;Ssbp3-211;Ssbp3-212;Ssbp3-204;Ssbp3-206,Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,18,72475,ENSMUSG00000061887,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2573,cg21424058,0.0000061,0.00000337,1.811473181,0.071035322,gain,ns,-0.00000454,0.00000572,-0.7934749,0.428108097,neg,ns,-0.002392693,0.001676608,-1.42710375,0.154556443,neg,ns,0.810912887,0.0000587,0.0000577,1.017791678,0.309570631,pos,ns,0.916354366,Rbm10,Rbm10_Exon,X,20637608,20637657,20637656,20637657,50,+,TAACATCGTCATGCTGAGGATGCTGCCACAGGCAGCCACTGAGGATGACG,"Exon (Rbm10-205/Rbm10, exon 4 of 24)",20,20617503,20650888,33386,1,Rbm10-205,20105,Rbm10-205;Rbm10-204;Rbm10-203;Rbm10-206;Rbm10-201;Rbm10-202;Rbm10-207,Rbm10;Rbm10;Rbm10;Rbm10;Rbm10;Rbm10;Rbm10,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,14,236732,ENSMUSG00000031060,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2036,cg08247363,-0.0000262,0.00000589,-4.444636318,0.0000123,loss,ns,-0.00000794,0.00001,-0.793349267,0.428181159,neg,ns,0.003309676,0.002932418,1.128650778,0.259917858,pos,ns,0.585163881,-0.00023682,0.000100846,-2.348344391,0.019485094,neg,ns,0.139375147,Gm38154,Gm38154_Intergenic_upstream,3,17616933,17616982,17616981,17616982,50,+,GGCATTTGCCAATCTAAGCAGCACTGGTAGGCAAACAAGCATGGCACACG,Distal Intergenic,3,17670688,17671027,340,1,Gm38154-201,-53706,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,15,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2107,cg21550097,0.0000419,0.0000272,1.54373378,0.12367302,gain,ns,-0.0000366,0.0000461,-0.793329908,0.428192418,neg,ns,0.012985006,0.013513072,0.960921888,0.33734034,pos,ns,0.471931722,0.0000303,0.000464713,0.065260633,0.94800855,pos,ns,0.699416711,Skida1,Skida1_fiveUTR,2,18048969,18049018,18049017,18049018,50,+,CCCAAAGTAAATAATACAGTCGGTATATAAATCTTTCCATTAAACTATCG,Promoter (<=1kb),2,18044083,18049051,4969,2,Skida1-202,33,Skida1-205;Skida1-202;Skida1-201;Skida1-203;Skida1-204,Skida1;Skida1;Skida1;Skida1;Skida1,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,8,31,72668,ENSMUSG00000054074,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
14078,cg25726820,0.0000644,0.00000821,7.846506243,6.99E-14,gain,yes,0.0000111,0.000014,0.793298085,0.428210927,pos,ns,0.001444546,0.004087006,0.353448492,0.723992478,pos,ns,0.140265946,0.000399324,0.000140552,2.841118499,0.004793251,pos,ns,0.274945829,Evx2,Evx2_Intergenic_downstream,2,74651362,74651411,74651362,74651363,50,+,CGTGACATGCGTTGATCAGATAATCAATGTCAAAGATGCGATGAATGTCA,Downstream (1-2kb),2,74655616,74659419,3804,2,Evx2-202,8008,Evx2-201;Evx2-202,Evx2;Evx2,0;8008,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,17,35,14029,ENSMUSG00000001815,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
18985,cg20317006,0.000000122,0.00000345,0.035371713,0.971806105,gain,ns,-0.00000464,0.00000585,-0.793247474,0.428240363,neg,ns,-0.000279216,0.001715167,-0.162792389,0.870787967,neg,ns,0.060087581,-0.0000502,0.000059,-0.851471694,0.395164638,neg,ns,0.945363416,Nfia,Nfia_threeUTR,4,98113270,98113319,98113270,98113271,50,+,CGAAAACAAAAATTCCATATCAATGTGCCTTGCCCTGGATAGCGATTATT,3' UTR,4,97777608,98118871,341264,1,Nfia-202,335662,Nfia-202;Nfia-203;Nfia-205;Nfia-201;Nfia-204,Nfia;Nfia;Nfia;Nfia;Nfia,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,8,44,18027,ENSMUSG00000028565,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19332,cg01586860,-0.00000334,0.00000127,-2.633957527,0.008863126,loss,ns,0.00000171,0.00000216,0.79320818,0.428263218,pos,ns,0.000486497,0.000631921,0.769870427,0.441963005,pos,ns,0.354614083,-0.0000186,0.0000217,-0.856975081,0.392120646,neg,ns,0.96029279,Atp2b1,Atp2b1_Exon,10,99019284,99019333,99019332,99019333,50,+,GTAGTGAATGCTTTCCAGAGTGGAAGTTCCATTCAGGGGGCTCTAAGGCG,"Exon (Atp2b1-210/Atp2b1, exon 5 of 6)",10,98915152,99026143,110992,1,Atp2b1-201,104132,Atp2b1-201;Atp2b1-202;Atp2b1-210;Atp2b1-205;Atp2b1-209;Atp2b1-203,Atp2b1;Atp2b1;Atp2b1;Atp2b1;Atp2b1;Atp2b1,0;4391;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,7,67972,ENSMUSG00000019943,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15485,cg26881076,-0.00000128,0.00000185,-0.694506433,0.487884831,loss,ns,0.00000249,0.00000314,0.79318099,0.428279034,pos,ns,0.000931063,0.00091923,1.012871984,0.311911201,pos,ns,0.505969029,-0.0000192,0.0000316,-0.608158309,0.543527786,neg,ns,0.963098508,Gm7503,Gm7503_Intergenic_upstream,18,81132088,81132137,81132088,81132089,50,+,CGTTAATTAGGCACAATCTACAGGAACAAATGAGGCACGACCCTTGGTGA,Distal Intergenic,18,80997003,80997383,381,2,Gm7503-201,-134705,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,17,21,665124,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7802,cg19791395,-0.000019,0.00000909,-2.093304117,0.037134405,loss,ns,0.0000122,0.0000154,0.793162871,0.428289573,pos,ns,0.00133357,0.004522577,0.294869495,0.76829095,pos,ns,0.114474283,-0.000235239,0.000155531,-1.512487759,0.131428583,neg,ns,0.131140105,1700008O03Rik,1700008O03Rik_threeUTR,7,44360049,44360098,44360097,44360098,50,+,ACCAGGTCATTCTTTATAATTAAACTCACAGTATCCACCCCCTCGAGCCG,3' UTR,7,44360043,44375030,14988,2,1700008O03Rik-201,14932,1700008O03Rik-201;1700008O03Rik-203;1700008O03Rik-205;1700008O03Rik-204;Shank1-203;Shank1-202;Shank1-201,1700008O03Rik;1700008O03Rik;1700008O03Rik;1700008O03Rik;Shank1;Shank1;Shank1,0;14416;13502;25586;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,69349,ENSMUSG00000008028,conserved gene and region,7,44360092,44360530,439,*,439,44,0.671981777,0.887928657,0.10022779,9.65E-34,CpGisland,TRUE,NA,NRS
10137,cg25520529,0.000112892,0.0000114,9.91941863,2.54E-20,gain,yes,-0.0000153,0.0000193,-0.793107543,0.428321756,neg,ns,0.018001144,0.005664413,3.177936568,0.001632894,pos,ns,2.787041925,-0.000319112,0.000194799,-1.638160554,0.102402752,neg,ns,0.531749615,Gm28308,Gm28308_threeUTR,6,52201960,52202009,52202008,52202009,50,+,CTTCCAGAGTTCGTGCAAAGGGTCCTATAAAGGCACGCAGGGACACACCG,3' UTR,6,52163359,52213339,49981,2,Gm28308-201,11330,Gm28308-201;Hoxa3-201;Hoxa3-203;Hoxa5-201;Hoxa6-201,Gm28308;Hoxa3;Hoxa3;Hoxa5;Hoxa6,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,103,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
6384,cg02162827,-0.0000237,0.000022,-1.074565887,0.283404798,loss,ns,0.0000297,0.0000374,0.793041568,0.428360135,pos,ns,-0.012402375,0.010967782,-1.130800653,0.259013086,neg,ns,0.586678293,0.000613325,0.000377181,1.626076511,0.104949468,pos,ns,0.713502118,Pknox2,Pknox2_Intron,9,37076652,37076701,37076652,37076653,50,+,CGTTAGGCAAACGAAATTATCCGTAAGACAATACTCTTCTGGACAGGGGG,"Intron (Pknox2-207/Pknox2, intron 1 of 10)",9,36890982,37083309,192328,2,Pknox2-207,6608,Pknox2-207;Pknox2-201;Pknox2-202;Pknox2-206;Pknox2-204;Pknox2-205;Pknox2-208;Pknox2-210;Pknox2-209;Pknox2-212;Pknox2-211,Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,47,208076,ENSMUSG00000035934,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11160,cg17988745,0.00000598,0.00000198,3.019532115,0.002742056,gain,ns,0.00000267,0.00000336,0.792973912,0.428399493,pos,ns,0.002597274,0.000984955,2.636945628,0.008787163,pos,ns,2.05615132,-0.0000379,0.0000339,-1.119895854,0.263625049,neg,ns,0.950312045,Satb2,Satb2_threeUTR,1,56794195,56794244,56794195,56794196,50,-,CGGGAAATTGTGCTTTGTCAAGAGGCACTACAAGAGAAAGTTTCTTCTTC,3' UTR,1,56793981,56972502,178522,2,Satb2-201,178258,Satb2-201;Satb2-202;Satb2-205,Satb2;Satb2;Satb2,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,33,212712,ENSMUSG00000038331,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2044,cg05418097,-0.00000328,0.000000913,-3.599611935,0.000370905,loss,ns,-0.00000123,0.00000155,-0.792972223,0.428400476,neg,ns,-0.001233715,0.000454193,-2.716280662,0.006972582,neg,ns,2.156606399,0.0000101,0.0000156,0.645717233,0.518940165,pos,ns,0.02870701,Cited2,Cited2_Promoter,10,17722169,17722218,17722169,17722170,50,-,CGTTTGCTTCTAAATCAACCCCAAACCGTCAGGCAGAGCCCGGAGGGAGG,Promoter (1-2kb),10,17723218,17725674,2457,1,Cited2-201,-1049,Cited2-201;Cited2-203;Cited2-202,Cited2;Cited2;Cited2,0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,4,11,17684,ENSMUSG00000039910,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
8094,cg19959922,0.0000964,0.0000135,7.154252105,6.10E-12,gain,yes,-0.0000182,0.0000229,-0.792741601,0.428534655,neg,ns,0.028068989,0.006708097,4.184344212,0.0000373,pos,ns,4.428467849,-0.000776489,0.000230691,-3.365926559,0.000858883,neg,ns,0.422091322,Ebf1,Ebf1_Intron,11,44741134,44741183,44741182,44741183,50,+,GGCCCCTGACTGACAGGGCCTATTGATTTTTTAGGTTTCTGCCGTCATCG,"Intron (Ebf1-203/Ebf1, intron 6 of 15)",11,44617317,45004995,387679,1,Ebf1-203,123817,Ebf1-203;Ebf1-202;Ebf1-201,Ebf1;Ebf1;Ebf1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,80,13591,ENSMUSG00000057098,conserved gene and region,11,44741176,44741251,76,*,76,9,0.723684211,0.904761905,0.118421053,8.12E-08,CpGisland,TRUE,NA,NRS
7449,cg09350192,-0.00000416,0.0000028,-1.485706183,0.13837308,loss,ns,0.00000377,0.00000476,0.792712316,0.428551695,pos,ns,0.000191462,0.001393276,0.137418374,0.890789318,pos,ns,0.050225,-0.000000572,0.0000479,-0.011940423,0.990480828,neg,ns,0.92778468,Grik4,Grik4_Exon,9,42687948,42687997,42687948,42687949,50,+,CGTACTCGCTGTCTCTGAGAAGCTCAAAGATGTCCACTTCGACCTTGGCC,"Exon (Grik4-202/Grik4, exon 4 of 21)",9,42518135,42944493,426359,2,Grik4-202,256496,Grik4-202;Grik4-201,Grik4;Grik4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,8,110637,ENSMUSG00000032017,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
402,cg06222547,-0.00000665,0.00000452,-1.470065825,0.142558111,loss,ns,0.00000609,0.00000769,0.792337594,0.428769772,pos,ns,0.00354906,0.002251734,1.576145048,0.116012295,pos,ns,0.93549598,-0.000159769,0.0000774,-2.063211411,0.039924898,neg,ns,0.915612802,Zfhx4,Zfhx4_threeUTR,3,5415235,5415284,5415283,5415284,50,-,TCCTGGCAGTTAACACGATGTGCAACAGTGTGTTAGCATGGAACAGAACG,3' UTR,3,5218554,5415855,197302,1,Zfhx4-201,196681,Zfhx4-203;Zfhx4-201;Zfhx4-205,Zfhx4;Zfhx4;Zfhx4,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,77,80892,ENSMUSG00000025255,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14874,cg24359120,-0.0000113,0.00000528,-2.136235496,0.033443188,loss,ns,-0.0000071,0.00000896,-0.792312848,0.428784175,neg,ns,0.004102768,0.00262635,1.562155998,0.11927149,pos,ns,0.923463355,-0.000302452,0.0000903,-3.348671531,0.000912177,neg,ns,0.911843568,Phf12,Phf12_threeUTR,11,78029812,78029861,78029860,78029861,50,+,CTAGGGGGCATTTGCACATATATTTGTACTCAACATTTCATGGGAAAGCG,3' UTR,11,77982802,78030539,47738,1,Phf12-201,47010,Dhrs13-201;Dhrs13-204;Dhrs13-203;Dhrs13-202;Phf12-202;Phf12-201;Phf12-207;Phf12-206;Phf12-208;Phf12-205;Phf12-203;Phf12-204,Dhrs13;Dhrs13;Dhrs13;Dhrs13;Phf12;Phf12;Phf12;Phf12;Phf12;Phf12;Phf12;Phf12,-2419;-2488;-2491;-2498;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,11,27,268448,ENSMUSG00000037791,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21691,cg17443147,-0.000000342,0.00000488,-0.070110758,0.94415071,loss,ns,-0.00000656,0.00000829,-0.792303952,0.428789353,neg,ns,0.000113734,0.002427445,0.046853259,0.96266035,pos,ns,0.016526916,-0.0001387,0.0000835,-1.661487488,0.097626486,neg,ns,0.576932275,Zfhx3,Zfhx3_Intron,8,108846755,108846804,108846803,108846804,50,+,AGTTAAAGTGCCACAGAGTTTGCTGGCTGCGCTTGCTGGTTGATTTAACG,"Intron (Zfhx3-204/Zfhx3, intron 9 of 15)",8,107942644,108961630,1018987,1,Zfhx3-204,904111,Zfhx3-204;Zfhx3-201,Zfhx3;Zfhx3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,114,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10506,cg00529649,0.0000197,0.00000446,4.427431193,0.0000132,gain,ns,-0.000006,0.00000757,-0.7921752,0.4288643,neg,ns,-0.001372879,0.002218587,-0.618807531,0.536497601,neg,ns,0.270432216,0.000105431,0.0000763,1.381842905,0.168014908,pos,ns,0.81131832,Npas3,Npas3_Intron,12,53916992,53917041,53916992,53916993,50,+,CGGATGTGTCAAAAAGCATCTTTGTTCTGTGGGTTAAGCAGTAAGCTCTC,"Intron (Npas3-204/Npas3, intron 4 of 10)",12,53248157,54069532,821376,1,Npas3-204,668835,Npas3-204;Npas3-201;Npas3-203,Npas3;Npas3;Npas3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,83,103,27386,ENSMUSG00000021010,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17057,cg12445709,-0.00003,0.00000553,-5.415945142,0.000000123,loss,yes,0.00000744,0.0000094,0.792107617,0.428903643,pos,ns,-0.00376607,0.002752974,-1.368000384,0.172302735,neg,ns,0.763707828,0.000156141,0.0000947,1.649241714,0.100111051,pos,ns,0.847589841,Rpn1,Rpn1_Intergenic_downstream,6,88117171,88117220,88117219,88117220,50,-,GTCAACCGCAAGCTCAGGGTATTTCACAAACTATCTATCACTGCTGTGCG,Distal Intergenic,6,88101571,88103387,1817,1,Rpn1-204,15649,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,103963,ENSMUSG00000030062,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U5,En-Sd
11638,cg18394148,0.0000236,0.00000141,16.75051713,2.69E-45,gain,yes,-0.00000189,0.00000239,-0.792062622,0.428929838,neg,ns,0.002421905,0.00070063,3.456750389,0.000623074,pos,ns,3.205460522,0.00000084,0.0000241,0.034856884,0.972216295,pos,ns,0.017615638,Celf6,Celf6_Exon,9,59578588,59578637,59578588,59578589,50,-,CGCATCTACGAGCTGACGGTGCTGAAGGACCGGCTCACCGGCCTCCACAA,Promoter (<=1kb),9,59577917,59607292,29376,1,Celf6-207,671,Celf6-207;Celf6-203;Celf6-205;Celf6-201,Celf6;Celf6;Celf6;Celf6,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,8,76183,ENSMUSG00000032297,conserved gene but different region,9,59577836,59578646,811,*,811,79,0.700369914,0.79687811,0.097410604,4.77E-59,CpGisland,TRUE,U3,Pr-B
23654,cg23375026,-0.0000099,0.0000045,-2.201233659,0.028456216,loss,ns,-0.00000605,0.00000764,-0.792015375,0.428957345,neg,ns,-0.000368562,0.002239434,-0.16457826,0.869383204,neg,ns,0.060788754,-0.0000978,0.000077,-1.270165935,0.204978041,neg,ns,0.93981294,Scn5a,Scn5a_Exon,9,119521318,119521367,119521366,119521367,50,+,TTGATGAGTGTGTTCAGGGTGGGCCATGATTTGGCCAGCTTGAAGACCCG,"Exon (Scn5a-201/Scn5a, exon 15 of 27)",9,119483408,119562678,79271,2,Scn5a-201,41311,Scn5a-201;Scn5a-202;Scn5a-203,Scn5a;Scn5a;Scn5a,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,6,20271,ENSMUSG00000032511,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13820,cg15463975,0.0000286,0.00000283,10.10323186,6.23E-21,gain,yes,-0.00000381,0.00000481,-0.791997021,0.42896803,neg,ns,0.002267217,0.001409,1.609096563,0.108613079,pos,ns,0.964117873,0.0000105,0.0000485,0.217021172,0.828334603,pos,ns,0.087541269,Six1,Six1_Intron,12,73041351,73041400,73041351,73041352,50,+,CGCAGCGTCCTTTGAAGCCTGTCAGGGTCATTGAAAGCTATCTTTGTGCA,"Intron (Six1-204/Six1, intron 1 of 1)",12,73040015,73042815,2801,2,Six1-204,1415,Six1-204;Six1-201;Six1-203;Six1-202,Six1;Six1;Six1;Six1,0;0;0;3891,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,18,20471,ENSMUSG00000051367,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
10916,cg19646128,0.0000037,0.000015,0.247498957,0.804685941,gain,ns,0.0000201,0.0000254,0.791959663,0.428989781,pos,ns,0.009864941,0.007442177,1.325545081,0.185966439,pos,ns,0.730565425,-0.000410431,0.000255936,-1.603647482,0.109810094,neg,ns,0.680568505,Tcf7l2,Tcf7l2_Intron,19,55887843,55887892,55887891,55887892,50,+,CGCATTCAGAACTGGAGAATAGATTTACCCTTGGCTTCAAATAGTCGACG,"Intron (Tcf7l2-213/Tcf7l2, intron 4 of 13)",19,55741820,55933229,191410,1,Tcf7l2-213,146023,Tcf7l2-213;Tcf7l2-201;Tcf7l2-208;Tcf7l2-211;Tcf7l2-212;Tcf7l2-206;Tcf7l2-204;Tcf7l2-205;Tcf7l2-222;Tcf7l2-215;Tcf7l2-214;Tcf7l2-207;Tcf7l2-202;Tcf7l2-209;Tcf7l2-210;Tcf7l2-217,Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,55,88,21416,ENSMUSG00000024985,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9492,cg27196467,-0.0000713,0.0000159,-4.490457464,0.00001,loss,ns,0.0000214,0.000027,0.791933369,0.42900509,pos,ns,-0.008045307,0.00790174,-1.018169144,0.309391533,neg,ns,0.509491576,0.0000209,0.00027174,0.076923042,0.93873439,pos,ns,0.337211196,Kcnip4,Kcnip4_Exon,5,48889378,48889427,48889426,48889427,50,+,CTTCAATCAGCCCAAACTGTTCCAATAATTTAACAAAAAGCACAATGACG,Promoter (<=1kb),5,48389502,48889557,500056,2,Kcnip4-208,130,Kcnip4-208;Kcnip4-201;Kcnip4-207;Kcnip4-206,Kcnip4;Kcnip4;Kcnip4;Kcnip4,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,6,80334,ENSMUSG00000029088,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17469,cg11215098,-0.0000102,0.00000462,-2.213032185,0.027623594,loss,ns,-0.00000622,0.00000785,-0.791922806,0.429011241,neg,ns,-0.002368537,0.002299784,-1.029895108,0.30386211,neg,ns,0.517323451,-0.0000868,0.0000791,-1.097595793,0.273232842,neg,ns,0.927902184,Tox3,Tox3_Intergenic_upstream,8,90436708,90436757,90436708,90436709,50,-,CGTATTTCTGGCTGACTGAACAATTTATTCTCCAGATGTCACATTGTATT,Distal Intergenic,8,90247040,90348343,101304,2,Tox3-201,-88414,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,19,244579,ENSMUSG00000043668,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17466,cg00389526,-0.0000362,0.00000594,-6.100872158,3.14E-09,loss,yes,-0.00000799,0.0000101,-0.791848136,0.429054718,neg,ns,-0.008763393,0.002956925,-2.963684733,0.003275339,neg,ns,2.484743765,0.0000823,0.000101688,0.80936031,0.418928697,pos,ns,0.939999489,Gatad2b,Gatad2b_threeUTR,3,90358072,90358121,90358072,90358073,50,+,CGCATGCAGTGCCTGTACTGGTGCCTACCATACACGGAAAGCAAAACAGA,3' UTR,3,90293178,90363407,70230,1,Gatad2b-205,64894,Gatad2b-205;Gatad2b-202;Gatad2b-204;Gatad2b-201;Gatad2b-203;Gatad2b-208,Gatad2b;Gatad2b;Gatad2b;Gatad2b;Gatad2b;Gatad2b,0;0;0;0;0;6654,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,6,229542,ENSMUSG00000042390,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3131,cg21387267,-0.0000057,0.00000743,-0.767360121,0.443451478,loss,ns,0.00000999,0.0000126,0.791843601,0.429057359,pos,ns,0.011142413,0.003697788,3.013264622,0.002797659,pos,ns,2.553205286,-0.000428598,0.000127167,-3.370361834,0.00084566,neg,ns,0.843606591,Nol4,Nol4_Exon,18,22921866,22921915,22921914,22921915,50,+,GGGTTTAAATGCATTCTTTTCTGGCACTCTGAGCAGCTCATTAGAAATCG,"Exon (Nol4-202/Nol4, exon 3 of 11)",18,22693381,23038656,345276,2,Nol4-202,116741,Nol4-202;Nol4-204;Nol4-208;Nol4-206;Nol4-209;Nol4-205,Nol4;Nol4;Nol4;Nol4;Nol4;Nol4,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,16,21,319211,ENSMUSG00000041923,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15201,cg24380260,0.000011,0.00000959,1.1447953,0.253177051,gain,ns,0.0000129,0.0000163,0.791735844,0.429120106,pos,ns,-0.004195144,0.004770795,-0.879338446,0.379898905,neg,ns,0.420331958,0.000231418,0.000164067,1.410504011,0.159393546,pos,ns,0.738693748,Rhcg,Rhcg_Intergenic_downstream,7,79572400,79572449,79572400,79572401,50,+,CGTCCCTTTATCCAGAAGAGCGGCTGCAATTGTGCAGGGCACAAAGCCCC,Distal Intergenic,7,79593369,79594929,1561,2,Rhcg-203,22480,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,9,56315,ENSMUSG00000030549,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8606,cg06204250,0.0000947,0.0000166,5.685275817,3.02E-08,gain,yes,-0.0000224,0.0000283,-0.791613299,0.429191472,neg,ns,0.037141872,0.008286265,4.482341877,0.0000104,pos,ns,4.982837829,-0.000911035,0.000284964,-3.197017347,0.001531875,neg,ns,0.397341611,Btrc,Btrc_Intron,19,45440669,45440718,45440669,45440670,50,+,CGGGGAGGGTGTTAAAGTCAAATGTTTAATTAACCCAGCAATGGGCTGCG,"Intron (Btrc-204/Btrc, intron 1 of 2)",19,45363734,45507736,144003,1,Btrc-204,76935,Btrc-204;Btrc-201;Btrc-210;Btrc-206;Btrc-202;Btrc-203;Btrc-208;Btrc-205;Btrc-209,Btrc;Btrc;Btrc;Btrc;Btrc;Btrc;Btrc;Btrc;Btrc,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,63,98,12234,ENSMUSG00000025217,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23632,cg24682415,-0.00000567,0.0000023,-2.462428036,0.014343628,loss,ns,0.00000309,0.00000391,0.791590442,0.429204784,pos,ns,0.000977472,0.001145063,0.853639835,0.393963702,pos,ns,0.40454379,-0.0000653,0.0000394,-1.657473378,0.098435401,neg,ns,0.950632265,Dpyd,Dpyd_Intron,3,119362421,119362470,119362469,119362470,50,-,CAACCATTAGATTAGAACATGTGCACTCCCTGTTAAATTAATGACAACCG,"Intron (Dpyd-201/Dpyd, intron 20 of 22)",3,118562129,119432924,870796,1,Dpyd-201,800292,Dpyd-201,Dpyd,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,14,29,99586,ENSMUSG00000033308,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2350,cg14865782,-0.00000403,0.00000776,-0.520227521,0.603276322,loss,ns,-0.0000104,0.0000132,-0.791574349,0.429214156,neg,ns,-0.00900699,0.003860212,-2.333288609,0.020272246,neg,ns,1.693098141,0.000184306,0.000132752,1.38834072,0.166030141,pos,ns,0.113216835,Tfap2d,Tfap2d_Exon,1,19104657,19104706,19104657,19104658,50,+,CGACTTTATTAACCTGCACAATGCGCGGGCGCTCAAGTCGTCCTGCCTGG,"Exon (Tfap2d-201/Tfap2d, exon 2 of 8)",1,19103022,19166346,63325,1,Tfap2d-201,1635,Tfap2d-201;Tfap2d-202,Tfap2d;Tfap2d,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,23,226896,ENSMUSG00000042596,conserved gene and region,1,19104477,19104754,278,*,278,20,0.615107914,0.848336894,0.071942446,1.04E-12,CpGisland,TRUE,U13,Hc-P
3981,cg21973872,-0.00000675,0.00000296,-2.277545272,0.02343441,loss,ns,-0.00000399,0.00000504,-0.791373912,0.429330901,neg,ns,0.00000238,0.001475472,0.001614998,0.998712457,pos,ns,0.000559533,-0.0000459,0.0000507,-0.90398621,0.366704661,neg,ns,0.951976997,5730522E02Rik,5730522E02Rik_Intron,11,26121434,26121483,26121482,26121483,50,-,TAAGGGTTATCGGCACATTTATTTCAAATGAACTGTCAAACTGCATTACG,"Intron (5730522E02Rik-202/5730522E02Rik, intron 1 of 5)",11,25617668,26210569,592902,2,5730522E02Rik-202,89086,5730522E02Rik-202;5730522E02Rik-201;5730522E02Rik-203,5730522E02Rik;5730522E02Rik;5730522E02Rik,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,90,70626,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18262,cg24020911,-0.0000374,0.0000101,-3.717239781,0.000238937,loss,ns,-0.0000135,0.0000171,-0.791121985,0.429477663,neg,ns,-0.00920648,0.00500883,-1.838050043,0.067011752,neg,ns,1.173849027,0.0000636,0.000172253,0.369272363,0.712176825,pos,ns,0.767620194,Ap3b1,Ap3b1_Intergenic_downstream,13,94619212,94619261,94619260,94619261,50,-,GCCTTGGGCAATGAAATATACATCAGTGCAGAATGAACTGACTGCAAACG,Distal Intergenic,13,94542303,94547867,5565,1,Ap3b1-202,76958,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,33,55,11774,ENSMUSG00000021686,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14604,cg09023775,0.0000679,0.0000125,5.420362377,0.00000012,gain,yes,0.0000168,0.0000213,0.790949307,0.429578275,pos,ns,0.014492008,0.00623925,2.322716209,0.020841527,pos,ns,1.681070456,-0.000303871,0.000214567,-1.416204938,0.157719507,neg,ns,0.260738824,Mctp1,Mctp1_Intron,13,76810700,76810749,76810700,76810701,50,-,CGTTCCCTGGGGAACCGTTCAACTCATGAGGTCTGATTTCACACTTCCAG,"Intron (Mctp1-204/Mctp1, intron 10 of 20)",13,76384535,77031810,647276,1,Mctp1-204,426165,Mctp1-204;Mctp1-201;Mctp1-206,Mctp1;Mctp1;Mctp1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,20,78771,ENSMUSG00000021596,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
61,cg09555320,-0.00000601,0.0000022,-2.731710526,0.006661726,loss,ns,-0.00000296,0.00000374,-0.790948838,0.429578549,neg,ns,0.000929791,0.001095451,0.848774297,0.39666183,pos,ns,0.401579589,-0.0000256,0.0000377,-0.678887819,0.49771546,neg,ns,0.954441121,Kmt5b,Kmt5b_Exon,19,3804399,3804448,3804399,3804400,50,-,CGAAATGACAAAATAGAATTACTGGTGGGTTGTATTGCCGAACTTTCAGA,"Exon (Kmt5b-202/Kmt5b, exon 8 of 11)",19,3767421,3808829,41409,1,Kmt5b-202,36978,Kmt5b-202;Kmt5b-205;Kmt5b-207;Kmt5b-206;Kmt5b-208;Kmt5b-203;Kmt5b-204;Kmt5b-201;Kmt5b-221;Kmt5b-210;Kmt5b-213;Kmt5b-216;Kmt5b-209;Kmt5b-219;Kmt5b-220;Kmt5b-218;Kmt5b-212,Kmt5b;Kmt5b;Kmt5b;Kmt5b;Kmt5b;Kmt5b;Kmt5b;Kmt5b;Kmt5b;Kmt5b;Kmt5b;Kmt5b;Kmt5b;Kmt5b;Kmt5b;Kmt5b;Kmt5b,0;0;0;0;0;0;0;0;0;0;0;0;12679;0;2326;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,3,225888,ENSMUSG00000045098,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6004,cg14154885,0.0000141,0.00000273,5.182169253,0.000000396,gain,yes,-0.00000366,0.00000463,-0.790830686,0.429647398,neg,ns,0.00280969,0.001357578,2.069634273,0.039314747,pos,ns,1.40544451,-0.0000863,0.0000467,-1.848890717,0.065425582,neg,ns,0.089211589,Cxxc5,Cxxc5_Exon,18,35830540,35830589,35830540,35830541,50,-,CGCAGTATGCTCGGTCGCAGATCACTGAGTTCAGACAAAAAGAGGGGTTT,"Exon (Gm29417-201/Gm29417-201, exon 2 of 2)",18,35829397,35859002,29606,1,Cxxc5-202,1143,Cxxc5-202;Cxxc5-201;Cxxc5-206;Cxxc5-203,Cxxc5;Cxxc5;Cxxc5;Cxxc5,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,49,67393,ENSMUSG00000046668,mapped to different genes,18,35830072,35830556,485,*,485,65,0.764948454,0.916477702,0.134020619,8.66E-59,CpGisland,TRUE,U1,Pr-A
1089,cg02981547,0.00009,0.0000121,7.459364916,8.80E-13,gain,yes,-0.0000162,0.0000205,-0.790589426,0.429788006,neg,ns,0.010390277,0.006003426,1.730724531,0.084495988,pos,ns,1.073163913,-0.000288872,0.000206457,-1.399186957,0.162756695,neg,ns,0.069775508,Ptprg,Ptprg_fiveUTR,14,11553491,11553540,11553491,11553492,50,-,CGCTCGCCGGCTTTAAAGTCTCTGCCAGGATCCATGCTCACATGTTACTT,Promoter (<=1kb),14,11553532,12242041,688510,1,Ptprg-201,0,Ptprg-201;Ptprg-204;Ptprg-205,Ptprg;Ptprg;Ptprg,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,8,23,19270,ENSMUSG00000021745,conserved gene but different region,14,11553308,11553499,192,*,192,31,0.755208333,1.152148664,0.161458333,3.11E-31,CpGisland,TRUE,NA,NRS
11577,cg19270384,-0.00000817,0.0000123,-0.665375308,0.506305212,loss,ns,0.0000165,0.0000209,0.790543622,0.429814704,pos,ns,0.00633984,0.006109852,1.037642156,0.300245367,pos,ns,0.522523685,-0.0000348,0.000210117,-0.165489902,0.868666266,neg,ns,0.780574448,Fgf13,Fgf13_Exon,X,59250808,59250857,59250856,59250857,50,+,CTGTGTTCTCTTTGTGGTGTACTTGCTTCAGCGGGCAGCAGAAGATTTCG,"Exon (Fgf13-205/Fgf13, exon 2 of 3)",20,59062145,59568071,505927,2,Fgf13-203,317214,Fgf13-203;Fgf13-205;Fgf13-206;Fgf13-208,Fgf13;Fgf13;Fgf13;Fgf13,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,9,14168,ENSMUSG00000031137,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19817,cg16112044,-0.000000223,0.00000244,-0.091583006,0.927088505,loss,ns,0.00000328,0.00000414,0.790310616,0.429950532,pos,ns,0.000306039,0.001214319,0.252025344,0.80118848,pos,ns,0.096265304,0.0000113,0.0000418,0.271168308,0.786442063,pos,ns,0.941889888,Nr4a1,Nr4a1_Exon,15,101271757,101271806,101271805,101271806,50,+,AAGTACATCTGCCTGGCTAACAAGGACTGCCCTGTGGACAAGAGGCGGCG,"Exon (Nr4a1-202/Nr4a1, exon 4 of 8)",15,101254269,101274795,20527,1,Nr4a1-202,17488,Nr4a1-202;Nr4a1-203;Nr4a1-201;Nr4a1-204,Nr4a1;Nr4a1;Nr4a1;Nr4a1,0;4911;0;-1055,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,15370,ENSMUSG00000023034,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16033,cg00251385,-0.000000938,0.00000176,-0.532757168,0.594583366,loss,ns,0.00000236,0.00000299,0.790309576,0.429951137,pos,ns,0.001408446,0.000876596,1.606722313,0.109133356,pos,ns,0.962042488,-0.0000677,0.0000301,-2.24674499,0.025359817,neg,ns,0.946666604,Acaca,Acaca_Intron,11,84271980,84272029,84272028,84272029,50,-,GGAGTGATTGTAAGTAACGCTTGCCTTAAGAATCTCATTATTGGAACACG,"Intron (Acaca-202/Acaca, intron 25 of 55)",11,84173122,84401651,228530,1,Acaca-202,98858,Acaca-202;Acaca-201,Acaca;Acaca,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,28,28,107476,ENSMUSG00000020532,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18308,cg01578720,0.000197076,0.0000184,10.6827199,6.88E-23,gain,yes,-0.0000248,0.0000313,-0.790296284,0.429958887,neg,ns,0.027910268,0.009181819,3.039731859,0.002569682,pos,ns,2.590120658,-0.000433197,0.000315762,-1.371908358,0.171083961,neg,ns,0.187912189,Gm48316,Gm48316_Intergenic_upstream,13,94707061,94707110,94707109,94707110,50,-,GGCGCAGAACTGGCGGCTTCGCAGAGGCTACAGGTCGAAAATAGAGCACG,Distal Intergenic,13,94752270,94752593,324,1,Gm48316-201,-45209,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,36,42,,NA,mapped to different genes,13,94707063,94707220,158,*,158,11,0.5,1.114102564,0.069620253,0.000000471,CpGisland,TRUE,U13,Hc-P
9431,cg11164048,-0.0000319,0.00000459,-6.948859328,2.18E-11,loss,yes,-0.00000617,0.0000078,-0.790145929,0.430046548,neg,ns,-0.004582228,0.002286195,-2.004302852,0.045907163,neg,ns,1.338119543,0.000234339,0.0000786,2.980581043,0.003104749,pos,ns,0.896631508,Zbtb16,Zbtb16_Intron,9,48736566,48736615,48736614,48736615,50,-,TCGTCCTCCATCAAAACACTTTGTCTTGCATACAAAAATAAGATACAGCG,"Intron (Zbtb16-201/Zbtb16, intron 3 of 6)",9,48654297,48835945,181649,2,Zbtb16-201,99330,Zbtb16-201;Zbtb16-202,Zbtb16;Zbtb16,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,37,235320,ENSMUSG00000066687,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
1960,cg25685053,-0.0000334,0.00000425,-7.867298413,6.09E-14,loss,yes,-0.0000057,0.00000722,-0.790138777,0.430050719,neg,ns,-0.006536454,0.002114687,-3.090978788,0.002176075,neg,ns,2.662326129,-0.000046,0.0000727,-0.63194281,0.527890003,neg,ns,0.876442057,Tfec,Tfec_Intergenic_downstream,6,16607438,16607487,16607438,16607439,50,+,CGGACTGGGCAACATCAGTGGCATAATAGTGGTGGTAAATGGGAGTAATT,Distal Intergenic,6,16834692,16835263,572,2,Tfec-204,227776,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,19,23,21426,ENSMUSG00000029553,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15899,cg04638416,-0.00000227,0.00000135,-1.682960613,0.093389507,loss,ns,0.00000181,0.0000023,0.790040017,0.430108305,pos,ns,-0.000242552,0.000672366,-0.360743597,0.718536824,neg,ns,0.14355097,-0.00000177,0.0000231,-0.076678313,0.938928921,neg,ns,0.968329786,Mta3,Mta3_threeUTR,17,83792722,83792771,83792722,83792723,50,+,CGGCCGTTTGTTGCTATTAATTATGCTGCCATTAGGGCAGAATGTAAGAT,3' UTR,17,83706163,83792873,86711,1,Mta3-203,86559,Mta3-203;Mta3-202;Mta3-204;Mta3-208;Mta3-201;Mta3-207;Mta3-206;Mta3-205,Mta3;Mta3;Mta3;Mta3;Mta3;Mta3;Mta3;Mta3,0;0;0;0;0;0;0;-2651,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,2,116871,ENSMUSG00000055817,conserved gene and region,17,83792546,83792727,182,*,182,16,0.60989011,0.951633987,0.087912088,1.29E-11,CpGisland,TRUE,U10,Tr-S
11319,cg16729150,-0.0000138,0.0000037,-3.739032002,0.000219968,loss,ns,-0.00000497,0.00000629,-0.790016164,0.430122214,neg,ns,-0.003114645,0.001842229,-1.690693273,0.091900531,neg,ns,1.036681977,0.0000391,0.0000634,0.617391279,0.537429896,pos,ns,0.936887451,Gm13532,Gm13532_Intergenic_downstream,2,57565363,57565412,57565363,57565364,50,-,CGGAATGCTAACTTTGCTCAAAGATGTGTAAATGCCACGTGCCCAGATGG,Distal Intergenic,2,57628989,57629228,240,2,Gm13532-201,63865,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,6,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12645,cg08000413,-0.00000856,0.00000293,-2.91891944,0.003769602,loss,ns,0.00000394,0.00000498,0.790011891,0.430124706,pos,ns,0.000519164,0.001459317,0.355758019,0.722263756,pos,ns,0.141304178,-0.000107604,0.0000502,-2.144113047,0.032801288,neg,ns,0.934399049,Scn1a,Scn1a_Exon,2,66351095,66351144,66351095,66351096,50,+,CGTCTTTCAATAGCCGCAAGAGATTCTCTGGTGAAGAAGTTGAAGCTGTC,"Exon (Scn1a-203/Scn1a, exon 2 of 27)",2,66270781,66410064,139284,2,Scn1a-203,58920,Scn1a-203;Scn1a-204;Scn1a-201;Scn1a-202;Scn1a-206;Scn1a-205,Scn1a;Scn1a;Scn1a;Scn1a;Scn1a;Scn1a,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,4,20265,ENSMUSG00000064329,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22433,cg04070150,0.00000753,0.00000737,1.022189956,0.307488024,gain,ns,0.00000989,0.0000125,0.789986274,0.430139644,pos,ns,0.010800534,0.003668343,2.944254339,0.003482095,pos,ns,2.458159366,-0.00041561,0.000126154,-3.294462369,0.001100314,neg,ns,0.161127801,Fam222a,Fam222a_Intergenic_upstream,5,114537642,114537691,114537642,114537643,50,-,CGGCTGTAATTACTTTGGGGACACAGTTAACCTCTCATTAGGAACGCACG,Distal Intergenic,5,114568016,114613220,45205,1,Fam222a-201,-30374,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,16,433940,ENSMUSG00000041930,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
21777,cg10671289,0.0000033,0.00000919,0.358958355,0.7198706,gain,ns,-0.0000123,0.0000156,-0.789984873,0.430140461,neg,ns,-0.000480257,0.004574444,-0.104986979,0.916454036,neg,ns,0.037889312,0.0000849,0.000157315,0.539505925,0.589925097,pos,ns,0.208187406,Ric3,Ric3_Intergenic_upstream,7,109115247,109115296,109115247,109115248,50,+,CGCCTCGCGGCAGTTTAGAATTTCTTGGGTCTCCAAGAAAGGTTCTATTA,Distal Intergenic,7,109034312,109083331,49020,2,Ric3-201,-31916,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,4,320360,ENSMUSG00000048330,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7114,cg08766364,-0.00000615,0.00000455,-1.352037517,0.177348879,loss,ns,0.0000061,0.00000772,0.789825765,0.430233249,pos,ns,-0.002330872,0.002262126,-1.030390124,0.303630143,neg,ns,0.517655116,-0.00000482,0.0000778,-0.061954872,0.950638695,neg,ns,0.850593629,Zfpm2,Zfpm2_Intron,15,41054735,41054784,41054783,41054784,50,+,TTTATACTTCCTTCTTGTTCTTCTTTGGGCTATAGCTTATCAACATGCCG,"Intron (Zfpm2-201/Zfpm2, intron 5 of 7)",15,40655035,41104592,449558,1,Zfpm2-201,399700,Zfpm2-201;Zfpm2-203,Zfpm2;Zfpm2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,41,22762,ENSMUSG00000022306,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12055,cg04261021,-0.0000636,0.00000894,-7.121446063,7.49E-12,loss,yes,-0.000012,0.0000152,-0.789733065,0.430287315,neg,ns,-0.011408249,0.004447921,-2.564849594,0.01079259,neg,ns,1.966874301,0.000115058,0.000152964,0.752194572,0.452504802,pos,ns,0.919573031,Efna5,Efna5_Intron,17,62607546,62607595,62607546,62607547,50,+,CGCCACCCTCTGCAAAGTAGGGTAATGAACCTTGTGCCACCATTGACTTT,"Intron (Efna5-201/Efna5, intron 4 of 4)",17,62604184,62881317,277134,2,Efna5-201,273722,Efna5-201;Efna5-202,Efna5;Efna5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,21,13640,ENSMUSG00000048915,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6810,cg04584667,-0.0000127,0.00000443,-2.870078261,0.004385848,loss,ns,-0.00000594,0.00000753,-0.78959166,0.430369795,neg,ns,-0.002303971,0.002205091,-1.044841884,0.296910099,neg,ns,0.527375031,-0.0000533,0.0000758,-0.702363795,0.482979358,neg,ns,0.945311857,Gm19100,Gm19100_Intergenic_downstream,18,38584396,38584445,38584444,38584445,50,+,AAAATTATACCTGCCCTAGGCCATGGACATATTGTTTTATTAAAGTTCCG,Downstream (1-2kb),18,38582850,38583455,606,1,Gm19100-201,1546,Gm19100-201;Spry4-201,Gm19100;Spry4,1546;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,1,1,100418251,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
154,cg02905739,0.00000682,0.00000544,1.254884799,0.210465798,gain,ns,-0.00000729,0.00000924,-0.789424543,0.430467284,neg,ns,-0.004064724,0.002705694,-1.502285208,0.134041404,neg,ns,0.87276103,-0.0000185,0.000093,-0.199048058,0.842355639,neg,ns,0.816817214,Gria4,Gria4_Exon,9,4424284,4424333,4424332,4424333,50,+,GGAAGTTGGGTTAAAAGTCTGTGCACTCTTTGCCACCTTCATTCTCTTCG,"Exon (Gria4-202/Gria4, exon 16 of 17)",9,4417896,4796142,378247,2,Gria4-202,371809,Gria4-202;Gria4-204;Gria4-201,Gria4;Gria4;Gria4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,16,18,14802,ENSMUSG00000025892,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19549,cg23487071,-0.0000348,0.0000104,-3.330484691,0.000971672,loss,ns,0.000014,0.0000177,0.789290711,0.430545366,pos,ns,-0.006862436,0.005198908,-1.319976303,0.187816792,neg,ns,0.726265582,0.000164428,0.00017879,0.91967197,0.358459265,pos,ns,0.761702061,Gm12448,Gm12448_Intergenic_upstream,3,99666164,99666213,99666212,99666213,50,+,TGCATTGATTTAGAAGCTTGCTACTTGGGGCTCCAGGAACGAATCAAGCG,Distal Intergenic,3,99544408,99545062,655,2,Gm12448-201,-121102,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27384,cg17685731,-0.0000403,0.00000925,-4.354882827,0.0000181,loss,ns,0.0000124,0.0000157,0.789288238,0.430546809,pos,ns,-0.002753894,0.004604664,-0.598066185,0.550232446,neg,ns,0.259453804,0.0000696,0.000158354,0.439652056,0.660495466,pos,ns,0.915494516,Pou2f1,Pou2f1_Intron,1,165935136,165935185,165935184,165935185,50,-,AACAAAGATTGCAGCTGGCAGTTTCCATAATGAAGCTTAATCAGTATGCG,"Intron (Pou2f1-208/Pou2f1, intron 1 of 16)",1,165865154,166002678,137525,2,Pou2f1-208,67493,Pou2f1-205;Pou2f1-208;Pou2f1-206;Pou2f1-216;Pou2f1-209;Pou2f1-204;Pou2f1-201;Pou2f1-202;Pou2f1-213;Pou2f1-203;Pou2f1-215;Pou2f1-214;Pou2f1-211;Pou2f1-212,Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,18,18986,ENSMUSG00000026565,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
19109,cg11967569,0.000000753,0.00000791,0.095205426,0.924213171,gain,ns,-0.0000106,0.0000134,-0.789254035,0.430566765,neg,ns,0.015919036,0.003937362,4.043072,0.0000666,pos,ns,4.176386876,-0.001120359,0.000135406,-8.274099018,3.88E-15,neg,yes,0.630107829,Grb7,Grb7_Exon,11,98452122,98452171,98452170,98452171,50,+,TTCCTGAATGCTGGCAGCTTTCCTGAGATCCAGGGCTTTCTGCAGCTGCG,"Exon (Grb7-201/Grb7, exon 7 of 15)",11,98446834,98455373,8540,1,Grb7-201,5288,Grb7-204;Grb7-201;Grb7-202;Grb7-206;Grb7-205;Grb7-203,Grb7;Grb7;Grb7;Grb7;Grb7;Grb7,5728;0;0;0;0;-1618,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,14786,ENSMUSG00000019312,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11752,cg13448572,-0.0000365,0.0000089,-4.103682945,0.000052,loss,ns,0.0000119,0.0000151,0.789151692,0.430626482,pos,ns,-0.006766138,0.004431219,-1.526924626,0.127799376,neg,ns,0.893471267,0.0000177,0.000152389,0.115945976,0.90777043,pos,ns,0.877423863,Abi2,Abi2_Exon,1,60447336,60447385,60447336,60447337,50,+,CGTAATATGGCTCCCTCGCAGCAGAGCCCTGTGAGGACAGCTTCTGTGAA,"Exon (Abi2-201/Abi2, exon 5 of 9)",1,60409619,60481158,71540,1,Abi2-201,37717,Abi2-201;Abi2-206;Abi2-207;Abi2-210;Abi2-212;Abi2-208;Abi2-205;Abi2-202;Abi2-204;Abi2-203;Abi2-211,Abi2;Abi2;Abi2;Abi2;Abi2;Abi2;Abi2;Abi2;Abi2;Abi2;Abi2,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,9,329165,ENSMUSG00000026782,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25378,cg06626316,0.00000713,0.00000296,2.412265669,0.016434232,gain,ns,0.00000396,0.00000502,0.789099806,0.43065676,pos,ns,0.004097347,0.001471432,2.784597849,0.005688949,pos,ns,2.244967937,-0.0000691,0.0000506,-1.364968941,0.173252633,neg,ns,0.06140517,Id3,Id3_Promoter,4,136140522,136140571,136140522,136140523,50,+,CGCATGACGTCCCACCCTGGCGCCAGGCTGTCTGGGGCTGAGTCTTAGAT,Promoter (2-3kb),4,136143497,136145392,1896,1,Id3-201,-2926,Id3-201;Id3-203;Id3-202,Id3;Id3;Id3,-2926;-3293;-4403,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,9,9,15903,ENSMUSG00000007872,conserved gene and region,4,136140358,136140543,186,*,186,17,0.661290323,0.836065574,0.09139785,1.32E-12,CpGisland,TRUE,NA,NRS
2184,cg27663288,-0.0000118,0.00000765,-1.536892413,0.125339668,loss,ns,0.0000103,0.000013,0.789057383,0.430681516,pos,ns,-0.00246659,0.003805855,-0.648104227,0.517397275,neg,ns,0.286175863,-0.000120981,0.000130883,-0.924346767,0.356024745,neg,ns,0.824118182,Defb41,Defb41_Intergenic_upstream,1,18307899,18307948,18307899,18307900,50,-,CGGCTCTTCCTCATGATTTGCATTTTAGCCAGAGGCGACCAGTTATAAAA,Distal Intergenic,1,18250980,18265138,14159,2,Defb41-201,-42810,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,6,77673,ENSMUSG00000067773,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22986,cg14096781,-0.0000054,0.0000284,-0.190208316,0.849270388,loss,ns,0.000038,0.0000482,0.789023571,0.430701248,pos,ns,0.01050936,0.014119777,0.744300749,0.457258366,pos,ns,0.33983834,-0.000383073,0.000485578,-0.788900632,0.430772996,neg,ns,0.54521116,Gm47912,Gm47912_Intron,13,116575682,116575731,116575682,116575683,50,+,CGTGCCCCTACCACAGCATACTAATTTGCTAGATCAAGTCTGTCAGAATA,"Intron (Gm47914-201/Gm47914-201, intron 1 of 1)",13,116361198,116361694,497,2,Gm47912-201,-213988,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,8,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9949,cg00564054,-0.000048,0.0000121,-3.980810693,0.0000856,loss,ns,0.0000162,0.0000205,0.788986134,0.430723096,pos,ns,0.037812883,0.006001159,6.30092981,1.01E-09,pos,ns,8.994001959,-0.000546517,0.000206379,-2.648117931,0.008508294,neg,ns,0.806004052,Skap2,Skap2_Intron,6,51709132,51709181,51709180,51709181,50,+,AGTCACTGAGAATTCTTTTATGATGAGTCTAAATTCGCCTGACATTCTCG,"Intron (Gm38811-201/Gm38811-201, intron 1 of 1)",6,51859104,51871929,12826,2,Skap2-207,162748,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,19,54353,ENSMUSG00000059182,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23688,cg14405944,-0.000000835,0.00000133,-0.627337581,0.530899757,loss,ns,-0.00000178,0.00000226,-0.78895593,0.430740723,neg,ns,-0.00000913,0.000662336,-0.013783467,0.989011599,neg,ns,0.004798615,0.00000209,0.0000228,0.091816353,0.926903254,pos,ns,0.062323524,Dcun1d3,Dcun1d3_fiveUTR,7,119895551,119895600,119895599,119895600,50,+,AACTCACAGCTGCTCCAGAGGTTCCTCCAGTCAAACCCTTTCTGGAAACG,Promoter (<=1kb),7,119852796,119895745,42950,2,Dcun1d3-201,145,Dcun1d3-201;Dcun1d3-206;Dcun1d3-202;Dcun1d3-203;Dcun1d3-207;Lyrm1-204;Lyrm1-205;Lyrm1-209;Lyrm1-207;Lyrm1-201;Lyrm1-203;Lyrm1-202;Lyrm1-208,Dcun1d3;Dcun1d3;Dcun1d3;Dcun1d3;Dcun1d3;Lyrm1;Lyrm1;Lyrm1;Lyrm1;Lyrm1;Lyrm1;Lyrm1;Lyrm1,0;0;0;0;0;-261;-261;-267;-270;-282;-692;-4508;-4531,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,3,233805,ENSMUSG00000048787,mapped to different genes,7,119895599,119895914,316,*,316,39,0.712025317,0.984030661,0.123417722,7.65E-34,CpGisland,TRUE,U2,Pr-W
13013,cg18987683,-0.00000234,0.00000122,-1.913640338,0.056586899,loss,ns,0.00000164,0.00000208,0.788845756,0.430805025,pos,ns,0.00000236,0.000608877,0.003874958,0.996910731,pos,ns,0.001343729,0.0000158,0.0000209,0.75681279,0.449736826,pos,ns,0.031790745,Kpna4,Kpna4_Exon,3,69126740,69126789,69126788,69126789,50,-,CGCGGCCTTTGTTCTTGAAATTCTTGAGCCGTTGGTTGTCCAGTTTCTCG,Promoter (<=1kb),3,69067149,69127113,59965,2,Kpna4-201,324,Kpna4-201;Kpna4-203;Kpna4-202,Kpna4;Kpna4;Kpna4,0;0;-110,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,5,16649,ENSMUSG00000027782,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
26074,cg22363893,-0.00000217,0.00000477,-0.456191432,0.648571753,loss,ns,0.00000639,0.0000081,0.788633675,0.430928819,pos,ns,0.0000764,0.00237217,0.032204367,0.974329798,pos,ns,0.011294015,0.0000112,0.0000816,0.136745852,0.89132045,pos,ns,0.918740611,Pak3,Pak3_Exon,X,143693458,143693507,143693458,143693459,50,-,CGCTCTATCTTCCCAGGAGGAGGGGATAAAAGTAAAGTATCAGTGGCCGG,"Exon (Pak3-201/Pak3, exon 2 of 16)",20,143518591,143797792,279202,1,Pak3-201,174867,Pak3-201;Pak3-207;Pak3-205;Pak3-206;Pak3-209;Pak3-208;Pak3-204;Pak3-202;Pak3-203;Pak3-210,Pak3;Pak3;Pak3;Pak3;Pak3;Pak3;Pak3;Pak3;Pak3;Pak3,0;0;0;29085;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,Exon,5,9,18481,ENSMUSG00000031284,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4428,cg09285675,0.000096,0.0000207,4.625370006,0.0000055,gain,ns,-0.0000278,0.0000352,-0.788337161,0.431101934,neg,ns,0.020594253,0.010325291,1.994544577,0.046967996,pos,ns,1.328197973,0.000056,0.000355086,0.15763647,0.874845891,pos,ns,0.311725616,Snd1,Snd1_Intron,6,28891689,28891738,28891737,28891738,50,+,ACCTAATTACAGTGCACTACCCTGGGTGGCATGTGTTTTAATAATTAACG,"Intron (Snd1-206/Snd1, intron 16 of 16)",6,28480359,28935162,454804,1,Snd1-206,411330,Snd1-201;Snd1-206,Snd1;Snd1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,9,56463,ENSMUSG00000001424,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6109,cg11724972,-0.000000206,0.0000029,-0.071299765,0.943205158,loss,ns,-0.00000388,0.00000492,-0.788316935,0.431113744,neg,ns,0.001528716,0.001440956,1.060904113,0.289559314,pos,ns,0.538262461,-0.000105343,0.0000496,-2.125813246,0.034309013,neg,ns,0.953727767,Rpl17-ps9,Rpl17-ps9_Intergenic_upstream,7,36075168,36075217,36075168,36075169,50,+,CGCTAGTCATTAGAATATGCTAAAAACCATTGCTTCAGGGCTCAGATTTT,Distal Intergenic,7,36118274,36118828,555,1,Rpl17-ps9-201,-43057,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,14,22,100043872,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22824,cg09574770,0.0000169,0.0000029,5.808550099,1.56E-08,gain,yes,-0.00000389,0.00000493,-0.788309634,0.431118007,neg,ns,0.003760046,0.001444577,2.602869389,0.009689121,pos,ns,2.013715642,-0.000126172,0.0000497,-2.539753312,0.011581182,neg,ns,0.072223457,Faah,Faah_Intron,4,115979563,115979612,115979563,115979564,50,-,CGGTAATTGACTCCTTTCAGTTGATAATTCATGGCTTGCATATGCGCTTT,"Intron (Faah-202/Faah, intron 13 of 14)",4,115967145,116017675,50531,2,Faah-202,38063,Faah-202,Faah,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,20,14073,ENSMUSG00000034171,mapped to different genes,4,115979435,115979564,130,*,130,14,0.707692308,0.870396939,0.107692308,1.85E-11,CpGisland,TRUE,NA,NRS
18526,cg18787121,0.0000186,0.00000487,3.823365061,0.000159129,gain,ns,-0.00000652,0.00000827,-0.788060317,0.4312636,neg,ns,-0.000509287,0.00242327,-0.210165371,0.833676669,neg,ns,0.079002352,0.000187721,0.0000833,2.252576717,0.024985042,pos,ns,0.106487003,Hoxb9,Hoxb9_Exon,11,96272033,96272082,96272033,96272034,50,-,CGAGGACAAAGAGAGGCCGGATCAAAGTAAGTTATAAAAAGTGAGGAAAT,Promoter (<=1kb),11,96271457,96276595,5139,1,Hoxb9-201,576,Hoxb9-201;Hoxb9-202,Hoxb9;Hoxb9,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,22,15417,ENSMUSG00000020875,mapped to different genes,11,96271433,96272051,619,*,619,70,0.675282714,0.992327951,0.113085622,2.33E-57,CpGisland,TRUE,U13,Hc-P
22717,cg11690870,-0.0000105,0.0000055,-1.903845482,0.057856115,loss,ns,-0.00000736,0.00000935,-0.787827679,0.43139948,neg,ns,-0.003306455,0.002738391,-1.207444597,0.228181403,neg,ns,0.641719753,-0.00000223,0.0000942,-0.023719297,0.981091774,neg,ns,0.87737201,Sox6,Sox6_Intron,7,115824867,115824916,115824867,115824868,50,+,CGGAATTTGGCAGGAAAATATAATACAGAATTCTCCTGTCTATGGAACCT,"Intron (Sox6-210/Sox6, intron 2 of 15)",7,115470872,116031047,560176,2,Sox6-210,206131,Sox6-210;Sox6-201;Sox6-202;Sox6-204;Sox6-205;Sox6-203;Sox6-212;Sox6-206;Sox6-209;Sox6-214;Sox6-211;Sox6-208,Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,37,57,20679,ENSMUSG00000051910,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16394,cg19271316,0.00000033,0.00000148,0.223080651,0.823619658,gain,ns,0.00000198,0.00000252,0.787813758,0.431407612,pos,ns,0.0006662,0.00073697,0.903971861,0.366712257,pos,ns,0.435674574,-0.00000163,0.0000253,-0.064118837,0.948916929,neg,ns,0.951112227,Trip12,Trip12_fiveUTR,1,84814880,84814929,84814880,84814881,50,+,CGCAGTGACCCCCCTGGATTGTTATTAGGCCGGTTGGACATTGGCACCTC,5' UTR,1,84721189,84839304,118116,2,Trip12-201,24375,Trip12-201;Trip12-206;Trip12-207;Trip12-205;Trip12-208;Trip12-211;Trip12-214;Trip12-210,Trip12;Trip12;Trip12;Trip12;Trip12;Trip12;Trip12;Trip12,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,11,14897,ENSMUSG00000026219,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24201,cg26947144,-0.000011,0.00000615,-1.792496812,0.074028361,loss,ns,-0.00000823,0.0000104,-0.78765727,0.431499028,neg,ns,0.000126989,0.003059328,0.041508636,0.966917129,pos,ns,0.014610746,-0.0000787,0.00010521,-0.74758238,0.455278793,neg,ns,0.904048176,Macf1,Macf1_Intron,4,123360108,123360157,123360156,123360157,50,+,AGCCAACCTATGGGAGACTGACTGGAAATCGAAGAGCTGGAATCAGAGCG,"Intron (Macf1-207/Macf1, intron 6 of 9)",4,123349633,123369931,20299,2,Macf1-207,9774,Macf1-207;Macf1-203;Macf1-214;Macf1-216;Macf1-209;Macf1-215;Macf1-218;Macf1-217;Macf1-201;Macf1-205;Macf1-202;Macf1-206,Macf1;Macf1;Macf1;Macf1;Macf1;Macf1;Macf1;Macf1;Macf1;Macf1;Macf1;Macf1,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,16,11426,ENSMUSG00000028649,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20558,cg25534242,-0.0000152,0.0000125,-1.218301733,0.224035714,loss,ns,-0.0000167,0.0000212,-0.787635155,0.431511948,neg,ns,-0.004833253,0.006199071,-0.779673853,0.436177709,neg,ns,0.360336533,0.000103024,0.000213186,0.483257901,0.629253761,pos,ns,0.907711604,Gm8748,Gm8748_Intergenic_upstream,8,103479663,103479712,103479711,103479712,50,+,TTAATTAGCTCAATATTTATCTCATCTAATATGCAAATTAAGACACTGCG,Distal Intergenic,8,104071149,104071735,587,1,Gm8748-201,-591437,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,6,667656,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9317,cg02429111,0.00000148,0.00000797,0.185690176,0.852809173,gain,ns,-0.0000107,0.0000135,-0.787614906,0.431523779,neg,ns,-0.00223586,0.003965397,-0.56384278,0.573268795,neg,ns,0.241641698,-0.00000294,0.00013637,-0.02153268,0.982834588,neg,ns,0.846709675,Stx17,Stx17_Intergenic_upstream,4,48092407,48092456,48092407,48092408,50,-,CGTTTTATCTGTAATTAGAGAGATTACATTAAACACTATTATTTGCAGAC,Distal Intergenic,4,48124915,48185911,60997,1,Stx17-203,-32508,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,2,67727,ENSMUSG00000061455,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10847,cg16405519,-0.00000116,0.000000845,-1.372630499,0.17085946,loss,ns,0.00000113,0.00000144,0.7875625,0.431554396,pos,ns,0.000232049,0.000420793,0.551456489,0.581718049,pos,ns,0.235287461,-0.0000138,0.0000145,-0.95632973,0.339650854,neg,ns,0.98194847,Vti1a,Vti1a_threeUTR,19,55627153,55627202,55627201,55627202,50,-,TCCCAGAGGGGCTCATTAAATCATAAAAACTTGACAAGGAAATAATTGCG,3' UTR,19,55316350,55627309,310960,1,Vti1a-202,310803,Vti1a-202;Vti1a-201,Vti1a;Vti1a,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,8,32,53611,ENSMUSG00000024983,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6142,cg13305643,-0.00000407,0.00000609,-0.668573887,0.504264858,loss,ns,-0.00000815,0.0000104,-0.787539397,0.431567895,neg,ns,-0.002539186,0.003032383,-0.837356616,0.403037223,neg,ns,0.394654842,0.0000349,0.000104283,0.334764006,0.738029507,pos,ns,0.874894266,Tenm2,Tenm2_Exon,11,36139720,36139769,36139720,36139721,50,+,CGATGCAGACGCCGTGAGTGCCACAGTCTACTGAGCACACTTCTGGAAGA,"Exon (Tenm2-202/Tenm2, exon 14 of 31)",11,36006656,37235882,1229227,2,Tenm2-202,1096113,Tenm2-202;Tenm2-208;Tenm2-201;Tenm2-204;Tenm2-205,Tenm2;Tenm2;Tenm2;Tenm2;Tenm2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,21,84,23964,ENSMUSG00000049336,conserved gene and region,11,36139608,36139733,126,*,126,10,0.642857143,0.782608696,0.079365079,0.000000572,CpGisland,TRUE,U15,NS
10,cg08167303,-0.0000153,0.00000256,-5.997749411,5.57E-09,loss,yes,0.00000342,0.00000435,0.787504919,0.431588039,pos,ns,-0.003064172,0.001273179,-2.406710073,0.016681562,neg,ns,1.77776329,-0.00000071,0.0000438,-0.016212446,0.987075336,neg,ns,0.932530744,Fam171a1,Fam171a1_Exon,2,3223506,3223555,3223506,3223507,50,-,CGGTGTTTCTTTTGGCCATTTTAGGAGGAATGGCTTTCATACTTTTGGTT,"Exon (Fam171a1-202/Fam171a1, exon 7 of 8)",2,3114224,3227250,113027,1,Fam171a1-202,109282,Fam171a1-202;Fam171a1-204;Fam171a1-203;Fam171a1-201,Fam171a1;Fam171a1;Fam171a1;Fam171a1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,269233,ENSMUSG00000050530,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5187,cg09400505,0.0000006,0.00000976,0.061468012,0.9510261,gain,ns,0.0000131,0.0000166,0.787458927,0.431614912,pos,ns,-0.002349986,0.004857909,-0.483744304,0.628908873,neg,ns,0.201412278,0.0000663,0.000167063,0.397135523,0.691540808,pos,ns,0.749611904,Prrxl1,Prrxl1_threeUTR,14,32630693,32630742,32630741,32630742,50,-,CTACACACACATTAGCATGAATAATTGATAAGAAATTATGTATTACCACG,3' UTR,14,32599407,32649204,49798,1,Prrxl1-203,31286,Prrxl1-203;Prrxl1-204;Prrxl1-202;Prrxl1-201;Prrxl1-205,Prrxl1;Prrxl1;Prrxl1;Prrxl1;Prrxl1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,23,107751,ENSMUSG00000041730,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5875,cg09277592,-0.00000627,0.0000125,-0.499684649,0.617651613,loss,ns,-0.0000168,0.0000213,-0.787427105,0.431633506,neg,ns,0.002299369,0.006243595,0.3682764,0.712918499,pos,ns,0.146960116,-0.000247441,0.000214717,-1.152405564,0.250042344,neg,ns,0.282918645,Cebpa,Cebpa_threeUTR,7,35120370,35120419,35120418,35120419,50,+,CTGACCAGTGACAATGACCGCCTGCGCAAGCGGGTGGAACAGCTGAGCCG,3' UTR,7,35119293,35121928,2636,1,Cebpa-202,1077,Cebpa-202;Cebpa-201,Cebpa;Cebpa,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,2,12606,ENSMUSG00000034957,conserved gene but different region,7,35120086,35120449,364,*,364,43,0.684065934,1.013468014,0.118131868,2.39E-36,CpGisland,TRUE,U1,Pr-A
18813,cg15711227,-0.00000919,0.00000902,-1.019668459,0.308680823,loss,ns,0.0000121,0.0000153,0.787419806,0.431637771,pos,ns,-0.009141389,0.004487421,-2.037113915,0.042487783,neg,ns,1.371735928,-0.0000938,0.000154322,-0.60802598,0.543615432,neg,ns,0.774300683,Gk2,Gk2_Intron,5,97565860,97565909,97565860,97565861,50,+,CGACAGCCTAAGGTTTAAATGATTAGTAACAGGTTTTTGAGTGATTTTCC,"Intron (4930467D21Rik-202/4930467D21Rik-202, intron 4 of 4)",5,97455142,97457021,1880,2,Gk2-201,-108839,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,13,14626,ENSMUSG00000050553,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
864,cg07560681,-0.00000194,0.00000195,-0.996318569,0.31987243,loss,ns,0.00000261,0.00000331,0.787379122,0.431661544,pos,ns,0.0002705,0.000969691,0.278955121,0.780465266,pos,ns,0.10764642,0.0000464,0.0000333,1.390421282,0.165398391,pos,ns,0.067949497,Dmtf1,Dmtf1_fiveUTR,5,9161629,9161678,9161629,9161630,50,-,CGGGCACTTTGGAAGAACCAGGATGGAAGCTCCAAAAAATACCAGGATGG,Promoter (<=1kb),5,9119070,9161671,42602,2,Dmtf1-204,0,Dmtf1-201;Dmtf1-209;Dmtf1-202;Dmtf1-208;Dmtf1-214;Dmtf1-213;Dmtf1-204;Dmtf1-207;Dmtf1-215;Dmtf1-216;Dmtf1-211;Dmtf1-206;Dmtf1-218;Tmem243-202;Tmem243-204,Dmtf1;Dmtf1;Dmtf1;Dmtf1;Dmtf1;Dmtf1;Dmtf1;Dmtf1;Dmtf1;Dmtf1;Dmtf1;Dmtf1;Dmtf1;Tmem243;Tmem243,0;0;0;0;0;0;0;0;0;0;0;0;0;0;5896,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,11,23857,ENSMUSG00000042508,mapped to different genes,5,9161250,9161630,381,*,381,58,0.771653543,1.03338945,0.152230971,2.37E-56,CpGisland,TRUE,U1,Pr-A
23804,cg09333534,0.00000702,0.00000319,2.204916044,0.028194049,gain,ns,0.00000426,0.00000541,0.787292425,0.431712206,pos,ns,0.004048702,0.001585491,2.553594869,0.011140112,pos,ns,1.953110451,-0.0000538,0.0000545,-0.986097072,0.32485449,neg,ns,0.063370088,Lhx5,Lhx5_Promoter,5,120427782,120427831,120427782,120427783,50,-,CGTAGGCTCTTTGCGGCAAAACAGTTTCTCAGTGGTACACCAGTATAATT,Promoter (3-4kb),5,120431699,120441223,9525,1,Lhx5-201,-3917,Lhx5-201,Lhx5,0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,7,14,16873,ENSMUSG00000029595,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
1592,cg18922837,-0.0000236,0.00000667,-3.53303863,0.00047332,loss,ns,-0.00000892,0.0000113,-0.787279328,0.43171986,neg,ns,-0.010017335,0.003318262,-3.018849863,0.002748059,neg,ns,2.560973996,0.000144843,0.000114115,1.269273029,0.205295797,pos,ns,0.849329683,Zfp521,Zfp521_Intron,18,13809983,13810032,13809983,13809984,50,-,CGTACCATCTACAGGGTCTCCTGAGACTAGTAACAGGGGGATATGTGTCA,"Intron (Zfp521-201/Zfp521, intron 5 of 7)",18,13687013,13972787,285775,2,Zfp521-201,162755,Zfp521-201;Zfp521-205;Zfp521-204,Zfp521;Zfp521;Zfp521,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,81,225207,ENSMUSG00000024420,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22800,cg05406154,0.00000199,0.000000655,3.028994979,0.002660024,gain,ns,0.000000876,0.00000111,0.787205383,0.431763074,pos,ns,0.001004847,0.000326167,3.08077175,0.002249738,pos,ns,2.64786813,-0.0000164,0.0000112,-1.458213817,0.145793978,neg,ns,0.013973448,Dmbx1,Dmbx1_Intergenic_upstream,4,115963193,115963242,115963193,115963194,50,-,CGCCGCTCCCCGAGGGGCCGCCAGATTGTTCCCTTCATAATTGATTGACT,Distal Intergenic,4,115915119,115939926,24808,2,Dmbx1-203,-23316,Faah-202,Faah,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,15,42,140477,ENSMUSG00000028707,mapped to different genes,4,115962737,115963443,707,*,707,80,0.684582744,0.96711865,0.113154173,1.72E-65,CpGisland,TRUE,U3,Pr-B
22910,cg27031191,-0.000000524,0.00000128,-0.409947903,0.682127314,loss,ns,0.00000171,0.00000217,0.787132699,0.431805553,pos,ns,0.001405636,0.000635967,2.210234245,0.027819111,pos,ns,1.555656745,-0.0000482,0.0000219,-2.203540887,0.028291707,neg,ns,0.96394262,Gm5357,Gm5357_Intergenic_upstream,8,116124431,116124480,116124431,116124432,50,+,CGATTAATGCTGAGTGCGGGTGGAAAATGCACCCTCTCATTTGCTAACAC,Distal Intergenic,8,116489186,116491109,1924,1,Gm5357-201,-364706,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,15,15,384868,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8879,cg22423049,-0.00000658,0.00000267,-2.462212542,0.01435208,loss,ns,0.00000357,0.00000454,0.787078838,0.431837033,pos,ns,-0.00000945,0.001330245,-0.007104233,0.99433626,neg,ns,0.002466723,-0.0000227,0.0000457,-0.496996371,0.619543889,neg,ns,0.929441165,Sik3,Sik3_Exon,9,46207980,46208029,46207980,46207981,50,-,CGCCGGTTCTCAGATGGGGCTGCGAGCATCCAGGCCTTCAAAGCTCACCT,"Exon (Sik3-204/Sik3, exon 16 of 25)",9,46012820,46224194,211375,1,Sik3-204,195160,Sik3-204;Sik3-202;Sik3-201;Sik3-206,Sik3;Sik3;Sik3;Sik3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,5,70661,ENSMUSG00000034135,conserved gene but different region,9,46207960,46207995,36,*,36,6,0.694444444,1.402597403,0.166666667,0.00000387,CpGisland,TRUE,NA,NRS
15599,cg10516221,-0.00000516,0.00000674,-0.765746025,0.444410067,loss,ns,-0.00000901,0.0000114,-0.787033888,0.431863306,neg,ns,0.002421878,0.003352135,0.722487963,0.470539201,pos,ns,0.327404189,-0.000123678,0.00011528,-1.072851758,0.284172076,neg,ns,0.163272551,Bnc1,Bnc1_Intergenic_upstream,7,82057025,82057074,82057073,82057074,50,+,GTGTTTTTCGTATTTCACATTCTAGCCACAATTTCAACATCCCATCCCCG,Distal Intergenic,7,81966653,81992307,25655,2,Bnc1-201,-64718,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,12173,ENSMUSG00000025105,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12513,cg06123051,0.00000513,0.00000333,1.541432373,0.124231722,gain,ns,-0.00000445,0.00000565,-0.78677348,0.43201553,neg,ns,-0.00381068,0.00165636,-2.300635509,0.022075813,neg,ns,1.656083292,0.000138395,0.000057,2.429599022,0.015683247,pos,ns,0.91986507,Hmbox1,Hmbox1_threeUTR,14,64823456,64823505,64823504,64823505,50,+,GACATACAAGAAACTGCAAGTTATACTGTAAGAACACATGTTAAGGACCG,3' UTR,14,64811600,64949850,138251,2,Hmbox1-201,126345,Hmbox1-201;Hmbox1-206;Hmbox1-202;Hmbox1-205;Hmbox1-209;Hmbox1-210;Hmbox1-203;Hmbox1-207;Hmbox1-204,Hmbox1;Hmbox1;Hmbox1;Hmbox1;Hmbox1;Hmbox1;Hmbox1;Hmbox1;Hmbox1,0;-1160;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,8,219150,ENSMUSG00000021972,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2196,cg10039823,-0.0000289,0.0000107,-2.707267941,0.007160154,loss,ns,-0.0000143,0.0000182,-0.786663867,0.432079615,neg,ns,-0.013068118,0.005321141,-2.455886381,0.014602177,neg,ns,1.835582387,0.0000559,0.000182994,0.305449756,0.760228629,pos,ns,0.556990105,Defb41,Defb41_Intergenic_upstream,1,18416500,18416549,18416500,18416501,50,+,CGGCTTTTTCTGCTGCCTCTGCAGCTGACACCATTCACTGTCAGCTGTCC,Distal Intergenic,1,18250980,18265138,14159,2,Defb41-201,-151362,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,6,77673,ENSMUSG00000067773,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20124,cg23004138,0.000114541,0.000014,8.190715666,6.87E-15,gain,yes,0.0000187,0.0000238,0.786643438,0.432091559,pos,ns,0.015120939,0.006960108,2.172514889,0.030574219,pos,ns,1.514644622,-0.0000295,0.000239358,-0.123446783,0.901833311,neg,ns,0.209542103,Atp5g2,Atp5g2_Promoter,15,102672448,102672497,102672448,102672449,50,+,CGGGCGGCAGAGGGATTTATATGGGCCCGTTATTTCACACCGATCCTCCA,Promoter (<=1kb),15,102665801,102672352,6552,2,Atp5g2-203,-96,Atp5g2-202;Atp5g2-201;Atp5g2-204;Atp5g2-203,Atp5g2;Atp5g2;Atp5g2;Atp5g2,-1321;-4699;-4705;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,10,18,67942,ENSMUSG00000062683,mapped to different genes,15,102672078,102672489,412,*,412,37,0.621359223,0.940117176,0.089805825,1.33E-26,CpGisland,TRUE,U1,Pr-A
11596,cg13550064,0.0000417,0.00000597,6.992350922,1.67E-11,gain,yes,-0.00000797,0.0000101,-0.786629534,0.432099689,neg,ns,0.002701372,0.002969483,0.909711097,0.363681638,pos,ns,0.439278626,-0.0000384,0.00010212,-0.376091201,0.707106345,neg,ns,0.746333935,Arih1,Arih1_threeUTR,9,59393316,59393365,59393364,59393365,50,-,AGATCTTTTTCATAGCCTTCATGCACATGCTGTAACAAAACCCTTCGTCG,3' UTR,9,59388258,59486614,98357,2,Arih1-207,93249,Arih1-207;Arih1-201;Arih1-202;Arih1-206;Arih1-203,Arih1;Arih1;Arih1;Arih1;Arih1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,13,23806,ENSMUSG00000025234,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22125,cg06116160,-0.0000748,0.0000119,-6.274418304,1.18E-09,loss,yes,0.0000159,0.0000203,0.786582732,0.432127053,pos,ns,0.020677809,0.00593713,3.482795594,0.000567566,pos,ns,3.245983522,-0.000915251,0.000204177,-4.48262801,0.0000104,neg,ns,0.576530894,Eif4g2,Eif4g2_Exon,7,111080907,111080956,111080955,111080956,50,+,AGCAGTCTTGGGATAGTGCTGAGGTGCACCCCTACTTCCTCCTCCGCCCG,"Exon (Eif4g2-213/Eif4g2, exon 3 of 22)",7,111067750,111083030,15281,2,Eif4g2-213,2074,Eif4g2-213;Eif4g2-206;Eif4g2-211;Eif4g2-210;Eif4g2-209;Eif4g2-203;Eif4g2-201;Eif4g2-212;Eif4g2-205,Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2,0;0;-4698;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,20,22,13690,ENSMUSG00000005610,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U4,Pr-F
11691,cg19642684,0.00000179,0.00000214,0.837357729,0.403036599,gain,ns,0.00000286,0.00000363,0.786573299,0.432132569,pos,ns,0.002766252,0.001064875,2.597723512,0.009832306,pos,ns,2.007344604,-0.000092,0.0000366,-2.512451023,0.012497076,neg,ns,0.949079958,Baz2b,Baz2b_Exon,2,59983809,59983858,59983809,59983810,50,-,CGGCTAAGGCTGTGGGTGTACCAAGTGTCCCCAAACCACCAAATTCTGAA,"Exon (Baz2b-207/Baz2b, exon 5 of 6)",2,59899363,60125697,226335,2,Baz2b-202,141839,Baz2b-202;Baz2b-201;Baz2b-207;Baz2b-203,Baz2b;Baz2b;Baz2b;Baz2b,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,9,407823,ENSMUSG00000026987,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27692,cg25973493,-0.00000982,0.00000489,-2.009152678,0.045387523,loss,ns,-0.00000653,0.00000831,-0.786397692,0.432235256,neg,ns,-0.000665596,0.002433331,-0.273532617,0.784625974,neg,ns,0.105337319,-0.000085,0.0000837,-1.01590138,0.310468567,neg,ns,0.887647081,Zbtb18,Zbtb18_Intergenic_upstream,1,177364780,177364829,177364780,177364781,50,+,CGAGAAAGCCATAATTGATAAATACAGATTTCATAGAAGAGGCAATTAGA,Distal Intergenic,1,177442351,177447237,4887,1,Zbtb18-209,-77522,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,22,30928,ENSMUSG00000063659,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10726,cg08902786,-0.00000242,0.00000406,-0.59583939,0.551717301,loss,ns,0.00000542,0.00000689,0.786240347,0.432327276,pos,ns,0.003227563,0.002019209,1.5984294,0.110966162,pos,ns,0.954809434,-0.000116213,0.0000694,-1.67355802,0.095226177,neg,ns,0.920153222,Sf3b1,Sf3b1_threeUTR,1,55014874,55014923,55014874,55014875,50,+,CGTGCCTTTGTCTCCATCAGCAGTTCTGACTTCAAGCAGCAGAATAGAAG,3' UTR,1,54985169,55027481,42313,2,Sf3b1-201,12558,Sf3b1-201;Sf3b1-203;Sf3b1-205;Sf3b1-208;Sf3b1-206;Sf3b1-204,Sf3b1;Sf3b1;Sf3b1;Sf3b1;Sf3b1;Sf3b1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,7,81898,ENSMUSG00000025982,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5168,cg12030168,0.0000448,0.0000122,3.682299245,0.000272602,gain,ns,-0.0000162,0.0000206,-0.786216198,0.4323414,neg,ns,-0.009861916,0.006048649,-1.630432862,0.104025603,neg,ns,0.982859757,0.000292368,0.000208013,1.405532584,0.160864368,pos,ns,0.525227463,Prrxl1,Prrxl1_Promoter,14,32598584,32598633,32598632,32598633,50,-,ATATCATAAAGGCTTTCCGCCAGGGAAGCACTTAATAGTGCAGGGGGCCG,Promoter (<=1kb),14,32599407,32649204,49798,1,Prrxl1-203,-823,Prrxl1-203;Prrxl1-204;Prrxl1-202;Prrxl1-201;Prrxl1-205,Prrxl1;Prrxl1;Prrxl1;Prrxl1;Prrxl1,0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,14,23,107751,ENSMUSG00000041730,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
2398,cg11729436,-0.0000364,0.00000932,-3.907667876,0.000114464,loss,ns,0.0000124,0.0000158,0.786197188,0.432352519,pos,ns,-0.008678853,0.00463806,-1.871224855,0.0622557,neg,ns,1.205820881,0.0000213,0.000159502,0.133258821,0.894075155,pos,ns,0.433624445,Tfap2b,Tfap2b_Intergenic_downstream,1,19245270,19245319,19245270,19245271,50,-,CGTGGAGAATTGGCCCATTTGATCCTGGGCTGTTTTATTATTCAACACCA,Distal Intergenic,1,19213879,19219253,5375,1,Tfap2b-203,31440,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,40,21419,ENSMUSG00000025927,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9477,cg24399106,0.0000535,0.00000601,8.910230772,4.44E-17,gain,yes,-0.00000802,0.0000102,-0.786161641,0.43237331,neg,ns,0.011145615,0.002989072,3.728787281,0.000228702,pos,ns,3.640730847,-0.000432761,0.000102794,-4.209987645,0.0000335,neg,ns,0.076851024,Tenm3,Tenm3_fiveUTR,8,48843818,48843867,48843866,48843867,50,-,CGGGGCGAGCTGGACCTGGCTGTGATCATTTATAATCCTTGACTCCTCCG,Promoter (<=1kb),8,48646261,48843951,197691,2,Tenm3-207,84,Tenm3-207,Tenm3,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,7,39,23965,ENSMUSG00000031561,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10434,cg09932687,-0.0000159,0.00000502,-3.17512655,0.001648281,loss,ns,-0.00000671,0.00000853,-0.786095847,0.432411794,neg,ns,-0.008875524,0.002499599,-3.55077997,0.000443701,neg,ns,3.352909386,-0.0000148,0.000086,-0.172593315,0.863083734,neg,ns,0.857747746,Prdm6,Prdm6_Exon,18,53536690,53536739,53536690,53536691,50,+,CGATGTGCAAGGCACTGCGGAGAACAGAATCTAACAGTAGTTCAGTACAG,"Exon (Prdm6-201/Prdm6, exon 3 of 7)",18,53464516,53575857,111342,1,Prdm6-201,72174,Prdm6-201;Prdm6-203;Prdm6-204,Prdm6;Prdm6;Prdm6,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,16,225518,ENSMUSG00000069378,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
758,cg06784108,0.0000126,0.00000257,4.916641651,0.00000143,gain,yes,-0.00000343,0.00000436,-0.786082481,0.432419612,neg,ns,0.002759676,0.001276857,2.161304657,0.031437156,pos,ns,1.502556756,-0.000125415,0.0000439,-2.856117404,0.004578139,neg,ns,0.057098688,Efnb2,Efnb2_Exon,8,8660477,8660526,8660525,8660526,50,-,CACTTACTTGGAGTTCGAGGAATTCCAATAGATAGGCTCTAAAACTATCG,Promoter (<=1kb),8,8617434,8661242,43809,2,Efnb2-201,716,Arglu1-201;Efnb2-201;Efnb2-203,Arglu1;Efnb2;Efnb2,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,3,13642,ENSMUSG00000001300,conserved gene and region,8,8660407,8660538,132,*,132,13,0.590909091,1.13117996,0.098484849,3.82E-10,CpGisland,TRUE,U3,Pr-B
25350,cg11103841,0.00000221,0.000000548,4.032692668,0.0000695,gain,ns,0.000000732,0.000000931,0.786049049,0.432439168,pos,ns,0.000512567,0.00027277,1.879117996,0.06116641,pos,ns,1.213487008,0.0000058,0.00000938,0.618346965,0.536800694,pos,ns,0.014028124,Grhl3,Grhl3_Intron,4,135570348,135570397,135570396,135570397,50,-,TAACACACCTCGTGCACGACAAAAATTTGCTCCTGGCAATCATGGTTTCG,"Intron (Grhl3-201/Grhl3, intron 1 of 15)",4,135541888,135573630,31743,2,Grhl3-201,3233,Grhl3-201,Grhl3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,230824,ENSMUSG00000037188,conserved gene and region,4,135570193,135570472,280,*,280,22,0.592857143,0.943627451,0.078571429,9.57E-15,CpGisland,TRUE,NA,NRS
23401,cg21367214,-0.0000269,0.00000754,-3.566047087,0.000419614,loss,ns,-0.0000101,0.0000128,-0.786001029,0.432467258,neg,ns,-0.007308374,0.003752913,-1.947386831,0.052391022,neg,ns,1.28074313,0.0000963,0.000129062,0.74644056,0.455967021,pos,ns,0.876196286,Ptprf,Ptprf_Intron,4,118256536,118256585,118256584,118256585,50,-,CTGCCTCCATCTTGTTGAGTTTTAATTAAATTAAATGAGCTAACACTTCG,"Intron (Ptprf-201/Ptprf, intron 6 of 32)",4,118208213,118291405,83193,2,Ptprf-201,34820,Ptprf-201;Ptprf-207,Ptprf;Ptprf,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,9,19268,ENSMUSG00000033295,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12291,cg07578168,-0.000000945,0.0000135,-0.070041461,0.94420582,loss,ns,0.000018,0.0000229,0.785838687,0.43256223,pos,ns,0.015277381,0.00671675,2.274519858,0.023617717,pos,ns,1.626762095,-0.000826441,0.000230988,-3.577846525,0.000401844,neg,ns,0.58594175,Fign,Fign_Intergenic_downstream,2,63856644,63856693,63856644,63856645,50,-,CGGTCAGGAGATGTTAGGCAACATTAACTGCCTGCACATTTCTGCAAGGC,Distal Intergenic,2,63980447,64097988,117542,2,Fign-202,241344,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,28,84,60344,ENSMUSG00000075324,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10236,cg12290755,-0.0000445,0.0000152,-2.922988463,0.003722011,loss,ns,0.0000203,0.0000259,0.785831936,0.43256618,pos,ns,0.001002451,0.007579801,0.132252977,0.894869998,pos,ns,0.048240052,-0.000221386,0.000260669,-0.849299128,0.396370253,neg,ns,0.162361871,Chd8,Chd8_fiveUTR,14,52257743,52257792,52257743,52257744,50,+,CGCCTTCCGGCGGAGCATGGCCAGCCCTCGCCTCAATCTAGCTTGCTAGT,Promoter (<=1kb),14,52198151,52257780,59630,2,Chd8-212,0,Chd8-212;Chd8-211;Rab2b-201;Rab2b-203;Rab2b-208;Rab2b-202,Chd8;Chd8;Rab2b;Rab2b;Rab2b;Rab2b,0;-20;0;0;11314;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,12,67772,ENSMUSG00000053754,conserved gene and region,14,52257389,52258112,724,*,724,63,0.671270718,0.775806644,0.087016575,5.74E-44,CpGisland,TRUE,U1,Pr-A
4723,cg06433110,-0.0000131,0.00000681,-1.9180243,0.056026415,loss,ns,-0.00000909,0.0000116,-0.785627564,0.432685758,neg,ns,-0.003214982,0.003388559,-0.948775583,0.343473802,neg,ns,0.464106383,-0.000184454,0.000116532,-1.582857546,0.114473579,neg,ns,0.070290101,Ube2h,Ube2h_Intron,6,30300567,30300616,30300567,30300568,50,-,CGGCCTTTTGCCTGCATACGCTTTTCCAAAACAAGCAGCTCTAGCCTTCA,"Intron (Ube2h-202/Ube2h, intron 1 of 6)",6,30211289,30304539,93251,2,Ube2h-202,3923,Ube2h-202;Ube2h-201;Ube2h-204,Ube2h;Ube2h;Ube2h,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,2,22214,ENSMUSG00000039159,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
7190,cg16865908,-0.0000101,0.00000765,-1.319502428,0.187974876,loss,ns,0.0000102,0.000013,0.785451123,0.432789009,pos,ns,0.003059714,0.003807348,0.803633867,0.422224237,pos,ns,0.37445684,0.000350929,0.000130934,2.680187532,0.007751446,pos,ns,0.221572311,Gm48736,Gm48736_Exon,9,41581933,41581982,41581981,41581982,50,+,CTCTCAGTCCCTGAGACCCTAACTTGTGATGTTTACCGTTTAAATCCACG,"Exon (Gm28119-201/Gm28119-201, exon 1 of 2)",9,41513525,41513780,256,2,Gm48736-201,-68153,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
23419,cg22344971,-0.000011,0.0000185,-0.593337283,0.553388094,loss,ns,0.0000246,0.0000314,0.78542598,0.432803724,pos,ns,0.014152661,0.009187504,1.54042511,0.124476872,pos,ns,0.904911332,-0.000873834,0.000315957,-2.765669841,0.006021235,neg,ns,0.150041852,Gm5672,Gm5672_Intergenic_downstream,14,118322343,118322392,118322391,118322392,50,+,TGTGTCCACATTATCCAGGATTATCTCTTTTTCCTGAAGCCTGCCACCCG,Distal Intergenic,14,118375261,118376194,934,2,Gm5672-201,53802,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,9,435422,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
6315,cg25121110,-0.00000398,0.00000194,-2.049996036,0.041205741,loss,ns,-0.00000259,0.0000033,-0.785368961,0.432837094,neg,ns,-0.000297319,0.000965595,-0.307913092,0.758355244,neg,ns,0.120127306,-0.0000216,0.0000332,-0.649762408,0.516326877,neg,ns,0.945407348,Tshz3,Tshz3_Intergenic_downstream,7,36873703,36873752,36873703,36873704,50,+,CGCAGCTTGGCCATTTTGAGCACATATGCTAGAACTAAGTCTTTTTGGCC,Distal Intergenic,7,36698217,36702113,3897,1,Tshz3-202,175486,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,21,58,243931,ENSMUSG00000021217,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24984,cg08324267,-0.00000898,0.00000267,-3.365766937,0.000859362,loss,ns,-0.00000356,0.00000453,-0.785364514,0.432839697,neg,ns,0.003416104,0.00132756,2.573219885,0.010540447,pos,ns,1.977140952,-0.000256938,0.0000457,-5.62785206,4.08E-08,neg,yes,0.929500223,Atrn,Atrn_Exon,2,130961539,130961588,130961539,130961540,50,+,CGATTTTTCCGTTACTTGCACACAGCTGTGATAGTGAGTGGAACCATGCT,"Exon (Atrn-201/Atrn, exon 10 of 29)",2,130906495,131030333,123839,1,Atrn-201,55044,Atrn-201;Atrn-203,Atrn;Atrn,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,11990,ENSMUSG00000027312,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18227,cg16338035,-0.0000213,0.0000125,-1.69777073,0.090554575,loss,ns,0.0000167,0.0000213,0.78527628,0.432891339,pos,ns,-0.00424738,0.006230396,-0.681719144,0.495925547,neg,ns,0.304583519,0.000239736,0.000214263,1.118888718,0.264053851,pos,ns,0.250383432,Dipk2a,Dipk2a_Exon,9,94537780,94537829,94537780,94537781,50,+,CGAGTGCAGCACCATCAGCACCAACAGGCTGCCCAGCGCCGCCAGCTTCA,Promoter (<=1kb),9,94517864,94538081,20218,2,Dipk2a-201,252,Dipk2a-201,Dipk2a,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,68861,ENSMUSG00000045414,conserved gene and region,9,94537007,94538912,1906,*,1906,232,0.72455404,0.939578606,0.121720881,5.91E-197,CpGisland,TRUE,U1,Pr-A
27818,cg26566168,-0.0000255,0.0000068,-3.754039827,0.000207741,loss,ns,-0.00000906,0.0000115,-0.785178154,0.432948776,neg,ns,-0.005783526,0.003382269,-1.709954728,0.088274844,neg,ns,1.054163042,0.00000865,0.000116316,0.074348599,0.94078096,pos,ns,0.902180232,Esrrg,Esrrg_Exon,1,188043471,188043520,188043519,188043520,50,+,GTGGGAGCTACAGTTCAACCATGAATGGCCATCAGAACGGACTTGACTCG,"Exon (Esrrg-204/Esrrg, exon 4 of 4)",1,187608791,188043502,434712,1,Esrrg-204,434680,Esrrg-204;Esrrg-203;Esrrg-201;Esrrg-202,Esrrg;Esrrg;Esrrg;Esrrg,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,60,26381,ENSMUSG00000026610,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26183,cg17438107,-0.0000195,0.00000823,-2.373534778,0.018227986,loss,ns,-0.000011,0.000014,-0.785010841,0.433046719,neg,ns,-0.01226022,0.004093856,-2.994785517,0.002967676,neg,ns,2.527583463,0.000218324,0.000140787,1.550736639,0.121985083,pos,ns,0.859492893,Sox5,Sox5_Intron,6,144256250,144256299,144256250,144256251,50,+,CGAGGCTCATGTTGGATTAATAACTCCAAACAAAGAACAAAAGGAAATTG,"Intron (Sox5-209/Sox5, intron 4 of 13)",6,143843739,144781977,938239,2,Sox5-209,525678,Sox5-209;Sox5-212,Sox5;Sox5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,71,20678,ENSMUSG00000041540,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21179,cg07241980,-0.0000429,0.0000065,-6.600121192,1.78E-10,loss,yes,-0.00000866,0.000011,-0.784967482,0.433072104,neg,ns,-0.006574262,0.00323271,-2.033669245,0.04283629,neg,ns,1.368188146,0.000244674,0.000111173,2.200845306,0.028483988,pos,ns,0.920267743,Zfp644,Zfp644_Intron,5,106640606,106640655,106640606,106640607,50,+,CGAAGTGGTAAATTCAGTGTTAATGAGTGGCTTCACTGTTACCACCTCAG,"Intron (Gm28039-201/Gm28039-201, intron 1 of 2)",5,106616739,106696830,80092,2,Zfp644-204,56175,Zfp644-204;Zfp644-201;Zfp644-205;Zfp644-203;Zfp644-208;Zfp644-209;Zfp644-213;Zfp644-206;Zfp644-216;Zfp644-207;Zfp644-212,Zfp644;Zfp644;Zfp644;Zfp644;Zfp644;Zfp644;Zfp644;Zfp644;Zfp644;Zfp644;Zfp644,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,10,52397,ENSMUSG00000049606,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9242,cg15330270,-0.000048,0.00000666,-7.206647858,4.39E-12,loss,yes,0.00000889,0.0000113,0.784937928,0.433089406,pos,ns,-0.001955583,0.003317045,-0.589555728,0.555917962,neg,ns,0.254989293,-0.000152406,0.000114073,-1.336043273,0.18251506,neg,ns,0.890140348,Cadm1,Cadm1_Exon,9,47836677,47836726,47836677,47836678,50,-,CGAGGAATGAAAAGAAAAACGATTTGTTTTTACTTGTAAGGCCTTACTCA,"Exon (Cadm1-209/Cadm1, exon 10 of 12)",9,47530173,47853385,323213,1,Cadm1-204,306504,Cadm1-204;Cadm1-209;Cadm1-206;Cadm1-202;Cadm1-203;Cadm1-211;Cadm1-201,Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,13,77,54725,ENSMUSG00000032076,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14527,cg24523225,0.00000164,0.00000173,0.951574914,0.342053927,gain,ns,-0.0000023,0.00000293,-0.78486235,0.433133656,neg,ns,0.000432596,0.000858738,0.503757732,0.614789429,pos,ns,0.211273609,-0.0000308,0.0000295,-1.043215119,0.29766151,neg,ns,0.961843815,Smad2,Smad2_Exon,18,76304662,76304711,76304710,76304711,50,-,CTACAGTGGTTGGACAAAGTATTAACTCAGATGGGATCCCCTTCAGTGCG,"Exon (Smad2-205/Smad2, exon 11 of 11)",18,76241580,76310963,69384,1,Smad2-205,63082,Smad2-205;Smad2-202;Smad2-207;Smad2-201;Smad2-204;Smad2-203,Smad2;Smad2;Smad2;Smad2;Smad2;Smad2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,17126,ENSMUSG00000024563,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9681,cg22855949,-0.0000222,0.00000818,-2.718030164,0.006936689,loss,ns,-0.0000109,0.0000139,-0.784786683,0.43317796,neg,ns,-0.015284171,0.004068999,-3.756248681,0.000205996,neg,ns,3.686140767,0.000156631,0.000139933,1.119334714,0.263863902,pos,ns,0.747580688,Gm7481,Gm7481_Intergenic_upstream,12,49946079,49946128,49946127,49946128,50,-,AGCACAATCCACTTACAAATCAGTTACAAGGAAATATTAAAAATAGCTCG,Distal Intergenic,12,49840757,49841751,995,2,Gm7481-201,-104377,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,27,37,665077,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16288,cg23384863,0.00000126,0.00000416,0.303802675,0.761482036,gain,ns,0.00000554,0.00000707,0.784775716,0.433184382,pos,ns,0.006380601,0.002069825,3.08267666,0.002235818,pos,ns,2.650563495,-0.000241755,0.0000712,-3.396338061,0.000771953,neg,ns,0.892674956,Lrpprc,Lrpprc_Intron,17,84716335,84716384,84716335,84716336,50,-,CGTTCTGGAACACAAATTTTGCATGTCTGAAGAGCTGTGATTCATCTTAA,"Intron (Lrpprc-201/Lrpprc, intron 31 of 37)",17,84705247,84790558,85312,2,Lrpprc-201,74174,Lrpprc-201;Lrpprc-207,Lrpprc;Lrpprc,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,15,72416,ENSMUSG00000024120,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12945,cg02002334,0.00000564,0.00000457,1.235429027,0.21760631,gain,ns,-0.00000609,0.00000776,-0.784752316,0.433198084,neg,ns,-0.004320944,0.002273133,-1.900876595,0.058245487,neg,ns,1.234737722,0.000120185,0.0000782,1.537432808,0.125207384,pos,ns,0.822348415,Iqschfp,Iqschfp_Exon,3,68618652,68618701,68618652,68618653,50,+,CGACCTGAGAGACATGACTATTGGGCAGCTACAAGTGATAGTCAATGATC,"Exon (Iqschfp-201/Iqschfp, exon 9 of 11)",3,67892232,68626466,734235,1,Iqschfp-201,726420,Iqschfp-201;Schip1-201;Schip1-202;Schip1-205;Schip1-208;Schip1-206;Schip1-203;Schip1-207,Iqschfp;Schip1;Schip1;Schip1;Schip1;Schip1;Schip1;Schip1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,3,100505386,ENSMUSG00000102422,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10566,cg18760167,-0.00000189,0.0000015,-1.258482164,0.209164397,loss,ns,0.000002,0.00000255,0.784715856,0.433219433,pos,ns,0.000755891,0.000747618,1.011065977,0.312773351,pos,ns,0.504770256,0.00000137,0.0000257,0.053285007,0.957539147,pos,ns,0.028869592,Fnip1,Fnip1_fiveUTR,11,54438177,54438226,54438225,54438226,50,+,TTGAAGTGACTAATTTCTGTCATATGACTGAGGCGCCCATGGGGGTGGCG,Promoter (<=1kb),11,54438199,54518235,80037,1,Fnip1-201,0,Fnip1-201,Fnip1,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,7,216742,ENSMUSG00000035992,conserved gene and region,11,54437949,54438290,342,*,342,41,0.722222222,0.932189868,0.119883041,5.68E-35,CpGisland,TRUE,U1,Pr-A
2425,cg15855300,-0.0000143,0.00000509,-2.808251888,0.005297093,loss,ns,-0.00000678,0.00000864,-0.784711442,0.433222018,neg,ns,0.0000454,0.002532396,0.017927232,0.985708437,pos,ns,0.006251526,-0.0000643,0.0000871,-0.738580705,0.460720442,neg,ns,0.886828005,Olig3,Olig3_Intergenic_downstream,10,19414018,19414067,19414066,19414067,50,-,AACCTTCCGGGGGTCATTGGAACAGAGCAGCTGTAGAGACAGCAGGAGCG,Distal Intergenic,10,19356533,19358604,2072,1,Olig3-201,57534,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,9,94222,ENSMUSG00000045591,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16789,cg11128281,0.000000366,0.00000117,0.314155111,0.753614544,gain,ns,0.00000155,0.00000198,0.784582653,0.433297437,pos,ns,-0.00072403,0.000580572,-1.247098949,0.213302585,neg,ns,0.671003882,0.0000148,0.00002,0.743008754,0.458039064,pos,ns,0.981453604,Lrba,Lrba_Exon,3,86532137,86532186,86532137,86532138,50,+,CGGCGACGATTTGTGCGTAACCCTCTAGGATCGACACATCCTGAAGCGAC,"Exon (Lrba-202/Lrba, exon 38 of 51)",3,86224680,86746712,522033,1,Lrba-202,307457,Lrba-202;Lrba-204;Lrba-201;Lrba-208,Lrba;Lrba;Lrba;Lrba,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,17,45,80877,ENSMUSG00000028080,conserved gene but different region,3,86532037,86532200,164,*,164,13,0.506097561,1.239534884,0.079268293,6.06E-09,CpGisland,TRUE,U15,NS
20007,cg27069145,-0.00000392,0.00000243,-1.612761234,0.107813901,loss,ns,0.00000324,0.00000413,0.7844644,0.433366692,pos,ns,0.001378411,0.001208575,1.140525702,0.254947716,pos,ns,0.593548874,-0.0000519,0.0000416,-1.24963435,0.212375779,neg,ns,0.941381727,Spryd3,Spryd3_Exon,15,102130717,102130766,102130765,102130766,50,+,TGATCCAAGCTGTAGTACTGAGGGACCAGCCCCACAGCAATGGTGCCCCG,"Exon (Spryd3-202/Spryd3, exon 4 of 10)",15,102116528,102136192,19665,2,Spryd3-202,5426,Spryd3-202;Spryd3-203;Spryd3-201;Spryd3-204,Spryd3;Spryd3;Spryd3;Spryd3,0;0;-1833;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,223918,ENSMUSG00000036966,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11470,cg19938371,-0.00000468,0.00000162,-2.886535549,0.004168635,loss,ns,-0.00000216,0.00000275,-0.784424463,0.433390083,neg,ns,0.00037072,0.000807114,0.459314739,0.646330079,pos,ns,0.189545632,-0.0000184,0.0000278,-0.663842466,0.507284547,neg,ns,0.050073864,Tsc22d2,Tsc22d2_Exon,3,58416371,58416420,58416371,58416372,50,-,CGGGAACTGACAGCTCCTTGACTGCTGTGTCACAGCTACCCCCGTCGGAG,"Exon (Tsc22d2-201/Tsc22d2, exon 1 of 4)",3,58414715,58466783,52069,1,Tsc22d2-201,1656,Tsc22d2-201;Tsc22d2-203;Tsc22d2-204;Tsc22d2-202,Tsc22d2;Tsc22d2;Tsc22d2;Tsc22d2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,7,72033,ENSMUSG00000027806,conserved gene and region,3,58416287,58416372,86,*,86,8,0.755813954,0.727272727,0.093023256,0.0000038,CpGisland,TRUE,U1,Pr-A
17447,cg10589081,0.00000329,0.00000367,0.89834832,0.369697084,gain,ns,-0.00000489,0.00000623,-0.78440993,0.433398595,neg,ns,-0.000601815,0.001824998,-0.329762211,0.741802356,neg,ns,0.129711792,-0.0000628,0.0000628,-1.000860658,0.31767477,neg,ns,0.887782481,Ankrd17,Ankrd17_Exon,5,90299983,90300032,90300031,90300032,50,+,ACTTACTTGTCCGACTGCCCTGCATTTGCTGTGCTTTCAGCTCTCATACG,"Exon (Ankrd17-201/Ankrd17, exon 3 of 34)",5,90227166,90366577,139412,2,Ankrd17-201,66545,Ankrd17-201;Ankrd17-203;Ankrd17-202;Ankrd17-205;Ankrd17-212;Ankrd17-214;Ankrd17-210,Ankrd17;Ankrd17;Ankrd17;Ankrd17;Ankrd17;Ankrd17;Ankrd17,0;0;0;0;0;0;-4851,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,12,81702,ENSMUSG00000055204,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6823,cg09667338,0.00000501,0.0000053,0.945016302,0.345386523,gain,ns,-0.00000707,0.00000901,-0.784305558,0.433459729,neg,ns,0.007062781,0.002639383,2.67592171,0.007848496,pos,ns,2.105213575,-0.000175674,0.0000908,-1.935418475,0.053848175,neg,ns,0.888942885,Psmb7,Psmb7_Intron,2,38609332,38609381,38609380,38609381,50,+,GATTTATAAATATTGTGCACTATCTGCTGTGGCATGGCTCTCATGGGACG,"Intron (Psmb7-201/Psmb7, intron 6 of 7)",2,38588036,38644087,56052,2,Psmb7-201,34706,Psmb7-201;Psmb7-202,Psmb7;Psmb7,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,9,19177,ENSMUSG00000026750,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24174,cg25133549,-0.0000613,0.0000119,-5.136611495,0.000000496,loss,yes,-0.0000159,0.0000203,-0.784276298,0.433476868,neg,ns,-0.011109647,0.005939517,-1.870463023,0.062361684,neg,ns,1.205082165,0.0000414,0.00020426,0.202788787,0.839433154,pos,ns,0.90875819,Tnrc6a,Tnrc6a_threeUTR,7,123170393,123170442,123170393,123170394,50,-,CGTGTGAGCACAATGAATCATCCTCAGATGCAGGCTCCATCAGGTATGAA,3' UTR,7,123124177,123193987,69811,1,Tnrc6a-203,46216,Tnrc6a-203;Tnrc6a-201;Tnrc6a-210;Tnrc6a-206;Tnrc6a-205;Tnrc6a-202;Tnrc6a-211;Tnrc6a-204;Tnrc6a-207,Tnrc6a;Tnrc6a;Tnrc6a;Tnrc6a;Tnrc6a;Tnrc6a;Tnrc6a;Tnrc6a;Tnrc6a,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,5,24,233833,ENSMUSG00000052707,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1437,cg04772891,-0.00000073,0.00000169,-0.432703913,0.665530759,loss,ns,-0.00000225,0.00000287,-0.784240466,0.433497858,neg,ns,-0.001625108,0.000839931,-1.934809797,0.053923181,neg,ns,1.268224496,0.0000333,0.0000289,1.151830553,0.250278239,pos,ns,0.969271127,Drosha,Drosha_Exon,15,12881697,12881746,12881697,12881698,50,+,CGTCCACTTTGGGATACGCCCTGCACAGTTGAGTTATGCAGGAGACCCAC,"Exon (Drosha-207/Drosha, exon 17 of 35)",15,12824815,12935290,110476,1,Drosha-207,56882,Drosha-207;Drosha-201;Drosha-205;Drosha-202,Drosha;Drosha;Drosha;Drosha,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,14000,ENSMUSG00000022191,conserved gene and region,15,12881584,12881719,136,*,136,11,0.514705882,1.258200168,0.080882353,0.000000102,CpGisland,TRUE,U10,Tr-S
22302,cg25743630,-0.0000041,0.00000241,-1.700553747,0.090029698,loss,ns,-0.00000321,0.0000041,-0.78422983,0.433504088,neg,ns,0.001163671,0.00120011,0.969637138,0.332983303,pos,ns,0.477577544,0.000044,0.0000413,1.06544993,0.287501498,pos,ns,0.923579232,Setd5,Setd5_Exon,6,113110124,113110173,113110124,113110125,50,+,CGGACGTCTAGCCCTGCATCATTGTTCTTGTTTTTATGTCCCAGTTGACC,"Exon (Setd5-212/Setd5, exon 4 of 18)",6,113077365,113153435,76071,1,Setd5-201,32759,Setd5-209;Setd5-201;Setd5-206;Setd5-205;Setd5-203;Setd5-212;Setd5-202;Setd5-204;Setd5-210;Setd5-214;Setd5-207,Setd5;Setd5;Setd5;Setd5;Setd5;Setd5;Setd5;Setd5;Setd5;Setd5;Setd5,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,19,72895,ENSMUSG00000034269,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27522,cg09660748,-0.00000813,0.00000387,-2.099542406,0.036577293,loss,ns,0.00000516,0.00000658,0.78420652,0.433517744,pos,ns,-0.0006609,0.001926824,-0.34299981,0.731831079,neg,ns,0.135589151,-0.0000206,0.0000663,-0.310651179,0.75627458,neg,ns,0.916427014,Gm5265,Gm5265_Intergenic_downstream,1,168991688,168991737,168991688,168991689,50,-,CGGTTGCCATGGTGATCAGCAGTTGCTGTATGCTGTAAAAATAACCCTCC,Distal Intergenic,1,169453528,169453869,342,2,Gm5265-201,462181,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,13,13,383613,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16601,cg13163729,0.0000226,0.00000393,5.750992,2.13E-08,gain,yes,0.00000523,0.00000667,0.783981895,0.433649341,pos,ns,0.001969875,0.001954661,1.007783144,0.314344544,pos,ns,0.502594074,0.0000139,0.0000672,0.206889587,0.836231915,pos,ns,0.070936851,Six3,Six3_Exon,17,85621446,85621495,85621446,85621447,50,+,CGGCTCCAGGGCCCCCCCGGAAGAGTTGTCCATGTTCCAGCTGCCCACCC,"Exon (Six3-202/Six3, exon 2 of 3)",17,85613608,85625222,11615,1,Six3-202,7838,Six3-202;Six3-203;Six3-201,Six3;Six3;Six3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,24,20473,ENSMUSG00000038805,conserved gene and region,17,85621296,85621464,169,*,169,30,0.810650888,1.124168514,0.177514793,8.81E-32,CpGisland,TRUE,NA,NRS
6979,cg21108662,0.000000129,0.000000568,0.226269059,0.821141279,gain,ns,0.000000757,0.000000965,0.783925964,0.433682111,pos,ns,0.000069,0.000282824,0.244012278,0.807382722,pos,ns,0.092920549,-0.00000814,0.00000973,-0.836491774,0.403522634,neg,ns,0.983312215,Sorbs1,Sorbs1_Exon,19,40321929,40321978,40321929,40321930,50,-,CGTTTAAGTCGTCTCTGGTCCGCTAAAAGTTTCTGCCATAAAATTGCATA,"Exon (Sorbs1-227/Sorbs1, exon 12 of 20)",19,40294753,40376874,82122,2,Sorbs1-227,54896,Sorbs1-227;Sorbs1-225;Sorbs1-208;Sorbs1-212;Sorbs1-211;Sorbs1-213;Sorbs1-226;Sorbs1-221;Sorbs1-201;Sorbs1-202;Sorbs1-203;Sorbs1-204;Sorbs1-206,Sorbs1;Sorbs1;Sorbs1;Sorbs1;Sorbs1;Sorbs1;Sorbs1;Sorbs1;Sorbs1;Sorbs1;Sorbs1;Sorbs1;Sorbs1,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,7,20411,ENSMUSG00000025006,conserved gene and region,19,40321817,40321950,134,*,134,10,0.52238806,1.097461098,0.074626866,0.00000101,CpGisland,TRUE,NA,NRS
17071,cg22911887,0.0000965,0.00000898,10.74706627,4.14E-23,gain,yes,-0.000012,0.0000153,-0.783901679,0.433696341,neg,ns,0.014384921,0.004471214,3.217229349,0.001431198,pos,ns,2.844300389,-0.000252541,0.000153765,-1.642386742,0.101523832,neg,ns,0.525973091,Gata2,Gata2_Promoter,6,88190890,88190939,88190938,88190939,50,+,CAGATAACGACTGGCTATTCATTATCTTCGCCGGGAACAAAGATTAGCCG,Promoter (2-3kb),6,88193891,88207032,13142,1,Gata2-202,-2952,Gata2-202,Gata2,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,7,12,14461,ENSMUSG00000015053,mapped to different genes,6,88190868,88191058,191,*,191,14,0.628272251,0.759874965,0.073298429,3.77E-09,CpGisland,TRUE,U13,Hc-P
4751,cg16160295,-0.00000107,0.00000106,-1.013277968,0.311717609,loss,ns,0.00000141,0.0000018,0.783824518,0.433741554,pos,ns,-0.0000455,0.000527096,-0.086285372,0.93129527,neg,ns,0.030912603,0.0000131,0.0000181,0.723314169,0.470032292,pos,ns,0.971134633,Klhdc10,Klhdc10_fiveUTR,6,30427744,30427793,30427744,30427745,50,+,CGCTTCATTCAGTCCTGTCCCATCATAAGGATCCCTAACAGGTTTTTGAG,5' UTR,6,30401868,30453288,51421,1,Klhdc10-201,25876,Klhdc10-201;Klhdc10-202;Klhdc10-204;Klhdc10-206;Klhdc10-203;Klhdc10-205,Klhdc10;Klhdc10;Klhdc10;Klhdc10;Klhdc10;Klhdc10,0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,1,76788,ENSMUSG00000029775,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19745,cg09566123,0.0000242,0.0000061,3.973312611,0.0000882,gain,ns,-0.00000812,0.0000104,-0.783801181,0.433755229,neg,ns,0.001627964,0.003034722,0.536445644,0.592035335,pos,ns,0.227652372,-0.000192096,0.000104364,-1.840638012,0.066630228,neg,ns,0.878455103,Scn8a,Scn8a_Exon,15,101017112,101017161,101017112,101017113,50,+,CGGAAAACCTGCTTCCTCATCGTGGAGCACAACTGGTTTGAGACCTTCAT,"Exon (Scn8a-201/Scn8a, exon 19 of 27)",15,100870683,101045929,175247,1,Scn8a-201,146429,Scn8a-201;Scn8a-204;Scn8a-213;Scn8a-203;Scn8a-205;Scn8a-208;Scn8a-209,Scn8a;Scn8a;Scn8a;Scn8a;Scn8a;Scn8a;Scn8a,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,18,24,20273,ENSMUSG00000023033,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18832,cg10375861,-0.0000269,0.00000599,-4.492973373,0.00000993,loss,ns,-0.00000797,0.0000102,-0.783725511,0.433799573,neg,ns,-0.000536865,0.002980906,-0.180101409,0.857190629,neg,ns,0.066922585,-0.0000195,0.000102513,-0.190589718,0.848971798,neg,ns,0.875011032,Gm9290,Gm9290_Intergenic_downstream,14,97588287,97588336,97588287,97588288,50,-,CGGAAATTGGCTCCACATCCAGCTGGCTGATTCAGTAAGAAATCAGCTGG,Distal Intergenic,14,97665672,97666291,620,2,Gm9290-201,78004,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,10,668659,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13379,cg19816087,0.00014825,0.0000155,9.547765923,4.17E-19,gain,yes,-0.0000207,0.0000264,-0.783674508,0.433829462,neg,ns,0.03809625,0.007728021,4.929625338,0.00000134,pos,ns,5.87139231,0.000370434,0.000265766,1.393834061,0.164366059,pos,ns,0.538255127,Nr2f2,Nr2f2_Exon,7,70354695,70354744,70354695,70354696,50,-,CGGACAGTAACATATCCCGGATGAGGGTTTCGATGGGGGTTTTACCTACC,"Exon (Nr2f2-201/Nr2f2, exon 3 of 3)",7,70351944,70360593,8650,2,Nr2f2-201,5849,Nr2f2-201;Nr2f2-203;Nr2f2-202;Nr2f2-205;Nr2f2-204;Nr2f2-206,Nr2f2;Nr2f2;Nr2f2;Nr2f2;Nr2f2;Nr2f2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,24,69,11819,ENSMUSG00000030551,conserved gene and region,7,70354695,70354858,164,*,164,11,0.536585366,0.993939394,0.067073171,0.000000682,CpGisland,TRUE,NA,NRS
9652,cg05111000,-0.00000202,0.00000344,-0.586134414,0.558211705,loss,ns,0.00000458,0.00000585,0.783386862,0.433998055,pos,ns,-0.00162926,0.001712632,-0.951319568,0.342183287,neg,ns,0.465741206,0.0000786,0.0000589,1.334856795,0.182902717,pos,ns,0.925402891,Htatip2,Htatip2_Intergenic_upstream,7,49699270,49699319,49699270,49699271,50,-,CGTGACTAATTAGGTTTTGTCACTGTTGCCGGGTCATTATGCCTTAATTT,Distal Intergenic,7,49759115,49762759,3645,1,Htatip2-203,-59845,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,7,53415,ENSMUSG00000039745,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11789,cg23934484,0.000017,0.00000685,2.486363506,0.013431865,gain,ns,-0.00000912,0.0000116,-0.783365464,0.434010598,neg,ns,-0.005149968,0.003411758,-1.509476263,0.132195652,neg,ns,0.87878283,0.000125052,0.00011733,1.065811896,0.287338069,pos,ns,0.644595731,Cdh23,Cdh23_Intron,10,60618219,60618268,60618219,60618220,50,-,CGGCAAATTGCTTGTTGATAAATGAAGCTATTTAAGAGCAAATGATGCTG,"Intron (Cdh23-201/Cdh23, intron 2 of 66)",10,60302748,60657333,354586,2,Cdh23-201,39065,Cdh23-201;Cdh23-203;Cdh23-202;Cdh23-204;Cdh23-205;Cdh23-209;Cdh23-210;Cdh23-213,Cdh23;Cdh23;Cdh23;Cdh23;Cdh23;Cdh23;Cdh23;Cdh23,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,14,22295,ENSMUSG00000012819,conserved gene and region,10,60618152,60618315,164,*,164,10,0.524390244,0.888888889,0.06097561,0.00000612,CpGisland,TRUE,NA,NRS
14993,cg19692957,0.000012,0.00000342,3.499023608,0.000535358,gain,ns,0.00000455,0.0000058,0.783364731,0.434011028,pos,ns,0.002138903,0.001699952,1.258213298,0.209261461,pos,ns,0.679310748,0.0000655,0.0000585,1.120263522,0.26346863,pos,ns,0.069288168,Pou4f2,Pou4f2_Intergenic_downstream,8,78420542,78420591,78420590,78420591,50,+,AATTACTCGCTTTATTACTTTAGCCTGGAGGAATCCTGTAAAAAACAACG,Distal Intergenic,8,78433010,78436645,3636,2,Pou4f2-201,16054,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,23,18997,ENSMUSG00000031688,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4652,cg13065537,-0.00000193,0.00000183,-1.051652112,0.293778263,loss,ns,-0.00000244,0.00000312,-0.783307226,0.434044737,neg,ns,-0.000310932,0.000912881,-0.340604864,0.733631771,neg,ns,0.134521869,-0.0000662,0.0000314,-2.108499655,0.035789885,neg,ns,0.020152995,Hes1,Hes1_Promoter,16,30065111,30065160,30065159,30065160,50,+,AAATCCTTTTGATTGACGTTGTAGCCTCCGGTGCCCTGGGCTCAGGCGCG,Promoter (<=1kb),16,30064384,30065580,1197,1,Hes1-202,727,Hes1-202;Hes1-201;Hes1-203;Hes1-204,Hes1;Hes1;Hes1;Hes1,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,3,20,15205,ENSMUSG00000022528,conserved gene and region,16,30065127,30065227,101,*,101,13,0.742574257,0.935185185,0.128712871,1.01E-11,CpGisland,TRUE,NA,NRS
27591,cg05010174,-0.000000089,0.00000643,-0.013837416,0.988968593,loss,ns,-0.00000855,0.0000109,-0.783135031,0.434145688,neg,ns,0.004483183,0.003200326,1.400852147,0.162258494,pos,ns,0.789792559,-0.000075,0.000110059,-0.681068192,0.496336761,neg,ns,0.828567267,Dok5,Dok5_Exon,2,170832931,170832980,170832931,170832932,50,+,CGAATGTGCCTTGCAGATTACATATGAGTATATCTGTCTTTGGGACGTCC,"Exon (Dok5-201/Dok5, exon 5 of 8)",2,170731807,170879769,147963,1,Dok5-201,101124,Dok5-201,Dok5,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,76829,ENSMUSG00000027560,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21653,cg17385689,0.0000864,0.0000153,5.656473995,3.51E-08,gain,yes,-0.0000203,0.000026,-0.78302111,0.434212482,neg,ns,0.063826404,0.007603452,8.394397779,1.69E-15,pos,yes,14.77172495,-0.00132794,0.000261482,-5.078512643,0.000000658,neg,yes,0.593708633,Zfhx3,Zfhx3_Intron,8,108790313,108790362,108790361,108790362,50,-,CGCATGTTCCTGTAACTTACCAAGCATTTATGACATTGATTTTACAATCG,"Intron (Zfhx3-204/Zfhx3, intron 7 of 15)",8,107942644,108961630,1018987,1,Zfhx3-204,847669,Zfhx3-204;Zfhx3-202;Zfhx3-201,Zfhx3;Zfhx3;Zfhx3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,114,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4575,cg02865946,0.00000352,0.000000559,6.293316876,1.06E-09,gain,yes,-0.000000744,0.00000095,-0.782931933,0.434264772,neg,ns,-0.000436106,0.000278224,-1.567463519,0.118026547,neg,ns,0.928020299,0.0000203,0.00000957,2.118535257,0.034924982,pos,ns,0.991141289,Urm1,Urm1_Exon,2,29845675,29845724,29845675,29845676,50,-,CGCAGACTCGTACAAGAATTGCGTTTGGACAATCAGTGGCGAAGCCCCTG,"Exon (Mir219b-201/Mir219b-201, exon 1 of 1)",2,29841648,29844064,2417,1,Urm1-202,4076,Urm1-205;Urm1-206;Urm1-201;Urm1-204;Urm1-202,Urm1;Urm1;Urm1;Urm1;Urm1,25600;18333;18333;18314;4027,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,10,68205,ENSMUSG00000069020,mapped to different genes,2,29845571,29845950,380,*,380,29,0.62631579,0.7861882,0.07631579,6.66E-19,CpGisland,TRUE,U13,Hc-P
7007,cg27172171,-0.0000103,0.00000409,-2.524765869,0.012076263,loss,ns,-0.00000543,0.00000694,-0.782919656,0.434271971,neg,ns,0.001968927,0.00203371,0.968145152,0.333726594,pos,ns,0.476609184,-0.000153404,0.0000699,-2.19338647,0.029021946,neg,ns,0.944757249,Gm7382,Gm7382_Promoter,15,40533926,40533975,40533926,40533927,50,+,CGCAGATTTTTAAATGGATTAATTTCGCTGCAATCGCAGCCATCTAAGGC,Promoter (3-4kb),15,40537321,40538425,1105,1,Gm7382-201,-3346,Gm7382-201,Gm7382,-3346,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,17,22,664872,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
280,cg22251797,0.0000535,0.00000558,9.591529599,3.01E-19,gain,yes,-0.00000742,0.00000948,-0.782858659,0.43430774,neg,ns,0.005173485,0.002778253,1.862136208,0.0635299,pos,ns,1.197021829,0.00000517,0.0000955,0.054163508,0.956839783,pos,ns,0.141126462,Npas4,Npas4_Promoter,19,4990896,4990945,4990944,4990945,50,+,GGGGCGGGGCCGGGGGAATCCCAGCTCCATATTAGGACAGGAATCCTCCG,Promoter (<=1kb),19,4984355,4990316,5962,2,Npas4-201,-580,Npas4-202;Npas4-201;Npas4-203,Npas4;Npas4;Npas4,0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,16,225872,ENSMUSG00000045903,conserved gene and region,19,4990810,4991026,217,*,217,21,0.723502304,0.743150685,0.096774194,5.19E-16,CpGisland,TRUE,U13,Hc-P
10955,cg06763486,0.00000358,0.00000697,0.51368089,0.607841042,gain,ns,0.00000927,0.0000118,0.782830448,0.434324284,pos,ns,-0.000414957,0.003468205,-0.119646062,0.90484103,neg,ns,0.043427715,0.000186839,0.000119271,1.566504773,0.118250671,pos,ns,0.871932154,Plcl1,Plcl1_Intergenic_downstream,1,55914648,55914697,55914648,55914649,50,+,CGGGTATTCTGATAATTACAGCAATCTTCATCTATAAAAGCTTAAGTAGA,Distal Intergenic,1,55702025,55735227,33203,1,Plcl1-202,212623,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,7,227120,ENSMUSG00000038349,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23757,cg03678139,-0.0000016,0.00000174,-0.919541298,0.358527467,loss,ns,-0.00000231,0.00000295,-0.782785325,0.434350746,neg,ns,0.003625796,0.000864578,4.193715638,0.0000359,pos,ns,4.445435504,-0.000110053,0.0000297,-3.701399775,0.000253682,neg,ns,0.066436668,Foxo6,Foxo6_Intron,4,120282530,120282579,120282578,120282579,50,-,GTTAAAAATAACCGTCTCATCTCTTTAAATTAGTCTGTCTGCAATTACCG,"Intron (Foxo6-201/Foxo6, intron 1 of 1)",4,120267079,120287349,20271,2,Foxo6-201,4770,Foxo6-201,Foxo6,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,14,42,329934,ENSMUSG00000052135,conserved gene and region,4,120282454,120283157,704,*,704,60,0.700284091,0.697259822,0.085227273,2.40E-41,CpGisland,TRUE,U3,Pr-B
12089,cg20097976,-0.00000187,0.00000219,-0.855587124,0.392886991,loss,ns,0.00000291,0.00000372,0.782523306,0.434504424,pos,ns,0.000568687,0.001088483,0.522458138,0.601724542,pos,ns,0.220602275,0.0000114,0.0000374,0.305314196,0.760331765,pos,ns,0.956735978,Fem1b,Fem1b_Exon,9,62796160,62796209,62796160,62796161,50,+,CGAACTGCTCGGGCAGCCAGGCACTTGAGACTCATCTTCATTTGAGTTTT,"Exon (Fem1b-201/Fem1b, exon 2 of 2)",9,62791821,62811934,20114,2,Fem1b-201,15725,Fem1b-201,Fem1b,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,14155,ENSMUSG00000032244,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19705,cg10414253,-0.00000557,0.00000526,-1.059200045,0.29033328,loss,ns,0.00000699,0.00000894,0.782502892,0.434516399,pos,ns,0.001100851,0.00261801,0.420491607,0.67441769,pos,ns,0.171071047,-0.0000266,0.00009,-0.295894566,0.767508711,neg,ns,0.887592705,Dlg3,Dlg3_Exon,X,100772083,100772132,100772083,100772084,50,+,CGCAGGTGGCATCGACAATCCCCATGTCCCTGATGACCCTGGCATCTTTA,"Exon (Dlg3-201/Dlg3, exon 3 of 19)",20,100767722,100818406,50685,1,Dlg3-201,4361,Dlg3-201;Dlg3-204;Dlg3-202;Dlg3-206;Dlg3-203,Dlg3;Dlg3;Dlg3;Dlg3;Dlg3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,11,53310,ENSMUSG00000000881,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17056,cg01296942,-0.000038,0.00000652,-5.826755121,1.42E-08,loss,yes,0.00000867,0.0000111,0.782408571,0.434571728,pos,ns,-0.005698347,0.003247344,-1.754771674,0.080286261,neg,ns,1.095358767,0.00016553,0.000111676,1.482240168,0.139292211,pos,ns,0.884072019,Rpn1,Rpn1_Intergenic_downstream,6,88117141,88117190,88117141,88117142,50,-,CGGTCTCAATGGAATTATTTCAGAATTCTGGTCAACCGCAAGCTCAGGGT,Distal Intergenic,6,88101571,88103387,1817,1,Rpn1-204,15619,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,103963,ENSMUSG00000030062,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U5,En-Sd
18249,cg10444130,0.0000147,0.00000345,4.255495859,0.0000277,gain,ns,0.00000458,0.00000586,0.782107215,0.434748533,pos,ns,0.001088918,0.001716472,0.634393193,0.526292121,pos,ns,0.278773132,-0.0000406,0.000059,-0.687086725,0.492541754,neg,ns,0.088421238,Ap3b1,Ap3b1_Intergenic_downstream,13,94596428,94596477,94596428,94596429,50,+,CGGTTTTAACTGTAGGCTATGATTAGGGGGCTGGTAGTAAGTGCATTAGA,Distal Intergenic,13,94542303,94547867,5565,1,Ap3b1-202,54125,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,33,55,11774,ENSMUSG00000021686,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21290,cg08699863,-0.000144287,0.0000178,-8.117192085,1.13E-14,loss,yes,0.0000236,0.0000302,0.782105587,0.434749488,pos,ns,0.045007764,0.008847052,5.087317811,0.00000063,pos,ns,6.20044944,-0.002121185,0.000304249,-6.971862672,1.89E-11,neg,yes,0.381463799,Kcna2,Kcna2_threeUTR,3,107113854,107113903,107113902,107113903,50,-,CTCCTGAGGGTTTGAACATGCTCTGTGCTTGCCCCAGTTCTGCCTTCACG,3' UTR,3,107101567,107115005,13439,1,Kcna2-201,12287,Kcna2-201,Kcna2,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,4,16490,ENSMUSG00000040724,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3050,cg12934046,0.0000323,0.0000046,7.017472538,1.43E-11,gain,yes,0.00000611,0.00000782,0.7819304,0.434852289,pos,ns,0.003371783,0.002290709,1.471938825,0.142051848,pos,ns,0.847553111,0.000117632,0.0000788,1.493217798,0.136397243,pos,ns,0.071706785,Pou3f2,Pou3f2_Exon,4,22486985,22487034,22487033,22487034,50,-,CCGAGGGCTTGGGGCATTTGAGGAAATGGCTCTCCAGAGCCCCCTTGACG,"Exon (Pou3f2-201/Pou3f2, exon 1 of 1)",4,22482780,22488366,5587,2,Pou3f2-201,1332,Pou3f2-201,Pou3f2,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,18,18992,ENSMUSG00000095139,conserved gene and region,4,22487033,22487110,78,*,78,8,0.628205128,1.04,0.102564103,0.00000181,CpGisland,TRUE,U13,Hc-P
1049,cg06519225,-0.000016,0.00000459,-3.486037307,0.000560991,loss,ns,0.0000061,0.0000078,0.781840677,0.434904945,pos,ns,-0.004452145,0.002285464,-1.948026804,0.052314047,neg,ns,1.28138168,0.0000297,0.0000786,0.378253765,0.705500976,pos,ns,0.907373421,Gm14481,Gm14481_Promoter,X,11216100,11216149,11216148,11216149,50,+,CTCATATGTTTTCAGTGAGCAATGACAGGGAGCCAAATTGCTTTATTCCG,Promoter (4-5kb),20,11220607,11221235,629,1,Gm14481-201,-4458,Gm14481-201,Gm14481,-4458,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,5,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7456,cg20895555,0.0000638,0.00000867,7.355260651,1.72E-12,gain,yes,-0.0000115,0.0000147,-0.781764794,0.434949481,neg,ns,0.008123222,0.004314966,1.882569231,0.060695133,pos,ns,1.216846136,-0.000185965,0.000148391,-1.253206672,0.211074895,neg,ns,0.020819196,Pou3f3,Pou3f3_Promoter,1,42695581,42695630,42695581,42695582,50,+,CGACGCTCTGCCTAAATTAAAAAGCAACCAATCGGAACGGCCGGAAGGGG,Promoter (<=1kb),1,42694925,42703176,8252,1,Pou3f3-202,656,Pou3f3-202;Pou3f3-201,Pou3f3;Pou3f3,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,3,37,18993,ENSMUSG00000045515,conserved gene and region,1,42695391,42695839,449,*,449,33,0.634743875,0.816633598,0.073496659,6.76E-21,CpGisland,TRUE,U3,Pr-B
17713,cg09922950,0.0000047,0.000011,0.426483955,0.670051241,gain,ns,-0.0000146,0.0000187,-0.781580211,0.435057825,neg,ns,0.00277129,0.005479504,0.505755574,0.613387679,pos,ns,0.212264952,-0.000122758,0.00018844,-0.651442705,0.515243381,neg,ns,0.626793712,Gm47083,Gm47083_Intergenic_downstream,10,91430236,91430285,91430236,91430237,50,-,CGCTCTGGGAGAGGAGAAAGTTGGCAGAGAGAAGCCTAGCAAATATATAA,Distal Intergenic,10,91423354,91423735,382,1,Gm47083-201,6931,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13498,cg16762534,-0.00000353,0.00000387,-0.912979389,0.361962862,loss,ns,0.00000514,0.00000658,0.781399789,0.435163742,pos,ns,-0.001319107,0.001926666,-0.684658141,0.494071222,neg,ns,0.306210441,-0.000032,0.0000663,-0.48296581,0.62946091,neg,ns,0.905095841,Rabep1,Rabep1_Exon,11,70887061,70887110,70887061,70887062,50,-,CGAACACAGTGGGCACAGTATAGAGAATCCGCAGAGAGGGAAATAGCTGA,"Exon (Rabep1-201/Rabep1, exon 4 of 18)",11,70844778,70943105,98328,1,Rabep1-201,42283,Rabep1-201;Rabep1-205;Rabep1-208;Rabep1-203;Rabep1-206;Rabep1-204;Rabep1-202;Rabep1-207,Rabep1;Rabep1;Rabep1;Rabep1;Rabep1;Rabep1;Rabep1;Rabep1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,54189,ENSMUSG00000020817,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1609,cg19140157,-0.00000209,0.0000029,-0.719350097,0.472467162,loss,ns,-0.00000385,0.00000493,-0.781303602,0.435220214,neg,ns,-0.00269074,0.001442981,-1.864709595,0.063166941,neg,ns,1.199510157,0.0000383,0.0000496,0.772335246,0.440504302,pos,ns,0.914459346,Zfp521,Zfp521_Exon,18,13846732,13846781,13846732,13846733,50,-,CGACAAATGGCACATTTATATGGCTTGTTGGACGTGTGAGTCTTTAAGTG,"Exon (Zfp521-201/Zfp521, exon 4 of 8)",18,13687013,13972787,285775,2,Zfp521-201,126006,Zfp521-201;Zfp521-205;Zfp521-204;Zfp521-206;Zfp521-203;Zfp521-207;Zfp521-202,Zfp521;Zfp521;Zfp521;Zfp521;Zfp521;Zfp521;Zfp521,0;0;0;-2900;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,81,225207,ENSMUSG00000024420,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4142,cg06974979,0.00000525,0.0000136,0.386101257,0.699686528,gain,ns,0.000018,0.0000231,0.781107099,0.435335597,pos,ns,0.003861874,0.006768199,0.570591076,0.568690219,pos,ns,0.245124241,-0.0000895,0.000232758,-0.384338121,0.700991364,neg,ns,0.575979415,Gm12074,Gm12074_Intergenic_upstream,11,26962293,26962342,26962293,26962294,50,-,CGCCGTTTTATGCATGCAGCGTAATGTCTTTACTTGAAGTGCTGTTTATT,Distal Intergenic,11,27051697,27051915,219,1,Gm12074-201,-89404,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,10,100042367,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15192,cg19224016,0.000000696,0.0000028,0.248323351,0.804048651,gain,ns,-0.00000372,0.00000476,-0.781103348,0.4353378,neg,ns,-0.002232029,0.001395705,-1.599212036,0.110792156,neg,ns,0.955490986,0.0000479,0.000048,0.99710388,0.31949175,pos,ns,0.938147065,Ddx17,Ddx17_threeUTR,15,79533155,79533204,79533203,79533204,50,-,TGAACTGGCTTAGATGCTTCTCTGTAGCCCCATTTGGTTGCCAAGCGCCG,3' UTR,15,79527736,79546741,19006,2,Ddx17-201,13537,Ddx17-201;Ddx17-203;Ddx17-204;Ddx17-202,Ddx17;Ddx17;Ddx17;Ddx17,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,9,14,67040,ENSMUSG00000055065,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14505,cg15476202,-0.00000362,0.0000043,-0.841356589,0.400796733,loss,ns,-0.00000571,0.00000731,-0.781088104,0.435346752,neg,ns,-0.000684941,0.002142063,-0.319757793,0.749367335,neg,ns,0.125305242,-0.00000601,0.0000737,-0.081605812,0.935012841,neg,ns,0.892521932,Puf60,Puf60_Exon,15,76074648,76074697,76074696,76074697,50,+,CTGCTGCCATCTGAAAGACAGTAAAGACAGAGTTCAGTCTGTTGGAGCCG,"Exon (Puf60-202/Puf60, exon 5 of 12)",15,76070182,76080913,10732,2,Puf60-202,6216,Puf60-202;Puf60-204;Puf60-201;Puf60-203;Puf60-207;Puf60-210;Puf60-211;Puf60-208;Puf60-206;Puf60-209;Scrib-201;Scrib-202;Scrib-203,Puf60;Puf60;Puf60;Puf60;Puf60;Puf60;Puf60;Puf60;Puf60;Puf60;Scrib;Scrib;Scrib,0;0;0;-3251;0;0;0;0;3005;2256;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,6,67959,ENSMUSG00000002524,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23572,cg14610189,-0.00000444,0.0000016,-2.768571685,0.005969178,loss,ns,0.00000213,0.00000272,0.780956227,0.435424199,pos,ns,0.0000388,0.00079755,0.048596131,0.961272447,pos,ns,0.017153506,-0.00000197,0.0000274,-0.071960591,0.942679674,neg,ns,0.046062013,Cbx8,Cbx8_fiveUTR,11,119040884,119040933,119040932,119040933,50,+,AGGAGCAGAAAAGCAGCAGCCAGCGCACGACAGACCATAATACTCTCCCG,Promoter (<=1kb),11,119039184,119040911,1728,2,Cbx8-203,0,Cbx8-201;Cbx8-202;Cbx8-203,Cbx8;Cbx8;Cbx8,0;-53;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,6,30951,ENSMUSG00000025578,conserved gene but different region,11,119040751,119041145,395,*,395,40,0.673417722,1.002983559,0.101265823,6.48E-31,CpGisland,TRUE,U1,Pr-A
81,cg19268153,0.00000599,0.00000187,3.206277653,0.001484962,gain,ns,-0.00000248,0.00000317,-0.780746515,0.435547371,neg,ns,-0.000917802,0.000930108,-0.986768999,0.324525436,neg,ns,0.488751258,0.00000631,0.000032,0.197152972,0.843837031,pos,ns,0.039452959,Plag1,Plag1_Promoter,4,3937727,3937776,3937727,3937728,50,+,CGGGATGTTTTGGTGGAAAATGCGGAGAGTTTACTCTCAAAACTGAATTT,Promoter (<=1kb),4,3900996,3938382,37387,2,Plag1-201,606,Chchd7-202;Chchd7-206;Chchd7-213;Chchd7-207;Chchd7-208;Chchd7-201;Chchd7-205;Chchd7-214;Chchd7-203;Chchd7-209;Chchd7-210;Chchd7-211;Chchd7-204;Plag1-201;Plag1-202;Plag1-204;Plag1-203,Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Plag1;Plag1;Plag1;Plag1,-1112;-1112;-1114;-1138;-1138;-1138;-1138;-1138;-1144;-1267;-1646;-1724;-3078;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,8,22,56711,ENSMUSG00000003282,conserved gene and region,4,3937683,3937840,158,*,158,13,0.537974684,1.156531532,0.082278481,3.81E-09,CpGisland,TRUE,U1,Pr-A
25370,cg15861063,0.0000823,0.0000112,7.334262673,1.96E-12,gain,yes,-0.0000149,0.0000191,-0.780558618,0.435657749,neg,ns,0.021211017,0.005587705,3.796015726,0.000176858,pos,ns,3.752374549,-0.000550489,0.000192161,-2.864730388,0.004458621,neg,ns,0.330149876,Gm9341,Gm9341_Intergenic_downstream,7,136083932,136083981,136083932,136083933,50,-,CGTTTTTGCTGGAGGGCACATTTTGCATTTCACACATTTGCAGAAATACA,Distal Intergenic,7,135952798,135953783,986,1,Gm9341-201,131183,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,27,28,668764,NA,mapped to different genes,7,136083812,136083933,122,*,122,9,0.598360656,0.824324324,0.073770492,0.0000048,CpGisland,TRUE,NA,NRS
7187,cg09606715,0.0000841,0.0000141,5.952959246,7.12E-09,gain,yes,-0.0000187,0.000024,-0.780547264,0.435664419,neg,ns,0.026663145,0.007032037,3.791667143,0.000179844,pos,ns,3.745104435,-0.000750767,0.000241831,-3.10450795,0.00208186,neg,ns,0.316926871,Jade1,Jade1_Exon,3,41581227,41581276,41581227,41581228,50,+,CGAGGTCGCCTTCCCAGCAGCAGTGAGGATTCTGACGACAATGGCAGTAA,"Exon (Jade1-201/Jade1, exon 2 of 11)",3,41555731,41616864,61134,1,Jade1-201,25496,Jade1-201;Jade1-210;Jade1-214;Jade1-202;Jade1-209;Jade1-204;Jade1-203;Jade1-211;Jade1-206;Jade1-212,Jade1;Jade1;Jade1;Jade1;Jade1;Jade1;Jade1;Jade1;Jade1;Jade1,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,16,269424,ENSMUSG00000025764,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
24044,cg06020811,-0.00000317,0.00000116,-2.743774848,0.006427457,loss,ns,-0.00000153,0.00000197,-0.780538307,0.435669681,neg,ns,0.000385372,0.000575772,0.669314075,0.503793318,pos,ns,0.297747597,-0.0000294,0.0000198,-1.487133157,0.137996037,neg,ns,0.028958322,Galnt2l,Galnt2l_Intron,8,122282854,122282903,122282854,122282855,50,-,CGGCCCCGATCTGGGCTCAGATAAAGTTTAAAATATTACATTCTGCAAGT,"Intron (Galnt2l-201/Galnt2l, intron 1 of 15)",8,119910841,124345722,4434882,1,Galnt2l-201,2372013,Galnt2l-201;Zfpm1-201,Galnt2l;Zfpm1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,28,,NA,mapped to different genes,8,122281671,122282861,1191,*,1191,159,0.755667506,0.946376544,0.133501259,1.15E-142,CpGisland,TRUE,U1,Pr-A
5797,cg25679007,-0.00000293,0.00000201,-1.459456125,0.145452172,loss,ns,0.00000267,0.00000342,0.780470616,0.43570945,pos,ns,0.000222059,0.001000481,0.221951909,0.824497465,pos,ns,0.083810675,-0.0000135,0.0000344,-0.392328748,0.695084926,neg,ns,0.951531034,Pank1,Pank1_Exon,19,34821120,34821169,34821168,34821169,50,+,GAGCAATGGAGCCAATGTTGTTGGTGATGGTGACCAATGTGGCCCGGGCG,"Exon (Pank1-201/Pank1, exon 5 of 7)",19,34806940,34879455,72516,2,Pank1-201,58286,Pank1-201;Pank1-202;Pank1-204,Pank1;Pank1;Pank1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,75735,ENSMUSG00000033610,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U5,En-Sd
23017,cg05519561,-0.0000051,0.00000155,-3.282447128,0.001146628,loss,ns,0.00000206,0.00000264,0.780315589,0.435800537,pos,ns,0.000414686,0.000773335,0.536230675,0.592183699,pos,ns,0.227543551,-0.0000133,0.0000266,-0.498518746,0.618471979,neg,ns,0.054486044,Mettl23,Mettl23_fiveUTR,11,116852852,116852901,116852852,116852853,50,-,CGAGGTGCGGTAGGTCAGGTTGTCCACCTTGAGGGAGGTCATACCCTCCA,5' UTR,11,116848901,116854263,5363,1,Mettl23-205,3951,Mettl23-201;Mettl23-206;Mettl23-208;Mettl23-203;Mettl23-204;Mettl23-205;Mfsd11-209;Mfsd11-204;Mfsd11-207;Mfsd11-208;Mfsd11-205;Mfsd11-201;Mfsd11-211;Mfsd11-203;Mfsd11-202;Mfsd11-212;Srsf2-201;Srsf2-203;Srsf2-204;Srsf2-202;Srsf2-206;Srsf2-205,Mettl23;Mettl23;Mettl23;Mettl23;Mettl23;Mettl23;Mfsd11;Mfsd11;Mfsd11;Mfsd11;Mfsd11;Mfsd11;Mfsd11;Mfsd11;Mfsd11;Mfsd11;Srsf2;Srsf2;Srsf2;Srsf2;Srsf2;Srsf2,9574;0;9179;9177;9177;0;0;-394;-573;-861;-878;-919;-928;-994;-1125;-1177;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,4,74319,ENSMUSG00000090266,conserved gene and region,11,116852080,116852860,781,*,781,115,0.718309859,1.142335674,0.147247119,3.07E-109,CpGisland,TRUE,U1,Pr-A
17082,cg22144210,0.00000331,0.00000439,0.755367779,0.450601869,gain,ns,-0.00000581,0.00000745,-0.780200619,0.435868095,neg,ns,0.002462287,0.002183146,1.127861658,0.260250509,pos,ns,0.584608412,-0.0000043,0.0000751,-0.057337247,0.95431349,neg,ns,0.901339999,Msi2,Msi2_threeUTR,11,88344581,88344630,88344629,88344630,50,-,GGTCCAGGTCTGAGGACATCACCTAAACAAAGGGCCACTCAGAAACTTCG,3' UTR,11,88339382,88718229,378848,2,Msi2-203,373599,Msi2-203;Msi2-201,Msi2;Msi2,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,36,76626,ENSMUSG00000069769,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16421,cg06619863,-0.0000101,0.00000191,-5.285233949,0.000000237,loss,yes,-0.00000253,0.00000324,-0.779983326,0.435995796,neg,ns,-0.002300058,0.000948578,-2.42474272,0.01589053,neg,ns,1.798861604,0.0000273,0.0000326,0.83657337,0.403476821,pos,ns,0.971595497,Cntln,Cntln_Exon,4,84957087,84957136,84957087,84957088,50,+,CGCTGCACTGACCTGCTAAATGACCTGGAGAAATTGAGGAAGCAGGAAGC,"Exon (Cntln-201/Cntln, exon 5 of 26)",4,84884309,85131921,247613,1,Cntln-201,72778,Cntln-201;Cntln-202;Cntln-204,Cntln;Cntln;Cntln,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,25,338349,ENSMUSG00000038070,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1894,cg23474302,-0.000000699,0.00000143,-0.488120433,0.625809607,loss,ns,-0.0000019,0.00000243,-0.779808702,0.436098437,neg,ns,0.000436883,0.000712783,0.612925825,0.540374776,pos,ns,0.267304931,-0.00000706,0.0000245,-0.287909775,0.77360819,neg,ns,0.040228879,Bicra,Bicra_Promoter,7,16047833,16047882,16047833,16047834,50,+,CGACTCGCAGGTAGAGAGAGTTAAGAGATTTAAAGAGAAATTGCTACATT,Promoter (<=1kb),7,15970672,16047921,77250,2,Bicra-204,39,Bicra-204,Bicra,0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,3,6,243842,ENSMUSG00000070808,conserved gene but different region,7,16047784,16047839,56,*,56,7,0.75,1.149560117,0.125,0.00000289,CpGisland,TRUE,U1,Pr-A
3005,cg23007006,0.00000982,0.00000537,1.827724168,0.068552049,gain,ns,0.00000712,0.00000913,0.779806902,0.436099495,pos,ns,0.001280901,0.002675065,0.478829856,0.632397234,pos,ns,0.199010038,0.0000707,0.000092,0.76856918,0.442734214,pos,ns,0.923576742,Lrmda,Lrmda_Intron,14,22333705,22333754,22333705,22333706,50,-,CGGCAATCATTCTTCAAATAAAAGGTTAGCCAGACAGGACCCTTAATCAA,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,313993,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206;Lrmda-202,Lrmda;Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10533,cg21232018,-0.00000818,0.00000517,-1.583060245,0.114427366,loss,ns,0.00000685,0.00000878,0.779641648,0.436196641,pos,ns,-0.003137805,0.002572433,-1.21978092,0.223475117,neg,ns,0.650770827,0.0000399,0.0000885,0.450681142,0.652534426,pos,ns,0.908984325,Npas3,Npas3_Intron,12,54053017,54053066,54053017,54053018,50,-,CGCCAAATGCAAGCAGACTGCTTAATGCGGGACTAATTAGTATATCCCCT,"Intron (Npas3-204/Npas3, intron 8 of 10)",12,53248157,54069532,821376,1,Npas3-204,804860,Npas3-204;Npas3-201;Npas3-203,Npas3;Npas3;Npas3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,83,103,27386,ENSMUSG00000021010,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1738,cg06341810,0.0000375,0.0000053,7.069662244,1.03E-11,gain,yes,0.00000702,0.00000901,0.779384302,0.43634795,pos,ns,0.008985854,0.002638704,3.405403765,0.000747672,pos,ns,3.126288662,-0.000233198,0.0000907,-2.569821832,0.010642167,neg,ns,0.111654398,Foxp2,Foxp2_Promoter,6,14898328,14898377,14898376,14898377,50,+,TGCAAATAAATATATTTTATGACCACCCATCAACAAACTACGTGCCACCG,Promoter (2-3kb),6,14901349,15441977,540629,1,Foxp2-207,-2972,Foxp2-207;Foxp2-213;Foxp2-220;Foxp2-208;Foxp2-211,Foxp2;Foxp2;Foxp2;Foxp2;Foxp2,0;0;-3074;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,65,114142,ENSMUSG00000029563,conserved gene and region,6,14898368,14898502,135,*,135,10,0.681481482,0.663390663,0.074074074,0.00000108,CpGisland,TRUE,NA,NRS
4921,cg12296383,-0.0000104,0.00000376,-2.766886661,0.005999357,loss,ns,0.00000497,0.00000638,0.779348462,0.436369025,pos,ns,0.002543411,0.001869065,1.360792771,0.174567663,pos,ns,0.758036202,-0.000141038,0.0000643,-2.194214216,0.028961816,neg,ns,0.936688501,Gm11922,Gm11922_Intergenic_upstream,4,31328928,31328977,31328928,31328929,50,-,CGTAACAAACATGTCACCCAGATTTGCATTGGGAATTAAAACATTCTGTA,Distal Intergenic,4,31380472,31380946,475,1,Gm11922-201,-51544,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,100504194,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19793,cg12356120,-0.00000214,0.00000104,-2.051912685,0.041017837,loss,ns,0.00000138,0.00000177,0.779249317,0.436427328,pos,ns,0.000274659,0.000519503,0.528695153,0.597395252,pos,ns,0.223738233,-0.00000694,0.0000179,-0.388238439,0.698106068,neg,ns,0.975125304,Msl2,Msl2_Exon,9,101101989,101102038,101102037,101102038,50,+,GAGCAGACCAGGCTCACTTTGGGCATTAACGTGACTAGCATTGCTGTGCG,"Exon (Msl2-201/Msl2, exon 2 of 2)",9,101074762,101104800,30039,1,Msl2-201,27227,Msl2-202;Msl2-201;Ppp2r3a-202;Ppp2r3a-201,Msl2;Msl2;Ppp2r3a;Ppp2r3a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,19,77853,ENSMUSG00000066415,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26484,cg05870606,0.00000632,0.00000996,0.634551428,0.526189023,gain,ns,-0.0000132,0.0000169,-0.779154484,0.436483099,neg,ns,0.000421194,0.004955219,0.085000093,0.932316184,pos,ns,0.030436777,0.000143456,0.00017041,0.841829577,0.400532298,pos,ns,0.224420637,Casz1,Casz1_Intergenic_upstream,4,148771366,148771415,148771366,148771367,50,-,CGGGTAATGACAGTCTGGGCTAATGAAAGAGGCTTCTCTTCTGGCAAAAA,Distal Intergenic,4,148804429,148954889,150461,1,Casz1-202,-33063,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,14,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
11869,cg02585932,-0.0000253,0.00000671,-3.778086098,0.000189477,loss,ns,-0.00000888,0.0000114,-0.779127791,0.436498798,neg,ns,-0.003274549,0.003339322,-0.980602912,0.327553256,neg,ns,0.484718079,-0.0000421,0.000114839,-0.366954284,0.713903475,neg,ns,0.060495829,Tle3,Tle3_Promoter,9,61370463,61370512,61370511,61370512,50,-,TAAGCAGCCATTCCAAGCACTATTTGCAAGCGGGAGGCTCAGAAGCCTCG,Promoter (1-2kb),9,61372366,61418497,46132,1,Tle3-218,-1903,Tle3-218;Tle3-204;Tle3-201;Tle3-215;Tle3-212;Tle3-208;Tle3-207;Tle3-217;Tle3-202;Tle3-206;Tle3-210;Tle3-205;Tle3-211;Tle3-209,Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3,0;0;0;0;0;0;0;0;0;0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,11,30,21887,ENSMUSG00000032280,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
22865,cg18594127,-0.0000083,0.00000249,-3.337944527,0.000946845,loss,ns,0.00000329,0.00000422,0.778955731,0.436599999,pos,ns,0.001178441,0.001236931,0.952713648,0.341477421,pos,ns,0.466638007,-0.0000785,0.0000425,-1.845016124,0.065988889,neg,ns,0.947018922,Meis2,Meis2_Intron,2,116043279,116043328,116043279,116043280,50,+,CGCCACCAGAGCTTTCCCGTAAATGTCTGAGAACTGATTCCAACAAGAAT,"Intron (Meis2-201/Meis2, intron 7 of 11)",2,115863064,116065047,201984,2,Meis2-201,21719,Meis2-201;Meis2-203;Meis2-205;Meis2-206;Meis2-204;Meis2-202;Meis2-216;Meis2-217;Meis2-213;Meis2-211,Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,45,97,17536,ENSMUSG00000027210,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3996,cg00902032,0.000000545,0.00000203,0.267758927,0.789062953,gain,ns,-0.00000269,0.00000346,-0.778926691,0.436617081,neg,ns,0.00012021,0.001012653,0.118708299,0.905583346,pos,ns,0.043071573,-0.0000117,0.0000348,-0.336334648,0.736846075,neg,ns,0.952072033,L3mbtl3,L3mbtl3_Exon,10,26327707,26327756,26327755,26327756,50,-,CCAGTTGTCAAAATGTACCAGGAAACGATTGTCCACCATATCTGTTACCG,"Exon (L3mbtl3-202/L3mbtl3, exon 11 of 21)",10,26274468,26373956,99489,2,L3mbtl3-202,46200,L3mbtl3-202;L3mbtl3-201;L3mbtl3-203,L3mbtl3;L3mbtl3;L3mbtl3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,6,237339,ENSMUSG00000039089,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14248,cg03256684,-0.000027,0.0000273,-0.986931532,0.324445873,loss,ns,0.0000362,0.0000464,0.778776947,0.43670517,pos,ns,0.09018446,0.013600295,6.631066255,1.48E-10,pos,yes,9.829442196,-0.002310738,0.000467713,-4.940504792,0.00000128,neg,yes,0.62656652,Onecut1,Onecut1_Intergenic_downstream,9,74893808,74893857,74893808,74893809,50,+,CGTGGTGCTTTTTCCGTGCAACCATGCAATGAAACTTTCTTTGATACCAA,Distal Intergenic,9,74866484,74890360,23877,1,Onecut1-202,27324,Onecut1-201;Onecut1-202,Onecut1;Onecut1,0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,28,15379,ENSMUSG00000043013,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20271,cg02379904,-0.00000207,0.00000187,-1.106499721,0.269368188,loss,ns,0.00000247,0.00000317,0.778686155,0.436758585,pos,ns,-0.000213489,0.00092892,-0.229825042,0.818379296,neg,ns,0.087045366,0.0000123,0.0000319,0.38541313,0.700195681,pos,ns,0.030514966,Hoxc5,Hoxc5_fiveUTR,15,102981615,102981664,102981663,102981664,50,+,TTCATACAATAATCTTATGTATGTAAAACCCCGTTACGATGTCGGCGACG,5' UTR,15,102967443,103015676,48234,1,Hoxc5-202,14172,Hoxc5-202;Hoxc9-202;Hoxc9-201,Hoxc5;Hoxc9;Hoxc9,0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,13,134,15424,ENSMUSG00000022485,conserved gene but different region,15,102981651,102982178,528,*,528,70,0.696969697,1.109010712,0.132575758,6.92E-63,CpGisland,TRUE,U3,Pr-B
13183,cg16013798,-0.0000369,0.00000918,-4.019145769,0.0000734,loss,ns,0.0000121,0.0000156,0.778646646,0.436781829,pos,ns,-0.007658555,0.004569899,-1.675869729,0.094771942,neg,ns,1.023320221,-0.000105982,0.000157158,-0.674361171,0.500584289,neg,ns,0.913599548,Tcf4,Tcf4_Intron,18,69675343,69675392,69675343,69675344,50,-,CGAATCAGTGCGCTCCACTGCAGCACCCTGGGAGGCAATTTGACGTTTTA,"Intron (Tcf4-201/Tcf4, intron 16 of 20)",18,69344146,69684343,340198,1,Tcf4-201,331197,Tcf4-201;Tcf4-207;Tcf4-240;Tcf4-254;Tcf4-246;Tcf4-206;Tcf4-202;Tcf4-257;Tcf4-248;Tcf4-205;Tcf4-253;Tcf4-238;Tcf4-249;Tcf4-250;Tcf4-226;Tcf4-230;Tcf4-234;Tcf4-258;Tcf4-252;Tcf4-243;Tcf4-204;Tcf4-222;Tcf4-255;Tcf4-203;Tcf4-251;Tcf4-214,Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,42,66,21413,ENSMUSG00000053477,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22160,cg09453226,-0.00000185,0.00000209,-0.884121748,0.377315667,loss,ns,-0.00000276,0.00000355,-0.778530986,0.436849881,neg,ns,0.000270926,0.001040072,0.260487887,0.794660399,pos,ns,0.099818429,0.0000126,0.0000358,0.351499384,0.725452523,pos,ns,0.954961449,Wdr59,Wdr59_Exon,8,111472613,111472662,111472661,111472662,50,-,TGCACAGCGCACAGTACCGGGAAGTCGTTAATTGCTTGTATGGACCAACG,"Exon (Wdr59-201/Wdr59, exon 19 of 27)",8,111448797,111522092,73296,2,Wdr59-202,49430,Wdr59-202;Wdr59-201;Wdr59-203,Wdr59;Wdr59;Wdr59,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,319481,ENSMUSG00000031959,conserved gene and region,8,111472620,111472701,82,*,82,9,0.56097561,1.438596491,0.109756098,0.000000162,CpGisland,TRUE,U11,Tr-P
27857,cg24434315,-0.00000687,0.00000294,-2.338483221,0.019997565,loss,ns,-0.00000388,0.00000499,-0.77848311,0.436878053,neg,ns,-0.001205988,0.001461659,-0.825081162,0.409959958,neg,ns,0.38725856,0.0000306,0.0000503,0.609693128,0.542511725,pos,ns,0.931577337,Ush2a,Ush2a_Intron,1,188656505,188656554,188656553,188656554,50,+,CACTGAGAAGTTTACTGATTTCTCCCAGTGGAATCTGCTGGAATTTATCG,"Intron (Ush2a-201/Ush2a, intron 36 of 70)",1,188263034,188965041,702008,1,Ush2a-201,393471,Ush2a-201;Ush2a-204,Ush2a;Ush2a,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,33,36,22283,ENSMUSG00000026609,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21958,cg05094019,-0.00000236,0.00000221,-1.067642463,0.286512528,loss,ns,-0.00000292,0.00000375,-0.778398828,0.436927648,neg,ns,0.000906936,0.001099661,0.824741457,0.410152538,pos,ns,0.387054597,-0.00000629,0.0000378,-0.166213719,0.868097117,neg,ns,0.947967691,Ntng1,Ntng1_threeUTR,3,109832608,109832657,109832608,109832609,50,-,CGATTGGAGTGGCCGAAGCATTCACAATCTTGCAAGGAAGAACAGAAATG,3' UTR,3,109780040,110143004,362965,2,Ntng1-211,310347,Ntng1-211;Ntng1-208;Ntng1-206;Ntng1-202;Ntng1-203;Ntng1-204;Ntng1-205;Ntng1-207;Ntng1-209;Ntng1-210;Ntng1-213;Ntng1-212,Ntng1;Ntng1;Ntng1;Ntng1;Ntng1;Ntng1;Ntng1;Ntng1;Ntng1;Ntng1;Ntng1;Ntng1,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,7,80883,ENSMUSG00000059857,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
630,cg03187186,-0.0000457,0.0000153,-2.98641903,0.003047725,loss,ns,0.0000202,0.000026,0.778332259,0.436966824,pos,ns,-0.006949384,0.007613454,-0.912776718,0.362069297,neg,ns,0.441208302,-0.000277587,0.000261826,-1.060194847,0.289881284,neg,ns,0.532380901,Gm9139,Gm9139_Intergenic_downstream,12,7325743,7325792,7325791,7325792,50,-,TAATTTACATGCAGACAAAAATATGATACAATATTGCCAATGCAGAATCG,Distal Intergenic,12,7417425,7418124,700,2,Gm9139-201,92381,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,668380,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1246,cg02812647,0.0000844,0.0000152,5.566109222,5.64E-08,gain,yes,0.00002,0.0000258,0.778277938,0.436998792,pos,ns,0.027112557,0.007544197,3.593829337,0.000378899,pos,ns,3.421476297,-0.001017078,0.000259444,-3.920218091,0.000108931,neg,ns,0.105692879,Bcor,Bcor_fiveUTR,X,12128349,12128398,12128349,12128350,50,+,CGAGTAACAATGGCAGCGATCAGCAGCTCTGCACGCGCTTCAGTGCATGA,Promoter (<=1kb),20,12059071,12128350,69280,2,Bcor-205,0,Bcor-201;Bcor-207;Bcor-205;Bcor-208,Bcor;Bcor;Bcor;Bcor,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,74,71458,ENSMUSG00000040363,conserved gene and region,X,12127661,12128843,1183,*,1183,110,0.662721894,0.850033967,0.092983939,1.48E-79,CpGisland,TRUE,U3,Pr-B
10298,cg04684673,-0.00000211,0.00000167,-1.259010599,0.208973722,loss,ns,-0.00000221,0.00000284,-0.778246218,0.43701746,neg,ns,0.000968398,0.000833422,1.161953018,0.246148361,pos,ns,0.608803053,-0.0000203,0.0000287,-0.70978297,0.47837227,neg,ns,0.952109021,Hibadh,Hibadh_Intron,6,52567670,52567719,52567670,52567671,50,+,CGTGCCATGTTTGATTTGTAAGTGATCACTGTTTCTGTTTCAGAGTCCAT,"Intron (Hibadh-201/Hibadh, intron 4 of 7)",6,52546228,52640389,94162,2,Hibadh-201,72670,Hibadh-201;Hibadh-203,Hibadh;Hibadh,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,13,58875,ENSMUSG00000029776,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6296,cg27286591,0.00000278,0.00000237,1.173785152,0.241382085,gain,ns,-0.00000313,0.00000402,-0.778028441,0.437145641,neg,ns,0.000447317,0.001178859,0.37944928,0.704614056,pos,ns,0.152048698,-0.00000602,0.0000405,-0.148392241,0.882129701,neg,ns,0.951405331,Tshz3,Tshz3_Intron,7,36739583,36739632,36739583,36739584,50,+,CGAACACCTAAATCAGCCAAGCGTCAGTGCTAAAATTGTGTATTATCATT,"Intron (Tshz3-201/Tshz3, intron 1 of 1)",7,36698118,36773553,75436,1,Tshz3-201,41465,Tshz3-201,Tshz3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,58,243931,ENSMUSG00000021217,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12878,cg25304608,0.000103468,0.00000688,15.03997799,9.05E-39,gain,yes,-0.00000909,0.0000117,-0.777901921,0.437220119,neg,ns,0.007323628,0.003424001,2.138909596,0.033224089,pos,ns,1.478546915,-0.000101458,0.000117751,-0.861633672,0.389555123,neg,ns,0.088701887,Cadm2,Cadm2_Promoter,16,67621032,67621081,67621032,67621033,50,-,CGCCGGGAAAAACAAACAGGCTTCTCAAGGACCCTTCGGGCAGGAAGAAC,Promoter (<=1kb),16,66655421,67620908,965488,2,Cadm2-201,-173,Cadm2-201;Cadm2-202;Cadm2-203;Cadm2-204,Cadm2;Cadm2;Cadm2;Cadm2,0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,9,239857,ENSMUSG00000064115,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
10565,cg19145654,-0.00000076,0.00000182,-0.417135439,0.676868065,loss,ns,0.00000241,0.00000309,0.777870624,0.437238544,pos,ns,-0.000138349,0.000906341,-0.152645965,0.878776779,neg,ns,0.056121427,0.0000416,0.0000312,1.335560624,0.182672682,pos,ns,0.047161798,Fnip1,Fnip1_fiveUTR,11,54438174,54438223,54438174,54438175,50,-,CGTTTGAAGTGACTAATTTCTGTCATATGACTGAGGCGCCCATGGGGGTG,Promoter (<=1kb),11,54438199,54518235,80037,1,Fnip1-201,0,Fnip1-201,Fnip1,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,7,216742,ENSMUSG00000035992,conserved gene and region,11,54437949,54438290,342,*,342,41,0.722222222,0.932189868,0.119883041,5.68E-35,CpGisland,TRUE,U2,Pr-W
25193,cg19336073,-0.0000141,0.00000653,-2.157343714,0.031747039,loss,ns,-0.00000863,0.0000111,-0.777787137,0.437287695,neg,ns,0.011170407,0.00325077,3.436234448,0.000670328,pos,ns,3.173712609,-0.000497917,0.000111794,-4.453890169,0.0000118,neg,ns,0.822337153,Arid1a,Arid1a_threeUTR,4,133679041,133679090,133679041,133679042,50,+,CGTGGAACATATAGTATAAAGATTTCATACTGAATAAATGATATTCATTA,3' UTR,4,133679008,133753611,74604,2,Arid1a-202,74521,Arid1a-202;Arid1a-205;Arid1a-201,Arid1a;Arid1a;Arid1a,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,31,93760,ENSMUSG00000007880,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22422,cg20786058,0.000000097,0.00000128,0.075559828,0.939818036,gain,ns,0.0000017,0.00000218,0.7777374,0.437316979,pos,ns,-0.0000361,0.000639102,-0.056485567,0.954991382,neg,ns,0.020000548,0.00000145,0.000022,0.065815872,0.947566844,pos,ns,0.040815731,Fst,Fst_Promoter,13,114460294,114460343,114460342,114460343,50,-,ATACAGCCGTGCTAATATTAGAAGACAGTTGTTTGGGTGCCTCTCAGACG,Promoter (1-2kb),13,114452290,114458951,6662,2,Fst-202,-1392,Fst-202;Fst-201;Fst-206;Fst-205,Fst;Fst;Fst;Fst,0;0;-4058;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,4,7,14313,ENSMUSG00000021765,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
8559,cg16913798,0.0000225,0.0000204,1.104355736,0.270295298,gain,ns,-0.000027,0.0000347,-0.777726516,0.437323387,neg,ns,0.009760727,0.010157081,0.960977521,0.337312411,pos,ns,0.47196768,-0.000180944,0.000349301,-0.518016198,0.604816462,neg,ns,0.265778261,Btrc,Btrc_Exon,19,45330097,45330146,45330145,45330146,50,-,AGGAATGAAATGTTCATAAAGAATTGCTGCATCTCGTCACCTTAACTGCG,"Exon (Gm28578-209/Gm28578-209, exon 6 of 7)",19,45363734,45507736,144003,1,Btrc-204,-33637,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,30,98,12234,ENSMUSG00000025217,conserved gene and region,19,45329908,45330151,244,*,244,14,0.471311475,1.056277056,0.057377049,8.59E-08,CpGisland,TRUE,NA,NRS
13375,cg05168253,-0.000111041,0.000015,-7.413525557,1.18E-12,loss,yes,0.0000198,0.0000254,0.777713836,0.437330853,pos,ns,-0.023058281,0.007454755,-3.093097169,0.002161068,neg,ns,2.665331529,0.000438896,0.000256368,1.711975763,0.087901225,pos,ns,0.771404975,Nr2f2,Nr2f2_Intergenic_downstream,7,70349873,70349922,70349873,70349874,50,+,CGCACTGCAGGGAGCCTTTGAAATCTGAGAAAATGGGAAAAATCATCTGA,Downstream (2-3kb),7,70353074,70355237,2164,2,Nr2f2-203,5315,Nr2f2-201;Nr2f2-203;Nr2f2-202,Nr2f2;Nr2f2;Nr2f2,0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,19,69,11819,ENSMUSG00000030551,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23167,cg11041122,0.0000339,0.0000148,2.289770296,0.022706286,gain,ns,0.0000196,0.0000252,0.777713219,0.437331216,pos,ns,0.00937299,0.007377954,1.270404975,0.204893035,pos,ns,0.688472804,-0.000516591,0.000253727,-2.036010416,0.042599164,neg,ns,0.654729475,Rnf220,Rnf220_Intron,4,117379920,117379969,117379968,117379969,50,-,ACAAGAGCATAATAAAGCCCTTGTAATATACTAGAACTTGTGTGGTCCCG,"Intron (Rnf220-201/Rnf220, intron 2 of 14)",4,117271463,117497052,225590,2,Rnf220-201,117083,Rnf220-201;Rnf220-202;Rnf220-207,Rnf220;Rnf220;Rnf220,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26448,cg03051836,0.0000861,0.00000966,8.908168545,4.50E-17,gain,yes,-0.0000128,0.0000164,-0.777616268,0.437388302,neg,ns,0.012788905,0.004807784,2.660041462,0.008219468,pos,ns,2.085156281,-0.0002839,0.000165339,-1.717077555,0.086963782,neg,ns,0.09948787,Foxa2,Foxa2_Exon,2,148044351,148044400,148044351,148044352,50,-,CGTCAGCATCTTGTTGGGGCTCTGCTGGATGGCCATGGTGATGAGCGAGA,"Exon (Foxa2-202/Foxa2, exon 2 of 2)",2,148042877,148045948,3072,2,Foxa2-202,1548,Foxa2-202;Foxa2-201;Foxa2-204;Foxa2-203,Foxa2;Foxa2;Foxa2;Foxa2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,25,15376,ENSMUSG00000037025,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
4586,cg21544988,-0.000145732,0.0000172,-8.483976478,9.07E-16,loss,yes,0.0000227,0.0000292,0.777606926,0.437393802,pos,ns,0.010048642,0.008549335,1.175371107,0.240748219,pos,ns,0.618436917,-0.001054185,0.000294011,-3.58552835,0.000390658,neg,ns,0.489462695,Gm37281,Gm37281_Intron,3,29880196,29880245,29880244,29880245,50,+,GTTCAGAATTAATTTCCTAACCATGAATCACCTGCAGACAATGAATCACG,"Intron (Gm33206-201/Gm33206-201, intron 1 of 3)",3,29926536,29926974,439,1,Gm37281-201,-46291,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4018,cg16909978,0.0000457,0.0000102,4.487093183,0.0000102,gain,ns,-0.0000135,0.0000173,-0.777498377,0.437457722,neg,ns,0.021031127,0.005072829,4.145837609,0.0000437,pos,ns,4.359068891,-0.000625015,0.000174454,-3.582686302,0.000394762,neg,ns,0.295504839,Gm50479,Gm50479_Intron,8,26472173,26472222,26472221,26472222,50,+,ACTCCTTAATTTGACACATTGCAATGATCTCCATTCAGCCTTTCTGCTCG,"Intron (Gm31983-201/Gm31983-201, intron 2 of 2)",8,26237222,26237407,186,1,Gm50479-201,234951,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,21,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23265,cg11277400,0.00000111,0.00000471,0.235273693,0.814151653,gain,ns,-0.00000622,0.000008,-0.777443026,0.437490318,neg,ns,-0.003173224,0.002343562,-1.354017593,0.176716999,neg,ns,0.752721671,0.000189972,0.0000806,2.357123633,0.019038588,pos,ns,0.959113513,Eri3,Eri3_Exon,4,117637345,117637394,117637393,117637394,50,-,GTGAGCTTGATAAATGGGGAGCACTCCAGACTGACTCGCGCCTTCCTCCG,"Exon (Eri3-203/Eri3, exon 1 of 3)",4,117550365,117674297,123933,1,Eri3-201,86980,Eri3-201;Eri3-206;Eri3-203,Eri3;Eri3;Eri3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,97,140546,ENSMUSG00000033423,conserved gene but different region,4,117637294,117637471,178,*,178,15,0.634831461,0.841740227,0.084269663,1.21E-10,CpGisland,TRUE,U11,Tr-P
19480,cg19853140,0.00000146,0.00000521,0.279951158,0.779701686,gain,ns,-0.00000687,0.00000884,-0.777411501,0.437508883,neg,ns,-0.005382151,0.002590696,-2.077492588,0.038579071,neg,ns,1.413648236,0.000130443,0.0000891,1.464112593,0.144176485,pos,ns,0.901989502,Pja1,Pja1_Intergenic_downstream,X,99396355,99396404,99396355,99396356,50,+,CGCAAACACATTTGCTAATGCAGCTAGCTGGCCTGCCCTGGGACAGCTGG,Distal Intergenic,20,99466146,99470672,4527,2,Pja1-204,74268,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,17,18744,ENSMUSG00000034403,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23564,cg15661483,-0.0000126,0.00000675,-1.862811271,0.06343452,loss,ns,-0.00000891,0.0000115,-0.777382281,0.437526092,neg,ns,-0.002561082,0.003359483,-0.762344141,0.446434284,neg,ns,0.350242461,0.000141701,0.000115532,1.226506685,0.220938832,pos,ns,0.923969399,Ctdspl,Ctdspl_Exon,9,119026968,119027017,119026968,119026969,50,+,CGGTGCTTGACTATGGAAAGAAATGTGTGGTCATTGATTTAGATGAAACA,"Exon (Ctdspl-201/Ctdspl, exon 4 of 8)",9,118926453,119043998,117546,1,Ctdspl-201,100515,Ctdspl-201;Ctdspl-202;Ctdspl-204,Ctdspl;Ctdspl;Ctdspl,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,7,69274,ENSMUSG00000047409,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26610,cg09316860,0.000000729,0.000000753,0.968568992,0.333515332,gain,ns,-0.000000994,0.00000128,-0.777357728,0.437540552,neg,ns,0.000462747,0.000374702,1.234973287,0.217775645,pos,ns,0.66199069,-0.0000305,0.0000129,-2.365663025,0.01861293,neg,ns,0.975637726,Pex14,Pex14_Exon,4,148984620,148984669,148984620,148984621,50,-,CGGGAATAATTTGCTTTATTTTATGACAAATGCAGAAATAAAAAGAAAAA,"Exon (Gm17029-202/Gm17029-202, exon 3 of 3)",4,148960535,149099876,139342,2,Pex14-201,115207,Pex14-201;Pex14-202;Pex14-205;Pex14-203,Pex14;Pex14;Pex14;Pex14,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,48,56273,ENSMUSG00000028975,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14944,cg05553502,-0.00000684,0.00000708,-0.965948863,0.334822717,loss,ns,0.00000935,0.000012,0.777248307,0.437604998,pos,ns,0.007348442,0.003524117,2.085186761,0.037870183,pos,ns,1.421702595,-0.0000575,0.000121194,-0.47468765,0.635343845,neg,ns,0.332246119,Nr2f1,Nr2f1_Exon,13,78195220,78195269,78195220,78195221,50,-,CGCCTTGAGCTTCTCCACCTGCTCCTGGAAGATGCGGATGTGGTCCATGA,"Exon (Nr2f1-201/Nr2f1, exon 2 of 3)",13,78188973,78199757,10785,2,Nr2f1-201,4488,Nr2f1-201;Nr2f1-205;Nr2f1-203;Nr2f1-202;Nr2f1-204;Nr2f1-206,Nr2f1;Nr2f1;Nr2f1;Nr2f1;Nr2f1;Nr2f1,0;0;0;0;-4777;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,25,55,13865,ENSMUSG00000069171,conserved gene and region,13,78194760,78195505,746,*,746,69,0.662198391,0.847266802,0.092493298,5.24E-50,CpGisland,TRUE,U13,Hc-P
10132,cg18091117,0.0000986,0.0000154,6.391591459,6.02E-10,gain,yes,-0.0000204,0.0000262,-0.777116705,0.437682515,neg,ns,0.02099873,0.007676105,2.735597174,0.006585425,pos,ns,2.181416188,-0.000349576,0.000263981,-1.324249384,0.18639575,neg,ns,0.452084945,Gm28308,Gm28308_Intron,6,52200965,52201014,52200965,52200966,50,+,CGTTAGTGAGATTATATGTTATGTGGTATATAATGTTGGATGTCAACTCC,"Intron (Hoxaas3-202/Hoxaas3-202, intron 1 of 2)",6,52163359,52213339,49981,2,Gm28308-201,12325,Gm28308-201;Hoxa3-201;Hoxa3-203;Hoxa5-201,Gm28308;Hoxa3;Hoxa3;Hoxa5,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,46,103,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
15130,cg00563016,-0.00000759,0.00000182,-4.175482306,0.0000387,loss,ns,0.0000024,0.00000309,0.777116204,0.43768281,pos,ns,-0.000498817,0.000905153,-0.551085383,0.581972098,neg,ns,0.235097837,0.00004,0.0000311,1.285673651,0.199516543,pos,ns,0.053928751,Nf1,Nf1_Exon,11,79339647,79339696,79339695,79339696,50,-,CTCTCCCCGGGCCGTGGAAAGGATCCCACTTCCGGTGGGGTGTCATGGCG,Promoter (<=1kb),11,79339693,79345186,5494,1,Nf1-207,0,Nf1-207;Nf1-209;Nf1-202;Nf1-201;Nf1-205,Nf1;Nf1;Nf1;Nf1;Nf1,0;-96;0;0;-191,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,6,18015,ENSMUSG00000020716,conserved gene but different region,11,79339333,79340346,1014,*,1014,100,0.727810651,0.745149912,0.098619329,3.92E-75,CpGisland,TRUE,NA,NRS
9579,cg16804284,0.000144793,0.000012,12.04671127,1.13E-27,gain,yes,-0.0000159,0.0000204,-0.77695175,0.437779689,neg,ns,0.017575003,0.005982117,2.937923915,0.003551992,pos,ns,2.449528068,-0.000319133,0.000205724,-1.551263951,0.121858718,neg,ns,0.105687856,Foxg1,Foxg1_Exon,12,49385456,49385505,49385456,49385457,50,-,CGGCCTACCCCAGCCACCCCATGCCCTACAGCTCCGTGTTGACTCAGAAC,"Exon (Foxg1-204/Foxg1, exon 1 of 1)",12,49382883,49386855,3973,1,Foxg1-204,2573,Foxg1-202;Foxg1-203;Foxg1-204;Foxg1-201;Gm43517-201,Foxg1;Foxg1;Foxg1;Foxg1;Gm43517,0;2656;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,27,15228,ENSMUSG00000020950,conserved gene and region,12,49385116,49385808,693,*,693,72,0.670995671,0.980968858,0.103896104,4.68E-56,CpGisland,TRUE,U13,Hc-P
3443,cg26495931,0.00000303,0.0000101,0.299438708,0.764805991,gain,ns,-0.0000134,0.0000172,-0.776894418,0.437813466,neg,ns,0.018244207,0.005043585,3.617309228,0.000347413,pos,ns,3.459154016,-0.000490791,0.000173448,-2.829606984,0.004964538,neg,ns,0.572046765,Bcl11a,Bcl11a_Exon,11,24085595,24085644,24085595,24085596,50,+,CGATTGTTTATCAACGTCATCTAGAGGAATTTGCCCCAAACAGGAACACA,"Exon (Bcl11a-201/Bcl11a, exon 2 of 5)",11,24078056,24173194,95139,1,Bcl11a-201,7539,Bcl11a-201;Bcl11a-203;Bcl11a-205;Bcl11a-202;Bcl11a-204,Bcl11a;Bcl11a;Bcl11a;Bcl11a;Bcl11a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,51,98,14025,ENSMUSG00000000861,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
13687,cg04461706,0.0000429,0.000015,2.859192951,0.00453513,gain,ns,0.0000198,0.0000255,0.776705888,0.437924549,pos,ns,0.034261512,0.007460962,4.592103734,0.00000639,pos,ns,5.19467327,-0.001199457,0.000256582,-4.674752115,0.0000044,neg,ns,0.765240946,Tle1,Tle1_Intergenic_downstream,4,72069479,72069528,72069527,72069528,50,+,TATAGCTTTGTAGTGTTATTGGGCCCCATGCTAACAGCAAATCATTCACG,Distal Intergenic,4,72118220,72120734,2515,2,Tle1-206,51206,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,20,21885,ENSMUSG00000008305,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3758,cg20170876,-0.00000436,0.00000381,-1.142866575,0.253975853,loss,ns,-0.00000503,0.00000648,-0.776551666,0.438015429,neg,ns,0.002475147,0.001897333,1.304540214,0.193017109,pos,ns,0.714404194,-0.000110264,0.0000652,-1.689889446,0.092054416,neg,ns,0.97195142,5730522E02Rik,5730522E02Rik_Intron,11,25287645,25287694,25287645,25287646,50,-,CGTAATGAGCTTCACAAGATGCTTGTCGCAATAACTCCGTACTTCCCTAA,"Intron (4933427E13Rik-204/4933427E13Rik-204, intron 1 of 1)",11,25602816,25620098,17283,2,5730522E02Rik-205,332453,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,90,70626,NA,mapped to different genes,11,25287599,25287683,85,*,85,8,0.505882353,1.574074074,0.094117647,0.00000348,CpGisland,TRUE,U15,NS
5093,cg11422297,0.0000547,0.0000103,5.293688774,0.000000227,gain,yes,-0.0000136,0.0000176,-0.776546923,0.438018223,neg,ns,0.021947059,0.005142559,4.267731197,0.0000263,pos,ns,4.580514868,-0.000848278,0.000176852,-4.796537097,0.00000251,neg,ns,0.114119518,Bach2,Bach2_Intron,4,32303795,32303844,32303843,32303844,50,-,TGTGTTATCTAAGGAACTGCTGAGCCCATTCATCTGCTTTTCACGGCCCG,"Intron (Bach2-202/Bach2, intron 1 of 6)",4,32238804,32586104,347301,1,Bach2-202,64991,Bach2-202;Bach2-201;Bach2-205;Bach2-206,Bach2;Bach2;Bach2;Bach2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,14,12014,ENSMUSG00000040270,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1253,cg26748472,0.000031,0.00000409,7.576474303,4.13E-13,gain,yes,-0.00000539,0.00000695,-0.776523747,0.438031882,neg,ns,0.003190179,0.002034826,1.567789223,0.117950484,pos,ns,0.928300274,-0.0000618,0.00007,-0.883470291,0.377666847,neg,ns,0.067616623,Bcor,Bcor_Intron,X,12136064,12136113,12136112,12136113,50,+,CCCCCTTTGTTCTCCTCCCCTTTCCCTCTCTTTAAATAGATTTCAGGGCG,"Intron (Bcor-201/Bcor, intron 1 of 13)",20,12036743,12160355,123613,2,Bcor-201,24242,Bcor-201;Bcor-208,Bcor;Bcor,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,56,74,71458,ENSMUSG00000040363,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15586,cg11104864,-0.0000188,0.0000217,-0.864960584,0.38772926,loss,ns,0.0000287,0.0000369,0.776244111,0.438196697,pos,ns,0.002877256,0.010813508,0.266079811,0.790354623,pos,ns,0.102178002,-0.0000661,0.000371876,-0.177614519,0.859141721,neg,ns,0.499322747,Cetn3,Cetn3_Intergenic_downstream,13,81946036,81946085,81946036,81946037,50,-,CGATTGATGGCTCCTTCTGGCCCTGGCAACTCTTTTTGGTAGCTGGTGCT,Distal Intergenic,13,81791977,81793668,1692,1,Cetn3-204,154108,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,9,12626,ENSMUSG00000021537,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17769,cg10469321,0.000088,0.0000193,4.559183286,0.0000074,gain,ns,-0.0000254,0.0000328,-0.776069235,0.438299786,neg,ns,0.061509222,0.009606128,6.403123459,5.63E-10,pos,ns,9.249323953,-0.000912147,0.000330354,-2.761119758,0.006103689,neg,ns,0.632628403,Son,Son_Intron,16,91662404,91662453,91662404,91662405,50,+,CGGCAGAAGCTCTGTTTAGCAGGCCATTATCCGGGATGGCTAAGCTCCGC,"Intron (Son-203/Son, intron 4 of 11)",16,91647506,91679207,31702,1,Son-203,14898,Son-203;Son-204;Son-202;Son-208;Son-201;Son-205;Son-212;Son-207,Son;Son;Son;Son;Son;Son;Son;Son,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,31,20658,ENSMUSG00000022961,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5028,cg14747322,-0.00000346,0.0000012,-2.893925985,0.004074321,loss,ns,0.00000158,0.00000203,0.775979296,0.43835281,pos,ns,0.000402843,0.000594823,0.677248219,0.498753563,pos,ns,0.302113989,-0.00000278,0.0000205,-0.135858093,0.892021644,neg,ns,0.0413829,Cpeb4,Cpeb4_Promoter,11,31871278,31871327,31871278,31871279,50,-,CGGAGAATCGAACTGAGGGAACTGAACAAACCGCCCCTGGGTCCCATGAG,Promoter (<=1kb),11,31872211,31931577,59367,1,Cpeb4-201,-933,Cpeb4-201;Cpeb4-202;Cpeb4-203,Cpeb4;Cpeb4;Cpeb4,0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,10,67579,ENSMUSG00000020300,conserved gene but different region,11,31871188,31871561,374,*,374,23,0.620320856,0.644055106,0.061497326,4.69E-13,CpGisland,TRUE,U1,Pr-A
21811,cg19491991,0.0000908,0.0000173,5.257229637,0.000000273,gain,yes,-0.0000228,0.0000293,-0.775897949,0.438400772,neg,ns,0.000275425,0.008591802,0.032056675,0.974447484,pos,ns,0.011241562,0.0000912,0.000295471,0.308577468,0.757850224,pos,ns,0.429362319,Lmo1,Lmo1_Intergenic_upstream,7,109191537,109191586,109191537,109191538,50,-,CGTGCACATTGCGGAAACACAAGGGAACCAATTAGTTTAATTATCAAAAC,Distal Intergenic,7,109138675,109175207,36533,2,Lmo1-202,-16379,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,34,66,109594,ENSMUSG00000036111,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5150,cg26157072,0.0001341,0.0000171,7.862077391,6.31E-14,gain,yes,-0.0000225,0.000029,-0.775881155,0.438410674,neg,ns,0.028645273,0.008489208,3.374316222,0.000834032,pos,ns,3.07881748,-0.000704194,0.000291943,-2.412093257,0.016441859,neg,ns,0.298887379,Fli1,Fli1_Promoter,9,32545208,32545257,32545208,32545209,50,+,CGCTCGAGGCCATAATTAATTTGAGATTTATTTTTATTGGAGAACTCGAG,Promoter (2-3kb),9,32428059,32542861,114803,2,Fli1-202,-2347,Fli1-201;Fli1-202,Fli1;Fli1,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,5,15,14247,ENSMUSG00000016087,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8654,cg15015161,-0.00000692,0.00000166,-4.16160467,0.000041,loss,ns,-0.00000219,0.00000282,-0.775846443,0.438431142,neg,ns,-0.000375424,0.000827384,-0.453747395,0.650328135,neg,ns,0.186867457,0.0000335,0.0000285,1.177148612,0.240039197,pos,ns,0.952434877,Btrc,Btrc_Intron,19,45493862,45493911,45493862,45493863,50,+,CGTAGAAAGTTAACTGCCTGGAGTCTTTTAAATATAAGTAACACGCAACC,"Intron (Btrc-204/Btrc, intron 1 of 2)",19,45363734,45507736,144003,1,Btrc-204,130128,Btrc-204;Btrc-201;Btrc-210;Btrc-202;Btrc-203;Btrc-209,Btrc;Btrc;Btrc;Btrc;Btrc;Btrc,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,63,98,12234,ENSMUSG00000025217,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24909,cg09767877,-0.00000422,0.00000131,-3.232911784,0.001357344,loss,ns,-0.00000172,0.00000222,-0.775772644,0.438474658,neg,ns,0.000180879,0.000649793,0.278364288,0.780918311,pos,ns,0.107394394,-0.0000276,0.0000223,-1.235576926,0.217551378,neg,ns,0.045156989,Sfswap,Sfswap_Exon,5,129501551,129501600,129501599,129501600,50,-,AGCACCTCATCCCCTGGATGGGGGACCACAAGATCCTCATCGACAGGTCG,Promoter (<=1kb),5,129501221,129571384,70164,1,Sfswap-201,330,Sfswap-201;Sfswap-204;Sfswap-212;Sfswap-213;Sfswap-214;Sfswap-208;Sfswap-203;Sfswap-215,Sfswap;Sfswap;Sfswap;Sfswap;Sfswap;Sfswap;Sfswap;Sfswap,0;0;0;0;0;0;0;-2741,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,5,231769,ENSMUSG00000029439,conserved gene and region,5,129501591,129502227,637,*,637,65,0.681318681,0.879367102,0.102040816,4.10E-50,CpGisland,TRUE,U1,Pr-A
13966,cg22677944,-0.0000801,0.0000201,-3.976776767,0.000087,loss,ns,0.0000265,0.0000342,0.775678244,0.438530325,pos,ns,0.012399341,0.010027322,1.236555625,0.217188119,pos,ns,0.663163936,-0.000427794,0.000344839,-1.240561605,0.215705811,neg,ns,0.47308581,Mroh5,Mroh5_Intergenic_upstream,15,73870366,73870415,73870414,73870415,50,+,AATTGGTACATTTTGTAAGCAATCATCCCCTGGCACCCTCTGCCGCAGCG,Distal Intergenic,15,73796736,73839699,42964,2,Mroh5-203,-30667,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,268816,ENSMUSG00000072487,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19679,cg23814154,-0.000000257,0.0000039,-0.065878658,0.947516897,loss,ns,-0.00000514,0.00000663,-0.775441589,0.438669897,neg,ns,-0.002150735,0.001943163,-1.106821718,0.269229138,neg,ns,0.569877939,-0.0000235,0.0000668,-0.351708258,0.725296011,neg,ns,0.471991407,Pou6f1,Pou6f1_Promoter,15,100599645,100599694,100599693,100599694,50,+,TAAATATATAAATTATGCTAATTACGGGCATTGCATATTAACCAAACCCG,Promoter (<=1kb),15,100575318,100599984,24667,2,Pou6f1-202,290,Pou6f1-202;Pou6f1-201;Pou6f1-205;Pou6f1-206;Pou6f1-207;Pou6f1-209,Pou6f1;Pou6f1;Pou6f1;Pou6f1;Pou6f1;Pou6f1,0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,3,4,19009,ENSMUSG00000009739,conserved gene and region,15,100599669,100600040,372,*,372,44,0.77688172,0.8,0.11827957,3.29E-37,CpGisland,TRUE,NA,NRS
9653,cg10331358,-0.00000285,0.00000103,-2.770146772,0.005941093,loss,ns,-0.00000135,0.00000175,-0.77537512,0.438709103,neg,ns,-0.000565519,0.000511831,-1.104894263,0.27006222,neg,ns,0.568536167,0.00000389,0.0000176,0.221226893,0.825061417,pos,ns,0.972176135,Htatip2,Htatip2_Intergenic_upstream,7,49699291,49699340,49699339,49699340,50,+,ACTGTTGCCGGGTCATTATGCCTTAATTTTTTTGCATAGTTATTCAGCCG,Distal Intergenic,7,49759115,49762759,3645,1,Htatip2-203,-59775,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,7,53415,ENSMUSG00000039745,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20269,cg05473517,0.000000874,0.000000481,1.815580815,0.07040075,gain,ns,0.000000634,0.000000818,0.775319929,0.438741658,pos,ns,-0.0000456,0.00023957,-0.190448889,0.849082047,neg,ns,0.071050342,0.000000434,0.00000824,0.052693405,0.958010133,pos,ns,0.00898074,Hoxc5,Hoxc5_Exon,15,102981657,102981706,102981657,102981658,50,-,CGGCGACGGGGCCCATCAGTAACTATTACGTGGACTCGCTCATCTCTCAC,"Exon (Hoxc9-202/Hoxc9, exon 2 of 2)",15,102967443,103015676,48234,1,Hoxc5-202,14214,Hoxc5-202;Hoxc9-202;Hoxc9-201,Hoxc5;Hoxc9;Hoxc9,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,72,134,15424,ENSMUSG00000022485,conserved gene and region,15,102981651,102982178,528,*,528,70,0.696969697,1.109010712,0.132575758,6.92E-63,CpGisland,TRUE,U3,Pr-B
14471,cg12604153,0.000000955,0.00000427,0.2236207,0.823199748,gain,ns,0.00000562,0.00000725,0.775114848,0.438862641,pos,ns,0.002678712,0.002124907,1.260625486,0.208391808,pos,ns,0.681119357,-0.0000198,0.0000731,-0.270624474,0.786859961,neg,ns,0.884041679,Zc3h3,Zc3h3_Intron,15,75819592,75819641,75819592,75819593,50,+,CGTGCTCTCTGTTGTTCCACACTACCTGGTGTTTAATGACAACACTGTCA,"Intron (Zc3h3-201/Zc3h3, intron 3 of 11)",15,75754430,75841915,87486,2,Zc3h3-201,22274,Zc3h3-201;Zc3h3-203,Zc3h3;Zc3h3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,18,223642,ENSMUSG00000075600,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1414,cg27702216,0.0000322,0.0000115,2.799665797,0.005436407,gain,ns,0.0000152,0.0000195,0.775112067,0.438864282,pos,ns,0.003867172,0.005726462,0.675316145,0.499978328,pos,ns,0.30104882,0.000100024,0.000196933,0.507907947,0.611879092,pos,ns,0.504447133,Rpl36-ps3,Rpl36-ps3_Intergenic_upstream,12,12725223,12725272,12725223,12725224,50,-,CGTCCATTCAGATCCATCACCCTGAGATAAACTGTGAATATTGCCCTTTG,Distal Intergenic,12,12912022,12912336,315,1,Rpl36-ps3-201,-186799,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,19,20,100043215,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23012,cg22566719,0.000085,0.0000139,6.117264359,2.87E-09,gain,yes,-0.0000183,0.0000236,-0.775012218,0.438923193,neg,ns,0.021487697,0.006914182,3.107771582,0.002059703,pos,ns,2.6861955,-0.00054113,0.000237778,-2.275775362,0.023541496,neg,ns,0.381573759,Jmjd6,Jmjd6_threeUTR,11,116839834,116839883,116839882,116839883,50,-,TTACCCCGAGAGCTGGTCCCTCCAGGTCAGGGTTGGGACACAGTGGCACG,3' UTR,11,116837432,116843281,5850,2,Jmjd6-206,3398,Jmjd6-206;Jmjd6-201;Jmjd6-203;Jmjd6-207;Jmjd6-202;Jmjd6-204;Jmjd6-205;Mettl23-201;Mettl23-206;Mettl23-202;Mettl23-207;Mettl23-208;Mettl23-203;Mettl23-204,Jmjd6;Jmjd6;Jmjd6;Jmjd6;Jmjd6;Jmjd6;Jmjd6;Mettl23;Mettl23;Mettl23;Mettl23;Mettl23;Mettl23;Mettl23,0;0;0;0;0;0;0;-3395;0;-3678;-3702;-3790;-3792;-3792,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,2,107817,ENSMUSG00000056962,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
9543,cg07806898,0.0000915,0.0000172,5.325514547,0.000000194,gain,yes,-0.0000226,0.0000292,-0.77498089,0.438941677,neg,ns,0.025983401,0.00855593,3.036888121,0.002593331,pos,ns,2.586142042,-0.000620216,0.000294238,-2.107874077,0.035844403,neg,ns,0.424190081,Tra2a,Tra2a_threeUTR,6,49252472,49252521,49252472,49252473,50,+,CGAGCAGGAGTTCCCGTTGGAGATTTTGACTGAGAGCGAGACTCCTAACA,3' UTR,6,49243924,49264010,20087,2,Tra2a-204,11489,Tra2a-204;Tra2a-202;Tra2a-201;Tra2a-205,Tra2a;Tra2a;Tra2a;Tra2a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,5,7,101214,ENSMUSG00000029817,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
105,cg14347559,0.00000281,0.00000523,0.537290718,0.591452261,gain,ns,-0.00000689,0.00000889,-0.774963275,0.43895207,neg,ns,-0.000595244,0.002603754,-0.228610058,0.819322739,neg,ns,0.086544992,-0.0000951,0.0000895,-1.061791605,0.28915678,neg,ns,0.854640287,Adcy3,Adcy3_Exon,12,4194358,4194407,4194358,4194359,50,-,CGAGATGCTGAAAGACATGAAGAAAGACGAGAGCCAGAAGGACCAGCAGC,"Exon (Adcy3-208/Adcy3, exon 4 of 21)",12,4133103,4213525,80423,1,Adcy3-208,61255,Adcy3-208;Adcy3-202;Adcy3-207;Adcy3-204;Adcy3-201;Adcy3-206;Cenpo-206;Cenpo-202,Adcy3;Adcy3;Adcy3;Adcy3;Adcy3;Adcy3;Cenpo;Cenpo,0;0;0;0;0;-414;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,104111,ENSMUSG00000020654,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4659,cg15747130,-0.000000285,0.00000139,-0.204795931,0.837865965,loss,ns,0.00000183,0.00000236,0.774958451,0.438954917,pos,ns,0.002373518,0.000692137,3.429261873,0.000687136,pos,ns,3.16295731,-0.0000719,0.0000238,-3.020969013,0.002729452,neg,ns,0.045197439,Hes1,Hes1_Exon,16,30066321,30066370,30066321,30066322,50,+,CGCCCGTGGTTGTGAGAGGCATTCAGCTACATTTTACTGCCTTGGCTCAC,Promoter (<=1kb),16,30066338,30067319,982,1,Hes1-204,0,Hes1-202;Hes1-201;Hes1-203;Hes1-204,Hes1;Hes1;Hes1;Hes1,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,20,15205,ENSMUSG00000022528,conserved gene and region,16,30066223,30066328,106,*,106,15,0.698113208,1.169117647,0.141509434,3.45E-14,CpGisland,TRUE,U1,Pr-A
23080,cg26122142,0.0000847,0.0000146,5.805163056,1.59E-08,gain,yes,-0.0000192,0.0000248,-0.774945163,0.438962758,neg,ns,0.045334885,0.007264747,6.240394357,1.43E-09,pos,ns,8.84417095,-0.001001551,0.000249834,-4.00886526,0.0000765,neg,ns,0.562986639,Rnf220,Rnf220_Intron,4,117281301,117281350,117281349,117281350,50,+,GCTGAACAGTTGACAATGCAATTATCCAGTGTGGAGGCAGGGAGTTGGCG,"Intron (Rnf220-201/Rnf220, intron 8 of 14)",4,117271463,117497052,225590,2,Rnf220-201,215702,Rnf220-201;Rnf220-203;Rnf220-212;Rnf220-202;Rnf220-205;Rnf220-209;Rnf220-213;Rnf220-210;Rnf220-206;Rnf220-208,Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27123,cg02123319,-0.0000184,0.00000509,-3.609975903,0.000356973,loss,ns,0.0000067,0.00000865,0.77491952,0.438977888,pos,ns,-0.004829657,0.002533626,-1.906223504,0.057545806,neg,ns,1.239986323,-0.0000831,0.0000871,-0.953687481,0.340984895,neg,ns,0.926718704,Astn1,Astn1_threeUTR,1,158684187,158684236,158684235,158684236,50,-,CTCTACCACTATAACCAGCACTATGAGAGTTTTGGGGAATTCACCTGGCG,3' UTR,1,158362273,158691779,329507,1,Astn1-205,321914,Astn1-205;Astn1-201;Astn1-211;Astn1-204;Astn1-210,Astn1;Astn1;Astn1;Astn1;Astn1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,3,11899,ENSMUSG00000026587,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27421,cg12695803,-0.0000052,0.00000169,-3.077052355,0.002277146,loss,ns,0.00000223,0.00000287,0.774890279,0.438995142,pos,ns,0.00351958,0.00084181,4.180964981,0.0000378,pos,ns,4.422356977,-0.0000706,0.0000289,-2.440411503,0.015230298,neg,ns,0.964724805,Rnf114,Rnf114_Exon,2,167507060,167507109,167507108,167507109,50,-,TGCCTGCAGGAATGTCTGAAGCCGAAGAAGCCTGTCTGTGGGGTGTGTCG,"Exon (Rnf114-202/Rnf114, exon 4 of 8)",2,167492645,167516166,23522,1,Rnf114-202,14415,Rnf114-202;Rnf114-201;Rnf114-203,Rnf114;Rnf114;Rnf114,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,81018,ENSMUSG00000006418,conserved gene but different region,2,167507082,167507190,109,*,109,9,0.623853211,0.867374005,0.082568807,0.0000019,CpGisland,TRUE,U12,Tr-I
8967,cg02436795,-0.000000364,0.000000655,-0.556263706,0.578431886,loss,ns,0.000000862,0.00000111,0.774771274,0.439065368,pos,ns,-0.00055041,0.000325884,-1.688975436,0.092229646,neg,ns,1.035129459,0.0000145,0.0000112,1.295260755,0.196194033,pos,ns,0.985540209,Kcnc1,Kcnc1_threeUTR,7,46437432,46437481,46437480,46437481,50,-,AGGTTTGCCGGACGAGTCCGAGTGGCCCAGGCATTGTACTAGGACGGACG,3' UTR,7,46397648,46438704,41057,1,Kcnc1-203,39784,Kcnc1-201;Kcnc1-203,Kcnc1;Kcnc1,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,14,16502,ENSMUSG00000058975,conserved gene and region,7,46437407,46437524,118,*,118,10,0.542372881,1.162561576,0.084745763,0.000000309,CpGisland,TRUE,U15,NS
18557,cg23643259,0.0000516,0.00000396,13.0379235,2.81E-31,gain,yes,-0.00000521,0.00000672,-0.774697017,0.439109191,neg,ns,0.003426085,0.001969414,1.739646913,0.082913547,pos,ns,1.081374503,0.000088,0.0000677,1.299777907,0.194642761,pos,ns,0.052476277,Hoxb7,Hoxb7_Exon,11,96286735,96286784,96286783,96286784,50,-,CATTGTATTATGCGAATACTTTATTTTCTAAATATCCAGCCTCAAGTTCG,Promoter (<=1kb),11,96286623,96290162,3540,1,Hoxb7-201,112,Hoxb7-201;Hoxb7-202;Hoxb8-201;Hoxb8-202;Hoxb8-203,Hoxb7;Hoxb7;Hoxb8;Hoxb8;Hoxb8,0;-1931;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,8,15415,ENSMUSG00000038721,conserved gene and region,11,96286678,96287286,609,*,609,56,0.622331691,0.952625698,0.091954023,1.47E-40,CpGisland,TRUE,U3,Pr-B
22619,cg09879581,-0.0000106,0.0000246,-0.42877532,0.668384536,loss,ns,-0.0000324,0.0000419,-0.774547521,0.439197423,neg,ns,0.020212647,0.012261923,1.648407635,0.100282105,pos,ns,0.998776559,-0.000736048,0.000421687,-1.745485182,0.081891217,neg,ns,0.436963437,Msi1,Msi1_Exon,5,115436638,115436687,115436686,115436687,50,-,GCGGCCGCGTCTTTTGTTCGGGCCTAAATCGGCGTTGGCATGTGAAACCG,"Exon (4930430O22Rik-202/4930430O22Rik-202, exon 1 of 1)",5,115429599,115455698,26100,1,Msi1-208,7039,Msi1-208;Msi1-209;Msi1-201;Msi1-203;Msi1-206;Msi1-205;Msi1-207;Msi1-204;Msi1-202,Msi1;Msi1;Msi1;Msi1;Msi1;Msi1;Msi1;Msi1;Msi1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,14,17690,ENSMUSG00000054256,conserved gene but different region,5,115436495,115436692,198,*,198,21,0.666666667,0.956521739,0.106060606,6.93E-17,CpGisland,TRUE,U3,Pr-B
16211,cg04701542,0.00000448,0.00000448,1.000607573,0.317796962,gain,ns,0.00000589,0.00000761,0.77452265,0.439212103,pos,ns,-0.00274283,0.002229348,-1.230328475,0.219506908,neg,ns,0.658551809,0.000179972,0.0000767,2.347444819,0.019531361,pos,ns,0.918117953,Vsx2,Vsx2_Exon,12,84593044,84593093,84593092,84593093,50,+,GGCCTCTCTCTATCTTTGCCGTTTTCAGTTCAAGATGGCTTTCCCAGGCG,"Exon (Vsx2-202/Vsx2, exon 5 of 5)",12,84569762,84595457,25696,1,Vsx2-201,23282,Vsx2-201;Vsx2-202,Vsx2;Vsx2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,20,12677,ENSMUSG00000021239,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18663,cg26445924,-0.00000419,0.00000175,-2.397002466,0.017121626,loss,ns,-0.0000023,0.00000297,-0.774476152,0.439239548,neg,ns,-0.000578494,0.000869392,-0.665400252,0.506289284,neg,ns,0.295601265,-0.00000237,0.0000299,-0.079227109,0.9369031,neg,ns,0.968332227,Skap1,Skap1_Intron,11,96634138,96634187,96634186,96634187,50,-,ACATAAACAACAATTTACACCCAGCATTTATTCTGGAAATTACAGTATCG,"Intron (Skap1-204/Skap1, intron 4 of 12)",11,96464593,96758941,294349,1,Skap1-204,169545,Skap1-204;Skap1-203;Skap1-209;Skap1-201;Skap1-206;Skap1-208,Skap1;Skap1;Skap1;Skap1;Skap1;Skap1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,40,46,78473,ENSMUSG00000057058,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9185,cg24848182,0.0000309,0.0000167,1.845977607,0.065848731,gain,ns,-0.000022,0.0000284,-0.774377715,0.439297655,neg,ns,0.014820407,0.008328278,1.779528249,0.076132816,pos,ns,1.118428106,-0.000760221,0.000286409,-2.654323034,0.008356868,neg,ns,0.441809644,Cadm1,Cadm1_Intergenic_upstream,9,47423573,47423622,47423573,47423574,50,+,CGGGTTTGATTGCTTTGTTCAGATATTAAAAAGGTTGAGCAAGGACTTTC,Distal Intergenic,9,47530173,47853385,323213,1,Cadm1-204,-106551,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,18,77,54725,ENSMUSG00000032076,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
27882,cg27135856,-0.00000581,0.00000312,-1.865130617,0.063107723,loss,ns,0.0000041,0.0000053,0.77434334,0.439317947,pos,ns,0.003415029,0.00155171,2.200815754,0.028486102,pos,ns,1.545366973,-0.000151306,0.0000534,-2.835394478,0.004877739,neg,ns,0.949311707,Prox1,Prox1_threeUTR,1,190118668,190118717,190118668,190118669,50,-,CGGTTTATACTATATACATATGAGAAATGGCTGGGACAATATTGAGGGAA,3' UTR,1,190118035,190170714,52680,2,Prox1-202,51997,Prox1-202;Prox1-201;Prox1-203,Prox1;Prox1;Prox1,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,59,19130,ENSMUSG00000010175,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25126,cg19873559,0.0000592,0.0000141,4.187697701,0.0000368,gain,ns,-0.0000186,0.000024,-0.77430743,0.439339146,neg,ns,0.03828973,0.007034954,5.442782893,0.000000107,pos,ns,6.971591366,-0.000989595,0.000241932,-4.090394329,0.0000549,neg,ns,0.455938611,Ahdc1,Ahdc1_Intron,4,133043001,133043050,133043049,133043050,50,-,AGTGTCACACTATCTCTCCCCAGGTTTACTGACCCATTTCCATTCACGCG,"Intron (Ahdc1-210/Ahdc1, intron 2 of 3)",4,133011260,133060820,49561,1,Ahdc1-210,31741,Ahdc1-210;Ahdc1-203;Ahdc1-204;Ahdc1-205;Ahdc1-207;Ahdc1-211;Ahdc1-209;Ahdc1-206;Ahdc1-201;Ahdc1-202,Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,35,49,230793,ENSMUSG00000037692,conserved gene and region,4,133043047,133043197,151,*,151,12,0.635761589,0.795085564,0.079470199,2.68E-08,CpGisland,TRUE,U8,En-Pd
7956,cg26776127,0.0000491,0.00000439,11.16175241,1.53E-24,gain,yes,-0.00000578,0.00000747,-0.774097443,0.439463121,neg,ns,0.007127472,0.002187248,3.258648573,0.001243753,pos,ns,2.905265892,-0.0000749,0.0000752,-0.996190354,0.319934611,neg,ns,0.122251769,Pax2,Pax2_Intergenic_upstream,19,44670377,44670426,44670425,44670426,50,-,CTGCTGAGTGCTTAATGGTGCATAAGATTAAGCCGAGGCTCTCAGCTGCG,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-85668,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,19,44670410,44670516,107,*,107,13,0.672897196,1.074131274,0.121495327,2.26E-11,CpGisland,TRUE,U13,Hc-P
20718,cg09410305,-0.00000529,0.00000444,-1.191154902,0.234503991,loss,ns,0.00000584,0.00000754,0.773973419,0.439536353,pos,ns,-0.001566525,0.002209308,-0.709056587,0.478822264,neg,ns,0.319825664,-0.0000348,0.000076,-0.457863106,0.647371552,neg,ns,0.907745749,Cstf3,Cstf3_Exon,2,104609127,104609176,104609127,104609128,50,+,CGCCTTGTTGCCCAGTTCCCCAGTTCTGGCAGATTCTGGAAACTGTACAT,"Exon (Cstf3-201/Cstf3, exon 3 of 21)",2,104590523,104665429,74907,1,Cstf3-201,18604,Cstf3-201;Cstf3-202;Cstf3-206,Cstf3;Cstf3;Cstf3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,6,228410,ENSMUSG00000027176,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8147,cg17173497,0.0000223,0.00000666,3.343512597,0.000928699,gain,ns,0.00000876,0.0000113,0.773778769,0.439651302,pos,ns,0.005700524,0.003316156,1.719015625,0.086609798,pos,ns,1.062432976,-0.000178945,0.000114042,-1.569106128,0.117643335,neg,ns,0.116705848,Ldb2,Ldb2_Exon,5,44799369,44799418,44799369,44799370,50,-,CGAGACTGCAGTCTCTTGTTCATCTCATAGATTCGGTACTCTGGCTGTAC,Promoter (<=1kb),5,44472132,44799619,327488,2,Ldb2-207,201,Ldb2-207;Ldb2-201;Ldb2-204;Ldb2-205;Ldb2-203,Ldb2;Ldb2;Ldb2;Ldb2;Ldb2,0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,9,16826,ENSMUSG00000039706,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24557,cg14314614,-0.0000151,0.00000295,-5.13166824,0.000000508,loss,yes,-0.00000388,0.00000501,-0.773766194,0.439658729,neg,ns,-0.003033615,0.001469077,-2.064979501,0.039756135,neg,ns,1.400595839,-0.0000252,0.0000505,-0.497845221,0.61894611,neg,ns,0.082284937,Zmym4,Zmym4_fiveUTR,4,126968095,126968144,126968095,126968096,50,-,CGGGGGGTTAATGGCCTCCAAGGGGCCCCGTGAGTAGGATTATTTTCTCT,Promoter (<=1kb),4,126861939,126968135,106197,2,Zmym4-201,0,Zmym4-201;Zmym4-209;Zmym4-202,Zmym4;Zmym4;Zmym4,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,8,67785,ENSMUSG00000042446,conserved gene and region,4,126967482,126968160,679,*,679,84,0.773195876,0.847917224,0.12371134,2.00E-72,CpGisland,TRUE,U1,Pr-A
27220,cg04036118,-0.000000297,0.00000368,-0.08074974,0.935693085,loss,ns,0.00000484,0.00000625,0.773760238,0.439662246,pos,ns,0.005112352,0.001831077,2.791992108,0.005563721,pos,ns,2.254634694,-0.000144155,0.000063,-2.289237732,0.022737589,neg,ns,0.925600943,Rc3h1,Rc3h1_threeUTR,1,160969628,160969677,160969676,160969677,50,-,AGAACACTCTTTTGAGTAGCAATTATTTAATTTGCCCAGTCAAGGCACCG,3' UTR,1,160906418,160974978,68561,1,Rc3h1-202,63210,Rc3h1-202;Rc3h1-204;Rc3h1-201,Rc3h1;Rc3h1;Rc3h1,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,8,381305,ENSMUSG00000040423,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22873,cg15680153,-0.00000609,0.0000191,-0.319726106,0.749391334,loss,ns,-0.000025,0.0000324,-0.773742395,0.439672784,neg,ns,0.008379693,0.009482876,0.883665742,0.377561465,pos,ns,0.423012337,-0.000314748,0.000326115,-0.965144287,0.335224847,neg,ns,0.505606839,Meis2,Meis2_Intron,2,116061172,116061221,116061220,116061221,50,+,AAAAGGCCAAGCCCCAGATTAGGAGCAGGTCAACTTTAATTCGAGGGTCG,"Intron (Meis2-201/Meis2, intron 3 of 11)",2,115863064,116065047,201984,2,Meis2-201,3826,Meis2-201;Meis2-203;Meis2-205;Meis2-206;Meis2-204;Meis2-202;Meis2-213;Meis2-210;Meis2-209;Meis2-212,Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2,0;0;0;0;0;0;0;0;0;-2330,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,45,97,17536,ENSMUSG00000027210,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
80,cg16696711,0.0000133,0.00000165,8.068915533,1.57E-14,gain,yes,-0.00000217,0.0000028,-0.773540978,0.439791751,neg,ns,-0.0000227,0.000821527,-0.027648596,0.977960213,neg,ns,0.009678814,0.00000633,0.0000283,0.224194692,0.822753501,pos,ns,0.053034784,Plag1,Plag1_Promoter,4,3937426,3937475,3937474,3937475,50,+,CATTTTGGTTGTTTATGATACTGACAACAAGCTGTCCCTGCTCTGTGCCG,Promoter (<=1kb),4,3900996,3938382,37387,2,Plag1-201,907,Chchd7-202;Chchd7-206;Chchd7-213;Chchd7-207;Chchd7-208;Chchd7-201;Chchd7-205;Chchd7-214;Chchd7-203;Chchd7-209;Chchd7-210;Chchd7-211;Chchd7-204;Plag1-201;Plag1-202;Plag1-204;Plag1-203,Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Plag1;Plag1;Plag1;Plag1,-1413;-1413;-1415;-1439;-1439;-1439;-1439;-1439;-1445;-1568;-1947;-2025;-3379;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,8,22,56711,ENSMUSG00000003282,conserved gene and region,4,3937469,3937566,98,*,98,13,0.744897959,1.166666667,0.132653061,6.56E-12,CpGisland,TRUE,U1,Pr-A
24761,cg13983233,-0.0000303,0.00000617,-4.911499851,0.00000147,loss,yes,-0.00000811,0.0000105,-0.773523801,0.439801897,neg,ns,-0.008646379,0.003072893,-2.813758979,0.005209452,neg,ns,2.28320797,0.00024995,0.000105677,2.365233642,0.018634131,pos,ns,0.856119202,Ankrd52,Ankrd52_Exon,10,128378132,128378181,128378132,128378133,50,-,CGATGTCCCCATCCTCCAGTTGCTACTGATGTCAGGTGAAAGTGGGGAGC,"Exon (Ankrd52-203/Ankrd52, exon 3 of 15)",10,128377115,128385496,8382,1,Ankrd52-203,1017,Ankrd52-203;Ankrd52-201,Ankrd52;Ankrd52,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,12,237615,ENSMUSG00000014498,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U4,Pr-F
22446,cg00424298,0.0000992,0.0000121,8.170953404,7.86E-15,gain,yes,-0.000016,0.0000206,-0.773406852,0.439870982,neg,ns,0.003129981,0.006043774,0.51788516,0.604907783,pos,ns,0.218310828,-0.000166468,0.000207845,-0.800922997,0.42378964,neg,ns,0.612516763,Fam222a,Fam222a_Intron,5,114571835,114571884,114571835,114571836,50,+,CGCCCTGATTGGTTGCTAAGTGATTTGCATCCAAGGTAATCACTTTTATC,"Intron (Fam222a-201/Fam222a, intron 1 of 2)",5,114568016,114613220,45205,1,Fam222a-201,3819,Fam222a-201;Fam222a-202,Fam222a;Fam222a,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,16,433940,ENSMUSG00000041930,conserved gene and region,5,114571569,114571856,288,*,288,32,0.645833333,1.067531565,0.111111111,3.20E-26,CpGisland,TRUE,NA,NRS
18700,cg24512571,-0.00000223,0.0000109,-0.204938661,0.837754545,loss,ns,0.0000143,0.0000185,0.773325755,0.439918892,pos,ns,0.008809411,0.005421985,1.624757731,0.105230432,pos,ns,0.977858646,-0.000450097,0.000186462,-2.413883546,0.016362817,neg,ns,0.486804735,Skap1,Skap1_Intron,11,96746961,96747010,96747009,96747010,50,+,GTGGACTCCCCAGCAATTCATCAAAGTAGAAATTATTTTAAAATACCTCG,"Intron (Skap1-204/Skap1, intron 11 of 12)",11,96464593,96758941,294349,1,Skap1-204,282368,Skap1-204;Skap1-203;Skap1-201,Skap1;Skap1;Skap1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,40,46,78473,ENSMUSG00000057058,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6769,cg03709033,-0.00000191,0.00000409,-0.467106815,0.640751598,loss,ns,-0.00000538,0.00000695,-0.773275356,0.439948668,neg,ns,0.0000578,0.00203755,0.02835524,0.977397069,pos,ns,0.009928968,0.0000259,0.0000701,0.370031961,0.71161135,pos,ns,0.098131479,Lhx2,Lhx2_Exon,2,38369044,38369093,38369044,38369045,50,+,CGTCCGTCTTAACTTCTGTGCCTGGCAACCTGGAGGGCCATGAGCCTCAC,"Exon (Lhx2-203/Lhx2, exon 5 of 5)",2,38339281,38369199,29919,1,Lhx2-203,29763,Lhx2-203;Lhx2-201,Lhx2;Lhx2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,33,16870,ENSMUSG00000000247,conserved gene but different region,2,38368780,38369163,384,*,384,25,0.611979167,0.752941177,0.065104167,1.03E-14,CpGisland,TRUE,U3,Pr-B
22999,cg04863645,-0.000000147,0.000000707,-0.207757207,0.835554965,loss,ns,0.000000929,0.0000012,0.77327305,0.439950031,pos,ns,0.000146289,0.000351795,0.415836107,0.677817647,pos,ns,0.168887128,-0.0000189,0.0000121,-1.562018912,0.119303782,neg,ns,0.984984103,Rbms3,Rbms3_Exon,9,116681167,116681216,116681167,116681168,50,-,CGTGATAGATGTCTGTGGAATCATGCGGTTGGTTGCAATACTGTACGGTG,"Exon (Rbms3-206/Rbms3, exon 9 of 15)",9,116572746,117252463,679718,2,Rbms3-206,571247,Rbms3-206;Rbms3-202;Rbms3-210;Rbms3-212;Rbms3-207;Rbms3-214;Rbms3-205;Rbms3-201;Rbms3-208;Rbms3-203,Rbms3;Rbms3;Rbms3;Rbms3;Rbms3;Rbms3;Rbms3;Rbms3;Rbms3;Rbms3,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,207181,ENSMUSG00000039607,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26156,cg21066109,-0.0000188,0.00000959,-1.958044855,0.051121429,loss,ns,0.0000126,0.0000163,0.773269828,0.439951934,pos,ns,-0.002752599,0.004770873,-0.576959233,0.564385728,neg,ns,0.248423977,-0.0000909,0.00016407,-0.55383601,0.580090338,neg,ns,0.321746302,Lmo4,Lmo4_Exon,3,144198443,144198492,144198491,144198492,50,+,ATATAGCAGCTTGCTGTTGATTACCAGGGAAATGAACTCGCTGTCTGGCG,"Exon (Gm43445-201/Gm43445-201, exon 1 of 1)",3,144188530,144202396,13867,2,Lmo4-203,3904,Lmo4-203;Lmo4-201;Lmo4-202;Lmo4-207;Lmo4-206;Lmo4-208;Lmo4-205;Lmo4-204,Lmo4;Lmo4;Lmo4;Lmo4;Lmo4;Lmo4;Lmo4;Lmo4,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,18,54,16911,ENSMUSG00000028266,conserved gene but different region,3,144198491,144198963,473,*,473,49,0.699788584,0.854672174,0.10359408,2.85E-38,CpGisland,TRUE,NA,NRS
26358,cg15078491,-0.0000169,0.00000879,-1.91889509,0.055915641,loss,ns,-0.0000116,0.0000149,-0.773194665,0.439996343,neg,ns,-0.004401758,0.004376466,-1.005778995,0.315306306,neg,ns,0.501267343,0.000161871,0.000150506,1.075508528,0.282983454,pos,ns,0.939776326,Mtif3,Mtif3_Intergenic_upstream,5,146986202,146986251,146986202,146986203,50,+,CGGCATTAATTAATGGGTGAATTTCACTTTAATAAATGTATAGGCAATTT,Distal Intergenic,5,146958948,146963800,4853,2,Mtif3-206,-22402,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,76366,ENSMUSG00000016510,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26600,cg03676977,0.000000615,0.0000016,0.383892659,0.701321176,gain,ns,0.00000211,0.00000272,0.77316177,0.44001578,pos,ns,0.001772231,0.000797739,2.221567399,0.027034503,pos,ns,1.568081617,-0.0000999,0.0000274,-3.640241332,0.000319048,neg,ns,0.97063959,Pex14,Pex14_Intron,4,148967381,148967430,148967381,148967382,50,+,CGGCTTCATTTGCAAATGTGAACAGATTCTCAGAGCAGATAAATGAAGTC,"Intron (Gm17029-201/Gm17029-201, intron 2 of 2)",4,148960535,149099876,139342,2,Pex14-201,132446,Pex14-201;Pex14-202,Pex14;Pex14,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,41,48,56273,ENSMUSG00000028975,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24560,cg02163190,0.00000245,0.00000784,0.312994059,0.754495641,gain,ns,0.0000103,0.0000133,0.773142248,0.440027314,pos,ns,0.004256716,0.003900062,1.091448373,0.275923193,pos,ns,0.559211793,-0.000348259,0.000134123,-2.596567238,0.009864739,neg,ns,0.793144721,Fgf6,Fgf6_Promoter,6,127015456,127015505,127015504,127015505,50,-,GGTTTCATGTCAGCAGCCTTCATCTGCCTTCCAAAAATAAGCCCCTGCCG,Promoter (<=1kb),6,127015586,127028187,12602,1,Fgf6-201,-130,Fgf6-201,Fgf6,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,5,14177,ENSMUSG00000000183,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2319,cg12741020,0.000195972,0.0000137,14.29774389,5.76E-36,gain,yes,-0.000018,0.0000233,-0.773110706,0.440045952,neg,ns,-0.003416754,0.006821848,-0.500854583,0.616828892,neg,ns,0.209835292,0.000770879,0.000234603,3.285889601,0.001133177,pos,ns,0.518831944,Meis1,Meis1_Exon,11,19014324,19014373,19014324,19014325,50,+,CGCGGGGGGTACAAGTAGCTAATTCACATTTCTCAAAAATCAGTGCTAAG,"Exon (Meis1-206/Meis1, exon 3 of 10)",11,18879817,19018985,139169,2,Meis1-206,4612,Meis1-206;Meis1-202;Meis1-209;Meis1-201;Meis1-203;Meis1-208;Meis1-207;Meis1-204;Meis1-205,Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,21,88,17268,ENSMUSG00000020160,mapped to different genes,11,19014258,19014327,70,*,70,9,0.628571429,1.448275862,0.128571429,3.78E-08,CpGisland,TRUE,NA,NRS
1521,cg02708939,0.0000105,0.0000057,1.843313098,0.066237751,gain,ns,0.00000748,0.00000968,0.772936677,0.440148791,pos,ns,0.000302708,0.002836254,0.106727992,0.91507381,pos,ns,0.038543874,-0.000303635,0.0000975,-3.112970228,0.002024856,neg,ns,0.666467319,Gm11819,Gm11819_Intergenic_upstream,4,13409658,13409707,13409658,13409659,50,-,CGTAGGCCTTTGGGGAGCTTGATTAAGGGTTGCTTCAGAGAACTTGAGAT,Distal Intergenic,4,13444770,13445141,372,1,Gm11819-201,-35112,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,19,22,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17020,cg14073144,-0.00000139,0.00000121,-1.148820572,0.251515611,loss,ns,0.00000158,0.00000205,0.772920085,0.440158597,pos,ns,0.000348469,0.000600433,0.580362424,0.562091855,pos,ns,0.250192708,-0.0000282,0.0000206,-1.36369304,0.173653608,neg,ns,0.955393729,Hmces,Hmces_threeUTR,6,87917899,87917948,87917947,87917948,50,+,TTCAAAGAAAGTGATCCTTCCAAGCTGCAGTTCAATACTACCAACTGTCG,Promoter (<=1kb),6,87917924,87933425,15502,1,Hmces-203,0,Copg1-202;Hmces-201;Hmces-207;Hmces-204;Hmces-206;Hmces-202;Hmces-203,Copg1;Hmces;Hmces;Hmces;Hmces;Hmces;Hmces,30085;0;0;3941;0;0;0,TRUE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,232210,ENSMUSG00000030060,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1761,cg20002283,0.00000299,0.00000326,0.918326751,0.359161767,gain,ns,0.00000428,0.00000553,0.772773899,0.440244994,pos,ns,0.003775439,0.001621416,2.32848244,0.020529327,pos,ns,1.687625295,-0.000118218,0.0000558,-2.120106721,0.034791184,neg,ns,0.047123325,Kctd1,Kctd1_Intron,18,15063641,15063690,15063689,15063690,50,-,AATGACCTTCAGCTACCGGGAGGCAAAGCCGGGCTCTTAAAGGAGCCGCG,"Intron (Kctd1-201/Kctd1, intron 1 of 4)",18,14968685,15151446,182762,2,Kctd1-201,87756,Kctd1-201;Kctd1-202;Kctd1-206;Kctd1-205,Kctd1;Kctd1;Kctd1;Kctd1,0;0;0;-1752,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,24,106931,ENSMUSG00000036225,conserved gene and region,18,15063315,15063752,438,*,438,43,0.673515982,0.892352885,0.098173516,1.42E-32,CpGisland,TRUE,U3,Pr-B
25972,cg13141854,-0.00000809,0.00000303,-2.669885333,0.007987696,loss,ns,0.00000398,0.00000515,0.772732517,0.440269454,pos,ns,0.001257134,0.001508481,0.833377823,0.405273314,pos,ns,0.392251992,-0.0000535,0.0000519,-1.030809406,0.303433758,neg,ns,0.906123239,Pdlim5,Pdlim5_Exon,3,142303354,142303403,142303402,142303403,50,+,AAACTTCATGGTGCCAGTCACGTAATTTTGTGTATTTGGGACTAAAGACG,"Exon (Pdlim5-205/Pdlim5, exon 9 of 9)",3,142239590,142395693,156104,2,Pdlim5-201,92290,Pdlim5-201;Pdlim5-206;Pdlim5-208;Pdlim5-212;Pdlim5-211;Pdlim5-213;Pdlim5-210;Pdlim5-205;Pdlim5-203;Pdlim5-204;Pdlim5-209;Pdlim5-202,Pdlim5;Pdlim5;Pdlim5;Pdlim5;Pdlim5;Pdlim5;Pdlim5;Pdlim5;Pdlim5;Pdlim5;Pdlim5;Pdlim5,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,6,56376,ENSMUSG00000028273,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1790,cg12553481,-0.00000414,0.00000437,-0.945170208,0.345308082,loss,ns,0.00000574,0.00000743,0.772653873,0.440315939,pos,ns,0.001229404,0.002177458,0.564605248,0.572750597,pos,ns,0.242034449,-0.000109635,0.0000749,-1.464086406,0.144183635,neg,ns,0.926970106,Foxp2,Foxp2_Intron,6,15203244,15203293,15203244,15203245,50,+,CGTCTACCACATGATGACACTAAAGATATATGATATGACTGACAGTGTAG,"Intron (Foxp2-207/Foxp2, intron 4 of 18)",6,14901349,15441977,540629,1,Foxp2-207,301895,Foxp2-207;Foxp2-213;Foxp2-208;Foxp2-211;Foxp2-203;Foxp2-205;Foxp2-204;Foxp2-201;Foxp2-210;Foxp2-214;Foxp2-212;Foxp2-209;Foxp2-202,Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,38,65,114142,ENSMUSG00000029563,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22866,cg03761512,-0.0000126,0.00000791,-1.588264967,0.113245802,loss,ns,0.0000104,0.0000134,0.772645671,0.440320787,pos,ns,0.011817967,0.003938752,3.00043455,0.002914723,pos,ns,2.535402742,-0.000497321,0.000135453,-3.671532771,0.000283844,neg,ns,0.80028318,Meis2,Meis2_Intron,2,116043296,116043345,116043296,116043297,50,-,CGTAAATGTCTGAGAACTGATTCCAACAAGAATTTAGTCTCAGAGCAGAA,"Intron (Meis2-201/Meis2, intron 7 of 11)",2,115863064,116065047,201984,2,Meis2-201,21702,Meis2-201;Meis2-203;Meis2-205;Meis2-206;Meis2-204;Meis2-202;Meis2-216;Meis2-217;Meis2-213;Meis2-211,Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,45,97,17536,ENSMUSG00000027210,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23808,cg05642505,0.00000299,0.00000172,1.734372912,0.083845982,gain,ns,-0.00000226,0.00000293,-0.77240832,0.440461099,neg,ns,0.00080203,0.000857222,0.935616004,0.350199188,pos,ns,0.455684865,-0.0000577,0.0000295,-1.957413534,0.051195904,neg,ns,0.028803787,Lhx5,Lhx5_Promoter,5,120427864,120427913,120427912,120427913,50,-,TAATGAATCCGGCGAGCAATTTAAATTTACAATTTGTAACGCCGCCGCCG,Promoter (3-4kb),5,120431699,120441223,9525,1,Lhx5-201,-3835,Lhx5-201,Lhx5,0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,7,14,16873,ENSMUSG00000029595,mapped to different genes,5,120427837,120427983,147,*,147,15,0.544217687,1.381578947,0.102040816,6.81E-12,CpGisland,TRUE,U13,Hc-P
14709,cg01349535,0.0000546,0.0000177,3.0893444,0.002187719,gain,ns,0.0000232,0.00003,0.772279535,0.440537242,pos,ns,0.005728251,0.008802499,0.650752781,0.515688117,pos,ns,0.287612876,0.000370884,0.000302717,1.225184202,0.221435895,pos,ns,0.437758022,Gm21816,Gm21816_Intron,16,77406048,77406097,77406048,77406049,50,-,CGATCTCATTCTGGTGTCATTCAATTAAGACAGAAATGTGATGGATAGTC,"Intron (Mir99ahg-207/Mir99ahg-207, intron 4 of 7)",16,77400847,77401208,362,1,Gm21816-201,5250,Gm21816-201,Gm21816,5201,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,8,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14553,cg03045876,0.000227328,0.000012,19.01717801,5.53E-54,gain,yes,-0.0000157,0.0000203,-0.772183736,0.440593887,neg,ns,0.024248162,0.005949551,4.075629095,0.0000584,pos,ns,4.23386324,-0.000400675,0.000204605,-1.958290714,0.05109245,neg,ns,0.197113012,Hspa2,Hspa2_Exon,12,76405268,76405317,76405316,76405317,50,-,GGAGGAGTTCAAGCGCAAGCACAAGAAGGACATTGGGCCCAACAAGCGCG,"Exon (Hspa2-201/Hspa2, exon 2 of 2)",12,76404176,76406938,2763,1,Hspa2-201,1092,Hspa2-201;Hspa2-202,Hspa2;Hspa2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,15512,ENSMUSG00000059970,conserved gene and region,12,76404926,76405509,584,*,584,56,0.630136986,0.96623039,0.095890411,1.23E-41,CpGisland,TRUE,U3,Pr-B
669,cg10140814,-0.0000106,0.00000485,-2.194151013,0.028966403,loss,ns,0.00000636,0.00000823,0.772161189,0.44060722,pos,ns,0.002486138,0.002412224,1.030641109,0.303512576,pos,ns,0.51782331,-0.000283413,0.000083,-3.416412929,0.000719145,neg,ns,0.894567839,Mmp20,Mmp20_Intron,9,7642892,7642941,7642892,7642893,50,+,CGTCCCAAGCCACCCTTTAACTAGGGGGGCTGGCTAGGAAAAACAAGTAA,"Intron (Mmp20-201/Mmp20, intron 4 of 9)",9,7628231,7674979,46749,1,Mmp20-201,14661,Mmp20-201,Mmp20,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,2,30800,ENSMUSG00000018620,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19523,cg07229058,0.0000334,0.000015,2.223231258,0.026920943,gain,ns,0.0000197,0.0000255,0.77208876,0.44065005,pos,ns,-0.005650007,0.007482605,-0.75508563,0.450770886,neg,ns,0.346044142,0.000302241,0.000257326,1.174544397,0.241078487,pos,ns,0.761822494,Pja1,Pja1_Intergenic_upstream,X,99562322,99562371,99562370,99562371,50,-,GATTTCATGCTCAATATTCTTGATGAAAGTGGAACATCAAAACCTCAGCG,Distal Intergenic,20,99465734,99471273,5540,2,Pja1-203,-91098,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,17,18744,ENSMUSG00000034403,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3119,cg13446573,-0.0000133,0.00000789,-1.687841864,0.092447343,loss,ns,0.0000103,0.0000134,0.771820371,0.440808781,pos,ns,-0.00964036,0.00392711,-2.454822999,0.014644594,neg,ns,1.834322677,0.000324173,0.000135053,2.400336466,0.016969349,pos,ns,0.665910259,Gm11879,Gm11879_Intergenic_downstream,4,22836128,22836177,22836176,22836177,50,-,GTTATCTCATAGCACAATGGACTTTTGTGCCATGCTGTTTACTGGAGGCG,Distal Intergenic,4,22704057,22704758,702,1,Gm11879-201,132120,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,19,19,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13760,cg25974040,-0.000024,0.0000065,-3.685085515,0.000269762,loss,ns,-0.00000853,0.000011,-0.771768958,0.440839191,neg,ns,-0.005927769,0.003236737,-1.831402487,0.068000039,neg,ns,1.167490837,-0.000039,0.000111311,-0.350137944,0.726472951,neg,ns,0.891538866,Gm6995,Gm6995_Intergenic_downstream,18,72404143,72404192,72404143,72404144,50,+,CGCTCTCTGTCATTTTCTGAGCTATGTTGCAGTTAAGAAAGCTGTCATAC,Distal Intergenic,18,72426526,72427108,583,2,Gm6995-201,22916,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,2,629684,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6333,cg02231349,-0.0000555,0.00000874,-6.349248902,7.69E-10,loss,yes,0.0000115,0.0000148,0.771714057,0.440871666,pos,ns,-0.005373318,0.004349029,-1.235521292,0.21757204,neg,ns,0.662396916,0.000120754,0.000149563,0.807382576,0.42006515,pos,ns,0.804247665,Pknox2,Pknox2_Exon,9,36922296,36922345,36922296,36922297,50,+,CGAGATGCTCGTTGAGCAATTATTGTCCTCTTTTATGCAAGTTTCTTGCT,"Exon (Pknox2-204/Pknox2, exon 6 of 6)",9,36890982,37083309,192328,2,Pknox2-207,160964,Pknox2-207;Pknox2-201;Pknox2-202;Pknox2-203;Pknox2-206;Pknox2-204,Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,47,208076,ENSMUSG00000035934,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19027,cg20866050,0.000000304,0.00000303,0.100358156,0.920124861,gain,ns,0.00000398,0.00000515,0.771683512,0.440889735,pos,ns,0.004503321,0.001510083,2.982168679,0.003089145,pos,ns,2.510161701,-0.000129593,0.0000519,-2.495454294,0.013099294,neg,ns,0.939788355,Med1,Med1_Exon,11,98189192,98189241,98189192,98189193,50,-,CGCACAAGCTTAATGGTTTCACTCCAGGGTCTATTTTGGTTAAATTTTGC,"Exon (Med1-202/Med1, exon 2 of 18)",11,98152154,98193260,41107,2,Med1-202,4019,Gm11604-201;Med1-202;Med1-203;Med1-201;Med1-205,Gm11604;Med1;Med1;Med1;Med1,3826;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,13,19014,ENSMUSG00000018160,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26938,cg14627595,-0.0000152,0.0000124,-1.223591326,0.222035655,loss,ns,0.0000163,0.0000211,0.771281218,0.441127746,pos,ns,0.004155365,0.006182015,0.672169974,0.50197615,pos,ns,0.299316916,-0.000344013,0.000212599,-1.618132674,0.106650979,neg,ns,0.688964547,Stx6,Stx6_Exon,1,155193246,155193295,155193294,155193295,50,+,TTGGAGCTGGTCTCTGGCAGCATCGGGGTGCTGAAGAACATGTCCCAGCG,"Exon (Stx6-201/Stx6, exon 6 of 8)",1,155158715,155205659,46945,1,Stx6-201,34531,Stx6-201;Stx6-207;Stx6-209;Stx6-205;Stx6-203;Stx6-210;Stx6-204;Stx6-206;Stx6-208,Stx6;Stx6;Stx6;Stx6;Stx6;Stx6;Stx6;Stx6;Stx6,0;0;0;34475;8936;0;0;0;-1726,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,58244,ENSMUSG00000026470,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17374,cg23501244,0.0000832,0.0000151,5.514649189,7.37E-08,gain,yes,-0.0000198,0.0000256,-0.771274778,0.441131557,neg,ns,0.00911586,0.007513063,1.213334745,0.225925545,pos,ns,0.646034661,-0.000394247,0.000258374,-1.525881359,0.128058984,neg,ns,0.729533912,Gbx2,Gbx2_Intergenic_downstream,1,89925786,89925835,89925834,89925835,50,-,TGAGGTGCTGGCCGAGCCTCGTGGGTCTCATTAATCAGCCAGCTGAGACG,Distal Intergenic,1,89927966,89929185,1220,2,Gbx2-202,3399,Gbx2-201;Gbx2-202,Gbx2;Gbx2,0;3350,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,13,14472,ENSMUSG00000034486,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
14189,cg15376789,0.00006,0.00000504,11.91207963,3.42E-27,gain,yes,-0.0000066,0.00000855,-0.771096269,0.441237193,neg,ns,0.004809796,0.002506324,1.919063668,0.055894217,pos,ns,1.252633126,-0.00018982,0.0000862,-2.202288456,0.028380905,neg,ns,0.118749968,Gm28230,Gm28230_Intron,2,74736228,74736277,74736228,74736229,50,+,CGTGAACAAATATGCTTGCATTTGAAGGCAGCGTCTGTATTTCCCGACTA,"Intron (Hoxd3-203/Hoxd3, intron 1 of 2)",2,74726728,74747918,21191,1,Gm28230-201,9500,Gm28230-201;Hoxd3-203;Hoxd3-205;Hoxd3-202;Hoxd3-201,Gm28230;Hoxd3;Hoxd3;Hoxd3;Hoxd3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,23,,NA,mapped to different genes,2,74736090,74736344,255,*,255,15,0.576470588,0.712025317,0.058823529,1.87E-08,CpGisland,TRUE,U13,Hc-P
6139,cg05035366,-0.00000187,0.00000299,-0.625538899,0.53207766,loss,ns,0.00000392,0.00000509,0.771039548,0.441270762,pos,ns,-0.002000453,0.001489736,-1.342823439,0.180311521,neg,ns,0.743976523,0.0000535,0.0000512,1.044568737,0.297036178,pos,ns,0.976004974,Tenm2,Tenm2_Exon,11,36139620,36139669,36139668,36139669,50,+,TTGCCATCTTTACAGGTCCCGTGCTCAATGCAGCGGGGGTGGCACACGCG,"Exon (Tenm2-202/Tenm2, exon 14 of 31)",11,36006656,37235882,1229227,2,Tenm2-202,1096213,Tenm2-202;Tenm2-208;Tenm2-201;Tenm2-204;Tenm2-205,Tenm2;Tenm2;Tenm2;Tenm2;Tenm2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,21,84,23964,ENSMUSG00000049336,conserved gene and region,11,36139608,36139733,126,*,126,10,0.642857143,0.782608696,0.079365079,0.000000572,CpGisland,TRUE,U15,NS
21800,cg13089275,0.00000793,0.00000329,2.405883563,0.016718637,gain,ns,0.00000432,0.0000056,0.771011508,0.441287358,pos,ns,-0.000600469,0.001639867,-0.366169626,0.714488272,neg,ns,0.146004896,0.0000833,0.0000564,1.476404959,0.140850274,pos,ns,0.039497418,Lmo1,Lmo1_fiveUTR,7,109170441,109170490,109170441,109170442,50,-,CGGATTTAATCTGAATCTCAATCTAAAATTATATTCAAAGAGATGGGGGA,Promoter (<=1kb),7,109138572,109170519,31948,2,Lmo1-201,29,Lmo1-201;Lmo1-202;Lmo1-203,Lmo1;Lmo1;Lmo1,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,66,109594,ENSMUSG00000036111,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
24662,cg08163918,-0.0000892,0.0000356,-2.506174518,0.012716531,loss,ns,-0.0000466,0.0000605,-0.770918359,0.44134249,neg,ns,0.064513669,0.017720539,3.6406156,0.000318604,pos,ns,3.496748545,-0.002083879,0.000609408,-3.419514348,0.000711294,neg,ns,0.732141795,Ndufa4l2,Ndufa4l2_threeUTR,10,127517137,127517186,127517185,127517186,50,+,TTCATTTAACAAATTGAATTTGCTGCGCCTGCTAATCACGTCTGGTGTCG,3' UTR,10,127514967,127517154,2188,1,Ndufa4l2-201,2170,Ndufa4l2-203;Ndufa4l2-202;Ndufa4l2-201;Shmt2-206;Shmt2-201;Shmt2-207;Shmt2-203;Shmt2-204;Shmt2-205;Shmt2-202,Ndufa4l2;Ndufa4l2;Ndufa4l2;Shmt2;Shmt2;Shmt2;Shmt2;Shmt2;Shmt2;Shmt2,2170;2170;0;0;0;1590;1594;5216;5215;5178,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,3,407790,ENSMUSG00000040280,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
19288,cg25739107,-0.000000252,0.000000576,-0.437268479,0.66222111,loss,ns,0.000000755,0.000000979,0.770750152,0.441442057,pos,ns,-0.000541187,0.000286848,-1.886668467,0.060139301,neg,ns,1.220841627,0.0000124,0.00000986,1.254650558,0.210550742,pos,ns,0.987287852,Foxp1,Foxp1_threeUTR,6,98941001,98941050,98941049,98941050,50,-,ACAAGCTCGTCAAAGTTTTCATCGGGGCAGTATTTGCGAGGACGGCCTCG,3' UTR,6,98925338,99266515,341178,2,Foxp1-206,325465,Foxp1-206;Foxp1-204;Foxp1-220;Foxp1-230;Foxp1-225;Foxp1-201;Foxp1-205;Foxp1-207;Foxp1-208;Foxp1-226;Foxp1-228;Foxp1-221;Foxp1-222;Foxp1-210,Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,9,87,108655,ENSMUSG00000030067,mapped to different genes,6,98940999,98941068,70,*,70,8,0.6,1.281464531,0.114285714,0.000000774,CpGisland,TRUE,U10,Tr-S
21734,cg15188056,0.000000654,0.00000264,0.247997708,0.804300371,gain,ns,-0.00000345,0.00000448,-0.770710403,0.441465587,neg,ns,-0.003762247,0.001312588,-2.866282407,0.004437389,neg,ns,2.352872525,0.0000812,0.0000451,1.798462936,0.07307639,pos,ns,0.934673349,Zfhx3,Zfhx3_Intron,8,108942609,108942658,108942609,108942610,50,+,CGGGGAGAGTTAATTGATGGAAGGTGAAGGCAGACAAAGAACCGCTGCTT,"Intron (Zfhx3-204/Zfhx3, intron 13 of 15)",8,107942644,108961630,1018987,1,Zfhx3-204,999965,Zfhx3-204;Zfhx3-201,Zfhx3;Zfhx3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,114,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14899,cg20411672,-0.00000184,0.00000119,-1.551242319,0.1218639,loss,ns,0.00000156,0.00000202,0.77070935,0.441466211,pos,ns,0.000585402,0.000591842,0.98911744,0.323377078,pos,ns,0.490290767,-0.0000366,0.0000204,-1.798860032,0.073013387,neg,ns,0.976031466,Pax3,Pax3_Exon,1,78122740,78122789,78122740,78122741,50,-,CGGTTGCTAAACCAGACCTATGGATTTAATTTAAAATTTAAGGATTTCAC,"Exon (Pax3-201/Pax3, exon 6 of 9)",1,78101267,78196838,95572,2,Pax3-201,74049,Pax3-201;Pax3-202,Pax3;Pax3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,17,18505,ENSMUSG00000004872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
249,cg11694284,0.0000288,0.00000958,3.002087272,0.002899395,gain,ns,-0.0000125,0.0000163,-0.77063707,0.441509001,neg,ns,0.035564549,0.00476941,7.456802407,8.95E-13,pos,yes,12.04819624,-0.000766376,0.00016402,-4.672463126,0.00000444,neg,ns,0.530351687,Gm21992,Gm21992_Exon,19,4803905,4803954,4803953,4803954,50,+,CCTTGGTGGAGAGTTCCACGTTGATGCGCTTGCCCTTCACTTCTTTGCCG,"Exon (Rbm14-201/Rbm14, exon 2 of 3)",19,4742913,4811612,68700,2,Gm21992-203,7658,Gm21992-203;Gm21992-206;Gm21992-204;Gm21992-201;Gm21992-205;Gm21992-202;Rbm14-201;Rbm14-202;Rbm14-203,Gm21992;Gm21992;Gm21992;Gm21992;Gm21992;Gm21992;Rbm14;Rbm14;Rbm14,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,27,48,102902673,ENSMUSG00000096370,mapped to different genes,19,4803923,4804011,89,*,89,8,0.561797753,1.146537842,0.08988764,0.00000491,CpGisland,TRUE,U10,Tr-S
25993,cg07425219,0.00000895,0.00000372,2.403399499,0.016830502,gain,ns,-0.00000487,0.00000632,-0.770635874,0.441509709,neg,ns,0.00338349,0.001852466,1.82647914,0.068739728,pos,ns,1.162792193,-0.000246877,0.0000637,-3.875244786,0.000130015,neg,ns,0.757563958,Tmem164,Tmem164_Exon,X,142834267,142834316,142834267,142834268,50,-,CGGGACACCAGACTCTCATGACCATGACCCACGGGAAGCTGGTCATCCTG,"Exon (Tmem164-204/Tmem164, exon 6 of 7)",20,142681406,142843494,162089,1,Tmem164-204,152861,Tmem164-204;Tmem164-202;Tmem164-205;Tmem164-201;Tmem164-206;Tmem164-208;Tmem164-209;Tmem164-203,Tmem164;Tmem164;Tmem164;Tmem164;Tmem164;Tmem164;Tmem164;Tmem164,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,15,209497,ENSMUSG00000047045,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8669,cg07743958,0.000000153,0.00000252,0.060520318,0.951780232,gain,ns,0.0000033,0.00000428,0.770521658,0.44157733,pos,ns,0.001928279,0.001254203,1.537454104,0.125202173,pos,ns,0.902388133,-0.0000644,0.0000431,-1.4935401,0.136312958,neg,ns,0.946663003,Btrc,Btrc_Exon,19,45515919,45515968,45515967,45515968,50,+,CTGCACTTGCGTTTCAATAATGGCATGATGGTGACCTGCTCCAAAGATCG,"Exon (Btrc-201/Btrc, exon 10 of 15)",19,45363751,45530013,166263,1,Btrc-201,152168,Btrc-201;Btrc-210;Btrc-202;Btrc-209,Btrc;Btrc;Btrc;Btrc,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,30,98,12234,ENSMUSG00000025217,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9668,cg12597232,0.000071,0.00000822,8.62898072,3.28E-16,gain,yes,-0.0000108,0.000014,-0.770458215,0.441614895,neg,ns,0.010085023,0.004093051,2.463937934,0.014284531,pos,ns,1.845134002,-0.000245627,0.00014076,-1.74501046,0.081973959,neg,ns,0.176235976,Grin3a,Grin3a_Exon,4,49844604,49844653,49844604,49844605,50,+,CGCCCAGGCCTGCCTCGATGGCCATCACTACTTCCAAAGACAGGTTGTAG,Promoter (<=1kb),4,49661611,49845549,183939,2,Grin3a-201,896,Grin3a-201;Grin3a-202;Grin3a-203,Grin3a;Grin3a;Grin3a,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,242443,ENSMUSG00000039579,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
14665,cg26735835,-0.00000176,0.0000019,-0.9266343,0.35483728,loss,ns,-0.00000249,0.00000323,-0.770446236,0.441621988,neg,ns,-0.00137662,0.000945148,-1.456513327,0.146262848,neg,ns,0.834865973,0.0000483,0.0000325,1.486379912,0.138194964,pos,ns,0.946460999,Pias2,Pias2_threeUTR,18,77152622,77152671,77152670,77152671,50,-,CTCCTATGTTTTTGGATAGTCTCACCTCACCCTTAACAGCAAGCAGTACG,3' UTR,18,77065208,77153800,88593,1,Pias2-202,87414,Pias2-202;Pias2-204;Pias2-203,Pias2;Pias2;Pias2,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,3,17344,ENSMUSG00000025423,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2832,cg23895839,0.0000341,0.00000447,7.629987994,2.91E-13,gain,yes,0.00000585,0.00000759,0.770400748,0.441648921,pos,ns,0.002942982,0.002222992,1.323882982,0.186517286,pos,ns,0.729280913,0.0000316,0.0000764,0.413453565,0.6795602,pos,ns,0.035548641,Faxc,Faxc_Exon,4,21931791,21931840,21931791,21931792,50,-,CGCAGCTGCGTATCTGCTCCACGAACTCCTGGTCATTAGGTGAGCCGGAG,Promoter (<=1kb),4,21931329,21994146,62818,1,Faxc-204,462,Faxc-204;Faxc-201;Faxc-202;Faxc-203,Faxc;Faxc;Faxc;Faxc,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,76132,ENSMUSG00000028246,conserved gene and region,4,21931002,21931985,984,*,984,98,0.706300813,0.798767457,0.099593496,4.26E-74,CpGisland,TRUE,U3,Pr-B
15596,cg03901868,0.000110294,0.00000906,12.17487939,3.91E-28,gain,yes,-0.0000119,0.0000154,-0.770383424,0.44165918,neg,ns,0.008133533,0.004508833,1.803910812,0.072215925,pos,ns,1.141367021,-0.000101489,0.000155058,-0.654523933,0.513259618,neg,ns,0.128493504,Zfp804a,Zfp804a_Exon,2,82053797,82053846,82053845,82053846,50,+,TGTTACTACATTGTCATCAGCTCCACGCATCTCAGCAACGGACACTTTCG,Promoter (<=1kb),2,82053222,82259879,206658,1,Zfp804a-201,575,Zfp804a-201,Zfp804a,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,9,241514,ENSMUSG00000070866,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
19683,cg11423065,-0.000013,0.00000591,-2.198028828,0.0286861,loss,ns,0.00000773,0.00001,0.770377244,0.441662839,pos,ns,-0.001063739,0.002939279,-0.361904668,0.717669835,neg,ns,0.144075307,0.0000563,0.000101082,0.556689131,0.578141493,pos,ns,0.865261414,Nkiras2,Nkiras2_Exon,11,100625991,100626040,100626039,100626040,50,+,CAGGTCACCATCGTGGTCCTTGGCAACAAGTGTGACTTACAGGAGCAGCG,"Exon (Nkiras2-203/Nkiras2, exon 4 of 4)",11,100619244,100626799,7556,1,Nkiras2-203,6747,Nkiras2-203;Nkiras2-202;Nkiras2-201;Nkiras2-204;Nkiras2-206;Nkiras2-205;Zfp385c-201;Zfp385c-202;Zfp385c-203,Nkiras2;Nkiras2;Nkiras2;Nkiras2;Nkiras2;Nkiras2;Zfp385c;Zfp385c;Zfp385c,0;0;0;3071;0;0;24653;25644;31582,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,71966,ENSMUSG00000017837,conserved gene but different region,11,100625962,100626121,160,*,160,10,0.6125,0.667501043,0.0625,0.00000493,CpGisland,TRUE,NA,NRS
1286,cg18069537,-0.0000296,0.00000755,-3.925949829,0.00010649,loss,ns,-0.00000988,0.0000128,-0.770282279,0.441719074,neg,ns,-0.005131235,0.003757247,-1.365690014,0.17302633,neg,ns,0.761887803,-0.00000388,0.000129211,-0.030014011,0.976075193,neg,ns,0.930638256,Ptprg,Ptprg_threeUTR,14,12190683,12190732,12190731,12190732,50,-,AAATGTTTTCAGACTGCTCATTTCTATGTGGAAGACAGCAGTTCACCTCG,3' UTR,14,11553532,12242041,688510,1,Ptprg-201,637151,Ptprg-201;Ptprg-204;Ptprg-208;Ptprg-207;Ptprg-202,Ptprg;Ptprg;Ptprg;Ptprg;Ptprg,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,23,19270,ENSMUSG00000021745,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5740,cg17416451,-0.0000146,0.00000303,-4.811038387,0.00000235,loss,ns,0.00000396,0.00000514,0.770244378,0.441741519,pos,ns,-0.00214767,0.001506395,-1.425701269,0.154960736,neg,ns,0.809778329,-0.0000242,0.0000518,-0.467097421,0.640758311,neg,ns,0.952079551,Kctd15,Kctd15_Intron,7,34650501,34650550,34650549,34650550,50,+,CTCAGTAACGAGACACCTCTAAATTAGTGACTTCCTCAGCACCTAAGGCG,"Intron (Kctd15-202/Kctd15, intron 3 of 6)",7,34639014,34654398,15385,2,Kctd15-202,3848,Kctd15-202;Kctd15-203;Kctd15-201;Kctd15-206;Kctd15-208;Kctd15-204;Kctd15-205;Kctd15-207,Kctd15;Kctd15;Kctd15;Kctd15;Kctd15;Kctd15;Kctd15;Kctd15,0;0;0;-1757;0;0;0;6182,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,25,233107,ENSMUSG00000030499,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14805,cg09459920,-0.00000574,0.00000129,-4.430113757,0.0000131,loss,ns,-0.00000169,0.0000022,-0.770136382,0.441805477,neg,ns,0.001129462,0.000644317,1.752959402,0.080597438,pos,ns,1.093678764,-0.0000387,0.0000222,-1.748611367,0.081348033,neg,ns,0.96707091,Myo18a,Myo18a_Intron,11,77855648,77855697,77855696,77855697,50,+,CTCCCCGTTAACTAATAGCACATGAGCCCGGACATAAATTGTATTTGACG,"Intron (Myo18a-208/Myo18a, intron 40 of 41)",11,77763246,77865980,102735,1,Myo18a-208,92402,Myo18a-208;Myo18a-209;Myo18a-207;Myo18a-201;Myo18a-203;Myo18a-222;Myo18a-223;Myo18a-211;Myo18a-205;Myo18a-210;Myo18a-224;Myo18a-202;Myo18a-220;Myo18a-221;Myo18a-214;Myo18a-212;Myo18a-215;Myo18a-216,Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a,0;0;0;0;0;0;0;0;0;0;0;0;0;0;6197;4992;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,18,360013,ENSMUSG00000000631,conserved gene and region,11,77855571,77855712,142,*,142,10,0.492957747,1.183333333,0.070422535,0.00000171,CpGisland,TRUE,U10,Tr-S
24632,cg19245820,0.00000316,0.00000359,0.879601857,0.379756365,gain,ns,0.00000469,0.0000061,0.770059835,0.441850813,pos,ns,-0.002368869,0.00178615,-1.326243023,0.18573549,neg,ns,0.731105104,0.0000977,0.0000614,1.590873143,0.112657343,pos,ns,0.021701171,Gm43631,Gm43631_Intergenic_downstream,6,127330254,127330303,127330254,127330255,50,-,CGAAAGCTGACTCACATTTAAAGGCTTGCCCGAAGTGGTCATGCCCCTCT,Distal Intergenic,6,127367947,127368479,533,2,Gm43631-201,38225,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3629,cg26845838,0.000024,0.00000277,8.67431154,2.38E-16,gain,yes,0.00000362,0.0000047,0.769949643,0.441916081,pos,ns,0.001787228,0.001377961,1.297009461,0.195592419,pos,ns,0.708647981,-0.0000131,0.0000474,-0.276715439,0.782183024,neg,ns,0.069045558,Mboat2,Mboat2_fiveUTR,12,24831685,24831734,24831685,24831686,50,-,CGCCGAGGCCCGGCCATGGCCACCACCAGCACCACGGGCTCCACCCTGCT,Promoter (<=1kb),12,24830879,24939302,108424,1,Mboat2-205,806,Mboat2-205;Mboat2-204;Mboat2-203;Mboat2-201;Mboat2-202;Mboat2-206,Mboat2;Mboat2;Mboat2;Mboat2;Mboat2;Mboat2,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,3,67216,ENSMUSG00000020646,conserved gene and region,12,24831110,24832174,1065,*,1065,127,0.74741784,0.856244817,0.119248826,7.44E-107,CpGisland,TRUE,NA,NRS
24975,cg01253880,-0.00000902,0.00000805,-1.120468613,0.263381405,loss,ns,0.0000105,0.0000137,0.769943144,0.441919931,pos,ns,-0.001292691,0.004006587,-0.322641528,0.747184236,neg,ns,0.1265723,-0.0000282,0.000137786,-0.204665045,0.837968142,neg,ns,0.838683025,Pum1,Pum1_Exon,4,130762768,130762817,130762816,130762817,50,+,GGCAGTGGAAGATACATCTCTGCTGCTCCAGGCGCTGAAGCCAAGTACCG,"Exon (Pum1-201/Pum1, exon 15 of 22)",4,130663321,130781564,118244,1,Pum1-201,99447,Pum1-201;Pum1-204;Pum1-205;Pum1-203;Pum1-202,Pum1;Pum1;Pum1;Pum1;Pum1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,8,80912,ENSMUSG00000028580,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7534,cg19078113,0.00000689,0.00000336,2.051753109,0.041033453,gain,ns,-0.00000439,0.00000571,-0.769937742,0.44192313,neg,ns,-0.002615013,0.001671478,-1.564491826,0.118722325,neg,ns,0.925467607,-0.0000174,0.0000575,-0.303478069,0.761729131,neg,ns,0.849594731,Fam214b,Fam214b_Exon,4,43036594,43036643,43036594,43036595,50,+,CGGGGGATGTCGCCCCCCCTGCTGGGCTGTAGCCCATGAGCAGGCCACCC,"Exon (Fam214b-204/Fam214b, exon 3 of 9)",4,43032414,43040288,7875,2,Fam214b-204,3645,Fam214b-204;Fam214b-205;Fam214b-202;Fam214b-203;Fam214b-201;Fam214b-207;Fam214b-210;Fam214b-206;Fam214b-209;Fam214b-208;Stoml2-201,Fam214b;Fam214b;Fam214b;Fam214b;Fam214b;Fam214b;Fam214b;Fam214b;Fam214b;Fam214b;Stoml2,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,5,230088,ENSMUSG00000036002,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
17829,cg22123308,0.0000816,0.0000324,2.521946181,0.012171485,gain,ns,-0.0000423,0.000055,-0.769932039,0.441926508,neg,ns,0.029670176,0.016109597,1.841770189,0.066463885,pos,ns,1.177414274,-0.001144816,0.000554008,-2.066425911,0.039618529,neg,ns,0.615359035,Plscr5,Plscr5_Intron,9,91959772,91959821,91959820,91959821,50,+,TTTGCTTAAAGTGATTGATGTAGAATTTTACTGCCATCCAATGGCAGCCG,"Intron (Gm31409-201/Gm31409-201, intron 1 of 4)",9,92192936,92209772,16837,1,Plscr5-201,-233115,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,100504689,ENSMUSG00000095654,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22662,cg25226813,0.0000124,0.00000323,3.842222376,0.000147898,gain,ns,-0.00000422,0.00000548,-0.769841809,0.441979957,neg,ns,-0.001371215,0.001606116,-0.853745986,0.393904962,neg,ns,0.404608548,0.000142664,0.0000552,2.58289809,0.010255479,pos,ns,0.930889003,BC052040,BC052040_Intron,2,115643871,115643920,115643871,115643872,50,-,CGATTTAATCAAGAAAGAGATTAAAGTGGATGTGTGTTATTTTCAACTTC,"Intron (BC052040-203/BC052040, intron 5 of 10)",2,115581716,115778768,197053,1,BC052040-203,62155,BC052040-203;BC052040-201;BC052040-202,BC052040;BC052040;BC052040,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,37,49,399568,ENSMUSG00000040282,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7620,cg12837065,-0.0000422,0.0000141,-2.999098414,0.002927169,loss,ns,-0.0000184,0.0000239,-0.769775663,0.442019142,neg,ns,0.058118684,0.006998626,8.304299742,3.15E-15,pos,yes,14.50130217,-0.001273225,0.000240682,-5.290067364,0.000000232,neg,yes,0.745260233,Zbtb20,Zbtb20_Intron,16,43502732,43502781,43502732,43502733,50,-,CGGCATCTGACTGTACCTGTCTTGTTCTCTGCAGCATCTGTCTGCTACAC,"Intron (Zbtb20-211/Zbtb20, intron 4 of 4)",16,42907542,43569781,662240,1,Zbtb20-211,595190,Zbtb20-211;Zbtb20-217;Zbtb20-204;Zbtb20-215;Zbtb20-201;Zbtb20-203;Zbtb20-214;Zbtb20-213;Zbtb20-219;Zbtb20-216;Zbtb20-208;Zbtb20-207;Zbtb20-220;Zbtb20-206,Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,98,56490,ENSMUSG00000022708,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
429,cg18878759,0.0000217,0.0000044,4.939563803,0.00000128,gain,yes,-0.00000575,0.00000747,-0.76973954,0.442040542,neg,ns,-0.001799061,0.00218775,-0.822333731,0.411519042,neg,ns,0.385610064,0.000113766,0.0000752,1.512107607,0.131525222,pos,ns,0.913334283,Zdhhc14,Zdhhc14_Exon,17,5752694,5752743,5752694,5752695,50,+,CGACCAAGACCAGTGCATTCAGAGCACCAAATTCGTTTTGCAGGCTGCAG,"Exon (Zdhhc14-201/Zdhhc14, exon 9 of 9)",17,5492557,5753811,261255,1,Zdhhc14-201,260137,Zdhhc14-201,Zdhhc14,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,8,224454,ENSMUSG00000034265,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23993,cg15168457,-0.00000218,0.00000131,-1.669387079,0.096050169,loss,ns,0.00000171,0.00000222,0.769667485,0.442083231,pos,ns,0.001912035,0.000650362,2.939956485,0.003529411,pos,ns,2.452297799,-0.0000369,0.0000224,-1.650710727,0.099810352,neg,ns,0.966274536,Atxn2,Atxn2_Exon,5,121781300,121781349,121781348,121781349,50,+,TTATACTTTCCTTCATATCATTTGTTCTGTCAGGTGTTCCCTGGCCATCG,"Exon (Atxn2-201/Atxn2, exon 10 of 25)",5,121711609,121814950,103342,1,Atxn2-201,69691,Atxn2-201;Atxn2-220;Atxn2-209;Atxn2-208;Atxn2-219;Atxn2-214;Atxn2-202,Atxn2;Atxn2;Atxn2;Atxn2;Atxn2;Atxn2;Atxn2,0;0;0;0;0;0;-3725,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,16,20239,ENSMUSG00000042605,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4466,cg12676910,-0.0000021,0.00000145,-1.448988586,0.148351549,loss,ns,-0.00000189,0.00000246,-0.769512096,0.442175299,neg,ns,-0.000513714,0.000720004,-0.713487283,0.476081065,neg,ns,0.322319091,-0.0000376,0.0000248,-1.520263386,0.129464059,neg,ns,0.026129393,Actn4,Actn4_Exon,7,28962023,28962072,28962023,28962024,50,-,CGCTGCTGCTTCTCCCAGGCCGGGTCCAGCAGCAGGTCCCGGTCCCAGTC,Promoter (<=1kb),7,28893248,28962340,69093,2,Actn4-201,268,Actn4-201;Actn4-211;Actn4-202,Actn4;Actn4;Actn4,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,9,60595,ENSMUSG00000054808,conserved gene and region,7,28961911,28962538,628,*,628,76,0.713375796,0.987605272,0.121019108,9.44E-65,CpGisland,TRUE,U1,Pr-A
2948,cg27461599,0.00000373,0.00000433,0.862284446,0.389197555,gain,ns,-0.00000566,0.00000736,-0.769502968,0.442180708,neg,ns,-0.004560941,0.002155193,-2.116256444,0.035119788,neg,ns,1.454448113,0.000131909,0.0000741,1.77973705,0.076098549,pos,ns,0.891786879,Gm11880,Gm11880_Intergenic_upstream,4,22134211,22134260,22134259,22134260,50,-,TGGGGTCCCAGCAGAGAAACAAACGTTAGACTTGAGCAAGCTGGTGCACG,Distal Intergenic,4,22117134,22117532,399,2,Gm11880-201,-16728,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,11,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6850,cg00918089,0.00000384,0.00000373,1.031271995,0.303217188,gain,ns,-0.00000487,0.00000633,-0.769425577,0.442226567,neg,ns,-0.004841382,0.001853998,-2.611320099,0.009458025,neg,ns,2.024199527,0.000197196,0.0000638,3.092847199,0.002162834,pos,ns,0.068626782,Etv1,Etv1_fiveUTR,12,38780530,38780579,38780578,38780579,50,+,TGCAAAGCAAGTCTCGTTGATCGCCATTGCTAGTTTTGCACACGTTTGCG,5' UTR,12,38779380,38866249,86870,1,Etv1-203,1150,Etv1-203;Etv1-201;Etv1-211;Etv1-207;Etv1-206;Etv1-205;Etv1-212;Etv1-208;Etv1-210;Etv1-204;Etv1-202,Etv1;Etv1;Etv1;Etv1;Etv1;Etv1;Etv1;Etv1;Etv1;Etv1;Etv1,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,8,10,14009,ENSMUSG00000004151,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
15308,cg06459870,-0.0000913,0.0000103,-8.872733184,5.81E-17,loss,yes,-0.0000135,0.0000175,-0.769359707,0.442265601,neg,ns,0.021295267,0.005121773,4.157792291,0.0000416,pos,ns,4.3805592,-0.001041581,0.000176137,-5.913457764,8.84E-09,neg,yes,0.717262958,Dazap1,Dazap1_Exon,10,80280916,80280965,80280916,80280917,50,+,CGTCGTTGGCTAGGTTTTGGATTTATTACTTTCGAGGACGAACAATCAGT,"Exon (Dazap1-207/Dazap1, exon 7 of 7)",10,80261486,80281005,19520,1,Dazap1-207,19430,Dazap1-207;Dazap1-203;Dazap1-202;Dazap1-201;Dazap1-205;Dazap1-204;Dazap1-206,Dazap1;Dazap1;Dazap1;Dazap1;Dazap1;Dazap1;Dazap1,0;0;0;0;15792;0;-1902,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,6,70248,ENSMUSG00000069565,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U5,En-Sd
6330,cg21715204,0.00000199,0.00000579,0.343462338,0.731483487,gain,ns,-0.00000757,0.00000984,-0.769286082,0.442309233,neg,ns,-0.008252678,0.002881527,-2.8639945,0.00446872,neg,ns,2.349816837,0.0000896,0.0000991,0.903966548,0.36671507,pos,ns,0.876540644,Pknox2,Pknox2_threeUTR,9,36909654,36909703,36909654,36909655,50,-,CGCATTATATTGGTGGCATGCTTGGGCAAGACTCCTCGTTTGTTCTTGGA,3' UTR,9,36890982,37083309,192328,2,Pknox2-207,173606,Pknox2-207;Pknox2-201;Pknox2-202;Pknox2-203;Pknox2-206,Pknox2;Pknox2;Pknox2;Pknox2;Pknox2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,47,208076,ENSMUSG00000035934,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2822,cg05387692,0.00000871,0.00000774,1.125838744,0.261104614,gain,ns,-0.0000101,0.0000131,-0.769192982,0.442364409,neg,ns,0.007778333,0.003851006,2.019818364,0.044262238,pos,ns,1.353966627,-0.000233404,0.000132436,-1.762392639,0.078988418,neg,ns,0.514959011,Comtd1,Comtd1_Intergenic_upstream,14,21903895,21903944,21903895,21903896,50,-,CGCAGGAATGTTTAATGTTCTCATTATTGGTTACGCTGTTGTGTATATTT,Distal Intergenic,14,21845855,21848977,3123,2,Comtd1-202,-54967,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,13,69156,ENSMUSG00000021773,mapped to different genes,14,21903863,21904078,216,*,216,12,0.532407407,0.786885246,0.055555556,0.00000131,CpGisland,TRUE,U9,En-Pp
27186,cg19266722,0.0000216,0.00000355,6.072685421,3.68E-09,gain,yes,-0.00000464,0.00000604,-0.769033684,0.442458828,neg,ns,0.004203814,0.001768671,2.376820179,0.018069406,pos,ns,1.743056121,-0.000182763,0.0000608,-3.004754236,0.002874817,neg,ns,0.063156725,Mafb,Mafb_Exon,2,160365816,160365865,160365864,160365865,50,+,CAGCCGGGACACCTCCTGCTTAAGCTGCTCCACCTGCTGAATGAGCTGCG,"Exon (Mafb-201/Mafb, exon 1 of 1)",2,160363703,160367065,3363,2,Mafb-201,1200,Mafb-201,Mafb,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,14,22,16658,ENSMUSG00000074622,conserved gene and region,2,160365864,160367635,1772,*,1772,185,0.687358917,0.886994873,0.104401806,2.50E-143,CpGisland,TRUE,U3,Pr-B
21336,cg22289282,-2.43E-08,0.00000464,-0.005234573,0.995826801,loss,ns,-0.00000606,0.00000788,-0.768987373,0.44248628,neg,ns,0.00241085,0.002309993,1.043661063,0.2974554,pos,ns,0.526578143,-0.000121026,0.0000794,-1.523476225,0.128659052,neg,ns,0.882736222,Lin7a,Lin7a_fiveUTR,10,107380211,107380260,107380211,107380212,50,-,CGCGTGTGTGTTTCAGGTATTCTCGTGTGTACACTGTAAGAGAATTTAGA,5' UTR,10,107271686,107421474,149789,1,Lin7a-201,108525,Lin7a-201;Lin7a-202;Lin7a-203,Lin7a;Lin7a;Lin7a,0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,4,108030,ENSMUSG00000019906,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4869,cg13015530,-0.00000654,0.00000267,-2.45310594,0.014713314,loss,ns,0.00000348,0.00000453,0.768888088,0.442545136,pos,ns,-0.001254774,0.001327609,-0.945138799,0.345324089,neg,ns,0.461773125,-0.00000826,0.0000457,-0.180830141,0.856619068,neg,ns,0.955442529,Cad,Cad_Exon,5,31069064,31069113,31069112,31069113,50,+,CCATCTCTGAGCATGTGGAGAATGCAGGTGTGCATTCAGGTGATGCGACG,"Exon (Cad-201/Cad, exon 22 of 44)",5,31054780,31078479,23700,1,Cad-201,14284,Cad-201;Cad-206;Cad-204;Cad-211;Cad-203;Cad-207;Cad-209;Cad-210;Cad-205;Cad-208;Cad-212,Cad;Cad;Cad;Cad;Cad;Cad;Cad;Cad;Cad;Cad;Cad,0;14253;0;0;0;7270;2769;-1243;-1356;-1442;-3196,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,69719,ENSMUSG00000013629,conserved gene and region,5,31068994,31069157,164,*,164,13,0.62195122,0.819684737,0.079268293,6.06E-09,CpGisland,TRUE,U10,Tr-S
25883,cg17524006,0.0000019,0.00000336,0.565320857,0.57226445,gain,ns,-0.00000438,0.0000057,-0.768660401,0.442680125,neg,ns,-0.003228818,0.001670122,-1.933282796,0.054111736,neg,ns,1.266708529,-0.00000408,0.0000574,-0.070997127,0.943445822,neg,ns,0.896330128,Frmpd3,Frmpd3_Exon,X,140362227,140362276,140362227,140362228,50,+,CGAGACCCTATATATGGCTTTGGCTTCGTGGCTGGCAGTGAGAGGCCTGT,"Exon (Frmpd3-203/Frmpd3, exon 2 of 15)",20,140342263,140435467,93205,1,Frmpd3-203,19964,Frmpd3-203,Frmpd3,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,10,245643,ENSMUSG00000042425,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24867,cg26437066,-0.00000665,0.00000239,-2.779518414,0.005776449,loss,ns,-0.00000312,0.00000407,-0.768567118,0.442735437,neg,ns,-0.000513043,0.001190988,-0.430770831,0.666934368,neg,ns,0.175916902,0.00000402,0.000041,0.098218497,0.921822271,pos,ns,0.950955088,Rnf19b,Rnf19b_Exon,4,129071894,129071943,129071894,129071895,50,+,CGGACCAAACACACTTCAGGTCTCAGTTATGGGCAAGAATCTGGACCAGG,"Exon (Rnf19b-206/Rnf19b, exon 2 of 9)",4,129058271,129084526,26256,1,Rnf19b-206,13623,Rnf19b-206;Rnf19b-201;Rnf19b-205;Rnf19b-202,Rnf19b;Rnf19b;Rnf19b;Rnf19b,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,75234,ENSMUSG00000028793,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27746,cg08014885,-0.000000629,0.00000154,-0.407729718,0.683753553,loss,ns,-0.00000202,0.00000262,-0.768518082,0.442764514,neg,ns,0.001170036,0.000768337,1.522816212,0.128824104,pos,ns,0.890002868,-0.0000356,0.0000264,-1.347102936,0.178930953,neg,ns,0.956405501,Wdr26,Wdr26_threeUTR,1,181177273,181177322,181177273,181177274,50,-,CGGGCAAGGCTAGAATCCATGAACCAAGCTGCAAAGATCTCAAGCTAAAT,3' UTR,1,181173228,181211978,38751,2,Wdr26-207,34656,Wdr26-207;Wdr26-209;Wdr26-208;Wdr26-201;Wdr26-204;Wdr26-202;Wdr26-205,Wdr26;Wdr26;Wdr26;Wdr26;Wdr26;Wdr26;Wdr26,0;0;0;0;0;6417;7074,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,7,226757,ENSMUSG00000038733,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9436,cg17414768,0.00000363,0.00000997,0.363843954,0.716222557,gain,ns,-0.000013,0.0000169,-0.768487074,0.442782902,neg,ns,0.010974956,0.004959886,2.212743411,0.027643718,pos,ns,1.55840354,-0.000717951,0.00017057,-4.209125942,0.0000336,neg,ns,0.133775463,Zbtb16,Zbtb16_Intron,9,48737644,48737693,48737692,48737693,50,-,CTCTCTGGAATGCTGGCAGAACATCCAGACCTGCCGGCAGGCCAGTGACG,"Intron (Zbtb16-201/Zbtb16, intron 3 of 6)",9,48654297,48835945,181649,2,Zbtb16-201,98252,Zbtb16-201;Zbtb16-202,Zbtb16;Zbtb16,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,37,235320,ENSMUSG00000066687,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
14319,cg05403103,-0.00000283,0.00000629,-0.450233772,0.652856583,loss,ns,-0.00000821,0.0000107,-0.768456765,0.442800875,neg,ns,-0.004814707,0.003130982,-1.537762273,0.125126788,neg,ns,0.902649705,0.000117196,0.000107674,1.088434117,0.277248961,pos,ns,0.642538653,Smg6,Smg6_threeUTR,11,75156269,75156318,75156269,75156270,50,+,CGGCTGCTGGAGAGCAGGAAGTACATCCTGGTGGTGCCCCTCATCGGTGA,3' UTR,11,74925823,75164448,238626,1,Smg6-201,230446,Smg6-201;Smg6-202;Smg6-206,Smg6;Smg6;Smg6,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,34,103677,ENSMUSG00000038290,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13209,cg22777952,0.0000412,0.00000503,8.200984899,6.41E-15,gain,yes,-0.00000656,0.00000854,-0.768412354,0.442827212,neg,ns,0.006618921,0.002501211,2.646286815,0.008553448,pos,ns,2.067858797,-0.00013605,0.000086,-1.581669604,0.114744711,neg,ns,0.077153535,Foxb1,Foxb1_fiveUTR,9,69760910,69760959,69760958,69760959,50,-,GTAGCGGCGCTTCATTAATGTGCCACTTCTTAGCTATCATATGACAATCG,Promoter (<=1kb),9,69757710,69760940,3231,2,Foxb1-201,0,Foxb1-201,Foxb1,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,21,64290,ENSMUSG00000059246,conserved gene but different region,9,69760569,69760991,423,*,423,38,0.643026005,0.879754803,0.089834515,2.59E-27,CpGisland,TRUE,U13,Hc-P
3113,cg06955758,-0.000159085,0.0000199,-8.003441275,2.45E-14,loss,yes,0.0000259,0.0000338,0.768351108,0.442863534,pos,ns,0.061872628,0.009893022,6.254168876,1.32E-09,pos,ns,8.878171377,-0.00303925,0.00034022,-8.933185553,3.76E-17,neg,yes,0.478399279,Lrmda,Lrmda_Intron,14,22783474,22783523,22783474,22783475,50,+,CGCTGGTGGAGGTCTATGATAACAAAGACTTTGTGATTTATGGCTTGCTG,"Intron (Lrmda-201/Lrmda, intron 5 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,763762,Lrmda-201;Lrmda-204;Lrmda-206,Lrmda;Lrmda;Lrmda,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9864,cg00399596,0.0000127,0.00000298,4.241825814,0.0000293,gain,ns,0.00000389,0.00000507,0.768239839,0.442929527,pos,ns,0.003703549,0.001484925,2.494098724,0.013148416,pos,ns,1.881126547,-0.0000459,0.0000511,-0.898520968,0.369605221,neg,ns,0.031063287,Nfe2l3,Nfe2l3_Intergenic_upstream,6,51270894,51270943,51270942,51270943,50,-,TCCCTTCCATCTTGACTTTTGCCGACGTGGAAATTTTGGGTTTGGAGACG,Distal Intergenic,6,51432670,51458768,26099,1,Nfe2l3-201,-161776,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,5,18025,ENSMUSG00000029832,mapped to different genes,6,51270266,51271400,1135,*,1135,96,0.676651982,0.740217391,0.084581498,2.21E-65,CpGisland,TRUE,U1,Pr-A
26882,cg14524396,0.00000366,0.00000351,1.043637734,0.29746618,gain,ns,-0.00000458,0.00000596,-0.768176796,0.442966919,neg,ns,-0.00012212,0.001747246,-0.069893015,0.944323877,neg,ns,0.024879029,-0.0000539,0.0000601,-0.89633172,0.370771127,neg,ns,0.941436292,Cacna1e,Cacna1e_Exon,1,154436497,154436546,154436497,154436498,50,-,CGGAAGAGCTTCAGAAAGCTCATATTGAAGCCACTGGTGTTCACCAGCTG,"Exon (Cacna1e-203/Cacna1e, exon 34 of 47)",1,154390731,154726356,335626,2,Cacna1e-203,289810,Cacna1e-203;Cacna1e-201;Cacna1e-207,Cacna1e;Cacna1e;Cacna1e,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,19,12290,ENSMUSG00000004110,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
583,cg14946072,0.0000171,0.00000253,6.760642705,6.83E-11,gain,yes,-0.0000033,0.0000043,-0.76799774,0.443073133,neg,ns,0.003115191,0.001260713,2.470975681,0.014011915,pos,ns,1.85350252,-0.0000831,0.0000434,-1.917323863,0.056115652,neg,ns,0.050887135,Rbfox1,Rbfox1_Intron,16,7039984,7040033,7040032,7040033,50,+,CCCCAGCTTTCGTGTGCCTTGACTTTTATGTACTTACAGCAGGTAAGGCG,"Intron (Rbfox1-205/Rbfox1, intron 4 of 11)",16,5885355,7353045,1467691,1,Rbfox1-205,1154629,Rbfox1-205;Rbfox1-201;Rbfox1-202,Rbfox1;Rbfox1;Rbfox1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,35,268859,ENSMUSG00000008658,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9067,cg06554892,0.0000237,0.00000363,6.525980121,2.75E-10,gain,yes,0.00000474,0.00000617,0.767979705,0.443083832,pos,ns,0.009179831,0.001807533,5.078652738,0.000000657,pos,ns,6.182157725,-0.000220008,0.0000622,-3.53933009,0.00046261,neg,ns,0.097859982,Cnnm2,Cnnm2_Exon,19,46762697,46762746,46762697,46762698,50,-,CGCAGGCAGGGCAACTACCTGCTGTGCTCACTGCTGCTGGGCAACGTGCT,"Exon (Cnnm2-202/Cnnm2, exon 1 of 8)",19,46761596,46880192,118597,1,Cnnm2-202,1101,Cnnm2-202;Cnnm2-201;Cnnm2-203,Cnnm2;Cnnm2;Cnnm2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,8,94219,ENSMUSG00000064105,conserved gene and region,19,46762560,46762882,323,*,323,24,0.622291022,0.767524753,0.074303406,1.81E-15,CpGisland,TRUE,NA,NRS
14563,cg10942308,0.000243003,0.0000412,5.893258221,9.87E-09,gain,yes,-0.0000538,0.0000701,-0.767971371,0.443088776,neg,ns,0.040400626,0.020522625,1.96858956,0.049890909,pos,ns,1.301978586,-0.004293682,0.000705771,-6.083672986,3.46E-09,neg,yes,0.402369029,Tsc22d1,Tsc22d1_Intron,14,76505841,76505890,76505841,76505842,50,-,CGCCTGTGGCTCTTCTCACGGGATTCTCTGCCCACTGTTGCTAGGCAAAC,"Intron (Tsc22d1-204/Tsc22d1, intron 4 of 4)",14,76414961,76507762,92802,1,Tsc22d1-204,90880,Tsc22d1-204;Tsc22d1-202;Tsc22d1-207;Tsc22d1-208;Tsc22d1-203;Tsc22d1-214;Tsc22d1-201;Tsc22d1-206;Tsc22d1-205,Tsc22d1;Tsc22d1;Tsc22d1;Tsc22d1;Tsc22d1;Tsc22d1;Tsc22d1;Tsc22d1;Tsc22d1,0;0;0;0;0;0;0;1311;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,Intron,6,10,21807,ENSMUSG00000022010,conserved gene and region,14,76505732,76505860,129,*,129,9,0.519379845,1.040322581,0.069767442,0.00000752,CpGisland,TRUE,U1,Pr-A
5505,cg03203870,-0.00000107,0.00000373,-0.286619184,0.774595387,loss,ns,0.00000486,0.00000633,0.767792015,0.443195184,pos,ns,-0.000177891,0.001855111,-0.095892376,0.923668008,neg,ns,0.034484098,-0.0000105,0.0000638,-0.164967617,0.869076991,neg,ns,0.90762416,Pbx3,Pbx3_Intergenic_downstream,2,34135571,34135620,34135619,34135620,50,-,TCCGTCCTGCCCTGATTAATTAGCAGGGTTAATTATGACGGCTGCTGCCG,Distal Intergenic,2,34172873,34288852,115980,2,Pbx3-210,153281,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,82,18516,ENSMUSG00000038718,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8752,cg09906680,0.00000184,0.00000331,0.554804588,0.579428397,gain,ns,-0.00000432,0.00000562,-0.767695327,0.443252553,neg,ns,-0.000285176,0.001647619,-0.173083536,0.862698722,neg,ns,0.064140845,0.00000741,0.0000567,0.13071651,0.896084357,pos,ns,0.861250586,Dscaml1,Dscaml1_Exon,9,45702539,45702588,45702587,45702588,50,-,CCCCCAGAGCTGGAGATCCGGGAGGTGAAGGCCCGGAGCATGAACCTGCG,"Exon (Dscaml1-211/Dscaml1, exon 14 of 33)",9,45430291,45753262,322972,1,Dscaml1-211,272248,Dscaml1-211;Dscaml1-201;Dscaml1-210;Dscaml1-207,Dscaml1;Dscaml1;Dscaml1;Dscaml1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,32,114873,ENSMUSG00000032087,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15451,cg06205353,0.00000834,0.00000531,1.570360994,0.117351244,gain,ns,-0.00000693,0.00000902,-0.767618077,0.443298392,neg,ns,-0.002137443,0.002642984,-0.80872359,0.419294373,neg,ns,0.377480966,-0.000321217,0.0000909,-3.534048785,0.000471585,neg,ns,0.749319331,Atp9b,Atp9b_Intergenic_upstream,18,80945171,80945220,80945219,80945220,50,+,AATTGCCTGGAATAAATTCAGATCACCCTTTGATTCTGTCCACTGAGACG,Distal Intergenic,18,80890067,80934060,43994,2,Atp9b-214,-11111,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,4,50771,ENSMUSG00000024566,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10715,cg14534239,-0.0000254,0.00000363,-7.011066789,1.49E-11,loss,yes,0.00000473,0.00000617,0.767598169,0.443310206,pos,ns,-0.002940438,0.001806486,-1.627711668,0.104601931,neg,ns,0.9804603,-0.0000201,0.0000621,-0.324071378,0.746102537,neg,ns,0.958570105,Sf3b1,Sf3b1_Exon,1,55003444,55003493,55003444,55003445,50,-,CGAGCTGGAGTTCGAATAGGAACATAACCAGCTGGAGGAGGAAGTACCTA,"Exon (Sf3b1-201/Sf3b1, exon 10 of 25)",1,54985169,55027481,42313,2,Sf3b1-201,23988,Sf3b1-201;Sf3b1-203;Sf3b1-205,Sf3b1;Sf3b1;Sf3b1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,7,81898,ENSMUSG00000025982,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1407,cg26499416,-0.00000191,0.00000162,-1.177282402,0.23998589,loss,ns,0.00000211,0.00000275,0.767594999,0.443312087,pos,ns,0.000385585,0.000806268,0.478234372,0.63282048,pos,ns,0.198719474,-0.0000225,0.0000277,-0.812923171,0.416885983,neg,ns,0.966775892,Ttc39c,Ttc39c_Exon,18,12695558,12695607,12695558,12695559,50,-,CGAAAGTAAGGACATGAAGGCCCCTTTAGCTACGTGAGTAGCTGTATTGC,"Exon (Ttc39c-208/Ttc39c, exon 5 of 8)",18,12599896,12725017,125122,1,Ttc39c-208,95662,Ttc39c-208;Ttc39c-205;Ttc39c-204;Ttc39c-207;Ttc39c-201;Ttc39c-206,Ttc39c;Ttc39c;Ttc39c;Ttc39c;Ttc39c;Ttc39c,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,72747,ENSMUSG00000024424,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19227,cg19608430,-0.0000248,0.00000506,-4.893846525,0.00000159,loss,yes,0.0000066,0.0000086,0.767592471,0.443313587,pos,ns,-0.005534705,0.002520501,-2.195875172,0.028841483,neg,ns,1.539982413,-0.00000379,0.0000867,-0.043742141,0.965138109,neg,ns,0.878106681,Msl1,Msl1_Exon,11,98800278,98800327,98800278,98800279,50,+,CGTACCTTTCCACCACAGAAATGTATTTGTGTCGTTGGCACCAGCCTCCC,"Exon (Msl1-201/Msl1, exon 3 of 9)",11,98795516,98807859,12344,1,Msl1-201,4762,Casc3-201;Msl1-201;Msl1-203;Msl1-204;Msl1-202;Msl1-205;Msl1-206,Casc3;Msl1;Msl1;Msl1;Msl1;Msl1;Msl1,-4578;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,13,74026,ENSMUSG00000052915,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23424,cg19670633,-0.000035,0.00000674,-5.198456386,0.000000365,loss,yes,0.00000879,0.0000115,0.767580784,0.443320522,pos,ns,-0.000723931,0.003355277,-0.215759028,0.829317479,neg,ns,0.081279181,-0.000223987,0.000115388,-1.941170246,0.053143705,neg,ns,0.899047015,Gm5672,Gm5672_Intron,14,118366794,118366843,118366794,118366795,50,-,CGCTGCTAAAAGCCTGTTCTGTGACTGCAGATTAATGAAGATCTGCATTG,"Intron (Gm26791-201/Gm26791-201, intron 1 of 1)",14,118375261,118376194,934,2,Gm5672-201,9400,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,9,435422,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23304,cg05320843,0.000000395,0.00000116,0.340418138,0.733772226,gain,ns,0.00000151,0.00000197,0.767527575,0.443352098,pos,ns,0.00072614,0.00057804,1.256210393,0.209985561,pos,ns,0.677810567,-0.00000399,0.0000199,-0.200623027,0.841124909,neg,ns,0.979491664,Eri3,Eri3_Intron,4,117665943,117665992,117665991,117665992,50,-,GCGCTTAATAAACACTTTATGAGGATTTTTTTAAAAACATCTTCGGTCCG,"Intron (Eri3-201/Eri3, intron 8 of 8)",4,117550365,117674297,123933,1,Eri3-201,115578,Eri3-201;Eri3-206;Eri3-203,Eri3;Eri3;Eri3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,82,97,140546,ENSMUSG00000033423,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5538,cg12506731,-0.0000217,0.0000048,-4.530203106,0.00000842,loss,ns,-0.00000625,0.00000815,-0.767425713,0.443412549,neg,ns,0.001378147,0.002387746,0.577175067,0.564240113,pos,ns,0.248536042,-0.000134675,0.0000821,-1.640094984,0.101999697,neg,ns,0.929443831,Hdac9,Hdac9_Exon,12,34220925,34220974,34220925,34220926,50,+,CGGTAATTGCAACTGAATTAAAAAAGCAGAACCCCCTGCGGAATAGAGAA,"Exon (Hdac9-205/Hdac9, exon 18 of 25)",12,34047580,34528328,480749,2,Hdac9-205,307354,Hdac9-205;Hdac9-204;Hdac9-206;Hdac9-210;Hdac9-207,Hdac9;Hdac9;Hdac9;Hdac9;Hdac9,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,31,79221,ENSMUSG00000004698,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6753,cg20677676,0.0000103,0.00000177,5.820088479,1.47E-08,gain,yes,0.00000231,0.00000301,0.767251642,0.443515865,pos,ns,0.003743012,0.00088208,4.24339273,0.0000291,pos,ns,4.535887751,-0.0000402,0.0000303,-1.324333873,0.186367734,neg,ns,0.057892765,Lhx2,Lhx2_Intron,2,38347898,38347947,38347946,38347947,50,+,TATCAGCGTCAACTATCGCTTCCTCTGCTGGTACACACGGCCTGATGCCG,"Intron (Lhx2-203/Lhx2, intron 1 of 4)",2,38339281,38369199,29919,1,Lhx2-203,8617,Lhx2-203;Lhx2-204;Lhx2-202;Lhx2-201;Lhx2-207;Lhx2-205,Lhx2;Lhx2;Lhx2;Lhx2;Lhx2;Lhx2,0;0;0;0;-3821;-4585,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,33,16870,ENSMUSG00000000247,mapped to different genes,2,38347822,38348178,357,*,357,27,0.518207283,1.126841244,0.075630252,1.55E-17,CpGisland,TRUE,U3,Pr-B
1656,cg18193137,-0.0000132,0.00000326,-4.050539493,0.0000646,loss,ns,0.00000425,0.00000554,0.767206532,0.443542642,pos,ns,0.001719101,0.001622268,1.059690373,0.290110436,pos,ns,0.537436649,-0.000201374,0.0000558,-3.609518843,0.000357576,neg,ns,0.935974252,Zfp521,Zfp521_Intergenic_upstream,18,14091207,14091256,14091207,14091208,50,+,CGATGTAGATTCTGACAGATGCCAATTTATGGTCCAATTTATGTCTTGAC,Distal Intergenic,18,13687013,13972787,285775,2,Zfp521-201,-118420,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,81,225207,ENSMUSG00000024420,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10738,cg14182735,-0.000011,0.00000655,-1.687070655,0.092595687,loss,ns,0.00000853,0.0000111,0.767159028,0.44357084,pos,ns,-0.004173365,0.003259267,-1.280461009,0.201340282,neg,ns,0.696069327,0.0000813,0.000112086,0.725743589,0.468543508,pos,ns,0.877619445,Galnt13,Galnt13_Exon,2,55073940,55073989,55073940,55073941,50,+,CGCAAGGAAAATGAAAAAGTGGGTATATTCAACTGTCATGGTATGGGAGG,"Exon (Galnt13-204/Galnt13, exon 10 of 12)",2,54436317,55118309,681993,1,Galnt13-204,637623,Galnt13-204;Galnt13-202;Galnt13-203;Galnt13-201,Galnt13;Galnt13;Galnt13;Galnt13,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,271786,ENSMUSG00000060988,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20475,cg18119915,0.0000255,0.00000449,5.680351251,0.000000031,gain,yes,-0.00000585,0.00000762,-0.767132592,0.443586532,neg,ns,0.006233735,0.002233777,2.790670228,0.005585923,pos,ns,2.252905081,-0.00015048,0.0000768,-1.95887344,0.051023821,neg,ns,0.073204432,Hoxc4,Hoxc4_Intergenic_downstream,15,103061692,103061741,103061692,103061693,50,+,CGTGATTTATGACTTCAATCTTGGTTCACCAAGAGTTCACATGGCTTTCG,Distal Intergenic,15,103034395,103036852,2458,1,Hoxc4-201,27297,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,32,91,15423,ENSMUSG00000075394,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
25016,cg21989707,0.0000507,0.00000495,10.25191126,1.98E-21,gain,yes,-0.00000645,0.00000841,-0.767124943,0.443591073,neg,ns,0.002221921,0.002462783,0.902199134,0.36765154,pos,ns,0.43456361,0.000128786,0.0000847,1.520582853,0.129383838,pos,ns,0.146054284,Fgfr2,Fgfr2_Intron,7,131542597,131542646,131542645,131542646,50,-,ACTTGGATGACATTTTGATTTCATCATTAGCATCCGGCGCCGGATTGACG,"Intron (Fgfr2-217/Fgfr2, intron 2 of 6)",7,130162451,133123350,2960900,2,Fgfr2-217,1580704,Fgfr2-217;Hmx3-201,Fgfr2;Hmx3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,58,79,14183,ENSMUSG00000030849,mapped to different genes,7,131542631,131543412,782,*,782,92,0.739130435,0.916717635,0.117647059,5.66E-77,CpGisland,TRUE,U3,Pr-B
25215,cg18465972,0.00000531,0.0000019,2.79083172,0.005583206,gain,ns,0.00000248,0.00000323,0.767002643,0.443663677,pos,ns,0.006460236,0.000947555,6.817797313,4.84E-11,pos,yes,10.31538619,-0.000121592,0.0000326,-3.731379243,0.000226462,neg,ns,0.041728855,Arid1a,Arid1a_Intron,4,133729881,133729930,133729929,133729930,50,-,TGGCTGCCTGGGAGGACTTGGACTGGCGCCTGATAACCCAGAAAGAGCCG,"Intron (Arid1a-202/Arid1a, intron 1 of 19)",4,133679008,133753611,74604,2,Arid1a-202,23681,Arid1a-202;Arid1a-205;Arid1a-201;Arid1a-203,Arid1a;Arid1a;Arid1a;Arid1a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,31,93760,ENSMUSG00000007880,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U5,En-Sd
11979,cg08362592,-0.00000181,0.00000681,-0.265361807,0.790907129,loss,ns,0.00000887,0.0000116,0.766653339,0.44387108,pos,ns,0.004621273,0.003387664,1.364147351,0.173510753,pos,ns,0.760673606,-0.000147878,0.000116501,-1.26932585,0.20527699,neg,ns,0.85713869,Gm19208,Gm19208_Intergenic_downstream,9,61855906,61855955,61855906,61855907,50,-,CGCTGTTCACATCAATATCACACAGGGACGCTGACACAGGGCCATCTGTC,Distal Intergenic,9,61851704,61852615,912,1,Gm19208-201,4251,Gm19208-201,Gm19208,4202,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,3,100418429,NA,mapped to different genes,9,61855791,61855907,117,*,117,10,0.58974359,1,0.085470086,0.000000285,CpGisland,TRUE,U11,Tr-P
7999,cg20545104,0.000147284,0.0000108,13.59468401,2.45E-33,gain,yes,-0.0000141,0.0000184,-0.766450888,0.443991313,neg,ns,0.011136031,0.005392165,2.065224284,0.039732819,pos,ns,1.40085062,-0.0000435,0.000185436,-0.234484669,0.814763529,neg,ns,0.083824567,Pax2,Pax2_Intergenic_upstream,19,44675031,44675080,44675079,44675080,50,+,CCTGGCATCTTTACTAGTTGCAGCCAATTTCGGCGATTTCGGCGGTGACG,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-80965,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,19,44675061,44675159,99,*,99,13,0.696969697,1.086993243,0.131313131,7.58E-12,CpGisland,TRUE,U13,Hc-P
20336,cg08991395,0.00000779,0.00000326,2.393226592,0.017295538,gain,ns,-0.00000424,0.00000553,-0.766368316,0.444040357,neg,ns,-0.003718928,0.00162077,-2.294544694,0.022427332,neg,ns,1.649222381,0.000122427,0.0000557,2.196474831,0.028798145,pos,ns,0.055338529,Hoxc5,Hoxc5_Intron,15,103009517,103009566,103009517,103009518,50,-,CGTCCCTATAACCATCTAGTTCCGAGTACAAACTGGAGACAGAAATAAAT,"Intron (Hoxc5-202/Hoxc5, intron 1 of 1)",15,102967443,103015676,48234,1,Hoxc5-202,42074,Hoxc5-202;Hoxc5-201;Hoxc6-202;Hoxc6-203;Hoxc6-201,Hoxc5;Hoxc5;Hoxc6;Hoxc6;Hoxc6,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,46,134,15424,ENSMUSG00000022485,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
27147,cg02531138,0.0000125,0.00000639,1.960330946,0.050852506,gain,ns,-0.00000832,0.0000109,-0.766354217,0.444048731,neg,ns,-0.004045685,0.00318153,-1.271616121,0.204462732,neg,ns,0.68938584,0.000131471,0.000109413,1.201604471,0.230433977,pos,ns,0.842247395,Gm14219,Gm14219_Intergenic_upstream,2,159481508,159481557,159481556,159481557,50,+,AACTTTCTGTTCATCTGAATCTCAGTTTATTTTAAAACAGAACCATAACG,Distal Intergenic,2,159456170,159456457,288,2,Gm14219-201,-25051,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,5,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23893,cg27593746,-0.00000604,0.00000297,-2.034657142,0.042736095,loss,ns,-0.00000387,0.00000505,-0.766333791,0.444060864,neg,ns,-0.001537166,0.001478614,-1.039599052,0.299336363,neg,ns,0.523840523,0.00000833,0.0000508,0.163825073,0.869975609,pos,ns,0.945543792,Mical3,Mical3_Intron,6,120937550,120937599,120937550,120937551,50,+,CGTTACCTTCCTGGACACAGCAAGGGCAGAAGGAGAGAGGTCTACGTCGT,"Intron (Mical3-202/Mical3, intron 13 of 15)",6,120931707,121003152,71446,2,Mical3-202,65553,Mical3-202;Mical3-216;Mical3-221;Mical3-222;Mical3-223;Mical3-220;Mical3-206;Mical3-203,Mical3;Mical3;Mical3;Mical3;Mical3;Mical3;Mical3;Mical3,0;0;0;0;0;0;0;-2015,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,5,194401,ENSMUSG00000051586,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21131,cg24972944,-0.00000151,0.00000274,-0.55165647,0.58158117,loss,ns,0.00000357,0.00000466,0.766307552,0.444076449,pos,ns,-0.000994619,0.001363951,-0.729218895,0.466418358,neg,ns,0.331224365,0.0000164,0.0000469,0.350015156,0.726565007,pos,ns,0.865091819,Rrp9,Rrp9_Exon,9,106483832,106483881,106483832,106483833,50,-,CGTGTGTGGAAGATCCCCGAGGAGTCCCAGCTTGTCTTCTATGGCCACCA,Promoter (<=1kb),9,106483854,106485422,1569,1,Rrp9-207,0,Rrp9-202;Rrp9-201;Rrp9-203;Rrp9-208;Rrp9-206;Rrp9-207;Rrp9-205,Rrp9;Rrp9;Rrp9;Rrp9;Rrp9;Rrp9;Rrp9,7869;0;0;0;3032;0;-583,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,27966,ENSMUSG00000041506,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20409,cg15436708,0.0000129,0.00000279,4.634391083,0.00000528,gain,ns,0.00000363,0.00000473,0.766303243,0.444079009,pos,ns,0.004219634,0.001386553,3.043254353,0.002540663,pos,ns,2.595053013,-0.000130197,0.0000477,-2.730442112,0.0066868,neg,ns,0.023391989,Hoxc4,Hoxc4_Intron,15,103032912,103032961,103032960,103032961,50,-,TTTACAGCCCTATAAAAGCTGTAGCGACGAGGCAAGCGCTCCTACCACCG,"Intron (Hoxc4-202/Hoxc4, intron 1 of 3)",15,103018934,103036405,17472,1,Hoxc4-202,13978,Hoxc4-202;Hoxc4-201,Hoxc4;Hoxc4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,91,15423,ENSMUSG00000075394,conserved gene and region,15,103032736,103032961,226,*,226,19,0.517699115,1.262198707,0.084070797,2.37E-13,CpGisland,TRUE,U13,Hc-P
12100,cg04267215,-0.00000378,0.00000224,-1.687363092,0.092539414,loss,ns,0.00000291,0.0000038,0.766269167,0.44409925,pos,ns,0.001038727,0.001113809,0.932589472,0.351757734,pos,ns,0.453756345,-0.0000919,0.0000383,-2.399335697,0.017014932,neg,ns,0.942023422,Gm11481,Gm11481_Intergenic_upstream,4,62884491,62884540,62884491,62884492,50,+,CGTAGTTTCAGGAGCCACAGATAATAAGACCTAATTTATAATTAGGGCTT,Distal Intergenic,4,62939521,62939775,255,1,Gm11481-201,-54981,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,5,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22416,cg08194036,-0.00000477,0.00000458,-1.041553772,0.298430213,loss,ns,0.00000596,0.00000778,0.766198391,0.444141293,pos,ns,0.001771925,0.00227835,0.777723092,0.437325403,pos,ns,0.359195295,-0.0000811,0.0000784,-1.035512769,0.301236595,neg,ns,0.901244375,Dph6,Dph6_Intergenic_downstream,2,114450600,114450649,114450600,114450601,50,-,CGAGATCACTAATTTTTATGGGATTAATTCTGTGGTATAAAAAATGAAGT,Distal Intergenic,2,114518145,114545891,27747,2,Dph6-204,95291,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,10,66632,ENSMUSG00000057147,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22369,cg15475254,-0.00000327,0.00000227,-1.441266942,0.150518626,loss,ns,-0.00000295,0.00000385,-0.766159126,0.444164619,neg,ns,-0.001240874,0.001127621,-1.10043566,0.271996112,neg,ns,0.565437304,0.0000419,0.0000388,1.079748106,0.281093712,pos,ns,0.956953637,Ficd,Ficd_Exon,5,113738411,113738460,113738411,113738412,50,-,CGCAGGGTCATGGAGGAGACCTACTACCATCACATCTACCACACAGTGGC,"Exon (Ficd-201/Ficd, exon 3 of 3)",5,113735803,113740600,4798,1,Ficd-201,2608,Ficd-201;Sart3-201;Sart3-204,Ficd;Sart3;Sart3,0;34050;33178,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,231630,ENSMUSG00000053334,conserved gene but different region,5,113738454,113738630,177,*,177,13,0.627118644,0.75,0.073446328,1.54E-08,CpGisland,TRUE,U10,Tr-S
10502,cg09914254,-0.0000138,0.00000911,-1.513975694,0.131050868,loss,ns,0.0000119,0.0000155,0.766130563,0.444181588,pos,ns,-0.003657005,0.004533821,-0.806605589,0.420512123,neg,ns,0.376221479,0.0000292,0.000155918,0.187229581,0.851603112,pos,ns,0.724545733,Npas3,Npas3_Intron,12,53915623,53915672,53915671,53915672,50,-,ACTCATCAAAACAGAGGGCAGCGCTGAAGTTTCATTAACAGATCATCTCG,"Intron (Npas3-204/Npas3, intron 4 of 10)",12,53248157,54069532,821376,1,Npas3-204,667466,Npas3-204;Npas3-201;Npas3-203,Npas3;Npas3;Npas3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,83,103,27386,ENSMUSG00000021010,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9618,cg16003884,-0.00000509,0.00000199,-2.55997024,0.010942047,loss,ns,-0.00000259,0.00000338,-0.766127382,0.444183477,neg,ns,-0.002985539,0.000989749,-3.01645936,0.002769188,neg,ns,2.557647562,0.0000893,0.000034,2.623604921,0.009130889,pos,ns,0.949619999,Epc2,Epc2_Exon,2,49547445,49547494,49547493,49547494,50,-,GGGCTCAAGCACCTCTGACTGTATGTCTAAAACACTTGACTCAGCCAGCG,"Exon (Epc2-201/Epc2, exon 12 of 14)",2,49451486,49551948,100463,1,Epc2-201,95959,Epc2-201,Epc2,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,14,227867,ENSMUSG00000069495,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
983,cg07611015,0.00000152,0.00000317,0.479397197,0.631994103,gain,ns,-0.00000413,0.00000539,-0.766076457,0.444213732,neg,ns,0.000962944,0.00157897,0.609855747,0.542404126,pos,ns,0.265677015,-0.0000782,0.0000543,-1.439474245,0.151025198,neg,ns,0.056597697,Qk,Qk_Exon,17,10318768,10318817,10318768,10318769,50,-,CGCAGAAGTTGGGCAGGCTGCTCATGAGCTTCTTGTCGTTCATCAGCTGC,Promoter (<=1kb),17,10202601,10319380,116780,2,Qk-204,563,Qk-204;Qk-202;Qk-201;Qk-206,Qk;Qk;Qk;Qk,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,17,19317,ENSMUSG00000062078,conserved gene and region,17,10318331,10319629,1299,*,1299,229,0.788298691,1.137473759,0.176289453,1.34E-239,CpGisland,TRUE,U1,Pr-A
26880,cg01268748,-0.0000203,0.0000104,-1.953376713,0.05167428,loss,ns,-0.0000135,0.0000176,-0.7660384,0.444236342,neg,ns,-0.010449951,0.005166729,-2.022546837,0.043978201,neg,ns,1.356762541,0.000234243,0.000177683,1.318317414,0.188370626,pos,ns,0.667206203,Cacna1e,Cacna1e_Exon,1,154421103,154421152,154421103,154421104,50,-,CGAGTCAGGTACTCAAAGTTGTCCATGATGACGGCCACAAACAGGTTGAG,"Exon (Cacna1e-203/Cacna1e, exon 38 of 47)",1,154390731,154726356,335626,2,Cacna1e-203,305204,Cacna1e-203;Cacna1e-201;Cacna1e-207;Cacna1e-208,Cacna1e;Cacna1e;Cacna1e;Cacna1e,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,19,12290,ENSMUSG00000004110,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21262,cg18650762,-0.00000127,0.000000684,-1.860816069,0.063716768,loss,ns,0.00000089,0.00000116,0.765944951,0.444291863,pos,ns,0.000520322,0.000340589,1.527715136,0.127602938,pos,ns,0.894139325,-0.00000754,0.0000117,-0.643333798,0.520483132,neg,ns,0.019562015,Kif2a,Kif2a_fiveUTR,13,107022033,107022082,107022033,107022034,50,-,CGTAAATCCCGATCTGGATCTTGCCGAAGTTGGCCGTTGCCATCACCTCA,Promoter (<=1kb),13,106958996,107022118,63123,2,Kif2a-201,36,Kif2a-201;Kif2a-204;Kif2a-206;Kif2a-203,Kif2a;Kif2a;Kif2a;Kif2a,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,5,16563,ENSMUSG00000021693,conserved gene and region,13,107021630,107022735,1106,*,1106,170,0.756781194,1.078182882,0.153707052,4.18E-165,CpGisland,TRUE,U1,Pr-A
21514,cg17029750,-0.00000146,0.0000014,-1.041135384,0.29862401,loss,ns,-0.00000182,0.00000238,-0.76584174,0.44435319,neg,ns,0.000859659,0.000697558,1.232382795,0.21873998,pos,ns,0.660071832,-0.0000354,0.000024,-1.476298397,0.140878851,neg,ns,0.059130392,Mtf2,Mtf2_fiveUTR,5,108065936,108065985,108065936,108065937,50,+,CGGTTGGCACCACTGAAGTGACCGAATGAGGTGAGAGACCTTGGCCTGGG,Promoter (<=1kb),5,108065674,108107163,41490,1,Mtf2-206,262,Mtf2-206;Mtf2-203;Mtf2-209;Mtf2-205;Mtf2-216;Mtf2-214;Mtf2-207;Mtf2-210;Mtf2-201;Mtf2-213;Mtf2-202;Mtf2-212,Mtf2;Mtf2;Mtf2;Mtf2;Mtf2;Mtf2;Mtf2;Mtf2;Mtf2;Mtf2;Mtf2;Mtf2,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,7,17765,ENSMUSG00000029267,conserved gene and region,5,108065444,108066024,581,*,581,50,0.611015491,0.926634769,0.08605852,8.77E-35,CpGisland,TRUE,U1,Pr-A
26706,cg09343898,0.00000158,0.00000697,0.227193742,0.820422848,gain,ns,0.00000907,0.0000118,0.765755657,0.444404343,pos,ns,0.000866551,0.003469369,0.249771782,0.802929272,pos,ns,0.095322709,0.0000539,0.000119311,0.451596877,0.651875198,pos,ns,0.900462193,Phf8,Phf8_Exon,X,151572383,151572432,151572383,151572384,50,+,CGTTGGGAAGACGAGCAATATCTTTGGGCTGCAGAGGATCTTCCCAGCCG,"Exon (Phf8-211/Phf8, exon 13 of 22)",20,151520672,151625833,105162,1,Phf8-203,51711,Phf8-204;Phf8-203;Phf8-211;Phf8-206;Phf8-202;Phf8-205;Phf8-201;Phf8-210,Phf8;Phf8;Phf8;Phf8;Phf8;Phf8;Phf8;Phf8,51711;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,320595,ENSMUSG00000041229,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6085,cg22078690,0.00000247,0.00000101,2.455150765,0.014631508,gain,ns,0.00000131,0.00000171,0.765612686,0.444489308,pos,ns,0.000211261,0.000500686,0.421942222,0.673359651,pos,ns,0.171752911,0.000016,0.0000172,0.926906661,0.354696064,pos,ns,0.016138134,Ttll11,Ttll11_Intergenic_upstream,2,36011569,36011618,36011569,36011570,50,+,CGCCGCCGCCGCACTATAATTTTCCAAACAGGATCTTGCAATCAGGGCCT,Distal Intergenic,2,35902351,35979913,77563,2,Ttll11-203,-31656,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,7,74410,ENSMUSG00000026885,mapped to different genes,2,36011338,36011579,242,*,242,25,0.669421488,0.936387556,0.103305785,1.00E-19,CpGisland,TRUE,U3,Pr-B
20380,cg22476468,0.0000597,0.00000568,10.50858831,2.70E-22,gain,yes,-0.00000739,0.00000965,-0.765201276,0.444733853,neg,ns,0.004622201,0.002827579,1.634684734,0.103130168,pos,ns,0.986614274,-0.0000154,0.0000972,-0.158611391,0.87407833,neg,ns,0.100125625,Hoxc5,Hoxc5_Exon,15,103014517,103014566,103014565,103014566,50,+,AAACTGCACATGAGCCACGGTAAACTTTAGGACTTCATTTTGCGCTCTCG,"Exon (Hoxc5-201/Hoxc5, exon 1 of 2)",15,102967443,103015676,48234,1,Hoxc5-202,47074,Hoxc4-202;Hoxc5-202;Hoxc5-201;Hoxc6-202;Hoxc6-203;Hoxc6-201,Hoxc4;Hoxc5;Hoxc5;Hoxc6;Hoxc6;Hoxc6,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,72,134,15424,ENSMUSG00000022485,mapped to different genes,15,103014167,103014734,568,*,568,41,0.588028169,0.835773758,0.072183099,1.73E-25,CpGisland,TRUE,U13,Hc-P
4797,cg13354105,-0.00000988,0.000011,-0.89564106,0.371139421,loss,ns,0.0000143,0.0000187,0.765004844,0.444850642,pos,ns,-0.005584928,0.00548769,-1.017719178,0.309605039,neg,ns,0.50919198,-0.000217846,0.000188721,-1.154325964,0.249255645,neg,ns,0.75615,Prkg1,Prkg1_Exon,19,30594978,30595027,30595026,30595027,50,-,TGCTTCTCTGAGCGGATGTGCTCCTGCTGTCTTGTGTCCACAATGTGACG,"Exon (Prkg1-201/Prkg1, exon 11 of 18)",19,30564489,31765033,1200545,2,Prkg1-201,1170006,Prkg1-201;Prkg1-208;Prkg1-202,Prkg1;Prkg1;Prkg1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,13,19091,ENSMUSG00000052920,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5413,cg18922916,0.0000114,0.00000541,2.113932417,0.035319419,gain,ns,0.00000703,0.00000919,0.764857892,0.444938023,pos,ns,0.005731378,0.002692304,2.1288007,0.034058885,pos,ns,1.467769578,-0.0000843,0.0000926,-0.910008918,0.363524803,neg,ns,0.85530887,Exoc4,Exoc4_Intron,6,33873109,33873158,33873109,33873110,50,-,CGGACAGTCTCTGCATTGTTCATTATTTAGTGTTTGCTAAGCTGATGGCA,"Intron (Exoc4-201/Exoc4, intron 14 of 17)",6,33249085,33973979,724895,1,Exoc4-201,624024,Exoc4-201;Exoc4-205,Exoc4;Exoc4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,7,20336,ENSMUSG00000029763,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12829,cg17779243,-0.00000123,0.000000828,-1.488575053,0.13761586,loss,ns,0.00000108,0.00000141,0.764780735,0.444983906,pos,ns,0.000920254,0.000412163,2.232739966,0.026279872,pos,ns,1.580376748,-0.0000283,0.0000142,-1.99875376,0.046507896,neg,ns,0.976220762,Rsrc1,Rsrc1_Intron,3,67265271,67265320,67265271,67265272,50,+,CGCCTAATGACTCCTCCAAAGGCAGATTTATGAAGAAAAAATTAACTTTG,"Intron (Rsrc1-206/Rsrc1, intron 6 of 9)",3,66981390,67356559,375170,1,Rsrc1-206,283881,Rsrc1-206;Rsrc1-203;Rsrc1-202;Rsrc1-201;Rsrc1-209;Rsrc1-205,Rsrc1;Rsrc1;Rsrc1;Rsrc1;Rsrc1;Rsrc1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,37,66880,ENSMUSG00000034544,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
426,cg20425162,0.0000132,0.00000346,3.810504705,0.000167245,gain,ns,-0.00000449,0.00000587,-0.764458348,0.445175651,neg,ns,-0.002764272,0.001721112,-1.606096649,0.109270789,neg,ns,0.961495921,0.000103756,0.0000592,1.752957147,0.080597826,pos,ns,0.850187512,Pcnx3,Pcnx3_Exon,19,5681563,5681612,5681611,5681612,50,-,GTGCAGGGAGTCCTGGTCCAGCAGGTCAAACTGCAGTCCCCACAGCCGCG,"Exon (Pcnx3-204/Pcnx3, exon 2 of 7)",19,5664635,5688908,24274,2,Pcnx3-202,7296,Pcnx3-202;Pcnx3-201;Pcnx3-210;Pcnx3-208;Pcnx3-204;Pcnx3-209;Pcnx3-212;Pcnx3-207,Pcnx3;Pcnx3;Pcnx3;Pcnx3;Pcnx3;Pcnx3;Pcnx3;Pcnx3,0;0;0;-1986;0;0;0;7083,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,7,104401,ENSMUSG00000054874,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16949,cg26922708,0.0000286,0.00000901,3.167846677,0.00168877,gain,ns,0.0000117,0.0000153,0.764399726,0.445210523,pos,ns,0.012304775,0.004486562,2.742584079,0.006450244,pos,ns,2.190423878,-0.000413116,0.000154293,-2.677488655,0.00781272,neg,ns,0.430167513,4933402J07Rik,4933402J07Rik_Intergenic_downstream,8,87602291,87602340,87602339,87602340,50,+,GAGAAGCCCCTCCATTCTTTCCATGTCCATAAGGCAATTAAGTCTTCACG,Distal Intergenic,8,87563853,87589424,25572,1,4933402J07Rik-201,38438,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,5,330820,ENSMUSG00000069971,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8927,cg14956793,0.0000023,0.00000771,0.297818447,0.766041228,gain,ns,-0.00001,0.0000131,-0.764360362,0.445233939,neg,ns,-0.002786844,0.003837402,-0.726231983,0.46824453,neg,ns,0.329527287,-0.00000602,0.000131968,-0.045634657,0.963630828,neg,ns,0.081968513,Psd,Psd_fiveUTR,19,46326548,46326597,46326548,46326549,50,+,CGCGTGTCCCTAGGAGGCTGCCACATGACCTGTTACATGCCACACGCGCT,Promoter (<=1kb),19,46312087,46327156,15070,2,Psd-201,559,Cuedc2-203;Cuedc2-201;Cuedc2-202;Cuedc2-204;Cuedc2-205;Cuedc2-206;Cuedc2-211;Cuedc2-213;Cuedc2-208;Cuedc2-214;Cuedc2-212;Fbxl15-201;Fbxl15-202;Psd-201;Psd-202;Psd-210;Psd-205;Psd-212;Psd-207;Psd-213;Psd-203;Psd-204;Psd-206;Psd-209,Cuedc2;Cuedc2;Cuedc2;Cuedc2;Cuedc2;Cuedc2;Cuedc2;Cuedc2;Cuedc2;Cuedc2;Cuedc2;Fbxl15;Fbxl15;Psd;Psd;Psd;Psd;Psd;Psd;Psd;Psd;Psd;Psd;Psd,0;0;0;0;0;0;0;5459;12029;6182;6244;-1587;-1590;0;0;0;-962;-2489;0;-42;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,6,73728,ENSMUSG00000037126,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
23932,cg16524762,-0.00000319,0.00000107,-2.981465276,0.003096049,loss,ns,-0.00000139,0.00000182,-0.76435963,0.445234375,neg,ns,-0.000764286,0.000532518,-1.435231938,0.152229167,neg,ns,0.817502128,-0.0000222,0.0000183,-1.21027304,0.227096139,neg,ns,0.018217145,Rlf,Rlf_fiveUTR,4,121215066,121215115,121215066,121215067,50,-,CGCCATCTTCCCACGGCCCACCAGCGCGTAGGCAACCAAGCCACGTGACT,Promoter (<=1kb),4,121145883,121215084,69202,2,Rlf-201,0,Rlf-201;Rlf-204,Rlf;Rlf,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,3,109263,ENSMUSG00000049878,conserved gene but different region,4,121214642,121215310,669,*,669,68,0.684603886,0.892052474,0.101644245,2.84E-52,CpGisland,TRUE,NA,NRS
22712,cg12497410,-0.0000623,0.00000867,-7.182743895,5.10E-12,loss,yes,-0.0000113,0.0000147,-0.764334155,0.44524953,neg,ns,-0.012299475,0.00431726,-2.848907868,0.004680416,neg,ns,2.329715548,0.000234552,0.00014847,1.579790891,0.115174539,pos,ns,0.778114687,Caskin2,Caskin2_Exon,11,115802347,115802396,115802347,115802348,50,+,CGTAGCCGCTGCTCACCAGCTGCTTGTGGTACTGTGGCAGCCCCAGTGCA,"Exon (Caskin2-201/Caskin2, exon 17 of 20)",11,115799183,115813630,14448,2,Caskin2-201,11234,Caskin2-201;Caskin2-202;Caskin2-203;Caskin2-204;Tmem94-201;Tmem94-202;Tmem94-208,Caskin2;Caskin2;Caskin2;Caskin2;Tmem94;Tmem94;Tmem94,0;-1466;5706;11243;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,140721,ENSMUSG00000034471,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27163,cg25035350,-0.00000211,0.000000962,-2.193375538,0.029022741,loss,ns,-0.00000125,0.00000163,-0.764301229,0.445269118,neg,ns,-0.000714067,0.000478717,-1.491628051,0.136813571,neg,ns,0.863870822,0.00000754,0.0000165,0.457875359,0.647362759,pos,ns,0.981450063,Tnr,Tnr_Exon,1,159858198,159858247,159858246,159858247,50,-,GAGTGGCTGGTATCAGCGACAGGTCCATTGAGCTGGAATGGGACGGGCCG,"Exon (Tnr-202/Tnr, exon 5 of 23)",1,159523769,159931729,407961,1,Tnr-202,334429,Tnr-202;Tnr-201;Tnr-203,Tnr;Tnr;Tnr,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,13,21960,ENSMUSG00000015829,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1999,cg13651150,-0.00000788,0.00000324,-2.431642124,0.015596757,loss,ns,0.0000042,0.0000055,0.76417387,0.445344888,pos,ns,-0.001096584,0.001611908,-0.680301657,0.496821225,neg,ns,0.303799859,-0.0000302,0.0000554,-0.545470031,0.585822546,neg,ns,0.944613086,Gm5283,Gm5283_Intergenic_downstream,3,16939799,16939848,16939799,16939800,50,-,CGTATACATTCAGTTAAATGCAATAAACATTAGGCACTATTTAGTGAGCT,Distal Intergenic,3,17230642,17230975,334,2,Gm5283-201,291176,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,10,383936,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15191,cg22371222,-0.00000459,0.00000205,-2.233030477,0.026260497,loss,ns,-0.00000267,0.00000349,-0.764149832,0.44535919,neg,ns,-0.002477717,0.001022572,-2.423024664,0.01596444,neg,ns,1.796846298,0.0000618,0.0000352,1.756030104,0.08007076,pos,ns,0.955609206,Ddx17,Ddx17_threeUTR,15,79533148,79533197,79533148,79533149,50,-,CGCTCTGTGAACTGGCTTAGATGCTTCTCTGTAGCCCCATTTGGTTGCCA,3' UTR,15,79527736,79546741,19006,2,Ddx17-201,13544,Ddx17-201;Ddx17-203;Ddx17-204;Ddx17-202,Ddx17;Ddx17;Ddx17;Ddx17,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,9,14,67040,ENSMUSG00000055065,conserved gene and region,15,79532980,79533149,170,*,170,13,0.594117647,0.886126704,0.076470588,9.43E-09,CpGisland,TRUE,U10,Tr-S
24325,cg11174533,0.00000494,0.00000331,1.493581311,0.136302184,gain,ns,-0.0000043,0.00000562,-0.764115379,0.44537969,neg,ns,-0.004563223,0.00164764,-2.769550871,0.005951704,neg,ns,2.22535865,0.0000759,0.0000567,1.339862735,0.181271288,pos,ns,0.051317716,Pou3f1,Pou3f1_threeUTR,4,124659750,124659799,124659750,124659751,50,-,CGCGAGAGCCGCGTCTGTGTATAAAAGCAGGAAATAGCCAAAGCTTTAAT,3' UTR,4,124656807,124660655,3849,1,Pou3f1-201,2943,Pou3f1-201,Pou3f1,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,85,18991,ENSMUSG00000090125,conserved gene and region,4,124659224,124659760,537,*,537,47,0.648044693,0.8390625,0.087523278,4.32E-33,CpGisland,TRUE,U3,Pr-B
19563,cg26973329,0.0000424,0.00000565,7.501606672,6.71E-13,gain,yes,-0.00000734,0.00000961,-0.764068034,0.44540786,neg,ns,0.002821678,0.002814247,1.002640274,0.316816433,pos,ns,0.4991923,0.0000676,0.0000968,0.698178153,0.485589163,pos,ns,0.093163715,Sox14,Sox14_Intergenic_downstream,9,99869125,99869174,99869173,99869174,50,-,GCAGGCTTTGGGAAACGATATTCAAAAAAGTATATAATCTCCATATGCCG,Distal Intergenic,9,99874220,99875655,1436,2,Sox14-202,6530,Sox14-201,Sox14,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,12,18,20669,ENSMUSG00000053747,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
21525,cg20796968,-0.0000172,0.00000289,-5.957262724,6.96E-09,loss,yes,0.00000376,0.00000492,0.764047415,0.445420129,pos,ns,0.00034252,0.001440279,0.237814834,0.812181816,pos,ns,0.090346738,-0.0000444,0.0000495,-0.895430714,0.371251632,neg,ns,0.95172932,Bsn,Bsn_Exon,9,108105652,108105701,108105700,108105701,50,+,TCCTCAGGGGGTTCATCGTAGTCATGGTAGCTGTGCCTGGCAGGGCCTCG,"Exon (Bsn-201/Bsn, exon 7 of 12)",9,108096022,108190384,94363,2,Bsn-201,84683,Bsn-201;Bsn-202,Bsn;Bsn,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,8,12217,ENSMUSG00000032589,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20275,cg13775517,0.0000199,0.0000038,5.245654162,0.000000289,gain,yes,0.00000494,0.00000646,0.763991344,0.445453493,pos,ns,-0.000228637,0.001892706,-0.120798768,0.903928684,neg,ns,0.043865832,-0.00000137,0.0000651,-0.021062833,0.983209084,neg,ns,0.013094111,Hoxc5,Hoxc5_Exon,15,102981769,102981818,102981817,102981818,50,+,ACCCAGCGGTTTGGTGCCGGACTGTAGCGATTTTCCGTCCTGTAGCTTCG,"Exon (Hoxc9-201/Hoxc9, exon 2 of 3)",15,102967443,103015676,48234,1,Hoxc5-202,14326,Hoxc5-202;Hoxc9-202;Hoxc9-201,Hoxc5;Hoxc9;Hoxc9,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,72,134,15424,ENSMUSG00000022485,conserved gene and region,15,102981651,102982178,528,*,528,70,0.696969697,1.109010712,0.132575758,6.92E-63,CpGisland,TRUE,U3,Pr-B
8872,cg27399812,-0.0000113,0.00000354,-3.20350098,0.001498887,loss,ns,-0.00000459,0.00000601,-0.763934327,0.445487422,neg,ns,-0.004318801,0.001761993,-2.451088792,0.01479441,neg,ns,1.829902344,0.0000384,0.0000606,0.634061051,0.526508563,pos,ns,0.953629993,Gtpbp2,Gtpbp2_threeUTR,17,46168211,46168260,46168259,46168260,50,-,GAAGGTGGGCGCCAAACTGCTGTTCCGGGAGGGTGTCACCAAGGGCATCG,3' UTR,17,46161032,46169368,8337,1,Gtpbp2-211,7179,Gtpbp2-211;Gtpbp2-201;Gtpbp2-203;Gtpbp2-217;Gtpbp2-206;Gtpbp2-216;Gtpbp2-209;Gtpbp2-215;Gtpbp2-214;Gtpbp2-212;Gtpbp2-202;Gtpbp2-205;Gtpbp2-213;Gtpbp2-210;Gtpbp2-208;Gtpbp2-207;Polh-201;Polh-202,Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Polh;Polh,0;0;7162;0;7100;6916;5178;0;0;0;0;0;1344;0;0;0;34385;34362,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,TRUE,FALSE,threeUTR,7,7,56055,ENSMUSG00000023952,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2782,cg20059238,0.00000489,0.00000208,2.354097825,0.019191453,gain,ns,0.0000027,0.00000353,0.763881375,0.445518934,pos,ns,0.002563042,0.001034464,2.477653175,0.013757529,pos,ns,1.861459557,-0.000135797,0.0000356,-3.817177967,0.000162986,neg,ns,0.941332399,Wdpcp,Wdpcp_Intron,11,21694332,21694381,21694332,21694333,50,-,CGCTTAATCCCCAGAAAGTGGTTCGATTATTGCTGACCAGCAATGGCAAG,"Intron (Wdpcp-201/Wdpcp, intron 8 of 17)",11,21572235,21898989,326755,1,Wdpcp-201,122097,Wdpcp-201;Wdpcp-205;Wdpcp-204;Wdpcp-206,Wdpcp;Wdpcp;Wdpcp;Wdpcp,0;0;0;-748,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,7,216560,ENSMUSG00000020319,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11948,cg09126410,0.00000253,0.00000217,1.167804505,0.243783015,gain,ns,-0.00000282,0.00000369,-0.763849605,0.44553784,neg,ns,-0.0000554,0.001079809,-0.051281196,0.959134479,neg,ns,0.018120497,0.0000133,0.0000371,0.357740131,0.720781243,pos,ns,0.933419958,Psmd14,Psmd14_Intron,2,61794935,61794984,61794935,61794936,50,-,CGTGCATGATGGGATAGCCATCTGGGGGTCTTTGTTGATAAACTGTTAAA,"Intron (Psmd14-201/Psmd14, intron 10 of 11)",2,61711694,61800376,88683,1,Psmd14-201,83241,Psmd14-201;Psmd14-208;Psmd14-202,Psmd14;Psmd14;Psmd14,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,9,59029,ENSMUSG00000026914,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17892,cg16602661,0.0000128,0.00000228,5.630090244,4.04E-08,gain,yes,0.00000296,0.00000387,0.763771213,0.445584494,pos,ns,0.002417904,0.001134007,2.132176873,0.033778097,pos,ns,1.471364816,-0.0000058,0.000039,-0.148846804,0.881771298,neg,ns,0.043866873,Irx5,Irx5_Intron,8,92365679,92365728,92365679,92365680,50,+,CGCTCCCGCCTGATGGATGCAAATGTAAATGTGCACTTATTTAATTGGAT,"Intron (Irx5-202/Irx5, intron 4 of 4)",8,92357625,92376286,18662,1,Irx5-202,8054,Irx5-202;Irx5-201,Irx5;Irx5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,30,54352,ENSMUSG00000031737,conserved gene and region,8,92365567,92365686,120,*,120,12,0.625,1.07946027,0.1,1.82E-09,CpGisland,TRUE,U13,Hc-P
9204,cg01360368,0.0000548,0.0000112,4.912392865,0.00000146,gain,yes,-0.0000145,0.0000189,-0.763716111,0.445617289,neg,ns,0.024689733,0.005550702,4.448038397,0.0000121,pos,ns,4.917472451,-0.000515161,0.000190888,-2.698757977,0.007341428,neg,ns,0.25525385,Cadm1,Cadm1_Intron,9,47532648,47532697,47532648,47532649,50,-,CGTGCATGTCAAAGCTACATGAAAATTCTGTTGCCAGTTACCATGGAAGC,"Intron (Cadm1-204/Cadm1, intron 1 of 9)",9,47530173,47853385,323213,1,Cadm1-204,2475,Cadm1-204;Cadm1-209;Cadm1-206;Cadm1-202;Cadm1-203;Cadm1-207;Cadm1-205;Cadm1-211;Cadm1-210;Cadm1-208;Cadm1-201,Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,77,54725,ENSMUSG00000032076,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
6135,cg06871806,0.0000157,0.00000411,3.818035791,0.000162446,gain,ns,-0.00000533,0.00000697,-0.763589115,0.445692878,neg,ns,-0.001170601,0.002043306,-0.572895744,0.567130583,neg,ns,0.246316933,0.0000897,0.0000703,1.275953751,0.202927054,pos,ns,0.907603177,Tenm2,Tenm2_Exon,11,36139565,36139614,36139565,36139566,50,+,CGTTTGCCTACCAATGGTGCAGTGTTCACCATTCCAGCCCTCTCGGCATT,"Exon (Tenm2-202/Tenm2, exon 14 of 31)",11,36006656,37235882,1229227,2,Tenm2-202,1096268,Tenm2-202;Tenm2-208;Tenm2-201;Tenm2-204;Tenm2-205,Tenm2;Tenm2;Tenm2;Tenm2;Tenm2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,21,84,23964,ENSMUSG00000049336,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11932,cg18683707,0.00000707,0.0000106,0.665862669,0.505994046,gain,ns,0.0000138,0.000018,0.763491812,0.445750798,pos,ns,0.00929838,0.005282707,1.760154546,0.079367773,pos,ns,1.100355808,-0.00019634,0.000181672,-1.080738785,0.280653373,neg,ns,0.229770752,Il17b,Il17b_threeUTR,18,61692252,61692301,61692300,61692301,50,+,CGGTGCCTGTGTCTGGGCTGTGTGAACCCCTTCACCATGCAGGAGGACCG,3' UTR,18,61684887,61692538,7652,1,Il17b-203,7365,Il17b-203;Il17b-202;Il17b-201;Pcyox1l-201,Il17b;Il17b;Il17b;Pcyox1l,0;0;0;15334,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,3,56069,ENSMUSG00000024578,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
10467,cg18044885,-0.0000226,0.00000757,-2.983126242,0.003079769,loss,ns,0.00000982,0.0000129,0.763485664,0.445754458,pos,ns,-0.011497151,0.003769429,-3.050104032,0.002485094,neg,ns,2.604657238,0.000380982,0.00012963,2.938985165,0.003540185,pos,ns,0.824533743,Gm5449,Gm5449_Intron,13,53698094,53698143,53698094,53698095,50,-,CGTCAGAGCTGCCACTACAAAGTGGATGTTAATTACCTAAAACAATGGGT,"Intron (Gm34278-201/Gm34278-201, intron 2 of 4)",13,53525703,53526059,357,1,Gm5449-201,172440,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,2,432760,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9986,cg11264599,0.0000316,0.00000543,5.830533529,1.39E-08,gain,yes,0.00000704,0.00000922,0.763374972,0.445820354,pos,ns,0.005956912,0.002700773,2.205632117,0.028143311,pos,ns,1.550624803,-0.00000348,0.0000929,-0.037423672,0.970171286,neg,ns,0.856884221,Skap2,Skap2_Intergenic_downstream,6,51790487,51790536,51790535,51790536,50,+,TACATGGCTTATGCAAACTTTACATTTATCACGGCAGAACCATCTATCCG,Distal Intergenic,6,51859104,51871929,12826,2,Skap2-207,81393,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,19,54353,ENSMUSG00000059182,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8570,cg17899985,0.000000687,0.00000285,0.2409667,0.809740219,gain,ns,0.0000037,0.00000485,0.763366408,0.445825452,pos,ns,0.002196259,0.001419946,1.546720114,0.122950981,pos,ns,0.910268003,-0.000124045,0.0000488,-2.54024997,0.01156509,neg,ns,0.944078483,Gm13475,Gm13475_Intergenic_downstream,2,45356841,45356890,45356841,45356842,50,-,CGCATCAGAAGAATTCTTGGCAAATTAATGCGCTACCTCTTGGGCTAATT,Distal Intergenic,2,45329232,45329465,234,1,Gm13475-201,27658,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,21,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14724,cg11668811,0.00000563,0.00000592,0.950933974,0.342378691,gain,ns,-0.00000768,0.0000101,-0.763216157,0.445914907,neg,ns,-0.000274602,0.002948877,-0.09312102,0.925867571,neg,ns,0.033451127,-0.000126337,0.000101412,-1.245785248,0.213783955,neg,ns,0.868146718,Rnf165,Rnf165_threeUTR,18,77462233,77462282,77462233,77462234,50,+,CGTCAAATGGCTCAGAAGGCAAAGTTTGGCTGCAAGGGCTATGGCCGTGG,3' UTR,18,77456110,77565136,109027,2,Rnf165-201,102854,Rnf165-201;Rnf165-202;Rnf165-207;Rnf165-204,Rnf165;Rnf165;Rnf165;Rnf165,0;0;4866;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,10,21,225743,ENSMUSG00000025427,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4923,cg11488183,-0.000135502,0.0000107,-12.6500173,7.41E-30,loss,yes,0.0000139,0.0000182,0.763184686,0.445933646,pos,ns,-0.004025877,0.005331273,-0.755143608,0.450736152,neg,ns,0.346077607,-0.000597489,0.000183342,-3.258875227,0.001242793,neg,ns,0.53047595,Prkg1,Prkg1_Intron,19,31361298,31361347,31361298,31361299,50,-,CGAGGAGGAAAAGGACATCTGATTCATAGCAAGCCCTGCCAAAGTACAGC,"Intron (Prkg1-201/Prkg1, intron 2 of 17)",19,30564489,31765033,1200545,2,Prkg1-201,403686,Prkg1-201;Prkg1-202,Prkg1;Prkg1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,13,19091,ENSMUSG00000052920,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17458,cg07887054,-0.0000185,0.00000663,-2.794012874,0.005529935,loss,ns,0.00000859,0.0000113,0.763094628,0.44598727,pos,ns,-0.003400795,0.003297365,-1.031367658,0.303172414,neg,ns,0.518310318,-0.0000373,0.000113396,-0.328776377,0.742546709,neg,ns,0.890543195,Nrxn3,Nrxn3_threeUTR,12,90331944,90331993,90331944,90331945,50,-,CGTCTGGGATGGTGCCCAAATTGCCAGCTGGCAAAATGAATAACCGTGAT,3' UTR,12,88722986,90332878,1609893,1,Nrxn3-213,1608958,Nrxn3-213;Nrxn3-208;Nrxn3-205;Nrxn3-201;Nrxn3-210;Nrxn3-214;Nrxn3-203;Nrxn3-202,Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,14,39,18191,ENSMUSG00000066392,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17271,cg17386116,-0.0000397,0.00000686,-5.790313529,1.72E-08,loss,yes,0.00000889,0.0000116,0.763014575,0.44603494,pos,ns,-0.003790481,0.003411915,-1.110954098,0.267449026,neg,ns,0.572758979,0.00011575,0.000117335,0.986485302,0.32466434,pos,ns,0.929541325,Zbtb7b,Zbtb7b_Exon,3,89379783,89379832,89379831,89379832,50,-,CCAGGCAGTTCTGGCCTTTGAGGTGGCGCTGCAGGTGGTCCTCCTTGGCG,"Exon (Zbtb7b-203/Zbtb7b, exon 3 of 3)",3,89377644,89387189,9546,2,Zbtb7b-203,7357,Dcst2-201;Zbtb7b-203;Zbtb7b-204;Zbtb7b-202;Zbtb7b-201;Zbtb7b-206;Zbtb7b-208;Zbtb7b-209;Zbtb7b-205,Dcst2;Zbtb7b;Zbtb7b;Zbtb7b;Zbtb7b;Zbtb7b;Zbtb7b;Zbtb7b;Zbtb7b,17808;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,12,22724,ENSMUSG00000028042,conserved gene and region,3,89379693,89380002,310,*,310,18,0.635483871,0.606785559,0.058064516,6.12E-10,CpGisland,TRUE,NA,NRS
12027,cg01615615,-0.00000263,0.00000334,-0.789208522,0.430593321,loss,ns,0.00000432,0.00000567,0.762767785,0.446181916,pos,ns,0.004270844,0.001660869,2.571451521,0.010593274,pos,ns,1.974969798,-0.000141605,0.0000571,-2.479195722,0.01369935,neg,ns,0.924799363,Ncor1,Ncor1_Exon,11,62403798,62403847,62403798,62403799,50,+,CGTCTTGATGTTCTCATGGTACACCTTGGTATCTGATGGCTGGTTATACA,"Exon (Ncor1-204/Ncor1, exon 7 of 45)",11,62316426,62438515,122090,2,Ncor1-204,34668,Ncor1-204;Ncor1-201;Ncor1-205;Ncor1-206;Ncor1-208;Ncor1-212;Ncor1-207;Ncor1-203,Ncor1;Ncor1;Ncor1;Ncor1;Ncor1;Ncor1;Ncor1;Ncor1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,10,20185,ENSMUSG00000018501,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10645,cg26659899,0.0000142,0.00000209,6.806644267,5.18E-11,gain,yes,-0.00000271,0.00000355,-0.762722024,0.446209173,neg,ns,0.002451123,0.001040992,2.35460275,0.019165869,pos,ns,1.717471485,0.0000354,0.0000358,0.989986257,0.322952913,pos,ns,0.071819605,Tspan17,Tspan17_Exon,13,54789633,54789682,54789633,54789634,50,-,CGGCTGCTGCGGGAAATACTTCCTGTTTGGCTTCAACATTGTCTTCTGGG,Promoter (<=1kb),13,54789645,54795148,5504,1,Tspan17-209,0,Eif4e1b-209;Eif4e1b-207;Eif4e1b-205;Eif4e1b-204;Eif4e1b-203;Eif4e1b-202;Eif4e1b-208;Eif4e1b-206;Eif4e1b-201;Eif4e1b-210;Tspan17-201;Tspan17-204;Tspan17-207;Tspan17-208;Tspan17-202;Tspan17-209;Tspan17-203;Tspan17-206,Eif4e1b;Eif4e1b;Eif4e1b;Eif4e1b;Eif4e1b;Eif4e1b;Eif4e1b;Eif4e1b;Eif4e1b;Eif4e1b;Tspan17;Tspan17;Tspan17;Tspan17;Tspan17;Tspan17;Tspan17;Tspan17,5635;5632;5632;5632;5632;5630;5630;5630;5620;5613;0;0;0;0;0;0;-3058;-3189,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,74257,ENSMUSG00000025875,conserved gene and region,13,54788989,54789643,655,*,655,54,0.699236641,0.727822705,0.082442748,1.77E-36,CpGisland,TRUE,NA,NRS
20049,cg19513247,-0.00000142,0.00000192,-0.740419346,0.459605995,loss,ns,0.00000248,0.00000326,0.762601666,0.446280864,pos,ns,0.002563614,0.000954581,2.685591254,0.00763006,pos,ns,2.117472052,-0.0000468,0.0000328,-1.424668033,0.155259103,neg,ns,0.071924219,Ubtf,Ubtf_fiveUTR,11,102317764,102317813,102317812,102317813,50,+,CTGTGGCTGCTGCCTGCTGCTCCTCGCGGCGAAAAGCACAAAGCACAGCG,5' UTR,11,102304560,102319096,14537,2,Ubtf-210,1283,Ubtf-210;Ubtf-213;Ubtf-202;Ubtf-203;Ubtf-204;Ubtf-201;Ubtf-205;Ubtf-206;Ubtf-209;Ubtf-208;Ubtf-207,Ubtf;Ubtf;Ubtf;Ubtf;Ubtf;Ubtf;Ubtf;Ubtf;Ubtf;Ubtf;Ubtf,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,8,21429,ENSMUSG00000020923,conserved gene and region,11,102316796,102318395,1600,*,1600,216,0.781875,0.883525923,0.135,8.47E-195,CpGisland,TRUE,U1,Pr-A
12757,cg11135624,-0.00000124,0.00000314,-0.396018934,0.692363487,loss,ns,-0.00000407,0.00000533,-0.762582979,0.446291996,neg,ns,-0.003467359,0.001562831,-2.218639697,0.02723533,neg,ns,1.564867358,0.000143851,0.0000537,2.676519552,0.007834829,pos,ns,0.059909332,Phox2b,Phox2b_Promoter,5,67098548,67098597,67098596,67098597,50,+,GCAATCGCTTCTAACGTGATAAATTCTTTCATTTGTGTAAGCAAATTTCG,Promoter (<=1kb),5,67094399,67099301,4903,2,Phox2b-201,704,Phox2b-201;Phox2b-202,Phox2b;Phox2b,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,13,28,18935,ENSMUSG00000012520,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
25543,cg17245223,-0.00000432,0.00000254,-1.703520199,0.089472938,loss,ns,0.00000329,0.00000431,0.762471527,0.44635839,pos,ns,-0.001367723,0.001262269,-1.083542546,0.279409701,neg,ns,0.553758519,0.0000818,0.0000434,1.885198905,0.060338075,pos,ns,0.930714195,Ebf3,Ebf3_Intron,7,137207013,137207062,137207013,137207014,50,+,CGGGCTTTATTATGGCTCTGCCTGACTCCAACAAAAACTGAGCCTGGAGG,"Intron (Ebf3-204/Ebf3, intron 10 of 15)",7,137193673,137314445,120773,2,Ebf3-204,107383,Ebf3-204;Ebf3-201;Ebf3-202;Ebf3-203;Ebf3-208;Ebf3-205,Ebf3;Ebf3;Ebf3;Ebf3;Ebf3;Ebf3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,62,84,13593,ENSMUSG00000010476,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10456,cg19563106,-0.0000359,0.0000115,-3.126763669,0.001935018,loss,ns,0.0000149,0.0000195,0.762469907,0.446359355,pos,ns,-0.009402419,0.00571451,-1.645358797,0.100909357,neg,ns,0.99606856,-0.000158836,0.000196522,-0.808236423,0.419574286,neg,ns,0.709467201,Npas3,Npas3_Intron,12,53612214,53612263,53612262,53612263,50,+,TAGACAGCTGTTTGGATGTCTCATACTGGGACTGCTGCCCTCAACAAACG,"Intron (Npas3-204/Npas3, intron 2 of 10)",12,53248157,54069532,821376,1,Npas3-204,364057,Npas3-204;Npas3-201;Npas3-203,Npas3;Npas3;Npas3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,83,103,27386,ENSMUSG00000021010,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21873,cg27313020,-0.00000244,0.00000634,-0.385686459,0.699993426,loss,ns,-0.00000821,0.0000108,-0.762349542,0.446431066,neg,ns,0.003183405,0.00315464,1.009118486,0.313704809,pos,ns,0.503478823,-0.000152239,0.000108488,-1.403278893,0.161534518,neg,ns,0.885718117,Gna13,Gna13_Exon,11,109396295,109396344,109396343,109396344,50,+,GATCCCCACTGCTTAAGAGACGTCCAAAAATTCCTGGTGGAATGTTTCCG,"Exon (Gna13-201/Gna13, exon 4 of 4)",11,109362831,109401369,38539,1,Gna13-201,33464,Gna13-201,Gna13,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,14674,ENSMUSG00000020611,conserved gene and region,11,109396315,109396447,133,*,133,12,0.593984962,1.024390244,0.090225564,6.19E-09,CpGisland,TRUE,U10,Tr-S
607,cg04972411,-0.00000238,0.0000019,-1.251842258,0.21157107,loss,ns,0.00000246,0.00000323,0.762126948,0.446563698,pos,ns,0.001124548,0.000946683,1.187881949,0.235789238,pos,ns,0.627476021,-0.0000595,0.0000326,-1.827079422,0.068649187,neg,ns,0.949976453,Dcun1d5,Dcun1d5_Exon,9,7205310,7205359,7205310,7205311,50,-,CGTGTTATGAACAAAGATCAATGGTACAATGTATTAGAATTCAGCAGAAC,"Exon (Dcun1d5-202/Dcun1d5, exon 7 of 8)",9,7184520,7208205,23686,1,Dcun1d5-202,20790,Dcun1d5-202;Dcun1d5-201;Dcun1d5-203;Dcun1d5-204,Dcun1d5;Dcun1d5;Dcun1d5;Dcun1d5,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,76863,ENSMUSG00000032002,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26884,cg08405407,-0.0000208,0.00000813,-2.562743398,0.010856879,loss,ns,-0.0000105,0.0000138,-0.76203546,0.446618218,neg,ns,-0.012435067,0.00404823,-3.071729277,0.002316906,neg,ns,2.635091516,0.0000478,0.000139218,0.343150032,0.731718181,pos,ns,0.775921977,Prdm16,Prdm16_Intron,4,154456518,154456567,154456518,154456519,50,-,CGACGTGACAGAGCCTGGAAGGCAGGTGCTACTGTAATTAGCTATTGTTT,"Intron (Prdm16-201/Prdm16, intron 3 of 16)",4,154316125,154636866,320742,2,Prdm16-201,180299,Prdm16-201;Prdm16-202;Prdm16-203;Prdm16-204;Prdm16-205;Prdm16-206;Prdm16-210;Prdm16-207,Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,32,70673,ENSMUSG00000039410,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14618,cg19365356,0.00000739,0.00000214,3.461988954,0.000611517,gain,ns,-0.00000276,0.00000363,-0.761941295,0.446674337,neg,ns,0.003157471,0.00106313,2.969974851,0.003210854,pos,ns,2.493379474,-0.000143733,0.0000366,-3.931330815,0.000104245,neg,ns,0.070712398,Nr3c2,Nr3c2_Intron,8,76902639,76902688,76902639,76902640,50,+,CGGAGGCACAGTCAGTATGGTGCTGTGTGCTTGTTGTTTTGTTTTGGTTT,"Intron (Nr3c2-207/Nr3c2, intron 1 of 1)",8,76899442,76908413,8972,1,Nr3c2-207,3197,Nr3c2-207;Nr3c2-204;Nr3c2-208;Nr3c2-203;Nr3c2-206;Nr3c2-202,Nr3c2;Nr3c2;Nr3c2;Nr3c2;Nr3c2;Nr3c2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,4,110784,ENSMUSG00000031618,conserved gene and region,8,76902467,76902640,174,*,174,12,0.655172414,0.697627798,0.068965517,0.00000013,CpGisland,TRUE,NA,NRS
15441,cg04492620,0.00000344,0.00000378,0.909029571,0.364040694,gain,ns,0.00000489,0.00000642,0.761554042,0.446905168,pos,ns,-0.000888577,0.001881652,-0.472232085,0.63709339,neg,ns,0.195796901,-0.0000557,0.0000647,-0.860763962,0.390033299,neg,ns,0.51522237,Arrdc3,Arrdc3_fiveUTR,13,80890578,80890627,80890578,80890579,50,-,CGAATGGTGGTGCCAAAGGCAGCCATTTACCAAACACAGGCCTTCTATGC,5' UTR,13,80883410,80896035,12626,1,Arrdc3-203,7168,Arrdc3-202;Arrdc3-203;Arrdc3-201;Arrdc3-205;Arrdc3-204;Arrdc3-206,Arrdc3;Arrdc3;Arrdc3;Arrdc3;Arrdc3;Arrdc3,0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,8,105171,ENSMUSG00000074794,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13426,cg19382919,0.0000124,0.0000021,5.925523403,8.28E-09,gain,yes,-0.00000272,0.00000357,-0.761542196,0.446912231,neg,ns,0.000290266,0.001045204,0.277712719,0.781418013,pos,ns,0.107116582,0.00000174,0.0000359,0.048497663,0.961350857,pos,ns,0.052529628,Sp5,Sp5_Promoter,2,70474807,70474856,70474807,70474808,50,-,CGGCAAGGCCCCCTTTGATCAGGAAAATCCAATTATTTGTGTATATACAT,Promoter (<=1kb),2,70474923,70477729,2807,1,Sp5-201,-116,Sp5-201,Sp5,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,4,11,64406,ENSMUSG00000075304,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
27038,cg18878791,0.0000169,0.0000041,4.109462859,0.0000508,gain,ns,-0.00000531,0.00000697,-0.761474282,0.446952719,neg,ns,-0.004001958,0.002042015,-1.959808455,0.050913864,neg,ns,1.293163944,0.0000248,0.0000702,0.353139057,0.724224204,pos,ns,0.768087466,Dlgap4,Dlgap4_Exon,2,156749100,156749149,156749148,156749149,50,+,CCCCAAGATTGCCCAGATCAAGCGCAACCTCTCCTATGGAGACAACAGCG,"Exon (Dlgap4-205/Dlgap4, exon 10 of 13)",2,156613705,156764361,150657,1,Dlgap4-205,135395,Dlgap4-205;Dlgap4-212;Dlgap4-206;Dlgap4-202;Dlgap4-210;Dlgap4-209;Dlgap4-204;Dlgap4-208;Dlgap4-211;Dlgap4-214;Dlgap4-213;Dlgap4-201;Dlgap4-203,Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,17,228836,ENSMUSG00000061689,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10862,cg20485582,-0.00000656,0.00000258,-2.540908416,0.011543787,loss,ns,0.00000334,0.00000438,0.761141409,0.447151203,pos,ns,0.002117638,0.001284437,1.648689473,0.100224279,pos,ns,0.999027059,-0.0000867,0.0000442,-1.962564032,0.050590969,neg,ns,0.939540212,Ddx46,Ddx46_Exon,13,55660434,55660483,55660482,55660483,50,+,TTTCTGAATTTTACAGGTTCTTCAGGCCCTATGATGGTATGCAAGAGACG,"Exon (Ddx46-204/Ddx46, exon 12 of 16)",13,55635027,55681256,46230,1,Ddx46-201,25407,Ddx46-201;Ddx46-202;Ddx46-204;Ddx46-203,Ddx46;Ddx46;Ddx46;Ddx46,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,212880,ENSMUSG00000021500,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22638,cg17026002,0.0000625,0.0000195,3.2057001,0.001487848,gain,ns,0.0000252,0.0000331,0.761086132,0.447184168,pos,ns,0.036446237,0.009708448,3.754074477,0.000207713,pos,ns,3.682535741,-0.000752567,0.000333873,-2.254053587,0.024890899,neg,ns,0.377346316,BC052040,BC052040_Intron,2,115520625,115520674,115520673,115520674,50,+,TTCCTGACAACCTTCTACAGTTATTGACATTACAAATACCAGCAACAACG,"Intron (3110099E03Rik-203/3110099E03Rik-203, intron 1 of 3)",2,115581716,115778768,197053,1,BC052040-203,-61042,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,37,49,399568,ENSMUSG00000040282,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
27831,cg20863884,-0.00000953,0.00000156,-6.102395454,3.12E-09,loss,yes,-0.00000202,0.00000265,-0.761039998,0.447211682,neg,ns,-0.000088,0.000776875,-0.113272154,0.909888112,neg,ns,0.041012009,-0.0000205,0.0000267,-0.766155793,0.444166599,neg,ns,0.968396188,Esrrg,Esrrg_Intron,1,188167427,188167476,188167475,188167476,50,+,ATCATTAAATATCAGAACCAACAGTCAATTTTTAGTATTTTCAATTTGCG,"Intron (Esrrg-203/Esrrg, intron 6 of 7)",1,187609029,188214386,605358,1,Esrrg-203,558398,Esrrg-203;Esrrg-201;Esrrg-202,Esrrg;Esrrg;Esrrg,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,60,26381,ENSMUSG00000026610,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9594,cg19537233,-0.00000109,0.000000657,-1.658857866,0.098155796,loss,ns,-0.000000849,0.00000112,-0.761023776,0.447221356,neg,ns,-0.000268422,0.00032692,-0.821064121,0.412240701,neg,ns,0.384849133,-0.0000118,0.0000112,-1.052400116,0.293435638,neg,ns,0.012026208,Epc2,Epc2_Exon,2,49451852,49451901,49451852,49451853,50,+,CGCTGCCTATCTACCGCGGCAAGGACATGCCTGATCTCAACGACTGCGTC,Promoter (<=1kb),2,49451486,49551948,100463,1,Epc2-201,366,Epc2-201,Epc2,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,14,227867,ENSMUSG00000069495,conserved gene but different region,2,49451467,49451969,503,*,503,63,0.731610338,0.950850662,0.125248509,7.63E-55,CpGisland,TRUE,U1,Pr-A
14175,cg22129163,-0.000000307,0.00000761,-0.040349634,0.967840358,loss,ns,0.00000984,0.0000129,0.760957659,0.44726079,pos,ns,0.007767132,0.00378931,2.049748313,0.04123008,pos,ns,1.384785818,-0.000163104,0.000130314,-1.251619507,0.211652155,neg,ns,0.417001324,Gm28230,Gm28230_Intron,2,74732863,74732912,74732863,74732864,50,+,CGACCACGTGATTGGCGAAATAATTAATTCAGCACGTCCCTTAAGAAACA,"Intron (Hoxd3-203/Hoxd3, intron 1 of 2)",2,74726728,74747918,21191,1,Gm28230-201,6135,Gm28230-201;Hoxd3-203;Hoxd3-205;Hoxd3-202;Hoxd4-203;Hoxd4-201;Hoxd4-202,Gm28230;Hoxd3;Hoxd3;Hoxd3;Hoxd4;Hoxd4;Hoxd4,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,23,,NA,mapped to different genes,2,74732626,74733055,430,*,430,35,0.590697674,0.938923202,0.081395349,1.14E-23,CpGisland,TRUE,U13,Hc-P
22249,cg12560393,0.00000122,0.000000994,1.226263013,0.221030357,gain,ns,-0.00000128,0.00000169,-0.760938743,0.447272072,neg,ns,0.001173207,0.000494617,2.371951098,0.018304863,pos,ns,1.737433518,-0.0000573,0.000017,-3.370875416,0.000844141,neg,ns,0.971920027,A530016L24Rik,A530016L24Rik_Intron,12,112398584,112398633,112398584,112398585,50,+,CGATAATTAGTTGGTTTTTACTGTGTTCATTAAAAGCTTTTCTAATGACC,"Intron (E330035G20Rik-202/E330035G20Rik-202, intron 1 of 2)",12,112489448,112499927,10480,1,A530016L24Rik-201,-90815,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,319942,ENSMUSG00000043122,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10303,cg19306226,-0.0000171,0.00000466,-3.668461016,0.000287131,loss,ns,0.00000602,0.00000792,0.760824437,0.447340251,pos,ns,-0.004092622,0.002318932,-1.764873817,0.078569595,neg,ns,1.104745484,0.0000469,0.0000797,0.588679186,0.55650518,pos,ns,0.926471281,Gpc3,Gpc3_Intron,X,52609029,52609078,52609077,52609078,50,-,TCAGTTGAGCAACATGATCCCCAGTGAAATTCTTTCCAAATGATGTATCG,"Intron (A630012P03Rik-201/A630012P03Rik-201, intron 4 of 4)",20,52272426,52613921,341496,2,Gpc3-201,4843,Gpc3-201;Gpc3-202,Gpc3;Gpc3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,7,14734,ENSMUSG00000055653,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27915,cg06716519,0.00000652,0.00000425,1.536275408,0.125490839,gain,ns,-0.00000549,0.00000722,-0.76081696,0.447344711,neg,ns,0.004833902,0.002113777,2.286854529,0.022878132,pos,ns,1.640579443,-0.000181869,0.0000727,-2.501894493,0.012868139,neg,ns,0.507549988,Prox1,Prox1_Intron,1,190163699,190163748,190163699,190163700,50,-,CGGTTCACCTGTAAAAACATCTACGTGCTCCCTAGGACTGCATCTGTGGC,"Intron (Prox1-202/Prox1, intron 1 of 4)",1,190118035,190170714,52680,2,Prox1-202,6966,Prox1-202;Prox1-201;Prox1-203,Prox1;Prox1;Prox1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,59,19130,ENSMUSG00000010175,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13180,cg00027863,0.000000673,0.00000609,0.110601593,0.912003853,gain,ns,-0.00000787,0.0000103,-0.760743394,0.447388595,neg,ns,0.002088634,0.003030748,0.689147956,0.491245641,pos,ns,0.30870129,-0.000102251,0.000104227,-0.981040189,0.327337929,neg,ns,0.893466178,Senp3,Senp3_threeUTR,11,69673524,69673573,69673572,69673573,50,+,GCTCACACAGTGAGTTTGCAGTGACACAGCTCCTTGTAGATCTGCCGACG,3' UTR,11,69673115,69681846,8732,2,Senp3-201,8273,Eif4a1-204;Eif4a1-213;Eif4a1-202;Eif4a1-201;Eif4a1-207;Eif4a1-209;Eif4a1-210;Eif4a1-203;Eif4a1-212;Eif4a1-205;Senp3-201;Senp3-203;Senp3-202;Senp3-209;Senp3-206;Senp3-208;Senp3-207;Senp3-205;Senp3-204,Eif4a1;Eif4a1;Eif4a1;Eif4a1;Eif4a1;Eif4a1;Eif4a1;Eif4a1;Eif4a1;Eif4a1;Senp3;Senp3;Senp3;Senp3;Senp3;Senp3;Senp3;Senp3;Senp3,0;0;0;0;0;-2641;0;-1794;-2302;-2074;0;0;0;0;0;870;3374;4440;5622,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,2,80886,ENSMUSG00000005204,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1200,cg23440841,0.000000313,0.00000485,0.064516947,0.948600196,gain,ns,0.00000626,0.00000823,0.760717455,0.447404068,pos,ns,-0.001883392,0.002411642,-0.780958295,0.435422984,neg,ns,0.36108865,0.0000283,0.0000829,0.341100225,0.733259202,pos,ns,0.758984281,Bcor,Bcor_Exon,X,12055035,12055084,12055083,12055084,50,+,GATTTCCTTTCAACCTTTCCCAGTCGGCTGGGCTGAATTTGCACATCTCG,"Exon (Bcor-202/Bcor, exon 6 of 15)",20,12036740,12080553,43814,2,Bcor-202,25469,Bcor-202;Bcor-203;Bcor-204;Bcor-206;Bcor-201;Bcor-207;Bcor-205,Bcor;Bcor;Bcor;Bcor;Bcor;Bcor;Bcor,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,14,74,71458,ENSMUSG00000040363,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4368,cg09141006,-0.0000013,0.00000743,-0.175543404,0.860767276,loss,ns,-0.0000096,0.0000126,-0.760662029,0.447437133,neg,ns,0.009289258,0.003698514,2.511618942,0.012525974,pos,ns,1.902188481,-0.0000119,0.000127192,-0.093573787,0.925508181,neg,ns,0.890554192,Snd1,Snd1_Intron,6,28577106,28577155,28577106,28577107,50,+,CGGCTCCCTGTAGGATAATGAATTGTCATGCCTCTGCTGATTATCTAACA,"Intron (Snd1-203/Snd1, intron 9 of 16)",6,28480348,28877723,397376,1,Snd1-203,96758,Snd1-203;Snd1-201;Snd1-206;Snd1-211,Snd1;Snd1;Snd1;Snd1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,9,56463,ENSMUSG00000001424,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11129,cg18884120,0.0000207,0.00000239,8.674082952,2.39E-16,gain,yes,-0.00000308,0.00000405,-0.760652562,0.44744278,neg,ns,0.001279228,0.001187731,1.077034719,0.282302178,pos,ns,0.549285771,-0.000127355,0.0000408,-3.117936631,0.001992076,neg,ns,0.060817898,Pax9,Pax9_fiveUTR,12,56695619,56695668,56695619,56695620,50,-,CGCCCTGCCCTGCTCAGCCCAGCCCACGTTGCTGCTTAGATTGAAATGCA,Promoter (<=1kb),12,56695639,56712822,17184,1,Pax9-201,0,Pax9-203;Pax9-201;Pax9-202,Pax9;Pax9;Pax9,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,7,18511,ENSMUSG00000001497,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
25452,cg21857363,0.0000223,0.00000292,7.643945444,2.66E-13,gain,yes,-0.00000378,0.00000497,-0.760594543,0.447477394,neg,ns,0.004098548,0.001454904,2.817058111,0.005157581,pos,ns,2.287553932,-0.0000717,0.00005,-1.433516798,0.152718004,neg,ns,0.043934379,Snap25,Snap25_fiveUTR,2,136713449,136713498,136713449,136713450,50,-,CGGCCATCTTTGATGAGGGCAGAGCTCACGTTGCATTGAAGACGAAACCT,Promoter (<=1kb),2,136713453,136782428,68976,1,Snap25-201,0,Snap25-201;Snap25-203;Snap25-202,Snap25;Snap25;Snap25,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,9,20614,ENSMUSG00000027273,mapped to different genes,2,136713303,136713620,318,*,318,18,0.628930818,0.613899614,0.056603774,9.25E-10,CpGisland,TRUE,U13,Hc-P
13112,cg20613357,-0.0000233,0.00000737,-3.156595626,0.001753157,loss,ns,0.00000953,0.0000125,0.760473154,0.447549818,pos,ns,0.005005989,0.003670538,1.363829859,0.173610577,pos,ns,0.760423818,-0.000195139,0.000126229,-1.545903317,0.123148137,neg,ns,0.908082893,Tcf4,Tcf4_Intron,18,69500241,69500290,69500289,69500290,50,+,CTGATCGGCTCCTGGCATTCTGATGGCTAATTATGCATCGGAGAGCTTCG,"Intron (Tcf4-259/Tcf4, intron 5 of 6)",18,69343356,69564082,220727,1,Tcf4-259,156885,Tcf4-259;Tcf4-201;Tcf4-207;Tcf4-210;Tcf4-240;Tcf4-254;Tcf4-246;Tcf4-206;Tcf4-202;Tcf4-257;Tcf4-232;Tcf4-248;Tcf4-231;Tcf4-205;Tcf4-253;Tcf4-233;Tcf4-238;Tcf4-245;Tcf4-249;Tcf4-219;Tcf4-235;Tcf4-227;Tcf4-250;Tcf4-229;Tcf4-260;Tcf4-226;Tcf4-216;Tcf4-256,Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,42,66,21413,ENSMUSG00000053477,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
787,cg14091483,0.00000207,0.00000285,0.724945165,0.469032505,gain,ns,-0.00000369,0.00000485,-0.760467047,0.447553461,neg,ns,0.001816084,0.00142073,1.278274617,0.202108858,pos,ns,0.694414652,-0.0000885,0.0000489,-1.810601558,0.07117058,neg,ns,0.92612463,Wdr74,Wdr74_Exon,19,8739299,8739348,8739299,8739300,50,-,CGGCCAGTCCTAGAGACCACCTATGGAGAGTACCCACTAACAGCCATGAC,Promoter (<=1kb),19,8739341,8740617,1277,1,Wdr74-206,0,1700092M07Rik-201;1700092M07Rik-202;Stx5a-218;Stx5a-213;Stx5a-203;Stx5a-219;Stx5a-205;Stx5a-201;Stx5a-209;Stx5a-212;Stx5a-202;Stx5a-206;Stx5a-208;Stx5a-211;Stx5a-207;Wdr74-202;Wdr74-201;Wdr74-203;Wdr74-204;Wdr74-207;Wdr74-205;Wdr74-206;Wdr74-208,1700092M07Rik;1700092M07Rik;Stx5a;Stx5a;Stx5a;Stx5a;Stx5a;Stx5a;Stx5a;Stx5a;Stx5a;Stx5a;Stx5a;Stx5a;Stx5a;Wdr74;Wdr74;Wdr74;Wdr74;Wdr74;Wdr74;Wdr74;Wdr74,-1370;-1414;0;0;0;0;0;0;0;0;0;0;0;0;-3512;0;0;0;3418;0;0;0;-320,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,107071,ENSMUSG00000042729,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13251,cg19293236,0.0000138,0.00000868,1.584978432,0.113990774,gain,ns,0.0000112,0.0000147,0.760432221,0.447574241,pos,ns,0.006889523,0.004317897,1.595573601,0.111602942,pos,ns,0.952324358,-0.00026193,0.000148492,-1.763931385,0.078728463,neg,ns,0.532894129,Gm18745,Gm18745_Intergenic_upstream,9,69867195,69867244,69867195,69867196,50,+,CGTGCTACCAGACAGCAAATCTTGACCTTTAGGAGTTCAGAGATTAGATT,Distal Intergenic,9,69792604,69793151,548,2,Gm18745-201,-74044,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,6,100417660,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25659,cg26819920,-0.00000235,0.00000442,-0.532024493,0.595090103,loss,ns,0.00000571,0.00000751,0.760312831,0.447645481,pos,ns,-0.00406554,0.002199552,-1.848349475,0.06550403,neg,ns,1.183731978,0.0000196,0.0000756,0.258745711,0.796003165,pos,ns,0.87018748,1110002E22Rik,1110002E22Rik_Exon,3,138066749,138066798,138066797,138066798,50,-,CCATGCAAAGAAATTCATTGCTGTACCTGCTCGCCTGCAAACCAGGTGCG,"Exon (1110002E22Rik-201/1110002E22Rik, exon 1 of 2)",3,138065052,138081506,16455,1,1110002E22Rik-201,1697,1110002E22Rik-201;1110002E22Rik-202;Gm5105-201,1110002E22Rik;1110002E22Rik;Gm5105,0;-4799;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,7,102634333,ENSMUSG00000090066,conserved gene and region,3,138066780,138066910,131,*,131,9,0.648854962,0.660134379,0.06870229,0.00000851,CpGisland,TRUE,NA,NRS
23293,cg03666004,0.0000102,0.00000263,3.859856865,0.000138077,gain,ns,-0.0000034,0.00000447,-0.760275313,0.447667869,neg,ns,0.002814065,0.001310894,2.146676661,0.032594692,pos,ns,1.486853113,-0.000123794,0.0000451,-2.745995313,0.006385159,neg,ns,0.936858912,Eri3,Eri3_Intron,4,117651885,117651934,117651933,117651934,50,-,GTTAATGGCCCTCGCACCAAAGAGACAGCTTTAATGAGCTTCAGCTGGCG,"Intron (Eri3-201/Eri3, intron 8 of 8)",4,117550365,117674297,123933,1,Eri3-201,101520,Eri3-201;Eri3-206;Eri3-203,Eri3;Eri3;Eri3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,82,97,140546,ENSMUSG00000033423,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26813,cg11718902,-0.0000247,0.00000991,-2.488547519,0.013351289,loss,ns,-0.0000128,0.0000168,-0.760193876,0.447716467,neg,ns,-0.01036424,0.004930607,-2.10202098,0.036357938,neg,ns,1.43940076,0.000600051,0.000169563,3.538802129,0.0004635,pos,ns,0.305921601,Rgl1,Rgl1_Exon,1,152623875,152623924,152623923,152623924,50,+,GACATGGTAAACAGCTCCTTCCTCTACCTCTTCACCCCAGTCCTGAATCG,"Exon (Rgl1-203/Rgl1, exon 3 of 19)",1,152516760,152766305,249546,2,Rgl1-203,142381,Rgl1-203;Rgl1-201;Rgl1-202;Rgl1-205,Rgl1;Rgl1;Rgl1;Rgl1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,19731,ENSMUSG00000026482,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21139,cg18543660,0.000065,0.0000209,3.103244225,0.002090498,gain,ns,-0.000027,0.0000356,-0.760169247,0.447731165,neg,ns,0.024572569,0.010417109,2.358866515,0.018951023,pos,ns,1.722367336,-0.001523004,0.000358244,-4.251310496,0.0000282,neg,ns,0.446623955,Gm17304,Gm17304_Intron,5,106559688,106559737,106559736,106559737,50,+,TCTAATAACCAGAAAATCCCCTCTGTGGGTCCAAAGGCTCTGGCGAATCG,"Intron (Gm28050-202/Gm28050-202, intron 1 of 2)",5,106609098,106609201,104,1,Gm17304-201,-49361,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,35,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
25638,cg18599609,0.00000188,0.00000383,0.489866979,0.624574515,gain,ns,0.00000495,0.00000651,0.760103418,0.447770453,pos,ns,0.001271183,0.00190723,0.666507325,0.505582607,pos,ns,0.296207875,0.0000189,0.0000656,0.288725837,0.772984159,pos,ns,0.900263631,Rap1gap,Rap1gap_Exon,4,137717979,137718028,137717979,137717980,50,-,CGCAACAAGGAGATCATGTTTCACGTGTCCACCAAGCTGCCATACACGGA,"Exon (Rap1gap-203/Rap1gap, exon 13 of 25)",4,137680753,137729861,49109,1,Rap1gap-203,37226,Rap1gap-207;Rap1gap-213;Rap1gap-211;Rap1gap-203;Rap1gap-201;Rap1gap-206;Rap1gap-202;Rap1gap-208,Rap1gap;Rap1gap;Rap1gap;Rap1gap;Rap1gap;Rap1gap;Rap1gap;Rap1gap,53253;37226;0;0;0;30561;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,Exon,5,5,110351,ENSMUSG00000041351,conserved gene and region,4,137717919,137718036,118,*,118,9,0.576271186,0.91948052,0.076271186,0.00000366,CpGisland,TRUE,U11,Tr-P
14387,cg12900023,0.0000483,0.0000182,2.650806405,0.008442385,gain,ns,-0.0000235,0.000031,-0.760099944,0.447772526,neg,ns,0.019518655,0.009072203,2.151479011,0.032210694,pos,ns,1.491999913,-0.001006178,0.000311992,-3.22500821,0.001394111,neg,ns,0.400988534,Wdr81,Wdr81_Intron,11,75443978,75444027,75443978,75443979,50,-,CGGACAGGGCCTGACCCCTGATCCTCCAAGCAAGACAAATATGGACAAGG,"Intron (Wdr81-204/Wdr81, intron 9 of 9)",11,75440944,75454717,13774,2,Wdr81-204,10690,Serpinf2-201;Serpinf2-203;Serpinf2-204;Wdr81-204;Wdr81-201;Wdr81-202;Wdr81-203,Serpinf2;Serpinf2;Serpinf2;Wdr81;Wdr81;Wdr81;Wdr81,-4477;-4387;-4400;0;0;0;5753,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,192652,ENSMUSG00000045374,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26760,cg04326942,0.0000156,0.00000737,2.116320491,0.0351143,gain,ns,-0.00000952,0.0000125,-0.760055069,0.447799309,neg,ns,-0.000195054,0.003668862,-0.053164614,0.957634993,neg,ns,0.018799993,0.0000612,0.000126172,0.48535273,0.627768984,pos,ns,0.598525446,Scrt2,Scrt2_threeUTR,2,152095766,152095815,152095766,152095767,50,+,CGCAATTCAGGGATATTAAAGGGACTTTGGCCACTCACCATCGCCTCTAG,3' UTR,2,152081529,152095802,14274,1,Scrt2-201,14237,Scrt2-201,Scrt2,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,10,545474,ENSMUSG00000060257,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
6497,cg14918356,-0.000000933,0.00000261,-0.357832703,0.72071203,loss,ns,0.00000337,0.00000443,0.759942839,0.447866295,pos,ns,0.001174868,0.001298055,0.905098569,0.366116051,pos,ns,0.43638123,0.0000832,0.0000446,1.863122026,0.063390653,pos,ns,0.927092033,Zfp536,Zfp536_Intron,7,37515727,37515776,37515775,37515776,50,-,CAGCAATACATTTGGGCCATTTCCAAGTCAATTAAGGAAAACGACATTCG,"Intron (Zfp536-211/Zfp536, intron 1 of 3)",7,37318024,37568390,250367,2,Zfp536-211,52614,Zfp536-211;Zfp536-202;Zfp536-201;Zfp536-203;Zfp536-206,Zfp536;Zfp536;Zfp536;Zfp536;Zfp536,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,73,112,243937,ENSMUSG00000043456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10635,cg12448080,-0.0000735,0.00000997,-7.374922243,1.51E-12,loss,yes,0.0000129,0.0000169,0.759919709,0.447880102,pos,ns,-0.008321558,0.004961858,-1.677105156,0.094529905,neg,ns,1.024430777,0.0000643,0.000170638,0.376652864,0.706689272,pos,ns,0.61589223,Slc7a8,Slc7a8_Exon,14,54735812,54735861,54735812,54735813,50,+,CGAGGCCGATGTCAGGTTCCTGGAAATTCTCAAATGCATTCTTTGGCTCC,"Exon (Slc7a8-201/Slc7a8, exon 5 of 11)",14,54722209,54781930,59722,2,Slc7a8-201,46069,Slc7a8-201;Slc7a8-202,Slc7a8;Slc7a8,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,50934,ENSMUSG00000022180,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27550,cg01204422,-0.000000759,0.00000164,-0.463755489,0.643148396,loss,ns,0.00000211,0.00000278,0.759891081,0.44789719,pos,ns,0.000906037,0.000814053,1.112994482,0.266573091,pos,ns,0.574183692,-0.0000711,0.000028,-2.54100745,0.011540586,neg,ns,0.958906262,Tshz2,Tshz2_Intron,2,169811761,169811810,169811809,169811810,50,-,ATTTTGTACAGCACATTTGCTTTATGGCTACAATTAAGTTAGATGTGCCG,"Intron (Tshz2-202/Tshz2, intron 1 of 2)",2,169633013,169913093,280081,1,Tshz2-202,178748,Tshz2-202;Tshz2-201,Tshz2;Tshz2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,21,30,228911,ENSMUSG00000047907,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16448,cg17651763,0.00000208,0.00000346,0.601888411,0.547688357,gain,ns,0.00000446,0.00000588,0.759681535,0.448022281,pos,ns,0.004782746,0.001721217,2.778700719,0.005790648,pos,ns,2.237272845,-0.000106083,0.0000592,-1.792172666,0.074080373,neg,ns,0.897623669,Usp32,Usp32_threeUTR,11,85010103,85010152,85010103,85010104,50,-,CGATTCTTCTGAGATGACAGGAAATACAGTTCTGTCCTCATCTGTATGTA,3' UTR,11,84984442,85140038,155597,2,Usp32-202,129886,Usp32-202;Usp32-201,Usp32;Usp32,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,2,237898,ENSMUSG00000000804,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11007,cg11885473,0.0000671,0.00000833,8.045263015,1.85E-14,gain,yes,-0.0000108,0.0000142,-0.759611805,0.448063912,neg,ns,0.011938136,0.00414808,2.877990396,0.004280164,pos,ns,2.368539608,-0.000399707,0.000142652,-2.801969244,0.00539871,neg,ns,0.162573148,Gm47104,Gm47104_Promoter,13,56208633,56208682,56208681,56208682,50,+,AGGGGCCCCTTTCACAGAGGGCTAATTGCGTTTCAGACCACCAGTATTCG,Promoter (5-6kb),13,56202231,56202937,707,2,Gm47104-201,-5696,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,6,6,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
7916,cg21006133,-0.00000303,0.0000045,-0.673366206,0.501216041,loss,ns,0.00000581,0.00000765,0.759580278,0.448082735,pos,ns,-0.000524785,0.002239797,-0.234300351,0.81490648,neg,ns,0.088892229,0.0000541,0.000077,0.702323669,0.48300434,pos,ns,0.925708925,Hif1an,Hif1an_Intron,19,44632728,44632777,44632776,44632777,50,+,GACCAAAGAACATTTTGAAGGTCAGTTTCATCTGTGAGCTCCTTCAAGCG,"Intron (Gm35460-201/Gm35460-201, intron 3 of 6)",19,44562850,44576274,13425,1,Hif1an-201,69878,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,31,319594,ENSMUSG00000036450,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15279,cg26669109,-0.0000104,0.00000415,-2.499754861,0.012944531,loss,ns,0.00000536,0.00000705,0.759542159,0.448105495,pos,ns,0.002209666,0.002065966,1.069555942,0.285651318,pos,ns,0.544163768,-0.000101255,0.000071,-1.425153904,0.155118744,neg,ns,0.86681819,Actn1,Actn1_Exon,12,80170679,80170728,80170679,80170680,50,-,CGAGTACCTGGGGGTCGTTGCCAATATCATAACCCAAGCTGATGAGGCAG,"Exon (Actn1-201/Actn1, exon 19 of 21)",12,80167547,80260371,92825,2,Actn1-201,89643,Actn1-201;Actn1-206;Actn1-202;Actn1-205,Actn1;Actn1;Actn1;Actn1,0;0;0;-528,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,10,109711,ENSMUSG00000015143,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16997,cg02159860,0.0000051,0.00000529,0.964186562,0.335703928,gain,ns,-0.00000683,0.00000899,-0.759503801,0.448128398,neg,ns,-0.000896082,0.002634015,-0.340196157,0.733939213,neg,ns,0.134339908,0.0000136,0.0000906,0.150409231,0.880539576,pos,ns,0.898561181,Zfp423,Zfp423_Intron,8,87795022,87795071,87795070,87795071,50,+,ACTCAAATTAGAAACAGCTGTTTGCTAATTCATGCAGTGATGTTTTGTCG,"Intron (Zfp423-203/Zfp423, intron 1 of 5)",8,87661810,87804439,142630,2,Zfp423-203,9368,Zfp423-203;Zfp423-202;Zfp423-201;Zfp423-207;Zfp423-206;Zfp423-205;Zfp423-204,Zfp423;Zfp423;Zfp423;Zfp423;Zfp423;Zfp423;Zfp423,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,42,53,94187,ENSMUSG00000045333,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11440,cg10070260,-0.00000501,0.000011,-0.456435696,0.648396324,loss,ns,0.0000142,0.0000186,0.759381948,0.448201159,pos,ns,0.004866959,0.005459229,0.891510386,0.373346855,pos,ns,0.427887503,-0.0000111,0.000187742,-0.059268423,0.952776499,neg,ns,0.230817868,Islr2,Islr2_fiveUTR,9,58202225,58202274,58202273,58202274,50,+,CCCCGAAGCCACGTTCAACATGATGCATAATTGATAGTGTTAGCAGAGCG,Promoter (<=1kb),9,58199514,58202243,2730,2,Islr2-212,0,1600029O15Rik-202;Islr-203;Islr2-202;Islr2-204;Islr2-203;Islr2-205;Islr2-201;Islr2-210;Islr2-208;Islr2-214;Islr2-212;Islr2-216;Islr2-209;Islr2-211;Islr2-213;Islr2-217;Islr2-206;Islr2-207;Islr2-215,1600029O15Rik;Islr;Islr2;Islr2;Islr2;Islr2;Islr2;Islr2;Islr2;Islr2;Islr2;Islr2;Islr2;Islr2;Islr2;Islr2;Islr2;Islr2;Islr2,-623;0;-510;-426;0;0;0;0;-426;-1653;0;0;0;0;-657;0;0;-39;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,1,320563,ENSMUSG00000051243,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
4523,cg23782533,-0.00000722,0.00000202,-3.573399167,0.000408457,loss,ns,0.00000261,0.00000343,0.759318982,0.44823876,pos,ns,0.00062403,0.001005613,0.620546345,0.535354087,pos,ns,0.271358877,-0.0000604,0.0000346,-1.745492871,0.081889877,neg,ns,0.953948031,Ccdc88a,Ccdc88a_Exon,11,29447944,29447993,29447992,29447993,50,-,CATGCCTCTTCATCTGCACAGTCACCCTGTGGTTCTCCAGGCATGAAGCG,"Exon (Ccdc88a-201/Ccdc88a, exon 8 of 32)",11,29373658,29510808,137151,1,Ccdc88a-201,74286,Ccdc88a-201;Ccdc88a-208,Ccdc88a;Ccdc88a,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,6,108686,ENSMUSG00000032740,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13403,cg12280054,0.000181199,0.0000175,10.3703666,7.92E-22,gain,yes,-0.0000225,0.0000297,-0.759307977,0.448245332,neg,ns,0.016663395,0.008696354,1.916135796,0.056267286,pos,ns,1.249744036,-0.000498077,0.000299067,-1.665436862,0.096835834,neg,ns,0.083436072,Nr2f2,Nr2f2_Intron,7,70361757,70361806,70361805,70361806,50,+,GAGCTCTCTATATAGTGAACTTTGACACGACTGCTGCAACTTAGCGCACG,"Intron (Nr2f2-202/Nr2f2, intron 1 of 2)",7,70354439,70366735,12297,2,Nr2f2-202,4929,Nr2f2-201;Nr2f2-202;Nr2f2-205;Nr2f2-204;Nr2f2-206,Nr2f2;Nr2f2;Nr2f2;Nr2f2;Nr2f2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,69,11819,ENSMUSG00000030551,conserved gene and region,7,70361690,70362245,556,*,556,73,0.701438849,1.072168216,0.131294964,3.37E-65,CpGisland,TRUE,U2,Pr-W
18192,cg09689442,0.00000102,0.00000272,0.375106196,0.707837994,gain,ns,0.00000351,0.00000462,0.759037376,0.448406946,pos,ns,0.002624334,0.001354731,1.937162114,0.053633793,pos,ns,1.270561487,-0.000137887,0.0000466,-2.959635127,0.00331748,neg,ns,0.945086907,Ap3b1,Ap3b1_Intron,13,94423937,94423986,94423937,94423938,50,+,CGACATTTTATAAATAAAGCTGATGCAGGAAAATGGAAATTAAACCTTTT,"Intron (Ap3b1-201/Ap3b1, intron 7 of 26)",13,94358960,94566317,207358,1,Ap3b1-201,64977,Ap3b1-201,Ap3b1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,55,11774,ENSMUSG00000021686,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17225,cg05082095,-0.00000344,0.00000186,-1.850173808,0.065239921,loss,ns,0.0000024,0.00000316,0.758656085,0.448634726,pos,ns,0.001798685,0.000925953,1.942523553,0.052979083,pos,ns,1.275895565,-0.0000445,0.0000318,-1.396394613,0.163594725,neg,ns,0.065723519,Efna1,Efna1_Promoter,3,89280174,89280223,89280174,89280175,50,-,CGGCTGTTTGTTTTTGTTGGGTTTGTCAATGTTGTCTTTGTTCTGGAGAT,Promoter (<=1kb),3,89271736,89281142,9407,2,Efna1-202,919,Efna1-201;Efna1-202;Efna1-203,Efna1;Efna1;Efna1,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,1,3,13636,ENSMUSG00000027954,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
7463,cg17348151,0.0000056,0.00000403,1.389685849,0.165621492,gain,ns,-0.0000052,0.00000685,-0.758653906,0.448636029,neg,ns,-0.000535948,0.002006733,-0.267075034,0.789588972,neg,ns,0.102598926,-0.0000447,0.000069,-0.648271276,0.517289389,neg,ns,0.080750503,Pou3f3,Pou3f3_threeUTR,1,42699910,42699959,42699910,42699911,50,+,CGGCAATATAGAATTGTTAGATCCGTTGTTGATCTAAAAATATTTGCTTT,3' UTR,1,42694925,42703176,8252,1,Pou3f3-202,4985,Pou3f3-202;Pou3f3-201,Pou3f3;Pou3f3,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,5,37,18993,ENSMUSG00000045515,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
25011,cg00738572,-0.00000457,0.00000773,-0.590986211,0.554960299,loss,ns,-0.00000996,0.0000131,-0.75862926,0.448650754,neg,ns,-0.006840983,0.003846122,-1.778670612,0.076273699,neg,ns,1.11762519,0.000164661,0.000132268,1.2449073,0.214106095,pos,ns,0.7958274,Fgfr2,Fgfr2_Intron,7,131497701,131497750,131497749,131497750,50,+,GAACATTTTGCAATTTGTAACCTGGCCCATATCTATATTTCAGGCTGACG,"Intron (Fgfr2-217/Fgfr2, intron 2 of 6)",7,130162451,133123350,2960900,2,Fgfr2-217,1625600,Fgfr2-217;Gm45105-201,Fgfr2;Gm45105,0;-3798,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,58,79,14183,ENSMUSG00000030849,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4839,cg25793035,0.000000261,0.00000246,0.105896123,0.91573326,gain,ns,-0.00000317,0.00000418,-0.758617176,0.448657974,neg,ns,0.001044062,0.00122452,0.85262997,0.394522791,pos,ns,0.403927903,0.0000221,0.0000421,0.52551411,0.599601527,pos,ns,0.864015551,Phc3,Phc3_threeUTR,3,30936330,30936379,30936330,30936331,50,+,CGCAACAGTCTGTGGAGGAGGAAGAGTCTGAAATGGCAACTGGACCAAAG,3' UTR,3,30899371,30969401,70031,2,Phc3-209,33022,Phc3-209;Phc3-201;Phc3-204;Phc3-208;Phc3-202;Phc3-206;Phc3-210;Phc3-205;Phc3-203,Phc3;Phc3;Phc3;Phc3;Phc3;Phc3;Phc3;Phc3;Phc3,0;0;0;0;0;0;0;-3219;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,8,241915,ENSMUSG00000037652,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19930,cg04103301,0.00000109,0.00000189,0.577134896,0.564267214,gain,ns,-0.00000244,0.00000321,-0.758603917,0.448665897,neg,ns,0.000160626,0.000941604,0.170587589,0.864659339,pos,ns,0.063154963,-0.00000833,0.0000324,-0.257372569,0.797061929,neg,ns,0.96863361,Ogt,Ogt_Exon,X,101655373,101655422,101655421,101655422,50,+,TGGCAGAACTGAACATGGTGGTTTGCACTTGGGTTCTGGTGGCGCAGGCG,"Exon (Ogt-203/Ogt, exon 1 of 17)",20,101640060,101682940,42881,1,Ogt-202,15313,Ogt-202;Ogt-206;Ogt-201;Ogt-205;Ogt-204;Ogt-207;Ogt-203,Ogt;Ogt;Ogt;Ogt;Ogt;Ogt;Ogt,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,32,33,108155,ENSMUSG00000034160,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19086,cg11448454,-0.00000423,0.00000171,-2.474812152,0.013865255,loss,ns,-0.0000022,0.0000029,-0.758535773,0.448706614,neg,ns,0.001159021,0.000850639,1.362529045,0.174020023,pos,ns,0.759400778,-0.0000629,0.0000293,-2.151858211,0.03218054,neg,ns,0.056414191,Ppp1r1b,Ppp1r1b_Promoter,11,98339256,98339305,98339256,98339257,50,+,CGAGTAATAAATCATTGGATGGGAGCGAGGAAGCTGGAGACCTGGCCCAT,Promoter (9-10kb),11,98348404,98357796,9393,1,Ppp1r1b-201,-9099,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,16,16,19049,ENSMUSG00000061718,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
5654,cg14556101,-0.000000754,0.00000151,-0.500700546,0.616937187,loss,ns,0.00000194,0.00000256,0.758414793,0.448778906,pos,ns,0.000220417,0.000749297,0.294164887,0.768828777,pos,ns,0.114170369,-0.0000178,0.0000258,-0.68987603,0.490788264,neg,ns,0.962193359,Sox2,Sox2_Intron,3,34504276,34504325,34504276,34504277,50,+,CGGAATGCATAATTAATTACCCAGCTTGCTCTAATTAGGGATGAATAAGT,"Intron (Sox2ot-204/Sox2ot-204, intron 2 of 3)",3,34650405,34652461,2057,1,Sox2-201,-146080,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,34,62,20674,ENSMUSG00000074637,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20270,cg01012005.1,0.000000503,0.000000416,1.208930044,0.22761098,gain,ns,0.000000536,0.000000707,0.758373986,0.448803292,pos,ns,0.000062,0.000207176,0.299185375,0.764999085,pos,ns,0.116339084,-0.000000503,0.00000712,-0.070601455,0.943760475,neg,ns,0.011466358,Hoxc5,Hoxc5_Exon,15,102981660,102981709,102981660,102981661,50,-,CGACGGGGCCCATCAGTAACTATTACGTGGACTCGCTCATCTCTCACGAC,"Exon (Hoxc9-202/Hoxc9, exon 2 of 2)",15,102967443,103015676,48234,1,Hoxc5-202,14217,Hoxc5-202;Hoxc9-202;Hoxc9-201,Hoxc5;Hoxc9;Hoxc9,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,72,134,15424,ENSMUSG00000022485,conserved gene and region,15,102981651,102982178,528,*,528,70,0.696969697,1.109010712,0.132575758,6.92E-63,CpGisland,TRUE,U3,Pr-B
1928,cg02445202,-0.00000375,0.00000155,-2.417814339,0.016190447,loss,ns,0.000002,0.00000263,0.758349715,0.448817797,pos,ns,0.001663625,0.000771494,2.156368225,0.031823759,pos,ns,1.497248527,-0.0000613,0.0000265,-2.310102405,0.021539009,neg,ns,0.951328176,Rarb,Rarb_threeUTR,14,16434182,16434231,16434182,16434183,50,-,CGGAGATCTGTGATTTTCATTAAGATCTTTGGAAACATGTGAGGCTTGCT,3' UTR,14,16430839,16575543,144705,2,Rarb-201,141312,Rarb-201;Rarb-207;Rarb-202;Top2b-201,Rarb;Rarb;Rarb;Top2b,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,16,218772,ENSMUSG00000017491,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3748,cg08478376,-0.0000111,0.00000641,-1.735023031,0.083730583,loss,ns,0.00000826,0.0000109,0.758281133,0.448858784,pos,ns,0.006571403,0.003191088,2.059298445,0.04030056,pos,ns,1.39468892,0.000016,0.000109741,0.14624377,0.883824006,pos,ns,0.24234908,Gm19340,Gm19340_Intergenic_upstream,12,25251514,25251563,25251514,25251515,50,+,CGTTAAGGGGAAGTATTTGTCATCTCAGCACCTGGTTTCAGGAACAAAGT,Distal Intergenic,12,25282595,25282939,345,1,Gm19340-201,-31032,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,2,100502727,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
27847,cg11091266,-0.00000411,0.00000357,-1.150876974,0.250669782,loss,ns,-0.0000046,0.00000607,-0.758185059,0.448916204,neg,ns,0.001772395,0.001779191,0.996180176,0.319939547,pos,ns,0.494932074,-0.000148941,0.0000612,-2.434221732,0.015488159,neg,ns,0.94730093,Ush2a,Ush2a_Exon,1,188267050,188267099,188267050,188267051,50,-,CGCACAGTAAATGGTTTGCAACCTCCAATAAAAGTAATGACACTGGGGAG,"Exon (Ush2a-205/Ush2a, exon 2 of 5)",1,188262023,188357520,95498,1,Ush2a-205,5027,Ush2a-205;Ush2a-202;Ush2a-201,Ush2a;Ush2a;Ush2a,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,36,22283,ENSMUSG00000026609,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21102,cg03480718,0.0000343,0.00000592,5.79088937,1.72E-08,gain,yes,0.00000762,0.00001,0.758113669,0.448958875,pos,ns,0.007264149,0.002944296,2.46719378,0.014157833,pos,ns,1.849003226,-0.0000268,0.000101254,-0.264559627,0.791524533,neg,ns,0.071034917,Barhl2,Barhl2_Promoter,5,106464970,106465019,106464970,106464971,50,-,CGGTTAGCGGCACTAATTAGGCCACATTAAAACCGTAGTGTGTCCCTAAT,Promoter (6-7kb),5,106452523,106458166,5644,2,Barhl2-201,-6853,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,8,27,104382,ENSMUSG00000034384,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
21652,cg19615265,-0.00000701,0.00000301,-2.332920851,0.020291817,loss,ns,-0.00000387,0.00000511,-0.758110799,0.44896059,neg,ns,0.000632444,0.001496255,0.422684493,0.672818509,pos,ns,0.17210207,-0.0000795,0.0000515,-1.545536388,0.123236786,neg,ns,0.956420753,Gm13914,Gm13914_Intergenic_upstream,2,108789454,108789503,108789454,108789455,50,+,CGGGCTGTCTCTTAATCAAATGATATTTTTTGAAGTGTTTCCTCACTGGA,Distal Intergenic,2,108733212,108734202,991,2,Gm13914-201,-55252,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,623003,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10967,cg00289591,-0.000000857,0.00000103,-0.829713842,0.407339055,loss,ns,0.00000133,0.00000175,0.757677072,0.449219882,pos,ns,-0.000131546,0.000513793,-0.256028986,0.798098265,neg,ns,0.097943633,0.00000369,0.0000177,0.20869746,0.834821483,pos,ns,0.971790367,Tcf7l2,Tcf7l2_Exon,19,55926670,55926719,55926718,55926719,50,-,CCTTATGCTAACAGATGCAAATACTCCAAAGAAGTGTCGGGCACTGTTCG,"Exon (Tcf7l2-213/Tcf7l2, exon 13 of 14)",19,55741820,55933229,191410,1,Tcf7l2-213,184850,Tcf7l2-213;Tcf7l2-201;Tcf7l2-208;Tcf7l2-211;Tcf7l2-212;Tcf7l2-222;Tcf7l2-215;Tcf7l2-207;Tcf7l2-202;Tcf7l2-209;Tcf7l2-210;Tcf7l2-203,Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,88,21416,ENSMUSG00000024985,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3642,cg23945573,0.0000056,0.0000058,0.966030582,0.334781891,gain,ns,-0.00000746,0.00000985,-0.757213739,0.449496968,neg,ns,-0.005062219,0.002885167,-1.754567508,0.080321269,neg,ns,1.095169441,-0.0000228,0.0000992,-0.23015578,0.818122522,neg,ns,0.808653766,Erfl,Erfl_Intron,7,24939338,24939387,24939338,24939339,50,+,CGCCATCGATCAGATGGGATGAGAGCAATAAATTATTGTGACAAGATGCA,"Intron (Erfl-201/Erfl, intron 1 of 5)",7,24927445,24944494,17050,2,Erfl-201,5107,Erfl-201,Erfl,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,36,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13718,cg10614795,-0.00000225,0.00000137,-1.649191197,0.100121404,loss,ns,0.00000176,0.00000232,0.757023185,0.449610953,pos,ns,0.001917635,0.00067997,2.820176896,0.005108978,pos,ns,2.291666003,-0.0000585,0.0000234,-2.499700754,0.012946468,neg,ns,0.9695258,Mctp2,Mctp2_Intron,7,72231394,72231443,72231442,72231443,50,-,GGCATCTTGACAGCTACATAATGTTCAAACTGTTTCACGGGTGAATGGCG,"Intron (Mctp2-201/Mctp2, intron 4 of 22)",7,72077830,72306608,228779,2,Mctp2-201,75165,Mctp2-201;Mctp2-205,Mctp2;Mctp2,0;-2034,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,5,244049,ENSMUSG00000032776,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7774,cg25667790,-0.00000279,0.00000303,-0.919948575,0.358314924,loss,ns,0.00000389,0.00000515,0.756897794,0.449685968,pos,ns,0.000752151,0.001507367,0.498983514,0.618144896,pos,ns,0.208909712,0.000028,0.0000518,0.53933306,0.590044205,pos,ns,0.921148881,Sidt1,Sidt1_Exon,16,44259512,44259561,44259512,44259513,50,+,CGGGTCTGATAGAGCTTCAGCATGCACAGGCCAGCGATCATGTACATGAA,"Exon (Sidt1-204/Sidt1, exon 8 of 15)",16,44240180,44269532,29353,2,Sidt1-204,9971,Sidt1-204;Sidt1-205;Sidt1-201,Sidt1;Sidt1;Sidt1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,320007,ENSMUSG00000022696,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17893,cg13744172,0.0000313,0.00000544,5.764173991,1.98E-08,gain,yes,-0.00000699,0.00000924,-0.756863918,0.449706235,neg,ns,0.004994932,0.002706783,1.845339315,0.065941749,pos,ns,1.180839536,-0.000121845,0.0000931,-1.308949013,0.191521085,neg,ns,0.10447161,Irx5,Irx5_Intron,8,92365685,92365734,92365685,92365686,50,-,CGCCTGATGGATGCAAATGTAAATGTGCACTTATTTAATTGGATCAGGCC,"Intron (Irx5-202/Irx5, intron 4 of 4)",8,92357625,92376286,18662,1,Irx5-202,8060,Irx5-202;Irx5-201,Irx5;Irx5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,30,54352,ENSMUSG00000031737,conserved gene and region,8,92365567,92365686,120,*,120,12,0.625,1.07946027,0.1,1.82E-09,CpGisland,TRUE,U13,Hc-P
19492,cg24266374,0.00000463,0.00000655,0.706222886,0.48057996,gain,ns,0.00000843,0.0000111,0.756862996,0.449706787,pos,ns,-0.00588754,0.003261642,-1.805084676,0.072031615,neg,ns,1.142476848,0.00026505,0.000112168,2.362983476,0.018745586,pos,ns,0.826396319,Gm12684,Gm12684_Intergenic_upstream,4,99444142,99444191,99444190,99444191,50,+,TGAAGGGTAAGACCACTTAAAGGAAGGCCAATAAGCCCTTGCGCTGCTCG,Distal Intergenic,4,99430256,99431254,999,2,Gm12684-201,-12888,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,8,665212,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20040,cg00411555,-0.0000012,0.0000165,-0.073096037,0.941776835,loss,ns,0.0000212,0.000028,0.756741939,0.449779218,pos,ns,0.015626326,0.008196131,1.906549103,0.057503427,pos,ns,1.240306274,-0.000394056,0.000281864,-1.398033465,0.163102482,neg,ns,0.863261865,Ubtf,Ubtf_threeUTR,11,102305986,102306035,102305986,102305987,50,-,CGAGATCGGTAGGAAACGTCTCGTTGACAGCTCAGAGCTTAAAAAAAAAT,3' UTR,11,102304560,102319096,14537,2,Ubtf-210,13061,Ubtf-210;Ubtf-213;Ubtf-202;Ubtf-203;Ubtf-204;Ubtf-201;Ubtf-205;Ubtf-206;Ubtf-209;Ubtf-212;Ubtf-211,Ubtf;Ubtf;Ubtf;Ubtf;Ubtf;Ubtf;Ubtf;Ubtf;Ubtf;Ubtf;Ubtf,0;0;0;0;0;0;0;0;0;3405;3873,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,8,21429,ENSMUSG00000020923,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
478,cg10619211,-0.0000582,0.0000116,-5.024241921,0.000000855,loss,yes,-0.0000149,0.0000197,-0.75674035,0.449780168,neg,ns,-0.016516858,0.005764912,-2.865066769,0.004454011,neg,ns,2.351248701,-0.0000919,0.000198255,-0.463314684,0.643463929,neg,ns,0.628032113,Dab2,Dab2_Intron,15,6384191,6384240,6384239,6384240,50,-,TAAGAGATTACTTTAATAATAAACCATGCATTCTTCAGCAAGCCATCACG,"Intron (Dab2-207/Dab2, intron 1 of 5)",15,6299788,6435520,135733,1,Dab2-207,84403,Dab2-207;Dab2-201;Dab2-205;Dab2-209;Dab2-202;Dab2-204;Dab2-203;Dab2-211;Dab2-208;Dab2-206,Dab2;Dab2;Dab2;Dab2;Dab2;Dab2;Dab2;Dab2;Dab2;Dab2,0;0;0;0;0;-2508;-2536;-2537;-2539;-4810,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,3,13132,ENSMUSG00000022150,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12125,cg11654048,0.000130831,0.0000213,6.129119792,2.68E-09,gain,yes,0.0000274,0.0000363,0.756703549,0.449802188,pos,ns,0.090260783,0.010624029,8.495908837,8.35E-16,pos,yes,15.07850607,-0.002091208,0.000365359,-5.723700104,2.46E-08,neg,yes,0.620971907,Zfp618,Zfp618_Intron,4,63057133,63057182,63057181,63057182,50,+,AATTTTTGATTGATTTGCTTAGAATTATGGGCGCCCCAGCATTCTTTCCG,"Intron (Zfp618-201/Zfp618, intron 2 of 11)",4,62965573,63115748,150176,1,Zfp618-201,91560,Zfp618-201;Zfp618-203;Zfp618-202,Zfp618;Zfp618;Zfp618,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,12,72701,ENSMUSG00000028358,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27204,cg15917184,-0.000002,0.00000497,-0.402572201,0.687540423,loss,ns,0.00000638,0.00000844,0.756695344,0.449807098,pos,ns,-0.002813329,0.002471622,-1.13825208,0.255894143,neg,ns,0.591939654,0.0000735,0.000085,0.864875524,0.387775878,pos,ns,0.925593657,Top1,Top1_Intergenic_upstream,2,160552542,160552591,160552590,160552591,50,-,GAGGCCGAGTCCTGACCATGATTGATTAGCTCCGCAAAGCCTGTTGAGCG,Distal Intergenic,2,160645888,160722764,76877,1,Top1-201,-93346,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,8,21969,ENSMUSG00000070544,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9464,cg02093647,-0.00000441,0.00000124,-3.542779888,0.000456835,loss,ns,0.0000016,0.00000211,0.756648497,0.44983513,pos,ns,0.00101065,0.000619393,1.631677381,0.10376287,pos,ns,0.983958025,-0.0000393,0.0000213,-1.846588522,0.065759804,neg,ns,0.053320935,Acvr2a,Acvr2a_fiveUTR,2,48814448,48814497,48814448,48814449,50,+,CGAGCGGAGCTGACAGTGATTTTGACAGTGATTTAAACCCGCTTTTGTTG,Promoter (<=1kb),2,48814109,48903269,89161,1,Acvr2a-201,339,Acvr2a-201;Gm13489-201,Acvr2a;Gm13489,0;-3893,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,7,10,11480,ENSMUSG00000052155,conserved gene but different region,2,48813661,48814558,898,*,898,142,0.74610245,1.137266444,0.158129176,3.41E-140,CpGisland,TRUE,U1,Pr-A
12797,cg03048506,-0.00000128,0.00000511,-0.25086275,0.802086417,loss,ns,0.00000657,0.00000869,0.756377177,0.449997502,pos,ns,-0.003268969,0.002544597,-1.284670773,0.199866473,neg,ns,0.699260051,0.0000765,0.0000875,0.874257663,0.382654731,pos,ns,0.937094416,Tmem33,Tmem33_Intergenic_upstream,5,67205778,67205827,67205778,67205779,50,-,CGGGGCTATAAAAATATTACAGTGTGGCTGAAAACCCCACGTACTTTGCA,Distal Intergenic,5,67260565,67291461,30897,1,Tmem33-201,-54787,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,22,22,67878,ENSMUSG00000037720,mapped to different genes,5,67205742,67206001,260,*,260,15,0.457692308,1.114922813,0.057692308,2.43E-08,CpGisland,TRUE,U11,Tr-P
12822,cg15647529,0.0000895,0.0000394,2.271097303,0.023826592,gain,ns,0.0000506,0.000067,0.756319176,0.450032217,pos,ns,0.024795771,0.019615489,1.264091428,0.207146865,pos,ns,0.683721635,-0.000124446,0.000674575,-0.184481192,0.853756605,neg,ns,0.318477942,Rsrc1,Rsrc1_Intron,3,67232975,67233024,67232975,67232976,50,-,CGGCTTCTGCTGTGTTGCCTTGAAATTTATTATTCTGGAGATTTAAAGAA,"Intron (Rsrc1-206/Rsrc1, intron 6 of 9)",3,66981390,67356559,375170,1,Rsrc1-206,251585,Rsrc1-206;Rsrc1-203;Rsrc1-202;Rsrc1-201;Rsrc1-209;Rsrc1-205,Rsrc1;Rsrc1;Rsrc1;Rsrc1;Rsrc1;Rsrc1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,37,66880,ENSMUSG00000034544,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15371,cg20896439,0.0000193,0.0000049,3.94609558,0.0000983,gain,ns,0.00000629,0.00000832,0.756105276,0.450160255,pos,ns,-0.000243731,0.002437605,-0.099988069,0.920418428,neg,ns,0.036014695,0.0000848,0.0000838,1.012073139,0.312292359,pos,ns,0.118740563,Galnt16,Galnt16_Exon,12,80519205,80519254,80519253,80519254,50,+,ACCGTAGCCTGGATCCTGGGCACTTTCTACTACTTATGGCAGGACAACCG,Promoter (<=1kb),12,80518277,80603892,85616,1,Galnt16-206,928,Galnt16-206;Galnt16-204;Galnt16-201,Galnt16;Galnt16;Galnt16,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,7,108760,ENSMUSG00000021130,conserved gene and region,12,80519253,80519526,274,*,274,35,0.700729927,1.041598784,0.127737226,5.24E-31,CpGisland,TRUE,U3,Pr-B
16194,cg21103567,0.00000712,0.00000992,0.718449788,0.473021134,gain,ns,0.0000127,0.0000168,0.756046735,0.4501953,pos,ns,-0.002297075,0.004935223,-0.465444964,0.64193965,neg,ns,0.192505799,-0.000220502,0.000169722,-1.299194116,0.194842735,neg,ns,0.793141574,Cacna1a,Cacna1a_Exon,8,84571845,84571894,84571893,84571894,50,-,TTCTCGACTTCATAGTGGTCAGTGGGGCCCTGGTAGCCTTTGCCTTCACG,"Exon (Cacna1a-213/Cacna1a, exon 26 of 49)",8,84338639,84640246,301608,1,Cacna1a-213,233206,Cacna1a-213;Cacna1a-201;Cacna1a-202;Cacna1a-211;Cacna1a-203,Cacna1a;Cacna1a;Cacna1a;Cacna1a;Cacna1a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,12,12286,ENSMUSG00000034656,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21891,cg07777343,0.000000212,0.000000707,0.299744696,0.764572783,gain,ns,-0.000000908,0.0000012,-0.756032969,0.450203541,neg,ns,0.000600629,0.00035181,1.70725191,0.08877651,pos,ns,1.051701934,-0.0000216,0.0000121,-1.782926584,0.07557667,neg,ns,0.016303791,Cdkn2c,Cdkn2c_fiveUTR,4,109665125,109665174,109665125,109665126,50,-,CGTTCCCCCAAGGCTCGGCCATTCTTTAGGGTCCTGACGATCAGGAAAAG,Promoter (<=1kb),4,109660876,109665372,4497,2,Cdkn2c-201,198,Cdkn2c-201;Cdkn2c-202,Cdkn2c;Cdkn2c,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,8,13,12580,ENSMUSG00000028551,conserved gene but different region,4,109665113,109665177,65,*,65,7,0.6,1.203703704,0.107692308,0.00000802,CpGisland,TRUE,NA,NRS
21462,cg04533279,-0.00000383,0.00000204,-1.876531888,0.061521544,loss,ns,0.00000262,0.00000347,0.755984812,0.450232372,pos,ns,-0.000441273,0.00101517,-0.434678585,0.664098167,neg,ns,0.177767718,0.0000473,0.0000349,1.353521672,0.176875099,pos,ns,0.940211097,Rbm6,Rbm6_fiveUTR,9,107833484,107833533,107833532,107833533,50,+,CGCAGACATAGCCATAGTCGTAACCTGGGGACAGCATTTAAATACAGACG,5' UTR,9,107773559,107872829,99271,2,Rbm6-201,39296,Rbm6-201;Rbm6-207;Rbm6-202;Rbm6-216;Rbm6-212;Rbm6-213;Rbm6-205,Rbm6;Rbm6;Rbm6;Rbm6;Rbm6;Rbm6;Rbm6,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,3,19654,ENSMUSG00000032582,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8727,cg13429861,0.000000693,0.00000124,0.558060012,0.577206205,gain,ns,-0.0000016,0.00000211,-0.755894441,0.450286478,neg,ns,0.001048165,0.000618197,1.695518897,0.090981078,pos,ns,1.04104892,-0.0000336,0.0000213,-1.578668835,0.115431859,neg,ns,0.964944462,Fbxw4,Fbxw4_Intron,19,45628926,45628975,45628974,45628975,50,+,TGTGTTTCAGGTCCTGCTATATCAGCCGTCAAATTGAAGAATTAATGACG,"Intron (Fbxw4-206/Fbxw4, intron 1 of 4)",19,45578254,45631138,52885,2,Fbxw4-206,2163,Fbxw4-206;Fbxw4-201;Fbxw4-208;Fbxw4-202,Fbxw4;Fbxw4;Fbxw4;Fbxw4,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,14,30838,ENSMUSG00000040913,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16276,cg20867091,0.0000023,0.00001,0.228628193,0.819308655,gain,ns,0.0000129,0.0000171,0.755882574,0.450293583,pos,ns,0.000793885,0.004996723,0.158881211,0.873865921,pos,ns,0.058555197,-0.00000461,0.000171837,-0.026829445,0.97861303,neg,ns,0.565175032,Mrm1,Mrm1_Intergenic_downstream,11,84708437,84708486,84708437,84708438,50,-,CGTTCAACACCTTTAATGATTTGTAACAGAAGAGGTGTGGCTACTCCTAT,Distal Intergenic,11,84814743,84815390,648,2,Mrm1-203,106953,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,37,42,217038,ENSMUSG00000018405,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23117,cg27230947,-0.00000563,0.0000162,-0.347766883,0.728251275,loss,ns,0.0000208,0.0000275,0.755865783,0.450303636,pos,ns,0.04516299,0.008053653,5.607764355,4.54E-08,pos,ns,7.343055178,-0.001169213,0.000276964,-4.221528505,0.0000319,neg,ns,0.495960068,Rnf220,Rnf220_Intron,4,117312012,117312061,117312012,117312013,50,-,CGTTTGCATAATTCCCAGAATACAGCTCCCTGAAGCTTTTGACCTGGGCC,"Intron (Rnf220-201/Rnf220, intron 2 of 14)",4,117271463,117497052,225590,2,Rnf220-201,184991,Rnf220-201;Rnf220-202;Rnf220-207,Rnf220;Rnf220;Rnf220,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U5,En-Sd
25251,cg19534879,0.0000373,0.00000345,10.81565896,2.41E-23,gain,yes,-0.00000443,0.00000586,-0.75572678,0.450386868,neg,ns,0.00316691,0.001717918,1.843458716,0.066216442,pos,ns,1.179034161,0.000128671,0.0000591,2.177953739,0.030162967,pos,ns,0.06771535,Cxxc4,Cxxc4_Exon,3,134240268,134240317,134240316,134240317,50,+,ACACTGCAGACCTTTGGCGGGGGAATGCATGAACAAGCTCAAATGCGGCG,"Exon (Cxxc4-203/Cxxc4, exon 3 of 4)",3,134236484,134259620,23137,1,Cxxc4-204,3784,Cxxc4-204;Cxxc4-203;Cxxc4-202;Cxxc4-201;Cxxc4-205,Cxxc4;Cxxc4;Cxxc4;Cxxc4;Cxxc4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,18,20,319478,ENSMUSG00000044365,mapped to different genes,3,134240265,134240649,385,*,385,21,0.587012987,0.63362069,0.054545455,5.57E-11,CpGisland,TRUE,U3,Pr-B
1547,cg02979539,0.0000474,0.00000936,5.058474948,0.000000725,gain,yes,0.000012,0.0000159,0.755573384,0.450478728,pos,ns,-0.000419123,0.004660062,-0.089939368,0.928393478,neg,ns,0.032267919,0.0000895,0.000160259,0.558208728,0.577104786,pos,ns,0.767887279,Gm11825,Gm11825_Promoter,4,13599828,13599877,13599876,13599877,50,-,ATGACTCTATGATTTCCTGTACAAATTACCCTTTGAAAGTGGCAGTGGCG,Promoter (6-7kb),4,13606034,13606769,736,1,Gm11825-201,-6206,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,4,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21533,cg11002012,0.0000024,0.00000294,0.816427236,0.414882748,gain,ns,-0.00000377,0.00000499,-0.755517167,0.450512395,neg,ns,-0.000130904,0.001463209,-0.089463721,0.928771156,neg,ns,0.032091281,-0.0000441,0.0000503,-0.87694921,0.381193301,neg,ns,0.86009714,Bsn,Bsn_Exon,9,108112269,108112318,108112317,108112318,50,-,ACTGGGCCAGGCTGGCCTCCTGGAAGCCAACTGCATCTCCCCGTGGGCCG,"Exon (Bsn-201/Bsn, exon 5 of 12)",9,108096022,108190384,94363,2,Bsn-201,78066,Bsn-201;Bsn-202,Bsn;Bsn,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,8,12217,ENSMUSG00000032589,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3771,cg13215331,0.0000148,0.0000019,7.781432878,1.08E-13,gain,yes,-0.00000244,0.00000323,-0.755516458,0.45051282,neg,ns,0.001362507,0.000947676,1.437734528,0.151518046,pos,ns,0.81953564,-0.00000507,0.0000326,-0.155669621,0.87639476,neg,ns,0.027964683,Tmem145,Tmem145_Exon,7,25314836,25314885,25314836,25314837,50,+,CGTGACGTTTATCAGCGACTCGGTGCCCAACTTCACGGAGCTCTTCTCCA,"Exon (Tmem145-202/Tmem145, exon 14 of 15)",7,25306108,25316182,10075,1,Tmem145-202,8728,Megf8-201;Tmem145-202;Tmem145-201;Tmem145-204,Megf8;Tmem145;Tmem145;Tmem145,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,330485,ENSMUSG00000043843,conserved gene and region,7,25314817,25315204,388,*,388,41,0.726804124,0.895468618,0.105670103,1.72E-32,CpGisland,TRUE,U13,Hc-P
16139,cg04283340,-0.0000162,0.00000521,-3.102764467,0.002093787,loss,ns,0.00000669,0.00000885,0.755500276,0.450522512,pos,ns,-0.003825103,0.002592733,-1.475316949,0.141142267,neg,ns,0.85034291,0.0000194,0.0000892,0.217765426,0.827755153,pos,ns,0.917487577,Bnc2,Bnc2_Intron,4,84503194,84503243,84503194,84503195,50,+,CGCCTGGTACTTTGGGCAGGAATCCTTGCGGTTTAGTCAATAAACAGAAT,"Intron (Bnc2-201/Bnc2, intron 4 of 7)",4,84275095,84675034,399940,2,Bnc2-201,171791,Bnc2-201;Bnc2-202;Bnc2-214;Bnc2-215;Bnc2-206;Bnc2-211;Bnc2-205;Bnc2-217;Bnc2-207;Bnc2-212;Bnc2-203;Bnc2-209;Bnc2-221;Bnc2-204;Bnc2-220;Bnc2-208,Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,91,242509,ENSMUSG00000028487,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17151,cg16565046,0.0000235,0.00000859,2.739482261,0.006509944,gain,ns,-0.000011,0.0000146,-0.755339941,0.450618543,neg,ns,0.010335698,0.004275263,2.417558145,0.016201632,pos,ns,1.79044123,-0.000111386,0.000147026,-0.757593888,0.449269622,neg,ns,0.85913413,Rps6-ps2,Rps6-ps2_Intergenic_downstream,8,88846438,88846487,88846438,88846439,50,-,CGCTGCTGAGATTATAAGGTTTGCTTTTATCTGTCAGAAATCAATATTTC,Distal Intergenic,8,88806391,88807137,747,1,Rps6-ps2-201,40096,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,14,675985,NA,mapped to different genes,8,88846293,88846439,147,*,147,10,0.462585034,1.299734748,0.068027211,0.00000233,CpGisland,TRUE,U15,NS
11381,cg12277787,-0.0000092,0.00000295,-3.115551425,0.002007758,loss,ns,-0.00000379,0.00000502,-0.755310841,0.450635974,neg,ns,-0.001941447,0.001469256,-1.321381281,0.187348673,neg,ns,0.727349378,-0.00000705,0.0000505,-0.139615457,0.889054489,neg,ns,0.932761777,Pakap,Pakap_threeUTR,4,57883131,57883180,57883179,57883180,50,+,CTGATGCAGACCCTCATGGAAGACTATGAGACACACAAATCTAAAAGGCG,3' UTR,4,57568179,57896982,328804,1,Pakap-211,314952,Pakap-211;Pakap-213;Pakap-207;Pakap-205;Pakap-206;Pakap-201;Pakap-202;Pakap-204,Pakap;Pakap;Pakap;Pakap;Pakap;Pakap;Pakap;Pakap,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,4,677884,ENSMUSG00000038729,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7185,cg10049968,-0.00000378,0.00000106,-3.558086913,0.000432016,loss,ns,0.00000136,0.0000018,0.755305486,0.450639182,pos,ns,0.000456066,0.000528707,0.862607037,0.389020381,pos,ns,0.410027645,-0.0000483,0.0000182,-2.658941347,0.008245742,neg,ns,0.02806676,Fam219a,Fam219a_fiveUTR,4,41569502,41569551,41569502,41569503,50,-,CGCCTCCTGTCAGCAGCTCAGCCACTGCGGTGACTCGGCAACTCCACTTC,Promoter (<=1kb),4,41517691,41569509,51819,2,Fam219a-201,0,Dnaic1-201;Fam219a-201;Fam219a-202;Fam219a-203;Fam219a-205,Dnaic1;Fam219a;Fam219a;Fam219a;Fam219a,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,7,71901,ENSMUSG00000028439,conserved gene and region,4,41568937,41569852,916,*,916,92,0.687772926,0.853465126,0.100436681,5.72E-70,CpGisland,TRUE,U2,Pr-W
26752,cg13277090,-0.00000251,0.00000271,-0.926156672,0.35508501,loss,ns,0.00000348,0.0000046,0.755284622,0.450651679,pos,ns,0.000457763,0.001348182,0.339540967,0.734432158,pos,ns,0.134048316,0.00000669,0.0000464,0.144185825,0.885447422,pos,ns,0.940436349,Smc1a,Smc1a_Exon,X,152046914,152046963,152046962,152046963,50,-,AAGGAGGTGACAGCCATTGAGACCAAGCTTGAACAGAAGCGCAGTGACCG,"Exon (Smc1a-201/Smc1a, exon 18 of 25)",20,152016428,152062694,46267,1,Smc1a-201,30486,Gm15267-201;Smc1a-201;Smc1a-203,Gm15267;Smc1a;Smc1a,-3402;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,24061,ENSMUSG00000041133,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5718,cg00862066,0.00000761,0.00000349,2.1768713,0.030244432,gain,ns,-0.00000448,0.00000594,-0.755275347,0.450657235,neg,ns,0.001729478,0.00173948,0.994250243,0.320876479,pos,ns,0.493662116,0.0000116,0.0000598,0.194272307,0.846089914,pos,ns,0.894913192,Add1,Add1_Exon,5,34616804,34616853,34616804,34616805,50,-,CGAAGACTAAGGTGTGGACGAACATTACACACGATCACGTGAAACCCTTG,"Exon (Add1-204/Add1, exon 10 of 16)",5,34573664,34632308,58645,1,Add1-204,43140,Add1-204;Add1-201;Add1-205;Add1-203;Add1-202;Add1-206;Add1-209;Add1-215;Add1-213;Add1-207;Add1-208,Add1;Add1;Add1;Add1;Add1;Add1;Add1;Add1;Add1;Add1;Add1,0;0;0;0;0;0;0;0;-2501;-2996;-3118,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,6,11518,ENSMUSG00000029106,conserved gene but different region,5,34616676,34616881,206,*,206,15,0.572815534,0.894097222,0.072815534,9.91E-10,CpGisland,TRUE,U10,Tr-S
10177,cg12911542,0.000130521,0.0000147,8.881024467,5.47E-17,gain,yes,-0.0000189,0.000025,-0.75526025,0.450666278,neg,ns,0.029010705,0.007314659,3.966104984,0.0000908,pos,ns,4.041985882,-0.000735298,0.000251551,-2.923062255,0.003721153,neg,ns,0.070077739,Hoxa6,Hoxa6_fiveUTR,6,52208684,52208733,52208732,52208733,50,+,TTAGTAGTCATCGAACTGGTTTGTTTCTGGATGGCCGAACGCCAAAAGCG,Promoter (<=1kb),6,52206288,52208722,2435,2,Hoxa6-201,0,Gm28308-201;Hoxa3-201;Hoxa3-203;Hoxa5-201;Hoxa6-201,Gm28308;Hoxa3;Hoxa3;Hoxa5;Hoxa6,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,4,15403,ENSMUSG00000043219,mapped to different genes,6,52208695,52208947,253,*,253,29,0.691699605,0.989347357,0.114624506,3.13E-24,CpGisland,TRUE,U3,Pr-B
15303,cg15101414,-0.0000481,0.000012,-3.998736566,0.0000797,loss,ns,-0.0000154,0.0000204,-0.755182927,0.450712597,neg,ns,-0.004984749,0.005985237,-0.832840764,0.405575712,neg,ns,0.39192806,-0.000135649,0.000205832,-0.659029527,0.510366027,neg,ns,0.520520931,Rhot1,Rhot1_Exon,11,80265774,80265823,80265774,80265775,50,+,CGTTTTGGCTTCGAGCAAGTTTTGGTGCTACTGTTTTTGCAGTTTTGGGC,"Exon (Rhot1-203/Rhot1, exon 21 of 21)",11,80209019,80266812,57794,1,Rhot1-203,56755,Rhot1-203;Rhot1-202;Rhot1-204;Rhot1-201;Rhot1-206;Rhot1-207;Rhot1-211;Rhot1-210,Rhot1;Rhot1;Rhot1;Rhot1;Rhot1;Rhot1;Rhot1;Rhot1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,6,59040,ENSMUSG00000017686,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7376,cg27484448,0.0000472,0.00000977,4.831414879,0.00000214,gain,ns,0.0000125,0.0000166,0.75508142,0.450773408,pos,ns,0.017352322,0.004863775,3.567665337,0.000417134,pos,ns,3.379724289,-0.000391731,0.000167265,-2.341980522,0.019814478,neg,ns,0.38384308,Pou3f3,Pou3f3_Intergenic_upstream,1,42472985,42473034,42472985,42472986,50,+,CGGGTCTAAGTTCAAGGCAGGCAGAGAATTATCTTGATTTATTAGTGCAC,Distal Intergenic,1,42694925,42703176,8252,1,Pou3f3-202,-221891,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,37,18993,ENSMUSG00000045515,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4409,cg10316601,-0.00000113,0.00000141,-0.79966629,0.424516486,loss,ns,-0.00000181,0.0000024,-0.754956242,0.450848405,neg,ns,-0.000715336,0.000702144,-1.018788115,0.309097994,neg,ns,0.509903813,0.0000569,0.0000241,2.356692932,0.019060281,pos,ns,0.965065935,Brpf3,Brpf3_threeUTR,17,28817612,28817661,28817660,28817661,50,-,TGCATGAAGTATAATGCTAAAGACACAATTTTCCACCGAGCAGCTGTCCG,3' UTR,17,28801090,28839949,38860,1,Brpf3-201,16522,Brpf3-201;Brpf3-216;Brpf3-217;Brpf3-219;Brpf3-210;Brpf3-218;Brpf3-212;Brpf3-202;Brpf3-209;Brpf3-208;Brpf3-211;Brpf3-207,Brpf3;Brpf3;Brpf3;Brpf3;Brpf3;Brpf3;Brpf3;Brpf3;Brpf3;Brpf3;Brpf3;Brpf3,0;0;0;0;0;0;0;7953;0;0;-675;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,threeUTR,7,7,268936,ENSMUSG00000063952,conserved gene and region,17,28817648,28817781,134,*,134,10,0.649253731,0.708245243,0.074626866,0.00000101,CpGisland,TRUE,U10,Tr-S
5827,cg09618893,0.000000393,0.00000403,0.097520232,0.922376288,gain,ns,-0.00000517,0.00000685,-0.754785495,0.450950716,neg,ns,-0.000436444,0.002006196,-0.217548001,0.827924422,neg,ns,0.082009307,0.0000248,0.000069,0.359556684,0.719423486,pos,ns,0.914315967,Ehmt2,Ehmt2_Exon,17,34905635,34905684,34905683,34905684,50,+,CCCCAGTGAGTACATGGAGGTCCCTCTGGGGTCCCTGGAGCTGCCCAGCG,"Exon (Ehmt2-204/Ehmt2, exon 10 of 28)",17,34898469,34914051,15583,1,Ehmt2-204,7166,Ehmt2-204;Ehmt2-202;Ehmt2-203;Ehmt2-201;Ehmt2-212;Ehmt2-209;Ehmt2-213;Ehmt2-211;Ehmt2-206;Ehmt2-207;Ehmt2-208;Ehmt2-214;Ehmt2-210,Ehmt2;Ehmt2;Ehmt2;Ehmt2;Ehmt2;Ehmt2;Ehmt2;Ehmt2;Ehmt2;Ehmt2;Ehmt2;Ehmt2;Ehmt2,0;0;0;0;5941;0;0;-226;-318;-1060;-1714;-1716;-2961,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,110147,ENSMUSG00000013787,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6414,cg22343459,0.00000465,0.00000202,2.308461283,0.021631239,gain,ns,-0.00000259,0.00000343,-0.754716281,0.450992193,neg,ns,0.001008741,0.001003521,1.005202239,0.315583443,pos,ns,0.50088579,-0.0000829,0.0000345,-2.403541733,0.016824079,neg,ns,0.088199839,Pknox2,Pknox2_fiveUTR,9,37147224,37147273,37147272,37147273,50,+,AATGAATGACAGCTTACCTGATGCCAATCTTCATCAGACTGACACCGGCG,Promoter (<=1kb),9,36987178,37147266,160089,2,Pknox2-211,0,Pknox2-201;Pknox2-202;Pknox2-209;Pknox2-212;Pknox2-211;Pknox2-213;Pknox2-214,Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2,0;0;0;0;0;0;-1409,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,47,208076,ENSMUSG00000035934,conserved gene and region,9,37147269,37147367,99,*,99,11,0.737373737,0.926020408,0.111111111,3.31E-09,CpGisland,TRUE,U3,Pr-B
828,cg25998250,-0.0000029,0.00000154,-1.882079395,0.060761837,loss,ns,-0.00000197,0.00000261,-0.7546492,0.451032393,neg,ns,-0.000161277,0.000765779,-0.210604946,0.833333916,neg,ns,0.079180942,-0.0000013,0.0000263,-0.049366027,0.960659392,neg,ns,0.970131048,1810013L24Rik,1810013L24Rik_Exon,16,8855869,8855918,8855869,8855870,50,+,CGAATGCTAGTCGAAGGAGAAATGGACTCCATGATGTCGATTTGAACACT,"Exon (1810013L24Rik-201/1810013L24Rik, exon 4 of 4)",16,8830100,8858922,28823,1,1810013L24Rik-201,25769,1810013L24Rik-201,1810013L24Rik,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,18,19,69053,ENSMUSG00000022507,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26688,cg11161704,0.00000264,0.00000731,0.361486795,0.717981826,gain,ns,0.00000938,0.0000124,0.754570355,0.451079646,pos,ns,0.000828307,0.00364065,0.227516215,0.82017234,pos,ns,0.086094881,-0.0000985,0.000125202,-0.786766215,0.432019778,neg,ns,0.726622587,Camta1,Camta1_Exon,4,151083842,151083891,151083842,151083843,50,+,CGGATTTCCAGTCACCTGTACTGTAGACACACCAATGTAAAGATCTTTGG,"Exon (Camta1-211/Camta1, exon 16 of 25)",4,150917322,151861669,944348,2,Camta1-211,777778,Camta1-211;Camta1-202;Camta1-207;Camta1-201;Camta1-204;Camta1-203;Camta1-208;Camta1-205,Camta1;Camta1;Camta1;Camta1;Camta1;Camta1;Camta1;Camta1,0;0;0;0;0;0;0;24412,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,22,100072,ENSMUSG00000014592,conserved gene and region,4,151083778,151083843,66,*,66,7,0.636363636,1.087058824,0.106060606,0.00000889,CpGisland,TRUE,NA,NRS
22898,cg11234171,-0.000000223,0.000000498,-0.447751985,0.654644929,loss,ns,-0.000000638,0.000000846,-0.75447663,0.45113582,neg,ns,0.000314324,0.000247778,1.268571737,0.205545616,pos,ns,0.687091781,-0.0000171,0.00000852,-2.010464291,0.045247847,neg,ns,0.011128314,Lrrc41,Lrrc41_Exon,4,116075422,116075471,116075470,116075471,50,-,AGGCCTGGCGCGCCCGGAGTTGCTGGTTCTGTGAGGTAGCGGCGGCAACG,Promoter (<=1kb),4,116075463,116083056,7594,1,Lrrc41-206,0,Lrrc41-201;Lrrc41-206;Lrrc41-202;Lrrc41-204;Lrrc41-205;Uqcrh-201;Uqcrh-204;Uqcrh-202;Uqcrh-203,Lrrc41;Lrrc41;Lrrc41;Lrrc41;Lrrc41;Uqcrh;Uqcrh;Uqcrh;Uqcrh,0;0;0;-1414;-3945;-391;-388;-351;-363,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,9,230654,ENSMUSG00000028703,conserved gene but different region,4,116075337,116076722,1386,*,1386,139,0.714285714,0.81376508,0.1002886,3.09E-105,CpGisland,TRUE,U1,Pr-A
434,cg21906713,-0.00000422,0.00000382,-1.105614144,0.269750866,loss,ns,-0.00000489,0.00000648,-0.754441408,0.451156931,neg,ns,0.000530139,0.001899737,0.279059079,0.780385561,pos,ns,0.107690775,0.00000798,0.0000653,0.122207343,0.902813994,pos,ns,0.943932516,Zeb1,Zeb1_threeUTR,18,5773211,5773260,5773211,5773212,50,-,CGGGTGTGCCTGAACCTCAGACCTAGTAATTTTTCATGCAGTTTTCAAAG,3' UTR,18,5591864,5775467,183604,1,Zeb1-201,181347,Zeb1-201;Zeb1-210,Zeb1;Zeb1,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,7,21417,ENSMUSG00000024238,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9506,cg25662907,0.0000168,0.00000898,1.874471929,0.061805652,gain,ns,0.0000115,0.0000153,0.754436759,0.451159718,pos,ns,0.005073071,0.004471189,1.134613415,0.257413888,pos,ns,0.589368026,-0.000192862,0.000153764,-1.254274228,0.210687264,neg,ns,0.265845136,Exoc5,Exoc5_Intergenic_downstream,14,48990833,48990882,48990881,48990882,50,+,ATTTTTAAAACCTAAAAGCAAGCGCCTCCTTTTAACTTCTGCCTACTGCG,Distal Intergenic,14,49015471,49019792,4322,2,Exoc5-205,28910,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,4,105504,ENSMUSG00000061244,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14649,cg24898582,-0.0000429,0.00000776,-5.527771885,6.89E-08,loss,yes,0.00000995,0.0000132,0.754301302,0.451240913,pos,ns,-0.0000338,0.003864178,-0.00873788,0.993033889,neg,ns,0.00303593,0.000146289,0.000132889,1.100837976,0.27182122,pos,ns,0.902384921,Rbfox2,Rbfox2_Intron,15,77089438,77089487,77089486,77089487,50,-,TACACAGCCTCAATTACTAGAGCGTGCAGCCACAACGACCTGGTATTACG,"Intron (1700109K24Rik-202/1700109K24Rik-202, intron 1 of 1)",15,77078990,77306928,227939,2,Rbfox2-204,217441,Rbfox2-204;Rbfox2-203;Rbfox2-202;Rbfox2-206;Rbfox2-208;Rbfox2-209;Rbfox2-201;Rbfox2-211;Rbfox2-215;Rbfox2-207,Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,20,93686,ENSMUSG00000033565,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6143,cg26130330,-0.0000325,0.0000119,-2.742102951,0.006459471,loss,ns,0.0000152,0.0000202,0.754098273,0.451362629,pos,ns,0.001726686,0.005906516,0.292335809,0.770225437,pos,ns,0.113382143,-0.0000632,0.000203125,-0.311305014,0.755777995,neg,ns,0.783491929,Tenm2,Tenm2_Exon,11,36139729,36139778,36139729,36139730,50,-,CGCCGTGAGTGCCACAGTCTACTGAGCACACTTCTGGAAGAAAAACAATG,"Exon (Tenm2-202/Tenm2, exon 14 of 31)",11,36006656,37235882,1229227,2,Tenm2-202,1096104,Tenm2-202;Tenm2-208;Tenm2-201;Tenm2-204;Tenm2-205,Tenm2;Tenm2;Tenm2;Tenm2;Tenm2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,21,84,23964,ENSMUSG00000049336,conserved gene and region,11,36139608,36139733,126,*,126,10,0.642857143,0.782608696,0.079365079,0.000000572,CpGisland,TRUE,U15,NS
5408,cg00566346,-0.0000183,0.00000634,-2.887664755,0.004154097,loss,ns,0.00000812,0.0000108,0.753957561,0.451446996,pos,ns,-0.002901026,0.003155926,-0.919231259,0.358689318,neg,ns,0.445281556,-0.000117381,0.000108532,-1.08153403,0.280300241,neg,ns,0.829028774,Mvb12b,Mvb12b_Exon,2,33813071,33813120,33813119,33813120,50,-,TTAGAGCAAACTAATTGAAGTTGTGTTTTGACACACTTTCCAAATTCACG,"Exon (Nron-203/Nron-203, exon 3 of 3)",2,33729953,33887946,157994,2,Mvb12b-201,74826,Mvb12b-201;Mvb12b-204,Mvb12b;Mvb12b,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,47,72543,ENSMUSG00000038740,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20202,cg17875783,0.0000377,0.0000042,8.980755052,2.67E-17,gain,yes,-0.00000538,0.00000714,-0.753875332,0.451496303,neg,ns,0.006890394,0.002092059,3.29359408,0.001103602,pos,ns,2.957187612,-0.000146156,0.0000719,-2.031475926,0.043059458,neg,ns,0.071326432,Unc79,Unc79_fiveUTR,12,102949345,102949394,102949345,102949346,50,-,CGGGGGCGATTTCCTAACCTTCCGGGACCGAATTCTGCAATTTGATGTGC,Promoter (<=1kb),12,102948859,103184001,235143,1,Unc79-202,486,Unc79-202;Unc79-208,Unc79;Unc79,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,12,24,217843,ENSMUSG00000021198,conserved gene and region,12,102948810,102949512,703,*,703,59,0.644381223,0.809149434,0.083926031,2.91E-40,CpGisland,TRUE,NA,NRS
3993,cg00220188,-0.00000355,0.00000332,-1.070902011,0.285046539,loss,ns,0.00000425,0.00000563,0.75370613,0.451597771,pos,ns,-0.002683509,0.001650741,-1.625639495,0.105042507,neg,ns,0.978634922,0.0000582,0.0000568,1.025641184,0.305860391,pos,ns,0.930764029,Gm7847,Gm7847_Intergenic_upstream,18,26263067,26263116,26263115,26263116,50,+,TAATAAAATGCATTCACTGCAAGCCTCTAGGCGTATGTACAGAAATAACG,Distal Intergenic,18,25823581,25824357,777,2,Gm7847-201,-438710,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,22,665916,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16238,cg02565008,0.000123984,0.0000125,9.909219275,2.74E-20,gain,yes,-0.000016,0.0000213,-0.753564571,0.451682671,neg,ns,0.019532591,0.006227326,3.136593748,0.001873253,pos,ns,2.72740353,-0.000550558,0.000214157,-2.570812388,0.010612425,neg,ns,0.18679052,Bnc2,Bnc2_Intron,4,84637755,84637804,84637755,84637756,50,-,CGCTGAAATGATCTTGTGGAATGTGTCTAGTGGCACTGGAATAACCTGAA,"Intron (Bnc2-201/Bnc2, intron 1 of 7)",4,84275095,84675034,399940,2,Bnc2-201,37230,Bnc2-201;Bnc2-202;Bnc2-214;Bnc2-215;Bnc2-206;Bnc2-211;Bnc2-217;Bnc2-207;Bnc2-203;Bnc2-209;Bnc2-204;Bnc2-210,Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,91,242509,ENSMUSG00000028487,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
21239,cg26148010,0.000012,0.0000147,0.816550178,0.414812568,gain,ns,-0.0000188,0.0000249,-0.753563029,0.451683596,neg,ns,-0.001371405,0.007294922,-0.187994489,0.851003968,neg,ns,0.070068415,-0.000216553,0.000250872,-0.863200652,0.388694485,neg,ns,0.84046464,Gm9599,Gm9599_Intergenic_upstream,12,106929314,106929363,106929362,106929363,50,+,TCGCTTCGCTCTCGTAGGTTTGCAAACAAATTCCACAGCACATTCAACCG,Distal Intergenic,12,106886446,106886926,481,2,Gm9599-201,-42388,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,4,673604,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2333,cg14907393,0.00000403,0.00000206,1.953344385,0.051678126,gain,ns,-0.00000264,0.0000035,-0.752967547,0.452040838,neg,ns,0.001825529,0.001026093,1.779107818,0.076201853,pos,ns,1.118034466,-0.0000743,0.0000353,-2.106592276,0.03595633,neg,ns,0.0437888,Meis1,Meis1_Promoter,11,19018996,19019045,19019044,19019045,50,-,ACAGGTCGCGTCTTACACAATGCATTGGGCTGCAGCAAGTAGGCTCCTCG,Promoter (<=1kb),11,18879817,19018985,139169,2,Meis1-206,-60,Meis1-206;Meis1-202;Meis1-209;Meis1-201;Meis1-208;Meis1-207;Meis1-204;Meis1-205,Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1,0;0;0;0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,8,88,17268,ENSMUSG00000020160,conserved gene but different region,11,19018885,19019116,232,*,232,18,0.590517241,0.911392405,0.077586207,4.67E-12,CpGisland,TRUE,U1,Pr-A
21556,cg14964605,-0.00000453,0.00000204,-2.222373672,0.026979422,loss,ns,0.00000261,0.00000346,0.752905801,0.452077891,pos,ns,-0.000839568,0.00101435,-0.827690253,0.408482648,neg,ns,0.388826388,0.0000261,0.0000349,0.74931927,0.454233017,pos,ns,0.95354892,Zfhx3,Zfhx3_Intron,8,108281785,108281834,108281785,108281786,50,-,CGCTGTCCGGTAACCATGGCAATAGGGTCAGCAGATATGATACTTAATTT,"Intron (Zfhx3-204/Zfhx3, intron 2 of 15)",8,107942644,108961630,1018987,1,Zfhx3-204,339141,Zfhx3-204;Zfhx3-207,Zfhx3;Zfhx3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,114,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10607,cg17830557,0.0000192,0.0000109,1.75100862,0.080933497,gain,ns,0.000014,0.0000186,0.752757502,0.452166887,pos,ns,-0.007324391,0.005443397,-1.345555267,0.179429317,neg,ns,0.746106595,0.000209331,0.000187198,1.118233912,0.264332903,pos,ns,0.833932988,Gm12477,Gm12477_Intron,4,54652693,54652742,54652741,54652742,50,-,TTTTTTCTTTCAGACGCTCTGAAAAGGTCAGCCTGTTCGTTTCTTAGACG,"Intron (Gm12478-201/Gm12478-201, intron 1 of 1)",4,54669622,54670192,571,2,Gm12477-201,17499,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,6,100416401,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11588,cg21711680,-0.000014,0.00000253,-5.529054848,6.84E-08,loss,yes,0.00000323,0.00000429,0.75272963,0.452183615,pos,ns,-0.001465886,0.001258256,-1.165014048,0.244908992,neg,ns,0.610995269,0.0000272,0.0000433,0.62857885,0.530087663,pos,ns,0.94942353,Pkp4,Pkp4_fiveUTR,2,59308043,59308092,59308091,59308092,50,+,TTCAGTTCCATCTAGAGCACAGTCTCCTTCTTATGTTATCAGCACAGGCG,5' UTR,2,59160850,59355204,194355,1,Pkp4-210,147193,Pkp4-210;Pkp4-202;Pkp4-211;Pkp4-205;Pkp4-201;Pkp4-212;Pkp4-213;Pkp4-214;Pkp4-203;Pkp4-207,Pkp4;Pkp4;Pkp4;Pkp4;Pkp4;Pkp4;Pkp4;Pkp4;Pkp4;Pkp4,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,TRUE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,7,227937,ENSMUSG00000026991,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22586,cg24958725,0.00001,0.0000149,0.669521862,0.503660989,gain,ns,-0.0000191,0.0000254,-0.752611997,0.452254217,neg,ns,0.003994362,0.007437801,0.537035345,0.591628432,pos,ns,0.227950963,-0.000527829,0.000255785,-2.063563249,0.039891267,neg,ns,0.724248603,Rpl19-ps10,Rpl19-ps10_Intergenic_downstream,7,115300483,115300532,115300531,115300532,50,+,ACTTCTCAAGATGTTTTCATCGATTTTGCCAACACTCAGCTGCTTTATCG,Distal Intergenic,7,115172056,115172385,330,1,Rpl19-ps10-201,128427,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,29,668472,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11123,cg00046146,-0.0000847,0.0000153,-5.54546456,6.28E-08,loss,yes,-0.0000195,0.0000259,-0.752547689,0.452292817,neg,ns,-0.000486403,0.007601483,-0.063987961,0.949021053,neg,ns,0.022724153,-0.000751686,0.000261414,-2.87545954,0.004313714,neg,ns,0.613365285,Gm13527,Gm13527_Intergenic_upstream,2,56662843,56662892,56662891,56662892,50,-,GCCCTAGAAAATCTGCTGGTGTAGATCGGTGTGAAAAGTACTGCCAAACG,Distal Intergenic,2,57079748,57080438,691,1,Gm13527-201,-416905,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,13,13,227920,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18383,cg11194988,0.00000866,0.00000737,1.173996709,0.241297463,gain,ns,-0.00000943,0.0000125,-0.752518445,0.45231037,neg,ns,-0.005875076,0.003669637,-1.600996251,0.110396275,neg,ns,0.957045582,-0.0000561,0.000126199,-0.444494167,0.656995499,neg,ns,0.716381442,Pde8b,Pde8b_Exon,13,95041980,95042029,95042028,95042029,50,+,GCCCGAAGAGTGGTTTCAGAACAGTTTAAAAATTCACATACTCCAAACCG,"Exon (Pde8b-210/Pde8b, exon 15 of 20)",13,95024454,95250336,225883,2,Pde8b-210,208307,Pde8b-210;Pde8b-208;Pde8b-213;Pde8b-207;Pde8b-201;Pde8b-202;Pde8b-214;Pde8b-204;Pde8b-206;Pde8b-205,Pde8b;Pde8b;Pde8b;Pde8b;Pde8b;Pde8b;Pde8b;Pde8b;Pde8b;Pde8b,0;0;0;0;0;0;0;0;0;10989,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,218461,ENSMUSG00000021684,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11090,cg09045100,0.0000448,0.00000639,7.009343149,1.50E-11,gain,yes,-0.00000817,0.0000109,-0.75224603,0.452473907,neg,ns,-0.00039752,0.00318037,-0.124991911,0.900610968,neg,ns,0.045462768,0.000307687,0.000109373,2.81320236,0.00521825,pos,ns,0.138516319,Nkx2-1,Nkx2-1_fiveUTR,12,56536684,56536733,56536732,56536733,50,-,TGGCCACGCTGGATATTAGTAGATGAGGATCATTCTGCTTCAATTGGGCG,Promoter (<=1kb),12,56531958,56536908,4951,2,Nkx2-1-201,175,Nkx2-1-202;Nkx2-1-201,Nkx2-1;Nkx2-1,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,6,29,21869,ENSMUSG00000001496,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
1677,cg19342019,-0.00000345,0.00000249,-1.384996793,0.167049324,loss,ns,0.00000318,0.00000423,0.752156327,0.452527765,pos,ns,0.002179038,0.001240049,1.75721971,0.079867479,pos,ns,1.097630026,-0.0000947,0.0000426,-2.219892098,0.027149263,neg,ns,0.954326762,Gm26993,Gm26993_Intergenic_upstream,19,14301326,14301375,14301374,14301375,50,-,TCATGCTGGTGTGATGACAGCTCTTAAAATATTGAGTGATTGTGGGCCCG,Distal Intergenic,19,14017583,14018371,789,2,Gm26993-201,-283004,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,8,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7546,cg03274991,-0.00000276,0.00000124,-2.225016836,0.026799536,loss,ns,-0.00000159,0.00000211,-0.752149958,0.452531589,neg,ns,0.000680598,0.000618199,1.100937088,0.271778146,pos,ns,0.565785468,-0.0000423,0.0000213,-1.988639657,0.047619935,neg,ns,0.047901869,Arhgef12,Arhgef12_fiveUTR,9,43105313,43105362,43105361,43105362,50,-,GGGACACAAAAGTCCAACTCAAAACTCCATTCAGTCATCTAGACCATCCG,Promoter (<=1kb),9,42963842,43105987,142146,2,Arhgef12-202,625,Arhgef12-202;Arhgef12-201;Arhgef12-205;Tlcd5-201;Tlcd5-203;Tlcd5-202,Arhgef12;Arhgef12;Arhgef12;Tlcd5;Tlcd5;Tlcd5,0;0;0;11208;11171;11182,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,5,69632,ENSMUSG00000059495,conserved gene and region,9,43105361,43106549,1189,*,1189,136,0.684608915,0.976237624,0.114381834,1.39E-111,CpGisland,TRUE,U1,Pr-A
10748,cg19463228,0.0000288,0.00000908,3.177468436,0.001635448,gain,ns,-0.0000116,0.0000154,-0.75211647,0.452551696,neg,ns,-0.015119297,0.004516753,-3.347382126,0.000916281,neg,ns,3.037971437,0.000328867,0.000155331,2.117203748,0.035038694,pos,ns,0.754355833,Thtpa,Thtpa_threeUTR,14,55097745,55097794,55097745,55097746,50,-,CGTGTTTATAGGATTTCCACTTAGCCGTGATCAGTAGTTAAGCACAGGAA,3' UTR,14,55094784,55098986,4203,1,Thtpa-201,2961,Ap1g2-209;Ap1g2-207;Ap1g2-203;Ap1g2-202;Ap1g2-201;Ap1g2-211;Ap1g2-204;Ap1g2-206;Ap1g2-210;Thtpa-201,Ap1g2;Ap1g2;Ap1g2;Ap1g2;Ap1g2;Ap1g2;Ap1g2;Ap1g2;Ap1g2;Thtpa,0;1594;0;0;0;0;0;6716;7097;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,4,105663,ENSMUSG00000045691,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
891,cg18366518,-0.0000081,0.00000845,-0.95850109,0.33855708,loss,ns,0.0000108,0.0000144,0.752077494,0.452575099,pos,ns,0.003829417,0.00420557,0.910558415,0.363235546,pos,ns,0.439811658,-0.0000676,0.000144629,-0.4675134,0.640461072,neg,ns,0.845874144,Gm13220,Gm13220_Intron,2,9435461,9435510,9435461,9435462,50,-,CGGCAGGATTTGCAACAGAGAAATCACATCAGCCTATGCTGATTAGCAAT,"Intron (Gm13219-201/Gm13219-201, intron 3 of 3)",2,9575836,9576343,508,1,Gm13220-201,-140375,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,8,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13127,cg11872330,-0.0000243,0.00000504,-4.818194981,0.00000227,loss,ns,0.00000644,0.00000857,0.751947209,0.452653334,pos,ns,0.003532663,0.002509292,1.407832797,0.160182563,pos,ns,0.795384763,-0.000255065,0.0000863,-2.955757934,0.003358291,neg,ns,0.913622047,Ikzf2,Ikzf2_Exon,1,69539268,69539317,69539316,69539317,50,+,GATGATAGACCTGAGAATAAGCTGAGCTTATAACTGGGGCCACTTCAGCG,"Exon (Ikzf2-201/Ikzf2, exon 8 of 8)",1,69531214,69685821,154608,2,Ikzf2-201,146504,Ikzf2-201;Ikzf2-207;Ikzf2-202;Ikzf2-204;Ikzf2-208;Ikzf2-209,Ikzf2;Ikzf2;Ikzf2;Ikzf2;Ikzf2;Ikzf2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,14,22779,ENSMUSG00000025997,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13397,cg04330371,0.000117921,0.000014,8.433988923,1.29E-15,gain,yes,-0.0000179,0.0000238,-0.751917329,0.452671278,neg,ns,0.015029834,0.006958813,2.159827238,0.031552435,pos,ns,1.500967122,-0.000366452,0.000239313,-1.531265517,0.126723595,neg,ns,0.037802424,Nr2f2,Nr2f2_Exon,7,70359959,70360008,70360007,70360008,50,-,TCGATGGGACAGTTCCGGTTGGCGCGGCACGTGTAGCTCAGGTTCCTCCG,Promoter (<=1kb),7,70351944,70360593,8650,2,Nr2f2-201,585,Nr2f2-201;Nr2f2-203;Nr2f2-202;Nr2f2-205;Nr2f2-204;Nr2f2-206,Nr2f2;Nr2f2;Nr2f2;Nr2f2;Nr2f2;Nr2f2,0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,24,69,11819,ENSMUSG00000030551,conserved gene and region,7,70359750,70360467,718,*,718,76,0.703342618,0.857367313,0.105849582,8.30E-60,CpGisland,TRUE,U1,Pr-A
11252,cg18508649,0.00000668,0.00000381,1.756567481,0.07997888,gain,ns,0.00000486,0.00000647,0.751761633,0.452764783,pos,ns,0.00327969,0.001894078,1.731549313,0.084348685,pos,ns,1.073921685,-0.0000479,0.0000651,-0.735256909,0.462738927,neg,ns,0.018680112,Gm13526,Gm13526_Intron,2,57182101,57182150,57182101,57182102,50,+,CGCGCGCTTCGCATGTGTGAGGTCCCGGGTTCAATCCCCGGCATCTCCAA,"Intron (4930555B11Rik-201/4930555B11Rik-201, intron 1 of 3)",2,57214054,57214242,189,2,Gm13526-201,32092,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,3,100041900,NA,mapped to different genes,2,57182072,57182157,86,*,86,8,0.651162791,0.887741936,0.093023256,0.0000038,CpGisland,TRUE,U1,Pr-A
18856,cg14045036,-0.00000053,0.000000464,-1.141502622,0.254541812,loss,ns,-0.000000593,0.000000788,-0.751750112,0.452771703,neg,ns,0.000083,0.00023095,0.359488759,0.719474239,pos,ns,0.142984751,-0.00000429,0.00000794,-0.540262948,0.589403625,neg,ns,0.009037354,Pip4k2b,Pip4k2b_Exon,11,97744482,97744531,97744482,97744483,50,+,CGGCTCGCTGGCCCGGAATAGCTTCACTTTCTGGCACACGAAATGCTTCT,Promoter (<=1kb),11,97715157,97744704,29548,2,Pip4k2b-201,173,Cwc25-203;Cwc25-201;Cwc25-204;Pip4k2b-201,Cwc25;Cwc25;Cwc25;Pip4k2b,6639;22025;8179;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,108083,ENSMUSG00000018547,conserved gene and region,11,97744124,97745191,1068,*,1068,111,0.699438202,0.850135536,0.103932584,4.53E-86,CpGisland,TRUE,U1,Pr-A
10176,cg11516694,0.0000871,0.0000118,7.371659106,1.54E-12,gain,yes,-0.0000151,0.0000201,-0.751738792,0.452778502,neg,ns,0.019170015,0.005882106,3.259039365,0.001242098,pos,ns,2.905844073,-0.000502514,0.000202285,-2.484185735,0.01351264,neg,ns,0.091613346,Hoxa6,Hoxa6_fiveUTR,6,52208675,52208724,52208723,52208724,50,+,CTATAACTATTAGTAGTCATCGAACTGGTTTGTTTCTGGATGGCCGAACG,Promoter (<=1kb),6,52206288,52208722,2435,2,Hoxa6-201,0,Gm28308-201;Hoxa3-201;Hoxa3-203;Hoxa5-201;Hoxa6-201,Gm28308;Hoxa3;Hoxa3;Hoxa5;Hoxa6,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,4,15403,ENSMUSG00000043219,mapped to different genes,6,52208695,52208947,253,*,253,29,0.691699605,0.989347357,0.114624506,3.13E-24,CpGisland,TRUE,U3,Pr-B
14144,cg02268145,0.0000265,0.00000501,5.291850367,0.00000023,gain,yes,-0.0000064,0.00000851,-0.751704919,0.452798847,neg,ns,0.005992741,0.00249274,2.404077991,0.016799882,pos,ns,1.77469377,-0.000198684,0.0000857,-2.317688993,0.021117101,neg,ns,0.017751575,Hoxd9,Hoxd9_fiveUTR,2,74697894,74697943,74697942,74697943,50,-,AGCGGACTGATTTACTCCCGGTATTGGTAAATATGATCACGTGGGCCGCG,Promoter (<=1kb),2,74697727,74700208,2482,1,Hoxd9-201,167,Hoxd10-201;Hoxd9-201,Hoxd10;Hoxd9,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,8,15438,ENSMUSG00000043342,mapped to different genes,2,74697896,74698814,919,*,919,110,0.717083787,0.931104357,0.119695321,7.60E-93,CpGisland,TRUE,U3,Pr-B
2450,cg06512391,-0.0000442,0.0000073,-6.049920669,4.17E-09,loss,yes,0.00000932,0.0000124,0.751584109,0.452871412,pos,ns,-0.004957775,0.003633375,-1.364509561,0.173396922,neg,ns,0.760958617,0.0000493,0.000124951,0.394155651,0.693737125,pos,ns,0.909945146,Gm12026,Gm12026_Intergenic_downstream,11,19529356,19529405,19529356,19529357,50,-,CGGCTTTATGTAGTGCTAAGTGTACAATAGTAATCAGAACTTGAGTAGAA,Distal Intergenic,11,19383685,19384708,1024,1,Gm12026-201,145720,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,4,635455,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21792,cg20261774,0.00000658,0.00000648,1.015748234,0.310541391,gain,ns,0.00000827,0.000011,0.751464368,0.452943341,pos,ns,0.005285625,0.003223822,1.639552314,0.102112639,pos,ns,0.990920501,-0.00019769,0.000110867,-1.783124491,0.075544385,neg,ns,0.7442801,Lmo1,Lmo1_Intron,7,109166051,109166100,109166099,109166100,50,-,AGTAGTTAATGCAGTATTGACTGCATTACACGCTCCCGTGCCTCCCCTCG,"Intron (Lmo1-201/Lmo1, intron 1 of 3)",7,109138572,109170519,31948,2,Lmo1-201,4419,Lmo1-201;Lmo1-202;Lmo1-203,Lmo1;Lmo1;Lmo1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,66,109594,ENSMUSG00000036111,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21521,cg25699563,0.0000758,0.00000712,10.6560625,8.48E-23,gain,yes,-0.00000908,0.0000121,-0.751262373,0.453064696,neg,ns,0.010054144,0.003542363,2.838258774,0.004835294,pos,ns,2.315577149,-0.000276595,0.000121822,-2.270494032,0.023863575,neg,ns,0.311042896,Zfhx3,Zfhx3_Intron,8,108098814,108098863,108098862,108098863,50,-,TGGCAAAAATCGATAATGCTTTCTGTAAATTGCTCCTCCCAAAGGAGCCG,"Intron (Zfhx3-204/Zfhx3, intron 1 of 15)",8,107942644,108961630,1018987,1,Zfhx3-204,156170,Zfhx3-204;Zfhx3-207,Zfhx3;Zfhx3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,114,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9892,cg20306751,-0.0000012,0.000000554,-2.168880846,0.030851692,loss,ns,-0.000000707,0.000000941,-0.751138424,0.453139171,neg,ns,-0.000276938,0.000275729,-1.004384616,0.315976594,neg,ns,0.500345087,-0.0000158,0.00000948,-1.665513448,0.096820553,neg,ns,0.010518363,Naa15,Naa15_fiveUTR,3,51415995,51416044,51416043,51416044,50,-,TCCGCCATTTTGGCTGCCTCTGTCGGTCTGTTCAGTTACCACGTGAACCG,Promoter (<=1kb),3,51416016,51475985,59970,1,Naa15-201,0,Naa15-205;Naa15-201;Naa15-204;Naa15-203,Naa15;Naa15;Naa15;Naa15,0;0;0;-570,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,5,74838,ENSMUSG00000063273,mapped to different genes,3,51415732,51416081,350,*,350,38,0.691428571,0.926700112,0.108571429,1.23E-30,CpGisland,TRUE,U1,Pr-A
13388,cg01501208,0.0000355,0.00000442,8.040204478,1.91E-14,gain,yes,-0.00000564,0.0000075,-0.751079109,0.453174813,neg,ns,0.007073154,0.002198169,3.21774843,0.001428695,pos,ns,2.84506057,-0.000219823,0.0000756,-2.907907613,0.003901197,neg,ns,0.049823576,Nr2f2,Nr2f2_Exon,7,70359340,70359389,70359340,70359341,50,-,CGGCAGCGTTAATACGGCGAAGTGCATAAAATTGCCATTTGTAATTTGAA,"Exon (Nr2f2-206/Nr2f2, exon 1 of 1)",7,70351944,70360593,8650,2,Nr2f2-201,1204,Nr2f2-201;Nr2f2-203;Nr2f2-202;Nr2f2-205;Nr2f2-204;Nr2f2-206,Nr2f2;Nr2f2;Nr2f2;Nr2f2;Nr2f2;Nr2f2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,24,69,11819,ENSMUSG00000030551,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3673,cg00471664,-0.000026,0.00000833,-3.128419811,0.001924482,loss,ns,0.0000106,0.0000141,0.750939364,0.453258792,pos,ns,-0.004182219,0.004144025,-1.00921667,0.313657805,neg,ns,0.503543901,0.0000482,0.000142513,0.338199399,0.735441854,pos,ns,0.139445967,Rabac1,Rabac1_Exon,7,24972112,24972161,24972160,24972161,50,-,GGATGAGGCCCAGGAACACGAACACATAGTTGCTCTGGTAGTACTCCACG,Promoter (<=1kb),7,24969752,24972754,3003,2,Rabac1-201,593,Rabac1-201;Rabac1-204;Rabac1-205;Rabac1-203;Rabac1-206;Rabac1-202,Rabac1;Rabac1;Rabac1;Rabac1;Rabac1;Rabac1,0;-128;-86;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,14470,ENSMUSG00000003380,conserved gene but different region,7,24972003,24972287,285,*,285,27,0.652631579,0.89633081,0.094736842,3.34E-20,CpGisland,TRUE,U1,Pr-A
21015,cg01784909,-0.00000341,0.00000181,-1.882559388,0.060696472,loss,ns,0.00000231,0.00000308,0.750937173,0.453260109,pos,ns,0.001764031,0.000901707,1.956324675,0.051324569,pos,ns,1.289674688,-0.0000813,0.000031,-2.622312246,0.009164828,neg,ns,0.956641611,Dcdc5,Dcdc5_Intron,2,106074544,106074593,106074544,106074545,50,-,CGTATGATGAGTGAAGTGGTTTTGAATATCGCCTTTAGATTCCATGCTGT,"Intron (Dcdc5-203/Dcdc5, intron 6 of 8)",2,106003336,106157718,154383,1,Dcdc5-203,71208,Dcdc5-203;Dcdc5-202,Dcdc5;Dcdc5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,22,329482,ENSMUSG00000074981,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11861,cg12376928,-0.0000116,0.00000215,-5.421226846,0.000000119,loss,yes,0.00000274,0.00000365,0.750897212,0.453284124,pos,ns,-0.000671399,0.001068132,-0.628573558,0.530091124,neg,ns,0.275649467,-0.0000261,0.0000367,-0.711399264,0.47737181,neg,ns,0.95068651,Gm11591,Gm11591_Intergenic_upstream,1,61338591,61338640,61338591,61338592,50,-,CGATTTATAGAGCTGTGTATATCATGATTTTTAGAGAGAACATTACTCCC,Distal Intergenic,1,61196541,61197242,702,2,Gm11591-201,-141398,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,3,100042566,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21423,cg01700964,-0.00000102,0.00000136,-0.755311733,0.45063544,loss,ns,0.00000173,0.0000023,0.750882686,0.453292855,pos,ns,0.000202381,0.00067528,0.299698968,0.764607633,pos,ns,0.116561371,-0.0000137,0.0000232,-0.590148709,0.555520882,neg,ns,0.959743314,Zswim6,Zswim6_Exon,13,107730340,107730389,107730388,107730389,50,+,GAATGTTTTTCTGGATGGATTCTAATACTGTTTCCAGCCTCCGAACATCG,"Exon (Zswim6-204/Zswim6, exon 11 of 13)",13,107724617,107890064,165448,2,Zswim6-204,159675,Zswim6-204;Zswim6-201;Zswim6-203;Zswim6-202,Zswim6;Zswim6;Zswim6;Zswim6,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,14,26,67263,ENSMUSG00000032846,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16305,cg02151802,0.000000472,0.00000232,0.203707523,0.83871572,gain,ns,0.00000296,0.00000394,0.750864032,0.453304065,pos,ns,0.001917811,0.001153763,1.662222915,0.097478864,pos,ns,1.01108954,-0.0000607,0.0000397,-1.529772076,0.127092905,neg,ns,0.960038997,Mrm1,Mrm1_Intergenic_downstream,11,84726086,84726135,84726134,84726135,50,-,ACCAGGAGTCAGGTGATGGGTTCCTTCCGTCTACGCCTATCCGTTAGCCG,Distal Intergenic,11,84814743,84815390,648,2,Mrm1-203,89304,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,37,42,217038,ENSMUSG00000018405,conserved gene and region,11,84726113,84726148,36,*,36,6,0.722222222,1.411764706,0.166666667,0.00000387,CpGisland,TRUE,U11,Tr-P
2805,cg01795521,0.000000438,0.00000104,0.420213056,0.674620931,gain,ns,0.00000133,0.00000177,0.750846205,0.45331478,pos,ns,0.001062379,0.000518986,2.047026108,0.041498353,pos,ns,1.381969137,-0.000023,0.0000178,-1.28795124,0.198723505,neg,ns,0.967096389,Comtd1,Comtd1_Promoter,14,21851093,21851142,21851093,21851094,50,+,CGCTCTGCTTCCTGATTATTGAATTTTTATGGCCTGGTAATTAATTGCAG,Promoter (2-3kb),14,21845855,21848977,3123,2,Comtd1-202,-2116,Comtd1-202;Comtd1-201;Comtd1-203;Comtd1-204,Comtd1;Comtd1;Comtd1;Comtd1,-2116;-2199;-3283;-2406,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,3,13,69156,ENSMUSG00000021773,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
26947,cg05052194,-0.000000946,0.00000221,-0.42804591,0.66891492,loss,ns,0.00000282,0.00000375,0.750845879,0.453314976,pos,ns,0.0023626,0.001099418,2.148954726,0.032412049,pos,ns,1.489293515,-0.0000496,0.0000378,-1.311311367,0.190723011,neg,ns,0.08498856,Ski,Ski_Exon,4,155222428,155222477,155222476,155222477,50,-,CGAGCTCATGGAGCTCAGGTGGAACTGCTCCAGCGTCTTCTGCAGCCCCG,Promoter (<=1kb),4,155154075,155222535,68461,2,Ski-202,58,Ski-202;Ski-201,Ski;Ski,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,8,20481,ENSMUSG00000029050,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
25478,cg24813264,0.0000182,0.0000145,1.249711561,0.2123476,gain,ns,-0.0000185,0.0000247,-0.750832594,0.45332296,neg,ns,-0.014389037,0.007230094,-1.99015914,0.047451449,neg,ns,1.323750525,0.000187505,0.000248642,0.754115186,0.451352489,pos,ns,0.868762501,Plp1,Plp1_Exon,X,136832046,136832095,136832046,136832047,50,+,CGCAGTCAGGCAGATCTTTGGCGACTACAAGACCACCATCTGCGGCAAGG,"Exon (Plp1-201/Plp1, exon 3 of 7)",20,136822671,136839733,17063,1,Plp1-201,9375,Plp1-201;Plp1-202;Plp1-203;Plp1-204,Plp1;Plp1;Plp1;Plp1,0;0;0;-1156,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,8,18823,ENSMUSG00000031425,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3132,cg27376149,-0.0000127,0.00000366,-3.473235951,0.000587379,loss,ns,0.00000466,0.00000621,0.750831718,0.453323487,pos,ns,-0.001936287,0.001820058,-1.063860126,0.288220046,neg,ns,0.540275817,0.0000551,0.0000626,0.879624822,0.37974394,pos,ns,0.901779243,Nol4,Nol4_Exon,18,22921874,22921923,22921922,22921923,50,-,ATGCATTCTTTTCTGGCACTCTGAGCAGCTCATTAGAAATCGTGTCACCG,"Exon (Nol4-202/Nol4, exon 3 of 11)",18,22693381,23038656,345276,2,Nol4-202,116733,Nol4-202;Nol4-204;Nol4-208;Nol4-206;Nol4-209;Nol4-205,Nol4;Nol4;Nol4;Nol4;Nol4;Nol4,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,16,21,319211,ENSMUSG00000041923,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2981,cg07800618,0.0000268,0.00000401,6.680540059,1.10E-10,gain,yes,-0.00000511,0.0000068,-0.75060464,0.453459977,neg,ns,0.001742026,0.001993497,0.873854,0.382874206,pos,ns,0.416943891,-0.0000496,0.0000686,-0.724121713,0.469537126,neg,ns,0.788576629,Lrmda,Lrmda_Intron,14,22241830,22241879,22241830,22241831,50,+,CGAGGGGAAATAGAAACAGATCAAAATGTTTGTATAGTGGGCAAAATGCA,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,222118,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206,Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6595,cg19873240,0.0000477,0.00000623,7.663114989,2.35E-13,gain,yes,-0.00000794,0.0000106,-0.750476541,0.453536984,neg,ns,0.004171555,0.003098406,1.346355128,0.179171625,pos,ns,0.746730767,-0.000153198,0.000106554,-1.437747647,0.151514325,neg,ns,0.078601562,Gm37013,Gm37013_Exon,18,37815815,37815864,37815815,37815816,50,-,CGAGAGGCACTGTGTGGGCTCAGTGCCAGCTGCATCGTGCCCCTGGAGTT,"Exon (Pcdhgc4-201/Pcdhgc4, exon 1 of 4)",18,36969916,37833296,863381,1,Gm37013-201,845899,Gm37013-201;Gm37388-201;Gm42416-201;Pcdhga1-201;Pcdhga10-201;Pcdhga11-201;Pcdhga12-201;Pcdhga2-201;Pcdhga3-201;Pcdhga4-201;Pcdhga5-201;Pcdhga6-201;Pcdhga7-201;Pcdhga8-201;Pcdhga9-201;Pcdhgb1-201;Pcdhgb2-202;Pcdhgb4-202;Pcdhgb5-201;Pcdhgb6-201;Pcdhgb7-201;Pcdhgb8-201;Pcdhgc3-201;Pcdhgc3-202;Pcdhgc4-201;Pcdhgc4-203;Pcdhgc4-202;Pcdhgc5-201;Pcdhgc5-203;Pcdhgc5-204;Pcdhgc5-202,Gm37013;Gm37388;Gm42416;Pcdhga1;Pcdhga10;Pcdhga11;Pcdhga12;Pcdhga2;Pcdhga3;Pcdhga4;Pcdhga5;Pcdhga6;Pcdhga7;Pcdhga8;Pcdhga9;Pcdhgb1;Pcdhgb2;Pcdhgb4;Pcdhgb5;Pcdhgb6;Pcdhgb7;Pcdhgb8;Pcdhgc3;Pcdhgc3;Pcdhgc4;Pcdhgc4;Pcdhgc4;Pcdhgc5;Pcdhgc5;Pcdhgc5;Pcdhgc5,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;-3649;-3688;-3702;-3790,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,14,100384868,ENSMUSG00000103458,mapped to different genes,18,37815685,37815993,309,*,309,20,0.563106796,0.825320513,0.064724919,7.64E-12,CpGisland,TRUE,U3,Pr-B
18548,cg09681972,0.0000386,0.00000398,9.700280176,1.33E-19,gain,yes,-0.00000507,0.00000676,-0.750466849,0.453542811,neg,ns,0.003834873,0.001980651,1.936168074,0.053755923,pos,ns,1.269573676,-0.00000994,0.0000681,-0.145897428,0.884097185,neg,ns,0.154503387,Hoxb8,Hoxb8_Exon,11,96284201,96284250,96284201,96284202,50,-,CGCTACCAGACCCTGGAGCTGGAGAAGGAGTTCCTATTTAATCCCTATCT,"Exon (Hoxb8-201/Hoxb8, exon 2 of 2)",11,96281905,96285315,3411,1,Hoxb8-201,2296,Hoxb7-201;Hoxb7-202;Hoxb8-201;Hoxb8-202;Hoxb8-203,Hoxb7;Hoxb7;Hoxb8;Hoxb8;Hoxb8,0;-4465;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,26,15416,ENSMUSG00000056648,mapped to different genes,11,96284141,96284202,62,*,62,7,0.709677419,0.96875,0.112903226,0.00000583,CpGisland,TRUE,U3,Pr-B
14028,cg18758604,-0.0000209,0.00000587,-3.562917805,0.000424449,loss,ns,0.00000749,0.00000998,0.750464282,0.453544354,pos,ns,-0.000494856,0.002922884,-0.169303927,0.865668009,neg,ns,0.062648632,-0.000131158,0.000100518,-1.304821702,0.192921335,neg,ns,0.897090641,1700086L19Rik,1700086L19Rik_Exon,12,74295362,74295411,74295362,74295363,50,+,CGAAAGTAGCCTACTTTAAGAGAAAATATGCAGAAGAAGAAGATTTACAT,"Exon (1700086L19Rik-201/1700086L19Rik, exon 2 of 3)",12,74284242,74295927,11686,1,1700086L19Rik-201,11120,1700086L19Rik-201;1700086L19Rik-203;1700086L19Rik-202,1700086L19Rik;1700086L19Rik;1700086L19Rik,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,74284,ENSMUSG00000071265,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15065,cg02088759,0.000000167,0.000000989,0.169379932,0.86560828,gain,ns,0.00000126,0.00000168,0.750450253,0.453552788,pos,ns,0.001282161,0.000492034,2.605836532,0.00960741,pos,ns,2.017393658,-0.0000367,0.0000169,-2.168165472,0.030906569,neg,ns,0.967945793,Setbp1,Setbp1_threeUTR,18,78751223,78751272,78751223,78751224,50,-,CGATATATTACAGTTCGAGTTTCTAGGCACTGTGATGACATTATCTGTAA,3' UTR,18,78750380,79109391,359012,2,Setbp1-201,358119,Setbp1-201,Setbp1,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,9,240427,ENSMUSG00000024548,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14013,cg09572367,-0.00000572,0.00000441,-1.296985702,0.195600584,loss,ns,-0.00000562,0.0000075,-0.750264864,0.453664251,neg,ns,0.001177243,0.002196041,0.53607528,0.592290958,pos,ns,0.227464897,0.0000231,0.0000755,0.306185561,0.759668895,pos,ns,0.862004831,Memo1,Memo1_Exon,17,74225430,74225479,74225478,74225479,50,-,ACCCCAATGGCAGAAATCAGAAGAAACCACAAAGAGATTACTAGGATCCG,"Exon (Memo1-210/Memo1, exon 6 of 9)",17,74199036,74294863,95828,2,Memo1-210,69384,Memo1-210;Memo1-208;Memo1-201;Memo1-204;Memo1-206;Memo1-203;Memo1-209,Memo1;Memo1;Memo1;Memo1;Memo1;Memo1;Memo1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,76890,ENSMUSG00000058704,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24766,cg06922797,-0.0000642,0.00000905,-7.088268891,9.21E-12,loss,yes,0.0000115,0.0000154,0.750239923,0.453679247,pos,ns,-0.011294175,0.004505853,-2.506556305,0.012703085,neg,ns,1.896090798,0.000200888,0.000154956,1.29642025,0.195794976,pos,ns,0.897005549,Ankrd52,Ankrd52_Exon,10,128388892,128388941,128388940,128388941,50,+,CGTGCCCAGGACATGAAGATTGTCTGGAGTTGTTACTTGAACACAGCCCG,"Exon (Ankrd52-201/Ankrd52, exon 22 of 28)",10,128377119,128394006,16888,1,Ankrd52-201,11773,Ankrd52-203;Ankrd52-201;Ankrd52-202,Ankrd52;Ankrd52;Ankrd52,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,12,237615,ENSMUSG00000014498,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15987,cg16681356,2.67E-08,0.00000258,0.010315703,0.991776042,gain,ns,0.00000329,0.00000439,0.750216064,0.453693594,pos,ns,0.001376158,0.001286318,1.069842578,0.285522461,pos,ns,0.544359721,-0.0000661,0.0000442,-1.493272922,0.136382825,neg,ns,0.852399182,Rfx1,Rfx1_Exon,8,84090993,84091042,84091041,84091042,50,-,AGCTCACCCCTGCTGCGGCTGATGGAGGACCAGCAGCACATGGCCATGCG,"Exon (Rfx1-204/Rfx1, exon 11 of 21)",8,84066834,84096459,29626,1,Rfx1-204,24159,Rfx1-204;Rfx1-203;Rfx1-201,Rfx1;Rfx1;Rfx1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,4,19724,ENSMUSG00000031706,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25403,cg16484178,-0.00000331,0.00000169,-1.953004621,0.051718563,loss,ns,-0.00000216,0.00000288,-0.750149765,0.45373346,neg,ns,-0.000194508,0.000842342,-0.230913755,0.817534128,neg,ns,0.087494109,0.0000331,0.000029,1.143934706,0.253533258,pos,ns,0.959701733,Cux1,Cux1_threeUTR,5,136272777,136272826,136272825,136272826,50,-,TCATCCAAAGATGTTGACCTAAGACAAAGGTTTCAATGATACACAATACG,3' UTR,5,136248135,136360018,111884,2,Cux1-205,87192,Cux1-205;Cux1-207;Cux1-211;Cux1-203;Cux1-213;Cux1-201;Cux1-204;Cux1-209;Cux1-212;Cux1-206;Cux1-202,Cux1;Cux1;Cux1;Cux1;Cux1;Cux1;Cux1;Cux1;Cux1;Cux1;Cux1,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,8,21,13047,ENSMUSG00000029705,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15800,cg23035839,-0.00000523,0.00000149,-3.500679202,0.00053217,loss,ns,0.0000019,0.00000254,0.749989052,0.453830107,pos,ns,0.001127938,0.000743274,1.5175268,0.130152832,pos,ns,0.885546376,-0.0000322,0.0000256,-1.260743797,0.208349222,neg,ns,0.054990041,Dpf3,Dpf3_Promoter,12,83487464,83487513,83487512,83487513,50,+,AATGTAACAATTTTCTTCTTGTTAATTGCATCTCCTGACATTTCTGCGCG,Promoter (<=1kb),12,83213751,83487716,273966,2,Dpf3-207,203,Dpf3-207;Dpf3-206,Dpf3;Dpf3,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,2,16,70127,ENSMUSG00000021221,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
13902,cg16701356,0.0000131,0.000012,1.098268516,0.27293953,gain,ns,-0.0000152,0.0000203,-0.74992569,0.453868215,neg,ns,-0.01267484,0.005949683,-2.130338752,0.033930721,neg,ns,1.469406906,0.000286161,0.000204609,1.39857615,0.16293973,pos,ns,0.370106744,Sp9,Sp9_Intron,2,73278469,73278518,73278469,73278470,50,-,CGCCCATTTGTGTAATTGGTATACTAAGTGTTTATTTTAAGTGAGAATAA,"Intron (Sp9-202/Sp9, intron 1 of 2)",2,73271966,73284706,12741,1,Sp9-202,6503,Cir1-201;Sp9-201;Sp9-202,Cir1;Sp9;Sp9,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,21,381373,ENSMUSG00000068859,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
17981,cg26727679,0.0000135,0.0000125,1.078178249,0.281792451,gain,ns,-0.000016,0.0000213,-0.74987747,0.453897216,neg,ns,-0.011662129,0.006246076,-1.867112947,0.062829521,neg,ns,1.201836254,0.000324943,0.000214802,1.512757231,0.131360115,pos,ns,0.201703441,Car10,Car10_Exon,11,93100247,93100296,93100295,93100296,50,-,CTTTTTCTTCTTCAAGCCAATTTCATCGTCTGCATATCAGGTACGGGACG,"Exon (Car10-204/Car10, exon 2 of 5)",11,93098404,93368999,270596,1,Car10-204,1843,Car10-207;Car10-204;Car10-205;Car10-201;Car10-203;Car10-202;Car10-206,Car10;Car10;Car10;Car10;Car10;Car10;Car10,2219;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,7,72605,ENSMUSG00000056158,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
13854,cg08495446,0.000000619,0.000000356,1.737366127,0.083315745,gain,ns,-0.000000454,0.000000605,-0.749844872,0.453916822,neg,ns,-0.0000132,0.000177318,-0.074301463,0.940818435,neg,ns,0.026494181,-0.00000341,0.0000061,-0.559677547,0.576103558,neg,ns,0.00829528,Six4,Six4_Exon,12,73112480,73112529,73112528,73112529,50,+,GTAGAGCTCCTTGAGCGCGTTGCGCGACTTCTCCTTGAAACAATACACCG,Promoter (<=1kb),12,73099609,73113425,13817,2,Six4-201,896,Six4-201;Six4-202,Six4;Six4,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,8,20474,ENSMUSG00000034460,conserved gene and region,12,73112336,73112699,364,*,364,37,0.648351648,0.970666667,0.101648352,1.06E-28,CpGisland,TRUE,U3,Pr-B
14200,cg09355771,0.0000222,0.00000395,5.614040472,4.39E-08,gain,yes,-0.00000503,0.00000671,-0.749826574,0.453927828,neg,ns,0.005380937,0.00196707,2.735508194,0.006587163,pos,ns,2.181301589,-0.000146887,0.0000676,-2.171360527,0.030662125,neg,ns,0.068368038,Hoxd3,Hoxd3_Exon,2,74753164,74753213,74753212,74753213,50,+,GTTAGTTCTATTAAGAGTTCATCAATCACCCGGTGTGCACTTTTCGCTCG,"Exon (Haglr-203/Haglr-203, exon 1 of 4)",2,74745722,74748442,2721,1,Hoxd3-206,7442,Hoxd3-203;Hoxd3-206,Hoxd3;Hoxd3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,24,15434,ENSMUSG00000079277,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
12892,cg27504017,-0.0000111,0.00000912,-1.218029982,0.224138815,loss,ns,0.0000116,0.0000155,0.749795212,0.453946692,pos,ns,0.004025033,0.004537238,0.8871109,0.375706905,pos,ns,0.425150824,-0.000340268,0.000156035,-2.180715088,0.029956005,neg,ns,0.835807096,Erbb4,Erbb4_Exon,1,68040171,68040220,68040219,68040220,50,+,TATTTTGTGCTGTACTCCTGCAGGTAGTCTGGGTGCTGAAGGGTGCTCCG,"Exon (Erbb4-201/Erbb4, exon 28 of 28)",1,68032186,69107756,1075571,2,Erbb4-201,1067536,Erbb4-201;Erbb4-202,Erbb4;Erbb4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,13,13869,ENSMUSG00000062209,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22577,cg27276843,0.0000204,0.0000143,1.425240191,0.155093827,gain,ns,0.0000183,0.0000243,0.749781778,0.453954772,pos,ns,0.011870994,0.007131331,1.664625305,0.096997883,pos,ns,1.013237743,-0.000298558,0.000245246,-1.217384386,0.224383887,neg,ns,0.468117001,Gm47891,Gm47891_Intergenic_upstream,13,115265936,115265985,115265936,115265937,50,-,CGATGTAGATTACTGACTTTTGGCTAAATGCTACTCAACCAGATAAGGTC,Distal Intergenic,13,115282201,115282675,475,1,Gm47891-201,-16265,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24644,cg06782204,-0.00000164,0.00000672,-0.244256876,0.807193462,loss,ns,0.00000856,0.0000114,0.749760584,0.453967521,pos,ns,-0.004299037,0.003343855,-1.285653041,0.19952373,neg,ns,0.700005444,0.0000183,0.000114995,0.159487721,0.873388493,pos,ns,0.837304329,Gm34091,Gm34091_Intergenic_downstream,6,127418127,127418176,127418175,127418176,50,+,ATAGACACTGGGAGGCCTCAAACAGAATAAATGCTTGAACTTTATCCACG,Distal Intergenic,6,127411130,127411733,604,1,Gm34091-201,6997,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,5,102637222,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14400,cg25521046,-0.0000293,0.0000175,-1.675713526,0.09480258,loss,ns,0.0000223,0.0000298,0.749682926,0.454014234,pos,ns,-0.016041634,0.008716648,-1.840344449,0.066673415,neg,ns,1.176047301,0.000217555,0.000299765,0.725750855,0.468539059,pos,ns,0.563004032,Siah3,Siah3_Promoter,14,75455895,75455944,75455943,75455944,50,-,CACTGCTGCAAGATTCTAACCGTCTTATTTTGATGATGAATATGAAGGCG,Promoter (<=1kb),14,75455982,75529708,73727,1,Siah3-201,-87,Siah3-201,Siah3,-38,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,4,4,380918,ENSMUSG00000091722,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
19088,cg12575233,0.00000247,0.00000169,1.464061203,0.144190517,gain,ns,-0.00000214,0.00000286,-0.749285489,0.454253344,neg,ns,0.002210374,0.000838659,2.63560622,0.008821141,pos,ns,2.054475252,-0.0000396,0.0000288,-1.372906198,0.170773808,neg,ns,0.045919403,Ppp1r1b,Ppp1r1b_Promoter,11,98339299,98339348,98339347,98339348,50,-,GGCCCATTTTCATTCTGCATAAAATTTTAATGGTCTCTCTGGCTGATCCG,Promoter (9-10kb),11,98348404,98357796,9393,1,Ppp1r1b-201,-9105,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,16,16,19049,ENSMUSG00000061718,conserved gene and region,11,98339347,98339463,117,*,117,11,0.717948718,0.783323189,0.094017094,2.09E-08,CpGisland,TRUE,U3,Pr-B
27770,cg05193512,0.00000287,0.00000315,0.910650705,0.363186979,gain,ns,0.00000401,0.00000536,0.749135108,0.454343836,pos,ns,0.003960738,0.001569822,2.523049723,0.012134139,pos,ns,1.915991033,-0.0000373,0.000054,-0.691170447,0.489975678,neg,ns,0.064008347,Tgfb2,Tgfb2_Exon,1,186706037,186706086,186706037,186706038,50,+,CGTGTCTGCCTTCAACAAAGTGACGTGCTAGGATTACAGTCAGAAGTCCT,Promoter (<=1kb),1,186622792,186705989,83198,2,Tgfb2-201,-48,Tgfb2-201;Tgfb2-206;Tgfb2-203,Tgfb2;Tgfb2;Tgfb2,0;0;-1704,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,4,21808,ENSMUSG00000039239,mapped to different genes,1,186705879,186706159,281,*,281,13,0.565836299,0.581873208,0.046263345,0.00000309,CpGisland,TRUE,U3,Pr-B
23064,cg16066439,0.00000268,0.00000309,0.867241542,0.386480468,gain,ns,-0.00000393,0.00000525,-0.749134638,0.454344119,neg,ns,0.001465576,0.001537794,0.953037941,0.341313356,pos,ns,0.466846717,-0.0000835,0.0000529,-1.578879978,0.115383403,neg,ns,0.915344531,Taok3,Taok3_Exon,5,117251027,117251076,117251027,117251028,50,+,CGCATGCCAACAACTCGTCCATCGAGCTGGAGAAGCTGGCCAAGAAGCAA,"Exon (Taok3-203/Taok3, exon 15 of 21)",5,117120129,117275217,155089,1,Taok3-203,130898,Taok3-203;Taok3-210;Taok3-201;Taok3-208;Taok3-202,Taok3;Taok3;Taok3;Taok3;Taok3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,20,330177,ENSMUSG00000061288,conserved gene and region,5,117250755,117251050,296,*,296,22,0.648648649,0.709368192,0.074324324,3.15E-14,CpGisland,TRUE,U10,Tr-S
15075,cg03044694,0.0000502,0.0000036,13.94120059,1.25E-34,gain,yes,0.00000458,0.00000611,0.748963044,0.454447389,pos,ns,0.000237498,0.001790465,0.132645999,0.89455941,pos,ns,0.048390812,0.000222175,0.0000616,3.608256743,0.000359249,pos,ns,0.070505854,Zfp827,Zfp827_Promoter,8,79028246,79028295,79028246,79028247,50,+,CGCTGCCCTTTGATCCCGACATTAGTGTTAGGGGCTCGGAGACACAGAGC,Promoter (<=1kb),8,79028437,79071837,43401,1,Zfp827-201,-142,Zfp827-201;Zfp827-202;Zfp827-203;Zfp827-209,Zfp827;Zfp827;Zfp827;Zfp827,0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,10,28,622675,ENSMUSG00000071064,conserved gene and region,8,79028199,79028434,236,*,236,23,0.588983051,1.130833333,0.097457627,1.44E-17,CpGisland,TRUE,U1,Pr-A
14632,cg09667164,0.00000291,0.00000251,1.157335813,0.248026148,gain,ns,0.0000032,0.00000427,0.748838433,0.454522392,pos,ns,0.001227589,0.001250528,0.981656897,0.327034401,pos,ns,0.485406561,-0.00000138,0.000043,-0.031986033,0.974503773,neg,ns,0.95615023,Ttn,Ttn_Exon,2,76977110,76977159,76977158,76977159,50,-,GCAGTACTAGTCGCTTGTCCAGATCCATTGGTGGCTTTCAGGGAATATCG,"Exon (Ttn-201/Ttn, exon 3 of 191)",2,76703980,76982455,278476,2,Ttn-201,5296,Ttn-201;Ttn-203;Ttn-205;Ttn-204;Ttn-202;Ttn-207;Ttn-215;Ttn-217,Ttn;Ttn;Ttn;Ttn;Ttn;Ttn;Ttn;Ttn,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,12,22138,ENSMUSG00000051747,conserved gene and region,2,76977121,76977267,147,*,147,10,0.571428571,0.835227273,0.068027211,0.00000233,CpGisland,TRUE,U15,NS
13402,cg05155965,0.000183673,0.0000174,10.57605988,1.59E-22,gain,yes,-0.0000221,0.0000295,-0.748789696,0.454551728,neg,ns,0.012424164,0.008643663,1.437372617,0.151620727,pos,ns,0.819241426,-0.000476378,0.000297255,-1.602590828,0.110043421,neg,ns,0.093104155,Nr2f2,Nr2f2_Intron,7,70361736,70361785,70361784,70361785,50,+,CTTCTCCGCGATCAGCTCACTGAGCTCTCTATATAGTGAACTTTGACACG,"Intron (Nr2f2-202/Nr2f2, intron 1 of 2)",7,70354439,70366735,12297,2,Nr2f2-202,4950,Nr2f2-201;Nr2f2-202;Nr2f2-205;Nr2f2-204;Nr2f2-206,Nr2f2;Nr2f2;Nr2f2;Nr2f2;Nr2f2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,69,11819,ENSMUSG00000030551,conserved gene and region,7,70361690,70362245,556,*,556,73,0.701438849,1.072168216,0.131294964,3.37E-65,CpGisland,TRUE,U1,Pr-A
22572,cg23740045,0.0000119,0.0000108,1.108658486,0.268436904,gain,ns,-0.0000137,0.0000183,-0.748751712,0.454574592,neg,ns,0.021967143,0.005358566,4.099444194,0.0000529,pos,ns,4.276141025,-0.001361597,0.000184281,-7.388712466,1.38E-12,neg,yes,0.474513411,Syn2,Syn2_Intron,6,115225580,115225629,115225628,115225629,50,-,TTTCTTACACTTAGGCACATTAAAACTCCTCTGCCACTTTTCTGCCCACG,"Intron (Syn2-205/Syn2, intron 1 of 10)",6,115134902,115275091,140190,1,Syn2-205,90678,Gm17482-201;Syn2-205;Syn2-202;Syn2-201;Syn2-203;Syn2-204,Gm17482;Syn2;Syn2;Syn2;Syn2;Syn2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,3,20965,ENSMUSG00000009394,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2444,cg21005654,-0.0000374,0.000014,-2.661279906,0.00818998,loss,ns,0.0000179,0.0000239,0.748712721,0.454598064,pos,ns,-0.015588713,0.00698984,-2.23019596,0.026450075,neg,ns,1.577573089,0.000418127,0.00024038,1.739442748,0.082949486,pos,ns,0.176962824,Ptf1a,Ptf1a_Intergenic_downstream,2,19455293,19455342,19455293,19455294,50,-,CGATACAATATGTTTCCATGATGCACTTAATGTGCTAGGGACATAGAACT,Distal Intergenic,2,19445663,19447501,1839,1,Ptf1a-201,9679,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,14,21,19213,ENSMUSG00000026735,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
23461,cg13808339,-0.000013,0.0000126,-1.02513793,0.306097372,loss,ns,-0.0000161,0.0000215,-0.748504452,0.454723447,neg,ns,0.003718127,0.006291613,0.590965655,0.554974055,pos,ns,0.25572732,-0.000505801,0.000216368,-2.337686899,0.02003946,neg,ns,0.26712229,Gm13983,Gm13983_Intergenic_upstream,2,118510509,118510558,118510557,118510558,50,-,GACCCAGACAATGGGCCTTGGCAAGGAGTTAATGGGCTGGGCCTCTCGCG,Distal Intergenic,2,118483313,118484177,865,2,Gm13983-201,-26381,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,668859,NA,mapped to different genes,2,118510436,118510646,211,*,211,18,0.682464455,0.732780243,0.085308057,8.74E-13,CpGisland,TRUE,U11,Tr-P
8566,cg00037619,-0.0000313,0.0000108,-2.908305095,0.003896375,loss,ns,0.0000137,0.0000183,0.748449623,0.454756459,pos,ns,-0.013409298,0.005363659,-2.500028344,0.012934744,neg,ns,1.888242164,0.000394391,0.000184456,2.138134054,0.033287505,pos,ns,0.886382508,Btrc,Btrc_Intergenic_upstream,19,45338511,45338560,45338511,45338512,50,+,CGTTCGCCTGATCCTTACACAAAGTCATATATTTTACATGAGGACGAGCT,Distal Intergenic,19,45363734,45507736,144003,1,Btrc-204,-25174,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,98,12234,ENSMUSG00000025217,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26242,cg22292910,0.000105359,0.000017,6.183234042,1.98E-09,gain,yes,-0.0000217,0.0000289,-0.748368002,0.454805604,neg,ns,0.03259171,0.008480724,3.84303388,0.000147432,pos,ns,3.83140947,-0.000979405,0.000291651,-3.35813511,0.000882578,neg,ns,0.260713417,Vps13d,Vps13d_Intron,4,145034797,145034846,145034845,145034846,50,+,AAAGTCCACTGCGTGAACTTGGAATGACCCCAGCTGCAGAGTCACTGGCG,"Intron (Vps13d-202/Vps13d, intron 65 of 69)",4,144972622,145195005,222384,2,Vps13d-202,160159,Vps13d-202;Vps13d-203;Vps13d-201;Vps13d-210;Vps13d-205;Vps13d-207,Vps13d;Vps13d;Vps13d;Vps13d;Vps13d;Vps13d,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,10,230895,ENSMUSG00000020220,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U5,En-Sd
12835,cg08865644,-0.0000442,0.0000113,-3.909335375,0.000113713,loss,ns,-0.0000144,0.0000192,-0.748292914,0.454850818,neg,ns,0.024725691,0.005623434,4.39690282,0.0000151,pos,ns,4.820778469,-0.000701637,0.000193389,-3.628104696,0.000333777,neg,ns,0.401481214,Ebf2,Ebf2_Intron,14,67272026,67272075,67272026,67272027,50,+,CGTTGTTTATAAATCAATTAATTTGTAAGTTGAAAGGTCATGCAAAATAT,"Intron (Ebf2-201/Ebf2, intron 7 of 16)",14,67233292,67429777,196486,1,Ebf2-201,38734,Ebf2-201;Ebf2-203;Ebf2-202,Ebf2;Ebf2;Ebf2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,21,13592,ENSMUSG00000022053,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21578,cg23252799,0.0000719,0.0000113,6.338403068,8.18E-10,gain,yes,-0.0000144,0.0000193,-0.748209687,0.454900937,neg,ns,0.020632992,0.005648336,3.652932842,0.000304302,pos,ns,3.516695467,-0.000554217,0.000194246,-2.853175995,0.004619619,neg,ns,0.31895203,Zfhx3,Zfhx3_Intron,8,108436425,108436474,108436425,108436426,50,+,CGTTAGGGACCAATACGGCCTGTTGAAAATCAATTCTGTTGGACCAGTGT,"Intron (Zfhx3-204/Zfhx3, intron 3 of 15)",8,107942644,108961630,1018987,1,Zfhx3-204,493781,Zfhx3-204,Zfhx3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,114,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3128,cg26195623,-0.0000074,0.00000207,-3.565461843,0.000420514,loss,ns,0.00000264,0.00000352,0.748125987,0.454951343,pos,ns,-0.001811584,0.001032287,-1.754922849,0.080260348,neg,ns,1.095498961,-0.0000127,0.0000355,-0.358051196,0.720548679,neg,ns,0.955630409,Trpm3,Trpm3_Exon,19,22897453,22897502,22897501,22897502,50,-,CTTCTTATTTAACTTATGTCTTCTTTCCAAGCGAGAGTATCCAGGTTTCG,"Exon (Trpm3-202/Trpm3, exon 13 of 25)",19,22139046,22995410,856365,1,Trpm3-218,758407,Trpm3-218;Trpm3-202;Trpm3-203;Trpm3-213;Trpm3-222;Trpm3-207;Trpm3-209;Trpm3-214;Trpm3-216;Trpm3-223;Trpm3-224;Trpm3-201;Trpm3-204;Trpm3-206;Trpm3-217,Trpm3;Trpm3;Trpm3;Trpm3;Trpm3;Trpm3;Trpm3;Trpm3;Trpm3;Trpm3;Trpm3;Trpm3;Trpm3;Trpm3;Trpm3,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,12,226025,ENSMUSG00000052387,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21688,cg19654670,-0.000000499,0.000000605,-0.825498642,0.409723359,loss,ns,0.000000769,0.00000103,0.748099296,0.454967417,pos,ns,0.000341165,0.000300984,1.133497459,0.257881242,pos,ns,0.588580246,-0.00000556,0.0000104,-0.536725427,0.591842264,neg,ns,0.981675944,Zfhx3,Zfhx3_Intron,8,108838890,108838939,108838938,108838939,50,-,ACTTTCTAAATCCAAATGTAAGTGACTTGGATTATCCGTGTCACTGAGCG,"Intron (Zfhx3-204/Zfhx3, intron 9 of 15)",8,107942644,108961630,1018987,1,Zfhx3-204,896246,Zfhx3-204;Zfhx3-201,Zfhx3;Zfhx3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,114,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8131,cg03144319,0.000000538,0.00000923,0.058273018,0.953568703,gain,ns,-0.0000117,0.0000157,-0.74804777,0.45499845,neg,ns,0.005515092,0.004596232,1.199915824,0.231088249,pos,ns,0.636222138,-0.000452974,0.000158064,-2.86576463,0.004444462,neg,ns,0.645018159,Ebf1,Ebf1_Intron,11,44766372,44766421,44766372,44766373,50,-,CGTAAACACACAATTAAAGCAGGAATTTGTGATGGATGCAAGGGTTTGAC,"Intron (Ebf1-203/Ebf1, intron 6 of 15)",11,44617317,45004995,387679,1,Ebf1-203,149055,Ebf1-203;Ebf1-202;Ebf1-201,Ebf1;Ebf1;Ebf1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,80,13591,ENSMUSG00000057098,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17293,cg27352625,-0.000109175,0.0000129,-8.451238424,1.14E-15,loss,yes,0.0000164,0.0000219,0.748020935,0.455014612,pos,ns,-0.02305706,0.006429545,-3.586110491,0.000389822,neg,ns,3.409133176,0.000389435,0.000221112,1.761258946,0.079180392,pos,ns,0.794893132,Gm5356,Gm5356_Intergenic_upstream,8,89454837,89454886,89454837,89454838,50,+,CGGGGCAGAGTATTAAGATAGCCTGTTTCTAGTTAGCTGGTCATTAGAGA,Distal Intergenic,8,89186946,89187560,615,2,Gm5356-201,-267277,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,23,23,384862,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23880,cg21153937,-0.00000258,0.00000143,-1.808136853,0.0715542,loss,ns,0.00000182,0.00000243,0.74796986,0.455045375,pos,ns,-0.000737199,0.000710915,-1.036972752,0.300556739,neg,ns,0.52207353,0.0000171,0.0000244,0.700205357,0.484324216,pos,ns,0.057951206,Ttbk2,Ttbk2_fiveUTR,2,120850598,120850647,120850598,120850599,50,+,CGCTATCTTCAGGTTTGCCTGAGAGGGCGAGTTACCGGGAAAGGAGCATC,Promoter (<=1kb),2,120732816,120850604,117789,2,Ttbk2-201,0,Cdan1-207;Ttbk2-202;Ttbk2-203;Ttbk2-201;Ttbk2-206;Ttbk2-204;Ttbk2-205,Cdan1;Ttbk2;Ttbk2;Ttbk2;Ttbk2;Ttbk2;Ttbk2,0;0;0;0;-208;-234;-163,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,1,140810,ENSMUSG00000090100,conserved gene but different region,2,120849916,120850788,873,*,873,87,0.682703322,0.856432462,0.099656357,6.93E-66,CpGisland,TRUE,U2,Pr-W
10961,cg27551316,-0.00000196,0.00000218,-0.897170025,0.370324409,loss,ns,-0.00000277,0.00000371,-0.74777377,0.455163491,neg,ns,-0.001267777,0.001085442,-1.167981932,0.243711545,neg,ns,0.613123896,0.0000275,0.0000373,0.737859969,0.461157712,pos,ns,0.948555564,Tcf7l2,Tcf7l2_Exon,19,55925984,55926033,55925984,55925985,50,+,CGCTCCTAAGAAATGCCGAGCGCGCTTTGGCCTTGATCAACAGAATAACT,"Exon (Tcf7l2-213/Tcf7l2, exon 12 of 14)",19,55741820,55933229,191410,1,Tcf7l2-213,184164,Tcf7l2-213;Tcf7l2-201;Tcf7l2-208;Tcf7l2-211;Tcf7l2-212;Tcf7l2-222;Tcf7l2-215;Tcf7l2-207;Tcf7l2-202;Tcf7l2-209;Tcf7l2-210;Tcf7l2-203,Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,88,21416,ENSMUSG00000024985,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21014,cg10331552,0.0000016,0.00000455,0.352742368,0.724521308,gain,ns,-0.00000577,0.00000772,-0.747656294,0.455234262,neg,ns,0.00208656,0.002262113,0.922394284,0.357040274,pos,ns,0.447282793,-0.000178641,0.0000778,-2.296332712,0.022323637,neg,ns,0.932056651,Dcdc5,Dcdc5_Intron,2,106074487,106074536,106074487,106074488,50,-,CGTATTGGAAAACTACCAAATGTCCCCTGCAAATGGGCCCTATTCAGAAT,"Intron (Dcdc5-203/Dcdc5, intron 6 of 8)",2,106003336,106157718,154383,1,Dcdc5-203,71151,Dcdc5-203;Dcdc5-202,Dcdc5;Dcdc5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,22,329482,ENSMUSG00000074981,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18984,cg04404159,-0.00000164,0.00000242,-0.677749907,0.4984358,loss,ns,0.00000307,0.00000411,0.747639374,0.455244455,pos,ns,0.001223245,0.00120477,1.015334924,0.310737983,pos,ns,0.507605657,-0.0000609,0.0000414,-1.47079435,0.142361029,neg,ns,0.953980675,Fbxl20,Fbxl20_Exon,11,98110935,98110984,98110983,98110984,50,+,CTTAATGCATTGTCTCCCACTCCAAGACATCCACGAAGACTTAACTTTCG,"Exon (Fbxl20-201/Fbxl20, exon 5 of 15)",11,98082556,98149612,67057,2,Fbxl20-201,38628,Fbxl20-201;Fbxl20-202;Fbxl20-207;Fbxl20-203;Fbxl20-206,Fbxl20;Fbxl20;Fbxl20;Fbxl20;Fbxl20,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,72194,ENSMUSG00000020883,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11366,cg21615344,-0.000026,0.00000662,-3.93281917,0.000103632,loss,ns,0.00000841,0.0000113,0.747619233,0.45525659,pos,ns,-0.005709571,0.003296682,-1.731914565,0.084283519,neg,ns,1.074257339,0.0000395,0.000113373,0.348335894,0.727824375,pos,ns,0.757890597,Gm13533,Gm13533_Intergenic_upstream,2,57819197,57819246,57819197,57819198,50,-,CGAGCAGATGAACATGGGACTGTGAACAGGAAGCTGATTATTCCAACACA,Distal Intergenic,2,57643648,57643824,177,2,Gm13533-201,-175422,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,7,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3869,cg17201133,0.000000239,0.0000014,0.170883523,0.864426833,gain,ns,-0.00000178,0.00000238,-0.747545554,0.455300981,neg,ns,-0.00045603,0.000695881,-0.655327781,0.51274274,neg,ns,0.29010048,0.0000201,0.0000239,0.83874541,0.40225847,pos,ns,0.96634066,Zmiz1,Zmiz1_Exon,14,25656852,25656901,25656852,25656853,50,+,CGGTTCAAGACCATGAGTCCCAGCCAGATGATCATGCCCAATGTCATGGA,"Exon (Zmiz1-208/Zmiz1, exon 21 of 24)",14,25459224,25666743,207520,1,Zmiz1-208,197628,Zmiz1-208;Zmiz1-201;Zmiz1-207,Zmiz1;Zmiz1;Zmiz1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,15,328365,ENSMUSG00000007817,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20276,cg21833579,0.0000294,0.00000774,3.803462587,0.000171854,gain,ns,0.00000982,0.0000131,0.747527416,0.455311909,pos,ns,-0.001417624,0.003850515,-0.368164706,0.713001692,neg,ns,0.146909439,0.0000402,0.000132419,0.303210924,0.761932505,pos,ns,0.014035287,Hoxc5,Hoxc5_Exon,15,102981771,102981820,102981819,102981820,50,+,CCAGCGGTTTGGTGCCGGACTGTAGCGATTTTCCGTCCTGTAGCTTCGCG,"Exon (Hoxc9-201/Hoxc9, exon 2 of 3)",15,102967443,103015676,48234,1,Hoxc5-202,14328,Hoxc5-202;Hoxc9-202;Hoxc9-201,Hoxc5;Hoxc9;Hoxc9,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,72,134,15424,ENSMUSG00000022485,conserved gene and region,15,102981651,102982178,528,*,528,70,0.696969697,1.109010712,0.132575758,6.92E-63,CpGisland,TRUE,U3,Pr-B
13081,cg06665099,3.82E-09,0.000000361,0.010588859,0.991558282,gain,ns,-0.000000458,0.000000613,-0.747516923,0.455318231,neg,ns,0.0001865,0.000179526,1.038846658,0.299685642,pos,ns,0.523334064,-0.0000106,0.00000617,-1.723039223,0.08587863,neg,ns,0.008570428,Arf6,Arf6_Exon,12,69373106,69373155,69373106,69373107,50,+,CGCATTATCAATGACCGGGAGATGAGGGACGCCATAATCCTCATCTTCGC,Promoter (<=1kb),12,69372150,69373783,1634,1,Arf6-201,956,Arf6-201;Gm18113-201,Arf6;Gm18113,0;-3083,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,8,11845,ENSMUSG00000044147,conserved gene and region,12,69371680,69373175,1496,*,1496,186,0.703877005,1.010385046,0.124331551,4.87E-160,CpGisland,TRUE,NA,NRS
2411,cg00087116,-0.00000125,0.00000118,-1.057670037,0.29102938,loss,ns,0.0000015,0.000002,0.747469059,0.455347071,pos,ns,0.001122489,0.000587238,1.911472292,0.056865809,pos,ns,1.24514878,0.00000171,0.0000202,0.084630472,0.9326098,pos,ns,0.034549801,Fosb,Fosb_fiveUTR,7,19309427,19309476,19309475,19309476,50,-,AACATTTCCCTGGGCACAGGGGGGCCCCTGTGACCACGCTGAGGTCGCCG,Promoter (<=1kb),7,19302696,19310051,7356,2,Fosb-201,575,Fosb-201;Fosb-202;Fosb-203;Fosb-205;Fosb-207;Fosb-206;Fosb-204,Fosb;Fosb;Fosb;Fosb;Fosb;Fosb;Fosb,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,13,14282,ENSMUSG00000003545,mapped to different genes,7,19309463,19309595,133,*,133,13,0.609022556,1.081977472,0.097744361,4.22E-10,CpGisland,TRUE,NA,NRS
16718,cg14577260,-0.00000321,0.00000294,-1.091769475,0.275782218,loss,ns,0.00000373,0.00000499,0.747406939,0.455384501,pos,ns,0.001484403,0.001463175,1.014508248,0.311131442,pos,ns,0.507056098,-0.000035,0.0000503,-0.695212025,0.487443217,neg,ns,0.936003177,Adamtsl1,Adamtsl1_Exon,4,86247944,86247993,86247992,86247993,50,-,CCCTGATGACTCCCCTTGCTTCTGTAGGTGGGAGGCCACCCCATGGACCG,"Exon (Adamtsl1-203/Adamtsl1, exon 10 of 28)",4,86053915,86428382,374468,1,Adamtsl1-203,194029,Adamtsl1-203;Adamtsl1-201;Adamtsl1-209;Adamtsl1-207,Adamtsl1;Adamtsl1;Adamtsl1;Adamtsl1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,10,77739,ENSMUSG00000066113,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15516,cg02029630,0.00000285,0.0000028,1.019063095,0.308967649,gain,ns,0.00000355,0.00000475,0.747377354,0.455402329,pos,ns,0.002354126,0.001391116,1.692256794,0.091601807,pos,ns,1.038095959,-0.0001127,0.0000478,-2.355760202,0.019107336,neg,ns,0.942097309,Gm7503,Gm7503_Intron,18,81510115,81510164,81510163,81510164,50,+,GTTTAATGGCATTAGCATTTTGTTTGAAATTGTAATAAACGTACATCCCG,"Intron (Gm50412-201/Gm50412-201, intron 2 of 2)",18,80997003,80997383,381,2,Gm7503-201,-512732,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,21,665124,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10757,cg02894657,0.00000341,0.000000671,5.089696718,0.000000623,gain,yes,-0.000000851,0.00000114,-0.747003921,0.455627384,neg,ns,0.000462559,0.000333874,1.385431259,0.166916638,pos,ns,0.777500371,-0.0000145,0.0000115,-1.25860749,0.209119164,neg,ns,0.012249789,Jph4,Jph4_Exon,14,55115212,55115261,55115212,55115213,50,+,CGCCTCCCAGCCCCCCACGTAGCAGCCCCCGTCGTCAAAGTCGAACTTGC,"Exon (Jph4-201/Jph4, exon 2 of 6)",14,55106826,55116935,10110,2,Jph4-201,1674,Jph4-201;Jph4-202;Jph4-203;Jph4-204,Jph4;Jph4;Jph4;Jph4,0;0;-4654;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,11,319984,ENSMUSG00000022208,conserved gene and region,14,55114804,55115549,746,*,746,72,0.71849866,0.747869674,0.096514745,1.44E-53,CpGisland,TRUE,U3,Pr-B
6524,cg07766762,-0.00000567,0.0000044,-1.290256621,0.19792315,loss,ns,-0.00000558,0.00000747,-0.746849235,0.455720626,neg,ns,-0.001025755,0.002188407,-0.468722231,0.639597628,neg,ns,0.194093155,-0.0000673,0.0000753,-0.894619758,0.371684446,neg,ns,0.350057636,Tenm2,Tenm2_Intergenic_upstream,11,37609480,37609529,37609528,37609529,50,+,ATATTCATTTCATTCATCATTTAAAGGCAGATAATCAGGAAGTCATTACG,Distal Intergenic,11,36944205,37235964,291760,2,Tenm2-207,-373516,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,9,84,23964,ENSMUSG00000049336,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8667,cg20690201,-0.00000174,0.00000187,-0.928997476,0.35361319,loss,ns,0.00000238,0.00000318,0.746828594,0.455733069,pos,ns,0.000954341,0.000931843,1.024143765,0.306565882,pos,ns,0.51347618,-0.0000374,0.000032,-1.167111977,0.244062116,neg,ns,0.960069248,Gm12161,Gm12161_Intergenic_upstream,11,45514768,45514817,45514816,45514817,50,-,CATTCTCCAGGTAGCTGCCGTCCTCATTTATAATGGCCAGAGGAACTACG,Distal Intergenic,11,45280594,45280954,361,2,Gm12161-201,-233863,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,10,382510,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27712,cg20901186,-0.0000382,0.00000957,-3.994271831,0.0000811,loss,ns,0.0000121,0.0000163,0.74682402,0.455735826,pos,ns,-0.005933125,0.004762585,-1.24577829,0.213786507,neg,ns,0.670019709,-0.000129873,0.000163785,-0.792950234,0.428413269,neg,ns,0.647946774,Phactr3,Phactr3_Exon,2,178256166,178256215,178256166,178256167,50,-,CGAACTCCCCCTGTGAGGAGGAACAGCAAACTGGCCACCCTGGGCAGGAT,"Exon (Phactr3-205/Phactr3, exon 2 of 13)",2,178118975,178338492,219518,1,Phactr3-205,137191,Phactr3-205;Phactr3-204;Phactr3-202;Phactr3-203;Phactr3-201,Phactr3;Phactr3;Phactr3;Phactr3;Phactr3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,5,74189,ENSMUSG00000027525,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22996,cg13338936,-0.0000194,0.0000114,-1.695464371,0.090991426,loss,ns,-0.0000145,0.0000194,-0.746763888,0.455772076,neg,ns,-0.005543948,0.005696663,-0.973192237,0.331216522,neg,ns,0.479888007,-0.0000457,0.000195908,-0.233123498,0.815819361,neg,ns,0.787603722,Gm47912,Gm47912_Intron,13,116633314,116633363,116633314,116633315,50,+,CGAAAATAGAAACTTTATGTTTAATTGATTTATTTGTAATGAATCTGGCT,"Intron (Gm47914-201/Gm47914-201, intron 1 of 1)",13,116361198,116361694,497,2,Gm47912-201,-271620,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,8,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11870,cg13953571,-0.0000276,0.00000849,-3.255155175,0.001258636,loss,ns,-0.0000108,0.0000144,-0.746720475,0.455798249,neg,ns,-0.004921261,0.004225339,-1.164701999,0.245035135,neg,ns,0.61077164,-0.0000611,0.000145309,-0.420154675,0.674663532,neg,ns,0.076181523,Tle3,Tle3_Promoter,9,61370476,61370525,61370524,61370525,50,+,CAAGCACTATTTGCAAGCGGGAGGCTCAGAAGCCTCGGCATTTGTCAGCG,Promoter (1-2kb),9,61372366,61418497,46132,1,Tle3-218,-1841,Tle3-218;Tle3-204;Tle3-201;Tle3-215;Tle3-212;Tle3-208;Tle3-207;Tle3-217;Tle3-202;Tle3-206;Tle3-210;Tle3-205;Tle3-211;Tle3-209,Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3,0;0;0;0;0;0;0;0;0;0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,11,30,21887,ENSMUSG00000032280,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
2731,cg27005345,0.000131347,0.0000103,12.71558774,4.27E-30,gain,yes,-0.0000131,0.0000175,-0.74665904,0.455835288,neg,ns,0.01191308,0.00514114,2.317205954,0.021143747,pos,ns,1.674818056,-0.000185454,0.000176803,-1.048926708,0.295028918,neg,ns,0.125615484,Klhl14,Klhl14_Exon,18,21651456,21651505,21651504,21651505,50,+,TCAGGTGGTAGTTCATGGCGTCCAGCAGCAGCTTCTGGCAGACCGGGTCG,Promoter (<=1kb),18,21550377,21652368,101992,2,Klhl14-201,863,Klhl14-201;Klhl14-202,Klhl14;Klhl14,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,14,38,225266,ENSMUSG00000042514,conserved gene and region,18,21651474,21651709,236,*,236,24,0.669491525,0.908128908,0.101694915,8.84E-19,CpGisland,TRUE,U3,Pr-B
15802,cg25565338,-0.00000211,0.0000011,-1.913509453,0.056603704,loss,ns,0.0000014,0.00000188,0.74661953,0.455859109,pos,ns,0.0000485,0.000549361,0.088199728,0.929774882,pos,ns,0.03162219,0.0000164,0.0000189,0.867729795,0.386213477,pos,ns,0.027419026,Dpf3,Dpf3_Exon,12,83487646,83487695,83487646,83487647,50,+,CGGAATATGTACATTTTTTAGTCTTACTTACGCTTTCAGGGGGTTGTGAA,Promoter (<=1kb),12,83213751,83487716,273966,2,Dpf3-207,21,Dpf3-207;Dpf3-206,Dpf3;Dpf3,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,16,70127,ENSMUSG00000021221,conserved gene but different region,12,83487566,83487704,139,*,139,13,0.54676259,1.273431994,0.09352518,7.48E-10,CpGisland,TRUE,U1,Pr-A
18759,cg20407054,0.0000522,0.00000748,6.972651587,1.88E-11,gain,yes,-0.00000949,0.0000127,-0.746613433,0.455862784,neg,ns,0.002496425,0.003724462,0.670278072,0.503179551,pos,ns,0.298277017,-0.0000715,0.000128084,-0.558101067,0.577178206,neg,ns,0.786961911,Uba3,Uba3_threeUTR,6,97203499,97203548,97203547,97203548,50,+,TGTGTGAAGGGTCCAGATCGCTCGAGGAACTTCTTTACATGGTTCCAGCG,3' UTR,6,97183670,97205560,21891,2,Uba3-202,2012,Uba3-202;Uba3-204;Uba3-201;Uba3-205;Uba3-203,Uba3;Uba3;Uba3;Uba3;Uba3,0;0;0;0;2020,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,4,22200,ENSMUSG00000030061,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
16760,cg24501287,-0.00000935,0.00000674,-1.387439098,0.166304479,loss,ns,0.00000855,0.0000114,0.746612367,0.455863427,pos,ns,0.014239058,0.003353667,4.245816815,0.0000288,pos,ns,4.540323385,-0.000563885,0.000115332,-4.889213972,0.00000163,neg,yes,0.836521467,Lrba,Lrba_Intron,3,86447531,86447580,86447579,86447580,50,-,TAATGTCATTTATTTTGTTTCACTATTGATGGCTTTTCTAATGCCACACG,"Intron (Lrba-202/Lrba, intron 37 of 50)",3,86224680,86746712,522033,1,Lrba-202,222851,Lrba-202;Lrba-204;Lrba-201;Lrba-208,Lrba;Lrba;Lrba;Lrba,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,45,80877,ENSMUSG00000028080,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8367,cg06347640,-0.00000248,0.00000165,-1.497942635,0.135165689,loss,ns,0.0000021,0.00000281,0.746597735,0.45587225,pos,ns,0.000451131,0.000822438,0.548528506,0.583723876,pos,ns,0.233792543,0.00000955,0.0000283,0.337785825,0.735753213,pos,ns,0.949755426,Supt3,Supt3_Intron,17,45054708,45054757,45054708,45054709,50,-,CGCATCTGGAAGTGTTTATTTCAGTGGCGTGTAAGCTATCTGTGGATTTC,"Intron (Supt3-201/Supt3, intron 11 of 11)",17,44777152,45119290,342139,1,Supt3-201,277556,Supt3-201;Supt3-202;Supt3-203,Supt3;Supt3;Supt3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,5,109115,ENSMUSG00000038954,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27034,cg14270175,0.00000629,0.00000475,1.32447754,0.186320101,gain,ns,-0.00000602,0.00000806,-0.746575427,0.455885699,neg,ns,-0.002621393,0.002362603,-1.109535813,0.268059064,neg,ns,0.571769503,0.0000773,0.0000812,0.951152963,0.342267707,pos,ns,0.821702836,Dlgap4,Dlgap4_fiveUTR,2,156748301,156748350,156748301,156748302,50,+,CGTGCCGTTGCTGTCGTTGTCCTTCAATAAGGTTGACTGCATTCAGCCAG,5' UTR,2,156613705,156764361,150657,1,Dlgap4-205,134596,Dlgap4-205;Dlgap4-212;Dlgap4-206;Dlgap4-202;Dlgap4-210;Dlgap4-209;Dlgap4-204;Dlgap4-208;Dlgap4-211;Dlgap4-214;Dlgap4-213;Dlgap4-201;Dlgap4-203,Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,10,17,228836,ENSMUSG00000061689,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
163,cg16498914,-0.00000207,0.00000417,-0.496081766,0.620188258,loss,ns,0.00000529,0.00000708,0.746538007,0.455908262,pos,ns,0.000395722,0.002074553,0.190750387,0.848846021,pos,ns,0.071171083,-0.0000448,0.0000713,-0.627670633,0.530681797,neg,ns,0.900085732,Gria4,Gria4_Exon,9,4432742,4432791,4432790,4432791,50,+,TTTACCCGCTTTTGGTGACATTGAGGCTAACCTTGGAGTCACCTCCCCCG,"Exon (Gria4-204/Gria4, exon 14 of 16)",9,4417896,4796142,378247,2,Gria4-202,363351,Gria4-202;Gria4-204;Gria4-201,Gria4;Gria4;Gria4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,16,18,14802,ENSMUSG00000025892,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9622,cg25749301,0.00000214,0.00000162,1.317286208,0.188715513,gain,ns,-0.00000206,0.00000276,-0.746328997,0.456034297,neg,ns,0.001056503,0.000808203,1.307224575,0.192105209,pos,ns,0.716460858,-0.0000235,0.0000278,-0.845289149,0.398601348,neg,ns,0.971115271,Epc2,Epc2_threeUTR,2,49550984,49551033,49550984,49550985,50,+,CGGGTTGGAAAAAGTCTGACTGTAAGCGTTGGACACCTTCATAGTGTAGT,3' UTR,2,49451486,49551948,100463,1,Epc2-201,99498,Epc2-201,Epc2,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,14,227867,ENSMUSG00000069495,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23228,cg26275987,0.00000456,0.0000012,3.783294481,0.000185727,gain,ns,-0.00000153,0.00000205,-0.74628953,0.456058098,neg,ns,-0.000283065,0.000599656,-0.472044988,0.637226777,neg,ns,0.195705983,0.0000244,0.0000206,1.181156567,0.238445909,pos,ns,0.970645001,Eri3,Eri3_Exon,4,117564748,117564797,117564796,117564797,50,+,GGAGTTCTGCTCCATATCCACCAGAAAGCTGGCGGCCCACGGCTTTGGCG,Promoter (<=1kb),4,117564758,117674297,109540,1,Eri3-206,0,Eri3-201;Eri3-205;Eri3-206,Eri3;Eri3;Eri3,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,97,140546,ENSMUSG00000033423,conserved gene and region,4,117564742,117564808,67,*,67,7,0.641791045,1.015151515,0.104477612,0.00000982,CpGisland,TRUE,U10,Tr-S
19069,cg25102549,-0.0000316,0.00000633,-4.995532418,0.000000982,loss,yes,-0.00000803,0.0000108,-0.746159388,0.456136586,neg,ns,-0.004926703,0.003152404,-1.562840171,0.119110431,neg,ns,0.924050204,0.00000784,0.000108411,0.072362691,0.94235994,pos,ns,0.906470138,Gm12788,Gm12788_Intergenic_upstream,4,98318925,98318974,98318925,98318926,50,+,CGTCATACTTCATAACTTGGGATGATAGGTTTCCAAGTATGGTACAGTGT,Distal Intergenic,4,98352427,98352734,308,1,Gm12788-201,-33453,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13481,cg01483359,-0.000000846,0.0000025,-0.33775683,0.735775044,loss,ns,0.00000317,0.00000426,0.746044164,0.456206085,pos,ns,0.003465686,0.00124675,2.779776369,0.005771976,pos,ns,2.238675494,-0.000115359,0.0000429,-2.690556889,0.007520027,neg,ns,0.943423863,Adam10,Adam10_Exon,9,70746239,70746288,70746287,70746288,50,+,CAGTCATGTTAAAGCGATTGATACAATTTACCAGACCACAGACTTCTCCG,"Exon (Adam10-202/Adam10, exon 7 of 16)",9,70678997,70778382,99386,1,Adam10-202,67242,Adam10-202;Adam10-201;Adam10-203,Adam10;Adam10;Adam10,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,11487,ENSMUSG00000054693,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12215,cg20376868,0.0000116,0.00000611,1.90472021,0.057741809,gain,ns,-0.00000774,0.0000104,-0.745728869,0.456396287,neg,ns,-0.000490402,0.003040185,-0.161306574,0.87195702,neg,ns,0.059504921,0.0000188,0.000104552,0.179973249,0.857291156,pos,ns,0.695856956,Iqch,Iqch_Exon,9,63490709,63490758,63490757,63490758,50,+,TTCTCTGCCTTGTACAATAGACCTTGGCACCATTTCAACTGTTTACTCCG,"Exon (Gm16759-204/Gm16759-204, exon 4 of 4)",9,63421455,63602493,181039,2,Iqch-201,111735,Iqch-201;Iqch-203;Iqch-204;Iqch-202;Iqch-206,Iqch;Iqch;Iqch;Iqch;Iqch,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,22,78250,ENSMUSG00000037801,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14395,cg17397945,-0.000000112,0.00000325,-0.034398331,0.972581653,loss,ns,0.00000412,0.00000552,0.745676826,0.456427686,pos,ns,0.002708682,0.001618386,1.673693823,0.095199444,pos,ns,1.021365588,-0.00000541,0.0000557,-0.097146093,0.922673154,neg,ns,0.064374022,Asic4,Asic4_fiveUTR,1,75450539,75450588,75450587,75450588,50,-,GGCTGACAGCTGTGCTGGTGCTGATAAGGGAAGCCACAAGGAGACGATCG,Promoter (<=1kb),1,75450436,75474340,23905,1,Asic4-202,103,Asic4-202;Asic4-201,Asic4;Asic4,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,11,241118,ENSMUSG00000033007,conserved gene but different region,1,75450377,75450757,381,*,381,30,0.669291339,0.70625309,0.078740158,6.14E-20,CpGisland,TRUE,U3,Pr-B
1241,cg25237839,0.0000826,0.0000092,8.976218359,2.76E-17,gain,yes,0.0000117,0.0000156,0.745635027,0.456452906,pos,ns,0.008182008,0.004578982,1.786861894,0.074936815,pos,ns,1.125304769,-0.000202731,0.000157471,-1.287419596,0.198908412,neg,ns,0.620933487,Bcor,Bcor_Intron,X,12126684,12126733,12126732,12126733,50,-,TGGCTTTCCACATGAGCCTGAAAATGTCGACAAATTTGAAACATCTGCCG,"Intron (Bcor-201/Bcor, intron 1 of 13)",20,12036743,12160355,123613,2,Bcor-201,33622,Bcor-201;Bcor-207;Bcor-205;Bcor-208,Bcor;Bcor;Bcor;Bcor,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,56,74,71458,ENSMUSG00000040363,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
15120,cg14198513,0.00000346,0.00000216,1.606506998,0.109180637,gain,ns,-0.00000273,0.00000366,-0.745528854,0.45651697,neg,ns,0.00426992,0.001073291,3.978342213,0.0000865,pos,ns,4.06321569,-0.000121619,0.0000369,-3.294990007,0.001098321,neg,ns,0.94163465,Wsb1,Wsb1_threeUTR,11,79243472,79243521,79243472,79243473,50,+,CGGTAGCCAGAGATGCCACTCTTTCTGCCCAGCTAACACCATTGTGCGCC,3' UTR,11,79239372,79254671,15300,2,Wsb1-201,11150,Wsb1-201;Wsb1-206;Wsb1-202;Wsb1-207;Wsb1-205;Wsb1-203;Wsb1-204,Wsb1;Wsb1;Wsb1;Wsb1;Wsb1;Wsb1;Wsb1,0;-448;0;-523;0;0;7503,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,7,7,78889,ENSMUSG00000017677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20084,cg13756118,-0.000024,0.00000581,-4.120789848,0.0000485,loss,ns,-0.00000736,0.00000988,-0.745383901,0.456604441,neg,ns,-0.004232679,0.002893607,-1.462769415,0.144543575,neg,ns,0.840001209,0.00000938,0.0000995,0.094228026,0.924988897,pos,ns,0.680834502,Pcbp2,Pcbp2_Exon,15,102485997,102486046,102485997,102485998,50,+,CGTCCATGTGCCTCAACCCTGACCTGGAGGGACCACCTCTAGAGGTGAGA,"Exon (Pcbp2-220/Pcbp2, exon 9 of 12)",15,102470539,102488880,18342,1,Pcbp2-220,15458,Pcbp2-220;Pcbp2-201;Pcbp2-205;Pcbp2-212;Pcbp2-231;Pcbp2-214;Pcbp2-216;Pcbp2-203;Pcbp2-208;Pcbp2-217;Pcbp2-202;Pcbp2-218;Pcbp2-206;Pcbp2-227;Pcbp2-219;Pcbp2-213;Pcbp2-221;Pcbp2-223;Pcbp2-207;Pcbp2-224;Pcbp2-228;Pcbp2-211;Pcbp2-226;Pcbp2-230;Pcbp2-210;Pcbp2-204;Pcbp2-215;Pcbp2-222;Pcbp2-229;Pcbp2-225,Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2,0;0;0;0;0;0;0;0;14929;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,8,18521,ENSMUSG00000056851,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24578,cg04121944,0.00000265,0.000000777,3.408384487,0.000739846,gain,ns,-0.000000984,0.00000132,-0.745264758,0.456676345,neg,ns,0.000260725,0.000386755,0.674134603,0.500728111,pos,ns,0.300398027,-0.00000955,0.0000133,-0.718107473,0.473231859,neg,ns,0.01203442,Maz,Maz_Exon,7,127025389,127025438,127025437,127025438,50,-,CCTTGCGCTTGAAGCGCTGCTGGCACACCGGGCACTGGTAGGGCTTCTCG,"Exon (Maz-203/Maz, exon 2 of 6)",7,127022130,127026526,4397,2,Maz-203,1088,Gm42742-203;Gm42742-204;Gm42742-202;Kif22-202;Kif22-201;Kif22-205;Kif22-206;Maz-203;Maz-201;Maz-204;Maz-202;Maz-206;Maz-205;Prrt2-201;Prrt2-202;Prrt2-205;Prrt2-206,Gm42742;Gm42742;Gm42742;Kif22;Kif22;Kif22;Kif22;Maz;Maz;Maz;Maz;Maz;Maz;Prrt2;Prrt2;Prrt2;Prrt2,0;0;0;3519;17033;2678;7266;0;0;0;0;0;0;0;0;-4433;-4252,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,16,17,17188,ENSMUSG00000030678,conserved gene and region,7,127025353,127025621,269,*,269,30,0.669144981,1.002359955,0.111524164,1.16E-24,CpGisland,TRUE,U1,Pr-A
11222,cg00861348,-0.0000305,0.00000508,-6.005073061,5.35E-09,loss,yes,0.00000643,0.00000863,0.74523664,0.456693315,pos,ns,-0.003099918,0.002529254,-1.225625508,0.221269938,neg,ns,0.655077586,0.00000734,0.000087,0.084366022,0.932819877,pos,ns,0.924769368,Epb41l4b,Epb41l4b_Exon,4,57076999,57077048,57077047,57077048,50,-,TTCCCTACAAACAAACGAAGTGACAATCGGTAGAGGGTTCTAACAGGTCG,"Exon (Epb41l4b-203/Epb41l4b, exon 9 of 26)",4,56991972,57143437,151466,2,Epb41l4b-203,66389,Epb41l4b-203;Epb41l4b-201;Epb41l4b-206;Epb41l4b-205,Epb41l4b;Epb41l4b;Epb41l4b;Epb41l4b,0;0;0;61144,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,54357,ENSMUSG00000028434,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20003,cg25616152,-0.000000188,0.00000328,-0.057190864,0.95443,loss,ns,0.00000416,0.00000558,0.745195832,0.456717945,pos,ns,-0.000926967,0.001634041,-0.567285102,0.570931058,neg,ns,0.243416331,-0.0000585,0.0000562,-1.041602771,0.298407522,neg,ns,0.94463536,Nhsl2,Nhsl2_Exon,X,102073354,102073403,102073402,102073403,50,+,GAATATGAGGAACAGTACTCGGAGGCCAGACTTGTGGGGCAGACCTTCCG,"Exon (Nhsl2-201/Nhsl2, exon 3 of 8)",20,101849385,102076276,226892,1,Nhsl2-202,223969,Nhsl2-202;Nhsl2-201;Nhsl2-207;Nhsl2-206;Nhsl2-205;Nhsl2-204;Rtl5-201;Rtl5-202;Rtl5-204,Nhsl2;Nhsl2;Nhsl2;Nhsl2;Nhsl2;Nhsl2;Rtl5;Rtl5;Rtl5,0;0;0;0;0;0;-2158;-2050;-2050,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,7,100042480,ENSMUSG00000079481,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6782,cg02886027,-0.000000306,0.00000181,-0.169167614,0.865775133,loss,ns,0.00000229,0.00000307,0.745087569,0.456783291,pos,ns,0.005053947,0.000900484,5.612475244,4.43E-08,pos,ns,7.353786094,-0.000143328,0.000031,-4.628330378,0.00000543,neg,ns,0.960222641,Azin1,Azin1_threeUTR,15,38497514,38497563,38497514,38497515,50,+,CGACGGATGAATCAAGTGAACCTAATGAAAAACAATCCTGTATAGAGAAA,3' UTR,15,38487427,38519266,31840,2,Azin1-201,21703,Azin1-201;Azin1-203;Azin1-205;Azin1-209;Azin1-206;Azin1-202;Azin1-207;Azin1-204,Azin1;Azin1;Azin1;Azin1;Azin1;Azin1;Azin1;Azin1,0;0;0;0;-126;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,9,54375,ENSMUSG00000037458,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21927,cg09213165,-0.00000725,0.00000304,-2.379787946,0.017927203,loss,ns,0.00000385,0.00000517,0.744964083,0.456857833,pos,ns,0.000487034,0.001515262,0.32141866,0.748109746,pos,ns,0.126034687,-0.0000959,0.0000521,-1.840979791,0.066579976,neg,ns,0.959700198,Gm9661,Gm9661_Exon,12,109738472,109738521,109738472,109738473,50,-,CGAATCATACACGGTTGACCTATTTTTCAGTACCAAATCCCGCCTTGGAG,"Exon (Mir154-201/Mir154-201, exon 1 of 1)",12,109827003,109828124,1122,1,Gm9661-201,-88531,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,8,675987,NA,mapped to different genes,12,109738421,109738552,132,*,132,9,0.492424242,1.157894737,0.068181818,0.00000904,CpGisland,TRUE,NA,NRS
6010,cg05646405,0.000130099,0.0000177,7.331388898,2.00E-12,gain,yes,-0.0000225,0.0000301,-0.744901667,0.456895512,neg,ns,0.05017748,0.00883209,5.681269179,3.08E-08,pos,ns,7.511270566,-0.001043822,0.000303735,-3.436623745,0.000669401,neg,ns,0.323670707,Cxxc5,Cxxc5_Intron,18,35849656,35849705,35849656,35849657,50,-,CGCCCAGCTGTGGCATCTGTCAAGGTCAGATAGCGACTCCGGAACCAGCC,"Intron (Gm50371-201/Gm50371-201, intron 4 of 4)",18,35829397,35859002,29606,1,Cxxc5-202,20259,Cxxc5-202;Cxxc5-201;Cxxc5-206;Cxxc5-203;Cxxc5-204,Cxxc5;Cxxc5;Cxxc5;Cxxc5;Cxxc5,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,49,67393,ENSMUSG00000046668,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
14835,cg26078513,0.0000316,0.0000107,2.965632481,0.003255245,gain,ns,-0.0000135,0.0000181,-0.744887783,0.456903894,neg,ns,0.003061765,0.005307905,0.576831131,0.564472162,pos,ns,0.248357472,0.0000568,0.000182538,0.311357409,0.755738205,pos,ns,0.309823559,Sez6,Sez6_Exon,11,77914588,77914637,77914636,77914637,50,+,TTGTAATAACAACAATTAACCAGTAAATAATGTCCTTTAAACTGCAAACG,"Exon (Gm11190-201/Gm11190-201, exon 3 of 3)",11,77930800,77979048,48249,1,Sez6-202,-16163,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,9,20370,ENSMUSG00000000632,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
21487,cg11261637,0.00000653,0.00000506,1.292501184,0.197146189,gain,ns,0.0000064,0.00000859,0.744747439,0.456988625,pos,ns,0.000687367,0.002516291,0.273166851,0.784906851,pos,ns,0.10518188,0.000121331,0.0000865,1.402106014,0.161884119,pos,ns,0.815683737,Bcl11b,Bcl11b_Intron,12,107952362,107952411,107952410,107952411,50,-,GCAAGCTTGCTTATTTTCTCCATGGGGCGCAACAGTGCCTATGTGTGCCG,"Intron (Bcl11b-201/Bcl11b, intron 3 of 3)",12,107910403,108003602,93200,2,Bcl11b-201,51191,Bcl11b-201;Bcl11b-202;Bcl11b-203,Bcl11b;Bcl11b;Bcl11b,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,39,58208,ENSMUSG00000048251,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16508,cg01068369,-0.00000149,0.00000166,-0.901288296,0.368134735,loss,ns,0.0000021,0.00000282,0.744718125,0.457006323,pos,ns,0.001517079,0.000825311,1.838189733,0.066991113,pos,ns,1.173982809,-0.0000603,0.0000284,-2.1247376,0.034399458,neg,ns,0.958192403,Sfxn5,Sfxn5_Intron,6,85241494,85241543,85241494,85241495,50,-,CGTCTGCCAGATACCAGGCAATGCAATTAAAGACAGTAGAAATTGCCAAA,"Intron (Sfxn5-201/Sfxn5, intron 10 of 13)",6,85213049,85333422,120374,2,Sfxn5-201,91879,Sfxn5-201;Sfxn5-205;Sfxn5-202,Sfxn5;Sfxn5;Sfxn5,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,9,94282,ENSMUSG00000033720,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12037,cg14315406,0.00000157,0.00000383,0.411422319,0.681047182,gain,ns,-0.00000484,0.0000065,-0.744628297,0.457060561,neg,ns,-0.001544277,0.00190473,-0.810759058,0.418126041,neg,ns,0.378692784,0.000104468,0.0000655,1.594852779,0.111764126,pos,ns,0.917516426,Fap,Fap_Exon,2,62502812,62502861,62502812,62502813,50,-,CGTGGATGAGAAGATAGTCTACATTTCTGAAATATTCTGCTCTTGCCATC,"Exon (Fap-202/Fap, exon 24 of 26)",2,62500943,62574075,73133,2,Fap-202,71214,Fap-202;Fap-205;Fap-203;Fap-201;Fap-208;Fap-209,Fap;Fap;Fap;Fap;Fap;Fap,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,8,14089,ENSMUSG00000000392,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19433,cg22117133,0.00000548,0.00000256,2.137985597,0.033299656,gain,ns,-0.00000324,0.00000435,-0.744442723,0.457172623,neg,ns,-0.003084704,0.001274716,-2.419914632,0.016099006,neg,ns,1.793200951,0.0000688,0.0000438,1.569960121,0.117444492,pos,ns,0.886933938,Prpf40b,Prpf40b_Exon,15,99305173,99305222,99305173,99305174,50,+,CGGGTGCGGACACCGCCAGCTGTGAGTCTTCTGGGGGCCTGCTCCCCCCA,"Exon (Prpf40b-205/Prpf40b, exon 5 of 8)",15,99295087,99305965,10879,1,Prpf40b-205,10086,Prpf40b-205;Prpf40b-214;Prpf40b-206;Prpf40b-209;Prpf40b-211;Prpf40b-212;Prpf40b-208;Prpf40b-201;Prpf40b-202;Prpf40b-210;Prpf40b-215,Prpf40b;Prpf40b;Prpf40b;Prpf40b;Prpf40b;Prpf40b;Prpf40b;Prpf40b;Prpf40b;Prpf40b;Prpf40b,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,10,54614,ENSMUSG00000023007,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19949,cg00450891,0.000263245,0.0000272,9.673902139,1.62E-19,gain,yes,0.0000344,0.0000462,0.744435516,0.457176975,pos,ns,0.080458196,0.01354363,5.940667037,7.62E-09,pos,ns,8.11805954,-0.000198814,0.000465764,-0.426855196,0.669781094,neg,ns,0.840770965,Clpb,Clpb_Intron,7,101742001,101742050,101742001,101742002,50,-,CGCCTATCTCTGCTGCCCCAAACCAGTAATTAAAATCCTGTGAGACTGGG,"Intron (Clpb-201/Clpb, intron 5 of 15)",7,101663633,101790168,126536,1,Clpb-201,78368,Clpb-201;Clpb-202;Clpb-211;Clpb-208;Clpb-207;Clpb-210,Clpb;Clpb;Clpb;Clpb;Clpb;Clpb,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,21,21,20480,ENSMUSG00000001829,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13090,cg03524794,-0.0000388,0.00000606,-6.3996771,5.75E-10,loss,yes,-0.00000767,0.0000103,-0.744366101,0.457218896,neg,ns,0.0237596,0.003017345,7.874339561,5.81E-14,pos,yes,13.23577104,-0.000755288,0.000103766,-7.278739827,2.79E-12,neg,yes,0.902966626,Kdm6b,Kdm6b_Exon,11,69406365,69406414,69406413,69406414,50,-,TAAGGCACGCAGGCGGTGGTTGCTGCTGGTGAAACGCTGGAGTCCATCCG,"Exon (Kdm6b-201/Kdm6b, exon 10 of 23)",11,69398508,69413675,15168,2,Kdm6b-201,7261,Kdm6b-201;Kdm6b-202,Kdm6b;Kdm6b,0;-2150,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,8,216850,ENSMUSG00000018476,conserved gene and region,11,69406336,69406459,124,*,124,10,0.661290323,0.766852195,0.080645161,0.000000493,CpGisland,TRUE,U10,Tr-S
23822,cg20375576,0.00000785,0.00000207,3.786847462,0.000183208,gain,ns,0.00000262,0.00000352,0.744292666,0.457263248,pos,ns,0.007285249,0.001032285,7.057403288,1.12E-11,pos,yes,10.95268846,-0.000167447,0.0000355,-4.716790893,0.00000363,neg,ns,0.064388984,Galnt2l,Galnt2l_Intron,8,120487271,120487320,120487271,120487272,50,-,CGTTACTATGGTGCAGCCGGGGCTTGCAGAATCCCAGTAATAGCATTTAT,"Intron (Galnt2l-201/Galnt2l, intron 1 of 15)",8,119910841,124345722,4434882,1,Galnt2l-201,576430,Galnt2l-201;Gse1-206;Gse1-201,Galnt2l;Gse1;Gse1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,28,,NA,mapped to different genes,8,120487183,120487289,107,*,107,11,0.607476636,1.127394636,0.102803738,7.87E-09,CpGisland,TRUE,U1,Pr-A
20746,cg00402434,0.00000626,0.0000019,3.302392544,0.001070705,gain,ns,0.0000024,0.00000322,0.744276456,0.457273038,pos,ns,0.001096341,0.000943676,1.161777172,0.246219692,pos,ns,0.608677217,0.0000435,0.0000325,1.339713249,0.181319848,pos,ns,0.054261487,Shisal2b,Shisal2b_Exon,13,104863524,104863573,104863572,104863573,50,-,TGAGGCTCCACATGTAGCTGTGCTTGTAGGGGAAGTAGCTGCCCGGCTCG,Promoter (<=1kb),13,104845283,104863893,18611,2,Shisal2b-201,320,Shisal2b-201;Shisal2b-202;Shisal2b-203,Shisal2b;Shisal2b;Shisal2b,0;-212;-105,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,77803,ENSMUSG00000042655,conserved gene and region,13,104863567,104863806,240,*,240,26,0.6875,0.917107584,0.108333333,4.51E-21,CpGisland,TRUE,NA,NRS
20278,cg16083580,0.0000446,0.00000438,10.17489075,3.59E-21,gain,yes,-0.00000554,0.00000744,-0.744270315,0.457276747,neg,ns,0.004271446,0.002180711,1.958739952,0.051039535,pos,ns,1.292093289,-0.0000365,0.000075,-0.486794181,0.626748188,neg,ns,0.144711991,Hoxc5,Hoxc5_Exon,15,102982150,102982199,102982150,102982151,50,+,CGGCAGCAAGCACAAAGAGGAGAAGGCCGACCTGGACCCCAGTAAGTTGG,"Exon (Hoxc9-201/Hoxc9, exon 2 of 3)",15,102967443,103015676,48234,1,Hoxc5-202,14707,Hoxc5-202;Hoxc9-202;Hoxc9-201,Hoxc5;Hoxc9;Hoxc9,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,72,134,15424,ENSMUSG00000022485,conserved gene and region,15,102981651,102982178,528,*,528,70,0.696969697,1.109010712,0.132575758,6.92E-63,CpGisland,TRUE,U3,Pr-B
23296,cg22988741,0.00000968,0.00000494,1.959649795,0.050932508,gain,ns,-0.00000624,0.00000839,-0.744257076,0.457284743,neg,ns,0.002638998,0.002458203,1.0735476,0.283860433,pos,ns,0.546895139,-0.0000361,0.0000845,-0.427050038,0.669639328,neg,ns,0.873454592,Eri3,Eri3_Intron,4,117658081,117658130,117658081,117658082,50,-,CGTTGTAATTGTGAACAAGCTGTAATGTTTAATTAGTCTGTAAATGAAAC,"Intron (Eri3-201/Eri3, intron 8 of 8)",4,117550365,117674297,123933,1,Eri3-201,107716,Eri3-201;Eri3-206;Eri3-203,Eri3;Eri3;Eri3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,82,97,140546,ENSMUSG00000033423,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9975,cg03231903,-0.0000466,0.00000891,-5.224728223,0.000000321,loss,yes,-0.0000113,0.0000151,-0.744179916,0.457331348,neg,ns,-0.012824568,0.004434389,-2.892070865,0.004097811,neg,ns,2.387448113,-0.000054,0.000152498,-0.353774798,0.723748146,neg,ns,0.794082662,Hectd1,Hectd1_Exon,12,51768923,51768972,51768923,51768924,50,-,CGTTTCCGCTGTTAAGGTGCTGGTGCTTGCACTGGAAGATGACCCTACTT,"Exon (Hectd1-201/Hectd1, exon 25 of 43)",12,51743722,51829536,85815,2,Hectd1-201,60564,Hectd1-201;Hectd1-202;Hectd1-204,Hectd1;Hectd1;Hectd1,0;0;-3692,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,19,19,207304,ENSMUSG00000035247,mapped to different genes,12,51768692,51768930,239,*,239,12,0.518828452,0.758730159,0.050209205,0.00000369,CpGisland,TRUE,U10,Tr-S
10963,cg04914412,-0.00000361,0.00000378,-0.95378929,0.34093343,loss,ns,0.00000478,0.00000642,0.743878616,0.45751336,pos,ns,0.002440771,0.001881539,1.29722062,0.195519866,pos,ns,0.70880911,-0.0000959,0.0000647,-1.482068078,0.139337969,neg,ns,0.888262523,Tcf7l2,Tcf7l2_Exon,19,55926004,55926053,55926004,55926005,50,+,CGCGCTTTGGCCTTGATCAACAGAATAACTGGTGCGGCCCTTGCAGGTGT,"Exon (Tcf7l2-213/Tcf7l2, exon 12 of 14)",19,55741820,55933229,191410,1,Tcf7l2-213,184184,Tcf7l2-213;Tcf7l2-201;Tcf7l2-208;Tcf7l2-211;Tcf7l2-212;Tcf7l2-222;Tcf7l2-215;Tcf7l2-207;Tcf7l2-202;Tcf7l2-209;Tcf7l2-210;Tcf7l2-203,Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,88,21416,ENSMUSG00000024985,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8793,cg09312886,-0.00000294,0.00000261,-1.128105871,0.26014753,loss,ns,0.0000033,0.00000443,0.743667307,0.457641034,pos,ns,0.001290603,0.001299258,0.993338697,0.321319637,pos,ns,0.493062733,-0.0000624,0.0000447,-1.397225161,0.163345122,neg,ns,0.962455287,Oga,Oga_Intron,19,45761919,45761968,45761967,45761968,50,-,AATGCTGTGCGACCTGCAAAGAAACAATGTGAAGTGTATACCTAGAGCCG,"Intron (Oga-201/Oga, intron 11 of 15)",19,45750259,45783551,33293,2,Oga-201,21583,Oga-201;Oga-204;Oga-203;Oga-206,Oga;Oga;Oga;Oga,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,21,76055,ENSMUSG00000025220,conserved gene but different region,19,45761874,45761986,113,*,113,12,0.575221239,1.308880309,0.10619469,8.79E-10,CpGisland,TRUE,U10,Tr-S
18235,cg13571262,-0.000000774,0.00000117,-0.661992181,0.508468028,loss,ns,-0.00000148,0.00000199,-0.74365146,0.45765061,neg,ns,-0.000771542,0.000582217,-1.32517908,0.186087634,neg,ns,0.730282486,0.0000321,0.00002,1.6017927,0.110219921,pos,ns,0.970305863,Ap3b1,Ap3b1_Intergenic_downstream,13,94573968,94574017,94573968,94573969,50,+,CGGCTGTGGCTGGTCATAAATAAATCCTCTTATATAGTTGTTATGAACAC,Distal Intergenic,13,94542303,94547867,5565,1,Ap3b1-202,31665,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,33,55,11774,ENSMUSG00000021686,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19058,cg05940851,0.0000019,0.00000193,0.984921012,0.325430951,gain,ns,-0.00000244,0.00000328,-0.743549372,0.4577123,neg,ns,-0.001529801,0.000959723,-1.594003582,0.111954253,neg,ns,0.950959405,0.0000302,0.000033,0.914825901,0.360994058,pos,ns,0.036875207,Cdk12,Cdk12_Intergenic_downstream,11,98294788,98294837,98294788,98294789,50,-,CGCAGTGCGTGGCAGGCTGCGGCTTCATTATCCTGATTGATTCCTCCTGC,Distal Intergenic,11,98263502,98268011,4510,1,Cdk12-204,31335,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,25,69131,ENSMUSG00000003119,mapped to different genes,11,98294537,98294796,260,*,260,37,0.75,1.01327154,0.142307692,8.94E-35,CpGisland,TRUE,U3,Pr-B
16201,cg23215506,-0.0000254,0.00000768,-3.307462564,0.001052165,loss,ns,0.0000097,0.000013,0.743526748,0.457725972,pos,ns,0.000000974,0.003820657,0.000254901,0.999796782,pos,ns,0.0000883,-0.000195159,0.000131392,-1.485314513,0.138476709,neg,ns,0.869852222,Bnc2,Bnc2_Intron,4,84586446,84586495,84586494,84586495,50,+,TGTGTGTCAGAATGTCTCTCCTTAATGAACCTGTTTGCAATAAGACTCCG,"Intron (Bnc2-201/Bnc2, intron 1 of 7)",4,84275095,84675034,399940,2,Bnc2-201,88539,Bnc2-201;Bnc2-202;Bnc2-214;Bnc2-215;Bnc2-206;Bnc2-211;Bnc2-217;Bnc2-207;Bnc2-203;Bnc2-209;Bnc2-204;Bnc2-210,Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,91,242509,ENSMUSG00000028487,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17399,cg21180487,-0.0000302,0.00000783,-3.855826662,0.000140266,loss,ns,-0.00000989,0.0000133,-0.743481463,0.457753339,neg,ns,-0.006084085,0.003897315,-1.561096602,0.119521218,neg,ns,0.92255499,-0.0000292,0.000134028,-0.21795329,0.827608903,neg,ns,0.912686944,Tpm3,Tpm3_Exon,3,90089068,90089117,90089116,90089117,50,+,AGGAGCTGAAGAATGTCACCAACAACCTCAAGTCTCTTGAGGCTCAGGCG,"Exon (Tpm3-205/Tpm3, exon 6 of 10)",3,90072649,90092130,19482,1,Tpm3-205,16419,Tpm3-205;Tpm3-204;Tpm3-201;Tpm3-202;Tpm3-212;Tpm3-207;Tpm3-203;Tpm3-214;Tpm3-206;Tpm3-213;Tpm3-208;Tpm3-216;Tpm3-209;Tpm3-215;Tpm3-211;Tpm3-210,Tpm3;Tpm3;Tpm3;Tpm3;Tpm3;Tpm3;Tpm3;Tpm3;Tpm3;Tpm3;Tpm3;Tpm3;Tpm3;Tpm3;Tpm3;Tpm3,0;0;0;0;9403;0;0;0;8626;2697;0;1629;1612;0;-514;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,6,59069,ENSMUSG00000027940,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15458,cg04411283,0.0000609,0.0000117,5.19281042,0.000000376,gain,yes,-0.0000148,0.0000199,-0.74347519,0.45775713,neg,ns,0.019758069,0.00583591,3.385601893,0.000801659,pos,ns,3.096010469,-0.000584083,0.000200696,-2.910282027,0.003872473,neg,ns,0.354901885,Srsf5,Srsf5_Exon,12,80948419,80948468,80948419,80948420,50,-,CGAAATTAGGTGGTCGTTGGAATCCTGATCGCAGTAAAGTGGTCCTTGGT,"Exon (Srsf5-207/Srsf5, exon 5 of 7)",12,80945504,80950507,5004,1,Srsf5-201,2915,Slc10a1-202;Slc10a1-201;Srsf5-201;Srsf5-204;Srsf5-207;Srsf5-202;Srsf5-203;Srsf5-212;Srsf5-211;Srsf5-206;Srsf5-208;Srsf5-210;Srsf5-205;Srsf5-209,Slc10a1;Slc10a1;Srsf5;Srsf5;Srsf5;Srsf5;Srsf5;Srsf5;Srsf5;Srsf5;Srsf5;Srsf5;Srsf5;Srsf5,20237;19611;0;0;0;0;0;0;2885;0;2849;2840;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,10,20384,ENSMUSG00000021134,conserved gene but different region,12,80948271,80948449,179,*,179,13,0.480446927,1.283507998,0.072625698,1.77E-08,CpGisland,TRUE,NA,NRS
2701,cg24171392,-0.00000172,0.000000828,-2.074285667,0.038877863,loss,ns,-0.00000105,0.00000141,-0.743452681,0.457770733,neg,ns,-0.000114814,0.000412025,-0.278657922,0.780693146,neg,ns,0.107519633,-0.0000354,0.0000142,-2.497076635,0.013040719,neg,ns,0.017646169,Ywhaq,Ywhaq_Exon,12,21417775,21417824,21417823,21417824,50,-,GCGGCTTCGGCCACGGGGTTTCCTCCAATTAGATCCAGGGTAAAAGGACG,Promoter (<=1kb),12,21390071,21417637,27567,2,Ywhaq-202,-187,Ywhaq-202;Ywhaq-201;Ywhaq-205;Ywhaq-203,Ywhaq;Ywhaq;Ywhaq;Ywhaq,-138;-339;-187;-645,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,22630,ENSMUSG00000076432,conserved gene but different region,12,21416728,21417993,1266,*,1266,131,0.67535545,0.91097147,0.103475513,3.61E-101,CpGisland,TRUE,NA,NRS
5836,cg11160926,-0.000124748,0.0000175,-7.125338561,7.31E-12,loss,yes,0.0000221,0.0000297,0.743452583,0.457770792,pos,ns,0.052515439,0.008713758,6.02672697,4.74E-09,pos,ns,8.3238383,-0.002509323,0.000299665,-8.373748733,1.95E-15,neg,yes,0.746089692,Msantd1,Msantd1_Exon,5,34921380,34921429,34921428,34921429,50,-,TGGCTCTTGTGTCTCTCGTTTCAGGAAATTAAAATGCATGACAGATAGCG,"Exon (Msantd1-204/Msantd1, exon 3 of 4)",5,34915088,34923564,8477,1,Msantd1-204,6292,Msantd1-202;Msantd1-204;Msantd1-201;Msantd1-203,Msantd1;Msantd1;Msantd1;Msantd1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,4,403174,ENSMUSG00000051246,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5004,cg06429865,-0.000000478,0.00000114,-0.419460385,0.675170229,loss,ns,-0.00000144,0.00000194,-0.743410855,0.457796011,neg,ns,-0.0000726,0.00056691,-0.127979171,0.898248438,neg,ns,0.046603529,-0.0000313,0.0000195,-1.605422452,0.109419037,neg,ns,0.970956309,Ammecr1l,Ammecr1l_Intron,18,31774753,31774802,31774801,31774802,50,+,TGAGAACAGCCGCATTTGGAACTCTGCATCTCTCGTTGCATTTGGGTTCG,"Intron (Ammecr1l-205/Ammecr1l, intron 5 of 5)",18,31759826,31777524,17699,1,Ammecr1l-205,14927,Ammecr1l-205;Ammecr1l-201;Ammecr1l-204;Ammecr1l-203;Ammecr1l-202,Ammecr1l;Ammecr1l;Ammecr1l;Ammecr1l;Ammecr1l,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,4,225339,ENSMUSG00000041915,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19023,cg05059566,-0.000000163,0.00000231,-0.070852073,0.943561174,loss,ns,-0.00000291,0.00000392,-0.74331563,0.457853564,neg,ns,0.004699537,0.001147843,4.094235011,0.0000541,pos,ns,4.2668765,-0.0000702,0.0000395,-1.77826393,0.076340579,neg,ns,0.050029229,Prdm8,Prdm8_Intron,5,98180815,98180864,98180863,98180864,50,-,ACGCGTCATTGGGCAGATTATGTGCAGCAAACAAAAAGTGTGTGTCTGCG,"Intron (Prdm8-202/Prdm8, intron 1 of 4)",5,98167198,98187454,20257,1,Prdm8-202,13617,Prdm8-202;Prdm8-201,Prdm8;Prdm8,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,10,77630,ENSMUSG00000035456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
14354,cg21118939,-0.0000331,0.0000125,-2.648887899,0.008489371,loss,ns,0.0000158,0.0000212,0.74330725,0.457858629,pos,ns,-0.00067403,0.006213242,-0.108482859,0.913682859,neg,ns,0.039204522,0.000110092,0.000213673,0.51523432,0.606756494,pos,ns,0.658353275,Gm18494,Gm18494_Intron,2,75314944,75314993,75314992,75314993,50,-,TTATGGGCATCACAAAACGAATCCACTGTGCATTTTTTCTTTATGTGACG,"Intron (2600014E21Rik-201/2600014E21Rik-201, intron 5 of 5)",2,75302072,75303225,1154,2,Gm18494-201,-11768,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,6,100417269,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1144,cg16452780,-0.0000578,0.00000902,-6.414148279,5.28E-10,loss,yes,0.0000114,0.0000153,0.74327926,0.457875546,pos,ns,0.024543879,0.004487608,5.469256023,9.32E-08,pos,ns,7.030624956,-0.000811071,0.000154328,-5.255486214,0.000000275,neg,yes,0.593220808,Rpl23a-ps13,Rpl23a-ps13_Intergenic_upstream,X,11800780,11800829,11800828,11800829,50,-,TGTTTGCCGGGGACAGCCAAGGATTCCCGTGCCAGCTGGGCTCCCACACG,Distal Intergenic,20,11867265,11867705,441,1,Rpl23a-ps13-201,-66485,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,13,14,628338,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11452,cg25187268,-0.0000239,0.00000432,-5.544218303,6.32E-08,loss,yes,-0.00000545,0.00000733,-0.743256452,0.457889332,neg,ns,-0.002063556,0.002147908,-0.960728074,0.337437651,neg,ns,0.471806461,-0.00000835,0.0000739,-0.113097786,0.910026234,neg,ns,0.899817587,Hnrnpk,Hnrnpk_Exon,13,58396132,58396181,58396132,58396133,50,+,CGATCCTATGGGCCAGGCTCCATACTTCAGTGGGGTTCAATGGCACTATG,"Exon (Hnrnpk-220/Hnrnpk, exon 7 of 7)",13,58391142,58403343,12202,2,Hnrnpk-202,7162,Hnrnpk-202;Hnrnpk-224;Hnrnpk-221;Hnrnpk-232;Hnrnpk-216;Hnrnpk-201;Hnrnpk-205;Hnrnpk-217;Hnrnpk-206;Hnrnpk-209;Hnrnpk-213;Hnrnpk-227;Hnrnpk-234;Hnrnpk-233;Hnrnpk-228;Hnrnpk-214;Hnrnpk-215;Hnrnpk-211;Hnrnpk-208;Hnrnpk-212;Hnrnpk-231;Hnrnpk-230;Hnrnpk-203;Hnrnpk-218;Hnrnpk-226;Hnrnpk-207;Hnrnpk-219;Hnrnpk-225;Hnrnpk-229;Hnrnpk-223;Hnrnpk-220;Hnrnpk-210;Hnrnpk-204;Hnrnpk-222,Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk,0;0;0;0;0;0;0;-2264;-1347;-2157;-934;-2048;-2243;-1962;-1436;0;-412;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;6321;5874,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,19,15387,ENSMUSG00000021546,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9437,cg14292527,0.00000122,0.00000337,0.36050334,0.718716273,gain,ns,0.00000426,0.00000573,0.743223956,0.457908975,pos,ns,0.002629414,0.001678766,1.566277701,0.118303802,pos,ns,0.927001297,-0.0000656,0.0000577,-1.135433726,0.257070724,neg,ns,0.919545407,Gm48909,Gm48909_Intron,14,48738277,48738326,48738277,48738278,50,-,CGCCAGGCCTAATCCCTACACAGTGGAACAAAGCCCAGCAAAGCCTTTGA,"Intron (Otx2os1-206/Otx2os1-206, intron 2 of 4)",14,48695601,48695981,381,2,Gm48909-201,-42345,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,8,105245868,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7772,cg22496127,-0.0000104,0.0000043,-2.424896643,0.015883924,loss,ns,-0.00000542,0.0000073,-0.743110945,0.457977287,neg,ns,-0.005628248,0.002138627,-2.631711273,0.008920618,neg,ns,2.04960507,0.000203892,0.0000735,2.772262541,0.005903555,pos,ns,0.900721514,Arhgap15,Arhgap15_threeUTR,2,44243109,44243158,44243157,44243158,50,+,GAAGCTGAATTTGGACGACAGCCAGTGGGAGGACATCCACGTTGTCACCG,3' UTR,2,43748824,44395953,647130,1,Arhgap15-203,494285,Arhgap15-203;Arhgap15-202;Arhgap15-201,Arhgap15;Arhgap15;Arhgap15,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,78,76117,ENSMUSG00000049744,conserved gene and region,2,44243148,44243342,195,*,195,12,0.487179487,1.042780749,0.061538462,0.000000447,CpGisland,TRUE,U15,NS
955,cg01208948,-0.0000118,0.00000912,-1.298593502,0.19504863,loss,ns,0.0000115,0.0000155,0.743094614,0.457987159,pos,ns,-0.00514639,0.004536986,-1.134319078,0.257537097,neg,ns,0.589160204,-0.0000193,0.000156027,-0.123431446,0.901845445,neg,ns,0.554801553,Gm5182,Gm5182_Intergenic_upstream,12,10035572,10035621,10035620,10035621,50,+,CTCTGGGCCACATCACCTTGCAGTTGCCCTCAAATTGTTTCTGAATCACG,Distal Intergenic,12,10152142,10158233,6092,1,Gm5182-201,-116521,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,4,382567,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17884,cg22815188,0.0000125,0.00000733,1.708675821,0.088511933,gain,ns,-0.00000925,0.0000125,-0.743079717,0.457996165,neg,ns,-0.004042793,0.003647981,-1.108227392,0.268622699,neg,ns,0.570857292,0.000100055,0.000125454,0.797541379,0.425747143,pos,ns,0.865565242,Irx5,Irx5_Promoter,8,92348422,92348471,92348422,92348423,50,-,CGTTTAGTCACTGGGGTTATTGACATATTTTAAAATAAAAGTATACCCTT,Promoter (9-10kb),8,92357625,92376286,18662,1,Irx5-202,-9203,NA,NA,NA,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,1,30,54352,ENSMUSG00000031737,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24941,cg07803121,0.0000139,0.00000803,1.731886848,0.084288463,gain,ns,-0.0000101,0.0000136,-0.743067948,0.458003279,neg,ns,0.00038191,0.003997293,0.09554227,0.923945848,pos,ns,0.034353482,0.0000429,0.000137467,0.312109023,0.755167492,pos,ns,0.830680654,Adgrb2,Adgrb2_Exon,4,130014988,130015037,130014988,130014989,50,+,CGGTCCCCAGCCCCCTGCTCAGCTCAGCCTCGGCCAGGAACGCCATGTTA,"Exon (Adgrb2-208/Adgrb2, exon 22 of 29)",4,129984870,130022633,37764,1,Adgrb2-207,30118,Adgrb2-207;Adgrb2-205;Adgrb2-208;Adgrb2-204;Adgrb2-201;Adgrb2-202;Adgrb2-206;Adgrb2-211;Adgrb2-203;Adgrb2-213;Adgrb2-209;Adgrb2-212,Adgrb2;Adgrb2;Adgrb2;Adgrb2;Adgrb2;Adgrb2;Adgrb2;Adgrb2;Adgrb2;Adgrb2;Adgrb2;Adgrb2,0;0;0;0;0;0;0;5112;4919;2787;1352;-3739,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,8,230775,ENSMUSG00000028782,conserved gene and region,4,130014860,130015101,242,*,242,13,0.698347107,0.441358025,0.053719008,0.000000597,CpGisland,TRUE,NA,NRS
13047,cg25359492,-0.000000757,0.000000455,-1.663814836,0.097159933,loss,ns,-0.000000574,0.000000773,-0.743064558,0.458005329,neg,ns,-0.000498841,0.000226421,-2.203158932,0.028318884,neg,ns,1.547923859,0.0000117,0.00000779,1.501202312,0.134321082,pos,ns,0.989973532,Chd3,Chd3_Exon,11,69345500,69345549,69345548,69345549,50,+,TGGCCAGCCGGCTGAGGATGCTGCGCTCGGACATCTGAAGGCGGGCTGCG,Promoter (<=1kb),11,69343273,69346019,2747,2,Chd3-205,470,Chd3-205;Chd3-203;Chd3-202;Chd3-211;Chd3-201;Chd3-204;Chd3-208;Rnf227-201;Rnf227-203;Rnf227-202,Chd3;Chd3;Chd3;Chd3;Chd3;Chd3;Chd3;Rnf227;Rnf227;Rnf227,0;0;0;0;0;0;0;5039;4729;4691,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,22,26,216848,ENSMUSG00000018474,conserved gene but different region,11,69345353,69345644,292,*,292,17,0.609589041,0.656613757,0.058219178,1.94E-09,CpGisland,TRUE,U10,Tr-S
3328,cg26510513,-0.00000831,0.00000355,-2.340976167,0.019866906,loss,ns,0.00000448,0.00000603,0.742985545,0.458053095,pos,ns,0.000481363,0.001766399,0.272510701,0.785410791,pos,ns,0.104903136,-0.00000185,0.0000607,-0.030408583,0.975760767,neg,ns,0.920328499,Gm11890,Gm11890_Intergenic_downstream,4,23605843,23605892,23605843,23605844,50,-,CGCAGGCTGATAAGCTCTGAACAGCTCAGAATGCTGTTTGCCCACATACT,Distal Intergenic,4,23659928,23660344,417,2,Gm11890-201,54501,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,32,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8246,cg09555176,-0.000057,0.0000107,-5.345667313,0.000000175,loss,yes,0.0000135,0.0000181,0.742904392,0.458102158,pos,ns,-0.013224136,0.005305616,-2.492478745,0.013207335,neg,ns,1.879184808,0.000181152,0.00018246,0.992830652,0.321566802,pos,ns,0.762592505,Slf2,Slf2_Intergenic_upstream,19,44900469,44900518,44900517,44900518,50,-,GATTTCTCAGGCAATTTGGCCAGTGATGCATGGGGCAGTAGATCCTCGCG,Distal Intergenic,19,44931151,44983188,52038,1,Slf2-201,-30682,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,15,17,226151,ENSMUSG00000036097,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
4764,cg02304325,-0.000000602,0.00000204,-0.294388398,0.768658159,loss,ns,0.00000258,0.00000347,0.742537922,0.458323755,pos,ns,0.00096279,0.001017399,0.94632467,0.344720053,pos,ns,0.462533452,-0.0000187,0.000035,-0.533312976,0.594199087,neg,ns,0.063469743,Ier5l,Ier5l_fiveUTR,2,30473969,30474018,30474017,30474018,50,-,GGGAGATGCTGATCAGGCTCTGGGCGTCCAGGGCGCACTCCATGCTCCCG,Promoter (<=1kb),2,30471537,30474219,2683,2,Ier5l-201,201,Ier5l-201,Ier5l,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,13,72500,ENSMUSG00000089762,conserved gene and region,2,30473689,30474742,1054,*,1054,111,0.680265655,0.91031746,0.105313093,9.07E-87,CpGisland,TRUE,U3,Pr-B
3711,cg12684650,-0.00000813,0.0000022,-3.699492115,0.000255514,loss,ns,0.00000277,0.00000373,0.742349539,0.458437689,pos,ns,0.00140367,0.001093378,1.283792184,0.200173406,pos,ns,0.698593622,-0.0000768,0.0000376,-2.041622393,0.042035291,neg,ns,0.963040402,Adgrb3,Adgrb3_Exon,1,25112197,25112246,25112245,25112246,50,-,GGCTGACAAAGCTGTTGTTGAAACTACTCCACACTTGGCACATTTGAGCG,"Exon (Adgrb3-203/Adgrb3, exon 9 of 16)",1,25067476,25228826,161351,2,Adgrb3-203,116580,Adgrb3-203;Adgrb3-206;Adgrb3-205;Adgrb3-207;Adgrb3-201;Adgrb3-208;Adgrb3-202,Adgrb3;Adgrb3;Adgrb3;Adgrb3;Adgrb3;Adgrb3;Adgrb3,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,25,210933,ENSMUSG00000033569,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5629,cg12651588,-0.000000852,0.00000137,-0.6238551,0.533181533,loss,ns,-0.00000172,0.00000232,-0.742223912,0.458513678,neg,ns,0.000818239,0.000679875,1.203513094,0.229696068,pos,ns,0.638846439,-0.0000351,0.0000234,-1.500434852,0.134519566,neg,ns,0.958991851,Mapkap1,Mapkap1_Intron,2,34415970,34416019,34415970,34415971,50,+,CGGCATCCCTCTGCAAAGCCATAATTACCTAATTAGGTTGTTAATTAGGA,"Intron (Mapkap1-210/Mapkap1, intron 1 of 4)",2,34406771,34497716,90946,1,Mapkap1-210,9199,Gm13407-201;Mapkap1-210;Mapkap1-204;Mapkap1-208;Mapkap1-211;Mapkap1-202;Mapkap1-201;Mapkap1-209,Gm13407;Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1,-2623;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,59,227743,ENSMUSG00000038696,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7700,cg18335478,-0.00000441,0.00000233,-1.896128809,0.058872707,loss,ns,0.00000293,0.00000395,0.742178085,0.458541399,pos,ns,0.002018033,0.001158504,1.741930645,0.082512416,pos,ns,1.083480697,-0.0000331,0.0000398,-0.83126693,0.40646266,neg,ns,0.935396505,Arhgap15,Arhgap15_Intron,2,43786170,43786219,43786170,43786171,50,+,CGGCACAAAGCATGTTTAATGTTTTGTGTTGCTTCCTAGCTAATTATGTA,"Intron (Arhgap15-203/Arhgap15, intron 2 of 14)",2,43748824,44395953,647130,1,Arhgap15-203,37346,Arhgap15-203;Arhgap15-202;Arhgap15-205;Arhgap15-201,Arhgap15;Arhgap15;Arhgap15;Arhgap15,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,72,78,76117,ENSMUSG00000049744,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12015,cg06456512,-0.000000905,0.00000232,-0.390764434,0.696239772,loss,ns,0.00000292,0.00000394,0.742119434,0.458576879,pos,ns,0.002141612,0.001152901,1.857585026,0.064176053,pos,ns,1.192626999,-0.0000514,0.0000396,-1.296307689,0.195833689,neg,ns,0.080536016,Anp32a,Anp32a_Exon,9,62341534,62341583,62341534,62341535,50,-,CGGAACAGGACGCCCTCTGATGTGAGCATTTGCCAAAAATATCTCTGTCG,Promoter (<=1kb),9,62341293,62377701,36409,1,Anp32a-207,241,Anp32a-207;Anp32a-201;Anp32a-203;Anp32a-205;Anp32a-210;Anp32a-208;Anp32a-202,Anp32a;Anp32a;Anp32a;Anp32a;Anp32a;Anp32a;Anp32a,0;0;0;0;-881;-2480;-3216,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,9,11737,ENSMUSG00000032249,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
24983,cg20484843,-0.0000076,0.00000344,-2.20934924,0.027881204,loss,ns,-0.00000434,0.00000584,-0.741958977,0.458673953,neg,ns,0.000958348,0.001712087,0.559754507,0.576051121,pos,ns,0.239538974,-0.0000126,0.0000589,-0.214721743,0.83012545,neg,ns,0.933560539,Fgfr2,Fgfr2_threeUTR,7,130910955,130911004,130910955,130910956,50,-,CGAGGATTTTACGAGTCTCTTGCCAAGGTCAAGCCAGGGAACTTCAAGGT,3' UTR,7,130162451,133123350,2960900,2,Fgfr2-217,2212346,Fgfr2-217;Plekha1-203;Plekha1-202;Plekha1-211;Plekha1-201;Plekha1-206;Plekha1-208;Plekha1-204;Plekha1-205,Fgfr2;Plekha1;Plekha1;Plekha1;Plekha1;Plekha1;Plekha1;Plekha1;Plekha1,0;0;0;0;0;0;8710;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,TRUE,FALSE,threeUTR,9,79,14183,ENSMUSG00000030849,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19708,cg11792994,-0.0000169,0.0000159,-1.062960935,0.288626993,loss,ns,0.00002,0.000027,0.741790638,0.458775808,pos,ns,0.005093007,0.007895627,0.645041471,0.519377392,pos,ns,0.284516958,-0.000475987,0.00027153,-1.752982869,0.080593402,neg,ns,0.721561726,Stag1,Stag1_Exon,9,100776779,100776828,100776779,100776780,50,+,CGAAATATGCAGAATGCAGAAATCATCAGAAAAATGACTGAAGAATTTGA,"Exon (Stag1-206/Stag1, exon 6 of 34)",9,100643448,100796791,153344,1,Stag1-213,133331,Stag1-213;Stag1-206;Stag1-201;Stag1-208;Stag1-216;Stag1-203;Stag1-207,Stag1;Stag1;Stag1;Stag1;Stag1;Stag1;Stag1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,15,20842,ENSMUSG00000037286,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16030,cg09919410,-0.00000519,0.00000209,-2.487760239,0.013380285,loss,ns,-0.00000263,0.00000355,-0.741286111,0.459081153,neg,ns,-0.000867351,0.001038779,-0.834971908,0.404376541,neg,ns,0.393214046,0.0000422,0.0000357,1.18078383,0.238593766,pos,ns,0.939369601,Acaca,Acaca_Intron,11,84271968,84272017,84271968,84271969,50,+,CGCTCCTTTTGCGGAGTGATTGTAAGTAACGCTTGCCTTAAGAATCTCAT,"Intron (Acaca-202/Acaca, intron 25 of 55)",11,84173122,84401651,228530,1,Acaca-202,98846,Acaca-202;Acaca-201,Acaca;Acaca,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,28,28,107476,ENSMUSG00000020532,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24736,cg20162381,0.000065,0.0000155,4.195966636,0.0000355,gain,ns,-0.0000195,0.0000263,-0.741267822,0.459092224,neg,ns,0.002700988,0.007714854,0.35010234,0.726499643,pos,ns,0.138764595,0.00050555,0.000265313,1.905485299,0.057641985,pos,ns,0.27592751,Tspan9,Tspan9_Exon,6,128034442,128034491,128034490,128034491,50,-,CTTGCTGTCCAAAGATGGACTCCGATGGATCGAAGAATCCTCGCTACTCG,"Exon (Tspan9-204/Tspan9, exon 1 of 5)",6,127961396,128143563,182168,2,Tspan9-203,109072,Tspan9-203;Tspan9-202;Tspan9-201;Tspan9-204;Tspan9-211;Tspan9-209;Tspan9-208;Tspan9-207;Tspan9-206,Tspan9;Tspan9;Tspan9;Tspan9;Tspan9;Tspan9;Tspan9;Tspan9;Tspan9,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,8,109246,ENSMUSG00000030352,conserved gene and region,6,128034330,128034771,442,*,442,46,0.692307692,0.869148891,0.104072398,4.63E-36,CpGisland,TRUE,U3,Pr-B
11846,cg05638983,0.0000333,0.00000512,6.516792866,2.91E-10,gain,yes,0.00000644,0.00000869,0.741260587,0.459096603,pos,ns,0.007141505,0.002546624,2.804303403,0.005360752,pos,ns,2.27077427,-0.0000152,0.0000876,-0.173076513,0.862704237,neg,ns,0.877384958,Tle3,Tle3_Exon,9,61145065,61145114,61145113,61145114,50,+,TAATTGCCTGTTAGGTGATTAATAAGCTTACAGCAGATGCTAATGCGTCG,"Exon (I730028E13Rik-201/I730028E13Rik-201, exon 3 of 3)",9,61372366,61418497,46132,1,Tle3-218,-227252,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,30,21887,ENSMUSG00000032280,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8790,cg22723782,-0.00000192,0.00000106,-1.816993399,0.070183608,loss,ns,0.00000133,0.0000018,0.740998072,0.459255528,pos,ns,0.000082,0.000526977,0.15566371,0.876399416,pos,ns,0.057297921,-0.0000117,0.0000181,-0.647915028,0.517519481,neg,ns,0.969407154,Oga,Oga_Intron,19,45761570,45761619,45761618,45761619,50,+,TCTGAAGAGGGTTATCTGTCCAGGAGACGCTTTATCCCCAAAGCAATGCG,"Intron (Oga-201/Oga, intron 11 of 15)",19,45750259,45783551,33293,2,Oga-201,21932,Oga-201;Oga-204;Oga-203;Oga-206,Oga;Oga;Oga;Oga,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,21,76055,ENSMUSG00000025220,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
351,cg21028063,0.0000667,0.0000101,6.613379139,1.65E-10,gain,yes,0.0000127,0.0000171,0.740984692,0.45926363,pos,ns,0.012964223,0.005016479,2.584326897,0.010213998,pos,ns,1.99080424,-0.000508453,0.000172516,-2.947276586,0.003449171,neg,ns,0.139047935,Zfhx4,Zfhx4_fiveUTR,3,5221640,5221689,5221640,5221641,50,+,CGATCGCTTCCATTGAGAGCAATGCAAAAACACAGCCCGGGTATGTAACA,5' UTR,3,5218526,5413165,194640,1,Zfhx4-203,3114,Zfhx4-203;Zfhx4-202;Zfhx4-201;Zfhx4-204,Zfhx4;Zfhx4;Zfhx4;Zfhx4,0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,10,77,80892,ENSMUSG00000025255,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
11141,cg23423113,-0.0000238,0.00000597,-3.979440134,0.0000861,loss,ns,-0.00000752,0.0000101,-0.740843734,0.459348978,neg,ns,-0.003518052,0.002972818,-1.18340632,0.237554855,neg,ns,0.62423609,-0.000170515,0.000102235,-1.667877535,0.096349797,neg,ns,0.873461618,Smad5,Smad5_Exon,13,56732918,56732967,56732918,56732919,50,-,CGTGTTGGAGAAGCTTTTCATGCATCTTCTACTAGTGTGTTAGTAGATGG,"Exon (Smad5-201/Smad5, exon 5 of 7)",13,56703010,56742377,39368,1,Smad5-201,29908,Smad5-201;Smad5-206;Smad5-203;Smad5-204;Smad5-202;Smad5-205,Smad5;Smad5;Smad5;Smad5;Smad5;Smad5,0;0;0;0;0;-50,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,17129,ENSMUSG00000021540,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9895,cg17856858,0.0000318,0.0000116,2.73369213,0.006622725,gain,ns,0.0000147,0.0000198,0.740838485,0.459352156,pos,ns,0.025051492,0.00579684,4.32157696,0.0000209,pos,ns,4.679972724,-0.000713572,0.000199353,-3.579440449,0.000399499,neg,ns,0.297823701,S1pr3,S1pr3_Exon,13,51418991,51419040,51419039,51419040,50,+,TAAATTTCACAACCGCATGTACTTTTTCATTGGCAACCTGGCTCTCTGCG,"Exon (S1pr3-201/S1pr3, exon 2 of 2)",13,51408639,51422797,14159,1,S1pr3-201,10352,S1pr3-201,S1pr3,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,13610,ENSMUSG00000067586,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25808,cg02000659,0.00000909,0.00000924,0.983542362,0.326107566,gain,ns,0.0000116,0.0000157,0.740810809,0.459368915,pos,ns,0.005200586,0.004600734,1.130381644,0.259189253,pos,ns,0.586383009,-0.000166972,0.000158219,-1.05532191,0.292099888,neg,ns,0.155899382,Uncx,Uncx_Intergenic_downstream,5,139550463,139550512,139550463,139550464,50,-,CGGATCATTATGGGAGAGTGTAAATTGTTTTTGCTCTATTATGCATCCGA,Downstream (2-3kb),5,139543898,139545268,1371,1,Uncx-202,6614,Uncx-201,Uncx,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,59,88,22255,ENSMUSG00000029546,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
964,cg24398259,-0.0000126,0.00000808,-1.563808501,0.118882772,loss,ns,-0.0000102,0.0000137,-0.740761202,0.459398954,neg,ns,-0.007279887,0.004019934,-1.810946785,0.071116983,neg,ns,1.148026679,-0.000195803,0.000138245,-1.416347601,0.157677787,neg,ns,0.810293812,Fhit,Fhit_Intron,14,10166793,10166842,10166841,10166842,50,-,CACCACATTATTAAACATGACAAAAAGCTTCTGAATTGGAGCTTAAAACG,"Intron (Fhit-204/Fhit, intron 2 of 6)",14,9550092,10453458,903367,2,Fhit-204,286616,Fhit-204;Fhit-206;Fhit-201;Fhit-208;Fhit-205;Fhit-203;Fhit-207;Fhit-202,Fhit;Fhit;Fhit;Fhit;Fhit;Fhit;Fhit;Fhit,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,6,14198,ENSMUSG00000060579,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11262,cg09592146,-0.0000156,0.0000089,-1.746951127,0.081636137,loss,ns,0.0000112,0.0000151,0.74069711,0.459437767,pos,ns,-0.003974684,0.004431509,-0.896914281,0.370460655,neg,ns,0.43125791,0.0000772,0.000152399,0.506432308,0.612913182,pos,ns,0.785283681,Arhgef6,Arhgef6_Exon,X,57243408,57243457,57243456,57243457,50,-,TGCTGATGGTCTAAGTGGAGGTGCAGGTCGTAGACAACTTAAACTCCACG,"Exon (Arhgef6-201/Arhgef6, exon 16 of 22)",20,57231485,57338729,107245,2,Arhgef6-201,95272,Arhgef6-205;Arhgef6-201;Arhgef6-202;Arhgef6-207,Arhgef6;Arhgef6;Arhgef6;Arhgef6,-2519;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,5,73341,ENSMUSG00000031133,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24524,cg26709300,-0.000076,0.0000139,-5.465583453,0.000000095,loss,yes,-0.0000175,0.0000236,-0.74060301,0.459494754,neg,ns,0.02266239,0.00691842,3.275659828,0.001173584,pos,ns,2.930485656,-0.001498414,0.000237924,-6.297871741,1.03E-09,neg,yes,0.769543345,Ypel3,Ypel3_Exon,7,126777843,126777892,126777843,126777844,50,+,CGGATTTCAAAGCCCAAGACGTTTCAGGCCTACTTGGATGATTGTCACCG,Promoter (<=1kb),7,126776955,126780514,3560,1,Ypel3-201,888,Gdpd3-201;Gdpd3-203;Tbx6-202;Tbx6-201;Ypel3-201;Ypel3-210;Ypel3-204;Ypel3-209;Ypel3-211;Ypel3-203;Ypel3-207;Ypel3-205;Ypel3-202;Ypel3-208;Ypel3-206,Gdpd3;Gdpd3;Tbx6;Tbx6;Ypel3;Ypel3;Ypel3;Ypel3;Ypel3;Ypel3;Ypel3;Ypel3;Ypel3;Ypel3;Ypel3,11509;9323;-3591;-3591;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,4,66090,ENSMUSG00000042675,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U4,Pr-F
2021,cg09311036,-0.0000115,0.00000762,-1.509127531,0.132284703,loss,ns,0.00000958,0.0000129,0.74055632,0.459523032,pos,ns,0.006050489,0.003790542,1.596206729,0.111461519,pos,ns,0.952875044,-0.000296301,0.000130356,-2.273006852,0.023709856,neg,ns,0.871639259,Gm48312,Gm48312_Intergenic_downstream,14,17299491,17299540,17299539,17299540,50,+,CAATTTTATGGCAGAAGTTTATCACCATAAGGTGCATTTCATGACAGCCG,Distal Intergenic,14,17121503,17122100,598,1,Gm48312-201,177988,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,5,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6943,cg20375994,0.0000141,0.00000278,5.054038013,0.000000741,gain,yes,-0.0000035,0.00000472,-0.740222773,0.45972507,neg,ns,0.003039139,0.001383714,2.196363249,0.028806205,pos,ns,1.540513951,-0.0000935,0.0000476,-1.965802696,0.050213672,neg,ns,0.062436248,Tmem178b,Tmem178b_Exon,6,39873175,39873224,39873175,39873176,50,+,CGCCAGGAAGCACAGGGACAGGTGCAAGGCCTTCAACACCCGCCGGGTCG,"Exon (Tmem178b-204/Tmem178b, exon 1 of 4)",6,39871461,40245772,374312,1,Tmem178b-204,1714,Tmem178b-204;Tmem178b-203,Tmem178b;Tmem178b,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,7,434008,ENSMUSG00000057716,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
16117,cg12973326,0.000053,0.00000678,7.815868818,8.57E-14,gain,yes,0.00000853,0.0000115,0.740218994,0.45972736,pos,ns,0.007393738,0.003374336,2.191168002,0.029183636,pos,ns,1.534860604,0.000086,0.000116043,0.741023917,0.459239881,pos,ns,0.116670184,Pcdh17,Pcdh17_Exon,14,84446433,84446482,84446481,84446482,50,+,CAAGGAGATCTGCATGATCAAGGTAGAGATCCAGGACATCAACGACAACG,"Exon (Pcdh17-201/Pcdh17, exon 1 of 4)",14,84443563,84539002,95440,1,Pcdh17-201,2870,Pcdh17-201;Pcdh17-202,Pcdh17;Pcdh17,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,13,219228,ENSMUSG00000035566,conserved gene and region,14,84446475,84446662,188,*,188,21,0.638297872,1.159811986,0.111702128,2.17E-17,CpGisland,TRUE,U3,Pr-B
4277,cg24009011,-0.000304447,0.0000133,-22.89381571,1.34E-68,loss,yes,-0.0000167,0.0000226,-0.740109177,0.459793889,neg,ns,0.02304217,0.00661867,3.481389781,0.00057044,pos,ns,3.243790014,-0.002229192,0.000227616,-9.793674724,6.58E-20,neg,yes,0.711166293,Scube3,Scube3_Exon,17,28166005,28166054,28166005,28166006,50,+,CGTATTACCACGGCCAGACGGAGCAGTGTGTGCCATGCCCAGCGGGCACC,"Exon (Scube3-201/Scube3, exon 16 of 22)",17,28142141,28174854,32714,1,Scube3-201,23864,Scube3-201;Scube3-207;Scube3-202;Scube3-203;Scube3-206;Scube3-205;Scube3-204,Scube3;Scube3;Scube3;Scube3;Scube3;Scube3;Scube3,0;0;0;0;7131;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,7,268935,ENSMUSG00000038677,conserved gene and region,17,28165967,28166085,119,*,119,9,0.672268908,0.669793621,0.075630252,0.00000392,CpGisland,TRUE,U11,Tr-P
4347,cg18780257,0.0000548,0.00000747,7.335490135,1.95E-12,gain,yes,-0.00000939,0.0000127,-0.740105565,0.459796078,neg,ns,0.009782785,0.003715937,2.632656308,0.008896389,pos,ns,2.050786213,-0.000275094,0.000127791,-2.152690973,0.032114403,neg,ns,0.080681813,Fgf12,Fgf12_fiveUTR,16,28445154,28445203,28445202,28445203,50,+,TTCTGCCGGATCAAGGAGCTGGCTATCGCCGCAGCCATAGCTGCTCAGCG,5' UTR,16,28160098,28446277,286180,2,Fgf12-201,1074,Fgf12-201;Fgf12-205;Fgf12-202;Fgf12-204,Fgf12;Fgf12;Fgf12;Fgf12,0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,5,14167,ENSMUSG00000022523,conserved gene and region,16,28445001,28445337,337,*,337,30,0.679525223,0.772345302,0.089020772,1.48E-21,CpGisland,TRUE,U3,Pr-B
6232,cg11730804,0.00000221,0.00000346,0.636748926,0.524758305,gain,ns,-0.00000436,0.00000589,-0.740063526,0.459821548,neg,ns,0.00375002,0.001724335,2.174762362,0.030403696,pos,ns,1.517073615,-0.000172441,0.0000593,-2.907947706,0.003900711,neg,ns,0.925202691,Tenm2,Tenm2_Intron,11,36476047,36476096,36476047,36476048,50,+,CGCCACAACATCTGTGCCACAGTTCTTGCTGTTTAGTAATATGCTGTAAC,"Intron (Tenm2-202/Tenm2, intron 4 of 30)",11,36006656,37235882,1229227,2,Tenm2-202,759786,Tenm2-202;Tenm2-208;Tenm2-201;Tenm2-204;Tenm2-205;Tenm2-206,Tenm2;Tenm2;Tenm2;Tenm2;Tenm2;Tenm2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,47,84,23964,ENSMUSG00000049336,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25576,cg11011772,0.00000281,0.00000202,1.392568754,0.164748231,gain,ns,-0.00000254,0.00000343,-0.740014137,0.459851472,neg,ns,-0.001411178,0.001005228,-1.403838364,0.161367959,neg,ns,0.792182695,0.0000345,0.0000346,0.997654516,0.319225006,pos,ns,0.954671372,Ebf3,Ebf3_Intron,7,137253004,137253053,137253004,137253005,50,+,CGGCGTGTGGAGCCATACTGTAATTAGGAAGAAATGCTGTACAGGTTTTC,"Intron (Ebf3-204/Ebf3, intron 6 of 15)",7,137193673,137314445,120773,2,Ebf3-204,61392,Ebf3-204;Ebf3-201;Ebf3-202;Ebf3-203;Ebf3-208;Ebf3-205,Ebf3;Ebf3;Ebf3;Ebf3;Ebf3;Ebf3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,62,84,13593,ENSMUSG00000010476,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17618,cg16121787,-0.0000286,0.00000591,-4.828842764,0.00000216,loss,ns,0.00000744,0.00001,0.740007948,0.459855222,pos,ns,-0.001641161,0.002943799,-0.557497868,0.577589643,neg,ns,0.238380603,-0.000175295,0.000101237,-1.731528332,0.084352429,neg,ns,0.902961745,Elavl2,Elavl2_Exon,4,91260911,91260960,91260959,91260960,50,+,CCATTTAGGCCTTTGATAGCTTCTTCTGCCTCAATTCGCTTGTCAAATCG,"Exon (Elavl2-204/Elavl2, exon 5 of 6)",4,91250763,91372034,121272,2,Elavl2-204,111074,Elavl2-204;Elavl2-201;Elavl2-207;Elavl2-208;Elavl2-202;Elavl2-209;Elavl2-206;Elavl2-203;Elavl2-205;Elavl2-215;Elavl2-216,Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,31,15569,ENSMUSG00000008489,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3363,cg19806075,0.00000116,0.00000176,0.660383385,0.509498227,gain,ns,0.00000221,0.00000299,0.739972125,0.459876927,pos,ns,0.001202118,0.000876848,1.370952873,0.171381346,pos,ns,0.766036451,-0.0000485,0.0000302,-1.607823645,0.108891772,neg,ns,0.951179856,Papolg,Papolg_threeUTR,11,23870213,23870262,23870261,23870262,50,-,ATATCATATGTCAAGTCTATGTTGACACTTTCTGCATTTTCTACTCTCCG,3' UTR,11,23862646,23895253,32608,2,Papolg-201,24991,Papolg-201;Papolg-203;Papolg-204;Papolg-202,Papolg;Papolg;Papolg;Papolg,0;-1743;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,9,216578,ENSMUSG00000020273,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23872,cg24012693,-0.00000196,0.00000939,-0.208288125,0.835140784,loss,ns,0.0000118,0.000016,0.739447013,0.460195161,pos,ns,0.003860073,0.004673325,0.825980021,0.409450649,pos,ns,0.387798437,0.0000309,0.000160715,0.192550256,0.847437284,pos,ns,0.593387339,Cdan1,Cdan1_threeUTR,2,120730320,120730369,120730320,120730321,50,+,CGCTCCTCTTGCAGACTTCTGCACCCTGGGGGAAGGCCAAGGCCCCAAGG,3' UTR,2,120716154,120731517,15364,2,Cdan1-202,1148,Cdan1-202;Cdan1-201;Cdan1-207;Cdan1-204;Cdan1-209;Cdan1-208;Cdan1-206;Stard9-205;Stard9-202;Ttbk2-202;Ttbk2-203;Ttbk2-201,Cdan1;Cdan1;Cdan1;Cdan1;Cdan1;Cdan1;Cdan1;Stard9;Stard9;Ttbk2;Ttbk2;Ttbk2,0;0;0;-2343;-1682;0;0;0;15052;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,3,68968,ENSMUSG00000027284,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11332,cg25322223,-0.000000994,0.000000452,-2.201336033,0.0284489,loss,ns,0.000000567,0.000000767,0.739425298,0.460208324,pos,ns,0.000127671,0.000224791,0.567952347,0.570478449,pos,ns,0.243760757,-0.00000476,0.00000773,-0.616164148,0.538238357,neg,ns,0.011936773,Zhx2,Zhx2_fiveUTR,15,57694632,57694681,57694632,57694633,50,+,CGTATGCAAATACGCATGCTGACGTTACAGATCATGTGGGTTTTGGCGTA,Promoter (<=1kb),15,57694665,57839832,145168,1,Zhx2-201,0,Zhx2-201;Zhx2-202,Zhx2;Zhx2,0;-1048,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,6,387609,ENSMUSG00000071757,conserved gene but different region,15,57694551,57694697,147,*,147,11,0.551020408,1.004347826,0.074829932,0.000000227,CpGisland,TRUE,U2,Pr-W
25957,cg24159177,-0.00000513,0.00000324,-1.579649687,0.115206896,loss,ns,0.00000408,0.00000551,0.739392638,0.460228121,pos,ns,0.000282442,0.001614768,0.174911642,0.861263246,pos,ns,0.064864086,-0.0000761,0.0000555,-1.370459862,0.171534943,neg,ns,0.936007506,Col4a5,Col4a5_Exon,X,141683545,141683594,141683545,141683546,50,+,CGGCTGGCAGCTGCCTTCGTCGCTTTAGTACCATGCCTTTCATGTTCTGC,"Exon (Col4a5-202/Col4a5, exon 50 of 53)",20,141475385,141689234,213850,1,Col4a5-202,208160,Col4a5-202;Col4a5-201;Col4a5-204;Gm15282-201,Col4a5;Col4a5;Col4a5;Gm15282,0;0;0;-2804,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,12830,ENSMUSG00000031274,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27414,cg11407681,-0.00000947,0.00000163,-5.800524298,1.63E-08,loss,yes,0.00000205,0.00000277,0.739037449,0.460443456,pos,ns,-0.001083556,0.000812563,-1.333504226,0.183345388,neg,ns,0.736730009,0.0000212,0.0000279,0.75873008,0.448590517,pos,ns,0.941188459,Fam78b,Fam78b_Exon,1,167078570,167078619,167078618,167078619,50,+,GAGAGTAAAAGCCATCAGTGACTCAGATGGGGTGAGCTACCCTTGGTACG,"Exon (Fam78b-205/Fam78b, exon 2 of 3)",1,167001417,167091302,89886,1,Fam78b-205,77153,Fam78b-205;Fam78b-206;Fam78b-204;Fam78b-202;Fam78b-201;Fam78b-203,Fam78b;Fam78b;Fam78b;Fam78b;Fam78b;Fam78b,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,9,226610,ENSMUSG00000060568,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17349,cg07253239,0.0000183,0.0000055,3.335810158,0.000953887,gain,ns,0.0000069,0.00000934,0.738995398,0.460468954,pos,ns,-0.000771637,0.002737078,-0.281920111,0.778192879,neg,ns,0.108912748,0.0000415,0.0000941,0.440543524,0.659850533,pos,ns,0.914381843,Agap1,Agap1_Intron,1,89798904,89798953,89798904,89798905,50,+,CGTTTTTGATCACACACTGATTGGGCACAGTTTTAGCCCATCTTCTAGTC,"Intron (Agap1-201/Agap1, intron 13 of 17)",1,89454806,89897617,442812,1,Agap1-201,344098,Agap1-201;Agap1-204;Agap1-202;Agap1-205,Agap1;Agap1;Agap1;Agap1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,29,347722,ENSMUSG00000055013,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7221,cg22639428,0.000009,0.00000583,1.544113363,0.12358106,gain,ns,0.00000732,0.0000099,0.738978482,0.460479211,pos,ns,-0.002731425,0.002900443,-0.941726689,0.347065864,neg,ns,0.4595881,0.0000589,0.0000997,0.590166697,0.555508839,pos,ns,0.865603799,Gria3,Gria3_Intron,X,41669284,41669333,41669284,41669285,50,+,CGATTACTCAAAGCGATATGGGCAGGCCCTGGTAAATATAGCGTTGCTGT,"Intron (Gria3-202/Gria3, intron 15 of 16)",20,41401128,41676585,275458,1,Gria3-202,268156,Gria3-202;Gria3-201;Gria3-208;Gria3-206;Gria3-209,Gria3;Gria3;Gria3;Gria3;Gria3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,26,53623,ENSMUSG00000001986,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14388,cg06587526,0.0000443,0.0000164,2.706254565,0.007181527,gain,ns,-0.0000206,0.0000278,-0.738937713,0.460503931,neg,ns,0.016862372,0.008154653,2.067821983,0.039486098,pos,ns,1.403555782,-0.00083565,0.000280438,-2.979805073,0.003112401,neg,ns,0.467981634,Wdr81,Wdr81_Intron,11,75443997,75444046,75444045,75444046,50,+,GATCCTCCAAGCAAGACAAATATGGACAAGGGTTACTCATTAGAACATCG,"Intron (Wdr81-204/Wdr81, intron 9 of 9)",11,75440944,75454717,13774,2,Wdr81-204,10671,Serpinf2-201;Serpinf2-203;Serpinf2-204;Wdr81-204;Wdr81-201;Wdr81-202;Wdr81-203,Serpinf2;Serpinf2;Serpinf2;Wdr81;Wdr81;Wdr81;Wdr81,-4496;-4406;-4419;0;0;0;5734,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,192652,ENSMUSG00000045374,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25227,cg10570838,-0.00000514,0.00000234,-2.195387122,0.028876796,loss,ns,-0.00000294,0.00000398,-0.738921037,0.460514044,neg,ns,-0.001200113,0.001164792,-1.030323915,0.303661162,neg,ns,0.51761075,-0.0000251,0.0000401,-0.626803039,0.531249674,neg,ns,0.037303508,Hmgn2,Hmgn2_fiveUTR,4,133967917,133967966,133967965,133967966,50,-,GGGTTTATAAAGTTTTTATAGCGCTGGGAGCCCCGGACCGGTTAGAACCG,Promoter (<=1kb),4,133964738,133968001,3264,2,Hmgn2-203,35,Dhdds-209;Dhdds-201;Dhdds-207;Dhdds-208;Dhdds-210;Dhdds-204;Dhdds-206;Dhdds-203;Dhdds-202;Dhdds-205;Hmgn2-203;Hmgn2-204;Hmgn2-212;Hmgn2-201;Hmgn2-202;Hmgn2-211;Hmgn2-210;Hmgn2-206;Hmgn2-205;Hmgn2-207;Hmgn2-208;Hmgn2-213;Hmgn2-209,Dhdds;Dhdds;Dhdds;Dhdds;Dhdds;Dhdds;Dhdds;Dhdds;Dhdds;Dhdds;Hmgn2;Hmgn2;Hmgn2;Hmgn2;Hmgn2;Hmgn2;Hmgn2;Hmgn2;Hmgn2;Hmgn2;Hmgn2;Hmgn2;Hmgn2,0;0;0;0;0;0;26233;32427;32427;32952;0;-476;0;0;0;0;-642;-666;-674;0;0;0;-56,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,4,15331,ENSMUSG00000003038,mapped to different genes,4,133967280,133968016,737,*,737,106,0.736770692,1.062855433,0.143826323,2.03E-99,CpGisland,TRUE,U1,Pr-A
15650,cg10726346,0.0000977,0.0000224,4.370466701,0.0000169,gain,ns,0.0000281,0.000038,0.7389071,0.460522495,pos,ns,0.089801696,0.011126405,8.071042925,1.55E-14,pos,yes,13.80953492,-0.001492432,0.000382636,-3.900395671,0.00011779,neg,ns,0.41141977,Nfib,Nfib_Intron,4,82499355,82499404,82499403,82499404,50,+,TTTGGAGCATGCTCTCAGCAAGAGGCTGCTGGTGGCACAAAGAGCATGCG,"Intron (Nfib-201/Nfib, intron 1 of 11)",4,82290173,82505308,215136,2,Nfib-201,5904,Nfib-201;Nfib-203;Nfib-202;Nfib-205;Nfib-206;Nfib-204;Nfib-207;Nfib-209;Nfib-210;Nfib-208;Nfib-212;Nfib-211,Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,66,18028,ENSMUSG00000008575,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16303,cg08687284,-0.00000589,0.00000418,-1.407970831,0.160141718,loss,ns,-0.00000525,0.0000071,-0.738757414,0.460613268,neg,ns,-0.00134372,0.002081496,-0.645554623,0.519045358,neg,ns,0.284794689,-0.0000275,0.0000716,-0.383820302,0.701374753,neg,ns,0.915783295,Mrm1,Mrm1_Intergenic_downstream,11,84726071,84726120,84726119,84726120,50,+,TTCATGGGACATTAAACCAGGAGTCAGGTGATGGGTTCCTTCCGTCTACG,Distal Intergenic,11,84814743,84815390,648,2,Mrm1-203,89270,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,37,42,217038,ENSMUSG00000018405,conserved gene and region,11,84726113,84726148,36,*,36,6,0.722222222,1.411764706,0.166666667,0.00000387,CpGisland,TRUE,U11,Tr-P
17175,cg22674717,0.000106409,0.0000131,8.130719469,1.03E-14,gain,yes,-0.0000164,0.0000222,-0.738667078,0.460668055,neg,ns,0.01576831,0.006513647,2.42081114,0.016060113,pos,ns,1.794251405,-0.000652699,0.000224004,-2.913785891,0.003830437,neg,ns,0.062988933,Sall1,Sall1_Intron,8,89042618,89042667,89042666,89042667,50,+,CGATTAATCATAGAGGGGCTCTTTGAAAGGCGATTGGCACCGGGCCAGCG,"Intron (Sall1-201/Sall1, intron 1 of 3)",8,89027235,89044162,16928,2,Sall1-201,1495,Sall1-201,Sall1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,15,58198,ENSMUSG00000031665,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
1194,cg17152790,0.0000724,0.00000868,8.340435884,2.46E-15,gain,yes,-0.0000109,0.0000148,-0.738636328,0.460686705,neg,ns,0.00650816,0.004322316,1.505711284,0.133159539,pos,ns,0.875627718,-0.000141401,0.000148644,-0.951275299,0.342205717,neg,ns,0.464190878,Gm14512,Gm14512_Intergenic_downstream,X,12008102,12008151,12008102,12008103,50,-,CGGTGCAGTACCTCACTTCTGTCACTATTAATGAGTTGCAAATTAATGTG,Distal Intergenic,20,11984468,11984697,230,1,Gm14512-201,23683,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,22,22,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6229,cg20928877,-0.00000256,0.0000034,-0.752567232,0.452281086,loss,ns,-0.00000426,0.00000577,-0.738603935,0.460706352,neg,ns,0.004761628,0.001691488,2.815053171,0.005189048,pos,ns,2.284912339,-0.000243161,0.0000582,-4.180169118,0.0000379,neg,ns,0.916504122,Tshz3,Tshz3_Intergenic_upstream,7,36475961,36476010,36475961,36475962,50,-,CGGAAGTTCTGAAGAGCCTTTTAATCAACAAAAGTAATTTTGCAAACAAC,Distal Intergenic,7,36698118,36773553,75436,1,Tshz3-201,-222157,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,12,58,243931,ENSMUSG00000021217,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5560,cg00670697,-0.00000589,0.00000206,-2.862517122,0.004489059,loss,ns,0.00000258,0.0000035,0.738592826,0.46071309,pos,ns,-0.001781303,0.001024536,-1.738643911,0.083090223,neg,ns,1.080450073,0.0000779,0.0000352,2.210338897,0.027811777,pos,ns,0.967798862,Pbx3,Pbx3_Intron,2,34256336,34256385,34256384,34256385,50,-,AGCTGCCATACAAGCCATGTATAAACACACTGGGATGCTTCAGGCAGGCG,"Intron (Pbx3-202/Pbx3, intron 2 of 7)",2,34171457,34372038,200582,2,Pbx3-202,115653,Pbx3-202;Pbx3-201;Pbx3-210;Pbx3-206;Pbx3-207;Pbx3-209;Pbx3-204;Pbx3-205;Pbx3-203,Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,82,18516,ENSMUSG00000038718,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18525,cg18878757,0.0000119,0.00000281,4.222102844,0.0000318,gain,ns,0.00000353,0.00000478,0.738543701,0.460742886,pos,ns,0.003666559,0.001399623,2.619676276,0.009234385,pos,ns,2.034592025,-0.0000265,0.0000481,-0.551111833,0.581953989,neg,ns,0.059041325,Hoxb9,Hoxb9_Exon,11,96272024,96272073,96272024,96272025,50,-,CGAAGGAAGCGAGGACAAAGAGAGGCCGGATCAAAGTAAGTTATAAAAAG,Promoter (<=1kb),11,96271457,96276595,5139,1,Hoxb9-201,567,Hoxb9-201;Hoxb9-202,Hoxb9;Hoxb9,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,22,15417,ENSMUSG00000020875,mapped to different genes,11,96271433,96272051,619,*,619,70,0.675282714,0.992327951,0.113085622,2.33E-57,CpGisland,TRUE,U13,Hc-P
21198,cg07635141,-0.00000713,0.0000024,-2.965259486,0.003259084,loss,ns,-0.00000302,0.00000408,-0.738442376,0.460804348,neg,ns,-0.000334326,0.001196448,-0.279432623,0.780099178,neg,ns,0.10785018,-0.0000256,0.0000411,-0.621715132,0.534586141,neg,ns,0.938726624,Mpped2,Mpped2_Intron,2,106716172,106716221,106716172,106716173,50,+,CGGAATCTCATTAGGGACAGCTTCAAAGATCAGTTCCTCGCGTCCATAAA,"Intron (Mpped2-202/Mpped2, intron 2 of 6)",2,106693269,106868356,175088,1,Mpped2-202,22903,Mpped2-202;Mpped2-206;Mpped2-201;Mpped2-203;Mpped2-204,Mpped2;Mpped2;Mpped2;Mpped2;Mpped2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,33,77015,ENSMUSG00000016386,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8507,cg14471781,-0.0000332,0.00000756,-4.391304091,0.0000155,loss,ns,0.00000948,0.0000128,0.738214954,0.460942314,pos,ns,0.016914403,0.00376318,4.494710571,0.00000985,pos,ns,5.006504621,-0.000620533,0.000129415,-4.794891574,0.00000253,neg,ns,0.635764978,Lbx1,Lbx1_Intergenic_upstream,19,45248861,45248910,45248861,45248862,50,-,CGGCGCACAAATGCTCAACTTTATGTACTTTTAACTAGAGGTGTAACAGA,Distal Intergenic,19,45232684,45235812,3129,2,Lbx1-201,-13098,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,15,50,16814,ENSMUSG00000025216,mapped to different genes,19,45248766,45248862,97,*,97,10,0.659793814,1.010416667,0.103092784,4.63E-08,CpGisland,TRUE,NA,NRS
24058,cg04564274,-0.00000195,0.00000326,-0.599581517,0.549223136,loss,ns,0.00000408,0.00000553,0.738086835,0.461020047,pos,ns,0.001197331,0.001621425,0.738443515,0.460803657,pos,ns,0.336484083,-0.0000484,0.0000558,-0.867755036,0.386199678,neg,ns,0.914494888,Clybl,Clybl_Intron,14,122367323,122367372,122367323,122367324,50,+,CGCCACGGAGCTTGGTCCCAAACTATACTGTACTTCACACTCGATTTATT,"Intron (Clybl-201/Clybl, intron 2 of 7)",14,122181704,122402234,220531,1,Clybl-201,185619,Clybl-201;Clybl-202,Clybl;Clybl,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,13,69634,ENSMUSG00000025545,mapped to different genes,14,122367319,122367490,172,*,172,14,0.552325581,1.076923077,0.081395349,9.34E-10,CpGisland,TRUE,U15,NS
4653,cg11825649,-0.000000343,0.000000727,-0.471223605,0.637812504,loss,ns,-0.000000912,0.00000124,-0.738080739,0.461023746,neg,ns,0.000356273,0.000361876,0.984517445,0.325628919,pos,ns,0.487277032,-0.0000366,0.0000124,-2.939731938,0.003531899,neg,ns,0.010440412,Hes1,Hes1_Promoter,16,30065288,30065337,30065288,30065289,50,-,CGAGCCGTTCGCGTGCAGTCCCAGATATATATAGAGGCCGCCAGGGCCTA,Promoter (<=1kb),16,30064384,30065580,1197,1,Hes1-202,904,Hes1-202;Hes1-201;Hes1-203;Hes1-204,Hes1;Hes1;Hes1;Hes1,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,3,20,15205,ENSMUSG00000022528,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26618,cg15215714,0.000000149,0.00000111,0.134473412,0.893115498,gain,ns,0.00000139,0.00000188,0.738027003,0.461056352,pos,ns,0.001181079,0.000550851,2.144099447,0.032802387,pos,ns,1.484094547,-0.0000427,0.0000189,-2.253362183,0.024934934,neg,ns,0.972506029,Pex14,Pex14_Intron,4,148989027,148989076,148989075,148989076,50,+,TGCAAATTTAAGCCAACGGCTTCTATTGTCTCTGAACATAAAGCTGATCG,"Intron (Pex14-201/Pex14, intron 3 of 8)",4,148960535,149099876,139342,2,Pex14-201,110800,Pex14-201;Pex14-202;Pex14-205;Pex14-203,Pex14;Pex14;Pex14;Pex14,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,41,48,56273,ENSMUSG00000028975,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19187,cg22872620,-0.0000102,0.00000506,-2.013427847,0.044933594,loss,ns,-0.00000635,0.0000086,-0.737971141,0.461090249,neg,ns,-0.005399304,0.002520892,-2.141823202,0.032986774,neg,ns,1.481660161,0.000153219,0.0000867,1.767368935,0.078150252,pos,ns,0.884939914,Gm32308,Gm32308_Intergenic_downstream,6,98767937,98767986,98767985,98767986,50,+,CTGAAATAAAGTGGTCATCATCTAATTAACAGAACATGTTTTAATTACCG,Distal Intergenic,6,98757749,98758028,280,1,Gm32308-201,10188,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,10,102634810,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9299,cg11403906,-0.00000233,0.000000906,-2.574398493,0.01050537,loss,ns,0.00000114,0.00000154,0.737771574,0.461211357,pos,ns,-0.0000295,0.000450856,-0.065477871,0.94783573,neg,ns,0.023266924,-0.0000087,0.0000155,-0.561083686,0.575145829,neg,ns,0.017230846,Nr4a3,Nr4a3_Promoter,4,48045077,48045126,48045077,48045078,50,-,CGTAGCGTCCCATGGCGTCACATTGACGTCTCGCATTCCAGGCACTCTAT,Promoter (<=1kb),4,48045153,48086445,41293,1,Nr4a3-201,-76,Nr4a3-201;Nr4a3-204;Nr4a3-203,Nr4a3;Nr4a3;Nr4a3,0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,6,20,18124,ENSMUSG00000028341,mapped to different genes,4,48045031,48045109,79,*,79,9,0.670886076,1.058035714,0.113924051,0.000000116,CpGisland,TRUE,U2,Pr-W
1672,cg23819220,-0.0000279,0.00000924,-3.01523124,0.002780101,loss,ns,-0.0000116,0.0000157,-0.73743564,0.461415261,neg,ns,-0.003152941,0.004597173,-0.685843373,0.493324471,neg,ns,0.306867341,-0.0000392,0.000158096,-0.247940788,0.804344372,neg,ns,0.937163213,Gm50095,Gm50095_Intergenic_upstream,18,14192580,14192629,14192628,14192629,50,-,TATGCACTGTGAGTTTATATGCCACACGCACTACATTTTTCTATATTACG,Distal Intergenic,18,14308387,14308780,394,1,Gm50095-201,-115807,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14802,cg27655941,0.00012471,0.0000139,8.964534699,3.00E-17,gain,yes,0.0000174,0.0000236,0.737281802,0.461508654,pos,ns,0.043892237,0.006923908,6.339228463,8.14E-10,pos,ns,9.089338486,-0.000517603,0.000238113,-2.173772752,0.03047868,neg,ns,0.670019815,Myo18a,Myo18a_Intron,11,77830755,77830804,77830803,77830804,50,+,CGTCTTGATATGGAGTTGGTGTTTATTATTTCAAAACCAGATTGTTACCG,"Intron (Myo18a-208/Myo18a, intron 19 of 41)",11,77763246,77865980,102735,1,Myo18a-208,67509,Myo18a-208;Myo18a-209;Myo18a-207;Myo18a-201;Myo18a-203;Myo18a-222;Myo18a-223;Myo18a-211;Myo18a-205;Myo18a-210;Myo18a-224;Myo18a-202;Myo18a-220;Myo18a-221;Myo18a-218,Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a,0;0;0;0;0;0;0;0;0;0;0;0;0;0;6201,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,18,360013,ENSMUSG00000000631,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23714,cg24463880,0.0000425,0.00000771,5.511999789,7.48E-08,gain,yes,0.00000966,0.0000131,0.737123832,0.461604566,pos,ns,-0.00541648,0.003839794,-1.410617422,0.159360113,neg,ns,0.797620372,0.000182378,0.00013205,1.381130072,0.168233729,pos,ns,0.84363986,Hivep3,Hivep3_Exon,4,120122948,120122997,120122948,120122949,50,+,CGCTGCAAGAAGCCCAGCATGCTGAAGAAACACATCCGCACCCACACTGA,"Exon (Hivep3-202/Hivep3, exon 6 of 9)",4,119814495,120138045,323551,1,Hivep3-202,308453,Hivep3-202;Hivep3-209,Hivep3;Hivep3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,8,16656,ENSMUSG00000028634,conserved gene and region,4,120122884,120123003,120,*,120,9,0.533333333,1.071428571,0.075,0.0000042,CpGisland,TRUE,NA,NRS
15901,cg21912073,-0.00000215,0.00000433,-0.495834092,0.620362802,loss,ns,-0.00000543,0.00000736,-0.73701903,0.461668204,neg,ns,0.000757734,0.00215714,0.351268008,0.72562591,pos,ns,0.139287218,0.0000579,0.0000742,0.781120511,0.435327722,pos,ns,0.911430875,Ccdc171,Ccdc171_Intron,4,83795001,83795050,83795049,83795050,50,-,CTTCTTAACATTCTCCCCCAGCACTCTGAATTAGAGATTTATTTGCAACG,"Intron (Ccdc171-201/Ccdc171, intron 23 of 25)",4,83525545,83864670,339126,1,Ccdc171-201,269456,Ccdc171-201;Ccdc171-206;Ccdc171-203;Ccdc171-205,Ccdc171;Ccdc171;Ccdc171;Ccdc171,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,9,320226,ENSMUSG00000052407,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5175,cg05801021,0.00000743,0.00000203,3.655105049,0.000301843,gain,ns,0.00000254,0.00000345,0.737016098,0.461669985,pos,ns,0.002316341,0.001011124,2.29085853,0.022642439,pos,ns,1.645076799,-0.0000498,0.0000348,-1.43261191,0.152976392,neg,ns,0.050750661,Prrxl1,Prrxl1_Promoter,14,32599268,32599317,32599268,32599269,50,+,CGTGGGCCATTTGTAAGGCCCAATAGACCTATCCAAGTTACTCGCTGTAG,Promoter (<=1kb),14,32599407,32649204,49798,1,Prrxl1-203,-90,Prrxl1-203;Prrxl1-204;Prrxl1-202;Prrxl1-201;Prrxl1-205,Prrxl1;Prrxl1;Prrxl1;Prrxl1;Prrxl1,0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,14,23,107751,ENSMUSG00000041730,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
4857,cg03046590,-0.00000103,0.0000015,-0.686627806,0.492830576,loss,ns,0.00000188,0.00000255,0.736925407,0.461725057,pos,ns,0.000409804,0.000747002,0.548598503,0.583675886,pos,ns,0.233828249,-0.0000258,0.0000257,-1.002843657,0.316718436,neg,ns,0.977510201,Zbtb44,Zbtb44_Exon,9,31066727,31066776,31066727,31066728,50,+,CGCCTAAAGCATGAAGGTAAACGCTGTTTCCGGTGCCAGATATGTAGTGC,"Exon (Zbtb44-205/Zbtb44, exon 5 of 6)",9,31030644,31070233,39590,1,Zbtb44-205,36083,Zbtb44-205;Zbtb44-201;Zbtb44-206;Zbtb44-202;Zbtb44-204,Zbtb44;Zbtb44;Zbtb44;Zbtb44;Zbtb44,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,15,235132,ENSMUSG00000047412,conserved gene and region,9,31066713,31066901,189,*,189,12,0.486772487,1.07641196,0.063492064,0.00000032,CpGisland,TRUE,U10,Tr-S
1909,cg17252422,-0.0000047,0.00000354,-1.327838855,0.185208231,loss,ns,0.00000443,0.00000602,0.736905255,0.461737295,pos,ns,0.001960118,0.001762659,1.112023328,0.266989759,pos,ns,0.573505397,-0.0000339,0.0000606,-0.559762356,0.576045773,neg,ns,0.925057131,Ythdf3,Ythdf3_Exon,3,16205347,16205396,16205395,16205396,50,+,TTCAAGCATACCACCTCAATCTTTGATGACTTTGCACATTATGAAAAGCG,"Exon (Ythdf3-201/Ythdf3, exon 4 of 5)",3,16183212,16217037,33826,1,Ythdf3-201,22135,Ythdf3-201;Ythdf3-204;Ythdf3-203;Ythdf3-202,Ythdf3;Ythdf3;Ythdf3;Ythdf3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,8,229096,ENSMUSG00000047213,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10000,cg14032328,0.0000385,0.0000112,3.429714532,0.000686033,gain,ns,-0.000014,0.0000191,-0.73682606,0.461785391,neg,ns,0.00820199,0.005584742,1.468642704,0.142943703,pos,ns,0.844834971,-0.000250355,0.000192059,-1.303530532,0.193360932,neg,ns,0.576442563,Satb1,Satb1_Exon,17,51808079,51808128,51808079,51808080,50,+,CGGACTGCTGTGTCTGTTCATTTCAGGATCAATATATTCTTTGTTTTCGC,"Exon (Satb1-209/Satb1, exon 1 of 1)",17,51736187,51832672,96486,2,Satb1-208,24544,Satb1-208;Satb1-213;Satb1-204;Satb1-214;Satb1-203;Satb1-211;Satb1-207;Satb1-206;Satb1-202;Satb1-201;Satb1-209;Satb1-210,Satb1;Satb1;Satb1;Satb1;Satb1;Satb1;Satb1;Satb1;Satb1;Satb1;Satb1;Satb1,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,36,20230,ENSMUSG00000023927,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25615,cg21176478,0.0000184,0.00000285,6.445738884,4.40E-10,gain,yes,-0.00000357,0.00000484,-0.736361783,0.462067406,neg,ns,0.001537928,0.001418902,1.083885613,0.279257785,pos,ns,0.553994711,-0.0000122,0.0000488,-0.250511717,0.802357591,neg,ns,0.063780666,Ebf3,Ebf3_Promoter,7,137317523,137317572,137317523,137317524,50,+,CGTGCCACACACCAGTGGGCTCCCAGATGTCAAGCCGGAGTCAGTCAGAT,Promoter (3-4kb),7,137193721,137314445,120725,2,Ebf3-201,-3078,Ebf3-204;Ebf3-201;Ebf3-202;Ebf3-203;Ebf3-208;Ebf3-206,Ebf3;Ebf3;Ebf3;Ebf3;Ebf3;Ebf3,0;0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,9,84,13593,ENSMUSG00000010476,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
399,cg26272345,-0.00000928,0.0000022,-4.211513657,0.0000333,loss,ns,0.00000276,0.00000374,0.736232652,0.462145861,pos,ns,0.000999252,0.001096658,0.911179296,0.362908887,pos,ns,0.440202396,-0.0000471,0.0000377,-1.248380573,0.212833726,neg,ns,0.952392506,Zfhx4,Zfhx4_threeUTR,3,5415101,5415150,5415101,5415102,50,-,CGTAAGAGACAACATGGCCTCCTAAGGTGCAATCCTGCCGCTATAGTGAG,3' UTR,3,5218554,5415855,197302,1,Zfhx4-201,196547,Zfhx4-203;Zfhx4-201;Zfhx4-205,Zfhx4;Zfhx4;Zfhx4,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,77,80892,ENSMUSG00000025255,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17297,cg16518996,-0.0000188,0.0000053,-3.545108127,0.000452976,loss,ns,0.00000662,0.000009,0.736179275,0.462178293,pos,ns,0.001192021,0.002636043,0.452200665,0.651440686,pos,ns,0.186125121,-0.0000994,0.0000907,-1.096651085,0.273645107,neg,ns,0.934213112,Gm5356,Gm5356_Intergenic_upstream,8,89465279,89465328,89465327,89465328,50,+,TGTCAGATGATTATCTGAGAGCTTAATTTAATCTCCATTATCCTCCCCCG,Distal Intergenic,8,89186946,89187560,615,2,Gm5356-201,-277719,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,23,23,384862,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18135,cg12370200,-0.000113842,0.0000143,-7.976970129,2.92E-14,loss,yes,0.0000178,0.0000242,0.736139448,0.462202493,pos,ns,-0.015659887,0.007102963,-2.204697815,0.028209527,neg,ns,1.549604195,0.000100651,0.00024427,0.412048923,0.68058834,pos,ns,0.526334058,Gm12647,Gm12647_Intron,4,94189143,94189192,94189191,94189192,50,+,ATAAATTACTTAGAGAACACAGACTCACTTTACTTCTGTCAGGAAACTCG,"Intron (Gm12648-201/Gm12648-201, intron 2 of 5)",4,94061373,94061637,265,1,Gm12647-201,127770,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,3,100417559,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19377,cg06444943,-0.00000151,0.0000044,-0.343159714,0.731710904,loss,ns,-0.00000549,0.00000747,-0.735665859,0.462490311,neg,ns,-0.003666836,0.002187557,-1.676223772,0.094702529,neg,ns,1.023638422,0.000169734,0.0000752,2.256203672,0.024754394,pos,ns,0.906134402,Efnb1,Efnb1_Exon,X,99145326,99145375,99145374,99145375,50,-,AAAATTGGAGACAAGCTGGACATCATCTGCCCCCGAGCAGAAGCAGGGCG,"Exon (Efnb1-201/Efnb1, exon 2 of 5)",20,99136130,99148991,12862,1,Efnb1-201,9196,Efnb1-201;Efnb1-202,Efnb1;Efnb1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,14,13641,ENSMUSG00000031217,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27302,cg16966997,0.000103277,0.0000218,4.726875108,0.00000347,gain,ns,-0.0000273,0.0000371,-0.73553471,0.462570033,neg,ns,0.035118907,0.01087441,3.229499799,0.001373105,pos,ns,2.86229638,-0.001032393,0.00037397,-2.760630479,0.006112616,neg,ns,0.472471716,Hnf4a,Hnf4a_Intron,2,163555537,163555586,163555537,163555538,50,-,CGACCCTGCTAATACTGAGCAAACATTTGGAAAACATCATTCCGTGACTG,"Intron (Hnf4a-203/Hnf4a, intron 3 of 4)",2,163546817,163559110,12294,1,Hnf4a-203,8720,Hnf4a-205;Hnf4a-203;Hnf4a-202;Hnf4a-201;Hnf4a-204,Hnf4a;Hnf4a;Hnf4a;Hnf4a;Hnf4a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,6,15378,ENSMUSG00000017950,conserved gene and region,2,163555495,163555728,234,*,234,13,0.572649573,0.677807487,0.055555556,0.000000408,CpGisland,TRUE,NA,NRS
20933,cg09751476,-0.000000348,0.00000214,-0.162864724,0.870731061,loss,ns,0.00000267,0.00000363,0.735396121,0.462654286,pos,ns,0.001759661,0.00106344,1.65468753,0.098999955,pos,ns,1.004365004,-0.0000808,0.0000366,-2.208659895,0.027929652,neg,ns,0.950875526,Elp4,Elp4_Intron,2,105720231,105720280,105720279,105720280,50,+,TGTGTTTGTCCACCTAGGTATAAAATAGACATTATCGCAATATTGTATCG,"Intron (Elp4-202/Elp4, intron 9 of 9)",2,105701027,105904564,203538,2,Elp4-202,184284,Elp4-202,Elp4,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,16,77766,ENSMUSG00000027167,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16931,cg09207493,0.0000244,0.00000288,8.466677641,1.02E-15,gain,yes,-0.00000359,0.00000489,-0.735394896,0.462655032,neg,ns,0.002565763,0.001431471,1.792396414,0.074044468,pos,ns,1.130507384,-0.0000201,0.0000492,-0.408023749,0.683537902,neg,ns,0.067278215,Cbln1,Cbln1_Exon,8,87471724,87471773,87471724,87471725,50,-,CGTGGAAGTTAAAACTGTAGATCCCTTTGCGCGGGGCGATGAAAGTGCTG,Promoter (<=1kb),8,87468405,87472609,4205,2,Cbln1-201,836,Cbln1-201;Cbln1-203;Cbln1-202,Cbln1;Cbln1;Cbln1,0;-656;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,4,12404,ENSMUSG00000031654,conserved gene but different region,8,87471724,87471907,184,*,184,14,0.543478261,1.040808081,0.076086957,2.30E-09,CpGisland,TRUE,U13,Hc-P
16412,cg25655391,-0.00000332,0.00000143,-2.318521426,0.021071251,loss,ns,0.00000179,0.00000243,0.73526338,0.462734992,pos,ns,-0.000361375,0.000712452,-0.507226745,0.612356365,neg,ns,0.212995764,0.0000238,0.0000245,0.973385825,0.33112049,pos,ns,0.961556307,Arel1,Arel1_Exon,12,84941738,84941787,84941738,84941739,50,-,CGGAAGGCCATGCTGTGGCCCACCTCATAGGGGTCCTTCCAATCCCAGGA,"Exon (Arel1-202/Arel1, exon 4 of 19)",12,84918148,84970824,52677,2,Arel1-202,29037,Arel1-202;Arel1-201;Arel1-203;Arel1-208;Arel1-204;Arel1-206;Arel1-205,Arel1;Arel1;Arel1;Arel1;Arel1;Arel1;Arel1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,68497,ENSMUSG00000042350,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18311,cg24314234,0.000106153,0.0000113,9.400225358,1.25E-18,gain,yes,-0.0000141,0.0000192,-0.735217761,0.46276273,neg,ns,0.019411848,0.00562043,3.453801088,0.00062967,pos,ns,3.200887205,-0.000313868,0.000193286,-1.62385027,0.105424114,neg,ns,0.210604951,Gm48316,Gm48316_Intergenic_upstream,13,94708100,94708149,94708148,94708149,50,-,GGCTCCCTTCATGCACACATCTCCACTAATTTTACATTTCTCATTCTGCG,Distal Intergenic,13,94752270,94752593,324,1,Gm48316-201,-44170,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,36,42,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
3845,cg08605389,0.000000995,0.00000242,0.410651945,0.681611463,gain,ns,-0.00000303,0.00000412,-0.735179162,0.4627862,neg,ns,-0.000356012,0.001206249,-0.29513996,0.768084532,neg,ns,0.114590981,0.0000105,0.0000415,0.253668647,0.799919714,pos,ns,0.957668645,Dmrt1,Dmrt1_Intron,19,25568517,25568566,25568565,25568566,50,+,TTTATAGTAAATCCAGATTGCGATGTGACATTACAGTATATCATTGCCCG,"Intron (Dmrt1-201/Dmrt1, intron 4 of 4)",19,25505618,25604329,98712,1,Dmrt1-201,62899,Dmrt1-201;Dmrt1-202,Dmrt1;Dmrt1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,9,50796,ENSMUSG00000024837,conserved gene and region,19,25568478,25568596,119,*,119,10,0.529411765,1.202020202,0.084033613,0.000000335,CpGisland,TRUE,U11,Tr-P
12374,cg26948312,0.0000752,0.0000161,4.676006412,0.00000437,gain,ns,-0.0000201,0.0000273,-0.735058944,0.462859304,neg,ns,0.022883849,0.008001146,2.860071468,0.004522913,pos,ns,2.34458178,-0.000875296,0.000275159,-3.181059168,0.001615951,neg,ns,0.544228957,Fign,Fign_Intron,2,64070152,64070201,64070152,64070153,50,-,CGGGCAACTGATGAAATCTGTGGCCAAGGCGAAATAGCAATCTCTAAGCC,"Intron (Fign-203/Fign, intron 2 of 2)",2,63971507,64098012,126506,2,Fign-203,27811,Fign-203;Fign-201;Fign-202;Fign-204,Fign;Fign;Fign;Fign,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,84,60344,ENSMUSG00000075324,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
13117,cg03917189,-0.000000723,0.00000155,-0.466011092,0.641534824,loss,ns,0.00000194,0.00000263,0.735034985,0.462873874,pos,ns,-0.000875838,0.000771799,-1.134800819,0.257335463,neg,ns,0.589500361,0.0000169,0.0000265,0.635978491,0.525259681,pos,ns,0.970367923,Tcf4,Tcf4_Intron,18,69516558,69516607,69516558,69516559,50,+,CGATTAATGCTACCCTTATGCCTCTTTTGAGTAGTTTTAGCCATGGGGCT,"Intron (Tcf4-259/Tcf4, intron 5 of 6)",18,69343356,69564082,220727,1,Tcf4-259,173202,Tcf4-259;Tcf4-201;Tcf4-207;Tcf4-210;Tcf4-240;Tcf4-254;Tcf4-246;Tcf4-206;Tcf4-202;Tcf4-257;Tcf4-232;Tcf4-248;Tcf4-231;Tcf4-205;Tcf4-253;Tcf4-233;Tcf4-238;Tcf4-245;Tcf4-249;Tcf4-219;Tcf4-235;Tcf4-227;Tcf4-250;Tcf4-229;Tcf4-260;Tcf4-226;Tcf4-216;Tcf4-256;Tcf4-230;Tcf4-221;Tcf4-234;Tcf4-258;Tcf4-217;Tcf4-247;Tcf4-252;Tcf4-218;Tcf4-209;Tcf4-208,Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,42,66,21413,ENSMUSG00000053477,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12904,cg15205726,-0.000000447,0.00000235,-0.189849192,0.849551557,loss,ns,0.00000294,0.000004,0.7349069,0.462951769,pos,ns,-0.001725351,0.001171411,-1.472883176,0.141797122,neg,ns,0.848332585,0.0000635,0.0000403,1.576941405,0.115828896,pos,ns,0.966149878,Igf1r,Igf1r_Exon,7,68193548,68193597,68193548,68193549,50,+,CGATATCCACAGCTGCAACCACGAGGCTGAGAAGCTGGGCTGCAGCGCCT,"Exon (Igf1r-201/Igf1r, exon 11 of 21)",7,67952827,68233668,280842,1,Igf1r-201,240721,Igf1r-201;Igf1r-204,Igf1r;Igf1r,0;-1069,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,9,16001,ENSMUSG00000005533,conserved gene and region,7,68193525,68193736,212,*,212,15,0.594339623,0.803030303,0.070754717,1.49E-09,CpGisland,TRUE,U10,Tr-S
26758,cg07115282,0.0000033,0.00000147,2.243939512,0.025541845,gain,ns,0.00000183,0.00000249,0.734841429,0.462991589,pos,ns,0.001184025,0.000730894,1.619968088,0.106255908,pos,ns,0.973646912,-0.0000206,0.0000251,-0.820006718,0.412842314,neg,ns,0.03172155,Scrt2,Scrt2_fiveUTR,2,152081686,152081735,152081734,152081735,50,-,GGAACGTGTGCGGAGCGATTGTCCTGGGGGACATTTGATGGATTAGAGCG,Promoter (<=1kb),2,152081529,152095802,14274,1,Scrt2-201,157,Scrt2-201,Scrt2,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,10,545474,ENSMUSG00000060257,conserved gene but different region,2,152081644,152081735,92,*,92,8,0.641304348,0.851851852,0.086956522,0.00000628,CpGisland,TRUE,NA,NRS
9956,cg06462957,-0.0000107,0.00000415,-2.570318718,0.010627238,loss,ns,-0.00000518,0.00000705,-0.734779252,0.463029407,neg,ns,-0.002142251,0.002065314,-1.037251943,0.300426848,neg,ns,0.522261259,0.0000116,0.000071,0.164011078,0.869829304,pos,ns,0.945066717,Skap2,Skap2_Intergenic_downstream,6,51751039,51751088,51751039,51751040,50,-,CGTATTGAATGCTGGTTTGAATTAAATTCTATTTGTTTTAATAAAAGTGT,Distal Intergenic,6,51859104,51871929,12826,2,Skap2-207,120890,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,19,54353,ENSMUSG00000059182,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20287,cg03756692,0.000123872,0.0000111,11.17727322,1.35E-24,gain,yes,-0.0000138,0.0000188,-0.734689993,0.463083699,neg,ns,0.012148012,0.005515871,2.202374303,0.028374784,pos,ns,1.547067442,-0.000192184,0.00018969,-1.013147743,0.311779698,neg,ns,0.221821541,Hoxc5,Hoxc5_Exon,15,102984056,102984105,102984056,102984057,50,-,CGGCAGGTCAAAATCTGGTTTCAGAATCGAAGGATGAAGATGAAAAAGAT,"Exon (Hoxc9-201/Hoxc9, exon 3 of 3)",15,102967443,103015676,48234,1,Hoxc5-202,16613,Hoxc5-202;Hoxc9-202;Hoxc9-201,Hoxc5;Hoxc9;Hoxc9,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,72,134,15424,ENSMUSG00000022485,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
11121,cg05180417,-0.000179572,0.0000256,-7.007453266,1.52E-11,loss,yes,-0.000032,0.0000435,-0.73454903,0.463169449,neg,ns,0.007261975,0.012754279,0.569375591,0.569513601,pos,ns,0.244495899,-0.002405681,0.000438619,-5.484675988,8.61E-08,neg,yes,0.521323827,Gm13527,Gm13527_Intergenic_upstream,2,56662831,56662880,56662831,56662832,50,+,CGATAAAGTTAAGCCCTAGAAAATCTGCTGGTGTAGATCGGTGTGAAAAG,Distal Intergenic,2,57079748,57080438,691,1,Gm13527-201,-416868,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,13,13,227920,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13655,cg07980637,-0.0000119,0.0000174,-0.679930656,0.497055795,loss,ns,0.0000218,0.0000296,0.734418664,0.46324876,pos,ns,0.002445381,0.008678817,0.281764308,0.77831224,pos,ns,0.108846139,-0.00011941,0.000298464,-0.400081929,0.689371719,neg,ns,0.709646358,Wscd1,Wscd1_Intron,11,71763523,71763572,71763571,71763572,50,-,TTTTATTGATAGTAATTTCCAAAGACATTCCAATATCTTCAAAGCCGTCG,"Intron (Wscd1-201/Wscd1, intron 2 of 8)",11,71750685,71789647,38963,1,Wscd1-201,12838,Wscd1-206;Wscd1-201;Wscd1-203;Wscd1-205;Wscd1-202,Wscd1;Wscd1;Wscd1;Wscd1;Wscd1,13603;0;0;12147;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,216881,ENSMUSG00000020811,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19268,cg06515667,-0.00000599,0.00000382,-1.568984,0.117671793,loss,ns,-0.00000477,0.00000649,-0.734366839,0.463280291,neg,ns,0.001663276,0.00190157,0.874685734,0.382422071,pos,ns,0.417457051,-0.000082,0.0000654,-1.254225495,0.210704948,neg,ns,0.938291518,Gm18148,Gm18148_Exon,14,98888474,98888523,98888474,98888475,50,+,CGGCTGATGCTGCCAACAGAAGTGCCAATTAATGCCAATTACAATGGTGA,"Exon (Gm49018-201/Gm49018-201, exon 6 of 6)",14,98922654,98923527,874,1,Gm18148-201,-34131,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,9,100416529,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6325,cg22255679,0.0000182,0.00000904,2.013903107,0.04488337,gain,ns,0.0000113,0.0000154,0.734303977,0.463318539,pos,ns,0.003508905,0.004499758,0.779798603,0.436104374,pos,ns,0.360409558,-0.0000566,0.000154746,-0.365725054,0.714819681,neg,ns,0.638446665,Pknox2,Pknox2_threeUTR,9,36892812,36892861,36892860,36892861,50,+,CTGGGCTGCCCGACTACTCCAGGGAGTCACTGTGTTCCAAGCCCAGGTCG,3' UTR,9,36890982,37083309,192328,2,Pknox2-207,190448,Pknox2-207;Pknox2-201;Pknox2-202;Pknox2-203;Pknox2-206,Pknox2;Pknox2;Pknox2;Pknox2;Pknox2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,47,208076,ENSMUSG00000035934,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10448,cg25374009,0.0000707,0.0000193,3.657450169,0.00029921,gain,ns,-0.0000241,0.0000328,-0.734290575,0.463326693,neg,ns,0.033934382,0.009621419,3.526962199,0.000483883,pos,ns,3.315259584,-0.001013526,0.00033088,-3.063124642,0.002382532,neg,ns,0.533751163,Prdm6,Prdm6_Intron,18,53573128,53573177,53573128,53573129,50,+,CGTTAATGAATACACCAAAAATCATTAGGTGATCAATACTTCTGAGTTAT,"Intron (Prdm6-201/Prdm6, intron 6 of 6)",18,53464516,53575857,111342,1,Prdm6-201,108612,Prdm6-201;Prdm6-203;Prdm6-204;Prdm6-202,Prdm6;Prdm6;Prdm6;Prdm6,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,16,225518,ENSMUSG00000069378,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8733,cg19238028,0.0000613,0.0000141,4.347924549,0.0000187,gain,ns,-0.0000176,0.0000239,-0.734257706,0.463346694,neg,ns,-0.013621241,0.007016186,-1.941402356,0.05311544,neg,ns,1.274779219,0.000309602,0.000241286,1.283133754,0.200403652,pos,ns,0.713481168,Dscaml1,Dscaml1_Intron,9,45651662,45651711,45651710,45651711,50,-,ATCTTCCTCTCTCAGCAAATCCATTTAAATGCAATTCTATTCTTAAAGCG,"Intron (Dscaml1-202/Dscaml1, intron 4 of 7)",9,45426643,45672949,246307,1,Dscaml1-202,225019,Dscaml1-202;Dscaml1-211;Dscaml1-201;Dscaml1-210,Dscaml1;Dscaml1;Dscaml1;Dscaml1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,32,114873,ENSMUSG00000032087,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3606,cg08281622,0.0000664,0.0000124,5.336417225,0.000000183,gain,yes,-0.0000155,0.0000211,-0.734144532,0.46341556,neg,ns,0.012595042,0.006191434,2.034268728,0.042775465,pos,ns,1.36880526,-0.000452302,0.000212923,-2.12425322,0.034440254,neg,ns,0.300563853,Gm12067,Gm12067_Intron,11,24727622,24727671,24727622,24727623,50,-,CGTTTTGCAAACACACAAAATGGGTAATTGGGCACACAAATGCCTATTTG,"Intron (Gm10466-201/Gm10466-201, intron 1 of 2)",11,24552438,24553962,1525,2,Gm12067-201,-173709,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,58,100417843,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27620,cg26843878,0.0000344,0.0000179,1.918706391,0.05593963,gain,ns,-0.0000224,0.0000304,-0.73413117,0.463423691,neg,ns,-0.002162884,0.008919732,-0.242483125,0.808566179,neg,ns,0.092284429,0.000091,0.000306749,0.296776813,0.766835653,pos,ns,0.193668782,Kcnj9,Kcnj9_Exon,1,172326099,172326148,172326147,172326148,50,-,TGAAGGCGTTCACCATGGAGCCCAGGATGGCCTGCAGCAGCAGCAGCACG,"Exon (Kcnj9-201/Kcnj9, exon 3 of 4)",1,172320501,172329318,8818,2,Kcnj9-201,3170,Kcnj9-201;Kcnj9-202;Kcnj9-203,Kcnj9;Kcnj9;Kcnj9,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,6,16524,ENSMUSG00000038026,conserved gene and region,1,172326147,172326620,474,*,474,54,0.660337553,1.059875776,0.113924051,1.44E-44,CpGisland,TRUE,U3,Pr-B
17685,cg03600207,0.0000422,0.0000142,2.975758177,0.003152592,gain,ns,0.0000177,0.0000241,0.734091458,0.463447857,pos,ns,-0.015591152,0.007056543,-2.209460483,0.027873392,neg,ns,1.554810173,0.000833809,0.000242674,3.435924926,0.000671066,pos,ns,0.201238082,Zic4,Zic4_Exon,9,91379252,91379301,91379300,91379301,50,+,CGCCAGGGAAAGCCCTTCAAAGCCAAATACAAACTTGTAAATCACATCCG,"Exon (Zic4-207/Zic4, exon 3 of 3)",9,91368812,91379257,10446,1,Zic4-207,10440,Zic4-208;Zic4-207;Zic4-211;Zic4-204;Zic4-203;Zic4-210;Zic4-209;Zic4-205;Zic4-201;Zic4-202,Zic4;Zic4;Zic4;Zic4;Zic4;Zic4;Zic4;Zic4;Zic4;Zic4,0;0;0;0;0;8248;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,55,22774,ENSMUSG00000036972,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
16971,cg18734357,-0.0000348,0.00000871,-4.001011123,0.0000789,loss,ns,-0.0000109,0.0000148,-0.73408699,0.463450576,neg,ns,0.003631034,0.004333302,0.837937086,0.40271162,pos,ns,0.395005839,-0.000135123,0.000149022,-0.906730953,0.365253341,neg,ns,0.880616845,Zfp423,Zfp423_Intron,8,87737863,87737912,87737911,87737912,50,+,GTGCCCCAGAGAGTCTCCCTGTAATTTGTTCAAACGAAATAATATTTTCG,"Intron (Zfp423-203/Zfp423, intron 3 of 5)",8,87661810,87804439,142630,2,Zfp423-203,66527,Zfp423-203;Zfp423-202;Zfp423-201,Zfp423;Zfp423;Zfp423,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,42,53,94187,ENSMUSG00000045333,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20416,cg07300474,0.000038,0.00000616,6.167517303,2.16E-09,gain,yes,0.00000769,0.0000105,0.734027602,0.463486718,pos,ns,0.000628751,0.003068222,0.204923461,0.837766411,pos,ns,0.076877056,0.000148684,0.000105516,1.40911736,0.159802762,pos,ns,0.027017402,Hoxc4,Hoxc4_Exon,15,103034745,103034794,103034793,103034794,50,-,TGGACTCTAACTACATCGATCCGAAATTTCCTCCATGCGAAGAATATTCG,"Exon (Hoxc4-202/Hoxc4, exon 2 of 4)",15,103018934,103036405,17472,1,Hoxc4-202,15811,Hoxc4-202;Hoxc4-201,Hoxc4;Hoxc4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,91,15423,ENSMUSG00000075394,conserved gene and region,15,103034736,103035107,372,*,372,27,0.626344086,0.794494542,0.072580645,4.60E-17,CpGisland,TRUE,U3,Pr-B
14826,cg02142270,0.00000248,0.00000322,0.770364978,0.441670102,gain,ns,0.00000402,0.00000547,0.733794095,0.463628837,pos,ns,0.003413195,0.001603449,2.128658731,0.034070736,pos,ns,1.467618489,-0.000159993,0.0000551,-2.901447085,0.003980341,neg,ns,0.922319117,Fam172a,Fam172a_Intron,13,77891821,77891870,77891821,77891822,50,-,CGGAACTGTTGCACCAATAATGGAATCCAGATTGATCTGGGCTTGAAATG,"Intron (Fam172a-203/Fam172a, intron 6 of 10)",13,77708690,78163655,454966,1,Fam172a-203,183131,Fam172a-203;Fam172a-201;Fam172a-202;Fam172a-209;Fam172a-205;Fam172a-207;Fam172a-208,Fam172a;Fam172a;Fam172a;Fam172a;Fam172a;Fam172a;Fam172a,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,24,68675,ENSMUSG00000064138,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7814,cg14702498,0.0000139,0.0000026,5.356241208,0.000000166,gain,yes,0.00000324,0.00000441,0.733786586,0.463633408,pos,ns,0.003355809,0.001291835,2.597706503,0.009832783,pos,ns,2.007323562,-0.0000306,0.0000444,-0.688339968,0.491753489,neg,ns,0.087250146,Gm12455,Gm12455_Intergenic_downstream,4,44425476,44425525,44425476,44425477,50,+,CGGAGCAGGATTTATTAGCAGACAGGATGGGGAAGTTGATTAGCCTCCGC,Distal Intergenic,4,44382922,44383337,416,1,Gm12455-201,42554,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,15,15,,NA,mapped to different genes,4,44425181,44425477,297,*,297,35,0.744107744,0.859090909,0.117845118,1.26E-29,CpGisland,TRUE,U3,Pr-B
10473,cg20199880,-0.0000374,0.00001,-3.733038841,0.000225038,loss,ns,0.0000125,0.000017,0.733759772,0.463649729,pos,ns,0.012509778,0.004989429,2.507256444,0.012678459,pos,ns,1.896933516,-0.000403296,0.000171586,-2.350400274,0.019379717,neg,ns,0.179087587,Irf1,Irf1_Exon,11,53771307,53771356,53771307,53771308,50,-,CGCATGAGACCCTGGCTAGAGATGCAGATTAATTCCAACCAAATCCCGGG,"Exon (Irf1-202/Irf1, exon 2 of 10)",11,53770014,53777323,7310,1,Irf1-202,1293,Irf1-202;Irf1-208;Irf1-203;Irf1-205;Irf1-209;Irf1-207;Irf1-204;Irf1-201;Irf1-206;Irf1-210,Irf1;Irf1;Irf1;Irf1;Irf1;Irf1;Irf1;Irf1;Irf1;Irf1,0;0;0;0;0;0;0;0;0;-1797,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,16362,ENSMUSG00000018899,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
578,cg25400358,0.000068,0.0000077,8.826974741,8.05E-17,gain,yes,0.0000096,0.0000131,0.733759624,0.463649819,pos,ns,0.018501981,0.003833529,4.826357898,0.00000219,pos,ns,5.660323743,-0.000657678,0.000131835,-4.988656863,0.00000101,neg,yes,0.666791154,Gpr137,Gpr137_Exon,19,6940676,6940725,6940676,6940677,50,-,CGCTTGTGCCCATACAGAAGCACCAGCCAGAGCTGGGCATAGACGGAGAA,Promoter (<=1kb),19,6938057,6941193,3137,2,Gpr137-205,468,Bad-201;Bad-203;Bad-209;Bad-202;Bad-208;Bad-206;Bad-204;Gpr137-205;Gpr137-210;Gpr137-202;Gpr137-211;Gpr137-214;Gpr137-208;Gpr137-212;Gpr137-201;Gpr137-204;Gpr137-209;Gpr137-203;Gpr137-206;Gpr137-213;Gpr137-207,Bad;Bad;Bad;Bad;Bad;Bad;Bad;Gpr137;Gpr137;Gpr137;Gpr137;Gpr137;Gpr137;Gpr137;Gpr137;Gpr137;Gpr137;Gpr137;Gpr137;Gpr137;Gpr137,-1136;-1598;-1738;-1776;-1797;-1839;-2154;0;0;0;-680;-154;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,107173,ENSMUSG00000024958,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
21246,cg13902770,0.0000857,0.000013,6.592839899,1.86E-10,gain,yes,-0.0000162,0.0000221,-0.733751138,0.463654984,neg,ns,0.022933599,0.006469029,3.545137575,0.000452927,pos,ns,3.343971776,-0.000731927,0.000222469,-3.290010056,0.001117269,neg,ns,0.233424135,Ssbp3,Ssbp3_Intron,4,106956424,106956473,106956424,106956425,50,+,CGTAGCAACAGGCCTTCTAATCTGGTAGGTGACCTGAGAGACTGGAGAAG,"Intron (Ssbp3-216/Ssbp3, intron 4 of 8)",4,106910701,107031069,120369,1,Ssbp3-216,45723,Ssbp3-216;Ssbp3-201;Ssbp3-215;Ssbp3-202;Ssbp3-203;Ssbp3-207;Ssbp3-213;Ssbp3-214;Ssbp3-211;Ssbp3-212;Ssbp3-204,Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,18,72475,ENSMUSG00000061887,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18887,cg05314634,0.0000572,0.00000936,6.112945294,2.94E-09,gain,yes,-0.0000117,0.0000159,-0.733697164,0.46368784,neg,ns,0.012122354,0.004656121,2.603530643,0.009670857,pos,ns,2.014535039,-0.000160244,0.000160124,-1.000752334,0.317727066,neg,ns,0.368265117,Hdac7,Hdac7_Intron,15,97832378,97832427,97832426,97832427,50,-,TCCCCCAGTGCATTACAGCGGATCACAGAAATGTTCCAGTCTGTGAGTCG,"Intron (Hdac7-203/Hdac7, intron 1 of 23)",15,97792666,97844502,51837,2,Hdac7-203,12075,Hdac7-201;Hdac7-203;Hdac7-202;Hdac7-206;Hdac7-204;Hdac7-205;Hdac7-207;Hdac7-213;Hdac7-212,Hdac7;Hdac7;Hdac7;Hdac7;Hdac7;Hdac7;Hdac7;Hdac7;Hdac7,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,6,56233,ENSMUSG00000022475,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22327,cg18842854,-0.0000379,0.00000913,-4.153855993,0.0000423,loss,ns,-0.0000114,0.0000155,-0.733655509,0.463713196,neg,ns,-0.009683489,0.004541709,-2.132124384,0.033782448,neg,ns,1.471308888,0.0000343,0.000156189,0.219699358,0.826249901,pos,ns,0.847387195,Gzmk,Gzmk_Intergenic_upstream,13,113245214,113245263,113245262,113245263,50,+,TAACAGGAAACTGTTGGTGAGAAATACCCTGACGTTCCTGTAAATTCACG,Distal Intergenic,13,113171608,113225908,54301,2,Gzmk-202,-19306,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,2,14945,ENSMUSG00000042385,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26628,cg08948649,0.000000761,0.00000192,0.395555571,0.69270499,gain,ns,0.0000024,0.00000327,0.733506075,0.463804168,pos,ns,0.003081077,0.000957518,3.217774558,0.001428569,pos,ns,2.845098837,-0.0000687,0.0000329,-2.085501861,0.037841391,neg,ns,0.948136749,Pex14,Pex14_Intron,4,149044350,149044399,149044398,149044399,50,-,ATTTCTTTAAATACATTAATCAGCCTAGTGTAGGCAAAACGGATCCATCG,"Intron (Pex14-201/Pex14, intron 2 of 8)",4,148960535,149099876,139342,2,Pex14-201,55477,Pex14-201;Pex14-202;Pex14-205;Pex14-203;Pex14-204,Pex14;Pex14;Pex14;Pex14;Pex14,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,41,48,56273,ENSMUSG00000028975,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12115,cg14992835,-0.00000443,0.00000236,-1.875399824,0.061677543,loss,ns,0.00000294,0.00000401,0.73349282,0.463812238,pos,ns,0.00112847,0.001175989,0.95959216,0.338008337,pos,ns,0.471072587,-0.0000275,0.0000404,-0.680619307,0.496620434,neg,ns,0.924476981,Rufy2,Rufy2_threeUTR,10,63004629,63004678,63004677,63004678,50,-,TACCCAAAGTTGATTTGAATTACACCAGATTGCAGCAAGCAGAGAAGGCG,3' UTR,10,62980242,63013955,33714,1,Rufy2-202,24387,Rufy2-204;Rufy2-202;Rufy2-205;Rufy2-203;Rufy2-201;Rufy2-206,Rufy2;Rufy2;Rufy2;Rufy2;Rufy2;Rufy2,24390;0;0;24367;24336;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,TRUE,FALSE,threeUTR,1,1,70432,ENSMUSG00000020070,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15784,cg03774415,-0.000000388,0.000000363,-1.067380165,0.286630719,loss,ns,-0.000000453,0.000000617,-0.733396174,0.46387108,neg,ns,-0.000472259,0.000180881,-2.610886978,0.009469748,neg,ns,2.023661561,0.00000621,0.00000622,0.997674169,0.319215489,pos,ns,0.992189054,Tet3,Tet3_Exon,6,83404496,83404545,83404496,83404497,50,-,CGACTCATCTCACGGTTGAAGGTTTCATAGAGCCGGGTGCTAAGGGCCCC,"Exon (Tet3-202/Tet3, exon 3 of 11)",6,83362373,83441675,79303,2,Tet3-202,37130,Tet3-202;Tet3-203;Tet3-201;Tet3-204,Tet3;Tet3;Tet3;Tet3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,8,194388,ENSMUSG00000034832,conserved gene and region,6,83404426,83404724,299,*,299,21,0.648829431,0.669902913,0.070234114,4.14E-13,CpGisland,TRUE,U10,Tr-S
15634,cg07624582,0.0000193,0.0000109,1.779525216,0.076133314,gain,ns,-0.0000135,0.0000185,-0.733395151,0.463871703,neg,ns,0.016326723,0.005410998,3.017322149,0.002761545,pos,ns,2.55884791,-0.000635385,0.000186084,-3.414510292,0.000724001,neg,ns,0.165284661,Nfib,Nfib_Intron,4,82464490,82464539,82464538,82464539,50,+,CTGGGCCAGCTCCAATAACAACATCTGCTTGGCAGCTTTTCAAGCCCACG,"Intron (Nfib-201/Nfib, intron 2 of 11)",4,82290173,82505308,215136,2,Nfib-201,40769,Nfib-201;Nfib-203;Nfib-202;Nfib-205;Nfib-206;Nfib-204;Nfib-207;Nfib-209;Nfib-210,Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,66,18028,ENSMUSG00000008575,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15582,cg05772542,-0.00000927,0.0000045,-2.061847016,0.040055546,loss,ns,-0.0000056,0.00000764,-0.733381481,0.463880026,neg,ns,-0.0016477,0.002237884,-0.736276043,0.462119498,neg,ns,0.335245707,0.0000263,0.000077,0.341514625,0.732947573,pos,ns,0.929228279,Gm11411,Gm11411_Intergenic_downstream,4,81937540,81937589,81937588,81937589,50,+,TCATTGAGATTCACTGCCAGGTGGACAGCTTTGATGGCAAGGAGGTGGCG,Distal Intergenic,4,81696441,81697159,719,1,Gm11411-201,241099,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,6,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2428,cg14603973,-0.00000138,0.00000284,-0.486001604,0.627309381,loss,ns,-0.00000354,0.00000483,-0.733350028,0.463899177,neg,ns,-0.001421902,0.001415697,-1.004383174,0.315977287,neg,ns,0.500344134,-0.0000367,0.0000487,-0.754397455,0.451183277,neg,ns,0.902023432,Mark4,Mark4_threeUTR,7,19426173,19426222,19426221,19426222,50,-,GGGGCAGCTGGCAGACCTCCACTTCGAAGTGGGACAGGGGCTCGGGCCCG,3' UTR,7,19424775,19458821,34047,2,Mark4-201,32599,Ckm-203;Ckm-201;Mark4-201;Mark4-206;Mark4-202;Mark4-205;Mark4-203,Ckm;Ckm;Mark4;Mark4;Mark4;Mark4;Mark4,15148;15110;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,2,232944,ENSMUSG00000030397,conserved gene and region,7,19426031,19426388,358,*,358,33,0.720670391,0.737637363,0.092178771,3.57E-24,CpGisland,TRUE,U10,Tr-S
4382,cg01309159,0.00000387,0.0000016,2.419393955,0.016121632,gain,ns,-0.00000199,0.00000272,-0.733206526,0.463986557,neg,ns,-0.000714012,0.000795882,-0.897132352,0.370344477,neg,ns,0.431394128,-0.00000376,0.0000274,-0.137405776,0.890799266,neg,ns,0.962497861,Tnik,Tnik_threeUTR,3,28666142,28666191,28666142,28666143,50,-,CGGTCAGTGGAAACAGGACATTTGGATGGAGTATTTATGCATAAGCGAGC,3' UTR,3,28263214,28670585,407372,1,Tnik-207,402928,Tnik-207;Tnik-201;Tnik-212;Tnik-203;Tnik-205;Tnik-202;Tnik-206;Tnik-211;Tnik-214;Tnik-215;Tnik-204;Tnik-216,Tnik;Tnik;Tnik;Tnik;Tnik;Tnik;Tnik;Tnik;Tnik;Tnik;Tnik;Tnik,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,threeUTR,8,15,665113,ENSMUSG00000027692,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27490,cg11613830,0.00000992,0.00000271,3.657798671,0.00029882,gain,ns,-0.00000338,0.00000461,-0.733184951,0.463999695,neg,ns,0.003087143,0.001350117,2.286574327,0.022894706,pos,ns,1.640264937,-0.0000889,0.0000464,-1.915080134,0.056402308,neg,ns,0.055426325,Pbx1,Pbx1_Exon,1,168431453,168431502,168431453,168431454,50,-,CGGCCATCCCGACCCCAGCATGGGAATGCATCAGCCTGGGCTGCTCGTCC,Promoter (<=1kb),1,168119364,168432270,312907,2,Pbx1-208,768,Pbx1-208;Pbx1-205;Pbx1-206;Pbx1-201;Pbx1-202;Pbx1-204;Pbx1-207,Pbx1;Pbx1;Pbx1;Pbx1;Pbx1;Pbx1;Pbx1,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,84,18514,ENSMUSG00000052534,conserved gene and region,1,168431375,168431571,197,*,197,17,0.700507614,0.733625411,0.086294416,3.50E-12,CpGisland,TRUE,U1,Pr-A
27461,cg03834148,-0.0000134,0.00000624,-2.141411801,0.033020194,loss,ns,-0.00000778,0.0000106,-0.733075646,0.46406626,neg,ns,-0.005202181,0.003107717,-1.673955978,0.095147856,neg,ns,1.021600993,-0.0000393,0.000106874,-0.368058615,0.713080716,neg,ns,0.797773353,Pbx1,Pbx1_Intron,1,168288497,168288546,168288545,168288546,50,-,GCCACACAGAGAAGATAGCCGCTGACGGACACTTCATTTTAATTGTAACG,"Intron (Pbx1-208/Pbx1, intron 2 of 7)",1,168119364,168432270,312907,2,Pbx1-208,143724,Pbx1-208;Pbx1-205;Pbx1-206;Pbx1-201;Pbx1-202;Pbx1-204,Pbx1;Pbx1;Pbx1;Pbx1;Pbx1;Pbx1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,84,18514,ENSMUSG00000052534,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
20767,cg06813783,-0.0000191,0.0000108,-1.765389894,0.07848271,loss,ns,0.0000135,0.0000184,0.732906378,0.464169351,pos,ns,0.002664316,0.005382106,0.495032257,0.620928031,pos,ns,0.206958734,-0.000218534,0.00018509,-1.180688772,0.238631484,neg,ns,0.687280377,Gm5671,Gm5671_Intergenic_downstream,14,105085009,105085058,105085009,105085010,50,-,CGAGCAAATCAAATTTTTCACAATTAGTTGAACAACAACTGTGACAGGTT,Distal Intergenic,14,105043450,105044354,905,1,Gm5671-201,41608,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,12,435420,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21077,cg20719273,0.0000673,0.00000921,7.307159495,2.33E-12,gain,yes,0.0000115,0.0000157,0.732745863,0.464267123,pos,ns,0.013674019,0.004584966,2.982359618,0.003087273,pos,ns,2.510424921,-0.000056,0.000157677,-0.355199212,0.722681902,neg,ns,0.502687097,Prr29,Prr29_fiveUTR,11,106365599,106365648,106365599,106365600,50,-,CGCTGATGTCACAGGGTCATGAGTGAAACCTGAGGACTGGGCCAATCTTC,Promoter (<=1kb),11,106365472,106377114,11643,1,Prr29-201,127,Prr29-201,Prr29,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,2,75573,ENSMUSG00000009210,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23941,cg13077100,-0.00000598,0.00000628,-0.952015676,0.341830709,loss,ns,0.00000782,0.0000107,0.732718061,0.464284059,pos,ns,-0.003060541,0.003126573,-0.978880332,0.3284024,neg,ns,0.483593677,-0.0000446,0.000107523,-0.415232323,0.678259082,neg,ns,0.894358088,Insig2,Insig2_Intergenic_downstream,1,121237649,121237698,121237697,121237698,50,-,GCAAAGGGAAGCAACTCACATTAATCTACATTAAACTTAATAGCAGTCCG,Distal Intergenic,1,121305893,121307318,1426,2,Insig2-206,69669,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,17,72999,ENSMUSG00000003721,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16929,cg21120063,0.0000312,0.00000875,3.568878469,0.000415284,gain,ns,0.0000109,0.0000149,0.732713178,0.464287033,pos,ns,0.015559754,0.004357442,3.57084562,0.0004123,pos,ns,3.384786211,-0.00038409,0.000149852,-2.56312911,0.01084508,neg,ns,0.607345132,Snorc,Snorc_Promoter,1,87470205,87470254,87470205,87470206,50,-,CGGGCACGATGTCCCAGGAGGACAGAGTTTGCATTGATGAAAACCCTTCC,Promoter (<=1kb),1,87470271,87475482,5212,1,Snorc-201,-66,Snorc-201;Snorc-202,Snorc;Snorc,-17;-2285,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,2,73234,ENSMUSG00000026258,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26725,cg07121495,0.0000109,0.00000476,2.291654362,0.022595846,gain,ns,-0.00000593,0.00000809,-0.732699587,0.464295313,neg,ns,-0.004051232,0.002369471,-1.709762215,0.0883105,neg,ns,1.053987658,0.0000525,0.0000815,0.644333165,0.519835881,pos,ns,0.67021165,Huwe1,Huwe1_Exon,X,151905406,151905455,151905406,151905407,50,+,CGGATCTGGGAACAGTACAATTATAGGTGAGAGCCCCAGAACTGAGTATA,"Exon (Huwe1-201/Huwe1, exon 51 of 83)",20,151803327,151935417,132091,1,Huwe1-201,102079,Huwe1-201;Huwe1-202;Huwe1-219;Huwe1-208;Huwe1-215,Huwe1;Huwe1;Huwe1;Huwe1;Huwe1,0;0;0;-3390;-3390,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,22,28,59026,ENSMUSG00000025261,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25989,cg11534937,-0.00000053,0.000000901,-0.588835897,0.556400172,loss,ns,-0.00000112,0.00000153,-0.732691899,0.464299996,neg,ns,0.0000213,0.000448207,0.04744453,0.96218949,pos,ns,0.016739391,-0.00000741,0.0000154,-0.48065316,0.631102056,neg,ns,0.019062558,Tnrc18,Tnrc18_Promoter,5,142817898,142817947,142817946,142817947,50,-,CTCCCCTCGGCGGGGCTGAATGATCAAAACTGGTGGTGAGAATTTTTCCG,Promoter (<=1kb),5,142754789,142817662,62874,2,Tnrc18-201,-285,Tnrc18-201;Tnrc18-205,Tnrc18;Tnrc18,0;-518,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,7,231861,ENSMUSG00000039477,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8340,cg22406308,-0.0000258,0.0000172,-1.495230435,0.135871579,loss,ns,-0.0000215,0.0000293,-0.732643691,0.464329364,neg,ns,-0.007922366,0.008578007,-0.923567199,0.356429996,neg,ns,0.448025755,0.0000113,0.000294997,0.038474077,0.969334465,pos,ns,0.80294823,Zeb2,Zeb2_Intron,2,45032309,45032358,45032309,45032310,50,+,CGGCCTGGTGCGTCCTCTCAGCCTCGACACGCGTCAAGTAAAAGAAAGGT,"Intron (Zeb2-212/Zeb2, intron 3 of 10)",2,44983632,45117395,133764,2,Zeb2-212,85037,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-218;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1462,cg24505211,-0.00000889,0.00000886,-1.003174495,0.316559068,loss,ns,0.000011,0.0000151,0.732494359,0.464420341,pos,ns,-0.005456442,0.004410165,-1.237242084,0.216933591,neg,ns,0.663673194,0.00000998,0.000151665,0.065809283,0.947572085,pos,ns,0.72834861,Usp9x,Usp9x_fiveUTR,X,13094029,13094078,13094077,13094078,50,+,TCAAGACAACTACATAAGCAGACAAAATTGCAAAGATCTGCCCTGTGTCG,5' UTR,20,13071498,13123449,51952,1,Usp9x-206,22531,Usp9x-206;Usp9x-204;Usp9x-201,Usp9x;Usp9x;Usp9x,0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,10,22284,ENSMUSG00000031010,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2579,cg26112867,0.000014,0.000006,2.336852989,0.020083415,gain,ns,0.00000747,0.0000102,0.731940996,0.464757553,pos,ns,0.008259116,0.002988344,2.763777316,0.006055407,pos,ns,2.217856645,-0.000124295,0.000102769,-1.209464599,0.227405957,neg,ns,0.924306266,Rbm10,Rbm10_Exon,X,20641157,20641206,20641157,20641158,50,+,CGTCTGTATCTGAATGCTGTCTCCAGGTCAGAGCCGGGGCTTCGCCTTCG,"Exon (Rbm10-205/Rbm10, exon 6 of 24)",20,20617503,20650888,33386,1,Rbm10-205,23654,Rbm10-205;Rbm10-204;Rbm10-203;Rbm10-206;Rbm10-201;Rbm10-202;Rbm10-207,Rbm10;Rbm10;Rbm10;Rbm10;Rbm10;Rbm10;Rbm10,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,14,236732,ENSMUSG00000031060,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24826,cg06179749,-0.0000113,0.00000304,-3.708828409,0.000246663,loss,ns,0.00000379,0.00000517,0.731771665,0.464860769,pos,ns,-0.000795828,0.001515425,-0.525152062,0.599852868,neg,ns,0.22195526,0.0000559,0.0000521,1.073343033,0.283952027,pos,ns,0.92720046,Phc2,Phc2_Exon,4,128743495,128743544,128743543,128743544,50,+,CCCAAATCCTGACGCATGTTATCGAAGGGTTTGTGATCCAGGAGGGGGCG,"Exon (Phc2-201/Phc2, exon 10 of 15)",4,128654702,128752881,98180,1,Phc2-201,88793,Phc2-201;Phc2-203;Phc2-209;Phc2-202;Phc2-208;Phc2-205;Phc2-210;Phc2-204;Phc2-206,Phc2;Phc2;Phc2;Phc2;Phc2;Phc2;Phc2;Phc2;Phc2,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,13,54383,ENSMUSG00000028796,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10681,cg13804575,0.000144775,0.0000217,6.678820583,1.12E-10,gain,yes,-0.0000269,0.0000368,-0.731770526,0.464861463,neg,ns,-0.014196367,0.010788755,-1.315848551,0.189197117,neg,ns,0.723085485,0.000126573,0.000371024,0.341145632,0.733225053,pos,ns,0.63039093,Zfp462,Zfp462_Intron,4,54949685,54949734,54949685,54949686,50,+,CGTCTGGGATGGGGAAAGACCAACCAGTTGGGGCTTTCTCCCAGGGCTCC,"Intron (Zfp462-204/Zfp462, intron 1 of 2)",4,54945048,55008314,63267,1,Zfp462-204,4637,Zfp462-204;Zfp462-203,Zfp462;Zfp462,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,23,242466,ENSMUSG00000060206,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3909,cg05939552,-0.0000187,0.0000163,-1.14451353,0.25329364,loss,ns,0.0000203,0.0000278,0.731701413,0.464903594,pos,ns,-0.007340668,0.008132023,-0.902686529,0.367393143,neg,ns,0.434868953,0.000352269,0.00027966,1.25963321,0.208749228,pos,ns,0.699133137,Celf4,Celf4_Intron,18,25751855,25751904,25751903,25751904,50,-,GCTCTCTGGGACTCCAACTATGAAGAGTTTGGAGCTCTGTTTAGTATTCG,"Intron (Celf4-202/Celf4, intron 1 of 12)",18,25477632,25753983,276352,2,Celf4-202,2079,Celf4-202;Celf4-201;Celf4-203;Celf4-207;Celf4-206;Celf4-209;Celf4-205,Celf4;Celf4;Celf4;Celf4;Celf4;Celf4;Celf4,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,59,108013,ENSMUSG00000024268,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
27179,cg02958263,-0.0000124,0.00000465,-2.672984645,0.00791595,loss,ns,-0.00000578,0.0000079,-0.731637232,0.464942721,neg,ns,-0.008965538,0.002315053,-3.872713875,0.00013131,neg,ns,3.881703027,0.000248183,0.0000796,3.117315592,0.001996148,pos,ns,0.896243642,Rabgap1l,Rabgap1l_Exon,1,160351310,160351359,160351310,160351311,50,+,CGTCGTGCATGTCCTGGGACTTTTTGACAGGAGGTGTGAGCTTAGCAGCT,Promoter (<=1kb),1,160219174,160351571,132398,2,Rabgap1l-202,212,Rabgap1l-202;Rabgap1l-217;Rabgap1l-203;Rabgap1l-201,Rabgap1l;Rabgap1l;Rabgap1l;Rabgap1l,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,5,29809,ENSMUSG00000026721,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26239,cg13466988,0.0000794,0.0000173,4.577744236,0.00000681,gain,ns,-0.0000215,0.0000295,-0.731572454,0.464982214,neg,ns,0.020272737,0.008628708,2.349452167,0.019428251,pos,ns,1.71156629,-0.000647543,0.000296741,-2.182186047,0.029846259,neg,ns,0.226565497,Vps13d,Vps13d_Intron,4,145000021,145000070,145000021,145000022,50,+,CGGCAGTACAAGACTCGAGCTGTATTACACGCCTTAATGATATGGTTCAA,"Intron (Vps13d-202/Vps13d, intron 67 of 69)",4,144972622,145195005,222384,2,Vps13d-202,194935,Vps13d-202;Vps13d-203;Vps13d-201;Vps13d-210;Vps13d-205,Vps13d;Vps13d;Vps13d;Vps13d;Vps13d,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,10,230895,ENSMUSG00000020220,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9413,cg12415598,0.000136573,0.0000152,8.989377942,2.51E-17,gain,yes,-0.0000189,0.0000258,-0.731549005,0.46499651,neg,ns,0.026920642,0.007561582,3.560186475,0.000428712,pos,ns,3.367834809,-0.000822216,0.000260042,-3.161855121,0.001722781,neg,ns,0.215399187,Zbtb16,Zbtb16_Intron,9,48675251,48675300,48675251,48675252,50,-,CGGAGAGGTATGCAGCCCTCTGGTCTGTAACTTTCAAAATGACAGCAGGA,"Intron (Zbtb16-201/Zbtb16, intron 4 of 6)",9,48654297,48835945,181649,2,Zbtb16-201,160645,Zbtb16-201;Zbtb16-202,Zbtb16;Zbtb16,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,37,235320,ENSMUSG00000066687,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19126,cg01998099,-0.0000005,0.00000231,-0.216243877,0.828939878,loss,ns,0.00000288,0.00000393,0.731520459,0.465013914,pos,ns,0.002301688,0.001151898,1.998169645,0.046571516,pos,ns,1.331879626,-0.0000683,0.0000396,-1.725038581,0.085517175,neg,ns,0.950883491,Ccnt1,Ccnt1_Exon,15,98546772,98546821,98546772,98546773,50,-,CGTCAACATACTCCCACCAGTGCTTCCCGTCAGTTGAGACTGGGATCTCC,"Exon (Ccnt1-208/Ccnt1, exon 8 of 10)",15,98538689,98570923,32235,2,Ccnt1-208,24102,Ccnt1-208;Ccnt1-203;Ccnt1-201;Ccnt1-206;Ccnt1-209;Ccnt1-207;Ccnt1-204;Ccnt1-205,Ccnt1;Ccnt1;Ccnt1;Ccnt1;Ccnt1;Ccnt1;Ccnt1;Ccnt1,0;-3752;0;0;0;0;0;20724,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,12455,ENSMUSG00000011960,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5289,cg16925918,-0.000000677,0.00000142,-0.476769794,0.633861956,loss,ns,-0.00000176,0.00000241,-0.731400338,0.465087155,neg,ns,0.000277957,0.000706705,0.393313311,0.694358443,pos,ns,0.158416279,0.0000176,0.0000243,0.72390363,0.469670821,pos,ns,0.954144308,Rngtt,Rngtt_Exon,4,33329546,33329595,33329546,33329547,50,+,CGCACTGGTTTCCTCATATGTGCCTTTTTGGTGGAGAAAATGGATTGGAG,"Exon (Rngtt-202/Rngtt, exon 5 of 16)",4,33310311,33502614,192304,1,Rngtt-202,19235,Rngtt-202;Rngtt-201;Rngtt-203;Rngtt-205;Rngtt-204,Rngtt;Rngtt;Rngtt;Rngtt;Rngtt,0;0;7310;0;-1419,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,24018,ENSMUSG00000028274,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15006,cg18010822,0.0000726,0.0000131,5.563033247,5.74E-08,gain,yes,0.0000162,0.0000222,0.731348459,0.46511879,pos,ns,0.018803607,0.006495412,2.894905911,0.004061963,pos,ns,2.391264069,-0.000303126,0.000223377,-1.357019313,0.175762311,neg,ns,0.092499394,Pou4f2,Pou4f2_Exon,8,78436063,78436112,78436111,78436112,50,-,GGGCTGTCAAAATGTGCCTTTAAGCGGTGATTATGCAGAAATACGCACCG,Promoter (<=1kb),8,78433010,78436645,3636,2,Pou4f2-201,533,Pou4f2-201,Pou4f2,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,23,18997,ENSMUSG00000031688,conserved gene and region,8,78436087,78436373,287,*,287,35,0.724738676,0.929490145,0.12195122,3.29E-30,CpGisland,TRUE,NA,NRS
26055,cg05432333,-0.0000233,0.00000738,-3.150628244,0.001788221,loss,ns,0.00000917,0.0000125,0.731333311,0.465128026,pos,ns,-0.000642348,0.003673809,-0.174845324,0.861315312,neg,ns,0.064837832,-0.0000809,0.000126342,-0.64040913,0.522379719,neg,ns,0.868753068,Gm2505,Gm2505_Intergenic_upstream,3,143451838,143451887,143451838,143451839,50,+,CGGTTTAAATTAACAGGTAATTTGTAAATGTCACTTCAGGTTAGGCCGCT,Distal Intergenic,3,143872995,143873819,825,1,Gm2505-201,-421108,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,37,100039938,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24264,cg02811472,-0.0000173,0.00000601,-2.876155536,0.004304464,loss,ns,-0.00000747,0.0000102,-0.731227334,0.465192652,neg,ns,-0.003570896,0.002991212,-1.193795592,0.233470667,neg,ns,0.631767677,-0.000037,0.000102868,-0.359790841,0.719248533,neg,ns,0.896485354,Pou3f1,Pou3f1_Intergenic_upstream,4,124402285,124402334,124402333,124402334,50,-,TCTAGTGCATCATTGTATCTCTATTAAAAGGGATTCTCTGTAATGATGCG,Distal Intergenic,4,124656807,124660655,3849,1,Pou3f1-201,-254522,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,24,85,18991,ENSMUSG00000090125,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1851,cg14248928,0.00000252,0.00000629,0.400737186,0.688889678,gain,ns,0.00000782,0.0000107,0.731165933,0.465230097,pos,ns,-0.009308417,0.003132066,-2.971972866,0.003190615,neg,ns,2.496125587,0.000377351,0.000107712,3.503345761,0.000527073,pos,ns,0.877819882,Psat1,Psat1_Intergenic_downstream,19,15589289,15589338,15589337,15589338,50,+,TTCAAAGTTATATGGCACTTTTCATCTAAGAATATCAGAGCACTCTGCCG,Distal Intergenic,19,15905130,15909712,4583,2,Psat1-204,320374,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,14,17,107272,ENSMUSG00000024640,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5792,cg20715028,7.35E-10,0.00000222,0.000330549,0.999736473,gain,ns,-0.00000276,0.00000378,-0.731063654,0.465292475,neg,ns,0.000486608,0.001107179,0.439502279,0.660603847,pos,ns,0.180058901,-0.0000454,0.0000381,-1.191261533,0.234462203,neg,ns,0.921322313,Kdm3b,Kdm3b_Exon,18,34803541,34803590,34803541,34803542,50,-,CGGACTCTGGGTGTGACCCTGCATCAAAGAAATTAAAAGGAGACAGGGGT,"Exon (Kdm3b-201/Kdm3b, exon 7 of 24)",18,34777047,34838660,61614,1,Kdm3b-201,26494,Kdm3b-201;Kdm3b-206;Kdm3b-204;Kdm3b-205;Kdm3b-207,Kdm3b;Kdm3b;Kdm3b;Kdm3b;Kdm3b,0;0;0;26436;6646,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,Exon,5,6,277250,ENSMUSG00000038773,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8452,cg21541884,-0.00000132,0.00000161,-0.817349484,0.414356461,loss,ns,-0.000002,0.00000274,-0.731037874,0.465308198,neg,ns,0.000552655,0.000801737,0.689321605,0.491136534,pos,ns,0.308797759,0.0000127,0.0000276,0.462071886,0.644353884,pos,ns,0.03742339,Tlx1,Tlx1_Intron,19,45155359,45155408,45155407,45155408,50,+,GTCCACCTTAGAGACAGACGTTTGATCTCAGTTGACAGGGTGGAGGGGCG,"Intron (Tlx1-201/Tlx1, intron 2 of 2)",19,45150680,45156943,6264,1,Tlx1-201,4679,Tlx1-201;Tlx1-202,Tlx1;Tlx1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,7,21908,ENSMUSG00000025215,conserved gene and region,19,45155244,45155472,229,*,229,14,0.580786026,0.73196347,0.061135371,3.89E-08,CpGisland,TRUE,U13,Hc-P
9066,cg22627187,0.00000856,0.00000217,3.945960662,0.0000984,gain,ns,-0.00000269,0.00000369,-0.730930855,0.465373473,neg,ns,0.004441571,0.001079661,4.113858487,0.0000499,pos,ns,4.301826155,-0.00016193,0.0000371,-4.361231417,0.0000176,neg,ns,0.082024347,Cnnm2,Cnnm2_Exon,19,46762560,46762609,46762560,46762561,50,+,CGCTGCTGCTGTGCCTGTCGGGCATGTTCAGCGGCCTCAACCTGGGGCTC,Promoter (<=1kb),19,46761596,46880192,118597,1,Cnnm2-202,964,Cnnm2-202;Cnnm2-201;Cnnm2-203,Cnnm2;Cnnm2;Cnnm2,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,8,94219,ENSMUSG00000064105,conserved gene and region,19,46762560,46762882,323,*,323,24,0.622291022,0.767524753,0.074303406,1.81E-15,CpGisland,TRUE,U4,Pr-F
23793,cg15099692,0.0000961,0.0000162,5.93063315,8.05E-09,gain,yes,-0.0000201,0.0000275,-0.730890542,0.465398063,neg,ns,0.02387469,0.008066867,2.959598856,0.003317859,pos,ns,2.47914203,-0.000524216,0.000277419,-1.889618201,0.059741963,neg,ns,0.431426852,Mbnl2,Mbnl2_Intron,14,120395609,120395658,120395657,120395658,50,+,GCCGTTCCCATGATGCACCTCTGCTTGCTGTTTACCTGTATGTTAATTCG,"Intron (Mbnl2-201/Mbnl2, intron 5 of 8)",14,120275669,120431697,156029,1,Mbnl2-201,119940,Mbnl2-201;Mbnl2-204;Mbnl2-206;Mbnl2-202;Mbnl2-203;Mbnl2-208;Mbnl2-210;Mbnl2-205,Mbnl2;Mbnl2;Mbnl2;Mbnl2;Mbnl2;Mbnl2;Mbnl2;Mbnl2,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,16,105559,ENSMUSG00000022139,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24057,cg00189226,0.000000931,0.00000491,0.189531441,0.849800351,gain,ns,-0.0000061,0.00000835,-0.730869044,0.465411176,neg,ns,0.000477804,0.002446084,0.195334177,0.845259308,pos,ns,0.073010038,-0.0000631,0.0000841,-0.749742107,0.453978635,neg,ns,0.914101104,Clybl,Clybl_Intron,14,122367256,122367305,122367256,122367257,50,-,CGACAGTAGAATTGATGCCGCTCTAATCCCTGGAAGTTTGGAACTAATGA,"Intron (Clybl-201/Clybl, intron 2 of 7)",14,122181704,122402234,220531,1,Clybl-201,185552,Clybl-201;Clybl-202,Clybl;Clybl,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,13,69634,ENSMUSG00000025545,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8800,cg19619227,-0.0000118,0.00000288,-4.106988956,0.0000513,loss,ns,-0.00000357,0.00000489,-0.730777848,0.465466807,neg,ns,-0.00491645,0.001431221,-3.435142404,0.000672935,neg,ns,3.172026955,0.0000201,0.0000492,0.40878988,0.682976122,pos,ns,0.922523181,Oga,Oga_fiveUTR,19,45762250,45762299,45762298,45762299,50,-,CTGAAGAATGACTACGACACCCTGTTGAGATCAGATCCAAGCGGAGAACG,5' UTR,19,45750259,45783551,33293,2,Oga-201,21252,Oga-201;Oga-204;Oga-203;Oga-206,Oga;Oga;Oga;Oga,0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,21,76055,ENSMUSG00000025220,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22803,cg12292323,-0.00000329,0.00000152,-2.166764452,0.031014286,loss,ns,0.00000188,0.00000258,0.73077519,0.465468428,pos,ns,-0.000298181,0.000754852,-0.395019197,0.693100381,neg,ns,0.159203862,0.0000415,0.000026,1.598556167,0.110937963,pos,ns,0.048919314,Dmbx1,Dmbx1_Intergenic_upstream,4,115963211,115963260,115963211,115963212,50,-,CGCCAGATTGTTCCCTTCATAATTGATTGACTCTATTTGCCGGATTGGGA,Distal Intergenic,4,115915119,115939926,24808,2,Dmbx1-203,-23334,Faah-202,Faah,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,15,42,140477,ENSMUSG00000028707,mapped to different genes,4,115962737,115963443,707,*,707,80,0.684582744,0.96711865,0.113154173,1.72E-65,CpGisland,TRUE,U3,Pr-B
12698,cg17162474,-0.0000485,0.000013,-3.71768745,0.000238532,loss,ns,0.0000162,0.0000222,0.730606534,0.46557132,pos,ns,-0.003773105,0.006490502,-0.581327236,0.561442361,neg,ns,0.250694823,0.0000461,0.000223208,0.206574449,0.836477828,pos,ns,0.696637823,Gm6555,Gm6555_Intergenic_upstream,3,66746904,66746953,66746952,66746953,50,+,CAAAAGGCCACCTGCTGCTAAGCTTCATTTTCCTGCAGTCGATATACACG,Distal Intergenic,3,66882350,66883138,789,1,Gm6555-201,-135397,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,10,625115,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10902,cg03583550,0.0000171,0.00000629,2.711930453,0.007062557,gain,ns,-0.00000781,0.0000107,-0.73056757,0.465595092,neg,ns,0.012164193,0.003131061,3.885007422,0.000125134,pos,ns,3.902626007,-0.000363187,0.000107677,-3.372929537,0.000838092,neg,ns,0.758165572,Tcf7l2,Tcf7l2_Intron,19,55765776,55765825,55765776,55765777,50,+,CGATGACAAATCTGCCTTGCTCCTGCCACTGGAGCAGAAAATGTAGCTTG,"Intron (Tcf7l2-213/Tcf7l2, intron 3 of 13)",19,55741820,55933229,191410,1,Tcf7l2-213,23956,Tcf7l2-213;Tcf7l2-201;Tcf7l2-208;Tcf7l2-211;Tcf7l2-212;Tcf7l2-206;Tcf7l2-204;Tcf7l2-205;Tcf7l2-222;Tcf7l2-215;Tcf7l2-214;Tcf7l2-207;Tcf7l2-202;Tcf7l2-209;Tcf7l2-210;Tcf7l2-217,Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,55,88,21416,ENSMUSG00000024985,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20163,cg08284867,-0.0000742,0.0000119,-6.208976581,1.71E-09,loss,yes,0.0000148,0.0000203,0.730431209,0.465678294,pos,ns,-0.008725093,0.005944973,-1.467642208,0.143215267,neg,ns,0.844010683,-0.000217877,0.000204447,-1.065686423,0.287394714,neg,ns,0.73121955,Gm49473,Gm49473_Intergenic_downstream,15,102777209,102777258,102777257,102777258,50,-,GATGATATTTAAAAAATGGTTCTGTAATTGCAATGAGGCCCTCTAGGCCG,Distal Intergenic,15,102795121,102795371,251,2,Gm49473-201,18162,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,12,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7381,cg25993001,0.0000105,0.00000448,2.343839338,0.019717767,gain,ns,0.00000556,0.00000762,0.730390839,0.465702927,pos,ns,0.002470623,0.002231809,1.107004792,0.269150103,pos,ns,0.57000545,-0.000143195,0.0000768,-1.8656911,0.06302896,neg,ns,0.919791939,R3hcc1l,R3hcc1l_Intergenic_upstream,19,42483949,42483998,42483949,42483950,50,+,CGATCAGGATATGCTGCCATCGATTAACTGTGAGAGGGGCCACTTGACTC,Distal Intergenic,19,42518759,42592343,73585,1,R3hcc1l-201,-34761,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,13,52013,ENSMUSG00000025184,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4577,cg01220605,0.0000055,0.0000012,4.569595346,0.00000707,gain,ns,0.00000149,0.00000205,0.730154745,0.465847005,pos,ns,-0.000645572,0.000599451,-1.076938609,0.282345048,neg,ns,0.549219825,0.0000685,0.0000206,3.323189155,0.000996537,pos,ns,0.98942664,Urm1,Urm1_Exon,2,29845666,29845715,29845714,29845715,50,+,TCGGTTGGCCGCAGACTCGTACAAGAATTGCGTTTGGACAATCAGTGGCG,"Exon (Mir219b-201/Mir219b-201, exon 1 of 1)",2,29841648,29844064,2417,1,Urm1-202,4018,Urm1-205;Urm1-206;Urm1-201;Urm1-204;Urm1-202,Urm1;Urm1;Urm1;Urm1;Urm1,25591;18324;18324;18305;4018,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,10,68205,ENSMUSG00000069020,mapped to different genes,2,29845571,29845950,380,*,380,29,0.62631579,0.7861882,0.07631579,6.66E-19,CpGisland,TRUE,U13,Hc-P
25960,cg16479224,-0.0000257,0.00000756,-3.392196635,0.000783288,loss,ns,0.00000938,0.0000128,0.730148165,0.465851021,pos,ns,0.005558671,0.003764403,1.476640691,0.140787071,pos,ns,0.851437227,-0.000347453,0.000129458,-2.68391774,0.007667468,neg,ns,0.817778233,Unc5c,Unc5c_threeUTR,3,141828819,141828868,141828867,141828868,50,-,GTTGGGCTGTATGCTGTGTGGTACAGGATCTTACAGTTTCCTAGGAAACG,3' UTR,3,141465216,141834924,369709,1,Unc5c-202,363603,Unc5c-202;Unc5c-201;Unc5c-204;Unc5c-205,Unc5c;Unc5c;Unc5c;Unc5c,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,4,22253,ENSMUSG00000059921,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15292,cg04441847,-0.0000164,0.000003,-5.474569936,9.07E-08,loss,yes,-0.00000372,0.00000509,-0.73013664,0.465858055,neg,ns,-0.001431687,0.001491867,-0.959661034,0.337973717,neg,ns,0.471117072,0.00010428,0.0000513,2.032545036,0.042950554,pos,ns,0.941010743,Srsf7,Srsf7_threeUTR,17,80204881,80204930,80204881,80204882,50,+,CGGCGATCACCGTCTCAAATTTTCTGCCCTTTAAAGAATAAGGTGAAGCT,3' UTR,17,80200080,80207305,7226,2,Srsf7-201,2375,Srsf7-201;Srsf7-202;Srsf7-203;Srsf7-205;Srsf7-206;Srsf7-207;Srsf7-208;Srsf7-204;Ttc39d-202,Srsf7;Srsf7;Srsf7;Srsf7;Srsf7;Srsf7;Srsf7;Srsf7;Ttc39d,0;0;0;0;0;0;0;0;-2530,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,7,8,225027,ENSMUSG00000024097,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19284,cg10626997,-0.00000014,0.000000326,-0.431114212,0.666684954,loss,ns,0.000000404,0.000000553,0.729934139,0.465981654,pos,ns,-0.000181889,0.000162078,-1.122235979,0.262630574,neg,ns,0.580654717,0.00000418,0.00000557,0.749742845,0.453978191,pos,ns,0.992019,Foxp1,Foxp1_threeUTR,6,98941008,98941057,98941008,98941009,50,-,CGTCAAAGTTTTCATCGGGGCAGTATTTGCGAGGACGGCCTCGTTGAATA,3' UTR,6,98925338,99266515,341178,2,Foxp1-206,325458,Foxp1-206;Foxp1-204;Foxp1-220;Foxp1-230;Foxp1-225;Foxp1-201;Foxp1-205;Foxp1-207;Foxp1-208;Foxp1-226;Foxp1-228;Foxp1-221;Foxp1-222;Foxp1-210,Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,9,87,108655,ENSMUSG00000030067,mapped to different genes,6,98940999,98941068,70,*,70,8,0.6,1.281464531,0.114285714,0.000000774,CpGisland,TRUE,U10,Tr-S
855,cg13102197,-0.0000309,0.00000784,-3.937235421,0.000101833,loss,ns,0.00000972,0.0000133,0.729914823,0.465993444,pos,ns,0.004360466,0.003902079,1.117472528,0.26465763,pos,ns,0.577315581,-0.000400162,0.000134192,-2.982009327,0.003090708,neg,ns,0.799218963,Ttc32,Ttc32_Intergenic_downstream,12,9128595,9128644,9128643,9128644,50,+,TCAAAACAGATTTCACAATCACTTTATCCAATTTTGGACGGCTTAATTCG,Distal Intergenic,12,9030028,9036397,6370,1,Ttc32-202,98567,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,4,75516,ENSMUSG00000066637,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4380,cg27365266,-0.0000151,0.0000064,-2.367189739,0.018537716,loss,ns,-0.00000793,0.0000109,-0.729893907,0.466006212,neg,ns,-0.001342439,0.003184166,-0.421598306,0.673610435,neg,ns,0.171591194,-0.0000623,0.000109503,-0.569353747,0.569528404,neg,ns,0.940576425,Tnik,Tnik_Exon,3,28665843,28665892,28665891,28665892,50,+,GGTTAACCATTCCTTATCTCCTTCAGCAGTTACACCCCCCAAATGAAACG,"Exon (Tnik-204/Tnik, exon 6 of 6)",3,28263214,28670585,407372,1,Tnik-207,402629,Tnik-207;Tnik-201;Tnik-212;Tnik-203;Tnik-205;Tnik-202;Tnik-206;Tnik-211;Tnik-214;Tnik-215;Tnik-204;Tnik-216,Tnik;Tnik;Tnik;Tnik;Tnik;Tnik;Tnik;Tnik;Tnik;Tnik;Tnik;Tnik,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,15,665113,ENSMUSG00000027692,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25493,cg17573879,-0.0000024,0.00000134,-1.792297573,0.074060327,loss,ns,-0.00000166,0.00000227,-0.729762427,0.466086474,neg,ns,-0.001842563,0.000666201,-2.765773791,0.006019364,neg,ns,2.220449424,0.0000462,0.0000229,2.015937116,0.044668961,pos,ns,0.963613032,Ppp3ca,Ppp3ca_Exon,3,136935043,136935092,136935091,136935092,50,-,TCACCACAACATAAGATCACTAGCTTCGAGGAAGCCAAGGGCTTAGACCG,"Exon (Ppp3ca-202/Ppp3ca, exon 13 of 13)",3,136670124,136937727,267604,1,Ppp3ca-202,264919,Ppp3ca-202;Ppp3ca-201,Ppp3ca;Ppp3ca,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,19055,ENSMUSG00000028161,conserved gene and region,3,136935069,136935189,121,*,121,9,0.578512397,0.9075,0.074380165,0.00000449,CpGisland,TRUE,NA,NRS
7707,cg18866404,-0.000024,0.00000474,-5.064080042,0.000000706,loss,yes,-0.00000587,0.00000805,-0.729609655,0.466179744,neg,ns,-0.007156962,0.00235902,-3.033870778,0.002618643,neg,ns,2.581923772,0.00000793,0.0000811,0.097697061,0.922235986,pos,ns,0.859745786,Nectin1,Nectin1_Exon,9,43803606,43803655,43803606,43803607,50,+,CGCCGGCACACCTTCAAGGGTGACTACAGCACCAAGAAGCACGTGTATGG,"Exon (Nectin1-201/Nectin1, exon 6 of 6)",9,43743984,43807461,63478,1,Nectin1-201,59622,Nectin1-201;Nectin1-205;Nectin1-203,Nectin1;Nectin1;Nectin1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,2,58235,ENSMUSG00000032012,conserved gene and region,9,43803487,43803913,427,*,427,30,0.639344262,0.700382723,0.070257611,1.76E-18,CpGisland,TRUE,U11,Tr-P
8619,cg04252879,-0.000000164,0.00000314,-0.052239414,0.958371574,loss,ns,-0.00000389,0.00000533,-0.729479148,0.466259429,neg,ns,0.001533897,0.001560782,0.982775124,0.326484509,pos,ns,0.486137421,-0.0000572,0.0000537,-1.066032695,0.287238409,neg,ns,0.933483286,Dscaml1,Dscaml1_Exon,9,45450540,45450589,45450588,45450589,50,+,GGCCGTCTTCAAGTGCCTCATCCCCTCTTCAGTGCAGGAATATGTTAGCG,"Exon (Dscaml1-208/Dscaml1, exon 5 of 6)",9,45426628,45571224,144597,1,Dscaml1-208,23912,Dscaml1-208;Dscaml1-209;Dscaml1-202;Dscaml1-206;Dscaml1-211;Dscaml1-201;Dscaml1-210,Dscaml1;Dscaml1;Dscaml1;Dscaml1;Dscaml1;Dscaml1;Dscaml1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,32,114873,ENSMUSG00000032087,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3780,cg14734006,-0.0000581,0.0000188,-3.085013706,0.00221885,loss,ns,-0.0000233,0.000032,-0.729254537,0.46639659,neg,ns,-0.025443264,0.009373577,-2.714360114,0.007012176,neg,ns,2.15414719,0.001094015,0.000322357,3.393803425,0.000778872,pos,ns,0.548671892,5730522E02Rik,5730522E02Rik_Intergenic_downstream,11,25412748,25412797,25412796,25412797,50,-,CTCAGCCCCATTCAAGTGTGACATTTCTTTTGAATATGACAGTGGCGGCG,Distal Intergenic,11,25602816,25620098,17283,2,5730522E02Rik-205,207350,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,21,90,70626,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10211,cg16848740,0.0000567,0.00000441,12.84168146,1.48E-30,gain,yes,-0.00000547,0.0000075,-0.729161074,0.466453671,neg,ns,0.007122313,0.002196844,3.24206641,0.001315881,pos,ns,2.880783496,0.0000126,0.0000755,0.166808806,0.867629241,pos,ns,0.120213498,Hoxa11,Hoxa11_Exon,6,52244900,52244949,52244948,52244949,50,+,CTTCATAAACCTTATATGCTTATAAAACAGCATATAAAAATTTAACAGCG,Promoter (<=1kb),6,52242106,52245810,3705,2,Hoxa11-201,861,Hoxa10-201;Hoxa10-204;Hoxa11-201;Hoxa11-202,Hoxa10;Hoxa10;Hoxa11;Hoxa11,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,15,18,15396,ENSMUSG00000038210,conserved gene but different region,6,52244948,52245549,602,*,602,70,0.674418605,1.022616968,0.11627907,2.62E-58,CpGisland,TRUE,U13,Hc-P
24306,cg21740009,0.00000943,0.00000372,2.535108511,0.011732643,gain,ns,-0.00000461,0.00000632,-0.72913445,0.466469932,neg,ns,0.001564835,0.001851995,0.844945722,0.398792779,pos,ns,0.399252714,0.0000294,0.0000637,0.461069964,0.645071725,pos,ns,0.105105779,Pou3f1,Pou3f1_Intron,4,124575918,124575967,124575918,124575919,50,+,CGTCAGGGTATCTGAGTTTCACAGAACAGACGGGGTGAGAGTTTTTGTGC,"Intron (Gm2164-201/Gm2164-201, intron 1 of 1)",4,124656807,124660655,3849,1,Pou3f1-201,-80840,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,43,85,18991,ENSMUSG00000090125,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
2165,cg17434470,0.00000963,0.00000731,1.317762727,0.188556083,gain,ns,0.00000905,0.0000124,0.729082667,0.466501559,pos,ns,0.00671375,0.003636616,1.846152907,0.065823204,pos,ns,1.181620984,-0.000168616,0.000125063,-1.348246761,0.178563296,neg,ns,0.883767115,Cyp7b1,Cyp7b1_Intron,3,18163632,18163681,18163680,18163681,50,-,GCTCCAGTAATTATTTTAAACTGCCTTCTGTTGTCCCCCTGAGGAACACG,"Intron (Cyp7b1-201/Cyp7b1, intron 1 of 5)",3,18071950,18243338,171389,2,Cyp7b1-201,79657,Cyp7b1-201,Cyp7b1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,17,13123,ENSMUSG00000039519,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11808,cg20769131,-0.0000286,0.0000119,-2.412316497,0.016431984,loss,ns,0.0000147,0.0000201,0.728989347,0.46655856,pos,ns,-0.008359668,0.005901991,-1.416414844,0.157658126,neg,ns,0.802283641,0.000370656,0.000202969,1.826171296,0.068786198,pos,ns,0.436836504,Unc5b,Unc5b_Intron,10,60807826,60807875,60807826,60807827,50,+,CGTGGGAACGAGGTTTTGAAAAGCTTTTCTTAAAATGGTTATTATTTAGT,"Intron (Unc5b-201/Unc5b, intron 1 of 16)",10,60762593,60831581,68989,2,Unc5b-201,23706,Unc5b-201;Unc5b-202;Unc5b-203,Unc5b;Unc5b;Unc5b,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,107449,ENSMUSG00000020099,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9054,cg05960378,-0.0000139,0.00000968,-1.432647555,0.152966207,loss,ns,0.000012,0.0000165,0.728959843,0.466576582,pos,ns,0.001772585,0.00481986,0.36776689,0.713298027,pos,ns,0.146728977,-0.000102511,0.000165755,-0.618452414,0.536731292,neg,ns,0.790712399,Nova1,Nova1_Exon,12,46720727,46720776,46720775,46720776,50,-,TGTAGAATGCTGACTGGTTCTGTCTTGGCCACATTTTGGGGCATTTCTCG,"Exon (Nova1-201/Nova1, exon 3 of 5)",12,46694517,46818929,124413,2,Nova1-201,98153,Nova1-201;Nova1-204;Nova1-203;Nova1-202;Nova1-205,Nova1;Nova1;Nova1;Nova1;Nova1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,24,664883,ENSMUSG00000021047,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6796,cg00256784,-0.00000515,0.000003,-1.71735405,0.086913209,loss,ns,-0.00000371,0.00000509,-0.72886491,0.466634573,neg,ns,0.001180544,0.001492071,0.791211697,0.429425398,pos,ns,0.367112274,-0.0000804,0.0000513,-1.5672617,0.118073698,neg,ns,0.89030495,Luc7l2,Luc7l2_fiveUTR,6,38554976,38555025,38555024,38555025,50,+,CTAGGGCCCTGGTGGTGGCAACCGCCTGTGTGCCACTGAAAATCGTGCCG,5' UTR,6,38551334,38605040,53707,1,Luc7l2-213,3642,Luc7l2-213;Luc7l2-208;Luc7l2-201;Luc7l2-209;Luc7l2-212;Luc7l2-211;Luc7l2-206;Luc7l2-207;Luc7l2-205;Luc7l2-202;Luc7l2-204;Luc7l2-210,Luc7l2;Luc7l2;Luc7l2;Luc7l2;Luc7l2;Luc7l2;Luc7l2;Luc7l2;Luc7l2;Luc7l2;Luc7l2;Luc7l2,0;0;0;0;3445;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,6,10,192196,ENSMUSG00000029823,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4672,cg06444388,-0.0000144,0.00000673,-2.137007107,0.03337984,loss,ns,0.00000834,0.0000114,0.728851678,0.466642657,pos,ns,0.001259129,0.003350594,0.375792819,0.707327951,pos,ns,0.15037918,0.0000445,0.000115227,0.386178017,0.699629741,pos,ns,0.883990756,Cacna1d,Cacna1d_threeUTR,14,30089322,30089371,30089322,30089323,50,-,CGACGCTACCAACAACAATTAAGGCATCAAAAGTGTTCCATGCATCAGTG,3' UTR,14,30039941,30491453,451513,2,Cacna1d-202,402082,Cacna1d-202;Cacna1d-201;Cacna1d-208;Cacna1d-209;Cacna1d-214;Cacna1d-204;Cacna1d-207;Cacna1d-218;Cacna1d-216;Cacna1d-217;Cacna1d-210;Cacna1d-219,Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,13,26,12289,ENSMUSG00000015968,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15165,cg07248946,-3.09E-08,0.000000859,-0.035990071,0.97131344,loss,ns,-0.00000106,0.00000146,-0.728846542,0.466645794,neg,ns,-0.000624916,0.000427506,-1.461772727,0.144816434,neg,ns,0.839182152,-0.00000272,0.0000147,-0.184812818,0.853496702,neg,ns,0.989890361,Kcnj4,Kcnj4_Exon,15,79485014,79485063,79485062,79485063,50,-,ACCAGGAAGATGCGGTCCAGGCCGATGTCATAGCCCACGTTGAGGTCCCG,"Exon (Kcnj4-201/Kcnj4, exon 2 of 2)",15,79483714,79505241,21528,2,Kcnj4-201,20178,Kcnj4-201,Kcnj4,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,9,16520,ENSMUSG00000044216,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11535,cg22667099,-0.000012,0.00000362,-3.315941711,0.001021824,loss,ns,0.00000447,0.00000614,0.728566829,0.466816686,pos,ns,0.003300453,0.001799316,1.834281968,0.06757048,pos,ns,1.170242996,-0.000121159,0.0000619,-1.958024194,0.051123865,neg,ns,0.906144159,Shtn1,Shtn1_Intron,19,59044199,59044248,59044247,59044248,50,+,CTATCTCTTGTTCTGAATAGAACCAATTTTCAGAGAGCTATGAAATCACG,"Intron (Shtn1-202/Shtn1, intron 3 of 14)",19,58973356,59076069,102714,2,Shtn1-202,31821,Shtn1-202;Shtn1-201,Shtn1;Shtn1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,10,71653,ENSMUSG00000041362,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25043,cg14009779,-0.0000236,0.00000595,-3.973908016,0.000088,loss,ns,0.00000736,0.0000101,0.728469134,0.466876381,pos,ns,-0.004882311,0.002959382,-1.64977352,0.10000211,neg,ns,0.999990838,-0.0000425,0.000101773,-0.417312111,0.676738989,neg,ns,0.909262451,Fgfr2,Fgfr2_Intron,7,131793426,131793475,131793426,131793427,50,-,CGCTTAGGATAATGTAATTGGCCTTAAGGTACAGGAGTTGAATTATTTTC,"Intron (Fgfr2-217/Fgfr2, intron 2 of 6)",7,130162451,133123350,2960900,2,Fgfr2-217,1329875,Fgfr2-217,Fgfr2,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,58,79,14183,ENSMUSG00000030849,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20632,cg27177870,0.00000945,0.00000603,1.565989395,0.118371288,gain,ns,0.00000747,0.0000102,0.728402191,0.466917288,pos,ns,0.00306494,0.003002529,1.02078625,0.308151671,pos,ns,0.511235473,-0.00012765,0.000103257,-1.236243182,0.217304039,neg,ns,0.20126985,D430041D05Rik,D430041D05Rik_Exon,2,104208144,104208193,104208144,104208145,50,+,CGTCTCCCTGAGCTGGGCTTCCCTGATTCGTTGCTGATGACAGAGCCATT,"Exon (D430041D05Rik-201/D430041D05Rik, exon 13 of 21)",2,104143073,104410334,267262,2,D430041D05Rik-201,202141,D430041D05Rik-201;D430041D05Rik-202;D430041D05Rik-203;D430041D05Rik-207;D430041D05Rik-206;D430041D05Rik-204,D430041D05Rik;D430041D05Rik;D430041D05Rik;D430041D05Rik;D430041D05Rik;D430041D05Rik,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,241589,ENSMUSG00000068373,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21848,cg13006091,0.0000184,0.0000108,1.700999288,0.089945898,gain,ns,0.0000134,0.0000183,0.728292947,0.466984049,pos,ns,0.010568803,0.005371081,1.96772378,0.049990992,pos,ns,1.301108244,-0.000424579,0.000184711,-2.298614689,0.022191903,neg,ns,0.798771586,Gm1943,Gm1943_Exon,8,109251462,109251511,109251462,109251463,50,-,CGCTGCTGCTATCACACGAAACTGTGGCGTTGCCCCTGAATGGATGGCAC,"Exon (D030068K23Rik-202/D030068K23Rik-202, exon 10 of 10)",8,109340691,109340864,174,2,Gm1943-201,89402,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,28,384864,NA,mapped to different genes,8,109251360,109251796,437,*,437,24,0.544622426,0.749571184,0.054919909,1.62E-12,CpGisland,TRUE,U15,NS
11050,cg15151468,-0.0000126,0.0000135,-0.935627967,0.350193037,loss,ns,0.0000167,0.0000229,0.728191742,0.467045902,pos,ns,0.011501647,0.006717046,1.712307416,0.087840037,pos,ns,1.056307489,-0.000207206,0.000230999,-0.897002606,0.370413597,neg,ns,0.619412329,Gm13518,Gm13518_Intergenic_downstream,2,56456774,56456823,56456774,56456775,50,+,CGGGGTTAGGGGAAAGTAAATTCAGAGGGAATACAGATCACTTAGCACAG,Distal Intergenic,2,56039853,56040085,233,1,Gm13518-201,416921,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,37,37,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5775,cg26326531,0.00000258,0.00000307,0.841923642,0.400479722,gain,ns,-0.00000379,0.00000521,-0.728138526,0.467078427,neg,ns,0.002584839,0.001526036,1.693825779,0.091302827,pos,ns,1.039515773,-0.000100758,0.0000525,-1.919929695,0.055784265,neg,ns,0.951245782,Wapl,Wapl_Exon,14,34692266,34692315,34692266,34692267,50,+,CGGACTAGAGATTACACTGTTTTACATCCATCTTGCTTGTCAGTTTGTAA,"Exon (Wapl-201/Wapl, exon 3 of 19)",14,34673928,34747983,74056,1,Wapl-201,18338,Wapl-201;Wapl-205;Wapl-202;Wapl-203,Wapl;Wapl;Wapl;Wapl,0;0;0;-2022,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,6,218914,ENSMUSG00000041408,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10995,cg23345269,-0.000000442,0.00000301,-0.146951974,0.88326545,loss,ns,-0.00000372,0.00000511,-0.728089227,0.46710856,neg,ns,-0.001450207,0.00149793,-0.968140755,0.333728786,neg,ns,0.476606331,0.0000408,0.0000515,0.792939781,0.42841935,pos,ns,0.935270731,Macroh2a1,Macroh2a1_Exon,13,56102714,56102763,56102762,56102763,50,-,TGACACCACAATTTACATTAAACAAATGTTTTGAAAATTAGCTGTTCACG,"Exon (Macroh2a1-205/Macroh2a1, exon 4 of 4)",13,56073619,56135631,62013,2,Macroh2a1-201,32868,Macroh2a1-201;Macroh2a1-202;Macroh2a1-204;Macroh2a1-205;Macroh2a1-208;Macroh2a1-207,Macroh2a1;Macroh2a1;Macroh2a1;Macroh2a1;Macroh2a1;Macroh2a1,0;0;0;0;33598;32062,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,9,26914,ENSMUSG00000015937,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19507,cg24570102,-0.0000802,0.00000865,-9.269814185,3.26E-18,loss,yes,0.0000107,0.0000147,0.728008998,0.467157599,pos,ns,-0.006961262,0.004303391,-1.6176225,0.106761001,neg,ns,0.971587361,0.0000718,0.000147993,0.485307117,0.627801298,pos,ns,0.860464219,Foxp1,Foxp1_Intron,6,99485662,99485711,99485710,99485711,50,-,TTCCCCCTCAATTGACCCACAGCTTGTAGTGTCTGCCGAGTTATTCCCCG,"Intron (Foxp1-220/Foxp1, intron 1 of 19)",6,98929189,99520997,591809,2,Foxp1-220,35286,Foxp1-220;Foxp1-224;Foxp1-227;Foxp1-216;Gm20696-201;Gm20696-203,Foxp1;Foxp1;Foxp1;Foxp1;Gm20696;Gm20696,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,87,108655,ENSMUSG00000030067,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9521,cg00543023,-0.00000753,0.00000239,-3.154674007,0.001764379,loss,ns,0.00000295,0.00000405,0.727927935,0.467207152,pos,ns,0.003083535,0.001187449,2.596771653,0.009858999,pos,ns,2.006167191,-0.0000993,0.0000408,-2.432642783,0.015554551,neg,ns,0.938885814,Ap5m1,Ap5m1_threeUTR,14,49090012,49090061,49090060,49090061,50,+,CTGCTAAGTTAGAAAGTCAATTGAATACCAAATGAAGTTTATTTCTTACG,3' UTR,14,49066495,49090879,24385,1,Ap5m1-201,23517,Ap5m1-201;Ap5m1-204;Ap5m1-206;Ap5m1-203;Ap5m1-202,Ap5m1;Ap5m1;Ap5m1;Ap5m1;Ap5m1,0;23481;23470;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,7,7,74385,ENSMUSG00000036291,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7584,cg26352306,-0.000277376,0.0000185,-15.00040967,1.28E-38,loss,yes,0.0000229,0.0000314,0.727913198,0.46721616,pos,ns,0.02813007,0.009203273,3.056528745,0.00243399,pos,ns,2.613681197,-0.001264277,0.0003165,-3.994557065,0.000081,neg,ns,0.508500007,Zbtb20,Zbtb20_Intron,16,43334506,43334555,43334554,43334555,50,-,TTCTGTATGTTTTTCCTTTAAAACCAAGAGCTGGGCAGGCATCCCATTCG,"Intron (Zbtb20-209/Zbtb20, intron 7 of 7)",16,42875881,43463175,587295,1,Zbtb20-209,458625,Zbtb20-209;Zbtb20-211;Zbtb20-217;Zbtb20-218;Zbtb20-204;Zbtb20-215;Zbtb20-201;Zbtb20-203,Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,98,56490,ENSMUSG00000022708,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25025,cg02230564,0.00000212,0.000003,0.705155209,0.481243136,gain,ns,0.00000371,0.0000051,0.727908202,0.467219215,pos,ns,0.004324113,0.001492986,2.896285106,0.004044627,pos,ns,2.393121525,-0.000110288,0.0000513,-2.148033184,0.032485827,neg,ns,0.926508798,Fgfr2,Fgfr2_Intron,7,131585717,131585766,131585765,131585766,50,-,TGCTTTGCAGAAGTGCAGGCAAGTTTCTTCAATATCCTGAGCATTATTCG,"Intron (Fgfr2-217/Fgfr2, intron 2 of 6)",7,130162451,133123350,2960900,2,Fgfr2-217,1537584,Fgfr2-217,Fgfr2,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,58,79,14183,ENSMUSG00000030849,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
321,cg09572652,-0.00000079,0.000000774,-1.019746871,0.308643684,loss,ns,-0.000000958,0.00000132,-0.72789922,0.467224705,neg,ns,0.000152561,0.000385413,0.395838446,0.692496501,pos,ns,0.159582417,-0.00000804,0.0000133,-0.606692767,0.544498871,neg,ns,0.976765567,Klhl29,Klhl29_Exon,12,5102745,5102794,5102793,5102794,50,+,TTCAAACTCTCTGCCTTCAACAACAATTTTCAGGTCTGTAAACGCTTTCG,"Exon (Klhl29-201/Klhl29, exon 6 of 14)",12,5077472,5375682,298211,2,Klhl29-201,272888,Klhl29-201;Klhl29-202,Klhl29;Klhl29,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,23,208439,ENSMUSG00000020627,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17974,cg09833650,-0.00000871,0.00000677,-1.286479562,0.199235667,loss,ns,0.00000837,0.0000115,0.727885994,0.46723279,pos,ns,-0.002033105,0.00337065,-0.603179087,0.5468306,neg,ns,0.262147191,-0.00010616,0.000115916,-0.915831335,0.360467227,neg,ns,0.849209669,Gm12641,Gm12641_Intergenic_upstream,4,93054320,93054369,93054320,93054321,50,+,CGATTTATCCACTGACAAAATGTGCTAATGAAATGTCACCTTGGACAGCT,Distal Intergenic,4,93106988,93109914,2927,1,Gm12641-201,-52619,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,620269,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22450,cg25855336,-0.00000467,0.00000416,-1.123253705,0.262198888,loss,ns,0.00000514,0.00000707,0.727854956,0.467251765,pos,ns,0.00444164,0.002070032,2.145686671,0.03267434,pos,ns,1.485793171,-0.000138026,0.0000712,-1.938894629,0.053421489,neg,ns,0.925505101,Wwox,Wwox_Intron,8,114590892,114590941,114590940,114590941,50,-,AACTTATTATTAATGTGTCACTGTGGGAAACTTACTCTAGTTCATTTGCG,"Intron (Wwox-201/Wwox, intron 5 of 8)",8,114439655,115352708,913054,1,Wwox-201,151237,Wwox-201;Wwox-207;Wwox-203,Wwox;Wwox;Wwox,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,32,32,80707,ENSMUSG00000004637,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9787,cg17538927,-0.00000234,0.0000059,-0.39637068,0.692104288,loss,ns,0.00000729,0.00001,0.727714843,0.467337425,pos,ns,-0.005087207,0.002935647,-1.732908175,0.084106453,neg,ns,1.075170682,0.000135172,0.000100957,1.338915918,0.18157902,pos,ns,0.881232395,Gm48777,Gm48777_Intron,12,50873824,50873873,50873872,50873873,50,-,CTGTTCTCATCTGGCTCACTGCACGACCTAAATAGTCCGTAAATGAGCCG,"Intron (Gm48779-201/Gm48779-201, intron 6 of 8)",12,50895099,50895471,373,2,Gm48777-201,21647,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,10,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23732,cg17359136,0.000114249,0.0000172,6.660336688,1.25E-10,gain,yes,-0.0000212,0.0000291,-0.727691854,0.467351481,neg,ns,0.055758609,0.008537526,6.531002958,2.67E-10,pos,ns,9.57298923,-0.001702405,0.000293605,-5.798287404,1.65E-08,neg,yes,0.238216014,Bahcc1,Bahcc1_Intron,11,120241388,120241437,120241436,120241437,50,+,AAATACCCCTCAGAAACACACATAAAAAAGCCAAATCCAACAACAGAACG,"Intron (Bahcc1-203/Bahcc1, intron 2 of 27)",11,120232947,120292282,59336,1,Bahcc1-203,8441,Bahcc1-203;Bahcc1-201;Bahcc1-204;Bahcc1-202,Bahcc1;Bahcc1;Bahcc1;Bahcc1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,11,268515,ENSMUSG00000039741,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
24957,cg07344086,-0.0000645,0.00000757,-8.516452881,7.23E-16,loss,yes,-0.00000936,0.0000129,-0.727480638,0.467480629,neg,ns,-0.01134552,0.003770021,-3.009405025,0.002832412,neg,ns,2.54784351,0.0000972,0.000129651,0.749347087,0.45421628,pos,ns,0.711820171,Fgfr2,Fgfr2_threeUTR,7,130199852,130199901,130199900,130199901,50,-,GGTCACATTGAACAGAGCCAGCACTTCTGCATTGGAACTATTTATCCCCG,3' UTR,7,130162451,130266263,103813,2,Fgfr2-211,66362,Fgfr2-211;Fgfr2-217;Fgfr2-207;Fgfr2-226;Fgfr2-215;Fgfr2-201;Fgfr2-202;Fgfr2-203;Fgfr2-204;Fgfr2-205;Fgfr2-206;Fgfr2-208;Fgfr2-209;Fgfr2-210;Fgfr2-212;Fgfr2-213;Fgfr2-214;Fgfr2-216;Fgfr2-222;Fgfr2-225;Fgfr2-218,Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,9,79,14183,ENSMUSG00000030849,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27944,cg18901715,-0.00000169,0.00000156,-1.080844779,0.280606288,loss,ns,0.00000193,0.00000266,0.727472028,0.467485895,pos,ns,0.001478254,0.000778144,1.899717017,0.058398159,pos,ns,1.233600844,-0.0000518,0.0000268,-1.937551764,0.053585984,neg,ns,0.968353249,Rps6kc1,Rps6kc1_Intron,1,190807730,190807779,190807730,190807731,50,+,CGCAAGTTATTTTGTTCCACACCAGAGGTGGCTGTATTTCGCTATCAGAT,"Intron (Rps6kc1-204/Rps6kc1, intron 6 of 12)",1,190700202,190911747,211546,2,Rps6kc1-204,103968,Rps6kc1-204;Rps6kc1-206;Rps6kc1-203;Rps6kc1-201;Rps6kc1-205;Rps6kc1-208;Rps6kc1-207,Rps6kc1;Rps6kc1;Rps6kc1;Rps6kc1;Rps6kc1;Rps6kc1;Rps6kc1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,29,320119,ENSMUSG00000089872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17565,cg06648649,-0.000000538,0.00000159,-0.337492518,0.735974055,loss,ns,0.00000197,0.00000271,0.727325685,0.467575389,pos,ns,0.003250149,0.000792732,4.099936954,0.0000528,pos,ns,4.277017887,-0.0000913,0.0000273,-3.349520251,0.000909485,neg,ns,0.958263637,Paxbp1,Paxbp1_Exon,16,91030456,91030505,91030504,91030505,50,-,GATTCATCTTTAATATCATCTTGTCGTCTTTGGACAAGGCGGGAAGCTCG,"Exon (Paxbp1-202/Paxbp1, exon 8 of 18)",16,91014037,91044543,30507,2,Paxbp1-202,14038,Paxbp1-202;Paxbp1-201;Paxbp1-207;Paxbp1-206;Paxbp1-205;Paxbp1-203;Paxbp1-204,Paxbp1;Paxbp1;Paxbp1;Paxbp1;Paxbp1;Paxbp1;Paxbp1,0;0;0;0;-2818;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,7,67367,ENSMUSG00000022974,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19861,cg26098364,0.0000582,0.00000997,5.838146517,1.33E-08,gain,yes,-0.0000123,0.0000169,-0.727321879,0.467577716,neg,ns,0.033225582,0.004961881,6.696166203,1.01E-10,pos,yes,9.997774206,-0.001072328,0.000170639,-6.284202359,1.12E-09,neg,yes,0.383574062,Stard10,Stard10_threeUTR,7,101343210,101343259,101343210,101343211,50,+,CGTGATGTCATCACCCTCCGCTCCTGGCTCCCCATGGGCGCTGATTACAT,3' UTR,7,101317086,101346626,29541,1,Stard10-202,26124,Arap1-204;Gm45344-201;Stard10-202;Stard10-203;Stard10-201;Stard10-211;Stard10-205;Stard10-210;Stard10-204;Stard10-206;Stard10-207;Stard10-208;Stard10-209,Arap1;Gm45344;Stard10;Stard10;Stard10;Stard10;Stard10;Stard10;Stard10;Stard10;Stard10;Stard10;Stard10,-4808;5083;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,5,6,56018,ENSMUSG00000030688,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25988,cg24351649,0.000004,0.00000198,2.017483371,0.044506548,gain,ns,-0.00000245,0.00000337,-0.727241626,0.467626798,neg,ns,0.000556509,0.000987479,0.563565398,0.573457368,pos,ns,0.241498863,-0.0000281,0.000034,-0.82653855,0.409134367,neg,ns,0.043305329,Tnrc18,Tnrc18_fiveUTR,5,142817605,142817654,142817653,142817654,50,+,CCGGGATTGGAAAAGGTACATTACACAACCCCCCTTTCAAGTTCCTCTCG,Promoter (<=1kb),5,142754789,142817662,62874,2,Tnrc18-201,8,Tnrc18-201;Tnrc18-205,Tnrc18;Tnrc18,0;-225,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,7,231861,ENSMUSG00000039477,conserved gene but different region,5,142817653,142817824,172,*,172,17,0.63372093,0.984511785,0.098837209,3.41E-13,CpGisland,TRUE,NA,NRS
1972,cg26355496,-3.82E-08,0.0000021,-0.01821239,0.985481135,loss,ns,0.00000259,0.00000356,0.727240155,0.467627698,pos,ns,0.000270293,0.001044131,0.25886834,0.795908629,pos,ns,0.099136787,0.0000314,0.0000359,0.873151929,0.383256111,pos,ns,0.944008822,Tfec,Tfec_Intergenic_downstream,6,16727586,16727635,16727586,16727587,50,+,CGCCTAATTAATCTTATGGAAATCTCCTGAAGCCAGATTCCAGCAAGGTT,Distal Intergenic,6,16834692,16835263,572,2,Tfec-204,107628,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,19,23,21426,ENSMUSG00000029553,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21582,cg10737123,0.0000114,0.00000448,2.536657966,0.011681922,gain,ns,0.00000553,0.00000761,0.727226124,0.467636279,pos,ns,0.000193703,0.002229573,0.086878852,0.930823899,pos,ns,0.031132474,0.0000522,0.0000767,0.680962161,0.496403759,pos,ns,0.896020384,Zfhx3,Zfhx3_Intron,8,108454871,108454920,108454919,108454920,50,-,ATAAACTGCAAGCAGTCTTTCAACTCACTCGTGCCGAAAATTCACACTCG,"Intron (Zfhx3-204/Zfhx3, intron 3 of 15)",8,107942644,108961630,1018987,1,Zfhx3-204,512227,Zfhx3-204,Zfhx3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,114,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1812,cg27167692,-0.0000147,0.00000829,-1.776420251,0.07664438,loss,ns,0.0000102,0.0000141,0.727225673,0.467636555,pos,ns,0.000498084,0.004124565,0.120760421,0.903959032,pos,ns,0.043851251,-0.000244594,0.000141843,-1.724392302,0.085633877,neg,ns,0.848576912,Foxp2,Foxp2_Intron,6,15400525,15400574,15400525,15400526,50,-,CGCCTTGTTAGCAGACCAGTAGAAGTAGAACAGGCCTGTGAAATGGTGTT,"Intron (Foxp2-207/Foxp2, intron 10 of 18)",6,14901349,15441977,540629,1,Foxp2-207,499176,Foxp2-207;Foxp2-213;Foxp2-205;Foxp2-204;Foxp2-201;Foxp2-214;Foxp2-209;Foxp2-202;Foxp2-206,Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,38,65,114142,ENSMUSG00000029563,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21020,cg09661817,-0.00000524,0.00000634,-0.827294812,0.408706348,loss,ns,-0.00000783,0.0000108,-0.727192797,0.467656663,neg,ns,0.010683376,0.003153125,3.388187185,0.00079441,pos,ns,3.099955479,-0.000485612,0.000108436,-4.478337058,0.0000106,neg,ns,0.869579571,Nfatc3,Nfatc3_Exon,8,106079692,106079741,106079740,106079741,50,-,TCACCCTTTACCTGGAGCAAACCAAAGCCTGGCCACACCCCTATATTTCG,"Exon (Nfatc3-207/Nfatc3, exon 2 of 4)",8,106058840,106092576,33737,1,Nfatc3-207,20852,Nfatc3-207;Nfatc3-206;Nfatc3-202;Nfatc3-203;Nfatc3-201,Nfatc3;Nfatc3;Nfatc3;Nfatc3;Nfatc3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,18021,ENSMUSG00000031902,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25852,cg08350288,0.0000847,0.00002,4.242999794,0.0000292,gain,ns,0.0000247,0.0000339,0.727077525,0.467727169,pos,ns,0.034989593,0.009939317,3.520321582,0.00049568,pos,ns,3.304798827,-0.001111227,0.000341812,-3.250985216,0.001276618,neg,ns,0.32179931,Pax7,Pax7_Intron,4,139767294,139767343,139767342,139767343,50,-,GGGGAGACAGTTGTTGGGAATCACTTTGACTGAGTGGTTTTGTCTCCCCG,"Intron (Pax7-201/Pax7, intron 7 of 8)",4,139737062,139833528,96467,2,Pax7-201,66185,Pax7-201;Pax7-202,Pax7;Pax7,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,27,18509,ENSMUSG00000028736,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23772,cg03962019,0.0000804,0.00000808,9.94895937,2.03E-20,gain,yes,-0.00000998,0.0000137,-0.726934699,0.467814538,neg,ns,0.006346133,0.004020987,1.57825252,0.115527447,pos,ns,0.937314824,-0.000105779,0.000138281,-0.764953786,0.444881001,neg,ns,0.319628197,Foxo6,Foxo6_Intergenic_upstream,4,120304836,120304885,120304884,120304885,50,-,AGCCCTAACCCGGAACAAACAAGCTGTGAGAAACAGTTTACAAAACAGCG,Distal Intergenic,4,120267079,120287349,20271,2,Foxo6-201,-17536,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,9,42,329934,ENSMUSG00000052135,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25678,cg12494488,-0.0000755,0.0000422,-1.787630039,0.07481244,loss,ns,-0.0000521,0.0000717,-0.726918471,0.467824465,neg,ns,-0.035197363,0.021014317,-1.674922963,0.094957763,neg,ns,1.022469523,0.000417918,0.000722681,0.578289026,0.563488861,pos,ns,0.57471236,Btbd3,Btbd3_Exon,2,138280417,138280466,138280417,138280418,50,+,CGGAGAACTTGCAGAGGACAAAGATGAAATCCGTATACCAGATGTCGAAC,"Exon (Btbd3-202/Btbd3, exon 4 of 5)",2,138256565,138287422,30858,1,Btbd3-202,23852,Btbd3-202;Btbd3-204;Btbd3-203;Btbd3-201,Btbd3;Btbd3;Btbd3;Btbd3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,6,228662,ENSMUSG00000062098,conserved gene but different region,2,138280375,138280481,107,*,107,9,0.542056075,1.150537634,0.08411215,0.00000163,CpGisland,TRUE,U9,En-Pp
16386,cg00988711,0.00000154,0.00000216,0.714835684,0.47524855,gain,ns,-0.00000267,0.00000367,-0.726582866,0.468029797,neg,ns,0.000352529,0.001075621,0.327744578,0.743326028,pos,ns,0.12882066,-0.0000229,0.000037,-0.619652233,0.535941937,neg,ns,0.946903907,Mrm1,Mrm1_Intergenic_downstream,11,84802481,84802530,84802529,84802530,50,-,AGAGTTTAATTGCACCTTGTTCTTCATTGAAGTGTCACTGTTTGCACACG,Distal Intergenic,11,84814743,84815390,648,2,Mrm1-203,12909,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,37,42,217038,ENSMUSG00000018405,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23803,cg24851559,-0.00000492,0.00000183,-2.696605468,0.007387931,loss,ns,0.00000225,0.0000031,0.726459718,0.468105155,pos,ns,0.000428785,0.000908893,0.471765787,0.63742585,pos,ns,0.195570328,0.0000203,0.0000313,0.649803927,0.516300091,pos,ns,0.951467266,Kdm5a,Kdm5a_Exon,6,120426934,120426983,120426934,120426935,50,+,CGCAAGACAGCCAGTGGGTTTATGCTACAGTGTGAGCTCTGCAAAGACTG,"Exon (Kdm5a-201/Kdm5a, exon 23 of 28)",6,120364124,120444574,80451,1,Kdm5a-201,62810,Kdm5a-201;Kdm5a-202;Kdm5a-205;Kdm5a-207,Kdm5a;Kdm5a;Kdm5a;Kdm5a,0;-256;-2840;-3221,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,7,214899,ENSMUSG00000030180,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17016,cg19257233,0.00000338,0.00000665,0.509361634,0.610861146,gain,ns,-0.0000082,0.0000113,-0.726406317,0.468137835,neg,ns,-0.010281009,0.003307294,-3.108586123,0.002054206,neg,ns,2.687355913,0.000323507,0.000113738,2.844326808,0.00474648,pos,ns,0.897853584,Zfp423,Zfp423_Intron,8,87873326,87873375,87873326,87873327,50,+,CGCAGCGTGGTGCAATTACCCTTAGTCTCAAAAGGATTCTGCCAGGAGCT,"Intron (Zfp423-202/Zfp423, intron 2 of 7)",8,87661810,87959595,297786,2,Zfp423-202,86220,Zfp423-202;Zfp423-201;Zfp423-207;Zfp423-205;Zfp423-204,Zfp423;Zfp423;Zfp423;Zfp423;Zfp423,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,42,53,94187,ENSMUSG00000045333,conserved gene and region,8,87873259,87873332,74,*,74,8,0.540540541,1.483709273,0.108108108,0.0000012,CpGisland,TRUE,U15,NS
2081,cg00282704,0.0000266,0.00000985,2.704362117,0.007221593,gain,ns,-0.0000122,0.0000167,-0.726353911,0.468169907,neg,ns,0.013333407,0.00490432,2.718706557,0.006922857,pos,ns,2.159714633,-0.000218757,0.000168659,-1.297037668,0.195582726,neg,ns,0.133181102,A930004D18Rik,A930004D18Rik_Intron,2,18029058,18029107,18029058,18029059,50,-,CGCCAGGGACGCCTCTGCAGGTTGAATTCCTGCTCCGTATCACTTCAATT,"Intron (A930004D18Rik-201/A930004D18Rik, intron 1 of 1)",2,18025193,18037737,12545,2,A930004D18Rik-201,8630,A930004D18Rik-201;A930004D18Rik-202;A930004D18Rik-203,A930004D18Rik;A930004D18Rik;A930004D18Rik,0;-298;-187,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,10,77940,ENSMUSG00000054057,mapped to different genes,2,18028841,18029141,301,*,301,25,0.631229236,0.845125786,0.083056478,2.77E-17,CpGisland,TRUE,NA,NRS
19564,cg13548252,0.0000176,0.00000448,3.92916608,0.000105142,gain,ns,0.00000553,0.00000761,0.726273468,0.468219139,pos,ns,0.001688092,0.00223003,0.756981847,0.449635683,pos,ns,0.347139231,-0.0000771,0.0000767,-1.005533972,0.315424022,neg,ns,0.041509234,Sox14,Sox14_Intergenic_downstream,9,99869258,99869307,99869258,99869259,50,-,CGCCTCCCCGGAATTGCACCTTGGGCAGCGGAGCAGAATCCGGAATGTGA,Distal Intergenic,9,99874220,99875655,1436,2,Sox14-202,6397,Sox14-201;Sox14-202,Sox14;Sox14,0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,12,18,20669,ENSMUSG00000053747,mapped to different genes,9,99869255,99869839,585,*,585,42,0.608547009,0.785385501,0.071794872,5.36E-26,CpGisland,TRUE,U3,Pr-B
2624,cg23090824,-0.00000525,0.00000235,-2.232327501,0.026307403,loss,ns,0.0000029,0.00000399,0.726167126,0.468284227,pos,ns,-0.000199917,0.001169553,-0.170934865,0.864386497,neg,ns,0.063292026,-0.0000265,0.0000402,-0.659165022,0.510279142,neg,ns,0.057064547,Pde7b,Pde7b_fiveUTR,10,20724747,20724796,20724747,20724748,50,+,CGGTGCTGCTTGTTCATGAAGACTTGTGCTGCAGAATCCAGCAACTTCAT,Promoter (<=1kb),10,20398004,20725078,327075,2,Pde7b-201,282,Pde7b-201;Pde7b-206;Pde7b-207;Pde7b-203,Pde7b;Pde7b;Pde7b;Pde7b,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,4,29863,ENSMUSG00000019990,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
23205,cg04830825,0.00000272,0.00000252,1.081464151,0.280331259,gain,ns,-0.00000311,0.00000428,-0.726089469,0.468331761,neg,ns,0.004099359,0.001253667,3.269895894,0.001196937,pos,ns,2.921928652,-0.000118781,0.0000431,-2.755068449,0.00621493,neg,ns,0.065765293,Rnf220,Rnf220_Intron,4,117484064,117484113,117484064,117484065,50,+,CGGAAGGCAGCCCCGGAAAACTTCCCGTGGGAAGAGTTCCAGAAATTGCC,"Intron (Rnf220-201/Rnf220, intron 2 of 14)",4,117271463,117497052,225590,2,Rnf220-201,12939,Rnf220-201;Rnf220-207,Rnf220;Rnf220,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1152,cg11661402,0.0000922,0.0000126,7.306038499,2.35E-12,gain,yes,0.0000156,0.0000214,0.725968502,0.468405811,pos,ns,0.023540645,0.006280688,3.748099891,0.000212502,pos,ns,3.672637997,-0.000592908,0.000215992,-2.745040977,0.006403307,neg,ns,0.543842424,Rpl23a-ps13,Rpl23a-ps13_Intergenic_upstream,X,11827017,11827066,11827017,11827018,50,-,CGCCTTTTTATTGGTTTTCTCAAAGTGGTTACAATGCTGTTATTGTAAAA,Distal Intergenic,20,11867265,11867705,441,1,Rpl23a-ps13-201,-40248,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,13,14,628338,NA,mapped to different genes,X,11826887,11827018,132,*,132,10,0.568181818,0.989505247,0.075757576,0.000000879,CpGisland,TRUE,NA,NRS
3710,cg11351443,-0.0000135,0.00000397,-3.405796635,0.000746636,loss,ns,0.0000049,0.00000675,0.725863644,0.468470005,pos,ns,0.000804194,0.001977353,0.40670239,0.684507227,pos,ns,0.164621962,-0.0000687,0.000068,-1.010721314,0.312938065,neg,ns,0.94113798,Adgrb3,Adgrb3_Exon,1,25112190,25112239,25112190,25112191,50,+,CGGTGGTGGCTGACAAAGCTGTTGTTGAAACTACTCCACACTTGGCACAT,"Exon (Adgrb3-203/Adgrb3, exon 9 of 16)",1,25067476,25228826,161351,2,Adgrb3-203,116587,Adgrb3-203;Adgrb3-206;Adgrb3-205;Adgrb3-207;Adgrb3-201;Adgrb3-208;Adgrb3-202,Adgrb3;Adgrb3;Adgrb3;Adgrb3;Adgrb3;Adgrb3;Adgrb3,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,25,210933,ENSMUSG00000033569,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11991,cg16181261,0.000103182,0.0000152,6.786859171,5.83E-11,gain,yes,-0.0000187,0.0000258,-0.725842488,0.468482957,neg,ns,0.03418967,0.007566783,4.518389126,0.00000887,pos,ns,5.051957156,-0.000869137,0.000260221,-3.339996838,0.000940118,neg,ns,0.363596914,Pard3b,Pard3b_Intron,1,62053361,62053410,62053409,62053410,50,-,ATCATTACAGGCTCAGTTCCCTGGTCCATTATCCCTGAAGAGATCATCCG,"Intron (Pard3b-205/Pard3b, intron 3 of 4)",1,61638824,62078259,439436,1,Pard3b-205,414537,Pard3b-205;Pard3b-202;Pard3b-206;Pard3b-201;Pard3b-203,Pard3b;Pard3b;Pard3b;Pard3b;Pard3b,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,4,72823,ENSMUSG00000052062,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20713,cg07069681,0.00000348,0.0000132,0.263525258,0.792320837,gain,ns,0.0000163,0.0000224,0.725701559,0.468569242,pos,ns,0.006983655,0.006563762,1.063971378,0.288169724,pos,ns,0.54035165,-0.000260801,0.000225727,-1.155382251,0.248823674,neg,ns,0.819378804,Dicer1,Dicer1_Intergenic_downstream,12,104593447,104593496,104593447,104593448,50,-,CGGTTCCCATAAAAAGGCCCACATGCCGCTGTTTCAGATGTGTTTTGGAT,Distal Intergenic,12,104697346,104700502,3157,2,Dicer1-205,107055,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,12,192119,ENSMUSG00000041415,conserved gene and region,12,104593406,104593474,69,*,69,9,0.623188406,1.38,0.130434783,0.000000033,CpGisland,TRUE,NA,NRS
27310,cg21906588,0.00000521,0.00000765,0.68023152,0.496865566,gain,ns,0.00000944,0.000013,0.725694651,0.468573472,pos,ns,-0.000442885,0.003809307,-0.116263891,0.907518683,neg,ns,0.042144425,0.000045,0.000131002,0.34357811,0.731396493,pos,ns,0.645835988,Ap1s2,Ap1s2_threeUTR,X,163932100,163932149,163932148,163932149,50,+,TGCTTACCAGAGTCTCACATTTTCCCTCCACAGGAAGCTGAAACCCCACG,3' UTR,20,163909017,163933666,24650,1,Ap1s2-202,23083,Ap1s2-202;Ap1s2-201;Ap1s2-203;Ap1s2-204;Zrsr2-202,Ap1s2;Ap1s2;Ap1s2;Ap1s2;Zrsr2,0;0;22955;0;26440,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,1,108012,ENSMUSG00000031367,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15482,cg00851988,-0.000028,0.00000504,-5.561555264,5.78E-08,loss,yes,0.00000621,0.00000855,0.725654106,0.468598298,pos,ns,-0.003890892,0.002506151,-1.552536658,0.121554152,neg,ns,0.915230204,0.0000632,0.0000862,0.733001865,0.464111194,pos,ns,0.944843665,Alpk3,Alpk3_Exon,7,81098782,81098831,81098830,81098831,50,+,GCTAAGGGTCTGGCTGACTCTGGCTGCTGGGGGGACAAGCTCTTTGGGCG,"Exon (Alpk3-201/Alpk3, exon 10 of 14)",7,81057600,81105612,48013,1,Alpk3-201,41182,Alpk3-201;Alpk3-202,Alpk3;Alpk3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,116904,ENSMUSG00000038763,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2156,cg17448131,0.00000364,0.00000831,0.438231239,0.661523881,gain,ns,0.0000102,0.0000141,0.725651874,0.468599665,pos,ns,-0.000856362,0.004134628,-0.207119436,0.836052567,neg,ns,0.077766416,0.0000155,0.00014219,0.109222575,0.913096622,pos,ns,0.785594196,Pou6f2,Pou6f2_threeUTR,13,18125510,18125559,18125510,18125511,50,-,CGGCTTGATCTTCTGGGCACTTTTAGGGGTGATGTCCAGCTTTTCAAACC,3' UTR,13,18121098,18382041,260944,2,Pou6f2-201,256482,Pou6f2-201;Pou6f2-202;Pou6f2-204,Pou6f2;Pou6f2;Pou6f2,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,7,18,218030,ENSMUSG00000009734,conserved gene and region,13,18125393,18125511,119,*,119,9,0.588235294,0.885856079,0.075630252,0.00000392,CpGisland,TRUE,U15,NS
1567,cg25054583,0.000140581,0.0000163,8.633454941,3.18E-16,gain,yes,-0.0000201,0.0000277,-0.725529726,0.468674461,neg,ns,0.016206424,0.008104379,1.99971204,0.046403682,pos,ns,1.333447557,-0.000449135,0.000278709,-1.6114852,0.108091642,neg,ns,0.081339698,Runx1t1,Runx1t1_Promoter,4,13743326,13743375,13743326,13743327,50,+,CGCCGCCTGTGACAGTGGCAATTCCCTGCGCCCCACATCACATTTGTCTG,Promoter (<=1kb),4,13743436,13893649,150214,1,Runx1t1-201,-61,Runx1t1-201,Runx1t1,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,24,12395,ENSMUSG00000006586,conserved gene but different region,4,13742963,13743355,393,*,393,51,0.737913486,0.971781818,0.129770992,2.14E-45,CpGisland,TRUE,U3,Pr-B
21350,cg03329397,0.000118887,0.0000166,7.171475046,5.48E-12,gain,yes,-0.0000204,0.0000282,-0.725210108,0.468870208,neg,ns,0.029196631,0.008250906,3.538597178,0.000463846,pos,ns,3.333626037,-0.000589147,0.000283748,-2.076302803,0.038689695,neg,ns,0.200926109,Cacna2d2,Cacna2d2_Intron,9,107449238,107449287,107449286,107449287,50,+,CGAGATTCATTTCCTTAAACACACATTGTCTCACTCCAATTTCACGTCCG,"Intron (Cacna2d2-201/Cacna2d2, intron 2 of 37)",9,107399612,107529343,129732,1,Cacna2d2-201,49626,Cacna2d2-201;Cacna2d2-205;Cacna2d2-202;Cacna2d2-203;Cacna2d2-204;Cacna2d2-208,Cacna2d2;Cacna2d2;Cacna2d2;Cacna2d2;Cacna2d2;Cacna2d2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,18,56808,ENSMUSG00000010066,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16823,cg04855622,-0.0000995,0.0000115,-8.663793203,2.57E-16,loss,yes,0.0000141,0.0000195,0.725169974,0.468894791,pos,ns,-0.010668328,0.005714789,-1.866792963,0.062874358,neg,ns,1.201526434,0.000309619,0.000196531,1.575421456,0.116179137,pos,ns,0.922872681,Nppc,Nppc_Intergenic_downstream,1,86643465,86643514,86643513,86643514,50,+,CTATTCATATATTTAAAATAAATTGTGCATCTTTTAGCAGGCAGTCAGCG,Distal Intergenic,1,86666291,86670571,4281,2,Nppc-201,27057,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,18159,ENSMUSG00000026241,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2925,cg00939855,0.0000247,0.00000744,3.320491628,0.00100588,gain,ns,-0.00000916,0.0000126,-0.725099116,0.468938195,neg,ns,0.001317665,0.003702561,0.35587939,0.722172946,pos,ns,0.141358785,-0.0000813,0.000127331,-0.638542063,0.523592338,neg,ns,0.525133539,Gm11880,Gm11880_Intergenic_downstream,4,22067269,22067318,22067269,22067270,50,-,CGTGAATGTAGAGAACGCTGTTTGACTTTGGATAATAGGAATCAGGCAGC,Distal Intergenic,4,22117134,22117532,399,2,Gm11880-201,50263,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,11,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15237,cg10568433,-0.000032,0.00000656,-4.869024805,0.00000179,loss,yes,0.00000809,0.0000112,0.725057963,0.468963404,pos,ns,0.00328269,0.00326732,1.004704047,0.315822958,pos,ns,0.500556303,-0.000186934,0.000112363,-1.663664885,0.097189939,neg,ns,0.895013072,Gm18605,Gm18605_Intron,14,79879848,79879897,79879848,79879849,50,-,CGGTACTTTATGAATATTCACTGAAGTGTAAACCTGCACATTGCTCATAC,"Intron (Gm6999-201/Gm6999-201, intron 1 of 4)",14,79947657,79948279,623,1,Gm18605-201,-67809,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,6,100417424,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11868,cg04232475,0.0000957,0.0000139,6.88734946,3.17E-11,gain,yes,-0.0000171,0.0000236,-0.724937799,0.469037017,neg,ns,0.016763746,0.006919019,2.422850235,0.015971961,pos,ns,1.796641751,-0.000707802,0.000237944,-2.974653939,0.003163641,neg,ns,0.079255146,Tle3,Tle3_Promoter,9,61368790,61368839,61368838,61368839,50,+,TCCGGTAGCAAATGACCCTGACACTTCTTGTAACATAAACAGTTGAAACG,Promoter (3-4kb),9,61372366,61418497,46132,1,Tle3-218,-3527,Tle3-218;Tle3-204;Tle3-201;Tle3-215;Tle3-212;Tle3-208;Tle3-207;Tle3-217;Tle3-202;Tle3-206;Tle3-210;Tle3-205;Tle3-211,Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3,0;0;0;0;0;0;0;0;0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,11,30,21887,ENSMUSG00000032280,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17,cg10443965,0.00000504,0.00000314,1.607888586,0.10887754,gain,ns,-0.00000386,0.00000533,-0.724904851,0.469057203,neg,ns,-0.001198057,0.001560891,-0.767546663,0.44334077,neg,ns,0.353262328,0.0000668,0.0000537,1.245058566,0.214050566,pos,ns,0.930874834,Patz1,Patz1_Exon,11,3299064,3299113,3299064,3299065,50,+,CGTCTGCGCTCCCACCTGGCCTGTCATGAAGACAAGGTGCCCTGCCAGGT,"Exon (Patz1-204/Patz1, exon 3 of 4)",11,3289167,3309083,19917,1,Patz1-204,9897,Patz1-204;Patz1-210;Patz1-207;Patz1-203;Patz1-205;Patz1-201;Patz1-202;Patz1-206;Patz1-211;Patz1-208;Patz1-212,Patz1;Patz1;Patz1;Patz1;Patz1;Patz1;Patz1;Patz1;Patz1;Patz1;Patz1,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,9,56218,ENSMUSG00000020453,mapped to different genes,11,3298967,3299071,105,*,105,9,0.628571429,0.880708295,0.085714286,0.00000139,CpGisland,TRUE,U10,Tr-S
13980,cg02518713,-0.000062,0.00000897,-6.913727738,2.70E-11,loss,yes,-0.000011,0.0000152,-0.724794371,0.469124891,neg,ns,0.022446042,0.004463235,5.029097439,0.000000836,pos,ns,6.078016451,-0.000898564,0.00015349,-5.854205967,1.22E-08,neg,yes,0.722783744,Gm6263,Gm6263_Exon,13,74018991,74019040,74019039,74019040,50,+,GTCACCAGTTCCCACAGAAGCACTGCAAAACTCCACATGTCTGCTGAGCG,"Exon (Gm6263-201/Gm6263, exon 1 of 1)",13,74018793,74020134,1342,2,Gm6263-201,1094,Gm6263-201;Tppp-202;Tppp-201,Gm6263;Tppp;Tppp,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,621824,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4350,cg05820448,0.0000304,0.00000516,5.877061555,1.08E-08,gain,yes,0.00000636,0.00000877,0.724764793,0.469143013,pos,ns,0.00411526,0.002570552,1.600924579,0.110412156,pos,ns,0.956983111,-0.0000238,0.0000884,-0.269056628,0.788065088,neg,ns,0.098988477,Shh,Shh_fiveUTR,5,28467038,28467087,28467038,28467039,50,+,CGAGACAGCAATCAAAAGACAAAAAGAGTCTGATTTTAAATGGTAGCAAG,Promoter (<=1kb),5,28456815,28467256,10442,2,Shh-201,169,Shh-201,Shh,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,2,20423,ENSMUSG00000002633,conserved gene and region,5,28466766,28467039,274,*,274,28,0.653284672,0.95923981,0.102189781,6.68E-22,CpGisland,TRUE,U13,Hc-P
25607,cg06678170,0.0000488,0.00000561,8.709261304,1.86E-16,gain,yes,0.00000691,0.00000953,0.724731255,0.469163562,pos,ns,0.004491954,0.002791564,1.609116952,0.10860862,pos,ns,0.964135704,0.00000931,0.000096,0.096973421,0.922810166,pos,ns,0.128613357,Ebf3,Ebf3_Intron,7,137310755,137310804,137310803,137310804,50,-,ATTTTTTATTTTGTAGCACAAACAGAAATCCATAAACTGTCGGTTCAGCG,"Intron (Ebf3-204/Ebf3, intron 4 of 15)",7,137193673,137314445,120773,2,Ebf3-204,3641,Ebf3-204;Ebf3-201;Ebf3-202;Ebf3-203;Ebf3-208;Ebf3-206,Ebf3;Ebf3;Ebf3;Ebf3;Ebf3;Ebf3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,62,84,13593,ENSMUSG00000010476,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10543,cg06541255,0.00000136,0.00000125,1.091109415,0.27607206,gain,ns,-0.00000153,0.00000212,-0.724716525,0.469172588,neg,ns,-0.000445166,0.000619689,-0.71836945,0.473070584,neg,ns,0.325074056,0.00000347,0.0000213,0.163017495,0.870610877,pos,ns,0.974813593,P4ha2,P4ha2_Exon,11,54126252,54126301,54126252,54126253,50,-,CGGCCTCAAAACAGAGGGGAATAGGTTAGCGACGTTTCTTAACTACGTAA,"Exon (P4ha2-202/P4ha2, exon 13 of 16)",11,54100924,54131652,30729,1,P4ha2-202,25328,P4ha2-202;P4ha2-204;P4ha2-201;P4ha2-215;P4ha2-212;P4ha2-210,P4ha2;P4ha2;P4ha2;P4ha2;P4ha2;P4ha2,0;0;0;0;1579;-1392,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,Exon,1,1,18452,ENSMUSG00000018906,conserved gene and region,11,54126238,54126470,233,*,233,15,0.52360515,0.951797386,0.064377682,5.51E-09,CpGisland,TRUE,NA,NRS
4825,cg16619260,-0.000000409,0.00000141,-0.289060037,0.772728643,loss,ns,0.00000174,0.0000024,0.724666044,0.46920352,pos,ns,0.00072164,0.000703512,1.025768559,0.305800429,pos,ns,0.514561909,0.0000113,0.0000242,0.466949066,0.640864333,pos,ns,0.961085553,Phf3,Phf3_Exon,1,30863051,30863100,30863099,30863100,50,-,ACTTGCAGATCCTAGCATAGGATCCTTATCGCTGAGCATGTTCTTCAGCG,Promoter (<=1kb),1,30824416,30863070,38655,2,Phf3-207,0,Phf3-205;Phf3-201;Phf3-204;Phf3-213;Phf3-212;Phf3-207;Phf3-209;Phf3-208,Phf3;Phf3;Phf3;Phf3;Phf3;Phf3;Phf3;Phf3,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,213109,ENSMUSG00000048874,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1643,cg07227573,0.0000495,0.00000482,10.26947137,1.73E-21,gain,yes,-0.00000593,0.00000818,-0.724613413,0.46923577,neg,ns,0.002978224,0.002397001,1.242479296,0.214998817,pos,ns,0.667563931,0.0000283,0.0000824,0.342821559,0.73196505,pos,ns,0.058720213,Zfp521,Zfp521_fiveUTR,18,13972525,13972574,13972525,13972526,50,-,CGCTCCGGTAGTCCACATAATAATGGAAAATGGAAGCAAGGCCCCCAAAG,Promoter (<=1kb),18,13846870,13972548,125679,2,Zfp521-202,0,Zfp521-201;Zfp521-204;Zfp521-203;Zfp521-202,Zfp521;Zfp521;Zfp521;Zfp521,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,81,225207,ENSMUSG00000024420,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
23532,cg07024948,0.0000497,0.00000686,7.238763659,3.59E-12,gain,yes,0.00000844,0.0000117,0.724519556,0.469293286,pos,ns,0.008485796,0.00341381,2.485725691,0.013455477,pos,ns,1.871100893,-0.000021,0.000117401,-0.178750607,0.858250294,neg,ns,0.112562651,Sp8,Sp8_Promoter,12,118840617,118840666,118840617,118840618,50,-,CGATCTAATTTCTTCGTGATAGTCAGCTAATTGCTCTGGCAGGTAATTAG,Promoter (5-6kb),12,118846329,118852576,6248,1,Sp8-201,-5712,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,27,29,320145,ENSMUSG00000048562,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
27074,cg23486717,-2.94E-08,0.00000195,-0.015091915,0.987968559,loss,ns,0.0000024,0.00000331,0.724377485,0.469380354,pos,ns,0.000905432,0.000970848,0.932619345,0.351742329,pos,ns,0.453775365,0.00000119,0.0000334,0.035550697,0.971663502,pos,ns,0.95612766,Gm38213,Gm38213_Intergenic_upstream,1,157799240,157799289,157799240,157799241,50,-,CGGTAAAACATATTTTCCTACGGTAATGATTTTATGGGCCCATAAGTCAT,Distal Intergenic,1,157621964,157622136,173,2,Gm38213-201,-177153,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15242,cg27064708,-0.000114556,0.0000281,-4.075031537,0.0000585,loss,ns,-0.0000346,0.0000478,-0.72433153,0.469408519,neg,ns,0.070420612,0.013991503,5.033098282,0.00000082,pos,ns,6.086394647,-0.003822338,0.000481167,-7.943897173,3.65E-14,neg,yes,0.580020486,Gm5654,Gm5654_Intergenic_downstream,12,79905848,79905897,79905848,79905849,50,+,CGGCCACAGGCCGATTCTCGGCAATTAAAAATAATATTGGCCCTGATAGA,Distal Intergenic,12,79939165,79939639,475,2,Gm5654-201,33742,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,435309,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7269,cg13589316,-0.000021,0.00000839,-2.500360963,0.01292285,loss,ns,-0.0000103,0.0000143,-0.72421223,0.469481642,neg,ns,-0.00732281,0.004176254,-1.753439655,0.08051488,neg,ns,1.094123849,0.000114674,0.000143621,0.798448005,0.425221808,pos,ns,0.715281157,Gm5267,Gm5267_Intron,1,41918909,41918958,41918909,41918910,50,+,CGTTAATCTGCTGAGGAATGAGGCAATTCTAAACAATTTTCTCAGTGAAA,"Intron (Gm29260-201/Gm29260-201, intron 4 of 5)",1,42103289,42104333,1045,1,Gm5267-201,-184331,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,15,383634,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26548,cg15437154,-0.0000071,0.00000344,-2.066368987,0.039623937,loss,ns,-0.00000423,0.00000584,-0.724207926,0.46948428,neg,ns,-0.00119316,0.001710956,-0.697364551,0.486097344,neg,ns,0.313276752,0.0000305,0.0000588,0.518037936,0.604801313,pos,ns,0.898071822,Casz1,Casz1_Intron,4,148908495,148908544,148908495,148908496,50,-,CGGCCCCATTAAGGGGAGAAGCAATAAGGCGGTGAGTCAAACAGGTAATA,"Intron (Casz1-201/Casz1, intron 4 of 15)",4,148804429,148945129,140701,1,Casz1-201,104066,Casz1-201;Casz1-202;Casz1-206,Casz1;Casz1;Casz1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,94,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19285,cg25060925,-2.06E-08,0.00000118,-0.017387236,0.986138877,loss,ns,-0.00000146,0.00000201,-0.724159053,0.469514237,neg,ns,-0.000196386,0.000588843,-0.333511024,0.738974038,neg,ns,0.131370819,-0.00000895,0.0000203,-0.442098583,0.658726132,neg,ns,0.962901056,Foxp1,Foxp1_threeUTR,6,98940975,98941024,98941023,98941024,50,+,AAGCAAGTAAAGGCTCTTACTGTGCGACAAGCTCGTCAAAGTTTTCATCG,3' UTR,6,98925338,99266515,341178,2,Foxp1-206,325491,Foxp1-206;Foxp1-204;Foxp1-220;Foxp1-230;Foxp1-225;Foxp1-201;Foxp1-205;Foxp1-207;Foxp1-208;Foxp1-226;Foxp1-228;Foxp1-221;Foxp1-222;Foxp1-210,Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,9,87,108655,ENSMUSG00000030067,mapped to different genes,6,98940999,98941068,70,*,70,8,0.6,1.281464531,0.114285714,0.000000774,CpGisland,TRUE,U10,Tr-S
25916,cg10911722,0.00000454,0.00000842,0.539072786,0.59022356,gain,ns,-0.0000104,0.0000143,-0.72408266,0.469561066,neg,ns,0.012142181,0.004189011,2.898579137,0.004015942,pos,ns,2.3962126,-0.000626877,0.00014406,-4.351504072,0.0000184,neg,ns,0.849835036,Rcc2,Rcc2_Exon,4,140707972,140708021,140708020,140708021,50,-,AAAGGGCAGCTTTTGATTTTTGGGGCAACCAACTGGGACTTGATTGGTCG,"Exon (Rcc2-202/Rcc2, exon 5 of 15)",4,140700541,140723220,22680,1,Rcc2-202,7431,Rcc2-202;Rcc2-205;Rcc2-201,Rcc2;Rcc2;Rcc2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,3,108911,ENSMUSG00000040945,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27524,cg02784298,0.0000049,0.00000336,1.457206343,0.146071626,gain,ns,-0.00000413,0.00000571,-0.724039306,0.469587643,neg,ns,-0.000515813,0.001672913,-0.308332324,0.758036556,neg,ns,0.12030985,-0.000053,0.0000575,-0.920730334,0.357907176,neg,ns,0.902177725,Gm5265,Gm5265_Intergenic_downstream,1,169060814,169060863,169060862,169060863,50,+,AGATTGGTAAATCTTTCTGCATCTCACATCTTTAGTCCATCTGTTAGCCG,Distal Intergenic,1,169453528,169453869,342,2,Gm5265-201,393006,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,13,13,383613,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10233,cg16955777,-0.0000021,0.000000932,-2.250583807,0.02511257,loss,ns,-0.00000115,0.00000158,-0.723969198,0.469630623,neg,ns,-0.001309905,0.000464058,-2.82271995,0.005069655,neg,ns,2.295021627,0.0000255,0.000016,1.598373051,0.110978699,pos,ns,0.987655417,Tcf7,Tcf7_Exon,11,52255113,52255162,52255161,52255162,50,-,CCAATCCGTCTGCTGGTTGAGGCCAAAGCGAGCACGGCATTTCTTAGGCG,"Exon (Tcf7-203/Tcf7, exon 9 of 9)",11,52252371,52282571,30201,2,Tcf7-201,27409,Tcf7-201;Tcf7-202;Tcf7-203,Tcf7;Tcf7;Tcf7,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,8,21414,ENSMUSG00000000782,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21264,cg12006359,-0.00000422,0.00000226,-1.867766507,0.062738023,loss,ns,0.00000278,0.00000384,0.723788249,0.469741563,pos,ns,0.003406257,0.001124735,3.028498687,0.00266427,pos,ns,2.574421793,-0.0000554,0.0000387,-1.433257353,0.152792054,neg,ns,0.942141901,Ssbp3,Ssbp3_Intron,4,107025597,107025646,107025645,107025646,50,+,AATTAATGTCTGTTAATTAAGAAAATTGCTCATGGTAACAAACCATGCCG,"Intron (Ssbp3-216/Ssbp3, intron 5 of 8)",4,106910701,107031069,120369,1,Ssbp3-216,114896,Ssbp3-216;Ssbp3-201;Ssbp3-215;Ssbp3-202;Ssbp3-203;Ssbp3-213;Ssbp3-214;Ssbp3-211;Ssbp3-212;Ssbp3-204;Ssbp3-206;Ssbp3-210,Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,18,72475,ENSMUSG00000061887,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7349,cg11730351,0.0000148,0.00000591,2.510128752,0.012577877,gain,ns,0.00000726,0.00001,0.723757181,0.469760612,pos,ns,0.007141882,0.002939461,2.429656656,0.015680802,pos,ns,1.80463174,-0.000227372,0.000101088,-2.249249457,0.025198273,neg,ns,0.070669551,Crtac1,Crtac1_Intron,19,42380599,42380648,42380647,42380648,50,+,ACCCCTTTCTTCTTCTTGATATATTTAGTAACGACCTTAAAGAGTCTGCG,"Intron (Crtac1-203/Crtac1, intron 2 of 14)",19,42268287,42431785,163499,2,Crtac1-203,51137,Crtac1-203;Crtac1-201;Gm50184-201,Crtac1;Crtac1;Gm50184,0;0;-1498,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,8,72832,ENSMUSG00000042401,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
6200,cg11097249,-0.0000102,0.00000783,-1.308853591,0.191553374,loss,ns,0.00000963,0.0000133,0.723738326,0.469772174,pos,ns,0.006199322,0.003897603,1.590547269,0.112730735,pos,ns,0.947957663,-0.000366849,0.000134038,-2.736895485,0.006560114,neg,ns,0.619766829,Tenm2,Tenm2_Intron,11,36293105,36293154,36293153,36293154,50,-,CTGCAAAATTAAAGTGCACTGCAACATGAAATGCTGCTGGTGGCCAGGCG,"Intron (Tenm2-202/Tenm2, intron 6 of 30)",11,36006656,37235882,1229227,2,Tenm2-202,942728,Tenm2-202;Tenm2-208;Tenm2-201;Tenm2-204;Tenm2-205;Tenm2-206,Tenm2;Tenm2;Tenm2;Tenm2;Tenm2;Tenm2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,47,84,23964,ENSMUSG00000049336,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10400,cg17644722,-0.0000553,0.0000117,-4.715258443,0.00000365,loss,ns,0.0000144,0.0000199,0.723733822,0.469774935,pos,ns,0.000145007,0.005841329,0.024824326,0.980211059,pos,ns,0.008680402,-0.00047351,0.000200883,-2.35714299,0.019037613,neg,ns,0.716025143,Npas3,Npas3_Exon,12,53354422,53354471,53354470,53354471,50,-,CTACCTACCAGAAGTATGTTGAAATCTTTGTGAGTCTTCCTTCTGGCTCG,"Exon (Npas3-201/Npas3, exon 2 of 12)",12,53248157,54069532,821376,1,Npas3-204,106265,Npas3-204;Npas3-201;Npas3-202;Npas3-203,Npas3;Npas3;Npas3;Npas3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,13,103,27386,ENSMUSG00000021010,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12254,cg26070145,-0.0000168,0.00000668,-2.513727148,0.012452872,loss,ns,-0.00000821,0.0000114,-0.723556343,0.469883766,neg,ns,-0.010936922,0.003325482,-3.288822916,0.001121831,neg,ns,2.950072518,0.000236234,0.000114363,2.065646004,0.039692676,pos,ns,0.886645439,Ptch1,Ptch1_Intron,13,63571252,63571301,63571300,63571301,50,+,GCTTATTGTGTGTCTTTCTTTCATACTGCTAATCCGGTTTACACATCACG,"Intron (Ptch1-204/Ptch1, intron 1 of 23)",13,63508329,63573460,65132,2,Ptch1-204,2159,Ptch1-204;Ptch1-205,Ptch1;Ptch1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,36,19206,ENSMUSG00000021466,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
5438,cg05166684,0.00000242,0.00000585,0.412718273,0.680098329,gain,ns,-0.0000072,0.00000995,-0.723509675,0.469912386,neg,ns,-0.002106852,0.002913579,-0.723114913,0.470154516,neg,ns,0.327759388,-0.0000887,0.000100198,-0.885356386,0.376650668,neg,ns,0.805883212,Gdf2,Gdf2_Exon,14,33945444,33945493,33945444,33945445,50,-,CGTGCAGACCCTGGTGCATCTCAAGTTCCCCACAAAGGTGGGCAAGGCCT,"Exon (Gdf2-201/Gdf2, exon 2 of 2)",14,33941039,33947198,6160,1,Gdf2-201,4405,Gdf2-201,Gdf2,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,12165,ENSMUSG00000072625,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7649,cg05376468,-0.00000421,0.00000322,-1.305715938,0.192617313,loss,ns,-0.00000396,0.00000547,-0.723477214,0.469932293,neg,ns,-0.001735777,0.001603105,-1.082759055,0.279756857,neg,ns,0.55321926,-0.0000649,0.0000551,-1.176573743,0.240268342,neg,ns,0.935866791,Jakmip2,Jakmip2_Exon,18,43562566,43562615,43562614,43562615,50,+,GTTGTTTATCTTCTACCCAGTGTGAATCCTGTTTGACAAAGAATATCGCG,"Exon (Jakmip2-201/Jakmip2, exon 12 of 22)",18,43531407,43687773,156367,2,Jakmip2-201,125158,Jakmip2-201;Jakmip2-205,Jakmip2;Jakmip2,0;7562,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,76217,ENSMUSG00000024502,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1172,cg06827019,-0.00000105,0.00000176,-0.596998482,0.550944157,loss,ns,-0.00000217,0.00000299,-0.723332303,0.47002117,neg,ns,0.000186705,0.000877303,0.212817319,0.831609332,pos,ns,0.080080646,-0.00000245,0.0000302,-0.081190478,0.935342864,neg,ns,0.956573314,Gm14512,Gm14512_Intergenic_downstream,X,11989581,11989630,11989581,11989582,50,-,CGATGCTCCCTGGGATGATTGCTTCTATAACTTATGGAGACAGCTGAGCG,Distal Intergenic,20,11984468,11984697,230,1,Gm14512-201,5162,Gm14512-201,Gm14512,5113,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,22,22,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4639,cg06149148,-0.00000846,0.00000563,-1.502761412,0.133918559,loss,ns,0.00000692,0.00000957,0.723312854,0.470033099,pos,ns,0.002797076,0.002802408,0.99809716,0.319010683,pos,ns,0.496194773,-0.000127588,0.0000964,-1.323875799,0.186519669,neg,ns,0.140347302,Mecom,Mecom_fiveUTR,3,30013162,30013211,30013210,30013211,50,-,CTGTCTCTTTAAAGAGGATCTGCTCGGCCATCCAGAAAGAACCCGGGGCG,Promoter (<=1kb),3,29983961,30013204,29244,2,Mecom-216,0,Mecom-206;Mecom-212;Mecom-202;Mecom-203;Mecom-210;Mecom-213;Mecom-207;Mecom-208;Mecom-205;Mecom-216;Mecom-214;Mecom-211,Mecom;Mecom;Mecom;Mecom;Mecom;Mecom;Mecom;Mecom;Mecom;Mecom;Mecom;Mecom,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,13,80,14013,ENSMUSG00000027684,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
9402,cg08047455,-0.00000524,0.00000392,-1.336613601,0.182328936,loss,ns,-0.00000481,0.00000666,-0.723201761,0.470101241,neg,ns,-0.001327934,0.001950291,-0.680889969,0.496449379,neg,ns,0.304125029,-0.0000331,0.0000671,-0.493121847,0.622275622,neg,ns,0.910704074,Zbtb16,Zbtb16_Exon,9,48659768,48659817,48659768,48659769,50,-,CGTTTGTGGCTCTTGAGTGTGCTCTCATCCCGGAAGCAGCTGCCACAGAA,"Exon (Zbtb16-201/Zbtb16, exon 6 of 7)",9,48654297,48835945,181649,2,Zbtb16-201,176128,Zbtb16-201;Zbtb16-202,Zbtb16;Zbtb16,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,37,235320,ENSMUSG00000066687,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14677,cg05076398,0.0000665,0.00000626,10.62417113,1.09E-22,gain,yes,-0.00000769,0.0000106,-0.72315673,0.470128864,neg,ns,0.004236571,0.003116676,1.359323297,0.175032161,pos,ns,0.756882145,0.0000757,0.000107182,0.705835562,0.480820484,pos,ns,0.071315767,Ctnna2,Ctnna2_fiveUTR,6,77243516,77243565,77243516,77243517,50,-,CGCTTCCAATGGACATTCTCCAGTCTCTCTGGAAAGATTCTCGCTAATGG,5' UTR,6,76881637,77979699,1098063,2,Ctnna2-204,736134,Ctnna2-204;Ctnna2-205;Ctnna2-202;Ctnna2-201;Lrrtm1-201;Lrrtm1-202;Lrrtm1-203;Lrrtm1-204,Ctnna2;Ctnna2;Ctnna2;Ctnna2;Lrrtm1;Lrrtm1;Lrrtm1;Lrrtm1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,24,12386,ENSMUSG00000063063,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
22990,cg18985987,0.000000147,0.00000194,0.075786804,0.9396376,gain,ns,-0.00000238,0.0000033,-0.722905826,0.470282788,neg,ns,0.000416144,0.000965889,0.430840782,0.666883556,pos,ns,0.175949991,0.0000186,0.0000332,0.559558066,0.576184972,pos,ns,0.06847062,Cnot2,Cnot2_fiveUTR,10,116581424,116581473,116581472,116581473,50,-,AGACTTCCGAAAATTTACCAAAAACTCACCGCATGAATTTTCTTGTCCCG,Promoter (<=1kb),10,116504040,116581465,77426,2,Cnot2-211,0,Cnot2-210;Cnot2-212;Cnot2-203;Cnot2-202;Cnot2-213;Cnot2-209;Cnot2-214;Cnot2-215;Cnot2-205;Cnot2-207;Cnot2-211;Cnot2-217;Cnot2-216;Cnot2-206;Cnot2-201;Cnot2-208;Cnot2-218,Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,6,15,72068,ENSMUSG00000020166,conserved gene and region,10,116580884,116582169,1286,*,1286,165,0.732503888,0.960135747,0.128304821,1.12E-144,CpGisland,TRUE,U1,Pr-A
3761,cg12163477,0.0000307,0.00000796,3.856098157,0.000140117,gain,ns,0.00000978,0.0000135,0.722888922,0.470293159,pos,ns,0.00851221,0.003963784,2.147495966,0.032528903,pos,ns,1.487730583,-0.000207754,0.000136314,-1.524080104,0.128508181,neg,ns,0.351583503,Grin1,Grin1_threeUTR,2,25291947,25291996,25291995,25291996,50,-,CCCAGGGTGGGCAGTCTCTGGGGCGGGTGGGCTTCCCTCAGGCCTTCCCG,3' UTR,2,25291181,25319095,27915,2,Grin1-203,27099,Grin1-203;Grin1-204;Grin1-207;Grin1-208;Grin1-201;Grin1-202;Grin1-206;Grin1-205;Grin1-209;Grin1-210;Lrrc26-201;Tmem210-201;Tmem210-202,Grin1;Grin1;Grin1;Grin1;Grin1;Grin1;Grin1;Grin1;Grin1;Grin1;Lrrc26;Tmem210;Tmem210,0;0;0;0;0;0;0;0;0;0;2032;3802;3746,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,7,14810,ENSMUSG00000026959,conserved gene and region,2,25291829,25292106,278,*,278,16,0.715827338,0.450658561,0.057553957,7.61E-09,CpGisland,TRUE,U13,Hc-P
24192,cg27573301,-0.0000144,0.00000365,-3.954614317,0.000095,loss,ns,-0.00000448,0.0000062,-0.722877753,0.470300012,neg,ns,-0.001135553,0.001816625,-0.625089412,0.532372222,neg,ns,0.273784613,0.0000586,0.0000625,0.937729872,0.349113244,pos,ns,0.914284888,Tnrc6a,Tnrc6a_Exon,7,123192149,123192198,123192149,123192150,50,+,CGCTACAGTTCAAAAGAAGAGGTAGTGAAGGCACAAAAGTCTCTGCACAT,"Exon (Tnrc6a-201/Tnrc6a, exon 23 of 24)",7,123124177,123193987,69811,1,Tnrc6a-203,67972,Tnrc6a-203;Tnrc6a-201;Tnrc6a-205;Tnrc6a-208,Tnrc6a;Tnrc6a;Tnrc6a;Tnrc6a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,17,24,233833,ENSMUSG00000052707,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24077,cg14523803,0.0000194,0.00000872,2.22528835,0.026781116,gain,ns,0.0000107,0.0000148,0.722876292,0.470300909,pos,ns,0.009878779,0.004338913,2.276786709,0.023480253,pos,ns,1.629297223,-0.0000717,0.000149215,-0.480509783,0.631203862,neg,ns,0.260344807,Zic5,Zic5_Intergenic_downstream,14,122453394,122453443,122453394,122453395,50,-,CGAGTTGCCTTTTCAATGAAATCCCCCCGCGATCCTTGAAAACGGAGTTT,Distal Intergenic,14,122459193,122460021,829,2,Zic5-202,6627,Zic5-201,Zic5,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,14,26,65100,ENSMUSG00000041703,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
13695,cg20391867,0.0000103,0.00000475,2.16070474,0.031483922,gain,ns,-0.00000583,0.00000806,-0.722823569,0.470333257,neg,ns,-0.003123784,0.002361689,-1.322690423,0.186913265,neg,ns,0.728359875,0.000177753,0.0000812,2.188588188,0.029372641,pos,ns,0.106675243,Rab8a,Rab8a_fiveUTR,8,72161342,72161391,72161342,72161343,50,-,CGGGGAGAGAGTGTAATATGGCGAAGACCTACGATTACCTGTTCAAGCTG,Promoter (<=1kb),8,72161359,72176057,14699,1,Rab8a-202,0,Rab8a-201;Rab8a-203;Rab8a-202,Rab8a;Rab8a;Rab8a,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,5,17274,ENSMUSG00000003037,conserved gene but different region,8,72161136,72161662,527,*,527,47,0.669829222,0.805967721,0.089184061,1.73E-33,CpGisland,TRUE,U1,Pr-A
15836,cg07866089,0.00000334,0.00000341,0.980733243,0.327489067,gain,ns,0.00000418,0.00000579,0.72245009,0.470562445,pos,ns,0.001091914,0.001696853,0.643493962,0.520379372,pos,ns,0.283679928,0.0000363,0.0000584,0.621953144,0.534429825,pos,ns,0.941302533,Scube1,Scube1_Exon,15,83651669,83651718,83651669,83651670,50,+,CGTTTCACCCGCTTGTCCACATCAGCTACTGACGTGGCATTGAACTGAGA,"Exon (Scube1-201/Scube1, exon 7 of 23)",15,83604999,83725021,120023,2,Scube1-204,73303,Scube1-204;Scube1-202;Scube1-201;Scube1-203;Scube1-205;Scube1-206,Scube1;Scube1;Scube1;Scube1;Scube1;Scube1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,8,64706,ENSMUSG00000016763,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11507,cg00957001,-0.00000406,0.00000396,-1.025781945,0.305794128,loss,ns,0.00000486,0.00000673,0.722319015,0.470642894,pos,ns,-0.000764527,0.001970409,-0.388004094,0.698279303,neg,ns,0.15597083,0.00000114,0.0000678,0.016829923,0.986583125,pos,ns,0.928468362,Nptn,Nptn_Exon,9,58618980,58619029,58618980,58618981,50,-,CGAGCCCAGGCCACCATAAGCGTCCTTCAGAGTGAGTCCAGCACCCTACA,"Exon (Nptn-212/Nptn, exon 2 of 8)",9,58582240,58651318,69079,1,Nptn-212,36740,Nptn-212;Nptn-201;Nptn-213;Nptn-206;Nptn-203;Nptn-202;Nptn-211;Nptn-207;Nptn-204,Nptn;Nptn;Nptn;Nptn;Nptn;Nptn;Nptn;Nptn;Nptn,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,20,22,20320,ENSMUSG00000032336,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19163,cg19547516,0.0000062,0.00000409,1.516115655,0.130509119,gain,ns,0.00000502,0.00000695,0.722273546,0.470670803,pos,ns,-0.000226196,0.002034905,-0.111157782,0.911563163,neg,ns,0.040213234,-0.0000113,0.00007,-0.1612567,0.871996266,neg,ns,0.920978407,Gm32308,Gm32308_Intergenic_upstream,6,98716211,98716260,98716211,98716212,50,-,CGAGTATCTGCTTCCTCGACAATCTTATGTTTAAAGATGTGTGTTGAGCT,Distal Intergenic,6,98757749,98758028,280,1,Gm32308-201,-41538,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,10,102634810,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12756,cg07921922,0.0000136,0.00000307,4.439935373,0.0000125,gain,ns,-0.00000377,0.00000522,-0.721943521,0.470873403,neg,ns,0.001124766,0.001529464,0.735399062,0.462652498,pos,ns,0.334745088,0.000109568,0.0000526,2.083117459,0.038059731,pos,ns,0.066156747,Phox2b,Phox2b_Promoter,5,67098562,67098611,67098562,67098563,50,+,CGTGATAAATTCTTTCATTTGTGTAAGCAAATTTCGTTTGGTAAATACTA,Promoter (<=1kb),5,67094399,67099301,4903,2,Phox2b-201,690,Phox2b-201;Phox2b-202,Phox2b;Phox2b,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,13,28,18935,ENSMUSG00000012520,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
13003,cg05484434,0.00000904,0.00000571,1.583386932,0.114352917,gain,ns,0.000007,0.0000097,0.721834678,0.470940231,pos,ns,0.010806386,0.002842101,3.802252507,0.000172658,pos,ns,3.762813136,-0.000231309,0.0000977,-2.366587241,0.018567366,neg,ns,0.096237531,Erbb4,Erbb4_Intron,1,69105087,69105136,69105135,69105136,50,+,CGTTTCCTTAATTTGTTTCATCTAAAAGCAATTCACTCAACATCTTGTCG,"Intron (Erbb4-201/Erbb4, intron 1 of 27)",1,68032186,69107756,1075571,2,Erbb4-201,2620,Erbb4-201;Erbb4-202;Erbb4-205,Erbb4;Erbb4;Erbb4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,13,13869,ENSMUSG00000062209,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
4248,cg16168901,-0.00000556,0.00000312,-1.785994495,0.075077465,loss,ns,0.00000382,0.00000529,0.721795162,0.470964494,pos,ns,-0.002700283,0.001550654,-1.741383399,0.082608394,neg,ns,1.082975822,0.0000276,0.0000533,0.517334477,0.605291624,pos,ns,0.91804311,Opcml,Opcml_Intron,9,27945796,27945845,27945796,27945797,50,-,CGGCATCCACACAGCTGGCCATTAATTGGAGGCCAGAGCTTGATTAATGA,"Intron (Opcml-202/Opcml, intron 1 of 7)",9,27790947,28925410,1134464,1,Opcml-202,154849,Opcml-202;Opcml-203,Opcml;Opcml,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,12,330908,ENSMUSG00000062257,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22879,cg01981662,-0.0000338,0.0000139,-2.434770624,0.015465137,loss,ns,-0.000017,0.0000236,-0.721669503,0.471041656,neg,ns,0.007078577,0.006918155,1.023188584,0.30701647,pos,ns,0.512838326,-0.000247507,0.000237915,-1.040318006,0.299002863,neg,ns,0.648800551,Meis2,Meis2_Exon,2,116061556,116061605,116061604,116061605,50,-,CTCAAAGACCAGAGCTAACAGAGGAAACAACGGGTGCCTAACGGGCAGCG,"Exon (Meis2-201/Meis2, exon 3 of 12)",2,115863064,116065047,201984,2,Meis2-201,3442,Meis2-201;Meis2-203;Meis2-205;Meis2-206;Meis2-204;Meis2-202;Meis2-213;Meis2-210;Meis2-209;Meis2-212,Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2,0;0;0;0;0;0;0;0;0;-2714,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,15,97,17536,ENSMUSG00000027210,conserved gene but different region,2,116061432,116061626,195,*,195,18,0.615384615,0.976084538,0.092307692,2.11E-13,CpGisland,TRUE,NA,NRS
10789,cg09682305,0.000128877,0.0000122,10.59264321,1.40E-22,gain,yes,-0.0000149,0.0000207,-0.721260197,0.471293042,neg,ns,0.019139313,0.00605549,3.160654817,0.001729671,pos,ns,2.762036612,-0.000496293,0.000208248,-2.383187285,0.017765532,neg,ns,0.138670023,Kcnj3,Kcnj3_Exon,2,55437467,55437516,55437515,55437516,50,+,CACCTACACCGTGGCCTGGCTTTTCATGGCGTCCATGTGGTGGGTGATCG,"Exon (Kcnj3-201/Kcnj3, exon 2 of 4)",2,55435970,55598145,162176,1,Kcnj3-201,1497,Kcnj3-201;Kcnj3-203;Kcnj3-202,Kcnj3;Kcnj3;Kcnj3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,6,16519,ENSMUSG00000026824,conserved gene and region,2,55437146,55437552,407,*,407,28,0.587223587,0.798151002,0.068796069,4.81E-17,CpGisland,TRUE,U13,Hc-P
10031,cg06679388,0.00000527,0.0000065,0.811181017,0.417884083,gain,ns,-0.00000796,0.000011,-0.721248553,0.471300194,neg,ns,0.011363408,0.003234755,3.512910917,0.000509162,pos,ns,3.293143764,-0.000453156,0.000111243,-4.073572769,0.0000589,neg,ns,0.114670392,Maml3,Maml3_Intron,3,52046233,52046282,52046281,52046282,50,+,AATAAAACTCTTAACTTCTCTGCCAATGAGCTCTGCCAGGCCTGATGACG,"Intron (Maml3-202/Maml3, intron 1 of 4)",3,51685907,52105076,419170,2,Maml3-202,58794,Maml3-202,Maml3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,32,433586,ENSMUSG00000061143,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14305,cg13971986,-0.0000243,0.00000582,-4.173066503,0.0000391,loss,ns,-0.00000713,0.00000988,-0.721188853,0.471336868,neg,ns,-0.000989155,0.00289527,-0.341645159,0.73284942,neg,ns,0.134985251,-0.000187833,0.0000996,-1.886473619,0.060165624,neg,ns,0.78270235,Smg6,Smg6_Intron,11,75140443,75140492,75140443,75140444,50,-,CGGAAGCGATTCTAGCCAGGGGCCAGGTCACCCATAGGCCAACACAGTCA,"Intron (Smg6-201/Smg6, intron 14 of 18)",11,74925823,75164448,238626,1,Smg6-201,214620,Smg6-201;Smg6-202;Smg6-204;Smg6-205,Smg6;Smg6;Smg6;Smg6,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,34,103677,ENSMUSG00000038290,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U5,En-Sd
1626,cg10945567,-0.00000374,0.00000158,-2.365231353,0.018634244,loss,ns,-0.00000194,0.00000268,-0.721139313,0.471367301,neg,ns,-0.000868845,0.000786177,-1.105151413,0.269950972,neg,ns,0.568715104,0.0000173,0.000027,0.640094857,0.522583731,pos,ns,0.96352072,Zfp521,Zfp521_Intron,18,13897302,13897351,13897350,13897351,50,+,GCCGATATTAAATCCAACTTCTGCTCATATCAGGGTATTAGTGATGTACG,"Intron (Zfp521-201/Zfp521, intron 3 of 7)",18,13687013,13972787,285775,2,Zfp521-201,75436,Zfp521-201;Zfp521-204;Zfp521-203;Zfp521-202,Zfp521;Zfp521;Zfp521;Zfp521,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,81,225207,ENSMUSG00000024420,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14580,cg17483317,0.0000222,0.00000371,5.97564036,6.29E-09,gain,yes,-0.00000454,0.0000063,-0.721076823,0.47140569,neg,ns,0.001862165,0.001845751,1.008892961,0.313812793,pos,ns,0.503329355,-0.0000589,0.0000635,-0.928122023,0.354066349,neg,ns,0.903464586,Sptb,Sptb_Exon,12,76632375,76632424,76632423,76632424,50,+,TTTACCAGCATCTCTCCAGAGAGCACCTCCAGCAGCTTGATGAGCATGCG,"Exon (Sptb-201/Sptb, exon 3 of 36)",12,76580488,76710547,130060,2,Sptb-201,78123,Sptb-201;Sptb-202,Sptb;Sptb,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,6,20741,ENSMUSG00000021061,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9927,cg23732735,-0.00000329,0.00000369,-0.892087709,0.373037843,loss,ns,-0.00000452,0.00000626,-0.721022941,0.471438793,neg,ns,-0.005478896,0.0018347,-2.986262907,0.003049237,neg,ns,2.515808759,0.000074,0.0000631,1.17354495,0.241478191,pos,ns,0.881760465,Hnrnpab,Hnrnpab_Exon,11,51601819,51601868,51601819,51601820,50,-,CGTAGCCCTGCTGGTAGCCGTAGCCCTGGTTCCAGTAGTTGCCGTAGCCC,"Exon (Hnrnpab-202/Hnrnpab, exon 7 of 7)",11,51600100,51606847,6748,2,Hnrnpab-201,4979,Hnrnpab-201;Hnrnpab-202;Hnrnpab-203;Phykpl-202;Phykpl-206;Phykpl-201;Phykpl-204;Phykpl-208,Hnrnpab;Hnrnpab;Hnrnpab;Phykpl;Phykpl;Phykpl;Phykpl;Phykpl,0;0;0;0;0;17030;17016;2552,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,15384,ENSMUSG00000020358,conserved gene and region,11,51601756,51601862,107,*,107,11,0.654205608,0.961601307,0.102803738,7.87E-09,CpGisland,TRUE,U10,Tr-S
9791,cg07680301,0.0000232,0.00000631,3.683698919,0.000271172,gain,ns,-0.00000773,0.0000107,-0.720967971,0.471472566,neg,ns,0.003443714,0.003140763,1.096457594,0.273729598,pos,ns,0.56267824,-0.000078,0.000108011,-0.722554208,0.470498546,neg,ns,0.036751067,Trps1,Trps1_Promoter,15,50889451,50889500,50889499,50889500,50,+,TTTTTTTTTTTCAAAGAAAGTCACTTTTAATTCCCAGGGCTCCCCGCTCG,Promoter (<=1kb),15,50654752,50889691,234940,2,Trps1-202,191,Trps1-202;Trps1-206;Trps1-204;Trps1-205;Trps1-201;Trps1-208,Trps1;Trps1;Trps1;Trps1;Trps1;Trps1,0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,9,36,83925,ENSMUSG00000038679,conserved gene and region,15,50889495,50889675,181,*,181,26,0.718232044,1.135617761,0.143646409,1.20E-24,CpGisland,TRUE,U1,Pr-A
18835,cg26051591,-0.000109951,0.000017,-6.468206535,3.86E-10,loss,yes,-0.0000208,0.0000289,-0.720957904,0.471478751,neg,ns,0.033156952,0.008460443,3.919056254,0.000109432,pos,ns,3.960853942,-0.001939029,0.000290954,-6.66438608,1.21E-10,neg,yes,0.302192363,E130114P18Rik,E130114P18Rik_Intron,4,97610428,97610477,97610476,97610477,50,+,ATTCCAAAAACACCATCTGGTATTTGGGAATGCACTGTGAGTTGGGAACG,"Intron (E130114P18Rik-204/E130114P18Rik, intron 3 of 5)",4,97568133,97778048,209916,2,E130114P18Rik-204,167571,E130114P18Rik-204;E130114P18Rik-209,E130114P18Rik;E130114P18Rik,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,24,319865,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24784,cg10370659,0.0000313,0.00000483,6.488076897,3.44E-10,gain,yes,-0.00000591,0.0000082,-0.720929519,0.471496191,neg,ns,0.003043338,0.002402161,1.266916716,0.20613606,pos,ns,0.685846029,-0.000266257,0.0000826,-3.223058767,0.001403321,neg,ns,0.05348712,Smarcc2,Smarcc2_Promoter,10,128458480,128458529,128458480,128458481,50,-,CGAACCTGTGCGGGGAAACCCCATTGGATTTCGAGTCCAACGCCTTAACC,Promoter (<=1kb),10,128459248,128490482,31235,1,Smarcc2-205,-768,Smarcc2-205;Smarcc2-201;Smarcc2-202;Smarcc2-203;Smarcc2-206,Smarcc2;Smarcc2;Smarcc2;Smarcc2;Smarcc2,0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,6,16,68094,ENSMUSG00000025369,conserved gene and region,10,128458453,128458841,389,*,389,38,0.645244216,0.938658877,0.097686375,9.20E-29,CpGisland,TRUE,U2,Pr-W
10314,cg02600653,0.0000139,0.00000491,2.820111146,0.005109998,gain,ns,-0.00000602,0.00000835,-0.72091745,0.471503606,neg,ns,0.001770117,0.002444918,0.723998454,0.469612687,pos,ns,0.328260179,-0.0000783,0.0000841,-0.931706205,0.352213413,neg,ns,0.882977955,Kcnh8,Kcnh8_Exon,17,52834559,52834608,52834559,52834560,50,-,CGAACAACTTATGTCAGCAAGTCTGGCCAAGTTATCTTTGAAGCAAGATC,"Exon (Kcnh8-201/Kcnh8, exon 6 of 16)",17,52602709,52979194,376486,1,Kcnh8-201,231850,Kcnh8-201,Kcnh8,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,8,211468,ENSMUSG00000035580,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17524,cg22073028,-0.00000899,0.000003,-2.992163483,0.002992554,loss,ns,-0.00000368,0.0000051,-0.720687951,0.471644626,neg,ns,0.001383038,0.001494796,0.925235263,0.355563225,pos,ns,0.449083163,-0.000121079,0.0000514,-2.355343457,0.019128393,neg,ns,0.940942899,Nrxn1,Nrxn1_Exon,17,90701927,90701976,90701927,90701928,50,-,CGGCAAACCCAAAATAAGAAACAATTAGAATGATATCTACCGAACAATGT,"Exon (Nrxn1-209/Nrxn1, exon 6 of 22)",17,90033631,91088907,1055277,2,Nrxn1-202,386931,Nrxn1-202;Nrxn1-207;Nrxn1-216;Nrxn1-209;Nrxn1-201;Nrxn1-206;Nrxn1-208;Nrxn1-210;Nrxn1-224;Nrxn1-205;Nrxn1-203,Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,22,27,18189,ENSMUSG00000024109,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10557,cg09790219,0.0000171,0.000011,1.547485601,0.122766434,gain,ns,-0.0000135,0.0000188,-0.720567822,0.471718451,neg,ns,-0.015038828,0.005494537,-2.737051116,0.006557085,neg,ns,2.183289164,0.000134765,0.000188957,0.713206217,0.476254699,pos,ns,0.655968394,Acsl6,Acsl6_Exon,11,54336924,54336973,54336924,54336925,50,-,CGTCGCCTGCAGAAAGTGATCTTTCCGAGACAGGACGATGTGCTCATCTC,"Exon (Acsl6-204/Acsl6, exon 11 of 21)",11,54303798,54364756,60959,1,Acsl6-204,33126,Acsl6-204;Acsl6-201;Acsl6-209;Acsl6-210;Acsl6-203;Acsl6-206;Acsl6-207;Acsl6-202;Acsl6-208;Acsl6-205;Acsl6-215;Acsl6-211,Acsl6;Acsl6;Acsl6;Acsl6;Acsl6;Acsl6;Acsl6;Acsl6;Acsl6;Acsl6;Acsl6;Acsl6,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,216739,ENSMUSG00000020333,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23466,cg00887670,-0.000000358,0.00000163,-0.219771282,0.826193932,loss,ns,0.000002,0.00000277,0.720529786,0.471741827,pos,ns,0.00101237,0.000811742,1.247156522,0.213281507,pos,ns,0.6710468,-0.0000264,0.0000279,-0.946039342,0.344865326,neg,ns,0.951148231,Clasp1,Clasp1_Exon,1,118531977,118532026,118532025,118532026,50,+,GCACGGAGCAGCCGTATCCCTCGACCCAGCATGAGTCAGGGGTGCAGCCG,"Exon (Clasp1-201/Clasp1, exon 23 of 40)",1,118389058,118609432,220375,1,Clasp1-201,142919,Clasp1-201;Clasp1-202;Clasp1-204;Clasp1-218;Clasp1-219;Clasp1-208;Clasp1-216;Clasp1-203;Clasp1-214;Clasp1-220;Clasp1-212;Clasp1-206;Clasp1-205;Clasp1-210;Clasp1-224;Clasp1-221;Clasp1-230;Clasp1-226;Clasp1-213,Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,8,76707,ENSMUSG00000064302,conserved gene and region,1,118531972,118532107,136,*,136,13,0.661764706,0.876984127,0.095588235,5.64E-10,CpGisland,TRUE,U10,Tr-S
26902,cg10245372,0.000098,0.000016,6.114230556,2.92E-09,gain,yes,-0.0000196,0.0000272,-0.72043372,0.471800871,neg,ns,0.026649312,0.007974001,3.34202528,0.000933514,pos,ns,3.029879008,-0.000931779,0.000274225,-3.397861621,0.000767822,neg,ns,0.386109026,Prdm16,Prdm16_Intron,4,154499930,154499979,154499978,154499979,50,-,TTGTGTGAGTAATTTAGCGCTGTGGCCAGTCAATCTGGTTTCTGGGCCCG,"Intron (Prdm16-201/Prdm16, intron 2 of 16)",4,154316125,154636866,320742,2,Prdm16-201,136887,Prdm16-201;Prdm16-202;Prdm16-203;Prdm16-204;Prdm16-205;Prdm16-206;Prdm16-210;Prdm16-207;Prdm16-209;Prdm16-212,Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,32,70673,ENSMUSG00000039410,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10439,cg19893485,-0.00000642,0.00000587,-1.093393212,0.275070099,loss,ns,0.00000719,0.00000998,0.720426486,0.471805317,pos,ns,0.000522244,0.002922585,0.178692384,0.858295974,pos,ns,0.066362924,-0.000209392,0.000100507,-2.083350138,0.038038377,neg,ns,0.774243142,Septin8,Septin8_Exon,11,53548320,53548369,53548320,53548321,50,-,CGGGCATGAGCCTCTCCAGCTCTAAGGTGATGATGACCAAGGCCAGTGTG,"Exon (Septin8-204/Septin8, exon 10 of 10)",11,53519770,53549565,29796,1,Septin8-204,28550,Septin8-201;Septin8-204;Septin8-202,Septin8;Septin8;Septin8,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,9,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9968,cg21132526,-0.00000944,0.00000371,-2.542999439,0.011476367,loss,ns,-0.00000454,0.00000631,-0.72031919,0.471871268,neg,ns,0.001943776,0.001848387,1.051606587,0.293799124,pos,ns,0.531949503,-0.000164672,0.0000636,-2.590572966,0.010034418,neg,ns,0.925114839,Satb1,Satb1_Intron,17,51761485,51761534,51761485,51761486,50,+,CGACAGTTCAGCACAAGATCAGTGACATTCTGTCTCATTAGAACCACGCT,"Intron (Satb1-208/Satb1, intron 9 of 10)",17,51736187,51832672,96486,2,Satb1-208,71138,Satb1-208;Satb1-213;Satb1-204;Satb1-214;Satb1-203;Satb1-211;Satb1-207,Satb1;Satb1;Satb1;Satb1;Satb1;Satb1;Satb1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,28,36,20230,ENSMUSG00000023927,conserved gene and region,17,51761281,51761486,206,*,206,11,0.509708738,0.825801749,0.053398058,0.00000611,CpGisland,TRUE,U15,NS
26058,cg05885555,-0.00000292,0.00000231,-1.266687558,0.206217912,loss,ns,0.00000282,0.00000392,0.720145746,0.471977888,pos,ns,-0.001181704,0.001148468,-1.028939112,0.304310428,neg,ns,0.516683165,-0.000007,0.0000395,-0.17732284,0.859370615,neg,ns,0.950919204,Gm2505,Gm2505_Intergenic_upstream,3,143465928,143465977,143465976,143465977,50,+,ATTTAATGTTGGAAGAGTTTATTAAACTGCCACATTCTAATCAGCATGCG,Distal Intergenic,3,143872995,143873819,825,1,Gm2505-201,-407018,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,37,100039938,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19990,cg09111246,-0.00000552,0.0000028,-1.974535788,0.049208081,loss,ns,-0.00000342,0.00000475,-0.720007864,0.472062656,neg,ns,-0.000922636,0.001392546,-0.662553075,0.508109115,neg,ns,0.294043014,-0.0000632,0.0000479,-1.319530801,0.187965408,neg,ns,0.932556661,Ephb1,Ephb1_Exon,9,101984093,101984142,101984141,101984142,50,+,ACCTCTTCAATTTTCACAAAAGATACATCAATCTCCTTGGCAAACTCCCG,"Exon (Ephb1-201/Ephb1, exon 10 of 16)",9,101922128,102354693,432566,2,Ephb1-201,370551,Ephb1-201;Ephb1-202,Ephb1;Ephb1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,7,270190,ENSMUSG00000032537,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6903,cg06242209,0.0000323,0.0000172,1.875180971,0.061707739,gain,ns,-0.0000211,0.0000293,-0.720001546,0.472066541,neg,ns,0.022418183,0.008582645,2.612036794,0.009438655,pos,ns,2.025089866,-0.000693702,0.000295156,-2.350287022,0.019385509,neg,ns,0.445558462,Gm5195,Gm5195_Intergenic_upstream,13,39411804,39411853,39411804,39411805,50,+,CGGGCACTTAAGCAGCTAGGCTGATGGTCCCTAATGAAATCAAATAAAAT,Distal Intergenic,13,39757308,39757967,660,1,Gm5195-201,-345455,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,4,382747,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15083,cg05373603,0.0000347,0.00000396,8.746356281,1.43E-16,gain,yes,0.00000485,0.00000673,0.719913866,0.47212045,pos,ns,0.000121038,0.001971926,0.061380735,0.951095549,pos,ns,0.021775851,0.000200348,0.0000678,2.954364477,0.00337307,pos,ns,0.123110788,Zfp827,Zfp827_Promoter,8,79028795,79028844,79028795,79028796,50,+,CGCAGCCTCCTCCGTTGTTTTCTGCATTAGTTTAGGGTTACAGAGGTGAA,Promoter (<=1kb),8,79028437,79071837,43401,1,Zfp827-201,358,Zfp827-201;Zfp827-202;Zfp827-203;Zfp827-209,Zfp827;Zfp827;Zfp827;Zfp827,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,10,28,622675,ENSMUSG00000071064,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
24607,cg03068431,-0.0000156,0.00000444,-3.523861341,0.000489358,loss,ns,-0.00000543,0.00000754,-0.719881149,0.472140567,neg,ns,0.000571833,0.002209459,0.258811474,0.795952468,pos,ns,0.099112867,-0.000152773,0.000076,-2.0106195,0.045231343,neg,ns,0.826243821,Dtx3,Dtx3_Exon,10,127193305,127193354,127193353,127193354,50,-,TTTGTTCTTGCAGGTGCCTCCACAGGCTGCCATTCTGGACAGGACGAACG,"Exon (Dtx3-201/Dtx3, exon 4 of 6)",10,127190378,127195709,5332,2,Dtx3-201,2355,Arhgef25-210;Arhgef25-205;Arhgef25-201;Arhgef25-202;Arhgef25-212;Arhgef25-204;Arhgef25-207;Dtx3-201;Dtx3-204;Dtx3-202;Dtx3-205;Dtx3-206;Dtx3-203;Pip4k2c-201,Arhgef25;Arhgef25;Arhgef25;Arhgef25;Arhgef25;Arhgef25;Arhgef25;Dtx3;Dtx3;Dtx3;Dtx3;Dtx3;Dtx3;Pip4k2c,0;0;0;0;0;0;0;0;0;0;0;0;2365;18201,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,80904,ENSMUSG00000040415,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27803,cg11013583,0.0000827,0.0000105,7.885088451,5.41E-14,gain,yes,-0.0000128,0.0000178,-0.719844237,0.472163263,neg,ns,0.013189441,0.005221326,2.526071143,0.012032409,pos,ns,1.919647421,-0.00043398,0.000179561,-2.416897383,0.016230512,neg,ns,0.074028016,Esrrg,Esrrg_Intron,1,187651830,187651879,187651878,187651879,50,-,AAACAGACAGGCATCATGACGTCCTGGGTCACAGGGAGTGCGGACCGACG,"Intron (Esrrg-204/Esrrg, intron 2 of 3)",1,187608791,188043502,434712,1,Esrrg-204,43039,Esrrg-204;Esrrg-203;Esrrg-205,Esrrg;Esrrg;Esrrg,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,60,26381,ENSMUSG00000026610,conserved gene and region,1,187651849,187652122,274,*,274,39,0.791970803,0.908210097,0.142335766,1.22E-36,CpGisland,TRUE,U2,Pr-W
20661,cg01016328,-0.00000392,0.00000363,-1.081030831,0.280523653,loss,ns,-0.00000444,0.00000617,-0.719750422,0.472220952,neg,ns,-0.002739856,0.001806639,-1.516548925,0.130399646,neg,ns,0.884723587,-0.0000401,0.0000621,-0.645323449,0.519194925,neg,ns,0.902340652,Adamts6,Adamts6_threeUTR,13,104375682,104375731,104375682,104375683,50,-,CGTGACTTTCTTTATCCAGCTGTGGCCCCAGGTCAGGTGTATGATGCTGA,3' UTR,13,104287835,104496695,208861,1,Adamts6-207,87847,Adamts6-207;Adamts6-202;Adamts6-201;Adamts6-206;Adamts6-203;Adamts6-204;Adamts6-205,Adamts6;Adamts6;Adamts6;Adamts6;Adamts6;Adamts6;Adamts6,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,19,31,108154,ENSMUSG00000046169,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3968,cg13959241,-0.0000597,0.00000818,-7.293958049,2.53E-12,loss,yes,-0.00001,0.0000139,-0.719706909,0.47224771,neg,ns,0.01465764,0.004073019,3.598716532,0.000372132,pos,ns,3.429302401,-0.000364603,0.000140071,-2.602988292,0.009685834,neg,ns,0.763128504,Nacc2,Nacc2_Exon,2,26061225,26061274,26061225,26061226,50,+,CGAACAGATGGCAAAGGCTCAAAATAACCGCAAAATGTAAATAAGGGGTT,"Exon (Nacc2-203/Nacc2, exon 2 of 2)",2,26055535,26092177,36643,2,Nacc2-202,30903,Nacc2-202;Nacc2-201;Nacc2-203;Nacc2-208;Nacc2-204,Nacc2;Nacc2;Nacc2;Nacc2;Nacc2,0;0;0;30545;29101,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,4,67991,ENSMUSG00000026932,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15240,cg10497423,-0.0000145,0.00000676,-2.15029573,0.032304947,loss,ns,-0.00000827,0.0000115,-0.71970331,0.472249923,neg,ns,-0.007780446,0.003366455,-2.3111687,0.021479267,neg,ns,1.667980533,0.0000223,0.000115772,0.192505383,0.8474724,pos,ns,0.880346448,Gm18605,Gm18605_Intron,14,79882617,79882666,79882665,79882666,50,+,ATATTTAAAGATTTTTGTTCCACCTGCCTGCGAAATATAGAGTCCAGCCG,"Intron (Gm6999-201/Gm6999-201, intron 1 of 4)",14,79947657,79948279,623,1,Gm18605-201,-64991,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,6,100417424,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1189,cg16631329,0.0000501,0.0000109,4.603205629,0.00000608,gain,ns,0.0000133,0.0000185,0.7196171,0.47230294,pos,ns,0.023418631,0.005418138,4.322265075,0.0000208,pos,ns,4.681250193,-0.000581172,0.000186329,-3.119060333,0.001984727,neg,ns,0.586028766,Gm14512,Gm14512_Intergenic_downstream,X,12001473,12001522,12001521,12001522,50,+,ATCGGTAACCCCCATGATTAATTCATAACTCTCCACTGCGCCTGGCACCG,Distal Intergenic,20,11984468,11984697,230,1,Gm14512-201,17005,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,22,22,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
2182,cg26951921,-0.0000248,0.00000786,-3.157207873,0.001749596,loss,ns,-0.00000961,0.0000134,-0.71961162,0.47230631,neg,ns,-0.006603839,0.003914057,-1.687210687,0.092568737,neg,ns,1.033535659,-0.0000151,0.000134604,-0.112341845,0.910625074,neg,ns,0.847185824,Defb41,Defb41_Intergenic_upstream,1,18307755,18307804,18307755,18307756,50,-,CGAACACAGAAAACACAGGAGGAAAATGAGCTGTCACTCCAATTCCCATG,Distal Intergenic,1,18250980,18265138,14159,2,Defb41-201,-42666,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,6,77673,ENSMUSG00000067773,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13741,cg12934146,0.0000163,0.00000783,2.08529255,0.037860515,gain,ns,-0.00000957,0.0000133,-0.719577366,0.472327377,neg,ns,0.000214545,0.003895099,0.055080871,0.956109517,pos,ns,0.019492359,0.0000266,0.000133952,0.198351604,0.842899993,pos,ns,0.076917703,Dcc,Dcc_Exon,18,72350374,72350423,72350374,72350375,50,-,CGCTGAACAAGGAAGCTCCGAAGAGTACAAAAGCCAGCTTGGGTACCCAA,Promoter (<=1kb),18,71253634,72351069,1097436,2,Dcc-202,646,Dcc-202;Dcc-201;Dcc-203,Dcc;Dcc;Dcc,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,4,13176,ENSMUSG00000060534,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
25001,cg16983086,-0.0000112,0.00000429,-2.602885615,0.009688672,loss,ns,-0.00000525,0.00000729,-0.719490875,0.472380572,neg,ns,0.0000872,0.002136269,0.040811318,0.967472588,pos,ns,0.014361331,-0.000120474,0.0000735,-1.639853619,0.102049918,neg,ns,0.936508102,Fgfr2,Fgfr2_Intron,7,131495123,131495172,131495123,131495124,50,+,CGAACATGATTGCATTGTAGTTTTTCCAAGGGTGAAATTTACAAACGATT,"Intron (Fgfr2-217/Fgfr2, intron 2 of 6)",7,130162451,133123350,2960900,2,Fgfr2-217,1628178,Fgfr2-217;Gm45105-201,Fgfr2;Gm45105,0;-1220,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,58,79,14183,ENSMUSG00000030849,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2000,cg04069056,0.0000122,0.00000409,2.972842578,0.003181842,gain,ns,-0.000005,0.00000695,-0.719451437,0.472404828,neg,ns,0.001081805,0.002036994,0.531078992,0.595744329,pos,ns,0.224940083,0.000095,0.0000701,1.355563786,0.176224753,pos,ns,0.913942239,Gm47736,Gm47736_Intron,10,16974095,16974144,16974143,16974144,50,-,AGACCATGAACACCTTTTTAAATGCTATTTTTCAAGGCTGAGAGCAAGCG,"Intron (Gm20125-204/Gm20125-204, intron 5 of 12)",10,16796973,16797898,926,1,Gm47736-201,177171,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11831,cg21823557,-0.0000218,0.00000733,-2.97915888,0.003118787,loss,ns,-0.00000895,0.0000124,-0.719346092,0.472469625,neg,ns,0.001488866,0.003646347,0.40831719,0.68332271,pos,ns,0.165374145,-0.000330788,0.000125398,-2.637914626,0.008762655,neg,ns,0.737022046,Slc6a7,Slc6a7_Exon,18,61005753,61005802,61005753,61005754,50,-,CGATGACCCAGGCCAGCAGCAGGCAGAGGCAGAGGTTCCAGCGGATCTCC,"Exon (Slc6a7-201/Slc6a7, exon 5 of 14)",18,60995380,61014222,18843,2,Slc6a7-201,8420,Slc6a7-201;Slc6a7-202,Slc6a7;Slc6a7,0;8404,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,240332,ENSMUSG00000052026,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13798,cg23925713,-0.00000898,0.00000469,-1.916901045,0.056169577,loss,ns,-0.00000573,0.00000796,-0.719240519,0.472534568,neg,ns,-0.004197847,0.00233226,-1.799905444,0.072847737,neg,ns,1.137583937,-0.0000372,0.0000802,-0.464134736,0.642876978,neg,ns,0.875525046,Kcmf1,Kcmf1_threeUTR,6,72842806,72842855,72842854,72842855,50,+,GTTGTTGTCCACTTTCATTGGCAAATACAGCACAGAGGACATTGTCTGCG,3' UTR,6,72841114,72899979,58866,2,Kcmf1-201,57124,Kcmf1-201;Kcmf1-204;Kcmf1-206;Kcmf1-202,Kcmf1;Kcmf1;Kcmf1;Kcmf1,0;0;0;6558,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,2,74287,ENSMUSG00000055239,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19521,cg11992992,-0.000000447,0.00000244,-0.182818344,0.855060058,loss,ns,0.00000299,0.00000415,0.719228041,0.472542243,pos,ns,0.003212069,0.001216063,2.641367912,0.008675813,pos,ns,2.061689839,-0.0000884,0.0000418,-2.113392451,0.03536594,neg,ns,0.083271815,Gm20696,Gm20696_Intron,6,99522963,99523012,99522963,99522964,50,+,CGGAGGGAGATGTTGTTATTTTTTGCTGTTGTGCGTCCCTGACGTCACAT,"Intron (Gm20696-201/Gm20696, intron 3 of 5)",6,99257484,99666797,409314,2,Gm20696-201,143785,Foxp1-220;Foxp1-224;Foxp1-227;Foxp1-216;Gm20696-201;Gm20696-203,Foxp1;Foxp1;Foxp1;Foxp1;Gm20696;Gm20696,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,5,,NA,mapped to different genes,6,99522539,99523073,535,*,535,68,0.674766355,1.135881104,0.127102804,1.18E-59,CpGisland,TRUE,U1,Pr-A
755,cg26909613,-0.00000154,0.00000211,-0.727048592,0.467744867,loss,ns,0.00000258,0.00000359,0.719187476,0.472567198,pos,ns,0.002059472,0.001051727,1.958181425,0.05110533,pos,ns,1.291533803,-0.0000789,0.0000362,-2.182249495,0.029841533,neg,ns,0.940278267,Glcci1,Glcci1_threeUTR,6,8591515,8591564,8591563,8591564,50,+,CTAGTTAATATAACTGCTTTAAATTTACAGACAGTGGGAGTAGCTCACCG,3' UTR,6,8509600,8597548,87949,1,Glcci1-201,81915,Glcci1-201;Glcci1-206;Glcci1-202;Glcci1-203;Glcci1-204;Gm16042-201;Gm45062-201,Glcci1;Glcci1;Glcci1;Glcci1;Glcci1;Gm16042;Gm45062,0;0;0;0;0;5425;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,2,170772,ENSMUSG00000029638,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5338,cg26425390,-0.00000191,0.00000246,-0.774854336,0.439016352,loss,ns,0.00000301,0.00000418,0.719155863,0.472586646,pos,ns,0.00047428,0.001224434,0.387346375,0.698765595,pos,ns,0.155668486,-0.0000262,0.0000421,-0.623189044,0.53361851,neg,ns,0.956304739,Zbtb43,Zbtb43_Intergenic_upstream,2,33515926,33515975,33515926,33515927,50,+,CGATCTTATATCCGGCACAATCAGATTTATGGCTCCTGCATCTTATGAAA,Distal Intergenic,2,33454888,33468559,13672,2,Zbtb43-204,-47367,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,6,71834,ENSMUSG00000026788,conserved gene and region,2,33515818,33515949,132,*,132,9,0.583333333,0.933962264,0.068181818,0.00000904,CpGisland,TRUE,NA,NRS
4790,cg21839725,0.00000475,0.00000294,1.617638105,0.106757635,gain,ns,-0.00000359,0.00000499,-0.719108784,0.47261561,neg,ns,-0.001079302,0.001462091,-0.7381906,0.460957089,neg,ns,0.336339501,0.00000252,0.0000503,0.050074403,0.960095346,pos,ns,0.913469691,Kmt2b,Kmt2b_Exon,7,30583384,30583433,30583384,30583385,50,-,CGTGGGCCTGGAGGACCAGGGGAGGCCTCAGGAGATTCATCGGAATCCCA,"Exon (Kmt2b-201/Kmt2b, exon 8 of 37)",7,30568858,30588717,19860,2,Kmt2b-201,5284,Kmt2b-201;Kmt2b-202;Kmt2b-206;Kmt2b-204;Kmt2b-203,Kmt2b;Kmt2b;Kmt2b;Kmt2b;Kmt2b,0;0;0;-4390;1641,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,7,75410,ENSMUSG00000006307,conserved gene and region,7,30583201,30583460,260,*,260,19,0.673076923,0.645414163,0.073076923,3.18E-12,CpGisland,TRUE,U10,Tr-S
1031,cg11714263,-0.0000168,0.00001,-1.674862215,0.094969697,loss,ns,-0.0000122,0.000017,-0.71903858,0.472658802,neg,ns,-0.003716524,0.004984348,-0.74563888,0.456450581,neg,ns,0.340606236,-0.000240146,0.000171411,-1.400994642,0.162215915,neg,ns,0.65604856,Gm8744,Gm8744_Intergenic_downstream,6,11061162,11061211,11061162,11061163,50,-,CGAATTAAGTATTCGCTCTGTAGTGGACCCCTGCTTATCAGCAACCTTGC,Distal Intergenic,6,10882429,10888600,6172,1,Gm8744-201,178782,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,667650,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
557,cg00601070,0.0000609,0.0000134,4.548218602,0.00000777,gain,ns,-0.0000164,0.0000228,-0.719009548,0.472676664,neg,ns,-0.015574464,0.006668392,-2.335565089,0.020151465,neg,ns,1.695693371,0.000929932,0.000229325,4.055074068,0.0000635,pos,ns,0.454980283,Dlx6,Dlx6_Exon,6,6869780,6869829,6869780,6869781,50,-,CGTAGGACCTAAAATTGAAAATTAACCAAAATTATAATGCTGAAAAGAAT,"Exon (Dlx6os1-201/Dlx6os1-201, exon 2 of 3)",6,6863798,6865430,1633,1,Dlx6-204,6031,Dlx6-203;Dlx6-202;Dlx6-201;Dlx6-204,Dlx6;Dlx6;Dlx6;Dlx6,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,36,13396,ENSMUSG00000029754,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
14697,cg12206270,-0.000013,0.00000864,-1.508163581,0.132531098,loss,ns,0.0000106,0.0000147,0.718996523,0.472684678,pos,ns,-0.001509457,0.00430026,-0.35101538,0.725815238,neg,ns,0.139173918,-0.0000578,0.000147886,-0.391146518,0.695957635,neg,ns,0.855025534,Fut8,Fut8_Exon,12,77332130,77332179,77332130,77332131,50,-,CGGCCATGGACTGGTTCCTGGCGTTGGATTATGCTCATTCTTTTTGCCTG,"Exon (Fut8-203/Fut8, exon 5 of 13)",12,77238125,77475985,237861,1,Fut8-203,94005,Fut8-203;Fut8-202;Fut8-204;Fut8-201,Fut8;Fut8;Fut8;Fut8,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,53618,ENSMUSG00000021065,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21385,cg19861150,0.0000829,0.0000163,5.076681771,0.000000664,gain,yes,-0.0000199,0.0000277,-0.718979589,0.472695097,neg,ns,0.029545498,0.008128338,3.634875619,0.000325483,pos,ns,3.487471579,-0.000783191,0.000279533,-2.801785721,0.005401705,neg,ns,0.37758271,Hyal3,Hyal3_fiveUTR,9,107582905,107582954,107582905,107582906,50,-,CGGATGGAGCTGATCCTGAGTACCAGCCCAGCTGAGCTGACTCTGGATCC,5' UTR,9,107580818,107586832,6015,1,Hyal3-202,2087,Hyal1-202;Hyal1-203;Hyal1-201;Hyal1-204;Hyal1-205;Hyal3-202;Hyal3-201;Hyal3-203;Ifrd2-201;Ifrd2-205;Ifrd2-206;Naa80-202;Naa80-203;Naa80-204;Naa80-205;Naa80-206;Naa80-207;Naa80-201,Hyal1;Hyal1;Hyal1;Hyal1;Hyal1;Hyal3;Hyal3;Hyal3;Ifrd2;Ifrd2;Ifrd2;Naa80;Naa80;Naa80;Naa80;Naa80;Naa80;Naa80,5978;5967;5947;5915;3308;0;0;-1798;-4688;-4772;-4803;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,1,109685,ENSMUSG00000036091,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27662,cg18275891,-0.0000241,0.00000457,-5.263951765,0.000000264,loss,yes,-0.00000558,0.00000777,-0.718934327,0.472722946,neg,ns,-0.004593265,0.002275211,-2.018830809,0.044365427,neg,ns,1.352955335,0.0000878,0.0000782,1.122109744,0.262684154,pos,ns,0.956286726,Sdccag8,Sdccag8_Intron,1,176946289,176946338,176946289,176946290,50,+,CGCCTTACTGTGAAATGACATCAGGAACACCTGTAACCTTTGGCTGGCCG,"Intron (Sdccag8-204/Sdccag8, intron 15 of 16)",1,176814660,176956360,141701,1,Sdccag8-204,131629,Sdccag8-204;Sdccag8-201;Sdccag8-203,Sdccag8;Sdccag8;Sdccag8,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,20,76816,ENSMUSG00000026504,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5640,cg06198114,-0.0000481,0.00000567,-8.472355681,9.84E-16,loss,yes,-0.00000693,0.00000964,-0.718779268,0.472818359,neg,ns,-0.003970227,0.002823415,-1.406178993,0.160672544,neg,ns,0.79405833,-0.000049,0.0000971,-0.504997654,0.613919293,neg,ns,0.887683714,Mapkap1,Mapkap1_Intron,2,34453490,34453539,34453490,34453491,50,+,CGCTGTCTTTCCTGACAGCAGTTAAAAAGTATGGTTATAGTAATCAAATT,"Intron (Mapkap1-210/Mapkap1, intron 4 of 4)",2,34406771,34497716,90946,1,Mapkap1-210,46719,Mapkap1-210;Mapkap1-204;Mapkap1-211;Mapkap1-202;Mapkap1-201;Mapkap1-209;Mapkap1-203;Mapkap1-207;Mapkap1-206,Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,59,227743,ENSMUSG00000038696,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23046,cg10331404,0.0000588,0.0000161,3.65261311,0.000304665,gain,ns,0.0000196,0.0000273,0.718740945,0.472841942,pos,ns,0.017923316,0.008006441,2.23861217,0.025890629,pos,ns,1.586857401,-0.000354144,0.000275341,-1.286202345,0.19933225,neg,ns,0.214221793,Ptprn2,Ptprn2_Intron,12,117160719,117160768,117160719,117160720,50,+,CGGCCAGGCATTCATGGGGAAAAATCCATTTTGTTACCACGCGAAATTAG,"Intron (Ptprn2-204/Ptprn2, intron 12 of 22)",12,116485729,117276849,791121,1,Ptprn2-204,674990,Ptprn2-204;Ptprn2-201,Ptprn2;Ptprn2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,5,19276,ENSMUSG00000056553,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
4175,cg24854385,-0.00000562,0.00000243,-2.314710225,0.021281887,loss,ns,-0.00000296,0.00000412,-0.718730319,0.472848481,neg,ns,-0.001544404,0.001208304,-1.278157968,0.202149923,neg,ns,0.694326419,0.00000165,0.0000416,0.039761718,0.968308692,pos,ns,0.951048046,Sardh,Sardh_Exon,2,27191952,27192001,27191952,27191953,50,+,CGGACATGGCCCACCACTTGGCCGTTCCTCCAGATGGCCTCCAGGCCAAA,"Exon (Sardh-201/Sardh, exon 12 of 13)",2,27188393,27232697,44305,2,Sardh-201,40696,Sardh-201;Sardh-202;Sardh-206;Sardh-210;Sardh-203,Sardh;Sardh;Sardh;Sardh;Sardh,0;0;0;0;26983,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,192166,ENSMUSG00000009614,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5760,cg15852963,0.0000246,0.00000923,2.665587494,0.008088155,gain,ns,0.0000113,0.0000157,0.718691386,0.47287244,pos,ns,0.010940039,0.004593301,2.38173805,0.0178343,pos,ns,1.748743941,-0.000267417,0.000157963,-1.692908297,0.091477563,neg,ns,0.164345363,Sox2,Sox2_Intron,3,34660007,34660056,34660055,34660056,50,+,CAGTCAAAAAGCACCATTCTCCACAATAGACCACACACTGACAGCCAGCG,"Intron (Sox2ot-203/Sox2ot-203, intron 3 of 3)",3,34650405,34652461,2057,1,Sox2-201,9602,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,34,62,20674,ENSMUSG00000074637,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
25426,cg13566279,0.0000583,0.0000181,3.216644117,0.001434024,gain,ns,0.0000221,0.0000308,0.718639094,0.472904621,pos,ns,0.029163609,0.009023111,3.232101268,0.001361072,pos,ns,2.866118763,-0.000213973,0.000310304,-0.689558877,0.490987472,neg,ns,0.17302568,Gm6728,Gm6728_Intergenic_downstream,6,136468446,136468495,136468446,136468447,50,+,CGCCCTAACAAAGAGGCAGAAACTGTGTCTCAACAGCCACCAAATCCAGT,Distal Intergenic,6,136486122,136487186,1065,2,Gm6728-201,18691,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,627022,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U5,En-Sd
16776,cg04751868,-0.00000297,0.00000122,-2.425927703,0.015839729,loss,ns,0.00000149,0.00000208,0.718508723,0.472984859,pos,ns,0.000896505,0.000609146,1.471739337,0.142105703,pos,ns,0.847388493,-0.0000411,0.0000209,-1.964253429,0.050393861,neg,ns,0.059542977,Pcbp1,Pcbp1_Exon,6,86525156,86525205,86525156,86525157,50,-,CGCCGTGCATCATGGCAAAGTGAGACTGTTGTCTTGCCACCTGGTTCAGC,"Exon (Pcbp1-201/Pcbp1, exon 1 of 1)",6,86524492,86526321,1830,2,Pcbp1-201,1116,Pcbp1-201,Pcbp1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,14,15,23983,ENSMUSG00000051695,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
2773,cg03125285,-0.00000445,0.00000501,-0.887445665,0.375526999,loss,ns,-0.00000612,0.00000851,-0.718472465,0.473007176,neg,ns,-0.008700657,0.002494311,-3.4882005,0.000556643,neg,ns,3.254423494,0.00025504,0.0000858,2.973214665,0.003178095,pos,ns,0.100946318,Prdm13,Prdm13_Promoter,4,21688205,21688254,21688253,21688254,50,+,AAAGCAAGGGTGAAACCAATCTAATGTGCCCAGTGGAGCAAGATGGGCCG,Promoter (2-3kb),4,21677481,21685963,8483,2,Prdm13-202,-2242,Prdm13-205;Prdm13-201;Prdm13-202;Prdm13-203;Prdm13-206;Prdm13-204,Prdm13;Prdm13;Prdm13;Prdm13;Prdm13;Prdm13,0;0;0;0;0;-2360,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,19,23,230025,ENSMUSG00000040478,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5994,cg14136214,-0.000016,0.00000437,-3.671678996,0.000283689,loss,ns,0.00000533,0.00000742,0.718436389,0.473029381,pos,ns,-0.00504903,0.00217465,-2.321766488,0.020893345,neg,ns,1.679992023,0.0000202,0.0000748,0.270188823,0.787194774,pos,ns,0.936529353,Dab2ip,Dab2ip_threeUTR,2,35729149,35729198,35729197,35729198,50,-,GAACACAGGGGCCTTTTAAGTTGAGCGTGCGCACTGCATGGGAAATAGCG,3' UTR,2,35558266,35730994,172729,1,Dab2ip-205,170883,Dab2ip-205;Dab2ip-206;Dab2ip-209;Dab2ip-211;Dab2ip-202;Dab2ip-207;Dab2ip-203;Dab2ip-201;Dab2ip-208;Dab2ip-204;Dab2ip-213,Dab2ip;Dab2ip;Dab2ip;Dab2ip;Dab2ip;Dab2ip;Dab2ip;Dab2ip;Dab2ip;Dab2ip;Dab2ip,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,TRUE,FALSE,threeUTR,9,12,69601,ENSMUSG00000026883,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
13767,cg22205400,-0.00000585,0.0000108,-0.540995885,0.588898947,loss,ns,0.0000132,0.0000184,0.718267387,0.473133411,pos,ns,-0.001382878,0.005378158,-0.257128648,0.797250045,neg,ns,0.098405448,0.000359817,0.000184954,1.94543734,0.05262609,pos,ns,0.896386149,Gabra3,Gabra3_Exon,X,72445265,72445314,72445313,72445314,50,-,AGAAAATACAAAGGCATAACAGACGGCTATGAACCAGTCCATGGCCGTCG,"Exon (Gabra3-201/Gabra3, exon 9 of 10)",20,72432681,72656186,223506,2,Gabra3-201,210872,Gabra3-201;Gabra3-202,Gabra3;Gabra3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,14396,ENSMUSG00000031343,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8042,cg18519316,-0.0000185,0.0000141,-1.312844151,0.190206508,loss,ns,0.0000172,0.000024,0.718190145,0.473180962,pos,ns,-0.002006408,0.0070232,-0.285682931,0.775311774,neg,ns,0.110523621,0.000402864,0.000241527,1.667984376,0.096328566,pos,ns,0.613991459,Pax2,Pax2_Intergenic_upstream,19,44699261,44699310,44699261,44699262,50,+,CGACTTCAATTTCATTTTATGAATATTTTCCTTGGGGAGCACGGCTATCA,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-56735,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
7061,cg02622074,0.0000328,0.00000242,13.56413844,3.19E-33,gain,yes,0.00000295,0.00000411,0.718189705,0.473181233,pos,ns,0.003133853,0.001202902,2.605243381,0.009623695,pos,ns,2.016658139,-0.000028,0.0000414,-0.677940401,0.498315171,neg,ns,0.060358291,Tfap2a,Tfap2a_Intron,13,40730615,40730664,40730615,40730616,50,-,CGCGCTGGGCAGCGTTCCTGGAGCCTCCTAATAGCAGATATTCATGACTA,"Intron (Gm26688-201/Gm26688-201, intron 1 of 2)",13,40715675,40733823,18149,2,Tfap2a-202,3159,Tfap2a-201;Tfap2a-202;Tfap2a-205;Tfap2a-203;Tfap2a-209;Tfap2a-208;Tfap2a-206;Tfap2a-204;Tfap2a-207,Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,57,21418,ENSMUSG00000021359,mapped to different genes,13,40730503,40730628,126,*,126,13,0.571428571,1.267801858,0.103174603,2.07E-10,CpGisland,TRUE,U3,Pr-B
14867,cg12600656,-0.0000033,0.00000173,-1.902338754,0.058053451,loss,ns,0.00000211,0.00000294,0.718107108,0.473232084,pos,ns,-0.000217896,0.00086219,-0.252723493,0.800649386,neg,ns,0.096557625,0.0000199,0.0000297,0.67143127,0.502445843,pos,ns,0.960299172,Phf12,Phf12_threeUTR,11,78024950,78024999,78024998,78024999,50,+,TCCGTCCCCAGATGGCAAGGTCAGCCCCGGCACGTTATCCATAGGAAGCG,3' UTR,11,77982754,78026214,43461,1,Phf12-202,42196,Phf12-202;Phf12-201;Phf12-207;Phf12-206;Phf12-208;Phf12-205;Phf12-203;Phf12-204,Phf12;Phf12;Phf12;Phf12;Phf12;Phf12;Phf12;Phf12,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,11,27,268448,ENSMUSG00000037791,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22512,cg18593128,-0.00000993,0.00000262,-3.797420601,0.000175904,loss,ns,0.00000319,0.00000444,0.718050448,0.473266967,pos,ns,-0.002563314,0.00130161,-1.969341891,0.049804077,neg,ns,1.302735104,0.000079,0.0000448,1.764884619,0.078567776,pos,ns,0.961674316,Rps4l-ps,Rps4l-ps_Intergenic_downstream,7,114897191,114897240,114897191,114897192,50,+,CGTATCTCAAAGCTTTGAATTTTATCTTTGTGGTCCAAAATGTTAAAGAG,Distal Intergenic,7,114926959,114927726,768,2,Rps4l-ps-201,30486,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,13,19,627967,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12444,cg00816192,0.0000543,0.00000806,6.736827242,7.88E-11,gain,yes,-0.00000983,0.0000137,-0.718030182,0.473279445,neg,ns,0.004578488,0.004009748,1.141839356,0.254402005,pos,ns,0.59447947,-0.000173107,0.000137895,-1.25535663,0.210294771,neg,ns,0.05961287,Onecut2,Onecut2_Exon,18,64340397,64340446,64340397,64340398,50,-,CGCCTATCGATGCCTCACCAAAGACCTAGAAGGCTGCGCCATGAACCCGG,Promoter (<=1kb),18,64340020,64400987,60968,1,Onecut2-201,377,Onecut2-201,Onecut2,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,19,225631,ENSMUSG00000045991,conserved gene and region,18,64339929,64340544,616,*,616,67,0.73538961,0.829721362,0.108766234,1.14E-53,CpGisland,TRUE,NA,NRS
2638,cg23038681,-0.00000479,0.00001,-0.478286641,0.632783324,loss,ns,-0.0000122,0.000017,-0.718006789,0.473293848,neg,ns,-0.008489071,0.004987441,-1.702089676,0.089741077,neg,ns,1.047008721,0.000288268,0.000171518,1.680688632,0.09383067,pos,ns,0.684805924,Camk2g,Camk2g_Exon,14,20771017,20771066,20771017,20771018,50,-,CGAGGTAGTGAAACCCTTCTTCAGAAATACTGTCATGGAGGCGCACTGCA,"Exon (Camk2g-203/Camk2g, exon 4 of 19)",14,20734875,20794051,59177,2,Camk2g-203,22985,Camk2g-203;Camk2g-201;Camk2g-202;Camk2g-217;Camk2g-214;Camk2g-216;Camk2g-215;Camk2g-207;Camk2g-208,Camk2g;Camk2g;Camk2g;Camk2g;Camk2g;Camk2g;Camk2g;Camk2g;Camk2g,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,15,12325,ENSMUSG00000021820,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9374,cg09200783,-0.00000204,0.00000158,-1.293788817,0.196701485,loss,ns,0.00000192,0.00000268,0.717963634,0.47332042,pos,ns,-0.000833215,0.000785309,-1.061001554,0.2895151,neg,ns,0.53832878,0.0000269,0.000027,0.995043672,0.320491072,pos,ns,0.961938789,Tmem260,Tmem260_Intron,14,48456488,48456537,48456488,48456489,50,-,CGGTGGGCCGCTTCACCTTTTCACAGCTGTTACCATTGAGTGACAACTAA,"Intron (Tmem260-210/Tmem260, intron 3 of 15)",14,48446124,48520368,74245,1,Tmem260-210,10364,Tmem260-210;Tmem260-202;Tmem260-209;Tmem260-203;Tmem260-201;Tmem260-204;Tmem260-205;Tmem260-211,Tmem260;Tmem260;Tmem260;Tmem260;Tmem260;Tmem260;Tmem260;Tmem260,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,11,218989,ENSMUSG00000036339,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8221,cg04069552,-0.000000541,0.00000283,-0.191029576,0.848627471,loss,ns,-0.00000345,0.00000481,-0.717913393,0.473351355,neg,ns,0.001093283,0.001408957,0.775952086,0.438368853,pos,ns,0.358160311,-0.0000265,0.0000485,-0.547567928,0.584382628,neg,ns,0.930359449,Gm5246,Gm5246_Intergenic_downstream,19,44880789,44880838,44880789,44880790,50,+,CGTCAGCTAAGCGATTAAATCAAGTATGTCGAACAAAATGTTATGAACTG,Distal Intergenic,19,44851009,44851979,971,1,Gm5246-201,29780,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,20,383450,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22588,cg05094213,-0.00000162,0.00000396,-0.410316418,0.681857284,loss,ns,0.00000483,0.00000672,0.717882426,0.473370423,pos,ns,0.002360261,0.00196914,1.19862523,0.231589188,pos,ns,0.63528172,-0.0000602,0.0000677,-0.888282684,0.375077413,neg,ns,0.921931213,Wwox,Wwox_Intron,8,115303399,115303448,115303399,115303400,50,+,CGAAAGGGCCGCTCTGACAGCTGCATAATTAAATACTGGAGTGTCAGCGA,"Intron (Wwox-201/Wwox, intron 8 of 8)",8,114439655,115352708,913054,1,Wwox-201,863744,Wwox-201;Wwox-209,Wwox;Wwox,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,32,32,80707,ENSMUSG00000004637,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8492,cg16595936,0.0000932,0.00000844,11.04619006,3.85E-24,gain,yes,-0.0000103,0.0000143,-0.717845957,0.47339288,neg,ns,0.004719081,0.00420026,1.123521315,0.262085458,pos,ns,0.581557075,0.000109029,0.000144447,0.754804326,0.450939432,pos,ns,0.244452437,Lbx1,Lbx1_Intergenic_downstream,19,45229271,45229320,45229319,45229320,50,+,CCAGCTCGTCCCTTTCAGGGGGGACTCATGCATCAAACTTCAATTTTCCG,Distal Intergenic,19,45232684,45235812,3129,2,Lbx1-201,6492,Lbx1-201,Lbx1,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,30,50,16814,ENSMUSG00000025216,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
76,cg19329807,0.00000924,0.0000109,0.847574594,0.397328829,gain,ns,-0.0000133,0.0000185,-0.717801956,0.473419975,neg,ns,-0.008588649,0.005428479,-1.582146359,0.114635837,neg,ns,0.940679594,0.000421854,0.000186685,2.25971255,0.024533022,pos,ns,0.362562081,Plag1,Plag1_Intron,4,3937214,3937263,3937214,3937215,50,-,CGGTTGAGTTATAAAAGGCTTTTGCCCTTCGAAAGTTTTAAAAAATAAAT,"Intron (Plag1-201/Plag1, intron 1 of 5)",4,3900996,3938382,37387,2,Plag1-201,1119,Chchd7-202;Chchd7-206;Chchd7-213;Chchd7-207;Chchd7-208;Chchd7-201;Chchd7-205;Chchd7-214;Chchd7-203;Chchd7-209;Chchd7-210;Chchd7-211;Chchd7-204;Plag1-201;Plag1-202;Plag1-204;Plag1-203,Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Plag1;Plag1;Plag1;Plag1,-1625;-1625;-1627;-1651;-1651;-1651;-1651;-1651;-1657;-1780;-2159;-2237;-3591;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,22,56711,ENSMUSG00000003282,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
1198,cg07250387,-0.00000376,0.00000277,-1.353789987,0.176789547,loss,ns,-0.00000338,0.00000471,-0.717782906,0.473431706,neg,ns,-0.002451324,0.001380605,-1.775542589,0.076789349,neg,ns,1.114699016,0.0000521,0.0000475,1.097803163,0.273142404,pos,ns,0.911682257,Phf14,Phf14_Intron,6,12039202,12039251,12039250,12039251,50,+,ACTGTGTAGATACCCTTCATGAGACCCAACTCTGCCACAGCTCATCCTCG,"Intron (Phf14-203/Phf14, intron 16 of 17)",6,11925916,12081205,155290,1,Phf14-203,113286,Phf14-203;Phf14-206;Phf14-209,Phf14;Phf14;Phf14,0;0;-2267,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,3,75725,ENSMUSG00000029629,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15357,cg13833018,0.00000885,0.00000576,1.536594865,0.125412552,gain,ns,0.00000702,0.00000979,0.717681548,0.473494125,pos,ns,-0.005244894,0.002867259,-1.829236006,0.068324719,neg,ns,1.165422145,0.0000819,0.0000986,0.830321949,0.406995771,pos,ns,0.825846087,Cdk5r1,Cdk5r1_Exon,11,80478238,80478287,80478286,80478287,50,-,CCGCTCAAGCCCTTCCTGGTGGAGAGCTGCAAGGAGGCCTTTTGGGACCG,"Exon (Cdk5r1-201/Cdk5r1, exon 1 of 1)",11,80477023,80481184,4162,1,Cdk5r1-201,1215,Cdk5r1-201;Cdk5r1-202;Myo1d-201;Psmd11-201;Psmd11-213,Cdk5r1;Cdk5r1;Myo1d;Psmd11;Psmd11,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,12569,ENSMUSG00000048895,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
956,cg04234156,-0.000000868,0.000000899,-0.965100365,0.335246808,loss,ns,0.0000011,0.00000153,0.717295864,0.473731683,pos,ns,0.000436759,0.000447461,0.97608232,0.329784733,pos,ns,0.481769453,-0.00000812,0.0000154,-0.527541333,0.598195078,neg,ns,0.022974588,Taf3,Taf3_Exon,2,10048326,10048375,10048326,10048327,50,+,CGAGTCCCAGCCCAGCGCCTGGCAGATCTGCGCCACCGAGACCCTCAACA,Promoter (<=1kb),2,9914552,10048596,134045,2,Taf3-201,221,Taf3-201,Taf3,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,7,209361,ENSMUSG00000025782,conserved gene and region,2,10047801,10048828,1028,*,1028,84,0.660505837,0.750052116,0.081712062,5.22E-56,CpGisland,TRUE,NA,NRS
19878,cg22059823,-0.0000302,0.0000155,-1.948469207,0.052260891,loss,ns,0.0000189,0.0000263,0.717228869,0.473772954,pos,ns,-0.01253423,0.007712503,-1.625183166,0.105139728,neg,ns,0.97823315,0.000364296,0.000265232,1.373497691,0.170590158,pos,ns,0.514622074,Gm45837,Gm45837_Exon,7,101421926,101421975,101421974,101421975,50,+,TGGGGCAGGCATGCGGCCACTCCATCCTCTGCAGGAGCCAGCAGTACCCG,"Exon (Pde2a-201/Pde2a, exon 1 of 31)",7,101410886,101512819,101934,1,Gm45837-201,11040,Gm45837-201;Pde2a-201;Pde2a-212;Pde2a-202;Pde2a-209,Gm45837;Pde2a;Pde2a;Pde2a;Pde2a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,6,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
27133,cg11040602,-0.0000323,0.00000823,-3.930191777,0.000104716,loss,ns,0.00001,0.000014,0.716769347,0.474056091,pos,ns,-0.003509691,0.004094747,-0.857120317,0.392040508,neg,ns,0.406669057,-0.000067,0.000140818,-0.475521477,0.634750223,neg,ns,0.848130387,Dhx35,Dhx35_Intergenic_downstream,2,159032394,159032443,159032442,159032443,50,+,TGACAGAGTTAGTTAATGTAACAAGCCCTTTAAGCATTTAGCCACATTCG,Distal Intergenic,2,158850629,158857368,6740,1,Dhx35-204,181765,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,14,14,71715,ENSMUSG00000027655,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24507,cg09137804,-0.0000106,0.00000312,-3.385218104,0.00080274,loss,ns,0.0000038,0.0000053,0.716737028,0.474076008,pos,ns,0.001114833,0.00155133,0.718630356,0.472909999,pos,ns,0.325221503,-0.000101482,0.0000534,-1.902190245,0.058072931,neg,ns,0.051809777,Gabpb1,Gabpb1_fiveUTR,2,126675252,126675301,126675252,126675253,50,+,CGGGGATGATCTGGGTTCCGGGGGAAGTGGAATTATTTTTTACCAGCGAA,Promoter (<=1kb),2,126627442,126675568,48127,2,Gabpb1-206,267,Gabpb1-206;Gabpb1-205;Gabpb1-204;Gabpb1-201;Gabpb1-203;Gabpb1-202;Gabpb1-208;Gabpb1-207,Gabpb1;Gabpb1;Gabpb1;Gabpb1;Gabpb1;Gabpb1;Gabpb1;Gabpb1,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,7,12,14391,ENSMUSG00000027361,conserved gene but different region,2,126674561,126675949,1389,*,1389,168,0.699064075,0.9905509,0.120950324,2.65E-142,CpGisland,TRUE,U1,Pr-A
21060,cg21142438,-0.00000176,0.00000206,-0.854980134,0.393222421,loss,ns,0.00000251,0.0000035,0.716705486,0.474095447,pos,ns,-0.0008765,0.00102419,-0.855797544,0.392770752,neg,ns,0.40586086,0.0000332,0.0000352,0.942151128,0.346848895,pos,ns,0.963954339,Vrk1,Vrk1_Intergenic_downstream,12,106203645,106203694,106203693,106203694,50,+,GATAAAACGGATAAGGGACTTTAATCAAAAAATCCGCTGGCCTGGAAACG,Distal Intergenic,12,106030717,106075409,44693,1,Vrk1-204,172928,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,29,37,22367,ENSMUSG00000021115,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3343,cg02175825,-0.0000104,0.00000835,-1.243494643,0.214625169,loss,ns,-0.0000102,0.0000142,-0.716616145,0.474150508,neg,ns,-0.005840599,0.004157933,-1.404688259,0.161115186,neg,ns,0.792863523,-0.0000767,0.000142991,-0.5365167,0.591986298,neg,ns,0.729114159,Gm11890,Gm11890_Intergenic_upstream,4,23753274,23753323,23753322,23753323,50,+,TAGCGCCAGCCTCCCCTGAGTTTACAGCAAATTACTGAAAGCAGGGCTCG,Distal Intergenic,4,23659928,23660344,417,2,Gm11890-201,-92930,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,15,32,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18506,cg23805666,-0.00000918,0.00000655,-1.4025132,0.161762684,loss,ns,0.00000797,0.0000111,0.716584608,0.474169945,pos,ns,0.001441232,0.003258263,0.442331277,0.658557947,pos,ns,0.181406005,-0.000199669,0.000112051,-1.781937621,0.075738172,neg,ns,0.883705322,Tafa1,Tafa1_Intron,6,96180569,96180618,96180617,96180618,50,-,CTTTAATCACCCTAATTCCTGTACTTGGGGTCATATTACTTAAGTAGGCG,"Intron (Tafa1-202/Tafa1, intron 2 of 4)",6,96113154,96657198,544045,1,Tafa1-202,67415,Tafa1-202;Tafa1-201,Tafa1;Tafa1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,320265,ENSMUSG00000059187,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20842,cg06624201,-0.00000221,0.00000447,-0.493492121,0.622014334,loss,ns,-0.00000544,0.00000759,-0.716542528,0.474195881,neg,ns,-0.005665913,0.002225048,-2.546422985,0.011366741,neg,ns,1.944364039,0.000181889,0.0000765,2.377039154,0.01805888,pos,ns,0.877813408,Arfip2,Arfip2_threeUTR,7,105638219,105638268,105638267,105638268,50,-,TTGATGCCCCATTTCTTGACGATGTCAAACTTTTCTCCAGCAATGCCCCG,3' UTR,7,105634203,105640416,6214,2,Arfip2-206,2148,Arfip2-206;Arfip2-210;Arfip2-202;Arfip2-201;Arfip2-205;Arfip2-209;Arfip2-213;Arfip2-212;Arfip2-214;Arfip2-208;Arfip2-203;Arfip2-207;Arfip2-211;Arfip2-204;Gm45799-201;Gm45799-203;Gm45799-204;Gm45799-205;Gm45799-202;Gm45799-208;Gm45799-207;Gm45799-206;Timm10b-203;Timm10b-201;Timm10b-211;Timm10b-208;Timm10b-207;Timm10b-210;Timm10b-202;Timm10b-206;Timm10b-204;Timm10b-205;Timm10b-209;Trim3-203;Trim3-201;Trim3-202;Trim3-205;Trim3-207;Trim3-204,Arfip2;Arfip2;Arfip2;Arfip2;Arfip2;Arfip2;Arfip2;Arfip2;Arfip2;Arfip2;Arfip2;Arfip2;Arfip2;Arfip2;Gm45799;Gm45799;Gm45799;Gm45799;Gm45799;Gm45799;Gm45799;Gm45799;Timm10b;Timm10b;Timm10b;Timm10b;Timm10b;Timm10b;Timm10b;Timm10b;Timm10b;Timm10b;Timm10b;Trim3;Trim3;Trim3;Trim3;Trim3;Trim3,0;0;0;0;0;0;0;0;0;0;0;0;0;2072;-2284;-2294;0;-2296;-2302;-2309;-2752;-2915;-1788;-2180;-2283;-2296;-2299;-2303;-2303;-2321;-2322;-2403;-2849;0;0;0;0;-4694;-4648,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,4,76932,ENSMUSG00000030881,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4945,cg16232229,-0.00000465,0.00000226,-2.052033424,0.041006024,loss,ns,-0.00000276,0.00000385,-0.71645578,0.47424935,neg,ns,0.000371575,0.001127181,0.329650218,0.741886904,pos,ns,0.129662295,-0.0000335,0.0000388,-0.863325716,0.388625846,neg,ns,0.957111818,Wdr4,Wdr4_Exon,17,31509766,31509815,31509814,31509815,50,-,TACCTGACACTCAGACATTGCCATGGTTTTGTACGGAAAAGAATCAGACG,"Exon (Wdr4-207/Wdr4, exon 3 of 11)",17,31494322,31512751,18430,2,Wdr4-207,2936,Wdr4-207;Wdr4-206;Wdr4-210;Wdr4-211;Wdr4-213;Wdr4-204;Wdr4-212;Wdr4-208;Wdr4-203;Wdr4-201;Wdr4-214;Wdr4-209,Wdr4;Wdr4;Wdr4;Wdr4;Wdr4;Wdr4;Wdr4;Wdr4;Wdr4;Wdr4;Wdr4;Wdr4,0;0;0;0;0;0;0;0;0;0;0;10159,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,57773,ENSMUSG00000024037,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1406,cg10865095,-0.000000677,0.0000013,-0.52091057,0.602800951,loss,ns,-0.00000158,0.00000221,-0.716332704,0.474325217,neg,ns,0.000681451,0.000647192,1.052934498,0.293191029,pos,ns,0.532849322,-0.000012,0.0000223,-0.537438773,0.591350135,neg,ns,0.961090797,Ttc39c,Ttc39c_Exon,18,12695475,12695524,12695523,12695524,50,+,CCCCCAAACCTGCTCAAAATCATCAACCTGCTGGGTTTTCCTGGAGACCG,"Exon (Ttc39c-208/Ttc39c, exon 5 of 8)",18,12599896,12725017,125122,1,Ttc39c-208,95579,Ttc39c-208;Ttc39c-205;Ttc39c-204;Ttc39c-207;Ttc39c-201;Ttc39c-206,Ttc39c;Ttc39c;Ttc39c;Ttc39c;Ttc39c;Ttc39c,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,72747,ENSMUSG00000024424,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19674,cg16854524,-0.00000163,0.00000165,-0.98980578,0.323040994,loss,ns,-0.00000201,0.0000028,-0.71629296,0.474349718,neg,ns,0.00071233,0.000821384,0.867231331,0.386486053,pos,ns,0.412866174,-0.0000398,0.0000282,-1.409582219,0.159665488,neg,ns,0.078470039,Lin54,Lin54_fiveUTR,5,100498516,100498565,100498564,100498565,50,-,TATGTCAGGGGCCGGGATTGTATTTCGAAAGATCCGCCATTTTCACCTCG,Promoter (<=1kb),5,100443552,100498523,54972,2,Lin54-205,0,Lin54-208;Lin54-204;Lin54-210;Lin54-201;Lin54-202;Lin54-206;Lin54-205;Lin54-209;Lin54-207,Lin54;Lin54;Lin54;Lin54;Lin54;Lin54;Lin54;Lin54;Lin54,0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,5,231506,ENSMUSG00000035310,conserved gene and region,5,100498280,100498901,622,*,622,50,0.652733119,0.772709203,0.080385852,2.87E-33,CpGisland,TRUE,U1,Pr-A
22715,cg16970182,-0.000019,0.0000041,-4.639440483,0.00000516,loss,ns,-0.00000499,0.00000696,-0.716265856,0.474366427,neg,ns,-0.001175065,0.002040261,-0.575938465,0.565074644,neg,ns,0.24789418,-0.000140092,0.0000702,-1.996631112,0.046739441,neg,ns,0.914814368,Sox6,Sox6_Intron,7,115808035,115808084,115808083,115808084,50,-,TTGGAATGCTTTGACTCATGAATTGTTTCTCCTGATAATGTTACATCACG,"Intron (Sox6-210/Sox6, intron 2 of 15)",7,115470872,116031047,560176,2,Sox6-210,222963,Sox6-210;Sox6-201;Sox6-202;Sox6-204;Sox6-205;Sox6-203;Sox6-212;Sox6-206;Sox6-209;Sox6-214;Sox6-211;Sox6-208,Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,37,57,20679,ENSMUSG00000051910,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11230,cg22310800,-0.00000265,0.00000579,-0.457084975,0.647930108,loss,ns,0.00000704,0.00000984,0.716102442,0.474467174,pos,ns,0.003732789,0.00288218,1.295126981,0.196240112,pos,ns,0.707212217,-0.000109855,0.0000991,-1.108323081,0.268581451,neg,ns,0.883179781,Ablim1,Ablim1_fiveUTR,19,57083521,57083570,57083569,57083570,50,+,AGATACATTTCCTCTCCTTCTGTGAACATCTGGTTGCATCTGCTGCATCG,5' UTR,19,57032733,57216032,183300,2,Ablim1-201,132462,Ablim1-201;Ablim1-207;Ablim1-203;Ablim1-202;Ablim1-213;Ablim1-206;Ablim1-205;Ablim1-210;Ablim1-212;Ablim1-211;Ablim1-209;Ablim1-208;Ablim1-221;Ablim1-217;Ablim1-218,Ablim1;Ablim1;Ablim1;Ablim1;Ablim1;Ablim1;Ablim1;Ablim1;Ablim1;Ablim1;Ablim1;Ablim1;Ablim1;Ablim1;Ablim1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,4,226251,ENSMUSG00000025085,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9099,cg14504327,0.00000888,0.0000106,0.838019988,0.402665131,gain,ns,0.0000129,0.000018,0.715890732,0.474597714,pos,ns,-0.001928767,0.005271084,-0.365914706,0.714678297,neg,ns,0.145889406,-0.0000106,0.000181272,-0.05873042,0.95320467,neg,ns,0.84213364,Gm4791,Gm4791_Intergenic_upstream,9,46864797,46864846,46864845,46864846,50,+,CCGCCTCCTCATAATTTGCTTAACCGAAATAGGCTCTTTCATCATCTGCG,Distal Intergenic,9,46998741,47003860,5120,1,Gm4791-201,-133895,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,9,18,215467,ENSMUSG00000094893,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26210,cg06712694,-0.0000489,0.00000849,-5.762638825,0.00000002,loss,yes,-0.0000103,0.0000144,-0.715804108,0.474651132,neg,ns,-0.013421492,0.004225929,-3.175986528,0.001643558,neg,ns,2.784214925,0.000205289,0.000145329,1.412580771,0.158782162,pos,ns,0.862210626,Sox5,Sox5_Intron,6,144472618,144472667,144472666,144472667,50,+,CATATGGCCATTTACAGTTGACAGCTGTCACCCAGGCAAGTTCACATACG,"Intron (Sox5-209/Sox5, intron 3 of 13)",6,143843739,144781977,938239,2,Sox5-209,309310,Sox5-209;Sox5-212,Sox5;Sox5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,71,20678,ENSMUSG00000041540,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1135,cg07443440,-0.00000146,0.00000123,-1.1861421,0.236474489,loss,ns,0.0000015,0.00000209,0.71558906,0.474783758,pos,ns,0.001304985,0.000612315,2.131229577,0.03385668,pos,ns,1.470355631,-0.000058,0.0000211,-2.755831752,0.006200798,neg,ns,0.968019934,Ikzf1,Ikzf1_threeUTR,11,11761316,11761365,11761316,11761317,50,+,CGCCAAACGTAAGAGCTCTATGCCTCAGAAATTTCTTGGTAAGAGTTAAA,3' UTR,11,11685925,11772112,86188,1,Ikzf1-203,75391,Ikzf1-203;Ikzf1-204;Ikzf1-202;Ikzf1-201,Ikzf1;Ikzf1;Ikzf1;Ikzf1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,15,22778,ENSMUSG00000018654,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4986,cg09019938.1,0.0000349,0.00000757,4.613096284,0.00000581,gain,ns,-0.00000921,0.0000129,-0.715510704,0.474832088,neg,ns,0.010981539,0.003769684,2.913118945,0.003838406,pos,ns,2.415849079,-0.000241759,0.000129639,-1.864860717,0.063145679,neg,ns,0.081253483,Prkg1,Prkg1_Exon,19,31664133,31664182,31664133,31664134,50,+,CGGTACTTGTCCAGCTCGTTCTGCAGCTTCTGGATCAGTTCGTCCTTCTG,"Exon (Prkg1-202/Prkg1, exon 1 of 18)",19,30564489,31765033,1200545,2,Prkg1-201,100851,Prkg1-201;Prkg1-202,Prkg1;Prkg1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,13,19091,ENSMUSG00000052920,conserved gene and region,19,31664002,31664401,400,*,400,33,0.635,0.825774163,0.0825,1.52E-22,CpGisland,TRUE,U3,Pr-B
14257,cg19249665,-0.00000385,0.00000328,-1.17369209,0.241419317,loss,ns,-0.00000399,0.00000557,-0.715436941,0.474877588,neg,ns,0.000145752,0.001632182,0.089298675,0.928902211,pos,ns,0.032030003,-0.0000704,0.0000561,-1.254384553,0.210647235,neg,ns,0.93754498,Chic2,Chic2_threeUTR,5,74999282,74999331,74999330,74999331,50,-,TCGGCTTCATTACACCACCGCTCCATTTGTAATGTAAATTGGGAAACTCG,3' UTR,5,74997988,75044774,46787,2,Chic2-201,45443,Chic2-201,Chic2,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,10,74277,ENSMUSG00000029229,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4275,cg21703944,-0.0000405,0.00000617,-6.562673055,2.22E-10,loss,yes,-0.0000075,0.0000105,-0.715364686,0.474922159,neg,ns,0.005172395,0.003070368,1.684617044,0.093068924,pos,ns,1.031195308,-0.000542876,0.00010559,-5.141374428,0.000000484,neg,yes,0.729594589,Scube3,Scube3_Exon,17,28165973,28166022,28165973,28165974,50,+,CGACTCTCCCTCAGTCAGCTGCCCGCAGGGAACGTATTACCACGGCCAGA,"Exon (Scube3-201/Scube3, exon 16 of 22)",17,28142141,28174854,32714,1,Scube3-201,23832,Scube3-201;Scube3-207;Scube3-202;Scube3-203;Scube3-206;Scube3-205;Scube3-204,Scube3;Scube3;Scube3;Scube3;Scube3;Scube3;Scube3,0;0;0;0;7099;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,7,268935,ENSMUSG00000038677,conserved gene but different region,17,28165967,28166085,119,*,119,9,0.672268908,0.669793621,0.075630252,0.00000392,CpGisland,TRUE,U11,Tr-P
5367,cg27009181,0.0000124,0.00000338,3.678700358,0.000276312,gain,ns,-0.00000411,0.00000575,-0.715329696,0.474943744,neg,ns,0.001431304,0.001683962,0.84996227,0.396002022,pos,ns,0.402302597,-0.0000679,0.0000579,-1.172270737,0.24198846,neg,ns,0.064463045,Lmx1b,Lmx1b_Intron,2,33630979,33631028,33630979,33630980,50,+,CGGGAGAAAAACGGGGTTTAGGGTTTTTGTAATCCCCCTAAACTGTCTTT,"Intron (Lmx1b-201/Lmx1b, intron 2 of 7)",2,33560965,33640608,79644,2,Lmx1b-201,9580,Lmx1b-201;Lmx1b-203;Lmx1b-204;Lmx1b-202,Lmx1b;Lmx1b;Lmx1b;Lmx1b,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,26,16917,ENSMUSG00000038765,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
13620,cg26333649,0.000154262,0.0000118,13.08724581,1.85E-31,gain,yes,-0.0000143,0.00002,-0.715172869,0.475040495,neg,ns,0.014315463,0.005866616,2.440156727,0.015240837,pos,ns,1.816991188,0.000207697,0.000201752,1.029464309,0.30406408,pos,ns,0.417493352,Dlx1,Dlx1_Intron,2,71536302,71536351,71536302,71536303,50,+,CGAGCTGCCATCTCTGCAATTCTCTGGTACCGGAGCCGGCAAATTGCTTG,"Intron (Dlx1as-204/Dlx1as-204, intron 1 of 1)",2,71530780,71532689,1910,1,Dlx1-206,5522,Dlx1-201;Dlx1-204;Dlx1-203;Dlx1-206,Dlx1;Dlx1;Dlx1;Dlx1,0;0;0;5522,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,36,13390,ENSMUSG00000041911,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
4809,cg09280663,0.000061,0.00000926,6.584723216,1.95E-10,gain,yes,-0.0000112,0.0000157,-0.715021347,0.475133983,neg,ns,0.006863668,0.004607945,1.489529024,0.137364778,pos,ns,0.862124612,-0.000278037,0.000158467,-1.754540906,0.080325831,neg,ns,0.056010018,Ctnnd2,Ctnnd2_Exon,15,30647035,30647084,30647035,30647036,50,+,CGGCTCCTCGCCCAAGCAGTCGCCCAGCCGCCTGGCCAAGTCCTACAGCA,"Exon (Ctnnd2-201/Ctnnd2, exon 7 of 23)",15,30172593,31029341,856749,1,Ctnnd2-201,474442,Ctnnd2-201;Ctnnd2-202;Ctnnd2-203;Ctnnd2-209;Ctnnd2-211,Ctnnd2;Ctnnd2;Ctnnd2;Ctnnd2;Ctnnd2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,10,18163,ENSMUSG00000022240,conserved gene and region,15,30646538,30647369,832,*,832,94,0.719951923,0.895361084,0.112980769,9.03E-77,CpGisland,TRUE,U3,Pr-B
17903,cg27217092,0.00000342,0.00000421,0.813511585,0.416549193,gain,ns,0.00000511,0.00000715,0.714907582,0.475204182,pos,ns,-0.005185511,0.002094177,-2.476157684,0.013814142,neg,ns,1.85967607,0.000122985,0.000072,1.707689846,0.088695069,pos,ns,0.854542496,Dlg2,Dlg2_Exon,7,92418063,92418112,92418111,92418112,50,+,GCTCTCTCTGGGGACTTCCATGCAGGACATCCCCGGATTAGGTGACGACG,"Exon (Dlg2-217/Dlg2, exon 22 of 28)",7,90477231,92449247,1972017,1,Dlg2-217,1940832,Dlg2-217;Dlg2-204;Dlg2-201;Dlg2-220;Dlg2-218;Dlg2-219;Dlg2-203;Dlg2-202;Dlg2-212;Dlg2-208;Dlg2-207;Dlg2-214,Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,21,23859,ENSMUSG00000052572,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16032,cg03572878,0.000000346,0.00000124,0.279039147,0.780400843,gain,ns,-0.00000151,0.00000211,-0.714867611,0.475228848,neg,ns,-0.0000269,0.000616879,-0.043681564,0.965186358,neg,ns,0.015388825,-0.00000558,0.0000212,-0.263100155,0.792648164,neg,ns,0.970565704,Acaca,Acaca_Intron,11,84271997,84272046,84271997,84271998,50,-,CGCTTGCCTTAAGAATCTCATTATTGGAACACGGAGCCATATTTCCTCTG,"Intron (Acaca-202/Acaca, intron 25 of 55)",11,84173122,84401651,228530,1,Acaca-202,98875,Acaca-202;Acaca-201,Acaca;Acaca,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,28,28,107476,ENSMUSG00000020532,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7046,cg10238972,0.0000973,0.0000079,12.31108165,1.26E-28,gain,yes,-0.0000096,0.0000134,-0.714862516,0.475231992,neg,ns,0.014921576,0.00393413,3.792853089,0.000179025,pos,ns,3.747086475,-0.000322401,0.000135294,-2.382957683,0.017776412,neg,ns,0.143213104,Tfap2a,Tfap2a_Exon,13,40717171,40717220,40717219,40717220,50,-,TGTTGGGGTTGTTGCTGAGGTACATTTTGTCCATGGCCTTGAGGGCCTCG,"Exon (Tfap2a-201/Tfap2a, exon 7 of 7)",13,40715302,40730443,15142,2,Tfap2a-201,13223,Tfap2a-201;Tfap2a-202;Tfap2a-205;Tfap2a-203;Tfap2a-209;Tfap2a-208;Tfap2a-206;Tfap2a-204,Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,13,57,21418,ENSMUSG00000021359,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
4898,cg24054192,-0.00000162,0.00000408,-0.395551329,0.692708116,loss,ns,0.00000496,0.00000694,0.714854352,0.47523703,pos,ns,-0.002430168,0.002033097,-1.19530308,0.23288223,neg,ns,0.632863648,0.0000729,0.0000699,1.042285222,0.298091608,pos,ns,0.965413766,Zfp513,Zfp513_Exon,5,31200450,31200499,31200498,31200499,50,+,CGTGTCAGGTTGACGAGCTGGGCTGAGGCGTAGGGGCAGCGGCCACAGCG,"Exon (Zfp513-202/Zfp513, exon 3 of 4)",5,31198981,31202303,3323,2,Zfp513-202,1804,Ppm1g-205;Ppm1g-201;Ppm1g-206;Ppm1g-203;Ppm1g-204;Snx17-201;Snx17-202;Snx17-204;Snx17-210;Snx17-208;Snx17-207;Snx17-211;Snx17-209;Snx17-206;Snx17-203;Zfp513-202;Zfp513-201;Zfp513-205;Zfp513-207;Zfp513-203;Zfp513-204;Zfp513-208;Zfp513-206,Ppm1g;Ppm1g;Ppm1g;Ppm1g;Ppm1g;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Zfp513;Zfp513;Zfp513;Zfp513;Zfp513;Zfp513;Zfp513;Zfp513,0;0;4584;0;0;0;0;0;0;0;0;5607;0;0;0;0;0;0;-164;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,15,15,101023,ENSMUSG00000043059,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24584,cg24716547,0.00000677,0.00000218,3.100267747,0.002110976,gain,ns,0.00000265,0.00000371,0.71460568,0.4753905,pos,ns,0.002851726,0.001086385,2.62496909,0.009095195,pos,ns,2.041187964,-0.0000724,0.0000374,-1.936797864,0.053678519,neg,ns,0.945611286,Sfpq,Sfpq_Intron,4,127029685,127029734,127029733,127029734,50,+,CCTTTCTATGTTCCCGGTACCTGTGGATCGACTCATTGGTGATTGTATCG,"Intron (Sfpq-201/Sfpq, intron 9 of 9)",4,127021324,127031236,9913,1,Sfpq-201,8361,Sfpq-201;Sfpq-203;Sfpq-206;Sfpq-205;Sfpq-204;Sfpq-202,Sfpq;Sfpq;Sfpq;Sfpq;Sfpq;Sfpq,0;6302;0;3761;3729;3240,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,12,71514,ENSMUSG00000028820,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18096,cg13884249,0.0000483,0.00000584,8.275463088,3.85E-15,gain,yes,-0.00000709,0.00000992,-0.714567645,0.475413976,neg,ns,0.005744272,0.00290662,1.976272276,0.049010166,pos,ns,1.309713822,-0.000104937,0.0001,-1.0498062,0.294624939,neg,ns,0.153906231,Gnao1,Gnao1_Exon,8,93811374,93811423,93811422,93811423,50,-,CGAGCGGAGCAAGGCGATTGAGAAAAACCTCAAAGAGGATGGCATCAGCG,"Exon (Gnao1-202/Gnao1, exon 1 of 2)",8,93809966,93950403,140438,1,Gnao1-206,1408,Gnao1-206;Gnao1-202;Gnao1-201;Gnao1-203;Gnao1-207,Gnao1;Gnao1;Gnao1;Gnao1;Gnao1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,13,14681,ENSMUSG00000031748,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
1116,cg21015914,-0.000000937,0.0000037,-0.253047412,0.800399296,loss,ns,0.0000045,0.00000629,0.714518,0.475444619,pos,ns,0.003469982,0.001843637,1.882139014,0.060753715,pos,ns,1.216427162,-0.000178528,0.0000634,-2.815778852,0.005177638,neg,ns,0.928460907,Ikzf1,Ikzf1_Promoter,11,11676047,11676096,11676047,11676048,50,+,CGACTTGACAGTCTGCTTTCACTAATCCATATGCATATAAGGTGTATATT,Promoter (8-9kb),11,11685003,11707800,22798,1,Ikzf1-206,-8907,NA,NA,NA,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,4,15,22778,ENSMUSG00000018654,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7369,cg09841954,0.0000552,0.00000853,6.474096241,3.73E-10,gain,yes,-0.0000104,0.0000145,-0.714484808,0.475465107,neg,ns,0.015851984,0.004246325,3.733106788,0.00022498,pos,ns,3.647855751,-0.000421192,0.000146031,-2.884268727,0.00419796,neg,ns,0.091237445,Gabrb2,Gabrb2_fiveUTR,11,42421252,42421301,42421252,42421253,50,+,CGTGCGCATGCGCCTCACATTAGAATTACTGCACTGGGCAGACTAAGTTG,Promoter (<=1kb),11,42421279,42487545,66267,1,Gabrb2-202,0,Gabrb2-201;Gabrb2-203;Gabrb2-202;Gabrb2-204;Gabrb2-205,Gabrb2;Gabrb2;Gabrb2;Gabrb2;Gabrb2,0;0;0;-9;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,5,14401,ENSMUSG00000007653,conserved gene and region,11,42421208,42421263,56,*,56,8,0.696428571,1.185185185,0.142857143,0.000000123,CpGisland,TRUE,U9,En-Pp
27288,cg26482427,-0.000128737,0.0000143,-9.000456662,2.32E-17,loss,yes,0.0000174,0.0000243,0.714425014,0.475502016,pos,ns,-0.020201827,0.007118959,-2.837750272,0.004842804,neg,ns,2.314903073,0.00042129,0.00024482,1.720811371,0.086282853,pos,ns,0.743113806,Tox2,Tox2_Intron,2,163285104,163285153,163285152,163285153,50,+,CTAATAAAAGCTGCTATTAATATTTCTTGTTGCCTAGCAACCCCAGAGCG,"Intron (Tox2-202/Tox2, intron 3 of 8)",2,163203125,163324170,121046,1,Tox2-202,81979,Tox2-202;Tox2-201;Tox2-205,Tox2;Tox2;Tox2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,5,269389,ENSMUSG00000074607,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26393,cg09344934,0.000101245,0.0000112,9.027503763,1.91E-17,gain,yes,-0.0000136,0.0000191,-0.714326467,0.475562851,neg,ns,0.015179074,0.005581885,2.719345418,0.006909816,pos,ns,2.160533548,-0.000099,0.000191961,-0.515965549,0.606246277,neg,ns,0.372565728,Nkx2-2,Nkx2-2_Intron,2,147188464,147188513,147188512,147188513,50,-,GGCATTCAACCCTTTTCAATGGACTATCTCTTCATTCATTTCTGAATCCG,"Intron (Nkx2-2os-201/Nkx2-2os-201, intron 1 of 5)",2,147186305,147194243,7939,2,Nkx2-2-202,5730,Nkx2-2-203;Nkx2-2-201;Nkx2-2-202;Nkx2-2-204,Nkx2-2;Nkx2-2;Nkx2-2;Nkx2-2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,30,18088,ENSMUSG00000027434,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
21954,cg26078832,0.000123413,0.0000122,10.09001164,6.90E-21,gain,yes,-0.0000148,0.0000208,-0.71429677,0.475581184,neg,ns,0.036379294,0.006087589,5.975976846,6.28E-09,pos,ns,8.202222783,-0.000523212,0.000209352,-2.499200537,0.012964387,neg,ns,0.761517126,Faf1,Faf1_Intron,4,109806620,109806669,109806668,109806669,50,+,TAAGCCAAGACAGAGCCCTTTTGTGATTGCTTTTCAGGTGACATTCAGCG,"Intron (Faf1-201/Faf1, intron 8 of 18)",4,109676588,109963960,287373,1,Faf1-201,130032,Faf1-201,Faf1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,24,14084,ENSMUSG00000010517,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22418,cg26336538,-0.0000017,0.00000225,-0.756648486,0.449835137,loss,ns,0.00000273,0.00000382,0.714284221,0.475588931,pos,ns,0.00262422,0.001118161,2.346907566,0.019559039,pos,ns,1.708652491,-0.000085,0.0000385,-2.209692936,0.027857076,neg,ns,0.050251655,Fst,Fst_Intron,13,114456932,114456981,114456932,114456933,50,-,CGTGCAGCTTGCATTGACTTTTACTAGACTGTTTACTTTTATTCGTCCCA,"Intron (Fst-202/Fst, intron 1 of 5)",13,114452290,114458951,6662,2,Fst-202,1970,Fst-202;Fst-201;Fst-203;Fst-206;Fst-205;Fst-204,Fst;Fst;Fst;Fst;Fst;Fst,0;0;-2381;-696;0;-1722,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,7,14313,ENSMUSG00000021765,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
22452,cg03096851,-0.00000253,0.0000711,-0.035605186,0.971620088,loss,ns,-0.0000863,0.000120793,-0.71416361,0.475663394,neg,ns,0.010490123,0.035388347,0.296428731,0.76710118,pos,ns,0.115147349,-0.000454531,0.001217002,-0.373483843,0.709043647,neg,ns,0.692202331,Wwox,Wwox_Intron,8,114597612,114597661,114597660,114597661,50,-,ATTTGCATTAATCTCACCTCTGAAGGGTACAGTAACCCATTAATATCACG,"Intron (Wwox-201/Wwox, intron 5 of 8)",8,114439655,115352708,913054,1,Wwox-201,157957,Wwox-201;Wwox-207;Wwox-203,Wwox;Wwox;Wwox,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,32,32,80707,ENSMUSG00000004637,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12585,cg05482254,0.000107367,0.0000158,6.777330927,6.18E-11,gain,yes,-0.0000192,0.0000269,-0.714140743,0.475677513,neg,ns,0.038210504,0.007884764,4.846119169,0.00000199,pos,ns,5.700441408,-0.000882915,0.000271156,-3.256108875,0.001254557,neg,ns,0.219298523,Tiparp,Tiparp_Intron,3,65533714,65533763,65533714,65533715,50,+,CGATGTTGTGTTTCCTGGCAACAAGATGCAGATAACGGCATGTTGAGCCT,"Intron (Tiparp-201/Tiparp, intron 2 of 5)",3,65528410,65555518,27109,1,Tiparp-201,5304,4931440P22Rik-203;4931440P22Rik-204;4931440P22Rik-201;Tiparp-201;Tiparp-202,4931440P22Rik;4931440P22Rik;4931440P22Rik;Tiparp;Tiparp,-4343;-4501;-4335;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,99929,ENSMUSG00000034640,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11171,cg00249943,0.0000212,0.00000572,3.708310318,0.000247147,gain,ns,-0.00000694,0.00000971,-0.714135478,0.475680763,neg,ns,-0.000169122,0.002845355,-0.059437923,0.952641606,neg,ns,0.021070455,0.0000497,0.0000979,0.507720096,0.612010691,pos,ns,0.811553658,Trpc7,Trpc7_Exon,13,56831383,56831432,56831383,56831384,50,+,CGTAAGCCTGAGAGATTTTCATACCACATGGTAAGCAATTGCTGCTGACA,"Exon (Trpc7-201/Trpc7, exon 4 of 12)",13,56773113,56895737,122625,2,Trpc7-201,64305,Trpc7-201;Trpc7-202;Trpc7-203;Trpc7-204;Trpc7-205;Trpc7-206;Trpc7-208;Trpc7-207,Trpc7;Trpc7;Trpc7;Trpc7;Trpc7;Trpc7;Trpc7;Trpc7,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,5,26946,ENSMUSG00000021541,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6902,cg05638201,-0.0000112,0.000009,-1.242319421,0.215057693,loss,ns,-0.0000109,0.0000153,-0.714119352,0.47569072,neg,ns,0.005050328,0.004477812,1.127856357,0.260252745,pos,ns,0.584604682,-0.000185116,0.000153992,-1.202119973,0.230234507,neg,ns,0.647770312,Gm5195,Gm5195_Intergenic_upstream,13,39411577,39411626,39411625,39411626,50,-,CCACCACAGCCATTTAGTAAATTATCAGTTTTCTTATTGGCCCTAAATCG,Distal Intergenic,13,39757308,39757967,660,1,Gm5195-201,-345731,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,4,382747,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12563,cg10320130,-0.00000593,0.00000288,-2.056173565,0.040602721,loss,ns,-0.0000035,0.0000049,-0.71410465,0.475699797,neg,ns,-0.000594692,0.001434512,-0.414560156,0.678750642,neg,ns,0.168289746,0.0000566,0.0000493,1.147979141,0.25186228,pos,ns,0.930353928,Fzd3,Fzd3_Exon,14,65235226,65235275,65235274,65235275,50,-,GCCAACAAAACACACGCCACTAATATTGTCACCTTCAATTTTATTCATCG,"Exon (Fzd3-202/Fzd3, exon 4 of 7)",14,65192449,65262463,70015,2,Fzd3-202,27188,Fzd3-202,Fzd3,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,14365,ENSMUSG00000007989,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14491,cg18230041,-0.0000144,0.00000673,-2.14643565,0.032614067,loss,ns,-0.00000816,0.0000114,-0.714087547,0.475710357,neg,ns,0.001161587,0.003348928,0.346853277,0.728936883,pos,ns,0.137310075,-0.0000573,0.000115169,-0.497614379,0.619108649,neg,ns,0.934577027,Gtf2f2,Gtf2f2_Exon,14,75962903,75962952,75962903,75962904,50,+,CGAGAAAATCAACTTCTTGCACAAGAAGCAGAATTCTTTCAGCTCAAGGG,"Exon (Kctd4-201/Kctd4, exon 2 of 2)",14,75896937,76010865,113929,2,Gtf2f2-201,47913,Gtf2f2-201;Kctd4-201,Gtf2f2;Kctd4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,68705,ENSMUSG00000067995,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14956,cg15315710,-0.0000163,0.00000516,-3.149214862,0.00179662,loss,ns,0.00000626,0.00000877,0.714064755,0.47572443,pos,ns,-0.00620566,0.002568305,-2.416246869,0.016258989,neg,ns,1.788906459,0.00017641,0.0000883,1.99730711,0.046665595,pos,ns,0.074601049,Nr2f1,Nr2f1_Exon,13,78200407,78200456,78200455,78200456,50,+,GCGAATGTCTGTATATAGTGAACTTTGACACTACTATTGAAACTGACACG,Promoter (<=1kb),13,78188973,78199757,10785,2,Nr2f1-201,-650,Nr2f1-201;Nr2f1-205;Nr2f1-203;Nr2f1-202;Nr2f1-206,Nr2f1;Nr2f1;Nr2f1;Nr2f1;Nr2f1,0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,25,55,13865,ENSMUSG00000069171,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
15919,cg06800074,0.00000198,0.00000464,0.42733044,0.66943533,gain,ns,0.00000563,0.00000789,0.713868691,0.475845499,pos,ns,0.006479692,0.002311598,2.803122825,0.00537992,pos,ns,2.269224166,-0.000245041,0.0000795,-3.082447877,0.002237486,neg,ns,0.533453885,Gm5452,Gm5452_Intron,13,83872192,83872241,83872240,83872241,50,+,GATATTTGTCACACTCATTTAAATTGATGTATGCTGCTGTCCTATAAACG,"Intron (C130071C03Rik-204/C130071C03Rik-204, intron 3 of 3)",13,83832340,83833336,997,1,Gm5452-201,39852,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,16,432789,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25793,cg26420776,0.0000221,0.00000561,3.933494561,0.000103355,gain,ns,0.00000681,0.00000953,0.713837363,0.475864845,pos,ns,0.003158634,0.002793016,1.130904239,0.258969548,pos,ns,0.586751302,0.0000621,0.0000961,0.646038306,0.518732492,pos,ns,0.097612053,Uncx,Uncx_Intergenic_downstream,5,139548714,139548763,139548762,139548763,50,+,GCTGCTGCGGGGACTGGGTTTCTTGCCCAAAGGGTTATTATACATTACCG,Distal Intergenic,5,139543898,139545268,1371,1,Uncx-202,4816,Uncx-201;Uncx-202,Uncx;Uncx,0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,59,88,22255,ENSMUSG00000029546,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
26002,cg01655437,-0.00000367,0.0000029,-1.263408376,0.207391783,loss,ns,0.00000352,0.00000493,0.713817785,0.475876936,pos,ns,0.001554736,0.001444682,1.076179172,0.282683948,pos,ns,0.548698853,0.00002,0.0000497,0.401813654,0.688098048,pos,ns,0.933819531,Ammecr1,Ammecr1_Exon,X,142855594,142855643,142855642,142855643,50,-,TGGCGATGAGCAAGGTATTCAGCATAGCTCAGGGTCATCTTTTCACTACG,"Exon (Ammecr1-201/Ammecr1, exon 6 of 6)",20,142851146,142966728,115583,2,Ammecr1-201,111085,Ammecr1-201,Ammecr1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,8,56068,ENSMUSG00000042225,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25788,cg02005728,-0.00000566,0.00000944,-0.599742968,0.549115652,loss,ns,0.0000114,0.000016,0.713794469,0.475891335,pos,ns,-0.005185404,0.0046992,-1.103465211,0.270681028,neg,ns,0.567542183,0.00028522,0.000161605,1.764920735,0.078561693,pos,ns,0.416192731,Uncx,Uncx_threeUTR,5,139548091,139548140,139548091,139548092,50,+,CGAGAATCCTCAGCCTTGTAAAATGCAAAAATGTCTAAGAATATTTATAT,3' UTR,5,139543494,139548179,4686,1,Uncx-201,4597,Uncx-201;Uncx-202,Uncx;Uncx,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,88,22255,ENSMUSG00000029546,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
27078,cg06842649,-0.00000608,0.00000424,-1.43534182,0.152197891,loss,ns,0.00000514,0.0000072,0.713734138,0.475928594,pos,ns,-0.0000561,0.00210993,-0.026582775,0.978809616,neg,ns,0.009301773,-0.000125839,0.0000726,-1.73427149,0.083863996,neg,ns,0.917509936,Cnksr2,Cnksr2_threeUTR,X,157834060,157834109,157834060,157834061,50,-,CGCAGTGTATTAGCCTAATATGATAAAGCAGTGATACAATATGATGAAAG,3' UTR,20,157821436,158043294,221859,2,Cnksr2-201,209185,Cnksr2-201;Cnksr2-202,Cnksr2;Cnksr2,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,11,245684,ENSMUSG00000025658,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18924,cg01316866,-0.000000574,0.00000319,-0.179972243,0.857291945,loss,ns,-0.00000387,0.00000542,-0.713677968,0.475963286,neg,ns,-0.004253277,0.001587653,-2.678972308,0.007778982,neg,ns,2.109077223,0.0000807,0.0000546,1.478921015,0.140176817,pos,ns,0.893394167,Mitf,Mitf_Exon,6,97941117,97941166,97941165,97941166,50,-,ATCTTGCTACGCCAGCAACTCATGCGTGAGCAGATGCAGGAGCAGGAGCG,"Exon (Mitf-207/Mitf, exon 2 of 10)",6,97807052,98018593,211542,1,Mitf-207,134065,Mitf-207;Mitf-206;Mitf-202;Mitf-203;Mitf-204,Mitf;Mitf;Mitf;Mitf;Mitf,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,16,17342,ENSMUSG00000035158,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4887,cg04241421,-0.00000341,0.0000013,-2.616467088,0.009319707,loss,ns,0.00000158,0.00000222,0.71353539,0.47605135,pos,ns,0.000544804,0.000648988,0.839467935,0.40185368,pos,ns,0.39593205,-0.0000267,0.0000223,-1.19533521,0.2328697,neg,ns,0.05023413,Snx17,Snx17_fiveUTR,5,31193857,31193906,31193905,31193906,50,+,TTGTGTCCTCAGGCCTATAACATTCACGTGAATGGAGTCCTGCACTGTCG,Promoter (<=1kb),5,31193227,31198900,5674,1,Snx17-201,630,Eif2b4-201;Eif2b4-203;Eif2b4-212;Eif2b4-202;Eif2b4-204;Eif2b4-211;Eif2b4-207;Eif2b4-205;Eif2b4-206;Eif2b4-208;Eif2b4-210;Eif2b4-209;Snx17-201;Snx17-205;Snx17-202;Snx17-204;Snx17-210;Snx17-208;Snx17-207;Snx17-211;Snx17-209;Snx17-206;Snx17-203,Eif2b4;Eif2b4;Eif2b4;Eif2b4;Eif2b4;Eif2b4;Eif2b4;Eif2b4;Eif2b4;Eif2b4;Eif2b4;Eif2b4;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17,-427;-718;-849;-843;-2210;-2996;-3941;-2706;-2658;-718;-858;-439;0;0;0;0;0;0;0;-937;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,4,266781,ENSMUSG00000029146,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
541,cg23580240,0.0000325,0.00000821,3.954907659,0.0000949,gain,ns,0.00000994,0.0000139,0.713334212,0.476175623,pos,ns,0.002991774,0.004083753,0.73260414,0.464353458,pos,ns,0.333151316,0.0000247,0.00014044,0.176007101,0.860403282,pos,ns,0.181528679,Dlx6,Dlx6_Promoter,6,6862189,6862238,6862189,6862190,50,-,CGCATGTATCATTTGCATATATTTGAAAGCATTACAGTAGCTTCTGTTTT,Promoter (1-2kb),6,6863334,6868568,5235,1,Dlx6-202,-1145,Dlx6-203;Dlx6-202;Dlx6-201;Dlx6-204,Dlx6;Dlx6;Dlx6;Dlx6,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,9,36,13396,ENSMUSG00000029754,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
8250,cg25492254,0.00000308,0.00000197,1.561532517,0.119418411,gain,ns,-0.00000239,0.00000335,-0.713316814,0.476186371,neg,ns,-0.000447555,0.000980239,-0.456577126,0.648294757,neg,ns,0.18822749,0.0000111,0.0000337,0.330715561,0.741082761,pos,ns,0.951747619,Jarid2,Jarid2_Exon,13,44903171,44903220,44903171,44903172,50,-,CGCTGGGGCCCCAACGTGCAGCGGCTGGCCTGCATCAAGAAGCACCTCAA,"Exon (Jarid2-210/Jarid2, exon 8 of 19)",13,44730774,44920108,189335,1,Jarid2-210,172397,Jarid2-210;Jarid2-201;Jarid2-209;Jarid2-208;Jarid2-216;Jarid2-211,Jarid2;Jarid2;Jarid2;Jarid2;Jarid2;Jarid2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,21,16468,ENSMUSG00000038518,conserved gene and region,13,44902883,44903193,311,*,311,24,0.623794212,0.793620415,0.077170418,7.45E-16,CpGisland,TRUE,U10,Tr-S
17251,cg24639882,-0.0000244,0.00000454,-5.385900601,0.000000143,loss,yes,-0.0000055,0.00000771,-0.71329335,0.476200867,neg,ns,-0.004552894,0.002257951,-2.016383269,0.044622047,neg,ns,1.350450509,-0.000141437,0.0000777,-1.821451444,0.069501938,neg,ns,0.866917287,Efna3,Efna3_threeUTR,3,89314649,89314698,89314649,89314650,50,-,CGGTCTCCAAAAGTGTCTGTGCGTTGCATAGGTCCTGTCTTCACAGAAGA,3' UTR,3,89313899,89322965,9067,2,Efna3-201,8267,Efna3-201;Efna3-203;Efna3-202,Efna3;Efna3;Efna3,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,6,13638,ENSMUSG00000028039,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1223,cg24156613,0.000149805,0.000012,12.47619076,3.18E-29,gain,yes,-0.0000146,0.0000204,-0.7132855,0.476205717,neg,ns,0.043627594,0.005976155,7.300278145,2.43E-12,pos,yes,11.6140274,0.000155511,0.000205519,0.756671831,0.449821167,pos,ns,0.311575969,Bcor,Bcor_Intron,X,12073806,12073855,12073854,12073855,50,+,GTCTCCTTTTTGCATGCAAATCAATATGGCAATTACCATCTAAAAGCTCG,"Intron (Bcor-202/Bcor, intron 1 of 14)",20,12036740,12080553,43814,2,Bcor-202,6698,Bcor-202;Bcor-203;Bcor-204;Bcor-206;Bcor-201;Bcor-207;Bcor-205,Bcor;Bcor;Bcor;Bcor;Bcor;Bcor;Bcor,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,56,74,71458,ENSMUSG00000040363,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
411,cg16787065,0.0000886,0.00000644,13.75868051,6.01E-34,gain,yes,-0.0000078,0.0000109,-0.713239927,0.476233872,neg,ns,0.003847907,0.003203528,1.201146417,0.23061132,pos,ns,0.637119378,0.000201793,0.000110169,1.831663985,0.067960936,pos,ns,0.17402584,Ovol1,Ovol1_Promoter,19,5560734,5560783,5560734,5560735,50,+,CGCATGCGTTGGGAAATAACGGTGACAACCCACCTATTTGTTACCTGTCG,Promoter (<=1kb),19,5549136,5560646,11511,2,Ovol1-201,-88,Ovol1-201;Ovol1-202,Ovol1;Ovol1,-88;-1331,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,2,2,18426,ENSMUSG00000024922,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
14062,cg13655737,0.0000654,0.0000105,6.219783455,1.61E-09,gain,yes,-0.0000127,0.0000179,-0.713233745,0.476237691,neg,ns,0.004768366,0.00523241,0.911313558,0.362838273,pos,ns,0.440286909,-0.000177672,0.000179942,-0.987382053,0.324225403,neg,ns,0.089770832,Slco3a1,Slco3a1_Exon,7,74554479,74554528,74554527,74554528,50,-,TGGAAAAGCAGGACACCTTCTTTTTCTTTTTCTTGTTCCTCTGCGCCTCG,Promoter (<=1kb),7,74275419,74554633,279215,2,Slco3a1-202,105,Slco3a1-202;Slco3a1-201;Slco3a1-203;Slco3a1-205;Slco3a1-207,Slco3a1;Slco3a1;Slco3a1;Slco3a1;Slco3a1,0;0;0;0;-1885,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,108116,ENSMUSG00000025790,conserved gene and region,7,74554522,74554768,247,*,247,43,0.801619433,1.120713306,0.174089069,5.35E-45,CpGisland,TRUE,U3,Pr-B
9853,cg04017541,0.0000188,0.0000108,1.733391004,0.08402052,gain,ns,0.0000131,0.0000184,0.713225606,0.476242719,pos,ns,0.013256455,0.005400021,2.454889361,0.014641943,pos,ns,1.83440128,-0.000427327,0.000185706,-2.301091563,0.022049688,neg,ns,0.342917435,Gm5040,Gm5040_Intergenic_upstream,10,51153785,51153834,51153785,51153786,50,+,CGTCCAGCAGGCATGCCCCCTGTTGCAGCTGCTCTGTCAATCTCATTTTG,Distal Intergenic,10,51238829,51239628,800,1,Gm5040-201,-84995,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,11,268300,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11758,cg27327396,-0.0000201,0.00000682,-2.943668793,0.003488507,loss,ns,-0.00000826,0.0000116,-0.713190242,0.476264569,neg,ns,-0.000955488,0.003394268,-0.281500446,0.778514398,neg,ns,0.108733351,-0.000161808,0.000116729,-1.386189775,0.166685179,neg,ns,0.822973559,Cdh23,Cdh23_Intron,10,60500177,60500226,60500177,60500178,50,+,CGGGTAATTTATGAATCAAATTGTGCTCCGTCAGGACTCTGCAGCCCAGA,"Intron (Cdh23-201/Cdh23, intron 8 of 66)",10,60302748,60657333,354586,2,Cdh23-201,157107,Cdh23-201;Cdh23-203;Cdh23-202;Cdh23-204;Cdh23-205;Cdh23-209;Cdh23-210,Cdh23;Cdh23;Cdh23;Cdh23;Cdh23;Cdh23;Cdh23,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,14,22295,ENSMUSG00000012819,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21669,cg09673180,-0.00000593,0.00000265,-2.236495364,0.026030362,loss,ns,-0.00000321,0.0000045,-0.713122689,0.476306307,neg,ns,0.001029039,0.001319552,0.77983969,0.436080222,pos,ns,0.36043361,-0.0000792,0.0000454,-1.745098821,0.081958553,neg,ns,0.949056759,Zfhx3,Zfhx3_Exon,8,108800319,108800368,108800319,108800320,50,-,CGTCTGCAACAAGTTCACGACGGACAACCTGGACATGCTGGGCCTGCACA,"Exon (Zfhx3-204/Zfhx3, exon 9 of 16)",8,107942644,108961630,1018987,1,Zfhx3-204,857675,Zfhx3-204;Zfhx3-202;Zfhx3-201,Zfhx3;Zfhx3;Zfhx3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,Exon,46,177,11906,ENSMUSG00000038872,conserved gene and region,8,108800199,108800500,302,*,302,21,0.612582782,0.741407529,0.069536424,5.06E-13,CpGisland,TRUE,U11,Tr-P
2675,cg05605496,0.0000144,0.00000352,4.092102281,0.0000546,gain,ns,-0.00000427,0.00000598,-0.713120594,0.476307601,neg,ns,0.003561402,0.001753083,2.031507975,0.04305619,pos,ns,1.365964405,-0.000108654,0.0000603,-1.802243489,0.072478381,neg,ns,0.903794845,Vps54,Vps54_Exon,11,21277767,21277816,21277767,21277768,50,-,CGAGTTGCAGGACTACCTCAGGAAAACTTCCCAGGCTGTAAAAATGCTTC,"Exon (Vps54-202/Vps54, exon 7 of 23)",11,21239281,21321122,81842,1,Vps54-202,38486,Gm12039-201;Vps54-202;Vps54-201;Vps54-203;Vps54-204,Gm12039;Vps54;Vps54;Vps54;Vps54,2408;0;0;0;-87,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,245944,ENSMUSG00000020128,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24241,cg03536788,-0.00000534,0.00000458,-1.164684439,0.245042234,loss,ns,0.00000555,0.00000778,0.713093553,0.476324309,pos,ns,-0.0044051,0.002279969,-1.932087062,0.054259773,neg,ns,1.265522031,0.000037,0.0000784,0.472433471,0.63694983,pos,ns,0.905068658,Fgf14,Fgf14_Exon,14,124136212,124136261,124136212,124136213,50,+,CGAGAGCTCCATCGGGGTGCATTTGCAAGTAGTAGCCTTGCCTGCAATAT,"Exon (Fgf14-202/Fgf14, exon 2 of 5)",14,123977907,124677127,699221,2,Fgf14-202,540866,Fgf14-202;Fgf14-201,Fgf14;Fgf14,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,9,14169,ENSMUSG00000025551,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12948,cg08447038,-0.0000166,0.00000849,-1.955405958,0.051433341,loss,ns,-0.0000103,0.0000144,-0.71308116,0.476331966,neg,ns,-0.006841814,0.004224544,-1.619538966,0.106348172,neg,ns,0.973269972,-0.0000343,0.000145282,-0.236040541,0.813557085,neg,ns,0.786509953,Gm46476,Gm46476_Intergenic_upstream,14,68696111,68696160,68696159,68696160,50,-,ATTCAGCTGGGAGCTTCCAGTTGTGGGAAATGAGGCACAAGGCAAACACG,Distal Intergenic,14,68731954,68732356,403,1,Gm46476-201,-35843,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,108168192,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7997,cg00272971,0.0000653,0.00000765,8.537808297,6.23E-16,gain,yes,0.00000927,0.000013,0.713050914,0.476350655,pos,ns,0.010860553,0.003807695,2.852264506,0.004632542,pos,ns,2.334180667,-0.0000878,0.000130946,-0.670478862,0.50305176,neg,ns,0.177651518,Pax2,Pax2_Intergenic_upstream,19,44675022,44675071,44675070,44675071,50,+,GTGCAAATTCCTGGCATCTTTACTAGTTGCAGCCAATTTCGGCGATTTCG,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-80974,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,19,44675061,44675159,99,*,99,13,0.696969697,1.086993243,0.131313131,7.58E-12,CpGisland,TRUE,U13,Hc-P
10239,cg17866805,0.0000183,0.00000205,8.940030064,3.58E-17,gain,yes,-0.00000249,0.00000349,-0.713019362,0.476370151,neg,ns,0.003413248,0.001021427,3.341645107,0.000934749,pos,ns,3.029305087,-0.00000359,0.0000351,-0.10230477,0.918580913,neg,ns,0.053979417,Hoxa13,Hoxa13_Exon,6,52259888,52259937,52259936,52259937,50,+,GGGGAGGCTGCGCCTGCTCTTTGGGGCAGTACATTTGGCCGTTCCAGCCG,Promoter (<=1kb),6,52257694,52260803,3110,2,Hoxa13-203,866,Hoxa13-203;Hoxa13-201;Hoxa13-202;Hoxa13-204;Hoxa13-205;Hoxa13-206,Hoxa13;Hoxa13;Hoxa13;Hoxa13;Hoxa13;Hoxa13,0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,12,15398,ENSMUSG00000038203,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16477,cg08912313,-0.00000917,0.00000648,-1.415293029,0.15798638,loss,ns,-0.00000785,0.000011,-0.712998964,0.476382755,neg,ns,0.000775864,0.003225419,0.240546781,0.810065402,pos,ns,0.091479916,-0.0001829,0.000110922,-1.648911593,0.100178724,neg,ns,0.872097903,Cntln,Cntln_Intron,4,85130145,85130194,85130193,85130194,50,-,AGATTACATCATTAACATGGTCAGTAAACCATGAATTGTTCAATAAGGCG,"Intron (Cntln-201/Cntln, intron 25 of 25)",4,84884309,85131921,247613,1,Cntln-201,245836,Cntln-201;Cntln-204;Cntln-203,Cntln;Cntln;Cntln,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,25,338349,ENSMUSG00000038070,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27941,cg01361776,-0.00000552,0.00000244,-2.264175175,0.024253969,loss,ns,0.00000295,0.00000414,0.712918924,0.476432215,pos,ns,0.002533017,0.001212348,2.089347695,0.037491483,pos,ns,1.426067379,-0.000104145,0.0000417,-2.497925823,0.013010152,neg,ns,0.943725457,Rps6kc1,Rps6kc1_threeUTR,1,190798725,190798774,190798725,190798726,50,-,CGTTAGCTGAATGTGTCCTAAAAACAAAACGACAGGAGAAATCAAAACAT,3' UTR,1,190700202,190911747,211546,2,Rps6kc1-204,112973,Rps6kc1-204;Rps6kc1-206;Rps6kc1-203;Rps6kc1-201;Rps6kc1-205;Rps6kc1-208,Rps6kc1;Rps6kc1;Rps6kc1;Rps6kc1;Rps6kc1;Rps6kc1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,29,320119,ENSMUSG00000089872,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8876,cg05787835,-0.0000114,0.0000048,-2.378276663,0.017999494,loss,ns,0.00000582,0.00000816,0.712787184,0.476513629,pos,ns,0.004465218,0.002390639,1.867793184,0.062734291,pos,ns,1.202495009,-0.000262751,0.0000822,-3.195949234,0.001537373,neg,ns,0.886262883,Cyfip2,Cyfip2_Exon,11,46196397,46196446,46196445,46196446,50,-,TTCAGGATGGCAAAAACCTCATTGTTCAAGATCTGATACTTCCTGATCCG,"Exon (Cyfip2-205/Cyfip2, exon 31 of 31)",11,46193850,46312358,118509,2,Cyfip2-205,115912,Cyfip2-205;Cyfip2-201;Cyfip2-202;Cyfip2-204,Cyfip2;Cyfip2;Cyfip2;Cyfip2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,8,76884,ENSMUSG00000020340,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2186,cg04812757,-0.0000392,0.0000105,-3.741007713,0.000218321,loss,ns,0.0000127,0.0000178,0.712492111,0.476696008,pos,ns,-0.011547015,0.005216302,-2.213640098,0.027581272,neg,ns,1.559385709,-0.000155847,0.000179388,-0.868769752,0.385645177,neg,ns,0.776225546,Defb41,Defb41_Intergenic_upstream,1,18308020,18308069,18308020,18308021,50,+,CGACTCCAGATTTCAGACTACATAGCCTGGCAGTTTTCTACAAGAACCAA,Distal Intergenic,1,18250980,18265138,14159,2,Defb41-201,-42882,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,6,77673,ENSMUSG00000067773,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27028,cg17088220,0.0000125,0.000013,0.967719373,0.33393891,gain,ns,-0.0000157,0.000022,-0.712451065,0.476721381,neg,ns,0.025404279,0.006450069,3.938605468,0.000101281,pos,ns,3.994470414,-0.003198332,0.000221817,-14.41876291,2.02E-36,neg,yes,0.692059824,Abl2,Abl2_Exon,1,156642039,156642088,156642087,156642088,50,+,TTCAAGCTCTTATCTGAGCATCAGGTCACATCCTCTGGAGACAAGGACCG,"Exon (Abl2-202/Abl2, exon 13 of 13)",1,156558987,156649568,90582,1,Abl2-202,83052,Abl2-202;Abl2-201,Abl2;Abl2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,11352,ENSMUSG00000026596,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7894,cg00351264,-0.0000358,0.00000634,-5.644308855,3.75E-08,loss,yes,0.00000767,0.0000108,0.71225762,0.47684097,pos,ns,-0.000700575,0.003153692,-0.222144326,0.824347809,neg,ns,0.083889512,-0.000179114,0.000108455,-1.651506564,0.099647752,neg,ns,0.86180105,Pax5,Pax5_Intron,4,44623177,44623226,44623225,44623226,50,-,AATTTTCCCATTACTGGGAGTAAGTACTGTTGGGACTCTGTAATGGCCCG,"Intron (Pax5-201/Pax5, intron 6 of 9)",4,44524757,44710487,185731,2,Pax5-201,87261,Pax5-201;Pax5-202;Pax5-203;Pax5-204;Pax5-205;Pax5-207;Pax5-206;Pax5-209;Pax5-210;Pax5-212;Pax5-213;Pax5-214;Pax5-215;Pax5-220;Pax5-211,Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,19,45,18507,ENSMUSG00000014030,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11311,cg17369307,-0.0000316,0.00000641,-4.939145963,0.00000129,loss,yes,0.00000775,0.0000109,0.712204764,0.476873648,pos,ns,-0.008467778,0.003188795,-2.655479235,0.008328922,neg,ns,2.079411216,0.000189004,0.000109662,1.723509665,0.085793469,pos,ns,0.820967533,Gm2568,Gm2568_Promoter,12,57530541,57530590,57530589,57530590,50,-,GAAGTCCTTACAAAACAACTTTTATACGCTTTAATTAAAAACGTGTTCCG,Promoter (9-10kb),12,57519043,57520624,1582,2,Gm2568-201,-9966,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,2,102632291,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14821,cg14458317,0.00000891,0.00000794,1.121187335,0.263075891,gain,ns,-0.00000961,0.0000135,-0.712116538,0.476928198,neg,ns,0.017661376,0.003953491,4.46728647,0.0000111,pos,ns,4.954100376,-0.000683118,0.00013596,-5.024399564,0.000000855,neg,yes,0.869956945,Pipox,Pipox_Intron,11,77885241,77885290,77885241,77885242,50,-,CGTAATAGCCTATAATGGAGTCTCATGGATATTACATGCTTCCAAATCCC,"Intron (Pipox-201/Pipox, intron 2 of 7)",11,77880615,77894096,13482,2,Pipox-201,8806,Pipox-201;Pipox-202;Pipox-203,Pipox;Pipox;Pipox,0;-2555;-697,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,6,19193,ENSMUSG00000017453,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9970,cg24574398,-0.00000363,0.00000181,-2.004683185,0.045866231,loss,ns,-0.00000219,0.00000308,-0.712002255,0.476998863,neg,ns,-0.00000837,0.000900956,-0.009287151,0.992596006,neg,ns,0.003227477,-0.0000424,0.000031,-1.369572513,0.171811655,neg,ns,0.954174245,Satb1,Satb1_Intron,17,51766507,51766556,51766555,51766556,50,+,AAACATTTCAAGAGCCCTGTAATTTCCAATCAAAATTACAGTAATTTCCG,"Intron (Satb1-208/Satb1, intron 9 of 10)",17,51736187,51832672,96486,2,Satb1-208,66116,Satb1-208;Satb1-213;Satb1-204;Satb1-214;Satb1-203;Satb1-211;Satb1-207,Satb1;Satb1;Satb1;Satb1;Satb1;Satb1;Satb1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,28,36,20230,ENSMUSG00000023927,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26732,cg16413495,0.000000477,0.00000625,0.076333302,0.939203171,gain,ns,-0.00000756,0.0000106,-0.711884175,0.477071882,neg,ns,-0.006379964,0.003110028,-2.051417159,0.041066347,neg,ns,1.386513929,0.000123469,0.000106954,1.154413384,0.249219874,pos,ns,0.81729001,Huwe1,Huwe1_Exon,X,151907362,151907411,151907362,151907363,50,+,CGCTTCTCCCTTGGTCCGATTTGAGCGCTTTGACCGGGAGGATGATCTCA,"Exon (Huwe1-201/Huwe1, exon 54 of 83)",20,151803327,151935417,132091,1,Huwe1-201,104035,Huwe1-201;Huwe1-202;Huwe1-219;Huwe1-208;Huwe1-215,Huwe1;Huwe1;Huwe1;Huwe1;Huwe1,0;0;0;-1434;-1434,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,22,28,59026,ENSMUSG00000025261,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15549,cg12036175,-0.00000994,0.00000985,-1.008968119,0.313776804,loss,ns,-0.0000119,0.0000167,-0.711797032,0.477125775,neg,ns,-0.006378108,0.004901779,-1.301182304,0.194162312,neg,ns,0.711835064,-0.0000886,0.000168572,-0.525807256,0.599398055,neg,ns,0.847065223,Homer2,Homer2_Intron,7,81698442,81698491,81698490,81698491,50,+,AATTTAAATAAATTCTACCAGAATGATACCATATGACTAACAGCACCCCG,"Intron (Homer2-206/Homer2, intron 1 of 8)",7,81609730,81706809,97080,2,Homer2-206,8318,Homer2-206;Homer2-201;Homer2-205;Homer2-203;Homer2-204,Homer2;Homer2;Homer2;Homer2;Homer2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,26557,ENSMUSG00000025813,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5220,cg06635150,0.0000843,0.0000174,4.840101953,0.00000205,gain,ns,0.0000211,0.0000296,0.711689739,0.477192133,pos,ns,0.019275035,0.008668314,2.223619757,0.026894487,pos,ns,1.570336738,-0.000427371,0.000298103,-1.433638422,0.1526833,neg,ns,0.244356752,Gm12112,Gm12112_Intron,11,32925882,32925931,32925882,32925883,50,+,CGCTCCGCCAGGAGCAGCCCTGGGCCGCAGCTTTATTTTATAAACACATT,"Intron (Gm12111-201/Gm12111-201, intron 1 of 2)",11,32910373,32910603,231,1,Gm12112-201,15509,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,,NA,mapped to different genes,11,32925882,32926151,270,*,270,19,0.618518519,0.743478261,0.07037037,6.30E-12,CpGisland,TRUE,NA,NRS
24332,cg15170459,0.00000484,0.0000023,2.107655871,0.035863435,gain,ns,-0.00000278,0.0000039,-0.711554945,0.477275507,neg,ns,0.004035557,0.00114259,3.531936476,0.000475219,pos,ns,3.323105798,-0.000100377,0.0000393,-2.554538568,0.011110593,neg,ns,0.038333376,Pou3f1,Pou3f1_Intergenic_downstream,4,124672344,124672393,124672392,124672393,50,-,CTCTGACTCCCTGGCAGGGAGGAACTGGGCATTGTTGCCAAAAATAAACG,Distal Intergenic,4,124656807,124660655,3849,1,Pou3f1-201,15586,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,11,85,18991,ENSMUSG00000090125,mapped to different genes,4,124672392,124672501,110,*,110,9,0.609090909,0.906593407,0.081818182,0.00000205,CpGisland,TRUE,U13,Hc-P
4946,cg13076512,0.0000142,0.0000053,2.669551244,0.007995465,gain,ns,-0.00000641,0.00000901,-0.71121812,0.477483878,neg,ns,0.003566485,0.002640198,1.350840128,0.177731808,pos,ns,0.75023484,-0.000107767,0.0000908,-1.186906837,0.236173119,neg,ns,0.909536146,Ass1,Ass1_Exon,2,31510069,31510118,31510117,31510118,50,+,CTCTTTTTTCTCCTTTTCCCCCTGCCTGGAAAAATGGCTAGGTATCTACG,"Exon (Ass1-201/Ass1, exon 13 of 16)",2,31470207,31520672,50466,1,Ass1-201,39862,Ass1-201;Ass1-202;Ass1-204,Ass1;Ass1;Ass1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,9,11898,ENSMUSG00000076441,conserved gene and region,2,31510117,31510287,171,*,171,10,0.578947368,0.714285714,0.058479532,0.00000878,CpGisland,TRUE,U10,Tr-S
27689,cg15323015,-0.0000174,0.00000629,-2.769935574,0.005944852,loss,ns,0.0000076,0.0000107,0.711147903,0.477527323,pos,ns,-0.00564655,0.003132886,-1.802347788,0.07246194,neg,ns,1.139890045,-0.000209905,0.00010774,-1.948260317,0.052285984,neg,ns,0.761576317,Akt3,Akt3_Exon,1,177248667,177248716,177248715,177248716,50,+,AGCACTTACCCCTCTTCTGAACCCAACCTTCTTTCACAATGGTAACATCG,Promoter (<=1kb),1,177020073,177248805,228733,2,Akt3-201,89,Akt3-201;Akt3-203;Akt3-202;Akt3-204,Akt3;Akt3;Akt3;Akt3,0;0;0;8876,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,14,23797,ENSMUSG00000019699,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22709,cg06165608,0.00000458,0.00000224,2.049219442,0.041282085,gain,ns,0.0000027,0.0000038,0.711088781,0.477563905,pos,ns,-0.000595837,0.001112846,-0.535417236,0.592745261,neg,ns,0.227131909,0.00000241,0.0000383,0.063021547,0.949789962,pos,ns,0.954114469,Sox6,Sox6_Exon,7,115777176,115777225,115777176,115777177,50,-,CGACTCCCTTCGTCAGGCTTATGTGGTGAGGTAGAGGTATTTCGGAAGGA,"Exon (Sox6-210/Sox6, exon 4 of 16)",7,115470872,116031047,560176,2,Sox6-210,253822,Sox6-210;Sox6-201;Sox6-202;Sox6-204;Sox6-205;Sox6-203;Sox6-212;Sox6-206;Sox6-209;Sox6-214;Sox6-211,Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,57,20679,ENSMUSG00000051910,conserved gene and region,7,115777065,115777219,155,*,155,11,0.529032258,1.044730392,0.070967742,0.000000389,CpGisland,TRUE,NA,NRS
2362,cg05185512,-0.00002,0.00000318,-6.276742825,1.16E-09,loss,yes,-0.00000385,0.00000541,-0.710968642,0.477638246,neg,ns,-0.00326582,0.001584556,-2.061031357,0.040133823,neg,ns,1.396489471,0.000028,0.0000545,0.513231695,0.608154816,pos,ns,0.933359539,Meis1,Meis1_Intergenic_upstream,11,19138514,19138563,19138562,19138563,50,-,ATACTGCGAGGCAGAAACATGTGGACACAGCTGGAGTGTCATGTGTCACG,Distal Intergenic,11,18879817,19018985,139169,2,Meis1-206,-119578,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,88,17268,ENSMUSG00000020160,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14251,cg26655322,-0.00000121,0.00000161,-0.749313983,0.454236198,loss,ns,-0.00000195,0.00000274,-0.710958486,0.47764453,neg,ns,0.000939588,0.000801634,1.172090908,0.242060535,pos,ns,0.616076012,-0.0000196,0.0000276,-0.709333542,0.478650663,neg,ns,0.053642455,Ihh,Ihh_Intron,1,74949830,74949879,74949830,74949831,50,+,CGCTGTCAATGATTGCCCAGCCCGTGGCCCGGATCCTTATCTGCATTCCT,"Intron (Ihh-201/Ihh, intron 1 of 2)",1,74945315,74951672,6358,2,Ihh-201,1793,Ihh-201;Ihh-202,Ihh;Ihh,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,3,16147,ENSMUSG00000006538,conserved gene and region,1,74949700,74949967,268,*,268,22,0.671641791,0.754832928,0.082089552,3.69E-15,CpGisland,TRUE,U3,Pr-B
12745,cg25069748,-0.00000345,0.0000017,-2.031480314,0.04305901,loss,ns,0.00000205,0.00000288,0.710947886,0.47765109,pos,ns,-0.0000427,0.000844278,-0.050552122,0.959714971,neg,ns,0.01785773,0.0000198,0.000029,0.683176072,0.495005849,pos,ns,0.9542686,Tpm1,Tpm1_threeUTR,9,67033889,67033938,67033889,67033890,50,-,CGGTCGGCATCTTCAGCAATGTGCTTGGCCTCTTTCAGTTGGATCTCCTG,3' UTR,9,67022590,67043907,21318,2,Tpm1-212,9969,Tpm1-212;Tpm1-215;Tpm1-216;Tpm1-211;Tpm1-209;Tpm1-202;Tpm1-218;Tpm1-214;Tpm1-213;Tpm1-220;Tpm1-210;Tpm1-208;Tpm1-205;Tpm1-203;Tpm1-206;Tpm1-207;Tpm1-204;Tpm1-201;Tpm1-221;Tpm1-217;Tpm1-219,Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,10,22003,ENSMUSG00000032366,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13623,cg03436378,0.0000525,0.0000124,4.238484393,0.0000297,gain,ns,0.000015,0.000021,0.710868294,0.477700345,pos,ns,0.001832999,0.006163316,0.297404728,0.76635673,pos,ns,0.115569024,-0.0000185,0.000211956,-0.08740978,0.930402231,neg,ns,0.32803998,Dlx1,Dlx1_Intergenic_downstream,2,71537989,71538038,71537989,71537990,50,+,CGCTGATGACATTGTGCACTCGAGATCTTGGTAATCTTTGGGAAAATTAT,Distal Intergenic,2,71530780,71532689,1910,1,Dlx1-206,7209,Dlx1-201;Dlx1-203,Dlx1;Dlx1,0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,36,13390,ENSMUSG00000041911,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
1945,cg02095722,-0.0000038,0.00000239,-1.591518924,0.112512017,loss,ns,0.00000288,0.00000406,0.710658946,0.477829912,pos,ns,-0.001771279,0.001188203,-1.4907202,0.137051763,neg,ns,0.863115374,0.000014,0.0000409,0.342535631,0.732179966,pos,ns,0.925404361,Arhgap35,Arhgap35_fiveUTR,7,16565094,16565143,16565142,16565143,50,-,GTTGTAGGTGGGAATTCGGACATCTTGCTTTCTTGCCATCATCATCGTCG,5' UTR,7,16493719,16614993,121275,2,Arhgap35-201,49850,Arhgap35-201;Arhgap35-202,Arhgap35;Arhgap35,0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,5,232906,ENSMUSG00000058230,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4543,cg06392318,0.0000251,0.00000316,7.941364291,3.71E-14,gain,yes,0.00000382,0.00000537,0.71058687,0.477874525,pos,ns,0.002220305,0.00157322,1.411312424,0.159155343,pos,ns,0.798178778,-0.000000282,0.0000541,-0.005210376,0.995846091,neg,ns,0.043858587,Rspo3,Rspo3_Promoter,10,29535953,29536002,29535953,29535954,50,+,CGACCTCAATAACTTTCAATTTCAAGAGGGAAAGAGGGAGCTGGAAAAGT,Promoter (<=1kb),10,29452418,29535867,83450,2,Rspo3-201,-86,Rspo3-201,Rspo3,0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,1,2,72780,ENSMUSG00000019880,conserved gene and region,10,29535895,29535954,60,*,60,7,0.783333333,0.950226244,0.116666667,0.00000466,CpGisland,TRUE,U3,Pr-B
27862,cg18891224,-0.00000789,0.0000049,-1.611136806,0.108167571,loss,ns,-0.00000591,0.00000832,-0.710495419,0.477931134,neg,ns,0.000994956,0.002437421,0.408200263,0.683408455,pos,ns,0.165319653,-0.0000956,0.0000838,-1.140428105,0.254988292,neg,ns,0.913767488,Ush2a,Ush2a_Intron,1,188727189,188727238,188727237,188727238,50,-,GAAATTTCAATTGAAAAACTTAACAGCCCTTCAAATTGCAGAATTTAACG,"Intron (Ush2a-201/Ush2a, intron 39 of 70)",1,188263034,188965041,702008,1,Ush2a-201,464155,Ush2a-201,Ush2a,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,33,36,22283,ENSMUSG00000026609,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18129,cg13077301,0.0000237,0.00000664,3.575964289,0.000404631,gain,ns,-0.00000802,0.0000113,-0.710483754,0.477938355,neg,ns,0.012878086,0.003305434,3.896034442,0.000119829,pos,ns,3.921438844,-0.000232674,0.000113674,-2.046861545,0.041514618,neg,ns,0.857283015,Spag9,Spag9_Exon,11,94044453,94044502,94044501,94044502,50,+,TTTTGCTGCTTGTGCACTTTTCTATTTCTACCGGTGTGCCAGCTCTGACG,"Exon (Spag9-207/Spag9, exon 1 of 16)",11,93996103,94050649,54547,1,Spag9-208,48350,Spag9-209;Spag9-208;Spag9-202;Spag9-212;Spag9-207;Spag9-206;Spag9-203;Spag9-204;Spag9-205;Spag9-201,Spag9;Spag9;Spag9;Spag9;Spag9;Spag9;Spag9;Spag9;Spag9;Spag9,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,6,70834,ENSMUSG00000020859,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
7938,cg05347832,0.0000153,0.0000104,1.475227587,0.141166271,gain,ns,-0.0000125,0.0000176,-0.710423597,0.477975594,neg,ns,0.013642573,0.005153831,2.647074067,0.008534008,pos,ns,2.068846943,-0.000543783,0.00017724,-3.068060859,0.002344678,neg,ns,0.524714821,Ebf1,Ebf1_Intron,11,44643269,44643318,44643269,44643270,50,+,CGTTGATTGCCAGGTATGGCTTTGTGGTAATTCTAGCATTTGCAACCCAG,"Intron (Ebf1-203/Ebf1, intron 5 of 15)",11,44617317,45004995,387679,1,Ebf1-203,25952,Ebf1-203;Ebf1-202;Ebf1-201;Ebf1-207;Ebf1-204;Ebf1-205,Ebf1;Ebf1;Ebf1;Ebf1;Ebf1;Ebf1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,80,13591,ENSMUSG00000057098,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24754,cg17675822,-0.0000172,0.00000588,-2.922277391,0.003730288,loss,ns,-0.0000071,0.00001,-0.710379551,0.478002862,neg,ns,-0.004045484,0.002928705,-1.381321763,0.168174864,neg,ns,0.774238916,-0.000131208,0.000100718,-1.302726873,0.193634922,neg,ns,0.047928494,Pan2,Pan2_fiveUTR,10,128303454,128303503,128303454,128303455,50,-,CGCCATGGAGAAATCTTGGTAATGACCCATTCCCCGTAAGCATCCCAGGA,Promoter (<=1kb),10,128303335,128321353,18019,1,Pan2-201,119,Il23a-202;Pan2-201;Pan2-204;Pan2-203;Pan2-207;Pan2-206;Pan2-202;Pan2-205,Il23a;Pan2;Pan2;Pan2;Pan2;Pan2;Pan2;Pan2,-4702;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,4,103135,ENSMUSG00000005682,conserved gene and region,10,128303287,128303662,376,*,376,23,0.561170213,0.786324786,0.061170213,5.25E-13,CpGisland,TRUE,U1,Pr-A
12974,cg06773790,-0.000000947,0.00000123,-0.772880089,0.440182234,loss,ns,-0.00000148,0.00000208,-0.710260879,0.478076332,neg,ns,-0.000320428,0.000609942,-0.525341628,0.599721262,neg,ns,0.222050554,0.000000852,0.000021,0.040602697,0.967638771,pos,ns,0.969187288,Gm5342,Gm5342_Intergenic_upstream,7,68983209,68983258,68983257,68983258,50,+,TTTTGCTCACTTATTCCCAAACGCTTTGCTGGTGCTAAGCAGACATCCCG,Distal Intergenic,7,69209884,69210886,1003,1,Gm5342-201,-226626,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,7,384741,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12975,cg23405680,0.00000449,0.00000621,0.721988353,0.470845878,gain,ns,-0.0000075,0.0000106,-0.710113525,0.478167568,neg,ns,0.001357671,0.003092172,0.439066957,0.660918894,pos,ns,0.179851833,0.0000716,0.00010634,0.673252328,0.501288375,pos,ns,0.90202863,Gm5342,Gm5342_Intergenic_upstream,7,68983273,68983322,68983273,68983274,50,-,CGGGTGTTCGTGTCCACTCATAGCCCCAGCCTAATCAGAGGTTATTAAGG,Distal Intergenic,7,69209884,69210886,1003,1,Gm5342-201,-226611,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,7,384741,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20776,cg04378487,-0.00000494,0.00000232,-2.128641649,0.034072162,loss,ns,-0.0000028,0.00000394,-0.710079901,0.478188388,neg,ns,-0.001043552,0.001154808,-0.903658199,0.366878342,neg,ns,0.435477925,-0.0000339,0.0000397,-0.854795131,0.39332469,neg,ns,0.946877083,Wt1,Wt1_Exon,2,105169974,105170023,105170022,105170023,50,+,CCGACCACCTGAAGACCCACACCAGGACTCATACAGGTAAAACAAGTGCG,"Exon (Wt1-205/Wt1, exon 9 of 10)",2,105126529,105173612,47084,1,Wt1-205,43445,Wt1-205;Wt1-207;Wt1-203;Wt1-204;Wt1-201;Wt1-202;Wt1-208,Wt1;Wt1;Wt1;Wt1;Wt1;Wt1;Wt1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,6,22431,ENSMUSG00000016458,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17773,cg17466139,-0.00000136,0.000000567,-2.40033532,0.016969401,loss,ns,0.000000684,0.000000963,0.710075531,0.478191094,pos,ns,-0.000516532,0.000282084,-1.831129253,0.068040917,neg,ns,1.167229841,0.0000071,0.0000097,0.732237548,0.464576821,pos,ns,0.986524283,Son,Son_threeUTR,16,91662571,91662620,91662571,91662572,50,+,CGCCTACAGTTTCGTTTCCATTCACGACGCGTTCACTGATCGCCACGAGT,3' UTR,16,91647506,91679207,31702,1,Son-203,15065,Son-203;Son-204;Son-202;Son-208;Son-201;Son-205;Son-212;Son-207,Son;Son;Son;Son;Son;Son;Son;Son,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,14,31,20658,ENSMUSG00000022961,conserved gene and region,16,91662523,91662634,112,*,112,9,0.508928571,1.26,0.080357143,0.00000238,CpGisland,TRUE,U10,Tr-S
13392,cg22249017,0.0000725,0.00000977,7.41328175,1.18E-12,gain,yes,-0.0000118,0.0000166,-0.709948054,0.478270033,neg,ns,0.007752153,0.004865042,1.593440146,0.112080542,pos,ns,0.950469777,-0.000074,0.000167308,-0.442131938,0.658702023,neg,ns,0.046747734,Nr2f2,Nr2f2_fiveUTR,7,70359878,70359927,70359926,70359927,50,-,AGGCCGATACCTTCCCGTCTCATGCCCACTTTGAGGCACTTTTTGAGGCG,Promoter (<=1kb),7,70357763,70359921,2159,2,Nr2f2-204,0,Nr2f2-201;Nr2f2-203;Nr2f2-202;Nr2f2-205;Nr2f2-204;Nr2f2-206,Nr2f2;Nr2f2;Nr2f2;Nr2f2;Nr2f2;Nr2f2,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,69,11819,ENSMUSG00000030551,conserved gene but different region,7,70359750,70360467,718,*,718,76,0.703342618,0.857367313,0.105849582,8.30E-60,CpGisland,TRUE,U1,Pr-A
27675,cg04546455,-0.0000207,0.0000055,-3.763298029,0.000200521,loss,ns,-0.00000663,0.00000934,-0.709872283,0.478316957,neg,ns,-0.006233815,0.002735787,-2.278618299,0.023369695,neg,ns,1.631346963,0.000225947,0.0000941,2.401555856,0.016913954,pos,ns,0.864081961,Sdccag8,Sdccag8_Intron,1,176994933,176994982,176994933,176994934,50,+,CGTGTTGGTACAGGCAGTTGTTTGAGCTCTCTCTAAATGGCTTCAGGAGA,"Intron (Sdccag8-201/Sdccag8, intron 16 of 17)",1,176814660,177020437,205778,1,Sdccag8-201,180273,Sdccag8-201;Sdccag8-203;Sdccag8-205,Sdccag8;Sdccag8;Sdccag8,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,20,76816,ENSMUSG00000026504,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
13063,cg17547769,-0.00000303,0.00000114,-2.648052916,0.008509893,loss,ns,0.00000138,0.00000194,0.709836717,0.478338983,pos,ns,0.000698359,0.000568764,1.227855044,0.220432871,pos,ns,0.656723644,-0.0000377,0.0000196,-1.925981454,0.055020972,neg,ns,0.968728285,Rora,Rora_Intron,9,69347904,69347953,69347952,69347953,50,-,ACACCTTCTCAAATGACCCATTTTAATAACCCGAAAGCTATTATATAACG,"Intron (Rora-201/Rora, intron 2 of 10)",9,68653786,69388246,734461,1,Rora-201,694118,Rora-201;Rora-206;Rora-202,Rora;Rora;Rora,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,19,19883,ENSMUSG00000032238,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3358,cg24491929,-0.0000069,0.00000301,-2.294097714,0.02245332,loss,ns,-0.00000362,0.00000511,-0.709619098,0.478473768,neg,ns,-0.00029992,0.001496264,-0.200445907,0.841263297,neg,ns,0.075068058,0.0000191,0.0000515,0.37168292,0.710382862,pos,ns,0.905374288,Srrm2,Srrm2_threeUTR,17,23811818,23811867,23811818,23811819,50,-,CGCTGCACAGACCATTCGGAAGACACGGTCCCTGCCCTCTAGGAGCTGAC,3' UTR,17,23803187,23824736,21550,1,Srrm2-210,8631,Gm49911-201;Srrm2-206;Srrm2-210;Srrm2-201;Srrm2-212;Srrm2-211;Srrm2-208;Srrm2-203;Srrm2-207,Gm49911;Srrm2;Srrm2;Srrm2;Srrm2;Srrm2;Srrm2;Srrm2;Srrm2,1633;0;0;0;0;0;0;0;-33,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,13,75956,ENSMUSG00000039218,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18184,cg19656359,-0.000115586,0.0000104,-11.09830336,2.54E-24,loss,yes,0.0000126,0.0000177,0.709574543,0.478501367,pos,ns,0.025257797,0.005183508,4.872722961,0.00000176,pos,ns,5.754654143,-0.000927541,0.00017826,-5.203291427,0.000000357,neg,yes,0.727246839,Ap3b1,Ap3b1_Intron,13,94415551,94415600,94415599,94415600,50,-,CTTGGAGCACAGCTAATGGCTGAAGTTCATAGCAACAGCACAGAAAAACG,"Intron (Ap3b1-201/Ap3b1, intron 6 of 26)",13,94358960,94566317,207358,1,Ap3b1-201,56591,Ap3b1-201,Ap3b1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,55,11774,ENSMUSG00000021686,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17610,cg19729765,-0.0000123,0.00000833,-1.47631545,0.140874278,loss,ns,-0.00001,0.0000141,-0.709553073,0.478514666,neg,ns,-0.008666641,0.004144962,-2.090885405,0.037352353,neg,ns,1.427682034,0.00016054,0.000142545,1.126243778,0.260933446,pos,ns,0.779153514,Elavl2,Elavl2_threeUTR,4,91252563,91252612,91252611,91252612,50,-,AAACCCACATCAAAGAGGCTCTTATCTCTTTGGCAAGGTACTGCTTTACG,3' UTR,4,91250763,91372034,121272,2,Elavl2-204,119422,Elavl2-204;Elavl2-201;Elavl2-207;Elavl2-208;Elavl2-202;Elavl2-209;Elavl2-210;Elavl2-206;Elavl2-203;Elavl2-205,Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,31,15569,ENSMUSG00000008489,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4354,cg15051960,0.0000806,0.0000142,5.682415758,3.06E-08,gain,yes,-0.0000171,0.0000241,-0.709430199,0.478590782,neg,ns,0.010736577,0.007058068,1.521177867,0.129234528,pos,ns,0.888621438,-0.000292152,0.000242726,-1.203627975,0.229651707,neg,ns,0.055619225,Wnt5a,Wnt5a_fiveUTR,14,28505697,28505746,28505745,28505746,50,+,TCTTTTGCACAATCACGCCCACATTTGGGGTTGGAAAGCCCTAATTACCG,Promoter (<=1kb),14,28504750,28527448,22699,1,Wnt5a-201,947,Wnt5a-201;Wnt5a-204;Wnt5a-206,Wnt5a;Wnt5a;Wnt5a,0;-154;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,8,22418,ENSMUSG00000021994,conserved gene and region,14,28505712,28506138,427,*,427,53,0.683840749,1.093760572,0.12412178,5.59E-46,CpGisland,TRUE,U3,Pr-B
337,cg17182285,0.0000707,0.0000135,5.220961178,0.000000327,gain,yes,-0.0000163,0.000023,-0.709374976,0.478624994,neg,ns,0.008673653,0.006739089,1.28706614,0.199031414,pos,ns,0.701078371,0.0000882,0.000231757,0.380359898,0.703938763,pos,ns,0.361200486,Zfhx4,Zfhx4_Promoter,3,5212212,5212261,5212260,5212261,50,+,CTATCATCATTGTCATTATCCCTTTCCATGTGGAAATAATTTTATTATCG,Promoter (6-7kb),3,5218526,5413165,194640,1,Zfhx4-203,-6265,NA,NA,NA,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,10,77,80892,ENSMUSG00000025255,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15807,cg21617338,0.00000701,0.00000154,4.563091428,0.00000727,gain,ns,-0.00000185,0.00000261,-0.70925147,0.478701511,neg,ns,0.0019925,0.000764959,2.604714689,0.009638231,pos,ns,2.01600266,-0.0000428,0.0000263,-1.628745694,0.104382633,neg,ns,0.026854196,Mef2c,Mef2c_Intron,13,83524002,83524051,83524002,83524003,50,+,CGTATGGCATGTGCTATTACCCCACCGTAAAACTAAAATTAGCAAAATGT,"Intron (Mef2c-218/Mef2c, intron 2 of 10)",13,83504034,83663343,159310,1,Mef2c-218,19968,Mef2c-218;Mef2c-228;Mef2c-221;Mef2c-229;Mef2c-201;Mef2c-202;Mef2c-207;Mef2c-231;Mef2c-222;Mef2c-223;Mef2c-209;Mef2c-227;Mef2c-217;Mef2c-213;Mef2c-214;Mef2c-215;Mef2c-226,Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,41,17260,ENSMUSG00000005583,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20494,cg00844490,-0.000051,0.0000106,-4.806045252,0.0000024,loss,ns,0.0000128,0.000018,0.709136816,0.478772551,pos,ns,-0.011219173,0.005284394,-2.123076707,0.034539515,neg,ns,1.461683761,0.000159236,0.00018173,0.876222356,0.381587621,pos,ns,0.786214201,Smug1,Smug1_Exon,15,103125998,103126047,103126046,103126047,50,+,CCCACAGCCCATTAACCTACTTTTGCAACTTCATTAAAACAGAGTCTTCG,"Exon (D930007P13Rik-201/D930007P13Rik-201, exon 5 of 7)",15,103153307,103158002,4696,2,Smug1-201,31955,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,12,71726,ENSMUSG00000036061,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1326,cg07479336,0.0000246,0.00000358,6.866527835,3.60E-11,gain,yes,-0.00000431,0.00000608,-0.709002229,0.478855948,neg,ns,0.003345755,0.001780515,1.879094306,0.061169656,pos,ns,1.213463965,-0.0000586,0.0000612,-0.956419265,0.339605708,neg,ns,0.032396654,Fezf2,Fezf2_fiveUTR,14,12346707,12346756,12346707,12346708,50,+,CGAACCAATTTTCCGAAGTGATTCATAGAGCTGAATTCTGCCAAGGCAGC,5' UTR,14,12343388,12348189,4802,2,Fezf2-202,1433,Fezf2-203;Fezf2-201;Fezf2-202,Fezf2;Fezf2;Fezf2,0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,13,45,54713,ENSMUSG00000021743,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13593,cg16724939,-0.0000015,0.00000112,-1.337367511,0.182083117,loss,ns,0.00000135,0.00000191,0.708927597,0.478902197,pos,ns,0.001931659,0.000559474,3.452635158,0.000632295,pos,ns,3.199080128,-0.0000592,0.0000192,-3.076686668,0.002279857,neg,ns,0.9649522,Rnf103,Rnf103_threeUTR,6,71508969,71509018,71508969,71508970,50,-,CGCAAGATTGAAGTAGAGCACATTTTTAAATGGATAACTGCTCATGCAGC,3' UTR,6,71493894,71510881,16988,1,Rnf103-201,15075,Rnf103-201;Rnf103-202;Rnf103-203;Rnf103-204,Rnf103;Rnf103;Rnf103;Rnf103,0;0;0;5083,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,3,22644,ENSMUSG00000052656,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25317,cg27413133,-0.00000393,0.00000143,-2.748437094,0.006338937,loss,ns,0.00000172,0.00000243,0.708912757,0.478911394,pos,ns,-0.001172084,0.000711362,-1.647661754,0.100435269,neg,ns,0.998113752,0.000000434,0.0000245,0.01773831,0.98585903,pos,ns,0.030521581,Dusp16,Dusp16_Promoter,6,134792694,134792743,134792694,134792695,50,-,CGTCACTTGAAACCAATCCCAGTGAATGAACTCAGCGGAGCCCCGGGGAA,Promoter (<=1kb),6,134715473,134792625,77153,2,Dusp16-201,-118,Dusp16-202;Dusp16-201;Dusp16-204,Dusp16;Dusp16;Dusp16,0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,4,70686,ENSMUSG00000030203,conserved gene but different region,6,134792636,134792997,362,*,362,48,0.732044199,1.003465004,0.132596685,2.85E-43,CpGisland,TRUE,NA,NRS
19613,cg07673667,-0.0000418,0.0000096,-4.353733827,0.0000182,loss,ns,0.0000116,0.0000163,0.70853842,0.47914341,pos,ns,-0.006435195,0.004777949,-1.346853045,0.17901135,neg,ns,0.747119431,-0.000124401,0.000164313,-0.75709882,0.449565708,neg,ns,0.807080647,Gm8641,Gm8641_Intergenic_upstream,9,100131115,100131164,100131163,100131164,50,+,TCAGATAACTTTTTTCTTGCAGTGAGATGAAGTGGCTGTCATTATCTCCG,Distal Intergenic,9,99946564,99947389,826,2,Gm8641-201,-183726,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,15,667456,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8732,cg27612479,-0.000000356,0.00000275,-0.129051971,0.897400213,loss,ns,0.00000332,0.00000468,0.708410834,0.479222503,pos,ns,0.001694802,0.001371088,1.236100031,0.217357165,pos,ns,0.66282604,-0.0000745,0.0000472,-1.58070571,0.11496508,neg,ns,0.952314773,Gm12163,Gm12163_Intergenic_upstream,11,45644030,45644079,45644030,45644031,50,-,CGGTAATTTTTGTCATTAAAGCTGTTAATCTGCTCAGCGCTCCTCATAAG,Distal Intergenic,11,45813604,45813992,389,1,Gm12163-201,-169574,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,3,100504338,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8204,cg13594880,-0.0000133,0.00000308,-4.321466724,0.0000209,loss,ns,-0.00000371,0.00000523,-0.7083647,0.479251104,neg,ns,0.000553512,0.001533411,0.360967556,0.718369562,pos,ns,0.143652077,-0.000130475,0.0000527,-2.474206739,0.013888308,neg,ns,0.948197311,Kmt2a,Kmt2a_Exon,9,44848626,44848675,44848626,44848627,50,+,CGAATAAGACCTTCTTTGGCATACTTTGCTGAGGAAAAGTATTGTGGCTC,"Exon (Kmt2a-201/Kmt2a, exon 3 of 36)",9,44803355,44881296,77942,2,Kmt2a-201,32621,Kmt2a-201;Kmt2a-202;Kmt2a-205;Kmt2a-203;Kmt2a-206,Kmt2a;Kmt2a;Kmt2a;Kmt2a;Kmt2a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,10,214162,ENSMUSG00000002028,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9428,cg00273076,0.0000436,0.00000766,5.696662972,2.84E-08,gain,yes,-0.00000922,0.000013,-0.708157096,0.47937982,neg,ns,0.008350992,0.003812969,2.190154898,0.029257733,pos,ns,1.533759325,-0.000189651,0.000131128,-1.446309762,0.149100631,neg,ns,0.250123895,Rpl17-ps6,Rpl17-ps6_Intergenic_downstream,13,48729897,48729946,48729897,48729898,50,-,CGTCTGGGGAAATGGAAATTATAGGATTGGAGAGTGTCCTTGGGTAAAGA,Distal Intergenic,13,48763050,48763581,532,2,Rpl17-ps6-201,33684,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,4,100416501,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
21031,cg23078557,-0.00000443,0.00000333,-1.331617445,0.183964229,loss,ns,0.00000401,0.00000566,0.708110564,0.479408673,pos,ns,0.003463552,0.001657374,2.089783367,0.037452019,pos,ns,1.426524763,-0.000147463,0.000057,-2.587201493,0.010130997,neg,ns,0.938487262,Vrk1,Vrk1_Intergenic_downstream,12,106129450,106129499,106129498,106129499,50,+,TAATTCTGCTTTTTAATTTCTTGCATACATTTGCATATTAATTTTGCCCG,Distal Intergenic,12,106030717,106075409,44693,1,Vrk1-204,98733,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,29,37,22367,ENSMUSG00000021115,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9280,cg03696706,-0.00000439,0.00000138,-3.184636272,0.001596742,loss,ns,0.00000166,0.00000234,0.70800152,0.479476291,pos,ns,0.00139024,0.000686688,2.024556839,0.043769948,pos,ns,1.358823974,-0.0000396,0.0000236,-1.676760274,0.094597422,neg,ns,0.053459071,Zfp282,Zfp282_fiveUTR,6,47877648,47877697,47877648,47877649,50,-,CGAGCGGGGAACAGCACTCCCAGGATGCAGTTTGTGTCAACACGGCCGCA,Promoter (<=1kb),6,47877656,47892813,15158,1,Zfp282-202,0,Zfp282-201;Zfp282-202;Zfp398-202,Zfp282;Zfp282;Zfp398,0;0;41953,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,5,101095,ENSMUSG00000025821,conserved gene and region,6,47877367,47877695,329,*,329,28,0.686930091,0.726040353,0.085106383,1.35E-19,CpGisland,TRUE,U1,Pr-A
12691,cg06597890,-0.0000646,0.0000174,-3.706114361,0.000249206,loss,ns,0.0000209,0.0000296,0.707835302,0.479579373,pos,ns,0.042217713,0.008670154,4.869315162,0.00000179,pos,ns,5.747696734,-0.002053107,0.000298166,-6.885786334,3.20E-11,neg,yes,0.275542698,Gm17952,Gm17952_Intergenic_upstream,3,66683941,66683990,66683941,66683942,50,+,CGTTGTAATTGGATCTTAATTACACAATGTTCTGAGAGGTTATTTTTATT,Distal Intergenic,3,66562805,66563551,747,2,Gm17952-201,-120390,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,5,100416166,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24864,cg15290841,-0.000000529,0.00000156,-0.338660212,0.735094984,loss,ns,0.00000188,0.00000265,0.707643169,0.479698542,pos,ns,0.000137453,0.000777758,0.176729301,0.859836429,pos,ns,0.065584159,0.0000369,0.0000267,1.378470917,0.169051916,pos,ns,0.049719439,Zc3h6,Zc3h6_Exon,2,128967819,128967868,128967867,128967868,50,+,ACATGCAGGGCACGACAGGTCGGGAACCCTTCTTGTCTGTCTTTCTGTCG,Promoter (<=1kb),2,128967402,129018563,51162,1,Zc3h6-202,417,Zc3h6-202;Zc3h6-201,Zc3h6;Zc3h6,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,8,78751,ENSMUSG00000042851,conserved gene but different region,2,128967831,128968196,366,*,366,57,0.773224044,1.042266187,0.155737705,4.44E-56,CpGisland,TRUE,U1,Pr-A
32,cg16109955,0.00000444,0.00000479,0.926394188,0.354961805,gain,ns,0.00000576,0.00000814,0.707514082,0.479778615,pos,ns,0.003979513,0.002384593,1.668843285,0.09615802,pos,ns,1.017014489,-0.0000815,0.000082,-0.993450218,0.321265398,neg,ns,0.061340438,Hnf4g,Hnf4g_Promoter,3,3507975,3508024,3508023,3508024,50,-,TGGTTACTGTTTAACGTCCCCACCCACGTTTCAGTTTGTTTAGTAAATCG,Promoter (<=1kb),3,3508030,3657844,149815,1,Hnf4g-201,-55,Hnf4g-201,Hnf4g,-6,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,1,30942,ENSMUSG00000017688,conserved gene and region,3,3507914,3508088,175,*,175,11,0.508571429,0.982142857,0.062857143,0.00000129,CpGisland,TRUE,U2,Pr-W
21709,cg15524243,-0.00000241,0.00000126,-1.917431232,0.056101965,loss,ns,-0.00000151,0.00000214,-0.707458782,0.479812921,neg,ns,-0.000441387,0.000626195,-0.704871345,0.481419539,neg,ns,0.317476287,0.000005,0.0000215,0.232298347,0.816459577,pos,ns,0.039941435,Prpf38b,Prpf38b_Exon,3,108910439,108910488,108910439,108910440,50,+,CGCCAGGTGAGCTCCCCAGCACAGCCAAGCCAGCACCGACCCTGCCGCAG,"Exon (Prpf38b-207/Prpf38b, exon 1 of 2)",3,108902805,108911696,8892,2,Prpf38b-204,1208,Prpf38b-204;Prpf38b-201;Prpf38b-208;Prpf38b-202;Prpf38b-203;Prpf38b-206;Prpf38b-205;Prpf38b-207,Prpf38b;Prpf38b;Prpf38b;Prpf38b;Prpf38b;Prpf38b;Prpf38b;Prpf38b,0;0;0;-4854;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,13,66921,ENSMUSG00000027881,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
18649,cg01611780,0.0000754,0.0000105,7.204079922,4.46E-12,gain,yes,0.0000126,0.0000178,0.707336402,0.479888844,pos,ns,0.017249734,0.005206943,3.312833076,0.001032852,pos,ns,2.985961973,-0.000576703,0.000179066,-3.220610443,0.001414967,neg,ns,0.067561138,Skap1,Skap1_Intron,11,96579116,96579165,96579164,96579165,50,+,TATGCAAATGTGAACGGAGTTTCACCCGATCCCGGGGTCTGACCTGACCG,"Intron (Skap1-204/Skap1, intron 4 of 12)",11,96464593,96758941,294349,1,Skap1-204,114523,Skap1-204;Skap1-203;Skap1-209;Skap1-201;Skap1-205;Skap1-206;Skap1-208,Skap1;Skap1;Skap1;Skap1;Skap1;Skap1;Skap1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,40,46,78473,ENSMUSG00000057058,conserved gene and region,11,96578991,96579282,292,*,292,18,0.547945206,0.829545455,0.061643836,2.30E-10,CpGisland,TRUE,U9,En-Pp
7810,cg16731519,0.00000247,0.00000368,0.672344327,0.501865325,gain,ns,0.00000442,0.00000624,0.707336333,0.479888887,pos,ns,0.001645335,0.001829344,0.899412535,0.369131066,pos,ns,0.432819403,-0.0000618,0.0000629,-0.982927976,0.32640939,neg,ns,0.9175201,Arhgap15,Arhgap15_threeUTR,2,44395753,44395802,44395801,44395802,50,-,TGGCAGTCCTACTCTGAAATGAAGTGCCGTAAAATTAAAGATGACAGACG,3' UTR,2,43748824,44395953,647130,1,Arhgap15-203,646929,Arhgap15-203,Arhgap15,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,78,76117,ENSMUSG00000049744,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18229,cg04363039,-0.000000866,0.000000685,-1.264663004,0.206942081,loss,ns,0.000000823,0.00000116,0.707230063,0.479954821,pos,ns,0.000513828,0.000340791,1.507749672,0.132637007,pos,ns,0.877335288,0.000000204,0.0000117,0.017447601,0.986090759,pos,ns,0.979132525,Ap3b1,Ap3b1_Intron,13,94546057,94546106,94546057,94546058,50,-,CGATAATGAATCTTCTGTTCTGAAAAGCATGGTTTAGTTGATTTTTTTAA,"Intron (Ap3b1-201/Ap3b1, intron 25 of 26)",13,94358960,94566317,207358,1,Ap3b1-201,187097,Ap3b1-201;Ap3b1-205;Ap3b1-204;Ap3b1-203;Ap3b1-202,Ap3b1;Ap3b1;Ap3b1;Ap3b1;Ap3b1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,55,11774,ENSMUSG00000021686,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20873,cg03527353,0.00000767,0.00000344,2.23029421,0.026443484,gain,ns,-0.00000413,0.00000585,-0.707170297,0.479991904,neg,ns,-0.000161395,0.001712399,-0.094250977,0.92497068,neg,ns,0.033872033,-0.0000216,0.0000589,-0.366789392,0.714026353,neg,ns,0.076306135,Pax6,Pax6_fiveUTR,2,105675549,105675598,105675597,105675598,50,-,GAGGTCAGGCTTCGCTAATGGGCCAGTGAGGAGCGGTGGAGGCGAGGCCG,5' UTR,2,105668900,105697364,28465,1,Pax6-206,6649,Pax6-206;Pax6-207;Pax6-210;Pax6-214;Pax6-208;Pax6-217;Pax6-226;Pax6-220;Pax6-202;Pax6-205;Pax6-225;Pax6-204;Pax6-201;Pax6-203;Pax6-224;Pax6-219,Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,15,78,18508,ENSMUSG00000027168,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
17456,cg07228206,0.00000351,0.00000466,0.753342385,0.451815946,gain,ns,0.0000056,0.00000792,0.707162585,0.479996689,pos,ns,-0.0000417,0.002321478,-0.017975502,0.985669961,neg,ns,0.006268479,-0.0000535,0.0000798,-0.670138311,0.50326851,neg,ns,0.840282233,Nrxn3,Nrxn3_threeUTR,12,90331765,90331814,90331813,90331814,50,-,CACCACCTTCTCCTTGGTAACAGATAAGAGTCTTTCCACTTCAATCTTCG,3' UTR,12,88722986,90332878,1609893,1,Nrxn3-213,1608779,Nrxn3-213;Nrxn3-208;Nrxn3-205;Nrxn3-201;Nrxn3-210;Nrxn3-214;Nrxn3-203;Nrxn3-202,Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,14,39,18191,ENSMUSG00000066392,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20436,cg02999430,0.0000167,0.00000239,6.974414671,1.86E-11,gain,yes,0.00000287,0.00000406,0.707149064,0.480005079,pos,ns,0.001992605,0.001190263,1.674088438,0.095121799,pos,ns,1.021719947,-0.0000127,0.0000409,-0.31032116,0.756525266,neg,ns,0.057985881,Hoxc4,Hoxc4_threeUTR,15,103035690,103035739,103035690,103035691,50,-,CGGCAGCAAGTCCTGGAATTAGAGAAAGAGTTTCATTACAACCGCTACCT,3' UTR,15,103018934,103036405,17472,1,Hoxc4-202,16756,Hoxc4-202;Hoxc4-201,Hoxc4;Hoxc4,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,17,91,15423,ENSMUSG00000075394,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
25129,cg20358438,0.0000844,0.0000142,5.952060318,7.16E-09,gain,yes,-0.000017,0.0000241,-0.707112433,0.480027809,neg,ns,0.020592855,0.007061163,2.916354778,0.003799883,pos,ns,2.420229732,-0.000443611,0.000242833,-1.82681772,0.068688647,neg,ns,0.480904533,Ahdc1,Ahdc1_Intron,4,133043068,133043117,133043116,133043117,50,-,AACGGCAACAGTCCCCCCAGAACAGGCGGAGTGTGTGTCTGCCATTAGCG,"Intron (Ahdc1-210/Ahdc1, intron 2 of 3)",4,133011260,133060820,49561,1,Ahdc1-210,31808,Ahdc1-210;Ahdc1-203;Ahdc1-204;Ahdc1-205;Ahdc1-207;Ahdc1-211;Ahdc1-209;Ahdc1-206;Ahdc1-201;Ahdc1-202,Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,35,49,230793,ENSMUSG00000037692,conserved gene and region,4,133043047,133043197,151,*,151,12,0.635761589,0.795085564,0.079470199,2.68E-08,CpGisland,TRUE,U8,En-Pd
10968,cg20173540,0.00000133,0.000000915,1.454227721,0.146894877,gain,ns,-0.0000011,0.00000155,-0.706710032,0.48027754,neg,ns,0.000271369,0.000455174,0.596187296,0.551485183,pos,ns,0.258466152,-0.000017,0.0000157,-1.08624722,0.278213555,neg,ns,0.972183771,Tcf7l2,Tcf7l2_threeUTR,19,55926680,55926729,55926728,55926729,50,-,ACAGATGCAAATACTCCAAAGAAGTGTCGGGCACTGTTCGGGCTTGACCG,3' UTR,19,55741820,55933229,191410,1,Tcf7l2-213,184860,Tcf7l2-213;Tcf7l2-201;Tcf7l2-208;Tcf7l2-211;Tcf7l2-212;Tcf7l2-222;Tcf7l2-215;Tcf7l2-207;Tcf7l2-202;Tcf7l2-209;Tcf7l2-210;Tcf7l2-203,Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,7,88,21416,ENSMUSG00000024985,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19072,cg15912314,-0.0000621,0.0000193,-3.213452777,0.00144953,loss,ns,0.0000232,0.0000328,0.706624289,0.480330762,pos,ns,-0.016707887,0.009615761,-1.737552336,0.083282849,neg,ns,1.079444425,0.000319956,0.000330685,0.967555709,0.334020544,pos,ns,0.503056825,Neurod2,Neurod2_Intergenic_downstream,11,98320460,98320509,98320508,98320509,50,+,CTCACTGTATAATAATGAACAGATGCCATGGAATTTAAGCTGGAGCCTCG,Distal Intergenic,11,98325415,98329648,4234,2,Neurod2-201,9139,Neurod2-201,Neurod2,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,22,18013,ENSMUSG00000038255,conserved gene and region,11,98320508,98320625,118,*,118,9,0.737288136,0.561310782,0.076271186,0.00000366,CpGisland,TRUE,U13,Hc-P
281,cg25599220,-0.0000541,0.00000879,-6.148371172,2.41E-09,loss,yes,0.0000106,0.0000149,0.706612864,0.480337854,pos,ns,-0.010905598,0.004376459,-2.49187723,0.013229272,neg,ns,1.878464066,0.0000551,0.000150506,0.366110338,0.714532465,pos,ns,0.202694159,Npas4,Npas4_Promoter,19,4993117,4993166,4993117,4993118,50,+,CGCTGCTAAAAATACTGGCAGTGTGAGTCATCCTGGCCTGGCTGAGTCAC,Promoter (2-3kb),19,4984355,4990316,5962,2,Npas4-201,-2801,Npas4-202;Npas4-201;Npas4-203,Npas4;Npas4;Npas4,0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,16,225872,ENSMUSG00000045903,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
6411,cg27340838,-0.0000108,0.00000637,-1.689181289,0.092190157,loss,ns,-0.00000765,0.0000108,-0.706602023,0.480344583,neg,ns,-0.005860695,0.003169799,-1.848916808,0.065421802,neg,ns,1.184277495,0.0000707,0.000109009,0.648364318,0.517229304,pos,ns,0.106194872,Pknox2,Pknox2_fiveUTR,9,37147194,37147243,37147194,37147195,50,-,CGCCGCCTGCAAAAGCGTCTCTGACATGGAAATGAATGACAGCTTACCTG,Promoter (<=1kb),9,36890982,37147407,256426,2,Pknox2-201,164,Pknox2-201;Pknox2-202;Pknox2-209;Pknox2-212;Pknox2-211;Pknox2-213;Pknox2-214,Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2,0;0;0;0;0;0;-1379,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,47,208076,ENSMUSG00000035934,conserved gene but different region,9,37147150,37147210,61,*,61,11,0.803278689,1.156896552,0.180327869,9.04E-12,CpGisland,TRUE,U3,Pr-B
18082,cg20927687,-0.00000727,0.00000304,-2.391635317,0.017369296,loss,ns,0.00000365,0.00000516,0.706577385,0.480359877,pos,ns,-0.002253963,0.001511934,-1.490781377,0.137035702,neg,ns,0.863166272,0.0000897,0.000052,1.724515909,0.085611547,pos,ns,0.962378404,Magi1,Magi1_Exon,6,93680782,93680831,93680830,93680831,50,+,TACAAACCGTAGTTTGATTATGGCCCATAAGGTAGAAGCAAGCCTCCCCG,"Exon (Magi1-201/Magi1, exon 21 of 22)",6,93675455,94283322,607868,2,Magi1-201,602491,Magi1-201;Magi1-202;Magi1-208;Magi1-203;Magi1-206;Magi1-209;Magi1-205,Magi1;Magi1;Magi1;Magi1;Magi1;Magi1;Magi1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,18,14924,ENSMUSG00000045095,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13728,cg20148440,-0.0000318,0.00000619,-5.140547506,0.000000486,loss,yes,0.00000743,0.0000105,0.706444444,0.480442404,pos,ns,-0.005200868,0.003079285,-1.688985883,0.092227641,neg,ns,1.035138898,0.0000594,0.000105896,0.560760525,0.575365868,pos,ns,0.89414691,Gabre,Gabre_Promoter,X,72282966,72283015,72282966,72282967,50,-,CGTTTATTTCAAGTGGTGGTAAAAGCAGATGACTCATCCTTCAGAGCTGC,Promoter (8-9kb),20,72255999,72274803,18805,2,Gabre-201,-8212,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,1,14404,ENSMUSG00000031340,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
102,cg27201505,0.0000276,0.00000911,3.029613142,0.002654745,gain,ns,-0.0000109,0.0000155,-0.706441125,0.480444464,neg,ns,0.012429218,0.00453318,2.74183195,0.006464674,pos,ns,2.189453352,-0.00045555,0.000155896,-2.922143338,0.00373185,neg,ns,0.141494665,Crebbp,Crebbp_Exon,16,4138742,4138791,4138790,4138791,50,+,TACCTTGGCAGGCTTTCCCAGCCTGACAATGCGTCATGTGATTCAAAACG,"Exon (Crebbp-201/Crebbp, exon 4 of 31)",16,4081328,4213997,132670,2,Crebbp-201,75206,Crebbp-201;Crebbp-205,Crebbp;Crebbp,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,7,12914,ENSMUSG00000022521,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4522,cg00195533,-0.0000136,0.00000919,-1.478591777,0.1402648,loss,ns,-0.000011,0.0000156,-0.706234958,0.480572464,neg,ns,-0.004730702,0.004575305,-1.033964196,0.301958828,neg,ns,0.520052269,-0.0000327,0.000157344,-0.20777788,0.835538837,neg,ns,0.651201068,Flnc,Flnc_Intron,6,29435072,29435121,29435072,29435073,50,-,CGTGACACAGCAGATGTCTCTGAGCTTTCCAGAAGGACAAGGCTGAGGGC,"Intron (Flnc-203/Flnc, intron 1 of 1)",6,29433256,29439056,5801,1,Flnc-203,1816,Flnc-203;Flnc-201;Flnc-202,Flnc;Flnc;Flnc,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,2,68794,ENSMUSG00000068699,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
5873,cg21823684,-0.0000213,0.00000466,-4.578054696,0.0000068,loss,ns,0.00000559,0.00000791,0.706198569,0.480595058,pos,ns,-0.007393903,0.002317582,-3.190351511,0.001566489,neg,ns,2.805072537,0.000106255,0.0000797,1.333164485,0.183456705,pos,ns,0.923632035,Gm7733,Gm7733_Intergenic_downstream,3,35105939,35105988,35105987,35105988,50,+,AAGGCCATAAATTTAGTTCAAGGCAAAGAATTTCCCTAAAAATAGTCCCG,Distal Intergenic,3,35536882,35537800,919,2,Gm7733-201,431812,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,14,15,665655,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4781,cg17218628,0.0000306,0.00000514,5.94052214,7.63E-09,gain,yes,0.00000617,0.00000874,0.706108968,0.480650694,pos,ns,0.001372536,0.002560354,0.536072835,0.592292646,pos,ns,0.22746366,0.0000966,0.0000881,1.096784117,0.273587026,pos,ns,0.067466993,Mecom,Mecom_Intron,3,30514125,30514174,30514173,30514174,50,-,AATCAAGTGATCAACAGGGATATTTATCATCGCTATATAGGACTACTTCG,"Intron (Mecom-208/Mecom, intron 2 of 8)",3,29977344,30548008,570665,2,Mecom-208,33834,Mecom-212;Mecom-213;Mecom-207;Mecom-208;Mecom-211;Mecom-209,Mecom;Mecom;Mecom;Mecom;Mecom;Mecom,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,80,14013,ENSMUSG00000027684,conserved gene but different region,3,30514155,30514288,134,*,134,12,0.582089552,1.148571429,0.089552239,6.76E-09,CpGisland,TRUE,NA,NRS
14065,cg00103439,-0.0000043,0.00000552,-0.779296252,0.436399727,loss,ns,-0.00000662,0.00000938,-0.70593163,0.480760821,neg,ns,-0.006357234,0.002747036,-2.314215744,0.02130935,neg,ns,1.671429798,0.000105409,0.0000945,1.115789296,0.265376503,pos,ns,0.874393317,Ccdc92b,Ccdc92b_Exon,11,74629990,74630039,74629990,74629991,50,+,CGTGTCCCTGGAGCATCAGATCCAGAGCGTGCAACGCCACATCAGCTTCC,"Exon (Ccdc92b-201/Ccdc92b, exon 2 of 4)",11,74619605,74641516,21912,1,Ccdc92b-201,10385,Ccdc92b-201,Ccdc92b,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,432582,ENSMUSG00000069814,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21203,cg04349571,-0.00000323,0.00000623,-0.518368275,0.604571129,loss,ns,0.00000747,0.0000106,0.705846672,0.480813584,pos,ns,0.000515231,0.003101914,0.166100858,0.868185857,pos,ns,0.061387293,0.000179494,0.000106675,1.682630498,0.093453503,pos,ns,0.869804934,Mpped2,Mpped2_Exon,2,106744744,106744793,106744744,106744745,50,+,CGCGGTTTGTCTGCATCTCAGACACACACTCCAGAACAGATGGTATCCAG,"Exon (Mpped2-202/Mpped2, exon 3 of 7)",2,106693269,106868356,175088,1,Mpped2-202,51475,Mpped2-202;Mpped2-206;Mpped2-201;Mpped2-203;Mpped2-204;Mpped2-205,Mpped2;Mpped2;Mpped2;Mpped2;Mpped2;Mpped2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,16,33,77015,ENSMUSG00000016386,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11862,cg26931400,0.0000572,0.0000142,4.021932573,0.0000726,gain,ns,-0.0000171,0.0000242,-0.705816122,0.480832558,neg,ns,0.020237725,0.00708311,2.857180781,0.004563227,pos,ns,2.340727945,-0.000380291,0.000243588,-1.561210605,0.119494325,neg,ns,0.363015408,Tle3,Tle3_Intergenic_upstream,9,61339470,61339519,61339518,61339519,50,+,TTTGAAGTGCAAACACCGAGCTGTGTATTTTGGGCCCCTCTGAAGGGCCG,Distal Intergenic,9,61372366,61418497,46132,1,Tle3-218,-32847,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,30,21887,ENSMUSG00000032280,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20051,cg16772140,0.000012,0.00000249,4.827235392,0.00000218,gain,ns,0.00000298,0.00000423,0.705689703,0.480911078,pos,ns,0.001857024,0.001238076,1.499927878,0.134650808,pos,ns,0.870791037,-0.0000465,0.0000426,-1.091215464,0.276025479,neg,ns,0.028790972,Ephb1,Ephb1_Promoter,9,102354800,102354849,102354800,102354801,50,-,CGAGCACCTCCTTACACTGGCATTGTTAGTTTAAGAAAAACTTTTGCTTG,Promoter (<=1kb),9,101922128,102354693,432566,2,Ephb1-201,-156,Ephb1-201;Ephb1-202;Ephb1-203,Ephb1;Ephb1;Ephb1,0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,7,270190,ENSMUSG00000032537,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
14561,cg23775742,0.000225339,0.0000377,5.972450776,6.40E-09,gain,yes,-0.0000452,0.0000641,-0.705659699,0.480929715,neg,ns,0.03850208,0.018778517,2.05032587,0.041173352,pos,ns,1.38538377,-0.003898557,0.000645792,-6.036865165,4.49E-09,neg,yes,0.448677828,Tsc22d1,Tsc22d1_Intron,14,76505811,76505860,76505811,76505812,50,+,CGCCTTGGCCGTTCTTTGTTATTGGAGCAGCGCCTGTGGCTCTTCTCACG,"Intron (Tsc22d1-204/Tsc22d1, intron 4 of 4)",14,76414961,76507762,92802,1,Tsc22d1-204,90850,Tsc22d1-204;Tsc22d1-202;Tsc22d1-207;Tsc22d1-208;Tsc22d1-203;Tsc22d1-214;Tsc22d1-201;Tsc22d1-206;Tsc22d1-205,Tsc22d1;Tsc22d1;Tsc22d1;Tsc22d1;Tsc22d1;Tsc22d1;Tsc22d1;Tsc22d1;Tsc22d1,0;0;0;0;0;0;0;1281;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,10,21807,ENSMUSG00000022010,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
14306,cg19613085,-0.0000109,0.00000753,-1.445620326,0.149293887,loss,ns,-0.00000902,0.0000128,-0.705391349,0.481096417,neg,ns,-0.000754795,0.003745352,-0.201528497,0.840417523,neg,ns,0.075504901,-0.000142567,0.000128802,-1.106864435,0.269210695,neg,ns,0.71030537,Smg6,Smg6_Intron,11,75140467,75140516,75140515,75140516,50,+,AGGTCACCCATAGGCCAACACAGTCATTTGGCCTGCAGCAGTCTCAAGCG,"Intron (Smg6-201/Smg6, intron 14 of 18)",11,74925823,75164448,238626,1,Smg6-201,214644,Smg6-201;Smg6-202;Smg6-204;Smg6-205,Smg6;Smg6;Smg6;Smg6,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,34,103677,ENSMUSG00000038290,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U5,En-Sd
1966,cg23575907,-0.0000155,0.00000537,-2.875923801,0.004307542,loss,ns,-0.00000644,0.00000913,-0.70533103,0.481133893,neg,ns,0.000185446,0.002675081,0.0693234,0.944776896,pos,ns,0.024670736,-0.0000707,0.000092,-0.768950673,0.442508034,neg,ns,0.948675324,Rarb,Rarb_Intron,14,16704831,16704880,16704879,16704880,50,+,GCTTATTAAAGACCTCTCAGCTGAAGGGGCAGAATATTATGAACTGGCCG,"Intron (Rarb-203/Rarb, intron 1 of 3)",14,16509065,16819156,310092,2,Rarb-203,114276,Rarb-203;Rarb-204,Rarb;Rarb,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,16,218772,ENSMUSG00000017491,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7224,cg27534091,-0.0000441,0.0000115,-3.832520822,0.000153578,loss,ns,0.0000138,0.0000195,0.705229679,0.481196864,pos,ns,-0.005991669,0.005721522,-1.047215854,0.295815838,neg,ns,0.528978578,-0.000157869,0.000196763,-0.802333912,0.422974476,neg,ns,0.435416402,Gria3,Gria3_threeUTR,X,41669494,41669543,41669494,41669495,50,-,CGTGAAGAACGCCTGTAAACCTTGCAGTATTGAAACTCAGTGAACAAGGC,3' UTR,20,41401128,41676585,275458,1,Gria3-202,268366,Gria3-202;Gria3-201;Gria3-208;Gria3-206;Gria3-209,Gria3;Gria3;Gria3;Gria3;Gria3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,26,53623,ENSMUSG00000001986,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23988,cg18125568,-0.00000461,0.00000153,-3.017821044,0.002757134,loss,ns,0.00000183,0.0000026,0.705212877,0.481207304,pos,ns,0.000923363,0.000760427,1.214269336,0.225569083,pos,ns,0.646720425,-0.0000431,0.0000262,-1.649142472,0.100131391,neg,ns,0.057417095,BC048403,BC048403_fiveUTR,10,121740161,121740210,121740161,121740162,50,+,CGCGGCCGAGAAGGTCTATCACAGCCTCACCTACCTGGGGCAGAAACTAG,Promoter (<=1kb),10,121739937,121752865,12929,1,BC048403-201,224,BC048403-201;BC048403-202,BC048403;BC048403,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,5,270802,ENSMUSG00000053684,conserved gene but different region,10,121739820,121740164,345,*,345,42,0.713043478,0.957826547,0.12173913,3.95E-36,CpGisland,TRUE,U1,Pr-A
19795,cg11950309,0.00000181,0.0000068,0.266173548,0.7902825,gain,ns,-0.00000814,0.0000115,-0.705054419,0.481305767,neg,ns,-0.003193259,0.003382985,-0.943917385,0.345946938,neg,ns,0.460990509,0.0000308,0.000116341,0.264941348,0.791230722,pos,ns,0.865773785,Msl2,Msl2_Exon,9,101102089,101102138,101102089,101102090,50,-,CGACGTTTTTAGCTGCCAGTACACATGATGATAAAAGTTTGGATGAAGCT,"Exon (Msl2-201/Msl2, exon 2 of 2)",9,101074762,101104800,30039,1,Msl2-201,27327,Msl2-202;Msl2-201;Ppp2r3a-202;Ppp2r3a-201,Msl2;Msl2;Ppp2r3a;Ppp2r3a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,19,77853,ENSMUSG00000066415,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8186,cg02501718,-0.00000222,0.00000248,-0.896947345,0.370443038,loss,ns,0.00000297,0.00000421,0.704794646,0.481467209,pos,ns,0.001258581,0.001232559,1.021112555,0.307997315,pos,ns,0.511453069,0.0000102,0.0000424,0.240981361,0.809728865,pos,ns,0.09196012,Pax2,Pax2_Exon,19,44835932,44835981,44835980,44835981,50,+,CTCCTGTGTTAACTTCCAGGTTCCCCTTATTATTATAGTGCCGCCCCCCG,"Exon (Pax2-203/Pax2, exon 10 of 10)",19,44756045,44837851,81807,1,Pax2-203,79887,Pax2-203;Pax2-201,Pax2;Pax2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,16,166,18504,ENSMUSG00000004231,conserved gene but different region,19,44835973,44836413,441,*,441,44,0.725623583,0.798387097,0.099773243,1.19E-33,CpGisland,TRUE,NA,NRS
24346,cg21278764,-0.000101451,0.0000104,-9.735783628,1.02E-19,loss,yes,-0.0000125,0.0000177,-0.704769272,0.48148298,neg,ns,-0.009109532,0.005186344,-1.756445883,0.079999663,neg,ns,1.096911843,-0.0000974,0.000178358,-0.546226979,0.585302814,neg,ns,0.819500353,Utp11,Utp11_Intron,4,124686382,124686431,124686382,124686383,50,+,CGGCACTAAGCAAGCAGTTGCCAGTTGTACTAAAATTACTACCAACTTAA,"Intron (Utp11-201/Utp11, intron 1 of 7)",4,124678160,124693600,15441,2,Utp11-201,7169,Utp11-201;Utp11-202,Utp11;Utp11,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,67205,ENSMUSG00000028907,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10252,cg15416032,-0.0000078,0.000005,-1.559839794,0.119818014,loss,ns,0.00000599,0.00000849,0.704741191,0.481500434,pos,ns,-0.003462069,0.002488321,-1.391327512,0.165123788,neg,ns,0.782190357,0.0000584,0.0000856,0.682513712,0.495423856,pos,ns,0.06850964,Tox4,Tox4_Exon,14,52279801,52279850,52279849,52279850,50,-,GACTTTCTTTTGGTTTCCAGTTTCCCGGAGGAAATGACAATTACCTGACG,Promoter (<=1kb),14,52279146,52296401,17256,1,Tox4-201,655,Rab2b-201;Rab2b-203;Rab2b-202;Rab2b-206;Rab2b-204;Rab2b-207;Rab2b-205;Tox4-201;Tox4-203;Tox4-204;Tox4-202,Rab2b;Rab2b;Rab2b;Rab2b;Rab2b;Rab2b;Rab2b;Tox4;Tox4;Tox4;Tox4,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,268741,ENSMUSG00000016831,conserved gene and region,14,52279478,52280006,529,*,529,44,0.648393195,0.84315004,0.083175803,5.11E-30,CpGisland,TRUE,U1,Pr-A
23877,cg06885782,0.0000966,0.0000101,9.532210316,4.68E-19,gain,yes,-0.0000121,0.0000172,-0.704726534,0.481509544,neg,ns,0.018572449,0.005041274,3.68407881,0.000270785,pos,ns,3.567376127,-0.000519872,0.000173369,-2.998646049,0.002931394,neg,ns,0.348797946,Kcnq4,Kcnq4_Promoter,4,120748750,120748799,120748798,120748799,50,-,GCGAGCTCGATTCTCAGCTGTCAGCAAAGGCAGCATTGATCTGCTGAGCG,Promoter (<=1kb),4,120715251,120748612,33362,2,Kcnq4-202,-187,Kcnq4-201;Kcnq4-202,Kcnq4;Kcnq4,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,5,60613,ENSMUSG00000028631,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
16452,cg07195437,-0.000000462,0.000000572,-0.807907543,0.419763314,loss,ns,0.000000685,0.000000972,0.704678515,0.481539392,pos,ns,-0.0000215,0.000284847,-0.075457234,0.939899594,neg,ns,0.026918538,-0.00000638,0.0000098,-0.651363517,0.515294417,neg,ns,0.984065277,Ylpm1,Ylpm1_Exon,12,85028820,85028869,85028820,85028821,50,-,CGAGACCCAAAGGGCCTCGTTTTGAAGGAAATCGCCCCGATGGGCCAAGA,"Exon (Ylpm1-201/Ylpm1, exon 5 of 21)",12,84996321,85070492,74172,1,Ylpm1-207,32499,Ylpm1-207;Ylpm1-201;Ylpm1-202;Ylpm1-203,Ylpm1;Ylpm1;Ylpm1;Ylpm1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,13,56531,ENSMUSG00000021244,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22600,cg17139066,-0.000058,0.00000627,-9.256291671,3.60E-18,loss,yes,-0.0000075,0.0000107,-0.704583791,0.481598272,neg,ns,-0.008962927,0.003120365,-2.872397128,0.004354631,neg,ns,2.361048678,0.0000618,0.000107309,0.576091417,0.564971391,pos,ns,0.91173661,Rpl19-ps10,Rpl19-ps10_Intergenic_downstream,7,115379932,115379981,115379932,115379933,50,+,CGATACAAGGACATTAAAGAGCATTAAACTACTTGATGACATTTTGGTCA,Distal Intergenic,7,115172056,115172385,330,1,Rpl19-ps10-201,207876,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,29,668472,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7264,cg26353501,0.00000387,0.0000044,0.878821329,0.380178828,gain,ns,0.00000527,0.00000747,0.704553938,0.48161683,pos,ns,0.006647193,0.002189421,3.036050251,0.002600337,pos,ns,2.584970358,-0.000202708,0.0000753,-2.692214602,0.007483614,neg,ns,0.894405454,Oxr1,Oxr1_Exon,15,41848654,41848703,41848702,41848703,50,+,CTGTCTCCATATTTAGGTAGTGTCAGTGGCTGAGTATCACCGCAGGATCG,"Exon (Oxr1-204/Oxr1, exon 12 of 17)",15,41447482,41861045,413564,1,Oxr1-203,401172,Oxr1-203;Oxr1-204;Oxr1-207;Oxr1-214;Oxr1-206;Oxr1-201;Oxr1-202;Oxr1-205;Oxr1-212;Oxr1-213;Oxr1-216;Oxr1-211,Oxr1;Oxr1;Oxr1;Oxr1;Oxr1;Oxr1;Oxr1;Oxr1;Oxr1;Oxr1;Oxr1;Oxr1,0;0;0;0;0;0;0;0;0;0;0;-1521,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,170719,ENSMUSG00000022307,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13997,cg11735410,0.0000157,0.00000332,4.722182596,0.00000354,gain,ns,-0.00000397,0.00000564,-0.704543296,0.481623445,neg,ns,0.001920529,0.001651337,1.163014809,0.245717956,pos,ns,0.609563105,0.0000255,0.0000568,0.449268935,0.653551596,pos,ns,0.069131546,Gm13668,Gm13668_Intergenic_upstream,2,74129282,74129331,74129330,74129331,50,+,AGATTGAAGGTTCGGAGATAGGCTATCATGACAGATGGAAACTGGCACCG,Distal Intergenic,2,73959669,73960669,1001,2,Gm13668-201,-168613,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,18,20,667729,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10744,cg24014238,-0.000000814,0.000000584,-1.395089966,0.16398739,loss,ns,0.000000699,0.000000992,0.704512056,0.481642865,pos,ns,0.000819325,0.00029048,2.820595848,0.00510248,pos,ns,2.292218657,-0.0000224,0.00000999,-2.24475941,0.025488531,neg,ns,0.0137703,Zfhx2,Zfhx2_fiveUTR,14,55091987,55092036,55092035,55092036,50,-,ATCGGAAATCGATGCACTTACACCTCAGCTGGAAGCAGGGACGGGAGTCG,Promoter (<=1kb),14,55060262,55092324,32063,2,Zfhx2-201,288,Thtpa-201;Zfhx2-201;Zfhx2-204,Thtpa;Zfhx2;Zfhx2,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,8,239102,ENSMUSG00000040721,mapped to different genes,14,55091989,55092102,114,*,114,12,0.675438597,0.970212766,0.105263158,9.79E-10,CpGisland,TRUE,U1,Pr-A
1564,cg23525713,-0.00000215,0.00000188,-1.141208395,0.254664014,loss,ns,0.00000226,0.0000032,0.704391331,0.481717918,pos,ns,0.001240682,0.000938175,1.322441549,0.18699598,pos,ns,0.728167729,-0.0000749,0.0000323,-2.32277971,0.020838067,neg,ns,0.949250476,Zfp521,Zfp521_Intron,18,13739147,13739196,13739147,13739148,50,-,CGCCCAGCGCCAATGAAATAACACACATCTGCATATCCACTGGGTCCCAT,"Intron (Zfp521-201/Zfp521, intron 5 of 7)",18,13687013,13972787,285775,2,Zfp521-201,233591,Zfp521-201;Zfp521-205;Zfp521-204,Zfp521;Zfp521;Zfp521,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,81,225207,ENSMUSG00000024420,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5449,cg03810626,0.0000412,0.0000111,3.700230102,0.000254804,gain,ns,0.0000133,0.0000189,0.704379532,0.481725254,pos,ns,0.026791985,0.005544603,4.832083647,0.00000213,pos,ns,5.671934373,-0.000884152,0.000190678,-4.63687417,0.00000522,neg,ns,0.33838484,Mvb12b,Mvb12b_Intergenic_upstream,2,33966805,33966854,33966805,33966806,50,-,CGTGAGGATTTAAGGAAGATAGATGGTACAAGATGTTGTCTCCTCCGCAG,Distal Intergenic,2,33729953,33887946,157994,2,Mvb12b-201,-78908,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,16,47,72543,ENSMUSG00000038740,mapped to different genes,2,33966422,33966984,563,*,563,36,0.555950266,0.830587657,0.063943162,1.24E-20,CpGisland,TRUE,NA,NRS
20665,cg21878650.1,-0.000260131,0.0000345,-7.533027247,5.47E-13,loss,yes,-0.0000413,0.0000587,-0.704309665,0.481768692,neg,ns,0.087541866,0.01718698,5.093499126,0.000000612,pos,ns,6.21351289,-0.004743205,0.000591059,-8.024928603,2.12E-14,neg,yes,0.655163078,Adamts6,Adamts6_threeUTR,13,104397979,104398028,104398027,104398028,50,-,TCATCCCTAAGACACTGTGACAGTCCAGCGTAAGTAGCTAAAGTAAGCCG,3' UTR,13,104287835,104496695,208861,1,Adamts6-207,110144,Adamts6-207;Adamts6-202;Adamts6-201;Adamts6-206;Adamts6-203;Adamts6-204,Adamts6;Adamts6;Adamts6;Adamts6;Adamts6;Adamts6,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,19,31,108154,ENSMUSG00000046169,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14590,cg18665803,-0.00000303,0.00000168,-1.797130119,0.07328818,loss,ns,-0.00000201,0.00000286,-0.704296124,0.481777112,neg,ns,0.000300143,0.000838054,0.358143238,0.72047987,pos,ns,0.142378149,-0.0000152,0.0000288,-0.528472618,0.597549475,neg,ns,0.083615034,Sptb,Sptb_fiveUTR,12,76710073,76710122,76710121,76710122,50,+,TAACATTATCTGAGGAGGGACATTCCTGCCGGGGGACATCGCTGCTGCCG,Promoter (<=1kb),12,76580488,76710547,130060,2,Sptb-201,425,Sptb-201;Sptb-202,Sptb;Sptb,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,6,20741,ENSMUSG00000021061,conserved gene but different region,12,76710102,76710748,647,*,647,53,0.680061824,0.708491736,0.081916538,1.15E-35,CpGisland,TRUE,NA,NRS
18826,cg19589604,-0.00000651,0.00000547,-1.189768794,0.235047688,loss,ns,0.00000654,0.00000929,0.70426397,0.481797104,pos,ns,-0.003210782,0.002721753,-1.179674243,0.239034303,neg,ns,0.621539771,0.0000335,0.0000936,0.357757759,0.720768063,pos,ns,0.809800609,E130114P18Rik,E130114P18Rik_Intron,4,97582038,97582087,97582086,97582087,50,+,TCTGCTACGACATCTCGGCCAGAACTTGGTGGATGGTGAGTTGGCAGCCG,"Intron (E130114P18Rik-207/E130114P18Rik, intron 1 of 4)",4,97568133,97584596,16464,2,E130114P18Rik-207,2509,E130114P18Rik-207;E130114P18Rik-201;E130114P18Rik-203;E130114P18Rik-202;E130114P18Rik-206;E130114P18Rik-204;E130114P18Rik-209;E130114P18Rik-208,E130114P18Rik;E130114P18Rik;E130114P18Rik;E130114P18Rik;E130114P18Rik;E130114P18Rik;E130114P18Rik;E130114P18Rik,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,24,319865,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1091,cg14745871,0.0000413,0.00000966,4.275308426,0.0000254,gain,ns,0.0000116,0.0000164,0.704173299,0.481853482,pos,ns,0.007772215,0.004807323,1.616744828,0.106950488,pos,ns,0.97081723,-0.000144476,0.000165323,-0.873900505,0.382848916,neg,ns,0.07272159,Ptprg,Ptprg_fiveUTR,14,11553498,11553547,11553498,11553499,50,-,CGGCTTTAAAGTCTCTGCCAGGATCCATGCTCACATGTTACTTCCTGTAT,Promoter (<=1kb),14,11553532,12242041,688510,1,Ptprg-201,0,Ptprg-201;Ptprg-204;Ptprg-205,Ptprg;Ptprg;Ptprg,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,8,23,19270,ENSMUSG00000021745,conserved gene but different region,14,11553308,11553499,192,*,192,31,0.755208333,1.152148664,0.161458333,3.11E-31,CpGisland,TRUE,NA,NRS
27781,cg27556492,-0.00000952,0.00000251,-3.793101704,0.000178854,loss,ns,-0.000003,0.00000427,-0.704150152,0.481867874,neg,ns,-0.000299153,0.0012498,-0.239360757,0.810984033,neg,ns,0.090987696,-0.0000171,0.000043,-0.398149316,0.690794184,neg,ns,0.971097546,Gm3809,Gm3809_Intergenic_upstream,1,186909255,186909304,186909303,186909304,50,+,TTTATTGGCTGAAATTAATCGCTGTTTATCCTTCATTCACGTGGAAACCG,Distal Intergenic,1,186960508,186961513,1006,1,Gm3809-201,-51204,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,8,100042375,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27376,cg26036806,0.0000277,0.00000306,9.054358974,1.57E-17,gain,yes,-0.00000366,0.00000519,-0.704058362,0.481924953,neg,ns,0.001824997,0.001521343,1.199595815,0.231212387,pos,ns,0.635988903,-0.0000204,0.0000523,-0.389495553,0.697177037,neg,ns,0.048345389,Zmynd8,Zmynd8_fiveUTR,2,165884700,165884749,165884700,165884701,50,-,CGGCTGATGATCTGGCCGCCTAATAAAAGCTCATCCCCGATTGGCTGCCC,Promoter (<=1kb),2,165784152,165884751,100600,2,Zmynd8-221,2,Zmynd8-221;Zmynd8-203;Zmynd8-220;Zmynd8-201;Zmynd8-218;Zmynd8-202;Zmynd8-204;Zmynd8-209;Zmynd8-213;Zmynd8-216;Zmynd8-207;Zmynd8-214,Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8,0;0;0;0;0;0;0;0;-4798;-490;-461;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,12,228880,ENSMUSG00000039671,conserved gene and region,2,165884700,165884821,122,*,122,10,0.565573771,1.026936027,0.081967213,0.000000423,CpGisland,TRUE,U6,En-Sp
7836,cg18217031,-0.000126642,0.0000155,-8.164845473,8.20E-15,loss,yes,-0.0000186,0.0000264,-0.704046013,0.481932632,neg,ns,-0.014557948,0.007719836,-1.885784603,0.060258787,neg,ns,1.219979613,0.000305124,0.000265485,1.149308537,0.251314723,pos,ns,0.556682443,Bcl9l,Bcl9l_Intron,9,44499954,44500003,44499954,44499955,50,-,CGGCAGCAGCAGGACAGCAGAGCTGAAATAAATCTGAGCTGGTGTGGAAT,"Intron (Bcl9l-206/Bcl9l, intron 1 of 7)",9,44482825,44510422,27598,1,Bcl9l-206,17129,Bcl9l-206;Bcl9l-202;Bcl9l-203;Bcl9l-205;Bcl9l-201;Bcl9l-204,Bcl9l;Bcl9l;Bcl9l;Bcl9l;Bcl9l;Bcl9l,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,9,80288,ENSMUSG00000063382,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27422,cg15779017,0.0000327,0.0000043,7.591169809,3.75E-13,gain,yes,-0.00000515,0.00000731,-0.70396862,0.481980761,neg,ns,0.00411782,0.002142252,1.922192132,0.055497879,pos,ns,1.255723618,-0.0000423,0.0000737,-0.57366001,0.566613837,neg,ns,0.123199707,Lmx1a,Lmx1a_Exon,1,167692001,167692050,167692049,167692050,50,+,TCTGTCTGCGAGGGCTGTCAGCGGGTCATCTTGGACAGGTTTCTGCTGCG,"Exon (Lmx1a-202/Lmx1a, exon 3 of 9)",1,167689237,167848741,159505,1,Lmx1a-202,2764,Lmx1a-202;Lmx1a-201,Lmx1a;Lmx1a,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,6,110648,ENSMUSG00000026686,conserved gene and region,1,167691914,167692082,169,*,169,11,0.609467456,0.720542636,0.065088757,0.000000917,CpGisland,TRUE,U3,Pr-B
24716,cg21636128,-0.00000324,0.00000146,-2.225623731,0.026758379,loss,ns,0.00000174,0.00000248,0.703959277,0.481986571,pos,ns,0.00177823,0.000725123,2.452313976,0.014745107,pos,ns,1.831352078,-0.000053,0.0000249,-2.123669314,0.034489487,neg,ns,0.961164729,Ccnt2,Ccnt2_Exon,1,127803400,127803449,127803400,127803401,50,-,CGGACATCTCAGCACCCTCGTGAAACTGGACAAGAAGCCAGTGGAGACCA,"Exon (Ccnt2-202/Ccnt2, exon 10 of 10)",1,127774164,127805932,31769,1,Ccnt2-202,29236,Ccnt2-205;Ccnt2-202;Ccnt2-201;Ccnt2-207,Ccnt2;Ccnt2;Ccnt2;Ccnt2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,11,72949,ENSMUSG00000026349,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24424,cg03309043,0.0000382,0.0000152,2.522377999,0.01215686,gain,ns,-0.0000181,0.0000257,-0.703769355,0.482104691,neg,ns,0.012025037,0.007541418,1.594532759,0.111835745,pos,ns,0.951419364,-0.000732918,0.000259349,-2.825995433,0.005019411,neg,ns,0.436808836,Grik3,Grik3_Intron,4,125697725,125697774,125697725,125697726,50,-,CGTCTTGGAAGATAAAAATTAATTAGGAGATGAAAAAAGAGGCCTTTGAA,"Intron (Grik3-201/Grik3, intron 13 of 15)",4,125490700,125714173,223474,1,Grik3-201,207025,Grik3-201,Grik3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,14,18,14807,ENSMUSG00000001985,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24951,cg17696796,-0.00000252,0.00000197,-1.275889388,0.202949779,loss,ns,0.00000236,0.00000335,0.703289247,0.48240336,pos,ns,0.000215991,0.000981825,0.219989464,0.826024156,pos,ns,0.083007252,-0.00000878,0.0000338,-0.260097568,0.794961181,neg,ns,0.958472531,Fgfr2,Fgfr2_threeUTR,7,130196149,130196198,130196197,130196198,50,+,CTTTAAACTCTTTATCTACTTTCTGTTACCTGTCTCCGCAGGGGGATACG,3' UTR,7,130162451,130266263,103813,2,Fgfr2-211,70065,Fgfr2-211;Fgfr2-217;Fgfr2-207;Fgfr2-226;Fgfr2-215;Fgfr2-201;Fgfr2-202;Fgfr2-203;Fgfr2-204;Fgfr2-205;Fgfr2-206;Fgfr2-208;Fgfr2-209;Fgfr2-210;Fgfr2-212;Fgfr2-213;Fgfr2-214;Fgfr2-216;Fgfr2-222;Fgfr2-225;Fgfr2-218,Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,9,79,14183,ENSMUSG00000030849,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25922,cg19142100,-0.0000064,0.00000881,-0.725562015,0.468654689,loss,ns,0.0000105,0.000015,0.703084704,0.482530635,pos,ns,0.003602395,0.004387126,0.821128601,0.412204032,pos,ns,0.384887765,-0.000289096,0.000150873,-1.9161543,0.056264921,neg,ns,0.802072651,Mid2,Mid2_Exon,X,140763768,140763817,140763816,140763817,50,+,ATGATCCTGTCTGGCTTGCCTGCCCCAGATTTTATTGATTACCCTGAGCG,"Exon (Mid2-202/Mid2, exon 10 of 10)",20,140664956,140767715,102760,1,Mid2-202,98812,Mid2-202;Mid2-201;Mid2-203,Mid2;Mid2;Mid2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,11,23947,ENSMUSG00000000266,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9542,cg14270348,0.0000109,0.00000349,3.126930311,0.001933955,gain,ns,0.00000417,0.00000594,0.703015606,0.482573635,pos,ns,0.001261672,0.001739108,0.72547045,0.468710761,pos,ns,0.329095076,-0.0000355,0.0000598,-0.594050855,0.552911349,neg,ns,0.054424847,Nav2,Nav2_fiveUTR,7,49246927,49246976,49246975,49246976,50,-,AGCCCCGGGAGAAGATGCCGGCCATCCTGGTCGCCTCCAAAATGAAGTCG,5' UTR,7,48959097,49606821,647725,1,Nav2-204,287830,Nav2-204;Nav2-214;Nav2-202;Nav2-216;Nav2-208,Nav2;Nav2;Nav2;Nav2;Nav2,0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,7,78286,ENSMUSG00000052512,conserved gene but different region,7,49246830,49247032,203,*,203,25,0.719211823,0.970548862,0.123152709,8.44E-22,CpGisland,TRUE,U3,Pr-B
14233,cg10613081,0.000119331,0.0000281,4.253889005,0.0000279,gain,ns,0.0000335,0.0000477,0.703002485,0.4825818,pos,ns,0.076102739,0.013961925,5.450734007,0.000000102,pos,ns,6.989298817,0.000103992,0.000480149,0.216583534,0.828675376,pos,ns,0.568277772,Onecut1,Onecut1_Promoter,9,74857221,74857270,74857221,74857222,50,-,CGCAAACACTAATTGATTAGACACCAAAATGATTTGTTTAAAGAGTTTTC,Promoter (4-5kb),9,74861921,74891781,29861,1,Onecut1-201,-4700,Onecut1-201,Onecut1,0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,1,28,15379,ENSMUSG00000043013,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
9131,cg12378341,-0.00000993,0.00000217,-4.585190674,0.00000659,loss,ns,0.00000259,0.00000368,0.702971071,0.482601349,pos,ns,0.001360753,0.001077904,1.262405616,0.207751718,pos,ns,0.682455375,-0.0000695,0.0000371,-1.874230143,0.06183907,neg,ns,0.055875451,Taf5,Taf5_Promoter,19,47068410,47068459,47068458,47068459,50,+,TGCGGGCTTGTTTTGAATTTCCTGGGCCCGCCTCTAGGGCCACATGCCCG,Promoter (<=1kb),19,47067746,47083479,15734,1,Taf5-201,664,Taf5-201,Taf5,0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,2,10,226182,ENSMUSG00000025049,conserved gene and region,19,47067495,47068485,991,*,991,110,0.696266398,0.916628127,0.110998991,8.88E-89,CpGisland,TRUE,NA,NRS
3093,cg21628818,0.0000368,0.00000514,7.150307499,6.25E-12,gain,yes,-0.00000614,0.00000873,-0.702959604,0.482608486,neg,ns,0.006357835,0.002558374,2.485107627,0.013478394,pos,ns,1.870361864,-0.000119188,0.000088,-1.354682342,0.176505244,neg,ns,0.06409896,Lhfpl3,Lhfpl3_Exon,5,22746230,22746279,22746230,22746231,50,+,CGGCTCAGGAGGCTGCCAAGCTGTACCACACCAACTATGTGCGGAACTCG,Promoter (<=1kb),5,22746059,23275597,529539,1,Lhfpl3-202,171,Lhfpl3-202,Lhfpl3,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,11,269629,ENSMUSG00000106379,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
5277,cg07551190,-0.0000301,0.0000086,-3.503408437,0.000526953,loss,ns,0.0000103,0.0000146,0.702596123,0.482834723,pos,ns,0.001211402,0.004280232,0.283022651,0.77734837,pos,ns,0.109384308,-0.0000613,0.000147197,-0.416725958,0.677167268,neg,ns,0.802461178,Ranbp17,Ranbp17_Intron,11,33297467,33297516,33297467,33297468,50,+,CGTTAGCGCAGAGCAGATGGAGTAATAATCAGGCAATAATGACCACATAT,"Intron (Ranbp17-202/Ranbp17, intron 19 of 27)",11,33211795,33513746,301952,2,Ranbp17-202,216230,Ranbp17-202;Ranbp17-206;Ranbp17-203,Ranbp17;Ranbp17;Ranbp17,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,31,66011,ENSMUSG00000040594,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22896,cg04670354,0.00000636,0.00000466,1.36608966,0.172901,gain,ns,0.00000556,0.00000791,0.70256023,0.482857066,pos,ns,-0.00058586,0.002318092,-0.252733742,0.800641473,neg,ns,0.096561917,-0.0000902,0.0000797,-1.130968693,0.258942459,neg,ns,0.653687941,Gadl1,Gadl1_Exon,9,116074009,116074058,116074057,116074058,50,-,GGAAAGGTCAACTTCTTCCGCCAGGTGGTGATCAGCCCTCAAGTGAGCCG,"Exon (Gadl1-201/Gadl1, exon 15 of 15)",9,115909455,116076176,166722,1,Gadl1-201,164554,Gadl1-201;Gadl1-203,Gadl1;Gadl1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,73748,ENSMUSG00000056880,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8735,cg14051635,-0.00000913,0.00000236,-3.875597171,0.000129836,loss,ns,-0.00000281,0.000004,-0.702394557,0.482960206,neg,ns,-0.000317982,0.001173005,-0.271083551,0.786507188,neg,ns,0.104297304,-0.0000581,0.0000403,-1.439930451,0.150896162,neg,ns,0.955498469,Tmem63b,Tmem63b_Exon,17,45661450,45661499,45661498,45661499,50,+,ACACCTTGTAGTTGTGGGCACTGAGGTATTTGAAGTGTCCAAAGCAGACG,"Exon (Tmem63b-201/Tmem63b, exon 22 of 24)",17,45660171,45686259,26089,2,Tmem63b-201,24760,Capn11-201;Capn11-202;Tmem63b-201;Tmem63b-208;Tmem63b-203,Capn11;Capn11;Tmem63b;Tmem63b;Tmem63b,-2125;-2153;0;0;4955,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,12,224807,ENSMUSG00000036026,conserved gene and region,17,45661498,45661625,128,*,128,9,0.59375,0.825806452,0.0703125,0.00000707,CpGisland,TRUE,NA,NRS
6881,cg11929511,-0.0000178,0.00000466,-3.818285664,0.000162289,loss,ns,0.00000557,0.00000792,0.702366492,0.482977678,pos,ns,-0.002294765,0.002321605,-0.988439058,0.323708525,neg,ns,0.489845864,-0.0000671,0.0000798,-0.840169982,0.401460598,neg,ns,0.072273616,Kdm7a,Kdm7a_Intron,6,39205484,39205533,39205484,39205485,50,-,CGCCCTTTATTAGCCTCACACTTTGATTACAAAACACACGAGTCGGCGGC,"Intron (Kdm7a-201/Kdm7a, intron 1 of 19)",6,39136623,39206789,70167,2,Kdm7a-201,1256,Kdm7a-201,Kdm7a,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,8,338523,ENSMUSG00000042599,conserved gene and region,6,39205446,39207371,1926,*,1926,267,0.729491173,1.042169774,0.138629284,2.72E-244,CpGisland,TRUE,U1,Pr-A
2131,cg20105676,0.0000187,0.00000313,5.975376773,6.30E-09,gain,yes,-0.00000374,0.00000532,-0.702309034,0.483013452,neg,ns,-0.002207635,0.001559981,-1.415168162,0.158022949,neg,ns,0.801279837,0.0000671,0.0000536,1.251072375,0.211851415,pos,ns,0.074532505,Bhlhe22,Bhlhe22_fiveUTR,3,18054375,18054424,18054423,18054424,50,+,TAATAACCTACTCAGAGATAATGATGTAAAAGACTCCCCCGTCTGTGGCG,Promoter (<=1kb),3,18054174,18057517,3344,1,Bhlhe22-201,201,Bhlhe22-201,Bhlhe22,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,9,22,59058,ENSMUSG00000025128,conserved gene and region,3,18054414,18055574,1161,*,1161,142,0.711455642,0.972379014,0.122308355,3.49E-121,CpGisland,TRUE,U3,Pr-B
223,cg12591580,0.000000343,0.00000523,0.06549324,0.947823503,gain,ns,-0.00000624,0.00000889,-0.70219449,0.483084773,neg,ns,-0.000744672,0.002603065,-0.286074919,0.775011815,neg,ns,0.110691677,-0.0000569,0.0000895,-0.635178755,0.525780387,neg,ns,0.833714838,Gm21992,Gm21992_threeUTR,19,4801608,4801657,4801608,4801609,50,+,CGCTGGTAGCCAGAGTGCATCTGAGCCGCCCGCAGGTAATCATTATAGGA,3' UTR,19,4742913,4811612,68700,2,Gm21992-203,9955,Gm21992-203;Gm21992-206;Gm21992-204;Gm21992-201;Gm21992-205;Gm21992-202;Rbm14-201;Rbm14-202;Rbm14-203,Gm21992;Gm21992;Gm21992;Gm21992;Gm21992;Gm21992;Rbm14;Rbm14;Rbm14,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,21,48,102902673,ENSMUSG00000096370,mapped to different genes,19,4801605,4801812,208,*,208,24,0.586538462,1.371428571,0.115384615,3.42E-20,CpGisland,TRUE,U10,Tr-S
2426,cg27046016,0.00000268,0.0000041,0.654375751,0.513354929,gain,ns,0.00000489,0.00000696,0.702181293,0.48309299,pos,ns,0.005057835,0.002040253,2.479023878,0.013705821,pos,ns,1.863094948,-0.000193295,0.0000702,-2.754902476,0.006218006,neg,ns,0.894919627,Olig3,Olig3_Intergenic_downstream,10,19414816,19414865,19414816,19414817,50,+,CGATGCCCCACAAACCCAATTGTAGGCAGATCAATACTGTCATAAGACAA,Distal Intergenic,10,19356533,19358604,2072,1,Olig3-201,58283,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,9,94222,ENSMUSG00000045591,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20620,cg15842149,0.00000386,0.0000039,0.988223474,0.323813902,gain,ns,-0.00000466,0.00000663,-0.702147025,0.483114328,neg,ns,0.004179706,0.00194323,2.150906394,0.032256276,pos,ns,1.49138578,-0.000209298,0.0000668,-3.131919369,0.001902393,neg,ns,0.922772067,Rsbn1,Rsbn1_threeUTR,3,103964049,103964098,103964049,103964050,50,-,CGATAGAAAAGTAACCATCAGCAAATACTGCAGTGATTAGTTAGAATCTG,3' UTR,3,103914120,103966613,52494,1,Rsbn1-201,49929,Phtf1-204;Phtf1-202;Phtf1-207;Phtf1-201;Phtf1-208;Phtf1-205;Phtf1-203;Phtf1-210;Phtf1-209;Rsbn1-201;Rsbn1-202;Rsbn1-203;Rsbn1-204,Phtf1;Phtf1;Phtf1;Phtf1;Phtf1;Phtf1;Phtf1;Phtf1;Phtf1;Rsbn1;Rsbn1;Rsbn1;Rsbn1,-4012;-4160;0;-4270;-4274;-4276;-4348;-4490;-4827;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,TRUE,FALSE,threeUTR,6,16,229675,ENSMUSG00000044098,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25518,cg03558811,0.0000207,0.00000886,2.337603147,0.02004387,gain,ns,0.0000106,0.0000151,0.702094147,0.483147255,pos,ns,-0.000661297,0.004411916,-0.149888907,0.880949736,neg,ns,0.05504887,0.000244133,0.000151725,1.609046416,0.108624048,pos,ns,0.730682514,Fam199x,Fam199x_Exon,X,137075584,137075633,137075584,137075585,50,-,CGAAGAGGTGCTGTCCTTGAAAGTGACTGAGGAAGACCATGAAGCAGATG,"Exon (Fam199x-201/Fam199x, exon 6 of 6)",20,137049594,137082503,32910,1,Fam199x-201,25990,Fam199x-201,Fam199x,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,245622,ENSMUSG00000042595,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24204,cg07014255,0.00000344,0.00000282,1.222780671,0.222341337,gain,ns,-0.00000336,0.00000478,-0.702022168,0.483192079,neg,ns,0.004742994,0.001401831,3.383426507,0.000807806,pos,ns,3.092692823,-0.000155148,0.0000482,-3.218238909,0.001426333,neg,ns,0.04440353,Macf1,Macf1_fiveUTR,4,123411340,123411389,123411340,123411341,50,+,CGGGGCCAGCTTGGGGCTTCCTGTCTCCAAAACATCATGGCATTGTTGTG,5' UTR,4,123349633,123684360,334728,2,Macf1-203,272971,Macf1-203;Macf1-209;Macf1-215;Macf1-218;Macf1-217;Macf1-201;Macf1-205;Macf1-202;Macf1-206;Macf1-208,Macf1;Macf1;Macf1;Macf1;Macf1;Macf1;Macf1;Macf1;Macf1;Macf1,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,16,11426,ENSMUSG00000028649,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U4,Pr-F
11968,cg03934905,0.0000439,0.00000423,10.37441954,7.67E-22,gain,yes,-0.00000505,0.00000719,-0.701972396,0.483223075,neg,ns,0.007515346,0.002106019,3.568507358,0.000415849,pos,ns,3.381064145,-0.0000979,0.0000724,-1.351480747,0.177526859,neg,ns,0.13954607,Tbr1,Tbr1_Exon,2,61806057,61806106,61806057,61806058,50,+,CGGATCCCAATCACTGGAGGTTTCAAGGAGGCAAATGGGTTCCTTGCGGC,"Exon (Tbr1-201/Tbr1, exon 2 of 6)",2,61804453,61814114,9662,1,Tbr1-201,1604,Tbr1-204;Tbr1-201;Tbr1-202;Tbr1-203,Tbr1;Tbr1;Tbr1;Tbr1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,24,27,21375,ENSMUSG00000035033,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
18591,cg16495265,0.0000123,0.00000711,1.724645699,0.085588105,gain,ns,-0.00000847,0.0000121,-0.701908132,0.483263098,neg,ns,-0.006886987,0.003536251,-1.947539294,0.052372675,neg,ns,1.28089524,0.000120197,0.000121611,0.98837297,0.323740826,pos,ns,0.101481105,Hoxb5,Hoxb5_Exon,11,96303647,96303696,96303647,96303648,50,+,CGTTATCCAAATGGCCCGGACTATCAGTTGCTAAATTATGGCAGTGGCAG,Promoter (<=1kb),11,96303336,96306121,2786,1,Hoxb5-202,311,Hoxb5-202;Hoxb5-201;Hoxb6-202;Hoxb6-201,Hoxb5;Hoxb5;Hoxb6;Hoxb6,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,22,34,15413,ENSMUSG00000038700,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
6788,cg07124148,-0.0000011,0.00000125,-0.877320144,0.380992165,loss,ns,0.00000149,0.00000213,0.701778961,0.483343549,pos,ns,-0.000139395,0.000622571,-0.223902154,0.822980926,neg,ns,0.08461023,0.0000137,0.0000214,0.639040856,0.523268241,pos,ns,0.031335595,Azin1,Azin1_fiveUTR,15,38518957,38519006,38518957,38518958,50,-,CGGAATTTTTAAAGAGGGATGTGGTTACCTTGAGCAGAAATACCCAAGGC,Promoter (<=1kb),15,38487427,38519266,31840,2,Azin1-201,260,Azin1-201;Azin1-203;Azin1-205;Azin1-207;Azin1-204;Azin1-208,Azin1;Azin1;Azin1;Azin1;Azin1;Azin1,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,9,54375,ENSMUSG00000037458,conserved gene and region,15,38518240,38518958,719,*,719,80,0.724617524,0.863663664,0.111265647,7.73E-65,CpGisland,TRUE,U1,Pr-A
23427,cg01357874,0.00000427,0.00000326,1.309056509,0.191484716,gain,ns,-0.00000388,0.00000554,-0.701674094,0.483408868,neg,ns,-0.000633977,0.001621912,-0.390882325,0.696152715,neg,ns,0.157295479,0.0000129,0.0000558,0.232139823,0.816582587,pos,ns,0.926502883,Szt2,Szt2_Exon,4,118388618,118388667,118388618,118388619,50,+,CGGTCACTCAGCTCCTGCCCCAGGCAGCTGTGCAGCAGGCACAGCACCAT,"Exon (Szt2-201/Szt2, exon 22 of 72)",4,118362743,118409273,46531,2,Szt2-201,20606,Szt2-201;Szt2-203,Szt2;Szt2,0;1266,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,230676,ENSMUSG00000033253,conserved gene but different region,4,118388457,118388619,163,*,163,11,0.674846626,0.655336257,0.067484663,0.000000642,CpGisland,TRUE,U10,Tr-S
14545,cg05975184,0.0000502,0.00000531,9.467044081,7.60E-19,gain,yes,0.00000632,0.00000902,0.701486265,0.483525874,pos,ns,0.003706451,0.002641211,1.403314619,0.161523878,pos,ns,0.791763266,0.00000625,0.0000908,0.068828263,0.945170695,pos,ns,0.107022018,Gm50360,Gm50360_Intergenic_downstream,18,76379109,76379158,76379157,76379158,50,+,AGCCGAGTGTTTATTAGGAGCTGCTTGTTGCCAGCCGCTTAACTGCTTCG,Distal Intergenic,18,76321824,76322259,436,1,Gm50360-201,57285,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,10,,NA,mapped to different genes,18,76379157,76379218,62,*,62,9,0.758064516,1.068965517,0.14516129,1.18E-08,CpGisland,TRUE,NA,NRS
6225,cg01385056,-0.000000693,0.00000113,-0.6108039,0.541776981,loss,ns,-0.00000135,0.00000193,-0.70144022,0.48355456,neg,ns,0.000516327,0.000564344,0.91491513,0.360947284,pos,ns,0.442556222,-0.0000568,0.0000194,-2.924753992,0.003701532,neg,ns,0.032219042,Lman2l,Lman2l_Exon,1,36445042,36445091,36445042,36445043,50,-,CGCCTCACCCTGGTAGGGCTTCGACAGCGAGTGCTCCCGTTTCAAGTACT,Promoter (<=1kb),1,36422065,36445271,23207,2,Lman2l-204,180,Lman2l-204;Lman2l-205;Lman2l-201;Lman2l-202;Lman2l-203;Lman2l-208,Lman2l;Lman2l;Lman2l;Lman2l;Lman2l;Lman2l,0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,3,214895,ENSMUSG00000001143,conserved gene but different region,1,36444876,36445127,252,*,252,26,0.71031746,0.829367089,0.103174603,1.75E-20,CpGisland,TRUE,U1,Pr-A
24753,cg26105057,-0.0000113,0.00000403,-2.800443043,0.00542366,loss,ns,-0.0000048,0.00000685,-0.701150434,0.483735116,neg,ns,-0.002950139,0.002007305,-1.469701377,0.142656781,neg,ns,0.84570758,-0.0000627,0.000069,-0.908739472,0.364193597,neg,ns,0.030506082,Pan2,Pan2_fiveUTR,10,128303440,128303489,128303440,128303441,50,-,CGCTCCAAAATATCCGCCATGGAGAAATCTTGGTAATGACCCATTCCCCG,Promoter (<=1kb),10,128303335,128321353,18019,1,Pan2-201,105,Il23a-202;Pan2-201;Pan2-204;Pan2-203;Pan2-207;Pan2-206;Pan2-202;Pan2-205,Il23a;Pan2;Pan2;Pan2;Pan2;Pan2;Pan2;Pan2,-4688;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,4,103135,ENSMUSG00000005682,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
1875,cg10538503,0.00000493,0.000000798,6.17208674,2.11E-09,gain,yes,-0.000000951,0.00000136,-0.701114109,0.483757751,neg,ns,0.000781055,0.000397303,1.965893764,0.050203097,pos,ns,1.299269488,-0.0000242,0.0000137,-1.770967626,0.077548662,neg,ns,0.019924791,Trib2,Trib2_Exon,12,15815297,15815346,15815345,15815346,50,-,TTCCAACAATAAGTATTTCCCGATACAAGAAACGCAATGCGACAAGTTCG,"Exon (Trib2-201/Trib2, exon 1 of 3)",12,15791727,15816785,25059,2,Trib2-201,1439,Trib2-201;Trib2-204;Trib2-203;Trib2-202,Trib2;Trib2;Trib2;Trib2,0;0;0;1531,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,2,217410,ENSMUSG00000020601,conserved gene and region,12,15815251,15815466,216,*,216,18,0.564814815,1.04516129,0.083333333,1.33E-12,CpGisland,TRUE,NA,NRS
20335,cg07779605,0.0000566,0.00000552,10.24533645,2.09E-21,gain,yes,0.00000658,0.00000938,0.701099516,0.483766845,pos,ns,0.008463017,0.002749185,3.078373558,0.002267375,pos,ns,2.644476679,-0.0000859,0.0000945,-0.908858646,0.364130779,neg,ns,0.120434462,Hoxc5,Hoxc5_Intron,15,103009460,103009509,103009460,103009461,50,-,CGATTGGCTGGGAGGGGGTCAGCTGACTTTGTCATTTTGTCTGTCCTGGA,"Intron (Hoxc5-202/Hoxc5, intron 1 of 1)",15,102967443,103015676,48234,1,Hoxc5-202,42017,Hoxc5-202;Hoxc5-201;Hoxc6-202;Hoxc6-203;Hoxc6-201,Hoxc5;Hoxc5;Hoxc6;Hoxc6;Hoxc6,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,46,134,15424,ENSMUSG00000022485,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
15095,cg09133264,-0.0000212,0.00000938,-2.25490006,0.02483708,loss,ns,-0.0000112,0.0000159,-0.701009229,0.483823109,neg,ns,0.00534237,0.004669618,1.144070052,0.253477214,pos,ns,0.596061075,-0.000278951,0.000160588,-1.737061497,0.083369584,neg,ns,0.55697445,Gm8345,Gm8345_Intergenic_upstream,13,79141544,79141593,79141544,79141545,50,+,CGCCACTTCACATGATTTATGATGTCATTAATGTCAAGCTATCAGTGGAC,Distal Intergenic,13,78953088,78954792,1705,2,Gm8345-201,-186752,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,13,666883,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
505,cg20053631,-0.00000131,0.00000215,-0.612207098,0.540849519,loss,ns,-0.00000256,0.00000365,-0.700998186,0.483829991,neg,ns,-0.001004506,0.001068088,-0.940470932,0.3477083,neg,ns,0.458784943,0.0000246,0.0000367,0.669305531,0.50379876,pos,ns,0.959719249,Shroom4,Shroom4_Exon,X,6633556,6633605,6633556,6633557,50,+,CGCTACCTGCCTCAGGACCAGCTCCAAGATTACCAGCACTTTGTCAAGAT,"Exon (Shroom4-202/Shroom4, exon 9 of 9)",20,6399854,6633837,233984,1,Shroom4-202,233702,Shroom4-202;Shroom4-201,Shroom4;Shroom4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,208431,ENSMUSG00000068270,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12936,cg10109723,-0.0000374,0.00000784,-4.767186085,0.00000288,loss,ns,-0.00000933,0.0000133,-0.700940373,0.483866021,neg,ns,-0.007526981,0.003901233,-1.929384996,0.054595549,neg,ns,1.262842764,-0.000270821,0.000134163,-2.018597686,0.044389815,neg,ns,0.661633078,Pik3r5,Pik3r5_Exon,11,68475406,68475455,68475454,68475455,50,-,GGCTGTGTCTGAACTGCTGGAGCCTGCAGGAGCTGGTCAGCAGGGACCCG,"Exon (Pik3r5-201/Pik3r5, exon 3 of 19)",11,68432121,68497849,65729,1,Pik3r5-201,43285,Pik3r5-201;Pik3r5-204;Pik3r5-202;Pik3r5-205,Pik3r5;Pik3r5;Pik3r5;Pik3r5,0;0;0;-26,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,320207,ENSMUSG00000020901,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26611,cg21757210,0.000000812,0.00000886,0.091642586,0.927041205,gain,ns,-0.0000106,0.0000151,-0.700868687,0.483910698,neg,ns,-0.006711678,0.004411781,-1.521308131,0.129201858,neg,ns,0.88873124,-0.000252301,0.000151721,-1.662930077,0.097337085,neg,ns,0.83206826,Pex14,Pex14_Intron,4,148988691,148988740,148988739,148988740,50,-,TTGTTGGAACAGTAGAGTACAATAAGGACTCTCAGAGCCTCTAAAAGTCG,"Intron (Pex14-201/Pex14, intron 3 of 8)",4,148960535,149099876,139342,2,Pex14-201,111136,Pex14-201;Pex14-202;Pex14-205;Pex14-203,Pex14;Pex14;Pex14;Pex14,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,41,48,56273,ENSMUSG00000028975,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23679,cg03760995,-0.000000212,0.000000947,-0.223565731,0.823242487,loss,ns,0.00000113,0.00000161,0.700825335,0.483937718,pos,ns,0.001365319,0.000471575,2.895233073,0.004057844,pos,ns,2.391704618,-0.0000522,0.0000162,-3.217824604,0.001428328,neg,ns,0.974531897,Ptpn4,Ptpn4_threeUTR,1,119743344,119743393,119743392,119743393,50,+,TCACTTACCCTTGCATAGTGGAATTCAACTCCATAGAGTTCTAAGGTACG,3' UTR,1,119652467,119837613,185147,2,Ptpn4-201,94220,Ptpn4-201;Ptpn4-203;Ptpn4-206;Ptpn4-202;Ptpn4-210,Ptpn4;Ptpn4;Ptpn4;Ptpn4;Ptpn4,0;0;-1908;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,5,19258,ENSMUSG00000026384,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14875,cg08629862,-0.00000196,0.00000465,-0.420653201,0.674299795,loss,ns,-0.00000554,0.0000079,-0.70065186,0.484045846,neg,ns,0.002476725,0.00231446,1.070109412,0.285402542,pos,ns,0.544542162,-0.000144085,0.0000796,-1.810243529,0.0712262,neg,ns,0.924687288,Phf12,Phf12_threeUTR,11,78030056,78030105,78030104,78030105,50,-,CATACAGCAAAATCTATACAATATCATTGTTTTATTTAATATAAAGATCG,3' UTR,11,77982802,78030539,47738,1,Phf12-201,47254,Dhrs13-201;Dhrs13-204;Dhrs13-203;Dhrs13-202;Phf12-202;Phf12-201;Phf12-207;Phf12-206;Phf12-208;Phf12-205;Phf12-203;Phf12-204,Dhrs13;Dhrs13;Dhrs13;Dhrs13;Phf12;Phf12;Phf12;Phf12;Phf12;Phf12;Phf12;Phf12,-2175;-2244;-2247;-2254;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,11,27,268448,ENSMUSG00000037791,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11549,cg26434265,0.0000181,0.00000257,7.057748745,1.11E-11,gain,yes,0.00000305,0.00000436,0.700615572,0.484068466,pos,ns,0.003010022,0.001276846,2.357388541,0.019025256,pos,ns,1.720669499,-0.0000493,0.0000439,-1.123446921,0.262116988,neg,ns,0.075917676,Vax1,Vax1_Exon,19,59166182,59166231,59166230,59166231,50,-,TAAAATCAGTCCAGCGCTTTTTTCTCGGCCCCTTCTTTATTGTTGGTCCG,"Exon (Vax1-201/Vax1, exon 3 of 3)",19,59166187,59170056,3870,2,Vax1-201,3825,Vax1-201;Vax1-202,Vax1;Vax1,0;749,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,18,22326,ENSMUSG00000006270,conserved gene and region,19,59166196,59166781,586,*,586,66,0.711604096,0.891152074,0.112627986,5.51E-54,CpGisland,TRUE,U3,Pr-B
14215,cg16835578,-0.000001,0.00000119,-0.842166044,0.400344253,loss,ns,0.00000141,0.00000202,0.700489314,0.484147175,pos,ns,0.000754613,0.000591211,1.276383906,0.202775225,pos,ns,0.692985109,0.0000149,0.0000203,0.733604098,0.463744493,pos,ns,0.027750247,Mnt,Mnt_Intron,11,74832018,74832067,74832018,74832019,50,+,CGTGTCTTATGATCCTGGCCAGCCCCGCCTGACCCCGCCTCCCAGAGCTG,"Intron (Mnt-201/Mnt, intron 1 of 5)",11,74830920,74845725,14806,1,Mnt-201,1098,Mettl16-205;Mnt-201;Mnt-203,Mettl16;Mnt;Mnt,61188;0;-4259,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,17,17428,ENSMUSG00000000282,conserved gene and region,11,74831764,74832137,374,*,374,30,0.628342246,0.846536895,0.080213904,3.52E-20,CpGisland,TRUE,U1,Pr-A
22392,cg05742069,0.0000477,0.00000812,5.873061125,0.000000011,gain,yes,0.00000966,0.0000138,0.700421526,0.484189436,pos,ns,-0.004342282,0.0040418,-1.074343755,0.283504149,neg,ns,0.547440582,0.000263779,0.000138997,1.897725922,0.05866109,pos,ns,0.589522714,Sdk2,Sdk2_Intron,11,113975442,113975491,113975442,113975443,50,-,CGTCTGTTAACGAGGGAGATAAACGGAGAGGCCATCAAAGCAGATTTCCA,"Intron (Sdk2-201/Sdk2, intron 1 of 44)",11,113776374,114066218,289845,2,Sdk2-201,90727,Sdk2-201;Sdk2-203;Sdk2-205;Sdk2-204,Sdk2;Sdk2;Sdk2;Sdk2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,11,237979,ENSMUSG00000041592,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12826,cg20728339,0.0000688,0.000018,3.828759669,0.000155836,gain,ns,0.0000214,0.0000305,0.70012388,0.484375022,pos,ns,-0.005776765,0.008941035,-0.646095754,0.518695339,neg,ns,0.285087654,0.000627826,0.000307481,2.041833761,0.042014178,pos,ns,0.404842896,Ebf2,Ebf2_Intron,14,67242255,67242304,67242303,67242304,50,+,GTCTTTATCGGCCAGATGGTGTGAATTTAGACACTTTTGTTATGCAATCG,"Intron (Ebf2-201/Ebf2, intron 6 of 16)",14,67233292,67429777,196486,1,Ebf2-201,8963,Ebf2-201;Ebf2-203;Ebf2-202,Ebf2;Ebf2;Ebf2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,21,13592,ENSMUSG00000022053,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10038,cg11393715,-0.00000867,0.00000557,-1.555899557,0.120752267,loss,ns,-0.00000663,0.00000947,-0.700099079,0.484390488,neg,ns,0.009871698,0.00277296,3.559985437,0.000429027,pos,ns,3.367515488,-0.000376477,0.0000954,-3.947877244,0.0000976,neg,ns,0.872328961,Dhx15,Dhx15_Intergenic_downstream,5,52088214,52088263,52088262,52088263,50,-,TAATGACCTTAACTTGGGTAATCCATTTGTTGACAGCAGGTGATAATTCG,Distal Intergenic,5,52153324,52157803,4480,2,Dhx15-206,69589,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,14,13204,ENSMUSG00000029169,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25342,cg13956569,-0.0000128,0.0000045,-2.846273183,0.004718308,loss,ns,-0.00000536,0.00000765,-0.700071185,0.484407882,neg,ns,-0.003904058,0.002241229,-1.74192693,0.082513067,neg,ns,1.08347727,0.0000753,0.0000771,0.976664309,0.329496895,pos,ns,0.917594289,Nav1,Nav1_Exon,1,135465871,135465920,135465871,135465872,50,+,CGAATCATTCCCTTGGGTCTCTCGGCCAGGGACAGGGTGCTCCCCATTTG,"Exon (Nav1-201/Nav1, exon 10 of 30)",1,135434580,135585355,150776,2,Nav1-201,119435,Nav1-201;Nav1-202;Nav1-208;Nav1-205;Nav1-209;Nav1-206;Nav1-207,Nav1;Nav1;Nav1;Nav1;Nav1;Nav1;Nav1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,12,215690,ENSMUSG00000009418,mapped to different genes,1,135465776,135465997,222,*,222,16,0.630630631,0.746846089,0.072072072,2.79E-10,CpGisland,TRUE,NA,NRS
13430,cg24648594,0.000000322,0.00000142,0.226111289,0.821263873,gain,ns,-0.00000169,0.00000242,-0.700057902,0.484416166,neg,ns,-0.000417473,0.000707846,-0.589779993,0.555767771,neg,ns,0.255106642,0.0000204,0.0000243,0.839381152,0.401902287,pos,ns,0.042848011,Sp5,Sp5_fiveUTR,2,70475023,70475072,70475071,70475072,50,+,GGGTAGCGGCAAACTTCAAAGCCATAAATCTTCCCTCTGACTGGCTGGCG,Promoter (<=1kb),2,70474923,70477729,2807,1,Sp5-201,100,Sp5-201,Sp5,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,7,11,64406,ENSMUSG00000075304,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
22368,cg22088276,-0.00000624,0.00000657,-0.949513458,0.343099171,loss,ns,0.00000781,0.0000112,0.700012109,0.484444723,pos,ns,-0.006627693,0.003269358,-2.027215407,0.043495783,neg,ns,1.361552846,0.000273676,0.000112433,2.434130062,0.015492006,pos,ns,0.865726999,Spon1,Spon1_Intergenic_upstream,7,113694333,113694382,113694333,113694334,50,+,CGCTCTGGTGTTCAAGGACAATCAGATTCAGCAAAGCGTGAAATCAGTTT,Distal Intergenic,7,113765998,114043370,277373,1,Spon1-201,-71616,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,233744,ENSMUSG00000038156,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14341,cg04777174,-0.00000504,0.00000542,-0.931552817,0.352292584,loss,ns,-0.00000644,0.0000092,-0.699875518,0.484529909,neg,ns,-0.005843026,0.002695165,-2.167966418,0.030921854,neg,ns,1.509734481,0.000069,0.0000927,0.744802697,0.456955262,pos,ns,0.778320578,Ltbp1,Ltbp1_Exon,17,75179054,75179103,75179054,75179055,50,-,CGCATCAAGGTGGTCTTTACTCCGAGCATCTGTAAAGTGACCTGCACCAA,"Exon (Ltbp1-210/Ltbp1, exon 5 of 35)",17,75005568,75391328,385761,1,Ltbp1-210,173486,Ltbp1-210;Ltbp1-201;Ltbp1-205;Ltbp1-203;Ltbp1-202,Ltbp1;Ltbp1;Ltbp1;Ltbp1;Ltbp1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,9,268977,ENSMUSG00000001870,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24639,cg05573165,-0.00000109,0.00000132,-0.820592506,0.412508963,loss,ns,-0.00000157,0.00000225,-0.699851773,0.484544718,neg,ns,0.000948626,0.000659181,1.439097942,0.151131697,pos,ns,0.82064444,-0.000058,0.0000227,-2.55643536,0.011051474,neg,ns,0.971845709,Pard3,Pard3_Exon,8,127409632,127409681,127409632,127409633,50,-,CGCACAAAGCAATTTTCAGATGCCAGTCAATTGGATTTCGTTAAAACACG,"Exon (Pard3-219/Pard3, exon 17 of 25)",8,127063893,127611970,548078,1,Pard3-219,345739,Pard3-219;Pard3-202;Pard3-209;Pard3-211;Pard3-222;Pard3-201;Pard3-224;Pard3-210;Pard3-216;Pard3-223;Pard3-221;Pard3-213;Pard3-206;Pard3-214;Pard3-220;Pard3-215;Pard3-227,Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,8,93742,ENSMUSG00000025812,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21365,cg26984034,-0.0000272,0.00000914,-2.97430878,0.003167102,loss,ns,0.0000109,0.0000155,0.699693144,0.48464366,pos,ns,0.001703423,0.004550049,0.374374692,0.70838152,pos,ns,0.149732777,-0.000122671,0.000156476,-0.783960676,0.433661773,neg,ns,0.264746827,Myf6,Myf6_Exon,10,107493831,107493880,107493879,107493880,50,-,AGCCCCCTGGAATGATCGGAAACACTTGGCCACTGGGAGCTGCAGGTGCG,Promoter (<=1kb),10,107492853,107494737,1885,2,Myf6-201,857,Myf6-201,Myf6,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,17878,ENSMUSG00000035923,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22243,cg27622181,-0.0000381,0.00000788,-4.826942333,0.00000218,loss,ns,-0.00000937,0.0000134,-0.699620575,0.484688927,neg,ns,-0.007921851,0.003924353,-2.018638864,0.044385507,neg,ns,1.352758818,0.000315849,0.000134958,2.340344156,0.019899959,pos,ns,0.854373977,Ankrd55,Ankrd55_Exon,13,112323025,112323074,112323073,112323074,50,+,AAAGGCTGTTGAAATGTCTCATTCCAGGATGCACGCCCTTGATGCATGCG,"Exon (Ankrd55-202/Ankrd55, exon 3 of 6)",13,112288451,112344641,56191,1,Ankrd55-202,34574,Ankrd55-202;Ankrd55-206;Ankrd55-204;Ankrd55-203;Ankrd55-201;Ankrd55-205,Ankrd55;Ankrd55;Ankrd55;Ankrd55;Ankrd55;Ankrd55,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,77318,ENSMUSG00000049985,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
298,cg10183725,-0.0000546,0.00000916,-5.963955346,6.71E-09,loss,yes,-0.0000109,0.0000156,-0.699599757,0.484701914,neg,ns,-0.006867282,0.004557712,-1.506738765,0.132895949,neg,ns,0.876488258,-0.000126554,0.000156739,-0.807417433,0.420045105,neg,ns,0.776394106,Ubn1,Ubn1_Exon,16,5063676,5063725,5063676,5063677,50,-,CGGAAGTTGAAGGAAGGTGGTGAGAAGATAAAGAAGAAGAAAAAAGATGA,"Exon (Ubn1-207/Ubn1, exon 6 of 18)",16,5050057,5086289,36233,1,Ubn1-207,13619,Ubn1-207;Ubn1-201;Ubn1-203;Ubn1-202;Ubn1-206,Ubn1;Ubn1;Ubn1;Ubn1;Ubn1,0;0;0;1268;-681,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,Exon,1,1,170644,ENSMUSG00000039473,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3302,cg01380208,-0.00000205,0.0000157,-0.130893466,0.895944485,loss,ns,0.0000186,0.0000266,0.699366117,0.484847672,pos,ns,-0.004660752,0.007793841,-0.598004448,0.550273586,neg,ns,0.259421333,0.000258098,0.00026803,0.96294755,0.336324375,pos,ns,0.639271964,Gm11889,Gm11889_Intergenic_downstream,4,23514184,23514233,23514184,23514185,50,-,CGACAGTTCTAAGCTGTGGCATGCTTTGAAATAAGTGTTGTACAAGGCAG,Distal Intergenic,4,23517362,23518440,1079,2,Gm11889-201,4256,Gm11889-201,Gm11889,4207,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,8,383998,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23263,cg04486940,-0.00000225,0.00000163,-1.375811341,0.16987323,loss,ns,-0.00000194,0.00000277,-0.699347137,0.484859514,neg,ns,-0.001407353,0.000812787,-1.731514678,0.084354866,neg,ns,1.073889859,0.0000631,0.000028,2.255721806,0.02478493,pos,ns,0.962158311,Eri3,Eri3_Exon,4,117637296,117637345,117637344,117637345,50,-,GATTTTGAGAGGTGTAATGATAGAAAGACTCGCTCGGCTGGCGGCCTGCG,Promoter (<=1kb),4,117637338,117674281,36944,1,Eri3-203,0,Eri3-201;Eri3-206;Eri3-203,Eri3;Eri3;Eri3,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,97,140546,ENSMUSG00000033423,conserved gene but different region,4,117637294,117637471,178,*,178,15,0.634831461,0.841740227,0.084269663,1.21E-10,CpGisland,TRUE,U11,Tr-P
6000,cg02105144,0.00009,0.000021,4.295028991,0.0000234,gain,ns,-0.0000249,0.0000356,-0.699338244,0.484865063,neg,ns,0.029810632,0.010431826,2.857661878,0.004556495,pos,ns,2.341369126,-0.000781925,0.00035875,-2.179585265,0.030040536,neg,ns,0.24704267,Cxxc5,Cxxc5_Intron,18,35816290,35816339,35816290,35816291,50,+,CGGAACAGCCTCCCTGACAGATGGACCCACGGAGGCTGGGCTGCTTCAGC,"Intron (Gm50371-201/Gm50371-201, intron 4 of 4)",18,35829397,35859002,29606,1,Cxxc5-202,-13058,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,49,67393,ENSMUSG00000046668,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
10426,cg02002408,0.0000003,0.00000161,0.186192255,0.852415776,gain,ns,-0.00000191,0.00000273,-0.699211165,0.484944353,neg,ns,0.000708289,0.000800986,0.884271104,0.377235183,pos,ns,0.423387809,0.00000629,0.0000275,0.228511682,0.81939914,pos,ns,0.079530494,Septin8,Septin8_fiveUTR,11,53519866,53519915,53519866,53519867,50,-,CGCCGCCAAGGGGAGTTTCCAGGAAGTGGCCATATTGGATCCATTCAGCC,Promoter (<=1kb),11,53519908,53541898,21991,1,Septin8-203,0,Septin8-205;Septin8-201;Septin8-204;Septin8-202;Septin8-203;Septin8-207,Septin8;Septin8;Septin8;Septin8;Septin8;Septin8,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,6,9,,NA,mapped to different genes,11,53519650,53519870,221,*,221,27,0.778280543,0.808536585,0.122171946,2.06E-23,CpGisland,TRUE,U1,Pr-A
713,cg24611541,-0.000118455,0.0000235,-5.030844881,0.000000829,loss,yes,0.000028,0.00004,0.698951989,0.485106088,pos,ns,0.013525964,0.011718969,1.154193962,0.249309664,pos,ns,0.603260886,-0.001212503,0.000403014,-3.008583766,0.002839858,neg,ns,0.813846944,Nipbl,Nipbl_Exon,15,8291262,8291311,8291262,8291263,50,+,CGTAAAGTCTGAACAACTTTATTAGTCAGCTTATTAGCACTCGTTAGAGC,"Exon (Nipbl-201/Nipbl, exon 47 of 47)",15,8290617,8444463,153847,2,Nipbl-201,153152,Nipbl-201,Nipbl,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,19,36,71175,ENSMUSG00000022141,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9744,cg02073290,0.00000248,0.00000251,0.98852102,0.323668467,gain,ns,-0.00000298,0.00000427,-0.698848728,0.485170535,neg,ns,-0.001391894,0.001250371,-1.113184611,0.26649157,neg,ns,0.574316524,-0.000035,0.000043,-0.814445362,0.41601506,neg,ns,0.942122797,Gm42459,Gm42459_Intron,5,50457701,50457750,50457701,50457702,50,-,CGCCAATTATCCTCCATGCAATTATGGTGATCCCAGAAGCAAGCAGATGG,"Intron (Gm36814-201/Gm36814-201, intron 10 of 10)",5,50517473,50518214,742,1,Gm42459-201,-59772,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23356,cg10437066,0.00000142,0.00000278,0.509234931,0.61094984,gain,ns,0.00000331,0.00000473,0.698846053,0.485172205,pos,ns,0.00167201,0.001385638,1.20667164,0.22847863,pos,ns,0.641154415,-0.0000678,0.0000477,-1.423012687,0.15573803,neg,ns,0.959156811,Smg1,Smg1_threeUTR,7,118139476,118139525,118139476,118139477,50,-,CGGTGACTAAGGGTGATGCAAAACTCACTAAATTATTATAGATACTGAAA,3' UTR,7,118131308,118243637,112330,2,Smg1-201,104112,Smg1-201;Smg1-204;Smg1-207;Smg1-202,Smg1;Smg1;Smg1;Smg1,0;0;0;2274,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,7,9,233789,ENSMUSG00000030655,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24392,cg12971545,-0.00000174,0.0000052,-0.335092832,0.737781694,loss,ns,-0.00000617,0.00000883,-0.69882254,0.48518688,neg,ns,-0.001228639,0.002586609,-0.47499971,0.635121654,neg,ns,0.19714308,0.0000341,0.000089,0.383381883,0.701699414,pos,ns,0.873017708,Chd4,Chd4_Exon,6,125120480,125120529,125120480,125120481,50,+,CGACCAGTCCGACAACCAGTCCGATTACTCAGTGGCTTCAGAGGAAGGTG,"Exon (Chd4-203/Chd4, exon 27 of 39)",6,125095981,125130585,34605,1,Chd4-203,24499,Chd4-203;Chd4-201;Chd4-202;Chd4-204;Chd4-205,Chd4;Chd4;Chd4;Chd4;Chd4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,15,107932,ENSMUSG00000063870,conserved gene but different region,6,125120280,125120502,223,*,223,12,0.596412556,0.612918003,0.053811659,0.00000182,CpGisland,TRUE,U10,Tr-S
7595,cg17260978,0.00000183,0.00000403,0.453662493,0.650389184,gain,ns,-0.00000479,0.00000685,-0.698637994,0.485302071,neg,ns,0.01412512,0.002007875,7.034858935,1.28E-11,pos,yes,10.89207715,-0.000185457,0.0000691,-2.685808548,0.007625215,neg,ns,0.936600987,Zbtb20,Zbtb20_Intron,16,43371444,43371493,43371444,43371445,50,+,CGTCTGTGTTCACTGAAACATGGCTATCAAGTGCACCTCGAGTCATTAGA,"Intron (Zbtb20-209/Zbtb20, intron 7 of 7)",16,42875881,43463175,587295,1,Zbtb20-209,495563,Zbtb20-209;Zbtb20-211;Zbtb20-217;Zbtb20-218;Zbtb20-204;Zbtb20-215;Zbtb20-201;Zbtb20-203;Zbtb20-214;Zbtb20-213;Zbtb20-219;Zbtb20-216,Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,98,56490,ENSMUSG00000022708,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6419,cg15235378,-0.00001,0.00000934,-1.071407023,0.284819866,loss,ns,0.0000111,0.0000159,0.698567914,0.485345818,pos,ns,0.012980117,0.004648227,2.792487746,0.005555416,pos,ns,2.255283376,-0.000666714,0.000159852,-4.170814274,0.0000394,neg,ns,0.736126386,Gm37013,Gm37013_Exon,18,37185101,37185150,37185101,37185102,50,+,CGGCAGGAGCCTACTAACAGCCAAATTGACAAAAGTGACTTCATAACCTT,"Exon (Pcdha1-201/Pcdha1, exon 4 of 4)",18,36969916,37833296,863381,1,Gm37013-201,215185,Gm37013-201;Gm37388-201;Gm42416-201;Pcdha1-202;Pcdha1-201;Pcdha11-201;Pcdha11-202;Pcdha11-203;Pcdha11-204;Pcdha12-201;Pcdha2-201;Pcdha2-202;Pcdha3-201;Pcdha4-202;Pcdha4-201;Pcdha5-201;Pcdha6-202;Pcdha6-201;Pcdha6-203;Pcdha7-201;Pcdha8-201;Pcdha9-201;Pcdhac1-201;Pcdhac2-201,Gm37013;Gm37388;Gm42416;Pcdha1;Pcdha1;Pcdha11;Pcdha11;Pcdha11;Pcdha11;Pcdha12;Pcdha2;Pcdha2;Pcdha3;Pcdha4;Pcdha4;Pcdha5;Pcdha6;Pcdha6;Pcdha6;Pcdha7;Pcdha8;Pcdha9;Pcdhac1;Pcdhac2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,14,100384868,ENSMUSG00000103458,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10347,cg23091488,-0.0000105,0.00000431,-2.447385613,0.014944321,loss,ns,-0.00000511,0.00000732,-0.698562944,0.485348921,neg,ns,-0.002454997,0.00214483,-1.1446118,0.253252974,neg,ns,0.596445446,-0.000092,0.0000738,-1.247407657,0.213189581,neg,ns,0.812758911,Fmnl2,Fmnl2_Exon,2,53130454,53130503,53130454,53130455,50,-,CGAGGGTAAGGATTTCTTCTAGCACACCGGTGGTGGAGGATACACAGAGC,"Exon (Fmnl2-201/Fmnl2, exon 26 of 27)",2,52857860,53132203,274344,1,Fmnl2-205,272594,Fmnl2-205;Fmnl2-201;Fmnl2-203;Fmnl2-204;Fmnl2-202;Prpf40a-201,Fmnl2;Fmnl2;Fmnl2;Fmnl2;Fmnl2;Prpf40a,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,71409,ENSMUSG00000036053,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21940,cg13084522,-0.00000265,0.00000184,-1.435420741,0.152175429,loss,ns,-0.00000219,0.00000313,-0.698360071,0.485475575,neg,ns,0.000763085,0.000918058,0.831194805,0.406503334,pos,ns,0.390935888,-0.0000312,0.0000316,-0.986648036,0.324584657,neg,ns,0.082389324,Ap1g1,Ap1g1_fiveUTR,8,109778873,109778922,109778873,109778874,50,+,CGAGGGAGCCGCCATTTTGGATGTTCGGTTCCTGCTGCCACTGCTGCCGC,Promoter (<=1kb),8,109778897,109805668,26772,1,Ap1g1-204,0,Ap1g1-202;Ap1g1-204;Ap1g1-201,Ap1g1;Ap1g1;Ap1g1,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,16,11765,ENSMUSG00000031731,conserved gene and region,8,109778360,109779060,701,*,701,74,0.687589158,0.89437931,0.105563481,3.73E-58,CpGisland,TRUE,U1,Pr-A
8505,cg14215583,-0.0000031,0.00000492,-0.629704968,0.529351455,loss,ns,0.00000584,0.00000836,0.698213433,0.485567133,pos,ns,0.001743186,0.002450471,0.7113678,0.477391275,pos,ns,0.321125523,0.0000141,0.0000843,0.166763178,0.867665114,pos,ns,0.053886026,Lbx1,Lbx1_Promoter,19,45244367,45244416,45244415,45244416,50,-,ATATATTCATCTTTATTATACCAAATCTGTGTGAAGCATTTAATAAAACG,Promoter (8-9kb),19,45232684,45235812,3129,2,Lbx1-201,-8604,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,50,16814,ENSMUSG00000025216,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
18137,cg24305264,0.0000862,0.0000167,5.162502702,0.000000436,gain,yes,-0.0000198,0.0000284,-0.698211194,0.485568531,neg,ns,0.02358513,0.008311601,2.837615899,0.004844791,pos,ns,2.314724962,-0.000831935,0.000285835,-2.910539109,0.003869374,neg,ns,0.390282765,Tob1,Tob1_Exon,11,94213709,94213758,94213709,94213710,50,-,CGTGTCAACATTTTTGGTGAAGAACTTGAAAGACTTCTTAAGAAGAAATA,"Exon (Tob1-201/Tob1, exon 2 of 2)",11,94211454,94215495,4042,1,Tob1-201,2255,Tob1-201,Tob1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,3,22057,ENSMUSG00000037573,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20833,cg17687367,-0.0000406,0.000006,-6.771085847,6.41E-11,loss,yes,-0.00000712,0.0000102,-0.698207773,0.485570667,neg,ns,-0.010616951,0.002985901,-3.555693937,0.00043581,neg,ns,3.360702477,0.0000505,0.000102685,0.491875029,0.623155806,pos,ns,0.906051267,Ndfip2,Ndfip2_Intergenic_downstream,14,105588757,105588806,105588805,105588806,50,+,TTGATTCTTAATAAGTGACTTCCTAAAGCTGAGGCATGGGGCTTACAGCG,Distal Intergenic,14,105294546,105308869,14324,1,Ndfip2-203,294211,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,7,76273,ENSMUSG00000053253,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9377,cg00261096,-0.00000048,0.00000405,-0.118566987,0.905695213,loss,ns,0.0000048,0.00000688,0.698104,0.485635467,pos,ns,0.004665555,0.002014925,2.3154982,0.021238187,pos,ns,1.672882567,-0.000165951,0.0000693,-2.394918254,0.017217431,neg,ns,0.92718702,Tex10,Tex10_Exon,4,48468479,48468528,48468527,48468528,50,-,CTGAGTCTCACTAAGACTTTCAGCCTCCATTGCTGAGAAGTGAGTCTCCG,Promoter (<=1kb),4,48430858,48468924,38067,2,Tex10-205,396,Tex10-205;Tex10-201;Tex10-206;Tex10-204;Tex10-202,Tex10;Tex10;Tex10;Tex10;Tex10,0;0;0;0;4815,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,269536,ENSMUSG00000028345,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13787,cg08772487,0.00000255,0.00000512,0.498424588,0.618538253,gain,ns,0.00000608,0.00000871,0.697967676,0.4857206,pos,ns,0.004021572,0.002550345,1.576873368,0.115844556,pos,ns,0.936124372,-0.00017679,0.0000877,-2.015708476,0.044693019,neg,ns,0.923338776,Rfx7,Rfx7_threeUTR,9,72619936,72619985,72619984,72619985,50,-,TGTATCTAAAGACATATGTATTGTATTTGTCTTAATGGAAGTGCCTCCCG,3' UTR,9,72532240,72622829,90590,1,Rfx7-202,87696,Rfx7-202;Rfx7-201,Rfx7;Rfx7,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,8,319758,ENSMUSG00000037674,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17670,cg01753578,-0.00000191,0.00000106,-1.793876936,0.073807244,loss,ns,-0.00000126,0.0000018,-0.697770967,0.485843457,neg,ns,0.00047739,0.000528619,0.903088961,0.367179876,pos,ns,0.43512113,-0.00000742,0.0000182,-0.408418377,0.683248511,neg,ns,0.032928549,Ssbp2,Ssbp2_Exon,13,91370948,91370997,91370996,91370997,50,-,TGTGTCAGCACAACTTCCGGGATAATGAGAGCTGCTTTGCAGGGAGCGCG,"Exon (A830009L08Rik-201/A830009L08Rik-201, exon 3 of 3)",13,91460283,91688866,228584,1,Ssbp2-209,-89335,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,18,66970,ENSMUSG00000003992,conserved gene and region,13,91370942,91371164,223,*,223,20,0.6367713,0.906504065,0.089686099,1.36E-14,CpGisland,TRUE,U1,Pr-A
24979,cg03603034,0.00000442,0.00000264,1.672600918,0.095414753,gain,ns,0.00000313,0.00000449,0.697723326,0.485873215,pos,ns,-0.0000512,0.001315073,-0.038949689,0.968955572,neg,ns,0.013696136,-0.00000158,0.0000452,-0.035022645,0.972084224,neg,ns,0.94356335,Pum1,Pum1_threeUTR,4,130781371,130781420,130781371,130781372,50,-,CGGTGTACATTTCCAGAGCCTTGTGTATATTTCCAATGAACTTTTTTGCA,3' UTR,4,130663321,130781564,118244,1,Pum1-201,118050,Pum1-201;Pum1-204;Pum1-205;Pum1-203;Pum1-202,Pum1;Pum1;Pum1;Pum1;Pum1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,8,80912,ENSMUSG00000028580,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17081,cg22596191,-0.000000453,0.00000231,-0.1960419,0.844705816,loss,ns,-0.00000274,0.00000392,-0.697498024,0.486013956,neg,ns,-0.00175045,0.001149826,-1.522360978,0.128938043,neg,ns,0.889618925,0.0000746,0.0000395,1.885579604,0.060286529,pos,ns,0.954248791,Eefsec,Eefsec_Intron,6,88313863,88313912,88313863,88313864,50,-,CGTGGCTGAACTAATTATTCCTGTATGTTGTTTAATGAAATAGTGGTGCC,"Intron (Eefsec-201/Eefsec, intron 4 of 6)",6,88257334,88446539,189206,2,Eefsec-201,132627,Eefsec-201;Eefsec-206;Eefsec-202;Eefsec-204;Eefsec-203;Eefsec-205,Eefsec;Eefsec;Eefsec;Eefsec;Eefsec;Eefsec,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,65967,ENSMUSG00000033216,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7241,cg12698792,0.00000488,0.00000386,1.264937186,0.2068439,gain,ns,-0.00000457,0.00000655,-0.697469236,0.486031941,neg,ns,-0.001018498,0.001919725,-0.530543682,0.596114874,neg,ns,0.224670041,0.0000748,0.000066,1.133620144,0.257829834,pos,ns,0.912177448,Arid3c,Arid3c_Exon,4,41728066,41728115,41728114,41728115,50,+,TGAAGCTAAACAGGTCATCCAGAAATTCCTTCCTCTTGGGGTCTGCATCG,"Exon (Arid3c-203/Arid3c, exon 3 of 8)",4,41723836,41731142,7307,2,Arid3c-203,3027,Arid3c-203;Arid3c-201;Arid3c-202;Dctn3-203;Dctn3-201;Dctn3-202;Il11ra1-203,Arid3c;Arid3c;Arid3c;Dctn3;Dctn3;Dctn3;Il11ra1,0;0;0;-4903;-4896;-4929;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,2,550619,ENSMUSG00000066224,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
9410,cg24279288,-0.000000238,0.00000699,-0.033985471,0.972910608,loss,ns,-0.00000828,0.0000119,-0.697462837,0.486035938,neg,ns,-0.00198609,0.003478447,-0.570970304,0.568433442,neg,ns,0.245320379,0.000139884,0.000119624,1.169372268,0.243152013,pos,ns,0.121971498,Otx2,Otx2_Intron,14,48669962,48670011,48670010,48670011,50,+,TTCTCATCCACTTCAGATGTCTAAAGTAAGATTGTGATGATTTTGTCACG,"Intron (Otx2os1-207/Otx2os1-207, intron 1 of 2)",14,48657851,48673819,15969,2,Otx2-210,3808,Otx2-209;Otx2-201;Otx2-210;Otx2-202;Otx2-208;Otx2-207;Otx2-205;Otx2-203;Otx2-211,Otx2;Otx2;Otx2;Otx2;Otx2;Otx2;Otx2;Otx2;Otx2,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,15,18424,ENSMUSG00000021848,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
24601,cg25098197,0.0000216,0.00000312,6.922821592,2.55E-11,gain,yes,-0.0000037,0.0000053,-0.697271519,0.48615547,neg,ns,0.003280612,0.001553851,2.111278285,0.035548595,pos,ns,1.449177562,0.0000243,0.0000534,0.45381023,0.650282955,pos,ns,0.073418589,Ccnd2,Ccnd2_Promoter,6,127152576,127152625,127152624,127152625,50,+,CCCCTCCCTCTATTTGCATAGCCAATAGCTCTGGGGCTCCTGCTACTGCG,Promoter (<=1kb),6,127146023,127152193,6171,2,Ccnd2-206,-383,Ccnd2-201;Ccnd2-206;Ccnd2-208;Ccnd2-202;Ccnd2-204;Ccnd2-205,Ccnd2;Ccnd2;Ccnd2;Ccnd2;Ccnd2;Ccnd2,-1516;0;-1569;-1543;-1569;-1615,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,4,4,12444,ENSMUSG00000000184,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
22781,cg02320179,0.0000382,0.00000553,6.914671904,2.68E-11,gain,yes,0.00000655,0.00000939,0.697262238,0.486161269,pos,ns,0.004540897,0.002751691,1.650220471,0.099910624,pos,ns,1.000388327,0.0000758,0.0000946,0.800492272,0.424038677,pos,ns,0.076771811,Dmbx1,Dmbx1_Promoter,4,115944234,115944283,115944234,115944235,50,-,CGCGCTGACAAGACTAACAAAGCAATTTGCCACGAGCCATCTCCTGGACA,Promoter (4-5kb),4,115915119,115939926,24808,2,Dmbx1-203,-4357,Dmbx1-203;Dmbx1-202,Dmbx1;Dmbx1,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,9,42,140477,ENSMUSG00000028707,conserved gene but different region,4,115943986,115944303,318,*,318,35,0.694968554,0.925340871,0.110062893,1.76E-28,CpGisland,TRUE,U13,Hc-P
7053,cg00143077,-0.0000147,0.0000129,-1.138615045,0.25574289,loss,ns,0.0000153,0.0000219,0.697122619,0.486248511,pos,ns,-0.006672777,0.00642434,-1.038671208,0.299767129,neg,ns,0.523215992,0.000128981,0.000220933,0.583801732,0.559778245,pos,ns,0.627692912,Tfap2a,Tfap2a_Intron,13,40720823,40720872,40720871,40720872,50,+,CAGGACGCAGGTCAAAGATTCCCAAATTAATTCAGGAAGTAATGGTCACG,"Intron (Tfap2a-201/Tfap2a, intron 5 of 6)",13,40715302,40730443,15142,2,Tfap2a-201,9571,Tfap2a-201;Tfap2a-202;Tfap2a-205;Tfap2a-203;Tfap2a-209;Tfap2a-208;Tfap2a-206;Tfap2a-204;Tfap2a-207,Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,57,21418,ENSMUSG00000021359,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
14031,cg10133293,0.0000108,0.0000115,0.938736139,0.348597056,gain,ns,0.0000136,0.0000196,0.696997463,0.486326723,pos,ns,-0.000577862,0.005727727,-0.100888617,0.919704098,neg,ns,0.036351878,0.0000311,0.000196976,0.15767475,0.874815751,pos,ns,0.721725844,Lnpk,Lnpk_Intergenic_downstream,2,74298635,74298684,74298683,74298684,50,+,TGTTGATGCTTCACAGACCTCATGATAGTTTCCGTCTGTCATTATTTACG,Distal Intergenic,2,74520341,74533106,12766,2,Lnpk-204,234422,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,15,16,69605,ENSMUSG00000009207,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20489,cg09728102,0.000033,0.00000434,7.613577218,3.24E-13,gain,yes,-0.00000514,0.00000737,-0.696995216,0.486328128,neg,ns,0.006130686,0.002158391,2.840396368,0.004803836,pos,ns,2.318411808,-0.000151189,0.0000742,-2.036848193,0.042514581,neg,ns,0.061755414,Mast4,Mast4_Intron,13,103096918,103096967,103096966,103096967,50,+,AGTCAGCTGGTCCAGCTTAGTTATTCACTCCAGCAACTTCGGAGATCACG,"Intron (Mast4-205/Mast4, intron 3 of 26)",13,102732486,103334192,601707,2,Mast4-205,237225,Mast4-205;Mast4-220;Mast4-207;Mast4-218;Mast4-204;Mast4-202;Mast4-210;Mast4-211;Mast4-209;Mast4-214,Mast4;Mast4;Mast4;Mast4;Mast4;Mast4;Mast4;Mast4;Mast4;Mast4,0;0;0;0;0;0;0;0;0;-74,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,8,328329,ENSMUSG00000034751,conserved gene and region,13,103096957,103097088,132,*,132,14,0.606060606,1.155722327,0.106060606,2.31E-11,CpGisland,TRUE,U3,Pr-B
5054,cg07392244,-0.0000042,0.00000316,-1.328250086,0.185072541,loss,ns,0.00000374,0.00000537,0.696955789,0.486352768,pos,ns,0.001565306,0.001573638,0.994705122,0.320655485,pos,ns,0.493961327,-0.000082,0.0000541,-1.514421778,0.130937794,neg,ns,0.92401243,Nsg2,Nsg2_threeUTR,11,32059087,32059136,32059087,32059088,50,+,CGCTTTATAATTTTGTGGTGTATTTTTGTCAGTAGGTAGCAGAGGCGGAA,3' UTR,11,32000463,32059202,58740,1,Nsg2-201,58624,Nsg2-201,Nsg2,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,2,18197,ENSMUSG00000020297,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17506,cg03329947,-0.0000312,0.0000086,-3.625492938,0.000337029,loss,ns,0.0000102,0.0000146,0.69669367,0.486516598,pos,ns,0.00872145,0.004281036,2.03722905,0.042476176,pos,ns,1.371854584,-0.000299413,0.000147224,-2.033716276,0.042831516,neg,ns,0.23585677,Anks1b,Anks1b_fiveUTR,10,90576980,90577029,90577028,90577029,50,+,TTTCCCAGGGGCATGATGTGGCAATGCCACCTCTCAGCCCAGGACTACCG,Promoter (<=1kb),10,90576992,90969820,392829,1,Anks1b-201,0,Anks1b-233;Anks1b-222;Anks1b-203;Anks1b-214;Anks1b-215;Anks1b-208;Anks1b-210;Anks1b-221;Anks1b-219;Anks1b-213;Anks1b-216;Anks1b-224;Anks1b-206;Anks1b-207;Anks1b-209;Anks1b-231;Anks1b-218;Anks1b-217;Anks1b-201,Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,9,14,77531,ENSMUSG00000058589,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15794,cg05147550,-0.0000153,0.00000863,-1.774951945,0.076887035,loss,ns,0.0000102,0.0000147,0.696658393,0.486538648,pos,ns,-0.00958918,0.004293091,-2.233630719,0.026220503,neg,ns,1.581358979,-0.0000995,0.000147639,-0.674140267,0.500724516,neg,ns,0.722168941,Mef2c,Mef2c_Intergenic_upstream,13,83484902,83484951,83484902,83484903,50,+,CGTGTTATTGCGCATTTCTGGGCTGAAAAGATATGGCTTGATGGGTAATT,Distal Intergenic,13,83504034,83663343,159310,1,Mef2c-218,-19083,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,41,17260,ENSMUSG00000005583,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6129,cg12131127,-0.00000272,0.00000121,-2.251953799,0.025024842,loss,ns,-0.00000143,0.00000205,-0.696616438,0.486564874,neg,ns,-0.000330893,0.000600919,-0.550644251,0.582274151,neg,ns,0.234872489,-0.000000528,0.0000207,-0.025546546,0.979635459,neg,ns,0.958356716,Bzw2,Bzw2_Exon,12,36123975,36124024,36124023,36124024,50,-,GAAAACACACAGTGGTTGGTCATCTTGGTCTTGTCACCATCATCTATGCG,"Exon (Bzw2-201/Bzw2, exon 4 of 12)",12,36091835,36156825,64991,2,Bzw2-201,32801,Bzw2-201;Bzw2-205;Bzw2-204;Bzw2-210;Bzw2-203;Bzw2-207;Bzw2-208;Bzw2-209,Bzw2;Bzw2;Bzw2;Bzw2;Bzw2;Bzw2;Bzw2;Bzw2,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,66912,ENSMUSG00000020547,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
653,cg22103694,-0.0000233,0.00000553,-4.202588963,0.0000346,loss,ns,0.00000655,0.0000094,0.69653761,0.486614152,pos,ns,0.008861898,0.002754094,3.217718558,0.001428839,pos,ns,2.845016821,-0.000376831,0.0000947,-3.978656898,0.0000863,neg,ns,0.798713399,Gm49533,Gm49533_Intergenic_downstream,16,7555216,7555265,7555264,7555265,50,+,CTTCCAATTGCCTTAATAGACCATAAAAATGGTAATGCCATGGTGCACCG,Distal Intergenic,16,7708736,7709066,331,2,Gm49533-201,153801,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12293,cg22619563,0.0000511,0.00000705,7.244574451,3.46E-12,gain,yes,-0.00000834,0.000012,-0.696491236,0.486643143,neg,ns,0.006816524,0.003508626,1.942790042,0.052946716,pos,ns,1.276160969,-0.00016526,0.000120661,-1.369619751,0.171796916,neg,ns,0.055503578,Epha3,Epha3_fiveUTR,16,63864115,63864164,63864115,63864116,50,+,CGCTCTGATTGCTGGAGAAGTTACCATGCTCCGCTCGCAGGCTGATGTCA,Promoter (<=1kb),16,63543534,63864158,320625,2,Epha3-201,0,Epha3-201;Epha3-203;Epha3-206;Epha3-205;Epha3-202;Epha3-204,Epha3;Epha3;Epha3;Epha3;Epha3;Epha3,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,8,13837,ENSMUSG00000052504,conserved gene and region,16,63863867,63864151,285,*,285,21,0.631578947,0.757211539,0.073684211,1.58E-13,CpGisland,TRUE,NA,NRS
23436,cg14190856,0.0000613,0.00000979,6.261121647,1.27E-09,gain,yes,-0.0000116,0.0000166,-0.696361391,0.486724321,neg,ns,0.012259524,0.004873977,2.515301858,0.012398516,pos,ns,1.906630301,-0.000349815,0.000167616,-2.087006294,0.037704181,neg,ns,0.072315924,Dpyd,Dpyd_Exon,3,118433841,118433890,118433889,118433890,50,+,TTGGTCCTCTGACTCTCTTCGGTGACGGGTATTCTTGGGTGGATAATACG,"Exon (Gm26871-202/Gm26871-202, exon 3 of 3)",3,118562129,119432924,870796,1,Dpyd-201,-128239,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,29,99586,ENSMUSG00000033308,mapped to different genes,3,118433691,118434190,500,*,500,37,0.624,0.795801609,0.074,1.85E-23,CpGisland,TRUE,U3,Pr-B
6461,cg20847868,-0.000015,0.00000415,-3.608253809,0.000359253,loss,ns,-0.00000491,0.00000705,-0.696319475,0.486750529,neg,ns,-0.00153869,0.00206551,-0.744944531,0.456869635,neg,ns,0.340207705,0.0000687,0.000071,0.966796192,0.334399556,pos,ns,0.86354746,Inpp4a,Inpp4a_fiveUTR,1,37357895,37357944,37357943,37357944,50,+,AAGCACATCATCACCAATGACATCATGACAGCAAGAGAGCACAGCCCTCG,Promoter (<=1kb),1,37357919,37408259,50341,1,Inpp4a-208,0,Inpp4a-201;Inpp4a-209;Inpp4a-205;Inpp4a-207;Inpp4a-206;Inpp4a-213;Inpp4a-208,Inpp4a;Inpp4a;Inpp4a;Inpp4a;Inpp4a;Inpp4a;Inpp4a,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,9,269180,ENSMUSG00000026113,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27838,cg26578629,0.000000722,0.00000381,0.189234757,0.850032662,gain,ns,0.00000451,0.00000648,0.696252488,0.486792412,pos,ns,0.002452114,0.001897661,1.292177227,0.197258189,pos,ns,0.704964959,-0.000100264,0.0000653,-1.536372226,0.125467109,neg,ns,0.923364299,Esrrg,Esrrg_Intron,1,188186976,188187025,188187024,188187025,50,-,TTAATCTCCACTATGGCATCATCCTAATGTATGCAATTAAGAGTCTGCCG,"Intron (Esrrg-203/Esrrg, intron 6 of 7)",1,187609029,188214386,605358,1,Esrrg-203,577947,Esrrg-203;Esrrg-201;Esrrg-202,Esrrg;Esrrg;Esrrg,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,60,26381,ENSMUSG00000026610,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13160,cg04112554,-0.00000252,0.00000144,-1.750976304,0.080939073,loss,ns,0.0000017,0.00000245,0.696247608,0.486795463,pos,ns,0.001682452,0.000716334,2.348698384,0.019466914,pos,ns,1.710702891,-0.0000601,0.0000246,-2.439902344,0.015251365,neg,ns,0.061857599,Tcf4,Tcf4_fiveUTR,18,69593408,69593457,69593408,69593409,50,-,CGGCCATATGGGAAAATGCAACTGAAGGAATTGTTGTGAAAAAAGGGACA,Promoter (<=1kb),18,69593413,69675730,82318,1,Tcf4-222,0,Tcf4-201;Tcf4-207;Tcf4-240;Tcf4-254;Tcf4-246;Tcf4-206;Tcf4-202;Tcf4-257;Tcf4-232;Tcf4-248;Tcf4-231;Tcf4-205;Tcf4-253;Tcf4-238;Tcf4-249;Tcf4-219;Tcf4-227;Tcf4-250;Tcf4-229;Tcf4-260;Tcf4-226;Tcf4-216;Tcf4-256;Tcf4-230;Tcf4-221;Tcf4-234;Tcf4-258;Tcf4-217;Tcf4-247;Tcf4-252;Tcf4-218;Tcf4-243;Tcf4-237;Tcf4-239;Tcf4-262;Tcf4-223;Tcf4-212;Tcf4-204;Tcf4-225;Tcf4-222;Tcf4-261;Tcf4-255;Tcf4-203;Tcf4-241;Tcf4-236;Tcf4-228;Tcf4-220;Tcf4-242,Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,12,66,21413,ENSMUSG00000053477,conserved gene and region,18,69593178,69593409,232,*,232,20,0.599137931,0.96305521,0.086206897,3.01E-14,CpGisland,TRUE,U1,Pr-A
16068,cg18136650,0.00000748,0.00000611,1.224625654,0.22164607,gain,ns,0.00000723,0.0000104,0.696208769,0.486819749,pos,ns,0.001906008,0.003041373,0.626693052,0.531321686,pos,ns,0.274642458,0.0000024,0.000104593,0.022981362,0.981679925,pos,ns,0.876991065,Acaca,Acaca_Intron,11,84349915,84349964,84349915,84349916,50,-,CGAGGTTGTTATTTGCATAGAAATAGCATGGAGCCCCAGGCAGCAAGGGA,"Intron (Acaca-202/Acaca, intron 45 of 55)",11,84173122,84401651,228530,1,Acaca-202,176793,Acaca-202;Acaca-201,Acaca;Acaca,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,28,28,107476,ENSMUSG00000020532,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22759,cg08280082,-0.0000168,0.00000673,-2.495767033,0.013087985,loss,ns,0.00000796,0.0000114,0.696106181,0.486883898,pos,ns,-0.007259704,0.003351155,-2.166328959,0.031047835,neg,ns,1.507968684,0.000139737,0.000115246,1.212510596,0.226240219,pos,ns,0.801675523,Dmbx1,Dmbx1_Exon,4,115920679,115920728,115920727,115920728,50,-,GCTGGGAACCATAACGGGCCTCCAAGATGATGTCTTGAAATGTACAGCCG,"Exon (Dmbx1-201/Dmbx1, exon 2 of 4)",4,115915119,115925638,10520,2,Dmbx1-201,4910,Dmbx1-201;Dmbx1-203;Dmbx1-202,Dmbx1;Dmbx1;Dmbx1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,42,140477,ENSMUSG00000028707,conserved gene but different region,4,115920644,115920728,85,*,85,9,0.576470588,1.287878788,0.105882353,0.000000223,CpGisland,TRUE,U11,Tr-P
27180,cg27574292,0.0000111,0.0000039,2.849439988,0.004672797,gain,ns,-0.00000462,0.00000663,-0.695962005,0.486974061,neg,ns,0.000626749,0.001943141,0.322544377,0.747257749,pos,ns,0.126529573,-0.0000741,0.0000668,-1.108964024,0.268305276,neg,ns,0.019718796,Mafb,Mafb_Exon,2,160365725,160365774,160365773,160365774,50,+,AGGAGGGGCTGTCGCTGGTGGAGCCCGCCTCCCTGAAGCCGGAGTTGGCG,"Exon (Mafb-201/Mafb, exon 1 of 1)",2,160363703,160367065,3363,2,Mafb-201,1291,Mafb-201,Mafb,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,14,22,16658,ENSMUSG00000074622,conserved gene and region,2,160365737,160365821,85,*,85,9,0.670588235,0.942118227,0.105882353,0.000000223,CpGisland,TRUE,U3,Pr-B
14443,cg20785522,-0.0000485,0.00001,-4.847336335,0.00000198,loss,ns,0.0000118,0.000017,0.69574022,0.487112775,pos,ns,0.01738687,0.004975602,3.494425168,0.000544306,pos,ns,3.264156594,-0.000898013,0.000171111,-5.248144299,0.000000286,neg,yes,0.796477885,Gm11256,Gm11256_Intergenic_upstream,4,75701003,75701052,75701051,75701052,50,+,CATTTCTGACTCCATTAATATGGAAGATTTCAGCCAAATGCTCTTAAACG,Distal Intergenic,4,75854518,75855346,829,1,Gm11256-201,-153466,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,100039884,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19461,cg08955338,-0.00000747,0.00000245,-3.05206736,0.002469373,loss,ns,-0.00000289,0.00000416,-0.695472345,0.487280344,neg,ns,-0.000436382,0.001218234,-0.358208366,0.720431182,neg,ns,0.142407498,-0.0000212,0.0000419,-0.5053678,0.613659643,neg,ns,0.962742431,Gm12685,Gm12685_Intergenic_downstream,4,99374768,99374817,99374816,99374817,50,+,TATACATGTTCAAATAATTGCTCATCCTAATGTGCAGTGATCTGTATTCG,Distal Intergenic,4,99418498,99418711,214,2,Gm12685-201,43894,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,13,13,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7100,cg07053122,-0.0000155,0.0000046,-3.363268752,0.000866898,loss,ns,-0.00000543,0.00000781,-0.695345688,0.487359586,neg,ns,-0.006732677,0.00228752,-2.943221164,0.003493416,neg,ns,2.456749666,0.000131379,0.0000787,1.670045749,0.095919665,pos,ns,0.897664921,Gm5973,Gm5973_Intergenic_upstream,1,40967435,40967484,40967483,40967484,50,-,GCTGTAAAGTTCTATTCCTCACAAAGGCAAGATATATTATTGCTGTAACG,Distal Intergenic,1,40863737,40864232,496,2,Gm5973-201,-103252,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,18,18,546733,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20702,cg00401084,-0.000013,0.00000693,-1.881922394,0.060783229,loss,ns,0.00000819,0.0000118,0.695326964,0.4873713,pos,ns,-0.004438039,0.003448984,-1.286767117,0.199135518,neg,ns,0.700851272,0.000217331,0.00011861,1.832315264,0.067863628,pos,ns,0.82953555,Cntn6,Cntn6_fiveUTR,6,104493064,104493113,104493064,104493065,50,-,CGTATTTCATGCTTAAGACCAGAGAAGAGCCACGCAATACTCAGTGGATA,Promoter (<=1kb),6,104492790,104642949,150160,1,Cntn6-204,274,Cntn6-204;Cntn6-202;Cntn6-201;Cntn6-203;Cntn6-205,Cntn6;Cntn6;Cntn6;Cntn6;Cntn6,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,4,53870,ENSMUSG00000030092,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21636,cg13965682,0.00000477,0.0000025,1.910143176,0.057037362,gain,ns,0.00000295,0.00000425,0.695293527,0.487392221,pos,ns,0.001435957,0.001243888,1.154410559,0.24922103,pos,ns,0.603415313,-0.0000385,0.0000428,-0.899616875,0.369022446,neg,ns,0.040370343,Zfhx3,Zfhx3_fiveUTR,8,108703603,108703652,108703651,108703652,50,+,TTTGCTGAATCTTATTGATCCAGAAGGTGGCTAATTAGCCCTTCCCGTCG,5' UTR,8,107942644,108961630,1018987,1,Zfhx3-204,760959,Zfhx3-204;Zfhx3-202,Zfhx3;Zfhx3,0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,11,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
22484,cg15915304,0.000011,0.00000339,3.234842506,0.0013485,gain,ns,0.00000401,0.00000577,0.695230445,0.487431692,pos,ns,0.004874328,0.001689496,2.88507753,0.004187475,pos,ns,2.378047741,-0.000131015,0.0000581,-2.254927965,0.024835308,neg,ns,0.077379487,Gm12830,Gm12830_Exon,4,114821910,114821959,114821910,114821911,50,-,CGTGAGGTAATGAAATATGGAAGCGGTGAGATATGTAATGCTTTATTAAG,Promoter (<=1kb),4,114821722,114856166,34445,1,Gm12830-201,188,Gm12830-201,Gm12830,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,26,433746,ENSMUSG00000055198,mapped to different genes,4,114821908,114822167,260,*,260,26,0.676923077,0.936936937,0.1,4.14E-20,CpGisland,TRUE,U3,Pr-B
6360,cg22108998,-0.00000257,0.00000566,-0.453854637,0.650251025,loss,ns,-0.00000668,0.00000962,-0.694992686,0.487580473,neg,ns,-0.002684117,0.002817353,-0.952708798,0.341479875,neg,ns,0.466634886,0.000122843,0.0000969,1.267880885,0.205791934,pos,ns,0.812315779,Dgki,Dgki_Exon,6,36994841,36994890,36994889,36994890,50,+,GAATGGCACTGTACTCACATGGTGAAGGAGCCGGGGGGAGCAGACACTCG,"Exon (Dgki-203/Dgki, exon 21 of 34)",6,36846022,37299974,453953,2,Dgki-203,305084,Dgki-203;Dgki-202;Dgki-205;Dgki-208;Dgki-201;Dgki-206,Dgki;Dgki;Dgki;Dgki;Dgki;Dgki,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,7,320127,ENSMUSG00000038665,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6502,cg10570730,0.00000175,0.00000832,0.210874345,0.833123872,gain,ns,0.00000982,0.0000141,0.694897241,0.487640207,pos,ns,0.00026987,0.004140733,0.065174443,0.948077118,pos,ns,0.023156335,-0.000117297,0.000142399,-0.823718018,0.410733059,neg,ns,0.802699463,Zfp536,Zfp536_Intron,7,37532840,37532889,37532840,37532841,50,+,CGCTGCAGACCCACTCATTGAGTAAGAGCCAACAGCATATGATTGTGTTA,"Intron (Zfp536-211/Zfp536, intron 1 of 3)",7,37318024,37568390,250367,2,Zfp536-211,35501,Zfp536-211;Zfp536-202;Zfp536-201;Zfp536-203;Zfp536-206,Zfp536;Zfp536;Zfp536;Zfp536;Zfp536,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,73,112,243937,ENSMUSG00000043456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22692,cg14399520,-0.00000359,0.00000365,-0.984370742,0.325700903,loss,ns,0.00000431,0.0000062,0.694575138,0.48784182,pos,ns,0.001117261,0.001816491,0.615065455,0.538962721,pos,ns,0.268441273,-0.0000603,0.0000625,-0.964753277,0.335420388,neg,ns,0.935008019,BC052040,BC052040_Intron,2,115725450,115725499,115725498,115725499,50,+,AATATTTGCCTGCTGTGAGAATGCAAGATTAACATCACAACCATCACCCG,"Intron (BC052040-203/BC052040, intron 10 of 10)",2,115581716,115778768,197053,1,BC052040-203,143734,BC052040-203;BC052040-201,BC052040;BC052040,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,37,49,399568,ENSMUSG00000040282,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27344,cg02307886,-0.0000604,0.0000117,-5.180464022,0.000000399,loss,yes,0.0000138,0.0000198,0.69448922,0.487895606,pos,ns,-0.015880916,0.005803842,-2.736276508,0.00657217,neg,ns,2.182291213,0.000143419,0.000199594,0.718554397,0.472956748,pos,ns,0.600230411,Tbx19,Tbx19_Exon,1,165140223,165140272,165140223,165140224,50,-,CGAGAAAACTTGCAGATTATTGCTTGAGCTTTCTATCAAATTCACTTGGG,"Exon (Tbx19-201/Tbx19, exon 7 of 8)",1,165137855,165160773,22919,2,Tbx19-201,20501,Tbx19-201;Tbx19-204;Tbx19-203;Tbx19-202,Tbx19;Tbx19;Tbx19;Tbx19,0;0;0;9107,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,2,83993,ENSMUSG00000026572,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19002,cg04661614,0.00000129,0.00000168,0.76936485,0.442262553,gain,ns,0.00000198,0.00000286,0.694381919,0.487962783,pos,ns,0.00066163,0.000837261,0.790232086,0.429996315,pos,ns,0.366535266,-0.0000316,0.0000288,-1.096024837,0.273918633,neg,ns,0.96763579,Med1,Med1_Exon,11,98158034,98158083,98158082,98158083,50,+,GAGCATCGGGTGGTTCTTGGTGTTGCCGGCCATCGAAGAGACAGGTGGCG,"Exon (Med1-203/Med1, exon 17 of 17)",11,98152154,98193260,41107,2,Med1-202,35177,Med1-202;Med1-203;Med1-204;Med1-201;Med1-207,Med1;Med1;Med1;Med1;Med1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,13,19014,ENSMUSG00000018160,conserved gene but different region,11,98158040,98158130,91,*,91,8,0.648351648,0.912280702,0.087912088,0.0000058,CpGisland,TRUE,U10,Tr-S
6146,cg17124138,-0.0000374,0.0000217,-1.72304296,0.085877953,loss,ns,-0.0000256,0.0000369,-0.694380284,0.487963807,neg,ns,-0.008195706,0.010812434,-0.757989033,0.449033376,neg,ns,0.347721377,-0.000191419,0.000371839,-0.514790461,0.607066292,neg,ns,0.568689176,Tenm2,Tenm2_Intron,11,36152710,36152759,36152710,36152711,50,+,CGCTGACTTAAGCACGAAAGTATGGATGCTTTAATTAATCCGGGGTGAAT,"Intron (Tenm2-202/Tenm2, intron 11 of 30)",11,36006656,37235882,1229227,2,Tenm2-202,1083123,Tenm2-202;Tenm2-208;Tenm2-201;Tenm2-204;Tenm2-205,Tenm2;Tenm2;Tenm2;Tenm2;Tenm2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,47,84,23964,ENSMUSG00000049336,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23859,cg11831989,0.0000131,0.00000349,3.757209153,0.000205242,gain,ns,0.00000412,0.00000593,0.69436478,0.487973514,pos,ns,0.003200822,0.001738093,1.841571779,0.066493011,pos,ns,1.177223998,-0.000061,0.0000598,-1.020101287,0.308475855,neg,ns,0.038065044,En1,En1_Exon,1,120607108,120607157,120607108,120607109,50,+,CGGCCTGGCGCTGCACCTCATGGCCCAGGGACTGTACAACCACTCCACCA,"Exon (En1-201/En1, exon 2 of 2)",1,120602418,120607992,5575,1,En1-201,4690,En1-201,En1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,36,13798,ENSMUSG00000058665,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3833,cg10237567,-0.0000121,0.00000752,-1.61567823,0.107181123,loss,ns,0.00000887,0.0000128,0.694224294,0.488061475,pos,ns,0.005368807,0.003742305,1.434625572,0.152401853,pos,ns,0.817009754,-0.000234016,0.000128698,-1.818341754,0.069976855,neg,ns,0.85406378,Adgrb3,Adgrb3_Exon,1,25559747,25559796,25559747,25559748,50,-,CGTATTACCAGTTTGTGCCATAAATTTAGCAGCATCAGCTTGTTCCTGAG,"Exon (Adgrb3-206/Adgrb3, exon 2 of 29)",1,25067550,25826139,758590,2,Adgrb3-206,266343,Adgrb3-206;Adgrb3-205;Adgrb3-207;Adgrb3-201;Adgrb3-210,Adgrb3;Adgrb3;Adgrb3;Adgrb3;Adgrb3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,25,210933,ENSMUSG00000033569,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1036,cg19686797,-0.0000317,0.00000928,-3.412982625,0.000727923,loss,ns,-0.0000109,0.0000158,-0.694169767,0.488095618,neg,ns,0.015907969,0.004618616,3.444315454,0.000651329,pos,ns,3.186199636,-0.00071936,0.000158834,-4.529013611,0.00000846,neg,ns,0.736544569,Gm14485,Gm14485_Intergenic_upstream,X,11090445,11090494,11090445,11090446,50,+,CGGGTACCATATTTAACTGCAATCCTGGGGGGAATTTAGGTTGACAGGCT,Distal Intergenic,20,11020515,11021007,493,2,Gm14485-201,-69438,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,9,547156,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7065,cg25770163,0.0000012,0.000000906,1.329592354,0.184630162,gain,ns,-0.00000107,0.00000154,-0.694019556,0.488189682,neg,ns,0.000254649,0.000450707,0.564999851,0.5724825,pos,ns,0.242237784,-0.00000924,0.0000155,-0.596212768,0.551468189,neg,ns,0.019938232,Tfap2a,Tfap2a_Intron,13,40730696,40730745,40730744,40730745,50,+,AATGCCTGGAAATCGAGCGTGAAGCGGAGAGGCAACTCGCGCCGGAGCCG,"Intron (Gm26688-201/Gm26688-201, intron 1 of 2)",13,40715675,40733823,18149,2,Tfap2a-202,3078,Tfap2a-201;Tfap2a-202;Tfap2a-205;Tfap2a-203;Tfap2a-209;Tfap2a-208;Tfap2a-206;Tfap2a-204;Tfap2a-207,Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,57,21418,ENSMUSG00000021359,mapped to different genes,13,40730676,40730877,202,*,202,25,0.633663366,1.381668947,0.123762376,7.36E-22,CpGisland,TRUE,U3,Pr-B
2338,cg09557545,0.0000268,0.00000527,5.077808052,0.00000066,gain,yes,-0.00000621,0.00000895,-0.694001917,0.488200728,neg,ns,0.002179076,0.002623019,0.830751376,0.406753458,pos,ns,0.390668747,-0.000210231,0.0000902,-2.330585591,0.02041648,neg,ns,0.031719995,Meis1,Meis1_Promoter,11,19020589,19020638,19020637,19020638,50,+,TGGCTGCGGGGAAAATCAATTATCAAATAATCGATCAGCAGGGAGCTTCG,Promoter (1-2kb),11,18879817,19018985,139169,2,Meis1-206,-1604,Meis1-206;Meis1-202;Meis1-209;Meis1-201;Meis1-208;Meis1-207;Meis1-204;Meis1-205,Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1,0;0;0;0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,8,88,17268,ENSMUSG00000020160,mapped to different genes,11,19020431,19020675,245,*,245,17,0.587755102,0.809052059,0.069387755,1.25E-10,CpGisland,TRUE,U2,Pr-W
26684,cg14992439,0.000000688,0.0000013,0.530013249,0.596482149,gain,ns,0.00000153,0.0000022,0.693686788,0.488398099,pos,ns,-0.000242589,0.000645838,-0.375618471,0.707457449,neg,ns,0.150299676,0.0000171,0.0000222,0.769101501,0.44241863,pos,ns,0.96242954,Camta1,Camta1_threeUTR,4,151059742,151059791,151059790,151059791,50,-,TCAGGGACCCCCCATTGGGCGCCAACTACTGTGTGGAACTGCCATAAGCG,3' UTR,4,150917322,151861669,944348,2,Camta1-211,801878,Camta1-211;Camta1-202;Camta1-207;Camta1-201;Camta1-204;Camta1-203;Vamp3-201;Vamp3-203;Vamp3-202,Camta1;Camta1;Camta1;Camta1;Camta1;Camta1;Vamp3;Vamp3;Vamp3,0;0;0;0;0;0;-1789;-1796;-1779,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,22,100072,ENSMUSG00000014592,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7301,cg26859376,0.0000369,0.00000825,4.475202445,0.0000107,gain,ns,-0.00000972,0.000014,-0.693626184,0.488436062,neg,ns,0.001718554,0.004104335,0.418716926,0.675712974,pos,ns,0.170237743,0.0000528,0.000141148,0.373889948,0.708741781,pos,ns,0.7465925,Gm8176,Gm8176_Intergenic_upstream,1,42233297,42233346,42233345,42233346,50,-,AGTTGACAGTCAGATTCTGTGGTAAATGATTCCAGAGTCGCTGGCCTGCG,Distal Intergenic,1,42179290,42180388,1099,2,Gm8176-201,-52958,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,13,17,666582,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11704,cg05272217,0.0000204,0.0000101,2.030420565,0.043167191,gain,ns,-0.0000119,0.0000171,-0.693618007,0.488441183,neg,ns,0.004635741,0.005006174,0.926004783,0.355163813,pos,ns,0.44957129,-0.000111547,0.000172162,-0.647916311,0.517518652,neg,ns,0.639921671,Gm50296,Gm50296_Intron,19,60148928,60148977,60148976,60148977,50,+,TGTATATGGTTCTATTACTACCACTTATTGTGACGATTCCAGCAATTCCG,"Intron (E330013P04Rik-201/E330013P04Rik-201, intron 1 of 4)",19,60093460,60093931,472,2,Gm50296-201,-54997,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21236,cg09036505,-0.00000537,0.00000144,-3.730642913,0.000227096,loss,ns,0.0000017,0.00000245,0.693531556,0.488495339,pos,ns,0.000303521,0.000716807,0.423435035,0.672271511,pos,ns,0.172455292,-0.0000457,0.0000247,-1.853934854,0.064698216,neg,ns,0.034493124,Ssbp3,Ssbp3_Promoter,4,106910917,106910966,106910917,106910918,50,+,CGCGGCTCCACTTTGGGGTTTTCCAAAGTATTTTAATGATCTAGTAAAGG,Promoter (<=1kb),4,106910701,107031069,120369,1,Ssbp3-216,216,Ssbp3-216;Ssbp3-201;Ssbp3-215;Ssbp3-202;Ssbp3-203;Ssbp3-207;Ssbp3-213,Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,2,18,72475,ENSMUSG00000061887,conserved gene but different region,4,106910899,106911838,940,*,940,140,0.779787234,0.995070018,0.14893617,1.04E-133,CpGisland,TRUE,U1,Pr-A
13819,cg17959247,0.0000822,0.00000645,12.73794501,3.54E-30,gain,yes,0.0000076,0.000011,0.693363526,0.488600609,pos,ns,0.010414152,0.003210688,3.243588585,0.001309101,pos,ns,2.883026712,-0.0000406,0.000110415,-0.36775902,0.71330389,neg,ns,0.176602659,Six1,Six1_Intergenic_downstream,12,73035701,73035750,73035701,73035702,50,-,CGTTACAACTTTCATTTCCTGAAATGTTTGAGGGAACATCCAGGGTTTTT,Distal Intergenic,12,73040015,73042815,2801,2,Six1-204,7114,Six1-204,Six1,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,18,20471,ENSMUSG00000051367,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
27301,cg19115789,-0.00000247,0.00000605,-0.408612027,0.683106521,loss,ns,0.00000713,0.0000103,0.693287921,0.488647978,pos,ns,0.000663553,0.003011562,0.220335194,0.825755146,pos,ns,0.083148711,-0.000184757,0.000103567,-1.783929017,0.075413258,neg,ns,0.601980256,Grpr,Grpr_Exon,X,163515121,163515170,163515121,163515122,50,+,CGGGCACAGATGCTGGTGACAAAGTGGAGCATGGAGGTGTCCACCTCAGA,"Exon (Grpr-201/Grpr, exon 3 of 3)",20,163513904,163549677,35774,2,Grpr-201,34507,Grpr-201,Grpr,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,14829,ENSMUSG00000031364,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
788,cg03784629,-0.0000202,0.00000565,-3.580531598,0.000397901,loss,ns,0.00000665,0.0000096,0.693203636,0.48870079,pos,ns,-0.008262163,0.00281144,-2.938765547,0.003542626,neg,ns,2.450674755,0.0000548,0.0000967,0.566911789,0.57118436,pos,ns,0.80995438,Sash1,Sash1_Exon,10,8740290,8740339,8740290,8740291,50,+,CGTAGATGAACTTGAACGTGCCGACTTTGTTGTTCAGCAGGCCCATCCAG,"Exon (Sash1-201/Sash1, exon 15 of 20)",10,8722219,8886070,163852,2,Sash1-201,145731,Sash1-201;Sash1-203,Sash1;Sash1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,70097,ENSMUSG00000015305,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5201,cg05254441,-0.000000878,0.00000279,-0.315188019,0.752830962,loss,ns,0.00000328,0.00000473,0.693201555,0.488702094,pos,ns,-0.002406984,0.00138632,-1.736239276,0.083515041,neg,ns,1.0782353,0.0000552,0.0000477,1.157789885,0.247841035,pos,ns,0.924054738,Ets1,Ets1_Exon,9,32738299,32738348,32738299,32738300,50,+,CGTGCTGACCTCAATAAGGACAAGCCTGTCATTCCTGCTGCTGCCCTAGC,"Exon (Ets1-207/Ets1, exon 8 of 10)",9,32636248,32754994,118747,1,Ets1-207,102051,Ets1-207;Ets1-201;Ets1-202;Ets1-206;Ets1-205,Ets1;Ets1;Ets1;Ets1;Ets1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,8,23871,ENSMUSG00000032035,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22283,cg03574837,-0.000000479,0.00000218,-0.219878088,0.826110821,loss,ns,0.00000257,0.0000037,0.693158581,0.488729022,pos,ns,0.001809523,0.001084768,1.668118848,0.096301849,pos,ns,1.016365375,-0.0000678,0.0000373,-1.817364199,0.0701267,neg,ns,0.937197024,Tead1,Tead1_Exon,7,112876092,112876141,112876092,112876093,50,+,CGTGCACATTGGGCATGCCAACCATTCTTACAGTGACCCATTGCTTGAAT,"Exon (Tead1-203/Tead1, exon 9 of 12)",7,112679318,112899459,220142,1,Tead1-203,196774,Tead1-203;Tead1-216;Tead1-217;Tead1-201;Tead1-204;Tead1-206;Tead1-202;Tead1-211;Tead1-207;Tead1-210;Tead1-212,Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,16,21676,ENSMUSG00000055320,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10688,cg15657067,-0.000025,0.00000593,-4.219794726,0.0000322,loss,ns,-0.00000698,0.0000101,-0.693155029,0.488731247,neg,ns,-0.00056138,0.002949644,-0.190321182,0.849182026,neg,ns,0.070999207,-0.0000704,0.000101438,-0.694382308,0.48796254,neg,ns,0.918595339,Zfp608,Zfp608_Intron,18,54978557,54978606,54978605,54978606,50,+,ACATTTTGCAACTAATTGGAAGCAGATTAGAATTCTGCCTCAGGGGAACG,"Intron (Zfp608-201/Zfp608, intron 2 of 9)",18,54888048,54990166,102119,2,Zfp608-201,11560,Zfp608-201;Zfp608-203,Zfp608;Zfp608,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,32,269023,ENSMUSG00000052713,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U5,En-Sd
14702,cg05007511,0.00000261,0.00000384,0.679305981,0.497450888,gain,ns,0.00000452,0.00000652,0.693148835,0.488735129,pos,ns,0.00334876,0.001911357,1.752032448,0.080756981,pos,ns,1.092819927,-0.0000885,0.0000657,-1.347058763,0.178945163,neg,ns,0.937915687,2210408I21Rik,2210408I21Rik_Intron,13,77385647,77385696,77385695,77385696,50,+,CATGGTAGTCCACATCCTAGTTTACAGGCCAGAGTGCTTTTGTGCCCCCG,"Intron (2210408I21Rik-201/2210408I21Rik, intron 19 of 19)",13,77135540,77613784,478245,1,2210408I21Rik-201,250107,2210408I21Rik-201,2210408I21Rik,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,19,20,72371,ENSMUSG00000071252,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12324,cg14247424,-0.0000536,0.0000151,-3.545470735,0.000452377,loss,ns,0.0000178,0.0000257,0.693124115,0.488750619,pos,ns,0.001138579,0.007520465,0.151397435,0.879760687,pos,ns,0.055635449,-0.000280256,0.000258628,-1.083626911,0.279372338,neg,ns,0.678710223,Gm49627,Gm49627_Promoter,16,63958324,63958373,63958324,63958325,50,+,CGATGACTAACTTCCATTGTGCAAAGAACTTAATTACATAGTGTGGTTCA,Promoter (3-4kb),16,63954086,63955130,1045,2,Gm49627-201,-3194,Gm49627-201,Gm49627,-3194,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13494,cg13922970,0.00000016,0.00000163,0.098301698,0.921756261,gain,ns,0.00000192,0.00000277,0.693113575,0.488757224,pos,ns,0.001367246,0.000811952,1.683899791,0.093207631,pos,ns,1.030548531,-0.000014,0.0000279,-0.503122839,0.615235187,neg,ns,0.067858978,Tlk1,Tlk1_Exon,2,70825269,70825318,70825269,70825270,50,+,CGTGGAGAGCTGGGACCAAGATGGCGGCCCCTCCAAACTTCCACTGCTAC,Promoter (<=1kb),2,70749235,70825311,76077,2,Tlk1-204,0,Tlk1-205;Tlk1-201;Tlk1-203;Tlk1-204;Tlk1-202,Tlk1;Tlk1;Tlk1;Tlk1;Tlk1,0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,228012,ENSMUSG00000041997,conserved gene and region,2,70824840,70825294,455,*,455,56,0.756043956,0.867876971,0.123076923,2.55E-48,CpGisland,TRUE,U1,Pr-A
23605,cg17031780,0.0000416,0.0000102,4.067450372,0.0000603,gain,ns,-0.000012,0.0000174,-0.692982702,0.488839237,neg,ns,-0.002690231,0.005090561,-0.528474367,0.597548263,neg,ns,0.223627012,0.0000385,0.000175064,0.219644141,0.826292869,pos,ns,0.789329928,Dll4,Dll4_Intergenic_upstream,2,119311598,119311647,119311598,119311599,50,+,CGATAACAAGGAAAACAAAATCTAGCGCAGGGCATCAGAGACTTCCTGAG,Distal Intergenic,2,119325784,119335962,10179,1,Dll4-201,-14137,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,20,54485,ENSMUSG00000027314,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18508,cg09673208,0.000103309,0.0000114,9.045615545,1.67E-17,gain,yes,-0.0000134,0.0000194,-0.692908252,0.488885896,neg,ns,0.013570733,0.005684317,2.387399287,0.017566994,pos,ns,1.755302556,-0.000392248,0.000195483,-2.006558608,0.045664844,neg,ns,0.088934922,Tenm4,Tenm4_fiveUTR,7,96210126,96210175,96210174,96210175,50,-,TCGGGATTGCAGCTGTTTCATGTGGGGCAGCAGTGCTGGCAGGGACGCCG,Promoter (<=1kb),7,96210146,96438966,228821,1,Tenm4-204,0,Tenm4-201;Tenm4-211;Tenm4-208;Tenm4-204;Tenm4-209;Tenm4-203;Tenm4-202,Tenm4;Tenm4;Tenm4;Tenm4;Tenm4;Tenm4;Tenm4,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,26,23966,ENSMUSG00000048078,conserved gene and region,7,96210171,96211091,921,*,921,99,0.711183496,0.850439308,0.107491857,1.95E-78,CpGisland,TRUE,U3,Pr-B
17577,cg14321127,0.000113577,0.0000154,7.367416285,1.59E-12,gain,yes,-0.0000181,0.0000262,-0.692791069,0.48895934,neg,ns,0.023358749,0.00767274,3.044381508,0.002531441,pos,ns,2.596632265,-0.000797263,0.000263865,-3.021481141,0.002724972,neg,ns,0.522253802,H3f3a-ps2,H3f3a-ps2_Intergenic_downstream,16,91105313,91105362,91105361,91105362,50,-,ACTGTCAGTCTAAAAACGTTAACCTGCCTGGGTCCCGGGGTATGGGAGCG,Distal Intergenic,16,91114189,91114599,411,2,H3f3a-ps2-201,9286,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,15080,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
545,cg23563008,0.0000163,0.00000553,2.936651379,0.003566196,gain,ns,0.00000651,0.0000094,0.692752185,0.488983712,pos,ns,0.001262137,0.002754552,0.458200475,0.647129446,pos,ns,0.189008838,0.00011527,0.0000947,1.216843506,0.224589357,pos,ns,0.088413083,Dlx6,Dlx6_Exon,6,6863726,6863775,6863726,6863727,50,+,CGCTCGCCGCCTACCCCTACATGAGCCACTCGCAGCACAGCCCTTACCTC,Promoter (<=1kb),6,6863334,6867970,4637,1,Dlx6-203,392,Dlx6-203;Dlx6-202;Dlx6-201;Dlx6-204,Dlx6;Dlx6;Dlx6;Dlx6,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,36,13396,ENSMUSG00000029754,conserved gene and region,6,6863522,6864073,552,*,552,68,0.757246377,0.942239627,0.123188406,1.36E-58,CpGisland,TRUE,U3,Pr-B
14101,cg06017546,-0.00000111,0.000000868,-1.276073797,0.202884673,loss,ns,-0.00000102,0.00000148,-0.692734796,0.488994611,neg,ns,-0.000575298,0.000432168,-1.331189667,0.184104751,neg,ns,0.734935004,0.00000847,0.0000149,0.570175344,0.568971776,pos,ns,0.98218717,Pafah1b1,Pafah1b1_Exon,11,74679481,74679530,74679529,74679530,50,-,TGCGCATTGAGGGTCTTCATGCATCGCTTGTTCTTGTAATCCCATACGCG,"Exon (Pafah1b1-203/Pafah1b1, exon 9 of 9)",11,74673949,74724335,50387,2,Pafah1b1-203,44805,Pafah1b1-203;Pafah1b1-201;Pafah1b1-202;Pafah1b1-205,Pafah1b1;Pafah1b1;Pafah1b1;Pafah1b1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,5,18472,ENSMUSG00000020745,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21941,cg22048157,-0.00000237,0.0000011,-2.145781051,0.03266674,loss,ns,0.0000013,0.00000188,0.692589526,0.489085671,pos,ns,0.001200927,0.000549648,2.18490121,0.029644597,pos,ns,1.528054453,-0.000052,0.0000189,-2.748581392,0.006336215,neg,ns,0.01982617,Ap1g1,Ap1g1_fiveUTR,8,109778875,109778924,109778923,109778924,50,+,AGGGAGCCGCCATTTTGGATGTTCGGTTCCTGCTGCCACTGCTGCCGCCG,Promoter (<=1kb),8,109778897,109805668,26772,1,Ap1g1-204,0,Ap1g1-202;Ap1g1-204;Ap1g1-201,Ap1g1;Ap1g1;Ap1g1,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,16,11765,ENSMUSG00000031731,conserved gene and region,8,109778360,109779060,701,*,701,74,0.687589158,0.89437931,0.105563481,3.73E-58,CpGisland,TRUE,U1,Pr-A
4391,cg21039445,-0.0000131,0.00000895,-1.465150218,0.143893395,loss,ns,0.0000105,0.0000152,0.692578233,0.48909275,pos,ns,0.00325112,0.004452053,0.730251836,0.465787752,pos,ns,0.331811936,-0.000348879,0.000153106,-2.2786776,0.023366123,neg,ns,0.759063116,Unc5d,Unc5d_Exon,8,28724226,28724275,28724226,28724227,50,-,CGGACTGTTTTGAAGTTGAAGGTCTGGAAGCCACCTGTCAATGCAGAAGA,"Exon (Unc5d-201/Unc5d, exon 10 of 18)",8,28646717,29219636,572920,2,Unc5d-201,495361,Unc5d-201;Unc5d-204;Unc5d-202;Unc5d-203;Unc5d-205,Unc5d;Unc5d;Unc5d;Unc5d;Unc5d,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,11,210801,ENSMUSG00000063626,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15858,cg19251730,0.000000655,0.00000167,0.392170187,0.695201951,gain,ns,0.00000197,0.00000284,0.692560778,0.489103692,pos,ns,0.001537315,0.000831356,1.84916471,0.065385899,pos,ns,1.184515901,-0.0000465,0.0000286,-1.627003647,0.104752301,neg,ns,0.960818413,Ddx39,Ddx39_Exon,8,83720564,83720613,83720612,83720613,50,-,ATGTGCCACACGAGGGAGCTGGCCTTCCAGATCAGCAAGGAATATGAGCG,"Exon (Ddx39-201/Ddx39, exon 4 of 11)",8,83715177,83723348,8172,1,Ddx39-201,5387,Adgre5-201;Adgre5-208;Adgre5-202;Adgre5-203;Adgre5-204;Adgre5-205;Ddx39-201;Ddx39-203;Ddx39-205;Ddx39-206;Ddx39-207;Ddx39-202;Ddx39-204,Adgre5;Adgre5;Adgre5;Adgre5;Adgre5;Adgre5;Ddx39;Ddx39;Ddx39;Ddx39;Ddx39;Ddx39;Ddx39,20713;20713;20556;20560;4196;7691;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,68278,ENSMUSG00000005481,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7986,cg16101094,0.0000273,0.00000831,3.280585642,0.001153963,gain,ns,0.00000978,0.0000141,0.692540984,0.489116101,pos,ns,0.008511086,0.004137791,2.056915593,0.040530796,pos,ns,1.392214862,-0.000333251,0.000142298,-2.341915572,0.019817865,neg,ns,0.046444135,Pax2,Pax2_Intergenic_upstream,19,44674799,44674848,44674799,44674800,50,+,CGTGCGGCCCCGACTGCAGACGCAGATGAAATTCTGTGCCGAGCCTGATG,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-81197,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,19,44674652,44674916,265,*,265,31,0.59245283,1.339693412,0.116981132,3.55E-26,CpGisland,TRUE,U13,Hc-P
22018,cg10177947,-0.0000256,0.0000166,-1.542609996,0.123945589,loss,ns,-0.0000196,0.0000282,-0.692506371,0.4891378,neg,ns,0.008413776,0.008274709,1.01680635,0.31003847,pos,ns,0.508584415,-0.00026104,0.000284567,-0.917323897,0.359686044,neg,ns,0.461107864,Dio3,Dio3_Intron,12,110187213,110187262,110187261,110187262,50,+,ATTGCTTTCTGACTTTCTATGAAACTTTCTAAGCTATGCTGACATCCTCG,"Intron (Gm34785-201/Gm34785-201, intron 1 of 3)",12,110279068,110281097,2030,1,Dio3-202,-91806,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,107585,ENSMUSG00000075707,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
8583,cg06225765,-0.00000352,0.00000305,-1.152399972,0.250044638,loss,ns,0.00000359,0.00000518,0.692505526,0.48913833,pos,ns,0.000626642,0.001518457,0.412683465,0.680123808,pos,ns,0.167412022,-0.0000226,0.0000522,-0.43366294,0.664834847,neg,ns,0.915148412,Snrnp70,Snrnp70_Exon,7,45383171,45383220,45383219,45383220,50,+,CAGCTGCGTGGTGGCTGCAGTGACAATAAGAACAGTCAATTAATACGGCG,"Exon (Snrnp70-216/Snrnp70, exon 8 of 10)",7,45376453,45395742,19290,2,Snrnp70-201,12522,Snrnp70-201;Snrnp70-207;Snrnp70-216;Snrnp70-215;Snrnp70-214;Snrnp70-204;Snrnp70-209;Snrnp70-213;Snrnp70-206;Snrnp70-205;Snrnp70-217;Snrnp70-203;Snrnp70-202;Snrnp70-212;Snrnp70-211,Snrnp70;Snrnp70;Snrnp70;Snrnp70;Snrnp70;Snrnp70;Snrnp70;Snrnp70;Snrnp70;Snrnp70;Snrnp70;Snrnp70;Snrnp70;Snrnp70;Snrnp70,0;0;0;0;0;0;-1854;0;11579;4550;11952;11974;11499;12489;9558,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,8,20637,ENSMUSG00000063511,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2918,cg15813117,-7.32E-08,0.000000812,-0.09009361,0.928271009,loss,ns,-0.000000956,0.00000138,-0.69239106,0.489210091,neg,ns,0.000290019,0.000404323,0.71729583,0.473731704,pos,ns,0.32446755,-0.000029,0.0000139,-2.088602987,0.037559023,neg,ns,0.9744413,Ehbp1,Ehbp1_Exon,11,22053407,22053456,22053455,22053456,50,-,TTTACAGTGTAATTGGGCACCGTACCTGTGTCCATGAGATAGCGAAGGCG,"Exon (Ehbp1-201/Ehbp1, exon 20 of 24)",11,22005828,22285838,280011,2,Ehbp1-201,232382,Ehbp1-201;Ehbp1-202;Ehbp1-207,Ehbp1;Ehbp1;Ehbp1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,45,216565,ENSMUSG00000042302,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18753,cg10644072,0.0000165,0.00000354,4.654563555,0.00000482,gain,ns,0.00000416,0.00000601,0.692389352,0.489211162,pos,ns,0.002982966,0.001762023,1.692920949,0.091475152,pos,ns,1.038696861,-0.0000899,0.0000606,-1.483940394,0.13884075,neg,ns,0.033161074,Dscam,Dscam_fiveUTR,16,97170240,97170289,97170240,97170241,50,+,CGAAGCTCTGGAACAAGGAGAGAGCCAGTATCCACATGCCCCTGCCGCTC,Promoter (<=1kb),16,96590840,97170752,579913,2,Dscam-201,463,Dscam-201,Dscam,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,12,13508,ENSMUSG00000050272,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
20727,cg19449618,0.0000724,0.0000144,5.024199067,0.000000856,gain,yes,-0.000017,0.0000245,-0.692337376,0.489243749,neg,ns,0.021144452,0.007173374,2.947629884,0.003445341,pos,ns,2.462767803,-0.000559974,0.000246692,-2.269935784,0.023897843,neg,ns,0.393743255,Cstf3,Cstf3_Exon,2,104663399,104663448,104663447,104663448,50,-,AAACCAGACACTCAGCAGATGATTCCATTTCAGCCACGACATTTAGCACG,"Exon (Cstf3-201/Cstf3, exon 18 of 21)",2,104590523,104665429,74907,1,Cstf3-201,72876,Cstf3-201;Cstf3-203;Cstf3-205;Cstf3-204;Tcp11l1-204,Cstf3;Cstf3;Cstf3;Cstf3;Tcp11l1,0;0;0;-218;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,6,228410,ENSMUSG00000027176,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13196,cg04967411,-0.00000103,0.0000109,-0.093939881,0.925217599,loss,ns,0.0000129,0.0000186,0.692329387,0.489248758,pos,ns,0.02068913,0.005443412,3.800765094,0.000173651,pos,ns,3.760322379,-0.000926906,0.000187198,-4.951463147,0.00000121,neg,yes,0.417173289,Foxb1,Foxb1_Intergenic_downstream,9,69734962,69735011,69735010,69735011,50,-,AAATTAATTAATTAACTGTAACTGAATTTCACCTCTTTAACCTTAACTCG,Distal Intergenic,9,69757710,69760940,3231,2,Foxb1-201,25978,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,21,64290,ENSMUSG00000059246,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2438,cg22528869,0.0000344,0.0000225,1.531560622,0.126650719,gain,ns,-0.0000264,0.0000382,-0.692226525,0.489313252,neg,ns,-0.015293919,0.011180755,-1.367878884,0.172340732,neg,ns,0.763612068,0.000904118,0.000384505,2.351381324,0.019329609,pos,ns,0.353768491,Ptf1a,Ptf1a_Intergenic_downstream,2,19451527,19451576,19451527,19451528,50,+,CGTTACATAAAGTGACTCTGTTACCATAAGGCTCTCACCATCCTGGCCTA,Distal Intergenic,2,19445663,19447501,1839,1,Ptf1a-201,5864,Ptf1a-201,Ptf1a,5864,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,14,21,19213,ENSMUSG00000026735,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
16000,cg27487378,0.0000259,0.00000982,2.632368006,0.008903775,gain,ns,0.0000116,0.0000167,0.692205852,0.489326215,pos,ns,0.01025763,0.004889818,2.097752784,0.036736379,pos,ns,1.434903658,-0.000302663,0.00016816,-1.799848227,0.072856795,neg,ns,0.700342033,Dysf,Dysf_Intron,6,84120034,84120083,84120082,84120083,50,+,TTCGTATTATTCTTTTTCCAGCTAATATCCTGGCATTTCCAAAGACACCG,"Intron (Dysf-204/Dysf, intron 30 of 54)",6,84008590,84211060,202471,1,Dysf-204,111444,Dysf-204;Dysf-205;Dysf-213;Dysf-215;Dysf-210;Dysf-211;Dysf-212;Dysf-214;Dysf-216;Dysf-202;Dysf-203;Dysf-201;Dysf-209,Dysf;Dysf;Dysf;Dysf;Dysf;Dysf;Dysf;Dysf;Dysf;Dysf;Dysf;Dysf;Dysf,0;0;0;0;0;0;0;0;0;0;0;0;13483,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,15,26903,ENSMUSG00000033788,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22924,cg27050569,0.00000646,0.00000154,4.19608927,0.0000355,gain,ns,0.00000181,0.00000262,0.692165945,0.489351238,pos,ns,0.002190514,0.000766429,2.858078571,0.004550671,pos,ns,2.341924541,-0.0000938,0.0000264,-3.557560399,0.000432848,neg,ns,0.044797249,Gm49337,Gm49337_Exon,4,116222375,116222424,116222375,116222376,50,-,CGACAGAACTGATATTTTATATTGAAATGGATCCTCCAGGTACTTGGGAG,"Exon (Pik3r3-203/Pik3r3, exon 2 of 4)",4,116173384,116299841,126458,1,Gm49337-201,48991,Gm49337-201;Pik3r3-203;Pik3r3-201;Pik3r3-202,Gm49337;Pik3r3;Pik3r3;Pik3r3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,,NA,mapped to different genes,4,116222284,116222376,93,*,93,9,0.59139785,1.137228261,0.096774194,0.000000492,CpGisland,TRUE,NA,NRS
11741,cg14465076,0.0000167,0.00000378,4.406394879,0.0000145,gain,ns,0.00000444,0.00000642,0.692077478,0.489406713,pos,ns,0.006382802,0.001881353,3.392666385,0.000781995,pos,ns,3.106796211,-0.000144117,0.0000647,-2.227473508,0.026633276,neg,ns,0.077603261,Amer2,Amer2_Exon,14,60379322,60379371,60379322,60379323,50,-,CGGCAGATCGTATTTGTTTGATGTTTTCTGACGTGACTTCACTGAAAAGC,"Exon (Amer2-201/Amer2, exon 1 of 1)",14,60373259,60380655,7397,1,Amer2-203,6063,Amer2-203;Amer2-202;Amer2-201;Amer2-204,Amer2;Amer2;Amer2;Amer2,0;6035;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,72125,ENSMUSG00000021986,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
19734,cg05723638,-0.000000766,0.00000235,-0.325178398,0.745265409,loss,ns,0.00000277,0.000004,0.691919144,0.489506007,pos,ns,0.001884484,0.001171744,1.608273038,0.108793317,pos,ns,0.963397781,-0.0000503,0.0000403,-1.248095223,0.212938051,neg,ns,0.956132533,Scn8a,Scn8a_Exon,15,100959395,100959444,100959443,100959444,50,+,GTACTGAGGGCTTTGAAAACTATTTCGGTAATCCCAGGTAAGATGGTCCG,"Exon (Scn8a-212/Scn8a, exon 6 of 15)",15,100870645,101011064,140420,1,Scn8a-212,88750,Scn8a-212;Scn8a-201;Scn8a-204;Scn8a-213;Scn8a-203;Scn8a-205;Scn8a-208;Scn8a-210;Scn8a-216;Scn8a-215;Scn8a-219,Scn8a;Scn8a;Scn8a;Scn8a;Scn8a;Scn8a;Scn8a;Scn8a;Scn8a;Scn8a;Scn8a,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,18,24,20273,ENSMUSG00000023033,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27697,cg08496735,-0.0000681,0.0000125,-5.465566051,0.000000095,loss,yes,0.0000146,0.0000212,0.691878381,0.489531572,pos,ns,0.006716468,0.006202138,1.082927726,0.279682096,pos,ns,0.553335335,-0.0000716,0.000213291,-0.335726692,0.737304077,neg,ns,0.679896306,Zbtb18,Zbtb18_Exon,1,177445607,177445656,177445655,177445656,50,+,CCATATGGCCACAGTCAGCTGGATCAGATGTTTATAAGCTTCCTTCTTCG,Promoter (<=1kb),1,177445631,177446505,875,1,Zbtb18-207,0,Zbtb18-209;Zbtb18-211;Zbtb18-208;Zbtb18-203;Zbtb18-202;Zbtb18-204;Zbtb18-206;Zbtb18-210;Zbtb18-205;Zbtb18-212;Zbtb18-207;Zbtb18-201,Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,22,30928,ENSMUSG00000063659,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12035,cg00876659,-0.0000146,0.0000127,-1.15041697,0.250858815,loss,ns,0.0000149,0.0000216,0.691837068,0.489557483,pos,ns,0.006072758,0.006319431,0.960965955,0.337318217,pos,ns,0.471960204,-0.000455488,0.000217325,-2.095888636,0.036902719,neg,ns,0.723591349,Gcg,Gcg_Exon,2,62476836,62476885,62476836,62476837,50,+,CGGCCTTTCACCAGCCAAGCAATGAATTCCTTGGCAGCTTGGCCTTCCAA,"Exon (Gcg-201/Gcg, exon 4 of 6)",2,62474530,62483650,9121,2,Gcg-201,6765,Gcg-201;Gcg-202;Gcg-203,Gcg;Gcg;Gcg,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,3,14526,ENSMUSG00000000394,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16203,cg25873635,-0.00000251,0.000000946,-2.64818595,0.00850662,loss,ns,-0.00000111,0.00000161,-0.691633812,0.489684972,neg,ns,0.000118934,0.000471015,0.252506724,0.80081676,pos,ns,0.096466846,0.0000052,0.0000162,0.321084315,0.748362854,pos,ns,0.039352851,Vsx2,Vsx2_Intron,12,84590045,84590094,84590045,84590046,50,-,CGCGATGTTAAACAGGTGTCAAAGGCGCCCCATATATCTGCAGATTGAAA,"Intron (Vsx2-201/Vsx2, intron 3 of 4)",12,84569762,84595457,25696,1,Vsx2-201,20283,Vsx2-201;Vsx2-202,Vsx2;Vsx2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,20,12677,ENSMUSG00000021239,conserved gene and region,12,84590042,84590334,293,*,293,26,0.56996587,1.09265634,0.088737201,1.04E-18,CpGisland,TRUE,U2,Pr-W
2185,cg10024790,-0.000000683,0.00000967,-0.070633037,0.94373536,loss,ns,0.0000114,0.0000164,0.691601893,0.489704995,pos,ns,0.001290337,0.004813262,0.268079516,0.788816405,pos,ns,0.103024066,-0.00013028,0.000165528,-0.787060119,0.431847974,neg,ns,0.838976297,Defb41,Defb41_Intergenic_upstream,1,18307934,18307983,18307934,18307935,50,+,CGACCAGTTATAAAAAAAACATGATGGAAAGATGGTAAGAAGCCAATTAG,Distal Intergenic,1,18250980,18265138,14159,2,Defb41-201,-42796,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,6,77673,ENSMUSG00000067773,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3055,cg10915190,0.00000945,0.00000393,2.404932642,0.016761382,gain,ns,0.00000461,0.00000667,0.691585253,0.489715433,pos,ns,-0.000129398,0.001954684,-0.066198857,0.947262178,neg,ns,0.023529803,0.00013682,0.0000672,2.0353691,0.042664009,pos,ns,0.900323095,Lrmda,Lrmda_Intron,14,22487319,22487368,22487319,22487320,50,-,CGGTTGGTGATATAGCCTTGCTGGATATGGGGAAATTTGTTACCTTTAGC,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,467607,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206;Lrmda-202,Lrmda;Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3842,cg06328360,-0.000000916,0.00000386,-0.237605442,0.812344087,loss,ns,-0.00000453,0.00000655,-0.691201032,0.489956487,neg,ns,-0.000713951,0.001919351,-0.371975408,0.710165299,neg,ns,0.148640553,-0.0000236,0.000066,-0.357824809,0.720717933,neg,ns,0.919440074,Dmrt1,Dmrt1_Intron,19,25568432,25568481,25568432,25568433,50,-,CGGTGAAGTGTTCTTCATAAAAACCAGCTCAGTGTGAAATACACCTCGCT,"Intron (Dmrt1-201/Dmrt1, intron 4 of 4)",19,25505618,25604329,98712,1,Dmrt1-201,62814,Dmrt1-201;Dmrt1-202,Dmrt1;Dmrt1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,9,50796,ENSMUSG00000024837,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12447,cg07903650,0.00000291,0.00000261,1.113898413,0.266185669,gain,ns,0.00000307,0.00000444,0.691190807,0.489962903,pos,ns,0.00241514,0.001299704,1.858222444,0.064085228,pos,ns,1.193242064,-0.0000759,0.0000447,-1.697993043,0.090512556,neg,ns,0.067541089,Onecut2,Onecut2_Exon,18,64340535,64340584,64340535,64340536,50,-,CGGGGGCCCGGGCCATGAGCAGGAGCTGCTGGCCAGCCCCAGCCCCCACC,Promoter (<=1kb),18,64340020,64400987,60968,1,Onecut2-201,515,Onecut2-201,Onecut2,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,19,225631,ENSMUSG00000045991,conserved gene and region,18,64339929,64340544,616,*,616,67,0.73538961,0.829721362,0.108766234,1.14E-53,CpGisland,TRUE,NA,NRS
19083,cg19130978,0.0000324,0.00000596,5.441252498,0.000000108,gain,yes,0.000007,0.0000101,0.691116756,0.490009369,pos,ns,0.00301101,0.002965616,1.015306854,0.310751338,pos,ns,0.507586993,-0.0000609,0.000101987,-0.597236901,0.550785192,neg,ns,0.167627402,Neurod2,Neurod2_fiveUTR,11,98329629,98329678,98329677,98329678,50,+,AGGCGGGGTACCAGCCTCTATGCCAGGCCATATGGGCTTGGCACGTCACG,Promoter (<=1kb),11,98325415,98329648,4234,2,Neurod2-201,0,Neurod2-201,Neurod2,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,22,18013,ENSMUSG00000038255,conserved gene but different region,11,98329512,98329756,245,*,245,22,0.657142857,0.835658915,0.089795918,5.08E-16,CpGisland,TRUE,U13,Hc-P
26951,cg12375054,0.000106736,0.00000978,10.9182119,1.07E-23,gain,yes,-0.0000115,0.0000166,-0.690960101,0.490107676,neg,ns,0.011883303,0.004865602,2.442308951,0.015152017,pos,ns,1.819529555,-0.000028,0.000167328,-0.167557097,0.867040977,neg,ns,0.551071226,Map1lc3a,Map1lc3a_Exon,2,155277508,155277557,155277556,155277557,50,+,CTTCCTGCTGGTGAACCAGCACAGCATGGTGAGTGTGTCCACGCCCATCG,"Exon (Map1lc3a-201/Map1lc3a, exon 4 of 4)",2,155276297,155278073,1777,1,Map1lc3a-201,1211,Map1lc3a-201;Map1lc3a-202;Map1lc3a-203;Pigu-204;Pigu-201;Pigu-205,Map1lc3a;Map1lc3a;Map1lc3a;Pigu;Pigu;Pigu,0;0;0;23745;79873;79867,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,66734,ENSMUSG00000027602,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1149,cg21803630,0.000024,0.0000112,2.154957708,0.031934975,gain,ns,0.0000131,0.000019,0.690956896,0.490109688,pos,ns,0.021136206,0.005554137,3.805488661,0.000170516,pos,ns,3.768234971,-0.000560892,0.000191006,-2.936512058,0.003567754,neg,ns,0.792086712,Rpl23a-ps13,Rpl23a-ps13_Intergenic_upstream,X,11822031,11822080,11822079,11822080,50,+,GGATTCTCAATGCGGTTTGAACACAATTTGCCAGTGTTGGTTCAGCTCCG,Distal Intergenic,20,11867265,11867705,441,1,Rpl23a-ps13-201,-45185,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,13,14,628338,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11623,cg21852872,0.0000404,0.0000046,8.766726733,1.24E-16,gain,yes,-0.0000054,0.00000782,-0.690943716,0.490117959,neg,ns,0.002109254,0.002290971,0.920681303,0.35793274,pos,ns,0.446198575,0.0000995,0.0000788,1.263204682,0.207464861,pos,ns,0.100748268,Emx2,Emx2_Intergenic_downstream,19,59467353,59467402,59467353,59467354,50,-,CGCCTCAAAAAGGCAGGACAGTCAGCTTATTAGCCGCTCGTTTGCTTTAT,Downstream (1-2kb),19,59462802,59464215,1414,1,Emx2-203,4600,Emx2-201;Emx2-202;Emx2-203,Emx2;Emx2;Emx2,0;7834;4551,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,15,23,13797,ENSMUSG00000043969,mapped to different genes,19,59467121,59467392,272,*,272,18,0.525735294,0.993103448,0.066176471,7.09E-11,CpGisland,TRUE,U13,Hc-P
11175,cg05519841,0.0000535,0.00000532,10.06582839,8.30E-21,gain,yes,-0.00000624,0.00000903,-0.690915391,0.490135736,neg,ns,0.000576557,0.002646288,0.217873946,0.82767067,pos,ns,0.082142434,0.00015385,0.000091,1.690550008,0.091927943,pos,ns,0.70211097,Satb2,Satb2_Intron,1,56833441,56833490,56833489,56833490,50,+,TAATAACCTGATCATTCCATTTTCTCCTTCAACTGCCGGCTGCAGCACCG,"Intron (Satb2-201/Satb2, intron 8 of 9)",1,56793981,56972502,178522,2,Satb2-201,139012,Satb2-201;Satb2-202;Satb2-205,Satb2;Satb2;Satb2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,33,212712,ENSMUSG00000038331,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26313,cg24451994,0.0000126,0.000013,0.966327623,0.334633519,gain,ns,0.0000153,0.0000222,0.690694224,0.490274549,pos,ns,0.016540604,0.006494056,2.547037352,0.011347167,pos,ns,1.945112542,-0.000583733,0.00022333,-2.613767377,0.00939203,neg,ns,0.705678563,Brinp3,Brinp3_Exon,1,146514883,146514932,146514883,146514884,50,-,CGCTCACAGGAATACACAGATTTTGTGGACAGAAGCCGGCAGGGATTTAG,"Exon (Brinp3-201/Brinp3, exon 2 of 8)",1,146494760,146902471,407712,1,Brinp3-201,20123,Brinp3-201;Brinp3-204;Brinp3-205;Brinp3-203;Brinp3-202,Brinp3;Brinp3;Brinp3;Brinp3;Brinp3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,5,215378,ENSMUSG00000035131,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2575,cg22202306,-0.000000649,0.000000423,-1.534109054,0.126022745,loss,ns,0.000000496,0.000000718,0.690625923,0.490317421,pos,ns,0.000387608,0.000210426,1.842015108,0.066427947,pos,ns,1.177649172,-0.0000144,0.00000724,-1.983506732,0.048192836,neg,ns,0.009995749,Usp54,Usp54_fiveUTR,14,20640941,20640990,20640941,20640942,50,-,CGCCGCGGCTGCTATAGCTACAGGGAGCCAAGGCAACCAGCTCTCGCGAC,Promoter (<=1kb),14,20548912,20641063,92152,2,Usp54-201,73,Usp54-201,Usp54,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,9,78787,ENSMUSG00000034235,conserved gene but different region,14,20640577,20641202,626,*,626,64,0.672523962,0.940734479,0.102236422,2.07E-49,CpGisland,TRUE,U1,Pr-A
5390,cg04221741,-0.000000154,0.0000029,-0.053323605,0.957508419,loss,ns,0.0000034,0.00000492,0.690489133,0.490403291,pos,ns,-0.000779218,0.001441623,-0.540514487,0.5892304,neg,ns,0.229714855,0.0000509,0.0000496,1.026948082,0.305245546,pos,ns,0.93687639,Mvb12b,Mvb12b_Intron,2,33759590,33759639,33759638,33759639,50,+,AGCTGTAATTAAGCAGGCCTGTAATTAAGTATATGCCCTTTATCATAACG,"Intron (Mvb12b-201/Mvb12b, intron 7 of 9)",2,33729953,33887946,157994,2,Mvb12b-201,128307,Mvb12b-201,Mvb12b,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,28,47,72543,ENSMUSG00000038740,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25969,cg26479673,-0.00000134,0.00000128,-1.047364757,0.295747292,loss,ns,0.0000015,0.00000217,0.690333042,0.490501286,pos,ns,0.00072801,0.000636447,1.143865535,0.253561904,pos,ns,0.595915996,-0.0000325,0.0000219,-1.486818415,0.138079131,neg,ns,0.964415874,Pdlim5,Pdlim5_Intergenic_downstream,3,142238929,142238978,142238929,142238930,50,+,CGTGATTGATAGAAACCAAACAGCAGCTATTAAAATGTCAGATGCAGACT,Downstream (<1kb),3,142244461,142246549,2089,2,Pdlim5-207,7571,Pdlim5-201;Pdlim5-206;Pdlim5-208;Pdlim5-212;Pdlim5-211,Pdlim5;Pdlim5;Pdlim5;Pdlim5;Pdlim5,0;0;0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,2,6,56376,ENSMUSG00000028273,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24035,cg21950131,-0.00000677,0.00000307,-2.207206899,0.028032008,loss,ns,0.00000359,0.00000521,0.69027268,0.490539185,pos,ns,-0.001941753,0.001525658,-1.272731549,0.204067021,neg,ns,0.690227175,0.0000398,0.0000525,0.757894943,0.449089624,pos,ns,0.930393601,Cux2,Cux2_Intergenic_upstream,5,122063709,122063758,122063709,122063710,50,+,CGGCTGCCTTGCCAGCTATTTGCCTGTATTTAAAACACATATGGGTGATA,Distal Intergenic,5,121884754,122050102,165349,2,Cux2-207,-13607,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,21,13048,ENSMUSG00000042589,conserved gene and region,5,122063570,122063719,150,*,150,11,0.573333333,0.982142857,0.073333333,0.000000279,CpGisland,TRUE,NA,NRS
11985,cg09646675,-0.0000234,0.00000786,-2.970680902,0.003203688,loss,ns,-0.00000922,0.0000134,-0.690189431,0.490591456,neg,ns,-0.002048102,0.003914214,-0.523247254,0.601176009,neg,ns,0.220998359,-0.00019765,0.00013461,-1.46831875,0.14303159,neg,ns,0.884947903,Pard3b,Pard3b_Intron,1,61939893,61939942,61939893,61939894,50,+,CGATCTGATTAGCATGGAGATGATATGAACACAGATTGTATTGATGTTTA,"Intron (Pard3b-205/Pard3b, intron 2 of 4)",1,61638824,62078259,439436,1,Pard3b-205,301069,Pard3b-205;Pard3b-202;Pard3b-206;Pard3b-201;Pard3b-203,Pard3b;Pard3b;Pard3b;Pard3b;Pard3b,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,4,72823,ENSMUSG00000052062,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5318,cg05613307,0.0000111,0.00000184,6.030205769,4.65E-09,gain,yes,-0.00000216,0.00000313,-0.690182058,0.490596086,neg,ns,0.000774364,0.000918117,0.843426336,0.399640371,pos,ns,0.398330646,-0.00000791,0.0000316,-0.250501942,0.802365143,neg,ns,0.033290058,Nkx1-1,Nkx1-1_Promoter,5,33433028,33433077,33433028,33433029,50,+,CGAGTAATTATCCGAATTTTGACCCTATAATTTAGATGTTCGGGGGGAGT,Promoter (<=1kb),5,33430734,33433976,3243,2,Nkx1-1-201,899,Nkx1-1-201,Nkx1-1,0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,8,13,672284,ENSMUSG00000029112,conserved gene and region,5,33432835,33433235,401,*,401,27,0.518703242,1.022283071,0.067331671,3.24E-16,CpGisland,TRUE,U13,Hc-P
10562,cg17376171,0.00000133,0.0000101,0.13124607,0.895665787,gain,ns,-0.0000119,0.0000172,-0.690171196,0.490602906,neg,ns,-0.002582449,0.005036762,-0.512719957,0.608512366,neg,ns,0.215730592,0.000157089,0.000173214,0.906906699,0.365160536,pos,ns,0.762381101,Gm12469,Gm12469_Intergenic_upstream,4,54354560,54354609,54354608,54354609,50,-,ATGGATGGGTGGGCCCGGCTGTGTTTTGGGTTCAGCAAACGTCCCAAACG,Distal Intergenic,4,54235670,54235876,207,2,Gm12469-201,-118733,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,9,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18530,cg27432203,0.0000903,0.0000108,8.333092619,2.59E-15,gain,yes,0.0000127,0.0000184,0.690159896,0.490610002,pos,ns,0.016896024,0.005395756,3.131354265,0.001905944,pos,ns,2.719889912,-0.000331337,0.00018556,-1.785609262,0.075140001,neg,ns,0.217926761,Hoxb9,Hoxb9_threeUTR,11,96274764,96274813,96274812,96274813,50,+,AGACTCCTCAATCTGAGTGAGAGACAAGTCAAAATCTGGTTTCAGAACCG,3' UTR,11,96271457,96276595,5139,1,Hoxb9-201,3307,Hoxb9-201;Hoxb9-202,Hoxb9;Hoxb9,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,22,15417,ENSMUSG00000020875,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
21281,cg11405097,0.000017,0.00000588,2.892399662,0.004093638,gain,ns,-0.00000689,0.00000999,-0.690110669,0.490640913,neg,ns,0.00184978,0.002926286,0.632125592,0.527770726,pos,ns,0.277554702,0.0000235,0.000100635,0.233371434,0.815627017,pos,ns,0.867106723,Dock3,Dock3_Exon,9,107082444,107082493,107082492,107082493,50,-,CCAGACAGTAGCTGCCTTCGCAGGTCAATAAGTTCATTCATCACATGGCG,"Exon (Dock3-201/Dock3, exon 6 of 53)",9,106892825,107231909,339085,2,Dock3-201,149416,Dock3-201;Dock3-207;Dock3-209,Dock3;Dock3;Dock3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,9,208869,ENSMUSG00000039716,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2550,cg19811388,-0.00000185,0.00000203,-0.912406947,0.362263536,loss,ns,0.00000237,0.00000344,0.68985133,0.490803777,pos,ns,-0.00144292,0.001007888,-1.431626871,0.153258046,neg,ns,0.814576715,0.0000659,0.0000347,1.900068215,0.058351884,pos,ns,0.952490526,Ppp3cb,Ppp3cb_Exon,14,20501510,20501559,20501510,20501511,50,-,CGTGGTTCTCAGTGGCATGTGCGGTGTTCAGAGAATTGAAACCATCTTGC,"Exon (Ppp3cb-202/Ppp3cb, exon 14 of 14)",14,20499364,20546573,47210,2,Ppp3cb-202,45014,Mss51-201;Ppp3cb-202;Ppp3cb-205;Ppp3cb-201;Ppp3cb-208,Mss51;Ppp3cb;Ppp3cb;Ppp3cb;Ppp3cb,-4609;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,10,19056,ENSMUSG00000021816,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15449,cg19334246,-0.0000824,0.0000119,-6.908448356,2.79E-11,loss,yes,-0.000014,0.0000203,-0.689833695,0.490814853,neg,ns,-0.01036181,0.005938441,-1.744870308,0.0819984,neg,ns,1.086194621,0.000194306,0.000204223,0.951442979,0.342120763,pos,ns,0.873190106,Tnrc6b,Tnrc6b_threeUTR,15,80930076,80930125,80930124,80930125,50,-,CTGGCACATGTAACTGCCCAGGCATGCTCGTTCTGGTGTGTGTGTGCACG,3' UTR,15,80711313,80941085,229773,1,Tnrc6b-201,218763,Tnrc6b-201;Tnrc6b-208;Tnrc6b-210,Tnrc6b;Tnrc6b;Tnrc6b,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,threeUTR,4,24,213988,ENSMUSG00000047888,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22936,cg08525042,-0.00000949,0.00000876,-1.083485093,0.279435148,loss,ns,-0.0000103,0.0000149,-0.689666367,0.490919951,neg,ns,-0.009998641,0.004358248,-2.294188083,0.022448064,neg,ns,1.648821107,0.000197217,0.00014988,1.315834004,0.189201995,pos,ns,0.097073438,Isl1,Isl1_Exon,13,116308390,116308439,116308390,116308391,50,+,CGGAGAAACCCTCAGAATATACTGATCGTGAATCTGATTGCCGCAACCAA,"Exon (Isl1-201/Isl1, exon 2 of 6)",13,116298281,116309689,11409,2,Isl1-201,1250,Isl1-201;Isl1-202;Isl1-204;Isl1-205,Isl1;Isl1;Isl1;Isl1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,14,16392,ENSMUSG00000042258,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
14525,cg22671032,-0.000000276,0.00000251,-0.109889006,0.912568504,loss,ns,0.00000294,0.00000427,0.68962899,0.490943429,pos,ns,0.001671409,0.001250038,1.337086798,0.182174617,pos,ns,0.739512135,-0.0000696,0.000043,-1.619394066,0.106379341,neg,ns,0.948012572,Smad2,Smad2_Exon,18,76286850,76286899,76286898,76286899,50,+,TTATGCACAGCACTTGCTCTGAAATTTGGGGACTGAGTACACCAAATACG,"Exon (Smad2-205/Smad2, exon 3 of 11)",18,76241580,76310963,69384,1,Smad2-205,45270,Smad2-205;Smad2-202;Smad2-206;Smad2-207;Smad2-201;Smad2-204;Smad2-203,Smad2;Smad2;Smad2;Smad2;Smad2;Smad2;Smad2,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,17126,ENSMUSG00000024563,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17901,cg06566869,0.00000337,0.00000531,0.634305878,0.526349016,gain,ns,0.00000622,0.00000903,0.689505477,0.491021017,pos,ns,-0.002162424,0.002644849,-0.817598216,0.414214589,neg,ns,0.382774609,0.0000337,0.000091,0.370496534,0.711265583,pos,ns,0.835876697,Dlg2,Dlg2_Exon,7,92418096,92418145,92418096,92418097,50,-,CGGATTAGGTGACGACGGTTATGGAACAAAGACTCTGAGTAAGTTTCCAG,"Exon (Dlg2-217/Dlg2, exon 22 of 28)",7,90477231,92449247,1972017,1,Dlg2-217,1940865,Dlg2-217;Dlg2-204;Dlg2-201;Dlg2-220;Dlg2-218;Dlg2-219;Dlg2-203;Dlg2-202;Dlg2-212;Dlg2-208;Dlg2-207;Dlg2-214,Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,21,23859,ENSMUSG00000052572,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15196,cg18423344,-0.0000415,0.00000927,-4.476770002,0.0000107,loss,ns,0.0000109,0.0000157,0.689407875,0.491082333,pos,ns,-0.005135517,0.004611969,-1.11351938,0.266348074,neg,ns,0.574550439,0.000294987,0.000158605,1.859878829,0.063849712,pos,ns,0.886826894,Nf1,Nf1_Exon,11,79535676,79535725,79535724,79535725,50,+,AAGCCATATGAAATTGTAGTGGACCTTACCCATACCGGGCCTAGCAATCG,"Exon (Nf1-202/Nf1, exon 36 of 57)",11,79339792,79578942,239151,1,Nf1-202,195884,Nf1-202;Nf1-201;Nf1-208,Nf1;Nf1;Nf1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,6,18015,ENSMUSG00000020716,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11286,cg01580681,0.000104792,0.00000902,11.61672395,3.85E-26,gain,yes,-0.0000106,0.0000153,-0.689367892,0.491107453,neg,ns,0.012506089,0.004489744,2.785479601,0.005673883,pos,ns,2.246119625,-0.000259606,0.000154402,-1.681362475,0.093699651,neg,ns,0.199401522,Hand2,Hand2_Exon,8,57322330,57322379,57322330,57322331,50,+,CGCCTGGCCACCAGCTACATCGCCTACCTCATGGACCTGCTGGCCAAGGA,"Exon (Hand2-201/Hand2, exon 1 of 2)",8,57320983,57324633,3651,1,Hand2-201,1347,Hand2-201,Hand2,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,9,15111,ENSMUSG00000038193,mapped to different genes,8,57321382,57322432,1051,*,1051,124,0.737392959,0.868039644,0.117982874,1.08E-103,CpGisland,TRUE,U3,Pr-B
16342,cg12025941,0.0000534,0.00000495,10.7961336,2.81E-23,gain,yes,-0.00000579,0.00000841,-0.689338199,0.491126108,neg,ns,0.001630976,0.002462441,0.662341353,0.508244579,pos,ns,0.293927245,-0.0000934,0.0000847,-1.102975062,0.270893497,neg,ns,0.16493169,Rfx4,Rfx4_fiveUTR,10,84756446,84756495,84756446,84756447,50,+,CGCCTGTGCTGTCCATGGGAAGAGCATGCATTGTGGGTTACTGGAGGAAC,Promoter (<=1kb),10,84756062,84906144,150083,1,Rfx4-202,384,Rfx4-202,Rfx4,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,7,13,71137,ENSMUSG00000020037,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3846,cg00366136,-0.00000163,0.00000261,-0.625466352,0.532125196,loss,ns,-0.00000305,0.00000443,-0.689209713,0.491206836,neg,ns,-0.000283906,0.001296727,-0.218940144,0.826840749,neg,ns,0.082578128,-0.0000239,0.0000446,-0.535164902,0.592919512,neg,ns,0.936513586,Dmrt1,Dmrt1_Intron,19,25568520,25568569,25568568,25568569,50,+,ATAGTAAATCCAGATTGCGATGTGACATTACAGTATATCATTGCCCGGCG,"Intron (Dmrt1-201/Dmrt1, intron 4 of 4)",19,25505618,25604329,98712,1,Dmrt1-201,62902,Dmrt1-201;Dmrt1-202,Dmrt1;Dmrt1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,9,50796,ENSMUSG00000024837,conserved gene and region,19,25568478,25568596,119,*,119,10,0.529411765,1.202020202,0.084033613,0.000000335,CpGisland,TRUE,U11,Tr-P
21622,cg06874976,0.00000388,0.00000465,0.833660619,0.405114137,gain,ns,0.00000545,0.0000079,0.689086534,0.491284236,pos,ns,0.002734766,0.002314974,1.181337532,0.238374147,pos,ns,0.622740849,0.00000912,0.0000796,0.114573805,0.908857115,pos,ns,0.935276445,Cep112,Cep112_Exon,11,108606165,108606214,108606165,108606166,50,-,CGACAAGGATGTTCTGTTGATGAACTGTCCTCCTCATTGTCCAATCAGAT,"Exon (Cep112-213/Cep112, exon 20 of 27)",11,108425192,108860615,435424,1,Cep112-213,180973,Cep112-213;Cep112-201;Cep112-206;Cep112-216;Cep112-208;Cep112-211;Cep112-218,Cep112;Cep112;Cep112;Cep112;Cep112;Cep112;Cep112,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,9,76380,ENSMUSG00000020728,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24752,cg24158346,0.0000206,0.00000597,3.452644477,0.000632274,gain,ns,0.00000699,0.0000101,0.68907941,0.491288713,pos,ns,0.009757831,0.002971877,3.283389615,0.001142931,pos,ns,2.941980064,-0.000327574,0.000102203,-3.205141823,0.001490643,neg,ns,0.104284936,Spryd4,Spryd4_Exon,10,128211145,128211194,128211145,128211146,50,-,CGGGACATGTCCACATCTGCCACTCCTATCCGGAACTGCTGGGAGCGCTT,Promoter (<=1kb),10,128209908,128211807,1900,2,Spryd4-201,613,Gls2-201;Gls2-208;Gls2-211;Gls2-205;Gls2-209;Gls2-207;Gls2-204;Spryd4-201,Gls2;Gls2;Gls2;Gls2;Gls2;Gls2;Gls2;Spryd4,0;0;0;0;7462;7381;4220;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,66701,ENSMUSG00000051346,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9059,cg03670761,-0.0000144,0.00000442,-3.270306998,0.001195257,loss,ns,-0.00000517,0.0000075,-0.688983635,0.491348899,neg,ns,-0.004400821,0.002197953,-2.002236184,0.046130124,neg,ns,1.336015376,-0.0000403,0.0000756,-0.533126212,0.594328201,neg,ns,0.053777413,Irf2,Irf2_fiveUTR,8,46739783,46739832,46739831,46739832,50,-,TGGACTGTTCTCAGGCAAGCCGGGGAGTAACTTTTAGTTTTGCTCCTGCG,Promoter (<=1kb),8,46739784,46837798,98015,1,Irf2-202,0,Irf2-201;Irf2-205;Irf2-210;Irf2-202;Irf2-204;Irf2-203,Irf2;Irf2;Irf2;Irf2;Irf2;Irf2,0;0;0;0;-196;-434,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,4,16363,ENSMUSG00000031627,conserved gene and region,8,46739336,46739847,512,*,512,41,0.642578125,0.776331361,0.080078125,2.50E-27,CpGisland,TRUE,U1,Pr-A
18704,cg05737629,-0.00000353,0.00000382,-0.924357354,0.356019244,loss,ns,-0.00000447,0.00000649,-0.688859218,0.49142709,neg,ns,-0.001222224,0.001902369,-0.642474598,0.521039936,neg,ns,0.283128989,-0.0000266,0.0000654,-0.406685752,0.684519436,neg,ns,0.972674484,Dscam,Dscam_Exon,16,96772402,96772451,96772450,96772451,50,+,TACTTTTAACCGTGAGGTACATGGACTTGCTGACGTCTGCGCCCACATCG,"Exon (Gm32509-201/Gm32509-201, exon 5 of 5)",16,96590840,97170752,579913,2,Dscam-201,398301,Dscam-201,Dscam,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,12,13508,ENSMUSG00000050272,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8372,cg11514832,-0.0000231,0.00000946,-2.437698865,0.015342833,loss,ns,0.0000111,0.0000161,0.688704516,0.491524323,pos,ns,-0.004008516,0.004708846,-0.851273657,0.395274442,neg,ns,0.403101266,0.0000755,0.000161937,0.466069574,0.641493011,pos,ns,0.745541072,Zeb2,Zeb2_Intron,2,45058415,45058464,45058463,45058464,50,+,TGACAGCACTAACTCTCCAGGGCAGAACTTTCCAGTCAAGTGGATCAACG,"Intron (Zeb2-212/Zeb2, intron 3 of 10)",2,44983632,45117395,133764,2,Zeb2-212,58931,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-218;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23828,cg09609922,-0.00000123,0.00000085,-1.446850751,0.14894912,loss,ns,0.000000994,0.00000144,0.688487674,0.491660629,pos,ns,0.000498905,0.000422985,1.179485414,0.23910933,pos,ns,0.621403477,0.00000292,0.0000145,0.201018111,0.840816239,pos,ns,0.981152627,Eif1b,Eif1b_Exon,9,120494139,120494188,120494187,120494188,50,-,TTACTCCCGGCAGGGACTGAGGATTACATTCATATAAGAATCCAGCAACG,"Exon (Eif1b-202/Eif1b, exon 3 of 4)",9,120492232,120494640,2409,1,Eif1b-202,1907,Eif1b-202;Eif1b-201,Eif1b;Eif1b,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,68969,ENSMUSG00000006941,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25781,cg19529390,0.0000372,0.00000598,6.225903298,1.55E-09,gain,yes,0.00000699,0.0000102,0.688486334,0.491661471,pos,ns,0.011374417,0.002976239,3.821742189,0.000160132,pos,ns,3.795522224,-0.000161196,0.000102353,-1.574912029,0.11629671,neg,ns,0.10691635,Uncx,Uncx_Exon,5,139541337,139541386,139541385,139541386,50,-,GGTAACAATTATCAGGGCCTCTGTTGAAAGATTCGGGTTATTACAACACG,Promoter (2-3kb),5,139543494,139548179,4686,1,Uncx-201,-2157,Uncx-201;Uncx-202,Uncx;Uncx,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,88,22255,ENSMUSG00000029546,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
19676,cg06663472,-0.00000683,0.00000328,-2.083891327,0.03798875,loss,ns,-0.00000384,0.00000557,-0.688350514,0.491746858,neg,ns,-0.000583698,0.001632244,-0.357604602,0.720882578,neg,ns,0.14213547,0.00000189,0.0000561,0.033628394,0.973195121,pos,ns,0.920184042,Pou6f1,Pou6f1_Exon,15,100586743,100586792,100586743,100586744,50,+,CGGCCAGCCCCTGCTGACCAGCCACTTGACCTGCAATACTGATGGGGATA,"Exon (Pou6f1-202/Pou6f1, exon 5 of 11)",15,100575318,100591934,16617,2,Pou6f1-203,5142,Pou6f1-204;Pou6f1-203;Pou6f1-202;Pou6f1-201;Pou6f1-205;Pou6f1-206;Pou6f1-211;Pou6f1-210;Pou6f1-207;Pou6f1-209,Pou6f1;Pou6f1;Pou6f1;Pou6f1;Pou6f1;Pou6f1;Pou6f1;Pou6f1;Pou6f1;Pou6f1,-378;0;0;0;0;0;-2531;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,4,19009,ENSMUSG00000009739,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26497,cg24207053,0.00000622,0.0000156,0.399031654,0.690144618,gain,ns,-0.0000182,0.0000265,-0.688214921,0.491832111,neg,ns,0.004827151,0.00775221,0.622680624,0.53395219,pos,ns,0.272497628,0.000282889,0.000266598,1.061106371,0.289467544,pos,ns,0.480191069,Casz1,Casz1_Intron,4,148808980,148809029,148809028,148809029,50,+,CTAATTATTGTGTTGTTTTCAGAGCAAATATGTCATATCCATGGCGACCG,"Intron (Casz1-201/Casz1, intron 1 of 15)",4,148804429,148945129,140701,1,Casz1-201,4551,Casz1-201;Casz1-202;Casz1-203,Casz1;Casz1;Casz1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,94,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
1236,cg19660203,0.0000906,0.0000146,6.185517106,1.95E-09,gain,yes,0.0000171,0.0000249,0.688094185,0.491908028,pos,ns,0.03451369,0.007289957,4.734416413,0.00000335,pos,ns,5.475376387,-0.001002453,0.000250701,-3.998599517,0.0000797,neg,ns,0.149577675,Bcor,Bcor_Intron,X,12088776,12088825,12088776,12088777,50,+,CGGCTTTTGCAGTTTTAATGCTCTGCTTTCGGCCTGGCACCATTACGCTA,"Intron (Bcor-201/Bcor, intron 1 of 13)",20,12036743,12160355,123613,2,Bcor-201,71530,Bcor-201;Bcor-207;Bcor-205,Bcor;Bcor;Bcor,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,56,74,71458,ENSMUSG00000040363,conserved gene and region,X,12088503,12088852,350,*,350,49,0.742857143,1.015754561,0.14,1.60E-45,CpGisland,TRUE,NA,NRS
4579,cg20748408,0.0000965,0.00000889,10.85657515,1.74E-23,gain,yes,-0.0000104,0.0000151,-0.688088955,0.491911317,neg,ns,0.006695751,0.004425475,1.513001565,0.131298057,pos,ns,0.881741701,0.00000686,0.000152192,0.045096596,0.96405935,pos,ns,0.645643661,Urm1,Urm1_Intergenic_downstream,2,29846369,29846418,29846369,29846370,50,-,CGGAGAAAGGGGCTCGGCTGCAATTGGTACTGGATTTGAATAACGCCACG,Downstream (1-2kb),2,29841648,29844064,2417,1,Urm1-202,4770,Urm1-205;Urm1-206;Urm1-201;Urm1-204;Urm1-202,Urm1;Urm1;Urm1;Urm1;Urm1,26294;19027;19027;19008;4721,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,6,10,68205,ENSMUSG00000069020,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24322,cg18444545,0.0000199,0.00000373,5.325371435,0.000000194,gain,yes,-0.00000436,0.00000634,-0.688063674,0.491927214,neg,ns,0.003512305,0.001857328,1.891053272,0.059549448,pos,ns,1.22512226,-0.0000594,0.0000639,-0.930690078,0.352738099,neg,ns,0.045077319,Pou3f1,Pou3f1_threeUTR,4,124659638,124659687,124659638,124659639,50,+,CGGTTTTTATTTATTCGTGGAGCCTCTCGGCTCCTGGGGTCCTTCTAACT,3' UTR,4,124656807,124660655,3849,1,Pou3f1-201,2831,Pou3f1-201,Pou3f1,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,85,18991,ENSMUSG00000090125,conserved gene and region,4,124659224,124659760,537,*,537,47,0.648044693,0.8390625,0.087523278,4.32E-33,CpGisland,TRUE,U3,Pr-B
9590,cg13922115,-0.0000576,0.000017,-3.390609096,0.000787674,loss,ns,-0.0000199,0.0000289,-0.688026479,0.491950604,neg,ns,0.016189267,0.008461128,1.913369775,0.056621643,pos,ns,1.247017534,-0.000655366,0.000290978,-2.25229045,0.025003325,neg,ns,0.743680558,Ippk,Ippk_threeUTR,13,49449258,49449307,49449258,49449259,50,+,CGGGGTTACCGAAGGGCTGTCTTCTGTACAAAACCCTCCAGGTGCAGATG,3' UTR,13,49421249,49464573,43325,1,Ippk-202,28009,Ippk-202;Ippk-203;Ippk-201,Ippk;Ippk;Ippk,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,75678,ENSMUSG00000021385,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19178,cg07430406,-0.0000104,0.00000434,-2.390670403,0.017414156,loss,ns,-0.00000507,0.00000737,-0.687980669,0.491979412,neg,ns,0.000280418,0.00215851,0.129912974,0.896719534,pos,ns,0.047343369,-0.000195723,0.0000742,-2.636669377,0.008794161,neg,ns,0.80483503,Thra,Thra_Exon,11,98764370,98764419,98764418,98764419,50,+,AACATTCCGCACTTCTGGCCCAAGCTGCTGATGAAGGTGACTGACCTCCG,"Exon (Thra-201/Thra, exon 9 of 10)",11,98741811,98769006,27196,1,Thra-201,22559,Nr1d1-201;Nr1d1-202;Thra-201;Thra-202;Thra-203,Nr1d1;Nr1d1;Thra;Thra;Thra,0;6007;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,13,18,21833,ENSMUSG00000058756,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7714,cg05700957,2.64E-08,0.00000384,0.006862763,0.994528764,gain,ns,0.00000449,0.00000652,0.687853591,0.49205933,pos,ns,-0.001246504,0.001911112,-0.652240244,0.514729525,neg,ns,0.28842092,-0.000108992,0.0000657,-1.658353131,0.098257656,neg,ns,0.912593347,Arhgap15,Arhgap15_Intron,2,43929214,43929263,43929214,43929215,50,+,CGGGGGAATACATATTTCACCCAGTAGCAAGACACCCAACTGCTGCTACA,"Intron (Arhgap15-203/Arhgap15, intron 6 of 14)",2,43748824,44395953,647130,1,Arhgap15-203,180390,Arhgap15-203;Arhgap15-202;Arhgap15-201,Arhgap15;Arhgap15;Arhgap15,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,72,78,76117,ENSMUSG00000049744,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24229,cg01488040,-0.00000677,0.00000593,-1.141798538,0.254418949,loss,ns,0.00000693,0.0000101,0.68763808,0.492194879,pos,ns,-0.001929675,0.002950974,-0.653911232,0.51365377,neg,ns,0.28932952,0.000109296,0.000101484,1.076983667,0.282324949,pos,ns,0.845693356,Hs3st4,Hs3st4_Intron,7,124039298,124039347,124039346,124039347,50,+,TTTCTCATAAACTGTTTAATTGTTTGCTTCTGGAAACAATTAGACTGACG,"Intron (Hs3st4-201/Hs3st4, intron 1 of 1)",7,123982869,124398989,416121,1,Hs3st4-201,56429,Hs3st4-201,Hs3st4,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,3,628779,ENSMUSG00000078591,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18272,cg21201320,0.000000489,0.00000283,0.172732109,0.862974724,gain,ns,-0.00000331,0.00000481,-0.687543575,0.492254326,neg,ns,-0.00049648,0.00140889,-0.352390938,0.72478455,neg,ns,0.139791073,-0.0000493,0.0000485,-1.018509019,0.309230329,neg,ns,0.920304279,Xylt2,Xylt2_Exon,11,94667219,94667268,94667219,94667220,50,-,CGTCACCAGGTAGCCCTGGAAATGGTCGTCATAGAAATACAGGTGCACGC,"Exon (Xylt2-201/Xylt2, exon 9 of 11)",11,94663851,94677515,13665,2,Xylt2-201,10247,Xylt2-201;Xylt2-204;Xylt2-203;Xylt2-205;Xylt2-202,Xylt2;Xylt2;Xylt2;Xylt2;Xylt2,0;0;0;0;10139,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,217119,ENSMUSG00000020868,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
732,cg21086960,0.00000425,0.00000238,1.784499758,0.075320347,gain,ns,-0.00000278,0.00000405,-0.687538787,0.492257337,neg,ns,0.002447284,0.001185527,2.064300805,0.039820844,pos,ns,1.399889537,-0.00003,0.0000408,-0.735287103,0.462720568,neg,ns,0.947573088,Nipbl,Nipbl_Exon,15,8351666,8351715,8351714,8351715,50,-,CTGATGAAGATCAATGCTAACCATTAATGCTGGCCTTGACCCATTTCCCG,"Exon (Nipbl-201/Nipbl, exon 10 of 47)",15,8290617,8444463,153847,2,Nipbl-201,92748,Nipbl-201,Nipbl,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,19,36,71175,ENSMUSG00000022141,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5488,cg03773588,-0.0000135,0.00000711,-1.896280017,0.058852645,loss,ns,-0.00000831,0.0000121,-0.687444217,0.49231683,neg,ns,-0.011231062,0.003540396,-3.172261672,0.001664107,neg,ns,2.778818799,0.000255023,0.000121754,2.0945759,0.037020242,pos,ns,0.813644864,Pbx3,Pbx3_Intron,2,34088711,34088760,34088711,34088712,50,-,CGTTAGAACATTCATTGAAGTAAGTGAGGAATCCATCACAGGCTGACAGC,"Intron (C230014O12Rik-201/C230014O12Rik-201, intron 1 of 3)",2,34172873,34288852,115980,2,Pbx3-210,200141,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,82,18516,ENSMUSG00000038718,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10034,cg18568853,0.00000675,0.00000643,1.050882938,0.294130865,gain,ns,0.0000075,0.0000109,0.687276961,0.492422056,pos,ns,0.000230807,0.003197899,0.072174537,0.942509552,pos,ns,0.02571424,-0.00021193,0.000109975,-1.927064571,0.054885288,neg,ns,0.860714442,Gm19197,Gm19197_Intron,17,52061244,52061293,52061244,52061245,50,+,CGAAAATTCAAGTGTCATCTCAATTTGGGCTCATTCAGATCCTGTATTTT,"Intron (Gm19585-204/Gm19585-204, intron 2 of 2)",17,52008967,52009569,603,1,Gm19197-201,52277,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,11,100418416,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27558,cg13874275,0.000000836,0.00000788,0.106051503,0.915610081,gain,ns,-0.0000092,0.0000134,-0.687106037,0.492529602,neg,ns,0.003000882,0.003922353,0.76507177,0.444810849,pos,ns,0.351824629,-0.000224998,0.000134889,-1.668020616,0.096321365,neg,ns,0.843338563,Tshz2,Tshz2_threeUTR,2,169912922,169912971,169912922,169912923,50,-,CGTGCATAGTTAATATTAAAAATGTACTAACAGTGTGGCTGAGAAATCAA,3' UTR,2,169633013,169913093,280081,1,Tshz2-202,279909,Tshz2-202;Tshz2-203;Tshz2-205;Tshz2-204,Tshz2;Tshz2;Tshz2;Tshz2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,8,30,228911,ENSMUSG00000047907,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10811,cg05014952,-0.00000132,0.000000833,-1.585401965,0.113894553,loss,ns,-0.000000973,0.00000142,-0.68704555,0.492567664,neg,ns,0.000209661,0.000414705,0.505566247,0.613520455,pos,ns,0.212170953,-0.00000989,0.0000143,-0.693527016,0.488498184,neg,ns,0.018204558,Nfkbia,Nfkbia_Promoter,12,55491918,55491967,55491918,55491919,50,-,CGAGGTTATTATGAGCTGAGTGTTCCTGGCAGGCGCCCAGGGACTTTCCG,Promoter (<=1kb),12,55489410,55492647,3238,2,Nfkbia-201,680,Nfkbia-201;Nfkbia-202,Nfkbia;Nfkbia,0;-108,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,3,3,18035,ENSMUSG00000021025,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
24466,cg17710952,0.000000668,0.00000234,0.285236191,0.77565367,gain,ns,-0.00000273,0.00000398,-0.686932247,0.492638965,neg,ns,-0.001287321,0.001165111,-1.104891409,0.270063455,neg,ns,0.568534181,0.0000375,0.0000401,0.935406635,0.350306863,pos,ns,0.942381681,Atp2a1,Atp2a1_Exon,7,126446924,126446973,126446972,126446973,50,-,GGCAGTGAGATCTTGAGGACCATGAGCCACTGGGTGAGGTCCAGGGCCCG,"Exon (Atp2a1-201/Atp2a1, exon 21 of 23)",7,126445858,126463108,17251,2,Atp2a1-201,16135,Atp2a1-201;Atp2a1-202;Rabep2-209;Rabep2-202;Rabep2-201;Rabep2-206;Rabep2-204,Atp2a1;Atp2a1;Rabep2;Rabep2;Rabep2;Rabep2;Rabep2,0;0;18165;17858;17484;6631;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,11937,ENSMUSG00000030730,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19013,cg11927671,-0.000000922,0.0000083,-0.111131055,0.911584339,loss,ns,0.00000968,0.0000141,0.686926444,0.492642617,pos,ns,0.012744325,0.00413025,3.085606422,0.002214565,pos,ns,2.654711568,0.0002109,0.000142039,1.48480539,0.138611503,pos,ns,0.300754132,Prdm8,Prdm8_Intron,5,98169927,98169976,98169927,98169928,50,-,CGATATTGCCCTTTAGATGCCTCTTCCGTGTTTTGTTTTACAATTGTTGT,"Intron (Prdm8-202/Prdm8, intron 1 of 4)",5,98167198,98187454,20257,1,Prdm8-202,2729,Prdm8-202,Prdm8,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,10,77630,ENSMUSG00000035456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
1569,cg25383609,-0.0000218,0.00000576,-3.784505305,0.000184865,loss,ns,0.00000672,0.00000978,0.686846783,0.492692751,pos,ns,0.002078159,0.002864419,0.725507923,0.468687813,pos,ns,0.329116339,-0.000231276,0.0000985,-2.347812053,0.019512462,neg,ns,0.88159057,Zfp521,Zfp521_Intron,18,13763543,13763592,13763543,13763544,50,-,CGGATCATTAAACAGTAGTGTGAAACCAGGGAAATTAACCAGCTGGTGTG,"Intron (Zfp521-201/Zfp521, intron 5 of 7)",18,13687013,13972787,285775,2,Zfp521-201,209195,Zfp521-201;Zfp521-205;Zfp521-204,Zfp521;Zfp521;Zfp521,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,81,225207,ENSMUSG00000024420,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2112,cg00838404,0.000145348,0.0000294,4.944365201,0.00000125,gain,yes,-0.0000343,0.0000499,-0.686764495,0.492744541,neg,ns,0.016104398,0.01463102,1.10070236,0.271880165,pos,ns,0.565622475,0.000197649,0.00050316,0.392815654,0.694725616,pos,ns,0.61118601,Skida1,Skida1_Promoter,2,18050718,18050767,18050766,18050767,50,+,GAAGGATCATTGAATGGATCTCGTGATATTTCAGGCTTTAAACGTAACCG,Promoter (1-2kb),2,18044083,18049051,4969,2,Skida1-202,-1667,Mllt10-201;Skida1-202;Skida1-201;Skida1-203;Skida1-204,Mllt10;Skida1;Skida1;Skida1;Skida1,0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,12,31,72668,ENSMUSG00000054074,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14166,cg13719194,-0.00000559,0.00000195,-2.869149676,0.004398406,loss,ns,0.00000227,0.00000331,0.686763475,0.492745183,pos,ns,-0.001762508,0.000970248,-1.816554379,0.070251034,neg,ns,1.153347276,-0.0000197,0.0000334,-0.590421724,0.555338109,neg,ns,0.039114059,Pafah1b1,Pafah1b1_fiveUTR,11,74724335,74724384,74724335,74724336,50,-,CGCTCCAGCTCCGTCTGTCACAGGAGCTGCCCCAACGCCCTGACGTCACC,Promoter (<=1kb),11,74673949,74724335,50387,2,Pafah1b1-203,0,Pafah1b1-203;Pafah1b1-201;Pafah1b1-202;Pafah1b1-205;Pafah1b1-204,Pafah1b1;Pafah1b1;Pafah1b1;Pafah1b1;Pafah1b1,0;0;0;0;-1164,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,5,18472,ENSMUSG00000020745,conserved gene and region,11,74724121,74724562,442,*,442,62,0.773755656,0.943501463,0.140271493,1.51E-57,CpGisland,TRUE,U1,Pr-A
18346,cg13866150,0.00000501,0.00000169,2.961831371,0.003294564,gain,ns,-0.00000197,0.00000287,-0.686748785,0.492754429,neg,ns,-0.0000159,0.000841482,-0.018885739,0.984944406,neg,ns,0.006588282,0.00001,0.0000289,0.345783406,0.729740036,pos,ns,0.013839487,Otp,Otp_Promoter,13,94868984,94869033,94868984,94868985,50,+,CGTGCAACCGCTCCATCTCATTAAGGAAATCGCTCTTCAATGCTGATTAT,Promoter (6-7kb),13,94875602,94885130,9529,1,Otp-201,-6569,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,27,34,18420,ENSMUSG00000021685,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
4527,cg10924533,-0.00000334,0.00000232,-1.438041846,0.151430896,loss,ns,0.00000271,0.00000394,0.686540431,0.492885576,pos,ns,0.002578411,0.001154439,2.233476322,0.026230785,pos,ns,1.581188705,-0.000055,0.0000397,-1.384253204,0.1672766,neg,ns,0.942765975,Ccdc88a,Ccdc88a_Exon,11,29456461,29456510,29456461,29456462,50,-,CGAGATATGGATAGAAAAAAGATTGAAGAATTAATGGAAGAAAATATGAC,Promoter (<=1kb),11,29456496,29461228,4733,1,Ccdc88a-204,0,Ccdc88a-201;Ccdc88a-208;Ccdc88a-204,Ccdc88a;Ccdc88a;Ccdc88a,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,6,108686,ENSMUSG00000032740,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17982,cg06388710,-0.0000258,0.0000104,-2.467079823,0.01416225,loss,ns,-0.0000122,0.0000177,-0.686528936,0.492892811,neg,ns,-0.006582565,0.00519572,-1.266920732,0.206134626,neg,ns,0.685849051,-0.000102721,0.00017868,-0.574885913,0.565785436,neg,ns,0.794886673,Pcdh9,Pcdh9_Intron,14,93127188,93127237,93127236,93127237,50,+,TGCCTTTCCCCTCTCCTGAGCAGATGGTTGGCTAAAACTCACTTCACACG,"Intron (Pcdh9-208/Pcdh9, intron 4 of 4)",14,93013410,93890669,877260,2,Pcdh9-208,763432,Pcdh9-208;Pcdh9-204;Pcdh9-202;Pcdh9-207;Pcdh9-201,Pcdh9;Pcdh9;Pcdh9;Pcdh9;Pcdh9,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,10,211712,ENSMUSG00000055421,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18825,cg24609185,0.0000207,0.0000049,4.230616202,0.0000307,gain,ns,-0.00000571,0.00000832,-0.686478537,0.492924538,neg,ns,0.000352145,0.002437062,0.144495651,0.885202984,pos,ns,0.052957131,0.0000913,0.0000838,1.089878711,0.276613038,pos,ns,0.772033865,E130114P18Rik,E130114P18Rik_Intron,4,97582005,97582054,97582053,97582054,50,+,GGAAAGCTTCCGACGGCTCCATCAAATGGCAGCTCTGCTACGACATCTCG,"Intron (E130114P18Rik-207/E130114P18Rik, intron 1 of 4)",4,97568133,97584596,16464,2,E130114P18Rik-207,2542,E130114P18Rik-207;E130114P18Rik-201;E130114P18Rik-203;E130114P18Rik-202;E130114P18Rik-206;E130114P18Rik-204;E130114P18Rik-209;E130114P18Rik-208,E130114P18Rik;E130114P18Rik;E130114P18Rik;E130114P18Rik;E130114P18Rik;E130114P18Rik;E130114P18Rik;E130114P18Rik,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,24,319865,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15628,cg01599973,-0.0000116,0.00000538,-2.160542059,0.031496614,loss,ns,0.00000628,0.00000914,0.686408192,0.492968822,pos,ns,0.006903045,0.002678405,2.577296786,0.010419554,pos,ns,1.982150866,-0.000262329,0.0000921,-2.847987684,0.004693619,neg,ns,0.88700147,Nfib,Nfib_Intron,4,82337124,82337173,82337124,82337125,50,-,CGTCAGCCCTTAATTAAACTGTTGTTCACTTCCAAAGAACCTTAGGAAAC,"Intron (Nfib-201/Nfib, intron 6 of 11)",4,82290173,82505308,215136,2,Nfib-201,168135,Nfib-201;Nfib-203;Nfib-202;Nfib-205;Nfib-206;Nfib-204;Nfib-207;Nfib-209,Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,66,18028,ENSMUSG00000008575,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3110,cg19755255,0.000031,0.0000116,2.659158595,0.008240548,gain,ns,0.0000136,0.0000198,0.686381581,0.492985575,pos,ns,0.017099355,0.005797618,2.949375857,0.00342647,pos,ns,2.46515312,-0.0000796,0.00019938,-0.399480555,0.689814231,neg,ns,0.240519771,Lrmda,Lrmda_Intron,14,22783328,22783377,22783328,22783329,50,-,CGACTGTAGGAAATGAGATATCCATCATAGGCTTGTGTTCCACCAGCTGC,"Intron (Lrmda-201/Lrmda, intron 5 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,763616,Lrmda-201;Lrmda-204;Lrmda-206,Lrmda;Lrmda;Lrmda,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10311,cg14282776,-0.0000116,0.00000329,-3.523939874,0.000489219,loss,ns,-0.00000383,0.00000558,-0.686320313,0.493024148,neg,ns,-0.001096168,0.001635422,-0.670266042,0.503187208,neg,ns,0.298270408,-0.0000673,0.0000562,-1.195967413,0.232623249,neg,ns,0.943508175,Jazf1,Jazf1_Intron,6,52778539,52778588,52778587,52778588,50,+,AACAGTGTAAAATAATATGTTGACAAGTCCTAATGCATTTACAAGCCCCG,"Intron (Jazf1-203/Jazf1, intron 3 of 4)",6,52768797,52909620,140824,2,Jazf1-203,131032,Jazf1-202;Jazf1-203;Jazf1-201,Jazf1;Jazf1;Jazf1,-230;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,231986,ENSMUSG00000063568,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9628,cg27412813,-0.00000286,0.0000031,-0.920747178,0.357898394,loss,ns,-0.00000362,0.00000527,-0.686312444,0.493029103,neg,ns,-0.004553689,0.00154456,-2.948212105,0.003439037,neg,ns,2.4635631,0.000155876,0.0000531,2.93456755,0.003589569,pos,ns,0.933380899,Nav2,Nav2_Exon,7,49585131,49585180,49585179,49585180,50,+,TTTCCATTCGCAGACATGTTGCTGGATGACACTGGTGAATGCTCGGCTCG,"Exon (Nav2-204/Nav2, exon 31 of 40)",7,48959097,49606821,647725,1,Nav2-204,626034,Nav2-204;Nav2-202;Nav2-216;Nav2-212;Nav2-205,Nav2;Nav2;Nav2;Nav2;Nav2,0;0;0;-64;-2237,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,7,78286,ENSMUSG00000052512,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7330,cg10893516,0.000135791,0.0000115,11.80716698,8.10E-27,gain,yes,-0.0000134,0.0000195,-0.686194867,0.49310313,neg,ns,0.018202606,0.005724042,3.180026484,0.001621537,pos,ns,2.790073245,-0.000203024,0.000196849,-1.031369581,0.303171514,neg,ns,0.138824887,Ptchd4,Ptchd4_Exon,17,42316662,42316711,42316710,42316711,50,-,GGAGCGCCTGCGAGCTGGATCTGGTGGAGGATGCTGCGGCAGGTGCTTCG,Promoter (<=1kb),17,42315947,42505077,189131,1,Ptchd4-201,715,Ptchd4-201;Ptchd4-203;Ptchd4-202,Ptchd4;Ptchd4;Ptchd4,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,9,627626,ENSMUSG00000042256,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7409,cg12944654,0.0000372,0.0000118,3.149145245,0.001797034,gain,ns,0.0000138,0.0000201,0.686188776,0.493106965,pos,ns,-0.008993818,0.005881028,-1.529293576,0.12721141,neg,ns,0.895473933,0.000621936,0.000202248,3.075115023,0.002291543,pos,ns,0.68306196,Nr2e1,Nr2e1_Exon,10,42567904,42567953,42567904,42567905,50,+,CGAGCCACCACCTCTTGTAAAGCCTGTATTTCAGATATGATCTTGTTCAG,"Exon (Nr2e1-201/Nr2e1, exon 7 of 9)",10,42561963,42583632,21670,2,Nr2e1-201,15679,Nr2e1-201;Nr2e1-202;Nr2e1-203;Nr2e1-204,Nr2e1;Nr2e1;Nr2e1;Nr2e1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,11,21907,ENSMUSG00000019803,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
25513,cg19279986,-0.00000662,0.00000369,-1.791910064,0.074122532,loss,ns,0.00000431,0.00000627,0.686150931,0.493130794,pos,ns,-0.000231357,0.001838309,-0.125853317,0.899929618,neg,ns,0.045791455,-0.0000397,0.0000632,-0.627245015,0.530960343,neg,ns,0.031799988,Zbtb40,Zbtb40_fiveUTR,4,137048657,137048706,137048657,137048658,50,+,CGATTCAAACTGCCGTTCTTTATTGACAGCGCCATAGAGGACACGAACAC,Promoter (<=1kb),4,136979732,137048695,68964,2,Zbtb40-201,0,Zbtb40-201;Zbtb40-202,Zbtb40;Zbtb40,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,3,230848,ENSMUSG00000060862,conserved gene and region,4,137048342,137048880,539,*,539,57,0.6716141,0.937791887,0.105751392,5.55E-45,CpGisland,TRUE,U2,Pr-W
23830,cg07491547,0.00000746,0.00000207,3.604687064,0.00036402,gain,ns,-0.00000241,0.00000351,-0.686075207,0.493178476,neg,ns,0.000638065,0.001029415,0.619832808,0.535823188,pos,ns,0.270978496,-0.0000399,0.0000354,-1.127023196,0.260604284,neg,ns,0.952104152,Zfp106,Zfp106_Exon,2,120513630,120513679,120513678,120513679,50,+,ATGGTCATACACATAATCATGTCTTTGTGTCCTCCATAAACTTGTAATCG,"Exon (Zfp106-201/Zfp106, exon 19 of 22)",2,120506820,120563807,56988,2,Zfp106-201,50128,Zfp106-201;Zfp106-211;Zfp106-202,Zfp106;Zfp106;Zfp106,0;0;-765,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,20402,ENSMUSG00000027288,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27492,cg08900022,0.00000541,0.00000357,1.513653097,0.131132688,gain,ns,-0.00000417,0.00000607,-0.686072274,0.493180323,neg,ns,0.000477639,0.001778689,0.268534393,0.788466618,pos,ns,0.103216689,-0.0000669,0.0000612,-1.093839823,0.274874451,neg,ns,0.040348495,Pbx1,Pbx1_fiveUTR,1,168431886,168431935,168431886,168431887,50,-,CGGCGCTTAAATCTGTGGCTTAATCCTTTTGCAAATATGCATTGATCGGG,Promoter (<=1kb),1,168153542,168431897,278356,2,Pbx1-205,0,Pbx1-208;Pbx1-205;Pbx1-206;Pbx1-201;Pbx1-202;Pbx1-204;Pbx1-207,Pbx1;Pbx1;Pbx1;Pbx1;Pbx1;Pbx1;Pbx1,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,84,18514,ENSMUSG00000052534,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
12920,cg25961903,-0.00000917,0.00000443,-2.068462117,0.039425501,loss,ns,-0.00000517,0.00000753,-0.686063696,0.493185725,neg,ns,-0.005237732,0.002206437,-2.373842017,0.018213104,neg,ns,1.739616031,0.0000803,0.0000759,1.057635375,0.291045163,pos,ns,0.058976605,Arid5b,Arid5b_Promoter,10,68279176,68279225,68279224,68279225,50,-,GACCTGCTTGTATATGTCTAATATAAAGAACATTTCCTGCAGAGATTCCG,Promoter (<=1kb),10,68092520,68278740,186221,2,Arid5b-204,-485,Arid5b-204;Arid5b-201;Arid5b-202,Arid5b;Arid5b;Arid5b,0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,16,33,71371,ENSMUSG00000019947,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16584,cg12199330,0.00000365,0.0000153,0.237900307,0.81211558,gain,ns,0.0000179,0.0000261,0.686027839,0.493208303,pos,ns,0.021192191,0.007638501,2.774391276,0.005866005,pos,ns,2.231657598,-0.000312217,0.000262687,-1.18855022,0.23552641,neg,ns,0.384916512,Gm5231,Gm5231_Intergenic_upstream,17,85563169,85563218,85563217,85563218,50,+,ACCATAACAAAATGGAGCTGGTGCCAGATTCTCACTGATAACACCTCTCG,Distal Intergenic,17,85541625,85542703,1079,2,Gm5231-201,-20466,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,11,383282,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13703,cg22613390,0.0000775,0.0000258,3.008403366,0.002841496,gain,ns,0.00003,0.0000438,0.685997068,0.493227681,pos,ns,0.05789986,0.01282944,4.51304643,0.00000908,pos,ns,5.041684876,-0.001617903,0.000441203,-3.66702237,0.000288683,neg,ns,0.420276272,Tle1,Tle1_Intron,4,72185444,72185493,72185444,72185445,50,+,CGTGTCAAGCTAAGATTCAATTCAGGTAAGTGCCACTGCCAAATTTTCTT,"Intron (Tle1-203/Tle1, intron 4 of 19)",4,72117142,72200919,83778,2,Tle1-203,15426,Tle1-203;Tle1-202;Tle1-204;Tle1-207;Tle1-201;Tle1-205;Tle1-209;Tle1-208,Tle1;Tle1;Tle1;Tle1;Tle1;Tle1;Tle1;Tle1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,20,21885,ENSMUSG00000008305,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22881,cg15306097,-0.000000911,0.00000127,-0.71641399,0.47427511,loss,ns,0.00000148,0.00000216,0.685884196,0.493298762,pos,ns,-0.000302058,0.000633055,-0.477143902,0.633595855,neg,ns,0.198187673,-0.00000451,0.0000218,-0.207294097,0.835916286,neg,ns,0.039881494,Meis2,Meis2_fiveUTR,2,116064080,116064129,116064080,116064081,50,-,CGTGAAAGTTACCAGAAACATTATTTAGCAGCGGATTCCCTGCGTCCTTG,Promoter (<=1kb),2,115863064,116065047,201984,2,Meis2-201,918,Meis2-201;Meis2-203;Meis2-205;Meis2-206;Meis2-204;Meis2-202;Meis2-213;Meis2-210;Meis2-209,Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2,0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,11,97,17536,ENSMUSG00000027210,conserved gene but different region,2,116063902,116064314,413,*,413,37,0.598062954,1.006653491,0.089588378,1.45E-26,CpGisland,TRUE,U1,Pr-A
5751,cg25390320,0.0000655,0.00000741,8.839058815,7.39E-17,gain,yes,-0.00000863,0.0000126,-0.685864139,0.493311393,neg,ns,0.015299081,0.003688306,4.14799636,0.0000434,pos,ns,4.362945888,-0.000392071,0.000126841,-3.091057262,0.002175517,neg,ns,0.140598251,Kctd15,Kctd15_Exon,7,34652969,34653018,34653017,34653018,50,-,TCGGCTCTCTGGGGGTGATTAAACTGGCTGAGCTGCGGCAGCTTGAGACG,"Exon (Kctd15-204/Kctd15, exon 1 of 2)",7,34639014,34654398,15385,2,Kctd15-202,1380,Kctd15-202;Kctd15-203;Kctd15-201;Kctd15-206;Kctd15-208;Kctd15-204;Kctd15-205;Kctd15-207,Kctd15;Kctd15;Kctd15;Kctd15;Kctd15;Kctd15;Kctd15;Kctd15,0;0;0;-4225;0;0;0;3714,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,25,233107,ENSMUSG00000030499,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
27587,cg03876095,-0.00000247,0.00000507,-0.487219113,0.6264474,loss,ns,0.0000059,0.00000861,0.68582494,0.49333608,pos,ns,0.006221589,0.00252098,2.467925063,0.014129513,pos,ns,1.849872815,-0.00020047,0.0000867,-2.312319563,0.021414951,neg,ns,0.91797713,Uhmk1,Uhmk1_Exon,1,170208692,170208741,170208692,170208693,50,-,CGGCATTCACCACTGCTTTACTGGCAAATATGTGATCAATAATAGCAGAA,"Exon (Uhmk1-203/Uhmk1, exon 4 of 8)",1,170193420,170214734,21315,2,Uhmk1-203,5993,Uhmk1-203;Uhmk1-201;Uhmk1-202,Uhmk1;Uhmk1;Uhmk1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,16589,ENSMUSG00000026667,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5622,cg14691387,0.0000117,0.00000873,1.336310235,0.182427921,gain,ns,0.0000102,0.0000148,0.685637405,0.493454197,pos,ns,0.00445833,0.004346102,1.025822809,0.305774894,pos,ns,0.514598176,-0.000134681,0.000149462,-0.90110476,0.368232147,neg,ns,0.82844516,Hdac9,Hdac9_Intron,12,34360273,34360322,34360273,34360274,50,-,CGAAGGCTGGCACGTGATTGGGCTAATTAAATTAAATAGCAGGAAACAGC,"Intron (Hdac9-205/Hdac9, intron 11 of 24)",12,34047580,34528328,480749,2,Hdac9-205,168006,Hdac9-205;Hdac9-204;Hdac9-206;Hdac9-210;Hdac9-207,Hdac9;Hdac9;Hdac9;Hdac9;Hdac9,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,19,31,79221,ENSMUSG00000004698,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9692,cg02354294,-0.0000103,0.00000662,-1.562601566,0.119166581,loss,ns,-0.00000771,0.0000113,-0.685609046,0.49347206,neg,ns,-0.005238893,0.003296434,-1.589260751,0.113020846,neg,ns,0.946841447,0.0000707,0.000113364,0.623356571,0.533508584,pos,ns,0.880537574,Gm7481,Gm7481_Intergenic_upstream,12,50112064,50112113,50112064,50112065,50,+,CGCAGTTGGCTGTCCAAGGACCCTGATGCCAAATTGCGGAGGATATTCTT,Distal Intergenic,12,49840757,49841751,995,2,Gm7481-201,-270313,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,27,37,665077,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12679,cg00209445,-0.00000218,0.00000217,-1.006668009,0.314879442,loss,ns,0.00000252,0.00000368,0.685605476,0.493474308,pos,ns,0.003585795,0.001078143,3.325899462,0.000987232,pos,ns,3.005580977,-0.00013578,0.0000371,-3.662097671,0.000294054,neg,ns,0.944344638,Phf20l1,Phf20l1_Exon,15,66595145,66595194,66595145,66595146,50,+,CGTTGGACAGACTGTCGCTATTACCCTGCCAAGATTGAAGCAATTAACAA,"Exon (Phf20l1-209/Phf20l1, exon 4 of 9)",15,66577560,66611616,34057,1,Phf20l1-209,17585,Phf20l1-209;Phf20l1-210;Phf20l1-205;Phf20l1-201;Phf20l1-211;Phf20l1-203;Phf20l1-206,Phf20l1;Phf20l1;Phf20l1;Phf20l1;Phf20l1;Phf20l1;Phf20l1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,239510,ENSMUSG00000072501,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4761,cg24313007,0.0000112,0.00000201,5.556116448,5.95E-08,gain,yes,0.00000234,0.00000341,0.685459651,0.493566168,pos,ns,-0.00010068,0.000999535,-0.100726861,0.919832401,neg,ns,0.036291296,0.00000448,0.0000344,0.130364866,0.896362315,pos,ns,0.090335249,Ier5l,Ier5l_fiveUTR,2,30473965,30474014,30473965,30473966,50,-,CGCAGGGAGATGCTGATCAGGCTCTGGGCGTCCAGGGCGCACTCCATGCT,Promoter (<=1kb),2,30471537,30474219,2683,2,Ier5l-201,205,Ier5l-201,Ier5l,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,13,72500,ENSMUSG00000089762,conserved gene but different region,2,30473689,30474742,1054,*,1054,111,0.680265655,0.91031746,0.105313093,9.07E-87,CpGisland,TRUE,U3,Pr-B
6988,cg00927851,0.000182955,0.0000134,13.65332268,1.49E-33,gain,yes,0.0000156,0.0000228,0.68545108,0.493571567,pos,ns,0.000264607,0.006669341,0.039675064,0.968377721,pos,ns,0.013955211,0.001278353,0.000229358,5.573610039,5.43E-08,pos,yes,0.416622252,Lsamp,Lsamp_Intron,16,40364721,40364770,40364769,40364770,50,-,GATCGATAAATCAATCAGTTCTTTTTACATCTTATGAAGCACTCCTCACG,"Intron (Lsamp-207/Lsamp, intron 1 of 2)",16,39984361,40979709,995349,1,Lsamp-207,380360,Lsamp-207;Lsamp-206;Lsamp-208;Lsamp-210;Lsamp-209,Lsamp;Lsamp;Lsamp;Lsamp;Lsamp,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,23,268890,ENSMUSG00000061080,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11899,cg07000689,0.00000206,0.00000135,1.526285266,0.127958427,gain,ns,0.00000157,0.00000229,0.685423288,0.493589075,pos,ns,0.002371272,0.000670669,3.535682218,0.000468792,pos,ns,3.329020044,-0.0000467,0.0000231,-2.024615175,0.043763916,neg,ns,0.957854355,Csnk1a1,Csnk1a1_Intron,18,61571761,61571810,61571809,61571810,50,+,CATTTGGCTACCCTGTTCTTTCTCTAATGCCTCGGTGTTGCCTGTCTGCG,"Intron (Csnk1a1-204/Csnk1a1, intron 4 of 9)",18,61555274,61590061,34788,1,Csnk1a1-204,16487,Csnk1a1-204;Csnk1a1-206;Csnk1a1-201;Csnk1a1-207;Csnk1a1-202;Csnk1a1-210;Csnk1a1-208;Csnk1a1-203,Csnk1a1;Csnk1a1;Csnk1a1;Csnk1a1;Csnk1a1;Csnk1a1;Csnk1a1;Csnk1a1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,9,93687,ENSMUSG00000024576,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17812,cg10985231,-0.00000966,0.00000348,-2.780161249,0.005765308,loss,ns,-0.00000405,0.0000059,-0.685385935,0.493612606,neg,ns,-0.0011507,0.001729876,-0.665192478,0.506421971,neg,ns,0.295487461,0.0000214,0.0000595,0.360407264,0.718788037,pos,ns,0.944826154,Irx3,Irx3_Intergenic_upstream,8,91827651,91827700,91827699,91827700,50,-,CAACAAAATGCATTACAACAGTAATTTTATGACTGTTAAAATAACTGTCG,Distal Intergenic,8,91798525,91802067,3543,2,Irx3-202,-25633,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,15,36,16373,ENSMUSG00000031734,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21497,cg10968562,0.0000522,0.00000586,8.911666248,4.39E-17,gain,yes,-0.00000682,0.00000996,-0.685184966,0.493739223,neg,ns,0.010083623,0.002917816,3.455880254,0.000625013,pos,ns,3.204110927,-0.000307239,0.000100343,-3.061877424,0.002392185,neg,ns,0.098117117,Bcl11b,Bcl11b_Promoter,12,108004034,108004083,108004034,108004035,50,-,CGGGTTCTCTGGGAGCTCTCGGTCTCTCTATGGCTGGGGCTGCCTCTGTA,Promoter (<=1kb),12,107910403,108003602,93200,2,Bcl11b-201,-481,Bcl11b-201;Bcl11b-202;Bcl11b-203,Bcl11b;Bcl11b;Bcl11b,0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,8,39,58208,ENSMUSG00000048251,conserved gene but different region,12,108003757,108004054,298,*,298,35,0.72818792,0.89604811,0.117449664,1.44E-29,CpGisland,TRUE,U3,Pr-B
3779,cg03724408,-0.0000367,0.00000804,-4.571409325,0.00000701,loss,ns,0.00000935,0.0000137,0.68491497,0.493909357,pos,ns,-0.008617238,0.004000779,-2.153890165,0.032019371,neg,ns,1.494587209,0.000231781,0.000137586,1.684621193,0.093068122,pos,ns,0.843122746,Gm39147,Gm39147_Intergenic_upstream,8,25368291,25368340,25368339,25368340,50,-,TGAAAACAGTAATCAAGTCCCACAGAAAACTCTCTAGAGACTTGTGGCCG,Distal Intergenic,8,25399020,25427436,28417,1,Gm39147-202,-30729,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,105243147,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20670,cg16833109,-0.0000475,0.00000963,-4.931990148,0.00000133,loss,yes,0.0000112,0.0000164,0.684910325,0.493912284,pos,ns,-0.01069988,0.004792144,-2.232795813,0.026276147,neg,ns,1.580438322,0.0000932,0.000164801,0.565553526,0.572106429,pos,ns,0.929219587,Kansl1,Kansl1_Exon,11,104425051,104425100,104425099,104425100,50,-,TGGCTTTTCTTTTGGTTCCGTTGGCAGCAATAAGGATGTTGGCGTTGCCG,"Exon (Kansl1-205/Kansl1, exon 2 of 14)",11,104333229,104442291,109063,2,Kansl1-205,17191,Kansl1-205;Kansl1-204;Kansl1-201;Kansl1-203;Kansl1-206,Kansl1;Kansl1;Kansl1;Kansl1;Kansl1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,11,76719,ENSMUSG00000018412,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
14528,cg08469417,0.0000907,0.0000209,4.33277288,0.0000199,gain,ns,-0.0000244,0.0000356,-0.684815526,0.493972028,neg,ns,0.09389165,0.010421874,9.009094791,2.18E-17,pos,yes,16.66228411,-0.002603,0.000358407,-7.262685352,3.09E-12,neg,yes,0.224460829,Nrip1,Nrip1_Intron,16,76319936,76319985,76319936,76319937,50,+,CGCTGTCTCAGCAAGGTCGAACGGGTCAGCGTGTCCTCATCTATAATCCA,"Intron (Nrip1-202/Nrip1, intron 3 of 3)",16,76287400,76373827,86428,2,Nrip1-202,53842,Nrip1-202;Nrip1-201;Nrip1-208;Nrip1-204;Nrip1-207,Nrip1;Nrip1;Nrip1;Nrip1;Nrip1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,8,268903,ENSMUSG00000048490,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
21889,cg15631690,0.00000578,0.00000237,2.435224601,0.01544612,gain,ns,0.00000276,0.00000403,0.684811308,0.493974686,pos,ns,0.00134587,0.001182047,1.138592986,0.255752081,pos,ns,0.592180825,0.0000276,0.0000407,0.679812254,0.497130669,pos,ns,0.078289775,Cdkn2c,Cdkn2c_Exon,4,109665065,109665114,109665113,109665114,50,-,TATTTTGCAACAAACTAGTAAGTTGCTCTAGGTCCCCCCTGGCAGCTGCG,Promoter (<=1kb),4,109660876,109665372,4497,2,Cdkn2c-201,258,Cdkn2c-201;Cdkn2c-202,Cdkn2c;Cdkn2c,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,13,12580,ENSMUSG00000028551,conserved gene and region,4,109665113,109665177,65,*,65,7,0.6,1.203703704,0.107692308,0.00000802,CpGisland,TRUE,NA,NRS
24805,cg02281922,0.00000826,0.00000355,2.32791539,0.020559846,gain,ns,-0.00000413,0.00000603,-0.684788468,0.493989081,neg,ns,-0.001206912,0.001765365,-0.683661203,0.49469981,neg,ns,0.305658256,0.0000351,0.0000607,0.57738843,0.564096184,pos,ns,0.915208673,Csmd2,Csmd2_Exon,4,128523519,128523568,128523519,128523520,50,+,CGCATCTGCCAGCAGGATCATCACTGGTCGGGCAAGACCCCTTTCTGTGT,"Exon (Csmd2-205/Csmd2, exon 53 of 71)",4,127988044,128567656,579613,1,Csmd2-205,535475,Csmd2-205,Csmd2,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,9,329942,ENSMUSG00000028804,conserved gene and region,4,128523431,128523617,187,*,187,13,0.598930481,0.775191327,0.069518717,0.00000003,CpGisland,TRUE,U15,NS
4469,cg20319558,0.00000742,0.00000183,4.046639848,0.0000657,gain,ns,-0.00000213,0.00000311,-0.684738826,0.494020368,neg,ns,0.001534473,0.000912241,1.682091321,0.093558104,pos,ns,1.028918587,-0.0000321,0.0000314,-1.021869126,0.307639623,neg,ns,0.035475956,Lep,Lep_Intergenic_upstream,6,28981398,28981447,28981446,28981447,50,-,TGTGTTACTATTTCGGGCGAGCCAGTGTTTCCAGGGGAAACCTAATGACG,Distal Intergenic,6,29060220,29073877,13658,1,Lep-201,-78822,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,4,16846,ENSMUSG00000059201,mapped to different genes,6,28981385,28981694,310,*,310,26,0.651612903,0.79393223,0.083870968,4.58E-18,CpGisland,TRUE,U3,Pr-B
25201,cg27245416,-0.0000284,0.00000394,-7.196882587,4.67E-12,loss,yes,-0.00000459,0.0000067,-0.684684913,0.494054348,neg,ns,0.000679768,0.001962429,0.346391263,0.729283681,pos,ns,0.137103505,-0.000085,0.0000675,-1.259771634,0.208699341,neg,ns,0.925931311,Arid1a,Arid1a_Exon,4,133687266,133687315,133687314,133687315,50,-,GAGGTATTCATACTGGGCTGATACCCAGGGTTTGGAGTCATGGAATTCCG,"Exon (Arid1a-202/Arid1a, exon 14 of 20)",4,133679008,133753611,74604,2,Arid1a-202,66296,Arid1a-202;Arid1a-205;Arid1a-201;Arid1a-203,Arid1a;Arid1a;Arid1a;Arid1a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,13,31,93760,ENSMUSG00000007880,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5587,cg23556209,0.00000192,0.00000171,1.122050629,0.262709247,gain,ns,0.00000199,0.00000291,0.684677769,0.494058851,pos,ns,-0.000487634,0.000852524,-0.571987995,0.567744637,neg,ns,0.245846959,0.0000689,0.0000293,2.350450087,0.01937717,pos,ns,0.960013575,Pbx3,Pbx3_Intron,2,34287698,34287747,34287698,34287699,50,-,CGAATGGTACAGCTCCAGGGGATGTTCACATGGCCGACCTTAAGAAAAGT,"Intron (Pbx3-202/Pbx3, intron 2 of 7)",2,34171457,34372038,200582,2,Pbx3-202,84291,Pbx3-202;Pbx3-201;Pbx3-210;Pbx3-206;Pbx3-207;Pbx3-209;Pbx3-204;Pbx3-205;Pbx3-203,Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,82,18516,ENSMUSG00000038718,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25226,cg10577937,2.22E-08,0.00000183,0.01212635,0.99033261,gain,ns,-0.00000213,0.0000031,-0.684660712,0.494069602,neg,ns,-0.0000708,0.000909338,-0.07782137,0.938020352,neg,ns,0.027787739,-0.0000462,0.0000313,-1.477374452,0.14059048,neg,ns,0.029467026,Hmgn2,Hmgn2_fiveUTR,4,133967907,133967956,133967955,133967956,50,+,GGGCTCCGGGGGGTTTATAAAGTTTTTATAGCGCTGGGAGCCCCGGACCG,Promoter (<=1kb),4,133964991,133967908,2918,2,Hmgn2-212,0,Dhdds-209;Dhdds-201;Dhdds-207;Dhdds-208;Dhdds-210;Dhdds-204;Dhdds-206;Dhdds-203;Dhdds-202;Dhdds-205;Hmgn2-203;Hmgn2-204;Hmgn2-212;Hmgn2-201;Hmgn2-202;Hmgn2-211;Hmgn2-210;Hmgn2-206;Hmgn2-205;Hmgn2-207;Hmgn2-208;Hmgn2-213;Hmgn2-209,Dhdds;Dhdds;Dhdds;Dhdds;Dhdds;Dhdds;Dhdds;Dhdds;Dhdds;Dhdds;Hmgn2;Hmgn2;Hmgn2;Hmgn2;Hmgn2;Hmgn2;Hmgn2;Hmgn2;Hmgn2;Hmgn2;Hmgn2;Hmgn2;Hmgn2,0;0;0;0;0;0;26243;32437;32437;32962;0;-466;0;0;0;0;-632;-656;-664;0;0;0;-46,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,4,15331,ENSMUSG00000003038,mapped to different genes,4,133967280,133968016,737,*,737,106,0.736770692,1.062855433,0.143826323,2.03E-99,CpGisland,TRUE,U1,Pr-A
26094,cg00746288,-0.0000559,0.00000889,-6.284558695,1.11E-09,loss,yes,-0.0000103,0.0000151,-0.684509904,0.494164661,neg,ns,-0.017528149,0.00442515,-3.96102949,0.0000926,neg,ns,4.033196087,0.000210616,0.000152181,1.383987853,0.167357761,pos,ns,0.843758314,Sox5,Sox5_Intron,6,143862753,143862802,143862753,143862754,50,-,CGAGGCTAAATCTAACCAGATCCATTGGTGAATTGTGACAGATGGAGGGA,"Intron (Sox5-201/Sox5, intron 10 of 14)",6,143828425,144209480,381056,2,Sox5-201,346678,Sox5-201;Sox5-214;Sox5-205;Sox5-204;Sox5-202;Sox5-203;Sox5-209;Sox5-211;Sox5-206,Sox5;Sox5;Sox5;Sox5;Sox5;Sox5;Sox5;Sox5;Sox5,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,71,20678,ENSMUSG00000041540,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15278,cg13911381,-0.00000907,0.00000369,-2.460743311,0.014409824,loss,ns,0.00000429,0.00000626,0.68445575,0.494198799,pos,ns,0.002531052,0.001834972,1.379341133,0.168783833,pos,ns,0.772669156,-0.000135355,0.0000631,-2.144936313,0.032734821,neg,ns,0.855776349,Actn1,Actn1_Exon,12,80170661,80170710,80170661,80170662,50,+,CGTGCTCCATGCAGGAGGCGAGTACCTGGGGGTCGTTGCCAATATCATAA,"Exon (Actn1-201/Actn1, exon 19 of 21)",12,80167547,80260371,92825,2,Actn1-201,89661,Actn1-201;Actn1-206;Actn1-202;Actn1-205,Actn1;Actn1;Actn1;Actn1,0;0;0;-510,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,10,109711,ENSMUSG00000015143,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12094,cg10473171,-0.00000209,0.00000189,-1.102327103,0.271174549,loss,ns,-0.0000022,0.00000322,-0.684295347,0.494299921,neg,ns,0.0000165,0.000943158,0.017519455,0.986033482,pos,ns,0.006108338,-0.000021,0.0000324,-0.647483802,0.517798072,neg,ns,0.961447944,Efna5,Efna5_Intron,17,62829096,62829145,62829144,62829145,50,+,CACCCCTGCCTTTGCAGTCAGACAGTCATTTAGCTGGAGTCAATCAAGCG,"Intron (Efna5-201/Efna5, intron 1 of 4)",17,62604184,62881317,277134,2,Efna5-201,52172,Efna5-201;Efna5-202,Efna5;Efna5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,21,13640,ENSMUSG00000048915,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15362,cg13155053,-0.00000552,0.00000575,-0.960028948,0.33778882,loss,ns,0.00000669,0.00000977,0.684184878,0.49436957,pos,ns,-0.000175621,0.002863348,-0.061334139,0.951132626,neg,ns,0.021758921,-0.000176178,0.0000985,-1.789149205,0.074566961,neg,ns,0.853260622,Gm46388,Gm46388_Intergenic_downstream,13,80515016,80515065,80515064,80515065,50,-,TACTGAGTGCTGACTTTTCCTACTTAATTATACATTAAAAGTGTCAAGCG,Distal Intergenic,13,80493009,80493484,476,1,Gm46388-201,22056,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,11,108168047,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23791,cg07046041,-0.00000019,0.00000355,-0.053445531,0.957411353,loss,ns,0.00000413,0.00000603,0.684160422,0.49438499,pos,ns,0.000302102,0.001767807,0.170890666,0.864421221,pos,ns,0.06327458,-0.00000664,0.0000608,-0.109199875,0.913114611,neg,ns,0.906663172,Galnt2l,Galnt2l_Intron,8,120392441,120392490,120392441,120392442,50,-,CGCCTTTACAATAGTTTATGTTGAGAGTGGAATATAAATTGCATTATTAA,"Intron (Galnt2l-201/Galnt2l, intron 1 of 15)",8,119910841,124345722,4434882,1,Galnt2l-201,481600,Galnt2l-201;Gse1-206,Galnt2l;Gse1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,28,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19906,cg24174014,-0.00000534,0.0000112,-0.476055195,0.63437038,loss,ns,-0.000013,0.0000191,-0.684062248,0.494446893,neg,ns,-0.0041952,0.00558426,-0.75125436,0.45306951,neg,ns,0.343835163,0.000434261,0.000192042,2.261276819,0.02443489,pos,ns,0.782882095,Ogt,Ogt_Exon,X,101643095,101643144,101643143,101643144,50,+,GACAATACTGGTGTGCTTTTATTACTTTCATCTATACACTTCCAGTGTCG,"Exon (Ogt-202/Ogt, exon 3 of 23)",20,101640060,101682940,42881,1,Ogt-202,3035,Ogt-202;Ogt-206;Ogt-201;Ogt-205;Ogt-204;Ogt-207,Ogt;Ogt;Ogt;Ogt;Ogt;Ogt,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,32,33,108155,ENSMUSG00000034160,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13065,cg08852568,-0.0000139,0.00000557,-2.498281174,0.01299738,loss,ns,-0.00000647,0.00000946,-0.68402593,0.494469794,neg,ns,-0.006822006,0.002772484,-2.460611936,0.014414997,neg,ns,1.841185448,0.000107929,0.0000953,1.131981891,0.258516898,pos,ns,0.882932253,Chd3,Chd3_Exon,11,69350108,69350157,69350156,69350157,50,+,TTCTTTTTGACGAGAGACATGACTCCAATGCGGGTCAACACCTGCTGGCG,"Exon (Chd3-202/Chd3, exon 29 of 40)",11,69343273,69369406,26134,2,Chd3-202,19249,Chd3-205;Chd3-203;Chd3-202;Chd3-211;Chd3-201;Chd3-204;Chd3-208;Chd3-206;Chd3-209,Chd3;Chd3;Chd3;Chd3;Chd3;Chd3;Chd3;Chd3;Chd3,0;0;0;0;0;0;0;4310;6453,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,22,26,216848,ENSMUSG00000018474,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5014,cg16658659,0.000000148,0.0000052,0.028452779,0.977319337,gain,ns,-0.00000604,0.00000883,-0.683926086,0.494532755,neg,ns,-0.002524165,0.002587356,-0.975576897,0.330034836,neg,ns,0.481440217,0.0000614,0.000089,0.68986442,0.490795556,pos,ns,0.899999217,Nrg1,Nrg1_threeUTR,8,31818653,31818702,31818653,31818654,50,+,CGAGCCGGGGTGGTCATGGCTGACACATACCTGTGTGAGCACAGAATACC,3' UTR,8,31814551,32009540,194990,2,Nrg1-203,190838,Nrg1-203;Nrg1-202;Nrg1-218;Nrg1-219;Nrg1-213;Nrg1-206;Nrg1-201;Nrg1-214;Nrg1-210;Nrg1-224;Nrg1-231;Nrg1-221;Nrg1-233;Nrg1-208;Nrg1-212;Nrg1-211;Nrg1-205,Nrg1;Nrg1;Nrg1;Nrg1;Nrg1;Nrg1;Nrg1;Nrg1;Nrg1;Nrg1;Nrg1;Nrg1;Nrg1;Nrg1;Nrg1;Nrg1;Nrg1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,5,211323,ENSMUSG00000062991,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26598,cg03434865,-9.97E-08,0.00000333,-0.029928033,0.976143707,loss,ns,0.00000387,0.00000566,0.683860813,0.494573918,pos,ns,0.00402206,0.001657261,2.426932812,0.015796752,pos,ns,1.801432196,-0.000081,0.000057,-1.420587634,0.156441683,neg,ns,0.943699734,Pex14,Pex14_Intron,4,148967370,148967419,148967370,148967371,50,+,CGAAATGACGGCGGCTTCATTTGCAAATGTGAACAGATTCTCAGAGCAGA,"Intron (Gm17029-201/Gm17029-201, intron 2 of 2)",4,148960535,149099876,139342,2,Pex14-201,132457,Pex14-201;Pex14-202,Pex14;Pex14,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,41,48,56273,ENSMUSG00000028975,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16022,cg15741341,-0.0000519,0.00000921,-5.638404877,3.86E-08,loss,yes,0.0000107,0.0000156,0.683521946,0.494787649,pos,ns,-0.006570121,0.004582367,-1.433783125,0.152642019,neg,ns,0.816325898,-0.000225796,0.000157587,-1.432829227,0.152914307,neg,ns,0.689976942,Epha5,Epha5_Exon,5,84233679,84233728,84233727,84233728,50,-,TTGTGTGAGCGAGTAGATCCACCATCATGACAGAGGTGTTTTTCAGGCCG,"Exon (Epha5-205/Epha5, exon 5 of 18)",5,84054761,84416921,362161,2,Epha5-201,183193,Epha5-201;Epha5-205;Epha5-206;Epha5-202;Epha5-203;Epha5-204;Epha5-209;Epha5-208;Epha5-210,Epha5;Epha5;Epha5;Epha5;Epha5;Epha5;Epha5;Epha5;Epha5,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,9,13839,ENSMUSG00000029245,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9658,cg12220591,-0.00000365,0.00000667,-0.547907141,0.58414996,loss,ns,0.00000774,0.0000113,0.683489479,0.494808129,pos,ns,-0.003003808,0.003317617,-0.905411377,0.365950634,neg,ns,0.436577496,-0.0000404,0.000114093,-0.354032587,0.723555139,neg,ns,0.592269832,Htatip2,Htatip2_Intergenic_upstream,7,49709727,49709776,49709727,49709728,50,-,CGGACTGTAAAGTCACAGTTGACTGCTTTAATGTGGAACAGCTGGGAGGG,Distal Intergenic,7,49759115,49762759,3645,1,Htatip2-203,-49388,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,7,53415,ENSMUSG00000039745,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25776,cg26374905,0.000108127,0.000012,8.986147677,2.57E-17,gain,yes,0.000014,0.0000204,0.683410407,0.494858009,pos,ns,0.009965982,0.005988739,1.664120334,0.097098825,pos,ns,1.012786027,0.0000795,0.000205952,0.38624088,0.699583235,pos,ns,0.310536746,Uncx,Uncx_Promoter,5,139540015,139540064,139540015,139540016,50,+,CGTGAAGTTAATTGAGTAATTAAAACCCTCAACTGCCGCCTATTAATTTG,Promoter (3-4kb),5,139543494,139548179,4686,1,Uncx-201,-3430,Uncx-201;Uncx-202,Uncx;Uncx,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,22,88,22255,ENSMUSG00000029546,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
1933,cg06165072,0.0000132,0.00000963,1.367499158,0.172459523,gain,ns,0.0000112,0.0000164,0.683216248,0.494980501,pos,ns,-0.001122031,0.004793422,-0.234077272,0.815079503,neg,ns,0.088800028,0.000174051,0.000164845,1.055844269,0.291861516,pos,ns,0.766470568,Gm8984,Gm8984_Intergenic_downstream,5,16496721,16496770,16496769,16496770,50,-,AAAAGCAGAAATCAGGCTCCTATTAGTCTTGAACACTAATCTTGTTGACG,Distal Intergenic,5,16508165,16509183,1019,2,Gm8984-201,12462,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,668121,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26936,cg11496811,-0.00000198,0.00000157,-1.267401529,0.20596297,loss,ns,-0.00000182,0.00000266,-0.683192264,0.494995633,neg,ns,0.001273789,0.000779475,1.634163069,0.103239697,pos,ns,0.986153278,-0.0000556,0.0000268,-2.075350082,0.038778472,neg,ns,0.070612702,Ier5,Ier5_Exon,1,155098504,155098553,155098552,155098553,50,+,TCAGAAGGCCACGATGGCTGTGCTCCAGGGGTTCATGTCTCTCAGCACCG,"Exon (Ier5-201/Ier5, exon 1 of 1)",1,155096361,155099636,3276,2,Ier5-201,1083,Ier5-201,Ier5,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,15939,ENSMUSG00000056708,conserved gene and region,1,155098326,155099249,924,*,924,111,0.741341991,0.877470356,0.12012987,6.97E-94,CpGisland,TRUE,U1,Pr-A
8599,cg14849852,0.0000522,0.0000155,3.361821832,0.000871291,gain,ns,-0.000018,0.0000264,-0.683140878,0.495028055,neg,ns,0.035337475,0.007733271,4.569537815,0.00000707,pos,ns,5.150789077,-0.001115158,0.000265947,-4.193166266,0.0000359,neg,ns,0.527720416,Btrc,Btrc_Intron,19,45432839,45432888,45432839,45432840,50,+,CGATGGTGTCCTGACCTCTATCACGTTGAACATCTCCACTCTGATTGCTG,"Intron (Btrc-204/Btrc, intron 1 of 2)",19,45363734,45507736,144003,1,Btrc-204,69105,Btrc-204;Btrc-201;Btrc-210;Btrc-206;Btrc-202;Btrc-203,Btrc;Btrc;Btrc;Btrc;Btrc;Btrc,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,63,98,12234,ENSMUSG00000025217,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9383,cg09131775,-0.0000566,0.00000994,-5.697111484,2.83E-08,loss,yes,0.0000115,0.0000169,0.683054058,0.495082837,pos,ns,-0.013524585,0.00494627,-2.734300028,0.006610802,neg,ns,2.179745853,0.000275267,0.000170102,1.61824967,0.106625761,pos,ns,0.778872731,Kcnip4,Kcnip4_Exon,5,48509667,48509716,48509715,48509716,50,+,GCAGGAGACGACGTTTTGGCAGCTGAGCAGGGCAAGAGCTTCATGAGCCG,"Exon (Kcnip4-201/Kcnip4, exon 2 of 9)",5,48389502,48599682,210181,2,Kcnip4-204,89966,Kcnip4-204;Kcnip4-205;Kcnip4-208;Kcnip4-201;Kcnip4-207;Kcnip4-206;Kcnip4-202,Kcnip4;Kcnip4;Kcnip4;Kcnip4;Kcnip4;Kcnip4;Kcnip4,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,6,80334,ENSMUSG00000029088,conserved gene and region,5,48509447,48509778,332,*,332,17,0.475903615,0.922222222,0.051204819,1.34E-08,CpGisland,TRUE,U15,NS
24948,cg23239046,-0.0000065,0.00000463,-1.405671949,0.160822996,loss,ns,0.00000537,0.00000786,0.683044604,0.495088803,pos,ns,0.002442295,0.002302318,1.060798346,0.289607311,pos,ns,0.538190478,-0.0000195,0.0000792,-0.245964405,0.805872559,neg,ns,0.641027433,Kctd7,Kctd7_Exon,5,130151758,130151807,130151758,130151759,50,+,CGGGCCCCTCCTGGAGCAGCTGGAGAACATGCAGCCACTGAAGGGCGAGA,"Exon (Kctd7-201/Kctd7, exon 3 of 4)",5,130144861,130155806,10946,1,Kctd7-201,6897,Kctd7-201;Kctd7-203;Kctd7-202,Kctd7;Kctd7;Kctd7,0;6834;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,212919,ENSMUSG00000034110,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26620,cg11771679,0.0000339,0.00000884,3.838803173,0.000149877,gain,ns,-0.0000103,0.000015,-0.683031459,0.495097097,neg,ns,0.031586389,0.004397895,7.182160911,5.12E-12,pos,yes,11.29049964,-0.000921356,0.000151243,-6.091885335,3.30E-09,neg,yes,0.868522354,Dennd5b,Dennd5b_Exon,6,149036417,149036466,149036417,149036418,50,+,CGGACTGTAACTTTGGAAAGAACCCCTGCTCATATTTGCCTTGACCAATT,"Exon (Dennd5b-201/Dennd5b, exon 7 of 21)",6,148988071,149101680,113610,2,Dennd5b-201,65214,Dennd5b-201;Dennd5b-205;Dennd5b-207;Gm15781-201,Dennd5b;Dennd5b;Dennd5b;Gm15781,0;0;6407;-4514,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,320560,ENSMUSG00000030313,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13432,cg17873451,-0.00000147,0.00000169,-0.871020862,0.384416782,loss,ns,0.00000196,0.00000287,0.682850575,0.495211243,pos,ns,0.002081638,0.000842114,2.471918212,0.013975757,pos,ns,1.854624661,-0.0000694,0.000029,-2.396796674,0.017131065,neg,ns,0.051777369,Sp5,Sp5_fiveUTR,2,70475077,70475126,70475125,70475126,50,+,AGCAAAGTCCTTATCAAATTCTTGGAGGTGATCCTGAAGCGCTCAGACCG,Promoter (<=1kb),2,70474923,70477729,2807,1,Sp5-201,154,Sp5-201,Sp5,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,7,11,64406,ENSMUSG00000075304,mapped to different genes,2,70475116,70475442,327,*,327,36,0.691131499,0.930740038,0.110091743,2.76E-29,CpGisland,TRUE,U3,Pr-B
12997,cg19830823,-0.00000619,0.00000598,-1.034771309,0.301582257,loss,ns,-0.00000693,0.0000102,-0.68277971,0.495255966,neg,ns,0.003506513,0.002975438,1.178486442,0.239506531,pos,ns,0.620682639,-0.000245376,0.000102325,-2.398001242,0.017075882,neg,ns,0.913684915,Gm4842,Gm4842_Intergenic_upstream,18,69096153,69096202,69096153,69096154,50,-,CGATGGAATTAGCTGTAATTAAGGACATTGTGAAATATGGTGGGGCAAAC,Distal Intergenic,18,69256288,69257122,835,1,Gm4842-201,-160135,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,10,225681,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10205,cg18243072,0.000043,0.0000051,8.433794852,1.29E-15,gain,yes,0.00000592,0.00000867,0.682635257,0.495347136,pos,ns,0.006560079,0.002538785,2.583943857,0.010225104,pos,ns,1.990332286,-0.0000303,0.0000873,-0.347611859,0.728367596,neg,ns,0.109832483,Hoxa10,Hoxa10_fiveUTR,6,52234911,52234960,52234959,52234960,50,+,CAGATAGCCCTTTCTGGCTGACATTTCTTGTGCAAAACATGCTGAATACG,Promoter (<=1kb),6,52231197,52234939,3743,2,Hoxa10-202,0,Hoxa10-202;Hoxa10-203;Hoxa10-201;Hoxa10-204;Hoxa9-203;Hoxa9-204;Hoxa9-205,Hoxa10;Hoxa10;Hoxa10;Hoxa10;Hoxa9;Hoxa9;Hoxa9,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,7,15395,ENSMUSG00000000938,mapped to different genes,6,52234959,52235088,130,*,130,17,0.7,1.083333333,0.130769231,2.11E-15,CpGisland,TRUE,U13,Hc-P
7271,cg21777134,-0.0000202,0.0000108,-1.859224844,0.063942614,loss,ns,-0.0000126,0.0000184,-0.682521905,0.495418684,neg,ns,-0.012312516,0.005397063,-2.281336208,0.023206473,neg,ns,1.634390864,0.000206178,0.000185605,1.110845332,0.267495775,pos,ns,0.301565377,Gm5267,Gm5267_Intron,1,41919001,41919050,41919049,41919050,50,-,ATGCAAGATTGAAACAGAAAATACCTTTACCGAGGCAATCATTTGCCACG,"Intron (Gm29260-201/Gm29260-201, intron 4 of 5)",1,42103289,42104333,1045,1,Gm5267-201,-184288,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,15,383634,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4569,cg20731271,-0.00000259,0.00000114,-2.277294538,0.023449554,loss,ns,0.00000132,0.00000193,0.682232231,0.495601552,pos,ns,0.001327495,0.000565277,2.348396407,0.019482422,pos,ns,1.710357059,-0.0000339,0.0000194,-1.744859956,0.082000205,neg,ns,0.039109833,Ranbp6,Ranbp6_Exon,19,29812870,29812919,29812918,29812919,50,+,GATCAGGTTCTTCAGAAGCTGGTAAAACTCTTGCTTTTCTGACACGGTCG,Promoter (<=1kb),19,29808400,29812974,4575,2,Ranbp6-201,55,Ranbp6-201;Ranbp6-202,Ranbp6;Ranbp6,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,240614,ENSMUSG00000074909,conserved gene and region,19,29812909,29813157,249,*,249,29,0.694779117,0.997100249,0.116465864,1.88E-24,CpGisland,TRUE,NA,NRS
18130,cg21376507,0.0000178,0.00000255,6.982665458,1.77E-11,gain,yes,-0.00000296,0.00000434,-0.682089627,0.495691589,neg,ns,-0.000481661,0.001270044,-0.379247507,0.704763717,neg,ns,0.151956462,0.0000893,0.0000437,2.044441751,0.041754414,pos,ns,0.932501415,Bbs2,Bbs2_Exon,8,94082355,94082404,94082403,94082404,50,+,CTTTCCCCATCCACTGAGCAGCAGATTAACTGTATGTGGCCATCCATCCG,"Exon (Bbs2-201/Bbs2, exon 8 of 17)",8,94067954,94098928,30975,2,Bbs2-201,16524,Bbs2-201;Bbs2-203,Bbs2;Bbs2,0;-2599,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,67378,ENSMUSG00000031755,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2616,cg10325143,-0.000017,0.00000583,-2.917746684,0.003783422,loss,ns,-0.00000675,0.0000099,-0.681990966,0.495753887,neg,ns,-0.002322087,0.002899954,-0.800732166,0.423899964,neg,ns,0.372736621,-0.0000634,0.0000997,-0.636091881,0.525185875,neg,ns,0.914007665,Zswim8,Zswim8_Exon,14,20722642,20722691,20722690,20722691,50,-,TCCTTCCTAGCTCTTGCTCAGAGTTGAGGCCTTGGTCGGGTATGTGTGCG,"Exon (Zswim8-209/Zswim8, exon 12 of 13)",14,20707552,20723619,16068,1,Zswim8-201,15090,Ndst2-202;Ndst2-205;Ndst2-201;Ndst2-204;Ndst2-207;Zswim8-201;Zswim8-208;Zswim8-204;Zswim8-203;Zswim8-209;Zswim8-207;Zswim8-202;Zswim8-210;Zswim8-214,Ndst2;Ndst2;Ndst2;Ndst2;Ndst2;Zswim8;Zswim8;Zswim8;Zswim8;Zswim8;Zswim8;Zswim8;Zswim8;Zswim8,0;0;0;0;0;0;0;0;0;0;4041;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,13,14,268721,ENSMUSG00000021819,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21755,cg18616546,0.0000018,0.00000517,0.347485963,0.728462066,gain,ns,-0.00000599,0.00000879,-0.681963308,0.495771352,neg,ns,-0.001401659,0.002574478,-0.544443741,0.586527555,neg,ns,0.23171158,-0.0000734,0.0000885,-0.828550844,0.407996067,neg,ns,0.721399239,Zfhx3,Zfhx3_Exon,8,108956903,108956952,108956951,108956952,50,+,CTTCAACGGTTACCTCAAGTTCATGCAGCACCTCAGGGGTTCAGCCCTCG,"Exon (Zfhx3-204/Zfhx3, exon 16 of 16)",8,107942644,108961630,1018987,1,Zfhx3-204,1014259,Zfhx3-204;Zfhx3-201,Zfhx3;Zfhx3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,46,177,11906,ENSMUSG00000038872,conserved gene and region,8,108956951,108957024,74,*,74,9,0.608108108,1.316205534,0.121621622,6.35E-08,CpGisland,TRUE,NA,NRS
15029,cg25362942,-0.0000209,0.00000871,-2.396073799,0.017164256,loss,ns,0.0000101,0.0000148,0.681915089,0.495801802,pos,ns,-0.002002871,0.00433298,-0.46223861,0.644234465,neg,ns,0.190956045,0.000112615,0.000149011,0.755751136,0.450372284,pos,ns,0.387326066,Rac2,Rac2_Exon,15,78564884,78564933,78564932,78564933,50,+,GGCCCTGCGGGTAGGTGATGGGAGCCAGCTTCTTCTCCTTCAGTTTCTCG,"Exon (Rac2-201/Rac2, exon 5 of 7)",15,78559167,78572783,13617,2,Rac2-201,7850,Rac2-201;Rac2-203;Rac2-202,Rac2;Rac2;Rac2,0;0;7848,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,19354,ENSMUSG00000033220,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U5,En-Sd
9094,cg15943628,-0.00000578,0.00000235,-2.461086861,0.014396303,loss,ns,-0.00000272,0.00000399,-0.681913982,0.495802501,neg,ns,-0.002534494,0.001168167,-2.169634166,0.030793996,neg,ns,1.511533954,0.00000676,0.0000402,0.168262521,0.866486482,pos,ns,0.045750225,Bicral,Bicral_fiveUTR,17,46858426,46858475,46858474,46858475,50,-,GGAAACTCACCGTCATGAAAAAGCAGTGCCTTGTCAACGGGGTTTCTGCG,Promoter (<=1kb),17,46825795,46858482,32688,2,Bicral-203,7,Bicral-203,Bicral,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,4,210982,ENSMUSG00000036568,conserved gene and region,17,46858436,46858691,256,*,256,44,0.76953125,1.164598842,0.171875,1.00E-45,CpGisland,TRUE,U1,Pr-A
18571,cg14758371,0.00015064,0.0000169,8.916240315,4.25E-17,gain,yes,-0.0000196,0.0000287,-0.681731021,0.495918045,neg,ns,0.023739391,0.008408824,2.823152369,0.005062996,pos,ns,2.295592451,-0.000435409,0.000289179,-1.505674007,0.13316911,neg,ns,0.332016759,Hoxb6,Hoxb6_Intron,11,96296802,96296851,96296850,96296851,50,+,GGATCAGACGAATAAACGCTCATAAATACCTCTGGGCTTAGATAAGAGCG,"Intron (Hoxb6-202/Hoxb6, intron 1 of 2)",11,96292476,96301569,9094,1,Hoxb6-202,4326,Hoxb6-202;Hoxb6-201,Hoxb6;Hoxb6,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,16,15414,ENSMUSG00000000690,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
4613,cg16170255,-0.00000528,0.00000606,-0.871151763,0.384345425,loss,ns,0.00000702,0.0000103,0.681703518,0.495935416,pos,ns,0.003589038,0.003018134,1.189158042,0.235287538,pos,ns,0.628401074,-0.000153525,0.000103793,-1.479138769,0.140118649,neg,ns,0.906709358,Gm7917,Gm7917_Intergenic_upstream,18,29961857,29961906,29961857,29961858,50,-,CGCTGTCCATTAGATTATGTTCATTTTGTCTGAGATGCCATTAGAAATCT,Distal Intergenic,18,29657054,29657596,543,2,Gm7917-201,-304310,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,8,666073,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6936,cg20920370,-0.000000858,0.00000278,-0.308985526,0.757540094,loss,ns,0.00000322,0.00000472,0.681569021,0.496020365,pos,ns,0.000445402,0.001382733,0.322116756,0.747581357,pos,ns,0.126341537,0.0000204,0.0000476,0.429038787,0.668192999,pos,ns,0.931849427,Gm47361,Gm47361_Intron,13,39834315,39834364,39834315,39834316,50,+,CGTTCACCTTTTTAGTGCTTAGGTATGGTAATATGATAGTCACAGAAGGA,"Intron (A230103O09Rik-201/A230103O09Rik-201, intron 2 of 2)",13,39796321,39796944,624,1,Gm47361-201,37994,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,3,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2288,cg26979561,-0.0000319,0.00000556,-5.72387961,2.46E-08,loss,yes,0.00000644,0.00000945,0.681479429,0.496076956,pos,ns,-0.00361901,0.002769741,-1.306623984,0.192308958,neg,ns,0.716000485,0.0000894,0.0000953,0.938479651,0.348728581,pos,ns,0.940130585,Meis1,Meis1_Intron,11,18945158,18945207,18945206,18945207,50,+,TGACAGAAACTGAAAATGTCATATTATCTGCCCATGTGTCATGAAGTCCG,"Intron (Meis1-206/Meis1, intron 7 of 9)",11,18879817,19018985,139169,2,Meis1-206,73778,Meis1-206;Meis1-202;Meis1-209;Meis1-201;Meis1-203;Meis1-208;Meis1-207,Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,88,17268,ENSMUSG00000020160,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13542,cg06763851,-0.00000979,0.00000335,-2.920567243,0.003750263,loss,ns,-0.00000388,0.00000569,-0.681284456,0.496200124,neg,ns,0.000127244,0.00166823,0.076274599,0.939249836,pos,ns,0.027218872,-0.00000159,0.0000574,-0.027681629,0.977933887,neg,ns,0.939578842,Gm10172,Gm10172_Exon,7,71224375,71224424,71224375,71224376,50,+,CGCCCTGAGTACCTAATAAATCCTGCCTGAGCTTTTTATTGAGGAGAATT,"Exon (6030442E23Rik-201/6030442E23Rik-201, exon 2 of 2)",7,71332363,71332921,559,2,Gm10172-201,108497,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,31,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3053,cg13854663,0.0000192,0.00000311,6.168294799,2.15E-09,gain,yes,0.0000036,0.00000528,0.681224924,0.496237735,pos,ns,0.004896755,0.001546143,3.167078003,0.001693099,pos,ns,2.771317736,-0.0000631,0.0000532,-1.18632777,0.236401295,neg,ns,0.081408793,Pou3f2,Pou3f2_Exon,4,22487109,22487158,22487109,22487110,50,+,CGAGGACGAGTCCGCCTCCTCCAACCACTTGTTCAACAAAGGCTTCAGCT,"Exon (Pou3f2-201/Pou3f2, exon 1 of 1)",4,22482780,22488366,5587,2,Pou3f2-201,1208,Pou3f2-201,Pou3f2,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,18,18992,ENSMUSG00000095139,conserved gene and region,4,22487033,22487110,78,*,78,8,0.628205128,1.04,0.102564103,0.00000181,CpGisland,TRUE,U13,Hc-P
16397,cg15932677,-0.00000124,0.00000176,-0.703125241,0.48250541,loss,ns,-0.00000204,0.000003,-0.680981764,0.496391372,neg,ns,0.001431375,0.000877631,1.630952948,0.103915742,pos,ns,0.983318657,-0.000061,0.0000302,-2.022074816,0.044027228,neg,ns,0.955727316,Gm9400,Gm9400_Intron,17,84827418,84827467,84827418,84827419,50,+,CGAATCTATGGAAATCTTGGAAATGCTTTGACAGCTGAGCTATTCTTGGG,"Intron (Gm49981-201/Gm49981-201, intron 2 of 3)",17,84852538,84853451,914,1,Gm9400-201,-25071,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,668848,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18021,cg13025676,0.00000148,0.00000512,0.289349538,0.772507323,gain,ns,0.00000593,0.0000087,0.680937488,0.496419351,pos,ns,0.002035161,0.002549241,0.798339664,0.425284565,pos,ns,0.371320379,-0.0000272,0.0000877,-0.310681318,0.756251688,neg,ns,0.936421776,Pola1,Pola1_Intron,X,93310512,93310561,93310512,93310513,50,+,CGGTATCTAACAAGGTGTAAATACAATAACAAGCATGTAATTAAGTGAGC,"Intron (Pola1-201/Pola1, intron 36 of 36)",20,93304767,93632155,327389,2,Pola1-201,321594,Pola1-201,Pola1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,59,62,18968,ENSMUSG00000006678,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15025,cg26809863,-0.000000515,0.00000421,-0.12213961,0.902867591,loss,ns,0.00000487,0.00000716,0.680922871,0.496428587,pos,ns,0.004308411,0.002096578,2.054972571,0.040719364,pos,ns,1.390199012,-0.000156989,0.0000721,-2.177350349,0.030208355,neg,ns,0.926715425,Ift20,Ift20_Exon,11,78541365,78541414,78541365,78541366,50,-,CGGGTTGAATATGAAGCTTTGTGTAAAGTAGAAGCAGAACAAAATGAATT,"Exon (Ift20-203/Ift20, exon 6 of 6)",11,78536361,78541737,5377,1,Ift20-203,5004,Ift20-203;Ift20-201;Ift20-202;Ift20-204;Ift20-205;Tmem97-201,Ift20;Ift20;Ift20;Ift20;Ift20;Tmem97,0;0;0;0;0;9363,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,55978,ENSMUSG00000001105,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17873,cg15179336,0.0000012,0.0000055,0.218663571,0.827056013,gain,ns,0.00000636,0.00000934,0.680889252,0.496449832,pos,ns,-0.001762062,0.00273758,-0.643656598,0.520274022,neg,ns,0.283767859,-0.000257223,0.0000941,-2.732193082,0.00665221,neg,ns,0.803838385,Hdac4,Hdac4_Intergenic_upstream,1,92277452,92277501,92277500,92277501,50,+,GGGAATATTTTTCATTATCTTCCCTCTCAATTTAATTAATCCACATTCCG,Distal Intergenic,1,92030144,92195699,165556,2,Hdac4-211,-81753,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,3,208727,ENSMUSG00000026313,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
529,cg20075878,0.0000175,0.00000998,1.748886635,0.081300345,gain,ns,-0.0000115,0.000017,-0.680855025,0.496471461,neg,ns,0.004183371,0.004969626,0.841787789,0.400555657,pos,ns,0.397337131,0.000000707,0.000170905,0.004135818,0.996702764,pos,ns,0.409192009,Dlx6,Dlx6_Intron,6,6834948,6834997,6834996,6834997,50,+,TTCGTTTTTGTGCAGACAATCAGCAGGTCATTAGTGTACCATACAAATCG,"Intron (Dlx6os1-202/Dlx6os1-202, intron 1 of 1)",6,6863334,6867970,4637,1,Dlx6-203,-28337,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,36,13396,ENSMUSG00000029754,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
436,cg22692462,-0.00000243,0.00000229,-1.062583019,0.288798143,loss,ns,0.00000265,0.00000389,0.680785294,0.496515528,pos,ns,0.001743224,0.001138258,1.531484541,0.126669504,pos,ns,0.89732793,-0.000121343,0.0000391,-3.099857469,0.002113813,neg,ns,0.94421474,Fam110b,Fam110b_Exon,4,5799532,5799581,5799580,5799581,50,-,TCTCAGGACAGTAACAGTGACCTTAGAAATGATGACAGTGCCAATGACCG,"Exon (Fam110b-201/Fam110b, exon 3 of 3)",4,5644121,5801101,156981,1,Fam110b-201,155411,Fam110b-203;Fam110b-201;Fam110b-205;Fam110b-204;Fam110b-202;Fam110b-208;Fam110b-209;Fam110b-207,Fam110b;Fam110b;Fam110b;Fam110b;Fam110b;Fam110b;Fam110b;Fam110b,155442;0;155342;0;0;26653;0;1448,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,242297,ENSMUSG00000049119,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15707,cg21973766,0.00000902,0.00000728,1.239597189,0.216061997,gain,ns,0.00000842,0.0000124,0.680693199,0.496573732,pos,ns,0.011207175,0.003622763,3.093543639,0.002157918,pos,ns,2.665965156,-0.000346483,0.000124587,-2.781061425,0.00574974,neg,ns,0.671523789,Tcf20,Tcf20_Intron,15,82917517,82917566,82917565,82917566,50,+,CGCCAGATTAATCACACCGAATTCTCCATCCAGATATTGCGTGCAGGCCG,"Intron (Tcf20-204/Tcf20, intron 1 of 1)",15,82856793,82963558,106766,2,Tcf20-204,45992,Tcf20-204;Tcf20-203,Tcf20;Tcf20,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,13,21411,ENSMUSG00000041852,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4875,cg16366505,-0.0000011,0.00000139,-0.791666162,0.429160686,loss,ns,-0.00000161,0.00000237,-0.680524356,0.496680449,neg,ns,0.00083854,0.000693034,1.209954437,0.2272182,pos,ns,0.643556884,-0.0000417,0.0000238,-1.750288219,0.081057888,neg,ns,0.948591066,Pbrm1,Pbrm1_Exon,14,31110417,31110466,31110417,31110418,50,+,CGGGCAGCTAAAGTTGCTGAGCAGCAGGAGAGAGAGCGAGCAGCACAGCA,"Exon (Pbrm1-208/Pbrm1, exon 29 of 33)",14,31019138,31120041,100904,1,Pbrm1-208,91279,Pbrm1-208;Pbrm1-207;Pbrm1-206;Pbrm1-203;Pbrm1-217;Pbrm1-212;Pbrm1-202;Pbrm1-205;Pbrm1-210;Pbrm1-201;Pbrm1-204;Smim4-204;Smim4-202,Pbrm1;Pbrm1;Pbrm1;Pbrm1;Pbrm1;Pbrm1;Pbrm1;Pbrm1;Pbrm1;Pbrm1;Pbrm1;Smim4;Smim4,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,5,66923,ENSMUSG00000042323,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4006,cg05072035,-0.00000237,0.00000121,-1.957758971,0.051155143,loss,ns,-0.0000014,0.00000206,-0.680308372,0.49681698,neg,ns,0.000674836,0.000602358,1.120324025,0.263442896,pos,ns,0.579313508,0.00000558,0.0000207,0.269233624,0.787929015,pos,ns,0.974443101,Slmap,Slmap_Exon,14,26416223,26416272,26416223,26416224,50,-,CGAAACACCAAAACAGGAAAGCCAGGAATAGGCCGATGAATACGGCTGGG,"Exon (Slmap-203/Slmap, exon 23 of 24)",14,26413168,26534931,121764,2,Slmap-203,118659,Slmap-203;Slmap-205;Slmap-215;Slmap-201;Slmap-202;Slmap-204;Slmap-212;Slmap-213,Slmap;Slmap;Slmap;Slmap;Slmap;Slmap;Slmap;Slmap,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,7,83997,ENSMUSG00000021870,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23670,cg25071551,0.0000239,0.00000453,5.276189445,0.000000248,gain,yes,-0.00000523,0.00000769,-0.680278371,0.496835946,neg,ns,0.006110272,0.00225412,2.710713409,0.007087916,pos,ns,2.149481423,-0.0000412,0.0000775,-0.531656598,0.595344623,neg,ns,0.904229673,Ptbp2,Ptbp2_Exon,3,119724612,119724661,119724612,119724613,50,-,CGAAGAGGGTAAACAGACTTTGGGGCGTAACCATCTTTAGAAGGAGAGAA,"Exon (Ptbp2-201/Ptbp2, exon 10 of 14)",3,119718742,119783388,64647,2,Ptbp2-201,58727,Ptbp2-201;Ptbp2-213;Ptbp2-208;Ptbp2-206;Ptbp2-204;Ptbp2-211;Ptbp2-202,Ptbp2;Ptbp2;Ptbp2;Ptbp2;Ptbp2;Ptbp2;Ptbp2,0;0;0;0;0;-225;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,13,56195,ENSMUSG00000028134,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12919,cg16139770,-0.00000122,0.000000924,-1.318415138,0.188337967,loss,ns,0.00000107,0.00000157,0.680218606,0.49687373,pos,ns,0.000362799,0.000459861,0.788932351,0.430754484,pos,ns,0.365770193,-0.0000181,0.0000158,-1.142585929,0.254092232,neg,ns,0.023664571,Arid5b,Arid5b_fiveUTR,10,68278682,68278731,68278682,68278683,50,+,CGAAATACCTGGAGTGAGTTGGGCTCCATCTCGACGTTCTGAATTGATTG,Promoter (<=1kb),10,68096016,68278721,182706,2,Arid5b-201,0,Arid5b-204;Arid5b-201;Arid5b-202,Arid5b;Arid5b;Arid5b,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,33,71371,ENSMUSG00000019947,conserved gene but different region,10,68278648,68278717,70,*,70,8,0.685714286,1.062618596,0.114285714,0.000000774,CpGisland,TRUE,NA,NRS
5119,cg14481339,-0.0000101,0.00000439,-2.289706171,0.022710053,loss,ns,-0.00000508,0.00000747,-0.680176722,0.49690021,neg,ns,0.0000617,0.002187128,0.028188716,0.977529775,pos,ns,0.009870006,-0.000109763,0.0000752,-1.459320924,0.145489341,neg,ns,0.939777776,Kcnj1,Kcnj1_Promoter,9,32372364,32372413,32372364,32372365,50,+,CGCCTACTCTTGTTGGATCCGGTTATAAAGTAAACTATGTTCTTTGAGAA,Promoter (<=1kb),9,32372493,32399186,26694,1,Kcnj1-201,-80,Kcnj1-201,Kcnj1,-80,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,1,56379,ENSMUSG00000041248,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1285,cg23597501,0.0000113,0.0000108,1.046016697,0.296368239,gain,ns,0.0000125,0.0000184,0.680022478,0.496997734,pos,ns,-0.008454559,0.005383344,-1.570503335,0.117318148,neg,ns,0.930634802,0.000042,0.000185133,0.226797886,0.82073039,pos,ns,0.596121253,Gm14521,Gm14521_Intergenic_downstream,X,12175409,12175458,12175457,12175458,50,+,GCTGAGAAAGCCCCTTTTCAAACAGCGGAAACTCCCTTTGCCTTCTGTCG,Distal Intergenic,20,12179718,12180067,350,2,Gm14521-201,4609,Gm14521-201,Gm14521,4609,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9613,cg20417315,-0.0000179,0.00000498,-3.585181745,0.000391156,loss,ns,0.00000575,0.00000846,0.679878556,0.49708874,pos,ns,-0.001913587,0.002479496,-0.771764603,0.440841767,neg,ns,0.355717265,-0.0000769,0.0000853,-0.901594793,0.367972096,neg,ns,0.897875418,Ncam1,Ncam1_Intron,9,49531988,49532037,49531988,49531989,50,-,CGTGGACGACATCATCAGCACCATGCAAGCCACATGACAAAGTCACATGA,"Intron (Gm11149-204/Gm11149-204, intron 2 of 5)",9,49502136,49798925,296790,2,Ncam1-204,266888,Ncam1-204;Ncam1-205;Ncam1-202;Ncam1-201;Ncam1-206;Ncam1-203,Ncam1;Ncam1;Ncam1;Ncam1;Ncam1;Ncam1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,16,17967,ENSMUSG00000039542,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25299,cg08759838,-0.0000121,0.00000488,-2.485539826,0.013462365,loss,ns,-0.00000564,0.00000829,-0.679826078,0.497121926,neg,ns,0.011299338,0.002428683,4.652453909,0.00000487,pos,ns,5.312880204,-0.000235754,0.0000835,-2.822646228,0.005070791,neg,ns,0.93502737,Lrp6,Lrp6_Exon,6,134541700,134541749,134541748,134541749,50,+,CAAAATAAAACTTTTCGTAAAGATCCATCTAAATTAGAAACTTCAATCCG,Promoter (<=1kb),6,134540774,134541714,941,2,Lrp6-205,0,Lrp6-201;Lrp6-203;Lrp6-205,Lrp6;Lrp6;Lrp6,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,11,16974,ENSMUSG00000030201,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18377,cg14794633,0.00000974,0.00000699,1.394329004,0.164216749,gain,ns,0.00000807,0.0000119,0.679802582,0.497136786,pos,ns,0.006272587,0.00347711,1.803965661,0.072207305,pos,ns,1.141418867,-0.0000696,0.000119578,-0.582172939,0.56087335,neg,ns,0.897541703,Col1a1,Col1a1_Exon,11,94951161,94951210,94951161,94951162,50,-,CGCCTGATGTCCACCGAGGCCTCCCAGAACATCACCTACCACTGCAAGAA,"Exon (Col1a1-201/Col1a1, exon 50 of 51)",11,94936224,94953042,16819,1,Col1a1-201,14937,Col1a1-201,Col1a1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,12842,ENSMUSG00000001506,conserved gene and region,11,94951051,94951215,165,*,165,14,0.6,0.987179487,0.084848485,5.32E-10,CpGisland,TRUE,U11,Tr-P
2851,cg12911558,0.000213934,0.0000188,11.39258613,2.37E-25,gain,yes,-0.0000217,0.0000319,-0.679797888,0.497139754,neg,ns,0.026325866,0.00934619,2.816748425,0.00516243,pos,ns,2.287145812,-0.000651455,0.000321415,-2.026835276,0.043534894,neg,ns,0.379270855,Zfp503,Zfp503_Promoter,14,21991241,21991290,21991289,21991290,50,-,AAATGCCTTGAACTATTCACTGTCGAGATGGCTAATCAGTATTGAGGCCG,Promoter (1-2kb),14,21983959,21989601,5643,2,Zfp503-201,-1689,Zfp503-201,Zfp503,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,18,27,218820,ENSMUSG00000039081,mapped to different genes,14,21991208,21991513,306,*,306,17,0.513071895,0.84502924,0.055555556,3.96E-09,CpGisland,TRUE,NA,NRS
3868,cg24242146,0.00000358,0.00000719,0.498171345,0.618716514,gain,ns,0.0000083,0.0000122,0.679711049,0.497194672,pos,ns,-0.008054781,0.003578266,-2.251029294,0.025084014,neg,ns,1.600602968,0.000295215,0.000123056,2.399020665,0.017029303,pos,ns,0.831665563,Dmrt2,Dmrt2_Intergenic_upstream,19,25654592,25654641,25654592,25654593,50,-,CGTGTTGCCAATCCATCATGCTCCTAATACTAATTAACATAGCAGGGACA,Distal Intergenic,19,25672411,25678991,6581,1,Dmrt2-201,-17819,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,226049,ENSMUSG00000048138,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9907,cg09327310,-0.0000157,0.00000924,-1.696692252,0.090758639,loss,ns,0.0000107,0.0000157,0.679684587,0.497211408,pos,ns,-0.013491198,0.004598897,-2.933572603,0.003600777,neg,ns,2.44360374,0.000191332,0.000158156,1.209771078,0.227288469,pos,ns,0.843539675,Ppargc1a,Ppargc1a_Exon,5,51498150,51498199,51498150,51498151,50,-,CGTCTTCATCCACAGGGAGACTGTCTAGTGTCTCTGTGAGGACTGCTAGC,"Exon (Ppargc1a-203/Ppargc1a, exon 3 of 13)",5,51454250,51553922,99673,2,Ppargc1a-203,55723,Ppargc1a-203;Ppargc1a-201;Ppargc1a-205;Ppargc1a-204;Ppargc1a-202,Ppargc1a;Ppargc1a;Ppargc1a;Ppargc1a;Ppargc1a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,13,19017,ENSMUSG00000029167,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9551,cg04735541,0.00000135,0.00000177,0.761885293,0.446707714,gain,ns,-0.00000204,0.000003,-0.679619739,0.497252422,neg,ns,-0.000872065,0.000880127,-0.990839781,0.322536569,neg,ns,0.491421038,0.0000281,0.0000303,0.927828262,0.35421849,pos,ns,0.95208694,Mbd5,Mbd5_Exon,2,49258142,49258191,49258190,49258191,50,-,TAATAAATCAGATTCAGGCTAGCGGGAACTGTGGGATGCTCAGTCAGTCG,"Exon (Mbd5-202/Mbd5, exon 11 of 11)",2,48949508,49260558,311051,1,Mbd5-202,308634,Mbd5-202;Mbd5-203;Mbd5-201;Mbd5-215;Mbd5-204,Mbd5;Mbd5;Mbd5;Mbd5;Mbd5,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,10,109241,ENSMUSG00000036792,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5703,cg22158106,-0.0000012,0.00000127,-0.945700685,0.345037802,loss,ns,-0.00000146,0.00000215,-0.679548206,0.497297666,neg,ns,-0.000842706,0.000629692,-1.338283661,0.181784731,neg,ns,0.740442599,0.0000241,0.0000217,1.113188751,0.266489795,pos,ns,0.974063746,Mapkap1,Mapkap1_Intron,2,34602289,34602338,34602289,34602290,50,-,CGTCTTGCTATCGAGCGGTTCTGCATGACTAGTTAAAGAAGATGGCAAGA,"Intron (Mapkap1-204/Mapkap1, intron 9 of 10)",2,34406862,34623475,216614,1,Mapkap1-204,195427,Mapkap1-204;Mapkap1-202;Mapkap1-201;Mapkap1-209;Mapkap1-203,Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,59,227743,ENSMUSG00000038696,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20975,cg14883717,0.0000559,0.00000701,7.968357814,3.10E-14,gain,yes,-0.0000081,0.0000119,-0.679531308,0.497308354,neg,ns,0.000844327,0.003490684,0.241879967,0.809033101,pos,ns,0.092033709,-0.0000764,0.000120044,-0.63652302,0.524905292,neg,ns,0.033993797,Spry2,Spry2_Promoter,14,105897324,105897373,105897324,105897325,50,-,CGTCATGTGGATCCGAGGCGGAACAGAGCAGTTGTTGTCCCAGAGGATAT,Promoter (<=1kb),14,105891947,105896819,4873,2,Spry2-201,-554,Spry2-201,Spry2,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,8,12,24064,ENSMUSG00000022114,conserved gene and region,14,105896882,105897547,666,*,666,86,0.741741742,0.95483871,0.129129129,5.47E-76,CpGisland,TRUE,U1,Pr-A
5146,cg11075418,-0.00000459,0.00000193,-2.381946798,0.01782438,loss,ns,-0.00000222,0.00000327,-0.679311207,0.497447582,neg,ns,-0.000602195,0.00095826,-0.628425396,0.530188025,neg,ns,0.275570085,0.0000062,0.000033,0.188079875,0.850937091,pos,ns,0.042636751,Fli1,Fli1_fiveUTR,9,32541226,32541275,32541226,32541227,50,+,CGAGCCCCCCAATATTCCACACATTGACCCGGTTACAGCCTGACCTCGCA,Promoter (<=1kb),9,32422204,32541595,119392,2,Fli1-201,320,Fli1-201;Fli1-202,Fli1;Fli1,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,15,14247,ENSMUSG00000016087,mapped to different genes,9,32540473,32541408,936,*,936,84,0.681623932,0.774834437,0.08974359,1.46E-59,CpGisland,TRUE,U1,Pr-A
649,cg14781244,0.0000141,0.00000569,2.473199571,0.013926734,gain,ns,0.00000657,0.00000967,0.679286609,0.497463143,pos,ns,0.011651529,0.002831868,4.114432019,0.0000498,pos,ns,4.302849644,-0.000361544,0.0000974,-3.71241896,0.000243337,neg,ns,0.184303759,Egflam,Egflam_Intergenic_upstream,15,7480303,7480352,7480303,7480304,50,+,CGTGGTGTTTGAGCCCTTGGGGCCTGTGGAGTTTACAAGTATGCTGTCAA,Distal Intergenic,15,7206583,7398395,191813,2,Egflam-204,-81908,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,268780,ENSMUSG00000042961,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17446,cg09535543,0.00000209,0.00000163,1.278271311,0.202110022,gain,ns,-0.00000188,0.00000277,-0.679217726,0.497506721,neg,ns,-0.000218474,0.000811894,-0.269091439,0.788038325,neg,ns,0.103452661,-0.0000165,0.0000279,-0.5917999,0.554415923,neg,ns,0.961671728,Ankrd17,Ankrd17_Exon,5,90295702,90295751,90295750,90295751,50,-,CCATAAGAGGGGTATGACCATTTTCATTATGGTCCTCAATACTAGCACCG,"Exon (Ankrd17-201/Ankrd17, exon 6 of 34)",5,90227166,90366577,139412,2,Ankrd17-201,70826,Ankrd17-201;Ankrd17-203;Ankrd17-202;Ankrd17-205;Ankrd17-212;Ankrd17-214;Ankrd17-210,Ankrd17;Ankrd17;Ankrd17;Ankrd17;Ankrd17;Ankrd17;Ankrd17,0;0;0;0;0;0;-570,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,11,12,81702,ENSMUSG00000055204,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8091,cg21526720,0.0000801,0.00000702,11.41045213,2.06E-25,gain,yes,-0.0000081,0.0000119,-0.679055524,0.497609344,neg,ns,0.011439626,0.003495596,3.272582165,0.001186001,pos,ns,2.925915126,-0.000100255,0.000120213,-0.833972146,0.40493883,neg,ns,0.175504527,Pax2,Pax2_Intergenic_upstream,19,44734508,44734557,44734508,44734509,50,+,CGATGATAAATATGATAATTTGTATAAAATCTGAATGGGTCTTGTTTTCA,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-21488,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,19,44734344,44734509,166,*,166,19,0.728915663,1.030718954,0.114457831,5.57E-16,CpGisland,TRUE,U13,Hc-P
19392,cg18205518,0.0000962,0.0000213,4.5254044,0.0000086,gain,ns,-0.0000245,0.0000361,-0.678990916,0.497650223,neg,ns,0.033640405,0.01058231,3.178928184,0.001627496,pos,ns,2.788480018,-0.000792595,0.000363925,-2.17790782,0.030166419,neg,ns,0.404479329,Foxp1,Foxp1_Intron,6,99206834,99206883,99206882,99206883,50,-,AAATTGCTAGCTATTTATGTATACGCTCAAATAAATTAGCCATTTCATCG,"Intron (Foxp1-206/Foxp1, intron 2 of 17)",6,98925338,99266515,341178,2,Foxp1-206,59632,Foxp1-206;Foxp1-204;Foxp1-220;Foxp1-221;Foxp1-222;Foxp1-223;Foxp1-202;Foxp1-211;Foxp1-212;Foxp1-224,Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,87,108655,ENSMUSG00000030067,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
10058,cg01471217,0.000000908,0.000000812,1.117628565,0.264591058,gain,ns,0.000000937,0.00000138,0.678985831,0.497653441,pos,ns,0.000810144,0.000404149,2.004568092,0.045878614,pos,ns,1.33838971,-0.0000315,0.0000139,-2.267394852,0.02405436,neg,ns,0.022164705,Maml3,Maml3_fiveUTR,3,52104769,52104818,52104817,52104818,50,+,TGGGGGAAGTAAACACATGGACAGTCCGAGGCGACTGCAAAAGTAGATCG,Promoter (<=1kb),3,51685907,52105076,419170,2,Maml3-202,258,Maml3-202,Maml3,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,14,32,433586,ENSMUSG00000061143,conserved gene and region,3,52104757,52105132,376,*,376,44,0.686170213,1.011741683,0.117021277,5.57E-37,CpGisland,TRUE,U1,Pr-A
7853,cg08722395,-0.00000659,0.00000251,-2.630740345,0.008945572,loss,ns,-0.00000289,0.00000426,-0.678910833,0.497700897,neg,ns,-0.000275492,0.001247495,-0.220836313,0.825365265,neg,ns,0.083353812,0.0000119,0.0000429,0.276800357,0.782117876,pos,ns,0.943861926,Gtdc1,Gtdc1_Intergenic_downstream,2,44554955,44555004,44555003,44555004,50,-,AAAATAGTGGCATGATTGACCAAACTCCTTTTAAAAGTACACATATTACG,Distal Intergenic,2,44565133,44571347,6215,2,Gtdc1-207,16392,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,43,227835,ENSMUSG00000036890,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1412,cg27698932,-0.0000102,0.00000992,-1.032572458,0.302608902,loss,ns,0.0000114,0.0000169,0.678832115,0.497750709,pos,ns,-0.006574401,0.004937332,-1.331569667,0.18397992,neg,ns,0.735229575,0.000331532,0.000169794,1.952546437,0.051773135,pos,ns,0.581879326,Rpl36-ps3,Rpl36-ps3_Intergenic_upstream,12,12725130,12725179,12725178,12725179,50,-,ATTTAGACTGACTGTTTGCACTGCAGACTGCGGCCACTGGGTTCCCGGCG,Distal Intergenic,12,12912022,12912336,315,1,Rpl36-ps3-201,-186892,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,19,20,100043215,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2064,cg13288931,0.000105159,0.0000138,7.635516118,2.81E-13,gain,yes,-0.0000159,0.0000234,-0.678807795,0.497766099,neg,ns,0.008049668,0.006854634,1.174339598,0.241160353,pos,ns,0.617694089,-0.0000863,0.00023573,-0.365936365,0.714662151,neg,ns,0.240461797,Gm38154,Gm38154_Exon,3,17795700,17795749,17795748,17795749,50,+,ACCTTGATTTAATGTCATACAATTAAGGCACGCGGTGAATGCCAAGAGCG,"Exon (Mir124a-2-201/Mir124a-2-201, exon 1 of 1)",3,17670688,17671027,340,1,Gm38154-201,125012,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,15,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
25824,cg23490170,0.0000156,0.00000524,2.968919716,0.003221589,gain,ns,0.00000604,0.0000089,0.678668493,0.497854257,pos,ns,-0.002344199,0.002607871,-0.898893601,0.369407,neg,ns,0.432494879,0.0000738,0.0000897,0.823000209,0.411140511,pos,ns,0.090657528,Uncx,Uncx_Intergenic_downstream,5,139580653,139580702,139580653,139580654,50,-,CGCTACTCCCGCGATTAAATGTCTCTCAGCCTAACACCTATGGGACCTGG,Distal Intergenic,5,139543898,139545268,1371,1,Uncx-202,36804,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,59,88,22255,ENSMUSG00000029546,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
22005,cg14309106,-0.00000462,0.00000317,-1.455423936,0.146563832,loss,ns,-0.00000366,0.00000539,-0.678615216,0.497887977,neg,ns,-0.001045307,0.001579922,-0.661619316,0.508706696,neg,ns,0.293532546,-0.0000429,0.0000543,-0.790191822,0.43001979,neg,ns,0.878808613,Map4,Map4_threeUTR,9,110081835,110081884,110081883,110081884,50,+,CTGCAGATTGAGACCTACAGGCTGACGTTCCGGGCAAATGCCAGGGCCCG,3' UTR,9,109931460,110083955,152496,1,Map4-201,150375,Dhx30-201;Dhx30-215;Dhx30-219;Dhx30-212;Dhx30-218;Dhx30-220;Dhx30-214;Dhx30-203;Dhx30-204;Dhx30-202;Dhx30-224;Dhx30-226;Dhx30-209;Map4-201;Map4-205;Map4-204;Map4-214;Map4-203;Map4-213;Map4-215;Map4-211;Map4-212;Map4-208;Map4-217;Map4-216,Dhx30;Dhx30;Dhx30;Dhx30;Dhx30;Dhx30;Dhx30;Dhx30;Dhx30;Dhx30;Dhx30;Dhx30;Dhx30;Map4;Map4;Map4;Map4;Map4;Map4;Map4;Map4;Map4;Map4;Map4;Map4,19203;0;0;0;3107;3166;0;0;0;0;0;3631;5570;0;0;0;0;0;0;0;13011;0;4235;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,2,17758,ENSMUSG00000032479,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18280,cg20120100,0.0000179,0.0000125,1.431204446,0.153378953,gain,ns,0.0000144,0.0000212,0.678592052,0.497902638,pos,ns,-0.00219471,0.006212612,-0.353266811,0.72412853,neg,ns,0.140184341,0.0000325,0.000213651,0.152327993,0.87902734,pos,ns,0.620319113,Gm48316,Gm48316_Intergenic_upstream,13,94680478,94680527,94680478,94680479,50,+,CGTTCTCTATTACAGAGATAAATAGCTTTGGGCTAACTGTCAACGAAAAC,Distal Intergenic,13,94752270,94752593,324,1,Gm48316-201,-71743,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,36,42,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3703,cg27281235,0.000101789,0.0000638,1.594800298,0.111775868,gain,ns,0.0000736,0.000108431,0.678573584,0.497914326,pos,ns,0.098987875,0.031766528,3.116106217,0.0020041,pos,ns,2.698080643,-0.002898506,0.001092448,-2.653220483,0.008383596,neg,ns,0.47287637,Dock8,Dock8_Exon,19,25095504,25095553,25095552,25095553,50,+,AAACTAAAACTCCAAGCTGAATCCTTCTGCCAGCGTTTGGGGAAATACCG,"Exon (Dock8-201/Dock8, exon 11 of 48)",19,24999534,25202432,202899,1,Dock8-201,95970,Dock8-201,Dock8,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,76088,ENSMUSG00000052085,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23171,cg27647480,0.0000145,0.00000572,2.538313141,0.011627957,gain,ns,-0.0000066,0.00000973,-0.678398958,0.498024859,neg,ns,0.006120579,0.00284926,2.148129622,0.032478099,pos,ns,1.488409393,-0.000139377,0.000098,-1.422424995,0.155908333,neg,ns,0.846810615,Rnf220,Rnf220_Intron,4,117380107,117380156,117380107,117380108,50,-,CGTGCAGTTAGCTCCTGATATATAACTGCTCATTAGTATTATAATAAAGT,"Intron (Rnf220-201/Rnf220, intron 2 of 14)",4,117271463,117497052,225590,2,Rnf220-201,116896,Rnf220-201;Rnf220-202;Rnf220-207,Rnf220;Rnf220;Rnf220,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17239,cg14678442,-0.0000261,0.0000293,-0.89282585,0.372642985,loss,ns,0.0000337,0.0000497,0.678321717,0.498073754,pos,ns,-0.00733028,0.014565361,-0.503268001,0.615133256,neg,ns,0.211030793,0.000917712,0.000500902,1.832120908,0.067892655,pos,ns,0.404195209,Nog,Nog_threeUTR,11,89301072,89301121,89301072,89301073,50,-,CGTATAATACTGACCTTTTAATAAGTAAATTAAAACTGGGACCGTATATA,3' UTR,11,89300638,89302332,1695,2,Nog-201,1211,Nog-201,Nog,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,36,18121,ENSMUSG00000048616,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
1473,cg10807447,-0.0000605,0.0000111,-5.449741238,0.000000103,loss,yes,0.0000128,0.0000188,0.678308735,0.498081972,pos,ns,-0.014562492,0.005522337,-2.637016312,0.008785373,neg,ns,2.056239789,0.000254993,0.000189913,1.342684593,0.180356446,pos,ns,0.784085028,Usp9x,Usp9x_Exon,X,13132172,13132221,13132220,13132221,50,-,AGTATGCTAACCAGAAATAACTTCCTACCGAATGCAGATATGGAAACTCG,"Exon (Usp9x-201/Usp9x, exon 23 of 45)",20,13071514,13173328,101815,1,Usp9x-201,60658,Usp9x-201;Usp9x-207;Usp9x-202,Usp9x;Usp9x;Usp9x,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,10,22284,ENSMUSG00000031010,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20062,cg26746066,0.0000355,0.00000729,4.871512223,0.00000177,gain,yes,0.0000084,0.0000124,0.678027629,0.49825994,pos,ns,0.006025598,0.003628787,1.660498911,0.097825205,pos,ns,1.009549236,-0.0000946,0.000124794,-0.75787257,0.449102999,neg,ns,0.709076759,Rundc3a,Rundc3a_Exon,11,102398132,102398181,102398132,102398133,50,+,CGGGGCTTTTGGGACTATATCCGGCTGGCCTGCAGCAAAGTGCCCAACAA,"Exon (Rundc3a-202/Rundc3a, exon 3 of 11)",11,102393403,102401754,8352,1,Rundc3a-202,4729,Rundc3a-202;Rundc3a-203;Rundc3a-204;Rundc3a-201;Rundc3a-209;Rundc3a-205;Rundc3a-210;Rundc3a-208;Rundc3a-206;Rundc3a-207;Slc25a39-202;Slc25a39-201;Slc25a39-205;Slc25a39-213,Rundc3a;Rundc3a;Rundc3a;Rundc3a;Rundc3a;Rundc3a;Rundc3a;Rundc3a;Rundc3a;Rundc3a;Slc25a39;Slc25a39;Slc25a39;Slc25a39,0;0;0;0;0;0;0;0;0;-1677;9308;9363;6312;9325,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,6,51799,ENSMUSG00000006575,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
18760,cg00263654,-0.000139028,0.0000207,-6.715389797,8.96E-11,loss,yes,0.0000238,0.0000352,0.677948984,0.498309737,pos,ns,-0.01285425,0.010304037,-1.247496435,0.213157092,neg,ns,0.671300214,-0.000375603,0.000354355,-1.059962719,0.28998671,neg,ns,0.620581781,Bcl9,Bcl9_threeUTR,3,97203701,97203750,97203749,97203750,50,-,AGCTCTGGCGAGTGGTTTTGTACCAAATTTAATGGAGGTTACACAGAACG,3' UTR,3,97203662,97227364,23703,2,Bcl9-201,23614,Bcl9-201;Bcl9-207,Bcl9;Bcl9,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,10,77578,ENSMUSG00000038256,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13381,cg04192879,0.0000481,0.0000158,3.052619042,0.002464972,gain,ns,-0.0000181,0.0000268,-0.677859688,0.49836628,neg,ns,-0.023478188,0.007840597,-2.994438564,0.002970957,neg,ns,2.527103599,0.001033116,0.000269637,3.831501211,0.000154187,pos,ns,0.536232255,Nr2f2,Nr2f2_Exon,7,70354677,70354726,70354725,70354726,50,-,GCCAGTTGAAGCTGCTCCCAGACAGTAACATATCGCGGATGAGAGTTTCG,"Exon (Nr2f2-201/Nr2f2, exon 3 of 3)",7,70351944,70360593,8650,2,Nr2f2-201,5867,Nr2f2-201;Nr2f2-203;Nr2f2-202;Nr2f2-205;Nr2f2-204;Nr2f2-206,Nr2f2;Nr2f2;Nr2f2;Nr2f2;Nr2f2;Nr2f2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,24,69,11819,ENSMUSG00000030551,mapped to different genes,7,70354695,70354858,164,*,164,11,0.536585366,0.993939394,0.067073171,0.000000682,CpGisland,TRUE,NA,NRS
25295,cg18599626,0.0000537,0.000019,2.820198792,0.005108638,gain,ns,-0.0000219,0.0000323,-0.677783605,0.49841446,neg,ns,0.049085785,0.009472342,5.182011432,0.000000396,pos,ns,6.401927286,-0.001507018,0.000325753,-4.626257729,0.00000548,neg,ns,0.416228616,Lrp6,Lrp6_Exon,6,134479745,134479794,134479745,134479746,50,-,CGGCTCCAGTCCGTCCAGTAGATATAATCTTGGTACTGAGTTAAGCCAAA,"Exon (Lrp6-201/Lrp6, exon 12 of 23)",6,134446476,134566913,120438,2,Lrp6-201,87119,Lrp6-201,Lrp6,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,11,16974,ENSMUSG00000030201,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21149,cg16029938,-0.00000564,0.00000576,-0.978478238,0.328600819,loss,ns,-0.00000663,0.00000978,-0.677771362,0.498422213,neg,ns,0.003611422,0.002866424,1.259905231,0.208651201,pos,ns,0.68057911,-0.000276474,0.0000986,-2.804672199,0.005354777,neg,ns,0.928111178,Gm17304,Gm17304_Intron,5,106564762,106564811,106564762,106564763,50,+,CGCATTTTCCTTGCAAATACTTTTGAAATTGCTCTACTGGTAGCAGTATA,"Intron (Gm28050-202/Gm28050-202, intron 1 of 2)",5,106609098,106609201,104,1,Gm17304-201,-44287,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,35,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22745,cg00993368,-0.0000241,0.0000213,-1.133011361,0.258085002,loss,ns,-0.0000245,0.0000362,-0.677721022,0.498454092,neg,ns,0.082051899,0.010608403,7.73461362,1.47E-13,pos,yes,12.83369106,-0.002895413,0.000364822,-7.936506298,3.84E-14,neg,yes,0.386982379,6430628N08Rik,6430628N08Rik_Intergenic_downstream,4,115904578,115904627,115904578,115904579,50,+,CGGCCACGCTTTATTAAATTCTCATAAACCTGTCAGGGGGGACAGGGCTC,Distal Intergenic,4,115890666,115899227,8562,1,6430628N08Rik-202,13912,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,76237,ENSMUSG00000034185,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
666,cg12813831,-0.000112978,0.0000168,-6.71016397,9.24E-11,loss,yes,0.0000194,0.0000286,0.677615033,0.498521217,pos,ns,-0.031018859,0.008379891,-3.701582769,0.000253507,neg,ns,3.596010564,0.000526076,0.000288184,1.825486923,0.068889601,pos,ns,0.680945229,Gm11794,Gm11794_Intergenic_downstream,4,7596364,7596413,7596412,7596413,50,+,GCAAAACAAAAATAACTCAACAAGAGTTTAACAGCCCTTCTTTATGTACG,Distal Intergenic,4,7763264,7763500,237,2,Gm11794-201,167087,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,5,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23643,cg07056345,-0.00000943,0.0000046,-2.048917377,0.041311812,loss,ns,0.0000053,0.00000782,0.677448176,0.4986269,pos,ns,0.0000305,0.002291167,0.013299065,0.989397749,pos,ns,0.004629082,-0.0000383,0.0000788,-0.486476157,0.626973342,neg,ns,0.927622035,Acvr2b,Acvr2b_Exon,9,119427988,119428037,119428036,119428037,50,+,GGAGAACCCCCAGGTGTACTTCTGCTGCTGTGAAGGCAACTTCTGCAACG,"Exon (Acvr2b-202/Acvr2b, exon 3 of 10)",9,119402118,119433515,31398,1,Acvr2b-202,25870,Acvr2b-202;Acvr2b-201;Acvr2b-205;Acvr2b-206;Acvr2b-203;Acvr2b-204,Acvr2b;Acvr2b;Acvr2b;Acvr2b;Acvr2b;Acvr2b,0;0;0;-2309;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,6,11481,ENSMUSG00000061393,conserved gene and region,9,119427852,119428057,206,*,206,11,0.640776699,0.524537037,0.053398058,0.00000611,CpGisland,TRUE,U11,Tr-P
10398,cg25734334,3.73E-08,0.0000004,0.093147197,0.925846793,gain,ns,0.000000461,0.00000068,0.677354676,0.498686126,pos,ns,0.000622183,0.000199264,3.122411356,0.00196296,pos,ns,2.707088586,-0.000015,0.00000685,-2.194494328,0.028941492,neg,ns,0.010069922,Ext1,Ext1_fiveUTR,15,53345490,53345539,53345538,53345539,50,+,TCTCTGGATGCCTTTCCCCAAGCCGTGGACTGATCCAGCGCATGTGGGCG,Promoter (<=1kb),15,53064038,53346159,282122,2,Ext1-201,620,Ext1-201;Ext1-203,Ext1;Ext1,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,16,14042,ENSMUSG00000061731,conserved gene and region,15,53345444,53345890,447,*,447,30,0.568232662,0.837706147,0.067114094,6.59E-18,CpGisland,TRUE,U1,Pr-A
4464,cg11144628,-3.45E-08,0.00000128,-0.026836644,0.978607293,loss,ns,-0.00000148,0.00000218,-0.677237846,0.498760134,neg,ns,-0.001478141,0.000639082,-2.312913822,0.021381807,neg,ns,1.669955599,0.0000129,0.000022,0.586817198,0.557753579,pos,ns,0.048357107,Sox4,Sox4_Promoter,13,28953833,28953882,28953833,28953834,50,+,CGTGCAATGAGAAGCTCCAAATCTGACCTCATTCCAATTTACAGAGCAAA,Promoter (<=1kb),13,28948919,28953713,4795,2,Sox4-201,-120,Sox4-201,Sox4,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,12,20677,ENSMUSG00000076431,conserved gene and region,13,28953710,28953834,125,*,125,10,0.56,1.214771623,0.08,0.000000531,CpGisland,TRUE,U2,Pr-W
14109,cg08806153,0.0000659,0.00000861,7.655207022,2.47E-13,gain,yes,0.0000099,0.0000146,0.677219251,0.498771915,pos,ns,0.013082572,0.004282849,3.05464242,0.002448893,pos,ns,2.611030156,-0.000120452,0.000147287,-0.817807347,0.414095326,neg,ns,0.075454934,Hoxd11,Hoxd11_Intron,2,74682222,74682271,74682270,74682271,50,+,GGCGTCACGTGACATAATTACCACCAGAATCAATCAAGATGAATTGCACG,"Intron (Hoxd11-201/Hoxd11, intron 1 of 1)",2,74679557,74687016,7460,1,Hoxd11-201,2665,Hoxd11-201;Hoxd11-202;Hoxd12-201,Hoxd11;Hoxd11;Hoxd12,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,14,15431,ENSMUSG00000042499,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2677,cg13841070,0.00000962,0.00000548,1.755944785,0.080085355,gain,ns,0.0000063,0.0000093,0.677198774,0.498784887,pos,ns,0.002362624,0.002725585,0.866831791,0.386704619,pos,ns,0.41262064,-0.0000508,0.0000937,-0.541647814,0.588450218,neg,ns,0.492620169,Magef1,Magef1_Intron,16,21293296,21293345,21293296,21293297,50,+,CGCCTGGGGGGGACTGTAACGCTAAACACATTAGTGTGTGAGATTGAAAG,"Intron (Gm16863-201/Gm16863-201, intron 1 of 4)",16,21332646,21333129,484,2,Magef1-202,39784,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,3,76222,ENSMUSG00000116632,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1338,cg23848517,0.0000235,0.00000987,2.380138297,0.017910481,gain,ns,0.0000113,0.0000168,0.677100148,0.498847371,pos,ns,0.007481719,0.004910207,1.523707487,0.128601258,pos,ns,0.890754784,-0.0000282,0.000168862,-0.166883295,0.867570679,neg,ns,0.610210121,Cadps,Cadps_Intron,14,12388823,12388872,12388871,12388872,50,-,AATAAATCTGCAAGTAGCACACTGATTGTGGCACATTTTATCAAAAAACG,"Intron (Cadps-210/Cadps, intron 27 of 28)",14,12372563,12823053,450491,2,Cadps-210,434181,Cadps-210;Cadps-202;Cadps-203;Cadps-204;Cadps-201;Cadps-212;Cadps-208,Cadps;Cadps;Cadps;Cadps;Cadps;Cadps;Cadps,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,34,27062,ENSMUSG00000054423,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5557,cg08903766,-0.000000725,0.00000116,-0.624482122,0.532770331,loss,ns,-0.00000134,0.00000197,-0.677041295,0.498884658,neg,ns,0.00047117,0.000577882,0.815340185,0.415503591,pos,ns,0.381425219,-0.0000216,0.0000199,-1.086367262,0.278160548,neg,ns,0.968104392,Pbx3,Pbx3_Intron,2,34254193,34254242,34254241,34254242,50,-,AGCAATATGGTTGCACTTGTGTCACAGTTGGAAGCCTTTTTAAACTGTCG,"Intron (Pbx3-202/Pbx3, intron 2 of 7)",2,34171457,34372038,200582,2,Pbx3-202,117796,Pbx3-202;Pbx3-201;Pbx3-210;Pbx3-206;Pbx3-207;Pbx3-209;Pbx3-204;Pbx3-205;Pbx3-203,Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,82,18516,ENSMUSG00000038718,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21995,cg22669570,-0.0000361,0.0000152,-2.379636014,0.017934459,loss,ns,-0.0000174,0.0000258,-0.676996875,0.498912802,neg,ns,-0.006602304,0.007549321,-0.874555981,0.382492583,neg,ns,0.417376982,-0.0000547,0.000259621,-0.210796961,0.833184205,neg,ns,0.715543715,Cdh7,Cdh7_threeUTR,1,110048870,110048919,110048870,110048871,50,+,CGAAGGGGCAAGTTCCATTTTCATTATTGATGAGAACACTGGGGATATTC,3' UTR,1,109982710,110140157,157448,1,Cdh7-202,66160,Cdh7-202;Cdh7-204;Cdh7-209;Cdh7-201,Cdh7;Cdh7;Cdh7;Cdh7,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,241201,ENSMUSG00000026312,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2126,cg02982690,0.000016,0.00000325,4.936945775,0.0000013,gain,yes,0.00000374,0.00000552,0.676927478,0.498956774,pos,ns,0.002923391,0.001617117,1.807779806,0.071609913,pos,ns,1.145026851,-0.0000134,0.0000556,-0.24076645,0.809895287,neg,ns,0.028376457,Bhlhe22,Bhlhe22_fiveUTR,3,18054324,18054373,18054324,18054325,50,-,CGTTAACCTGATTGGGTAGAAAGCGCTGTCCCAACAGGCGAGTCTTCTTC,Promoter (<=1kb),3,18054174,18057517,3344,1,Bhlhe22-201,150,Bhlhe22-201,Bhlhe22,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,9,22,59058,ENSMUSG00000025128,mapped to different genes,3,18054268,18054363,96,*,96,8,0.458333333,1.590062112,0.083333333,0.00000859,CpGisland,TRUE,U3,Pr-B
16009,cg00519284,0.000000803,0.00000225,0.356152202,0.721968844,gain,ns,-0.00000259,0.00000383,-0.676834553,0.499015657,neg,ns,0.000847352,0.001121538,0.755526869,0.450506585,pos,ns,0.346298856,0.00000841,0.0000386,0.218034522,0.827545667,pos,ns,0.956265534,Trim2,Trim2_Exon,3,84193329,84193378,84193329,84193330,50,-,CGACACATGGCAGTCTCACAGGACTGGCAGTAAAATTCCATCACCTGTGG,"Exon (Trim2-204/Trim2, exon 4 of 12)",3,84160439,84304809,144371,2,Trim2-204,111431,Trim2-204;Trim2-203;Trim2-206;Trim2-205;Trim2-202;Trim2-208;Trim2-201;Trim2-213;Trim2-212;Trim2-218;Trim2-207;Trim2-209;Trim2-215,Trim2;Trim2;Trim2;Trim2;Trim2;Trim2;Trim2;Trim2;Trim2;Trim2;Trim2;Trim2;Trim2,0;0;0;0;0;0;0;-2806;0;-1781;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,4,80890,ENSMUSG00000027993,conserved gene and region,3,84193215,84193340,126,*,126,9,0.650793651,0.681081081,0.071428571,0.00000623,CpGisland,TRUE,NA,NRS
387,cg24890690,-0.0000246,0.00000602,-4.087068701,0.0000557,loss,ns,-0.00000692,0.0000102,-0.67670882,0.499095334,neg,ns,-0.002331666,0.002995587,-0.778366983,0.436946389,neg,ns,0.359571846,-0.0000496,0.000103018,-0.481144403,0.630753298,neg,ns,0.953053063,Zfhx4,Zfhx4_Intron,3,5348406,5348455,5348454,5348455,50,-,CTCTCCTTCTGTCATTATTTTCAGCATCAATTAATTTTCTTCTGACCTCG,"Intron (Zfhx4-203/Zfhx4, intron 4 of 10)",3,5218526,5413165,194640,1,Zfhx4-203,129880,Zfhx4-203;Zfhx4-201;Zfhx4-205,Zfhx4;Zfhx4;Zfhx4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,27,77,80892,ENSMUSG00000025255,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12898,cg19834403,0.00000322,0.00000176,1.830767322,0.068095096,gain,ns,-0.00000202,0.00000299,-0.676623757,0.499149242,neg,ns,-0.0000842,0.000876498,-0.096043805,0.923547839,neg,ns,0.034540603,-0.00000689,0.0000301,-0.228583776,0.819343149,neg,ns,0.962469864,Stx8,Stx8_Intron,11,68146127,68146176,68146127,68146128,50,+,CGGGATCTGTCTTTCACTTAGACTTAATTAAGAAACTTGCTGGCTTTGTC,"Intron (Stx8-201/Stx8, intron 7 of 7)",11,67966193,68207148,240956,1,Stx8-201,179934,Stx8-201;Stx8-204,Stx8;Stx8,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,55943,ENSMUSG00000020903,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15898,cg05409038,-0.00000538,0.00000151,-3.562003194,0.000425872,loss,ns,0.00000174,0.00000256,0.676561339,0.499188801,pos,ns,0.001957268,0.000751445,2.604672382,0.009639395,pos,ns,2.015950212,-0.0000545,0.0000258,-2.108054027,0.035828713,neg,ns,0.063084214,Tex261,Tex261_fiveUTR,6,83775678,83775727,83775726,83775727,50,-,CCTGGATGAAGAGCGACAGCCAGCTCAGCAGGTACATGAACCACATGGCG,Promoter (<=1kb),6,83768885,83775813,6929,2,Tex261-201,86,Tex261-201;Tex261-202;Tex261-203;Tex261-204,Tex261;Tex261;Tex261;Tex261,0;0;-3203;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,1,21766,ENSMUSG00000014748,conserved gene and region,6,83775507,83775920,414,*,414,56,0.72705314,1.024118738,0.135265701,5.61E-51,CpGisland,TRUE,U1,Pr-A
6645,cg04704458,-0.0000123,0.0000069,-1.787994066,0.074753557,loss,ns,0.00000793,0.0000117,0.676554092,0.499193394,pos,ns,-0.0000922,0.003432138,-0.026849856,0.978596764,neg,ns,0.009396225,-0.0000803,0.000118031,-0.680732605,0.496548827,neg,ns,0.848710255,Uri1,Uri1_Intergenic_downstream,7,37910028,37910077,37910076,37910077,50,+,CTCCCTTATATCTGTCAGAATTAATAACTTCCCCATCACAGATAACTCCG,Distal Intergenic,7,37961301,37962528,1228,2,Uri1-203,52451,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,19,27,19777,ENSMUSG00000030421,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12384,cg09204130,0.0000217,0.00000379,5.724981312,2.44E-08,gain,yes,0.00000436,0.00000644,0.67653881,0.49920308,pos,ns,0.004478955,0.001886727,2.373928641,0.01820891,pos,ns,1.739716044,-0.000158804,0.0000649,-2.447488759,0.014940127,neg,ns,0.086499086,Ctnna3,Ctnna3_Exon,10,64087910,64087959,64087910,64087911,50,+,CGCTGGTCTCCGTGTTGGTGGGTTTATAATCTACATAAAATTCCTGGGTG,"Exon (Lrrtm3-201/Lrrtm3, exon 2 of 3)",10,63430098,65002965,1572868,1,Ctnna3-203,657812,Ctnna3-203;Ctnna3-202;Ctnna3-201;Lrrtm3-201;Lrrtm3-202;Lrrtm3-204;Lrrtm3-203,Ctnna3;Ctnna3;Ctnna3;Lrrtm3;Lrrtm3;Lrrtm3;Lrrtm3,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,11,216033,ENSMUSG00000060843,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7907,cg10259984,0.00000484,0.00000221,2.19132477,0.029172184,gain,ns,-0.00000254,0.00000375,-0.676436868,0.499267693,neg,ns,-0.001875526,0.001099032,-1.706524512,0.088911914,neg,ns,1.05104004,0.0000252,0.0000378,0.667115909,0.505194353,pos,ns,0.942099765,Hif1an,Hif1an_Intron,19,44631498,44631547,44631546,44631547,50,+,CCTCCATTTAGCACCTGAAGGTAATTAGCTCGAAGAGACTGCCGAGTGCG,"Intron (Gm35460-201/Gm35460-201, intron 3 of 6)",19,44562850,44576274,13425,1,Hif1an-201,68648,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,31,319594,ENSMUSG00000036450,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24924,cg26394231,-0.00002,0.0000038,-5.259482938,0.00000027,loss,yes,0.00000437,0.00000646,0.676323981,0.499339249,pos,ns,0.001146649,0.001893275,0.605643144,0.545194895,pos,ns,0.263448219,-0.000104764,0.0000651,-1.609034773,0.108626595,neg,ns,0.933396351,Khdrbs1,Khdrbs1_threeUTR,4,129715971,129716020,129715971,129715972,50,+,CGAAGAAAAACACTTAGACAATTACTTGTCTGTTGTGGGTAAAGCAACAG,3' UTR,4,129703164,129742297,39134,2,Khdrbs1-202,26277,Khdrbs1-202;Khdrbs1-204;Khdrbs1-201,Khdrbs1;Khdrbs1;Khdrbs1,0;-2151;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,2,20218,ENSMUSG00000028790,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18268,cg22660876,0.000000786,0.00000273,0.288323274,0.773291975,gain,ns,-0.00000313,0.00000463,-0.676208395,0.499412521,neg,ns,0.000743542,0.001356621,0.548083753,0.584028838,pos,ns,0.233565708,-0.0000484,0.0000467,-1.03719262,0.300454444,neg,ns,0.955713636,Dyrk1a,Dyrk1a_fiveUTR,16,94659565,94659614,94659613,94659614,50,+,GGCCTTCAGATGGCTGGACAGATGCCCCATTCACATCAGTACAGTGACCG,5' UTR,16,94570010,94695067,125058,1,Dyrk1a-202,89555,Dyrk1a-202;Dyrk1a-203;Dyrk1a-205;Dyrk1a-206;Dyrk1a-201,Dyrk1a;Dyrk1a;Dyrk1a;Dyrk1a;Dyrk1a,0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,14,13548,ENSMUSG00000022897,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3975,cg04329261,-0.00000896,0.00000304,-2.950878032,0.003410309,loss,ns,-0.00000349,0.00000516,-0.676082767,0.499492165,neg,ns,-0.000634987,0.001512034,-0.419955695,0.674808733,neg,ns,0.170819306,-0.0000548,0.000052,-1.054566684,0.292444759,neg,ns,0.957376976,Gm47750,Gm47750_Intergenic_upstream,12,26086904,26086953,26086904,26086905,50,-,CGTAGGTGTTTTATTCAAAATAAAGTTTGGGAAAAATAAATTGAACAGAT,Distal Intergenic,12,26150316,26150513,198,1,Gm47750-201,-63412,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9588,cg27196484,-0.0000111,0.00000461,-2.407605121,0.016641495,loss,ns,-0.00000529,0.00000783,-0.675954328,0.499573599,neg,ns,-0.005430678,0.00229482,-2.366494209,0.018571948,neg,ns,1.731142532,0.0000189,0.0000789,0.239397222,0.810955786,pos,ns,0.913708686,Arhgap36,Arhgap36_Intron,X,49446045,49446094,49446045,49446046,50,-,CGTCAATTGGGGGATGGAGTAATGTTTCCCAGATGCCATTTGGCACCTGG,"Intron (Gm14697-201/Gm14697-201, intron 1 of 3)",20,49463945,49496508,32564,1,Arhgap36-203,-17900,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,5,75404,ENSMUSG00000036198,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4538,cg24987024,-0.00000401,0.00000412,-0.972030135,0.331793382,loss,ns,-0.00000473,0.000007,-0.675787338,0.499679486,neg,ns,-0.007023792,0.002051367,-3.423956279,0.000700188,neg,ns,3.154785114,0.000116162,0.0000705,1.646600249,0.100653569,pos,ns,0.83795764,Ccdc88a,Ccdc88a_Exon,11,29498499,29498548,29498499,29498500,50,+,CGGGTAAAAGGAGAAAAGAATTGGGAGCTATGGCCTTCTCTACTACAGCC,"Exon (Ccdc88a-201/Ccdc88a, exon 26 of 32)",11,29373658,29510808,137151,1,Ccdc88a-201,124841,Ccdc88a-201;Ccdc88a-208;Ccdc88a-203;Ccdc88a-205;Ccdc88a-206,Ccdc88a;Ccdc88a;Ccdc88a;Ccdc88a;Ccdc88a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,6,108686,ENSMUSG00000032740,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11432,cg07441704,0.0000267,0.0000114,2.342046205,0.019811053,gain,ns,-0.0000131,0.0000194,-0.67562657,0.499781438,neg,ns,0.004929471,0.00568106,0.867702598,0.386228347,pos,ns,0.413155855,-0.000518249,0.000195371,-2.652635466,0.008397809,neg,ns,0.7551683,Fbn2,Fbn2_Exon,18,58081403,58081452,58081403,58081404,50,+,CGGCTGTCCTGGATGTTGAGCCAACAGGTCCCCTTCAGGCTGTCTGAAAA,"Exon (Fbn2-201/Fbn2, exon 21 of 65)",18,58008623,58210487,201865,2,Fbn2-201,129035,Fbn2-201;Fbn2-203,Fbn2;Fbn2,0;9525,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,3,14119,ENSMUSG00000024598,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16147,cg26753700,0.00000505,0.00000488,1.03484295,0.301548847,gain,ns,-0.0000056,0.00000828,-0.675617485,0.499787199,neg,ns,-0.003787095,0.002426787,-1.560538583,0.119652923,neg,ns,0.922076687,0.000144854,0.0000835,1.735673496,0.083615252,pos,ns,0.916133819,Bnc2,Bnc2_Intron,4,84529582,84529631,84529630,84529631,50,+,CACTGCTGTCCCTCGCTCCCTCTAATGAGAGCAGATGAATTAGTGCTACG,"Intron (Bnc2-201/Bnc2, intron 3 of 7)",4,84275095,84675034,399940,2,Bnc2-201,145403,Bnc2-201;Bnc2-202;Bnc2-214;Bnc2-215;Bnc2-206;Bnc2-211;Bnc2-217;Bnc2-207;Bnc2-212;Bnc2-203;Bnc2-209;Bnc2-221;Bnc2-204;Bnc2-220,Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,91,242509,ENSMUSG00000028487,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19212,cg03602189,-0.00000739,0.00000181,-4.084127109,0.0000564,loss,ns,0.00000208,0.00000307,0.675575383,0.499813901,pos,ns,0.001157603,0.000900029,1.286183611,0.199338778,pos,ns,0.700408209,-0.0000468,0.000031,-1.510823185,0.131852143,neg,ns,0.047783466,Msl1,Msl1_Exon,11,98796469,98796518,98796469,98796470,50,+,CGGCTCGGGAGCCTCCAGTCAGGCCGCCTGCCTCAAACAGATCCTTCTGC,Promoter (<=1kb),11,98795516,98807859,12344,1,Msl1-201,953,Msl1-201;Msl1-203;Msl1-204;Msl1-202;Msl1-205,Msl1;Msl1;Msl1;Msl1;Msl1,0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,11,13,74026,ENSMUSG00000052915,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
2282,cg11925076,-0.0000371,0.00000492,-7.546363989,5.02E-13,loss,yes,0.00000565,0.00000836,0.675366982,0.499946082,pos,ns,-0.004750817,0.002450008,-1.939103164,0.053395983,neg,ns,1.272491415,0.000163787,0.0000843,1.943925269,0.052809023,pos,ns,0.95256436,Meis1,Meis1_Exon,11,18941680,18941729,18941680,18941681,50,+,CGCCCTCATGATATTTGTGGCTACTTTGGGAAAGATGCCACGCTTTTTGT,"Exon (Meis1-206/Meis1, exon 8 of 10)",11,18879817,19018985,139169,2,Meis1-206,77256,Meis1-206;Meis1-202;Meis1-209;Meis1-201;Meis1-203;Meis1-208;Meis1-207,Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,21,88,17268,ENSMUSG00000020160,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26582,cg00686910,0.00000389,0.00000311,1.254060554,0.210764808,gain,ns,-0.00000356,0.00000528,-0.675310387,0.499981981,neg,ns,0.002089588,0.00154557,1.351985896,0.177365375,pos,ns,0.751131158,-0.0000641,0.0000532,-1.205591294,0.228894521,neg,ns,0.94509828,Casz1,Casz1_Intron,4,148930461,148930510,148930461,148930462,50,-,CGCAGCCACATAATTATGCATGTAAGATATAAACAGAGCTGTTTAATTAT,"Intron (Casz1-201/Casz1, intron 5 of 15)",4,148804429,148945129,140701,1,Casz1-201,126032,Casz1-201;Casz1-202;Casz1-206;Casz1-204,Casz1;Casz1;Casz1;Casz1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,94,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24840,cg16277100,-0.0000744,0.0000136,-5.481321017,8.76E-08,loss,yes,0.0000156,0.0000231,0.675273091,0.500005639,pos,ns,-0.017196696,0.006754292,-2.546039653,0.011378969,neg,ns,1.943897084,0.000273717,0.00023228,1.178393164,0.239543643,pos,ns,0.600392006,Gm4410,Gm4410_Intron,3,128850258,128850307,128850258,128850259,50,+,CGACATCTCTATTATAGATGAAAGGTAAACAAAGCAGATGAAGGATTAGT,"Intron (Gm43824-201/Gm43824-201, intron 4 of 4)",3,128839836,128840521,686,1,Gm4410-201,10422,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,13,100043393,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27807,cg13733512,-0.0000133,0.00000397,-3.36246937,0.000869322,loss,ns,0.00000455,0.00000674,0.675235297,0.500029613,pos,ns,-0.002357967,0.001975066,-1.193867379,0.233442621,neg,ns,0.631819849,0.00000949,0.0000679,0.139658504,0.889020504,pos,ns,0.954725695,Esrrg,Esrrg_Intron,1,187862606,187862655,187862606,187862607,50,+,CGTAAAAAATTAGCAAGCTGGAAGTCGTTAGAAGGAGTTCCACTGGCATT,"Intron (Esrrg-204/Esrrg, intron 3 of 3)",1,187608791,188043502,434712,1,Esrrg-204,253815,Esrrg-204;Esrrg-203,Esrrg;Esrrg,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,60,26381,ENSMUSG00000026610,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4003,cg18411550,0.00000786,0.00000234,3.363815008,0.000865245,gain,ns,-0.00000268,0.00000397,-0.675214029,0.500043105,neg,ns,0.001937797,0.001162924,1.666315031,0.096660729,pos,ns,1.014749936,-0.0000728,0.00004,-1.82074142,0.069610139,neg,ns,0.01069719,L3mbtl3,L3mbtl3_Exon,10,26375940,26375989,26375988,26375989,50,-,CGTCTCACGAGTAGTCCTGACAAATGGTCCAGGGCTGCGGGCGCAATGCG,Promoter (<=1kb),10,26333858,26375971,42114,2,L3mbtl3-204,0,L3mbtl3-202;L3mbtl3-201;L3mbtl3-203;L3mbtl3-204,L3mbtl3;L3mbtl3;L3mbtl3;L3mbtl3,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,6,237339,ENSMUSG00000039089,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
520,cg02697105,-0.00000819,0.0000088,-0.930854529,0.352653149,loss,ns,-0.0000101,0.000015,-0.675204573,0.500049104,neg,ns,-0.015873498,0.004380229,-3.623896949,0.000339031,neg,ns,3.469760679,0.000152333,0.000150636,1.01126924,0.312676239,pos,ns,0.759284403,St18,St18_Intron,1,6757619,6757668,6757667,6757668,50,+,AATGAATGTAGAAATTATTCCTGGATAGAAACACGGACATTTCCCACTCG,"Intron (St18-208/St18, intron 4 of 23)",1,6487231,6860934,373704,1,St18-208,270388,St18-208;St18-204;St18-201;St18-206;St18-203;St18-210;St18-212;St18-207;St18-213,St18;St18;St18;St18;St18;St18;St18;St18;St18,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,20,240690,ENSMUSG00000033740,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23698,cg24091037,0.0000263,0.0000046,5.713068994,0.000000026,gain,yes,0.00000527,0.00000782,0.674897148,0.500244147,pos,ns,0.000911034,0.0022897,0.39788351,0.690989912,pos,ns,0.160528293,0.0000103,0.0000787,0.130974826,0.895880177,pos,ns,0.898747117,Mga,Mga_Exon,2,119935412,119935461,119935412,119935413,50,-,CGTGTGAAAATCTCTATGCCATCATGTCAAGACCAAGATGATATGGCTGA,Promoter (<=1kb),2,119935452,119941541,6090,1,Mga-213,0,Mga-201;Mga-202;Mga-203;Mga-204;Mga-215;Mga-208;Mga-214;Mga-213,Mga;Mga;Mga;Mga;Mga;Mga;Mga;Mga,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,9,29808,ENSMUSG00000033943,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17583,cg15030128,-0.0000691,0.0000118,-5.868484707,1.13E-08,loss,yes,0.0000135,0.00002,0.674840918,0.500279826,pos,ns,-0.013945876,0.005862387,-2.378873257,0.017970926,neg,ns,1.745429547,0.000171925,0.000201607,0.852775355,0.394442273,pos,ns,0.787995769,Madd,Madd_threeUTR,2,91138715,91138764,91138763,91138764,50,+,TGTCTTGTACTTGTGGCTCACCACTTCTTTAATTTCAGGAACTAAAACCG,3' UTR,2,91137360,91179315,41956,2,Madd-211,40551,Madd-211;Madd-212;Madd-206;Madd-207;Madd-208;Madd-213;Madd-205;Madd-203;Madd-204;Madd-209;Madd-210;Madd-214;Madd-202;Madd-215;Madd-216;Madd-224;Madd-226;Madd-227;Madd-228;Madd-218;Madd-221;Mybpc3-201;Mybpc3-202;Mybpc3-203,Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Mybpc3;Mybpc3;Mybpc3,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;16187;13727;20571;20571;20571,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,7,228355,ENSMUSG00000040687,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8529,cg21715576,0.00000716,0.00000126,5.70065784,2.78E-08,gain,yes,-0.00000144,0.00000213,-0.674742059,0.500342557,neg,ns,-0.000462784,0.000625206,-0.740210759,0.459732348,neg,ns,0.337494937,0.0000113,0.0000215,0.527884163,0.597957378,pos,ns,0.034085968,Btrc,Btrc_Intron,19,45302357,45302406,45302357,45302358,50,-,CGCCCCTCCATTATACGTTAATGTAATCAGCAGTGTGCGAAATGACTGCG,"Intron (Gm28578-211/Gm28578-211, intron 1 of 1)",19,45363734,45507736,144003,1,Btrc-204,-61377,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,63,98,12234,ENSMUSG00000025217,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
1390,cg19125497,-0.000000441,0.0000083,-0.053131422,0.957661417,loss,ns,-0.00000952,0.0000141,-0.67466595,0.500390855,neg,ns,-0.008256956,0.004131877,-1.998354968,0.046551323,neg,ns,1.332067971,-0.000042,0.000142095,-0.295558391,0.767765222,neg,ns,0.697917035,Cadps,Cadps_Exon,14,12616094,12616143,12616094,12616095,50,+,CGTCCATCCAGCTCTCGTCTGATCTGGGCTGCTTGCTCATCTGGATTGTC,"Exon (Cadps-210/Cadps, exon 4 of 29)",14,12372563,12823053,450491,2,Cadps-210,206910,Cadps-210;Cadps-202;Cadps-203;Cadps-204;Cadps-201;Gm17805-201,Cadps;Cadps;Cadps;Cadps;Cadps;Gm17805,0;0;0;0;0;-2525,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,34,27062,ENSMUSG00000054423,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9525,cg09716123,-0.0000559,0.0000143,-3.898762869,0.000118549,loss,ns,-0.0000164,0.0000244,-0.674642305,0.50040586,neg,ns,0.023391709,0.007140883,3.275744391,0.001173245,pos,ns,2.930611286,-0.000691193,0.000245574,-2.814596291,0.005196243,neg,ns,0.1630741,Nav2,Nav2_Intron,7,49159136,49159185,49159184,49159185,50,-,TCCCCTAATCAGGATGGAGACGCAGTTCATTACAAGCTGGTGAGGCAACG,"Intron (Nav2-204/Nav2, intron 2 of 39)",7,48959097,49606821,647725,1,Nav2-204,200039,Nav2-204,Nav2,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,7,78286,ENSMUSG00000052512,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14091,cg01749491,0.0000506,0.00000651,7.779319914,1.09E-13,gain,yes,-0.00000746,0.0000111,-0.67463343,0.500411493,neg,ns,0.00733414,0.003237756,2.265192647,0.024190734,pos,ns,1.616350953,-0.000187215,0.000111346,-1.681377688,0.093696695,neg,ns,0.147276117,Evx2,Evx2_Promoter,2,74659561,74659610,74659609,74659610,50,+,GATGCCAGAGCGAGGGAATGACTGGTCAAAATGACCCATACATCCTTCCG,Promoter (<=1kb),2,74652991,74659557,6567,2,Evx2-201,-4,Evx2-201;Evx2-202,Evx2;Evx2,0;-142,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,9,35,14029,ENSMUSG00000001815,conserved gene and region,2,74659459,74659676,218,*,218,14,0.5,1.031778229,0.064220184,2.09E-08,CpGisland,TRUE,U13,Hc-P
14630,cg14061953,-0.00000435,0.00000547,-0.793956852,0.427827881,loss,ns,0.00000627,0.0000093,0.674599622,0.500432948,pos,ns,-0.00218523,0.002724568,-0.8020466,0.423140397,neg,ns,0.37351551,0.0000336,0.0000937,0.358676351,0.720081368,pos,ns,0.814507517,Ttn,Ttn_Exon,2,76975078,76975127,76975078,76975079,50,+,CGGTAGAACTTCACCACAGGTGTAGGGATTCCAGTCACTCTCACTTGGAG,"Exon (Ttn-201/Ttn, exon 4 of 191)",2,76703980,76982455,278476,2,Ttn-201,7328,Ttn-201;Ttn-203;Ttn-205;Ttn-204;Ttn-202;Ttn-207;Ttn-215;Ttn-217,Ttn;Ttn;Ttn;Ttn;Ttn;Ttn;Ttn;Ttn,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,12,22138,ENSMUSG00000051747,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13109,cg04600154,-0.00000864,0.00000433,-1.994875899,0.04693164,loss,ns,0.00000496,0.00000736,0.674252692,0.500653147,pos,ns,0.005275117,0.002156781,2.445828392,0.01500776,pos,ns,1.823684121,-0.000155693,0.0000742,-2.099091625,0.036617308,neg,ns,0.927618161,Tcf4,Tcf4_Intron,18,69499816,69499865,69499816,69499817,50,-,CGCTGACATCATGGTGTTATAATTAAGCGTGGCATTAATTAAGCTGGAAT,"Intron (Tcf4-259/Tcf4, intron 5 of 6)",18,69343356,69564082,220727,1,Tcf4-259,156460,Tcf4-259;Tcf4-201;Tcf4-207;Tcf4-210;Tcf4-240;Tcf4-254;Tcf4-246;Tcf4-206;Tcf4-202;Tcf4-257;Tcf4-232;Tcf4-248;Tcf4-231;Tcf4-205;Tcf4-253;Tcf4-233;Tcf4-238;Tcf4-245;Tcf4-249;Tcf4-219;Tcf4-235;Tcf4-227;Tcf4-250;Tcf4-229;Tcf4-260;Tcf4-226;Tcf4-216;Tcf4-256,Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,42,66,21413,ENSMUSG00000053477,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23473,cg18950957,-0.0000115,0.00000593,-1.937776683,0.053558402,loss,ns,-0.00000679,0.0000101,-0.674223564,0.500671637,neg,ns,0.001262175,0.002951526,0.427634619,0.66921406,pos,ns,0.174434943,-0.000244034,0.000101503,-2.404211148,0.016793878,neg,ns,0.782200179,Rbfox3,Rbfox3_Intron,11,118544791,118544840,118544791,118544792,50,-,CGGATACCTCGGAGCGGAGCCAGCATGAAATATTCATGCAGTAAATGGTG,"Intron (Rbfox3-205/Rbfox3, intron 3 of 13)",11,118489762,118909550,419789,2,Rbfox3-205,364710,Rbfox3-205;Rbfox3-203;Rbfox3-201;Rbfox3-202;Rbfox3-204;Rbfox3-206;Rbfox3-209,Rbfox3;Rbfox3;Rbfox3;Rbfox3;Rbfox3;Rbfox3;Rbfox3,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,13,52897,ENSMUSG00000025576,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19506,cg04255554,-0.0000474,0.0000101,-4.668695043,0.00000452,loss,ns,0.0000116,0.0000172,0.674200277,0.50068642,pos,ns,-0.014000472,0.005048373,-2.773264406,0.005885856,neg,ns,2.230190402,0.000388561,0.000173613,2.23808449,0.025925401,pos,ns,0.748288406,Foxp1,Foxp1_Intron,6,99485650,99485699,99485698,99485699,50,-,AAGCAACAGGCATTCCCCCTCAATTGACCCACAGCTTGTAGTGTCTGCCG,"Intron (Foxp1-220/Foxp1, intron 1 of 19)",6,98929189,99520997,591809,2,Foxp1-220,35298,Foxp1-220;Foxp1-224;Foxp1-227;Foxp1-216;Gm20696-201;Gm20696-203,Foxp1;Foxp1;Foxp1;Foxp1;Gm20696;Gm20696,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,87,108655,ENSMUSG00000030067,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23128,cg14688252,-0.00000796,0.00000693,-1.150034182,0.251016194,loss,ns,-0.00000793,0.0000118,-0.674155673,0.500714735,neg,ns,-0.00819089,0.003447038,-2.376211109,0.018098713,neg,ns,1.742352316,0.000129104,0.000118543,1.089089145,0.276960488,pos,ns,0.809360047,Rnf220,Rnf220_Intron,4,117315151,117315200,117315151,117315152,50,-,CGTAAGTCATCATTTGTCAGGATTAATAGGCATCCCTGGTTGAGGAGGTA,"Intron (Rnf220-201/Rnf220, intron 2 of 14)",4,117271463,117497052,225590,2,Rnf220-201,181852,Rnf220-201;Rnf220-202;Rnf220-207,Rnf220;Rnf220;Rnf220,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,4,117314991,117315152,162,*,162,10,0.5,0.995085995,0.061728395,0.0000055,CpGisland,TRUE,U13,Hc-P
7528,cg03717151,0.0000423,0.00000919,4.59865685,0.0000062,gain,ns,-0.0000105,0.0000156,-0.674141016,0.50072404,neg,ns,0.009385771,0.00457478,2.051633052,0.041045206,pos,ns,1.386737563,-0.000229737,0.000157326,-1.46026001,0.145231321,neg,ns,0.219407495,Sobp,Sobp_threeUTR,10,43020987,43021036,43021035,43021036,50,+,AACCTTTTACTTATTCTGATTTCTAATTCGGAGGCACCTCCTTTTGAGCG,3' UTR,10,43002500,43174530,172031,2,Sobp-201,153494,Sobp-201,Sobp,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,19,109205,ENSMUSG00000038248,conserved gene but different region,10,43021015,43022155,1141,*,1141,127,0.707274321,0.894808018,0.111305872,1.47E-102,CpGisland,TRUE,U3,Pr-B
4263,cg12943258,-0.00000974,0.00000463,-2.10385881,0.036196017,loss,ns,-0.0000053,0.00000787,-0.674107599,0.500745254,neg,ns,-0.005944168,0.002305125,-2.578675567,0.01037895,neg,ns,1.983846574,0.000063,0.0000793,0.794839208,0.427315141,pos,ns,0.068774485,Rfx3,Rfx3_fiveUTR,19,28011087,28011136,28011135,28011136,50,+,AACAGTCGCCAGGACTACGGTGACTATGGCGCTTGATTCACAAGGCAACG,Promoter (<=1kb),19,27768139,28011140,243002,2,Rfx3-208,4,Rfx3-201;Rfx3-208;Rfx3-204;Rfx3-205;Rfx3-207,Rfx3;Rfx3;Rfx3;Rfx3;Rfx3,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,15,19726,ENSMUSG00000040929,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
25673,cg07014677,-0.0000141,0.00000624,-2.257920353,0.024645874,loss,ns,0.00000715,0.0000106,0.674070082,0.500769072,pos,ns,-0.009610454,0.003108174,-3.091993512,0.002168875,neg,ns,2.663765538,0.00045433,0.00010689,4.250452241,0.0000283,pos,ns,0.867298569,Hp1bp3,Hp1bp3_Exon,4,138221657,138221706,138221705,138221706,50,-,CGTCCATCCTAAGGCACTCCCACTTATAGTAGGAGCTCAGCTGATCCACG,"Exon (Hp1bp3-205/Hp1bp3, exon 2 of 13)",4,138216296,138244683,28388,1,Hp1bp3-205,5361,Hp1bp3-205;Hp1bp3-210;Hp1bp3-209;Hp1bp3-204;Hp1bp3-201;Hp1bp3-202;Hp1bp3-206;Hp1bp3-203;Hp1bp3-208;Hp1bp3-214;Hp1bp3-212;Hp1bp3-207,Hp1bp3;Hp1bp3;Hp1bp3;Hp1bp3;Hp1bp3;Hp1bp3;Hp1bp3;Hp1bp3;Hp1bp3;Hp1bp3;Hp1bp3;Hp1bp3,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,15441,ENSMUSG00000028759,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19520,cg08215925,-0.00000342,0.00000216,-1.585439327,0.113886068,loss,ns,0.00000247,0.00000367,0.673979928,0.500826309,pos,ns,0.002579426,0.001074446,2.400702923,0.016952684,pos,ns,1.770761522,-0.000077,0.000037,-2.08289018,0.038080599,neg,ns,0.055879043,Gm20696,Gm20696_Intron,6,99522961,99523010,99522961,99522962,50,+,CGCGGAGGGAGATGTTGTTATTTTTTGCTGTTGTGCGTCCCTGACGTCAC,"Intron (Gm20696-201/Gm20696, intron 3 of 5)",6,99257484,99666797,409314,2,Gm20696-201,143787,Foxp1-220;Foxp1-224;Foxp1-227;Foxp1-216;Gm20696-201;Gm20696-203,Foxp1;Foxp1;Foxp1;Foxp1;Gm20696;Gm20696,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,5,,NA,mapped to different genes,6,99522539,99523073,535,*,535,68,0.674766355,1.135881104,0.127102804,1.18E-59,CpGisland,TRUE,U1,Pr-A
27690,cg25664402,-0.00000126,0.00000699,-0.180030026,0.85724662,loss,ns,0.000008,0.0000119,0.673966952,0.500834548,pos,ns,0.005180518,0.0034777,1.489639234,0.137335794,pos,ns,0.862216258,-0.000282314,0.000119598,-2.360525274,0.018868014,neg,ns,0.17584181,Akt3,Akt3_Promoter,1,177258708,177258757,177258708,177258709,50,-,CGGGGCTTGTTGTTGACTTTGAGGAAAACTCCTGACGTCAGGGGCTGGCT,Promoter (<=1kb),1,177022116,177258203,236088,2,Akt3-202,-554,Akt3-202;Akt3-204,Akt3;Akt3,0;-1116,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,14,23797,ENSMUSG00000019699,conserved gene and region,1,177258282,177259058,777,*,777,97,0.758043758,0.869568729,0.124839125,5.55E-84,CpGisland,TRUE,U1,Pr-A
22841,cg02851136,0.00000441,0.00000187,2.359683455,0.018910101,gain,ns,-0.00000214,0.00000318,-0.673958378,0.500839991,neg,ns,0.000400008,0.000930608,0.429835206,0.667614146,pos,ns,0.17547447,-0.00000302,0.000032,-0.094246498,0.924974236,neg,ns,0.960223304,Maf,Maf_Intergenic_upstream,8,116014326,116014375,116014326,116014327,50,-,CGTTACTGAAAATCAATGTGCCACATTCAAGGTCAATGTACTGTTGGAAA,Distal Intergenic,8,115701435,115707794,6360,2,Maf-202,-306581,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,23,17132,ENSMUSG00000055435,mapped to different genes,8,116014256,116014387,132,*,132,9,0.46969697,1.236212279,0.068181818,0.00000904,CpGisland,TRUE,U15,NS
1780,cg23126309,-0.0000164,0.0000138,-1.188112009,0.235698733,loss,ns,-0.0000158,0.0000234,-0.673952549,0.500843692,neg,ns,-0.007859378,0.006867688,-1.144399448,0.253340854,neg,ns,0.59629477,0.000409035,0.000236179,1.731882958,0.084289157,pos,ns,0.274211035,Foxp2,Foxp2_fiveUTR,6,15185739,15185788,15185787,15185788,50,+,ATCTTCCTAATTTTTCATCTCTTTAACAAACTCCTATGAAGTTGAAACCG,5' UTR,6,14901349,15441977,540629,1,Foxp2-207,284390,Foxp2-207;Foxp2-213;Foxp2-208;Foxp2-211;Foxp2-217;Foxp2-203;Foxp2-216;Foxp2-205;Foxp2-204;Foxp2-201;Foxp2-210,Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,65,114142,ENSMUSG00000029563,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17509,cg07806359,-0.00000565,0.00000214,-2.642164601,0.008655888,loss,ns,0.00000245,0.00000364,0.673815648,0.500930616,pos,ns,-0.00130143,0.001065017,-1.221981132,0.222643124,neg,ns,0.652390713,0.0000558,0.0000366,1.522392476,0.128930157,pos,ns,0.947523278,Nrxn1,Nrxn1_Exon,17,90621855,90621904,90621855,90621856,50,-,CGTCAACCGCATCAGAAAAGTGGTTGCAAACAGCCAAGGACCAGCACCTA,"Exon (Nrxn1-212/Nrxn1, exon 2 of 2)",17,90033631,91088907,1055277,2,Nrxn1-202,467003,Nrxn1-202;Nrxn1-207;Nrxn1-216;Nrxn1-209;Nrxn1-201;Nrxn1-206;Nrxn1-208;Nrxn1-210;Nrxn1-220;Nrxn1-224;Nrxn1-212,Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,22,27,18189,ENSMUSG00000024109,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15733,cg11413443,0.0000571,0.0000142,4.010765996,0.0000759,gain,ns,0.0000163,0.0000242,0.673766358,0.500961914,pos,ns,0.025766129,0.007090783,3.633749429,0.000326849,pos,ns,3.485652812,-0.000780907,0.000243851,-3.202388793,0.001504498,neg,ns,0.407651136,Fga,Fga_Exon,3,83032798,83032847,83032798,83032799,50,-,CGATCAAGAGACCAGTTTGGGAGGATGGCTTTTGATCCAGCAAAGAATGG,"Exon (Fga-202/Fga, exon 6 of 6)",3,83026215,83033627,7413,1,Fga-202,6583,Fga-201;Fga-202,Fga;Fga,6722;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,14161,ENSMUSG00000028001,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22687,cg18420945,0.0000104,0.00000454,2.301402716,0.022031879,gain,ns,0.00000519,0.00000771,0.673648657,0.501036656,pos,ns,0.002587832,0.002257985,1.14608013,0.252645903,pos,ns,0.597487741,-0.000056,0.0000777,-0.721805603,0.470958083,neg,ns,0.03643878,Maf,Maf_Exon,8,115705944,115705993,115705992,115705993,50,-,ACCCTCTTGAAGCGGCAGGACTGGGCATAGCCGCGGTTTTTCAGGGTCCG,"Exon (Maf-201/Maf, exon 1 of 3)",8,115682942,115707096,24155,2,Maf-201,1103,Maf-201;Maf-202,Maf;Maf,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,23,17132,ENSMUSG00000055435,conserved gene and region,8,115705919,115706789,871,*,871,113,0.732491389,0.967968135,0.129735936,6.29E-100,CpGisland,TRUE,U1,Pr-A
4717,cg19378795,-0.00000161,0.00000154,-1.048618494,0.29517058,loss,ns,-0.00000176,0.00000261,-0.673546358,0.501101623,neg,ns,-0.000399073,0.000764759,-0.521828481,0.602162394,neg,ns,0.22028637,0.0000314,0.0000263,1.192283345,0.234062024,pos,ns,0.972908216,Btbd9,Btbd9_Intron,17,30236906,30236955,30236954,30236955,50,-,CCGTCATATTTAATTACATTTTAACTATATTCGTCTTCGATAATAGCACG,"Intron (Btbd9-202/Btbd9, intron 9 of 10)",17,30215524,30576488,360965,2,Btbd9-202,339533,Btbd9-202;Btbd9-203;Btbd9-201;Btbd9-218;Btbd9-208;Btbd9-221;Btbd9-224;Btbd9-205;Btbd9-219;Btbd9-209;Btbd9-206;Btbd9-220;Btbd9-210,Btbd9;Btbd9;Btbd9;Btbd9;Btbd9;Btbd9;Btbd9;Btbd9;Btbd9;Btbd9;Btbd9;Btbd9;Btbd9,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,5,224671,ENSMUSG00000062202,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8005,cg13876625,0.0000255,0.00000609,4.190368411,0.0000364,gain,ns,-0.00000697,0.0000104,-0.673499736,0.501131232,neg,ns,-0.002663001,0.003032926,-0.878030099,0.38060738,neg,ns,0.419522795,0.000133322,0.000104302,1.278232531,0.202123673,pos,ns,0.766282434,Nepro,Nepro_Intergenic_upstream,16,44679621,44679670,44679621,44679622,50,-,CGGAATGCTACAGGGATTCATGCCTGACAGCTCGGGTAAAGGCAGGAGAA,Distal Intergenic,16,44724301,44737284,12984,1,Nepro-201,-44680,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,4,212547,ENSMUSG00000036208,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16603,cg09093115,0.0000169,0.00000298,5.681618559,3.08E-08,gain,yes,-0.00000341,0.00000507,-0.673455181,0.50115953,neg,ns,0.005399198,0.001484116,3.63798791,0.000321736,pos,ns,3.492500206,-0.00012846,0.000051,-2.516924003,0.012342744,neg,ns,0.072419011,Six3,Six3_Exon,17,85621906,85621955,85621906,85621907,50,+,CGGGAGTGGTACCTACAGGACCCCTACCCCAACCCCAGCAAGAAACGCGA,"Exon (Six3-202/Six3, exon 2 of 3)",17,85613608,85625222,11615,1,Six3-202,8298,Six3-202;Six3-203;Six3-201,Six3;Six3;Six3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,24,20473,ENSMUSG00000038805,conserved gene and region,17,85621728,85621907,180,*,180,19,0.672222222,0.934937124,0.105555556,2.86E-15,CpGisland,TRUE,U13,Hc-P
9602,cg11318004,-0.0000143,0.0000084,-1.70640756,0.0889337,loss,ns,0.00000961,0.0000143,0.673426448,0.501177779,pos,ns,0.000932067,0.004178788,0.223047314,0.823645581,pos,ns,0.084259627,-0.000151173,0.000143708,-1.051946174,0.293643535,neg,ns,0.648660901,Arhgap36,Arhgap36_Intron,X,49471594,49471643,49471642,49471643,50,+,CCTGTTTTTTCATAGTCTCCACCTCCAAAATCTATATTGGTGAGAGTGCG,"Intron (Arhgap36-203/Arhgap36, intron 1 of 6)",20,49463945,49496508,32564,1,Arhgap36-203,7649,Arhgap36-203;Arhgap36-202;Arhgap36-201,Arhgap36;Arhgap36;Arhgap36,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,5,75404,ENSMUSG00000036198,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2607,cg25757101,0.00000188,0.00000758,0.248217113,0.80413077,gain,ns,0.00000867,0.0000129,0.673411545,0.501187245,pos,ns,-0.00340981,0.003772934,-0.903755443,0.366826846,neg,ns,0.435538888,-0.000185686,0.000129751,-1.431097025,0.15340971,neg,ns,0.743775111,Cdk16,Cdk16_Exon,X,20696039,20696088,20696039,20696040,50,+,CGTGGCCTGGCCTACTGCCACCGGCAGAAGGTGCTACACCGAGACCTCAA,"Exon (Cdk16-202/Cdk16, exon 9 of 16)",20,20687954,20699880,11927,1,Cdk16-202,8085,Cdk16-202;Cdk16-206;Cdk16-201;Cdk16-207;Cdk16-203;Cdk16-204;Cdk16-208;Cdk16-205,Cdk16;Cdk16;Cdk16;Cdk16;Cdk16;Cdk16;Cdk16;Cdk16,0;0;0;0;0;0;-317;-357,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,6,18555,ENSMUSG00000031065,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17876,cg10406977,-0.0000305,0.00000924,-3.30225407,0.001071216,loss,ns,-0.0000106,0.0000157,-0.67336861,0.501214515,neg,ns,-0.006026845,0.004598043,-1.310741241,0.190915391,neg,ns,0.719159059,-0.000213654,0.000158126,-1.351157341,0.177630302,neg,ns,0.839303887,Dlg2,Dlg2_Exon,7,92286499,92286548,92286499,92286500,50,-,CGATTTGAGGCCAAAATCCATGACCTACGAGAGCAGATGATGAACCACAG,"Exon (Dlg2-217/Dlg2, exon 19 of 28)",7,90477231,92449247,1972017,1,Dlg2-217,1809268,Dlg2-217;Dlg2-204;Dlg2-209;Dlg2-201;Dlg2-220;Dlg2-218;Dlg2-219;Dlg2-203;Dlg2-202;Dlg2-206;Dlg2-212;Dlg2-208;Dlg2-207;Dlg2-214,Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,21,23859,ENSMUSG00000052572,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23573,cg20401467,-0.0000224,0.00000818,-2.737028269,0.00655753,loss,ns,0.00000935,0.0000139,0.673282385,0.501269283,pos,ns,0.020015056,0.00406956,4.918235792,0.00000142,pos,ns,5.84794076,-0.000786062,0.000139952,-5.616660094,4.33E-08,neg,yes,0.141396051,Cbx8,Cbx8_Promoter,11,119042861,119042910,119042861,119042862,50,-,CGTCGGCCGGTGCCAGCGATACAGCTGTTTCTGTTTAAGCTTAAATACTT,Promoter (1-2kb),11,119036305,119040969,4665,2,Cbx8-201,-1941,Cbx8-201;Cbx8-202;Cbx8-203,Cbx8;Cbx8;Cbx8,0;-2030;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,4,6,30951,ENSMUSG00000025578,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
94,cg07237739,-0.00000724,0.00000344,-2.103113186,0.036261635,loss,ns,0.00000394,0.00000585,0.673125055,0.501369224,pos,ns,-0.000925395,0.001713896,-0.539936674,0.589628351,neg,ns,0.229421642,-0.0000309,0.0000589,-0.52427873,0.600459348,neg,ns,0.906739529,Doc2g,Doc2g_threeUTR,19,4004592,4004641,4004640,4004641,50,-,AAGCTGGTGCCAAACCGAGCCAGGAGCTTTGACATCTGTCTGGAGAAGCG,3' UTR,19,4003313,4007005,3693,1,Doc2g-201,1279,Doc2g-201;Doc2g-204;Doc2g-203;Doc2g-206;Doc2g-202;Doc2g-205;Gm49405-201;Ndufv1-214;Ndufv1-207;Ndufv1-201;Ndufv1-213;Ndufv1-209;Ndufv1-202;Ndufv1-204;Ndufv1-206;Ndufv1-211;Ndufv1-205;Ndufv1-203;Ndufv1-208;Ndufv1-212;Nudt8-201;Nudt8-202,Doc2g;Doc2g;Doc2g;Doc2g;Doc2g;Doc2g;Gm49405;Ndufv1;Ndufv1;Ndufv1;Ndufv1;Ndufv1;Ndufv1;Ndufv1;Ndufv1;Ndufv1;Ndufv1;Ndufv1;Ndufv1;Ndufv1;Nudt8;Nudt8,0;0;0;0;0;0;0;8053;8025;8165;8027;3377;8032;5206;4499;8063;8067;8024;8118;8056;4012;3961,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,2,60425,ENSMUSG00000024871,mapped to different genes,19,4004535,4004641,107,*,107,9,0.682242991,0.729545455,0.08411215,0.00000163,CpGisland,TRUE,U11,Tr-P
398,cg23158972,-0.00000876,0.00000604,-1.448924982,0.148369301,loss,ns,-0.00000691,0.0000103,-0.673102802,0.501383361,neg,ns,-0.000788075,0.003008085,-0.261985484,0.793506628,neg,ns,0.100449441,-0.0000996,0.000103448,-0.963125862,0.336235038,neg,ns,0.894138739,Zfhx4,Zfhx4_Exon,3,5396897,5396946,5396945,5396946,50,+,CAGTTCTATCAATGTCCTTATTGTAACTACAATAGTAGGGACCAAAGTCG,"Exon (Zfhx4-203/Zfhx4, exon 8 of 11)",3,5218526,5413165,194640,1,Zfhx4-203,178371,Zfhx4-203;Zfhx4-201;Zfhx4-205,Zfhx4;Zfhx4;Zfhx4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,23,77,80892,ENSMUSG00000025255,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12303,cg08845119,-0.0000371,0.00000807,-4.600317381,0.00000616,loss,ns,0.00000923,0.0000137,0.672993397,0.501452866,pos,ns,-0.006540738,0.004019001,-1.627453592,0.104656721,neg,ns,0.980232876,0.0000671,0.000138213,0.485163738,0.627902877,pos,ns,0.855479418,Fign,Fign_Intergenic_downstream,2,63878480,63878529,63878480,63878481,50,+,CGATCCTCATCATGCAGAAATTGATGATTTAATATAGTCAATGACAGACG,Distal Intergenic,2,63980447,64097988,117542,2,Fign-202,219459,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,28,84,60344,ENSMUSG00000075324,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14172,cg22186193,0.0000913,0.0000187,4.882287749,0.00000168,gain,yes,-0.0000214,0.0000318,-0.672909961,0.501505876,neg,ns,0.014729416,0.009303823,1.583157362,0.11440523,pos,ns,0.941554123,-0.00020192,0.000319958,-0.631084479,0.528450303,neg,ns,0.322063266,Gm28230,Gm28230_Intron,2,74730638,74730687,74730638,74730639,50,+,CGGGTAAATTACAGAATCAGGTTCATCCAGAGGACAAATTTTCTATTTGA,"Intron (Hoxd3-203/Hoxd3, intron 1 of 2)",2,74726728,74747918,21191,1,Gm28230-201,3910,Gm28230-201;Hoxd3-203;Hoxd3-205;Hoxd4-203;Hoxd4-201;Hoxd4-202,Gm28230;Hoxd3;Hoxd3;Hoxd4;Hoxd4;Hoxd4,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,23,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
6078,cg17762161,0.00000293,0.00000414,0.709576422,0.478500203,gain,ns,0.00000473,0.00000702,0.672768637,0.501595672,pos,ns,0.00333947,0.002058035,1.622649809,0.105680768,pos,ns,0.97600404,-0.000149092,0.0000708,-2.10654267,0.035960667,neg,ns,0.914748668,Rpl17-ps9,Rpl17-ps9_Intergenic_upstream,7,35980788,35980837,35980788,35980789,50,+,CGTCAACATTCCTTAGGAAATACAAATATGGGCATTATTTCATGGAGATG,Distal Intergenic,7,36118274,36118828,555,1,Rpl17-ps9-201,-137437,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,14,22,100043872,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
137,cg02911492,-0.000000154,0.00000102,-0.150613161,0.880378832,loss,ns,-0.00000117,0.00000174,-0.672705885,0.501635546,neg,ns,-0.000762386,0.000509644,-1.495918348,0.135692269,neg,ns,0.867444895,0.00000988,0.0000175,0.563482238,0.573513909,pos,ns,0.976039499,Kdm2a,Kdm2a_Exon,19,4324763,4324812,4324811,4324812,50,+,GGATTGTTCTCCTTTTCCCGTACCATGGTGCGCTCTGTGGCCTGCAGCCG,"Exon (Kdm2a-201/Kdm2a, exon 17 of 21)",19,4314419,4398285,83867,2,Kdm2a-201,73473,Kdm2a-201;Kdm2a-202;Kdm2a-213;Kdm2a-211;Kdm2a-207;Kdm2a-214;Kdm2a-212;Kdm2a-210,Kdm2a;Kdm2a;Kdm2a;Kdm2a;Kdm2a;Kdm2a;Kdm2a;Kdm2a,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,21,30,225876,ENSMUSG00000054611,conserved gene and region,19,4324711,4324995,285,*,285,19,0.621052632,0.696373457,0.066666667,1.66E-11,CpGisland,TRUE,U10,Tr-S
16264,cg07399752,-0.00000979,0.00000377,-2.593104687,0.009962437,loss,ns,0.00000431,0.00000641,0.672583584,0.501713265,pos,ns,-0.003461143,0.001878719,-1.842288903,0.06638779,neg,ns,1.177911791,0.000130928,0.0000646,2.026465486,0.04357297,pos,ns,0.909232633,Mrm1,Mrm1_Intergenic_downstream,11,84686770,84686819,84686818,84686819,50,-,AGATGTATGAACTCAAGCATATAATGGCCCAACCAGCAGGCGCAAATACG,Distal Intergenic,11,84814743,84815390,648,2,Mrm1-203,128620,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,37,42,217038,ENSMUSG00000018405,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4752,cg22373137,-0.000085,0.0000145,-5.870147633,1.12E-08,loss,yes,0.0000165,0.0000246,0.672527821,0.501748703,pos,ns,-0.019822206,0.007204149,-2.751498525,0.006281412,neg,ns,2.201942694,0.000340167,0.00024775,1.373024322,0.170737121,pos,ns,0.701682674,Ptpa,Ptpa_Intron,2,30441991,30442040,30442039,30442040,50,+,CTGCTCAATATGGCTGCTCTGACTCACACGATTCCCCTGGGGTCACTGCG,"Intron (Ptpa-201/Ptpa, intron 8 of 9)",2,30416039,30447805,31767,1,Ptpa-201,25952,Ptpa-201;Ptpa-202;Ptpa-203;Ptpa-205;Ptpa-206;Ptpa-204;Ptpa-208;Ptpa-210;Ptpa-211;Ptpa-207;Ptpa-209,Ptpa;Ptpa;Ptpa;Ptpa;Ptpa;Ptpa;Ptpa;Ptpa;Ptpa;Ptpa;Ptpa,0;0;0;0;13637;0;0;-695;-1179;-3616;-3676,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,110854,ENSMUSG00000039515,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
11000,cg09446914,-0.00000969,0.00000254,-3.810619712,0.000167171,loss,ns,0.00000291,0.00000432,0.672406078,0.501826077,pos,ns,-0.001682943,0.001265835,-1.329512631,0.184656415,neg,ns,0.733635601,-0.0000499,0.0000435,-1.146090936,0.252641439,neg,ns,0.948517402,Gm28900,Gm28900_Intergenic_upstream,1,56164580,56164629,56164580,56164581,50,+,CGCACATCCTGGCAGTGCACTTCACAGTGGTGTGAAAGATAGGTTCAAAG,Distal Intergenic,1,56451407,56451562,156,1,Gm28900-201,-286778,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,12,102635907,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8899,cg24465674,0.0000172,0.00000298,5.783258983,1.79E-08,gain,yes,0.0000034,0.00000506,0.672179636,0.501970008,pos,ns,0.005036337,0.001481424,3.399660286,0.000762971,pos,ns,3.117491957,-0.0000451,0.0000509,-0.88430259,0.377218217,neg,ns,0.051490545,Helt,Helt_fiveUTR,8,46294610,46294659,46294610,46294611,50,+,CGCCGAGTGCGTTTTAAAGCCTGTCCAGAGTCATTAAAGTAATTAAGTAA,Promoter (<=1kb),8,46292039,46294671,2633,2,Helt-201,12,Helt-201;Helt-202;Helt-203,Helt;Helt;Helt,0;-621;-1275,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,7,22,234219,ENSMUSG00000047171,conserved gene but different region,8,46294426,46294620,195,*,195,22,0.666666667,1.016346837,0.112820513,2.64E-18,CpGisland,TRUE,U13,Hc-P
9198,cg13397733,-0.00000312,0.00000349,-0.893148833,0.372470292,loss,ns,-0.00000399,0.00000593,-0.672061074,0.502045378,neg,ns,-0.002609615,0.001738,-1.501504295,0.134243044,neg,ns,0.87210821,-0.0000354,0.0000598,-0.592353241,0.554045874,neg,ns,0.930568062,Cadm1,Cadm1_Intergenic_upstream,9,47506260,47506309,47506308,47506309,50,-,TGAACGCATTGATCTTCTTGGCTCTGAAAATACAGTGTAATGAACCCCCG,Distal Intergenic,9,47530173,47853385,323213,1,Cadm1-204,-23913,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,18,77,54725,ENSMUSG00000032076,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21783,cg25658054,-0.00000103,0.00000525,-0.195738729,0.844942909,loss,ns,0.000006,0.00000892,0.671953444,0.502113803,pos,ns,-0.003955413,0.00261423,-1.513031999,0.131290329,neg,ns,0.881767264,0.0000927,0.0000899,1.031464324,0.303127175,pos,ns,0.765566194,Lmo1,Lmo1_Intron,7,109154636,109154685,109154636,109154637,50,-,CGCTGAACCAGAAAACGAGAGTCTGGCAGGAGCTGCAGACACACCATGAG,"Intron (Lmo1-201/Lmo1, intron 1 of 3)",7,109138572,109170519,31948,2,Lmo1-201,15834,Lmo1-201;Lmo1-202;Lmo1-203,Lmo1;Lmo1;Lmo1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,66,109594,ENSMUSG00000036111,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21728,cg10718271,0.0000365,0.0000207,1.761990154,0.07905653,gain,ns,0.0000236,0.0000351,0.671777979,0.502225364,pos,ns,-0.001438077,0.010296827,-0.139662167,0.889017613,neg,ns,0.051089635,0.000285956,0.000354107,0.80754074,0.419974198,pos,ns,0.597442126,Slitrk1,Slitrk1_Promoter,14,108914498,108914547,108914546,108914547,50,-,ACATTTATTTCCCAATGGCTTGAATAAAATTAGTGTCAGGGTGTCAAGCG,Promoter (<=1kb),14,108908800,108914158,5359,2,Slitrk1-201,-389,Slitrk1-201,Slitrk1,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,17,76965,ENSMUSG00000075478,conserved gene but different region,14,108914546,108914638,93,*,93,8,0.430107527,1.86,0.086021505,0.00000681,CpGisland,TRUE,NA,NRS
8920,cg22143343,-0.0000126,0.00000391,-3.211128183,0.001460923,loss,ns,-0.00000447,0.00000665,-0.671698197,0.502276095,neg,ns,-0.002480436,0.001947887,-1.273398706,0.203830607,neg,ns,0.690730601,-0.0000832,0.000067,-1.241310241,0.215429612,neg,ns,0.930023315,Dlk2,Dlk2_threeUTR,17,46302568,46302617,46302568,46302569,50,+,CGCTTCTGCACCATCAACCTGGATGACTGTGCCAGCCGCCCATGCCAGAG,3' UTR,17,46297421,46303271,5851,1,Dlk2-201,5147,Abcc10-204;Abcc10-207;Abcc10-201;Abcc10-202;Dlk2-205;Dlk2-201;Dlk2-202;Dlk2-203;Dlk2-204,Abcc10;Abcc10;Abcc10;Abcc10;Dlk2;Dlk2;Dlk2;Dlk2;Dlk2,25406;25359;25362;23149;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,3,106565,ENSMUSG00000047428,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26264,cg04326641,-7.68E-08,0.000000171,-0.448646131,0.654000389,loss,ns,0.000000195,0.000000291,0.671625406,0.502322382,pos,ns,0.000216066,0.0000852,2.535105279,0.011732749,pos,ns,1.930600215,-0.00000751,0.00000293,-2.56201139,0.010879303,neg,ns,0.005242888,Bhlhe41,Bhlhe41_fiveUTR,6,145865547,145865596,145865547,145865548,50,+,CGGCCAGACCAGCACCCAGCTCACGTGCGGAACGTACCATCCGCGGTCCA,Promoter (<=1kb),6,145858243,145865558,7316,2,Bhlhe41-201,0,Bhlhe41-201;Bhlhe41-202;Bhlhe41-203,Bhlhe41;Bhlhe41;Bhlhe41,0;0;-195,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,5,79362,ENSMUSG00000030256,mapped to different genes,6,145865415,145865777,363,*,363,48,0.749311295,0.942041523,0.132231405,3.32E-43,CpGisland,TRUE,U3,Pr-B
16186,cg12827555,0.0000614,0.0000088,6.981223196,1.79E-11,gain,yes,0.00001,0.0000149,0.671480938,0.502414255,pos,ns,0.006915033,0.004379388,1.57899552,0.115356893,pos,ns,0.937956448,-0.0000757,0.000150607,-0.502474391,0.615690609,neg,ns,0.194589005,Vsx2,Vsx2_Promoter,12,84569707,84569756,84569707,84569708,50,+,CGGGAGCTGCCAGCTTTTTGGAATTCCTAATCGCTCCTGGCCCCGGTGAT,Promoter (<=1kb),12,84569762,84595457,25696,1,Vsx2-201,-6,Vsx2-201;Vsx2-202,Vsx2;Vsx2,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,20,12677,ENSMUSG00000021239,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
8301,cg11299873,0.0000991,0.0000132,7.511347805,6.30E-13,gain,yes,-0.0000151,0.0000224,-0.671259175,0.5025553,neg,ns,0.020476231,0.006569146,3.117030863,0.001998017,pos,ns,2.699400746,-0.000458635,0.000225912,-2.030146288,0.043195227,neg,ns,0.590552466,Zeb2,Zeb2_Exon,2,44988849,44988898,44988849,44988850,50,-,CGAGTCAGAGTACCCCTGAGGGGTAATGCTCTGCAAGTAAGCCCGGTTCA,"Exon (Zeb2-212/Zeb2, exon 11 of 11)",2,44983632,45117395,133764,2,Zeb2-212,128497,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,21,158,24136,ENSMUSG00000026872,conserved gene but different region,2,44988749,44988850,102,*,102,10,0.656862745,1.374663073,0.098039216,7.61E-08,CpGisland,TRUE,U12,Tr-I
10762,cg08379960,0.0000728,0.0000162,4.494864305,0.00000985,gain,ns,-0.0000185,0.0000275,-0.671191635,0.502598261,neg,ns,0.005642857,0.008065382,0.699639193,0.484677314,pos,ns,0.314547308,-0.000180299,0.000277368,-0.65003639,0.516150127,neg,ns,0.552881273,Nsd1,Nsd1_Exon,13,55213324,55213373,55213372,55213373,50,+,GTCAATCCAATTTTTCTGAGCCACTTAATGGGTGTACTATGCAGTTATCG,"Exon (Nsd1-207/Nsd1, exon 2 of 21)",13,55209782,55315755,105974,1,Nsd1-207,3542,Nsd1-207;Nsd1-201;Nsd1-203;Nsd1-204;Nsd1-206;Nsd1-209;Nsd1-211;Nsd1-205;Nsd1-208,Nsd1;Nsd1;Nsd1;Nsd1;Nsd1;Nsd1;Nsd1;Nsd1;Nsd1,0;0;0;0;0;0;0;0;938,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,7,18193,ENSMUSG00000021488,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21988,cg01334806,0.00011405,0.00000961,11.86687265,4.96E-27,gain,yes,0.000011,0.0000163,0.671115405,0.502646751,pos,ns,0.019809491,0.004783391,4.141306832,0.0000446,pos,ns,4.350937138,-0.000146785,0.0001645,-0.892309247,0.372919308,neg,ns,0.175302317,Dmrta2,Dmrta2_threeUTR,4,109983192,109983241,109983192,109983193,50,+,CGGTATTTGTCGCTCTCTTTGTTGCTTATGCCGATAAGCATGGGTTTCCT,3' UTR,4,109978053,109983687,5635,1,Dmrta2-201,5139,Dmrta2-201,Dmrta2,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,13,242620,ENSMUSG00000047143,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
19875,cg26417435,0.0000143,0.000011,1.298018387,0.195245934,gain,ns,0.0000125,0.0000187,0.671010101,0.502713741,pos,ns,-0.007869646,0.00546858,-1.439065521,0.151140876,neg,ns,0.820618066,0.000411935,0.000188064,2.19039639,0.029240056,pos,ns,0.907912322,Zmym3,Zmym3_Exon,X,101416383,101416432,101416383,101416384,50,+,CGCCGGGGCCGGAATGGCACAAAGTCCTCATCATTGGGGTCATCTACCAT,"Exon (Zmym3-203/Zmym3, exon 5 of 24)",20,101404384,101419798,15415,2,Zmym3-203,3366,Zmym3-203;Zmym3-209;Zmym3-206;Zmym3-201;Zmym3-212;Zmym3-214;Zmym3-210;Zmym3-215;Zmym3-207;Zmym3-202;Zmym3-208;Zmym3-204;Zmym3-205;Zmym3-211;Zmym3-217;Zmym3-216;Zmym3-213,Zmym3;Zmym3;Zmym3;Zmym3;Zmym3;Zmym3;Zmym3;Zmym3;Zmym3;Zmym3;Zmym3;Zmym3;Zmym3;Zmym3;Zmym3;Zmym3;Zmym3,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,7,56364,ENSMUSG00000031310,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2478,cg23478212,-0.00000441,0.00000481,-0.915132146,0.360833539,loss,ns,-0.00000549,0.00000818,-0.670985335,0.502729496,neg,ns,-0.004726818,0.002396407,-1.972460609,0.049445481,neg,ns,1.305873394,0.000131046,0.0000824,1.590129409,0.112824898,pos,ns,0.889919939,Gm4849,Gm4849_Intergenic_downstream,1,19868599,19868648,19868647,19868648,50,+,GAATGAGAAATGTTTATATGTTCTTAGTTGCTTTTAAATCTCCCTTCACG,Distal Intergenic,1,19330939,19333184,2246,1,Gm4849-201,537660,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,10,226901,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16788,cg15408048,0.00000743,0.00000357,2.083032292,0.03806755,gain,ns,0.00000407,0.00000606,0.670859798,0.502809364,pos,ns,-0.002009923,0.001776377,-1.131473301,0.258730454,neg,ns,0.587152449,0.0000876,0.0000611,1.43374043,0.152654198,pos,ns,0.934968031,Lrba,Lrba_Exon,3,86532037,86532086,86532037,86532038,50,+,CGCTGTTTGATAATTGCTAACATATGTGGCTTCTCTGTTTCATTGTAGTC,"Exon (Lrba-202/Lrba, exon 38 of 51)",3,86224680,86746712,522033,1,Lrba-202,307357,Lrba-202;Lrba-204;Lrba-201;Lrba-208,Lrba;Lrba;Lrba;Lrba,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,17,45,80877,ENSMUSG00000028080,conserved gene but different region,3,86532037,86532200,164,*,164,13,0.506097561,1.239534884,0.079268293,6.06E-09,CpGisland,TRUE,U15,NS
13631,cg02090160,0.0000385,0.00000518,7.42354163,1.11E-12,gain,yes,0.0000059,0.0000088,0.670793139,0.502851776,pos,ns,0.004608702,0.002578177,1.787581778,0.074820249,pos,ns,1.12598085,0.000018,0.0000887,0.203379843,0.838971587,pos,ns,0.199986144,Dlx2,Dlx2_Intergenic_downstream,2,71538410,71538459,71538410,71538411,50,+,CGGAAGTGTCTAATGCCACATGATTGCTGCAGCTTTAGGGGAGACATTCA,Distal Intergenic,2,71544866,71545950,1085,2,Dlx2-202,7491,Dlx1-201;Dlx1-203;Dlx2-201,Dlx1;Dlx1;Dlx2,0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,8,13392,ENSMUSG00000023391,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
17355,cg01925697,-0.0000206,0.0000144,-1.426812624,0.154640299,loss,ns,-0.0000164,0.0000245,-0.670720912,0.502897732,neg,ns,-0.014800523,0.007175724,-2.062582627,0.039985062,neg,ns,1.398102226,0.000368076,0.000246773,1.491560025,0.136831407,pos,ns,0.756163884,Ankfn1,Ankfn1_Intron,11,89824379,89824428,89824427,89824428,50,-,ACATGGTTAGTGTTTCAAATTACTGACTACTCCCTTCAGGGCCTGTCACG,"Intron (Ankfn1-208/Ankfn1, intron 2 of 21)",11,89391238,89841266,450029,2,Ankfn1-208,16838,Ankfn1-208,Ankfn1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,15,382543,ENSMUSG00000047773,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24898,cg20550411,-0.0000114,0.00000349,-3.260314978,0.001236711,loss,ns,-0.00000398,0.00000594,-0.670643062,0.502947269,neg,ns,-0.003547936,0.001739143,-2.040047981,0.042192838,neg,ns,1.374761257,-0.0000636,0.0000598,-1.064159469,0.288084658,neg,ns,0.855866864,Plpp4,Plpp4_Exon,7,129323367,129323416,129323367,129323368,50,-,CGCCCCGATTTCTTTTACCGCTGCTTTCCAGATGGAGTGATGAACTCGGA,"Exon (Plpp4-201/Plpp4, exon 5 of 7)",7,129257031,129391412,134382,1,Plpp4-201,66336,Plpp4-201;Plpp4-204;Plpp4-202;Plpp4-203,Plpp4;Plpp4;Plpp4;Plpp4,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,6,381925,ENSMUSG00000070366,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11199,cg10437271,0.0000509,0.00000755,6.743079052,7.59E-11,gain,yes,0.0000086,0.0000128,0.670577222,0.502989166,pos,ns,0.016227939,0.003758862,4.317247662,0.0000213,pos,ns,4.671939221,-0.000297458,0.000129267,-2.301111084,0.02204857,neg,ns,0.039376789,Satb2,Satb2_fiveUTR,1,56969806,56969855,56969806,56969807,50,+,CGCTCCGCCGCTCCATGCTGCTCCGACTCGGAGACAAAGTTCCCACCGGC,Promoter (<=1kb),1,56948134,56969840,21707,2,Satb2-203,0,Satb2-201;Satb2-202;Satb2-205;Satb2-203;Satb2-204,Satb2;Satb2;Satb2;Satb2;Satb2,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,9,33,212712,ENSMUSG00000038331,conserved gene but different region,1,56969620,56969894,275,*,275,29,0.705454546,0.850848181,0.105454546,4.32E-23,CpGisland,TRUE,U3,Pr-B
6410,cg12273161,-0.00000264,0.00000334,-0.790027601,0.430115545,loss,ns,-0.0000038,0.00000567,-0.670524403,0.503022778,neg,ns,-0.0000878,0.00166112,-0.05282949,0.957901792,neg,ns,0.018679014,-0.000062,0.0000571,-1.08614782,0.278257453,neg,ns,0.065629504,Pknox2,Pknox2_Exon,9,37147191,37147240,37147191,37147192,50,+,CGCCGCCGCCTGCAAAAGCGTCTCTGACATGGAAATGAATGACAGCTTAC,Promoter (<=1kb),9,36890982,37147407,256426,2,Pknox2-201,167,Pknox2-201;Pknox2-202;Pknox2-209;Pknox2-212;Pknox2-211;Pknox2-213;Pknox2-214,Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2,0;0;0;0;0;0;-1376,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,47,208076,ENSMUSG00000035934,conserved gene but different region,9,37147150,37147210,61,*,61,11,0.803278689,1.156896552,0.180327869,9.04E-12,CpGisland,TRUE,U3,Pr-B
5475,cg08410222,0.000011,0.00000666,1.658053555,0.098318154,gain,ns,-0.00000758,0.0000113,-0.670475123,0.50305414,neg,ns,0.008141569,0.003313108,2.457381035,0.014542742,pos,ns,1.837353698,-0.000205638,0.000113938,-1.804828265,0.072071841,neg,ns,0.529734316,Hdac9,Hdac9_Exon,12,34052321,34052370,34052369,34052370,50,-,CCATAGGCTCACCAGCAGTTCTGTAAAAATAAACAGGCAATCAGAATACG,"Exon (Hdac9-205/Hdac9, exon 25 of 25)",12,34047580,34528328,480749,2,Hdac9-205,475958,Hdac9-205;Hdac9-204;Hdac9-206,Hdac9;Hdac9;Hdac9,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,31,79221,ENSMUSG00000004698,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10047,cg17225945,-0.00000072,0.00000203,-0.353820948,0.723713592,loss,ns,0.00000232,0.00000346,0.670357636,0.503128911,pos,ns,0.000968445,0.001012732,0.956269508,0.339681222,pos,ns,0.468928461,0.0000109,0.0000348,0.311588712,0.755562559,pos,ns,0.077399298,Maml3,Maml3_Exon,3,52104074,52104123,52104122,52104123,50,-,TGTTCAGGCTACTGTTGATGCAAATACTACTGCCATTCGCGGCAGCAGCG,Promoter (<=1kb),3,51685907,52105076,419170,2,Maml3-202,953,Maml3-202,Maml3,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,32,433586,ENSMUSG00000061143,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
24764,cg06367851,-0.00001,0.00000226,-4.437826135,0.0000126,loss,ns,-0.00000257,0.00000383,-0.67021685,0.503218519,neg,ns,0.001941289,0.001123297,1.728206341,0.084947021,pos,ns,1.070851849,-0.0000864,0.0000386,-2.237158485,0.025986518,neg,ns,0.933573633,Ankrd52,Ankrd52_Exon,10,128386134,128386183,128386182,128386183,50,+,CCCCTCCCTGCGGGACAGGCAGGGCTACACAGCTGTGCACTATGCAGCCG,"Exon (Ankrd52-201/Ankrd52, exon 16 of 28)",10,128377119,128394006,16888,1,Ankrd52-201,9015,Ankrd52-203;Ankrd52-201;Ankrd52-202,Ankrd52;Ankrd52;Ankrd52,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,12,237615,ENSMUSG00000014498,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20539,cg07299882,-0.00000955,0.00000605,-1.579546542,0.115230537,loss,ns,-0.00000688,0.0000103,-0.670210321,0.503222674,neg,ns,-0.0044077,0.003009501,-1.464595053,0.144044805,neg,ns,0.841502401,0.0000482,0.000103496,0.465824635,0.641668144,pos,ns,0.898873916,Fam181a,Fam181a_Intron,12,103314157,103314206,103314205,103314206,50,+,ACGACTCGATTTAAGTCCCTAACTGTTTGACTACAAATGCAAGGGGACCG,"Intron (Fam181a-203/Fam181a, intron 1 of 1)",12,103310975,103317065,6091,1,Fam181a-203,3182,Fam181a-203;Fam181a-202;Fam181a-201,Fam181a;Fam181a;Fam181a,0;-747;-753,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,9,100504156,ENSMUSG00000096753,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19742,cg04798271,-0.000000896,0.00000407,-0.220284775,0.825794375,loss,ns,-0.00000463,0.00000691,-0.670080443,0.503305347,neg,ns,0.0000734,0.002024261,0.036247539,0.97110831,pos,ns,0.01273233,-0.0000291,0.0000696,-0.418546437,0.675837459,neg,ns,0.956283373,Scn8a,Scn8a_Exon,15,101011061,101011110,101011109,101011110,50,+,AGCCATGGATCCCTACTATTATTTCCAAGAAGGTTGGAACATTTTTGACG,"Exon (Scn8a-212/Scn8a, exon 15 of 15)",15,100870645,101011064,140420,1,Scn8a-212,140416,Scn8a-212;Scn8a-201;Scn8a-204;Scn8a-213;Scn8a-203;Scn8a-205;Scn8a-208;Scn8a-209,Scn8a;Scn8a;Scn8a;Scn8a;Scn8a;Scn8a;Scn8a;Scn8a,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,18,24,20273,ENSMUSG00000023033,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14757,cg04058245,-0.000000487,0.00000148,-0.328288787,0.742914953,loss,ns,0.00000169,0.00000252,0.670044124,0.503328467,pos,ns,-0.000501539,0.000739023,-0.678651975,0.497864712,neg,ns,0.302888655,0.00000526,0.0000254,0.2071064,0.836062738,pos,ns,0.957220368,Prmt9,Prmt9_Exon,8,77562441,77562490,77562441,77562442,50,-,CGATGCAGGTTTATTTGGAGAAGGAATTGTGGAGAGTTTGATTCATGCAT,"Exon (Prmt9-201/Prmt9, exon 5 of 12)",8,77549397,77581338,31942,1,Prmt9-201,13044,Prmt9-201;Prmt9-203;Prmt9-202;Prmt9-205;Prmt9-204,Prmt9;Prmt9;Prmt9;Prmt9;Prmt9,0;0;0;0;-1172,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,102182,ENSMUSG00000037134,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8673,cg12857324,-0.00000732,0.00000465,-1.575052933,0.116264181,loss,ns,-0.00000529,0.0000079,-0.669993859,0.503360465,neg,ns,-0.005028473,0.002313146,-2.173867856,0.030471467,neg,ns,1.51610664,0.000109586,0.0000795,1.377590373,0.169323508,pos,ns,0.897995743,Dscaml1,Dscaml1_Intron,9,45530713,45530762,45530713,45530714,50,+,CGGCTCCTAAGCAGGGAAACGGCATTATTATCATTAATAAGCCCATAATG,"Intron (Dscaml1-208/Dscaml1, intron 5 of 5)",9,45426628,45571224,144597,1,Dscaml1-208,104085,Dscaml1-208;Dscaml1-209;Dscaml1-202;Dscaml1-211;Dscaml1-201;Dscaml1-210,Dscaml1;Dscaml1;Dscaml1;Dscaml1;Dscaml1;Dscaml1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,32,114873,ENSMUSG00000032087,conserved gene and region,9,45530575,45530733,159,*,159,10,0.446540881,1.261904762,0.062893082,0.00000467,CpGisland,TRUE,NA,NRS
21823,cg02016833,-0.000019,0.0000059,-3.225262716,0.001392913,loss,ns,0.00000671,0.00001,0.6699369,0.503396726,pos,ns,-0.00784299,0.002935024,-2.672206217,0.007933915,neg,ns,2.100512454,0.0000653,0.000100935,0.647116658,0.518035324,pos,ns,0.892564877,Gm1943,Gm1943_Intron,8,109214303,109214352,109214303,109214304,50,-,CGAGAAAATCCAATTTGGTGAGGAGTTTTAAAAATCCCATAATAAACGCG,"Intron (D030068K23Rik-202/D030068K23Rik-202, intron 5 of 9)",8,109340691,109340864,174,2,Gm1943-201,126561,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,28,384864,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22958,cg15763339,-0.00000824,0.00000246,-3.354165884,0.000894882,loss,ns,-0.0000028,0.00000417,-0.669905407,0.503416776,neg,ns,0.000394077,0.001222663,0.322310434,0.747434783,pos,ns,0.126426695,-0.0000714,0.000042,-1.698179321,0.09047736,neg,ns,0.940760622,Pik3c2a,Pik3c2a_Exon,7,116356300,116356349,116356348,116356349,50,+,CAGATCTTATCCATAATCTTTATCATCTGTAAAGCTAACATATCTTGCCG,"Exon (Pik3c2a-201/Pik3c2a, exon 22 of 33)",7,116337265,116443449,106185,2,Pik3c2a-201,87100,Pik3c2a-201;Pik3c2a-206;Pik3c2a-204,Pik3c2a;Pik3c2a;Pik3c2a,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,18704,ENSMUSG00000030660,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3579,cg15897310,0.00000179,0.00000888,0.201928395,0.840105148,gain,ns,0.0000101,0.0000151,0.669870418,0.503439052,pos,ns,0.001363648,0.004417575,0.308687098,0.7577669,pos,ns,0.120464369,0.000146922,0.00015192,0.967099326,0.334248254,pos,ns,0.415651257,Ccn2,Ccn2_fiveUTR,10,24595409,24595458,24595457,24595458,50,+,GAGGAATGTCCCTGTTTGTGTAGGACTCCATTCAGCTCATTGGCGAGCCG,Promoter (<=1kb),10,24595442,24598678,3237,1,Ccn2-201,0,Ccn2-201;Ccn2-203;Ccn2-202,Ccn2;Ccn2;Ccn2,0;-268;-322,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,3,14219,ENSMUSG00000019997,conserved gene but different region,10,24595452,24595492,41,*,41,7,0.731707317,1.28125,0.170731707,0.00000029,CpGisland,TRUE,U3,Pr-B
4793,cg05523563,-0.00000242,0.0000069,-0.350734419,0.72602582,loss,ns,-0.00000785,0.0000117,-0.669781596,0.503495602,neg,ns,0.00307966,0.003433569,0.896926757,0.370454008,pos,ns,0.431265703,-0.000182926,0.00011808,-1.549168831,0.122361399,neg,ns,0.827184999,Kmt2b,Kmt2b_Exon,7,30587266,30587315,30587266,30587267,50,-,CGGAGCGCAGAGCGCAGGGAACTGGGGGCCACATCTTCATCTGAATGAAA,"Exon (Kmt2b-201/Kmt2b, exon 2 of 37)",7,30568858,30588717,19860,2,Kmt2b-201,1402,Kmt2b-201;Kmt2b-202;Kmt2b-206;Kmt2b-203;Zbtb32-202;Zbtb32-201,Kmt2b;Kmt2b;Kmt2b;Kmt2b;Zbtb32;Zbtb32,0;0;0;-2192;5627;11554,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,7,75410,ENSMUSG00000006307,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7801,cg13530363,0.00000333,0.00000313,1.065520681,0.287469549,gain,ns,-0.00000355,0.00000531,-0.66959418,0.503614937,neg,ns,0.002463637,0.001555393,1.583931839,0.114228822,pos,ns,0.942224303,-0.0000737,0.0000535,-1.378236835,0.169124083,neg,ns,0.80551571,Vps11,Vps11_threeUTR,9,44356223,44356272,44356271,44356272,50,-,CTTGCCTCCAGTTTGGTCTGTGTGTCCTTCTCCTGCAGTGCGTGGACCCG,3' UTR,9,44347749,44361670,13922,2,Vps11-201,5398,Vps11-201;Vps11-205;Vps11-206;Vps11-202;Vps11-203;Vps11-204,Vps11;Vps11;Vps11;Vps11;Vps11;Vps11,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,2,71732,ENSMUSG00000032127,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13869,cg16821706,-0.00000178,0.00000107,-1.656312591,0.098670321,loss,ns,0.00000122,0.00000183,0.669593701,0.503615242,pos,ns,-0.000544129,0.000534726,-1.01758453,0.309668947,neg,ns,0.509102343,0.0000163,0.0000184,0.885093657,0.376792118,pos,ns,0.962031069,Ola1,Ola1_Intron,2,73140389,73140438,73140437,73140438,50,-,TCTCACAAAAAACATGGGGTGTCTGGCGACAGCTAAATCACAGACTGGCG,"Intron (Ola1-201/Ola1, intron 7 of 10)",2,73092801,73214447,121647,2,Ola1-201,74009,Ola1-201;Ola1-206;Ola1-203;Ola1-202,Ola1;Ola1;Ola1;Ola1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,19,67059,ENSMUSG00000027108,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27888,cg24953668,-0.0000121,0.00000476,-2.540266897,0.011564542,loss,ns,-0.00000541,0.00000808,-0.669572127,0.50362898,neg,ns,0.000519783,0.00236838,0.219467568,0.826430278,pos,ns,0.08279378,-0.0000895,0.0000814,-1.098294161,0.272928353,neg,ns,0.952126582,Prox1,Prox1_Exon,1,190147097,190147146,190147097,190147098,50,-,CGGAAATTGCTAAACCACTTGATGAGCTGAGAGGTAATGCATCTGTTGAA,"Exon (Prox1-202/Prox1, exon 4 of 5)",1,190118035,190170714,52680,2,Prox1-202,23568,Prox1-202;Prox1-201;Prox1-203,Prox1;Prox1;Prox1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,19,59,19130,ENSMUSG00000010175,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6282,cg18652212,-0.00005,0.00000853,-5.861413553,1.17E-08,loss,yes,-0.0000097,0.0000145,-0.669563384,0.503634547,neg,ns,-0.010351526,0.004244034,-2.439077223,0.01528556,neg,ns,1.815718646,0.000393162,0.000145952,2.693777322,0.007449433,pos,ns,0.6747958,Nrn1,Nrn1_Exon,13,36726766,36726815,36726814,36726815,50,+,TTCTTTTCTCAGTTTATCCCACATATCTTTCGCCCCTTCCTGGCAATCCG,"Exon (Nrn1-204/Nrn1, exon 3 of 3)",13,36725361,36730680,5320,2,Nrn1-204,3865,Fars2-210;Fars2-211;Nrn1-204;Nrn1-201;Nrn1-203;Nrn1-202;Nrn1-205,Fars2;Fars2;Nrn1;Nrn1;Nrn1;Nrn1;Nrn1,608886;4840;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,9,68404,ENSMUSG00000039114,conserved gene and region,13,36726529,36726830,302,*,302,22,0.586092715,0.856185567,0.072847682,4.83E-14,CpGisland,TRUE,U13,Hc-P
4929,cg09276076,0.00000013,0.00000269,0.048245152,0.961551933,gain,ns,-0.00000306,0.00000458,-0.669488053,0.503682519,neg,ns,0.000991464,0.001340333,0.739715007,0.460032733,pos,ns,0.337211265,-0.0000903,0.0000461,-1.958451174,0.051073545,neg,ns,0.933805969,Marchf6,Marchf6_threeUTR,15,31458854,31458903,31458854,31458855,50,+,CGAGATCACAGCAGGTCCAAAATAAAGTGACAACTAGATTTAATAAATTA,3' UTR,15,31455891,31531053,75163,2,Marchf6-201,72150,Gm49214-201;Marchf6-201,Gm49214;Marchf6,-3378;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,7,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4432,cg14172820,-0.00000778,0.0000104,-0.744727255,0.457000811,loss,ns,0.0000119,0.0000177,0.669425073,0.503722627,pos,ns,0.000994812,0.005196534,0.191437652,0.848308049,pos,ns,0.071446412,-0.000225126,0.000178708,-1.259738946,0.208711121,neg,ns,0.734372471,Gm20096,Gm20096_Intron,18,28894404,28894453,28894452,28894453,50,+,CTAATACTGTGTTAGCAAATTATTGATCCCAATGATGAGAACAGGAATCG,"Intron (Gm33948-201/Gm33948-201, intron 1 of 2)",18,28602648,28602989,342,2,Gm20096-201,-291415,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,3,100504163,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11376,cg05487364,-0.0000248,0.00000678,-3.656219814,0.000300588,loss,ns,0.00000771,0.0000115,0.669364098,0.50376146,pos,ns,-0.003837088,0.003375298,-1.136814626,0.256493768,neg,ns,0.590923182,0.0000124,0.000116076,0.106545046,0.915218832,pos,ns,0.894846431,Galnt5,Galnt5_Intergenic_upstream,2,57858829,57858878,57858877,57858878,50,+,AAGTATAAACTGTTATTGATCCCCTAAATGAAATTTGTTCATGCTGATCG,Distal Intergenic,2,57997884,58039878,41995,1,Galnt5-201,-139006,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,8,241391,ENSMUSG00000026828,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16004,cg17684622,-0.0000265,0.00000918,-2.884991617,0.004188588,loss,ns,-0.0000104,0.0000156,-0.669353675,0.503768098,neg,ns,-0.005808079,0.004569415,-1.271077027,0.204654183,neg,ns,0.688979374,-0.0000836,0.000157142,-0.531775005,0.595262701,neg,ns,0.809387378,Epha5,Epha5_Exon,5,84150323,84150372,84150371,84150372,50,-,AGTAATTAAAATGACTTACACACTGGGGTGGTTTCAAACTCAAATCTTCG,"Exon (Epha5-201/Epha5, exon 5 of 16)",5,84054761,84416921,362161,2,Epha5-201,266549,Epha5-201;Epha5-205;Epha5-206;Epha5-202;Epha5-203;Epha5-204;Epha5-209,Epha5;Epha5;Epha5;Epha5;Epha5;Epha5;Epha5,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,9,13839,ENSMUSG00000029245,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18427,cg18350524,-0.0000374,0.0000135,-2.769200485,0.005957952,loss,ns,0.0000153,0.0000229,0.669298953,0.503802949,pos,ns,0.00117168,0.00671763,0.174418585,0.861650362,pos,ns,0.064668925,-0.000451512,0.000231019,-1.954440203,0.05154789,neg,ns,0.518494256,Ube2n,Ube2n_fiveUTR,10,95515195,95515244,95515243,95515244,50,-,GGGTTCTGACAAGATGGCCGGGCTGCCCCGCAGGATCATCAAGGTAACCG,Promoter (<=1kb),10,95515145,95545657,30513,1,Ube2n-201,50,Ube2n-201;Ube2n-203;Ube2n-205;Ube2n-206,Ube2n;Ube2n;Ube2n;Ube2n,0;0;0;-410,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,1,93765,ENSMUSG00000074781,conserved gene but different region,10,95514482,95515951,1470,*,1470,171,0.697959184,0.959379878,0.116326531,1.59E-141,CpGisland,TRUE,U1,Pr-A
412,cg20315951,0.0000654,0.00000482,13.56314505,3.21E-33,gain,yes,-0.00000548,0.0000082,-0.669096217,0.503932082,neg,ns,0.004290413,0.002401392,1.786636338,0.074973369,pos,ns,1.125092976,0.000133819,0.0000826,1.620399637,0.106163187,pos,ns,0.119403058,Ovol1,Ovol1_Promoter,19,5560740,5560789,5560740,5560741,50,+,CGTTGGGAAATAACGGTGACAACCCACCTATTTGTTACCTGTCGAACCGG,Promoter (<=1kb),19,5549136,5560646,11511,2,Ovol1-201,-94,Ovol1-201;Ovol1-202,Ovol1;Ovol1,-94;-1337,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,2,2,18426,ENSMUSG00000024922,conserved gene and region,19,5560720,5561128,409,*,409,45,0.684596577,0.944863699,0.11002445,1.79E-36,CpGisland,TRUE,U3,Pr-B
4679,cg16425297,0.00000189,0.00000473,0.398498477,0.690537109,gain,ns,0.00000538,0.00000804,0.669073978,0.503946247,pos,ns,-0.000237825,0.002355182,-0.100979523,0.919631993,neg,ns,0.036385928,0.0000107,0.000081,0.132470474,0.894698117,pos,ns,0.931470028,Cacna1d,Cacna1d_threeUTR,14,30096982,30097031,30096982,30096983,50,-,CGAAGAGTTCACCACGTACCAGAACTTGTACTGGTAGGGGTTTTTGGGGA,3' UTR,14,30039941,30491453,451513,2,Cacna1d-202,394422,Cacna1d-202;Cacna1d-201;Cacna1d-208;Cacna1d-209;Cacna1d-214;Cacna1d-204;Cacna1d-207;Cacna1d-218;Cacna1d-216;Cacna1d-217;Cacna1d-210;Cacna1d-219,Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,13,26,12289,ENSMUSG00000015968,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4786,cg06946028,-0.00000395,0.00000612,-0.645421432,0.519131529,loss,ns,0.00000695,0.0000104,0.668920352,0.504044112,pos,ns,-0.005680033,0.00304404,-1.865952212,0.062992295,neg,ns,1.200712567,-0.0000468,0.000104684,-0.446992352,0.655192711,neg,ns,0.820206759,Prkg1,Prkg1_threeUTR,19,30569092,30569141,30569140,30569141,50,+,CCACTGTAGTTACTGGAGCAGCATCGATCAAAGGCATCATGGTGACCCCG,3' UTR,19,30564489,31765033,1200545,2,Prkg1-201,1195892,Prkg1-201;Prkg1-208;Prkg1-202;Prkg1-207;Prkg1-204,Prkg1;Prkg1;Prkg1;Prkg1;Prkg1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,13,19091,ENSMUSG00000052920,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25194,cg20919139,-0.00000848,0.00000885,-0.958300573,0.338657991,loss,ns,-0.0000101,0.000015,-0.668875588,0.50407263,neg,ns,0.010380908,0.004404189,2.357052934,0.019042147,pos,ns,1.720284078,-0.000221103,0.00015146,-1.459814676,0.145353635,neg,ns,0.453884398,Arid1a,Arid1a_threeUTR,4,133679390,133679439,133679390,133679391,50,+,CGCTTTGTGCAGGTCACCAACTTGTTAACTCGTCATACTATAAAGGGGTA,3' UTR,4,133679008,133753611,74604,2,Arid1a-202,74172,Arid1a-202;Arid1a-205;Arid1a-201,Arid1a;Arid1a;Arid1a,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,31,93760,ENSMUSG00000007880,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6063,cg11616824,-0.00000696,0.00000306,-2.276895288,0.023473687,loss,ns,-0.00000347,0.0000052,-0.668710586,0.504177756,neg,ns,0.003544778,0.001522146,2.328802301,0.020512129,pos,ns,1.68798926,-0.000119524,0.0000523,-2.283330937,0.023087315,neg,ns,0.925674897,Ppp1r10,Ppp1r10_Exon,17,35931172,35931221,35931172,35931173,50,+,CGACATTTCATGATGAAGGGCAACTGCCGCTATGAGAACAACTGTGCCTT,"Exon (Ppp1r10-202/Ppp1r10, exon 20 of 20)",17,35916566,35932283,15718,1,Ppp1r10-202,14606,Ppp1r10-202;Ppp1r10-201;Ppp1r10-205;Rbx1-ps-201,Ppp1r10;Ppp1r10;Ppp1r10;Rbx1-ps,0;0;4678;4729,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,4,52040,ENSMUSG00000039220,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4389,cg08856808,0.00000118,0.00000274,0.428735359,0.668413589,gain,ns,-0.00000312,0.00000466,-0.668702679,0.504182794,neg,ns,-0.003791762,0.001364846,-2.77816086,0.00580004,neg,ns,2.23656903,0.000057,0.0000469,1.214706422,0.225402513,pos,ns,0.905210993,Trappc12,Trappc12_Exon,12,28691451,28691500,28691499,28691500,50,-,TCGTGCAGGTAGTGCCTGGGGTCCTGCTGGACCATGGCCTCCAGCTGCCG,"Exon (Trappc12-202/Trappc12, exon 12 of 12)",12,28690628,28750472,59845,2,Trappc12-202,58972,Trappc12-202;Trappc12-201,Trappc12;Trappc12,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,217449,ENSMUSG00000020628,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6340,cg02359579,0.000034,0.00000602,5.653628932,3.57E-08,gain,yes,0.00000684,0.0000102,0.668539128,0.504287007,pos,ns,0.004784971,0.002996196,1.597015364,0.111281099,pos,ns,0.953578592,0.0000143,0.000103039,0.138970848,0.889563421,pos,ns,0.700075899,Pknox2,Pknox2_Intron,9,36938710,36938759,36938758,36938759,50,-,ACTCTGTACAAGGGCACTAAATTACCAGGAACTAATAATCCGCAGCATCG,"Intron (Pknox2-207/Pknox2, intron 3 of 10)",9,36890982,37083309,192328,2,Pknox2-207,144550,Pknox2-207;Pknox2-201;Pknox2-202;Pknox2-203;Pknox2-206;Pknox2-204;Pknox2-205;Pknox2-208;Pknox2-210;Pknox2-209,Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,47,208076,ENSMUSG00000035934,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12671,cg19904454,0.0000605,0.00000856,7.075452848,9.97E-12,gain,yes,-0.00000972,0.0000145,-0.668351242,0.504406741,neg,ns,0.016514258,0.004258839,3.877642997,0.0001288,pos,ns,3.890085724,-0.000412349,0.000146461,-2.815418176,0.005183306,neg,ns,0.104818136,Shisa6,Shisa6_Exon,11,66525409,66525458,66525457,66525458,50,+,TGTAGACGGTGAAGTTGGTCTTGTCCTTCTCCGGGTCGTACTTGTTCTCG,Promoter (<=1kb),11,66211725,66525795,314071,2,Shisa6-202,337,Shisa6-202;Shisa6-201,Shisa6;Shisa6,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,4,380702,ENSMUSG00000053930,conserved gene and region,11,66525155,66526797,1643,*,1643,221,0.734023128,1.010348263,0.134510043,7.10E-199,CpGisland,TRUE,U13,Hc-P
15344,cg12452557,-0.00000385,0.00000542,-0.710267807,0.478072043,loss,ns,0.00000616,0.00000921,0.668344036,0.504411333,pos,ns,0.010789326,0.002698442,3.998354504,0.0000798,pos,ns,4.098047474,-0.000294852,0.0000928,-3.177316367,0.001636279,neg,ns,0.571194178,Sos1,Sos1_Exon,17,80434090,80434139,80434138,80434139,50,-,ATCTTCTTGATTGCTAGTTGTTTCCCCTTCATTTGCTGACTATAAAACCG,"Exon (Sos1-201/Sos1, exon 10 of 22)",17,80393751,80479969,86219,2,Sos1-201,45830,Sos1-201;Sos1-202,Sos1;Sos1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,20662,ENSMUSG00000024241,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4285,cg02822542,0.0000013,0.000001,1.297652225,0.195371629,gain,ns,-0.00000114,0.0000017,-0.668297477,0.504441006,neg,ns,-0.00060567,0.000497986,-1.216238162,0.224819474,neg,ns,0.648166072,0.00000539,0.0000171,0.31500464,0.752970058,pos,ns,0.976539371,Dyrk1b,Dyrk1b_Exon,7,28185790,28185839,28185790,28185791,50,-,CGGGGGAGCCGGGCCACAGCCCCGCCGACTACCTCCGCTTCCAGGACCTG,"Exon (Dyrk1b-201/Dyrk1b, exon 9 of 11)",7,28179469,28187294,7826,1,Dyrk1b-201,6321,Dyrk1b-201;Dyrk1b-203;Dyrk1b-202,Dyrk1b;Dyrk1b;Dyrk1b,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,8,13549,ENSMUSG00000002409,conserved gene and region,7,28185735,28186008,274,*,274,29,0.748175183,0.761548783,0.105839416,3.86E-23,CpGisland,TRUE,U10,Tr-S
14955,cg07875786,0.000137486,0.00000954,14.41763323,2.04E-36,gain,yes,-0.0000108,0.0000162,-0.668181444,0.50451496,neg,ns,0.014964204,0.00474613,3.152927406,0.001774635,pos,ns,2.750890894,-0.000208465,0.000163219,-1.277209473,0.202484062,neg,ns,0.187561489,Nr2f1,Nr2f1_Exon,13,78200391,78200440,78200391,78200392,50,-,CGAAAGGGGGATCTGCGCGAATGTCTGTATATAGTGAACTTTGACACTAC,Promoter (<=1kb),13,78188973,78199757,10785,2,Nr2f1-201,-683,Nr2f1-201;Nr2f1-205;Nr2f1-203;Nr2f1-202;Nr2f1-206,Nr2f1;Nr2f1;Nr2f1;Nr2f1;Nr2f1,0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,25,55,13865,ENSMUSG00000069171,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26244,cg11978356,0.000105245,0.0000187,5.62466338,4.15E-08,gain,yes,-0.0000212,0.0000318,-0.667909701,0.504688179,neg,ns,0.035610346,0.009312805,3.823804508,0.000158858,pos,ns,3.798991246,-0.001076124,0.000320267,-3.360088282,0.000876581,neg,ns,0.245091698,Vps13d,Vps13d_Intron,4,145034820,145034869,145034868,145034869,50,-,ATGACCCCAGCTGCAGAGTCACTGGCGGGTTCATCGGGAGGGCAGGCACG,"Intron (Vps13d-202/Vps13d, intron 65 of 69)",4,144972622,145195005,222384,2,Vps13d-202,160136,Vps13d-202;Vps13d-203;Vps13d-201;Vps13d-210;Vps13d-205;Vps13d-207,Vps13d;Vps13d;Vps13d;Vps13d;Vps13d;Vps13d,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,10,230895,ENSMUSG00000020220,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U5,En-Sd
21293,cg09017667,-0.0000439,0.0000094,-4.668514327,0.00000452,loss,ns,-0.0000107,0.000016,-0.667861885,0.504718663,neg,ns,-0.01644075,0.004676516,-3.515598126,0.000504234,neg,ns,3.297367766,0.000175487,0.000160825,1.091164798,0.276047733,pos,ns,0.814999708,Tceanc2,Tceanc2_threeUTR,4,107139744,107139793,107139744,107139745,50,+,CGGGAGCAGAGATGAAACGTTTCCCGTTCAATATTTTCAACCAGTAGGTG,3' UTR,4,107134155,107178547,44393,2,Tceanc2-202,38754,Tceanc2-202;Tceanc2-204;Tceanc2-205;Tceanc2-201;Tceanc2-203;Tceanc2-208,Tceanc2;Tceanc2;Tceanc2;Tceanc2;Tceanc2;Tceanc2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,2,66526,ENSMUSG00000028619,conserved gene but different region,4,107139543,107139769,227,*,227,21,0.607929515,1.001470588,0.092511013,1.37E-15,CpGisland,TRUE,NA,NRS
24146,cg18701030,-0.0000294,0.0000125,-2.358088283,0.018990079,loss,ns,0.0000141,0.0000212,0.667850335,0.504726026,pos,ns,-0.001388765,0.006206399,-0.223763408,0.823088795,neg,ns,0.08455331,0.0000629,0.000213438,0.294876737,0.768285422,pos,ns,0.309058346,Kdm2b,Kdm2b_fiveUTR,5,122989025,122989074,122989025,122989026,50,-,CGAGATCTACAAAGTTTTGCACCAACACTTAGGCAGATCCGTTTGCAAAG,Promoter (<=1kb),5,122870665,122989099,118435,2,Kdm2b-202,25,Kdm2b-202;Kdm2b-204;Kdm2b-203;Kdm2b-207;Kdm2b-205;Kdm2b-206;Kdm2b-218;Kdm2b-210;Kdm2b-216,Kdm2b;Kdm2b;Kdm2b;Kdm2b;Kdm2b;Kdm2b;Kdm2b;Kdm2b;Kdm2b,0;0;0;0;0;0;-489;0;-4054,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,6,30841,ENSMUSG00000029475,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
2836,cg04785091,-0.0000251,0.00000756,-3.318433814,0.001013062,loss,ns,0.00000858,0.0000128,0.667849893,0.504726307,pos,ns,-0.001007962,0.00376179,-0.267947473,0.78891795,neg,ns,0.102968163,0.0000316,0.000129368,0.244540794,0.806973791,pos,ns,0.87596089,Ccdc178,Ccdc178_Intron,18,21940357,21940406,21940357,21940358,50,-,CGTATTCAAACTATTGGGCATGTAACTGAATATCTCAACTGTACCTGAAG,"Intron (Ccdc178-204/Ccdc178, intron 21 of 23)",18,21810893,22171442,360550,2,Ccdc178-204,231036,Ccdc178-204;Ccdc178-201;Ccdc178-202,Ccdc178;Ccdc178;Ccdc178,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,19,21,70950,ENSMUSG00000024306,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25693,cg11511443,0.0000327,0.0000133,2.467615626,0.01414149,gain,ns,0.000015,0.0000225,0.667786818,0.50476652,pos,ns,0.002881364,0.00659941,0.436609337,0.662698629,pos,ns,0.178683928,-0.000134905,0.000226953,-0.594420009,0.552664793,neg,ns,0.774095948,Lmo3,Lmo3_Intron,6,138425030,138425079,138425078,138425079,50,+,TGTTTAAATCATTCAACTAATTAAATGATGGGATTATTCCTCTGCCTACG,"Intron (A830011K09Rik-201/A830011K09Rik-201, intron 1 of 3)",6,138362918,138581968,219051,2,Lmo3-204,156889,Lmo3-204;Lmo3-207;Lmo3-201;Lmo3-206;Lmo3-202;Lmo3-208;Lmo3-203;Lmo3-205,Lmo3;Lmo3;Lmo3;Lmo3;Lmo3;Lmo3;Lmo3;Lmo3,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,38,109593,ENSMUSG00000030226,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23364,cg12891498,0.00000155,0.00000225,0.689725638,0.490882722,gain,ns,0.00000256,0.00000383,0.667771569,0.504776242,pos,ns,0.000508529,0.001121362,0.453492238,0.650511613,pos,ns,0.186744946,-0.0000101,0.0000386,-0.260743752,0.794463245,neg,ns,0.073275945,Hrk,Hrk_Intron,5,118169685,118169734,118169733,118169734,50,-,TCCACCATGTGACACTTTAATTAATAATAGCGCCGTCAGCACAACAAACG,"Intron (Hrk-202/Hrk, intron 1 of 1)",5,118164648,118184828,20181,1,Hrk-202,5037,Hrk-202;Hrk-201,Hrk;Hrk,0;-14,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,4,12123,ENSMUSG00000046607,conserved gene but different region,5,118169406,118170263,858,*,858,109,0.713286713,1.003508772,0.127039627,2.97E-95,CpGisland,TRUE,U3,Pr-B
26540,cg23778391,-0.00000677,0.00000195,-3.477092807,0.000579309,loss,ns,0.00000221,0.00000331,0.667753919,0.504787495,pos,ns,-0.001563551,0.000969139,-1.613339802,0.107688158,neg,ns,0.967832051,-0.00000609,0.0000333,-0.1827583,0.855107131,neg,ns,0.953860902,Casz1,Casz1_Intron,4,148897401,148897450,148897401,148897402,50,+,CGGGACCCCTGGCATCGGTATTTATGGGAAAAAAATGGGAAATGTGCTGT,"Intron (Casz1-201/Casz1, intron 3 of 15)",4,148804429,148945129,140701,1,Casz1-201,92972,Casz1-201;Casz1-202;Casz1-206,Casz1;Casz1;Casz1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,94,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26154,cg06491768,-0.0000137,0.00000914,-1.499611835,0.134732673,loss,ns,0.0000104,0.0000155,0.667644873,0.504857021,pos,ns,0.001916354,0.004547311,0.421425736,0.673736287,pos,ns,0.171510061,0.000133214,0.000156382,0.851850804,0.394954488,pos,ns,0.747958204,Lmo4,Lmo4_Exon,3,144198195,144198244,144198243,144198244,50,+,TAATTCTGTTATGACAAATCAAGATAAACGTTCCCCCTAAATTGCATGCG,"Exon (Gm43445-201/Gm43445-201, exon 1 of 1)",3,144188530,144202396,13867,2,Lmo4-203,4152,Lmo4-203;Lmo4-201;Lmo4-202;Lmo4-207;Lmo4-206;Lmo4-208;Lmo4-205;Lmo4-204,Lmo4;Lmo4;Lmo4;Lmo4;Lmo4;Lmo4;Lmo4;Lmo4,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,18,54,16911,ENSMUSG00000028266,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23528,cg10566913,-0.00000893,0.00000477,-1.871341364,0.062239504,loss,ns,-0.00000541,0.00000811,-0.66761251,0.504877656,neg,ns,-0.008206173,0.002374571,-3.455854958,0.000625069,neg,ns,3.204071695,0.00015368,0.0000817,1.881924227,0.06078298,pos,ns,0.898331814,Gm28467,Gm28467_Intergenic_upstream,1,118795714,118795763,118795762,118795763,50,+,TCAATCACTTTATAGAAGTTGATCTGTCCTTTTTATTACAATTACTGTCG,Distal Intergenic,1,118810136,118810453,318,1,Gm28467-201,-14373,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13411,cg02530320,-0.00000284,0.00000346,-0.820605,0.412501855,loss,ns,0.00000393,0.00000588,0.667545965,0.504920088,pos,ns,0.001956248,0.001724037,1.134690178,0.257381762,pos,ns,0.589422231,-0.0000451,0.0000593,-0.760927295,0.4472789,neg,ns,0.901241821,Nr2f2,Nr2f2_Intron,7,70377543,70377592,70377591,70377592,50,+,AGATGAATTACCGATGAATGCTCACTTATCAACCCTATCACTATCGTTCG,"Intron (B130024G19Rik-202/B130024G19Rik-202, intron 1 of 10)",7,70354439,70366735,12297,2,Nr2f2-202,-10808,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,69,11819,ENSMUSG00000030551,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13237,cg18160762,-0.0000133,0.00000632,-2.104309703,0.036156386,loss,ns,-0.00000717,0.0000107,-0.667539579,0.50492416,neg,ns,-0.002602079,0.003148013,-0.82657825,0.409111892,neg,ns,0.388157897,-0.0000528,0.00010826,-0.487519168,0.626235043,neg,ns,0.794211403,Nlgn2,Nlgn2_Exon,11,69830595,69830644,69830595,69830596,50,-,CGTTTTTTTGTGAGCGGACCTAAGACCGGGAACACAAAACAGAGAAAAAA,"Exon (Nlgn2-201/Nlgn2, exon 2 of 7)",11,69823122,69834849,11728,2,Nlgn2-201,4205,Nlgn2-201;Nlgn2-202;Nlgn2-203;Nlgn2-204,Nlgn2;Nlgn2;Nlgn2;Nlgn2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,17,216856,ENSMUSG00000051790,conserved gene and region,11,69830545,69830622,78,*,78,8,0.512820513,1.575757576,0.102564103,0.00000181,CpGisland,TRUE,U11,Tr-P
8095,cg16482260,0.0000959,0.0000135,7.092971951,8.94E-12,gain,yes,-0.0000153,0.000023,-0.667527816,0.50493166,neg,ns,0.027093049,0.006731148,4.025026573,0.0000717,pos,ns,4.14468922,-0.000630353,0.000231484,-2.723101613,0.006833585,neg,ns,0.454422319,Ebf1,Ebf1_Intron,11,44741152,44741201,44741200,44741201,50,-,CCTATTGATTTTTTAGGTTTCTGCCGTCATCGGTTTCCAGCCTCACAGCG,"Intron (Ebf1-203/Ebf1, intron 6 of 15)",11,44617317,45004995,387679,1,Ebf1-203,123835,Ebf1-203;Ebf1-202;Ebf1-201,Ebf1;Ebf1;Ebf1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,80,13591,ENSMUSG00000057098,conserved gene and region,11,44741176,44741251,76,*,76,9,0.723684211,0.904761905,0.118421053,8.12E-08,CpGisland,TRUE,NA,NRS
27144,cg21353753,-0.000052,0.0000119,-4.359766956,0.0000177,loss,ns,0.0000135,0.0000203,0.667471731,0.504967424,pos,ns,-0.006600667,0.005937915,-1.111613518,0.26716572,neg,ns,0.573219266,0.000224585,0.000204204,1.099804345,0.272270709,pos,ns,0.796952187,Rps6ka3,Rps6ka3_fiveUTR,X,159303254,159303303,159303254,159303255,50,-,CGCCTGACAGGAAATTTTCTAATTGCCGGAACAGCTGGTAGGAGAAAACT,Promoter (<=1kb),20,159303281,159330877,27597,1,Rps6ka3-202,0,Rps6ka3-204;Rps6ka3-205;Rps6ka3-201;Rps6ka3-203;Rps6ka3-207;Rps6ka3-209;Rps6ka3-202,Rps6ka3;Rps6ka3;Rps6ka3;Rps6ka3;Rps6ka3;Rps6ka3;Rps6ka3,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,6,110651,ENSMUSG00000031309,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
15837,cg12099383,-0.0000107,0.00000362,-2.944954641,0.003474441,loss,ns,0.00000411,0.00000615,0.667341687,0.505050355,pos,ns,-0.000187919,0.00180229,-0.104266906,0.917024965,neg,ns,0.037618841,-0.00000528,0.000062,-0.085194825,0.932161499,neg,ns,0.948903441,Scube1,Scube1_Exon,15,83651678,83651727,83651678,83651679,50,+,CGCTTGTCCACATCAGCTACTGACGTGGCATTGAACTGAGAGCGCTCAAT,"Exon (Scube1-201/Scube1, exon 7 of 23)",15,83604999,83725021,120023,2,Scube1-204,73294,Scube1-204;Scube1-202;Scube1-201;Scube1-203;Scube1-205;Scube1-206,Scube1;Scube1;Scube1;Scube1;Scube1;Scube1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,8,64706,ENSMUSG00000016763,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4549,cg24897861,-0.0000759,0.00000956,-7.938718175,3.78E-14,loss,yes,-0.0000108,0.0000162,-0.667282102,0.505088355,neg,ns,-0.01793615,0.004760524,-3.767683627,0.000197184,neg,ns,3.705128612,0.0000797,0.000163714,0.486531444,0.626934198,pos,ns,0.76265113,Ntm,Ntm_Intron,9,29666752,29666801,29666752,29666753,50,-,CGTGGAAAGATTATTCTGACTAACGAGGTTCTGGGCCACTAATTCATTAC,"Intron (Ntm-201/Ntm, intron 1 of 7)",9,28994750,29963129,968380,2,Ntm-201,296328,Ntm-201;Ntm-204;Ntm-210;Ntm-207,Ntm;Ntm;Ntm;Ntm,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,27,32,235106,ENSMUSG00000059974,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20419,cg05273821,0.0000478,0.00000539,8.86654588,6.07E-17,gain,yes,-0.00000611,0.00000915,-0.667252593,0.505107175,neg,ns,0.007476006,0.002681083,2.788428002,0.005623767,pos,ns,2.24997271,-0.000142456,0.0000922,-1.545042333,0.123356228,neg,ns,0.116481551,Hoxc4,Hoxc4_Exon,15,103034837,103034886,103034837,103034838,50,-,CGGACCAGGGAATCGGGATTCCAGCATCACCACCAGGAGCTGTACCCACC,"Exon (Hoxc4-202/Hoxc4, exon 2 of 4)",15,103018934,103036405,17472,1,Hoxc4-202,15903,Hoxc4-202;Hoxc4-201,Hoxc4;Hoxc4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,91,15423,ENSMUSG00000075394,conserved gene and region,15,103034736,103035107,372,*,372,27,0.626344086,0.794494542,0.072580645,4.60E-17,CpGisland,TRUE,NA,NRS
8958,cg04489412,-0.000000371,0.000000687,-0.540622568,0.589155977,loss,ns,0.000000779,0.00000117,0.667224562,0.505125052,pos,ns,-0.000422165,0.000341878,-1.234841545,0.217824614,neg,ns,0.661893048,-4.25E-08,0.0000118,-0.00361577,0.997117365,neg,ns,0.985128721,Kcnc1,Kcnc1_Exon,7,46435182,46435231,46435182,46435183,50,-,CGAAGGCCGCGCTGGCGAACGAAGACTGCCCCCACATAGACCAGGCCCTC,"Exon (Kcnc1-203/Kcnc1, exon 3 of 4)",7,46397648,46438704,41057,1,Kcnc1-203,37534,Kcnc1-201;Kcnc1-203,Kcnc1;Kcnc1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,14,16502,ENSMUSG00000058975,conserved gene but different region,7,46435182,46435318,137,*,137,14,0.656934307,0.970647773,0.102189781,3.95E-11,CpGisland,TRUE,U15,NS
27907,cg17769310,0.0000212,0.00000312,6.812093487,5.01E-11,gain,yes,-0.00000353,0.0000053,-0.667205879,0.505136968,neg,ns,-0.001440341,0.00155166,-0.928258258,0.353995805,neg,ns,0.451001884,0.0000147,0.0000534,0.275594382,0.783043238,pos,ns,0.950988701,Prox1,Prox1_Exon,1,190161780,190161829,190161780,190161781,50,+,CGATCCATATCAAACTGGCTCATAGTAGGCCTGCCAAAAGGGGAAAGACA,"Exon (Prox1-202/Prox1, exon 2 of 5)",1,190118035,190170714,52680,2,Prox1-202,8885,Prox1-202;Prox1-201;Prox1-203,Prox1;Prox1;Prox1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,19,59,19130,ENSMUSG00000010175,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19832,cg24245801,0.0000713,0.0000142,5.018654718,0.000000879,gain,yes,0.0000161,0.0000241,0.667197154,0.505142533,pos,ns,0.004016709,0.007071482,0.568015136,0.570435866,pos,ns,0.243793176,-0.001325291,0.000243188,-5.449661592,0.000000103,neg,yes,0.328641145,Med12,Med12_Exon,X,101285679,101285728,101285679,101285680,50,+,CGCTCCTCCTGCGACCGCCACCTGCTGGCTGCCTCCCAGAACCGCATCGT,"Exon (Med12-204/Med12, exon 26 of 46)",20,101274030,101297465,23436,1,Med12-204,11649,Med12-204;Med12-203;Med12-201;Med12-202;Med12-209;Med12-207;Med12-208,Med12;Med12;Med12;Med12;Med12;Med12;Med12,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,15,15,59024,ENSMUSG00000079487,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
793,cg11601333,-0.000000512,0.00000104,-0.492697086,0.622575419,loss,ns,-0.00000118,0.00000176,-0.66717641,0.505155764,neg,ns,0.001575043,0.000516955,3.046768707,0.002512011,pos,ns,2.599978494,-0.0000377,0.0000178,-2.120495646,0.034758139,neg,ns,0.968128337,Pum2,Pum2_threeUTR,12,8743823,8743872,8743823,8743824,50,-,CGAAGTGCTTCAAGCACTTCCAGTCTATTTAGCTCCAGCAGCCAGCTCTT,3' UTR,12,8674134,8751454,77321,1,Pum2-203,69689,Pum2-203;Pum2-216;Pum2-201;Pum2-202;Pum2-207;Pum2-204;Pum2-210;Pum2-209;Pum2-206;Pum2-215,Pum2;Pum2;Pum2;Pum2;Pum2;Pum2;Pum2;Pum2;Pum2;Pum2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,7,11,80913,ENSMUSG00000020594,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13794,cg19691194,-0.00000483,0.00000925,-0.521908965,0.602106419,loss,ns,0.0000105,0.0000157,0.667011186,0.505261151,pos,ns,0.009168369,0.004606253,1.990418226,0.04742277,pos,ns,1.324013079,-0.000307576,0.000158409,-1.941662675,0.053083754,neg,ns,0.828097583,Ak3l2-ps,Ak3l2-ps_Intron,2,72766539,72766588,72766539,72766540,50,+,CGGAAATGTTTACAGCAATCTCTGATGGCAGTTCTACTAATGCAATGATT,"Intron (6430710C18Rik-203/6430710C18Rik-203, intron 4 of 5)",2,72633936,72634607,672,1,Ak3l2-ps-201,132603,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,635960,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15030,cg14629876,-0.0000835,0.0000145,-5.747723848,2.16E-08,loss,yes,-0.0000165,0.0000247,-0.666999027,0.505268907,neg,ns,-0.009786619,0.00723231,-1.353180262,0.176984002,neg,ns,0.75206599,-0.000176318,0.000248719,-0.708905951,0.478915612,neg,ns,0.6996098,Nlk,Nlk_threeUTR,11,78567200,78567249,78567248,78567249,50,-,CACTGTACTTCAAATCTACATTGTACAAAGTGACCAGAAAGTGTGCCACG,3' UTR,11,78567168,78697373,130206,2,Nlk-201,130124,Nlk-201;Nlk-203;Nlk-204,Nlk;Nlk;Nlk,0;1667;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,6,18099,ENSMUSG00000017376,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
12478,cg11147619,-0.00000375,0.00000361,-1.039162369,0.299539048,loss,ns,-0.00000409,0.00000613,-0.666956162,0.50529625,neg,ns,0.00273263,0.001794869,1.522467715,0.128911322,pos,ns,0.889708939,-0.000210846,0.0000617,-3.415873755,0.000720518,neg,ns,0.935432556,Gm13576,Gm13576_Intergenic_downstream,2,64523429,64523478,64523477,64523478,50,+,GAACTTAGCATTTAAATGACTTTCATCTTGACAATGACTGACATGTCTCG,Distal Intergenic,2,64569863,64570640,778,2,Gm13576-201,47162,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,4,620544,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16513,cg02922042,0.000139909,0.0000227,6.173381039,2.09E-09,gain,yes,0.0000257,0.0000385,0.666937013,0.505308465,pos,ns,0.046996058,0.011279741,4.166412724,0.0000402,pos,ns,4.396086532,-0.001398766,0.000387909,-3.60590871,0.000362381,neg,ns,0.463810104,Camkmt,Camkmt_Intron,17,85295007,85295056,85295055,85295056,50,-,CATTTACACGGCTTCAGAATGGTAATTATCAAACTTTTTGTCATGAAGCG,"Intron (Camkmt-201/Camkmt, intron 3 of 10)",17,85090552,85458588,368037,1,Camkmt-201,204455,Camkmt-201,Camkmt,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,41,44,73582,ENSMUSG00000071037,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11424,cg12357979,-0.00000541,0.00000406,-1.334681138,0.182960161,loss,ns,0.0000046,0.00000689,0.666932325,0.505311456,pos,ns,0.004878412,0.002018852,2.416428932,0.016251015,pos,ns,1.789119515,-0.000206641,0.0000694,-2.976331043,0.003146874,neg,ns,0.943378716,Fbn2,Fbn2_Exon,18,58071900,58071949,58071900,58071901,50,+,CGTTCACATTCGTCAATGTCTGAAAGGTAAAAACGTGAGATCCATTAAAG,"Exon (Fbn2-201/Fbn2, exon 27 of 65)",18,58008623,58210487,201865,2,Fbn2-201,138538,Fbn2-201,Fbn2,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,3,14119,ENSMUSG00000024598,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15777,cg23851890,-0.00000634,0.00000341,-1.857921503,0.064128095,loss,ns,-0.00000387,0.0000058,-0.666884446,0.505341999,neg,ns,0.003770336,0.001699443,2.218571839,0.02724,pos,ns,1.564792895,-0.00011193,0.0000584,-1.91517484,0.056390184,neg,ns,0.944521272,Ap2b1,Ap2b1_Exon,11,83364784,83364833,83364832,83364833,50,-,CTCTCTTTCAGCTTGGCAGTGACCTTGGCGGGGGCATTGGAGGAAGTCCG,"Exon (Ap2b1-201/Ap2b1, exon 15 of 22)",11,83302483,83405035,102553,1,Ap2b1-201,62301,Ap2b1-201;Ap2b1-205;Ap2b1-202;Ap2b1-206,Ap2b1;Ap2b1;Ap2b1;Ap2b1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,71770,ENSMUSG00000035152,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18531,cg08681375,0.000112788,0.0000121,9.358689624,1.69E-18,gain,yes,-0.0000137,0.0000205,-0.666836985,0.505372277,neg,ns,0.014078037,0.005998275,2.347014482,0.019553528,pos,ns,1.708774872,-0.000217943,0.00020628,-1.056540685,0.291543919,neg,ns,0.394446374,Hoxb9,Hoxb9_threeUTR,11,96274767,96274816,96274815,96274816,50,+,CTCCTCAATCTGAGTGAGAGACAAGTCAAAATCTGGTTTCAGAACCGGCG,3' UTR,11,96271457,96276595,5139,1,Hoxb9-201,3310,Hoxb9-201;Hoxb9-202,Hoxb9;Hoxb9,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,22,15417,ENSMUSG00000020875,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
26502,cg13779125,-0.0000116,0.00000218,-5.305049819,0.000000215,loss,yes,0.00000247,0.00000371,0.666697648,0.505461171,pos,ns,-0.00136685,0.001085638,-1.259028998,0.208967086,neg,ns,0.679922114,0.0000188,0.0000373,0.504780354,0.614071747,pos,ns,0.964257708,Adgrl2,Adgrl2_Exon,3,148827529,148827578,148827577,148827578,50,-,GTTCTACCTTACCCAGGTAAGTCCGTATTATAGTAGCCATCACAAACACG,Promoter (<=1kb),3,148815583,148828548,12966,2,Adgrl2-210,970,Adgrl2-210;Adgrl2-202;Adgrl2-218;Adgrl2-203;Adgrl2-208;Adgrl2-205;Adgrl2-217;Adgrl2-220;Adgrl2-215;Adgrl2-204;Adgrl2-212;Adgrl2-213;Adgrl2-214;Adgrl2-206;Adgrl2-209;Adgrl2-219;Adgrl2-216;Adgrl2-207,Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,10,99633,ENSMUSG00000028184,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3598,cg26525059,-0.0000556,0.0000057,-9.761906422,8.36E-20,loss,yes,0.00000645,0.00000968,0.66663604,0.505500479,pos,ns,-0.008109364,0.002835316,-2.860126678,0.004522146,neg,ns,2.344655415,0.000129054,0.0000975,1.323545437,0.186629302,pos,ns,0.924296636,Klhl32,Klhl32_Intron,4,24669645,24669694,24669645,24669646,50,+,CGCCCATTAAACATCCGTCTGATGCCCAAATTAACCTTCTTGGCAAACTG,"Intron (Klhl32-203/Klhl32, intron 5 of 7)",4,24612554,24800890,188337,2,Klhl32-203,131196,Klhl32-203;Klhl32-204;Klhl32-207;Klhl32-205;Klhl32-201;Klhl32-202;Klhl32-206,Klhl32;Klhl32;Klhl32;Klhl32;Klhl32;Klhl32;Klhl32,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,10,212390,ENSMUSG00000040387,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12796,cg01026140,-0.0000013,0.00000241,-0.54066305,0.589128102,loss,ns,0.00000273,0.00000409,0.666564076,0.505546395,pos,ns,0.000211595,0.001198819,0.176503258,0.860013842,pos,ns,0.065494559,0.0000759,0.0000412,1.84028873,0.066681614,pos,ns,0.959730923,Tmem33,Tmem33_Intergenic_upstream,5,67205744,67205793,67205744,67205745,50,-,CGGATGTTTGTGTATATGGAATAGATGGTGACTGCGGGGCTATAAAAATA,Distal Intergenic,5,67260565,67291461,30897,1,Tmem33-201,-54821,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,22,22,67878,ENSMUSG00000037720,mapped to different genes,5,67205742,67206001,260,*,260,15,0.457692308,1.114922813,0.057692308,2.43E-08,CpGisland,TRUE,U11,Tr-P
3966,cg07075226,-0.00000512,0.00000294,-1.739351256,0.082965595,loss,ns,-0.00000333,0.000005,-0.66639058,0.505657104,neg,ns,0.003014204,0.00146559,2.056648681,0.040556656,pos,ns,1.391937864,-0.000125368,0.0000504,-2.487391266,0.013393894,neg,ns,0.966075922,Gm7847,Gm7847_Intergenic_upstream,18,25999420,25999469,25999468,25999469,50,+,AAAATGGGTTTGACTACCAATTTTCCATTACAGCTGTTTTGTAATTACCG,Distal Intergenic,18,25823581,25824357,777,2,Gm7847-201,-175063,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,22,665916,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8635,cg14482397,0.0000616,0.0000145,4.236741349,0.0000299,gain,ns,-0.0000165,0.0000247,-0.666349201,0.50568351,neg,ns,0.016596313,0.007236589,2.293389018,0.022494579,pos,ns,1.647922131,-0.000159287,0.000248866,-0.64005151,0.522611874,neg,ns,0.470681577,Btrc,Btrc_Intron,19,45476094,45476143,45476094,45476095,50,+,CGCCTCGTTTTGGCTCTGTACTTAATGCACAAACAGTGCGATCTGCGGGG,"Intron (Btrc-204/Btrc, intron 1 of 2)",19,45363734,45507736,144003,1,Btrc-204,112360,Btrc-204;Btrc-201;Btrc-210;Btrc-202;Btrc-203;Btrc-209,Btrc;Btrc;Btrc;Btrc;Btrc;Btrc,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,63,98,12234,ENSMUSG00000025217,conserved gene and region,19,45476012,45476140,129,*,129,10,0.527131783,1.151785714,0.07751938,0.000000711,CpGisland,TRUE,NA,NRS
10959,cg20108671,-0.00000319,0.00000265,-1.201192123,0.23059362,loss,ns,-0.000003,0.00000451,-0.66634072,0.505688922,neg,ns,-0.0000317,0.001320224,-0.024045123,0.980832087,neg,ns,0.008405335,0.000034,0.0000454,0.748675307,0.454620586,pos,ns,0.908979555,Scaper,Scaper_Exon,9,55915995,55916044,55916043,55916044,50,+,TCTTTGCTTTCTAGTGGAACACTCCAAGCTATTAGGTTTCTTGCTGTACG,"Exon (Scaper-202/Scaper, exon 4 of 33)",9,55549879,55938101,388223,2,Scaper-202,22057,Scaper-202;Scaper-201;Scaper-204;Scaper-205,Scaper;Scaper;Scaper;Scaper,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,3,244891,ENSMUSG00000034007,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17428,cg15915056,0.00000269,0.00000321,0.838073218,0.402635282,gain,ns,0.00000364,0.00000546,0.666308785,0.505709302,pos,ns,0.000693353,0.001598633,0.433716112,0.664796272,pos,ns,0.177311425,-0.0000271,0.000055,-0.493324363,0.622132708,neg,ns,0.911611605,Ankrd17,Ankrd17_Exon,5,90243885,90243934,90243885,90243886,50,-,CGTTGAAGCTGATGAACTGGTTGTAGTTGTTGGGCTTGAAGTTAAAGAAC,"Exon (Ankrd17-201/Ankrd17, exon 29 of 34)",5,90227166,90366577,139412,2,Ankrd17-201,122643,Ankrd17-201;Ankrd17-203;Ankrd17-202;Ankrd17-205;Ankrd17-207,Ankrd17;Ankrd17;Ankrd17;Ankrd17;Ankrd17,0;0;0;0;-4197,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,11,12,81702,ENSMUSG00000055204,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13919,cg00181100,0.0000157,0.00000241,6.509179338,3.04E-10,gain,yes,-0.00000273,0.0000041,-0.666232531,0.505757967,neg,ns,0.002480045,0.001199736,2.067158582,0.039548981,pos,ns,1.402864701,-0.0000599,0.0000413,-1.452424467,0.147395002,neg,ns,0.040808911,Rgma,Rgma_Exon,7,73392082,73392131,73392130,73392131,50,+,CTGTTTCCAATGAATCCCCCATAGTTTTTCACAATGTTTTTGGCAGATCG,"Exon (Rgma-205/Rgma, exon 1 of 1)",7,73375509,73419899,44391,1,Rgma-202,16573,Rgma-202;Rgma-201;Rgma-203;Rgma-204;Rgma-205,Rgma;Rgma;Rgma;Rgma;Rgma,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,244058,ENSMUSG00000070509,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
138,cg17410301,-0.00000427,0.00000525,-0.814446596,0.416014355,loss,ns,-0.00000594,0.00000891,-0.666142648,0.505815333,neg,ns,-0.00540779,0.002610503,-2.071550658,0.039134245,neg,ns,1.407443038,0.000113081,0.0000898,1.259602924,0.208760145,pos,ns,0.86819801,Kdm2a,Kdm2a_Exon,19,4324856,4324905,4324904,4324905,50,+,TGGTGGTCGCTGGGGCCAGCCCCAGGGGATGACCGAGTCACCATACCCCG,Promoter (<=1kb),19,4317706,4324865,7160,2,Kdm2a-213,0,Kdm2a-201;Kdm2a-202;Kdm2a-213;Kdm2a-211;Kdm2a-207;Kdm2a-214;Kdm2a-212;Kdm2a-210,Kdm2a;Kdm2a;Kdm2a;Kdm2a;Kdm2a;Kdm2a;Kdm2a;Kdm2a,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,21,30,225876,ENSMUSG00000054611,conserved gene and region,19,4324711,4324995,285,*,285,19,0.621052632,0.696373457,0.066666667,1.66E-11,CpGisland,TRUE,U10,Tr-S
612,cg07356774,-0.00000399,0.00000139,-2.883853939,0.004203346,loss,ns,0.00000157,0.00000235,0.66609447,0.505846084,pos,ns,0.001829081,0.000689458,2.652925642,0.008390756,pos,ns,2.076198907,-0.0000532,0.0000237,-2.243050255,0.02559978,neg,ns,0.06332286,Rcor2,Rcor2_fiveUTR,19,7268239,7268288,7268287,7268288,50,+,CTGAGGCCGCAGCCGGCACTACTTCCCTGCCAGCAGCTTCATTGTGTGCG,Promoter (<=1kb),19,7268279,7275225,6947,1,Rcor2-201,0,Rcor2-204;Rcor2-201;Rcor2-202;Rcor2-203,Rcor2;Rcor2;Rcor2;Rcor2,0;0;0;-2664,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,3,104383,ENSMUSG00000024968,conserved gene and region,19,7268106,7269070,965,*,965,115,0.744041451,0.861393132,0.119170985,8.73E-97,CpGisland,TRUE,U2,Pr-W
35,cg00985561,0.0000155,0.00000233,6.632521577,1.47E-10,gain,yes,-0.00000264,0.00000397,-0.666057824,0.505869474,neg,ns,0.002084085,0.001161661,1.794055436,0.073778685,pos,ns,1.132069088,-0.0000362,0.0000399,-0.904974266,0.366181797,neg,ns,0.066096882,Bambi,Bambi_Exon,18,3508212,3508261,3508260,3508261,50,-,GGATCGCCACTCCAGCTACATCTTCATCTGGCTGCAGCTGGAGCTCTGCG,Promoter (<=1kb),18,3507923,3516404,8482,1,Bambi-201,289,Bambi-201,Bambi,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,68010,ENSMUSG00000024232,conserved gene and region,18,3508260,3508448,189,*,189,16,0.687830688,0.750558451,0.084656085,2.34E-11,CpGisland,TRUE,U1,Pr-A
8519,cg09742539,0.0000373,0.0000048,7.763680449,1.21E-13,gain,yes,0.00000543,0.00000816,0.666050014,0.505874459,pos,ns,0.003942634,0.002389445,1.650020926,0.09995146,pos,ns,1.000210856,-0.000055,0.0000822,-0.668911479,0.504049764,neg,ns,0.156913016,Lbx1,Lbx1_Intergenic_upstream,19,45293627,45293676,45293627,45293628,50,+,CGGATGGAGCTGTTAATGTAAGTGGAGTTTCTGCAATGGTAATTAGGAGG,Distal Intergenic,19,45232684,45235812,3129,2,Lbx1-201,-57815,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,15,50,16814,ENSMUSG00000025216,mapped to different genes,19,45293545,45293628,84,*,84,9,0.761904762,0.801696713,0.107142857,0.000000201,CpGisland,TRUE,U13,Hc-P
17203,cg24803018,-0.00000276,0.00000184,-1.498917781,0.13491259,loss,ns,-0.00000208,0.00000313,-0.666014495,0.50589713,neg,ns,0.0004906,0.000916655,0.535206409,0.592890848,pos,ns,0.227025254,-0.00000522,0.0000315,-0.165446539,0.868700365,neg,ns,0.956563384,Clk2,Clk2_threeUTR,3,89176394,89176443,89176394,89176395,50,+,CGGTATCTGACCTCAGAGGCAGAGGAACACCACCAGCTCTTCGATCTGAT,3' UTR,3,89164795,89176921,12127,1,Clk2-202,11599,Clk2-202;Clk2-201;Clk2-209;Clk2-207;Clk2-203;Clk2-204;Clk2-211;Clk2-205;Clk2-208;Scamp3-201;Scamp3-203;Scamp3-206;Scamp3-202;Scamp3-208;Scamp3-207;Scamp3-205;Scamp3-204,Clk2;Clk2;Clk2;Clk2;Clk2;Clk2;Clk2;Clk2;Clk2;Scamp3;Scamp3;Scamp3;Scamp3;Scamp3;Scamp3;Scamp3;Scamp3,0;0;0;0;0;0;0;2439;1359;0;0;-1053;0;-1088;-1094;-1178;-1315,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,10,12748,ENSMUSG00000068917,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2555,cg08065918,-0.0000197,0.00000612,-3.218203501,0.001426504,loss,ns,-0.00000693,0.0000104,-0.665945216,0.505941352,neg,ns,0.000709177,0.003046716,0.232767709,0.816095395,pos,ns,0.088259073,-0.0000139,0.000104776,-0.132988873,0.894288465,neg,ns,0.927174526,Ppp3cb,Ppp3cb_Intron,14,20511497,20511546,20511497,20511498,50,+,CGTTCTTCAGATGGAGAGTCCAGAAAAAAGGAAGTGAATGATGGAGAAAA,"Intron (Ppp3cb-202/Ppp3cb, intron 10 of 13)",14,20499364,20546573,47210,2,Ppp3cb-202,35027,Ppp3cb-202;Ppp3cb-205;Ppp3cb-201;Ppp3cb-206;Ppp3cb-207;Ppp3cb-209;Ppp3cb-203,Ppp3cb;Ppp3cb;Ppp3cb;Ppp3cb;Ppp3cb;Ppp3cb;Ppp3cb,0;0;0;0;0;7261;9175,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,10,19056,ENSMUSG00000021816,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11579,cg08229983,-0.0000142,0.0000108,-1.317878687,0.188517301,loss,ns,0.0000122,0.0000184,0.665619653,0.506149192,pos,ns,-0.00272952,0.005377018,-0.507627047,0.612075881,neg,ns,0.213194734,-0.00000302,0.000184915,-0.016319822,0.986989742,neg,ns,0.782651712,Fgf13,Fgf13_Exon,X,59250899,59250948,59250899,59250900,50,-,CGCAGATTGGATGGAATCTTGTCGTAACATAATGTATTCCTGTGTGCCAG,"Exon (Fgf13-205/Fgf13, exon 2 of 3)",20,59062145,59568071,505927,2,Fgf13-203,317123,Fgf13-203;Fgf13-205;Fgf13-206;Fgf13-208,Fgf13;Fgf13;Fgf13;Fgf13,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,9,14168,ENSMUSG00000031137,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17935,cg18225982,-0.00000227,0.000000714,-3.177727933,0.001634032,loss,ns,0.000000807,0.00000121,0.665566505,0.506183126,pos,ns,-0.00000314,0.000355229,-0.008835281,0.992956241,neg,ns,0.00306989,0.00000351,0.0000122,0.287168528,0.774175139,pos,ns,0.021788797,Pcf11,Pcf11_Exon,7,92669458,92669507,92669458,92669459,50,-,CGATCTCCTTGGCGAAGGGCAGGTTCTCCTCGGCTAGAATGGTCAGCATA,Promoter (<=1kb),7,92643543,92669934,26392,2,Pcf11-201,427,Pcf11-201;Pcf11-205;Pcf11-204,Pcf11;Pcf11;Pcf11,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,8,74737,ENSMUSG00000041328,conserved gene and region,7,92669413,92670159,747,*,747,79,0.654618474,0.987863671,0.105756359,4.14E-62,CpGisland,TRUE,U1,Pr-A
2756,cg02481504,0.0000242,0.00000868,2.785620634,0.005671477,gain,ns,0.00000981,0.0000147,0.66552828,0.506207533,pos,ns,-0.0000651,0.004320017,-0.015075356,0.98798176,neg,ns,0.005251073,0.0000469,0.000148565,0.315906782,0.752285847,pos,ns,0.157644622,Prdm13,Prdm13_Intron,4,21680414,21680463,21680414,21680415,50,-,CGTGAGCGCCTCATTACCAGGCGAGACAATATCCTGTATGTATAGGCCAT,"Intron (Prdm13-205/Prdm13, intron 3 of 3)",4,21677480,21685963,8484,2,Prdm13-205,5500,Prdm13-205;Prdm13-201;Prdm13-202;Prdm13-203;Prdm13-206;Prdm13-204,Prdm13;Prdm13;Prdm13;Prdm13;Prdm13;Prdm13,0;0;0;0;0;5382,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,23,230025,ENSMUSG00000040478,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
27202,cg08273752,0.000000275,0.00000241,0.114148789,0.90919374,gain,ns,0.00000272,0.00000409,0.665514328,0.506216441,pos,ns,0.002930039,0.001198299,2.445165055,0.015034856,pos,ns,1.822900729,-0.0000446,0.0000412,-1.083203971,0.279559684,neg,ns,0.950865298,Top1,Top1_Intergenic_upstream,2,160514133,160514182,160514181,160514182,50,-,TGCTCAATTTTCCTCAAAATTCAATTAAACTTCGTTTATTCTGGGGATCG,Distal Intergenic,2,160645888,160722764,76877,1,Top1-201,-131755,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,8,21969,ENSMUSG00000070544,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5260,cg22397546,0.0000848,0.0000101,8.406645211,1.55E-15,gain,yes,-0.0000114,0.0000171,-0.665460786,0.50625063,neg,ns,0.008204828,0.005021381,1.633978415,0.103278489,pos,ns,0.985990123,-0.0000995,0.000172685,-0.576120504,0.564951756,neg,ns,0.03053635,Tlx3,Tlx3_fiveUTR,11,33203575,33203624,33203575,33203576,50,+,CGCGGGCCCGACAGGCTCTGTGTCATCTTTCTTGAACCGAACCTGGAGTT,Promoter (<=1kb),11,33200752,33203589,2838,2,Tlx3-201,0,Tlx3-201,Tlx3,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,20,27140,ENSMUSG00000040610,conserved gene and region,11,33202715,33203697,983,*,983,96,0.695829095,0.806819251,0.097660224,1.02E-71,CpGisland,TRUE,NA,NRS
21575,cg00403869,-0.00000243,0.00000161,-1.511348528,0.131718352,loss,ns,-0.00000182,0.00000273,-0.665389464,0.506296173,neg,ns,-0.000858964,0.000799879,-1.073868041,0.283716997,neg,ns,0.547114645,0.0000197,0.0000275,0.717451175,0.473636013,pos,ns,0.968667807,Itpr1,Itpr1_Exon,6,108403299,108403348,108403347,108403348,50,+,GTGTTCTACAACGACAGAGCCTCTTTCCAGACTCTGATCCAGATGATGCG,"Exon (Itpr1-201/Itpr1, exon 33 of 62)",6,108213096,108551109,338014,1,Itpr1-201,190203,Itpr1-201;Itpr1-205;Itpr1-213,Itpr1;Itpr1;Itpr1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,5,16438,ENSMUSG00000030102,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14304,cg09606114,-0.0000259,0.00000815,-3.174333813,0.001652646,loss,ns,-0.00000921,0.0000138,-0.665366383,0.506310911,neg,ns,-0.004902662,0.00405689,-1.208477701,0.227784575,neg,ns,0.642475689,-0.000170442,0.000139516,-1.221667772,0.222761482,neg,ns,0.70706364,Smg6,Smg6_threeUTR,11,75139309,75139358,75139309,75139310,50,-,CGTCCCAGACACCATGGGAAAGGAAATGGGAAGCCAAGAGGGAACACGAC,3' UTR,11,74925823,75164448,238626,1,Smg6-201,213486,Smg6-201;Smg6-202;Smg6-204;Smg6-205,Smg6;Smg6;Smg6;Smg6,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,34,103677,ENSMUSG00000038290,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
8203,cg18231748,0.0000144,0.00000331,4.347411738,0.0000187,gain,ns,-0.00000375,0.00000563,-0.665318284,0.506341627,neg,ns,-0.000512644,0.001649343,-0.310817368,0.756148351,neg,ns,0.121392991,0.0000725,0.0000567,1.277884991,0.202246047,pos,ns,0.919029347,Jarid2,Jarid2_Exon,13,44848377,44848426,44848377,44848378,50,+,CGATGTTAGTTCTTCAGATTTTGAAGAAGGGCCGTCGAGGAAAAGGTTAG,"Exon (Jarid2-210/Jarid2, exon 4 of 19)",13,44730774,44920108,189335,1,Jarid2-210,117603,Jarid2-212;Jarid2-210;Jarid2-201;Jarid2-209;Jarid2-203;Jarid2-208;Jarid2-215;Jarid2-216;Jarid2-206;Jarid2-205;Jarid2-202;Jarid2-211;Jarid2-207,Jarid2;Jarid2;Jarid2;Jarid2;Jarid2;Jarid2;Jarid2;Jarid2;Jarid2;Jarid2;Jarid2;Jarid2;Jarid2,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,21,16468,ENSMUSG00000038518,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17311,cg25653943,0.000000853,0.0000046,0.185420217,0.85302071,gain,ns,0.0000052,0.00000781,0.665189599,0.506423809,pos,ns,0.002385699,0.002288937,1.0422738,0.298096894,pos,ns,0.525642549,-0.000117422,0.0000787,-1.491709,0.136792348,neg,ns,0.563478017,Scyl2,Scyl2_Exon,10,89656835,89656884,89656883,89656884,50,-,TTTACAAATTCTGAAGTCAAACAAGGCAAAATTCTCTGCACAATGACACG,"Exon (Scyl2-204/Scyl2, exon 9 of 18)",10,89638721,89686285,47565,2,Scyl2-204,29401,Scyl2-204;Scyl2-202;Scyl2-201;Scyl2-203;Scyl2-206,Scyl2;Scyl2;Scyl2;Scyl2;Scyl2,0;-2364;0;-2660;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,213326,ENSMUSG00000069539,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25187,cg24052153,-0.00000451,0.0000115,-0.391818874,0.69546126,loss,ns,0.000013,0.0000196,0.665159914,0.506442767,pos,ns,-0.011514933,0.0057324,-2.008745642,0.045430943,neg,ns,1.342648252,0.000359777,0.000197137,1.825013546,0.068961199,pos,ns,0.791120963,Pcdh19,Pcdh19_Intergenic_downstream,X,133559679,133559728,133559679,133559680,50,+,CGTGAAACATTTAATTTGAACTGAAACCACTGCACAAGAAAATAAACAGT,Distal Intergenic,20,133582880,133588011,5132,2,Pcdh19-204,28283,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,8,279653,ENSMUSG00000051323,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20612,cg27124812,-0.000012,0.00000596,-2.013848707,0.044889117,loss,ns,-0.00000674,0.0000101,-0.665069804,0.506500319,neg,ns,0.001346419,0.002967853,0.453667795,0.650385371,pos,ns,0.186829236,-0.000234798,0.000102064,-2.300495342,0.022083848,neg,ns,0.935204298,Rsbn1,Rsbn1_Exon,3,103928455,103928504,103928455,103928456,50,+,CGCCTTAAAATGTACAATAAGGAAGTACAAACCGTCTGTGCTGGCCTGAC,"Exon (Rsbn1-201/Rsbn1, exon 2 of 8)",3,103914120,103966613,52494,1,Rsbn1-201,14335,Rsbn1-201;Rsbn1-202;Rsbn1-203;Rsbn1-204,Rsbn1;Rsbn1;Rsbn1;Rsbn1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,16,229675,ENSMUSG00000044098,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17476,cg21630368,-0.000000471,0.000000792,-0.594192821,0.552816524,loss,ns,-0.000000895,0.00000135,-0.664966907,0.506566043,neg,ns,0.000290348,0.000394224,0.736504725,0.461980569,pos,ns,0.335376291,-0.00000755,0.0000136,-0.556682871,0.578145765,neg,ns,0.01655795,Crebzf,Crebzf_Exon,7,90444014,90444063,90444062,90444063,50,+,CATGTGGACAAGGATAAGGTGTCGGTGGAGTTCTGCTCGGCGTGCGCCCG,"Exon (Crebzf-201/Crebzf, exon 1 of 1)",7,90442729,90446104,3376,1,Crebzf-201,1285,Crebzf-201;Crebzf-203;Crebzf-204;Crebzf-205;Crebzf-202;Crebzf-208;Crebzf-207;Crebzf-209;Crebzf-206,Crebzf;Crebzf;Crebzf;Crebzf;Crebzf;Crebzf;Crebzf;Crebzf;Crebzf,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,9,233490,ENSMUSG00000051451,conserved gene and region,7,90443049,90444118,1070,*,1070,137,0.710280374,1.028961703,0.128037383,4.26E-120,CpGisland,TRUE,U1,Pr-A
22848,cg27543783,-0.00000162,0.000000675,-2.40451837,0.016780034,loss,ns,-0.000000762,0.00000115,-0.664672815,0.506753912,neg,ns,-0.0000782,0.000335856,-0.232699521,0.8161483,neg,ns,0.08823092,-0.0000147,0.0000116,-1.27533464,0.203145724,neg,ns,0.01173944,Unk,Unk_Exon,11,116030431,116030480,116030431,116030432,50,-,CGCCCCCGGCCGCTACCGCTCAGGTGCTGCAGGCACAGCCCGAGAAACCG,Promoter (<=1kb),11,116030322,116061214,30893,1,Unk-201,109,H3f3b-202;Unk-201;Unk-202;Unk-207,H3f3b;Unk;Unk;Unk,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,217331,ENSMUSG00000020770,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
26508,cg20658885,0.00000072,0.00000982,0.073293107,0.941620145,gain,ns,-0.0000111,0.0000167,-0.664625775,0.506783965,neg,ns,0.006377032,0.004889961,1.304107101,0.19316454,pos,ns,0.714072596,-0.000272518,0.000168165,-1.620538139,0.106133443,neg,ns,0.831463749,Casz1,Casz1_Intron,4,148851518,148851567,148851566,148851567,50,-,GCAGACATTTTAACAGCAATATGCTAGATAGTTGGGTGTCCCCTGAGGCG,"Intron (Casz1-201/Casz1, intron 2 of 15)",4,148804429,148945129,140701,1,Casz1-201,47089,Casz1-201;Casz1-202,Casz1;Casz1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,94,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21358,cg05462042,0.000000223,0.00000352,0.063157224,0.949682011,gain,ns,0.00000398,0.00000599,0.664598115,0.506801637,pos,ns,0.003162434,0.001753867,1.803120268,0.072340268,pos,ns,1.140619887,-0.00007,0.0000603,-1.16038358,0.246785514,neg,ns,0.904118867,Glis1,Glis1_Intron,4,107460631,107460680,107460679,107460680,50,-,TTTTCCCTGTGAACCTAATGGAACATGACAGACAATATTTACAAGGCACG,"Intron (Glis1-205/Glis1, intron 2 of 2)",4,107434617,107563900,129284,1,Glis1-205,26014,Glis1-205;Glis1-201;Glis1-202,Glis1;Glis1;Glis1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,11,230587,ENSMUSG00000034762,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19756,cg02753243,-0.000000371,0.00000374,-0.099091771,0.921129452,loss,ns,0.00000422,0.00000635,0.664594718,0.506803808,pos,ns,-0.002085342,0.00186171,-1.120121854,0.263528893,neg,ns,0.579171762,0.000114117,0.000064,1.782408341,0.075661266,pos,ns,0.927959346,Gpat3,Gpat3_Intergenic_downstream,5,101032683,101032732,101032731,101032732,50,-,ATATGCTAGAAGTGTACAGTTATTTCCCCATAATGAAGTGGCACTATGCG,Distal Intergenic,5,100846417,100846850,434,1,Gpat3-205,186315,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,15,15,231510,ENSMUSG00000029314,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14466,cg10202523,-0.00000204,0.00000177,-1.154126478,0.249337284,loss,ns,0.000002,0.000003,0.664541352,0.506837904,pos,ns,0.002824159,0.000880027,3.209174131,0.001470563,pos,ns,2.832516303,-0.0000883,0.0000303,-2.917230069,0.003789524,neg,ns,0.965439545,Zc3h3,Zc3h3_Intron,15,75799485,75799534,75799485,75799486,50,-,CGAGTGGTTTAAATTGAAAACCCCCAACTGAATCAATATTTACTGCATTG,"Intron (Zc3h3-201/Zc3h3, intron 4 of 11)",15,75754430,75841915,87486,2,Zc3h3-201,42381,Zc3h3-201;Zc3h3-203;Zc3h3-202,Zc3h3;Zc3h3;Zc3h3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,18,223642,ENSMUSG00000075600,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15023,cg02168903,-0.00000164,0.00000177,-0.926849082,0.354725915,loss,ns,-0.000002,0.00000301,-0.664537181,0.506840569,neg,ns,0.000799137,0.000880483,0.907612001,0.364788241,pos,ns,0.43795917,-0.0000571,0.0000303,-1.885590215,0.060285092,neg,ns,0.960149299,Tnfaip1,Tnfaip1_Exon,11,78529173,78529222,78529221,78529222,50,-,GTGTCATCTCGGAGGTAATTCAAAATGGTGCCAAAGTGCTTTCCACAACG,"Exon (Tnfaip1-201/Tnfaip1, exon 3 of 7)",11,78522850,78536271,13422,2,Tnfaip1-201,7049,Tnfaip1-201;Tnfaip1-202,Tnfaip1;Tnfaip1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,21927,ENSMUSG00000017615,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13212,cg01560036,0.0000134,0.00000364,3.681502842,0.000273419,gain,ns,0.00000411,0.00000618,0.66451398,0.506855393,pos,ns,0.001252972,0.001810194,0.692175892,0.489345,pos,ns,0.310384844,0.0000154,0.0000623,0.247413008,0.804752391,pos,ns,0.059172555,Foxb1,Foxb1_Promoter,9,69766355,69766404,69766403,69766404,50,+,ACAAAGGTTGGACTAAGCCAAATTGCATTGCACTTGTGAACCGAGTCCCG,Promoter (5-6kb),9,69757710,69760940,3231,2,Foxb1-201,-5415,NA,NA,NA,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,8,21,64290,ENSMUSG00000059246,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
1161,cg10478876,-0.00000229,0.000000937,-2.4375972,0.015347065,loss,ns,0.00000106,0.00000159,0.664481807,0.50687595,pos,ns,0.000552421,0.000466603,1.183921422,0.237351173,pos,ns,0.624608618,-0.0000113,0.000016,-0.706413112,0.480461855,neg,ns,0.034172541,Osbp,Osbp_Exon,19,11966208,11966257,11966256,11966257,50,+,GAGGGCTGGCTCTTCAAATGGACCAATTATATCAAAGGCTACCAGCGGCG,Promoter (<=1kb),19,11965941,11994112,28172,1,Osbp-201,267,Osbp-201,Osbp,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,6,76303,ENSMUSG00000024687,conserved gene and region,19,11966253,11966407,155,*,155,13,0.677419355,0.750745157,0.083870968,0.000000003,CpGisland,TRUE,U1,Pr-A
8864,cg10530153,-0.00000378,0.00000187,-2.017745311,0.044479085,loss,ns,0.00000212,0.00000319,0.66429554,0.506994973,pos,ns,0.001064568,0.000933206,1.140764196,0.254848582,pos,ns,0.593717779,0.0000309,0.0000321,0.963876111,0.33585932,pos,ns,0.05810606,Gbf1,Gbf1_fiveUTR,19,46152508,46152557,46152508,46152509,50,+,CGCAGTTACCAGGCAGCGGGCTAGACTGAGGCTAGTTACCACGTCAGTGA,Promoter (<=1kb),19,46152509,46286510,134002,1,Gbf1-201,0,Gbf1-201;Gbf1-204;Gbf1-214;Gbf1-207;Gbf1-216;Pitx3-201,Gbf1;Gbf1;Gbf1;Gbf1;Gbf1;Pitx3,0;0;0;0;-23;-4182,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,18,107338,ENSMUSG00000025224,conserved gene but different region,19,46152414,46152595,182,*,182,13,0.582417582,0.842592593,0.071428571,2.16E-08,CpGisland,TRUE,U2,Pr-W
7518,cg19071053,-0.0000157,0.00000378,-4.144283327,0.000044,loss,ns,0.00000426,0.00000642,0.664186363,0.507064744,pos,ns,-0.004208368,0.00188043,-2.237981838,0.02593217,neg,ns,1.586161148,0.000144225,0.0000647,2.230236202,0.026447375,pos,ns,0.885685383,Dnajb5,Dnajb5_fiveUTR,4,42950865,42950914,42950913,42950914,50,+,TAGCCAGCTTGATGTTTAAAATTCAGCTGGAGCCCTTAAAACTTCGAGCG,5' UTR,4,42949814,42959425,9612,1,Dnajb5-201,1051,Dnajb5-201;Dnajb5-203;Dnajb5-205;Dnajb5-206;Dnajb5-202;Dnajb5-207;Dnajb5-204,Dnajb5;Dnajb5;Dnajb5;Dnajb5;Dnajb5;Dnajb5;Dnajb5,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,8,56323,ENSMUSG00000036052,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15550,cg11104231,-0.00000325,0.00000522,-0.623149035,0.533644764,loss,ns,-0.00000589,0.00000887,-0.664183392,0.507066643,neg,ns,-0.007180315,0.002597619,-2.764191452,0.006047915,neg,ns,2.218394352,0.000277177,0.0000893,3.102772533,0.002093731,pos,ns,0.805662031,Gm50297,Gm50297_Intergenic_downstream,18,81724911,81724960,81724959,81724960,50,-,ATTACATAGATTGTGATTTATTACCCATCACACTACAAAAATCCGCTGCG,Distal Intergenic,18,82261062,82261262,201,2,Gm50297-201,536351,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,17,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14333,cg27495736,-0.000000292,0.000000384,-0.761146413,0.447148219,loss,ns,0.000000433,0.000000652,0.664129539,0.50710106,pos,ns,0.000333906,0.000191045,1.747789901,0.08149048,pos,ns,1.088893126,-0.00000408,0.00000657,-0.621643745,0.534633029,neg,ns,0.008471995,Hic1,Hic1_Exon,11,75173666,75173715,75173666,75173667,50,+,CGCCCCCGCGTCTCCAGGGCAACCGTGGCTTTCGATTGTTACTGTGGGAA,Promoter (4-5kb),11,75164565,75169519,4955,2,Hic1-201,-4147,Dph1-201;Dph1-205;Dph1-204;Hic1-201;Ovca2-201;Ovca2-202,Dph1;Dph1;Dph1;Hic1;Ovca2;Ovca2,0;0;7597;0;5120;5072,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,10,15248,ENSMUSG00000043099,mapped to different genes,11,75173365,75173778,414,*,414,46,0.719806763,0.891573034,0.111111111,1.73E-37,CpGisland,TRUE,U3,Pr-B
5584,cg10078834,0.0000432,0.0000193,2.2373323,0.025975036,gain,ns,0.0000218,0.0000328,0.664107978,0.50711484,pos,ns,0.06950029,0.009604189,7.236456198,3.64E-12,pos,yes,11.43877351,-0.001854324,0.000330287,-5.614275747,4.39E-08,neg,yes,0.637154534,Pbx3,Pbx3_Intron,2,34287021,34287070,34287069,34287070,50,-,TTATCTGTTAGCCGTTCATTTGATTTTCCATTTCAATTACGGATTGCACG,"Intron (Pbx3-202/Pbx3, intron 2 of 7)",2,34171457,34372038,200582,2,Pbx3-202,84968,Pbx3-202;Pbx3-201;Pbx3-210;Pbx3-206;Pbx3-207;Pbx3-209;Pbx3-204;Pbx3-205;Pbx3-203,Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,82,18516,ENSMUSG00000038718,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16717,cg08354330,0.000000677,0.00000195,0.346310129,0.729344587,gain,ns,-0.0000022,0.00000332,-0.664098804,0.507120703,neg,ns,-0.002140494,0.000972478,-2.201071205,0.028467831,neg,ns,1.545645624,0.00008,0.0000334,2.391184172,0.017390257,pos,ns,0.960749758,Ints2,Ints2_Exon,11,86244435,86244484,86244483,86244484,50,-,CAGACGTAAGAGTGCACTGGCTTTCACAACATGCTCTTCTTTCAGCCCCG,"Exon (Ints2-201/Ints2, exon 8 of 25)",11,86210681,86257550,46870,2,Ints2-201,13066,Ints2-201;Ints2-202;Ints2-207,Ints2;Ints2;Ints2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,70422,ENSMUSG00000018068,conserved gene but different region,11,86244439,86244536,98,*,98,8,0.56122449,1.12,0.081632653,0.00000999,CpGisland,TRUE,U10,Tr-S
24337,cg25751494,0.0000309,0.00000717,4.315787865,0.0000214,gain,ns,0.00000808,0.0000122,0.664066796,0.50714116,pos,ns,0.010227845,0.003566704,2.867589994,0.004419572,pos,ns,2.354619779,-0.000279696,0.000122659,-2.280276695,0.023269982,neg,ns,0.122360673,Pou3f1,Pou3f1_Intergenic_downstream,4,124672491,124672540,124672491,124672492,50,-,CGCTGCTGGCGCTACCCCAATCATCTCTGCAATCAGAGCTTTTAATTAGG,Distal Intergenic,4,124656807,124660655,3849,1,Pou3f1-201,15733,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,11,85,18991,ENSMUSG00000090125,mapped to different genes,4,124672392,124672501,110,*,110,9,0.609090909,0.906593407,0.081818182,0.00000205,CpGisland,TRUE,U13,Hc-P
5944,cg10320446,-0.00000211,0.00000204,-1.033010479,0.302404204,loss,ns,0.0000023,0.00000347,0.664021909,0.507169849,pos,ns,0.000347457,0.001015705,0.342084171,0.732519347,pos,ns,0.135180901,-0.0000295,0.0000349,-0.843435902,0.399635031,neg,ns,0.080759769,Mtpn,Mtpn_Exon,6,35539556,35539605,35539604,35539605,50,-,TCACCTCATCCAAGTCTCCGTTTTTCAGGGCCCACATGAACTCCTTGTCG,Promoter (<=1kb),6,35508906,35539888,30983,2,Mtpn-201,283,Mtpn-201;Mtpn-202,Mtpn;Mtpn,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,14489,ENSMUSG00000029840,conserved gene and region,6,35539574,35539841,268,*,268,30,0.675373134,0.995049505,0.111940299,1.03E-24,CpGisland,TRUE,U1,Pr-A
27834,cg13932426,-0.0000281,0.00000691,-4.073093538,0.000059,loss,ns,-0.00000779,0.0000117,-0.664004275,0.50718112,neg,ns,-0.006667829,0.003439007,-1.938882035,0.05342303,neg,ns,1.272271484,0.000137139,0.000118267,1.159569988,0.247116269,pos,ns,0.94490192,Esrrg,Esrrg_Intron,1,188185236,188185285,188185236,188185237,50,-,CGAGCCATCAGCCTTGATAATGGCTGTAAAATTTCATAATTACATGGCCT,"Intron (Esrrg-203/Esrrg, intron 6 of 7)",1,187609029,188214386,605358,1,Esrrg-203,576207,Esrrg-203;Esrrg-201;Esrrg-202,Esrrg;Esrrg;Esrrg,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,60,26381,ENSMUSG00000026610,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19378,cg08714594,-0.00000264,0.00000354,-0.74618851,0.456119022,loss,ns,0.00000399,0.00000602,0.663912065,0.507240059,pos,ns,0.002437854,0.00176234,1.383304705,0.167566846,pos,ns,0.775811906,-0.0000679,0.0000606,-1.119512542,0.263788192,neg,ns,0.92398764,Efnb1,Efnb1_Exon,X,99145359,99145408,99145407,99145408,50,+,CGAGCAGAAGCAGGGCGGCCCTATGAGTACTACAAGCTGTACCTGGTGCG,"Exon (Efnb1-201/Efnb1, exon 2 of 5)",20,99136130,99148991,12862,1,Efnb1-201,9229,Efnb1-201;Efnb1-202,Efnb1;Efnb1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,14,13641,ENSMUSG00000031217,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17856,cg02234487,-0.00003,0.0000147,-2.0451909,0.04168005,loss,ns,0.0000165,0.0000249,0.663866874,0.507268945,pos,ns,-0.005135525,0.007299132,-0.703580303,0.482222286,neg,ns,0.316752722,0.000109351,0.000251017,0.435631005,0.663407642,pos,ns,0.324043722,Cntn1,Cntn1_Intron,15,92161291,92161340,92161291,92161292,50,+,CGCCTCAGATAGTTTCTTGCATTAAGTGACTGCAGTGAAATGCTTAATAT,"Intron (Cntn1-203/Cntn1, intron 1 of 8)",15,92051165,92249451,198287,1,Cntn1-203,110126,Cntn1-203;Cntn1-204;Cntn1-201;Cntn1-202,Cntn1;Cntn1;Cntn1;Cntn1,0;0;0;-17,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,12805,ENSMUSG00000055022,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8330,cg04137710,-0.0000269,0.0000051,-5.274032352,0.000000251,loss,yes,-0.00000576,0.00000867,-0.663853637,0.507277407,neg,ns,-0.005652009,0.002540118,-2.225096425,0.026794135,neg,ns,1.571960253,0.000295682,0.0000874,3.384852619,0.000803771,pos,ns,0.932540633,Zeb2,Zeb2_Intron,2,45024334,45024383,45024334,45024335,50,+,CGCTAAGTTATCAACTGAGCTATCTCAAGTGGCTCTTGCCAGCTATCGGA,"Intron (Zeb2-212/Zeb2, intron 3 of 10)",2,44983632,45117395,133764,2,Zeb2-212,93012,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-227;Zeb2-216;Zeb2-229;Zeb2-218;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11331,cg09486322,-0.000053,0.00000825,-6.420079584,5.11E-10,loss,yes,0.0000093,0.000014,0.663831396,0.507291623,pos,ns,0.005459757,0.004105464,1.329875799,0.184536846,pos,ns,0.733916908,-0.0005,0.000141187,-3.541410409,0.00045912,neg,ns,0.76191717,Gm13533,Gm13533_Intergenic_upstream,2,57672154,57672203,57672154,57672155,50,+,CGGCTAAGCCATCTGGCTCAGTGTCAAGCATTTACACCAACTGTAGTCTT,Distal Intergenic,2,57643648,57643824,177,2,Gm13533-201,-28330,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,7,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10333,cg13802770,0.000037,0.00000835,4.434829413,0.0000128,gain,ns,0.00000941,0.0000142,0.663443366,0.507539697,pos,ns,0.004290259,0.004154267,1.03273552,0.302532689,pos,ns,0.519227692,0.00000292,0.000142865,0.020417565,0.983723407,pos,ns,0.879274672,Ext1,Ext1_threeUTR,15,53068757,53068806,53068757,53068758,50,+,CGGCATGTAGCCAAACCAGCTGGCAAACGTATTCATGCAGCTCTGTCGCT,3' UTR,15,53064038,53346159,282122,2,Ext1-201,277353,Ext1-201;Ext1-203,Ext1;Ext1,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,16,14042,ENSMUSG00000061731,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5439,cg01562774,0.0000403,0.00000371,10.84302884,1.94E-23,gain,yes,-0.00000418,0.00000631,-0.663100776,0.507758773,neg,ns,0.005473899,0.0018488,2.960784404,0.00330547,pos,ns,2.480766784,-0.000113742,0.0000636,-1.788953587,0.074598533,neg,ns,0.087721661,Twist1,Twist1_Exon,12,33958481,33958530,33958529,33958530,50,+,GAGCGACGAGCTGGACTCCAAGATGGCAAGCTGCAGCTATGTGGCTCACG,Promoter (<=1kb),12,33957671,33959829,2159,1,Twist1-201,810,Twist1-201,Twist1,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,7,22160,ENSMUSG00000035799,conserved gene and region,12,33958529,33958782,254,*,254,18,0.696850394,0.620352782,0.070866142,2.23E-11,CpGisland,TRUE,U3,Pr-B
24504,cg18687248,-0.00000106,0.000000433,-2.4365552,0.015390499,loss,ns,0.000000488,0.000000736,0.663095442,0.507762184,pos,ns,0.000318873,0.000215704,1.47828749,0.140346153,pos,ns,0.852799486,-0.000015,0.00000742,-2.027049694,0.04351283,neg,ns,0.010427593,Gabpb1,Gabpb1_Promoter,2,126675214,126675263,126675214,126675215,50,-,CGGAAACCCGGCGCCTTAATGCAATAAACAGGAAATCGCGGGGATGATCT,Promoter (<=1kb),2,126627442,126675568,48127,2,Gabpb1-206,305,Gabpb1-206;Gabpb1-205;Gabpb1-204;Gabpb1-201;Gabpb1-203;Gabpb1-202;Gabpb1-208;Gabpb1-207,Gabpb1;Gabpb1;Gabpb1;Gabpb1;Gabpb1;Gabpb1;Gabpb1;Gabpb1,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,4,12,14391,ENSMUSG00000027361,conserved gene but different region,2,126674561,126675949,1389,*,1389,168,0.699064075,0.9905509,0.120950324,2.65E-142,CpGisland,TRUE,U1,Pr-A
8601,cg15464531,-0.0000116,0.0000106,-1.100391516,0.272015306,loss,ns,-0.0000119,0.000018,-0.662942296,0.507860133,neg,ns,0.028760682,0.00526777,5.459745131,9.79E-08,pos,ns,7.009390918,-0.000894216,0.000181158,-4.936108855,0.0000013,neg,yes,0.733365254,Btrc,Btrc_Intron,19,45432954,45433003,45432954,45432955,50,+,CGTTGCACATTCCTTGTATTGGCTATGAAATATTGAACTGTCAGAATGTG,"Intron (Btrc-204/Btrc, intron 1 of 2)",19,45363734,45507736,144003,1,Btrc-204,69220,Btrc-204;Btrc-201;Btrc-210;Btrc-206;Btrc-202;Btrc-203,Btrc;Btrc;Btrc;Btrc;Btrc;Btrc,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,63,98,12234,ENSMUSG00000025217,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3462,cg14334667,-0.0000343,0.00000672,-5.105665221,0.000000576,loss,yes,-0.00000757,0.0000114,-0.662885288,0.507896597,neg,ns,-0.005583843,0.003343633,-1.669992644,0.095930182,neg,ns,1.018044733,0.0000732,0.000114987,0.637009684,0.524588667,pos,ns,0.584898852,Bcl11a,Bcl11a_Intron,11,24162254,24162303,24162254,24162255,50,+,CGAGGGCGCAGGATGTTGTATAATTTGGTTCACGTTGTTAGCCTCTCAAA,"Intron (Bcl11a-201/Bcl11a, intron 3 of 4)",11,24078056,24173194,95139,1,Bcl11a-201,84198,Bcl11a-201;Bcl11a-203;Bcl11a-202;Bcl11a-204;Bcl11a-206,Bcl11a;Bcl11a;Bcl11a;Bcl11a;Bcl11a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,98,14025,ENSMUSG00000000861,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13772,cg01166318,-0.00000466,0.0000109,-0.426623855,0.669949432,loss,ns,-0.0000123,0.0000186,-0.662712513,0.508007116,neg,ns,0.007545975,0.005438354,1.387547698,0.166271417,pos,ns,0.779182402,-0.000497307,0.000187025,-2.659045168,0.00824326,neg,ns,0.650120809,Marchf4,Marchf4_Exon,1,72534995,72535044,72535043,72535044,50,-,AGGTCATTGAAGAGCATGCGGCAGCGGCACTTGAGGAGACCCTGGTGGCG,"Exon (Marchf4-201/Marchf4, exon 1 of 4)",1,72427112,72536930,109819,2,Marchf4-201,1886,Marchf4-201,Marchf4,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,,NA,mapped to different genes,1,72534850,72535044,195,*,195,12,0.676923077,0.541666667,0.061538462,0.000000447,CpGisland,TRUE,U13,Hc-P
13025,cg16670915,-0.00000811,0.00000325,-2.498607017,0.012985678,loss,ns,-0.00000365,0.00000551,-0.662691849,0.508020335,neg,ns,-0.002896329,0.001615092,-1.793290214,0.07390118,neg,ns,1.131348629,0.0000706,0.0000555,1.271117205,0.20463991,pos,ns,0.945934493,Gucy2e,Gucy2e_Exon,11,69225039,69225088,69225039,69225040,50,+,CGGATCAGATCCTCCAGGTTACTAGAGTACTGCTCCAGCATCCGAAGCAT,"Exon (Gucy2e-201/Gucy2e, exon 13 of 19)",11,69218117,69237022,18906,2,Gucy2e-201,11934,Gucy2e-201;Gucy2e-203;Gucy2e-202;Gucy2e-204,Gucy2e;Gucy2e;Gucy2e;Gucy2e,0;0;0;11934,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,14919,ENSMUSG00000020890,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18686,cg26705314,0.00000471,0.0000526,0.089470379,0.928765869,gain,ns,0.0000592,0.0000894,0.662499841,0.508143173,pos,ns,0.081931702,0.026180349,3.12951144,0.001917566,pos,ns,2.717249613,-0.001880428,0.00090034,-2.088575245,0.037561541,neg,ns,0.71360691,Fras1,Fras1_Exon,5,96736991,96737040,96736991,96736992,50,-,CGGTGCAGAGGACTGGGAACCTGAACCAATATGCCATCGTCCTGTGTCGC,"Exon (Fras1-201/Fras1, exon 54 of 74)",5,96373955,96784728,410774,1,Fras1-201,363036,Fras1-201,Fras1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,231470,ENSMUSG00000034687,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20745,cg13366440,0.0000155,0.00000311,4.986957066,0.00000102,gain,yes,0.0000035,0.00000528,0.662491385,0.508148583,pos,ns,0.003750604,0.001546536,2.425164663,0.015872425,pos,ns,1.799356717,-0.0000414,0.0000532,-0.778146459,0.437076174,neg,ns,0.081480724,Shisal2b,Shisal2b_Exon,13,104863519,104863568,104863567,104863568,50,-,CCACCTGAGGCTCCACATGTAGCTGTGCTTGTAGGGGAAGTAGCTGCCCG,Promoter (<=1kb),13,104845283,104863893,18611,2,Shisal2b-201,325,Shisal2b-201;Shisal2b-202;Shisal2b-203,Shisal2b;Shisal2b;Shisal2b,0;-207;-100,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,77803,ENSMUSG00000042655,conserved gene and region,13,104863567,104863806,240,*,240,26,0.6875,0.917107584,0.108333333,4.51E-21,CpGisland,TRUE,NA,NRS
20486,cg22027392,-0.000007,0.00000316,-2.216990731,0.02734901,loss,ns,0.00000355,0.00000536,0.662468116,0.508163471,pos,ns,0.003231994,0.001570367,2.05811396,0.040414868,pos,ns,1.393458838,-0.000129168,0.000054,-2.391791024,0.017362067,neg,ns,0.915314138,Ampd1,Ampd1_Exon,3,103080959,103081008,103080959,103080960,50,-,CGTTTCCAAGGACGGAAGACTGTTAATTTGTCCATTCCACTAAGTGAAAC,"Exon (Ampd1-201/Ampd1, exon 4 of 16)",3,103074014,103099720,25707,1,Ampd1-201,6945,Ampd1-201;Ampd1-202;Ampd1-203,Ampd1;Ampd1;Ampd1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,229665,ENSMUSG00000070385,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12710,cg02478218,-0.00000372,0.00000111,-3.362511337,0.000869195,loss,ns,-0.00000124,0.00000188,-0.662395158,0.508210152,neg,ns,-0.001320668,0.000550499,-2.399040217,0.017028411,neg,ns,1.76882587,0.0000359,0.0000189,1.895543513,0.058950418,pos,ns,0.977504488,Gm43516,Gm43516_Intergenic_upstream,3,66935418,66935467,66935466,66935467,50,+,GAAATTATTACACATTAAAACCTCAACATGGGCCAGATCGAAGTGGATCG,Distal Intergenic,3,66953541,66953862,322,1,Gm43516-201,-18074,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,11,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16563,cg13532101,0.00000215,0.000019,0.112757865,0.910295506,gain,ns,0.0000214,0.0000324,0.662228625,0.508316712,pos,ns,-0.011200703,0.009478688,-1.18167236,0.23824141,neg,ns,0.622982748,0.00059823,0.000325971,1.835222074,0.067430722,pos,ns,0.445205069,Rpl31-ps16,Rpl31-ps16_Intergenic_upstream,17,85463601,85463650,85463649,85463650,50,+,ATTAAGTGCTTTCATCATAATAAACTTTAAACTGTTGGCTTTATGAATCG,Distal Intergenic,17,85498633,85499008,376,1,Rpl31-ps16-201,-34983,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,13,668850,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
16844,cg17200683,0.0000015,0.00000107,1.393673533,0.164414507,gain,ns,0.00000121,0.00000182,0.662162733,0.508358878,pos,ns,-0.001198305,0.00053461,-2.24145677,0.02570388,neg,ns,1.590001313,0.0000307,0.0000184,1.671421084,0.095647626,pos,ns,0.981703865,Il1rapl1,Il1rapl1_Exon,X,86747439,86747488,86747439,86747440,50,-,CGTCGTACTCATAGCTTCGGTAGTAGTGTTTCTGACGCATTTGTGAATGG,"Exon (Il1rapl1-203/Il1rapl1, exon 11 of 11)",20,86740870,88115645,1374776,2,Il1rapl1-203,1368157,Il1rapl1-203;Il1rapl1-201,Il1rapl1;Il1rapl1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,18,331461,ENSMUSG00000052372,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4327,cg07736717,-0.0000345,0.00000554,-6.231471876,1.51E-09,loss,yes,0.00000623,0.00000941,0.662132532,0.508378205,pos,ns,-0.000775024,0.002758191,-0.280990043,0.778905485,neg,ns,0.108515238,0.0000947,0.0000949,0.998743214,0.318698041,pos,ns,0.778560884,Samd4b,Samd4b_threeUTR,7,28401587,28401636,28401587,28401588,50,+,CGTCAGATGGTGGAGGTTTTGTCTGTCCCATCTGTGGTAAGAAAGGGAGG,3' UTR,7,28399522,28436191,36670,2,Samd4b-204,34555,Paf1-201;Paf1-202;Paf1-207;Paf1-205;Paf1-208;Samd4b-204;Samd4b-201;Samd4b-203;Samd4b-202,Paf1;Paf1;Paf1;Paf1;Paf1;Samd4b;Samd4b;Samd4b;Samd4b,8636;8546;5762;4936;3153;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,9,11,233033,ENSMUSG00000109336,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5737,cg21045107,0.0000398,0.00000393,10.12689349,5.20E-21,gain,yes,-0.00000442,0.00000667,-0.662114634,0.508389659,neg,ns,0.006549098,0.001955441,3.349166231,0.000910607,pos,ns,3.040668941,-0.000240579,0.0000672,-3.577517483,0.00040233,neg,ns,0.07409353,Sox2,Sox2_Promoter,3,34648599,34648648,34648599,34648600,50,-,CGAGGCTTTGTTTGACTCCGTGTAGCGACAACAAGAGAAACAAAACTACC,Promoter (1-2kb),3,34650405,34652461,2057,1,Sox2-201,-1806,Sox2-201,Sox2,0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,7,62,20674,ENSMUSG00000074637,mapped to different genes,3,34648599,34648789,191,*,191,11,0.523560209,0.841746795,0.057591623,0.000003,CpGisland,TRUE,U13,Hc-P
13836,cg00612925,0.0000993,0.00000742,13.37880962,1.55E-32,gain,yes,0.00000834,0.0000126,0.662090539,0.508405079,pos,ns,0.016345934,0.003692265,4.427074403,0.0000133,pos,ns,4.877722933,-0.0000979,0.000126977,-0.770849647,0.441383161,neg,ns,0.153129366,Six1,Six1_Intron,12,73052087,73052136,73052135,73052136,50,-,GTCTCTAATCAATCCTAATGCGATGGCAATTGGAGTCCCTGATGACTGCG,"Intron (Six1-203/Six1, intron 1 of 1)",12,73043531,73053887,10357,2,Six1-203,1751,Six1-201;Six1-203,Six1;Six1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,18,20471,ENSMUSG00000051367,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
21850,cg25415777,0.0000159,0.000009,1.764973449,0.078552815,gain,ns,0.0000101,0.0000153,0.661992249,0.508467984,pos,ns,0.007602864,0.004478666,1.697573342,0.090591896,pos,ns,1.042910651,-0.000159873,0.000154021,-1.037997259,0.30008028,neg,ns,0.779469609,Gm1943,Gm1943_Exon,8,109251489,109251538,109251489,109251490,50,-,CGTTGCCCCTGAATGGATGGCACGGTGCCAACTCTTCTGCCATCCGCCCT,"Exon (D030068K23Rik-202/D030068K23Rik-202, exon 10 of 10)",8,109340691,109340864,174,2,Gm1943-201,89375,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,28,384864,NA,mapped to different genes,8,109251360,109251796,437,*,437,24,0.544622426,0.749571184,0.054919909,1.62E-12,CpGisland,TRUE,U15,NS
3216,cg07021219,-0.0000207,0.0000141,-1.475553343,0.141078785,loss,ns,-0.0000158,0.0000239,-0.661419562,0.508834581,neg,ns,-0.014571742,0.006998236,-2.082201984,0.038143847,neg,ns,1.418575509,0.000463369,0.000240669,1.92533734,0.055101794,pos,ns,0.231850049,Xpo1,Xpo1_Intron,11,23257047,23257096,23257095,23257096,50,-,TTTCCAGAAATATTTAGTGCAGCAGCATTGAAACGTCCGCCTGCATCACG,"Intron (Xpo1-201/Xpo1, intron 2 of 25)",11,23256041,23297597,41557,1,Xpo1-201,1006,Xpo1-201;Xpo1-204;Xpo1-203;Xpo1-206;Xpo1-202;Xpo1-205,Xpo1;Xpo1;Xpo1;Xpo1;Xpo1;Xpo1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,14,103573,ENSMUSG00000020290,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
1520,cg17151497,-0.0000203,0.00000793,-2.565825176,0.010762928,loss,ns,0.00000891,0.0000135,0.661409325,0.508841135,pos,ns,0.003336295,0.003944956,0.845711368,0.398366074,pos,ns,0.399717654,-0.000319439,0.000135667,-2.354583699,0.019166834,neg,ns,0.852619228,Gm11819,Gm11819_Intergenic_upstream,4,13409455,13409504,13409503,13409504,50,-,GAGAGTTCTGTTGTACCACCTGCCCCCACATTTCATTGTTGCAGGGATCG,Distal Intergenic,4,13444770,13445141,372,1,Gm11819-201,-35315,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,19,22,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6430,cg00659574,-0.0000454,0.00000865,-5.250636214,0.000000282,loss,yes,-0.00000972,0.0000147,-0.661329416,0.508892299,neg,ns,-0.008159188,0.00430546,-1.895079338,0.059012108,neg,ns,1.229058868,0.0000537,0.000148064,0.362675596,0.717094374,pos,ns,0.902515503,Zfp536,Zfp536_Intergenic_downstream,7,37212596,37212645,37212644,37212645,50,-,TTGTAAGCATTATTAAAAATAATAACTTAATGTTTCCTTCCTGTGACTCG,Distal Intergenic,7,37472135,37479986,7852,2,Zfp536-204,267390,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,112,243937,ENSMUSG00000043456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16402,cg10879186,-0.00000224,0.00000301,-0.745228662,0.456698131,loss,ns,0.00000338,0.00000512,0.661219586,0.508962626,pos,ns,-0.001340189,0.001498786,-0.894183163,0.37191759,neg,ns,0.429553281,0.00000177,0.0000515,0.034400481,0.97257994,pos,ns,0.920501749,Rad23a,Rad23a_Exon,8,84838303,84838352,84838303,84838304,50,-,CGCTGCTACCTGAAGAGGGAACAGAGCTGCAAATTCAAGAGAGAGAAATC,"Exon (Rad23a-201/Rad23a, exon 4 of 9)",8,84834652,84840641,5990,2,Rad23a-201,2289,Calr-201;Calr-204;Gadd45gip1-201;Rad23a-206;Rad23a-201;Rad23a-202;Rad23a-204;Rad23a-205;Rad23a-207;Rad23a-203,Calr;Calr;Gadd45gip1;Rad23a;Rad23a;Rad23a;Rad23a;Rad23a;Rad23a;Rad23a,8582;6564;6781;-256;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,19358,ENSMUSG00000003813,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
6211,cg16480545,-0.0000347,0.00000751,-4.61648588,0.00000572,loss,ns,0.00000844,0.0000128,0.661089925,0.509045656,pos,ns,0.002709339,0.003738511,0.724710705,0.469176154,pos,ns,0.328664069,-0.000261664,0.000128567,-2.035231174,0.042677966,neg,ns,0.84241829,Gm9211,Gm9211_Intergenic_downstream,7,36331598,36331647,36331646,36331647,50,-,GCTTGGCAGTTTAAAATTGGGCAATGAATCACACGGATTCACTAGAAACG,Distal Intergenic,7,36234292,36235266,975,1,Gm9211-201,97355,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,12,15,668507,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8624,cg25636884,0.0000102,0.00000606,1.684414629,0.093108051,gain,ns,0.0000068,0.0000103,0.660995642,0.509106037,pos,ns,0.003457048,0.003015294,1.146504557,0.252470616,pos,ns,0.597789161,0.00011812,0.000103696,1.139103883,0.255539282,pos,ns,0.126352959,Lin28b,Lin28b_fiveUTR,10,45470127,45470176,45470175,45470176,50,+,TTCTGCATCAATCTAACATCTTGATTTTGTGCGATCACAAATTTAGCTCG,Promoter (<=1kb),10,45376620,45470201,93582,2,Lin28b-201,25,Lin28b-201;Lin28b-203;Lin28b-202,Lin28b;Lin28b;Lin28b,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,5,380669,ENSMUSG00000063804,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5113,cg14372662,-0.0000284,0.00000731,-3.886762721,0.000124275,loss,ns,-0.00000821,0.0000124,-0.66095115,0.509134531,neg,ns,-0.005547543,0.003637045,-1.525288574,0.128206677,neg,ns,0.892089355,-0.0000178,0.000125078,-0.1419127,0.887241145,neg,ns,0.878341288,Dnm1,Dnm1_Exon,2,32334707,32334756,32334755,32334756,50,+,CTGATTAGCTCCGAGATAACCATGTCCACACACTTGAGACACGGTTCTCG,"Exon (Dnm1-204/Dnm1, exon 10 of 22)",2,32308471,32353263,44793,2,Dnm1-204,18507,Dnm1-204;Dnm1-209;Dnm1-202;Dnm1-201;Dnm1-203;Dnm1-205;Dnm1-214;Dnm1-216;Dnm1-217,Dnm1;Dnm1;Dnm1;Dnm1;Dnm1;Dnm1;Dnm1;Dnm1;Dnm1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,16,13429,ENSMUSG00000026825,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15012,cg04259392,-0.000000967,0.00000598,-0.161769045,0.871593113,loss,ns,-0.00000671,0.0000102,-0.660948235,0.509136398,neg,ns,-0.005332828,0.002976422,-1.791691122,0.074157697,neg,ns,1.129843768,-0.0000647,0.000102359,-0.632201861,0.52772096,neg,ns,0.773262666,Ntrk3,Ntrk3_Exon,7,78461055,78461104,78461103,78461104,50,-,GAGGGCAACACTGGCATTGCTCATGCCCACCACGTTCTCTGCAATGCACG,"Exon (Ntrk3-201/Ntrk3, exon 7 of 17)",7,78175959,78578408,402450,2,Ntrk3-201,117304,Ntrk3-201;Ntrk3-206;Ntrk3-205;Ntrk3-202;Ntrk3-204,Ntrk3;Ntrk3;Ntrk3;Ntrk3;Ntrk3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,15,18213,ENSMUSG00000059146,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20499,cg24037767,0.0000169,0.000013,1.293697709,0.196732926,gain,ns,-0.0000146,0.0000222,-0.660913737,0.509158493,neg,ns,-0.011123516,0.006490693,-1.713764067,0.0875717,neg,ns,1.057636217,0.000316353,0.000223214,1.417259864,0.157411208,pos,ns,0.56920089,Smug1,Smug1_Intron,15,103135780,103135829,103135780,103135781,50,+,CGCGCAAAGCTATAAATAATGGCACAGATCATTAAACCCCGAGAGCAGGC,"Intron (D930007P13Rik-201/D930007P13Rik-201, intron 3 of 6)",15,103153307,103158002,4696,2,Smug1-201,22173,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,12,71726,ENSMUSG00000036061,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
8881,cg13407771,0.00000105,0.00000337,0.312367722,0.754971088,gain,ns,-0.00000379,0.00000573,-0.660858652,0.509193774,neg,ns,0.001962431,0.001679357,1.168561075,0.243478362,pos,ns,0.613539628,-0.000100155,0.0000578,-1.734190199,0.083878437,neg,ns,0.936497625,Gbf1,Gbf1_Intron,19,46236902,46236951,46236950,46236951,50,+,TCCTGAGTGACTCTTATCAGGGGCAGTTGGGCATTCTCAATTGGATTACG,"Intron (Gbf1-201/Gbf1, intron 3 of 39)",19,46152509,46286510,134002,1,Gbf1-201,84393,Gbf1-201;Gbf1-204;Gbf1-214;Gbf1-207,Gbf1;Gbf1;Gbf1;Gbf1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,18,107338,ENSMUSG00000025224,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26707,cg22007471,-0.0000198,0.0000122,-1.61890314,0.106484995,loss,ns,0.0000137,0.0000208,0.660856607,0.509195084,pos,ns,0.009887186,0.006087393,1.624206902,0.105347963,pos,ns,0.977373857,-0.000434734,0.000209345,-2.07663734,0.038658563,neg,ns,0.664868909,Camta1,Camta1_Exon,4,151586446,151586495,151586446,151586447,50,+,CGTGTTTCTCAAATGTTATTAAATAAGCTGCAATTTCCTGAAACAGAAGA,"Exon (Camta1-211/Camta1, exon 4 of 25)",4,150917322,151861669,944348,2,Camta1-211,275174,Camta1-211;Camta1-202;Camta1-201;Camta1-210,Camta1;Camta1;Camta1;Camta1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,22,100072,ENSMUSG00000014592,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11922,cg03778895,-0.000000419,0.00000109,-0.384988688,0.700509798,loss,ns,-0.00000122,0.00000185,-0.66083902,0.509206348,neg,ns,-0.000416499,0.000541657,-0.768934993,0.44251733,neg,ns,0.354069717,0.0000328,0.0000186,1.758581552,0.079635283,pos,ns,0.022925289,Kcnrg,Kcnrg_Exon,14,61682316,61682365,61682364,61682365,50,-,GCAAAGCTCCGAGGAAGTTGGTCCTTTTGTTCCACTATTTATAGATTGCG,"Exon (Dleu2-208/Dleu2-208, exon 1 of 5)",14,61607482,61612826,5345,1,Kcnrg-201,74883,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,328424,ENSMUSG00000046168,mapped to different genes,14,61682087,61683136,1050,*,1050,110,0.700952381,0.857843137,0.104761905,1.02E-85,CpGisland,TRUE,U1,Pr-A
22375,cg23829778,0.0000109,0.00000379,2.868711384,0.004404344,gain,ns,-0.00000426,0.00000644,-0.660804839,0.509228242,neg,ns,-0.000287449,0.001887756,-0.152270055,0.879072996,neg,ns,0.055975061,0.00000198,0.0000649,0.030569708,0.975632372,pos,ns,0.018274104,Grem1,Grem1_Promoter,2,113758893,113758942,113758893,113758894,50,+,CGCGCCTGGAATGCACAGCAAATCACATTTTCCGCTCCCGTTGGAGAGGG,Promoter (<=1kb),2,113746164,113758646,12483,2,Grem1-201,-247,Grem1-201,Grem1,-247,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,4,4,23892,ENSMUSG00000074934,conserved gene but different region,2,113758428,113758970,543,*,543,54,0.67587477,0.887953486,0.099447514,4.38E-41,CpGisland,TRUE,U13,Hc-P
12568,cg11272698,-0.00000167,0.0000008,-2.09071409,0.037367832,loss,ns,0.000000898,0.00000136,0.660560532,0.509384737,pos,ns,0.000212205,0.000398052,0.533107554,0.5943411,pos,ns,0.225964237,0.00000552,0.0000137,0.402960156,0.687255295,pos,ns,0.986630509,Tjp1,Tjp1_threeUTR,7,65299682,65299731,65299682,65299683,50,-,CGGATGATTTTAGAGCAAAAGACCAACCGTCAGGAGTCATGGACGCACAG,3' UTR,7,65296165,65371239,75075,2,Tjp1-202,71508,Tjp1-202;Tjp1-201;Tjp1-207;Tjp1-203,Tjp1;Tjp1;Tjp1;Tjp1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,13,21872,ENSMUSG00000030516,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8325,cg17410756,0.00000543,0.00000338,1.607653822,0.108928996,gain,ns,0.00000379,0.00000574,0.660458692,0.509449979,pos,ns,-0.000887068,0.001681246,-0.527625386,0.598136796,neg,ns,0.22319948,0.0000077,0.0000578,0.133184585,0.894133815,pos,ns,0.917237018,Lzts2,Lzts2_Exon,19,45023917,45023966,45023917,45023918,50,+,CGAGGGGTCCCTACTGGGCCCTCCCACTCAGACAGTGGCCGGTCCTCCTC,"Exon (Lzts2-201/Lzts2, exon 3 of 5)",19,45014476,45026097,11622,1,Lzts2-205,9441,Lzts2-207;Lzts2-205;Lzts2-201;Lzts2-203;Lzts2-204;Lzts2-208;Lzts2-206;Lzts2-202;Pdzd7-201;Pdzd7-203;Pdzd7-202;Pdzd7-204;Pdzd7-205;Pdzd7-206;Pdzd7-207;Pdzd7-208,Lzts2;Lzts2;Lzts2;Lzts2;Lzts2;Lzts2;Lzts2;Lzts2;Pdzd7;Pdzd7;Pdzd7;Pdzd7;Pdzd7;Pdzd7;Pdzd7;Pdzd7,9503;0;0;0;0;7420;0;0;6049;21751;21677;21677;21677;21677;21677;21677,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,226154,ENSMUSG00000035342,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2205,cg04132830,0.0000106,0.00000595,1.785800687,0.075108921,gain,ns,-0.00000668,0.0000101,-0.660388942,0.509494667,neg,ns,-0.006124315,0.002963404,-2.066648699,0.03959737,neg,ns,1.402333654,0.000211374,0.000101911,2.074104016,0.038894847,pos,ns,0.836429536,Nhsl1,Nhsl1_Exon,10,18516094,18516143,18516094,18516095,50,-,CGACCGAAGAAAGTCAAAAGGAGAAAGACTATTACAGGAGTCCCTGACAA,"Exon (Nhsl1-208/Nhsl1, exon 5 of 6)",10,18318985,18531973,212989,1,Nhsl1-209,197109,Nhsl1-209;Nhsl1-203;Nhsl1-206;Nhsl1-201;Nhsl1-208;Nhsl1-202,Nhsl1;Nhsl1;Nhsl1;Nhsl1;Nhsl1;Nhsl1,0;0;108419;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,215819,ENSMUSG00000039835,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24691,cg25657841,0.0000685,0.00000564,12.14932016,4.83E-28,gain,yes,-0.00000632,0.00000957,-0.660252968,0.509581788,neg,ns,0.009241756,0.002804927,3.294829463,0.001098927,pos,ns,2.959031249,-0.000177901,0.0000965,-1.844274212,0.066097209,neg,ns,0.184365903,Neurog2,Neurog2_Promoter,3,127627429,127627478,127627477,127627478,50,-,CGCCAATATAAATAACAAAACAACTCTTGTGGCTGCACTATTCCTACACG,Promoter (5-6kb),3,127633135,127635631,2497,1,Neurog2-201,-5706,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,13,14,11924,ENSMUSG00000027967,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
24914,cg07161315,0.000000464,0.00000105,0.441995521,0.658800628,gain,ns,0.00000118,0.00000178,0.660219434,0.509603276,pos,ns,0.000542101,0.000522821,1.036876395,0.300601576,pos,ns,0.522008746,-0.0000166,0.000018,-0.921247621,0.357637532,neg,ns,0.022962047,Elovl6,Elovl6_fiveUTR,3,129532659,129532708,129532659,129532660,50,-,CGACTCCGAAGATCAGCCCCAATGAACATGTCAGTGTTGACTTTACAAGA,Promoter (<=1kb),3,129532355,129634971,102617,1,Elovl6-205,304,Elovl6-205;Elovl6-202;Elovl6-201;Elovl6-203,Elovl6;Elovl6;Elovl6;Elovl6,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,2,170439,ENSMUSG00000041220,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
1980,cg22956901,0.000120485,0.000027,4.459912747,0.0000115,gain,ns,0.0000303,0.0000459,0.660195365,0.509618698,pos,ns,0.081604228,0.01344572,6.069160131,3.75E-09,pos,ns,8.426108504,-0.002180669,0.000462397,-4.716007943,0.0000036,neg,ns,0.610361393,Tfec,Tfec_Intergenic_downstream,6,16769056,16769105,16769056,16769057,50,-,CGAATGATATTTTCATAGGCATGGCTAGTAATCAATATAGACAAGCTCTG,Distal Intergenic,6,16834692,16835263,572,2,Tfec-204,66207,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,19,23,21426,ENSMUSG00000029553,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26671,cg19215864,0.00000723,0.00000224,3.220784218,0.001414137,gain,ns,-0.00000252,0.00000381,-0.660158232,0.509642493,neg,ns,-0.0000653,0.001116601,-0.058494853,0.95339215,neg,ns,0.020728428,0.0000558,0.0000384,1.453170783,0.147187856,pos,ns,0.945698571,Rere,Rere_Exon,4,150439413,150439462,150439413,150439414,50,+,CGGTGGCATCACAGCCACCACAGCATCTTTCTGAAGCCGGGAGAGGGCCT,"Exon (Rere-202/Rere, exon 4 of 23)",4,150281646,150621966,340321,1,Rere-202,157767,Rere-202;Rere-204,Rere;Rere,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,7,68703,ENSMUSG00000039852,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14639,cg14869215,-0.0000139,0.0000105,-1.324712801,0.186242119,loss,ns,0.0000117,0.0000178,0.660134891,0.50965745,pos,ns,-0.001769667,0.00520589,-0.339935555,0.734135268,neg,ns,0.134223912,-0.000225671,0.00017903,-1.26052179,0.208429139,neg,ns,0.778204051,Slf1,Slf1_Exon,13,77046640,77046689,77046688,77046689,50,-,TTCCTGGACACACACTGTGTTGCCATAGTTACAGGCTTCATGCAAAGGCG,"Exon (Slf1-201/Slf1, exon 20 of 21)",13,77043088,77135473,92386,2,Slf1-201,88784,Slf1-201;Slf1-204,Slf1;Slf1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,105377,ENSMUSG00000021597,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16854,cg12334420,-0.0000151,0.00000825,-1.83575301,0.067351898,loss,ns,-0.00000925,0.000014,-0.660121348,0.509666128,neg,ns,-0.005589224,0.004106023,-1.361225779,0.174430967,neg,ns,0.758376413,0.000228996,0.000141206,1.621714782,0.105881018,pos,ns,0.736024917,Dclk2,Dclk2_threeUTR,3,86793201,86793250,86793249,86793250,50,-,GGGAATGTGGGTACTTACTGACACCCAGGGGTGACTCAGGATTTGTCCCG,3' UTR,3,86786151,86920379,134229,2,Dclk2-202,127129,Dclk2-202;Dclk2-204;Dclk2-201;Dclk2-209;Dclk2-206;Dclk2-203;Dclk2-205;Dclk2-207,Dclk2;Dclk2;Dclk2;Dclk2;Dclk2;Dclk2;Dclk2;Dclk2,0;0;0;0;0;-886;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,2,70762,ENSMUSG00000028078,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26142,cg08700971,-0.000000812,0.00000167,-0.486782517,0.626756445,loss,ns,0.00000187,0.00000283,0.660041857,0.509717068,pos,ns,0.000254299,0.000830443,0.306220559,0.759642275,pos,ns,0.119390874,-0.000000208,0.0000286,-0.007291388,0.994187055,neg,ns,0.966766931,Lmo4,Lmo4_Exon,3,144193975,144194024,144194023,144194024,50,+,CAAAATAAACTGCCATTGATGTAGTGAAACCGATCTCCCGGGACCAGGCG,"Exon (Lmo4-203/Lmo4, exon 4 of 5)",3,144188530,144202396,13867,2,Lmo4-203,8372,Lmo4-203;Lmo4-201;Lmo4-202;Lmo4-207;Lmo4-206;Lmo4-208,Lmo4;Lmo4;Lmo4;Lmo4;Lmo4;Lmo4,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,18,54,16911,ENSMUSG00000028266,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17238,cg01696865,-0.000000758,0.0000165,-0.045940767,0.963387041,loss,ns,0.0000185,0.000028,0.659973081,0.509761144,pos,ns,0.009640911,0.008207735,1.174612944,0.241051091,pos,ns,0.617890899,0.00007,0.000282263,0.248030365,0.804275126,pos,ns,0.715696885,Nog,Nog_threeUTR,11,89300788,89300837,89300836,89300837,50,+,TTGAACTCTATAGCTTCTTCGAGGTCCAAGGAAAACCAAAACACTTTCCG,3' UTR,11,89300638,89302332,1695,2,Nog-201,1495,Nog-201,Nog,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,36,18121,ENSMUSG00000048616,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
26463,cg15660755,-0.00000123,0.00000328,-0.375024793,0.707898471,loss,ns,0.00000368,0.00000557,0.659915687,0.509797926,pos,ns,0.001503748,0.001632372,0.921204654,0.357659924,pos,ns,0.44652972,-0.0000151,0.0000561,-0.269726031,0.787550488,neg,ns,0.918380358,Mtor,Mtor_Exon,4,148530527,148530576,148530527,148530528,50,-,CGGTCCCTTGTGGTCAGCCCTCATGAAGACATGAGAACCTGGCTCAAGTA,"Exon (Mtor-202/Mtor, exon 35 of 58)",4,148448611,148557683,109073,1,Mtor-202,81916,Mtor-202,Mtor,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,5,56717,ENSMUSG00000028991,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20624,cg18725352,-0.000000278,0.00000353,-0.078793345,0.937247833,loss,ns,-0.00000396,0.000006,-0.659844091,0.509843812,neg,ns,-0.001760059,0.001756757,-1.001879754,0.317183057,neg,ns,0.49869002,0.0000543,0.0000604,0.898736844,0.369490379,pos,ns,0.905692923,Magi3,Magi3_Exon,3,104016663,104016712,104016663,104016664,50,-,CGTAGGAGCACAGACCGGAAGGAGCCAAACCTGAAGAGGGAAGAGAAAAA,"Exon (Magi3-201/Magi3, exon 21 of 22)",3,104013259,104220374,207116,2,Magi3-201,203662,Magi3-201;Magi3-202;Magi3-203;Phtf1-207,Magi3;Magi3;Magi3;Phtf1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,3,99470,ENSMUSG00000052539,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27822,cg25769803,0.0000017,0.00000202,0.845637148,0.398407426,gain,ns,0.00000226,0.00000342,0.659841977,0.509845167,pos,ns,0.000861863,0.001003344,0.858990101,0.391009697,pos,ns,0.407812472,-0.0000623,0.0000345,-1.805473152,0.071970705,neg,ns,0.954193829,Esrrg,Esrrg_Intron,1,188151204,188151253,188151252,188151253,50,+,GTCATGATACGCCAGCTATGTTGCTAACAGTCGTAACGAACTGTCAGGCG,"Intron (Esrrg-203/Esrrg, intron 6 of 7)",1,187609029,188214386,605358,1,Esrrg-203,542175,Esrrg-203;Esrrg-201;Esrrg-202,Esrrg;Esrrg;Esrrg,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,60,26381,ENSMUSG00000026610,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13297,cg13954175,-0.00000787,0.00000301,-2.619013006,0.009251962,loss,ns,0.00000337,0.00000511,0.65980113,0.509871347,pos,ns,-0.001695632,0.001496362,-1.13317021,0.258018404,neg,ns,0.588349316,0.000105968,0.0000515,2.0592338,0.040306791,pos,ns,0.935069575,Pebp4,Pebp4_Intron,14,70026675,70026724,70026675,70026676,50,-,CGCTGCGTGGGCGTCAAGTTCAATGCCTTCTTGTCAACACTTGAATGTGT,"Intron (Pebp4-201/Pebp4, intron 4 of 6)",14,69840420,70059918,219499,1,Pebp4-201,186255,Pebp4-201,Pebp4,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,14,14,73523,ENSMUSG00000022085,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10749,cg24270994,0.000022,0.000009,2.440249462,0.015237,gain,ns,0.0000101,0.0000153,0.659761623,0.50989667,pos,ns,-0.002960882,0.0044809,-0.660778426,0.509245159,neg,ns,0.293073091,0.0000943,0.000154098,0.611960383,0.541012531,pos,ns,0.629135745,Thtpa,Thtpa_threeUTR,14,55097722,55097771,55097770,55097771,50,-,AGCAGCCTCCATTGATTTCCGCTCGTGTTTATAGGATTTCCACTTAGCCG,3' UTR,14,55094784,55098986,4203,1,Thtpa-201,2938,Ap1g2-209;Ap1g2-207;Ap1g2-203;Ap1g2-202;Ap1g2-201;Ap1g2-211;Ap1g2-204;Ap1g2-206;Ap1g2-210;Thtpa-201,Ap1g2;Ap1g2;Ap1g2;Ap1g2;Ap1g2;Ap1g2;Ap1g2;Ap1g2;Ap1g2;Thtpa,0;1617;0;0;0;0;0;6739;7120;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,4,105663,ENSMUSG00000045691,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24744,cg03805199,-0.0000291,0.00000718,-4.048598824,0.0000651,loss,ns,-0.00000805,0.0000122,-0.659706242,0.509932167,neg,ns,-0.00835769,0.003573497,-2.33879877,0.019980985,neg,ns,1.699383113,-0.000209677,0.000122892,-1.706184938,0.088975183,neg,ns,0.716346723,Baz2a,Baz2a_threeUTR,10,128127178,128127227,128127226,128127227,50,+,CGGACCCGCAGTGACGGCCAGTAAAGTGGACTTAACTCCCAAGTGTGTCG,3' UTR,10,128091582,128129303,37722,1,Baz2a-209,35596,Baz2a-209;Baz2a-203;Baz2a-208;Baz2a-201;Baz2a-202;Rbms2-202;Rbms2-206,Baz2a;Baz2a;Baz2a;Baz2a;Baz2a;Rbms2;Rbms2,0;0;0;0;0;53070;53070,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,7,116848,ENSMUSG00000040054,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7099,cg21985117,-0.00000495,0.0000114,-0.433356957,0.66505685,loss,ns,0.0000128,0.0000194,0.659683348,0.509946842,pos,ns,0.013971039,0.005680146,2.459626487,0.014453854,pos,ns,1.840016327,-0.000419919,0.00019534,-2.149687237,0.032353507,neg,ns,0.866181295,Zfpm2,Zfpm2_Intron,15,40961318,40961367,40961318,40961319,50,-,CGGAGATCAACAGAATCATTTTCATTAAGAAAATTATTAATGATGGTGGT,"Intron (Zfpm2-201/Zfpm2, intron 5 of 7)",15,40655035,41104592,449558,1,Zfpm2-201,306283,Zfpm2-201;Zfpm2-203,Zfpm2;Zfpm2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,41,22762,ENSMUSG00000022306,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24135,cg19368807,-0.0000211,0.00000532,-3.966654218,0.0000906,loss,ns,-0.00000596,0.00000904,-0.659672344,0.509953896,neg,ns,-0.005455539,0.002647983,-2.060262354,0.040207742,neg,ns,1.395690317,0.000131182,0.0000911,1.440553971,0.150719938,pos,ns,0.884789531,Kdm2b,Kdm2b_Exon,5,122881658,122881707,122881706,122881707,50,-,ACTGGATCTCCACCAGGGGCTGAGGCTGCTGCCTAGAGGGGGCCTCGGCG,"Exon (Kdm2b-202/Kdm2b, exon 17 of 23)",5,122870665,122989099,118435,2,Kdm2b-202,107392,Kdm2b-202;Kdm2b-201;Kdm2b-204;Kdm2b-203;Kdm2b-207;Kdm2b-205;Kdm2b-212;Kdm2b-217;Kdm2b-209;Kdm2b-219;Kdm2b-208;Kdm2b-220,Kdm2b;Kdm2b;Kdm2b;Kdm2b;Kdm2b;Kdm2b;Kdm2b;Kdm2b;Kdm2b;Kdm2b;Kdm2b;Kdm2b,0;0;0;0;0;0;0;0;0;36017;40400;39841,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,6,30841,ENSMUSG00000029475,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1417,cg27702990,0.0000821,0.0000164,5.017190163,0.000000885,gain,yes,-0.0000183,0.0000278,-0.659382358,0.510139794,neg,ns,0.01746246,0.008141851,2.144777538,0.032747631,pos,ns,1.484820116,-0.000741746,0.000279998,-2.649114815,0.008483801,neg,ns,0.255750948,Rpl36-ps3,Rpl36-ps3_Intergenic_upstream,12,12725291,12725340,12725291,12725292,50,-,CGGCATTGTGGGGGCACTATTTACGGATTTAAAGGTTCATTTGCACAATT,Distal Intergenic,12,12912022,12912336,315,1,Rpl36-ps3-201,-186731,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,19,20,100043215,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21152,cg08402704,0.000226196,0.0000099,22.84032738,2.11E-68,gain,yes,-0.0000111,0.0000168,-0.659266536,0.510214052,neg,ns,0.014897464,0.004929015,3.022401805,0.002716937,pos,ns,2.565920459,0.0000599,0.000169508,0.353451737,0.723990048,pos,ns,0.242058926,Gm17304,Gm17304_Exon,5,106574936,106574985,106574936,106574937,50,+,CGAAGCGACGTGGAAACCCTTCCACCAAAATGAGCTGTGATATCCTTTTG,"Exon (Gm29464-201/Gm29464-201, exon 1 of 1)",5,106609098,106609201,104,1,Gm17304-201,-34113,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,35,,NA,mapped to different genes,5,106574318,106574945,628,*,628,82,0.75477707,0.925521208,0.130573248,6.09E-73,CpGisland,TRUE,NA,NRS
8276,cg07646428,-0.000132936,0.0000117,-11.33084756,3.91E-25,loss,yes,0.0000131,0.0000199,0.659231991,0.510236202,pos,ns,-0.006995277,0.00583925,-1.197975373,0.231841721,neg,ns,0.634808409,-0.000314136,0.000200811,-1.564332152,0.118759802,neg,ns,0.845003663,Ebf1,Ebf1_Intron,11,44925981,44926030,44925981,44925982,50,-,CGAAGCGTAGAGAAAGCTATGATGCTTTATAGAAGTAGGCCAAGTGTTTT,"Intron (Ebf1-203/Ebf1, intron 10 of 15)",11,44617317,45004995,387679,1,Ebf1-203,308664,Ebf1-203;Ebf1-202;Ebf1-201;Ebf1-206,Ebf1;Ebf1;Ebf1;Ebf1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,80,13591,ENSMUSG00000057098,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16799,cg09317554,0.000102273,0.0000151,6.783064273,5.97E-11,gain,yes,0.0000169,0.0000256,0.659204985,0.510253518,pos,ns,0.018096943,0.007504302,2.411542306,0.016466251,pos,ns,1.783405269,-0.000456023,0.000258072,-1.767035974,0.078206105,neg,ns,0.078287217,Lrba,Lrba_Exon,3,86546740,86546789,86546788,86546789,50,+,GAGGGCAGCGGCGGCACTGCAGGCAGGAGATGAGCTGCAGCAGGATGCCG,Promoter (<=1kb),3,86546755,86622420,75666,1,Lrba-205,0,Lrba-202;Lrba-204;Lrba-201;Lrba-208;Lrba-203;Lrba-205;Lrba-206;Mab21l2-201;Mab21l2-202,Lrba;Lrba;Lrba;Lrba;Lrba;Lrba;Lrba;Mab21l2;Mab21l2,0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,17,45,80877,ENSMUSG00000028080,mapped to different genes,3,86546680,86547428,749,*,749,59,0.619492657,0.821027794,0.078771696,1.32E-38,CpGisland,TRUE,U3,Pr-B
4151,cg07516103,0.00000348,0.00000661,0.527202351,0.598430153,gain,ns,0.0000074,0.0000112,0.659165831,0.510278623,pos,ns,-0.00042666,0.003288924,-0.129726264,0.896867135,neg,ns,0.04727189,0.0000557,0.000113106,0.492359765,0.622813545,pos,ns,0.914849919,Gm12074,Gm12074_Intergenic_upstream,11,26972782,26972831,26972782,26972783,50,-,CGTGACATTTTTATCATCCGTCTAAGAGAAGAAAATAAATTTGCTAACAG,Distal Intergenic,11,27051697,27051915,219,1,Gm12074-201,-78915,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,10,100042367,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4711,cg13618372,0.0000063,0.00000345,1.828079107,0.068498622,gain,ns,-0.00000386,0.00000586,-0.659068882,0.51034079,neg,ns,-0.003015161,0.001715555,-1.757542487,0.079812395,neg,ns,1.097929658,0.000135635,0.000059,2.298983188,0.022170694,pos,ns,0.93558642,Sptbn1,Sptbn1_Exon,11,30219656,30219705,30219656,30219657,50,+,CGGTTGTTGACATCACTGTACTGCTGCTGGATCTCAATGTTGTCATAGTC,"Exon (Sptbn1-201/Sptbn1, exon 2 of 36)",11,30099395,30268169,168775,2,Sptbn1-201,48464,Sptbn1-201;Sptbn1-202;Sptbn1-204;Sptbn1-208,Sptbn1;Sptbn1;Sptbn1;Sptbn1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,20742,ENSMUSG00000020315,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11143,cg17356422,-0.00000511,0.00000312,-1.640086529,0.102001456,loss,ns,0.00000349,0.00000529,0.659021268,0.510371323,pos,ns,0.00075323,0.00155063,0.48575729,0.627482414,pos,ns,0.202398442,-0.0000277,0.0000533,-0.51929149,0.603928031,neg,ns,0.931638499,Actl7a,Actl7a_Exon,4,56744445,56744494,56744445,56744446,50,+,CGGAGATGTTCTTCAAGCCATCTCTCATCAAGTCCATGCAGCTGGGCCTC,"Exon (Actl7a-201/Actl7a, exon 1 of 1)",4,56743413,56744925,1513,1,Actl7a-201,1032,Actl7a-201;Actl7b-201;Gm26657-201,Actl7a;Actl7b;Gm26657,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,11470,ENSMUSG00000070979,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20118,cg04418091,0.0000462,0.00000749,6.174046836,2.08E-09,gain,yes,0.00000838,0.0000127,0.659010222,0.510378407,pos,ns,0.008448036,0.003726135,2.267238156,0.024064042,pos,ns,1.618631429,-0.000193733,0.000128141,-1.511865774,0.131586726,neg,ns,0.055585024,Atp5g2,Atp5g2_Promoter,15,102672356,102672405,102672356,102672357,50,-,CGCCATTACAGGAATGTAATTTTGCCCGGATGAGGCCCCGAGTTTAATTA,Promoter (<=1kb),15,102665801,102672352,6552,2,Atp5g2-203,-53,Atp5g2-202;Atp5g2-201;Atp5g2-204;Atp5g2-203,Atp5g2;Atp5g2;Atp5g2;Atp5g2,-1229;-4607;-4613;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,10,18,67942,ENSMUSG00000062683,mapped to different genes,15,102672078,102672489,412,*,412,37,0.621359223,0.940117176,0.089805825,1.33E-26,CpGisland,TRUE,U1,Pr-A
6885,cg21538469,-0.0000158,0.0000124,-1.280129934,0.201456526,loss,ns,0.0000138,0.000021,0.659009777,0.510378692,pos,ns,0.017331205,0.006148359,2.818834266,0.00512985,pos,ns,2.289895327,-0.000854304,0.000211442,-4.040380077,0.0000674,neg,ns,0.745346844,Rims2,Rims2_Exon,15,39275405,39275454,39275453,39275454,50,-,TTTAAACAGGTGGTTTCCCTTTAGTGGAATCACTGAACTGGTAAATAACG,"Exon (Rims2-202/Rims2, exon 3 of 27)",15,39198332,39681940,483609,1,Rims2-202,77073,Rims2-202;Rims2-205;Rims2-201,Rims2;Rims2;Rims2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,16,19,116838,ENSMUSG00000037386,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9091,cg04537978,-0.000000457,0.00000229,-0.199860593,0.84172065,loss,ns,0.00000256,0.00000388,0.658962679,0.510408895,pos,ns,0.002971436,0.001137699,2.611794461,0.009445201,pos,ns,2.024788798,-0.0000397,0.0000391,-1.013588085,0.311569785,neg,ns,0.073099507,Slc39a10,Slc39a10_fiveUTR,1,46853455,46853504,46853503,46853504,50,-,GGGGTTTTATAGTTACCTCACACTCGAGTGCCGTGTGCATCTCCTCTCCG,Promoter (<=1kb),1,46807544,46854046,46503,2,Slc39a10-201,542,Slc39a10-201;Slc39a10-204;Slc39a10-203,Slc39a10;Slc39a10;Slc39a10,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,4,227059,ENSMUSG00000025986,conserved gene and region,1,46852697,46854136,1440,*,1440,172,0.693055556,1.006927505,0.119444444,1.33E-144,CpGisland,TRUE,U1,Pr-A
10721,cg12250639,-0.00000117,0.00000241,-0.485312665,0.627797367,loss,ns,-0.0000027,0.0000041,-0.658938117,0.510424647,neg,ns,-0.002115572,0.0012003,-1.762535133,0.078964316,neg,ns,1.102569122,-0.00000295,0.0000413,-0.07142449,0.943105975,neg,ns,0.956289138,Zfp462,Zfp462_Exon,4,55011900,55011949,55011900,55011901,50,-,CGATGGGCATTTCTAGATGGCTTGATAGAAGCTGGCTACCACTGCGAGTG,"Exon (Zfp462-203/Zfp462, exon 3 of 13)",4,54947976,55083563,135588,1,Zfp462-203,63924,Zfp462-204;Zfp462-203;Zfp462-201;Zfp462-202,Zfp462;Zfp462;Zfp462;Zfp462,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,23,242466,ENSMUSG00000060206,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10458,cg07601683,-0.00000283,0.00000357,-0.79407199,0.427760953,loss,ns,-0.00000399,0.00000606,-0.658656128,0.510605506,neg,ns,-0.001450303,0.00177579,-0.816708928,0.414721957,neg,ns,0.382242971,0.00000183,0.0000611,0.029886358,0.976176917,pos,ns,0.929236155,Gm5449,Gm5449_Intergenic_downstream,13,53642883,53642932,53642883,53642884,50,-,CGCCAGGGCTGTTTCATTATTTCATCAAAGTTCATTATGCTGGGGAGGAG,Distal Intergenic,13,53525703,53526059,357,1,Gm5449-201,117229,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,2,432760,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15366,cg24966733,-0.0000353,0.0000127,-2.785315549,0.005676683,loss,ns,0.0000142,0.0000215,0.65864732,0.510611155,pos,ns,0.001703435,0.006299071,0.270426414,0.787012172,pos,ns,0.104018551,-0.00039713,0.000216625,-1.833264099,0.067722068,neg,ns,0.753938105,Gm46388,Gm46388_Intergenic_downstream,13,80515209,80515258,80515257,80515258,50,+,TTTGTAAAATGACCCAGAGCAAAAACAAAATAAATGACCTAAAACATCCG,Distal Intergenic,13,80493009,80493484,476,1,Gm46388-201,22200,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,11,108168047,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8614,cg26304840,-0.0000036,0.00000182,-1.979656098,0.048626427,loss,ns,-0.00000203,0.00000309,-0.658548289,0.510674679,neg,ns,-0.002500669,0.000903902,-2.766526354,0.006005828,neg,ns,2.221427142,0.0000864,0.0000311,2.779259305,0.005780945,pos,ns,0.940630368,Btrc,Btrc_Exon,19,45446783,45446832,45446783,45446784,50,-,CGCTCAGGGGCTTTGTGAGGAGGAGATGCTCAGCTGTTGAGCAGCAGACA,"Exon (Btrc-208/Btrc, exon 1 of 1)",19,45363734,45507736,144003,1,Btrc-204,83049,Btrc-204;Btrc-201;Btrc-210;Btrc-202;Btrc-203;Btrc-208;Btrc-205;Btrc-209;Gm6807-201,Btrc;Btrc;Btrc;Btrc;Btrc;Btrc;Btrc;Btrc;Gm6807,0;0;0;0;0;0;0;0;4363,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,30,98,12234,ENSMUSG00000025217,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14245,cg12186652,0.000041,0.0000058,7.075227839,9.98E-12,gain,yes,-0.00000649,0.00000985,-0.658489362,0.51071248,neg,ns,0.002465757,0.002885883,0.854420201,0.393532001,pos,ns,0.405019946,0.000243576,0.0000992,2.454281485,0.014666235,pos,ns,0.174150825,Fev,Fev_Promoter,1,74885856,74885905,74885904,74885905,50,-,GCTGCGTTATCTGCATCTTCACTTTTAAATTTCCGCTTCCCTCCCTCTCG,Promoter (<=1kb),1,74881509,74885419,3911,2,Fev-201,-486,Cryba2-201;Cryba2-202;Fev-201;Fev-202;Fev-203,Cryba2;Cryba2;Fev;Fev;Fev,7238;6987;0;0;-1248,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,4,260298,ENSMUSG00000055197,mapped to different genes,1,74885889,74885971,83,*,83,10,0.710843374,1.162464986,0.120481928,9.52E-09,CpGisland,TRUE,U3,Pr-B
10120,cg00082691,0.000163135,0.0000164,9.947190425,2.05E-20,gain,yes,-0.0000183,0.0000279,-0.65837608,0.510785153,neg,ns,0.030041594,0.008162509,3.680436146,0.000274517,pos,ns,3.561430899,-0.000777105,0.000280708,-2.768376313,0.00597267,neg,ns,0.445367856,Gm28308,Gm28308_Intron,6,52194862,52194911,52194910,52194911,50,-,TATTTGTTAGACGCACTGACCTGAAGTTCACCTCGGCCTTGGACTTTGCG,"Intron (Hoxaas3-202/Hoxaas3-202, intron 1 of 2)",6,52163359,52213339,49981,2,Gm28308-201,18428,Gm28308-201;Hoxa3-201;Hoxa3-203;Hoxa4-201,Gm28308;Hoxa3;Hoxa3;Hoxa4,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,46,103,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
11753,cg23692999,-0.0000456,0.000008,-5.700158316,2.79E-08,loss,yes,0.00000895,0.0000136,0.658365287,0.510792077,pos,ns,-0.007479976,0.003981873,-1.878506712,0.0612502,neg,ns,1.212892491,0.000133355,0.000136936,0.973848133,0.330891228,pos,ns,0.862575911,Abi2,Abi2_Exon,1,60447352,60447401,60447352,60447353,50,+,CGCAGCAGAGCCCTGTGAGGACAGCTTCTGTGAATCAAAGAAATCGAACT,"Exon (Abi2-201/Abi2, exon 5 of 9)",1,60409619,60481158,71540,1,Abi2-201,37733,Abi2-201;Abi2-206;Abi2-207;Abi2-210;Abi2-212;Abi2-208;Abi2-205;Abi2-202;Abi2-204;Abi2-203;Abi2-211,Abi2;Abi2;Abi2;Abi2;Abi2;Abi2;Abi2;Abi2;Abi2;Abi2;Abi2,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,9,329165,ENSMUSG00000026782,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14614,cg18961151,0.00000188,0.00000184,1.019237156,0.308885159,gain,ns,-0.00000206,0.00000313,-0.658329556,0.510815,neg,ns,-0.001092833,0.000917038,-1.191697972,0.234291218,neg,ns,0.63024399,0.000029,0.0000315,0.918262507,0.359195338,pos,ns,0.053759097,Skor2,Skor2_Promoter,18,76856066,76856115,76856114,76856115,50,-,AATGTGGAGTGTCAGGGAGACGGTGACGTCACCCTGCCCGCTGGGTGGCG,Promoter (<=1kb),18,76856405,76900342,43938,1,Skor2-201,-339,Skor2-201,Skor2,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,4,7,664805,ENSMUSG00000091519,conserved gene and region,18,76856086,76856203,118,*,118,13,0.661016949,1.009210526,0.110169492,8.62E-11,CpGisland,TRUE,U13,Hc-P
11570,cg14019542,0.000000525,0.000000696,0.754265515,0.451262366,gain,ns,0.000000778,0.00000118,0.658286839,0.510842406,pos,ns,0.000401113,0.00034638,1.1580149,0.247749338,pos,ns,0.605987498,-0.0000122,0.0000119,-1.020594259,0.308242515,neg,ns,0.978195193,Pkp4,Pkp4_Exon,2,59214974,59215023,59215022,59215023,50,+,GAGCCGCTCCAGGTGCCAGTCAGAATCGGAACATGCAGGATACTTGTGCG,"Exon (Pkp4-204/Pkp4, exon 3 of 3)",2,59160850,59355204,194355,1,Pkp4-210,54124,Pkp4-210;Pkp4-202;Pkp4-211;Pkp4-205;Pkp4-201;Pkp4-212;Pkp4-213;Pkp4-204;Pkp4-214;Pkp4-208,Pkp4;Pkp4;Pkp4;Pkp4;Pkp4;Pkp4;Pkp4;Pkp4;Pkp4;Pkp4,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,7,227937,ENSMUSG00000026991,conserved gene but different region,2,59215000,59215119,120,*,120,10,0.575,1.025641026,0.083333333,0.000000362,CpGisland,TRUE,U11,Tr-P
16947,cg12132499,0.00000898,0.00000385,2.334054427,0.020231544,gain,ns,-0.0000043,0.00000654,-0.658125866,0.51094569,neg,ns,-0.002334928,0.001915289,-1.219099269,0.22373333,neg,ns,0.650269313,0.0000634,0.0000659,0.963269569,0.33616305,pos,ns,0.836093523,Septin4,Septin4_Exon,11,87588963,87589012,87589011,87589012,50,-,CCCAGGCTCCGGCCATTGGATGTTGAATTCATGAAGGCCCTGCATCAGCG,"Exon (Septin4-220/Septin4, exon 9 of 14)",11,87566653,87590539,23887,1,Septin4-220,22310,Mtmr4-202;Mtmr4-201;Mtmr4-206;Mtmr4-204;Mtmr4-203;Septin4-220;Septin4-206;Septin4-217;Septin4-207;Septin4-211;Septin4-209;Septin4-213;Septin4-215;Septin4-205;Septin4-201;Septin4-203;Septin4-204;Septin4-216;Septin4-214;Septin4-212;Septin4-219;Septin4-210;Septin4-218,Mtmr4;Mtmr4;Mtmr4;Mtmr4;Mtmr4;Septin4;Septin4;Septin4;Septin4;Septin4;Septin4;Septin4;Septin4;Septin4;Septin4;Septin4;Septin4;Septin4;Septin4;Septin4;Septin4;Septin4;Septin4,0;0;-3214;-3452;0;0;0;0;0;0;10507;0;10479;0;0;0;0;7894;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17389,cg13275239,-0.00000224,0.00000295,-0.758382595,0.448798148,loss,ns,0.0000033,0.00000501,0.657974519,0.511042807,pos,ns,0.000492439,0.001467307,0.335607467,0.737393906,pos,ns,0.132300456,0.00000172,0.0000505,0.034125483,0.97279905,pos,ns,0.927155803,Ubap2l,Ubap2l_Exon,3,90009158,90009207,90009206,90009207,50,-,CCCTGTATAGTATGGCAGGCTGGTGTAACTGTAGCCAGGAGGCAGCGCCG,"Exon (Ubap2l-215/Ubap2l, exon 23 of 27)",3,90000140,90052455,52316,2,Ubap2l-215,43248,Ubap2l-215;Ubap2l-201;Ubap2l-202;Ubap2l-208;Ubap2l-203;Ubap2l-211;Ubap2l-204;Ubap2l-220;Ubap2l-207,Ubap2l;Ubap2l;Ubap2l;Ubap2l;Ubap2l;Ubap2l;Ubap2l;Ubap2l;Ubap2l,0;0;0;0;0;0;0;0;7086,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,15,74383,ENSMUSG00000042520,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24021,cg16597508,-0.00000261,0.00000106,-2.448498742,0.014899119,loss,ns,0.00000119,0.00000181,0.657912117,0.511082852,pos,ns,0.001891184,0.000529547,3.571323202,0.000411579,pos,ns,3.385546672,-0.0000494,0.0000182,-2.715378554,0.006991154,neg,ns,0.033828018,Ctdspl2,Ctdspl2_Promoter,2,121956851,121956900,121956851,121956852,50,+,CGGCCTGCGTTGTGATTTCTGGGGTTAGATTTCACTTTGCTACCCACCCC,Promoter (<=1kb),2,121956001,122013642,57642,1,Ctdspl2-201,850,Ctdspl2-201;Ctdspl2-204;Ctdspl2-208;Ctdspl2-209;Ctdspl2-207;Ctdspl2-206;Ctdspl2-203;Mageb3-201,Ctdspl2;Ctdspl2;Ctdspl2;Ctdspl2;Ctdspl2;Ctdspl2;Ctdspl2;Mageb3,0;0;0;0;0;0;0;-759,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,1,8,329506,ENSMUSG00000033411,conserved gene but different region,2,121956542,121956852,311,*,311,22,0.610932476,0.768418688,0.07073955,8.99E-14,CpGisland,TRUE,U1,Pr-A
23410,cg20416352,0.0000836,0.0000142,5.870819291,1.12E-08,gain,yes,-0.0000159,0.0000242,-0.657861336,0.51111544,neg,ns,0.040944577,0.007087302,5.777173605,1.85E-08,pos,ns,7.733236695,-0.000920162,0.000243732,-3.775307128,0.000191508,neg,ns,0.432672415,Sp4,Sp4_Exon,12,118298704,118298753,118298704,118298705,50,+,CGCTCACTGTCTGAAGGTTAGGCACTGATGCAAGCTGGGCAGTATTCAAA,"Exon (Sp4-201/Sp4, exon 3 of 6)",12,118234933,118301370,66438,2,Sp4-201,2617,Sp4-201;Sp4-203;Sp4-202,Sp4;Sp4;Sp4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,14,20688,ENSMUSG00000025323,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
180,cg13162262,-0.00000422,0.00000168,-2.516802507,0.012346913,loss,ns,0.00000187,0.00000285,0.657854286,0.511119965,pos,ns,-0.000123525,0.000833883,-0.148131772,0.882335081,neg,ns,0.054366453,0.000031,0.0000287,1.082150501,0.280026703,pos,ns,0.057381288,Casd1,Casd1_fiveUTR,6,4601138,4601187,4601138,4601139,50,-,CGCCGCGCACTGTTGTCATGGAGGAACCAAGATGGCGGCTCTGGCCTACA,Promoter (<=1kb),6,4601146,4608748,7603,1,Casd1-203,0,Casd1-201;Casd1-204;Casd1-203;Casd1-202,Casd1;Casd1;Casd1;Casd1,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,6,213819,ENSMUSG00000015189,conserved gene and region,6,4600919,4601684,766,*,766,100,0.791122715,0.834786399,0.130548303,8.09E-89,CpGisland,TRUE,U1,Pr-A
8096,cg00370841,0.0000751,0.0000117,6.406216637,5.53E-10,gain,yes,-0.0000131,0.0000199,-0.657793148,0.511159203,neg,ns,0.025667246,0.005835241,4.398660631,0.000015,pos,ns,4.824087543,-0.00065097,0.000200673,-3.243927944,0.001307594,neg,ns,0.48739109,Ebf1,Ebf1_Intron,11,44741156,44741205,44741204,44741205,50,+,TTGATTTTTTAGGTTTCTGCCGTCATCGGTTTCCAGCCTCACAGCGGCCG,"Intron (Ebf1-203/Ebf1, intron 6 of 15)",11,44617317,45004995,387679,1,Ebf1-203,123839,Ebf1-203;Ebf1-202;Ebf1-201,Ebf1;Ebf1;Ebf1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,80,13591,ENSMUSG00000057098,conserved gene and region,11,44741176,44741251,76,*,76,9,0.723684211,0.904761905,0.118421053,8.12E-08,CpGisland,TRUE,NA,NRS
3733,cg10154104,0.00000343,0.000000557,6.161510602,2.24E-09,gain,yes,-0.000000623,0.000000947,-0.657607498,0.511278359,neg,ns,0.000211841,0.000277357,0.763785786,0.445575821,pos,ns,0.351078384,0.0000123,0.00000954,1.293260667,0.1968838,pos,ns,0.011648402,Pou2f2,Pou2f2_Promoter,7,25179898,25179947,25179898,25179899,50,+,CGAGCCCAGGCGCGCGCCATCCCCGGCTCCCACCTTGTCCCCATGGCAAC,Promoter (<=1kb),7,25120618,25179726,59109,2,Pou2f2-208,-172,Pou2f2-208,Pou2f2,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,11,29,18987,ENSMUSG00000008496,conserved gene but different region,7,25179573,25180057,485,*,485,61,0.771134021,0.853947179,0.125773196,3.02E-53,CpGisland,TRUE,U3,Pr-B
2117,cg13570084,-0.000000616,0.000000849,-0.72530922,0.468809503,loss,ns,0.000000948,0.00000144,0.657358101,0.511438452,pos,ns,0.001198179,0.000422717,2.834471155,0.004891494,pos,ns,2.310558518,-0.0000406,0.0000145,-2.789912958,0.005598678,neg,ns,0.978200076,Skida1,Skida1_Promoter,2,18051858,18051907,18051858,18051859,50,+,CGATCAATAGCTACCAACATTTATGGCTTAGATTATTAATGTGAAAGCTG,Promoter (2-3kb),2,18044083,18049051,4969,2,Skida1-202,-2807,Mllt10-201;Skida1-202;Skida1-201;Skida1-203;Skida1-204,Mllt10;Skida1;Skida1;Skida1;Skida1,0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,12,31,72668,ENSMUSG00000054074,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1126,cg07160581,6.97E-08,0.00000145,0.04821319,0.961577385,gain,ns,0.00000161,0.00000246,0.657346505,0.511445897,pos,ns,0.000881849,0.000719286,1.226005724,0.221127026,pos,ns,0.655358175,-0.0000594,0.0000247,-2.401114352,0.016933992,neg,ns,0.961726312,Ryr2,Ryr2_Exon,13,11705697,11705746,11705745,11705746,50,-,CATCATACTGACATAATTTGACTCCATGTAGTCTGGAGGCAAAGCTCCCG,"Exon (Ryr2-201/Ryr2, exon 53 of 105)",13,11553102,12106945,553844,2,Ryr2-201,401199,Ryr2-201;Ryr2-202,Ryr2;Ryr2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,5,20191,ENSMUSG00000021313,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19700,cg04050843,0.00011349,0.00000734,15.46404823,2.21E-40,gain,yes,-0.00000819,0.0000125,-0.65710063,0.511603757,neg,ns,0.008369251,0.00365268,2.291263209,0.022618736,pos,ns,1.64553167,0.0000888,0.000125615,0.707286506,0.479919801,pos,ns,0.241048171,Kcnh4,Kcnh4_Exon,11,100759551,100759600,100759551,100759552,50,-,CGATGGTGTCCAGGAAGGTGTTTTGCGGGGCCAGCAACCCCTTCATGACC,Promoter (<=1kb),11,100740376,100759740,19365,2,Kcnh4-201,140,Hcrt-202;Hcrt-201;Kcnh4-201;Kcnh4-202,Hcrt;Hcrt;Kcnh4;Kcnh4,3328;3331;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,380728,ENSMUSG00000035355,conserved gene and region,11,100759517,100759733,217,*,217,29,0.737327189,0.983434912,0.133640553,2.11E-26,CpGisland,TRUE,U3,Pr-B
10665,cg04927884,0.000138089,0.0000159,8.70228076,1.96E-16,gain,yes,-0.0000177,0.000027,-0.656944035,0.511704309,neg,ns,0.013809866,0.00789776,1.748580125,0.081353447,pos,ns,1.089624043,-0.00027771,0.000271603,-1.022484453,0.307348912,neg,ns,0.225297673,Zfp608,Zfp608_Intron,18,54902279,54902328,54902327,54902328,50,+,TTTGTCTGCAGTGAAAGGCTTTTGTTATTGCTTTTCCCCTAAGGGTTTCG,"Intron (Zfp608-201/Zfp608, intron 3 of 9)",18,54888048,54990166,102119,2,Zfp608-201,87838,Zfp608-201;Zfp608-204;Zfp608-203,Zfp608;Zfp608;Zfp608,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,32,269023,ENSMUSG00000052713,conserved gene and region,18,54902327,54902405,79,*,79,10,0.658227848,1.175595238,0.126582279,5.68E-09,CpGisland,TRUE,U6,En-Sp
17745,cg11667285,-0.000000127,0.000000909,-0.139869138,0.888854215,loss,ns,0.00000101,0.00000154,0.656942038,0.511705591,pos,ns,0.000741405,0.000452301,1.639184886,0.102189165,pos,ns,0.990595148,-0.0000253,0.0000156,-1.625502517,0.105071683,neg,ns,0.972865364,Fto,Fto_Intron,8,91617559,91617608,91617607,91617608,50,-,AATGAGTTTTCTGCCTGGTTGCATCTTAGCTAATAAGGAATTCCTTAGCG,"Intron (Fto-201/Fto, intron 8 of 8)",8,91313525,91668439,354915,1,Fto-201,304034,Fto-201;Fto-205,Fto;Fto,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,26,26383,ENSMUSG00000055932,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5141,cg01663388,-0.000106365,0.0000154,-6.919854433,2.60E-11,loss,yes,0.0000172,0.0000261,0.656866349,0.511754196,pos,ns,-0.015790547,0.007650335,-2.0640334,0.039846364,neg,ns,1.399611301,0.00029311,0.000263094,1.114086929,0.266104921,pos,ns,0.530160055,Fli1,Fli1_Exon,9,32516754,32516803,32516802,32516803,50,-,CTTCCAGGTTCTGAGATCAGAAACGGAAGTTTCAAAATACCGAAAGTTCG,"Exon (Gm27201-201/Gm27201-201, exon 3 of 3)",9,32422204,32541595,119392,2,Fli1-201,24792,Fli1-201;Fli1-202,Fli1;Fli1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,15,14247,ENSMUSG00000016087,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
214,cg06544379,8.12E-08,0.000000475,0.1708689,0.864438322,gain,ns,0.00000053,0.000000807,0.656851067,0.51176401,pos,ns,-0.0000295,0.000236397,-0.12459409,0.90092566,neg,ns,0.045311043,0.00000186,0.00000813,0.228679762,0.819268606,pos,ns,0.988310112,Gm21992,Gm21992_Exon,19,4787959,4788008,4787959,4787960,50,-,CGCACCGATAGCAGCCGCTCTGGTCTCCCATCCCGGGCGCAGTCCTAAGC,"Exon (Rbm4-206/Rbm4, exon 3 of 4)",19,4742913,4811612,68700,2,Gm21992-203,23604,Gm21992-203;Gm21992-206;Gm21992-204;Gm21992-201;Gm21992-205;Gm21992-202;Rbm4-206;Rbm4-203;Rbm4-207;Rbm4-201;Rbm4-204;Rbm4-202;Rbm4-205,Gm21992;Gm21992;Gm21992;Gm21992;Gm21992;Gm21992;Rbm4;Rbm4;Rbm4;Rbm4;Rbm4;Rbm4;Rbm4,0;0;0;0;0;0;0;0;0;0;0;0;5875,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,27,48,102902673,ENSMUSG00000096370,mapped to different genes,19,4787858,4788058,201,*,201,17,0.577114428,1.040816327,0.084577114,4.91E-12,CpGisland,TRUE,U10,Tr-S
14136,cg24158964,0.0000287,0.00000286,10.03878825,1.02E-20,gain,yes,-0.00000319,0.00000486,-0.656687139,0.511869289,neg,ns,0.00505776,0.001422867,3.554626037,0.000437514,pos,ns,3.359008151,-0.0000976,0.0000489,-1.993592943,0.047072549,neg,ns,0.049711163,Hoxd10,Hoxd10_Exon,2,74694251,74694300,74694251,74694252,50,+,CGTTAACCTCACCGACAGGCAGGTCAAGATTTGGTTTCAAAACCGCCGAA,"Exon (Hoxd10-201/Hoxd10, exon 2 of 2)",2,74691924,74695105,3182,1,Hoxd10-201,2327,Hoxd10-201;Hoxd9-201,Hoxd10;Hoxd9,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,21,24,15430,ENSMUSG00000050368,conserved gene and region,2,74694222,74694348,127,*,127,12,0.519685039,1.400735294,0.094488189,3.59E-09,CpGisland,TRUE,U13,Hc-P
18560,cg07325638,-0.0000133,0.00000459,-2.884982477,0.004188706,loss,ns,-0.00000512,0.0000078,-0.65663613,0.511902051,neg,ns,-0.005574023,0.002286544,-2.437749678,0.015340718,neg,ns,1.8141543,0.0000594,0.0000786,0.75549937,0.450523054,pos,ns,0.087354639,Arid2,Arid2_Intron,15,96288772,96288821,96288772,96288773,50,-,CGACAGAGGGACTTGCGATTGGTTATTGTCCGGGCTTCAAAAACAAAACA,"Intron (Arid2-202/Arid2, intron 2 of 4)",15,96287518,96352038,64521,1,Arid2-202,1254,Arid2-202;Arid2-201,Arid2;Arid2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,9,77044,ENSMUSG00000033237,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
3516,cg08871254,0.0000787,0.0000145,5.443679072,0.000000106,gain,yes,-0.0000161,0.0000246,-0.656413114,0.5120453,neg,ns,0.026058467,0.007193923,3.622289108,0.000341059,pos,ns,3.467170516,-0.00089654,0.000247398,-3.623871849,0.000339063,neg,ns,0.26406983,Bcl11a,Bcl11a_Intergenic_downstream,11,24286816,24286865,24286864,24286865,50,-,GGCTGGGCTGGCAGCCTGAACCTTTGCAAATCAATTTGTCTGTGAAGGCG,Distal Intergenic,11,24142379,24163291,20913,1,Bcl11a-206,144486,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,15,98,14025,ENSMUSG00000000861,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2053,cg08750576,-0.000000517,0.000002,-0.257927706,0.796633844,loss,ns,0.00000223,0.0000034,0.656338998,0.512092912,pos,ns,0.002308867,0.00099683,2.316208386,0.021198868,pos,ns,1.673687328,-0.0000781,0.0000343,-2.279271615,0.023330369,neg,ns,0.088787572,Cited2,Cited2_fiveUTR,10,17723939,17723988,17723987,17723988,50,-,ACTGGAAATGGCAGACCATATGATGGCCATGAACCACGGGCGCTTCCCCG,Promoter (<=1kb),10,17723218,17725674,2457,1,Cited2-201,721,Cited2-201;Cited2-203;Cited2-202,Cited2;Cited2;Cited2,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,11,17684,ENSMUSG00000039910,conserved gene but different region,10,17723975,17724278,304,*,304,25,0.700657895,0.681003584,0.082236842,3.54E-17,CpGisland,TRUE,U1,Pr-A
18765,cg14884696,0.0000674,0.0000122,5.518006767,7.25E-08,gain,yes,-0.0000136,0.0000207,-0.656304974,0.512114769,neg,ns,0.037878043,0.006074806,6.235268043,1.47E-09,pos,ns,8.831531375,-0.000372196,0.000208912,-1.781590974,0.075794847,neg,ns,0.876732307,Npepps,Npepps_threeUTR,11,97240913,97240962,97240961,97240962,50,-,TAAAAATATTAAATACCATAGTAACAAGATTTCCAAACCATTGATGGGCG,3' UTR,11,97205842,97280486,74645,2,Npepps-215,39524,Npepps-215;Npepps-219;Npepps-201;Npepps-214;Npepps-213;Npepps-208;Npepps-211;Npepps-209;Npepps-205;Npepps-216;Npepps-210,Npepps;Npepps;Npepps;Npepps;Npepps;Npepps;Npepps;Npepps;Npepps;Npepps;Npepps,0;0;0;0;0;0;0;0;0;0;39508,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,5,19155,ENSMUSG00000001441,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13358,cg15051314,0.00000106,0.00000178,0.592310036,0.554074763,gain,ns,-0.00000199,0.00000303,-0.656234748,0.512159885,neg,ns,-0.000634983,0.000886899,-0.715958531,0.474555907,neg,ns,0.323712616,0.00000202,0.0000305,0.066097913,0.947342479,pos,ns,0.956247027,Upf1,Upf1_Exon,8,70335243,70335292,70335291,70335292,50,-,TTGGTGTGCAGGGAGCCGCTGAACTGCATGTACTGCACCAGGTAGGAGCG,"Exon (Upf1-202/Upf1, exon 17 of 24)",8,70331525,70353211,21687,2,Upf1-202,17919,Cers1-203;Cers1-202;Gdf1-201;Upf1-202;Upf1-201,Cers1;Cers1;Gdf1;Upf1;Upf1,19468;19456;5426;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,19704,ENSMUSG00000058301,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22025,cg14206377,-0.0000299,0.00000807,-3.698844505,0.000256139,loss,ns,0.000009,0.0000137,0.656228917,0.512163631,pos,ns,-0.003690474,0.004018796,-0.918303514,0.35917391,neg,ns,0.444695218,-0.000190482,0.000138206,-1.378247904,0.16912067,neg,ns,0.888014563,Elavl4,Elavl4_threeUTR,4,110205967,110206016,110205967,110205968,50,+,CGAATGGTCATCTTAAAAAGATCCACCTTCAAGGAAGGTAGTAAAGTTAG,3' UTR,4,110203722,110287527,83806,2,Elavl4-204,81511,Elavl4-204;Elavl4-201;Elavl4-203;Elavl4-202;Elavl4-205;Elavl4-206;Elavl4-207;Elavl4-211,Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,8,36,15572,ENSMUSG00000028546,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7617,cg25423501,0.00000048,0.00000171,0.281605905,0.778433599,gain,ns,-0.0000019,0.0000029,-0.656048604,0.512279481,neg,ns,-0.000901526,0.000848812,-1.062104151,0.289015111,neg,ns,0.53907945,0.0000158,0.0000292,0.5403822,0.589321498,pos,ns,0.066133687,Bend3,Bend3_fiveUTR,10,43479102,43479151,43479150,43479151,50,-,GGTTCCACTGCAGCGGGGGCTCCTGTGTCCTTGTGCGGAAATGACACACG,Promoter (<=1kb),10,43479140,43515396,36257,1,Bend3-201,0,Bend3-202;Bend3-201,Bend3;Bend3,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,3,331623,ENSMUSG00000038214,conserved gene but different region,10,43478338,43480095,1758,*,1758,238,0.742889647,0.982341962,0.135381115,6.56E-215,CpGisland,TRUE,U1,Pr-A
3500,cg20786718,-0.0000754,0.0000149,-5.064658856,0.000000704,loss,yes,0.0000166,0.0000253,0.656023352,0.512295706,pos,ns,-0.016191031,0.007405593,-2.186324578,0.029539351,neg,ns,1.529599055,0.000506682,0.000254678,1.989500921,0.047524373,pos,ns,0.81645812,Bcl11a,Bcl11a_Intergenic_downstream,11,24184744,24184793,24184792,24184793,50,+,GGAATATATCAGAAGTTGGCCTATGCCTTATGCACAATGTACTTAAAACG,Distal Intergenic,11,24142379,24163291,20913,1,Bcl11a-206,42365,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,15,98,14025,ENSMUSG00000000861,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26896,cg08580535,-0.0000149,0.00000643,-2.311487824,0.021461416,loss,ns,-0.00000717,0.0000109,-0.656000512,0.512310382,neg,ns,-0.004588556,0.003202031,-1.433014142,0.152861495,neg,ns,0.815701898,-0.000034,0.000110118,-0.30918463,0.757388786,neg,ns,0.865131212,Cacna1e,Cacna1e_Exon,1,154477795,154477844,154477795,154477796,50,+,CGGGCTGACCTCCTTGGCCTTCTGCAGTGCATGTTTCTGGTTGAAGGCCT,"Exon (Cacna1e-203/Cacna1e, exon 18 of 47)",1,154390731,154726356,335626,2,Cacna1e-203,248512,Cacna1e-203;Cacna1e-201;Cacna1e-207;Cacna1e-205;Cacna1e-206,Cacna1e;Cacna1e;Cacna1e;Cacna1e;Cacna1e,0;0;0;-1099;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,19,12290,ENSMUSG00000004110,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5221,cg20619165,0.0000913,0.0000192,4.749595633,0.00000312,gain,ns,0.0000214,0.0000327,0.65586499,0.512397466,pos,ns,0.018573801,0.00957125,1.940582627,0.053215319,pos,ns,1.273963328,-0.000484361,0.000329154,-1.47153018,0.142162184,neg,ns,0.340064269,Gm12112,Gm12112_Intron,11,32925887,32925936,32925887,32925888,50,-,CGCCAGGAGCAGCCCTGGGCCGCAGCTTTATTTTATAAACACATTTAGAC,"Intron (Gm12111-201/Gm12111-201, intron 1 of 2)",11,32910373,32910603,231,1,Gm12112-201,15563,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,,NA,mapped to different genes,11,32925882,32926151,270,*,270,19,0.618518519,0.743478261,0.07037037,6.30E-12,CpGisland,TRUE,NA,NRS
21791,cg15713129,0.00000145,0.00000717,0.201474906,0.840459386,gain,ns,0.00000799,0.0000122,0.655727097,0.51248608,pos,ns,0.005543991,0.003570201,1.552851172,0.121478979,pos,ns,0.915498868,-0.000296906,0.000122779,-2.418214939,0.01617297,neg,ns,0.720618368,Lmo1,Lmo1_Intron,7,109166033,109166082,109166081,109166082,50,-,TCCCTGTAATTGGGCATCAGTAGTTAATGCAGTATTGACTGCATTACACG,"Intron (Lmo1-201/Lmo1, intron 1 of 3)",7,109138572,109170519,31948,2,Lmo1-201,4437,Lmo1-201;Lmo1-202;Lmo1-203,Lmo1;Lmo1;Lmo1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,66,109594,ENSMUSG00000036111,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26876,cg11994228,-0.0000112,0.00000915,-1.223101366,0.222220373,loss,ns,-0.0000102,0.0000156,-0.655643824,0.512539599,neg,ns,-0.0090226,0.004555891,-1.980424798,0.048539607,neg,ns,1.31390374,0.0000214,0.000156677,0.136544264,0.891479666,pos,ns,0.791727667,Cacna1e,Cacna1e_Exon,1,154417950,154417999,154417998,154417999,50,-,CTTGCAAGCCACCCTGTAGGGGCAGTTCTCTCCCAGGCCCAGAGGAGGCG,"Exon (Cacna1e-208/Cacna1e, exon 2 of 3)",1,154390731,154726356,335626,2,Cacna1e-203,308357,Cacna1e-203;Cacna1e-201;Cacna1e-207;Cacna1e-208,Cacna1e;Cacna1e;Cacna1e;Cacna1e,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,19,12290,ENSMUSG00000004110,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21175,cg25285936,-0.000039,0.00000907,-4.296793116,0.0000232,loss,ns,0.0000101,0.0000154,0.655541571,0.512605319,pos,ns,-0.004603787,0.004514118,-1.019864218,0.308588109,neg,ns,0.510620813,0.000171614,0.00015524,1.105477276,0.269810044,pos,ns,0.747858565,Ppfia2,Ppfia2_Intron,10,106632808,106632857,106632808,106632809,50,+,CGGATATGAACACCGTTTCTGGCTCCCCTAAAGTGCATCCTCCTAATGGG,"Intron (Ppfia2-201/Ppfia2, intron 3 of 31)",10,106470339,106932492,462154,1,Ppfia2-201,162469,Ppfia2-201;Ppfia2-202;Ppfia2-203,Ppfia2;Ppfia2;Ppfia2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,9,327814,ENSMUSG00000053825,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20985,cg13954332,0.0000024,0.00000305,0.787186272,0.431774243,gain,ns,-0.0000034,0.00000518,-0.655522751,0.512617416,neg,ns,0.001248488,0.001518613,0.822124194,0.411638093,pos,ns,0.385484442,-0.0000462,0.0000522,-0.884242617,0.377250533,neg,ns,0.943825554,Tanc2,Tanc2_Exon,11,105914008,105914057,105914056,105914057,50,+,CCTACAACTTTTTGTTTTCTCCTTTCTTTGAAGGTTGTCAGACGTTACCG,"Exon (Tanc2-204/Tanc2, exon 8 of 12)",11,105589991,105929304,339314,1,Tanc2-202,324017,Tanc2-202;Tanc2-204;Tanc2-201;Tanc2-205,Tanc2;Tanc2;Tanc2;Tanc2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,15,20,77097,ENSMUSG00000053580,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25232,cg17514125,0.0000169,0.00000948,1.783292732,0.075516949,gain,ns,0.0000106,0.0000161,0.655518762,0.51261998,pos,ns,0.01145365,0.004718672,2.427303611,0.015780923,pos,ns,1.801867592,-0.000178203,0.000162275,-1.098159054,0.272987242,neg,ns,0.091359471,Lin28a,Lin28a_fiveUTR,4,134018103,134018152,134018103,134018104,50,-,CGGTCATGGACAGGAAGCCGAACCCCATGCGCACGTTGAACCACTTACAG,Promoter (<=1kb),4,134003330,134018841,15512,2,Lin28a-201,689,Lin28a-201;Lin28a-204,Lin28a;Lin28a,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,5,83557,ENSMUSG00000050966,conserved gene but different region,4,134018067,134018242,176,*,176,24,0.721590909,1.052841476,0.136363636,3.84E-22,CpGisland,TRUE,U3,Pr-B
1160,cg23128382,-0.00000745,0.00000148,-5.040791722,0.00000079,loss,yes,-0.00000165,0.00000251,-0.655454403,0.512661347,neg,ns,-0.000453164,0.000735475,-0.616151324,0.538246809,neg,ns,0.269018536,0.000016,0.0000253,0.633335031,0.526981838,pos,ns,0.050252415,Osbp,Osbp_Exon,19,11966205,11966254,11966253,11966254,50,+,CGAGAGGGCTGGCTCTTCAAATGGACCAATTATATCAAAGGCTACCAGCG,Promoter (<=1kb),19,11965941,11994112,28172,1,Osbp-201,264,Osbp-201,Osbp,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,6,76303,ENSMUSG00000024687,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
340,cg18673419,0.000240662,0.0000153,15.68378259,3.22E-41,gain,yes,0.0000171,0.0000261,0.655450079,0.512664126,pos,ns,0.043870882,0.007637189,5.744375696,0.000000022,pos,ns,7.65701185,-0.000497242,0.000262642,-1.893229948,0.059258433,neg,ns,0.58460724,Zfhx4,Zfhx4_Promoter,3,5212396,5212445,5212396,5212397,50,+,CGGAATGCCAATAAAATCGATTAAAGGTTTAGTGTTTTACAAACAACCAT,Promoter (6-7kb),3,5218526,5413165,194640,1,Zfhx4-203,-6081,NA,NA,NA,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,10,77,80892,ENSMUSG00000025255,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4276,cg22188876,-0.000113713,0.00000636,-17.88252684,1.23E-49,loss,yes,-0.00000708,0.0000108,-0.655206066,0.512820986,neg,ns,0.003700492,0.003164884,1.169234568,0.243207389,pos,ns,0.614023235,-0.000784148,0.00010884,-7.204584721,4.45E-12,neg,yes,0.70355711,Scube3,Scube3_Exon,17,28165996,28166045,28165996,28165997,50,-,CGCAGGGAACGTATTACCACGGCCAGACGGAGCAGTGTGTGCCATGCCCA,"Exon (Scube3-201/Scube3, exon 16 of 22)",17,28142141,28174854,32714,1,Scube3-201,23855,Scube3-201;Scube3-207;Scube3-202;Scube3-203;Scube3-206;Scube3-205;Scube3-204,Scube3;Scube3;Scube3;Scube3;Scube3;Scube3;Scube3,0;0;0;0;7122;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,7,268935,ENSMUSG00000038677,conserved gene and region,17,28165967,28166085,119,*,119,9,0.672268908,0.669793621,0.075630252,0.00000392,CpGisland,TRUE,U11,Tr-P
418,cg03150920,0.000008,0.00000348,2.299420531,0.022145546,gain,ns,-0.00000387,0.00000591,-0.655154279,0.51285428,neg,ns,-0.001650592,0.001730897,-0.95360475,0.341026719,neg,ns,0.467211593,0.0000183,0.0000595,0.307806854,0.758436009,pos,ns,0.938820172,Kat5,Kat5_Exon,19,5608868,5608917,5608916,5608917,50,-,AATGGCCTCCCGCTCCTTGGGCAGGTTGAAGCGGAGTGTGATCTGGACCG,"Exon (Kat5-210/Kat5, exon 5 of 15)",19,5603014,5610035,7022,2,Kat5-210,1118,Kat5-212;Kat5-210;Kat5-201;Kat5-211;Kat5-202;Kat5-206;Kat5-203;Kat5-204;Kat5-209;Kat5-205;Kat5-207;Kat5-208;Rnaseh2c-206,Kat5;Kat5;Kat5;Kat5;Kat5;Kat5;Kat5;Kat5;Kat5;Kat5;Kat5;Kat5;Rnaseh2c,0;0;0;0;0;0;0;-598;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,3,81601,ENSMUSG00000024926,conserved gene and region,19,5608802,5608956,155,*,155,10,0.677419355,0.608798115,0.064516129,0.00000373,CpGisland,TRUE,NA,NRS
14887,cg00783833,-0.00000788,0.0000026,-3.036009309,0.00260068,loss,ns,0.00000289,0.00000441,0.655112804,0.512880945,pos,ns,0.000932441,0.001292304,0.721533881,0.471124944,pos,ns,0.326863901,-0.0000311,0.0000444,-0.698690382,0.48526937,neg,ns,0.936695778,Flot2,Flot2_threeUTR,11,78054850,78054899,78054898,78054899,50,+,CTTTAACTGTGACGGGTGTCGCCCAGGTATAGTAACTCAGCAGCCCTGCG,3' UTR,11,78037931,78060434,22504,1,Flot2-201,16919,Flot2-201;Flot2-205;Flot2-203;Flot2-202;Flot2-204,Flot2;Flot2;Flot2;Flot2;Flot2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,13,14252,ENSMUSG00000061981,conserved gene but different region,11,78054805,78054920,116,*,116,9,0.612068966,0.836538462,0.077586207,0.00000318,CpGisland,TRUE,NA,NRS
7255,cg22355370,0.00000483,0.00000194,2.493701965,0.013162825,gain,ns,0.00000216,0.00000329,0.654948843,0.512986365,pos,ns,0.001025404,0.000964041,1.063652357,0.288314042,pos,ns,0.540134206,0.00000406,0.0000332,0.122515543,0.902570123,pos,ns,0.962993253,Adtrp,Adtrp_Intergenic_downstream,13,41759200,41759249,41759248,41759249,50,+,TTGCTGGTTTTCTGCTTTGCCGTTTAGCTGTGACTCCGTCATTTGACTCG,Distal Intergenic,13,41764584,41800566,35983,2,Adtrp-206,41317,Adtrp-201;Adtrp-202,Adtrp;Adtrp,88239;88435,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,109254,ENSMUSG00000058022,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18818,cg24054065,-0.00000186,0.00000214,-0.868345884,0.385876744,loss,ns,0.00000238,0.00000363,0.654836995,0.513058286,pos,ns,-0.000219796,0.001064427,-0.206492185,0.836542024,neg,ns,0.077512237,0.000052,0.0000366,1.421351268,0.156219846,pos,ns,0.960811204,E130114P18Rik,E130114P18Rik_Intron,4,97581529,97581578,97581577,97581578,50,-,TAAGCAGTTCCATCTGTCAAGCAGAAATTTTAGGCTAATAGCCTGTGGCG,"Intron (E130114P18Rik-207/E130114P18Rik, intron 1 of 4)",4,97568133,97584596,16464,2,E130114P18Rik-207,3018,E130114P18Rik-207;E130114P18Rik-201;E130114P18Rik-203;E130114P18Rik-202;E130114P18Rik-206;E130114P18Rik-204;E130114P18Rik-209;E130114P18Rik-208,E130114P18Rik;E130114P18Rik;E130114P18Rik;E130114P18Rik;E130114P18Rik;E130114P18Rik;E130114P18Rik;E130114P18Rik,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,24,319865,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22684,cg27033790,-0.000000169,0.00000412,-0.041125623,0.967222222,loss,ns,0.00000458,0.000007,0.654635888,0.513187614,pos,ns,0.004105728,0.002049421,2.003359408,0.046008833,pos,ns,1.337158786,-0.000114015,0.0000705,-1.617704955,0.106743213,neg,ns,0.062960486,Maf,Maf_Exon,8,115705956,115706005,115705956,115705957,50,+,CGGCAGGACTGGGCATAGCCGCGGTTTTTCAGGGTCCGCCTCTTCTGCTT,"Exon (Maf-201/Maf, exon 1 of 3)",8,115682942,115707096,24155,2,Maf-201,1091,Maf-201;Maf-202,Maf;Maf,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,23,17132,ENSMUSG00000055435,conserved gene and region,8,115705919,115706789,871,*,871,113,0.732491389,0.967968135,0.129735936,6.29E-100,CpGisland,TRUE,U1,Pr-A
15408,cg10587356,-0.00000332,0.000000825,-4.024565851,0.0000718,loss,ns,-0.000000917,0.0000014,-0.654615434,0.513200768,neg,ns,-0.000763852,0.000410607,-1.860296974,0.063790371,neg,ns,1.195244869,0.0000089,0.0000141,0.630199337,0.529028423,pos,ns,0.976128655,Dot1l,Dot1l_threeUTR,10,80778273,80778322,80778321,80778322,50,+,GTGAATAATTTTGCCTTTGGTCCTGAGGTGGATCACCAGCTGAAGGAGCG,3' UTR,10,80755206,80795461,40256,1,Dot1l-201,23067,Dot1l-201;Dot1l-202;Dot1l-206,Dot1l;Dot1l;Dot1l,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,3,208266,ENSMUSG00000061589,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2212,cg07519168,0.000105564,0.0000154,6.864803058,3.64E-11,gain,yes,-0.0000171,0.0000261,-0.6545788,0.51322433,neg,ns,0.020669561,0.007653559,2.70064699,0.007300836,pos,ns,2.136627392,-0.000509374,0.000263205,-1.935271373,0.053866294,neg,ns,0.262223586,Gm37317,Gm37317_Intergenic_upstream,3,18625612,18625661,18625660,18625661,50,-,ATAGTTCAGGCCCAGTCAGACGGAAACGATTGAAAACAGAGAGCTGGCCG,Distal Intergenic,3,18609808,18610831,1024,2,Gm37317-201,-14830,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,10,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
7356,cg27562808,0.0000569,0.00000684,8.319092277,2.85E-15,gain,yes,-0.0000076,0.0000116,-0.654526336,0.513258072,neg,ns,0.004491652,0.003403071,1.319882144,0.187848195,pos,ns,0.726192973,0.00012872,0.000117031,1.099873103,0.272240793,pos,ns,0.085793567,Pou4f3,Pou4f3_Promoter,18,42394766,42394815,42394766,42394767,50,+,CGTAGTGGAGCATAATTACCGCTCTAAGGCACATTTTTTGACAGGCACTA,Promoter (<=1kb),18,42394539,42397249,2711,1,Pou4f3-201,227,Pou4f3-201;Pou4f3-202,Pou4f3;Pou4f3,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,4,17,18998,ENSMUSG00000024497,mapped to different genes,18,42394531,42394786,256,*,256,21,0.625,0.844751729,0.08203125,1.74E-14,CpGisland,TRUE,U13,Hc-P
24759,cg22704389,-0.00000156,0.00000896,-0.174680077,0.861445051,loss,ns,0.00000996,0.0000152,0.654510257,0.513268414,pos,ns,0.006663317,0.004458758,1.494433361,0.136079572,pos,ns,0.866207065,-0.0000898,0.000153336,-0.585600575,0.558570022,neg,ns,0.269034812,Gm14006,Gm14006_Intron,2,128377864,128377913,128377864,128377865,50,-,CGAAACTGAATGTGGGTTGTGAAAGAACATTAAAATGAAGAAAATTTCCC,"Intron (Morrbid-211/Morrbid-211, intron 1 of 6)",2,128557254,128558234,981,2,Gm14006-201,180370,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,383791,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18449,cg19497982,-0.0000157,0.00000944,-1.662376929,0.097447972,loss,ns,0.0000105,0.000016,0.65444408,0.513310978,pos,ns,0.0064545,0.004700781,1.373069689,0.170723032,pos,ns,0.767707885,-0.000376751,0.000161659,-2.330524466,0.020419752,neg,ns,0.769574694,Zfp652,Zfp652_threeUTR,11,95764394,95764443,95764394,95764395,50,-,CGGGAAGGCTGTGAGATTAATCCAGAGCATTAATTGTATCACTGTGTATG,3' UTR,11,95712673,95772353,59681,1,Zfp652-202,51721,Polr2k-ps-201;Zfp652-202;Zfp652-203;Zfp652-204;Zfp652-201,Polr2k-ps;Zfp652;Zfp652;Zfp652;Zfp652,2903;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,3,268469,ENSMUSG00000075595,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15990,cg18137612,0.0000026,0.00000653,0.397475389,0.691290475,gain,ns,-0.00000727,0.0000111,-0.654428257,0.513321156,neg,ns,0.004137046,0.003252384,1.272004322,0.20432495,pos,ns,0.689678599,-0.00017662,0.000111849,-1.579086141,0.115336105,neg,ns,0.881662562,Gm12416,Gm12416_Promoter,4,84099424,84099473,84099424,84099425,50,-,CGCCTTATGAAGAAGTGGTAGAGCAATTTCATTTAATATTGCTAGTGCTT,Promoter (5-6kb),4,84104895,84105902,1008,1,Gm12416-201,-5471,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,11,668010,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12600,cg26779305,0.0000132,0.0000103,1.27264179,0.204098844,gain,ns,-0.0000115,0.0000176,-0.654420702,0.513326015,neg,ns,0.00701727,0.005142908,1.364455705,0.173413843,pos,ns,0.760916237,0.0000667,0.000176864,0.376991838,0.706437602,pos,ns,0.729481123,Map2k4,Map2k4_Exon,11,65734769,65734818,65734817,65734818,50,+,GCGTGGTTTCCAGGAAACCTTCAGTAAGACTGCTGTTAGCCCTAGCCCCG,"Exon (Mir744-201/Mir744-201, exon 1 of 1)",11,65688243,65788297,100055,2,Map2k4-201,53479,Map2k4-201;Map2k4-205;Map2k4-207;Map2k4-203;Map2k4-204,Map2k4;Map2k4;Map2k4;Map2k4;Map2k4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,3,26398,ENSMUSG00000033352,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21769,cg20424894,-0.00000152,0.0000013,-1.169900958,0.242939483,loss,ns,-0.00000144,0.00000221,-0.654375534,0.513355069,neg,ns,0.000814803,0.000646707,1.259926942,0.208643379,pos,ns,0.680595392,-0.0000188,0.0000222,-0.843202275,0.399765456,neg,ns,0.047836029,Fam102b,Fam102b_fiveUTR,3,109027252,109027301,109027252,109027253,50,+,CGAAGGGCACTGAGGAGAGCTCCTCGAGCTCGAAGTCCACCTTAAACTTA,Promoter (<=1kb),3,108970997,109027273,56277,2,Fam102b-201,0,Fam102b-201;Fam102b-202,Fam102b;Fam102b,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,3,329739,ENSMUSG00000040339,conserved gene but different region,3,109026973,109027932,960,*,960,114,0.703125,0.960960961,0.11875,9.47E-96,CpGisland,TRUE,U1,Pr-A
21763,cg00091093,0.0000535,0.00000867,6.178324163,2.03E-09,gain,yes,-0.00000963,0.0000147,-0.654275053,0.513419704,neg,ns,0.007758038,0.004313052,1.798734886,0.073033238,pos,ns,1.136479445,-0.000117886,0.000148326,-0.794782011,0.427348368,neg,ns,0.329621039,Axin2,Axin2_Intergenic_downstream,11,108961976,108962025,108962024,108962025,50,+,TCAGCGTTTGAACTCTTGTTTATTAAAAACAGTTTCCCAGCCATTCAGCG,Distal Intergenic,11,108943621,108950783,7163,1,Axin2-203,18355,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,2,12006,ENSMUSG00000000142,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26754,cg00733912,0.0000199,0.0000112,1.776377488,0.076651438,gain,ns,0.0000125,0.0000191,0.654246414,0.513438127,pos,ns,0.008720079,0.005587813,1.560552937,0.119649534,pos,ns,0.922088989,-0.00012378,0.000192164,-0.64413478,0.519964334,neg,ns,0.344307412,Scrt2,Scrt2_Intergenic_upstream,2,152050431,152050480,152050431,152050432,50,+,CGGCAATGCCCAGGGACCAGGACTGCCGCCCTATTACCAAAAATGTCGTC,Distal Intergenic,2,152081529,152095802,14274,1,Scrt2-201,-31049,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,10,545474,ENSMUSG00000060257,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
7049,cg02380426,0.0000562,0.0000136,4.139110785,0.000045,gain,ns,-0.0000151,0.0000231,-0.654226085,0.513451205,neg,ns,0.036662619,0.006763275,5.4208381,0.000000119,pos,ns,6.922822439,-0.000941383,0.000232588,-4.047418921,0.0000655,neg,ns,0.266247766,Tfap2a,Tfap2a_Exon,13,40719201,40719250,40719249,40719250,50,+,AGGAGCATGTTTTTTCTTGTCACTTGCTCATTGGGATCGGAATGTTGTCG,"Exon (Tfap2a-201/Tfap2a, exon 6 of 7)",13,40715302,40730443,15142,2,Tfap2a-201,11193,Tfap2a-201;Tfap2a-202;Tfap2a-205;Tfap2a-203;Tfap2a-209;Tfap2a-208;Tfap2a-206;Tfap2a-204,Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,13,57,21418,ENSMUSG00000021359,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
6877,cg20837915,-0.00000479,0.00000184,-2.604140694,0.009654035,loss,ns,0.00000204,0.00000313,0.654213129,0.513459539,pos,ns,-0.001673683,0.000915544,-1.828074298,0.068499345,neg,ns,1.164313579,0.0000102,0.0000315,0.322712825,0.747130286,pos,ns,0.046799957,Kdm7a,Kdm7a_Intron,6,39205371,39205420,39205371,39205372,50,+,CGCAGGCTTTGCCACAACACCCAAATAAGGACTTTGGGAGCCCAACCCCA,"Intron (Kdm7a-201/Kdm7a, intron 1 of 19)",6,39136623,39206789,70167,2,Kdm7a-201,1369,Kdm7a-201,Kdm7a,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,8,338523,ENSMUSG00000042599,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
2719,cg13297843,0.000106281,0.0000171,6.201490436,1.79E-09,gain,yes,-0.000019,0.0000291,-0.654111541,0.513524893,neg,ns,0.028287487,0.008529754,3.316330729,0.001020452,pos,ns,2.991207584,-0.000805249,0.000293338,-2.745126421,0.006401681,neg,ns,0.235883629,Kat6b,Kat6b_Intron,14,21607807,21607856,21607807,21607808,50,-,CGGGACATCAGTCTTTCTGGCCATGAACTACTAGCAACCTTTGTCCTTTG,"Intron (Kat6b-211/Kat6b, intron 2 of 5)",14,21481459,21621977,140519,1,Kat6b-211,126348,Kat6b-211;Kat6b-206;Kat6b-204;Kat6b-201;Kat6b-202;Kat6b-208;Kat6b-210;Kat6b-203;Kat6b-214,Kat6b;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,21,54169,ENSMUSG00000021767,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27716,cg15985481,0.00000713,0.00000412,1.731041339,0.084439382,gain,ns,0.00000458,0.000007,0.654088248,0.513539879,pos,ns,0.00011459,0.002050678,0.055878873,0.955474298,pos,ns,0.019780991,0.0000199,0.0000705,0.282841695,0.777486958,pos,ns,0.841819067,Kif26b,Kif26b_Exon,1,178916027,178916076,178916027,178916028,50,+,CGTCAGCATCATCAGCAGCATCAGCGAGGACCTGGAGTGCTACTCCAGCA,"Exon (Kif26b-202/Kif26b, exon 12 of 15)",1,178529125,178939200,410076,1,Kif26b-202,386902,Kif26b-202;Kif26b-201,Kif26b;Kif26b,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,3,269152,ENSMUSG00000026494,conserved gene and region,1,178915940,178916105,166,*,166,10,0.638554217,0.598629643,0.060240964,0.0000068,CpGisland,TRUE,NA,NRS
11613,cg08906488,0.0000148,0.00000294,5.036340887,0.000000807,gain,yes,0.00000327,0.000005,0.654086017,0.513541314,pos,ns,0.002786505,0.001464221,1.903063271,0.057958491,pos,ns,1.236882931,-0.0000335,0.0000504,-0.665566655,0.506183031,neg,ns,0.062966595,Emx2,Emx2_Intergenic_downstream,19,59466049,59466098,59466097,59466098,50,-,ATTAATCAGTTTTATTTCCATTGATAGAGAAACCTCGTCTGTTCTGTTCG,Downstream (<1kb),19,59462802,59464215,1414,1,Emx2-203,3296,Emx2-201;Emx2-202;Emx2-203,Emx2;Emx2;Emx2,0;6530;3247,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,15,23,13797,ENSMUSG00000043969,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
18344,cg00374382,0.000000911,0.00000242,0.37569064,0.707403844,gain,ns,-0.00000269,0.00000412,-0.653792269,0.513730317,neg,ns,0.002508731,0.001206731,2.078948388,0.038444081,pos,ns,1.415170517,-0.000134546,0.0000415,-3.242120333,0.00131564,neg,ns,0.945252154,Pogz,Pogz_Exon,3,94864466,94864515,94864514,94864515,50,+,TTCCCCTCTCCACCTGCAGTGAGCATTGCCAGCTTTGTCACTGTGAAGCG,"Exon (Pogz-205/Pogz, exon 7 of 19)",3,94837567,94882326,44760,1,Pogz-205,26899,Pogz-205;Pogz-202;Pogz-207;Pogz-203;Pogz-201;Pogz-204;Pogz-208;Pogz-209,Pogz;Pogz;Pogz;Pogz;Pogz;Pogz;Pogz;Pogz,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,7,229584,ENSMUSG00000038902,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12070,cg18473472,0.0000179,0.000147733,0.121065237,0.903717796,gain,ns,-0.000164087,0.000250979,-0.653788464,0.513732766,neg,ns,-0.087863016,0.073528325,-1.19495468,0.233018131,neg,ns,0.632610285,0.004658861,0.002528633,1.842442379,0.066365288,pos,ns,0.502437509,Nrp2,Nrp2_Intron,1,62732500,62732549,62732548,62732549,50,+,AATCTCAAATCACTTTGACAGCATTTTAATTATAGTTGATTTGTTTGCCG,"Intron (Nrp2-207/Nrp2, intron 2 of 2)",1,62703285,62739932,36648,1,Nrp2-207,29215,Nrp2-207;Nrp2-203;Nrp2-204;Nrp2-201;Nrp2-205;Nrp2-202;Nrp2-206,Nrp2;Nrp2;Nrp2;Nrp2;Nrp2;Nrp2;Nrp2,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,6,18187,ENSMUSG00000025969,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5704,cg11393097,0.0000161,0.00000464,3.462807236,0.00060973,gain,ns,-0.00000516,0.00000789,-0.653679733,0.513802735,neg,ns,-0.004713957,0.002311131,-2.039675594,0.042230176,neg,ns,1.374377112,0.000243681,0.0000795,3.065954611,0.002360762,pos,ns,0.8975299,Mapkap1,Mapkap1_Intron,2,34602300,34602349,34602300,34602301,50,-,CGAGCGGTTCTGCATGACTAGTTAAAGAAGATGGCAAGAAGATTAATGAA,"Intron (Mapkap1-204/Mapkap1, intron 9 of 10)",2,34406862,34623475,216614,1,Mapkap1-204,195438,Mapkap1-204;Mapkap1-202;Mapkap1-201;Mapkap1-209;Mapkap1-203,Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,59,227743,ENSMUSG00000038696,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17584,cg24138127,-0.0000595,0.00001,-5.947288397,7.35E-09,loss,yes,0.0000111,0.000017,0.653669349,0.513809417,pos,ns,-0.010248708,0.004976299,-2.059504138,0.040280738,neg,ns,1.394902585,0.0000622,0.000171134,0.363642505,0.71637285,pos,ns,0.806785449,Madd,Madd_threeUTR,2,91138719,91138768,91138767,91138768,50,+,TTGTACTTGTGGCTCACCACTTCTTTAATTTCAGGAACTAAAACCGGACG,3' UTR,2,91137360,91179315,41956,2,Madd-211,40547,Madd-211;Madd-212;Madd-206;Madd-207;Madd-208;Madd-213;Madd-205;Madd-203;Madd-204;Madd-209;Madd-210;Madd-214;Madd-202;Madd-215;Madd-216;Madd-224;Madd-226;Madd-227;Madd-228;Madd-218;Madd-221;Mybpc3-201;Mybpc3-202;Mybpc3-203,Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Mybpc3;Mybpc3;Mybpc3,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;16183;13723;20575;20575;20575,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,7,228355,ENSMUSG00000040687,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22880,cg15955330,-0.0000238,0.0000137,-1.738212958,0.083166229,loss,ns,-0.0000152,0.0000232,-0.653533912,0.51389658,neg,ns,0.007770062,0.006801337,1.142431619,0.254156238,pos,ns,0.594899226,-0.000285207,0.000233897,-1.219368111,0.223631466,neg,ns,0.650763198,Meis2,Meis2_Exon,2,116061561,116061610,116061609,116061610,50,-,AGACCAGAGCTAACAGAGGAAACAACGGGTGCCTAACGGGCAGCGCCACG,"Exon (Meis2-201/Meis2, exon 3 of 12)",2,115863064,116065047,201984,2,Meis2-201,3437,Meis2-201;Meis2-203;Meis2-205;Meis2-206;Meis2-204;Meis2-202;Meis2-213;Meis2-210;Meis2-209;Meis2-212,Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2,0;0;0;0;0;0;0;0;0;-2719,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,15,97,17536,ENSMUSG00000027210,conserved gene but different region,2,116061432,116061626,195,*,195,18,0.615384615,0.976084538,0.092307692,2.11E-13,CpGisland,TRUE,NA,NRS
19890,cg10829846,0.000000912,0.0000025,0.364679755,0.715599119,gain,ns,0.00000278,0.00000425,0.653519176,0.513906063,pos,ns,0.002688846,0.001245251,2.159279717,0.031595249,pos,ns,1.500378219,-0.00011848,0.0000428,-2.766657011,0.00600348,neg,ns,0.962898237,Gm43103,Gm43103_Intergenic_downstream,5,101497760,101497809,101497808,101497809,50,-,ACATTTAGTCCGGGGGTGACTCTTCTCCTTGGCACTTGTAGAATAAATCG,Distal Intergenic,5,101505528,101506329,802,2,Gm43103-201,8569,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,10,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10277,cg22921760,0.0000719,0.0000103,6.948623747,2.18E-11,gain,yes,-0.0000115,0.0000176,-0.653472901,0.513935846,neg,ns,0.008895492,0.005148475,1.727791735,0.085021468,pos,ns,1.070471401,-0.000199843,0.000177056,-1.128702532,0.259896052,neg,ns,0.212141014,Sall2,Sall2_fiveUTR,14,52328432,52328481,52328480,52328481,50,+,CCTACGCTTCTGCAGCTCCCATTGTAAAAGCAAAAATCCTAATCTTTCCG,Promoter (<=1kb),14,52311177,52328762,17586,2,Sall2-201,281,Sall2-201,Sall2,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,2,50524,ENSMUSG00000049532,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
15660,cg09624128,-0.000103206,0.0000229,-4.516039028,0.00000897,loss,ns,0.0000254,0.0000388,0.653470462,0.513937416,pos,ns,0.066013969,0.011374267,5.803799661,0.000000016,pos,ns,7.795358002,-0.003458473,0.00039116,-8.841579131,7.25E-17,neg,yes,0.658834583,Nfib,Nfib_Intron,4,82560454,82560503,82560454,82560455,50,-,CGGGTGCCCTGCTTAATTATAAAATGGCATTGCAGTGTCCCTTTGAGTTG,"Intron (Nfib-212/Nfib, intron 1 of 1)",4,82498321,82705750,207430,2,Nfib-212,145247,Nfib-212,Nfib,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,66,18028,ENSMUSG00000008575,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26852,cg14436094,-0.00000123,0.00000127,-0.961870084,0.336864528,loss,ns,-0.00000141,0.00000216,-0.653418582,0.513970808,neg,ns,0.001651897,0.00063422,2.604613243,0.009641023,pos,ns,2.015876898,-0.0000471,0.0000218,-2.1590991,0.031609383,neg,ns,0.956827132,Asxl1,Asxl1_Exon,2,153399257,153399306,153399305,153399306,50,+,AAACCACCCTGGGTGGTTAAAGGTCAGCCCACTTACCAGATATGCCCCCG,"Exon (Asxl1-205/Asxl1, exon 12 of 12)",2,153345829,153404007,58179,1,Asxl1-205,53428,Asxl1-205;Asxl1-201;Asxl1-203,Asxl1;Asxl1;Asxl1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,8,228790,ENSMUSG00000042548,conserved gene and region,2,153399251,153399485,235,*,235,15,0.65106383,0.604423868,0.063829787,6.19E-09,CpGisland,TRUE,U10,Tr-S
4061,cg00897537,0.0000162,0.00000787,2.062403269,0.040002238,gain,ns,0.00000873,0.0000134,0.653403589,0.513980458,pos,ns,-0.007719552,0.003915509,-1.971531878,0.04955204,neg,ns,1.304938462,0.000353839,0.000134654,2.627761126,0.009022532,pos,ns,0.796690301,Gm45647,Gm45647_Intergenic_upstream,8,26677681,26677730,26677729,26677730,50,-,GTCCGTGCACTTGTAAGGAATGAAAGCCTGATTATTTTCTACAACAGTCG,Distal Intergenic,8,26780315,26780509,195,1,Gm45647-201,-102634,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,46,62,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1641,cg13027777,-0.0000105,0.00000273,-3.850082812,0.000143441,loss,ns,0.00000303,0.00000464,0.653382088,0.513994297,pos,ns,-0.000957233,0.001358892,-0.70442193,0.481698895,neg,ns,0.31722435,0.0000274,0.0000467,0.585822309,0.558421179,pos,ns,0.047171617,Hivep2,Hivep2_Intron,10,13967498,13967547,13967546,13967547,50,-,GGGTCTGCGCCTTTATGTCTGTTCCCTGAAGTGGGTGGAACGTTGGCCCG,"Intron (Hivep2-204/Hivep2, intron 1 of 12)",10,13966075,14150589,184515,1,Hivep2-204,1423,Hivep2-204;Hivep2-201;Hivep2-205;Hivep2-203;Hivep2-202;Hivep2-206,Hivep2;Hivep2;Hivep2;Hivep2;Hivep2;Hivep2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,9,15273,ENSMUSG00000015501,conserved gene but different region,10,13966596,13967658,1063,*,1063,102,0.67826905,0.874727722,0.095954845,2.58E-75,CpGisland,TRUE,U1,Pr-A
3499,cg19280205,-0.00000201,0.00000755,-0.266644287,0.789920332,loss,ns,-0.00000838,0.0000128,-0.65332596,0.514030424,neg,ns,0.002964457,0.003757588,0.788925566,0.430758444,pos,ns,0.365766201,-0.000136985,0.000129223,-1.060065455,0.289940047,neg,ns,0.812245656,Bcl11a,Bcl11a_threeUTR,11,24172846,24172895,24172846,24172847,50,+,CGTGGTCTGTCATCCTGCTAGTTTGTGATGTTTTCTGACAGTAGCCTCCA,3' UTR,11,24078056,24173194,95139,1,Bcl11a-201,94790,Bcl11a-201;Bcl11a-203;Bcl11a-202;Bcl11a-204,Bcl11a;Bcl11a;Bcl11a;Bcl11a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,98,14025,ENSMUSG00000000861,conserved gene and region,11,24172813,24172854,42,*,42,8,0.761904762,1.317647059,0.190476191,9.27E-09,CpGisland,TRUE,U11,Tr-P
22680,cg26375896,-0.000137332,0.0000122,-11.21697272,9.79E-25,loss,yes,0.0000136,0.0000208,0.653150287,0.514143508,pos,ns,-0.006488183,0.006093577,-1.0647576,0.287814263,neg,ns,0.540887688,0.000196082,0.000209558,0.935693792,0.350159189,pos,ns,0.839134006,Maf,Maf_threeUTR,8,115703346,115703395,115703346,115703347,50,-,CGTGGTTAGTTAGTAACTCAAGATATAAAACAATTTTGCACAGCAAAATA,3' UTR,8,115682942,115707096,24155,2,Maf-201,3701,Maf-201;Maf-202,Maf;Maf,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,23,17132,ENSMUSG00000055435,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
10619,cg11090404,-0.00000164,0.000000665,-2.464609002,0.014258335,loss,ns,-0.000000737,0.00000113,-0.653061891,0.514200415,neg,ns,0.000354593,0.000330766,1.072036375,0.284537554,pos,ns,0.545860407,-0.0000288,0.0000114,-2.533886079,0.011772798,neg,ns,0.012499574,1700123O20Rik,1700123O20Rik_fiveUTR,14,54686534,54686583,54686534,54686535,50,+,CGGCCTTCAGGTCGGTCACCCGCAGCGCCTGAAGAGGCTTCCCGTCCAGA,Promoter (<=1kb),14,54686216,54690741,4526,1,1700123O20Rik-201,318,1700123O20Rik-201;1700123O20Rik-202;1700123O20Rik-204;1700123O20Rik-203;Acin1-201;Acin1-218;Acin1-203;Acin1-206;Acin1-212;Acin1-210,1700123O20Rik;1700123O20Rik;1700123O20Rik;1700123O20Rik;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1,0;0;0;-461;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,5,58248,ENSMUSG00000040822,mapped to different genes,14,54686230,54687055,826,*,826,78,0.633171913,0.949845201,0.094430993,3.48E-57,CpGisland,TRUE,U1,Pr-A
21391,cg15157953,-0.00000442,0.00000171,-2.585032557,0.010193566,loss,ns,-0.0000019,0.0000029,-0.65291722,0.514293557,neg,ns,-0.000238387,0.000850402,-0.280323146,0.779416568,neg,ns,0.108230367,0.00000668,0.0000292,0.228369228,0.819509776,pos,ns,0.956403287,Helz,Helz_Exon,11,107604236,107604285,107604236,107604237,50,-,CGTGTATAAAGTCGGGATAGCATTTAACACAGAAATATTTGGAACTTTTC,"Exon (Helz-202/Helz, exon 12 of 30)",11,107547956,107672287,124332,1,Helz-202,56280,Helz-202;Helz-201;Helz-203,Helz;Helz;Helz,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,8,78455,ENSMUSG00000020721,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26980,cg07854068,0.00000507,0.00000267,1.893648611,0.059202596,gain,ns,-0.00000297,0.00000454,-0.652836534,0.514345507,neg,ns,0.000643788,0.001331368,0.483554008,0.629043794,pos,ns,0.201319118,-0.000049,0.0000458,-1.071240116,0.284894768,neg,ns,0.926766858,Lhx4,Lhx4_threeUTR,1,155702119,155702168,155702119,155702120,50,+,CGGAGGACTTCCATTGAAAATAATGGAAATTCACATTGGCGTACTTTCGA,3' UTR,1,155698031,155742027,43997,2,Lhx4-201,39859,Lhx4-201;Lhx4-202,Lhx4;Lhx4,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,7,16872,ENSMUSG00000026468,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14549,cg07630144,0.000000155,0.00000397,0.039118785,0.968820865,gain,ns,0.0000044,0.00000674,0.652790717,0.514375009,pos,ns,0.002085398,0.001975128,1.055829436,0.291868283,pos,ns,0.534813097,-0.000119822,0.0000679,-1.764051034,0.078708279,neg,ns,0.904003857,Zbtb1,Zbtb1_Exon,12,76387105,76387154,76387105,76387106,50,-,CGACTGCACAATGATATGCACAAAGGCATGGCCAGGTATGTCTGTTCCAT,"Exon (Zbtb1-201/Zbtb1, exon 2 of 2)",12,76370266,76396950,26685,1,Zbtb1-201,16839,Zbtb1-201,Zbtb1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,5,268564,ENSMUSG00000033454,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14615,cg04149829,-0.0000171,0.0000193,-0.883535976,0.37763143,loss,ns,0.0000214,0.0000328,0.652620054,0.514484905,pos,ns,-0.015279262,0.009608945,-1.590108149,0.11282969,neg,ns,0.947576604,0.000629824,0.000330451,1.905952664,0.057581078,pos,ns,0.462060925,Skor2,Skor2_Intron,18,76861260,76861309,76861260,76861261,50,-,CGCAGGAAAGATGAATCACCAGATTTCCCCACAGAAATGAAATATTCAGT,"Intron (Skor2-201/Skor2, intron 2 of 8)",18,76856405,76900342,43938,1,Skor2-201,4855,Skor2-201,Skor2,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,7,664805,ENSMUSG00000091519,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
7277,cg14498322,-0.000000443,0.00000259,-0.170763604,0.864521049,loss,ns,0.00000287,0.0000044,0.652069687,0.514839392,pos,ns,0.003458073,0.001290128,2.680411225,0.007746387,pos,ns,2.110900832,-0.0000919,0.0000444,-2.071875267,0.039103741,neg,ns,0.046538517,Sorl1,Sorl1_Intergenic_downstream,9,41950680,41950729,41950680,41950681,50,+,CGCAGTCGGGCAGATTGGGTTAAACCAAATATTACAATTGCAAGAACTCA,Distal Intergenic,9,41969739,41974587,4849,2,Sorl1-202,23858,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,6,20660,ENSMUSG00000049313,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
15410,cg07587072,0.00000261,0.00000186,1.402897894,0.16164802,gain,ns,0.00000206,0.00000316,0.651917457,0.514937465,pos,ns,0.001611532,0.000926187,1.739963939,0.082857768,pos,ns,1.08166677,-0.0000444,0.0000319,-1.393711116,0.164403163,neg,ns,0.071279475,Myo1d,Myo1d_Exon,11,80779702,80779751,80779750,80779751,50,-,GCCTGAGGTTGGCCATGAACTCGGGCATGGAGACGGTGTCCATCAGCACG,Promoter (<=1kb),11,80482126,80780025,297900,2,Myo1d-201,274,Myo1d-201;Myo1d-202;Myo1d-203,Myo1d;Myo1d;Myo1d,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,338367,ENSMUSG00000035441,conserved gene and region,11,80779532,80780232,701,*,701,84,0.740370899,0.874688057,0.119828816,4.28E-71,CpGisland,TRUE,U1,Pr-A
23214,cg06182411,-0.0000364,0.000015,-2.430047689,0.015664218,loss,ns,0.0000166,0.0000255,0.651810047,0.515006668,pos,ns,-0.005221957,0.00745819,-0.700164153,0.484349909,neg,ns,0.314840777,0.000245257,0.000256487,0.956218595,0.339706897,pos,ns,0.705404094,Rnf220,Rnf220_Intron,4,117492679,117492728,117492727,117492728,50,-,TTTAGCACTTCGTGCAAATCCAGATTAAAATAACTCCAGCTATTGATCCG,"Intron (Rnf220-201/Rnf220, intron 1 of 14)",4,117271463,117497052,225590,2,Rnf220-201,4324,Rnf220-201;Rnf220-207;Rnf220-204,Rnf220;Rnf220;Rnf220,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
12284,cg07955910,-0.0000157,0.00000686,-2.291459672,0.022607237,loss,ns,-0.0000076,0.0000117,-0.651697553,0.515079153,neg,ns,-0.007580547,0.003416657,-2.218702908,0.02723098,neg,ns,1.564936722,-0.0000261,0.000117499,-0.221931857,0.824513061,neg,ns,0.78051975,Gm13751,Gm13751_Promoter,1,63848520,63848569,63848568,63848569,50,+,CATCTGTTTTCCCATAATGCTCTCATTCCCTCTTCCAGATGTTTGGCACG,Promoter (2-3kb),1,63844827,63845578,752,2,Gm13751-201,-2942,Gm13751-201,Gm13751,-2942,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,1,100416203,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18585,cg23390662,0.00000235,0.0000124,0.190337614,0.849169161,gain,ns,0.0000137,0.000021,0.6516881,0.515085244,pos,ns,-0.015692033,0.006149233,-2.551868183,0.011194303,neg,ns,1.951002952,0.000643503,0.000211472,3.04297327,0.002542967,pos,ns,0.279294563,Hoxb5,Hoxb5_fiveUTR,11,96303511,96303560,96303511,96303512,50,+,CGAAGTACAGTGCATCGCTATAATTCATTAATACATCATAAATCGTGAAG,Promoter (<=1kb),11,96303512,96306120,2609,1,Hoxb5-201,0,Hoxb5-202;Hoxb5-201;Hoxb6-202;Hoxb6-201,Hoxb5;Hoxb5;Hoxb6;Hoxb6,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,34,15413,ENSMUSG00000038700,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
26153,cg08001107,-0.000142226,0.0000139,-10.23796943,2.21E-21,loss,yes,-0.0000154,0.0000236,-0.651665033,0.515100108,neg,ns,0.037123074,0.006914185,5.369117952,0.000000155,pos,ns,6.808482093,-0.001213065,0.000237778,-5.10166714,0.000000588,neg,yes,0.576822272,Lmo4,Lmo4_Exon,3,144198139,144198188,144198139,144198140,50,-,CGCTTGGTTAATTCAGAGTAACAGATCTGCCCCCAAGTGAATTGGAGGCC,"Exon (Gm43445-201/Gm43445-201, exon 1 of 1)",3,144188530,144202396,13867,2,Lmo4-203,4208,Lmo4-203;Lmo4-201;Lmo4-202;Lmo4-207;Lmo4-206;Lmo4-208;Lmo4-205;Lmo4-204,Lmo4;Lmo4;Lmo4;Lmo4;Lmo4;Lmo4;Lmo4;Lmo4,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,18,54,16911,ENSMUSG00000028266,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2519,cg18962324,-0.00000694,0.00000313,-2.214582069,0.027515804,loss,ns,0.00000347,0.00000532,0.651529617,0.515187371,pos,ns,0.003429777,0.001558779,2.200296925,0.028523243,pos,ns,1.544801098,-0.0000671,0.0000536,-1.251200145,0.21180487,neg,ns,0.117273724,Rab1a,Rab1a_fiveUTR,11,20201608,20201657,20201608,20201609,50,+,CGGCGGCGGCAGCTGCAGTGACATGTCCAGCATGAATCCCGAATAGTGAG,Promoter (<=1kb),11,20201609,20223572,21964,1,Rab1a-205,0,Rab1a-201;Rab1a-203;Rab1a-204;Rab1a-202;Rab1a-206;Rab1a-205,Rab1a;Rab1a;Rab1a;Rab1a;Rab1a;Rab1a,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,3,19324,ENSMUSG00000020149,conserved gene and region,11,20201557,20201939,383,*,383,46,0.751958225,0.93712766,0.120104439,3.19E-39,CpGisland,TRUE,U1,Pr-A
22676,cg17137627,0.000179649,0.0000219,8.218419165,5.69E-15,gain,yes,-0.0000242,0.0000371,-0.651482849,0.51521751,neg,ns,0.005256056,0.010879624,0.48311011,0.629358569,pos,ns,0.20110185,-0.000218455,0.000374149,-0.583872051,0.55973099,neg,ns,0.551298127,Sox6,Sox6_Intron,7,115667180,115667229,115667180,115667181,50,+,CGATGAGAAAGGCAGTTTGTCTTAATAGAGCCTGTCAGCCCACAGCCCCA,"Intron (Sox6-210/Sox6, intron 5 of 15)",7,115470872,116031047,560176,2,Sox6-210,363818,Sox6-210;Sox6-201;Sox6-202;Sox6-204;Sox6-205;Sox6-203;Sox6-212;Sox6-206;Sox6-209;Sox6-214;Sox6-207;Sox6-213,Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,37,57,20679,ENSMUSG00000051910,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21753,cg21745893,-0.000000391,0.00000114,-0.341762708,0.732761036,loss,ns,0.00000127,0.00000194,0.651481395,0.515218447,pos,ns,0.0000925,0.000569359,0.162430665,0.871072549,pos,ns,0.059945672,-0.0000175,0.0000196,-0.891240986,0.373491105,neg,ns,0.975127222,Zfhx3,Zfhx3_Exon,8,108956727,108956776,108956727,108956728,50,+,CGATCCTAGCACCGCATCTACCTCGCAGTCTGCCGCTCACTCAAACGACA,"Exon (Zfhx3-204/Zfhx3, exon 16 of 16)",8,107942644,108961630,1018987,1,Zfhx3-204,1014083,Zfhx3-204;Zfhx3-201,Zfhx3;Zfhx3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,46,177,11906,ENSMUSG00000038872,conserved gene and region,8,108956727,108956910,184,*,184,18,0.673913044,1.045454546,0.097826087,7.25E-14,CpGisland,TRUE,NA,NRS
27611,cg03476290,0.00000656,0.00000753,0.870198149,0.384865444,gain,ns,0.00000834,0.0000128,0.651424186,0.515255317,pos,ns,0.004211846,0.003749445,1.123325303,0.262168537,pos,ns,0.581419429,-0.000212079,0.000128943,-1.644748981,0.101035194,neg,ns,0.801663909,Copa,Copa_Exon,1,172121341,172121390,172121341,172121342,50,-,CGTGGAAAGCCAGTAGAAAAGTGTCCACTCAGTGGGGCCTGCTATTCCCC,"Exon (Copa-206/Copa, exon 32 of 33)",1,172082529,172122325,39797,1,Copa-206,38812,Copa-206;Copa-201;Copa-202;Copa-208,Copa;Copa;Copa;Copa,0;0;0;3239,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,12847,ENSMUSG00000026553,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19918,cg13068315,-0.00000418,0.00000221,-1.891057029,0.059548945,loss,ns,0.00000245,0.00000376,0.65135352,0.51530086,pos,ns,0.000523464,0.001100559,0.47563432,0.634669906,pos,ns,0.197452094,-0.00000627,0.0000378,-0.16559407,0.868584353,neg,ns,0.961406026,Ogt,Ogt_Exon,X,101653974,101654023,101654022,101654023,50,+,AGAAGGTTTCAGGTGGGTGAAACCTCCTATTCCATGCGTAAGGTGCCTCG,"Exon (Ogt-205/Ogt, exon 5 of 5)",20,101640060,101682940,42881,1,Ogt-202,13914,Ogt-202;Ogt-206;Ogt-201;Ogt-205;Ogt-204;Ogt-207;Ogt-203,Ogt;Ogt;Ogt;Ogt;Ogt;Ogt;Ogt,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,32,33,108155,ENSMUSG00000034160,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9321,cg24082322,0.0000776,0.0000112,6.922514178,2.56E-11,gain,yes,-0.0000124,0.000019,-0.651173222,0.515417071,neg,ns,0.012957916,0.005575974,2.323883891,0.020777972,pos,ns,1.682396843,-0.000307311,0.000191757,-1.602605073,0.110040273,neg,ns,0.296122129,Nxpe4,Nxpe4_Intron,9,48140814,48140863,48140862,48140863,50,-,CCCTTTTAATATGCTAAATGAGCGAGCAAATGAGCCTTCCTCCACTTGCG,"Intron (Gm40518-201/Gm40518-201, intron 1 of 2)",9,48162023,48399871,237849,1,Nxpe4-203,-21209,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,7,244853,ENSMUSG00000044229,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27672,cg20397886,0.00000735,0.00000402,1.825899116,0.068827307,gain,ns,-0.00000445,0.00000684,-0.650851149,0.515624696,neg,ns,-0.004033099,0.00200266,-2.013870608,0.044886803,neg,ns,1.347881325,-0.000152736,0.0000689,-2.217700056,0.027300059,neg,ns,0.801340279,Sdccag8,Sdccag8_Intron,1,176952102,176952151,176952102,176952103,50,-,CGTTTTGTAATTAAGAGGAACAATGGGAGTCCATGGGGTCTCGTTATATA,"Intron (Sdccag8-204/Sdccag8, intron 16 of 16)",1,176814660,176956360,141701,1,Sdccag8-204,137442,Sdccag8-204;Sdccag8-201;Sdccag8-203,Sdccag8;Sdccag8;Sdccag8,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,20,76816,ENSMUSG00000026504,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17479,cg11747251,-0.00000824,0.00000289,-2.853816557,0.004610556,loss,ns,-0.00000319,0.00000491,-0.65080753,0.515652818,neg,ns,-0.000753191,0.001437416,-0.523989278,0.600660418,neg,ns,0.221370986,-0.00000117,0.0000494,-0.023634973,0.981158982,neg,ns,0.057358854,Crebzf,Crebzf_threeUTR,7,90444069,90444118,90444117,90444118,50,-,CGTCGTCTTCTCTTAAAATGTAGGGTCAAGTAATCTGCTCTTTATCCGCG,3' UTR,7,90442729,90446104,3376,1,Crebzf-201,1340,Crebzf-201;Crebzf-203;Crebzf-204;Crebzf-205;Crebzf-202;Crebzf-208;Crebzf-207;Crebzf-209;Crebzf-206,Crebzf;Crebzf;Crebzf;Crebzf;Crebzf;Crebzf;Crebzf;Crebzf;Crebzf,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,9,233490,ENSMUSG00000051451,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
5720,cg12952128,0.00000584,0.00000308,1.900187704,0.058336147,gain,ns,-0.0000034,0.00000522,-0.650627257,0.515769054,neg,ns,0.002024809,0.001530605,1.32288124,0.186849864,pos,ns,0.728507213,-0.0000197,0.0000526,-0.373689963,0.708890428,neg,ns,0.941754733,Add1,Add1_Exon,5,34616841,34616890,34616841,34616842,50,+,CGTGAAACCCTTGCTGCAGTCTCTCTCGTCCGGTGTCTGCGTGCCAAGCT,"Exon (Add1-201/Add1, exon 10 of 16)",5,34573664,34632308,58645,1,Add1-204,43177,Add1-204;Add1-201;Add1-205;Add1-203;Add1-202;Add1-206;Add1-209;Add1-215;Add1-213;Add1-207;Add1-208,Add1;Add1;Add1;Add1;Add1;Add1;Add1;Add1;Add1;Add1;Add1,0;0;0;0;0;0;0;0;-2464;-2959;-3081,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,6,11518,ENSMUSG00000029106,conserved gene and region,5,34616676,34616881,206,*,206,15,0.572815534,0.894097222,0.072815534,9.91E-10,CpGisland,TRUE,U10,Tr-S
3576,cg02711775,-0.0000269,0.00000873,-3.084934166,0.002219425,loss,ns,0.00000964,0.0000148,0.650499434,0.515851479,pos,ns,-0.007316397,0.004343681,-1.684377132,0.093115301,neg,ns,1.030978949,-0.0000463,0.000149379,-0.310199088,0.756618,neg,ns,0.727730717,Chpf2,Chpf2_Exon,5,24592149,24592198,24592197,24592198,50,-,CTGGAGGTGATGGATGTTTTCCTCCGGTTCTCAGGGCTCCACCTCTTTCG,"Exon (Chpf2-201/Chpf2, exon 4 of 5)",5,24586741,24594395,7655,1,Chpf2-201,5408,Chpf2-201;Chpf2-206;Chpf2-202;Chpf2-204;Chpf2-203;Chpf2-205;Smarcd3-205;Smarcd3-201;Smarcd3-208;Smarcd3-207;Smarcd3-203;Smarcd3-206;Smarcd3-204;Smarcd3-202,Chpf2;Chpf2;Chpf2;Chpf2;Chpf2;Chpf2;Smarcd3;Smarcd3;Smarcd3;Smarcd3;Smarcd3;Smarcd3;Smarcd3;Smarcd3,0;5407;0;5377;0;-1289;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,100910,ENSMUSG00000038181,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13717,cg09294904,0.00000813,0.00000398,2.039713648,0.042226359,gain,ns,-0.0000044,0.00000677,-0.650304221,0.515977374,neg,ns,-0.000662657,0.001983287,-0.334120461,0.738514579,neg,ns,0.131640927,0.0000141,0.0000682,0.20710184,0.836066296,pos,ns,0.928787445,Med31,Med31_Intergenic_upstream,11,72229965,72230014,72230013,72230014,50,+,ATATTTAAAACAAGCCCACACAATGCCTGTAATTTTTCATTCTGACTCCG,Distal Intergenic,11,72211724,72215592,3869,2,Med31-201,-14373,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,67279,ENSMUSG00000020801,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12186,cg01112486,-0.0000108,0.0000106,-1.020793906,0.308148049,loss,ns,-0.0000117,0.000018,-0.650264252,0.516003152,neg,ns,0.001125362,0.005260456,0.213928671,0.83074332,pos,ns,0.080533142,-0.000256549,0.000180907,-1.418127306,0.157158044,neg,ns,0.783382524,Map2k5,Map2k5_Intron,9,63262645,63262694,63262645,63262646,50,-,CGTGTTTGGCTGGGAGTAAAGGTGGCTGCAATTCAAATCAACATCACAGC,"Intron (Map2k5-201/Map2k5, intron 14 of 21)",9,63163768,63377902,214135,2,Map2k5-201,115208,Map2k5-201;Map2k5-202,Map2k5;Map2k5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,34,37,23938,ENSMUSG00000058444,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9798,cg05017276,0.0000279,0.00000687,4.064847942,0.000061,gain,ns,-0.00000759,0.0000117,-0.650206985,0.516040088,neg,ns,0.001714312,0.003418674,0.501455195,0.616406718,pos,ns,0.210132637,0.0000138,0.000117568,0.117600132,0.906460658,pos,ns,0.03235473,Trps1,Trps1_Promoter,15,50890048,50890097,50890096,50890097,50,-,TACGTCAGTTTCAAGACACCAACACTATTAATATCAAAGGAGCCTTCGCG,Promoter (<=1kb),15,50846176,50890463,44288,2,Trps1-208,366,Trps1-202;Trps1-206;Trps1-204;Trps1-205;Trps1-201;Trps1-208,Trps1;Trps1;Trps1;Trps1;Trps1;Trps1,0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,9,36,83925,ENSMUSG00000038679,conserved gene and region,15,50890094,50890382,289,*,289,43,0.806228374,0.917663565,0.148788927,2.36E-41,CpGisland,TRUE,U2,Pr-W
16485,cg04548337,-0.0000225,0.00000672,-3.343340595,0.000929255,loss,ns,-0.00000742,0.0000114,-0.65018546,0.516053971,neg,ns,-0.007979598,0.003345283,-2.385328151,0.017664374,neg,ns,1.752901749,0.000123236,0.000115044,1.071210468,0.284908074,pos,ns,0.71280268,Dmd,Dmd_Exon,X,85153097,85153146,85153097,85153098,50,-,CGTAGTCCTGCCCAGATCTTGATTTCCTTAGAGAGTGAGGAAAGAGGGGA,"Exon (Dmd-203/Dmd, exon 74 of 79)",20,82948903,85206141,2257239,1,Dmd-203,2204194,Dmd-203;Dmd-215;Dmd-214;Dmd-202;Dmd-201,Dmd;Dmd;Dmd;Dmd;Dmd,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,20,28,13405,ENSMUSG00000045103,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
823,cg17429628,-0.0000224,0.00000543,-4.122516636,0.0000482,loss,ns,-0.000006,0.00000923,-0.650094805,0.516112446,neg,ns,-0.002048256,0.00270471,-0.757292434,0.4494499,neg,ns,0.347318712,0.0000123,0.000093,0.131716508,0.895293972,pos,ns,0.853302196,Chd7,Chd7_Intron,4,8850587,8850636,8850587,8850588,50,-,CGGTTGCCAGGCAGGCCTGTTGGAAGCCAGCAGAAAGCACCACACAGAGG,"Intron (Chd7-201/Chd7, intron 23 of 37)",4,8690921,8866810,175890,1,Chd7-201,159666,Chd7-201;Chd7-202;Chd7-206;Chd7-208,Chd7;Chd7;Chd7;Chd7,0;0;0;-4595,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,16,320790,ENSMUSG00000041235,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15372,cg13486604,0.0000148,0.00000963,1.53340096,0.126196985,gain,ns,-0.0000106,0.0000164,-0.650046941,0.516143321,neg,ns,-0.007491692,0.004791868,-1.56341776,0.118974596,neg,ns,0.924545763,0.000168927,0.000164792,1.025094796,0.30611769,pos,ns,0.855074742,Nckap1,Nckap1_Exon,2,80528608,80528657,80528656,80528657,50,+,GATTGAGAGGGTAACTCCAAACACTGTTGAAACATCTTCTCAAAAGCACG,"Exon (Nckap1-201/Nckap1, exon 17 of 31)",2,80500512,80581264,80753,2,Nckap1-201,52607,Nckap1-201;Nckap1-202;Nckap1-205,Nckap1;Nckap1;Nckap1,0;0;-2928,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,7,50884,ENSMUSG00000027002,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3043,cg05497094,0.0000772,0.0000129,5.971088894,6.45E-09,gain,yes,0.0000143,0.000022,0.650013148,0.516165119,pos,ns,0.019548679,0.006439031,3.035965796,0.002601044,pos,ns,2.584852269,-0.000201106,0.000221438,-0.908182021,0.364487528,neg,ns,0.709616955,Lrmda,Lrmda_Intron,14,22474523,22474572,22474571,22474572,50,+,CTTACATTGTTGGAACAAGAAGCAATCCTAACAAATATTGATCCTCTCCG,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,454811,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206;Lrmda-202,Lrmda;Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7962,cg03940337,0.0000347,0.00000872,3.982337703,0.0000851,gain,ns,-0.00000962,0.0000148,-0.649931887,0.51621754,neg,ns,-0.007752298,0.004337802,-1.787148998,0.074890308,neg,ns,1.125574381,0.000359295,0.000149177,2.408517902,0.016600721,pos,ns,0.14709136,Pax2,Pax2_Intergenic_upstream,19,44670946,44670995,44670946,44670947,50,+,CGCACTGCAGCGCGGCACCAGCAGTCTATGACAAAAACATTATCCTTCTG,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-85050,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,19,44670871,44670957,87,*,87,8,0.701149425,0.899224806,0.091954023,0.00000415,CpGisland,TRUE,U13,Hc-P
22104,cg04349438,-0.00000878,0.0000121,-0.724073342,0.469566778,loss,ns,0.0000134,0.0000206,0.649868918,0.516258162,pos,ns,-0.011787675,0.00603234,-1.954080156,0.051590651,neg,ns,1.287428995,0.000521055,0.000207452,2.511695868,0.0125233,pos,ns,0.277038494,Ttc28,Ttc28_Intron,5,110978907,110978956,110978955,110978956,50,+,TTTACAAACGAGAAATACACCCAGAATTGTGGGAATTGCTCCAGGCTGCG,"Intron (Ttc28-201/Ttc28, intron 2 of 23)",5,110879803,111289779,409977,1,Ttc28-201,99104,Ttc28-201;Ttc28-206,Ttc28;Ttc28,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,3,209683,ENSMUSG00000033209,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8805,cg03218069,0.000000326,0.00000217,0.150063132,0.880812394,gain,ns,-0.0000024,0.00000369,-0.649814487,0.516293278,neg,ns,0.0000289,0.001081461,0.026739901,0.978684393,pos,ns,0.009357337,-0.0000451,0.0000372,-1.211983168,0.226441764,neg,ns,0.94209702,Oga,Oga_Intron,19,45763843,45763892,45763843,45763844,50,+,CGCTGTCCATCCAATAGTAGTAGACACTTGTGCTGAGGATTCTCCCATCT,"Intron (Oga-201/Oga, intron 10 of 15)",19,45750259,45783551,33293,2,Oga-201,19659,Oga-201;Oga-204;Oga-203;Oga-206;Oga-205,Oga;Oga;Oga;Oga;Oga,0;0;0;0;19884,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,21,76055,ENSMUSG00000025220,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16922,cg04321926,-0.00000208,0.00000162,-1.283908288,0.200132825,loss,ns,0.00000179,0.00000275,0.649783311,0.516313392,pos,ns,0.00134695,0.000805249,1.672713114,0.095392631,pos,ns,1.020485171,-0.0000812,0.0000277,-2.932678103,0.003610882,neg,ns,0.956409124,Gm9540,Gm9540_Intergenic_downstream,9,87411262,87411311,87411310,87411311,50,-,TAACATTTTATTGAAGTAACTGCCGTGCTTATTAGCCCGTAAGATTTACG,Distal Intergenic,9,87394250,87394727,478,1,Gm9540-201,17061,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,7,671706,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6065,cg23863626,0.0000469,0.00000633,7.405717767,1.24E-12,gain,yes,-0.00000698,0.0000108,-0.649677013,0.516381974,neg,ns,0.007750176,0.00314958,2.460701099,0.014411486,pos,ns,1.841291247,-0.000191818,0.000108314,-1.77094738,0.077552036,neg,ns,0.164130134,Psd2,Psd2_Intergenic_upstream,18,35933612,35933661,35933612,35933613,50,+,CGGAAAGAAGTTTCCCCACTGAGTTAATCTGCAGTGGCTGGAGGTGACCT,Distal Intergenic,18,35964830,36014712,49883,1,Psd2-201,-31169,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,24,29,74002,ENSMUSG00000024347,mapped to different genes,18,35933527,35933613,87,*,87,8,0.609195402,0.991452992,0.091954023,0.00000415,CpGisland,TRUE,U13,Hc-P
2928,cg22185702,-0.00000573,0.00000969,-0.591286234,0.554759546,loss,ns,0.0000107,0.0000165,0.649603116,0.516429654,pos,ns,0.001634774,0.004822873,0.338962592,0.7348674,pos,ns,0.133791018,-0.000175384,0.000165858,-1.057431466,0.291138024,neg,ns,0.791376367,Gm11880,Gm11880_Intergenic_downstream,4,22067504,22067553,22067504,22067505,50,+,CGTGTGCCTCTCACAGCTTAACAGACCGCTGCTCCACAAAGAGGGGTAAA,Distal Intergenic,4,22117134,22117532,399,2,Gm11880-201,49979,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,11,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18463,cg16126692,-0.00000514,0.00000322,-1.597310591,0.111215287,loss,ns,0.00000355,0.00000547,0.649417823,0.516549221,pos,ns,0.001156532,0.001601886,0.721981488,0.470850093,pos,ns,0.32711734,-0.0000738,0.0000551,-1.339875232,0.181267229,neg,ns,0.938279006,Cnot1,Cnot1_Exon,8,95788669,95788718,95788717,95788718,50,-,GGTTAAATTGTCCACCAGGTAGCTGATTTGAGACAAGGCCAGCGAGAGCG,"Exon (Cnot1-202/Cnot1, exon 2 of 49)",8,95719451,95807462,88012,2,Cnot1-202,18744,Cnot1-202;Cnot1-201;Cnot1-203;Cnot1-216;Cnot1-217;Cnot1-207;Cnot1-209,Cnot1;Cnot1;Cnot1;Cnot1;Cnot1;Cnot1;Cnot1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,24,234594,ENSMUSG00000036550,conserved gene and region,8,95788711,95788768,58,*,58,7,0.672413793,1.16,0.120689655,0.00000369,CpGisland,TRUE,U10,Tr-S
27531,cg19175043,-0.00000142,0.00000058,-2.443641569,0.015097251,loss,ns,-0.00000064,0.000000985,-0.649416098,0.516550334,neg,ns,0.000335905,0.000288657,1.163679898,0.245448629,pos,ns,0.61003939,-0.00000603,0.00000993,-0.607561425,0.543923183,neg,ns,0.980511257,Zfp64,Zfp64_Intergenic_upstream,2,169216193,169216242,169216241,169216242,50,+,TATTGCCCATTGCGCATTTGACAAATTATTTACACATTTTAATAATTGCG,Distal Intergenic,2,168893331,168955587,62257,2,Zfp64-203,-260606,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,11,22722,ENSMUSG00000027551,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U14,Hc-H
19239,cg17035080,-0.0000272,0.0000117,-2.334012868,0.020233751,loss,ns,-0.0000129,0.0000198,-0.64937062,0.516579682,neg,ns,-0.012529235,0.005803441,-2.158932196,0.03162245,neg,ns,1.500004489,0.000297534,0.00019958,1.490800418,0.137030703,pos,ns,0.864422381,Kmt2d,Kmt2d_threeUTR,15,98832179,98832228,98832227,98832228,50,-,AAAATTAAAAACTGTATAAGGTTTCTTCACTAAATTCTACAGGACTATCG,3' UTR,15,98831669,98871183,39515,2,Kmt2d-202,38955,Kmt2d-202;Kmt2d-201;Kmt2d-204;Prkag1-201;Prkag1-206;Prkag1-203;Prkag1-205,Kmt2d;Kmt2d;Kmt2d;Prkag1;Prkag1;Prkag1;Prkag1,0;0;0;-658;-1208;-725;-691,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,16,381022,ENSMUSG00000048154,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
8528,cg05216621,0.000000847,0.000000344,2.464557289,0.014260353,gain,ns,-0.000000379,0.000000584,-0.649264386,0.516648242,neg,ns,0.00000256,0.000171147,0.014937915,0.98809132,pos,ns,0.005202916,0.000000361,0.00000589,0.061365289,0.95110784,pos,ns,0.010622887,Btrc,Btrc_Intron,19,45302354,45302403,45302354,45302355,50,+,CGGCGCCCCTCCATTATACGTTAATGTAATCAGCAGTGTGCGAAATGACT,"Intron (Gm28578-211/Gm28578-211, intron 1 of 1)",19,45363734,45507736,144003,1,Btrc-204,-61331,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,63,98,12234,ENSMUSG00000025217,mapped to different genes,19,45301752,45302408,657,*,657,54,0.611872146,0.882427559,0.082191781,2.09E-36,CpGisland,TRUE,U3,Pr-B
4600,cg15631634,-0.000000905,0.00000278,-0.325777299,0.744812645,loss,ns,-0.00000306,0.00000472,-0.649152919,0.516720184,neg,ns,0.000407922,0.001383121,0.29492853,0.768245893,pos,ns,0.114499753,0.000017,0.0000476,0.356773684,0.721503962,pos,ns,0.958295619,E2f3,E2f3_Exon,13,29918758,29918807,29918758,29918759,50,-,CGTATCATACCGCGTTTTTTCTGAGGGAGATTTTGGAGCTTAAAGAAAAA,"Exon (E2f3-203/E2f3, exon 3 of 7)",13,29906575,29984391,77817,2,E2f3-203,65584,E2f3-203;E2f3-204;E2f3-201;E2f3-202,E2f3;E2f3;E2f3;E2f3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,10,13557,ENSMUSG00000016477,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20629,cg22698853,0.0000415,0.0000095,4.365201775,0.0000173,gain,ns,0.0000105,0.0000161,0.648975439,0.516834742,pos,ns,0.007051768,0.004728224,1.491420096,0.136868103,pos,ns,0.863697751,-0.000119459,0.000162603,-0.734663326,0.463099921,neg,ns,0.583873518,Pou4f1,Pou4f1_Intergenic_downstream,14,104190721,104190770,104190769,104190770,50,+,AGCACCTAGCCTTTGTTTCAAGATGGTACCTGATCAATATCATCAATCCG,Distal Intergenic,14,104463973,104465365,1393,2,Pou4f1-202,274595,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,31,18996,ENSMUSG00000048349,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23302,cg17691889,-0.000012,0.00000331,-3.610624549,0.000356117,loss,ns,-0.00000365,0.00000562,-0.648934402,0.516861232,neg,ns,0.00277016,0.001647767,1.681159591,0.093739084,pos,ns,1.028079296,-0.00025169,0.0000567,-4.441595169,0.0000124,neg,ns,0.923120266,Eri3,Eri3_Intron,4,117665840,117665889,117665888,117665889,50,+,TAATGGGTGTGTAATGGCCTCATTTCCATGCCTGGCCTCCAGGAGCGGCG,"Intron (Eri3-201/Eri3, intron 8 of 8)",4,117550365,117674297,123933,1,Eri3-201,115475,Eri3-201;Eri3-206;Eri3-203,Eri3;Eri3;Eri3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,82,97,140546,ENSMUSG00000033423,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12915,cg01051653,-0.00000289,0.00000122,-2.37341137,0.018233966,loss,ns,-0.00000134,0.00000207,-0.648882557,0.5168947,neg,ns,-0.001161745,0.000605909,-1.917359937,0.056111053,neg,ns,1.25095158,0.0000139,0.0000208,0.66601472,0.505896987,pos,ns,0.029235232,Arid5b,Arid5b_Exon,10,68278053,68278102,68278053,68278054,50,-,CGGATCCTTTGGCGTACATCTTACAAAGAAAAAGTCGCCAAGGGACAAAA,Promoter (<=1kb),10,68092520,68278740,186221,2,Arid5b-204,638,Arid5b-204;Arid5b-201;Arid5b-202,Arid5b;Arid5b;Arid5b,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,33,71371,ENSMUSG00000019947,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
13419,cg25348281,-0.00000778,0.00000188,-4.125886848,0.0000475,loss,ns,-0.00000208,0.0000032,-0.648771553,0.516966361,neg,ns,-0.001094427,0.000938077,-1.166671388,0.244239798,neg,ns,0.612183568,0.000018,0.0000323,0.556997756,0.57793087,pos,ns,0.962268871,Gm7656,Gm7656_Intron,7,70433782,70433831,70433782,70433783,50,+,CGGAGTTTCTGTAATCTTTTCAGTGGGTGACAGAAATATGAGAAGCAAAT,"Intron (B130024G19Rik-205/B130024G19Rik-205, intron 2 of 3)",7,70490848,70491851,1004,1,Gm7656-201,-57017,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,4,665486,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19362,cg12597701,0.0000657,0.0000151,4.339803725,0.0000193,gain,ns,-0.0000167,0.0000257,-0.64870972,0.517006281,neg,ns,0.020909523,0.007530774,2.776543683,0.005828256,pos,ns,2.234461352,-0.000497375,0.000258983,-1.920494222,0.05571269,neg,ns,0.213739146,Foxp1,Foxp1_Intron,6,99099932,99099981,99099980,99099981,50,+,AATTGCTGTAATTGCTTGAAGATGTGCAGGCAGGTGAAACCTGATCCCCG,"Intron (Foxp1-206/Foxp1, intron 3 of 17)",6,98925338,99266515,341178,2,Foxp1-206,166534,Foxp1-206;Foxp1-204;Foxp1-220;Foxp1-201;Foxp1-205;Foxp1-207;Foxp1-208;Foxp1-226;Foxp1-228;Foxp1-221;Foxp1-222;Foxp1-218;Foxp1-223,Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,87,108655,ENSMUSG00000030067,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
11594,cg24033697,-0.00000539,0.00000256,-2.103450165,0.036231967,loss,ns,-0.00000282,0.00000435,-0.648674246,0.517029184,neg,ns,-0.002102996,0.001275364,-1.648938376,0.100173233,neg,ns,0.99924831,0.0000525,0.0000439,1.198067702,0.23180583,pos,ns,0.939662545,Pkp4,Pkp4_threeUTR,2,59352279,59352328,59352327,59352328,50,-,CCAATTTACATCAGTTCCTATTCCTCACCAGCAAGAGAACAAAATAGACG,3' UTR,2,59160850,59355204,194355,1,Pkp4-210,191429,Pkp4-210;Pkp4-202;Pkp4-211;Pkp4-201;Pkp4-203;Pkp4-209;Pkp4-206,Pkp4;Pkp4;Pkp4;Pkp4;Pkp4;Pkp4;Pkp4,0;0;0;0;0;0;10082,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,7,227937,ENSMUSG00000026991,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2144,cg11517403,0.0000127,0.0000052,2.447908544,0.01492307,gain,ns,0.00000573,0.00000884,0.648668442,0.517032931,pos,ns,0.004130878,0.002589383,1.595313544,0.111661072,pos,ns,0.952098207,-0.000185474,0.000089,-2.082843673,0.038084871,neg,ns,0.894705517,Cyp7b1,Cyp7b1_Intron,3,18081642,18081691,18081642,18081643,50,-,CGGTAGAGCAACATCTGTTTCTGTGCTAGTGCCGAACAAACAAGGCAATT,"Intron (Cyp7b1-201/Cyp7b1, intron 4 of 5)",3,18071950,18243338,171389,2,Cyp7b1-201,161647,Cyp7b1-201,Cyp7b1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,17,13123,ENSMUSG00000039519,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21773,cg16181022,0.0000283,0.0000079,3.579468693,0.000399457,gain,ns,0.00000871,0.0000134,0.64864822,0.517045987,pos,ns,0.008278577,0.00393295,2.104928265,0.036102078,pos,ns,1.442467801,-0.000180228,0.000135254,-1.332514796,0.183669715,neg,ns,0.770037832,Begain,Begain_Exon,12,109035334,109035383,109035382,109035383,50,-,CACCTTGTGGACCCTGCCGTAGGTCTGGCTGCACTGCAGCAGCTGGGCCG,"Exon (Begain-204/Begain, exon 6 of 7)",12,109032187,109059427,27241,2,Begain-204,24044,Begain-204;Begain-203;Begain-206;Begain-205;Begain-202;Begain-201,Begain;Begain;Begain;Begain;Begain;Begain,0;0;0;0;0;18198,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,380785,ENSMUSG00000040867,conserved gene and region,12,109035178,109035383,206,*,206,13,0.703883495,0.541010101,0.063106796,9.42E-08,CpGisland,TRUE,U11,Tr-P
13352,cg27311945,0.00000476,0.00000725,0.656573156,0.511942499,gain,ns,-0.00000799,0.0000123,-0.648452605,0.517172293,neg,ns,-0.009918948,0.003610502,-2.747248636,0.006361396,neg,ns,2.196447544,0.000305697,0.000124165,2.462021128,0.014359592,pos,ns,0.871436129,Nr2f2,Nr2f2_Intron,7,70290898,70290947,70290946,70290947,50,-,TACCATTTCTTTCCCATTTTTTGGCCAGAAGGTCATGTGCAAATTGAACG,"Intron (Gm29683-202/Gm29683-202, intron 1 of 3)",7,70353074,70355237,2164,2,Nr2f2-203,64339,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,69,11819,ENSMUSG00000030551,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13023,cg25048198,0.0000205,0.00000358,5.727048092,2.42E-08,gain,yes,-0.00000394,0.00000608,-0.648392075,0.517211379,neg,ns,0.007894542,0.001780323,4.434332641,0.0000128,pos,ns,4.8914682,-0.000223637,0.0000612,-3.652705323,0.00030456,neg,ns,0.05120387,Rhobtb1,Rhobtb1_fiveUTR,10,69212640,69212689,69212688,69212689,50,-,CAGCTGGGCTCGGTTTTGAAACAAAAGCCAATGTCCTCCCTCGGAGTCCG,Promoter (<=1kb),10,69212657,69273527,60871,1,Rhobtb1-207,0,A930033H14Rik-201;Rhobtb1-209;Rhobtb1-205;Rhobtb1-201;Rhobtb1-207;Rhobtb1-210;Rhobtb1-203;Rhobtb1-206;Rhobtb1-202;Rhobtb1-211,A930033H14Rik;Rhobtb1;Rhobtb1;Rhobtb1;Rhobtb1;Rhobtb1;Rhobtb1;Rhobtb1;Rhobtb1;Rhobtb1,0;0;0;0;0;0;-395;-482;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,3,69288,ENSMUSG00000019944,conserved gene but different region,10,69212404,69212734,331,*,331,19,0.682779456,0.493913453,0.057401813,2.26E-10,CpGisland,TRUE,NA,NRS
26092,cg01657423,-0.00000299,0.0000041,-0.728258481,0.467005113,loss,ns,0.00000452,0.00000697,0.648372297,0.517224151,pos,ns,-0.004023924,0.00204137,-1.971188367,0.049591502,neg,ns,1.304592737,0.000105893,0.0000702,1.508395855,0.132471694,pos,ns,0.874033889,Sox5,Sox5_Intron,6,143859862,143859911,143859862,143859863,50,+,CGATGTGAATGACTGATCTGTAACCACAGCTAAACAGCACGCTGCTTAGG,"Intron (Sox5-201/Sox5, intron 11 of 14)",6,143828425,144209480,381056,2,Sox5-201,349569,Sox5-201;Sox5-214;Sox5-205;Sox5-204;Sox5-202;Sox5-203;Sox5-209;Sox5-211;Sox5-206,Sox5;Sox5;Sox5;Sox5;Sox5;Sox5;Sox5;Sox5;Sox5,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,71,20678,ENSMUSG00000041540,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17956,cg14044498,0.0000338,0.0000163,2.072468074,0.039048085,gain,ns,-0.000018,0.0000277,-0.648371266,0.517224817,neg,ns,-0.01797923,0.008117735,-2.214808576,0.027500081,neg,ns,1.560666025,0.000731483,0.000279168,2.620224191,0.009219888,pos,ns,0.737559846,Mmp2,Mmp2_Intergenic_upstream,8,92801633,92801682,92801633,92801634,50,-,CGACGTGAATGAAGCCTCATTTCTGGCCTTGAGGAGCTTAAGATGTATGT,Distal Intergenic,8,92827291,92853420,26130,1,Mmp2-201,-25658,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,4,17390,ENSMUSG00000031740,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16405,cg09208725,0.0000181,0.00000606,2.982340087,0.003087465,gain,ns,-0.00000668,0.0000103,-0.648349748,0.517238713,neg,ns,-0.001389522,0.003017947,-0.460419778,0.645537737,neg,ns,0.190078365,0.0000113,0.000103787,0.109118711,0.913178933,pos,ns,0.583850255,Ltbp2,Ltbp2_Exon,12,84868676,84868725,84868676,84868677,50,+,CGTTTGATACAGTGGTTGGTGCTGTTTGCTGTTGTCCATCCTGGGCAGCA,"Exon (Ltbp2-201/Ltbp2, exon 2 of 36)",12,84783212,84876532,93321,2,Ltbp2-201,7807,Ltbp2-201;Ltbp2-202;Ltbp2-203;Ltbp2-207,Ltbp2;Ltbp2;Ltbp2;Ltbp2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,16997,ENSMUSG00000002020,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9793,cg04829863,0.0000399,0.00000922,4.320371607,0.000021,gain,ns,-0.0000102,0.0000157,-0.648336352,0.517247363,neg,ns,0.004376265,0.004591218,0.953181663,0.34124066,pos,ns,0.466939226,-0.000132388,0.000157892,-0.838476092,0.402409417,neg,ns,0.047061842,Trps1,Trps1_Promoter,15,50889457,50889506,50889505,50889506,50,+,TTTTTCAAAGAAAGTCACTTTTAATTCCCAGGGCTCCCCGCTCGCGATCG,Promoter (<=1kb),15,50654752,50889691,234940,2,Trps1-202,185,Trps1-202;Trps1-206;Trps1-204;Trps1-205;Trps1-201;Trps1-208,Trps1;Trps1;Trps1;Trps1;Trps1;Trps1,0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,9,36,83925,ENSMUSG00000038679,conserved gene and region,15,50889495,50889675,181,*,181,26,0.718232044,1.135617761,0.143646409,1.20E-24,CpGisland,TRUE,U1,Pr-A
1140,cg14677990,0.0000204,0.0000187,1.09171741,0.275805073,gain,ns,0.0000206,0.0000318,0.64831614,0.517260416,pos,ns,-0.005854528,0.009319051,-0.628232233,0.530314372,neg,ns,0.275466603,-0.000185492,0.000320481,-0.578791872,0.5631499,neg,ns,0.534578383,Rpl23a-ps13,Rpl23a-ps13_Intergenic_upstream,X,11797950,11797999,11797998,11797999,50,+,TTCCGAAAGCTTTGCTCAGTGAGTTTAAACAGCATCTCACAGCATGGCCG,Distal Intergenic,20,11867265,11867705,441,1,Rpl23a-ps13-201,-69266,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,13,14,628338,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
15104,cg22533021,-0.00000959,0.00000344,-2.783728609,0.005703837,loss,ns,0.00000379,0.00000585,0.648263696,0.517294284,pos,ns,0.001073519,0.001714588,0.626108982,0.531704185,pos,ns,0.274329921,-0.00011813,0.000059,-2.003402091,0.046004229,neg,ns,0.933786809,Zfp827,Zfp827_Exon,8,79186300,79186349,79186300,79186301,50,+,CGAACAGCTGCTGGAGCATAAGAAATGCCACACTGTCCCCACCGGTGGGC,"Exon (Zfp827-202/Zfp827, exon 13 of 15)",8,79028437,79193743,165307,1,Zfp827-202,157863,Zfp827-202;Zfp827-203;Zfp827-209;Zfp827-206;Zfp827-205;Zfp827-207;Zfp827-204,Zfp827;Zfp827;Zfp827;Zfp827;Zfp827;Zfp827;Zfp827,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,28,622675,ENSMUSG00000071064,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21803,cg12579750,0.0000175,0.00000493,3.562106973,0.00042571,gain,ns,0.00000542,0.00000837,0.648056834,0.517427886,pos,ns,0.008335133,0.002451325,3.400256601,0.000761369,pos,ns,3.118404716,-0.00019062,0.0000843,-2.261192944,0.024440143,neg,ns,0.122168664,Lmo1,Lmo1_Promoter,7,109175480,109175529,109175528,109175529,50,+,CAGAGGTGCCCGCCATTAGCTTATTTAACTCCAAGGACACTAATTACCCG,Promoter (<=1kb),7,109138675,109175207,36533,2,Lmo1-202,-273,Lmo1-201;Lmo1-202;Lmo1-203,Lmo1;Lmo1;Lmo1,0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,4,66,109594,ENSMUSG00000036111,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
4740,cg26749175,0.0000276,0.00000694,3.972263998,0.0000886,gain,ns,-0.00000764,0.0000118,-0.648044778,0.517435672,neg,ns,0.003726117,0.003455772,1.078229772,0.2817695,pos,ns,0.550106019,0.0000151,0.000118844,0.127325813,0.898765081,pos,ns,0.095797698,Cacna1d,Cacna1d_fiveUTR,14,30352962,30353011,30353010,30353011,50,-,CATTTTTTTCATCATCATCATCATCATCATCCACGAACATTTATTGAGCG,Promoter (<=1kb),14,30042073,30352991,310919,2,Cacna1d-204,0,Cacna1d-202;Cacna1d-201;Cacna1d-208;Cacna1d-209;Cacna1d-214;Cacna1d-204;Cacna1d-207;Cacna1d-218;Cacna1d-216;Cacna1d-205,Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,26,12289,ENSMUSG00000015968,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
22918,cg02056765,0.0000365,0.0000308,1.185929729,0.23655823,gain,ns,0.0000339,0.0000523,0.648002378,0.517463059,pos,ns,-0.022571863,0.015329822,-1.472415217,0.141923303,neg,ns,0.847946289,0.001337309,0.000527191,2.536666563,0.011681641,pos,ns,0.600847731,Gm5357,Gm5357_Intergenic_upstream,8,116165107,116165156,116165155,116165156,50,-,GATTGTTTTTCTCTCGCAGTAGCCTGCTGCTACAAGAATTAAAACTGTCG,Distal Intergenic,8,116489186,116491109,1924,1,Gm5357-201,-324079,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,15,15,384868,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23779,cg07576559,-0.00005,0.00000799,-6.251019028,1.35E-09,loss,yes,0.0000088,0.0000136,0.647886988,0.517537594,pos,ns,-0.00581121,0.003978449,-1.460672387,0.145118129,neg,ns,0.838278329,-0.0000409,0.000136819,-0.298934517,0.765190306,neg,ns,0.893399045,Gm18384,Gm18384_Intergenic_downstream,3,120335837,120335886,120335837,120335838,50,+,CGACAATTTGTGAAAGAAGAGACCAGAAATCAGTCTAATTACCAGAGTGC,Distal Intergenic,3,119968731,119969538,808,1,Gm18384-201,367106,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,5,100417046,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2093,cg07097963,-0.0000172,0.00000232,-7.426107007,1.09E-12,loss,yes,-0.00000255,0.00000394,-0.647871446,0.517547634,neg,ns,-0.001332414,0.001154374,-1.154230622,0.249294661,neg,ns,0.603287023,-0.0000113,0.0000397,-0.285851033,0.775183134,neg,ns,0.945816841,Skida1,Skida1_Exon,2,18045803,18045852,18045851,18045852,50,-,TGAAATGGCCTTTTCACTGCTGATGCTACATTGCTGGCTACCTTTTTGCG,"Exon (Skida1-202/Skida1, exon 2 of 2)",2,18044083,18049051,4969,2,Skida1-202,3199,Skida1-205;Skida1-202;Skida1-201;Skida1-203;Skida1-204,Skida1;Skida1;Skida1;Skida1;Skida1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,31,72668,ENSMUSG00000054074,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18660,cg22012813,-0.00000312,0.00000128,-2.445222543,0.015032506,loss,ns,-0.00000141,0.00000217,-0.647847815,0.517562899,neg,ns,0.000179658,0.000635856,0.282545525,0.7777138,pos,ns,0.109180195,-0.0000317,0.0000219,-1.450897533,0.147819513,neg,ns,0.035991387,Btg1,Btg1_fiveUTR,10,96617318,96617367,96617318,96617319,50,-,CGCCCCCATGCATCCCTTCTACACCCGGGCCGCCACCATGATAGGCGAGA,Promoter (<=1kb),10,96617006,96622809,5804,1,Btg1-201,312,Btg1-201;Btg1-202,Btg1;Btg1,0;-187,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,2,12226,ENSMUSG00000036478,mapped to different genes,10,96617204,96617428,225,*,225,33,0.755555556,1.060714286,0.146666667,1.46E-31,CpGisland,TRUE,U1,Pr-A
19427,cg16927890,-0.0000147,0.00000495,-2.971285053,0.003197569,loss,ns,-0.00000544,0.0000084,-0.647813184,0.51758527,neg,ns,-0.005377379,0.002461269,-2.184799326,0.029652143,neg,ns,1.527943919,0.0000131,0.0000846,0.154555757,0.877272126,pos,ns,0.890557662,Gm12689,Gm12689_Promoter,4,99295088,99295137,99295088,99295089,50,+,CGTCATGAGGCTAGTTAGAGGGGTCTTTAAGCATGATTTAATATGTCCAT,Promoter (<=1kb),4,99295900,99297258,1359,1,Gm12689-201,-763,Gm12689-201,Gm12689,-763,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,7,26,100137011,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11845,cg26547442,0.000016,0.00000568,2.809026306,0.005284689,gain,ns,0.00000625,0.00000965,0.647736389,0.517634881,pos,ns,0.005872606,0.002826458,2.077726541,0.03855735,pos,ns,1.413892821,-0.000130164,0.0000972,-1.339113304,0.181514834,neg,ns,0.911857963,Tle3,Tle3_Exon,9,61145062,61145111,61145110,61145111,50,-,TGCTAATTGCCTGTTAGGTGATTAATAAGCTTACAGCAGATGCTAATGCG,"Exon (I730028E13Rik-201/I730028E13Rik-201, exon 3 of 3)",9,61372366,61418497,46132,1,Tle3-218,-227304,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,30,21887,ENSMUSG00000032280,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19499,cg06102712,0.00000286,0.000013,0.220122179,0.825920888,gain,ns,0.0000143,0.0000221,0.647735761,0.517635286,pos,ns,0.022912551,0.006470821,3.540903237,0.000459968,pos,ns,3.337272056,-0.000935136,0.000222531,-4.202271463,0.0000346,neg,ns,0.344617844,Gm12684,Gm12684_Intergenic_upstream,4,99459648,99459697,99459648,99459649,50,+,CGGCAATGCAGTCTCTCACAAAAAGCATTTATCACTGGGCAGGCACAGTA,Distal Intergenic,4,99430256,99431254,999,2,Gm12684-201,-28394,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,8,665212,NA,mapped to different genes,4,99459453,99459684,232,*,232,12,0.504310345,0.813559322,0.051724138,0.00000273,CpGisland,TRUE,U15,NS
10580,cg15689693,0.00000165,0.00000178,0.926744541,0.354780117,gain,ns,0.00000195,0.00000302,0.647684264,0.517668555,pos,ns,0.001071651,0.000883548,1.212895366,0.226093268,pos,ns,0.645712368,-0.0000532,0.0000304,-1.751979017,0.080766185,neg,ns,0.950326065,Gm6218,Gm6218_Intergenic_upstream,12,54534095,54534144,54534143,54534144,50,-,TACCACAGTACCAGATTCTATTACACACATATTTTTGCTAGAGGTTTACG,Distal Intergenic,12,54622590,54623217,628,1,Gm6218-201,-88495,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,621363,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7805,cg19464362,-0.0000134,0.00000401,-3.336994518,0.000949973,loss,ns,0.00000441,0.00000682,0.647625274,0.517706666,pos,ns,-0.001627876,0.001996926,-0.815190829,0.415588935,neg,ns,0.381336024,-0.0000276,0.0000687,-0.402402333,0.687665283,neg,ns,0.934072975,Gm12455,Gm12455_Intergenic_downstream,4,44392546,44392595,44392594,44392595,50,+,GCAGCCAACTTTGTCAAGTATTTTTAGTTCCCTCTGGTCTTATTGGTCCG,Distal Intergenic,4,44382922,44383337,416,1,Gm12455-201,9624,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,15,15,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2406,cg00314427,0.000108884,0.0000151,7.190760767,4.85E-12,gain,yes,-0.0000167,0.0000257,-0.647622265,0.51770861,neg,ns,0.017095637,0.00753644,2.268396856,0.023992532,pos,ns,1.619923913,0.00012438,0.000259178,0.479900917,0.631636272,pos,ns,0.192523669,Fosb,Fosb_threeUTR,7,19304990,19305039,19304990,19304991,50,-,CGAGGACTTGAACTTCACTGTGTGTAAAGAGAGAAGCCGTCAGGTTGGGG,3' UTR,7,19302696,19310051,7356,2,Fosb-201,5012,Fosb-201;Fosb-202;Fosb-203;Fosb-205;Fosb-207;Fosb-206;Fosb-204,Fosb;Fosb;Fosb;Fosb;Fosb;Fosb;Fosb,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,13,14282,ENSMUSG00000003545,mapped to different genes,7,19304862,19305262,401,*,401,35,0.648379052,0.848600278,0.087281796,9.48E-25,CpGisland,TRUE,U3,Pr-B
23815,cg15806013,0.0000593,0.00000949,6.246980245,1.38E-09,gain,yes,0.0000104,0.0000161,0.647599116,0.517723566,pos,ns,0.005184331,0.004722277,1.097845608,0.273123896,pos,ns,0.563640302,-0.000210315,0.000162399,-1.295051368,0.196266161,neg,ns,0.681100284,Galnt2l,Galnt2l_Intron,8,120450059,120450108,120450107,120450108,50,-,AACTGTCGGGGCTGAACTTAAATTTCCTATCTGGACAGAAGTGTCACCCG,"Intron (Galnt2l-201/Galnt2l, intron 1 of 15)",8,119910841,124345722,4434882,1,Galnt2l-201,539218,Galnt2l-201;Gse1-206,Galnt2l;Gse1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,28,,NA,mapped to different genes,8,120450107,120450284,178,*,178,14,0.488764045,1.321314952,0.078651685,1.48E-09,CpGisland,TRUE,U11,Tr-P
19581,cg26334230,-0.00000288,0.00000182,-1.58205229,0.114657312,loss,ns,-0.000002,0.00000309,-0.647595308,0.517726026,neg,ns,-0.000396371,0.000906174,-0.437411412,0.66211758,neg,ns,0.179064881,-0.0000295,0.0000312,-0.947669029,0.344036109,neg,ns,0.953293714,Hnrnpd,Hnrnpd_threeUTR,5,99962070,99962119,99962118,99962119,50,-,TGATACAGGATGTTGGAAGAGACCATACCAAACGGCAGCATTCGAGAGCG,3' UTR,5,99955935,99978938,23004,2,Hnrnpd-211,16819,Hnrnpd-211;Hnrnpd-201;Hnrnpd-203;Hnrnpd-202;Hnrnpd-208;Hnrnpd-209;Hnrnpd-204;Hnrnpd-205;Hnrnpd-206;Hnrnpd-210,Hnrnpd;Hnrnpd;Hnrnpd;Hnrnpd;Hnrnpd;Hnrnpd;Hnrnpd;Hnrnpd;Hnrnpd;Hnrnpd,0;0;0;0;0;0;0;0;4268;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,8,11991,ENSMUSG00000000568,conserved gene and region,5,99962102,99962210,109,*,109,11,0.614678899,1.07437276,0.100917431,9.65E-09,CpGisland,TRUE,U10,Tr-S
2074,cg26664145,-0.0000942,0.0000186,-5.058796239,0.000000724,loss,yes,0.0000205,0.0000316,0.647382776,0.51786335,pos,ns,0.037346146,0.009266431,4.03026214,0.0000702,pos,ns,4.153873998,-0.002108808,0.000318672,-6.617490723,1.61E-10,neg,yes,0.439344461,Gm19175,Gm19175_Intergenic_upstream,3,17862560,17862609,17862608,17862609,50,+,TTCTTTCCACATTTCTGGCACACGTACATCTTAAACAAACAGGAATTGCG,Distal Intergenic,3,17923708,17924623,916,1,Gm19175-201,-61099,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,100418385,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1888,cg10668528,-0.0000606,0.00000959,-6.318409299,9.17E-10,loss,yes,0.0000105,0.0000163,0.647371416,0.517870691,pos,ns,-0.007763644,0.004772686,-1.626682246,0.104820617,neg,ns,0.979553288,0.000124179,0.000164132,0.756576066,0.449878473,pos,ns,0.833748002,B230303A05Rik,B230303A05Rik_Exon,13,16017325,16017374,16017373,16017374,50,-,GTTGGCAAGTTGCTGGATTATAGTGAGGAGTTCCCCCACCCCAGGATCCG,"Exon (Inhba-201/Inhba, exon 4 of 5)",13,15813548,16023360,209813,2,B230303A05Rik-201,5986,B230303A05Rik-201;B230303A05Rik-204;Inhba-201;Inhba-202,B230303A05Rik;B230303A05Rik;Inhba;Inhba,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,6,100503142,ENSMUSG00000113701,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11788,cg00124810,-0.000021,0.0000084,-2.502948682,0.012830649,loss,ns,-0.00000924,0.0000143,-0.647275356,0.517932765,neg,ns,-0.000609907,0.004181944,-0.145842985,0.884140128,neg,ns,0.053478898,-0.000207904,0.000143817,-1.445616659,0.149294916,neg,ns,0.772202486,Mbnl1,Mbnl1_Exon,3,60615640,60615689,60615688,60615689,50,-,TCCCCCATTACCAAAGAGGCCTGCTCTTGAAAAAACCAACGGTGCCACCG,"Exon (Mbnl1-216/Mbnl1, exon 6 of 7)",3,60473074,60621458,148385,1,Mbnl1-216,142566,Mbnl1-216;Mbnl1-211;Mbnl1-201;Mbnl1-202;Mbnl1-203;Mbnl1-218;Mbnl1-219;Mbnl1-214;Mbnl1-207;Mbnl1-205;Mbnl1-212;Mbnl1-210;Mbnl1-215;Mbnl1-223;Mbnl1-206,Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1,0;0;0;0;0;0;0;0;0;0;0;19999;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,19,36,56758,ENSMUSG00000027763,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10304,cg27204141,-0.0000188,0.0000105,-1.795522409,0.073544323,loss,ns,0.0000115,0.0000178,0.647221593,0.517967508,pos,ns,-0.007663062,0.005207899,-1.471430495,0.14218911,neg,ns,0.847133664,0.000144592,0.000179099,0.807327804,0.420096649,pos,ns,0.715271718,Gpc3,Gpc3_Intergenic_upstream,X,52627632,52627681,52627632,52627633,50,+,CGAGTTGAATTCAGACAACCATCCAATTAGTTGATTTCAAAATGCCTGTT,Distal Intergenic,20,52387664,52613950,226287,2,Gpc3-202,-13682,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,7,14734,ENSMUSG00000055653,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17093,cg11901035,0.00000181,0.00000133,1.361042416,0.174488843,gain,ns,-0.00000146,0.00000226,-0.647159907,0.518007373,neg,ns,-0.000333121,0.000661341,-0.50370511,0.614826369,neg,ns,0.211247515,0.000023,0.0000227,1.0134317,0.311644324,pos,ns,0.97139965,Msi2,Msi2_Intron,11,88349381,88349430,88349381,88349382,50,-,CGTTGAGACAGCATTCACATCCCATGCAAACTACAAAGGAACTAGTTTTA,"Intron (Msi2-203/Msi2, intron 11 of 13)",11,88339382,88718229,378848,2,Msi2-203,368799,Msi2-203;Msi2-201,Msi2;Msi2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,21,36,76626,ENSMUSG00000069769,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
129,cg05401971,-0.00000114,0.00000233,-0.490854644,0.623876544,loss,ns,-0.00000256,0.00000395,-0.647158324,0.518008396,neg,ns,0.000483098,0.001158582,0.416973562,0.67698634,pos,ns,0.169420094,-0.0000495,0.0000398,-1.241694064,0.215288104,neg,ns,0.93390524,Kdm2a,Kdm2a_Exon,19,4324373,4324422,4324421,4324422,50,+,CAAAGTTCTCTGCGGCTGAGGTAGCGGAAGACAGACATCCAGACCTCCCG,"Exon (Kdm2a-201/Kdm2a, exon 17 of 21)",19,4314419,4398285,83867,2,Kdm2a-201,73863,Kdm2a-201;Kdm2a-202;Kdm2a-213;Kdm2a-211;Kdm2a-207;Kdm2a-214;Kdm2a-212;Kdm2a-210,Kdm2a;Kdm2a;Kdm2a;Kdm2a;Kdm2a;Kdm2a;Kdm2a;Kdm2a,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,21,30,225876,ENSMUSG00000054611,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12097,cg16888523,-0.00000118,0.00000498,-0.235911068,0.813657463,loss,ns,-0.00000548,0.00000847,-0.647143685,0.518017857,neg,ns,-0.001272086,0.002480033,-0.512931102,0.608364828,neg,ns,0.215835902,-0.0000215,0.0000853,-0.252360066,0.800930004,neg,ns,0.135584161,Tet1,Tet1_Exon,10,62865176,62865225,62865224,62865225,50,-,CTTAAAGTCTGTCTTAATTAGCCTCTGCATTCTTCACAGCGAAGCCCACG,"Exon (Tet1-202/Tet1, exon 1 of 3)",10,62804570,62880014,75445,2,Tet1-201,14789,Tet1-201;Tet1-206;Tet1-202,Tet1;Tet1;Tet1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,5,52463,ENSMUSG00000047146,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6553,cg02349142,-0.000000958,0.00000453,-0.211582935,0.832571456,loss,ns,-0.00000498,0.00000769,-0.647114374,0.5180368,neg,ns,-0.003687669,0.002254163,-1.635937126,0.102867595,neg,ns,0.987721416,0.0000949,0.0000775,1.223691608,0.221997862,pos,ns,0.880680324,Zfp536,Zfp536_Intron,7,37689692,37689741,37689740,37689741,50,-,AATTTTCCCCTGTCAATCAATTCTGCATGTCTGCATGAAACCGATGATCG,"Intron (Zfp536-202/Zfp536, intron 3 of 6)",7,37479104,37769624,290521,2,Zfp536-202,79883,Zfp536-202;Zfp536-201;Zfp536-203;Zfp536-206;Zfp536-209;Zfp536-208,Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,73,112,243937,ENSMUSG00000043456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21701,cg05412840,-0.00000217,0.00000613,-0.354392626,0.723285605,loss,ns,0.00000674,0.0000104,0.646928408,0.518156995,pos,ns,0.007647402,0.003052144,2.505583194,0.012737382,pos,ns,1.894919819,-0.000243237,0.000104963,-2.317354989,0.021135522,neg,ns,0.906301736,Zfhx3,Zfhx3_Intron,8,108908556,108908605,108908556,108908557,50,-,CGAATGAAAAATCAATACATTTTTCTGGGTTATACATATTCAGAACAGGC,"Intron (Zfhx3-204/Zfhx3, intron 10 of 15)",8,107942644,108961630,1018987,1,Zfhx3-204,965912,Zfhx3-204;Zfhx3-201,Zfhx3;Zfhx3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,114,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24243,cg23755537,0.0000113,0.00000913,1.23833581,0.216528502,gain,ns,0.00001,0.0000155,0.646898186,0.51817653,pos,ns,-0.007758771,0.00454457,-1.707261587,0.088774709,neg,ns,1.051710741,0.000423573,0.000156287,2.710221368,0.007098192,pos,ns,0.738034426,Gm12902,Gm12902_Intergenic_downstream,4,124150572,124150621,124150572,124150573,50,+,CGGTGATTATTTCTCCATTGCCATAAAGAATGTAAAGGAGATGGGAAAAA,Distal Intergenic,4,123926234,123926555,322,1,Gm12902-201,224338,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,34,34,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6895,cg24020597,-0.00000727,0.00000192,-3.791393214,0.000180033,loss,ns,0.00000211,0.00000326,0.646826956,0.518222572,pos,ns,-0.000315794,0.000954626,-0.330803373,0.741016491,neg,ns,0.130172127,-0.0000277,0.0000328,-0.844517464,0.399031573,neg,ns,0.964799564,Rims2,Rims2_Exon,15,39345334,39345383,39345334,39345335,50,+,CGAAAACAACAAGAAATCCTCACTAAATCAGGAGCATGGTTTTATAATAG,"Exon (Rims2-202/Rims2, exon 5 of 27)",15,39198332,39681940,483609,1,Rims2-202,147002,Rims2-202;Rims2-205;Rims2-201,Rims2;Rims2;Rims2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,16,19,116838,ENSMUSG00000037386,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6144,cg26978711,0.00000846,0.00000662,1.277306675,0.202449801,gain,ns,0.00000728,0.0000113,0.646763799,0.518263398,pos,ns,-0.002683348,0.003296097,-0.814098727,0.416213293,neg,ns,0.380684053,0.000173782,0.000113353,1.533109306,0.126268807,pos,ns,0.776138523,Tenm2,Tenm2_Exon,11,36139732,36139781,36139732,36139733,50,-,CGTGAGTGCCACAGTCTACTGAGCACACTTCTGGAAGAAAAACAATGATT,"Exon (Tenm2-202/Tenm2, exon 14 of 31)",11,36006656,37235882,1229227,2,Tenm2-202,1096101,Tenm2-202;Tenm2-208;Tenm2-201;Tenm2-204;Tenm2-205,Tenm2;Tenm2;Tenm2;Tenm2;Tenm2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,21,84,23964,ENSMUSG00000049336,conserved gene and region,11,36139608,36139733,126,*,126,10,0.642857143,0.782608696,0.079365079,0.000000572,CpGisland,TRUE,U15,NS
226,cg01200904,-0.000000231,0.000000211,-1.090699338,0.276252236,loss,ns,-0.000000232,0.000000359,-0.646678033,0.518318842,neg,ns,-0.000251391,0.000105254,-2.388416771,0.017519327,neg,ns,1.756482578,0.00000689,0.00000362,1.903484792,0.057903303,pos,ns,0.993912701,Gm21992,Gm21992_threeUTR,19,4801642,4801691,4801690,4801691,50,+,GGTAATCATTATAGGAGCCCGAATAGCGTGCGTAATCGGAATGGGCATCG,3' UTR,19,4742913,4811612,68700,2,Gm21992-203,9921,Gm21992-203;Gm21992-206;Gm21992-204;Gm21992-201;Gm21992-205;Gm21992-202;Rbm14-201;Rbm14-202;Rbm14-203,Gm21992;Gm21992;Gm21992;Gm21992;Gm21992;Gm21992;Rbm14;Rbm14;Rbm14,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,21,48,102902673,ENSMUSG00000096370,mapped to different genes,19,4801605,4801812,208,*,208,24,0.586538462,1.371428571,0.115384615,3.42E-20,CpGisland,TRUE,U10,Tr-S
14229,cg12285768,-0.0000319,0.00000844,-3.777713468,0.000189749,loss,ns,0.00000927,0.0000143,0.646605588,0.518365677,pos,ns,0.006278048,0.004201015,1.494412263,0.136085081,pos,ns,0.866189485,-0.000128321,0.000144473,-0.888206722,0.3751182,neg,ns,0.826847115,Onecut1,Onecut1_Exon,9,74855004,74855053,74855052,74855053,50,+,TGGATTTGCTTTTAATTCATATTTAAAGCTGCAACCGGCTCAGTGGAGCG,Promoter (6-7kb),9,74861921,74891781,29861,1,Onecut1-201,-6868,NA,NA,NA,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,16,28,15379,ENSMUSG00000043013,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
17131,cg15912062,-0.0000967,0.0000198,-4.877776832,0.00000172,loss,yes,0.0000218,0.0000337,0.646594492,0.51837285,pos,ns,0.038507094,0.009865451,3.9032267,0.000116484,pos,ns,3.933732453,-0.001002441,0.000339272,-2.954681558,0.003369702,neg,ns,0.810940276,Kbtbd12,Kbtbd12_Exon,6,88611413,88611462,88611413,88611414,50,-,CGATCAGGTTCTTCATCAGGAAGATCCATCTGTATGAAATATGACAGCCA,"Exon (Kbtbd12-202/Kbtbd12, exon 4 of 6)",6,88545114,88627442,82329,2,Kbtbd12-202,15980,Kbtbd12-202;Kbtbd12-206;Kbtbd12-203;Kbtbd12-207,Kbtbd12;Kbtbd12;Kbtbd12;Kbtbd12,0;0;15986;7060,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,74589,ENSMUSG00000033182,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3278,cg14792778,0.00000603,0.00000444,1.359812734,0.174877348,gain,ns,0.00000487,0.00000754,0.646553228,0.518399528,pos,ns,0.000688483,0.002208209,0.31178344,0.755414696,pos,ns,0.12181457,-0.00000894,0.0000759,-0.117773628,0.906323297,neg,ns,0.888210174,Cdh18,Cdh18_Exon,15,23460294,23460343,23460342,23460343,50,-,GTTTTGCTTATGTCTATCATAGATAACACAGCCAGCATTCTGACAAGGCG,"Exon (Cdh18-203/Cdh18, exon 11 of 12)",15,23036463,23474418,437956,1,Cdh18-203,423831,Cdh18-203;Cdh18-204;Cdh18-207;Cdh18-205,Cdh18;Cdh18;Cdh18;Cdh18,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,4,320865,ENSMUSG00000040420,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11553,cg08232037,0.000097,0.00000817,11.87439558,4.67E-27,gain,yes,-0.00000897,0.0000139,-0.646544048,0.518405463,neg,ns,0.014173381,0.004066073,3.48576617,0.000561538,pos,ns,3.25062089,-0.000121686,0.000139832,-0.870228743,0.384848754,neg,ns,0.177496022,Vax1,Vax1_Promoter,19,59171208,59171257,59171256,59171257,50,+,CAGTAATCCAATAAGAGCATTGATTAGGCTACAATGATTCAATTCAAGCG,Promoter (1-2kb),19,59166187,59170056,3870,2,Vax1-201,-1152,Vax1-201;Vax1-202,Vax1;Vax1,0;-4228,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,12,18,22326,ENSMUSG00000006270,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
16089,cg27572510,0.000000553,0.00000111,0.495910028,0.620309285,gain,ns,-0.00000122,0.00000189,-0.64652218,0.518419601,neg,ns,0.001073067,0.000554893,1.933828076,0.054044341,pos,ns,1.267249771,-0.0000574,0.0000191,-3.0062024,0.002861551,neg,ns,0.970544943,Acaca,Acaca_Intron,11,84376552,84376601,84376552,84376553,50,+,CGGAAGGCTATTCAGCATAATGCAAAATTAAATTATAAAAACTGGCTGAA,"Intron (Acaca-202/Acaca, intron 50 of 55)",11,84173122,84401651,228530,1,Acaca-202,203430,Acaca-202;Acaca-201,Acaca;Acaca,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,28,28,107476,ENSMUSG00000020532,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18107,cg08030302,0.00000419,0.00000381,1.100257982,0.272073376,gain,ns,-0.00000418,0.00000647,-0.646421859,0.518484464,neg,ns,0.000222829,0.001896197,0.117513451,0.906529286,pos,ns,0.042618161,0.0000179,0.0000652,0.274588557,0.783815258,pos,ns,0.930670023,Pcdh9,Pcdh9_Exon,14,93888254,93888303,93888254,93888255,50,+,CGGCTGTTGATCAAAGTGTTTTCTGGAATGGAAATATTGATGACAGGAGA,"Exon (Pcdh9-208/Pcdh9, exon 2 of 5)",14,93013410,93890669,877260,2,Pcdh9-208,2366,Pcdh9-208;Pcdh9-204;Pcdh9-202;Pcdh9-207;Pcdh9-201;Pcdh9-206;Pcdh9-203;Pcdh9-205,Pcdh9;Pcdh9;Pcdh9;Pcdh9;Pcdh9;Pcdh9;Pcdh9;Pcdh9,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,10,211712,ENSMUSG00000055421,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24075,cg02010334,0.0000293,0.000012,2.434878098,0.015460633,gain,ns,0.0000132,0.0000204,0.646312167,0.518555391,pos,ns,-0.002078843,0.005987504,-0.347196965,0.728678939,neg,ns,0.137463782,0.000378938,0.00020591,1.840310985,0.066678339,pos,ns,0.774634581,Zic5,Zic5_Intergenic_downstream,14,122452886,122452935,122452886,122452887,50,+,CGAAGCTGCCTTAATTAATACCATCTTAAATAGTCCAGCAGCCACCGAAG,Distal Intergenic,14,122459193,122460021,829,2,Zic5-202,7086,Zic5-201,Zic5,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,14,26,65100,ENSMUSG00000041703,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
5358,cg05420466,0.00000585,0.00000405,1.443284697,0.149950017,gain,ns,-0.00000445,0.00000689,-0.646286511,0.518571981,neg,ns,0.001503504,0.002017159,0.745357038,0.456620653,pos,ns,0.340444449,-0.0000489,0.0000694,-0.704237761,0.481813399,neg,ns,0.070670231,Lmx1b,Lmx1b_Intron,2,33616618,33616667,33616666,33616667,50,-,GCGCTATTGTGTGAGGAATATCAATGGAGTAATTACAGTTACATCGGGCG,"Intron (Lmx1b-201/Lmx1b, intron 2 of 7)",2,33560965,33640608,79644,2,Lmx1b-201,23941,Lmx1b-201;Lmx1b-203;Lmx1b-204;Lmx1b-202,Lmx1b;Lmx1b;Lmx1b;Lmx1b,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,26,16917,ENSMUSG00000038765,conserved gene and region,2,33616662,33616784,123,*,123,19,0.707317073,1.243085106,0.154471545,9.00E-19,CpGisland,TRUE,NA,NRS
21746,cg12619924,0.00000202,0.0000035,0.575646951,0.565271461,gain,ns,-0.00000385,0.00000595,-0.645998496,0.518758239,neg,ns,0.002705781,0.001744004,1.551476608,0.121807787,pos,ns,0.914324948,-0.000114344,0.00006,-1.906483936,0.057511907,neg,ns,0.93458979,Zfhx3,Zfhx3_Exon,8,108956369,108956418,108956417,108956418,50,+,TCATTGTTCCAAAGGTGCAGTACAAGTTGGTCTGCCGCAAGTGCCAGGCG,"Exon (Zfhx3-204/Zfhx3, exon 16 of 16)",8,107942644,108961630,1018987,1,Zfhx3-204,1013725,Zfhx3-204;Zfhx3-201,Zfhx3;Zfhx3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,46,177,11906,ENSMUSG00000038872,conserved gene and region,8,108956404,108956473,70,*,70,8,0.7,0.942760943,0.114285714,0.000000774,CpGisland,TRUE,U10,Tr-S
4447,cg04856731,0.000131854,0.0000165,7.981181408,2.84E-14,gain,yes,-0.0000181,0.0000281,-0.645898012,0.51882323,neg,ns,0.015675439,0.008222459,1.906417485,0.057520555,pos,ns,1.240176935,-0.000058,0.00028277,-0.205067257,0.837654161,neg,ns,0.538163153,Ntm,Ntm_Intron,9,28935288,28935337,28935288,28935289,50,+,CGTCTTCCAAACACATATGCCACCTTAATTGTGATTTGTGTGATAGTTCA,"Intron (Gm48091-201/Gm48091-201, intron 1 of 2)",9,28996231,29014259,18029,2,Ntm-211,78922,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,27,32,235106,ENSMUSG00000059974,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12185,cg06553243,-0.00000524,0.00000492,-1.066060654,0.287225791,loss,ns,-0.0000054,0.00000835,-0.645858948,0.518848497,neg,ns,-0.003662777,0.0024473,-1.496660015,0.135499154,neg,ns,0.868063416,0.0000699,0.0000842,0.829990631,0.407182783,pos,ns,0.884206026,Map2k5,Map2k5_Intron,9,63262633,63262682,63262633,63262634,50,-,CGCTTTGGTCTTCGTGTTTGGCTGGGAGTAAAGGTGGCTGCAATTCAAAT,"Intron (Map2k5-201/Map2k5, intron 14 of 21)",9,63163768,63377902,214135,2,Map2k5-201,115220,Map2k5-201;Map2k5-202,Map2k5;Map2k5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,34,37,23938,ENSMUSG00000058444,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9128,cg08645527,-0.000000483,0.00000071,-0.679766287,0.497159739,loss,ns,-0.000000779,0.00000121,-0.645834815,0.518864106,neg,ns,0.00048887,0.000353317,1.383658388,0.167458573,pos,ns,0.776092615,-0.0000321,0.0000122,-2.644052516,0.008608836,neg,ns,0.013363828,Taf5,Taf5_fiveUTR,19,47067751,47067800,47067799,47067800,50,-,GGCTCAGCCGCAAGATGGCGGCGCTGGCGGAGGAGCAGACGGAGGTGGCG,Promoter (<=1kb),19,47067746,47083479,15734,1,Taf5-201,5,Taf5-201,Taf5,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,10,226182,ENSMUSG00000025049,conserved gene but different region,19,47067495,47068485,991,*,991,110,0.696266398,0.916628127,0.110998991,8.88E-89,CpGisland,TRUE,U1,Pr-A
11103,cg22300498,0.0000639,0.0000101,6.356518369,7.37E-10,gain,yes,0.000011,0.0000171,0.645669252,0.518971202,pos,ns,0.01456498,0.005006539,2.90919158,0.00388564,pos,ns,2.410537397,-0.000275136,0.000172174,-1.598006647,0.111060244,neg,ns,0.118559478,Nkx2-9,Nkx2-9_Promoter,12,56614722,56614771,56614770,56614771,50,+,ACCTGTTGGAAGCATTTGTTCCAGTCAAGATTTTGCATTTGTTCAGTCCG,Promoter (1-2kb),12,56611389,56613284,1896,2,Nkx2-9-201,-1438,Nkx2-9-201,Nkx2-9,-1438,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,3,18094,ENSMUSG00000058669,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
6687,cg09009312,-0.00000417,0.00000623,-0.669120226,0.503916788,loss,ns,-0.00000683,0.0000106,-0.645562804,0.519040065,neg,ns,-0.008725405,0.003099298,-2.815284692,0.005185405,neg,ns,2.285217301,0.000330942,0.000106585,3.10496745,0.002078727,pos,ns,0.863521276,Dennd1a,Dennd1a_Intron,2,38023458,38023507,38023506,38023507,50,+,CCATTAGCACTTTTGACAGATCCAAAGATAACTCTGAAGCCACCAAAACG,"Intron (Dennd1a-201/Dennd1a, intron 8 of 21)",2,37798991,38287375,488385,2,Dennd1a-201,263868,Dennd1a-201;Dennd1a-207;Dennd1a-210;Dennd1a-204;Dennd1a-202,Dennd1a;Dennd1a;Dennd1a;Dennd1a;Dennd1a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,46,227801,ENSMUSG00000035392,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12536,cg15170039,0.0000118,0.00000306,3.870317297,0.000132547,gain,ns,-0.00000336,0.0000052,-0.645554509,0.519045432,neg,ns,0.005088003,0.001523401,3.339897343,0.000940444,pos,ns,3.026667281,-0.000139687,0.0000524,-2.666305817,0.008071286,neg,ns,0.933652286,Klhl28,Klhl28_Exon,12,64956860,64956909,64956908,64956909,50,+,CCAGATTTCCCTCCTACTGCACAAAGTACTTTGGGAGCACAGCGAGGTCG,"Exon (Klhl28-203/Klhl28, exon 2 of 5)",12,64938833,64965534,26702,2,Klhl28-203,8625,Klhl28-203;Klhl28-201;Klhl28-202,Klhl28;Klhl28;Klhl28,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,66689,ENSMUSG00000020948,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18455,cg10604788,0.00000556,0.0000721,0.077051376,0.93863238,gain,ns,0.000079,0.000122503,0.645088204,0.519347149,pos,ns,-0.011019229,0.035889256,-0.307034195,0.759023489,neg,ns,0.119744784,-0.000223122,0.001234229,-0.180778291,0.856659732,neg,ns,0.64752818,Cnot1,Cnot1_Exon,8,95775311,95775360,95775311,95775312,50,+,CGCCACTGAAATCCACATGCGAAAATAGGCAGCGTAATAAATGCCTGTCT,"Exon (Cnot1-202/Cnot1, exon 3 of 49)",8,95719451,95807462,88012,2,Cnot1-202,32102,Cnot1-202;Cnot1-201;Cnot1-203;Cnot1-216;Cnot1-217;Cnot1-207;Cnot1-209,Cnot1;Cnot1;Cnot1;Cnot1;Cnot1;Cnot1;Cnot1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,24,234594,ENSMUSG00000036550,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4328,cg18724232,-0.0000207,0.00000819,-2.532132941,0.011830598,loss,ns,-0.00000897,0.0000139,-0.645068014,0.519360215,neg,ns,-0.00079497,0.004074607,-0.19510334,0.845439857,neg,ns,0.072917282,0.000154183,0.000140125,1.100318268,0.272047158,pos,ns,0.804958949,Samd4b,Samd4b_threeUTR,7,28401833,28401882,28401833,28401834,50,-,CGTGTTCTGTCATGCTCAGACACAGAGACTCCAGAGTGGGATTGATCTCC,3' UTR,7,28399522,28436191,36670,2,Samd4b-204,34309,Paf1-201;Paf1-202;Paf1-207;Paf1-205;Paf1-208;Samd4b-204;Samd4b-201;Samd4b-203;Samd4b-202,Paf1;Paf1;Paf1;Paf1;Paf1;Samd4b;Samd4b;Samd4b;Samd4b,8882;8792;6008;5182;3399;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,9,11,233033,ENSMUSG00000109336,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15695,cg15890010,-0.0000226,0.00000722,-3.124834103,0.00194736,loss,ns,0.00000791,0.0000123,0.644931059,0.519448848,pos,ns,-0.001360146,0.003594436,-0.378403038,0.705390212,neg,ns,0.151570571,-0.0000646,0.000123612,-0.522652208,0.601589619,neg,ns,0.745883919,Rbm46,Rbm46_Exon,3,82865396,82865445,82865444,82865445,50,-,AATCTACAATTATCCAGGCTTACACACACACCAATAAACTTCCCTGGTCG,"Exon (Rbm46-201/Rbm46, exon 3 of 5)",3,82837228,82876483,39256,2,Rbm46-201,11038,Rbm46-201;Rbm46-202;Rbm46-203,Rbm46;Rbm46;Rbm46,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,633285,ENSMUSG00000033882,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
441,cg09030280,-0.00000216,0.00000177,-1.224060801,0.221858764,loss,ns,-0.00000193,0.000003,-0.644896437,0.519471256,neg,ns,-0.002435816,0.000878675,-2.772147793,0.005905586,neg,ns,2.228737022,0.0000434,0.0000302,1.435634777,0.152114527,pos,ns,0.956345596,Snx9,Snx9_Exon,17,5920613,5920662,5920661,5920662,50,+,GATGACGGCGTGAAGGAGCTGCTGACGGTGGGGCAGGAGCACTGGAAGCG,"Exon (Snx9-201/Snx9, exon 12 of 18)",17,5841329,5931954,90626,1,Snx9-201,79284,Snx9-201,Snx9,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,66616,ENSMUSG00000002365,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16973,cg24439128,-0.000000259,0.00000373,-0.069513677,0.944625565,loss,ns,-0.00000409,0.00000634,-0.644721312,0.519584607,neg,ns,0.000377993,0.001857029,0.203547023,0.838841043,pos,ns,0.076320328,-0.0000643,0.0000639,-1.006468566,0.314975172,neg,ns,0.896328921,Zfp423,Zfp423_Intron,8,87742131,87742180,87742179,87742180,50,+,CATTCCCTCTTGCATGCCAGCACACCAATAAATTAAGATATTCCTGGCCG,"Intron (Zfp423-203/Zfp423, intron 3 of 5)",8,87661810,87804439,142630,2,Zfp423-203,62259,Zfp423-203;Zfp423-202;Zfp423-201,Zfp423;Zfp423;Zfp423,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,42,53,94187,ENSMUSG00000045333,conserved gene and region,8,87742179,87742302,124,*,124,11,0.64516129,0.853033146,0.088709677,3.88E-08,CpGisland,TRUE,U15,NS
220,cg04200591,0.00000595,0.00000442,1.347293839,0.178869552,gain,ns,0.00000484,0.00000751,0.644418673,0.51978052,pos,ns,0.0007994,0.002199353,0.363470269,0.716501357,pos,ns,0.144782983,-0.0000201,0.0000756,-0.265112554,0.791098954,neg,ns,0.88395091,Gm21992,Gm21992_Exon,19,4788009,4788058,4788057,4788058,50,+,CGGCTGGTGGACAACTGCACGTGCATTCGTTTGCCTTGAAGAAACAGACG,"Exon (Rbm4-206/Rbm4, exon 3 of 4)",19,4742913,4811612,68700,2,Gm21992-203,23554,Gm21992-203;Gm21992-206;Gm21992-204;Gm21992-201;Gm21992-205;Gm21992-202;Rbm4-206;Rbm4-203;Rbm4-207;Rbm4-201;Rbm4-204;Rbm4-202;Rbm4-205,Gm21992;Gm21992;Gm21992;Gm21992;Gm21992;Gm21992;Rbm4;Rbm4;Rbm4;Rbm4;Rbm4;Rbm4;Rbm4,0;0;0;0;0;0;0;0;0;0;0;0;5825,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,27,48,102902673,ENSMUSG00000096370,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21990,cg15684287,0.0000349,0.000004,8.711591119,1.83E-16,gain,yes,-0.00000438,0.0000068,-0.644413749,0.519783708,neg,ns,0.008025115,0.001992728,4.027199632,0.000071,pos,ns,4.148500261,-0.0000754,0.0000685,-1.09995453,0.272205367,neg,ns,0.072121445,Dmrta2,Dmrta2_Intergenic_downstream,4,109984342,109984391,109984342,109984343,50,-,CGAGTTCCGCCAGGCAGTGAAACTTAATAGCAGGACAAGAAAACGGTTTA,Downstream (<1kb),4,109978053,109983687,5635,1,Dmrta2-201,6338,Dmrta2-201,Dmrta2,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,4,13,242620,ENSMUSG00000047143,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
1094,cg26754675,0.000122903,0.0000146,8.434546227,1.28E-15,gain,yes,-0.000016,0.0000248,-0.64437657,0.519807779,neg,ns,0.01609102,0.007252298,2.218747675,0.0272279,pos,ns,1.564985849,-0.000544255,0.000249406,-2.182204164,0.02984491,neg,ns,0.087510256,Ptprg,Ptprg_fiveUTR,14,11553593,11553642,11553641,11553642,50,-,GCCTGCGCCGGAGCCACAACTTTCAGGAGCATGGACTGAAGGCGCCCTCG,Promoter (<=1kb),14,11553532,12242041,688510,1,Ptprg-201,61,Ptprg-201;Ptprg-204;Ptprg-205,Ptprg;Ptprg;Ptprg,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,8,23,19270,ENSMUSG00000021745,conserved gene and region,14,11553572,11554181,610,*,610,61,0.691803279,0.845835607,0.1,1.72E-46,CpGisland,TRUE,NA,NRS
21257,cg16718156,-0.00000326,0.00000213,-1.527308439,0.127703971,loss,ns,-0.00000233,0.00000362,-0.644356412,0.51982083,neg,ns,-0.001331779,0.001060781,-1.255470223,0.210253612,neg,ns,0.677256535,-0.0000363,0.0000365,-0.995734526,0.320155739,neg,ns,0.041706323,Gm11708,Gm11708_Promoter,11,107012873,107012922,107012921,107012922,50,+,TGGCCTAATGGATAAGGCATCAGCCTCCGGAGCTGGGGATTGTGGGTTCG,Promoter (8-9kb),11,107003909,107004740,832,2,Gm11708-201,-8133,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,2,100417144,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
18062,cg21323330,0.00000261,0.00000654,0.398905569,0.690237426,gain,ns,0.00000716,0.0000111,0.644279615,0.519870553,pos,ns,-0.006636442,0.003254162,-2.039370628,0.042260774,neg,ns,1.374062554,0.00000684,0.00011191,0.061104642,0.951315248,pos,ns,0.753288565,Pola1,Pola1_Intron,X,93429813,93429862,93429861,93429862,50,+,AGGATGGTAACAGTCCTTAACAGTATATTCAACAAACAGCCCTGACTTCG,"Intron (Pola1-201/Pola1, intron 34 of 36)",20,93304767,93632155,327389,2,Pola1-201,202293,Pola1-201,Pola1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,59,62,18968,ENSMUSG00000006678,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22561,cg05320568,-0.0000142,0.00000406,-3.505452774,0.000523077,loss,ns,0.00000444,0.00000689,0.644208198,0.519916795,pos,ns,-0.001391179,0.002018351,-0.689265319,0.491171898,neg,ns,0.308766489,-0.00000619,0.0000694,-0.089224998,0.928960715,neg,ns,0.941502745,Rpl19-ps10,Rpl19-ps10_Intergenic_upstream,7,115132268,115132317,115132268,115132269,50,+,CGAAAGAGGCCAGCAAACAGCATATGTTGCTTAGATGGAAATCATAATTG,Distal Intergenic,7,115172056,115172385,330,1,Rpl19-ps10-201,-39739,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,29,668472,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27817,cg25582093,0.0000498,0.00000578,8.612159581,3.69E-16,gain,yes,-0.00000633,0.00000982,-0.644120834,0.519973365,neg,ns,-0.010064271,0.00287683,-3.498389081,0.000536584,neg,ns,3.270361973,0.000433667,0.0000989,4.38339982,0.000016,pos,ns,0.814849323,Esrrg,Esrrg_Exon,1,188043351,188043400,188043399,188043400,50,-,CAAACAAAGATCGACACATTGATTCCAGCTGTTCGTCCTTCATCAAGACG,"Exon (Esrrg-204/Esrrg, exon 4 of 4)",1,187608791,188043502,434712,1,Esrrg-204,434560,Esrrg-204;Esrrg-203;Esrrg-201;Esrrg-202,Esrrg;Esrrg;Esrrg;Esrrg,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,60,26381,ENSMUSG00000026610,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9615,cg10959745,0.000000147,0.00000154,0.095776579,0.923759903,gain,ns,0.00000168,0.00000261,0.644103641,0.519984498,pos,ns,0.001442411,0.000764009,1.887951277,0.059966233,pos,ns,1.222093234,-0.0000952,0.0000263,-3.623440957,0.000339605,neg,ns,0.96054716,Ncam1,Ncam1_Intron,9,49531992,49532041,49532040,49532041,50,-,GACGACATCATCAGCACCATGCAAGCCACATGACAAAGTCACATGATACG,"Intron (Gm11149-204/Gm11149-204, intron 2 of 5)",9,49502136,49798925,296790,2,Ncam1-204,266884,Ncam1-204;Ncam1-205;Ncam1-202;Ncam1-201;Ncam1-206;Ncam1-203,Ncam1;Ncam1;Ncam1;Ncam1;Ncam1;Ncam1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,16,17967,ENSMUSG00000039542,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17578,cg18498870,0.000104932,0.0000152,6.901715305,2.91E-11,gain,yes,-0.0000166,0.0000258,-0.644001261,0.520050797,neg,ns,0.020496963,0.007567049,2.708712734,0.007129782,pos,ns,2.146923747,-0.000666636,0.00026023,-2.561717488,0.010888317,neg,ns,0.232875761,Spi1,Spi1_Exon,2,91115130,91115179,91115130,91115131,50,-,CGACATGAAGGACAGCATCTGGTGGGTGGACAAGGACAAGGGCACCTTCC,"Exon (Spi1-201/Spi1, exon 5 of 5)",2,91096096,91115756,19661,1,Spi1-201,19034,Mybpc3-201;Mybpc3-202;Mybpc3-203;Spi1-204;Spi1-201;Spi1-203,Mybpc3;Mybpc3;Mybpc3;Spi1;Spi1;Spi1,-2965;-2965;-2965;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,7,20375,ENSMUSG00000002111,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16659,cg08339003,0.0000246,0.00000746,3.301990217,0.001072189,gain,ns,-0.00000816,0.0000127,-0.643997025,0.52005354,neg,ns,-0.006866849,0.003713494,-1.849160936,0.065386445,neg,ns,1.184512271,0.000267733,0.000127707,2.096469188,0.036850846,pos,ns,0.856548964,Tbx4,Tbx4_Intergenic_upstream,11,85876130,85876179,85876130,85876131,50,+,CGGTCTGCCTGTTTATTGCCCGTATGGAGATCATTAATGCCTCCTGACAC,Distal Intergenic,11,85886422,85916095,29674,1,Tbx4-203,-10243,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,9,21387,ENSMUSG00000000094,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25139,cg25278124,-7.17E-08,0.00000513,-0.013986587,0.988849679,loss,ns,0.00000561,0.00000871,0.643946384,0.520086335,pos,ns,-0.001324599,0.002551633,-0.519118247,0.604048687,neg,ns,0.218928056,-0.0000701,0.0000878,-0.798558977,0.425157533,neg,ns,0.847029491,Ahdc1,Ahdc1_Exon,4,133061453,133061502,133061453,133061454,50,+,CGTGTGAAGCCCCAGGGCCTGGTGGTGACTTCCAGTGCCGTGTGCAGCTC,"Exon (Ahdc1-203/Ahdc1, exon 6 of 7)",4,133011506,133077863,66358,1,Ahdc1-203,49947,Ahdc1-210;Ahdc1-203;Ahdc1-204;Ahdc1-205;Ahdc1-211;Ahdc1-209;Ahdc1-206;Ahdc1-201;Ahdc1-202;Ahdc1-208,Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1,0;0;0;0;0;0;0;0;0;-4747,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,49,230793,ENSMUSG00000037692,conserved gene and region,4,133061386,133061574,189,*,189,13,0.698412698,0.586816336,0.068783069,0.000000034,CpGisland,TRUE,U10,Tr-S
20157,cg19574793,0.0000457,0.000009,5.081349963,0.000000649,gain,yes,0.00000985,0.0000153,0.64392083,0.520102884,pos,ns,0.019797798,0.004480643,4.418517058,0.0000138,pos,ns,4.861540588,-0.000478583,0.000154089,-3.105887243,0.002072469,neg,ns,0.147834429,Calcoco1,Calcoco1_Intergenic_upstream,15,102753199,102753248,102753199,102753200,50,+,CGGTTGGCCTGGATTATTAATTAGGGCTTGAAGTCATTTAACGATGATTT,Distal Intergenic,15,102706777,102722178,15402,2,Calcoco1-201,-31021,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,20,29,67488,ENSMUSG00000023055,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
20575,cg15548893,0.000000311,0.000000679,0.457632396,0.647537139,gain,ns,-0.000000743,0.00000115,-0.643888253,0.520123982,neg,ns,-0.00070282,0.000338084,-2.078833851,0.038454687,neg,ns,1.415050722,0.000017,0.0000116,1.462298076,0.144672562,pos,ns,0.988470711,Hipk1,Hipk1_threeUTR,3,103753366,103753415,103753414,103753415,50,-,GTGAGGGGAATTACCAGTACAGCGGCAGTCTGTTCAACCAGCGCCGGCCG,3' UTR,3,103739815,103791563,51749,2,Hipk1-203,38148,Hipk1-203;Hipk1-202;Hipk1-201;Hipk1-206;Hipk1-207;Hipk1-204;Hipk1-205,Hipk1;Hipk1;Hipk1;Hipk1;Hipk1;Hipk1;Hipk1,0;0;0;0;-2301;-2352;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,11,15257,ENSMUSG00000008730,conserved gene but different region,3,103753407,103753459,53,*,53,7,0.735849057,0.97631579,0.132075472,0.00000196,CpGisland,TRUE,U10,Tr-S
13409,cg14175748,-0.0000743,0.00000984,-7.547690357,4.98E-13,loss,yes,-0.0000108,0.0000167,-0.643789753,0.520187776,neg,ns,-0.010789732,0.00489739,-2.203159773,0.028318825,neg,ns,1.547924777,0.000189512,0.000168421,1.125227524,0.261363063,pos,ns,0.903048918,Nr2f2,Nr2f2_Exon,7,70368500,70368549,70368500,70368501,50,-,CGCCCTTCAATGGGCACAGAGGTGCTCTTTCAACCAAAAACTTGTGCTAC,Promoter (1-2kb),7,70354439,70366735,12297,2,Nr2f2-202,-1814,Nr2f2-202,Nr2f2,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,24,69,11819,ENSMUSG00000030551,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26416,cg07684169,0.000012,0.00000234,5.124396131,0.000000526,gain,yes,-0.00000256,0.00000397,-0.643713818,0.520236959,neg,ns,0.002308066,0.001163031,1.98452661,0.048078544,pos,ns,1.318048697,-0.0000595,0.00004,-1.487277368,0.137957977,neg,ns,0.029872987,Pax1,Pax1_fiveUTR,2,147365025,147365074,147365073,147365074,50,+,TCAGACGAATTTCTCCCAATCGGATGAAGTTCACCCTGGGCCTGGGGTCG,5' UTR,2,147361925,147366362,4438,1,Pax1-202,3100,Pax1-202;Pax1-201;Pax1-203,Pax1;Pax1;Pax1,0;0;-3208,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,2,18503,ENSMUSG00000037034,conserved gene but different region,2,147364898,147365344,447,*,447,56,0.724832215,0.95746634,0.125279642,8.19E-49,CpGisland,TRUE,U13,Hc-P
17804,cg27699373,0.0000395,0.00000404,9.798697823,6.34E-20,gain,yes,-0.00000441,0.00000686,-0.643666105,0.520267864,neg,ns,0.005402821,0.002008411,2.690096701,0.007530164,pos,ns,2.123195556,-0.0000324,0.0000691,-0.469252551,0.639218986,neg,ns,0.04848751,Twist2,Twist2_Exon,1,91801943,91801992,91801943,91801944,50,+,CGCTCAAGCTGGCCGCCAGGTACATAGACTTCCTCTACCAGGTCCTGCAG,Promoter (<=1kb),1,91801461,91848028,46568,1,Twist2-201,482,Twist2-201;Twist2-202,Twist2;Twist2,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,13345,ENSMUSG00000007805,conserved gene and region,1,91801708,91802242,535,*,535,55,0.652336449,0.967672981,0.102803738,1.09E-42,CpGisland,TRUE,U3,Pr-B
26941,cg23955246,0.00000513,0.00000668,0.767010672,0.44365891,gain,ns,-0.00000731,0.0000114,-0.643640285,0.520284588,neg,ns,-0.000459666,0.003326397,-0.138187324,0.89018209,neg,ns,0.050521148,0.0000757,0.000114395,0.661861005,0.508551986,pos,ns,0.89191494,Ski,Ski_Intron,4,155213444,155213493,155213492,155213493,50,-,AGGCAAGGCACTTCACACATGAACTTAAACTGCTAATTAAAATCCCCTCG,"Intron (Ski-202/Ski, intron 2 of 7)",4,155154075,155222535,68461,2,Ski-202,9042,Ski-202;Ski-201,Ski;Ski,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,8,20481,ENSMUSG00000029050,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
2769,cg26768458,0.0000338,0.00000532,6.342990441,7.97E-10,gain,yes,0.00000582,0.00000904,0.64363665,0.520286943,pos,ns,0.002855186,0.002649284,1.077719552,0.28199684,pos,ns,0.549755759,0.0000264,0.0000911,0.289815639,0.772151032,pos,ns,0.071286802,Prdm13,Prdm13_Promoter,4,21688000,21688049,21688000,21688001,50,-,CGACTGTGAGGAAAGTTATTTATTAATATAGCCAATTGTGGCTGGTTCCC,Promoter (2-3kb),4,21677480,21685963,8484,2,Prdm13-205,-2086,Prdm13-205;Prdm13-201;Prdm13-202;Prdm13-203;Prdm13-206;Prdm13-204,Prdm13;Prdm13;Prdm13;Prdm13;Prdm13;Prdm13,0;0;0;0;0;-2155,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,19,23,230025,ENSMUSG00000040478,conserved gene and region,4,21687850,21688001,152,*,152,12,0.546052632,1.062937063,0.078947368,2.89E-08,CpGisland,TRUE,NA,NRS
24817,cg14296129,-0.0000605,0.0000174,-3.485563401,0.000561948,loss,ns,-0.000019,0.0000295,-0.643431502,0.520419835,neg,ns,-0.010737883,0.008638691,-1.242998838,0.214807566,neg,ns,0.667950425,-0.000605677,0.000297084,-2.038741422,0.042323964,neg,ns,0.111935694,Rab5b,Rab5b_fiveUTR,10,128696204,128696253,128696204,128696205,50,-,CGTCGGCCCCAAGCCTGTGTCGAACAGACAAACAGCTGCAGCTCAACCAA,Promoter (<=1kb),10,128677175,128696264,19090,2,Rab5b-201,11,Cdk2-201;Cdk2-202;Cdk2-204;Cdk2-206;Cdk2-205;Rab5b-201;Rab5b-202,Cdk2;Cdk2;Cdk2;Cdk2;Cdk2;Rab5b;Rab5b,0;0;0;0;8746;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,1,19344,ENSMUSG00000000711,conserved gene and region,10,128695869,128696208,340,*,340,29,0.732352941,0.685769926,0.085294118,2.64E-20,CpGisland,TRUE,U1,Pr-A
13480,cg09058615,-0.00000852,0.00000636,-1.339353336,0.181436803,loss,ns,0.00000695,0.0000108,0.643237053,0.520545812,pos,ns,0.005510824,0.003164749,1.741314749,0.08262044,pos,ns,1.082912495,-0.000289154,0.000108835,-2.656798015,0.008297149,neg,ns,0.581200202,Vwc2l,Vwc2l_fiveUTR,1,70726035,70726084,70726035,70726036,50,-,CGTAGCAAACACTGTGTAAGTGAACTCATGTGTGGAGGAGGCGTAATCAG,Promoter (<=1kb),1,70725715,70885397,159683,1,Vwc2l-201,320,Spag16-201;Spag16-204;Vwc2l-201;Vwc2l-202;Vwc2l-203;Vwc2l-204,Spag16;Spag16;Vwc2l;Vwc2l;Vwc2l;Vwc2l,899047;774414;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,6,320460,ENSMUSG00000045648,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14820,cg14756077,-0.00000201,0.00000207,-0.969529286,0.333036998,loss,ns,-0.00000226,0.00000352,-0.64276267,0.520853217,neg,ns,0.001649866,0.001032363,1.598145466,0.111029344,pos,ns,0.954562227,-0.0000996,0.0000355,-2.804332616,0.005360279,neg,ns,0.964359378,Pipox,Pipox_Intergenic_downstream,11,77880294,77880343,77880342,77880343,50,-,TAATAAAATGGCACATTTAACATTCAAACATTGAACAGGGTTTCTAAGCG,Distal Intergenic,11,77881060,77882686,1627,2,Pipox-202,2392,Pipox-201;Pipox-202;Pipox-203,Pipox;Pipox;Pipox,0;2343;4201,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,6,19193,ENSMUSG00000017453,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13134,cg21374469,0.0000314,0.0000154,2.043978099,0.041800495,gain,ns,-0.0000168,0.0000261,-0.642739727,0.520868086,neg,ns,0.012632738,0.007653863,1.650504946,0.099852431,pos,ns,1.000641357,-0.000171643,0.000263216,-0.652098637,0.514820743,neg,ns,0.61404343,Dnah2,Dnah2_Promoter,11,69553130,69553179,69553130,69553131,50,-,CGGTTGCCAAGTCCCTGAGGCTGATAGCCAGCGATGGGGCTGTCGGCTCC,Promoter (4-5kb),11,69510666,69549110,38445,2,Dnah2-203,-4069,Dnah2-202;Dnah2-203;Efnb3-201,Dnah2;Dnah2;Efnb3,0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,7,10,327954,ENSMUSG00000005237,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5652,cg19524796,-0.0000581,0.0000104,-5.574725054,0.000000054,loss,yes,-0.0000114,0.0000177,-0.642718088,0.520882111,neg,ns,-0.006714597,0.005184553,-1.295115944,0.196243914,neg,ns,0.707203802,-0.000171812,0.000178296,-0.963630811,0.335982134,neg,ns,0.825000154,Sox2,Sox2_Intron,3,34503980,34504029,34503980,34503981,50,-,CGTCCAGTGACTGTTAATCAAACCAAGTTTACAGTCCCGTACAGCACCTG,"Intron (Sox2ot-204/Sox2ot-204, intron 2 of 3)",3,34650405,34652461,2057,1,Sox2-201,-146425,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,34,62,20674,ENSMUSG00000074637,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
346,cg23076498,0.0000337,0.00000465,7.257264001,3.19E-12,gain,yes,-0.00000507,0.00000789,-0.642596736,0.520960766,neg,ns,0.006037436,0.002312931,2.610296511,0.009485751,pos,ns,2.022928271,-0.000189558,0.0000795,-2.383133084,0.0177681,neg,ns,0.06931614,Zfhx4,Zfhx4_fiveUTR,3,5218519,5218568,5218567,5218568,50,+,CTCTCTCATTCCCAGAGTGCATATCGGGAATAGACACACAAAGACATGCG,Promoter (<=1kb),3,5218526,5413165,194640,1,Zfhx4-203,0,Zfhx4-203;Zfhx4-202;Zfhx4-201;Zfhx4-204,Zfhx4;Zfhx4;Zfhx4;Zfhx4,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,10,77,80892,ENSMUSG00000025255,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
24558,cg10626354,-0.00000485,0.00000278,-1.742758546,0.082367388,loss,ns,0.00000303,0.00000472,0.642370623,0.521107338,pos,ns,-0.00216968,0.00138393,-1.567767074,0.117955655,neg,ns,0.928281233,-0.0000182,0.0000476,-0.381788133,0.70288009,neg,ns,0.954782095,Avil,Avil_Exon,10,127011015,127011064,127011015,127011016,50,-,CGCCACTTCATGGCCATCTTCAAAGGGAAGCTAGTTATCTTTGAGGTGAG,"Exon (Avil-201/Avil, exon 13 of 20)",10,127000709,127020994,20286,1,Avil-201,10306,Avil-201;Avil-204;Avil-202;Avil-203;Tsfm-207,Avil;Avil;Avil;Avil;Tsfm,0;10276;8014;0;19739,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,11567,ENSMUSG00000025432,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21105,cg10347306,0.0000192,0.00000358,5.368768249,0.000000156,gain,yes,0.00000391,0.00000608,0.642364621,0.521111228,pos,ns,0.009335926,0.001781706,5.239881692,0.000000298,pos,ns,6.526477439,-0.000238462,0.0000613,-3.891818506,0.000121831,neg,ns,0.077794137,Barhl2,Barhl2_Exon,5,106466302,106466351,106466350,106466351,50,+,GCCGGAGAGGTCTATACAATCACTTAATTACCAAAACTGTCAGTCAGGCG,Promoter (8-9kb),5,106452523,106458166,5644,2,Barhl2-201,-8136,NA,NA,NA,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,27,104382,ENSMUSG00000034384,conserved gene but different region,5,106466350,106466446,97,*,97,9,0.597938144,1.039285714,0.092783505,0.000000708,CpGisland,TRUE,U13,Hc-P
2672,cg25872051,-0.0000106,0.00000224,-4.722354394,0.00000354,loss,ns,0.00000244,0.0000038,0.64215213,0.52124899,pos,ns,0.00441352,0.001114443,3.960292083,0.0000929,pos,ns,4.031919791,-0.000095,0.0000383,-2.478162018,0.013738313,neg,ns,0.953822019,Adk,Adk_Intron,14,21252817,21252866,21252865,21252866,50,-,ACAATTTTCTTCAGCCCTGTTGAATAAAACATCCAGTCTGATTACCTCCG,"Intron (Adk-201/Adk, intron 6 of 10)",14,21052574,21448569,395996,1,Adk-201,200243,Adk-201;Adk-210;Adk-206;Adk-207,Adk;Adk;Adk;Adk,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,10,11534,ENSMUSG00000039197,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10965,cg04023684,-0.0000076,0.00000229,-3.320874801,0.001004548,loss,ns,0.0000025,0.00000389,0.642121694,0.521268724,pos,ns,-0.00031085,0.001138647,-0.272999567,0.785035321,neg,ns,0.105110802,0.0000239,0.0000392,0.609240274,0.542811418,pos,ns,0.962058336,Tcf7l2,Tcf7l2_Exon,19,55926023,55926072,55926071,55926072,50,+,ACAGAATAACTGGTGCGGCCCTTGCAGGTGTGTATAGTTTTCCAGATTCG,"Exon (Tcf7l2-213/Tcf7l2, exon 12 of 14)",19,55741820,55933229,191410,1,Tcf7l2-213,184203,Tcf7l2-213;Tcf7l2-201;Tcf7l2-208;Tcf7l2-211;Tcf7l2-212;Tcf7l2-222;Tcf7l2-215;Tcf7l2-207;Tcf7l2-202;Tcf7l2-209;Tcf7l2-210;Tcf7l2-203,Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,88,21416,ENSMUSG00000024985,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8371,cg21540320,-0.0000248,0.00000814,-3.043173815,0.002541323,loss,ns,0.00000888,0.0000138,0.642029677,0.521328387,pos,ns,0.003331523,0.004051718,0.822249397,0.411566955,pos,ns,0.385559502,-0.000179238,0.000139338,-1.286352079,0.199280078,neg,ns,0.879027765,Zeb2,Zeb2_Intron,2,45058392,45058441,45058392,45058393,50,-,CGGCTTTCTGAGGTGAGAGAAACTGACAGCACTAACTCTCCAGGGCAGAA,"Intron (Zeb2-212/Zeb2, intron 3 of 10)",2,44983632,45117395,133764,2,Zeb2-212,58954,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-218;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4969,cg15511420,0.0000355,0.0000108,3.291703528,0.001110792,gain,ns,-0.0000117,0.0000183,-0.641920884,0.521398933,neg,ns,0.006415914,0.005360367,1.196916922,0.232253452,pos,ns,0.634037823,0.0000838,0.000184343,0.454763339,0.6495978,pos,ns,0.352804666,Podxl,Podxl_Intron,6,31617565,31617614,31617565,31617566,50,-,CGGAAACTTGGGTGCGGAAGTGTGACTACATCCACCCAACTTCAGAGTTG,"Intron (Gm43154-210/Gm43154-210, intron 2 of 2)",6,31519488,31563981,44494,2,Podxl-201,-53633,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,3,27205,ENSMUSG00000025608,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14193,cg00893471,0.000033,0.00000467,7.053667852,1.14E-11,gain,yes,-0.0000051,0.00000794,-0.641826012,0.521460455,neg,ns,0.001868414,0.002325829,0.80333253,0.422398077,pos,ns,0.374278068,0.0000381,0.00008,0.476643352,0.633951904,pos,ns,0.106754429,Gm28230,Gm28230_Intron,2,74740724,74740773,74740772,74740773,50,-,AAAGTGCCGGGCCTTGGGAAGTGTTTTTCTTTTCATTCCTTACCGAAGCG,"Intron (Hoxd3-203/Hoxd3, intron 1 of 2)",2,74726728,74747918,21191,1,Gm28230-201,13996,Gm28230-201;Hoxd3-203;Hoxd3-205;Hoxd3-202;Hoxd3-201;Hoxd3-204;Hoxd3-206,Gm28230;Hoxd3;Hoxd3;Hoxd3;Hoxd3;Hoxd3;Hoxd3,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,23,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
26148,cg25007534,-0.00000174,0.00000128,-1.359501631,0.174975741,loss,ns,0.0000014,0.00000218,0.641806139,0.521473343,pos,ns,0.001191548,0.000637531,1.869004369,0.062565027,pos,ns,1.203668362,-0.0000377,0.0000219,-1.71755845,0.086875838,neg,ns,0.964579125,Lmo4,Lmo4_Intron,3,144196096,144196145,144196096,144196097,50,+,CGAGAAACAAATTTTGCAGCAGCATCGATTTGAAGAGTTCAATCAAAACT,"Intron (Lmo4-203/Lmo4, intron 2 of 4)",3,144188530,144202396,13867,2,Lmo4-203,6251,Lmo4-203;Lmo4-201;Lmo4-202;Lmo4-207;Lmo4-206;Lmo4-208;Lmo4-205,Lmo4;Lmo4;Lmo4;Lmo4;Lmo4;Lmo4;Lmo4,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,54,16911,ENSMUSG00000028266,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5711,cg04541569,-0.0000186,0.00000594,-3.135170754,0.00188208,loss,ns,-0.00000647,0.0000101,-0.641791675,0.521482723,neg,ns,-0.006211555,0.002954744,-2.102231367,0.03633937,neg,ns,1.439622603,0.000142632,0.000101613,1.403672635,0.161417284,pos,ns,0.918144172,Kctd15,Kctd15_Intergenic_downstream,7,34605207,34605256,34605255,34605256,50,-,CATAAAAATTTGCTTCCAGACAACATGGTCTGTTTATTGTGTAATAATCG,Distal Intergenic,7,34640182,34648744,8563,2,Kctd15-206,43537,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,25,233107,ENSMUSG00000030499,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21112,cg18459384,0.0000941,0.00000862,10.91832238,1.07E-23,gain,yes,0.00000939,0.0000146,0.641712892,0.521533816,pos,ns,0.008285403,0.00428782,1.932311369,0.054231977,pos,ns,1.265744565,0.000267995,0.000147458,1.817434586,0.070115902,pos,ns,0.273967181,Barhl2,Barhl2_Intron,5,106470135,106470184,106470183,106470184,50,-,GTCAAAACTTCAAGCTCTCTCATTATGAGGTATACCTGACGGGGACACCG,"Intron (Gm26872-201/Gm26872-201, intron 1 of 1)",5,106452523,106458166,5644,2,Barhl2-201,-12018,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,27,104382,ENSMUSG00000034384,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
19014,cg02899718,0.0000271,0.00000518,5.231778638,0.00000031,gain,yes,-0.00000564,0.0000088,-0.641572698,0.521624742,neg,ns,0.007055214,0.002577715,2.737002942,0.006558023,pos,ns,2.183227095,-0.00013026,0.0000886,-1.469413878,0.142734655,neg,ns,0.058505306,Dach1,Dach1_Promoter,14,98169899,98169948,98169947,98169948,50,-,ATTAACCCAAATTATCCAACCAGGAACTCGGAGCAGAGACTCCGAGAGCG,Promoter (<=1kb),14,97825866,98169765,343900,2,Dach1-203,-183,Dach1-201;Dach1-202;Dach1-203,Dach1;Dach1;Dach1,0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,8,76,13134,ENSMUSG00000055639,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
3496,cg03165986,0.0000013,0.00000545,0.238581302,0.8115879,gain,ns,0.00000593,0.00000925,0.641564224,0.521630239,pos,ns,0.00474663,0.002710051,1.751491058,0.080850281,pos,ns,1.092318464,-0.000210682,0.0000932,-2.26057742,0.024478723,neg,ns,0.891805601,Bcl11a,Bcl11a_threeUTR,11,24168088,24168137,24168136,24168137,50,-,AATATTTTGTTATTGGCCTTTTCTATTCCTGTAATGAAAGCTGTTTGTCG,3' UTR,11,24078056,24173194,95139,1,Bcl11a-201,90032,Bcl11a-201;Bcl11a-203;Bcl11a-202;Bcl11a-204;Bcl11a-206,Bcl11a;Bcl11a;Bcl11a;Bcl11a;Bcl11a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,98,14025,ENSMUSG00000000861,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3250,cg01593408,0.0000782,0.0000166,4.701169171,0.0000039,gain,ns,-0.0000181,0.0000283,-0.641489479,0.52167872,neg,ns,0.02481505,0.008283803,2.99561093,0.002959884,pos,ns,2.528725255,-0.000733524,0.000284879,-2.574860016,0.010491662,neg,ns,0.315669026,Kcnma1,Kcnma1_Intron,14,23360656,23360705,23360656,23360657,50,-,CGTGCTAAATAATACACCAGCTCTCCAGCCAAAGGGAAGTGACAGGCACT,"Intron (Kcnma1-207/Kcnma1, intron 22 of 27)",14,23289431,23803304,513874,2,Kcnma1-207,442599,Kcnma1-207;Kcnma1-210;Kcnma1-205;Kcnma1-201;Kcnma1-208;Kcnma1-209;Kcnma1-212;Kcnma1-204;Kcnma1-202;Kcnma1-211;Kcnma1-229;Kcnma1-234;Kcnma1-223;Kcnma1-214;Kcnma1-216;Kcnma1-219;Kcnma1-220;Kcnma1-224;Kcnma1-233;Kcnma1-236;Kcnma1-237;Kcnma1-213;Kcnma1-228;Kcnma1-203;Kcnma1-206;Kcnma1-221;Kcnma1-225;Kcnma1-226;Kcnma1-230;Kcnma1-235,Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,41,16531,ENSMUSG00000063142,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19276,cg03053374,0.0000521,0.00000875,5.956985313,6.97E-09,gain,yes,0.00000954,0.0000149,0.641466475,0.521693641,pos,ns,0.011021709,0.004355451,2.530555018,0.011882838,pos,ns,1.925079812,0.0000148,0.000149784,0.099025346,0.921182149,pos,ns,0.281443408,Rara,Rara_fiveUTR,11,98927794,98927843,98927794,98927795,50,-,CGTGCCTCTTGCAGCAGCCTAACCCAGAAGCAGGGGGGAATCCTGAATCG,Promoter (<=1kb),11,98927818,98974162,46345,1,Rara-203,0,Cdc6-201;Cdc6-203;Rara-203,Cdc6;Cdc6;Rara,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,12,19401,ENSMUSG00000037992,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
2430,cg07280826,0.00000262,0.00000104,2.53267683,0.011812639,gain,ns,-0.00000113,0.00000176,-0.641420422,0.521723514,neg,ns,-0.000214128,0.000515765,-0.415165222,0.678308147,neg,ns,0.168572967,0.00000976,0.0000177,0.550121044,0.5826325,pos,ns,0.015184556,Ptf1a,Ptf1a_Intron,2,19430720,19430769,19430720,19430721,50,-,CGCGAGCGACCATATAATTTGATTTGCCAGGCAATCTGCAGAGCGATCGC,"Intron (Gm13344-201/Gm13344-201, intron 1 of 1)",2,19445663,19447501,1839,1,Ptf1a-201,-14943,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,21,19213,ENSMUSG00000026735,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
22985,cg15986005,-0.00000164,0.0000153,-0.107190138,0.914707476,loss,ns,0.0000167,0.000026,0.641268079,0.521822339,pos,ns,0.002917799,0.007616204,0.383104095,0.701905152,pos,ns,0.15372157,-0.000295422,0.000261921,-1.12790688,0.260231438,neg,ns,0.621776042,Gm47912,Gm47912_Intron,13,116575639,116575688,116575639,116575640,50,+,CGGCCTTGGTATTGATTCAGAGTGTGTCAAAAGGGTCTTTTGTCGTGCCC,"Intron (Gm47914-201/Gm47914-201, intron 1 of 1)",13,116361198,116361694,497,2,Gm47912-201,-213945,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,8,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4378,cg02040823,0.00000305,0.0000106,0.288704085,0.773000791,gain,ns,0.0000115,0.000018,0.641233126,0.521845014,pos,ns,-0.000251439,0.005265812,-0.04774938,0.961946727,neg,ns,0.016848979,-0.000112912,0.000181091,-0.623510908,0.533407323,neg,ns,0.614356695,Opcml,Opcml_Intron,9,28644188,28644237,28644236,28644237,50,-,GTTAGATTAACGCTGATTGAATTCTTACACAGCCAGCTGATTGAAGCACG,"Intron (Opcml-202/Opcml, intron 2 of 7)",9,27790947,28925410,1134464,1,Opcml-202,853241,Opcml-202;Opcml-201;Opcml-204;Opcml-208,Opcml;Opcml;Opcml;Opcml,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,12,330908,ENSMUSG00000062257,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1728,cg26236677,0.0000207,0.000004,5.174885772,0.000000411,gain,yes,0.00000436,0.0000068,0.64116373,0.521890036,pos,ns,0.008964612,0.001992182,4.499895636,0.00000963,pos,ns,5.016441414,-0.000173155,0.0000685,-2.527410866,0.011987544,neg,ns,0.09420275,Gm5513,Gm5513_Intergenic_downstream,19,14890753,14890802,14890753,14890754,50,+,CGATGTGTAGACATAGTGAGGAGAGCCTGCTGGCTGACAGGGTGATTTAT,Distal Intergenic,19,14959549,14960766,1218,2,Gm5513-201,69964,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,22,433225,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
1594,cg11058785,-0.0000217,0.00000537,-4.047041449,0.0000656,loss,ns,-0.00000585,0.00000913,-0.641139901,0.521905495,neg,ns,0.000919332,0.002674115,0.343789205,0.73123788,pos,ns,0.135941319,-0.000129505,0.000092,-1.408235827,0.160063327,neg,ns,0.928063297,Zfp521,Zfp521_Intron,18,13810117,13810166,13810165,13810166,50,+,CATTTTTCCTCATTATGCTTCTCTTTTTATACCAGTGGTAATCACAGGCG,"Intron (Zfp521-201/Zfp521, intron 5 of 7)",18,13687013,13972787,285775,2,Zfp521-201,162621,Zfp521-201;Zfp521-205;Zfp521-204,Zfp521;Zfp521;Zfp521,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,81,225207,ENSMUSG00000024420,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20954,cg12689389,-0.0000004,0.00000179,-0.223920525,0.822966644,loss,ns,0.00000195,0.00000304,0.640972536,0.522014085,pos,ns,0.0000795,0.000889377,0.089345729,0.928864847,pos,ns,0.032047473,-0.0000048,0.0000306,-0.156925384,0.875405807,neg,ns,0.960044145,Tanc2,Tanc2_Exon,11,105835151,105835200,105835199,105835200,50,+,CTCCAGACTGGTGGCCCTCAGCTGCCATGGTACAAGGATGAGACAGATCG,"Exon (Tanc2-202/Tanc2, exon 9 of 26)",11,105589991,105929304,339314,1,Tanc2-202,245160,Tanc2-202,Tanc2,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,15,20,77097,ENSMUSG00000053580,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16536,cg21376542,-0.0000045,0.00000194,-2.317707544,0.021116078,loss,ns,-0.00000211,0.0000033,-0.64095677,0.522024315,neg,ns,-0.002140922,0.000966011,-2.216249495,0.027400245,neg,ns,1.562245549,0.0000392,0.0000332,1.180442027,0.23872941,pos,ns,0.949604715,Camkmt,Camkmt_Intron,17,85393599,85393648,85393599,85393600,50,-,CGTCAACAGCATCAGCTGCGGTCAAGCTGCCGGGTCTTGAGAGACCTTCT,"Intron (Camkmt-201/Camkmt, intron 5 of 10)",17,85090552,85458588,368037,1,Camkmt-201,303047,Camkmt-201,Camkmt,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,41,44,73582,ENSMUSG00000071037,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4446,cg10822690,-0.0000133,0.00000416,-3.204772363,0.001492496,loss,ns,0.00000453,0.00000707,0.640859869,0.522087192,pos,ns,-0.0000611,0.002072196,-0.029474813,0.976504873,neg,ns,0.010325585,-0.0000153,0.0000713,-0.214515807,0.830285882,neg,ns,0.929703418,Cacna2d3,Cacna2d3_Intron,14,28934881,28934930,28934881,28934882,50,-,CGATTGCTGTTTGAATAACAGATTAATTTAATAATCAGTGGGGTATTGGA,"Intron (Cacna2d3-201/Cacna2d3, intron 35 of 37)",14,28904943,29721864,816922,2,Cacna2d3-201,786934,Cacna2d3-201;Cacna2d3-208;Cacna2d3-204,Cacna2d3;Cacna2d3;Cacna2d3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,4,12294,ENSMUSG00000021991,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7923,cg14420219,0.00000331,0.00000173,1.916464821,0.056225258,gain,ns,-0.00000188,0.00000293,-0.640803297,0.522123903,neg,ns,-0.000397488,0.000858817,-0.462832085,0.643809452,neg,ns,0.191242651,0.0000166,0.0000295,0.561983988,0.574533025,pos,ns,0.956395074,Gtdc1,Gtdc1_Intron,2,44632905,44632954,44632953,44632954,50,-,CTGTACAACAAATAGCTATCAGACGCGGGCCAGAGAGCTGACATGGCTCG,"Intron (Gtdc1-203/Gtdc1, intron 6 of 10)",2,44564412,44861622,297211,2,Gtdc1-203,228668,Gtdc1-203;Gtdc1-201;Gtdc1-205;Gtdc1-210;Gtdc1-204;Gtdc1-211,Gtdc1;Gtdc1;Gtdc1;Gtdc1;Gtdc1;Gtdc1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,43,227835,ENSMUSG00000036890,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
407,cg03168366,0.0000811,0.0000141,5.731255245,2.36E-08,gain,yes,-0.0000154,0.000024,-0.640699769,0.522191086,neg,ns,0.027349476,0.007039352,3.88522621,0.000125026,pos,ns,3.902998855,0.000263015,0.000242083,1.086465609,0.278117125,pos,ns,0.593972371,Xbp1,Xbp1_Exon,11,5524262,5524311,5524262,5524263,50,+,CGGGTCTGCTGAGTCCGCAGCACTCAGACTACGTGCACCTCTGCAGCAGG,"Exon (Xbp1-201/Xbp1, exon 4 of 5)",11,5520659,5525893,5235,1,Xbp1-201,3603,Ccdc117-201;Xbp1-201;Xbp1-205;Xbp1-202;Xbp1-204;Xbp1-203,Ccdc117;Xbp1;Xbp1;Xbp1;Xbp1;Xbp1,17876;0;0;3257;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,22433,ENSMUSG00000020484,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
12769,cg24124633,0.000046,0.00000526,8.749335947,1.40E-16,gain,yes,0.00000573,0.00000894,0.64057244,0.522273723,pos,ns,0.012450245,0.002618494,4.754734835,0.00000305,pos,ns,5.516006343,-0.000185046,0.00009,-2.0549259,0.040723903,neg,ns,0.096689203,Phox2b,Phox2b_Promoter,5,67100393,67100442,67100393,67100394,50,+,CGCCGTGTGGTGTAAACAAACCCTGGATATTTTATATGAATTAAATGTGT,Promoter (1-2kb),5,67094399,67099301,4903,2,Phox2b-201,-1092,Phox2b-201;Phox2b-202,Phox2b;Phox2b,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,13,28,18935,ENSMUSG00000012520,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
27386,cg25139325,-0.0000219,0.0000109,-2.007869328,0.045524542,loss,ns,-0.0000119,0.0000185,-0.640567527,0.522276911,neg,ns,0.025014253,0.005431079,4.605761473,0.00000601,pos,ns,5.221317097,-0.000763029,0.000186774,-4.085299837,0.0000561,neg,ns,0.183980115,Pou2f1,Pou2f1_Intron,1,166001158,166001207,166001158,166001159,50,+,CGAATGTAAAATATAAACACGGCGTTGGGCTGTGAGTGGCTGTTATTAAA,"Intron (Pou2f1-208/Pou2f1, intron 1 of 16)",1,165865154,166002678,137525,2,Pou2f1-208,1471,Pou2f1-208;Pou2f1-206;Pou2f1-216;Pou2f1-209;Pou2f1-201;Pou2f1-215;Pou2f1-214;Pou2f1-211;Pou2f1-212,Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,18,18986,ENSMUSG00000026565,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
562,cg14986844,-0.00000355,0.00000115,-3.072367612,0.002312105,loss,ns,0.00000126,0.00000196,0.640536516,0.522297038,pos,ns,0.000206384,0.000574592,0.359184208,0.719701815,pos,ns,0.142847402,-0.0000256,0.0000198,-1.295299069,0.196180838,neg,ns,0.044341401,Celf2,Celf2_Exon,2,6872384,6872433,6872384,6872385,50,+,CGACCATCATGTCCGGGAGGAAATCCAGCTTGAAGGCAGAAGTCATGTTC,"Exon (Celf2-228/Celf2, exon 1 of 14)",2,6539694,7396000,856307,2,Celf2-201,523567,Celf2-201;Celf2-204;Celf2-214;Celf2-206;Celf2-226;Celf2-223;Celf2-221;Celf2-225;Celf2-228;Celf2-217;Celf2-210;Celf2-209;Celf2-219;Celf2-207;Celf2-218;Celf2-203,Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,24,14007,ENSMUSG00000002107,conserved gene and region,2,6871950,6872914,965,*,965,153,0.786528497,1.030579908,0.158549223,3.14E-151,CpGisland,TRUE,U3,Pr-B
10903,cg07530293,-0.00000219,0.0000011,-1.983142567,0.048233702,loss,ns,0.0000012,0.00000187,0.640528647,0.522302145,pos,ns,0.000611041,0.000548898,1.113213835,0.266479041,pos,ns,0.574336943,-0.0000189,0.0000189,-1.003404027,0.316448532,neg,ns,0.969716477,Pcbd2,Pcbd2_Intron,13,55766271,55766320,55766271,55766272,50,+,CGGAATCTGGTAATTACTTTAATTGATCACAAGATAGTTTCCTTGATCAC,"Intron (Pcbd2-201/Pcbd2, intron 2 of 3)",13,55727368,55776828,49461,1,Pcbd2-201,38903,Pcbd2-201;Pcbd2-202,Pcbd2;Pcbd2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,5,72562,ENSMUSG00000021496,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23470,cg01861038,-0.000102656,0.0000257,-3.998335062,0.0000798,loss,ns,-0.0000279,0.0000436,-0.640522887,0.522305884,neg,ns,-0.035708305,0.012778592,-2.794385042,0.005523733,neg,ns,2.257767361,0.000799708,0.000439455,1.819773651,0.069757842,pos,ns,0.748302204,Bmf,Bmf_Intron,2,118541027,118541076,118541027,118541028,50,+,CGAGCGATATAAACAGAGCCAGCCACAGAGCAAACACAGGGCCCCCAGCC,"Intron (Bmf-201/Bmf, intron 4 of 4)",2,118528757,118549687,20931,2,Bmf-201,8611,Bmf-201;Bmf-202;Bmf-205;Bmf-208;Bmf-207;Bmf-203;Bmf-206,Bmf;Bmf;Bmf;Bmf;Bmf;Bmf;Bmf,0;0;0;0;0;0;6523,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,3,171543,ENSMUSG00000040093,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U5,En-Sd
3991,cg14974683,-0.00000893,0.0000211,-0.422402297,0.67302422,loss,ns,-0.000023,0.0000359,-0.640494378,0.522324388,neg,ns,0.014336014,0.010525218,1.36206342,0.17416676,pos,ns,0.759034728,-0.001028843,0.000361961,-2.842412299,0.00477434,neg,ns,0.714589826,Luc7l,Luc7l_threeUTR,17,26257971,26258020,26257971,26257972,50,-,CGAGCAGATTATGAGATTGCAAGTAAAGAAAGAGACCTGTTTTTTGAATT,3' UTR,17,26252896,26280719,27824,1,Luc7l-201,5075,Luc7l-201;Luc7l-202;Luc7l-205;Luc7l-203;Luc7l-208;Luc7l-204;Luc7l-206;Luc7l-209,Luc7l;Luc7l;Luc7l;Luc7l;Luc7l;Luc7l;Luc7l;Luc7l,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,2,66978,ENSMUSG00000024188,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
106,cg23028577,-0.00000345,0.0000038,-0.907226617,0.364991637,loss,ns,0.00000413,0.00000645,0.640487103,0.522329109,pos,ns,0.002880528,0.001890002,1.524087061,0.128506444,pos,ns,0.891075095,-0.000204176,0.000065,-3.14131532,0.001844238,neg,ns,0.921114589,Adcy3,Adcy3_Exon,12,4194383,4194432,4194431,4194432,50,+,GACGAGAGCCAGAAGGACCAGCAGCAGTTCAACACCATGTACATGTACCG,"Exon (Adcy3-208/Adcy3, exon 4 of 21)",12,4133103,4213525,80423,1,Adcy3-208,61280,Adcy3-208;Adcy3-202;Adcy3-207;Adcy3-204;Adcy3-201;Adcy3-206;Cenpo-206;Cenpo-202,Adcy3;Adcy3;Adcy3;Adcy3;Adcy3;Adcy3;Cenpo;Cenpo,0;0;0;0;0;-389;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,104111,ENSMUSG00000020654,conserved gene and region,12,4194431,4194484,54,*,54,7,0.62962963,1.575,0.12962963,0.00000224,CpGisland,TRUE,U11,Tr-P
20949,cg14967435,-0.0000287,0.0000089,-3.227460487,0.001382606,loss,ns,0.00000968,0.0000151,0.640235546,0.522492397,pos,ns,0.00600598,0.004430314,1.355655528,0.176195579,pos,ns,0.754004994,-0.000370923,0.000152358,-2.434549865,0.015474393,neg,ns,0.575526205,Papola,Papola_fiveUTR,12,105809558,105809607,105809558,105809559,50,+,CGGTGGTGTTTCCTGGGCTATGCTAGTAGCAAGAACTTGCCAGCTTTATC,5' UTR,12,105784694,105838807,54114,1,Papola-202,24864,Papola-202;Papola-212;Papola-201;Papola-219;Papola-203;Papola-210;Papola-208;Papola-207;Papola-214;Papola-205;Papola-217;Papola-211;Papola-215;Papola-204;Papola-213;Papola-218;Papola-209;Papola-206,Papola;Papola;Papola;Papola;Papola;Papola;Papola;Papola;Papola;Papola;Papola;Papola;Papola;Papola;Papola;Papola;Papola;Papola,0;0;0;24847;0;0;0;0;0;24813;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,8,18789,ENSMUSG00000021111,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9693,cg19394405,0.00000178,0.00000313,0.56901096,0.569760718,gain,ns,0.0000034,0.00000532,0.640208298,0.522510086,pos,ns,-0.000793579,0.001557415,-0.509548725,0.61073019,neg,ns,0.214150611,0.00000441,0.0000536,0.082265122,0.934488979,pos,ns,0.95994131,Gm7481,Gm7481_Intergenic_upstream,12,50112068,50112117,50112116,50112117,50,+,GTTGGCTGTCCAAGGACCCTGATGCCAAATTGCGGAGGATATTCTTGTCG,Distal Intergenic,12,49840757,49841751,995,2,Gm7481-201,-270317,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,27,37,665077,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18807,cg04531630,-0.0000102,0.00000333,-3.050273922,0.00248373,loss,ns,-0.00000362,0.00000566,-0.640014791,0.522635713,neg,ns,-0.00266603,0.001657324,-1.608635196,0.108714025,neg,ns,0.963714423,0.000113918,0.000057,1.99872423,0.04651111,pos,ns,0.909323276,Srcin1,Srcin1_Exon,11,97525499,97525548,97525547,97525548,50,-,TCCAGCAGCCGGTTGATGTCCTTGGCACTGTACTGGGTCAGGGCTGCCCG,"Exon (Srcin1-208/Srcin1, exon 11 of 15)",11,97509340,97536945,27606,2,Srcin1-208,11397,Srcin1-208;Srcin1-203;Srcin1-209;Srcin1-202;Srcin1-201;Srcin1-211;Srcin1-210,Srcin1;Srcin1;Srcin1;Srcin1;Srcin1;Srcin1;Srcin1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,56013,ENSMUSG00000038453,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
585,cg24260949,-0.0000508,0.0000137,-3.695787117,0.000259109,loss,ns,-0.0000149,0.0000233,-0.639899082,0.52271084,neg,ns,-0.017903868,0.006837337,-2.618543863,0.009264412,neg,ns,2.033182146,0.0000471,0.000235135,0.200256104,0.841411599,pos,ns,0.795505088,Gm8725,Gm8725_Intron,13,7059270,7059319,7059270,7059271,50,+,CGCATGGCACTTCCTGTTTAATCACTTGGCAATTATCTGGTTTATATCTT,"Intron (Gm40662-202/Gm40662-202, intron 2 of 3)",13,7307802,7309134,1333,1,Gm8725-201,-248483,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,2,667611,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24280,cg19623897,0.0000059,0.00000307,1.923008727,0.055394814,gain,ns,-0.00000334,0.00000521,-0.639870735,0.522729246,neg,ns,0.001214479,0.001527708,0.794968247,0.427240187,pos,ns,0.369327904,-0.0000401,0.0000525,-0.762899762,0.446103313,neg,ns,0.945387384,Sema6d,Sema6d_Intron,2,124469019,124469068,124469067,124469068,50,-,AGACCAAAAATAATTATCCTGTACTCCAATCTAGAAAACATAAATAATCG,"Intron (Sema6d-208/Sema6d, intron 4 of 20)",2,124089969,124667769,577801,1,Sema6d-208,379050,Sema6d-208;Sema6d-211,Sema6d;Sema6d,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,5,214968,ENSMUSG00000027200,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8909,cg14073661,0.00000891,0.00000206,4.32418048,0.0000207,gain,ns,0.00000224,0.0000035,0.639837303,0.522750954,pos,ns,0.002387811,0.001025624,2.32815527,0.02054693,pos,ns,1.687253053,-0.0000122,0.0000353,-0.344837313,0.730450517,neg,ns,0.026349915,Helt,Helt_Promoter,8,46294786,46294835,46294834,46294835,50,+,CTTTATTTGTCCGGACATCCCGGCAGGTGTGGGGCTGCGGCTGGCACACG,Promoter (<=1kb),8,46292039,46294671,2633,2,Helt-201,-115,Helt-201;Helt-202;Helt-203,Helt;Helt;Helt,0;-797;-1451,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,15,22,234219,ENSMUSG00000047171,conserved gene and region,8,46294678,46294897,220,*,220,21,0.65,0.923630548,0.095454546,6.99E-16,CpGisland,TRUE,U13,Hc-P
23823,cg03410722,-0.00000364,0.00000121,-3.012082548,0.002808261,loss,ns,-0.00000131,0.00000205,-0.639783187,0.522786094,neg,ns,-0.00102355,0.000601725,-1.701026896,0.089940707,neg,ns,1.046043701,0.0000136,0.0000207,0.655406405,0.512692199,pos,ns,0.048495955,Galnt2l,Galnt2l_Intron,8,120487919,120487968,120487967,120487968,50,-,CATTAGGGGAGACAAATCTGCTGTCAGGCAGCCAGCTTTCCAATTTACCG,"Intron (Galnt2l-201/Galnt2l, intron 1 of 15)",8,119910841,124345722,4434882,1,Galnt2l-201,577078,Galnt2l-201;Gse1-206;Gse1-201,Galnt2l;Gse1;Gse1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,28,,NA,mapped to different genes,8,120487967,120488062,96,*,96,12,0.65625,1.230769231,0.125,1.14E-10,CpGisland,TRUE,U1,Pr-A
10886,cg04122028,0.000000612,0.000000706,0.867085993,0.386565551,gain,ns,-0.000000767,0.0000012,-0.63967427,0.522856822,neg,ns,-0.000287433,0.000351405,-0.817951835,0.41401294,neg,ns,0.382986085,0.00000757,0.0000121,0.626560033,0.531408786,pos,ns,0.975062451,Ralgapa1,Ralgapa1_Exon,12,55735114,55735163,55735162,55735163,50,-,TTAGCACTGCGTATATAGGCCGATGGCAGAGCACATTCACCAATGGATCG,"Exon (Ralgapa1-204/Ralgapa1, exon 17 of 42)",12,55602896,55820767,217872,2,Ralgapa1-211,85604,Ralgapa1-211;Ralgapa1-212;Ralgapa1-201;Ralgapa1-202;Ralgapa1-204;Ralgapa1-207;Ralgapa1-208,Ralgapa1;Ralgapa1;Ralgapa1;Ralgapa1;Ralgapa1;Ralgapa1;Ralgapa1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,15,56784,ENSMUSG00000021027,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22967,cg16564092,-0.00000867,0.00000287,-3.018955794,0.002747126,loss,ns,-0.00000312,0.00000488,-0.639654737,0.522869506,neg,ns,-0.001004505,0.001430066,-0.702418155,0.482945513,neg,ns,0.316101864,0.0000845,0.0000492,1.717522096,0.086882484,pos,ns,0.949383213,Cnot2,Cnot2_threeUTR,10,116486081,116486130,116486081,116486082,50,-,CGTAAGCCAATTGCCAGATCCTCAAGGAATTAAAACCAGGGTGCCTGAGC,3' UTR,10,116485161,116581511,96351,2,Cnot2-210,95381,Cnot2-210;Cnot2-204;Cnot2-212;Cnot2-203;Cnot2-202;Cnot2-213;Cnot2-209,Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2;Cnot2,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,9,15,72068,ENSMUSG00000020166,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
574,cg17689098,0.00000114,0.00000863,0.132598122,0.894597243,gain,ns,0.00000938,0.0000147,0.639580222,0.522917898,pos,ns,0.001764361,0.004297219,0.410582051,0.681662667,pos,ns,0.16643049,-0.0000828,0.000147781,-0.560420075,0.575597724,neg,ns,0.917224239,Tox,Tox_Intron,4,6913815,6913864,6913863,6913864,50,+,ATGGTATTTTTATAATACTGATACATCAAATGGGACCTTAATGAACCCCG,"Intron (Tox-201/Tox, intron 1 of 8)",4,6686353,6990799,304447,2,Tox-201,76935,Tox-201;Tox-203;Tox-204,Tox;Tox;Tox,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,15,252838,ENSMUSG00000041272,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
10850,cg25734186,-0.000000924,0.000001,-0.920750132,0.357896854,loss,ns,0.00000109,0.0000017,0.639504806,0.522966877,pos,ns,0.001260123,0.000499282,2.523869809,0.012106452,pos,ns,1.916983131,-0.0000448,0.0000172,-2.606790851,0.009581262,neg,ns,0.973786081,Vti1a,Vti1a_threeUTR,19,55627269,55627318,55627269,55627270,50,-,CGTTCATTAACAAATTGCATTAAACAACTGTTAAGGGCTAATGATTTGTT,3' UTR,19,55316350,55627309,310960,1,Vti1a-202,310919,Vti1a-202;Vti1a-201,Vti1a;Vti1a,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,8,32,53611,ENSMUSG00000024983,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11631,cg03843987,-0.000000743,0.0000019,-0.390524355,0.696417072,loss,ns,-0.00000207,0.00000323,-0.639484131,0.522980305,neg,ns,-0.000254559,0.000946557,-0.268931796,0.788161063,neg,ns,0.103385024,-0.0000181,0.0000326,-0.555082347,0.579238638,neg,ns,0.948658185,Ptbp3,Ptbp3_threeUTR,4,59493248,59493297,59493248,59493249,50,-,CGAGTGAAGTCTCTGCTTTTGTCATTATTATATTTCACATTAAGGCTGGT,Promoter (<=1kb),4,59481443,59493285,11843,2,Ptbp3-207,0,Ptbp3-201;Ptbp3-212;Ptbp3-202;Ptbp3-210;Ptbp3-208;Ptbp3-205;Ptbp3-207;Ptbp3-213;Ptbp3-203;Ptbp3-211,Ptbp3;Ptbp3;Ptbp3;Ptbp3;Ptbp3;Ptbp3;Ptbp3;Ptbp3;Ptbp3;Ptbp3,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,5,230257,ENSMUSG00000028382,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14742,cg23001333,-0.000012,0.00000789,-1.520921189,0.129298921,loss,ns,0.00000857,0.0000134,0.639455228,0.522999076,pos,ns,0.002491585,0.00392682,0.634504321,0.526219714,pos,ns,0.278832886,-0.000381301,0.000135043,-2.823552374,0.005056843,neg,ns,0.717734405,Epha4,Epha4_threeUTR,1,77506634,77506683,77506682,77506683,50,+,TACATTTTTGGCACATCTTTCTCTTCTGAGTTGTTGACACAGGAGCCTCG,3' UTR,1,77367185,77515088,147904,2,Epha4-201,8405,Epha4-201;Epha4-205;Epha4-204;Epha4-207;Epha4-206;Epha4-202,Epha4;Epha4;Epha4;Epha4;Epha4;Epha4,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,9,13838,ENSMUSG00000026235,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15186,cg25694286,-0.000000167,0.000000577,-0.290138358,0.771904372,loss,ns,-0.000000626,0.00000098,-0.639388196,0.523042613,neg,ns,-0.000467457,0.000286976,-1.628907838,0.104348278,neg,ns,0.981514713,0.0000082,0.00000987,0.831135941,0.406536532,pos,ns,0.987514711,Ddx17,Ddx17_threeUTR,15,79533021,79533070,79533069,79533070,50,-,ATCCCGTCTCTTTGCCTTTTATTTTTGGCGGCCTCCTTTCGAAAACTCCG,3' UTR,15,79527736,79546741,19006,2,Ddx17-201,13671,Ddx17-201;Ddx17-203;Ddx17-204;Ddx17-202,Ddx17;Ddx17;Ddx17;Ddx17,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,9,14,67040,ENSMUSG00000055065,conserved gene and region,15,79532980,79533149,170,*,170,13,0.594117647,0.886126704,0.076470588,9.43E-09,CpGisland,TRUE,U10,Tr-S
15031,cg22154228,0.0000175,0.00000214,8.150230438,9.06E-15,gain,yes,-0.00000233,0.00000364,-0.639203525,0.523162567,neg,ns,0.001553217,0.001066251,1.456709433,0.146208718,pos,ns,0.835026732,0.000003,0.0000367,0.081903786,0.934776079,pos,ns,0.940869802,Slc10a7,Slc10a7_Intron,8,78571391,78571440,78571391,78571392,50,-,CGGTTATTTAAGAGTCCCCATGTGCTTAGAAAGGAATCTGAATATATGTG,"Intron (Slc10a7-211/Slc10a7, intron 4 of 10)",8,78509346,78712757,203412,1,Slc10a7-211,62045,Slc10a7-211;Slc10a7-202;Slc10a7-201;Slc10a7-207;Slc10a7-209;Slc10a7-204;Slc10a7-206,Slc10a7;Slc10a7;Slc10a7;Slc10a7;Slc10a7;Slc10a7;Slc10a7,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,6,76775,ENSMUSG00000031684,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26565,cg02895114,0.000047,0.000013,3.610213093,0.00035666,gain,ns,0.0000141,0.0000221,0.639193902,0.523168818,pos,ns,0.012215789,0.006483964,1.884000228,0.060500614,pos,ns,1.218240219,0.0000724,0.000222983,0.324521528,0.745762098,pos,ns,0.674968891,Casz1,Casz1_Intron,4,148921858,148921907,148921906,148921907,50,-,TATTGAGGGACAAACATAATCAGCACTGACGCAAATTAGATGGTTATTCG,"Intron (Casz1-201/Casz1, intron 4 of 15)",4,148804429,148945129,140701,1,Casz1-201,117429,Casz1-201;Casz1-202;Casz1-206,Casz1;Casz1;Casz1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,94,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19305,cg16925284,-2.95E-08,0.000000452,-0.065182998,0.948070312,loss,ns,-0.000000491,0.000000768,-0.639109107,0.523223902,neg,ns,0.000378945,0.000225057,1.68377437,0.093231903,pos,ns,1.030435453,-0.000015,0.00000774,-1.936423452,0.053724525,neg,ns,0.011289282,Gm49450,Gm49450_fiveUTR,15,98953503,98953552,98953551,98953552,50,+,GTTGCTTCTTACAGCGCGACTCTTAGGCGGTCGATGTAAGAGAACCTGCG,Promoter (<=1kb),15,98932137,98953551,21415,2,Gm49450-201,0,Gm49450-201;Tuba1a-201,Gm49450;Tuba1a,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,1,,NA,mapped to different genes,15,98953356,98953569,214,*,214,17,0.612149533,0.866190476,0.079439252,1.39E-11,CpGisland,TRUE,NA,NRS
16540,cg08036273,0.000053,0.0000104,5.107053649,0.000000573,gain,yes,0.0000113,0.0000176,0.638989228,0.523301782,pos,ns,0.002481383,0.005162793,0.48062805,0.631119885,pos,ns,0.199888136,0.0000891,0.000177548,0.50156216,0.616331544,pos,ns,0.720228795,Camkmt,Camkmt_Intron,17,85393643,85393692,85393691,85393692,50,+,CCTTCTAGATTGACTTACTTTCGGATCATATTGATTTTATGGTTGCCTCG,"Intron (Camkmt-201/Camkmt, intron 5 of 10)",17,85090552,85458588,368037,1,Camkmt-201,303091,Camkmt-201,Camkmt,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,41,44,73582,ENSMUSG00000071037,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20313,cg01153660,0.00000565,0.00000235,2.405395215,0.016740576,gain,ns,-0.00000255,0.00000399,-0.63892613,0.523342776,neg,ns,0.001125784,0.001168689,0.963287938,0.336153849,pos,ns,0.473461912,-0.000037,0.0000402,-0.920351402,0.358104781,neg,ns,0.030859868,Hoxc5,Hoxc5_Intron,15,102998050,102998099,102998050,102998051,50,+,CGACCGCGGCGCCCATTTGCACACGCTACACAAATGCATCGCATTCCCGG,"Intron (Hoxc5-202/Hoxc5, intron 1 of 1)",15,102967443,103015676,48234,1,Hoxc5-202,30607,Hoxc5-202;Hoxc6-202;Hoxc6-203;Hoxc8-201;Hoxc8-202,Hoxc5;Hoxc6;Hoxc6;Hoxc8;Hoxc8,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,46,134,15424,ENSMUSG00000022485,conserved gene but different region,15,102997967,102998098,132,*,132,9,0.613636364,0.776470588,0.068181818,0.00000904,CpGisland,TRUE,U13,Hc-P
5027,cg04483809,-0.00000554,0.00000207,-2.678885547,0.007780952,loss,ns,0.00000224,0.00000351,0.638896109,0.523362282,pos,ns,-0.001189278,0.001028858,-1.155920657,0.248603694,neg,ns,0.604492422,-0.0000261,0.0000354,-0.738498634,0.460770223,neg,ns,0.032244349,Cpeb4,Cpeb4_Promoter,11,31870877,31870926,31870925,31870926,50,+,CCGGAAGTGTCTCTGGGTCTTTCCAGCTGGTTGTCATTTCACTCGGCTCG,Promoter (1-2kb),11,31872211,31931577,59367,1,Cpeb4-201,-1285,Cpeb4-201;Cpeb4-202;Cpeb4-203,Cpeb4;Cpeb4;Cpeb4,0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,10,67579,ENSMUSG00000020300,conserved gene but different region,11,31870791,31871128,338,*,338,37,0.671597633,0.991752577,0.109467456,5.49E-30,CpGisland,TRUE,U1,Pr-A
4794,cg05196683,0.00000199,0.00000155,1.280420519,0.201354496,gain,ns,-0.00000168,0.00000264,-0.638807696,0.523419727,neg,ns,0.001001014,0.000772533,1.295755527,0.196023677,pos,ns,0.707691469,-0.0000441,0.0000266,-1.660787273,0.097767206,neg,ns,0.965334936,Kmt2b,Kmt2b_Exon,7,30587271,30587320,30587271,30587272,50,+,CGCAGAGCGCAGGGAACTGGGGGCCACATCTTCATCTGAATGAAAACCCT,"Exon (Kmt2b-201/Kmt2b, exon 2 of 37)",7,30568858,30588717,19860,2,Kmt2b-201,1397,Kmt2b-201;Kmt2b-202;Kmt2b-206;Kmt2b-203;Zbtb32-202;Zbtb32-201,Kmt2b;Kmt2b;Kmt2b;Kmt2b;Zbtb32;Zbtb32,0;0;0;-2197;5622;11549,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,7,75410,ENSMUSG00000006307,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3331,cg14050475,0.000000868,0.00000208,0.416939073,0.677011541,gain,ns,-0.00000226,0.00000354,-0.63880017,0.523424617,neg,ns,0.000857273,0.001036268,0.827269314,0.408720774,pos,ns,0.388573288,-0.0000265,0.0000356,-0.743114669,0.457975036,neg,ns,0.946814263,0610010F05Rik,0610010F05Rik_Exon,11,23620354,23620403,23620402,23620403,50,-,ATAGATAAATATTCAGCAAAGTACTTCATTTCTGATATCAAAAGATCTCG,"Exon (0610010F05Rik-207/0610010F05Rik, exon 6 of 23)",11,23564961,23633549,68589,2,0610010F05Rik-207,13146,0610010F05Rik-207;0610010F05Rik-201;0610010F05Rik-208;0610010F05Rik-203;0610010F05Rik-202;0610010F05Rik-206,0610010F05Rik;0610010F05Rik;0610010F05Rik;0610010F05Rik;0610010F05Rik;0610010F05Rik,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,71675,ENSMUSG00000042208,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8754,cg15456734,-0.00000562,0.00000433,-1.298680685,0.195018733,loss,ns,-0.0000047,0.00000735,-0.638599166,0.523555229,neg,ns,0.000140241,0.002154565,0.0650903,0.948144058,pos,ns,0.023125672,0.00000199,0.0000741,0.026840467,0.978604246,pos,ns,0.900512399,Atxn1,Atxn1_Intron,13,45709599,45709648,45709647,45709648,50,-,TACAAAAATTCTATTGCTAAAACAATGGAATTCTCCCGGGAATGACTTCG,"Intron (Atxn1-201/Atxn1, intron 5 of 7)",13,45549755,45964976,415222,2,Atxn1-201,255328,Atxn1-201;Atxn1-202;Atxn1-203,Atxn1;Atxn1;Atxn1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,10,20238,ENSMUSG00000046876,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8520,cg01812599,0.0000954,0.0000125,7.624241193,3.02E-13,gain,yes,0.0000136,0.0000212,0.638576389,0.523570031,pos,ns,-0.005711506,0.006224978,-0.917514222,0.359586508,neg,ns,0.444196612,0.00035227,0.000214076,1.64553192,0.100873656,pos,ns,0.310414218,Lbx1,Lbx1_Intergenic_upstream,19,45293645,45293694,45293693,45293694,50,-,TAAGTGGAGTTTCTGCAATGGTAATTAGGAGGGCCCTCATTACCCTGGCG,Distal Intergenic,19,45232684,45235812,3129,2,Lbx1-201,-57882,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,15,50,16814,ENSMUSG00000025216,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
27464,cg02136812,-0.0000363,0.00000702,-5.176920236,0.000000406,loss,yes,-0.00000761,0.0000119,-0.63854117,0.523592918,neg,ns,-0.00521822,0.003492581,-1.494087112,0.136170001,neg,ns,0.865918559,0.0000698,0.00012011,0.580882073,0.561741991,pos,ns,0.926859641,Pbx1,Pbx1_Intron,1,168300363,168300412,168300411,168300412,50,+,TTTAACACTCTGACAGTAACAGTCTATAATGTTTCTATTCTACAAAACCG,"Intron (Pbx1-208/Pbx1, intron 2 of 7)",1,168119364,168432270,312907,2,Pbx1-208,131858,Pbx1-208;Pbx1-205;Pbx1-206;Pbx1-201;Pbx1-202;Pbx1-204,Pbx1;Pbx1;Pbx1;Pbx1;Pbx1;Pbx1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,84,18514,ENSMUSG00000052534,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23096,cg09931937,-0.00000567,0.00000193,-2.934012387,0.003595819,loss,ns,0.00000209,0.00000328,0.638489818,0.523626291,pos,ns,-0.000426339,0.000961043,-0.443621231,0.657625918,neg,ns,0.182021079,0.000000321,0.0000331,0.009698027,0.992268453,pos,ns,0.962738456,Rnf220,Rnf220_Intron,4,117297730,117297779,117297730,117297731,50,-,CGCCTCATTAAAAGTGGCCTTTTGGAAGGTAAAATTATCATTGTAAGCGA,"Intron (Rnf220-201/Rnf220, intron 4 of 14)",4,117271463,117497052,225590,2,Rnf220-201,199273,Rnf220-201;Rnf220-202;Rnf220-208,Rnf220;Rnf220;Rnf220,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24596,cg21508496,0.0000269,0.00000801,3.357058551,0.000885899,gain,ns,0.00000869,0.0000136,0.638378731,0.523698487,pos,ns,0.000845669,0.00398578,0.212171558,0.83211263,pos,ns,0.079817886,0.0000213,0.000137071,0.15541877,0.876592337,pos,ns,0.854972106,Agap2,Agap2_Exon,10,127090126,127090175,127090126,127090127,50,+,CGCTTCGGGAAACCAGCCAAGCGCAAAATGTGGAAACTAAAATCCTTTGG,"Exon (Agap2-203/Agap2, exon 14 of 19)",10,127075284,127093169,17886,1,Agap2-203,14842,Agap2-203;Agap2-201;Agap2-202,Agap2;Agap2;Agap2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,216439,ENSMUSG00000025422,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
539,cg00774005,0.00000959,0.0000128,0.747474152,0.455344002,gain,ns,0.0000139,0.0000218,0.638220843,0.52380111,pos,ns,0.003683237,0.00638331,0.577010503,0.564351137,pos,ns,0.248450596,-0.000100521,0.000219521,-0.457911679,0.647336693,neg,ns,0.24810849,Dlx6,Dlx6_Promoter,6,6861799,6861848,6861799,6861800,50,-,CGGCAGTTAGACAACCATTTTGATAAGAGGATAATTGAGGCGACACTGGT,Promoter (1-2kb),6,6863334,6868568,5235,1,Dlx6-202,-1535,Dlx6-203;Dlx6-202;Dlx6-201;Dlx6-204,Dlx6;Dlx6;Dlx6;Dlx6,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,9,36,13396,ENSMUSG00000029754,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
3732,cg05191959,0.000000453,0.000000342,1.323875699,0.186519702,gain,ns,0.000000371,0.000000581,0.638180519,0.52382732,pos,ns,0.000389031,0.000170171,2.28612309,0.022921418,pos,ns,1.639758517,-0.00000644,0.00000585,-1.099980898,0.272193896,neg,ns,0.008153298,Pou2f2,Pou2f2_Promoter,7,25179896,25179945,25179896,25179897,50,-,CGCGAGCCCAGGCGCGCGCCATCCCCGGCTCCCACCTTGTCCCCATGGCA,Promoter (<=1kb),7,25120618,25179726,59109,2,Pou2f2-208,-219,Pou2f2-208,Pou2f2,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,11,29,18987,ENSMUSG00000008496,conserved gene but different region,7,25179573,25180057,485,*,485,61,0.771134021,0.853947179,0.125773196,3.02E-53,CpGisland,TRUE,U3,Pr-B
5239,cg23373574,-0.00000577,0.0000014,-4.126964333,0.0000473,loss,ns,0.00000152,0.00000237,0.638060537,0.523905313,pos,ns,0.000189699,0.000695621,0.27270502,0.785261539,pos,ns,0.104985673,-0.00000352,0.0000239,-0.147170677,0.883092972,neg,ns,0.052840771,Atxn7l1,Atxn7l1_fiveUTR,12,33147769,33147818,33147769,33147770,50,+,CGGCTGCTGCTGCCGAAGGAACAGGGAAAAAGCAACAAGAAGGAAGAGCA,Promoter (<=1kb),12,33147774,33326133,178360,1,Atxn7l1-206,0,Atxn7l1-201;Atxn7l1-203;Atxn7l1-212;Atxn7l1-206;Atxn7l1-204;Atxn7l1-208,Atxn7l1;Atxn7l1;Atxn7l1;Atxn7l1;Atxn7l1;Atxn7l1,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,24,380753,ENSMUSG00000020564,conserved gene but different region,12,33147399,33147783,385,*,385,47,0.711688312,0.979166667,0.122077922,1.93E-40,CpGisland,TRUE,U2,Pr-W
25010,cg01808294,-0.00000452,0.00000214,-2.11524556,0.035206503,loss,ns,0.00000231,0.00000363,0.637839919,0.52404874,pos,ns,0.001647336,0.001063288,1.549284609,0.122333578,pos,ns,0.912454321,-0.0000626,0.0000366,-1.711891262,0.087916821,neg,ns,0.926653817,Fgfr2,Fgfr2_Intron,7,131497648,131497697,131497696,131497697,50,-,CGAAGCTGTTATGACACTAGAAATTGCTTTATTGATAGCCTCGCCTCTCG,"Intron (Fgfr2-217/Fgfr2, intron 2 of 6)",7,130162451,133123350,2960900,2,Fgfr2-217,1625653,Fgfr2-217;Gm45105-201,Fgfr2;Gm45105,0;-3745,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,58,79,14183,ENSMUSG00000030849,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16052,cg07163218,0.00000106,0.00000147,0.723110011,0.470157523,gain,ns,-0.00000159,0.00000249,-0.637740539,0.524113355,neg,ns,-0.0000225,0.000730058,-0.030787739,0.97545863,neg,ns,0.010791145,-0.0000252,0.0000251,-1.003818681,0.31624891,neg,ns,0.967281247,Bnc2,Bnc2_Exon,4,84293460,84293509,84293460,84293461,50,+,CGATTATTGCTCTCAATGAAAGTCCTTATATCTGAGTCTGTCTTTGAAGA,"Exon (Bnc2-201/Bnc2, exon 7 of 8)",4,84275095,84675034,399940,2,Bnc2-201,381525,Bnc2-201;Bnc2-202;Bnc2-214;Bnc2-218;Bnc2-215;Bnc2-222;Bnc2-216;Bnc2-213;Bnc2-219;Bnc2-206;Bnc2-211;Bnc2-205;Bnc2-217;Bnc2-207;Bnc2-212,Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,91,242509,ENSMUSG00000028487,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17813,cg20292384,-0.0000217,0.00000856,-2.540492295,0.011557246,loss,ns,0.00000927,0.0000145,0.637443472,0.524306525,pos,ns,-0.00334987,0.004258713,-0.786591921,0.432121681,neg,ns,0.364393943,-0.0000435,0.000146457,-0.297230049,0.766489952,neg,ns,0.61810526,Irx3,Irx3_Intergenic_upstream,8,91827785,91827834,91827833,91827834,50,+,ATGCCCAGGCCTGCTGTTGCCCAGCTTGTTTGCAGATTAATTGCTTTTCG,Distal Intergenic,8,91798525,91802067,3543,2,Irx3-202,-25718,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,15,36,16373,ENSMUSG00000031734,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10599,cg06929306,-0.00000636,0.00000307,-2.069743947,0.039304398,loss,ns,0.00000333,0.00000522,0.637389119,0.524341873,pos,ns,-0.002132544,0.001528435,-1.395247116,0.163940054,neg,ns,0.785314926,0.0000498,0.0000526,0.948027257,0.343854007,pos,ns,0.942784432,Acin1,Acin1_Exon,14,54649750,54649799,54649798,54649799,50,-,CCAGTTTCCATGATGTCAAGACAGTTCACTGGCGGTGGCCAGGCTCAGCG,"Exon (Acin1-225/Acin1, exon 1 of 6)",14,54642161,54653616,11456,2,Acin1-208,3817,Acin1-208;Acin1-216;Acin1-202;Acin1-201;Acin1-219;Acin1-218;Acin1-221;Acin1-224;Acin1-203;Acin1-222;Acin1-205;Acin1-211;Acin1-225;Acin1-207;Acin1-204;Acin1-226;Acin1-213;Acin1-214;Acin1-209;Acin1-220;Gm17606-201,Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Gm17606,0;0;0;0;0;0;0;0;0;-3884;0;-3703;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,22,56215,ENSMUSG00000022185,conserved gene but different region,14,54649663,54649799,137,*,137,10,0.664233577,0.685685686,0.072992701,0.00000123,CpGisland,TRUE,U10,Tr-S
889,cg06153489,0.0000781,0.00000925,8.44235997,1.21E-15,gain,yes,0.00001,0.0000157,0.63730732,0.524395072,pos,ns,0.014628367,0.004605724,3.176127379,0.001642786,pos,ns,2.784419073,-0.00039911,0.00015839,-2.519783166,0.012244984,neg,ns,0.152243279,Gm13220,Gm13220_Intron,2,9433565,9433614,9433613,9433614,50,-,AGTTTTTAATCTGCCTTTAATCCCATAGATTTTAAATATTCCCAGCACCG,"Intron (Gm13219-201/Gm13219-201, intron 2 of 3)",2,9575836,9576343,508,1,Gm13220-201,-142271,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,8,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25276,cg12981061,0.0000834,0.0000158,5.290708793,0.000000231,gain,yes,0.0000171,0.0000268,0.637195203,0.524467994,pos,ns,0.022741531,0.007843246,2.899504978,0.004004417,pos,ns,2.397460664,-0.000472508,0.000269729,-1.751789889,0.080798771,neg,ns,0.191562185,Gm43559,Gm43559_Intergenic_upstream,3,134302792,134302841,134302792,134302793,50,-,CGAGCCGGCACTAATAGTCCAAGGCAGATATTGAAAAGCAGCACAGGGCC,Distal Intergenic,3,134272045,134272510,466,2,Gm43559-201,-30331,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,7,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19880,cg10587989,-0.0000096,0.00000635,-1.51302315,0.131292576,loss,ns,0.00000687,0.0000108,0.637003799,0.524592495,pos,ns,0.002675289,0.003158154,0.847105487,0.397589824,pos,ns,0.40056474,-0.000115136,0.000108609,-1.060102003,0.289923448,neg,ns,0.611048304,Itgb1bp2,Itgb1bp2_fiveUTR,X,101449046,101449095,101449046,101449047,50,+,CGCCTCCTGAACTAAAGATAGAAACAGCTGGCCCTTCCAGGCAGCTAAAA,Promoter (<=1kb),20,101449088,101453541,4454,1,Itgb1bp2-201,0,Itgb1bp2-201;Itgb1bp2-202;Nono-201;Nono-205;Nono-204;Nono-207;Nono-203,Itgb1bp2;Itgb1bp2;Nono;Nono;Nono;Nono;Nono,0;0;0;6455;0;0;3223,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,2,26549,ENSMUSG00000031312,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6157,cg21052988,-0.00000666,0.00000407,-1.636597623,0.102729332,loss,ns,-0.0000044,0.00000691,-0.636976572,0.524610206,neg,ns,-0.005815859,0.002024844,-2.872249881,0.004356607,neg,ns,2.360851628,-0.0000915,0.0000696,-1.314604611,0.189614562,neg,ns,0.844145921,Ankmy2,Ankmy2_Exon,12,36182417,36182466,36182465,36182466,50,+,CCCAGGGACTGGATAAAGAGCCAAAACTGCCCCCAAAGTTGGCAGGCCCG,"Exon (Ankmy2-201/Ankmy2, exon 5 of 10)",12,36157114,36197291,40178,1,Ankmy2-201,25303,Ankmy2-201;Ankmy2-202;Ankmy2-203,Ankmy2;Ankmy2;Ankmy2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,217473,ENSMUSG00000036188,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4724,cg24131901,-0.0000767,0.0000144,-5.32337631,0.000000196,loss,yes,-0.0000156,0.0000245,-0.636797888,0.52472645,neg,ns,-0.014620771,0.007174394,-2.037910312,0.042407553,neg,ns,1.372556783,0.000286286,0.000246727,1.160336675,0.246804574,pos,ns,0.806962052,Btbd9,Btbd9_Intron,17,30307284,30307333,30307332,30307333,50,+,CTATTAGCACCTGCTAGTGTAATATGCAGCTGGCAGTTTCAGAATAACCG,"Intron (Btbd9-202/Btbd9, intron 7 of 10)",17,30215524,30576488,360965,2,Btbd9-202,269155,Btbd9-202;Btbd9-201;Btbd9-218;Btbd9-208;Btbd9-221;Btbd9-224;Btbd9-205;Btbd9-219;Btbd9-209;Btbd9-206;Btbd9-220;Btbd9-210;Btbd9-212;Btbd9-207;Btbd9-223,Btbd9;Btbd9;Btbd9;Btbd9;Btbd9;Btbd9;Btbd9;Btbd9;Btbd9;Btbd9;Btbd9;Btbd9;Btbd9;Btbd9;Btbd9,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,5,224671,ENSMUSG00000062202,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21141,cg09793883,0.000175584,0.0000233,7.522379729,5.86E-13,gain,yes,-0.0000253,0.0000397,-0.636794147,0.524728884,neg,ns,0.029757126,0.011617348,2.561438835,0.01089687,pos,ns,1.962698215,-0.001457751,0.00039952,-3.648758187,0.00030908,neg,ns,0.583229001,Gm17304,Gm17304_Intron,5,106560697,106560746,106560745,106560746,50,-,ATTTACAAGCTGCAGACAACAACCTAATGAGGGAGCCAAGCTGTTAGGCG,"Intron (Gm28050-202/Gm28050-202, intron 1 of 2)",5,106609098,106609201,104,1,Gm17304-201,-48401,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,35,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
16268,cg10382948,-0.00000284,0.00000201,-1.414644341,0.15817643,loss,ns,-0.00000217,0.00000341,-0.636767491,0.524746226,neg,ns,-0.0001672,0.000999889,-0.16721856,0.867307107,neg,ns,0.061827095,-0.0000421,0.0000344,-1.222882164,0.22230305,neg,ns,0.957464835,Zdhhc5,Zdhhc5_Exon,2,84694582,84694631,84694582,84694583,50,-,CGGACCCCTGAGAGTTCCTCTATGTGGTAGAGGACATAAAGGAGGCCAAA,"Exon (Zdhhc5-201/Zdhhc5, exon 5 of 12)",2,84687970,84715180,27211,2,Zdhhc5-201,20549,Zdhhc5-201,Zdhhc5,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,228136,ENSMUSG00000034075,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21617,cg02446738,0.00000313,0.00000614,0.509990736,0.610420851,gain,ns,-0.00000664,0.0000104,-0.636758364,0.524752164,neg,ns,0.003313879,0.0030563,1.084278025,0.279084088,pos,ns,0.554264925,-0.000195559,0.000105106,-1.860590236,0.06374878,neg,ns,0.867961598,Zfhx3,Zfhx3_Intron,8,108578443,108578492,108578443,108578444,50,-,CGGGACTCATTGGGATGGCAGGATAAAAATTAATTAGAGGCAGTTTGGAA,"Intron (Zfhx3-204/Zfhx3, intron 4 of 15)",8,107942644,108961630,1018987,1,Zfhx3-204,635799,Zfhx3-204,Zfhx3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,114,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6641,cg14637733,-0.00000582,0.00000289,-2.013569255,0.044918646,loss,ns,-0.00000313,0.00000491,-0.636589552,0.524862,neg,ns,-0.001623396,0.00143874,-1.128345847,0.260046365,neg,ns,0.584949212,0.000042,0.0000495,0.849730444,0.396130727,pos,ns,0.931491632,Uri1,Uri1_Intergenic_downstream,7,37897224,37897273,37897272,37897273,50,-,AAATATTTTACATATCATTAGACATTAAAAACAAAGATTTATGCTGCTCG,Distal Intergenic,7,37961301,37962528,1228,2,Uri1-203,65304,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,19,27,19777,ENSMUSG00000030421,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7359,cg14082875,0.0000556,0.00000903,6.163875657,2.21E-09,gain,yes,0.00000976,0.0000153,0.636587008,0.524863656,pos,ns,0.003019914,0.004493147,0.672115502,0.502010777,pos,ns,0.299286959,0.0000393,0.000154519,0.254582201,0.799214604,pos,ns,0.119226521,Pou4f3,Pou4f3_Promoter,18,42394804,42394853,42394852,42394853,50,-,TGACAGGCACTAGCTTCATGTTTTTTTCATGTCGCCCAGAACAATCGCCG,Promoter (<=1kb),18,42394539,42397249,2711,1,Pou4f3-201,265,Pou4f3-201;Pou4f3-202,Pou4f3;Pou4f3,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,4,17,18998,ENSMUSG00000024497,conserved gene and region,18,42394836,42394895,60,*,60,8,0.683333333,1.379310345,0.133333333,0.000000221,CpGisland,TRUE,U13,Hc-P
9629,cg03187378,0.0000957,0.00000877,10.91550861,1.09E-23,gain,yes,-0.00000948,0.0000149,-0.636571869,0.524873507,neg,ns,-0.003482337,0.004363792,-0.798006984,0.425477305,neg,ns,0.3711236,0.000419879,0.00015007,2.797879091,0.005465812,pos,ns,0.29203624,Kif5c,Kif5c_Exon,2,49619666,49619715,49619666,49619667,50,-,CGGATCCAGCCGAATGCAGCATCAAAGTGATGTGCCGGTTCCGGCCCCTC,Promoter (<=1kb),2,49619298,49774778,155481,1,Kif5c-201,368,Kif5c-201,Kif5c,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,16574,ENSMUSG00000026764,conserved gene and region,2,49619202,49620027,826,*,826,80,0.694915254,0.80995281,0.0968523,1.42E-59,CpGisland,TRUE,U3,Pr-B
4073,cg22320967,-0.0000176,0.00000868,-2.027739403,0.043441918,loss,ns,0.00000939,0.0000148,0.636535456,0.5248972,pos,ns,-0.00288002,0.004321565,-0.666429888,0.505632021,neg,ns,0.296165431,-0.000217734,0.000148618,-1.465057793,0.143918593,neg,ns,0.724293704,Gm47883,Gm47883_Intergenic_upstream,13,26715772,26715821,26715820,26715821,50,-,CAAATTTCATTTTGTTGGGAACTGCCTTTTCAATTATTTCTCTCTTCTCG,Distal Intergenic,13,26680568,26680693,126,2,Gm47883-201,-35128,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14861,cg03062579,-0.00000544,0.00000443,-1.229653496,0.219759316,loss,ns,0.00000478,0.00000752,0.636449403,0.524953196,pos,ns,0.006366272,0.002202514,2.890457084,0.004118345,pos,ns,2.38527729,-0.000126626,0.0000757,-1.671761047,0.095580478,neg,ns,0.906722672,Phf12,Phf12_Exon,11,78023635,78023684,78023635,78023636,50,-,CGAGAACACCAGCACTTTGCAAAGAAAGACTGTCCAATCACAGATAGGAC,"Exon (Phf12-202/Phf12, exon 9 of 11)",11,77982754,78026214,43461,1,Phf12-202,40881,Phf12-202;Phf12-201;Phf12-207;Phf12-206;Phf12-208;Phf12-205;Phf12-203;Phf12-204,Phf12;Phf12;Phf12;Phf12;Phf12;Phf12;Phf12;Phf12,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,14,27,268448,ENSMUSG00000037791,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9822,cg20926981,0.0000191,0.00000481,3.977725801,0.0000867,gain,ns,-0.0000052,0.00000818,-0.636324456,0.525034507,neg,ns,0.001051581,0.00239612,0.438868341,0.661062654,pos,ns,0.179757377,-0.0000087,0.0000824,-0.105540671,0.916015057,neg,ns,0.896362644,Tbc1d5,Tbc1d5_Intron,17,50954569,50954618,50954569,50954570,50,-,CGAGGAGACTGAAAATATAAATACAAGCTGCTATTTTGGTGTGATCACAG,"Intron (Tbc1d5-201/Tbc1d5, intron 8 of 21)",17,50733124,51179168,446045,2,Tbc1d5-201,224550,Tbc1d5-201;Tbc1d5-207;Tbc1d5-205;Tbc1d5-208;Tbc1d5-203;Tbc1d5-202;Tbc1d5-206;Tbc1d5-204,Tbc1d5;Tbc1d5;Tbc1d5;Tbc1d5;Tbc1d5;Tbc1d5;Tbc1d5;Tbc1d5,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,14,72238,ENSMUSG00000023923,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20686,cg01994205,0.0000256,0.00000248,10.32318816,1.14E-21,gain,yes,0.00000268,0.00000421,0.636296996,0.525052378,pos,ns,0.003725088,0.001232638,3.022044135,0.002720056,pos,ns,2.565422156,0.000000971,0.0000424,0.022914639,0.981733106,pos,ns,0.057918971,Pou4f1,Pou4f1_fiveUTR,14,104467691,104467740,104467739,104467740,50,-,GATGCATGGCAAAGTGAGGCTGCTTGCTGTTCATGGACATCATCGTGGCG,Promoter (<=1kb),14,104461676,104467999,6324,2,Pou4f1-201,259,Pou4f1-201;Pou4f1-202,Pou4f1;Pou4f1,0;-2326,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,31,18996,ENSMUSG00000048349,mapped to different genes,14,104467739,104468237,499,*,499,89,0.771543086,1.206296176,0.178356713,5.22E-94,CpGisland,TRUE,U3,Pr-B
26120,cg02438293,-0.0000108,0.00000347,-3.110748544,0.002039681,loss,ns,0.00000375,0.00000589,0.63624506,0.525086178,pos,ns,-0.001833497,0.001726573,-1.06192814,0.289094887,neg,ns,0.53895959,-0.0000299,0.0000594,-0.504145487,0.614517257,neg,ns,0.951465108,Sox5,Sox5_Intron,6,144012429,144012478,144012477,144012478,50,-,ACGTTTTGACTGCTAGTCATTCAATTTTAAAGCATCCTCAATTAGGGGCG,"Intron (Sox5-201/Sox5, intron 6 of 14)",6,143828425,144209480,381056,2,Sox5-201,197002,Sox5-201;Sox5-214;Sox5-205;Sox5-202;Sox5-209;Sox5-207,Sox5;Sox5;Sox5;Sox5;Sox5;Sox5,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,71,20678,ENSMUSG00000041540,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20946,cg17856663,0.0000152,0.00000888,1.71665196,0.087041673,gain,ns,-0.0000096,0.0000151,-0.636198607,0.525116411,neg,ns,0.036848609,0.004421273,8.334388409,2.56E-15,pos,yes,14.59141427,-0.001060976,0.000152047,-6.977940562,1.82E-11,neg,yes,0.858502418,Elp4,Elp4_Intron,2,105787735,105787784,105787735,105787736,50,-,CGTGTAAGCTTGTTTTGTGTGAGAGCTGCTGTGGTTTTAGCAGAGAGATT,"Intron (Elp4-202/Elp4, intron 9 of 9)",2,105701027,105904564,203538,2,Elp4-202,116780,Elp4-202;Elp4-201;Elp4-204,Elp4;Elp4;Elp4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,16,77766,ENSMUSG00000027167,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3688,cg11694514,6.22E-08,0.0000099,0.00628443,0.994989825,gain,ns,0.0000107,0.0000168,0.635788128,0.525383602,pos,ns,0.016242409,0.004928503,3.295607018,0.001095994,pos,ns,2.960191926,-0.000330883,0.000169491,-1.952215931,0.05181253,neg,ns,0.231656048,Nsmf,Nsmf_Exon,2,25054999,25055048,25055047,25055048,50,-,GCAGCCCGAGCGTTTGGAGAGTACCTGTCCCAGAGTCACCCTGAGAACCG,Promoter (<=1kb),2,25054355,25062881,8527,1,Nsmf-203,644,Nsmf-203;Nsmf-216;Nsmf-207;Nsmf-201;Nsmf-214;Nsmf-218;Nsmf-202;Nsmf-204;Nsmf-209;Nsmf-206;Nsmf-213;Nsmf-215;Nsmf-205;Nsmf-211;Nsmf-210;Nsmf-212;Pnpla7-201;Pnpla7-204;Pnpla7-203;Pnpla7-214;Pnpla7-215;Pnpla7-202;Pnpla7-205;Pnpla7-208,Nsmf;Nsmf;Nsmf;Nsmf;Nsmf;Nsmf;Nsmf;Nsmf;Nsmf;Nsmf;Nsmf;Nsmf;Nsmf;Nsmf;Nsmf;Nsmf;Pnpla7;Pnpla7;Pnpla7;Pnpla7;Pnpla7;Pnpla7;Pnpla7;Pnpla7,0;0;0;0;0;0;0;0;0;0;0;0;0;-832;-2099;-2528;78966;78926;15493;3647;3333;3278;3091;1845,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,56876,ENSMUSG00000006476,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U4,Pr-F
21241,cg03445896,-0.00000452,0.00000311,-1.45343057,0.147115803,loss,ns,-0.00000336,0.00000528,-0.635774884,0.525392224,neg,ns,-0.000805204,0.001546753,-0.520576945,0.603033118,neg,ns,0.219658836,-0.0000711,0.0000532,-1.335997068,0.182530145,neg,ns,0.953973397,Lpar4,Lpar4_Exon,X,106930362,106930411,106930410,106930411,50,+,ATCTTGGGTCTGATAACCAACAGTGTCTCTCTGTTTGTCTTCTGTTTCCG,"Exon (Lpar4-201/Lpar4, exon 3 of 3)",20,106920625,106933900,13276,1,Lpar4-201,9737,Lpar4-201,Lpar4,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,78134,ENSMUSG00000049929,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22203,cg20589448,-0.00000123,0.00000457,-0.270248737,0.787148726,loss,ns,0.00000493,0.00000776,0.635642957,0.525478114,pos,ns,-0.000288164,0.002274162,-0.126712017,0.899250481,neg,ns,0.046119321,-0.0000527,0.0000782,-0.6735416,0.501104645,neg,ns,0.899188247,Map3k1,Map3k1_Exon,13,111768050,111768099,111768050,111768051,50,-,CGAGATGGAGCTTTGATCCTTGAGCTACGCCTACTGTGATATTTCTGGAA,"Exon (Map3k1-201/Map3k1, exon 6 of 20)",13,111746428,111808993,62566,2,Map3k1-201,40894,Map3k1-201;Map3k1-203;Map3k1-204,Map3k1;Map3k1;Map3k1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,26401,ENSMUSG00000021754,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1918,cg12509442,-0.00000521,0.00000177,-2.944178242,0.003482928,loss,ns,0.00000191,0.000003,0.635633579,0.52548422,pos,ns,-0.000928663,0.000880074,-1.055209154,0.292151361,neg,ns,0.534392086,-0.0000142,0.0000303,-0.469667821,0.638922554,neg,ns,0.946705853,Vstm2a,Vstm2a_threeUTR,11,16281947,16281996,16281995,16281996,50,-,CTTTCTCTTCTTAAAGCAAAGAGCAAATCGCCTGTAAAATCTACGGAGCG,3' UTR,11,16257724,16284186,26463,1,Vstm2a-201,24223,Vstm2a-201;Vstm2a-202;Vstm2a-205;Vstm2a-204;Vstm2a-203,Vstm2a;Vstm2a;Vstm2a;Vstm2a;Vstm2a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,7,211739,ENSMUSG00000048834,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7251,cg04529572,0.00000655,0.00000194,3.367744423,0.00085344,gain,ns,-0.0000021,0.0000033,-0.635525148,0.525554818,neg,ns,0.0000624,0.000967959,0.064418287,0.948678688,pos,ns,0.022880856,-0.0000132,0.0000333,-0.396163324,0.692257083,neg,ns,0.033473182,Gm8707,Gm8707_Intron,9,41736387,41736436,41736387,41736388,50,+,CGACATTAATGTAACTATGTGCTTGACCTGCTAAGGCAGCTAATTTTTCA,"Intron (Gm35835-202/Gm35835-202, intron 2 of 4)",9,41654303,41655282,980,1,Gm8707-201,82084,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,12,667566,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
306,cg11942221,0.0000121,0.00000423,2.852097936,0.004634907,gain,ns,-0.00000456,0.00000718,-0.635332651,0.525680165,neg,ns,0.003621134,0.002103877,1.721171997,0.086217316,pos,ns,1.0644055,-0.000152853,0.0000724,-2.11262783,0.035431907,neg,ns,0.932643292,Ewsr1,Ewsr1_threeUTR,11,5080545,5080594,5080593,5080594,50,+,ATTTTGTTAAAAATATTCTATGTATATTTTTCCTCTCCATATGGACACCG,3' UTR,11,5069689,5099266,29578,2,Ewsr1-203,18672,Ewsr1-203;Ewsr1-202;Ewsr1-205;Ewsr1-209;Ewsr1-212;Ewsr1-208;Ewsr1-211;Ewsr1-204;Ewsr1-210,Ewsr1;Ewsr1;Ewsr1;Ewsr1;Ewsr1;Ewsr1;Ewsr1;Ewsr1;Ewsr1,0;0;0;0;-2024;0;0;0;5442,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,8,14030,ENSMUSG00000009079,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1513,cg02140913,0.0000335,0.0000169,1.982387813,0.048318491,gain,ns,-0.0000183,0.0000287,-0.635318267,0.525689532,neg,ns,-0.002840129,0.00842086,-0.337272977,0.73613937,neg,ns,0.133039955,-0.000283542,0.000289593,-0.979107187,0.32829049,neg,ns,0.686037948,Gm11819,Gm11819_Intergenic_upstream,4,13399219,13399268,13399267,13399268,50,-,TTTTTACAATGCATTGATGGCTTTATCTGATGCAGCCTTGGCAGGGGCCG,Distal Intergenic,4,13444770,13445141,372,1,Gm11819-201,-45551,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,19,22,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8386,cg02195448,-0.0000173,0.00000479,-3.617263535,0.000347472,loss,ns,0.00000517,0.00000814,0.635282175,0.525713035,pos,ns,0.001462159,0.002384652,0.613154043,0.540224074,pos,ns,0.267426066,0.0000986,0.000082,1.202291688,0.230168091,pos,ns,0.901049069,Zeb2,Zeb2_Intron,2,45083087,45083136,45083135,45083136,50,-,TCTGCTGTTCTCCAACTCTGCTGCAGCAGTGAGCTGCGGATGTTGGAACG,"Intron (Zeb2-212/Zeb2, intron 3 of 10)",2,44983632,45117395,133764,2,Zeb2-212,34259,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20154,cg06322808,-0.000000249,0.000000424,-0.586663512,0.557856681,loss,ns,0.000000458,0.000000721,0.635237438,0.52574217,pos,ns,0.000488591,0.000211187,2.313545258,0.021346638,pos,ns,1.670670512,-0.000014,0.00000726,-1.930055542,0.05451206,neg,ns,0.010325579,Calcoco1,Calcoco1_Intergenic_upstream,15,102746954,102747003,102746954,102746955,50,-,CGTTTTAATTAGGCCTGAACAATAAACAAGCTAAACGAGGCGCGCAGGAC,Distal Intergenic,15,102706777,102722178,15402,2,Calcoco1-201,-24825,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,20,29,67488,ENSMUSG00000023055,mapped to different genes,15,102746702,102747580,879,*,879,80,0.664391354,0.834757835,0.091012514,2.83E-57,CpGisland,TRUE,U3,Pr-B
24773,cg25694058,-0.00000396,0.00000691,-0.573279168,0.566871308,loss,ns,-0.00000746,0.0000117,-0.635199801,0.52576668,neg,ns,-0.005189349,0.003438401,-1.509233035,0.132257757,neg,ns,0.878578847,0.000235332,0.000118246,1.990187055,0.047448358,pos,ns,0.916688695,Dars,Dars_Exon,1,128405362,128405411,128405410,128405411,50,-,TTACTTGGCAGCAAATTTAACCATCTGCTTGCTTGCATGGTCTCCCACCG,"Exon (Dars-201/Dars, exon 4 of 16)",1,128363707,128417359,53653,2,Dars-201,11948,Dars-201,Dars,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,226414,ENSMUSG00000026356,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24092,cg26141618,0.0000293,0.00000259,11.3206167,4.25E-25,gain,yes,-0.0000028,0.0000044,-0.635063709,0.525855315,neg,ns,0.001970871,0.001289951,1.527864406,0.127565872,pos,ns,0.894265498,0.0000776,0.0000444,1.749315532,0.081226088,pos,ns,0.071132396,Zic5,Zic5_fiveUTR,14,122465460,122465509,122465508,122465509,50,-,TCCAGCGATTGGCAGAGTGAACACCACATTTGAGCTGCACAGTGGGACCG,Promoter (<=1kb),14,122456795,122465677,8883,2,Zic5-201,168,Zic5-201,Zic5,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,26,65100,ENSMUSG00000041703,conserved gene and region,14,122465508,122465682,175,*,175,12,0.64,0.669642857,0.068571429,0.000000139,CpGisland,TRUE,U3,Pr-B
16766,cg14235386,-0.00000331,0.00000188,-1.754550196,0.080324237,loss,ns,-0.00000203,0.0000032,-0.635049017,0.525864884,neg,ns,-0.00133332,0.000937706,-1.421895535,0.156061882,neg,ns,0.806703159,0.0000175,0.0000322,0.543934293,0.586877667,pos,ns,0.93182354,Esrrb,Esrrb_Exon,12,86488603,86488652,86488603,86488604,50,+,CGCAAGTCCTGCCAGGCCTGCCGCTTCATGAAATGCCTCAAAGTGGGGAT,"Exon (Esrrb-204/Esrrb, exon 3 of 7)",12,86361117,86521628,160512,1,Esrrb-204,127486,Esrrb-204;Esrrb-202;Esrrb-203;Esrrb-201;Esrrb-206,Esrrb;Esrrb;Esrrb;Esrrb;Esrrb,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,19,26380,ENSMUSG00000021255,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10723,cg03950161,-0.0000275,0.00000868,-3.172878078,0.00166069,loss,ns,0.00000937,0.0000147,0.634983863,0.52590732,pos,ns,-0.005696171,0.004320903,-1.318282394,0.188382331,neg,ns,0.724959834,0.000101194,0.000148596,0.681001054,0.496379183,pos,ns,0.610378987,Zfp462,Zfp462_Exon,4,55013772,55013821,55013772,55013773,50,+,CGTCAGGAGAGGAGGAAACAGCTTTTGAGCAAGCAGAAATATGCAGATGG,"Exon (Zfp462-203/Zfp462, exon 3 of 13)",4,54947976,55083563,135588,1,Zfp462-203,65796,Zfp462-203;Zfp462-201;Zfp462-202,Zfp462;Zfp462;Zfp462,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,23,242466,ENSMUSG00000060206,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23761,cg14427821,0.000000308,0.000000519,0.593842634,0.553050443,gain,ns,0.00000056,0.000000882,0.634942864,0.525934025,pos,ns,0.000669826,0.000258501,2.591197829,0.010016609,pos,ns,1.99927929,-0.0000142,0.00000889,-1.5967541,0.111339366,neg,ns,0.011051228,Foxo6,Foxo6_Intron,4,120282898,120282947,120282946,120282947,50,+,CAGGTGGTCGTGGGAGTCTGCCGGGCGTGCCAGCAACTGTGCCAGGAGCG,"Intron (Foxo6-201/Foxo6, intron 1 of 1)",4,120267079,120287349,20271,2,Foxo6-201,4402,Foxo6-201,Foxo6,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,14,42,329934,ENSMUSG00000052135,conserved gene and region,4,120282454,120283157,704,*,704,60,0.700284091,0.697259822,0.085227273,2.40E-41,CpGisland,TRUE,U3,Pr-B
16614,cg22902874,-0.00000402,0.00000226,-1.777725466,0.076429205,loss,ns,-0.00000244,0.00000384,-0.63488159,0.525973937,neg,ns,0.00200514,0.001124651,1.782900202,0.075580975,pos,ns,1.12158751,-0.0000604,0.0000387,-1.560727676,0.11960828,neg,ns,0.946965065,Btbd11,Btbd11_Exon,10,85629250,85629299,85629250,85629251,50,-,CGAGACCCGCCATTGGACGGCTCTGACTTTTGCTGTGTTGCATGGACATA,"Exon (Btbd11-203/Btbd11, exon 7 of 17)",10,85386814,85660292,273479,1,Btbd11-203,242436,Btbd11-203;Btbd11-201;Btbd11-202;Btbd11-206,Btbd11;Btbd11;Btbd11;Btbd11,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,13,13,74007,ENSMUSG00000020042,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19255,cg08122757,-0.00000275,0.00000129,-2.133415183,0.03367561,loss,ns,-0.00000139,0.00000219,-0.634877313,0.525976723,neg,ns,0.000437242,0.000641113,0.682004108,0.495745589,pos,ns,0.304741141,-0.0000319,0.000022,-1.448877535,0.148382545,neg,ns,0.974484791,Tnpo1,Tnpo1_Exon,13,98850145,98850194,98850193,98850194,50,+,CTTGAGGACAAACGTAACCAAGACGACCAATTGTTATTGCTAAGGTAACG,"Exon (Tnpo1-201/Tnpo1, exon 20 of 24)",13,98839019,98891040,52022,2,Tnpo1-201,40846,Tnpo1-201;Tnpo1-202;Tnpo1-206;Tnpo1-204,Tnpo1;Tnpo1;Tnpo1;Tnpo1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,9,238799,ENSMUSG00000009470,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4537,cg00643485,-0.0000552,0.00000961,-5.749460765,2.14E-08,loss,yes,-0.0000104,0.0000163,-0.634876356,0.525977347,neg,ns,-0.015152114,0.004782494,-3.168245177,0.00168653,neg,ns,2.77300585,0.0000781,0.00016447,0.474767856,0.635286734,pos,ns,0.923223495,Ccdc88a,Ccdc88a_Exon,11,29497334,29497383,29497382,29497383,50,+,ACATTAAAGTGGTTGCACTGAAAAGACTGCCCTTTTTGAGGAACAGACCG,"Exon (Ccdc88a-208/Ccdc88a, exon 26 of 31)",11,29373658,29510808,137151,1,Ccdc88a-201,123676,Ccdc88a-201;Ccdc88a-208;Ccdc88a-203;Ccdc88a-205;Ccdc88a-206,Ccdc88a;Ccdc88a;Ccdc88a;Ccdc88a;Ccdc88a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,6,108686,ENSMUSG00000032740,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3987,cg10136700,-0.0000163,0.00000727,-2.239439018,0.025836225,loss,ns,-0.00000784,0.0000124,-0.634823916,0.526011506,neg,ns,-0.002483466,0.003619725,-0.686092499,0.493167587,neg,ns,0.307005475,-0.000111861,0.000124482,-0.898614974,0.369555209,neg,ns,0.814243488,Gm50479,Gm50479_Intergenic_upstream,8,26205893,26205942,26205893,26205894,50,-,CGATGATTTGGATTGCTCTGGGCATTAATATTATTAAAACCTGTCACAAG,Distal Intergenic,8,26237222,26237407,186,1,Gm50479-201,-31329,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,21,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2670,cg15436910,-0.0000158,0.0000138,-1.150781335,0.250709076,loss,ns,-0.0000148,0.0000234,-0.634803298,0.526024937,neg,ns,-0.003669946,0.006851781,-0.535619365,0.592605698,neg,ns,0.227234177,0.0000745,0.000235632,0.316217636,0.752050132,pos,ns,0.754413247,Ephb3,Ephb3_Intron,16,21208162,21208211,21208210,21208211,50,+,GTTTGAAAATTGTAGCCCTGCCTGTTGTGCTGAGTCAAACTGGTTTGTCG,"Intron (Ephb3-201/Ephb3, intron 1 of 15)",16,21204755,21223304,18550,1,Ephb3-201,3407,Ephb3-201;Ephb3-206;Ephb3-204;Ephb3-205,Ephb3;Ephb3;Ephb3;Ephb3,0;-2313;0;-4206,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,2,13845,ENSMUSG00000005958,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
6214,cg12851244,-0.00000524,0.00000193,-2.715103485,0.006996826,loss,ns,0.00000208,0.00000328,0.634745832,0.526062372,pos,ns,0.000910372,0.000960521,0.947789711,0.343974754,pos,ns,0.463473431,-0.0000142,0.000033,-0.429328846,0.667982156,neg,ns,0.058451729,Pcgf5,Pcgf5_Exon,19,36348209,36348258,36348209,36348210,50,-,CGAGAGGCTGTGCCCCAGTTTGTGTCCAATCAGGGAGTGCGGGCTGTGCC,Promoter (<=1kb),19,36348309,36460970,112662,1,Pcgf5-211,-100,Pcgf5-211;Pcgf5-205,Pcgf5;Pcgf5,0;-279,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,76073,ENSMUSG00000024805,conserved gene but different region,19,36348072,36349309,1238,*,1238,161,0.739095315,0.954588123,0.130048465,2.72E-142,CpGisland,TRUE,U2,Pr-W
25917,cg19171923,-0.0000563,0.0000121,-4.644648544,0.00000504,loss,ns,0.0000131,0.0000206,0.634650498,0.526124478,pos,ns,0.032341316,0.006033892,5.359942738,0.000000163,pos,ns,6.788286161,-0.000510617,0.000207505,-2.460743588,0.014409813,neg,ns,0.482827628,Mid2,Mid2_Exon,X,140736479,140736528,140736479,140736480,50,-,CGAGTTGGTAGAGATCATCCAGCAGAGGAAGCAAATGATCGCTGTCAAAA,"Exon (Mid2-202/Mid2, exon 4 of 10)",20,140664956,140767715,102760,1,Mid2-202,71523,Mid2-202;Mid2-201;Mid2-203,Mid2;Mid2;Mid2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,11,23947,ENSMUSG00000000266,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12352,cg26375824,-0.0000133,0.00000242,-5.490611396,8.35E-08,loss,yes,0.00000261,0.00000411,0.634225826,0.526401181,pos,ns,-0.002306523,0.001203709,-1.916179664,0.056261681,neg,ns,1.249787299,0.00000861,0.0000414,0.207984501,0.835377642,pos,ns,0.958242578,Tnc,Tnc_Exon,4,63984649,63984698,63984697,63984698,50,-,CATTCTCCGATGCCATCCAGGAAACTGTGAACCCGTAGGGATTAATGTCG,"Exon (Tnc-203/Tnc, exon 14 of 26)",4,63959785,64020725,60941,2,Tnc-201,36027,Tnc-201;Tnc-203;Tnc-204,Tnc;Tnc;Tnc,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,21923,ENSMUSG00000028364,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9113,cg02073955,-0.0000148,0.00000565,-2.619529666,0.009238268,loss,ns,-0.00000608,0.00000959,-0.634208565,0.52641243,neg,ns,0.00420785,0.002810251,1.497321824,0.135327012,pos,ns,0.868615506,-0.0000584,0.0000966,-0.604320026,0.546072912,neg,ns,0.897766314,Gm4791,Gm4791_Intergenic_upstream,9,46900000,46900049,46900048,46900049,50,-,CACTTCTGAGCAGGGTGCAGAACAGTAAACTATAATTTAAACAAGAATCG,Distal Intergenic,9,46998741,47003860,5120,1,Gm4791-201,-98741,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,9,18,215467,ENSMUSG00000094893,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26102,cg18819444,-0.00002,0.00000682,-2.928829336,0.003654654,loss,ns,0.00000735,0.0000116,0.63419452,0.526421582,pos,ns,-0.008020426,0.003393215,-2.363665475,0.018711744,neg,ns,1.727885743,0.0000434,0.000116692,0.371743266,0.710337973,pos,ns,0.851485113,Gm2505,Gm2505_Intron,3,143914564,143914613,143914564,143914565,50,+,CGTAATCAGCCTTCGGTCATGTAGAACAATGCATAAAATTAAATTGACAT,"Intron (Gm42707-202/Gm42707-202, intron 1 of 1)",3,143872995,143873819,825,1,Gm2505-201,41569,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,37,100039938,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8076,cg15944967,0.000033,0.00000368,8.977411422,2.74E-17,gain,yes,-0.00000396,0.00000625,-0.634161673,0.526442988,neg,ns,0.007816056,0.0018307,4.269435915,0.0000261,pos,ns,4.583648313,-0.00010347,0.000063,-1.643492131,0.101294943,neg,ns,0.076858996,Pax2,Pax2_Intergenic_upstream,19,44724218,44724267,44724266,44724267,50,-,AGCAATCAGCGAGCAGCGGCGAATGGCACATTACAGATGTTTTACTGTCG,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-31827,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,19,44723992,44724314,323,*,323,27,0.616099071,0.905795596,0.083591331,1.06E-18,CpGisland,TRUE,U13,Hc-P
13618,cg06132741,0.0000776,0.00000794,9.779968976,7.30E-20,gain,yes,0.00000855,0.0000135,0.634041054,0.526521596,pos,ns,0.01478339,0.003950949,3.741731812,0.00021772,pos,ns,3.662102362,0.0000797,0.000135873,0.586924011,0.557681927,pos,ns,0.120107338,Dlx1,Dlx1_Intron,2,71536158,71536207,71536206,71536207,50,-,ATTCTAATGCAGTTTCCCCATCTCTCTGGTAATTATGAGCAATTTTTTCG,"Intron (Dlx1as-204/Dlx1as-204, intron 1 of 1)",2,71530780,71532689,1910,1,Dlx1-206,5427,Dlx1-201;Dlx1-204;Dlx1-203;Dlx1-206,Dlx1;Dlx1;Dlx1;Dlx1,0;0;0;5378,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,36,13390,ENSMUSG00000041911,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
10685,cg01398352,0.0000303,0.0000107,2.840485481,0.004802529,gain,ns,-0.0000115,0.0000181,-0.633916208,0.526602966,neg,ns,0.007643158,0.005302669,1.44137934,0.150486909,pos,ns,0.822501278,-0.000177773,0.000182358,-0.97485351,0.330393011,neg,ns,0.355288339,Zfp462,Zfp462_Intron,4,54966268,54966317,54966268,54966269,50,-,CGCAGGAGATAATTCAGCTGGGCAAGCAGCAGCATGGGGGTGGATCTACA,"Intron (Zfp462-204/Zfp462, intron 1 of 2)",4,54945048,55008314,63267,1,Zfp462-204,21220,Zfp462-204;Zfp462-203,Zfp462;Zfp462,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,23,242466,ENSMUSG00000060206,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7564,cg24713486,0.00000632,0.00000309,2.046888869,0.041511917,gain,ns,0.00000333,0.00000525,0.633894436,0.526617157,pos,ns,0.006565051,0.001537144,4.270941639,0.0000259,pos,ns,4.58641682,-0.000237398,0.0000529,-4.490874987,0.00001,neg,ns,0.940483485,Cpeb2,Cpeb2_Exon,5,43238347,43238396,43238395,43238396,50,+,GCCAGCTTGGGGCTCAGATTCACTCCAAGATAGTTGGTGCACTGCAGCCG,"Exon (Cpeb2-204/Cpeb2, exon 3 of 12)",5,43233170,43289723,56554,1,Cpeb2-204,5177,Cpeb2-204;Cpeb2-201;Cpeb2-205;Cpeb2-206;Cpeb2-202;Cpeb2-207;Cpeb2-203,Cpeb2;Cpeb2;Cpeb2;Cpeb2;Cpeb2;Cpeb2;Cpeb2,0;0;0;0;0;3297;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,11,231207,ENSMUSG00000039782,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21345,cg07615822,-0.00000229,0.0000069,-0.33131956,0.740626975,loss,ns,-0.00000743,0.0000117,-0.633853436,0.526643881,neg,ns,-0.00428715,0.003434649,-1.248206123,0.212897501,neg,ns,0.671829436,0.0000942,0.000118117,0.797268981,0.425905055,pos,ns,0.876788499,Cacna2d2,Cacna2d2_Exon,9,107443909,107443958,107443957,107443958,50,+,ATTTTCTAATTATTCCTTGTCTTGCATAACCGTGCATCGCCAAAGTGTCG,"Exon (Gm17118-201/Gm17118-201, exon 2 of 2)",9,107399612,107529343,129732,1,Cacna2d2-201,44297,Cacna2d2-201;Cacna2d2-205;Cacna2d2-202;Cacna2d2-203;Cacna2d2-204;Cacna2d2-208,Cacna2d2;Cacna2d2;Cacna2d2;Cacna2d2;Cacna2d2;Cacna2d2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,18,56808,ENSMUSG00000010066,conserved gene but different region,9,107443957,107444251,295,*,295,19,0.528813559,0.926752646,0.06440678,3.05E-11,CpGisland,TRUE,U11,Tr-P
26168,cg22432362,0.0000142,0.00000516,2.754134406,0.006232263,gain,ns,0.00000556,0.00000877,0.633742306,0.526716319,pos,ns,-0.005658111,0.002570652,-2.201041112,0.028469983,neg,ns,1.545612796,0.000477962,0.0000884,5.406533842,0.000000128,pos,yes,0.081062861,Lmo4,Lmo4_Promoter,3,144204274,144204323,144204322,144204323,50,-,CAAAAATGGATGCTTAATTCATGTCTTGATTTTAATTAGGTGATTCACCG,Promoter (<=1kb),3,144188530,144205220,16691,2,Lmo4-201,897,Lmo4-203;Lmo4-201;Lmo4-202;Lmo4-207;Lmo4-208;Lmo4-205;Lmo4-204,Lmo4;Lmo4;Lmo4;Lmo4;Lmo4;Lmo4;Lmo4,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,5,54,16911,ENSMUSG00000028266,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
7039,cg00436746,0.000054,0.00000746,7.234822896,3.68E-12,gain,yes,0.00000803,0.0000127,0.633673037,0.526761473,pos,ns,0.014539536,0.00371293,3.915919458,0.000110797,pos,ns,3.955472507,-0.000286221,0.000127687,-2.241574547,0.025696173,neg,ns,0.097385756,Tfap2a,Tfap2a_Intergenic_downstream,13,40714194,40714243,40714242,40714243,50,+,TACATCTACGTTACAGTTAACCAGTCTCTCTAGGAAATAATAAATAACCG,Downstream (1-2kb),13,40716724,40728944,12221,2,Tfap2a-209,14701,Tfap2a-201;Tfap2a-202;Tfap2a-205;Tfap2a-203;Tfap2a-209;Tfap2a-208;Tfap2a-206,Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a,0;0;0;0;0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,15,57,21418,ENSMUSG00000021359,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
8185,cg04943368,0.0000272,0.00000312,8.734563728,1.56E-16,gain,yes,-0.00000335,0.00000529,-0.633661914,0.526768725,neg,ns,0.001981381,0.001550441,1.277946665,0.202224327,pos,ns,0.694166602,0.0000516,0.0000533,0.967157555,0.334219195,pos,ns,0.140356784,Pax2,Pax2_Exon,19,44835925,44835974,44835973,44835974,50,-,CATTCTTCTCCTGTGTTAACTTCCAGGTTCCCCTTATTATTATAGTGCCG,"Exon (Pax2-203/Pax2, exon 10 of 10)",19,44756045,44837851,81807,1,Pax2-203,79880,Pax2-203;Pax2-201,Pax2;Pax2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,16,166,18504,ENSMUSG00000004231,conserved gene but different region,19,44835973,44836413,441,*,441,44,0.725623583,0.798387097,0.099773243,1.19E-33,CpGisland,TRUE,NA,NRS
5314,cg01753854,0.0000596,0.00000828,7.2022205,4.52E-12,gain,yes,-0.00000891,0.0000141,-0.633593179,0.526813533,neg,ns,0.011055494,0.004121783,2.682211434,0.00770578,pos,ns,2.1131834,-0.000271051,0.000141748,-1.912204504,0.056771484,neg,ns,0.115835147,Nkx1-1,Nkx1-1_Exon,5,33431024,33431073,33431072,33431073,50,+,TCTTCCACTTGGTTCGGCGGTTCTGGAACCAGATCTTCACCTGCGTCTCG,"Exon (Nkx1-1-201/Nkx1-1, exon 2 of 2)",5,33430734,33433976,3243,2,Nkx1-1-201,2903,Nkx1-1-201,Nkx1-1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,13,672284,ENSMUSG00000029112,conserved gene and region,5,33430554,33431655,1102,*,1102,126,0.703266788,0.92568,0.114337568,2.08E-103,CpGisland,TRUE,NA,NRS
13465,cg13886393,-0.0000847,0.0000144,-5.895146451,9.77E-09,loss,yes,0.0000155,0.0000244,0.633511984,0.526866467,pos,ns,-0.012045333,0.007149991,-1.684664126,0.093059825,neg,ns,1.03123777,0.000277717,0.000245888,1.129445143,0.259583295,pos,ns,0.88964063,Gm7656,Gm7656_Intergenic_downstream,7,70669089,70669138,70669137,70669138,50,-,TCTTTAAAACAAACTATAAATCCCCTCCTTGTTTCATGTGATTGATGCCG,Distal Intergenic,7,70490848,70491851,1004,1,Gm7656-201,178290,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,4,665486,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3480,cg07437635,0.0000108,0.00000512,2.102063378,0.036354195,gain,ns,0.00000551,0.0000087,0.63322479,0.52705372,pos,ns,0.000950933,0.002549367,0.373007542,0.709397749,pos,ns,0.149110194,-0.000134441,0.0000877,-1.53344036,0.126187285,neg,ns,0.728451211,Bcl11a,Bcl11a_Exon,11,24163680,24163729,24163728,24163729,50,-,GGTTACTGCAACCATTCCAGCCAGGTAGCAAGCCGCCCTTCCTGGCGACG,"Exon (Bcl11a-201/Bcl11a, exon 4 of 5)",11,24078056,24173194,95139,1,Bcl11a-201,85624,Bcl11a-201;Bcl11a-203;Bcl11a-202;Bcl11a-204;Bcl11a-206,Bcl11a;Bcl11a;Bcl11a;Bcl11a;Bcl11a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,51,98,14025,ENSMUSG00000000861,conserved gene and region,11,24163725,24163848,124,*,124,9,0.612903226,0.894230769,0.072580645,0.00000547,CpGisland,TRUE,U10,Tr-S
363,cg19538069,-0.00000795,0.00000362,-2.194265718,0.028958078,loss,ns,0.0000039,0.00000616,0.632690263,0.527402329,pos,ns,-0.000256935,0.001804124,-0.142415575,0.886844276,neg,ns,0.052152633,0.000013,0.000062,0.209797921,0.833963207,pos,ns,0.949778444,Zfhx4,Zfhx4_Exon,3,5242346,5242395,5242394,5242395,50,-,CCAAATACCTCAGCATTAGCAGGAGTTGGTCCTGTGTTGCACAGTTTCCG,"Exon (Zfhx4-203/Zfhx4, exon 2 of 11)",3,5218526,5413165,194640,1,Zfhx4-203,23820,Zfhx4-203;Zfhx4-202;Zfhx4-201;Zfhx4-204;Zfhx4-205,Zfhx4;Zfhx4;Zfhx4;Zfhx4;Zfhx4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,23,77,80892,ENSMUSG00000025255,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24303,cg22835911,0.00000376,0.00000197,1.907575769,0.057369969,gain,ns,0.00000212,0.00000335,0.632368301,0.527612364,pos,ns,0.00155836,0.000981552,1.587648434,0.113385259,pos,ns,0.945443403,-0.0000129,0.0000338,-0.380774022,0.703631736,neg,ns,0.034122032,Pou3f1,Pou3f1_Intron,4,124575467,124575516,124575467,124575468,50,-,CGAGTTTATGGATCTTGATTGCACCCAGCAGGGAATCCTTTTTAGTGATG,"Intron (Gm2164-201/Gm2164-201, intron 1 of 1)",4,124656807,124660655,3849,1,Pou3f1-201,-81340,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,43,85,18991,ENSMUSG00000090125,mapped to different genes,4,124575150,124575468,319,*,319,28,0.648902821,0.833831217,0.087774295,5.62E-20,CpGisland,TRUE,NA,NRS
12680,cg16008721,0.00000505,0.00000171,2.958656758,0.003327735,gain,ns,-0.00000183,0.0000029,-0.632214963,0.527712411,neg,ns,0.001814484,0.000849445,2.136081805,0.033455818,pos,ns,1.475528351,-0.0000346,0.0000292,-1.184520063,0.237114613,neg,ns,0.957432537,Phf20l1,Phf20l1_Exon,15,66597394,66597443,66597394,66597395,50,+,CGTTGTTTAAAAAGAATGCACATTAAAGCCATGCCCGAGGATGCTAAGGG,"Exon (Phf20l1-209/Phf20l1, exon 5 of 9)",15,66577560,66611616,34057,1,Phf20l1-209,19834,Phf20l1-209;Phf20l1-210;Phf20l1-205;Phf20l1-201;Phf20l1-211;Phf20l1-203;Phf20l1-206,Phf20l1;Phf20l1;Phf20l1;Phf20l1;Phf20l1;Phf20l1;Phf20l1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,239510,ENSMUSG00000072501,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22410,cg15053082,0.000163187,0.0000126,12.96126846,5.38E-31,gain,yes,-0.0000135,0.0000214,-0.632208905,0.527716363,neg,ns,-0.008296123,0.006266349,-1.323916473,0.186506175,neg,ns,0.729306786,0.000114641,0.000215499,0.531980816,0.595120317,pos,ns,0.522362665,Dph6,Dph6_Intergenic_downstream,2,114407418,114407467,114407418,114407419,50,-,CGTTCACCTGTGTTGAACATTAAGGGGGTAAATTTTCAGTCCAGGGATTT,Distal Intergenic,2,114518145,114545891,27747,2,Dph6-204,138473,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,10,66632,ENSMUSG00000057147,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22928,cg25466955,0.0000369,0.00000422,8.752018395,1.37E-16,gain,yes,-0.00000453,0.00000716,-0.632059817,0.527813647,neg,ns,0.003749139,0.00209787,1.78711685,0.074895515,pos,ns,1.12554419,-0.0000759,0.0000721,-1.0525641,0.293360561,neg,ns,0.051715474,Isl1,Isl1_Intergenic_downstream,13,116294069,116294118,116294069,116294070,50,-,CGAGCCACCAGCTCTGTCTAGACTCGCGACCTCACAAGTCAAGCGCCTTG,Distal Intergenic,13,116299395,116303351,3957,2,Isl1-203,9282,Isl1-201,Isl1,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,14,16392,ENSMUSG00000042258,conserved gene and region,13,116293973,116294113,141,*,141,15,0.687943262,0.9,0.106382979,3.57E-12,CpGisland,TRUE,U13,Hc-P
12013,cg15050504,-0.00000364,0.00000257,-1.412392852,0.158837411,loss,ns,-0.00000276,0.00000437,-0.632049437,0.52782042,neg,ns,-0.001264462,0.001281068,-0.987037422,0.324394046,neg,ns,0.488927126,-0.000110704,0.0000441,-2.512813099,0.01248452,neg,ns,0.020636483,Anp32a,Anp32a_fiveUTR,9,62341418,62341467,62341466,62341467,50,+,TAAAACGCGCGGCCGTGGGTTCGGGGTTTATTGATTGAATTCCGCCGGCG,Promoter (<=1kb),9,62341293,62377701,36409,1,Anp32a-207,125,Anp32a-207;Anp32a-201;Anp32a-203;Anp32a-205;Anp32a-210;Anp32a-208;Anp32a-202,Anp32a;Anp32a;Anp32a;Anp32a;Anp32a;Anp32a;Anp32a,0;0;0;0;-997;-2596;-3332,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,9,11737,ENSMUSG00000032249,mapped to different genes,9,62340767,62341614,848,*,848,72,0.632075472,0.85274934,0.08490566,2.37E-49,CpGisland,TRUE,U1,Pr-A
3419,cg03158654,0.0000234,0.00000516,4.541909417,0.00000799,gain,ns,-0.00000554,0.00000876,-0.631904214,0.527915191,neg,ns,-0.000380627,0.002566237,-0.148321123,0.882185777,neg,ns,0.054439948,0.0000105,0.0000883,0.118429144,0.905804336,pos,ns,0.084191268,A830031A19Rik,A830031A19Rik_Promoter,11,24074228,24074277,24074228,24074229,50,-,CGGTGGGTTTCTAACCGACGTGAATATATGTGCATTATTTCAGAAAGTCT,Promoter (<=1kb),11,24048955,24075054,26100,2,A830031A19Rik-201,777,A830031A19Rik-201;Bcl11a-201;Bcl11a-203;Bcl11a-205;Bcl11a-202,A830031A19Rik;Bcl11a;Bcl11a;Bcl11a;Bcl11a,0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,9,23,268391,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
15664,cg04049246,-0.000018,0.0000153,-1.175767754,0.240589874,loss,ns,-0.0000164,0.000026,-0.631857147,0.527945908,neg,ns,-0.010875759,0.007622542,-1.426789064,0.154647087,neg,ns,0.810658256,0.0000842,0.000262139,0.321068669,0.748374699,pos,ns,0.745779914,Gm11421,Gm11421_Intergenic_upstream,11,82647705,82647754,82647753,82647754,50,+,GCTGGGGATAATTCACAGTAAAATATGACTTTCCATTTATCACACTGACG,Distal Intergenic,11,82725143,82725436,294,1,Gm11421-201,-77389,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4219,cg19554246,0.0000402,0.0000123,3.277524757,0.00116612,gain,ns,-0.0000132,0.0000208,-0.631644312,0.528084821,neg,ns,0.024948841,0.006107355,4.085048649,0.0000562,pos,ns,4.250561644,-0.000738375,0.000210031,-3.51554357,0.000504334,neg,ns,0.253695795,Rxra,Rxra_Intron,2,27681885,27681934,27681885,27681886,50,+,CGAGATGTTCTGAGCAGTTGTGCCCCAGCGCCTCACAGACAGGGAAATTG,"Intron (Rxra-204/Rxra, intron 1 of 3)",2,27676440,27741898,65459,1,Rxra-204,5445,Rxra-204;Rxra-201;Rxra-206,Rxra;Rxra;Rxra,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,6,20181,ENSMUSG00000015846,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25098,cg09237107,-0.0000021,0.000000826,-2.537316338,0.01166043,loss,ns,-0.000000886,0.0000014,-0.631506798,0.528174584,neg,ns,0.000263823,0.000411184,0.641617773,0.521595507,pos,ns,0.282666159,-0.0000336,0.0000141,-2.376863555,0.018067321,neg,ns,0.01653188,Fam76a,Fam76a_Exon,4,132922341,132922390,132922341,132922342,50,+,CGCCCCAGCCCGCGCACCTTGCACAGCTGCTGCCCCTGAGACAGCGCCTC,Promoter (<=1kb),4,132899213,132922558,23346,2,Fam76a-201,168,Fam76a-201;Fam76a-202;Fam76a-203,Fam76a;Fam76a;Fam76a,0;0;-1432,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,230789,ENSMUSG00000028878,conserved gene but different region,4,132921963,132922982,1020,*,1020,113,0.687254902,0.938263163,0.110784314,4.49E-91,CpGisland,TRUE,U1,Pr-A
6998,cg05284821,-0.0001832,0.0000152,-12.07089492,9.24E-28,loss,yes,0.0000163,0.0000258,0.631448608,0.52821257,pos,ns,-0.021118917,0.007553765,-2.795813502,0.005499986,neg,ns,2.259638409,0.0000133,0.000259773,0.051054515,0.959314961,pos,ns,0.647100576,Gm7382,Gm7382_Intergenic_upstream,15,40475921,40475970,40475969,40475970,50,+,GCCTGTGCATAATTTCACTTCTATCTATATTTATTTTACAGTGAGCAGCG,Distal Intergenic,15,40537321,40538425,1105,1,Gm7382-201,-61351,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,22,664872,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3690,cg12453993,0.0000955,0.0000115,8.269645858,4.00E-15,gain,yes,-0.0000124,0.0000196,-0.631374678,0.528260833,neg,ns,0.015441293,0.005748094,2.686332505,0.007613543,pos,ns,2.118413187,-0.000435434,0.000197676,-2.202762961,0.028347083,neg,ns,0.167792016,Gm12067,Gm12067_Intergenic_upstream,11,25057228,25057277,25057228,25057229,50,-,CGTCTGGAAGTGTTTATTTTCTGAACATAAATTCAGGGGACAGATTCAAG,Distal Intergenic,11,24552438,24553962,1525,2,Gm12067-201,-503315,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,26,58,100417843,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25066,cg10141261,-0.0000194,0.00000792,-2.443710271,0.015094432,loss,ns,0.00000849,0.0000135,0.63130184,0.528308386,pos,ns,-0.008543202,0.003942071,-2.167185966,0.030981844,neg,ns,1.508892736,-0.0000745,0.000135568,-0.549777479,0.582867866,neg,ns,0.746588558,Chst15,Chst15_Exon,7,132270376,132270425,132270376,132270377,50,+,CGAGAACAGCAAGCAAGTTCATCTGCTTACTGTCCACACGAAACAGAATT,"Exon (Chst15-201/Chst15, exon 2 of 8)",7,132235780,132316714,80935,2,Chst15-201,46289,Chst15-201;Chst15-202;Chst15-203;Fgfr2-217,Chst15;Chst15;Chst15;Fgfr2,0;0;8200;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,77590,ENSMUSG00000030930,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5992,cg02043564,-0.0000119,0.00000439,-2.709871932,0.007105498,loss,ns,-0.00000471,0.00000746,-0.631251628,0.528341168,neg,ns,-0.006640291,0.002184563,-3.039642279,0.002570424,neg,ns,2.589995284,0.000107818,0.0000751,1.435149286,0.152252697,pos,ns,0.801537595,Dab2ip,Dab2ip_threeUTR,2,35729092,35729141,35729140,35729141,50,-,ATTTTTTTTCCTTTCACAGTATGCATTAGAAACAAAAGCCCGCTTGCTCG,3' UTR,2,35558266,35730994,172729,1,Dab2ip-205,170826,Dab2ip-205;Dab2ip-206;Dab2ip-209;Dab2ip-211;Dab2ip-202;Dab2ip-207;Dab2ip-203;Dab2ip-201;Dab2ip-208;Dab2ip-204;Dab2ip-213,Dab2ip;Dab2ip;Dab2ip;Dab2ip;Dab2ip;Dab2ip;Dab2ip;Dab2ip;Dab2ip;Dab2ip;Dab2ip,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,TRUE,FALSE,threeUTR,9,12,69601,ENSMUSG00000026883,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
1461,cg18450367,-0.00000497,0.00000425,-1.169634557,0.243046558,loss,ns,0.00000456,0.00000723,0.631173151,0.528392406,pos,ns,-0.001862483,0.002116983,-0.879782083,0.379658858,neg,ns,0.420606462,-0.0000609,0.0000728,-0.836692214,0.403410101,neg,ns,0.872015168,Rpl21-ps2,Rpl21-ps2_Intergenic_downstream,12,13086168,13086217,13086216,13086217,50,-,AAAGGCACATCTGTTGGGAGGCCATTTCCAGCCGTGGCTCCAAGCAGCCG,Distal Intergenic,12,13149680,13150160,481,2,Rpl21-ps2-201,63992,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,4,628449,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16778,cg26614925,-0.000000432,0.00000137,-0.315086028,0.752908323,loss,ns,0.00000147,0.00000233,0.631165441,0.52839744,pos,ns,-0.000409725,0.000681828,-0.600920495,0.548332053,neg,ns,0.260956366,0.00000872,0.0000234,0.372010813,0.710138965,pos,ns,0.037081581,Pcbp1,Pcbp1_Exon,6,86525172,86525221,86525220,86525221,50,+,AAAGTGAGACTGTTGTCTTGCCACCTGGTTCAGCTTGGCCAGATCGAGCG,"Exon (Pcbp1-201/Pcbp1, exon 1 of 1)",6,86524492,86526321,1830,2,Pcbp1-201,1100,Pcbp1-201,Pcbp1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,14,15,23983,ENSMUSG00000051695,mapped to different genes,6,86525220,86525644,425,*,425,38,0.665882353,0.811965812,0.089411765,3.12E-27,CpGisland,TRUE,U1,Pr-A
26307,cg11405276,0.0000908,0.0000158,5.72769273,2.41E-08,gain,yes,-0.000017,0.0000269,-0.631148005,0.528408824,neg,ns,0.033700857,0.00788852,4.272139506,0.0000258,pos,ns,4.588619842,-0.000980247,0.000271286,-3.613338908,0.000352558,neg,ns,0.257680261,Ralgapa2,Ralgapa2_Intron,2,146330857,146330906,146330857,146330858,50,+,CGCCACTGGTGACACCGGTCATGGTACACACCTAATAGGCTGACCTCCTT,"Intron (Ralgapa2-202/Ralgapa2, intron 36 of 40)",2,146239879,146512004,272126,2,Ralgapa2-202,181098,Ralgapa2-202;Ralgapa2-211;Ralgapa2-210;Ralgapa2-205;Ralgapa2-208,Ralgapa2;Ralgapa2;Ralgapa2;Ralgapa2;Ralgapa2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,26,241694,ENSMUSG00000037110,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8523,cg04202209,-0.0000375,0.0000195,-1.921040922,0.055643448,loss,ns,0.0000209,0.0000331,0.630801229,0.528635269,pos,ns,0.039528535,0.00970668,4.072302422,0.0000592,pos,ns,4.227973325,-0.002522961,0.000333812,-7.558031836,4.65E-13,neg,yes,0.486637221,Btrc,Btrc_Intergenic_upstream,19,45299983,45300032,45299983,45299984,50,-,CGCTCACCTCTGACCAGGATATAATTGGAAAAAGAAGGTCATTGCCTCCT,Distal Intergenic,19,45363734,45507736,144003,1,Btrc-204,-63751,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,98,12234,ENSMUSG00000025217,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
12054,cg03557449,-0.00000571,0.00000167,-3.408076615,0.000740651,loss,ns,0.00000179,0.00000284,0.63073565,0.528678098,pos,ns,0.000250555,0.000833256,0.300694595,0.763848955,pos,ns,0.116992511,0.00000619,0.0000287,0.216000059,0.829129759,pos,ns,0.959814535,Efna5,Efna5_Exon,17,62607455,62607504,62607455,62607456,50,-,CGGTGTCATCTGTTCAAATAGAAAGCACACATTCCAATGAGATTTCACAT,"Exon (Efna5-201/Efna5, exon 5 of 5)",17,62604184,62881317,277134,2,Efna5-201,273813,Efna5-201;Efna5-202,Efna5;Efna5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,21,13640,ENSMUSG00000048915,conserved gene and region,17,62607324,62607456,133,*,133,11,0.578947368,1.015972222,0.082706767,8.11E-08,CpGisland,TRUE,U15,NS
24374,cg07127154,-0.0000103,0.00000305,-3.357917213,0.000883249,loss,ns,-0.00000327,0.00000519,-0.630718141,0.528689533,neg,ns,-0.003770923,0.001519397,-2.481855316,0.013599554,neg,ns,1.866475346,0.0000901,0.0000523,1.725044585,0.085516091,pos,ns,0.952662272,Ing4,Ing4_Exon,6,125047517,125047566,125047517,125047518,50,-,CGTTCCAAAGGGAAAAACTCGGATGAAGAAGCCCCCAAGACTGCCCAGAA,"Exon (Ing4-205/Ing4, exon 5 of 8)",6,125039760,125049002,9243,1,Ing4-205,7757,Acrbp-205;Acrbp-204;Acrbp-202;Acrbp-201;Acrbp-203;Ing4-205;Ing4-203;Ing4-201;Ing4-208;Ing4-207;Ing4-202;Ing4-209;Ing4-204;Ing4-206,Acrbp;Acrbp;Acrbp;Acrbp;Acrbp;Ing4;Ing4;Ing4;Ing4;Ing4;Ing4;Ing4;Ing4;Ing4,-2123;-2381;-2393;-2401;-4288;0;7681;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,5,28019,ENSMUSG00000030330,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13965,cg25555910,-0.0000865,0.0000257,-3.373259735,0.000837124,loss,ns,0.0000275,0.0000436,0.630576697,0.528781915,pos,ns,0.015901466,0.012768001,1.245415518,0.213919575,pos,ns,0.669749473,-0.000658192,0.00043909,-1.498988999,0.13489412,neg,ns,0.491939721,Mroh5,Mroh5_Intergenic_upstream,15,73870361,73870410,73870409,73870410,50,+,GAGGTAATTGGTACATTTTGTAAGCAATCATCCCCTGGCACCCTCTGCCG,Distal Intergenic,15,73796736,73839699,42964,2,Mroh5-203,-30662,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,268816,ENSMUSG00000072487,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18509,cg13080602,0.0000664,0.00000921,7.204960607,4.44E-12,gain,yes,-0.00000987,0.0000156,-0.63053251,0.528810778,neg,ns,0.005326096,0.004584387,1.161790325,0.246214356,pos,ns,0.608686628,-0.000193923,0.000157657,-1.230036468,0.219616078,neg,ns,0.076576531,Tenm4,Tenm4_fiveUTR,7,96210130,96210179,96210178,96210179,50,-,GATTGCAGCTGTTTCATGTGGGGCAGCAGTGCTGGCAGGGACGCCGGCCG,Promoter (<=1kb),7,96210146,96438966,228821,1,Tenm4-204,0,Tenm4-201;Tenm4-211;Tenm4-208;Tenm4-204;Tenm4-209;Tenm4-203;Tenm4-202,Tenm4;Tenm4;Tenm4;Tenm4;Tenm4;Tenm4;Tenm4,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,26,23966,ENSMUSG00000048078,conserved gene and region,7,96210171,96211091,921,*,921,99,0.711183496,0.850439308,0.107491857,1.95E-78,CpGisland,TRUE,U3,Pr-B
16745,cg21344777,0.0000815,0.000011,7.398505611,1.30E-12,gain,yes,0.0000118,0.0000187,0.63052305,0.528816956,pos,ns,0.014548236,0.00547953,2.655015517,0.00834012,pos,ns,2.0788277,-0.000445936,0.000188441,-2.366456285,0.018573816,neg,ns,0.332621891,Esrrb,Esrrb_Intron,12,86383978,86384027,86383978,86383979,50,+,CGGGTTCCACTCCAGGGCCTCGCCTGCGACATGCATTTTTAATCATAACA,"Intron (Esrrb-204/Esrrb, intron 1 of 6)",12,86361117,86521628,160512,1,Esrrb-204,22861,Esrrb-204,Esrrb,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,19,26380,ENSMUSG00000021255,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10477,cg22136353,-0.00000602,0.0000099,-0.607580247,0.543910713,loss,ns,0.0000106,0.0000168,0.630478009,0.528846377,pos,ns,0.002404089,0.004929315,0.487712542,0.626098204,pos,ns,0.203357542,-0.000247829,0.000169519,-1.461956417,0.144766116,neg,ns,0.783021479,Gm18974,Gm18974_Intergenic_upstream,13,53805962,53806011,53805962,53805963,50,+,CGATATTATGCCACAAAACCTGAAAGCATAATTGGTTGTTTCATTCCAGA,Distal Intergenic,13,53888627,53890855,2229,1,Gm18974-201,-82616,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,100418060,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21481,cg12938618,-0.00000104,0.00000179,-0.58045182,0.56203166,loss,ns,-0.00000192,0.00000305,-0.630425241,0.528880846,neg,ns,0.000981106,0.000893377,1.09819932,0.27296969,pos,ns,0.563885573,-0.0000525,0.0000307,-1.708678056,0.088511518,neg,ns,0.952186647,Bcl11b,Bcl11b_Intron,12,107938035,107938084,107938083,107938084,50,+,CCACTGAATTACAGGTTAAATAGCTAAATTAAATTATTGCAATTACAGCG,"Intron (Bcl11b-201/Bcl11b, intron 3 of 3)",12,107910403,108003602,93200,2,Bcl11b-201,65518,Bcl11b-201;Bcl11b-202;Bcl11b-203,Bcl11b;Bcl11b;Bcl11b,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,39,58208,ENSMUSG00000048251,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9679,cg15502196,0.0000143,0.00000656,2.176914113,0.030241206,gain,ns,0.00000702,0.0000111,0.630357528,0.528925079,pos,ns,0.00069217,0.003264829,0.212008121,0.832240022,pos,ns,0.079751403,0.0000766,0.000112277,0.682050519,0.495716283,pos,ns,0.871836045,Gm7481,Gm7481_Intergenic_upstream,12,49945378,49945427,49945426,49945427,50,+,AACAACACTAGAGCGCTTATGCTCCAGGGAGATTTGTATAGAATCTGACG,Distal Intergenic,12,49840757,49841751,995,2,Gm7481-201,-103627,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,27,37,665077,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7351,cg24075169,0.00000611,0.00000234,2.610891375,0.009469629,gain,ns,-0.00000251,0.00000398,-0.630348854,0.528930745,neg,ns,0.001128788,0.001165606,0.968413261,0.333592946,pos,ns,0.476783141,-0.0000447,0.0000401,-1.115510563,0.265495674,neg,ns,0.073732672,Crtac1,Crtac1_Intron,19,42380647,42380696,42380695,42380696,50,-,CGAGGCTGAATGAATTGGTGCATCTCGCTGCATTGGAAGCAGCTGCCTCG,"Intron (Crtac1-203/Crtac1, intron 2 of 14)",19,42268287,42431785,163499,2,Crtac1-203,51089,Crtac1-203;Crtac1-201;Gm50184-201,Crtac1;Crtac1;Gm50184,0;0;-1546,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,8,72832,ENSMUSG00000042401,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
23853,cg12231969,0.00000955,0.00000548,1.740381889,0.082784278,gain,ns,-0.00000587,0.00000932,-0.630326351,0.528945446,neg,ns,-0.006191537,0.002729797,-2.268131245,0.024008908,neg,ns,1.619627591,0.000117251,0.0000939,1.248977847,0.21261548,pos,ns,0.47710387,En1,En1_fiveUTR,1,120602487,120602536,120602487,120602488,50,-,CGATTAAAGGCGCTGCCAGCCTCACGCTCTGGGCACAGCTGAGCGTGACA,Promoter (<=1kb),1,120602418,120607992,5575,1,En1-201,69,En1-201,En1,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,36,13798,ENSMUSG00000058665,conserved gene and region,1,120602387,120602531,145,*,145,10,0.586206897,0.816441441,0.068965517,0.00000206,CpGisland,TRUE,U3,Pr-B
18737,cg21087007,-0.00000184,0.00000573,-0.321986569,0.747679887,loss,ns,0.00000613,0.00000973,0.630323602,0.528947241,pos,ns,0.002296046,0.002850046,0.805617142,0.421081147,pos,ns,0.375634202,-0.000133765,0.000098,-1.364769275,0.173315336,neg,ns,0.930804065,Dscam,Dscam_Exon,16,97038983,97039032,97038983,97038984,50,-,CGCAACATTGCCTCTCATGGTTTTCTGGTCCTCCACACGGACTGTATAGG,"Exon (Dscam-201/Dscam, exon 3 of 33)",16,96590840,97170752,579913,2,Dscam-201,131720,Dscam-201,Dscam,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,12,13508,ENSMUSG00000050272,conserved gene and region,16,97038886,97039039,154,*,154,10,0.558441558,0.844298246,0.064935065,0.00000352,CpGisland,TRUE,U15,NS
12804,cg06153126,-0.00000182,0.0000116,-0.157065288,0.87529564,loss,ns,-0.0000124,0.0000196,-0.630301423,0.52896173,neg,ns,-0.013535989,0.005753795,-2.352532171,0.019270972,neg,ns,1.715096369,0.000727315,0.000197873,3.675676388,0.000279467,pos,ns,0.358056781,Tmem33,Tmem33_Intergenic_upstream,5,67222042,67222091,67222042,67222043,50,-,CGTTTCGACTCACTGCATTCAGAACCCATGGAAGGGAATCACAAAACTGC,Distal Intergenic,5,67260565,67291461,30897,1,Tmem33-201,-38523,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,22,22,67878,ENSMUSG00000037720,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
3769,cg25135154,0.0000295,0.00000354,8.353738934,2.24E-15,gain,yes,-0.00000379,0.00000601,-0.630272359,0.528980718,neg,ns,0.001693308,0.001760116,0.962043373,0.336777618,pos,ns,0.472656779,0.000063,0.0000605,1.040728905,0.298812372,pos,ns,0.110130393,Grin1,Grin1_Exon,2,25311326,25311375,25311326,25311327,50,+,CGTCCATGCATATATACCTTGGGTCCGCGCTTGTTGTCATAGGACAGTTG,"Exon (Grin1-203/Grin1, exon 4 of 20)",2,25291181,25319095,27915,2,Grin1-203,7720,Grin1-203;Grin1-204;Grin1-207;Grin1-208;Grin1-201;Grin1-202;Grin1-206;Grin1-205;Grin1-214;Grin1-211,Grin1;Grin1;Grin1;Grin1;Grin1;Grin1;Grin1;Grin1;Grin1;Grin1,0;0;0;0;0;0;0;0;0;7788,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,7,14810,ENSMUSG00000026959,conserved gene but different region,2,25311239,25311379,141,*,141,14,0.659574468,0.937321937,0.09929078,5.96E-11,CpGisland,TRUE,NA,NRS
7872,cg04065686,0.0000019,0.00000147,1.290476828,0.197846826,gain,ns,-0.00000158,0.0000025,-0.630222951,0.529012996,neg,ns,0.000431643,0.000733625,0.58837057,0.556712001,pos,ns,0.254369416,0.0000296,0.0000252,1.173826279,0.241365633,pos,ns,0.958082171,Gtdc1,Gtdc1_Intron,2,44575950,44575999,44575998,44575999,50,-,ACATCACACCAAAAATGGCATTGCAGTGACAGCTAAGATTCCTAATGACG,"Intron (Gtdc1-203/Gtdc1, intron 7 of 10)",2,44564412,44861622,297211,2,Gtdc1-203,285623,Gtdc1-203;Gtdc1-201;Gtdc1-207;Gtdc1-208;Gtdc1-205,Gtdc1;Gtdc1;Gtdc1;Gtdc1;Gtdc1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,43,227835,ENSMUSG00000036890,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15325,cg26826798,-0.00000961,0.00000727,-1.322389048,0.187013433,loss,ns,-0.00000778,0.0000124,-0.63008074,0.529105908,neg,ns,-0.002730735,0.003618419,-0.754676291,0.451016158,neg,ns,0.345807899,-0.000139577,0.000124437,-1.121666543,0.262872326,neg,ns,0.793852665,Cacna1i,Cacna1i_Exon,15,80356119,80356168,80356167,80356168,50,+,CGCGCTGCAGGTGATCACTCTGGAAGGCTGGGTGGAGATCATGTACTACG,"Exon (Cacna1i-202/Cacna1i, exon 8 of 37)",15,80287238,80398279,111042,1,Cacna1i-202,68881,Cacna1i-202;Cacna1i-205,Cacna1i;Cacna1i,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,11,239556,ENSMUSG00000022416,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2791,cg14671961,-0.0000677,0.0000186,-3.638355457,0.000321296,loss,ns,0.0000199,0.0000316,0.630037209,0.52913435,pos,ns,-0.006938307,0.009262085,-0.749108553,0.454359817,neg,ns,0.342600084,-0.000272701,0.000318522,-0.856142466,0.392580256,neg,ns,0.597048435,Klhl14,Klhl14_Intergenic_upstream,18,21729178,21729227,21729226,21729227,50,+,TTTTCTAAATGGAAGGTGTCAGATGGTCACGCAATGTGACTGCATGTTCG,Distal Intergenic,18,21550379,21654718,104340,2,Klhl14-202,-74460,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,38,225266,ENSMUSG00000042514,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5063,cg03327468,-0.00000145,0.00000148,-0.983190819,0.326280243,loss,ns,0.00000158,0.00000251,0.629770524,0.529308614,pos,ns,0.000978765,0.000736187,1.329506561,0.184658413,pos,ns,0.7336309,-0.0000148,0.0000253,-0.584369315,0.559396881,neg,ns,0.038247864,Fosl2,Fosl2_Promoter,5,32135460,32135509,32135508,32135509,50,+,CGCAAATGACCATCTTTGGCAACGTGCGCCAATGGAACAGACCAAGGGCG,Promoter (<=1kb),5,32135801,32157842,22042,1,Fosl2-201,-292,Fosl2-201;Fosl2-202,Fosl2;Fosl2,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,8,14284,ENSMUSG00000029135,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
22960,cg17506882,-0.00000108,0.00000111,-0.973290051,0.331167998,loss,ns,0.00000118,0.00000188,0.629719238,0.529342129,pos,ns,0.000424455,0.000550007,0.771726189,0.44086449,pos,ns,0.355694881,-0.0000274,0.0000189,-1.446578052,0.149025478,neg,ns,0.972697617,Gm5357,Gm5357_Intergenic_upstream,8,116384743,116384792,116384743,116384744,50,+,CGTTGTTAGAAATAAAAAATGATGTATTAATCCGACATTCTTACAGATGG,Distal Intergenic,8,116489186,116491109,1924,1,Gm5357-201,-104394,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,15,15,384868,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26899,cg10721215,-0.0000043,0.00000217,-1.983609863,0.048181268,loss,ns,0.00000232,0.00000369,0.629685196,0.529364377,pos,ns,0.001322007,0.001079674,1.224449548,0.221712367,pos,ns,0.654210082,-0.0000729,0.0000371,-1.963479125,0.050484122,neg,ns,0.946904559,Prdm16,Prdm16_Intron,4,154494771,154494820,154494771,154494772,50,-,CGGGTATTTTAAAGGAAATGAGATCCGTGTGTTTCTGATTTATTTATACT,"Intron (Prdm16-201/Prdm16, intron 2 of 16)",4,154316125,154636866,320742,2,Prdm16-201,142046,Prdm16-201;Prdm16-202;Prdm16-203;Prdm16-204;Prdm16-205;Prdm16-206;Prdm16-210;Prdm16-207;Prdm16-209;Prdm16-212,Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,32,70673,ENSMUSG00000039410,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17763,cg26556243,-0.00000301,0.00000165,-1.817142764,0.07016068,loss,ns,-0.00000177,0.00000281,-0.629663851,0.529378327,neg,ns,0.000262574,0.00082335,0.318908928,0.750010344,pos,ns,0.124932747,-0.0000108,0.0000283,-0.38003501,0.704179665,neg,ns,0.960232425,Son,Son_Exon,16,91656312,91656361,91656360,91656361,50,-,CTGTTCAGTCTGTGGTGACAACATCGGAGCTGTCAACGATGACCGTGTCG,"Exon (Son-203/Son, exon 3 of 12)",16,91647506,91679207,31702,1,Son-203,8806,Son-203;Son-204;Son-202;Son-208;Son-201;Son-205;Son-212,Son;Son;Son;Son;Son;Son;Son,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,31,20658,ENSMUSG00000022961,conserved gene and region,16,91656231,91656409,179,*,179,11,0.603351955,0.686780607,0.061452514,0.00000161,CpGisland,TRUE,U10,Tr-S
22000,cg15177237,-0.0000502,0.0000167,-3.012742224,0.00280234,loss,ns,-0.0000178,0.0000283,-0.629628518,0.529401419,neg,ns,-0.00718817,0.008289573,-0.86713399,0.386539296,neg,ns,0.412806348,-0.000498944,0.000285078,-1.750201808,0.081072819,neg,ns,0.098931464,Zfp143,Zfp143_fiveUTR,7,110061770,110061819,110061818,110061819,50,-,TCGGAGGTTCGTATATAAATGTGTTTTTACCCAGTGTGCATTATTCTCCG,Promoter (<=1kb),7,110061217,110094808,33592,1,Zfp143-204,553,Zfp143-204;Zfp143-205;Zfp143-201;Zfp143-202,Zfp143;Zfp143;Zfp143;Zfp143,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,7,20841,ENSMUSG00000061079,conserved gene but different region,7,110061325,110061866,542,*,542,40,0.590405904,0.850196078,0.073800738,2.91E-25,CpGisland,TRUE,U1,Pr-A
10099,cg09820272,0.000146782,0.0000171,8.588263479,4.37E-16,gain,yes,-0.0000183,0.000029,-0.629515961,0.529474984,neg,ns,0.020525579,0.008506389,2.412960176,0.016403542,pos,ns,1.785062368,-0.000525474,0.000292534,-1.796284776,0.07342277,neg,ns,0.314913535,Gm28308,Gm28308_Exon,6,52173859,52173908,52173859,52173860,50,+,CGATAATAGGTTCTGTCTTAGAAACTGCTATGTAATTTGATGTATGGGGG,"Exon (Gm15050-201/Gm15050-201, exon 2 of 2)",6,52163359,52213339,49981,2,Gm28308-201,39431,Gm28308-201;Hoxa3-201;Hoxa3-202,Gm28308;Hoxa3;Hoxa3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,30,103,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27215,cg23891060,-0.0000207,0.00000872,-2.36843186,0.018476721,loss,ns,-0.00000933,0.0000148,-0.629512438,0.529477286,neg,ns,-0.014438842,0.004340988,-3.326164809,0.000986325,neg,ns,3.005980032,0.000238724,0.000149286,1.599105117,0.110815915,pos,ns,0.712596432,Cdkl5,Cdkl5_Exon,X,160811628,160811677,160811628,160811629,50,+,CGCCACTCCTTTGGTCTGCTGCTTGGAGTGCTAGCAGAATGAATGGATTT,"Exon (Cdkl5-203/Cdkl5, exon 16 of 19)",20,160771923,160928488,156566,2,Cdkl5-203,116811,Cdkl5-203;Cdkl5-204;Cdkl5-201;Cdkl5-202;Cdkl5-205,Cdkl5;Cdkl5;Cdkl5;Cdkl5;Cdkl5,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,4,382253,ENSMUSG00000031292,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27911,cg10260749,-0.00000233,0.00000292,-0.797657022,0.425680113,loss,ns,-0.00000312,0.00000496,-0.629465944,0.529507676,neg,ns,-0.000931813,0.001451975,-0.64175542,0.521506235,neg,ns,0.282740495,0.0000411,0.0000499,0.822594997,0.41137063,pos,ns,0.95114588,Prox1,Prox1_Exon,1,190161987,190162036,190162035,190162036,50,-,AAAGGCATCATGGCATCTTCATACGAGTTCGCCCTCTTCAGCAGCTTGCG,"Exon (Prox1-202/Prox1, exon 2 of 5)",1,190118035,190170714,52680,2,Prox1-202,8678,Prox1-202;Prox1-201;Prox1-203,Prox1;Prox1;Prox1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,19,59,19130,ENSMUSG00000010175,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14244,cg24178740,0.0000599,0.00000872,6.869712149,3.53E-11,gain,yes,-0.00000932,0.0000148,-0.629085824,0.52975616,neg,ns,-0.0000854,0.004341712,-0.01967858,0.984312437,neg,ns,0.006867027,0.000602712,0.000149311,4.036617906,0.0000684,pos,ns,0.374482406,Fev,Fev_Promoter,1,74885841,74885890,74885889,74885890,50,+,GGTTCCCGTCTCCAGGCTGCGTTATCTGCATCTTCACTTTTAAATTTCCG,Promoter (<=1kb),1,74881509,74885419,3911,2,Fev-201,-422,Cryba2-201;Cryba2-202;Fev-201;Fev-202;Fev-203,Cryba2;Cryba2;Fev;Fev;Fev,7253;7002;0;0;-1233,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,4,260298,ENSMUSG00000055197,mapped to different genes,1,74885889,74885971,83,*,83,10,0.710843374,1.162464986,0.120481928,9.52E-09,CpGisland,TRUE,U3,Pr-B
23829,cg24001739,-0.00000379,0.00000131,-2.890374834,0.004119394,loss,ns,-0.0000014,0.00000223,-0.62904857,0.529780517,neg,ns,0.000159474,0.000653073,0.244190278,0.807244992,pos,ns,0.09299464,-0.0000221,0.0000225,-0.985141645,0.325322754,neg,ns,0.980998294,Galnt2l,Galnt2l_Intron,8,120512429,120512478,120512429,120512430,50,-,CGTAAAAATTCAATTAATTCCAGAAGGCAGATTAAATATAAGTGAGTTTT,"Intron (Galnt2l-201/Galnt2l, intron 1 of 15)",8,119910841,124345722,4434882,1,Galnt2l-201,601588,Galnt2l-201;Gse1-206;Gse1-201,Galnt2l;Gse1;Gse1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,28,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3380,cg11844123,0.0000108,0.00000203,5.319419342,0.0000002,gain,yes,-0.00000217,0.00000344,-0.628940378,0.529851255,neg,ns,0.003609879,0.001008981,3.577746278,0.000401992,pos,ns,3.395782179,-0.000125246,0.0000347,-3.60952205,0.000357572,neg,ns,0.036939463,Bcl6,Bcl6_Intron,16,23983255,23983304,23983255,23983256,50,+,CGTTAATGAAGATGGAAGGCACTAACTGTCCTTGGAAAGCGATGAGTCAA,"Intron (Bcl6-201/Bcl6, intron 1 of 9)",16,23965052,23988852,23801,2,Bcl6-201,5548,Bcl6-201,Bcl6,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,18,12053,ENSMUSG00000022508,conserved gene and region,16,23983220,23983527,308,*,308,24,0.590909091,0.899598394,0.077922078,5.93E-16,CpGisland,TRUE,U1,Pr-A
12609,cg24866378,0.0000509,0.00000896,5.687115657,2.99E-08,gain,yes,-0.00000957,0.0000152,-0.628937481,0.529853149,neg,ns,0.015435194,0.004457175,3.462999012,0.000609312,pos,ns,3.21516028,-0.000215874,0.000153282,-1.408346817,0.160030503,neg,ns,0.110312561,Zfp609,Zfp609_Intron,9,65826267,65826316,65826315,65826316,50,-,CTCTCAGACAAGACTTGAACCTATGACCTTCACTGTGTACACAATAGGCG,"Intron (Zfp609-201/Zfp609, intron 1 of 9)",9,65692391,65827564,135174,2,Zfp609-201,1248,Trip4-210;Trip4-203;Zfp609-201,Trip4;Trip4;Zfp609,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,10,214812,ENSMUSG00000040524,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
7024,cg18599508,0.0000337,0.0000255,1.322938437,0.186830863,gain,ns,0.0000272,0.0000433,0.628795018,0.529946301,pos,ns,0.036132436,0.012693676,2.84649111,0.004715163,pos,ns,2.326503253,-0.000865369,0.000436534,-1.982360335,0.048321581,neg,ns,0.326008961,Gm50466,Gm50466_Intron,7,40688760,40688809,40688808,40688809,50,+,GAAACAACCATCTGGCTTTTGCAACTGTGTGCCCTTTGGCCTGCTCAGCG,"Intron (4933402C06Rik-201/4933402C06Rik-201, intron 3 of 3)",7,40639399,40639834,436,2,Gm50466-201,-48926,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6191,cg02205352,-0.00000517,0.00000127,-4.06447846,0.0000611,loss,ns,0.00000136,0.00000216,0.628580463,0.530086608,pos,ns,0.000820384,0.000633644,1.294708559,0.19638429,pos,ns,0.706893257,-0.0000435,0.0000218,-1.998246691,0.04656312,neg,ns,0.058914387,Pura,Pura_Exon,18,36287815,36287864,36287815,36287816,50,+,CGAGGGCACCTCCTTGACTGTGGACAACAAGCGCTTCTTCTTCGATGTGG,"Exon (Pura-201/Pura, exon 2 of 2)",18,36281097,36292535,11439,1,Pura-201,6718,Pura-201,Pura,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,13,19,19290,ENSMUSG00000043991,conserved gene and region,18,36286687,36288029,1343,*,1343,129,0.68652271,0.823041768,0.096053611,4.14E-95,CpGisland,TRUE,U4,Pr-F
2621,cg22865208,-0.00000639,0.00000576,-1.110176946,0.267783179,loss,ns,-0.00000615,0.00000978,-0.62857273,0.530091666,neg,ns,-0.007474199,0.002865467,-2.608370625,0.009538115,neg,ns,2.020537443,0.000260116,0.0000985,2.639612905,0.00871985,pos,ns,0.860696494,Zswim8,Zswim8_Exon,14,20722872,20722921,20722920,20722921,50,+,GTGCTGAGCCCGTTTGTGCTGCAGGAGATCGTCATGGAGACGCTGCAGCG,"Exon (Zswim8-201/Zswim8, exon 25 of 26)",14,20707552,20723619,16068,1,Zswim8-201,15320,Ndst2-202;Ndst2-205;Ndst2-201;Ndst2-204;Ndst2-207;Zswim8-201;Zswim8-208;Zswim8-204;Zswim8-203;Zswim8-209;Zswim8-207;Zswim8-202;Zswim8-210;Zswim8-214,Ndst2;Ndst2;Ndst2;Ndst2;Ndst2;Zswim8;Zswim8;Zswim8;Zswim8;Zswim8;Zswim8;Zswim8;Zswim8;Zswim8,0;0;0;0;0;0;0;0;0;0;4271;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,13,14,268721,ENSMUSG00000021819,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26052,cg03811319,0.000180454,0.0000137,13.21455366,6.29E-32,gain,yes,-0.0000146,0.0000232,-0.628569441,0.530093816,neg,ns,0.00246231,0.006796577,0.362286828,0.717384551,pos,ns,0.14424798,0.0000244,0.000233734,0.104237108,0.917048592,pos,ns,0.522569736,Cdkn1c,Cdkn1c_Intergenic_downstream,7,143438378,143438427,143438426,143438427,50,+,TTCTCCAAAATGGGATCTTAAGTGATTCTGAATGAAAACAAATTGGCCCG,Distal Intergenic,7,143458722,143459311,590,2,Cdkn1c-204,20884,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,5,12577,ENSMUSG00000037664,mapped to different genes,7,143438426,143438545,120,*,120,14,0.766666667,0.795454546,0.116666667,5.72E-12,CpGisland,TRUE,U3,Pr-B
25472,cg22540725,-0.0000056,0.00000183,-3.057731558,0.002424531,loss,ns,0.00000196,0.00000311,0.628531074,0.530118909,pos,ns,-0.000509555,0.000911465,-0.559050175,0.576531109,neg,ns,0.239177254,0.0000459,0.0000313,1.463361271,0.144381732,pos,ns,0.973090936,Gm8762,Gm8762_Intergenic_downstream,1,136777622,136777671,136777622,136777623,50,+,CGGAATGGAAATGACTACGAATATCCCACCACATGTTGCTGTTTAATGCA,Distal Intergenic,1,136789182,136789520,339,2,Gm8762-201,11849,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,4,,NA,mapped to different genes,1,136777510,136777697,188,*,188,11,0.473404255,1.044444444,0.058510638,0.00000258,CpGisland,TRUE,U11,Tr-P
24631,cg08774452,-0.0000185,0.00000975,-1.894603653,0.059075384,loss,ns,0.0000104,0.0000166,0.628503665,0.530136834,pos,ns,0.003384741,0.00485264,0.697505083,0.486009546,pos,ns,0.313355201,-0.000157745,0.000166882,-0.945249527,0.34526766,neg,ns,0.215336212,Tmem132c,Tmem132c_Intron,5,127324246,127324295,127324294,127324295,50,+,CCAATGTTAGGTTTGAAAGCCACCCACTGCTGTAAACTCAGCTGGATCCG,"Intron (Tmem132c-201/Tmem132c, intron 1 of 8)",5,127241808,127565793,323986,1,Tmem132c-201,82438,Tmem132c-201,Tmem132c,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,208213,ENSMUSG00000034324,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2339,cg05840882,-0.0000108,0.00000787,-1.370074645,0.171655028,loss,ns,0.0000084,0.0000134,0.628442515,0.530176829,pos,ns,0.001741831,0.003917696,0.444605997,0.656914755,pos,ns,0.182490983,-0.0000351,0.000134729,-0.260691391,0.79450359,neg,ns,0.832866228,Sympk,Sympk_Exon,7,19052428,19052477,19052476,19052477,50,-,GCAGCAGCTGATGGAGCAGAGCCCCCTGCCCATGCTGCTCATGAGGACCG,Promoter (<=1kb),7,19052434,19053884,1451,1,Sympk-203,0,Rsph6a-201;Rsph6a-202;Rsph6a-203;Sympk-201;Sympk-206;Sympk-205;Sympk-207;Sympk-202;Sympk-203,Rsph6a;Rsph6a;Rsph6a;Sympk;Sympk;Sympk;Sympk;Sympk;Sympk,-2213;-2222;-4918;0;28002;6734;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,68188,ENSMUSG00000023118,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4961,cg10446143,-0.00000106,0.00000238,-0.446404025,0.655617089,loss,ns,-0.00000254,0.00000404,-0.628440571,0.5301781,neg,ns,-0.000226087,0.001183786,-0.190986347,0.84866131,neg,ns,0.071265597,0.0000769,0.0000407,1.888305575,0.059918507,pos,ns,0.068510154,Pknox1,Pknox1_fiveUTR,17,31564844,31564893,31564844,31564845,50,+,CGATTGCTGCAGCCGCTTGTCAGTGTGATGAAGATTGGCACCCAGGTAAG,Promoter (<=1kb),17,31564862,31605492,40631,1,Pknox1-202,0,Pknox1-201;Pknox1-206;Pknox1-212;Pknox1-209;Pknox1-202;Pknox1-208,Pknox1;Pknox1;Pknox1;Pknox1;Pknox1;Pknox1,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,8,8,18771,ENSMUSG00000006705,conserved gene and region,17,31564426,31564858,433,*,433,56,0.769053118,0.874873719,0.129330254,1.05E-49,CpGisland,TRUE,U1,Pr-A
2100,cg17188793,0.000258912,0.0000337,7.673008921,2.20E-13,gain,yes,-0.000036,0.0000573,-0.628393753,0.530208722,neg,ns,0.020741463,0.016794342,1.235026818,0.217755751,pos,ns,0.662030367,-0.0000644,0.000577556,-0.111567859,0.911238259,neg,ns,0.469976906,Skida1,Skida1_fiveUTR,2,18048436,18048485,18048484,18048485,50,-,TGTCTCAAGGCATCCTGCTAATAAAATAACAAAGACTGTTATTCCCGGCG,Promoter (<=1kb),2,18045253,18048449,3197,2,Skida1-201,0,Skida1-205;Skida1-202;Skida1-201;Skida1-203;Skida1-204,Skida1;Skida1;Skida1;Skida1;Skida1,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,8,31,72668,ENSMUSG00000054074,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
26357,cg06733558,0.00000204,0.00000447,0.455640161,0.648967748,gain,ns,-0.00000478,0.0000076,-0.628353457,0.530235078,neg,ns,0.001592131,0.002227076,0.714897274,0.475210543,pos,ns,0.323113933,-0.0000978,0.0000766,-1.277332301,0.202440769,neg,ns,0.919218091,Kiz,Kiz_Intron,2,146959055,146959104,146959055,146959056,50,+,CGAAGGAGTGAGTCCTAATAGGAAGCCGTTCTCCAAGTAAAGACCACTTG,"Intron (Kiz-201/Kiz, intron 12 of 13)",2,146855864,146970097,114234,1,Kiz-201,103191,Kiz-201;Kiz-202,Kiz;Kiz,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,29,228730,ENSMUSG00000074749,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27537,cg22804239,-0.00000329,0.00000533,-0.61781484,0.537150987,loss,ns,0.00000569,0.00000905,0.6283048,0.530266904,pos,ns,0.000153965,0.002652024,0.058055501,0.953741823,pos,ns,0.020569172,-0.0000414,0.0000912,-0.454406503,0.649854281,neg,ns,0.772744137,Gm5265,Gm5265_Intergenic_downstream,1,169313318,169313367,169313366,169313367,50,+,TTTCATCACTCGTGCCAACAGTCGGCAAATTCACTGACAGTTCAAATGCG,Distal Intergenic,1,169453528,169453869,342,2,Gm5265-201,140502,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,13,13,383613,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24043,cg07053581,1.66E-08,0.00000229,0.007245043,0.994224003,gain,ns,0.00000245,0.00000389,0.628277192,0.530284963,pos,ns,0.002532877,0.001141002,2.219870195,0.027150766,pos,ns,1.56621791,-0.0000623,0.0000392,-1.588206743,0.113258966,neg,ns,0.067163778,Galnt2l,Galnt2l_Intron,8,122282846,122282895,122282846,122282847,50,-,CGATAGGGCGGCCCCGATCTGGGCTCAGATAAAGTTTAAAATATTACATT,"Intron (Galnt2l-201/Galnt2l, intron 1 of 15)",8,119910841,124345722,4434882,1,Galnt2l-201,2372005,Galnt2l-201;Zfpm1-201,Galnt2l;Zfpm1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,28,,NA,mapped to different genes,8,122281671,122282861,1191,*,1191,159,0.755667506,0.946376544,0.133501259,1.15E-142,CpGisland,TRUE,U1,Pr-A
21760,cg27149782,-0.0000231,0.00000489,-4.727066843,0.00000346,loss,ns,-0.00000521,0.0000083,-0.628259539,0.53029651,neg,ns,-0.009258805,0.002431824,-3.807349407,0.000169296,neg,ns,3.771354138,0.00021057,0.0000836,2.517875048,0.012310149,pos,ns,0.917952684,Zfhx3,Zfhx3_Exon,8,108957017,108957066,108957017,108957018,50,+,CGAGCCCGGTGGAGGGTCCCAAAGACCCCAGCTGCCCCAAGGACAGTGGT,"Exon (Zfhx3-204/Zfhx3, exon 16 of 16)",8,107942644,108961630,1018987,1,Zfhx3-204,1014373,Zfhx3-204;Zfhx3-201,Zfhx3;Zfhx3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,46,177,11906,ENSMUSG00000038872,conserved gene and region,8,108956951,108957024,74,*,74,9,0.608108108,1.316205534,0.121621622,6.35E-08,CpGisland,TRUE,NA,NRS
16772,cg15072557,-0.00000409,0.00000204,-2.00811368,0.045498426,loss,ns,-0.00000217,0.00000346,-0.628231507,0.530314847,neg,ns,0.0000366,0.001013479,0.03607518,0.971245632,pos,ns,0.012670922,-0.0000368,0.0000349,-1.057018167,0.291326301,neg,ns,0.950540232,Rps6kb1,Rps6kb1_threeUTR,11,86516116,86516165,86516116,86516117,50,+,CGGCTTCAGGTCTCTGTAGATGATCCCCTTTTGATGTAAATGCCCCAAAG,3' UTR,11,86498871,86544805,45935,2,Rps6kb1-207,28640,Rps6kb1-207;Rps6kb1-201;Rps6kb1-205;Rps6kb1-203;Rps6kb1-202;Rps6kb1-206,Rps6kb1;Rps6kb1;Rps6kb1;Rps6kb1;Rps6kb1;Rps6kb1,0;0;-4471;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,4,72508,ENSMUSG00000020516,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3120,cg20966972,-0.00000106,0.00000201,-0.528983671,0.597195328,loss,ns,0.00000215,0.00000342,0.628214566,0.530325929,pos,ns,0.000943779,0.001001617,0.942255293,0.346795661,pos,ns,0.459926345,0.00000897,0.0000344,0.260439054,0.794698028,pos,ns,0.073838342,Kat6a,Kat6a_fiveUTR,8,22859539,22859588,22859587,22859588,50,+,GGAGCTCACTGTCTCCAAGATGGCGGCCGTGTCAGTTTGGGGCATCTCCG,Promoter (<=1kb),8,22859549,22943259,83711,1,Kat6a-201,0,Kat6a-202;Kat6a-204;Kat6a-201,Kat6a;Kat6a;Kat6a,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,6,244349,ENSMUSG00000031540,conserved gene and region,8,22858828,22860104,1277,*,1277,173,0.773688332,0.929039719,0.135473767,1.78E-156,CpGisland,TRUE,U1,Pr-A
2003,cg16985572,0.00000611,0.0000055,1.110910715,0.267467672,gain,ns,0.00000587,0.00000935,0.628201189,0.530334679,pos,ns,-0.002217982,0.002739355,-0.809672824,0.418749285,neg,ns,0.378045922,0.0000516,0.0000942,0.547681473,0.584304742,pos,ns,0.795829434,Prune2,Prune2_Intron,19,17006898,17006947,17006898,17006899,50,-,CGGGAAGCTTCATCAGAGAGGCAGGGAGTAAAGAGTTTGTTAAAGAGTAG,"Intron (Prune2-205/Prune2, intron 4 of 6)",19,16956118,17055782,99665,1,Prune2-205,50780,Prune2-205;Prune2-201,Prune2;Prune2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,8,353211,ENSMUSG00000039126,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12442,cg04991486,0.0000653,0.0000104,6.264149723,1.25E-09,gain,yes,-0.0000111,0.0000177,-0.628151849,0.530366955,neg,ns,0.005677701,0.005185698,1.094877071,0.27442043,pos,ns,0.56158356,-0.000347647,0.000178336,-1.949396458,0.052149627,neg,ns,0.090893284,Onecut2,Onecut2_fiveUTR,18,64340023,64340072,64340023,64340024,50,+,CGGCAGAGCCCTTCTGGACAGCTCCCGCTCACCCAAACAGAAGACGTCGG,Promoter (<=1kb),18,64340020,64400987,60968,1,Onecut2-201,3,Onecut2-201,Onecut2,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,19,225631,ENSMUSG00000045991,conserved gene but different region,18,64339929,64340544,616,*,616,67,0.73538961,0.829721362,0.108766234,1.14E-53,CpGisland,TRUE,NA,NRS
21420,cg20759093,-3.99E-08,0.000000386,-0.103510705,0.917624585,loss,ns,0.000000412,0.000000655,0.62813011,0.530381176,pos,ns,-0.000265064,0.000192007,-1.380493409,0.168429349,neg,ns,0.77358223,0.00000703,0.0000066,1.064688221,0.287845618,pos,ns,0.990377579,Zswim6,Zswim6_Exon,13,107726931,107726980,107726979,107726980,50,-,GTGGCCAGCTTGTAGGCCCTCATGGGGTACCCGCGGTGCTCCATGTACCG,"Exon (Zswim6-204/Zswim6, exon 13 of 13)",13,107724617,107890064,165448,2,Zswim6-204,163084,Zswim6-204;Zswim6-201;Zswim6-203;Zswim6-202,Zswim6;Zswim6;Zswim6;Zswim6,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,14,26,67263,ENSMUSG00000032846,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22379,cg03667077,0.0000318,0.00000676,4.704205817,0.00000384,gain,ns,-0.00000721,0.0000115,-0.627715456,0.530652467,neg,ns,-0.002246563,0.003363496,-0.667924971,0.504678445,neg,ns,0.296985244,0.0000283,0.00011567,0.244795332,0.806776866,pos,ns,0.752997909,Atp2b2,Atp2b2_Exon,6,113842277,113842326,113842277,113842278,50,+,CGACTCATTTCTTTGGTTTTTGGAGTAAAAGTCGCTGTTGGTCATGTCAC,"Exon (Atp2b2-203/Atp2b2, exon 4 of 22)",6,113743831,114042026,298196,2,Atp2b2-203,199700,Atp2b2-203;Atp2b2-201;Atp2b2-206;Atp2b2-208;Atp2b2-202;Atp2b2-204;Atp2b2-205;Atp2b2-207,Atp2b2;Atp2b2;Atp2b2;Atp2b2;Atp2b2;Atp2b2;Atp2b2;Atp2b2,0;0;0;0;0;0;68256;200287,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,8,11941,ENSMUSG00000030302,conserved gene and region,6,113842109,113842310,202,*,202,12,0.579207921,0.720142603,0.059405941,0.000000649,CpGisland,TRUE,NA,NRS
15360,cg13418055,-0.0000174,0.00000499,-3.490735409,0.000551588,loss,ns,0.00000532,0.00000848,0.627700618,0.530662176,pos,ns,-0.001721877,0.00248325,-0.693396751,0.488579792,neg,ns,0.311064499,0.0000588,0.0000854,0.687958179,0.491993554,pos,ns,0.906711386,Gm49043,Gm49043_Intergenic_downstream,14,80514266,80514315,80514314,80514315,50,-,GTGCTTCACATCTGTGAGATGTTCAGCTTGACTTTATAATGAGTTCACCG,Distal Intergenic,14,80442405,80442870,466,1,Gm49043-201,71910,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14884,cg00270194,-0.0000151,0.00000421,-3.588892621,0.000385852,loss,ns,-0.00000449,0.00000715,-0.627667851,0.530683618,neg,ns,-0.002957524,0.002095547,-1.411337254,0.159148031,neg,ns,0.798198731,-0.0000559,0.0000721,-0.77512309,0.438857779,neg,ns,0.88109708,Flot2,Flot2_threeUTR,11,78054839,78054888,78054839,78054840,50,-,CGAGGGGGTAGCTTTAACTGTGACGGGTGTCGCCCAGGTATAGTAACTCA,3' UTR,11,78037931,78060434,22504,1,Flot2-201,16908,Flot2-201;Flot2-205;Flot2-203;Flot2-202;Flot2-204,Flot2;Flot2;Flot2;Flot2;Flot2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,13,14252,ENSMUSG00000061981,conserved gene but different region,11,78054805,78054920,116,*,116,9,0.612068966,0.836538462,0.077586207,0.00000318,CpGisland,TRUE,NA,NRS
10929,cg19871542,-0.0000237,0.00000431,-5.501052114,7.91E-08,loss,yes,-0.0000046,0.00000733,-0.627584713,0.530738021,neg,ns,0.011156385,0.002146089,5.198472153,0.000000365,pos,ns,6.437245234,-0.000433322,0.0000738,-5.871263953,1.11E-08,neg,yes,0.914117466,Tcf7l2,Tcf7l2_Intron,19,55888988,55889037,55888988,55888989,50,-,CGACTGATGAGACCAGAGGCTCCGCCAATAAAAGGTTACAGTACGTGATT,"Intron (Tcf7l2-213/Tcf7l2, intron 4 of 13)",19,55741820,55933229,191410,1,Tcf7l2-213,147168,Tcf7l2-213;Tcf7l2-201;Tcf7l2-208;Tcf7l2-211;Tcf7l2-212;Tcf7l2-206;Tcf7l2-204;Tcf7l2-205;Tcf7l2-222;Tcf7l2-215;Tcf7l2-214;Tcf7l2-207;Tcf7l2-202;Tcf7l2-209;Tcf7l2-210;Tcf7l2-217;Tcf7l2-220,Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,55,88,21416,ENSMUSG00000024985,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9315,cg20162200,-0.0000144,0.00000677,-2.125619143,0.034325319,loss,ns,0.00000721,0.0000115,0.627575022,0.530744363,pos,ns,-0.000494335,0.003367185,-0.146809539,0.883377783,neg,ns,0.053853527,-0.000149701,0.000115797,-1.292781531,0.197049304,neg,ns,0.899127423,Gm5237,Gm5237_Promoter,18,48074254,48074303,48074302,48074303,50,+,GAAAACAAGATGTGACAAGCAGTTTGACACCGGCCCTCCAGTAATTTCCG,Promoter (4-5kb),18,48068322,48070022,1701,2,Gm5237-201,-4232,Gm5237-201,Gm5237,-4232,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,1,1,383326,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23624,cg14852839,0.0000557,0.00000819,6.794020476,5.59E-11,gain,yes,-0.00000873,0.0000139,-0.627569532,0.530747956,neg,ns,0.018508944,0.004076873,4.539984888,0.00000806,pos,ns,5.093577462,-0.000475557,0.000140203,-3.391909021,0.000784081,neg,ns,0.249906688,Gm3508,Gm3508_Exon,1,119329185,119329234,119329185,119329186,50,-,CGGGCTGGAGGACTCATTGTCAAAAAATTGTCCCTCGAAAAATTAGCATG,"Exon (Gm29455-202/Gm29455-202, exon 1 of 2)",1,119241962,119242753,792,2,Gm3508-201,-86481,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,8,100041778,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3664,cg27006413,0.0000439,0.0000104,4.225496057,0.0000314,gain,ns,-0.0000111,0.0000176,-0.627271938,0.530942721,neg,ns,0.006349422,0.005170367,1.22804084,0.220363218,pos,ns,0.656860895,-0.0000761,0.000177809,-0.427751008,0.669129403,neg,ns,0.452619161,Erfl,Erfl_Promoter,7,24951339,24951388,24951387,24951388,50,-,ATTGAATGTTTTGCTTTCGCCCAAATTGAAACATTAAACAACACGGGACG,Promoter (6-7kb),7,24927445,24944494,17050,2,Erfl-201,-6894,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,29,36,,NA,mapped to different genes,7,24951274,24951467,194,*,194,18,0.567010309,1.164,0.092783505,1.92E-13,CpGisland,TRUE,U13,Hc-P
27468,cg15406797,-0.00000957,0.00000357,-2.683286379,0.007681624,loss,ns,-0.0000038,0.00000606,-0.627261637,0.530949464,neg,ns,0.000621497,0.00177572,0.349997112,0.726578535,pos,ns,0.138717436,-0.0000955,0.0000611,-1.563666052,0.118916241,neg,ns,0.94913909,Pbx1,Pbx1_Intron,1,168327610,168327659,168327658,168327659,50,+,TAGCCTAATAGCATCCCATTAACATAATTGCCAACACAACTAGTGTTCCG,"Intron (Pbx1-208/Pbx1, intron 2 of 7)",1,168119364,168432270,312907,2,Pbx1-208,104611,Pbx1-208;Pbx1-205;Pbx1-206;Pbx1-201;Pbx1-202;Pbx1-204,Pbx1;Pbx1;Pbx1;Pbx1;Pbx1;Pbx1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,84,18514,ENSMUSG00000052534,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15543,cg20688459,-0.00000065,0.0000056,-0.116059423,0.907680594,loss,ns,0.00000597,0.00000951,0.627202269,0.530988322,pos,ns,-0.00479728,0.002786963,-1.721328937,0.086188808,neg,ns,1.064549125,0.000109896,0.0000958,1.146620656,0.252422682,pos,ns,0.872318009,Gm50297,Gm50297_Intergenic_downstream,18,81681864,81681913,81681912,81681913,50,-,TCCTAATTAATAATGATTACTCCCAAAATGTGCAAATGGAACGATAAACG,Distal Intergenic,18,82261062,82261262,201,2,Gm50297-201,579398,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,17,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4529,cg20316549,0.0000541,0.00000744,7.275122115,2.85E-12,gain,yes,-0.00000792,0.0000126,-0.627162685,0.531014233,neg,ns,0.001366244,0.003701768,0.369078643,0.712321063,pos,ns,0.147324214,0.000138909,0.000127303,1.091162846,0.27604859,pos,ns,0.252238821,Mnx1,Mnx1_Promoter,5,29485177,29485226,29485225,29485226,50,+,AGGCAAGATAATTTGGCTAATGAACTCGTTAAAGGGCCCCTGGTGACCCG,Promoter (6-7kb),5,29473261,29478470,5210,2,Mnx1-201,-6707,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,6,8,15285,ENSMUSG00000001566,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
3425,cg02766818,0.00000992,0.00000229,4.327463293,0.0000204,gain,ns,-0.00000244,0.0000039,-0.627148551,0.531023484,neg,ns,-0.001411444,0.001141146,-1.23686601,0.217073007,neg,ns,0.663394178,0.0000369,0.0000392,0.941063006,0.347405304,pos,ns,0.068211011,A830031A19Rik,A830031A19Rik_Exon,11,24076516,24076565,24076564,24076565,50,+,GTAAAACTGAAAGTATCCCACGCCAGAGTGAAGCCCGCTTTTTGACAGCG,Promoter (1-2kb),11,24048955,24075054,26100,2,A830031A19Rik-201,-1462,A830031A19Rik-201;Bcl11a-201;Bcl11a-203;Bcl11a-205;Bcl11a-202;Bcl11a-204,A830031A19Rik;Bcl11a;Bcl11a;Bcl11a;Bcl11a;Bcl11a,0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,23,268391,NA,mapped to different genes,11,24076381,24076583,203,*,203,22,0.630541872,1.145128205,0.108374384,6.83E-18,CpGisland,TRUE,NA,NRS
18786,cg00483633,-0.00000381,0.00000211,-1.801579068,0.072583186,loss,ns,-0.00000225,0.00000359,-0.627114664,0.531045666,neg,ns,-0.000915476,0.001051686,-0.870484086,0.384709473,neg,ns,0.414867119,-0.0000264,0.0000362,-0.730702027,0.465513061,neg,ns,0.932520853,Socs7,Socs7_Exon,11,97377012,97377061,97377012,97377013,50,-,CGCTGCCTACATCTGTCCTTGTGGCTCCGATGGGGTCTTCCTTGCAGTCT,"Exon (Socs7-203/Socs7, exon 4 of 10)",11,97362435,97398542,36108,1,Socs7-203,14577,Socs7-203;Socs7-201;Socs7-202,Socs7;Socs7;Socs7,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,192157,ENSMUSG00000038485,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19677,cg23234179,0.00000137,0.0000044,0.312498932,0.754871481,gain,ns,0.00000468,0.00000747,0.627108027,0.531050011,pos,ns,-0.000251191,0.002187823,-0.114813379,0.908667373,neg,ns,0.041595066,0.0000467,0.0000752,0.620352767,0.535481331,pos,ns,0.896511858,1700017N19Rik,1700017N19Rik_fiveUTR,10,100594549,100594598,100594549,100594550,50,-,CGATTCCGACACTGTGAAGAGGCCCTTGGCAGTGACACTGTGTGCTCATT,5' UTR,10,100590484,100618143,27660,1,1700017N19Rik-210,4065,1700017N19Rik-210;1700017N19Rik-205;1700017N19Rik-203;1700017N19Rik-204;1700017N19Rik-209;1700017N19Rik-202;1700017N19Rik-201;1700017N19Rik-206;1700017N19Rik-207;4930430F08Rik-205,1700017N19Rik;1700017N19Rik;1700017N19Rik;1700017N19Rik;1700017N19Rik;1700017N19Rik;1700017N19Rik;1700017N19Rik;1700017N19Rik;4930430F08Rik,0;0;0;0;0;0;0;0;0;-4126,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,2,66605,ENSMUSG00000056912,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27484,cg09333509,0.0000989,0.0000123,8.037105641,1.95E-14,gain,yes,-0.0000131,0.0000209,-0.626953143,0.531151402,neg,ns,-0.005310097,0.006127524,-0.866597579,0.386832779,neg,ns,0.412476732,0.000461174,0.000210725,2.188508907,0.029378466,pos,ns,0.809862028,Pbx1,Pbx1_Intron,1,168357925,168357974,168357925,168357926,50,+,CGACAAACGCCTGTCGAGTGACAGTTGGGCTAAGCTGCACTGAAAGAGAA,"Intron (Pbx1-208/Pbx1, intron 2 of 7)",1,168119364,168432270,312907,2,Pbx1-208,74296,Pbx1-208;Pbx1-205;Pbx1-206;Pbx1-201;Pbx1-202;Pbx1-204,Pbx1;Pbx1;Pbx1;Pbx1;Pbx1;Pbx1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,84,18514,ENSMUSG00000052534,conserved gene and region,1,168357767,168357940,174,*,174,14,0.568965517,1.0875,0.08045977,1.09E-09,CpGisland,TRUE,U9,En-Pp
26225,cg02951320,-0.0000105,0.00000605,-1.73689819,0.083398458,loss,ns,-0.00000644,0.0000103,-0.626858764,0.531213189,neg,ns,0.002715216,0.003010224,0.90199785,0.367758286,pos,ns,0.434437533,-0.000289007,0.000103521,-2.79176104,0.005567596,neg,ns,0.927799358,Sox5,Sox5_Intron,6,144639178,144639227,144639226,144639227,50,+,TAAGATTAGGTGACAGGAATCTCATTATTGCTATTTCCACAAAACAGTCG,"Intron (Sox5-209/Sox5, intron 1 of 13)",6,143843739,144781977,938239,2,Sox5-209,142750,Sox5-209;Sox5-212,Sox5;Sox5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,71,20678,ENSMUSG00000041540,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27196,cg17635618,-0.00000545,0.00000294,-1.854664503,0.064593558,loss,ns,-0.00000313,0.000005,-0.626847549,0.531220532,neg,ns,0.001884686,0.001463577,1.287725474,0.198802012,pos,ns,0.701579226,-0.0000751,0.0000503,-1.491267388,0.136908159,neg,ns,0.930295715,Mafb,Mafb_Intergenic_upstream,2,160389825,160389874,160389873,160389874,50,-,AAAAGTAATAGTCCATTACATTACCTACTTCAGCAAGATTGTAATGAACG,Distal Intergenic,2,160363703,160367065,3363,2,Mafb-201,-22809,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,22,16658,ENSMUSG00000074622,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19537,cg03956556,0.00000137,0.00000256,0.53494954,0.59306825,gain,ns,-0.00000272,0.00000434,-0.626841536,0.531224469,neg,ns,0.00101301,0.001272223,0.796252128,0.42649484,pos,ns,0.370086219,-0.000115935,0.0000438,-2.649837907,0.008466075,neg,ns,0.939070187,Gm20696,Gm20696_Intron,6,99602676,99602725,99602676,99602677,50,+,CGCCTTCTGTGGAGTTCCATCTTCCGAGAACAGACTTGAAATAGACATAG,"Intron (Gm20696-201/Gm20696, intron 3 of 5)",6,99257484,99666797,409314,2,Gm20696-201,64072,Gm20696-201;Gm20696-203,Gm20696;Gm20696,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,5,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
498,cg08551414,-0.0000134,0.0000128,-1.04631758,0.29622957,loss,ns,-0.0000136,0.0000217,-0.626775931,0.531267422,neg,ns,-0.007868317,0.006371346,-1.234953575,0.217782972,neg,ns,0.66197608,-0.00014848,0.00021911,-0.677648894,0.498499771,neg,ns,0.61939151,Rbfox1,Rbfox1_Intron,16,6573023,6573072,6573023,6573024,50,-,CGTGAGTCCAGGCTTTAACAAACAATATTTTTAATTGAGATTTTATGTCC,"Intron (Rbfox1-205/Rbfox1, intron 3 of 11)",16,5885355,7353045,1467691,1,Rbfox1-205,687668,Rbfox1-205;Rbfox1-201,Rbfox1;Rbfox1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,35,268859,ENSMUSG00000008658,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27268,cg26578422,0.00000766,0.00000274,2.791282157,0.005575635,gain,ns,-0.00000292,0.00000466,-0.626595411,0.53138562,neg,ns,-0.001727552,0.001365839,-1.264828667,0.206882755,neg,ns,0.684275709,0.0000626,0.000047,1.33261393,0.183637201,pos,ns,0.923888997,Prrc2c,Prrc2c_Exon,1,162675629,162675678,162675629,162675630,50,+,CGCAGCCTGGGCCTGATTACCTCTGACTCCAGATAGTGATCCACAAGGAC,"Exon (Prrc2c-210/Prrc2c, exon 34 of 35)",1,162670725,162740525,69801,2,Prrc2c-202,64847,Prrc2c-202;Prrc2c-210;Prrc2c-212;Prrc2c-206;Prrc2c-209;Prrc2c-201,Prrc2c;Prrc2c;Prrc2c;Prrc2c;Prrc2c;Prrc2c,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,7,226562,ENSMUSG00000040225,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8077,cg24395509,0.0000236,0.00000976,2.420974266,0.016053045,gain,ns,-0.0000104,0.0000166,-0.626462915,0.531472383,neg,ns,-0.006841201,0.004859635,-1.407760268,0.160204027,neg,ns,0.79532657,0.000351543,0.000167122,2.103508348,0.036226846,pos,ns,0.434467039,Pax2,Pax2_Intergenic_upstream,19,44724228,44724277,44724276,44724277,50,+,GAGCAGCGGCGAATGGCACATTACAGATGTTTTACTGTCGCGGGCGCTCG,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-31768,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,19,44723992,44724314,323,*,323,27,0.616099071,0.905795596,0.083591331,1.06E-18,CpGisland,TRUE,U13,Hc-P
18460,cg08799473,-0.00000616,0.00000299,-2.057839578,0.040441386,loss,ns,0.00000319,0.00000508,0.62644569,0.531483663,pos,ns,0.000445806,0.001489568,0.299285451,0.764922804,pos,ns,0.116382392,-0.000100598,0.0000512,-1.963795897,0.050447179,neg,ns,0.930149811,Flrt2,Flrt2_Exon,12,95779033,95779082,95779081,95779082,50,+,CTGTAATGAGCGAAGCTTGACCTCAGTGCCTCTTGGGATCCCGGAGGGCG,"Exon (Flrt2-201/Flrt2, exon 2 of 2)",12,95692226,95785215,92990,1,Flrt2-201,86807,Flrt2-201;Flrt2-202,Flrt2;Flrt2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,399558,ENSMUSG00000047414,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19969,cg24777065,0.0000231,0.0000026,8.872208719,5.83E-17,gain,yes,0.00000277,0.00000442,0.626405954,0.531509685,pos,ns,0.004391773,0.001294701,3.39211367,0.000783517,pos,ns,3.1059517,-0.000106436,0.0000445,-2.39048469,0.017422801,neg,ns,0.073307682,Fbln5,Fbln5_fiveUTR,12,101818996,101819045,101819044,101819045,50,-,ACAATGCAAATGGGGCCTCAGTCTGGACACAGCTGGTTCAGATTACAGCG,Promoter (<=1kb),12,101746565,101819055,72491,2,Fbln5-201,10,Fbln5-201;Fbln5-203;Fbln5-202,Fbln5;Fbln5;Fbln5,0;0;-37,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,2,23876,ENSMUSG00000021186,conserved gene and region,12,101819014,101819339,326,*,326,26,0.650306749,0.771948998,0.079754601,1.69E-17,CpGisland,TRUE,U3,Pr-B
21,cg22623934,0.0000034,0.00000223,1.528321536,0.127452411,gain,ns,-0.00000237,0.00000378,-0.626383329,0.531524502,neg,ns,-0.001937722,0.001108598,-1.747903015,0.081470853,neg,ns,1.088997737,0.0000895,0.0000381,2.347245754,0.019541612,pos,ns,0.89236491,Patz1,Patz1_Exon,11,3306348,3306397,3306396,3306397,50,-,TATGGCAACAAAGGCAAGCGACCCCTTGCTCTGCACTTTGCTTCTCTGCG,"Exon (Patz1-207/Patz1, exon 5 of 6)",11,3289167,3309083,19917,1,Patz1-204,17181,Patz1-204;Patz1-207;Patz1-205;Patz1-201;Patz1-202;Patz1-206;Patz1-212,Patz1;Patz1;Patz1;Patz1;Patz1;Patz1;Patz1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,9,56218,ENSMUSG00000020453,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4863,cg06721070,-0.00000885,0.0000027,-3.279733865,0.001157334,loss,ns,-0.00000287,0.00000458,-0.626333629,0.531557051,neg,ns,0.001760063,0.001342627,1.310909786,0.190858503,pos,ns,0.719288487,-0.000112214,0.0000462,-2.430313572,0.01565295,neg,ns,0.936567129,Zbtb44,Zbtb44_Exon,9,31066844,31066893,31066844,31066845,50,+,CGGATTTACGAGTGCAAAACATGTGGCGCCATGTTCACCAACTCTGGAAA,"Exon (Zbtb44-206/Zbtb44, exon 4 of 5)",9,31030644,31070233,39590,1,Zbtb44-205,36200,Zbtb44-205;Zbtb44-201;Zbtb44-206;Zbtb44-202;Zbtb44-204,Zbtb44;Zbtb44;Zbtb44;Zbtb44;Zbtb44,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,15,235132,ENSMUSG00000047412,conserved gene and region,9,31066713,31066901,189,*,189,12,0.486772487,1.07641196,0.063492064,0.00000032,CpGisland,TRUE,U10,Tr-S
388,cg06352032,-0.0000368,0.00000628,-5.859930185,1.18E-08,loss,yes,-0.00000668,0.0000107,-0.626223049,0.531629474,neg,ns,-0.006356138,0.003124954,-2.033994012,0.042803329,neg,ns,1.368522448,0.0000859,0.000107467,0.799036985,0.424880734,pos,ns,0.910772299,Zfhx4,Zfhx4_Intron,3,5349896,5349945,5349944,5349945,50,-,ATTGCTTCTTGTGCTCCTTAACAAGCCAATCTTAATCAGTCTGGACCACG,"Intron (Zfhx4-203/Zfhx4, intron 4 of 10)",3,5218526,5413165,194640,1,Zfhx4-203,131370,Zfhx4-203;Zfhx4-201;Zfhx4-205,Zfhx4;Zfhx4;Zfhx4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,27,77,80892,ENSMUSG00000025255,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17789,cg07039010,-0.000000547,0.00000203,-0.269593166,0.78765262,loss,ns,0.00000216,0.00000344,0.626173722,0.531661781,pos,ns,0.001181508,0.001008944,1.171034661,0.242484184,pos,ns,0.615316583,-0.0000533,0.0000347,-1.53518824,0.125757552,neg,ns,0.953880976,Fto,Fto_Intron,8,91665588,91665637,91665636,91665637,50,+,TGATAATTAATTTCTCTACTATTGATGAATAATCCATTCAATAAAAACCG,"Intron (Fto-201/Fto, intron 8 of 8)",8,91313525,91668439,354915,1,Fto-201,352063,Fto-201;Fto-205,Fto;Fto,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,26,26383,ENSMUSG00000055932,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20042,cg05787200,-0.00000439,0.00000306,-1.431803827,0.15320742,loss,ns,0.00000326,0.0000052,0.625969988,0.531795231,pos,ns,-0.000612735,0.001524359,-0.401962392,0.687988695,neg,ns,0.162418698,0.0000102,0.0000524,0.193738995,0.84650714,pos,ns,0.938454014,Hdac8,Hdac8_Exon,X,102307692,102307741,102307692,102307693,50,-,CGGCAGCTTGGCGTGATTTCCAGCACATAATCAGGACCATATGCTGTGAA,"Exon (Hdac8-201/Hdac8, exon 10 of 11)",20,102284639,102505359,220721,2,Hdac8-201,197618,Hdac8-201,Hdac8,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,7,70315,ENSMUSG00000067567,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15131,cg26372964,-0.0000176,0.00000621,-2.83052881,0.004950619,loss,ns,0.0000066,0.0000106,0.625757373,0.531934516,pos,ns,-0.00223361,0.003092201,-0.722336829,0.47063196,neg,ns,0.327318583,-0.0000876,0.000106341,-0.82405601,0.410541287,neg,ns,0.813408756,Gm48470,Gm48470_Intergenic_downstream,13,79340595,79340644,79340595,79340596,50,-,CGGTGATGGGGGTTTTGTGCCATTGTCTAATCTGTCAGATTAGATGAGCA,Distal Intergenic,13,79441143,79441407,265,2,Gm48470-201,100812,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,20,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23152,cg11956761,0.0000413,0.00000553,7.456957921,8.94E-13,gain,yes,-0.00000588,0.0000094,-0.625634513,0.532015011,neg,ns,0.006820372,0.002753236,2.47722075,0.013773878,pos,ns,1.860943772,-0.000210008,0.0000947,-2.217994862,0.027279736,neg,ns,0.029466946,Plppr4,Plppr4_Exon,3,117360029,117360078,117360029,117360030,50,-,CGAAATAAAAGCAGGGCAGGAGGGTGACGCTGTCCTTGATCACTTTGCCC,Promoter (<=1kb),3,117319139,117360876,41738,2,Plppr4-201,798,Plppr4-201;Plppr4-202;Plppr4-203,Plppr4;Plppr4;Plppr4,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,229791,ENSMUSG00000044667,conserved gene and region,3,117359933,117360352,420,*,420,39,0.65952381,0.875,0.092857143,1.33E-28,CpGisland,TRUE,U3,Pr-B
515,cg27153217,-0.00000249,0.00000567,-0.438587459,0.661265982,loss,ns,0.00000603,0.00000963,0.625582007,0.532049414,pos,ns,-0.004667249,0.002821845,-1.653970697,0.099145641,neg,ns,1.003726376,0.000206342,0.000097,2.126296142,0.034268475,pos,ns,0.805434878,St18,St18_fiveUTR,1,6730026,6730075,6730026,6730027,50,-,CGCATGAGGCTGTTGATGTGCAAATGTGAATCATATTGAGAAGGTCTGAA,Promoter (<=1kb),1,6730051,6860940,130890,1,St18-201,0,St18-208;St18-204;St18-201;St18-206;St18-203;St18-210;St18-212;St18-207,St18;St18;St18;St18;St18;St18;St18;St18,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,20,240690,ENSMUSG00000033740,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20423,cg16124830,0.0000657,0.0000052,12.63881376,8.14E-30,gain,yes,-0.00000552,0.00000883,-0.625509517,0.532096912,neg,ns,0.002184854,0.002586008,0.844875151,0.398832123,pos,ns,0.39920987,0.00012442,0.0000889,1.399040185,0.162800663,pos,ns,0.097495647,Hoxc4,Hoxc4_Exon,15,103034897,103034946,103034897,103034898,50,+,CGCCCTAGCTACCCTGAGCGCCAGTATAGCTGCACCAGTCTCCAGGGGCC,"Exon (Hoxc4-202/Hoxc4, exon 2 of 4)",15,103018934,103036405,17472,1,Hoxc4-202,15963,Hoxc4-202;Hoxc4-201,Hoxc4;Hoxc4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,91,15423,ENSMUSG00000075394,conserved gene and region,15,103034736,103035107,372,*,372,27,0.626344086,0.794494542,0.072580645,4.60E-17,CpGisland,TRUE,NA,NRS
20432,cg24022679,0.0000127,0.00000706,1.806045419,0.071881056,gain,ns,0.0000075,0.000012,0.625488574,0.532110635,pos,ns,-0.000587159,0.003512731,-0.167151812,0.867359581,neg,ns,0.06180082,0.0000985,0.000120803,0.815289538,0.41553253,pos,ns,0.110162256,Hoxc4,Hoxc4_Intron,15,103035374,103035423,103035422,103035423,50,+,GCTACGATCTGTTATGTATGTGTGAAAACTATGCTCGCTTTCTAAGGGCG,"Intron (Hoxc4-202/Hoxc4, intron 3 of 3)",15,103018934,103036405,17472,1,Hoxc4-202,16440,Hoxc4-202;Hoxc4-201,Hoxc4;Hoxc4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,91,15423,ENSMUSG00000075394,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
25373,cg20536006,0.0000172,0.00000448,3.833248233,0.000153145,gain,ns,-0.00000476,0.00000761,-0.625468057,0.532124079,neg,ns,-0.001997776,0.00223085,-0.895522265,0.371202791,neg,ns,0.430388767,0.0000232,0.0000767,0.302295907,0.762629218,pos,ns,0.856934507,Cacna1s,Cacna1s_Exon,1,136104569,136104618,136104617,136104618,50,-,GACTTTCCTGGCCTCCAGCGGGGGACTGTATTGCCTGGGTGGAGGCTGCG,"Exon (Cacna1s-204/Cacna1s, exon 29 of 44)",1,136052750,136119530,66781,1,Cacna1s-204,51819,Cacna1s-204;Cacna1s-202;Cacna1s-201;Cacna1s-206;Cacna1s-205,Cacna1s;Cacna1s;Cacna1s;Cacna1s;Cacna1s,0;0;0;0;-788,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,12292,ENSMUSG00000026407,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6787,cg07558872,-0.000000699,0.00000173,-0.405145915,0.6856497,loss,ns,0.00000183,0.00000293,0.625329264,0.53221503,pos,ns,0.000334193,0.000858603,0.389228629,0.69737426,pos,ns,0.156534086,0.00000406,0.0000295,0.137625178,0.890626001,pos,ns,0.054130158,Azin1,Azin1_fiveUTR,15,38518954,38519003,38518954,38518955,50,+,CGGCGGAATTTTTAAAGAGGGATGTGGTTACCTTGAGCAGAAATACCCAA,Promoter (<=1kb),15,38487427,38519266,31840,2,Azin1-201,263,Azin1-201;Azin1-203;Azin1-205;Azin1-207;Azin1-204;Azin1-208,Azin1;Azin1;Azin1;Azin1;Azin1;Azin1,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,9,54375,ENSMUSG00000037458,conserved gene and region,15,38518240,38518958,719,*,719,80,0.724617524,0.863663664,0.111265647,7.73E-65,CpGisland,TRUE,U1,Pr-A
4317,cg10766175,-0.0000488,0.0000122,-3.998562109,0.0000797,loss,ns,0.000013,0.0000207,0.625247509,0.532268607,pos,ns,-0.017969631,0.006070236,-2.96028527,0.003310681,neg,ns,2.480082675,0.000292053,0.000208755,1.399022345,0.162806007,pos,ns,0.593872775,Opcml,Opcml_Intron,9,28336946,28336995,28336994,28336995,50,-,GCAGCAGTAAGGAAAGTGCTTTAACCACAAGGCTGGTGTCCTGATGAACG,"Intron (Opcml-202/Opcml, intron 1 of 7)",9,27790947,28925410,1134464,1,Opcml-202,545999,Opcml-202,Opcml,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,12,330908,ENSMUSG00000062257,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
175,cg17833741,-0.000000745,0.000000393,-1.898856345,0.058511693,loss,ns,0.000000417,0.000000667,0.625226959,0.532282075,pos,ns,0.000294644,0.000195396,1.507937656,0.132588898,pos,ns,0.877492838,-0.0000126,0.00000672,-1.878000338,0.061319681,neg,ns,0.010177591,Tfap4,Tfap4_Promoter,16,4559140,4559189,4559188,4559189,50,+,GGGACTGCTGCAGAACCACGTGGGTCTGTTTGCAATTTACAAACGTCGCG,Promoter (<=1kb),16,4544661,4559854,15194,2,Tfap4-201,665,Tfap4-201;Tfap4-203,Tfap4;Tfap4,0;-357,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,3,9,83383,ENSMUSG00000005718,conserved gene and region,16,4558598,4559381,784,*,784,66,0.640306122,0.823529412,0.084183674,4.79E-45,CpGisland,TRUE,U1,Pr-A
26908,cg08060524,-0.0000291,0.00000968,-3.004831201,0.00287411,loss,ns,0.0000103,0.0000165,0.6251132,0.532356631,pos,ns,0.006203792,0.004819472,1.287234732,0.198972737,pos,ns,0.701206425,-0.00043127,0.000165741,-2.602065097,0.009711376,neg,ns,0.576587674,Tyw3,Tyw3_Intergenic_downstream,3,154565653,154565702,154565701,154565702,50,-,CCATTTATAGCTGATTGCTAACCCGAGCCTCATTTCTAATCTAAAGGGCG,Distal Intergenic,3,154579845,154594534,14690,2,Tyw3-203,28881,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,3,209584,ENSMUSG00000047583,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24926,cg14621438,0.000000429,0.00000279,0.153726489,0.877925421,gain,ns,-0.00000296,0.00000474,-0.624895117,0.532499576,neg,ns,0.010204587,0.001389034,7.346533234,1.81E-12,pos,yes,11.74168928,-0.000346454,0.0000478,-7.252723904,3.29E-12,neg,yes,0.951290927,Stk35,Stk35_Exon,2,129810899,129810948,129810899,129810900,50,+,CGGACATCTTTGCCCTGGGCATTATCATCTGGGCAATGATAGAAAGAATC,"Exon (Stk35-201/Stk35, exon 3 of 4)",2,129800517,129828974,28458,1,Stk35-201,10382,Stk35-201;Stk35-202,Stk35;Stk35,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,67333,ENSMUSG00000037885,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11755,cg07094321,0.0000381,0.00000577,6.603195145,1.75E-10,gain,yes,-0.00000613,0.00000981,-0.624787222,0.532570304,neg,ns,0.009275116,0.002873422,3.227898542,0.00138056,pos,ns,2.859944849,-0.000233845,0.0000988,-2.366452049,0.018574025,neg,ns,0.153308853,Cdh23,Cdh23_Intron,10,60457036,60457085,60457036,60457037,50,-,CGGTGGGGAAATTGGAAGAGATTTTGTTCTGTTTAAGCACAGCTGGAGTC,"Intron (Cdh23-201/Cdh23, intron 12 of 66)",10,60302748,60657333,354586,2,Cdh23-201,200248,Cdh23-201;Cdh23-203;Cdh23-202;Cdh23-204;Cdh23-205;Cdh23-209;Cdh23-210,Cdh23;Cdh23;Cdh23;Cdh23;Cdh23;Cdh23;Cdh23,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,14,22295,ENSMUSG00000012819,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18329,cg25875743,-0.000000935,0.00000589,-0.158926537,0.87383024,loss,ns,-0.00000625,0.00001,-0.624596654,0.532695237,neg,ns,-0.003496228,0.002929213,-1.193572586,0.233557805,neg,ns,0.631605615,-0.0000216,0.000100735,-0.214777051,0.830082365,neg,ns,0.793017831,Plxnc1,Plxnc1_Intron,10,94808495,94808544,94808495,94808496,50,+,CGGGAAGTGACTACAGGCCGGATTAATTTCATTATCATCCTTAAGCAGAT,"Intron (Plxnc1-201/Plxnc1, intron 23 of 30)",10,94790866,94944835,153970,2,Plxnc1-201,136291,Plxnc1-201,Plxnc1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,5,54712,ENSMUSG00000074785,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16137,cg02740381,0.0000106,0.00000347,3.050839922,0.002479191,gain,ns,-0.00000368,0.0000059,-0.62448874,0.532765991,neg,ns,0.000973009,0.001728499,0.562921544,0.573895195,pos,ns,0.241167412,0.0000159,0.0000594,0.26699656,0.789649337,pos,ns,0.919600414,Lin52,Lin52_Intron,12,84483172,84483221,84483220,84483221,50,+,ATTTCCCCAACTTTTTCATTATCTGCAATTTCTTTATGACTTGTGAATCG,"Intron (Lin52-201/Lin52, intron 5 of 5)",12,84451422,84531573,80152,1,Lin52-201,31750,Lin52-201;Lin52-202;Lin52-203,Lin52;Lin52;Lin52,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,6,217708,ENSMUSG00000085793,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3590,cg04910541,0.0000429,0.00000674,6.3635975,7.08E-10,gain,yes,-0.00000715,0.0000114,-0.624270387,0.532909169,neg,ns,-0.003709632,0.003354405,-1.105898641,0.269627888,neg,ns,0.569235191,0.000388626,0.000115358,3.368880333,0.000850056,pos,ns,0.807021127,Klhl32,Klhl32_Intron,4,24631354,24631403,24631354,24631355,50,-,CGCTGCAAAGGCAAAGAAACAGAGAGGCCTGGTGGGGTCATTCCTAATAA,"Intron (Klhl32-203/Klhl32, intron 5 of 7)",4,24612554,24800890,188337,2,Klhl32-203,169487,Klhl32-203;Klhl32-204;Klhl32-207;Klhl32-205;Klhl32-201,Klhl32;Klhl32;Klhl32;Klhl32;Klhl32,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,10,212390,ENSMUSG00000040387,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5215,cg04796289,-0.000000705,0.00000157,-0.45027138,0.652829499,loss,ns,0.00000166,0.00000266,0.62380758,0.533212703,pos,ns,0.000459036,0.000779734,0.588708514,0.556485527,pos,ns,0.254546126,-0.0000098,0.0000268,-0.365473239,0.715007422,neg,ns,0.953159388,Depdc5,Depdc5_threeUTR,5,32893384,32893433,32893384,32893385,50,+,CGTTCTACGTCGGCTATGGTTTACATATTTATTCAGATGAGCTGTGAAAT,3' UTR,5,32863706,32895934,32229,1,Depdc5-203,29678,Depdc5-203;Depdc5-201;Depdc5-202;Depdc5-204;Depdc5-211;Depdc5-216;Depdc5-217;Depdc5-205,Depdc5;Depdc5;Depdc5;Depdc5;Depdc5;Depdc5;Depdc5;Depdc5,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,7,277854,ENSMUSG00000037426,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2777,cg25966893,0.0000377,0.00000276,13.65171591,1.51E-33,gain,yes,0.00000293,0.00000469,0.623789216,0.533224749,pos,ns,0.003119454,0.001374783,2.269052642,0.023952142,pos,ns,1.620655635,0.0000703,0.0000473,1.486349833,0.138202913,pos,ns,0.044419358,Prdm13,Prdm13_Promoter,4,21689564,21689613,21689564,21689565,50,-,CGATTTTCCTTGCTGTTGGGCACATTTAGGAGCTCCTCTATTTGTGAAGT,Promoter (3-4kb),4,21677480,21685963,8484,2,Prdm13-205,-3650,Prdm13-205;Prdm13-201;Prdm13-202;Prdm13-203;Prdm13-206;Prdm13-204,Prdm13;Prdm13;Prdm13;Prdm13;Prdm13;Prdm13,0;0;0;0;0;-3719,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,19,23,230025,ENSMUSG00000040478,conserved gene and region,4,21689522,21689597,76,*,76,8,0.605263158,1.158095238,0.105263158,0.00000148,CpGisland,TRUE,NA,NRS
16136,cg18120532,-0.00000139,0.00000146,-0.946809345,0.344473373,loss,ns,0.00000155,0.00000249,0.623781166,0.53323003,pos,ns,0.000999468,0.000728574,1.371815118,0.171112964,pos,ns,0.766717086,-0.0000389,0.0000251,-1.551839033,0.121721024,neg,ns,0.958369176,Aatf,Aatf_Intron,11,84482133,84482182,84482181,84482182,50,-,AACTTCTTCAACAAAGAATTGCGTGAAGGCTCCACTGTATCATAATTCCG,"Intron (Aatf-201/Aatf, intron 5 of 12)",11,84422855,84513522,90668,2,Aatf-201,31340,Aatf-201;Aatf-202;Aatf-204,Aatf;Aatf;Aatf,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,10,56321,ENSMUSG00000018697,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22707,cg01220800,0.0000132,0.00000667,1.977725109,0.048845097,gain,ns,-0.00000706,0.0000113,-0.623519233,0.533401861,neg,ns,0.00350327,0.003318599,1.05564731,0.291951381,pos,ns,0.534689467,-0.000228001,0.000114126,-1.997796351,0.046612212,neg,ns,0.847690562,Sox6,Sox6_Exon,7,115777063,115777112,115777111,115777112,50,+,TCCGAGTCATTTCCTCAAGCTTCTTCTGTTTCAGTGTGTCCACCACATCG,"Exon (Sox6-210/Sox6, exon 4 of 16)",7,115470872,116031047,560176,2,Sox6-210,253935,Sox6-210;Sox6-201;Sox6-202;Sox6-204;Sox6-205;Sox6-203;Sox6-212;Sox6-206;Sox6-209;Sox6-214;Sox6-211,Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,57,20679,ENSMUSG00000051910,conserved gene and region,7,115777065,115777219,155,*,155,11,0.529032258,1.044730392,0.070967742,0.000000389,CpGisland,TRUE,NA,NRS
5763,cg16468976,0.00000938,0.00000336,2.790359012,0.005591162,gain,ns,0.00000356,0.00000571,0.623502532,0.533412818,pos,ns,0.00470519,0.001673605,2.81140954,0.005246679,pos,ns,2.280115482,-0.000108273,0.0000576,-1.881199593,0.060881798,neg,ns,0.038285,Sox2,Sox2_Intron,3,34661964,34662013,34661964,34661965,50,-,CGAGTTAATATGATCTTTATGGCAACATAACAGTGGATAATTGGCCTTTT,"Intron (Sox2ot-203/Sox2ot-203, intron 3 of 3)",3,34650405,34652461,2057,1,Sox2-201,11608,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,34,62,20674,ENSMUSG00000074637,mapped to different genes,3,34661791,34661965,175,*,175,12,0.525714286,0.992438563,0.068571429,0.000000139,CpGisland,TRUE,U13,Hc-P
14789,cg08693605,-0.00000376,0.00000112,-3.359194794,0.00087932,loss,ns,-0.00000118,0.0000019,-0.623333534,0.533523699,neg,ns,-0.001085813,0.000556695,-1.950461146,0.052022117,neg,ns,1.283811981,-0.00000143,0.0000191,-0.074842066,0.940388644,neg,ns,0.033249397,Nufip2,Nufip2_Promoter,11,77685953,77686002,77686001,77686002,50,+,GAAGGCCCGGCCCTGTGAGGTTGCACAGGGTAAGTGGCGTTGGCCAGGCG,Promoter (<=1kb),11,77686155,77712741,26587,1,Nufip2-201,-153,Nufip2-201;Nufip2-204;Nufip2-202;Nufip2-203,Nufip2;Nufip2;Nufip2;Nufip2,0;0;-1457;-1599,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,10,68564,ENSMUSG00000037857,conserved gene and region,11,77685817,77686243,427,*,427,32,0.597189696,0.870096791,0.074941452,1.51E-20,CpGisland,TRUE,U1,Pr-A
17841,cg03917360,-0.0000319,0.000012,-2.667206698,0.008050174,loss,ns,0.0000127,0.0000203,0.623221796,0.533597018,pos,ns,0.000547357,0.005960142,0.091836187,0.926887509,pos,ns,0.032972971,0.0000336,0.000204969,0.163773531,0.870016151,pos,ns,0.659225299,Irx3,Irx3_Intron,8,92026859,92026908,92026859,92026860,50,+,CGATTAGAGACAAAAAGTTAATTATGTAATTATAAAGCCAATAACAGACT,"Intron (Gm28516-201/Gm28516-201, intron 1 of 3)",8,91798525,91802067,3543,2,Irx3-202,-224792,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,36,16373,ENSMUSG00000031734,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3135,cg01197044,-0.0000453,0.00000934,-4.843613961,0.00000202,loss,ns,0.00000989,0.0000159,0.62318468,0.533621374,pos,ns,-0.008710447,0.004650667,-1.872945767,0.062016841,neg,ns,1.207490358,-0.0000148,0.000159936,-0.092794946,0.926126407,neg,ns,0.471680354,Gm11879,Gm11879_Intergenic_downstream,4,22946924,22946973,22946924,22946925,50,+,CGTGTTTAGAAATGATTAAGTACTGCAGCCTAGAAAGGACCTGTCCTGAG,Distal Intergenic,4,22704057,22704758,702,1,Gm11879-201,242867,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,19,19,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6846,cg01235968,0.0000272,0.00000289,9.383923923,1.41E-18,gain,yes,-0.00000306,0.00000492,-0.623046647,0.533711956,neg,ns,0.001984401,0.001440484,1.377593384,0.169322579,pos,ns,0.771285126,0.0000332,0.0000495,0.669833124,0.503462796,pos,ns,0.060485248,Etv1,Etv1_fiveUTR,12,38780228,38780277,38780228,38780229,50,+,CGCGGAGCCAATGGGAGGCAGCGATCCATCAGTTTGGATTGGAGGCCCCT,Promoter (<=1kb),12,38779380,38866249,86870,1,Etv1-203,848,Etv1-203;Etv1-201;Etv1-211;Etv1-207;Etv1-206;Etv1-205;Etv1-212;Etv1-208;Etv1-210;Etv1-204;Etv1-202,Etv1;Etv1;Etv1;Etv1;Etv1;Etv1;Etv1;Etv1;Etv1;Etv1;Etv1,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,8,10,14009,ENSMUSG00000004151,conserved gene and region,12,38779860,38780250,391,*,391,18,0.529411765,0.678688525,0.046035806,2.36E-08,CpGisland,TRUE,U2,Pr-W
20496,cg15791636,-0.00000384,0.00000131,-2.932508689,0.003612798,loss,ns,-0.00000139,0.00000222,-0.622953084,0.533773359,neg,ns,-0.000689849,0.000651487,-1.058884924,0.290476557,neg,ns,0.536888912,-0.0000342,0.0000224,-1.525530327,0.128146428,neg,ns,0.017335266,Hexim2,Hexim2_Promoter,11,103132780,103132829,103132780,103132781,50,+,CGCCCGGACCACCCCCCACGGGGTGCTCTCACTGCGCAGCGAGTCCCTCC,Promoter (<=1kb),11,103132429,103138498,6070,1,Hexim2-205,351,Hexim2-205;Hexim2-202;Hexim2-203;Hexim2-201;Hexim2-204,Hexim2;Hexim2;Hexim2;Hexim2;Hexim2,0;-485;-510;-516;-1036,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,2,2,71059,ENSMUSG00000043372,conserved gene but different region,11,103132255,103133111,857,*,857,74,0.66277713,0.789104981,0.086347725,2.91E-51,CpGisland,TRUE,U1,Pr-A
19995,cg15871570,-0.0000548,0.0000105,-5.225271455,0.00000032,loss,yes,-0.0000111,0.0000178,-0.622915976,0.533797713,neg,ns,-0.016126581,0.005220334,-3.089185653,0.002188853,neg,ns,2.659783444,0.000211018,0.000179527,1.175413765,0.240731186,pos,ns,0.755301536,Il18bp,Il18bp_Exon,7,102016299,102016348,102016299,102016300,50,+,CGGCCTGGGAGGTGCTCAATGAAGGAACCATTGCCCAGCCAGTAGAGGAT,"Exon (Il18bp-203/Il18bp, exon 5 of 7)",7,102014885,102018155,3271,2,Il18bp-203,1807,Il18bp-203;Il18bp-201;Il18bp-202;Il18bp-204;Numa1-201;Numa1-202;Rnf121-202;Rnf121-201;Rnf121-203;Rnf121-206,Il18bp;Il18bp;Il18bp;Il18bp;Numa1;Numa1;Rnf121;Rnf121;Rnf121;Rnf121,0;0;0;0;0;0;48810;49121;44128;8121,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,16068,ENSMUSG00000070427,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18353,cg06242145,0.0000274,0.00000491,5.570931597,0.000000055,gain,yes,-0.0000052,0.00000834,-0.622815711,0.533863521,neg,ns,-0.003197749,0.002444067,-1.308372273,0.1917163,neg,ns,0.717340961,0.000101009,0.0000841,1.201758558,0.230374341,pos,ns,0.050959757,Otp,Otp_Promoter,13,94869342,94869391,94869342,94869343,50,+,CGATCTTCTCTGTAGATTTCTCTAATTGAGTGAATATAGACGCCCGGAAT,Promoter (6-7kb),13,94875602,94885130,9529,1,Otp-201,-6211,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,27,34,18420,ENSMUSG00000021685,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22565,cg24047898,-0.0000254,0.00000515,-4.920749618,0.0000014,loss,yes,0.00000545,0.00000876,0.622585042,0.534014933,pos,ns,-0.005903095,0.002565047,-2.301358947,0.022034383,neg,ns,1.656899107,0.0000887,0.0000882,1.005043255,0.315659864,pos,ns,0.816289734,Rab37,Rab37_Exon,11,115156986,115157035,115156986,115156987,50,+,CGGGGCCTTCCTGTCCGGAACCTTCATAGCCACCGTCGGCATAGACTTCA,"Exon (Rab37-201/Rab37, exon 2 of 9)",11,115091431,115162236,70806,1,Rab37-202,65555,Rab37-202;Rab37-201;Rab37-204,Rab37;Rab37;Rab37,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,58222,ENSMUSG00000020732,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7131,cg03488026,-0.000000745,0.00000196,-0.37958134,0.704516108,loss,ns,-0.00000208,0.00000334,-0.62253589,0.534047199,neg,ns,0.000273181,0.000977496,0.2794707,0.780069988,pos,ns,0.107866431,0.0000118,0.0000336,0.350783482,0.725989046,pos,ns,0.939080934,Pcm1,Pcm1_Exon,8,41261387,41261436,41261387,41261388,50,-,CGGACTATAGATTCAGCTGTGGGATCTGGTTCTGTAGCTGAGAGCACATC,"Exon (Pcm1-203/Pcm1, exon 6 of 10)",8,41239752,41275094,35343,1,Pcm1-203,21635,Pcm1-203;Pcm1-202;Pcm1-201;Pcm1-204,Pcm1;Pcm1;Pcm1;Pcm1,0;21622;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,18536,ENSMUSG00000031592,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4739,cg11120353,0.0000077,0.00000577,1.333910689,0.183212277,gain,ns,0.0000061,0.0000098,0.622423802,0.534120784,pos,ns,0.005509745,0.002871272,1.918921275,0.055912312,pos,ns,1.252492546,0.0000369,0.0000987,0.374198006,0.708512825,pos,ns,0.094849664,Cacna1d,Cacna1d_fiveUTR,14,30352947,30352996,30352995,30352996,50,+,CTGCCGTTGATGCTGCATTTTTTTCATCATCATCATCATCATCATCCACG,Promoter (<=1kb),14,30042073,30352991,310919,2,Cacna1d-204,0,Cacna1d-202;Cacna1d-201;Cacna1d-208;Cacna1d-209;Cacna1d-214;Cacna1d-204;Cacna1d-207;Cacna1d-218;Cacna1d-216;Cacna1d-205,Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,26,12289,ENSMUSG00000015968,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
24038,cg18800235,0.0000065,0.00000486,1.335401139,0.182724788,gain,ns,-0.00000514,0.00000826,-0.622392371,0.534141419,neg,ns,-0.001341542,0.002421109,-0.554102331,0.579908294,neg,ns,0.23664068,-0.0000254,0.0000833,-0.304565365,0.760901561,neg,ns,0.940922438,Abca4,Abca4_Exon,3,122147799,122147848,122147799,122147800,50,-,CGGGCCAGCCTGCCTAAGGACAGGAGCCCCGAGGAGTATGGAATCACCGT,"Exon (Abca4-201/Abca4, exon 35 of 50)",3,122044443,122180059,135617,1,Abca4-201,103356,Abca4-201;Abca4-207;Gm43157-201;Gm43158-201,Abca4;Abca4;Gm43157;Gm43158,0;0;4771;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,11304,ENSMUSG00000028125,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25047,cg20288552,0.0000461,0.00000683,6.756163673,7.02E-11,gain,yes,0.00000722,0.0000116,0.622281342,0.534214316,pos,ns,0.001680342,0.003397246,0.494618962,0.621219459,pos,ns,0.206754949,0.000173272,0.000116831,1.483096481,0.139064692,pos,ns,0.688899158,Ptpru,Ptpru_Exon,4,131820715,131820764,131820763,131820764,50,-,TCATTGGGCCAGAAAGTGCTGACAGCCAGCTCAGCCTGGTGCCACTGACG,"Exon (Ptpru-203/Ptpru, exon 3 of 30)",4,131768457,131838288,69832,2,Ptpru-203,17524,Ptpru-203;Ptpru-201;Ptpru-205;Ptpru-202,Ptpru;Ptpru;Ptpru;Ptpru,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,19273,ENSMUSG00000028909,conserved gene and region,4,131820763,131820825,63,*,63,7,0.682539683,0.98,0.111111111,0.0000065,CpGisland,TRUE,U11,Tr-P
3346,cg15934191,-0.0000115,0.00000809,-1.420630187,0.156429315,loss,ns,0.00000856,0.0000138,0.622223162,0.534252516,pos,ns,-0.00785595,0.004028694,-1.949999217,0.052077407,neg,ns,1.283350652,0.0000663,0.000138546,0.47887804,0.632362992,pos,ns,0.650248943,Gm11890,Gm11890_Intergenic_upstream,4,23787689,23787738,23787737,23787738,50,-,GACTCTTTTAACCAGGAATCCCAAGATGAAACGGAACCATTTTCCTCACG,Distal Intergenic,4,23659928,23660344,417,2,Gm11890-201,-127394,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,15,32,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12598,cg15439266,-0.000021,0.00000624,-3.360804156,0.000874393,loss,ns,0.00000659,0.0000106,0.621746391,0.53456561,pos,ns,-0.003132785,0.003103397,-1.009469788,0.313536651,neg,ns,0.503711685,-0.0000376,0.000106726,-0.351905623,0.725148133,neg,ns,0.886058314,Scn2a,Scn2a_threeUTR,2,65708952,65709001,65709000,65709001,50,+,CTTGCCATAGCAAAACCACTGAGAGGAAGCTGCCAGTGGTTCTGCTACCG,3' UTR,2,65620771,65767447,146677,1,Scn2a-201,88181,Scn2a-201;Scn2a-205;Scn2a-202;Scn2a-210,Scn2a;Scn2a;Scn2a;Scn2a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,5,110876,ENSMUSG00000075318,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14250,cg22306928,0.00000632,0.00000227,2.782073602,0.005732281,gain,ns,0.0000024,0.00000386,0.621637755,0.534636964,pos,ns,0.002783352,0.001130388,2.46229815,0.014348722,pos,ns,1.843186775,-0.0000643,0.0000389,-1.655171895,0.098901612,neg,ns,0.007947745,Cryba2,Cryba2_Exon,1,74900667,74900716,74900715,74900716,50,-,GAGCCGAACGAACAAAACGCTCAGGTCCGGTTTGTGCGAGGGGCTCGTCG,Promoter (7-8kb),1,74889934,74893143,3210,2,Cryba2-201,-7573,Cfap65-201,Cfap65,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,12958,ENSMUSG00000006546,mapped to different genes,1,74900515,74900984,470,*,470,50,0.708510638,0.848314201,0.106382979,1.14E-39,CpGisland,TRUE,U3,Pr-B
24113,cg16582309,0.0000425,0.00000984,4.316706093,0.0000213,gain,ns,0.0000104,0.0000167,0.621525098,0.534710964,pos,ns,-0.001052328,0.004898817,-0.214812637,0.830054643,neg,ns,0.080893317,0.000211246,0.00016847,1.25391,0.210819458,pos,ns,0.707598216,Prkcb,Prkcb_Exon,7,122627712,122627761,122627760,122627761,50,+,AACACCTCCCGACCAGGAAGTCATCAGGAATATTGACCAATCAGAATTCG,"Exon (Prkcb-205/Prkcb, exon 17 of 18)",7,122288751,122634399,345649,1,Prkcb-205,338961,Prkcb-205;Prkcb-202;Prkcb-201;Prkcb-203,Prkcb;Prkcb;Prkcb;Prkcb,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,7,18751,ENSMUSG00000052889,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18323,cg15794906,0.0000304,0.00000248,12.22259593,2.63E-28,gain,yes,-0.00000262,0.00000422,-0.621325963,0.534841781,neg,ns,0.002179251,0.001236442,1.762518599,0.078967112,pos,ns,1.102553742,-0.0000752,0.0000425,-1.767960564,0.078051089,neg,ns,0.07600119,Gm48316,Gm48316_Intergenic_upstream,13,94710276,94710325,94710324,94710325,50,+,AAACTGCAAATTATCCAGCAGCGGCCCTGTTCCCGTCTACCAGCAGCTCG,Distal Intergenic,13,94752270,94752593,324,1,Gm48316-201,-41945,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,36,42,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
17067,cg07693037,0.00000652,0.00000432,1.510698325,0.131883957,gain,ns,0.00000456,0.00000733,0.621153503,0.534955087,pos,ns,0.002566462,0.002148741,1.194402637,0.233233584,pos,ns,0.632208914,-0.0000137,0.0000739,-0.185820373,0.852707155,neg,ns,0.08305378,Gata2,Gata2_Promoter,6,88189731,88189780,88189731,88189732,50,-,CGCAGGTTGTGTGACTTTGGGTTTGACCTGCCTGGAGATGAGCTAATCCC,Promoter (4-5kb),6,88193891,88207032,13142,1,Gata2-202,-4160,Gata2-202,Gata2,0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,7,12,14461,ENSMUSG00000015053,mapped to different genes,6,88189555,88189732,178,*,178,24,0.758426966,0.937664618,0.134831461,5.25E-22,CpGisland,TRUE,U3,Pr-B
16696,cg18010885,0.0000221,0.00000812,2.722719379,0.006841307,gain,ns,0.00000857,0.0000138,0.621126022,0.534973143,pos,ns,0.007950088,0.004041747,1.966993211,0.050075577,pos,ns,1.300374038,-0.0000456,0.000138995,-0.328038804,0.743103772,neg,ns,0.035001627,Prkce,Prkce_fiveUTR,17,86168583,86168632,86168583,86168584,50,+,CGCCCCGACCATGGTAGTGTTCAATGGCCTTCTTAAGATCAAAATCTGCG,Promoter (<=1kb),17,86167785,86657919,490135,1,Prkce-202,798,Prkce-202;Prkce-204;Prkce-201,Prkce;Prkce;Prkce,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,7,18754,ENSMUSG00000045038,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
23444,cg00651667,-0.00000325,0.00000508,-0.638344095,0.523720998,loss,ns,-0.00000536,0.00000864,-0.621096099,0.534992804,neg,ns,-0.005686881,0.002530158,-2.247638291,0.025302094,neg,ns,1.596843539,0.0000639,0.000087,0.734288225,0.463328124,pos,ns,0.877473691,Eomes,Eomes_Exon,9,118484270,118484319,118484318,118484319,50,+,GTAGCATGTACACCGCTTCAGAAAATGACAGGTTAACTCCATCTCCCACG,"Exon (Eomes-201/Eomes, exon 6 of 6)",9,118478212,118485366,7155,1,Eomes-202,6058,Eomes-202;Eomes-201;Eomes-203,Eomes;Eomes;Eomes,0;0;5409,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,8,13813,ENSMUSG00000032446,conserved gene and region,9,118484282,118484551,270,*,270,14,0.555555556,0.704041721,0.051851852,0.000000295,CpGisland,TRUE,U13,Hc-P
14834,cg05182034,0.00000737,0.00000383,1.922502427,0.055458697,gain,ns,-0.00000404,0.00000651,-0.620979686,0.535069297,neg,ns,-0.004015497,0.001908273,-2.104257014,0.036161015,neg,ns,1.441759389,0.000129019,0.0000656,1.965990868,0.050191824,pos,ns,0.920142339,Pipox,Pipox_Intergenic_upstream,11,77909958,77910007,77909958,77909959,50,-,CGGATCAAACACAGTTTGTGAGATGCTTCAAATGTATTATTCATCTCACC,Distal Intergenic,11,77880615,77894096,13482,2,Pipox-201,-15911,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,6,19193,ENSMUSG00000017453,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2547,cg14792108,0.00000815,0.00000539,1.511965963,0.131561243,gain,ns,-0.00000569,0.00000916,-0.620909778,0.535115236,neg,ns,-0.000970801,0.002682775,-0.361864681,0.717699689,neg,ns,0.144057242,-0.0000203,0.0000923,-0.220215447,0.825848317,neg,ns,0.866855033,Jade3,Jade3_threeUTR,X,20494300,20494349,20494300,20494301,50,-,CGGTCTCCAGACAGTGAAGAAGGGAATGATATGGTGTTCTGTGATAAGTG,3' UTR,20,20425688,20519939,94252,1,Jade3-202,68612,Jade3-202;Jade3-204;Jade3-203;Jade3-201,Jade3;Jade3;Jade3;Jade3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,2,382207,ENSMUSG00000037315,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5921,cg18808388,-0.000041,0.0000108,-3.799460728,0.000174526,loss,ns,-0.0000114,0.0000183,-0.620646961,0.535287956,neg,ns,-0.011397323,0.005368374,-2.123049512,0.034541813,neg,ns,1.461654875,-0.0000393,0.000184618,-0.212964564,0.83149458,neg,ns,0.847837146,Gm7733,Gm7733_Intergenic_downstream,3,35254153,35254202,35254201,35254202,50,-,AGGTATTTTTGCTGTCACCAAAGACAGCTAATTTGGGAAGCCTAATCTCG,Distal Intergenic,3,35536882,35537800,919,2,Gm7733-201,283647,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,14,15,665655,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9651,cg22276147,-0.00000543,0.00000254,-2.135150189,0.033532464,loss,ns,0.00000268,0.00000432,0.620581858,0.535330746,pos,ns,-0.001544744,0.001264681,-1.221449614,0.222843909,neg,ns,0.651999232,0.00000351,0.0000435,0.080746275,0.935695839,pos,ns,0.946488128,Htatip2,Htatip2_Intergenic_upstream,7,49699248,49699297,49699248,49699249,50,-,CGGCTCATTACCCAGTGGCCTCCGTGACTAATTAGGTTTTGTCACTGTTG,Distal Intergenic,7,49759115,49762759,3645,1,Htatip2-203,-59867,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,7,53415,ENSMUSG00000039745,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2735,cg03528345,0.0000404,0.00000439,9.199316037,5.46E-18,gain,yes,0.00000463,0.00000746,0.62046161,0.535409784,pos,ns,0.009966562,0.002185953,4.559367115,0.00000739,pos,ns,5.131066242,-0.000176214,0.0000752,-2.344064127,0.0197061,neg,ns,0.082153632,Klhl14,Klhl14_Exon,18,21651735,21651784,21651783,21651784,50,+,CCAGGTACTTGTTGGCCAGCTTCTTGGTCTCCTCCAGGCCGTGCAGCGCG,Promoter (<=1kb),18,21550377,21652368,101992,2,Klhl14-201,584,Klhl14-201;Klhl14-202,Klhl14;Klhl14,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,38,225266,ENSMUSG00000042514,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
2704,cg15368664,0.0000589,0.0000133,4.439792269,0.0000125,gain,ns,-0.000014,0.0000225,-0.620348119,0.535484386,neg,ns,-0.007287652,0.006599594,-1.104257627,0.270337775,neg,ns,0.568093264,-0.0000392,0.00022696,-0.172512405,0.863147283,neg,ns,0.711252798,Gm4837,Gm4837_Intergenic_downstream,18,21477347,21477396,21477395,21477396,50,+,AGAATTTACATTCTTCTAATTTGCTGCTTTACTGCATCACTTAGTATCCG,Distal Intergenic,18,21492516,21494099,1584,2,Gm4837-201,16703,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,225264,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2641,cg16725457,-0.00000601,0.00000381,-1.576710472,0.115882056,loss,ns,0.00000402,0.00000648,0.619881971,0.535790861,pos,ns,-0.001590519,0.001898039,-0.837980243,0.402687418,neg,ns,0.39503194,0.0000747,0.0000653,1.144313241,0.253376536,pos,ns,0.917219605,Tmc1,Tmc1_Exon,19,20804600,20804649,20804648,20804649,50,+,AGATCATGCCTTGGTTGAAGATCAGAGCGAGGACGTTGCCACTGATGTCG,"Exon (Tmc1-204/Tmc1, exon 2 of 7)",19,20783458,20814667,31210,2,Tmc1-204,10018,Tmc1-204;Tmc1-201;Tmc1-203,Tmc1;Tmc1;Tmc1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,13409,ENSMUSG00000024749,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8230,cg06931807,-0.0000167,0.00000988,-1.686580289,0.09269011,loss,ns,0.0000104,0.0000168,0.619812879,0.535836293,pos,ns,0.001347237,0.004919811,0.273839117,0.784390629,pos,ns,0.105467603,-0.000212798,0.000169192,-1.257733348,0.209434809,neg,ns,0.769782028,Ebf1,Ebf1_Exon,11,44883816,44883865,44883816,44883817,50,+,CGTGGTGTCTACGACAGTCAATGTGGATGGCCATGTCCTGGCAGTCTCTG,"Exon (Ebf1-203/Ebf1, exon 8 of 16)",11,44617317,45004995,387679,1,Ebf1-203,266499,Ebf1-203;Ebf1-202;Ebf1-201,Ebf1;Ebf1;Ebf1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,15,80,13591,ENSMUSG00000057098,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13855,cg18425696,0.00000781,0.00000273,2.867240748,0.004424324,gain,ns,0.00000287,0.00000463,0.619719614,0.535897625,pos,ns,0.004343987,0.001356497,3.202357344,0.001504657,pos,ns,2.822562386,-0.000135746,0.0000466,-2.909901933,0.003877058,neg,ns,0.059491728,Six4,Six4_Exon,12,73112766,73112815,73112814,73112815,50,-,CTCTCGTTGCCACGTAGCAGGTCGCTCTGGGGCAGGGACCACAGGAACCG,Promoter (<=1kb),12,73099609,73113425,13817,2,Six4-201,610,Six4-201;Six4-202,Six4;Six4,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,8,20474,ENSMUSG00000034460,conserved gene and region,12,73112743,73113164,422,*,422,41,0.699052133,0.801018519,0.097156398,6.89E-31,CpGisland,TRUE,U3,Pr-B
24960,cg08088427,-0.00000108,0.00000414,-0.260934799,0.794316044,loss,ns,-0.00000436,0.00000703,-0.619506067,0.536038067,neg,ns,0.004638661,0.002060007,2.251769386,0.025036636,pos,ns,1.601424032,-0.0000849,0.0000708,-1.197963723,0.231846249,neg,ns,0.878503754,Fgfr2,Fgfr2_Exon,7,130242501,130242550,130242549,130242550,50,-,TCCTATTGTTGGGCCCCAAGTGCACCCCATCCTTAGTCCAACTGATCACG,"Exon (Fgfr2-226/Fgfr2, exon 3 of 17)",7,130162451,130266263,103813,2,Fgfr2-211,23713,Fgfr2-211;Fgfr2-217;Fgfr2-207;Fgfr2-226;Fgfr2-215;Fgfr2-201;Fgfr2-202;Fgfr2-203;Fgfr2-204;Fgfr2-205;Fgfr2-206;Fgfr2-208;Fgfr2-209;Fgfr2-210;Fgfr2-212;Fgfr2-213;Fgfr2-214;Fgfr2-216;Fgfr2-219,Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,79,14183,ENSMUSG00000030849,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12,cg19891210,0.00000211,0.00000251,0.841373358,0.400787357,gain,ns,-0.00000264,0.00000427,-0.619496956,0.53604406,neg,ns,-0.00128905,0.001250449,-1.03086951,0.303405614,neg,ns,0.517976388,-0.0000126,0.000043,-0.293421975,0.769395965,neg,ns,0.872589849,Crem,Crem_threeUTR,18,3268061,3268110,3268109,3268110,50,-,ACAGCCACACGATTTTCAAGACATTTGACATATTCTTTCTTCTTCCTGCG,3' UTR,18,3266048,3327591,61544,2,Crem-230,59481,Crem-230;Crem-228;Crem-204;Crem-233;Crem-201;Crem-203;Crem-239;Crem-219;Crem-220;Crem-234;Crem-209;Crem-229;Crem-213;Crem-212;Crem-206;Crem-202;Crem-208;Crem-224;Crem-237;Crem-211;Crem-217;Crem-223;Crem-232;Crem-215;Crem-216;Crem-231;Crem-222;Crem-205;Crem-218;Crem-225;Crem-235;Crem-207;Crem-236,Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem;Crem,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,4,12916,ENSMUSG00000063889,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4036,cg06219314,-0.0000747,0.0000124,-6.026632378,4.75E-09,loss,yes,0.000013,0.0000211,0.619477957,0.536056556,pos,ns,-0.012261155,0.006167795,-1.98793158,0.047698622,neg,ns,1.321494169,0.000115358,0.00021211,0.543857774,0.586930262,pos,ns,0.83243223,Gm45647,Gm45647_Intergenic_upstream,8,26622625,26622674,26622625,26622626,50,-,CGTGACCACTTACATGTCTTTCCTGAGTGTTTTTATATAGCGTAGGAAAT,Distal Intergenic,8,26780315,26780509,195,1,Gm45647-201,-157690,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,46,62,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27367,cg04016899,0.000000429,0.00000254,0.168910707,0.865977036,gain,ns,-0.00000267,0.00000432,-0.619456733,0.536070515,neg,ns,0.000372939,0.001264672,0.294889988,0.768275309,pos,ns,0.114483124,-0.0000818,0.0000435,-1.881004366,0.060908444,neg,ns,0.932702225,Zmynd8,Zmynd8_Exon,2,165807513,165807562,165807513,165807514,50,+,CGGTACCTTTCACAGCCTGTCTGGTCTGATATCTCGTCCCCTGGGAAGAC,"Exon (Zmynd8-203/Zmynd8, exon 15 of 23)",2,165784152,165858173,74022,2,Zmynd8-205,50611,Zmynd8-205;Zmynd8-221;Zmynd8-203;Zmynd8-220;Zmynd8-201;Zmynd8-206;Zmynd8-218;Zmynd8-202,Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,12,228880,ENSMUSG00000039671,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27545,cg13741644,-0.0000548,0.0000198,-2.76708425,0.005995811,loss,ns,0.0000209,0.0000337,0.619357779,0.536135602,pos,ns,0.030850535,0.009865539,3.127100805,0.001932869,pos,ns,2.713797658,-0.001063027,0.000339275,-3.1332301,0.00189418,neg,ns,0.531089452,Tshz2,Tshz2_Intron,2,169666571,169666620,169666619,169666620,50,+,CAAAATGTCTCCGGGTAATGGCTGTGAAGAGTTCATGACTGACTGATCCG,"Intron (Tshz2-202/Tshz2, intron 1 of 2)",2,169633013,169913093,280081,1,Tshz2-202,33558,Tshz2-202;Tshz2-201,Tshz2;Tshz2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,21,30,228911,ENSMUSG00000047907,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1584,cg09364634,-0.0000234,0.00000639,-3.667047102,0.000288656,loss,ns,-0.00000672,0.0000109,-0.619311213,0.536166233,neg,ns,0.001945327,0.003179878,0.611761652,0.541143856,pos,ns,0.266687268,-0.000181908,0.000109356,-1.663453135,0.097232324,neg,ns,0.895219107,Zfp521,Zfp521_Intron,18,13798207,13798256,13798207,13798208,50,+,CGTGTGAGTCTTTTTATGGCTCCATTTATGTCAATGTCCTAGTGTCATCT,"Intron (Zfp521-201/Zfp521, intron 5 of 7)",18,13687013,13972787,285775,2,Zfp521-201,174531,Zfp521-201;Zfp521-205;Zfp521-204,Zfp521;Zfp521;Zfp521,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,81,225207,ENSMUSG00000024420,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11412,cg20861285,-0.0000291,0.00000676,-4.305664407,0.0000224,loss,ns,-0.00000711,0.0000115,-0.618976531,0.536386406,neg,ns,0.000542787,0.003366388,0.161237167,0.872011637,pos,ns,0.059477719,-0.0000347,0.00011577,-0.299844769,0.764496517,neg,ns,0.866349017,Larp1,Larp1_Exon,11,58042561,58042610,58042609,58042610,50,+,GCTGGTGGGGCGCGGGCTTCCTTCCGTGGCCGTGGACGGGGGCGTGGTCG,"Exon (Larp1-201/Larp1, exon 6 of 19)",11,58009064,58062031,52968,1,Larp1-201,33497,Larp1-201;Larp1-203;Larp1-202,Larp1;Larp1;Larp1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,6,73158,ENSMUSG00000037331,conserved gene but different region,11,58042524,58042798,275,*,275,19,0.610909091,0.780433159,0.069090909,8.76E-12,CpGisland,TRUE,U10,Tr-S
25069,cg19646671,-0.00000281,0.00000245,-1.146442203,0.252496362,loss,ns,-0.00000257,0.00000416,-0.61881551,0.536492351,neg,ns,-0.000603331,0.001218998,-0.494940092,0.620993015,neg,ns,0.206913285,0.000083,0.0000419,1.980817726,0.048495279,pos,ns,0.957131034,Tmcc2,Tmcc2_Exon,1,132380760,132380809,132380808,132380809,50,-,TGGTGCTGGTGCAGGATGGCGGCCAGGCTGCTGTCCTGGGGGGCCTTGCG,"Exon (Tmcc2-201/Tmcc2, exon 2 of 5)",1,132356315,132391281,34967,2,Tmcc2-201,10472,Tmcc2-201;Tmcc2-203,Tmcc2;Tmcc2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,68875,ENSMUSG00000042066,conserved gene and region,1,132380665,132381044,380,*,380,25,0.657894737,0.622379455,0.065789474,8.03E-15,CpGisland,TRUE,NA,NRS
24402,cg12041261,0.00000147,0.0000033,0.446611956,0.655467089,gain,ns,0.00000347,0.00000561,0.618770909,0.536521698,pos,ns,0.003084089,0.00164322,1.876857003,0.061476804,pos,ns,1.211288717,-0.0000864,0.0000565,-1.529537375,0.12715102,neg,ns,0.925394956,Vamp1,Vamp1_Exon,6,125219598,125219647,125219646,125219647,50,+,CTGGGAGCCATCTGTGCCATCATCGTGGTAGTTATTGTAAGTAAGTATCG,"Exon (Vamp1-201/Vamp1, exon 4 of 5)",6,125215551,125222306,6756,1,Vamp1-201,4047,Tapbpl-201;Vamp1-201;Vamp1-203;Vamp1-202;Vamp1-206,Tapbpl;Vamp1;Vamp1;Vamp1;Vamp1,12213;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,22317,ENSMUSG00000030337,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13115,cg12276027,-0.0000115,0.00000357,-3.218997288,0.001422689,loss,ns,0.00000375,0.00000606,0.618767901,0.536523678,pos,ns,-0.002304601,0.001774781,-1.2985271,0.195071402,neg,ns,0.709806394,0.0000881,0.000061,1.444250257,0.149678502,pos,ns,0.916574076,Tcf4,Tcf4_Intron,18,69506459,69506508,69506459,69506460,50,-,CGTCGGGCCTGCTCTGATGCCATATGGCCTACCATGGAACATTTAACTTG,"Intron (Tcf4-259/Tcf4, intron 5 of 6)",18,69343356,69564082,220727,1,Tcf4-259,163103,Tcf4-259;Tcf4-201;Tcf4-207;Tcf4-210;Tcf4-240;Tcf4-254;Tcf4-246;Tcf4-206;Tcf4-202;Tcf4-257;Tcf4-232;Tcf4-248;Tcf4-231;Tcf4-205;Tcf4-253;Tcf4-233;Tcf4-238;Tcf4-245;Tcf4-249;Tcf4-219;Tcf4-235;Tcf4-227;Tcf4-250;Tcf4-229;Tcf4-260;Tcf4-226;Tcf4-216;Tcf4-256,Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,42,66,21413,ENSMUSG00000053477,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
604,cg15217778,-0.00000548,0.00000934,-0.586570491,0.55791909,loss,ns,0.00000982,0.0000159,0.61876733,0.536524053,pos,ns,-0.010784245,0.004648607,-2.3198875,0.020996197,neg,ns,1.677859365,0.000405645,0.000159865,2.537416544,0.011657162,pos,ns,0.731973804,Clcn5,Clcn5_Exon,X,7170335,7170384,7170383,7170384,50,-,TGTATTTGTTGAAGCAGTGGCACAGGATGTTCCCACAGCAGCAAGCCACG,"Exon (Clcn5-201/Clcn5, exon 6 of 12)",20,7153810,7188714,34905,2,Clcn5-201,18330,Clcn5-201;Clcn5-202;Clcn5-205;Clcn5-203,Clcn5;Clcn5;Clcn5;Clcn5,0;0;0;148974,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,12728,ENSMUSG00000004317,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12732,cg05068647,0.0000299,0.00000942,3.174877626,0.001649651,gain,ns,-0.0000099,0.000016,-0.618757034,0.536530828,neg,ns,-0.000197084,0.004688232,-0.042038003,0.966495466,neg,ns,0.014800179,0.00020691,0.000161228,1.283336652,0.20033268,pos,ns,0.203233731,Limch1,Limch1_Exon,5,66997184,66997233,66997184,66997185,50,+,CGCCAGGAGCAGCTGCAGCTGATAAATAACCAGCTGAGGGAAGAGGACGA,"Exon (Limch1-202/Limch1, exon 10 of 26)",5,66745845,67056214,310370,1,Limch1-202,251339,Limch1-202;Limch1-219;Limch1-204;Limch1-203;Limch1-215;Limch1-201;Limch1-220;Limch1-212;Limch1-207;Limch1-209;Limch1-205;Limch1-213;Limch1-211,Limch1;Limch1;Limch1;Limch1;Limch1;Limch1;Limch1;Limch1;Limch1;Limch1;Limch1;Limch1;Limch1,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,77569,ENSMUSG00000037736,conserved gene and region,5,66996983,66997185,203,*,203,17,0.640394089,0.823824302,0.083743842,5.80E-12,CpGisland,TRUE,NA,NRS
8607,cg04875566,0.0000998,0.0000188,5.300536697,0.00000022,gain,yes,-0.0000198,0.000032,-0.61872505,0.536551874,neg,ns,0.029926723,0.009367762,3.194650308,0.001544085,pos,ns,2.811328903,-0.000718779,0.000322157,-2.231148156,0.026386258,neg,ns,0.284788076,Btrc,Btrc_Intron,19,45440717,45440766,45440717,45440718,50,+,CGTTGTCACTTACACACAGCTGATTGAGATATCTCATGGAGAATACTGAA,"Intron (Btrc-204/Btrc, intron 1 of 2)",19,45363734,45507736,144003,1,Btrc-204,76983,Btrc-204;Btrc-201;Btrc-210;Btrc-206;Btrc-202;Btrc-203;Btrc-208;Btrc-205;Btrc-209,Btrc;Btrc;Btrc;Btrc;Btrc;Btrc;Btrc;Btrc;Btrc,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,63,98,12234,ENSMUSG00000025217,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12378,cg27484547,-0.00000458,0.00000787,-0.582235823,0.560831051,loss,ns,0.00000828,0.0000134,0.618663439,0.536592417,pos,ns,0.0000737,0.003919371,0.018811787,0.985003353,pos,ns,0.006562291,-0.000131964,0.000134787,-0.979059528,0.328313999,neg,ns,0.833458789,Klf7,Klf7_Exon,1,64078719,64078768,64078767,64078768,50,+,TCTGGTGGGCCTTTAAGTGGGAGCTTTTTGTATAAACTTTCCGGCACCCG,"Exon (Klf7-202/Klf7, exon 2 of 4)",1,64029447,64121491,92045,2,Klf7-202,42723,Klf7-202;Klf7-201;Klf7-203,Klf7;Klf7;Klf7,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,21,93691,ENSMUSG00000025959,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26894,cg20233387.2,0.0000366,0.00000895,4.087407348,0.0000556,gain,ns,0.00000941,0.0000152,0.618565753,0.536656702,pos,ns,0.007839748,0.0044545,1.759961453,0.079400571,pos,ns,1.100176372,-0.000225443,0.00015319,-1.471658822,0.142127443,neg,ns,0.06814509,Tyw3,Tyw3_Intergenic_downstream,3,154468117,154468166,154468117,154468118,50,+,CGGATTTAGTTTTTAATGATGATTAGAGAGGATGGGCCCCTAAAATTTCT,Distal Intergenic,3,154579845,154594534,14690,2,Tyw3-203,126368,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,3,209584,ENSMUSG00000047583,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1411,cg27704940,0.0000377,0.0000103,3.657283384,0.000299396,gain,ns,0.0000108,0.0000175,0.618460982,0.536725653,pos,ns,0.011223027,0.005136343,2.185023067,0.029635574,pos,ns,1.528186659,-0.000184296,0.000176638,-1.043349656,0.297599319,neg,ns,0.244372685,Rpl36-ps3,Rpl36-ps3_Intergenic_upstream,12,12725127,12725176,12725175,12725176,50,-,AGGATTTAGACTGACTGTTTGCACTGCAGACTGCGGCCACTGGGTTCCCG,Distal Intergenic,12,12912022,12912336,315,1,Rpl36-ps3-201,-186895,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,19,20,100043215,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27024,cg26680566,0.000011,0.00000308,3.58710632,0.000388397,gain,ns,-0.00000323,0.00000523,-0.618374086,0.536782844,neg,ns,0.000324452,0.001530825,0.21194598,0.832288459,pos,ns,0.079726127,-0.0000531,0.0000526,-1.008803769,0.313855506,neg,ns,0.896528578,Epb41l1,Epb41l1_Exon,2,156534670,156534719,156534718,156534719,50,-,TGGTTATATTCTGCAGATCATCGGGAAAGATGTCCTCACCAGCACCTACG,"Exon (Epb41l1-203/Epb41l1, exon 20 of 23)",2,156420909,156543214,122306,1,Epb41l1-203,113761,Epb41l1-203;Epb41l1-204;Epb41l1-206;Epb41l1-202;Epb41l1-205;Epb41l1-201;Epb41l1-207,Epb41l1;Epb41l1;Epb41l1;Epb41l1;Epb41l1;Epb41l1;Epb41l1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,4,13821,ENSMUSG00000027624,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14636,cg11324043,-0.0000131,0.0000111,-1.186797913,0.236216027,loss,ns,0.0000116,0.0000188,0.618206814,0.536892943,pos,ns,0.013509222,0.005501701,2.455462773,0.014619061,pos,ns,1.835080521,-0.000665193,0.000189203,-3.515761318,0.000503936,neg,ns,0.748614261,Slf1,Slf1_Exon,13,77046561,77046610,77046561,77046562,50,+,CGTTTGACAGTGCATCATGCAAAGGAGTCACCCCGTCCACTTGAGTGAGC,"Exon (Slf1-201/Slf1, exon 20 of 21)",13,77043088,77135473,92386,2,Slf1-201,88863,Slf1-201;Slf1-204,Slf1;Slf1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,105377,ENSMUSG00000021597,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18834,cg02456666,0.000000425,0.000000871,0.487823084,0.626019987,gain,ns,-0.000000915,0.00000148,-0.618178866,0.53691134,neg,ns,-0.000179111,0.000433751,-0.412936051,0.67993893,neg,ns,0.167530093,-0.00000772,0.0000149,-0.517826673,0.604948544,neg,ns,0.976164969,Gm48070,Gm48070_Promoter,13,97601218,97601267,97601266,97601267,50,-,AGTGCCATGAAGCAAGTCCAAACTTTATGGCTTTCCTAGAGTTGATGACG,Promoter (8-9kb),13,97609536,97609817,282,1,Gm48070-201,-8318,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21817,cg16064137,0.0000888,0.0000126,7.056451302,1.12E-11,gain,yes,-0.0000132,0.0000214,-0.618016648,0.537018126,neg,ns,0.018534332,0.006262454,2.959595738,0.003317892,pos,ns,2.479137757,-0.000581065,0.000215365,-2.698042852,0.007356848,neg,ns,0.323588653,Lmo1,Lmo1_Intergenic_upstream,7,109191963,109192012,109192011,109192012,50,-,AGAGGCAACAGATGCCACTTCAGGAGCAGAGCATCCTGGGAGCCCAGCCG,Distal Intergenic,7,109138675,109175207,36533,2,Lmo1-202,-16805,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,34,66,109594,ENSMUSG00000036111,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5511,cg26723421,-0.0000189,0.00000463,-4.083621882,0.0000565,loss,ns,0.00000486,0.00000787,0.617979219,0.537042766,pos,ns,-0.002189351,0.002305874,-0.949466841,0.343122831,neg,ns,0.464550384,0.000115002,0.0000793,1.450235054,0.148003984,pos,ns,0.892436616,Kalrn,Kalrn_Exon,16,34153448,34153497,34153448,34153449,50,+,CGTAAGTGGAGAAAGGATCTCCAGGTCCCAGGTGCCACCGAGGAACAAGG,"Exon (Kalrn-207/Kalrn, exon 34 of 34)",16,33975495,34456917,481423,2,Kalrn-201,303420,Kalrn-201;Kalrn-209;Kalrn-217;Kalrn-208;Kalrn-207;Kalrn-206;Kalrn-202;Kalrn-205;Kalrn-204;Kalrn-218,Kalrn;Kalrn;Kalrn;Kalrn;Kalrn;Kalrn;Kalrn;Kalrn;Kalrn;Kalrn,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,18,22,545156,ENSMUSG00000061751,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24088,cg10529428,-0.000000963,0.0000109,-0.087957269,0.92996743,loss,ns,-0.0000115,0.0000186,-0.617964328,0.537052569,neg,ns,-0.004621083,0.005449761,-0.847942321,0.397124312,neg,ns,0.401073525,0.000161456,0.000187417,0.861478898,0.389640193,pos,ns,0.756808064,Zic5,Zic5_Intergenic_downstream,14,122455579,122455628,122455579,122455580,50,+,CGTTTTAAAGCAGAAAATAAGAAGGGGAAACTTGTTTTATACACTCTATA,Downstream (1-2kb),14,122459193,122460021,829,2,Zic5-202,4393,Zic5-201;Zic5-202,Zic5;Zic5,0;4393,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,14,26,65100,ENSMUSG00000041703,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
12953,cg17310539,-0.0000205,0.00000804,-2.549965356,0.011254294,loss,ns,-0.00000843,0.0000137,-0.617780816,0.537173389,neg,ns,-0.00378039,0.003999312,-0.945260248,0.345262196,neg,ns,0.461850971,0.0000811,0.000137536,0.589319251,0.556076354,pos,ns,0.777198291,Fmr1,Fmr1_Exon,X,68712225,68712274,68712225,68712226,50,-,CGATAGGAACTAATTCTGAAGCATCAAATGCTTCTGAAACAGAATCTGAC,"Exon (Fmr1-201/Fmr1, exon 15 of 17)",20,68678541,68717963,39423,1,Fmr1-201,33684,Fmr1-201;Fmr1-213;Fmr1-205;Fmr1-203;Fmr1-204;Fmr1-206;Fmr1-202;Fmr1-208,Fmr1;Fmr1;Fmr1;Fmr1;Fmr1;Fmr1;Fmr1;Fmr1,0;33643;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,8,14265,ENSMUSG00000000838,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26637,cg23805280,-0.0000184,0.00000491,-3.733862643,0.000224335,loss,ns,-0.00000516,0.00000835,-0.617697277,0.537228394,neg,ns,0.000239688,0.00244607,0.097989174,0.922004216,pos,ns,0.035267093,-0.000216179,0.0000841,-2.569887989,0.010640178,neg,ns,0.913140821,Pex14,Pex14_Intron,4,149052567,149052616,149052615,149052616,50,+,ATTGAGTATTTTTTATATTTCATTATGCCCCAAATTGACGAGGACTCCCG,"Intron (Pex14-201/Pex14, intron 2 of 8)",4,148960535,149099876,139342,2,Pex14-201,47260,Pex14-201;Pex14-202;Pex14-205;Pex14-203;Pex14-204,Pex14;Pex14;Pex14;Pex14;Pex14,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,41,48,56273,ENSMUSG00000028975,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24853,cg22502837,-0.000018,0.00000839,-2.148937714,0.03241341,loss,ns,-0.0000088,0.0000143,-0.617540836,0.537331407,neg,ns,-0.000685952,0.004175425,-0.164283042,0.869615393,neg,ns,0.060672781,-0.000252713,0.000143593,-1.759933702,0.079405286,neg,ns,0.156907081,Gdf11,Gdf11_Exon,10,128891626,128891675,128891674,128891675,50,+,GGGCCGCAGCTCCAGGGCGAGGAGCAGGAAGCCCAGCAGCAGCGGGGCCG,Promoter (<=1kb),10,128882295,128891718,9424,2,Gdf11-201,43,Gdf11-201,Gdf11,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,7,14561,ENSMUSG00000025352,conserved gene and region,10,128891066,128892002,937,*,937,105,0.733191035,0.835754332,0.112059765,2.94E-85,CpGisland,TRUE,U2,Pr-W
4008,cg13852712,-0.0000264,0.00000764,-3.461065073,0.000613541,loss,ns,-0.00000802,0.000013,-0.617481093,0.537370749,neg,ns,-0.005647782,0.003803387,-1.484934914,0.138577201,neg,ns,0.858308216,0.0000778,0.000130798,0.595095578,0.552213724,pos,ns,0.81574176,Slmap,Slmap_Exon,14,26416217,26416266,26416265,26416266,50,-,ATGGACCGAAACACCAAAACAGGAAAGCCAGGAATAGGCCGATGAATACG,"Exon (Slmap-203/Slmap, exon 23 of 24)",14,26413168,26534931,121764,2,Slmap-203,118665,Slmap-203;Slmap-205;Slmap-215;Slmap-201;Slmap-202;Slmap-204;Slmap-212;Slmap-213,Slmap;Slmap;Slmap;Slmap;Slmap;Slmap;Slmap;Slmap,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,7,83997,ENSMUSG00000021870,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27390,cg12908952,-0.00000073,0.00000123,-0.593026858,0.553595555,loss,ns,-0.00000129,0.00000209,-0.61731285,0.537481549,neg,ns,-0.000152934,0.00061288,-0.249533971,0.80311303,neg,ns,0.095223328,0.00000665,0.0000211,0.315356532,0.752703149,pos,ns,0.032256992,Pou2f1,Pou2f1_Promoter,1,166002127,166002176,166002127,166002128,50,-,CGCCCCGCCGGCCCAGCAGCTATGAATATGTAAAATGTCTTTATTGTCCT,Promoter (<=1kb),1,165865154,166002678,137525,2,Pou2f1-208,502,Pou2f1-208;Pou2f1-206;Pou2f1-216;Pou2f1-209;Pou2f1-201;Pou2f1-215;Pou2f1-214;Pou2f1-211;Pou2f1-212,Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,3,18,18986,ENSMUSG00000026565,conserved gene and region,1,166001466,166002133,668,*,668,72,0.755988024,0.765542928,0.107784431,2.58E-57,CpGisland,TRUE,U1,Pr-A
18256,cg20350072,0.0000411,0.00000495,8.305324684,3.13E-15,gain,yes,0.00000519,0.00000841,0.617191812,0.537561268,pos,ns,0.0045595,0.002464351,1.850182857,0.065238613,pos,ns,1.185495282,-0.0000913,0.0000847,-1.077516631,0.28208729,neg,ns,0.106986488,Ap3b1,Ap3b1_Intergenic_downstream,13,94596639,94596688,94596687,94596688,50,+,GCTCGCTGACACCTAATTGTTACTGGATTAATGTGCAAACAGGGACAGCG,Distal Intergenic,13,94542303,94547867,5565,1,Ap3b1-202,54336,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,33,55,11774,ENSMUSG00000021686,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
3058,cg02176407,0.0000655,0.00000838,7.808644368,8.99E-14,gain,yes,-0.00000879,0.0000142,-0.61709115,0.537627571,neg,ns,0.010589718,0.004171787,2.538413031,0.011624707,pos,ns,1.934617992,-0.00024052,0.000143467,-1.676475936,0.094653116,neg,ns,0.069054429,Pou3f2,Pou3f2_Exon,4,22488078,22488127,22488126,22488127,50,-,GATGGAGGCGCTGGAGGTGAGCAGGCTGTAGTGGTTAGACGCTGCGGTCG,Promoter (<=1kb),4,22482780,22488366,5587,2,Pou3f2-201,239,Pou3f2-201,Pou3f2,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,18,18992,ENSMUSG00000095139,conserved gene and region,4,22487763,22488174,412,*,412,49,0.735436893,0.881726066,0.118932039,1.63E-41,CpGisland,TRUE,U3,Pr-B
23636,cg01174929,-0.0000691,0.00000956,-7.226930339,3.87E-12,loss,yes,0.00001,0.0000162,0.617034641,0.537664794,pos,ns,-0.009951282,0.004758592,-2.091223967,0.03732178,neg,ns,1.428037654,0.0000147,0.000163648,0.089719565,0.928568006,pos,ns,0.595849545,Ino80,Ino80_Intron,2,119411134,119411183,119411182,119411183,50,+,GCTGGTTGGTTCTCACAGTAAACAGCCAGTGAGGCTGGTGCTTTTTATCG,"Intron (Ino80-201/Ino80, intron 26 of 35)",2,119373042,119477687,104646,2,Ino80-201,66504,Ino80-201;Ino80-202,Ino80;Ino80,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,3,68142,ENSMUSG00000034154,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8538,cg10172407,-0.00000381,0.00000257,-1.484911035,0.138583524,loss,ns,0.00000269,0.00000436,0.616974079,0.537704688,pos,ns,0.001546051,0.00127724,1.210462054,0.227023746,pos,ns,0.643928714,-0.0000611,0.0000439,-1.391000796,0.165222749,neg,ns,0.927866084,Btrc,Btrc_Intron,19,45312191,45312240,45312239,45312240,50,-,CATCGGCAGATTCTTTCATTATACAAGATTTAGCATCTGCTCAGGGATCG,"Intron (Gm28578-208/Gm28578-208, intron 3 of 6)",19,45363734,45507736,144003,1,Btrc-204,-51543,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,63,98,12234,ENSMUSG00000025217,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15723,cg20277552,-0.00000387,0.00000196,-1.973253236,0.049354691,loss,ns,-0.00000205,0.00000333,-0.616972594,0.537705666,neg,ns,0.001067342,0.000975173,1.09451518,0.274578777,pos,ns,0.561333034,-0.0000526,0.0000335,-1.567794949,0.117949147,neg,ns,0.056978955,Phip,Phip_Exon,9,82975094,82975143,82975094,82975095,50,+,CGCCTGCTGACAGGGTCCATCTTCCAGGAACCGGGCGATGAGGAAGTAGA,Promoter (<=1kb),9,82866159,82975516,109358,2,Phip-201,373,Phip-201;Phip-207;Phip-204;Phip-210;Phip-205;Phip-215,Phip;Phip;Phip;Phip;Phip;Phip,0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,13,83946,ENSMUSG00000032253,conserved gene and region,9,82974706,82975816,1111,*,1111,168,0.765076508,1.034038027,0.151215122,1.08E-161,CpGisland,TRUE,U1,Pr-A
4284,cg04946555,-0.00000375,0.0000021,-1.786257804,0.075034746,loss,ns,-0.0000022,0.00000356,-0.616854362,0.537783554,neg,ns,-0.002809069,0.00104368,-2.691504692,0.007499188,neg,ns,2.124985732,0.0000469,0.0000359,1.30581122,0.19258494,pos,ns,0.976004783,Dyrk1b,Dyrk1b_Exon,7,28185710,28185759,28185758,28185759,50,+,CCAGGATTACCAGGGCCCCGGGACACGGCGGCTGCAGGAGGTGCTGGGCG,"Exon (Dyrk1b-201/Dyrk1b, exon 9 of 11)",7,28179469,28187294,7826,1,Dyrk1b-201,6241,Dyrk1b-201;Dyrk1b-203;Dyrk1b-202,Dyrk1b;Dyrk1b;Dyrk1b,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,8,13549,ENSMUSG00000002409,conserved gene and region,7,28185735,28186008,274,*,274,29,0.748175183,0.761548783,0.105839416,3.86E-23,CpGisland,TRUE,U10,Tr-S
107,cg23003631,0.0000892,0.0000148,6.0182032,4.97E-09,gain,yes,-0.0000155,0.0000252,-0.616829048,0.537800231,neg,ns,0.021659887,0.007373976,2.937341689,0.003558484,pos,ns,2.448734963,-0.000461247,0.00025359,-1.818864209,0.069896878,neg,ns,0.456231405,Nox3,Nox3_Intergenic_upstream,17,4197300,4197349,4197348,4197349,50,-,CTGCAAATGCATTGTGCAATTACTGTTAAGATGGGCGAACATTTGGCCCG,Distal Intergenic,17,3635240,3696261,61022,2,Nox3-201,-501088,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,6,224480,ENSMUSG00000023802,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8786,cg10032440,-0.000000549,0.0000026,-0.211331733,0.832767283,loss,ns,0.00000272,0.00000442,0.616800485,0.537819048,pos,ns,0.00260833,0.001293466,2.016543347,0.044605225,pos,ns,1.350614266,-0.0001204,0.0000445,-2.706693933,0.007172253,neg,ns,0.93776225,Dscaml1,Dscaml1_threeUTR,9,45753597,45753646,45753597,45753598,50,-,CGATTTTACTGTTCCAAGAAAACCAGGAGTTGCTTCAATTTGCAGATGCT,3' UTR,9,45430291,45753712,323422,1,Dscaml1-201,323306,Dscaml1-211;Dscaml1-201;Dscaml1-210;Dscaml1-203,Dscaml1;Dscaml1;Dscaml1;Dscaml1,0;0;0;2898,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,32,114873,ENSMUSG00000032087,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22673,cg23364026,-0.00000365,0.00000202,-1.805914018,0.071901632,loss,ns,0.00000212,0.00000343,0.616745995,0.537854947,pos,ns,0.001395789,0.00100517,1.388610707,0.165948058,pos,ns,0.780027825,-0.0000248,0.0000346,-0.718238162,0.473151402,neg,ns,0.949558448,BC052040,BC052040_Intron,2,115660022,115660071,115660070,115660071,50,-,TCTTTTAACTGTCTCATTACATAAAGAATTCATAGTGAAGTTAACATCCG,"Intron (BC052040-203/BC052040, intron 5 of 10)",2,115581716,115778768,197053,1,BC052040-203,78306,BC052040-203;BC052040-201,BC052040;BC052040,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,37,49,399568,ENSMUSG00000040282,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10966,cg25265146,0.00000258,0.00000494,0.522060122,0.602001298,gain,ns,-0.00000517,0.00000839,-0.61670423,0.537882464,neg,ns,0.001132542,0.00245715,0.460917031,0.645181325,pos,ns,0.190318212,-0.0000436,0.0000845,-0.515424963,0.606623454,neg,ns,0.936903377,Tcf7l2,Tcf7l2_Exon,19,55926659,55926708,55926707,55926708,50,-,TTTTGTGTTTACCTTATGCTAACAGATGCAAATACTCCAAAGAAGTGTCG,"Exon (Tcf7l2-213/Tcf7l2, exon 13 of 14)",19,55741820,55933229,191410,1,Tcf7l2-213,184839,Tcf7l2-213;Tcf7l2-201;Tcf7l2-208;Tcf7l2-211;Tcf7l2-212;Tcf7l2-222;Tcf7l2-215;Tcf7l2-207;Tcf7l2-202;Tcf7l2-209;Tcf7l2-210;Tcf7l2-203,Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,88,21416,ENSMUSG00000024985,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24806,cg11288701,0.0000246,0.00000513,4.794598639,0.00000253,gain,ns,0.00000537,0.00000871,0.616615147,0.537941158,pos,ns,0.001660049,0.002551914,0.650511188,0.5158439,pos,ns,0.287481701,0.0000367,0.0000878,0.418562216,0.675825937,pos,ns,0.779022924,Csmd2,Csmd2_Exon,4,128523522,128523571,128523570,128523571,50,+,ATCTGCCAGCAGGATCATCACTGGTCGGGCAAGACCCCTTTCTGTGTGCG,"Exon (Csmd2-205/Csmd2, exon 53 of 71)",4,127988044,128567656,579613,1,Csmd2-205,535478,Csmd2-205,Csmd2,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,9,329942,ENSMUSG00000028804,conserved gene and region,4,128523431,128523617,187,*,187,13,0.598930481,0.775191327,0.069518717,0.00000003,CpGisland,TRUE,U15,NS
26893,cg20233387.1,-0.0000746,0.0000107,-6.96538376,1.97E-11,loss,yes,0.0000112,0.0000182,0.616425287,0.538066262,pos,ns,-0.020584685,0.005331379,-3.861043094,0.000137439,neg,ns,3.861889395,0.000336259,0.000183346,1.834016148,0.067610041,pos,ns,0.431357772,Tyw3,Tyw3_Intergenic_downstream,3,154468117,154468166,154468117,154468118,50,-,CGGATTTAGTTTTTAATGATGATTAGAGAGGATGGGCCCCTAAAATTTCT,Distal Intergenic,3,154579845,154594534,14690,2,Tyw3-203,126417,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,3,209584,ENSMUSG00000047583,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25574,cg11731303,-0.00000991,0.00000748,-1.325409475,0.186011336,loss,ns,-0.00000783,0.0000127,-0.616408767,0.538077148,neg,ns,0.004366746,0.00372235,1.17311518,0.24165021,pos,ns,0.616812822,-0.000284234,0.000128011,-2.220383736,0.027115541,neg,ns,0.819715033,Ebf3,Ebf3_Intron,7,137250304,137250353,137250352,137250353,50,+,CCTATGACAATAATTGATTGTGATTCACTCCTGAAATGTACCAATCCCCG,"Intron (Ebf3-204/Ebf3, intron 6 of 15)",7,137193673,137314445,120773,2,Ebf3-204,64092,Ebf3-204;Ebf3-201;Ebf3-202;Ebf3-203;Ebf3-208;Ebf3-205,Ebf3;Ebf3;Ebf3;Ebf3;Ebf3;Ebf3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,62,84,13593,ENSMUSG00000010476,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26609,cg10663134,0.000000314,0.00000149,0.210407406,0.833487942,gain,ns,0.00000156,0.00000253,0.616379348,0.538096535,pos,ns,0.001705763,0.00074197,2.298964005,0.022171798,pos,ns,1.654199089,-0.0000829,0.0000255,-3.247614954,0.001291325,neg,ns,0.961569486,Pex14,Pex14_Exon,4,148984608,148984657,148984608,148984609,50,+,CGTTTCTGAAGACGGGAATAATTTGCTTTATTTTATGACAAATGCAGAAA,"Exon (Gm17029-202/Gm17029-202, exon 3 of 3)",4,148960535,149099876,139342,2,Pex14-201,115219,Pex14-201;Pex14-202;Pex14-205;Pex14-203,Pex14;Pex14;Pex14;Pex14,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,48,56273,ENSMUSG00000028975,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27745,cg13320926,-0.00000462,0.00000192,-2.40413635,0.016797251,loss,ns,-0.00000201,0.00000326,-0.616308559,0.538143184,neg,ns,0.000332938,0.000955453,0.348461361,0.727730255,pos,ns,0.138029569,0.0000107,0.0000329,0.324936983,0.745447941,pos,ns,0.943722902,Wdr26,Wdr26_threeUTR,1,181177268,181177317,181177268,181177269,50,+,CGCAACGGGCAAGGCTAGAATCCATGAACCAAGCTGCAAAGATCTCAAGC,3' UTR,1,181173228,181211978,38751,2,Wdr26-207,34661,Wdr26-207;Wdr26-209;Wdr26-208;Wdr26-201;Wdr26-204;Wdr26-202;Wdr26-205,Wdr26;Wdr26;Wdr26;Wdr26;Wdr26;Wdr26;Wdr26,0;0;0;0;0;6422;7079,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,7,226757,ENSMUSG00000038733,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16670,cg21560352,-0.00000585,0.0000033,-1.771378104,0.077480285,loss,ns,0.00000346,0.00000561,0.616257113,0.538177089,pos,ns,-0.000465615,0.001644093,-0.283204591,0.777209035,neg,ns,0.109462159,0.0000426,0.0000565,0.753381225,0.451792647,pos,ns,0.931786084,Tbx4,Tbx4_Exon,11,85911957,85912006,85912005,85912006,50,+,AACAACCCTTTTGCCAAGGGATTCCGGGGCAGTGATGACAGTGACCTGCG,"Exon (Tbx4-203/Tbx4, exon 7 of 9)",11,85886422,85916095,29674,1,Tbx4-203,25535,Tbx4-203;Tbx4-201;Tbx4-202,Tbx4;Tbx4;Tbx4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,9,21387,ENSMUSG00000000094,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23007,cg01793100,-0.00000575,0.00000819,-0.702031175,0.48318647,loss,ns,0.00000858,0.0000139,0.616164569,0.53823808,pos,ns,0.000148306,0.004078149,0.036365958,0.971013964,pos,ns,0.012774525,-0.000121378,0.000140247,-0.865458297,0.387456559,neg,ns,0.782701558,Tmco5,Tmco5_Intergenic_upstream,2,116808112,116808161,116808160,116808161,50,-,GGCCTGAATCTGCCTTTGGTCACACTATTTGCTCCTCTATGGTCACCTCG,Distal Intergenic,2,116878691,116892181,13491,1,Tmco5-202,-70579,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,14,67356,ENSMUSG00000027355,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3027,cg07163137,0.0000818,0.0000125,6.527328742,2.73E-10,gain,yes,0.0000131,0.0000213,0.616048729,0.538314429,pos,ns,0.017497318,0.006237459,2.805199463,0.005346245,pos,ns,2.271951142,0.0000693,0.000214506,0.323174593,0.746780907,pos,ns,0.499456532,Lrmda,Lrmda_Intron,14,22440447,22440496,22440495,22440496,50,+,AGCACTTATCATTAACTTTCACACCAAGATTTTAATCAGCGCTCTTTGCG,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,420735,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206;Lrmda-202,Lrmda;Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3812,cg07122114,0.0000412,0.00000726,5.683218384,3.05E-08,gain,yes,-0.00000759,0.0000123,-0.616047149,0.53831547,neg,ns,-0.000183811,0.003611506,-0.050895982,0.959441186,neg,ns,0.017981642,-0.000039,0.000124199,-0.314002605,0.753730258,neg,ns,0.613680066,Celf4,Celf4_Exon,18,25491171,25491220,25491219,25491220,50,-,CGTCCCCAAACTCCTGGGGCAGATGGTAGATGAACAGGTTACAGCCCTCG,"Exon (Celf4-202/Celf4, exon 11 of 13)",18,25477632,25753983,276352,2,Celf4-202,262763,Celf4-202;Celf4-201;Celf4-203;Celf4-207;Celf4-206;Celf4-208;Celf4-210,Celf4;Celf4;Celf4;Celf4;Celf4;Celf4;Celf4,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,31,59,108013,ENSMUSG00000024268,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21592,cg24835507,-0.0000101,0.00000518,-1.958310189,0.051090155,loss,ns,0.00000542,0.0000088,0.615966938,0.538368341,pos,ns,-0.004457055,0.00257832,-1.728665922,0.084864559,neg,ns,1.07127364,0.000132753,0.0000887,1.497193359,0.135360414,pos,ns,0.868471403,Zfhx3,Zfhx3_Intron,8,108469383,108469432,108469431,108469432,50,-,ATCCGGCATCTATAATTATGCTATTTTCTCTCCTGTGCTGATTAAATACG,"Intron (Zfhx3-204/Zfhx3, intron 3 of 15)",8,107942644,108961630,1018987,1,Zfhx3-204,526739,Zfhx3-204,Zfhx3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,114,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9934,cg07059871,0.0000322,0.00000287,11.21807205,9.70E-25,gain,yes,-0.000003,0.00000488,-0.615896317,0.538414891,neg,ns,0.005897408,0.001429034,4.126848202,0.0000473,pos,ns,4.32503484,-0.000140654,0.0000491,-2.862063375,0.004495322,neg,ns,0.060508532,Slc17a6,Slc17a6_Exon,7,51625470,51625519,51625470,51625471,50,+,CGTGGCCATTGTGGACATGGTCAACAACAGCACCATCCACCGCGGGGGCA,"Exon (Slc17a6-201/Slc17a6, exon 2 of 12)",7,51622006,51671119,49114,1,Slc17a6-201,3464,Slc17a6-201;Slc17a6-203;Slc17a6-202;Slc17a6-204,Slc17a6;Slc17a6;Slc17a6;Slc17a6,0;0;0;-3961,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,4,140919,ENSMUSG00000030500,conserved gene and region,7,51625255,51625562,308,*,308,23,0.594155844,0.846153846,0.074675325,6.78E-15,CpGisland,TRUE,U13,Hc-P
14529,cg21414531,-0.0000899,0.0000201,-4.46712229,0.0000111,loss,ns,0.0000211,0.0000342,0.615820715,0.538464728,pos,ns,0.088539104,0.010017923,8.838069598,7.44E-17,pos,yes,16.12852232,-0.002269528,0.000344516,-6.587592152,1.92E-10,neg,yes,0.548049305,Nrip1,Nrip1_Intron,16,76320111,76320160,76320111,76320112,50,-,CGGGTGCCAATTACAGCAACCTTTCAACCCTTTAGGTACTGGAAACTACA,"Intron (Nrip1-202/Nrip1, intron 3 of 3)",16,76287400,76373827,86428,2,Nrip1-202,53667,Nrip1-202;Nrip1-201;Nrip1-208;Nrip1-204;Nrip1-207,Nrip1;Nrip1;Nrip1;Nrip1;Nrip1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,8,268903,ENSMUSG00000048490,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11061,cg03950925,-0.0000343,0.00000976,-3.519866343,0.000496498,loss,ns,0.0000102,0.0000166,0.615815815,0.538467958,pos,ns,-0.001319294,0.004857098,-0.271621879,0.786093571,neg,ns,0.104525755,-0.000259903,0.000167035,-1.555975639,0.120734173,neg,ns,0.817187018,Nkx2-1,Nkx2-1_Intergenic_downstream,12,56482625,56482674,56482673,56482674,50,-,ACCAAATGCCAGCTAATTGCTGCAATGGCCATTATAAAGAATAATTTTCG,Distal Intergenic,12,56531958,56535106,3149,2,Nkx2-1-202,52481,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,29,21869,ENSMUSG00000001496,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11181,cg20742567,0.00000241,0.0000015,1.606361025,0.1092127,gain,ns,-0.00000157,0.00000255,-0.615796568,0.538480646,neg,ns,0.001343256,0.000747059,1.798060086,0.073140351,pos,ns,1.135842958,-0.00006,0.0000257,-2.336166876,0.020119643,neg,ns,0.96119349,Satb2,Satb2_Intron,1,56850746,56850795,56850794,56850795,50,-,CAGTCCTGCTTAGCTTTACAAATCTGCCAAGTTTGGTAAATTTAGTTTCG,"Intron (Satb2-201/Satb2, intron 6 of 9)",1,56793981,56972502,178522,2,Satb2-201,121707,Satb2-201;Satb2-202;Satb2-205,Satb2;Satb2;Satb2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,33,212712,ENSMUSG00000038331,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
113,cg25756252,-0.0000341,0.00000734,-4.651552036,0.00000489,loss,ns,0.00000768,0.0000125,0.615741293,0.538517085,pos,ns,-0.006134451,0.003652911,-1.67933188,0.094094918,neg,ns,1.026433832,0.00006,0.000125623,0.478011337,0.632979035,pos,ns,0.863955043,Grk2,Grk2_threeUTR,19,4286030,4286079,4286078,4286079,50,+,GTCTCATTTTTCACTCTTTAAAATCACATTCAAAAATCGGCAAAGAAACG,3' UTR,19,4286001,4305955,19955,2,Grk2-201,19876,Ankrd13d-201;Ankrd13d-202;Ankrd13d-205;Ankrd13d-204;Grk2-201;Grk2-203;Grk2-202;Grk2-209;Grk2-204;Grk2-207;Grk2-205;Grk2-208,Ankrd13d;Ankrd13d;Ankrd13d;Ankrd13d;Grk2;Grk2;Grk2;Grk2;Grk2;Grk2;Grk2;Grk2,-2895;-2893;-2893;-2997;0;0;0;0;3324;3315;4404;5732,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,5,110355,ENSMUSG00000024858,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15089,cg19522352,-0.0000537,0.00000936,-5.731971106,2.35E-08,loss,yes,0.00000979,0.0000159,0.615670427,0.538563804,pos,ns,-0.018406637,0.00466042,-3.949566327,0.000097,neg,ns,4.013377405,0.000333416,0.000160271,2.080319213,0.038317339,pos,ns,0.236735771,Gm8345,Gm8345_Intergenic_upstream,13,79050775,79050824,79050823,79050824,50,-,ATGCAAAGTGTAATGTAGAGTCAAATGTCTCTCAGCACAAGAGTTGTTCG,Distal Intergenic,13,78953088,78954792,1705,2,Gm8345-201,-96032,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,13,666883,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2755,cg21160099,0.00000949,0.00000485,1.957267121,0.051213189,gain,ns,-0.00000507,0.00000824,-0.615656162,0.538573209,neg,ns,0.000979872,0.002413149,0.406055316,0.6849821,pos,ns,0.164320777,-0.000177256,0.000083,-2.135925233,0.033468689,neg,ns,0.454753862,Prdm13,Prdm13_Exon,4,21679890,21679939,21679938,21679939,50,-,AGGCTGTTGGGGTATCTAAACGTCCTCCAGCAGTACCAGCAGATGTAGCG,"Exon (Prdm13-205/Prdm13, exon 4 of 4)",4,21677480,21685963,8484,2,Prdm13-205,6024,Prdm13-205;Prdm13-201;Prdm13-202;Prdm13-203;Prdm13-206;Prdm13-204,Prdm13;Prdm13;Prdm13;Prdm13;Prdm13;Prdm13,0;0;0;0;0;5906,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,23,230025,ENSMUSG00000040478,conserved gene but different region,4,21679318,21679963,646,*,646,69,0.732198142,0.796931989,0.106811146,1.18E-54,CpGisland,TRUE,NA,NRS
21925,cg20631352,-0.0000108,0.00000551,-1.952494579,0.051779315,loss,ns,-0.00000577,0.00000937,-0.615600808,0.538609703,neg,ns,-0.009656965,0.002743722,-3.519658348,0.000496873,neg,ns,3.303754925,0.000344875,0.0000944,3.655028599,0.000301929,pos,ns,0.808066007,Atxn1l,Atxn1l_Exon,8,109733559,109733608,109733559,109733560,50,-,CGCTGGTCACGGGGAGGTCTCGTTTCTTTGGTGGAAGGCATTCCTGACTC,"Exon (Atxn1l-201/Atxn1l, exon 4 of 4)",8,109726451,109737739,11289,2,Atxn1l-201,4131,Atxn1l-201;Atxn1l-202;Atxn1l-204;Atxn1l-203,Atxn1l;Atxn1l;Atxn1l;Atxn1l,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,4,52335,ENSMUSG00000069895,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20694,cg14625788,0.0000432,0.00000783,5.508430919,7.61E-08,gain,yes,0.00000819,0.0000133,0.615592509,0.538615175,pos,ns,0.013666118,0.003899325,3.50473938,0.000524427,pos,ns,3.280314954,-0.000248412,0.000134097,-1.852470403,0.064908696,neg,ns,0.121142878,Pou4f1,Pou4f1_Promoter,14,104473600,104473649,104473600,104473601,50,+,CGTTTAAATAAATGAAGTGTTAATTCATTAGGATTAATTAATTTGTTAAA,Promoter (5-6kb),14,104461676,104467999,6324,2,Pou4f1-201,-5601,Rnf219-201,Rnf219,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,6,31,18996,ENSMUSG00000048349,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
2734,cg02221888,0.0000411,0.00000396,10.38511777,7.06E-22,gain,yes,-0.00000414,0.00000673,-0.615497381,0.538677895,neg,ns,0.008253106,0.001970404,4.188534688,0.0000366,pos,ns,4.436051249,-0.000190465,0.0000678,-2.810794771,0.00525646,neg,ns,0.082703378,Klhl14,Klhl14_Exon,18,21651726,21651775,21651774,21651775,50,+,CATCCTCCACCAGGTACTTGTTGGCCAGCTTCTTGGTCTCCTCCAGGCCG,Promoter (<=1kb),18,21550377,21652368,101992,2,Klhl14-201,593,Klhl14-201;Klhl14-202,Klhl14;Klhl14,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,38,225266,ENSMUSG00000042514,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
10553,cg05424177,-0.0000185,0.00000945,-1.958394561,0.051080214,loss,ns,-0.00000988,0.0000161,-0.615423302,0.53872674,neg,ns,-0.004317537,0.004704459,-0.91775431,0.359460971,neg,ns,0.444348256,-0.000155076,0.000161786,-0.958527125,0.33854398,neg,ns,0.754442401,Gm12469,Gm12469_Intergenic_upstream,4,54331658,54331707,54331658,54331659,50,+,CGGACGGTTTGGCGGCCTCTAAATTTATACCCTTGAAGGCACAGCAACAA,Distal Intergenic,4,54235670,54235876,207,2,Gm12469-201,-95782,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,9,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1510,cg21366977,0.0000233,0.00000744,3.126830352,0.001934592,gain,ns,0.00000777,0.0000126,0.61540238,0.538740535,pos,ns,-0.002679155,0.003701174,-0.723866389,0.469693653,neg,ns,0.328185308,0.000120983,0.000127283,0.950504216,0.34259656,pos,ns,0.677488152,Gm50093,Gm50093_Intergenic_downstream,18,13374263,13374312,13374263,13374264,50,+,CGACATTCCTGTGCCCATGTTTTATGCAAAGATGTGAGCAGCTGGCCACC,Distal Intergenic,18,13372089,13372552,464,1,Gm50093-201,2174,Gm50093-201,Gm50093,2174,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,11,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27797,cg12207784,-0.0000148,0.00000484,-3.058548079,0.002418129,loss,ns,0.00000506,0.00000823,0.61536354,0.538766146,pos,ns,-0.001375924,0.002410965,-0.570694495,0.568620188,neg,ns,0.245177726,0.000127677,0.0000829,1.539889443,0.124607399,pos,ns,0.883479666,Gpatch2,Gpatch2_Intergenic_downstream,1,187378104,187378153,187378104,187378105,50,-,CGTCTGTTTAAAATGAAAGGCTTTTACATTTTAATGAGCACTAAATAGGT,Distal Intergenic,1,187226180,187351427,125248,1,Gpatch2-208,151973,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,10,67769,ENSMUSG00000039210,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
2387,cg21684886,0.0000654,0.00000542,12.07779405,8.72E-28,gain,yes,-0.00000566,0.0000092,-0.61532811,0.538789509,neg,ns,0.00833309,0.002696271,3.090598494,0.002178779,pos,ns,2.661786769,-0.000213605,0.0000927,-2.303656195,0.021903273,neg,ns,0.101966894,Tfap2b,Tfap2b_Intron,1,19231857,19231906,19231857,19231858,50,-,CGTTGACAGCGTAATTTAAAGAAATATATGGAAGGCTGAAAAATCATTTG,"Intron (Tfap2b-201/Tfap2b, intron 6 of 6)",1,19208914,19238576,29663,1,Tfap2b-201,22943,Tfap2b-201;Tfap2b-204;Tfap2b-202,Tfap2b;Tfap2b;Tfap2b,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,40,21419,ENSMUSG00000025927,conserved gene and region,1,19231763,19231867,105,*,105,11,0.561904762,1.336805556,0.104761905,6.39E-09,CpGisland,TRUE,NA,NRS
27721,cg08750402,-0.00000314,0.00000386,-0.813024425,0.416828017,loss,ns,0.00000403,0.00000656,0.61531957,0.53879514,pos,ns,-0.000817864,0.001920606,-0.42583651,0.670522479,neg,ns,0.173586658,0.0000407,0.000066,0.616368475,0.538103699,pos,ns,0.930126245,Taf4,Taf4_Exon,2,179913485,179913534,179913485,179913486,50,-,CGTTCATTTTCTAAACAAAATATGAGGTCCCTGAGGTTGACCCGCGTGAT,"Exon (Taf4-201/Taf4, exon 15 of 15)",2,179912152,179976646,64495,2,Taf4-201,63112,Taf4-201;Taf4-204,Taf4;Taf4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,228980,ENSMUSG00000039117,conserved gene and region,2,179913485,179913596,112,*,112,10,0.598214286,0.998217469,0.089285714,0.000000188,CpGisland,TRUE,U10,Tr-S
25346,cg21206493,-0.0000102,0.00000658,-1.554348987,0.121121483,loss,ns,0.00000688,0.0000112,0.615308021,0.538802755,pos,ns,-0.006867954,0.003273824,-2.097838437,0.036728751,neg,ns,1.434993839,0.00012887,0.000112587,1.144628732,0.253245968,pos,ns,0.874478177,Nav1,Nav1_Exon,1,135465902,135465951,135465950,135465951,50,+,ACAGGGTGCTCCCCATTTGGGAGCCGCTGTACAGCTCGAAGGCCGCCTCG,"Exon (Nav1-201/Nav1, exon 10 of 30)",1,135434580,135585355,150776,2,Nav1-201,119404,Nav1-201;Nav1-202;Nav1-208;Nav1-205;Nav1-209;Nav1-206;Nav1-207,Nav1;Nav1;Nav1;Nav1;Nav1;Nav1;Nav1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,12,215690,ENSMUSG00000009418,mapped to different genes,1,135465776,135465997,222,*,222,16,0.630630631,0.746846089,0.072072072,2.79E-10,CpGisland,TRUE,NA,NRS
23739,cg23545825,-0.0000103,0.0000136,-0.759101163,0.448368847,loss,ns,0.0000142,0.0000231,0.615211705,0.53886627,pos,ns,0.027346656,0.006756609,4.047393805,0.0000655,pos,ns,4.183995257,-0.000896758,0.000232359,-3.859359003,0.000138346,neg,ns,0.4925433,Foxo6,Foxo6_Intergenic_downstream,4,120259836,120259885,120259884,120259885,50,-,GGACTTTATGTGCAATCTGCCCGACTCTCCAGAAAGCACTTAGGTTTACG,Distal Intergenic,4,120267079,120287349,20271,2,Foxo6-201,27513,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,42,329934,ENSMUSG00000052135,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
15121,cg15012627,-0.0000067,0.00000647,-1.03551124,0.301237307,loss,ns,0.00000676,0.000011,0.615210105,0.538867325,pos,ns,0.000953542,0.003220511,0.296084129,0.76736408,pos,ns,0.114998534,-0.0000432,0.000110753,-0.389624685,0.697081631,neg,ns,0.889186805,Wsb1,Wsb1_threeUTR,11,79243518,79243567,79243518,79243519,50,+,CGCCTGTGTGCGAGTGGTGCCAGCATAACCTCAATCACACCAATATTGCT,3' UTR,11,79239372,79254671,15300,2,Wsb1-201,11104,Wsb1-201;Wsb1-206;Wsb1-202;Wsb1-207;Wsb1-205;Wsb1-203;Wsb1-204,Wsb1;Wsb1;Wsb1;Wsb1;Wsb1;Wsb1;Wsb1,0;-494;0;-569;0;0;7457,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,7,7,78889,ENSMUSG00000017677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5266,cg04478353,-0.0000174,0.00000437,-3.989906777,0.0000825,loss,ns,-0.00000457,0.00000743,-0.615146278,0.538909417,neg,ns,-0.001756777,0.002176397,-0.807195216,0.420172906,neg,ns,0.376571955,-0.0000991,0.0000748,-1.323527922,0.186635115,neg,ns,0.946966271,Tlx3,Tlx3_Promoter,11,33209174,33209223,33209174,33209175,50,-,CGCTTATAAATAACTTATGTTATAGCTTTTGTTTGTGGAAATGTAACTTA,Promoter (5-6kb),11,33200752,33203589,2838,2,Tlx3-201,-5634,Ranbp17-202,Ranbp17,0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,4,20,27140,ENSMUSG00000040610,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10522,cg15454070,-0.000000194,0.000000894,-0.217049057,0.828312891,loss,ns,0.000000934,0.00000152,0.615053878,0.538970356,pos,ns,0.000726233,0.000444814,1.632666108,0.103554516,pos,ns,0.984830959,-0.0000262,0.0000153,-1.710954191,0.088089918,neg,ns,0.972775315,Shoc2,Shoc2_Exon,19,53988161,53988210,53988209,53988210,50,+,TTGCCTGACTCTCTTGATAACTTGAAGAAGCTGCGGATGCTTGATTTACG,Promoter (<=1kb),19,53988173,54033133,44961,1,Shoc2-207,0,Shoc2-202;Shoc2-201;Shoc2-205;Shoc2-203;Shoc2-207,Shoc2;Shoc2;Shoc2;Shoc2;Shoc2,0;0;43276;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,56392,ENSMUSG00000024976,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7431,cg08586488,0.0000378,0.00000388,9.751774672,9.03E-20,gain,yes,-0.00000405,0.00000659,-0.615027059,0.538988044,neg,ns,0.004330982,0.001929914,2.244132271,0.025529302,pos,ns,1.592961054,0.0000615,0.0000664,0.926544148,0.354884031,pos,ns,0.086336723,Ostm1,Ostm1_Intron,10,42632379,42632428,42632379,42632380,50,+,CGGGGGCACTTTTCAATGCAGCGCCGCAGCTCCCTCCAGATTTGTAATCC,"Intron (Ostm1-202/Ostm1, intron 2 of 5)",10,42583835,42698323,114489,1,Ostm1-202,48544,Ostm1-202;Ostm1-203,Ostm1;Ostm1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,21,22,14628,ENSMUSG00000038280,conserved gene and region,10,42632210,42632456,247,*,247,24,0.688259109,0.891562641,0.097165992,2.78E-18,CpGisland,TRUE,U3,Pr-B
17602,cg12195149,-0.000019,0.0000044,-4.310476769,0.0000219,loss,ns,-0.0000046,0.00000748,-0.614991735,0.539011341,neg,ns,-0.000160611,0.002190552,-0.073320051,0.941598721,neg,ns,0.02613414,0.0000518,0.0000753,0.687545943,0.492252836,pos,ns,0.86062044,Nr1h3,Nr1h3_Exon,2,91184698,91184747,91184746,91184747,50,+,TATGTGTGCTGCAGCCTCTCTACCTGGAGCTGGTCCTGCACGTTGGGCCG,"Exon (Nr1h3-208/Nr1h3, exon 7 of 8)",2,91184061,91195025,10965,2,Nr1h3-208,10278,Madd-208;Madd-213;Madd-205;Madd-203;Madd-204;Madd-209;Madd-210;Madd-214;Madd-202;Madd-215;Madd-216;Madd-224;Madd-226;Madd-227;Madd-217;Madd-201;Madd-220;Madd-225;Nr1h3-208;Nr1h3-204;Nr1h3-201;Nr1h3-203;Nr1h3-202;Nr1h3-205,Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Nr1h3;Nr1h3;Nr1h3;Nr1h3;Nr1h3;Nr1h3,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;-861;-1659;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,22259,ENSMUSG00000002108,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13898,cg13035237,0.0000131,0.00000323,4.059325226,0.0000624,gain,ns,0.00000337,0.00000549,0.614911471,0.53906428,pos,ns,0.001137077,0.001607203,0.707488301,0.479794608,pos,ns,0.318944637,0.0000022,0.0000553,0.039862655,0.968228284,pos,ns,0.080841463,Sp9,Sp9_threeUTR,2,73276271,73276320,73276319,73276320,50,+,AGATCTTTTTAATTGTCTAAATTAACTGCACCAAATTTGCATGTCAAACG,3' UTR,2,73271925,73277471,5547,1,Sp9-201,4346,Sp9-201;Sp9-202,Sp9;Sp9,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,10,21,381373,ENSMUSG00000068859,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
3168,cg15359143,-0.00000788,0.00000448,-1.760085281,0.079379537,loss,ns,-0.00000468,0.00000761,-0.614904743,0.539068718,neg,ns,-0.001528949,0.002229323,-0.685835296,0.493329558,neg,ns,0.306862863,-0.000160451,0.0000767,-2.092844926,0.037175698,neg,ns,0.796511273,Bmper,Bmper_Intergenic_upstream,9,23062778,23062827,23062826,23062827,50,+,CAACTGACAAATTGAGAAACAAGGCCATCAACTCTCACACATTGCATCCG,Distal Intergenic,9,23223076,23485200,262125,1,Bmper-201,-160249,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,73230,ENSMUSG00000031963,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21395,cg04237581,-0.0000268,0.00000411,-6.528582648,2.71E-10,loss,yes,-0.00000429,0.00000699,-0.614808659,0.539132095,neg,ns,-0.00318697,0.002046453,-1.557313593,0.120416334,neg,ns,0.919314599,-0.0000773,0.0000704,-1.098071177,0.273025549,neg,ns,0.891343085,Strip1,Strip1_Exon,3,107616846,107616895,107616894,107616895,50,-,AGCAGCAGCAGGACAGCAGAAATGGCCTTAACAATGACCTCTTTGTGGCG,"Exon (Strip1-201/Strip1, exon 16 of 21)",3,107612532,107631694,19163,2,Strip1-201,14799,Strip1-205;Strip1-201;Strip1-202;Strip1-203;Strip1-204,Strip1;Strip1;Strip1;Strip1;Strip1,-2765;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,229707,ENSMUSG00000014601,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24880,cg24005685,0.0000671,0.00000632,10.6156545,1.17E-22,gain,yes,0.0000066,0.0000107,0.614796005,0.539140442,pos,ns,0.013823137,0.003145701,4.394293993,0.0000153,pos,ns,4.815869309,-0.00029792,0.00010818,-2.753921383,0.006236222,neg,ns,0.122908961,Pitx2,Pitx2_Intron,3,129208048,129208097,129208048,129208049,50,+,CGTGAGCAGGAATATACTAATGGAACAATCTGATGTCTTCTTAATCCTAT,"Intron (Pitx2-207/Pitx2, intron 3 of 4)",3,129199878,129219590,19713,1,Pitx2-207,8170,Pitx2-207;Pitx2-201;Pitx2-203;Pitx2-205;Pitx2-204,Pitx2;Pitx2;Pitx2;Pitx2;Pitx2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,24,18741,ENSMUSG00000028023,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
4356,cg21266605,0.0000188,0.00000558,3.360591649,0.000875042,gain,ns,-0.00000583,0.00000948,-0.614790827,0.539143858,neg,ns,0.005449345,0.002777444,1.961999781,0.050656946,pos,ns,1.295360993,-0.000126839,0.0000955,-1.327932309,0.185177388,neg,ns,0.012118887,Wnt5a,Wnt5a_fiveUTR,14,28505703,28505752,28505751,28505752,50,-,GCACAATCACGCCCACATTTGGGGTTGGAAAGCCCTAATTACCGCCGTCG,Promoter (<=1kb),14,28504750,28527448,22699,1,Wnt5a-201,953,Wnt5a-201;Wnt5a-204;Wnt5a-206,Wnt5a;Wnt5a;Wnt5a,0;-148;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,8,22418,ENSMUSG00000021994,conserved gene and region,14,28505712,28506138,427,*,427,53,0.683840749,1.093760572,0.12412178,5.59E-46,CpGisland,TRUE,U3,Pr-B
12567,cg21230342,0.00000594,0.0000066,0.899129258,0.369281678,gain,ns,-0.0000069,0.0000112,-0.614756222,0.539166685,neg,ns,0.003777526,0.003287238,1.149149122,0.251380339,pos,ns,0.599668692,-0.0000633,0.000113048,-0.560317355,0.575667687,neg,ns,0.83044882,Tjp1,Tjp1_threeUTR,7,65299674,65299723,65299674,65299675,50,-,CGAGGAGTCGGATGATTTTAGAGCAAAAGACCAACCGTCAGGAGTCATGG,3' UTR,7,65296165,65371239,75075,2,Tjp1-202,71516,Tjp1-202;Tjp1-201;Tjp1-207;Tjp1-203,Tjp1;Tjp1;Tjp1;Tjp1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,13,21872,ENSMUSG00000030516,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8216,cg19059915,-0.00000147,0.00000116,-1.269833886,0.205096164,loss,ns,-0.00000121,0.00000197,-0.614561833,0.53929492,neg,ns,-0.001054631,0.000577412,-1.826479321,0.0687397,neg,ns,1.162792365,0.0000329,0.0000199,1.655032592,0.098929887,pos,ns,0.983385695,Med25,Med25_threeUTR,7,44879420,44879469,44879468,44879469,50,-,GATGAGATCCATGAGGATGTCGTCCTCCATGACGCTGGGCTGCAGGCCCG,3' UTR,7,44876765,44892391,15627,2,Med25-210,12922,Med25-210;Med25-201;Med25-211;Med25-205;Med25-204;Med25-209;Med25-214;Med25-212;Med25-207;Med25-202,Med25;Med25;Med25;Med25;Med25;Med25;Med25;Med25;Med25;Med25,0;0;0;0;1839;4670;5241;3715;0;5202,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,3,75613,ENSMUSG00000002968,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9728,cg08439798,-0.0000143,0.00000598,-2.389449585,0.017471059,loss,ns,-0.00000624,0.0000102,-0.614391932,0.539407014,neg,ns,-0.004540217,0.002975247,-1.52599671,0.12803026,neg,ns,0.892687373,0.0000225,0.000102318,0.219740708,0.826217723,pos,ns,0.844366424,Prkd1,Prkd1_Exon,12,50366368,50366417,50366416,50366417,50,+,CAGCATGTCTCCATGGAGTTTTTCCATAACAACAAACACTCTTTCAGGCG,"Exon (Prkd1-201/Prkd1, exon 15 of 19)",12,50341231,50649098,307868,2,Prkd1-201,282681,Prkd1-201,Prkd1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,8,18760,ENSMUSG00000002688,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12361,cg14471793,-0.000000863,0.00000216,-0.398967258,0.690192018,loss,ns,0.00000226,0.00000368,0.614370887,0.539420899,pos,ns,0.002311186,0.001076977,2.145994404,0.032649564,pos,ns,1.48612261,-0.0000497,0.000037,-1.341729147,0.180665813,neg,ns,0.072369425,Smad6,Smad6_fiveUTR,9,64022029,64022078,64022077,64022078,50,-,TCATTGGCTGCCTCCCATCATATGCCAGTCTAGACACTTTGGCGGCTCCG,Promoter (<=1kb),9,63953076,64022059,68984,2,Smad6-201,0,Smad6-201;Smad6-203,Smad6;Smad6,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,9,19,17130,ENSMUSG00000036867,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7800,cg02793066,0.00000227,0.00000269,0.842080274,0.400392183,gain,ns,-0.00000281,0.00000458,-0.614339041,0.539441911,neg,ns,0.002633802,0.001340814,1.964330268,0.050384912,pos,ns,1.297699498,-0.000105612,0.0000461,-2.290420529,0.022668118,neg,ns,0.922620036,Vps11,Vps11_threeUTR,9,44356215,44356264,44356263,44356264,50,-,CTGGTGGCCTTGCCTCCAGTTTGGTCTGTGTGTCCTTCTCCTGCAGTGCG,3' UTR,9,44347749,44361670,13922,2,Vps11-201,5406,Vps11-201;Vps11-205;Vps11-206;Vps11-202;Vps11-203;Vps11-204,Vps11;Vps11;Vps11;Vps11;Vps11;Vps11,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,2,71732,ENSMUSG00000032127,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10621,cg12440826,-0.00000716,0.00000243,-2.947645361,0.003445173,loss,ns,0.00000253,0.00000413,0.61416355,0.539557709,pos,ns,0.001248571,0.001208556,1.033110339,0.30235755,pos,ns,0.519479183,-0.000091,0.0000416,-2.189880027,0.029277865,neg,ns,0.031664161,1700123O20Rik,1700123O20Rik_fiveUTR,14,54686554,54686603,54686554,54686555,50,+,CGCAGCGCCTGAAGAGGCTTCCCGTCCAGAGTCACCTCCTCCAGCTCCGC,Promoter (<=1kb),14,54686216,54690741,4526,1,1700123O20Rik-201,338,1700123O20Rik-201;1700123O20Rik-202;1700123O20Rik-204;1700123O20Rik-203;Acin1-201;Acin1-218;Acin1-203;Acin1-206;Acin1-212;Acin1-210,1700123O20Rik;1700123O20Rik;1700123O20Rik;1700123O20Rik;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1,0;0;0;-441;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,5,58248,ENSMUSG00000040822,mapped to different genes,14,54686230,54687055,826,*,826,78,0.633171913,0.949845201,0.094430993,3.48E-57,CpGisland,TRUE,U1,Pr-A
746,cg25349226,0.0000161,0.00000729,2.213598163,0.02758419,gain,ns,0.0000076,0.0000124,0.614098367,0.539600723,pos,ns,-0.001800191,0.003626662,-0.496376912,0.619980286,neg,ns,0.20762212,0.000193645,0.000124721,1.552634236,0.121530825,pos,ns,0.013062831,Rhob,Rhob_Exon,12,8499530,8499579,8499530,8499531,50,+,CGTACACCTCGGGGAACTCGTCCTTACTGAACACGATCAGCAGGCACGTC,Promoter (<=1kb),12,8497661,8500009,2349,2,Rhob-201,430,Rhob-201,Rhob,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,11852,ENSMUSG00000054364,conserved gene and region,12,8499329,8500048,720,*,720,87,0.679166667,1.048824593,0.120833333,5.68E-74,CpGisland,TRUE,U1,Pr-A
4612,cg13419056,0.00000445,0.00000734,0.606721179,0.544480036,gain,ns,-0.00000766,0.0000125,-0.614095358,0.539602708,neg,ns,0.003773038,0.003653154,1.032816528,0.302494831,pos,ns,0.519282042,-0.000300634,0.000125632,-2.392980566,0.017306924,neg,ns,0.593371156,Ntm,Ntm_Intron,9,29957864,29957913,29957912,29957913,50,-,TGTTACAAGCATTAATGAGTCCTTACAACACCCAGGGGAGTCGCTCCCCG,"Intron (Ntm-201/Ntm, intron 1 of 7)",9,28994750,29963129,968380,2,Ntm-201,5216,Ntm-201;Ntm-204;Ntm-210;Ntm-207;Ntm-209,Ntm;Ntm;Ntm;Ntm;Ntm,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,27,32,235106,ENSMUSG00000059974,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3023,cg16085776,0.0000203,0.00000939,2.157837188,0.031708289,gain,ns,0.0000098,0.000016,0.614055816,0.539628803,pos,ns,-0.001695676,0.004673425,-0.362833773,0.716976322,neg,ns,0.144495187,0.000248035,0.000160719,1.543288526,0.123780958,pos,ns,0.839506369,Lrmda,Lrmda_Intron,14,22440303,22440352,22440351,22440352,50,+,CGACAGTCATCAATCCACTGAGCCCTGTAGCCATAAATAAGCTTCATTCG,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,420591,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206;Lrmda-202,Lrmda;Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2830,cg23280583,0.00000859,0.00000191,4.507603293,0.00000931,gain,ns,-0.00000199,0.00000324,-0.614010471,0.539658728,neg,ns,0.00000823,0.00094879,0.008676959,0.993082456,pos,ns,0.00301469,0.0000392,0.0000326,1.200833517,0.230732521,pos,ns,0.054247318,Faxc,Faxc_Exon,4,21931605,21931654,21931653,21931654,50,+,GGTGGATCTGAGCTGGAACCAGAGCATCTCCTTCTTCGGCTGGTGGGCCG,Promoter (<=1kb),4,21931329,21994146,62818,1,Faxc-204,276,Faxc-204;Faxc-201;Faxc-202;Faxc-203,Faxc;Faxc;Faxc;Faxc,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,76132,ENSMUSG00000028246,conserved gene and region,4,21931002,21931985,984,*,984,98,0.706300813,0.798767457,0.099593496,4.26E-74,CpGisland,TRUE,U3,Pr-B
26612,cg08668121,-0.0000139,0.00000482,-2.89377421,0.004076238,loss,ns,0.00000503,0.00000819,0.613997106,0.539667549,pos,ns,-0.004162568,0.002398009,-1.735843158,0.083585191,neg,ns,1.077870659,0.000120715,0.0000825,1.463791258,0.14426424,pos,ns,0.927075422,Pex14,Pex14_Intron,4,148988810,148988859,148988810,148988811,50,+,CGTAATGACGACACTGTAAAAACTAACAGTAATGGAAAGCTGTGCTGTAT,"Intron (Pex14-201/Pex14, intron 3 of 8)",4,148960535,149099876,139342,2,Pex14-201,111017,Pex14-201;Pex14-202;Pex14-205;Pex14-203,Pex14;Pex14;Pex14;Pex14,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,41,48,56273,ENSMUSG00000028975,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13656,cg08886274,0.0000834,0.0000122,6.820179712,4.77E-11,gain,yes,-0.0000127,0.0000208,-0.613947766,0.539700111,neg,ns,0.023048391,0.006082701,3.78917028,0.00018158,pos,ns,3.740933124,-0.00049981,0.000209184,-2.389336658,0.017476331,neg,ns,0.263865394,Gm47812,Gm47812_Exon,13,71785033,71785082,71785033,71785034,50,-,CGAGTGAGTGACACATAGCCCGACCGGGAGGACAACATTGTTATTTGAGT,"Exon (Gm40999-202/Gm40999-202, exon 1 of 1)",13,71625028,71625143,116,1,Gm47812-201,160054,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,5,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3272,cg20572062,-0.00000872,0.0000059,-1.47897917,0.14016128,loss,ns,0.00000615,0.00001,0.613930656,0.539711403,pos,ns,0.000173287,0.002935457,0.059032209,0.952964489,pos,ns,0.020923283,-0.000204344,0.00010095,-2.024206869,0.043806147,neg,ns,0.907726659,Gm11888,Gm11888_Intergenic_upstream,4,23446906,23446955,23446906,23446907,50,+,CGATAGCAGCAGTAGCTGGCACCACTGTAATAAAAGGACTTAAATGAAAA,Distal Intergenic,4,23484820,23486020,1201,1,Gm11888-201,-37865,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,14,625462,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15689,cg01701664,-0.0000191,0.00000598,-3.189379382,0.001571598,loss,ns,0.00000623,0.0000102,0.613687424,0.539871943,pos,ns,-0.002573453,0.002974698,-0.86511408,0.387645146,neg,ns,0.411565649,-0.0000399,0.0001023,-0.38975154,0.696987913,neg,ns,0.90352509,Gm14741,Gm14741_Intergenic_upstream,X,82815627,82815676,82815675,82815676,50,+,ATTCACGTTTTGCCAAGTTGATGTCGACCCAGCTGGTCTATGATTTCTCG,Distal Intergenic,20,82757430,82758438,1009,2,Gm14741-201,-57189,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,11,100415954,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14268,cg10659533,-0.0000834,0.0000104,-7.997933618,2.54E-14,loss,yes,0.0000109,0.0000177,0.613507033,0.539991022,pos,ns,-0.010460832,0.005186909,-2.016775593,0.044580828,neg,ns,1.350851868,0.000306462,0.000178377,1.718053108,0.086785453,pos,ns,0.735256688,Smg6,Smg6_Intron,11,75013307,75013356,75013307,75013308,50,+,CGTAGAATTAATCTCTGGGCACTTCACATTGCTGGCAGCTGAAAGCAGGA,"Intron (Smg6-201/Smg6, intron 10 of 18)",11,74925823,75164448,238626,1,Smg6-201,87484,Smg6-201;Smg6-202;Smg6-204,Smg6;Smg6;Smg6,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,34,103677,ENSMUSG00000038290,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19654,cg10959786,0.0000161,0.00000395,4.080653412,0.0000572,gain,ns,-0.00000412,0.00000671,-0.613472478,0.540013834,neg,ns,0.005026136,0.001967249,2.554906152,0.011099115,pos,ns,1.954711667,-0.000119959,0.0000677,-1.773143994,0.077186684,neg,ns,0.070168494,Klf12,Klf12_fiveUTR,14,100284498,100284547,100284546,100284547,50,-,CCCGGGGAACTGTTGTACTTGCAAATGACTTACCCGGATCACATGATGCG,Promoter (<=1kb),14,100248609,100284528,35920,2,Klf12-203,0,Klf12-205;Klf12-204;Klf12-203,Klf12;Klf12;Klf12,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,6,11,16597,ENSMUSG00000072294,mapped to different genes,14,100284532,100284652,121,*,121,13,0.685950413,0.929669031,0.107438017,1.21E-10,CpGisland,TRUE,U1,Pr-A
20528,cg20988451,-0.0000116,0.00000383,-3.027244083,0.00267503,loss,ns,-0.00000399,0.00000651,-0.613421963,0.540047183,neg,ns,0.000546628,0.001907331,0.286593191,0.774615274,pos,ns,0.110913944,-0.0000153,0.0000656,-0.234015863,0.815127134,neg,ns,0.903370731,Copz1,Copz1_Intron,15,103297485,103297534,103297533,103297534,50,+,TCTTAGGCTGCTGTTGCAGCAGTTTATTTCTTCAAATTAACATGCTGTCG,"Intron (Copz1-201/Copz1, intron 7 of 8)",15,103272910,103299868,26959,1,Copz1-201,24575,Copz1-202;Copz1-203;Copz1-201;Copz1-204,Copz1;Copz1;Copz1;Copz1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,6,56447,ENSMUSG00000060992,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4667,cg19434135,0.00000353,0.00000215,1.640249278,0.101967603,gain,ns,0.00000224,0.00000366,0.613340555,0.540100928,pos,ns,-0.0000562,0.001070884,-0.052461119,0.958195064,neg,ns,0.018546071,-0.0000311,0.0000368,-0.843863092,0.399396615,neg,ns,0.944621144,Cacna1d,Cacna1d_threeUTR,14,30082481,30082530,30082481,30082482,50,-,CGCATCACTCGGAAAAGACGGAAAAAGGTGATGGAGATTCTATTGCTCTC,Promoter (<=1kb),14,30039939,30082758,42820,2,Cacna1d-212,228,Cacna1d-212;Cacna1d-202;Cacna1d-201;Cacna1d-208;Cacna1d-209;Cacna1d-214;Cacna1d-204;Cacna1d-207;Cacna1d-218;Cacna1d-216;Cacna1d-217;Cacna1d-210;Cacna1d-219,Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,13,26,12289,ENSMUSG00000015968,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3560,cg10191283,-0.00000956,0.00000968,-0.988066087,0.323890847,loss,ns,0.0000101,0.0000164,0.613194527,0.540197343,pos,ns,0.015539421,0.004815468,3.226980668,0.00138485,pos,ns,2.858597322,-0.000608075,0.000165604,-3.671870892,0.000283485,neg,ns,0.660175117,Caskin1,Caskin1_Exon,17,24503875,24503924,24503923,24503924,50,+,GAACATTGATTTCATCACCGACATCACCTGGGAGGACCTGCAGGAGATCG,"Exon (Caskin1-201/Caskin1, exon 17 of 20)",17,24488783,24508671,19889,1,Caskin1-201,15092,Caskin1-203;Caskin1-201;Caskin1-204;Caskin1-202;Caskin1-205;Traf7-215;Traf7-219;Traf7-201;Traf7-202;Traf7-210;Traf7-216;Traf7-205;Traf7-217,Caskin1;Caskin1;Caskin1;Caskin1;Caskin1;Traf7;Traf7;Traf7;Traf7;Traf7;Traf7;Traf7;Traf7,15274;0;0;3449;0;24014;8564;15284;15284;23922;23926;23966;7109,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,268932,ENSMUSG00000033597,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21366,cg01408700,-0.0000349,0.0000087,-4.018056103,0.0000737,loss,ns,0.00000905,0.0000148,0.612776767,0.540473216,pos,ns,-0.005412966,0.004328875,-1.250432537,0.21208461,neg,ns,0.673490845,0.000207334,0.00014887,1.392724255,0.164701228,pos,ns,0.377816687,Myf6,Myf6_Exon,10,107493842,107493891,107493890,107493891,50,-,ATGATCGGAAACACTTGGCCACTGGGAGCTGCAGGTGCGCAGGAAATCCG,Promoter (<=1kb),10,107492853,107494737,1885,2,Myf6-201,846,Myf6-201,Myf6,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,17878,ENSMUSG00000035923,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5458,cg26542377,-0.0000306,0.00000533,-5.735018574,2.32E-08,loss,yes,-0.00000555,0.00000906,-0.612683314,0.540534939,neg,ns,-0.003723188,0.002655252,-1.402197407,0.161856857,neg,ns,0.790868898,0.0000268,0.0000913,0.293914611,0.76901984,pos,ns,0.866332592,Kalrn,Kalrn_Exon,16,34010540,34010589,34010588,34010589,50,+,GCCCAGAATATCCTTGGGTTTACGAGGCCCTGTGGCTTCATTTTTACCCG,"Exon (Kalrn-212/Kalrn, exon 17 of 27)",16,33969073,34095987,126915,2,Kalrn-212,85398,Gm49594-201;Kalrn-212;Kalrn-201;Kalrn-220;Kalrn-209;Kalrn-211;Kalrn-217;Kalrn-210;Kalrn-221,Gm49594;Kalrn;Kalrn;Kalrn;Kalrn;Kalrn;Kalrn;Kalrn;Kalrn,-3083;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,18,22,545156,ENSMUSG00000061751,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21918,cg00356067,-0.0000188,0.0000132,-1.42053405,0.156457258,loss,ns,0.0000138,0.0000225,0.612642916,0.540561622,pos,ns,0.010706705,0.006588595,1.625036185,0.105171058,pos,ns,0.978103757,-0.000490345,0.000226581,-2.164102129,0.03121987,neg,ns,0.682832012,Zfp821,Zfp821_fiveUTR,8,109717749,109717798,109717797,109717798,50,+,TTGTGACCACCAGGGGATCAAGTATTTGCTGGGCTAGAAGAGCAAGCCCG,5' UTR,8,109705546,109724932,19387,1,Zfp821-206,12203,Zfp821-206;Zfp821-201;Zfp821-204;Zfp821-203;Zfp821-205;Zfp821-202,Zfp821;Zfp821;Zfp821;Zfp821;Zfp821;Zfp821,0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,2,75871,ENSMUSG00000031728,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22778,cg13158966,-0.000000665,0.00000155,-0.429848602,0.667604411,loss,ns,-0.00000161,0.00000263,-0.612339128,0.540762293,neg,ns,0.001055369,0.000770029,1.370557477,0.171504523,pos,ns,0.765724423,-0.0000226,0.0000265,-0.85211746,0.394806715,neg,ns,0.963513318,Cit,Cit_Exon,5,115938730,115938779,115938730,115938731,50,-,CGTAGAGAAAACAGACTGAAGGATGACATCCAGACAAAATCCCAACAGAT,"Exon (Cit-201/Cit, exon 17 of 47)",5,115845644,116006353,160710,1,Cit-212,93086,Cit-212;Cit-201;Cit-202;Cit-203;Cit-213;Cit-216;Cit-211,Cit;Cit;Cit;Cit;Cit;Cit;Cit,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,9,12704,ENSMUSG00000029516,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27840,cg24112463,0.00000075,0.00000243,0.309052592,0.757489126,gain,ns,-0.00000252,0.00000412,-0.612201237,0.540853391,neg,ns,-0.003483766,0.001208224,-2.883378453,0.004209528,neg,ns,2.37576657,0.000150041,0.0000416,3.611037946,0.000355573,pos,ns,0.950571137,Esrrg,Esrrg_Exon,1,188198669,188198718,188198669,188198670,50,+,CGTTTGAGGATGAACTTGTCTATGCAGACGATTATATAATGGACGAAGAC,"Exon (Esrrg-203/Esrrg, exon 7 of 8)",1,187609029,188214386,605358,1,Esrrg-203,589640,Esrrg-203;Esrrg-201;Esrrg-202,Esrrg;Esrrg;Esrrg,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,60,26381,ENSMUSG00000026610,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2474,cg21676326,-0.0000112,0.00000304,-3.675519065,0.000279632,loss,ns,0.00000316,0.00000516,0.612015577,0.54097606,pos,ns,-0.003375652,0.001512602,-2.231684983,0.026350339,neg,ns,1.579213799,0.0000398,0.000052,0.765255007,0.444701911,pos,ns,0.927997905,Gm12028,Gm12028_Intergenic_upstream,11,19764714,19764763,19764714,19764715,50,+,CGCCTCTCACGTTTTTAAATCTGGGGGTTTATGCTTTAATGGCTTTGATG,Distal Intergenic,11,19749419,19750066,648,2,Gm12028-201,-14648,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,3,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7344,cg06400713,-0.0000136,0.00000309,-4.399829,0.0000149,loss,ns,0.00000322,0.00000526,0.611940195,0.541025871,pos,ns,0.000796473,0.001539754,0.517273264,0.605334297,pos,ns,0.218004719,-0.00009,0.000053,-1.700435841,0.090051885,neg,ns,0.926196426,Gm8176,Gm8176_Intron,1,42352564,42352613,42352564,42352565,50,+,CGGCCCAAAGTCCTAGGAGTTAATTCCCTGTACTGCATGAGGTGTCAGGG,"Intron (Gm28140-201/Gm28140-201, intron 1 of 2)",1,42179290,42180388,1099,2,Gm8176-201,-172176,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,17,666582,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1985,cg01671966,-0.0000159,0.00000566,-2.802247501,0.005394172,loss,ns,-0.00000588,0.00000961,-0.611906078,0.541048415,neg,ns,0.001967442,0.002816008,0.698663487,0.485286158,pos,ns,0.314002096,-0.00015403,0.0000968,-1.590524514,0.112735861,neg,ns,0.948138726,Gm7670,Gm7670_Intergenic_downstream,18,16826722,16826771,16826722,16826723,50,-,CGCATGGCTATATGGGTAATTTTGAACAAGTGGATCTTTCTCCAACCTGA,Distal Intergenic,18,16839317,16839957,641,2,Gm7670-201,13235,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,665519,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22628,cg16936032,-0.0000194,0.00000347,-5.582359204,5.18E-08,loss,yes,-0.00000361,0.00000589,-0.611759285,0.54114542,neg,ns,-0.003132498,0.001726452,-1.814413612,0.070580589,neg,ns,1.15131472,0.00000946,0.0000594,0.15938385,0.873470254,pos,ns,0.940899566,Sox6,Sox6_threeUTR,7,115474300,115474349,115474300,115474301,50,-,CGGCAACTGTGAGGCAAGCCCACACGAGTCGAAACAGATGACTTTTGTTC,3' UTR,7,115470872,116031047,560176,2,Sox6-210,556698,Sox6-210;Sox6-201;Sox6-202;Sox6-204;Sox6-205;Sox6-203;Sox6-212;Sox6-206,Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,57,20679,ENSMUSG00000051910,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25410,cg24251659,-0.000013,0.00000385,-3.387580972,0.000796104,loss,ns,0.000004,0.00000653,0.611610468,0.541243772,pos,ns,0.001864329,0.00191373,0.974185678,0.330723902,pos,ns,0.480534416,-0.0000467,0.0000658,-0.709621636,0.478472196,neg,ns,0.945081344,Cux1,Cux1_Intron,5,136293121,136293170,136293121,136293122,50,-,CGAACTGTGCATTCAGAAGGACAAGTTGCTGAAACAAAATGACAGGGTAC,"Intron (Gm16599-201/Gm16599-201, intron 1 of 4)",5,136248135,136360018,111884,2,Cux1-205,66848,Cux1-205;Cux1-207;Cux1-211;Cux1-203;Cux1-213;Cux1-201;Cux1-204;Cux1-209;Cux1-212;Cux1-206;Cux1-202,Cux1;Cux1;Cux1;Cux1;Cux1;Cux1;Cux1;Cux1;Cux1;Cux1;Cux1,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,21,13047,ENSMUSG00000029705,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1008,cg16717299,-0.00000146,0.00000733,-0.199548462,0.841964565,loss,ns,0.00000762,0.0000125,0.611555777,0.541279919,pos,ns,-0.002835758,0.003648345,-0.777272388,0.437590815,neg,ns,0.358931802,0.000054,0.000125466,0.430120371,0.66740693,pos,ns,0.851858814,Cntn5,Cntn5_Intron,9,10657402,10657451,10657450,10657451,50,-,CCCTCTTGTAAAATATGACAGCCTGACATTTTCTTTAATTACAAGACCCG,"Intron (Cntn5-204/Cntn5, intron 1 of 20)",9,9660891,10904726,1243836,2,Cntn5-204,247275,Cntn5-204;Cntn5-202;Cntn5-203,Cntn5;Cntn5;Cntn5,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,244682,ENSMUSG00000039488,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14439,cg08781228,-0.00000208,0.00000152,-1.373623974,0.170550968,loss,ns,0.00000157,0.00000257,0.611391874,0.541388255,pos,ns,-0.000018,0.000754065,-0.023911133,0.980938878,neg,ns,0.008358053,-0.000015,0.0000259,-0.576856259,0.564455206,neg,ns,0.965166826,Crk,Crk_Exon,11,75692548,75692597,75692548,75692549,50,-,CGGCTCTGATTGGAGGTAACCAGGAGGGTTCCCACCCACAGCCACTGGGT,"Exon (Crk-201/Crk, exon 2 of 3)",11,75679259,75706065,26807,1,Crk-201,13289,Crk-201;Crk-204;Crk-203;Crk-202;Crk-205,Crk;Crk;Crk;Crk;Crk,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,7,12928,ENSMUSG00000017776,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9327,cg17184510,-0.00000345,0.00000528,-0.652502194,0.514560807,loss,ns,0.00000549,0.00000898,0.611371757,0.541401552,pos,ns,-0.001344715,0.002629507,-0.511394124,0.609439159,neg,ns,0.215069644,0.0000745,0.0000904,0.823678558,0.410755452,pos,ns,0.88730687,Zdhhc9,Zdhhc9_Exon,X,48183107,48183156,48183155,48183156,50,+,TTCCTCTTTCCAACACAATTCCCCACCCAGGGGCAGTGATGGTCGAAGCG,"Exon (Zdhhc9-201/Zdhhc9, exon 5 of 10)",20,48171969,48208687,36719,2,Zdhhc9-201,25531,Zdhhc9-201;Zdhhc9-202;Zdhhc9-203,Zdhhc9;Zdhhc9;Zdhhc9,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,208884,ENSMUSG00000036985,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
869,cg12240124,-0.0000334,0.00000802,-4.16307635,0.0000407,loss,ns,0.00000833,0.0000136,0.61134983,0.541416047,pos,ns,-0.006065618,0.003989954,-1.520222558,0.129474314,neg,ns,0.88781638,-0.0000121,0.000137214,-0.088493243,0.929541794,neg,ns,0.099309198,Zbtb10,Zbtb10_Promoter,3,9249905,9249954,9249905,9249906,50,+,CGACTGGAGTTATCTGATTGGCTGCTGGTGATGTAACACCCATGTCAATA,Promoter (<=1kb),3,9250602,9285333,34732,1,Zbtb10-201,-648,Zbtb10-201,Zbtb10,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,4,9,229055,ENSMUSG00000069114,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18628,cg00618479,0.0000801,0.0000106,7.55307991,4.81E-13,gain,yes,-0.000011,0.000018,-0.61133082,0.541428612,neg,ns,0.020671432,0.005276195,3.917867487,0.000109948,pos,ns,3.958814104,-0.000508756,0.000181448,-2.803866862,0.005367833,neg,ns,0.46987276,Hoxb3,Hoxb3_Exon,11,96344616,96344665,96344664,96344665,50,+,CCACCCTCACCAAACAGATATTCCCCTGGATGAAAGAGTCGAGGCAAACG,"Exon (Hoxb3-202/Hoxb3, exon 3 of 4)",11,96323326,96347930,24605,1,Hoxb3-202,21290,Hoxb3-202;Hoxb3-203;Hoxb3-204;Hoxb3-201,Hoxb3;Hoxb3;Hoxb3;Hoxb3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,19,15410,ENSMUSG00000048763,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
14726,cg17073188,-0.0000133,0.00000457,-2.905806477,0.003926778,loss,ns,0.00000475,0.00000777,0.61123879,0.54148945,pos,ns,-0.000672664,0.002275709,-0.295584304,0.767745449,neg,ns,0.114782749,-0.000115486,0.0000783,-1.475638263,0.141055986,neg,ns,0.871878715,Rnf165,Rnf165_Exon,18,77462340,77462389,77462340,77462341,50,+,CGGCTCCCAGTTGTGTCTCAATGTCCACTCGGCAGATGGGGCATTTCTTG,"Exon (Rnf165-201/Rnf165, exon 8 of 8)",18,77456110,77565136,109027,2,Rnf165-201,102747,Rnf165-201;Rnf165-202;Rnf165-207;Rnf165-204,Rnf165;Rnf165;Rnf165;Rnf165,0;0;4759;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,21,225743,ENSMUSG00000025427,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25113,cg14734033,0.0000255,0.0000187,1.365917359,0.172955026,gain,ns,0.0000194,0.0000317,0.611146618,0.541550383,pos,ns,0.027034716,0.00929062,2.909893455,0.00387716,pos,ns,2.411486254,-0.000710154,0.000319504,-2.222678257,0.026958639,neg,ns,0.242122745,Ahdc1,Ahdc1_Intron,4,133013652,133013701,133013700,133013701,50,+,GCACAAGGAGGGACCCTTGGGGGGCCTGTGCCTGTCTGGCTGGGCAGGCG,"Intron (Ahdc1-210/Ahdc1, intron 2 of 3)",4,133011260,133060820,49561,1,Ahdc1-210,2392,Ahdc1-210;Ahdc1-203;Ahdc1-204;Ahdc1-205;Ahdc1-207;Ahdc1-211;Ahdc1-209;Ahdc1-206;Ahdc1-201,Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,35,49,230793,ENSMUSG00000037692,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U4,Pr-F
7798,cg01513560,0.00000641,0.00000428,1.497275181,0.135339139,gain,ns,-0.00000445,0.00000728,-0.61089441,0.541717133,neg,ns,-0.002247253,0.002131932,-1.054092065,0.292661633,neg,ns,0.533634209,-0.0000645,0.0000733,-0.879181131,0.379984048,neg,ns,0.904459297,Arhgap15,Arhgap15_Intron,2,44341443,44341492,44341491,44341492,50,+,TGTGACGGCTAGAACAGGGCCAGCTCTGGACGGCACATGTTCAAGTGACG,"Intron (Arhgap15-203/Arhgap15, intron 13 of 14)",2,43748824,44395953,647130,1,Arhgap15-203,592619,Arhgap15-203;Arhgap15-202;Arhgap15-201,Arhgap15;Arhgap15;Arhgap15,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,72,78,76117,ENSMUSG00000049744,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25721,cg06793066,-0.000001,0.00000332,-0.301549173,0.76319794,loss,ns,-0.00000344,0.00000564,-0.610784654,0.541789707,neg,ns,0.00650547,0.001651637,3.938800463,0.000101203,pos,ns,3.994806402,-0.00029811,0.0000568,-5.248451247,0.000000285,neg,yes,0.844464012,Fam20c,Fam20c_threeUTR,5,138766633,138766682,138766681,138766682,50,-,GAAGTCGGGGGGCACGCAGCTGAAGCTCATCATGACCTTCCAGAATTACG,3' UTR,5,138754514,138810077,55564,1,Fam20c-201,12119,Fam20c-201;Fam20c-203,Fam20c;Fam20c,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,2,80752,ENSMUSG00000025854,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2337,cg22572489,0.0000206,0.00000506,4.070236575,0.0000597,gain,ns,-0.00000524,0.00000859,-0.610665898,0.541868238,neg,ns,0.001535537,0.00251597,0.610316406,0.542099383,pos,ns,0.265921087,-0.000170064,0.0000865,-1.965518607,0.050246673,neg,ns,0.03933194,Meis1,Meis1_Promoter,11,19020584,19020633,19020584,19020585,50,+,CGCATTGGCTGCGGGGAAAATCAATTATCAAATAATCGATCAGCAGGGAG,Promoter (1-2kb),11,18879817,19018985,139169,2,Meis1-206,-1599,Meis1-206;Meis1-202;Meis1-209;Meis1-201;Meis1-208;Meis1-207;Meis1-204;Meis1-205,Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1,0;0;0;0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,8,88,17268,ENSMUSG00000020160,conserved gene but different region,11,19020431,19020675,245,*,245,17,0.587755102,0.809052059,0.069387755,1.25E-10,CpGisland,TRUE,U2,Pr-W
6760,cg03156304,0.00000449,0.00000181,2.478327984,0.013732051,gain,ns,-0.00000188,0.00000308,-0.610616479,0.54190092,neg,ns,0.00083479,0.000901526,0.925974436,0.355179559,pos,ns,0.449552036,0.0000274,0.000031,0.882496927,0.378191934,pos,ns,0.041454698,Lhx2,Lhx2_Intron,2,38348025,38348074,38348073,38348074,50,-,AAACCAGCGCGCACAATGAAGTAGTTGCCTGCAGCGTCAATTAGTTGGCG,"Intron (Lhx2-203/Lhx2, intron 1 of 4)",2,38339281,38369199,29919,1,Lhx2-203,8744,Lhx2-203;Lhx2-204;Lhx2-202;Lhx2-201;Lhx2-207;Lhx2-205,Lhx2;Lhx2;Lhx2;Lhx2;Lhx2;Lhx2,0;0;0;0;-3694;-4458,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,33,16870,ENSMUSG00000000247,mapped to different genes,2,38347822,38348178,357,*,357,27,0.518207283,1.126841244,0.075630252,1.55E-17,CpGisland,TRUE,U3,Pr-B
16099,cg03454056,-0.00000976,0.00000235,-4.152268972,0.0000426,loss,ns,-0.00000244,0.00000399,-0.610532071,0.541956742,neg,ns,0.000474282,0.00117035,0.405247738,0.685574939,pos,ns,0.163945066,-0.0000663,0.0000402,-1.64639272,0.100696292,neg,ns,0.952760173,Bnc2,Bnc2_Intron,4,84404108,84404157,84404156,84404157,50,+,CCTGTGTGACACCTGTTTTTGTCTCCTCTGATCCTACGACAGGTTTTCCG,"Intron (Bnc2-201/Bnc2, intron 5 of 7)",4,84275095,84675034,399940,2,Bnc2-201,270877,Bnc2-201;Bnc2-202;Bnc2-214;Bnc2-215;Bnc2-206;Bnc2-211;Bnc2-205;Bnc2-217;Bnc2-207;Bnc2-212;Bnc2-203;Bnc2-209;Bnc2-221;Bnc2-204,Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,91,242509,ENSMUSG00000028487,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4589,cg20314902,0.00000242,0.00000322,0.752396207,0.452383748,gain,ns,0.00000334,0.00000547,0.610427293,0.54202604,pos,ns,0.001449252,0.001602516,0.90436039,0.366506596,pos,ns,0.435918206,-0.0000305,0.0000551,-0.553225053,0.580508058,neg,ns,0.910750925,Odf2,Odf2_Exon,2,29893486,29893535,29893486,29893487,50,-,CGGCGGAGTGTCCGGGTGAAAACCAAGGTACCTTGGATGCCCCCTGGAAA,"Exon (Odf2-212/Odf2, exon 4 of 5)",2,29889221,29901107,11887,1,Odf2-212,4265,Odf2-212;Odf2-219;Odf2-211;Odf2-208;Odf2-205;Odf2-204;Odf2-225;Odf2-213;Odf2-217;Odf2-206;Odf2-203;Odf2-224;Odf2-218;Odf2-202;Odf2-201;Odf2-220;Odf2-207;Odf2-210;Odf2-209;Odf2-215,Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,8,18286,ENSMUSG00000026790,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
960,cg15346475,-0.00011002,0.0000152,-7.215283708,4.16E-12,loss,yes,-0.0000158,0.0000259,-0.610413513,0.542035154,neg,ns,-0.007016432,0.007589149,-0.924534872,0.355927005,neg,ns,0.44863906,-0.001845655,0.00026099,-7.071739404,1.02E-11,neg,yes,0.596651654,Fads2,Fads2_Exon,19,10064715,10064764,10064715,10064716,50,-,CGGCTTCTCCTGGTATTCAATGCCATGCTTGGCACATAGAGACTTCACCA,"Exon (Fads2-201/Fads2, exon 11 of 12)",19,10062765,10101746,38982,2,Fads2-201,36982,Fads2-201;Fads2-203;Fads2-202;Fads3-201,Fads2;Fads2;Fads2;Fads3,0;0;23952;23146,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,56473,ENSMUSG00000024665,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16005,cg00583683,-0.0000519,0.00000965,-5.376510917,0.00000015,loss,yes,-0.00001,0.0000164,-0.610392644,0.542048957,neg,ns,-0.007714533,0.004800667,-1.606971099,0.109078746,neg,ns,0.962259862,0.0000106,0.000165095,0.063942034,0.949057594,pos,ns,0.868229202,Gm12416,Gm12416_Intergenic_downstream,4,84152149,84152198,84152197,84152198,50,-,CCCTTTAGACTAATTGCAGATTTGCAAAAACTGCTGAGAGTGTAGAACCG,Distal Intergenic,4,84104895,84105902,1008,1,Gm12416-201,47303,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,11,668010,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24137,cg25041838,0.00000456,0.00000285,1.597142927,0.111252659,gain,ns,-0.00000296,0.00000485,-0.610312568,0.542101922,neg,ns,-0.0000128,0.001420778,-0.009026784,0.992803572,neg,ns,0.003136669,-0.000129499,0.0000489,-2.650377179,0.008452877,neg,ns,0.910111272,Ggact,Ggact_Intron,14,122882647,122882696,122882647,122882648,50,-,CGGGCCCAATTTTAGGCAGAGGGTTTAAATAGCTTATTTATTATTTTGTA,"Intron (Pcca-201/Pcca, intron 22 of 23)",14,122816223,122913120,96898,2,Ggact-202,30424,Ggact-202;Pcca-201;Pcca-213;Pcca-210;Pcca-203;Pcca-206;Pcca-205,Ggact;Pcca;Pcca;Pcca;Pcca;Pcca;Pcca,0;0;0;0;0;0;-4207,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,3,223267,ENSMUSG00000041625,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17235,cg24205097,0.000000377,0.00000362,0.103985257,0.91724829,gain,ns,-0.00000376,0.00000616,-0.610118077,0.542230574,neg,ns,-0.002078286,0.001803546,-1.152333251,0.250072002,neg,ns,0.601934929,0.0000549,0.000062,0.885746898,0.376440482,pos,ns,0.100855836,Nog,Nog_Intergenic_downstream,11,89300205,89300254,89300253,89300254,50,-,GGGTCAAGTTTCAGCGGCACTCCGCCCCCAGGGTAGGTGTGAAAGACACG,Distal Intergenic,11,89300638,89302332,1695,2,Nog-201,2127,Nog-201,Nog,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,36,18121,ENSMUSG00000048616,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
2197,cg15303324,-0.0000202,0.00000567,-3.555564427,0.000436017,loss,ns,-0.00000588,0.00000963,-0.610086905,0.542251196,neg,ns,-0.010641672,0.002822187,-3.770718744,0.000194905,neg,ns,3.710176261,0.0000319,0.0000971,0.328207839,0.742976093,pos,ns,0.855507599,Gm6369,Gm6369_Intron,3,18422040,18422089,18422040,18422041,50,-,CGATGATGAGCTACATCTGGCCTGTGAAATGAAAATAGCAAAACCTTTGA,"Intron (Gm30667-201/Gm30667-201, intron 2 of 5)",3,18533875,18534286,412,1,Gm6369-201,-111835,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,3,622921,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14648,cg27329286,0.0000262,0.00000656,3.988033583,0.0000832,gain,ns,0.0000068,0.0000111,0.610026718,0.542291012,pos,ns,-0.000678256,0.003265286,-0.207717321,0.835586084,neg,ns,0.078008802,0.0000924,0.000112293,0.822865426,0.411217045,pos,ns,0.711264161,Rbfox2,Rbfox2_Intron,15,77089425,77089474,77089473,77089474,50,+,AAGCTCGGTGAAGTACACAGCCTCAATTACTAGAGCGTGCAGCCACAACG,"Intron (1700109K24Rik-202/1700109K24Rik-202, intron 1 of 1)",15,77078990,77306928,227939,2,Rbfox2-204,217454,Rbfox2-204;Rbfox2-203;Rbfox2-202;Rbfox2-206;Rbfox2-208;Rbfox2-209;Rbfox2-201;Rbfox2-211;Rbfox2-215;Rbfox2-207,Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,20,93686,ENSMUSG00000033565,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11999,cg05742411,0.0000249,0.0000118,2.113106684,0.035390582,gain,ns,-0.0000122,0.00002,-0.60992575,0.542357811,neg,ns,0.001322025,0.005865437,0.225392423,0.821822519,pos,ns,0.085221963,0.0000233,0.000201712,0.115428334,0.908180354,pos,ns,0.836006394,Slc4a10,Slc4a10_Intron,2,62239632,62239681,62239680,62239681,50,+,CTCATCTCTGTACCTCCCTCATCTCCTACCCTTTGGGTACTCTAAATGCG,"Intron (Slc4a10-202/Slc4a10, intron 6 of 25)",2,62046462,62326730,280269,1,Slc4a10-202,193170,Slc4a10-202;Slc4a10-206;Slc4a10-201;Slc4a10-203,Slc4a10;Slc4a10;Slc4a10;Slc4a10,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,12,94229,ENSMUSG00000026904,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20785,cg05184712,-0.00000188,0.00000267,-0.703883472,0.482033715,loss,ns,0.00000276,0.00000453,0.609911922,0.542366959,pos,ns,0.007313937,0.001327966,5.507624288,7.65E-08,pos,ns,7.116573339,-0.000244486,0.0000457,-5.353478498,0.000000168,neg,yes,0.915988252,Tlk2,Tlk2_Exon,11,105210554,105210603,105210602,105210603,50,+,GGAAGCGCGCCAGGAACCAGCCCTGGCAGAAGTGTTCCACCAGTTGCACG,"Exon (Tlk2-204/Tlk2, exon 6 of 22)",11,105178807,105283959,105153,1,Tlk2-203,31747,Tlk2-203;Tlk2-206;Tlk2-204;Tlk2-202;Tlk2-201;Tlk2-209;Tlk2-207;Tlk2-211;Tlk2-205;Tlk2-212,Tlk2;Tlk2;Tlk2;Tlk2;Tlk2;Tlk2;Tlk2;Tlk2;Tlk2;Tlk2,0;29808;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,5,24086,ENSMUSG00000020694,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13417,cg13602621,-0.0000238,0.0000142,-1.676722479,0.094604824,loss,ns,-0.0000147,0.0000241,-0.609910991,0.542367576,neg,ns,-0.019531699,0.007065218,-2.764486447,0.006042583,neg,ns,2.21877741,0.000507111,0.000242972,2.087116168,0.037694177,pos,ns,0.768817439,Myo3b,Myo3b_Intron,2,70425835,70425884,70425883,70425884,50,+,TCAGGATGTCTGCCTTCACGGTGAATAATTGATGTGGTTTATCAAAGACG,"Intron (Myo3b-201/Myo3b, intron 33 of 34)",2,70039126,70429195,390070,1,Myo3b-201,386709,Myo3b-201;Myo3b-203,Myo3b;Myo3b,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,6,329421,ENSMUSG00000042064,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9178,cg26538921,0.000000716,0.00000205,0.34926418,0.727128112,gain,ns,-0.00000212,0.00000348,-0.609896584,0.542377108,neg,ns,0.000547128,0.001020441,0.536167792,0.592227102,pos,ns,0.227511722,-0.0000387,0.0000351,-1.103633097,0.270608279,neg,ns,0.956945916,Cadm1,Cadm1_Intergenic_upstream,9,47386643,47386692,47386643,47386644,50,+,CGGATCAGATAATGTACACTTAGCGAGTGCACAAATAATGTGAATCAGGG,Distal Intergenic,9,47530173,47853385,323213,1,Cadm1-204,-143481,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,18,77,54725,ENSMUSG00000032076,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23303,cg11110522,-0.00000155,0.00000151,-1.027278655,0.305090154,loss,ns,-0.00000156,0.00000256,-0.609851837,0.542406713,neg,ns,0.000468154,0.000749476,0.624641878,0.532665588,pos,ns,0.273545359,-0.0000199,0.0000258,-0.773219512,0.439981663,neg,ns,0.972072745,Eri3,Eri3_Intron,4,117665938,117665987,117665986,117665987,50,-,TACCAGCGCTTAATAAACACTTTATGAGGATTTTTTTAAAAACATCTTCG,"Intron (Eri3-201/Eri3, intron 8 of 8)",4,117550365,117674297,123933,1,Eri3-201,115573,Eri3-201;Eri3-206;Eri3-203,Eri3;Eri3;Eri3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,82,97,140546,ENSMUSG00000033423,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16430,cg05778253,-0.00000783,0.00000557,-1.404895732,0.161053526,loss,ns,0.00000577,0.00000947,0.609756284,0.542469936,pos,ns,-0.003005876,0.002774186,-1.083516463,0.279421254,neg,ns,0.553740563,0.0000543,0.0000954,0.569215457,0.569622121,pos,ns,0.904598055,Cntln,Cntln_Intron,4,84987619,84987668,84987667,84987668,50,-,ATCTTACTATGGCTATGTGTGCAAGATAAGTTCCCCAAAGAACCTAATCG,"Intron (Cntln-201/Cntln, intron 8 of 25)",4,84884309,85131921,247613,1,Cntln-201,103310,Cntln-201;Cntln-204,Cntln;Cntln,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,25,338349,ENSMUSG00000038070,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12588,cg03426775,4.33E-08,0.00000214,0.020231229,0.983871931,gain,ns,0.00000222,0.00000364,0.609631789,0.542552314,pos,ns,-0.000984802,0.001065931,-0.923889248,0.356262546,neg,ns,0.448229832,0.0000224,0.0000367,0.612036784,0.540962048,pos,ns,0.949349688,Astn2,Astn2_Exon,4,65581619,65581668,65581667,65581668,50,+,AGCTGCTCCTTGCCTGGCCGGCGGCAAAGGTGACAGGTAGATGGACAGCG,"Exon (Astn2-202/Astn2, exon 16 of 22)",4,65380803,66404483,1023681,2,Astn2-202,822815,Astn2-202;Astn2-201,Astn2;Astn2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,7,56079,ENSMUSG00000028373,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4506,cg25895496,-0.0000925,0.0000157,-5.886502858,1.02E-08,loss,yes,0.0000163,0.0000267,0.609533918,0.542617079,pos,ns,-0.014593391,0.007819694,-1.86623543,0.062952546,neg,ns,1.2009867,0.000235237,0.000268919,0.874752252,0.382385926,pos,ns,0.763870933,Ntm,Ntm_Intron,9,29318775,29318824,29318823,29318824,50,+,TTATTGGGACTGGAACAATTTGTCTAAAGCTGTAATTTTAACTACCTCCG,"Intron (Ntm-201/Ntm, intron 2 of 7)",9,28994750,29963129,968380,2,Ntm-201,644305,Ntm-201;Ntm-203;Ntm-202;Ntm-204;Ntm-210,Ntm;Ntm;Ntm;Ntm;Ntm,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,27,32,235106,ENSMUSG00000059974,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17102,cg19226790,-0.00000155,0.00000361,-0.429919098,0.667553183,loss,ns,-0.00000374,0.00000614,-0.609524259,0.542623471,neg,ns,0.000278194,0.00179755,0.154762765,0.87710906,pos,ns,0.056946403,0.00000775,0.0000618,0.125379825,0.900304129,pos,ns,0.913449508,Msi2,Msi2_Intron,11,88421940,88421989,88421988,88421989,50,+,TCATGATATTAAAGCCGTGTCAATTAATTTCTCCCCCTGCTTGATAAACG,"Intron (Msi2-203/Msi2, intron 7 of 13)",11,88339382,88718229,378848,2,Msi2-203,296240,Msi2-203;Msi2-201;Msi2-207,Msi2;Msi2;Msi2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,21,36,76626,ENSMUSG00000069769,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16328,cg19687940,0.00000297,0.00000237,1.25158183,0.211665872,gain,ns,-0.00000245,0.00000403,-0.609481287,0.542651908,neg,ns,-0.001608847,0.001179912,-1.363531091,0.173704554,neg,ns,0.760188796,0.0000724,0.0000406,1.785208041,0.075205177,pos,ns,0.890598307,Exoc6b,Exoc6b_Exon,6,84746907,84746956,84746955,84746956,50,-,CAAGTCGATGAAGGCCAACTGCAGCGTGTCCTCCTGGAACCCAGGCACCG,"Exon (Exoc6b-203/Exoc6b, exon 20 of 22)",6,84618487,85069513,451027,2,Exoc6b-203,322557,Exoc6b-203,Exoc6b,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,8,75914,ENSMUSG00000033769,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
160,cg24901288,0.0000018,0.00000329,0.548344801,0.583849831,gain,ns,-0.0000034,0.00000558,-0.60944638,0.54267501,neg,ns,0.000151946,0.001635559,0.092901738,0.926041635,pos,ns,0.033369487,0.0000133,0.0000562,0.237150134,0.812696962,pos,ns,0.940232732,Gria4,Gria4_Exon,9,4427077,4427126,4427125,4427126,50,+,ATTTGTTTTTCAGCTTGTCTAAGACGCCTGCCTCACTGAGTTTCAAAACG,"Exon (Gria4-202/Gria4, exon 15 of 17)",9,4417896,4796142,378247,2,Gria4-202,369016,Gria4-202;Gria4-204;Gria4-201,Gria4;Gria4;Gria4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,16,18,14802,ENSMUSG00000025892,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16173,cg05043743,-0.000065,0.00000876,-7.415750158,1.17E-12,loss,yes,-0.00000907,0.0000149,-0.609277984,0.54278646,neg,ns,0.009261773,0.004361586,2.123487432,0.034504835,pos,ns,1.462120047,-0.000295688,0.000149995,-1.971326404,0.049575641,neg,ns,0.902716307,Bnc2,Bnc2_Intron,4,84551535,84551584,84551583,84551584,50,-,CAAAACTGTCCCTGTTCTTGCCAAAATAATAAAAATGACGCTCCACATCG,"Intron (Bnc2-201/Bnc2, intron 2 of 7)",4,84275095,84675034,399940,2,Bnc2-201,123450,Bnc2-201;Bnc2-202;Bnc2-214;Bnc2-215;Bnc2-206;Bnc2-211;Bnc2-217;Bnc2-207;Bnc2-203;Bnc2-209;Bnc2-221;Bnc2-204;Bnc2-210,Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,91,242509,ENSMUSG00000028487,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12999,cg10106415,-0.0000365,0.00000481,-7.5946929,3.67E-13,loss,yes,-0.00000498,0.00000817,-0.60926958,0.542792022,neg,ns,0.000117085,0.002394645,0.048894525,0.961034839,pos,ns,0.017260868,0.0000442,0.0000824,0.536413786,0.592057322,pos,ns,0.806883082,Per1,Per1_Exon,11,69104731,69104780,69104779,69104780,50,+,GGAGAGTGTGGTGTCCGTCACCAGTCAGTGTAGCTTCAGCTCCACCATCG,"Exon (Per1-202/Per1, exon 17 of 18)",11,69095217,69106458,11242,1,Per1-202,9514,Per1-202;Per1-201;Per1-204;Per1-206;Per1-205;Per1-203,Per1;Per1;Per1;Per1;Per1;Per1,0;0;4579;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,18626,ENSMUSG00000020893,conserved gene and region,11,69104619,69104844,226,*,226,14,0.637168142,0.622344611,0.061946903,0.000000033,CpGisland,TRUE,U10,Tr-S
23481,cg22493850,-0.0000928,0.0000112,-8.251715121,4.53E-15,loss,yes,0.0000116,0.0000191,0.609232438,0.542816605,pos,ns,-0.014664537,0.005594512,-2.62123616,0.009193166,neg,ns,2.036534889,0.000398886,0.000192395,2.073266552,0.038973228,pos,ns,0.857349788,Gm9267,Gm9267_Intergenic_upstream,12,118564644,118564693,118564692,118564693,50,-,GCCACACTGAAGCTACATTACAGAGCCATTCAGCTTGGCAGTTAAGTACG,Distal Intergenic,12,118602677,118603080,404,1,Gm9267-201,-38033,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,20,668611,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27789,cg24941090,-0.00000551,0.0000086,-0.640476656,0.52233589,loss,ns,0.0000089,0.0000146,0.609128662,0.542885295,pos,ns,-0.005768243,0.004281759,-1.347166767,0.178910421,neg,ns,0.747364361,0.000133716,0.000147249,0.908089436,0.36453636,pos,ns,0.846334541,Spata17,Spata17_Intron,1,187077459,187077508,187077459,187077460,50,-,CGACAAGCTGTGACCATTCCACACACTTCATTAGCTGCCATAATTAGCCT,"Intron (Spata17-205/Spata17, intron 9 of 10)",1,187044648,187215465,170818,2,Spata17-205,137957,Gm15508-201;Spata17-205;Spata17-201,Gm15508;Spata17;Spata17,-4124;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,6,74717,ENSMUSG00000026611,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3958,cg20826688,-0.00000531,0.00000577,-0.919554657,0.358520494,loss,ns,0.00000597,0.00000981,0.609105437,0.542900668,pos,ns,0.000955917,0.002873301,0.332689475,0.73959356,pos,ns,0.131006879,-0.0000738,0.0000988,-0.746559764,0.455895144,neg,ns,0.548067517,Gm7847,Gm7847_Intergenic_upstream,18,25919181,25919230,25919229,25919230,50,+,CACTATATAGAAGTTGTGCTTACCACTGAAAATTAAAGCTACTGAAAGCG,Distal Intergenic,18,25823581,25824357,777,2,Gm7847-201,-94824,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,22,665916,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3337,cg08095776,-0.0000502,0.00000919,-5.459368375,9.81E-08,loss,yes,0.00000951,0.0000156,0.609052563,0.542935668,pos,ns,-0.011146497,0.004572958,-2.437480916,0.015351907,neg,ns,1.813837676,0.000141704,0.000157264,0.901062305,0.368254683,pos,ns,0.842373461,Pus10,Pus10_Exon,11,23718542,23718591,23718542,23718543,50,+,CGTTTCTGTTTCATGACGGGGTGTGTGCTGCCAGGAAGGCCCTTTGCAAT,Promoter (<=1kb),11,23718556,23731398,12843,1,Pus10-206,0,Pus10-203;Pus10-201;Pus10-202;Pus10-205;Pus10-206,Pus10;Pus10;Pus10;Pus10;Pus10,0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,74467,ENSMUSG00000020280,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25873,cg14264409,0.00000078,0.00000276,0.282890435,0.777449629,gain,ns,-0.00000285,0.00000469,-0.608990357,0.542976846,neg,ns,0.000639692,0.001372874,0.465950979,0.641577804,pos,ns,0.192750669,-0.0000321,0.0000472,-0.680933309,0.496421991,neg,ns,0.94194055,Morc4,Morc4_Intron,X,139835453,139835502,139835453,139835454,50,+,CGGAGCTGGGCAACCATGTCCGAGAGACAGTGCTCCTGAAAATTCAAAAC,"Intron (Morc4-201/Morc4, intron 13 of 15)",20,139821632,139871654,50023,2,Morc4-201,36152,Morc4-201;Morc4-204;Morc4-202;Morc4-210;Morc4-208,Morc4;Morc4;Morc4;Morc4;Morc4,0;0;0;0;19436,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,7,75746,ENSMUSG00000031434,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8321,cg21247078,-0.000000345,0.000000579,-0.596091881,0.551548837,loss,ns,0.000000599,0.000000984,0.608980208,0.542983565,pos,ns,0.00062662,0.000288304,2.173472055,0.030501495,pos,ns,1.515678867,-0.0000307,0.00000991,-3.099572283,0.002115787,neg,ns,0.013489298,Rras,Rras_Exon,7,45018096,45018145,45018144,45018145,50,-,CGAGACACACAAGCTGGTGGTCGTGGGCGGCGGCGGCGTGGGCAAGAGCG,Promoter (<=1kb),7,45017961,45021647,3687,1,Rras-201,135,Rras-201;Rras-202;Rras-203;Scaf1-206;Scaf1-201;Scaf1-204;Scaf1-203;Scaf1-205;Scaf1-202,Rras;Rras;Rras;Scaf1;Scaf1;Scaf1;Scaf1;Scaf1;Scaf1,0;0;-1325;-3692;-1733;-1965;-4535;-2239;-3160,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,20130,ENSMUSG00000038387,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
21868,cg02396332,-0.00000212,0.00000327,-0.646817783,0.518228502,loss,ns,0.00000338,0.00000556,0.608815387,0.543092679,pos,ns,-0.001240377,0.001628678,-0.761585032,0.446886693,neg,ns,0.349802577,0.0000543,0.000056,0.969103229,0.333249167,pos,ns,0.948500152,Gm1943,Gm1943_Intergenic_downstream,8,109311006,109311055,109311006,109311007,50,+,CGAAAACTAATGATGTCTGCTTTCCAATTCATTAATAATGTGGAGTGGGG,Distal Intergenic,8,109340691,109340864,174,2,Gm1943-201,29809,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,28,384864,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11238,cg27242082,0.000150854,0.0000143,10.54275149,2.06E-22,gain,yes,0.0000148,0.0000243,0.608778085,0.543117375,pos,ns,0.020453549,0.00712161,2.872039888,0.004359427,pos,ns,2.360570625,0.000344148,0.000244912,1.405193425,0.160965084,pos,ns,0.518631749,Nr4a2,Nr4a2_Intron,2,57111185,57111234,57111185,57111186,50,+,CGAAATAAAGAGATCACTTAATTTGACCATAGGGAATTCTGTTCCACTTG,"Intron (Nr4a2-201/Nr4a2, intron 3 of 7)",2,57106830,57115038,8209,2,Nr4a2-201,3804,Nr4a2-201;Nr4a2-203;Nr4a2-206;Nr4a2-202;Nr4a2-205;Nr4a2-204,Nr4a2;Nr4a2;Nr4a2;Nr4a2;Nr4a2;Nr4a2,0;0;0;0;0;3139,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,25,18227,ENSMUSG00000026826,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
11201,cg04125700,0.0000158,0.00000417,3.788035887,0.000182373,gain,ns,-0.00000431,0.00000708,-0.608550395,0.543268131,neg,ns,0.003442628,0.002073546,1.660261601,0.097872956,pos,ns,1.009337296,-0.000161839,0.0000713,-2.269538324,0.023922267,neg,ns,0.073699923,Satb2,Satb2_fiveUTR,1,56971753,56971802,56971753,56971754,50,+,CGTTGAGTCATCAGGCAAAGTGAGTCCTTTTGGGTTGTCCTCGGTTTCCG,Promoter (<=1kb),1,56793981,56972502,178522,2,Satb2-201,700,Satb2-201;Satb2-202;Satb2-205;Satb2-203;Satb2-204,Satb2;Satb2;Satb2;Satb2;Satb2,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,9,33,212712,ENSMUSG00000038331,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
1385,cg19187110,0.000000302,0.00000834,0.036238445,0.971115555,gain,ns,0.00000862,0.0000142,0.608456434,0.54333035,pos,ns,0.002949936,0.004150251,0.710784972,0.477751912,pos,ns,0.320797567,-0.000453186,0.000142727,-3.17520204,0.001647866,neg,ns,0.606356143,Gm11847,Gm11847_Intergenic_downstream,4,12539623,12539672,12539623,12539624,50,+,CGGCTGTGTAATGCTTGACTGGTTTTATTGTTGTCTGTTCCCAGTGGGGA,Distal Intergenic,4,12232833,12233951,1119,1,Gm11847-201,306790,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,8,545592,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5726,cg18501647,0.0000162,0.0000135,1.201195899,0.230592158,gain,ns,0.0000139,0.0000229,0.608420696,0.543354016,pos,ns,0.022774011,0.006708716,3.394689965,0.000776445,pos,ns,3.109889045,-0.000870899,0.000230712,-3.774830572,0.000191858,neg,ns,0.273271723,Prrt1,Prrt1_Exon,17,34631889,34631938,34631889,34631890,50,+,CGCGGTGCTGACCACCATCTGTTGCTTCTGGCCTACTGGCATCATTGCCA,"Exon (Prrt1-201/Prrt1, exon 3 of 4)",17,34629533,34633126,3594,1,Prrt1-201,2356,Ppt2-209;Ppt2-201;Ppt2-210;Ppt2-204;Ppt2-205;Ppt2-202;Ppt2-207;Ppt2-203;Ppt2-208;Ppt2-206;Prrt1-201;Prrt1-202,Ppt2;Ppt2;Ppt2;Ppt2;Ppt2;Ppt2;Ppt2;Ppt2;Ppt2;Ppt2;Prrt1;Prrt1,-4454;-4512;-4741;-4404;-4364;-3850;-4961;-3379;-4463;-4739;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,260297,ENSMUSG00000015476,conserved gene and region,17,34631775,34631890,116,*,116,9,0.724137931,0.604166667,0.077586207,0.00000318,CpGisland,TRUE,U3,Pr-B
2229,cg05180115,-0.00000525,0.00000265,-1.979970135,0.048590943,loss,ns,-0.00000274,0.0000045,-0.608390855,0.543373777,neg,ns,0.000629853,0.001318679,0.477639718,0.633243256,pos,ns,0.198429427,-0.0000627,0.0000453,-1.382562812,0.167794133,neg,ns,0.968096016,Gm30341,Gm30341_Intergenic_upstream,3,18714060,18714109,18714108,18714109,50,+,TTTGAAGCTGTTTTAGTAGTTCCGCTATTCTGCTTAACATGTGGCACCCG,Distal Intergenic,3,18753077,18753365,289,1,Gm30341-201,-38968,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,17,23,102632201,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
528,cg26748720,-0.0000242,0.00000855,-2.827864809,0.00499094,loss,ns,0.00000883,0.0000145,0.608236566,0.543475956,pos,ns,-0.002847658,0.00425338,-0.669504611,0.503671974,neg,ns,0.297852214,-0.000113003,0.000146273,-0.772548867,0.44037801,neg,ns,0.88354497,Dlx6,Dlx6_Intron,6,6834902,6834951,6834950,6834951,50,-,CTTTGCTTTTGTGTGGAATCACTGTGTTGCCTGAACAGTGTATGATTTCG,"Intron (Dlx6os1-202/Dlx6os1-202, intron 1 of 1)",6,6863334,6868568,5235,1,Dlx6-202,-28432,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,36,13396,ENSMUSG00000029754,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15958,cg27189050,0.00000183,0.00000608,0.300820077,0.763753353,gain,ns,0.00000628,0.0000103,0.608140019,0.543539899,pos,ns,0.005637122,0.003025969,1.862914281,0.063419976,pos,ns,1.197773928,-0.000194375,0.000104063,-1.867865591,0.062724161,neg,ns,0.900214444,Gm50421,Gm50421_Intergenic_downstream,18,84003039,84003088,84003087,84003088,50,-,TTGTCACTTATTAATGACAATTAACTAGTAATCAGCAGTGAGACTCTTCG,Distal Intergenic,18,83987995,83988085,91,1,Gm50421-201,15093,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10182,cg15517120,0.00000194,0.00000117,1.650013321,0.099953017,gain,ns,0.00000121,0.00000199,0.608065951,0.543588957,pos,ns,0.000216403,0.000584432,0.370278972,0.7114275,pos,ns,0.147869351,0.0000121,0.0000201,0.600740666,0.548451686,pos,ns,0.02141955,Hoxa7,Hoxa7_fiveUTR,6,52217358,52217407,52217358,52217359,50,-,CGCCGTATATTTGCTAAAAAGCGCGTTCACATAATACGAAGAACTCATAA,5' UTR,6,52214491,52220393,5903,2,Hoxa7-205,2986,Gm28308-201;Hoxa3-201;Hoxa3-203;Hoxa7-205;Hoxa7-201;Hoxa7-202;Hoxa7-204;Hoxa7-203,Gm28308;Hoxa3;Hoxa3;Hoxa7;Hoxa7;Hoxa7;Hoxa7;Hoxa7,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,9,10,15404,ENSMUSG00000038236,conserved gene but different region,6,52217250,52217463,214,*,214,20,0.546728972,1.271538919,0.093457944,5.89E-15,CpGisland,TRUE,U3,Pr-B
20119,cg16264705,0.0000961,0.0000139,6.902747698,2.89E-11,gain,yes,-0.0000144,0.0000237,-0.608001531,0.543631627,neg,ns,0.013465724,0.00693017,1.94305815,0.05291417,pos,ns,1.276428011,-0.000377043,0.000238328,-1.582034058,0.114661475,neg,ns,0.063964106,Atp5g2,Atp5g2_fiveUTR,15,102672334,102672383,102672382,102672383,50,-,AATTTCCCGGGACCCCGAGCGACGCCATTACAGGAATGTAATTTTGCCCG,Promoter (<=1kb),15,102665801,102672352,6552,2,Atp5g2-203,0,Atp5g2-202;Atp5g2-201;Atp5g2-204;Atp5g2-203,Atp5g2;Atp5g2;Atp5g2;Atp5g2,-1207;-4585;-4591;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,8,18,67942,ENSMUSG00000062683,mapped to different genes,15,102672078,102672489,412,*,412,37,0.621359223,0.940117176,0.089805825,1.33E-26,CpGisland,TRUE,U1,Pr-A
25344,cg00946032,-0.00000113,0.000000877,-1.290859314,0.197714306,loss,ns,0.000000905,0.00000149,0.607888091,0.54370677,pos,ns,-0.000185447,0.00043637,-0.424975706,0.67114921,neg,ns,0.173180916,-0.00000113,0.000015,-0.075389329,0.939953577,neg,ns,0.981947264,Nav1,Nav1_Exon,1,135465890,135465939,135465938,135465939,50,+,TCTCGGCCAGGGACAGGGTGCTCCCCATTTGGGAGCCGCTGTACAGCTCG,"Exon (Nav1-201/Nav1, exon 10 of 30)",1,135434580,135585355,150776,2,Nav1-201,119416,Nav1-201;Nav1-202;Nav1-208;Nav1-205;Nav1-209;Nav1-206;Nav1-207,Nav1;Nav1;Nav1;Nav1;Nav1;Nav1;Nav1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,12,215690,ENSMUSG00000009418,mapped to different genes,1,135465776,135465997,222,*,222,16,0.630630631,0.746846089,0.072072072,2.79E-10,CpGisland,TRUE,NA,NRS
13355,cg06410786,0.0000188,0.00000676,2.78191982,0.005734931,gain,ns,0.00000698,0.0000115,0.607808271,0.543759646,pos,ns,0.008024593,0.003362876,2.386229248,0.017621948,pos,ns,1.753946082,-0.000148139,0.000115649,-1.280934846,0.201173998,neg,ns,0.315134427,Nr2f2,Nr2f2_Intron,7,70328368,70328417,70328416,70328417,50,-,TTGCACCTCCAGATGACAAACCTGAGTGTTTATTATGTGTACATGAATCG,"Intron (Gm29683-202/Gm29683-202, intron 1 of 3)",7,70353074,70355237,2164,2,Nr2f2-203,26869,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,69,11819,ENSMUSG00000030551,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
3977,cg24563131,-0.00000759,0.00000519,-1.464308923,0.144122889,loss,ns,-0.00000536,0.00000881,-0.607805141,0.543761719,neg,ns,-0.001991318,0.002581146,-0.771486194,0.441006466,neg,ns,0.355555043,-0.0000365,0.0000888,-0.410864984,0.681455399,neg,ns,0.905604989,5730522E02Rik,5730522E02Rik_Intron,11,26100213,26100262,26100261,26100262,50,+,TGCTTTTCTGTACATAATAATGTGGCACCTGCTGCTCAACATTGCAAACG,"Intron (5730522E02Rik-202/5730522E02Rik, intron 1 of 5)",11,25617668,26210569,592902,2,5730522E02Rik-202,110307,5730522E02Rik-202;5730522E02Rik-201;5730522E02Rik-203,5730522E02Rik;5730522E02Rik;5730522E02Rik,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,90,70626,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13928,cg24602341,-0.00000372,0.00000189,-1.967616668,0.050003386,loss,ns,-0.00000195,0.00000321,-0.607778593,0.543779306,neg,ns,-0.0000389,0.00094177,-0.041264559,0.967111551,neg,ns,0.01452343,-0.0000596,0.0000324,-1.841096284,0.066562856,neg,ns,0.022414851,Chd2,Chd2_Exon,7,73537988,73538037,73537988,73537989,50,-,CGGCCTTTGAACTCGGCACGGCAACTTCCTGCTGTTTGGCGAGTACACAG,"Exon (Gm44686-201/Gm44686-201, exon 1 of 4)",7,73426638,73541746,115109,2,Chd2-203,3709,Chd2-203;Chd2-201;Chd2-204;Chd2-207;Chd2-208;Chd2-216;Chd2-214,Chd2;Chd2;Chd2;Chd2;Chd2;Chd2;Chd2,0;0;-367;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,16,244059,ENSMUSG00000078671,conserved gene but different region,7,73537674,73538066,393,*,393,37,0.638676845,0.941530692,0.094147583,2.15E-27,CpGisland,TRUE,U9,En-Pp
9684,cg17210079,-0.0000158,0.00000905,-1.750882565,0.080955251,loss,ns,0.00000934,0.0000154,0.607771052,0.543784302,pos,ns,-0.006890932,0.004502689,-1.530403859,0.12693657,neg,ns,0.89641324,0.000108933,0.000154847,0.703485902,0.482281012,pos,ns,0.796339417,Gm7481,Gm7481_Intergenic_upstream,12,49949324,49949373,49949324,49949325,50,+,CGGCAGATGTGCTGCTATAACAGGTAACCTGATCATCCAGACCCATCTGT,Distal Intergenic,12,49840757,49841751,995,2,Gm7481-201,-107573,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,27,37,665077,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13706,cg24667723,0.0000711,0.0000141,5.041064005,0.000000789,gain,yes,-0.0000146,0.000024,-0.607751132,0.543797499,neg,ns,0.019681246,0.0070186,2.804155538,0.00536315,pos,ns,2.270580094,-0.000653588,0.000241369,-2.707835473,0.00714821,neg,ns,0.169193936,Tle1,Tle1_Intron,4,72185581,72185630,72185629,72185630,50,-,CAAATCATTTGGGTAATTGGATATCTTATCTTTCTATTGCTCTCAAATCG,"Intron (Tle1-203/Tle1, intron 4 of 19)",4,72117142,72200919,83778,2,Tle1-203,15289,Tle1-203;Tle1-202;Tle1-204;Tle1-207;Tle1-201;Tle1-205;Tle1-209;Tle1-208,Tle1;Tle1;Tle1;Tle1;Tle1;Tle1;Tle1;Tle1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,20,21885,ENSMUSG00000008305,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11880,cg05302107,-0.00000185,0.00000179,-1.02812232,0.304693815,loss,ns,-0.00000185,0.00000305,-0.607706943,0.543826774,neg,ns,0.000927393,0.000893388,1.038063312,0.300049579,pos,ns,0.522806978,-0.00000865,0.0000307,-0.281677501,0.778378745,neg,ns,0.94900121,Kpna3,Kpna3_Exon,14,61384613,61384662,61384661,61384662,50,-,GGGGGATCCTTATTCCTGCAGAGATTGACAATGACCCATGTGACGTTCCG,"Exon (Kpna3-201/Kpna3, exon 9 of 17)",14,61365211,61439874,74664,2,Kpna3-201,55212,Kpna3-201,Kpna3,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,16648,ENSMUSG00000021929,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18927,cg02305444,-0.000000138,0.00000162,-0.085214585,0.932145803,loss,ns,0.00000168,0.00000276,0.607543263,0.543935217,pos,ns,0.000384123,0.000807853,0.475486145,0.634775372,pos,ns,0.197379932,-0.0000016,0.0000278,-0.057756579,0.953979736,neg,ns,0.958872673,Mitf,Mitf_Intron,6,97950680,97950729,97950728,97950729,50,+,TTGGTAATTAGTCCTGCCTCTTTCAACTCTTGGCTTATTTTATAAAACCG,"Intron (Mitf-207/Mitf, intron 2 of 9)",6,97807052,98018593,211542,1,Mitf-207,143628,Mitf-207;Mitf-202;Mitf-203;Mitf-204,Mitf;Mitf;Mitf;Mitf,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,16,17342,ENSMUSG00000035158,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14460,cg12835547,0.000000496,0.00000256,0.193493563,0.846699164,gain,ns,-0.00000264,0.00000435,-0.607470294,0.543983564,neg,ns,-0.000400159,0.001274544,-0.313962621,0.753760598,neg,ns,0.122766569,-0.0000267,0.0000438,-0.60936551,0.54272853,neg,ns,0.935467638,Zc3h3,Zc3h3_Intron,15,75778241,75778290,75778289,75778290,50,-,TATCAAGAGGAAACTGCATTCTCATTTCAATTAACCTTGTTTGCACCCCG,"Intron (Zc3h3-201/Zc3h3, intron 8 of 11)",15,75754430,75841915,87486,2,Zc3h3-201,63625,Zc3h3-201;Zc3h3-203;Zc3h3-202,Zc3h3;Zc3h3;Zc3h3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,18,223642,ENSMUSG00000075600,conserved gene and region,15,75778232,75778447,216,*,216,15,0.50462963,1.095334686,0.069444444,1.93E-09,CpGisland,TRUE,U10,Tr-S
7105,cg11452666,0.0000628,0.0000179,3.513109473,0.000508797,gain,ns,-0.0000184,0.0000304,-0.607413583,0.544021141,neg,ns,0.015792638,0.008892273,1.775995658,0.076714485,pos,ns,1.115122628,-0.0000596,0.000305805,-0.19478224,0.845691018,neg,ns,0.534092572,Zfpm2,Zfpm2_Intron,15,40978768,40978817,40978816,40978817,50,-,GAGTAGCGCTGCAAGGTAGGTGATGTCTAGGTTTTTAATCTTCCACTCCG,"Intron (Zfpm2-201/Zfpm2, intron 5 of 7)",15,40655035,41104592,449558,1,Zfpm2-201,323733,Zfpm2-201;Zfpm2-203,Zfpm2;Zfpm2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,41,22762,ENSMUSG00000022306,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21761,cg08961664,0.00000574,0.00000489,1.17414441,0.241238396,gain,ns,-0.00000504,0.0000083,-0.60738946,0.544037125,neg,ns,0.000911526,0.002432892,0.374667758,0.708163747,pos,ns,0.14986631,-0.000175717,0.0000837,-2.100193173,0.03651959,neg,ns,0.943763932,Zfhx3,Zfhx3_Exon,8,108957023,108957072,108957023,108957024,50,-,CGGTGGAGGGTCCCAAAGACCCCAGCTGCCCCAAGGACAGTGGTCTGACC,"Exon (Zfhx3-204/Zfhx3, exon 16 of 16)",8,107942644,108961630,1018987,1,Zfhx3-204,1014379,Zfhx3-204;Zfhx3-201,Zfhx3;Zfhx3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,46,177,11906,ENSMUSG00000038872,conserved gene and region,8,108956951,108957024,74,*,74,9,0.608108108,1.316205534,0.121621622,6.35E-08,CpGisland,TRUE,NA,NRS
5039,cg18533392,0.000000903,0.0000044,0.205256765,0.837506234,gain,ns,0.00000454,0.00000747,0.607242032,0.54413482,pos,ns,0.005356095,0.002189007,2.446814549,0.014967558,pos,ns,1.824849062,-0.000170011,0.0000753,-2.258387374,0.024616423,neg,ns,0.926354223,Cpeb4,Cpeb4_threeUTR,11,31934515,31934564,31934515,31934516,50,-,CGCACTAGCATGGCGCCAGCCATGTACTTACAATGTAGTTACAGAGTAAT,3' UTR,11,31872226,31935634,63409,1,Cpeb4-202,62289,Cpeb4-201;Cpeb4-202;Cpeb4-203,Cpeb4;Cpeb4;Cpeb4,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,10,67579,ENSMUSG00000020300,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25424,cg02687104,0.0000587,0.000014,4.192698283,0.000036,gain,ns,-0.0000145,0.0000238,-0.60713689,0.544204498,neg,ns,-0.005004004,0.00697335,-0.717589655,0.47355072,neg,ns,0.324633499,0.0000604,0.000239813,0.251960645,0.801238444,pos,ns,0.711731175,Gm5904,Gm5904_Intergenic_upstream,7,136430455,136430504,136430455,136430456,50,-,CGACAGGTAAACCTATGGATAATTTATTTTTATGTGCTTTCAAAGGATGT,Distal Intergenic,7,136657209,136658073,865,1,Gm5904-201,-226754,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,14,17,546009,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6644,cg27135106,-0.00000246,0.00000125,-1.968974545,0.049846459,loss,ns,0.00000129,0.00000212,0.607065524,0.544251795,pos,ns,0.000362627,0.000622301,0.582719546,0.560505727,pos,ns,0.251419946,-0.0000172,0.0000214,-0.802627817,0.422804787,neg,ns,0.975517849,Uri1,Uri1_Intergenic_downstream,7,37909973,37910022,37909973,37909974,50,+,CGTTTACAGCGCCTGAGATTAATATTAGGTGTTTGTAAAAGGCGAATATT,Distal Intergenic,7,37961301,37962528,1228,2,Uri1-203,52506,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,19,27,19777,ENSMUSG00000030421,conserved gene and region,7,37909956,37910016,61,*,61,8,0.540983607,1.807407407,0.131147541,0.000000253,CpGisland,TRUE,U15,NS
6297,cg18288197,-0.0000249,0.00000837,-2.974908349,0.003161092,loss,ns,-0.00000863,0.0000142,-0.607051952,0.54426079,neg,ns,0.005349681,0.004164771,1.284507784,0.199923387,pos,ns,0.6991364,-0.000406327,0.000143226,-2.836964516,0.004854431,neg,ns,0.777967402,Tshz3,Tshz3_Intron,7,36739604,36739653,36739604,36739605,50,+,CGTCAGTGCTAAAATTGTGTATTATCATTGGAAATGGCTATTATTTCCTC,"Intron (Tshz3-201/Tshz3, intron 1 of 1)",7,36698118,36773553,75436,1,Tshz3-201,41486,Tshz3-201,Tshz3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,58,243931,ENSMUSG00000021217,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18743,cg03215611,-0.00000359,0.00000187,-1.920884232,0.055663286,loss,ns,-0.00000192,0.00000317,-0.607017471,0.544283643,neg,ns,0.000709841,0.000928928,0.764151105,0.445358433,pos,ns,0.351290319,-0.0000636,0.0000319,-1.991033589,0.047354715,neg,ns,0.947158363,Slc25a36,Slc25a36_Exon,9,97089483,97089532,97089531,97089532,50,-,GTACTCACGAGGTTTAAGTTAGTCCATATTTCTACAGGAAGTGACCTGCG,"Exon (Slc25a36-209/Slc25a36, exon 1 of 3)",9,97074961,97111157,36197,2,Slc25a36-202,21625,Slc25a36-202;Slc25a36-208;Slc25a36-206;Slc25a36-209;Slc25a36-204;Slc25a36-203;Slc25a36-205,Slc25a36;Slc25a36;Slc25a36;Slc25a36;Slc25a36;Slc25a36;Slc25a36,0;0;-4222;0;0;10688;21455,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,192287,ENSMUSG00000032449,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11196,cg08242207,0.0000292,0.00000864,3.379797632,0.000818159,gain,ns,0.00000891,0.0000147,0.606990689,0.544301394,pos,ns,0.014492488,0.0043004,3.370032274,0.000846636,pos,ns,3.072303231,-0.000266536,0.00014789,-1.802253375,0.072476822,neg,ns,0.023508592,Satb2,Satb2_Exon,1,56969689,56969738,56969689,56969690,50,+,CGCGGGCTCCCATGGGGCTGCCGTTCTGCTCCAGCCGGGCCACCTTCACT,"Exon (Satb2-201/Satb2, exon 2 of 10)",1,56793981,56972502,178522,2,Satb2-201,2764,Satb2-201;Satb2-202;Satb2-205;Satb2-203;Satb2-204,Satb2;Satb2;Satb2;Satb2;Satb2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,33,212712,ENSMUSG00000038331,conserved gene and region,1,56969620,56969894,275,*,275,29,0.705454546,0.850848181,0.105454546,4.32E-23,CpGisland,TRUE,U3,Pr-B
15984,cg02796521,-0.00000416,0.00000117,-3.54156322,0.000458864,loss,ns,0.00000121,0.00000199,0.606987629,0.544303422,pos,ns,-0.000682621,0.000584116,-1.168641128,0.243446143,neg,ns,0.613597102,-0.00000711,0.0000201,-0.354170216,0.723452102,neg,ns,0.031778108,Tshz1,Tshz1_fiveUTR,18,84086435,84086484,84086435,84086436,50,-,CGGATCGCAGAGCTTTCAGACAGTCTCAACTGATAGACAGACACATCGAG,Promoter (<=1kb),18,84012082,84086451,74370,2,Tshz1-202,0,Tshz1-201;Tshz1-202;Tshz1-203;Tshz1-204;Zadh2-201;Zadh2-202,Tshz1;Tshz1;Tshz1;Tshz1;Zadh2;Zadh2,0;0;0;0;0;-2187,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,18,110796,ENSMUSG00000046982,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
27397,cg21040645,0.0000123,0.00000364,3.36273658,0.000868511,gain,ns,-0.00000376,0.00000619,-0.606939017,0.544335642,neg,ns,0.002875068,0.001813631,1.585255207,0.113927887,pos,ns,0.943369957,-0.00000643,0.0000624,-0.103021799,0.918012282,neg,ns,0.892209696,Ildr2,Ildr2_Exon,1,166303516,166303565,166303516,166303517,50,+,CGGATCCAGGCTGACAAAGAGAGAGACTCCATGAAGGTCCTGTACTATGT,"Exon (Ildr2-201/Ildr2, exon 7 of 10)",1,166254139,166316823,62685,1,Ildr2-201,49377,Ildr2-201;Ildr2-202;Ildr2-203;Ildr2-204;Ildr2-205;Ildr2-206;Ildr2-207,Ildr2;Ildr2;Ildr2;Ildr2;Ildr2;Ildr2;Ildr2,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,100039795,ENSMUSG00000040612,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2343,cg20312798,-0.0000185,0.0000115,-1.610486166,0.108309487,loss,ns,0.0000119,0.0000195,0.606815154,0.544417743,pos,ns,-0.003633488,0.005726271,-0.63452949,0.526203315,neg,ns,0.27884642,0.000164038,0.000196926,0.832995498,0.405488573,pos,ns,0.129086207,Tfap2d,Tfap2d_fiveUTR,1,19103232,19103281,19103232,19103233,50,+,CGTAAGCTTTCGGAGAAACCCAACATGTCAACTACCTTTCCGGGACTAGT,Promoter (<=1kb),1,19103022,19166346,63325,1,Tfap2d-201,210,Tfap2d-201;Tfap2d-202,Tfap2d;Tfap2d,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,23,226896,ENSMUSG00000042596,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
1879,cg23039301,0.00000747,0.0000138,0.540745482,0.589071345,gain,ns,0.0000142,0.0000235,0.606800659,0.544427351,pos,ns,0.00554431,0.006875028,0.806441768,0.4206064,pos,ns,0.376124124,-0.000385593,0.000236432,-1.630886773,0.103929716,neg,ns,0.579457421,Gm42453,Gm42453_Intergenic_upstream,5,15850377,15850426,15850377,15850378,50,+,CGCACCTGCCTGCCGACCCAGCTATTTATTTAATTAAAAATCTGTTCCTG,Distal Intergenic,5,15870247,15870655,409,1,Gm42453-201,-19821,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17681,cg05215357,0.000044,0.00000376,11.70385235,1.89E-26,gain,yes,-0.00000387,0.00000638,-0.606787858,0.544435836,neg,ns,0.005974718,0.001869161,3.196469501,0.001534693,pos,ns,2.813978539,0.0000259,0.0000643,0.403221538,0.687063216,pos,ns,0.075629745,Elavl2,Elavl2_fiveUTR,4,91375992,91376041,91376040,91376041,50,+,CCAATAAGGATGAGCAAGAAGCTGCTGGATAGTTCTCTTAAGACAGCACG,Promoter (<=1kb),4,91250763,91376463,125701,2,Elavl2-208,422,Elavl2-204;Elavl2-201;Elavl2-207;Elavl2-208;Elavl2-202;Elavl2-209;Elavl2-203;Elavl2-205;Elavl2-215;Elavl2-212;Elavl2-214;Elavl2-211,Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,8,31,15569,ENSMUSG00000008489,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
22260,cg14979152,-0.00000373,0.00000287,-1.299905753,0.194598988,loss,ns,0.00000296,0.00000487,0.606627855,0.544541902,pos,ns,-0.000103871,0.00142742,-0.072768586,0.942037198,neg,ns,0.025931948,0.0000259,0.0000491,0.528011157,0.597869339,pos,ns,0.949904216,Zfp711,Zfp711_Exon,X,112633041,112633090,112633089,112633090,50,+,CAGTGTCCTCATTGTGACCATAAGAGCACCAATTCAAGTGACCTTAAGCG,"Exon (Zfp711-202/Zfp711, exon 9 of 9)",20,112600526,112635062,34537,1,Zfp711-202,32515,Zfp711-202;Zfp711-201;Zfp711-203,Zfp711;Zfp711;Zfp711,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,245595,ENSMUSG00000025529,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8865,cg19761145,-0.0000319,0.000012,-2.649501111,0.008474327,loss,ns,-0.0000124,0.0000205,-0.606587288,0.544568796,neg,ns,-0.005102502,0.005996394,-0.850928337,0.395465952,neg,ns,0.402890901,-0.000485959,0.000206216,-2.356557352,0.019067115,neg,ns,0.090405344,Gbf1,Gbf1_fiveUTR,19,46152528,46152577,46152576,46152577,50,+,CTAGACTGAGGCTAGTTACCACGTCAGTGAGCTGACAGGGAAGGTACCCG,Promoter (<=1kb),19,46152530,46255997,103468,1,Gbf1-204,0,Gbf1-201;Gbf1-204;Gbf1-214;Gbf1-207;Gbf1-216;Pitx3-201,Gbf1;Gbf1;Gbf1;Gbf1;Gbf1;Pitx3,0;0;0;0;-3;-4202,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,18,107338,ENSMUSG00000025224,conserved gene and region,19,46152414,46152595,182,*,182,13,0.582417582,0.842592593,0.071428571,2.16E-08,CpGisland,TRUE,U2,Pr-W
9078,cg09161730,0.0000122,0.0000061,1.995581202,0.046854328,gain,ns,-0.00000628,0.0000104,-0.606550892,0.544592925,neg,ns,-0.001943471,0.003033931,-0.640578658,0.522269687,neg,ns,0.282105181,0.000103977,0.000104337,0.996553004,0.319758756,pos,ns,0.904598376,Gm13469,Gm13469_Intergenic_upstream,2,46802952,46803001,46802952,46802953,50,+,CGGATGTTAACTTCCCACTGAGAGAATTTCTCCAGGTCGAATAGAAAACG,Distal Intergenic,2,46406220,46406569,350,2,Gm13469-201,-396383,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,20,27,383690,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15825,cg08224200,-0.0000382,0.00000652,-5.855919155,1.21E-08,loss,yes,-0.00000672,0.0000111,-0.606547712,0.544595033,neg,ns,-0.009080724,0.00324421,-2.799055041,0.005446442,neg,ns,2.263887077,0.0000644,0.000111568,0.5774306,0.56406774,pos,ns,0.919696904,Kcng3,Kcng3_Exon,17,83588256,83588305,83588256,83588257,50,-,CGTGATTGCCAGTAAATCAATGATGTTCAGGGGTCTCTTGACAAACTCAC,"Exon (Kcng3-201/Kcng3, exon 2 of 2)",17,83585957,83631895,45939,2,Kcng3-201,43590,Kcng3-201;Kcng3-202,Kcng3;Kcng3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,225030,ENSMUSG00000045053,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5151,cg16446343,0.00013715,0.000016,8.562794558,5.23E-16,gain,yes,-0.0000165,0.0000272,-0.606474915,0.544643296,neg,ns,0.029579511,0.007971781,3.710527391,0.000245084,pos,ns,3.610685119,-0.000747469,0.000274149,-2.72650718,0.006765127,neg,ns,0.233731381,Fli1,Fli1_Promoter,9,32545212,32545261,32545212,32545213,50,-,CGAGGCCATAATTAATTTGAGATTTATTTTTATTGGAGAACTCGAGTCTC,Promoter (2-3kb),9,32428059,32542861,114803,2,Fli1-202,-2400,Fli1-201;Fli1-202,Fli1;Fli1,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,5,15,14247,ENSMUSG00000016087,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14334,cg08203681,-0.000000609,0.000000317,-1.919858355,0.055793316,loss,ns,0.000000327,0.000000539,0.606451722,0.544658673,pos,ns,0.000249667,0.000157978,1.580388255,0.115037731,pos,ns,0.939159693,-0.00000744,0.00000543,-1.368769875,0.172062241,neg,ns,0.008584694,Hic1,Hic1_Exon,11,75173674,75173723,75173674,75173675,50,+,CGTCTCCAGGGCAACCGTGGCTTTCGATTGTTACTGTGGGAACTGGAGGT,Promoter (4-5kb),11,75164565,75169519,4955,2,Hic1-201,-4155,Dph1-201;Dph1-205;Dph1-204;Hic1-201;Ovca2-201;Ovca2-202,Dph1;Dph1;Dph1;Hic1;Ovca2;Ovca2,0;0;7589;0;5112;5064,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,10,15248,ENSMUSG00000043099,mapped to different genes,11,75173365,75173778,414,*,414,46,0.719806763,0.891573034,0.111111111,1.73E-37,CpGisland,TRUE,U3,Pr-B
19465,cg09531545,-0.0000239,0.00000476,-5.017116472,0.000000885,loss,yes,0.0000049,0.00000809,0.606282479,0.544770888,pos,ns,-0.00181169,0.002369278,-0.76465916,0.445056209,neg,ns,0.351585136,-0.000124187,0.0000815,-1.524156562,0.128489089,neg,ns,0.904958713,Gm12685,Gm12685_Intergenic_downstream,4,99374956,99375005,99375004,99375005,50,-,TTAATTTTCTAATTATGGATAAATGATCAGACAAGCTGAGCCAGGGCTCG,Distal Intergenic,4,99418498,99418711,214,2,Gm12685-201,43755,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,13,13,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2707,cg06972998,-0.00000929,0.000003,-3.09872813,0.00212164,loss,ns,0.00000309,0.00000509,0.60621491,0.544815692,pos,ns,0.000257762,0.001492067,0.172754966,0.862956772,pos,ns,0.064010959,-0.0000907,0.0000513,-1.767360556,0.078151657,neg,ns,0.036355429,Kat6b,Kat6b_Intron,14,21500374,21500423,21500374,21500375,50,+,CGATCAGCTCTCACACAAACTTTAGCTGCGGGCTAGGGGGTTTGGGGTTG,"Intron (Kat6b-209/Kat6b, intron 1 of 1)",14,21481434,21517111,35678,1,Kat6b-209,18940,Kat6b-209;Kat6b-211;Kat6b-206;Kat6b-204;Kat6b-201;Kat6b-207;Kat6b-202;Kat6b-208;Kat6b-212;Kat6b-210,Kat6b;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,21,54169,ENSMUSG00000021767,conserved gene and region,14,21500242,21500403,162,*,162,27,0.709876543,1.378071834,0.166666667,1.09E-27,CpGisland,TRUE,U1,Pr-A
23081,cg00439117,0.0000612,0.000013,4.719248545,0.00000359,gain,ns,-0.0000134,0.000022,-0.606177638,0.544840407,neg,ns,0.036123292,0.006455326,5.595889865,4.83E-08,pos,ns,7.316036749,-0.000916362,0.000221998,-4.127791286,0.0000471,neg,ns,0.507930866,Rnf220,Rnf220_Intron,4,117281312,117281361,117281360,117281361,50,-,GACAATGCAATTATCCAGTGTGGAGGCAGGGAGTTGGCGTGTGTCAAACG,"Intron (Rnf220-201/Rnf220, intron 8 of 14)",4,117271463,117497052,225590,2,Rnf220-201,215691,Rnf220-201;Rnf220-203;Rnf220-212;Rnf220-202;Rnf220-205;Rnf220-209;Rnf220-213;Rnf220-210;Rnf220-206;Rnf220-208,Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,4,117281349,117281438,90,*,90,8,0.555555556,1.18226601,0.088888889,0.00000534,CpGisland,TRUE,NA,NRS
22140,cg02593752,0.0000132,0.00000483,2.727052023,0.006754232,gain,ns,0.00000498,0.00000821,0.606067121,0.544913695,pos,ns,0.006264048,0.002406092,2.603411552,0.009674144,pos,ns,2.014387455,-0.000105742,0.0000827,-1.277917618,0.202234556,neg,ns,0.054820033,Bend5,Bend5_fiveUTR,4,111415167,111415216,111415167,111415168,50,-,CGCCCACCATGTACGCCTTTGTGCGGTTCCTGGAGGACAACGTCTGCTAC,Promoter (<=1kb),4,111415207,111420538,5332,1,Bend5-205,0,Agbl4-205;Agbl4-206;Agbl4-201;Agbl4-202;Agbl4-209;Bend5-201;Bend5-204;Bend5-203;Bend5-205,Agbl4;Agbl4;Agbl4;Agbl4;Agbl4;Bend5;Bend5;Bend5;Bend5,0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,2,67621,ENSMUSG00000028545,conserved gene and region,4,111414760,111415513,754,*,754,75,0.677718833,0.870348139,0.099469496,7.96E-57,CpGisland,TRUE,U2,Pr-W
22757,cg12483516,0.0000118,0.00000922,1.284345398,0.199980102,gain,ns,-0.0000095,0.0000157,-0.606029536,0.54493862,neg,ns,-0.00907513,0.004590265,-1.977038385,0.048923064,neg,ns,1.310486355,0.000051,0.000157859,0.322912721,0.746979036,pos,ns,0.719201393,Meis2,Meis2_Intron,2,115920696,115920745,115920696,115920697,50,+,CGGGTAGCTCATCAGGCAGCGAGCCTGATAAACCTAAAAGCTTTGTTAAT,"Intron (Meis2-201/Meis2, intron 9 of 11)",2,115863064,116065047,201984,2,Meis2-201,144302,Meis2-201;Meis2-203;Meis2-205;Meis2-206;Meis2-204;Meis2-202;Meis2-216;Meis2-217,Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,45,97,17536,ENSMUSG00000027210,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6603,cg23327296,-0.00000313,0.00000151,-2.068116494,0.039458209,loss,ns,0.00000156,0.00000257,0.605965996,0.544980759,pos,ns,0.001453808,0.000752954,1.93080651,0.054418686,pos,ns,1.264251951,-0.0000475,0.0000259,-1.833326232,0.067712807,neg,ns,0.05039625,Rreb1,Rreb1_fiveUTR,13,37826230,37826279,37826278,37826279,50,-,AGAAACGCCATTTTGATTCCTTTTCCGGAACAAGTTTGCATCTCTCCTCG,5' UTR,13,37778400,37893849,115450,1,Rreb1-204,47830,Rreb1-204;Rreb1-208;Rreb1-203;Rreb1-207;Rreb1-210;Rreb1-206;Rreb1-202,Rreb1;Rreb1;Rreb1;Rreb1;Rreb1;Rreb1;Rreb1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,10,68750,ENSMUSG00000039087,conserved gene and region,13,37826205,37826417,213,*,213,19,0.61971831,0.946666667,0.089201878,7.71E-14,CpGisland,TRUE,U1,Pr-A
10900,cg01378367,0.000000718,0.00000166,0.432662834,0.665560574,gain,ns,0.00000171,0.00000282,0.605760622,0.545116971,pos,ns,0.001918065,0.000826077,2.321896798,0.020886229,pos,ns,1.680139974,-0.0000426,0.0000284,-1.500361396,0.134538576,neg,ns,0.961102609,Tcf7l2,Tcf7l2_Intron,19,55765730,55765779,55765730,55765731,50,-,CGGGCCGTCATCAAACTAATTGTTGTTTGAATTACCTGTTATGATCCGAT,"Intron (Tcf7l2-213/Tcf7l2, intron 3 of 13)",19,55741820,55933229,191410,1,Tcf7l2-213,23910,Tcf7l2-213;Tcf7l2-201;Tcf7l2-208;Tcf7l2-211;Tcf7l2-212;Tcf7l2-206;Tcf7l2-204;Tcf7l2-205;Tcf7l2-222;Tcf7l2-215;Tcf7l2-214;Tcf7l2-207;Tcf7l2-202;Tcf7l2-209;Tcf7l2-210;Tcf7l2-217,Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,55,88,21416,ENSMUSG00000024985,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13267,cg20796817,-0.0000198,0.00000676,-2.92508062,0.003697755,loss,ns,-0.00000696,0.0000115,-0.605741664,0.545129546,neg,ns,-0.00984704,0.003364965,-2.92634229,0.003683197,neg,ns,2.433775001,0.000384298,0.000115721,3.32090562,0.001004441,pos,ns,0.864160148,Gm44690,Gm44690_Intergenic_upstream,7,69950364,69950413,69950412,69950413,50,-,GCAATAATCTGTCAGTCTGAGTCTTTTCTACACAGCACAAGTGGGGAGCG,Distal Intergenic,7,69883979,69884360,382,2,Gm44690-201,-66053,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,15,24,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7380,cg22336246,-0.0000177,0.00000526,-3.369385104,0.000848556,loss,ns,-0.00000541,0.00000894,-0.605523144,0.545274498,neg,ns,-0.005066108,0.002618692,-1.93459484,0.053949691,neg,ns,1.268011041,0.0000961,0.0000901,1.066689689,0.286942005,pos,ns,0.908381246,R3hcc1l,R3hcc1l_Intergenic_upstream,19,42483864,42483913,42483912,42483913,50,+,TAACATGAATAATTGATTTTGCCTCTGTAGCCTCAACAATAAATCTCCCG,Distal Intergenic,19,42518759,42592343,73585,1,R3hcc1l-201,-34846,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,13,52013,ENSMUSG00000025184,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19921,cg06177670,-0.00000228,0.000000922,-2.478128013,0.013739597,loss,ns,0.000000948,0.00000157,0.60545513,0.545319618,pos,ns,0.001404814,0.000458688,3.062682596,0.002385949,pos,ns,2.622338867,-0.000058,0.0000158,-3.677981802,0.000277059,neg,ns,0.97279405,Ogt,Ogt_Exon,X,101654096,101654145,101654096,101654097,50,+,CGAAAAGTCACATGATGAGAAATATGGTAACGGGTTTGTAACTGCCACAG,"Exon (Ogt-205/Ogt, exon 5 of 5)",20,101640060,101682940,42881,1,Ogt-202,14036,Ogt-202;Ogt-206;Ogt-201;Ogt-205;Ogt-204;Ogt-207;Ogt-203,Ogt;Ogt;Ogt;Ogt;Ogt;Ogt;Ogt,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,32,33,108155,ENSMUSG00000034160,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18361,cg02873280,0.0000525,0.00000532,9.866470434,3.79E-20,gain,yes,-0.00000547,0.00000904,-0.60536897,0.545376778,neg,ns,0.007722804,0.002646969,2.917603149,0.003785116,pos,ns,2.421920796,-0.0000492,0.000091,-0.540731376,0.589081057,neg,ns,0.089993457,Otp,Otp_Promoter,13,94872436,94872485,94872484,94872485,50,+,GTGATTTCTGAAGACATTCTTGTCATTCCGAAGATTTGGGGGCCATTGCG,Promoter (3-4kb),13,94875602,94885130,9529,1,Otp-201,-3117,Otp-201,Otp,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,27,34,18420,ENSMUSG00000021685,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
8984,cg05801951,-0.0000717,0.0000116,-6.203491992,1.77E-09,loss,yes,0.0000119,0.0000196,0.605324605,0.545406212,pos,ns,-0.017684004,0.005751306,-3.074780609,0.002294037,neg,ns,2.639399571,0.000392756,0.000197787,1.985752168,0.047941504,pos,ns,0.878970797,4931429L15Rik,4931429L15Rik_Intergenic_upstream,9,46482778,46482827,46482826,46482827,50,-,AAGACAGCTCCTTGGAAACACAATTGAAATATTTTTATAAATGACCAGCG,Distal Intergenic,9,46303361,46319986,16626,2,4931429L15Rik-201,-162841,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,12,22,74361,ENSMUSG00000056617,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9792,cg08804280,0.0000325,0.00000667,4.86791056,0.0000018,gain,yes,-0.00000686,0.0000113,-0.605272572,0.545440735,neg,ns,0.001066287,0.00331836,0.321329574,0.748177184,pos,ns,0.12599554,0.00000175,0.000114118,0.015321101,0.987785864,pos,ns,0.054320362,Trps1,Trps1_Promoter,15,50889453,50889502,50889501,50889502,50,-,TTTTTTTTTCAAAGAAAGTCACTTTTAATTCCCAGGGCTCCCCGCTCGCG,Promoter (<=1kb),15,50654752,50889691,234940,2,Trps1-202,189,Trps1-202;Trps1-206;Trps1-204;Trps1-205;Trps1-201;Trps1-208,Trps1;Trps1;Trps1;Trps1;Trps1;Trps1,0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,9,36,83925,ENSMUSG00000038679,conserved gene and region,15,50889495,50889675,181,*,181,26,0.718232044,1.135617761,0.143646409,1.20E-24,CpGisland,TRUE,U1,Pr-A
9958,cg13082148,-0.0000832,0.0000123,-6.753631233,7.12E-11,loss,yes,0.0000127,0.0000209,0.605252424,0.545454103,pos,ns,-0.012545235,0.006134351,-2.045079397,0.041691111,neg,ns,1.379956532,0.000415222,0.00021096,1.968250608,0.049930071,pos,ns,0.850502069,Satb1,Satb1_Intron,17,51760441,51760490,51760441,51760442,50,-,CGCACTACATCTGGTTGTGCTGGTAGCGGCAGTTAAATTGAAATATTTCA,"Intron (Satb1-208/Satb1, intron 9 of 10)",17,51736187,51832672,96486,2,Satb1-208,72182,Satb1-208;Satb1-213;Satb1-204;Satb1-214;Satb1-203;Satb1-211;Satb1-207,Satb1;Satb1;Satb1;Satb1;Satb1;Satb1;Satb1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,28,36,20230,ENSMUSG00000023927,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2439,cg13996934,0.00000713,0.0000185,0.384193797,0.701098213,gain,ns,-0.0000191,0.0000315,-0.605161457,0.54551446,neg,ns,-0.008000778,0.009230203,-0.866804139,0.386719749,neg,ns,0.412603649,0.000148947,0.000317426,0.469235117,0.639231432,pos,ns,0.27247295,Ptf1a,Ptf1a_Intergenic_downstream,2,19451610,19451659,19451658,19451659,50,+,TTTAACAAATCAACCATTACATATGTTTTGTGTCTCCATATTTTGATCCG,Distal Intergenic,2,19445663,19447501,1839,1,Ptf1a-201,5947,Ptf1a-201,Ptf1a,5947,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,14,21,19213,ENSMUSG00000026735,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
15028,cg25837547,0.000000505,0.00000166,0.304625276,0.760855968,gain,ns,-0.0000017,0.00000281,-0.605135781,0.545531496,neg,ns,0.000372039,0.000824654,0.45114615,0.652199638,pos,ns,0.185619447,0.000021,0.0000284,0.741981535,0.458660305,pos,ns,0.953081282,Gphn,Gphn_Intron,12,78558492,78558541,78558492,78558493,50,+,CGGTGATCAAAATTCCACACACTAGCTTCAAGCTGGGGGCTCGTAGCTAC,"Intron (Gphn-201/Gphn, intron 10 of 23)",12,78226379,78684772,458394,1,Gphn-201,332113,Gphn-201;Gphn-202,Gphn;Gphn,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,11,268566,ENSMUSG00000047454,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20666,cg21878650.2,-0.000239243,0.0000311,-7.69225409,1.94E-13,loss,yes,-0.000032,0.0000528,-0.605003915,0.545618998,neg,ns,0.068669727,0.01547969,4.436117585,0.0000127,pos,ns,4.894851185,-0.003958409,0.000532345,-7.435792717,1.02E-12,neg,yes,0.707051232,Adamts6,Adamts6_threeUTR,13,104397979,104398028,104398027,104398028,50,+,TCATCCCTAAGACACTGTGACAGTCCAGCGTAAGTAGCTAAAGTAAGCCG,3' UTR,13,104287835,104496695,208861,1,Adamts6-207,110144,Adamts6-207;Adamts6-202;Adamts6-201;Adamts6-206;Adamts6-203;Adamts6-204,Adamts6;Adamts6;Adamts6;Adamts6;Adamts6;Adamts6,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,19,31,108154,ENSMUSG00000046169,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16988,cg12777482,-0.0000222,0.00000696,-3.181031313,0.001616102,loss,ns,-0.00000716,0.0000118,-0.604971104,0.545640771,neg,ns,-0.002190192,0.003465899,-0.6319262,0.527900842,neg,ns,0.277447645,-0.00000722,0.000119192,-0.060580214,0.951732567,neg,ns,0.916642654,Zfp423,Zfp423_Intron,8,87750127,87750176,87750175,87750176,50,+,TCATATCACAGTGAGCCACTACTAAACCTGGCAGGGGTGCAGTATTTTCG,"Intron (Zfp423-203/Zfp423, intron 3 of 5)",8,87661810,87804439,142630,2,Zfp423-203,54263,Zfp423-203;Zfp423-202;Zfp423-201,Zfp423;Zfp423;Zfp423,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,42,53,94187,ENSMUSG00000045333,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4848,cg19196801,-0.000000444,0.00000195,-0.227524665,0.820165776,loss,ns,-0.00000201,0.00000332,-0.604922782,0.545672838,neg,ns,0.0000533,0.000971636,0.0548201,0.9563171,pos,ns,0.019398078,0.0000283,0.0000334,0.847023324,0.397635547,pos,ns,0.072927053,Usf2,Usf2_Exon,7,30955971,30956020,30956019,30956020,50,+,ATCAGTCACCTGGACTACGCGGTATGTCACCTGCAGGGGGCGGCAGAGCG,Promoter (<=1kb),7,30945248,30956803,11556,2,Usf2-201,783,Lsr-202;Lsr-201;Lsr-203;Lsr-205;Lsr-204;Usf2-201;Usf2-205;Usf2-208;Usf2-203;Usf2-209;Usf2-210;Usf2-211;Usf2-202;Usf2-207;Usf2-204;Usf2-206,Lsr;Lsr;Lsr;Lsr;Lsr;Usf2;Usf2;Usf2;Usf2;Usf2;Usf2;Usf2;Usf2;Usf2;Usf2;Usf2,17406;17444;17407;17302;17395;0;0;0;0;0;0;0;0;-521;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,22282,ENSMUSG00000058239,conserved gene and region,7,30955786,30957106,1321,*,1321,161,0.774413323,0.813311664,0.121877366,5.10E-137,CpGisland,TRUE,U1,Pr-A
14847,cg21674101,-0.00000477,0.00000255,-1.868661416,0.062612916,loss,ns,0.00000262,0.00000434,0.604897354,0.545689712,pos,ns,-0.002061172,0.001270567,-1.622245027,0.105767421,neg,ns,0.975648087,0.0000615,0.0000437,1.407632375,0.160241882,pos,ns,0.876716798,Eif3d,Eif3d_Exon,15,77959617,77959666,77959665,77959666,50,-,TGAGGATGAGGTATTTGCCCTCCTCCAGCTTCATGCAGATGTCAATGACG,"Exon (Eif3d-201/Eif3d, exon 14 of 15)",15,77958998,77970813,11816,2,Eif3d-201,11147,Eif3d-201;Eif3d-206;Eif3d-208;Eif3d-204;Foxred2-201;Foxred2-202;Foxred2-203,Eif3d;Eif3d;Eif3d;Eif3d;Foxred2;Foxred2;Foxred2,0;0;4106;4512;-2895;-2942;-2934,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,55944,ENSMUSG00000016554,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2069,cg05708750,0.00000365,0.00000471,0.77433036,0.43932561,gain,ns,0.00000485,0.00000801,0.604872041,0.545706511,pos,ns,0.001874729,0.002346681,0.79888549,0.424968449,pos,ns,0.371643312,-0.000105339,0.0000807,-1.305282967,0.19276447,neg,ns,0.771781215,Spaca6,Spaca6_Exon,17,17830164,17830213,17830164,17830165,50,-,CGGGGGCCCGGACTCCTGGGTCCTGGCACCCACCCGTAGAACCGACCTTG,"Exon (Mir99b-201/Mir99b-201, exon 1 of 1)",17,17827158,17839071,11914,1,Spaca6-215,3006,Spaca6-215;Spaca6-216;Spaca6-203;Spaca6-212;Spaca6-209;Spaca6-205;Spaca6-201;Spaca6-210;Spaca6-206;Spaca6-204;Spaca6-211,Spaca6;Spaca6;Spaca6;Spaca6;Spaca6;Spaca6;Spaca6;Spaca6;Spaca6;Spaca6;Spaca6,0;0;0;-680;-791;-851;-967;-967;-1231;-1822;-2739,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,75202,ENSMUSG00000080316,mapped to different genes,17,17830164,17830289,126,*,126,13,0.722222222,0.793604651,0.103174603,2.07E-10,CpGisland,TRUE,U11,Tr-P
4348,cg01257828,0.0000933,0.00000934,9.990569314,1.48E-20,gain,yes,-0.0000096,0.0000159,-0.604811525,0.545746672,neg,ns,0.009217055,0.004648486,1.982807728,0.048271302,pos,ns,1.316310984,0.0000267,0.000159861,0.16703589,0.867450713,pos,ns,0.124317957,Fgf12,Fgf12_fiveUTR,16,28446159,28446208,28446159,28446160,50,-,CGGGCACAGTTGGTGATTATTTAGGGAATCCTAAATCTGGAATGACTCAG,Promoter (<=1kb),16,28160098,28446277,286180,2,Fgf12-201,69,Fgf12-201;Fgf12-205;Fgf12-202;Fgf12-204,Fgf12;Fgf12;Fgf12;Fgf12,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,5,14167,ENSMUSG00000022523,conserved gene but different region,16,28445809,28446160,352,*,352,31,0.676136364,0.797835783,0.088068182,4.16E-22,CpGisland,TRUE,U3,Pr-B
7653,cg10240169,-0.0000141,0.00000895,-1.572828163,0.116778637,loss,ns,0.0000092,0.0000152,0.604534514,0.545930531,pos,ns,0.003394306,0.004456744,0.761611282,0.446871045,pos,ns,0.349817785,0.0000393,0.000153267,0.256167804,0.797991175,pos,ns,0.840189853,Zbtb20,Zbtb20_fiveUTR,16,43577620,43577669,43577620,43577621,50,+,CGGGTGGATCCAGCGCCAAGCCGGGCCTTCCCTGCCTGAACTTTGAAGCT,5' UTR,16,42907645,43577725,670081,1,Zbtb20-217,669975,Zbtb20-217;Zbtb20-204;Zbtb20-215;Zbtb20-201;Zbtb20-203;Zbtb20-213;Zbtb20-219;Zbtb20-216;Zbtb20-208;Zbtb20-220;Zbtb20-206;Zbtb20-202;Zbtb20-205,Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,8,98,56490,ENSMUSG00000022708,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26498,cg07787884,0.00000401,0.00000239,1.677197724,0.09451179,gain,ns,0.00000245,0.00000406,0.604333427,0.546064016,pos,ns,0.001562904,0.001189226,1.314219627,0.189743894,pos,ns,0.72183219,-0.0000416,0.0000409,-1.018050704,0.309447722,neg,ns,0.950300975,Adgrl2,Adgrl2_fiveUTR,3,148817879,148817928,148817879,148817880,50,-,CGGTAGAGTATCCATGGCACTTGTATCCCTGGCATTGTTCAGTGAATGTC,5' UTR,3,148815583,148828548,12966,2,Adgrl2-210,10620,Adgrl2-210;Adgrl2-202;Adgrl2-218;Adgrl2-203;Adgrl2-208;Adgrl2-205;Adgrl2-217;Adgrl2-220;Adgrl2-215;Adgrl2-204;Adgrl2-212;Adgrl2-213;Adgrl2-214;Adgrl2-206;Adgrl2-209;Adgrl2-219;Adgrl2-216,Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,10,99633,ENSMUSG00000028184,conserved gene but different region,3,148817780,148817969,190,*,190,14,0.552631579,0.969387755,0.073684211,3.52E-09,CpGisland,TRUE,U10,Tr-S
216,cg00214262,-0.00000408,0.00000307,-1.329044541,0.184810613,loss,ns,-0.00000315,0.00000522,-0.604256746,0.546114922,neg,ns,-0.002466045,0.001529589,-1.612226767,0.107930164,neg,ns,0.966857164,0.000058,0.0000526,1.103028276,0.270870424,pos,ns,0.964161534,Gm21992,Gm21992_Exon,19,4787974,4788023,4787974,4787975,50,-,CGCTCTGGTCTCCCATCCCGGGCGCAGTCCTAAGCCGGCTGGTGGACAAC,"Exon (Rbm4-206/Rbm4, exon 3 of 4)",19,4742913,4811612,68700,2,Gm21992-203,23589,Gm21992-203;Gm21992-206;Gm21992-204;Gm21992-201;Gm21992-205;Gm21992-202;Rbm4-206;Rbm4-203;Rbm4-207;Rbm4-201;Rbm4-204;Rbm4-202;Rbm4-205,Gm21992;Gm21992;Gm21992;Gm21992;Gm21992;Gm21992;Rbm4;Rbm4;Rbm4;Rbm4;Rbm4;Rbm4;Rbm4,0;0;0;0;0;0;0;0;0;0;0;0;5860,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,27,48,102902673,ENSMUSG00000096370,mapped to different genes,19,4787858,4788058,201,*,201,17,0.577114428,1.040816327,0.084577114,4.91E-12,CpGisland,TRUE,U10,Tr-S
16915,cg18459433,0.000034,0.00000738,4.608198561,0.00000594,gain,ns,0.00000757,0.0000125,0.604194516,0.546156236,pos,ns,0.010226783,0.003672864,2.784416897,0.005692046,pos,ns,2.244731626,-0.000545927,0.000126309,-4.322135734,0.0000208,neg,ns,0.557988842,Slc24a2,Slc24a2_Intergenic_upstream,4,87379645,87379694,87379645,87379646,50,+,CGCAGGCCACAGAGGTCAATGGCTTTAAGCCAAGCCTGGCTGAAAGCTGC,Distal Intergenic,4,86983124,87230477,247354,2,Slc24a2-203,-149168,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,3,76376,ENSMUSG00000037996,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8711,cg02844523,0.00000521,0.00000494,1.055733498,0.291912054,gain,ns,-0.00000507,0.00000839,-0.603912172,0.546343704,neg,ns,0.00059513,0.002457478,0.242171065,0.808807745,pos,ns,0.092154699,-0.000033,0.0000845,-0.390423649,0.696491449,neg,ns,0.771557608,Atxn1,Atxn1_fiveUTR,13,45568377,45568426,45568425,45568426,50,-,GGAGGCAGGCATTCGTTGCTCCGCTCTTGGTTGGATTTCATTTTTCGCCG,5' UTR,13,45549755,45964976,415222,2,Atxn1-201,396550,Atxn1-201;Atxn1-202;Atxn1-203,Atxn1;Atxn1;Atxn1,0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,10,20238,ENSMUSG00000046876,conserved gene and region,13,45568219,45568462,244,*,244,17,0.668032787,0.62451069,0.069672131,1.17E-10,CpGisland,TRUE,U11,Tr-P
15696,cg16111239,-0.00000259,0.00000149,-1.733495004,0.08400202,loss,ns,0.00000153,0.00000253,0.603883019,0.546363063,pos,ns,0.000337117,0.000742368,0.454110448,0.650067106,pos,ns,0.187041809,-0.00000983,0.0000255,-0.385174006,0.700372644,neg,ns,0.045610692,Mex3b,Mex3b_Promoter,7,82867103,82867152,82867103,82867104,50,-,CGCCAATCGCCTCCCCCAGCGATAGTGTCAGTAGCATTGTGGTGTCAGCT,Promoter (<=1kb),7,82867333,82871515,4183,1,Mex3b-201,-230,Mex3b-201,Mex3b,-181,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,1,108797,ENSMUSG00000057706,conserved gene and region,7,82866912,82867741,830,*,830,94,0.721686747,0.876137002,0.113253012,7.01E-77,CpGisland,TRUE,U2,Pr-W
12754,cg14457603,0.0000213,0.00000526,4.046422769,0.0000657,gain,ns,-0.00000539,0.00000893,-0.603850697,0.546384526,neg,ns,0.009700369,0.002617332,3.706204375,0.000249121,pos,ns,3.603589214,-0.00023547,0.00009,-2.61604929,0.009330867,neg,ns,0.123464135,Phox2b,Phox2b_Promoter,5,67098500,67098549,67098500,67098501,50,-,CGGGTGTGACTAGGATAGTGTAACCCTGTAAGTGAATTACCCCTCCCTGC,Promoter (<=1kb),5,67094399,67099301,4903,2,Phox2b-201,752,Phox2b-201;Phox2b-202,Phox2b;Phox2b,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,13,28,18935,ENSMUSG00000012520,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
25685,cg16275162,-0.0000174,0.00000473,-3.673007236,0.000282279,loss,ns,-0.00000486,0.00000804,-0.603845353,0.546388074,neg,ns,-0.004117949,0.002355858,-1.74796167,0.081460677,neg,ns,1.089051984,0.0000521,0.000081,0.643356895,0.520468169,pos,ns,0.861828056,Lmo3,Lmo3_Intron,6,138380232,138380281,138380280,138380281,50,+,AGGGAACATTTTACTGAACTGTCAGCTCACAGACTGAGTGTGGAGATGCG,"Intron (Lmo3-204/Lmo3, intron 3 of 4)",6,138362918,138581968,219051,2,Lmo3-204,201687,Lmo3-204;Lmo3-207;Lmo3-201;Lmo3-206;Lmo3-202;Lmo3-208;Lmo3-203,Lmo3;Lmo3;Lmo3;Lmo3;Lmo3;Lmo3;Lmo3,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,38,109593,ENSMUSG00000030226,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11624,cg16900910,-0.000000949,0.00000589,-0.160932039,0.872251752,loss,ns,0.00000605,0.00001,0.603794867,0.5464216,pos,ns,0.004171407,0.002933968,1.421762852,0.15610038,pos,ns,0.80659604,-0.000178746,0.000100899,-1.771531526,0.07745474,neg,ns,0.918860308,Arih1,Arih1_Intron,9,59467813,59467862,59467813,59467814,50,+,CGCCTGTCCTTTGCATCACTGAATTCATACTTCTGGAAGTACCCAATATG,"Intron (Arih1-207/Arih1, intron 1 of 13)",9,59388258,59486614,98357,2,Arih1-207,18752,Arih1-207;Arih1-201;Arih1-202;Arih1-204;Arih1-205;Rps11-ps1-201,Arih1;Arih1;Arih1;Arih1;Arih1;Rps11-ps1,0;0;0;0;0;4371,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,13,23806,ENSMUSG00000025234,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16446,cg13471822,0.0000146,0.00000281,5.176739135,0.000000407,gain,yes,-0.00000288,0.00000478,-0.603785254,0.546427984,neg,ns,-0.003023999,0.001399817,-2.160282155,0.0315169,neg,ns,1.501456506,0.000157383,0.0000481,3.269299891,0.001199376,pos,ns,0.920446746,Ric8b,Ric8b_Exon,10,85008787,85008836,85008787,85008788,50,+,CGTATAGGTAAATTCGAAGGGACTCTTGGGAGATCTGCAAGTGGGAAACA,"Exon (Ric8b-204/Ric8b, exon 1 of 3)",10,84917616,85016447,98832,1,Ric8b-201,91171,Ric8b-201;Ric8b-202;Ric8b-205;Ric8b-204,Ric8b;Ric8b;Ric8b;Ric8b,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,14,237422,ENSMUSG00000035620,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
10251,cg03036119,-0.00000522,0.00000255,-2.048355603,0.041367147,loss,ns,0.00000261,0.00000433,0.603612166,0.546542934,pos,ns,0.000481933,0.001267652,0.38017787,0.704073731,pos,ns,0.152381859,-0.0000213,0.0000436,-0.489384409,0.624915665,neg,ns,0.936631136,Neb,Neb_Exon,2,52278985,52279034,52279033,52279034,50,-,TTGGCCACTTGCATGAAGTGCACCAGCTTGGGGTCATCTTCCAGGCTCCG,"Exon (Neb-202/Neb, exon 45 of 157)",2,52136647,52338798,202152,2,Neb-202,59764,Neb-202;Neb-203;Neb-213;Neb-214,Neb;Neb;Neb;Neb,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,8,17996,ENSMUSG00000026950,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3692,cg26466145,-0.00000304,0.00000304,-0.999665286,0.318252177,loss,ns,-0.00000312,0.00000517,-0.603600198,0.546550883,neg,ns,0.002685198,0.001514971,1.772441802,0.077303323,pos,ns,1.111801838,-0.000112663,0.0000521,-2.162443546,0.031348539,neg,ns,0.107804158,Lpp,Lpp_Intergenic_downstream,16,25059417,25059466,25059417,25059418,50,+,CGGGGCTTGATGTCTGCAAAATGTCGGAAACGCAGCCAAGAGCTGCTAAC,Distal Intergenic,16,24845175,24979450,134276,1,Lpp-206,214242,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,7,210126,ENSMUSG00000033306,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
24450,cg18298247,-0.00000061,0.00000122,-0.500897154,0.616798965,loss,ns,-0.00000125,0.00000207,-0.603584891,0.546561049,neg,ns,0.000813569,0.000606103,1.342295328,0.18048244,pos,ns,0.743565047,-0.0000377,0.0000208,-1.806741272,0.071772169,neg,ns,0.960372071,Ago3,Ago3_Exon,4,126345493,126345542,126345493,126345494,50,-,CGTAAGGTATCTTGGTGAATCTGTACAGCCTTGGCAAGAGCTTGTGGATC,"Exon (Ago3-201/Ago3, exon 19 of 19)",4,126331704,126350320,18617,2,Ago3-204,4778,Ago3-204;Ago3-201;Ago3-203,Ago3;Ago3;Ago3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,8,214150,ENSMUSG00000028842,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6404,cg06897681,0.0000429,0.0000121,3.559966562,0.000429057,gain,ns,0.0000124,0.0000205,0.603580129,0.546564212,pos,ns,0.0094284,0.005998613,1.571763345,0.1170255,pos,ns,0.931719494,-0.000264839,0.000206292,-1.283809301,0.200167422,neg,ns,0.777258374,Stxbp5l,Stxbp5l_Exon,16,37142389,37142438,37142389,37142390,50,-,CGTTTTCCAGAACTGCAACTCTGAGAAGTTGGACTTGTGCAGTGTCCATT,"Exon (Stxbp5l-206/Stxbp5l, exon 22 of 28)",16,37114942,37384923,269982,2,Stxbp5l-206,242485,Stxbp5l-206;Stxbp5l-205;Stxbp5l-204;Stxbp5l-203;Stxbp5l-201,Stxbp5l;Stxbp5l;Stxbp5l;Stxbp5l;Stxbp5l,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,207227,ENSMUSG00000022829,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26089,cg26440694,-0.0000191,0.00000486,-3.940209712,0.000100639,loss,ns,-0.00000498,0.00000825,-0.603495535,0.546620397,neg,ns,-0.001575358,0.002417148,-0.651742604,0.515050124,neg,ns,0.288150504,-0.0000933,0.0000831,-1.122301144,0.262602919,neg,ns,0.950021738,Sox5,Sox5_Intron,6,143839035,143839084,143839035,143839036,50,-,CGCCTGTTTTAAGCAGAATGAATTAGCGGCATGCTGTCGGAGGCTGTTAT,"Intron (Sox5-201/Sox5, intron 13 of 14)",6,143828425,144209480,381056,2,Sox5-201,370396,Sox5-201;Sox5-214;Sox5-205;Sox5-204;Sox5-202;Sox5-203;Sox5-209,Sox5;Sox5;Sox5;Sox5;Sox5;Sox5;Sox5,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,71,20678,ENSMUSG00000041540,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5375,cg02499612,0.00000489,0.00000133,3.664208089,0.000291741,gain,ns,0.00000137,0.00000227,0.603478418,0.546631766,pos,ns,0.001588296,0.000663871,2.392475877,0.017330301,pos,ns,1.761193905,-0.0000278,0.0000228,-1.218604598,0.223920849,neg,ns,0.023652753,Lmx1b,Lmx1b_Exon,2,33639585,33639634,33639633,33639634,50,+,TGCCAGGACGACTCGTTGACTCGCATCAGGAAGCGGTCGGAGATGGGCCG,Promoter (<=1kb),2,33560965,33640608,79644,2,Lmx1b-201,974,Lmx1b-201;Lmx1b-203;Lmx1b-204,Lmx1b;Lmx1b;Lmx1b,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,26,16917,ENSMUSG00000038765,conserved gene and region,2,33639200,33640032,833,*,833,76,0.673469388,0.805752832,0.091236495,1.56E-54,CpGisland,TRUE,U3,Pr-B
26622,cg19376000,0.000119141,0.0000245,4.855831408,0.00000191,gain,ns,-0.0000252,0.0000417,-0.603424758,0.546667408,neg,ns,0.071338064,0.01221164,5.841808814,0.000000013,pos,ns,7.884409145,-0.001585297,0.000419957,-3.774899996,0.000191807,neg,ns,0.491338342,Pex14,Pex14_Intron,4,149038006,149038055,149038054,149038055,50,-,GGTAACGAGATTCCATTCAAGGACATGCAAACTACCTCATGAAATAGACG,"Intron (Pex14-201/Pex14, intron 3 of 8)",4,148960535,149099876,139342,2,Pex14-201,61821,Pex14-201;Pex14-202;Pex14-205;Pex14-203;Pex14-204,Pex14;Pex14;Pex14;Pex14;Pex14,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,41,48,56273,ENSMUSG00000028975,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4582,cg18156125,0.000106538,0.0000102,10.40366485,6.11E-22,gain,yes,-0.0000105,0.0000174,-0.603304547,0.546747257,neg,ns,0.012591028,0.00509678,2.470388524,0.014034481,pos,ns,1.852803638,-0.000191101,0.000175278,-1.090276409,0.276438144,neg,ns,0.53149135,Urm1,Urm1_Intergenic_downstream,2,29846396,29846445,29846444,29846445,50,-,TACTGGATTTGAATAACGCCACGGGGCCATCAATGGTCATTGTGTCGGCG,Downstream (1-2kb),2,29841648,29844064,2417,1,Urm1-202,4797,Urm1-205;Urm1-206;Urm1-201;Urm1-204;Urm1-202,Urm1;Urm1;Urm1;Urm1;Urm1,26321;19054;19054;19035;4748,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,6,10,68205,ENSMUSG00000069020,mapped to different genes,2,29846021,29846498,478,*,478,42,0.688284519,0.749440048,0.087866109,1.04E-29,CpGisland,TRUE,U11,Tr-P
17580,cg23779125,0.00013748,0.0000209,6.583905216,1.96E-10,gain,yes,-0.0000214,0.0000355,-0.60330407,0.546747574,neg,ns,0.039479877,0.010392785,3.798777302,0.000174987,pos,ns,3.756994935,-0.001141322,0.000357407,-3.19334064,0.001550879,neg,ns,0.304568292,Spi1,Spi1_Exon,2,91115156,91115205,91115204,91115205,50,+,TGGACAAGGACAAGGGCACCTTCCAGTTCTCGTCCAAGCACAAGGAGGCG,"Exon (Spi1-201/Spi1, exon 5 of 5)",2,91096096,91115756,19661,1,Spi1-201,19060,Mybpc3-201;Mybpc3-202;Mybpc3-203;Spi1-204;Spi1-201;Spi1-203,Mybpc3;Mybpc3;Mybpc3;Spi1;Spi1;Spi1,-2939;-2939;-2939;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,7,20375,ENSMUSG00000002111,conserved gene but different region,2,91115186,91115299,114,*,114,12,0.649122807,1.002197802,0.105263158,9.79E-10,CpGisland,TRUE,U2,Pr-W
10716,cg26070220,-0.00000379,0.00000697,-0.543965558,0.586856177,loss,ns,0.00000714,0.0000118,0.603271907,0.546768939,pos,ns,0.001686403,0.003468362,0.486224752,0.627151356,pos,ns,0.202627634,-0.00000998,0.000119277,-0.083669239,0.933373418,neg,ns,0.76442401,Unc5a,Unc5a_Exon,13,55003643,55003692,55003643,55003644,50,+,CGATGTGCCCAGCTCCCTGTGGAAGAGTAAGCTCCTTGTCAGCTACCAGG,Promoter (<=1kb),13,55003680,55005486,1807,1,Unc5a-204,0,Hk3-201;Hk3-208;Hk3-204;Hk3-203;Hk3-202;Unc5a-201;Unc5a-202;Unc5a-203;Unc5a-205;Unc5a-204,Hk3;Hk3;Hk3;Hk3;Hk3;Unc5a;Unc5a;Unc5a;Unc5a;Unc5a,17693;17542;17604;17212;17212;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,12,107448,ENSMUSG00000025876,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24079,cg17183951,0.0000712,0.0000114,6.255284847,1.32E-09,gain,yes,0.0000117,0.0000194,0.603246821,0.546785604,pos,ns,0.009604659,0.00566909,1.694215212,0.091228741,pos,ns,1.039868319,0.0000461,0.00019496,0.236273632,0.813376381,pos,ns,0.428481903,Zic5,Zic5_Intergenic_downstream,14,122453436,122453485,122453436,122453437,50,-,CGGAGTTTAAATGTCACCTCCGCCTTTCTAATGGGCACAGGGCTGGAGGC,Distal Intergenic,14,122459193,122460021,829,2,Zic5-202,6585,Zic5-201,Zic5,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,14,26,65100,ENSMUSG00000041703,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
13040,cg23162211,-0.00000335,0.00000153,-2.185701124,0.02958541,loss,ns,-0.00000157,0.0000026,-0.603222595,0.546801697,neg,ns,-0.000842888,0.000762845,-1.104927268,0.27004794,neg,ns,0.568559132,-0.0000343,0.0000262,-1.308716675,0.191599709,neg,ns,0.037723299,Tcf4,Tcf4_fiveUTR,18,69344551,69344600,69344599,69344600,50,+,ATTACAATGTATCTTTCAGGGAAACCTATTATTATCAATGTGACTCCACG,5' UTR,18,69343356,69564082,220727,1,Tcf4-259,1195,Tcf4-259;Tcf4-201;Tcf4-207;Tcf4-210;Tcf4-240;Tcf4-254;Tcf4-246;Tcf4-206;Tcf4-202;Tcf4-257;Tcf4-232;Tcf4-215;Tcf4-248;Tcf4-231;Tcf4-205;Tcf4-253;Tcf4-244;Tcf4-233;Tcf4-238;Tcf4-245;Tcf4-249;Tcf4-219;Tcf4-235;Tcf4-227,Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,12,66,21413,ENSMUSG00000053477,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7506,cg26505248,0.0000549,0.00000509,10.77091013,3.43E-23,gain,yes,-0.00000522,0.00000865,-0.603029998,0.546929647,neg,ns,0.007232793,0.002534976,2.853199142,0.004619291,pos,ns,2.335424691,-0.000119221,0.0000872,-1.367563881,0.172439271,neg,ns,0.08208156,Ppp2r2b,Ppp2r2b_fiveUTR,18,42899508,42899557,42899556,42899557,50,+,CAGGAGGCTGGAGGCGGCTGGTGCATTAAAGGCGAGGCTCCTCCCAACCG,5' UTR,18,42645269,43059471,414203,2,Ppp2r2b-201,159914,Ppp2r2b-204;Ppp2r2b-202;Ppp2r2b-201;Ppp2r2b-203;Ppp2r2b-208;Ppp2r2b-207;Ppp2r2b-205;Ppp2r2b-206,Ppp2r2b;Ppp2r2b;Ppp2r2b;Ppp2r2b;Ppp2r2b;Ppp2r2b;Ppp2r2b;Ppp2r2b,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,9,15,72930,ENSMUSG00000024500,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18267,cg14039981,-0.00000678,0.0000056,-1.210390582,0.227051118,loss,ns,-0.00000573,0.00000951,-0.602997722,0.546951091,neg,ns,-0.000586539,0.002786185,-0.210517006,0.833402483,neg,ns,0.07914521,-0.0000884,0.0000958,-0.922650654,0.356906826,neg,ns,0.889507209,Dyrk1a,Dyrk1a_fiveUTR,16,94659542,94659591,94659542,94659543,50,+,CGTCATTTTCATTCCATGCTGCTGGCCTTCAGATGGCTGGACAGATGCCC,5' UTR,16,94570010,94695067,125058,1,Dyrk1a-202,89532,Dyrk1a-202;Dyrk1a-203;Dyrk1a-205;Dyrk1a-206;Dyrk1a-201,Dyrk1a;Dyrk1a;Dyrk1a;Dyrk1a;Dyrk1a,0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,14,13548,ENSMUSG00000022897,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21353,cg05675373,0.0000146,0.00000276,5.292849986,0.000000228,gain,yes,-0.00000283,0.0000047,-0.602924191,0.546999946,neg,ns,0.001038457,0.001375731,0.754840171,0.450917953,pos,ns,0.345902473,-0.0000446,0.0000473,-0.943115243,0.346356374,neg,ns,0.010231003,Kcnc4,Kcnc4_Exon,3,107458706,107458755,107458754,107458755,50,-,AGGCGGGTTCCCGGTAGGGTGCGCAGGGTGCTGCGGTAGGTCTCATGTCG,Promoter (<=1kb),3,107438303,107459552,21250,2,Kcnc4-201,797,Kcnc4-201;Kcnc4-202,Kcnc4;Kcnc4,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,12,99738,ENSMUSG00000027895,conserved gene and region,3,107458518,107458984,467,*,467,47,0.665952891,0.908861284,0.100642398,4.28E-36,CpGisland,TRUE,NA,NRS
26885,cg04865316,-0.00000577,0.00000164,-3.527514844,0.000482913,loss,ns,0.00000168,0.00000278,0.602763533,0.547106696,pos,ns,-0.001271926,0.000814601,-1.561408412,0.119447673,neg,ns,0.922822306,0.0000172,0.000028,0.613553709,0.53996021,pos,ns,0.96380308,Prdm16,Prdm16_Intron,4,154456598,154456647,154456646,154456647,50,-,ACTAAGCACAAGTGCACTATTTTATTTCAAAGAATATTATGAACTGCACG,"Intron (Prdm16-201/Prdm16, intron 3 of 16)",4,154316125,154636866,320742,2,Prdm16-201,180219,Prdm16-201;Prdm16-202;Prdm16-203;Prdm16-204;Prdm16-205;Prdm16-206;Prdm16-210;Prdm16-207,Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,32,70673,ENSMUSG00000039410,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8925,cg12811128,0.0000198,0.00000786,2.515615017,0.012387731,gain,ns,-0.00000805,0.0000134,-0.602761555,0.54710801,neg,ns,0.017017128,0.003914011,4.347746543,0.0000187,pos,ns,4.728670528,-0.000730442,0.000134603,-5.426658046,0.000000116,neg,yes,0.100430429,Psd,Psd_Exon,19,46314751,46314800,46314799,46314800,50,-,TGGGGTTGGGGTCGGCCAACTCAGACAGAGAGCGTCTCAGCTCCTCCTCG,"Exon (Psd-211/Psd, exon 3 of 8)",19,46312087,46317591,5505,2,Psd-211,2791,Nfkb2-206;Nfkb2-201;Nfkb2-204;Nfkb2-202;Nfkb2-205;Nfkb2-207;Nfkb2-208;Psd-211;Psd-208;Psd-201;Psd-202;Psd-210;Psd-214,Nfkb2;Nfkb2;Nfkb2;Nfkb2;Nfkb2;Nfkb2;Nfkb2;Psd;Psd;Psd;Psd;Psd;Psd,10431;10007;9951;9055;8753;8753;8753;0;0;0;0;0;-447,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,6,73728,ENSMUSG00000037126,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10375,cg00279752,-0.000034,0.00000799,-4.256501241,0.0000275,loss,ns,0.00000818,0.0000136,0.60274633,0.547118127,pos,ns,-0.001275098,0.003977597,-0.320569974,0.748752278,neg,ns,0.125661844,-0.000167427,0.000136789,-1.223976398,0.221890558,neg,ns,0.925675783,Npas3,Npas3_Intron,12,53256357,53256406,53256357,53256358,50,+,CGAAAATATGAAATAGGATGGCCTTCATATCACAAGGCCAAGGGTCTACA,"Intron (Npas3-204/Npas3, intron 1 of 10)",12,53248157,54069532,821376,1,Npas3-204,8200,Npas3-204;Npas3-201;Npas3-202;Npas3-203,Npas3;Npas3;Npas3;Npas3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,83,103,27386,ENSMUSG00000021010,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
525,cg01120624,-0.000058,0.00000671,-8.652491569,2.78E-16,loss,yes,0.00000687,0.0000114,0.602727015,0.547130961,pos,ns,-0.006819795,0.00333847,-2.042790634,0.041918711,neg,ns,1.377592078,0.000145606,0.00011481,1.268241096,0.205663477,pos,ns,0.928944595,Tox,Tox_Intron,4,6795719,6795768,6795767,6795768,50,+,CCCATTTTAATAACACCATCTGATTAAATGAAAAGACGCCTTGCTGATCG,"Intron (Tox-201/Tox, intron 3 of 8)",4,6686353,6990799,304447,2,Tox-201,195031,Tox-201;Tox-203,Tox;Tox,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,15,252838,ENSMUSG00000041272,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21447,cg26659116,-0.000170342,0.0000322,-5.291821608,0.00000023,loss,yes,-0.000033,0.0000547,-0.602694475,0.547152585,neg,ns,0.0948097,0.016021125,5.917792931,8.64E-09,pos,ns,8.063736224,-0.003451837,0.000550965,-6.265072822,1.24E-09,neg,yes,0.76105737,Zswim6,Zswim6_Exon,13,107787841,107787890,107787841,107787842,50,-,CGGTATAAAGACAGTGCCACAACATGGGCACAATAAAATATGTCCTTGTT,"Exon (Zswim6-204/Zswim6, exon 2 of 13)",13,107724617,107890064,165448,2,Zswim6-204,102174,Zswim6-204;Zswim6-201,Zswim6;Zswim6,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,14,26,67263,ENSMUSG00000032846,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21453,cg19786084,0.0000329,0.00000501,6.561835336,2.23E-10,gain,yes,-0.00000513,0.00000851,-0.602583618,0.547226254,neg,ns,0.003964954,0.002493446,1.590150229,0.112820205,pos,ns,0.947613117,-0.000011,0.0000857,-0.128844629,0.897564142,neg,ns,0.081654327,Cacng4,Cacng4_Promoter,11,107793777,107793826,107793777,107793778,50,+,CGCCCCAGGATGGCCAGTTCCCATAGCAATAGCACAGACACCGGTTGCCA,Promoter (<=1kb),11,107732357,107794557,62201,2,Cacng4-201,731,Cacng4-201,Cacng4,0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,3,8,54377,ENSMUSG00000020723,conserved gene and region,11,107793647,107794919,1273,*,1273,155,0.743912019,0.885336743,0.121759623,7.27E-132,CpGisland,TRUE,U3,Pr-B
6263,cg25161425,0.00000455,0.00000377,1.207447399,0.228180327,gain,ns,0.00000386,0.00000641,0.602521291,0.547267674,pos,ns,0.002455485,0.001877287,1.307996706,0.191843501,pos,ns,0.717052909,-0.00002,0.0000646,-0.309140682,0.757422183,neg,ns,0.050821492,Tenm2,Tenm2_Exon,11,36677475,36677524,36677523,36677524,50,+,CAGCTGAAGGCTTCCTTCCCTTGTTAGCAGCGTGCAGCATCTCTAGCTCG,"Exon (Tenm2-205/Tenm2, exon 1 of 9)",11,36006656,37235882,1229227,2,Tenm2-202,558358,Tenm2-202;Tenm2-208;Tenm2-201;Tenm2-204;Tenm2-205,Tenm2;Tenm2;Tenm2;Tenm2;Tenm2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,21,84,23964,ENSMUSG00000049336,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19753,cg18550387,0.0000011,0.00000907,0.120703899,0.904003766,gain,ns,0.00000929,0.0000154,0.602479243,0.547295619,pos,ns,-0.004303162,0.004516066,-0.952856263,0.341405263,neg,ns,0.466729788,-0.000139509,0.000155307,-0.89827731,0.369734871,neg,ns,0.738287565,Scn8a,Scn8a_Exon,15,101032205,101032254,101032253,101032254,50,+,TGAGGACAATATCTACATGTACATCTATTTTGTCATCTTCATCATCTTCG,"Exon (Scn8a-201/Scn8a, exon 24 of 27)",15,100870683,101045929,175247,1,Scn8a-201,161522,Scn8a-201;Scn8a-204;Scn8a-213;Scn8a-203;Scn8a-205;Scn8a-208;Scn8a-209,Scn8a;Scn8a;Scn8a;Scn8a;Scn8a;Scn8a;Scn8a,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,18,24,20273,ENSMUSG00000023033,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14110,cg15958792,0.0000825,0.0000121,6.814441991,4.94E-11,gain,yes,0.0000124,0.0000206,0.602443648,0.547319276,pos,ns,0.012894846,0.006024971,2.140233835,0.033116047,pos,ns,1.479961503,-0.000102685,0.000207198,-0.495590281,0.620534646,neg,ns,0.102881223,Hoxd11,Hoxd11_Intron,2,74682228,74682277,74682276,74682277,50,-,ACGTGACATAATTACCACCAGAATCAATCAAGATGAATTGCACGTCAGCG,"Intron (Hoxd11-201/Hoxd11, intron 1 of 1)",2,74679557,74687016,7460,1,Hoxd11-201,2671,Hoxd11-201;Hoxd11-202;Hoxd12-201,Hoxd11;Hoxd11;Hoxd12,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,14,15431,ENSMUSG00000042499,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8247,cg20138186,-0.0000453,0.0000111,-4.075496385,0.0000584,loss,ns,-0.0000114,0.0000189,-0.602440121,0.54732162,neg,ns,-0.004223153,0.005533898,-0.763142665,0.445958666,neg,ns,0.350705392,-0.000181434,0.00019031,-0.953356775,0.341152102,neg,ns,0.646194792,Slf2,Slf2_Intergenic_upstream,19,44900527,44900576,44900527,44900528,50,+,CGTGCTTCTGCCAAGCCAGCAATAACAAAAACTTATTTTTTGCCAGGGAA,Distal Intergenic,19,44931151,44983188,52038,1,Slf2-201,-30575,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,15,17,226151,ENSMUSG00000036097,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
13051,cg19608474,-0.00000853,0.00000697,-1.223264102,0.222159008,loss,ns,-0.00000714,0.0000118,-0.602425644,0.547331242,neg,ns,0.009777296,0.003470876,2.816953752,0.005159215,pos,ns,2.287416399,-0.000141777,0.000119363,-1.187778599,0.235829904,neg,ns,0.842820871,Gm11404,Gm11404_Intergenic_upstream,4,69346448,69346497,69346448,69346449,50,-,CGATTGAGTTAATCTTTGAAGAAAACAGAAAATACTGTAACAATAAAGGC,Distal Intergenic,4,69291621,69295121,3501,2,Gm11404-201,-51376,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,100418187,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24389,cg07823695,0.0000194,0.00000915,2.119559056,0.034837764,gain,ns,-0.00000936,0.0000155,-0.602295186,0.547417951,neg,ns,-0.003902581,0.004552436,-0.857251229,0.391968283,neg,ns,0.406749074,0.0000666,0.000156558,0.425581089,0.670708421,pos,ns,0.598763373,Chd4,Chd4_Exon,6,125120334,125120383,125120382,125120383,50,+,AAAAGAATCCGTAAACAGGTCAACTACAATGATGGCTCCCAGGAGGACCG,"Exon (Chd4-203/Chd4, exon 26 of 39)",6,125095981,125130585,34605,1,Chd4-203,24353,Chd4-203;Chd4-201;Chd4-202;Chd4-204;Chd4-205,Chd4;Chd4;Chd4;Chd4;Chd4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,15,107932,ENSMUSG00000063870,conserved gene but different region,6,125120280,125120502,223,*,223,12,0.596412556,0.612918003,0.053811659,0.00000182,CpGisland,TRUE,U10,Tr-S
22032,cg11354533,-0.0000216,0.00000543,-3.97657415,0.0000871,loss,ns,-0.00000556,0.00000923,-0.602287492,0.547423065,neg,ns,-0.001051458,0.002704528,-0.388776831,0.69770813,neg,ns,0.156326216,-0.000152288,0.000093,-1.63735314,0.10257136,neg,ns,0.809812631,Dio3,Dio3_Intron,12,110228131,110228180,110228179,110228180,50,-,TTCAACAATGTGCCAAAAGCTTCTGGAATTGACAGGTTCGGTTTGCCACG,"Intron (Gm40576-201/Gm40576-201, intron 2 of 5)",12,110279068,110281097,2030,1,Dio3-202,-50937,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,107585,ENSMUSG00000075707,mapped to different genes,12,110228169,110228301,133,*,133,9,0.609022556,0.743478261,0.067669173,0.00000959,CpGisland,TRUE,U11,Tr-P
10998,cg00622374,-0.00000419,0.00000129,-3.251172367,0.001275806,loss,ns,0.00000132,0.00000219,0.602252994,0.547445995,pos,ns,0.000327206,0.000641848,0.509786989,0.610563433,pos,ns,0.214269209,-0.0000185,0.0000221,-0.837053641,0.403207234,neg,ns,0.962519891,Gm5183,Gm5183_Intergenic_downstream,12,56114475,56114524,56114475,56114476,50,-,CGCAGTGGGAAATCGGGACAATGTTGTCTCCTTTCAAAGTAATTCATAAT,Distal Intergenic,12,56050533,56051161,629,1,Gm5183-201,63991,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,2,382600,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23454,cg25249425,0.0000335,0.00000754,4.439416562,0.0000126,gain,ns,0.00000771,0.0000128,0.602252131,0.547446568,pos,ns,0.000575164,0.003750762,0.153345994,0.878225202,pos,ns,0.056394104,0.0000513,0.000128988,0.397378947,0.691361507,pos,ns,0.513764749,Gm9267,Gm9267_Intergenic_upstream,12,118500464,118500513,118500512,118500513,50,-,TTTCAACTTGCAGCAAGATTGAAGCAAACTGCTCCAATTTACTGCTCCCG,Distal Intergenic,12,118602677,118603080,404,1,Gm9267-201,-102213,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,20,668611,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10527,cg12160825,0.0000416,0.00000863,4.821369827,0.00000224,gain,ns,0.00000883,0.0000147,0.60224317,0.547452525,pos,ns,0.021129791,0.00429528,4.919305167,0.00000141,pos,ns,5.850140834,-0.000610151,0.000147714,-4.130614312,0.0000466,neg,ns,0.395060375,Npas3,Npas3_Exon,12,54003491,54003540,54003539,54003540,50,-,ACTCTTGAGCGTTCCTTTTTCATCCGAATGAAATCTACTCTGACCAAACG,"Exon (Npas3-204/Npas3, exon 6 of 11)",12,53248157,54069532,821376,1,Npas3-204,755334,Npas3-204;Npas3-201;Npas3-203,Npas3;Npas3;Npas3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,13,103,27386,ENSMUSG00000021010,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5600,cg08122075,-0.0000339,0.00000604,-5.608064643,4.53E-08,loss,yes,-0.00000618,0.0000103,-0.60211802,0.547535715,neg,ns,0.004227441,0.003007946,1.405424172,0.160896557,pos,ns,0.79345325,-0.000212509,0.000103443,-2.054357488,0.040779213,neg,ns,0.84031361,Pbx3,Pbx3_Exon,2,34302753,34302802,34302801,34302802,50,-,TTTCACTTTTAATCAAGCTTCCTGTTGTAAGAGCTCAGCAGACAGTGACG,"Exon (C79798-201/C79798-201, exon 2 of 2)",2,34171457,34372038,200582,2,Pbx3-202,69236,Pbx3-202;Pbx3-201;Pbx3-206;Pbx3-207;Pbx3-209;Pbx3-204;Pbx3-205;Pbx3-203,Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,82,18516,ENSMUSG00000038718,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17165,cg04976462,-0.0000125,0.0000035,-3.555941429,0.000435416,loss,ns,0.00000358,0.00000595,0.602070534,0.547567281,pos,ns,0.002545118,0.001744354,1.459060303,0.14556101,pos,ns,0.836954938,-0.000112326,0.00006,-1.872472789,0.062082413,neg,ns,0.924289177,Sall1,Sall1_Intergenic_downstream,8,88973589,88973638,88973589,88973590,50,-,CGTGTAGAATTCATGCTTGAATTCATTCAAAAAATAGCATGCAGTATAAT,Distal Intergenic,8,89027235,89044162,16928,2,Sall1-201,70573,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,15,58198,ENSMUSG00000031665,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9580,cg21658655,-0.00000605,0.00000179,-3.3850393,0.000803244,loss,ns,0.00000183,0.00000304,0.602037053,0.547589538,pos,ns,-0.000866664,0.000890056,-0.97371917,0.330955171,neg,ns,0.480230829,-0.0000255,0.0000306,-0.834371211,0.404714331,neg,ns,0.953762693,Bicd2,Bicd2_threeUTR,13,49385570,49385619,49385570,49385571,50,+,CGGCATTGTGGTTCATGTTTGAAATTACAGATTTTAAATGCCATGTTCAT,3' UTR,13,49341585,49387019,45435,1,Bicd2-201,43985,Bicd2-201;Bicd2-202;Bicd2-203;Bicd2-204,Bicd2;Bicd2;Bicd2;Bicd2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,3,76895,ENSMUSG00000037933,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24812,cg14271389,0.000100658,0.0000137,7.345920348,1.82E-12,gain,yes,-0.000014,0.0000233,-0.602023927,0.547598265,neg,ns,0.027361089,0.006819905,4.011945975,0.0000755,pos,ns,4.121783856,-0.000643163,0.000234536,-2.742280016,0.006456074,neg,ns,0.18708772,Ikzf4,Ikzf4_Exon,10,128645707,128645756,128645755,128645756,50,+,CTGCCTGAACTTACATTATCCTTCCCTTGCCGGTGAGACCCTGGGGTGCG,Promoter (<=1kb),10,128630843,128645991,15149,2,Ikzf4-201,235,Ikzf4-201;Ikzf4-209;Ikzf4-210;Ikzf4-203;Ikzf4-208;Ikzf4-204;Ikzf4-206;Ikzf4-207;Ikzf4-205;Ikzf4-202,Ikzf4;Ikzf4;Ikzf4;Ikzf4;Ikzf4;Ikzf4;Ikzf4;Ikzf4;Ikzf4;Ikzf4,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,6,22781,ENSMUSG00000002578,conserved gene and region,10,128645694,128645819,126,*,126,13,0.642857143,1.00244798,0.103174603,2.07E-10,CpGisland,TRUE,NA,NRS
2600,cg10488199,0.0000168,0.0000112,1.49776075,0.135212938,gain,ns,-0.0000115,0.000019,-0.602015257,0.547604028,neg,ns,-0.012083421,0.005573543,-2.167996436,0.030919548,neg,ns,1.50976686,0.000111784,0.000191674,0.583199703,0.560182893,pos,ns,0.673049719,Il17a,Il17a_Exon,1,20682819,20682868,20682819,20682820,50,-,CGTCTTCCTGAGAGGTTTGGTCCCCTTCAACCAGCTACAGCAGGGCTGGC,"Exon (Gm28653-202/Gm28653-202, exon 3 of 3)",1,20730905,20734496,3592,1,Il17a-201,-48086,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,16171,ENSMUSG00000025929,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14920,cg09722599,0.0000241,0.0000122,1.970579875,0.04966147,gain,ns,0.0000125,0.0000208,0.601842877,0.54771863,pos,ns,0.015371883,0.006090073,2.524088341,0.012099083,pos,ns,1.917247542,-0.000558536,0.000209437,-2.666843242,0.008058686,neg,ns,0.412058722,Pax3,Pax3_Intron,1,78167886,78167935,78167934,78167935,50,-,TTAACTGTTTCATTTTGTTGCTATTTGCAGTTTTCTTGGCTAATACTCCG,"Intron (Pax3-201/Pax3, intron 4 of 8)",1,78101267,78196838,95572,2,Pax3-201,28903,Pax3-201;Pax3-202,Pax3;Pax3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,17,18505,ENSMUSG00000004872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16295,cg03131267,-0.00000212,0.00000166,-1.278536384,0.202016727,loss,ns,-0.00000169,0.00000281,-0.601832064,0.54772582,neg,ns,0.000843091,0.000824388,1.022687472,0.307253036,pos,ns,0.512503817,-0.0000235,0.0000284,-0.828656996,0.407936072,neg,ns,0.959309609,Lrpprc,Lrpprc_Intron,17,84716812,84716861,84716812,84716813,50,+,CGTATGTTAAAAATATTGCTGCAAAATATCGACCTGGAGACAGCTTTTGT,"Intron (Lrpprc-201/Lrpprc, intron 30 of 37)",17,84705247,84790558,85312,2,Lrpprc-201,73697,Lrpprc-201;Lrpprc-207,Lrpprc;Lrpprc,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,15,72416,ENSMUSG00000024120,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6684,cg22689365,0.00000614,0.00000503,1.220136263,0.223340595,gain,ns,0.00000514,0.00000855,0.601726433,0.547796052,pos,ns,0.002810552,0.002503849,1.122492699,0.262521635,pos,ns,0.580834899,0.000103982,0.0000861,1.207588906,0.228125943,pos,ns,0.90031916,Dennd1a,Dennd1a_Intron,2,38013829,38013878,38013877,38013878,50,-,GGCTTCCCTTGAGCACAGTTTGAAACAAAATAATGCAGTTTGTTCCTACG,"Intron (Dennd1a-201/Dennd1a, intron 9 of 21)",2,37798991,38287375,488385,2,Dennd1a-201,273497,Dennd1a-201;Dennd1a-207;Dennd1a-210;Dennd1a-204,Dennd1a;Dennd1a;Dennd1a;Dennd1a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,46,227801,ENSMUSG00000035392,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5060,cg05942217,-0.00000526,0.00000154,-3.423243106,0.00070196,loss,ns,-0.00000157,0.00000261,-0.601664635,0.547837142,neg,ns,-0.001374718,0.000765048,-1.796904658,0.073324057,neg,ns,1.134753515,0.0000338,0.0000263,1.286489702,0.199232134,pos,ns,0.966628432,Sgms1,Sgms1_threeUTR,19,32125291,32125340,32125291,32125292,50,+,CGTCCACAGTGTAGTGGTCATGCGCTAAGAGAATACAGAAGATTCCAACT,3' UTR,19,32122727,32388512,265786,2,Sgms1-201,263172,Sgms1-201;Sgms1-212;Sgms1-209;Sgms1-215;Sgms1-214;Sgms1-206,Sgms1;Sgms1;Sgms1;Sgms1;Sgms1;Sgms1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,8,208449,ENSMUSG00000040451,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16078,cg01359274,-0.00000223,0.00000213,-1.046736942,0.296036369,loss,ns,-0.00000218,0.00000363,-0.601638266,0.547854675,neg,ns,0.001273908,0.001062294,1.199204807,0.231364132,pos,ns,0.635703969,-0.0000492,0.0000365,-1.346040826,0.179272851,neg,ns,0.95108479,Acaca,Acaca_Intron,11,84362132,84362181,84362132,84362133,50,+,CGAGAGATCAGTGTATCAGTCAGAGAGAGGGCAAATGGAAAGAGACAGCA,"Intron (Acaca-202/Acaca, intron 45 of 55)",11,84173122,84401651,228530,1,Acaca-202,189010,Acaca-202;Acaca-201,Acaca;Acaca,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,28,28,107476,ENSMUSG00000020532,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
484,cg13219964,-0.00000113,0.00000118,-0.957498865,0.339061646,loss,ns,0.0000012,0.000002,0.601612678,0.54787169,pos,ns,0.000219539,0.000585015,0.375271515,0.707715178,pos,ns,0.15014149,-0.00000783,0.0000201,-0.389320646,0.697306269,neg,ns,0.96785909,Epc1,Epc1_Exon,18,6449069,6449118,6449069,6449070,50,+,CGCCATCTACATGATTTGATATTGACTAGTATCTGACTGAGGTCTTTAGA,"Exon (Epc1-203/Epc1, exon 10 of 14)",18,6435951,6516108,80158,2,Epc1-203,66990,Epc1-203;Epc1-201,Epc1;Epc1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,8,13831,ENSMUSG00000024240,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10348,cg12932612,0.00000408,0.00000467,0.874178744,0.382697634,gain,ns,-0.00000477,0.00000793,-0.601547852,0.547914797,neg,ns,0.00254216,0.002324388,1.09369031,0.274939938,pos,ns,0.560762169,-0.0000553,0.0000799,-0.691199132,0.489957679,neg,ns,0.928564808,Fmnl2,Fmnl2_Exon,2,53130481,53130530,53130481,53130482,50,-,CGGTGGTGGAGGATACACAGAGCTGGCAAGCATCACTTTTTACTTAGCTT,"Exon (Fmnl2-204/Fmnl2, exon 26 of 27)",2,52857860,53132203,274344,1,Fmnl2-205,272621,Fmnl2-205;Fmnl2-201;Fmnl2-203;Fmnl2-204;Fmnl2-202;Prpf40a-201,Fmnl2;Fmnl2;Fmnl2;Fmnl2;Fmnl2;Prpf40a,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,71409,ENSMUSG00000036053,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15942,cg08628894,0.0000138,0.0000045,3.076643294,0.002280179,gain,ns,-0.0000046,0.00000765,-0.601428523,0.547994151,neg,ns,0.00141497,0.002240216,0.631622423,0.528099109,pos,ns,0.277284565,-0.00010167,0.000077,-1.319688122,0.187912917,neg,ns,0.8599465,Zfp638,Zfp638_Exon,6,83928951,83929000,83928999,83929000,50,+,AGGCCTGGATCTATGGGTCTCCCAAGATTTTACCCAGCAGGGAGAGCACG,"Exon (Zfp638-217/Zfp638, exon 2 of 2)",6,83867109,83929122,62014,1,Zfp638-217,61842,Zfp638-217;Zfp638-205;Zfp638-220;Zfp638-218;Zfp638-213;Zfp638-215;Zfp638-207;Zfp638-203;Zfp638-202;Zfp638-201;Zfp638-211;Zfp638-206;Zfp638-212,Zfp638;Zfp638;Zfp638;Zfp638;Zfp638;Zfp638;Zfp638;Zfp638;Zfp638;Zfp638;Zfp638;Zfp638;Zfp638,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,3,18139,ENSMUSG00000030016,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12423,cg10436531,-0.000000746,0.00000646,-0.115510958,0.908114922,loss,ns,0.0000066,0.000011,0.601219534,0.548133142,pos,ns,-0.005171568,0.003216219,-1.607965125,0.108860768,neg,ns,0.963128604,0.000122829,0.000110605,1.110513789,0.267638311,pos,ns,0.935976451,Gm13750,Gm13750_Intergenic_downstream,1,64156553,64156602,64156601,64156602,50,-,GATGGGGCCTTTATGTGATATCAGGCCAGTGATCCGCAGACAATGTCTCG,Distal Intergenic,1,64150201,64150665,465,1,Gm13750-201,6401,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,2,241074,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23856,cg25882772,0.0000466,0.00000455,10.24162509,2.15E-21,gain,yes,-0.00000465,0.00000773,-0.601082148,0.548224522,neg,ns,0.007112065,0.002264238,3.141041125,0.001845912,pos,ns,2.733789097,-0.000199646,0.0000779,-2.563933584,0.010820508,neg,ns,0.077387865,En1,En1_Intron,1,120605057,120605106,120605057,120605058,50,-,CGGGCTCCCTGAACCTCCGAAAAGCTGCTTTGATTGACTCGCCTGATGGA,"Intron (En1-201/En1, intron 1 of 1)",1,120602418,120607992,5575,1,En1-201,2639,En1-201,En1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,36,13798,ENSMUSG00000058665,conserved gene and region,1,120604932,120605097,166,*,166,13,0.620481928,0.815570673,0.078313253,7.04E-09,CpGisland,TRUE,U13,Hc-P
17420,cg26383280,0.0000206,0.0000066,3.116410633,0.002002095,gain,ns,-0.00000674,0.0000112,-0.601021409,0.548264924,neg,ns,0.003277376,0.003286249,0.997299914,0.319396769,pos,ns,0.495669482,-0.0000857,0.000113014,-0.758621768,0.44865523,neg,ns,0.920462196,Nrxn3,Nrxn3_Intron,12,90199278,90199327,90199326,90199327,50,-,AAACCCTCATTTTTAAAGCCTGCAAATAAATGTTCCTTAAATGATAATCG,"Intron (Nrxn3-213/Nrxn3, intron 15 of 18)",12,88722986,90332878,1609893,1,Nrxn3-213,1476292,Nrxn3-213;Nrxn3-208;Nrxn3-205;Nrxn3-201;Nrxn3-210;Nrxn3-214;Nrxn3-203;Nrxn3-202,Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,39,18191,ENSMUSG00000066392,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3275,cg09674317,0.00000605,0.00000402,1.506271977,0.133015648,gain,ns,0.0000041,0.00000683,0.601008908,0.54827324,pos,ns,0.000463133,0.002000422,0.231517866,0.817065249,pos,ns,0.087743261,0.0000215,0.0000688,0.312791581,0.754649331,pos,ns,0.904048493,Cadps2,Cadps2_Intron,6,23451541,23451590,23451541,23451542,50,+,CGGTTAACATGTGGCAGAAGTAATCATCCACTTGTGAAAATGATTTTCGG,"Intron (Cadps2-213/Cadps2, intron 9 of 29)",6,23262773,23839137,576365,2,Cadps2-213,387547,Cadps2-213;Cadps2-205;Cadps2-212;Cadps2-201;Cadps2-209;Cadps2-206;Cadps2-207;Cadps2-202;Cadps2-204,Cadps2;Cadps2;Cadps2;Cadps2;Cadps2;Cadps2;Cadps2;Cadps2;Cadps2,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,15,320405,ENSMUSG00000017978,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1856,cg20445108,-0.00000104,0.0000031,-0.336514436,0.736710649,loss,ns,0.00000316,0.00000526,0.600707429,0.548473799,pos,ns,-0.004831422,0.001542344,-3.132517993,0.001898638,neg,ns,2.721557877,0.0000182,0.000053,0.343767701,0.731254037,pos,ns,0.873827289,Psat1,Psat1_Intergenic_downstream,19,15615539,15615588,15615587,15615588,50,-,CCATTAGTCCCATTTGTAACTACTCAGCGAAAGGCTTGTCAGTCACCGCG,Distal Intergenic,19,15905130,15909712,4583,2,Psat1-204,294173,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,14,17,107272,ENSMUSG00000024640,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
933,cg00662931,0.000155292,0.0000128,12.0914848,7.79E-28,gain,yes,-0.0000131,0.0000218,-0.600677105,0.548493974,neg,ns,0.023165001,0.006392151,3.623975712,0.000338932,pos,ns,3.469887587,-0.000737658,0.000219826,-3.355651228,0.000890259,neg,ns,0.060276497,Gata3,Gata3_Intron,2,9881141,9881190,9881141,9881142,50,+,CGTTGCTCTTTTGATGGCCCGCGCCGGCCAGTCTCGCCGACGCCACACTG,"Intron (Gata3-202/Gata3, intron 1 of 2)",2,9874702,9890034,15333,2,Gata3-202,8844,4930412O13Rik-201;4930412O13Rik-202;9230102O04Rik-202;9230102O04Rik-201;Gata3-201;Gata3-202;Gata3-204;Gata3-203,4930412O13Rik;4930412O13Rik;9230102O04Rik;9230102O04Rik;Gata3;Gata3;Gata3;Gata3,-62;-1446;8350;2803;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,21,14462,ENSMUSG00000015619,conserved gene and region,2,9881093,9881209,117,*,117,13,0.64957265,1.054054054,0.111111111,7.68E-11,CpGisland,TRUE,U3,Pr-B
12286,cg05886164,-0.00000506,0.00000201,-2.513741128,0.012452388,loss,ns,-0.00000205,0.00000342,-0.60067107,0.548497989,neg,ns,-0.0000303,0.001002167,-0.03023457,0.975899433,neg,ns,0.010594934,-0.0000514,0.0000345,-1.490043295,0.137229571,neg,ns,0.962766715,Fign,Fign_Intergenic_downstream,2,63850130,63850179,63850130,63850131,50,-,CGGGAGTACCCATTAGGGTGGTCTAATGTTGCTCTGGAGAAATGTGATGG,Distal Intergenic,2,63980447,64097988,117542,2,Fign-202,247858,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,28,84,60344,ENSMUSG00000075324,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23144,cg14715438,-0.00000408,0.00000125,-3.255294036,0.001258041,loss,ns,0.00000128,0.00000213,0.600583968,0.548555942,pos,ns,0.000376478,0.000623132,0.604171295,0.546171653,pos,ns,0.262670844,-0.0000112,0.0000214,-0.522740045,0.601528556,neg,ns,0.968164018,Rnf220,Rnf220_Intron,4,117349727,117349776,117349727,117349728,50,+,CGTCAGCCCATAATTTCATGAAGAAGTCAGGGGACCGTATCCCTCTTATT,"Intron (Rnf220-201/Rnf220, intron 2 of 14)",4,117271463,117497052,225590,2,Rnf220-201,147276,Rnf220-201;Rnf220-202;Rnf220-207,Rnf220;Rnf220;Rnf220,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6938,cg18568529,0.00000445,0.00000197,2.261520374,0.024419641,gain,ns,0.00000201,0.00000334,0.600579584,0.548558859,pos,ns,0.002253414,0.000978755,2.302326498,0.021979079,pos,ns,1.657990508,0.00000559,0.0000337,0.166048865,0.868226739,pos,ns,0.944400795,Rev3l,Rev3l_threeUTR,10,39846176,39846225,39846176,39846177,50,-,CGTGGAAATCTCCAAATGTTAGAACAGCTGGACCTGATTGGGAAAACCAG,3' UTR,10,39732118,39875211,143094,1,Rev3l-201,114058,Rev3l-201;Rev3l-204;Rev3l-207;Rev3l-205;Rev3l-206,Rev3l;Rev3l;Rev3l;Rev3l;Rev3l,0;0;0;0;17902,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,7,19714,ENSMUSG00000019841,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14499,cg00800848,-0.00000097,0.00000242,-0.401317501,0.688462875,loss,ns,-0.00000246,0.0000041,-0.600267453,0.548766559,neg,ns,0.000261536,0.001202496,0.217494407,0.827966148,pos,ns,0.08198742,0.0000212,0.0000414,0.511534064,0.609341307,pos,ns,0.941574119,Scrib,Scrib_Exon,15,76061755,76061804,76061755,76061756,50,+,CGAGCAGGCTCTATCAGCAGGTTATTGGCCTGGTCAAACGACACTCCCTG,Promoter (<=1kb),15,76047158,76062719,15562,2,Scrib-204,915,Scrib-204;Scrib-201;Scrib-202;Scrib-203,Scrib;Scrib;Scrib;Scrib,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,105782,ENSMUSG00000022568,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23618,cg01910711,0.000000492,0.000000461,1.066672291,0.286949852,gain,ns,0.00000047,0.000000783,0.600266251,0.548767359,pos,ns,0.0000253,0.000229361,0.11011279,0.912391174,pos,ns,0.039818925,-0.00000235,0.00000789,-0.297343625,0.766403331,neg,ns,0.011823698,Dll4,Dll4_Intron,2,119327298,119327347,119327346,119327347,50,+,CTCAGAGCACAATTGCGTTTCCTGCGGGTTATTTTTGGCGTGGGAACGCG,"Intron (Dll4-201/Dll4, intron 3 of 10)",2,119325784,119335962,10179,1,Dll4-201,1514,Dll4-201;Dll4-202,Dll4;Dll4,0;-1191,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,20,54485,ENSMUSG00000027314,conserved gene but different region,2,119327100,119327430,331,*,331,31,0.637462236,0.947985957,0.093655589,5.80E-23,CpGisland,TRUE,U3,Pr-B
10049,cg15694685,0.000000577,0.00000108,0.536498955,0.591998544,gain,ns,0.0000011,0.00000183,0.600234478,0.548788504,pos,ns,0.000801339,0.00053563,1.496069427,0.135652914,pos,ns,0.867570872,-0.0000149,0.0000184,-0.807048474,0.420257313,neg,ns,0.026086181,Maml3,Maml3_fiveUTR,3,52104196,52104245,52104244,52104245,50,+,CTATCAGCCTCCTCCTTGGGTCCAAGGATTAAAATAGTTTAAGTGGAACG,Promoter (<=1kb),3,51685907,52105076,419170,2,Maml3-202,831,Maml3-202,Maml3,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,14,32,433586,ENSMUSG00000061143,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25302,cg08280407,-0.00000902,0.000008,-1.128120472,0.260141374,loss,ns,0.00000815,0.0000136,0.600185856,0.548820862,pos,ns,0.004080106,0.003980087,1.025129878,0.306101165,pos,ns,0.514135018,-0.000170887,0.000136875,-1.248492392,0.212792855,neg,ns,0.618647855,Btk,Btk_Exon,X,134549512,134549561,134549512,134549513,50,-,CGCATCTCCCTCAGGTAGTTCAGGAGGCAGCCATTGGCCATGTACTCAGT,"Exon (Btk-201/Btk, exon 15 of 19)",20,134542336,134583140,40805,2,Btk-201,33579,Btk-201;Btk-202;Btk-204;Gm15154-201,Btk;Btk;Btk;Gm15154,0;0;0;-2321,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,12229,ENSMUSG00000031264,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23025,cg09351579,-0.0000466,0.0000228,-2.041511407,0.04204638,loss,ns,-0.0000233,0.0000388,-0.60012744,0.54885974,neg,ns,-0.028346996,0.011355832,-2.496250123,0.013070531,neg,ns,1.883706753,0.000826909,0.000390526,2.117423869,0.035019874,pos,ns,0.742512844,Gpc6,Gpc6_Intron,14,116938532,116938581,116938532,116938533,50,+,CGAGGCCTGTTACCTTAAGGTTCTAATGGCCTTTTAACAGTGTTTCCAGC,"Intron (Gpc6-203/Gpc6, intron 1 of 3)",14,116925315,117627198,701884,1,Gpc6-203,13217,Gpc6-203;Gpc6-202;Gpc6-204;Gpc6-201,Gpc6;Gpc6;Gpc6;Gpc6,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,5,23888,ENSMUSG00000058571,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16353,cg24988263,0.00000901,0.000016,0.564750616,0.572651826,gain,ns,-0.0000163,0.0000271,-0.600028557,0.548925553,neg,ns,0.015605769,0.007942833,1.964760921,0.050334777,pos,ns,1.298131851,-0.000602264,0.000273153,-2.204856252,0.028198289,neg,ns,0.325384562,Nfix,Nfix_Intron,8,84770748,84770797,84770796,84770797,50,+,GGCATAATGTAAACACACTTCTGCCTTGCTTAATCACAGAGTGCCGCCCG,"Intron (Nfix-204/Nfix, intron 2 of 10)",8,84704712,84773396,68685,2,Nfix-204,2599,Nfix-204;Nfix-201;Nfix-202;Nfix-203;Nfix-205,Nfix;Nfix;Nfix;Nfix;Nfix,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,49,18032,ENSMUSG00000001911,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13827,cg25147090,-0.00000201,0.00000526,-0.381393551,0.703172514,loss,ns,-0.00000536,0.00000894,-0.600004145,0.548941801,neg,ns,-0.002758689,0.00261951,-1.053131904,0.293100703,neg,ns,0.53298314,-0.0000252,0.0000901,-0.280008356,0.779657843,neg,ns,0.881499747,Slitrk3,Slitrk3_Exon,3,73048537,73048586,73048537,73048538,50,-,CGGCTTGGTTTGAAGTTTGGCCCTTAACTCGAGGTAATCACTTTTTTGGG,"Exon (Slitrk3-202/Slitrk3, exon 2 of 2)",3,73047265,73056943,9679,2,Slitrk3-202,8357,Slitrk3-202;Slitrk3-201,Slitrk3;Slitrk3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,386750,ENSMUSG00000048304,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10041,cg14331170,0.0000356,0.0000117,3.038826784,0.002577187,gain,ns,0.000012,0.0000199,0.599828884,0.54905846,pos,ns,0.005594109,0.005836759,0.958427433,0.338594146,pos,ns,0.470320554,-0.000189924,0.000200726,-0.946185562,0.344790874,neg,ns,0.427683485,Gm19197,Gm19197_Intron,17,52098682,52098731,52098730,52098731,50,+,GACAGGTCTAAACAGCCCAGGTAGATAGGATCATTTAACTATATTTAACG,"Intron (Gm19585-204/Gm19585-204, intron 2 of 2)",17,52008967,52009569,603,1,Gm19197-201,89715,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,11,100418416,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13100,cg22849022,-0.0000359,0.00000723,-4.968232342,0.00000112,loss,yes,0.00000737,0.0000123,0.599808296,0.549072165,pos,ns,-0.002673739,0.003599555,-0.742797214,0.45816696,neg,ns,0.338976232,-0.000289559,0.000123788,-2.339142121,0.019962958,neg,ns,0.890143901,Pced1c-ps,Pced1c-ps_Intergenic_downstream,1,69437132,69437181,69437180,69437181,50,+,CTATTTTTCTGTCACTTCACTTAATAGCACAGAGCATCATGTGGACTGCG,Distal Intergenic,1,69377321,69378071,751,1,Pced1c-ps-201,59811,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,2,241084,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11211,cg00065997,-0.00000885,0.00000468,-1.889807451,0.059716546,loss,ns,0.00000477,0.00000795,0.599553781,0.549241601,pos,ns,-0.003712727,0.002329628,-1.593699339,0.112022432,neg,ns,0.950695002,0.0000626,0.0000801,0.780989383,0.435404726,pos,ns,0.876560273,Brs3,Brs3_Exon,X,57045512,57045561,57045560,57045561,50,+,CTTTACAAAAGCACCCTGAACATACCTACTGAGGAACAAAGCCATGCCCG,"Exon (Brs3-201/Brs3, exon 2 of 3)",20,57043074,57048758,5685,1,Brs3-201,2438,Brs3-201,Brs3,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,12209,ENSMUSG00000031130,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14382,cg05312321,0.0000509,0.0000126,4.056688194,0.000063,gain,ns,-0.0000128,0.0000213,-0.599463507,0.549301705,neg,ns,0.02683922,0.006249455,4.29464953,0.0000234,pos,ns,4.630110532,-0.000821457,0.000214918,-3.822182787,0.000159859,neg,ns,0.409959971,Smad7,Smad7_Intergenic_downstream,18,75423483,75423532,75423483,75423484,50,+,CGACAGAGTCTAGACCAGGGTGAGAGGTTAAAACACAGCCATCCTGGGAA,Distal Intergenic,18,75374914,75394001,19088,1,Smad7-203,48569,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,19,17131,ENSMUSG00000025880,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
15914,cg12583849,0.0000249,0.00000734,3.388948452,0.000792287,gain,ns,-0.00000748,0.0000125,-0.599457383,0.549305782,neg,ns,-0.000994442,0.00365557,-0.272034698,0.785776429,neg,ns,0.104701003,0.00000229,0.000125715,0.018206263,0.985486018,pos,ns,0.884607583,Cbx3-ps3,Cbx3-ps3_Intergenic_downstream,4,83865611,83865660,83865659,83865660,50,-,TGACAAAGTGATGTTCTGTTGGGTATCGCTAGACAGACTGTTCTTTATCG,Downstream (<1kb),4,83701084,83702036,953,1,Cbx3-ps3-201,164576,Ccdc171-201;Ccdc171-206;Ccdc171-203,Ccdc171;Ccdc171;Ccdc171,0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,4,4,102641235,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5838,cg04928044,-0.00000105,0.000000639,-1.642584085,0.101482939,loss,ns,-0.000000651,0.00000109,-0.599257389,0.549438949,neg,ns,0.000457105,0.000318196,1.436551425,0.151853912,pos,ns,0.818574015,-0.0000269,0.0000109,-2.460550918,0.0144174,neg,ns,0.013548774,Etf1,Etf1_Exon,18,34931562,34931611,34931562,34931563,50,-,CGCTCACCCGCGGGCCGCCTCCAAGCTCTTAATGAGCTTCTTGATCTTCC,Promoter (<=1kb),18,34902785,34932007,29223,2,Etf1-201,396,Etf1-201,Etf1,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,3,225363,ENSMUSG00000024360,conserved gene but different region,18,34931398,34931578,181,*,181,20,0.73480663,0.819746377,0.110497238,1.78E-16,CpGisland,TRUE,U1,Pr-A
13190,cg11735605,0.00000695,0.00000229,3.040303129,0.002564955,gain,ns,-0.00000233,0.00000388,-0.598988406,0.549618077,neg,ns,0.0000618,0.001138141,0.054290006,0.956739082,pos,ns,0.019206485,-0.0000514,0.0000391,-1.312508674,0.190319465,neg,ns,0.080524479,Ikzf2,Ikzf2_fiveUTR,1,69687142,69687191,69687142,69687143,50,+,CGTGTGTTTGTGCACTGCAGTTGGTGGTGGAAACTAAGGCAGTGGATCTG,Promoter (<=1kb),1,69538582,69687245,148664,2,Ikzf2-202,54,Ikzf2-201;Ikzf2-207;Ikzf2-202;Ikzf2-204;Ikzf2-208;Ikzf2-209;Ikzf2-206;Ikzf2-203;Ikzf2-205,Ikzf2;Ikzf2;Ikzf2;Ikzf2;Ikzf2;Ikzf2;Ikzf2;Ikzf2;Ikzf2,0;0;0;0;0;0;-1842;-2606;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,14,22779,ENSMUSG00000025997,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
5019,cg18297177,-0.000000784,0.00000123,-0.638460191,0.523645545,loss,ns,-0.00000125,0.00000209,-0.598985209,0.549620206,neg,ns,0.000347552,0.000611434,0.568419985,0.570161341,pos,ns,0.244002233,0.0000135,0.000021,0.640636774,0.522231969,pos,ns,0.961672424,Wdr33,Wdr33_threeUTR,18,31835395,31835444,31835395,31835396,50,-,CGGATAATAAATTTGCTACATGCTCTGATGACGGCACTGTTAGAATCTGG,3' UTR,18,31804090,31841642,37553,1,Wdr33-202,31305,Wdr33-202;Wdr33-207;Wdr33-201;Wdr33-205,Wdr33;Wdr33;Wdr33;Wdr33,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,6,74320,ENSMUSG00000024400,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19859,cg26611783,-0.00000126,0.00000609,-0.2062069,0.836764659,loss,ns,0.0000062,0.0000103,0.598934625,0.549653896,pos,ns,-0.002319554,0.003030305,-0.765452456,0.444584541,neg,ns,0.352045642,0.0000329,0.000104212,0.315746065,0.752407725,pos,ns,0.117501779,Cycs-ps2,Cycs-ps2_Intergenic_downstream,5,101323447,101323496,101323447,101323448,50,+,CGCTGGACCTGAGGGGGCTTTGATGACACGGTTAATGAGATGTCCCAGAG,Distal Intergenic,5,101305578,101305869,292,1,Cycs-ps2-201,17869,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,10,13065,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6596,cg14844451,0.0000959,0.0000107,8.950415073,3.32E-17,gain,yes,-0.0000109,0.0000182,-0.598901015,0.549676281,neg,ns,0.008753295,0.005334886,1.640765144,0.10186036,pos,ns,0.991994795,-0.000260448,0.000183466,-1.419597034,0.156729811,neg,ns,0.077244663,Gm37013,Gm37013_Exon,18,37815823,37815872,37815871,37815872,50,-,ACTGTGTGGGCTCAGTGCCAGCTGCATCGTGCCCCTGGAGTTTGTCACCG,"Exon (Pcdhgc4-201/Pcdhgc4, exon 1 of 4)",18,36969916,37833296,863381,1,Gm37013-201,845907,Gm37013-201;Gm37388-201;Gm42416-201;Pcdhga1-201;Pcdhga10-201;Pcdhga11-201;Pcdhga12-201;Pcdhga2-201;Pcdhga3-201;Pcdhga4-201;Pcdhga5-201;Pcdhga6-201;Pcdhga7-201;Pcdhga8-201;Pcdhga9-201;Pcdhgb1-201;Pcdhgb2-202;Pcdhgb4-202;Pcdhgb5-201;Pcdhgb6-201;Pcdhgb7-201;Pcdhgb8-201;Pcdhgc3-201;Pcdhgc3-202;Pcdhgc4-201;Pcdhgc4-203;Pcdhgc4-202;Pcdhgc5-201;Pcdhgc5-203;Pcdhgc5-204;Pcdhgc5-202,Gm37013;Gm37388;Gm42416;Pcdhga1;Pcdhga10;Pcdhga11;Pcdhga12;Pcdhga2;Pcdhga3;Pcdhga4;Pcdhga5;Pcdhga6;Pcdhga7;Pcdhga8;Pcdhga9;Pcdhgb1;Pcdhgb2;Pcdhgb4;Pcdhgb5;Pcdhgb6;Pcdhgb7;Pcdhgb8;Pcdhgc3;Pcdhgc3;Pcdhgc4;Pcdhgc4;Pcdhgc4;Pcdhgc5;Pcdhgc5;Pcdhgc5;Pcdhgc5,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;-3641;-3680;-3694;-3782,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,14,100384868,ENSMUSG00000103458,mapped to different genes,18,37815685,37815993,309,*,309,20,0.563106796,0.825320513,0.064724919,7.64E-12,CpGisland,TRUE,U3,Pr-B
13285,cg03511479,-0.0000183,0.00000675,-2.715675528,0.006985035,loss,ns,0.00000687,0.0000115,0.598700507,0.549809834,pos,ns,-0.004038089,0.003361552,-1.201257131,0.230568447,neg,ns,0.637200126,0.0000744,0.000115604,0.643579169,0.520324176,pos,ns,0.840654117,1700020N15Rik,1700020N15Rik_Intron,X,69998438,69998487,69998438,69998439,50,+,CGTCTCCACATGAGCACATAACTGGCAGTGACATAAATCAATTTTTTACG,"Intron (1700111N16Rik-201/1700111N16Rik-201, intron 3 of 8)",20,69945300,69945978,679,1,1700020N15Rik-201,53138,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,75509,ENSMUSG00000059690,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17380,cg07887935,0.00000147,0.000000767,1.913981369,0.056543131,gain,ns,0.00000078,0.0000013,0.598604956,0.549873484,pos,ns,0.000203775,0.000381639,0.533946528,0.593761196,pos,ns,0.226388188,0.000000116,0.0000131,0.008873381,0.992925867,pos,ns,0.979519311,Eed,Eed_threeUTR,7,89954974,89955023,89955022,89955023,50,-,TCACAAACAGCTATAAGAATGCTGCTATCCCTGCTAAAACTGGTTTGTCG,3' UTR,7,89954654,89980976,26323,2,Eed-212,25953,Eed-212;Eed-201;Eed-205;Eed-211;Eed-204;Eed-208;Eed-206,Eed;Eed;Eed;Eed;Eed;Eed;Eed,0;0;0;0;1915;9768;7804,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,13626,ENSMUSG00000030619,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19879,cg08352048,-0.0000037,0.00000394,-0.938687555,0.348621968,loss,ns,-0.000004,0.00000669,-0.598523873,0.549927499,neg,ns,-0.001047257,0.001959764,-0.534378822,0.593462493,neg,ns,0.226606723,-0.0000413,0.0000674,-0.612091376,0.540925977,neg,ns,0.793848877,Nono,Nono_Exon,X,101444752,101444801,101444752,101444753,50,-,CGACAGCAGGAAGGATTCAAGGGAACCTTCCCTGATGCGGTATATCTCCC,"Exon (Nono-201/Nono, exon 9 of 12)",20,101429555,101448591,19037,1,Nono-201,15197,Itgb1bp2-201;Nono-201;Nono-202;Nono-205;Nono-204;Nono-207;Nono-203,Itgb1bp2;Nono;Nono;Nono;Nono;Nono;Nono,0;0;15017;2161;0;0;-1022,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,53610,ENSMUSG00000031311,conserved gene and region,X,101444701,101444790,90,*,90,8,0.6,1.038961039,0.088888889,0.00000534,CpGisland,TRUE,U10,Tr-S
25094,cg01791475,-0.00000111,0.000000656,-1.698475569,0.090421409,loss,ns,-0.000000667,0.00000112,-0.598456746,0.549972219,neg,ns,0.000362082,0.000326717,1.108244292,0.268615414,pos,ns,0.57086907,-0.0000194,0.0000112,-1.730358401,0.084561444,neg,ns,0.014825979,Abraxas2,Abraxas2_Exon,7,132859276,132859325,132859324,132859325,50,+,TTCGGGCTACACCTTCAGTGCTGTGTGTTTCCACAGCGCCAACAGCAACG,Promoter (<=1kb),7,132859307,132878614,19308,1,Abraxas2-204,0,Abraxas2-201;Abraxas2-208;Abraxas2-207;Abraxas2-202;Abraxas2-206;Abraxas2-203;Abraxas2-204;Fgfr2-217,Abraxas2;Abraxas2;Abraxas2;Abraxas2;Abraxas2;Abraxas2;Abraxas2;Fgfr2,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,109359,ENSMUSG00000030965,conserved gene and region,7,132859158,132859533,376,*,376,35,0.686170213,0.793153327,0.093085106,9.21E-26,CpGisland,TRUE,U1,Pr-A
12256,cg00075753,0.0000069,0.00000193,3.570885147,0.000412241,gain,ns,0.00000196,0.00000328,0.598357572,0.550038292,pos,ns,0.000344939,0.000961468,0.358762747,0.720016794,pos,ns,0.142657374,-0.00000951,0.0000331,-0.287710633,0.773760494,neg,ns,0.063939495,Ptch1,Ptch1_fiveUTR,13,63573431,63573480,63573479,63573480,50,-,CTGTTTCTATTAAGCAGTTCCATGGCCCTCGGCGTGGGTGGTCTGCCGCG,Promoter (<=1kb),13,63508329,63573460,65132,2,Ptch1-204,0,Ptch1-204;Ptch1-205,Ptch1;Ptch1,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,9,36,19206,ENSMUSG00000021466,conserved gene and region,13,63573460,63573518,59,*,59,7,0.694915254,1.012254902,0.118644068,0.00000415,CpGisland,TRUE,U3,Pr-B
16363,cg22559021,-0.0000314,0.00000645,-4.872219761,0.00000176,loss,yes,-0.00000656,0.000011,-0.598323194,0.550061196,neg,ns,-0.011379406,0.003211117,-3.543753375,0.000455218,neg,ns,3.341780937,0.000421043,0.00011043,3.812759019,0.000165795,pos,ns,0.864423909,Nfix,Nfix_Exon,8,84772108,84772157,84772156,84772157,50,-,GCTTGGCCAGCAGCCGGGATGCCCACTTCTGCTTGATCTCGGGCTTCTCG,"Exon (Nfix-204/Nfix, exon 2 of 11)",8,84704712,84773396,68685,2,Nfix-204,1239,Nfix-204;Nfix-201;Nfix-202;Nfix-203;Nfix-205,Nfix;Nfix;Nfix;Nfix;Nfix,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,20,49,18032,ENSMUSG00000001911,conserved gene but different region,8,84771960,84772433,474,*,474,36,0.61814346,0.805285512,0.075949367,3.03E-23,CpGisland,TRUE,U13,Hc-P
25579,cg05990519,-0.0000167,0.0000173,-0.968047431,0.333775315,loss,ns,0.0000176,0.0000293,0.598195172,0.550146496,pos,ns,0.002474182,0.008596263,0.28782071,0.773676305,pos,ns,0.111440704,0.0000624,0.000295625,0.211082054,0.832961933,pos,ns,0.676217459,Ebf3,Ebf3_Intron,7,137255109,137255158,137255109,137255110,50,+,CGCTCCTGTTGGGCTCCCAGAGACAAGCATTTTCTAGCTCTGCATGCATA,"Intron (Ebf3-204/Ebf3, intron 6 of 15)",7,137193673,137314445,120773,2,Ebf3-204,59287,Ebf3-204;Ebf3-201;Ebf3-202;Ebf3-203;Ebf3-208;Ebf3-205,Ebf3;Ebf3;Ebf3;Ebf3;Ebf3;Ebf3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,62,84,13593,ENSMUSG00000010476,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
3773,cg13110304,0.000120803,0.0000148,8.16856442,7.99E-15,gain,yes,-0.000015,0.0000251,-0.597866138,0.550365759,neg,ns,0.016083562,0.00736054,2.185106171,0.029629422,pos,ns,1.528276825,-0.000750085,0.000253128,-2.96325879,0.003279748,neg,ns,0.314092295,Zmiz1,Zmiz1_Exon,14,25318149,25318198,25318197,25318198,50,+,TCGCTCCTGGCCGGCATTTGCATAATGTCTGGGGCAGGAACAGGTGCCCG,"Exon (Gm26660-202/Gm26660-202, exon 4 of 4)",14,25459185,25538492,79308,1,Zmiz1-206,-140987,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,15,328365,ENSMUSG00000007817,mapped to different genes,14,25318011,25318209,199,*,199,15,0.683417085,0.674119241,0.075376884,6.07E-10,CpGisland,TRUE,NA,NRS
2127,cg23367670,0.0000508,0.00000695,7.317502883,2.18E-12,gain,yes,0.00000705,0.0000118,0.597802395,0.550408241,pos,ns,0.008037087,0.003456965,2.324896601,0.020722989,pos,ns,1.683547603,0.0000567,0.000118885,0.477129808,0.633605879,pos,ns,0.10971775,Bhlhe22,Bhlhe22_fiveUTR,3,18054347,18054396,18054347,18054348,50,+,CGCTGTCCCAACAGGCGAGTCTTCTTCATAATAACCTACTCAGAGATAAT,Promoter (<=1kb),3,18054174,18057517,3344,1,Bhlhe22-201,173,Bhlhe22-201,Bhlhe22,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,9,22,59058,ENSMUSG00000025128,mapped to different genes,3,18054268,18054363,96,*,96,8,0.458333333,1.590062112,0.083333333,0.00000859,CpGisland,TRUE,U3,Pr-B
25521,cg00360105,-0.00000204,0.000000908,-2.242582875,0.025630275,loss,ns,0.000000922,0.00000154,0.597776407,0.550425561,pos,ns,-0.000161916,0.000452013,-0.358211809,0.720428609,neg,ns,0.142409049,-0.00000514,0.0000155,-0.330808427,0.741012677,neg,ns,0.020210811,Jag1,Jag1_fiveUTR,2,137116356,137116405,137116356,137116357,50,+,CGTCCCGGCTCTAATATACTCCGCCGATTGGAGCATGCACGACTGGAAAA,Promoter (<=1kb),2,137081456,137116644,35189,2,Jag1-201,239,Jag1-201,Jag1,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,16,16449,ENSMUSG00000027276,conserved gene and region,2,137116081,137116396,316,*,316,43,0.727848101,1.027758869,0.136075949,2.26E-39,CpGisland,TRUE,NA,NRS
8187,cg02690681,0.0000219,0.00000763,2.874371489,0.004328211,gain,ns,-0.00000775,0.000013,-0.597749983,0.550443173,neg,ns,0.001283759,0.003796932,0.338104205,0.735513517,pos,ns,0.133409341,0.0000546,0.000130576,0.418499023,0.675872081,pos,ns,0.195071998,Pax2,Pax2_Exon,19,44835940,44835989,44835988,44835989,50,+,TTAACTTCCAGGTTCCCCTTATTATTATAGTGCCGCCCCCCGGGGCTCCG,"Exon (Pax2-203/Pax2, exon 10 of 10)",19,44756045,44837851,81807,1,Pax2-203,79895,Pax2-203;Pax2-201,Pax2;Pax2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,16,166,18504,ENSMUSG00000004231,conserved gene but different region,19,44835973,44836413,441,*,441,44,0.725623583,0.798387097,0.099773243,1.19E-33,CpGisland,TRUE,NA,NRS
6009,cg04444642,0.000118884,0.000015,7.927638778,4.07E-14,gain,yes,-0.0000152,0.0000255,-0.597657382,0.550504893,neg,ns,0.046381654,0.007463756,6.214251418,1.66E-09,pos,ns,8.779791719,0.000355428,0.000256678,1.384722413,0.167133161,pos,ns,0.593880307,Cxxc5,Cxxc5_Intron,18,35848932,35848981,35848980,35848981,50,+,AGCTCTGCCCGCCTGCCGTAATGATTTTTTAATTATGCAGCCAGTGCTCG,"Intron (Gm50371-201/Gm50371-201, intron 4 of 4)",18,35829397,35859002,29606,1,Cxxc5-202,19535,Cxxc5-202;Cxxc5-201;Cxxc5-206;Cxxc5-203,Cxxc5;Cxxc5;Cxxc5;Cxxc5,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,49,67393,ENSMUSG00000046668,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
24765,cg23336408,-0.0000835,0.000012,-6.970967485,1.90E-11,loss,yes,0.0000122,0.0000204,0.597547308,0.550578263,pos,ns,-0.019191396,0.005964154,-3.217790162,0.001428494,neg,ns,2.84512169,0.000225606,0.000205107,1.099945829,0.272209152,pos,ns,0.786603154,Ankrd52,Ankrd52_Exon,10,128388892,128388941,128388892,128388893,50,-,CGTGCCCAGGACATGAAGATTGTCTGGAGTTGTTACTTGAACACAGCCCG,"Exon (Ankrd52-201/Ankrd52, exon 22 of 28)",10,128377119,128394006,16888,1,Ankrd52-201,11773,Ankrd52-203;Ankrd52-201;Ankrd52-202,Ankrd52;Ankrd52;Ankrd52,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,12,237615,ENSMUSG00000014498,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15296,cg24732151,-0.00000172,0.00000426,-0.404564344,0.686076766,loss,ns,0.00000432,0.00000723,0.597465295,0.550632932,pos,ns,-0.001771447,0.002119217,-0.835896988,0.403856674,neg,ns,0.393772736,0.000093,0.0000729,1.276272891,0.202814401,pos,ns,0.92542528,Srsf7,Srsf7_threeUTR,17,80205025,80205074,80205073,80205074,50,-,TGATATCATAAGGCTCGTGACATTCTGAATCAAGGCGACTGACTCAAACG,3' UTR,17,80200080,80207305,7226,2,Srsf7-201,2231,Srsf7-201;Srsf7-202;Srsf7-203;Srsf7-205;Srsf7-206;Srsf7-207;Srsf7-208;Srsf7-204;Ttc39d-202,Srsf7;Srsf7;Srsf7;Srsf7;Srsf7;Srsf7;Srsf7;Srsf7;Ttc39d,0;0;0;0;0;0;0;0;-2386,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,7,8,225027,ENSMUSG00000024097,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11614,cg09699901,0.0000344,0.00000426,8.0654323,1.61E-14,gain,yes,-0.00000432,0.00000724,-0.597352747,0.55070796,neg,ns,0.00525959,0.002121034,2.479728928,0.013679291,pos,ns,1.863936417,-0.000130886,0.0000729,-1.794379539,0.073726854,neg,ns,0.107223798,Emx2,Emx2_Intergenic_downstream,19,59466109,59466158,59466109,59466110,50,+,CGTCCTGCGAGCTTTTGTGAAAGTGCAAATCAGTTTAAGCAATTATCATA,Distal Intergenic,19,59462802,59464215,1414,1,Emx2-203,3307,Emx2-201;Emx2-202;Emx2-203,Emx2;Emx2;Emx2,0;6590;3307,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,15,23,13797,ENSMUSG00000043969,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
5889,cg03399814,-0.0000143,0.00000761,-1.885023442,0.060361845,loss,ns,-0.00000772,0.0000129,-0.597062414,0.550901528,neg,ns,-0.010987221,0.003786781,-2.901466881,0.003980096,neg,ns,2.400106416,-0.0000543,0.000130227,-0.416870283,0.677061805,neg,ns,0.874327139,Prrc2a,Prrc2a_Exon,17,35161857,35161906,35161905,35161906,50,+,GTGAAGCCGGCAGTGGCTGCGATTCCGGCGGCTGAGCGGTTGAGGCATCG,"Exon (Prrc2a-201/Prrc2a, exon 4 of 31)",17,35149076,35164897,15822,2,Prrc2a-201,2991,Prrc2a-201;Prrc2a-206;Prrc2a-203,Prrc2a;Prrc2a;Prrc2a,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,13,53761,ENSMUSG00000024393,conserved gene and region,17,35161763,35161934,172,*,172,13,0.622093023,0.8263119,0.075581395,1.09E-08,CpGisland,TRUE,NA,NRS
4747,cg00038849,-0.00000714,0.00000422,-1.691880958,0.091673542,loss,ns,0.00000428,0.00000717,0.596985964,0.550952504,pos,ns,-0.00084511,0.002100116,-0.402411173,0.687658784,neg,ns,0.162627005,0.0000637,0.0000722,0.882403819,0.378242186,pos,ns,0.948685425,Mecom,Mecom_Intron,3,30416454,30416503,30416502,30416503,50,-,TCTTCTATCATTTGATGTCATGCAAGACCAGATAAATGACAAGTCTTTCG,"Intron (Mecom-212/Mecom, intron 1 of 15)",3,29951299,30509733,558435,2,Mecom-212,93230,Mecom-212;Mecom-213;Mecom-207;Mecom-208;Mecom-211;Mecom-209,Mecom;Mecom;Mecom;Mecom;Mecom;Mecom,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,80,14013,ENSMUSG00000027684,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17315,cg11551173,-0.0000218,0.00000928,-2.354865002,0.019152593,loss,ns,-0.00000941,0.0000158,-0.596954569,0.550973438,neg,ns,-0.002427613,0.004617695,-0.525719662,0.599458851,neg,ns,0.222240623,-0.000148776,0.000158802,-0.936866248,0.349556649,neg,ns,0.522573695,Ankfn1,Ankfn1_Intron,11,89662516,89662565,89662564,89662565,50,+,ATGGCCATGGCCAATCTCGTAGATTGGTACAAGTCCACATTTCCCAAACG,"Intron (Ankfn1-208/Ankfn1, intron 3 of 21)",11,89391238,89841266,450029,2,Ankfn1-208,178701,Ankfn1-208;Ankfn1-202;Ankfn1-205;Ankfn1-204,Ankfn1;Ankfn1;Ankfn1;Ankfn1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,15,382543,ENSMUSG00000047773,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4925,cg02579003,-0.000000924,0.0000016,-0.575589326,0.565310371,loss,ns,-0.00000163,0.00000273,-0.596799292,0.551076984,neg,ns,-0.000120579,0.00079861,-0.150985928,0.880085017,neg,ns,0.055475373,0.00000456,0.0000275,0.165991442,0.86827189,pos,ns,0.053969113,Stc2,Stc2_Promoter,11,31370109,31370158,31370157,31370158,50,+,TGGAAGCTCTGGTGTCACTTGAATGAAGGAGTCGAGCAGGTGTTGTCCCG,Promoter (<=1kb),11,31357307,31370074,12768,2,Stc2-201,-35,Stc2-201;Stc2-203;Stc2-204;Stc2-205;Stc2-202,Stc2;Stc2;Stc2;Stc2;Stc2,-35;-1006;-1943;-62;-1053,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,2,20856,ENSMUSG00000020303,conserved gene but different region,11,31370141,31370299,159,*,159,19,0.685534591,1.019230769,0.119496855,2.29E-16,CpGisland,TRUE,U3,Pr-B
3175,cg18323993,-0.0000242,0.00000676,-3.574244115,0.000407193,loss,ns,0.00000685,0.0000115,0.596623208,0.551194416,pos,ns,0.000188798,0.003363101,0.056138066,0.955267984,pos,ns,0.019874778,-0.000163955,0.000115657,-1.417599943,0.157311918,neg,ns,0.109584734,Klf9,Klf9_Promoter,19,23135911,23135960,23135911,23135912,50,-,CGGGTTCCTGGTCCCCCAATCTAGGGCAGTTTGTTCAACTGCAGTAAAGG,Promoter (5-6kb),19,23141226,23168134,26909,1,Klf9-201,-5315,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,13,16601,ENSMUSG00000033863,conserved gene and region,19,23135870,23135921,52,*,52,8,0.730769231,1.181818182,0.153846154,6.51E-08,CpGisland,TRUE,U6,En-Sp
12169,cg21330751,-0.00000579,0.0000039,-1.485968748,0.138303644,loss,ns,0.00000395,0.00000662,0.59647367,0.551294153,pos,ns,0.00144283,0.001939023,0.744101171,0.457378913,pos,ns,0.339723862,-0.0000231,0.0000667,-0.34592542,0.729633409,neg,ns,0.891495524,Map2k5,Map2k5_Intron,9,63198274,63198323,63198322,63198323,50,+,TGACTCCATTCTCATCTATTCTCATTTGCTATTAAAAATACCTTTCGGCG,"Intron (Map2k5-201/Map2k5, intron 19 of 21)",9,63163768,63377902,214135,2,Map2k5-201,179579,Map2k5-201,Map2k5,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,34,37,23938,ENSMUSG00000058444,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10718,cg24585760,-0.00000418,0.0000026,-1.611047959,0.108186942,loss,ns,-0.00000263,0.00000441,-0.596470323,0.551296386,neg,ns,0.0000476,0.001291835,0.03685432,0.970624883,pos,ns,0.012948579,-0.0000225,0.0000444,-0.506054443,0.613178105,neg,ns,0.9741733,Zfp462,Zfp462_Exon,4,55009409,55009458,55009457,55009458,50,+,CATAGAAAACATCCACTTATCTGGAAAGACAGCTGTCTACAAATGTGACG,"Exon (Zfp462-203/Zfp462, exon 3 of 13)",4,54947976,55083563,135588,1,Zfp462-203,61433,Zfp462-204;Zfp462-203;Zfp462-201;Zfp462-202,Zfp462;Zfp462;Zfp462;Zfp462,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,23,242466,ENSMUSG00000060206,conserved gene and region,4,55009389,55009625,237,*,237,14,0.459915612,1.117924528,0.05907173,5.98E-08,CpGisland,TRUE,NA,NRS
27450,cg13488629,-0.0000118,0.00000363,-3.267219226,0.001207928,loss,ns,-0.00000367,0.00000616,-0.596467991,0.551297941,neg,ns,0.0018184,0.00180433,1.007797725,0.314337554,pos,ns,0.502603731,-0.000110224,0.0000621,-1.77634639,0.076656572,neg,ns,0.942530621,Pbx1,Pbx1_Intron,1,168246943,168246992,168246943,168246944,50,+,CGCTAAGCAGTTAAATTAGAGAGTATTCAATTAATAACAGCTGAATATTC,"Intron (Pbx1-208/Pbx1, intron 2 of 7)",1,168119364,168432270,312907,2,Pbx1-208,185278,Pbx1-208;Pbx1-205;Pbx1-206;Pbx1-201;Pbx1-202;Pbx1-204,Pbx1;Pbx1;Pbx1;Pbx1;Pbx1;Pbx1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,84,18514,ENSMUSG00000052534,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10178,cg24362796,0.0000796,0.0000103,7.708864256,1.74E-13,gain,yes,-0.0000105,0.0000175,-0.596433294,0.551321085,neg,ns,0.017532339,0.00514052,3.410615687,0.000734038,pos,ns,3.134281553,-0.000372993,0.000176782,-2.109900262,0.035668085,neg,ns,0.114692169,Hoxa6,Hoxa6_fiveUTR,6,52208698,52208747,52208746,52208747,50,-,ACTGGTTTGTTTCTGGATGGCCGAACGCCAAAAGCGACAGCAGCAAATCG,Promoter (<=1kb),6,52206288,52208722,2435,2,Hoxa6-201,0,Gm28308-201;Hoxa3-201;Hoxa3-203;Hoxa5-201;Hoxa6-201,Gm28308;Hoxa3;Hoxa3;Hoxa5;Hoxa6,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,4,15403,ENSMUSG00000043219,mapped to different genes,6,52208695,52208947,253,*,253,29,0.691699605,0.989347357,0.114624506,3.13E-24,CpGisland,TRUE,U3,Pr-B
10441,cg08071168,0.00000745,0.00000921,0.808789571,0.41925647,gain,ns,-0.00000933,0.0000156,-0.596309585,0.551403604,neg,ns,0.014276215,0.004582903,3.115102888,0.002010719,pos,ns,2.696648558,-0.000748296,0.000157606,-4.747897447,0.00000315,neg,ns,0.279284849,Prdm6,Prdm6_Intron,18,53552744,53552793,53552744,53552745,50,-,CGTGGGTATGAACTTAATTAAGTACTAAGAGGTAATGAATTGGAATTTTT,"Intron (Prdm6-201/Prdm6, intron 5 of 6)",18,53464516,53575857,111342,1,Prdm6-201,88228,Prdm6-201;Prdm6-203;Prdm6-204;Prdm6-202,Prdm6;Prdm6;Prdm6;Prdm6,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,16,225518,ENSMUSG00000069378,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6758,cg23695615,0.0000212,0.00000264,8.048704789,1.80E-14,gain,yes,-0.00000267,0.00000449,-0.596261056,0.551435977,neg,ns,0.001681681,0.001313969,1.27984764,0.201555681,pos,ns,0.695604956,0.0000268,0.0000452,0.592646587,0.553849748,pos,ns,0.066231453,Lhx2,Lhx2_Intron,2,38347986,38348035,38348034,38348035,50,-,ACTAATTACACCTTGTCAATCACCGGCTATGAAGACATAAAACCAGCGCG,"Intron (Lhx2-203/Lhx2, intron 1 of 4)",2,38339281,38369199,29919,1,Lhx2-203,8705,Lhx2-203;Lhx2-204;Lhx2-202;Lhx2-201;Lhx2-207;Lhx2-205,Lhx2;Lhx2;Lhx2;Lhx2;Lhx2;Lhx2,0;0;0;0;-3733;-4497,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,33,16870,ENSMUSG00000000247,mapped to different genes,2,38347822,38348178,357,*,357,27,0.518207283,1.126841244,0.075630252,1.55E-17,CpGisland,TRUE,U3,Pr-B
10046,cg23242885,0.00000651,0.00000217,3.006987622,0.002854381,gain,ns,0.00000219,0.00000368,0.596250887,0.551442761,pos,ns,0.000965894,0.001078303,0.895753684,0.371079348,pos,ns,0.430533215,-0.00000705,0.0000371,-0.190083691,0.849367959,neg,ns,0.054143817,Maml3,Maml3_Exon,3,52104065,52104114,52104113,52104114,50,-,CGAGGCTGCTGTTCAGGCTACTGTTGATGCAAATACTACTGCCATTCGCG,Promoter (<=1kb),3,51685907,52105076,419170,2,Maml3-202,962,Maml3-202,Maml3,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,32,433586,ENSMUSG00000061143,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
19965,cg26301779,-0.00000731,0.0000114,-0.64099641,0.521998595,loss,ns,0.0000115,0.0000194,0.596211179,0.551469249,pos,ns,-0.005897396,0.005674452,-1.039289028,0.29948025,neg,ns,0.523631813,0.000246307,0.000195144,1.262181881,0.207832089,pos,ns,0.515563056,Etv4,Etv4_Intergenic_upstream,11,101801627,101801676,101801675,101801676,50,+,AAAAGACTCTCCTCTTAGGTATTCCTGCCAACTCCGTTTTATAATCTCCG,Distal Intergenic,11,101769747,101785371,15625,2,Etv4-202,-16256,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,5,18612,ENSMUSG00000017724,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6980,cg09191599,-0.00000975,0.000011,-0.886159409,0.376218535,loss,ns,0.0000111,0.0000187,0.596169036,0.551497364,pos,ns,0.005207814,0.005478247,0.9506352,0.342530147,pos,ns,0.465301199,-0.000376796,0.000188396,-2.000017844,0.046370467,neg,ns,0.749644923,Sorbs1,Sorbs1_Exon,19,40326931,40326980,40326931,40326932,50,+,CGATCCACTGGTAAGCATGCAGAATAAAATAAATAGACCCATTAGGTTAA,"Exon (Sorbs1-211/Sorbs1, exon 18 of 27)",19,40294753,40376874,82122,2,Sorbs1-227,49894,Sorbs1-227;Sorbs1-225;Sorbs1-208;Sorbs1-212;Sorbs1-211;Sorbs1-213;Sorbs1-226;Sorbs1-221;Sorbs1-201;Sorbs1-202;Sorbs1-203;Sorbs1-204;Sorbs1-206,Sorbs1;Sorbs1;Sorbs1;Sorbs1;Sorbs1;Sorbs1;Sorbs1;Sorbs1;Sorbs1;Sorbs1;Sorbs1;Sorbs1;Sorbs1,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,7,20411,ENSMUSG00000025006,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20589,cg06093379,0.0000233,0.00000432,5.396815524,0.000000135,gain,yes,-0.00000437,0.00000733,-0.596149623,0.551510315,neg,ns,-0.001839351,0.002148653,-0.856048549,0.392632119,neg,ns,0.406014176,0.000273999,0.0000739,3.70809874,0.000247344,pos,ns,0.116540458,Wnt3,Wnt3_fiveUTR,11,103774151,103774200,103774151,103774152,50,+,CGCTTCTGACAAGCCCGAAAGTCATTTCCAATCTCAAGTGGACTTTGTTC,Promoter (<=1kb),11,103774150,103817957,43808,1,Wnt3-201,1,Wnt3-201,Wnt3,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,9,22415,ENSMUSG00000000125,conserved gene and region,11,103774063,103774167,105,*,105,12,0.733333333,0.861833105,0.114285714,3.54E-10,CpGisland,TRUE,U3,Pr-B
17855,cg05278305,-0.00001,0.00000391,-2.558829906,0.010977242,loss,ns,-0.00000396,0.00000664,-0.596143041,0.551514706,neg,ns,-0.000795261,0.001945611,-0.408746276,0.68300809,neg,ns,0.165574152,-0.00000162,0.0000669,-0.024218417,0.980693969,neg,ns,0.837441971,Nr2c2,Nr2c2_Exon,6,92154337,92154386,92154337,92154338,50,-,CGTCACTATGGGGCTGTCAGTTGTGAAGGTTGCAAAGGTTTCTTCAAAAG,"Exon (Nr2c2-201/Nr2c2, exon 6 of 15)",6,92091390,92173057,81668,1,Nr2c2-201,62947,Nr2c2-201;Nr2c2-202;Nr2c2-205;Nr2c2-204;Nr2c2-207,Nr2c2;Nr2c2;Nr2c2;Nr2c2;Nr2c2,0;0;0;0;-2595,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,22026,ENSMUSG00000005893,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6068,cg03677257,0.0000862,0.000011,7.865671083,6.16E-14,gain,yes,0.0000111,0.0000186,0.596053966,0.551574133,pos,ns,0.01036004,0.005455289,1.899081628,0.058481957,pos,ns,1.232978102,-0.000182595,0.000187607,-0.973286266,0.331169876,neg,ns,0.288709942,Psd2,Psd2_Intergenic_upstream,18,35933640,35933689,35933688,35933689,50,+,CTGCAGTGGCTGGAGGTGACCTTCTGGAGACGGCGATTAATCACGGGCCG,Distal Intergenic,18,35964830,36014712,49883,1,Psd2-201,-31141,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,24,29,74002,ENSMUSG00000024347,mapped to different genes,18,35933670,35933711,42,*,42,10,0.761904762,1.647058824,0.238095238,3.06E-12,CpGisland,TRUE,U13,Hc-P
12541,cg25322867,-0.000000561,0.00000189,-0.295897748,0.767506283,loss,ns,-0.00000192,0.00000322,-0.596037626,0.551585034,neg,ns,0.000188942,0.000942832,0.200398566,0.841300286,pos,ns,0.075048964,-0.00000266,0.0000324,-0.081970676,0.934722932,neg,ns,0.945711851,Prpf39,Prpf39_fiveUTR,12,65043783,65043832,65043783,65043784,50,-,CGGTCAGAATGCAGGGACTGCTGCGCTTTGAAGATCAAGACTCTGCACGT,5' UTR,12,65036333,65063386,27054,1,Prpf39-201,7450,Prpf39-201;Prpf39-205;Prpf39-202;Prpf39-207;Prpf39-210;Prpf39-209;Prpf39-203;Prpf39-208;Prpf39-206,Prpf39;Prpf39;Prpf39;Prpf39;Prpf39;Prpf39;Prpf39;Prpf39;Prpf39,0;0;0;0;0;0;0;-160;-4484,TRUE,FALSE,FALSE,TRUE,TRUE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,7,328110,ENSMUSG00000035597,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24070,cg26259758,0.000005,0.000002,2.498026154,0.013006545,gain,ns,0.00000203,0.0000034,0.596022796,0.551594929,pos,ns,0.002377658,0.000996982,2.384854919,0.017686691,pos,ns,1.752353411,-0.0000504,0.0000343,-1.470397272,0.142468421,neg,ns,0.056491921,Zic5,Zic5_Intron,14,122450790,122450839,122450838,122450839,50,+,GCTCACTAAGTAATTGATTTAATGAAGTTCCTATGAAACTATTAAACCCG,"Intron (Gm5089-201/Gm5089-201, intron 1 of 2)",14,122459193,122460021,829,2,Zic5-202,9182,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,26,65100,ENSMUSG00000041703,mapped to different genes,14,122450815,122451209,395,*,395,35,0.675949367,0.802752294,0.088607595,5.51E-25,CpGisland,TRUE,U3,Pr-B
6446,cg12452211,-0.0000152,0.00000678,-2.237223896,0.025982197,loss,ns,0.00000687,0.0000115,0.596022294,0.551595263,pos,ns,-0.005349203,0.003375692,-1.584623973,0.114071352,neg,ns,0.942823412,0.0000578,0.00011609,0.49826381,0.618651424,pos,ns,0.574771038,Zfp536,Zfp536_Intergenic_downstream,7,37290874,37290923,37290922,37290923,50,-,TCTGTCTCGTCAATCTCATTATTGCAGAATCCATCAAACTCTCTTCCACG,Distal Intergenic,7,37472135,37479986,7852,2,Zfp536-204,189112,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,112,243937,ENSMUSG00000043456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14406,cg01957447,-0.0000442,0.0000126,-3.506593474,0.000520926,loss,ns,0.0000128,0.0000214,0.595900835,0.551676302,pos,ns,-0.001247949,0.006272779,-0.198946767,0.842434804,neg,ns,0.074463699,-0.000131727,0.00021572,-0.61063879,0.541886165,neg,ns,0.208688145,Tlcd2,Tlcd2_Intron,11,75463089,75463138,75463089,75463090,50,-,CGTTGGAACTGTGGGGGCGGGGCTTGGAACTTGGAACAAAGTTCAGACAT,"Intron (Mir22hg-202/Mir22hg-202, intron 1 of 2)",11,75461715,75469663,7949,1,Tlcd2-203,1374,Tlcd2-203;Tlcd2-201;Tlcd2-202,Tlcd2;Tlcd2;Tlcd2,0;-4941;-4941,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,6,380712,ENSMUSG00000038217,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17213,cg20462566,0.00000926,0.00000487,1.901444614,0.058170822,gain,ns,-0.00000493,0.00000828,-0.595791018,0.551749578,neg,ns,-0.001708159,0.00242487,-0.704433168,0.481691908,neg,ns,0.317230649,-0.0000707,0.0000834,-0.84820721,0.396977029,neg,ns,0.863214825,Mtx1,Mtx1_Exon,3,89216833,89216882,89216833,89216834,50,-,CGCCAAGACAACACTCGATGGCTGGAGGCCTCTGTTGTAGGCAAGATCAA,"Exon (Thbs3-201/Thbs3, exon 2 of 23)",3,89209356,89227052,17697,2,Mtx1-216,10170,Mtx1-219;Mtx1-201;Mtx1-202;Mtx1-203;Mtx1-214;Mtx1-215;Mtx1-216;Mtx1-210;Mtx1-212;Mtx1-211;Mtx1-209;Mtx1-208;Thbs3-201;Thbs3-207;Thbs3-203;Thbs3-202;Thbs3-209;Thbs3-205,Mtx1;Mtx1;Mtx1;Mtx1;Mtx1;Mtx1;Mtx1;Mtx1;Mtx1;Mtx1;Mtx1;Mtx1;Thbs3;Thbs3;Thbs3;Thbs3;Thbs3;Thbs3,-2498;-2403;-2476;-2926;-2993;-2921;0;-2971;-2948;-2956;-3444;-3007;0;0;0;0;-538;-4270,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,17827,ENSMUSG00000064068,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16991,cg10954464,-0.00000071,0.00000105,-0.679068415,0.497601187,loss,ns,-0.00000106,0.00000178,-0.595747138,0.551778858,neg,ns,-0.001163761,0.000520708,-2.23495936,0.026132165,neg,ns,1.582824611,0.0000125,0.0000179,0.697170189,0.486218786,pos,ns,0.964627495,Atg16l1,Atg16l1_Exon,1,87774824,87774873,87774824,87774825,50,+,CGCAGCCTGCTGGAGGCCTTCTGGATTCTATCACTAATATCTTTGGGTAG,"Exon (Atg16l1-201/Atg16l1, exon 8 of 18)",1,87756013,87792428,36416,1,Atg16l1-201,18811,Atg16l1-210;Atg16l1-201;Atg16l1-208;Atg16l1-202;Atg16l1-203;Atg16l1-211;Atg16l1-205;Atg16l1-209;Atg16l1-204,Atg16l1;Atg16l1;Atg16l1;Atg16l1;Atg16l1;Atg16l1;Atg16l1;Atg16l1;Atg16l1,18954;0;0;0;0;0;0;-692;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,77040,ENSMUSG00000026289,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27765,cg22723228,0.00000257,0.00000234,1.099285688,0.272496447,gain,ns,-0.00000237,0.00000397,-0.595731862,0.551789052,neg,ns,-0.0000553,0.001164403,-0.047520445,0.962129035,neg,ns,0.016766679,0.0000298,0.00004,0.743820351,0.457548563,pos,ns,0.961529291,Mark1,Mark1_Exon,1,184898543,184898592,184898591,184898592,50,-,GCTATTTTTGATGCAATGTTCTTAAAGGCAATAGATGTCCCAGATATTCG,"Exon (Mark1-201/Mark1, exon 18 of 18)",1,184896789,184999570,102782,2,Mark1-201,100978,Mark1-201,Mark1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,226778,ENSMUSG00000026620,conserved gene and region,1,184898591,184898686,96,*,96,9,0.625,0.964285714,0.09375,0.000000648,CpGisland,TRUE,U11,Tr-P
7731,cg24981538,0.0000168,0.0000134,1.256574409,0.209853825,gain,ns,0.0000135,0.0000227,0.595705313,0.551806768,pos,ns,0.009553301,0.006661502,1.434106283,0.152549858,pos,ns,0.816588192,-0.000473137,0.000229088,-2.065302842,0.039725339,neg,ns,0.739308232,Arhgap15,Arhgap15_Intron,2,43988110,43988159,43988110,43988111,50,+,CGTCAAAACATGACCTTTAATGGTTGCTTGGAGAGAAGTTAGCGTGGAAT,"Intron (Arhgap15-203/Arhgap15, intron 6 of 14)",2,43748824,44395953,647130,1,Arhgap15-203,239286,Arhgap15-203;Arhgap15-202;Arhgap15-201,Arhgap15;Arhgap15;Arhgap15,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,72,78,76117,ENSMUSG00000049744,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10876,cg26524453,0.0000761,0.0000147,5.182266027,0.000000396,gain,yes,-0.0000149,0.0000249,-0.595690548,0.551816621,neg,ns,0.025830309,0.007306624,3.535190797,0.00046963,pos,ns,3.32824384,-0.000712495,0.000251274,-2.835527445,0.004875761,neg,ns,0.353199787,Rabggta,Rabggta_fiveUTR,14,55721169,55721218,55721169,55721170,50,-,CGGCAGTTCCAGAGGGTGGCAAAATCAGGGTTGGCTCCCAGAATCTGGCT,Promoter (<=1kb),14,55715416,55722202,6787,2,Rabggta-205,984,Rabggta-205;Rabggta-201;Rabggta-203;Rabggta-208;Rabggta-209;Rabggta-210;Rabggta-202;Rabggta-204;Rabggta-207;Rabggta-206,Rabggta;Rabggta;Rabggta;Rabggta;Rabggta;Rabggta;Rabggta;Rabggta;Rabggta;Rabggta,0;0;0;0;0;0;0;-2023;-1036;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,1,56187,ENSMUSG00000040472,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21320,cg21490132,0.000000541,0.00000276,0.19572129,0.844956548,gain,ns,-0.00000279,0.00000469,-0.595595464,0.551880074,neg,ns,-0.003908255,0.001374769,-2.842844656,0.004768035,neg,ns,2.321660542,0.000129429,0.0000473,2.737602996,0.006546357,pos,ns,0.915941752,Nfat5,Nfat5_threeUTR,8,107338894,107338943,107338942,107338943,50,+,CTCAGTCACCGACAGCAAGGCTATGCAAGTGGAGAGCTGCTCCTCAGCCG,Promoter (<=1kb),8,107338913,107370659,31747,1,Nfat5-207,0,Nfat5-213;Nfat5-214;Nfat5-206;Nfat5-211;Nfat5-203;Nfat5-201;Nfat5-209;Nfat5-205;Nfat5-202;Nfat5-207,Nfat5;Nfat5;Nfat5;Nfat5;Nfat5;Nfat5;Nfat5;Nfat5;Nfat5;Nfat5,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,13,17,54446,ENSMUSG00000003847,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20058,cg22935821,-0.00000191,0.000000913,-2.095020537,0.0369804,loss,ns,0.000000924,0.00000155,0.595406462,0.552006212,pos,ns,0.000424218,0.000454618,0.933130858,0.351478618,pos,ns,0.45410109,-0.000008,0.0000156,-0.511702455,0.609223571,neg,ns,0.026676228,Sp7,Sp7_Promoter,15,102376928,102376977,102376976,102376977,50,-,GCAGGAGGCAGCTGCATATCTGCGGTCCCGACCACAATTGCTGGGAGTCG,Promoter (9-10kb),15,102366902,102367182,281,2,Sp7-203,-9795,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,5,10,170574,ENSMUSG00000060284,conserved gene and region,15,102376804,102377083,280,*,280,32,0.757142857,0.816029144,0.114285714,1.19E-26,CpGisland,TRUE,NA,NRS
6413,cg22956116,0.0000221,0.00000366,6.02879476,4.69E-09,gain,yes,-0.0000037,0.00000622,-0.59534878,0.552044711,neg,ns,0.003304256,0.001822648,1.812888158,0.070816198,pos,ns,1.149867395,-0.000120171,0.0000627,-1.91718609,0.056133218,neg,ns,0.09840185,Pknox2,Pknox2_fiveUTR,9,37147221,37147270,37147269,37147270,50,-,GGAAATGAATGACAGCTTACCTGATGCCAATCTTCATCAGACTGACACCG,Promoter (<=1kb),9,36987178,37147266,160089,2,Pknox2-211,0,Pknox2-201;Pknox2-202;Pknox2-209;Pknox2-212;Pknox2-211;Pknox2-213;Pknox2-214,Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2,0;0;0;0;0;0;-1406,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,47,208076,ENSMUSG00000035934,conserved gene and region,9,37147269,37147367,99,*,99,11,0.737373737,0.926020408,0.111111111,3.31E-09,CpGisland,TRUE,U3,Pr-B
21319,cg10962665,0.00000192,0.00000213,0.900550459,0.368526444,gain,ns,-0.00000216,0.00000362,-0.595339528,0.552050886,neg,ns,0.000338828,0.00106172,0.319131321,0.749841866,pos,ns,0.125030315,0.00000528,0.0000365,0.144484937,0.885211436,pos,ns,0.951576095,Nfat5,Nfat5_threeUTR,8,107338903,107338952,107338903,107338904,50,-,CGACAGCAAGGCTATGCAAGTGGAGAGCTGCTCCTCAGCCGTGGGGGTAA,Promoter (<=1kb),8,107338913,107370659,31747,1,Nfat5-207,0,Nfat5-213;Nfat5-214;Nfat5-206;Nfat5-211;Nfat5-203;Nfat5-201;Nfat5-209;Nfat5-205;Nfat5-202;Nfat5-207,Nfat5;Nfat5;Nfat5;Nfat5;Nfat5;Nfat5;Nfat5;Nfat5;Nfat5;Nfat5,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,13,17,54446,ENSMUSG00000003847,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9953,cg24952195,-0.00000122,0.00000886,-0.137226006,0.890941238,loss,ns,-0.00000896,0.0000151,-0.595334023,0.552054561,neg,ns,0.002158662,0.00440971,0.489524699,0.624816479,pos,ns,0.204247525,-0.000486913,0.00015165,-3.210775762,0.001462657,neg,ns,0.757233012,Satb1,Satb1_Intron,17,51746877,51746926,51746925,51746926,50,+,TTAATTTGACACCTTCTGTTCTAAACCCTTTGTTTCTATTCAAAATCACG,"Intron (Satb1-208/Satb1, intron 9 of 10)",17,51736187,51832672,96486,2,Satb1-208,85746,Satb1-208;Satb1-213;Satb1-204;Satb1-214;Satb1-203;Satb1-211;Satb1-207;Satb1-205,Satb1;Satb1;Satb1;Satb1;Satb1;Satb1;Satb1;Satb1,0;0;0;0;0;0;0;-4611,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,28,36,20230,ENSMUSG00000023927,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10019,cg00847015,-0.0000247,0.0000046,-5.378585539,0.000000148,loss,yes,-0.00000465,0.00000781,-0.595270085,0.552097238,neg,ns,-0.00362191,0.002287959,-1.583030753,0.114434089,neg,ns,0.941444584,-0.000147829,0.0000787,-1.878797569,0.06121032,neg,ns,0.914729851,Skap2,Skap2_Intron,6,51863258,51863307,51863306,51863307,50,+,GAAACCATTCTAGTCAATTTATAAGAAATATTGCATCCCTTTGTAGGACG,"Intron (Skap2-205/Skap2, intron 11 of 12)",6,51857422,52012549,155128,2,Skap2-205,149242,Skap2-205;Skap2-207;Skap2-201;Skap2-203,Skap2;Skap2;Skap2;Skap2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,19,54353,ENSMUSG00000059182,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8153,cg10382585,-0.00001,0.00000682,-1.465909457,0.143686527,loss,ns,0.0000069,0.0000116,0.595102373,0.552209188,pos,ns,0.005170351,0.003394789,1.523025953,0.128771635,pos,ns,0.890179789,-0.000265064,0.000116747,-2.270419502,0.023868148,neg,ns,0.690290837,Ebf1,Ebf1_Intron,11,44800912,44800961,44800960,44800961,50,-,GCAAGGGGCCTAATAGTCAGCCTTGTAACATCAACTGGTTACCCCCCTCG,"Intron (Ebf1-203/Ebf1, intron 6 of 15)",11,44617317,45004995,387679,1,Ebf1-203,183595,Ebf1-203;Ebf1-202;Ebf1-201,Ebf1;Ebf1;Ebf1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,80,13591,ENSMUSG00000057098,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9179,cg20440921,-0.000011,0.00000674,-1.631190047,0.103865689,loss,ns,0.00000682,0.0000115,0.595025461,0.552260532,pos,ns,-0.004250344,0.00335667,-1.266238376,0.206378421,neg,ns,0.685335715,0.0000418,0.000115436,0.361787116,0.717757597,pos,ns,0.740798089,Gm14610,Gm14610_Promoter,X,47388758,47388807,47388758,47388759,50,+,CGGGCAGGAGGACCCTTAGAGTGAAGAAAGCCGTTAGCAAATCAATCCTA,Promoter (<=1kb),20,47387020,47387985,966,2,Gm14610-201,-773,Gm14610-201,Gm14610,-773,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,1,100415992,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9773,cg07792339,0.00000222,0.0000102,0.2165975,0.828664501,gain,ns,0.0000104,0.0000174,0.595009825,0.55227097,pos,ns,0.000504426,0.005098354,0.098938929,0.921250705,pos,ns,0.035622167,-0.0000207,0.000175332,-0.118091841,0.906071368,neg,ns,0.483767094,Nell1,Nell1_Exon,7,50826307,50826356,50826307,50826308,50,-,CGCTGCGTTAACCTGCCAGGGTGGTACCACTGTGAGTGCAGAAGCGGTTT,"Exon (Nell1-201/Nell1, exon 16 of 20)",7,49974864,50866608,891745,1,Nell1-201,851443,Nell1-201;Nell1-202,Nell1;Nell1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,6,338352,ENSMUSG00000055409,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3687,cg02708246,0.0000136,0.00000394,3.44095042,0.000659178,gain,ns,-0.00000398,0.00000669,-0.594770886,0.552430494,neg,ns,0.005120405,0.001960143,2.612260832,0.009432608,pos,ns,2.025368223,-0.0000708,0.0000674,-1.050582789,0.294268536,neg,ns,0.903820639,Kidins220,Kidins220_Exon,12,25040538,25040587,25040538,25040539,50,-,CGAGTTTGCCCAGAGATCAGAACAATGGCCTAGTAAGTATATAAAAGGGT,"Exon (Kidins220-201/Kidins220, exon 25 of 32)",12,24974925,25059697,84773,1,Kidins220-201,65613,Kidins220-201;Kidins220-202;Kidins220-210;Kidins220-208;Kidins220-206;Kidins220-203,Kidins220;Kidins220;Kidins220;Kidins220;Kidins220;Kidins220,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,77480,ENSMUSG00000036333,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13410,cg21957832,0.0000838,0.00000702,11.9352027,2.83E-27,gain,yes,-0.00000709,0.0000119,-0.594711826,0.552469928,neg,ns,0.014216203,0.003493456,4.069380439,0.0000599,pos,ns,4.222803109,-0.000284456,0.00012014,-2.367713195,0.01851199,neg,ns,0.099280655,Nr2f2,Nr2f2_Promoter,7,70370011,70370060,70370011,70370012,50,-,CGGGCTGGAGTGTTTTAAGATGTGTCTTCAACAGGATGAAAAGAGTTAGG,Promoter (3-4kb),7,70354439,70366735,12297,2,Nr2f2-202,-3325,Nr2f2-202,Nr2f2,0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,1,69,11819,ENSMUSG00000030551,mapped to different genes,7,70370011,70370235,225,*,225,16,0.604444444,0.830449827,0.071111111,3.42E-10,CpGisland,TRUE,U3,Pr-B
23506,cg19606485,0.000000368,0.00000259,0.142113696,0.887082515,gain,ns,-0.00000262,0.0000044,-0.594669754,0.55249802,neg,ns,0.000439965,0.001289883,0.34108875,0.733267831,pos,ns,0.134737367,-0.0000271,0.0000444,-0.610050864,0.542275038,neg,ns,0.950360134,Med13l,Med13l_Exon,5,118728457,118728506,118728457,118728458,50,+,CGTGCCTTCCAGAAATACAAGCAAGCAAATGAATCTGAATCCTATGGATT,"Exon (Med13l-201/Med13l, exon 10 of 31)",5,118560719,118765438,204720,1,Med13l-201,167738,Med13l-201;Med13l-202,Med13l;Med13l,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,16,76199,ENSMUSG00000018076,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16290,cg22067905,-0.00000301,0.00000129,-2.334607112,0.020202214,loss,ns,0.0000013,0.00000219,0.594623866,0.552528661,pos,ns,0.001064641,0.000641856,1.658692279,0.098189204,pos,ns,1.007936261,-0.0000226,0.0000221,-1.025833136,0.305770033,neg,ns,0.95482245,Lrpprc,Lrpprc_Intron,17,84716518,84716567,84716566,84716567,50,+,AAGCAGGTAATTTGCTAAATGGACTCCTTTATCCAAGTATTCGAAGGGCG,"Intron (Lrpprc-201/Lrpprc, intron 31 of 37)",17,84705247,84790558,85312,2,Lrpprc-201,73991,Lrpprc-201;Lrpprc-207,Lrpprc;Lrpprc,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,15,72416,ENSMUSG00000024120,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22995,cg10198934,-0.0000147,0.00000321,-4.585717991,0.00000657,loss,ns,-0.00000324,0.00000546,-0.594477188,0.552626608,neg,ns,0.000896439,0.001598998,0.560625709,0.575457676,pos,ns,0.239986612,-0.000136264,0.000055,-2.477996052,0.013744578,neg,ns,0.922830595,Rhbdf2,Rhbdf2_Exon,11,116601885,116601934,116601933,116601934,50,+,TCACCGAGCTGGGGCCAACCCAGAAGTTCTCCTGCTGGATGTACTTCACG,"Exon (Rhbdf2-202/Rhbdf2, exon 11 of 19)",11,116598165,116624200,26036,2,Rhbdf2-202,22266,Aanat-204;Aanat-201;Aanat-205;Aanat-202;Rhbdf2-202;Rhbdf2-201;Rhbdf2-204;Rhbdf2-203,Aanat;Aanat;Aanat;Aanat;Rhbdf2;Rhbdf2;Rhbdf2;Rhbdf2,15453;8198;8198;6309;0;0;0;22313,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,217344,ENSMUSG00000020806,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2434,cg01902937,0.000000994,0.00000775,0.128353809,0.897952212,gain,ns,0.00000782,0.0000132,0.59414744,0.552846835,pos,ns,0.000631985,0.003856057,0.163893998,0.869921394,pos,ns,0.060519988,0.0000496,0.000132609,0.374264654,0.708463295,pos,ns,0.163185263,Ptf1a,Ptf1a_Intergenic_downstream,2,19450975,19451024,19450975,19450976,50,-,CGTGGAAGCCACAGACAATCGAAATGATATCTTTATTGCTAGGTTCATGT,Distal Intergenic,2,19445663,19447501,1839,1,Ptf1a-201,5361,Ptf1a-201,Ptf1a,5312,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,14,21,19213,ENSMUSG00000026735,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
23021,cg21846387,0.00000268,0.00000168,1.597511228,0.111170579,gain,ns,0.00000169,0.00000285,0.59394802,0.552980042,pos,ns,0.002071018,0.000833695,2.484143842,0.013514198,pos,ns,1.869209731,-0.0000654,0.0000287,-2.279639308,0.023308262,neg,ns,0.950977304,Rab3ip,Rab3ip_Exon,10,116910140,116910189,116910140,116910141,50,+,CGAGTCCCTGCTGAATGTATCGAATGTATGTAAAAAAGTTACATACAGAA,"Exon (Rab3ip-201/Rab3ip, exon 9 of 10)",10,116905784,116950380,44597,2,Rab3ip-201,40191,Rab3ip-201;Rab3ip-203,Rab3ip;Rab3ip,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,216363,ENSMUSG00000064181,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20024,cg00906983,-0.0000105,0.00000292,-3.576995858,0.000403102,loss,ns,0.00000295,0.00000496,0.593939276,0.552985883,pos,ns,-0.001060051,0.001454208,-0.728954456,0.466579872,neg,ns,0.331074,0.0000686,0.00005,1.371822416,0.171110694,pos,ns,0.943383205,Pgap2,Pgap2_threeUTR,7,102236510,102236559,102236558,102236559,50,+,TGCATTCTCTGGCGGTTGACCAAGAAGCACACAGTAAGTCAGGAGGTACG,3' UTR,7,102210362,102238567,28206,1,Pgap2-204,26148,Pgap2-204;Pgap2-207;Pgap2-216;Pgap2-224;Pgap2-225;Pgap2-211;Pgap2-208;Pgap2-206;Pgap2-201;Pgap2-209;Pgap2-217;Pgap2-218;Pgap2-202;Pgap2-223;Pgap2-212;Pgap2-215;Pgap2-213;Pgap2-203;Pgap2-210;Rhog-202;Rhog-201;Rhog-203,Pgap2;Pgap2;Pgap2;Pgap2;Pgap2;Pgap2;Pgap2;Pgap2;Pgap2;Pgap2;Pgap2;Pgap2;Pgap2;Pgap2;Pgap2;Pgap2;Pgap2;Pgap2;Pgap2;Rhog;Rhog;Rhog,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;13529;13564;19495,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,4,233575,ENSMUSG00000030990,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20488,cg26945573,0.000018,0.00000338,5.33263974,0.000000187,gain,yes,-0.00000341,0.00000575,-0.593887827,0.553020252,neg,ns,0.004096143,0.001684482,2.431692533,0.015594629,pos,ns,1.807024956,-0.000130911,0.0000579,-2.259845768,0.024524651,neg,ns,0.026525138,Hoxc4,Hoxc4_Intergenic_downstream,15,103086557,103086606,103086557,103086558,50,+,CGATCGTAAAGGGCTTTAATATTGAAATATGGGTCATTTTCCCAGCTCCA,Distal Intergenic,15,103034395,103036852,2458,1,Hoxc4-201,52162,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,32,91,15423,ENSMUSG00000075394,mapped to different genes,15,103086384,103086562,179,*,179,16,0.625698324,0.932291667,0.089385475,9.87E-12,CpGisland,TRUE,U13,Hc-P
27361,cg21988336,-0.00000689,0.0000076,-0.906857959,0.365186272,loss,ns,0.00000767,0.0000129,0.59385334,0.553043291,pos,ns,0.002804462,0.003783811,0.741173832,0.459149121,pos,ns,0.338046243,-0.000182501,0.000130125,-1.402505798,0.161764891,neg,ns,0.222882962,Slc35c2,Slc35c2_Intergenic_downstream,2,165271501,165271550,165271501,165271502,50,+,CGTTGAGTAATTAACTATTAATAAAAGCATTACTGAGTTAACCATGGGGG,Distal Intergenic,2,165276554,165277841,1288,2,Slc35c2-205,6291,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,228875,ENSMUSG00000017664,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15771,cg04574922,-0.0000343,0.00000711,-4.828653612,0.00000216,loss,ns,-0.00000717,0.0000121,-0.593851116,0.553044777,neg,ns,-0.002929431,0.003538643,-0.827840443,0.408397705,neg,ns,0.388916707,-0.000115086,0.000121694,-0.945703238,0.345036501,neg,ns,0.930758352,Dpf3,Dpf3_Exon,12,83269535,83269584,83269583,83269584,50,+,TGTCACTTTCTGACGTGGAACCGAATAAGTCCTCCGTGGTACGTGCTGCG,"Exon (Dpf3-203/Dpf3, exon 7 of 7)",12,83213745,83350895,137151,2,Dpf3-204,81311,Dpf3-204;Dpf3-207;Dpf3-202;Dpf3-203;Dpf3-201;Dpf3-206;Dpf3-205,Dpf3;Dpf3;Dpf3;Dpf3;Dpf3;Dpf3;Dpf3,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,16,70127,ENSMUSG00000021221,conserved gene and region,12,83269462,83269588,127,*,127,13,0.582677165,1.205989774,0.102362205,2.30E-10,CpGisland,TRUE,U11,Tr-P
18088,cg15577298,0.0000155,0.00000445,3.479691674,0.00057393,gain,ns,-0.00000449,0.00000757,-0.593615012,0.553202516,neg,ns,0.002041917,0.002216924,0.921058738,0.357735975,pos,ns,0.446437384,0.00000276,0.0000762,0.036198956,0.971147016,pos,ns,0.884884408,Magi1,Magi1_threeUTR,6,93708006,93708055,93708006,93708007,50,+,CGGTTTTCATACATGCTCCTGGACTGGGCCCAGATTTTAAAAGGATCTGG,3' UTR,6,93675455,94283322,607868,2,Magi1-201,575267,Magi1-201;Magi1-202;Magi1-208;Magi1-203;Magi1-206;Magi1-209;Magi1-205,Magi1;Magi1;Magi1;Magi1;Magi1;Magi1;Magi1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,18,14924,ENSMUSG00000045095,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19660,cg05798330,0.00000544,0.00000623,0.872350052,0.383692594,gain,ns,0.00000629,0.0000106,0.593581961,0.553224599,pos,ns,-0.005671587,0.003102603,-1.828009318,0.068509124,neg,ns,1.164251586,0.000152685,0.000106698,1.430998851,0.153437824,pos,ns,0.826000231,Gm28267,Gm28267_Intergenic_upstream,9,100325381,100325430,100325429,100325430,50,-,TTTCCATGATGAATTGCCCGAAGCCCCTGAATCACAAACCATTTTTTCCG,Distal Intergenic,9,100404495,100404759,265,1,Gm28267-201,-79114,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,29,29,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16523,cg01918593,-0.0000263,0.00000701,-3.751573536,0.000209705,loss,ns,-0.00000707,0.0000119,-0.593571154,0.55323182,neg,ns,-0.002468334,0.003490048,-0.707249261,0.479942909,neg,ns,0.31881042,-0.0000819,0.000120022,-0.682154701,0.495650502,neg,ns,0.928948885,Camkmt,Camkmt_Intron,17,85374821,85374870,85374821,85374822,50,-,CGACAGACAGTTAAAAGCCTCTTCATGTAAGGATGTTATTTCATAAGGAC,"Intron (Camkmt-201/Camkmt, intron 3 of 10)",17,85090552,85458588,368037,1,Camkmt-201,284269,Camkmt-201,Camkmt,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,41,44,73582,ENSMUSG00000071037,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11194,cg21738601,0.0000403,0.0000113,3.580938726,0.000397306,gain,ns,0.0000113,0.0000191,0.593053401,0.553577815,pos,ns,0.018266183,0.005602827,3.260172917,0.00123731,pos,ns,2.907521495,-0.000567227,0.000192681,-2.943868867,0.003486315,neg,ns,0.240569176,Slc25a21,Slc25a21_Intron,12,56952381,56952430,56952429,56952430,50,-,TTCAACAGTCTATAATCTCTGTGACCTTGTCCCTTGATCCTGAACTGTCG,"Intron (Slc25a21-201/Slc25a21, intron 1 of 9)",12,56712634,57197472,484839,2,Slc25a21-201,245042,Slc25a21-201;Slc25a21-205;Slc25a21-202;Slc25a21-204,Slc25a21;Slc25a21;Slc25a21;Slc25a21,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,7,217593,ENSMUSG00000035472,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
1950,cg11274938,-0.0000146,0.0000056,-2.611594473,0.009450606,loss,ns,-0.00000564,0.00000951,-0.592670068,0.55383405,neg,ns,-0.00022659,0.002786517,-0.081316492,0.935242733,neg,ns,0.029075658,-0.0000836,0.0000958,-0.872886383,0.383400621,neg,ns,0.910286303,Hgf,Hgf_Exon,5,16572603,16572652,16572603,16572604,50,-,CGAAGTCTGTGACATTCCTCAGTGTTCAGAAGGTAAATAAACCTGAATGC,"Exon (Hgf-202/Hgf, exon 6 of 6)",5,16553495,16573434,19940,1,Hgf-202,19108,Hgf-202;Hgf-204;Hgf-206;Hgf-205;Hgf-201;Hgf-203,Hgf;Hgf;Hgf;Hgf;Hgf;Hgf,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,8,15234,ENSMUSG00000028864,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16521,cg23982493,6.53E-08,0.000000993,0.06570581,0.947654399,gain,ns,-0.000001,0.00000169,-0.592579741,0.553894437,neg,ns,0.001092026,0.000494452,2.208558163,0.027936808,pos,ns,1.553823224,-0.0000312,0.000017,-1.83198108,0.067913544,neg,ns,0.032974313,Tent5a,Tent5a_fiveUTR,9,85326963,85327012,85326963,85326964,50,-,CGCGCCCCGCAGAGCAGCCCCGCACCAAAAGTATCTCTGATGCATCTGGA,Promoter (<=1kb),9,85320439,85327124,6686,2,Tent5a-201,112,Tent5a-201;Tent5a-202,Tent5a;Tent5a,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,6,212943,ENSMUSG00000032265,conserved gene but different region,9,85326834,85327461,628,*,628,71,0.700636943,0.929710795,0.113057325,3.67E-58,CpGisland,TRUE,U1,Pr-A
11984,cg06801233,-0.0000056,0.00000459,-1.219116859,0.223726665,loss,ns,-0.00000462,0.0000078,-0.592576015,0.553896928,neg,ns,-0.003004669,0.002284826,-1.315053649,0.189463794,neg,ns,0.722473769,0.000151352,0.0000786,1.926215178,0.054991669,pos,ns,0.897613795,Kif23,Kif23_Exon,9,61921048,61921097,61921048,61921049,50,+,CGGAGGCTAGTTCCTGGTGGGTCAGCATGTACTTCTCACACTTAGCTAGT,Promoter (<=1kb),9,61915905,61921309,5405,2,Kif23-202,212,Kif23-202;Kif23-201;Kif23-206;Kif23-208;Kif23-212;Kif23-210;Kif23-205;Kif23-211;Kif23-204,Kif23;Kif23;Kif23;Kif23;Kif23;Kif23;Kif23;Kif23;Kif23,0;0;0;0;4024;15679;4520;5591;25663,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,71819,ENSMUSG00000032254,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22456,cg03031579,-0.00000752,0.0000024,-3.134505188,0.001886222,loss,ns,0.00000242,0.00000408,0.59252441,0.553931429,pos,ns,0.000654031,0.00119408,0.547727807,0.58427296,pos,ns,0.233384212,0.000035,0.0000411,0.851106697,0.395367029,pos,ns,0.965109547,Fam222a,Fam222a_Intron,5,114605815,114605864,114605863,114605864,50,-,CCCACTCAAAGGGCTGGTTTTAATTGGCTTAATATACTCGTTAATAACCG,"Intron (Fam222a-201/Fam222a, intron 2 of 2)",5,114568016,114613220,45205,1,Fam222a-201,37799,Fam222a-201,Fam222a,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,16,433940,ENSMUSG00000041930,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13313,cg12158066,0.0000439,0.0000119,3.676868705,0.000278219,gain,ns,0.000012,0.0000203,0.592522091,0.553932979,pos,ns,0.011283458,0.005938955,1.89990641,0.0583732,pos,ns,1.233786496,-0.0000629,0.00020424,-0.30818756,0.758146597,neg,ns,0.019630361,Egr3,Egr3_fiveUTR,14,70078035,70078084,70078083,70078084,50,-,GGATGGAGCCATGTGCGGCGTGGAGTCCCCGCGGTGGGAGAGGTACTGCG,Promoter (<=1kb),14,70077203,70079955,2753,1,Egr3-201,832,Egr3-201;Egr3-204;Egr3-203;Egr3-202,Egr3;Egr3;Egr3;Egr3,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,19,13655,ENSMUSG00000033730,conserved gene but different region,14,70077522,70078261,740,*,740,58,0.663513514,0.734126984,0.078378378,7.78E-38,CpGisland,TRUE,U3,Pr-B
24697,cg11254835,-0.0000115,0.00000287,-3.993867807,0.0000812,loss,ns,0.00000289,0.00000488,0.592518876,0.553935129,pos,ns,-0.003752171,0.001429035,-2.625667898,0.00907696,neg,ns,2.042059593,0.00010193,0.0000491,2.074093798,0.038895802,pos,ns,0.949235643,Prmt8,Prmt8_Exon,6,127689829,127689878,127689829,127689830,50,+,CGCATTTTGTAGTCATTAGATACAGATGTTTCACACAGCTGTCCCTTAAA,"Exon (Prmt8-201/Prmt8, exon 10 of 10)",6,127689011,127769472,80462,2,Prmt8-201,79594,Prmt8-201,Prmt8,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,381813,ENSMUSG00000030350,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17912,cg05696347,-0.00000302,0.00000129,-2.346077855,0.019601851,loss,ns,-0.0000013,0.00000219,-0.592427376,0.553996305,neg,ns,0.000678866,0.0006415,1.058248992,0.290765843,pos,ns,0.536456612,-0.0000135,0.0000221,-0.611260502,0.541475097,neg,ns,0.035740202,Nup54,Nup54_Exon,5,92434303,92434352,92434351,92434352,50,-,CTGCAGGATTAGCAGTTAATCCGAAACCCCCAAAATTAAACCCACTGGCG,Promoter (<=1kb),5,92415540,92435219,19680,2,Nup54-201,867,Nup54-201;Nup54-206;Nup54-202;Nup54-207;Nup54-205;Nup54-204,Nup54;Nup54;Nup54;Nup54;Nup54;Nup54,0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,269113,ENSMUSG00000034826,conserved gene and region,5,92434164,92434352,189,*,189,11,0.492063492,1.024137931,0.058201058,0.00000271,CpGisland,TRUE,NA,NRS
8166,cg01946401.2,0.000112341,0.00000866,12.97847682,4.65E-31,gain,yes,0.00000871,0.0000147,0.592394999,0.554017953,pos,ns,0.007815688,0.004308164,1.81415764,0.070620079,pos,ns,1.1510718,-0.000277614,0.000148157,-1.873778642,0.061901514,neg,ns,0.415080354,Runx2,Runx2_fiveUTR,17,44814585,44814634,44814585,44814586,50,-,CGCACTTGTGGTTCTGTGGTTGTTTGTGAGGCGAATGAAGCATTCACACA,Promoter (<=1kb),17,44607905,44814627,206723,2,Runx2-207,0,Runx2-214;Runx2-202;Runx2-204;Runx2-211;Runx2-207;Runx2-201;Runx2-206;Runx2-208;Supt3-201;Supt3-204;Supt3-202;Supt3-203,Runx2;Runx2;Runx2;Runx2;Runx2;Runx2;Runx2;Runx2;Supt3;Supt3;Supt3;Supt3,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,20,12393,ENSMUSG00000039153,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10036,cg10053307,-0.0000129,0.0000041,-3.138607908,0.001860825,loss,ns,-0.00000413,0.00000696,-0.59238128,0.554027126,neg,ns,0.000256373,0.002040275,0.12565611,0.900085597,pos,ns,0.045716188,-0.000122746,0.0000702,-1.749387358,0.081213658,neg,ns,0.930857424,Hnrnpc,Hnrnpc_Intron,14,52081736,52081785,52081784,52081785,50,-,AGAAGATGCCCACTGATGGACACAATGCAGTTATAAATAATAAAGTTCCG,"Intron (Hnrnpc-201/Hnrnpc, intron 4 of 8)",14,52073377,52104028,30652,2,Hnrnpc-201,22243,Hnrnpc-201;Hnrnpc-202;Hnrnpc-205;Hnrnpc-209;Hnrnpc-211;Hnrnpc-206;Hnrnpc-207;Hnrnpc-210;Hnrnpc-204;Hnrnpc-208;Hnrnpc-203;Hnrnpc-213,Hnrnpc;Hnrnpc;Hnrnpc;Hnrnpc;Hnrnpc;Hnrnpc;Hnrnpc;Hnrnpc;Hnrnpc;Hnrnpc;Hnrnpc;Hnrnpc,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,3,15381,ENSMUSG00000060373,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23736,cg21947443,-0.00000172,0.00000316,-0.544906421,0.586209669,loss,ns,0.00000318,0.00000537,0.592304873,0.554078215,pos,ns,0.003689683,0.001572677,2.346115709,0.019599896,pos,ns,1.70774623,-0.000150267,0.0000541,-2.778385683,0.005796127,neg,ns,0.922125481,Llph,Llph_Intergenic_downstream,10,120245913,120245962,120245913,120245914,50,+,CGATCACATTTGATCCTAATGTAATTTTGTTGGGGAATTCACTAGAATTC,Distal Intergenic,10,120227186,120232071,4886,1,Llph-202,18727,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,66225,ENSMUSG00000020224,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26349,cg19437021,0.0000212,0.00000788,2.694695337,0.007429419,gain,ns,0.00000793,0.0000134,0.592219763,0.554135127,pos,ns,0.009090267,0.003921728,2.31792396,0.02110415,pos,ns,1.675632131,-0.000240199,0.000134868,-1.780992635,0.075892756,neg,ns,0.187473657,Kiz,Kiz_Intron,2,146836871,146836920,146836871,146836872,50,+,CGGCTGGGTGTTATTTAGTGCAATATGAAATCAAATGATCCTATTTCTCA,"Intron (Gm14114-201/Gm14114-201, intron 1 of 1)",2,146855864,146970097,114234,1,Kiz-201,-18944,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,29,228730,ENSMUSG00000074749,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
7981,cg24954807,0.000121195,0.0000126,9.634539856,2.18E-19,gain,yes,-0.0000127,0.0000214,-0.592080795,0.554228058,neg,ns,0.017694404,0.006260784,2.82622816,0.005015859,pos,ns,2.299654702,-0.000178556,0.000215308,-0.829307329,0.407568634,neg,ns,0.326598309,Nepro,Nepro_Intergenic_upstream,16,44672290,44672339,44672290,44672291,50,-,CGACAGAGGTATTTGCATTCACAACCTGACTGATGACCGTATAAAATTGA,Distal Intergenic,16,44724301,44737284,12984,1,Nepro-201,-52011,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,4,212547,ENSMUSG00000036208,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24800,cg03867607,-0.0000524,0.00000846,-6.19022674,1.90E-09,loss,yes,-0.00000851,0.0000144,-0.592053849,0.554246078,neg,ns,-0.003872887,0.004209475,-0.920040373,0.358267029,neg,ns,0.445793158,-0.0000826,0.000144763,-0.57090967,0.568474494,neg,ns,0.655591912,Myl6,Myl6_threeUTR,10,128491734,128491783,128491734,128491735,50,+,CGTCACCCCGACAGGATATGCCTCACAAACGCTGCAGGAAGGAAGAGACA,3' UTR,10,128490860,128493875,3016,2,Myl6-201,2092,Myl6-201;Myl6-213;Myl6-212;Myl6-202;Myl6-206;Myl6-209;Myl6-211;Myl6-205;Myl6-203;Myl6-214;Myl6-208;Myl6-215;Myl6-207;Myl6-210;Myl6-204;Myl6b-201;Myl6b-202;Smarcc2-205;Smarcc2-201;Smarcc2-202;Smarcc2-203,Myl6;Myl6;Myl6;Myl6;Myl6;Myl6;Myl6;Myl6;Myl6;Myl6;Myl6;Myl6;Myl6;Myl6;Myl6;Myl6b;Myl6b;Smarcc2;Smarcc2;Smarcc2;Smarcc2,0;0;0;0;0;0;0;0;0;0;0;2046;2010;2362;1791;0;3773;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,1,17904,ENSMUSG00000090841,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
2715,cg18281859,0.00000129,0.00000521,0.24683156,0.805201962,gain,ns,-0.00000524,0.00000886,-0.591966416,0.554304552,neg,ns,0.002935405,0.002595519,1.130951108,0.25894985,pos,ns,0.586784337,-0.000170877,0.0000893,-1.914379858,0.056492025,neg,ns,0.871545532,Klhl14,Klhl14_Intron,18,21563577,21563626,21563577,21563578,50,+,CGACAGACCATGGCAGGTCTTTTTATCAGGTCAATGAGCTGCTAAAAATT,"Intron (Klhl14-201/Klhl14, intron 4 of 7)",18,21550377,21652368,101992,2,Klhl14-201,88742,Klhl14-201;Klhl14-202,Klhl14;Klhl14,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,38,225266,ENSMUSG00000042514,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24695,cg12393130,-0.00000455,0.0000037,-1.229751267,0.219722742,loss,ns,0.00000372,0.00000629,0.591884777,0.554359153,pos,ns,0.004405596,0.001843502,2.389797395,0.017454831,pos,ns,1.75808436,-0.000110556,0.0000634,-1.743849275,0.082176636,neg,ns,0.157752774,Neurog2,Neurog2_Promoter,3,127633078,127633127,127633078,127633079,50,-,CGGGGCAGATCTGATTGTTTTCTTGGTGGTATATAAGGGGTTTTAAGGAG,Promoter (<=1kb),3,127633135,127635631,2497,1,Neurog2-201,-57,Neurog2-201,Neurog2,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,13,14,11924,ENSMUSG00000027967,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
13418,cg24868933,-0.0000437,0.0000124,-3.536383014,0.000467598,loss,ns,0.0000124,0.000021,0.591840838,0.554388541,pos,ns,-0.014383186,0.006153835,-2.33727184,0.020061327,neg,ns,1.697640353,0.000422095,0.00021163,1.994498427,0.046973061,pos,ns,0.461701286,Myo3b,Myo3b_Intron,2,70425959,70426008,70426007,70426008,50,-,CAGCATCTGCTTGCATTCAACACAAAATCACTTTGAATTAAAAATTAACG,"Intron (Myo3b-201/Myo3b, intron 33 of 34)",2,70039126,70429195,390070,1,Myo3b-201,386833,Myo3b-201;Myo3b-203,Myo3b;Myo3b,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,6,329421,ENSMUSG00000042064,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5643,cg09016032,0.00000072,0.00000335,0.215027489,0.829887277,gain,ns,0.00000337,0.00000569,0.591827045,0.554397766,pos,ns,0.003632319,0.001666989,2.178969359,0.030086704,pos,ns,1.521625391,-0.000146974,0.0000573,-2.563762823,0.01082572,neg,ns,0.933023168,Mapkap1,Mapkap1_Intron,2,34462677,34462726,34462677,34462678,50,-,CGTGTCAAATAGCGATATGGATAAAGAAACCCAGCATTTTAAACTGTCAG,"Intron (Mapkap1-210/Mapkap1, intron 4 of 4)",2,34406771,34497716,90946,1,Mapkap1-210,55906,Mapkap1-210;Mapkap1-204;Mapkap1-211;Mapkap1-202;Mapkap1-201;Mapkap1-209;Mapkap1-203;Mapkap1-207;Mapkap1-206,Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,59,227743,ENSMUSG00000038696,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26218,cg23126716,-0.00000224,0.00000225,-0.994818033,0.320600645,loss,ns,0.00000226,0.00000382,0.591663691,0.554507031,pos,ns,-0.000461701,0.001120595,-0.41201403,0.680613888,neg,ns,0.167099193,0.0000101,0.0000385,0.262123425,0.793400379,pos,ns,0.044994457,Hs2st1,Hs2st1_fiveUTR,3,144569810,144569859,144569810,144569811,50,-,CGCCAGCAGCTGCAACTTGGGCGGCATCATAATCCTGAGGAGCCCCATGA,Promoter (<=1kb),3,144429706,144570181,140476,2,Hs2st1-201,322,Hs2st1-201;Hs2st1-202;Hs2st1-203;Selenof-203;Selenof-201;Selenof-202;Selenof-206,Hs2st1;Hs2st1;Hs2st1;Selenof;Selenof;Selenof;Selenof,0;0;0;-445;-567;-834;-855,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,6,23908,ENSMUSG00000040151,conserved gene but different region,3,144569789,144570495,707,*,707,84,0.710042433,0.959232459,0.118811881,9.67E-71,CpGisland,TRUE,U1,Pr-A
12913,cg09560544,-0.00000722,0.00000178,-4.056972301,0.000063,loss,ns,0.00000179,0.00000302,0.591658131,0.55451075,pos,ns,0.000599251,0.000885662,0.676613879,0.499155502,pos,ns,0.301764137,-0.0000388,0.0000305,-1.273403562,0.203828887,neg,ns,0.054424793,Arid5b,Arid5b_Exon,10,68277932,68277981,68277932,68277933,50,+,CGCCATGGTCGCTATTTCTGCCCTGGGGAGTGTCTTCTGGGAGGAAATAA,Promoter (<=1kb),10,68092520,68278740,186221,2,Arid5b-204,759,Arid5b-204;Arid5b-201;Arid5b-202,Arid5b;Arid5b;Arid5b,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,33,71371,ENSMUSG00000019947,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
27282,cg02077042,-0.00000604,0.0000146,-0.415187178,0.678292092,loss,ns,-0.0000146,0.0000247,-0.591610992,0.554542283,neg,ns,-0.003784125,0.007245837,-0.522248222,0.601870498,neg,ns,0.220496944,-0.0000861,0.000249184,-0.345586769,0.729887685,neg,ns,0.705007236,Gtsf1l,Gtsf1l_Intron,2,163143167,163143216,163143167,163143168,50,+,CGGTAATTAACTCAAGTGGAGCAGAACTAAGCATTTTTGACAGCCTTCCT,"Intron (Gm11454-201/Gm11454-201, intron 2 of 2)",2,163087034,163087855,822,2,Gtsf1l-201,-55312,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,5,68236,ENSMUSG00000070708,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25367,cg27137389,-0.0000317,0.0000143,-2.212081492,0.027689894,loss,ns,-0.0000144,0.0000244,-0.591591013,0.554555647,neg,ns,-0.006333415,0.007141492,-0.886847592,0.375848446,neg,ns,0.424987241,0.000313028,0.000245595,1.274568962,0.203416399,pos,ns,0.705121409,Gm9341,Gm9341_Intergenic_downstream,7,136060042,136060091,136060090,136060091,50,-,GGAACTTGTCCTCACAGCGGCGAGGCAGATGGAACAATAAATCACAGGCG,Distal Intergenic,7,135952798,135953783,986,1,Gm9341-201,107293,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,27,28,668764,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
544,cg05883326,0.0000397,0.00000468,8.476894836,9.53E-16,gain,yes,0.0000047,0.00000795,0.591575463,0.55456605,pos,ns,0.001621016,0.002329219,0.695948409,0.486982564,pos,ns,0.312486588,0.000156695,0.0000801,1.956202312,0.051339045,pos,ns,0.031694911,Dlx6,Dlx6_Exon,6,6863388,6863437,6863436,6863437,50,+,CATGACTACGATGGCTGACGGCTTGGAAGGCCAGGACTCGTCCAAATCCG,Promoter (<=1kb),6,6863334,6867970,4637,1,Dlx6-203,54,Dlx6-203;Dlx6-202;Dlx6-201;Dlx6-204,Dlx6;Dlx6;Dlx6;Dlx6,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,36,13396,ENSMUSG00000029754,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
16810,cg08670359,-0.0000271,0.0000103,-2.631364947,0.008929512,loss,ns,0.0000104,0.0000175,0.591564659,0.554573277,pos,ns,-0.001026516,0.005127601,-0.200194198,0.841459971,neg,ns,0.074966539,0.000135148,0.000176338,0.766414749,0.444012777,pos,ns,0.626290319,Esrrb,Esrrb_Intergenic_downstream,12,86571844,86571893,86571892,86571893,50,+,TGCCTCCTGATTGCAGTATTTACTTTTAATCTCCTGTGCCTCAATGCCCG,Distal Intergenic,12,86504409,86509967,5559,1,Esrrb-205,67435,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,19,26380,ENSMUSG00000021255,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7107,cg24959302,0.0000177,0.0000145,1.222959892,0.22227373,gain,ns,-0.0000146,0.0000246,-0.591501457,0.554615557,neg,ns,0.01172145,0.007212874,1.625073603,0.105163081,pos,ns,0.978136697,-0.00005,0.00024805,-0.20157988,0.840377384,neg,ns,0.775036314,Zfpm2,Zfpm2_Intron,15,40978930,40978979,40978930,40978931,50,+,CGATAAGGCGAATCCAGCACTTGTAAGAAATAAAAGAATCCAACTGTTCA,"Intron (Zfpm2-201/Zfpm2, intron 5 of 7)",15,40655035,41104592,449558,1,Zfpm2-201,323895,Zfpm2-201;Zfpm2-203,Zfpm2;Zfpm2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,41,22762,ENSMUSG00000022306,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26186,cg22870684,0.0000408,0.00000861,4.736225453,0.00000332,gain,ns,-0.00000865,0.0000146,-0.591462365,0.554641709,neg,ns,-0.013898093,0.004285438,-3.243097458,0.001311285,neg,ns,2.882302851,0.000397182,0.000147376,2.695028766,0.007422162,pos,ns,0.606661671,Shank2,Shank2_Exon,7,144285038,144285087,144285038,144285039,50,+,CGGAATTCTCTCTACAGTGACTGCATTATTGAGGAGAAGACGGTGGTCCT,"Exon (Shank2-203/Shank2, exon 15 of 23)",7,144001928,144424494,422567,1,Shank2-203,283110,Shank2-203;Shank2-206;Shank2-202;Shank2-207;Shank2-205;Shank2-201,Shank2;Shank2;Shank2;Shank2;Shank2;Shank2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,5,210274,ENSMUSG00000037541,conserved gene and region,7,144284977,144285126,150,*,150,10,0.54,0.921375921,0.066666667,0.00000279,CpGisland,TRUE,NA,NRS
17269,cg04627377,-0.00002,0.00000466,-4.291092898,0.0000238,loss,ns,0.00000468,0.00000792,0.591433239,0.554661195,pos,ns,-0.001819724,0.002318863,-0.784748112,0.433200545,neg,ns,0.363311005,0.000103918,0.0000797,1.30312283,0.193499893,pos,ns,0.87827809,Zbtb7b,Zbtb7b_Exon,3,89379776,89379825,89379776,89379777,50,-,CGCACCTCCAGGCAGTTCTGGCCTTTGAGGTGGCGCTGCAGGTGGTCCTC,"Exon (Zbtb7b-203/Zbtb7b, exon 3 of 3)",3,89377644,89387189,9546,2,Zbtb7b-203,7364,Dcst2-201;Zbtb7b-203;Zbtb7b-204;Zbtb7b-202;Zbtb7b-201;Zbtb7b-206;Zbtb7b-208;Zbtb7b-209;Zbtb7b-205,Dcst2;Zbtb7b;Zbtb7b;Zbtb7b;Zbtb7b;Zbtb7b;Zbtb7b;Zbtb7b;Zbtb7b,17801;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,12,22724,ENSMUSG00000028042,conserved gene and region,3,89379693,89380002,310,*,310,18,0.635483871,0.606785559,0.058064516,6.12E-10,CpGisland,TRUE,NA,NRS
15553,cg26419912,0.0000728,0.000017,4.286526277,0.0000243,gain,ns,0.0000171,0.0000288,0.591378037,0.554698126,pos,ns,0.01941515,0.008447264,2.298395046,0.022204553,pos,ns,1.653557965,-0.000289469,0.000290501,-0.996450048,0.319808675,neg,ns,0.451463573,Adgrl3,Adgrl3_threeUTR,5,81766195,81766244,81766243,81766244,50,+,GAGAGTTCCATTGGTTCAGGGAAAACATCTGGTTCTCGAACTCCTGGACG,3' UTR,5,81020571,81796634,776064,1,Adgrl3-223,745624,Adgrl3-223;Adgrl3-203;Adgrl3-211;Adgrl3-217;Adgrl3-232;Adgrl3-207;Adgrl3-205;Adgrl3-206;Adgrl3-208;Adgrl3-212;Adgrl3-213;Adgrl3-214;Adgrl3-215;Adgrl3-216;Adgrl3-209;Adgrl3-218;Adgrl3-219;Adgrl3-204;Adgrl3-210;Adgrl3-201;Adgrl3-202;Adgrl3-220,Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,13,319387,ENSMUSG00000037605,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21375,cg26974009,0.0000211,0.00000729,2.896722406,0.004039144,gain,ns,0.00000732,0.0000124,0.591330265,0.554730087,pos,ns,-0.000993666,0.003627188,-0.273949331,0.784306007,neg,ns,0.105514459,-0.0000704,0.000124739,-0.564360916,0.572916629,neg,ns,0.59546846,Glis1,Glis1_Intron,4,107538231,107538280,107538231,107538232,50,-,CGAGGACTGCCTTAGGTGACTTTAAAGGAGAGGGGGATAATTACTGAAAA,"Intron (Glis1-205/Glis1, intron 2 of 2)",4,107434617,107563900,129284,1,Glis1-205,103614,Glis1-205;Glis1-201;Glis1-202,Glis1;Glis1;Glis1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,11,230587,ENSMUSG00000034762,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5235,cg09967003,0.0000536,0.00000828,6.470413962,3.81E-10,gain,yes,-0.00000832,0.0000141,-0.591323214,0.554734805,neg,ns,0.006684649,0.004119893,1.622529677,0.105706479,pos,ns,0.975898394,-0.000187033,0.000141683,-1.320084432,0.187780734,neg,ns,0.225707358,Fgf18,Fgf18_Promoter,11,33146303,33146352,33146351,33146352,50,+,GCTGCTGAAGTAACAGATCAGATTTTAGCAAGTGCTTTCCAGGCCGAGCG,Promoter (<=1kb),11,33117430,33146795,29366,2,Fgf18-202,443,Fgf18-202;Fgf18-201,Fgf18;Fgf18,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,4,6,14172,ENSMUSG00000057967,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
14885,cg16206693,-5.85E-08,0.00000024,-0.243894665,0.807473731,loss,ns,-0.000000241,0.000000407,-0.591069525,0.554904549,neg,ns,-0.000281145,0.000119315,-2.35631788,0.01907919,neg,ns,1.719440069,0.00000822,0.0000041,2.002939018,0.046054197,pos,ns,0.993908947,Flot2,Flot2_threeUTR,11,78054814,78054863,78054862,78054863,50,+,CCCGCTGCGAGGACGTAGAGACGGCCGAGGGGGTAGCTTTAACTGTGACG,3' UTR,11,78037931,78060434,22504,1,Flot2-201,16883,Flot2-201;Flot2-205;Flot2-203;Flot2-202;Flot2-204,Flot2;Flot2;Flot2;Flot2;Flot2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,13,14252,ENSMUSG00000061981,conserved gene but different region,11,78054805,78054920,116,*,116,9,0.612068966,0.836538462,0.077586207,0.00000318,CpGisland,TRUE,NA,NRS
18166,cg26093175,0.0000918,0.0000139,6.589467981,1.90E-10,gain,yes,-0.000014,0.0000237,-0.591050511,0.554917272,neg,ns,0.006464844,0.00693672,0.931974183,0.352075123,pos,ns,0.45336466,-0.000451743,0.000238553,-1.893677939,0.059198686,neg,ns,0.094128005,Magi1,Magi1_fiveUTR,6,94283831,94283880,94283879,94283880,50,+,TAAGCAGATACAAAGGCTCGGCTTGTTTTGTTACAGTTCATTCTATTCCG,Promoter (<=1kb),6,93675455,94283917,608463,2,Magi1-208,37,Magi1-201;Magi1-202;Magi1-208;Magi1-205;Magi1-204,Magi1;Magi1;Magi1;Magi1;Magi1,0;0;0;0;-806,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,8,18,14924,ENSMUSG00000045095,conserved gene but different region,6,94283398,94284030,633,*,633,85,0.710900474,1.066945607,0.134281201,8.37E-77,CpGisland,TRUE,U1,Pr-A
11305,cg05984294,0.0000359,0.0000117,3.077604241,0.00227306,gain,ns,-0.0000117,0.0000198,-0.591046319,0.554920077,neg,ns,0.0000878,0.005808275,0.015113463,0.987951382,pos,ns,0.005264427,0.0000316,0.000199746,0.158090924,0.874488082,pos,ns,0.71133871,Gm13531,Gm13531_Intergenic_upstream,2,57517949,57517998,57517997,57517998,50,-,AAATCTGGGACCGCCATGCCATCTGCATGTTCAGTAGGAAACGGTACACG,Distal Intergenic,2,57425167,57425709,543,2,Gm13531-201,-92289,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,10,271788,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23218,cg23553831,0.0000605,0.0000113,5.35877501,0.000000164,gain,yes,0.0000113,0.0000192,0.591022877,0.554935763,pos,ns,0.005828628,0.005615205,1.038007973,0.3000753,pos,ns,0.522769751,-0.000115252,0.000193106,-0.596831004,0.551055836,neg,ns,0.651697317,Xylt1,Xylt1_Intron,7,117501860,117501909,117501860,117501861,50,-,CGAAGATGCCAAAAACCGCATTGTTCTTTAATTAGCTGTTGTAATTGTTT,"Intron (Xylt1-202/Xylt1, intron 2 of 6)",7,117380979,117635185,254207,1,Xylt1-202,120881,Xylt1-202;Xylt1-201;Xylt1-203,Xylt1;Xylt1;Xylt1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,6,233781,ENSMUSG00000030657,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17015,cg00542313,0.00000802,0.00000806,0.99417484,0.320913122,gain,ns,-0.0000081,0.0000137,-0.590951287,0.55498367,neg,ns,-0.003953101,0.004013695,-0.984902958,0.325439806,neg,ns,0.487529328,-0.0000516,0.000138031,-0.373791077,0.708815269,neg,ns,0.730244937,Epx,Epx_Exon,11,87872673,87872722,87872673,87872674,50,-,CGGGGAGAAGTCCAGGTCATGGTCAATGAACTGGCCCCACTGCATGAACA,"Exon (Epx-201/Epx, exon 6 of 13)",11,87864000,87875536,11537,2,Epx-201,2814,Epx-201;Epx-202,Epx;Epx,0;-905,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,13861,ENSMUSG00000052234,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2879,cg17514200,0.0000542,0.00000434,12.47149658,3.31E-29,gain,yes,-0.00000436,0.00000738,-0.590715174,0.555141688,neg,ns,-0.001478864,0.002162004,-0.684024766,0.494470528,neg,ns,0.305859589,0.000208357,0.0000744,2.802335262,0.005392742,pos,ns,0.129830402,Otx1,Otx1_Promoter,11,22003144,22003193,22003192,22003193,50,-,GTTGATCTCTCAAAATCAACTCCTTCTAATTGAAGTTGGAGCTGAAAGCG,Promoter (<=1kb),11,21996858,22002897,6040,2,Otx1-202,-296,Ehbp1-201;Ehbp1-202;Ehbp1-207;Otx1-201;Otx1-203;Otx1-202,Ehbp1;Ehbp1;Ehbp1;Otx1;Otx1;Otx1,0;0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,8,13,18423,ENSMUSG00000005917,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
19203,cg16302658,0.0000912,0.000013,7.03366771,1.29E-11,gain,yes,-0.000013,0.000022,-0.590706587,0.555147435,neg,ns,0.0000201,0.006454232,0.003112993,0.997518197,pos,ns,0.001079173,-0.0000716,0.00022196,-0.322370228,0.747389534,neg,ns,0.510433599,Wnt10b,Wnt10b_Intron,15,98776060,98776109,98776108,98776109,50,-,GAACCCCAGCAATTAGGGGAGCAGATTTAACCCTTAAACGGTTGGGGGCG,"Intron (Wnt10b-206/Wnt10b, intron 2 of 3)",15,98770712,98778143,7432,2,Wnt10b-206,2034,Wnt10b-206;Wnt10b-201;Wnt10b-203;Wnt10b-204;Wnt10b-202;Wnt10b-207;Wnt10b-205,Wnt10b;Wnt10b;Wnt10b;Wnt10b;Wnt10b;Wnt10b;Wnt10b,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,4,22410,ENSMUSG00000022996,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
14695,cg12616024,0.00000188,0.00000376,0.501091791,0.616662142,gain,ns,0.00000377,0.00000638,0.590530223,0.555265481,pos,ns,-0.000458294,0.001870093,-0.245064851,0.806568363,neg,ns,0.093358817,-0.0000752,0.0000643,-1.169560063,0.243076505,neg,ns,0.918396004,Epha4,Epha4_Intergenic_downstream,1,77310546,77310595,77310546,77310547,50,+,CGAATAACTAAAAGCTGCTTTAGAGACACATAATGTTGTCAAAGCATAAA,Distal Intergenic,1,77373613,77377607,3995,2,Epha4-203,67012,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,9,13838,ENSMUSG00000026235,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27195,cg24954915,-0.00000604,0.00000272,-2.219417517,0.027181849,loss,ns,0.00000273,0.00000462,0.590512138,0.555277586,pos,ns,-0.002223882,0.001354054,-1.642388635,0.10152344,neg,ns,0.993433675,-0.0000177,0.0000466,-0.379452114,0.704611953,neg,ns,0.929198484,Mafb,Mafb_Intergenic_upstream,2,160382447,160382496,160382495,160382496,50,-,CACTTGTTAGGAACCCCAACAAAGAGACTATTGGCTCATCTGATGAGCCG,Distal Intergenic,2,160363703,160367065,3363,2,Mafb-201,-15431,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,22,16658,ENSMUSG00000074622,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
883,cg01342157,-0.00000809,0.00000311,-2.600285272,0.009760789,loss,ns,0.00000312,0.00000529,0.590143245,0.55552454,pos,ns,0.003622147,0.001549224,2.338039251,0.020020913,pos,ns,1.698516129,-0.00015888,0.0000533,-2.982105102,0.003089768,neg,ns,0.937450982,Gm7099,Gm7099_Intergenic_upstream,12,9368850,9368899,9368850,9368851,50,-,CGGCATGAATCATGCCGATTGCTCAATTCACCACATGCCTTAATAAAAGT,Distal Intergenic,12,9429547,9430100,554,1,Gm7099-201,-60697,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,5,633030,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6646,cg21621926,-0.00000429,0.00000454,-0.94496137,0.345414523,loss,ns,-0.00000455,0.0000077,-0.590055422,0.555583341,neg,ns,-0.003563317,0.002257301,-1.578574203,0.115453581,neg,ns,0.937592592,0.00016871,0.0000776,2.1733066,0.030514056,pos,ns,0.922205757,Uri1,Uri1_Intergenic_downstream,7,37910045,37910094,37910093,37910094,50,-,GAATTAATAACTTCCCCATCACAGATAACTCCGGGTCAATATTAGATTCG,Distal Intergenic,7,37961301,37962528,1228,2,Uri1-203,52483,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,19,27,19777,ENSMUSG00000030421,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23336,cg12532350,-0.00000791,0.00000408,-1.937722369,0.053565062,loss,ns,-0.00000409,0.00000694,-0.590032024,0.555599007,neg,ns,0.005994087,0.002032408,2.949253821,0.003427786,pos,ns,2.464986361,-0.000254426,0.0000699,-3.640145028,0.000319163,neg,ns,0.097088647,Ipo13,Ipo13_Exon,4,117914296,117914345,117914296,117914297,50,+,CGTTCTCCACAGTGAAGTCCAAGGCTGGTGCTGCTCCAGCCCCTGCAGCC,Promoter (<=1kb),4,117894486,117914999,20514,2,Ipo13-201,654,Ipo13-201,Ipo13,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,230673,ENSMUSG00000033365,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U4,Pr-F
12976,cg25183962,0.00000391,0.00000691,0.565861638,0.571897202,gain,ns,-0.00000692,0.0000117,-0.589997675,0.555622006,neg,ns,0.007202562,0.003438555,2.094647668,0.037013809,pos,ns,1.431636221,-0.000269165,0.000118252,-2.276208922,0.023515224,neg,ns,0.876747198,Gm5342,Gm5342_Intergenic_upstream,7,68983281,68983330,68983281,68983282,50,+,CGTGTCCACTCATAGCCCCAGCCTAATCAGAGGTTATTAAGGAAAATATA,Distal Intergenic,7,69209884,69210886,1003,1,Gm5342-201,-226554,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,7,384741,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5976,cg01528970,-0.000002,0.00000291,-0.686077973,0.493176734,loss,ns,0.00000292,0.00000494,0.58997227,0.555639017,pos,ns,0.00114919,0.00144776,0.793771105,0.427935865,pos,ns,0.368621314,-0.0000723,0.0000498,-1.45129198,0.147709761,neg,ns,0.897346538,Gm50318,Gm50318_threeUTR,18,35660267,35660316,35660267,35660268,50,+,CGGGCCTCCCGCCTACCATTGCACTTGGTGATGAGCTGGTCCTTCTTGCT,3' UTR,18,35647268,35662163,14896,2,Gm50318-201,1847,Gm50318-201;Spata24-201;Spata24-205;Spata24-203;Spata24-202;Spata24-204;Spata24-207;Spata24-206,Gm50318;Spata24;Spata24;Spata24;Spata24;Spata24;Spata24;Spata24,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25107,cg07768842,0.0000125,0.00000283,4.403595322,0.0000147,gain,ns,0.00000284,0.00000481,0.58992481,0.555670796,pos,ns,0.00542352,0.001410434,3.845283952,0.000146147,pos,ns,3.835211359,-0.0000589,0.0000485,-1.213889632,0.225713857,neg,ns,0.034476731,Ahdc1,Ahdc1_Intron,4,133012637,133012686,133012637,133012638,50,-,CGCCTTTGGATTTAAAACTGCAATTTGCTCTCCAGCTTGCTGAGAATGTG,"Intron (Ahdc1-210/Ahdc1, intron 2 of 3)",4,133011260,133060820,49561,1,Ahdc1-210,1377,Ahdc1-210;Ahdc1-203;Ahdc1-204;Ahdc1-205;Ahdc1-207;Ahdc1-211;Ahdc1-209;Ahdc1-206;Ahdc1-201,Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,35,49,230793,ENSMUSG00000037692,conserved gene but different region,4,133011897,133012638,742,*,742,79,0.735849057,0.803768048,0.106469003,2.31E-62,CpGisland,TRUE,U2,Pr-W
17900,cg21311909,-0.0000225,0.00000884,-2.548578444,0.011298201,loss,ns,0.00000885,0.000015,0.589907159,0.555682615,pos,ns,0.004660507,0.004397512,1.059805492,0.290058134,pos,ns,0.537514952,-0.000361403,0.00015123,-2.389756717,0.017456728,neg,ns,0.795941851,Dlg2,Dlg2_Exon,7,92417263,92417312,92417263,92417264,50,-,CGAAAATTCCCATTCTACAAGAACAAGGAGCAGAGTGAGCAGGAAACCAG,"Exon (Dlg2-201/Dlg2, exon 17 of 23)",7,90477231,92449247,1972017,1,Dlg2-217,1940032,Dlg2-217;Dlg2-204;Dlg2-201;Dlg2-220;Dlg2-218;Dlg2-219;Dlg2-203;Dlg2-202;Dlg2-212;Dlg2-208;Dlg2-207;Dlg2-214,Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,21,23859,ENSMUSG00000052572,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2388,cg22675140,0.000045,0.00000717,6.276793114,1.16E-09,gain,yes,0.00000719,0.0000122,0.589874716,0.55570434,pos,ns,0.009759305,0.003568514,2.734837589,0.006600275,pos,ns,2.180437996,-0.000391851,0.000122721,-3.193025777,0.001552516,neg,ns,0.110980039,Tfap2b,Tfap2b_Intron,1,19231866,19231915,19231866,19231867,50,-,CGTAATTTAAAGAAATATATGGAAGGCTGAAAAATCATTTGCTCAAATTT,"Intron (Tfap2b-201/Tfap2b, intron 6 of 6)",1,19208914,19238576,29663,1,Tfap2b-201,22952,Tfap2b-201;Tfap2b-204;Tfap2b-202,Tfap2b;Tfap2b;Tfap2b,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,40,21419,ENSMUSG00000025927,conserved gene and region,1,19231763,19231867,105,*,105,11,0.561904762,1.336805556,0.104761905,6.39E-09,CpGisland,TRUE,NA,NRS
1208,cg23702410,0.0000484,0.00000847,5.712452807,2.61E-08,gain,yes,-0.00000848,0.0000144,-0.589841954,0.555726278,neg,ns,0.008293737,0.004214324,1.967987567,0.049960481,pos,ns,1.301373392,-0.00015348,0.00014493,-1.058994791,0.290426598,neg,ns,0.518107096,Bcor,Bcor_Intron,X,12062462,12062511,12062462,12062463,50,-,CGTGATTTATCCTCGTGCAGGATTTTAATTGCTCTTTGGAGGTTGAGCCG,"Intron (Bcor-202/Bcor, intron 1 of 14)",20,12036740,12080553,43814,2,Bcor-202,18042,Bcor-202;Bcor-203;Bcor-204;Bcor-206;Bcor-201;Bcor-207;Bcor-205,Bcor;Bcor;Bcor;Bcor;Bcor;Bcor;Bcor,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,56,74,71458,ENSMUSG00000040363,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24712,cg10168884,-0.00000163,0.000000677,-2.409011218,0.016578721,loss,ns,-0.000000678,0.00000115,-0.589799996,0.555754375,neg,ns,0.0000494,0.000336833,0.146532867,0.88359599,pos,ns,0.053746264,-0.0000137,0.0000116,-1.184643983,0.237065666,neg,ns,0.014982281,Ccnt2,Ccnt2_Exon,1,127774244,127774293,127774292,127774293,50,-,GAGCTTCTTCTCGCTGGTTCTTTACTCGGGAACAGCTGGAGAACACGCCG,Promoter (<=1kb),1,127774164,127793589,19426,1,Ccnt2-203,80,Ccnt2-203;Ccnt2-204;Ccnt2-206;Ccnt2-205;Ccnt2-202;Ccnt2-201,Ccnt2;Ccnt2;Ccnt2;Ccnt2;Ccnt2;Ccnt2,0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,11,72949,ENSMUSG00000026349,conserved gene and region,1,127773875,127774860,986,*,986,93,0.643002028,0.927282104,0.094320487,5.41E-68,CpGisland,TRUE,U1,Pr-A
11646,cg26537410,-0.000000567,0.000000419,-1.353099715,0.177009702,loss,ns,-0.00000042,0.000000712,-0.589673125,0.555839338,neg,ns,0.000282636,0.000208659,1.354535471,0.176552013,pos,ns,0.753127326,-0.0000203,0.00000718,-2.827060541,0.005003171,neg,ns,0.008845096,Mcu,Mcu_fiveUTR,10,59616647,59616696,59616647,59616648,50,+,CGATCTACCTGCGGCGGCCGCCATCTCTCAACTGGAAACGGCGCCGACCC,Promoter (<=1kb),10,59446984,59616692,169709,2,Mcu-202,0,Mcu-202;Mcu-204;Mcu-203;Mcu-205,Mcu;Mcu;Mcu;Mcu,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,3,215999,ENSMUSG00000009647,conserved gene but different region,10,59616124,59616735,612,*,612,74,0.745098039,0.876061515,0.120915033,4.96E-63,CpGisland,TRUE,NA,NRS
3452,cg02521592,0.000109981,0.0000159,6.93750158,2.33E-11,gain,yes,-0.0000159,0.0000269,-0.589602194,0.555886842,neg,ns,0.029138254,0.007890235,3.692951475,0.000261892,pos,ns,3.58187711,-0.0008176,0.000271345,-3.013145108,0.002798729,neg,ns,0.482971929,Bcl11a,Bcl11a_Intron,11,24091744,24091793,24091792,24091793,50,-,TTTACAATAGGCGCACAGTTACTGCACCTTGGAGGAGCTCTCAGGTGCCG,"Intron (Bcl11a-201/Bcl11a, intron 2 of 4)",11,24078056,24173194,95139,1,Bcl11a-201,13688,Bcl11a-201;Bcl11a-203;Bcl11a-205;Bcl11a-202;Bcl11a-204,Bcl11a;Bcl11a;Bcl11a;Bcl11a;Bcl11a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,98,14025,ENSMUSG00000000861,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26321,cg07680319,-0.00000367,0.00000719,-0.511046854,0.609682014,loss,ns,0.0000072,0.0000122,0.58941465,0.556012454,pos,ns,-0.001629879,0.003576646,-0.455700386,0.648924481,neg,ns,0.187805842,-0.0000508,0.000123001,-0.413282371,0.679685475,neg,ns,0.787613498,Gm14111,Gm14111_Intergenic_downstream,2,146723530,146723579,146723530,146723531,50,-,CGAGCTGCTCAGAATTAATGAGCTAACCCAGTAAGAAAAGAATGGCCAAT,Distal Intergenic,2,146754707,146755705,999,2,Gm14111-201,32175,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,15,17,668918,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1128,cg14281595,-0.00000706,0.00000739,-0.955957443,0.339838614,loss,ns,0.0000074,0.0000126,0.58940373,0.556019768,pos,ns,-0.001364359,0.003677645,-0.370987111,0.710900526,neg,ns,0.148191165,-0.000137533,0.000126474,-1.087442594,0.277686017,neg,ns,0.849261044,Gm14513,Gm14513_Intergenic_upstream,X,11708586,11708635,11708634,11708635,50,+,TAGAATAATTAGCACAGCATTTGGCTGCCTCTCCTCCTGCTCTGCGGGCG,Distal Intergenic,20,11684002,11684124,123,2,Gm14513-201,-24462,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,9,668984,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27861,cg13193449,-0.000015,0.00000433,-3.462189021,0.00061108,loss,ns,0.00000433,0.00000735,0.589339262,0.55606295,pos,ns,-0.005361368,0.002154361,-2.488611316,0.013348942,neg,ns,1.874553145,0.000196108,0.0000741,2.64694763,0.008537128,pos,ns,0.92011937,Ush2a,Ush2a_Exon,1,188714333,188714382,188714381,188714382,50,-,TCATCTGCCACTCCAACCAGTCTTCAGGTTGTCTGGTCTACACCAGCTCG,"Exon (Ush2a-201/Ush2a, exon 38 of 71)",1,188263034,188965041,702008,1,Ush2a-201,451299,Ush2a-201,Ush2a,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,36,22283,ENSMUSG00000026609,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24328,cg18802092,-0.00000204,0.00000407,-0.50080236,0.616865606,loss,ns,-0.00000408,0.00000692,-0.589108527,0.556217515,neg,ns,-0.0000128,0.002026828,-0.006304392,0.994973912,neg,ns,0.002188306,-0.0000267,0.0000697,-0.38297182,0.702003126,neg,ns,0.927791596,Sema6d,Sema6d_Exon,2,124660700,124660749,124660748,124660749,50,-,TTTAGAAATTTTGCCTACTTCAACTACACCAGATTACAAAATATTTGGCG,"Exon (Sema6d-209/Sema6d, exon 16 of 16)",2,124089969,124667769,577801,1,Sema6d-208,570731,Sema6d-208;Sema6d-209;Sema6d-201;Sema6d-202;Sema6d-203;Sema6d-204;Sema6d-206;Sema6d-207;Sema6d-205,Sema6d;Sema6d;Sema6d;Sema6d;Sema6d;Sema6d;Sema6d;Sema6d;Sema6d,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,5,214968,ENSMUSG00000027200,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16741,cg07224103,-0.00000188,0.000000914,-2.058034666,0.04042253,loss,ns,-0.000000915,0.00000155,-0.589080543,0.556236263,neg,ns,0.000147675,0.000454962,0.324586898,0.745712664,pos,ns,0.127428482,-0.0000407,0.0000156,-2.602068442,0.009711284,neg,ns,0.016030715,Med13,Med13_Promoter,11,86358256,86358305,86358304,86358305,50,+,AATTCACGGGTTTTCCCTTCGCTTTAATGGCGGCCACAGGGACCAGCTCG,Promoter (<=1kb),11,86267033,86357602,90570,2,Med13-201,-654,Med13-201,Med13,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,12,327987,ENSMUSG00000034297,conserved gene and region,11,86357880,86358483,604,*,604,54,0.655629139,0.833316301,0.089403974,1.92E-38,CpGisland,TRUE,U1,Pr-A
22044,cg22909904,0.00000318,0.00000551,0.575795202,0.565171364,gain,ns,0.00000552,0.00000937,0.588969707,0.556310519,pos,ns,0.00197769,0.002744599,0.720575199,0.471713918,pos,ns,0.32632131,-0.000107092,0.0000944,-1.13461513,0.25741317,neg,ns,0.8897614,Elavl4,Elavl4_fiveUTR,4,110290736,110290785,110290736,110290737,50,+,CGTCTGCAAAGGGTTCTTCAATTTTCTTGCGCACCACGGAACAGTCAATA,5' UTR,4,110203737,110292722,88986,2,Elavl4-206,1937,Elavl4-204;Elavl4-201;Elavl4-203;Elavl4-202;Elavl4-205;Elavl4-206;Elavl4-207;Elavl4-208;Elavl4-212;Elavl4-209,Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,7,36,15572,ENSMUSG00000028546,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19191,cg26535952,-0.0000136,0.00000618,-2.201832601,0.028413432,loss,ns,-0.00000618,0.0000105,-0.588739116,0.556465021,neg,ns,0.001190852,0.003073428,0.387466924,0.698676457,pos,ns,0.155723891,0.00000766,0.000105695,0.0724689,0.942275488,pos,ns,0.800149366,Nr1d1,Nr1d1_threeUTR,11,98768216,98768265,98768216,98768217,50,+,CGGGTCACTGGGCGTCCACCCGGAAGGACAGCAGCTTCTCGGAATGCATG,3' UTR,11,98767932,98775333,7402,2,Nr1d1-201,7068,Nr1d1-201;Nr1d1-202;Thra-201;Thra-202;Thra-203,Nr1d1;Nr1d1;Thra;Thra;Thra,0;2161;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,9,217166,ENSMUSG00000020889,mapped to different genes,11,98768145,98768493,349,*,349,27,0.633237822,0.781732205,0.077363897,8.51E-18,CpGisland,TRUE,U6,En-Sp
19441,cg27179109,-0.00002,0.00000771,-2.590735002,0.010029797,loss,ns,-0.00000771,0.0000131,-0.588707297,0.556486343,neg,ns,0.022487539,0.003837166,5.860455899,1.18E-08,pos,ns,7.92825663,-0.000434771,0.00013196,-3.294723485,0.001099327,neg,ns,0.882246618,Prpf40b,Prpf40b_Exon,15,99315195,99315244,99315243,99315244,50,+,GTGAGCGTTTTGTGTGTGACTCAGCCTTTGAGCAGATCACCCTGGAGTCG,"Exon (Prpf40b-214/Prpf40b, exon 19 of 24)",15,99295239,99317018,21780,1,Prpf40b-214,19956,Fmnl3-201;Fmnl3-203;Fmnl3-202;Prpf40b-214;Prpf40b-206;Prpf40b-209;Prpf40b-212;Prpf40b-208;Prpf40b-201;Prpf40b-202;Prpf40b-210;Prpf40b-215;Prpf40b-203;Prpf40b-207;Prpf40b-213;Prpf40b-204,Fmnl3;Fmnl3;Fmnl3;Prpf40b;Prpf40b;Prpf40b;Prpf40b;Prpf40b;Prpf40b;Prpf40b;Prpf40b;Prpf40b;Prpf40b;Prpf40b;Prpf40b;Prpf40b,55205;55205;55238;0;0;0;0;0;0;0;0;0;0;0;0;-296,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,10,54614,ENSMUSG00000023007,conserved gene but different region,15,99315183,99315264,82,*,82,8,0.609756098,1.051282051,0.097560976,0.00000265,CpGisland,TRUE,NA,NRS
21173,cg23864212,-0.0000182,0.00000729,-2.498187759,0.013000736,loss,ns,0.00000728,0.0000124,0.588452865,0.556656847,pos,ns,-0.004212007,0.003626611,-1.161416816,0.246365915,neg,ns,0.608419377,-0.0000838,0.000124719,-0.672240009,0.501931632,neg,ns,0.852551828,Gm17053,Gm17053_Intergenic_upstream,12,106626957,106627006,106627005,106627006,50,+,TTATTCTGATTCTTGTTAGAATTGTTTATCACCCTGACAGGCCAGACTCG,Distal Intergenic,12,106544837,106546326,1490,2,Gm17053-201,-80631,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,6,108167962,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U14,Hc-H
25300,cg24176376,-0.0000114,0.0000136,-0.835397059,0.404137569,loss,ns,-0.0000136,0.0000231,-0.588306327,0.556755059,neg,ns,-0.006659599,0.006763197,-0.984682125,0.325548127,neg,ns,0.487384799,0.000572121,0.000232586,2.459826758,0.01444595,pos,ns,0.909628903,Lrp6,Lrp6_Exon,6,134541823,134541872,134541871,134541872,50,+,CCAGAAACAACAACATTCTGCACACTCTCAGTTTTGTTAAATTCTGTTCG,"Exon (Lrp6-201/Lrp6, exon 2 of 23)",6,134446476,134566913,120438,2,Lrp6-201,25041,Lrp6-201;Lrp6-203;Lrp6-205,Lrp6;Lrp6;Lrp6,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,11,16974,ENSMUSG00000030201,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3094,cg04446004,0.000119551,0.0000103,11.6615792,2.67E-26,gain,yes,-0.0000102,0.0000174,-0.588254809,0.556789589,neg,ns,0.01449733,0.005102374,2.841290988,0.004790726,pos,ns,2.319598661,-0.000258396,0.00017547,-1.472590991,0.141875897,neg,ns,0.126648146,Lhfpl3,Lhfpl3_Exon,5,22746278,22746327,22746278,22746279,50,-,CGCGGGCCATCGGCGTGCTGTGGGCCATCTTCACCATCTGCTTTGCCATC,Promoter (<=1kb),5,22746059,23275597,529539,1,Lhfpl3-202,219,Lhfpl3-202,Lhfpl3,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,11,269629,ENSMUSG00000106379,conserved gene and region,5,22746271,22746758,488,*,488,33,0.610655738,0.733834587,0.067622951,9.76E-20,CpGisland,TRUE,U3,Pr-B
11793,cg07414989,0.000000636,0.00000146,0.435087348,0.66380177,gain,ns,-0.00000146,0.00000248,-0.588103704,0.556890874,neg,ns,0.001077592,0.000727962,1.480286283,0.139812427,pos,ns,0.854454224,-0.000037,0.000025,-1.476494325,0.140826311,neg,ns,0.964131563,Mbnl1,Mbnl1_Intron,3,60621963,60622012,60622011,60622012,50,-,TCTCTCCTTGGAATGTTGTCCTGCTTTGCGCTGTGATTGCATGTCACTCG,"Intron (Mbnl1-211/Mbnl1, intron 6 of 8)",3,60473079,60628200,155122,1,Mbnl1-211,148884,Mbnl1-216;Mbnl1-211;Mbnl1-201;Mbnl1-202;Mbnl1-203;Mbnl1-218;Mbnl1-219;Mbnl1-214;Mbnl1-207;Mbnl1-205;Mbnl1-212;Mbnl1-215;Mbnl1-223;Mbnl1-213,Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,36,56758,ENSMUSG00000027763,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7691,cg22167350,-0.000000969,0.00000219,-0.44215774,0.658683374,loss,ns,-0.00000219,0.00000372,-0.588012636,0.556951921,neg,ns,0.002323606,0.001091281,2.129246255,0.034021715,pos,ns,1.468243802,-0.00000952,0.0000375,-0.253717765,0.799881799,neg,ns,0.946289981,Cc2d2a,Cc2d2a_Exon,5,43718620,43718669,43718620,43718621,50,-,CGGAAGAAGGTGACAGCCCAAAACCTGTCTGATGGAGACATAAAGCTGCT,"Exon (Cc2d2a-201/Cc2d2a, exon 26 of 40)",5,43662346,43740972,78627,1,Cc2d2a-201,56274,Cc2d2a-201;Cc2d2a-202;Cc2d2a-203,Cc2d2a;Cc2d2a;Cc2d2a,0;0;22038,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,231214,ENSMUSG00000039765,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7940,cg22044223,0.0000186,0.00000917,2.02336355,0.043893481,gain,ns,-0.00000916,0.0000156,-0.587865893,0.557050296,neg,ns,-0.005213093,0.00456404,-1.142210237,0.254248084,neg,ns,0.594742311,0.0000976,0.000156957,0.621788134,0.534538194,pos,ns,0.879102428,Hif1an,Hif1an_Intron,19,44644049,44644098,44644097,44644098,50,+,AAAGGGTTGAAGTCAGCAGTTTCAAACTTGTTTTCCTTAATTACTTTCCG,"Intron (Gm35460-201/Gm35460-201, intron 5 of 6)",19,44562850,44576274,13425,1,Hif1an-201,81199,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,31,319594,ENSMUSG00000036450,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18441,cg13165619,0.000000763,0.00000896,0.085148942,0.932197946,gain,ns,-0.00000895,0.0000152,-0.587848286,0.5570621,neg,ns,0.036469485,0.004459173,8.178531007,7.47E-15,pos,yes,14.12680049,-0.001121467,0.000153351,-7.313090865,2.24E-12,neg,yes,0.823122201,Cnot1,Cnot1_threeUTR,8,95733270,95733319,95733270,95733271,50,+,CGATCAATCATTGCTTCATAGTTGGATCGCACTACTTCCATCAGCTGGGG,3' UTR,8,95719451,95807462,88012,2,Cnot1-202,74143,Cnot1-202;Cnot1-201;Cnot1-203;Cnot1-208;Cnot1-216;Cnot1-211;Cnot1-212;Cnot1-213;Cnot1-215;Cnot1-206;Cnot1-210,Cnot1;Cnot1;Cnot1;Cnot1;Cnot1;Cnot1;Cnot1;Cnot1;Cnot1;Cnot1;Cnot1,0;0;0;0;0;0;0;-534;3410;6863;5217,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,8,24,234594,ENSMUSG00000036550,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24737,cg25683012,-0.00000442,0.00000115,-3.829357126,0.000155475,loss,ns,0.00000115,0.00000196,0.587787267,0.55710301,pos,ns,0.000176165,0.0005747,0.30653471,0.759403338,pos,ns,0.119527498,-0.0000106,0.0000198,-0.538414414,0.590677357,neg,ns,0.03061082,Baz2a,Baz2a_fiveUTR,10,128091583,128091632,128091631,128091632,50,+,GTCTGTCACACAGGGACATCACCCTACAGCAGTTCAGGCTGTGTGGTTCG,Promoter (<=1kb),10,128091610,128129302,37693,1,Baz2a-203,0,Atp5b-201;Atp5b-205;Atp5b-203;Atp5b-209;Atp5b-202;Atp5b-206;Atp5b-204;Baz2a-204;Baz2a-209;Baz2a-203;Baz2a-206;Baz2a-208;Baz2a-205;Baz2a-201;Baz2a-202;Baz2a-207,Atp5b;Atp5b;Atp5b;Atp5b;Atp5b;Atp5b;Atp5b;Baz2a;Baz2a;Baz2a;Baz2a;Baz2a;Baz2a;Baz2a;Baz2a;Baz2a,8310;5837;5353;3902;3092;3031;2542;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,7,116848,ENSMUSG00000040054,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
16482,cg07054902,-0.0000208,0.00000714,-2.912062199,0.003851064,loss,ns,-0.00000713,0.0000121,-0.58772846,0.557142438,neg,ns,0.000962702,0.003553513,0.270915645,0.786636209,pos,ns,0.104226067,-0.000118972,0.000122205,-0.973542811,0.331042628,neg,ns,0.876575973,Dmd,Dmd_Exon,X,85144901,85144950,85144949,85144950,50,+,TGTTTTGCAGTCCCGTTACTCTGATCAACTTCTGGCCAGTAGATTCTGCG,"Exon (Dmd-203/Dmd, exon 71 of 79)",20,82948903,85206141,2257239,1,Dmd-203,2195998,Dmd-203;Dmd-215;Dmd-210;Dmd-207;Dmd-214;Dmd-212;Dmd-202;Dmd-201,Dmd;Dmd;Dmd;Dmd;Dmd;Dmd;Dmd;Dmd,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,20,28,13405,ENSMUSG00000045103,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20910,cg22950745,0.0000527,0.0000116,4.529563789,0.00000844,gain,ns,-0.0000116,0.0000198,-0.587683568,0.557172537,neg,ns,0.013217746,0.005786102,2.284395695,0.023023929,pos,ns,1.637820571,-0.000280381,0.000198984,-1.409065516,0.159818077,neg,ns,0.201384653,Pax6,Pax6_Intron,2,105686971,105687020,105686971,105686972,50,+,CGACATGAATAAGCGTCTAGTTGAAGGAGACAGCTGTAGAAATGTTCCAC,"Intron (Pax6-206/Pax6, intron 7 of 12)",2,105668900,105697364,28465,1,Pax6-206,18071,Pax6-206;Pax6-207;Pax6-210;Pax6-214;Pax6-208;Pax6-202;Pax6-205;Pax6-225;Pax6-204;Pax6-201;Pax6-203;Pax6-224;Pax6-219;Pax6-221;Pax6-213;Pax6-211;Pax6-222;Pax6-212;Pax6-215;Pax6-223;Pax6-209;Pax6-216,Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,78,18508,ENSMUSG00000027168,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
24393,cg14583440,-0.00000368,0.00000308,-1.196847375,0.232280523,loss,ns,0.00000307,0.00000522,0.587554201,0.55725928,pos,ns,0.000346127,0.001530541,0.226146576,0.821236453,pos,ns,0.085531781,-0.0000414,0.0000526,-0.7870445,0.431857103,neg,ns,0.903323004,Chd4,Chd4_Exon,6,125123589,125123638,125123589,125123590,50,+,CGCTATGCCATCCTCAATGAGCCTTTCAAGGGTGAAATGAACCGTGGCAA,"Exon (Chd4-203/Chd4, exon 37 of 39)",6,125095981,125130585,34605,1,Chd4-203,27608,Chd4-203;Chd4-201;Chd4-202;Chd4-204;Chd4-205,Chd4;Chd4;Chd4;Chd4;Chd4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,15,107932,ENSMUSG00000063870,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1921,cg09085789,0.00000528,0.0000117,0.452171674,0.651461546,gain,ns,0.0000117,0.0000199,0.587269548,0.557450168,pos,ns,-0.001423095,0.005816601,-0.244660878,0.806880886,neg,ns,0.093190572,-0.000131559,0.000200032,-0.657690416,0.511225137,neg,ns,0.66367432,Gm3148,Gm3148_Intergenic_downstream,6,16328314,16328363,16328314,16328315,50,-,CGGTAGCTCCTGCATTTGCCTGTTTCTGGTGTTAATTATCTTTTGTTTGC,Distal Intergenic,6,16237627,16238238,612,1,Gm3148-201,90736,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,6,100041116,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25546,cg20609986,-0.000006,0.00000415,-1.446569833,0.14902778,loss,ns,-0.00000414,0.00000705,-0.587257879,0.557457994,neg,ns,0.000624668,0.002064516,0.302573492,0.762417838,pos,ns,0.117806951,-0.0000972,0.000071,-1.369522217,0.17182735,neg,ns,0.944488968,Ebf3,Ebf3_Intron,7,137207445,137207494,137207445,137207446,50,+,CGAAAGTTGAGGACCACAATATGATTTGACATTCCATCATACATCCCGGA,"Intron (Ebf3-204/Ebf3, intron 10 of 15)",7,137193673,137314445,120773,2,Ebf3-204,106951,Ebf3-204;Ebf3-201;Ebf3-202;Ebf3-203;Ebf3-208;Ebf3-205,Ebf3;Ebf3;Ebf3;Ebf3;Ebf3;Ebf3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,62,84,13593,ENSMUSG00000010476,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26208,cg08797876,-0.0000251,0.00000501,-5.013377941,0.000000901,loss,yes,0.00000499,0.0000085,0.587228874,0.557477446,pos,ns,-0.005895866,0.002491079,-2.366791593,0.018557305,neg,ns,1.731485089,0.0000473,0.0000857,0.552229444,0.581189074,pos,ns,0.948471798,Sox5,Sox5_Intron,6,144453499,144453548,144453547,144453548,50,+,CAACAGTAAAACAACCTAATAGCTTAGCATGCCAGGGGGCTAATGTGGCG,"Intron (Sox5-209/Sox5, intron 3 of 13)",6,143843739,144781977,938239,2,Sox5-209,328429,Sox5-209;Sox5-212,Sox5;Sox5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,71,20678,ENSMUSG00000041540,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22242,cg00758003,0.00000154,0.00000218,0.708200822,0.479352708,gain,ns,-0.00000218,0.00000371,-0.587126903,0.557545837,neg,ns,0.000641398,0.001085694,0.590772346,0.555103424,pos,ns,0.255626094,-0.0000333,0.0000373,-0.89195583,0.373108418,neg,ns,0.9323224,Mical2,Mical2_Exon,7,112303621,112303670,112303621,112303622,50,+,CGCACTGCCATTGAACTTGCCTACCTGGGAGCCAAAGTGGTCGTGGTGGA,"Exon (Mical2-203/Mical2, exon 4 of 20)",7,112225856,112355194,129339,1,Mical2-203,77765,Mical2-203;Mical2-206;Mical2-207;Mical2-202,Mical2;Mical2;Mical2;Mical2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,320878,ENSMUSG00000038244,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3373,cg11627683,-0.0000019,0.00000167,-1.139311754,0.255452735,loss,ns,-0.00000166,0.00000283,-0.587027758,0.557612337,neg,ns,-0.0007674,0.000829883,-0.924707808,0.35583716,neg,ns,0.4487487,0.0000178,0.0000285,0.623931138,0.533131658,pos,ns,0.071671727,Papolg,Papolg_fiveUTR,11,23895178,23895227,23895226,23895227,50,-,GAGTAGTGAAAACACCACAAAACCGGCTCTATTTATGACAATACAGCGCG,Promoter (<=1kb),11,23862646,23895253,32608,2,Papolg-201,26,Papolg-201;Papolg-204;Papolg-202,Papolg;Papolg;Papolg,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,9,216578,ENSMUSG00000020273,conserved gene and region,11,23895124,23895356,233,*,233,19,0.639484979,0.894343434,0.081545064,4.21E-13,CpGisland,TRUE,NA,NRS
9565,cg08352408,0.0000715,0.00000659,10.85674958,1.74E-23,gain,yes,-0.00000657,0.0000112,-0.586962985,0.557655784,neg,ns,0.011936788,0.003277828,3.641676424,0.000317348,pos,ns,3.498464341,-0.000287336,0.000112724,-2.54901496,0.011284365,neg,ns,0.079577588,Foxg1,Foxg1_Promoter,12,49381723,49381772,49381771,49381772,50,+,TACTCCACATCAGTAAATGTTTACGTAACCTGTCCTTTCCCAAGAATCCG,Promoter (<=1kb),12,49382660,49384364,1705,1,Foxg1-202,-888,Foxg1-202;Foxg1-203;Foxg1-204;Foxg1-201;Gm43517-201,Foxg1;Foxg1;Foxg1;Foxg1;Gm43517,0;-1028;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,11,27,15228,ENSMUSG00000020950,mapped to different genes,12,49381746,49381860,115,*,115,11,0.556521739,1.280364373,0.095652174,1.73E-08,CpGisland,TRUE,U13,Hc-P
18893,cg23337318,-0.00000281,0.00000757,-0.371052963,0.710851528,loss,ns,0.00000755,0.0000129,0.586942815,0.557669314,pos,ns,0.016993782,0.003766728,4.511550461,0.00000915,pos,ns,5.038810346,-0.000171062,0.000129537,-1.320556346,0.187623425,neg,ns,0.209520473,Nfia,Nfia_Intron,4,97844974,97845023,97844974,97844975,50,+,CGTGGCAGCCTGCAGCACTGTGTATGGTTTAAATTAAACCTTTTTTTGGA,"Intron (Nfia-208/Nfia, intron 2 of 3)",4,97772734,98000466,227733,1,Nfia-208,72240,Nfia-208;Nfia-202;Nfia-203;Nfia-205;Nfia-201;Nfia-204,Nfia;Nfia;Nfia;Nfia;Nfia;Nfia,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,44,18027,ENSMUSG00000028565,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
695,cg26615762,0.0000215,0.00000659,3.257469371,0.001248758,gain,ns,-0.00000657,0.0000112,-0.586907282,0.557693149,neg,ns,-0.006565545,0.003281496,-2.000778022,0.046287988,neg,ns,1.334531699,0.000350742,0.00011285,3.108028459,0.002057968,pos,ns,0.846005923,Adam22,Adam22_Exon,5,8144248,8144297,8144248,8144249,50,+,CGAGCAAATCCCACCAATATAAGCTGCCCCGCTCCGGCTACTCTCAAATT,"Exon (Adam22-202/Adam22, exon 12 of 30)",5,8072352,8367982,295631,2,Adam22-202,223685,Adam22-202;Adam22-204;Adam22-206;Adam22-203;Adam22-207;Adam22-201;Adam22-205,Adam22;Adam22;Adam22;Adam22;Adam22;Adam22;Adam22,0;0;0;0;0;0;223784,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,11496,ENSMUSG00000040537,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20382,cg03433736,0.0000439,0.00000557,7.871732493,5.91E-14,gain,yes,0.00000556,0.00000947,0.586646815,0.557867883,pos,ns,0.002167743,0.002774183,0.781398649,0.435164411,pos,ns,0.361346629,0.000146388,0.0000954,1.534404069,0.125950206,pos,ns,0.108236573,Hoxc5,Hoxc5_Intron,15,103014593,103014642,103014593,103014594,50,-,CGGGGCAAATAAAGAAAAAAAACCTGCGGCCATAAATTTTACGATCCAGG,"Intron (Hoxc5-202/Hoxc5, intron 1 of 1)",15,102967443,103015676,48234,1,Hoxc5-202,47150,Hoxc4-202;Hoxc5-202;Hoxc5-201;Hoxc6-202;Hoxc6-203;Hoxc6-201,Hoxc4;Hoxc5;Hoxc5;Hoxc6;Hoxc6;Hoxc6,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,46,134,15424,ENSMUSG00000022485,mapped to different genes,15,103014167,103014734,568,*,568,41,0.588028169,0.835773758,0.072183099,1.73E-25,CpGisland,TRUE,U13,Hc-P
15856,cg20183886,-0.00000103,0.00000144,-0.712302799,0.476813038,loss,ns,0.00000144,0.00000245,0.586420236,0.558019905,pos,ns,0.000524291,0.000717273,0.730949842,0.465361892,pos,ns,0.332209184,-0.000012,0.0000247,-0.487920626,0.62595097,neg,ns,0.961849744,Mef2c,Mef2c_threeUTR,13,83666880,83666929,83666880,83666881,50,-,CGGCATAAGCTGGACTTTGTCGCCACTAGATGACAAGATGTTATAACTAA,3' UTR,13,83504240,83667078,162839,1,Mef2c-201,162640,Mef2c-218;Mef2c-228;Mef2c-201;Mef2c-202;Mef2c-222;Mef2c-223;Mef2c-227;Mef2c-213;Mef2c-214;Mef2c-212;Mef2c-203;Mef2c-219;Mef2c-225;Mef2c-230;Mef2c-211,Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,10,41,17260,ENSMUSG00000005583,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6508,cg23584000,-0.00000993,0.0000132,-0.750504223,0.453520343,loss,ns,0.0000132,0.0000225,0.586374259,0.558050755,pos,ns,0.003719112,0.006588059,0.564523173,0.572806367,pos,ns,0.241992163,-0.0000975,0.000226563,-0.430242197,0.667318413,neg,ns,0.784749616,Zfp536,Zfp536_Intron,7,37565162,37565211,37565162,37565163,50,+,CGATTTATAAAGAAGAATTCATTGGTTAAGATCTGAAAAAATAGTTTCTC,"Intron (Zfp536-211/Zfp536, intron 1 of 3)",7,37318024,37568390,250367,2,Zfp536-211,3179,Zfp536-211;Zfp536-202;Zfp536-201;Zfp536-203;Zfp536-206;Zfp536-209;Zfp536-208,Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,73,112,243937,ENSMUSG00000043456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26240,cg15746488,0.0000726,0.0000179,4.058055582,0.0000627,gain,ns,-0.0000178,0.0000304,-0.586262468,0.558125771,neg,ns,0.021378967,0.008898584,2.40251332,0.016870569,pos,ns,1.77287027,-0.000624306,0.000306022,-2.040071829,0.042190448,neg,ns,0.23969796,Vps13d,Vps13d_Intron,4,145000036,145000085,145000036,145000037,50,+,CGAGCTGTATTACACGCCTTAATGATATGGTTCAACTGTCGGTCAGGCTT,"Intron (Vps13d-202/Vps13d, intron 67 of 69)",4,144972622,145195005,222384,2,Vps13d-202,194920,Vps13d-202;Vps13d-203;Vps13d-201;Vps13d-210;Vps13d-205,Vps13d;Vps13d;Vps13d;Vps13d;Vps13d,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,10,230895,ENSMUSG00000020220,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3563,cg09638448,0.0000293,0.00000346,8.474226208,9.71E-16,gain,yes,-0.00000345,0.00000588,-0.586117059,0.558223352,neg,ns,0.000389887,0.001723376,0.226234181,0.82116838,pos,ns,0.085567782,0.000136481,0.0000593,2.302820235,0.021950905,pos,ns,0.050579939,Gm13418,Gm13418_Intergenic_downstream,2,24521703,24521752,24521703,24521704,50,+,CGGCGCTCACGGAGCTCTTTAAGATAAATGAGCAAAATTAAGAGACTCAC,Distal Intergenic,2,24494068,24495011,944,1,Gm13418-201,27635,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,433410,NA,mapped to different genes,2,24521623,24521713,91,*,91,12,0.747252747,0.952048823,0.131868132,5.70E-11,CpGisland,TRUE,U3,Pr-B
343,cg26899365,-0.00000807,0.00000456,-1.769140843,0.077853568,loss,ns,-0.00000454,0.00000775,-0.586079386,0.558248635,neg,ns,-0.002113495,0.002270511,-0.930845437,0.352657846,neg,ns,0.45264645,-0.00014267,0.0000781,-1.827170887,0.068635399,neg,ns,0.800652361,Arid1b,Arid1b_Intron,17,5212510,5212559,5212510,5212511,50,+,CGCAGAGTGCTTTAATTGCTGAGAAGAGAGGTTAAGCTGAACGAACGGAT,"Intron (Arid1b-201/Arid1b, intron 4 of 18)",17,4994939,5343505,348567,1,Arid1b-201,217571,Arid1b-201;Arid1b-207;Arid1b-202;Arid1b-203,Arid1b;Arid1b;Arid1b;Arid1b,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,11,239985,ENSMUSG00000069729,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20827,cg02201138,-0.0000502,0.00000861,-5.832120015,1.38E-08,loss,yes,-0.00000857,0.0000146,-0.586077745,0.558249736,neg,ns,0.023609655,0.00428604,5.508500804,7.61E-08,pos,ns,7.118542185,-0.001023183,0.000147397,-6.94170096,2.27E-11,neg,yes,0.692328597,Apbb1,Apbb1_fiveUTR,7,105565586,105565635,105565634,105565635,50,+,AGCGAAACACGTGGCACTTGAGCATCTGGGTCAGCTTATCACGAGCTACG,5' UTR,7,105558483,105581653,23171,2,Apbb1-217,16018,Apbb1-217;Apbb1-209;Apbb1-215;Apbb1-212;Apbb1-219;Apbb1-201;Apbb1-208;Apbb1-214;Apbb1-213;Apbb1-205;Apbb1-221;Apbb1-218;Apbb1-202;Apbb1-210;Apbb1-207;Apbb1-206;Apbb1-220;Apbb1-204;Apbb1-203;Apbb1-216,Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1,0;0;0;0;0;0;0;0;0;0;0;-81;0;0;3328;3630;3636;3638;0;3035,TRUE,FALSE,FALSE,TRUE,TRUE,TRUE,TRUE,FALSE,FALSE,fiveUTR,6,8,11785,ENSMUSG00000037032,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20459,cg22321187,0.000103788,0.00000819,12.67419869,6.05E-30,gain,yes,-0.00000815,0.0000139,-0.585948138,0.558336722,neg,ns,0.010194796,0.004075701,2.501360106,0.012887181,pos,ns,1.88984208,0.0000653,0.000140163,0.465886475,0.641623926,pos,ns,0.056289386,Hoxc4,Hoxc4_Intergenic_downstream,15,103061662,103061711,103061662,103061663,50,-,CGCGCCAGCCTCCGCAGCCGCCTTTGTACACGTGATTTATGACTTCAATC,Distal Intergenic,15,103034395,103036852,2458,1,Hoxc4-201,27316,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,32,91,15423,ENSMUSG00000075394,mapped to different genes,15,103061537,103061809,273,*,273,19,0.586080586,0.8125,0.06959707,7.69E-12,CpGisland,TRUE,U13,Hc-P
14918,cg13368121,-0.00000152,0.00000164,-0.928630916,0.353802887,loss,ns,0.00000163,0.00000278,0.585807206,0.558431316,pos,ns,0.000529141,0.000814366,0.649758251,0.516329559,pos,ns,0.287073011,0.0000219,0.000028,0.781383272,0.435173439,pos,ns,0.965881209,Fam222b,Fam222b_Exon,11,78154556,78154605,78154556,78154557,50,+,CGTCCCCACACCAATGCCTTCATGTGTGGTCAATCCCATGGAGCACACCC,"Exon (Fam222b-201/Fam222b, exon 3 of 3)",11,78094660,78156700,62041,1,Fam222b-201,59896,Fam222b-201;Fam222b-202;Fam222b-203;Traf4-203;Traf4-201,Fam222b;Fam222b;Fam222b;Traf4;Traf4,0;0;0;10984;10984,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,21,216971,ENSMUSG00000037750,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13044,cg21020878,0.00000063,0.00000156,0.402966044,0.687250967,gain,ns,0.00000156,0.00000265,0.585795115,0.558439432,pos,ns,-0.00020344,0.000777722,-0.261584762,0.793815306,neg,ns,0.100280532,0.0000266,0.0000267,0.995704777,0.320170174,pos,ns,0.966052873,Chd3,Chd3_Exon,11,69345475,69345524,69345523,69345524,50,-,GTGGGGTGAGGCTCCGTGCCCTTGCTGGCCAGCCGGCTGAGGATGCTGCG,Promoter (<=1kb),11,69343273,69346019,2747,2,Chd3-205,495,Chd3-205;Chd3-203;Chd3-202;Chd3-211;Chd3-201;Chd3-204;Chd3-208;Rnf227-201;Rnf227-203;Rnf227-202,Chd3;Chd3;Chd3;Chd3;Chd3;Chd3;Chd3;Rnf227;Rnf227;Rnf227,0;0;0;0;0;0;0;5014;4704;4666,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,22,26,216848,ENSMUSG00000018474,conserved gene but different region,11,69345353,69345644,292,*,292,17,0.609589041,0.656613757,0.058219178,1.94E-09,CpGisland,TRUE,U10,Tr-S
237,cg22852890,0.000000278,0.000000399,0.696974575,0.486341028,gain,ns,-0.000000397,0.000000678,-0.585731848,0.5584819,neg,ns,-0.000324926,0.00019867,-1.635506516,0.102957815,neg,ns,0.987340683,0.00000667,0.00000683,0.975630573,0.330008269,pos,ns,0.991075374,Gm21992,Gm21992_threeUTR,19,4801763,4801812,4801811,4801812,50,+,GCGGTAATCAGAGAGCTCGGCTAAACGCCGGTCGGAACCATACCTAGTCG,3' UTR,19,4742913,4811612,68700,2,Gm21992-203,9800,Gm21992-203;Gm21992-206;Gm21992-204;Gm21992-201;Gm21992-205;Gm21992-202;Rbm14-201;Rbm14-202;Rbm14-203,Gm21992;Gm21992;Gm21992;Gm21992;Gm21992;Gm21992;Rbm14;Rbm14;Rbm14,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,21,48,102902673,ENSMUSG00000096370,mapped to different genes,19,4801605,4801812,208,*,208,24,0.586538462,1.371428571,0.115384615,3.42E-20,CpGisland,TRUE,U10,Tr-S
26635,cg21603943,-0.000000619,0.000000767,-0.806808793,0.4203952,loss,ns,-0.000000763,0.0000013,-0.585537787,0.558612173,neg,ns,0.0000319,0.000381893,0.083466491,0.933534492,pos,ns,0.029869631,-1.33E-08,0.0000131,-0.001009143,0.999195469,neg,ns,0.023814111,Hmgb1,Hmgb1_fiveUTR,5,149051416,149051465,149051416,149051417,50,+,CGTCCGGTCTGAAGTTTCTCCGAGTAAACAAGGATGAGGGACAAAAGCCA,5' UTR,5,149046702,149053040,6339,2,Hmgb1-201,1575,Hmgb1-201;Hmgb1-203;Hmgb1-202;Hmgb1-210;Hmgb1-209;Hmgb1-208;Hmgb1-207;Hmgb1-206;Hmgb1-205;Hmgb1-204,Hmgb1;Hmgb1;Hmgb1;Hmgb1;Hmgb1;Hmgb1;Hmgb1;Hmgb1;Hmgb1;Hmgb1,0;-116;0;0;-969;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,3,15289,ENSMUSG00000066551,mapped to different genes,5,149051234,149051509,276,*,276,26,0.608695652,1.017583664,0.094202899,2.09E-19,CpGisland,TRUE,U1,Pr-A
26701,cg00648405,-0.0000127,0.00000651,-1.949096701,0.052185574,loss,ns,-0.00000647,0.0000111,-0.585430745,0.558684036,neg,ns,0.000026,0.003239592,0.008012346,0.993612295,pos,ns,0.002783043,-0.0000992,0.000111409,-0.890299058,0.373995735,neg,ns,0.903536174,Camta1,Camta1_Intron,4,151380350,151380399,151380398,151380399,50,-,GGTTGTACCCTTTTCATTTCCTATCCACAGGACAATATTTTAGCCATGCG,"Intron (Camta1-211/Camta1, intron 5 of 24)",4,150917322,151861669,944348,2,Camta1-211,481270,Camta1-211;Camta1-202;Camta1-201,Camta1;Camta1;Camta1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,22,100072,ENSMUSG00000014592,conserved gene and region,4,151380398,151380464,67,*,67,7,0.671641791,1.010775862,0.104477612,0.00000982,CpGisland,TRUE,U15,NS
2838,cg12769242,0.0000433,0.00000815,5.316328081,0.000000203,gain,yes,0.0000081,0.0000138,0.585399497,0.558705016,pos,ns,0.008825486,0.004054489,2.176719719,0.030255855,pos,ns,1.519190573,-0.000176202,0.000139434,-1.263701679,0.207286589,neg,ns,0.185031088,Ccdc178,Ccdc178_Intron,18,21940598,21940647,21940646,21940647,50,+,CATAGGAAACTGATGGTGTCTGCAGTTTGCATTGTTTACTTTATCCTCCG,"Intron (Ccdc178-204/Ccdc178, intron 21 of 23)",18,21810893,22171442,360550,2,Ccdc178-204,230795,Ccdc178-204;Ccdc178-201;Ccdc178-202,Ccdc178;Ccdc178;Ccdc178,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,19,21,70950,ENSMUSG00000024306,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24244,cg18653670,-0.0000276,0.00000754,-3.660923029,0.000295349,loss,ns,0.0000075,0.0000128,0.585395333,0.558707812,pos,ns,-0.00295516,0.003754739,-0.78704806,0.431855022,neg,ns,0.364662026,0.000230608,0.000129125,1.785922807,0.075089099,pos,ns,0.124277209,Gm12902,Gm12902_Intergenic_downstream,4,124189591,124189640,124189591,124189592,50,+,CGAGGCTGCTTTAATCAGAGAAAGGTGATGAAAAGATTAGAGGGTATGAT,Distal Intergenic,4,123926234,123926555,322,1,Gm12902-201,263357,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,34,34,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22674,cg06106580,-0.00000441,0.00000336,-1.311271346,0.190736511,loss,ns,-0.00000335,0.00000571,-0.585383546,0.558715725,neg,ns,0.001446169,0.001674159,0.863817944,0.388355768,pos,ns,0.410770241,-0.000153086,0.0000576,-2.658930799,0.008245995,neg,ns,0.929428492,Sox6,Sox6_Intron,7,115661085,115661134,115661133,115661134,50,+,GTGGCTCAAATTCTGAATTTTATTTGCCAATAGGTTGAGCTACATGCTCG,"Intron (Sox6-210/Sox6, intron 6 of 15)",7,115470872,116031047,560176,2,Sox6-210,369913,Sox6-210;Sox6-201;Sox6-202;Sox6-204;Sox6-205;Sox6-203;Sox6-212;Sox6-206;Sox6-209;Sox6-214;Sox6-207;Sox6-213,Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,37,57,20679,ENSMUSG00000051910,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18214,cg02830039,0.00000715,0.00000307,2.326540529,0.020634007,gain,ns,-0.00000306,0.00000522,-0.585282735,0.558783412,neg,ns,-0.003259685,0.001529924,-2.130618769,0.033907433,neg,ns,1.469705091,0.0000724,0.0000526,1.375473591,0.169977746,pos,ns,0.863493603,Celf3,Celf3_Exon,3,94490439,94490488,94490439,94490440,50,-,CGGACCCCTGCTCCGGGCCCCTGTAAGTTGCATGGAACGAGCGTGTTGTC,"Exon (Celf3-210/Celf3, exon 8 of 9)",3,94478296,94492188,13893,1,Celf3-208,12143,Celf3-208;Celf3-204;Celf3-215;Celf3-201;Celf3-213;Celf3-212;Celf3-207;Celf3-206;Celf3-211;Celf3-205;Celf3-209;Celf3-210;Celf3-202;Celf3-203,Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Celf3,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,12,78784,ENSMUSG00000028137,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24215,cg06989214,-0.0000162,0.00000305,-5.300977798,0.000000219,loss,yes,0.00000304,0.00000519,0.585255374,0.558801784,pos,ns,-0.000727272,0.001520455,-0.47832526,0.632755872,neg,ns,0.198763816,-0.00000107,0.0000523,-0.020514443,0.983646188,neg,ns,0.913006762,Rsrc2,Rsrc2_fiveUTR,5,123742797,123742846,123742845,123742846,50,-,TATTATTTTGCTATCTGAGTCTGCAGCGTCTTCAGTTCAGTCTCTTCGCG,Promoter (<=1kb),5,123728724,123742833,14110,2,Rsrc2-218,0,Rsrc2-201;Rsrc2-202;Rsrc2-218;Rsrc2-219;Rsrc2-208;Rsrc2-210;Rsrc2-212;Rsrc2-213;Rsrc2-217;Rsrc2-222;Rsrc2-203;Rsrc2-205;Rsrc2-204;Rsrc2-215;Rsrc2-220;Rsrc2-209;Rsrc2-207;Rsrc2-206;Rsrc2-216;Rsrc2-223;Rsrc2-214;Rsrc2-211,Rsrc2;Rsrc2;Rsrc2;Rsrc2;Rsrc2;Rsrc2;Rsrc2;Rsrc2;Rsrc2;Rsrc2;Rsrc2;Rsrc2;Rsrc2;Rsrc2;Rsrc2;Rsrc2;Rsrc2;Rsrc2;Rsrc2;Rsrc2;Rsrc2;Rsrc2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;-1049;0;0;0;0;0;0;2384,TRUE,FALSE,TRUE,TRUE,TRUE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,1,208606,ENSMUSG00000029422,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9996,cg20200185,-0.000000958,0.00000175,-0.548060189,0.584044998,loss,ns,-0.00000174,0.00000297,-0.585214597,0.558829163,neg,ns,0.000442851,0.000870272,0.508864683,0.611209052,pos,ns,0.213810223,-0.0000547,0.0000299,-1.826979933,0.068664186,neg,ns,0.96299143,Satb1,Satb1_Intron,17,51803682,51803731,51803730,51803731,50,+,CTGATTGTTCCGATTAGTTAATTACTTTATACAACACATCTGCTGTATCG,"Intron (Satb1-208/Satb1, intron 4 of 10)",17,51736187,51832672,96486,2,Satb1-208,28941,Satb1-208;Satb1-213;Satb1-204;Satb1-214;Satb1-203;Satb1-211;Satb1-207;Satb1-206;Satb1-202;Satb1-201;Satb1-209,Satb1;Satb1;Satb1;Satb1;Satb1;Satb1;Satb1;Satb1;Satb1;Satb1;Satb1,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,28,36,20230,ENSMUSG00000023927,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10911,cg03591776,0.0000865,0.0000134,6.455712183,4.15E-10,gain,yes,-0.0000133,0.0000228,-0.58520616,0.558834828,neg,ns,0.014076854,0.006672531,2.10967238,0.035687878,pos,ns,1.447479278,-0.000210932,0.000229468,-0.919224473,0.358692861,neg,ns,0.257479728,Pitx1,Pitx1_Intron,13,55848921,55848970,55848969,55848970,50,-,AATTGACACTGGGCTTGAGTGGTTCAAAGGTTATTGGCACAAAGCTGTCG,"Intron (Gm47071-202/Gm47071-202, intron 2 of 5)",13,55828474,55836192,7719,2,Pitx1-202,-12778,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,5,18740,ENSMUSG00000021506,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3544,cg25860812,0.00000252,0.00000123,2.048763074,0.041327005,gain,ns,-0.00000122,0.00000209,-0.585187476,0.558847374,neg,ns,-0.0000778,0.000611649,-0.127264932,0.898813226,neg,ns,0.046330546,0.0000232,0.000021,1.103176575,0.270806132,pos,ns,0.040714662,Fam122a,Fam122a_Exon,19,24476764,24476813,24476812,24476813,50,-,GGTCCAAGAACACTTGGTCTAATGCAATTGATGGGGCTCTGGCTTCTCCG,Promoter (<=1kb),19,24476502,24477356,855,2,Fam122a-201,543,Fam122a-201;Pip5k1b-202;Pip5k1b-201;Pip5k1b-205;Pip5k1b-204,Fam122a;Pip5k1b;Pip5k1b;Pip5k1b;Pip5k1b,0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,68034,ENSMUSG00000074922,conserved gene and region,19,24476812,24476988,177,*,177,15,0.587570622,1.027874565,0.084745763,1.11E-10,CpGisland,TRUE,U1,Pr-A
26406,cg09757430,-0.0000115,0.00000755,-1.517243444,0.130224313,loss,ns,0.00000751,0.0000128,0.585047163,0.558941595,pos,ns,-0.006283484,0.003760154,-1.671071053,0.095716803,neg,ns,1.019011815,0.000211753,0.000129311,1.6375465,0.102530962,pos,ns,0.173639402,Gsx1,Gsx1_Intergenic_downstream,5,147223810,147223859,147223810,147223811,50,-,CGCACAGACATCTCTCCAAGGTGACCCATTTGGCACAGCTGAAATAAATA,Distal Intergenic,5,147188696,147190947,2252,1,Gsx1-201,35163,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,12,20,14842,ENSMUSG00000053129,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
8015,cg25050453,0.0000644,0.00000597,10.79727893,2.79E-23,gain,yes,-0.00000593,0.0000101,-0.584997517,0.558974934,neg,ns,0.008018177,0.002969474,2.700200946,0.007310403,pos,ns,2.136058693,-0.0000923,0.00010212,-0.904241698,0.366569416,neg,ns,0.115173207,Pax2,Pax2_Intergenic_upstream,19,44684157,44684206,44684157,44684158,50,+,CGCGGCCATTACGGGAAAGTTAGTGTGAAACATGTTAAATTATCCCCAAA,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-71839,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,19,44684083,44684169,87,*,87,12,0.643678161,1.338461539,0.137931035,3.16E-11,CpGisland,TRUE,U13,Hc-P
15402,cg11284212,-0.00000542,0.00000414,-1.309999129,0.19116602,loss,ns,0.00000412,0.00000704,0.584953024,0.559004814,pos,ns,-0.003423566,0.002061058,-1.661071884,0.097709989,neg,ns,1.010061036,-0.0000127,0.0000709,-0.178953411,0.858091183,neg,ns,0.885464842,Gria2,Gria2_Exon,3,80702539,80702588,80702587,80702588,50,-,GATGGGAGACACCATCCTCTCTACAGTCAGGAAGGCAGCTAAGTTAGCCG,"Exon (Gria2-201/Gria2, exon 12 of 16)",3,80681450,80802835,121386,2,Gria2-201,100247,Gria2-201;Gria2-202;Gria2-203;Gria2-206;Gria2-204;Gria2-207,Gria2;Gria2;Gria2;Gria2;Gria2;Gria2,0;0;0;0;100062;100136,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,19,14800,ENSMUSG00000033981,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
682,cg21351544,0.000016,0.00000215,7.456663734,8.96E-13,gain,yes,-0.00000213,0.00000365,-0.584932304,0.559018729,neg,ns,0.010348707,0.001069077,9.6800403,1.55E-19,pos,yes,18.81000077,-0.000137784,0.0000368,-3.747658044,0.00021286,neg,ns,0.95677787,Tab2,Tab2_fiveUTR,10,7924740,7924789,7924788,7924789,50,-,AGGTCATGTAAAACCTGAAAATCAATTTGGTGGCTTCCTTGGGCCATTCG,5' UTR,10,7905653,7956230,50578,2,Tab2-204,31441,Tab2-204;Tab2-205;Tab2-201,Tab2;Tab2;Tab2,0;0;-480,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,3,68652,ENSMUSG00000015755,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2085,cg20671604,0.00000348,0.00000686,0.506728752,0.61270538,gain,ns,-0.00000681,0.0000117,-0.584872478,0.559058907,neg,ns,0.019489449,0.003413217,5.709994109,2.65E-08,pos,ns,7.577458358,-0.000434181,0.00011738,-3.698927093,0.000256059,neg,ns,0.0800514,A930004D18Rik,A930004D18Rik_Intron,2,18029143,18029192,18029191,18029192,50,-,TTGCAGAAAATTAATCAAACTTGAATCCTTGTTGCATAGCAAGAATTTCG,"Intron (A930004D18Rik-201/A930004D18Rik, intron 1 of 1)",2,18025193,18037737,12545,2,A930004D18Rik-201,8545,A930004D18Rik-201;A930004D18Rik-202;A930004D18Rik-203,A930004D18Rik;A930004D18Rik;A930004D18Rik,0;-383;-272,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,10,77940,ENSMUSG00000054057,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13343,cg14392375,-0.00000623,0.00000283,-2.20076842,0.028489489,loss,ns,-0.00000281,0.00000481,-0.584768501,0.55912874,neg,ns,0.000449266,0.001408334,0.319005296,0.749937338,pos,ns,0.124975023,-0.0000493,0.0000484,-1.017210143,0.30984669,neg,ns,0.939902465,Trim9,Trim9_Exon,12,70250968,70251017,70250968,70250969,50,+,CGAGTTGTTGTGCATGAACCAGCTCCGGTTATTGTCCACATACATTGCCC,"Exon (Trim9-202/Trim9, exon 12 of 14)",12,70244533,70347350,102818,2,Trim9-202,96333,Trim9-202;Trim9-201;Trim9-211;Trim9-209;Trim9-206;Trim9-212,Trim9;Trim9;Trim9;Trim9;Trim9;Trim9,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,7,94090,ENSMUSG00000021071,conserved gene and region,12,70250939,70251238,300,*,300,16,0.543333333,0.722891566,0.053333333,2.23E-08,CpGisland,TRUE,U11,Tr-P
2993,cg04620668,-0.000000413,0.00000121,-0.342455123,0.732240484,loss,ns,0.0000012,0.00000205,0.584658646,0.559202526,pos,ns,0.000522024,0.00059986,0.870243684,0.384840603,pos,ns,0.414719113,-0.0000298,0.0000206,-1.44342358,0.14991094,neg,ns,0.969172742,Lrmda,Lrmda_Intron,14,22268530,22268579,22268530,22268531,50,+,CGTAACAAATGGGTATCAGTGGCCCATGAAATAATCAATGCCACTAATCC,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,248818,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206,Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7751,cg20483374,-0.00000827,0.0000115,-0.719282799,0.472508558,loss,ns,0.0000114,0.0000195,0.584566806,0.559264215,pos,ns,0.002673809,0.005722036,0.467282878,0.640625786,pos,ns,0.193395585,-0.000179445,0.00019678,-0.911906553,0.362526496,neg,ns,0.705629751,C1qtnf5,C1qtnf5_fiveUTR,9,44107220,44107269,44107220,44107221,50,+,CGACACCACGAGTTATTTCCCAGCTATTTCCCGGTCCGGGAGCTCTTGGC,Promoter (<=1kb),9,44107245,44109187,1943,1,C1qtnf5-202,0,C1qtnf5-202;C1qtnf5-204;C1qtnf5-203;C1qtnf5-205;C1qtnf5-201;C1qtnf5-207;C1qtnf5-208;C1qtnf5-206;Gm49380-201;Gm49380-202;Mfrp-201;Mfrp-203;Mfrp-205;Mfrp-202;Mfrp-204;Mfrp-206;Rnf26-202;Rnf26-203;Rnf26-204;Rnf26-201;Rnf26-206;Rnf26-205,C1qtnf5;C1qtnf5;C1qtnf5;C1qtnf5;C1qtnf5;C1qtnf5;C1qtnf5;C1qtnf5;Gm49380;Gm49380;Mfrp;Mfrp;Mfrp;Mfrp;Mfrp;Mfrp;Rnf26;Rnf26;Rnf26;Rnf26;Rnf26;Rnf26,0;0;-5;-40;-45;-52;-106;-246;0;0;0;5482;0;0;5432;2044;0;0;-4132;6235;6204;5765,TRUE,FALSE,TRUE,TRUE,TRUE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,1,235312,ENSMUSG00000079592,conserved gene and region,9,44107209,44107229,21,*,21,5,0.857142857,1.3125,0.238095238,0.0000059,CpGisland,TRUE,NA,NRS
14931,cg04209192,0.00000521,0.00000767,0.679345771,0.497425717,gain,ns,0.00000762,0.000013,0.58442508,0.559359419,pos,ns,0.000512663,0.003819118,0.134236034,0.89330304,pos,ns,0.049001188,0.0000175,0.000131339,0.133073588,0.894221523,pos,ns,0.102857125,Nr2f1,Nr2f1_Exon,13,78181661,78181710,78181709,78181710,50,+,TGGTCTCAGCATGGAGCGTAATTGCAACAAAGTGCCGCCGAGTAAAATCG,"Exon (3110006O06Rik-201/3110006O06Rik-201, exon 2 of 2)",13,78189872,78190443,572,2,Nr2f1-204,8733,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,25,55,13865,ENSMUSG00000069171,conserved gene and region,13,78181696,78181859,164,*,164,10,0.475609756,1.114130435,0.06097561,0.00000612,CpGisland,TRUE,U13,Hc-P
7336,cg24000533,0.0000091,0.00000399,2.282149347,0.023157834,gain,ns,-0.00000396,0.00000678,-0.58422112,0.559496443,neg,ns,-0.005452301,0.001985339,-2.746281535,0.006379726,neg,ns,2.195198002,0.000110769,0.0000683,1.622384818,0.105737489,pos,ns,0.903128632,Fam131b,Fam131b_Exon,6,42318181,42318230,42318229,42318230,50,-,TCCTCATCAAAGGACTGCACACCTGAGGATGTGACGTCAGACACCTTCCG,"Exon (Fam131b-201/Fam131b, exon 6 of 6)",6,42315312,42324640,9329,2,Fam131b-201,6410,Clcn1-201;Clcn1-205;Clcn1-204;Clcn1-206;Clcn1-210;Clcn1-208;Clcn1-207;Clcn1-202;Clcn1-209;Fam131b-201;Fam131b-203;Fam131b-202,Clcn1;Clcn1;Clcn1;Clcn1;Clcn1;Clcn1;Clcn1;Clcn1;Clcn1;Fam131b;Fam131b;Fam131b,0;0;0;0;0;0;0;0;5689;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,76156,ENSMUSG00000029861,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17803,cg13660279,0.000165121,0.0000159,10.35331183,9.04E-22,gain,yes,0.0000158,0.0000271,0.584126846,0.559559783,pos,ns,-0.000556105,0.007937794,-0.070057836,0.944192797,neg,ns,0.024939317,0.000167652,0.00027298,0.614154654,0.539563579,pos,ns,0.403083396,Irx3,Irx3_Exon,8,91799426,91799475,91799474,91799475,50,+,TGGAAAGCTGTCTTGAGTAACTTTTTCTCCACTTCCAAGGCACTACAGCG,"Exon (Irx3-201/Irx3, exon 3 of 4)",8,91798525,91801915,3391,2,Irx3-201,2440,Irx3-201;Irx3-202,Irx3;Irx3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,16,36,16373,ENSMUSG00000031734,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
14933,cg13776863,0.0000532,0.00000354,15.04654158,8.55E-39,gain,yes,0.00000351,0.00000601,0.584000821,0.559644461,pos,ns,0.00969807,0.001760349,5.509173831,7.58E-08,pos,ns,7.120054113,-0.000116634,0.0000605,-1.926622973,0.054940574,neg,ns,0.078070262,Nr2f1,Nr2f1_Exon,13,78181739,78181788,78181739,78181740,50,-,CGCGAACCATCTGGTGTGTATTAAGAGTGGTGCTGTAAATATTGCTGAGA,"Exon (3110006O06Rik-201/3110006O06Rik-201, exon 2 of 2)",13,78189872,78190443,572,2,Nr2f1-204,8704,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,25,55,13865,ENSMUSG00000069171,conserved gene and region,13,78181696,78181859,164,*,164,10,0.475609756,1.114130435,0.06097561,0.00000612,CpGisland,TRUE,U13,Hc-P
12012,cg05621378,-0.0000058,0.00000319,-1.81841605,0.069965477,loss,ns,-0.00000316,0.00000542,-0.583870989,0.559731704,neg,ns,-0.001400169,0.001587724,-0.881872074,0.378529253,neg,ns,0.421900552,-0.000127561,0.0000546,-2.336202423,0.020117764,neg,ns,0.022168658,Anp32a,Anp32a_fiveUTR,9,62341391,62341440,62341439,62341440,50,-,GCGGAGCTGGTTGAGCCTTCAAAGTCCTAAAACGCGCGGCCGTGGGTTCG,Promoter (<=1kb),9,62341293,62377701,36409,1,Anp32a-207,98,Anp32a-207;Anp32a-201;Anp32a-203;Anp32a-205;Anp32a-210;Anp32a-208;Anp32a-202,Anp32a;Anp32a;Anp32a;Anp32a;Anp32a;Anp32a;Anp32a,0;0;0;0;-1024;-2623;-3359,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,9,11737,ENSMUSG00000032249,mapped to different genes,9,62340767,62341614,848,*,848,72,0.632075472,0.85274934,0.08490566,2.37E-49,CpGisland,TRUE,U1,Pr-A
27609,cg04256768,-0.00000136,0.00000278,-0.491027943,0.623754111,loss,ns,-0.00000275,0.00000471,-0.583821877,0.559764707,neg,ns,0.000864718,0.001381327,0.626005378,0.531772048,pos,ns,0.274274494,-0.000111954,0.0000475,-2.356745416,0.019057637,neg,ns,0.946895425,Vangl2,Vangl2_fiveUTR,1,172013108,172013157,172013156,172013157,50,+,GGCCCGACTTGTAGGAATAGCCCGAGTACTGGGACTCGGTGTCCATGGCG,5' UTR,1,172000960,172027295,26336,2,Vangl2-201,14138,Vangl2-201;Vangl2-202;Vangl2-203;Vangl2-205;Vangl2-206;Vangl2-204,Vangl2;Vangl2;Vangl2;Vangl2;Vangl2;Vangl2,0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,6,93840,ENSMUSG00000026556,conserved gene and region,1,172013064,172013193,130,*,130,14,0.669230769,0.965005302,0.107692308,1.85E-11,CpGisland,TRUE,U11,Tr-P
5754,cg09786757,0.0000407,0.00000478,8.52526187,6.80E-16,gain,yes,0.00000474,0.00000812,0.583814365,0.559769756,pos,ns,0.006749098,0.002377714,2.838481505,0.004832007,pos,ns,2.315872433,-0.0000478,0.0000818,-0.584392243,0.559381478,neg,ns,0.14510449,Kctd15,Kctd15_Promoter,7,34653357,34653406,34653357,34653358,50,-,CGGGGACAAAGTTAAATCAAGAGGCAGACACTTGGAGACCACAGATGGGA,Promoter (<=1kb),7,34639014,34654398,15385,2,Kctd15-202,992,Kctd15-202;Kctd15-203;Kctd15-201;Kctd15-206;Kctd15-208;Kctd15-204;Kctd15-205;Kctd15-207,Kctd15;Kctd15;Kctd15;Kctd15;Kctd15;Kctd15;Kctd15;Kctd15,0;0;0;-4613;0;0;0;3326,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,7,25,233107,ENSMUSG00000030499,conserved gene but different region,7,34653185,34653358,174,*,174,20,0.75862069,0.836538462,0.114942529,7.61E-17,CpGisland,TRUE,U3,Pr-B
27961,cg15989225,-0.0000322,0.00000794,-4.0572555,0.0000629,loss,ns,0.00000788,0.0000135,0.583740551,0.559819361,pos,ns,0.0009133,0.003953148,0.231031007,0.817443118,pos,ns,0.087542458,-0.000117291,0.000135948,-0.862764057,0.388934161,neg,ns,0.776030769,Gm21362,Gm21362_Intergenic_downstream,1,193896446,193896495,193896494,193896495,50,-,AGAAATTCTGTCCTGCTGGCAAGAGACGCTCACTTCTGACTTTAATTCCG,Distal Intergenic,1,193867009,193867936,928,1,Gm21362-201,29486,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,5,100861968,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26016,cg15932297,0.0000445,0.00000598,7.437128368,1.02E-12,gain,yes,0.00000593,0.0000102,0.583720562,0.559832795,pos,ns,0.011286743,0.002976338,3.792158402,0.000179504,pos,ns,3.745925402,-0.000196401,0.000102356,-1.918798155,0.055927963,neg,ns,0.08118275,Gm2574,Gm2574_Intergenic_downstream,3,143101146,143101195,143101146,143101147,50,+,CGGCTTGATGAAATTTGCTGTTATTGTGCCCATTTTTAGCAACATCTTTT,Distal Intergenic,3,142962611,142963612,1002,1,Gm2574-201,138535,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,19,100040053,NA,mapped to different genes,3,143100781,143101147,367,*,367,52,0.732970027,1.085304823,0.141689373,1.32E-48,CpGisland,TRUE,U3,Pr-B
4243,cg06171459,-0.0000381,0.00000938,-4.064634302,0.000061,loss,ns,0.0000093,0.0000159,0.583648593,0.559881162,pos,ns,-0.005864816,0.004668003,-1.256386579,0.209921792,neg,ns,0.677942474,-0.000207792,0.000160532,-1.294396166,0.196491984,neg,ns,0.791053836,Gm7729,Gm7729_Intergenic_downstream,18,27867054,27867103,27867054,27867055,50,-,CGATGTGCTGACCTATTTAAAAATATAACTCAGGTGCCTGGCGAACCATG,Distal Intergenic,18,27598644,27599756,1113,1,Gm7729-201,268459,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,22,665646,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20005,cg04501234,-0.000000683,0.00000189,-0.361992823,0.717604024,loss,ns,0.00000187,0.00000321,0.583602078,0.559912425,pos,ns,0.000367216,0.000939565,0.390836276,0.69618672,pos,ns,0.157274265,-0.000000058,0.0000323,-0.001794169,0.998569615,neg,ns,0.95338517,Nhsl2,Nhsl2_Exon,X,102076198,102076247,102076198,102076199,50,-,CGTTGTTTAACACAGAGACAGCCGTGAACCCCAAGTCCACCCTGAGGCGG,"Exon (Nhsl2-202/Nhsl2, exon 3 of 3)",20,101849385,102076276,226892,1,Nhsl2-202,226813,Nhsl2-202;Nhsl2-201;Nhsl2-207;Nhsl2-206;Nhsl2-205;Nhsl2-204;Rtl5-202;Rtl5-204,Nhsl2;Nhsl2;Nhsl2;Nhsl2;Nhsl2;Nhsl2;Rtl5;Rtl5,0;0;0;0;0;0;-4894;-4894,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,7,100042480,ENSMUSG00000079481,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11126,cg04616318,-0.00000798,0.00000826,-0.96625045,0.334672063,loss,ns,-0.00000819,0.000014,-0.583446022,0.560017315,neg,ns,-0.007436849,0.00411105,-1.808990192,0.071421189,neg,ns,1.146172922,0.000018,0.000141379,0.127258506,0.898818307,pos,ns,0.862523368,Lingo1,Lingo1_Intron,9,56689719,56689768,56689719,56689720,50,+,CGGCTTCTATTAGGCTAAATATCTCTGTATAATGGGGAATTATCCTCTGA,"Intron (Lingo1-206/Lingo1, intron 3 of 6)",9,56618475,56796138,177664,2,Lingo1-206,106370,Lingo1-201;Lingo1-206;Lingo1-205;Lingo1-207;Lingo1-204;Lingo1-208,Lingo1;Lingo1;Lingo1;Lingo1;Lingo1;Lingo1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,25,235402,ENSMUSG00000049556,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9072,cg23748504,0.0000021,0.0000022,0.953239024,0.34121165,gain,ns,0.00000218,0.00000374,0.583298896,0.560116212,pos,ns,-0.001435072,0.001095693,-1.309739288,0.191253832,neg,ns,0.718389854,0.0000443,0.0000377,1.175209846,0.240812617,pos,ns,0.955065504,Nova1,Nova1_Intron,12,46766424,46766473,46766424,46766425,50,+,CGTTCCACCTCAGAAGTGGCTGCAATTCGGTGGTGGGTGAAGTGACTCCT,"Intron (Nova1-201/Nova1, intron 2 of 4)",12,46694517,46818929,124413,2,Nova1-201,52456,Nova1-201;Nova1-203;Nova1-202;Nova1-205,Nova1;Nova1;Nova1;Nova1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,24,664883,ENSMUSG00000021047,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15430,cg12838692,-0.0000154,0.00000721,-2.135268112,0.033522754,loss,ns,0.00000714,0.0000122,0.583255222,0.56014557,pos,ns,0.001332538,0.00358651,0.371541734,0.71048789,pos,ns,0.14844332,-0.0000077,0.00012334,-0.062462622,0.950234681,neg,ns,0.076929339,Arrdc3,Arrdc3_Exon,13,80883841,80883890,80883841,80883842,50,-,CGCCGGCTCCAATACTGCCTATACACAGAATTACACTGAAGAAGTAGAGT,Promoter (<=1kb),13,80883384,80889643,6260,1,Arrdc3-202,457,Arrdc3-202;Arrdc3-203;Arrdc3-201;Arrdc3-205,Arrdc3;Arrdc3;Arrdc3;Arrdc3,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,8,105171,ENSMUSG00000074794,mapped to different genes,13,80883715,80883845,131,*,131,9,0.465648855,1.348970252,0.06870229,0.00000851,CpGisland,TRUE,U1,Pr-A
9435,cg24140160,-0.0000122,0.0000159,-0.768492684,0.442779575,loss,ns,-0.0000158,0.000027,-0.583251084,0.560148352,neg,ns,0.017917544,0.007918357,2.262785623,0.024340561,pos,ns,1.61366941,-0.000952802,0.000272312,-3.498938307,0.000535523,neg,ns,0.181895836,Zbtb16,Zbtb16_Intron,9,48737634,48737683,48737634,48737635,50,+,CGATCATAAACTCTCTGGAATGCTGGCAGAACATCCAGACCTGCCGGCAG,"Intron (Zbtb16-201/Zbtb16, intron 3 of 6)",9,48654297,48835945,181649,2,Zbtb16-201,98262,Zbtb16-201;Zbtb16-202,Zbtb16;Zbtb16,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,37,235320,ENSMUSG00000066687,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
1977,cg23304986,-0.00000863,0.00000361,-2.389286529,0.017478672,loss,ns,-0.00000358,0.00000614,-0.582966211,0.56033987,neg,ns,0.001432157,0.001798504,0.796304703,0.426464334,pos,ns,0.370117284,-0.00018635,0.0000619,-3.012907829,0.002800855,neg,ns,0.889972215,Ap2s1,Ap2s1_Exon,7,16748954,16749003,16748954,16748955,50,-,CGAGAGACCAGCCAGACGAAGGTGCTGAAACAGCTGCTGATGCTACAGTC,"Exon (Ap2s1-201/Ap2s1, exon 5 of 5)",7,16738410,16749294,10885,1,Ap2s1-201,10544,Ap2s1-201;Ap2s1-204;Ap2s1-203;Ap2s1-205;Ap2s1-202,Ap2s1;Ap2s1;Ap2s1;Ap2s1;Ap2s1,0;0;10482;10416;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,Exon,1,1,232910,ENSMUSG00000008036,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8580,cg18024395,-0.000000951,0.00000164,-0.579736682,0.562513287,loss,ns,-0.00000162,0.00000279,-0.582879579,0.560398118,neg,ns,0.000592996,0.000816408,0.726347363,0.468173914,pos,ns,0.329592788,0.00000577,0.0000281,0.205442902,0.837360944,pos,ns,0.958075713,Snrnp70,Snrnp70_threeUTR,7,45383103,45383152,45383151,45383152,50,+,TGATACAAACCCTTATACCAACCATACACTGAGGTGTTGTAAGGGGAGCG,3' UTR,7,45376453,45395742,19290,2,Snrnp70-201,12590,Snrnp70-201;Snrnp70-207;Snrnp70-216;Snrnp70-215;Snrnp70-214;Snrnp70-204;Snrnp70-209;Snrnp70-213;Snrnp70-206;Snrnp70-205;Snrnp70-217;Snrnp70-203;Snrnp70-202;Snrnp70-212;Snrnp70-211,Snrnp70;Snrnp70;Snrnp70;Snrnp70;Snrnp70;Snrnp70;Snrnp70;Snrnp70;Snrnp70;Snrnp70;Snrnp70;Snrnp70;Snrnp70;Snrnp70;Snrnp70,0;0;0;0;0;0;-1786;0;11647;4618;12020;12042;11567;12557;9626,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,8,20637,ENSMUSG00000063511,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15205,cg11891578,0.00000857,0.00000148,5.787178793,1.75E-08,gain,yes,-0.00000147,0.00000252,-0.582825525,0.560434464,neg,ns,0.000947556,0.00073737,1.285048271,0.199734702,pos,ns,0.699546474,-0.00000812,0.0000254,-0.320351349,0.748917824,neg,ns,0.04620131,Rhcg,Rhcg_Exon,7,79592459,79592508,79592459,79592460,50,+,CGACGTTTAATTAACATGCTCCTCTTGGCAGCTGCTGACAAGTTCCAGAA,"Exon (Gm45169-201/Gm45169-201, exon 1 of 2)",7,79593369,79594929,1561,2,Rhcg-203,2421,Rhcg-201;Rhcg-203,Rhcg;Rhcg,25149;2421,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,9,56315,ENSMUSG00000030549,conserved gene but different region,7,79592197,79592463,267,*,267,21,0.685393258,0.717007673,0.078651685,4.16E-14,CpGisland,TRUE,U3,Pr-B
26786,cg12774550,-0.0000155,0.0000169,-0.917969673,0.359348387,loss,ns,0.0000167,0.0000287,0.582779609,0.560465339,pos,ns,0.005335712,0.008396206,0.635490831,0.525577163,pos,ns,0.279363513,0.000115735,0.000288745,0.400821053,0.68882799,pos,ns,0.755586284,Csnk2a1,Csnk2a1_Exon,2,152258689,152258738,152258689,152258690,50,-,CGTTAACAGACTATGATATTCGATTTTACATGTATGAGATTCTGAAGGTA,"Exon (Csnk2a1-201/Csnk2a1, exon 6 of 13)",2,152226839,152281852,55014,1,Csnk2a1-201,31850,Csnk2a1-201;Csnk2a1-204;Csnk2a1-202;Csnk2a1-203,Csnk2a1;Csnk2a1;Csnk2a1;Csnk2a1,0;0;0;31781,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,12995,ENSMUSG00000074698,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24477,cg19701703,-0.0000066,0.00000304,-2.174722752,0.030406695,loss,ns,0.00000301,0.00000516,0.582774774,0.56046859,pos,ns,0.001859999,0.001511565,1.230511983,0.219438321,pos,ns,0.658687529,-0.0000503,0.000052,-0.967303032,0.334146603,neg,ns,0.922852802,Atxn2l,Atxn2l_threeUTR,7,126492581,126492630,126492581,126492582,50,-,CGACTGTGGCTTCTGCCCACCCTACATACTTCACAGACAGGTGCAGGTCG,3' UTR,7,126491708,126503437,11730,2,Atxn2l-201,10807,Atxn2l-201;Atxn2l-203;Atxn2l-206;Atxn2l-205;Atxn2l-202;Tufm-201;Tufm-202;Tufm-203;Tufm-204;Tufm-205;Tufm-206,Atxn2l;Atxn2l;Atxn2l;Atxn2l;Atxn2l;Tufm;Tufm;Tufm;Tufm;Tufm;Tufm,0;0;0;0;0;5220;5203;4952;3967;3895;3210,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,8,13,233871,ENSMUSG00000032637,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14606,cg17255582,-0.00000362,0.00000189,-1.914196078,0.056515589,loss,ns,0.00000187,0.00000321,0.582711474,0.560511155,pos,ns,0.000889382,0.000941764,0.944378072,0.34571193,pos,ns,0.461285633,-0.0000385,0.0000324,-1.188252437,0.235643501,neg,ns,0.947882097,Mctp1,Mctp1_Intron,13,76825013,76825062,76825013,76825014,50,+,CGGCCATGTTGAATCCCATGATAGTTAATTTTTCCTGACAGACTTGATCC,"Intron (Mctp1-204/Mctp1, intron 12 of 20)",13,76384535,77031810,647276,1,Mctp1-204,440478,Mctp1-204;Mctp1-201;Mctp1-206;Mctp1-208;Mctp1-203;Mctp1-207,Mctp1;Mctp1;Mctp1;Mctp1;Mctp1;Mctp1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,20,78771,ENSMUSG00000021596,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1190,cg07341770,0.0000555,0.000011,5.058370194,0.000000725,gain,yes,-0.0000109,0.0000186,-0.582647351,0.560554276,neg,ns,0.023137225,0.00545637,4.240405873,0.0000295,pos,ns,4.530425137,-0.000638513,0.000187644,-3.402785646,0.00075461,neg,ns,0.26208071,Gm14512,Gm14512_Intergenic_downstream,X,12004615,12004664,12004615,12004616,50,-,CGCCTCCAGAATAACGAGCCGAAAACATGTGTACTGTAAATAAAGCCTGT,Distal Intergenic,20,11984468,11984697,230,1,Gm14512-201,20196,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,22,22,,NA,mapped to different genes,X,12004514,12004635,122,*,122,10,0.606557377,0.924242424,0.081967213,0.000000423,CpGisland,TRUE,U5,En-Sd
22618,cg27020869,0.00000878,0.0000182,0.481688509,0.630367105,gain,ns,-0.000018,0.0000309,-0.582376427,0.560736479,neg,ns,0.020838108,0.00906709,2.298213424,0.022215018,pos,ns,1.653353332,-0.000831867,0.000311816,-2.667810454,0.008036054,neg,ns,0.424290362,Msi1,Msi1_Exon,5,115436553,115436602,115436601,115436602,50,-,AATCTGATCCAGCAGCTGTGATTGGAGGCCGCCTGCCCCCGGGGCCGGCG,"Exon (4930430O22Rik-202/4930430O22Rik-202, exon 1 of 1)",5,115429599,115455698,26100,1,Msi1-208,6954,Msi1-208;Msi1-209;Msi1-201;Msi1-203;Msi1-206;Msi1-205;Msi1-207;Msi1-204;Msi1-202,Msi1;Msi1;Msi1;Msi1;Msi1;Msi1;Msi1;Msi1;Msi1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,14,17690,ENSMUSG00000054256,conserved gene but different region,5,115436495,115436692,198,*,198,21,0.666666667,0.956521739,0.106060606,6.93E-17,CpGisland,TRUE,U3,Pr-B
25208,cg21454760,-0.00000113,0.00001,-0.112114133,0.910805472,loss,ns,0.00000994,0.0000171,0.582309561,0.560781453,pos,ns,0.039429855,0.005000416,7.885314168,5.40E-14,pos,yes,13.26754671,-0.000941815,0.000171964,-5.476817615,8.96E-08,neg,yes,0.25601587,Arid1a,Arid1a_Exon,4,133695574,133695623,133695574,133695575,50,-,CGATCTTGGGCAATGCTTGATTGGTTCATGGAAGGATGCATGATGCTGTC,"Exon (Arid1a-202/Arid1a, exon 6 of 20)",4,133679008,133753611,74604,2,Arid1a-202,57988,Arid1a-202;Arid1a-205;Arid1a-201;Arid1a-203,Arid1a;Arid1a;Arid1a;Arid1a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,13,31,93760,ENSMUSG00000007880,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25612,cg06650573,0.000028,0.0000048,5.843710929,1.29E-08,gain,yes,-0.00000475,0.00000815,-0.582257616,0.560816392,neg,ns,0.001913251,0.002388446,0.801044143,0.423719611,pos,ns,0.372921435,0.00000664,0.0000821,0.080824843,0.935633406,pos,ns,0.103695689,Ebf3,Ebf3_Promoter,7,137316644,137316693,137316644,137316645,50,-,CGATCCTGCCCCAGAAAGAAAAGGGGTTTTAAACCTTTTTGACAACAAAT,Promoter (2-3kb),7,137193673,137314445,120773,2,Ebf3-204,-2248,Ebf3-204;Ebf3-201;Ebf3-202;Ebf3-203;Ebf3-208;Ebf3-206,Ebf3;Ebf3;Ebf3;Ebf3;Ebf3;Ebf3,0;0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,9,84,13593,ENSMUSG00000010476,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
7028,cg08659076,0.000014,0.00000315,4.451610518,0.0000119,gain,ns,-0.00000312,0.00000536,-0.582248162,0.560822751,neg,ns,0.003188743,0.001569922,2.031147643,0.043092945,pos,ns,1.365593824,-0.000084,0.000054,-1.555152808,0.120929969,neg,ns,0.054067929,Tfap2a,Tfap2a_Intron,13,40704212,40704261,40704212,40704213,50,+,CGGGTGTGAAATTACCATGTTTATTAATTGAGCCAGACATTAGCTTTACC,"Intron (Gm9979-201/Gm9979-201, intron 1 of 1)",13,40716724,40728944,12221,2,Tfap2a-209,24683,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,57,21418,ENSMUSG00000021359,mapped to different genes,13,40703950,40704213,264,*,264,30,0.674242424,1.001897533,0.113636364,6.28E-25,CpGisland,TRUE,U13,Hc-P
23902,cg09211712,-0.000000187,0.00000122,-0.153466736,0.87813007,loss,ns,-0.0000012,0.00000207,-0.582236042,0.560830903,neg,ns,0.000365894,0.000605545,0.604239081,0.546126649,pos,ns,0.262706631,0.0000191,0.0000208,0.917422711,0.359634364,pos,ns,0.9687873,Csnk1d,Csnk1d_Exon,11,120983291,120983340,120983339,120983340,50,+,TTTGACACATTCAAGCTTGATGGCAACCTCTTCTCCTGCAGCAATGTCCG,"Exon (Csnk1d-209/Csnk1d, exon 2 of 9)",11,120958990,120991330,32341,2,Csnk1d-209,7990,Csnk1d-209;Csnk1d-202;Csnk1d-201;Csnk1d-207;Csnk1d-206;Csnk1d-208,Csnk1d;Csnk1d;Csnk1d;Csnk1d;Csnk1d;Csnk1d,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,5,104318,ENSMUSG00000025162,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26735,cg13313422,-0.00000241,0.00000235,-1.027160671,0.305145609,loss,ns,0.00000232,0.00000398,0.582142114,0.560894084,pos,ns,0.003096229,0.001167416,2.652207641,0.008408216,pos,ns,2.075296126,-0.00010378,0.0000401,-2.584972357,0.010195308,neg,ns,0.941742137,Huwe1,Huwe1_Exon,X,151922754,151922803,151922754,151922755,50,+,CGGGAGCTCCAGCTGCCTTCTATGTCCATGTTGACATCCAAGACATCTAC,"Exon (Huwe1-201/Huwe1, exon 71 of 83)",20,151803327,151935417,132091,1,Huwe1-201,119427,Huwe1-201;Huwe1-202;Huwe1-209;Huwe1-205;Huwe1-213,Huwe1;Huwe1;Huwe1;Huwe1;Huwe1,0;0;1472;0;-1455,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,22,28,59026,ENSMUSG00000025261,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3650,cg01131263,0.00000106,0.00000163,0.648996058,0.516821432,gain,ns,-0.00000161,0.00000276,-0.582048331,0.560957172,neg,ns,-0.00023836,0.000809491,-0.294457011,0.768605785,neg,ns,0.114296351,0.0000104,0.0000278,0.372269554,0.709946527,pos,ns,0.016432337,Erfl,Erfl_Promoter,7,24944951,24945000,24944999,24945000,50,+,CTGATCAAATTTGAAAACAGATGTCGAATCGCGACTCTAAATAAGGTTCG,Promoter (<=1kb),7,24927445,24944494,17050,2,Erfl-201,-457,Erfl-201,Erfl,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,29,36,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
18677,cg14033937,-0.00000049,0.0000066,-0.074147928,0.940940501,loss,ns,-0.00000653,0.0000112,-0.581820561,0.561110405,neg,ns,-0.00149288,0.00328734,-0.454130013,0.650053041,neg,ns,0.187051206,-0.000231525,0.000113051,-2.047961958,0.041405958,neg,ns,0.687791467,Dscam,Dscam_Exon,16,96709226,96709275,96709226,96709227,50,+,CGAGTTCAGCTGAGGGGAAACATCTTTGGTTCTCTGAGCAGAATCCCAGG,"Exon (Dscam-201/Dscam, exon 15 of 33)",16,96590840,97170752,579913,2,Dscam-201,461477,Dscam-201,Dscam,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,12,13508,ENSMUSG00000050272,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13891,cg21753703,0.00000964,0.00000502,1.921280668,0.055613106,gain,ns,0.00000496,0.00000852,0.581817974,0.561112146,pos,ns,0.000444355,0.002497037,0.177952915,0.85887618,pos,ns,0.066069442,0.0000297,0.0000859,0.345792545,0.729733174,pos,ns,0.065519988,Irx4,Irx4_Intergenic_downstream,13,73270950,73270999,73270950,73270951,50,-,CGAGCATCAGCCAAGGTAATTTGAAGTGAAATTTTCATTTTGACAGTAAA,Downstream (1-2kb),13,73260497,73269608,9112,1,Irx4-201,10502,Irx4-202;Irx4-201,Irx4;Irx4,0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,6,7,50916,ENSMUSG00000021604,conserved gene and region,13,73270840,73270951,112,*,112,11,0.616071429,1.035294118,0.098214286,0.000000013,CpGisland,TRUE,U13,Hc-P
21049,cg16934835,-0.0000105,0.00000243,-4.325375573,0.0000206,loss,ns,-0.0000024,0.00000413,-0.581743551,0.561162218,neg,ns,0.002684266,0.00120995,2.218494307,0.027245337,pos,ns,1.564707819,-0.0000982,0.0000416,-2.360263191,0.018881108,neg,ns,0.942493903,Pla2g15,Pla2g15_Exon,8,106160583,106160632,106160631,106160632,50,+,TCCTATTTCCACACCATGGTGGAGAGCCTTGTGGGCTGGGGCTACACACG,"Exon (Pla2g15-204/Pla2g15, exon 4 of 6)",8,106150399,106164712,14314,1,Pla2g15-204,10184,Pla2g15-204;Pla2g15-201;Pla2g15-203;Pla2g15-202,Pla2g15;Pla2g15;Pla2g15;Pla2g15,0;0;10077;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,192654,ENSMUSG00000031903,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22428,cg03901956,-0.00000217,0.00000354,-0.613524025,0.539979805,loss,ns,0.0000035,0.00000601,0.581539552,0.561299482,pos,ns,0.007215322,0.001762186,4.094529011,0.000054,pos,ns,4.267399127,-0.000173791,0.0000606,-2.867764359,0.004417201,neg,ns,0.927148172,Pde3b,Pde3b_Exon,7,114494597,114494646,114494597,114494598,50,-,CGGAGTATTAGTAGCTTAATGGGTGCTTTCTCAGGTTCCTGTAGGCCAAA,"Exon (Pde3b-201/Pde3b, exon 3 of 16)",7,114415281,114539251,123971,1,Pde3b-201,79316,Pde3b-201,Pde3b,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,18576,ENSMUSG00000030671,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21005,cg11939852,0.00000511,0.00000407,1.254979532,0.210431452,gain,ns,-0.00000402,0.00000692,-0.58139091,0.56139951,neg,ns,-0.003600443,0.002025904,-1.777203059,0.076515268,neg,ns,1.116251893,0.000215973,0.0000697,3.099905523,0.00211348,pos,ns,0.897005344,Gm19566,Gm19566_Intergenic_downstream,5,105974926,105974975,105974974,105974975,50,-,ATGGTTTAAATCTTTAAACAGAGCGTAACAGCCGGAGTACATCCAGACCG,Distal Intergenic,5,105980573,105981182,610,2,Gm19566-201,6256,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,8,100503127,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4665,cg00051782,-0.00000619,0.00000158,-3.916879039,0.000110378,loss,ns,0.00000156,0.00000268,0.58137693,0.561408918,pos,ns,0.000461615,0.000786402,0.5869965,0.557633303,pos,ns,0.253651297,-0.00000969,0.000027,-0.35841494,0.720276763,neg,ns,0.052445206,Hes1,Hes1_Intergenic_downstream,16,30070294,30070343,30070294,30070295,50,+,CGGCTGCTTTCTGGCAGGAAATGAATAGCTCCCAGATGAGCTCAGGCAAC,Distal Intergenic,16,30066338,30067319,982,1,Hes1-204,3956,Hes1-202;Hes1-201;Hes1-203;Hes1-204,Hes1;Hes1;Hes1;Hes1,0;0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,20,15205,ENSMUSG00000022528,conserved gene and region,16,30070092,30070295,204,*,204,26,0.789215686,0.818518519,0.12745098,4.29E-23,CpGisland,TRUE,U1,Pr-A
12772,cg18980049,0.0000232,0.0000048,4.844672176,0.00000201,gain,ns,0.00000474,0.00000815,0.581366628,0.561415851,pos,ns,0.007443707,0.002386987,3.118453266,0.001988694,pos,ns,2.701432098,-0.000188184,0.0000821,-2.292458465,0.022548854,neg,ns,0.079703814,Gnal,Gnal_Exon,18,67133891,67133940,67133891,67133892,50,-,CGAGGCCAACAAAAAGATCGAGAAGCAGTTGCAGAAAGAGCGCCTGGCTT,"Exon (Gnal-204/Gnal, exon 2 of 13)",18,67088216,67226792,138577,1,Gnal-201,45675,Gnal-201;Gnal-208;Gnal-203;Gnal-204;Gnal-206;Gnal-202;Gnal-205,Gnal;Gnal;Gnal;Gnal;Gnal;Gnal;Gnal,0;0;0;0;887;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,Exon,1,1,14680,ENSMUSG00000024524,conserved gene and region,18,67133855,67134169,315,*,315,26,0.615873016,0.871925902,0.082539683,6.95E-18,CpGisland,TRUE,U3,Pr-B
10764,cg06687832,-0.0000525,0.00000956,-5.491019582,8.33E-08,loss,yes,0.00000944,0.0000162,0.581364945,0.561416984,pos,ns,-0.002286989,0.004757067,-0.480755994,0.631029042,neg,ns,0.199950653,-0.0000668,0.000163595,-0.408257622,0.683366391,neg,ns,0.589765113,Gm12508,Gm12508_Intron,4,55215962,55216011,55215962,55215963,50,+,CGAGCTGACATTATTACTATCACGCCCAGTGATTAAGAAGAAAATAAAGG,"Intron (Gm12514-202/Gm12514-202, intron 1 of 2)",4,55254740,55255219,480,1,Gm12508-201,-38729,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,670211,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22448,cg05688640,0.0000967,0.0000151,6.408154687,5.47E-10,gain,yes,-0.0000149,0.0000256,-0.581360826,0.561419755,neg,ns,0.034383672,0.007511507,4.577466272,0.00000682,pos,ns,5.16618804,0.000308435,0.00025832,1.194002921,0.233389674,pos,ns,0.50191393,Fam222a,Fam222a_Intron,5,114578442,114578491,114578442,114578443,50,-,CGTTTGCTTGAAGCAAATGTCAGGCGCCAAGTTGTGCTTTGTAAACGCTC,"Intron (Fam222a-201/Fam222a, intron 1 of 2)",5,114568016,114613220,45205,1,Fam222a-201,10426,Fam222a-201;Fam222a-202,Fam222a;Fam222a,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,16,433940,ENSMUSG00000041930,conserved gene and region,5,114578372,114578579,208,*,208,14,0.538461539,0.943310658,0.067307692,1.14E-08,CpGisland,TRUE,U11,Tr-P
16106,cg06336360,0.00000186,0.00000121,1.542116028,0.124065548,gain,ns,0.00000119,0.00000205,0.581257887,0.561489033,pos,ns,0.00053112,0.000600903,0.883868494,0.377452165,pos,ns,0.423138079,-0.0000117,0.0000207,-0.564705706,0.57268234,neg,ns,0.966979223,Aatf,Aatf_Intergenic_downstream,11,84412289,84412338,84412337,84412338,50,-,ACCAGGCACAATAACTAAATTAGCAATTCAACAAAATAATTGGAAATGCG,Distal Intergenic,11,84442509,84449533,7025,2,Aatf-203,37244,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,10,56321,ENSMUSG00000018697,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20037,cg18942539,-0.0000148,0.00000271,-5.473662936,9.11E-08,loss,yes,0.00000267,0.0000046,0.58116622,0.561550729,pos,ns,-0.002185551,0.001346652,-1.622952395,0.105616029,neg,ns,0.976270166,0.0000737,0.0000463,1.591308454,0.112559365,pos,ns,0.978120694,Atxn7l3,Atxn7l3_fiveUTR,11,102295001,102295050,102295049,102295050,50,-,TGTAAACTCTTGTGGAGACGGCGCTCTGACTGCTCATAGCACAGCGGGCG,Promoter (<=1kb),11,102289300,102295312,6013,2,Atxn7l3-203,262,Atxn7l3-206;Atxn7l3-205;Atxn7l3-204;Atxn7l3-203;Atxn7l3-201;Atxn7l3-202,Atxn7l3;Atxn7l3;Atxn7l3;Atxn7l3;Atxn7l3;Atxn7l3,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,7,217218,ENSMUSG00000059995,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
9846,cg04597648,-0.00002,0.0000121,-1.651879392,0.099571651,loss,ns,0.0000119,0.0000205,0.580951749,0.561695089,pos,ns,0.007695153,0.006018666,1.278547981,0.202012646,pos,ns,0.694621443,-0.000386268,0.000206981,-1.866197577,0.062957857,neg,ns,0.694149195,Trps1,Trps1_Intergenic_upstream,15,51106171,51106220,51106219,51106220,50,-,AATTTAGATCCAGACACTGCTAAGTCAAATACATCAATGTTGGGAAAACG,Distal Intergenic,15,50846176,50890463,44288,2,Trps1-208,-215757,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,36,83925,ENSMUSG00000038679,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15184,cg08479954,-0.00000118,0.00000176,-0.672595688,0.501705573,loss,ns,0.00000173,0.00000298,0.580937019,0.561705004,pos,ns,-0.000507235,0.0008742,-0.580227256,0.562182877,neg,ns,0.250122387,0.0000291,0.0000301,0.967776229,0.333910553,pos,ns,0.949025316,Ddx17,Ddx17_threeUTR,15,79532962,79533011,79533010,79533011,50,-,CTCTGTTTGTTACCAGACCGATGCACACTCCCTCCTCCTTTGGGAAACCG,3' UTR,15,79527736,79546741,19006,2,Ddx17-201,13730,Ddx17-201;Ddx17-203;Ddx17-204;Ddx17-202,Ddx17;Ddx17;Ddx17;Ddx17,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,9,14,67040,ENSMUSG00000055065,conserved gene and region,15,79532980,79533149,170,*,170,13,0.594117647,0.886126704,0.076470588,9.43E-09,CpGisland,TRUE,U10,Tr-S
208,cg24479895,0.00006,0.000017,3.538101624,0.000464683,gain,ns,-0.0000167,0.0000288,-0.580678646,0.56187894,neg,ns,0.027122071,0.008441799,3.212830769,0.001452571,pos,ns,2.83786272,-0.000720762,0.000290313,-2.48270774,0.013567705,neg,ns,0.440466758,Gm21992,Gm21992_threeUTR,19,4765401,4765450,4765401,4765402,50,-,CGCGGTCCCCTTTGCCGGGATGTTTCCATTGCTTCATGTTTCAGTAAACA,3' UTR,19,4742913,4811612,68700,2,Gm21992-203,46162,Gm21992-203;Rbm4b-207;Rbm4b-208;Rbm4b-209;Rbm4b-204;Rbm4b-205;Rbm4b-202;Rbm4b-201;Rbm4b-203;Rbm4b-210;Rbm4b-206,Gm21992;Rbm4b;Rbm4b;Rbm4b;Rbm4b;Rbm4b;Rbm4b;Rbm4b;Rbm4b;Rbm4b;Rbm4b,0;0;0;0;8858;8837;8836;0;8820;8496;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,21,48,102902673,ENSMUSG00000096370,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20789,cg24287163,-0.0000103,0.00000408,-2.530651432,0.01187964,loss,ns,0.00000403,0.00000693,0.580648726,0.561899083,pos,ns,-0.000845391,0.002031619,-0.416116742,0.677612509,neg,ns,0.169018585,-0.0000819,0.0000699,-1.171563172,0.242272139,neg,ns,0.907405266,Them7,Them7_Intron,2,105301617,105301666,105301665,105301666,50,-,AACCAGATGCTGAAGTACCAACAATATTTCAACATGACTGTGCTGCCTCG,"Intron (Them7-201/Them7, intron 3 of 3)",2,105224320,105379796,155477,1,Them7-201,77297,Them7-201;Them7-202,Them7;Them7,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,7,74088,ENSMUSG00000055312,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3860,cg10365571,0.000000746,0.00000672,0.110943434,0.911732996,gain,ns,-0.00000663,0.0000114,-0.580629811,0.561911818,neg,ns,0.000836387,0.003345156,0.250029285,0.802730311,pos,ns,0.095430338,-0.0000654,0.00011504,-0.568548649,0.570074108,neg,ns,0.789806181,Celf4,Celf4_Intron,18,25612398,25612447,25612446,25612447,50,+,ACAACATGACACTCCCTGGACAGAACACATTCATTATCTTATTCACCACG,"Intron (Celf4-202/Celf4, intron 2 of 12)",18,25477632,25753983,276352,2,Celf4-202,141536,Celf4-202;Celf4-201;Celf4-203;Celf4-207;Celf4-206;Celf4-209,Celf4;Celf4;Celf4;Celf4;Celf4;Celf4,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,59,108013,ENSMUSG00000024268,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20872,cg10254629,0.00000295,0.00000236,1.246826291,0.213402428,gain,ns,-0.00000233,0.00000401,-0.580555487,0.561961859,neg,ns,-0.001625593,0.001176141,-1.382141626,0.167923272,neg,ns,0.774889111,-0.00000721,0.0000404,-0.178370582,0.858548459,neg,ns,0.040563648,Pax6,Pax6_fiveUTR,2,105675543,105675592,105675591,105675592,50,-,ATGACAGAGGTCAGGCTTCGCTAATGGGCCAGTGAGGAGCGGTGGAGGCG,5' UTR,2,105668900,105697364,28465,1,Pax6-206,6643,Pax6-206;Pax6-207;Pax6-210;Pax6-214;Pax6-208;Pax6-217;Pax6-226;Pax6-220;Pax6-202;Pax6-205;Pax6-225;Pax6-204;Pax6-201;Pax6-203;Pax6-224;Pax6-219,Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,15,78,18508,ENSMUSG00000027168,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
19436,cg25437009,0.00000204,0.00000201,1.014364815,0.311199743,gain,ns,-0.00000198,0.00000342,-0.580540617,0.561971871,neg,ns,-0.000952474,0.001001094,-0.951433672,0.342125478,neg,ns,0.465814583,0.00000405,0.0000344,0.117750909,0.906341284,pos,ns,0.964202574,Prpf40b,Prpf40b_threeUTR,15,99305582,99305631,99305630,99305631,50,+,CTACTACTACAATGCTGACGACAAGCAGTCCGTGTGGGAGAAGCCCAGCG,3' UTR,15,99295087,99305965,10879,1,Prpf40b-205,10495,Prpf40b-205;Prpf40b-214;Prpf40b-206;Prpf40b-209;Prpf40b-211;Prpf40b-212;Prpf40b-208;Prpf40b-201;Prpf40b-202;Prpf40b-210;Prpf40b-215,Prpf40b;Prpf40b;Prpf40b;Prpf40b;Prpf40b;Prpf40b;Prpf40b;Prpf40b;Prpf40b;Prpf40b;Prpf40b,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,10,54614,ENSMUSG00000023007,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22477,cg26647900,0.0000579,0.000011,5.252652476,0.000000279,gain,yes,-0.0000109,0.0000187,-0.580354249,0.562097359,neg,ns,0.02417612,0.005489671,4.403928832,0.0000147,pos,ns,4.834011248,-0.000770934,0.000188789,-4.083568841,0.0000565,neg,ns,0.400552718,Ankrd13a,Ankrd13a_Exon,5,114795690,114795739,114795690,114795691,50,+,CGGATTCTGGGGCTGGAGGACAGATAAAGCAGAAGTTGTTAATGGTTACG,"Exon (Ankrd13a-201/Ankrd13a, exon 7 of 15)",5,114774677,114805822,31146,1,Ankrd13a-201,21013,Ankrd13a-201;Ankrd13a-205;Ankrd13a-204;Ankrd13a-202;Ankrd13a-203;Ankrd13a-206,Ankrd13a;Ankrd13a;Ankrd13a;Ankrd13a;Ankrd13a;Ankrd13a,0;0;0;-4;-3718;-3832,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,68420,ENSMUSG00000041870,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7176,cg02327977,-0.00000165,0.00000194,-0.850201445,0.395869262,loss,ns,0.00000191,0.0000033,0.5803483,0.562101365,pos,ns,-0.00136599,0.000966325,-1.413591807,0.158485167,neg,ns,0.800011379,0.0000324,0.0000332,0.975047936,0.330296719,pos,ns,0.954955906,Lcor,Lcor_Exon,19,41559195,41559244,41559195,41559196,50,-,CGGAGGGGCCAGATGTTTCTGTAAAGATTGAATTAGATCCCCAGGGAGAG,"Exon (Lcor-201/Lcor, exon 8 of 8)",19,41482637,41562261,79625,1,Lcor-201,76558,Lcor-201;Lcor-204;Lcor-206;Lcor-202;Lcor-205,Lcor;Lcor;Lcor;Lcor;Lcor,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,Exon,14,25,212391,ENSMUSG00000025019,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4548,cg16677654,-0.00000911,0.00000282,-3.236486922,0.001341009,loss,ns,0.00000277,0.00000478,0.580116787,0.562257271,pos,ns,-0.000580675,0.001401089,-0.414445462,0.678834533,neg,ns,0.168236073,-0.0000874,0.0000482,-1.813348368,0.07074505,neg,ns,0.952937434,Gm7917,Gm7917_Intergenic_downstream,18,29641136,29641185,29641136,29641137,50,-,CGAGCGATTTTACAGTGTCTGATATAAGCTGGAGATTTTATGATCTATAA,Distal Intergenic,18,29657054,29657596,543,2,Gm7917-201,16460,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,8,666073,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9463,cg11913107,-0.0000069,0.00000362,-1.906894002,0.057458564,loss,ns,-0.00000357,0.00000615,-0.579987864,0.5623441,neg,ns,-0.004678055,0.001801291,-2.597056002,0.009851018,neg,ns,2.006518885,0.0000136,0.0000619,0.219401133,0.826481978,pos,ns,0.927055719,Gm46453,Gm46453_Intron,14,48813255,48813304,48813303,48813304,50,-,GAACAAAACTACTCGCCAAATTTGTTGGGCATCTGTTCCCACTAGAGGCG,"Intron (Otx2os1-206/Otx2os1-206, intron 2 of 4)",14,48834168,48834534,367,2,Gm46453-201,21279,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,9,108168159,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4944,cg15349127,-0.0000147,0.00000308,-4.790788842,0.00000258,loss,ns,-0.00000303,0.00000523,-0.579802367,0.562469042,neg,ns,-0.000937279,0.001531547,-0.611981689,0.540998452,neg,ns,0.266803978,0.00000951,0.0000527,0.180590944,0.856806667,pos,ns,0.968777773,Rnf217,Rnf217_Exon,10,31505826,31505875,31505826,31505827,50,-,CGATATTTGCATCCAAATATACTGAGGTTTGATGTGTGGTCTCCAAAAAA,"Exon (Rnf217-201/Rnf217, exon 4 of 6)",10,31493193,31609184,115992,2,Rnf217-201,103309,Rnf217-201,Rnf217,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,268291,ENSMUSG00000063760,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3577,cg18476993,-0.0000339,0.00000758,-4.469296642,0.000011,loss,ns,0.00000746,0.0000129,0.579771309,0.562489962,pos,ns,-0.004879339,0.003772015,-1.293563195,0.196779354,neg,ns,0.70602047,-0.000184027,0.000129719,-1.418656701,0.157003692,neg,ns,0.729086821,Chpf2,Chpf2_Exon,5,24592154,24592203,24592202,24592203,50,-,GGTGATGGATGTTTTCCTCCGGTTCTCAGGGCTCCACCTCTTTCGGGCCG,"Exon (Chpf2-201/Chpf2, exon 4 of 5)",5,24586741,24594395,7655,1,Chpf2-201,5413,Chpf2-201;Chpf2-206;Chpf2-202;Chpf2-204;Chpf2-203;Chpf2-205;Smarcd3-205;Smarcd3-201;Smarcd3-208;Smarcd3-207;Smarcd3-203;Smarcd3-206;Smarcd3-204;Smarcd3-202,Chpf2;Chpf2;Chpf2;Chpf2;Chpf2;Chpf2;Smarcd3;Smarcd3;Smarcd3;Smarcd3;Smarcd3;Smarcd3;Smarcd3;Smarcd3,0;5412;0;5382;0;-1284;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,100910,ENSMUSG00000038181,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8680,cg08566450,-0.00000487,0.00000527,-0.923135583,0.356654492,loss,ns,0.00000519,0.00000895,0.579758771,0.562498408,pos,ns,-0.005059659,0.002623409,-1.928658044,0.054686181,neg,ns,1.262122403,0.000206531,0.0000902,2.289222965,0.022738458,pos,ns,0.905545731,Poll,Poll_Intergenic_downstream,19,45540306,45540355,45540354,45540355,50,-,TACAGTAAATTAAAAATATGAATCACTTCTCCCCACTGCCTCCCCAAACG,Distal Intergenic,19,45552275,45560531,8257,2,Poll-201,20225,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,16,56626,ENSMUSG00000025218,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15552,cg19501726,0.0000076,0.00000575,1.321338458,0.187362929,gain,ns,-0.00000566,0.00000977,-0.579654051,0.56256895,neg,ns,-0.0000134,0.002861437,-0.004696799,0.996255532,neg,ns,0.001629254,-0.000164445,0.0000984,-1.671115238,0.095708069,neg,ns,0.738718055,Slc8a1,Slc8a1_Promoter,17,81738467,81738516,81738515,81738516,50,+,CTTTCGCTTCCATACATGGATCTGTTCCCAACAGTAACTCCAAGCTGTCG,Promoter (<=1kb),17,81388524,81738377,349854,2,Slc8a1-202,-90,Slc8a1-206;Slc8a1-202,Slc8a1;Slc8a1,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,3,20541,ENSMUSG00000054640,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19421,cg04361508,0.0000227,0.0000063,3.595206593,0.000376981,gain,ns,0.00000621,0.0000107,0.579508907,0.56266673,pos,ns,0.001171113,0.003137106,0.373310053,0.709172842,pos,ns,0.149247904,0.0000906,0.000107885,0.839949199,0.401584191,pos,ns,0.77272503,Efnb1,Efnb1_Intergenic_downstream,X,99291689,99291738,99291737,99291738,50,-,CTGACAGGACAGTGATTAGTCTTCAGGGAGCAAAGGCGAAGACTCTGCCG,Distal Intergenic,20,99138131,99147230,9100,1,Efnb1-202,153607,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,14,13641,ENSMUSG00000031217,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13619,cg19000179,0.000139161,0.00000983,14.15090021,2.05E-35,gain,yes,-0.00000968,0.0000167,-0.579448464,0.562707452,neg,ns,0.010828637,0.004894518,2.212401047,0.027667593,pos,ns,1.558028616,0.000286275,0.000168322,1.700756453,0.089991564,pos,ns,0.255148312,Dlx1,Dlx1_Intron,2,71536195,71536244,71536243,71536244,50,+,AGCAATTTTTTCGCCCAGGGAATCTTTTTGCATTAACAAAAGAGATAACG,"Intron (Dlx1as-204/Dlx1as-204, intron 1 of 1)",2,71530780,71532689,1910,1,Dlx1-206,5415,Dlx1-201;Dlx1-204;Dlx1-203;Dlx1-206,Dlx1;Dlx1;Dlx1;Dlx1,0;0;0;5415,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,36,13390,ENSMUSG00000041911,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
20189,cg18542862,0.00000215,0.00000502,0.428676563,0.668456337,gain,ns,-0.00000494,0.00000852,-0.579434995,0.562716526,neg,ns,-0.003020664,0.002497356,-1.209544477,0.227375332,neg,ns,0.643256654,0.000112285,0.0000859,1.307407386,0.192043223,pos,ns,0.82364431,Sgip1,Sgip1_Exon,4,102927544,102927593,102927544,102927545,50,-,CGGCCAAAGCTACCTCCAGGAAAACCTGGAGTTGGAGATGTGGTATGTTC,"Exon (Sgip1-201/Sgip1, exon 15 of 24)",4,102760135,102971983,211849,1,Sgip1-201,167409,Sgip1-201;Sgip1-202;Sgip1-203;Sgip1-205;Sgip1-213;Sgip1-206;Sgip1-211,Sgip1;Sgip1;Sgip1;Sgip1;Sgip1;Sgip1;Sgip1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,6,73094,ENSMUSG00000028524,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27170,cg23088609,0.00000148,0.00000608,0.243392274,0.807862508,gain,ns,0.00000598,0.0000103,0.57939668,0.56274234,pos,ns,-0.003439048,0.00302547,-1.136698483,0.256542259,neg,ns,0.590841085,0.0000124,0.000104046,0.118945463,0.905395603,pos,ns,0.817395377,Gm14220,Gm14220_Intergenic_downstream,2,159986969,159987018,159987017,159987018,50,-,TCTATAATCAACGTTCATTTCAAATCTGATTGCATGCTACTAAACACCCG,Distal Intergenic,2,159978274,159978722,449,1,Gm14220-201,8744,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,3,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23762,cg15447614,0.00000158,0.00000214,0.737870582,0.461151272,gain,ns,-0.0000021,0.00000363,-0.579334678,0.562784115,neg,ns,0.000555314,0.001062651,0.522574414,0.601643702,pos,ns,0.220660625,-0.0000174,0.0000365,-0.475417102,0.634824518,neg,ns,0.032752051,Foxo6,Foxo6_Intron,4,120282907,120282956,120282955,120282956,50,+,GTGGGAGTCTGCCGGGCGTGCCAGCAACTGTGCCAGGAGCGGCTGGCACG,"Intron (Foxo6-201/Foxo6, intron 1 of 1)",4,120267079,120287349,20271,2,Foxo6-201,4393,Foxo6-201,Foxo6,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,14,42,329934,ENSMUSG00000052135,conserved gene and region,4,120282454,120283157,704,*,704,60,0.700284091,0.697259822,0.085227273,2.40E-41,CpGisland,TRUE,U3,Pr-B
10860,cg05207134,-0.000000698,0.00000199,-0.350368233,0.72630031,loss,ns,-0.00000196,0.00000338,-0.579163299,0.562899592,neg,ns,-0.0000364,0.000991401,-0.03669369,0.970752857,neg,ns,0.012891323,-0.0000153,0.0000341,-0.447667426,0.654705897,neg,ns,0.962149146,Ddx46,Ddx46_Exon,13,55660323,55660372,55660323,55660324,50,+,CGCTGTAATCTCTAATATGTTTTTTTCTAGGTGATGCTGTCAGATAATGG,"Exon (Ddx46-204/Ddx46, exon 12 of 16)",13,55635027,55681256,46230,1,Ddx46-201,25296,Ddx46-201;Ddx46-202;Ddx46-204;Ddx46-203,Ddx46;Ddx46;Ddx46;Ddx46,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,212880,ENSMUSG00000021500,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11990,cg06316858,0.0000904,0.00000923,9.79186424,6.67E-20,gain,yes,-0.00000908,0.0000157,-0.579076916,0.562957801,neg,ns,0.012245921,0.004595441,2.664797596,0.008106741,pos,ns,2.091153693,-0.000233345,0.000158037,-1.476519718,0.140819502,neg,ns,0.141275862,Slc4a10,Slc4a10_fiveUTR,2,62046643,62046692,62046691,62046692,50,+,ACATGGAGATTAAAGACCAGGGAGCCCAAATGGAGCCGCTGCTGCCTACG,Promoter (<=1kb),2,62046645,62326730,280086,1,Slc4a10-203,0,Slc4a10-202;Slc4a10-206;Slc4a10-201;Slc4a10-203,Slc4a10;Slc4a10;Slc4a10;Slc4a10,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,12,94229,ENSMUSG00000026904,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
920,cg23192185,-0.0000114,0.0000167,-0.684668066,0.494064967,loss,ns,0.0000164,0.0000283,0.579020009,0.56299615,pos,ns,-0.020567393,0.008296659,-2.478997053,0.013706831,neg,ns,1.863062937,0.000295457,0.000285321,1.035522115,0.30123224,pos,ns,0.400381064,Gdf6,Gdf6_Intron,4,9849105,9849154,9849153,9849154,50,-,GTATTCGATTTGTTTGAGTCCCTTATAAAAACACTAATGCAGACCAGACG,"Intron (Gdf6-201/Gdf6, intron 1 of 1)",4,9844372,9862345,17974,1,Gdf6-201,4733,Gdf6-201,Gdf6,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,11,242316,ENSMUSG00000051279,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
27102,cg07645084,-0.000018,0.000004,-4.507030117,0.00000933,loss,ns,0.00000394,0.0000068,0.57898215,0.563021663,pos,ns,-0.003518894,0.00199146,-1.766992318,0.078213431,neg,ns,1.106718664,0.000108023,0.0000685,1.57730302,0.115745692,pos,ns,0.915619609,Lrrc7,Lrrc7_Exon,3,158148598,158148647,158148598,158148599,50,-,CGGAGGTACATCCCGCCTCCCAAGTGGATAAGGATTCCATTGGCCACTAG,"Exon (Lrrc7-206/Lrrc7, exon 21 of 25)",3,158082891,158353433,270543,2,Lrrc7-206,204786,Lrrc7-206;Lrrc7-205;Lrrc7-204;Lrrc7-207;Lrrc7-201,Lrrc7;Lrrc7;Lrrc7;Lrrc7;Lrrc7,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,10,242274,ENSMUSG00000028176,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16174,cg21182944,-0.0000027,0.00000405,-0.665377323,0.506303925,loss,ns,0.00000398,0.00000688,0.578900659,0.563076582,pos,ns,0.0050766,0.002016552,2.517465446,0.012324178,pos,ns,1.909242054,-0.000149777,0.0000693,-2.159752268,0.031558294,neg,ns,0.920516017,Vsx2,Vsx2_Intergenic_upstream,12,84551890,84551939,84551890,84551891,50,-,CGTTAAAATTAAAAAGATCTATGTGCAAAGAGTCACAACGAATTTAATCA,Distal Intergenic,12,84569762,84595457,25696,1,Vsx2-201,-17872,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,20,12677,ENSMUSG00000021239,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5749,cg03202885,0.000107462,0.0000116,9.225103294,4.52E-18,gain,yes,-0.0000115,0.0000198,-0.578630963,0.563258356,neg,ns,0.01240158,0.005797745,2.139034878,0.033213855,pos,ns,1.478680717,-0.000431533,0.000199384,-2.164331452,0.031202116,neg,ns,0.395417412,Kctd15,Kctd15_Exon,7,34652912,34652961,34652960,34652961,50,+,AATGCCACGCTCATTTACACACAAAATGATTTTGTGTCCCATTGCGCTCG,"Exon (Kctd15-204/Kctd15, exon 1 of 2)",7,34639014,34654398,15385,2,Kctd15-202,1437,Kctd15-202;Kctd15-203;Kctd15-201;Kctd15-206;Kctd15-208;Kctd15-204;Kctd15-205;Kctd15-207,Kctd15;Kctd15;Kctd15;Kctd15;Kctd15;Kctd15;Kctd15;Kctd15,0;0;0;-4168;0;0;0;3771,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,25,233107,ENSMUSG00000030499,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
19249,cg18000086,-0.00000244,0.00000241,-1.010515013,0.313036684,loss,ns,0.00000237,0.0000041,0.57851944,0.56333353,pos,ns,0.003622827,0.001201379,3.015557852,0.002777195,pos,ns,2.556393639,-0.00011293,0.0000413,-2.733376732,0.006628919,neg,ns,0.942708994,Wnt11,Wnt11_threeUTR,7,98847327,98847376,98847327,98847328,50,+,CGGACAACCTCAGCTACGGGCTCCTCATGGGGGCCAAGTTTTCCGATGCT,3' UTR,7,98835112,98853811,18700,1,Wnt11-202,12215,Wnt11-203;Wnt11-202;Wnt11-201;Wnt11-205;Wnt11-204;Wnt11-206,Wnt11;Wnt11;Wnt11;Wnt11;Wnt11;Wnt11,12215;0;0;0;0;-430,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,6,22411,ENSMUSG00000015957,conserved gene but different region,7,98847156,98847371,216,*,216,17,0.689814815,0.675,0.078703704,1.63E-11,CpGisland,TRUE,U11,Tr-P
15329,cg22158769,-0.00000115,0.00000418,-0.275610727,0.783030694,loss,ns,0.0000041,0.00000709,0.578519254,0.563333655,pos,ns,0.002347029,0.002078519,1.129183734,0.259693359,pos,ns,0.585539156,-0.0000701,0.0000715,-0.980378403,0.327663846,neg,ns,0.067246522,Arhgef33,Arhgef33_Exon,17,80373552,80373601,80373552,80373553,50,+,CGCACGGCAAGGCCAAGCCGCTGAGCCGCTCTCTCAAAGAGTTCCCGCGT,"Exon (Arhgef33-201/Arhgef33, exon 15 of 18)",17,80307407,80388688,81282,1,Arhgef33-201,66145,Arhgef33-201;Arhgef33-202;Arhgef33-208;Arhgef33-206;Arhgef33-203;Arhgef33-211;Arhgef33-207;Arhgef33-209;Arhgef33-210;Gm10190-201,Arhgef33;Arhgef33;Arhgef33;Arhgef33;Arhgef33;Arhgef33;Arhgef33;Arhgef33;Arhgef33;Gm10190,0;0;26012;0;-56;0;0;0;0;-11,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,5,381112,ENSMUSG00000054901,conserved gene and region,17,80373055,80373773,719,*,719,107,0.741307371,1.087392226,0.148817803,2.79E-102,CpGisland,TRUE,NA,NRS
27896,cg22795030,-0.000000408,0.0000029,-0.140616578,0.888264176,loss,ns,-0.00000285,0.00000493,-0.578441767,0.56338589,neg,ns,0.001636379,0.00144372,1.133446412,0.257902635,pos,ns,0.588544221,-0.0000757,0.0000496,-1.525379389,0.128184042,neg,ns,0.961486609,Prox1,Prox1_Intron,1,190152936,190152985,190152984,190152985,50,-,TCATCACTTTTGTTTTTAAGCAGCTACTGCATAGAGAATTTCAATGTACG,"Intron (Prox1-202/Prox1, intron 3 of 4)",1,190118035,190170714,52680,2,Prox1-202,17729,Prox1-202;Prox1-201;Prox1-203,Prox1;Prox1;Prox1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,59,19130,ENSMUSG00000010175,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12491,cg26016635,0.0000035,0.00000558,0.627977361,0.530481105,gain,ns,0.00000548,0.00000948,0.578397527,0.563415714,pos,ns,0.006775755,0.002777071,2.439892261,0.015251783,pos,ns,1.81667939,-0.000257082,0.0000955,-2.691861569,0.007491355,neg,ns,0.875446889,Grid2,Grid2_Exon,6,64665871,64665920,64665919,64665920,50,-,TGACCTGGAGCACCTCCATAGACGTGTAAATAGCTTGTGCACAGATGACG,"Exon (Grid2-201/Grid2, exon 16 of 16)",6,63256027,64668285,1412259,1,Grid2-201,1409844,Grid2-201;Grid2-207,Grid2;Grid2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,10,14804,ENSMUSG00000071424,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12325,cg01363325,-0.0000213,0.00000743,-2.863993581,0.004468733,loss,ns,0.0000073,0.0000126,0.578386101,0.563423417,pos,ns,-0.002672185,0.003699972,-0.722217502,0.470705205,neg,ns,0.327251,0.000114045,0.000127242,0.896288971,0.370793917,pos,ns,0.890013062,Fign,Fign_Intergenic_downstream,2,63963058,63963107,63963106,63963107,50,+,GATTAAATATGACTACAGGGCCTAATCAAATAGCTAGTCACTGAACAACG,Distal Intergenic,2,63980447,64097988,117542,2,Fign-202,134881,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,28,84,60344,ENSMUSG00000075324,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7087,cg20153801,-0.00000497,0.00000207,-2.397154563,0.017114653,loss,ns,-0.00000204,0.00000352,-0.578385043,0.56342413,neg,ns,-0.000812159,0.001031082,-0.787676237,0.431487947,neg,ns,0.365031331,0.0000492,0.0000355,1.38683819,0.166487509,pos,ns,0.056905503,Wasf1,Wasf1_Intron,10,40884646,40884695,40884646,40884647,50,+,CGGCAGGACTCGCCCATTGTGCCACCCAGATAATTATTCAACTATGCAGC,"Intron (Wasf1-201/Wasf1, intron 1 of 8)",10,40883475,40938569,55095,1,Wasf1-201,1171,Cdc40-201;Cdc40-204;Cdc40-202;Cdc40-203;Wasf1-201;Wasf1-202,Cdc40;Cdc40;Cdc40;Cdc40;Wasf1;Wasf1,-1335;-1537;-1554;-1506;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,83767,ENSMUSG00000019831,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
8739,cg14155184,0.00000113,0.0000035,0.323253091,0.74672152,gain,ns,0.00000344,0.00000595,0.578364547,0.563437947,pos,ns,0.001140729,0.00174236,0.654703246,0.513144295,pos,ns,0.289760495,-0.0000361,0.0000599,-0.602445517,0.547318034,neg,ns,0.917091435,Tmem63b,Tmem63b_Exon,17,45662872,45662921,45662872,45662873,50,+,CGATGATGGGGCAGGTGATACTGTAGGTCATGACCACCGTGAAGACGCAC,"Exon (Tmem63b-201/Tmem63b, exon 20 of 24)",17,45660171,45686259,26089,2,Tmem63b-201,23338,Capn11-201;Capn11-202;Tmem63b-201;Tmem63b-208;Tmem63b-203;Tmem63b-207,Capn11;Capn11;Tmem63b;Tmem63b;Tmem63b;Tmem63b,-3547;-3575;0;0;3533;23052,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,12,224807,ENSMUSG00000036026,conserved gene and region,17,45662805,45662957,153,*,153,13,0.647058824,0.81583265,0.08496732,2.55E-09,CpGisland,TRUE,NA,NRS
16479,cg04425443,-0.00000168,0.00000168,-1.004631236,0.315857973,loss,ns,0.00000165,0.00000285,0.57815371,0.563580092,pos,ns,0.001068612,0.000834623,1.280352322,0.201378438,pos,ns,0.695987032,-0.0000302,0.0000287,-1.051988521,0.293624137,neg,ns,0.965950633,Dmd,Dmd_Exon,X,85144102,85144151,85144102,85144103,50,+,CGAAGCATCCCCGAATGGGCTACCTGCCAGTGCAGACTGTCTTAGAGGGG,"Exon (Dmd-203/Dmd, exon 70 of 79)",20,82948903,85206141,2257239,1,Dmd-203,2195199,Dmd-203;Dmd-215;Dmd-210;Dmd-207;Dmd-214;Dmd-212;Dmd-202;Dmd-201,Dmd;Dmd;Dmd;Dmd;Dmd;Dmd;Dmd;Dmd,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,20,28,13405,ENSMUSG00000045103,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25219,cg25883288,-0.00000347,0.00000143,-2.424812898,0.015887518,loss,ns,0.00000141,0.00000243,0.578132063,0.563594687,pos,ns,0.001497809,0.000713205,2.100110494,0.036526917,pos,ns,1.437386986,-0.0000509,0.0000245,-2.074398352,0.038867331,neg,ns,0.051409699,Arid1a,Arid1a_Promoter,4,133757424,133757473,133757424,133757425,50,-,CGAGTTTGAGCAAAAGGGCAACTATGTCAGTTGACGGAAGCCAGAAGCAG,Promoter (<=1kb),4,133679941,133756769,76829,2,Arid1a-201,-704,Arid1a-202;Arid1a-205;Arid1a-201;Arid1a-203,Arid1a;Arid1a;Arid1a;Arid1a,0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,4,31,93760,ENSMUSG00000007880,mapped to different genes,4,133757142,133757554,413,*,413,27,0.595641647,0.7375,0.065375303,6.90E-16,CpGisland,TRUE,U1,Pr-A
11304,cg03199103,0.00000988,0.00000677,1.458235628,0.145787971,gain,ns,0.00000665,0.0000115,0.578115205,0.563606053,pos,ns,0.001256108,0.003370789,0.372645106,0.709667243,pos,ns,0.148945241,-0.0000751,0.000115921,-0.647901293,0.517528354,neg,ns,0.875679203,Gm13531,Gm13531_Intergenic_upstream,2,57517990,57518039,57517990,57517991,50,+,CGGTACACGTTAAATGGTGAGTGGGTAGATATCTGTCTTGTACTCATCTC,Distal Intergenic,2,57425167,57425709,543,2,Gm13531-201,-92281,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,10,271788,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11047,cg19282646,0.0000474,0.00000746,6.352551533,7.54E-10,gain,yes,0.00000733,0.0000127,0.578045709,0.563652912,pos,ns,0.006737945,0.003715268,1.813582433,0.070708886,pos,ns,1.150526007,-0.000237063,0.000127768,-1.855420519,0.064485266,neg,ns,0.642084968,Gm13518,Gm13518_Intergenic_downstream,2,56456270,56456319,56456318,56456319,50,+,TCTTGTATGCTGTCATCCCCTGAGCCTGATAACACAAAATCATTTCCACG,Distal Intergenic,2,56039853,56040085,233,1,Gm13518-201,416417,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,37,37,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5117,cg27090975,-0.0000271,0.00000701,-3.862816993,0.00013649,loss,ns,-0.00000688,0.0000119,-0.578037391,0.563658521,neg,ns,-0.005112216,0.003487456,-1.465887045,0.14369263,neg,ns,0.842565505,-0.000019,0.000119933,-0.158073428,0.874501857,neg,ns,0.791634406,Akap8l,Akap8l_Exon,17,32338461,32338510,32338509,32338510,50,+,AGTTGGTGGTGTTATCCTGGCCATAGCCATAGCCATAGCCATAGCCCTCG,"Exon (Akap8l-206/Akap8l, exon 4 of 13)",17,32321424,32350575,29152,2,Akap8l-206,12065,Akap8l-206;Akap8l-207;Akap8l-201;Akap8l-209;Akap8l-212;Akap8l-204;Akap8l-210;Akap8l-208;Akap8l-211;Akap8l-213;Akap8l-202;Akap8l-203,Akap8l;Akap8l;Akap8l;Akap8l;Akap8l;Akap8l;Akap8l;Akap8l;Akap8l;Akap8l;Akap8l;Akap8l,0;0;0;0;-4980;0;0;-4987;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,7,54194,ENSMUSG00000002625,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
554,cg18568634,-0.00000139,0.0000205,-0.067697443,0.946070127,loss,ns,0.0000201,0.0000348,0.57802822,0.563664705,pos,ns,-0.00590388,0.010186011,-0.579606648,0.562600884,neg,ns,0.24979959,0.000330287,0.000350296,0.942880399,0.346476303,pos,ns,0.262465971,Dlx6,Dlx6_Exon,6,6869580,6869629,6869628,6869629,50,-,TCCATTCTCTTAAATGCAGCCATAATTAGAGTAATTTTTCATGTAGCCCG,"Exon (Dlx6os1-201/Dlx6os1-201, exon 2 of 3)",6,6863798,6865430,1633,1,Dlx6-204,5831,Dlx6-203;Dlx6-202;Dlx6-201;Dlx6-204,Dlx6;Dlx6;Dlx6;Dlx6,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,36,13396,ENSMUSG00000029754,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
14226,cg22676465,0.0000297,0.0000174,1.702323625,0.089697181,gain,ns,0.0000171,0.0000296,0.578014202,0.563674157,pos,ns,-0.016889241,0.008676445,-1.946562238,0.052490343,neg,ns,1.279920591,0.000763623,0.000298382,2.559210726,0.010965477,pos,ns,0.728579476,Onecut1,Onecut1_Exon,9,74854977,74855026,74854977,74854978,50,-,CGGAATAATTTTCGCATTACAGTAGCTTGGATTTGCTTTTAATTCATATT,Promoter (6-7kb),9,74861921,74891781,29861,1,Onecut1-201,-6944,NA,NA,NA,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,16,28,15379,ENSMUSG00000043013,conserved gene but different region,9,74854915,74854990,76,*,76,8,0.513157895,1.6,0.105263158,0.00000148,CpGisland,TRUE,U13,Hc-P
25961,cg20380871,-0.00000241,0.000000739,-3.258967543,0.001242402,loss,ns,0.000000726,0.00000126,0.577998838,0.563684517,pos,ns,-0.000207762,0.000367873,-0.56476623,0.572641218,neg,ns,0.242117395,0.00000549,0.0000127,0.433823615,0.664718283,pos,ns,0.025308522,Efhd2,Efhd2_Exon,4,141874585,141874634,141874633,141874634,50,-,TGATCTGCTTCCTGGAGAACTCCTTGAACTCGGTGTAGGGGTTGAAGACG,Promoter (<=1kb),4,141858142,141874920,16779,2,Efhd2-201,286,Efhd2-201,Efhd2,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,27984,ENSMUSG00000040659,conserved gene and region,4,141874615,141875101,487,*,487,62,0.743326489,0.934220297,0.127310062,1.73E-54,CpGisland,TRUE,U1,Pr-A
22487,cg12010100,0.0000236,0.00000404,5.847883069,1.26E-08,gain,yes,0.00000397,0.00000686,0.577989378,0.563690895,pos,ns,0.007130879,0.002009802,3.548050729,0.000448142,pos,ns,3.348584814,-0.000179023,0.0000691,-2.590140211,0.010046768,neg,ns,0.075565831,Gm12830,Gm12830_Promoter,4,114821927,114821976,114821975,114821976,50,-,TGGAAGCGGTGAGATATGTAATGCTTTATTAAGCGGTCTCAGCTACAACG,Promoter (<=1kb),4,114821722,114856166,34445,1,Gm12830-201,205,Gm12830-201,Gm12830,0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,6,26,433746,ENSMUSG00000055198,mapped to different genes,4,114821908,114822167,260,*,260,26,0.676923077,0.936936937,0.1,4.14E-20,CpGisland,TRUE,U3,Pr-B
12922,cg05882781,-0.00000945,0.00000857,-1.101555229,0.271509612,loss,ns,0.00000842,0.0000146,0.577963213,0.563708539,pos,ns,-0.004544156,0.004267798,-1.064754075,0.287815856,neg,ns,0.540885284,0.0001133,0.000146769,0.771960689,0.44072579,pos,ns,0.089488916,Arid5b,Arid5b_Promoter,10,68279639,68279688,68279639,68279640,50,+,CGTGTGCATTCTTTAATTTTGAAGTATATACACTAGTACGTGTTTACAAT,Promoter (<=1kb),10,68092520,68278740,186221,2,Arid5b-204,-899,Arid5b-204;Arid5b-201;Arid5b-202,Arid5b;Arid5b;Arid5b,0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,16,33,71371,ENSMUSG00000019947,conserved gene and region,10,68279593,68279827,235,*,235,14,0.50212766,0.955007257,0.059574468,5.38E-08,CpGisland,TRUE,U1,Pr-A
14022,cg25362349,-0.00000058,0.000000354,-1.639620514,0.102098439,loss,ns,0.000000347,0.000000601,0.577932645,0.563729151,pos,ns,0.000432316,0.000176134,2.45446587,0.014658863,pos,ns,1.833899707,-0.0000149,0.00000606,-2.454214031,0.014668933,neg,ns,0.009289498,Arpc2,Arpc2_fiveUTR,1,74236840,74236889,74236888,74236889,50,+,GGTGAACAACCGCATCATCGAGGAGACGCTCGCGCTCAAGTTCGAGAACG,Promoter (<=1kb),1,74236084,74236888,805,1,Arpc2-204,756,Arpc2-204;Arpc2-203;Arpc2-201;Arpc2-202,Arpc2;Arpc2;Arpc2;Arpc2,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,6,76709,ENSMUSG00000006304,conserved gene but different region,1,74236248,74237193,946,*,946,100,0.695560254,0.886431784,0.105708245,2.03E-78,CpGisland,TRUE,U1,Pr-A
15209,cg19773906,0.0000312,0.0000146,2.138920521,0.033223197,gain,ns,-0.0000143,0.0000248,-0.577884008,0.563761948,neg,ns,0.018342558,0.007255673,2.52802981,0.011966868,pos,ns,1.922019511,-0.000263093,0.000249522,-1.054386898,0.292526899,neg,ns,0.828220468,Rad51b,Rad51b_Intron,12,79663383,79663432,79663431,79663432,50,-,CCCTGCTAATCTCAGACAGTTGCTATGATCAATGGTTTCTTTCATTTCCG,"Intron (Rad51b-202/Rad51b, intron 8 of 10)",12,79297282,79814690,517409,1,Rad51b-202,366101,Rad51b-202;Rad51b-203;Rad51b-204,Rad51b;Rad51b;Rad51b,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,6,19363,ENSMUSG00000059060,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24074,cg05708618,0.0000078,0.00000552,1.412716822,0.158742172,gain,ns,-0.00000542,0.00000938,-0.577781492,0.563831081,neg,ns,-0.004567355,0.002747049,-1.662640618,0.097395099,neg,ns,1.011462898,-0.00000316,0.0000945,-0.03343819,0.973346675,neg,ns,0.815715331,Rimklb,Rimklb_Intron,6,122451043,122451092,122451043,122451044,50,-,CGGATGCTCCTAGAGGCCTGCTGTGCTTCTGGGAACTGAGGCACAGGGAT,"Intron (Rimklb-204/Rimklb, intron 6 of 7)",6,122447296,122466587,19292,2,Rimklb-204,15495,Rimklb-204;Rimklb-202;Rimklb-201;Rimklb-206,Rimklb;Rimklb;Rimklb;Rimklb,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,7,108653,ENSMUSG00000040649,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18070,cg17407609,-0.00000775,0.00000201,-3.859618966,0.000138205,loss,ns,0.00000197,0.00000341,0.577746357,0.563854776,pos,ns,0.000604736,0.000999827,0.60484046,0.54572747,pos,ns,0.263024185,-0.0000287,0.0000344,-0.835255069,0.40421737,neg,ns,0.929377929,Pola1,Pola1_Intron,X,93497731,93497780,93497731,93497732,50,+,CGCAAGTCGAGTCATAATAGCAGTAATGATCTCCCCAATCAGGAGACTCG,"Intron (Pola1-201/Pola1, intron 26 of 36)",20,93304767,93632155,327389,2,Pola1-201,134375,Pola1-201,Pola1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,59,62,18968,ENSMUSG00000006678,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12445,cg02418783,0.0000392,0.00000564,6.940473307,2.29E-11,gain,yes,-0.00000554,0.00000959,-0.577656674,0.563915259,neg,ns,0.004096304,0.002808344,1.458618721,0.145682505,pos,ns,0.836592598,-0.000159912,0.0000966,-1.655772977,0.09877968,neg,ns,0.053079338,Onecut2,Onecut2_Exon,18,64340404,64340453,64340404,64340405,50,+,CGATGCCTCACCAAAGACCTAGAAGGCTGCGCCATGAACCCGGAGCTGAC,Promoter (<=1kb),18,64340020,64400987,60968,1,Onecut2-201,384,Onecut2-201,Onecut2,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,19,225631,ENSMUSG00000045991,conserved gene and region,18,64339929,64340544,616,*,616,67,0.73538961,0.829721362,0.108766234,1.14E-53,CpGisland,TRUE,NA,NRS
28,cg20323457,0.00000687,0.00000318,2.159932036,0.031544246,gain,ns,-0.00000312,0.0000054,-0.577572855,0.56397179,neg,ns,0.001189017,0.00158321,0.751016515,0.453212427,pos,ns,0.34369819,0.0000247,0.0000544,0.45384591,0.6502573,pos,ns,0.935252018,Cdk6,Cdk6_Intron,5,3395235,3395284,3395283,3395284,50,+,GATTTGTCTCATCTTTGCAGGACACAGAGCAAATTAACATGAAAATATCG,"Intron (Cdk6-202/Cdk6, intron 3 of 7)",5,3343893,3531008,187116,1,Cdk6-202,51342,Cdk6-202;Cdk6-203;Cdk6-201,Cdk6;Cdk6;Cdk6,0;51319;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,2,12571,ENSMUSG00000040274,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7537,cg16120483,-0.00000332,0.00000188,-1.764771625,0.078586809,loss,ns,-0.00000184,0.00000319,-0.577491051,0.564026965,neg,ns,-0.000214779,0.000935736,-0.229529394,0.818608844,neg,ns,0.086923568,-0.00000595,0.0000322,-0.184853086,0.853465144,neg,ns,0.940918815,Arhgef12,Arhgef12_Exon,9,43040560,43040609,43040608,43040609,50,+,TCCTCTGAACTAGACTTTGTCTTCTTGGAGGAGCTATCTGCACAAGAGCG,"Exon (Arhgef12-202/Arhgef12, exon 4 of 41)",9,42963842,43105987,142146,2,Arhgef12-202,65378,Arhgef12-202;Arhgef12-201;Arhgef12-203;Arhgef12-205,Arhgef12;Arhgef12;Arhgef12;Arhgef12,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,5,69632,ENSMUSG00000059495,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18958,cg12288064,-0.0000113,0.00000177,-6.396747444,5.84E-10,loss,yes,0.00000173,0.000003,0.577485717,0.564030563,pos,ns,-0.000809286,0.000879046,-0.920640439,0.357954048,neg,ns,0.446172722,0.000029,0.0000302,0.958061883,0.338778137,pos,ns,0.968607887,Nfia,Nfia_Exon,4,98063102,98063151,98063102,98063103,50,+,CGCTATCACCCTCAGGAGACGCTGAAAGAATTTGTCCAACTTGTCTGCCC,"Exon (Nfia-202/Nfia, exon 8 of 11)",4,97777608,98118871,341264,1,Nfia-202,285494,Nfia-202;Nfia-203;Nfia-205;Nfia-201;Nfia-204;Nfia-207,Nfia;Nfia;Nfia;Nfia;Nfia;Nfia,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,44,18027,ENSMUSG00000028565,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16055,cg15428926,-0.00000641,0.00000567,-1.130193523,0.259268373,loss,ns,-0.00000556,0.00000963,-0.577480774,0.564033897,neg,ns,-0.002500731,0.002820634,-0.88658467,0.375989813,neg,ns,0.424823922,-0.000133013,0.000097,-1.371252956,0.171287906,neg,ns,0.885577803,Bnc2,Bnc2_Intron,4,84307165,84307214,84307165,84307166,50,-,CGTGCCATTAGAAGCACTTTTACAAGTGTATATTCATCCACCAATTAGCT,"Intron (Bnc2-201/Bnc2, intron 6 of 7)",4,84275095,84675034,399940,2,Bnc2-201,367820,Bnc2-201;Bnc2-202;Bnc2-214;Bnc2-215;Bnc2-206;Bnc2-211;Bnc2-205;Bnc2-217;Bnc2-207;Bnc2-212,Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,91,242509,ENSMUSG00000028487,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27518,cg07929848,0.0000345,0.00000954,3.618510018,0.000345871,gain,ns,-0.00000935,0.0000162,-0.577371454,0.564107635,neg,ns,-0.00355362,0.004746262,-0.748719748,0.454593834,neg,ns,0.34237646,0.000109096,0.000163224,0.66838155,0.504387426,pos,ns,0.80676582,Pbx1,Pbx1_Intergenic_upstream,1,168911484,168911533,168911484,168911485,50,-,CGTTTGGCAACATCTGGTTATGTCTCATCACATTGCAAATTTATGACCCT,Distal Intergenic,1,168119364,168432270,312907,2,Pbx1-208,-479263,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,17,84,18514,ENSMUSG00000052534,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
704,cg19174345,-0.000000615,0.00000549,-0.112140149,0.910784861,loss,ns,-0.00000538,0.00000932,-0.577337728,0.564130385,neg,ns,-0.001108849,0.002730952,-0.406030319,0.685000447,neg,ns,0.164309145,-0.0000452,0.0000939,-0.481516791,0.630488975,neg,ns,0.883675229,Gm49535,Gm49535_Intergenic_upstream,16,8199087,8199136,8199087,8199088,50,+,CGTAACATAAATGTAAATCTTTTATGCTAACGCTGTCAGAGGGTTAGCTC,Distal Intergenic,16,8103374,8103788,415,2,Gm49535-201,-95299,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,5,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4989,cg20416031,0.0000229,0.00000487,4.706134567,0.00000381,gain,ns,-0.00000477,0.00000827,-0.577292986,0.564160567,neg,ns,0.00333546,0.002422774,1.376711088,0.16959504,pos,ns,0.770586854,-0.0000636,0.0000833,-0.763393332,0.445809423,neg,ns,0.094781029,Prkg1,Prkg1_Intron,19,31664397,31664446,31664445,31664446,50,+,TTCCTACTTGAGACCAAAGCCAGCCCTGGCTTCTGAGCATGCCCAGTCCG,"Intron (Prkg1-201/Prkg1, intron 1 of 17)",19,30564489,31765033,1200545,2,Prkg1-201,100587,Prkg1-201;Prkg1-202,Prkg1;Prkg1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,13,19091,ENSMUSG00000052920,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
1517,cg12613764,0.0000288,0.00000856,3.36068927,0.000874744,gain,ns,0.00000839,0.0000145,0.577058118,0.564319012,pos,ns,0.003038091,0.004260847,0.71302508,0.476366618,pos,ns,0.32205868,-0.00014312,0.00014653,-0.976729568,0.32946463,neg,ns,0.553111687,Gm11819,Gm11819_Intergenic_upstream,4,13408477,13408526,13408477,13408478,50,-,CGCAGCATTTGACAGATTGGGCAGAACTGCCACGAAAGAGTCTGACACAG,Distal Intergenic,4,13444770,13445141,372,1,Gm11819-201,-36293,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,19,22,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23646,cg09811333,-0.0000229,0.00000392,-5.845848643,1.28E-08,loss,yes,0.00000384,0.00000666,0.577049565,0.564324782,pos,ns,-0.002217758,0.001951334,-1.136534072,0.256610914,neg,ns,0.590724877,-0.000015,0.0000671,-0.223543065,0.823260109,neg,ns,0.906165347,Zmynd12,Zmynd12_Exon,4,119441802,119441851,119441850,119441851,50,+,GTCCTCAAATCAACTGACTGTAGTAATGCCACCCACTCTTTACTGCATCG,"Exon (Zmynd12-201/Zmynd12, exon 4 of 8)",4,119422814,119453988,31175,1,Zmynd12-201,18988,Zmynd12-201;Zmynd12-203;Zmynd12-202,Zmynd12;Zmynd12;Zmynd12,0;0;-2869,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,332934,ENSMUSG00000070806,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19107,cg26425462,-0.0000253,0.0000097,-2.603221194,0.0096794,loss,ns,-0.00000951,0.0000165,-0.576984827,0.56436846,neg,ns,0.000476117,0.004828544,0.098604715,0.921515854,pos,ns,0.035497189,-0.000184913,0.000166053,-1.113573679,0.266324805,neg,ns,0.821643207,Gm49017,Gm49017_Intergenic_downstream,14,98449143,98449192,98449191,98449192,50,-,AATTTAAAAAACATTTTAAAGGCCAAGTCTAAAATAGATTTGCACCCACG,Distal Intergenic,14,98519416,98519700,285,2,Gm49017-201,70557,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,11,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18250,cg00952114,0.0000239,0.0000033,7.24541772,3.44E-12,gain,yes,-0.00000323,0.0000056,-0.576817845,0.564481126,neg,ns,0.000928254,0.001640297,0.56590622,0.571866931,pos,ns,0.242705016,0.0000293,0.0000564,0.52003707,0.603408897,pos,ns,0.062910667,Ap3b1,Ap3b1_Intergenic_downstream,13,94596507,94596556,94596507,94596508,50,+,CGTTTTATTTATCGCAGTGCCAGGGGCCTCTTAGCGGAAGAGCGCTTCTC,Distal Intergenic,13,94542303,94547867,5565,1,Ap3b1-202,54204,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,33,55,11774,ENSMUSG00000021686,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26180,cg17575461,0.0000135,0.00000497,2.714992882,0.006999108,gain,ns,0.00000487,0.00000844,0.576736252,0.564536183,pos,ns,-0.000970311,0.002472714,-0.39240754,0.695026777,neg,ns,0.157998463,0.0000696,0.000085,0.818548434,0.413672866,pos,ns,0.830086894,Lmo4,Lmo4_Intergenic_upstream,3,144241526,144241575,144241574,144241575,50,-,TCAGCCCCTACCACTAACACCGAAATTCATCAGTCAAAGCAAATTAGCCG,Distal Intergenic,3,144188530,144205220,16691,2,Lmo4-201,-36355,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,54,16911,ENSMUSG00000028266,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14823,cg25840652,-0.00000345,0.00000229,-1.504563652,0.133454433,loss,ns,-0.00000224,0.00000389,-0.576635039,0.564604482,neg,ns,-0.002064765,0.001139682,-1.811702268,0.070999808,neg,ns,1.148742828,0.0000636,0.0000392,1.621835395,0.105855169,pos,ns,0.928710396,Fam172a,Fam172a_Intron,13,77891587,77891636,77891587,77891588,50,+,CGCTCCCCATTGAGTGGCTGTGGCCCATGAAGTTGCTGGCGTGCTGTGCA,"Intron (Fam172a-203/Fam172a, intron 6 of 10)",13,77708690,78163655,454966,1,Fam172a-203,182897,Fam172a-203;Fam172a-201;Fam172a-202;Fam172a-209;Fam172a-205;Fam172a-207;Fam172a-208,Fam172a;Fam172a;Fam172a;Fam172a;Fam172a;Fam172a;Fam172a,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,24,68675,ENSMUSG00000064138,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2221,cg02936468,-0.0000108,0.00000936,-1.154932658,0.249007472,loss,ns,0.00000917,0.0000159,0.576620428,0.564614342,pos,ns,0.002762053,0.004659199,0.592817231,0.553735673,pos,ns,0.256697497,-0.000102443,0.000160229,-0.63935025,0.523067261,neg,ns,0.147909113,Carnmt1,Carnmt1_threeUTR,19,18671159,18671208,18671159,18671160,50,+,CGTGAGCACTTCTGGAAGATCATTAATGCCTTCCGCTACTACGGGTAAGG,Promoter (<=1kb),19,18670764,18707200,36437,1,Carnmt1-201,395,Carnmt1-201;Carnmt1-202;Carnmt1-203,Carnmt1;Carnmt1;Carnmt1,0;0;-121,TRUE,FALSE,TRUE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,1,67383,ENSMUSG00000024726,conserved gene but different region,19,18670718,18671413,696,*,696,114,0.747126437,1.182985195,0.163793103,7.48E-115,CpGisland,TRUE,U1,Pr-A
2854,cg26845219,0.000103681,0.0000123,8.456419132,1.10E-15,gain,yes,0.000012,0.0000208,0.576552652,0.564660081,pos,ns,0.029409106,0.006102255,4.819383314,0.00000226,pos,ns,5.646195409,-0.000576311,0.000209856,-2.746222388,0.006380848,neg,ns,0.248841588,Zfp503,Zfp503_Promoter,14,21991340,21991389,21991340,21991341,50,+,CGGCGGAGGCGCTCAATTAAAAGCCTATCAGTTTGTAAGTAAATCAACGC,Promoter (1-2kb),14,21983959,21989601,5643,2,Zfp503-201,-1739,Zfp503-201,Zfp503,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,18,27,218820,ENSMUSG00000039081,mapped to different genes,14,21991208,21991513,306,*,306,17,0.513071895,0.84502924,0.055555556,3.96E-09,CpGisland,TRUE,NA,NRS
2309,cg09325228,-0.0000034,0.00000346,-0.981142141,0.327287738,loss,ns,0.00000339,0.00000588,0.576440847,0.564735536,pos,ns,0.000606623,0.001723732,0.351924361,0.725134094,pos,ns,0.139581675,0.0000284,0.0000593,0.479677586,0.631794911,pos,ns,0.939417892,Meis1,Meis1_Intron,11,19009538,19009587,19009586,19009587,50,+,TAAGCGATTCTTGTAATTTGCTCAAATAGCTTTATGTACCCAGCACTCCG,"Intron (Gm16140-201/Gm16140-201, intron 1 of 1)",11,18879817,19018985,139169,2,Meis1-206,9398,Meis1-206;Meis1-202;Meis1-209;Meis1-201;Meis1-203;Meis1-208;Meis1-207;Meis1-204;Meis1-205,Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,88,17268,ENSMUSG00000020160,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15812,cg05886134,0.00000606,0.00000335,1.810561418,0.071176814,gain,ns,0.00000328,0.00000569,0.576358326,0.564791231,pos,ns,0.002742428,0.001667202,1.64492801,0.100998238,pos,ns,0.995686203,0.0000226,0.0000573,0.395043878,0.693082185,pos,ns,0.06822501,Mef2c,Mef2c_fiveUTR,13,83524892,83524941,83524940,83524941,50,+,ATCTTCGGGCTGCTATTGGATTGACTTTGAAGGTTCTGTGTGGGTCGCCG,Promoter (<=1kb),13,83524920,83633887,108968,1,Mef2c-226,0,Mef2c-218;Mef2c-228;Mef2c-221;Mef2c-229;Mef2c-201;Mef2c-202;Mef2c-207;Mef2c-231;Mef2c-222;Mef2c-223;Mef2c-209;Mef2c-227;Mef2c-217;Mef2c-213;Mef2c-214;Mef2c-215;Mef2c-226,Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,9,41,17260,ENSMUSG00000005583,conserved gene and region,13,83524744,83524941,198,*,198,25,0.651515152,1.236263736,0.126262626,4.20E-22,CpGisland,TRUE,NA,NRS
14037,cg13922229,-0.0000323,0.00000717,-4.503660375,0.00000947,loss,ns,0.00000702,0.0000122,0.576319346,0.56481754,pos,ns,-0.012393229,0.003566661,-3.474742222,0.000584215,neg,ns,3.233427393,0.000170229,0.000122657,1.387846892,0.166180357,pos,ns,0.893198933,Nr1h2-ps,Nr1h2-ps_Intergenic_downstream,9,74358595,74358644,74358643,74358644,50,+,CGATAAATGCAGTCTTCAAAGCCACTCATCCATTCTTAATGGACAGCCCG,Distal Intergenic,9,74364586,74365063,478,2,Nr1h2-ps-201,6419,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,50800,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7063,cg19331623,0.0000166,0.00000182,9.131943408,8.93E-18,gain,yes,0.00000178,0.00000309,0.576185578,0.56490783,pos,ns,0.002398431,0.000904673,2.651159101,0.008433773,pos,ns,2.073978082,0.00000839,0.0000311,0.269751356,0.787531021,pos,ns,0.039272514,Tfap2a,Tfap2a_Intron,13,40730627,40730676,40730627,40730628,50,+,CGTTCCTGGAGCCTCCTAATAGCAGATATTCATGACTATTAATATTACAC,"Intron (Gm26688-201/Gm26688-201, intron 1 of 2)",13,40715675,40733823,18149,2,Tfap2a-202,3147,Tfap2a-201;Tfap2a-202;Tfap2a-205;Tfap2a-203;Tfap2a-209;Tfap2a-208;Tfap2a-206;Tfap2a-204;Tfap2a-207,Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,57,21418,ENSMUSG00000021359,mapped to different genes,13,40730503,40730628,126,*,126,13,0.571428571,1.267801858,0.103174603,2.07E-10,CpGisland,TRUE,U3,Pr-B
27754,cg16772207,0.0000188,0.000011,1.709089699,0.08843515,gain,ns,-0.0000107,0.0000186,-0.57610538,0.564961965,neg,ns,-0.009262261,0.005460839,-1.696124014,0.090866308,neg,ns,1.041597117,0.000169283,0.000187798,0.901409335,0.368070501,pos,ns,0.745665882,Myt1,Myt1_fiveUTR,2,181767012,181767061,181767060,181767061,50,+,CCTCAGAGAGTAAACAGATATATTGGAGCCCCAAGGGTTCATGGGTAGCG,Promoter (<=1kb),2,181767029,181795892,28864,1,Myt1-210,0,Myt1-201;Myt1-210;Myt1-202;Myt1-211;Myt1-203;Myt1-212,Myt1;Myt1;Myt1;Myt1;Myt1;Myt1,0;0;0;-242;0;-451,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,2,17932,ENSMUSG00000010505,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27256,cg00453591,-0.00001,0.00000593,-1.686806413,0.092646559,loss,ns,0.0000058,0.0000101,0.576088972,0.564973041,pos,ns,-0.003196002,0.002951136,-1.082973358,0.279661872,neg,ns,0.553366739,0.0000892,0.000101489,0.878891221,0.380140987,pos,ns,0.793550872,Dnm3,Dnm3_Exon,1,162217838,162217887,162217838,162217839,50,-,CGTCGCCCCAGTGTTCAGACTACCTGTTCAGGACAATGCCGTTGTACAGT,"Exon (Dnm3os-202/Dnm3os-202, exon 1 of 1)",1,161982453,162295636,313184,2,Dnm3-203,77749,Dnm3-203;Dnm3-202;Dnm3-201;Dnm3-205,Dnm3;Dnm3;Dnm3;Dnm3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,6,103967,ENSMUSG00000040265,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19758,cg12964846,0.0000826,0.0000105,7.84966405,6.85E-14,gain,yes,0.0000103,0.0000179,0.575874378,0.56511791,pos,ns,0.010074716,0.005239603,1.922801197,0.055420992,pos,ns,1.256325706,0.000226265,0.00018019,1.255705468,0.210168391,pos,ns,0.57958519,Gpat3,Gpat3_Intergenic_downstream,5,101032961,101033010,101033009,101033010,50,+,GACATATTGCCCTGAAGATCAAGTCCGGGTCATTCCATCAATTCACTGCG,Distal Intergenic,5,100846417,100846850,434,1,Gpat3-205,186544,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,15,15,231510,ENSMUSG00000029314,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10854,cg17384251,-0.0000202,0.00000799,-2.524531355,0.012084158,loss,ns,0.00000782,0.0000136,0.575828498,0.565148885,pos,ns,0.005567884,0.003976538,1.400183753,0.162458329,pos,ns,0.789258019,-0.00028611,0.000136753,-2.092165865,0.037236836,neg,ns,0.633755366,Tm9sf1,Tm9sf1_Exon,14,55641038,55641087,55641038,55641039,50,-,CGGAAGACATCTGTATGGATAATTTTCCAGCCATTGTCACCCTGGTCAAA,Promoter (<=1kb),14,55638301,55641060,2760,2,Tm9sf1-207,0,Gm49378-201;Tm9sf1-202;Tm9sf1-205;Tm9sf1-204;Tm9sf1-203;Tm9sf1-213;Tm9sf1-201;Tm9sf1-208;Tm9sf1-207;Tm9sf1-206;Tm9sf1-211;Tm9sf1-212;Tm9sf1-210;Tm9sf1-209,Gm49378;Tm9sf1;Tm9sf1;Tm9sf1;Tm9sf1;Tm9sf1;Tm9sf1;Tm9sf1;Tm9sf1;Tm9sf1;Tm9sf1;Tm9sf1;Tm9sf1;Tm9sf1,-3143;0;0;0;0;0;0;0;0;0;0;0;2684;2246,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,74140,ENSMUSG00000002320,conserved gene and region,14,55640991,55641159,169,*,169,11,0.544378698,0.882297105,0.065088757,0.000000917,CpGisland,TRUE,U10,Tr-S
12595,cg06868293,-0.00000328,0.00000367,-0.893820968,0.372111074,loss,ns,0.00000359,0.00000623,0.575796666,0.565170376,pos,ns,0.002015227,0.00182478,1.104367154,0.270290355,pos,ns,0.568169452,-0.000236357,0.0000628,-3.766409687,0.000198148,neg,ns,0.91878883,Scn2a,Scn2a_Exon,2,65682082,65682131,65682082,65682083,50,+,CGGGATCCATGGAATTGGTTGGATTTCACAGTCATTACTTTTGCGTAAGT,"Exon (Scn2a-204/Scn2a, exon 5 of 11)",2,65620771,65690175,69405,1,Scn2a-204,61311,Scn2a-204;Scn2a-201;Scn2a-205;Scn2a-202;Scn2a-203;Scn2a-210,Scn2a;Scn2a;Scn2a;Scn2a;Scn2a;Scn2a,0;0;0;0;-149;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,5,110876,ENSMUSG00000075318,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26838,cg08697414,-0.000044,0.00000975,-4.516988785,0.00000893,loss,ns,0.00000953,0.0000166,0.57573877,0.565209465,pos,ns,-0.011144337,0.004850519,-2.297555723,0.02225295,neg,ns,1.652612403,0.000302554,0.000166809,1.813774643,0.0706792,pos,ns,0.803073997,Pofut1,Pofut1_threeUTR,2,153259751,153259800,153259751,153259752,50,+,CGGCCCTATGTGGGCATTCATCTGCGCATTGGCTCTGACTGGGTAACTTC,3' UTR,2,153241533,153270247,28715,1,Pofut1-201,18218,Pofut1-201;Pofut1-202;Pofut1-208;Pofut1-203;Pofut1-204;Pofut1-206;Pofut1-207,Pofut1;Pofut1;Pofut1;Pofut1;Pofut1;Pofut1;Pofut1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,1,140484,ENSMUSG00000046020,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U5,En-Sd
12053,cg26521434,0.00000785,0.00000321,2.44681048,0.014967723,gain,ns,-0.00000314,0.00000545,-0.575733997,0.565212688,neg,ns,-0.001575907,0.001596103,-0.987346657,0.324242722,neg,ns,0.489129764,0.0000767,0.0000549,1.396701032,0.163502604,pos,ns,0.943750369,Efna5,Efna5_Exon,17,62607440,62607489,62607440,62607441,50,+,CGGCTGACTCATGTACGGTGTCATCTGTTCAAATAGAAAGCACACATTCC,"Exon (Efna5-201/Efna5, exon 5 of 5)",17,62604184,62881317,277134,2,Efna5-201,273828,Efna5-201;Efna5-202,Efna5;Efna5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,21,13640,ENSMUSG00000048915,conserved gene and region,17,62607324,62607456,133,*,133,11,0.578947368,1.015972222,0.082706767,8.11E-08,CpGisland,TRUE,U15,NS
98,cg19782140,0.00000675,0.00000293,2.301397948,0.022032151,gain,ns,-0.00000287,0.00000498,-0.575591675,0.565308785,neg,ns,0.000722726,0.001460034,0.495006295,0.620946336,pos,ns,0.206945931,-0.0000471,0.0000502,-0.938322669,0.348809096,neg,ns,0.924898074,Crebbp,Crebbp_Exon,16,4137425,4137474,4137425,4137426,50,+,CGTGTGCAGTTCTTCCAATGAGAGATGATTTGTCGTGAAGATGCACAATG,"Exon (Crebbp-201/Crebbp, exon 5 of 31)",16,4081328,4213997,132670,2,Crebbp-201,76523,Crebbp-201;Crebbp-205,Crebbp;Crebbp,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,7,12914,ENSMUSG00000022521,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6698,cg15769694,-0.0000033,0.00000413,-0.798327203,0.425291784,loss,ns,-0.00000404,0.00000701,-0.575564923,0.565326849,neg,ns,-0.001907652,0.002054263,-0.928631159,0.353802761,neg,ns,0.451238782,0.0000467,0.0000706,0.660383467,0.509498175,pos,ns,0.087809314,Gsk3b,Gsk3b_Exon,16,38090535,38090584,38090535,38090536,50,-,CGGCCCAGAACCACCTCCTTTGCGGAGAGCTGCAAGCCGGTGCAGCAGCC,"Exon (Gsk3b-201/Gsk3b, exon 1 of 11)",16,38089001,38246084,157084,1,Gsk3b-201,1534,Gsk3b-201;Gsk3b-202,Gsk3b;Gsk3b,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,11,56637,ENSMUSG00000022812,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
21660,cg03404298,-0.00000147,0.000000744,-1.974728493,0.049186084,loss,ns,-0.000000727,0.00000126,-0.575463878,0.565395081,neg,ns,0.00084829,0.000370343,2.290550786,0.022660478,pos,ns,1.644730926,-0.0000342,0.0000127,-2.68804917,0.007575415,neg,ns,0.981136199,Zfhx3,Zfhx3_Exon,8,108792956,108793005,108792956,108792957,50,+,CGACACAAAAGCAACAAGGATTACCTGAACAGCGACGGTTCTGCCAAAAG,"Exon (Zfhx3-204/Zfhx3, exon 8 of 16)",8,107942644,108961630,1018987,1,Zfhx3-204,850312,Zfhx3-204;Zfhx3-202;Zfhx3-201,Zfhx3;Zfhx3;Zfhx3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,46,177,11906,ENSMUSG00000038872,conserved gene and region,8,108792801,108793013,213,*,213,13,0.563380282,0.791142857,0.061032864,0.000000139,CpGisland,TRUE,U10,Tr-S
27864,cg02808768,0.0000303,0.0000101,3.004675143,0.002875543,gain,ns,-0.00000985,0.0000171,-0.57542356,0.565422308,neg,ns,0.01723737,0.005012607,3.438803366,0.000664233,pos,ns,3.177679627,-0.000807214,0.000172383,-4.682673832,0.00000424,neg,ns,0.215578877,Ush2a,Ush2a_Intron,1,188806130,188806179,188806130,188806131,50,-,CGTCAGACATCTTTATGTCAGAATATTGCAGTGATGGATGCAGTCTTCAG,"Intron (Ush2a-201/Ush2a, intron 49 of 70)",1,188263034,188965041,702008,1,Ush2a-201,543096,Ush2a-201,Ush2a,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,33,36,22283,ENSMUSG00000026609,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3057,cg17702917,0.0000926,0.00000872,10.62538603,1.08E-22,gain,yes,-0.00000852,0.0000148,-0.575419225,0.565425235,neg,ns,0.012070104,0.004337884,2.782486363,0.005725175,pos,ns,2.242211215,-0.000206452,0.000149179,-1.383916459,0.167379602,neg,ns,0.11644638,Pou3f2,Pou3f2_Exon,4,22488074,22488123,22488122,22488123,50,+,GCACGATGGAGGCGCTGGAGGTGAGCAGGCTGTAGTGGTTAGACGCTGCG,Promoter (<=1kb),4,22482780,22488366,5587,2,Pou3f2-201,243,Pou3f2-201,Pou3f2,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,18,18992,ENSMUSG00000095139,conserved gene and region,4,22487763,22488174,412,*,412,49,0.735436893,0.881726066,0.118932039,1.63E-41,CpGisland,TRUE,U3,Pr-B
27819,cg21532847,-0.00000967,0.00000774,-1.248396052,0.212828068,loss,ns,0.00000757,0.0000132,0.575348281,0.565473144,pos,ns,-0.004366538,0.003854464,-1.13285221,0.258151738,neg,ns,0.588124947,0.000110079,0.000132555,0.830443761,0.406927027,pos,ns,0.88798364,Esrrg,Esrrg_Intron,1,188113289,188113338,188113337,188113338,50,+,AAATGGAGTTAGTCCATTGTACATGTTTAATTTCCTATTAGTCTCTGGCG,"Intron (Esrrg-203/Esrrg, intron 4 of 7)",1,187609029,188214386,605358,1,Esrrg-203,504260,Esrrg-203;Esrrg-201;Esrrg-202,Esrrg;Esrrg;Esrrg,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,60,26381,ENSMUSG00000026610,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18746,cg03639783,-0.0000111,0.00000939,-1.180954459,0.238526073,loss,ns,0.00000917,0.0000159,0.575321946,0.565490929,pos,ns,0.001470079,0.004672072,0.314652395,0.753237264,pos,ns,0.123068203,-0.0000248,0.000160672,-0.154460381,0.87734726,neg,ns,0.156786844,Tbx21,Tbx21_Exon,11,97114673,97114722,97114721,97114722,50,-,CTCTGTCTGGTGCTGATTAAACTTGGACCACAACAGGTGGTTGTTGAGCG,Promoter (<=1kb),11,97098071,97115331,17261,2,Tbx21-201,609,Gm11572-201;Tbx21-201,Gm11572;Tbx21,2193;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,57765,ENSMUSG00000001444,conserved gene and region,11,97114721,97115340,620,*,620,74,0.716129032,0.931403398,0.119354839,1.48E-62,CpGisland,TRUE,U3,Pr-B
26221,cg19940576,-0.00000718,0.00000362,-1.981698764,0.04839601,loss,ns,0.00000354,0.00000615,0.575090046,0.565647551,pos,ns,0.003083148,0.001802589,1.710400553,0.088192316,pos,ns,1.054569252,-0.0000915,0.000062,-1.476707963,0.140769038,neg,ns,0.071940417,Hs2st1,Hs2st1_fiveUTR,3,144569823,144569872,144569871,144569872,50,+,AACTTGGGCGGCATCATAATCCTGAGGAGCCCCATGAAACCCGCTGCTCG,Promoter (<=1kb),3,144429706,144570181,140476,2,Hs2st1-201,309,Hs2st1-201;Hs2st1-202;Hs2st1-203;Selenof-203;Selenof-201;Selenof-202;Selenof-206,Hs2st1;Hs2st1;Hs2st1;Selenof;Selenof;Selenof;Selenof,0;0;0;-432;-554;-821;-842,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,6,23908,ENSMUSG00000040151,conserved gene and region,3,144569789,144570495,707,*,707,84,0.710042433,0.959232459,0.118811881,9.67E-71,CpGisland,TRUE,U1,Pr-A
1578,cg04051536,-0.000000166,0.00000163,-0.102191863,0.918670456,loss,ns,-0.00000159,0.00000277,-0.575001812,0.565707148,neg,ns,-0.000392382,0.00081047,-0.48414129,0.628627447,neg,ns,0.201606661,0.0000138,0.0000279,0.496501774,0.619892312,pos,ns,0.960717436,Zfp521,Zfp521_Intron,18,13790272,13790321,13790272,13790273,50,+,CGGTATCTTTTTTGGTGCTCAGAATAGCTCCAAGGTTAAGAGACTCCGAG,"Intron (Zfp521-201/Zfp521, intron 5 of 7)",18,13687013,13972787,285775,2,Zfp521-201,182466,Zfp521-201;Zfp521-205;Zfp521-204,Zfp521;Zfp521;Zfp521,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,81,225207,ENSMUSG00000024420,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18402,cg17662386,-0.0000039,0.00000308,-1.26369651,0.207288443,loss,ns,0.00000301,0.00000524,0.574928735,0.56575651,pos,ns,0.001156383,0.001534568,0.753555852,0.451687901,pos,ns,0.345161542,-0.000110648,0.0000528,-2.096657049,0.036834074,neg,ns,0.921883188,Arhgef9,Arhgef9_fiveUTR,X,95130967,95131016,95130967,95130968,50,+,CGTGATCCCATACTGCCTCAGCACTAACGATGGAATCTCCAGTGATCAGC,5' UTR,20,95048935,95166361,117427,2,Arhgef9-202,35345,Arhgef9-202;Arhgef9-217;Arhgef9-205;Arhgef9-207;Arhgef9-210;Arhgef9-203;Arhgef9-209;Arhgef9-206;Arhgef9-208;Arhgef9-204;Arhgef9-216;Arhgef9-219;Arhgef9-201;Arhgef9-218;Arhgef9-220;Arhgef9-213;Arhgef9-214,Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,8,14,236915,ENSMUSG00000025656,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7822,cg13750077,0.000034,0.00000923,3.686337728,0.000268494,gain,ns,0.00000902,0.0000157,0.574897039,0.56577792,pos,ns,0.0000177,0.004595387,0.003841341,0.996937531,pos,ns,0.001332054,0.000103812,0.000158035,0.656890183,0.511738891,pos,ns,0.820445615,Gm12455,Gm12455_Intergenic_downstream,4,44457444,44457493,44457444,44457445,50,+,CGTACTTACTGCAGATTAGCTAAATGAGCCAGTGCAGCTGGGAATGAGCT,Distal Intergenic,4,44382922,44383337,416,1,Gm12455-201,74522,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,15,15,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25775,cg22040285,0.0000186,0.00000899,2.070809314,0.039203988,gain,ns,0.00000878,0.0000153,0.574863372,0.565800663,pos,ns,0.00128113,0.004474704,0.286305003,0.774835765,pos,ns,0.110790341,-0.0000638,0.000153885,-0.4143109,0.67893296,neg,ns,0.133052286,Uncx,Uncx_Promoter,5,139539972,139540021,139539972,139539973,50,+,CGAGTAATGCGCAAGTTAATTTAGATAGTTAAAAATTAACTTGCGTGAAG,Promoter (3-4kb),5,139543494,139548179,4686,1,Uncx-201,-3473,Uncx-201;Uncx-202,Uncx;Uncx,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,22,88,22255,ENSMUSG00000029546,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
27943,cg07724495,-0.0000234,0.00000354,-6.601613277,1.76E-10,loss,yes,0.00000346,0.00000602,0.574837286,0.565818285,pos,ns,-0.006482956,0.001764176,-3.674779406,0.000280409,neg,ns,3.552207868,0.000101506,0.0000607,1.673093506,0.095317662,pos,ns,0.941168485,Rps6kc1,Rps6kc1_Exon,1,190798929,190798978,190798977,190798978,50,+,ATACTAATTACAAGATAAAACGCCTACTCAGTTAATTGGAAGCAACAGCG,"Exon (Rps6kc1-205/Rps6kc1, exon 4 of 4)",1,190700202,190911747,211546,2,Rps6kc1-204,112769,Rps6kc1-204;Rps6kc1-206;Rps6kc1-203;Rps6kc1-201;Rps6kc1-205;Rps6kc1-208,Rps6kc1;Rps6kc1;Rps6kc1;Rps6kc1;Rps6kc1;Rps6kc1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,29,320119,ENSMUSG00000089872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10202,cg21222571,0.0000169,0.00000287,5.885776095,1.03E-08,gain,yes,0.00000281,0.00000488,0.574836671,0.5658187,pos,ns,0.003391566,0.001429915,2.371866218,0.018308991,pos,ns,1.73733558,-0.0000895,0.0000492,-1.820953864,0.06957775,neg,ns,0.022132376,Hoxa10,Hoxa10_Intron,6,52233477,52233526,52233525,52233526,50,+,TCGTAAACTCGAACTTCGCCGGTTAATGGGCTTATTTATTGGCGCTGGCG,"Intron (Hoxa10-202/Hoxa10, intron 1 of 1)",6,52231197,52234939,3743,2,Hoxa10-202,1413,Hoxa10-202;Hoxa10-203;Hoxa10-201;Hoxa10-204;Hoxa9-203;Hoxa9-204;Hoxa9-205,Hoxa10;Hoxa10;Hoxa10;Hoxa10;Hoxa9;Hoxa9;Hoxa9,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,7,15395,ENSMUSG00000000938,mapped to different genes,6,52233395,52233615,221,*,221,16,0.533936652,1.052380952,0.07239819,2.61E-10,CpGisland,TRUE,U13,Hc-P
21569,cg12121354,0.0000235,0.0000194,1.215608543,0.225059,gain,ns,0.0000189,0.0000329,0.574820913,0.565829345,pos,ns,-0.016818906,0.009639726,-1.744749481,0.082019476,neg,ns,1.086083012,0.000761079,0.000331509,2.295797998,0.022354603,pos,ns,0.890456539,Itpr1,Itpr1_Exon,6,108381309,108381358,108381309,108381310,50,-,CGGCAGAGATTGACACATTTGTCAGCCTGGTGCGAAAGAACAGGGAGCCC,"Exon (Itpr1-201/Itpr1, exon 18 of 62)",6,108213096,108551109,338014,1,Itpr1-201,168213,Itpr1-201;Itpr1-205;Itpr1-209;Itpr1-208,Itpr1;Itpr1;Itpr1;Itpr1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,5,16438,ENSMUSG00000030102,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12507,cg22457882,-0.00000199,0.00000777,-0.255985651,0.798131696,loss,ns,-0.00000759,0.0000132,-0.574810655,0.565836274,neg,ns,-0.001386713,0.003868643,-0.35844936,0.720251034,neg,ns,0.14251611,-0.0000189,0.000133042,-0.142117822,0.887079259,neg,ns,0.806433804,Adcy8,Adcy8_Exon,15,64767842,64767891,64767890,64767891,50,+,AGAATGGCTTGATATGCTCTCTTCTCAATTTATCGCCACTCCGCAAGTCG,"Exon (Adcy8-201/Adcy8, exon 8 of 18)",15,64697084,64922296,225213,2,Adcy8-201,154405,Adcy8-201;Adcy8-202,Adcy8;Adcy8,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,11514,ENSMUSG00000022376,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10433,cg08885324,-0.00000789,0.00000162,-4.857187178,0.00000189,loss,ns,-0.00000159,0.00000276,-0.574587601,0.565986966,neg,ns,-0.001790229,0.000808462,-2.214363136,0.027531008,neg,ns,1.560177892,0.0000626,0.0000278,2.252281842,0.025003875,pos,ns,0.958839887,Slc44a1,Slc44a1_fiveUTR,4,53536345,53536394,53536345,53536346,50,+,CGCTGTGCTCCTGTGAACATTTCCTGCTATGCCAAGTTTGCAGAGGCCCT,5' UTR,4,53440413,53550200,109788,1,Slc44a1-203,95932,Slc44a1-203;Slc44a1-201;Slc44a1-205;Slc44a1-204;Slc44a1-202,Slc44a1;Slc44a1;Slc44a1;Slc44a1;Slc44a1,0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,3,100434,ENSMUSG00000028412,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3360,cg24594723,-0.00000395,0.0000026,-1.521902871,0.129052781,loss,ns,-0.00000253,0.00000441,-0.574305377,0.566177659,neg,ns,-0.002092614,0.00129304,-1.618367187,0.106600436,neg,ns,0.972241021,0.0000723,0.0000445,1.625235126,0.105128654,pos,ns,0.908176647,Srrm2,Srrm2_Exon,17,23819808,23819857,23819856,23819857,50,-,GTGACTCGCAGAAGGTCCAGATCCAGGACTCCACCAGTAACCAGGAGGCG,"Exon (Srrm2-210/Srrm2, exon 11 of 15)",17,23803187,23824736,21550,1,Srrm2-210,16621,Elob-201;Elob-205;Elob-202;Elob-203;Elob-206;Elob-207;Elob-204;Srrm2-210;Srrm2-201;Srrm2-207;Srrm2-205;Srrm2-204;Srrm2-209,Elob;Elob;Elob;Elob;Elob;Elob;Elob;Srrm2;Srrm2;Srrm2;Srrm2;Srrm2;Srrm2,9279;9241;9226;8946;8954;8974;9257;0;0;7908;0;-1530;-3668,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,13,75956,ENSMUSG00000039218,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16205,cg14551571,0.00000916,0.00000169,5.432567635,0.000000113,gain,yes,-0.00000164,0.00000286,-0.574286723,0.566190264,neg,ns,0.001049599,0.000839143,1.250797782,0.21195147,pos,ns,0.673763567,0.0000016,0.0000289,0.055463822,0.95580468,pos,ns,0.045388994,Vsx2,Vsx2_Intron,12,84590060,84590109,84590108,84590109,50,+,GTGTCAAAGGCGCCCCATATATCTGCAGATTGAAATCAAATTCTTCGCCG,"Intron (Vsx2-201/Vsx2, intron 3 of 4)",12,84569762,84595457,25696,1,Vsx2-201,20298,Vsx2-201;Vsx2-202,Vsx2;Vsx2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,20,12677,ENSMUSG00000021239,conserved gene and region,12,84590042,84590334,293,*,293,26,0.56996587,1.09265634,0.088737201,1.04E-18,CpGisland,TRUE,U2,Pr-W
3717,cg00149440,0.000041,0.0000134,3.071306827,0.002320089,gain,ns,-0.000013,0.0000227,-0.574273234,0.566199379,neg,ns,0.013841404,0.006646069,2.082645206,0.038103103,pos,ns,1.419039656,-0.00016573,0.000228558,-0.725111475,0.468930624,neg,ns,0.680565658,Pou2f2,Pou2f2_Intron,7,25134826,25134875,25134826,25134827,50,+,CGCTCATATTTCTCGCCGGATCGATACGTTTGACTCCCGACAAGACAATA,"Intron (Pou2f2-208/Pou2f2, intron 2 of 4)",7,25120618,25179726,59109,2,Pou2f2-208,44851,Pou2f2-203;Pou2f2-209;Pou2f2-201;Pou2f2-206;Pou2f2-204;Pou2f2-205;Pou2f2-202;Pou2f2-210;Pou2f2-208,Pou2f2;Pou2f2;Pou2f2;Pou2f2;Pou2f2;Pou2f2;Pou2f2;Pou2f2;Pou2f2,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,29,18987,ENSMUSG00000008496,mapped to different genes,7,25134752,25134975,224,*,224,23,0.629464286,1.037872683,0.102678571,4.08E-18,CpGisland,TRUE,U13,Hc-P
20421,cg22747076,0.0000784,0.00000659,11.88591946,4.24E-27,gain,yes,-0.00000643,0.0000112,-0.574234253,0.56622572,neg,ns,0.001294297,0.003281674,0.3944015,0.693555824,pos,ns,0.158918577,0.000114167,0.000112857,1.011609286,0.312513821,pos,ns,0.146526631,Hoxc4,Hoxc4_Exon,15,103034841,103034890,103034889,103034890,50,+,CCAGGGAATCGGGATTCCAGCATCACCACCAGGAGCTGTACCCACCACCG,"Exon (Hoxc4-202/Hoxc4, exon 2 of 4)",15,103018934,103036405,17472,1,Hoxc4-202,15907,Hoxc4-202;Hoxc4-201,Hoxc4;Hoxc4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,91,15423,ENSMUSG00000075394,conserved gene and region,15,103034736,103035107,372,*,372,27,0.626344086,0.794494542,0.072580645,4.60E-17,CpGisland,TRUE,NA,NRS
21061,cg19259664,-0.00000384,0.00000227,-1.685846408,0.092831569,loss,ns,-0.00000222,0.00000386,-0.57406734,0.566338519,neg,ns,-0.003124227,0.001132243,-2.759325713,0.006136479,neg,ns,2.212080724,0.0000563,0.0000389,1.445421199,0.14934974,pos,ns,0.956234034,Vrk1,Vrk1_Intergenic_downstream,12,106203657,106203706,106203705,106203706,50,+,AAGGGACTTTAATCAAAAAATCCGCTGGCCTGGAAACGTGACGCACTCCG,Distal Intergenic,12,106030717,106075409,44693,1,Vrk1-204,172940,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,29,37,22367,ENSMUSG00000021115,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16135,cg21711993,-0.0000055,0.00000145,-3.787463214,0.000182775,loss,ns,-0.00000142,0.00000247,-0.573961922,0.566409766,neg,ns,0.001049138,0.000723363,1.450361584,0.147968737,pos,ns,0.829830033,-0.000053,0.0000249,-2.131710143,0.033816795,neg,ns,0.962662503,Aatf,Aatf_Intron,11,84482106,84482155,84482154,84482155,50,-,AACAATAAGCCTTAACATTTAGGCCCTAACTTCTTCAACAAAGAATTGCG,"Intron (Aatf-201/Aatf, intron 5 of 12)",11,84422855,84513522,90668,2,Aatf-201,31367,Aatf-201;Aatf-202;Aatf-204,Aatf;Aatf;Aatf,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,10,56321,ENSMUSG00000018697,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2231,cg20919386,-0.00000174,0.00000253,-0.689069189,0.491295136,loss,ns,-0.00000247,0.00000429,-0.57394546,0.566420892,neg,ns,-0.001114051,0.001258273,-0.885381372,0.376637218,neg,ns,0.424076767,0.000033,0.0000433,0.762821639,0.446149841,pos,ns,0.93753686,Gm30341,Gm30341_Intergenic_upstream,3,18714282,18714331,18714282,18714283,50,-,CGTACTATAACAGCTTAGTGTTTATGATATGTGTGCTGTTAGTCAGTGAA,Distal Intergenic,3,18753077,18753365,289,1,Gm30341-201,-38795,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,17,23,102632201,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11673,cg06648775,-0.0000133,0.00000515,-2.575616737,0.010469222,loss,ns,0.00000502,0.00000875,0.57387432,0.566468975,pos,ns,0.002592732,0.002564835,1.010876713,0.312863793,pos,ns,0.504644693,-0.000342881,0.0000882,-3.887345567,0.000123991,neg,ns,0.866592602,Gm49852,Gm49852_Intergenic_downstream,17,59849048,59849097,59849096,59849097,50,-,CAGCCCATCAGATTAACCACGTAATAGACCCAGAAGCAGCTTTAAAGCCG,Distal Intergenic,17,59656595,59657060,466,1,Gm49852-201,192502,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,3,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26797,cg21032275,-0.00000404,0.00000762,-0.529514902,0.596827301,loss,ns,-0.00000743,0.0000129,-0.573873773,0.566469345,neg,ns,0.027195604,0.003793591,7.168828587,5.57E-12,pos,yes,11.25420663,-0.00114001,0.000130461,-8.738302039,1.51E-16,neg,yes,0.506508616,Sox12,Sox12_threeUTR,2,152394895,152394944,152394943,152394944,50,-,GGCAAGGTCGGGGCAAATACACTTTATTCAGTCCTGGCATCAGACTGGCG,3' UTR,2,152393611,152398063,4453,2,Sox12-202,3119,Sox12-202;Sox12-201,Sox12;Sox12,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,7,7,20667,ENSMUSG00000051817,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
921,cg19691778,0.0000105,0.00000414,2.530550826,0.011882977,gain,ns,0.00000403,0.00000703,0.573789461,0.566526333,pos,ns,0.003786097,0.002058628,1.839136225,0.066851405,pos,ns,1.174889461,-0.000148939,0.0000708,-2.103782442,0.036202733,neg,ns,0.082100692,Gdf6,Gdf6_Exon,4,9859330,9859379,9859330,9859331,50,+,CGCAGACGATCTCTCGCACACTCCTCTCCGGAGACAGAAGTATTTGTTTG,"Exon (Gdf6-201/Gdf6, exon 2 of 2)",4,9844372,9862345,17974,1,Gdf6-201,14958,Gdf6-201,Gdf6,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,11,242316,ENSMUSG00000051279,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
7075,cg03814557,0.000098,0.0000128,7.680304364,2.10E-13,gain,yes,-0.0000124,0.0000217,-0.573613149,0.566645514,neg,ns,0.007848638,0.006349802,1.236044665,0.217377714,pos,ns,0.662784982,-0.000059,0.000218369,-0.270376176,0.787050782,neg,ns,0.179229478,Hspa8,Hspa8_Intergenic_downstream,9,40822067,40822116,40822067,40822068,50,+,CGTTTACTTGTGATATGACAAATATTTCAGCCATTAGGATCTCTCCGTCT,Distal Intergenic,9,40804484,40810087,5604,1,Hspa8-210,17583,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,3,15481,ENSMUSG00000015656,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9885,cg21144985,-0.0000117,0.00000901,-1.295906656,0.195971663,loss,ns,-0.00000877,0.0000153,-0.57345697,0.566751097,neg,ns,-0.001972564,0.004482758,-0.440033663,0.660219361,neg,ns,0.180311744,-0.000278968,0.000154162,-1.809582061,0.071329054,neg,ns,0.446351859,Gm49908,Gm49908_Intergenic_upstream,17,51358461,51358510,51358509,51358510,50,-,GGCCAGAGGCAAAACAGCCGGGTATCTTAAAGCTGTGATGCTGTACCACG,Distal Intergenic,17,51236771,51237062,292,2,Gm49908-201,-121448,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,9,9,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7115,cg20408207,-0.0000316,0.00000642,-4.928329829,0.00000135,loss,yes,0.00000626,0.0000109,0.573418823,0.566776886,pos,ns,-0.006689433,0.003196275,-2.092883846,0.037172197,neg,ns,1.429781773,0.0000193,0.00010992,0.175842316,0.860532632,pos,ns,0.922431746,Gm4754,Gm4754_Intergenic_upstream,5,41061708,41061757,41061756,41061757,50,+,GAACAGGACATTAACATTTATGTCATGTTAACGTGCACCTAGGCATGGCG,Distal Intergenic,5,41342123,41342931,809,1,Gm4754-201,-280366,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,2,208522,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11889,cg06103844,0.0000947,0.0000158,6.005527075,5.33E-09,gain,yes,-0.0000154,0.0000268,-0.573378195,0.566804354,neg,ns,0.026544317,0.007851906,3.380620987,0.000815799,pos,ns,3.0884167,-0.000581894,0.000270026,-2.154952921,0.031935353,neg,ns,0.301242384,Gm34424,Gm34424_Intergenic_upstream,9,61491517,61491566,61491565,61491566,50,-,AATGCCAAAACAAATCTTGCCATAATTACCAGCAATCCTTTTCATTACCG,Distal Intergenic,9,61509723,61534247,24525,1,Gm34424-202,-18206,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,6,102637673,ENSMUSG00000111381,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
19678,cg17240018,0.0000112,0.00000444,2.522433673,0.012154975,gain,ns,0.00000432,0.00000754,0.57318811,0.566932877,pos,ns,-0.003014129,0.002207658,-1.365306553,0.173146649,neg,ns,0.76158591,0.0000515,0.0000759,0.677864623,0.498363155,pos,ns,0.918010045,1700017N19Rik,1700017N19Rik_fiveUTR,10,100594555,100594604,100594555,100594556,50,-,CGACACTGTGAAGAGGCCCTTGGCAGTGACACTGTGTGCTCATTATGGAG,5' UTR,10,100590484,100618143,27660,1,1700017N19Rik-210,4071,1700017N19Rik-210;1700017N19Rik-205;1700017N19Rik-203;1700017N19Rik-204;1700017N19Rik-209;1700017N19Rik-202;1700017N19Rik-201;1700017N19Rik-206;1700017N19Rik-207;4930430F08Rik-205,1700017N19Rik;1700017N19Rik;1700017N19Rik;1700017N19Rik;1700017N19Rik;1700017N19Rik;1700017N19Rik;1700017N19Rik;1700017N19Rik;4930430F08Rik,0;0;0;0;0;0;0;0;0;-4132,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,2,66605,ENSMUSG00000056912,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10425,cg16525542,0.00000298,0.00000197,1.508363361,0.132480003,gain,ns,-0.00000192,0.00000335,-0.573104013,0.566989742,neg,ns,0.002013927,0.000982472,2.049857411,0.04121936,pos,ns,1.384898759,0.0000121,0.0000338,0.356780965,0.721498516,pos,ns,0.090085896,Septin8,Septin8_fiveUTR,11,53519863,53519912,53519863,53519864,50,+,CGCCGCCGCCAAGGGGAGTTTCCAGGAAGTGGCCATATTGGATCCATTCA,Promoter (<=1kb),11,53519908,53541898,21991,1,Septin8-203,0,Septin8-205;Septin8-201;Septin8-204;Septin8-202;Septin8-203;Septin8-207,Septin8;Septin8;Septin8;Septin8;Septin8;Septin8,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,6,9,,NA,mapped to different genes,11,53519650,53519870,221,*,221,27,0.778280543,0.808536585,0.122171946,2.06E-23,CpGisland,TRUE,U1,Pr-A
9552,cg24293580,0.0000643,0.00000774,8.297686498,3.30E-15,gain,yes,-0.00000754,0.0000132,-0.573090927,0.566998591,neg,ns,0.010277589,0.003854242,2.666565327,0.008065199,pos,ns,2.093384899,-0.000277558,0.000132547,-2.094033002,0.037068939,neg,ns,0.534749806,Mbd5,Mbd5_Exon,2,49272758,49272807,49272806,49272807,50,-,TAATGACCTTGAATCCCCAGCTGTTGGGAGGTGTCCTGAACTCGGCATCG,"Exon (Mbd5-201/Mbd5, exon 5 of 10)",2,48949523,49316972,367450,1,Mbd5-203,323235,Mbd5-203;Mbd5-201;Mbd5-215;Mbd5-204;Mbd5-206,Mbd5;Mbd5;Mbd5;Mbd5;Mbd5,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,10,109241,ENSMUSG00000036792,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2400,cg11895464,0.00000867,0.00000949,0.913375703,0.361754792,gain,ns,0.00000924,0.0000161,0.573006813,0.567055471,pos,ns,0.003140915,0.0047252,0.664715733,0.506726493,pos,ns,0.295226389,-0.000165445,0.000162499,-1.018129611,0.309410287,neg,ns,0.783764152,Gm12025,Gm12025_Intergenic_downstream,11,19265492,19265541,19265492,19265493,50,+,CGGATTTCCTACTTGGAGTTGATAAGACAACGGCAAATGAAGATAACAAC,Distal Intergenic,11,19360926,19361069,144,2,Gm12025-201,95528,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,4,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27438,cg19410848,-0.0000119,0.00000287,-4.124873147,0.0000477,loss,ns,-0.0000028,0.00000488,-0.572997579,0.567061715,neg,ns,0.000964367,0.001430798,0.674006244,0.500809601,pos,ns,0.300327353,-0.0000459,0.0000492,-0.932723662,0.351688538,neg,ns,0.943586153,Pbx1,Pbx1_Intron,1,168182959,168183008,168183007,168183008,50,-,TCTGTGCGACATAGCTTGTCGCTATGAATTTTCATGCTAGTCAGGAGCCG,"Intron (Pbx1-208/Pbx1, intron 7 of 7)",1,168119364,168432270,312907,2,Pbx1-208,249262,Pbx1-208;Pbx1-205;Pbx1-206;Pbx1-201;Pbx1-202,Pbx1;Pbx1;Pbx1;Pbx1;Pbx1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,84,18514,ENSMUSG00000052534,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14881,cg17114460,-0.00000739,0.00000451,-1.639351929,0.102154368,loss,ns,0.00000439,0.00000766,0.572850024,0.567161503,pos,ns,0.000828187,0.002245032,0.368897524,0.712455928,pos,ns,0.147241996,-0.000064,0.0000772,-0.828870266,0.407815552,neg,ns,0.890245383,Flot2,Flot2_fiveUTR,11,78054768,78054817,78054816,78054817,50,-,TTTGCGTTTCTTGGCAGGATTTCCCTAGAGATTATGACGTTGCAGCCCCG,5' UTR,11,78037931,78060434,22504,1,Flot2-201,16837,Flot2-201;Flot2-205;Flot2-203;Flot2-202;Flot2-204,Flot2;Flot2;Flot2;Flot2;Flot2,0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,9,13,14252,ENSMUSG00000061981,conserved gene but different region,11,78054805,78054920,116,*,116,9,0.612068966,0.836538462,0.077586207,0.00000318,CpGisland,TRUE,NA,NRS
18172,cg20019402,-0.0000426,0.0000111,-3.848039703,0.000144587,loss,ns,0.0000108,0.0000188,0.572848092,0.567162809,pos,ns,-0.000810769,0.005506552,-0.147237075,0.883040609,neg,ns,0.054019324,-0.000117176,0.00018937,-0.618767974,0.53652363,neg,ns,0.614732486,Slc12a3,Slc12a3_Exon,8,94324336,94324385,94324336,94324337,50,+,CGAGCAGCGCATCCTCTTACCCGGCTATTTCACGACACCAGGGTTGCATC,Promoter (4-5kb),8,94329201,94366214,37014,1,Slc12a3-201,-4816,Slc12a3-201;Slc12a3-205;Slc12a3-204,Slc12a3;Slc12a3;Slc12a3,-4816;-4820;-4825,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,20497,ENSMUSG00000031766,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18725,cg19825429,-0.0000195,0.0000081,-2.410940956,0.016492911,loss,ns,-0.00000788,0.0000138,-0.572718095,0.567250729,neg,ns,-0.011598565,0.004029944,-2.878095852,0.004278771,neg,ns,2.368680953,0.000171631,0.000138589,1.238414105,0.216499524,pos,ns,0.648937007,Cdk5rap3,Cdk5rap3_Intergenic_downstream,11,96907189,96907238,96907237,96907238,50,-,CCAGCGACAAAGAGCCATGAATCAACTGCTCTGCTATGAAATTAAAATCG,Distal Intergenic,11,96907816,96908758,943,2,Cdk5rap3-210,1569,Cdk5rap3-201;Cdk5rap3-205;Cdk5rap3-210;Cdk5rap3-208;Cdk5rap3-202;Cdk5rap3-211;Cdk5rap3-209;Cdk5rap3-206;Cdk5rap3-207,Cdk5rap3;Cdk5rap3;Cdk5rap3;Cdk5rap3;Cdk5rap3;Cdk5rap3;Cdk5rap3;Cdk5rap3;Cdk5rap3,9258;9258;1520;5631;9154;8869;9191;9128;9176,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,5,80280,ENSMUSG00000018669,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16528,cg23208420,0.0000387,0.00000679,5.703151326,2.74E-08,gain,yes,-0.00000661,0.0000115,-0.572688499,0.567270747,neg,ns,0.00197093,0.003380738,0.582988075,0.56032517,pos,ns,0.251559869,-0.000127472,0.000116263,-1.096404998,0.273752568,neg,ns,0.077866435,Btbd11,Btbd11_Exon,10,85387512,85387561,85387512,85387513,50,+,CGGCACAACAGCTTTGACACTGTCAACACTGCCCTGGTGGAAGACTCCGA,Promoter (<=1kb),10,85386814,85660292,273479,1,Btbd11-203,698,Btbd11-203;Btbd11-201,Btbd11;Btbd11,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,13,13,74007,ENSMUSG00000020042,conserved gene and region,10,85387046,85387614,569,*,569,49,0.65202109,0.810258646,0.086115993,4.08E-34,CpGisland,TRUE,U3,Pr-B
3305,cg20725021,0.0000654,0.0000105,6.232525353,1.50E-09,gain,yes,-0.0000102,0.0000178,-0.572464386,0.567422339,neg,ns,0.010608181,0.005220018,2.032211437,0.042984511,pos,ns,1.366688011,-0.000335901,0.000179516,-1.871149568,0.062266167,neg,ns,0.125188565,Masp1,Masp1_fiveUTR,16,23520655,23520704,23520703,23520704,50,+,AGGTCCCTGTGTGTCTCTGGAATTGGCTGGCATTCTCCATTCAGGTCACG,Promoter (<=1kb),16,23449417,23520815,71399,2,Masp1-201,111,Masp1-201;Masp1-203;Masp1-204;Masp1-202;Rtp4-202,Masp1;Masp1;Masp1;Masp1;Rtp4,0;-5;-7;-59;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,1,17174,ENSMUSG00000022887,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
21655,cg01376725,0.00000142,0.00000235,0.603749259,0.546451888,gain,ns,-0.00000228,0.00000399,-0.572378196,0.567480643,neg,ns,-0.00028493,0.001168151,-0.243915267,0.807457789,neg,ns,0.092880172,0.0000191,0.0000402,0.476062243,0.634365364,pos,ns,0.960593383,Zfhx3,Zfhx3_fiveUTR,8,108792210,108792259,108792210,108792211,50,+,CGTACTGGGTGCAATGAAAGCTCCACGCAGGCCTTACCATGGAAGGCTGT,5' UTR,8,107942644,108961630,1018987,1,Zfhx3-204,849566,Zfhx3-204;Zfhx3-202;Zfhx3-201,Zfhx3;Zfhx3;Zfhx3,0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,11,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12502,cg16963526,-0.00000373,0.00000541,-0.688636663,0.491566973,loss,ns,0.00000526,0.00000919,0.572235028,0.567577497,pos,ns,0.001006712,0.002693169,0.373801964,0.708807177,pos,ns,0.149471894,0.0000842,0.0000926,0.908743717,0.364191359,pos,ns,0.936715102,Rab11a,Rab11a_fiveUTR,9,64726695,64726744,64726743,64726744,50,-,ATGATAACAATGTTACTATCAGCATGATCTCTCAGTTCTTTCAGCCATCG,Promoter (<=1kb),9,64716706,64726710,10005,2,Rab11a-205,0,Rab11a-208;Rab11a-204;Rab11a-209;Rab11a-205;Rab11a-203;Rab11a-207;Rab11a-206;Rab11a-201;Rab11a-202,Rab11a;Rab11a;Rab11a;Rab11a;Rab11a;Rab11a;Rab11a;Rab11a;Rab11a,0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,3,53869,ENSMUSG00000004771,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3265,cg25495551,-0.0000258,0.00000658,-3.916755798,0.000110432,loss,ns,-0.00000639,0.0000112,-0.57219001,0.567607954,neg,ns,-0.001275954,0.003274212,-0.389697985,0.697027478,neg,ns,0.156750101,-0.000206274,0.0001126,-1.831923165,0.067922198,neg,ns,0.922542349,Kcnma1,Kcnma1_Intron,14,23419004,23419053,23419004,23419005,50,-,CGGACTTGACATTTGCTCCAAGCCTGCTCTAATTCAAACCTCTGCTTGTT,"Intron (Kcnma1-207/Kcnma1, intron 18 of 27)",14,23289431,23803304,513874,2,Kcnma1-207,384251,Kcnma1-207;Kcnma1-210;Kcnma1-205;Kcnma1-201;Kcnma1-208;Kcnma1-209;Kcnma1-212;Kcnma1-204;Kcnma1-202;Kcnma1-211;Kcnma1-229;Kcnma1-234;Kcnma1-223;Kcnma1-214;Kcnma1-216;Kcnma1-219;Kcnma1-220;Kcnma1-224;Kcnma1-233;Kcnma1-236;Kcnma1-237;Kcnma1-213;Kcnma1-228;Kcnma1-203;Kcnma1-206;Kcnma1-221;Kcnma1-225;Kcnma1-226;Kcnma1-230;Kcnma1-235;Kcnma1-217,Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,41,16531,ENSMUSG00000063142,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17512,cg10919728,0.00000707,0.00000565,1.251343616,0.211752614,gain,ns,0.00000549,0.0000096,0.571910881,0.567796816,pos,ns,-0.003148074,0.002811324,-1.119783453,0.263672881,neg,ns,0.578934535,-0.000159277,0.0000967,-1.647443884,0.100480044,neg,ns,0.857421246,Iqsec1,Iqsec1_Exon,6,90664040,90664089,90664040,90664041,50,+,CGATCCCGCACTGCTGCGACGCCCTCGCTTCCCTGCCCAGAACATGCAAT,"Exon (Iqsec1-202/Iqsec1, exon 13 of 14)",6,90656088,90716529,60442,2,Iqsec1-202,52440,Iqsec1-202;Iqsec1-208;Iqsec1-201;Iqsec1-210;Iqsec1-206;Iqsec1-204,Iqsec1;Iqsec1;Iqsec1;Iqsec1;Iqsec1;Iqsec1,0;-1752;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,3,232227,ENSMUSG00000034312,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22751,cg23293834,0.0000769,0.0000121,6.363869109,7.07E-10,gain,yes,-0.0000117,0.0000205,-0.571814062,0.567862332,neg,ns,0.020511737,0.006011266,3.412216138,0.000729898,pos,ns,3.136737941,-0.000389162,0.000206727,-1.882492263,0.06070561,neg,ns,0.333693362,Cit,Cit_Exon,5,115908672,115908721,115908672,115908673,50,-,CGATGACACCTCCAATTTTGATGAACCAGAGAAGAATTCGTGGGTTTCAT,"Exon (Cit-215/Cit, exon 10 of 11)",5,115845278,115925702,80425,1,Cit-215,63394,Cit-215;Cit-214;Cit-212;Cit-201;Cit-202;Cit-203;Cit-207,Cit;Cit;Cit;Cit;Cit;Cit;Cit,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,9,12704,ENSMUSG00000029516,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12368,cg11243569,0.00000282,0.00000211,1.335740634,0.182613883,gain,ns,0.00000205,0.00000359,0.571755632,0.567901872,pos,ns,0.001745384,0.001050961,1.660749849,0.097774731,pos,ns,1.009773368,-0.0000418,0.0000361,-1.155239846,0.24888188,neg,ns,0.950187244,Klf7,Klf7_Exon,1,64042333,64042382,64042381,64042382,50,-,TGAAGGGCTTTGCACCTGTGTGTTTCCTGTAGTGCCTCGTGAGCTCATCG,"Exon (Klf7-202/Klf7, exon 3 of 4)",1,64029447,64121491,92045,2,Klf7-202,79109,Klf7-202;Klf7-201,Klf7;Klf7,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,21,93691,ENSMUSG00000025959,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13132,cg16594490,-0.0000108,0.0000092,-1.17454093,0.241079873,loss,ns,0.00000894,0.0000156,0.571684816,0.567949796,pos,ns,0.005946761,0.004580135,1.298381049,0.195121498,pos,ns,0.709694878,-0.0000466,0.00015751,-0.295603022,0.767731165,neg,ns,0.787342838,Dnah2,Dnah2_Promoter,11,69548207,69548256,69548255,69548256,50,+,AGGTAATCAAACATCTCGCTTTGCTAATTACTGCTCAATCCGATTAAACG,Promoter (<=1kb),11,69420809,69549108,128300,2,Dnah2-202,852,Dnah2-201;Dnah2-202;Dnah2-203,Dnah2;Dnah2;Dnah2,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,7,10,327954,ENSMUSG00000005237,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
9757,cg15680017,-0.000184699,0.0000261,-7.081632837,9.59E-12,loss,yes,0.0000253,0.0000443,0.571612376,0.567998821,pos,ns,0.041760829,0.012980978,3.217078859,0.001431924,pos,ns,2.844080019,-0.003473904,0.000446415,-7.781785804,1.07E-13,neg,yes,0.567906707,Trps1,Trps1_Intron,15,50666035,50666084,50666083,50666084,50,-,CTTCAAGACTGGAACACTTTCTTGGCATTGAAAGGGCATTTGATTCATCG,"Intron (Trps1-202/Trps1, intron 4 of 5)",15,50654752,50889691,234940,2,Trps1-202,223607,Trps1-202;Trps1-206;Trps1-204;Trps1-205;Trps1-207;Trps1-201,Trps1;Trps1;Trps1;Trps1;Trps1;Trps1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,36,83925,ENSMUSG00000038679,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25529,cg07635837,-0.0000107,0.00000451,-2.367414885,0.018526647,loss,ns,-0.00000438,0.00000766,-0.571317101,0.568198674,neg,ns,-0.002027371,0.002244309,-0.903338662,0.367047586,neg,ns,0.435277627,0.0000452,0.0000772,0.585764451,0.558460015,pos,ns,0.519623764,Ebf3,Ebf3_Intron,7,137197520,137197569,137197520,137197521,50,-,CGTCCTCAGCACCCAGCAGAGAGCCTGGTACATAGTAGGTGCTCAGTAAA,"Intron (Ebf3-204/Ebf3, intron 15 of 15)",7,137193673,137314445,120773,2,Ebf3-204,116876,Ebf3-204;Ebf3-201;Ebf3-202;Ebf3-203;Ebf3-208;Ebf3-205,Ebf3;Ebf3;Ebf3;Ebf3;Ebf3;Ebf3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,62,84,13593,ENSMUSG00000010476,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12382,cg20179538,0.0000266,0.0000165,1.605569321,0.109386728,gain,ns,0.000016,0.0000281,0.571175693,0.568294396,pos,ns,0.035493256,0.008231345,4.311963139,0.0000218,pos,ns,4.662141928,-0.00068345,0.000283075,-2.414376081,0.01634113,neg,ns,0.550625383,Fign,Fign_Intron,2,64079894,64079943,64079942,64079943,50,+,TCATGGTCCTTCATCTTTGCAGTAGAGCAAACACGTCTCTCAGTATAGCG,"Intron (Fign-203/Fign, intron 2 of 2)",2,63971507,64098012,126506,2,Fign-203,18069,Fign-203;Fign-201;Fign-202;Fign-204,Fign;Fign;Fign;Fign,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,84,60344,ENSMUSG00000075324,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23715,cg11527778,0.0000126,0.00000314,4.002937781,0.0000783,gain,ns,0.00000305,0.00000534,0.571073065,0.568363872,pos,ns,0.0000728,0.001563763,0.04657138,0.962884829,pos,ns,0.016425656,-0.0000514,0.0000538,-0.95572658,0.339955081,neg,ns,0.929343397,Hivep3,Hivep3_Exon,4,120122936,120122985,120122984,120122985,50,-,GAGTGTGGAATTCGCTGCAAGAAGCCCAGCATGCTGAAGAAACACATCCG,"Exon (Hivep3-202/Hivep3, exon 6 of 9)",4,119814495,120138045,323551,1,Hivep3-202,308441,Hivep3-202;Hivep3-209,Hivep3;Hivep3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,8,16656,ENSMUSG00000028634,conserved gene and region,4,120122884,120123003,120,*,120,9,0.533333333,1.071428571,0.075,0.0000042,CpGisland,TRUE,NA,NRS
11694,cg24770600,-0.0000613,0.0000501,-1.223599164,0.222032701,loss,ns,-0.0000486,0.0000851,-0.570982161,0.568425415,neg,ns,0.026835863,0.024945451,1.075781821,0.282861377,pos,ns,0.548426349,-0.002980413,0.000857872,-3.474192775,0.000585367,neg,ns,0.176496508,Baz2b,Baz2b_Exon,2,60037404,60037453,60037404,60037405,50,+,CGGAGAGGGTCAAATAGTACTTCCTGCAGTTTACACATCTTGATTTCCTG,"Exon (Gm13572-201/Gm13572-201, exon 1 of 2)",2,59899363,60125697,226335,2,Baz2b-202,88244,Baz2b-202;Baz2b-207;Baz2b-203;Baz2b-214,Baz2b;Baz2b;Baz2b;Baz2b,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,9,407823,ENSMUSG00000026987,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26106,cg08468878,-0.000000158,0.00000036,-0.43949112,0.660611922,loss,ns,0.000000349,0.000000612,0.570886604,0.568490111,pos,ns,-0.00034785,0.000179238,-1.940714339,0.05319926,neg,ns,1.274094407,0.00000967,0.00000616,1.56940086,0.11757468,pos,ns,0.990537686,Dcx,Dcx_Exon,X,143931069,143931118,143931117,143931118,50,-,CTGCGAAAACGGTCAGAGGACACAGCGTACACAATCCCCTTGAAGTAGCG,"Exon (Dcx-201/Dcx, exon 2 of 7)",20,143855842,143933311,77470,2,Dcx-201,2193,Dcx-201;Dcx-203;Dcx-202;Dcx-204;Dcx-206;Dcx-205,Dcx;Dcx;Dcx;Dcx;Dcx;Dcx,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,8,13193,ENSMUSG00000031285,conserved gene and region,X,143930980,143931139,160,*,160,10,0.49375,1.025641026,0.0625,0.00000493,CpGisland,TRUE,NA,NRS
22281,cg10323846,-0.00000221,0.00000225,-0.982252661,0.326741357,loss,ns,-0.00000218,0.00000382,-0.570824839,0.56853193,neg,ns,-0.000198802,0.001118236,-0.177782143,0.859010184,neg,ns,0.066001688,0.0000485,0.0000385,1.26220605,0.207823406,pos,ns,0.96345401,Tead1,Tead1_Exon,7,112859069,112859118,112859069,112859070,50,-,CGTCAAGCCTTTTGTGCAGCAGGCCTACCCCATCCAGCCAGCGGTCACAG,"Exon (Tead1-203/Tead1, exon 7 of 12)",7,112679318,112899459,220142,1,Tead1-203,179751,Tead1-203;Tead1-216;Tead1-217;Tead1-201;Tead1-204;Tead1-206;Tead1-202;Tead1-211;Tead1-207;Tead1-210;Tead1-212;Tead1-208,Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,16,21676,ENSMUSG00000055320,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4075,cg02874213,-0.0000129,0.00000837,-1.542759743,0.123909241,loss,ns,0.00000811,0.0000142,0.570700357,0.568616218,pos,ns,-0.001572599,0.004163656,-0.377696529,0.705914512,neg,ns,0.15124789,-0.000149004,0.000143188,-1.04061925,0.2988632,neg,ns,0.679468172,Gm45647,Gm45647_Intergenic_upstream,8,26719038,26719087,26719086,26719087,50,+,AGACATAAACTGAGCCACAATTTTCCTTCTTTGATTTGCTTTTAATCTCG,Distal Intergenic,8,26780315,26780509,195,1,Gm45647-201,-61228,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,46,62,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11119,cg04620020,-0.00000324,0.0000034,-0.95144079,0.342121871,loss,ns,-0.0000033,0.00000578,-0.570648576,0.568651282,neg,ns,-0.001616257,0.001692349,-0.955037367,0.340302932,neg,ns,0.468134309,0.00000435,0.0000582,0.074814288,0.940410728,pos,ns,0.926970822,Lingo1,Lingo1_Intron,9,56658196,56658245,56658196,56658197,50,+,CGCCTCCTTTACTGTTCTGATGCACCAAGACGTGACAAAAATGTGTCAGA,"Intron (Lingo1-201/Lingo1, intron 2 of 3)",9,56618475,56685253,66779,2,Lingo1-201,27008,Lingo1-201;Lingo1-206;Lingo1-205;Lingo1-207,Lingo1;Lingo1;Lingo1;Lingo1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,25,235402,ENSMUSG00000049556,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18647,cg08181518,-0.0000226,0.0000113,-2.007868786,0.0455246,loss,ns,0.0000109,0.0000191,0.570552298,0.568716479,pos,ns,0.02868988,0.005604227,5.119328794,0.000000539,pos,ns,6.268234587,-0.00106325,0.000192729,-5.516814584,7.29E-08,neg,yes,0.655560016,Skap1,Skap1_Intron,11,96576801,96576850,96576801,96576802,50,+,CGGGTCAGCTTCTGTTCACACATTTAGCCTTCACCTTGCAAAGAAAGGGA,"Intron (Skap1-204/Skap1, intron 4 of 12)",11,96464593,96758941,294349,1,Skap1-204,112208,Skap1-204;Skap1-203;Skap1-209;Skap1-201;Skap1-205;Skap1-206;Skap1-208,Skap1;Skap1;Skap1;Skap1;Skap1;Skap1;Skap1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,40,46,78473,ENSMUSG00000057058,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5572,cg22600157,0.000000726,0.00000926,0.078350921,0.937599462,gain,ns,-0.00000898,0.0000157,-0.57046649,0.568774588,neg,ns,0.004002993,0.004610618,0.868211738,0.385950049,pos,ns,0.4134689,-0.000175636,0.000158559,-1.10770461,0.268848128,neg,ns,0.847593983,Hdac9,Hdac9_Intron,12,34279119,34279168,34279119,34279120,50,-,CGATTCAGTTCCAAGTTATAAATGACAACTCAAAAGCCGCAGAAGCGTTT,"Intron (Hdac9-205/Hdac9, intron 15 of 24)",12,34047580,34528328,480749,2,Hdac9-205,249160,Hdac9-205;Hdac9-204;Hdac9-206;Hdac9-210;Hdac9-207,Hdac9;Hdac9;Hdac9;Hdac9;Hdac9,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,19,31,79221,ENSMUSG00000004698,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24913,cg23685594,0.0000692,0.000013,5.34486512,0.000000176,gain,yes,-0.0000125,0.000022,-0.570168629,0.568976324,neg,ns,0.026162118,0.006445882,4.058733926,0.0000625,pos,ns,4.203990203,-0.000635566,0.000221673,-2.867127021,0.004425873,neg,ns,0.295663465,F830045P16Rik,F830045P16Rik_Intron,2,129529847,129529896,129529895,129529896,50,+,GCCCACTTTGTCGAGTCAAAAGACTAACTTGTTTCTTTTTCACCAAAACG,"Intron (F830045P16Rik-201/F830045P16Rik, intron 1 of 6)",2,129458359,129536602,78244,2,F830045P16Rik-201,6706,F830045P16Rik-201,F830045P16Rik,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,2,228592,ENSMUSG00000043727,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24810,cg23536970,-0.0000119,0.00000329,-3.615372422,0.000349914,loss,ns,0.00000319,0.0000056,0.570140661,0.568995268,pos,ns,-0.001432532,0.001639519,-0.873751562,0.382929914,neg,ns,0.416880706,0.00000224,0.0000564,0.039783362,0.96829145,pos,ns,0.952424535,Ikzf4,Ikzf4_threeUTR,10,128634131,128634180,128634179,128634180,50,-,CAAAAGGGTCTCTGAAGCCATGGCAGCCCATGTGGATAGTGAACATGACG,3' UTR,10,128630843,128645991,15149,2,Ikzf4-201,11811,Ikzf4-201;Ikzf4-209;Ikzf4-210;Ikzf4-203;Ikzf4-208;Ikzf4-204,Ikzf4;Ikzf4;Ikzf4;Ikzf4;Ikzf4;Ikzf4,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,6,22781,ENSMUSG00000002578,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22775,cg19828715,0.000046,0.00000431,10.67280776,7.44E-23,gain,yes,0.00000418,0.00000733,0.570126032,0.569005177,pos,ns,0.001867493,0.002147001,0.869814691,0.38507467,pos,ns,0.414455048,0.000307886,0.0000738,4.169908542,0.0000396,pos,ns,0.056931127,Dmbx1,Dmbx1_Intron,4,115936797,115936846,115936845,115936846,50,+,TTAGATATTTATTGCTGTCATTTACATGGGCACTGCGGGGCGGCCGAGCG,"Intron (Dmbx1-203/Dmbx1, intron 1 of 4)",4,115915119,115939926,24808,2,Dmbx1-203,3080,Dmbx1-203;Dmbx1-202,Dmbx1;Dmbx1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,42,140477,ENSMUSG00000028707,conserved gene but different region,4,115936830,115936851,22,*,22,6,0.909090909,1.450549451,0.272727273,0.000000108,CpGisland,TRUE,U13,Hc-P
3098,cg09878190,0.00000496,0.0000014,3.544258787,0.00045438,gain,ns,-0.00000135,0.00000238,-0.570026793,0.569072399,neg,ns,0.001722336,0.000696241,2.473765986,0.013905112,pos,ns,1.856825502,-0.0000442,0.0000239,-1.844792297,0.066021553,neg,ns,0.007546675,Lhfpl3,Lhfpl3_Exon,5,22746366,22746415,22746366,22746367,50,+,CGACGGCGTGGACACCCCGCAAGCCGGCTATTTCGGGCTCTTCCACTACT,Promoter (<=1kb),5,22746059,23275597,529539,1,Lhfpl3-202,307,Lhfpl3-202,Lhfpl3,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,11,269629,ENSMUSG00000106379,conserved gene and region,5,22746271,22746758,488,*,488,33,0.610655738,0.733834587,0.067622951,9.76E-20,CpGisland,TRUE,U3,Pr-B
2646,cg06062143,0.0000233,0.00000572,4.06539595,0.0000608,gain,ns,-0.00000554,0.00000972,-0.569967018,0.569112891,neg,ns,-0.001380985,0.00284662,-0.485131692,0.627925581,neg,ns,0.202091824,0.000135557,0.0000979,1.38471514,0.167135383,pos,ns,0.830370615,Araf,Araf_threeUTR,X,20860497,20860546,20860545,20860546,50,+,CAAGAAGCACAGAATTCTGCTGGGCCTTTGCTTGTTTATTTTGTTTCCCG,3' UTR,20,20797814,20860497,62684,1,Araf-207,62683,Araf-207;Araf-201;Araf-210;Araf-206;Syn1-202;Syn1-201,Araf;Araf;Araf;Araf;Syn1;Syn1,0;0;11933;2774;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,11836,ENSMUSG00000001127,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23656,cg20026006,-0.0000104,0.0000032,-3.260188873,0.001237243,loss,ns,0.00000309,0.00000543,0.569913695,0.569149014,pos,ns,0.002510994,0.001590824,1.578423956,0.115488077,pos,ns,0.937462851,-0.0000635,0.0000547,-1.161003154,0.246533843,neg,ns,0.921698495,Scn5a,Scn5a_Exon,9,119543089,119543138,119543137,119543138,50,+,TGATTTTCACCTGAAATGACTGATATAGTTTTCAGGGCCCGGAGGACTCG,"Exon (Scn5a-201/Scn5a, exon 5 of 27)",9,119483408,119562678,79271,2,Scn5a-201,19540,Scn5a-201;Scn5a-202;Scn5a-203,Scn5a;Scn5a;Scn5a,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,6,20271,ENSMUSG00000032511,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7539,cg05771545,-0.0000269,0.0000048,-5.605078299,0.000000046,loss,yes,0.00000465,0.00000816,0.569715837,0.569283058,pos,ns,0.001611213,0.002390685,0.673954516,0.500842443,pos,ns,0.300298875,-0.000130193,0.0000822,-1.583563817,0.114312622,neg,ns,0.909594111,Sobp,Sobp_Intron,10,43074766,43074815,43074766,43074767,50,-,CGGGAATCCAGAAATAACAACAATATTAAGAAGTTTGTTTAAATACGCAG,"Intron (Sobp-201/Sobp, intron 4 of 6)",10,43002500,43174530,172031,2,Sobp-201,99715,Sobp-201,Sobp,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,19,109205,ENSMUSG00000038248,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16959,cg02878597,-0.0000188,0.0000122,-1.538752064,0.124884901,loss,ns,-0.0000118,0.0000207,-0.569702836,0.569291866,neg,ns,-0.002735386,0.006065514,-0.450973503,0.652323929,neg,ns,0.18553669,0.000233721,0.000208593,1.120468938,0.263381267,pos,ns,0.865007598,Zfp423,Zfp423_Intron,8,87668476,87668525,87668476,87668477,50,-,CGAACAGATGGCCTGTCTTAAAGGCTCATATGTTCGCTAGTTTGCACTTC,"Intron (Zfp423-203/Zfp423, intron 5 of 5)",8,87661810,87804439,142630,2,Zfp423-203,135914,Zfp423-203;Zfp423-202;Zfp423-201,Zfp423;Zfp423;Zfp423,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,42,53,94187,ENSMUSG00000045333,conserved gene and region,8,87668448,87668570,123,*,123,10,0.528455285,1.171428571,0.081300813,0.000000457,CpGisland,TRUE,NA,NRS
9925,cg15201333,-5.88E-08,0.00000034,-0.172811175,0.862912626,loss,ns,-0.000000329,0.000000578,-0.5695061,0.569425166,neg,ns,-0.000521618,0.000169382,-3.079547706,0.002258724,neg,ns,2.646136861,0.0000123,0.00000583,2.11878547,0.034903649,pos,ns,0.991515871,Hnrnpab,Hnrnpab_Exon,11,51601750,51601799,51601798,51601799,50,+,TGTAGTCGTAGCCGGGGCCGTAGCCGTAATAGCCATAGGGCGAGTAGTCG,"Exon (Hnrnpab-202/Hnrnpab, exon 7 of 7)",11,51600100,51606847,6748,2,Hnrnpab-201,5048,Hnrnpab-201;Hnrnpab-202;Hnrnpab-203;Phykpl-202;Phykpl-206;Phykpl-201;Phykpl-204;Phykpl-208,Hnrnpab;Hnrnpab;Hnrnpab;Phykpl;Phykpl;Phykpl;Phykpl;Phykpl,0;0;0;0;0;16961;16947;2483,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,15384,ENSMUSG00000020358,conserved gene and region,11,51601756,51601862,107,*,107,11,0.654205608,0.961601307,0.102803738,7.87E-09,CpGisland,TRUE,U10,Tr-S
4291,cg12505751,-0.00000229,0.0000031,-0.736867016,0.461760518,loss,ns,0.000003,0.00000527,0.569399754,0.569497227,pos,ns,0.001282276,0.001545265,0.829810003,0.40728476,pos,ns,0.390101841,-0.0000838,0.0000531,-1.575995645,0.116046728,neg,ns,0.939523029,Olfm1,Olfm1_Exon,2,28214752,28214801,28214752,28214753,50,-,CGCCTATGACTACGATGAACTTCAGAGCAGAGTGTCCAATCTTGAAGAAA,"Exon (Olfm1-204/Olfm1, exon 4 of 6)",2,28192992,28230462,37471,1,Olfm1-204,21760,Olfm1-205;Olfm1-204;Olfm1-202;Olfm1-203;Olfm1-201,Olfm1;Olfm1;Olfm1;Olfm1;Olfm1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,56177,ENSMUSG00000026833,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8275,cg09853290,0.0000267,0.00000649,4.12100129,0.0000485,gain,ns,0.00000628,0.000011,0.56936867,0.569518291,pos,ns,0.003393377,0.00323009,1.050551635,0.294282828,pos,ns,0.53123508,0.0000366,0.000111083,0.329631295,0.74190119,pos,ns,0.724742091,Zcchc7,Zcchc7_Intron,4,44918164,44918213,44918164,44918165,50,-,CGATAGCATTACAAGGTATTTGTGGCAGTGCTTGTTTCAGTTTTCAGAGC,"Intron (Zcchc7-203/Zcchc7, intron 6 of 8)",4,44756568,44932203,175636,1,Zcchc7-203,161596,Zcchc7-203;Zcchc7-202;Zcchc7-208,Zcchc7;Zcchc7;Zcchc7,0;0;-4905,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,27,27,319885,ENSMUSG00000035649,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25662,cg14546236,0.0000014,0.00000209,0.67115808,0.502619605,gain,ns,-0.00000202,0.00000355,-0.569364987,0.569520788,neg,ns,-0.001404525,0.00103956,-1.351075945,0.177656344,neg,ns,0.750419279,0.0000285,0.0000358,0.796601439,0.426292182,pos,ns,0.96321295,Zkscan1,Zkscan1_Exon,5,138101327,138101376,138101327,138101328,50,+,CGAGAAAAGCCCTACAAGTGCACTAAGTGTGGCAAGGCCTTCACCCGCAG,"Exon (Zkscan1-201/Zkscan1, exon 6 of 6)",5,138085084,138107822,22739,1,Zkscan1-201,16243,Zkscan1-201;Zkscan1-202;Zkscan1-204;Zkscan1-203,Zkscan1;Zkscan1;Zkscan1;Zkscan1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,74570,ENSMUSG00000029729,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12431,cg01142419,0.000000639,0.0000017,0.376844701,0.706546839,gain,ns,0.00000164,0.00000288,0.569346271,0.56953347,pos,ns,0.001374815,0.000844249,1.628447632,0.104445808,pos,ns,0.981108984,-0.0000365,0.000029,-1.258059642,0.209316947,neg,ns,0.954577397,Tbc1d1,Tbc1d1_Exon,5,64263531,64263580,64263531,64263532,50,+,CGGCTTTCATTTTGTCTGTTACGTGTTTCAGTGCACAAATGAGGCTCTGG,"Exon (Tbc1d1-201/Tbc1d1, exon 5 of 22)",5,64159451,64351486,192036,1,Tbc1d1-201,104080,Tbc1d1-201;Tbc1d1-204;Tbc1d1-202;Tbc1d1-203,Tbc1d1;Tbc1d1;Tbc1d1;Tbc1d1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,57915,ENSMUSG00000029174,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12401,cg14012259,0.0000355,0.00000524,6.773561273,6.32E-11,gain,yes,-0.00000507,0.00000891,-0.569235088,0.569608817,neg,ns,0.010150877,0.002609491,3.889983923,0.000122713,pos,ns,3.911110935,-0.000288704,0.0000897,-3.21711173,0.001431765,neg,ns,0.092378846,Fign,Fign_Promoter,2,64097245,64097294,64097293,64097294,50,-,TATACCATTAAATTATACATCTTTCTCTCCCGTTCCTTGCCAACAATACG,Promoter (<=1kb),2,63971507,64098012,126506,2,Fign-203,718,Fign-203;Fign-201;Fign-202;Fign-204,Fign;Fign;Fign;Fign,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,12,84,60344,ENSMUSG00000075324,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
19360,cg27419618,0.000013,0.00000457,2.853371661,0.004616849,gain,ns,0.00000442,0.00000776,0.569169369,0.569653355,pos,ns,0.001870517,0.002273907,0.822600318,0.411367607,pos,ns,0.385769909,0.0000385,0.0000782,0.491977252,0.623083622,pos,ns,0.91084962,Foxp1,Foxp1_Intron,6,99097316,99097365,99097364,99097365,50,+,AAAGCAACGGCAGCTTGATAGACATTCAAGTCTGAAAGCAAATCCAGACG,"Intron (Foxp1-206/Foxp1, intron 3 of 17)",6,98925338,99266515,341178,2,Foxp1-206,169150,Foxp1-206;Foxp1-204;Foxp1-220;Foxp1-201;Foxp1-205;Foxp1-207;Foxp1-208;Foxp1-226;Foxp1-228;Foxp1-221;Foxp1-222;Foxp1-218;Foxp1-223,Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,87,108655,ENSMUSG00000030067,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
6471,cg11411501,-0.00000406,0.00000196,-2.072670423,0.039029104,loss,ns,-0.00000189,0.00000333,-0.569164626,0.56965657,neg,ns,-0.000888492,0.000974124,-0.912092942,0.362428533,neg,ns,0.440777618,0.00000626,0.0000335,0.186972071,0.851804837,pos,ns,0.950057042,Inpp4a,Inpp4a_Exon,1,37383327,37383376,37383375,37383376,50,+,ATTTCTGTGCAGATTGCAGTCCCCCTCCTGAAGAGTCCAGCCCAGGTACG,"Exon (Inpp4a-201/Inpp4a, exon 18 of 26)",1,37299891,37410736,110846,1,Inpp4a-201,83436,Inpp4a-201;Inpp4a-209;Inpp4a-205;Inpp4a-207;Inpp4a-206;Inpp4a-213;Inpp4a-208;Inpp4a-202;Inpp4a-203;Inpp4a-211;Inpp4a-204,Inpp4a;Inpp4a;Inpp4a;Inpp4a;Inpp4a;Inpp4a;Inpp4a;Inpp4a;Inpp4a;Inpp4a;Inpp4a,0;0;0;0;0;0;0;0;0;0;5655,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,9,269180,ENSMUSG00000026113,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7569,cg14412072,0.0000327,0.00000661,4.946733146,0.00000124,gain,yes,0.00000639,0.0000112,0.569015778,0.569757452,pos,ns,0.022560464,0.003290016,6.857251054,3.81E-11,pos,yes,10.41927141,-0.000470595,0.000113143,-4.159276819,0.0000414,neg,ns,0.890577582,Zbtb20,Zbtb20_Intron,16,43277065,43277114,43277065,43277066,50,-,CGGCTGCCATTAGGGAAATGGGCATCATTCTTATTGATCCAGCATGGGCT,"Intron (Zbtb20-209/Zbtb20, intron 5 of 7)",16,42875881,43463175,587295,1,Zbtb20-209,401184,Zbtb20-209;Zbtb20-211;Zbtb20-217;Zbtb20-218;Zbtb20-204;Zbtb20-215;Zbtb20-212;Zbtb20-201;Zbtb20-203,Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,98,56490,ENSMUSG00000022708,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25630,cg07056567,0.0000973,0.0000159,6.138011953,2.55E-09,gain,yes,-0.0000153,0.0000269,-0.56898141,0.569780747,neg,ns,0.021253574,0.007890821,2.693455152,0.007456468,pos,ns,2.127466834,-0.001200732,0.000271365,-4.424790453,0.0000134,neg,ns,0.431433202,Epo,Epo_Exon,5,137530696,137530745,137530696,137530697,50,+,CGGATCTGGTTCCGGAGCTGCTCGGCCTCCTGTCTCAGTTGCTCCAGCTC,"Exon (Gnb2-201/Gnb2, exon 2 of 10)",5,137483020,137533242,50223,2,Epo-202,2497,Epo-202;Gigyf1-201;Gnb2-201;Gnb2-213;Gnb2-209;Gnb2-203;Gnb2-204;Gnb2-202;Gnb2-212;Gnb2-214;Gnb2-215;Gnb2-208;Gnb2-205;Gnb2-210;Gnb2-211;Gnb2-206;Gnb2-207,Epo;Gigyf1;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,9,13856,ENSMUSG00000029711,mapped to different genes,5,137530649,137531066,418,*,418,30,0.693779904,0.609211038,0.071770335,9.46E-19,CpGisland,TRUE,NA,NRS
6515,cg04837182,-0.0000261,0.0000113,-2.29938741,0.02214745,loss,ns,-0.000011,0.0000193,-0.568868924,0.569856992,neg,ns,-0.004929919,0.005641422,-0.873878872,0.38286068,neg,ns,0.416959233,-0.0000711,0.000194008,-0.366408474,0.714310243,neg,ns,0.672701354,Zfp536,Zfp536_Intron,7,37570696,37570745,37570744,37570745,50,-,CATGATTATAATCATAAAAATCCTTCAGTGTTTGCAAGGAAGCATTAACG,"Intron (Zfp536-202/Zfp536, intron 4 of 6)",7,37479104,37769624,290521,2,Zfp536-202,198879,Zfp536-211;Zfp536-202;Zfp536-201;Zfp536-203;Zfp536-206;Zfp536-209;Zfp536-208,Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,73,112,243937,ENSMUSG00000043456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9010,cg08569883,-0.0000733,0.0000133,-5.508210636,7.62E-08,loss,yes,-0.0000129,0.0000226,-0.568825426,0.569886477,neg,ns,-0.006582886,0.006626706,-0.99338731,0.321295993,neg,ns,0.493094691,-0.00018678,0.000227892,-0.819600827,0.413073386,neg,ns,0.732564449,Trim8,Trim8_Exon,19,46515588,46515637,46515588,46515589,50,+,CGCCTCCCAGCAGCCCGGCCACCAGGATTTCTACAGGGTGTATGGGCAGC,"Exon (Trim8-201/Trim8, exon 6 of 6)",19,46501702,46516848,15147,1,Trim8-201,13886,Trim8-201;Trim8-202,Trim8;Trim8,0;928,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,15,21,93679,ENSMUSG00000025034,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26243,cg21181292,0.000043,0.0000191,2.250741608,0.025102452,gain,ns,-0.0000185,0.0000325,-0.568802062,0.569902315,neg,ns,0.031005015,0.009515414,3.258399003,0.001244811,pos,ns,2.904896678,-0.000890404,0.000327234,-2.720997836,0.006876186,neg,ns,0.238365225,Vps13d,Vps13d_Intron,4,145034854,145034903,145034854,145034855,50,+,CGGGAGGGCAGGCACGCTTTATTAAACAACTAATACTCTTCACAGATAAC,"Intron (Vps13d-202/Vps13d, intron 65 of 69)",4,144972622,145195005,222384,2,Vps13d-202,160102,Vps13d-202;Vps13d-203;Vps13d-201;Vps13d-210;Vps13d-205;Vps13d-207,Vps13d;Vps13d;Vps13d;Vps13d;Vps13d;Vps13d,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,10,230895,ENSMUSG00000020220,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U5,En-Sd
21427,cg16040691,-0.000000799,0.00000337,-0.236884597,0.812902778,loss,ns,-0.00000326,0.00000573,-0.568787306,0.569912317,neg,ns,-0.002004327,0.001678451,-1.194153264,0.233330956,neg,ns,0.632027639,0.0000349,0.0000577,0.60396626,0.546307789,pos,ns,0.931538995,Cacng4,Cacng4_Exon,11,107735199,107735248,107735247,107735248,50,+,CTCCAAAGTAAAAAGACCAGCCGTAGTTGTAATGGTTCTTTTTGTCTTCG,"Exon (Cacng4-201/Cacng4, exon 4 of 4)",11,107732357,107794557,62201,2,Cacng4-201,59309,Cacng4-201;Cacng4-202,Cacng4;Cacng4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,8,54377,ENSMUSG00000020723,conserved gene and region,11,107735166,107735331,166,*,166,12,0.493975904,1.18783542,0.072289157,7.76E-08,CpGisland,TRUE,U15,NS
11239,cg10593034,0.0000754,0.00000847,8.907189335,4.53E-17,gain,yes,0.00000818,0.0000144,0.568702344,0.569969913,pos,ns,0.017828651,0.004213289,4.231528214,0.0000306,pos,ns,4.514207144,-0.0000195,0.000144895,-0.134507716,0.893088397,neg,ns,0.242076516,Nr4a2,Nr4a2_Intron,2,57111200,57111249,57111248,57111249,50,-,ACTTAATTTGACCATAGGGAATTCTGTTCCACTTGGTTAGCTCAGACACG,"Intron (Nr4a2-201/Nr4a2, intron 3 of 7)",2,57106830,57115038,8209,2,Nr4a2-201,3789,Nr4a2-201;Nr4a2-203;Nr4a2-206;Nr4a2-202;Nr4a2-205;Nr4a2-204,Nr4a2;Nr4a2;Nr4a2;Nr4a2;Nr4a2;Nr4a2,0;0;0;0;0;3124,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,25,18227,ENSMUSG00000026826,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
16393,cg20556167,0.00000245,0.00000277,0.884069902,0.377343609,gain,ns,-0.00000268,0.00000471,-0.568637762,0.570013694,neg,ns,-0.001539109,0.001378615,-1.116417171,0.265108193,neg,ns,0.576576851,0.0000538,0.0000474,1.133991297,0.257674354,pos,ns,0.929342294,Trip12,Trip12_fiveUTR,1,84814877,84814926,84814877,84814878,50,-,CGTCGCAGTGACCCCCCTGGATTGTTATTAGGCCGGTTGGACATTGGCAC,5' UTR,1,84721189,84839304,118116,2,Trip12-201,24378,Trip12-201;Trip12-206;Trip12-207;Trip12-205;Trip12-208;Trip12-211;Trip12-214;Trip12-210,Trip12;Trip12;Trip12;Trip12;Trip12;Trip12;Trip12;Trip12,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,11,14897,ENSMUSG00000026219,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5539,cg15431715,-0.0000528,0.0000108,-4.891623773,0.00000161,loss,yes,-0.0000104,0.0000183,-0.56823906,0.570284017,neg,ns,-0.013164199,0.005375423,-2.448960741,0.014880393,neg,ns,1.827385585,0.000184897,0.00018486,1.000200303,0.31799366,pos,ns,0.874704422,Hdac9,Hdac9_Exon,12,34220915,34220964,34220963,34220964,50,-,AAGTATTTGGCGGTAATTGCAACTGAATTAAAAAAGCAGAACCCCCTGCG,"Exon (Hdac9-205/Hdac9, exon 18 of 25)",12,34047580,34528328,480749,2,Hdac9-205,307364,Hdac9-205;Hdac9-204;Hdac9-206;Hdac9-210;Hdac9-207,Hdac9;Hdac9;Hdac9;Hdac9;Hdac9,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,31,79221,ENSMUSG00000004698,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15608,cg14431257,-0.0000256,0.00000696,-3.672284358,0.000283046,loss,ns,-0.00000672,0.0000118,-0.568228486,0.570291187,neg,ns,0.000242916,0.003464547,0.070114789,0.944147504,pos,ns,0.024960151,-0.0000553,0.000119145,-0.463969318,0.642995358,neg,ns,0.952552995,Nfib,Nfib_threeUTR,4,82290628,82290677,82290676,82290677,50,-,AAAATGGATCAACCCTGGTGTGTAGCTAGCAAGCAATAACTGACTACTCG,3' UTR,4,82290173,82505308,215136,2,Nfib-201,214631,Nfib-201;Nfib-203;Nfib-202,Nfib;Nfib;Nfib,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,11,66,18028,ENSMUSG00000008575,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4975,cg12539975,0.0000254,0.00000265,9.601312866,2.79E-19,gain,yes,-0.00000255,0.0000045,-0.568078272,0.57039305,neg,ns,0.005173535,0.001317407,3.927058355,0.000106023,pos,ns,3.974597928,-0.000124124,0.0000453,-2.7397055,0.006505631,neg,ns,0.044786422,Prdm12,Prdm12_Promoter,2,31639645,31639694,31639645,31639646,50,-,CGTCAGGGGGTCATTAATAACCAATTAGGAGGGTCACTGCGGCTCCTATA,Promoter (<=1kb),2,31640037,31655795,15759,1,Prdm12-201,-392,Prdm12-201,Prdm12,0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,2,10,381359,ENSMUSG00000079466,conserved gene and region,2,31639565,31639646,82,*,82,11,0.707317073,1.093333333,0.134146342,3.73E-10,CpGisland,TRUE,U13,Hc-P
21165,cg14760338,-0.00000677,0.0000026,-2.601579571,0.009724834,loss,ns,-0.00000251,0.00000442,-0.568066551,0.570400998,neg,ns,-0.002095566,0.001294402,-1.61894495,0.106475994,neg,ns,0.972748298,0.0000188,0.0000445,0.422061387,0.673272763,pos,ns,0.939714337,Gm17304,Gm17304_Intron,5,106577534,106577583,106577582,106577583,50,-,TAATCAAGAGCCCAATTTTGTCATTTGGAAATACTAATTATCTAATCACG,"Intron (Gm28039-201/Gm28039-201, intron 2 of 2)",5,106609098,106609201,104,1,Gm17304-201,-31564,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,35,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
448,cg00384342,-0.000096,0.0000111,-8.660528508,2.63E-16,loss,yes,0.0000107,0.0000188,0.568053309,0.570409979,pos,ns,-0.001979863,0.005518621,-0.358760557,0.720018431,neg,ns,0.142656387,-0.000436369,0.000189785,-2.29928394,0.022153398,neg,ns,0.627065722,Dync1i1,Dync1i1_Intron,6,6005367,6005416,6005367,6005368,50,-,CGTTTTATTTCTGGTGTACTTTCAAACTTGCCTCTGACTTCTGTGCTATT,"Intron (Dync1i1-203/Dync1i1, intron 14 of 16)",6,5725639,6028039,302401,1,Dync1i1-203,279728,Dync1i1-203;Dync1i1-202;Dync1i1-204;Dync1i1-201;Dync1i1-206,Dync1i1;Dync1i1;Dync1i1;Dync1i1;Dync1i1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,9,13426,ENSMUSG00000029757,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19948,cg00168721,-0.0000137,0.00000868,-1.576915502,0.115834858,loss,ns,-0.00000837,0.0000147,-0.56802572,0.570428689,neg,ns,-0.002443938,0.004319023,-0.565854416,0.571902106,neg,ns,0.242678304,-0.0000139,0.000148531,-0.093351,0.925685019,neg,ns,0.785991172,Prr5l,Prr5l_Exon,2,101741321,101741370,101741369,101741370,50,-,AGAGTCTCAGTGAAGAAGTGGTCCCAGACTTCAGCCAGAACCTCAATGCG,"Exon (Prr5l-210/Prr5l, exon 6 of 9)",2,101714285,101797707,83423,2,Prr5l-210,56337,Prr5l-210;Prr5l-209;Prr5l-201;Prr5l-206;Prr5l-203,Prr5l;Prr5l;Prr5l;Prr5l;Prr5l,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,72446,ENSMUSG00000032841,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2494,cg19928775,0.0000402,0.0000158,2.545834923,0.011385505,gain,ns,0.0000152,0.0000268,0.567982522,0.570457985,pos,ns,0.019892682,0.007863036,2.52989836,0.011904639,pos,ns,1.924283782,-0.000528452,0.000270409,-1.954268063,0.05156833,neg,ns,0.562905429,Spred2,Spred2_Exon,11,19998136,19998185,19998136,19998137,50,-,CGTGTCAAGGCTGTGGTTATGACCAGAGATGACTCCAGCGGGGGATGGTT,"Exon (Spred2-202/Spred2, exon 2 of 7)",11,19924375,20024026,99652,1,Spred2-202,73761,Spred2-202;Spred2-201;Spred2-203,Spred2;Spred2;Spred2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,13,114716,ENSMUSG00000045671,conserved gene and region,11,19998072,19998386,315,*,315,19,0.523809524,0.886666667,0.06031746,9.62E-11,CpGisland,TRUE,U8,En-Pd
5661,cg27371176,0.0000143,0.0000175,0.819030812,0.413398022,gain,ns,-0.0000168,0.0000297,-0.56780559,0.570577983,neg,ns,0.030948887,0.008689224,3.561754819,0.000426259,pos,ns,3.370326411,-0.0010831,0.000298822,-3.624570339,0.000338185,neg,ns,0.38644253,Mapkap1,Mapkap1_Intron,2,34527108,34527157,34527108,34527109,50,-,CGAAATGAAGCCATTAGCTGTCTCTCTTACTGGCATCTCAAAGAGCTCAA,"Intron (Mapkap1-204/Mapkap1, intron 5 of 10)",2,34406862,34623475,216614,1,Mapkap1-204,120246,Mapkap1-204;Mapkap1-202;Mapkap1-201;Mapkap1-209;Mapkap1-203;Mapkap1-207,Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,59,227743,ENSMUSG00000038696,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
2520,cg05406595,-0.0000109,0.00000203,-5.387924715,0.000000141,loss,yes,0.00000195,0.00000344,0.567801281,0.570580905,pos,ns,0.001410023,0.001008279,1.398445302,0.16297896,pos,ns,0.787868458,-0.0000515,0.0000347,-1.484658682,0.138650364,neg,ns,0.098912343,Rab1a,Rab1a_fiveUTR,11,20201611,20201660,20201611,20201612,50,-,CGGCGGCAGCTGCAGTGACATGTCCAGCATGAATCCCGAATAGTGAGTTC,Promoter (<=1kb),11,20201432,20226856,25425,1,Rab1a-201,179,Rab1a-201;Rab1a-203;Rab1a-204;Rab1a-202;Rab1a-206;Rab1a-205,Rab1a;Rab1a;Rab1a;Rab1a;Rab1a;Rab1a,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,3,19324,ENSMUSG00000020149,conserved gene and region,11,20201557,20201939,383,*,383,46,0.751958225,0.93712766,0.120104439,3.19E-39,CpGisland,TRUE,U1,Pr-A
22564,cg00684550,-0.0000104,0.00000472,-2.197665602,0.028712255,loss,ns,0.00000455,0.00000801,0.567697221,0.570651487,pos,ns,-0.004027397,0.002347506,-1.71560669,0.087233215,neg,ns,1.059318123,0.000087,0.0000807,1.077150012,0.282250758,pos,ns,0.779287227,Rab37,Rab37_Exon,11,115156950,115156999,115156950,115156951,50,-,CGTCGGCAAAACATGTTTCCTGATCCAATTCAAAGACGGGGCCTTCCTGT,"Exon (Rab37-201/Rab37, exon 2 of 9)",11,115091431,115162236,70806,1,Rab37-202,65519,Rab37-202;Rab37-201;Rab37-204,Rab37;Rab37;Rab37,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,58222,ENSMUSG00000020732,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26755,cg14406300,-0.00000272,0.00000133,-2.044423096,0.041756267,loss,ns,-0.00000128,0.00000226,-0.567648492,0.57068454,neg,ns,0.000548904,0.000662221,0.828883456,0.4078081,pos,ns,0.389544152,-0.00000713,0.0000228,-0.312976131,0.754509249,neg,ns,0.045845477,Scrt2,Scrt2_Promoter,2,152080862,152080911,152080862,152080863,50,-,CGGATGTGTCAAAACCACCACCCCCCGGCAGCAGGAAAATTAATTACTGG,Promoter (<=1kb),2,152081529,152095802,14274,1,Scrt2-201,-667,Scrt2-201,Scrt2,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,10,545474,ENSMUSG00000060257,conserved gene and region,2,152080778,152081001,224,*,224,15,0.611607143,0.749665328,0.066964286,3.20E-09,CpGisland,TRUE,U13,Hc-P
17636,cg09391140,-0.00000225,0.00000111,-2.01599281,0.044663102,loss,ns,0.00000107,0.00000189,0.567591126,0.570723453,pos,ns,0.000477995,0.000554751,0.861639273,0.389552044,pos,ns,0.409434512,-0.0000237,0.0000191,-1.244008565,0.214436225,neg,ns,0.97138438,Elavl2,Elavl2_fiveUTR,4,91311640,91311689,91311688,91311689,50,-,GCCATGTTAGTTTGGAGTTGCCGTCTGCAATATGGACACAAAAAGTACCG,5' UTR,4,91250763,91372034,121272,2,Elavl2-204,60345,Elavl2-204;Elavl2-201;Elavl2-207;Elavl2-208;Elavl2-202;Elavl2-209;Elavl2-206;Elavl2-203;Elavl2-205;Elavl2-215;Elavl2-216;Elavl2-212;Elavl2-214,Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,8,31,15569,ENSMUSG00000008489,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26881,cg04337549,0.0000905,0.0000136,6.637133355,1.43E-10,gain,yes,0.0000132,0.0000232,0.567503818,0.570782678,pos,ns,0.03758649,0.006789551,5.535931387,0.000000066,pos,ns,7.18027827,-0.001298126,0.000233492,-5.559615356,5.84E-08,neg,yes,0.313914148,Snta1,Snta1_Intergenic_upstream,2,154421615,154421664,154421615,154421616,50,-,CGGGAGTGTGGCCAGCCTGTCAGGGTCACAGGTCACCATTAATCTGCCAG,Distal Intergenic,2,154376313,154408099,31787,2,Snta1-202,-13565,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,2,20648,ENSMUSG00000027488,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12163,cg07062999,-0.000000792,0.00000125,-0.631645347,0.528084146,loss,ns,-0.00000121,0.00000213,-0.567434915,0.570829421,neg,ns,0.00059693,0.000624011,0.956602772,0.33951319,pos,ns,0.469143348,-0.0000121,0.0000215,-0.562915475,0.573899323,neg,ns,0.959106053,Map2k5,Map2k5_Intron,9,63174819,63174868,63174867,63174868,50,-,TGTACATTAACCTATCATTAATGGCACATTAGGGCTAGGGGCATTGCACG,"Intron (Map2k5-201/Map2k5, intron 21 of 21)",9,63163768,63377902,214135,2,Map2k5-201,203034,Map2k5-201,Map2k5,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,34,37,23938,ENSMUSG00000058444,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6807,cg02893356,-0.0000164,0.00000502,-3.271784205,0.00118924,loss,ns,-0.00000484,0.00000854,-0.567386226,0.570862452,neg,ns,0.000962452,0.002500632,0.384883602,0.700587577,pos,ns,0.154537568,-0.000233328,0.000086,-2.713220171,0.007035773,neg,ns,0.921260059,Nek6,Nek6_Intron,2,38572099,38572148,38572147,38572148,50,+,TGGTCGGGCTGACAGGTGCGGTACCCAGCGGTGGCAGAGTGGCTGCCTCG,"Intron (Nek6-201/Nek6, intron 7 of 9)",2,38511643,38594606,82964,1,Nek6-201,60456,Nek6-201;Nek6-203;Nek6-202,Nek6;Nek6;Nek6,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,5,59126,ENSMUSG00000026749,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16961,cg16919161,0.0000284,0.0000119,2.391982433,0.017353183,gain,ns,-0.0000114,0.0000202,-0.567367307,0.570875287,neg,ns,0.01064858,0.005907967,1.802410385,0.072452074,pos,ns,1.139949178,-0.000135104,0.000203174,-0.664963468,0.506568239,neg,ns,0.519804018,Zfp423,Zfp423_Intron,8,87690416,87690465,87690464,87690465,50,+,CCTCCTGCAACTTATAAATCAGAGAAATCATGTCTGACAGTCACTTTCCG,"Intron (Zfp423-203/Zfp423, intron 3 of 5)",8,87661810,87804439,142630,2,Zfp423-203,113974,Zfp423-203;Zfp423-202;Zfp423-201,Zfp423;Zfp423;Zfp423,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,42,53,94187,ENSMUSG00000045333,conserved gene and region,8,87690464,87690599,136,*,136,11,0.617647059,0.865740741,0.080882353,0.000000102,CpGisland,TRUE,NA,NRS
11089,cg12220493,0.0000534,0.0000052,10.25850434,1.88E-21,gain,yes,-0.00000501,0.00000884,-0.567160214,0.571015792,neg,ns,0.006117022,0.002590021,2.361765195,0.018806173,pos,ns,1.725699562,-0.000097,0.0000891,-1.088796309,0.277089427,neg,ns,0.109248443,Nkx2-1,Nkx2-1_fiveUTR,12,56536690,56536739,56536690,56536691,50,-,CGCTGGATATTAGTAGATGAGGATCATTCTGCTTCAATTGGGCGCCTCTC,Promoter (<=1kb),12,56531958,56536908,4951,2,Nkx2-1-201,169,Nkx2-1-202;Nkx2-1-201,Nkx2-1;Nkx2-1,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,6,29,21869,ENSMUSG00000001496,mapped to different genes,12,56536346,56536691,346,*,346,28,0.61849711,0.84618744,0.080924856,5.59E-19,CpGisland,TRUE,U13,Hc-P
23781,cg20236392,-0.00000691,0.00000652,-1.05963036,0.290137704,loss,ns,-0.00000628,0.0000111,-0.567019252,0.571111438,neg,ns,-0.004490733,0.003244947,-1.383915588,0.167379869,neg,ns,0.776296777,0.00018931,0.000111593,1.696427631,0.090808767,pos,ns,0.152869985,C1ql2,C1ql2_Intergenic_downstream,1,120357720,120357769,120357720,120357721,50,+,CGGCAGTACCGTATTTCTCAGTAAATCAGTGTTGATAATTTAATAATAAA,Distal Intergenic,1,120340582,120343174,2593,1,C1ql2-201,17138,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,226359,ENSMUSG00000036907,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6683,cg00106809,-0.0000306,0.00000966,-3.16305485,0.001715921,loss,ns,0.00000931,0.0000164,0.566971073,0.571144131,pos,ns,0.008061513,0.004808584,1.67648373,0.094651589,pos,ns,1.023872092,-0.000582444,0.000165367,-3.522132585,0.000492436,neg,ns,0.698878137,Ubr5,Ubr5_Intron,15,38011832,38011881,38011832,38011833,50,-,CGTATTTTCTGACAATATGGAAGAATTCAAGGATGATGTAATTTCCTCTT,"Intron (Ubr5-201/Ubr5, intron 22 of 58)",15,37967859,38078854,110996,2,Ubr5-201,66973,Ubr5-201;Ubr5-204;Ubr5-213;Ubr5-208;Ubr5-206,Ubr5;Ubr5;Ubr5;Ubr5;Ubr5,0;0;-16;-2328;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,6,70790,ENSMUSG00000037487,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16859,cg17574259,-0.00000447,0.0000029,-1.539269881,0.124758502,loss,ns,-0.0000028,0.00000493,-0.56694522,0.571161674,neg,ns,0.001495302,0.001445676,1.034327192,0.301789428,pos,ns,0.520295978,-0.00009,0.0000497,-1.810383458,0.071204458,neg,ns,0.941467064,Ythdc1,Ythdc1_Exon,5,86820671,86820720,86820671,86820672,50,-,CGTGCTGTCCGAAAAGGTATCATTTAAATTTGAAATTGTTTTCATTGCAT,"Exon (Ythdc1-203/Ythdc1, exon 6 of 17)",5,86804221,86836654,32434,1,Ythdc1-202,16450,Ythdc1-202;Ythdc1-203;Ythdc1-208;Ythdc1-201;Ythdc1-207;Ythdc1-206,Ythdc1;Ythdc1;Ythdc1;Ythdc1;Ythdc1;Ythdc1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,17,231386,ENSMUSG00000035851,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
530,cg14323200,0.0000119,0.0000108,1.095435949,0.274176013,gain,ns,-0.0000104,0.0000184,-0.566918032,0.571180124,neg,ns,0.012057135,0.005387526,2.237972555,0.025932782,pos,ns,1.586150895,-0.000738314,0.000185277,-3.984928789,0.0000842,neg,ns,0.839645968,Tox,Tox_Intron,4,6842266,6842315,6842266,6842267,50,+,CGGCAGTTACTGATAGTGCTACTCATTTGCAATGCAACTCTTTGAATTTG,"Intron (Tox-201/Tox, intron 2 of 8)",4,6686353,6990799,304447,2,Tox-201,148484,Tox-201;Tox-203;Tox-204,Tox;Tox;Tox,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,15,252838,ENSMUSG00000041272,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25885,cg01412053,0.0000749,0.0000138,5.4108954,0.000000126,gain,yes,-0.0000133,0.0000235,-0.56690675,0.571187779,neg,ns,0.008519244,0.006889288,1.236592873,0.217174302,pos,ns,0.663191565,-0.000229342,0.000236922,-0.968005591,0.333796177,neg,ns,0.066371793,Macrod2,Macrod2_fiveUTR,2,140395433,140395482,140395481,140395482,50,+,TTAGCGCGAGGCGTGACCTAGTTGACAGGCTCTGAGGTGCTGCTGTGGCG,Promoter (<=1kb),2,140395433,140825872,430440,1,Macrod2-209,0,Macrod2-207;Macrod2-205;Macrod2-206;Macrod2-204;Macrod2-209;Macrod2-201;Macrod2-202;Macrod2-212;Macrod2-213;Macrod2-208;Macrod2-203,Macrod2;Macrod2;Macrod2;Macrod2;Macrod2;Macrod2;Macrod2;Macrod2;Macrod2;Macrod2;Macrod2,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,5,72899,ENSMUSG00000068205,conserved gene and region,2,140395122,140395580,459,*,459,50,0.740740741,0.795108093,0.108932462,3.13E-40,CpGisland,TRUE,U2,Pr-W
8771,cg26120306,0.0000247,0.000014,1.760217977,0.079357001,gain,ns,-0.0000135,0.0000239,-0.566849915,0.571226348,neg,ns,0.023381285,0.006988844,3.345515489,0.000922252,pos,ns,3.035150384,-0.000957261,0.000240346,-3.982849496,0.0000849,neg,ns,0.432664994,Fgf8,Fgf8_Intergenic_downstream,19,45734723,45734772,45734723,45734724,50,-,CGGCAATAACCCCTTGAAATCAGTTGTTATCACAGTTAACAACCAGTTTG,Distal Intergenic,19,45736990,45742684,5695,2,Fgf8-204,7961,Fgf8-201;Fgf8-206;Fgf8-202;Fgf8-205;Fgf8-203;Fgf8-204,Fgf8;Fgf8;Fgf8;Fgf8;Fgf8;Fgf8,0;0;0;0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,18,14179,ENSMUSG00000025219,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
6398,cg04521925,-0.00000559,0.00000324,-1.725185846,0.0854906,loss,ns,0.00000312,0.00000551,0.566827096,0.571241834,pos,ns,-0.000473314,0.001613855,-0.293281483,0.76950324,neg,ns,0.113789547,0.0000166,0.0000555,0.298694922,0.765372956,pos,ns,0.05907846,Marcks,Marcks_fiveUTR,10,37138511,37138560,37138511,37138512,50,+,CGGTCTTGGAGAACTGGGCACCCATGCTGGCTTCTTCAACAAAGAAACTC,Promoter (<=1kb),10,37133375,37138920,5546,2,Marcks-201,360,Marcks-201,Marcks,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,8,17118,ENSMUSG00000069662,conserved gene but different region,10,37138455,37138512,58,*,58,8,0.75862069,0.991452992,0.137931035,0.000000166,CpGisland,TRUE,U1,Pr-A
22607,cg07072330,-0.00000539,0.00000317,-1.697350713,0.090634004,loss,ns,-0.00000306,0.00000539,-0.566794045,0.571264263,neg,ns,-0.001213131,0.001579766,-0.767918396,0.443120203,neg,ns,0.353478448,0.0000127,0.0000543,0.23360998,0.815441968,pos,ns,0.899315632,Kctd2,Kctd2_Exon,11,115424528,115424577,115424528,115424529,50,-,CGGCTGGTTAAGGAAAGGATACGGGACAATGAGAACAGAACTTCACAAGT,"Exon (Kctd2-201/Kctd2, exon 3 of 6)",11,115420128,115431274,11147,1,Kctd2-201,4400,Atp5h-203;Atp5h-201;Atp5h-202;Kctd2-201;Kctd2-202;Kctd2-203;Kctd2-205;Kctd2-204,Atp5h;Atp5h;Atp5h;Kctd2;Kctd2;Kctd2;Kctd2;Kctd2,-4611;-4566;-4566;0;0;0;4216;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,70382,ENSMUSG00000016940,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18868,cg06504202,0.00000298,0.00000155,1.923536788,0.055328252,gain,ns,-0.00000149,0.00000263,-0.566733287,0.571305497,neg,ns,0.000503912,0.000771938,0.652788666,0.514376329,pos,ns,0.288719025,-0.00000217,0.0000265,-0.081676873,0.934956378,neg,ns,0.027242504,Nfia,Nfia_Intron,4,97778160,97778209,97778208,97778209,50,-,CACATGGCTAATGGCGCCCTCTTATTAATGCGTTAATTAATATCGGGGCG,"Intron (Nfia-208/Nfia, intron 1 of 3)",4,97772734,98000466,227733,1,Nfia-208,5426,E130114P18Rik-204;E130114P18Rik-205;Nfia-208;Nfia-202;Nfia-203;Nfia-205;Nfia-201;Nfia-204,E130114P18Rik;E130114P18Rik;Nfia;Nfia;Nfia;Nfia;Nfia;Nfia,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,44,18027,ENSMUSG00000028565,conserved gene and region,4,97778125,97778952,828,*,828,100,0.736714976,0.893550894,0.120772947,6.58E-85,CpGisland,TRUE,U1,Pr-A
20596,cg07064892,-0.0000512,0.0000117,-4.385328382,0.0000159,loss,ns,-0.0000112,0.0000198,-0.566535256,0.571439902,neg,ns,-0.01162943,0.005813932,-2.000269229,0.046343178,neg,ns,1.334014187,0.000381634,0.000199941,1.908734668,0.057219634,pos,ns,0.813550953,Hipk1,Hipk1_Exon,3,103777916,103777965,103777964,103777965,50,+,CACTTTTTCGTTTCAATCCACATTTTTGATATGGCTCAAGCAAAGAAACG,"Exon (Gm15886-201/Gm15886-201, exon 5 of 7)",3,103739815,103791563,51749,2,Hipk1-203,13598,Hipk1-203;Hipk1-202;Hipk1-201;Hipk1-206;Hipk1-205,Hipk1;Hipk1;Hipk1;Hipk1;Hipk1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,11,15257,ENSMUSG00000008730,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21130,cg16176805,0.000000425,0.00000316,0.134702104,0.892934824,gain,ns,0.00000304,0.00000536,0.566520192,0.571450126,pos,ns,-0.002982845,0.001570357,-1.899469076,0.058430847,neg,ns,1.233357821,0.000106725,0.000054,1.976228938,0.049015098,pos,ns,0.812595948,Rrp9,Rrp9_Exon,9,106483149,106483198,106483197,106483198,50,+,ATTTGGGAGGCCCAGAGCTGCCAGCACTTGTACACCTTCACAGGACACCG,"Exon (Rrp9-201/Rrp9, exon 8 of 15)",9,106477269,106485424,8156,1,Rrp9-201,5880,Rrp9-202;Rrp9-201;Rrp9-203;Rrp9-208;Rrp9-206;Rrp9-207;Rrp9-205,Rrp9;Rrp9;Rrp9;Rrp9;Rrp9;Rrp9;Rrp9,7186;0;0;0;2349;0;-1266,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,27966,ENSMUSG00000041506,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24127,cg20761338.1,0.000063,0.0000158,3.992506502,0.0000817,gain,ns,-0.0000152,0.0000268,-0.56639989,0.571531784,neg,ns,0.019569944,0.007853748,2.4917969,0.013232204,pos,ns,1.878367825,-0.00056895,0.00027009,-2.106523178,0.035962372,neg,ns,0.297501065,Anapc5,Anapc5_Exon,5,122802849,122802898,122802849,122802850,50,-,CGTTGGACTCCTGGGCAATCCTAATTGCCTCCTGCAGGGCGAGCTCTGCC,"Exon (Anapc5-201/Anapc5, exon 8 of 17)",5,122787459,122821339,33881,2,Anapc5-201,18441,Anapc5-201;Anapc5-202;Anapc5-203;Anapc5-208;Anapc5-205;Anapc5-212;Anapc5-218;Anapc5-209;Anapc5-204;Anapc5-215;Anapc5-217;Anapc5-216;Anapc5-207;Anapc5-214;Anapc5-213,Anapc5;Anapc5;Anapc5;Anapc5;Anapc5;Anapc5;Anapc5;Anapc5;Anapc5;Anapc5;Anapc5;Anapc5;Anapc5;Anapc5;Anapc5,0;0;0;0;0;0;0;-3119;0;0;0;0;0;18120;18372,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,6,59008,ENSMUSG00000029472,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20698,cg16589174,-0.0000588,0.0000107,-5.477040192,8.95E-08,loss,yes,-0.0000103,0.0000182,-0.566390429,0.571538206,neg,ns,-0.011781155,0.005346433,-2.203554386,0.028290747,neg,ns,1.548355579,0.0000574,0.000183863,0.312399468,0.754946988,pos,ns,0.836993019,Dab1,Dab1_fiveUTR,4,104479202,104479251,104479250,104479251,50,+,AAGTAGGATGTCAACTGAGACAGAACTTCAAGTAGCTGTGAAAACCAGCG,5' UTR,4,103619665,104680382,1060718,1,Dab1-202,859537,Dab1-202;Dab1-206;Dab1-207;Dab1-203,Dab1;Dab1;Dab1;Dab1,0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,13,13131,ENSMUSG00000028519,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7342,cg20914508,0.000035,0.00000404,8.666093722,2.53E-16,gain,yes,-0.00000389,0.00000686,-0.566354137,0.571562841,neg,ns,0.008551202,0.002011016,4.252180184,0.0000281,pos,ns,4.551976861,-0.000197307,0.0000692,-2.852965778,0.004622596,neg,ns,0.116857808,Gap43,Gap43_Promoter,16,42340679,42340728,42340727,42340728,50,+,ACACCAGGGCAGTTAGCAGCAACTGTAAGGTCCACAGCTATTGCTCATCG,Promoter (<=1kb),16,42248442,42340651,92210,2,Gap43-201,-28,Gap43-201,Gap43,-28,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,1,14432,ENSMUSG00000047261,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21596,cg01733991,0.0000339,0.00000932,3.633867514,0.000326706,gain,ns,0.00000897,0.0000158,0.566292251,0.571604851,pos,ns,0.000724512,0.004640261,0.156136047,0.876027412,pos,ns,0.057482304,0.000120139,0.000159578,0.752850824,0.452110882,pos,ns,0.569938624,Zfhx3,Zfhx3_Intron,8,108484929,108484978,108484929,108484930,50,-,CGCTTGTTAGACATCTGAAGGAATATCCAGTGGGCTCTGGGGGCAATTTG,"Intron (Zfhx3-204/Zfhx3, intron 3 of 15)",8,107942644,108961630,1018987,1,Zfhx3-204,542285,Zfhx3-204,Zfhx3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,114,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26594,cg25940230,-0.00000193,0.0000018,-1.07219128,0.284468096,loss,ns,0.00000173,0.00000305,0.566288146,0.571607638,pos,ns,0.00238411,0.000893584,2.668030273,0.008030918,pos,ns,2.095234806,-0.0000744,0.0000307,-2.422311,0.015995231,neg,ns,0.962224514,Casz1,Casz1_threeUTR,4,148954743,148954792,148954743,148954744,50,-,CGGCACCTGGTTATTAAGAACTGAATATTTTTCCACTTGAATTTAGTGCT,3' UTR,4,148804429,148954889,150461,1,Casz1-202,150314,Casz1-202;Casz1-207,Casz1;Casz1,0;7741,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4594,cg08668870,-0.0000218,0.00000817,-2.668218944,0.008026512,loss,ns,-0.00000786,0.0000139,-0.566120535,0.571721423,neg,ns,-0.007439297,0.004065396,-1.829907173,0.068223998,neg,ns,1.166062835,0.0000852,0.000139809,0.609552853,0.542604549,pos,ns,0.888240013,Hes1,Hes1_Intergenic_upstream,16,29893888,29893937,29893936,29893937,50,+,GCCCAGGAGCCCGATCTGTTTCTGAGATCAAACAGAGCAGCATTGTGCCG,Distal Intergenic,16,30064384,30065580,1197,1,Hes1-202,-170447,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,20,15205,ENSMUSG00000022528,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20673,cg18708262,-0.0000702,0.00000968,-7.256640285,3.21E-12,loss,yes,0.00000931,0.0000164,0.56594619,0.571839793,pos,ns,-0.012003269,0.004816843,-2.49193721,0.013227083,neg,ns,1.878535929,0.0000905,0.000165651,0.546355803,0.585214383,pos,ns,0.809316426,Kansl1,Kansl1_fiveUTR,11,104425196,104425245,104425196,104425197,50,-,CGCCATCGCAGCCATTCAGCACAGAGAGACAGGAAGTCCAGCCTCTCCCG,5' UTR,11,104333229,104442291,109063,2,Kansl1-205,17046,Kansl1-205;Kansl1-204;Kansl1-201;Kansl1-203;Kansl1-206,Kansl1;Kansl1;Kansl1;Kansl1;Kansl1,0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,11,76719,ENSMUSG00000018412,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
12791,cg23033318,0.00000167,0.00000238,0.700622388,0.484064218,gain,ns,0.00000229,0.00000404,0.565907147,0.571866302,pos,ns,0.000339458,0.001183967,0.286712304,0.774524146,pos,ns,0.110965039,-0.0000372,0.0000407,-0.913578799,0.361648192,neg,ns,0.940925071,Rsrc1,Rsrc1_Intron,3,67192181,67192230,67192181,67192182,50,-,CGACTAGTAAAATGCTGTTAGCGCTCTCTGAAGTATGAGAATGTGTAAAA,"Intron (Rsrc1-206/Rsrc1, intron 5 of 9)",3,66981390,67356559,375170,1,Rsrc1-206,210791,Rsrc1-206;Rsrc1-203;Rsrc1-202;Rsrc1-201;Rsrc1-209;Rsrc1-205,Rsrc1;Rsrc1;Rsrc1;Rsrc1;Rsrc1;Rsrc1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,37,66880,ENSMUSG00000034544,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12090,cg13322988,-0.00000398,0.00000163,-2.442513615,0.015143594,loss,ns,0.00000157,0.00000277,0.565795401,0.571942178,pos,ns,-0.001668488,0.00081168,-2.055598262,0.04065856,neg,ns,1.390848005,0.0000638,0.0000279,2.283933964,0.023051397,pos,ns,0.956560114,Fem1b,Fem1b_Exon,9,62796169,62796218,62796169,62796170,50,+,CGGGCAGCCAGGCACTTGAGACTCATCTTCATTTGAGTTTTAAGCAGTAT,"Exon (Fem1b-201/Fem1b, exon 2 of 2)",9,62791821,62811934,20114,2,Fem1b-201,15716,Fem1b-201,Fem1b,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,14155,ENSMUSG00000032244,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3949,cg25376216,0.00000805,0.00000479,1.680370846,0.09389251,gain,ns,0.00000461,0.00000814,0.56565137,0.572039983,pos,ns,0.002874351,0.002385811,1.20476928,0.229211326,pos,ns,0.639763926,-0.00020194,0.000082,-2.461242822,0.014390169,neg,ns,0.913976515,Gm9321,Gm9321_Exon,12,25871168,25871217,25871168,25871169,50,+,CGCCATGAATATTCATGAAGTAAGTTGTTTTTTGTTGCCTGCCTAGTCAG,"Exon (Gm47733-201/Gm47733-201, exon 1 of 2)",12,25819764,25820541,778,2,Gm9321-201,-50627,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,4,668726,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19252,cg11174883,0.00000583,0.00000509,1.144516471,0.253292423,gain,ns,0.0000049,0.00000865,0.565648404,0.572041997,pos,ns,0.005032138,0.00253528,1.984844854,0.048042926,pos,ns,1.318370546,-0.000225931,0.0000872,-2.591305365,0.010013547,neg,ns,0.924823075,Tnpo1,Tnpo1_Intron,13,98849890,98849939,98849938,98849939,50,+,CCATGCATCAATTAGTCGTTAGCCACAACATAAAATAAATATACATGACG,"Intron (Tnpo1-201/Tnpo1, intron 20 of 23)",13,98839019,98891040,52022,2,Tnpo1-201,41101,Tnpo1-201;Tnpo1-202;Tnpo1-206;Tnpo1-204,Tnpo1;Tnpo1;Tnpo1;Tnpo1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,9,238799,ENSMUSG00000009470,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2865,cg09539966,-0.0000355,0.0000081,-4.384831362,0.0000159,loss,ns,0.00000779,0.0000138,0.56561004,0.57206805,pos,ns,-0.007842723,0.00403335,-1.944468744,0.052743211,neg,ns,1.277833432,0.000149405,0.000138707,1.077132642,0.282258505,pos,ns,0.711564049,Sgk1,Sgk1_Exon,10,21996244,21996293,21996244,21996245,50,+,CGGAATGTTCTGTTGAAGAATGTGAAGCACCCTTTCCTGGTGGGCCTTCA,"Exon (Sgk1-204/Sgk1, exon 8 of 14)",10,21882184,21999893,117710,1,Sgk1-204,114060,Sgk1-204;Sgk1-210;Sgk1-213;Sgk1-212;Sgk1-203;Sgk1-202;Sgk1-201;Sgk1-209;Sgk1-207;Sgk1-206;Sgk1-208,Sgk1;Sgk1;Sgk1;Sgk1;Sgk1;Sgk1;Sgk1;Sgk1;Sgk1;Sgk1;Sgk1,0;0;0;4021;0;0;0;1561;0;0;-298,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,20393,ENSMUSG00000019970,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
9051,cg01675333,-0.0000393,0.000011,-3.586373227,0.000389446,loss,ns,-0.0000105,0.0000186,-0.565600843,0.572074296,neg,ns,-0.008373659,0.005451635,-1.53599055,0.12556068,neg,ns,0.901146341,-0.000121801,0.000187481,-0.649671671,0.516385421,neg,ns,0.738584853,Nova1,Nova1_Exon,12,46700753,46700802,46700801,46700802,50,+,CTTTGTGGATCCTCTTGTATCTTCTGGATGATAAGTTCAACAGCTTTTCG,"Exon (Nova1-201/Nova1, exon 5 of 5)",12,46694517,46818929,124413,2,Nova1-201,118127,Nova1-201;Nova1-204,Nova1;Nova1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,24,664883,ENSMUSG00000021047,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11756,cg10946980,0.00000775,0.00000301,2.572183305,0.010571385,gain,ns,-0.00000289,0.00000512,-0.56559805,0.572076192,neg,ns,0.001516958,0.001499355,1.011740046,0.312451381,pos,ns,0.505217552,-0.0000426,0.0000516,-0.826494127,0.409159518,neg,ns,0.925706353,Raph1,Raph1_Exon,1,60489020,60489069,60489068,60489069,50,+,AGACCCTGATTCTGCTGGCGGTGTAAACTTGCTGACTAGACTGTCCACCG,"Exon (Raph1-204/Raph1, exon 14 of 14)",1,60482292,60566779,84488,2,Raph1-204,77710,Raph1-204;Raph1-206;Raph1-201;Raph1-202;Raph1-207,Raph1;Raph1;Raph1;Raph1;Raph1,0;0;0;77700;7212,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,77300,ENSMUSG00000026014,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20458,cg16475116,0.0000893,0.00000799,11.18253461,1.29E-24,gain,yes,-0.00000767,0.0000136,-0.565504393,0.572139797,neg,ns,0.010299708,0.003975903,2.590532822,0.010035563,pos,ns,1.998458266,-0.00000779,0.000136731,-0.056964595,0.954610097,neg,ns,0.036532957,Hoxc4,Hoxc4_Intergenic_downstream,15,103061662,103061711,103061662,103061663,50,-,CGCGCCAGCCTCCGCAGCCGCCTTTGTACGCGTGATTTATGACTTCAATC,Distal Intergenic,15,103034395,103036852,2458,1,Hoxc4-201,27316,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,32,91,15423,ENSMUSG00000075394,mapped to different genes,15,103061537,103061809,273,*,273,19,0.586080586,0.8125,0.06959707,7.69E-12,CpGisland,TRUE,U13,Hc-P
22604,cg26706553,0.00000235,0.0000021,1.116810612,0.264940159,gain,ns,-0.00000202,0.00000357,-0.565318494,0.572266055,neg,ns,0.002929313,0.001047193,2.797299976,0.005475374,pos,ns,2.261586242,-0.0000927,0.000036,-2.57466663,0.010497404,neg,ns,0.050816198,Msi1,Msi1_Intron,5,115398602,115398651,115398650,115398651,50,-,GATCAGGCATGTGGAAAGATTCCGCCTCCCGGGCTCCCTTTGTGGCCGCG,"Intron (Gm13832-202/Gm13832-202, intron 1 of 2)",5,115429599,115455698,26100,1,Msi1-208,-30997,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,14,17690,ENSMUSG00000054256,conserved gene but different region,5,115398435,115398811,377,*,377,42,0.665782493,1.009950249,0.111405836,2.52E-34,CpGisland,TRUE,U3,Pr-B
21693,cg07968305,-0.00000783,0.00000919,-0.852352628,0.39467642,loss,ns,-0.00000883,0.0000156,-0.565309033,0.572272481,neg,ns,0.001356015,0.004573934,0.29646587,0.767072849,pos,ns,0.115163389,-0.000144636,0.000157297,-0.919509587,0.358544019,neg,ns,0.65000454,Zfhx3,Zfhx3_Intron,8,108889155,108889204,108889155,108889156,50,+,CGGGCTCTCCTCCGGGTGGTTTTGTTTTGCTGATCTGTCAGTTTTTCAAG,"Intron (Zfhx3-204/Zfhx3, intron 10 of 15)",8,107942644,108961630,1018987,1,Zfhx3-204,946511,Zfhx3-204;Zfhx3-201,Zfhx3;Zfhx3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,114,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21477,cg06630761,-0.0000252,0.00000728,-3.462586665,0.000610211,loss,ns,0.00000699,0.0000124,0.565272014,0.572297625,pos,ns,-0.00369856,0.003622599,-1.020968613,0.3080654,neg,ns,0.511357077,0.0000148,0.000124581,0.118616775,0.905655799,pos,ns,0.865285601,Bcl11b,Bcl11b_Intron,12,107928541,107928590,107928541,107928542,50,+,CGACGCAGATGGCAAATAAAGTACTCAGCCTAAGGCTACAGCACATTATG,"Intron (Bcl11b-201/Bcl11b, intron 3 of 3)",12,107910403,108003602,93200,2,Bcl11b-201,75012,Bcl11b-201;Bcl11b-202;Bcl11b-203,Bcl11b;Bcl11b;Bcl11b,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,39,58208,ENSMUSG00000048251,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14380,cg16005451,-0.00000961,0.00000371,-2.591870317,0.009997474,loss,ns,-0.00000356,0.0000063,-0.565111726,0.572406503,neg,ns,-0.002210233,0.001845535,-1.197610992,0.231983404,neg,ns,0.634543084,-0.0000121,0.0000635,-0.191057107,0.84860592,neg,ns,0.963052321,Speg,Speg_Exon,1,75403730,75403779,75403778,75403779,50,-,CTGCACTAACCTGCCGCTTGCTGACTGAGGTTTTTGTCTGTACACAGGCG,"Exon (Speg-205/Speg, exon 11 of 11)",1,75375297,75432320,57024,1,Speg-201,28433,Speg-201;Speg-205;Speg-211;Speg-204;Speg-203;Speg-202;Speg-206,Speg;Speg;Speg;Speg;Speg;Speg;Speg,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,9,11790,ENSMUSG00000026207,conserved gene and region,1,75403724,75403907,184,*,184,12,0.663043478,0.617277048,0.065217391,0.00000024,CpGisland,TRUE,U11,Tr-P
4371,cg02048494,-0.0000267,0.00000498,-5.368485834,0.000000156,loss,yes,0.00000478,0.00000845,0.565101347,0.572413553,pos,ns,-0.006010396,0.002476434,-2.427036836,0.01579231,neg,ns,1.801554337,0.000198473,0.0000852,2.330464742,0.02042295,pos,ns,0.856732537,Srpk1,Srpk1_Exon,17,28600332,28600381,28600380,28600381,50,-,TTTTGCCCAGGGCCCGACTCTTTCTCCATTTCCTCAATTTCCTGCATTCG,"Exon (Srpk1-212/Srpk1, exon 10 of 15)",17,28587648,28622487,34840,2,Srpk1-212,22106,Srpk1-212;Srpk1-204;Srpk1-201;Srpk1-203;Srpk1-211;Srpk1-213;Srpk1-207;Srpk1-210;Srpk1-208;Srpk1-206,Srpk1;Srpk1;Srpk1;Srpk1;Srpk1;Srpk1;Srpk1;Srpk1;Srpk1;Srpk1,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,4,20815,ENSMUSG00000004865,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13850,cg18428069,-0.00000516,0.00000312,-1.654182361,0.099102605,loss,ns,0.000003,0.0000053,0.565065273,0.572438058,pos,ns,-0.002816243,0.00155372,-1.812580667,0.070863769,neg,ns,1.149575755,0.000053,0.0000534,0.992636696,0.321661195,pos,ns,0.925093651,Ola1,Ola1_Intron,2,73100266,73100315,73100314,73100315,50,+,CCACATTCATTATTATCAAGTAGCACATACATATTCATAAGAATTGCACG,"Intron (Ola1-201/Ola1, intron 7 of 10)",2,73092801,73214447,121647,2,Ola1-201,114132,Ola1-201;Ola1-206;Ola1-203,Ola1;Ola1;Ola1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,19,67059,ENSMUSG00000027108,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26086,cg25194944,0.0000542,0.0000128,4.230295822,0.0000308,gain,ns,-0.0000123,0.0000218,-0.565046468,0.572450832,neg,ns,0.011732617,0.006380261,1.838892819,0.06688731,pos,ns,1.174656269,-0.000738423,0.000219417,-3.365389357,0.000860497,neg,ns,0.522771442,Gm2505,Gm2505_Intron,3,143813411,143813460,143813459,143813460,50,+,GTTTTGGCTACTGACTTAAATGTGTTAATTTTTTAACACTCACCAGGTCG,"Intron (Gm42705-201/Gm42705-201, intron 2 of 5)",3,143872995,143873819,825,1,Gm2505-201,-59535,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,37,100039938,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3385,cg20432233,0.0000269,0.00000977,2.758316288,0.006154999,gain,ns,-0.00000937,0.0000166,-0.564767864,0.572640107,neg,ns,0.007897727,0.004862385,1.624249737,0.105338819,pos,ns,0.977411553,-0.000391933,0.000167217,-2.343855446,0.019716931,neg,ns,0.323028166,Gm11892,Gm11892_Intergenic_upstream,4,23983698,23983747,23983698,23983699,50,+,CGAGCCCAAAAGCGTGAAAGCTCCTTATAGGCTGCAGGATGTGGATGTGA,Distal Intergenic,4,24238100,24239301,1202,1,Gm11892-201,-254353,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,16,16,664973,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11046,cg11806837,0.0000597,0.0000115,5.199466754,0.000000364,gain,yes,-0.000011,0.0000195,-0.564603811,0.572751574,neg,ns,0.010919747,0.005717191,1.909984626,0.057057855,pos,ns,1.24368456,-0.000241712,0.000196614,-1.229376312,0.21986303,neg,ns,0.449754635,Gm13518,Gm13518_Intergenic_downstream,2,56456137,56456186,56456137,56456138,50,-,CGTTTTCCTTTGAGTAGTGATTATGAGTCCTAGGTGAAGAGGTCCTGTGT,Distal Intergenic,2,56039853,56040085,233,1,Gm13518-201,416333,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,37,37,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14157,cg14397546,0.0000576,0.0000119,4.826215627,0.00000219,gain,ns,-0.0000114,0.0000203,-0.564534415,0.572798728,neg,ns,0.019143617,0.00593833,3.223737785,0.001400107,pos,ns,2.853838917,-0.000594822,0.000204219,-2.912674423,0.003843726,neg,ns,0.417792804,Gm27233,Gm27233_Intergenic_downstream,9,74711787,74711836,74711835,74711836,50,+,TGTTATTAGCCCTGAGCTGTGTCCGTTACTGGCCACACTCTTGCTGAGCG,Distal Intergenic,9,74709262,74709568,307,1,Gm27233-201,2525,Gm27233-201,Gm27233,2525,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,4,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14018,cg00752852,-0.00000689,0.00000597,-1.155083302,0.248945877,loss,ns,0.00000572,0.0000101,0.5645278,0.572803223,pos,ns,0.006218481,0.002969411,2.094179799,0.037055766,pos,ns,1.431144202,-0.000330986,0.000102118,-3.241219904,0.001319665,neg,ns,0.136724654,Arpc2,Arpc2_fiveUTR,1,74236802,74236851,74236850,74236851,50,+,CTTCCCCTGGGGGCAGCCGCCGCCATGATCCTGCTGGAGGTGAACAACCG,Promoter (<=1kb),1,74236084,74236888,805,1,Arpc2-204,718,Arpc2-204;Arpc2-203;Arpc2-201;Arpc2-202,Arpc2;Arpc2;Arpc2;Arpc2,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,6,6,76709,ENSMUSG00000006304,conserved gene but different region,1,74236248,74237193,946,*,946,100,0.695560254,0.886431784,0.105708245,2.03E-78,CpGisland,TRUE,U1,Pr-A
15906,cg06681737,-0.000000286,0.000000438,-0.652863329,0.514328255,loss,ns,0.00000042,0.000000744,0.564383386,0.572901359,pos,ns,-0.000483063,0.000217851,-2.21740341,0.027320522,neg,ns,1.563511014,0.00000983,0.00000749,1.311802303,0.190557467,pos,ns,0.988205909,Hnf1b,Hnf1b_Exon,11,83861868,83861917,83861868,83861869,50,+,CGCAACCGGTTCAAATGGGGGCCCGCGTCCCAGCAAATCTTGTACCAGGC,"Exon (Hnf1b-201/Hnf1b, exon 3 of 9)",11,83850855,83905819,54965,1,Hnf1b-201,11013,Hnf1b-201;Hnf1b-203;Hnf1b-205;Hnf1b-202,Hnf1b;Hnf1b;Hnf1b;Hnf1b,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,4,21410,ENSMUSG00000020679,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26230,cg06261373,0.00000243,0.00000603,0.402706211,0.687441927,gain,ns,-0.00000578,0.0000102,-0.564320453,0.572944127,neg,ns,-0.001359625,0.003002676,-0.452804605,0.651006183,neg,ns,0.186414887,0.0000278,0.000103262,0.268765082,0.788289242,pos,ns,0.878722221,Trrap,Trrap_Exon,5,144845456,144845505,144845504,144845505,50,-,CATTCTGCATCAGATCCAGGGCCCATAAGAGCAACAGCACCCATGTGGCG,"Exon (Trrap-203/Trrap, exon 64 of 71)",5,144768794,144859778,90985,1,Trrap-203,76662,Trrap-203;Trrap-201;Trrap-202;Trrap-215;Trrap-207,Trrap;Trrap;Trrap;Trrap;Trrap,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,100683,ENSMUSG00000045482,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20960,cg03119474,0.0000827,0.000012,6.891491694,3.09E-11,gain,yes,0.0000115,0.0000204,0.564220842,0.573011824,pos,ns,0.023979827,0.005971061,4.016007708,0.0000743,pos,ns,4.128889913,-0.000582275,0.000205344,-2.835603189,0.004874635,neg,ns,0.290833634,Papola,Papola_Intergenic_downstream,12,105875133,105875182,105875133,105875134,50,+,CGGACATTAAATCAACATGGCTCTATTAGTGGCCTTGGGATGCCAGCTGA,Distal Intergenic,12,105829067,105835499,6433,1,Papola-220,46066,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,8,18789,ENSMUSG00000021111,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16748,cg25030581,0.0000625,0.0000103,6.08710644,3.39E-09,gain,yes,0.00000983,0.0000174,0.564137158,0.5730687,pos,ns,0.014832821,0.005107155,2.904321744,0.003944946,pos,ns,2.403958904,-0.000422856,0.000175635,-2.407591106,0.016642121,neg,ns,0.406015687,Esrrb,Esrrb_Intron,12,86389017,86389066,86389065,86389066,50,-,ATCCGGGTGGGATTTCTTCATCTTATCAATCAGGACTTTAATTAGACACG,"Intron (Esrrb-204/Esrrb, intron 1 of 6)",12,86361117,86521628,160512,1,Esrrb-204,27900,Esrrb-204,Esrrb,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,19,26380,ENSMUSG00000021255,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17951,cg23143204,-0.0000849,0.0000109,-7.79073751,1.01E-13,loss,yes,0.0000104,0.0000185,0.56411888,0.573081123,pos,ns,-0.015373491,0.005426324,-2.833131586,0.004911511,neg,ns,2.30878484,0.0000145,0.000186611,0.077956968,0.937912576,pos,ns,0.812210055,Pdzrn4,Pdzrn4_Intron,15,92752407,92752456,92752455,92752456,50,-,ACCTGTCAGGAGCTGGTTAATTGTGTTGCTAGATGTATGTTGCCAGGGCG,"Intron (Pdzrn4-202/Pdzrn4, intron 7 of 9)",15,92396881,92771036,374156,1,Pdzrn4-202,355526,Pdzrn4-202;Pdzrn4-201,Pdzrn4;Pdzrn4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,7,239618,ENSMUSG00000036218,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26653,cg21180178,-0.00000179,0.000000568,-3.142658887,0.001836058,loss,ns,0.000000544,0.000000965,0.563958247,0.573190306,pos,ns,0.000178985,0.000282801,0.632900663,0.527265096,pos,ns,0.277970977,-0.0000171,0.00000973,-1.754592484,0.080316985,neg,ns,0.020121387,Ube4b,Ube4b_fiveUTR,4,149426574,149426623,149426622,149426623,50,-,AAGTATTATTCATCAAAACAACAGGGCGGCCATCTTTGAAAGGGATCACG,Promoter (<=1kb),4,149385126,149426600,41475,2,Ube4b-209,0,Ube4b-202;Ube4b-213;Ube4b-214;Ube4b-210;Ube4b-212;Ube4b-201;Ube4b-209;Ube4b-211,Ube4b;Ube4b;Ube4b;Ube4b;Ube4b;Ube4b;Ube4b;Ube4b,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,4,63958,ENSMUSG00000028960,conserved gene and region,4,149426063,149426863,801,*,801,73,0.695380774,0.758404669,0.09113608,2.27E-52,CpGisland,TRUE,NA,NRS
19509,cg02912754,-0.00000196,0.00000377,-0.518619891,0.604395827,loss,ns,0.00000362,0.00000641,0.563955454,0.573192204,pos,ns,0.00226419,0.001877961,1.20566395,0.228866534,pos,ns,0.640417708,-0.0000736,0.0000646,-1.139724273,0.255281043,neg,ns,0.924489219,Armc8,Armc8_Exon,9,99497298,99497347,99497346,99497347,50,-,AAATCTGAATCTGATAATAACCGGAATAGCTGTTCAGTACTCAAGCTTCG,"Exon (Armc8-201/Armc8, exon 17 of 22)",9,99478372,99568899,90528,2,Armc8-201,71552,Armc8-201,Armc8,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,10,74125,ENSMUSG00000032468,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8665,cg10765212,-0.0000276,0.0000224,-1.233764218,0.21822535,loss,ns,0.0000214,0.000038,0.563952821,0.573193994,pos,ns,-0.008431598,0.01113166,-0.757442982,0.449359863,neg,ns,0.347405722,0.000493494,0.000382817,1.28911368,0.198319646,pos,ns,0.203844747,Col5a2,Col5a2_fiveUTR,1,45503165,45503214,45503213,45503214,50,-,CTGCCAAGCAACGGTCTGATTGATGGTAAACAACCAAATCAGAACACGCG,Promoter (<=1kb),1,45374321,45503282,128962,2,Col5a2-201,68,Col5a2-201;Col5a2-203,Col5a2;Col5a2,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,4,12832,ENSMUSG00000026042,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6852,cg24980230,-0.0000839,0.000014,-5.985661593,5.95E-09,loss,yes,0.0000134,0.0000238,0.563923207,0.573214124,pos,ns,-0.020335791,0.006975248,-2.915422046,0.003810951,neg,ns,2.418966611,0.000229749,0.000239878,0.95777476,0.3389227,pos,ns,0.624623075,Etv1,Etv1_Intron,12,38788859,38788908,38788859,38788860,50,+,CGCCTTGTTTGGCTCCAGGTCATTGTTACAGTGGATAGAACTGGTTTTAA,"Intron (Etv1-203/Etv1, intron 4 of 11)",12,38779380,38866249,86870,1,Etv1-203,9479,Etv1-203;Etv1-201;Etv1-211;Etv1-206;Etv1-205;Etv1-212;Etv1-208;Etv1-210;Etv1-204;Etv1-202,Etv1;Etv1;Etv1;Etv1;Etv1;Etv1;Etv1;Etv1;Etv1;Etv1,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,10,14009,ENSMUSG00000004151,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22195,cg25531140,-0.0000156,0.00000871,-1.788427048,0.07468357,loss,ns,-0.00000835,0.0000148,-0.56388547,0.573239776,neg,ns,-0.00627022,0.004336722,-1.445843143,0.149231408,neg,ns,0.826139763,-0.0000345,0.00014914,-0.231246875,0.81727557,neg,ns,0.86782676,Gm26897,Gm26897_Intergenic_upstream,5,111700050,111700099,111700050,111700051,50,-,CGAGGCCTGTTTGTTATTAAGATGTAAATTAAATCATCACAGATGTTCCA,Distal Intergenic,5,111733924,111734574,651,1,Gm26897-201,-33874,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,23,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13920,cg09205019,-0.000000231,0.00000149,-0.154487799,0.877325661,loss,ns,0.00000143,0.00000254,0.563829359,0.573277919,pos,ns,0.001467906,0.000742982,1.975696419,0.049075725,pos,ns,1.309133278,-0.0000409,0.0000256,-1.599631669,0.110698947,neg,ns,0.039688063,Rgma,Rgma_Exon,7,73392155,73392204,73392155,73392156,50,+,CGGACCTCTTGTTTTTGTTGGGGGAAGGGAGACCAACTCCACAGAGAAGC,"Exon (Rgma-205/Rgma, exon 1 of 1)",7,73375509,73419899,44391,1,Rgma-202,16646,Rgma-202;Rgma-201;Rgma-203;Rgma-204;Rgma-205,Rgma;Rgma;Rgma;Rgma;Rgma,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,244058,ENSMUSG00000070509,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
18913,cg10600935,-0.0000205,0.0000132,-1.554800277,0.121013932,loss,ns,0.0000126,0.0000224,0.563812366,0.57328947,pos,ns,0.002384126,0.00656651,0.363073461,0.71679745,pos,ns,0.144603548,-0.000600508,0.000225822,-2.659214184,0.008239219,neg,ns,0.522349693,Dach1,Dach1_Intron,14,97884673,97884722,97884721,97884722,50,-,TGCCTGGTCCTCACAAGTTGGCAGAAAAATAGATTCTGTCACATTTAACG,"Intron (Dach1-201/Dach1, intron 6 of 10)",14,97786853,98169543,382691,2,Dach1-201,284821,Dach1-201;Dach1-202;Dach1-203,Dach1;Dach1;Dach1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,76,13134,ENSMUSG00000055639,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2723,cg06804400,-0.00000607,0.00000217,-2.792541777,0.005554512,loss,ns,-0.00000208,0.00000369,-0.563750513,0.573331518,neg,ns,-0.000665808,0.001081648,-0.615549416,0.538643587,neg,ns,0.268698507,0.0000241,0.0000372,0.648653601,0.517042513,pos,ns,0.933574466,Kat6b,Kat6b_Exon,14,21622012,21622061,21622060,21622061,50,-,AGAAAGCTGCACAAATAAAACGACGATATGCAAAACCCATTGGACGACCG,"Exon (Kat6b-206/Kat6b, exon 6 of 17)",14,21499770,21672071,172302,1,Kat6b-206,122242,Kat6b-211;Kat6b-206;Kat6b-204;Kat6b-201;Kat6b-202;Kat6b-208;Kat6b-210;Kat6b-203;Kat6b-214;Kat6b-205;Kat6b-213,Kat6b;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,Exon,11,21,54169,ENSMUSG00000021767,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7817,cg10078989,-0.00000329,0.00000129,-2.547237982,0.011340782,loss,ns,0.00000124,0.00000219,0.563643976,0.573403946,pos,ns,-0.000534773,0.000642042,-0.832925945,0.405527741,neg,ns,0.391979432,-0.0000104,0.0000221,-0.469651294,0.63893435,neg,ns,0.021838604,Eny2,Eny2_fiveUTR,15,44428158,44428207,44428206,44428207,50,+,GCCGAAGAGTGTGGTAGGTAACGGTCCTCAGCGCAAGGGTCATTTCGTCG,Promoter (<=1kb),15,44428042,44433008,4967,1,Eny2-210,116,Eny2-210;Eny2-203;Eny2-204;Eny2-205;Eny2-201;Eny2-202;Eny2-206;Eny2-208;Eny2-209;Nudcd1-206;Nudcd1-201;Nudcd1-202;Nudcd1-204;Nudcd1-205;Nudcd1-207;Nudcd1-203,Eny2;Eny2;Eny2;Eny2;Eny2;Eny2;Eny2;Eny2;Eny2;Nudcd1;Nudcd1;Nudcd1;Nudcd1;Nudcd1;Nudcd1;Nudcd1,0;0;0;0;0;0;0;0;-4953;-285;0;-373;-270;-299;-350;-304,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,5,223527,ENSMUSG00000022338,conserved gene and region,15,44428086,44428510,425,*,425,38,0.644705882,0.8608742,0.089411765,3.12E-27,CpGisland,TRUE,U1,Pr-A
13872,cg06562958,0.000000528,0.00000101,0.520767526,0.602900489,gain,ns,0.00000097,0.00000172,0.56364249,0.573404956,pos,ns,0.000692929,0.000504202,1.374308266,0.170338727,pos,ns,0.768686603,-0.0000322,0.0000173,-1.855111454,0.064529518,neg,ns,0.977257207,Ola1,Ola1_Intron,2,73143851,73143900,73143899,73143900,50,+,AATGTAGACCATTTTTATTCATTGCCTAAAATTGTAGGCAATTATGTGCG,"Intron (Ola1-201/Ola1, intron 5 of 10)",2,73092801,73214447,121647,2,Ola1-201,70547,Ola1-201;Ola1-206;Ola1-203;Ola1-202,Ola1;Ola1;Ola1;Ola1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,19,67059,ENSMUSG00000027108,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5923,cg11019930,0.00000457,0.00000313,1.457604323,0.145961899,gain,ns,-0.000003,0.00000532,-0.5635733,0.573451996,neg,ns,-0.001006982,0.001559326,-0.645779982,0.518899574,neg,ns,0.284916686,0.0000288,0.0000536,0.536924153,0.591705146,pos,ns,0.0583341,Osr2,Osr2_Exon,15,35300802,35300851,35300802,35300803,50,-,CGAAAAAAGAGTTTATCTGCAAGTTTTGCGGCAGACACTTTACCAAATCC,"Exon (Osr2-203/Osr2, exon 2 of 3)",15,35296098,35303304,7207,1,Osr2-203,4704,Osr2-202;Osr2-203;Osr2-201;Osr2-205;Osr2-204,Osr2;Osr2;Osr2;Osr2;Osr2,4704;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,6,107587,ENSMUSG00000022330,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
20721,cg19778148,-0.000011,0.00000838,-1.30939715,0.191369502,loss,ns,-0.00000802,0.0000142,-0.563572525,0.573452523,neg,ns,-0.003207274,0.004168898,-0.769333913,0.442280887,neg,ns,0.354301828,-0.000121649,0.000143368,-0.848505886,0.396811,neg,ns,0.838596108,Dicer1,Dicer1_Intergenic_downstream,12,104634970,104635019,104635018,104635019,50,-,CTGACAGATCCGGTGCTAAGATGTTCTGAATTAGATTTGAATTACAACCG,Distal Intergenic,12,104697346,104700502,3157,2,Dicer1-205,65532,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,12,192119,ENSMUSG00000041415,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14516,cg24352393,0.0000392,0.0000217,1.803345268,0.07230486,gain,ns,-0.0000208,0.0000369,-0.563377818,0.573584908,neg,ns,-0.001099261,0.010810366,-0.101685822,0.919071795,neg,ns,0.036650561,0.00045429,0.000371768,1.221972795,0.222646272,pos,ns,0.749371159,Zbtb7c,Zbtb7c_Exon,18,76137922,76137971,76137970,76137971,50,-,CAAGGCCTCTCAGCAGTGCCCCATCTGCCACAAAGTCATCATGGGGGCCG,"Exon (Zbtb7c-201/Zbtb7c, exon 4 of 5)",18,75820178,76148564,328387,1,Zbtb7c-201,317744,Zbtb7c-201;Zbtb7c-203;Zbtb7c-202,Zbtb7c;Zbtb7c;Zbtb7c,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,4,207259,ENSMUSG00000044646,conserved gene and region,18,76137970,76138122,153,*,153,11,0.699346405,0.64187643,0.071895425,0.000000341,CpGisland,TRUE,U11,Tr-P
9534,cg08074329,0.0000418,0.00000269,15.53380709,1.20E-40,gain,yes,0.00000258,0.00000457,0.563255489,0.573668089,pos,ns,0.00475623,0.001340137,3.549061975,0.000446491,pos,ns,3.350186854,0.0000595,0.0000461,1.290498796,0.197839213,pos,ns,0.04898644,Igf2bp3,Igf2bp3_fiveUTR,6,49214919,49214968,49214967,49214968,50,-,CGAGTGTCCGGCTTTTTGAATGAGCCACGTGTTCAAACTACAAATCAACG,Promoter (<=1kb),6,49085223,49214957,129735,2,Igf2bp3-201,0,Igf2bp3-201;Igf2bp3-202;Igf2bp3-203,Igf2bp3;Igf2bp3;Igf2bp3,0;-758;-215,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,5,140488,ENSMUSG00000029814,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
15020,cg22961850,-0.0000428,0.0000122,-3.522489187,0.0004918,loss,ns,-0.0000116,0.0000206,-0.563222496,0.573690525,neg,ns,0.001253826,0.006048,0.207312596,0.835901853,pos,ns,0.077844712,-0.000384038,0.00020799,-1.846421362,0.065784127,neg,ns,0.766742323,Slc14a2,Slc14a2_Intron,18,78521048,78521097,78521096,78521097,50,+,TAGAGCCCTAACTGTTTCATGGAATAATCATTCCTGCCAGATTAAGGTCG,"Intron (Slc14a2-206/Slc14a2, intron 2 of 21)",18,78146148,78596942,450795,2,Slc14a2-206,75845,Slc14a2-206;Slc14a2-203,Slc14a2;Slc14a2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,12,27411,ENSMUSG00000024552,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18260,cg01275810,-0.0000433,0.0000136,-3.179475021,0.001624526,loss,ns,0.000013,0.0000231,0.563152177,0.573738344,pos,ns,-0.00317196,0.006771095,-0.468455894,0.639787826,neg,ns,0.193964028,0.000218973,0.000232857,0.940371784,0.347759055,pos,ns,0.807756855,Ap3b1,Ap3b1_Intergenic_downstream,13,94596967,94597016,94597015,94597016,50,-,GATAAATTTATGTGAATCAGGTCTTTCTCTCCAGGATCTTGTGACTTTCG,Distal Intergenic,13,94542303,94547867,5565,1,Ap3b1-202,54713,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,33,55,11774,ENSMUSG00000021686,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
4433,cg18065210,-0.00000442,0.0000024,-1.838011116,0.067017505,loss,ns,0.0000023,0.00000408,0.563136738,0.573748843,pos,ns,-0.000420385,0.001196496,-0.351346928,0.725566767,neg,ns,0.139322617,-0.0000298,0.0000411,-0.723819879,0.469722169,neg,ns,0.930963397,Actn4,Actn4_Exon,7,28909923,28909972,28909923,28909924,50,-,CGTGGTAGAAGCAGGACACGTAAGTCATGATGGCCTTCTCATCTGGCCTC,"Exon (Actn4-202/Actn4, exon 8 of 13)",7,28893248,28962340,69093,2,Actn4-201,52368,Actn4-201;Actn4-206;Actn4-211;Actn4-202;Actn4-208;Actn4-204;Actn4-207,Actn4;Actn4;Actn4;Actn4;Actn4;Actn4;Actn4,0;0;0;0;-2237;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,9,60595,ENSMUSG00000054808,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15567,cg23388027,-0.00000139,0.00000293,-0.473612944,0.636109303,loss,ns,-0.0000028,0.00000498,-0.562874401,0.573927258,neg,ns,-0.002845273,0.001458487,-1.950839165,0.051976907,neg,ns,1.284189568,-0.0000386,0.0000502,-0.770418865,0.441638194,neg,ns,0.897878826,Tef,Tef_Exon,15,81823616,81823665,81823616,81823617,50,+,CGCAAGGAGGTGGGCAAGTGCAAGACCATCGTGTCCAAGTATGAGACCAA,"Exon (Tef-202/Tef, exon 4 of 4)",15,81802421,81826863,24443,1,Tef-202,21195,Tef-202;Tef-206;Tef-201;Tef-205;Tef-207,Tef;Tef;Tef;Tef;Tef,0;0;0;3023;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,21685,ENSMUSG00000022389,conserved gene and region,15,81823487,81823698,212,*,212,14,0.603773585,0.72620504,0.066037736,1.46E-08,CpGisland,TRUE,NA,NRS
9361,cg13911558,-0.00000163,0.00000185,-0.882922592,0.377962252,loss,ns,0.00000177,0.00000314,0.562652303,0.574078328,pos,ns,0.000485222,0.000921049,0.52681394,0.598699557,pos,ns,0.222791063,-0.0000235,0.0000317,-0.742392068,0.458411966,neg,ns,0.961710441,Elf4,Elf4_Exon,X,48415308,48415357,48415356,48415357,50,+,GAGCTGAGTGGGAGCAGTAGTACTGGCAGGAGGCCCATTGGTCAGCACCG,"Exon (Elf4-202/Elf4, exon 9 of 9)",20,48411046,48454169,43124,2,Elf4-202,38812,Elf4-202;Elf4-201;Elf4-203,Elf4;Elf4;Elf4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,56501,ENSMUSG00000031103,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14501,cg11159633,-0.00000382,0.00000318,-1.199817218,0.231126495,loss,ns,0.00000304,0.00000541,0.562600586,0.574113508,pos,ns,0.001918188,0.001584508,1.21058962,0.226974898,pos,ns,0.64402217,-0.0000638,0.0000545,-1.171361686,0.242352962,neg,ns,0.905405745,Puf60,Puf60_Exon,15,76074363,76074412,76074363,76074364,50,-,CGCAGTTACCTGGCCGATTAGTTTTAAGGTGGGCCCTCAGAGCAGATGGA,"Exon (Puf60-211/Puf60, exon 5 of 5)",15,76070182,76080913,10732,2,Puf60-202,6501,Puf60-202;Puf60-204;Puf60-201;Puf60-203;Puf60-207;Puf60-210;Puf60-211;Puf60-208;Puf60-206;Puf60-209;Scrib-201;Scrib-202;Scrib-203,Puf60;Puf60;Puf60;Puf60;Puf60;Puf60;Puf60;Puf60;Puf60;Puf60;Scrib;Scrib;Scrib,0;0;0;-2966;0;0;0;0;3290;2541;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,6,67959,ENSMUSG00000002524,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7368,cg19971650,0.00010131,0.0000147,6.904623449,2.85E-11,gain,yes,-0.000014,0.0000249,-0.562572357,0.574132711,neg,ns,0.026317834,0.007302764,3.603818329,0.00036519,pos,ns,3.437481291,-0.000691546,0.000251141,-2.753612447,0.006241968,neg,ns,0.208356713,Gabrb2,Gabrb2_fiveUTR,11,42421249,42421298,42421249,42421250,50,+,CGCCGTGCGCATGCGCCTCACATTAGAATTACTGCACTGGGCAGACTAAG,Promoter (<=1kb),11,42421279,42487545,66267,1,Gabrb2-202,0,Gabrb2-201;Gabrb2-203;Gabrb2-202;Gabrb2-204;Gabrb2-205,Gabrb2;Gabrb2;Gabrb2;Gabrb2;Gabrb2,0;0;0;-12;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,5,14401,ENSMUSG00000007653,conserved gene and region,11,42421208,42421263,56,*,56,8,0.696428571,1.185185185,0.142857143,0.000000123,CpGisland,TRUE,U9,En-Pp
14067,cg27432588,-0.0000242,0.000006,-4.031002859,0.00007,loss,ns,0.00000573,0.0000102,0.562473324,0.574200082,pos,ns,-0.002324887,0.002985627,-0.778692878,0.436754629,neg,ns,0.359762484,0.0000824,0.000102675,0.802916906,0.422637918,pos,ns,0.929560507,Ccdc92b,Ccdc92b_Exon,11,74630024,74630073,74630024,74630025,50,-,CGCCACATCAGCTTCCTGAAAAAGGAGCAGATGGCCCTGCTGCGAGACCT,"Exon (Ccdc92b-201/Ccdc92b, exon 2 of 4)",11,74619605,74641516,21912,1,Ccdc92b-201,10419,Ccdc92b-201,Ccdc92b,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,432582,ENSMUSG00000069814,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23697,cg17339503,7.57E-08,0.00000685,0.011058355,0.991184002,gain,ns,0.00000654,0.0000116,0.562470868,0.574201753,pos,ns,0.016041183,0.00340874,4.705897786,0.00000381,pos,ns,5.418581244,-0.000444338,0.000117226,-3.790425418,0.000180705,neg,ns,0.096475214,Gm18384,Gm18384_Intergenic_upstream,3,119933188,119933237,119933188,119933189,50,+,CGAGTTGGCATGGAAACAACTCTTTGCTGGCAACATGACATATGATTCAA,Distal Intergenic,3,119968731,119969538,808,1,Gm18384-201,-35494,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,5,100417046,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15841,cg04142398,-0.0000157,0.00000713,-2.208340648,0.027952113,loss,ns,0.00000681,0.0000121,0.562222941,0.57437043,pos,ns,0.0001,0.003549312,0.028163075,0.977550209,pos,ns,0.009860927,-0.000192423,0.000122061,-1.576454817,0.115940929,neg,ns,0.617441986,Mef2c,Mef2c_threeUTR,13,83652834,83652883,83652834,83652835,50,+,CGAAACTCACCAGGTCTGCTGGTCTCACCTGGTAACTTGAACAAGAATAT,3' UTR,13,83504034,83663343,159310,1,Mef2c-218,148800,Mef2c-218;Mef2c-228;Mef2c-201;Mef2c-202;Mef2c-222;Mef2c-223;Mef2c-227;Mef2c-213;Mef2c-214;Mef2c-215;Mef2c-212;Mef2c-203;Mef2c-224;Mef2c-219;Mef2c-225;Mef2c-230;Mef2c-220;Mef2c-211,Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,10,41,17260,ENSMUSG00000005583,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4680,cg06557337,-0.0000951,0.0000129,-7.365096377,1.61E-12,loss,yes,0.0000123,0.0000219,0.562182686,0.574397821,pos,ns,-0.018015185,0.006429325,-2.802033875,0.005397656,neg,ns,2.267794825,0.000393473,0.000221104,1.779585664,0.076123392,pos,ns,0.53179191,Mecom,Mecom_Intron,3,30103939,30103988,30103987,30103988,50,-,CTACAAGAATTCAACTGCTGAAGTTCATTTCCTGTCTTTAATTCTAAACG,"Intron (Mecom-212/Mecom, intron 1 of 15)",3,29951299,30509733,558435,2,Mecom-212,405745,Mecom-212;Mecom-203;Mecom-210;Mecom-213;Mecom-207;Mecom-208;Mecom-211,Mecom;Mecom;Mecom;Mecom;Mecom;Mecom;Mecom,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,80,14013,ENSMUSG00000027684,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11292,cg12818000,0.0000949,0.00000806,11.77515706,1.05E-26,gain,yes,-0.00000769,0.0000137,-0.562134106,0.574430875,neg,ns,0.008459306,0.004009627,2.109749061,0.035681216,pos,ns,1.447560349,0.000234187,0.000137891,1.698351554,0.090444828,pos,ns,0.24169253,Hand2,Hand2_Exon,8,57353962,57354011,57353962,57353963,50,-,CGGAATGTCCTGTGTGCCACATGGAGCTTGGGGAAAGGAAATGATTAAAG,"Exon (5033428I22Rik-203/5033428I22Rik-203, exon 3 of 3)",8,57320983,57324633,3651,1,Hand2-201,33028,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,9,15111,ENSMUSG00000038193,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
21834,cg01267062,-0.0000056,0.00000466,-1.201807777,0.230355294,loss,ns,0.00000445,0.00000792,0.562089343,0.574461334,pos,ns,-0.003862358,0.002319272,-1.665332109,0.096856738,neg,ns,1.013870159,0.00000227,0.0000798,0.028522212,0.977264005,pos,ns,0.855080638,Lmo1,Lmo1_Intergenic_upstream,7,109231983,109232032,109231983,109231984,50,+,CGGCATAATTACTCTGACAGAGCTGTAGCCACGGGGCCTGTGAGTGGGGC,Distal Intergenic,7,109138675,109175207,36533,2,Lmo1-202,-56776,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,34,66,109594,ENSMUSG00000036111,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26445,cg15841408,0.000000942,0.00000239,0.39440842,0.693550721,gain,ns,-0.00000228,0.00000406,-0.561856718,0.574619635,neg,ns,-0.001398161,0.001189266,-1.175650393,0.240636718,neg,ns,0.618638104,0.0000526,0.0000409,1.286958789,0.199068783,pos,ns,0.04152575,Foxa2,Foxa2_Intergenic_downstream,2,148040414,148040463,148040462,148040463,50,-,AATTTGCTGAAGTGTGACGTGGCATGGAAAGTTTACCCTCCTGGAATTCG,Distal Intergenic,2,148044240,148045464,1225,2,Foxa2-203,5050,Foxa2-202;Foxa2-201;Foxa2-204;Foxa2-203,Foxa2;Foxa2;Foxa2;Foxa2,0;0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,25,15376,ENSMUSG00000037025,mapped to different genes,2,148040431,148040603,173,*,173,10,0.497109827,0.954219526,0.057803468,0.00000971,CpGisland,TRUE,U3,Pr-B
4706,cg19382283,-0.0000128,0.00000693,-1.852855288,0.064853323,loss,ns,-0.00000661,0.0000118,-0.561827367,0.574639609,neg,ns,-0.001136949,0.003447623,-0.329777716,0.74179065,neg,ns,0.129718645,-0.0000637,0.000118563,-0.537018983,0.59163972,neg,ns,0.877108643,Gm19640,Gm19640_Intergenic_upstream,9,30196766,30196815,30196814,30196815,50,-,TCGGTTCTAAGACTTTATGATCACATTGTCTCACAGGCAGCTTGACAACG,Distal Intergenic,9,30063256,30063719,464,2,Gm19640-201,-133096,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,4,100503335,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14794,cg16644469,-0.0000123,0.0000038,-3.235905116,0.001343655,loss,ns,0.00000362,0.00000645,0.561812509,0.574649721,pos,ns,-0.002461283,0.00189015,-1.302162248,0.193827589,neg,ns,0.712584406,-0.0000482,0.000065,-0.740963547,0.459276432,neg,ns,0.051115396,Nufip2,Nufip2_fiveUTR,11,77686220,77686269,77686220,77686221,50,+,CGCTTTCAATGGAGGAGAAGCCCGGCCAGCCACAGCCTCAGCACCATCAC,Promoter (<=1kb),11,77686155,77712741,26587,1,Nufip2-201,65,Nufip2-201;Nufip2-204;Nufip2-202;Nufip2-203,Nufip2;Nufip2;Nufip2;Nufip2,0;0;-1190;-1332,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,10,68564,ENSMUSG00000037857,conserved gene and region,11,77685817,77686243,427,*,427,32,0.597189696,0.870096791,0.074941452,1.51E-20,CpGisland,TRUE,U1,Pr-A
16362,cg08122881,-0.0000151,0.00000742,-2.032783889,0.042926256,loss,ns,-0.00000708,0.0000126,-0.56170207,0.574724883,neg,ns,-0.00992132,0.003691654,-2.68749999,0.007587594,neg,ns,2.119895906,0.000474908,0.000126956,3.74074122,0.000218542,pos,ns,0.865295698,Nfix,Nfix_Exon,8,84772122,84772171,84772122,84772123,50,-,CGGGATGCCCACTTCTGCTTGATCTCGGGCTTCTCGCCCAGCAGCTCGTC,"Exon (Nfix-204/Nfix, exon 2 of 11)",8,84704712,84773396,68685,2,Nfix-204,1225,Nfix-204;Nfix-201;Nfix-202;Nfix-203;Nfix-205,Nfix;Nfix;Nfix;Nfix;Nfix,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,20,49,18032,ENSMUSG00000001911,conserved gene but different region,8,84771960,84772433,474,*,474,36,0.61814346,0.805285512,0.075949367,3.03E-23,CpGisland,TRUE,U13,Hc-P
11581,cg11519900,-0.0000118,0.0000138,-0.856266496,0.392511769,loss,ns,0.0000132,0.0000235,0.561631667,0.574772801,pos,ns,-0.000648605,0.006878177,-0.094299011,0.924932556,neg,ns,0.033889934,-0.000199812,0.00023654,-0.844729312,0.398913438,neg,ns,0.775279558,Fgf13,Fgf13_Exon,X,59250907,59250956,59250955,59250956,50,-,GGATGGAATCTTGTCGTAACATAATGTATTCCTGTGTGCCAGGGGGGGCG,"Exon (Fgf13-205/Fgf13, exon 2 of 3)",20,59062145,59568071,505927,2,Fgf13-203,317115,Fgf13-203;Fgf13-205;Fgf13-206;Fgf13-208,Fgf13;Fgf13;Fgf13;Fgf13,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,9,14168,ENSMUSG00000031137,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2907,cg25205034,-0.00000438,0.0000023,-1.902017303,0.058095624,loss,ns,0.0000022,0.00000392,0.561591054,0.574800443,pos,ns,0.001291006,0.00114706,1.125490488,0.261251849,pos,ns,0.582940627,0.0000174,0.0000394,0.440518862,0.659868371,pos,ns,0.940850408,Ehbp1,Ehbp1_Intron,11,22045536,22045585,22045584,22045585,50,+,ACTTGACAATTCTTGTTCAATTATCTCTATTATTTAATGCGCTGTGAACG,"Intron (Ehbp1-201/Ehbp1, intron 20 of 23)",11,22005828,22285838,280011,2,Ehbp1-201,240253,Ehbp1-201;Ehbp1-202;Ehbp1-207,Ehbp1;Ehbp1;Ehbp1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,34,45,216565,ENSMUSG00000042302,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8674,cg06961931,-0.00000847,0.00000554,-1.529068344,0.127267221,loss,ns,-0.00000528,0.00000941,-0.561528337,0.574843132,neg,ns,-0.002143277,0.002756433,-0.777554476,0.437424687,neg,ns,0.35909671,0.0000539,0.0000948,0.569032023,0.569746442,pos,ns,0.891195564,Dscaml1,Dscaml1_Intron,9,45530732,45530781,45530732,45530733,50,+,CGGCATTATTATCATTAATAAGCCCATAATGGGGAAGAGAAATTATAAAC,"Intron (Dscaml1-208/Dscaml1, intron 5 of 5)",9,45426628,45571224,144597,1,Dscaml1-208,104104,Dscaml1-208;Dscaml1-209;Dscaml1-202;Dscaml1-211;Dscaml1-201;Dscaml1-210,Dscaml1;Dscaml1;Dscaml1;Dscaml1;Dscaml1;Dscaml1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,32,114873,ENSMUSG00000032087,conserved gene and region,9,45530575,45530733,159,*,159,10,0.446540881,1.261904762,0.062893082,0.00000467,CpGisland,TRUE,NA,NRS
6686,cg00418401,-0.0000335,0.00000748,-4.487619698,0.0000102,loss,ns,-0.00000713,0.0000127,-0.561524232,0.574845926,neg,ns,-0.002633459,0.003720726,-0.707780985,0.479613061,neg,ns,0.319108999,0.000124198,0.000127955,0.970636391,0.332486086,pos,ns,0.871187036,Arap3,Arap3_Intergenic_upstream,18,38017575,38017624,38017623,38017624,50,-,CAGCTGGGCTCAAGCCGGGAAATGAATATAAGTTGCATTTCTATGCATCG,Distal Intergenic,18,37996312,37998969,2658,2,Arap3-203,-18655,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,10,106952,ENSMUSG00000024451,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26260,cg19327615,0.0000481,0.0000221,2.172044444,0.030610018,gain,ns,-0.0000211,0.0000376,-0.561452362,0.574894847,neg,ns,0.022072148,0.011013649,2.004072219,0.045932,pos,ns,1.337884648,-0.000456263,0.000378758,-1.204627983,0.229265814,neg,ns,0.53011952,Rin2,Rin2_threeUTR,2,145860104,145860153,145860152,145860153,50,+,TGCGTCAGCTCTGCCTTATAAATGGAGTGCATTCTATCAAAACCAGGACG,3' UTR,2,145785980,145887616,101637,1,Rin2-202,74124,Rin2-202;Rin2-201;Rin2-208;Rin2-207,Rin2;Rin2;Rin2;Rin2,0;0;0;-2491,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,4,74030,ENSMUSG00000001768,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
13367,cg15747552,-0.000108046,0.0000143,-7.544739828,5.07E-13,loss,yes,0.0000137,0.0000243,0.561432892,0.5749081,pos,ns,-0.022011671,0.00712756,-3.088247576,0.002195565,neg,ns,2.658453708,0.000346806,0.000245116,1.414863619,0.158112167,pos,ns,0.76679259,Nr2f2,Nr2f2_Exon,7,70347600,70347649,70347648,70347649,50,+,ATGGGGTGCGTGATTACATCCTAGTTATAGACAGAACATAAAGACCCACG,"Exon (Gm44948-201/Gm44948-201, exon 1 of 1)",7,70353074,70355237,2164,2,Nr2f2-203,7588,Nr2f2-201,Nr2f2,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,24,69,11819,ENSMUSG00000030551,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14477,cg04268384,0.00000184,0.00000368,0.499124494,0.618045696,gain,ns,0.00000351,0.00000626,0.561359088,0.57495834,pos,ns,0.001936554,0.001833073,1.056451931,0.291584382,pos,ns,0.535235742,-0.0000721,0.000063,-1.143583443,0.253678749,neg,ns,0.935234935,Agps,Agps_Exon,2,75868365,75868414,75868365,75868366,50,+,CGTATGTCAACAGGCCCTGATATCCATCACTTCATCATGGGATCTGAAGG,Promoter (<=1kb),2,75868383,75877963,9581,1,Agps-204,0,Agps-201;Agps-202;Agps-203;Agps-204,Agps;Agps;Agps;Agps,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,2,228061,ENSMUSG00000042410,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1536,cg25168580,0.0000198,0.0000046,4.299427653,0.000023,gain,ns,-0.00000439,0.00000781,-0.561311183,0.57499095,neg,ns,-0.000601987,0.002289248,-0.262962726,0.792753992,neg,ns,0.100861562,-0.000129473,0.0000787,-1.644581456,0.101069785,neg,ns,0.884735649,Gm11826,Gm11826_Intergenic_downstream,4,13480588,13480637,13480588,13480589,50,+,CGGGCAGCTGCAGAAACCGCTTGGCTAATTATGAGAATTCACTGTTCGTT,Downstream (2-3kb),4,13482755,13483192,438,2,Gm11826-201,2555,Gm11826-201,Gm11826,2555,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,6,6,100039988,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17609,cg09236325,-0.0000225,0.00000529,-4.251228715,0.0000282,loss,ns,-0.00000504,0.00000899,-0.561254302,0.575029673,neg,ns,0.000999253,0.002632386,0.379599563,0.704502593,pos,ns,0.152117404,-0.0000603,0.0000905,-0.66560682,0.506157386,neg,ns,0.881696405,Elavl2,Elavl2_threeUTR,4,91252252,91252301,91252300,91252301,50,+,CACAAATCAATGTGAGCCACCTATCACATAATAACCAGGATGATCAGACG,3' UTR,4,91250763,91372034,121272,2,Elavl2-204,119733,Elavl2-204;Elavl2-201;Elavl2-207;Elavl2-208;Elavl2-202;Elavl2-209;Elavl2-210;Elavl2-206;Elavl2-203;Elavl2-205,Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,31,15569,ENSMUSG00000008489,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
540,cg20433702,0.0000433,0.000012,3.589884439,0.000384445,gain,ns,-0.0000115,0.0000205,-0.561164803,0.575090603,neg,ns,-0.009399909,0.005996767,-1.567496267,0.118018897,neg,ns,0.928048448,0.000654909,0.000206228,3.175651563,0.001645396,pos,ns,0.337463063,Dlx6,Dlx6_Promoter,6,6861839,6861888,6861839,6861840,50,+,CGACACTGGTGTATAATTAGAGGATAATTTATGCTATATCCACTTTTATT,Promoter (1-2kb),6,6863334,6867970,4637,1,Dlx6-203,-1446,Dlx6-203;Dlx6-202;Dlx6-201;Dlx6-204,Dlx6;Dlx6;Dlx6;Dlx6,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,9,36,13396,ENSMUSG00000029754,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
7640,cg26257324,0.0000488,0.0000212,2.301843935,0.022006647,gain,ns,-0.0000202,0.000036,-0.560893867,0.575275071,neg,ns,0.022663664,0.010557912,2.146604672,0.032600479,pos,ns,1.486776025,-0.000661291,0.000363086,-1.821308946,0.069523642,neg,ns,0.311697378,Zbtb20,Zbtb20_Intron,16,43540014,43540063,43540062,43540063,50,+,ACAACATTACACAATGGATCTTTGGCAGGGATACACAGAAATGAATACCG,"Intron (Zbtb20-211/Zbtb20, intron 4 of 4)",16,42907542,43569781,662240,1,Zbtb20-211,632472,Zbtb20-211;Zbtb20-217;Zbtb20-204;Zbtb20-215;Zbtb20-201;Zbtb20-203;Zbtb20-214;Zbtb20-213;Zbtb20-219;Zbtb20-216;Zbtb20-208;Zbtb20-207;Zbtb20-220;Zbtb20-206;Zbtb20-221;Zbtb20-202;Zbtb20-205,Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,98,56490,ENSMUSG00000022708,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15284,cg23244029,-0.00000228,0.0000139,-0.163833168,0.869969242,loss,ns,-0.0000132,0.0000236,-0.560674211,0.575424646,neg,ns,-0.011948511,0.006921854,-1.726201103,0.085307577,neg,ns,1.069012396,0.00048495,0.000238042,2.037247288,0.042474338,pos,ns,0.3711173,Gm17923,Gm17923_Intergenic_upstream,14,80170754,80170803,80170802,80170803,50,+,AAAGGCTTTCAATTCTGTGTGTCATTATCAAATAATCTTTTTTGTACTCG,Distal Intergenic,14,80214930,80216352,1423,1,Gm17923-201,-44127,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,100416114,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2204,cg21461169,-0.0000035,0.00000118,-2.960783576,0.003305479,loss,ns,-0.00000113,0.00000201,-0.560669234,0.575428036,neg,ns,-0.000472554,0.000588549,-0.802912894,0.422640233,neg,ns,0.374029163,-0.00000401,0.0000202,-0.198070209,0.843119955,neg,ns,0.970603972,Nhsl1,Nhsl1_Exon,10,18516061,18516110,18516061,18516062,50,-,CGGTCTCTAATTTACACAGACACTCTGGTAAGACGACCGAAGAAAGTCAA,"Exon (Nhsl1-208/Nhsl1, exon 5 of 6)",10,18318985,18531973,212989,1,Nhsl1-209,197076,Nhsl1-209;Nhsl1-203;Nhsl1-206;Nhsl1-201;Nhsl1-208;Nhsl1-202,Nhsl1;Nhsl1;Nhsl1;Nhsl1;Nhsl1;Nhsl1,0;0;108386;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,215819,ENSMUSG00000039835,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2726,cg09214592,-0.0000125,0.00000672,-1.857010322,0.064258032,loss,ns,-0.0000064,0.0000114,-0.560586761,0.575484201,neg,ns,-0.00651483,0.003345421,-1.947387264,0.05239097,neg,ns,1.280743562,0.000140958,0.000115049,1.225200795,0.221429653,pos,ns,0.850921862,Kat6b,Kat6b_Exon,14,21625077,21625126,21625125,21625126,50,-,GATGGCCTTACTAAGTTTTTTACACCATCACCTGATGGTCGCAGATCACG,"Exon (Kat6b-201/Kat6b, exon 7 of 17)",14,21499770,21672071,172302,1,Kat6b-206,125307,Kat6b-211;Kat6b-206;Kat6b-204;Kat6b-201;Kat6b-202;Kat6b-208;Kat6b-210;Kat6b-203;Kat6b-214;Kat6b-205;Kat6b-213,Kat6b;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,21,54169,ENSMUSG00000021767,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
313,cg05194811,0.0000151,0.00000768,1.971790594,0.049522336,gain,ns,0.00000731,0.0000131,0.560440111,0.575584077,pos,ns,0.001473593,0.003823496,0.385404608,0.700201988,pos,ns,0.154776661,0.0000265,0.00013149,0.201480831,0.840454758,pos,ns,0.897683713,Klhl29,Klhl29_Exon,12,5093603,5093652,5093651,5093652,50,+,GATGCTGAGGATCTCCTCCTGGGCGGCCACCTCGGGGAAGATCTGCAGCG,"Exon (Klhl29-201/Klhl29, exon 8 of 14)",12,5077472,5375682,298211,2,Klhl29-201,282030,Klhl29-201;Klhl29-202,Klhl29;Klhl29,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,23,208439,ENSMUSG00000020627,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26049,cg24865565,-0.00000114,0.00000915,-0.124553931,0.900957429,loss,ns,0.00000871,0.0000155,0.560376703,0.575627264,pos,ns,-0.00031256,0.004552693,-0.06865387,0.945309399,neg,ns,0.024426024,-0.0000927,0.000156567,-0.592277457,0.554096548,neg,ns,0.804672419,Gm2505,Gm2505_Intergenic_upstream,3,143434213,143434262,143434213,143434214,50,+,CGTTTCAGGCTTTTGTTCAGTCACAAGTTCTGTTTGGATTTATCCTCGGT,Distal Intergenic,3,143872995,143873819,825,1,Gm2505-201,-438733,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,37,100039938,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10534,cg10283598,-0.0000029,0.00000227,-1.278787113,0.201928509,loss,ns,-0.00000216,0.00000385,-0.560291697,0.575685164,neg,ns,0.001062136,0.001129162,0.9406404,0.347621557,pos,ns,0.4588933,-0.0000349,0.0000388,-0.899697533,0.368979578,neg,ns,0.937949749,Gm8594,Gm8594_Intergenic_upstream,18,54058112,54058161,54058160,54058161,50,+,TTCAACAAACAAGAGTTTCCTACTGGGAATGTCAAACAAATCATTCTGCG,Distal Intergenic,18,54030699,54031308,610,2,Gm8594-201,-26804,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,3,667360,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14461,cg21240374,-0.00000345,0.00000149,-2.306509109,0.021741401,loss,ns,-0.00000142,0.00000254,-0.560221254,0.575733146,neg,ns,0.000663929,0.000743437,0.893053322,0.372521355,pos,ns,0.428848826,-0.0000713,0.0000256,-2.790531164,0.005588263,neg,ns,0.958027783,Gm5257,Gm5257_Intergenic_downstream,1,75778984,75779033,75779032,75779033,50,-,CATCTGTTCTGGGCTTGAAAGTTTAATAAAGCTTTTCATTTTCTGAAGCG,Distal Intergenic,1,75636390,75637179,790,1,Gm5257-201,142643,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,383531,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1345,cg07340222,-0.0000279,0.00000763,-3.660966032,0.000295302,loss,ns,0.00000726,0.000013,0.560182407,0.575759608,pos,ns,-0.000616877,0.003798057,-0.162419033,0.871081701,neg,ns,0.05994111,0.000119727,0.000130615,0.916642209,0.360042696,pos,ns,0.901315951,Cadps,Cadps_Intron,14,12393695,12393744,12393743,12393744,50,+,CTCTTTTCACTCTTTATTCTTCCCTTTTTGCTGACAGATGTACAAAGGCG,"Intron (Cadps-210/Cadps, intron 27 of 28)",14,12372563,12823053,450491,2,Cadps-210,429309,Cadps-210;Cadps-202;Cadps-203;Cadps-204;Cadps-201;Cadps-212;Cadps-208,Cadps;Cadps;Cadps;Cadps;Cadps;Cadps;Cadps,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,34,27062,ENSMUSG00000054423,mapped to different genes,14,12393743,12393799,57,*,57,7,0.631578947,1.266666667,0.122807018,0.00000327,CpGisland,TRUE,U15,NS
8885,cg08551218,0.0000138,0.00000483,2.868128496,0.004412254,gain,ns,0.00000459,0.0000082,0.560132506,0.5757936,pos,ns,0.003127041,0.002401707,1.30200757,0.193880395,pos,ns,0.712466104,-0.000326495,0.0000826,-3.95298683,0.0000957,neg,ns,0.132914589,Lrrc73,Lrrc73_Exon,17,46254520,46254569,46254520,46254521,50,+,CGCAGCTCAACCTTAACCTGGGCGTCGTGTCCAGCCCCAGCCGCATCAAG,Promoter (<=1kb),17,46253531,46257308,3778,1,Lrrc73-204,989,Lrrc73-204;Lrrc73-202;Lrrc73-203;Lrrc73-201;Tjap1-203;Tjap1-201;Tjap1-214;Tjap1-202;Tjap1-211;Yipf3-201;Yipf3-202;Yipf3-206;Yipf3-203;Yipf3-204;Yipf3-205,Lrrc73;Lrrc73;Lrrc73;Lrrc73;Tjap1;Tjap1;Tjap1;Tjap1;Tjap1;Yipf3;Yipf3;Yipf3;Yipf3;Yipf3;Yipf3,0;0;0;0;28457;28441;9218;28444;28430;6440;6395;6375;5491;4431;3179,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,224813,ENSMUSG00000071073,conserved gene and region,17,46253728,46254646,919,*,919,103,0.709466812,0.912128045,0.112078346,1.18E-83,CpGisland,TRUE,U3,Pr-B
5440,cg20477718,0.000117908,0.00000797,14.78891027,8.09E-38,gain,yes,-0.00000758,0.0000135,-0.559900544,0.575951623,neg,ns,0.015556588,0.003968125,3.920388045,0.000108858,pos,ns,3.96313979,-0.00010035,0.000136463,-0.735364246,0.462673665,neg,ns,0.177484633,Twist1,Twist1_Exon,12,33958496,33958545,33958544,33958545,50,+,CTCCAAGATGGCAAGCTGCAGCTATGTGGCTCACGAGCGGCTCAGCTACG,Promoter (<=1kb),12,33957671,33959829,2159,1,Twist1-201,825,Twist1-201,Twist1,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,7,22160,ENSMUSG00000035799,conserved gene and region,12,33958529,33958782,254,*,254,18,0.696850394,0.620352782,0.070866142,2.23E-11,CpGisland,TRUE,U3,Pr-B
23330,cg14427100,-0.0000074,0.00000426,-1.738714289,0.083077817,loss,ns,0.00000405,0.00000723,0.559892447,0.57595714,pos,ns,-0.002666677,0.002118825,-1.258563696,0.20913497,neg,ns,0.679573342,-0.00000197,0.0000729,-0.027078053,0.978414902,neg,ns,0.905529494,Slc6a9,Slc6a9_fiveUTR,4,117855928,117855977,117855976,117855977,50,-,CAACTGGGGCAACCAGATCGAGTTTGTACTGACGAGCGTGGGCTATGCCG,5' UTR,4,117834506,117869296,34791,1,Slc6a9-202,21422,Slc6a9-202;Slc6a9-201;Slc6a9-207;Slc6a9-210;Slc6a9-206;Slc6a9-204;Slc6a9-211;Slc6a9-209;Slc6a9-203;Slc6a9-205,Slc6a9;Slc6a9;Slc6a9;Slc6a9;Slc6a9;Slc6a9;Slc6a9;Slc6a9;Slc6a9;Slc6a9,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,8,14664,ENSMUSG00000028542,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23600,cg13680369,-0.00000673,0.00000198,-3.402852014,0.000754434,loss,ns,-0.00000188,0.00000336,-0.559866698,0.575974682,neg,ns,-0.001413498,0.000984436,-1.435844869,0.152054765,neg,ns,0.817999966,-0.00000609,0.0000339,-0.17977103,0.857449778,neg,ns,0.963685337,Gm3508,Gm3508_Intergenic_upstream,1,119255489,119255538,119255537,119255538,50,-,TCATTACGAGTGTCAGTGATGAACACGAAACCATTCCAAGAAATGTCTCG,Distal Intergenic,1,119241962,119242753,792,2,Gm3508-201,-12785,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,8,100041778,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
893,cg07874065,0.0000136,0.0000323,0.421754586,0.673496471,gain,ns,0.0000308,0.0000549,0.559850934,0.575985422,pos,ns,0.044417499,0.016092236,2.760181958,0.00612081,pos,ns,2.213191128,-0.001304156,0.000553411,-2.356579888,0.019065979,neg,ns,0.567496891,Dip2c,Dip2c_Exon,13,9494802,9494851,9494850,9494851,50,-,GAATTAATTAGTTTTTTTTCAACTTGTTACAGCAGCGAATGGAGCTGCCG,"Exon (Dip2c-202/Dip2c, exon 3 of 36)",13,9276528,9668928,392401,1,Dip2c-203,218274,Dip2c-203;Dip2c-202;Dip2c-201,Dip2c;Dip2c;Dip2c,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,208440,ENSMUSG00000048264,conserved gene and region,13,9494837,9495001,165,*,165,18,0.660606061,1.014344262,0.109090909,9.37E-15,CpGisland,TRUE,U2,Pr-W
7571,cg16030772,-0.00000325,0.00000174,-1.869203194,0.062537278,loss,ns,0.00000165,0.00000295,0.559786503,0.57602932,pos,ns,-0.000561329,0.000864948,-0.648974531,0.516835328,neg,ns,0.286647808,0.0000158,0.0000297,0.531903432,0.595173851,pos,ns,0.966973938,Zbtb20,Zbtb20_Intron,16,43278507,43278556,43278507,43278508,50,-,CGAAAAAGTTGTCATTTGCATAATGCCTGCCATTAATTATTGTGAGACTA,"Intron (Zbtb20-209/Zbtb20, intron 5 of 7)",16,42875881,43463175,587295,1,Zbtb20-209,402626,Zbtb20-209;Zbtb20-211;Zbtb20-217;Zbtb20-218;Zbtb20-204;Zbtb20-215;Zbtb20-212;Zbtb20-201;Zbtb20-203,Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,98,56490,ENSMUSG00000022708,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13539,cg07964264,-0.00003,0.0000113,-2.643015461,0.008634653,loss,ns,-0.0000108,0.0000193,-0.559598503,0.576157418,neg,ns,-0.010180484,0.005642833,-1.804144242,0.072179243,neg,ns,1.141587677,0.000553056,0.000194057,2.849975518,0.00466514,pos,ns,0.891599196,Gm10172,Gm10172_Exon,7,71224271,71224320,71224271,71224272,50,-,CGACATAATATCTGGGCGACAACAGTGCGCTAACAGTGCAGTGACTTCCA,"Exon (6030442E23Rik-201/6030442E23Rik-201, exon 2 of 2)",7,71332363,71332921,559,2,Gm10172-201,108650,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,31,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
606,cg23618499,-0.0000478,0.00000955,-5.003171451,0.000000947,loss,yes,-0.00000908,0.0000162,-0.559582886,0.576168059,neg,ns,-0.004904325,0.004754724,-1.031463607,0.303127511,neg,ns,0.518374646,-0.000135541,0.000163515,-0.828921795,0.407786437,neg,ns,0.802459039,Gm8725,Gm8725_Intergenic_upstream,13,7182428,7182477,7182428,7182429,50,+,CGATGATTATGTGTTATTTTAACAGGAGAATGACAATAATTTCCTGTAAT,Distal Intergenic,13,7307802,7309134,1333,1,Gm8725-201,-125325,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,2,667611,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23362,cg05983884,-0.0000117,0.0000137,-0.859971685,0.390469212,loss,ns,0.000013,0.0000232,0.559513435,0.576215385,pos,ns,0.040934485,0.006796564,6.022820265,4.85E-09,pos,ns,8.314449306,-0.001250145,0.000233733,-5.348596159,0.000000172,neg,yes,0.241556447,Hrk,Hrk_Intron,5,118167477,118167526,118167525,118167526,50,+,AAACAGGGTAATAATCGTCCCATTAAAATTAATGTCCATGAAGTGAGCCG,"Intron (Hrk-202/Hrk, intron 1 of 1)",5,118164648,118184828,20181,1,Hrk-202,2829,Hrk-202;Hrk-201,Hrk;Hrk,0;-2222,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,4,12123,ENSMUSG00000046607,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
14023,cg15195644,-0.00000989,0.00000368,-2.68769986,0.00758316,loss,ns,-0.0000035,0.00000625,-0.55934887,0.576327531,neg,ns,-0.00572317,0.001832358,-3.123390307,0.001956643,neg,ns,2.708488483,0.00021905,0.000063,3.476182157,0.000581205,pos,ns,0.931099201,Gm13668,Gm13668_Intergenic_upstream,2,74243816,74243865,74243864,74243865,50,-,CCATTGTCATGCAAGCACAGTTGTAAGTAATAATGTGGCCTTTAATGACG,Distal Intergenic,2,73959669,73960669,1001,2,Gm13668-201,-283196,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,18,20,667729,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8944,cg03224633,-0.00000135,0.00000384,-0.351751779,0.725263401,loss,ns,-0.00000365,0.00000652,-0.559299629,0.576361089,neg,ns,0.001854165,0.001911401,0.970055241,0.332775201,pos,ns,0.477849045,-0.0000619,0.0000657,-0.942134491,0.346857398,neg,ns,0.892475462,4931429L15Rik,4931429L15Rik_Intron,9,46383688,46383737,46383688,46383689,50,+,CGATTGCCATGCAAATTAATTGAATTCATGAAATCCACATTGCTGGGTAA,"Intron (Gm31374-201/Gm31374-201, intron 4 of 4)",9,46303361,46319986,16626,2,4931429L15Rik-201,-63702,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,22,74361,ENSMUSG00000056617,mapped to different genes,9,46383595,46383693,99,*,99,9,0.515151515,1.383540373,0.090909091,0.000000843,CpGisland,TRUE,U11,Tr-P
20924,cg21784061,0.000000324,0.00000307,0.105814194,0.915798212,gain,ns,0.00000291,0.00000521,0.559242249,0.576400195,pos,ns,0.002235806,0.001525995,1.46514629,0.143894466,pos,ns,0.841955908,-0.0000366,0.0000525,-0.696978008,0.486338882,neg,ns,0.10138845,Lrrc8d,Lrrc8d_fiveUTR,5,105699999,105700048,105700047,105700048,50,+,TACGCTTTGTCTAATTCCCCTCGTTACAGAGTCATGTGCTGCTGCTCCCG,Promoter (<=1kb),5,105699969,105815215,115247,1,Lrrc8d-201,30,Lrrc8d-201;Lrrc8d-202;Lrrc8d-207;Lrrc8d-205,Lrrc8d;Lrrc8d;Lrrc8d;Lrrc8d,0;0;-762;-818,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,3,231549,ENSMUSG00000046079,conserved gene and region,5,105699700,105700550,851,*,851,114,0.752056404,0.948328446,0.133960047,1.13E-102,CpGisland,TRUE,U1,Pr-A
4376,cg01975800,-0.00000126,0.00000291,-0.434155833,0.664477295,loss,ns,0.00000277,0.00000495,0.559117675,0.5764851,pos,ns,0.000186019,0.001450127,0.128277401,0.898012627,pos,ns,0.046717557,-0.0000276,0.0000499,-0.553166977,0.580547773,neg,ns,0.942237046,Opcml,Opcml_Intron,9,28631229,28631278,28631229,28631230,50,+,CGACGTTTAGACAAATGAGGATAATTATGTGTTCTCCAGCTCTTTGAGAG,"Intron (Opcml-202/Opcml, intron 2 of 7)",9,27790947,28925410,1134464,1,Opcml-202,840282,Opcml-202;Opcml-201;Opcml-204;Opcml-208,Opcml;Opcml;Opcml;Opcml,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,12,330908,ENSMUSG00000062257,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19952,cg15249459,-0.00000377,0.00000189,-2.000561008,0.046311521,loss,ns,-0.00000179,0.0000032,-0.559043576,0.576535606,neg,ns,0.001169016,0.000938532,1.245579821,0.2138593,pos,ns,0.66987186,-0.0000554,0.0000323,-1.715676182,0.08722047,neg,ns,0.944409757,Clpb,Clpb_Intron,7,101746493,101746542,101746541,101746542,50,-,CACTGACAGAAACATATTTCCCCAATGAGTGACCTTCCACAGCTGTAGCG,"Intron (Clpb-201/Clpb, intron 5 of 15)",7,101663633,101790168,126536,1,Clpb-201,82860,Clpb-201;Clpb-202;Clpb-211;Clpb-208;Clpb-207;Clpb-210,Clpb;Clpb;Clpb;Clpb;Clpb;Clpb,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,21,21,20480,ENSMUSG00000001829,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27643,cg09598225,0.0000168,0.00000317,5.303030554,0.000000217,gain,yes,0.00000301,0.00000539,0.559038089,0.576539346,pos,ns,0.004544855,0.001577716,2.880654255,0.004245108,pos,ns,2.37211129,-0.000111268,0.0000543,-2.050729388,0.041133758,neg,ns,0.070094685,Gm20721,Gm20721_threeUTR,2,174330353,174330402,174330353,174330354,50,+,CGTGAGGCCAACAAAAAGATCGAGAAGCAGCTGCAGAAGGACAAGCAGGT,3' UTR,2,174330319,174346712,16394,2,Gm20721-201,16310,Gm20721-201;Gnas-222;Gnas-211;Gnas-215;Gnas-214;Gnas-201;Gnas-209;Gnas-220;Gnas-223;Gnas-224;Gnas-203;Gnas-212;Gnas-221;Gnas-219;Gnas-227;Gnas-217;Gnas-202;Gnas-218;Gnas-207;Gnas-226;Gnas-208;Gnas-206;Gnas-205,Gm20721;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas,0;0;0;0;0;0;0;0;0;0;0;0;0;2623;2596;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,9,10,,NA,mapped to different genes,2,174329643,174330863,1221,*,1221,154,0.773955774,0.845096629,0.126126126,9.62E-134,CpGisland,TRUE,U1,Pr-A
5448,cg06134368,0.0000589,0.0000131,4.514345908,0.00000903,gain,ns,0.0000124,0.0000222,0.559020897,0.576551065,pos,ns,0.027429572,0.006497239,4.221727429,0.0000319,pos,ns,4.496334423,-0.000848367,0.00022344,-3.796852684,0.000176289,neg,ns,0.464540037,Mvb12b,Mvb12b_Intergenic_upstream,2,33966733,33966782,33966733,33966734,50,-,CGTTACAGAGCACAGGTACTGGCTAAATGTGTCCGATCATTCATCATGAT,Distal Intergenic,2,33729953,33887946,157994,2,Mvb12b-201,-78836,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,16,47,72543,ENSMUSG00000038740,mapped to different genes,2,33966422,33966984,563,*,563,36,0.555950266,0.830587657,0.063943162,1.24E-20,CpGisland,TRUE,NA,NRS
2032,cg16544686,0.000064,0.0000144,4.436096196,0.0000127,gain,ns,-0.0000137,0.0000245,-0.558970914,0.576585135,neg,ns,0.023986766,0.007182825,3.33946112,0.00094187,pos,ns,3.026009086,-0.000665291,0.000247017,-2.693301075,0.007459835,neg,ns,0.381932626,Met,Met_Exon,6,17549052,17549101,17549052,17549053,50,+,CGCTACGATGCAAGAGTACACACTCCTCATTTGGATAGGCTTGTAAGTGC,"Exon (Met-203/Met, exon 15 of 22)",6,17463800,17573980,110181,1,Met-203,85252,Met-203;Met-202;Met-201;Met-207;Met-206,Met;Met;Met;Met;Met,0;0;0;14051;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,17295,ENSMUSG00000009376,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26081,cg13144187,0.00000175,0.000008,0.218851628,0.826909642,gain,ns,0.0000076,0.0000136,0.558803562,0.576699215,pos,ns,0.003518403,0.003984098,0.883111372,0.377860416,pos,ns,0.422668602,-0.000237668,0.000137013,-1.734638308,0.083798857,neg,ns,0.85816247,Pak3,Pak3_Intron,X,143713942,143713991,143713942,143713943,50,-,CGTCACAGGCCCAAAAGAAGCTTGCATCAAAGTGCTTCTTTGAGATGTCA,"Intron (Pak3-201/Pak3, intron 4 of 15)",20,143518591,143797792,279202,1,Pak3-201,195351,Pak3-201;Pak3-207;Pak3-205;Pak3-209;Pak3-208;Pak3-204;Pak3-202;Pak3-203;Pak3-210,Pak3;Pak3;Pak3;Pak3;Pak3;Pak3;Pak3;Pak3;Pak3,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,9,18481,ENSMUSG00000031284,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16098,cg21186665,-0.0000227,0.00000587,-3.864001397,0.00013586,loss,ns,-0.00000557,0.00000997,-0.55865632,0.576799595,neg,ns,-0.003262083,0.002920597,-1.116923243,0.26489207,neg,ns,0.576931043,0.0000706,0.000100439,0.703089641,0.482527562,pos,ns,0.86816468,Bnc2,Bnc2_Intron,4,84404096,84404145,84404144,84404145,50,-,CAGTTTTGACTGCCTGTGTGACACCTGTTTTTGTCTCCTCTGATCCTACG,"Intron (Bnc2-201/Bnc2, intron 5 of 7)",4,84275095,84675034,399940,2,Bnc2-201,270889,Bnc2-201;Bnc2-202;Bnc2-214;Bnc2-215;Bnc2-206;Bnc2-211;Bnc2-205;Bnc2-217;Bnc2-207;Bnc2-212;Bnc2-203;Bnc2-209;Bnc2-221;Bnc2-204,Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,91,242509,ENSMUSG00000028487,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12313,cg07763739,-0.0000294,0.00000564,-5.203792851,0.000000356,loss,yes,0.00000536,0.00000959,0.558647424,0.57680566,pos,ns,-0.001989294,0.002808483,-0.708316308,0.479281106,neg,ns,0.319409691,-0.000118424,0.0000966,-1.226129417,0.221080548,neg,ns,0.885000989,Pinx1,Pinx1_Intron,14,63883970,63884019,63883970,63883971,50,-,CGGCTTGAGGGACTCTGCTAGAGAGAAACAGGCTGTTGATAAATGGTTTT,"Intron (Pinx1-201/Pinx1, intron 6 of 6)",14,63860364,63919855,59492,1,Pinx1-201,23606,Pinx1-201,Pinx1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,72400,ENSMUSG00000021958,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3786,cg12108366,-0.000000907,0.00000372,-0.243730846,0.807600497,loss,ns,-0.00000353,0.00000632,-0.558587208,0.576846714,neg,ns,0.001608668,0.001852662,0.868301027,0.385901255,pos,ns,0.413523809,-0.000221511,0.0000637,-3.476709228,0.000580107,neg,ns,0.812468929,Nlgn1,Nlgn1_Exon,3,25433841,25433890,25433841,25433842,50,-,CGGTCCGAAGAACCACCTCATGTGGATGAATGGACTCACATTCATGATCC,"Exon (Nlgn1-205/Nlgn1, exon 8 of 8)",3,25426215,26332460,906246,2,Nlgn1-205,898570,Nlgn1-205;Nlgn1-201;Nlgn1-202;Nlgn1-203,Nlgn1;Nlgn1;Nlgn1;Nlgn1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,7,192167,ENSMUSG00000063887,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16920,cg03612672,0.0000103,0.0000102,1.008488543,0.314006494,gain,ns,-0.00000967,0.0000173,-0.558532806,0.576883806,neg,ns,-0.015174542,0.005072687,-2.991420597,0.002999637,neg,ns,2.522931363,0.000212649,0.000174449,1.218973304,0.22378107,pos,ns,0.758185798,Ascl1,Ascl1_Intergenic_downstream,10,87394552,87394601,87394552,87394553,50,+,CGGTTAGATTACCATTGAACTTGTAAAATTAGAGGAAGGAGTCAGATTCT,Distal Intergenic,10,87490819,87493660,2842,2,Ascl1-201,99059,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,11,11,17172,ENSMUSG00000020052,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10641,cg21522167,-0.0000553,0.00000713,-7.758501822,1.25E-13,loss,yes,0.00000677,0.0000121,0.55850496,0.576902791,pos,ns,-0.000918803,0.003549781,-0.258833764,0.795935284,neg,ns,0.099122242,-0.00089839,0.000122077,-7.359224834,1.67E-12,neg,yes,0.895955334,Ankrd44,Ankrd44_Exon,1,54778309,54778358,54778309,54778310,50,-,CGGTGCAGTGGAGTCAGCCACATGTTGTCCTTGGCATTTACACGAGCTCC,"Exon (Ankrd44-210/Ankrd44, exon 4 of 28)",1,54645340,54926387,281048,2,Ankrd44-210,148029,Ankrd44-210;Ankrd44-201;Ankrd44-209;Ankrd44-214;Ankrd44-208;Ankrd44-202,Ankrd44;Ankrd44;Ankrd44;Ankrd44;Ankrd44;Ankrd44,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,329154,ENSMUSG00000052331,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18982,cg16423386,-0.00000679,0.000023,-0.295375069,0.767905113,loss,ns,-0.0000218,0.0000391,-0.558332612,0.577020308,neg,ns,0.052834468,0.011447271,4.615463877,0.00000575,pos,ns,5.240282962,-0.001218579,0.000393671,-3.095427523,0.00214467,neg,ns,0.541730226,Nfia,Nfia_Intron,4,98108696,98108745,98108744,98108745,50,-,TAAATTAGGCAGAATAAATACTTCAATGTGTTTGCAGTGGGCCTGCTACG,"Intron (Nfia-202/Nfia, intron 10 of 10)",4,97777608,98118871,341264,1,Nfia-202,331088,Nfia-202;Nfia-203;Nfia-205;Nfia-201;Nfia-204,Nfia;Nfia;Nfia;Nfia;Nfia,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,44,18027,ENSMUSG00000028565,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
4216,cg11592548,0.000114573,0.00000723,15.83701692,8.38E-42,gain,yes,-0.00000686,0.0000123,-0.558326457,0.577024505,neg,ns,0.000399257,0.003600697,0.11088322,0.911780706,pos,ns,0.040109602,0.00013483,0.000123828,1.088850723,0.277065465,pos,ns,0.643162178,Map3k10,Map3k10_Exon,7,27673363,27673412,27673411,27673412,50,-,CGGTGGATGATGGGCACAGGGGCATCATTGTGTAGGTAGTTCATGCCCCG,"Exon (Map3k10-201/Map3k10, exon 1 of 10)",7,27656375,27674594,18220,2,Map3k10-201,1182,Map3k10-201;Map3k10-202;Map3k10-203;Map3k10-204,Map3k10;Map3k10;Map3k10;Map3k10,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,269881,ENSMUSG00000040390,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U4,Pr-F
26963,cg13766291,0.000000582,0.00000339,0.171661529,0.863815634,gain,ns,-0.00000321,0.00000576,-0.558297895,0.577043981,neg,ns,-0.002997243,0.001686892,-1.776784773,0.076584236,neg,ns,1.115860617,0.0000886,0.000058,1.527568898,0.12763926,pos,ns,0.940123771,Myh7b,Myh7b_Exon,2,155615431,155615480,155615479,155615480,50,-,CACCAAGCGGGTCATTCAGTACTTTGCCATCGTCGCTGCCCTGGGAGACG,"Exon (Myh7b-201/Myh7b, exon 7 of 42)",2,155611212,155634307,23096,1,Myh7b-201,4219,Myh7b-201,Myh7b,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,6,668940,ENSMUSG00000074652,conserved gene and region,2,155615401,155615515,115,*,115,11,0.626086957,0.98828125,0.095652174,1.73E-08,CpGisland,TRUE,U11,Tr-P
20934,cg23077636,0.00000244,0.00000158,1.548788526,0.12245282,gain,ns,0.00000149,0.00000268,0.558051461,0.577212036,pos,ns,0.002018009,0.00078442,2.57261242,0.010558568,pos,ns,1.976394991,-0.0000297,0.000027,-1.102133081,0.271258746,neg,ns,0.967142095,Elp4,Elp4_Intron,2,105720247,105720296,105720295,105720296,50,+,GGTATAAAATAGACATTATCGCAATATTGTATCGCACACCAAGATGCTCG,"Intron (Elp4-202/Elp4, intron 9 of 9)",2,105701027,105904564,203538,2,Elp4-202,184268,Elp4-202,Elp4,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,16,77766,ENSMUSG00000027167,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9700,cg03895257,0.0000312,0.00000555,5.629280679,4.05E-08,gain,yes,0.00000526,0.00000943,0.557900992,0.57731466,pos,ns,0.00849656,0.002761362,3.076945175,0.00227794,pos,ns,2.642457701,-0.000162547,0.000095,-1.71168733,0.087954468,neg,ns,0.111023278,Gm7481,Gm7481_Exon,12,50120536,50120585,50120536,50120537,50,-,CGGGGACAAGACGAGGGTCCTTAGTGAAGGTGTTTGTTGTTAAATAGAAC,"Exon (Gm40418-201/Gm40418-201, exon 1 of 3)",12,49840757,49841751,995,2,Gm7481-201,-278834,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,37,665077,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4482,cg09829592,-0.0000187,0.00000295,-6.363434594,7.08E-10,loss,yes,-0.00000279,0.000005,-0.557681399,0.577464443,neg,ns,0.000598774,0.001465956,0.408453149,0.683223015,pos,ns,0.165437513,-0.0000646,0.0000504,-1.280908555,0.201183222,neg,ns,0.916566832,Srsf3,Srsf3_threeUTR,17,29040675,29040724,29040723,29040724,50,-,ACATTCACTGGGCCCAACAGTGAGATTGAAAAGTTGGGAAATGCCTCACG,3' UTR,17,29032628,29043373,10746,1,Srsf3-202,8047,Srsf3-202;Srsf3-201;Srsf3-204;Srsf3-209;Srsf3-208;Srsf3-203;Srsf3-206;Srsf3-205;Srsf3-207,Srsf3;Srsf3;Srsf3;Srsf3;Srsf3;Srsf3;Srsf3;Srsf3;Srsf3,0;0;0;7986;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,7,20383,ENSMUSG00000071172,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20114,cg23278196,0.0000139,0.0000032,4.331323326,0.00002,gain,ns,-0.00000303,0.00000544,-0.557560299,0.577547053,neg,ns,0.002341585,0.001594633,1.468416538,0.143005057,pos,ns,0.844648606,-0.000063,0.0000548,-1.14864655,0.251587281,neg,ns,0.014687242,Atp5g2,Atp5g2_fiveUTR,15,102672299,102672348,102672299,102672300,50,+,CGGCGATAAAAACCGCCGCTGAAAGCCCACGGAGCAATTTCCCGGGACCC,Promoter (<=1kb),15,102665801,102672352,6552,2,Atp5g2-203,4,Atp5g2-202;Atp5g2-201;Atp5g2-204;Atp5g2-203,Atp5g2;Atp5g2;Atp5g2;Atp5g2,-1172;-4550;-4556;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,8,18,67942,ENSMUSG00000062683,mapped to different genes,15,102672078,102672489,412,*,412,37,0.621359223,0.940117176,0.089805825,1.33E-26,CpGisland,TRUE,U1,Pr-A
25008,cg08327352,-0.00000932,0.00000455,-2.047169082,0.041484226,loss,ns,0.00000431,0.00000773,0.557542358,0.577559292,pos,ns,-0.00180468,0.002264698,-0.796874404,0.426133856,neg,ns,0.37045396,-0.0000235,0.0000779,-0.301626937,0.763138708,neg,ns,0.910826293,Fgfr2,Fgfr2_Intron,7,131497648,131497697,131497648,131497649,50,+,CGAAGCTGTTATGACACTAGAAATTGCTTTATTGATAGCCTCGCCTCTCG,"Intron (Fgfr2-217/Fgfr2, intron 2 of 6)",7,130162451,133123350,2960900,2,Fgfr2-217,1625653,Fgfr2-217;Gm45105-201,Fgfr2;Gm45105,0;-3745,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,58,79,14183,ENSMUSG00000030849,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16435,cg06454786,-0.0000112,0.00000273,-4.103671154,0.000052,loss,ns,0.00000259,0.00000464,0.557517426,0.5775763,pos,ns,-0.002646183,0.001359787,-1.946026787,0.052554922,neg,ns,1.279386607,-0.00000433,0.0000468,-0.092509047,0.926353358,neg,ns,0.949507479,Cntln,Cntln_Intron,4,84988091,84988140,84988091,84988092,50,-,CGTAGCTTTCTTGTCAGTTTTTAATAATTACAGGCTATTATGGAATGCAT,"Intron (Cntln-201/Cntln, intron 8 of 25)",4,84884309,85131921,247613,1,Cntln-201,103782,Cntln-201;Cntln-204,Cntln;Cntln,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,25,338349,ENSMUSG00000038070,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27419,cg03263620,-0.000000253,0.00000202,-0.124886744,0.900694159,loss,ns,-0.00000192,0.00000344,-0.557477999,0.577603198,neg,ns,-0.000125887,0.00100735,-0.124968406,0.900629562,neg,ns,0.045453802,-0.0000255,0.0000346,-0.737325247,0.461482278,neg,ns,0.955084015,Slc9a8,Slc9a8_Exon,2,167471455,167471504,167471455,167471456,50,+,CGGCACCACCACCATCGTCATCGTGCTCTTCACCATCCTGCTGCTGGGCG,"Exon (Slc9a8-201/Slc9a8, exon 14 of 17)",2,167421712,167477000,55289,1,Slc9a8-201,49743,Slc9a8-201;Slc9a8-203;Slc9a8-202;Slc9a8-206;Slc9a8-209;Slc9a8-208;Slc9a8-211;Slc9a8-205;Slc9a8-213;Slc9a8-210,Slc9a8;Slc9a8;Slc9a8;Slc9a8;Slc9a8;Slc9a8;Slc9a8;Slc9a8;Slc9a8;Slc9a8,0;0;0;0;49717;0;47336;20489;20400;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,77031,ENSMUSG00000039463,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27100,cg12790413,0.00000228,0.00000547,0.416826741,0.677093622,gain,ns,-0.00000518,0.0000093,-0.557319956,0.577711021,neg,ns,0.01220839,0.002724926,4.480264596,0.0000105,pos,ns,4.978868173,-0.000138899,0.0000937,-1.482217944,0.13929812,neg,ns,0.891414413,Rprd1b,Rprd1b_Intron,2,158060022,158060071,158060070,158060071,50,-,CTGATCTGTCAGACATTGATTATCATGAGCAGCTGTTGTTGGGTAGAACG,"Intron (Rprd1b-202/Rprd1b, intron 6 of 6)",2,158028497,158078207,49711,1,Rprd1b-202,31525,Rprd1b-202;Rprd1b-208;Rprd1b-203;Rprd1b-201;Rprd1b-207;Rprd1b-205;Rprd1b-206,Rprd1b;Rprd1b;Rprd1b;Rprd1b;Rprd1b;Rprd1b;Rprd1b,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,70470,ENSMUSG00000027651,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25277,cg07309812,0.0000815,0.0000153,5.33004749,0.000000189,gain,yes,0.0000145,0.000026,0.557308476,0.577718854,pos,ns,0.021558087,0.007611979,2.832126545,0.004926579,pos,ns,2.307454532,-0.000412329,0.000261775,-1.575127283,0.116247019,neg,ns,0.239963282,Gm43559,Gm43559_Intergenic_upstream,3,134302797,134302846,134302797,134302798,50,-,CGGCACTAATAGTCCAAGGCAGATATTGAAAAGCAGCACAGGGCCAGGCA,Distal Intergenic,3,134272045,134272510,466,2,Gm43559-201,-30336,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,7,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25515,cg12387371,7.48E-08,0.00000513,0.014569325,0.988385144,gain,ns,-0.00000486,0.00000872,-0.557295975,0.577727383,neg,ns,-0.002696823,0.002553614,-1.056080912,0.29175357,neg,ns,0.534983821,0.0000231,0.0000878,0.263062136,0.79267744,pos,ns,0.939624505,Fam199x,Fam199x_Exon,X,137073925,137073974,137073925,137073926,50,-,CGGCCTGCAAGAGAGGCCTGGAAGAGAAGCAACTTTAGTTGTGCAAGCAC,"Exon (Fam199x-201/Fam199x, exon 5 of 6)",20,137049594,137082503,32910,1,Fam199x-201,24331,Fam199x-201,Fam199x,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,245622,ENSMUSG00000042595,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
166,cg14553781,-0.00000598,0.00000593,-1.009073912,0.31372615,loss,ns,-0.00000561,0.0000101,-0.557071819,0.577880331,neg,ns,0.005235673,0.002950806,1.774319703,0.076991714,pos,ns,1.113556011,-0.000317684,0.000101478,-3.130573776,0.001910858,neg,ns,0.905652959,Gria4,Gria4_Exon,9,4455977,4456026,4456025,4456026,50,+,TGTTATATTGTTATACTATTCCACCCACCTTAATGAGGAACCCTTGGGCG,"Exon (Gria4-202/Gria4, exon 14 of 17)",9,4417896,4796142,378247,2,Gria4-202,340116,Gria4-202;Gria4-204;Gria4-201,Gria4;Gria4;Gria4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,16,18,14802,ENSMUSG00000025892,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13651,cg18016365,0.0000375,0.00000414,9.074410244,1.36E-17,gain,yes,-0.00000391,0.00000703,-0.557044933,0.577898677,neg,ns,0.003401843,0.00205841,1.652656052,0.09941327,pos,ns,1.002555641,-0.0000914,0.0000708,-1.291565913,0.197469662,neg,ns,0.062338393,Gabrb1,Gabrb1_fiveUTR,5,71699934,71699983,71699982,71699983,50,+,TCGGGAATTACTGCCCAGCAGCCGACTAAGTTGCATTCCTTGAATCTTCG,5' UTR,5,71658113,72108779,450667,1,Gabrb1-202,41821,Gabrb1-202;Gabrb1-201,Gabrb1;Gabrb1,0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,4,14400,ENSMUSG00000029212,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
12429,cg07578351,0.00000906,0.00000268,3.382242869,0.000811169,gain,ns,0.00000253,0.00000455,0.556968516,0.577950824,pos,ns,0.000723763,0.001332598,0.543121516,0.587436439,pos,ns,0.231039118,-0.00000367,0.0000458,-0.080091799,0.936215924,neg,ns,0.932667114,Msra,Msra_Exon,14,64233788,64233837,64233836,64233837,50,-,ATTAGTAAGATAATTAAATACTGGCTCACTCATCACTCTACCTTGGGTCG,"Exon (Msra-201/Msra, exon 9 of 11)",14,64122625,64455903,333279,2,Msra-201,222066,Msra-201;Msra-205;Msra-204,Msra;Msra;Msra,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,4,110265,ENSMUSG00000054733,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6791,cg23369348,-0.0000262,0.00000573,-4.566050815,0.00000718,loss,ns,0.00000543,0.00000974,0.556940561,0.577969901,pos,ns,-0.001430253,0.002853821,-0.501171216,0.616606313,neg,ns,0.209992033,0.0000303,0.0000981,0.308402726,0.757983043,pos,ns,0.951371273,Gm12129,Gm12129_Intergenic_downstream,11,38535308,38535357,38535356,38535357,50,+,CAACTTCTCTTTTCTAAAGAAAGCATGAAATGTCAAAATGACAGGTGCCG,Distal Intergenic,11,38219069,38220215,1147,1,Gm12129-201,316239,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,11,276941,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23423,cg14427818,0.00000284,0.0000132,0.215144991,0.829795748,gain,ns,-0.0000125,0.0000224,-0.556815569,0.5780552,neg,ns,-0.005962913,0.006573548,-0.907107289,0.36505463,neg,ns,0.437642139,0.000214277,0.000226064,0.947858834,0.343939615,pos,ns,0.586847639,Dpyd,Dpyd_Intergenic_upstream,3,118364329,118364378,118364377,118364378,50,-,AGTAAATCCAATAATATTTCTGACAGAATTGATTACAATAATGTCAAACG,Distal Intergenic,3,118562129,119432924,870796,1,Dpyd-201,-197800,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,29,99586,ENSMUSG00000033308,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21896,cg15308481,-0.00000791,0.00000323,-2.451925231,0.014760735,loss,ns,-0.00000305,0.00000548,-0.556809883,0.578059081,neg,ns,-0.003837372,0.001606365,-2.388854794,0.017498842,neg,ns,1.756990691,-0.00000219,0.0000552,-0.039732932,0.968331623,neg,ns,0.047924394,Cdkn2c,Cdkn2c_fiveUTR,4,109666657,109666706,109666657,109666658,50,-,CGACCTCATCAGCTTTTTTTGAAAAGAAAAAAATTGAGCGCTTTTTGAGT,Promoter (<=1kb),4,109660876,109667189,6314,2,Cdkn2c-202,483,Cdkn2c-201;Cdkn2c-202,Cdkn2c;Cdkn2c,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,8,13,12580,ENSMUSG00000028551,conserved gene and region,4,109666592,109666961,370,*,370,38,0.645945946,0.99378004,0.102702703,1.21E-29,CpGisland,TRUE,U1,Pr-A
11042,cg17905888,0.00000397,0.0000104,0.379912629,0.704270418,gain,ns,0.00000988,0.0000177,0.556783876,0.578076829,pos,ns,0.013094512,0.005198424,2.518938795,0.012273782,pos,ns,1.911021579,-0.0000847,0.000178773,-0.473773888,0.635994646,neg,ns,0.322475242,Gm13518,Gm13518_Intergenic_downstream,2,56454736,56454785,56454784,56454785,50,+,AATGCTTGAGCTGTTCTGCGTGGCCATGACAAGATTTGCAATTCTCTACG,Distal Intergenic,2,56039853,56040085,233,1,Gm13518-201,414883,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,37,37,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14903,cg05793328,-0.00000665,0.0000021,-3.163444471,0.001713698,loss,ns,-0.00000199,0.00000357,-0.556697988,0.578135448,neg,ns,0.000265731,0.001046762,0.253859808,0.799772156,pos,ns,0.09703372,-0.0000547,0.000036,-1.520271672,0.129461978,neg,ns,0.953017437,Fam222b,Fam222b_fiveUTR,11,78153777,78153826,78153825,78153826,50,-,AACCCACTGACTATAAAAATCTTCCCCAACAGTGTGAAGGTTCCCCAGCG,5' UTR,11,78094660,78156700,62041,1,Fam222b-201,59117,Fam222b-201;Fam222b-202;Fam222b-203;Gm12571-201;Traf4-203,Fam222b;Fam222b;Fam222b;Gm12571;Traf4,0;0;0;-4339;11763,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,10,21,216971,ENSMUSG00000037750,conserved gene and region,11,78153825,78153900,76,*,76,9,0.631578947,1.266666667,0.118421053,8.12E-08,CpGisland,TRUE,U10,Tr-S
9742,cg09411788,-0.00000234,0.000000803,-2.916124483,0.003802613,loss,ns,0.000000759,0.00000136,0.556668223,0.578155763,pos,ns,-0.000457111,0.000399494,-1.144225411,0.253412894,neg,ns,0.596171292,0.00000276,0.0000137,0.20081,0.840978828,pos,ns,0.026516509,Bbx,Bbx_Promoter,16,50432512,50432561,50432560,50432561,50,+,TTTTACAGAGACACACAAAGATCATCACATTTTCTATTTTCTAATGTTCG,Promoter (<=1kb),16,50191844,50432390,240547,2,Bbx-208,-122,Bbx-208;Bbx-201;Bbx-203;Bbx-202;Bbx-204;Bbx-207;Bbx-209;Bbx-206,Bbx;Bbx;Bbx;Bbx;Bbx;Bbx;Bbx;Bbx,0;0;0;0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,10,70508,ENSMUSG00000022641,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7175,cg05961447,0.00000055,0.00000108,0.50714768,0.612411771,gain,ns,-0.00000103,0.00000184,-0.556583583,0.578213533,neg,ns,0.000363342,0.000539699,0.67323203,0.501301269,pos,ns,0.299901196,-0.0000322,0.0000186,-1.734131246,0.083888912,neg,ns,0.96324079,Lcor,Lcor_Exon,19,41559011,41559060,41559011,41559012,50,-,CGTTACAGACAGTACAACAGTGAGATACTGGAGGAAGCAATCTCAGTGGT,"Exon (Lcor-201/Lcor, exon 8 of 8)",19,41482637,41562261,79625,1,Lcor-201,76374,Lcor-201;Lcor-204;Lcor-206;Lcor-202;Lcor-205,Lcor;Lcor;Lcor;Lcor;Lcor,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,25,212391,ENSMUSG00000025019,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21957,cg25665715,-0.00000331,0.00000201,-1.646206529,0.100734635,loss,ns,0.0000019,0.00000342,0.556571333,0.578221895,pos,ns,-0.001382893,0.00100162,-1.380655511,0.168379526,neg,ns,0.773710718,-0.0000161,0.0000344,-0.467234262,0.640660525,neg,ns,0.959967049,Ntng1,Ntng1_threeUTR,3,109832594,109832643,109832594,109832595,50,+,CGATATAACTGCATCGATTGGAGTGGCCGAAGCATTCACAATCTTGCAAG,3' UTR,3,109780040,110143004,362965,2,Ntng1-211,310361,Ntng1-211;Ntng1-208;Ntng1-206;Ntng1-202;Ntng1-203;Ntng1-204;Ntng1-205;Ntng1-207;Ntng1-209;Ntng1-210;Ntng1-213;Ntng1-212,Ntng1;Ntng1;Ntng1;Ntng1;Ntng1;Ntng1;Ntng1;Ntng1;Ntng1;Ntng1;Ntng1;Ntng1,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,7,80883,ENSMUSG00000059857,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27254,cg17178220,-0.0000187,0.00000688,-2.722274532,0.006850305,loss,ns,0.0000065,0.0000117,0.556551699,0.578235296,pos,ns,-0.005479437,0.003422068,-1.601206414,0.110349718,neg,ns,0.957228773,-0.0000338,0.000117685,-0.287281446,0.774088764,neg,ns,0.748508096,Dnm3,Dnm3_Intron,1,162217480,162217529,162217528,162217529,50,+,TAAAACATCTGGTACCATTTTATGCACAGACCCATGTCTGAGAGCAGGCG,"Intron (Dnm3-203/Dnm3, intron 3 of 8)",1,161982453,162295636,313184,2,Dnm3-203,78107,Dnm3-203;Dnm3-202;Dnm3-201;Dnm3-205,Dnm3;Dnm3;Dnm3;Dnm3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,6,103967,ENSMUSG00000040265,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11264,cg27335281,-0.00000213,0.00000199,-1.069388025,0.285726822,loss,ns,-0.00000188,0.00000338,-0.556460378,0.57829763,neg,ns,0.000249758,0.000991244,0.251964268,0.801235645,pos,ns,0.096239738,-0.0000348,0.0000341,-1.020140951,0.308457076,neg,ns,0.949997512,Arhgef6,Arhgef6_Exon,X,57243452,57243501,57243500,57243501,50,+,TCCACGGTTTTATAATTTGAGGAGGCTCCAAGGGTCCTCGGGGCTGTCCG,"Exon (Arhgef6-201/Arhgef6, exon 16 of 22)",20,57231485,57338729,107245,2,Arhgef6-201,95228,Arhgef6-205;Arhgef6-201;Arhgef6-202;Arhgef6-207,Arhgef6;Arhgef6;Arhgef6;Arhgef6,-2563;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,5,73341,ENSMUSG00000031133,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18243,cg02508649,0.0000665,0.00000675,9.8580247,4.04E-20,gain,yes,-0.00000638,0.0000115,-0.556417516,0.578326888,neg,ns,0.006123827,0.003359074,1.823070126,0.069255784,pos,ns,1.159543948,-0.000110738,0.000115518,-0.958617973,0.338498268,neg,ns,0.26039129,Ap3b1,Ap3b1_Intergenic_downstream,13,94595739,94595788,94595787,94595788,50,-,CTCAATTAATTAACCCTTGGGCTAAGTAGGCAGGTACATGGCGGTGGCCG,Distal Intergenic,13,94542303,94547867,5565,1,Ap3b1-202,53485,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,33,55,11774,ENSMUSG00000021686,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
27650,cg02940260,-0.00000673,0.00000287,-2.341457237,0.019841778,loss,ns,-0.00000272,0.00000488,-0.556383334,0.578350221,neg,ns,-0.001614716,0.001430856,-1.128496206,0.259982994,neg,ns,0.585055059,-0.0000162,0.0000492,-0.329109173,0.742295405,neg,ns,0.93925986,Gm20721,Gm20721_threeUTR,2,174345495,174345544,174345495,174345496,50,+,CGGGAGGACAACCAGACCAACCGCCTGCAGGAGGCTCTGAACCTCTTCAA,3' UTR,2,174330319,174346712,16394,2,Gm20721-201,1168,Gm20721-201;Gnas-211;Gnas-215;Gnas-201;Gnas-209;Gnas-220;Gnas-223;Gnas-224;Gnas-203;Gnas-212;Gnas-221;Gnas-202;Gnas-218;Gnas-207;Gnas-226;Gnas-208;Gnas-206;Gnas-216;Gnas-228;Gnas-225;Gnas-213,Gm20721;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,9,10,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22276,cg05992809,-0.0000285,0.00000778,-3.660200134,0.000296149,loss,ns,-0.00000736,0.0000132,-0.556303454,0.578404752,neg,ns,-0.008458805,0.003873525,-2.183748499,0.029730067,neg,ns,1.526804106,0.000254643,0.00013321,1.911589791,0.056850664,pos,ns,0.897370123,Tead1,Tead1_Exon,7,112841941,112841990,112841941,112841942,50,-,CGCCATTAAGGTACGTCTGGCTTGCCCACTTGTAGGGGGCTTTTCATCTC,"Exon (Tead1-217/Tead1, exon 4 of 14)",7,112679318,112899459,220142,1,Tead1-203,162623,Tead1-203;Tead1-216;Tead1-217;Tead1-201;Tead1-204;Tead1-214;Tead1-206;Tead1-202;Tead1-211;Tead1-207;Tead1-210;Tead1-212;Tead1-208;Tead1-209;Tead1-215,Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,16,21676,ENSMUSG00000055320,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9493,cg11552482,0.00000411,0.00000167,2.466865675,0.014170555,gain,ns,0.00000157,0.00000283,0.55588682,0.578689205,pos,ns,0.000375867,0.000829328,0.453218901,0.650708188,pos,ns,0.186613728,0.0000127,0.0000285,0.446140671,0.655807091,pos,ns,0.95078489,Acvr2a,Acvr2a_Exon,2,48896981,48897030,48896981,48896982,50,-,CGGAGGTACATGGCTCCAGAGGTATTAGAGGGTGCTATAAACTTCCAAAG,"Exon (Acvr2a-201/Acvr2a, exon 9 of 11)",2,48814109,48903269,89161,1,Acvr2a-201,82872,Acvr2a-201;Acvr2a-202,Acvr2a;Acvr2a,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,10,11480,ENSMUSG00000052155,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20376,cg10961454,0.0000221,0.00000421,5.25740742,0.000000273,gain,yes,-0.00000398,0.00000715,-0.555874767,0.578697434,neg,ns,0.004440599,0.002095802,2.11880634,0.03490187,pos,ns,1.457151306,-0.000120191,0.0000721,-1.66760133,0.096404702,neg,ns,0.044280234,Hoxc5,Hoxc5_Exon,15,103014485,103014534,103014485,103014486,50,-,CGGCCCCGCCACAGATTTACCCGTGGATGACCAAACTGCACATGAGCCAC,"Exon (Hoxc5-201/Hoxc5, exon 1 of 2)",15,102967443,103015676,48234,1,Hoxc5-202,47042,Hoxc4-202;Hoxc5-202;Hoxc5-201;Hoxc6-202;Hoxc6-203;Hoxc6-201,Hoxc4;Hoxc5;Hoxc5;Hoxc6;Hoxc6;Hoxc6,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,72,134,15424,ENSMUSG00000022485,mapped to different genes,15,103014167,103014734,568,*,568,41,0.588028169,0.835773758,0.072183099,1.73E-25,CpGisland,TRUE,U13,Hc-P
16460,cg12416489,0.0000276,0.0000116,2.376003527,0.01810871,gain,ns,-0.000011,0.0000197,-0.555872402,0.578699049,neg,ns,0.00894601,0.005781779,1.54727617,0.122816903,pos,ns,0.910741858,-0.000558417,0.000198835,-2.808447336,0.00529396,neg,ns,0.244729693,Ric8b,Ric8b_Intergenic_downstream,10,85044298,85044347,85044298,85044299,50,+,CGATTGTTGGCATGATGTAGACAAATTGACGCAAATTAGTTTAGCATGGG,Distal Intergenic,10,85008716,85018337,9622,1,Ric8b-204,35582,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,14,237422,ENSMUSG00000035620,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6518,cg13263798,0.00000164,0.00000232,0.708904265,0.478916657,gain,ns,0.00000219,0.00000394,0.555664372,0.578841106,pos,ns,0.001975406,0.001153998,1.711792134,0.087935119,pos,ns,1.055837644,-0.0000901,0.0000397,-2.27013087,0.023885863,neg,ns,0.941905316,Strbp,Strbp_threeUTR,2,37580693,37580742,37580741,37580742,50,+,GCTTACAGTCACTATATCTCAGCCTATTTTATACAAGTGATATGGCTACG,3' UTR,2,37483228,37647219,163992,2,Strbp-207,66477,Strbp-207;Strbp-201;Strbp-208;Strbp-209;Strbp-202,Strbp;Strbp;Strbp;Strbp;Strbp,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,7,20744,ENSMUSG00000026915,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17204,cg06352855,0.000008,0.0000027,2.965760863,0.003253925,gain,ns,-0.00000255,0.00000458,-0.555661226,0.578843254,neg,ns,0.000461793,0.001342049,0.344095146,0.731008021,pos,ns,0.136077858,-0.0000205,0.0000462,-0.443393578,0.657790365,neg,ns,0.940816357,Clk2,Clk2_threeUTR,3,89176427,89176476,89176475,89176476,50,-,CAGCTCTTCGATCTGATTGAAAGCATGCTAGAGTATGAACCAGCTAAGCG,3' UTR,3,89164795,89176921,12127,1,Clk2-202,11632,Clk2-202;Clk2-201;Clk2-209;Clk2-207;Clk2-203;Clk2-204;Clk2-211;Clk2-205;Clk2-208;Scamp3-201;Scamp3-203;Scamp3-206;Scamp3-202;Scamp3-208;Scamp3-207;Scamp3-205;Scamp3-204,Clk2;Clk2;Clk2;Clk2;Clk2;Clk2;Clk2;Clk2;Clk2;Scamp3;Scamp3;Scamp3;Scamp3;Scamp3;Scamp3;Scamp3;Scamp3,0;0;0;0;0;0;0;2472;1392;0;0;-1020;0;-1055;-1061;-1145;-1282,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,10,12748,ENSMUSG00000068917,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20074,cg20059075,-0.00000314,0.0000024,-1.307683838,0.191949514,loss,ns,0.00000227,0.00000409,0.555646195,0.578853519,pos,ns,-0.000528397,0.001196822,-0.441500295,0.659158639,neg,ns,0.181010052,0.0000432,0.0000412,1.049752626,0.294649536,pos,ns,0.886108165,Stim1,Stim1_Exon,7,102428781,102428830,102428829,102428830,50,-,CTGGCTGATGGGGCGTAGGTTCAGTGACCGCTCTCTCTGCTCTACATCCG,"Exon (Stim1-207/Stim1, exon 4 of 5)",7,102267806,102437318,169513,1,Stim1-201,160975,Stim1-201;Stim1-202;Stim1-209;Stim1-206;Stim1-207;Stim1-205;Stim1-204,Stim1;Stim1;Stim1;Stim1;Stim1;Stim1;Stim1,0;0;0;2808;0;2229;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,6,20866,ENSMUSG00000030987,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21093,cg12642864,0.00000295,0.00000489,0.604028108,0.546266722,gain,ns,0.00000462,0.00000831,0.555599713,0.578885262,pos,ns,-0.007050681,0.002434112,-2.896613308,0.004040512,neg,ns,2.393563639,0.000166346,0.0000837,1.987194621,0.047780635,pos,ns,0.86273817,Acy1,Acy1_threeUTR,9,106436157,106436206,106436205,106436206,50,-,CCCTGGCATAGATGTAGCCCTCAGAATCCTTGAAGGCCTCAAAGGGGTCG,3' UTR,9,106432981,106438175,5195,2,Acy1-205,1969,Abhd14a-201;Abhd14a-202;Abhd14a-203;Abhd14a-204;Abhd14a-207;Abhd14a-208;Abhd14a-205;Acy1-205;Acy1-201;Acy1-203;Acy1-212;Acy1-208;Acy1-202;Acy1-209;Acy1-210;Acy1-211;Acy1-204;Acy1-207;Acy1-206;Rpl29-203;Rpl29-202;Rpl29-201;Rpl29-204;Rpl29-206;Rpl29-205,Abhd14a;Abhd14a;Abhd14a;Abhd14a;Abhd14a;Abhd14a;Abhd14a;Acy1;Acy1;Acy1;Acy1;Acy1;Acy1;Acy1;Acy1;Acy1;Acy1;Acy1;Acy1;Rpl29;Rpl29;Rpl29;Rpl29;Rpl29;Rpl29,11472;11357;11472;11237;8673;11414;11311;0;0;0;-994;0;0;0;0;0;0;0;1981;6703;6619;6618;6602;6595;5088,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,1,109652,ENSMUSG00000023262,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16427,cg04394787,-0.0000146,0.0000065,-2.247914502,0.025284269,loss,ns,0.00000613,0.000011,0.555596637,0.578887363,pos,ns,0.004838017,0.003233565,1.496186744,0.13562236,pos,ns,0.867668703,-0.000271613,0.000111202,-2.442518158,0.015143408,neg,ns,0.829635866,Ric8b,Ric8b_Exon,10,84980117,84980166,84980117,84980118,50,+,CGCCTCATGACACATGTTGACCTTGGAGTCAAGCAAATTGCTGCTGAATT,"Exon (Ric8b-201/Ric8b, exon 7 of 10)",10,84917616,85016447,98832,1,Ric8b-201,62501,Ric8b-201;Ric8b-203;Ric8b-202;Ric8b-205,Ric8b;Ric8b;Ric8b;Ric8b,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,11,14,237422,ENSMUSG00000035620,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22459,cg10517211,0.0000813,0.0000118,6.916295428,2.66E-11,gain,yes,0.0000111,0.00002,0.555424393,0.579005,pos,ns,0.019021232,0.005852749,3.249965384,0.001281052,pos,ns,2.892433307,-0.000366392,0.000201276,-1.820349812,0.069669876,neg,ns,0.410063106,Gm12830,Gm12830_Intergenic_upstream,4,114688797,114688846,114688845,114688846,50,+,CAGTTCCCTAGGAATTTTATGAATGCTCAGCACAAGCCAAAATAAACTCG,Distal Intergenic,4,114821722,114856166,34445,1,Gm12830-201,-132876,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,12,26,433746,ENSMUSG00000055198,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24363,cg21750779,0.0000376,0.0000124,3.042208554,0.002549247,gain,ns,-0.0000117,0.000021,-0.555270576,0.579110061,neg,ns,0.03441987,0.006148474,5.598115701,4.77E-08,pos,ns,7.321097951,-0.000579381,0.000211446,-2.740094524,0.006498121,neg,ns,0.125136192,Ptms,Ptms_Promoter,6,124919702,124919751,124919750,124919751,50,+,TGCTGTCTCGGACACCCTGCTGGGCTCTTACCCTGTTGCCCTGGTAACCG,Promoter (<=1kb),6,124913764,124920103,6340,2,Ptms-205,352,Ptms-201;Ptms-205;Ptms-203;Ptms-202,Ptms;Ptms;Ptms;Ptms,-1756;0;-4478;-4173,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,2,2,69202,ENSMUSG00000030122,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24987,cg04181812,-0.000000449,0.000000572,-0.784922561,0.433098403,loss,ns,0.00000054,0.000000972,0.555184421,0.57916891,pos,ns,0.000334616,0.000284898,1.174511666,0.24109157,pos,ns,0.617817976,-0.0000106,0.0000098,-1.080014764,0.280975141,neg,ns,0.978640673,Atrn,Atrn_Exon,2,130982024,130982073,130982072,130982073,50,-,ATGCCTACGTGGCCTCCTTCCCTTTTGGCCAGTGTATGGAATGGTATACG,"Exon (Atrn-201/Atrn, exon 17 of 29)",2,130906495,131030333,123839,1,Atrn-201,75529,Atrn-201;Atrn-203;Atrn-202,Atrn;Atrn;Atrn,0;0;-712,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,11990,ENSMUSG00000027312,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3591,cg17790227,-0.0000176,0.00000562,-3.13995948,0.001852527,loss,ns,0.0000053,0.00000954,0.555169957,0.57917879,pos,ns,-0.003077242,0.002794727,-1.101088759,0.27171224,neg,ns,0.565890797,-0.0000639,0.0000961,-0.664495031,0.5068675,neg,ns,0.888743177,Klhl32,Klhl32_Intron,4,24631456,24631505,24631504,24631505,50,-,GCCTGTTGGCAGGTAGCAATGTGCTCTGTGGCAGATGGCAGGCATTATCG,"Intron (Klhl32-203/Klhl32, intron 5 of 7)",4,24612554,24800890,188337,2,Klhl32-203,169385,Klhl32-203;Klhl32-204;Klhl32-207;Klhl32-205;Klhl32-201,Klhl32;Klhl32;Klhl32;Klhl32;Klhl32,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,10,212390,ENSMUSG00000040387,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27487,cg00464569,-0.00000368,0.0000015,-2.455102075,0.014633451,loss,ns,-0.00000141,0.00000255,-0.555101805,0.579225345,neg,ns,0.000349878,0.000746678,0.468579851,0.639699302,pos,ns,0.194024123,-0.0000406,0.0000257,-1.579206076,0.115308597,neg,ns,0.967936326,Pbx1,Pbx1_Intron,1,168371089,168371138,168371137,168371138,50,-,CTAAAATATCATTAACATGTCTCTTGATCATTAGCATAACGTATGAGGCG,"Intron (Pbx1-208/Pbx1, intron 2 of 7)",1,168119364,168432270,312907,2,Pbx1-208,61132,Pbx1-208;Pbx1-205;Pbx1-206;Pbx1-201;Pbx1-202;Pbx1-204,Pbx1;Pbx1;Pbx1;Pbx1;Pbx1;Pbx1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,84,18514,ENSMUSG00000052534,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14001,cg19245146,0.0000191,0.0000136,1.402985272,0.161621984,gain,ns,0.0000129,0.0000232,0.555083004,0.579238189,pos,ns,-0.003618242,0.006790533,-0.532836199,0.594528718,neg,ns,0.225827163,0.00038434,0.000233526,1.645811419,0.100816039,pos,ns,0.669514151,Gm13668,Gm13668_Intron,2,74135851,74135900,74135851,74135852,50,+,CGCTTCAGTGAGTGTATCAATTTAAAGCTTCATCAGTGATTCTCACTCAT,"Intron (Gm13667-201/Gm13667-201, intron 1 of 2)",2,73959669,73960669,1001,2,Gm13668-201,-175182,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,20,667729,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18675,cg04071434,-0.00000951,0.00000618,-1.539823508,0.124623473,loss,ns,-0.00000582,0.0000105,-0.555021108,0.579280472,neg,ns,-0.002029207,0.003074628,-0.659984742,0.50975367,neg,ns,0.292639639,-0.000223891,0.000105736,-2.117453562,0.035017336,neg,ns,0.924769202,Tenm4,Tenm4_Exon,7,96702690,96702739,96702738,96702739,50,-,TGAGATGGACATTCTCGGCGCCTCCCGCCATGATGGGGCTTACAGTGACG,"Exon (Tenm4-201/Tenm4, exon 9 of 33)",7,96171246,96908569,737324,1,Tenm4-201,531444,Tenm4-201;Tenm4-203;Tenm4-202;Tenm4-207,Tenm4;Tenm4;Tenm4;Tenm4,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,17,26,23966,ENSMUSG00000048078,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19759,cg14958087,0.0000673,0.0000084,8.020030365,2.19E-14,gain,yes,-0.00000792,0.0000143,-0.554994269,0.579298807,neg,ns,0.002770804,0.004178848,0.663054508,0.507788364,pos,ns,0.294317256,0.000216654,0.00014371,1.507578529,0.132680817,pos,ns,0.603985809,Gpat3,Gpat3_Intergenic_downstream,5,101032968,101033017,101033016,101033017,50,+,TGCCCTGAAGATCAAGTCCGGGTCATTCCATCAATTCACTGCGGTTTACG,Distal Intergenic,5,100846417,100846850,434,1,Gpat3-205,186551,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,15,15,231510,ENSMUSG00000029314,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5293,cg01927175,-0.00000368,0.00000575,-0.640602034,0.522254516,loss,ns,0.00000542,0.00000976,0.554937127,0.579337845,pos,ns,0.005868517,0.002859527,2.052268278,0.040983055,pos,ns,1.387395667,-0.0003021,0.0000983,-3.072024249,0.002314686,neg,ns,0.86556075,Ranbp17,Ranbp17_Intron,11,33343514,33343563,33343562,33343563,50,+,GTGCCATTTGTAAAATCAGTTCACTTTCTTTTATTTATTACTGCAGTGCG,"Intron (Ranbp17-202/Ranbp17, intron 14 of 27)",11,33211795,33513746,301952,2,Ranbp17-202,170183,Ranbp17-202;Ranbp17-206;Ranbp17-203,Ranbp17;Ranbp17;Ranbp17,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,31,66011,ENSMUSG00000040594,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8932,cg24344222,0.00000144,0.00000182,0.790020045,0.430119951,gain,ns,0.00000171,0.00000309,0.554906671,0.579358652,pos,ns,0.000956214,0.000904136,1.057600246,0.29106116,pos,ns,0.536015744,-0.0000906,0.0000311,-2.914987139,0.003816122,neg,ns,0.954405178,Gm13469,Gm13469_Intergenic_downstream,2,46327273,46327322,46327321,46327322,50,-,TTTGGTCTATGTCACCTCAGATTAAATTATTACTGTTTGCAGCCTTTTCG,Distal Intergenic,2,46406220,46406569,350,2,Gm13469-201,79296,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,27,383690,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5627,cg04310096,0.0000166,0.00000539,3.08183798,0.002241937,gain,ns,-0.00000508,0.00000916,-0.554564428,0.579592492,neg,ns,-0.004092085,0.002684949,-1.524083039,0.128507448,neg,ns,0.8910717,0.000214666,0.0000923,2.324855651,0.02072521,pos,ns,0.907113856,Kirrel3,Kirrel3_Intergenic_upstream,9,34411915,34411964,34411915,34411916,50,-,CGGTTAGCAGGTGACAGGCTCCCATAACATGGCATCCATATGGCGTCACC,Distal Intergenic,9,34485894,34489158,3265,1,Kirrel3-204,-73979,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,21,67703,ENSMUSG00000032036,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12405,cg06564900,0.0000492,0.0000056,8.784124824,1.09E-16,gain,yes,-0.00000528,0.00000952,-0.554536305,0.57961171,neg,ns,0.009426654,0.002789002,3.379938343,0.000817755,pos,ns,3.087376658,-0.000263241,0.0000959,-2.744560742,0.006412457,neg,ns,0.05459152,Fign,Fign_fiveUTR,2,64098014,64098063,64098062,64098063,50,-,GCTGCTTGGAAGGAGCCAGCATGCCAGAGGCTGGGCGCAGGCGCAGAGCG,Promoter (<=1kb),2,63977337,64098038,120702,2,Fign-201,0,Fign-203;Fign-201;Fign-202;Fign-204,Fign;Fign;Fign;Fign,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,84,60344,ENSMUSG00000075324,conserved gene but different region,2,64098049,64098069,21,*,21,5,0.857142857,1.296296296,0.238095238,0.0000059,CpGisland,TRUE,U1,Pr-A
18831,cg00611309,-0.0000294,0.00000524,-5.614303372,4.39E-08,loss,yes,0.00000494,0.0000089,0.554436045,0.579680223,pos,ns,-0.001741508,0.002608789,-0.667554297,0.504914775,neg,ns,0.296781921,-0.0000329,0.0000897,-0.366886471,0.713954008,neg,ns,0.880566842,Gm9290,Gm9290_Intergenic_downstream,14,97588228,97588277,97588276,97588277,50,+,TTGTCAACATAGAGTTCTTTCAATTAAAATATTTCCTGGCTACCACAGCG,Distal Intergenic,14,97665672,97666291,620,2,Gm9290-201,78014,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,10,668659,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12770,cg11967831,0.00000303,0.00000561,0.540767275,0.58905634,gain,ns,0.00000528,0.00000952,0.554425425,0.57968748,pos,ns,0.008497786,0.002790413,3.045350697,0.002523536,pos,ns,2.597990563,-0.00017041,0.000096,-1.775800635,0.076746702,neg,ns,0.176223108,Phox2b,Phox2b_Promoter,5,67100396,67100445,67100396,67100397,50,+,CGTGTGGTGTAAACAAACCCTGGATATTTTATATGAATTAAATGTGTAGA,Promoter (1-2kb),5,67094399,67099301,4903,2,Phox2b-201,-1095,Phox2b-201;Phox2b-202,Phox2b;Phox2b,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,13,28,18935,ENSMUSG00000012520,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
18598,cg03545303,0.0000382,0.0000122,3.141761227,0.001841519,gain,ns,0.0000115,0.0000207,0.554278162,0.57978812,pos,ns,-0.002323986,0.006053923,-0.383880978,0.701329825,neg,ns,0.154077692,0.000145417,0.000208194,0.698467613,0.485408434,pos,ns,0.022193631,Hoxb5,Hoxb5_Exon,11,96303967,96304016,96303967,96303968,50,+,CGACCAGGCGACCTCAGCCAGCTCCAGCGCCAATTTCACCGAAATAGACG,Promoter (<=1kb),11,96303336,96306121,2786,1,Hoxb5-202,631,Hoxb5-202;Hoxb5-201;Hoxb6-202;Hoxb6-201,Hoxb5;Hoxb5;Hoxb6;Hoxb6,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,22,34,15413,ENSMUSG00000038700,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
13513,cg10707234,-0.00000073,0.00000251,-0.290762985,0.771427024,loss,ns,0.00000236,0.00000426,0.554244206,0.579811327,pos,ns,0.001502034,0.001249224,1.202372814,0.230136718,pos,ns,0.638014085,-0.0000341,0.000043,-0.793208271,0.428263166,neg,ns,0.093469906,Arid4a,Arid4a_fiveUTR,12,71015977,71016026,71015977,71015978,50,+,CGTGTAGAAGCGAGTCTGCTCAACAGCTTGTTATTTGGTGGATTGTGGCA,Promoter (<=1kb),12,71015990,71098592,82603,1,Arid4a-201,0,Arid4a-201;Arid4a-203;Arid4a-202,Arid4a;Arid4a;Arid4a,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,9,238247,ENSMUSG00000048118,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
13710,cg24557436,0.0000517,0.00000736,7.023097231,1.38E-11,gain,yes,-0.00000692,0.0000125,-0.554131624,0.579888273,neg,ns,0.00754048,0.003660799,2.059790826,0.040253124,pos,ns,1.395200407,-0.000168788,0.000125895,-1.340705814,0.180997602,neg,ns,0.074737561,Tle1,Tle1_Exon,4,72199291,72199340,72199339,72199340,50,-,ACGCACCTGTGATACTGCGCCTGCAGGAACTGGAATTCCTCTTTAATCCG,"Exon (Tle1-203/Tle1, exon 2 of 20)",4,72117142,72200919,83778,2,Tle1-203,1579,Tle1-203;Tle1-202;Tle1-204;Tle1-207;Tle1-201;Tle1-205;Tle1-209;Tle1-208,Tle1;Tle1;Tle1;Tle1;Tle1;Tle1;Tle1;Tle1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,20,21885,ENSMUSG00000008305,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
12764,cg15542784,0.0000121,0.0000102,1.189676884,0.235083771,gain,ns,0.00000957,0.0000173,0.554115571,0.579899245,pos,ns,-0.001504808,0.005058979,-0.297452944,0.766319959,neg,ns,0.115589863,0.000189885,0.000173978,1.091434354,0.275929349,pos,ns,0.17120655,Phox2b,Phox2b_fiveUTR,5,67099036,67099085,67099036,67099037,50,+,CGCCTGCCTCCAAACTGGCCTCCTTACTACCAGCAGAGCCTAGTTTTATG,Promoter (<=1kb),5,67097044,67099057,2014,2,Phox2b-202,0,Phox2b-201;Phox2b-202,Phox2b;Phox2b,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,28,18935,ENSMUSG00000012520,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
5637,cg03756336,0.00000222,0.00000487,0.457116062,0.64790779,gain,ns,0.00000458,0.00000827,0.554113919,0.579900374,pos,ns,0.002653677,0.002421483,1.095889028,0.273977975,pos,ns,0.562284349,-0.000121383,0.0000833,-1.45762689,0.145955678,neg,ns,0.913695611,Sox2,Sox2_Intron,3,34443794,34443843,34443842,34443843,50,-,CACTTATTATTATTCTGAGAATGTACTAATTTGTTACATCCAAGATGACG,"Intron (Sox2ot-204/Sox2ot-204, intron 2 of 3)",3,34650405,34652461,2057,1,Sox2-201,-206611,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,34,62,20674,ENSMUSG00000074637,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19336,cg16818481,0.000000466,0.00000273,0.171090161,0.864264491,gain,ns,0.00000257,0.00000463,0.554079574,0.579923849,pos,ns,0.002890394,0.001357058,2.129896748,0.03396751,pos,ns,1.468936283,-0.000114328,0.0000467,-2.449758231,0.014848119,neg,ns,0.938088796,Atp2b1,Atp2b1_threeUTR,10,99022811,99022860,99022811,99022812,50,-,CGAGTGGTGAATGCATTTCGTAGTTCTTTATATGAAGGGTTAGAAAAACC,3' UTR,10,98915152,99026143,110992,1,Atp2b1-201,107659,Atp2b1-201;Atp2b1-210;Atp2b1-205;Atp2b1-209;Atp2b1-203,Atp2b1;Atp2b1;Atp2b1;Atp2b1;Atp2b1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,7,67972,ENSMUSG00000019943,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22524,cg25775323,0.0000139,0.0000119,1.167399466,0.243946225,gain,ns,-0.0000112,0.0000202,-0.554038085,0.579952207,neg,ns,0.003485186,0.005926199,0.588098013,0.556894689,pos,ns,0.254226924,0.0000993,0.000203801,0.487375818,0.626336492,pos,ns,0.87988992,Gm13973,Gm13973_Intron,2,114918883,114918932,114918931,114918932,50,+,GCAAGTGCAGTGTGATGTCCATATGCTCTATTGTTCCCGTCAGCAGGGCG,"Intron (Gm13974-201/Gm13974-201, intron 5 of 8)",2,115036419,115037312,894,2,Gm13973-201,118380,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,13,,NA,mapped to different genes,2,114918811,114918938,128,*,128,9,0.53125,1.004359198,0.0703125,0.00000707,CpGisland,TRUE,U15,NS
24623,cg21242381,0.0000768,0.0000171,4.481777509,0.0000104,gain,ns,-0.0000161,0.0000291,-0.554035235,0.579954155,neg,ns,0.026351135,0.008524916,3.091072587,0.002175409,pos,ns,2.662459168,-0.000712304,0.000293171,-2.429652736,0.015680968,neg,ns,0.466880303,Sephs2,Sephs2_Exon,7,127272762,127272811,127272762,127272763,50,+,CGCCTGTTCTCTTGGCAGACAAATCAGTAATCCCCCAGAGGTTTCAGCTG,"Exon (Sephs2-201/Sephs2, exon 1 of 1)",7,127271879,127274055,2177,2,Sephs2-201,1244,Sephs2-201,Sephs2,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,20768,ENSMUSG00000049091,conserved gene and region,7,127272628,127272763,136,*,136,11,0.529411765,1.157894737,0.080882353,0.000000102,CpGisland,TRUE,NA,NRS
11918,cg05308831,0.0000333,0.00000786,4.242710094,0.0000292,gain,ns,-0.0000074,0.0000134,-0.55402969,0.579957945,neg,ns,-0.002747107,0.003912211,-0.702187674,0.483089017,neg,ns,0.315972836,-0.0000181,0.000134541,-0.134393697,0.893178477,neg,ns,0.768009724,Tank,Tank_Intergenic_downstream,2,61663408,61663457,61663456,61663457,50,-,CAAATTATTTAATAAATGAAGTGTCTAACAACTTTAACACTTCCTGGTCG,Distal Intergenic,2,61643831,61649977,6147,1,Tank-211,19626,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,17,21353,ENSMUSG00000064289,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14698,cg25511621,-0.000017,0.00000908,-1.874197069,0.061843642,loss,ns,-0.00000855,0.0000154,-0.553967749,0.580000285,neg,ns,-0.006784082,0.004521121,-1.500531044,0.134494676,neg,ns,0.871294905,0.0000144,0.000155481,0.092550494,0.926320456,pos,ns,0.809968958,Mlip,Mlip_fiveUTR,9,77347913,77347962,77347913,77347914,50,+,CGATAATTTCTGGTTAGCTAGTGTTTCCATTTATAGATGTTCAAACCCTA,Promoter (<=1kb),9,77102089,77347916,245828,2,Mlip-214,0,Mlip-215;Mlip-201;Mlip-212;Mlip-211;Mlip-214;Mlip-206;Mlip-208;Mlip-202,Mlip;Mlip;Mlip;Mlip;Mlip;Mlip;Mlip;Mlip,-50;-43;-120;-112;0;-52;-62;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,1,69642,ENSMUSG00000032355,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18599,cg26464343,0.0000312,0.00000933,3.338927448,0.000943618,gain,ns,0.00000878,0.0000159,0.553834027,0.580091693,pos,ns,-0.001867711,0.004645161,-0.402076553,0.687904766,neg,ns,0.162471682,0.000118384,0.000159747,0.741073106,0.4592101,pos,ns,0.02153405,Hoxb5,Hoxb5_Exon,11,96303975,96304024,96303975,96303976,50,+,CGACCTCAGCCAGCTCCAGCGCCAATTTCACCGAAATAGACGAGGCCAGC,Promoter (<=1kb),11,96303336,96306121,2786,1,Hoxb5-202,639,Hoxb5-202;Hoxb5-201;Hoxb6-202;Hoxb6-201,Hoxb5;Hoxb5;Hoxb6;Hoxb6,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,22,34,15413,ENSMUSG00000038700,conserved gene and region,11,96303706,96304121,416,*,416,40,0.675480769,0.879120879,0.096153846,5.87E-30,CpGisland,TRUE,U3,Pr-B
8730,cg08154917,-0.0000645,0.0000128,-5.048828361,0.00000076,loss,yes,0.000012,0.0000217,0.553760118,0.580142219,pos,ns,-0.014762278,0.006358722,-2.321579243,0.020903575,neg,ns,1.679779441,0.000237199,0.000218676,1.08470656,0.278894485,pos,ns,0.81029861,Fbxw4,Fbxw4_fiveUTR,19,45630889,45630938,45630937,45630938,50,-,GACCAGACTCGGTCTTCAGTCTGGATGGTGTGTAAGCACTGCCCCAGCCG,Promoter (<=1kb),19,45578254,45631138,52885,2,Fbxw4-206,200,Fbxw4-206;Fbxw4-201;Fbxw4-208;Fbxw4-202,Fbxw4;Fbxw4;Fbxw4;Fbxw4,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,14,30838,ENSMUSG00000040913,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10140,cg06893303,0.000111455,0.0000127,8.778247081,1.14E-16,gain,yes,-0.0000119,0.0000216,-0.553714098,0.580173679,neg,ns,0.021052269,0.006319278,3.331435694,0.000968474,pos,ns,3.013912225,-0.000640735,0.000217319,-2.94835725,0.003437468,neg,ns,0.294540228,Gm28308,Gm28308_Exon,6,52202640,52202689,52202688,52202689,50,+,TTTTCCACTTCATTCTCCGGTTTTGGAACCAGATTTTAATTTGTCTCTCG,"Exon (Hoxa5-201/Hoxa5, exon 2 of 2)",6,52163359,52213339,49981,2,Gm28308-201,10650,Gm28308-201;Hoxa3-201;Hoxa3-203;Hoxa5-201;Hoxa6-201,Gm28308;Hoxa3;Hoxa3;Hoxa5;Hoxa6,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,30,103,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
21159,cg22122783,-0.0000332,0.00000544,-6.105116618,3.07E-09,loss,yes,-0.00000512,0.00000925,-0.553655901,0.580213466,neg,ns,-0.003378234,0.002708838,-1.247115665,0.213296465,neg,ns,0.671016342,-0.000148514,0.0000932,-1.59423457,0.111902512,neg,ns,0.814385195,Mpped2,Mpped2_Exon,2,106575193,106575242,106575241,106575242,50,+,CCATCAGCCATGACCTTCACCATTTAGAAACACATGGTCTCTCATAAACG,"Exon (Gm14014-201/Gm14014-201, exon 2 of 2)",2,106693269,106868356,175088,1,Mpped2-202,-118027,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,16,33,77015,ENSMUSG00000016386,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25680,cg07657515,0.00000149,0.00000133,1.119742238,0.263690422,gain,ns,-0.00000125,0.00000227,-0.553610664,0.580244393,neg,ns,-0.001095782,0.000663767,-1.650851519,0.099781571,neg,ns,1.000949662,0.0000354,0.0000228,1.552585975,0.121542362,pos,ns,0.980092754,Lmo3,Lmo3_Intergenic_downstream,6,138323413,138323462,138323461,138323462,50,+,CTCCGACTTCTGAACATTTTTCCCCAATTATTTTTGTAAAGTATTGATCG,Distal Intergenic,6,138364196,138421452,57257,2,Lmo3-207,97990,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,38,109593,ENSMUSG00000030226,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25926,cg27521327,0.00000911,0.00000429,2.125865248,0.034304645,gain,ns,-0.00000403,0.00000728,-0.553603846,0.580249055,neg,ns,-0.004119914,0.002133195,-1.931335268,0.054353021,neg,ns,1.264776312,-0.000121956,0.0000734,-1.662426858,0.097437958,neg,ns,0.817762501,Szrd1,Szrd1_Exon,4,141118653,141118702,141118701,141118702,50,-,GAGTTGGGGCTGCTGACCACACCGTTGCTGGTGGGCCTCTTGAGGATGCG,"Exon (Szrd1-205/Szrd1, exon 3 of 4)",4,141113001,141139727,26727,2,Szrd1-205,21025,Szrd1-205;Szrd1-203;Szrd1-201;Szrd1-202;Szrd1-204,Szrd1;Szrd1;Szrd1;Szrd1;Szrd1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,213491,ENSMUSG00000040842,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27021,cg21315747,-0.00000503,0.00000155,-3.241002593,0.001320638,loss,ns,0.00000146,0.00000264,0.55359661,0.580254002,pos,ns,-0.000507534,0.000772003,-0.657424116,0.511396073,neg,ns,0.291242611,0.0000294,0.0000265,1.106817946,0.269230767,pos,ns,0.959806231,Phf20,Phf20_Exon,2,156267135,156267184,156267135,156267136,50,-,CGCTATTTTGCTCATTTTAGAATATTGTGGGTAATGCTAGGCCTAAAGAA,"Exon (Phf20-201/Phf20, exon 6 of 18)",2,156196642,156309952,113311,1,Phf20-201,70493,Phf20-201;Phf20-210;Phf20-203,Phf20;Phf20;Phf20,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,3,228829,ENSMUSG00000038116,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
650,cg17475635,-0.00000825,0.00000461,-1.79185569,0.074131264,loss,ns,0.00000433,0.00000782,0.553582922,0.580263361,pos,ns,-0.000600521,0.002292205,-0.261983908,0.793507842,neg,ns,0.100448777,-0.000125144,0.0000788,-1.587542235,0.113409295,neg,ns,0.913553844,Rbfox1,Rbfox1_Intergenic_downstream,16,7520747,7520796,7520747,7520748,50,-,CGTAACTCACCCAGCATGTAAAACAAATAACTAGGCTGACATGTCTGAAG,Distal Intergenic,16,7352970,7409969,57000,1,Rbfox1-206,167826,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,35,268859,ENSMUSG00000008658,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U14,Hc-H
20235,cg20215112,0.000108347,0.00000909,11.91397397,3.37E-27,gain,yes,-0.00000855,0.0000154,-0.553496718,0.580322299,neg,ns,0.018933973,0.004526232,4.183164965,0.0000375,pos,ns,4.426334894,-0.000485097,0.000155657,-3.116452725,0.002001818,neg,ns,0.370770238,C1ql1,C1ql1_Intron,11,102963189,102963238,102963237,102963238,50,-,AATATCTTACTTTGCAAATATAGTTTATTCCTTCAATAAAGCCGCCAGCG,"Intron (2410004I01Rik-201/2410004I01Rik-201, intron 1 of 2)",11,102939264,102946688,7425,2,C1ql1-201,-16550,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,4,23829,ENSMUSG00000045532,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
24673,cg23419136,-0.00000485,0.00000316,-1.537418504,0.125210884,loss,ns,-0.00000297,0.00000536,-0.553305237,0.580453227,neg,ns,-0.002216396,0.001570401,-1.411356404,0.159142391,neg,ns,0.79821412,-0.0000695,0.000054,-1.286320213,0.19929118,neg,ns,0.910495229,Lrp1,Lrp1_Exon,10,127553528,127553577,127553528,127553529,50,-,CGGCCGATCAGTGAATGGTCACCCCAGTCTGTCCAGTACAGGTACCTGGC,"Exon (Lrp1-201/Lrp1, exon 60 of 89)",10,127538161,127621148,82988,2,Lrp1-201,67571,Lrp1-201;Lrp1-205,Lrp1;Lrp1,0;-3611,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,8,16971,ENSMUSG00000040249,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7199,cg16991597,-0.0000427,0.00000947,-4.508563097,0.00000927,loss,ns,0.0000089,0.0000161,0.553228816,0.580505485,pos,ns,-0.01080597,0.004711527,-2.293517814,0.022487076,neg,ns,1.648067015,0.000120857,0.000162029,0.745896247,0.45629531,pos,ns,0.753905629,Jade1,Jade1_Exon,3,41604809,41604858,41604809,41604810,50,-,CGGCTGCCTGAGGAAGTAGTGGATTTCCTGTACCAGTACTGGAAGTTGAA,"Exon (Jade1-201/Jade1, exon 9 of 11)",3,41555731,41616864,61134,1,Jade1-201,49078,Jade1-201;Jade1-202;Jade1-204;Jade1-203;Jade1-206;Jade1-213;Jade1-205;Jade1-208;Jade1-207,Jade1;Jade1;Jade1;Jade1;Jade1;Jade1;Jade1;Jade1;Jade1,0;0;0;0;0;13136;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,Exon,6,16,269424,ENSMUSG00000025764,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7887,cg11681851,0.00000239,0.00000135,1.778231967,0.076345838,gain,ns,-0.00000126,0.00000229,-0.55321664,0.580513811,neg,ns,-0.00071215,0.000669694,-1.063396827,0.288429673,neg,ns,0.539960063,0.0000142,0.000023,0.617412514,0.537415911,pos,ns,0.030919852,Ebf1,Ebf1_Exon,11,44618229,44618278,44618277,44618278,50,+,AGAGCCGCTGGGCAGCGGCATGAACGCGGTGCGGACGTGGATGCAGGGCG,Promoter (<=1kb),11,44617317,45004995,387679,1,Ebf1-203,912,Ebf1-203;Ebf1-202;Ebf1-201;Ebf1-207;Ebf1-204;Ebf1-205,Ebf1;Ebf1;Ebf1;Ebf1;Ebf1;Ebf1,0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,15,80,13591,ENSMUSG00000057098,conserved gene and region,11,44618206,44618626,421,*,421,48,0.684085511,0.990005879,0.114014252,1.08E-39,CpGisland,TRUE,U3,Pr-B
26178,cg13404723,0.00000695,0.00000571,1.217473655,0.224349988,gain,ns,-0.00000537,0.0000097,-0.553152851,0.580557433,neg,ns,0.002945945,0.002842748,1.036301716,0.300869086,pos,ns,0.521622434,-0.0000743,0.0000978,-0.760321678,0.447640201,neg,ns,0.924621746,Lmo4,Lmo4_Intergenic_upstream,3,144227762,144227811,144227762,144227763,50,+,CGCTGACATAAACACAGCTGCTTTTATACATTTGAGAACATTTGTGTTTA,Distal Intergenic,3,144188683,144205220,16538,2,Lmo4-207,-22542,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,54,16911,ENSMUSG00000028266,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22220,cg01347849,0.000021,0.000028,0.749666752,0.454023963,gain,ns,0.0000263,0.0000476,0.553000989,0.580661289,pos,ns,0.027210074,0.013936351,1.95245335,0.051784228,pos,ns,1.285802493,-0.000978642,0.00047927,-2.041942582,0.042003312,neg,ns,0.766997459,Gm26897,Gm26897_Intergenic_downstream,5,111958240,111958289,111958288,111958289,50,-,TCAGTTCTGGCAGATCCTGACAGGTGATAAATACAATCTTTTCCGCCCCG,Distal Intergenic,5,111733924,111734574,651,1,Gm26897-201,224365,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,11,23,,NA,mapped to different genes,5,111958283,111958414,132,*,132,12,0.636363636,0.9,0.090909091,5.67E-09,CpGisland,TRUE,U15,NS
25760,cg01275157,0.0000017,0.00000104,1.639109362,0.102204901,gain,ns,0.000000973,0.00000176,0.552938486,0.580704037,pos,ns,0.001042552,0.000515404,2.022787906,0.04395318,pos,ns,1.357009701,-0.0000345,0.0000177,-1.948761831,0.052225757,neg,ns,0.03917005,Uncx,Uncx_Promoter,5,139536477,139536526,139536477,139536478,50,-,CGATGCTGTTTAATTAACGTGCAAATTGAGTAGATTAAATGACTCTAAAT,Promoter (7-8kb),5,139543494,139548179,4686,1,Uncx-201,-7017,NA,NA,NA,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,22,88,22255,ENSMUSG00000029546,conserved gene and region,5,139536349,139536575,227,*,227,17,0.537444934,1.039601293,0.074889868,3.67E-11,CpGisland,TRUE,U13,Hc-P
25245,cg18463496,0.00000557,0.00000276,2.016276945,0.044633224,gain,ns,0.0000026,0.0000047,0.552789975,0.580805614,pos,ns,0.001382911,0.001375889,1.005103916,0.315630704,pos,ns,0.500820756,-0.0000529,0.0000473,-1.118928913,0.264036728,neg,ns,0.925011238,Hao1,Hao1_Intergenic_downstream,2,134215030,134215079,134215030,134215031,50,-,CGTAAATTGACGACCGGGACAAAAATTATAATTGACATCATCTGTGGGAA,Distal Intergenic,2,134530760,134554307,23548,2,Hao1-202,339277,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,4,15112,ENSMUSG00000027261,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25559,cg13136756,0.0000422,0.0000176,2.401568671,0.016913372,gain,ns,-0.0000165,0.0000299,-0.552763979,0.580823395,neg,ns,0.030672786,0.008753234,3.504165998,0.000525514,pos,ns,3.279415681,-0.000765065,0.000301023,-2.541550224,0.011523056,neg,ns,0.416611429,Ebf3,Ebf3_Intron,7,137229075,137229124,137229123,137229124,50,-,TCAATACTGTAAATAATCTGCCTTGCTTTTTGTGAGCTCAAAGGACGCCG,"Intron (Ebf3-204/Ebf3, intron 8 of 15)",7,137193673,137314445,120773,2,Ebf3-204,85321,Ebf3-204;Ebf3-201;Ebf3-202;Ebf3-203;Ebf3-208;Ebf3-205;Ebf3-207,Ebf3;Ebf3;Ebf3;Ebf3;Ebf3;Ebf3;Ebf3,0;0;0;0;0;0;-2273,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,62,84,13593,ENSMUSG00000010476,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23256,cg06711244,-0.0000139,0.00000515,-2.696965365,0.007380137,loss,ns,0.00000484,0.00000876,0.55273677,0.580842006,pos,ns,-0.00540634,0.00256497,-2.107759482,0.035854397,neg,ns,1.44545758,-0.000045,0.0000882,-0.50975687,0.610584512,neg,ns,0.884456175,Eri3,Eri3_Intron,4,117624673,117624722,117624673,117624674,50,+,CGCTCCTGAAGCCAATATTGCAGGACTGAAATTTAATTCCGAAATGATTC,"Intron (Eri3-201/Eri3, intron 7 of 8)",4,117550365,117674297,123933,1,Eri3-201,74308,Eri3-201;Eri3-206,Eri3;Eri3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,82,97,140546,ENSMUSG00000033423,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21522,cg19778765,0.0000572,0.0000104,5.499816296,7.96E-08,gain,yes,0.00000976,0.0000177,0.552717203,0.580855391,pos,ns,0.007837652,0.005172241,1.515329991,0.130707814,pos,ns,0.88369845,-0.000065,0.000177873,-0.365354305,0.7150961,neg,ns,0.757996068,Zfhx3,Zfhx3_Intron,8,108101683,108101732,108101683,108101684,50,+,CGAAAGCCTTCTAAACAAGGCTGTGAATTGGTTTTCATGCTCGCATTGAC,"Intron (Zfhx3-204/Zfhx3, intron 1 of 15)",8,107942644,108961630,1018987,1,Zfhx3-204,159039,Zfhx3-204;Zfhx3-207,Zfhx3;Zfhx3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,114,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7771,cg08816243,0.00000577,0.000009,0.641213533,0.521857725,gain,ns,-0.00000845,0.0000153,-0.552627772,0.580916565,neg,ns,0.004318588,0.004480605,0.963840352,0.335877222,pos,ns,0.473819448,-0.000352857,0.000154088,-2.289973114,0.022694375,neg,ns,0.600605269,Arhgap15,Arhgap15_Intron,2,44243044,44243093,44243092,44243093,50,-,TTAGTGTCTTGTAATTGTTTCATTAAAACCAGTTGTTCCATTTCTCCTCG,"Intron (Arhgap15-203/Arhgap15, intron 11 of 14)",2,43748824,44395953,647130,1,Arhgap15-203,494220,Arhgap15-203;Arhgap15-202;Arhgap15-201,Arhgap15;Arhgap15;Arhgap15,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,72,78,76117,ENSMUSG00000049744,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12280,cg22191805,-0.00000256,0.0000106,-0.242670598,0.808421063,loss,ns,0.00000991,0.0000179,0.552555126,0.58096626,pos,ns,-0.004487795,0.005256929,-0.853691294,0.393935227,neg,ns,0.404575182,0.000204996,0.000180785,1.133919508,0.257704422,pos,ns,0.820412724,Xkr6,Xkr6_Exon,14,63819374,63819423,63819374,63819375,50,-,CGAGCTAAGATCCTTGCCAGCTCCTGTTGTGCCGAGCTGCTCTGGGGCAT,"Exon (Xkr6-201/Xkr6, exon 3 of 3)",14,63606503,63820809,214307,1,Xkr6-201,212871,Xkr6-201;Xkr6-202,Xkr6;Xkr6,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,11,219149,ENSMUSG00000035067,conserved gene and region,14,63819136,63819407,272,*,272,17,0.507352941,0.974499473,0.0625,6.51E-10,CpGisland,TRUE,NA,NRS
14435,cg11326290,-0.0000123,0.00000414,-2.979886112,0.003111601,loss,ns,-0.00000389,0.00000704,-0.552505625,0.581000123,neg,ns,-0.000122728,0.002061815,-0.059524298,0.952572866,neg,ns,0.021101794,-0.000203854,0.0000709,-2.875001906,0.004319806,neg,ns,0.071317103,Ppp2r5e,Ppp2r5e_fiveUTR,12,75596178,75596227,75596226,75596227,50,+,CTCTCTCCTATTGTCAATATCACCGGGCGGCTGAGTCCATGGCACACGCG,Promoter (<=1kb),12,75450881,75596200,145320,2,Ppp2r5e-201,0,Ppp2r5e-201;Ppp2r5e-205;Ppp2r5e-202;Ppp2r5e-204,Ppp2r5e;Ppp2r5e;Ppp2r5e;Ppp2r5e,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,7,26932,ENSMUSG00000021051,conserved gene and region,12,75595511,75596775,1265,*,1265,150,0.716996047,0.923852184,0.118577075,1.17E-125,CpGisland,TRUE,U2,Pr-W
23578,cg14973446,0.0000693,0.000012,5.75399516,2.09E-08,gain,yes,-0.0000113,0.0000205,-0.55243991,0.58104508,neg,ns,0.006434046,0.00599536,1.073170938,0.284029098,pos,ns,0.546637165,-0.000111419,0.00020618,-0.540397187,0.589311177,neg,ns,0.787170191,Gli2,Gli2_Intron,1,119047486,119047535,119047486,119047487,50,+,CGCCATTAAATTTCAATCAATTCAACTTAGCACAAGTGTACTTGAGCGGC,"Intron (Gli2-201/Gli2, intron 1 of 13)",1,118834132,119053619,219488,2,Gli2-201,6084,Gli2-201;Gli2-203;Gli2-204;Gli2-205;Gli2-206;Gli2-208;Gli2-207;Gli2-209,Gli2;Gli2;Gli2;Gli2;Gli2;Gli2;Gli2;Gli2,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,4,14633,ENSMUSG00000048402,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
19423,cg01107215,-0.000000858,0.000000979,-0.875736618,0.381851276,loss,ns,0.000000919,0.00000166,0.55241425,0.581062635,pos,ns,0.000917073,0.000487368,1.881683138,0.060815842,pos,ns,1.215983276,-0.0000346,0.0000168,-2.063015994,0.039943588,neg,ns,0.97768749,Gm12689,Gm12689_Promoter,4,99294760,99294809,99294760,99294761,50,+,CGGAAAATCAATACCTTTTAAATGCTGTTTATGTGTGATTAACGGTTAAT,Promoter (1-2kb),4,99295900,99297258,1359,1,Gm12689-201,-1091,Gm12689-201,Gm12689,-1091,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,7,26,100137011,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27651,cg26452915,-0.0000186,0.00000593,-3.133890264,0.001890056,loss,ns,0.00000557,0.0000101,0.552137693,0.581251852,pos,ns,-0.001638401,0.00295369,-0.554696425,0.5795023,neg,ns,0.236944836,-0.0000374,0.000101577,-0.368249453,0.71293857,neg,ns,0.43873075,Gm20721,Gm20721_fiveUTR,2,174346531,174346580,174346579,174346580,50,+,CTTTTCCCTTCAGCTTGCTTAGATGTTCCAAATTTAGAAAGCTTAAGGCG,Promoter (<=1kb),2,174330319,174346712,16394,2,Gm20721-201,132,Gm20721-201;Gnas-211;Gnas-215;Gnas-201;Gnas-209;Gnas-220;Gnas-223;Gnas-224;Gnas-203;Gnas-212;Gnas-221;Gnas-202;Gnas-218;Gnas-207;Gnas-226;Gnas-208;Gnas-206;Gnas-216;Gnas-228;Gnas-225;Gnas-213,Gm20721;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,TRUE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,10,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10992,cg08401998,0.0000117,0.0000037,3.154223894,0.001767017,gain,ns,-0.00000347,0.00000629,-0.552108557,0.581271789,neg,ns,0.001530647,0.001842567,0.830714227,0.406774416,pos,ns,0.39064637,-0.00014138,0.0000634,-2.23117516,0.02638445,neg,ns,0.895310416,Macroh2a1,Macroh2a1_Intron,13,56088393,56088442,56088441,56088442,50,-,CACAGGCACATTTACTAATGCCCCAATGGCAGGGCTGGCCTACCTGGTCG,"Intron (Macroh2a1-201/Macroh2a1, intron 6 of 8)",13,56073619,56135631,62013,2,Macroh2a1-201,47189,Macroh2a1-201;Macroh2a1-202;Macroh2a1-203;Macroh2a1-206,Macroh2a1;Macroh2a1;Macroh2a1;Macroh2a1,0;0;-3872;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,9,26914,ENSMUSG00000015937,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14339,cg13652008.2,-0.0000114,0.00000674,-1.694766158,0.091124011,loss,ns,-0.00000632,0.0000115,-0.551935146,0.581390451,neg,ns,-0.00284156,0.003356767,-0.846516788,0.397917502,neg,ns,0.400206958,0.0000433,0.000115439,0.375355228,0.707652991,pos,ns,0.885187206,Ltbp1,Ltbp1_Intron,17,75178491,75178540,75178491,75178492,50,+,CGCATGCCTAAAACATTTCCAGGGGTCGGGCTGCAAATAGTGACTTAATA,"Intron (Ltbp1-210/Ltbp1, intron 4 of 34)",17,75005568,75391328,385761,1,Ltbp1-210,172923,Ltbp1-210;Ltbp1-201;Ltbp1-205;Ltbp1-203;Ltbp1-202,Ltbp1;Ltbp1;Ltbp1;Ltbp1;Ltbp1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,9,268977,ENSMUSG00000001870,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12773,cg15030317,0.000021,0.00000687,3.059839024,0.002408038,gain,ns,0.00000644,0.0000117,0.551793233,0.581487569,pos,ns,0.004370789,0.003417607,1.278903478,0.201887576,pos,ns,0.694890406,-0.0000376,0.000117531,-0.319807008,0.749330061,neg,ns,0.884322215,Rsrc1,Rsrc1_Intron,3,67136144,67136193,67136144,67136145,50,-,CGCCTCAATCTAATTAGGGGTTAAAAGAGGCCATGACTGTGATGTGACAG,"Intron (Rsrc1-206/Rsrc1, intron 4 of 9)",3,66981390,67356559,375170,1,Rsrc1-206,154754,Rsrc1-206;Rsrc1-203;Rsrc1-202;Rsrc1-201;Rsrc1-209;Rsrc1-205,Rsrc1;Rsrc1;Rsrc1;Rsrc1;Rsrc1;Rsrc1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,37,66880,ENSMUSG00000034544,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8818,cg03946394,-0.0000185,0.00000739,-2.498306022,0.012996487,loss,ns,0.00000693,0.0000126,0.551754694,0.581513944,pos,ns,0.005682309,0.003678392,1.544780739,0.123419507,pos,ns,0.908616192,-0.000439782,0.0001265,-3.476547992,0.000580443,neg,ns,0.774395928,Clint1,Clint1_Exon,11,45886473,45886522,45886473,45886474,50,-,CGTGTTGTTACAAGTGCCAGAGAACACATTTATGATTTACGATCCCTGGA,"Exon (Clint1-201/Clint1, exon 4 of 12)",11,45851964,45910625,58662,1,Clint1-201,34509,Clint1-201;Clint1-202;Clint1-203,Clint1;Clint1;Clint1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,7,216705,ENSMUSG00000006169,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7762,cg12394251,-0.00000419,0.0000017,-2.461215072,0.01439126,loss,ns,0.0000016,0.00000289,0.551614044,0.581610207,pos,ns,-0.000363075,0.000847287,-0.428514955,0.668573839,neg,ns,0.174850621,-0.0000308,0.0000291,-1.057521281,0.291097119,neg,ns,0.961325033,Cbl,Cbl_fiveUTR,9,44201068,44201117,44201116,44201117,50,+,TTTTCTCCAAGTGTCTCCATCTTCCCCTCATATCTTGACAAGATAGTACG,5' UTR,9,44142976,44234049,91074,2,Cbl-211,32932,Cbl-211;Cbl-206;Cbl-201;Cbl-204;Cbl-203,Cbl;Cbl;Cbl;Cbl;Cbl,0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,1,12402,ENSMUSG00000034342,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12914,cg13467605,-0.00000148,0.00000114,-1.302281468,0.193786896,loss,ns,0.00000106,0.00000193,0.551585036,0.581630062,pos,ns,0.000663792,0.000565533,1.173745275,0.241398038,pos,ns,0.617266263,-0.0000186,0.0000194,-0.958778005,0.338417755,neg,ns,0.028379465,Arid5b,Arid5b_Exon,10,68277993,68278042,68278041,68278042,50,+,GGATAAAAGTTGCCGGCTGGTCCTCTCTTCCCACAACAGCTGGAGCTCCG,Promoter (<=1kb),10,68092520,68278740,186221,2,Arid5b-204,698,Arid5b-204;Arid5b-201;Arid5b-202,Arid5b;Arid5b;Arid5b,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,33,71371,ENSMUSG00000019947,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
27304,cg15366711,0.0000788,0.0000181,4.349995312,0.0000185,gain,ns,-0.000017,0.0000308,-0.551549295,0.581654525,neg,ns,0.02496883,0.009018187,2.768719497,0.005966537,pos,ns,2.224277628,-0.000818911,0.000310135,-2.640499966,0.008697566,neg,ns,0.23706901,Hnf4a,Hnf4a_Intron,2,163555543,163555592,163555591,163555592,50,+,TGCTAATACTGAGCAAACATTTGGAAAACATCATTCCGTGACTGAGCTCG,"Intron (Hnf4a-203/Hnf4a, intron 3 of 4)",2,163546817,163559110,12294,1,Hnf4a-203,8726,Hnf4a-205;Hnf4a-203;Hnf4a-202;Hnf4a-201;Hnf4a-204,Hnf4a;Hnf4a;Hnf4a;Hnf4a;Hnf4a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,6,15378,ENSMUSG00000017950,conserved gene and region,2,163555495,163555728,234,*,234,13,0.572649573,0.677807487,0.055555556,0.000000408,CpGisland,TRUE,NA,NRS
9227,cg26590476,-0.000004,0.00000195,-2.055788066,0.040640131,loss,ns,-0.00000182,0.00000331,-0.551546983,0.581656107,neg,ns,0.000887633,0.000969156,0.915882937,0.360440202,pos,ns,0.443166776,-0.0000545,0.0000333,-1.634608287,0.103146213,neg,ns,0.954165032,Cadm1,Cadm1_Intron,9,47717342,47717391,47717342,47717343,50,-,CGTAGGAAATTGATTTTAGTGTCACAAAGGACATTTCTGACAGGGATGTA,"Intron (Cadm1-204/Cadm1, intron 1 of 9)",9,47530173,47853385,323213,1,Cadm1-204,187169,Cadm1-204;Cadm1-209;Cadm1-206;Cadm1-202;Cadm1-203;Cadm1-207;Cadm1-205;Cadm1-211;Cadm1-210;Cadm1-208;Cadm1-201,Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,77,54725,ENSMUSG00000032076,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20019,cg20406520,0.000000849,0.00000271,0.313074112,0.75443488,gain,ns,0.00000254,0.00000461,0.55139265,0.581761748,pos,ns,0.003039444,0.001350244,2.251032654,0.025083799,pos,ns,1.600606695,-0.0000849,0.0000464,-1.828325058,0.06846162,neg,ns,0.938610101,Zfp740,Zfp740_Exon,15,102208786,102208835,102208834,102208835,50,-,GTAAAGATTCCCAAAAATTTTGTTTGTGAACACTGCTTTGGAGCCTTTCG,"Exon (Zfp740-201/Zfp740, exon 6 of 8)",15,102203648,102215605,11958,1,Zfp740-201,5138,Csad-218;Csad-206;Csad-222;Csad-204;Csad-207;Csad-220;Csad-215;Csad-213;Zfp740-211;Zfp740-201;Zfp740-202;Zfp740-209;Zfp740-208;Zfp740-212;Zfp740-203;Zfp740-205;Zfp740-207;Zfp740-210;Zfp740-206;Zfp740-204,Csad;Csad;Csad;Csad;Csad;Csad;Csad;Csad;Zfp740;Zfp740;Zfp740;Zfp740;Zfp740;Zfp740;Zfp740;Zfp740;Zfp740;Zfp740;Zfp740;Zfp740,-4541;-4533;-4553;-4530;-4893;-4585;-4544;-4062;5537;0;0;0;0;0;0;4040;4006;2227;1168;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,Exon,4,5,68744,ENSMUSG00000046897,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9384,cg25864929,-0.00000402,0.00000162,-2.479677834,0.013681212,loss,ns,0.00000152,0.00000276,0.551375205,0.58177369,pos,ns,0.000497469,0.000807474,0.616080645,0.538293393,pos,ns,0.268980951,-0.000008,0.0000278,-0.288165791,0.773412402,neg,ns,0.957485787,Tmem260,Tmem260_threeUTR,14,48513203,48513252,48513251,48513252,50,+,TGAGTCATTCAGCAAGAAAAGGCCCCTTACCAGGAATAGTCACAGTTCCG,3' UTR,14,48446124,48520368,74245,1,Tmem260-210,67079,Tmem260-210;Tmem260-202;Tmem260-209;Tmem260-201;Tmem260-204;Tmem260-205,Tmem260;Tmem260;Tmem260;Tmem260;Tmem260;Tmem260,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,11,218989,ENSMUSG00000036339,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4628,cg26080798,-0.00000487,0.00000152,-3.199353435,0.001519912,loss,ns,-0.00000143,0.00000259,-0.551352048,0.581789541,neg,ns,-0.00022962,0.000758152,-0.30286753,0.762193949,neg,ns,0.117934503,-0.0000687,0.0000261,-2.636443762,0.00879988,neg,ns,0.031928212,E2f3,E2f3_fiveUTR,13,29985990,29986039,29986038,29986039,50,+,ATGGCTCCAGGAAGCTGCTGCTGACAATGAATGAAGGGATACGGTTTACG,Promoter (<=1kb),13,29906575,29986063,79489,2,E2f3-201,24,E2f3-203;E2f3-204;E2f3-201;E2f3-202,E2f3;E2f3;E2f3;E2f3,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,10,13557,ENSMUSG00000016477,conserved gene but different region,13,29986031,29986187,157,*,157,14,0.573248408,1.168527379,0.089171975,2.69E-10,CpGisland,TRUE,U2,Pr-W
17077,cg08592280,0.000059,0.00000931,6.33988821,8.11E-10,gain,yes,-0.00000872,0.0000158,-0.551333305,0.581802372,neg,ns,0.017321076,0.004634572,3.73736243,0.00022137,pos,ns,3.654881809,-0.000119271,0.000159383,-0.748330667,0.454828085,neg,ns,0.400234468,Gata2,Gata2_Exon,6,88204660,88204709,88204660,88204661,50,-,CGGGGACCCTGTCTGCAACGCCTGTGGCCTCTACTACAAGCTGCACAATG,"Exon (Gata2-202/Gata2, exon 5 of 6)",6,88193891,88207032,13142,1,Gata2-202,10769,Gata2-202;Gata2-203;Gata2-201;Gata2-205;Gata2-204,Gata2;Gata2;Gata2;Gata2;Gata2,0;6326;0;3741;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,12,14461,ENSMUSG00000015053,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
8785,cg09312038,-0.0000288,0.00000408,-7.064176088,1.07E-11,loss,yes,0.00000382,0.00000692,0.551303394,0.581822847,pos,ns,-0.006541042,0.002028302,-3.224885389,0.00139469,neg,ns,2.855522403,0.000180828,0.0000698,2.592402465,0.009982356,pos,ns,0.93402948,Oga,Oga_Exon,19,45752226,45752275,45752274,45752275,50,+,AATTCCAGAATTCTTTTATCATCTGGTCTCACTTCACAGAAAGCTCCCCG,"Exon (Gm15491-201/Gm15491-201, exon 2 of 2)",19,45750259,45783551,33293,2,Oga-201,31276,Npm3-201;Npm3-202;Oga-201;Oga-204;Oga-203;Oga-206,Npm3;Npm3;Oga;Oga;Oga;Oga,-2635;-2677;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,21,76055,ENSMUSG00000025220,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6521,cg01611544,-0.00000487,0.00000188,-2.593695998,0.009945692,loss,ns,-0.00000176,0.00000319,-0.551154811,0.581924566,neg,ns,-0.0000618,0.000934401,-0.066104038,0.947337606,neg,ns,0.023495222,0.00000934,0.0000321,0.290733761,0.771449356,pos,ns,0.93845621,Strbp,Strbp_threeUTR,2,37581660,37581709,37581660,37581661,50,-,CGACGCTCAGAGGCTGGCAATAGGGGCTGTCAATGAAAAAACCACCTACA,3' UTR,2,37483228,37647219,163992,2,Strbp-207,65510,Strbp-207;Strbp-201;Strbp-208;Strbp-209;Strbp-202,Strbp;Strbp;Strbp;Strbp;Strbp,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,7,20744,ENSMUSG00000026915,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7697,cg13124646,-0.0000342,0.00000628,-5.438534753,0.000000109,loss,yes,0.00000588,0.0000107,0.551144537,0.581931599,pos,ns,0.001763563,0.003127539,0.563881875,0.57324222,pos,ns,0.241661831,-0.000155293,0.000107556,-1.443833498,0.149795648,neg,ns,0.867673238,Adra1b,Adra1b_Exon,11,43776376,43776425,43776424,43776425,50,+,GGTTGAGGCAGCTGTTGAAGTAGCCCAGCCAGAACACCACCTTGAACACG,"Exon (Adra1b-202/Adra1b, exon 2 of 2)",11,43774606,43836332,61727,2,Adra1b-202,59907,Adra1b-202;Adra1b-204;Adra1b-201;Adra1b-203,Adra1b;Adra1b;Adra1b;Adra1b,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,5,11548,ENSMUSG00000050541,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23280,cg14940779,-0.0000016,0.00000463,-0.346651815,0.729088098,loss,ns,0.00000433,0.00000786,0.551045199,0.58199961,pos,ns,0.0000806,0.002303813,0.035006622,0.972096991,pos,ns,0.012290401,0.000109048,0.0000792,1.376380429,0.169697235,pos,ns,0.965503783,Eri3,Eri3_Intron,4,117647141,117647190,117647141,117647142,50,+,CGGCAGCACCTGCTAATGCAAGTGTTTAATATTTGATGGGCTGGGATAAA,"Intron (Eri3-201/Eri3, intron 7 of 8)",4,117550365,117674297,123933,1,Eri3-201,96776,Eri3-201;Eri3-206;Eri3-203,Eri3;Eri3;Eri3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,82,97,140546,ENSMUSG00000033423,conserved gene and region,4,117647026,117647142,117,*,117,11,0.632478633,0.940789474,0.094017094,2.09E-08,CpGisland,TRUE,NA,NRS
24648,cg10663766,-0.00000912,0.0000033,-2.767812292,0.005982762,loss,ns,-0.00000308,0.0000056,-0.550864869,0.58212308,neg,ns,-0.000923607,0.001640274,-0.563080995,0.573786752,neg,ns,0.241249483,0.000104249,0.0000564,1.848102177,0.0655399,pos,ns,0.954381502,Parp11,Parp11_Exon,6,127471549,127471598,127471549,127471550,50,-,CGGATACCAACAGTCAGTGTTCAGTTAGCAGTGAAGATATCGAAAAAAGC,"Exon (Parp11-204/Parp11, exon 4 of 7)",6,127446840,127494240,47401,1,Parp11-202,24709,Parp11-202;Parp11-204;Parp11-206;Parp11-209;Parp11-205;Parp11-203;Parp11-201;Parp11-210;Parp11-208,Parp11;Parp11;Parp11;Parp11;Parp11;Parp11;Parp11;Parp11;Parp11,0;0;0;0;17883;0;0;0;-2548,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,101187,ENSMUSG00000037997,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
703,cg11789731,-0.00000235,0.00000791,-0.296524184,0.767028363,loss,ns,-0.0000074,0.0000134,-0.550853868,0.582130612,neg,ns,0.023696548,0.003936801,6.019239102,4.94E-09,pos,ns,8.305846657,-0.001178995,0.000135386,-8.708379069,1.87E-16,neg,yes,0.837466127,Porcn,Porcn_threeUTR,X,8194189,8194238,8194189,8194190,50,+,CGGTAGAAGATCCAGCATCCAAAAGTGACCCAGTGACTGGCCCAGCTGAG,3' UTR,20,8193848,8206525,12678,2,Porcn-202,12287,Ebp-201;Ebp-203;Ebp-204;Porcn-202;Porcn-207;Porcn-201;Porcn-203;Porcn-204;Porcn-205,Ebp;Ebp;Ebp;Porcn;Porcn;Porcn;Porcn;Porcn;Porcn,-677;-789;-1291;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,4,53627,ENSMUSG00000031169,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26450,cg07978595,0.0000323,0.00000993,3.247718885,0.001290869,gain,ns,-0.00000929,0.0000169,-0.550424092,0.582424927,neg,ns,0.005575604,0.004943789,1.127799742,0.260276622,pos,ns,0.584564839,-0.0000827,0.000170016,-0.486500186,0.626956329,neg,ns,0.076348782,Foxa2,Foxa2_Exon,2,148044357,148044406,148044405,148044406,50,-,CATCTTGTTGGGGCTCTGCTGGATGGCCATGGTGATGAGCGAGATGTACG,"Exon (Foxa2-202/Foxa2, exon 2 of 2)",2,148042877,148045948,3072,2,Foxa2-202,1542,Foxa2-202;Foxa2-201;Foxa2-204;Foxa2-203,Foxa2;Foxa2;Foxa2;Foxa2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,25,15376,ENSMUSG00000037025,conserved gene and region,2,148044396,148044753,358,*,358,38,0.69273743,0.884813008,0.106145251,3.13E-30,CpGisland,TRUE,U3,Pr-B
6084,cg25843357,0.0000117,0.0000047,2.497019266,0.013042787,gain,ns,-0.0000044,0.00000799,-0.550355728,0.58247175,neg,ns,-0.00378076,0.002340018,-1.615697218,0.107177014,neg,ns,0.969898346,0.000112871,0.0000805,1.402593516,0.161738739,pos,ns,0.786370203,Ttll11,Ttll11_Intergenic_upstream,2,36011563,36011612,36011563,36011564,50,+,CGCCGCCGCCGCCGCCGCACTATAATTTTCCAAACAGGATCTTGCAATCA,Distal Intergenic,2,35902351,35979913,77563,2,Ttll11-203,-31650,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,7,74410,ENSMUSG00000026885,mapped to different genes,2,36011338,36011579,242,*,242,25,0.669421488,0.936387556,0.103305785,1.00E-19,CpGisland,TRUE,U3,Pr-B
21433,cg12936001,-0.000013,0.00000275,-4.714860716,0.00000366,loss,ns,-0.00000257,0.00000467,-0.550328366,0.582490491,neg,ns,-0.001648986,0.001367876,-1.205508432,0.228926441,neg,ns,0.640304043,0.0000406,0.000047,0.862781624,0.388924515,pos,ns,0.941579708,Csf1,Csf1_threeUTR,3,107745786,107745835,107745786,107745787,50,+,CGTCACATTTTCAGAGGGACATTGACAAACGAGTGTGTCCAGGATGGTGA,3' UTR,3,107741048,107760236,19189,2,Csf1-202,14401,Csf1-202;Csf1-201;Csf1-204;Csf1-203;Csf1-206;Csf1-207;Csf1-205,Csf1;Csf1;Csf1;Csf1;Csf1;Csf1;Csf1,0;0;0;0;14407;4906;14386,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,1,12977,ENSMUSG00000014599,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6557,cg15767361,0.0000339,0.0000133,2.537904443,0.011641261,gain,ns,0.0000125,0.0000227,0.550261402,0.582536357,pos,ns,0.020130312,0.006644119,3.029793813,0.002653204,pos,ns,2.576229435,-0.000596141,0.000228491,-2.609040291,0.009519878,neg,ns,0.244037353,Cyp26a1,Cyp26a1_Intergenic_downstream,19,37702489,37702538,37702537,37702538,50,-,GACTGATAAAATGGCCCAGTCATGACCCTGTGAACCTTGGCTAACCTCCG,Downstream (<1kb),19,37698085,37699008,924,1,Cyp26a1-202,4453,Cyp26a1-201;Cyp26a1-202,Cyp26a1;Cyp26a1,0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,1,3,13082,ENSMUSG00000024987,conserved gene and region,19,37702509,37702695,187,*,187,12,0.56684492,0.803437164,0.064171123,0.000000285,CpGisland,TRUE,U7,En-W
9765,cg03490415,-0.0000138,0.00000574,-2.396548181,0.017142468,loss,ns,-0.00000536,0.00000975,-0.550081671,0.582659471,neg,ns,-0.00266707,0.002855656,-0.933960484,0.35105117,neg,ns,0.454629575,-0.0000299,0.0000982,-0.30490641,0.760642038,neg,ns,0.87989784,Prkd1,Prkd1_Intergenic_upstream,12,50712824,50712873,50712824,50712825,50,+,CGGCAAATTACTCATTTATTGTTACCTGAGCTGTGCAGAAGATTGAAATC,Distal Intergenic,12,50341231,50649098,307868,2,Prkd1-201,-63726,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,8,18760,ENSMUSG00000002688,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1092,cg05362669,0.00010582,0.0000128,8.295336929,3.35E-15,gain,yes,-0.0000119,0.0000217,-0.550080122,0.582660531,neg,ns,0.010062908,0.006349078,1.584939997,0.113999509,pos,ns,0.943097019,-0.000376614,0.000218344,-1.72486099,0.085549231,neg,ns,0.113329289,Ptprg,Ptprg_fiveUTR,14,11553524,11553573,11553572,11553573,50,+,ATGCTCACATGTTACTTCCTGTATGGAGGCATGGCCAGTTTCCAGCCCCG,Promoter (<=1kb),14,11553532,12242041,688510,1,Ptprg-201,0,Ptprg-201;Ptprg-204;Ptprg-205,Ptprg;Ptprg;Ptprg,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,8,23,19270,ENSMUSG00000021745,conserved gene and region,14,11553572,11554181,610,*,610,61,0.691803279,0.845835607,0.1,1.72E-46,CpGisland,TRUE,NA,NRS
4710,cg10809057,-0.000000195,0.00000175,-0.111195827,0.911533019,loss,ns,-0.00000164,0.00000298,-0.550068272,0.582668649,neg,ns,-0.001065353,0.000872252,-1.221382028,0.222869449,neg,ns,0.65194946,0.0000125,0.00003,0.416327384,0.67745855,pos,ns,0.97882123,Zfand3,Zfand3_Exon,17,30208101,30208150,30208149,30208150,50,-,ATCATGAAAATGGTGAAGCTGGACCGGAAAGTGGGGCGCTCCTGCCAGCG,"Exon (Zfand3-202/Zfand3, exon 6 of 6)",17,30004733,30210022,205290,1,Zfand3-202,203368,Zfand3-202;Zfand3-204;Zfand3-203;Zfand3-201;Zfand3-209;Zfand3-208;Zfand3-210;Zfand3-205,Zfand3;Zfand3;Zfand3;Zfand3;Zfand3;Zfand3;Zfand3;Zfand3,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,4,21769,ENSMUSG00000044477,conserved gene and region,17,30207987,30208198,212,*,212,17,0.613207547,0.853219697,0.080188679,1.19E-11,CpGisland,TRUE,NA,NRS
7605,cg08656426,-0.0000971,0.0000302,-3.216102453,0.001436645,loss,ns,-0.0000282,0.0000513,-0.550027558,0.58269654,neg,ns,0.039615721,0.015031564,2.635502294,0.008823782,pos,ns,2.054345232,-0.001596268,0.000516934,-3.087951319,0.002197689,neg,ns,0.765227101,Zbtb20,Zbtb20_Exon,16,43410634,43410683,43410634,43410635,50,-,CGTGTTTCATGTCAAAAGTAGCAAGAGGAATTTTAGTGAATGAACATCGT,"Exon (Gm15713-201/Gm15713-201, exon 5 of 5)",16,42875881,43463175,587295,1,Zbtb20-209,534753,Zbtb20-209;Zbtb20-211;Zbtb20-217;Zbtb20-218;Zbtb20-204;Zbtb20-215;Zbtb20-201;Zbtb20-203;Zbtb20-214;Zbtb20-213;Zbtb20-219;Zbtb20-216,Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,17,98,56490,ENSMUSG00000022708,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4651,cg07747635,-0.00000347,0.00000326,-1.0627728,0.288712187,loss,ns,-0.00000305,0.00000554,-0.549941607,0.582755421,neg,ns,-0.000237384,0.00162391,-0.146180431,0.883873964,neg,ns,0.053609659,-0.000114125,0.0000558,-2.04355943,0.041842143,neg,ns,0.045365014,Hes1,Hes1_Promoter,16,30065109,30065158,30065157,30065158,50,+,TAAAATCCTTTTGATTGACGTTGTAGCCTCCGGTGCCCTGGGCTCAGGCG,Promoter (<=1kb),16,30064384,30065580,1197,1,Hes1-202,725,Hes1-202;Hes1-201;Hes1-203;Hes1-204,Hes1;Hes1;Hes1;Hes1,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,3,20,15205,ENSMUSG00000022528,conserved gene and region,16,30065127,30065227,101,*,101,13,0.742574257,0.935185185,0.128712871,1.01E-11,CpGisland,TRUE,NA,NRS
7127,cg10779728,0.0000741,0.0000134,5.532260558,6.73E-08,gain,yes,-0.0000125,0.0000228,-0.549933367,0.582761066,neg,ns,0.023999827,0.006667638,3.599449757,0.000371127,pos,ns,3.430477289,-0.000486595,0.0002293,-2.122095702,0.03462247,neg,ns,0.334636332,Gm5973,Gm5973_Intergenic_upstream,1,41158034,41158083,41158034,41158035,50,+,CGGTGCTCGCAAACATGTGTAATTGTTGGAAGTGTAATGATGATTATTTG,Distal Intergenic,1,40863737,40864232,496,2,Gm5973-201,-293802,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,18,18,546733,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
523,cg22164364,0.00000323,0.00000561,0.57538951,0.565445301,gain,ns,-0.00000524,0.00000953,-0.549895233,0.582787191,neg,ns,0.00061232,0.002791273,0.219369601,0.826506517,pos,ns,0.082753717,-0.0001484,0.000096,-1.545970018,0.123132028,neg,ns,0.872667392,St18,St18_Intron,1,6767856,6767905,6767856,6767857,50,-,CGTCGAATGGCAGTAAAAGTGTGGCACATAAAAGGTTTATTAAAGGAAAT,"Intron (St18-208/St18, intron 4 of 23)",1,6487231,6860934,373704,1,St18-208,280625,St18-208;St18-204;St18-201;St18-206;St18-203;St18-210;St18-212;St18-207;St18-213,St18;St18;St18;St18;St18;St18;St18;St18;St18,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,20,240690,ENSMUSG00000033740,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17326,cg11777734,-0.00000176,0.00000449,-0.39087531,0.696157896,loss,ns,-0.0000042,0.00000763,-0.54985917,0.582811897,neg,ns,0.000135488,0.002235523,0.060606875,0.951711351,pos,ns,0.021494751,-0.00000749,0.0000769,-0.097428366,0.92244918,neg,ns,0.915553838,Ankfn1,Ankfn1_Intron,11,89718503,89718552,89718503,89718504,50,+,CGTGTAAACTTGTTGTCATCTAGACACATTAGCCGTGGTGGAGTCAATGA,"Intron (Ankfn1-208/Ankfn1, intron 3 of 21)",11,89391238,89841266,450029,2,Ankfn1-208,122714,Ankfn1-208;Ankfn1-204,Ankfn1;Ankfn1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,15,382543,ENSMUSG00000047773,mapped to different genes,11,89718503,89718683,181,*,181,11,0.502762431,0.971219512,0.060773481,0.00000179,CpGisland,TRUE,U15,NS
2180,cg11312528,0.0000205,0.0000111,1.843640019,0.066189918,gain,ns,-0.0000104,0.0000189,-0.549671562,0.582940435,neg,ns,0.038530585,0.005546796,6.94645806,2.21E-11,pos,yes,10.65569984,-0.001192315,0.000190754,-6.250544423,1.35E-09,neg,yes,0.251124218,Pou6f2,Pou6f2_Intron,13,18287436,18287485,18287484,18287485,50,-,TAAGATTGATTGTCAAGGGTCAAAAGGCTAGGTCAAACTCCGCTCATTCG,"Intron (Pou6f2-201/Pou6f2, intron 2 of 7)",13,18121098,18382041,260944,2,Pou6f2-201,94556,Pou6f2-201;Pou6f2-202;Pou6f2-203,Pou6f2;Pou6f2;Pou6f2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,18,218030,ENSMUSG00000009734,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6556,cg04396187,0.00000146,0.00000722,0.202342262,0.83978189,gain,ns,0.00000674,0.0000123,0.549628359,0.582970037,pos,ns,-0.001378238,0.003593706,-0.383514312,0.701601341,neg,ns,0.15390959,-0.000188221,0.000123587,-1.522977368,0.128783788,neg,ns,0.766368294,Zfp536,Zfp536_Intron,7,37700077,37700126,37700125,37700126,50,-,TTATAGTGGCAAACTATTGCCCCTCAGTTGGGAAAAATGACCTCCAGTCG,"Intron (Zfp536-202/Zfp536, intron 3 of 6)",7,37479104,37769624,290521,2,Zfp536-202,69498,Zfp536-202;Zfp536-201;Zfp536-203;Zfp536-206;Zfp536-209;Zfp536-208,Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,73,112,243937,ENSMUSG00000043456,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4954,cg27215796,-0.0000219,0.00000614,-3.564782544,0.000421562,loss,ns,0.00000573,0.0000104,0.54947278,0.583076643,pos,ns,-0.009179182,0.003053616,-3.006003794,0.002863367,neg,ns,2.543123019,0.000118668,0.000105014,1.130022424,0.259340349,pos,ns,0.875790286,Gm13426,Gm13426_Intergenic_downstream,2,31547788,31547837,31547788,31547789,50,-,CGAGACAAGAGGAGAAAAATAGAGGCAAACATCCGTAATTTTCTCTGTGG,Distal Intergenic,2,31551901,31552695,795,2,Gm13426-201,4907,Gm13426-201,Gm13426,4858,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,3,100416172,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25669,cg23667816,-0.00000169,0.00000241,-0.699323314,0.484874378,loss,ns,0.00000225,0.0000041,0.549345254,0.583164034,pos,ns,-0.000570738,0.001200604,-0.47537593,0.634853825,neg,ns,0.19732626,-0.00000194,0.0000413,-0.047055854,0.962499011,neg,ns,0.934777441,Eif4g3,Eif4g3_Exon,4,138170540,138170589,138170540,138170541,50,+,CGTTGCCAGAAGGAGTTTGAAAAAGATAAAGCAGATGATGATGTCTTTGA,"Exon (Eif4g3-203/Eif4g3, exon 18 of 34)",4,137993022,138208508,215487,1,Eif4g3-203,177518,Eif4g3-203;Eif4g3-202;Eif4g3-205;Eif4g3-215;Eif4g3-212,Eif4g3;Eif4g3;Eif4g3;Eif4g3;Eif4g3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,10,230861,ENSMUSG00000028760,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26227,cg03073207,-0.00000152,0.00000126,-1.207790226,0.228048588,loss,ns,0.00000117,0.00000214,0.549224475,0.583246806,pos,ns,0.000329913,0.000626378,0.526699325,0.598779065,pos,ns,0.222733392,-0.0000197,0.0000215,-0.913660685,0.361605218,neg,ns,0.97192107,Trrap,Trrap_Exon,5,144816395,144816444,144816395,144816396,50,+,CGCCCCCCACCACATCCATGACAACAACAAGAACCGCAACAGCAAGCTGC,"Exon (Trrap-203/Trrap, exon 38 of 71)",5,144768794,144859778,90985,1,Trrap-203,47601,Trrap-203;Trrap-201;Trrap-202;Trrap-215;Trrap-207;Trrap-206;Trrap-213;Trrap-210,Trrap;Trrap;Trrap;Trrap;Trrap;Trrap;Trrap;Trrap,0;0;0;0;0;0;4364;-3354,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,100683,ENSMUSG00000045482,conserved gene and region,5,144816354,144816464,111,*,111,9,0.612612613,0.929302326,0.081081081,0.00000221,CpGisland,TRUE,U10,Tr-S
12602,cg01344347,-0.00000191,0.00000148,-1.290270869,0.197918211,loss,ns,-0.00000138,0.00000251,-0.549062842,0.583357585,neg,ns,-0.000378192,0.000735904,-0.513914888,0.607677618,neg,ns,0.21632676,0.0000122,0.0000253,0.482435897,0.629836795,pos,ns,0.959753995,Zfp609,Zfp609_Exon,9,65794655,65794704,65794703,65794704,50,+,CTCATTCTCCCCTTCCTCTGGCTCCGGTTTAGTTCCCAAAGGATTGAGCG,"Exon (Zfp609-201/Zfp609, exon 2 of 10)",9,65692391,65827564,135174,2,Zfp609-201,32860,Zfp609-201;Zfp609-203,Zfp609;Zfp609,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,10,214812,ENSMUSG00000040524,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5441,cg17285910,-0.00000693,0.00000449,-1.54394966,0.123620713,loss,ns,-0.00000419,0.00000763,-0.549058127,0.583360816,neg,ns,0.002956399,0.002235519,1.322466708,0.186987618,pos,ns,0.728187152,-0.0000958,0.0000769,-1.245935972,0.213728686,neg,ns,0.870340284,Vps52,Vps52_threeUTR,17,33958601,33958650,33958601,33958602,50,+,CGAATGGAGCAGATGTTGGGAGCTTTTCAGAGTGACCTCAGCTCCATCAG,3' UTR,17,33955812,33967035,11224,1,Vps52-201,2789,Rps18-209;Rps18-206;Rps18-211;Rps18-201;Rps18-203;Rps18-205;Rps18-207;Rps18-208;Rps18-202;Vps52-201;Vps52-203;Vps52-206;Vps52-204;Vps52-205;Vps52-202;Vps52-207,Rps18;Rps18;Rps18;Rps18;Rps18;Rps18;Rps18;Rps18;Rps18;Vps52;Vps52;Vps52;Vps52;Vps52;Vps52;Vps52,-3389;-2938;-2938;-2924;-4111;-2941;-2948;-2941;-2600;0;0;0;0;-359;0;-3098,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,2,224705,ENSMUSG00000024319,conserved gene and region,17,33958555,33958722,168,*,168,10,0.583333333,0.710359408,0.05952381,0.00000754,CpGisland,TRUE,U10,Tr-S
25262,cg23844872,0.0000141,0.00000361,3.910369202,0.000113251,gain,ns,0.00000337,0.00000613,0.549007334,0.583395631,pos,ns,0.001923182,0.001796094,1.070758165,0.285111127,pos,ns,0.544985834,0.00000225,0.0000618,0.03650007,0.970907115,pos,ns,0.104804097,Cxxc4,Cxxc4_Exon,3,134240641,134240690,134240641,134240642,50,+,CGCAAAACGGGACACCAGATCTGCAAATTTAGAAAATGTGAAGAGCTAAA,"Exon (Cxxc4-203/Cxxc4, exon 3 of 4)",3,134236484,134259620,23137,1,Cxxc4-204,4157,Cxxc4-204;Cxxc4-203;Cxxc4-202;Cxxc4-201;Cxxc4-205,Cxxc4;Cxxc4;Cxxc4;Cxxc4;Cxxc4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,18,20,319478,ENSMUSG00000044365,conserved gene and region,3,134240265,134240649,385,*,385,21,0.587012987,0.63362069,0.054545455,5.57E-11,CpGisland,TRUE,U3,Pr-B
9154,cg26583835,-0.00000637,0.00000557,-1.143833986,0.25357497,loss,ns,-0.0000052,0.00000947,-0.548971007,0.583420531,neg,ns,0.003872688,0.002773407,1.396364607,0.163603748,pos,ns,0.786206752,-0.000275014,0.0000954,-2.88343355,0.004208811,neg,ns,0.900456635,Neurl1a,Neurl1a_Exon,19,47257463,47257512,47257511,47257512,50,-,CCCAGGTCTGGGCCAGTGGAGCGATGAGTGCACCATTTGCTATGAACACG,"Exon (Neurl1a-202/Neurl1a, exon 6 of 6)",19,47178820,47259441,80622,1,Neurl1a-202,78643,Neurl1a-202;Neurl1a-201;Sh3pxd2a-201,Neurl1a;Neurl1a;Sh3pxd2a,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,18011,ENSMUSG00000006435,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22940,cg15075184,0.0000609,0.00000703,8.671207222,2.44E-16,gain,yes,0.00000655,0.0000119,0.548769956,0.583558347,pos,ns,0.013835392,0.003498304,3.954885856,0.0000949,pos,ns,4.022568597,-0.000275436,0.000120306,-2.289457307,0.022724679,neg,ns,0.090139603,Isl1,Isl1_Intron,13,116308485,116308534,116308533,116308534,50,+,GATTGACTAACCGTTTACTTCCTACAGAGATAAACACACTTTTAGTGTCG,"Intron (Isl1-201/Isl1, intron 1 of 5)",13,116298281,116309689,11409,2,Isl1-201,1155,Isl1-201;Isl1-202;Isl1-204;Isl1-205,Isl1;Isl1;Isl1;Isl1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,14,16392,ENSMUSG00000042258,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
8568,cg08737024,-0.000033,0.00000734,-4.503081262,0.00000949,loss,ns,-0.00000684,0.0000125,-0.548636504,0.583649833,neg,ns,-0.011906172,0.003652115,-3.26007632,0.001237717,neg,ns,2.907378532,0.000157276,0.000125596,1.252241776,0.211425696,pos,ns,0.87209362,Btrc,Btrc_Intergenic_upstream,19,45338507,45338556,45338555,45338556,50,+,ACCTCGTTCGCCTGATCCTTACACAAAGTCATATATTTTACATGAGGACG,Distal Intergenic,19,45363734,45507736,144003,1,Btrc-204,-25178,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,98,12234,ENSMUSG00000025217,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12366,cg19607362,-0.00000435,0.00000193,-2.251049316,0.025082731,loss,ns,0.0000018,0.00000328,0.548560749,0.583701769,pos,ns,0.001150967,0.000960835,1.197882053,0.231878,pos,ns,0.634740453,-0.0000621,0.000033,-1.878108992,0.061304767,neg,ns,0.945609616,Klf7,Klf7_threeUTR,1,64033878,64033927,64033878,64033879,50,+,CGTGTCTTGAAGGGATGGTCCCAGAATATACAAAATATACAATCTGTCCT,3' UTR,1,64029447,64121491,92045,2,Klf7-202,87564,Klf7-202,Klf7,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,21,93691,ENSMUSG00000025959,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11471,cg05273715,-0.00000352,0.00000133,-2.646092417,0.008558254,loss,ns,0.00000124,0.00000226,0.548450857,0.583777113,pos,ns,-0.000809818,0.000661877,-1.223517742,0.22206339,neg,ns,0.653523035,0.0000345,0.0000228,1.516111787,0.130510097,pos,ns,0.045839024,Tsc22d2,Tsc22d2_Exon,3,58417419,58417468,58417419,58417420,50,+,CGGGCAAGTCGACGATACTAGAAGAAAATCAGAACCCCTACCTCAACCAC,"Exon (Tsc22d2-201/Tsc22d2, exon 1 of 4)",3,58414715,58466783,52069,1,Tsc22d2-201,2704,Tsc22d2-201;Tsc22d2-203;Tsc22d2-204;Tsc22d2-202,Tsc22d2;Tsc22d2;Tsc22d2;Tsc22d2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,7,72033,ENSMUSG00000027806,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
8292,cg02269624,0.00000754,0.00000585,1.28963414,0.198139022,gain,ns,0.00000545,0.00000993,0.548418015,0.583799631,pos,ns,0.005456817,0.002909388,1.875588926,0.061651462,pos,ns,1.210056623,-0.0000828,0.000100054,-0.827747888,0.40845005,neg,ns,0.925446637,Ebf1,Ebf1_Intron,11,44963701,44963750,44963749,44963750,50,+,GCTCAGAAAATCCAAGCATGATTGAAAACAAGATGTGTTAAATCAATGCG,"Intron (Ebf1-203/Ebf1, intron 10 of 15)",11,44617317,45004995,387679,1,Ebf1-203,346384,Ebf1-203;Ebf1-202;Ebf1-201;Ebf1-206,Ebf1;Ebf1;Ebf1;Ebf1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,80,13591,ENSMUSG00000057098,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26308,cg06337299,0.0000606,0.0000164,3.701482113,0.000253603,gain,ns,-0.0000153,0.0000278,-0.548384748,0.58382244,neg,ns,0.024568116,0.008147279,3.015499588,0.002777713,pos,ns,2.556312609,-0.000739123,0.000280184,-2.637989894,0.008760754,neg,ns,0.236628313,Ralgapa2,Ralgapa2_Intron,2,146330910,146330959,146330910,146330911,50,+,CGACTAATTGCATTACATCGCCAGCTGGCTCCAGAAGGAGTCGTCTGTTT,"Intron (Ralgapa2-202/Ralgapa2, intron 36 of 40)",2,146239879,146512004,272126,2,Ralgapa2-202,181045,Ralgapa2-202;Ralgapa2-211;Ralgapa2-210;Ralgapa2-205;Ralgapa2-208,Ralgapa2;Ralgapa2;Ralgapa2;Ralgapa2;Ralgapa2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,26,241694,ENSMUSG00000037110,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8749,cg11140169,-0.0000636,0.0000128,-4.981445599,0.00000105,loss,yes,-0.0000119,0.0000217,-0.548367814,0.583834052,neg,ns,-0.019726867,0.006355953,-3.103683449,0.002087492,neg,ns,2.68037512,0.000387735,0.000218581,1.773875612,0.077065311,pos,ns,0.846488439,Gm13478,Gm13478_Intergenic_downstream,2,45693854,45693903,45693854,45693855,50,+,CGTCAGCAGTAGGATGACAATTTCTCTGGTATGAATGATGTAACCAAATG,Distal Intergenic,2,45647191,45647603,413,1,Gm13478-201,46663,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,10,100042661,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8645,cg04335591,-0.0000483,0.0000186,-2.596014472,0.009880278,loss,ns,-0.0000173,0.0000316,-0.54833138,0.583859033,neg,ns,0.054029028,0.009253078,5.839033196,1.32E-08,pos,ns,7.877891412,-0.001845404,0.000318213,-5.799279529,1.64E-08,neg,yes,0.540206443,Btrc,Btrc_Intron,19,45476372,45476421,45476420,45476421,50,-,TAACAATTTCCCAATAAACTCTGACTTGTAATAACGTCGGCAAGAGTCCG,"Intron (Btrc-204/Btrc, intron 1 of 2)",19,45363734,45507736,144003,1,Btrc-204,112638,Btrc-204;Btrc-201;Btrc-210;Btrc-202;Btrc-203;Btrc-209,Btrc;Btrc;Btrc;Btrc;Btrc;Btrc,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,63,98,12234,ENSMUSG00000025217,conserved gene and region,19,45476406,45476490,85,*,85,8,0.623529412,1.011904762,0.094117647,0.00000348,CpGisland,TRUE,NA,NRS
26581,cg14494932,-0.00000638,0.00000805,-0.792286389,0.428799577,loss,ns,-0.0000075,0.0000137,-0.548303446,0.583878187,neg,ns,0.008355817,0.004005503,2.086084453,0.037788206,pos,ns,1.422643727,-0.000251624,0.000137749,-1.826684439,0.068708751,neg,ns,0.836000284,Casz1,Casz1_Intron,4,148930449,148930498,148930449,148930450,50,-,CGGGGAGCCCTGCGCAGCCACATAATTATGCATGTAAGATATAAACAGAG,"Intron (Casz1-201/Casz1, intron 5 of 15)",4,148804429,148945129,140701,1,Casz1-201,126020,Casz1-201;Casz1-202;Casz1-206;Casz1-204,Casz1;Casz1;Casz1;Casz1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,94,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1288,cg18798512,-0.0000168,0.00000491,-3.423078494,0.00070237,loss,ns,0.00000457,0.00000834,0.5481117,0.584009673,pos,ns,-0.005097413,0.002443432,-2.086169587,0.037780439,neg,ns,1.422732997,-0.00000972,0.000084,-0.115670424,0.907988638,neg,ns,0.866923825,Ptprg,Ptprg_Intron,14,12198871,12198920,12198871,12198872,50,-,CGTTTGCCAAAGATCTTTCACTCTGAATAAAGTAAATGTCATGTCTGTTG,"Intron (Ptprg-201/Ptprg, intron 15 of 29)",14,11553532,12242041,688510,1,Ptprg-201,645339,Ptprg-201;Ptprg-204;Ptprg-208;Ptprg-207;Ptprg-202,Ptprg;Ptprg;Ptprg;Ptprg;Ptprg,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,23,19270,ENSMUSG00000021745,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20505,cg19959167,-0.00000188,0.000000909,-2.062095857,0.040031691,loss,ns,-0.000000847,0.00000154,-0.548103451,0.58401533,neg,ns,0.000512416,0.000452615,1.132121956,0.258458107,pos,ns,0.587609842,-0.0000253,0.0000156,-1.627702714,0.104603831,neg,ns,0.970684905,Mier1,Mier1_Exon,4,103155490,103155539,103155490,103155491,50,-,CGAACAAGGTCAGTTGGTGAATGTGTAGCATTCTATTACATGTGGAAAAA,"Exon (Mier1-205/Mier1, exon 13 of 15)",4,103114395,103165754,51360,1,Mier1-205,41095,Mier1-205;Mier1-201;Mier1-202;Mier1-204;Mier1-203;Mier1-207,Mier1;Mier1;Mier1;Mier1;Mier1;Mier1,0;0;0;0;0;-3047,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,4,71148,ENSMUSG00000028522,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2251,cg19523620,-0.00000272,0.00000216,-1.261546843,0.208060332,loss,ns,-0.00000201,0.00000366,-0.54803058,0.584065303,neg,ns,-0.000706936,0.00107288,-0.658914074,0.510440066,neg,ns,0.292055244,-0.000000116,0.0000369,-0.003140309,0.99749642,neg,ns,0.963121728,Gm13333,Gm13333_Intergenic_downstream,2,18779731,18779780,18779731,18779732,50,-,CGTAAATTTCAAACAAATCTTTTAAGAGTAGGGTCCTATCCTGGAGGCAG,Distal Intergenic,2,18758984,18759764,781,1,Gm13333-201,20796,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,667493,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4917,cg21524116,-0.0000586,0.00000966,-6.067868128,3.78E-09,loss,yes,0.00000899,0.0000164,0.547651772,0.584325114,pos,ns,-0.011454857,0.0048096,-2.381665207,0.017837762,neg,ns,1.74865963,0.000076,0.000165402,0.459641552,0.646095704,pos,ns,0.805787351,Mkln1,Mkln1_Intron,6,31285292,31285341,31285292,31285293,50,+,CGTTAGCCAGTAAGAGAAGAGGGCTAAGTGTGTTCCAGGCAGAAGGAACA,"Intron (2210408F21Rik-208/2210408F21Rik-208, intron 2 of 5)",6,31398735,31516811,118077,1,Mkln1-201,-113394,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,3,27418,ENSMUSG00000025609,conserved gene and region,6,31285057,31285293,237,*,237,14,0.561181435,0.799518072,0.05907173,5.98E-08,CpGisland,TRUE,NA,NRS
7602,cg20425337,0.0000176,0.0000322,0.545568602,0.585754853,gain,ns,-0.0000299,0.0000547,-0.547493666,0.58443357,neg,ns,0.095487989,0.016014862,5.962460822,6.76E-09,pos,ns,8.169962564,-0.002241532,0.00055075,-4.069964333,0.0000597,neg,ns,0.496608798,Zbtb20,Zbtb20_Exon,16,43410472,43410521,43410472,43410473,50,-,CGGAAGGAGAATGTGGACCAAAAGATTGCGACAATCGGGTAATTATGGTT,"Exon (Gm15713-201/Gm15713-201, exon 5 of 5)",16,42875881,43463175,587295,1,Zbtb20-209,534591,Zbtb20-209;Zbtb20-211;Zbtb20-217;Zbtb20-218;Zbtb20-204;Zbtb20-215;Zbtb20-201;Zbtb20-203;Zbtb20-214;Zbtb20-213;Zbtb20-219;Zbtb20-216,Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,17,98,56490,ENSMUSG00000022708,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20388,cg05575208,0.000138208,0.00000941,14.6843695,2.01E-37,gain,yes,0.00000875,0.000016,0.547417866,0.584485569,pos,ns,0.01712035,0.004684396,3.654761421,0.000302231,pos,ns,3.51966135,-0.000292405,0.000161096,-1.815098363,0.070475039,neg,ns,0.184412052,Hoxc5,Hoxc5_Exon,15,103015326,103015375,103015326,103015327,50,+,CGCATAGAGATCGCCAACAACTTGTGTCTCAATGAGAGACAGATCAAGAT,"Exon (Hoxc5-202/Hoxc5, exon 2 of 2)",15,102967443,103015676,48234,1,Hoxc5-202,47883,Hoxc4-202;Hoxc5-202;Hoxc5-201;Hoxc6-202;Hoxc6-201,Hoxc4;Hoxc5;Hoxc5;Hoxc6;Hoxc6,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,72,134,15424,ENSMUSG00000022485,mapped to different genes,15,103015231,103015390,160,*,160,12,0.53125,1.081081081,0.075,5.15E-08,CpGisland,TRUE,U13,Hc-P
25254,cg06024489,0.00000333,0.00000173,1.92149087,0.055586515,gain,ns,-0.00000161,0.00000295,-0.54739992,0.584497881,neg,ns,-0.001219883,0.000863118,-1.413344713,0.158557712,neg,ns,0.799812629,0.0000138,0.0000297,0.463582725,0.643272055,pos,ns,0.069188714,Cxxc4,Cxxc4_Exon,3,134240367,134240416,134240367,134240368,50,-,CGCTATCCCGGCTTTAGGGGGCATCTCATTACCTCCAGGGGTCATCGTCA,"Exon (Cxxc4-203/Cxxc4, exon 3 of 4)",3,134236484,134259620,23137,1,Cxxc4-204,3883,Cxxc4-204;Cxxc4-203;Cxxc4-202;Cxxc4-201;Cxxc4-205,Cxxc4;Cxxc4;Cxxc4;Cxxc4;Cxxc4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,18,20,319478,ENSMUSG00000044365,mapped to different genes,3,134240265,134240649,385,*,385,21,0.587012987,0.63362069,0.054545455,5.57E-11,CpGisland,TRUE,U3,Pr-B
20695,cg25516331,0.0000122,0.00000168,7.238424347,3.60E-12,gain,yes,-0.00000156,0.00000286,-0.547383807,0.584508935,neg,ns,0.00066733,0.000837336,0.796968214,0.426079453,pos,ns,0.370509409,0.0000354,0.0000288,1.230523612,0.219433975,pos,ns,0.042597864,Gsc,Gsc_Exon,12,104476324,104476373,104476324,104476325,50,-,CGATTTCACACAAAGCAATCACCACGCAGAAGTCTATGAAAATGTGTTTG,Promoter (3-4kb),12,104471209,104473330,2122,2,Gsc-201,-3043,Gsc-201,Gsc,-2994,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,4,14836,ENSMUSG00000021095,conserved gene and region,12,104476028,104476349,322,*,322,19,0.540372671,0.81097561,0.059006211,1.41E-10,CpGisland,TRUE,U13,Hc-P
19216,cg24016385,0.0000675,0.0000109,6.221500563,1.59E-09,gain,yes,0.0000101,0.0000184,0.547295629,0.58456943,pos,ns,0.003556363,0.00540053,0.658521149,0.510692089,pos,ns,0.29184087,0.000478447,0.000185724,2.576123794,0.010454209,pos,ns,0.211379834,Wnt1,Wnt1_Intergenic_downstream,15,98796987,98797036,98797035,98797036,50,-,GTGAGCGAGCAGCAGGTTATAAATATGCCCAGGGAACTGCCGCCAACTCG,Distal Intergenic,15,98789857,98793837,3981,1,Wnt1-201,7179,Wnt1-201,Wnt1,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,12,22408,ENSMUSG00000022997,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
3316,cg01745621,-0.000000768,0.00000369,-0.208118475,0.835273127,loss,ns,0.00000343,0.00000627,0.547285492,0.584576385,pos,ns,-0.001177789,0.001836241,-0.641413479,0.521728017,neg,ns,0.28255584,0.00000923,0.0000631,0.146124049,0.883918435,pos,ns,0.514510453,Spopl,Spopl_threeUTR,2,23544802,23544851,23544802,23544803,50,-,CGAACTTCACTTTTGGGGCAGCTGACTAAAAGCAAATATAAGGACAAGTA,3' UTR,2,23506220,23572104,65885,2,Spopl-203,27253,Spopl-203;Spopl-201;Spopl-204;Spopl-202,Spopl;Spopl;Spopl;Spopl,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,3,76857,ENSMUSG00000026771,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4186,cg12856514,0.00000711,0.0000048,1.481758399,0.139420341,gain,ns,-0.00000446,0.00000815,-0.547141548,0.584675145,neg,ns,0.001842526,0.002388359,0.771460854,0.441021458,pos,ns,0.35554028,-0.000141853,0.0000821,-1.727061331,0.085152749,neg,ns,0.721538408,Igsf9b,Igsf9b_Exon,9,27324268,27324317,27324268,27324269,50,+,CGAGCAGACATTCTCAGTTTGGTACGGACCTCTGTGAGTCACCCCGGCAT,"Exon (Igsf9b-204/Igsf9b, exon 12 of 20)",9,27299204,27357546,58343,1,Igsf9b-204,25064,Igsf9b-204;Igsf9b-201;Igsf9b-202;Igsf9b-203,Igsf9b;Igsf9b;Igsf9b;Igsf9b,0;0;0;-2623,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,3,235086,ENSMUSG00000034275,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15556,cg26987152,0.000000798,0.00000343,0.23304804,0.815877902,gain,ns,0.00000318,0.00000582,0.547056472,0.584733519,pos,ns,0.004154328,0.001704865,2.43674887,0.015382418,pos,ns,1.812975401,-0.000122357,0.0000586,-2.086931706,0.037710974,neg,ns,0.932716879,Adgrl3,Adgrl3_Exon,5,81787426,81787475,81787474,81787475,50,+,GCTGCTCCAGGAGCCATGGCTAATCATCTTATAAGCAATGCTCTGCTTCG,"Exon (Adgrl3-203/Adgrl3, exon 26 of 27)",5,81020571,81796634,776064,1,Adgrl3-223,766855,Adgrl3-223;Adgrl3-203;Adgrl3-211;Adgrl3-217;Adgrl3-232;Adgrl3-207;Adgrl3-205;Adgrl3-206;Adgrl3-208;Adgrl3-212;Adgrl3-213;Adgrl3-214;Adgrl3-215;Adgrl3-216;Adgrl3-209;Adgrl3-218;Adgrl3-219;Adgrl3-204;Adgrl3-210;Adgrl3-201;Adgrl3-202;Adgrl3-220;Adgrl3-229;Adgrl3-235,Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,13,319387,ENSMUSG00000037605,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18575,cg12366733,0.0000164,0.00000548,2.989113281,0.003021734,gain,ns,-0.00000509,0.00000931,-0.547032392,0.584750042,neg,ns,-0.000264858,0.002728406,-0.097074356,0.922730075,neg,ns,0.034925324,0.0000344,0.0000938,0.366293992,0.714395572,pos,ns,0.027601035,Hoxb6,Hoxb6_fiveUTR,11,96299102,96299151,96299102,96299103,50,+,CGGCGCTCGGACTATAAAACACAACAAATCATAAACCCGGCGGAGCAGCA,5' UTR,11,96292476,96301569,9094,1,Hoxb6-202,6626,Hoxb5-202;Hoxb5-201;Hoxb6-202;Hoxb6-201,Hoxb5;Hoxb5;Hoxb6;Hoxb6,0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,6,16,15414,ENSMUSG00000000690,conserved gene and region,11,96299051,96299649,599,*,599,62,0.65442404,0.973218029,0.103505843,3.02E-48,CpGisland,TRUE,U3,Pr-B
11074,cg16573309,0.000100129,0.00000881,11.36005086,3.09E-25,gain,yes,0.00000819,0.000015,0.546927143,0.584822263,pos,ns,0.018828202,0.004386889,4.291925949,0.0000237,pos,ns,4.625081113,-0.000297385,0.000150865,-1.971202996,0.049589821,neg,ns,0.218485637,Nkx2-1,Nkx2-1_Intron,12,56520507,56520556,56520555,56520556,50,-,GAGAGCCCACACGCTTCCTAACAAGTCATTTTTAACAGTTACAAGCTTCG,"Intron (Sfta3-ps-201/Sfta3-ps-201, intron 1 of 6)",12,56531958,56535106,3149,2,Nkx2-1-202,14599,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,29,21869,ENSMUSG00000001496,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
9691,cg24069671,-0.0000323,0.0000098,-3.29509797,0.001097913,loss,ns,0.0000091,0.0000166,0.546915555,0.584830215,pos,ns,0.000588354,0.004876318,0.120655296,0.904042232,pos,ns,0.043811281,-0.000330012,0.000167696,-1.967917858,0.049968542,neg,ns,0.820742926,Gm7481,Gm7481_Intergenic_upstream,12,50082916,50082965,50082964,50082965,50,+,AACAAGATCATAATTTCCTTTAGCGTAATCACTGGCAGATTTATTTGGCG,Distal Intergenic,12,49840757,49841751,995,2,Gm7481-201,-241165,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,27,37,665077,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27020,cg22081728,0.0000356,0.00000922,3.858471784,0.000138826,gain,ns,-0.00000856,0.0000157,-0.546828534,0.584889931,neg,ns,0.015244249,0.004587448,3.32303459,0.000997071,pos,ns,3.00127411,-0.000677909,0.000157762,-4.297037532,0.0000232,neg,ns,0.116223245,Fam163a,Fam163a_Intron,1,156184353,156184402,156184401,156184402,50,-,CCTGGCTCCTGTCATCTTCGGGACTGAAAGCACTTAATGAATTAGTCTCG,"Intron (Fam163a-201/Fam163a, intron 1 of 4)",1,156075966,156205026,129061,2,Fam163a-201,20624,Fam163a-201,Fam163a,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,329274,ENSMUSG00000015484,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22805,cg23437184,0.0000116,0.00000189,6.152005717,2.36E-09,gain,yes,0.00000175,0.00000321,0.546794778,0.584913097,pos,ns,0.002061247,0.000939652,2.193628332,0.029004365,pos,ns,1.537536638,-0.00000264,0.0000323,-0.081714563,0.934926431,neg,ns,0.074428752,Dmbx1,Dmbx1_Intergenic_upstream,4,115963224,115963273,115963272,115963273,50,+,CCTTCATAATTGATTGACTCTATTTGCCGGATTGGGACTTCAAAGCGCCG,Distal Intergenic,4,115915120,115939926,24807,2,Dmbx1-202,-23298,Faah-202,Faah,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,15,42,140477,ENSMUSG00000028707,mapped to different genes,4,115962737,115963443,707,*,707,80,0.684582744,0.96711865,0.113154173,1.72E-65,CpGisland,TRUE,U3,Pr-B
16027,cg09224034,-0.000079,0.000013,-6.094337745,3.26E-09,loss,yes,0.000012,0.000022,0.546675841,0.584994721,pos,ns,-0.018308798,0.006451024,-2.838122569,0.004837304,neg,ns,2.315396584,0.000451088,0.00022185,2.033301452,0.042873644,pos,ns,0.660144329,Dysf,Dysf_Intron,6,84267012,84267061,84267012,84267013,50,-,CGGGTCCCTCATGACAAAGCAGAGAAGGGAGCCGGGCCCAGGGCCACGTA,"Intron (Gm44127-201/Gm44127-201, intron 1 of 1)",6,84210484,84211041,558,1,Dysf-207,56577,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,15,26903,ENSMUSG00000033788,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10492,cg01952529,-0.00000957,0.0000074,-1.293670157,0.196742435,loss,ns,0.00000687,0.0000126,0.546665665,0.585001705,pos,ns,0.000644476,0.003683165,0.174978713,0.861210589,pos,ns,0.064890639,-0.0000801,0.000126664,-0.632276274,0.527672407,neg,ns,0.584568727,Npas3,Npas3_Intron,12,53846760,53846809,53846760,53846761,50,-,CGACCAGTATAAACAGACTGGAGGGCACAAACCTAAATGAAAGCTATACT,"Intron (Npas3-204/Npas3, intron 4 of 10)",12,53248157,54069532,821376,1,Npas3-204,598603,Npas3-204;Npas3-201;Npas3-203,Npas3;Npas3;Npas3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,83,103,27386,ENSMUSG00000021010,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11478,cg10790969,0.0000008,0.0000032,0.250034396,0.802726362,gain,ns,0.00000297,0.00000544,0.546639572,0.585019613,pos,ns,0.003013933,0.001592943,1.892053366,0.059415591,pos,ns,1.226099579,-0.00000787,0.0000548,-0.143651336,0.885869134,neg,ns,0.92885235,Insyn1,Insyn1_Intergenic_upstream,9,58439168,58439217,58439168,58439169,50,+,CGGCATAAATTAGCGGAAGCCAGAGTGTAAAAATATGATTCTGTGAACAA,Distal Intergenic,9,58488603,58499742,11140,1,Insyn1-201,-49386,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,4,319477,ENSMUSG00000066607,mapped to different genes,9,58439117,58439269,153,*,153,13,0.568627451,1.054612937,0.08496732,2.55E-09,CpGisland,TRUE,U15,NS
7373,cg11100591,-0.0000232,0.00000672,-3.448143846,0.000642505,loss,ns,0.00000624,0.0000114,0.546577554,0.585062177,pos,ns,-0.00651784,0.003346322,-1.947762132,0.05234587,neg,ns,1.281117578,0.0000118,0.00011508,0.102749221,0.918228441,pos,ns,0.683307604,Gm16415,Gm16415_Intergenic_downstream,18,42442715,42442764,42442715,42442716,50,+,CGTTGCCATGGTCTGAAGAAGGACCTGTGGGTCTCCCCTGGCAGATGCTG,Distal Intergenic,18,42441019,42441507,489,1,Gm16415-201,1696,Gm16415-201,Gm16415,1696,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,4,100042767,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24132,cg03912320,-0.00000243,0.00000151,-1.603787213,0.109779269,loss,ns,-0.0000014,0.00000257,-0.54653742,0.585089723,neg,ns,-0.00089608,0.000753075,-1.189895197,0.23499807,neg,ns,0.628935705,0.00000632,0.0000259,0.243953954,0.807427853,pos,ns,0.957938012,Rnf34,Rnf34_Exon,5,122867201,122867250,122867201,122867202,50,-,CGCCAGCTGAAGGAAATTCTGGCTCGGAATTTTGTCAACTATTCTGGCTG,"Exon (Rnf34-201/Rnf34, exon 5 of 6)",5,122850048,122871291,21244,1,Rnf34-201,17153,Kdm2b-202;Kdm2b-201;Kdm2b-204;Kdm2b-203;Kdm2b-207;Kdm2b-205;Rnf34-201;Rnf34-202,Kdm2b;Kdm2b;Kdm2b;Kdm2b;Kdm2b;Kdm2b;Rnf34;Rnf34,0;0;0;0;0;0;0;17044,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,80751,ENSMUSG00000029474,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1220,cg14261068,0.0000987,0.0000114,8.673189612,2.40E-16,gain,yes,-0.0000106,0.0000193,-0.546515948,0.585104461,neg,ns,0.001523291,0.005661212,0.269075112,0.788050878,pos,ns,0.103445743,0.000143388,0.000194689,0.736497777,0.461984789,pos,ns,0.652652757,Bcor,Bcor_Intron,X,12070019,12070068,12070067,12070068,50,+,CAAAATGTCTCCTTTATGATTTTTGGTTAAGTTGAACATTTCCATAATCG,"Intron (Bcor-202/Bcor, intron 1 of 14)",20,12036740,12080553,43814,2,Bcor-202,10485,Bcor-202;Bcor-203;Bcor-204;Bcor-206;Bcor-201;Bcor-207;Bcor-205,Bcor;Bcor;Bcor;Bcor;Bcor;Bcor;Bcor,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,56,74,71458,ENSMUSG00000040363,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21483,cg08981194,-0.00000546,0.00000522,-1.044781011,0.296938193,loss,ns,0.00000485,0.00000888,0.546416276,0.585172874,pos,ns,0.001988241,0.002600494,0.76456298,0.445113415,pos,ns,0.351529317,-0.0000411,0.0000894,-0.460008771,0.645832393,neg,ns,0.115602515,Zfhx3,Zfhx3_Promoter,8,107943024,107943073,107943024,107943025,50,+,CGTCTGATCTTCAACAGATTGCTGTTGTTTCTTGTGATCACCAGCACAGC,Promoter (<=1kb),8,107942644,108961630,1018987,1,Zfhx3-204,380,Zfhx3-204,Zfhx3,0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,2,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
17045,cg24809422,0.0000242,0.00000571,4.236822616,0.0000299,gain,ns,0.0000053,0.00000969,0.54640734,0.585179007,pos,ns,0.001854798,0.002839809,0.653141814,0.514148963,pos,ns,0.288911036,-0.000121353,0.0000977,-1.24260001,0.214954369,neg,ns,0.843352714,Grm5,Grm5_Exon,7,88075062,88075111,88075062,88075063,50,-,CGCAGCCAGCAGATCCAGCAGCCTAGTCAACCTGTGGAAGAGAAGGGGCT,"Exon (Grm5-202/Grm5, exon 9 of 10)",7,87584393,88134907,550515,1,Grm5-202,490669,Grm5-202;Grm5-204;Grm5-201,Grm5;Grm5;Grm5,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,108071,ENSMUSG00000049583,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15811,cg10484939,0.000000983,0.00000151,0.650323388,0.515965012,gain,ns,0.0000014,0.00000257,0.546274378,0.585270276,pos,ns,-0.000316977,0.000752089,-0.421462812,0.673709247,neg,ns,0.171527491,0.0000457,0.0000259,1.766565869,0.078285019,pos,ns,0.043282216,Mef2c,Mef2c_fiveUTR,13,83524889,83524938,83524937,83524938,50,+,GACATCTTCGGGCTGCTATTGGATTGACTTTGAAGGTTCTGTGTGGGTCG,Promoter (<=1kb),13,83524891,83652910,128020,1,Mef2c-215,0,Mef2c-218;Mef2c-228;Mef2c-221;Mef2c-229;Mef2c-201;Mef2c-202;Mef2c-207;Mef2c-231;Mef2c-222;Mef2c-223;Mef2c-209;Mef2c-227;Mef2c-217;Mef2c-213;Mef2c-214;Mef2c-215;Mef2c-226,Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,9,41,17260,ENSMUSG00000005583,conserved gene and region,13,83524744,83524941,198,*,198,25,0.651515152,1.236263736,0.126262626,4.20E-22,CpGisland,TRUE,NA,NRS
23555,cg08763023,0.0000157,0.000015,1.046524377,0.296134287,gain,ns,-0.0000139,0.0000254,-0.546157924,0.58535022,neg,ns,0.002130449,0.007451444,0.285910827,0.775137378,pos,ns,0.11062132,-0.000138421,0.000256255,-0.540171119,0.589466869,neg,ns,0.448204076,Sp8,Sp8_Intergenic_downstream,12,118856533,118856582,118856581,118856582,50,-,AATTATGCAGTAACATTTCATGGGTTGTTGGAGTGGGAATTCCCACTGCG,Distal Intergenic,12,118847586,118848955,1370,1,Sp8-202,8996,Sp8-201,Sp8,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,29,320145,ENSMUSG00000048562,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
3125,cg07212773,0.00000807,0.0000124,0.652463547,0.514585697,gain,ns,0.0000115,0.000021,0.546091819,0.585395601,pos,ns,0.005551159,0.006156417,0.901686717,0.367923326,pos,ns,0.434242678,-0.000324571,0.000211719,-1.533030737,0.126288161,neg,ns,0.875869378,Trpm3,Trpm3_Exon,19,22885433,22885482,22885481,22885482,50,+,GCATGCACCGTTTTCTCACCATCTCCAGACTAGAGGAATTGTACAATACG,"Exon (Trpm3-218/Trpm3, exon 11 of 25)",19,22139046,22995410,856365,1,Trpm3-218,746387,Trpm3-218;Trpm3-202;Trpm3-203;Trpm3-213;Trpm3-222;Trpm3-207;Trpm3-209;Trpm3-214;Trpm3-216;Trpm3-223;Trpm3-224;Trpm3-201;Trpm3-204;Trpm3-206;Trpm3-217,Trpm3;Trpm3;Trpm3;Trpm3;Trpm3;Trpm3;Trpm3;Trpm3;Trpm3;Trpm3;Trpm3;Trpm3;Trpm3;Trpm3;Trpm3,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,12,226025,ENSMUSG00000052387,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15790,cg07636487,-0.00000868,0.0000104,-0.831896487,0.406107728,loss,ns,-0.00000968,0.0000177,-0.546053645,0.585421809,neg,ns,-0.00246762,0.005191615,-0.475308716,0.634901671,neg,ns,0.19729353,-0.0000244,0.000178539,-0.136718534,0.891342025,neg,ns,0.80254827,Dpf3,Dpf3_Intron,12,83476433,83476482,83476481,83476482,50,+,CTTGCTTGTTTCCACTTAGCATTCATCACAGGCAGAACTACCATAGAGCG,"Intron (Dpf3-207/Dpf3, intron 1 of 10)",12,83213751,83487716,273966,2,Dpf3-207,11234,Dpf3-207;Dpf3-206,Dpf3;Dpf3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,16,70127,ENSMUSG00000021221,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4189,cg12053353,-0.0000699,0.0000142,-4.928828287,0.00000135,loss,yes,0.0000131,0.0000241,0.545963138,0.585483947,pos,ns,-0.015042473,0.007055861,-2.131911821,0.033800069,neg,ns,1.471082414,0.000066,0.00024265,0.271823033,0.785939033,pos,ns,0.70557998,Gm7729,Gm7729_Intergenic_upstream,18,27398012,27398061,27398012,27398013,50,-,CGAAAGTTACTGATTGTAGCAAATTGAATGGCCTTTATTTCAGCATAATT,Distal Intergenic,18,27598644,27599756,1113,1,Gm7729-201,-200632,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,22,665646,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7687,cg16027853,0.0000015,0.00000552,0.272677556,0.785282633,gain,ns,0.00000512,0.00000937,0.5457978,0.585597469,pos,ns,-0.002045132,0.002746043,-0.744755998,0.456983457,neg,ns,0.340099522,0.000133147,0.0000944,1.409910311,0.159568656,pos,ns,0.917255548,Gm5364,Gm5364_Intron,9,43644322,43644371,43644370,43644371,50,-,TGCTTGTAAAATAGGGTCCTATTCAGCATATACTGATTGCTTCCAAAACG,"Intron (Gm29961-202/Gm29961-202, intron 1 of 3)",9,43683053,43683941,889,1,Gm5364-201,-38731,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,4,384931,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
158,cg07784624,0.00000717,0.00000575,1.245425251,0.213916004,gain,ns,0.00000533,0.00000978,0.545599058,0.585733939,pos,ns,-0.001560418,0.002863936,-0.544850916,0.586247799,neg,ns,0.231918775,0.000131231,0.0000985,1.332425089,0.183699142,pos,ns,0.800840321,Gria4,Gria4_Exon,9,4427068,4427117,4427068,4427069,50,-,CGTACCACCATTTGTTTTTCAGCTTGTCTAAGACGCCTGCCTCACTGAGT,"Exon (Gria4-202/Gria4, exon 15 of 17)",9,4417896,4796142,378247,2,Gria4-202,369025,Gria4-202;Gria4-204;Gria4-201,Gria4;Gria4;Gria4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,16,18,14802,ENSMUSG00000025892,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
410,cg07005121,0.00000754,0.00000824,0.914912961,0.36094842,gain,ns,-0.00000764,0.000014,-0.545582515,0.585745299,neg,ns,0.007116976,0.004103015,1.734572374,0.083810563,pos,ns,1.076701244,-0.000404928,0.000141102,-2.869747928,0.004390311,neg,ns,0.812192661,Gm5652,Gm5652_Intergenic_downstream,12,5552865,5552914,5552913,5552914,50,-,CCGAGACTTGCAGACTGATTGCTTTCATTAACTTTAATTGGATTCTTTCG,Distal Intergenic,12,5589617,5590624,1008,2,Gm5652-201,37759,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,435292,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24539,cg23981587,-0.00000271,0.00000537,-0.504449549,0.614303867,loss,ns,-0.00000498,0.00000912,-0.545565369,0.585757073,neg,ns,-0.002097391,0.002672824,-0.78470993,0.433222903,neg,ns,0.363288591,-0.00000387,0.0000919,-0.042106411,0.966440976,neg,ns,0.894697976,Taok2,Taok2_Exon,7,126868249,126868298,126868249,126868250,50,+,CGCAGAGCCTTGTACTGCCGAGTCTGGATCTTACACGTCTCCTGGAACTG,"Exon (Taok2-205/Taok2, exon 3 of 5)",7,126865678,126871641,5964,2,Taok2-205,3343,Hirip3-201;Hirip3-207;Hirip3-206;Hirip3-202;Hirip3-203;Hirip3-204;Hirip3-205;Taok2-205;Taok2-201;Taok2-203;Taok2-202,Hirip3;Hirip3;Hirip3;Hirip3;Hirip3;Hirip3;Hirip3;Taok2;Taok2;Taok2;Taok2,6277;5810;5785;5782;5768;4406;3833;0;0;-993;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,11,381921,ENSMUSG00000059981,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18750,cg09848046,-0.00000521,0.00000168,-3.098747646,0.002121505,loss,ns,-0.00000156,0.00000285,-0.545548965,0.585768339,neg,ns,-0.000543369,0.000836411,-0.649643362,0.516403686,neg,ns,0.287010666,0.0000138,0.0000288,0.481375591,0.630589194,pos,ns,0.968283195,Paqr3,Paqr3_Intergenic_upstream,5,97167850,97167899,97167898,97167899,50,+,GTGGGTGGGTCTGGGGGACAGGTCATTAGCCCCACGAAAAATAAATATCG,Distal Intergenic,5,97102142,97111596,9455,2,Paqr3-202,-56254,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,3,231474,ENSMUSG00000055725,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15903,cg26185802,-0.0000149,0.00000251,-5.947401905,7.34E-09,loss,yes,-0.00000232,0.00000426,-0.545324347,0.5859226,neg,ns,-0.003480736,0.001247388,-2.790420138,0.005590132,neg,ns,2.252577922,0.000049,0.0000429,1.142807479,0.254000356,pos,ns,0.955243206,Gm11434,Gm11434_Intergenic_downstream,11,83817236,83817285,83817236,83817237,50,-,CGGAACCTGTTCTCAGAGAAACATTCCATTTCACAGACCCTAATGGCTTT,Distal Intergenic,11,83800464,83801092,629,1,Gm11434-201,16821,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,676191,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20122,cg17438987,0.0000934,0.0000121,7.703104987,1.80E-13,gain,yes,-0.0000112,0.0000206,-0.545188633,0.586015813,neg,ns,0.015251354,0.006032469,2.528210727,0.01196083,pos,ns,1.922238686,-0.000413062,0.000207456,-1.991082263,0.047349335,neg,ns,0.094162436,Atp5g2,Atp5g2_Promoter,15,102672364,102672413,102672412,102672413,50,-,CAGGAATGTAATTTTGCCCGGATGAGGCCCCGAGTTTAATTATCCTCGCG,Promoter (<=1kb),15,102665801,102672352,6552,2,Atp5g2-203,-61,Atp5g2-202;Atp5g2-201;Atp5g2-204;Atp5g2-203,Atp5g2;Atp5g2;Atp5g2;Atp5g2,-1237;-4615;-4621;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,10,18,67942,ENSMUSG00000062683,mapped to different genes,15,102672078,102672489,412,*,412,37,0.621359223,0.940117176,0.089805825,1.33E-26,CpGisland,TRUE,U1,Pr-A
15198,cg05807730,0.00000354,0.00000194,1.82836815,0.068455139,gain,ns,0.00000179,0.00000329,0.545169719,0.586028804,pos,ns,0.001519201,0.000963357,1.57698613,0.115818602,pos,ns,0.93622168,-0.0000188,0.0000331,-0.567806671,0.57057725,neg,ns,0.045112768,Rhcg,Rhcg_Intron,7,79543471,79543520,79543519,79543520,50,+,ACAGACCCCAATTTTCTCCCCTTGGAGTTGAAACAAAACCTGAAAGCCCG,"Intron (Gm35040-201/Gm35040-201, intron 1 of 1)",7,79593369,79594929,1561,2,Rhcg-203,51409,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,9,56315,ENSMUSG00000030549,mapped to different genes,7,79543519,79543570,52,*,52,10,0.788461539,1.244019139,0.192307692,4.93E-11,CpGisland,TRUE,U13,Hc-P
3429,cg00910419,0.0000352,0.00000232,15.16571914,3.02E-39,gain,yes,-0.00000215,0.00000394,-0.545167587,0.586030268,neg,ns,0.002946539,0.001153809,2.553748816,0.011135292,pos,ns,1.953298405,0.0000183,0.0000397,0.461341593,0.64487708,pos,ns,0.060360863,Bcl11a,Bcl11a_fiveUTR,11,24078020,24078069,24078068,24078069,50,-,CCCATGTTTTGTGTGTCTCTGTCCATCCAGACTCCTGACGTTCAAGTTCG,Promoter (<=1kb),11,24078056,24173194,95139,1,Bcl11a-201,0,A830031A19Rik-201;Bcl11a-201;Bcl11a-203;Bcl11a-205;Bcl11a-202;Bcl11a-204,A830031A19Rik;Bcl11a;Bcl11a;Bcl11a;Bcl11a;Bcl11a,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,10,98,14025,ENSMUSG00000000861,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3472,cg01460788,-0.00000151,0.00000185,-0.814825555,0.415797701,loss,ns,0.00000171,0.00000314,0.545016257,0.586134217,pos,ns,0.000853696,0.000920397,0.9275297,0.35437316,pos,ns,0.450539178,-0.00000923,0.0000317,-0.291475764,0.770882416,neg,ns,0.953023984,Bcl11a,Bcl11a_Exon,11,24163509,24163558,24163509,24163510,50,-,CGGAAGAGATGGCCCTGGCCACCCATCACCCGAGTGCCTTTGACAGGGTG,"Exon (Bcl11a-201/Bcl11a, exon 4 of 5)",11,24078056,24173194,95139,1,Bcl11a-201,85453,Bcl11a-201;Bcl11a-203;Bcl11a-202;Bcl11a-204;Bcl11a-206,Bcl11a;Bcl11a;Bcl11a;Bcl11a;Bcl11a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,Exon,51,98,14025,ENSMUSG00000000861,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3109,cg22254756,0.0000337,0.0000117,2.868190995,0.004411405,gain,ns,0.0000109,0.00002,0.544981497,0.586158095,pos,ns,0.017581284,0.00584501,3.007913688,0.002845947,pos,ns,2.545773196,-0.0000986,0.000201009,-0.490313448,0.624258959,neg,ns,0.232138755,Lrmda,Lrmda_Intron,14,22783316,22783365,22783316,22783317,50,-,CGAAATAGATGCCGACTGTAGGAAATGAGATATCCATCATAGGCTTGTGT,"Intron (Lrmda-201/Lrmda, intron 5 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,763604,Lrmda-201;Lrmda-204;Lrmda-206,Lrmda;Lrmda;Lrmda,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27906,cg03141679,-0.00000227,0.00000155,-1.466160066,0.143618295,loss,ns,0.00000143,0.00000263,0.544965721,0.586168932,pos,ns,0.000555337,0.000770037,0.721182585,0.471340718,pos,ns,0.326665041,-0.0000542,0.0000265,-2.046165346,0.04158349,neg,ns,0.95983735,Prox1,Prox1_Exon,1,190161750,190161799,190161750,190161751,50,+,CGCTTTGCTCTCAGGTGCTCATCACATAAGCGATCCATATCAAACTGGCT,"Exon (Prox1-202/Prox1, exon 2 of 5)",1,190118035,190170714,52680,2,Prox1-202,8915,Prox1-202;Prox1-201;Prox1-203,Prox1;Prox1;Prox1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,19,59,19130,ENSMUSG00000010175,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26731,cg23124809,-0.00000897,0.00000393,-2.279156222,0.023337311,loss,ns,-0.00000364,0.00000668,-0.544869832,0.586234804,neg,ns,0.004632589,0.001957844,2.366168162,0.018588015,pos,ns,1.730766996,-0.000181725,0.0000673,-2.699014081,0.007335913,neg,ns,0.930234149,Huwe1,Huwe1_Exon,X,151907317,151907366,151907317,151907318,50,+,CGATGGCTCTGAGATGGAATTGGATGAGGATTATCCTGATATGAACGCTT,"Exon (Huwe1-201/Huwe1, exon 54 of 83)",20,151803327,151935417,132091,1,Huwe1-201,103990,Huwe1-201;Huwe1-202;Huwe1-219;Huwe1-208;Huwe1-215,Huwe1;Huwe1;Huwe1;Huwe1;Huwe1,0;0;0;-1479;-1479,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,22,28,59026,ENSMUSG00000025261,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18626,cg24434183,0.000052,0.00000724,7.182081958,5.13E-12,gain,yes,-0.0000067,0.0000123,-0.544837736,0.586256854,neg,ns,0.00289911,0.003605335,0.804116766,0.421945743,pos,ns,0.37474339,0.0000633,0.000123987,0.510736493,0.609899094,pos,ns,0.071228294,Hoxb3,Hoxb3_Intron,11,96341187,96341236,96341235,96341236,50,+,TGGCGGAGAGTATGTCTCAATGATTTATGGCCCATATGACTCCAATCTCG,"Intron (Hoxb3-202/Hoxb3, intron 2 of 3)",11,96323326,96347930,24605,1,Hoxb3-202,17861,Hoxb3-202;Hoxb3-203;Hoxb3-204;Hoxb3-201,Hoxb3;Hoxb3;Hoxb3;Hoxb3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,19,15410,ENSMUSG00000048763,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
25479,cg14297905,0.0000283,0.0000121,2.343837925,0.01971784,gain,ns,0.0000112,0.0000205,0.544728322,0.586332023,pos,ns,-0.004671589,0.006007713,-0.7775986,0.437398705,neg,ns,0.359122508,0.000256243,0.000206605,1.240259146,0.215817472,pos,ns,0.736576582,Plp1,Plp1_Exon,X,136832067,136832116,136832067,136832068,50,-,CGACTACAAGACCACCATCTGCGGCAAGGGCCTGAGCGCAACGGTAACAG,"Exon (Plp1-201/Plp1, exon 3 of 7)",20,136822671,136839733,17063,1,Plp1-201,9396,Plp1-201;Plp1-202;Plp1-203;Plp1-204,Plp1;Plp1;Plp1;Plp1,0;0;0;-1135,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,8,18823,ENSMUSG00000031425,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6320,cg12340709,0.00000517,0.0000113,0.458858976,0.646656992,gain,ns,-0.0000104,0.0000192,-0.54448615,0.586498415,neg,ns,-0.007791458,0.005610491,-1.388730153,0.165911754,neg,ns,0.780122846,0.000302726,0.000192944,1.5689822,0.117672213,pos,ns,0.730655761,Tenm2,Tenm2_Intron,11,36887654,36887703,36887702,36887703,50,-,CACTTCAAAGTAAACCGCTCATAAATATGAAATGAAAAGCCGAGGAGTCG,"Intron (Tenm2-202/Tenm2, intron 3 of 30)",11,36006656,37235882,1229227,2,Tenm2-202,348179,Tenm2-202;Tenm2-208;Tenm2-201;Tenm2-204,Tenm2;Tenm2;Tenm2;Tenm2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,47,84,23964,ENSMUSG00000049336,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9385,cg17693281,0.00000646,0.00000749,0.862687158,0.388976385,gain,ns,-0.00000693,0.0000127,-0.544470363,0.586509262,neg,ns,0.001002348,0.003728015,0.268869184,0.788209201,pos,ns,0.1033585,-0.0000538,0.000128206,-0.419996081,0.674779261,neg,ns,0.841703045,Tmem260,Tmem260_threeUTR,14,48513275,48513324,48513323,48513324,50,+,TCTGATCAAAGGTCTCCTGTGGAGCTTGCATGGTTCCCTTTCATACTACG,3' UTR,14,48446124,48520368,74245,1,Tmem260-210,67151,Tmem260-210;Tmem260-202;Tmem260-209;Tmem260-201;Tmem260-204;Tmem260-205,Tmem260;Tmem260;Tmem260;Tmem260;Tmem260;Tmem260,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,11,218989,ENSMUSG00000036339,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22221,cg06923126,0.0000358,0.0000252,1.422544354,0.155873733,gain,ns,0.0000233,0.0000428,0.544315011,0.586616014,pos,ns,0.024820668,0.012528355,1.9811594,0.048456761,pos,ns,1.314645615,-0.000911677,0.000430849,-2.116000172,0.035141754,neg,ns,0.726983484,Gm26897,Gm26897_Intergenic_downstream,5,111958246,111958295,111958294,111958295,50,+,CTGGCAGATCCTGACAGGTGATAAATACAATCTTTTCCGCCCCGCATGCG,Distal Intergenic,5,111733924,111734574,651,1,Gm26897-201,224322,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,11,23,,NA,mapped to different genes,5,111958283,111958414,132,*,132,12,0.636363636,0.9,0.090909091,5.67E-09,CpGisland,TRUE,U15,NS
18354,cg18015472,-0.0000126,0.0000104,-1.219809832,0.223464169,loss,ns,0.00000957,0.0000176,0.544132485,0.58674145,pos,ns,-0.013188669,0.005153854,-2.558991332,0.010972253,neg,ns,1.959704171,0.000298471,0.000177241,1.683984802,0.093191182,pos,ns,0.204958309,Otp,Otp_Promoter,13,94869334,94869383,94869382,94869383,50,-,TGGAAGATCGATCTTCTCTGTAGATTTCTCTAATTGAGTGAATATAGACG,Promoter (6-7kb),13,94875602,94885130,9529,1,Otp-201,-6268,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,27,34,18420,ENSMUSG00000021685,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1093,cg03520983,0.000142073,0.0000161,8.838807624,7.40E-17,gain,yes,-0.0000149,0.0000273,-0.543970636,0.586852688,neg,ns,0.012828174,0.008000094,1.603502902,0.109841997,pos,ns,0.959231581,-0.000487064,0.000275123,-1.770351412,0.077651405,neg,ns,0.137394295,Ptprg,Ptprg_fiveUTR,14,11553526,11553575,11553574,11553575,50,-,GCTCACATGTTACTTCCTGTATGGAGGCATGGCCAGTTTCCAGCCCCGCG,Promoter (<=1kb),14,11553532,12242041,688510,1,Ptprg-201,0,Ptprg-201;Ptprg-204;Ptprg-205,Ptprg;Ptprg;Ptprg,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,8,23,19270,ENSMUSG00000021745,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5960,cg12202772,-0.00000477,0.00000824,-0.578944491,0.563047042,loss,ns,-0.00000761,0.000014,-0.543912724,0.586892492,neg,ns,-0.003544052,0.004100661,-0.864263635,0.388111323,neg,ns,0.411043687,0.000078,0.000141021,0.553047052,0.580629787,pos,ns,0.929616452,Matr3,Matr3_Exon,18,35572642,35572691,35572642,35572643,50,-,CGTTCTCAAGAATCTGGTTATTATGACAGAATGGATTATGAAGATGACAG,"Exon (Matr3-205/Matr3, exon 2 of 3)",18,35562138,35577876,15739,1,Matr3-205,10504,Matr3-205;Matr3-211;Matr3-201;Matr3-218;Matr3-210;Matr3-207;Matr3-209;Matr3-213;Matr3-214;Matr3-215;Matr3-202;Matr3-217;Matr3-208;Matr3-206;Matr3-204;Matr3-212;Snhg4-201;Snhg4-203;Snhg4-207;Snhg4-208;Snhg4-205;Snhg4-206;Snhg4-204,Matr3;Matr3;Matr3;Matr3;Matr3;Matr3;Matr3;Matr3;Matr3;Matr3;Matr3;Matr3;Matr3;Matr3;Matr3;Matr3;Snhg4;Snhg4;Snhg4;Snhg4;Snhg4;Snhg4;Snhg4,0;10496;0;10450;0;0;0;0;0;0;0;0;0;9959;0;0;19238;0;0;19230;19229;0;19204,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,Exon,4,5,17184,ENSMUSG00000037236,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
4851,cg03280281,-0.0000035,0.00000195,-1.795018388,0.073624776,loss,ns,0.0000018,0.00000331,0.543854122,0.586932772,pos,ns,0.00132457,0.000969912,1.365660041,0.173035733,pos,ns,0.761864204,-0.000058,0.0000334,-1.737446384,0.083301566,neg,ns,0.092242027,Prkci,Prkci_Exon,3,30996041,30996090,30996041,30996042,50,-,CGGGGACCATTCCCACCAGGTCCGGGTGAAAGCCTACTACCGCGGGTGAG,Promoter (<=1kb),3,30995747,31052959,57213,1,Prkci-201,294,Prkci-201,Prkci,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,18759,ENSMUSG00000037643,conserved gene and region,3,30995676,30996327,652,*,652,75,0.702453988,0.968220968,0.115030675,4.90E-62,CpGisland,TRUE,U1,Pr-A
14003,cg17764331,-0.0000225,0.00000501,-4.493553619,0.0000099,loss,ns,-0.00000463,0.00000852,-0.543819535,0.586956546,neg,ns,-0.004226576,0.002495714,-1.693533416,0.091358479,neg,ns,1.039251139,-0.0000199,0.0000858,-0.231666708,0.816949735,neg,ns,0.913156365,Gm13668,Gm13668_Intergenic_upstream,2,74151949,74151998,74151997,74151998,50,+,TTGCACTGAACTGTGCCTTCACATTAAGCAAGATACTTATTCTGGCTTCG,Distal Intergenic,2,73959669,73960669,1001,2,Gm13668-201,-191280,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,18,20,667729,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6689,cg13488611,-0.00000821,0.00000358,-2.291460728,0.022607175,loss,ns,-0.00000331,0.00000609,-0.543750307,0.587004133,neg,ns,-0.001651188,0.001783561,-0.925781618,0.355279616,neg,ns,0.449429709,0.000108938,0.0000613,1.776064727,0.076703077,pos,ns,0.931708491,Dennd1a,Dennd1a_Intron,2,38023567,38023616,38023567,38023568,50,+,CGTCCAAATAGGGAGACACAGCGTCAGAGACAAATCCTGCGCCTTATTTT,"Intron (Dennd1a-201/Dennd1a, intron 8 of 21)",2,37798991,38287375,488385,2,Dennd1a-201,263759,Dennd1a-201;Dennd1a-207;Dennd1a-210;Dennd1a-204;Dennd1a-202,Dennd1a;Dennd1a;Dennd1a;Dennd1a;Dennd1a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,46,227801,ENSMUSG00000035392,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24888,cg21852818,0.00000593,0.00000276,2.147370192,0.032538995,gain,ns,0.00000255,0.00000469,0.543734676,0.587014878,pos,ns,0.00235435,0.001373628,1.713965356,0.087534672,pos,ns,1.05781989,-0.0000807,0.0000472,-1.708736408,0.088500689,neg,ns,0.049846708,Pitx2,Pitx2_threeUTR,3,129218779,129218828,129218779,129218780,50,-,CGAGCCTGGCCAGCCTGAGACTGAAAGCAAAGCAGCACTCCAGCTTCGGC,3' UTR,3,129199878,129219590,19713,1,Pitx2-207,18901,Pitx2-207;Pitx2-201;Pitx2-203;Pitx2-204;Pitx2-208;Pitx2-202;Pitx2-206,Pitx2;Pitx2;Pitx2;Pitx2;Pitx2;Pitx2;Pitx2,0;0;0;0;0;0;4504,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,7,24,18741,ENSMUSG00000028023,mapped to different genes,3,129218825,129218932,108,*,108,13,0.694444444,0.998577525,0.12037037,2.57E-11,CpGisland,TRUE,U13,Hc-P
12624,cg26496365,-0.000000245,0.00000272,-0.090123355,0.928247391,loss,ns,-0.00000251,0.00000463,-0.543674158,0.587056479,neg,ns,0.002865471,0.001355014,2.114716732,0.035251939,pos,ns,1.452816992,-0.0000684,0.0000466,-1.467979204,0.143123752,neg,ns,0.938472512,Kcnq3,Kcnq3_Exon,15,66005819,66005868,66005819,66005820,50,-,CGGAAACGCTCTTTATTGTTTAAGCCAACAGGCTTTGGTTCTTTAGAAGG,"Exon (Kcnq3-201/Kcnq3, exon 10 of 15)",15,65986387,66286642,300256,2,Kcnq3-201,280774,Kcnq3-201,Kcnq3,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,110862,ENSMUSG00000056258,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25639,cg05486822,-0.00000655,0.00000918,-0.714268324,0.475598746,loss,ns,0.00000847,0.0000156,0.54364375,0.587077383,pos,ns,0.001516116,0.004567094,0.331965204,0.740139865,pos,ns,0.130686203,-0.00000953,0.000157062,-0.060663443,0.951666336,neg,ns,0.867899249,Rap1gap,Rap1gap_Exon,4,137717954,137718003,137718002,137718003,50,-,GACCGAATCTGTGTACTGCAACTTCCGCAACAAGGAGATCATGTTTCACG,"Exon (Rap1gap-211/Rap1gap, exon 11 of 11)",4,137680753,137717956,37204,1,Rap1gap-211,37201,Rap1gap-207;Rap1gap-213;Rap1gap-211;Rap1gap-203;Rap1gap-201;Rap1gap-206;Rap1gap-202;Rap1gap-208,Rap1gap;Rap1gap;Rap1gap;Rap1gap;Rap1gap;Rap1gap;Rap1gap;Rap1gap,53228;37201;0;0;0;30536;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,110351,ENSMUSG00000041351,conserved gene and region,4,137717919,137718036,118,*,118,9,0.576271186,0.91948052,0.076271186,0.00000366,CpGisland,TRUE,U11,Tr-P
26741,cg04010303,0.00000416,0.00000289,1.436328916,0.151917143,gain,ns,-0.00000267,0.00000492,-0.54363546,0.587083082,neg,ns,-0.001985559,0.001440053,-1.378809959,0.168947431,neg,ns,0.772248409,-0.00000566,0.0000495,-0.114345194,0.90903818,neg,ns,0.915249604,Huwe1,Huwe1_Exon,X,151923583,151923632,151923583,151923584,50,-,CGGAGACAGCAACAAGCAGCAACGGTTAGCATGATGCCTGTGGCCCCTCA,"Exon (Huwe1-201/Huwe1, exon 72 of 83)",20,151803327,151935417,132091,1,Huwe1-201,120256,Huwe1-201;Huwe1-202;Huwe1-209;Huwe1-205;Huwe1-213,Huwe1;Huwe1;Huwe1;Huwe1;Huwe1,0;0;2301;0;-626,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,22,28,59026,ENSMUSG00000025261,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20823,cg14201131,-0.0000497,0.00000781,-6.364442405,7.04E-10,loss,yes,0.00000721,0.0000133,0.543572461,0.587126391,pos,ns,0.029376378,0.003888363,7.554947457,4.75E-13,pos,yes,12.32354384,-0.001036074,0.00013372,-7.748055459,1.34E-13,neg,yes,0.788218976,Apbb1,Apbb1_fiveUTR,7,105565562,105565611,105565562,105565563,50,+,CGATGTTCTTGGCAGGTGCCTCACAGCGAAACACGTGGCACTTGAGCATC,5' UTR,7,105558483,105581653,23171,2,Apbb1-217,16042,Apbb1-217;Apbb1-209;Apbb1-215;Apbb1-212;Apbb1-219;Apbb1-201;Apbb1-208;Apbb1-214;Apbb1-213;Apbb1-205;Apbb1-221;Apbb1-218;Apbb1-202;Apbb1-210;Apbb1-207;Apbb1-206;Apbb1-220;Apbb1-204;Apbb1-203;Apbb1-216,Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1,0;0;0;0;0;0;0;0;0;0;0;-57;0;0;3352;3654;3660;3662;0;3059,TRUE,FALSE,FALSE,TRUE,TRUE,TRUE,TRUE,FALSE,FALSE,fiveUTR,6,8,11785,ENSMUSG00000037032,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12011,cg12387067,-0.00000354,0.00000247,-1.436106633,0.15198033,loss,ns,-0.00000228,0.00000419,-0.543555809,0.587137838,neg,ns,-0.000796497,0.001227456,-0.64890073,0.516882969,neg,ns,0.286607778,-0.000103502,0.0000422,-2.451960592,0.014759313,neg,ns,0.017647662,Anp32a,Anp32a_fiveUTR,9,62341383,62341432,62341431,62341432,50,-,AGAACCGAGCGGAGCTGGTTGAGCCTTCAAAGTCCTAAAACGCGCGGCCG,Promoter (<=1kb),9,62341293,62377701,36409,1,Anp32a-207,90,Anp32a-207;Anp32a-201;Anp32a-203;Anp32a-205;Anp32a-210;Anp32a-208;Anp32a-202,Anp32a;Anp32a;Anp32a;Anp32a;Anp32a;Anp32a;Anp32a,0;0;0;0;-1032;-2631;-3367,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,9,11737,ENSMUSG00000032249,mapped to different genes,9,62340767,62341614,848,*,848,72,0.632075472,0.85274934,0.08490566,2.37E-49,CpGisland,TRUE,U1,Pr-A
6490,cg02087737,0.00000325,0.0000058,0.55980452,0.576017045,gain,ns,-0.00000535,0.00000985,-0.543369891,0.587265659,neg,ns,-0.007178553,0.002886643,-2.486817075,0.013415096,neg,ns,1.872406222,0.0000716,0.0000993,0.7209446,0.471486925,pos,ns,0.833632829,Zfp536,Zfp536_Intron,7,37505289,37505338,37505289,37505290,50,-,CGCATAGATGACAATCTTTAATCACAGATGAAGCGGCAGGTCGTTAGAAT,"Intron (Zfp536-211/Zfp536, intron 1 of 3)",7,37318024,37568390,250367,2,Zfp536-211,63052,Zfp536-211;Zfp536-202;Zfp536-201;Zfp536-203;Zfp536-206,Zfp536;Zfp536;Zfp536;Zfp536;Zfp536,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,73,112,243937,ENSMUSG00000043456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2696,cg11527171,-0.0000032,0.00000221,-1.446388472,0.14907858,loss,ns,-0.00000204,0.00000376,-0.543149151,0.587417436,neg,ns,-0.001193702,0.001101324,-1.083879131,0.279260655,neg,ns,0.553990248,0.000021,0.0000379,0.555513896,0.578943871,pos,ns,0.943121654,Ilf3,Ilf3_threeUTR,9,21400426,21400475,21400474,21400475,50,-,CTCTGCTCTGTCTCCCCCTTTTGTAGGTGACTTTTTCACAGACTGCTACG,3' UTR,9,21367871,21405360,37490,1,Ilf3-201,32555,Ilf3-201;Ilf3-203;Ilf3-206;Ilf3-213;Ilf3-202;Ilf3-204;Ilf3-208;Ilf3-216;Ilf3-211;Ilf3-214;Ilf3-212;Ilf3-205,Ilf3;Ilf3;Ilf3;Ilf3;Ilf3;Ilf3;Ilf3;Ilf3;Ilf3;Ilf3;Ilf3;Ilf3,0;0;0;0;0;0;0;0;0;0;0;-3158,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,5,11,16201,ENSMUSG00000032178,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20310,cg21429502,0.000105494,0.0000166,6.36782211,6.91E-10,gain,yes,0.0000153,0.0000281,0.543072377,0.58747023,pos,ns,0.018422791,0.008245416,2.23430716,0.026175496,pos,ns,1.582105084,-0.00033927,0.000283559,-1.196469411,0.232427688,neg,ns,0.445321779,Hoxc5,Hoxc5_Exon,15,102994015,102994064,102994015,102994016,50,+,CGCTTTTATTGTGCTTCTAACCCCAGTAGAGTAGAACTAAATTGCACTGA,"Exon (Hoxc8-202/Hoxc8, exon 1 of 1)",15,102967443,103015676,48234,1,Hoxc5-202,26572,Hoxc5-202;Hoxc6-202;Hoxc8-201;Hoxc8-202,Hoxc5;Hoxc6;Hoxc8;Hoxc8,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,72,134,15424,ENSMUSG00000022485,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
1495,cg12022849,-0.00000725,0.00000245,-2.959527143,0.00331861,loss,ns,0.00000226,0.00000416,0.543031402,0.587498406,pos,ns,0.000316613,0.001218659,0.259804056,0.795187383,pos,ns,0.099530519,-0.0000563,0.0000419,-1.342975817,0.180262228,neg,ns,0.950037002,Phactr2,Phactr2_Exon,10,13261871,13261920,13261871,13261872,50,-,CGATGGGTATCATGTGCCCGTTTGAATTTTCAAAGTTAACTGTTACATCT,"Exon (Phactr2-203/Phactr2, exon 4 of 13)",10,13207717,13474412,266696,2,Phactr2-203,212492,Phactr2-203;Phactr2-202;Phactr2-204;Phactr2-201,Phactr2;Phactr2;Phactr2;Phactr2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,5,215789,ENSMUSG00000062866,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7358,cg22479030,0.0000424,0.00000787,5.391751806,0.000000139,gain,yes,0.00000726,0.0000134,0.543005414,0.587516278,pos,ns,0.001139074,0.003917372,0.290775054,0.771417802,pos,ns,0.112710343,0.000102632,0.000134718,0.761826911,0.446742511,pos,ns,0.070745249,Pou4f3,Pou4f3_Promoter,18,42394801,42394850,42394849,42394850,50,-,TTTTGACAGGCACTAGCTTCATGTTTTTTTCATGTCGCCCAGAACAATCG,Promoter (<=1kb),18,42394539,42397249,2711,1,Pou4f3-201,262,Pou4f3-201;Pou4f3-202,Pou4f3;Pou4f3,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,4,17,18998,ENSMUSG00000024497,conserved gene and region,18,42394836,42394895,60,*,60,8,0.683333333,1.379310345,0.133333333,0.000000221,CpGisland,TRUE,U13,Hc-P
3882,cg16285232,0.0000322,0.00000522,6.166170758,2.18E-09,gain,yes,0.00000481,0.00000886,0.542994035,0.587524103,pos,ns,0.008976253,0.002595817,3.457968021,0.00062037,pos,ns,3.207349552,-0.000164849,0.0000893,-1.846637712,0.065752648,neg,ns,0.122670298,Celf4,Celf4_Exon,18,25678849,25678898,25678897,25678898,50,-,CTGATATCACACCCAGTTAGGGGGGCCATAAATAATTCTCTTCTCCCCCG,"Exon (Celf4-205/Celf4, exon 2 of 2)",18,25477632,25753983,276352,2,Celf4-202,75085,Celf4-202;Celf4-201;Celf4-203;Celf4-207;Celf4-206;Celf4-209;Celf4-205,Celf4;Celf4;Celf4;Celf4;Celf4;Celf4;Celf4,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,31,59,108013,ENSMUSG00000024268,conserved gene but different region,18,25678897,25679808,912,*,912,95,0.70504386,0.852420307,0.104166667,7.22E-74,CpGisland,TRUE,NA,NRS
12553,cg12951432,0.0000585,0.0000205,2.855023457,0.004593526,gain,ns,0.0000189,0.0000348,0.542951373,0.587553441,pos,ns,0.019222559,0.010196645,1.885184705,0.060339998,pos,ns,1.219394708,-0.000450096,0.000350662,-1.283562988,0.200253531,neg,ns,0.55272525,Klhl5,Klhl5_fiveUTR,5,65131375,65131424,65131375,65131376,50,+,CGATCACTTGGTTTCTCTGAGGATGTCTGGTTCTCGTAAAGAGTTTGATG,Promoter (<=1kb),5,65131403,65134532,3130,1,Klhl5-206,0,Klhl5-204;Klhl5-201;Klhl5-205;Klhl5-207;Klhl5-206;Klhl5-203,Klhl5;Klhl5;Klhl5;Klhl5;Klhl5;Klhl5,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,4,71778,ENSMUSG00000054920,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8542,cg01327047,0.0000597,0.0000079,7.561262848,4.56E-13,gain,yes,-0.00000729,0.0000134,-0.542916757,0.587577247,neg,ns,-0.003774843,0.003932758,-0.959846137,0.337880684,neg,ns,0.471236635,0.000379514,0.000135247,2.806077708,0.005332061,pos,ns,0.688821093,Btrc,Btrc_Intron,19,45317671,45317720,45317719,45317720,50,+,ACTTTGCTTTCTACATATAAATACAGATAGCAATCACACCCCAATCAGCG,"Intron (Gm28578-208/Gm28578-208, intron 3 of 6)",19,45363734,45507736,144003,1,Btrc-204,-46014,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,63,98,12234,ENSMUSG00000025217,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18202,cg03683773,-0.000000246,0.000000861,-0.285455066,0.775486157,loss,ns,-0.000000794,0.00000146,-0.542848084,0.587624475,neg,ns,-0.0000367,0.000428643,-0.085588477,0.931848809,neg,ns,0.030654545,-0.00000872,0.0000147,-0.591865209,0.55437224,neg,ns,0.97333015,Ap3b1,Ap3b1_Exon,13,94471681,94471730,94471729,94471730,50,-,ATTGCTTACCCAGTACATATTAAATCTCGGCAAGTATGATCAAAACTACG,"Exon (Ap3b1-201/Ap3b1, exon 16 of 27)",13,94358960,94566317,207358,1,Ap3b1-201,112721,Ap3b1-201;Ap3b1-205,Ap3b1;Ap3b1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,55,11774,ENSMUSG00000021686,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7723,cg03231157,0.0000361,0.00000926,3.896201954,0.00011975,gain,ns,0.00000854,0.0000157,0.542826105,0.587639591,pos,ns,0.004330539,0.004609901,0.939399672,0.348256949,pos,ns,0.45810021,0.0000238,0.000158534,0.150403491,0.880544101,pos,ns,0.775814387,Arhgap15,Arhgap15_Intron,2,43979025,43979074,43979025,43979026,50,+,CGGTTGCTGGCCTGAAACAGTATTATTTATATAGAACATTTACGTTTGTT,"Intron (Arhgap15-203/Arhgap15, intron 6 of 14)",2,43748824,44395953,647130,1,Arhgap15-203,230201,Arhgap15-203;Arhgap15-202;Arhgap15-201,Arhgap15;Arhgap15;Arhgap15,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,72,78,76117,ENSMUSG00000049744,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15591,cg11986053,-0.0000176,0.00000741,-2.374025477,0.018204223,loss,ns,0.00000683,0.0000126,0.542774608,0.587675008,pos,ns,-0.002545856,0.003688152,-0.690279538,0.490534879,neg,ns,0.309330107,-0.000138431,0.000126835,-1.09142665,0.275932732,neg,ns,0.772682557,Bnc1,Bnc1_Intergenic_upstream,7,82034169,82034218,82034169,82034170,50,-,CGGTTCCAAGAAGAAAATTAAAGGCTGCTCCCGAGATGAGCACAGTCATT,Distal Intergenic,7,81966653,81992307,25655,2,Bnc1-201,-41911,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,12173,ENSMUSG00000025105,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8628,cg02202691,-0.0000215,0.00000542,-3.964401696,0.0000914,loss,ns,0.00000499,0.0000092,0.542717767,0.587714103,pos,ns,-0.001908943,0.002695603,-0.708169184,0.479372325,neg,ns,0.319327042,0.000159318,0.0000927,1.718606811,0.086684369,pos,ns,0.91447236,Btrc,Btrc_Intron,19,45474612,45474661,45474612,45474613,50,-,CGCAGGAAACAAGCTGTTTAAATTCAGATTATGCTGAAGCAAAATGGTCC,"Intron (Btrc-204/Btrc, intron 1 of 2)",19,45363734,45507736,144003,1,Btrc-204,110878,Btrc-204;Btrc-201;Btrc-210;Btrc-202;Btrc-203;Btrc-209,Btrc;Btrc;Btrc;Btrc;Btrc;Btrc,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,63,98,12234,ENSMUSG00000025217,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
862,cg05803862,-0.0000285,0.00000798,-3.57242856,0.000409914,loss,ns,-0.00000736,0.0000136,-0.542650714,0.587760222,neg,ns,-0.011924206,0.003971795,-3.002221071,0.002898157,neg,ns,2.537878042,0.000242675,0.00013659,1.776671983,0.076602842,pos,ns,0.806897504,Ttc32,Ttc32_Intergenic_downstream,12,9158951,9159000,9158999,9159000,50,+,TAGAGACAGAACATCAATTGTAGTTTAGCTCTACAATGGGGAAACTCACG,Distal Intergenic,12,9030028,9036397,6370,1,Ttc32-202,128923,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,4,75516,ENSMUSG00000066637,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22362,cg19981533,-0.00000137,0.00000126,-1.086707635,0.278010285,loss,ns,-0.00000116,0.00000215,-0.542437429,0.587906931,neg,ns,-0.001469313,0.000628873,-2.336421812,0.020106175,neg,ns,1.696670546,0.0000416,0.0000216,1.925485394,0.055083208,pos,ns,0.039460303,Snx18,Snx18_Exon,13,113618278,113618327,113618278,113618279,50,+,CGAGCCAGCCCTCGATGTCCTGCTCGCTGCACAGGCTCAGCACCTCGTGC,Promoter (<=1kb),13,113592179,113618564,26386,2,Snx18-201,237,Snx18-201;Snx18-202;Snx18-203,Snx18;Snx18;Snx18,0;-4637;-4264,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,170625,ENSMUSG00000042364,conserved gene and region,13,113617579,113618748,1170,*,1170,155,0.732478633,0.987691302,0.132478633,1.76E-138,CpGisland,TRUE,U1,Pr-A
16825,cg12716758,-0.0000105,0.0000037,-2.824178046,0.005047232,loss,ns,0.00000341,0.00000629,0.542422004,0.587917541,pos,ns,-0.002224708,0.00184178,-1.207912002,0.228001806,neg,ns,0.642061713,-0.0000232,0.0000633,-0.367070578,0.713816816,neg,ns,0.925699534,Lrba,Lrba_Intron,3,86668210,86668259,86668258,86668259,50,+,GTTCCTGATATCATTATACCTTACTCATTAATCATATTTCCTGCAGCCCG,"Intron (Lrba-202/Lrba, intron 47 of 50)",3,86224680,86746712,522033,1,Lrba-202,443530,Gm3788-201;Lrba-202;Lrba-204;Lrba-201;Lrba-206,Gm3788;Lrba;Lrba;Lrba;Lrba,3909;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,45,80877,ENSMUSG00000028080,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7478,cg26213949,0.0000796,0.0000121,6.599622415,1.78E-10,gain,yes,-0.0000111,0.0000205,-0.542345804,0.58796996,neg,ns,0.021535409,0.0060029,3.587500751,0.000387833,pos,ns,3.411354747,-0.000666874,0.000206439,-3.23036652,0.001369085,neg,ns,0.323122297,Pou3f3,Pou3f3_Intron,1,42741808,42741857,42741808,42741809,50,-,CGGGTGAGTGCTACATCTCTAGGCGCACTGCCAACAGAGGTCACCTATCC,"Intron (Gm20646-201/Gm20646-201, intron 1 of 1)",1,42695768,42703176,7409,1,Pou3f3-201,46089,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,37,18993,ENSMUSG00000045515,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13119,cg04398312,0.000109496,0.0000126,8.723158259,1.69E-16,gain,yes,0.0000116,0.0000213,0.542135166,0.588114872,pos,ns,0.012158283,0.006247444,1.946121263,0.052543522,pos,ns,1.279480817,-0.0000722,0.000214849,-0.336205425,0.736943417,neg,ns,0.624745066,Tcf4,Tcf4_Intron,18,69517471,69517520,69517471,69517472,50,+,CGACAGAGCCCTGGACGGGTGCCCATTGATGTCATGGAAACACTCAAATT,"Intron (Tcf4-259/Tcf4, intron 5 of 6)",18,69343356,69564082,220727,1,Tcf4-259,174115,Tcf4-259;Tcf4-201;Tcf4-207;Tcf4-210;Tcf4-240;Tcf4-254;Tcf4-246;Tcf4-206;Tcf4-202;Tcf4-257;Tcf4-232;Tcf4-248;Tcf4-231;Tcf4-205;Tcf4-253;Tcf4-233;Tcf4-238;Tcf4-245;Tcf4-249;Tcf4-219;Tcf4-235;Tcf4-227;Tcf4-250;Tcf4-229;Tcf4-260;Tcf4-226;Tcf4-216;Tcf4-256;Tcf4-230;Tcf4-221;Tcf4-234;Tcf4-258;Tcf4-217;Tcf4-247;Tcf4-252;Tcf4-218;Tcf4-209;Tcf4-208;Tcf4-243;Tcf4-237;Tcf4-239;Tcf4-262,Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,42,66,21413,ENSMUSG00000053477,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16879,cg14830088,0.000037,0.00000596,6.203980775,1.76E-09,gain,yes,-0.00000549,0.0000101,-0.542112397,0.588130538,neg,ns,0.015243797,0.002964904,5.14141273,0.000000484,pos,ns,6.31519177,-0.000538867,0.000101963,-5.284933871,0.000000238,neg,yes,0.079075674,Irf2bpl,Irf2bpl_Promoter,12,86893626,86893675,86893674,86893675,50,+,GAATTAATGCCAGACATAGTTTTCCTGAACTCTATCCAACCGCCTAAGCG,Promoter (8-9kb),12,86880701,86884798,4098,2,Irf2bpl-201,-8828,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,5,6,238330,ENSMUSG00000034168,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
18776,cg26845090,-0.00000649,0.00000305,-2.127168592,0.03419534,loss,ns,0.00000281,0.00000518,0.542040603,0.588179934,pos,ns,-0.00057815,0.001517873,-0.380894879,0.703542143,neg,ns,0.152709883,-0.0000395,0.0000522,-0.7561613,0.450126717,neg,ns,0.96083389,Gm12696,Gm12696_Intergenic_downstream,4,97281088,97281137,97281136,97281137,50,-,TATTTCCACATAATTAGTTTGTTTTCCACTTGAAATCAAAAAACGATTCG,Distal Intergenic,4,97521428,97522332,905,2,Gm12696-201,241244,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,3,620883,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25827,cg27583524,0.000107462,0.0000192,5.599609949,4.74E-08,gain,yes,0.0000177,0.0000326,0.542029413,0.588187633,pos,ns,0.004260796,0.009551576,0.446083071,0.655848651,pos,ns,0.18319637,0.000548357,0.000328478,1.669389168,0.096049755,pos,ns,0.546127382,Uncx,Uncx_Intergenic_downstream,5,139585522,139585571,139585522,139585523,50,+,CGGAAAATTGAGTCCAGATTCATTAGGTTTTTCAGTGTGCCGCTCAAGTC,Distal Intergenic,5,139543898,139545268,1371,1,Uncx-202,41624,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,59,88,22255,ENSMUSG00000029546,conserved gene and region,5,139585354,139585726,373,*,373,27,0.616621984,0.761512287,0.072386059,4.94E-17,CpGisland,TRUE,U13,Hc-P
11790,cg14700515,-0.00000473,0.00000542,-0.872196905,0.383775991,loss,ns,0.00000499,0.00000921,0.541961391,0.588234436,pos,ns,0.010753954,0.00269686,3.987583,0.0000833,pos,ns,4.079281981,-0.000434683,0.0000927,-4.686873546,0.00000416,neg,ns,0.862246489,Mbnl1,Mbnl1_Intron,3,60621305,60621354,60621353,60621354,50,+,CCATAATAACAATTTTTCTTCTTTGTTCAAATGAATTTTCTAATTACACG,"Intron (Mbnl1-216/Mbnl1, intron 6 of 6)",3,60473074,60621458,148385,1,Mbnl1-216,148231,Mbnl1-216;Mbnl1-211;Mbnl1-201;Mbnl1-202;Mbnl1-203;Mbnl1-218;Mbnl1-219;Mbnl1-214;Mbnl1-207;Mbnl1-205;Mbnl1-212;Mbnl1-215;Mbnl1-223;Mbnl1-213,Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,36,56758,ENSMUSG00000027763,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20871,cg16113298,0.00000455,0.00000153,2.976027285,0.003149905,gain,ns,-0.00000141,0.0000026,-0.541944394,0.588246132,neg,ns,0.000163855,0.00076049,0.215460327,0.829550127,pos,ns,0.081157366,-0.00000236,0.0000262,-0.090355021,0.92806345,neg,ns,0.027567251,Pax6,Pax6_fiveUTR,2,105675534,105675583,105675582,105675583,50,-,TGGAGGATGATGACAGAGGTCAGGCTTCGCTAATGGGCCAGTGAGGAGCG,5' UTR,2,105668900,105697364,28465,1,Pax6-206,6634,Pax6-206;Pax6-207;Pax6-210;Pax6-214;Pax6-208;Pax6-217;Pax6-226;Pax6-220;Pax6-202;Pax6-205;Pax6-225;Pax6-204;Pax6-201;Pax6-203;Pax6-224;Pax6-219,Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,15,78,18508,ENSMUSG00000027168,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
11010,cg04256367,-0.0000041,0.00000661,-0.61944915,0.536075503,loss,ns,-0.00000608,0.0000112,-0.541600787,0.588482582,neg,ns,0.001196873,0.00329136,0.363640875,0.716374066,pos,ns,0.144860145,-0.0000238,0.00011319,-0.210075764,0.833746543,neg,ns,0.848167999,Habp2,Habp2_Intergenic_upstream,19,56234720,56234769,56234768,56234769,50,-,AGTCAAATGTTCAATCAATCAATCACGTTCATAACTTGCAGCTACAATCG,Distal Intergenic,19,56287137,56320089,32953,1,Habp2-201,-52417,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,5,226243,ENSMUSG00000025075,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15465,cg23236002,-0.00000507,0.00000196,-2.593012675,0.009965045,loss,ns,0.0000018,0.00000332,0.541564352,0.588507657,pos,ns,0.001295538,0.000973981,1.330147569,0.184447406,pos,ns,0.734127448,-0.0000575,0.0000335,-1.71654045,0.08706209,neg,ns,0.95303724,Asic2,Asic2_Exon,11,80971546,80971595,80971546,80971547,50,+,CGTGGTGAGCAGAGGTTTGCCATCCTCGCCTGAGTTAAACATGTAACACT,"Exon (Asic2-201/Asic2, exon 2 of 10)",11,80880169,81153321,273153,2,Asic2-201,181726,Asic2-201;Asic2-202,Asic2;Asic2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,10,11418,ENSMUSG00000020704,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24397,cg14381766,0.00000594,0.00000425,1.396440941,0.163580794,gain,ns,0.00000391,0.00000723,0.54156171,0.588509475,pos,ns,0.001068276,0.002117404,0.504521672,0.614253256,pos,ns,0.211652532,-0.000021,0.0000728,-0.288986849,0.772784598,neg,ns,0.912761596,Slc12a1,Slc12a1_Exon,2,125165475,125165524,125165523,125165524,50,+,TTTTTCCTCTTTCAACTGAGGTCTTGGTGTGATTATCATCGGCTTAGCCG,"Exon (Slc12a1-202/Slc12a1, exon 5 of 27)",2,125152505,125230002,77498,1,Slc12a1-202,12970,Slc12a1-202;Slc12a1-204;Slc12a1-203;Slc12a1-201,Slc12a1;Slc12a1;Slc12a1;Slc12a1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,20495,ENSMUSG00000027202,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10857,cg08026739,-2.47E-08,0.00000178,-0.013841753,0.988965136,loss,ns,0.00000164,0.00000303,0.541361056,0.588647577,pos,ns,0.001544463,0.000886769,1.741674228,0.082557376,pos,ns,1.08324412,-0.000047,0.0000305,-1.541746206,0.124155418,neg,ns,0.0397316,Klf4,Klf4_Intergenic_upstream,4,55651603,55651652,55651603,55651604,50,-,CGACAAGAAACGGGGTGATGTCAGACAGCCTTCCAGGATTAGAAACCCTT,Distal Intergenic,4,55527143,55532466,5324,2,Klf4-201,-119186,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,3,16600,ENSMUSG00000003032,conserved gene and region,4,55651420,55651614,195,*,195,22,0.692307692,0.947856827,0.112820513,2.64E-18,CpGisland,TRUE,U1,Pr-A
11936,cg02366337,-0.0000502,0.0000046,-10.91285545,1.11E-23,loss,yes,-0.00000423,0.00000782,-0.541196511,0.588760837,neg,ns,0.003136714,0.002289829,1.36984599,0.171726338,pos,ns,0.765163091,-0.00024814,0.0000787,-3.151105493,0.001785393,neg,ns,0.91002556,Macroh2a2,Macroh2a2_Exon,10,61741235,61741284,61741283,61741284,50,-,TGTCGGAGCCCCACTGAGGGATGTGACAGTGGATGACAAATTTGGCTGCG,"Exon (Macroh2a2-201/Macroh2a2, exon 8 of 9)",10,61738665,61784147,45483,2,Macroh2a2-201,42863,Aifm2-204;Aifm2-201;Aifm2-203;Aifm2-202;Macroh2a2-201,Aifm2;Aifm2;Aifm2;Aifm2;Macroh2a2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,404634,ENSMUSG00000020086,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6648,cg17663920,-0.00000315,0.00000374,-0.84161218,0.400653826,loss,ns,-0.00000344,0.00000635,-0.54119106,0.58876459,neg,ns,-0.003156118,0.001860757,-1.696147447,0.090861866,neg,ns,1.041618348,-0.0000798,0.000064,-1.246312394,0.213590702,neg,ns,0.898071677,Uri1,Uri1_Intergenic_downstream,7,37910181,37910230,37910181,37910182,50,-,CGGCAACTGTTCAAAGGTCAGAGGACTTTGTGGCCTGGAAATACCCACCA,Distal Intergenic,7,37961301,37962528,1228,2,Uri1-203,52347,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,19,27,19777,ENSMUSG00000030421,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5147,cg19897940,-3.52E-08,0.00000324,-0.01085997,0.991342153,loss,ns,0.00000298,0.00000551,0.541181472,0.588771189,pos,ns,0.003739261,0.001612793,2.318500411,0.021072407,pos,ns,1.67628585,0.0000139,0.0000555,0.251014658,0.801969075,pos,ns,0.084872764,Fli1,Fli1_Intron,9,32541661,32541710,32541661,32541662,50,-,CGCACACAGGATACTTGCTCCTGGGAGATAAGAGCTAGCCGGGAACAATG,"Intron (Fli1-202/Fli1, intron 1 of 6)",9,32428059,32542861,114803,2,Fli1-202,1151,Fli1-201;Fli1-202,Fli1;Fli1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,15,14247,ENSMUSG00000016087,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
22608,cg17655112,0.0000144,0.00000378,3.806132476,0.000170093,gain,ns,-0.00000347,0.00000642,-0.541111515,0.588819346,neg,ns,-0.001394222,0.001879498,-0.741805693,0.458766698,neg,ns,0.338408115,0.0000885,0.0000646,1.369004461,0.171988974,pos,ns,0.93461781,Maf,Maf_Intergenic_downstream,8,115429146,115429195,115429146,115429147,50,-,CGGCACTGTCAGATGGGAGACACTCTCCAACAAACAAAAGCCTAATGACC,Distal Intergenic,8,115682942,115707096,24155,2,Maf-201,277950,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,23,17132,ENSMUSG00000055435,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17761,cg10797933,-0.00000188,0.0000016,-1.176536357,0.24028325,loss,ns,0.00000147,0.00000272,0.541023163,0.588880168,pos,ns,0.000679253,0.000797337,0.851901825,0.394926212,pos,ns,0.403484041,-0.00000941,0.0000274,-0.343338402,0.73157662,neg,ns,0.970226711,Son,Son_Exon,16,91656300,91656349,91656348,91656349,50,+,CGCTGGAGATCTCTGTTCAGTCTGTGGTGACAACATCGGAGCTGTCAACG,"Exon (Son-203/Son, exon 3 of 12)",16,91647506,91679207,31702,1,Son-203,8794,Son-203;Son-204;Son-202;Son-208;Son-201;Son-205;Son-212,Son;Son;Son;Son;Son;Son;Son,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,31,20658,ENSMUSG00000022961,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16883,cg14208910,-0.00000473,0.0000015,-3.155045433,0.001762205,loss,ns,0.00000138,0.00000255,0.540864702,0.588989261,pos,ns,-0.00000494,0.000745691,-0.006620194,0.994722146,neg,ns,0.002298213,-0.0000452,0.0000256,-1.763557937,0.078791489,neg,ns,0.036039417,Irf2bpl,Irf2bpl_Promoter,12,86894703,86894752,86894751,86894752,50,-,TGGGGACAGGAGGCTATCAGAATGGCCTTGTGATCCGCAGCCTCTCTGCG,Promoter (9-10kb),12,86880701,86884798,4098,2,Irf2bpl-201,-9954,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,5,6,238330,ENSMUSG00000034168,mapped to different genes,12,86894738,86894787,50,*,50,9,0.84,1.193633952,0.18,1.31E-09,CpGisland,TRUE,NA,NRS
20625,cg11480265,-0.000000481,0.00000152,-0.316390656,0.751918944,loss,ns,0.0000014,0.00000258,0.540848961,0.589000098,pos,ns,0.001488291,0.0007564,1.967596178,0.050005757,pos,ns,1.300979992,-0.0000591,0.000026,-2.272175752,0.023760602,neg,ns,0.953615873,Magi3,Magi3_threeUTR,3,104016630,104016679,104016678,104016679,50,-,AGCCCTGAAAGCCTTAATGTTGCTCGGGTTTCACGTAGGAGCACAGACCG,3' UTR,3,104013259,104220374,207116,2,Magi3-201,203695,Magi3-201;Magi3-202;Magi3-203;Phtf1-207,Magi3;Magi3;Magi3;Phtf1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,3,99470,ENSMUSG00000052539,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23807,cg21962423,-0.000000346,0.00000461,-0.07500474,0.940259319,loss,ns,0.00000423,0.00000783,0.540770756,0.589053942,pos,ns,-0.001674468,0.002293251,-0.730171956,0.465836501,neg,ns,0.331766485,0.0000572,0.0000789,0.725114774,0.468928603,pos,ns,0.069286287,Lhx5,Lhx5_Promoter,5,120427858,120427907,120427906,120427907,50,-,GGGAGGTAATGAATCCGGCGAGCAATTTAAATTTACAATTTGTAACGCCG,Promoter (3-4kb),5,120431699,120441223,9525,1,Lhx5-201,-3841,Lhx5-201,Lhx5,0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,7,14,16873,ENSMUSG00000029595,mapped to different genes,5,120427837,120427983,147,*,147,15,0.544217687,1.381578947,0.102040816,6.81E-12,CpGisland,TRUE,U13,Hc-P
4183,cg25053457,0.0000921,0.0000109,8.422975353,1.39E-15,gain,yes,-0.00001,0.0000186,-0.54068723,0.589111453,neg,ns,0.014353114,0.005444593,2.636214154,0.008805704,pos,ns,2.055235908,-0.000323876,0.000187239,-1.729748042,0.084670655,neg,ns,0.14322092,Igsf9b,Igsf9b_fiveUTR,9,27299444,27299493,27299444,27299445,50,-,CGGTAGTACTATGATTTGGTATGTGGCCACTTTCATAGCAAGTGTGATCG,Promoter (<=1kb),9,27299204,27357546,58343,1,Igsf9b-204,240,Igsf9b-204;Igsf9b-201;Igsf9b-202,Igsf9b;Igsf9b;Igsf9b,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,3,235086,ENSMUSG00000034275,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
22083,cg10123621,-0.0000267,0.0000107,-2.494891526,0.013119668,loss,ns,0.00000985,0.0000182,0.540666204,0.58912593,pos,ns,-0.004941425,0.005334739,-0.926273027,0.355024651,neg,ns,0.449741491,-0.000188025,0.000183461,-1.024874936,0.306221264,neg,ns,0.457923661,Ano3,Ano3_Exon,2,110770998,110771047,110770998,110770999,50,-,CGAGTAGCATTGCTGAAGAAGGTGTCTTTATTATTTATTATGAAGCTGTT,"Exon (Ano3-201/Ano3, exon 9 of 27)",2,110655201,110950923,295723,2,Ano3-201,179876,Ano3-201;Ano3-202,Ano3;Ano3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,228432,ENSMUSG00000074968,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9466,cg14689355.2,0.00000212,0.0000018,1.174943318,0.24091908,gain,ns,0.00000165,0.00000306,0.540659366,0.589130639,pos,ns,0.00179864,0.000895953,2.00751627,0.045562298,pos,ns,1.341394381,-0.0000393,0.0000308,-1.275980662,0.202917553,neg,ns,0.072741624,Acvr2a,Acvr2a_fiveUTR,2,48814452,48814501,48814452,48814453,50,+,CGGAGCTGACAGTGATTTTGACAGTGATTTAAACCCGCTTTTGTTGTTGT,Promoter (<=1kb),2,48814109,48903269,89161,1,Acvr2a-201,343,Acvr2a-201;Gm13489-201,Acvr2a;Gm13489,0;-3897,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,7,10,11480,ENSMUSG00000052155,conserved gene but different region,2,48813661,48814558,898,*,898,142,0.74610245,1.137266444,0.158129176,3.41E-140,CpGisland,TRUE,U1,Pr-A
10556,cg14158827,-0.00000583,0.000015,-0.389390344,0.697254771,loss,ns,-0.0000138,0.0000254,-0.540657263,0.589132087,neg,ns,0.003523116,0.007452974,0.47271275,0.636750765,pos,ns,0.196030525,-0.000327823,0.000256307,-1.27902222,0.201845814,neg,ns,0.401136715,Acsl6,Acsl6_Exon,11,54336628,54336677,54336676,54336677,50,-,TGTGCTTCATTTGGCTCTTTGCTTCTGCAGATAACCTAGACCCACTGACG,"Exon (Acsl6-211/Acsl6, exon 1 of 10)",11,54303798,54364756,60959,1,Acsl6-204,32830,Acsl6-204;Acsl6-201;Acsl6-209;Acsl6-210;Acsl6-203;Acsl6-206;Acsl6-207;Acsl6-202;Acsl6-208;Acsl6-205;Acsl6-215;Acsl6-211,Acsl6;Acsl6;Acsl6;Acsl6;Acsl6;Acsl6;Acsl6;Acsl6;Acsl6;Acsl6;Acsl6;Acsl6,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,216739,ENSMUSG00000020333,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22465,cg21893671,-0.00000134,0.00000118,-1.130989008,0.258933922,loss,ns,-0.00000108,0.00000201,-0.540469993,0.589261039,neg,ns,-0.000257328,0.000587925,-0.437688073,0.661917205,neg,ns,0.17919633,0.0000136,0.0000202,0.671683985,0.502285132,pos,ns,0.969591011,Git2,Git2_Exon,5,114743769,114743818,114743817,114743818,50,-,TATTCACCTTCATTAGCTGCTGTATCTTGGCCTCAGAAGCCACTAGAGCG,"Exon (Git2-212/Git2, exon 1 of 6)",5,114727407,114773495,46089,2,Git2-204,29677,Git2-204;Git2-215;Git2-212;Git2-203;Git2-201;Git2-202;Git2-214;Git2-205;Git2-216;Git2-213;Git2-208,Git2;Git2;Git2;Git2;Git2;Git2;Git2;Git2;Git2;Git2;Git2,0;0;0;0;0;0;0;0;0;29677;22705,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,26431,ENSMUSG00000041890,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17664,cg09738329,0.0000879,0.0000117,7.49303453,7.09E-13,gain,yes,0.0000108,0.0000199,0.540433142,0.589286416,pos,ns,0.012500956,0.005838979,2.140949028,0.033057822,pos,ns,1.48072576,0.0000794,0.000200802,0.395300983,0.692892651,pos,ns,0.237864848,Zic4,Zic4_fiveUTR,9,91368984,91369033,91368984,91368985,50,-,CGGCTCCAGTTCAAAGCCACATGCACCAACGTGACATATAAGCCATTAAA,5' UTR,9,91362413,91378915,16503,1,Zic4-208,6571,Zic1-201;Zic1-202;Zic4-208;Zic4-206;Zic4-207;Zic4-211;Zic4-204;Zic4-203;Zic4-210;Zic4-209;Zic4-212,Zic1;Zic1;Zic4;Zic4;Zic4;Zic4;Zic4;Zic4;Zic4;Zic4;Zic4,0;0;0;0;0;0;0;0;-1971;0;-2317,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,55,22774,ENSMUSG00000036972,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
3992,cg04197544,-0.0000136,0.00000344,-3.959605963,0.0000932,loss,ns,-0.00000316,0.00000584,-0.540402096,0.589307796,neg,ns,-0.001950741,0.001711593,-1.139722631,0.255281726,neg,ns,0.592980272,-0.0000455,0.0000589,-0.77341391,0.439866813,neg,ns,0.944953305,Gm7847,Gm7847_Intergenic_upstream,18,26263050,26263099,26263098,26263099,50,-,AAAATGCTTAATATTAATAATAAAATGCATTCACTGCAAGCCTCTAGGCG,Distal Intergenic,18,25823581,25824357,777,2,Gm7847-201,-438742,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,22,665916,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20174,cg10129520,-0.0000157,0.00000994,-1.579780217,0.115176985,loss,ns,0.00000912,0.0000169,0.540237998,0.589420808,pos,ns,0.001360245,0.004947591,0.274930663,0.78355265,pos,ns,0.105931816,-0.000125813,0.000170147,-0.739437851,0.460200715,neg,ns,0.748631879,Gm49473,Gm49473_Intergenic_upstream,15,102830673,102830722,102830721,102830722,50,+,GTATTTTTAAATGGCTTTGATTTTATCACCTTGCTTAATGATTTGGCACG,Distal Intergenic,15,102795121,102795371,251,2,Gm49473-201,-35302,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,12,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26062,cg02072088,0.00000668,0.00000513,1.300361383,0.194443045,gain,ns,-0.00000471,0.00000872,-0.54021243,0.589438417,neg,ns,0.003558731,0.002555019,1.392839123,0.164666513,pos,ns,0.783394712,-0.000131247,0.0000879,-1.493703007,0.136270371,neg,ns,0.899718529,Sox5,Sox5_Intergenic_downstream,6,143572070,143572119,143572070,143572071,50,+,CGACAGGCCATAATCCAATCTTCGAATGTTTGGCATGGTGCTAGTTATGA,Distal Intergenic,6,143861441,143947088,85648,2,Sox5-206,374969,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,71,20678,ENSMUSG00000041540,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21191,cg15003065,0.000116017,0.0000132,8.785586619,1.08E-16,gain,yes,-0.0000121,0.0000224,-0.540056985,0.589545481,neg,ns,0.01485619,0.00657244,2.260376799,0.024491309,pos,ns,1.610988,-0.00035364,0.000226026,-1.564599346,0.118697095,neg,ns,0.060290577,Mpped2,Mpped2_Promoter,2,106693906,106693955,106693954,106693955,50,+,AAATGCACACACAAAGCGGAGCCCGGGTGAGAGGTGCCTTGTCAGAGGCG,Promoter (<=1kb),2,106693269,106868356,175088,1,Mpped2-202,637,Mpped2-202;Mpped2-206;Mpped2-201;Mpped2-203;Mpped2-204,Mpped2;Mpped2;Mpped2;Mpped2;Mpped2,0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,2,33,77015,ENSMUSG00000016386,conserved gene and region,2,106693498,106694592,1095,*,1095,121,0.722374429,0.847642505,0.110502283,2.54E-97,CpGisland,TRUE,U3,Pr-B
1355,cg05650111,0.0000361,0.00000457,7.905453576,4.72E-14,gain,yes,-0.00000419,0.00000776,-0.540049734,0.589550475,neg,ns,0.006340308,0.002272298,2.790262136,0.005592793,pos,ns,2.252371242,-0.00010939,0.0000781,-1.399844132,0.162559939,neg,ns,0.07991455,Sox1,Sox1_Exon,8,12430267,12430316,12430315,12430316,50,-,ACTCAGCCGTGCACTCAATGGCTTCACAAAGCTGATTACAAGCTTCAGCG,"Exon (Sox1ot-201/Sox1ot-201, exon 7 of 9)",8,12395295,12400126,4832,1,Sox1-201,35021,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,15,20664,ENSMUSG00000096014,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
27877,cg26861496,-0.00000766,0.00000394,-1.946966144,0.052441673,loss,ns,-0.00000361,0.00000669,-0.540016585,0.589573308,neg,ns,-0.001883741,0.001959099,-0.961534349,0.337032953,neg,ns,0.472327635,0.00000962,0.0000674,0.142715852,0.886607311,pos,ns,0.921379835,Smyd2,Smyd2_Intergenic_upstream,1,189945358,189945407,189945358,189945359,50,-,CGAGGGGTGTTTGATTTATAAATGGAATGTATAATAGGCACGATGCCTTC,Distal Intergenic,1,189880492,189922363,41872,2,Smyd2-201,-23044,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,7,226830,ENSMUSG00000026603,conserved gene and region,1,189945264,189945438,175,*,175,14,0.542857143,1.088888889,0.08,1.18E-09,CpGisland,TRUE,U15,NS
23561,cg11171719,0.0000363,0.00000648,5.599007186,4.75E-08,gain,yes,-0.00000594,0.000011,-0.539829627,0.58970209,neg,ns,-0.002559501,0.003222906,-0.794159194,0.427710268,neg,ns,0.368850324,-0.0000737,0.000110835,-0.665046937,0.506514925,neg,ns,0.073493551,Ctdspl,Ctdspl_fiveUTR,9,118926855,118926904,118926855,118926856,50,+,CGCACCCATGGACGGCCCGGCCATCATCACCCAGGTGACCAACCCCAAGG,Promoter (<=1kb),9,118926862,119040649,113788,1,Ctdspl-202,0,Ctdspl-201;Ctdspl-202;Ctdspl-204,Ctdspl;Ctdspl;Ctdspl,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,7,69274,ENSMUSG00000047409,conserved gene and region,9,118926017,118926873,857,*,857,128,0.780630105,1.034497067,0.149358226,1.72E-122,CpGisland,TRUE,U1,Pr-A
1640,cg00109300,-0.00000332,0.00000122,-2.73164388,0.006663042,loss,ns,-0.00000111,0.00000206,-0.539825003,0.589705275,neg,ns,-0.000354551,0.000604961,-0.586073555,0.558252548,neg,ns,0.253169286,-0.00000737,0.0000208,-0.354255091,0.723388563,neg,ns,0.029126841,Hivep2,Hivep2_Intron,10,13967490,13967539,13967538,13967539,50,-,GGGGAACTGGGTCTGCGCCTTTATGTCTGTTCCCTGAAGTGGGTGGAACG,"Intron (Hivep2-204/Hivep2, intron 1 of 12)",10,13966075,14150589,184515,1,Hivep2-204,1415,Hivep2-204;Hivep2-201;Hivep2-205;Hivep2-203;Hivep2-202;Hivep2-206,Hivep2;Hivep2;Hivep2;Hivep2;Hivep2;Hivep2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,9,15273,ENSMUSG00000015501,conserved gene but different region,10,13966596,13967658,1063,*,1063,102,0.67826905,0.874727722,0.095954845,2.58E-75,CpGisland,TRUE,U1,Pr-A
13138,cg05631094,0.0000642,0.0000118,5.442978586,0.000000107,gain,yes,-0.0000108,0.00002,-0.539818076,0.589710047,neg,ns,0.020326566,0.005872364,3.461394109,0.000612819,pos,ns,3.21266764,-0.000402605,0.00020195,-1.993585426,0.047073376,neg,ns,0.33677021,Dnah2,Dnah2_Promoter,11,69553139,69553188,69553187,69553188,50,+,AGTCCCTGAGGCTGATAGCCAGCGATGGGGCTGTCGGCTCCATCCACGCG,Promoter (4-5kb),11,69510666,69549110,38445,2,Dnah2-203,-4029,Dnah2-202;Dnah2-203;Efnb3-201,Dnah2;Dnah2;Efnb3,0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,7,10,327954,ENSMUSG00000005237,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22793,cg21333217,-0.0000282,0.0000173,-1.631513168,0.103797507,loss,ns,-0.0000159,0.0000294,-0.539438554,0.589971516,neg,ns,0.014676691,0.008615307,1.703559763,0.089465531,pos,ns,1.048344256,-0.000489195,0.00029628,-1.651126919,0.099725292,neg,ns,0.231807302,Plxnd1,Plxnd1_Exon,6,115957528,115957577,115957576,115957577,50,-,TGCCCAGCTGCAGGTCAGAGATGGAGCAGGCGTCGATGAAGGCCTGCGCG,"Exon (Plxnd1-201/Plxnd1, exon 33 of 36)",6,115954811,115995005,40195,2,Plxnd1-201,37428,Plxnd1-201;Plxnd1-205;Plxnd1-202;Plxnd1-204,Plxnd1;Plxnd1;Plxnd1;Plxnd1,0;-690;-1164;2450,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,67784,ENSMUSG00000030123,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21686,cg17502250,-0.00000244,0.000000922,-2.647244598,0.008529803,loss,ns,-0.000000845,0.00000157,-0.539430076,0.589977357,neg,ns,-0.000484371,0.000459103,-1.055037617,0.292229678,neg,ns,0.534275681,-0.0000183,0.0000158,-1.156672243,0.248296844,neg,ns,0.976563628,Cep112,Cep112_Intron,11,108836838,108836887,108836886,108836887,50,+,TTGGTGGGTCCATCATTGTCCTCAATTTAAGAAGCATTATAGAGGTCACG,"Intron (Cep112-213/Cep112, intron 24 of 26)",11,108425192,108860615,435424,1,Cep112-213,411646,Cep112-213;Cep112-201;Cep112-206;Cep112-216;Cep112-208;Cep112-205;Cep112-217;Cep112-203;Cep112-202;Cep112-204;Cep112-207,Cep112;Cep112;Cep112;Cep112;Cep112;Cep112;Cep112;Cep112;Cep112;Cep112;Cep112,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,9,76380,ENSMUSG00000020728,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16162,cg20240519,-0.00000343,0.00000128,-2.667175088,0.008050914,loss,ns,0.00000118,0.00000218,0.539415859,0.589987153,pos,ns,0.002188634,0.000639496,3.4224351,0.000703973,pos,ns,3.152443919,-0.0000164,0.000022,-0.74513722,0.456753322,neg,ns,0.963356196,Zfp407,Zfp407_Intron,18,84542622,84542671,84542670,84542671,50,+,CAAGATTCTTAAATCTCCTTCAAAACATTTCGGCTCAATAAATTCCATCG,"Intron (Zfp407-201/Zfp407, intron 2 of 2)",18,84128027,84558425,430399,2,Zfp407-201,15754,Zfp407-201;Zfp407-202;Zfp407-204,Zfp407;Zfp407;Zfp407,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,32,240476,ENSMUSG00000048410,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16230,cg18816142,-0.0000256,0.0000096,-2.670092525,0.007982881,loss,ns,-0.0000088,0.0000163,-0.539369225,0.590019285,neg,ns,-0.011712997,0.004777681,-2.451607121,0.014773534,neg,ns,1.830515604,0.000141735,0.000164304,0.86263884,0.389002917,pos,ns,0.824256521,Prr5,Prr5_Intergenic_upstream,15,84620127,84620176,84620127,84620128,50,-,CGGGAGGGGAAAGAGCTAAATTCTCACTTAGCAGCAGGATGCTTCTGGGC,Distal Intergenic,15,84669620,84703673,34054,1,Prr5-202,-49493,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,2,109270,ENSMUSG00000036106,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8976,cg00770316,-0.0000882,0.000018,-4.910176901,0.00000147,loss,yes,0.0000165,0.0000305,0.539357488,0.590027373,pos,ns,-0.012468305,0.008945142,-1.393863259,0.164357248,neg,ns,0.78421114,-0.0000889,0.000307623,-0.288945121,0.7728165,neg,ns,0.704115971,Gm13469,Gm13469_Intergenic_upstream,2,46443679,46443728,46443727,46443728,50,+,CTTCATAACTGCTGAAAATTGGAGTCCACATAATTTATTTTCTTTGGTCG,Distal Intergenic,2,46406220,46406569,350,2,Gm13469-201,-37110,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,20,27,383690,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4065,cg22699121,-0.0000774,0.0000119,-6.497089155,3.26E-10,loss,yes,0.0000109,0.0000202,0.539326641,0.590048628,pos,ns,-0.010128427,0.005932361,-1.707317879,0.088764238,neg,ns,1.051761973,0.000186958,0.000204013,0.916402729,0.360168043,pos,ns,0.880375682,Gm45647,Gm45647_Intergenic_upstream,8,26689688,26689737,26689688,26689689,50,-,CGAAAAAATTAACAGTTCTCAAAAATGAAACTCTCACAAAAGGGGTTTTG,Distal Intergenic,8,26780315,26780509,195,1,Gm45647-201,-90627,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,46,62,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3813,cg09706486,0.0000245,0.00000874,2.809722821,0.005273554,gain,ns,0.000008,0.0000148,0.539283699,0.590078218,pos,ns,0.00147888,0.004347986,0.340129802,0.733989131,pos,ns,0.134310371,0.0000396,0.000149527,0.264922853,0.791244957,pos,ns,0.706195435,Celf4,Celf4_Exon,18,25491180,25491229,25491228,25491229,50,-,ACTCCTGGGGCAGATGGTAGATGAACAGGTTACAGCCCTCGGGCCCTGCG,"Exon (Celf4-202/Celf4, exon 11 of 13)",18,25477632,25753983,276352,2,Celf4-202,262754,Celf4-202;Celf4-201;Celf4-203;Celf4-207;Celf4-206;Celf4-208;Celf4-210,Celf4;Celf4;Celf4;Celf4;Celf4;Celf4;Celf4,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,31,59,108013,ENSMUSG00000024268,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8423,cg12433184,0.00000722,0.00000176,4.100211078,0.0000528,gain,ns,0.00000161,0.00000299,0.539121493,0.590189994,pos,ns,0.000882977,0.000876003,1.007960992,0.314259291,pos,ns,0.502711874,0.0000107,0.0000301,0.35489687,0.722908175,pos,ns,0.046609524,Zeb2,Zeb2_fiveUTR,2,45110391,45110440,45110439,45110440,50,-,ACATCTTCAAAATGAGTCATAACTCCTGACCGTATGAGGGAATGCACACG,5' UTR,2,44983632,45117395,133764,2,Zeb2-212,6955,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219;Zeb2-211;Zeb2-210;Zeb2-205;Zeb2-223;Zeb2-217;Zeb2-225;Zeb2-204;Zeb2-206,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;-315;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,15,158,24136,ENSMUSG00000026872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
20628,cg01901658,-0.00000589,0.00000183,-3.213307674,0.001450239,loss,ns,0.00000168,0.00000312,0.539081813,0.590217338,pos,ns,-0.00054806,0.000912921,-0.600336562,0.548720569,neg,ns,0.26064876,-0.00000516,0.0000314,-0.164351305,0.869561703,neg,ns,0.036823357,Pou4f1,Pou4f1_Intergenic_downstream,14,104190586,104190635,104190634,104190635,50,+,TTTTGCAGCAGCTTCCCTAGACCTGCTTGTCATAATGGTTTCTTCAAACG,Distal Intergenic,14,104463973,104465365,1393,2,Pou4f1-202,274730,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,31,18996,ENSMUSG00000048349,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1539,cg27547016,-0.00000631,0.0000092,-0.685951875,0.49325614,loss,ns,-0.00000843,0.0000156,-0.539079689,0.590218803,neg,ns,-0.004830668,0.004581391,-1.054410747,0.292516002,neg,ns,0.533850371,-0.00018904,0.000157554,-1.199842658,0.231116628,neg,ns,0.850594485,Gm11826,Gm11826_Intergenic_downstream,4,13480921,13480970,13480921,13480922,50,+,CGAGATCTAATTTATACCTGTCAGGAGCAATGGGCAGCAGCTAATAGGAA,Downstream (1-2kb),4,13482755,13483192,438,2,Gm11826-201,2222,Gm11826-201,Gm11826,2222,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,6,6,100039988,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9729,cg16695574,-0.0000311,0.0000122,-2.541096072,0.011537722,loss,ns,-0.0000112,0.0000208,-0.539044652,0.590242948,neg,ns,-0.014149493,0.006087322,-2.324419849,0.020748857,neg,ns,1.683005815,0.0000413,0.000209343,0.19722066,0.84378411,pos,ns,0.70766645,Gm7205,Gm7205_Intron,5,50377872,50377921,50377920,50377921,50,+,TTTGGGTCAGTTCATTGTTGAAAGATGGGCTTGCAAGGACCCACCTCTCG,"Intron (Gm7205-201/Gm7205, intron 4 of 4)",5,50217247,50391361,174115,1,Gm7205-201,160625,Gm7205-201,Gm7205,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,2,637307,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9667,cg20268522,0.000085,0.00000791,10.74308338,4.27E-23,gain,yes,-0.00000724,0.0000134,-0.538947497,0.590309906,neg,ns,0.007596477,0.003937123,1.929448654,0.054587618,pos,ns,1.262905854,0.000164092,0.000135397,1.211931829,0.226461389,pos,ns,0.198504343,Ncam1,Ncam1_fiveUTR,9,49798911,49798960,49798911,49798912,50,+,CGGAGAATGAGTGACAGTCCCAGCCTCAGCACACTCGCAACTCGGAGATC,Promoter (<=1kb),9,49502136,49798925,296790,2,Ncam1-204,0,Ncam1-204;Ncam1-202;Ncam1-201;Ncam1-203;Ncam1-207,Ncam1;Ncam1;Ncam1;Ncam1;Ncam1,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,16,17967,ENSMUSG00000039542,mapped to different genes,9,49798889,49799056,168,*,168,16,0.660714286,0.881311475,0.095238095,3.56E-12,CpGisland,TRUE,U3,Pr-B
5278,cg25064060,-0.000024,0.00000447,-5.36800064,0.000000156,loss,yes,-0.00000409,0.00000759,-0.538820638,0.590397339,neg,ns,-0.000786601,0.002224901,-0.3535444,0.723920661,neg,ns,0.140309028,-0.0000915,0.0000765,-1.19620829,0.232529397,neg,ns,0.955947084,Ranbp17,Ranbp17_Intron,11,33297498,33297547,33297546,33297547,50,+,GGCAATAATGACCACATATCTGATTTTGATTCATTAGCTAAAATGTCTCG,"Intron (Ranbp17-202/Ranbp17, intron 19 of 27)",11,33211795,33513746,301952,2,Ranbp17-202,216199,Ranbp17-202;Ranbp17-206;Ranbp17-203,Ranbp17;Ranbp17;Ranbp17,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,31,66011,ENSMUSG00000040594,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21945,cg14549277,-0.00000698,0.00000217,-3.212659285,0.00145341,loss,ns,-0.00000199,0.00000369,-0.538816068,0.590400489,neg,ns,0.002516369,0.001080913,2.32800294,0.020555131,pos,ns,1.68707975,-0.0000626,0.0000372,-1.683386068,0.09330708,neg,ns,0.945931493,Ap1g1,Ap1g1_fiveUTR,8,109802944,109802993,109802992,109802993,50,-,CAGAGGATGCCAGCCCCCATCAGATTGCGGGAGCTGATCCGGACCATCCG,5' UTR,8,109778554,109864204,85651,1,Ap1g1-202,24390,Ap1g1-202;Ap1g1-204;Ap1g1-201,Ap1g1;Ap1g1;Ap1g1,0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,16,11765,ENSMUSG00000031731,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18136,cg06376620,0.0000122,0.00000254,4.777002737,0.00000275,gain,ns,-0.00000233,0.00000432,-0.538763149,0.590436964,neg,ns,0.002508659,0.001266161,1.981311697,0.048439601,pos,ns,1.314799445,-0.0000447,0.0000435,-1.025754444,0.305807073,neg,ns,0.048321319,Tob1,Tob1_Intron,11,94212623,94212672,94212671,94212672,50,-,ATCTTTTCTTATCCCCACCCAGTGCTGATCCAGCAAACGTTTAAAGGTCG,"Intron (Tob1-201/Tob1, intron 1 of 1)",11,94211454,94215495,4042,1,Tob1-201,1169,Tob1-201,Tob1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,3,22057,ENSMUSG00000037573,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
20570,cg06517129,-0.00000095,0.00000135,-0.702855614,0.482673205,loss,ns,0.00000124,0.0000023,0.53863907,0.590522489,pos,ns,0.000756407,0.000672836,1.124207533,0.261794753,pos,ns,0.582039063,-0.0000395,0.0000231,-1.707597672,0.088712205,neg,ns,0.961844982,Gm8748,Gm8748_Intergenic_upstream,8,103686841,103686890,103686841,103686842,50,+,CGCTTAATGAAATGAAGCATGAACTGTTTGAGAAAGCAATTGAAAGTCAT,Distal Intergenic,8,104071149,104071735,587,1,Gm8748-201,-384259,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,6,667656,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3495,cg12559311,-0.000000763,0.00000149,-0.512397081,0.608738007,loss,ns,0.00000136,0.00000253,0.538560396,0.590576721,pos,ns,0.0000426,0.000740991,0.0574412,0.954230751,pos,ns,0.020346592,-0.0000294,0.0000255,-1.153784399,0.249477323,neg,ns,0.965043581,Bcl11a,Bcl11a_threeUTR,11,24168051,24168100,24168051,24168052,50,+,CGCTTTAGTCAATACTTTTTTGTAAATGGCAATGCAGAATATTTTGTTAT,3' UTR,11,24078056,24173194,95139,1,Bcl11a-201,89995,Bcl11a-201;Bcl11a-203;Bcl11a-202;Bcl11a-204;Bcl11a-206,Bcl11a;Bcl11a;Bcl11a;Bcl11a;Bcl11a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,98,14025,ENSMUSG00000000861,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20454,cg16080654,-0.000000255,0.00000233,-0.109382097,0.912970204,loss,ns,-0.00000214,0.00000397,-0.538493369,0.590622927,neg,ns,-0.000723238,0.001162043,-0.622384684,0.534146466,neg,ns,0.27233964,0.000036,0.00004,0.900300639,0.36865913,pos,ns,0.958698502,Nmt1,Nmt1_Exon,11,103058236,103058285,103058284,103058285,50,+,CTGATTGAAGTGAAGTTCTCCCACCTGAGCAGAAATATGACCATGCAGCG,"Exon (Nmt1-201/Nmt1, exon 8 of 12)",11,103028346,103068912,40567,1,Nmt1-201,29890,Nmt1-201;Nmt1-203,Nmt1;Nmt1,0;29651,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,18107,ENSMUSG00000020936,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10943,cg18460092,-0.00000177,0.00000299,-0.592931105,0.553659556,loss,ns,-0.00000273,0.00000507,-0.53840637,0.590682902,neg,ns,0.01196088,0.001485935,8.049396266,1.79E-14,pos,yes,13.74595831,-0.000287769,0.0000511,-5.631353367,4.01E-08,neg,yes,0.954865695,Tcf7l2,Tcf7l2_fiveUTR,19,55894642,55894691,55894642,55894643,50,+,CGATCACAGTCCGCTAAAAAATTTGACACCTCTGATGCAGTTTCTTTGAG,5' UTR,19,55741820,55933229,191410,1,Tcf7l2-213,152822,Tcf7l2-213;Tcf7l2-201;Tcf7l2-208;Tcf7l2-211;Tcf7l2-212;Tcf7l2-206;Tcf7l2-204;Tcf7l2-205;Tcf7l2-222;Tcf7l2-215;Tcf7l2-214;Tcf7l2-207;Tcf7l2-202;Tcf7l2-209;Tcf7l2-210;Tcf7l2-217;Tcf7l2-220;Tcf7l2-218;Tcf7l2-203;Tcf7l2-216;Tcf7l2-219;Tcf7l2-221,Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,88,21416,ENSMUSG00000024985,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15949,cg05869876,-0.00000214,0.00000369,-0.578358918,0.563441741,loss,ns,-0.00000338,0.00000627,-0.538374071,0.590705169,neg,ns,-0.002156181,0.001838115,-1.173039233,0.241680618,neg,ns,0.616758177,0.0000564,0.0000632,0.892505395,0.372814376,pos,ns,0.931651272,Gm50420,Gm50420_Intergenic_downstream,18,83944680,83944729,83944728,83944729,50,-,TAGACCATCCAATACCGCCCAAAGAACATCAGTTATTTTGCATTTTGACG,Distal Intergenic,18,83905796,83905942,147,1,Gm50420-201,38933,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,9,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16557,cg10427841,0.0000129,0.00000546,2.35368668,0.019212307,gain,ns,0.00000499,0.00000928,0.538369679,0.590708197,pos,ns,-0.00048052,0.002717293,-0.176837726,0.859751332,neg,ns,0.065627143,0.00004,0.0000934,0.428126313,0.668856448,pos,ns,0.108301492,Camkmt,Camkmt_Intron,17,85454750,85454799,85454750,85454751,50,-,CGTGTTATCCTCTTAGCCCTACTGTGTTGGAATAGAGCGTAACCAGCTGG,"Intron (Camkmt-201/Camkmt, intron 10 of 10)",17,85090552,85458588,368037,1,Camkmt-201,364198,Camkmt-201,Camkmt,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,41,44,73582,ENSMUSG00000071037,conserved gene and region,17,85454695,85454844,150,*,150,11,0.6,0.818452381,0.073333333,0.000000279,CpGisland,TRUE,U13,Hc-P
19091,cg24304200,0.00000661,0.00000207,3.186642898,0.00158606,gain,ns,0.0000019,0.00000352,0.538251049,0.590789984,pos,ns,0.002717276,0.001031944,2.633162517,0.008883436,pos,ns,2.051419029,-0.0000675,0.0000355,-1.901002999,0.058228864,neg,ns,0.043248626,Ppp1r1b,Ppp1r1b_Promoter,11,98339312,98339361,98339360,98339361,50,-,TCTGCATAAAATTTTAATGGTCTCTCTGGCTGATCCGGGACGGCAGCGCG,Promoter (9-10kb),11,98348404,98357796,9393,1,Ppp1r1b-201,-9092,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,16,16,19049,ENSMUSG00000061718,conserved gene and region,11,98339347,98339463,117,*,117,11,0.717948718,0.783323189,0.094017094,2.09E-08,CpGisland,TRUE,U3,Pr-B
24520,cg17025741,0.0000216,0.00000869,2.490697765,0.01327238,gain,ns,-0.00000794,0.0000148,-0.538229484,0.590804852,neg,ns,0.023554093,0.00432335,5.44811146,0.000000104,pos,ns,6.983456106,-0.001092101,0.00014868,-7.34533254,1.83E-12,neg,yes,0.342907119,Camk2d,Camk2d_Exon,3,126771777,126771826,126771825,126771826,50,-,TTGCATTCAGCAGATCCTGGAGGCTGTGCTACACTGCCATCAGATGGGCG,"Exon (Camk2d-203/Camk2d, exon 6 of 20)",3,126596951,126844913,247963,1,Camk2d-206,174826,Camk2d-206;Camk2d-203;Camk2d-202;Camk2d-216;Camk2d-226;Camk2d-215;Camk2d-210;Camk2d-219;Camk2d-213;Camk2d-209;Camk2d-204;Camk2d-228;Camk2d-221;Camk2d-207;Camk2d-205,Camk2d;Camk2d;Camk2d;Camk2d;Camk2d;Camk2d;Camk2d;Camk2d;Camk2d;Camk2d;Camk2d;Camk2d;Camk2d;Camk2d;Camk2d,0;0;0;0;0;174768;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,4,108058,ENSMUSG00000053819,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11705,cg14433960,0.000114879,0.0000131,8.754692213,1.35E-16,gain,yes,0.000012,0.0000223,0.538176156,0.590841621,pos,ns,0.01949463,0.006530979,2.984947646,0.003062006,pos,ns,2.513993986,-0.000456248,0.0002246,-2.031383914,0.043068842,neg,ns,0.387867285,4933412A08Rik,4933412A08Rik_Exon,19,60160197,60160246,60160245,60160246,50,+,GCTCTGTGTTATTCAAAGGCAATTTACACTAATTATTTGAGTCCACAGCG,"Exon (E330013P04Rik-201/E330013P04Rik-201, exon 4 of 5)",19,60226334,60227678,1345,1,4933412A08Rik-201,-66088,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,74445,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4205,cg04051488,-0.0000266,0.00000997,-2.671984109,0.007939048,loss,ns,0.00000912,0.0000169,0.53816825,0.590847072,pos,ns,-0.013463966,0.004963119,-2.712803309,0.00704442,neg,ns,2.152154742,0.000359328,0.000170681,2.105259899,0.03607299,pos,ns,0.809146242,Gm7729,Gm7729_Intergenic_upstream,18,27511365,27511414,27511365,27511366,50,+,CGTTAACTCACCAGCTCGTTAGCCCTCTGCTCGTTAACTACTTAGCTCTG,Distal Intergenic,18,27598644,27599756,1113,1,Gm7729-201,-87230,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,22,665646,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15702,cg09646330,-0.000017,0.00000838,-2.033816434,0.042821349,loss,ns,-0.00000766,0.0000142,-0.538140933,0.590865906,neg,ns,-0.012173779,0.004169376,-2.91980831,0.003759159,neg,ns,2.424909344,0.000245608,0.000143385,1.712934086,0.087724514,pos,ns,0.11083761,Zfp516,Zfp516_Intron,18,82912687,82912736,82912735,82912736,50,+,GTGCTTACAGGAAAAACAGATTACAAGATTAACATCTGTTAACATGATCG,"Intron (Zfp516-203/Zfp516, intron 1 of 1)",18,82910663,82955958,45296,1,Zfp516-203,2024,Zfp516-203;Zfp516-202;Zfp516-206;Zfp516-204;Zfp516-201,Zfp516;Zfp516;Zfp516;Zfp516;Zfp516,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,6,329003,ENSMUSG00000058881,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
24746,cg01825788,-0.000000426,0.00000254,-0.167550595,0.867046089,loss,ns,0.00000232,0.00000432,0.538019291,0.590949781,pos,ns,-0.000167684,0.001264634,-0.132594598,0.894600029,neg,ns,0.048371092,0.0000253,0.0000435,0.581879279,0.5610709,pos,ns,0.95493887,R3hdm1,R3hdm1_Exon,1,128184449,128184498,128184497,128184498,50,+,CATCCAGCAGCCTCTTCCAGGTACAGCTCTCAGCCAGTCTTCTCATGGCG,"Exon (R3hdm1-208/R3hdm1, exon 15 of 16)",1,128103324,128188856,85533,1,R3hdm1-208,81125,R3hdm1-215;R3hdm1-208;R3hdm1-201;R3hdm1-205;R3hdm1-203;R3hdm1-204;R3hdm1-213,R3hdm1;R3hdm1;R3hdm1;R3hdm1;R3hdm1;R3hdm1;R3hdm1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,7,226412,ENSMUSG00000056211,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24437,cg03450592,-0.0000161,0.00000694,-2.315919017,0.021214881,loss,ns,-0.00000634,0.0000118,-0.537841581,0.591072325,neg,ns,-0.001961335,0.003455701,-0.567564951,0.570741208,neg,ns,0.24356077,-0.000127184,0.000118841,-1.070202922,0.285360526,neg,ns,0.918070527,Ntf3,Ntf3_fiveUTR,6,126102462,126102511,126102462,126102463,50,-,CGGAGATAAGCGAGAAATATCACATAAAACAAGATGGACATCACCTTGTT,5' UTR,6,126101412,126164960,63549,2,Ntf3-203,62449,Ntf3-203;Ntf3-202;Ntf3-201,Ntf3;Ntf3;Ntf3,0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,5,18205,ENSMUSG00000049107,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12161,cg25958141,0.0000414,0.00000867,4.770646479,0.00000283,gain,ns,0.00000792,0.0000147,0.537819924,0.59108726,pos,ns,0.004840406,0.004314789,1.121817573,0.262808191,pos,ns,0.580361103,-0.000254134,0.000148385,-1.71266073,0.08777489,neg,ns,0.32644751,Skor1,Skor1_Intergenic_upstream,9,63159015,63159064,63159015,63159016,50,+,CGTTCATTGTGCTGTTATCTGCCAGAGAGGTGGTGACACCACAGCAATTA,Distal Intergenic,9,63138170,63148961,10792,2,Skor1-202,-10054,Map2k5-201,Map2k5,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,15,207667,ENSMUSG00000022245,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9596,cg07658244,-0.000000966,0.000000519,-1.860476869,0.063764856,loss,ns,-0.000000474,0.000000882,-0.537803616,0.591098506,neg,ns,0.0000333,0.000258361,0.128904985,0.897516423,pos,ns,0.046957596,-0.0000159,0.00000889,-1.787538744,0.074827213,neg,ns,0.009827834,Epc2,Epc2_Exon,2,49451892,49451941,49451892,49451893,50,-,CGACTGCGTCTCCATCAACCGGGCCGTGCCCCAGATGCCCACCGGGATGG,Promoter (<=1kb),2,49451486,49551948,100463,1,Epc2-201,406,Epc2-201,Epc2,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,14,227867,ENSMUSG00000069495,conserved gene and region,2,49451467,49451969,503,*,503,63,0.731610338,0.950850662,0.125248509,7.63E-55,CpGisland,TRUE,U1,Pr-A
8671,cg24787338,0.0000276,0.0000046,6.015417099,5.05E-09,gain,yes,-0.0000042,0.00000781,-0.537662437,0.59119587,neg,ns,0.002216614,0.002287048,0.969203196,0.333199377,pos,ns,0.477295819,-0.0000705,0.0000787,-0.896823569,0.370508989,neg,ns,0.060537631,Fermt2,Fermt2_fiveUTR,14,45529540,45529589,45529540,45529541,50,+,CGCGTAGCAGCCATCTGGCATCCTTATCCCGTCCAGAGCCATGGCTCCTT,Promoter (<=1kb),14,45458795,45530118,71324,2,Fermt2-201,529,Fermt2-201;Fermt2-204;Fermt2-203,Fermt2;Fermt2;Fermt2,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,3,218952,ENSMUSG00000037712,conserved gene but different region,14,45529410,45530505,1096,*,1096,142,0.73540146,0.962592776,0.129562044,2.61E-125,CpGisland,TRUE,U1,Pr-A
744,cg02857399,0.0000167,0.0000122,1.369093816,0.171961073,gain,ns,-0.0000111,0.0000207,-0.537448637,0.591343331,neg,ns,-0.005443018,0.00605573,-0.898821108,0.369445558,neg,ns,0.432449551,0.00033451,0.000208256,1.606245962,0.109237979,pos,ns,0.08263016,Rhob,Rhob_Exon,12,8499260,8499309,8499260,8499261,50,-,CGTCGCTGCGCAGGTCTTTTTTGTTGGCCACCAGGATGATGGGCACATTG,Promoter (<=1kb),12,8497661,8500009,2349,2,Rhob-201,700,Rhob-201,Rhob,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,11852,ENSMUSG00000054364,conserved gene and region,12,8499083,8499269,187,*,187,26,0.679144385,1.209452736,0.139037433,3.22E-24,CpGisland,TRUE,U1,Pr-A
18636,cg03260249,0.0000319,0.00000383,8.324953792,2.73E-15,gain,yes,-0.0000035,0.0000065,-0.537436517,0.591351691,neg,ns,0.005850784,0.001905731,3.070098587,0.002329214,pos,ns,2.632790603,-0.0000633,0.0000655,-0.965498949,0.335047547,neg,ns,0.091443399,Hoxb2,Hoxb2_Exon,11,96351881,96351930,96351929,96351930,50,-,CCTTCCCCGCTGTCTTGGAGACATTTCAAACTTCATCAATCAAGGAGTCG,"Exon (Hoxb2-202/Hoxb2, exon 1 of 1)",11,96350525,96353658,3134,1,Hoxb2-202,1356,Hoxb2-202;Hoxb2-201;Hoxb3-202,Hoxb2;Hoxb2;Hoxb3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,3,103889,ENSMUSG00000075588,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15111,cg11085831,0.00000453,0.00000338,1.343079204,0.180228788,gain,ns,0.00000308,0.00000574,0.537370122,0.591397488,pos,ns,0.001969577,0.001680413,1.172078821,0.24206538,pos,ns,0.616067318,-0.00000705,0.0000578,-0.121923647,0.903038484,neg,ns,0.931985429,Zfp827,Zfp827_threeUTR,8,79189889,79189938,79189889,79189890,50,+,CGTCCACACCGGGGAGCGGCCCTTCCACTGTGACCAGTGCAGCTACAGCT,3' UTR,8,79028437,79193743,165307,1,Zfp827-202,161452,Zfp827-202;Zfp827-203;Zfp827-209;Zfp827-206;Zfp827-205;Zfp827-207;Zfp827-204,Zfp827;Zfp827;Zfp827;Zfp827;Zfp827;Zfp827;Zfp827,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,12,28,622675,ENSMUSG00000071064,conserved gene and region,8,79189795,79190007,213,*,213,16,0.61971831,0.797192983,0.075117371,1.49E-10,CpGisland,TRUE,U11,Tr-P
22322,cg06059859,-0.000000402,0.00000225,-0.178453099,0.858483715,loss,ns,0.00000206,0.00000383,0.537266304,0.591469102,pos,ns,0.001184339,0.001121983,1.055576575,0.291983659,pos,ns,0.534641454,0.0000117,0.0000386,0.303070636,0.76203931,pos,ns,0.065826346,Arntl,Arntl_fiveUTR,7,113207518,113207567,113207518,113207519,50,+,CGACATTTAGGGAAGGCAGAAAGTAGGTCAGGGACGGAGGTGCCTGTTTA,Promoter (<=1kb),7,113207526,113314126,106601,1,Arntl-203,0,Arntl-201;Arntl-203;Arntl-204,Arntl;Arntl;Arntl,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,6,11865,ENSMUSG00000055116,conserved gene and region,7,113207255,113208466,1212,*,1212,121,0.691419142,0.844647948,0.099834984,1.89E-91,CpGisland,TRUE,U1,Pr-A
17117,cg19904741,-0.00000142,0.00000538,-0.263734681,0.792159596,loss,ns,0.00000491,0.00000914,0.537206953,0.591510044,pos,ns,0.004922502,0.002678726,1.837628267,0.067074102,pos,ns,1.173445132,-0.000245725,0.0000921,-2.667413193,0.008045342,neg,ns,0.120335987,Syncrip,Syncrip_fiveUTR,9,88480727,88480776,88480775,88480776,50,+,ATTTCCATTAACATGTTCTGTAGCCATGTTTCCAGAGATCTGTTCAAACG,Promoter (<=1kb),9,88452437,88480765,28329,2,Syncrip-211,0,Syncrip-201;Syncrip-210;Syncrip-211;Syncrip-207;Syncrip-208;Syncrip-203;Syncrip-205;Syncrip-209;Syncrip-206;Syncrip-204;Syncrip-212;Syncrip-202,Syncrip;Syncrip;Syncrip;Syncrip;Syncrip;Syncrip;Syncrip;Syncrip;Syncrip;Syncrip;Syncrip;Syncrip,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,1,56403,ENSMUSG00000032423,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
19978,cg06143513,-0.0000097,0.00000741,-1.309843044,0.191218765,loss,ns,0.00000676,0.0000126,0.537176647,0.59153095,pos,ns,0.003707333,0.00368718,1.005465762,0.315456797,pos,ns,0.50106011,-0.000186181,0.000126802,-1.468281024,0.143041828,neg,ns,0.83589065,Wdfy3,Wdfy3_Exon,5,101900033,101900082,101900033,101900034,50,-,CGGCAGCTGATGACAGGCACACTGACCTGCAGGTTCTCAGGCAGCTCACT,"Exon (Wdfy3-201/Wdfy3, exon 33 of 67)",5,101832956,102069921,236966,2,Wdfy3-201,169839,Wdfy3-201;Wdfy3-205;Wdfy3-207,Wdfy3;Wdfy3;Wdfy3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,72145,ENSMUSG00000043940,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26119,cg18149816,-0.00000323,0.00000222,-1.454281901,0.14687987,loss,ns,0.00000203,0.00000377,0.537162673,0.59154059,pos,ns,0.002051837,0.001105924,1.855314849,0.064500393,pos,ns,1.190437641,-0.000109578,0.000038,-2.881144973,0.004238678,neg,ns,0.959743489,Gm2505,Gm2505_Intergenic_downstream,3,143998257,143998306,143998257,143998258,50,-,CGCATACTTATCATGTCAAAATTATTTATGTGGATAGGCCAGGTTGATCT,Distal Intergenic,3,143872995,143873819,825,1,Gm2505-201,125311,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,37,100039938,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3658,cg22972685,0.0000497,0.0000179,2.783704628,0.005704249,gain,ns,0.0000163,0.0000304,0.537134263,0.591560189,pos,ns,0.028515437,0.008891603,3.207007486,0.001481321,pos,ns,2.82935072,-0.000604117,0.000305781,-1.975649037,0.049081122,neg,ns,0.357048311,Erfl,Erfl_Promoter,7,24951307,24951356,24951307,24951308,50,+,CGATGAGACGCATTACGCACTTAATCCGCCTGATTGAATGTTTTGCTTTC,Promoter (6-7kb),7,24927445,24944494,17050,2,Erfl-201,-6813,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,29,36,,NA,mapped to different genes,7,24951274,24951467,194,*,194,18,0.567010309,1.164,0.092783505,1.92E-13,CpGisland,TRUE,U13,Hc-P
24209,cg02581793,0.00000237,0.00000213,1.112135015,0.266941817,gain,ns,0.00000194,0.00000362,0.537104564,0.591580678,pos,ns,-0.00220926,0.001060707,-2.082818387,0.038087193,neg,ns,1.419221033,0.000102076,0.0000365,2.798304617,0.005458796,pos,ns,0.941219182,Zkscan2,Zkscan2_Exon,7,123485236,123485285,123485236,123485237,50,+,CGGTAACTCTTCTGAAGGCTTTTGAACTTGGTTCGGCACTGTTCTGGTGT,"Exon (Zkscan2-201/Zkscan2, exon 6 of 7)",7,123475384,123500449,25066,2,Zkscan2-201,15164,Zkscan2-201;Zkscan2-204;Zkscan2-202,Zkscan2;Zkscan2;Zkscan2,0;-4307;-259,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,210162,ENSMUSG00000030757,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17378,cg02546724,0.00010958,0.00000762,14.38931702,2.61E-36,gain,yes,-0.00000695,0.0000129,-0.536916013,0.591710763,neg,ns,0.016641926,0.003790251,4.390718643,0.0000155,pos,ns,4.809145177,-0.000170268,0.000130346,-1.306275518,0.192427247,neg,ns,0.138515707,Gbx2,Gbx2_Intergenic_upstream,1,89941560,89941609,89941608,89941609,50,+,CCATTAGACAAATAGTATATTTGCCATTCCCGCGTTATCCATCATTTTCG,Distal Intergenic,1,89927956,89931179,3224,2,Gbx2-201,-10381,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,13,14472,ENSMUSG00000034486,conserved gene but different region,1,89941556,89941680,125,*,125,14,0.576,1.489361702,0.112,1.05E-11,CpGisland,TRUE,U13,Hc-P
6378,cg24171637,-0.00001,0.00000412,-2.426001274,0.01583658,loss,ns,-0.00000376,0.000007,-0.536759721,0.591818601,neg,ns,-0.001256718,0.002050908,-0.612761705,0.540483164,neg,ns,0.26721783,0.0000466,0.0000705,0.661385857,0.508856161,pos,ns,0.917104125,Pknox2,Pknox2_Intron,9,37058535,37058584,37058535,37058536,50,-,CGTGTTTACACAGAGAAAGACAATTTCTAGTTAATGGTGATTACTACCGA,"Intron (Pknox2-207/Pknox2, intron 1 of 10)",9,36890982,37083309,192328,2,Pknox2-207,24725,Pknox2-207;Pknox2-201;Pknox2-202;Pknox2-206;Pknox2-204;Pknox2-205;Pknox2-208;Pknox2-210;Pknox2-209;Pknox2-212;Pknox2-211,Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,47,208076,ENSMUSG00000035934,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14506,cg21221467,-0.0000042,0.00000406,-1.033559709,0.302147666,loss,ns,-0.0000037,0.0000069,-0.536739714,0.591832406,neg,ns,0.0000688,0.002020937,0.034057141,0.972853503,pos,ns,0.011952553,0.00000688,0.0000695,0.09901316,0.921191815,pos,ns,0.917004803,Puf60,Puf60_Intron,15,76074660,76074709,76074708,76074709,50,+,GAAAGACAGTAAAGACAGAGTTCAGTCTGTTGGAGCCGAGCAGTCTCCCG,"Intron (Puf60-202/Puf60, intron 4 of 11)",15,76070182,76080913,10732,2,Puf60-202,6204,Puf60-202;Puf60-204;Puf60-201;Puf60-203;Puf60-207;Puf60-210;Puf60-211;Puf60-208;Puf60-206;Puf60-209;Scrib-201;Scrib-202;Scrib-203,Puf60;Puf60;Puf60;Puf60;Puf60;Puf60;Puf60;Puf60;Puf60;Puf60;Scrib;Scrib;Scrib,0;0;0;-3263;0;0;0;0;2993;2244;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,6,67959,ENSMUSG00000002524,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17668,cg17620221,-0.00000442,0.000000897,-4.922647343,0.00000139,loss,yes,0.000000818,0.00000152,0.536712366,0.591851276,pos,ns,-0.00071455,0.000446429,-1.600590618,0.110486178,neg,ns,0.956692051,0.0000206,0.0000154,1.33909338,0.181521312,pos,ns,0.029488741,Ssbp2,Ssbp2_Exon,13,91370894,91370943,91370894,91370895,50,+,CGTACCCCACACAGGAGAAGTTTGATGTTGACAAACTTCTGGTGGCAGCG,"Exon (A830009L08Rik-201/A830009L08Rik-201, exon 3 of 3)",13,91460283,91688866,228584,1,Ssbp2-209,-89340,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,18,66970,ENSMUSG00000003992,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
4191,cg12780461,-0.0000504,0.0000102,-4.91911323,0.00000141,loss,yes,0.00000934,0.0000174,0.536628639,0.591909051,pos,ns,-0.005555329,0.005096696,-1.089986388,0.276565678,neg,ns,0.558201717,-0.000291274,0.000175275,-1.661811097,0.097561506,neg,ns,0.824967518,Gm7729,Gm7729_Intergenic_upstream,18,27411031,27411080,27411031,27411032,50,-,CGGCTTACATTTTCATTTTATGGGTACCTATGGAGAGCATTATGACACAA,Distal Intergenic,18,27598644,27599756,1113,1,Gm7729-201,-187613,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,22,665646,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22988,cg12934962,-0.000016,0.0000131,-1.219222044,0.223686807,loss,ns,0.000012,0.0000223,0.53651672,0.591986284,pos,ns,0.000638546,0.006533291,0.097737193,0.922204143,pos,ns,0.035172931,-0.000246852,0.000224679,-1.098684364,0.272758326,neg,ns,0.843051134,Gm47912,Gm47912_Intron,13,116575822,116575871,116575870,116575871,50,+,AGAGAGTCAAAGGATGTCCATCACTTCCCTTCTGGTAATGTAATGGGGCG,"Intron (Gm47914-201/Gm47914-201, intron 1 of 1)",13,116361198,116361694,497,2,Gm47912-201,-214128,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,8,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19933,cg10488600,-0.000000891,0.0000018,-0.494734114,0.621138255,loss,ns,-0.00000164,0.00000306,-0.536509537,0.591991242,neg,ns,0.001273273,0.000896348,1.420511333,0.156463862,pos,ns,0.805585956,-0.0000612,0.0000308,-1.985427792,0.047977743,neg,ns,0.955951499,Ogt,Ogt_Exon,X,101655601,101655650,101655649,101655650,50,-,TTCTTTCATTAACCCCTCCTAAGGCATGTTATTTGAAAGCAATTGAGACG,"Exon (Ogt-202/Ogt, exon 6 of 23)",20,101640060,101682940,42881,1,Ogt-202,15541,Ogt-202;Ogt-206;Ogt-201;Ogt-205;Ogt-204;Ogt-207;Ogt-203,Ogt;Ogt;Ogt;Ogt;Ogt;Ogt;Ogt,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,32,33,108155,ENSMUSG00000034160,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20832,cg02512248,-0.0000257,0.00000494,-5.200533718,0.000000362,loss,yes,-0.0000045,0.00000839,-0.536485508,0.592007824,neg,ns,-0.004797796,0.002457765,-1.952097402,0.051826665,neg,ns,1.285446741,0.0001,0.0000845,1.182800764,0.237794463,pos,ns,0.910246725,Ndfip2,Ndfip2_Intergenic_downstream,14,105588748,105588797,105588748,105588749,50,-,CGGCTGGTGTTGATTCTTAATAAGTGACTTCCTAAAGCTGAGGCATGGGG,Distal Intergenic,14,105294546,105308869,14324,1,Ndfip2-203,294251,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,7,76273,ENSMUSG00000053253,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18888,cg26698347,0.0000387,0.00000882,4.388876045,0.0000156,gain,ns,-0.00000803,0.000015,-0.536347379,0.592103152,neg,ns,0.011699139,0.004388196,2.666047344,0.008077352,pos,ns,2.092730988,-0.000160479,0.00015091,-1.063408841,0.288424236,neg,ns,0.530141252,Hdac7,Hdac7_Intron,15,97832389,97832438,97832437,97832438,50,+,ATTACAGCGGATCACAGAAATGTTCCAGTCTGTGAGTCGGAATGCAGCCG,"Intron (Hdac7-203/Hdac7, intron 1 of 23)",15,97792666,97844502,51837,2,Hdac7-203,12064,Hdac7-201;Hdac7-203;Hdac7-202;Hdac7-206;Hdac7-204;Hdac7-205;Hdac7-207;Hdac7-213;Hdac7-212,Hdac7;Hdac7;Hdac7;Hdac7;Hdac7;Hdac7;Hdac7;Hdac7;Hdac7,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,6,56233,ENSMUSG00000022475,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2678,cg02753151,0.000041,0.00000573,7.142328344,6.57E-12,gain,yes,-0.00000522,0.00000974,-0.536342945,0.592106212,neg,ns,-0.001622423,0.002853869,-0.568499202,0.570107632,neg,ns,0.244043145,0.000225562,0.0000981,2.298268117,0.022211866,pos,ns,0.699344901,Slc44a2,Slc44a2_Exon,9,21353023,21353072,21353023,21353024,50,+,CGGCTCTCAGGAGCGACCCTACTTCATGTCGCCCGAGCTGAGAGACATCC,"Exon (Slc44a2-205/Slc44a2, exon 6 of 7)",9,21320698,21355028,34331,1,Slc44a2-210,32325,Slc44a2-210;Slc44a2-207;Slc44a2-201;Slc44a2-202;Slc44a2-209;Slc44a2-205;Slc44a2-203,Slc44a2;Slc44a2;Slc44a2;Slc44a2;Slc44a2;Slc44a2;Slc44a2,0;0;0;8141;6039;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,68682,ENSMUSG00000057193,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
6495,cg09244589,-0.0000304,0.0000115,-2.642854981,0.008638655,loss,ns,-0.0000105,0.0000196,-0.536307124,0.592130935,neg,ns,-0.00845569,0.005734033,-1.474649713,0.141321568,neg,ns,0.849791554,-0.000146282,0.000197193,-0.741823097,0.458756168,neg,ns,0.767122743,Zfp536,Zfp536_Intron,7,37515216,37515265,37515264,37515265,50,-,TAGTTACACTGCTGAGGCTTGCATTCTATAGATTGCTAGAAAGTAATTCG,"Intron (Zfp536-211/Zfp536, intron 1 of 3)",7,37318024,37568390,250367,2,Zfp536-211,53125,Zfp536-211;Zfp536-202;Zfp536-201;Zfp536-203;Zfp536-206,Zfp536;Zfp536;Zfp536;Zfp536;Zfp536,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,73,112,243937,ENSMUSG00000043456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5480,cg09166611,0.00000209,0.00000105,1.986165338,0.047895379,gain,ns,-0.000000957,0.00000178,-0.536270992,0.592155873,neg,ns,0.00051278,0.00052261,0.981190639,0.327263864,pos,ns,0.485101946,-0.0000114,0.000018,-0.632514464,0.527517008,neg,ns,0.977239456,Dnajc19,Dnajc19_Exon,3,34065018,34065067,34065018,34065019,50,+,CGTCGCTTCAGGGGTCAGGCAGAAGATAGACAGCCAGGTAACTTGAGTGG,"Exon (Fxr1-201/Fxr1, exon 15 of 17)",3,34056020,34081312,25293,2,Dnajc19-201,16245,Dnajc19-201;Fxr1-201;Fxr1-202;Fxr1-207;Fxr1-206;Fxr1-204;Fxr1-208,Dnajc19;Fxr1;Fxr1;Fxr1;Fxr1;Fxr1;Fxr1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,8,67713,ENSMUSG00000027679,mapped to different genes,3,34064997,34065022,26,*,26,6,0.692307692,1.925925926,0.230769231,0.000000406,CpGisland,TRUE,U10,Tr-S
6668,cg26639842,0.000246251,0.0000207,11.89697483,3.88E-27,gain,yes,-0.0000189,0.0000352,-0.536229953,0.592184197,neg,ns,0.065006838,0.01030192,6.310167106,9.62E-10,pos,ns,9.016957826,-0.002386756,0.000354282,-6.736879543,7.88E-11,neg,yes,0.591304412,Uri1,Uri1_Intron,7,37970865,37970914,37970865,37970866,50,+,CGGCAGCAAATTGGACCGGTTGCCATGGCAAATCTGAGCCCTTAAGTCAT,"Intron (Uri1-201/Uri1, intron 4 of 10)",7,37959992,38019542,59551,2,Uri1-201,48628,Uri1-201;Uri1-204;Uri1-206;Uri1-207;Uri1-205,Uri1;Uri1;Uri1;Uri1;Uri1,0;-1237;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,27,19777,ENSMUSG00000030421,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12359,cg22880373,-0.0000136,0.00000427,-3.182688843,0.001607174,loss,ns,-0.00000389,0.00000726,-0.53616202,0.592231086,neg,ns,-0.003986885,0.002125828,-1.875450756,0.061670517,neg,ns,1.20992241,-0.0000296,0.0000731,-0.405123778,0.685665954,neg,ns,0.062674154,Smad6,Smad6_fiveUTR,9,64022022,64022071,64022022,64022023,50,-,CGCGGAGTCATTGGCTGCCTCCCATCATATGCCAGTCTAGACACTTTGGC,Promoter (<=1kb),9,63953076,64022059,68984,2,Smad6-201,0,Smad6-201;Smad6-203,Smad6;Smad6,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,9,19,17130,ENSMUSG00000036867,conserved gene and region,9,64021777,64022025,249,*,249,28,0.710843374,0.91833509,0.112449799,3.74E-23,CpGisland,TRUE,NA,NRS
19512,cg17481647,-0.0000411,0.00000572,-7.193856178,4.76E-12,loss,yes,0.00000521,0.00000971,0.53611153,0.592265936,pos,ns,-0.001248611,0.002845034,-0.438873886,0.661058641,neg,ns,0.179760014,-0.000085,0.0000978,-0.868482704,0.385801987,neg,ns,0.879007519,Gm12683,Gm12683_Intergenic_downstream,4,99503255,99503304,99503255,99503256,50,+,CGAGCCTTGTTTATGAACCTACATTTATTAAGTGAAAGTATTTGGAAACT,Distal Intergenic,4,99520052,99520466,415,2,Gm12683-201,17162,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,3,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13916,cg23257821,0.0000612,0.000011,5.547419487,6.22E-08,gain,yes,0.00001,0.0000187,0.535979318,0.592357199,pos,ns,0.00703534,0.005490607,1.281341079,0.201031519,pos,ns,0.696735846,-0.000012,0.000188822,-0.063745774,0.949213741,neg,ns,0.43377352,Slc38a6,Slc38a6_Intron,12,73367833,73367882,73367881,73367882,50,+,TTCAAATTTAAGGCTCATTTACACATGATGTCACACACGCATTGTCAGCG,"Intron (D830013O20Rik-201/D830013O20Rik-201, intron 1 of 2)",12,73344367,73351865,7499,1,Slc38a6-207,23466,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,7,625098,ENSMUSG00000044712,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8808,cg03452756,-0.00000724,0.00000373,-1.943732459,0.052832388,loss,ns,-0.00000339,0.00000633,-0.535885016,0.592422297,neg,ns,0.001989416,0.001854532,1.072731992,0.284225739,pos,ns,0.546336595,-0.000110059,0.0000638,-1.725679147,0.085401632,neg,ns,0.942697207,Sorbs2,Sorbs2_Exon,8,45783577,45783626,45783625,45783626,50,-,AAAATGAGCCCTGGTATAAATTCTTTTCAGAACTGGAGTTTGGACGCCCG,"Exon (Sorbs2-201/Sorbs2, exon 14 of 26)",8,45507788,45827906,320119,1,Sorbs2-201,275789,Sorbs2-201;Sorbs2-218;Sorbs2-209;Sorbs2-202;Sorbs2-231;Sorbs2-215;Sorbs2-228;Sorbs2-220;Sorbs2-234;Sorbs2-207;Sorbs2-204;Sorbs2-211;Sorbs2-221;Sorbs2-229;Sorbs2-225;Sorbs2-236,Sorbs2;Sorbs2;Sorbs2;Sorbs2;Sorbs2;Sorbs2;Sorbs2;Sorbs2;Sorbs2;Sorbs2;Sorbs2;Sorbs2;Sorbs2;Sorbs2;Sorbs2;Sorbs2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;-1116,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,4,234214,ENSMUSG00000031626,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13739,cg06455780,-0.0000102,0.00000377,-2.706499345,0.007176359,loss,ns,0.00000343,0.0000064,0.535878598,0.592426728,pos,ns,-0.001956285,0.001875271,-1.043201176,0.297667956,neg,ns,0.526267914,0.0000367,0.0000645,0.568659272,0.569999112,pos,ns,0.951714043,Gm4052,Gm4052_Intergenic_upstream,13,72305526,72305575,72305574,72305575,50,+,CAAGTAAGTGTATTACATAAAAATCTATACAGGATATTAAAACAACACCG,Distal Intergenic,13,72350221,72350671,451,1,Gm4052-201,-44646,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,16,16,100042828,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22952,cg16688385,-0.0000362,0.00000793,-4.569935801,0.00000705,loss,ns,-0.00000722,0.0000135,-0.535864153,0.592436699,neg,ns,-0.000908021,0.003947315,-0.230035073,0.818216232,neg,ns,0.087131909,-0.000298947,0.000135748,-2.202220789,0.028385731,neg,ns,0.901862562,Gm13991,Gm13991_Intergenic_downstream,2,116324005,116324054,116324053,116324054,50,+,GCCACATTGACAGATGAAAACTCCTTCTAAAAATGTCATTTGAGTGCTCG,Distal Intergenic,2,116527843,116528490,648,2,Gm13991-201,204436,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,14,20,433464,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9527,cg11653789,-0.00000652,0.00000143,-4.546526739,0.00000783,loss,ns,-0.00000131,0.00000244,-0.535856193,0.592442195,neg,ns,-0.000689414,0.000713832,-0.965793996,0.334900096,neg,ns,0.475084729,0.00000044,0.0000245,0.017938811,0.985699207,pos,ns,0.047786757,Naa30,Naa30_fiveUTR,14,49172607,49172656,49172607,49172608,50,+,CGCTTCTAGGATGGCGGAGGTACCGCCTGGGCCTAGCAGCCTCCTCCCAC,Promoter (<=1kb),14,49172226,49190885,18660,1,Naa30-205,381,Naa30-205;Naa30-201;Naa30-203,Naa30;Naa30;Naa30,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,7,70646,ENSMUSG00000036282,conserved gene but different region,14,49171998,49173272,1275,*,1275,156,0.736470588,0.909781177,0.122352941,4.33E-133,CpGisland,TRUE,U1,Pr-A
26421,cg04086827,-0.00000229,0.00000533,-0.429965401,0.667519536,loss,ns,0.00000485,0.00000905,0.535847349,0.5924483,pos,ns,0.010317183,0.002651912,3.890470021,0.000122478,pos,ns,3.911940201,-0.000551145,0.0000912,-6.043316073,4.33E-09,neg,yes,0.851445175,Pan3,Pan3_threeUTR,5,147536422,147536471,147536470,147536471,50,+,GGAAAAGTTGTGTTGGCTTTGGCTTGCAACTCTTTGGCAGGAATTCAGCG,3' UTR,5,147430161,147548502,118342,1,Pan3-201,106261,Pan3-201;Pan3-209;Pan3-210;Pan3-216;Pan3-208;Pan3-202;Pan3-206;Pan3-211;Pan3-212;Pan3-221;Pan3-217;Pan3-213;Pan3-207,Pan3;Pan3;Pan3;Pan3;Pan3;Pan3;Pan3;Pan3;Pan3;Pan3;Pan3;Pan3;Pan3,0;0;0;0;0;0;0;6484;6408;5021;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,6,72587,ENSMUSG00000029647,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2029,cg22316499,-0.0000161,0.00000515,-3.132654959,0.00189778,loss,ns,-0.00000469,0.00000876,-0.535821544,0.592466114,neg,ns,-0.001418396,0.002564976,-0.552986086,0.580671482,neg,ns,0.236069502,-0.000186374,0.0000882,-2.112864415,0.035411485,neg,ns,0.892976106,Gm12015,Gm12015_Intergenic_upstream,11,17450843,17450892,17450891,17450892,50,-,TTTTAATGAGCTTCACCAGTTTGTTACTAATGCCCTGTAGAAATTTGGCG,Distal Intergenic,11,17297577,17298419,843,2,Gm12015-201,-152473,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,6,382486,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20762,cg15447184,0.0000937,0.0000119,7.864188445,6.22E-14,gain,yes,-0.0000109,0.0000203,-0.535791897,0.592486582,neg,ns,0.013861873,0.005933238,2.336308249,0.020112173,pos,ns,1.696541001,-0.000398079,0.000204044,-1.950949584,0.051963708,neg,ns,0.085908473,Rgs7bp,Rgs7bp_fiveUTR,13,105054200,105054249,105054200,105054201,50,+,CGGTGCAGAACTCATGCATACACATCCACCAAGCCGAAGCCGCTGGTGCA,Promoter (<=1kb),13,104945904,105054930,109027,2,Rgs7bp-201,681,Rgs7bp-201,Rgs7bp,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,7,52882,ENSMUSG00000021719,conserved gene but different region,13,105054061,105054769,709,*,709,77,0.682651622,0.937379808,0.108603667,1.56E-61,CpGisland,TRUE,U3,Pr-B
11794,cg13984002,-0.00000282,0.00000169,-1.669858284,0.095956794,loss,ns,-0.00000154,0.00000287,-0.535676769,0.592566065,neg,ns,0.000224013,0.000840287,0.266591254,0.789961132,pos,ns,0.102394277,0.000000254,0.0000289,0.00877757,0.993002248,pos,ns,0.972769474,Mbnl1,Mbnl1_Intron,3,60622092,60622141,60622140,60622141,50,+,TCCATATTGCTACACTCTTCTGTATGTTCGCTTATATGATTTTCCCTCCG,"Intron (Mbnl1-211/Mbnl1, intron 6 of 8)",3,60473079,60628200,155122,1,Mbnl1-211,149013,Mbnl1-216;Mbnl1-211;Mbnl1-201;Mbnl1-202;Mbnl1-203;Mbnl1-218;Mbnl1-219;Mbnl1-214;Mbnl1-207;Mbnl1-205;Mbnl1-212;Mbnl1-215;Mbnl1-223;Mbnl1-213,Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,36,56758,ENSMUSG00000027763,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20126,cg04447017,0.000107968,0.0000129,8.382352382,1.84E-15,gain,yes,-0.0000117,0.0000219,-0.535574474,0.592636693,neg,ns,0.008025387,0.006410686,1.251876428,0.211558633,pos,ns,0.674569247,-0.0000442,0.000220463,-0.200289105,0.841385813,neg,ns,0.166925668,Atp5g2,Atp5g2_Promoter,15,102672427,102672476,102672475,102672476,50,+,GCGGCCAATCCATCTTGCAGGCGGGCGGCAGAGGGATTTATATGGGCCCG,Promoter (<=1kb),15,102665801,102672352,6552,2,Atp5g2-203,-75,Atp5g2-202;Atp5g2-201;Atp5g2-204;Atp5g2-203,Atp5g2;Atp5g2;Atp5g2;Atp5g2,-1300;-4678;-4684;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,10,18,67942,ENSMUSG00000062683,mapped to different genes,15,102672078,102672489,412,*,412,37,0.621359223,0.940117176,0.089805825,1.33E-26,CpGisland,TRUE,U1,Pr-A
2888,cg15792779,-0.00000414,0.00000105,-3.928639359,0.000105362,loss,ns,0.000000958,0.00000179,0.535446737,0.592724891,pos,ns,0.000732678,0.000524125,1.397906481,0.163140583,pos,ns,0.787437991,-0.00000446,0.000018,-0.247412818,0.804752538,neg,ns,0.969794353,Ehbp1,Ehbp1_Intron,11,22017635,22017684,22017635,22017636,50,-,CGTCACTAGAGGAGAATACGGTAAGTACAAAGGATTGATTTAATTACTTA,"Intron (Ehbp1-201/Ehbp1, intron 20 of 23)",11,22005828,22285838,280011,2,Ehbp1-201,268154,Ehbp1-201;Ehbp1-202;Ehbp1-207,Ehbp1;Ehbp1;Ehbp1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,34,45,216565,ENSMUSG00000042302,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3384,cg04202135,0.0000292,0.00000645,4.52906407,0.00000846,gain,ns,-0.00000587,0.000011,-0.535415451,0.592746494,neg,ns,0.005101324,0.003211936,1.588239625,0.113251531,pos,ns,0.945955917,-0.0000297,0.000110458,-0.269040238,0.788077689,neg,ns,0.183346432,Gm11892,Gm11892_Intergenic_upstream,4,23983653,23983702,23983653,23983654,50,-,CGTGAGCTCCTTGACACAAAAGGAAAGGGTATTAAAGATCTAAAGCGAGC,Distal Intergenic,4,24238100,24239301,1202,1,Gm11892-201,-254447,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,16,16,664973,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27892,cg13623418,0.0000716,0.0000133,5.393767128,0.000000137,gain,yes,-0.0000121,0.0000226,-0.535364073,0.592781971,neg,ns,0.042145608,0.006608371,6.37760927,6.53E-10,pos,ns,9.18530007,-0.000343769,0.000227261,-1.512660258,0.131384751,neg,ns,0.796120369,Prox1,Prox1_Intron,1,190148655,190148704,190148703,190148704,50,+,AATACACTGTCCAAATTTCCAGACACTGAGATAAGGACTACAGGCCCCCG,"Intron (Prox1-202/Prox1, intron 3 of 4)",1,190118035,190170714,52680,2,Prox1-202,22010,Prox1-202;Prox1-201;Prox1-203,Prox1;Prox1;Prox1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,59,19130,ENSMUSG00000010175,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5286,cg15344988,-0.00000347,0.0000048,-0.723584886,0.469866263,loss,ns,-0.00000437,0.00000816,-0.535098325,0.592965491,neg,ns,-0.003581139,0.002390147,-1.498292265,0.1350749,neg,ns,0.869425344,0.0000612,0.0000822,0.744475749,0.457152678,pos,ns,0.890895016,Ranbp17,Ranbp17_Intron,11,33301294,33301343,33301342,33301343,50,-,AAGCCTGGAGATTTCCCCTTAATTACTTGTGATTTTATTTGCAAATACCG,"Intron (Ranbp17-202/Ranbp17, intron 19 of 27)",11,33211795,33513746,301952,2,Ranbp17-202,212403,Ranbp17-202;Ranbp17-206;Ranbp17-203;Ranbp17-205,Ranbp17;Ranbp17;Ranbp17;Ranbp17,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,31,66011,ENSMUSG00000040594,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12762,cg05087350,0.000043,0.00000527,8.162725064,8.32E-15,gain,yes,-0.00000479,0.00000896,-0.53508842,0.592972332,neg,ns,0.003985156,0.00262413,1.518657737,0.12986784,pos,ns,0.886498381,0.000165532,0.0000902,1.834281956,0.067570482,pos,ns,0.109813886,Phox2b,Phox2b_Exon,5,67098804,67098853,67098804,67098805,50,+,CGGGTTATACTGGAAGCCACTGGCCTGGCTGCAGGAACTGAAGTCAGCAT,Promoter (<=1kb),5,67094399,67099301,4903,2,Phox2b-201,448,Phox2b-201;Phox2b-202,Phox2b;Phox2b,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,28,18935,ENSMUSG00000012520,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
8748,cg20194570,0.00000282,0.00000307,0.917331536,0.359682049,gain,ns,-0.00000279,0.00000522,-0.53498594,0.593043109,neg,ns,0.001315941,0.001529358,0.860452705,0.390204518,pos,ns,0.408707706,-0.0000523,0.0000526,-0.993614198,0.321185657,neg,ns,0.935938329,Kcnn2,Kcnn2_threeUTR,18,45685613,45685662,45685661,45685662,50,-,TATTTTAGCTTTTATTGTAAAGCCCCTATGGTTCTAATCAGCGTTATCCG,3' UTR,18,45269005,45685883,416879,1,Kcnn2-205,416608,Kcnn2-205;Kcnn2-201;Kcnn2-208;Kcnn2-203;Kcnn2-210,Kcnn2;Kcnn2;Kcnn2;Kcnn2;Kcnn2,0;0;0;0;30360,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,TRUE,FALSE,threeUTR,1,8,140492,ENSMUSG00000054477,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9303,cg11273721,-0.0000015,0.00000114,-1.320807082,0.187539884,loss,ns,-0.00000103,0.00000193,-0.534837459,0.593145664,neg,ns,0.000145744,0.000565614,0.25767349,0.796829871,pos,ns,0.098634394,-0.0000204,0.0000195,-1.047516501,0.295677451,neg,ns,0.033474304,Nr4a3,Nr4a3_fiveUTR,4,48045108,48045157,48045108,48045109,50,+,CGCATTCCAGGCACTCTATGGAGAGGCCGCTAGGGCTCCTGTGGCATAAA,Promoter (<=1kb),4,48045153,48086445,41293,1,Nr4a3-201,0,Nr4a3-201;Nr4a3-204;Nr4a3-203,Nr4a3;Nr4a3;Nr4a3,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,20,18124,ENSMUSG00000028341,mapped to different genes,4,48045031,48045109,79,*,79,9,0.670886076,1.058035714,0.113924051,0.000000116,CpGisland,TRUE,U2,Pr-W
26945,cg22451098,-0.00000342,0.00000197,-1.733080788,0.084075723,loss,ns,-0.00000179,0.00000335,-0.534781536,0.593184292,neg,ns,0.000189424,0.000982772,0.192744322,0.84728542,pos,ns,0.071970267,0.00000289,0.0000338,0.085558054,0.931872975,pos,ns,0.055618879,Ski,Ski_Exon,4,155222421,155222470,155222421,155222422,50,+,CGCCCAGCGAGCTCATGGAGCTCAGGTGGAACTGCTCCAGCGTCTTCTGC,Promoter (<=1kb),4,155154075,155222535,68461,2,Ski-202,65,Ski-202;Ski-201,Ski;Ski,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,8,20481,ENSMUSG00000029050,conserved gene and region,4,155222055,155223570,1516,*,1516,233,0.779683377,1.023683112,0.153693931,4.87E-226,CpGisland,TRUE,U2,Pr-W
13804,cg04428702,-0.0000183,0.0000197,-0.928668991,0.35378318,loss,ns,-0.0000179,0.0000335,-0.534751955,0.593204724,neg,ns,0.00726253,0.00980949,0.740357559,0.459643421,pos,ns,0.337578952,-0.000871755,0.000337348,-2.584144526,0.010219284,neg,ns,0.687141086,Irx2,Irx2_Intergenic_downstream,13,72895160,72895209,72895208,72895209,50,-,TGTGATTTAAATTAATAGCCAGTCCTAAATAACTCCTCAGCTGGTAAACG,Distal Intergenic,13,72632597,72633770,1174,1,Irx2-205,262612,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,3,16372,ENSMUSG00000001504,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3926,cg01712711,-0.00000119,0.00000363,-0.328333182,0.742881422,loss,ns,0.0000033,0.00000617,0.534737222,0.593214901,pos,ns,0.00105682,0.001809008,0.584198398,0.559511708,pos,ns,0.252190821,-0.0000699,0.0000622,-1.123118957,0.262256015,neg,ns,0.921283743,Gm7847,Gm7847_Intergenic_downstream,18,25804797,25804846,25804797,25804798,50,+,CGTTATGGAGCTACAGTAAAATAAATAATACAGATATGGTGTTAAAATAA,Distal Intergenic,18,25823581,25824357,777,2,Gm7847-201,19511,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,22,665916,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19096,cg16575904,0.0000506,0.00000636,7.953570399,3.42E-14,gain,yes,0.00000577,0.0000108,0.534711557,0.59323263,pos,ns,0.012869036,0.003164008,4.067321283,0.0000604,pos,ns,4.219161391,-0.000605866,0.00010881,-5.568108124,5.58E-08,neg,yes,0.196953209,Ppp1r1b,Ppp1r1b_Promoter,11,98342487,98342536,98342535,98342536,50,+,TTTAACTTTAGGGCCTCTTCTTCAGGGAATGGAAGCAGCCGACTGGACCG,Promoter (5-6kb),11,98348404,98357796,9393,1,Ppp1r1b-201,-5868,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,16,16,19049,ENSMUSG00000061718,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
18699,cg26411343,-0.00000696,0.00000878,-0.792844358,0.428474867,loss,ns,-0.00000797,0.0000149,-0.534648076,0.593276481,neg,ns,0.000572464,0.004367843,0.131063245,0.89581029,pos,ns,0.047783953,-0.000102031,0.00015021,-0.679255852,0.497482601,neg,ns,0.785376933,Skap1,Skap1_Intron,11,96746778,96746827,96746778,96746779,50,-,CGAACATCTGTATGATCCAGAGTGGTGCAATTTGGCACTTGGAAACGAGG,"Intron (Skap1-204/Skap1, intron 11 of 12)",11,96464593,96758941,294349,1,Skap1-204,282185,Skap1-204;Skap1-203;Skap1-201,Skap1;Skap1;Skap1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,40,46,78473,ENSMUSG00000057058,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19133,cg21650436,-0.0000449,0.00000674,-6.658155602,1.26E-10,loss,yes,0.00000612,0.0000115,0.534565391,0.5933336,pos,ns,-0.009559308,0.003354618,-2.849596993,0.004670551,neg,ns,2.330631909,0.000166225,0.000115365,1.440859383,0.150633678,pos,ns,0.930889003,Adcy6,Adcy6_threeUTR,15,98592420,98592469,98592420,98592421,50,+,CGACACTCCAGCTGGTAGCCCTTGGCAGCTAGAACCTGGTACAGGTCCGT,3' UTR,15,98589973,98607633,17661,2,Adcy6-201,15164,4930415O20Rik-201;Adcy6-201;Adcy6-202;Adcy6-207;Adcy6-205;Adcy6-206,4930415O20Rik;Adcy6;Adcy6;Adcy6;Adcy6;Adcy6,21416;0;0;0;0;1765,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,3,11512,ENSMUSG00000022994,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3103,cg02518760,0.00000196,0.00000281,0.695502388,0.487261549,gain,ns,-0.00000256,0.00000478,-0.534547303,0.593346096,neg,ns,-0.001581504,0.00140059,-1.129169751,0.259699248,neg,ns,0.585529308,0.0000629,0.0000482,1.305165799,0.192804308,pos,ns,0.942370205,Nol4,Nol4_Exon,18,22769745,22769794,22769793,22769794,50,+,ATCTCAAAACCACTTCTTTTCATCCGCCTGCAGGACTTGAGGTAAGTACG,"Exon (Nol4-202/Nol4, exon 8 of 11)",18,22693181,22850754,157574,2,Nol4-203,80960,Nol4-203;Nol4-202;Nol4-204;Nol4-201;Nol4-208;Nol4-206,Nol4;Nol4;Nol4;Nol4;Nol4;Nol4,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,16,21,319211,ENSMUSG00000041923,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8120,cg11755788,0.0000249,0.00000249,10.01499188,1.22E-20,gain,yes,-0.00000226,0.00000423,-0.534458276,0.5934076,neg,ns,0.001459299,0.001239512,1.177317498,0.239971908,pos,ns,0.619839596,0.0000791,0.0000426,1.855006964,0.064544485,pos,ns,0.079586842,Pax2,Pax2_fiveUTR,19,44756578,44756627,44756578,44756579,50,-,CGAATCACAGAGTGGTGGAATCTATTGCCTTTGTCTGACAAGTCATCCAT,Promoter (<=1kb),19,44756045,44837851,81807,1,Pax2-203,533,Pax2-203;Pax2-201;Pax2-202,Pax2;Pax2;Pax2,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,166,18504,ENSMUSG00000004231,conserved gene but different region,19,44756352,44756579,228,*,228,19,0.649122807,0.89301175,0.083333333,2.80E-13,CpGisland,TRUE,U3,Pr-B
23385,cg11830497,-0.00000225,0.00000215,-1.043030757,0.297746749,loss,ns,-0.00000196,0.00000366,-0.53435108,0.59348166,neg,ns,-0.001734757,0.001072124,-1.618055766,0.106667559,neg,ns,0.971967642,-0.0000356,0.0000369,-0.966865083,0.334365167,neg,ns,0.949744404,Rnft2,Rnft2_Exon,5,118228792,118228841,118228840,118228841,50,-,TGACAGCCAGGATGATCTTGGGCAGGGCCACGATGAGGCACTTGAGGGCG,"Exon (Rnft2-201/Rnft2, exon 8 of 12)",5,118190736,118244861,54126,2,Rnft2-201,16020,Rnft2-201;Rnft2-202;Rnft2-205,Rnft2;Rnft2;Rnft2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,269695,ENSMUSG00000032850,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
212,cg21325073,-0.00000431,0.00000326,-1.324180464,0.186418606,loss,ns,0.00000296,0.00000553,0.534339707,0.593489518,pos,ns,0.000909658,0.001621322,0.561059691,0.575162165,pos,ns,0.24020969,-0.0000277,0.0000558,-0.497068615,0.619493004,neg,ns,0.944054967,Gm21992,Gm21992_Exon,19,4787752,4787801,4787800,4787801,50,-,CCACTGCCTCATAGGACCGGGCAGCACGGCAGCGCTTGTAGTAGGCATCG,"Exon (Rbm4-206/Rbm4, exon 3 of 4)",19,4742913,4811612,68700,2,Gm21992-203,23811,Gm21992-203;Gm21992-206;Gm21992-204;Gm21992-201;Gm21992-205;Gm21992-202;Rbm4-206;Rbm4-203;Rbm4-207;Rbm4-201;Rbm4-204;Rbm4-202;Rbm4-205,Gm21992;Gm21992;Gm21992;Gm21992;Gm21992;Gm21992;Rbm4;Rbm4;Rbm4;Rbm4;Rbm4;Rbm4;Rbm4,0;0;0;0;0;0;0;0;0;0;0;0;6082,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,27,48,102902673,ENSMUSG00000096370,mapped to different genes,19,4787732,4787814,83,*,83,8,0.662650602,0.878306878,0.096385542,0.00000291,CpGisland,TRUE,U10,Tr-S
8535,cg13829084,0.00000399,0.00000339,1.179341237,0.239166628,gain,ns,0.00000307,0.00000575,0.534269038,0.593538345,pos,ns,0.002351622,0.001684761,1.395819914,0.163767607,pos,ns,0.785771998,-0.0000236,0.0000579,-0.406609439,0.684575435,neg,ns,0.091963571,Btrc,Btrc_Intron,19,45302477,45302526,45302525,45302526,50,-,CTCCCGTTTCCACGGATTGACACAGGAGCCTCTTGTTGGCTCCATCCACG,"Intron (Gm28578-211/Gm28578-211, intron 1 of 1)",19,45363734,45507736,144003,1,Btrc-204,-61257,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,63,98,12234,ENSMUSG00000025217,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
14860,cg04214310,0.00000309,0.00000192,1.609838246,0.108450957,gain,ns,-0.00000174,0.00000326,-0.534208296,0.593580313,neg,ns,0.001246087,0.0009557,1.303848236,0.193252697,pos,ns,0.713874437,-0.0000599,0.0000329,-1.822534291,0.069337189,neg,ns,0.954787213,Phf12,Phf12_Exon,11,78023524,78023573,78023524,78023525,50,-,CGGCATCATTGTGAAGACAGAGAATGCCACTGGCCCCAGCTCTTGCCCCC,"Exon (Phf12-202/Phf12, exon 9 of 11)",11,77982754,78026214,43461,1,Phf12-202,40770,Phf12-202;Phf12-201;Phf12-207;Phf12-206;Phf12-208;Phf12-205;Phf12-203;Phf12-204,Phf12;Phf12;Phf12;Phf12;Phf12;Phf12;Phf12;Phf12,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,14,27,268448,ENSMUSG00000037791,conserved gene and region,11,78023412,78023525,114,*,114,10,0.692982456,0.786206897,0.087719298,0.000000223,CpGisland,TRUE,U10,Tr-S
7169,cg27505929,-0.000000333,0.0000028,-0.118720605,0.905573604,loss,ns,0.00000254,0.00000476,0.534183377,0.593597532,pos,ns,-0.001067987,0.001395549,-0.765280949,0.444686489,neg,ns,0.351946065,-0.0000631,0.000048,-1.31458949,0.189619641,neg,ns,0.89186007,Lcor,Lcor_Exon,19,41558753,41558802,41558753,41558754,50,+,CGAGGAATGGATCTTTCTTGGGAGTCTCGCACTGGTGATCAGTACAGCTA,"Exon (Lcor-201/Lcor, exon 8 of 8)",19,41482637,41562261,79625,1,Lcor-201,76116,Lcor-201;Lcor-204;Lcor-206;Lcor-202;Lcor-205,Lcor;Lcor;Lcor;Lcor;Lcor,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,25,212391,ENSMUSG00000025019,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3542,cg08837890,-0.0000928,0.0000185,-5.016377691,0.000000888,loss,yes,0.0000168,0.0000314,0.534167816,0.593608284,pos,ns,0.052946325,0.00920454,5.752196583,2.11E-08,pos,ns,7.675158467,-0.001892339,0.000316543,-5.978133591,6.20E-09,neg,yes,0.496450735,Gm12067,Gm12067_Intron,11,24454843,24454892,24454891,24454892,50,+,CAATCAATAAGATCTGGTCAATAACTGCTTTATTACTGCACTACCACCCG,"Intron (Gm12068-201/Gm12068-201, intron 2 of 3)",11,24552438,24553962,1525,2,Gm12067-201,99070,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,58,100417843,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5835,cg20668713,0.000203503,0.0000841,2.420309252,0.016081876,gain,ns,-0.0000763,0.000142843,-0.534085272,0.59366532,neg,ns,-0.034448374,0.041848222,-0.823174129,0.411041766,neg,ns,0.386114047,0.001468781,0.001439157,1.020584647,0.308247063,pos,ns,0.664074517,Tnks,Tnks_Exon,8,34918460,34918509,34918460,34918461,50,-,CGTGCTGCAGCAGCACTGTGCAGGGAAAGCAGAAACAGTATCTTACCTCG,"Exon (Tnks-201/Tnks, exon 3 of 27)",8,34826460,34965690,139231,2,Tnks-201,47181,Tnks-201;Tnks-206,Tnks;Tnks,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,6,21951,ENSMUSG00000031529,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18736,cg19477942,-0.00000208,0.00000152,-1.370710792,0.171456753,loss,ns,0.00000138,0.00000258,0.534083388,0.593666622,pos,ns,0.000723854,0.000756797,0.9564706,0.339579825,pos,ns,0.46905812,-0.0000269,0.000026,-1.032678147,0.302559503,neg,ns,0.966822965,Dscam,Dscam_Exon,16,97038947,97038996,97038947,97038948,50,-,CGCCTCCACCGAGGAGGGGATAATGCACTTGAAGACCGCAACATTGCCTC,"Exon (Dscam-201/Dscam, exon 3 of 33)",16,96590840,97170752,579913,2,Dscam-201,131756,Dscam-201,Dscam,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,12,13508,ENSMUSG00000050272,conserved gene and region,16,97038886,97039039,154,*,154,10,0.558441558,0.844298246,0.064935065,0.00000352,CpGisland,TRUE,U15,NS
24768,cg17616139,-0.00000669,0.00000424,-1.577920804,0.115603656,loss,ns,-0.00000385,0.00000721,-0.53404618,0.593692333,neg,ns,-0.006236878,0.002111004,-2.954460394,0.003372051,neg,ns,2.47210589,0.0000948,0.0000726,1.306267712,0.192429898,pos,ns,0.893898,Ankrd52,Ankrd52_Exon,10,128389121,128389170,128389169,128389170,50,+,CTGGGAGCTCTGGGTGCCAAGATTGTGAACAGCCGAGATGCCAAAGGACG,"Exon (Ankrd52-201/Ankrd52, exon 23 of 28)",10,128377119,128394006,16888,1,Ankrd52-201,12002,Ankrd52-203;Ankrd52-201;Ankrd52-202,Ankrd52;Ankrd52;Ankrd52,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,12,237615,ENSMUSG00000014498,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17161,cg00077667,-0.00000657,0.00000277,-2.372065954,0.018299278,loss,ns,-0.00000251,0.00000471,-0.534015539,0.593713507,neg,ns,-0.002109178,0.001378519,-1.530031539,0.127028683,neg,ns,0.896098205,0.00000537,0.0000474,0.113208822,0.909938279,pos,ns,0.958039662,Rps6-ps2,Rps6-ps2_Intergenic_downstream,8,88905455,88905504,88905503,88905504,50,+,TAGCAACTCCATTTGATGTGATAGTTTGCTAATAAAACATGAGCATTACG,Distal Intergenic,8,88806391,88807137,747,1,Rps6-ps2-201,99064,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,14,675985,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19540,cg12044936,-0.0000135,0.00000363,-3.728567851,0.000228892,loss,ns,0.00000329,0.00000616,0.533913892,0.59378375,pos,ns,-0.002893277,0.001805844,-1.602174656,0.110135426,neg,ns,0.958072962,0.0000143,0.0000621,0.230167047,0.818113775,pos,ns,0.903417948,Gm14816,Gm14816_Intergenic_downstream,X,99624865,99624914,99624913,99624914,50,-,ATTATGCTTTTATCAGGCTGCTGGGAGTTTCAATAAAATCTTTATGGCCG,Distal Intergenic,20,99687481,99687774,294,2,Gm14816-201,62909,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,108168471,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3045,cg19894585,0.0000532,0.00000969,5.484955963,0.000000086,gain,yes,-0.00000879,0.0000165,-0.533860969,0.593820323,neg,ns,0.000925443,0.004824277,0.191830353,0.848000686,pos,ns,0.071603797,0.00000434,0.000165906,0.026187906,0.979124312,pos,ns,0.173044348,Pou3f2,Pou3f2_Intergenic_downstream,4,22478952,22479001,22479000,22479001,50,+,CAATGTGTACAAACAACTTTATTTAATGTATACTGGTAATCAGCGATGCG,Distal Intergenic,4,22482780,22488366,5587,2,Pou3f2-201,9365,Pou3f2-201,Pou3f2,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,18,18992,ENSMUSG00000095139,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
8182,cg18799594,0.0000107,0.00000367,2.901375261,0.003981229,gain,ns,0.00000333,0.00000624,0.533686134,0.593941154,pos,ns,0.007194177,0.001827029,3.937635901,0.000101672,pos,ns,3.992799989,-0.000192263,0.0000628,-3.059987268,0.002406882,neg,ns,0.059657355,Pax2,Pax2_Intron,19,44834656,44834705,44834656,44834657,50,+,CGCGGTTAGGGATCACTGTAAACAGTCTGGGGTCATCACACAGGAGAAAG,"Intron (Pax2-203/Pax2, intron 8 of 9)",19,44756045,44837851,81807,1,Pax2-203,78611,Pax2-203;Pax2-201,Pax2;Pax2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,35,166,18504,ENSMUSG00000004231,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
16538,cg01454704,0.0000409,0.0000064,6.380059827,6.44E-10,gain,yes,0.00000581,0.0000109,0.533527367,0.59405089,pos,ns,-0.000145245,0.003187803,-0.045562794,0.963688061,neg,ns,0.016063522,0.0000895,0.000109628,0.816377341,0.414911233,pos,ns,0.826660061,Camkmt,Camkmt_Intron,17,85393629,85393678,85393629,85393630,50,+,CGGGTCTTGAGAGACCTTCTAGATTGACTTACTTTCGGATCATATTGATT,"Intron (Camkmt-201/Camkmt, intron 5 of 10)",17,85090552,85458588,368037,1,Camkmt-201,303077,Camkmt-201,Camkmt,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,41,44,73582,ENSMUSG00000071037,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1104,cg00936991,-0.0000252,0.00000568,-4.433075489,0.0000129,loss,ns,0.00000515,0.00000966,0.533458412,0.594098553,pos,ns,-0.006549095,0.002828925,-2.315047539,0.02126317,neg,ns,1.672371989,0.000122481,0.0000973,1.258973018,0.208987278,pos,ns,0.861162516,Gm14515,Gm14515_Intergenic_upstream,X,11585607,11585656,11585607,11585608,50,+,CGAGACACTGACTTCTTAGAGGTTTGCAGTAACAGCTCGCTCGAGCTGGA,Distal Intergenic,20,11601354,11601569,216,1,Gm14515-201,-15698,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,21,28,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26065,cg18045437,-0.0000568,0.0000126,-4.50849695,0.00000927,loss,ns,0.0000114,0.0000214,0.533403762,0.594136329,pos,ns,-0.002372348,0.006274836,-0.378073337,0.705634865,neg,ns,0.151419969,-0.000213933,0.000215791,-0.991390462,0.322268137,neg,ns,0.684698847,Sox5,Sox5_Intron,6,143594921,143594970,143594969,143594970,50,+,AATATTGTTCTCAATGTGGCACCATAGCCCTGGACATGACACCCAGCACG,"Intron (1700060C16Rik-201/1700060C16Rik-201, intron 4 of 4)",6,143861441,143947088,85648,2,Sox5-206,352118,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,71,20678,ENSMUSG00000041540,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7435,cg15836647,0.0000302,0.00000251,12.05557582,1.05E-27,gain,yes,0.00000227,0.00000426,0.533377466,0.594154507,pos,ns,0.003384737,0.001248437,2.711179452,0.007078196,pos,ns,2.150077428,-0.0000243,0.0000429,-0.564958633,0.572510502,neg,ns,0.084816395,Ostm1,Ostm1_Intron,10,42632578,42632627,42632626,42632627,50,+,TTACAGGCACAGAATGGGCAATCCCTTGATCCCCGTCAATTGTCATCCCG,"Intron (Ostm1-202/Ostm1, intron 2 of 5)",10,42583835,42698323,114489,1,Ostm1-202,48743,Ostm1-202;Ostm1-203,Ostm1;Ostm1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,21,22,14628,ENSMUSG00000038280,conserved gene and region,10,42632523,42632647,125,*,125,9,0.528,1.057330827,0.072,0.00000584,CpGisland,TRUE,U3,Pr-B
24700,cg05002708,-0.00000245,0.000000825,-2.971424788,0.003196155,loss,ns,0.000000747,0.0000014,0.533351702,0.594172316,pos,ns,0.0000924,0.000410541,0.225017928,0.822113582,pos,ns,0.085068177,0.0000101,0.0000141,0.718492508,0.472994839,pos,ns,0.031543167,Bcl7c,Bcl7c_Exon,7,127708429,127708478,127708429,127708430,50,+,CGCTCACCATCTCCGGACCTTCTCGATGGTCGCCATCACCTTCTTGATGT,Promoter (<=1kb),7,127666952,127708462,41511,2,Bcl7c-206,0,Bcl7c-202;Bcl7c-205;Bcl7c-206;Bcl7c-207;Bcl7c-201;Bcl7c-204;Bcl7c-203;Ctf1-201;Ctf1-205;Ctf1-204;Ctf1-203,Bcl7c;Bcl7c;Bcl7c;Bcl7c;Bcl7c;Bcl7c;Bcl7c;Ctf1;Ctf1;Ctf1;Ctf1,0;0;0;0;0;-1125;-354;-4258;-4459;-4466;-4822,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,12055,ENSMUSG00000030814,mapped to different genes,7,127708106,127709029,924,*,924,94,0.716450217,0.793807178,0.101731602,4.82E-72,CpGisland,TRUE,U1,Pr-A
1353,cg03038671,0.0000564,0.0000122,4.629548652,0.0000054,gain,ns,-0.000011,0.0000207,-0.533348499,0.594174531,neg,ns,0.006223966,0.006062708,1.026598446,0.305409955,pos,ns,0.515116811,-0.0000978,0.000208496,-0.46885513,0.639502731,neg,ns,0.622208615,Gm11847,Gm11847_Intergenic_downstream,4,12422117,12422166,12422117,12422118,50,-,CGGCAAAAGCAGAAATGCTAAAAGGTCACTTGGAGAGAAACCAGCTGCTC,Distal Intergenic,4,12232833,12233951,1119,1,Gm11847-201,189333,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,8,545592,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18521,cg17406771,0.0000231,0.0000027,8.572634884,4.88E-16,gain,yes,-0.00000244,0.00000458,-0.533326526,0.59418972,neg,ns,0.001357623,0.001342641,1.011158681,0.312729058,pos,ns,0.504831763,0.0000143,0.0000462,0.309858038,0.756877103,pos,ns,0.069417908,Hoxb9,Hoxb9_fiveUTR,11,96271529,96271578,96271577,96271578,50,-,ATAATGTCTGAGAATGTCCATTTCTGGGACGCTTAGCAGCTATTATGTCG,Promoter (<=1kb),11,96271457,96276595,5139,1,Hoxb9-201,72,Hoxb9-201;Hoxb9-202,Hoxb9;Hoxb9,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,22,15417,ENSMUSG00000020875,mapped to different genes,11,96271433,96272051,619,*,619,70,0.675282714,0.992327951,0.113085622,2.33E-57,CpGisland,TRUE,NA,NRS
8563,cg19364918,-0.00000762,0.0000053,-1.438211338,0.151382847,loss,ns,-0.0000048,0.000009,-0.532839439,0.594526478,neg,ns,-0.004441044,0.002638035,-1.683466552,0.093291494,neg,ns,1.030157952,0.000118833,0.0000907,1.309864463,0.191211526,pos,ns,0.882018013,Btrc,Btrc_Exon,19,45338292,45338341,45338292,45338293,50,+,CGATAAGGAGCCTGCTCGTCAGCTGAGTGATTGTATTTTTTTACAGTTCC,"Exon (Gm28578-208/Gm28578-208, exon 1 of 7)",19,45363734,45507736,144003,1,Btrc-204,-25393,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,30,98,12234,ENSMUSG00000025217,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25203,cg06601040,-0.0000246,0.00000347,-7.097404073,8.70E-12,loss,yes,-0.00000314,0.00000589,-0.532667113,0.59464564,neg,ns,0.004322412,0.00172669,2.503293104,0.012818421,pos,ns,1.892165453,-0.0000756,0.0000594,-1.273777991,0.203696293,neg,ns,0.913336923,Arid1a,Arid1a_Exon,4,133691110,133691159,133691110,133691111,50,+,CGATAGAGGTCCAGAGGTTTCCTACCCACAGCAGGCAGATTTGTCATGCC,"Exon (Arid1a-202/Arid1a, exon 11 of 20)",4,133679008,133753611,74604,2,Arid1a-202,62452,Arid1a-202;Arid1a-205;Arid1a-201;Arid1a-203,Arid1a;Arid1a;Arid1a;Arid1a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,13,31,93760,ENSMUSG00000007880,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10730,cg11048344,-0.00000161,0.00000183,-0.879126425,0.38001366,loss,ns,-0.00000165,0.0000031,-0.532598993,0.594692747,neg,ns,0.00027143,0.000909108,0.298567589,0.765470031,pos,ns,0.116071808,-0.0000334,0.0000313,-1.069543976,0.285656698,neg,ns,0.942576053,Zfp462,Zfp462_Exon,4,55016947,55016996,55016947,55016948,50,-,CGGGGGGATACCATTGCAGTCAATGTGACAGAGTCCTGATGTCCATGCAG,"Exon (Zfp462-201/Zfp462, exon 3 of 11)",4,54947976,55083563,135588,1,Zfp462-203,68971,Zfp462-203;Zfp462-201;Zfp462-202,Zfp462;Zfp462;Zfp462,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,23,242466,ENSMUSG00000060206,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13565,cg12887931,-0.00000372,0.00000138,-2.693049963,0.007465325,loss,ns,-0.00000125,0.00000235,-0.532589767,0.594699128,neg,ns,0.0000169,0.000687624,0.024543476,0.980434897,pos,ns,0.008581239,-0.0000045,0.0000236,-0.190087644,0.849364864,neg,ns,0.065707897,Slc25a12,Slc25a12_fiveUTR,2,71367485,71367534,71367533,71367534,50,+,AAAAGCAGCAGCAGAGAGTTGGAGTCACCTTGACCGCCATGCTGTGCTCG,Promoter (<=1kb),2,71274690,71367533,92844,2,Slc25a12-207,0,Slc25a12-206;Slc25a12-207,Slc25a12;Slc25a12,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,3,78830,ENSMUSG00000027010,conserved gene and region,2,71367519,71367773,255,*,255,38,0.721568628,1.147017046,0.149019608,1.30E-36,CpGisland,TRUE,U1,Pr-A
5412,cg03930257,-0.0000037,0.0000033,-1.121633768,0.262886245,loss,ns,-0.00000298,0.0000056,-0.53256363,0.594717202,neg,ns,0.000272228,0.001641435,0.165847694,0.86838492,pos,ns,0.061287727,-0.0000694,0.0000564,-1.229976043,0.219638674,neg,ns,0.941052005,Epb41l4a,Epb41l4a_Exon,18,33854307,33854356,33854307,33854308,50,-,CGGGGAAGCTGAATAGAAAGATCTCGGCTCATTTGCAAAGCTGTCCTGCC,"Exon (Epb41l4a-201/Epb41l4a, exon 13 of 24)",18,33796327,34006919,210593,2,Epb41l4a-201,152563,Epb41l4a-201,Epb41l4a,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,13824,ENSMUSG00000024376,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22475,cg20975101,0.0000031,0.00000853,0.362907171,0.716921546,gain,ns,0.00000772,0.0000145,0.532485874,0.594770977,pos,ns,-0.004508471,0.004247128,-1.061534066,0.289273552,neg,ns,0.538691272,-0.0000281,0.000146058,-0.192234876,0.847684093,neg,ns,0.500088831,Gm13975,Gm13975_Intergenic_downstream,2,114782594,114782643,114782594,114782595,50,+,CGACAAGAAAATCCTTAGTTTCCTGTGCCGGACAAATAGCAGGAAAGGGT,Distal Intergenic,2,114708112,114708893,782,1,Gm13975-201,74482,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,9,100043219,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16674,cg27361367,0.0000015,0.00000464,0.322727021,0.747119544,gain,ns,-0.0000042,0.00000788,-0.532473585,0.594779476,neg,ns,0.009323107,0.00230928,4.037235619,0.0000682,pos,ns,4.166122515,-0.000328858,0.0000794,-4.140960183,0.0000446,neg,ns,0.869184762,Gm11443,Gm11443_Intergenic_downstream,11,85963730,85963779,85963778,85963779,50,+,GAGTCAATTATGGGATACTTCTGATTTGATCCACATGCAAGGGAAATCCG,Distal Intergenic,11,85950495,85950973,479,1,Gm11443-201,13235,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,100861933,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23908,cg17074460,-0.0000068,0.00000247,-2.756530571,0.006187885,loss,ns,-0.00000223,0.00000419,-0.532427476,0.594811365,neg,ns,0.00000876,0.001227455,0.007140242,0.994307552,pos,ns,0.002479262,-0.0000174,0.0000422,-0.412613984,0.680174667,neg,ns,0.936101277,Mettl9,Mettl9_Exon,7,121057288,121057337,121057288,121057289,50,-,CGCTGTGATCAGCCCCTGACTTTGTTAAAAGATATCAGAAGTGTCTTGGA,"Exon (Mettl9-201/Mettl9, exon 4 of 5)",7,121034445,121076835,42391,1,Mettl9-201,22843,Mettl9-201;Mettl9-203,Mettl9;Mettl9,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,59052,ENSMUSG00000030876,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19065,cg15162620,0.0000314,0.00000599,5.242088364,0.000000294,gain,yes,-0.00000541,0.0000102,-0.532328766,0.594879636,neg,ns,-0.000965885,0.002980089,-0.324112793,0.746071214,neg,ns,0.127219716,0.0000518,0.000102485,0.505246921,0.613744431,pos,ns,0.118451892,Neurod2,Neurod2_Intergenic_downstream,11,98317294,98317343,98317342,98317343,50,-,CTCATCACTGTCACCATTCAATCATAGCAGATGGGCTGCAGCTGTGAGCG,Distal Intergenic,11,98325415,98329648,4234,2,Neurod2-201,12354,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,22,18013,ENSMUSG00000038255,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
12010,cg10234371,-0.00000336,0.00000202,-1.664872123,0.096948576,loss,ns,-0.00000183,0.00000343,-0.532287821,0.594907956,neg,ns,-0.000705076,0.00100535,-0.701323809,0.483627087,neg,ns,0.315489383,-0.0000936,0.0000346,-2.706593177,0.007174379,neg,ns,0.016834938,Anp32a,Anp32a_fiveUTR,9,62341377,62341426,62341425,62341426,50,+,GGCTCGAGAACCGAGCGGAGCTGGTTGAGCCTTCAAAGTCCTAAAACGCG,Promoter (<=1kb),9,62341293,62377701,36409,1,Anp32a-207,84,Anp32a-207;Anp32a-201;Anp32a-203;Anp32a-205;Anp32a-210;Anp32a-208;Anp32a-202,Anp32a;Anp32a;Anp32a;Anp32a;Anp32a;Anp32a;Anp32a,0;0;0;0;-1038;-2637;-3373,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,9,11737,ENSMUSG00000032249,mapped to different genes,9,62340767,62341614,848,*,848,72,0.632075472,0.85274934,0.08490566,2.37E-49,CpGisland,TRUE,U1,Pr-A
10740,cg03678731,-0.00000869,0.00000444,-1.958830582,0.051028866,loss,ns,0.00000401,0.00000754,0.532202274,0.594967127,pos,ns,-0.001497498,0.0022087,-0.677999709,0.498277618,neg,ns,0.30252862,0.000102959,0.000076,1.355488178,0.1762488,pos,ns,0.919721017,Zfp462,Zfp462_Intron,4,55077728,55077777,55077776,55077777,50,+,CATTCTGTTGATTTCTTGCCCAAGATAATCCCTGCTAAGGAATTAATGCG,"Intron (Zfp462-203/Zfp462, intron 11 of 12)",4,54947976,55083563,135588,1,Zfp462-203,129752,Zfp462-203;Zfp462-201;Zfp462-202,Zfp462;Zfp462;Zfp462,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,23,242466,ENSMUSG00000060206,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19010,cg10216353,0.0000277,0.00000578,4.795735604,0.00000252,gain,ns,-0.00000522,0.00000982,-0.532143742,0.595007614,neg,ns,-0.001675706,0.002876567,-0.582536899,0.560628554,neg,ns,0.251324787,0.0000728,0.0000989,0.736155682,0.462192629,pos,ns,0.086249818,Ccdc184,Ccdc184_fiveUTR,15,98168301,98168350,98168301,98168302,50,-,CGCTTCTGCCACTCAATGGAGGACGGTCTGCTGGAGATCATGACCAAGGA,5' UTR,15,98167158,98170134,2977,1,Ccdc184-201,1143,Asb8-204;Asb8-203;Ccdc184-201,Asb8;Asb8;Ccdc184,0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,1,239650,ENSMUSG00000029875,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
25707,cg24028501,0.0000021,0.00000817,0.257578693,0.796902973,gain,ns,-0.00000739,0.0000139,-0.532118014,0.59502541,neg,ns,0.00819159,0.004066436,2.014439481,0.044826745,pos,ns,1.348462791,-0.000277009,0.000139844,-1.980836387,0.048493175,neg,ns,0.837273842,Nek7,Nek7_Intron,1,138500259,138500308,138500307,138500308,50,+,ATTCATCTGGTTCATTAGTGCATCTCGATGCTGCCCCTGACAGCTGCTCG,"Intron (Nek7-202/Nek7, intron 8 of 9)",1,138482875,138619749,136875,2,Nek7-202,119441,Nek7-202;Nek7-203;Nek7-201,Nek7;Nek7;Nek7,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,9,59125,ENSMUSG00000026393,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26994,cg03547924,-0.00000972,0.00000658,-1.478435765,0.140306506,loss,ns,0.00000595,0.0000112,0.532038894,0.595080141,pos,ns,-0.007490697,0.003273684,-2.288155251,0.022801332,neg,ns,1.642039785,0.000138272,0.000112582,1.228192972,0.220306197,pos,ns,0.717552426,Gdf5,Gdf5_fiveUTR,2,155945271,155945320,155945271,155945272,50,+,CGTGCACCGTCTCCAGTCAGCAGCTGAAAATAACTCGTTCTTGAAAGGAG,Promoter (<=1kb),2,155941023,155945367,4345,2,Gdf5-201,47,Gdf5-201;Gm15557-201,Gdf5;Gm15557,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,6,14563,ENSMUSG00000038259,conserved gene and region,2,155945217,155945345,129,*,129,10,0.581395349,0.930735931,0.07751938,0.000000711,CpGisland,TRUE,U11,Tr-P
4240,cg03476420,0.00000374,0.00000591,0.632448593,0.527559981,gain,ns,-0.00000534,0.00001,-0.531986953,0.595116072,neg,ns,0.003404007,0.002941612,1.157190902,0.248085245,pos,ns,0.605399064,0.00000184,0.000101162,0.018183605,0.985504079,pos,ns,0.927157282,Rfx3,Rfx3_Exon,19,27837422,27837471,27837470,27837471,50,+,AGAGCTTCTGTGAGTGGACAGACCGTCAGACTTTTGCAGCGTCTCAATCG,"Exon (Rfx3-202/Rfx3, exon 6 of 18)",19,27761721,27982948,221228,2,Rfx3-202,145477,Rfx3-202;Rfx3-201;Rfx3-208;Rfx3-203;Rfx3-204;Rfx3-206;Rfx3-205,Rfx3;Rfx3;Rfx3;Rfx3;Rfx3;Rfx3;Rfx3,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,15,19726,ENSMUSG00000040929,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16978,cg19718644,-0.0000196,0.00000871,-2.245838855,0.025418486,loss,ns,-0.00000787,0.0000148,-0.531704392,0.595311555,neg,ns,0.000586222,0.004335771,0.135205848,0.892536871,pos,ns,0.049373834,-0.000170427,0.000149107,-1.14298825,0.253925408,neg,ns,0.860595023,Zfp423,Zfp423_Intron,8,87745092,87745141,87745092,87745093,50,-,CGGTTTCAAAAAGTCAAATTACCTCTGAGCCATAGCAAGGCTGATAATTT,"Intron (Zfp423-203/Zfp423, intron 3 of 5)",8,87661810,87804439,142630,2,Zfp423-203,59298,Zfp423-203;Zfp423-202;Zfp423-201,Zfp423;Zfp423;Zfp423,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,42,53,94187,ENSMUSG00000045333,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
697,cg20563352,0.0000459,0.00000941,4.880243765,0.0000017,gain,yes,-0.0000085,0.000016,-0.531700555,0.59531421,neg,ns,-0.005250319,0.004684358,-1.120819306,0.263232302,neg,ns,0.579660819,0.000139862,0.000161095,0.868198805,0.385957116,pos,ns,0.74124864,Rbm3,Rbm3_threeUTR,X,8144353,8144402,8144401,8144402,50,+,GGTCAACCATCCACAGGTGGCTTCTCGGCCTCATGCAGGACCAGTCGTCG,3' UTR,20,8138978,8145697,6720,2,Rbm3-201,1295,Rbm3-211;Rbm3-201;Rbm3-205;Rbm3-206;Rbm3-202;Rbm3-204;Rbm3-203;Rbm3-207;Rbm3-209;Rbm3-208;Rbm3-210,Rbm3;Rbm3;Rbm3;Rbm3;Rbm3;Rbm3;Rbm3;Rbm3;Rbm3;Rbm3;Rbm3,-1435;0;0;0;0;0;0;0;0;0;1357,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,2,19652,ENSMUSG00000031167,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
14016,cg12916599,-0.0000308,0.00000655,-4.694097942,0.00000403,loss,ns,0.00000592,0.0000111,0.53159997,0.595383804,pos,ns,-0.008396685,0.003262032,-2.574066174,0.01051525,neg,ns,1.978180413,-0.000130058,0.000112181,-1.159355677,0.247203447,neg,ns,0.911385258,Robo2,Robo2_Intron,16,74235019,74235068,74235067,74235068,50,-,GGATTTCTCCCCCATGATGTTTTTTAGCCTTGAGGCAGATATGACAGGCG,"Intron (Robo2-203/Robo2, intron 2 of 27)",16,73891839,74410989,519151,2,Robo2-203,175921,Robo2-203;Robo2-210;Robo2-202;Robo2-211;Robo2-206,Robo2;Robo2;Robo2;Robo2;Robo2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,11,268902,ENSMUSG00000052516,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20684,cg27323505,0.0000549,0.0000057,9.63207842,2.22E-19,gain,yes,-0.00000515,0.00000968,-0.531529984,0.59543223,neg,ns,0.003194176,0.002837312,1.125775425,0.261131379,pos,ns,0.583140937,0.000166753,0.0000976,1.708972882,0.088456816,pos,ns,0.16870582,Pou4f1,Pou4f1_Exon,14,104465773,104465822,104465821,104465822,50,-,GGTTGCAAAACCACACCCGCACCACGTTCTTTTTGAGGTCCAGTTTCTCG,"Exon (Pou4f1-201/Pou4f1, exon 2 of 3)",14,104461676,104467999,6324,2,Pou4f1-201,2177,Pou4f1-201;Pou4f1-202,Pou4f1;Pou4f1,0;-408,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,31,18996,ENSMUSG00000048349,mapped to different genes,14,104465680,104466880,1201,*,1201,169,0.729392173,1.061175942,0.14071607,3.29E-156,CpGisland,TRUE,U3,Pr-B
8917,cg27618110,0.00000254,0.0000023,1.104939861,0.270042491,gain,ns,0.00000207,0.0000039,0.531400311,0.59552196,pos,ns,-0.000534574,0.001143321,-0.467562214,0.640426197,neg,ns,0.193530912,0.0000319,0.0000393,0.81229803,0.417243971,pos,ns,0.042942109,Helt,Helt_Promoter,8,46295506,46295555,46295554,46295555,50,+,TTTTGACACAAAAAGGCATTATTTCATACTTGAATACGTTTAATCCAACG,Promoter (<=1kb),8,46292039,46294671,2633,2,Helt-201,-835,Helt-201;Helt-202;Helt-203,Helt;Helt;Helt,0;-1517;-2171,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,15,22,234219,ENSMUSG00000047171,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
22755,cg13347187,-0.00000596,0.00000224,-2.657956412,0.00826933,loss,ns,-0.00000202,0.00000381,-0.531199776,0.595660736,neg,ns,-0.003100697,0.001115947,-2.778534714,0.005793534,neg,ns,2.237056413,0.0000502,0.0000384,1.309258524,0.191416383,pos,ns,0.947864767,Dmbx1,Dmbx1_Exon,4,115920675,115920724,115920675,115920676,50,-,CGGTGCTGGGAACCATAACGGGCCTCCAAGATGATGTCTTGAAATGTACA,"Exon (Dmbx1-201/Dmbx1, exon 2 of 4)",4,115915119,115925638,10520,2,Dmbx1-201,4914,Dmbx1-201;Dmbx1-203;Dmbx1-202,Dmbx1;Dmbx1;Dmbx1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,42,140477,ENSMUSG00000028707,conserved gene and region,4,115920644,115920728,85,*,85,9,0.576470588,1.287878788,0.105882353,0.000000223,CpGisland,TRUE,U11,Tr-P
19638,cg21821439,-0.00000451,0.00000248,-1.81785177,0.070051929,loss,ns,0.00000224,0.00000422,0.531190997,0.595666811,pos,ns,0.000487517,0.001234903,0.394781539,0.693275598,pos,ns,0.159094086,-0.0000959,0.0000425,-2.258141162,0.024631945,neg,ns,0.93626073,Gm28267,Gm28267_Intergenic_upstream,9,100210972,100211021,100211020,100211021,50,-,CTCAACCTGATAAACATGGAGGGCTCGTGTATCTCCCAGAATAGTTGGCG,Distal Intergenic,9,100404495,100404759,265,1,Gm28267-201,-193523,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,29,29,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22946,cg12126232,-0.000002,0.00000608,-0.328759006,0.742559827,loss,ns,-0.00000548,0.0000103,-0.531188992,0.595668199,neg,ns,-0.000148069,0.003023736,-0.048968848,0.960975656,neg,ns,0.017287614,0.00000793,0.000103986,0.076300028,0.939229622,pos,ns,0.890382007,Gm13991,Gm13991_Intergenic_downstream,2,116320116,116320165,116320116,116320117,50,-,CGATTAGAGAATAGGCCCCTTTTGATTTTAGAAATCTTTCCTGTGAGGAT,Distal Intergenic,2,116527843,116528490,648,2,Gm13991-201,208374,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,14,20,433464,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15364,cg18411839,0.00000837,0.00000611,1.368649817,0.172099747,gain,ns,0.00000552,0.0000104,0.531075896,0.595746472,pos,ns,-0.000262813,0.003043133,-0.08636277,0.931233796,neg,ns,0.030941271,0.0000836,0.000104653,0.798661869,0.425097942,pos,ns,0.799914082,Gm46388,Gm46388_Intergenic_downstream,13,80515112,80515161,80515112,80515113,50,+,CGGTGATGGTATTAATCATTAAGAGCCCCCAAGTGCTGCTGGGTAATATC,Distal Intergenic,13,80493009,80493484,476,1,Gm46388-201,22103,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,11,108168047,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21917,cg12823329,-0.0000212,0.00000961,-2.203784025,0.028274419,loss,ns,0.00000867,0.0000163,0.531033058,0.595776121,pos,ns,-0.007378926,0.004783671,-1.542523742,0.123966529,neg,ns,0.906695559,0.0000454,0.00016451,0.276074865,0.782674519,pos,ns,0.627406347,Gm9661,Gm9661_Exon,12,109715330,109715379,109715378,109715379,50,-,GGAGAGGTTGTCCGTGTTGTCTTCTCTTTATTTATGATGAAACATACACG,"Exon (Mir494-201/Mir494-201, exon 1 of 1)",12,109827003,109828124,1122,1,Gm9661-201,-111673,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,8,675987,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24240,cg25652461,-0.0000138,0.00000542,-2.550413891,0.011240127,loss,ns,-0.00000488,0.0000092,-0.530896199,0.595870848,neg,ns,-0.003733286,0.002695239,-1.385141067,0.167005254,neg,ns,0.777269866,0.000148966,0.0000927,1.60715518,0.109038353,pos,ns,0.902969556,Gm12902,Gm12902_Intergenic_downstream,4,124087383,124087432,124087431,124087432,50,-,TAACAGCAGAGACACCTTGACTTCAGTTATTTTATACTTAGGACTAAACG,Distal Intergenic,4,123926234,123926555,322,1,Gm12902-201,161198,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,34,34,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12349,cg02166926,-0.00000314,0.00000136,-2.30290953,0.021945812,loss,ns,-0.00000123,0.00000232,-0.530885967,0.59587793,neg,ns,-0.000536628,0.000679181,-0.790110319,0.430067312,neg,ns,0.366463566,0.00000556,0.0000234,0.23824758,0.811846479,pos,ns,0.958208483,Fign,Fign_Intron,2,63981579,63981628,63981627,63981628,50,+,AGTTTCAAATCTGCTTCGTGGAGTGCAGCAAAGCAATCTCCCAGGCAGCG,"Intron (Fign-203/Fign, intron 2 of 2)",2,63971507,64098012,126506,2,Fign-203,116384,Fign-203;Fign-201;Fign-202;Fign-204,Fign;Fign;Fign;Fign,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,84,60344,ENSMUSG00000075324,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3212,cg08330824,-0.00000398,0.00000281,-1.418470791,0.157057883,loss,ns,0.00000253,0.00000477,0.530806378,0.595933021,pos,ns,0.000371915,0.001397578,0.266113613,0.790328615,pos,ns,0.102192293,0.0000133,0.0000481,0.276822181,0.782101133,pos,ns,0.038300469,Xpo1,Xpo1_Promoter,11,23255962,23256011,23256010,23256011,50,-,CTGAAAACTCAACCGAGATGGAATCTCCCAGTCTGAACCGGTTTCAACCG,Promoter (<=1kb),11,23256041,23297597,41557,1,Xpo1-204,-79,Xpo1-201;Xpo1-204;Xpo1-203;Xpo1-206;Xpo1-202;Xpo1-205,Xpo1;Xpo1;Xpo1;Xpo1;Xpo1;Xpo1,0;0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,7,14,103573,ENSMUSG00000020290,conserved gene but different region,11,23255743,23256076,334,*,334,31,0.676646707,0.821746032,0.092814371,7.76E-23,CpGisland,TRUE,U1,Pr-A
27214,cg09351212,-0.00000922,0.00000624,-1.477647327,0.140517425,loss,ns,0.00000562,0.0000106,0.530702096,0.596005208,pos,ns,0.002094234,0.003104834,0.674507524,0.500491398,pos,ns,0.300603382,-0.0000186,0.000106775,-0.173745014,0.86217926,neg,ns,0.851387674,Cdkl5,Cdkl5_Exon,X,160808351,160808400,160808351,160808352,50,-,CGATTTGTTCTGTTATAGGGGTGCCCATTTGGCCCACTTTTGGCACCCAG,"Exon (Cdkl5-205/Cdkl5, exon 17 of 17)",20,160771923,160928488,156566,2,Cdkl5-203,120088,Cdkl5-203;Cdkl5-204;Cdkl5-201;Cdkl5-202;Cdkl5-205,Cdkl5;Cdkl5;Cdkl5;Cdkl5;Cdkl5,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,4,382253,ENSMUSG00000031292,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22207,cg19873077,0.000028,0.00000912,3.06491454,0.002368741,gain,ns,0.00000823,0.0000155,0.530666126,0.596030109,pos,ns,0.008387152,0.004541463,1.846795234,0.065729737,pos,ns,1.182238106,-0.0000125,0.000156181,-0.08005993,0.93624125,neg,ns,0.174306263,Galnt18,Galnt18_Exon,7,111779493,111779542,111779493,111779494,50,+,CGCTCAGGATCACGCAAGTGGACACCAAAGTTTTGGTCTTCCTGGTGCAC,Promoter (<=1kb),7,111471661,111779977,308317,2,Galnt18-201,435,Galnt18-201;Galnt18-202,Galnt18;Galnt18,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,3,233733,ENSMUSG00000038296,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
15066,cg12324159,0.000006,0.00000616,0.974041104,0.330795563,gain,ns,-0.00000556,0.0000105,-0.530551186,0.59610968,neg,ns,0.003811276,0.003068359,1.242121723,0.215130515,pos,ns,0.667297982,-0.000222472,0.000105521,-2.108330205,0.035804645,neg,ns,0.916686674,Setbp1,Setbp1_threeUTR,18,78753832,78753881,78753832,78753833,50,-,CGATTTGTCACACACAGTTTGCATCCATGCAGACTGATAGATTTATAATT,3' UTR,18,78750380,79109391,359012,2,Setbp1-201,355510,Setbp1-201,Setbp1,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,9,240427,ENSMUSG00000024548,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11162,cg15996531,-0.0000265,0.00000712,-3.720153943,0.000236314,loss,ns,0.00000642,0.0000121,0.530438531,0.596187673,pos,ns,-0.008930701,0.003544618,-2.51950994,0.012254296,neg,ns,1.911711629,0.000157585,0.000121899,1.29274954,0.197060358,pos,ns,0.900179456,Marchf3,Marchf3_Exon,18,56807673,56807722,56807673,56807674,50,-,CGGCCTGGGTTTGCGCTCGACTGCAAACCTGAAGTGGCAGAGTTCACAGT,"Exon (Marchf3-202/Marchf3, exon 3 of 5)",18,56761716,56925548,163833,2,Marchf3-202,117826,Marchf3-202;Marchf3-201;Marchf3-203,Marchf3;Marchf3;Marchf3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,7,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27203,cg22204610,0.0000915,0.00000945,9.679028471,1.56E-19,gain,yes,0.00000852,0.0000161,0.530420869,0.596199902,pos,ns,0.014255341,0.004705334,3.029613006,0.002654746,pos,ns,2.575977041,0.0000434,0.000161816,0.268500732,0.788492501,pos,ns,0.40145384,Top1,Top1_Intergenic_upstream,2,160537615,160537664,160537663,160537664,50,+,AATGCTCATATTGAAAAGCCCTGCTTTCTGTCTTCCTCCCTTTCAGGCCG,Distal Intergenic,2,160645888,160722764,76877,1,Top1-201,-108224,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,8,21969,ENSMUSG00000070544,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20790,cg20169815,0.0000326,0.0000054,6.040551233,4.39E-09,gain,yes,0.00000487,0.00000918,0.53036409,0.596239213,pos,ns,-0.000320051,0.002687998,-0.119066548,0.905299753,neg,ns,0.043207598,0.000150667,0.0000924,1.629893248,0.104139687,pos,ns,0.892913618,Them7,Them7_Intron,2,105317702,105317751,105317702,105317703,50,-,CGACAGTCACCTGGAAGCGCTTAGCCCTCAACAGCTGCAGCCCCTTGATT,"Intron (Them7-201/Them7, intron 3 of 3)",2,105224320,105379796,155477,1,Them7-201,93382,Them7-201;Them7-202,Them7;Them7,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,7,74088,ENSMUSG00000055312,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11574,cg05148809,-0.00000278,0.00000104,-2.673493971,0.007904215,loss,ns,-0.000000935,0.00000176,-0.530242765,0.596323218,neg,ns,-0.000263199,0.000516632,-0.509452405,0.610797608,neg,ns,0.214102672,-0.0000167,0.0000178,-0.937403139,0.349280954,neg,ns,0.969854905,Med12l,Med12l_Exon,3,59227688,59227737,59227736,59227737,50,+,ATCTTCAAGTCATGAATGTAACCAGCGCACAATCCTTCTCTATGGAGTCG,"Exon (Med12l-206/Med12l, exon 16 of 44)",3,59006487,59318682,312196,1,Med12l-206,221201,Med12l-206;Med12l-202;Med12l-204;P2ry12-203;P2ry12-201;P2ry12-204,Med12l;Med12l;Med12l;P2ry12;P2ry12;P2ry12,0;0;0;-107;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,9,329650,ENSMUSG00000056476,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23194,cg09011966,0.0000249,0.00000536,4.638957676,0.00000517,gain,ns,0.00000483,0.00000911,0.530193333,0.596357446,pos,ns,-0.002895944,0.002668419,-1.08526603,0.278647083,neg,ns,0.554945499,0.000133441,0.0000918,1.454127887,0.146922531,pos,ns,0.104698191,Gm8624,Gm8624_Intergenic_downstream,11,117415522,117415571,117415522,117415523,50,+,CGATGGAGTTTCCCAGGTTGGCATTAAGACAATATTAAACCTGCAATAAG,Distal Intergenic,11,117420696,117421127,432,2,Gm8624-201,5556,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,667423,ENSMUSG00000083705,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
19012,cg17297996,0.0000468,0.00000574,8.150359947,9.05E-15,gain,yes,0.00000517,0.00000975,0.530154199,0.596384544,pos,ns,0.008345923,0.002856423,2.921809301,0.003735745,pos,ns,2.427622733,-0.000200279,0.0000982,-2.038838099,0.042314249,neg,ns,0.04918908,Dach1,Dach1_Exon,14,98168495,98168544,98168543,98168544,50,+,CAGTCATTGTAGAGGGTCTCGAAGTCCTTCCTGGAGATGAGTTTGCAGCG,Promoter (<=1kb),14,97786853,98169543,382691,2,Dach1-201,999,Dach1-201;Dach1-202;Dach1-203,Dach1;Dach1;Dach1,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,76,13134,ENSMUSG00000055639,conserved gene and region,14,98168225,98168726,502,*,502,39,0.655378486,0.727698484,0.077689243,1.64E-25,CpGisland,TRUE,U3,Pr-B
3096,cg17389888,0.0000992,0.00000933,10.63364047,1.01E-22,gain,yes,-0.0000084,0.0000159,-0.530101423,0.59642109,neg,ns,0.013246024,0.004644996,2.851675753,0.004640906,pos,ns,2.333397188,-0.000146855,0.000159741,-0.919328749,0.35863842,neg,ns,0.127341678,Lhfpl3,Lhfpl3_Exon,5,22746288,22746337,22746288,22746289,50,+,CGGCGTGCTGTGGGCCATCTTCACCATCTGCTTTGCCATCGTCAACGTGG,Promoter (<=1kb),5,22746059,23275597,529539,1,Lhfpl3-202,229,Lhfpl3-202,Lhfpl3,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,11,269629,ENSMUSG00000106379,conserved gene and region,5,22746271,22746758,488,*,488,33,0.610655738,0.733834587,0.067622951,9.76E-20,CpGisland,TRUE,U3,Pr-B
18077,cg17563080,0.000000675,0.00000226,0.298861438,0.765246015,gain,ns,-0.00000203,0.00000384,-0.529822158,0.596614487,neg,ns,0.00083481,0.001124562,0.742342371,0.458442025,pos,ns,0.338715578,-0.0000885,0.0000387,-2.288583225,0.022776112,neg,ns,0.954717212,Pola1,Pola1_Exon,X,93561883,93561932,93561931,93561932,50,-,TCTGGATTTAAGTCTTGCTGTTTCATTAGCTGTTTGACTTGTTTTCTCCG,"Exon (Pola1-201/Pola1, exon 25 of 37)",20,93304767,93632155,327389,2,Pola1-201,70223,Pola1-201,Pola1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,62,18968,ENSMUSG00000006678,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5037,cg11567215,0.000000142,0.00000371,0.038283883,0.969485983,gain,ns,0.00000334,0.0000063,0.52969523,0.596702396,pos,ns,0.003412438,0.0018468,1.847757705,0.065589891,pos,ns,1.183163089,-0.000124998,0.0000635,-1.968128026,0.049944241,neg,ns,0.92038976,Cpeb4,Cpeb4_Exon,11,31931404,31931453,31931452,31931453,50,+,ACCTGTCTGCAGTATTACTGTGAATATTGCTGGGCTGCTATCCATTCTCG,"Exon (Cpeb4-201/Cpeb4, exon 10 of 10)",11,31872211,31931577,59367,1,Cpeb4-201,59193,Cpeb4-201;Cpeb4-202;Cpeb4-203,Cpeb4;Cpeb4;Cpeb4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,10,67579,ENSMUSG00000020300,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21553,cg23189934,0.00000254,0.00000613,0.414662392,0.678675868,gain,ns,-0.00000552,0.0000104,-0.529597429,0.596770137,neg,ns,-0.00555924,0.003051161,-1.822007943,0.069417229,neg,ns,1.158532724,-0.0000186,0.000104929,-0.177567184,0.859178866,neg,ns,0.668682572,Zfhx3,Zfhx3_Intron,8,108264895,108264944,108264895,108264896,50,+,CGGAAGTGAGGAATTAAATTGTTTCTCTGAGTGCTTATGGTCATTGCTGA,"Intron (Zfhx3-204/Zfhx3, intron 2 of 15)",8,107942644,108961630,1018987,1,Zfhx3-204,322251,Zfhx3-204;Zfhx3-207,Zfhx3;Zfhx3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,114,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15470,cg22053627,0.0000431,0.00000527,8.174061954,7.70E-15,gain,yes,0.00000474,0.00000896,0.529576947,0.596784324,pos,ns,0.005593335,0.002623883,2.131701929,0.033817477,pos,ns,1.4708588,0.00000218,0.0000902,0.024116135,0.980775489,pos,ns,0.111350488,Sall3,Sall3_fiveUTR,18,80986676,80986725,80986676,80986677,50,+,CGCATGGGGCTGAGCAATTAGGCTGGTGAATAATGCATGGCCATTAGCGG,Promoter (<=1kb),18,80966376,80986771,20396,2,Sall3-201,46,Sall3-201;Sall3-203,Sall3;Sall3,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,10,20689,ENSMUSG00000024565,conserved gene but different region,18,80985515,80986677,1163,*,1163,120,0.682717111,0.88568473,0.103181427,1.42E-92,CpGisland,TRUE,U3,Pr-B
18877,cg26074576,-0.000013,0.00000256,-5.060958193,0.000000716,loss,yes,0.0000023,0.00000435,0.529493293,0.596842269,pos,ns,0.00136644,0.001275336,1.071434803,0.2848074,pos,ns,0.545448731,-0.0000697,0.0000439,-1.589480434,0.112971265,neg,ns,0.957845613,Prdm15,Prdm15_threeUTR,16,97806092,97806141,97806092,97806093,50,+,CGCATGTGCTCCTTCAGCATGTCCTTCCTGGCAAAGGACTTCCCACACTG,3' UTR,16,97791467,97851227,59761,2,Prdm15-201,45086,Gm49592-201;Prdm15-201;Prdm15-203;Prdm15-210;Prdm15-209,Gm49592;Prdm15;Prdm15;Prdm15;Prdm15,4964;0;0;0;-2647,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,114604,ENSMUSG00000014039,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3325,cg04400734,-0.0000134,0.00000384,-3.489849685,0.000553349,loss,ns,0.00000345,0.00000652,0.529401734,0.596905693,pos,ns,-0.002617304,0.001909416,-1.370735308,0.171449115,neg,ns,0.765864751,0.00010756,0.0000657,1.638017724,0.102432562,pos,ns,0.906260043,Gm11890,Gm11890_Intergenic_downstream,4,23602667,23602716,23602715,23602716,50,+,GGCACAAGCAGCTGCCTGATATTCTAAAGCAGTGAAACATCTGCACGGCG,Distal Intergenic,4,23659928,23660344,417,2,Gm11890-201,57628,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,32,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5993,cg18046528,-0.000022,0.00000693,-3.174108465,0.001653889,loss,ns,0.00000623,0.0000118,0.529368798,0.596928509,pos,ns,-0.005297204,0.003448071,-1.536280506,0.12548959,neg,ns,0.901392301,-0.0000294,0.000118579,-0.248314528,0.804055471,neg,ns,0.840187717,Dab2ip,Dab2ip_threeUTR,2,35729126,35729175,35729174,35729175,50,-,AAAGCCCGCTTGCTCGCTTGCTGGAACACAGGGGCCTTTTAAGTTGAGCG,3' UTR,2,35558266,35730994,172729,1,Dab2ip-205,170860,Dab2ip-205;Dab2ip-206;Dab2ip-209;Dab2ip-211;Dab2ip-202;Dab2ip-207;Dab2ip-203;Dab2ip-201;Dab2ip-208;Dab2ip-204;Dab2ip-213,Dab2ip;Dab2ip;Dab2ip;Dab2ip;Dab2ip;Dab2ip;Dab2ip;Dab2ip;Dab2ip;Dab2ip;Dab2ip,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,TRUE,FALSE,threeUTR,9,12,69601,ENSMUSG00000026883,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
22874,cg09890636,-0.000039,0.0000136,-2.86496329,0.004455429,loss,ns,-0.0000122,0.0000231,-0.529251663,0.597009655,neg,ns,0.010542861,0.006780544,1.554869499,0.120997441,pos,ns,0.917223813,-0.000302987,0.000233182,-1.299356917,0.194786953,neg,ns,0.587605382,Meis2,Meis2_Exon,2,116061527,116061576,116061527,116061528,50,-,CGGGGAGTGCAGGTCGCCAGCTCGCACTTCTCAAAGACCAGAGCTAACAG,"Exon (Meis2-201/Meis2, exon 3 of 12)",2,115863064,116065047,201984,2,Meis2-201,3471,Meis2-201;Meis2-203;Meis2-205;Meis2-206;Meis2-204;Meis2-202;Meis2-213;Meis2-210;Meis2-209;Meis2-212,Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2,0;0;0;0;0;0;0;0;0;-2685,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,15,97,17536,ENSMUSG00000027210,conserved gene but different region,2,116061432,116061626,195,*,195,18,0.615384615,0.976084538,0.092307692,2.11E-13,CpGisland,TRUE,NA,NRS
19524,cg01990488,0.00000318,0.00000707,0.450287044,0.652818218,gain,ns,-0.00000636,0.000012,-0.529176068,0.597062027,neg,ns,-0.00340024,0.003519445,-0.966129625,0.334732414,neg,ns,0.475302231,0.000222614,0.000121033,1.83927399,0.06683109,pos,ns,0.829096282,Gm20696,Gm20696_Intron,6,99567038,99567087,99567086,99567087,50,-,ATTTTTAGGGCCTCCTCCAGAGGCTCAGGCCCAAACAGATGTCCCTCTCG,"Intron (Gm20696-201/Gm20696, intron 3 of 5)",6,99257484,99666797,409314,2,Gm20696-201,99710,Gm20696-201;Gm20696-203,Gm20696;Gm20696,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,5,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20611,cg02057063,-0.00000345,0.00000233,-1.479488768,0.140025195,loss,ns,0.0000021,0.00000396,0.529093983,0.597118898,pos,ns,0.002870276,0.001161234,2.471747078,0.013982316,pos,ns,1.854420891,-0.000106768,0.0000399,-2.673567702,0.007902518,neg,ns,0.097130764,Rsbn1,Rsbn1_Exon,3,103914991,103915040,103915039,103915040,50,-,GGGCCCAAGCATAAGGGCCACAAGGAGCGGCACAAGCACCATCACCACCG,Promoter (<=1kb),3,103914120,103966613,52494,1,Rsbn1-201,871,Ptpn22-204;Ptpn22-201;Ptpn22-202;Rsbn1-201;Rsbn1-202;Rsbn1-203,Ptpn22;Ptpn22;Ptpn22;Rsbn1;Rsbn1;Rsbn1,55196;54714;12952;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,16,229675,ENSMUSG00000044098,conserved gene and region,3,103914092,103915120,1029,*,1029,106,0.664723032,0.937553185,0.103012634,8.89E-82,CpGisland,TRUE,U1,Pr-A
1534,cg21937493,-0.000000606,0.00000649,-0.093360642,0.925677366,loss,ns,0.00000584,0.000011,0.52908692,0.597123792,pos,ns,-0.00801329,0.003232118,-2.479268732,0.013696602,neg,ns,1.863387159,0.000093,0.000111152,0.836643488,0.403437456,pos,ns,0.096116959,Ralyl,Ralyl_fiveUTR,3,13472192,13472241,13472240,13472241,50,+,AGCGTCTCCCAAGTCCAGCAAAATGTGCAACTGGTTTTATGGAAAAAGCG,Promoter (<=1kb),3,13471655,13777103,305449,1,Ralyl-204,537,Ralyl-204;Ralyl-206;Ralyl-207,Ralyl;Ralyl;Ralyl,0;0;-979,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,2,76897,ENSMUSG00000039717,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
8127,cg12815734,0.000000576,0.000000723,0.796535154,0.426330634,gain,ns,0.000000649,0.00000123,0.529039299,0.597156786,pos,ns,0.000274996,0.000359605,0.764716047,0.445022377,pos,ns,0.351618151,-0.0000145,0.0000124,-1.174257867,0.24119303,neg,ns,0.020979107,Pax2,Pax2_Exon,19,44760870,44760919,44760918,44760919,50,+,CCCAGCAGGGCACGGGGGTGTGAACCAGCTCGGGGGGGTGTTTGTGAACG,"Exon (Pax2-203/Pax2, exon 2 of 10)",19,44756045,44837851,81807,1,Pax2-203,4825,Pax2-203;Pax2-201;Pax2-202,Pax2;Pax2;Pax2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,16,166,18504,ENSMUSG00000004231,conserved gene and region,19,44760882,44761007,126,*,126,11,0.706349206,0.715170279,0.087301587,0.000000046,CpGisland,TRUE,U13,Hc-P
26417,cg22032057,-0.00000167,0.00000146,-1.142375449,0.25417954,loss,ns,-0.00000131,0.00000248,-0.528988886,0.597191715,neg,ns,0.000109317,0.000725862,0.150602982,0.880386855,pos,ns,0.05532645,-0.0000361,0.000025,-1.444785558,0.149528139,neg,ns,0.95532974,Pan3,Pan3_Exon,5,147466979,147467028,147466979,147466980,50,-,CGATGGGATCAAAGGCACGAAAAGCAAAGAACCCTATTGGCTGCCTTGCT,"Exon (Pan3-209/Pan3, exon 5 of 19)",5,147430161,147548502,118342,1,Pan3-201,36818,Pan3-201;Pan3-209;Pan3-205;Pan3-214;Pan3-210;Pan3-216;Pan3-218;Pan3-204;Pan3-208,Pan3;Pan3;Pan3;Pan3;Pan3;Pan3;Pan3;Pan3;Pan3,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,6,72587,ENSMUSG00000029647,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19888,cg26214460,-0.00000588,0.00000235,-2.499364039,0.012958528,loss,ns,-0.00000211,0.00000399,-0.528981786,0.597196634,neg,ns,-0.001300755,0.001170393,-1.111383225,0.267264637,neg,ns,0.5730585,0.0000617,0.0000402,1.53309425,0.126272516,pos,ns,0.966244232,Gm43103,Gm43103_Intergenic_downstream,5,101497489,101497538,101497537,101497538,50,-,TTGGTAAAAGTCAGGCGTGTGTGAATCAGAGCCCGGGCCTCGCCACGGCG,Distal Intergenic,5,101505528,101506329,802,2,Gm43103-201,8840,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,10,,NA,mapped to different genes,5,101497423,101497541,119,*,119,9,0.62184874,0.782894737,0.075630252,0.00000392,CpGisland,TRUE,U15,NS
16391,cg25579908,-0.000100993,0.000015,-6.720230338,8.70E-11,loss,yes,0.0000135,0.0000255,0.528976323,0.59720042,pos,ns,0.025085817,0.007479689,3.353858087,0.000895842,pos,ns,3.047768363,-0.000953045,0.000257226,-3.705090469,0.000250172,neg,ns,0.495491635,Dand5,Dand5_Intergenic_downstream,8,84814575,84814624,84814623,84814624,50,+,TCATAATTGTAACTGAGGGTGACAGGGTCACCTTGAGCCCCAGATGCTCG,Downstream (<1kb),8,84815404,84822823,7420,2,Dand5-201,8199,Dand5-201;Dand5-202,Dand5;Dand5,8199;17785,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,3,3,23863,ENSMUSG00000053226,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
11149,cg00177385,-0.00000507,0.00000556,-0.912645556,0.362138188,loss,ns,-0.00000499,0.00000944,-0.528543929,0.597500053,neg,ns,0.002806414,0.002765169,1.014915946,0.310937356,pos,ns,0.507327099,-0.000255502,0.0000951,-2.686840283,0.007602247,neg,ns,0.913873123,Lingo1,Lingo1_Intron,9,56762350,56762399,56762350,56762351,50,+,CGTGCTCTATTATACAGAACAGAAGGAACATTTGGTGGGTTGAATACTTG,"Intron (Lingo1-206/Lingo1, intron 2 of 6)",9,56618475,56796138,177664,2,Lingo1-206,33739,Lingo1-206;Lingo1-205;Lingo1-207;Lingo1-204;Lingo1-208,Lingo1;Lingo1;Lingo1;Lingo1;Lingo1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,25,235402,ENSMUSG00000049556,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3912,cg01156877,0.0000332,0.00000472,7.02578201,1.36E-11,gain,yes,0.00000424,0.00000802,0.528449508,0.597565492,pos,ns,0.006636357,0.002348493,2.825793355,0.005022498,pos,ns,2.299080237,-0.000143031,0.0000808,-1.770968191,0.077548568,neg,ns,0.076485952,Celf4,Celf4_Exon,18,25753426,25753475,25753474,25753475,50,-,TCTCATCCAGGTTGCGGGGGATCTGCCCAATGAACAGCTTGATGGCATCG,Promoter (<=1kb),18,25477632,25753983,276352,2,Celf4-202,508,Celf4-202;Celf4-201;Celf4-203;Celf4-207;Celf4-206;Celf4-209;Celf4-205,Celf4;Celf4;Celf4;Celf4;Celf4;Celf4;Celf4,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,31,59,108013,ENSMUSG00000024268,conserved gene and region,18,25753376,25753608,233,*,233,18,0.592274678,0.882575758,0.077253219,5.03E-12,CpGisland,TRUE,U3,Pr-B
5655,cg18081310,-0.0000145,0.00000965,-1.50123305,0.134313137,loss,ns,0.00000866,0.0000164,0.528363092,0.597625387,pos,ns,-0.012163573,0.004801342,-2.533369454,0.011789804,neg,ns,1.9284934,0.00033904,0.000165118,2.053322244,0.040880112,pos,ns,0.761874779,Sox2,Sox2_Intron,3,34504454,34504503,34504502,34504503,50,-,AGACAGATGAGAGCTAAATTACTACTGACAATGTAATGCTATCCTGCTCG,"Intron (Sox2ot-204/Sox2ot-204, intron 2 of 3)",3,34650405,34652461,2057,1,Sox2-201,-145951,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,34,62,20674,ENSMUSG00000074637,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25792,cg18968817,0.00000926,0.00000357,2.595194071,0.009903381,gain,ns,0.0000032,0.00000606,0.52821493,0.597728083,pos,ns,0.004659083,0.001776021,2.623327244,0.00913817,pos,ns,2.03914078,-0.0000824,0.0000611,-1.348326406,0.178537717,neg,ns,0.097524549,Uncx,Uncx_Intergenic_downstream,5,139548721,139548770,139548721,139548722,50,-,CGGGGACTGGGTTTCTTGCCCAAAGGGTTATTATACATTACCGATTTCTA,Downstream (<1kb),5,139543898,139545268,1371,1,Uncx-202,4872,Uncx-201;Uncx-202,Uncx;Uncx,0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,59,88,22255,ENSMUSG00000029546,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
11266,cg00969724,0.0000102,0.00000432,2.359855699,0.018901483,gain,ns,0.00000388,0.00000735,0.52820453,0.597735292,pos,ns,-0.000408305,0.002152103,-0.189723664,0.849649842,neg,ns,0.070760019,-0.0000168,0.000074,-0.226417083,0.821026262,neg,ns,0.902023228,Gpd2,Gpd2_Intron,2,57280525,57280574,57280525,57280526,50,+,CGTTGACAGCTGGTGAGCTGCTAGGCTGTTGCTAACTGAGCAACATTGAC,"Intron (Gpd2-204/Gpd2, intron 2 of 11)",2,57237635,57367853,130219,1,Gpd2-204,42890,Gm13535-201;Gpd2-204;Gpd2-207;Gpd2-202;Gpd2-201;Gpd2-205,Gm13535;Gpd2;Gpd2;Gpd2;Gpd2;Gpd2,-4839;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,3,14571,ENSMUSG00000026827,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4134,cg01234945,0.0000124,0.00000651,1.902344289,0.058052725,gain,ns,0.00000584,0.0000111,0.52817312,0.597757064,pos,ns,0.007909505,0.0032407,2.440678325,0.015219269,pos,ns,1.817606211,-0.000242115,0.000111447,-2.172457015,0.030578621,neg,ns,0.48793265,Syngap1,Syngap1_Intron,17,26951594,26951643,26951594,26951595,50,+,CGCCCCGATGCAGCACCTGCCCCCCCATTGGCTGCAGTGGTGACTGTGGG,"Intron (Syngap1-204/Syngap1, intron 3 of 18)",17,26941253,26972434,31182,1,Syngap1-204,10341,Syngap1-204;Syngap1-213;Syngap1-208;Syngap1-202;Syngap1-207;Syngap1-203;Syngap1-201;Syngap1-212;Syngap1-214,Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,18,240057,ENSMUSG00000067629,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10858,cg25525511,-0.000011,0.00000363,-3.018570765,0.002750518,loss,ns,0.00000326,0.00000617,0.528161077,0.597765412,pos,ns,-0.001871324,0.001807115,-1.035531243,0.301227986,neg,ns,0.521104682,0.0000101,0.0000621,0.162862183,0.87073306,pos,ns,0.858792213,Tssk4,Tssk4_threeUTR,14,55651612,55651661,55651660,55651661,50,+,GAACTGCTTTTCCCACCTCAGCCAGACTTACTGTGGCAGCTTTGCTTACG,3' UTR,14,55650184,55652539,2356,1,Tssk4-201,1428,Gm49299-201;Tssk4-201;Tssk4-202;Tssk4-204;Tssk4-207;Tssk4-205;Tssk4-203;Tssk4-206,Gm49299;Tssk4;Tssk4;Tssk4;Tssk4;Tssk4;Tssk4;Tssk4,6547;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,71099,ENSMUSG00000007591,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15910,cg07187725,0.00000491,0.00000211,2.323419487,0.020803229,gain,ns,-0.0000019,0.00000359,-0.52816094,0.597765507,neg,ns,0.002968079,0.001052459,2.820136581,0.005109603,pos,ns,2.291612825,-0.0000962,0.0000362,-2.658831669,0.008248366,neg,ns,0.073895415,Haao,Haao_Intergenic_upstream,17,83861971,83862020,83861971,83861972,50,-,CGGTACTTATACAGCAGTACATGCAGAGCAATGCCGAGGTTGTGAGTTCG,Distal Intergenic,17,83837173,83847963,10791,2,Haao-205,-14057,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,6,107766,ENSMUSG00000000673,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
16097,cg02074136,-0.0000508,0.00000892,-5.689021563,2.96E-08,loss,yes,0.00000801,0.0000152,0.528118821,0.597794704,pos,ns,-0.007642188,0.004440807,-1.72090081,0.086266595,neg,ns,1.064157341,0.000111071,0.000152719,0.727293277,0.467595209,pos,ns,0.495434765,Bnc2,Bnc2_Intron,4,84403958,84404007,84404006,84404007,50,+,CTTGTCTCCTGTCTACTTTTCTTTGAGGCAATTGCGCACTCAGCACCCCG,"Intron (Bnc2-201/Bnc2, intron 5 of 7)",4,84275095,84675034,399940,2,Bnc2-201,271027,Bnc2-201;Bnc2-202;Bnc2-214;Bnc2-215;Bnc2-206;Bnc2-211;Bnc2-205;Bnc2-217;Bnc2-207;Bnc2-212;Bnc2-203;Bnc2-209;Bnc2-221;Bnc2-204,Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,91,242509,ENSMUSG00000028487,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5668,cg05717498,-0.00000145,0.00000294,-0.493775462,0.621814423,loss,ns,0.00000263,0.00000499,0.528054196,0.597839502,pos,ns,0.001574845,0.001461549,1.077517401,0.282086947,pos,ns,0.549617009,-0.0000715,0.0000503,-1.423019024,0.155736195,neg,ns,0.937168197,Mapkap1,Mapkap1_Intron,2,34531274,34531323,34531322,34531323,50,-,ACGGGTGGTTCACTTATCATTCCTGACTGCACAGACATGGCAGCCGCTCG,"Intron (Mapkap1-204/Mapkap1, intron 5 of 10)",2,34406862,34623475,216614,1,Mapkap1-204,124412,Mapkap1-204;Mapkap1-202;Mapkap1-201;Mapkap1-209;Mapkap1-203;Mapkap1-207,Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,59,227743,ENSMUSG00000038696,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20714,cg08573345,0.0000246,0.0000124,1.984721472,0.048056732,gain,ns,-0.0000111,0.0000211,-0.528029428,0.597856672,neg,ns,-0.003071723,0.006169794,-0.497864734,0.618932372,neg,ns,0.208356802,-0.0000823,0.000212179,-0.387820784,0.698414823,neg,ns,0.776846723,Dicer1,Dicer1_Intergenic_downstream,12,104593473,104593522,104593473,104593474,50,+,CGCTGTTTCAGATGTGTTTTGGATTGAAAATAGGATTAATGTGCTAAAGT,Distal Intergenic,12,104691443,104700502,9060,2,Dicer1-204,106980,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,12,192119,ENSMUSG00000041415,conserved gene and region,12,104593406,104593474,69,*,69,9,0.623188406,1.38,0.130434783,0.000000033,CpGisland,TRUE,NA,NRS
19122,cg21321412,-0.00000095,0.00000271,-0.350751907,0.726012712,loss,ns,0.00000243,0.0000046,0.527929109,0.597926218,pos,ns,0.002586901,0.001348557,1.918273141,0.055994741,pos,ns,1.251852761,-0.000109648,0.0000464,-2.364285221,0.018681037,neg,ns,0.930884533,Gm49017,Gm49017_Intergenic_upstream,14,98536454,98536503,98536454,98536455,50,-,CGGAAGGCTAATAAAGACCATTTAAAATAAAAGGGCCCATTACTCCTCAG,Distal Intergenic,14,98519416,98519700,285,2,Gm49017-201,-16803,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,11,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14594,cg13325740,0.00000741,0.00000275,2.693448328,0.007456617,gain,ns,0.00000247,0.00000467,0.527870955,0.597966535,pos,ns,-0.000841156,0.001368775,-0.614531829,0.539314715,neg,ns,0.26815773,-0.000000619,0.0000471,-0.013143317,0.989521906,neg,ns,0.955836941,Pcbp3,Pcbp3_Exon,10,76785125,76785174,76785125,76785126,50,-,CGGATCGGCTCTTACCTGACCACCTGCAAAAATGACAGGGGTGGAGGCGG,"Exon (Pcbp3-201/Pcbp3, exon 10 of 16)",10,76761857,76961788,199932,2,Pcbp3-201,176614,Pcbp3-201;Pcbp3-207;Pcbp3-206;Pcbp3-203;Pcbp3-205;Pcbp3-209;Pcbp3-202;Pcbp3-208,Pcbp3;Pcbp3;Pcbp3;Pcbp3;Pcbp3;Pcbp3;Pcbp3;Pcbp3,0;0;0;0;0;0;0;120688,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,59093,ENSMUSG00000001120,conserved gene and region,10,76784969,76785131,163,*,163,14,0.656441718,0.823232323,0.085889571,4.50E-10,CpGisland,TRUE,U15,NS
20403,cg21493516,0.0000628,0.00000816,7.695617201,1.90E-13,gain,yes,0.00000732,0.0000139,0.527869001,0.59796789,pos,ns,0.007026808,0.004059832,1.730812457,0.084480274,pos,ns,1.073244684,-0.000188738,0.000139617,-1.35182311,0.177417402,neg,ns,0.066619369,Hoxc4,Hoxc4_Intron,15,103032881,103032930,103032881,103032882,50,-,CGGGCGATTCCGCGAGACTGATTTATGACGTTTTACAGCCCTATAAAAGC,"Intron (Hoxc4-202/Hoxc4, intron 1 of 3)",15,103018934,103036405,17472,1,Hoxc4-202,13947,Hoxc4-202;Hoxc4-201,Hoxc4;Hoxc4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,91,15423,ENSMUSG00000075394,conserved gene and region,15,103032736,103032961,226,*,226,19,0.517699115,1.262198707,0.084070797,2.37E-13,CpGisland,TRUE,U13,Hc-P
25997,cg15043910,-0.00000228,0.000000921,-2.475423739,0.013842002,loss,ns,0.000000826,0.00000157,0.527849665,0.597981296,pos,ns,0.000552091,0.000458531,1.204041488,0.22949208,pos,ns,0.639232298,-0.0000272,0.0000158,-1.724859996,0.08554941,neg,ns,0.968758554,Kif16b,Kif16b_Exon,2,142847056,142847105,142847056,142847057,50,-,CGAAGAGTACTTAGGGTTTCTCCATAATTGACATCAGCAGGTGAAATGGC,"Exon (Kif16b-205/Kif16b, exon 10 of 27)",2,142617474,142901519,284046,2,Kif16b-205,54414,Kif16b-205;Kif16b-201;Kif16b-203,Kif16b;Kif16b;Kif16b,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,16558,ENSMUSG00000038844,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27646,cg21830760,-0.0000042,0.0000021,-1.997994235,0.046590635,loss,ns,0.00000188,0.00000357,0.52784903,0.597981736,pos,ns,-0.0000998,0.001046024,-0.095401968,0.924057192,neg,ns,0.034301149,0.0000366,0.000036,1.016931864,0.309978849,pos,ns,0.941798032,Gm20721,Gm20721_threeUTR,2,174336753,174336802,174336753,174336754,50,-,CGAAGAGGACCCGCAGGCTGCAAGGAGCAACAGCGATGGGTAGGCACATT,3' UTR,2,174330319,174346712,16394,2,Gm20721-201,9910,Gm20721-201;Gnas-222;Gnas-211;Gnas-215;Gnas-214;Gnas-201;Gnas-209;Gnas-220;Gnas-223;Gnas-224;Gnas-203;Gnas-212;Gnas-221;Gnas-217;Gnas-202;Gnas-218;Gnas-207;Gnas-226;Gnas-208;Gnas-206;Gnas-205;Gnas-216,Gm20721;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas;Gnas,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,9,10,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5821,cg00058449,0.0000154,0.0000126,1.221630685,0.222775493,gain,ns,-0.0000113,0.0000215,-0.527563703,0.598179567,neg,ns,-0.008912208,0.006291064,-1.416645641,0.157590657,neg,ns,0.802469534,0.00035775,0.000216349,1.653579296,0.09922526,pos,ns,0.809848499,C2,C2_Exon,17,34896366,34896415,34896366,34896367,50,+,CGCCACATGAACGTGCATCGTGGTGTCAAGTCACACTCGTGCGGCATCTG,"Exon (Zbtb12-201/Zbtb12, exon 2 of 2)",17,34893353,34898265,4913,2,C2-207,1850,C2-205;C2-208;C2-207;Ehmt2-204;Ehmt2-202;Ehmt2-203;Ehmt2-201;Ehmt2-212;Zbtb12-202;Zbtb12-201,C2;C2;C2;Ehmt2;Ehmt2;Ehmt2;Ehmt2;Ehmt2;Zbtb12;Zbtb12,-819;-809;0;0;0;0;0;-3279;16883;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,12263,ENSMUSG00000024371,mapped to different genes,17,34896297,34896535,239,*,239,15,0.585774059,0.777488614,0.062761506,7.80E-09,CpGisland,TRUE,U8,En-Pd
12065,cg05737610,-0.00000125,0.00000101,-1.239249408,0.216190546,loss,ns,0.000000906,0.00000172,0.527550736,0.598188558,pos,ns,0.000960095,0.000503059,1.90851513,0.057248087,pos,ns,1.242239018,-0.000039,0.0000173,-2.257141128,0.024695081,neg,ns,0.974616704,Efna5,Efna5_Intron,17,62659635,62659684,62659683,62659684,50,+,ATTACACGTCTTTGCTATGCTACAGCTGATCAAAATAAGATGTGGTCCCG,"Intron (Efna5-201/Efna5, intron 1 of 4)",17,62604184,62881317,277134,2,Efna5-201,221633,Efna5-201;Efna5-202,Efna5;Efna5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,21,13640,ENSMUSG00000048915,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9000,cg03976212,-0.000000825,0.000000403,-2.047031271,0.041497843,loss,ns,0.000000361,0.000000685,0.527438265,0.598266549,pos,ns,0.000360347,0.000200609,1.79626925,0.073425244,pos,ns,1.134154602,-0.00000976,0.0000069,-1.414642871,0.158176861,neg,ns,0.008956186,Trim8,Trim8_Exon,19,46502805,46502854,46502805,46502806,50,-,CGCACCTGCAGCAGCCCTCCACCGCCCGCGGGCACCTCCTGGTGGAGGCG,"Exon (Trim8-201/Trim8, exon 1 of 6)",19,46501702,46516848,15147,1,Trim8-201,1103,Trim8-201,Trim8,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,15,21,93679,ENSMUSG00000025034,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
23217,cg07634351,0.00000611,0.00000388,1.57363962,0.116590788,gain,ns,0.00000348,0.0000066,0.527402021,0.598291683,pos,ns,-0.000243461,0.001932723,-0.125967786,0.899839082,neg,ns,0.045835149,-0.0000476,0.0000665,-0.71616509,0.474428549,neg,ns,0.935035116,Xylt1,Xylt1_Intron,7,117501804,117501853,117501852,117501853,50,-,GGTTTTAATTATCCCTGCTTTGCCCGAGTTAGGAATTCCCAATGGTGCCG,"Intron (Xylt1-202/Xylt1, intron 2 of 6)",7,117380979,117635185,254207,1,Xylt1-202,120825,Xylt1-202;Xylt1-201;Xylt1-203,Xylt1;Xylt1;Xylt1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,6,233781,ENSMUSG00000030657,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2488,cg25869160,-0.000000642,0.00000167,-0.384465427,0.700897119,loss,ns,-0.0000015,0.00000284,-0.527378383,0.598308074,neg,ns,0.001169795,0.000830935,1.407806012,0.160190489,pos,ns,0.795363272,-0.0000193,0.0000286,-0.675284554,0.499998367,neg,ns,0.067302477,Spred2,Spred2_fiveUTR,11,19924912,19924961,19924912,19924913,50,-,CGTCTAGGTGAACAAGAAAATGACCGAAGAAACACACCCAGACGAGTAAG,Promoter (<=1kb),11,19924375,20024026,99652,1,Spred2-202,537,Spred2-202;Spred2-201,Spred2;Spred2,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,8,13,114716,ENSMUSG00000045671,conserved gene and region,11,19924842,19925248,407,*,407,39,0.683046683,0.873823287,0.095823096,3.68E-29,CpGisland,TRUE,U1,Pr-A
17462,cg25307053,-0.000003,0.00000234,-1.281769214,0.200881438,loss,ns,0.0000021,0.00000397,0.527303002,0.59836035,pos,ns,-0.001042509,0.001164208,-0.895466047,0.371232782,neg,ns,0.43035368,-0.00000582,0.00004,-0.145430683,0.884465354,neg,ns,0.938619394,Nrxn3,Nrxn3_threeUTR,12,90332212,90332261,90332212,90332213,50,-,CGCCCTCTGCATCTTGATCCTCCTGTACGCCATGTACAAGTACAGGAACA,3' UTR,12,88722986,90332878,1609893,1,Nrxn3-213,1609226,Nrxn3-213;Nrxn3-208;Nrxn3-205;Nrxn3-201;Nrxn3-210;Nrxn3-214;Nrxn3-203;Nrxn3-202,Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,14,39,18191,ENSMUSG00000066392,conserved gene and region,12,90332093,90332366,274,*,274,16,0.591240876,0.669108669,0.058394161,6.19E-09,CpGisland,TRUE,NA,NRS
3158,cg21665058,0.0000635,0.00000814,7.804284291,9.26E-14,gain,yes,0.00000729,0.0000138,0.527298535,0.598363448,pos,ns,0.008205376,0.004050033,2.026002147,0.043620719,pos,ns,1.360307181,-0.0000512,0.00013928,-0.367375903,0.713589317,neg,ns,0.130979039,Nol4,Nol4_Exon,18,23039962,23040011,23039962,23039963,50,-,CGTCTTGGTCTTGCCTGAGTCCCCGTAAGTCCTGAGGCACCAGTCCTGGA,"Exon (Nol4-204/Nol4, exon 1 of 10)",18,22693634,23041653,348020,2,Nol4-204,1642,Nol4-202;Nol4-204;Nol4-208;Nol4-206;Nol4-209,Nol4;Nol4;Nol4;Nol4;Nol4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,16,21,319211,ENSMUSG00000041923,conserved gene and region,18,23039723,23040174,452,*,452,35,0.595132743,0.893280632,0.077433628,6.56E-23,CpGisland,TRUE,U13,Hc-P
19414,cg01579422,-0.000000976,0.00000554,-0.175988738,0.860417697,loss,ns,0.00000497,0.00000942,0.527192059,0.598437291,pos,ns,0.007805282,0.002759157,2.828864258,0.004975778,pos,ns,2.303139011,-0.000196712,0.0000949,-2.073118558,0.038987093,neg,ns,0.90730766,Gm12689,Gm12689_Intergenic_upstream,4,99266798,99266847,99266846,99266847,50,-,AATACAAATTCTTGTATTAATAGGAGCATGGCCCTGGGTTTCTTCATCCG,Distal Intergenic,4,99295900,99297258,1359,1,Gm12689-201,-29102,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,26,100137011,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2768,cg05797975,0.000144131,0.000011,13.12127001,1.39E-31,gain,yes,-0.00000984,0.0000187,-0.527169242,0.598453115,neg,ns,0.013899503,0.005467109,2.542386088,0.011496107,pos,ns,1.93944922,-0.0000228,0.000188013,-0.121095484,0.903693858,neg,ns,0.174198204,Prdm13,Prdm13_Promoter,4,21687967,21688016,21687967,21687968,50,+,CGAACAATTTTATCAATAGGACCATGTAAAGGCCGACTGTGAGGAAAGTT,Promoter (2-3kb),4,21677481,21685963,8483,2,Prdm13-202,-2004,Prdm13-205;Prdm13-201;Prdm13-202;Prdm13-203;Prdm13-206;Prdm13-204,Prdm13;Prdm13;Prdm13;Prdm13;Prdm13;Prdm13,0;0;0;0;0;-2122,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,19,23,230025,ENSMUSG00000040478,conserved gene and region,4,21687850,21688001,152,*,152,12,0.546052632,1.062937063,0.078947368,2.89E-08,CpGisland,TRUE,U13,Hc-P
16509,cg01022031,-0.0000129,0.00000338,-3.803492166,0.000171835,loss,ns,-0.00000303,0.00000575,-0.527090105,0.598508002,neg,ns,-0.002272173,0.001683654,-1.349549196,0.178145345,neg,ns,0.749225521,-0.00000894,0.0000579,-0.154352789,0.877432017,neg,ns,0.910453609,Fbln1,Fbln1_Exon,15,85242058,85242107,85242058,85242059,50,-,CGCTGCATCAACATCCCTGGAAGCTTCCAGTGCAGCTGCCCCTCGTCTGG,"Exon (Fbln1-201/Fbln1, exon 13 of 17)",15,85205949,85286535,80587,1,Fbln1-201,36109,Fbln1-201;Fbln1-202,Fbln1;Fbln1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,14114,ENSMUSG00000006369,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24048,cg08382491,-0.00000221,0.000000964,-2.293811859,0.022469954,loss,ns,-0.000000863,0.00000164,-0.527083457,0.598512613,neg,ns,0.000292731,0.000479769,0.610148721,0.542210303,pos,ns,0.265832234,-0.00000117,0.0000165,-0.071071635,0.943386571,neg,ns,0.030312624,Bcar3,Bcar3_Exon,3,122292970,122293019,122292970,122292971,50,+,CGGAACCTTTGAATGCCTTCAGCCTCTAGAAGTCCAATGCGCTATCCATT,Promoter (1-2kb),3,122294136,122427148,133013,1,Bcar3-202,-1117,Bcar3-202,Bcar3,-1117,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,8,29815,ENSMUSG00000028121,conserved gene and region,3,122292926,122294040,1115,*,1115,150,0.722869955,1.030721351,0.134529148,3.20E-135,CpGisland,TRUE,NA,NRS
18917,cg03991594,-0.0000538,0.0000136,-3.945665657,0.0000985,loss,ns,0.0000122,0.0000231,0.527069961,0.598521973,pos,ns,0.043557744,0.006780801,6.423687122,5.00E-10,pos,ns,9.301059697,-0.00068201,0.000233191,-2.924681938,0.003702366,neg,ns,0.83693226,Nfia,Nfia_Intron,4,97906103,97906152,97906103,97906104,50,+,CGGTAATAATGGCACATTGTGAATATTTAAGCTGAAAAGATTTGGGCAAA,"Intron (Nfia-208/Nfia, intron 2 of 3)",4,97772734,98000466,227733,1,Nfia-208,133369,Nfia-208;Nfia-202;Nfia-203;Nfia-205;Nfia-201;Nfia-204;Nfia-207;Nfia-206,Nfia;Nfia;Nfia;Nfia;Nfia;Nfia;Nfia;Nfia,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,44,18027,ENSMUSG00000028565,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2392,cg01974011,0.0000365,0.00000417,8.745061185,1.44E-16,gain,yes,-0.00000373,0.00000708,-0.5270128,0.59856162,neg,ns,0.007816175,0.002075236,3.766402808,0.000198153,pos,ns,3.702999487,-0.000148587,0.0000714,-2.082005899,0.038161884,neg,ns,0.055584372,Tfap2b,Tfap2b_Exon,1,19234211,19234260,19234211,19234212,50,-,CGGCCCTGCAGAACTATCTCACCGAGGCGCTCAAAGGCATGGACAAGATG,"Exon (Tfap2b-201/Tfap2b, exon 7 of 7)",1,19208914,19238576,29663,1,Tfap2b-201,25297,Tfap2b-201;Tfap2b-204;Tfap2b-202,Tfap2b;Tfap2b;Tfap2b,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,40,21419,ENSMUSG00000025927,conserved gene and region,1,19234070,19234239,170,*,170,15,0.647058824,0.866168478,0.088235294,6.13E-11,CpGisland,TRUE,U13,Hc-P
20033,cg11864866,-0.0000966,0.0000151,-6.415835483,5.23E-10,loss,yes,0.0000135,0.0000256,0.526874341,0.598657658,pos,ns,-0.017379047,0.007491269,-2.319906982,0.020995128,neg,ns,1.677881471,0.00016371,0.000257624,0.635459114,0.525597816,pos,ns,0.757139162,Stim1,Stim1_Promoter,7,102266544,102266593,102266592,102266593,50,-,TTTATATCAACGGCCTAACCCTTAAGCCAGGCAGCTGTTGGGCAAATTCG,Promoter (1-2kb),7,102267806,102437318,169513,1,Stim1-201,-1262,Stim1-201;Stim1-208;Stim1-203;Stim1-202;Stim1-209,Stim1;Stim1;Stim1;Stim1;Stim1,0;-1219;-1226;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,6,20866,ENSMUSG00000030987,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
17408,cg12499488,-0.00000831,0.00000547,-1.519979062,0.129535488,loss,ns,0.00000489,0.00000929,0.526742907,0.598748832,pos,ns,0.000214913,0.00272144,0.078970478,0.937107056,pos,ns,0.028210792,-0.000087,0.0000936,-0.929052986,0.35358447,neg,ns,0.873267082,Nrxn1,Nrxn1_Exon,17,90162287,90162336,90162287,90162288,50,+,CGATGTTGGCATCGTTTTCGGCTGCCATATTCAGAACTTTCAAGCCATTG,"Exon (Nrxn1-202/Nrxn1, exon 19 of 21)",17,90033631,91088907,1055277,2,Nrxn1-202,926571,Nrxn1-202;Nrxn1-207;Nrxn1-216;Nrxn1-204;Nrxn1-217;Nrxn1-209;Nrxn1-201;Nrxn1-213;Nrxn1-206;Nrxn1-223;Nrxn1-219,Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,22,27,18189,ENSMUSG00000024109,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10201,cg13184142,0.0000115,0.0000018,6.378063259,6.51E-10,gain,yes,-0.00000161,0.00000306,-0.526701459,0.598777585,neg,ns,0.001217507,0.000896758,1.357677235,0.175553578,pos,ns,0.755590315,-0.00000427,0.0000308,-0.138414661,0.890002578,neg,ns,0.042895238,Hoxa10,Hoxa10_Exon,6,52232574,52232623,52232622,52232623,50,-,TCCTGCGGTTCTGAAACCAGATTTTCACTTGTCTGTCCGTGAGGTGGACG,"Exon (Hoxa10-202/Hoxa10, exon 2 of 2)",6,52231197,52234939,3743,2,Hoxa10-202,2316,Hoxa10-202;Hoxa10-203;Hoxa10-201;Hoxa10-204;Hoxa9-203;Hoxa9-204;Hoxa9-205,Hoxa10;Hoxa10;Hoxa10;Hoxa10;Hoxa9;Hoxa9;Hoxa9,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,7,15395,ENSMUSG00000000938,mapped to different genes,6,52232537,52232652,116,*,116,10,0.50862069,1.33640553,0.086206897,0.000000263,CpGisland,TRUE,NA,NRS
9367,cg26137606,-0.0000179,0.0000104,-1.728052031,0.084974723,loss,ns,-0.00000928,0.0000176,-0.526645341,0.598816515,neg,ns,-0.005261405,0.0051647,-1.018724238,0.309128279,neg,ns,0.509861264,0.00000362,0.000177614,0.02039059,0.983744909,pos,ns,0.800601824,Tenm3,Tenm3_fiveUTR,8,48417061,48417110,48417109,48417110,50,+,GGACTCGGGTGTGGTTTGCAGCTCGGCGGGCAAAGCAGCCGGCGGGGCCG,5' UTR,8,48227682,48674690,447009,2,Tenm3-201,257580,Tenm3-201;Tenm3-206;Tenm3-204;Tenm3-208;Tenm3-203;Tenm3-202,Tenm3;Tenm3;Tenm3;Tenm3;Tenm3;Tenm3,0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,7,39,23965,ENSMUSG00000031561,conserved gene but different region,8,48417060,48417110,51,*,51,7,0.745098039,1.0625,0.137254902,0.00000149,CpGisland,TRUE,U15,NS
18827,cg25813254,0.0000021,0.00000574,0.366123591,0.714522586,gain,ns,0.00000514,0.00000976,0.526470969,0.598937489,pos,ns,-0.004170515,0.002859306,-1.458576108,0.145694234,neg,ns,0.836557636,0.000164769,0.0000983,1.675650704,0.094814904,pos,ns,0.85113994,E130114P18Rik,E130114P18Rik_Intron,4,97583123,97583172,97583123,97583124,50,-,CGTTCCTAACTGGACCGTGAACTTCAGCTCATTTCACATAGATATCAGTT,"Intron (E130114P18Rik-207/E130114P18Rik, intron 1 of 4)",4,97568133,97584596,16464,2,E130114P18Rik-207,1424,E130114P18Rik-207;E130114P18Rik-201;E130114P18Rik-203;E130114P18Rik-202;E130114P18Rik-206;E130114P18Rik-204;E130114P18Rik-209;E130114P18Rik-208,E130114P18Rik;E130114P18Rik;E130114P18Rik;E130114P18Rik;E130114P18Rik;E130114P18Rik;E130114P18Rik;E130114P18Rik,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,24,319865,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25720,cg02169296,0.0000018,0.00000206,0.876405964,0.38148799,gain,ns,0.00000184,0.0000035,0.526303926,0.599053389,pos,ns,0.00220444,0.00102429,2.15216298,0.032156322,pos,ns,1.49273363,-0.0000678,0.0000352,-1.926168289,0.054997547,neg,ns,0.094296048,Tspan5,Tspan5_fiveUTR,3,138742551,138742600,138742551,138742552,50,-,CGGGGCAAGTGTCTTCATGAACCCAGAGGATGTCCGGGAAGCACTACAAG,Promoter (<=1kb),3,138742195,138907905,165711,1,Tspan5-201,356,Tspan5-201;Tspan5-207;Tspan5-204;Tspan5-209,Tspan5;Tspan5;Tspan5;Tspan5,0;0;0;-169,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,2,56224,ENSMUSG00000028152,conserved gene and region,3,138741870,138742586,717,*,717,97,0.744769875,0.979108302,0.135285914,6.12E-88,CpGisland,TRUE,U1,Pr-A
19788,cg25127022,-0.00000645,0.00000269,-2.392216386,0.017342331,loss,ns,-0.00000241,0.00000458,-0.526194581,0.599129261,neg,ns,0.000761528,0.001341214,0.567790142,0.57058846,pos,ns,0.243677016,-0.0000778,0.0000461,-1.686760452,0.09265541,neg,ns,0.925029002,Msl2,Msl2_Exon,9,101101824,101101873,101101824,101101825,50,+,CGTGCTACTCAAAATCCAAGTGTTCTTACATGCCGAGGCCAACGCTGCCC,"Exon (Msl2-201/Msl2, exon 2 of 2)",9,101074762,101104800,30039,1,Msl2-201,27062,Msl2-202;Msl2-201;Ppp2r3a-202;Ppp2r3a-201,Msl2;Msl2;Ppp2r3a;Ppp2r3a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,19,77853,ENSMUSG00000066415,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19267,cg17206952,-0.00000922,0.00000271,-3.39651547,0.000771471,loss,ns,-0.00000243,0.00000461,-0.526163229,0.599151017,neg,ns,0.000612656,0.001351127,0.453440962,0.650548487,pos,ns,0.186720329,-0.000149015,0.0000465,-3.207036384,0.001481177,neg,ns,0.939145371,Eml5,Eml5_Exon,12,98874527,98874576,98874575,98874576,50,-,TCCCTGAGATCAATCACAGTAATTGGTTTAAAAGTTAAATCCCAAAGACG,"Exon (Eml5-201/Eml5, exon 6 of 41)",12,98786805,98901172,114368,2,Eml5-201,26596,Eml5-201;Eml5-210,Eml5;Eml5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,319670,ENSMUSG00000051166,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27308,cg19938436,0.0000155,0.00000779,1.991410435,0.047313078,gain,ns,-0.00000696,0.0000132,-0.526038466,0.599237595,neg,ns,-0.001522155,0.003876629,-0.392649025,0.694848571,neg,ns,0.158109831,0.000150315,0.000133317,1.12749824,0.260403806,pos,ns,0.807586712,Rpsa-ps1,Rpsa-ps1_Intergenic_upstream,1,163574939,163574988,163574987,163574988,50,+,CCACTCTGCGTGTCAAGGGCATTTACAGTCGGCGTCAGAATGTTATGTCG,Distal Intergenic,1,163623793,163624678,886,1,Rpsa-ps1-201,-48805,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,4,665237,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13336,cg05478327,-0.0000262,0.0000063,-4.161402306,0.000041,loss,ns,0.00000563,0.0000107,0.525946006,0.59930176,pos,ns,0.0000877,0.003135385,0.027981281,0.977695085,pos,ns,0.009796568,-0.000166583,0.000107826,-1.544927251,0.123384063,neg,ns,0.84251717,0610010K14Rik,0610010K14Rik_Intergenic_downstream,11,70234238,70234287,70234286,70234287,50,+,TGCCTTTGGCCTCCATCTTGTGGCAGGCCCAGGGCCCAGGGCGACTTCCG,Downstream (<1kb),11,70235206,70236196,991,2,0610010K14Rik-211,1909,0610010K14Rik-211;0610010K14Rik-210;0610010K14Rik-205;0610010K14Rik-209;0610010K14Rik-202;0610010K14Rik-204;0610010K14Rik-208;0610010K14Rik-207;0610010K14Rik-203;0610010K14Rik-213;0610010K14Rik-212;0610010K14Rik-206;0610010K14Rik-201;0610010K14Rik-214;Bcl6b-201;Bcl6b-203;Bcl6b-202;Gm21988-201;Gm21988-202;Rnasek-202;Rnasek-201;Rnasek-203,0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;Bcl6b;Bcl6b;Bcl6b;Gm21988;Gm21988;Rnasek;Rnasek;Rnasek,1909;0;0;0;0;0;0;0;0;0;0;0;0;0;-4499;-4561;-4440;0;0;5493;5555;4771,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,3,9,104457,ENSMUSG00000020831,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20751,cg00090384,-0.0000247,0.00000503,-4.915665065,0.00000144,loss,yes,-0.0000045,0.00000855,-0.525910778,0.599326208,neg,ns,-0.003494723,0.002504663,-1.395286484,0.163928197,neg,ns,0.785346337,-0.0000639,0.0000861,-0.742156985,0.458554163,neg,ns,0.923106877,Gm5671,Gm5671_Intron,14,104943837,104943886,104943837,104943838,50,-,CGCAATTACCAGCAAGGTCAGAGAGTCAGCTAATTTAGAAATATCAGTCC,"Intron (D130009I18Rik-202/D130009I18Rik-202, intron 4 of 5)",14,105043450,105044354,905,1,Gm5671-201,-99613,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,12,435420,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12443,cg01537787,0.0000147,0.00000336,4.378758056,0.0000163,gain,ns,-0.000003,0.00000571,-0.525855469,0.599364594,neg,ns,0.002192451,0.001673318,1.310241512,0.191084135,pos,ns,0.718775369,-0.0000239,0.0000575,-0.415743241,0.677885536,neg,ns,0.039229379,Onecut2,Onecut2_fiveUTR,18,64340362,64340411,64340362,64340363,50,+,CGGGCCCTGATGGACTGAATGAAGGCTGCCTACACCGCCTATCGATGCCT,Promoter (<=1kb),18,64340020,64400987,60968,1,Onecut2-201,342,Onecut2-201,Onecut2,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,19,225631,ENSMUSG00000045991,conserved gene and region,18,64339929,64340544,616,*,616,67,0.73538961,0.829721362,0.108766234,1.14E-53,CpGisland,TRUE,NA,NRS
13319,cg20568292,0.0000704,0.0000104,6.75751499,6.96E-11,gain,yes,-0.00000931,0.0000177,-0.525763,0.599428771,neg,ns,0.012127766,0.005185643,2.338719761,0.019985135,pos,ns,1.699292915,-0.000357857,0.000178334,-2.006671577,0.045652738,neg,ns,0.064683897,Egr3,Egr3_Exon,14,70079776,70079825,70079776,70079777,50,-,CGACGAGCGCAAGCGCCACGCCAAGATCCACCTCAAGCAAAAGGAGAAGA,"Exon (Egr3-201/Egr3, exon 3 of 3)",14,70077203,70079955,2753,1,Egr3-201,2573,Egr3-201;Egr3-204;Egr3-203;Egr3-202,Egr3;Egr3;Egr3;Egr3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,19,13655,ENSMUSG00000033730,conserved gene but different region,14,70079463,70079912,450,*,450,43,0.666666667,0.886638563,0.095555556,4.86E-32,CpGisland,TRUE,U13,Hc-P
26134,cg24978178,-0.0000273,0.00000984,-2.772672166,0.005896313,loss,ns,0.00000879,0.0000167,0.525751071,0.599437051,pos,ns,-0.010826983,0.004895952,-2.211415365,0.02773643,neg,ns,1.556949434,0.00000845,0.000168371,0.050171373,0.960018135,pos,ns,0.756741633,Lmo4,Lmo4_Intergenic_downstream,3,144174200,144174249,144174200,144174201,50,-,CGTGTTGCTAATTCATTTCCAGATTTAATTAGCTCAGAGAAGAAATGTTG,Distal Intergenic,3,144189062,144194818,5757,2,Lmo4-206,20618,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,54,16911,ENSMUSG00000028266,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17535,cg03786140,-0.00000162,0.00000423,-0.382074297,0.702668042,loss,ns,-0.00000378,0.00000718,-0.525741648,0.599443591,neg,ns,0.002108437,0.002104129,1.002047268,0.317102279,pos,ns,0.498800636,-0.000117634,0.0000724,-1.625652508,0.105039736,neg,ns,0.918927619,Fnbp4,Fnbp4_Exon,2,90767459,90767508,90767459,90767460,50,-,CGAAAACTTCAGGATGCAGCAGAACAACTAAAACAGTATGAAATAAACGC,"Exon (Fnbp4-201/Fnbp4, exon 11 of 17)",2,90745370,90781021,35652,1,Fnbp4-201,22089,Fnbp4-201;Fnbp4-210;Fnbp4-202;Fnbp4-209;Fnbp4-208;Fnbp4-207;Fnbp4-206;Fnbp4-205,Fnbp4;Fnbp4;Fnbp4;Fnbp4;Fnbp4;Fnbp4;Fnbp4;Fnbp4,0;0;0;0;0;0;-597;-1154,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,6,55935,ENSMUSG00000008200,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21794,cg00447136,-0.0000159,0.00000726,-2.190256118,0.029250323,loss,ns,0.00000648,0.0000123,0.525672016,0.599491922,pos,ns,-0.000286304,0.003612152,-0.079261238,0.936875977,neg,ns,0.028317897,-0.000179449,0.000124222,-1.444589999,0.149583057,neg,ns,0.849283144,Lmo1,Lmo1_Intron,7,109166157,109166206,109166205,109166206,50,+,AAAAGCAATCCAAATCATGAATCATATGGGAAACTTTTAGCAAGACACCG,"Intron (Lmo1-201/Lmo1, intron 1 of 3)",7,109138572,109170519,31948,2,Lmo1-201,4313,Lmo1-201;Lmo1-202;Lmo1-203,Lmo1;Lmo1;Lmo1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,66,109594,ENSMUSG00000036111,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13882,cg02519894,0.00000908,0.00000226,4.010996973,0.0000758,gain,ns,0.00000202,0.00000385,0.525658187,0.59950152,pos,ns,-0.000327041,0.001127264,-0.290119711,0.771918624,neg,ns,0.112428481,0.0000789,0.0000388,2.036504797,0.042549234,pos,ns,0.84846829,Ptk2,Ptk2_Exon,15,73257119,73257168,73257167,73257168,50,+,GAGGACAATTTGGAGGCATTGGTAATCTTTCCCCATTTTCAATTCGACCG,"Exon (Ptk2-208/Ptk2, exon 23 of 34)",15,73205102,73423128,218027,2,Ptk2-208,165960,Ptk2-208;Ptk2-201;Ptk2-216;Ptk2-211;Ptk2-215;Ptk2-204,Ptk2;Ptk2;Ptk2;Ptk2;Ptk2;Ptk2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,5,14083,ENSMUSG00000022607,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16057,cg18778818,0.000145936,0.000032,4.56699872,0.00000715,gain,ns,0.0000285,0.0000543,0.525635716,0.599517117,pos,ns,0.03557291,0.015904098,2.236713412,0.026015938,pos,ns,1.584760513,-0.00146479,0.000546941,-2.678151888,0.007797622,neg,ns,0.557918858,Acaca,Acaca_Intron,11,84324616,84324665,84324664,84324665,50,+,ACATGTAGTGTTTACTCTGCCAGTATGAATACAAATAGTCTTATTATACG,"Intron (Acaca-202/Acaca, intron 41 of 55)",11,84173122,84401651,228530,1,Acaca-202,151494,Acaca-202;Acaca-201,Acaca;Acaca,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,28,28,107476,ENSMUSG00000020532,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15653,cg06799948,0.0000309,0.00000416,7.438962338,1.00E-12,gain,yes,-0.00000371,0.00000706,-0.525321801,0.599735026,neg,ns,0.00771069,0.002069537,3.725804235,0.000231305,pos,ns,3.635814277,-0.000246251,0.0000712,-3.459987617,0.000615908,neg,ns,0.064918831,Nfib,Nfib_Exon,4,82505776,82505825,82505824,82505825,50,+,CTCCAAATCAGACTTAAGGATTGTTTTATTATTTAATTACACAATCATCG,Promoter (<=1kb),4,82495984,82505779,9796,2,Nfib-208,0,Nfib-201;Nfib-203;Nfib-202;Nfib-205;Nfib-206;Nfib-204;Nfib-207;Nfib-209;Nfib-210;Nfib-208;Nfib-212,Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,66,18028,ENSMUSG00000008575,conserved gene but different region,4,82505824,82505967,144,*,144,11,0.645833333,1.126600285,0.076388889,0.000000184,CpGisland,TRUE,U1,Pr-A
1272,cg25718356,0.0000164,0.00000565,2.901131575,0.003984243,gain,ns,0.00000504,0.0000096,0.525291035,0.599756385,pos,ns,0.0033007,0.002812156,1.173725776,0.241405839,pos,ns,0.617252229,-0.0000365,0.0000967,-0.377057967,0.706388508,neg,ns,0.649513241,Bcor,Bcor_Intron,X,12152681,12152730,12152729,12152730,50,+,CCCCGCGTTGTCAGCTGAACATAATGCAAATTATTTATGGGCTGTCTGCG,"Intron (Bcor-201/Bcor, intron 1 of 13)",20,12036743,12160355,123613,2,Bcor-201,7625,Bcor-201;Bcor-208,Bcor;Bcor,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,56,74,71458,ENSMUSG00000040363,conserved gene and region,X,12152729,12152829,101,*,101,10,0.653465347,0.935185185,0.099009901,6.91E-08,CpGisland,TRUE,NA,NRS
13347,cg22444717,0.00000391,0.00000288,1.35735797,0.175654845,gain,ns,-0.00000257,0.0000049,-0.525238469,0.599792878,neg,ns,-0.000589384,0.00143492,-0.410743406,0.68154446,neg,ns,0.166505808,0.00000797,0.0000493,0.161491314,0.87181165,pos,ns,0.877132985,Trim9,Trim9_Exon,12,70268031,70268080,70268031,70268032,50,+,CGCTCTGAGGGATACTGCTGAAGGGCCTTACCCTCAGACGTTTGGAGGAC,Promoter (<=1kb),12,70266150,70268048,1899,2,Trim9-207,0,Trim9-202;Trim9-201;Trim9-211;Trim9-209;Trim9-206;Trim9-203;Trim9-205;Trim9-210;Trim9-208;Trim9-207,Trim9;Trim9;Trim9;Trim9;Trim9;Trim9;Trim9;Trim9;Trim9;Trim9,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,7,94090,ENSMUSG00000021071,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7845,cg08393158,-0.0000169,0.00000589,-2.863929483,0.004469614,loss,ns,0.00000526,0.00001,0.525167342,0.59984226,pos,ns,-0.004693987,0.002932017,-1.600941454,0.110408416,neg,ns,0.95699782,0.00015334,0.000100832,1.520746473,0.129342767,pos,ns,0.880426367,Gm12455,Gm12455_Intergenic_downstream,4,44510759,44510808,44510807,44510808,50,-,GCTTCTTGCTATCATAAAAGAGATGTTCTAAACCCCAAACATAAAGATCG,Distal Intergenic,4,44382922,44383337,416,1,Gm12455-201,127886,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,15,15,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20682,cg15189202,0.0000581,0.00000994,5.843483186,1.29E-08,gain,yes,-0.00000886,0.0000169,-0.524889938,0.600034869,neg,ns,0.002176208,0.004945728,0.44001776,0.660230866,pos,ns,0.180304176,0.000144827,0.000170083,0.851506685,0.395145239,pos,ns,0.186456994,Pou4f1,Pou4f1_Intron,14,104457112,104457161,104457112,104457113,50,+,CGAAGCAGCTTGAGATAGTACCTTAGGCATCCCCTACGGCCATTAACATA,"Intron (D130079A08Rik-202/D130079A08Rik-202, intron 1 of 4)",14,104463973,104465365,1393,2,Pou4f1-202,8204,Pou4f1-201,Pou4f1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,31,18996,ENSMUSG00000048349,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
19204,cg00246767,-0.0000165,0.00000337,-4.901083173,0.00000154,loss,yes,0.000003,0.00000572,0.524882861,0.600039783,pos,ns,-0.004925596,0.001676712,-2.937652299,0.003555019,neg,ns,2.449158058,0.0000568,0.0000577,0.985831491,0.32498461,pos,ns,0.93325711,Kank4,Kank4_Exon,4,98777005,98777054,98777053,98777054,50,+,TTAACCCCAACAAACTGAAGGTTCTTTTTGGTCCCATTACCTCCTGCACG,"Exon (Kank4-201/Kank4, exon 4 of 10)",4,98754898,98817537,62640,2,Kank4-201,40483,Kank4-201,Kank4,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,242553,ENSMUSG00000035407,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10602,cg17458251,-0.00000451,0.00000206,-2.188059218,0.029411525,loss,ns,0.00000184,0.0000035,0.524751474,0.600131019,pos,ns,-0.000116845,0.001025454,-0.113944382,0.909355642,neg,ns,0.041266234,0.00000354,0.0000353,0.100395883,0.920094935,pos,ns,0.947479563,Acin1,Acin1_Exon,14,54650867,54650916,54650867,54650868,50,+,CGGATTACCGTACATGAGGTACTTGGACAAAGTTTTACGGGGAAGAAGGA,"Exon (Acin1-213/Acin1, exon 4 of 4)",14,54642161,54653616,11456,2,Acin1-208,2700,Acin1-208;Acin1-216;Acin1-202;Acin1-201;Acin1-219;Acin1-218;Acin1-221;Acin1-224;Acin1-203;Acin1-205;Acin1-211;Acin1-225;Acin1-207;Acin1-204;Acin1-226;Acin1-213;Acin1-214;Acin1-209;Acin1-220;Gm17606-201,Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Gm17606,0;0;0;0;0;0;0;0;0;0;-4820;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,22,56215,ENSMUSG00000022185,conserved gene but different region,14,54650681,54650905,225,*,225,16,0.6,0.802854594,0.071111111,3.42E-10,CpGisland,TRUE,U10,Tr-S
21960,cg25045017,-0.000000462,0.0000021,-0.219928995,0.826071208,loss,ns,0.00000187,0.00000357,0.524484581,0.600316371,pos,ns,0.002429428,0.001046089,2.322390697,0.020859275,pos,ns,1.680700791,-0.0000982,0.000036,-2.729823445,0.00669906,neg,ns,0.940641655,Ap1g1,Ap1g1_Exon,8,109832713,109832762,109832761,109832762,50,+,GCAGCTTGTGCCCCAATTAGTTCGTATTTTAAAGAACCTCATCATGTCCG,"Exon (Ap1g1-202/Ap1g1, exon 8 of 24)",8,109778554,109864204,85651,1,Ap1g1-202,54159,Ap1g1-202;Ap1g1-201,Ap1g1;Ap1g1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,16,11765,ENSMUSG00000031731,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2202,cg23070857,0.00000151,0.00000219,0.688740184,0.491501904,gain,ns,-0.00000195,0.00000372,-0.524420031,0.600361204,neg,ns,0.000472078,0.001090938,0.432726466,0.665514391,pos,ns,0.176842549,0.0000359,0.0000375,0.955810431,0.339912776,pos,ns,0.954738798,Nhsl1,Nhsl1_Exon,10,18516043,18516092,18516043,18516044,50,+,CGCCAGGCCAGCCTTCGGCGGTCTCTAATTTACACAGACACTCTGGTAAG,"Exon (Nhsl1-208/Nhsl1, exon 5 of 6)",10,18318985,18531973,212989,1,Nhsl1-209,197058,Nhsl1-209;Nhsl1-203;Nhsl1-206;Nhsl1-201;Nhsl1-208;Nhsl1-202,Nhsl1;Nhsl1;Nhsl1;Nhsl1;Nhsl1;Nhsl1,0;0;108368;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,215819,ENSMUSG00000039835,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10183,cg25960060,0.0000452,0.00000621,7.277143212,2.82E-12,gain,yes,-0.00000553,0.0000106,-0.524273659,0.600462871,neg,ns,0.000961161,0.003092004,0.310853622,0.756120814,pos,ns,0.121408807,0.000163055,0.000106334,1.533430516,0.126189709,pos,ns,0.130641649,Hoxa7,Hoxa7_fiveUTR,6,52217379,52217428,52217379,52217380,50,+,CGCGTTCACATAATACGAAGAACTCATAATTTTGACCTGTGATTTGTTGT,5' UTR,6,52214491,52220393,5903,2,Hoxa7-205,2965,Gm28308-201;Hoxa3-201;Hoxa3-203;Hoxa7-205;Hoxa7-201;Hoxa7-202;Hoxa7-204;Hoxa7-203,Gm28308;Hoxa3;Hoxa3;Hoxa7;Hoxa7;Hoxa7;Hoxa7;Hoxa7,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,9,10,15404,ENSMUSG00000038236,conserved gene but different region,6,52217250,52217463,214,*,214,20,0.546728972,1.271538919,0.093457944,5.89E-15,CpGisland,TRUE,U3,Pr-B
24369,cg26745140,-0.00000153,0.00000373,-0.409564997,0.682407932,loss,ns,-0.00000332,0.00000634,-0.524185249,0.600524282,neg,ns,0.001446487,0.001856487,0.779153173,0.43648387,pos,ns,0.3600318,-0.0000752,0.0000638,-1.177708649,0.239816112,neg,ns,0.952568721,Zfp384,Zfp384_Exon,6,125031737,125031786,125031737,125031738,50,-,CGCCAACACCTCCTACCTGGCCCAGCACCTCCGTATCCACTCGGGGGCCA,"Exon (Zfp384-214/Zfp384, exon 9 of 12)",6,125009145,125036180,27036,1,Zfp384-210,22592,Zfp384-210;Zfp384-202;Zfp384-214;Zfp384-208;Zfp384-213;Zfp384-207;Zfp384-201;Zfp384-204;Zfp384-206;Zfp384-212;Zfp384-203;Zfp384-205;Zfp384-215;Zfp384-211,Zfp384;Zfp384;Zfp384;Zfp384;Zfp384;Zfp384;Zfp384;Zfp384;Zfp384;Zfp384;Zfp384;Zfp384;Zfp384;Zfp384,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,6,269800,ENSMUSG00000038346,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11567,cg18056194,-0.0000822,0.0000119,-6.909551551,2.77E-11,loss,yes,0.0000106,0.0000202,0.524183098,0.600525776,pos,ns,0.041692464,0.005922259,7.039960051,1.24E-11,pos,yes,10.90578001,-0.001269981,0.000203666,-6.235607233,1.47E-09,neg,yes,0.750002417,Fbxo33,Fbxo33_threeUTR,12,59201402,59201451,59201450,59201451,50,+,AGGTTGCTGACTGAGCCACAGCACAGCTGTGTACCACAGGTCGAAATTCG,3' UTR,12,59200655,59219725,19071,2,Fbxo33-201,18274,Fbxo33-201;Fbxo33-204;Fbxo33-202;Fbxo33-203,Fbxo33;Fbxo33;Fbxo33;Fbxo33,0;0;0;17350,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,7,11,70611,ENSMUSG00000035329,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27474,cg12875098,-0.00000932,0.00000179,-5.195475789,0.000000371,loss,yes,-0.0000016,0.00000305,-0.524087559,0.600592143,neg,ns,-0.00100099,0.000893091,-1.120815153,0.263234067,neg,ns,0.579657907,-0.0000199,0.0000307,-0.647097581,0.518047653,neg,ns,0.958034091,Pbx1,Pbx1_Intron,1,168328053,168328102,168328101,168328102,50,-,ATTCTTTCAGTCTAACAAGCTGAGGGGCTGTGGCTGCTGCCACATTGGCG,"Intron (Pbx1-208/Pbx1, intron 2 of 7)",1,168119364,168432270,312907,2,Pbx1-208,104168,Pbx1-208;Pbx1-205;Pbx1-206;Pbx1-201;Pbx1-202;Pbx1-204,Pbx1;Pbx1;Pbx1;Pbx1;Pbx1;Pbx1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,84,18514,ENSMUSG00000052534,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16990,cg08764009,-0.00000386,0.00000195,-1.97815593,0.048796238,loss,ns,-0.00000174,0.00000331,-0.524075293,0.600600664,neg,ns,-0.000782226,0.000970742,-0.805802378,0.420974477,neg,ns,0.375744234,-0.0000153,0.0000334,-0.458848097,0.646664796,neg,ns,0.945789257,Atg16l1,Atg16l1_Exon,1,87774817,87774866,87774817,87774818,50,-,CGACTCTCGCAGCCTGCTGGAGGCCTTCTGGATTCTATCACTAATATCTT,"Exon (Atg16l1-201/Atg16l1, exon 8 of 18)",1,87756013,87792428,36416,1,Atg16l1-201,18804,Atg16l1-210;Atg16l1-201;Atg16l1-208;Atg16l1-202;Atg16l1-203;Atg16l1-211;Atg16l1-205;Atg16l1-209;Atg16l1-204,Atg16l1;Atg16l1;Atg16l1;Atg16l1;Atg16l1;Atg16l1;Atg16l1;Atg16l1;Atg16l1,18947;0;0;0;0;0;0;-699;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,77040,ENSMUSG00000026289,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13806,cg12149303,0.00000194,0.0000023,0.843586447,0.399551002,gain,ns,-0.00000205,0.0000039,-0.524020633,0.600638636,neg,ns,0.001219292,0.001143965,1.065846676,0.28732237,pos,ns,0.54163056,-0.0000525,0.0000393,-1.333768445,0.183258852,neg,ns,0.948074663,Sp3,Sp3_threeUTR,2,72936657,72936706,72936705,72936706,50,-,AAAAAATAGTGTTTTATTAACTACCACACTGTTATAATACACTTTAAACG,3' UTR,2,72936427,72980446,44020,2,Sp3-202,43740,Sp3-202;Sp3-201;Sp3-204;Sp3-203,Sp3;Sp3;Sp3;Sp3,0;0;0;4378,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,6,20687,ENSMUSG00000027109,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2084,cg04095564,0.0000395,0.0000081,4.879315214,0.00000171,gain,yes,0.0000072,0.0000138,0.52381172,0.600783774,pos,ns,0.030274676,0.004029068,7.51406512,6.19E-13,pos,yes,12.20855915,-0.000683023,0.000138559,-4.929465122,0.00000135,neg,yes,0.139876053,A930004D18Rik,A930004D18Rik_Intron,2,18029092,18029141,18029140,18029141,50,+,CCGTATCACTTCAATTTTAATTAATCTTTTAAAACACCGCTGTCACGTCG,"Intron (A930004D18Rik-201/A930004D18Rik, intron 1 of 1)",2,18025193,18037737,12545,2,A930004D18Rik-201,8596,A930004D18Rik-201;A930004D18Rik-202;A930004D18Rik-203,A930004D18Rik;A930004D18Rik;A930004D18Rik,0;-332;-221,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,10,77940,ENSMUSG00000054057,mapped to different genes,2,18028841,18029141,301,*,301,25,0.631229236,0.845125786,0.083056478,2.77E-17,CpGisland,TRUE,NA,NRS
3144,cg11728741,0.0000412,0.00000619,6.657514162,1.27E-10,gain,yes,-0.00000551,0.0000105,-0.523760388,0.600819439,neg,ns,0.004378245,0.003079993,1.421511171,0.156173424,pos,ns,0.806392867,-0.0000734,0.000105921,-0.692705517,0.489012963,neg,ns,0.094082057,Ank1,Ank1_Exon,8,22975146,22975195,22975146,22975147,50,+,CGGCCAAACAGCTGAAGAAAATCAAAGACATCGAGGCGCAGGCCCTCCAG,Promoter (<=1kb),8,22974844,23149933,175090,1,Ank1-203,302,Ank1-203;Ank1-209;Ank1-204,Ank1;Ank1;Ank1,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,11733,ENSMUSG00000031543,conserved gene and region,8,22974402,22975183,782,*,782,125,0.805626599,0.989532718,0.159846547,3.27E-124,CpGisland,TRUE,U3,Pr-B
2737,cg09300249,0.0000155,0.00000234,6.643016907,1.38E-10,gain,yes,0.00000208,0.00000398,0.523688523,0.600869371,pos,ns,0.004563808,0.001164575,3.91886126,0.000109517,pos,ns,3.960519313,-0.0000902,0.00004,-2.253355493,0.02493536,neg,ns,0.043096267,Klhl14,Klhl14_Exon,18,21651795,21651844,21651843,21651844,50,+,ACACCTGCTTGTAGTTCTGCACCGAGATCTGGTCGTTGAGGAACTGCACG,Promoter (<=1kb),18,21550377,21652368,101992,2,Klhl14-201,524,Klhl14-201;Klhl14-202,Klhl14;Klhl14,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,38,225266,ENSMUSG00000042514,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
18529,cg01683971,0.0000807,0.0000121,6.700432134,9.80E-11,gain,yes,-0.0000107,0.0000205,-0.523555596,0.600961735,neg,ns,0.012170506,0.005998027,2.029084845,0.043303872,pos,ns,1.363473274,-0.000378296,0.000206272,-1.833971897,0.067616628,neg,ns,0.139857039,Hoxb9,Hoxb9_Exon,11,96274696,96274745,96274696,96274697,50,+,CGCTGGAGCTAGAGAAGGAGTTTCTGTTCAATATGTACCTCACCAGGGAC,"Exon (Hoxb9-201/Hoxb9, exon 2 of 2)",11,96271457,96276595,5139,1,Hoxb9-201,3239,Hoxb9-201;Hoxb9-202,Hoxb9;Hoxb9,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,22,15417,ENSMUSG00000020875,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
25687,cg12659984,-0.0000262,0.00000958,-2.735271065,0.006591797,loss,ns,-0.00000852,0.0000163,-0.523343741,0.601108954,neg,ns,-0.008974561,0.004770478,-1.881270643,0.060872103,neg,ns,1.215581694,0.0000446,0.000164056,0.271739143,0.786003481,pos,ns,0.874165626,Lmo3,Lmo3_Intron,6,138388674,138388723,138388674,138388675,50,-,CGTTACACAAGGCAGCTTGCTAATTGAGAAGTTGATCGGGGGTAGAGAAA,"Intron (Lmo3-204/Lmo3, intron 3 of 4)",6,138362918,138581968,219051,2,Lmo3-204,193245,Lmo3-204;Lmo3-207;Lmo3-201;Lmo3-206;Lmo3-202;Lmo3-208;Lmo3-203,Lmo3;Lmo3;Lmo3;Lmo3;Lmo3;Lmo3;Lmo3,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,38,109593,ENSMUSG00000030226,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26921,cg12193414,0.0000232,0.0000128,1.808842901,0.071444133,gain,ns,0.0000114,0.0000218,0.523330219,0.601118352,pos,ns,-0.001028988,0.006379565,-0.161294374,0.87196662,neg,ns,0.05950014,0.000266113,0.000219393,1.212951684,0.226071765,pos,ns,0.671007283,Actrt2,Actrt2_Intergenic_upstream,4,154709965,154710014,154710013,154710014,50,-,GTTCTCAATCAGGAAGCAGGCAGTAAATAAACATTTACGTCCCGCAGCCG,Distal Intergenic,4,154666433,154667867,1435,2,Actrt2-201,-42147,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,3,73353,ENSMUSG00000051276,conserved gene but different region,4,154710002,154710203,202,*,202,16,0.504950495,1.243076923,0.079207921,6.59E-11,CpGisland,TRUE,U11,Tr-P
3230,cg24083274,0.000209496,0.000017,12.35507877,8.73E-29,gain,yes,-0.0000151,0.0000288,-0.523297401,0.601141158,neg,ns,0.029551934,0.008439308,3.501701094,0.000530211,pos,ns,3.275551162,-0.000566043,0.000290227,-1.950346291,0.052035859,neg,ns,0.690155723,Cadps2,Cadps2_Intron,6,23280978,23281027,23280978,23280979,50,-,CGGTAAGTAGTGACTGACAATAAGGCAAAATTAGGTGGGCAGCAGACCAT,"Intron (Cadps2-213/Cadps2, intron 28 of 29)",6,23262773,23839137,576365,2,Cadps2-213,558110,Cadps2-213;Cadps2-205;Cadps2-212;Cadps2-201;Cadps2-209;Cadps2-206;Cadps2-211;Cadps2-207;Cadps2-202;Cadps2-210,Cadps2;Cadps2;Cadps2;Cadps2;Cadps2;Cadps2;Cadps2;Cadps2;Cadps2;Cadps2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,15,320405,ENSMUSG00000017978,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17852,cg13684235,-0.0000124,0.00000668,-1.864089514,0.063254241,loss,ns,-0.00000594,0.0000113,-0.523293392,0.601143944,neg,ns,-0.006371394,0.003323966,-1.916804971,0.056181836,neg,ns,1.25040407,0.000137634,0.000114311,1.204032419,0.22949558,pos,ns,0.847554029,Irx5,Irx5_Intergenic_upstream,8,92095170,92095219,92095218,92095219,50,-,CTTTTTAATCAATCACCTACATAATCAAATGTCACTGGCTATCTGCTCCG,Distal Intergenic,8,92357625,92376286,18662,1,Irx5-202,-262455,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,30,54352,ENSMUSG00000031737,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10558,cg09035699,-0.00000405,0.0000037,-1.094610466,0.274537078,loss,ns,-0.00000329,0.00000629,-0.52324949,0.601174455,neg,ns,-0.000952795,0.001842489,-0.517123817,0.605438488,neg,ns,0.217929974,-0.00000152,0.0000634,-0.024059867,0.980820335,neg,ns,0.912878886,Acsl6,Acsl6_Exon,11,54337089,54337138,54337137,54337138,50,+,TGTGCGGATGTGCACATTTCCTATTTGCCTTTAGCACACATGTTTGAGCG,"Exon (Acsl6-209/Acsl6, exon 11 of 21)",11,54303798,54364756,60959,1,Acsl6-204,33291,Acsl6-204;Acsl6-201;Acsl6-209;Acsl6-210;Acsl6-203;Acsl6-206;Acsl6-207;Acsl6-202;Acsl6-208;Acsl6-205;Acsl6-215;Acsl6-211,Acsl6;Acsl6;Acsl6;Acsl6;Acsl6;Acsl6;Acsl6;Acsl6;Acsl6;Acsl6;Acsl6;Acsl6,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,216739,ENSMUSG00000020333,conserved gene but different region,11,54337084,54337226,143,*,143,10,0.615384615,0.752631579,0.06993007,0.00000182,CpGisland,TRUE,NA,NRS
5573,cg13420273,-0.00000857,0.00000314,-2.73245647,0.006647021,loss,ns,0.00000279,0.00000533,0.523193394,0.601213441,pos,ns,-0.002889903,0.001561278,-1.850985563,0.065122686,neg,ns,1.186267693,0.0000678,0.0000537,1.26255888,0.207696676,pos,ns,0.942496262,Hdac9,Hdac9_Intron,12,34279139,34279188,34279187,34279188,50,-,AATGACAACTCAAAAGCCGCAGAAGCGTTTGAAGCTGGGAGCTGATGACG,"Intron (Hdac9-205/Hdac9, intron 15 of 24)",12,34047580,34528328,480749,2,Hdac9-205,249140,Hdac9-205;Hdac9-204;Hdac9-206;Hdac9-210;Hdac9-207,Hdac9;Hdac9;Hdac9;Hdac9;Hdac9,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,19,31,79221,ENSMUSG00000004698,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25216,cg02172395,-0.0000025,0.00000107,-2.335706939,0.02014396,loss,ns,0.000000952,0.00000182,0.523094336,0.601282288,pos,ns,-0.000220599,0.000533054,-0.413840985,0.67927673,neg,ns,0.167953263,-0.0000141,0.0000183,-0.770342112,0.441683643,neg,ns,0.031191569,Arid1a,Arid1a_Intron,4,133751605,133751654,133751605,133751606,50,-,CGATAGTTTGGGTTATCACTGGCAGAAAAGCAGAGTGTAAAAGTTTATGA,"Intron (Arid1a-202/Arid1a, intron 1 of 19)",4,133679008,133753611,74604,2,Arid1a-202,1957,Arid1a-202;Arid1a-205;Arid1a-201;Arid1a-203,Arid1a;Arid1a;Arid1a;Arid1a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,31,93760,ENSMUSG00000007880,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
12214,cg21858368,-0.00000902,0.00000633,-1.424655832,0.155262629,loss,ns,-0.00000563,0.0000108,-0.523059093,0.601306784,neg,ns,-0.008118679,0.003151464,-2.576161555,0.010453092,neg,ns,1.980755218,0.000271271,0.000108379,2.502992059,0.012829109,pos,ns,0.915730697,Iqch,Iqch_Intron,9,63488941,63488990,63488989,63488990,50,+,GCTGAAAGCGGCAAAGACAATTTTCCCTCGATAGCTAATGGCCCATTTCG,"Intron (Gm16759-204/Gm16759-204, intron 3 of 3)",9,63421455,63602493,181039,2,Iqch-201,113503,Iqch-201;Iqch-203;Iqch-204;Iqch-202;Iqch-206,Iqch;Iqch;Iqch;Iqch;Iqch,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,22,78250,ENSMUSG00000037801,mapped to different genes,9,63488949,63489120,172,*,172,10,0.48255814,0.99883856,0.058139535,0.00000923,CpGisland,TRUE,U15,NS
5461,cg26073104,-0.00000871,0.00000339,-2.56458295,0.010800711,loss,ns,0.00000302,0.00000577,0.523010008,0.601340901,pos,ns,0.0000529,0.001689551,0.031294089,0.975055143,pos,ns,0.010970823,-0.0000062,0.0000581,-0.106779504,0.915032976,neg,ns,0.878008044,Kalrn,Kalrn_Exon,16,34014052,34014101,34014100,34014101,50,-,GGTCGCTGGCAGGCTGGTACACCAGACACATGTTCTGCTGGTTGACGGCG,"Exon (Kalrn-212/Kalrn, exon 16 of 27)",16,33969073,34095987,126915,2,Kalrn-212,81886,Kalrn-212;Kalrn-201;Kalrn-220;Kalrn-209;Kalrn-211;Kalrn-217;Kalrn-210;Kalrn-221,Kalrn;Kalrn;Kalrn;Kalrn;Kalrn;Kalrn;Kalrn;Kalrn,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,18,22,545156,ENSMUSG00000061751,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24254,cg12005591,-0.000025,0.0000109,-2.300345124,0.022092462,loss,ns,-0.00000965,0.0000185,-0.522726624,0.601537885,neg,ns,-0.013851571,0.005409958,-2.560384228,0.010929295,neg,ns,1.961407837,0.000392826,0.000186048,2.111425387,0.03553586,pos,ns,0.538592621,Pou3f1,Pou3f1_Intergenic_upstream,4,124360391,124360440,124360391,124360392,50,-,CGCATTGTAGCAGGATTTCCCAAGAATAAAAAAGCAGGTGCCGTCAATGG,Distal Intergenic,4,124656807,124660655,3849,1,Pou3f1-201,-296416,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,24,85,18991,ENSMUSG00000090125,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9452,cg06821993,0.0000353,0.00000448,7.885967542,5.38E-14,gain,yes,-0.00000397,0.0000076,-0.522665249,0.601580553,neg,ns,0.002498644,0.002227637,1.121657019,0.26287637,pos,ns,0.58024845,0.0000683,0.0000766,0.891833677,0.373173794,pos,ns,0.094828061,Csmd3,Csmd3_Exon,15,48791784,48791833,48791832,48791833,50,-,TAATCCCCATTTTCTTCATCAGGATGAAGTCTAGGCGGCCACATTTAGCG,Promoter (<=1kb),15,47580637,48791933,1211297,2,Csmd3-204,100,Csmd3-204;Csmd3-201;Csmd3-209;Csmd3-205;Csmd3-203,Csmd3;Csmd3;Csmd3;Csmd3;Csmd3,0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,16,239420,ENSMUSG00000022311,conserved gene and region,15,48791819,48792094,276,*,276,17,0.550724638,0.814583333,0.061594203,8.17E-10,CpGisland,TRUE,U13,Hc-P
3913,cg08152447,0.0000852,0.00000933,9.133953903,8.80E-18,gain,yes,0.00000828,0.0000158,0.522545527,0.601663784,pos,ns,0.014615712,0.004643299,3.147699982,0.001805663,pos,ns,2.743363408,-0.0000772,0.000159683,-0.483658128,0.628969971,neg,ns,0.071923455,Celf4,Celf4_Exon,18,25753451,25753500,25753499,25753500,50,-,CCCAATGAACAGCTTGATGGCATCGTGGTCCTTCATGGGAATGGTCGACG,Promoter (<=1kb),18,25477632,25753983,276352,2,Celf4-202,483,Celf4-202;Celf4-201;Celf4-203;Celf4-207;Celf4-206;Celf4-209;Celf4-205,Celf4;Celf4;Celf4;Celf4;Celf4;Celf4;Celf4,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,31,59,108013,ENSMUSG00000024268,conserved gene and region,18,25753376,25753608,233,*,233,18,0.592274678,0.882575758,0.077253219,5.03E-12,CpGisland,TRUE,U3,Pr-B
15957,cg24473684,0.0000023,0.00000135,1.703203626,0.089532221,gain,ns,-0.0000012,0.0000023,-0.522544363,0.601664594,neg,ns,-0.000793449,0.000672975,-1.179016917,0.239295551,neg,ns,0.621065376,-0.0000021,0.0000231,-0.090712719,0.927779449,neg,ns,0.970968104,Gm50421,Gm50421_Intergenic_downstream,18,84002949,84002998,84002949,84002950,50,+,CGACAACAAAAGAGGGCACGTAGGAGTCAGCTCATTAGAATATCTGTGGC,Distal Intergenic,18,83987995,83988085,91,1,Gm50421-201,14954,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23978,cg17265179,-0.00000331,0.00000213,-1.552414456,0.121583369,loss,ns,0.00000189,0.00000362,0.522522219,0.60167999,pos,ns,0.002150836,0.001061972,2.025322139,0.043690876,pos,ns,1.359609247,-0.0000836,0.0000365,-2.288867445,0.022759376,neg,ns,0.952390881,Vipr1,Vipr1_Exon,9,121664641,121664690,121664641,121664642,50,-,CGGAAGTACTTCTGGGGGTACATACTCATCGGCTGGGGTATGGTACCAGG,"Exon (Vipr1-201/Vipr1, exon 7 of 13)",9,121642716,121672954,30239,1,Vipr1-201,21925,Vipr1-201;Vipr1-203;Vipr1-202;Vipr1-204,Vipr1;Vipr1;Vipr1;Vipr1,0;21590;0;-4023,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,22354,ENSMUSG00000032528,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22157,cg19761498,-0.00000548,0.00000137,-3.990021278,0.0000825,loss,ns,-0.00000122,0.00000233,-0.522494245,0.601699438,neg,ns,-0.000173997,0.000683922,-0.254410053,0.79934746,neg,ns,0.097264401,0.0000178,0.0000235,0.755552047,0.450491506,pos,ns,0.953139941,Wdr59,Wdr59_Exon,8,111462174,111462223,111462174,111462175,50,-,CGCCCAAATGGATGTCGAGCCCAGGGTGTTTCCAAATCTGGGTCAGATTT,"Exon (Wdr59-202/Wdr59, exon 21 of 26)",8,111448797,111522092,73296,2,Wdr59-202,59869,Wdr59-202;Wdr59-201;Wdr59-203,Wdr59;Wdr59;Wdr59,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,319481,ENSMUSG00000031959,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24208,cg00640107,-0.00000213,0.00000115,-1.851075106,0.065109765,loss,ns,-0.00000102,0.00000196,-0.522417578,0.601752742,neg,ns,0.000354063,0.00057317,0.617727157,0.537208719,pos,ns,0.269856947,-0.00003,0.0000197,-1.524364602,0.128437151,neg,ns,0.961233675,Macf1,Macf1_Exon,4,123441621,123441670,123441621,123441622,50,+,CGTTTACACTGCCTACAGAGCTTCCTACAGAGGGCAGTATGGAACCTGAG,"Exon (Macf1-203/Macf1, exon 52 of 98)",4,123349633,123684360,334728,2,Macf1-203,242690,Macf1-203;Macf1-209;Macf1-215;Macf1-218;Macf1-217;Macf1-201;Macf1-205;Macf1-202;Macf1-206,Macf1;Macf1;Macf1;Macf1;Macf1;Macf1;Macf1;Macf1;Macf1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,16,11426,ENSMUSG00000028649,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17872,cg25709478,-0.0000921,0.0000186,-4.96590019,0.00000113,loss,yes,-0.0000165,0.0000315,-0.522240314,0.601875997,neg,ns,-0.03031636,0.009233344,-3.283356585,0.00114306,neg,ns,2.941930901,0.000780908,0.000317534,2.459289064,0.014467181,pos,ns,0.793970288,Phf21a,Phf21a_Intron,2,92205155,92205204,92205155,92205156,50,-,CGTTATTTATAAGGTGGAAGTAAAATAGGGTGCCTAATGGGACCCCATGC,"Intron (Phf21a-201/Phf21a, intron 1 of 15)",2,92093117,92364666,271550,1,Phf21a-201,112038,Phf21a-201;Phf21a-202;Phf21a-204;Phf21a-209;Phf21a-208;Phf21a-207;Phf21a-212;Phf21a-219;Phf21a-206;Phf21a-216;Phf21a-221;Phf21a-220;Phf21a-210;Phf21a-205;Phf21a-211,Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,21,192285,ENSMUSG00000058318,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27917,cg14019317,0.0000319,0.00000392,8.147645154,9.22E-15,gain,yes,-0.00000347,0.00000665,-0.522217738,0.601891695,neg,ns,0.001988656,0.001949461,1.020105408,0.308473904,pos,ns,0.510781571,-0.0000784,0.000067,-1.170044555,0.24288178,neg,ns,0.037796885,Prox1,Prox1_fiveUTR,1,190170690,190170739,190170690,190170691,50,-,CGCTCCACAACAAGATTTACTTTAAGACACAGCTGAAGGAAACAGGAAGA,Promoter (<=1kb),1,190118035,190170714,52680,2,Prox1-202,0,Prox1-202;Prox1-201;Prox1-203,Prox1;Prox1;Prox1,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,59,19130,ENSMUSG00000010175,mapped to different genes,1,190170362,190170691,330,*,330,34,0.696969697,0.952380952,0.103030303,1.26E-26,CpGisland,TRUE,U1,Pr-A
20354,cg04578922,0.0000551,0.00000462,11.92719181,3.02E-27,gain,yes,0.0000041,0.00000785,0.522116287,0.601962241,pos,ns,0.006947124,0.002300682,3.019593529,0.002741516,pos,ns,2.562009249,-0.000203997,0.0000791,-2.578310406,0.01038969,neg,ns,0.066437164,Hoxc5,Hoxc5_Intron,15,103010029,103010078,103010077,103010078,50,+,TAAATTAAATAAACTGAACTGGCTTTATGACCGGCTTCCCTAGAAGAACG,"Intron (Hoxc5-202/Hoxc5, intron 1 of 1)",15,102967443,103015676,48234,1,Hoxc5-202,42586,Hoxc5-202;Hoxc5-201;Hoxc6-202;Hoxc6-203;Hoxc6-201,Hoxc5;Hoxc5;Hoxc6;Hoxc6;Hoxc6,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,46,134,15424,ENSMUSG00000022485,mapped to different genes,15,103009987,103010218,232,*,232,17,0.556034483,0.969041769,0.073275862,5.22E-11,CpGisland,TRUE,U13,Hc-P
6209,cg03760813,-0.000121757,0.0000127,-9.617913505,2.47E-19,loss,yes,0.0000112,0.0000215,0.522026214,0.602024879,pos,ns,-0.018130115,0.006300732,-2.877461953,0.004287149,neg,ns,2.367831385,0.0000597,0.000216682,0.275536859,0.783087384,pos,ns,0.741446941,Gm9211,Gm9211_Intergenic_downstream,7,36331554,36331603,36331554,36331555,50,-,CGTAGTCCTGGAATGAATTTTGGCAGACCTGATGCAATTTAGCAGCTTGG,Distal Intergenic,7,36234292,36235266,975,1,Gm9211-201,97311,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,12,15,668507,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23349,cg21610620,-0.0000333,0.00000696,-4.780477301,0.00000271,loss,ns,0.00000617,0.0000118,0.521919842,0.602098854,pos,ns,-0.008129748,0.003464126,-2.346839494,0.019562548,neg,ns,1.708574575,0.000208405,0.000119131,1.7493744,0.081215901,pos,ns,0.817239703,Pgs1,Pgs1_Exon,11,118014609,118014658,118014657,118014658,50,+,TGTCTCACGCTGATTGGCTCTCCTAATTTTGGGTACAGGTCAGTTCACCG,"Exon (Pgs1-203/Pgs1, exon 8 of 10)",11,117986292,118024011,37720,1,Pgs1-203,28317,Pgs1-203;Pgs1-201;Pgs1-202;Pgs1-204,Pgs1;Pgs1;Pgs1;Pgs1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,74451,ENSMUSG00000017715,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25906,cg17055195,0.00000802,0.00000661,1.212408674,0.226279156,gain,ns,0.00000586,0.0000112,0.521894003,0.602116825,pos,ns,0.009847779,0.003291248,2.992111161,0.002993052,pos,ns,2.52388575,-0.000245098,0.000113186,-2.16545019,0.031115627,neg,ns,0.506848894,Aebp2,Aebp2_threeUTR,6,140651340,140651389,140651388,140651389,50,-,TTTGTATTTAAGCAAACAGTGAACGACGTTTGCAATCAACTAAAAATTCG,3' UTR,6,140622663,140655481,32819,1,Aebp2-201,28677,Aebp2-201;Aebp2-202;Aebp2-203;Aebp2-205;Aebp2-206;Aebp2-208;Aebp2-207;Aebp2-204,Aebp2;Aebp2;Aebp2;Aebp2;Aebp2;Aebp2;Aebp2;Aebp2,0;0;0;0;0;0;0;4523,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,3,11569,ENSMUSG00000030232,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
748,cg06056301,0.00000497,0.00000444,1.119263086,0.263894402,gain,ns,0.00000393,0.00000754,0.521762682,0.602208158,pos,ns,-0.001454691,0.002208962,-0.658540399,0.51067974,neg,ns,0.291851371,0.00012929,0.000076,1.701944773,0.089768274,pos,ns,0.015223046,Rhob,Rhob_Exon,12,8499576,8499625,8499576,8499577,50,-,CGTCTTGCCACACGCGCCGTCGCCCACCACCACCAGCTTCTTGCGGATGG,Promoter (<=1kb),12,8497661,8500009,2349,2,Rhob-201,384,Rhob-201,Rhob,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,11852,ENSMUSG00000054364,conserved gene and region,12,8499329,8500048,720,*,720,87,0.679166667,1.048824593,0.120833333,5.68E-74,CpGisland,TRUE,U1,Pr-A
21499,cg25445920,0.000051,0.00000512,9.950910711,2.00E-20,gain,yes,-0.00000454,0.0000087,-0.521732809,0.602228935,neg,ns,0.004325495,0.002548922,1.696989817,0.090702298,pos,ns,1.042381708,0.000192736,0.0000877,2.198748034,0.028634371,pos,ns,0.110102637,Bcl11b,Bcl11b_Promoter,12,108004063,108004112,108004111,108004112,50,-,ATGGCTGGGGCTGCCTCTGTACAATGGGATAAAATTCAAGTTCAAGTGCG,Promoter (<=1kb),12,107910403,108003602,93200,2,Bcl11b-201,-510,Bcl11b-201;Bcl11b-202;Bcl11b-203,Bcl11b;Bcl11b;Bcl11b,0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,8,39,58208,ENSMUSG00000048251,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
4756,cg26736844,-0.00000188,0.00000418,-0.450411974,0.65272825,loss,ns,-0.00000371,0.00000711,-0.521549964,0.602356116,neg,ns,-0.003927782,0.002081568,-1.886934501,0.060103375,neg,ns,1.221101141,0.000150667,0.0000716,2.104732801,0.036119232,pos,ns,0.067486891,Ier5l,Ier5l_Intergenic_downstream,2,30470743,30470792,30470791,30470792,50,+,CATTCTCCCACTCTGAGGTCATTCCGTAGGTGGTCAGAGGGGAGCGCGCG,Downstream (<1kb),2,30471537,30474219,2683,2,Ier5l-201,3427,Ier5l-201,Ier5l,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,6,13,72500,ENSMUSG00000089762,conserved gene and region,2,30470658,30470883,226,*,226,15,0.646017699,0.664184953,0.066371681,3.62E-09,CpGisland,TRUE,U3,Pr-B
6493,cg04916354,-0.00000482,0.00000433,-1.113151157,0.266505913,loss,ns,-0.00000384,0.00000736,-0.521547814,0.602357611,neg,ns,-0.001400073,0.002157171,-0.649032099,0.516798168,neg,ns,0.286679034,0.0000212,0.0000742,0.286445373,0.774728366,pos,ns,0.903126396,Zfp536,Zfp536_Intron,7,37515083,37515132,37515131,37515132,50,-,CACCCAGAGGGGATTTATTTCCTTACTCCAGAGCAACATAACACCATCCG,"Intron (Zfp536-211/Zfp536, intron 1 of 3)",7,37318024,37568390,250367,2,Zfp536-211,53258,Zfp536-211;Zfp536-202;Zfp536-201;Zfp536-203;Zfp536-206,Zfp536;Zfp536;Zfp536;Zfp536;Zfp536,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,73,112,243937,ENSMUSG00000043456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4246,cg22825316,-0.0000453,0.00000908,-4.985116442,0.00000103,loss,yes,-0.00000805,0.0000154,-0.521522918,0.602374929,neg,ns,-0.004747333,0.004519666,-1.050372456,0.294365036,neg,ns,0.531113776,0.000113438,0.000155431,0.729829049,0.466045804,pos,ns,0.91309428,Rfx3,Rfx3_Intron,19,27904828,27904877,27904876,27904877,50,+,TTGACAAAGGACCTTTTTATTCTGGCTAATTAAGCAGTTGGACACACCCG,"Intron (Rfx3-202/Rfx3, intron 2 of 17)",19,27761721,27982948,221228,2,Rfx3-202,78071,Rfx3-202;Rfx3-201;Rfx3-208;Rfx3-204;Rfx3-206;Rfx3-205;Rfx3-207,Rfx3;Rfx3;Rfx3;Rfx3;Rfx3;Rfx3;Rfx3,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,15,19726,ENSMUSG00000040929,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10402,cg09013001,0.0000716,0.0000161,4.442615588,0.0000124,gain,ns,-0.0000143,0.0000274,-0.521357726,0.602489843,neg,ns,0.023561777,0.008020631,2.93764623,0.003555087,pos,ns,2.449149791,-0.00068213,0.000275829,-2.473019546,0.013933612,neg,ns,0.364389931,Snx24,Snx24_Intron,18,53361886,53361935,53361886,53361887,50,-,CGTGCAAGAAGACGATGAATTGTTTACTTGCATAAAATAACCTTTCAATA,"Intron (Snx24-202/Snx24, intron 3 of 6)",18,53245662,53390920,145259,1,Snx24-202,116224,Snx24-202;Snx24-201,Snx24;Snx24,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,7,69226,ENSMUSG00000024535,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20618,cg10276283,-0.0000115,0.00000592,-1.944111184,0.052786502,loss,ns,0.00000524,0.0000101,0.521255103,0.602561236,pos,ns,0.001954015,0.002946534,0.663157024,0.507722801,pos,ns,0.294373333,-0.000127069,0.000101331,-1.253999538,0.210786955,neg,ns,0.895619335,Rsbn1,Rsbn1_threeUTR,3,103960128,103960177,103960128,103960129,50,-,CGGCTGCTGTTGGAGTTTTGAAAGCTGTACAATTTGGTGAATGGTGAGTT,3' UTR,3,103914120,103966613,52494,1,Rsbn1-201,46008,Rsbn1-201;Rsbn1-202;Rsbn1-203;Rsbn1-204,Rsbn1;Rsbn1;Rsbn1;Rsbn1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,16,229675,ENSMUSG00000044098,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13554,cg11718387,-0.0000156,0.0000106,-1.476491179,0.140827154,loss,ns,-0.00000938,0.000018,-0.521243484,0.602569319,neg,ns,0.003553422,0.00526966,0.674317151,0.500612231,pos,ns,0.300498544,-0.000056,0.000181223,-0.30877647,0.757698975,neg,ns,0.708922607,Gm47811,Gm47811_Intergenic_downstream,13,71301587,71301636,71301635,71301636,50,-,CTCTGAAATGGGTTTTGTATTGATTTTTGTAACTACCCTGTTAGATGACG,Distal Intergenic,13,71624610,71624974,365,2,Gm47811-201,323387,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18217,cg16388536,-0.00000278,0.00000138,-2.017330479,0.044522585,loss,ns,-0.00000122,0.00000234,-0.5212271,0.602580718,neg,ns,-0.000505598,0.000686524,-0.736461108,0.462007066,neg,ns,0.335351383,0.00000168,0.0000236,0.071001535,0.943442316,pos,ns,0.969728139,Ap3b1,Ap3b1_Intron,13,94511504,94511553,94511504,94511505,50,-,CGAGAGACATTTCAGGGAAATTGAACTGTCAGTGGGTAGAAACAAGCATT,"Intron (Ap3b1-201/Ap3b1, intron 22 of 26)",13,94358960,94566317,207358,1,Ap3b1-201,152544,Ap3b1-201;Ap3b1-205,Ap3b1;Ap3b1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,55,11774,ENSMUSG00000021686,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24279,cg19145110,0.00000456,0.0000029,1.574374871,0.116420786,gain,ns,0.00000257,0.00000493,0.521205623,0.60259566,pos,ns,0.004040419,0.001442937,2.800136222,0.005428689,pos,ns,2.265305034,-0.000127983,0.0000496,-2.579126151,0.010365712,neg,ns,0.925839458,Pou3f1,Pou3f1_Intron,4,124465542,124465591,124465590,124465591,50,+,TAAATTGCTCCTTGTCCAATGACTATGGCGAGATGCTTAATTCAAAGGCG,"Intron (1700057H15Rik-202/1700057H15Rik-202, intron 2 of 3)",4,124656807,124660655,3849,1,Pou3f1-201,-191216,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,43,85,18991,ENSMUSG00000090125,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19432,cg22160425,-0.00000353,0.00000322,-1.0977788,0.273153028,loss,ns,0.00000285,0.00000547,0.521199475,0.602599938,pos,ns,-0.001038504,0.001601407,-0.648494657,0.517145139,neg,ns,0.286387553,-0.00000196,0.0000551,-0.03558423,0.971636785,neg,ns,0.943900212,Gm12689,Gm12689_Intergenic_downstream,4,99304608,99304657,99304656,99304657,50,+,CATTAGTACTGCAAAGTTTTATTTCAAATGGCTGAGCTTGCTGTACCCCG,Distal Intergenic,4,99295900,99297258,1359,1,Gm12689-201,8708,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,12,26,100137011,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19345,cg24395075,-0.0000306,0.00000687,-4.451905326,0.0000119,loss,ns,0.00000609,0.0000117,0.521152496,0.602632622,pos,ns,-0.001392336,0.003420753,-0.407026273,0.684269584,neg,ns,0.164772764,0.0000171,0.000117639,0.145255189,0.88460379,pos,ns,0.905695394,Foxp1,Foxp1_Intron,6,99064352,99064401,99064400,99064401,50,-,CCTTTAGACAATTACTTGCAGAGCTGTCTGCAGGCTTTGAGTAATACCCG,"Intron (Foxp1-206/Foxp1, intron 4 of 17)",6,98925338,99266515,341178,2,Foxp1-206,202114,Foxp1-206;Foxp1-204;Foxp1-220;Foxp1-201;Foxp1-205;Foxp1-207;Foxp1-208;Foxp1-226;Foxp1-228;Foxp1-221;Foxp1-222;Foxp1-218,Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,87,108655,ENSMUSG00000030067,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4344,cg15178535,-0.000000632,0.0000023,-0.275053435,0.783458415,loss,ns,-0.00000203,0.0000039,-0.52114307,0.60263918,neg,ns,0.000741588,0.001142865,0.648884703,0.516893315,pos,ns,0.286599085,-0.0000592,0.0000393,-1.506332568,0.133000106,neg,ns,0.953872083,Fscn3,Fscn3_Exon,6,28435994,28436043,28436042,28436043,50,+,CCAGCACAGGGGGGATCCTTCTGGTCAATAACATCCTTTGGCACCTTTCG,"Exon (Fscn3-201/Fscn3, exon 6 of 7)",6,28427789,28438622,10834,1,Fscn3-201,8205,Fscn3-201;Fscn3-202,Fscn3;Fscn3,0;2030,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,56223,ENSMUSG00000029707,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15948,cg23885292,-0.00000773,0.00000374,-2.070059221,0.039274661,loss,ns,0.00000331,0.00000635,0.52113691,0.602643466,pos,ns,-0.001087765,0.001859036,-0.585123001,0.558890668,neg,ns,0.252673142,-0.0000546,0.0000639,-0.853563794,0.394005784,neg,ns,0.905067388,Gm50420,Gm50420_Intergenic_downstream,18,83944647,83944696,83944695,83944696,50,-,AAATAGAAATCAGCATTGATTAAAAGCCCCAGATAGACCATCCAATACCG,Distal Intergenic,18,83905796,83905942,147,1,Gm50420-201,38900,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,9,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8501,cg03291757,0.0000821,0.00000657,12.50371531,2.53E-29,gain,yes,-0.00000581,0.0000112,-0.521133159,0.602646076,neg,ns,0.009488424,0.003267589,2.903799194,0.003951359,pos,ns,2.403253527,0.0000637,0.000112372,0.567196539,0.570991145,pos,ns,0.125201264,Lbx1,Lbx1_Intergenic_downstream,19,45231313,45231362,45231361,45231362,50,+,AATTGTCTACAAATTGTGAAGAAAATTCAAAAACCATATGGTCGCCAGCG,Downstream (1-2kb),19,45232684,45235812,3129,2,Lbx1-201,4450,Lbx1-201,Lbx1,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,30,50,16814,ENSMUSG00000025216,mapped to different genes,19,45231355,45231647,293,*,293,33,0.689419795,0.96381579,0.112627986,3.07E-27,CpGisland,TRUE,NA,NRS
21744,cg19420902,-0.00000285,0.00000347,-0.821163585,0.412184137,loss,ns,0.00000307,0.0000059,0.521129031,0.602648948,pos,ns,-0.000983738,0.001727253,-0.569538892,0.569402947,neg,ns,0.24458029,-0.0000401,0.0000594,-0.675056366,0.500143127,neg,ns,0.939205059,Zfhx3,Zfhx3_Exon,8,108956348,108956397,108956348,108956349,50,-,CGGACTCCCTCTACGACCCCTTCATTGTTCCAAAGGTGCAGTACAAGTTG,"Exon (Zfhx3-204/Zfhx3, exon 16 of 16)",8,107942644,108961630,1018987,1,Zfhx3-204,1013704,Zfhx3-204;Zfhx3-201,Zfhx3;Zfhx3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,46,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16258,cg16024222,0.000123122,0.0000155,7.921677246,4.24E-14,gain,yes,-0.0000138,0.0000264,-0.521019888,0.602724886,neg,ns,0.015701242,0.007735619,2.0297332,0.043237481,pos,ns,1.364139613,-0.00032237,0.000266027,-1.211792524,0.226514646,neg,ns,0.089001413,Bnc2,Bnc2_fiveUTR,4,84674985,84675034,84675033,84675034,50,+,TGCTGGTTGTCAAGTGCAGCCCCCGCCTCTTGGTCTCCTCTTAGCGGCCG,Promoter (<=1kb),4,84275095,84675034,399940,2,Bnc2-201,0,Bnc2-201;Bnc2-202;Bnc2-214;Bnc2-215;Bnc2-206;Bnc2-211;Bnc2-217;Bnc2-207;Bnc2-203;Bnc2-209;Bnc2-204;Bnc2-210,Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,8,91,242509,ENSMUSG00000028487,conserved gene and region,4,84674836,84675874,1039,*,1039,124,0.716073147,0.931064137,0.119345525,2.14E-104,CpGisland,TRUE,U3,Pr-B
19250,cg19693151,-0.0000205,0.00000516,-3.973558854,0.0000881,loss,ns,-0.00000456,0.00000876,-0.520983597,0.602750138,neg,ns,-0.000421756,0.002566645,-0.164321952,0.86958479,neg,ns,0.060688065,-0.0000786,0.0000883,-0.890928816,0.373658301,neg,ns,0.870059454,Wnt11,Wnt11_threeUTR,7,98847343,98847392,98847343,98847344,50,-,CGGGCTCCTCATGGGGGCCAAGTTTTCCGATGCTCCTATGAAGGTGAAAA,3' UTR,7,98835112,98853811,18700,1,Wnt11-202,12231,Wnt11-203;Wnt11-202;Wnt11-201;Wnt11-205;Wnt11-204;Wnt11-206,Wnt11;Wnt11;Wnt11;Wnt11;Wnt11;Wnt11,12231;0;0;0;0;-414,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,6,22411,ENSMUSG00000015957,conserved gene but different region,7,98847156,98847371,216,*,216,17,0.689814815,0.675,0.078703704,1.63E-11,CpGisland,TRUE,U11,Tr-P
25871,cg21752606,0.00000664,0.00000499,1.330472721,0.184340441,gain,ns,-0.00000442,0.00000848,-0.520800523,0.602877528,neg,ns,0.000189716,0.002484823,0.076349976,0.939189917,pos,ns,0.027246578,-0.0000686,0.0000855,-0.802948255,0.422619824,neg,ns,0.886727425,Morc4,Morc4_Intron,X,139835424,139835473,139835424,139835425,50,+,CGGCCAACCTTACTGCACCCTTCAGCGTCCGGAGCTGGGCAACCATGTCC,"Intron (Morc4-201/Morc4, intron 13 of 15)",20,139821632,139871654,50023,2,Morc4-201,36181,Morc4-201;Morc4-204;Morc4-202;Morc4-210;Morc4-208,Morc4;Morc4;Morc4;Morc4;Morc4,0;0;0;0;19465,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,7,75746,ENSMUSG00000031434,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7418,cg27496468,0.0000887,0.00000524,16.92382002,5.82E-46,gain,yes,-0.00000464,0.00000891,-0.520629444,0.602996581,neg,ns,0.006858194,0.002609921,2.627739889,0.009023083,pos,ns,2.044645069,0.000151777,0.0000898,1.691017206,0.091838577,pos,ns,0.099896495,Nr2e1,Nr2e1_Intron,10,42579761,42579810,42579809,42579810,50,+,TGCCTATAGAGCCACCAGTGACCCGTCAAAAAGAGTAGCATGGGAATTCG,"Intron (Nr2e1-201/Nr2e1, intron 1 of 8)",10,42561963,42583632,21670,2,Nr2e1-201,3822,Nr2e1-201;Nr2e1-203;Nr2e1-204;Ostm1-204;Ostm1-202;Ostm1-203,Nr2e1;Nr2e1;Nr2e1;Ostm1;Ostm1;Ostm1,0;0;0;-4012;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,11,21907,ENSMUSG00000019803,conserved gene and region,10,42579451,42579891,441,*,441,35,0.68707483,0.680555556,0.079365079,2.77E-23,CpGisland,TRUE,U3,Pr-B
15455,cg13612893,0.0000644,0.0000112,5.742179736,2.23E-08,gain,yes,-0.00000992,0.0000191,-0.520608207,0.603011361,neg,ns,0.020729539,0.005585116,3.711568134,0.000244121,pos,ns,3.612394416,-0.000687019,0.000192072,-3.576886641,0.000403263,neg,ns,0.381006562,Srsf5,Srsf5_Exon,12,80948329,80948378,80948329,80948330,50,-,CGTTGATAACGTGATCTGATCCCTAAGTTGAGACCTGTCTTCCTGTAACG,"Exon (Srsf5-207/Srsf5, exon 5 of 7)",12,80945504,80950507,5004,1,Srsf5-201,2825,Slc10a1-202;Slc10a1-201;Srsf5-201;Srsf5-204;Srsf5-207;Srsf5-202;Srsf5-203;Srsf5-212;Srsf5-211;Srsf5-206;Srsf5-208;Srsf5-210;Srsf5-205;Srsf5-209,Slc10a1;Slc10a1;Srsf5;Srsf5;Srsf5;Srsf5;Srsf5;Srsf5;Srsf5;Srsf5;Srsf5;Srsf5;Srsf5;Srsf5,20327;19701;0;0;0;0;0;0;2795;0;2759;2750;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,10,20384,ENSMUSG00000021134,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6011,cg25409348,0.000131111,0.0000213,6.153780444,2.34E-09,gain,yes,0.0000188,0.0000362,0.520337851,0.603199526,pos,ns,0.032998587,0.010604064,3.11188104,0.002032112,pos,ns,2.692052395,-0.000619108,0.000364673,-1.69770763,0.090566504,neg,ns,0.361591253,Cxxc5,Cxxc5_Intron,18,35849641,35849690,35849689,35849690,50,-,CGGCTCCTCTCCAGGCGCCCAGCTGTGGCATCTGTCAAGGTCAGATAGCG,"Intron (Gm50371-201/Gm50371-201, intron 4 of 4)",18,35829397,35859002,29606,1,Cxxc5-202,20244,Cxxc5-202;Cxxc5-201;Cxxc5-206;Cxxc5-203;Cxxc5-204,Cxxc5;Cxxc5;Cxxc5;Cxxc5;Cxxc5,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,49,67393,ENSMUSG00000046668,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
18565,cg18684142,0.00000704,0.00000291,2.417597825,0.016199899,gain,ns,-0.00000257,0.00000495,-0.52023346,0.603272188,neg,ns,0.000589563,0.001449349,0.40677797,0.684451769,pos,ns,0.16465715,0.00000478,0.0000498,0.095944751,0.923626445,pos,ns,0.048308287,Hoxb6,Hoxb6_Promoter,11,96292387,96292436,96292435,96292436,50,+,ATGAGTGGTTGAATCCAGCGATTGGCCGGCGCCGGTCATGTGGCCGGGCG,Promoter (<=1kb),11,96292476,96301569,9094,1,Hoxb6-202,-40,Hoxb6-202;Hoxb7-201;Hoxb7-202,Hoxb6;Hoxb7;Hoxb7,0;0;3672,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,5,16,15414,ENSMUSG00000000690,mapped to different genes,11,96292405,96292440,36,*,36,7,0.75,1.431818182,0.194444444,0.000000102,CpGisland,TRUE,U13,Hc-P
4906,cg09108310,-0.00000276,0.00000131,-2.110944195,0.035577533,loss,ns,0.00000115,0.00000222,0.520155021,0.603326788,pos,ns,0.000758656,0.00065045,1.166356639,0.244366787,pos,ns,0.611957822,-0.0000219,0.0000224,-0.980730004,0.327490663,neg,ns,0.03129619,Gm13835,Gm13835_Intron,6,31217611,31217660,31217659,31217660,50,-,CTGTTTACCTCAAGTTTGAATTTTATCTGCGCAACATTAGCTGGAATGCG,"Intron (Lncpint-204/Lncpint-204, intron 1 of 3)",6,31141979,31142663,685,2,Gm13835-201,-74997,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,4,100038973,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
10759,cg15840551,0.00000618,0.00000129,4.774796585,0.00000278,gain,ns,0.00000114,0.0000022,0.519994658,0.603438423,pos,ns,0.000733597,0.000643725,1.139613071,0.255327318,pos,ns,0.592902717,-0.0000116,0.0000221,-0.523611319,0.600923016,neg,ns,0.024494728,Jph4,Jph4_fiveUTR,14,55115239,55115288,55115287,55115288,50,+,CCCGTCGTCAAAGTCGAACTTGCCCCCGGGGGACATGCATGTAGTTGGCG,5' UTR,14,55106826,55116935,10110,2,Jph4-201,1647,Jph4-201;Jph4-202;Jph4-203;Jph4-204,Jph4;Jph4;Jph4;Jph4,0;0;-4681;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,11,319984,ENSMUSG00000022208,conserved gene and region,14,55114804,55115549,746,*,746,72,0.71849866,0.747869674,0.096514745,1.44E-53,CpGisland,TRUE,U3,Pr-B
1873,cg27101484,0.0000417,0.00000931,4.485036198,0.0000103,gain,ns,0.00000822,0.0000158,0.519930276,0.603483243,pos,ns,-0.002739464,0.004632655,-0.591337755,0.554725076,neg,ns,0.255922202,0.000337467,0.000159317,2.118213739,0.034952411,pos,ns,0.579041194,Psat1,Psat1_Intron,19,15803386,15803435,15803386,15803387,50,-,CGTGCTTGGTGGAGAGATGGATTTCCTTGTTAGGAGCTAAGCACAGGATT,"Intron (Gm50348-201/Gm50348-201, intron 1 of 1)",19,15905130,15909712,4583,2,Psat1-204,106326,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,17,107272,ENSMUSG00000024640,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7926,cg20733004,0.0000316,0.00000682,4.6310071,0.00000536,gain,ns,0.00000602,0.0000116,0.519882591,0.603516441,pos,ns,0.002302123,0.003394413,0.678209593,0.498144735,pos,ns,0.302644456,-0.000057,0.000116734,-0.488482476,0.625553497,neg,ns,0.793256444,Hif1an,Hif1an_Intron,19,44633810,44633859,44633810,44633811,50,-,CGGTGTGGTGACACTCTGTGCTCCCAGATGTGGTGGCAGCGATAATTCCA,"Intron (Gm35460-201/Gm35460-201, intron 3 of 6)",19,44562850,44563952,1103,1,Hif1an-202,71009,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,31,319594,ENSMUSG00000036450,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13361,cg08958284,0.0000283,0.00000361,7.838320359,7.38E-14,gain,yes,-0.00000319,0.00000614,-0.519834034,0.603550247,neg,ns,0.004270781,0.001797944,2.375369202,0.018139291,pos,ns,1.741379681,-0.0000545,0.0000618,-0.882192192,0.378356418,neg,ns,0.107881246,Trim9,Trim9_Exon,12,70346427,70346476,70346427,70346428,50,-,CGGGCATCTTGCATTGCACGCAGTACATGCTGTGGTTCTCCAGCTCGTGG,Promoter (<=1kb),12,70244533,70347350,102818,2,Trim9-202,874,Trim9-202;Trim9-201;Trim9-211;Trim9-209;Trim9-206;Trim9-203;Trim9-205;Trim9-210;Trim9-208,Trim9;Trim9;Trim9;Trim9;Trim9;Trim9;Trim9;Trim9;Trim9,0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,7,94090,ENSMUSG00000021071,conserved gene and region,12,70346427,70346953,527,*,527,46,0.669829222,0.803779841,0.087286528,2.41E-32,CpGisland,TRUE,U3,Pr-B
3009,cg22723207,-0.00000145,0.0000011,-1.317420948,0.188670422,loss,ns,0.000000972,0.00000187,0.519827869,0.603554539,pos,ns,0.0000527,0.000547578,0.096188048,0.923433375,pos,ns,0.034594433,0.00000834,0.0000188,0.443052793,0.658036565,pos,ns,0.968905609,Fbxl4,Fbxl4_Exon,4,22376575,22376624,22376623,22376624,50,-,GTCTTTCCCATGTTAACAGTTCTGACCATGTTTTATTATATATGCCTTCG,"Exon (Fbxl4-201/Fbxl4, exon 3 of 9)",4,22357543,22376725,19183,1,Fbxl4-202,19032,Fbxl4-202;Fbxl4-201;Fbxl4-205;Fbxl4-203;Fbxl4-204,Fbxl4;Fbxl4;Fbxl4;Fbxl4;Fbxl4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,269514,ENSMUSG00000040410,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1244,cg12075801,0.000101778,0.0000161,6.339514546,8.13E-10,gain,yes,0.0000142,0.0000273,0.519808217,0.603568222,pos,ns,0.02707263,0.007990491,3.388105872,0.000794637,pos,ns,3.099831364,-0.000771479,0.000274792,-2.807499505,0.00530917,neg,ns,0.095360433,Bcor,Bcor_Intron,X,12127922,12127971,12127922,12127923,50,-,CGCGAGAGACTTTTTAAATATTTACAGCCCGCTCTCCGCACGGTAGCCTG,"Intron (Bcor-201/Bcor, intron 1 of 13)",20,12036743,12160355,123613,2,Bcor-201,32384,Bcor-201;Bcor-207;Bcor-205;Bcor-208,Bcor;Bcor;Bcor;Bcor,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,56,74,71458,ENSMUSG00000040363,conserved gene and region,X,12127661,12128843,1183,*,1183,110,0.662721894,0.850033967,0.092983939,1.48E-79,CpGisland,TRUE,U3,Pr-B
7862,cg07278034,-0.00000908,0.0000107,-0.845297896,0.398596474,loss,ns,-0.00000949,0.0000183,-0.519789689,0.603581121,neg,ns,-0.001452768,0.005347644,-0.271664968,0.786060468,neg,ns,0.104544044,-0.00000695,0.000183905,-0.037801147,0.969870561,neg,ns,0.778204444,Gtdc1,Gtdc1_Intron,2,44570517,44570566,44570565,44570566,50,-,GAAAAACAGATACATTTTTAATGAAACAAAAACCTCAAAGCACACACTCG,"Intron (Gtdc1-203/Gtdc1, intron 9 of 10)",2,44564412,44861622,297211,2,Gtdc1-203,291056,Gtdc1-203;Gtdc1-201;Gtdc1-207;Gtdc1-208;Gtdc1-205,Gtdc1;Gtdc1;Gtdc1;Gtdc1;Gtdc1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,43,227835,ENSMUSG00000036890,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15527,cg03427564,-0.00000131,0.00000106,-1.234299067,0.218026334,loss,ns,-0.000000935,0.0000018,-0.519669933,0.603664503,neg,ns,0.000163546,0.000527234,0.310196355,0.756620077,pos,ns,0.121122139,-0.0000161,0.0000181,-0.887077687,0.375724757,neg,ns,0.022002647,Ep300,Ep300_fiveUTR,15,81586623,81586672,81586671,81586672,50,-,TTAAAAATGGCCGAGAATGTGGTGGAACCGGGGCCGCCTTCAGCCAAGCG,5' UTR,15,81585351,81588347,2997,1,Ep300-202,1272,Ep300-202;Ep300-201;Ep300-205,Ep300;Ep300;Ep300,0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,7,328572,ENSMUSG00000055024,conserved gene but different region,15,81585447,81586774,1328,*,1328,135,0.696536145,0.84178499,0.101656627,4.27E-103,CpGisland,TRUE,U1,Pr-A
15887,cg27067326,0.0000414,0.0000091,4.550105635,0.00000771,gain,ns,-0.00000804,0.0000155,-0.519572651,0.60373224,neg,ns,-0.008686428,0.004531159,-1.917043093,0.056151456,neg,ns,1.25063898,0.000124558,0.000155826,0.799341126,0.424704671,pos,ns,0.752278897,Ccdc171,Ccdc171_threeUTR,4,83742973,83743022,83743021,83743022,50,-,CTGCGTCAGCTCAATAGACATCTTACCCAGCTGGAGCAGGACAAGCGTCG,3' UTR,4,83525545,83864670,339126,1,Ccdc171-201,217428,Ccdc171-201;Ccdc171-206;Ccdc171-203;Ccdc171-205,Ccdc171;Ccdc171;Ccdc171;Ccdc171,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,9,320226,ENSMUSG00000052407,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3567,cg19376385,-0.0000902,0.00000789,-11.43305445,1.71E-25,loss,yes,-0.00000696,0.0000134,-0.519531089,0.603761181,neg,ns,0.00953529,0.003926678,2.428334995,0.015736969,pos,ns,1.803078919,-0.000274345,0.000135038,-2.031613383,0.043045443,neg,ns,0.881983134,Mms22l,Mms22l_Intron,4,24544775,24544824,24544823,24544824,50,+,GAGCTCAGTGAGCAGGGGATGACCTGCTATTCAGTCTGGGAGTAACCCCG,"Intron (Mms22l-210/Mms22l, intron 13 of 16)",4,24496451,24581338,84888,1,Mms22l-210,48324,Mms22l-210;Mms22l-202;Mms22l-201;Mms22l-207;Mms22l-204;Mms22l-208,Mms22l;Mms22l;Mms22l;Mms22l;Mms22l;Mms22l,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,212377,ENSMUSG00000045751,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15343,cg22197358,-0.000027,0.00000738,-3.65379486,0.000303324,loss,ns,0.00000651,0.0000125,0.519481797,0.603795504,pos,ns,0.007955315,0.003673176,2.165786308,0.031089682,pos,ns,1.507383719,-0.000279447,0.00012632,-2.212209527,0.027680957,neg,ns,0.619232894,Tcf3,Tcf3_Exon,10,80412880,80412929,80412928,80412929,50,+,AGCAGTTTGGTCTGGGGCTTCTCGCTGTTGAGGTGCAGTTGGCACATGCG,"Exon (Tcf3-206/Tcf3, exon 18 of 19)",10,80409514,80433637,24124,2,Tcf3-208,20708,Tcf3-208;Tcf3-209;Tcf3-206;Tcf3-207;Tcf3-201;Tcf3-210;Tcf3-205;Tcf3-202;Tcf3-204;Tcf3-214;Tcf3-203;Tcf3-212;Tcf3-211,Tcf3;Tcf3;Tcf3;Tcf3;Tcf3;Tcf3;Tcf3;Tcf3;Tcf3;Tcf3;Tcf3;Tcf3;Tcf3,0;0;0;0;0;0;0;0;0;0;0;0;3359,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,21423,ENSMUSG00000020167,conserved gene but different region,10,80412794,80413081,288,*,288,27,0.6875,0.795417349,0.09375,4.48E-20,CpGisland,TRUE,U10,Tr-S
6492,cg26178805,-0.0000248,0.0000111,-2.239154498,0.025854934,loss,ns,0.00000978,0.0000188,0.519377569,0.603868085,pos,ns,0.002135024,0.005516444,0.387029011,0.699000286,pos,ns,0.155522646,-0.000163574,0.00018971,-0.862229038,0.389227991,neg,ns,0.688572693,Msantd2,Msantd2_Exon,9,37513776,37513825,37513824,37513825,50,+,TTTAATGTTACGTGTACTGTAACCCTGGGTCTTTCTCTACATTGCTGCCG,"Exon (Msantd2-203/Msantd2, exon 3 of 3)",9,37489021,37524150,35130,1,Msantd2-209,24755,Msantd2-209;Msantd2-204;Msantd2-210;Msantd2-201;Msantd2-202;Msantd2-208;Msantd2-203;Msantd2-206;Msantd2-207,Msantd2;Msantd2;Msantd2;Msantd2;Msantd2;Msantd2;Msantd2;Msantd2;Msantd2,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,8,235184,ENSMUSG00000042138,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2761,cg25273233,0.0000345,0.00000794,4.343319997,0.000019,gain,ns,0.000007,0.0000135,0.519275667,0.603939051,pos,ns,-0.000561521,0.003950575,-0.142136404,0.887064594,neg,ns,0.052044755,-0.0000895,0.00013586,-0.659034047,0.510363128,neg,ns,0.146187281,Prdm13,Prdm13_Promoter,4,21686050,21686099,21686050,21686051,50,+,CGGCGGGACCATTAATCCTCAGCATGGGGTATTGTCCTCCAGACAGTTAC,Promoter (<=1kb),4,21677481,21685963,8483,2,Prdm13-202,-87,Prdm13-205;Prdm13-201;Prdm13-202;Prdm13-203;Prdm13-206;Prdm13-204,Prdm13;Prdm13;Prdm13;Prdm13;Prdm13;Prdm13,0;0;0;0;0;-205,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,19,23,230025,ENSMUSG00000040478,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
27782,cg01193422,0.000136352,0.0000254,5.360712095,0.000000162,gain,yes,0.0000224,0.0000432,0.519225375,0.603974076,pos,ns,0.021239506,0.012659483,1.677754664,0.094402858,pos,ns,1.025014858,-0.000142705,0.000435359,-0.327787425,0.743293659,neg,ns,0.48708216,Gm3809,Gm3809_Intergenic_upstream,1,186922890,186922939,186922938,186922939,50,-,GCAGTTAAAGTTATTTCACAGTCCATTAAGGAGCTTACGGTGACCTCGCG,Distal Intergenic,1,186960508,186961513,1006,1,Gm3809-201,-37618,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,8,100042375,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16732,cg10405999,-0.000000031,0.000000347,-0.089204289,0.92897716,loss,ns,0.000000306,0.000000589,0.519222838,0.603975843,pos,ns,0.0000253,0.000172688,0.146503374,0.883619251,pos,ns,0.053734831,-0.000000339,0.00000594,-0.05703426,0.954554648,neg,ns,0.99041828,Gm48101,Gm48101_Intergenic_upstream,12,86331191,86331240,86331239,86331240,50,-,CTGACAGCCGATTCGCGGAGATTAATAGAAACGACACAATATTTACGTCG,Distal Intergenic,12,86347977,86348097,121,1,Gm48101-201,-16786,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,4,,NA,mapped to different genes,12,86331199,86331261,63,*,63,8,0.412698413,3,0.126984127,0.00000033,CpGisland,TRUE,U11,Tr-P
20414,cg25860089,0.0000502,0.0000071,7.081033317,9.63E-12,gain,yes,0.00000626,0.0000121,0.519218869,0.603978607,pos,ns,0.003522274,0.003531364,0.997426102,0.319335639,pos,ns,0.49575261,0.0000276,0.000121443,0.227592955,0.820112727,pos,ns,0.110883594,Hoxc4,Hoxc4_fiveUTR,15,103034718,103034767,103034766,103034767,50,+,AATTAATGATCATGAGCTCGTATTTGATGGACTCTAACTACATCGATCCG,5' UTR,15,103018934,103036405,17472,1,Hoxc4-202,15784,Hoxc4-202;Hoxc4-201,Hoxc4;Hoxc4,0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,91,15423,ENSMUSG00000075394,conserved gene but different region,15,103034736,103035107,372,*,372,27,0.626344086,0.794494542,0.072580645,4.60E-17,CpGisland,TRUE,U3,Pr-B
12282,cg01879724,-0.000000253,0.00000467,-0.054167523,0.956836587,loss,ns,0.00000412,0.00000794,0.519163343,0.604017278,pos,ns,0.003277474,0.002324878,1.409740411,0.159618794,pos,ns,0.796915974,-0.000135508,0.00008,-1.69485601,0.09110694,neg,ns,0.911722793,Fign,Fign_Intergenic_downstream,2,63820272,63820321,63820320,63820321,50,-,CATATTTACATTAAAATCTCTGCAGCTAATATGGGATTCAGAATTGGACG,Distal Intergenic,2,63980447,64097988,117542,2,Fign-202,277716,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,28,84,60344,ENSMUSG00000075324,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1457,cg02062751,-0.00000248,0.00000201,-1.234883349,0.217809074,loss,ns,-0.00000177,0.00000341,-0.519118672,0.604048391,neg,ns,-0.000193372,0.001000016,-0.19336846,0.846797048,neg,ns,0.072220665,-0.0000165,0.0000344,-0.480982216,0.630868433,neg,ns,0.968785278,Gm48201,Gm48201_Intergenic_upstream,12,13043984,13044033,13043984,13043985,50,-,CGCTCATTAAGGTTTATAAGACCTTTTGGTCTTCACAATAAAGCTTGTTT,Distal Intergenic,12,12949289,12949535,247,2,Gm48201-201,-94498,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2705,cg21461483,0.000000393,0.00000339,0.11606311,0.907677674,gain,ns,-0.00000299,0.00000575,-0.518888844,0.60420847,neg,ns,0.000336776,0.001685589,0.199797484,0.841769965,pos,ns,0.074806574,-0.000274433,0.000058,-4.734270753,0.00000335,neg,ns,0.872745118,Dnm2,Dnm2_Exon,9,21478929,21478978,21478929,21478930,50,+,CGAGGCCATTGTGAAAAAGCAGGTCGTCAAGCTGAAAGAGCCCTGTCTGA,"Exon (Dnm2-204/Dnm2, exon 10 of 21)",9,21424908,21507754,82847,1,Dnm2-204,54021,Dnm2-204;Dnm2-211;Dnm2-201;Dnm2-202;Dnm2-203;Dnm2-206;Dnm2-205;Dnm2-212;Dnm2-208;Dnm2-207,Dnm2;Dnm2;Dnm2;Dnm2;Dnm2;Dnm2;Dnm2;Dnm2;Dnm2;Dnm2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,13430,ENSMUSG00000033335,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12295,cg02517134,0.0000354,0.00000484,7.309856646,2.29E-12,gain,yes,-0.00000427,0.00000822,-0.51882075,0.604255903,neg,ns,0.00322125,0.002409075,1.337131509,0.182160041,pos,ns,0.739546885,-0.0000775,0.0000828,-0.935838714,0.350084676,neg,ns,0.085701891,Epha3,Epha3_fiveUTR,16,63864150,63864199,63864150,63864151,50,+,CGCAGGCTGATGTCAAGTTTGACACTGGAGATAAGGAGGAGTCTGGCTGC,Promoter (<=1kb),16,63543534,63864158,320625,2,Epha3-201,0,Epha3-201;Epha3-203;Epha3-206;Epha3-205;Epha3-202;Epha3-204,Epha3;Epha3;Epha3;Epha3;Epha3;Epha3,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,8,13837,ENSMUSG00000052504,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1274,cg09051526,0.00000935,0.00000585,1.598705952,0.110904651,gain,ns,0.00000515,0.00000993,0.518768284,0.604292451,pos,ns,0.009776705,0.002909297,3.360503906,0.00087531,pos,ns,3.057838042,-0.000190328,0.00010005,-1.902320823,0.058055803,neg,ns,0.591308776,Bcor,Bcor_Intron,X,12152711,12152760,12152759,12152760,50,-,TTATTTATGGGCTGTCTGCGCAATATTTATCATCGTGCAGGCTCCAGGCG,"Intron (Bcor-201/Bcor, intron 1 of 13)",20,12036743,12160355,123613,2,Bcor-201,7595,Bcor-201;Bcor-208,Bcor;Bcor,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,56,74,71458,ENSMUSG00000040363,conserved gene and region,X,12152729,12152829,101,*,101,10,0.653465347,0.935185185,0.099009901,6.91E-08,CpGisland,TRUE,NA,NRS
21572,cg18462586,0.000000358,0.00000401,0.08914045,0.929027852,gain,ns,-0.00000354,0.00000682,-0.518760473,0.604297892,neg,ns,-0.006536898,0.00199825,-3.271312131,0.00119116,neg,ns,2.924030046,0.0000116,0.0000687,0.16877922,0.866080374,pos,ns,0.841163567,Celsr2,Celsr2_Exon,3,108394961,108395010,108394961,108394962,50,-,CGGACCTCCTTGCTAAGCACCACATAGGAGAGGAAGATGAAGGGGCCCTG,"Exon (Celsr2-201/Celsr2, exon 28 of 34)",3,108390851,108415552,24702,2,Celsr2-201,20542,Celsr2-201;Celsr2-206;Celsr2-205;Celsr2-203;Celsr2-204;Celsr2-202,Celsr2;Celsr2;Celsr2;Celsr2;Celsr2;Celsr2,0;0;0;0;-659;1483,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,4,53883,ENSMUSG00000068740,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10096,cg27539480,0.000116167,0.0000209,5.565398736,5.66E-08,gain,yes,-0.0000184,0.0000355,-0.518725341,0.604322365,neg,ns,0.02113921,0.010388785,2.034810561,0.042720552,pos,ns,1.369363143,-0.000468773,0.000357269,-1.312100002,0.190457134,neg,ns,0.53701314,Gm28308,Gm28308_threeUTR,6,52169458,52169507,52169506,52169507,50,+,AAAGACGTACACTTAGTCATCCTTGCACAGAGAGCCCCTGTTTCAAAGCG,3' UTR,6,52163359,52213339,49981,2,Gm28308-201,43832,Gm28308-201;Hoxa2-201;Hoxa3-201;Hoxa3-202,Gm28308;Hoxa2;Hoxa3;Hoxa3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,103,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
18041,cg04551607,0.00000419,0.00000603,0.695423304,0.487311025,gain,ns,0.00000531,0.0000102,0.518648159,0.604376134,pos,ns,0.002276628,0.003001239,0.758562798,0.448690466,pos,ns,0.348053159,-0.0000441,0.000103212,-0.426978581,0.669691318,neg,ns,0.897285864,Pola1,Pola1_Intron,X,93408247,93408296,93408295,93408296,50,+,CTTTTGCTATTAAAGCTGGATACTGTTTTCACCCCTTCTCTCATCTCCCG,"Intron (Pola1-201/Pola1, intron 35 of 36)",20,93304767,93632155,327389,2,Pola1-201,223859,Pola1-201,Pola1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,59,62,18968,ENSMUSG00000006678,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5503,cg17126395,-0.00000134,0.00000444,-0.300692015,0.763850921,loss,ns,0.00000391,0.00000755,0.518619596,0.604396032,pos,ns,0.004774061,0.002211423,2.158818778,0.031631331,pos,ns,1.499882527,-0.000148737,0.0000761,-1.955758259,0.051391607,neg,ns,0.897218868,Mtdh,Mtdh_threeUTR,15,34123679,34123728,34123727,34123728,50,+,GAGCCAGTTTCTCAGTCTACCACTTCTGATTATCAGTGGGATGTTAGCCG,3' UTR,15,34082719,34145624,62906,1,Mtdh-201,40960,Mtdh-201;Mtdh-203;Mtdh-204;Mtdh-202;Mtdh-206;Mtdh-207;Mtdh-205,Mtdh;Mtdh;Mtdh;Mtdh;Mtdh;Mtdh;Mtdh,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,3,67154,ENSMUSG00000022255,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2785,cg11015246,-0.00002,0.00000794,-2.51313597,0.012473332,loss,ns,0.000007,0.0000135,0.518587839,0.604418156,pos,ns,0.004646486,0.003951785,1.175794336,0.240579265,pos,ns,0.618741807,-0.000262756,0.000135902,-1.933426727,0.05409394,neg,ns,0.855219068,Klhl14,Klhl14_Intergenic_upstream,18,21698263,21698312,21698311,21698312,50,-,GAGCAAAGACAATTGTTGCTCCAACTCCAGGTTTCACTCATAAAACAACG,Distal Intergenic,18,21550379,21654718,104340,2,Klhl14-202,-43594,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,38,225266,ENSMUSG00000042514,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19245,cg21330727,-0.0000582,0.00000677,-8.593243048,4.22E-16,loss,yes,0.00000597,0.0000115,0.518564522,0.6044344,pos,ns,-0.003623876,0.003371946,-1.074713776,0.283338665,neg,ns,0.547694156,-0.00000997,0.000115961,-0.085963634,0.93155082,neg,ns,0.825130759,Rapgefl1,Rapgefl1_Intron,11,98838635,98838684,98838683,98838684,50,+,TAATTAGAAAAATATCAGACACACACAGCTCTCCTAACCATAACTTCCCG,"Intron (Rapgefl1-202/Rapgefl1, intron 1 of 14)",11,98836785,98853697,16913,1,Rapgefl1-202,1850,Casc3-201;Casc3-204;Rapgefl1-202,Casc3;Casc3;Rapgefl1,33730;28827;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,268480,ENSMUSG00000038020,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
12674,cg18722069,-0.0000154,0.000008,-1.927731296,0.054801906,loss,ns,0.00000705,0.0000136,0.518503099,0.604477193,pos,ns,-0.007107847,0.003981049,-1.785420754,0.075170617,neg,ns,1.123951884,0.000219414,0.000136908,1.602641791,0.110032158,pos,ns,0.811315694,Gm17952,Gm17952_Intergenic_downstream,3,66537342,66537391,66537390,66537391,50,-,ATGAGATATTCTCATTGTAATTGTGTTTCATGAGGGCACAAGATCCCACG,Distal Intergenic,3,66562805,66563551,747,2,Gm17952-201,26209,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,5,100416166,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26665,cg23731940,-0.0000338,0.00000754,-4.490497694,0.00001,loss,ns,0.00000664,0.0000128,0.518491845,0.604485034,pos,ns,-0.006014412,0.00375087,-1.603471135,0.109849007,neg,ns,0.959203863,0.000000247,0.000128992,0.001916384,0.99847218,pos,ns,0.895166894,Gm6439,Gm6439_Intergenic_downstream,3,150296541,150296590,150296589,150296590,50,+,ACATTGGACAGAGTTTAATTATTAATGTGTTTCCCTCAGAGAATGACTCG,Distal Intergenic,3,150515220,150516081,862,2,Gm6439-201,219491,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,3,623554,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5163,cg15585036,0.000038,0.00000957,3.973127322,0.0000883,gain,ns,-0.00000843,0.0000163,-0.518487583,0.604488003,neg,ns,0.002133388,0.004760726,0.448122511,0.654377806,pos,ns,0.184171439,-0.000212565,0.000163721,-1.298336927,0.195136634,neg,ns,0.077718122,Plxna4,Plxna4_fiveUTR,6,32588190,32588239,32588190,32588191,50,+,CGCTGCTGCTGTGCATTGAAGCCCGGCCAAGCGCTGCAAAAACTCCAGCT,Promoter (<=1kb),6,32144268,32588192,443925,2,Plxna4-201,0,Plxna4-201,Plxna4,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,9,243743,ENSMUSG00000029765,conserved gene and region,6,32587622,32588561,940,*,940,111,0.760638298,0.822377755,0.118085106,6.12E-93,CpGisland,TRUE,U3,Pr-B
11981,cg20865948,-0.000000695,0.0000013,-0.532709292,0.594616472,loss,ns,-0.00000115,0.00000222,-0.518320139,0.604604668,neg,ns,0.00069893,0.000648956,1.077006335,0.282314838,pos,ns,0.549266295,-0.0000355,0.0000223,-1.589013669,0.113076631,neg,ns,0.970037287,Akap10,Akap10_Exon,11,61903962,61904011,61904010,61904011,50,+,GTTCCACTGGTCAGCACTTCAATCTGGTATTTACAGAAATGGTGACTTCG,"Exon (Akap10-202/Akap10, exon 7 of 15)",11,61871307,61930252,58946,2,Akap10-202,26241,Akap10-202;Akap10-201;Akap10-203,Akap10;Akap10;Akap10,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,56697,ENSMUSG00000047804,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
471,cg02498174,-0.00000317,0.0000068,-0.465900424,0.641613952,loss,ns,0.00000599,0.0000116,0.518134266,0.604734185,pos,ns,-0.003009914,0.003385598,-0.889034589,0.374673829,neg,ns,0.426346641,0.00015771,0.00011643,1.354543589,0.176549428,pos,ns,0.818123611,Dab2,Dab2_Intergenic_upstream,15,6280289,6280338,6280289,6280290,50,-,CGTTTAGCATTTCACAAGGCCCCTACTGTTAAATTCTGGGAATGGGGCCA,Distal Intergenic,15,6299788,6440712,140925,1,Dab2-201,-19499,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,3,13132,ENSMUSG00000022150,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14721,cg12955689,0.00000883,0.00000771,1.144664021,0.253231366,gain,ns,-0.00000678,0.0000131,-0.517768049,0.604989403,neg,ns,-0.002547688,0.003837256,-0.663934856,0.507225491,neg,ns,0.294798929,0.0000835,0.000131963,0.633012917,0.527191886,pos,ns,0.850070706,Rnf165,Rnf165_threeUTR,18,77458680,77458729,77458728,77458729,50,+,TTTTTGTTTTTCTATCAGCTGAAATCGCTCTAGCATTTGCTCTACGCGCG,3' UTR,18,77456110,77565136,109027,2,Rnf165-201,106407,Rnf165-201;Rnf165-202;Rnf165-207,Rnf165;Rnf165;Rnf165,0;0;8419,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,10,21,225743,ENSMUSG00000025427,conserved gene and region,18,77458705,77458805,101,*,101,9,0.603960396,0.977419355,0.089108911,0.000001,CpGisland,TRUE,U15,NS
24182,cg19591642,0.0000129,0.0000135,0.956278644,0.339676615,gain,ns,-0.0000119,0.000023,-0.517694675,0.605040543,neg,ns,0.020159283,0.006729972,2.995448153,0.00296142,pos,ns,2.528500066,-0.00096074,0.000231443,-4.151084614,0.0000428,neg,ns,0.438158981,Tnrc6a,Tnrc6a_Exon,7,123186628,123186677,123186676,123186677,50,+,AGTACTTCACCAGCCAGTCCTCCAGGTTCAATAGGAGATGGCTGGCCACG,"Exon (Tnrc6a-201/Tnrc6a, exon 18 of 24)",7,123124177,123193987,69811,1,Tnrc6a-203,62451,Tnrc6a-203;Tnrc6a-201;Tnrc6a-205;Tnrc6a-208,Tnrc6a;Tnrc6a;Tnrc6a;Tnrc6a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,17,24,233833,ENSMUSG00000052707,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14756,cg05785936,-0.0000682,0.0000106,-6.447249432,4.36E-10,loss,yes,0.0000093,0.000018,0.517668486,0.605058797,pos,ns,-0.007342454,0.005265469,-1.394454092,0.16417903,neg,ns,0.784682314,-0.000108669,0.000181079,-0.60011986,0.548864785,neg,ns,0.869921973,Gm28385,Gm28385_Intergenic_upstream,1,77556365,77556414,77556365,77556366,50,+,CGTGAACAAACATGTTAGCAGAATCAATAACTGGAACTGATCAGCTATTT,Distal Intergenic,1,77570672,77570963,292,1,Gm28385-201,-14258,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27380,cg17011097,-0.000000733,0.00000145,-0.504190671,0.614485545,loss,ns,-0.00000128,0.00000247,-0.517551418,0.605140397,neg,ns,-0.000300302,0.000723848,-0.414868302,0.678525276,neg,ns,0.16843397,-0.000000938,0.0000249,-0.037692786,0.969956889,neg,ns,0.958449975,Pou2f1,Pou2f1_Exon,1,165896456,165896505,165896504,165896505,50,+,AAGGCCACACGGATGTTGGTCTCTATGCTGGTGCGTTTCTTCCTCCTACG,"Exon (Pou2f1-205/Pou2f1, exon 11 of 17)",1,165865154,165934948,69795,2,Pou2f1-205,38443,Pou2f1-205;Pou2f1-208;Pou2f1-207;Pou2f1-206;Pou2f1-216;Pou2f1-209;Pou2f1-204;Pou2f1-210;Pou2f1-201;Pou2f1-202;Pou2f1-213;Pou2f1-203;Pou2f1-215,Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1,0;0;0;0;0;0;0;-4337;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,18,18986,ENSMUSG00000026565,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14482,cg02658132,-0.00000214,0.00000106,-2.019422834,0.044303542,loss,ns,-0.000000933,0.0000018,-0.517465754,0.605200109,neg,ns,0.00065894,0.000528325,1.247224282,0.213256701,pos,ns,0.671097314,-0.0000428,0.0000182,-2.353538155,0.019219845,neg,ns,0.969583933,Ptprd,Ptprd_threeUTR,4,75941277,75941326,75941325,75941326,50,+,AAATGGAACTTGTGTCAGCAAAGAACTGATTTTCATACAGACTTCTTTCG,3' UTR,4,75941238,76449980,508743,2,Ptprd-206,508654,Ptprd-206;Ptprd-204;Ptprd-213;Ptprd-220;Ptprd-203;Ptprd-217;Ptprd-218;Ptprd-219;Ptprd-201,Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,8,32,19266,ENSMUSG00000028399,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25803,cg00767915,0.0000289,0.00000369,7.820092486,8.34E-14,gain,yes,0.00000325,0.00000628,0.517384856,0.605256503,pos,ns,0.00461716,0.001838879,2.510856616,0.012552502,pos,ns,1.901269694,0.0000276,0.0000632,0.43587251,0.663232591,pos,ns,0.080204881,Uncx,Uncx_Intergenic_downstream,5,139550094,139550143,139550094,139550095,50,-,CGGTTATTTTATCTAAGGTGAACAATTTGTCTGGCAGCGATAAATCGCCT,Downstream (1-2kb),5,139543898,139545268,1371,1,Uncx-202,6245,Uncx-201;Uncx-202,Uncx;Uncx,0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,59,88,22255,ENSMUSG00000029546,conserved gene and region,5,139550084,139550187,104,*,104,11,0.509615385,1.62962963,0.105769231,5.75E-09,CpGisland,TRUE,U13,Hc-P
768,cg05226148,-0.0000032,0.00000122,-2.616962268,0.009306496,loss,ns,0.00000107,0.00000208,0.517343822,0.605285109,pos,ns,0.000654938,0.000608331,1.076614362,0.282489709,pos,ns,0.548997368,0.00000778,0.0000209,0.37172432,0.710352066,pos,ns,0.039492683,Chd7,Chd7_fiveUTR,4,8691047,8691096,8691095,8691096,50,+,CCGAGGGTCACTTCCTCGCATGTAAATGGCTTTTTGTTGTGCTGCCGGCG,Promoter (<=1kb),4,8690406,8755906,65501,1,Chd7-207,641,Chd7-207;Chd7-203;Chd7-201;Chd7-202,Chd7;Chd7;Chd7;Chd7,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,16,320790,ENSMUSG00000041235,conserved gene but different region,4,8690004,8692273,2270,*,2270,364,0.773568282,1.08741227,0.160352423,0,CpGisland,TRUE,U1,Pr-A
24438,cg20311825,0.0000052,0.00000238,2.179429054,0.03005224,gain,ns,-0.0000021,0.00000405,-0.517328475,0.605295807,neg,ns,0.000194299,0.001186848,0.163710374,0.87006583,pos,ns,0.060447887,0.0000179,0.0000408,0.439039626,0.660938676,pos,ns,0.907377293,Xpo6,Xpo6_threeUTR,7,126107070,126107119,126107118,126107119,50,+,CCTGCATGATGGCACTGAACTGGGGCTCATTCTCCATCTGCTCCTCAGCG,3' UTR,7,126101715,126200501,98787,2,Xpo6-213,93382,Xpo6-213;Xpo6-201;Xpo6-209;Xpo6-212;Xpo6-218;Xpo6-219;Xpo6-216;Xpo6-214;Xpo6-204;Xpo6-205,Xpo6;Xpo6;Xpo6;Xpo6;Xpo6;Xpo6;Xpo6;Xpo6;Xpo6;Xpo6,0;0;-2262;0;0;0;-2049;0;0;5706,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,1,74204,ENSMUSG00000000131,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6342,cg02019113,0.00000667,0.00000441,1.512129461,0.131519665,gain,ns,-0.00000387,0.00000749,-0.517215994,0.605374223,neg,ns,-0.000431217,0.00219399,-0.196544649,0.844312676,neg,ns,0.07349669,0.00000768,0.0000755,0.101732427,0.919034832,pos,ns,0.931568125,Tshz3,Tshz3_Intergenic_downstream,7,36941052,36941101,36941052,36941053,50,+,CGTCAGTATCATTTAGCTCAAGACAGTTTTAAAGGAAAAATGAACATTTG,Distal Intergenic,7,36698217,36702113,3897,1,Tshz3-202,242835,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,21,58,243931,ENSMUSG00000021217,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15042,cg10020041,-0.0000645,0.0000125,-5.163879773,0.000000433,loss,yes,0.000011,0.0000212,0.517148823,0.605421053,pos,ns,-0.011627018,0.006217654,-1.870000791,0.062426062,neg,ns,1.204634062,0.000123934,0.000213825,0.57960567,0.562601543,pos,ns,0.809115856,Slc14a2,Slc14a2_Promoter,18,78601220,78601269,78601268,78601269,50,+,GAATTTCATTTTCAACATGAATGGTCACACTTCAAGCAATGAATGAGACG,Promoter (4-5kb),18,78146148,78596942,450795,2,Slc14a2-206,-4278,Slc14a2-206;Slc14a2-203,Slc14a2;Slc14a2,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,12,27411,ENSMUSG00000024552,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11864,cg19831512,-0.0000161,0.00000261,-6.186774081,1.94E-09,loss,yes,0.00000229,0.00000443,0.517147781,0.60542178,pos,ns,-0.002721152,0.001296655,-2.098593412,0.036661579,neg,ns,1.43578884,0.000023,0.0000446,0.515360405,0.606668504,pos,ns,0.939384736,Pald1,Pald1_Exon,10,61355813,61355862,61355813,61355814,50,-,CGTGATCACAACAGGGGCCACCTTGTTGGGGATGATGGACTTGGCCTTGC,"Exon (Pald1-201/Pald1, exon 2 of 20)",10,61319656,61383530,63875,2,Pald1-201,27668,Pald1-201;Pald1-202,Pald1;Pald1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,27355,ENSMUSG00000020092,conserved gene and region,10,61355752,61355814,63,*,63,8,0.619047619,1.347593583,0.126984127,0.00000033,CpGisland,TRUE,U11,Tr-P
9253,cg11128550,-0.00000214,0.00000186,-1.151832217,0.250277556,loss,ns,-0.00000164,0.00000316,-0.517112416,0.605446437,neg,ns,0.001462535,0.000926716,1.578191256,0.115541519,pos,ns,0.937261928,-0.0000394,0.0000319,-1.237187858,0.21695369,neg,ns,0.958086147,Cadm1,Cadm1_Exon,9,47850309,47850358,47850309,47850310,50,-,CGCAGCAGACGCAGACACAGCTATAATCAATGCAGAAGGAGGACAGAACA,"Exon (Cadm1-204/Cadm1, exon 10 of 10)",9,47530173,47853385,323213,1,Cadm1-204,320136,Cadm1-204;Cadm1-209;Cadm1-206;Cadm1-202;Cadm1-203;Cadm1-201,Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,13,77,54725,ENSMUSG00000032076,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12583,cg01716627,0.0000242,0.00000802,3.016392525,0.002769781,gain,ns,0.00000704,0.0000136,0.517069827,0.60547613,pos,ns,0.009047044,0.003990214,2.267308136,0.024059718,pos,ns,1.618709474,-0.000209039,0.000137223,-1.523348743,0.128690919,neg,ns,0.727845842,Scn3a,Scn3a_Exon,2,65508427,65508476,65508475,65508476,50,+,GGCACCATCCTGGATGACATACTGGCCTGACTAACGTTACTGTTGCGTCG,"Exon (Scn3a-201/Scn3a, exon 12 of 27)",2,65457118,65567492,110375,2,Scn3a-201,59016,Scn3a-201;Scn3a-202;Scn3a-206;Scn3a-208;Scn3a-207,Scn3a;Scn3a;Scn3a;Scn3a;Scn3a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,20269,ENSMUSG00000057182,conserved gene and region,2,65508461,65508647,187,*,187,12,0.534759358,0.910714286,0.064171123,0.000000285,CpGisland,TRUE,U15,NS
23042,cg10956761,-0.00000115,0.00000151,-0.765627867,0.444480286,loss,ns,0.00000132,0.00000256,0.517037392,0.605498745,pos,ns,0.0000823,0.00074969,0.109734797,0.912690705,pos,ns,0.039676373,0.0000213,0.0000258,0.8254408,0.409756135,pos,ns,0.963969059,Spred1,Spred1_Exon,2,117153082,117153131,117153082,117153083,50,-,CGTCACTGTCTTCAAAGTCCCTCATCAGGAAGAGAATGGCTGTGCTGACT,"Exon (Spred1-201/Spred1, exon 2 of 7)",2,117121374,117182279,60906,1,Spred1-201,31708,Spred1-201;Spred1-202,Spred1;Spred1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,6,114715,ENSMUSG00000027351,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18076,cg15182757,-0.00000313,0.00000288,-1.085300438,0.278631872,loss,ns,0.00000253,0.0000049,0.516954965,0.605556217,pos,ns,0.002479556,0.001434567,1.728435361,0.08490592,pos,ns,1.071062027,-0.0000543,0.0000493,-1.099723939,0.272305696,neg,ns,0.929797088,Pola1,Pola1_Intron,X,93503331,93503380,93503331,93503332,50,-,CGTCAGGCTGGCTATGCTCAGATAATGAAGTTGGGCAATTCTGAAGCACT,"Intron (Pola1-201/Pola1, intron 26 of 36)",20,93304767,93632155,327389,2,Pola1-201,128775,Pola1-201,Pola1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,59,62,18968,ENSMUSG00000006678,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27406,cg00479641,-0.000000682,0.00000139,-0.489312396,0.624966581,loss,ns,0.00000122,0.00000237,0.516609613,0.605797039,pos,ns,0.000590764,0.000693473,0.851891715,0.394931815,pos,ns,0.403477879,0.0000165,0.0000238,0.69014709,0.490618043,pos,ns,0.96115882,Arfgef2,Arfgef2_Exon,2,166894648,166894697,166894696,166894697,50,-,TGTGAAATTATGCAGTTTGACCTGATCCCTGAGCTCCGAGCAGTTCTGCG,"Exon (Arfgef2-201/Arfgef2, exon 39 of 39)",2,166805588,166898052,92465,1,Arfgef2-201,89060,Arfgef2-201,Arfgef2,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,99371,ENSMUSG00000074582,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25670,cg24095277,-0.000000132,0.0000015,-0.088187143,0.929784876,loss,ns,0.00000132,0.00000255,0.516549809,0.605838747,pos,ns,0.001978862,0.000746415,2.651154846,0.008433877,pos,ns,2.073972734,-0.0000518,0.0000257,-2.018195888,0.044431877,neg,ns,0.962162202,Eif4g3,Eif4g3_threeUTR,4,138206215,138206264,138206215,138206216,50,+,CGTCTTCGCCAATCACAGTGCAGCAAGGCCAATTCTCGCAGAAACCCCCA,3' UTR,4,137993022,138208508,215487,1,Eif4g3-203,213193,Eif4g3-203;Eif4g3-202;Eif4g3-205;Eif4g3-215;Eif4g3-212;Eif4g3-208;Eif4g3-213,Eif4g3;Eif4g3;Eif4g3;Eif4g3;Eif4g3;Eif4g3;Eif4g3,0;0;0;0;0;0;4626,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,10,230861,ENSMUSG00000028760,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6021,cg03977237,-0.0000229,0.00000413,-5.531669062,6.75E-08,loss,yes,0.00000363,0.00000702,0.516530706,0.605852069,pos,ns,-0.000361908,0.002057274,-0.175916039,0.860474762,neg,ns,0.065261863,-0.0000126,0.0000707,-0.177693396,0.859079825,neg,ns,0.947995232,Cxxc5,Cxxc5_Exon,18,35859346,35859395,35859346,35859347,50,+,CGCATCAACTGCGAGCAGTGCAGCAGTTGTAGGAATCGAAAGACTGGCCA,"Exon (Cxxc5-201/Cxxc5, exon 2 of 3)",18,35829788,35861688,31901,1,Cxxc5-201,29558,Cxxc5-202;Cxxc5-201;Cxxc5-206;Cxxc5-203;Cxxc5-204;Cxxc5-205,Cxxc5;Cxxc5;Cxxc5;Cxxc5;Cxxc5;Cxxc5,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,49,67393,ENSMUSG00000046668,conserved gene and region,18,35859255,35859383,129,*,129,10,0.627906977,0.792383292,0.07751938,0.000000711,CpGisland,TRUE,U10,Tr-S
13793,cg02060466,0.00000254,0.00000215,1.180506769,0.238703713,gain,ns,-0.00000189,0.00000366,-0.516518144,0.60586083,neg,ns,-0.001071677,0.001070956,-1.000673237,0.317765256,neg,ns,0.49789359,0.000063,0.0000368,1.710824259,0.088113941,pos,ns,0.94519547,Sin3b,Sin3b_Exon,8,72750435,72750484,72750483,72750484,50,+,GGTGAAGTGGAGCTGGAGGAGTACTACCCGGCCTTCCTGGACATGGTGCG,"Exon (Sin3b-201/Sin3b, exon 14 of 19)",8,72723288,72758201,34914,1,Sin3b-201,27147,Sin3b-201;Sin3b-206;Sin3b-205,Sin3b;Sin3b;Sin3b,0;8673;-2841,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,20467,ENSMUSG00000031622,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5581,cg02799145,-0.00000165,0.00000106,-1.558980804,0.120021199,loss,ns,0.000000927,0.00000179,0.516469763,0.605894573,pos,ns,0.0002467,0.000525706,0.469273095,0.63920432,pos,ns,0.194360299,-0.0000118,0.0000181,-0.652409823,0.514620299,neg,ns,0.98147867,4931406P16Rik,4931406P16Rik_fiveUTR,7,34285150,34285199,34285198,34285199,50,+,CGCCGCTTGTAGTCCATTTTACTGTCCTGGGCACTGCAGCAATACATGCG,5' UTR,7,34236707,34313551,76845,2,4931406P16Rik-202,28352,4931406P16Rik-202;4931406P16Rik-201;4931406P16Rik-210;4931406P16Rik-208;4931406P16Rik-203;4931406P16Rik-204,4931406P16Rik;4931406P16Rik;4931406P16Rik;4931406P16Rik;4931406P16Rik;4931406P16Rik,0;0;0;0;28346;20313,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,8,233103,ENSMUSG00000066571,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21621,cg08060633,0.0000648,0.0000105,6.152834038,2.35E-09,gain,yes,-0.00000925,0.0000179,-0.516461848,0.605900094,neg,ns,0.005004531,0.005245422,0.954075943,0.340788554,pos,ns,0.467515,-0.000047,0.00018039,-0.260378559,0.794744645,neg,ns,0.85670803,Cep112,Cep112_Exon,11,108605455,108605504,108605503,108605504,50,+,AGGTAGGGTGCCATTGTGCACAGTCTGGGAGGATTAGTATCAAAGCTGCG,"Exon (Cep112-218/Cep112, exon 1 of 3)",11,108425192,108860615,435424,1,Cep112-213,180263,Cep112-213;Cep112-201;Cep112-206;Cep112-216;Cep112-208;Cep112-211;Cep112-218,Cep112;Cep112;Cep112;Cep112;Cep112;Cep112;Cep112,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,9,76380,ENSMUSG00000020728,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12989,cg09090312,0.0000109,0.000007,1.552814151,0.121487825,gain,ns,0.00000614,0.0000119,0.516454408,0.605905282,pos,ns,-0.002518037,0.003481943,-0.723170055,0.47012069,neg,ns,0.327790636,0.000105843,0.000119744,0.883908429,0.377430639,pos,ns,0.870341574,Gm5342,Gm5342_Intergenic_upstream,7,69062256,69062305,69062256,69062257,50,+,CGCAGAGGACTGGTGGCTCGTCTGACACATCTGGGCACAGAAAGTAATTG,Distal Intergenic,7,69209884,69210886,1003,1,Gm5342-201,-147579,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,7,384741,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24277,cg20022839,-0.00001,0.00000197,-5.096595796,0.000000603,loss,yes,-0.00000173,0.00000334,-0.516414283,0.605933267,neg,ns,-0.001715291,0.000979888,-1.750497799,0.081021684,neg,ns,1.091398737,0.00000381,0.0000337,0.113009588,0.9100961,pos,ns,0.950116107,Pou3f1,Pou3f1_Intron,4,124465477,124465526,124465525,124465526,50,+,AAGAATAATTACGGCTGAACAATTTTTGATGCCTGTAACCTTCGAAAGCG,"Intron (1700057H15Rik-202/1700057H15Rik-202, intron 2 of 3)",4,124656807,124660655,3849,1,Pou3f1-201,-191281,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,43,85,18991,ENSMUSG00000090125,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25080,cg12835645,-0.0000598,0.000017,-3.512558626,0.000509812,loss,ns,-0.0000149,0.0000289,-0.516305538,0.606009115,neg,ns,-0.018988766,0.008478888,-2.239534912,0.025829922,neg,ns,1.587876908,0.0000518,0.000291588,0.177626799,0.859132085,pos,ns,0.785992188,Nfasc,Nfasc_Exon,1,132583089,132583138,132583137,132583138,50,-,TGTCAGCTGTATAGGCTGAGCCTGGGCCTTAACTGGGACAGTTTTTTTCG,"Exon (Nfasc-202/Nfasc, exon 27 of 30)",1,132564690,132741757,177068,2,Nfasc-202,158619,Nfasc-202;Nfasc-201;Nfasc-207;Nfasc-203;Nfasc-205;Nfasc-204,Nfasc;Nfasc;Nfasc;Nfasc;Nfasc;Nfasc,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,10,269116,ENSMUSG00000026442,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8636,cg05347424,0.0000581,0.0000129,4.491888008,0.00000998,gain,ns,-0.0000113,0.000022,-0.516139071,0.60612523,neg,ns,0.022100048,0.006435493,3.434087595,0.000675462,pos,ns,3.170399186,-0.000323403,0.000221316,-1.461271549,0.144953789,neg,ns,0.41832388,Btrc,Btrc_Intron,19,45476099,45476148,45476099,45476100,50,+,CGTTTTGGCTCTGTACTTAATGCACAAACAGTGCGATCTGCGGGGCTGTA,"Intron (Btrc-204/Btrc, intron 1 of 2)",19,45363734,45507736,144003,1,Btrc-204,112365,Btrc-204;Btrc-201;Btrc-210;Btrc-202;Btrc-203;Btrc-209,Btrc;Btrc;Btrc;Btrc;Btrc;Btrc,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,63,98,12234,ENSMUSG00000025217,conserved gene and region,19,45476012,45476140,129,*,129,10,0.527131783,1.151785714,0.07751938,0.000000711,CpGisland,TRUE,NA,NRS
8370,cg25047559,-0.0000373,0.0000151,-2.469350639,0.01407445,loss,ns,0.0000132,0.0000257,0.516033267,0.606199036,pos,ns,0.01629975,0.007515093,2.168935177,0.030847528,pos,ns,1.510779632,-0.000558825,0.000258443,-2.162273304,0.031361772,neg,ns,0.693782755,Zeb2,Zeb2_Intron,2,45058389,45058438,45058389,45058390,50,-,CGGCGGCTTTCTGAGGTGAGAGAAACTGACAGCACTAACTCTCCAGGGCA,"Intron (Zeb2-212/Zeb2, intron 3 of 10)",2,44983632,45117395,133764,2,Zeb2-212,58957,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-218;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13368,cg26616428,-0.00000209,0.00000674,-0.309409598,0.757217834,loss,ns,-0.00000591,0.0000115,-0.516004103,0.606219381,neg,ns,0.004140899,0.003355258,1.234152187,0.218080975,pos,ns,0.66138222,-0.000251092,0.000115387,-2.176085408,0.030303697,neg,ns,0.613775883,Nr2f2,Nr2f2_Intergenic_downstream,7,70348609,70348658,70348657,70348658,50,-,ACAGAAGCGCAAATTATAGAGTTCAGCTTCAACACACGCTCTGTCACCCG,Distal Intergenic,7,70353074,70355237,2164,2,Nr2f2-203,6628,Nr2f2-201;Nr2f2-203,Nr2f2;Nr2f2,0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,19,69,11819,ENSMUSG00000030551,mapped to different genes,7,70348586,70348733,148,*,148,10,0.533783784,1.020689655,0.067567568,0.00000248,CpGisland,TRUE,NA,NRS
20223,cg25836134,0.00000517,0.00000202,2.555813563,0.011070823,gain,ns,-0.00000177,0.00000344,-0.515995593,0.606225318,neg,ns,0.00079966,0.001007442,0.793752475,0.427946696,pos,ns,0.368610322,-0.0000308,0.0000346,-0.890090165,0.374107705,neg,ns,0.038306815,Hoxc11,Hoxc11_Promoter,15,102955304,102955353,102955304,102955305,50,+,CGTGTTTTGGGTCAGTCCGATTTTATGTGGAGTTTTATAAGCATTCAAAG,Promoter (<=1kb),15,102954427,102957708,3282,1,Hoxc11-201,877,Hoxc11-201,Hoxc11,0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,12,24,109663,ENSMUSG00000001656,mapped to different genes,15,102954888,102955305,418,*,418,42,0.722488038,0.77081138,0.100478469,2.78E-32,CpGisland,TRUE,U13,Hc-P
4607,cg00773632,-0.000000519,0.00000174,-0.299257267,0.764944286,loss,ns,-0.00000152,0.00000295,-0.515903154,0.606289806,neg,ns,0.000750788,0.000863563,0.869406727,0.385297345,pos,ns,0.414203983,-0.0000401,0.0000297,-1.351190511,0.177619691,neg,ns,0.971771864,Ntm,Ntm_Intron,9,29939620,29939669,29939620,29939621,50,+,CGCCTATTAAAAAGCGGCCTTATTAATGGAATTGTACATCTAGGATTAAT,"Intron (Ntm-201/Ntm, intron 1 of 7)",9,28994750,29963129,968380,2,Ntm-201,23460,Ntm-201;Ntm-204;Ntm-210;Ntm-207;Ntm-209,Ntm;Ntm;Ntm;Ntm;Ntm,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,27,32,235106,ENSMUSG00000059974,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27216,cg03469472,-0.00000848,0.00000294,-2.884824131,0.004190758,loss,ns,0.00000258,0.00000499,0.515664456,0.606456342,pos,ns,0.002754595,0.001463009,1.882829127,0.060659766,pos,ns,1.217099272,-0.00011111,0.0000503,-2.208395031,0.027948286,neg,ns,0.061948756,Rc3h1,Rc3h1_fiveUTR,1,160906486,160906535,160906486,160906487,50,+,CGAGCAACAAGATGGCCCCTGCTGCAGGAGCAGCCTCAGCAGCAGCAGGT,Promoter (<=1kb),1,160906418,160974978,68561,1,Rc3h1-202,68,Rc3h1-202;Rc3h1-204,Rc3h1;Rc3h1,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,8,381305,ENSMUSG00000040423,conserved gene but different region,1,160906172,160906487,316,*,316,39,0.731012658,0.927732611,0.123417722,7.65E-34,CpGisland,TRUE,U1,Pr-A
15622,cg23917034,-0.000047,0.00000922,-5.102263858,0.000000586,loss,yes,-0.00000807,0.0000157,-0.515646785,0.606468672,neg,ns,-0.009882802,0.004587266,-2.154399395,0.031979089,neg,ns,1.495133913,0.0000867,0.000157756,0.549525573,0.583040468,pos,ns,0.689264064,Nfib,Nfib_Intron,4,82304735,82304784,82304783,82304784,50,+,GGCTTGAGACGTGACCACAGCTACAGAAAAAACAAACAGCCTTCTTCACG,"Intron (Nfib-201/Nfib, intron 11 of 11)",4,82290173,82505308,215136,2,Nfib-201,200524,Nfib-201;Nfib-203;Nfib-202;Nfib-205;Nfib-206;Nfib-204,Nfib;Nfib;Nfib;Nfib;Nfib;Nfib,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,66,18028,ENSMUSG00000008575,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16809,cg02925560,0.0000283,0.0000152,1.859195962,0.06394672,gain,ns,0.0000133,0.0000258,0.515483325,0.606582729,pos,ns,0.051933812,0.007571202,6.859387564,3.76E-11,pos,yes,10.42490899,-0.00209655,0.000260373,-8.052101916,1.76E-14,neg,yes,0.803959357,Lrba,Lrba_Intron,3,86560576,86560625,86560624,86560625,50,-,AAAACTGCAGTCTCTGCTGTACAGTTATAGTAGTTATGACTAATGAACCG,"Intron (Lrba-202/Lrba, intron 40 of 50)",3,86224680,86746712,522033,1,Lrba-202,335896,Lrba-202;Lrba-204;Lrba-201;Lrba-203;Lrba-205;Lrba-206,Lrba;Lrba;Lrba;Lrba;Lrba;Lrba,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,45,80877,ENSMUSG00000028080,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20928,cg01140958,0.0000019,0.0000012,1.590997876,0.112629262,gain,ns,0.00000105,0.00000203,0.515450067,0.606605936,pos,ns,-0.000926751,0.000594898,-1.557833298,0.120293053,neg,ns,0.919759454,0.0000279,0.0000205,1.365429054,0.173108205,pos,ns,0.969982347,Elp4,Elp4_Intron,2,105719868,105719917,105719868,105719869,50,+,CGGCCTTGATGGCCGCACCAGAAGGTGATTTGATAAAAGGCGGACTCTGG,"Intron (Elp4-202/Elp4, intron 9 of 9)",2,105701027,105904564,203538,2,Elp4-202,184647,Elp4-202,Elp4,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,16,77766,ENSMUSG00000027167,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5957,cg01761369,-0.0000345,0.00000858,-4.025957215,0.0000714,loss,ns,-0.00000751,0.0000146,-0.515305644,0.606706719,neg,ns,-0.010876572,0.004268488,-2.548108956,0.011313098,neg,ns,1.946418445,0.00021874,0.000146793,1.490125269,0.137208028,pos,ns,0.826910691,Dab2ip,Dab2ip_fiveUTR,2,35558422,35558471,35558422,35558423,50,+,CGAGGGCTGGAAAGGGGCCTGCTTGCAGGAATACCCAGTCATCTAGTTGG,Promoter (<=1kb),2,35558266,35730994,172729,1,Dab2ip-205,156,Dab2ip-205,Dab2ip,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,12,69601,ENSMUSG00000026883,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15486,cg22296212,-0.00000373,0.00000593,-0.629140044,0.529720713,loss,ns,0.0000052,0.0000101,0.515262272,0.606736987,pos,ns,0.010222031,0.002953827,3.460606406,0.000614547,pos,ns,3.211444567,-0.000278263,0.000101582,-2.739295149,0.006513562,neg,ns,0.872800653,Smoc1,Smoc1_Exon,12,81135832,81135881,81135880,81135881,50,+,CATCAGTGGCTCTTCTGTGCAGAATAAAACTCCTGTATGTTCAGGTACCG,"Exon (Smoc1-202/Smoc1, exon 4 of 13)",12,81026808,81186414,159607,1,Smoc1-202,109024,Smoc1-202;Smoc1-201;Smoc1-203,Smoc1;Smoc1;Smoc1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,3,64075,ENSMUSG00000021136,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13342,cg25918248,-0.0000254,0.00000668,-3.80427027,0.000171319,loss,ns,0.00000584,0.0000113,0.515217498,0.606768234,pos,ns,-0.006739348,0.003322412,-2.028450407,0.043368921,neg,ns,1.362821387,0.0000903,0.000114257,0.789957494,0.430156427,pos,ns,0.832144211,0610010K14Rik,0610010K14Rik_threeUTR,11,70236880,70236929,70236928,70236929,50,+,GTCCGTTCCTTGATGACACAGCTGATGTGATTAAGATCGTCCCCAAATCG,Promoter (<=1kb),11,70235206,70236904,1699,2,0610010K14Rik-210,0,0610010K14Rik-211;0610010K14Rik-210;0610010K14Rik-205;0610010K14Rik-209;0610010K14Rik-202;0610010K14Rik-204;0610010K14Rik-208;0610010K14Rik-207;0610010K14Rik-203;0610010K14Rik-213;0610010K14Rik-212;0610010K14Rik-206;0610010K14Rik-201;0610010K14Rik-214;Alox12-201;Gm21988-201;Gm21988-202;Rnasek-202;Rnasek-201;Rnasek-203,0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;Alox12;Gm21988;Gm21988;Rnasek;Rnasek;Rnasek,-684;0;0;0;0;0;0;0;0;0;0;0;0;0;18424;0;0;2851;2913;2129,TRUE,FALSE,TRUE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,9,104457,ENSMUSG00000020831,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21258,cg15944174,-0.00000606,0.00000169,-3.584595992,0.000392,loss,ns,-0.00000148,0.00000287,-0.515162741,0.606806449,neg,ns,-0.001032476,0.000841018,-1.227650365,0.220509621,neg,ns,0.656572458,-0.000011,0.0000289,-0.381252366,0.703277158,neg,ns,0.040993932,Gm11708,Gm11708_Promoter,11,107012889,107012938,107012937,107012938,50,-,GCATCAGCCTCCGGAGCTGGGGATTGTGGGTTCGAGTCCCATCTGGGTCG,Promoter (8-9kb),11,107003909,107004740,832,2,Gm11708-201,-8198,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,2,100417144,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
27929,cg16227001,-0.00000622,0.00000257,-2.420746681,0.016062907,loss,ns,-0.00000225,0.00000437,-0.51513365,0.606826752,neg,ns,-0.0026408,0.00127951,-2.063914379,0.039857727,neg,ns,1.399487468,0.0000554,0.000044,1.25848174,0.20916455,pos,ns,0.909624037,Rps6kc1,Rps6kc1_Intergenic_downstream,1,190654206,190654255,190654206,190654207,50,-,CGCCTTGCCGTTTTTCCACACGAGGCAGATGGGTAATTACGAAGCTAATA,Distal Intergenic,1,190808888,190810463,1576,2,Rps6kc1-207,156257,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,14,29,320119,ENSMUSG00000089872,conserved gene and region,1,190654118,190654246,129,*,129,9,0.558139535,0.895833333,0.069767442,0.00000752,CpGisland,TRUE,U15,NS
15959,cg18217426,-0.00000306,0.00000301,-1.016653222,0.310111218,loss,ns,0.00000263,0.00000511,0.515006589,0.606915433,pos,ns,0.002463421,0.001498262,1.644185481,0.101151585,pos,ns,0.995027309,-0.0000701,0.0000515,-1.35992302,0.174842478,neg,ns,0.909118423,Tshz1,Tshz1_Exon,18,84013120,84013169,84013120,84013121,50,-,CGCAAAAGTCCGGTTGCAGAGCTTACATTGGAATGTGGAGCCCAAGTCTT,"Exon (Tshz1-201/Tshz1, exon 2 of 2)",18,84011627,84086404,74778,2,Tshz1-201,73235,Tshz1-201;Tshz1-202;Tshz1-203;Tshz1-204,Tshz1;Tshz1;Tshz1;Tshz1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,18,110796,ENSMUSG00000046982,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26090,cg13434217,-0.0000101,0.00000331,-3.049425524,0.002490548,loss,ns,-0.0000029,0.00000563,-0.51498674,0.606929287,neg,ns,-0.002950028,0.001649873,-1.788033216,0.074747227,neg,ns,1.126404916,-0.0000282,0.0000567,-0.497056434,0.619501584,neg,ns,0.939162326,Sox5,Sox5_Intron,6,143839024,143839073,143839072,143839073,50,-,CCCAGCTCAAGCGCCTGTTTTAAGCAGAATGAATTAGCGGCATGCTGTCG,"Intron (Sox5-201/Sox5, intron 13 of 14)",6,143828425,144209480,381056,2,Sox5-201,370407,Sox5-201;Sox5-214;Sox5-205;Sox5-204;Sox5-202;Sox5-203;Sox5-209,Sox5;Sox5;Sox5;Sox5;Sox5;Sox5;Sox5,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,71,20678,ENSMUSG00000041540,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10585,cg20123809,-0.00000769,0.00000753,-1.021386662,0.307867691,loss,ns,-0.00000658,0.0000128,-0.514917213,0.606977816,neg,ns,0.006076449,0.003746231,1.622016893,0.105816283,pos,ns,0.975447498,-0.000209279,0.000128833,-1.624423876,0.105301655,neg,ns,0.85412941,Cltb,Cltb_Exon,13,54593920,54593969,54593920,54593921,50,-,CGGGACACATCTTTGCACTGCTTGCTGCTCTTGGGGTTGAAGTCACATAG,"Exon (Cltb-202/Cltb, exon 5 of 5)",13,54592401,54611344,18944,2,Cltb-202,17375,Cltb-202;Cltb-203;Cltb-201;Cltb-204;Higd2a-201;Nop16-201;Nop16-202;Nop16-203,Cltb;Cltb;Cltb;Cltb;Higd2a;Nop16;Nop16;Nop16,0;0;0;17323;3713;-3830;-3862;-3944,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,74325,ENSMUSG00000047547,conserved gene but different region,13,54593847,54593921,75,*,75,9,0.666666667,1.108374384,0.12,7.18E-08,CpGisland,TRUE,U11,Tr-P
762,cg04561332,-0.00000635,0.00000186,-3.407499775,0.000742161,loss,ns,-0.00000163,0.00000317,-0.514909013,0.606983539,neg,ns,-0.002083056,0.000928082,-2.244474098,0.025507072,neg,ns,1.593339386,-0.0000147,0.0000319,-0.459635501,0.646100043,neg,ns,0.036040756,Pum2,Pum2_fiveUTR,12,8674247,8674296,8674295,8674296,50,+,GGTGGCAGCCATGTTGTTGTGAGTCTCTGTGTCTCACCCTCGGTACTTCG,Promoter (<=1kb),12,8674259,8707368,33110,1,Pum2-211,0,Pum2-203;Pum2-216;Pum2-201;Pum2-202;Pum2-211;Pum2-207;Pum2-204;Pum2-210;Pum2-209;Pum2-212;Pum2-205;Pum2-208,Pum2;Pum2;Pum2;Pum2;Pum2;Pum2;Pum2;Pum2;Pum2;Pum2;Pum2;Pum2,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,11,80913,ENSMUSG00000020594,conserved gene and region,12,8673891,8674304,414,*,414,47,0.700483092,0.936877076,0.11352657,8.86E-39,CpGisland,TRUE,U1,Pr-A
17807,cg25970241,0.000000179,0.000000823,0.217113502,0.828262712,gain,ns,0.000000719,0.0000014,0.514640935,0.607170671,pos,ns,0.000615121,0.00040952,1.502054716,0.134100895,pos,ns,0.872568323,-0.0000139,0.0000141,-0.985300882,0.32524468,neg,ns,0.975351608,Ambra1,Ambra1_Exon,2,91810046,91810095,91810094,91810095,50,+,TACTACGCCCAGAGGATGATCCAGTATCTCTCACGGAGAGACAGTATTCG,"Exon (Ambra1-203/Ambra1, exon 10 of 19)",2,91730134,91918849,188716,1,Ambra1-203,79912,Ambra1-203;Ambra1-205;Ambra1-206;Ambra1-209;Ambra1-204;Ambra1-202;Ambra1-201;Ambra1-207;Ambra1-208,Ambra1;Ambra1;Ambra1;Ambra1;Ambra1;Ambra1;Ambra1;Ambra1;Ambra1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,12,228361,ENSMUSG00000040506,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1105,cg11893253,-0.0000248,0.00000888,-2.797515587,0.005471812,loss,ns,0.00000776,0.0000151,0.514638906,0.607172088,pos,ns,-0.011136033,0.004419202,-2.519919194,0.01224035,neg,ns,1.912206159,0.000170899,0.000151976,1.124511315,0.261666131,pos,ns,0.836837026,Gm14515,Gm14515_Intergenic_upstream,X,11585596,11585645,11585644,11585645,50,-,GCTCGATGTTGCGAGACACTGACTTCTTAGAGGTTTGCAGTAACAGCTCG,Distal Intergenic,20,11601354,11601569,216,1,Gm14515-201,-15758,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,21,28,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22648,cg26101296,-0.0000246,0.00000834,-2.945977162,0.003463292,loss,ns,0.00000729,0.0000142,0.514552918,0.607232117,pos,ns,0.014810799,0.004152324,3.566869832,0.000418351,pos,ns,3.378458684,-0.000624236,0.000142798,-4.371462344,0.0000169,neg,ns,0.77751961,Gm6035,Gm6035_Intergenic_upstream,13,115575271,115575320,115575319,115575320,50,+,TTGTTTCCAGGTCATATTTAGGGTTCACATATTTGCATAAAAGCATTTCG,Distal Intergenic,13,115528556,115529772,1217,2,Gm6035-201,-45499,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,547402,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5241,cg09130815,-0.000000233,0.000000572,-0.407682481,0.6837882,loss,ns,-0.0000005,0.000000972,-0.514535386,0.607244357,neg,ns,0.000187428,0.000284795,0.658115928,0.510952067,pos,ns,0.29161984,-0.00000989,0.00000979,-1.010088767,0.313240508,neg,ns,0.014178809,Atxn7l1,Atxn7l1_Exon,12,33147834,33147883,33147834,33147835,50,+,CGCAAAGTGCCCAGTCCGGAGGCGTTTCTGGGCAAACCCTGGTCCTCCTG,Promoter (<=1kb),12,33147693,33251146,103454,1,Atxn7l1-201,141,Atxn7l1-201;Atxn7l1-203;Atxn7l1-212;Atxn7l1-206;Atxn7l1-204;Atxn7l1-208,Atxn7l1;Atxn7l1;Atxn7l1;Atxn7l1;Atxn7l1;Atxn7l1,0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,24,380753,ENSMUSG00000020564,conserved gene and region,12,33147823,33147930,108,*,108,9,0.611111111,0.934615385,0.083333333,0.00000176,CpGisland,TRUE,U1,Pr-A
24336,cg06645865,0.0000511,0.00000773,6.602935845,1.75E-10,gain,yes,-0.00000676,0.0000131,-0.514238746,0.607451468,neg,ns,0.008832829,0.003848944,2.29487076,0.022408391,pos,ns,1.649589327,-0.000355096,0.000132365,-2.682705889,0.00769466,neg,ns,0.160160144,Pou3f1,Pou3f1_Intergenic_downstream,4,124672454,124672503,124672454,124672455,50,+,CGGTCCCACACCTTGCAGCTCATTATAAATATGCAGTCGCTGCTGGCGCT,Distal Intergenic,4,124656807,124660655,3849,1,Pou3f1-201,15647,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,11,85,18991,ENSMUSG00000090125,mapped to different genes,4,124672392,124672501,110,*,110,9,0.609090909,0.906593407,0.081818182,0.00000205,CpGisland,TRUE,U13,Hc-P
2048,cg02013561,0.000000353,0.00000124,0.284895921,0.775914114,gain,ns,0.00000108,0.00000211,0.51408116,0.607561505,pos,ns,0.000397326,0.0006169,0.644068571,0.520007208,pos,ns,0.283990637,-0.0000138,0.0000212,-0.649009723,0.516812612,neg,ns,0.965075578,Cdk13,Cdk13_Intron,13,17723132,17723181,17723180,17723181,50,-,AAACAAAGGCATACCTCTCAGCCATCTTACTATGATGCATTGCCTCAGCG,"Intron (Cdk13-207/Cdk13, intron 11 of 13)",13,17710315,17805097,94783,2,Cdk13-207,81916,Cdk13-207;Cdk13-201;Cdk13-205;Cdk13-204;Cdk13-202,Cdk13;Cdk13;Cdk13;Cdk13;Cdk13,0;0;0;0;27106,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,6,69562,ENSMUSG00000041297,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20592,cg23395530,0.000145563,0.0000222,6.566311255,2.17E-10,gain,yes,-0.0000194,0.0000377,-0.514075346,0.607565565,neg,ns,0.063617129,0.011033332,5.765903768,1.96E-08,pos,ns,7.707007835,-0.001748405,0.000379435,-4.607912288,0.00000595,neg,ns,0.506363735,Hipk1,Hipk1_Exon,3,103777267,103777316,103777315,103777316,50,-,ACGTGACTAGCAGAACCAAAGTCAATGACCTTCACTCGGTAGGGCTGGCG,"Exon (Hipk1-203/Hipk1, exon 2 of 16)",3,103739815,103791563,51749,2,Hipk1-203,14247,Hipk1-203;Hipk1-202;Hipk1-201;Hipk1-206;Hipk1-205,Hipk1;Hipk1;Hipk1;Hipk1;Hipk1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,11,15257,ENSMUSG00000008730,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21893,cg13987551,-0.00000372,0.00000167,-2.227667893,0.026620159,loss,ns,0.00000146,0.00000284,0.513929777,0.60766722,pos,ns,0.00068736,0.000831352,0.826797526,0.408987765,pos,ns,0.388289683,-0.00000289,0.0000286,-0.100918878,0.919680095,neg,ns,0.050162871,Cdkn2c,Cdkn2c_fiveUTR,4,109665271,109665320,109665319,109665320,50,-,GAGTAGAGCTTGGTAGTAAATACTAGTAAGATCTGCCTGCCAAAAGCCCG,Promoter (<=1kb),4,109660876,109665372,4497,2,Cdkn2c-201,52,Cdkn2c-201;Cdkn2c-202,Cdkn2c;Cdkn2c,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,8,13,12580,ENSMUSG00000028551,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
12112,cg21900211,-0.000000342,0.000000318,-1.07476804,0.283314403,loss,ns,-0.000000278,0.00000054,-0.51392841,0.607668175,neg,ns,0.000161133,0.0001583,1.017898712,0.309519839,pos,ns,0.509311509,-0.0000098,0.00000544,-1.799880271,0.072851722,neg,ns,0.008510241,Pias1,Pias1_Exon,9,62980809,62980858,62980857,62980858,50,+,GCGGCCGAATATTAGAAGTGAATTCGAGCTGCGCTTTACCTTTAGTTCCG,Promoter (<=1kb),9,62878368,62980879,102512,2,Pias1-201,21,Pias1-201;Pias1-202;Pias1-205,Pias1;Pias1;Pias1,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,12,56469,ENSMUSG00000032405,conserved gene and region,9,62980517,62981139,623,*,623,66,0.706260032,0.90840403,0.105939005,4.79E-52,CpGisland,TRUE,NA,NRS
14348,cg12933950,0.000071,0.000022,3.218635621,0.001424426,gain,ns,-0.0000192,0.0000375,-0.513905557,0.607684134,neg,ns,0.019131919,0.010973023,1.743541426,0.082230438,pos,ns,1.084967396,-0.00054422,0.000377361,-1.442172588,0.150263209,neg,ns,0.429941854,Rtn4rl1,Rtn4rl1_Intron,11,75215302,75215351,75215350,75215351,50,+,GTTTGTAACCAGCTTTATTGTTTAAGCCTGCTGGGATTTCATCAAAGGCG,"Intron (Rtn4rl1-201/Rtn4rl1, intron 1 of 1)",11,75193783,75267769,73987,1,Rtn4rl1-201,21519,Rtn4rl1-201,Rtn4rl1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,3,237847,ENSMUSG00000045287,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10636,cg22769330,-0.000079,0.0000109,-7.2681187,2.98E-12,loss,yes,0.00000949,0.0000185,0.513885744,0.607697971,pos,ns,-0.008888383,0.005409635,-1.643065418,0.101383252,neg,ns,0.994033781,-0.0000639,0.000186037,-0.343458942,0.73148604,neg,ns,0.745703663,Slc7a8,Slc7a8_Exon,14,54735818,54735867,54735818,54735819,50,+,CGATGTCAGGTTCCTGGAAATTCTCAAATGCATTCTTTGGCTCCAGCCAG,"Exon (Slc7a8-201/Slc7a8, exon 5 of 11)",14,54722209,54781930,59722,2,Slc7a8-201,46063,Slc7a8-201;Slc7a8-202,Slc7a8;Slc7a8,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,50934,ENSMUSG00000022180,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25801,cg06677854,0.000044,0.00000609,7.222428267,3.98E-12,gain,yes,-0.00000532,0.0000104,-0.513872181,0.607707443,neg,ns,0.009899375,0.003032435,3.264497222,0.001219201,pos,ns,2.913924853,-0.000272606,0.000104285,-2.61404804,0.009384488,neg,ns,0.177046923,Uncx,Uncx_Intergenic_downstream,5,139549506,139549555,139549554,139549555,50,-,TATTTGCAAATAAATTGAAAATAATCTGAAGGACAGCTTTCCTCCTCGCG,Downstream (1-2kb),5,139543898,139545268,1371,1,Uncx-202,5657,Uncx-201;Uncx-202,Uncx;Uncx,0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,59,88,22255,ENSMUSG00000029546,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
26724,cg10876267,-0.00000842,0.00000549,-1.533193105,0.126248168,loss,ns,0.00000479,0.00000933,0.513839782,0.60773007,pos,ns,-0.005871438,0.002733219,-2.148177032,0.032474301,neg,ns,1.488460187,0.0000718,0.000094,0.764029678,0.445430683,pos,ns,0.679268555,Huwe1,Huwe1_Exon,X,151904448,151904497,151904448,151904449,50,+,CGACTCAGTGGTGATTGCTGGGCAGCCTGAGGTGCTCAGTTCACAAGAGA,"Exon (Huwe1-201/Huwe1, exon 50 of 83)",20,151803327,151935417,132091,1,Huwe1-201,101121,Huwe1-201;Huwe1-202;Huwe1-219;Huwe1-208;Huwe1-215,Huwe1;Huwe1;Huwe1;Huwe1;Huwe1,0;0;0;-4348;-4348,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,22,28,59026,ENSMUSG00000025261,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11902,cg05968382,0.0000132,0.00000688,1.922278938,0.055486915,gain,ns,-0.00000601,0.0000117,-0.513829199,0.607737461,neg,ns,0.000183723,0.003424802,0.053644724,0.957252776,pos,ns,0.018973365,0.0000512,0.000117779,0.434584448,0.664166434,pos,ns,0.746637063,Gm34424,Gm34424_Intergenic_downstream,9,61646164,61646213,61646164,61646165,50,+,CGCCAGTGTTGCCTGTTGATCTGCAAGGTCCTGAGTGGCTACAGCTTCCC,Distal Intergenic,9,61533415,61534196,782,1,Gm34424-201,112749,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,6,102637673,ENSMUSG00000111381,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22334,cg09136462,-0.00000426,0.00000387,-1.099891807,0.272232655,loss,ns,-0.00000338,0.00000657,-0.513797372,0.607759689,neg,ns,0.002562283,0.001925772,1.330522637,0.184324024,pos,ns,0.734418056,-0.0000897,0.0000662,-1.354379214,0.176601781,neg,ns,0.898877072,Brpf1,Brpf1_Exon,6,113309897,113309946,113309897,113309898,50,+,CGAAAGGTCTACAAGAGTTACAGTGGTATTGAGTACCACCTGTACCACTA,"Exon (Brpf1-204/Brpf1, exon 2 of 14)",6,113307137,113324857,17721,1,Brpf1-204,2760,Brpf1-204;Brpf1-209;Brpf1-203;Brpf1-202;Brpf1-201;Brpf1-210;Brpf1-208;Cpne9-201;Cpne9-205;Cpne9-206,Brpf1;Brpf1;Brpf1;Brpf1;Brpf1;Brpf1;Brpf1;Cpne9;Cpne9;Cpne9,0;0;0;0;0;0;0;27590;27590;21393,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,16,78783,ENSMUSG00000001632,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2344,cg22330517,-0.00000164,0.0000146,-0.112537427,0.910470133,loss,ns,-0.0000127,0.0000247,-0.513769024,0.607779487,neg,ns,-0.010609977,0.007244783,-1.464499028,0.144071006,neg,ns,0.841423412,0.000489143,0.000249147,1.963268813,0.050508661,pos,ns,0.252856181,Tfap2d,Tfap2d_fiveUTR,1,19103237,19103286,19103285,19103286,50,+,GCTTTCGGAGAAACCCAACATGTCAACTACCTTTCCGGGACTAGTCCACG,Promoter (<=1kb),1,19103022,19166346,63325,1,Tfap2d-201,215,Tfap2d-201;Tfap2d-202,Tfap2d;Tfap2d,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,23,226896,ENSMUSG00000042596,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
23413,cg27152481,-0.00000413,0.00000187,-2.214555539,0.027517646,loss,ns,0.00000163,0.00000317,0.513760365,0.607785535,pos,ns,0.00121054,0.00092868,1.303506679,0.19336906,pos,ns,0.713613014,-0.0000456,0.0000319,-1.426581265,0.154706965,neg,ns,0.058320467,Sp4,Sp4_Exon,12,118300732,118300781,118300780,118300781,50,+,ATTCTCTGGCTCAGAGGTTTTCCCTCCTTCTGTAGCCATCGCCGCTGCCG,Promoter (<=1kb),12,118234933,118301370,66438,2,Sp4-201,589,Sp4-201;Sp4-203;Sp4-202,Sp4;Sp4;Sp4,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,14,20688,ENSMUSG00000025323,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
20017,cg06140439,0.000000305,0.00000356,0.08583863,0.931650111,gain,ns,-0.0000031,0.00000604,-0.513624658,0.607880318,neg,ns,-0.000188605,0.001770347,-0.106535781,0.915226176,neg,ns,0.038471567,0.000000261,0.0000609,0.004286531,0.996582611,pos,ns,0.917646572,Hdac5,Hdac5_threeUTR,11,102202589,102202638,102202637,102202638,50,+,CTGGTGCTGTTGTTGCATGACCAGCTGCTGCAGGGCCTGGGGACTCTGCG,3' UTR,11,102194432,102230166,35735,2,Hdac5-203,27528,Hdac5-203;Hdac5-201;Hdac5-218;Hdac5-216;Hdac5-205;Hdac5-202;Hdac5-204;Hdac5-212;Hdac5-213;Hdac5-219;Hdac5-207;Hdac5-210;Hdac5-220;Hdac5-209;Hdac5-217,Hdac5;Hdac5;Hdac5;Hdac5;Hdac5;Hdac5;Hdac5;Hdac5;Hdac5;Hdac5;Hdac5;Hdac5;Hdac5;Hdac5;Hdac5,0;0;0;0;0;0;0;-4510;-3694;-3096;-2232;-1773;27504;16290;16291,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,3,15184,ENSMUSG00000008855,conserved gene but different region,11,102202637,102202752,116,*,116,9,0.681034483,0.671814672,0.077586207,0.00000318,CpGisland,TRUE,U10,Tr-S
19388,cg11311015,-0.00000289,0.00000153,-1.892651489,0.059335655,loss,ns,-0.00000133,0.00000259,-0.513622093,0.607882109,neg,ns,0.000918801,0.0007601,1.208788562,0.227665266,pos,ns,0.642703223,-0.0000425,0.0000261,-1.626992357,0.1047547,neg,ns,0.974773905,Foxn3,Foxn3_threeUTR,12,99196449,99196498,99196497,99196498,50,+,GGACCTTCCTGGCCTTGGCGAAGTGCTGGCGCTTCTTGTGCTGGGATGCG,3' UTR,12,99190078,99393797,203720,2,Foxn3-201,197299,Foxn3-201;Foxn3-209;Foxn3-202;Foxn3-212;Foxn3-211;Foxn3-206,Foxn3;Foxn3;Foxn3;Foxn3;Foxn3;Foxn3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,17,71375,ENSMUSG00000033713,conserved gene but different region,12,99196278,99196548,271,*,271,19,0.597785978,0.785267653,0.070110701,6.73E-12,CpGisland,TRUE,NA,NRS
2541,cg10991450,0.0000017,0.00000146,1.163374394,0.245572317,gain,ns,-0.00000128,0.00000248,-0.513447847,0.608003819,neg,ns,-0.0000557,0.000727626,-0.076482862,0.939084285,neg,ns,0.027295427,-0.000000355,0.000025,-0.014177119,0.988697794,neg,ns,0.969215634,Pkhd1,Pkhd1_Intron,1,20428629,20428678,20428629,20428630,50,+,CGGAAAATCAATTTGGCTGGCAAACGAGAGCCCCCAAGAGCTTAGTCCAC,"Intron (Pkhd1-201/Pkhd1, intron 36 of 66)",1,20057779,20618064,560286,2,Pkhd1-201,189386,Pkhd1-201,Pkhd1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,25,241035,ENSMUSG00000043760,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4777,cg19860789,0.0000173,0.00000639,2.707127534,0.007163112,gain,ns,-0.00000558,0.0000109,-0.513402216,0.608035695,neg,ns,0.004947781,0.003182291,1.554785846,0.12101737,pos,ns,0.917152291,0.000161747,0.000109439,1.477971462,0.140430684,pos,ns,0.111099643,Mecom,Mecom_Intron,3,30513958,30514007,30513958,30513959,50,-,CGATTTTTCTTGTCTGCATTGTTTTCGGGAGGGGTTGCATTTAGGGGTTA,"Intron (Mecom-208/Mecom, intron 2 of 8)",3,29977344,30548008,570665,2,Mecom-208,34001,Mecom-212;Mecom-213;Mecom-207;Mecom-208;Mecom-211;Mecom-209,Mecom;Mecom;Mecom;Mecom;Mecom;Mecom,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,80,14013,ENSMUSG00000027684,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
3076,cg13026859,-0.0000233,0.00000808,-2.88521155,0.00418574,loss,ns,0.00000705,0.0000137,0.513317418,0.608094931,pos,ns,-0.005213409,0.00402213,-1.296181224,0.195877191,neg,ns,0.708016132,-0.0000867,0.000138321,-0.627108301,0.531049832,neg,ns,0.511380472,Gm11881,Gm11881_Intergenic_upstream,4,22564629,22564678,22564629,22564630,50,+,CGGTTTTGGCACTGGTTTTGGGTGTTAAGTATCAACTAACATGTTTATGC,Distal Intergenic,4,22528438,22529009,572,2,Gm11881-201,-35620,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19186,cg22320085,0.000000739,0.00000459,0.161100677,0.872119044,gain,ns,-0.000004,0.00000779,-0.513285015,0.608117567,neg,ns,0.002188141,0.002282842,0.958516339,0.338549407,pos,ns,0.470377942,-0.000158907,0.0000785,-2.024116502,0.043815498,neg,ns,0.870319649,Gm32308,Gm32308_Intergenic_downstream,6,98767881,98767930,98767881,98767882,50,+,CGTCTGGTGGCTCATGATACAAACAGAGCACACTAGAAAACCCAAACACA,Distal Intergenic,6,98757749,98758028,280,1,Gm32308-201,10132,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,10,102634810,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27089,cg22521168,0.0000616,0.00000634,9.718064498,1.16E-19,gain,yes,-0.00000553,0.0000108,-0.513142494,0.608217134,neg,ns,0.008895641,0.003154732,2.81977732,0.005115181,pos,ns,2.291138968,-0.000235994,0.000108491,-2.175238689,0.030367661,neg,ns,0.138776078,Vstm2l,Vstm2l_Intron,2,157941422,157941471,157941470,157941471,50,-,ACTCCATTAGCGCCTTGTAGGGTTGACAAATGAAGGATAATTAATATCCG,"Intron (Vstm2l-201/Vstm2l, intron 3 of 3)",2,157914653,157944719,30067,1,Vstm2l-201,26769,Vstm2l-201,Vstm2l,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,5,277432,ENSMUSG00000037843,conserved gene and region,2,157941357,157941597,241,*,241,17,0.576763486,0.864345992,0.070539419,9.64E-11,CpGisland,TRUE,U13,Hc-P
17574,cg23065737,-0.00000459,0.00000341,-1.346895712,0.178997621,loss,ns,-0.00000297,0.00000578,-0.513142145,0.608217378,neg,ns,-0.000920943,0.001694755,-0.54340746,0.587239829,neg,ns,0.231184497,-0.0000356,0.0000583,-0.61069606,0.541848292,neg,ns,0.939104567,Gm12643,Gm12643_Intergenic_downstream,4,91094514,91094563,91094514,91094515,50,+,CGGAAATTGGAAATTGACACAGCTGTTTTTGTTTCACTGTAACCATTTTT,Distal Intergenic,4,91037900,91038273,374,1,Gm12643-201,56614,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,108169000,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27359,cg21896777,0.0000603,0.0000096,6.28535593,1.11E-09,gain,yes,-0.00000837,0.0000163,-0.513136556,0.608221282,neg,ns,0.00910094,0.004776339,1.905421558,0.057650296,pos,ns,1.239198456,-0.000109451,0.000164258,-0.666335635,0.505692168,neg,ns,0.235113428,Cdh22,Cdh22_Promoter,2,165242996,165243045,165242996,165242997,50,-,CGGCAGCAAGAAGCAGATTATAAATTAGAATCATTTTCGCCAACTGAAAC,Promoter (8-9kb),2,165111507,165234853,123347,2,Cdh22-201,-8192,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,7,23,104010,ENSMUSG00000053166,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
8823,cg14927488,-0.00000677,0.0000018,-3.769152737,0.000196078,loss,ns,-0.00000157,0.00000305,-0.513103281,0.60824453,neg,ns,0.000147951,0.000894315,0.165435023,0.868709422,pos,ns,0.061125468,-0.0000405,0.0000308,-1.317668695,0.188587535,neg,ns,0.975781354,Vegfa,Vegfa_Intergenic_downstream,17,45897498,45897547,45897546,45897547,50,-,CCCAAGACAGTTATAACATATGTCCATTTTAGACTTTGGAAAATAGGGCG,Distal Intergenic,17,46018712,46021372,2661,2,Vegfa-208,123874,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,7,22339,ENSMUSG00000023951,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6028,cg17314023,-0.00000231,0.00000151,-1.53012165,0.127006384,loss,ns,0.00000131,0.00000256,0.512978902,0.60833143,pos,ns,0.000437974,0.000750544,0.58354215,0.559952703,pos,ns,0.251848655,-0.0000396,0.0000258,-1.532900308,0.126320294,neg,ns,0.950291471,Cdyl,Cdyl_Exon,13,35863349,35863398,35863349,35863350,50,+,CGGACAGAGTCCAGATGGCTGTTCTACCGTTATGTTTCCCAAGATAATGG,"Exon (Cdyl-201/Cdyl, exon 8 of 10)",13,35659833,35874063,214231,1,Cdyl-201,203516,Cdyl-201;Cdyl-202,Cdyl;Cdyl,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,12593,ENSMUSG00000059288,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5943,cg03123596,-0.0000133,0.00000387,-3.444701193,0.000650435,loss,ns,0.00000337,0.00000657,0.512497351,0.608667929,pos,ns,0.001587688,0.001925452,0.824579482,0.410244382,pos,ns,0.386957357,-0.000119792,0.0000662,-1.809104746,0.071403349,neg,ns,0.921213841,Slit3,Slit3_Intron,11,35530098,35530147,35530146,35530147,50,-,AAAAATGGTGCTGGTTTTAATTACAATTCTAAATAGCTTCATAACCATCG,"Intron (Slit3-201/Slit3, intron 5 of 35)",11,35121224,35708507,587284,1,Slit3-201,408874,Slit3-201,Slit3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,21,20564,ENSMUSG00000056427,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9473,cg13228972,0.000000964,0.0000017,0.566086637,0.571744437,gain,ns,0.00000148,0.00000289,0.51248811,0.608674387,pos,ns,0.001438673,0.000847256,1.698037754,0.090504107,pos,ns,1.043331713,-0.000037,0.0000291,-1.268911714,0.205424479,neg,ns,0.08500125,Trim41,Trim41_fiveUTR,11,48816598,48816647,48816646,48816647,50,+,ACACCGCCTCCTCCTGAAGGGTCTGCACAGGGTTGGGTGTCATGGCAACG,Promoter (<=1kb),11,48806404,48817353,10950,2,Trim41-201,706,Trim41-201;Trim41-202;Trim41-204;Trim41-203,Trim41;Trim41;Trim41;Trim41,0;-4203;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,2,211007,ENSMUSG00000040365,conserved gene but different region,11,48816646,48817625,980,*,980,86,0.679591837,0.765068991,0.087755102,4.37E-60,CpGisland,TRUE,NA,NRS
7326,cg26234822,-0.00000195,0.00000149,-1.305023284,0.192852771,loss,ns,-0.0000013,0.00000253,-0.512462338,0.608692399,neg,ns,-0.000189879,0.000742119,-0.255860487,0.798228258,neg,ns,0.097872902,0.0000119,0.0000255,0.465191747,0.642120755,pos,ns,0.948596269,Rbm27,Rbm27_Exon,18,42313967,42314016,42314015,42314016,50,+,ATAGGACAGCCCATGTACTCTCGTGAACATGGTGCTGCTGCATCTGAGCG,"Exon (Rbm27-201/Rbm27, exon 9 of 20)",18,42275353,42341542,66190,1,Rbm27-201,38614,Rbm27-201;Rbm27-202;Rbm27-203;Rbm27-205,Rbm27;Rbm27;Rbm27;Rbm27,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,10,225432,ENSMUSG00000024491,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1887,cg14867046,0.0000685,0.0000132,5.197672825,0.000000367,gain,yes,-0.0000115,0.0000224,-0.512397325,0.608737836,neg,ns,0.024987725,0.006559332,3.809492243,0.000167901,pos,ns,3.774947692,-0.000591987,0.000225575,-2.624347983,0.009111431,neg,ns,0.316371654,B230303A05Rik,B230303A05Rik_Intron,13,16011636,16011685,16011684,16011685,50,+,CCAGCTCACTAATTGTGATTGAAAACACCAGCTCCCCAGCAATGCACACG,"Intron (B230303A05Rik-201/B230303A05Rik, intron 1 of 3)",13,15813548,16023360,209813,2,B230303A05Rik-201,11675,B230303A05Rik-201;B230303A05Rik-204;Inhba-201;Inhba-202,B230303A05Rik;B230303A05Rik;Inhba;Inhba,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,6,100503142,ENSMUSG00000113701,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4224,cg12946524,0.00000488,0.0000033,1.479425894,0.140041979,gain,ns,-0.00000287,0.0000056,-0.512318344,0.608793037,neg,ns,-0.001094746,0.001640227,-0.667435401,0.504990591,neg,ns,0.296716713,-0.0000155,0.0000564,-0.275497715,0.783117425,neg,ns,0.056873403,Fndc3b,Fndc3b_Exon,3,27711268,27711317,27711316,27711317,50,+,ATAACTACCAGGAGGGTTTGATGGGGGATTCCGCCATGTCAATGATGTCG,Promoter (<=1kb),3,27494432,27711307,216876,2,Fndc3b-202,0,Fndc3b-204;Fndc3b-201;Fndc3b-202;Fndc3b-203,Fndc3b;Fndc3b;Fndc3b;Fndc3b,0;0;0;-29,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,72007,ENSMUSG00000039286,conserved gene but different region,3,27711299,27711405,107,*,107,11,0.635514019,1.026155187,0.102803738,7.87E-09,CpGisland,TRUE,U1,Pr-A
6589,cg04385386,-0.0000669,0.00000856,-7.807597612,9.05E-14,loss,yes,0.00000745,0.0000145,0.512295919,0.608808711,pos,ns,-0.011503679,0.004262016,-2.699117016,0.007333698,neg,ns,2.134677002,0.000205073,0.00014657,1.399146723,0.162768747,pos,ns,0.859965708,Gm48172,Gm48172_Intergenic_upstream,10,37812731,37812780,37812731,37812732,50,-,CGGGTGTCAGCTGGTGAATTATAACACTGGCAGACAGGACTGAGATAAGC,Distal Intergenic,10,37452452,37452680,229,2,Gm48172-201,-360100,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5665,cg08285151,-0.0000614,0.0000101,-6.076080495,3.61E-09,loss,yes,-0.00000879,0.0000172,-0.512115781,0.608934623,neg,ns,-0.015687335,0.005027392,-3.120372496,0.001976177,neg,ns,2.704174147,0.000441147,0.000172892,2.551579666,0.011203381,pos,ns,0.846045899,Hdac9,Hdac9_Intron,12,34529327,34529376,34529375,34529376,50,+,AAATAATACTGGAAGCTTTTGCTCATAATGTGGTTTCTGCCTCACCCACG,"Intron (Hdac9-210/Hdac9, intron 3 of 26)",12,34095877,34917095,821219,2,Hdac9-210,387719,Hdac9-205;Hdac9-204;Hdac9-206;Hdac9-210;Hdac9-207;Hdac9-212;Hdac9-201;Hdac9-211;Hdac9-203;Hdac9-202;Hdac9-209,Hdac9;Hdac9;Hdac9;Hdac9;Hdac9;Hdac9;Hdac9;Hdac9;Hdac9;Hdac9;Hdac9,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,19,31,79221,ENSMUSG00000004698,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22659,cg14593595,-0.0000491,0.0000105,-4.663062227,0.00000464,loss,ns,0.00000916,0.0000179,0.512004927,0.609012113,pos,ns,-0.012004769,0.005241282,-2.290425908,0.022667802,neg,ns,1.644590586,0.000009,0.000180247,0.049933819,0.960207284,pos,ns,0.835047089,Maf,Maf_Intergenic_downstream,8,115632815,115632864,115632863,115632864,50,-,TTAGTGGCCACAGCACGATTCTGAAAATATACCTTCCTTACGATTTAACG,Distal Intergenic,8,115682942,115707096,24155,2,Maf-201,74281,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,23,17132,ENSMUSG00000055435,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15272,cg16438269,0.0000532,0.0000115,4.642829749,0.00000508,gain,ns,0.00000996,0.0000195,0.511997446,0.609017342,pos,ns,0.015242041,0.005701677,2.673255589,0.007909706,pos,ns,2.101839683,-0.000442783,0.00019608,-2.258170268,0.02463011,neg,ns,0.539445795,Zfp36l1,Zfp36l1_Exon,12,80110112,80110161,80110160,80110161,50,+,CCGATGGTGTGGAAGGTGCGGCACAGCTCCGTCTTGTACTTGGGGTGGCG,"Exon (Zfp36l1-201/Zfp36l1, exon 2 of 2)",12,80107754,80113013,5260,2,Zfp36l1-201,2852,Zfp36l1-201;Zfp36l1-202;Zfp36l1-204;Zfp36l1-203,Zfp36l1;Zfp36l1;Zfp36l1;Zfp36l1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,8,12192,ENSMUSG00000021127,conserved gene but different region,12,80110016,80110382,367,*,367,38,0.667574932,0.944467019,0.103542234,8.67E-30,CpGisland,TRUE,U1,Pr-A
14745,cg08965464,0.0000243,0.00000435,5.601258676,0.000000047,gain,yes,-0.00000378,0.00000738,-0.511988115,0.609023865,neg,ns,0.003878509,0.00216295,1.793157254,0.07392248,pos,ns,1.131223469,-0.000191683,0.0000744,-2.576951971,0.010429731,neg,ns,0.036978861,Epha4,Epha4_fiveUTR,1,77515048,77515097,77515048,77515049,50,+,CGCTGCTCCTGCCGCTTCTATCCCAGTGGAATAAATGCTTAAGTTAGGAG,Promoter (<=1kb),1,77367185,77515088,147904,2,Epha4-201,0,Epha4-201;Epha4-205;Epha4-204;Epha4-207;Epha4-206;Epha4-202,Epha4;Epha4;Epha4;Epha4;Epha4;Epha4,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,9,13838,ENSMUSG00000026235,conserved gene and region,1,77514904,77515061,158,*,158,14,0.569620253,1.092885376,0.088607595,2.93E-10,CpGisland,TRUE,U3,Pr-B
3728,cg26794640,-0.0000309,0.00000689,-4.486251837,0.0000102,loss,ns,-0.00000599,0.0000117,-0.511911838,0.609077187,neg,ns,-0.006168906,0.00343032,-1.798347074,0.073094781,neg,ns,1.136113631,-0.0000387,0.000117968,-0.328343193,0.742873861,neg,ns,0.662490152,Nrarp,Nrarp_Promoter,2,25177793,25177842,25177841,25177842,50,-,TCTACCAGGTGTCTGGGCTGCTGGGAAGAAACACTCTCCTCTTTCCCACG,Promoter (2-3kb),2,25180758,25183339,2582,1,Nrarp-201,-2965,AL732309.1-201;Nrarp-201,AL732309.1;Nrarp,61512;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,2,67122,ENSMUSG00000078202,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27601,cg13137024,0.0000305,0.0000449,0.67950346,0.497325969,gain,ns,-0.000039,0.0000762,-0.511859495,0.60911378,neg,ns,0.008923688,0.022326651,0.399687712,0.689661786,pos,ns,0.161363838,-0.000602848,0.000767812,-0.785150604,0.432964902,neg,ns,0.821891769,Dedd,Dedd_Exon,1,171338867,171338916,171338867,171338868,50,+,CGCTATGTGACCCCCAGAGCCCTCAGTGATCCAGAACCAAGGCCTCCCCA,"Exon (Dedd-204/Dedd, exon 4 of 6)",1,171329145,171342331,13187,1,Dedd-204,9722,Dedd-204;Dedd-203;Dedd-201;Dedd-209;Dedd-206;Dedd-208;Dedd-210;Dedd-202;Dedd-207;Dedd-205;Nit1-206;Nit1-203;Nit1-201;Nit1-205;Nit1-202;Nit1-208;Nit1-204,Dedd;Dedd;Dedd;Dedd;Dedd;Dedd;Dedd;Dedd;Dedd;Dedd;Nit1;Nit1;Nit1;Nit1;Nit1;Nit1;Nit1,0;0;0;0;0;8781;8512;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,4,21945,ENSMUSG00000013973,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21789,cg20730598,-0.0000306,0.00000616,-4.961345447,0.00000116,loss,yes,-0.00000536,0.0000105,-0.511817455,0.60914317,neg,ns,-0.006273942,0.00306795,-2.044994551,0.041699529,neg,ns,1.379868847,-0.000000995,0.000105507,-0.0094342,0.992478778,neg,ns,0.863336058,Lmo1,Lmo1_Intron,7,109161982,109162031,109162030,109162031,50,+,AAAAGAAATATTACTGTCCACTTTCTAAATCAATATAACACTGCTCCACG,"Intron (Lmo1-201/Lmo1, intron 1 of 3)",7,109138572,109170519,31948,2,Lmo1-201,8488,Lmo1-201;Lmo1-202;Lmo1-203,Lmo1;Lmo1;Lmo1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,66,109594,ENSMUSG00000036111,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7876,cg21827016,-0.000035,0.0000075,-4.667021672,0.00000455,loss,ns,-0.00000652,0.0000127,-0.511811188,0.609147551,neg,ns,-0.005359579,0.003732095,-1.436077835,0.151988517,neg,ns,0.818189223,0.0000849,0.000128346,0.661571465,0.508737329,pos,ns,0.850752226,Ldb2,Ldb2_Intron,5,44580174,44580223,44580222,44580223,50,+,ATTAATTTATGCCACTTTGTGGAATTATTTCCTCAGAGTGTTTAGGAACG,"Intron (Ldb2-207/Ldb2, intron 2 of 8)",5,44472132,44799619,327488,2,Ldb2-207,219396,Ldb2-207;Ldb2-201;Ldb2-204;Ldb2-205;Ldb2-206;Ldb2-203,Ldb2;Ldb2;Ldb2;Ldb2;Ldb2;Ldb2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,9,16826,ENSMUSG00000039706,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23734,cg27228973,-0.00000542,0.0000063,-0.861668505,0.389535979,loss,ns,-0.00000547,0.0000107,-0.511803447,0.609152964,neg,ns,-0.001217759,0.003133279,-0.388653124,0.697799557,neg,ns,0.156269311,-0.0000359,0.000107753,-0.33276297,0.739538131,neg,ns,0.086093803,Foxo6,Foxo6_Intergenic_downstream,4,120243117,120243166,120243117,120243118,50,+,CGTGCCGACAGGCAGACCAGGAGCTGCTGCCACATGAATCACTTGAACTT,Distal Intergenic,4,120267079,120287349,20271,2,Foxo6-201,44183,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,42,329934,ENSMUSG00000052135,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19799,cg20855763,-0.0000052,0.00000155,-3.354009597,0.000895369,loss,ns,0.00000135,0.00000263,0.511628607,0.609275203,pos,ns,0.00094646,0.000771621,1.226587693,0.22090841,pos,ns,0.65578775,-0.0000569,0.0000265,-2.143872986,0.032820692,neg,ns,0.035835635,Retreg3,Retreg3_fiveUTR,11,101119632,101119681,101119632,101119633,50,+,CGTAAGGCCCCAGCACCTCCACCAGGGCCCGCTGCGCCGCCTCAACCTGC,Promoter (<=1kb),11,101096322,101119843,23522,2,Retreg3-202,162,Retreg3-202;Retreg3-205;Retreg3-201;Retreg3-203;Retreg3-204;Tubg1-201;Tubg1-202,Retreg3;Retreg3;Retreg3;Retreg3;Retreg3;Tubg1;Tubg1,0;0;0;0;0;-257;-4819,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,1,67998,ENSMUSG00000017802,conserved gene but different region,11,101119434,101119756,323,*,323,25,0.693498452,0.651209677,0.077399381,1.59E-16,CpGisland,TRUE,U1,Pr-A
23836,cg03581876,-0.00000137,0.00000163,-0.839457963,0.401859265,loss,ns,0.00000141,0.00000277,0.511325405,0.609487212,pos,ns,0.001940382,0.000810124,2.395167612,0.017205944,pos,ns,1.764321502,-0.0000539,0.0000279,-1.936334528,0.053735456,neg,ns,0.04428933,En1,En1_Promoter,1,120600091,120600140,120600091,120600092,50,-,CGACGTTAAGCCGTCAATAAAGTCATTTCTGTAAATGGTGTCTCCAAAGG,Promoter (2-3kb),1,120602418,120607992,5575,1,En1-201,-2327,En1-201,En1,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,23,36,13798,ENSMUSG00000058665,conserved gene and region,1,120599977,120600103,127,*,127,10,0.503937008,1.241446725,0.078740158,0.000000615,CpGisland,TRUE,U13,Hc-P
17285,cg09692427,0.0000071,0.00000975,0.728806594,0.466670198,gain,ns,0.00000847,0.0000166,0.511291637,0.609510826,pos,ns,-0.003825622,0.004851877,-0.788482824,0.431016886,neg,ns,0.365505715,0.0000178,0.000166856,0.106452969,0.915291823,pos,ns,0.736538206,Ankfn1,Ankfn1_Exon,11,89421190,89421239,89421190,89421191,50,-,CGTCGTCTGAGGCAGGGAGCAGGAGAAGAAAGGACACATTGTGACCCATT,"Exon (Ankfn1-208/Ankfn1, exon 19 of 22)",11,89391238,89841266,450029,2,Ankfn1-208,420027,Ankfn1-201;Ankfn1-207;Ankfn1-208;Ankfn1-206;Ankfn1-202;Ankfn1-203,Ankfn1;Ankfn1;Ankfn1;Ankfn1;Ankfn1;Ankfn1,-2242;-2242;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,15,382543,ENSMUSG00000047773,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4734,cg19098867,-0.000014,0.0000116,-1.198417638,0.231669836,loss,ns,0.0000101,0.0000198,0.511131375,0.609622902,pos,ns,-0.006492813,0.005797396,-1.119953365,0.263600578,neg,ns,0.579053642,0.0000605,0.000199372,0.303471667,0.761734005,pos,ns,0.814714862,Mecom,Mecom_Intron,3,30349540,30349589,30349588,30349589,50,+,GTTGCCGTTCTGAAGAGCACAGTAATTACTAGCTGTTAATTGCTCTCTCG,"Intron (Mecom-212/Mecom, intron 1 of 15)",3,29951299,30509733,558435,2,Mecom-212,160144,Mecom-212;Mecom-213;Mecom-207;Mecom-208;Mecom-211;Mecom-209,Mecom;Mecom;Mecom;Mecom;Mecom;Mecom,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,80,14013,ENSMUSG00000027684,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9775,cg02946452,-0.0000305,0.0000112,-2.721484774,0.006866304,loss,ns,0.00000974,0.0000191,0.511120305,0.609630644,pos,ns,-0.003037771,0.005584594,-0.54395563,0.586863001,neg,ns,0.23146327,-0.0000914,0.000192054,-0.476073895,0.634357073,neg,ns,0.771309815,Nell1,Nell1_Exon,7,50826303,50826352,50826351,50826352,50,+,TTCCCGCTGCGTTAACCTGCCAGGGTGGTACCACTGTGAGTGCAGAAGCG,"Exon (Nell1-201/Nell1, exon 16 of 20)",7,49974864,50866608,891745,1,Nell1-201,851439,Nell1-201;Nell1-202,Nell1;Nell1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,6,338352,ENSMUSG00000055409,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14457,cg17734714,-0.00000243,0.00000424,-0.573437121,0.566764516,loss,ns,-0.00000368,0.0000072,-0.511112948,0.609635789,neg,ns,-0.006747613,0.002109674,-3.198414446,0.00152471,neg,ns,2.816812665,0.000195551,0.0000726,2.695334467,0.007415514,pos,ns,0.831400168,Zc3h3,Zc3h3_Intron,15,75756192,75756241,75756240,75756241,50,+,AATATGACAATAAAATGATAGCCGTATGGTCGCAAATTTGCAGCCCGCCG,"Intron (Zc3h3-201/Zc3h3, intron 11 of 11)",15,75754430,75841915,87486,2,Zc3h3-201,85674,Zc3h3-201,Zc3h3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,18,223642,ENSMUSG00000075600,conserved gene and region,15,75756178,75756306,129,*,129,12,0.488372093,1.592592593,0.093023256,4.32E-09,CpGisland,TRUE,NA,NRS
25337,cg26163855,-0.00000266,0.000000915,-2.906540358,0.003917826,loss,ns,-0.000000795,0.00000155,-0.511107539,0.609639572,neg,ns,-0.000364149,0.000455433,-0.799565971,0.424574539,neg,ns,0.372046053,-0.0000267,0.0000157,-1.702359471,0.089690457,neg,ns,0.010255495,Srrm1,Srrm1_fiveUTR,4,135353098,135353147,135353098,135353099,50,-,CGGAAAAATCCCGCGTCCATCTTGCCGCCTCGCTCGGAGATCGCTCCCTA,Promoter (<=1kb),4,135322033,135353136,31104,2,Srrm1-201,0,Srrm1-203;Srrm1-202;Srrm1-208;Srrm1-201;Srrm1-212;Srrm1-205;Srrm1-207;Srrm1-206,Srrm1;Srrm1;Srrm1;Srrm1;Srrm1;Srrm1;Srrm1;Srrm1,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,8,51796,ENSMUSG00000028809,conserved gene but different region,4,135352679,135353519,841,*,841,99,0.688466112,0.99499271,0.117717004,8.24E-83,CpGisland,TRUE,U1,Pr-A
13315,cg14522627,0.000160769,0.0000176,9.136197627,8.66E-18,gain,yes,-0.0000153,0.0000299,-0.511086262,0.609654452,neg,ns,0.022791641,0.008758182,2.602325538,0.009704165,pos,ns,2.013041846,0.000106863,0.000301193,0.354797542,0.722982517,pos,ns,0.110587516,Egr3,Egr3_Intron,14,70078538,70078587,70078538,70078539,50,+,CGCTCCGGGTCTGAAACTACCTGTAGCTGCAGCTACCTGCCCGCCCCACC,"Intron (Egr3-201/Egr3, intron 2 of 2)",14,70077203,70079955,2753,1,Egr3-201,1335,Egr3-201;Egr3-204;Egr3-203;Egr3-202,Egr3;Egr3;Egr3;Egr3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,19,13655,ENSMUSG00000033730,conserved gene and region,14,70078306,70079015,710,*,710,70,0.654929578,0.919416901,0.098591549,8.62E-53,CpGisland,TRUE,U3,Pr-B
22058,cg13994175,-0.0000044,0.00000317,-1.386107431,0.166710294,loss,ns,-0.00000276,0.00000539,-0.510972152,0.609734261,neg,ns,-0.00221483,0.001579936,-1.401848242,0.16196103,neg,ns,0.79058947,0.0000496,0.0000543,0.913485442,0.36169719,pos,ns,0.479766497,Klhl18,Klhl18_Exon,9,110476525,110476574,110476525,110476526,50,-,CGCGACTAGGCAACTCAGACACGGAGAAGTGCACCAGATCCTCCAGCTCC,Promoter (<=1kb),9,110425926,110476694,50769,2,Klhl18-201,120,Kif9-205;Kif9-203;Kif9-201;Kif9-204;Kif9-202;Klhl18-201;Klhl18-202;Klhl18-203,Kif9;Kif9;Kif9;Kif9;Kif9;Klhl18;Klhl18;Klhl18,-384;-420;-420;-420;-420;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,270201,ENSMUSG00000054792,conserved gene but different region,9,110476419,110476815,397,*,397,34,0.634760705,0.916983696,0.085642317,9.01E-24,CpGisland,TRUE,U1,Pr-A
7172,cg18766286,-0.00000248,0.00000183,-1.35763938,0.175565583,loss,ns,0.00000159,0.00000311,0.510906981,0.609779842,pos,ns,0.000432619,0.000909685,0.475569988,0.634715694,pos,ns,0.197420763,-0.00000194,0.0000313,-0.061923619,0.950663564,neg,ns,0.946624498,Lcor,Lcor_Exon,19,41558790,41558839,41558838,41558839,50,-,ATCAGTACAGCTATAGCTCTTTGGTAATGGGTTCACAAACGGAGAGCGCG,"Exon (Lcor-201/Lcor, exon 8 of 8)",19,41482637,41562261,79625,1,Lcor-201,76153,Lcor-201;Lcor-204;Lcor-206;Lcor-202;Lcor-205,Lcor;Lcor;Lcor;Lcor;Lcor,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,25,212391,ENSMUSG00000025019,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13220,cg04758190,-0.0000476,0.00000509,-9.355809482,1.73E-18,loss,yes,0.00000441,0.00000864,0.510305798,0.610200398,pos,ns,-0.006380269,0.00253193,-2.519922867,0.012240225,neg,ns,1.912210597,0.000165109,0.0000871,1.896216648,0.058861052,pos,ns,0.880576185,Fgf11,Fgf11_Exon,11,69799715,69799764,69799715,69799716,50,+,CGCCTGGAGGTAGAAACCCTGGCGGCAGAACAGTTTGGTGACGATGCCTT,"Exon (Fgf11-201/Fgf11, exon 2 of 6)",11,69796068,69801716,5649,2,Fgf11-201,1952,Chrnb1-201;Chrnb1-203;Fgf11-201;Fgf11-202;Tmem102-201,Chrnb1;Chrnb1;Fgf11;Fgf11;Tmem102,-3772;-3810;0;0;5860,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,14166,ENSMUSG00000042826,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15716,cg23366861,0.0000173,0.00000308,5.608433865,4.52E-08,gain,yes,0.00000267,0.00000523,0.510155138,0.610305812,pos,ns,0.00186168,0.001533437,1.214057089,0.225650001,pos,ns,0.646564661,0.0000941,0.0000527,1.784216796,0.075366399,pos,ns,0.069314262,Tcf20,Tcf20_Intron,15,82963749,82963798,82963797,82963798,50,-,TTTACTGGCTGCAATTCCCGGCGCCCCTCGATGGCACTTAAGAGAGACCG,"Intron (Tcf20-203/Tcf20, intron 1 of 1)",15,82857130,82987872,130743,2,Tcf20-203,24074,Tcf20-204;Tcf20-203,Tcf20;Tcf20,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,13,21411,ENSMUSG00000041852,mapped to different genes,15,82963194,82964023,830,*,830,133,0.824096386,0.949281095,0.160240964,2.63E-132,CpGisland,TRUE,NA,NRS
8562,cg00649365,-0.0000114,0.00000233,-4.873470012,0.00000175,loss,yes,0.00000202,0.00000396,0.510048755,0.610380251,pos,ns,-0.003680797,0.00116015,-3.172689903,0.001661732,neg,ns,2.779438913,0.0000638,0.0000399,1.599061007,0.110825718,pos,ns,0.946837851,Btrc,Btrc_Exon,19,45337737,45337786,45337785,45337786,50,-,TGTAACTCAAAGCCTTACCGAAACAAATTGGAATTGCCTTCTGGAGGCCG,"Exon (Gm28578-208/Gm28578-208, exon 3 of 7)",19,45363734,45507736,144003,1,Btrc-204,-25997,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,30,98,12234,ENSMUSG00000025217,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22789,cg23351593,0.000142849,0.0000128,11.13665677,1.87E-24,gain,yes,-0.0000111,0.0000218,-0.509996244,0.610416996,neg,ns,-0.013694042,0.006384078,-2.145030382,0.032727233,neg,ns,1.485090707,0.000585693,0.000219548,2.667724035,0.008038073,pos,ns,0.656257941,Dmbx1,Dmbx1_Intergenic_upstream,4,115950710,115950759,115950710,115950711,50,-,CGCTTTTGCCAAACAAAGCTGCCAGGAGGGGCTGGCTCCCGGGAGATGAT,Distal Intergenic,4,115915119,115939926,24808,2,Dmbx1-203,-10833,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,15,42,140477,ENSMUSG00000028707,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12362,cg25571113,-0.00000228,0.00000166,-1.371167889,0.171314391,loss,ns,0.00000144,0.00000282,0.509859922,0.610512393,pos,ns,0.000800882,0.000827271,0.968101307,0.333748453,pos,ns,0.476580738,-0.0000529,0.0000284,-1.860102929,0.063817904,neg,ns,0.037446204,Smad6,Smad6_Promoter,9,64022079,64022128,64022079,64022080,50,+,CGGCGCTGATTGTTGCGCAAACAAGGTTTCAAGTTTCTTAACTCTTAAAG,Promoter (<=1kb),9,63953076,64022059,68984,2,Smad6-201,-20,Smad6-201;Smad6-203,Smad6;Smad6,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,4,19,17130,ENSMUSG00000036867,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3903,cg15613269,-0.00000561,0.00000193,-2.906499172,0.003918328,loss,ns,-0.00000167,0.00000328,-0.509599421,0.610694707,neg,ns,0.000898099,0.000960306,0.9352208,0.350402453,pos,ns,0.455432863,-0.0000281,0.000033,-0.850633757,0.395629368,neg,ns,0.940996859,Celf4,Celf4_Intron,18,25712096,25712145,25712096,25712097,50,+,CGTGCACCATTAAATCTGGAGTATAAGGTGAAATTGACAACATACATTTT,"Intron (Celf4-202/Celf4, intron 1 of 12)",18,25477632,25753983,276352,2,Celf4-202,41838,Celf4-202;Celf4-201;Celf4-203;Celf4-207;Celf4-206;Celf4-209;Celf4-205,Celf4;Celf4;Celf4;Celf4;Celf4;Celf4;Celf4,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,59,108013,ENSMUSG00000024268,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5112,cg01263679,-0.0000056,0.00000562,-0.99694196,0.319570217,loss,ns,0.00000486,0.00000954,0.509559935,0.610722344,pos,ns,-0.005991113,0.002795673,-2.14299526,0.032891721,neg,ns,1.482913408,0.000248396,0.0000961,2.583607569,0.010234863,pos,ns,0.860672036,Dnm1,Dnm1_Exon,2,32334700,32334749,32334748,32334749,50,+,AACGGTGCTGATTAGCTCCGAGATAACCATGTCCACACACTTGAGACACG,"Exon (Dnm1-204/Dnm1, exon 10 of 22)",2,32308471,32353263,44793,2,Dnm1-204,18514,Dnm1-204;Dnm1-209;Dnm1-202;Dnm1-201;Dnm1-203;Dnm1-205;Dnm1-214;Dnm1-216;Dnm1-217,Dnm1;Dnm1;Dnm1;Dnm1;Dnm1;Dnm1;Dnm1;Dnm1;Dnm1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,16,13429,ENSMUSG00000026825,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23538,cg21420547,0.0000116,0.00000222,5.229425725,0.000000313,gain,yes,0.00000192,0.00000377,0.509459872,0.610792382,pos,ns,-0.000193321,0.001104897,-0.174967169,0.861219651,neg,ns,0.064886069,0.0000712,0.000038,1.874708902,0.061772913,pos,ns,0.042075401,Sp8,Sp8_Promoter,12,118840903,118840952,118840903,118840904,50,-,CGATTTTGTTCGTGTTCACTGGGCCGAAATAACGTGGCCATTATGGCCTG,Promoter (5-6kb),12,118846329,118852576,6248,1,Sp8-201,-5426,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,27,29,320145,ENSMUSG00000048562,conserved gene and region,12,118840863,118841021,159,*,159,10,0.503144654,0.999371465,0.062893082,0.00000467,CpGisland,TRUE,U13,Hc-P
23543,cg13043904,0.000124535,0.00000759,16.41790569,5.04E-44,gain,yes,0.00000656,0.0000129,0.509424711,0.610816993,pos,ns,0.012829984,0.003775298,3.3984032,0.000766358,pos,ns,3.115568196,0.00006,0.000129832,0.461821028,0.644533584,pos,ns,0.228778152,Sp8,Sp8_Promoter,12,118840935,118840984,118840983,118840984,50,+,CGTGGCCATTATGGCCTGAAATGGGCCAGGTTTGAAGCGAGCTTCCTGCG,Promoter (5-6kb),12,118846329,118852576,6248,1,Sp8-201,-5345,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,27,29,320145,ENSMUSG00000048562,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
5809,cg20224427,-0.0000171,0.00000477,-3.576980266,0.000403125,loss,ns,-0.00000413,0.00000811,-0.509369452,0.610855673,neg,ns,-0.000176033,0.002375133,-0.074115134,0.940966574,neg,ns,0.026425804,-0.000126719,0.0000817,-1.551394265,0.121827506,neg,ns,0.892936318,Reep2,Reep2_Exon,18,34842451,34842500,34842499,34842500,50,+,TAGGCTCATCTTTGGCACCCTGTACCCAGCCTATTCTTCCTACAAGGCCG,"Exon (Reep2-201/Reep2, exon 2 of 8)",18,34840589,34847463,6875,1,Reep2-201,1862,Kdm3b-201;Kdm3b-206;Kdm3b-202;Reep2-201,Kdm3b;Kdm3b;Kdm3b;Reep2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,225362,ENSMUSG00000038555,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7288,cg15656338,0.00000338,0.00000347,0.974191803,0.330720867,gain,ns,-0.000003,0.00000589,-0.509205489,0.610970451,neg,ns,-0.001477771,0.001727009,-0.855682047,0.392834552,neg,ns,0.405790321,0.0000403,0.0000594,0.678932065,0.497687462,pos,ns,0.890949286,Morn4,Morn4_Exon,19,42076479,42076528,42076527,42076528,50,+,TAAATTCCCCCTCAAAGGTCATGTTGTCATATCGAATGAAGACTCCGACG,"Exon (Morn4-202/Morn4, exon 3 of 4)",19,42074939,42079133,4195,2,Morn4-202,2605,Morn4-202;Morn4-201,Morn4;Morn4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,226123,ENSMUSG00000049670,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3712,cg06412376,-0.0000072,0.0000043,-1.674668522,0.095007752,loss,ns,-0.00000372,0.00000731,-0.509178054,0.610989657,neg,ns,0.000767954,0.002140429,0.358785157,0.720000044,pos,ns,0.142667477,-0.0000107,0.0000736,-0.14599258,0.884022132,neg,ns,0.913774729,Adgrb3,Adgrb3_Exon,1,25112205,25112254,25112253,25112254,50,-,AAGCTGTTGTTGAAACTACTCCACACTTGGCACATTTGAGCGTCAAACCG,"Exon (Adgrb3-203/Adgrb3, exon 9 of 16)",1,25067476,25228826,161351,2,Adgrb3-203,116572,Adgrb3-203;Adgrb3-206;Adgrb3-205;Adgrb3-207;Adgrb3-201;Adgrb3-208;Adgrb3-202,Adgrb3;Adgrb3;Adgrb3;Adgrb3;Adgrb3;Adgrb3;Adgrb3,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,25,210933,ENSMUSG00000033569,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25235,cg22029297,0.00000902,0.00000488,1.848607992,0.065466551,gain,ns,-0.00000422,0.00000829,-0.50908312,0.611056118,neg,ns,0.00179039,0.002427945,0.737409683,0.461431019,pos,ns,0.335893214,0.0000432,0.0000835,0.517499648,0.605176483,pos,ns,0.101791181,Lin28a,Lin28a_Promoter,4,134019340,134019389,134019340,134019341,50,-,CGCTGGCCAATCAGAAACACAAACCACCTGTCAAGGGAGAAATGAATGGG,Promoter (<=1kb),4,134003330,134018841,15512,2,Lin28a-201,-548,Lin28a-201;Lin28a-204,Lin28a;Lin28a,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,3,5,83557,ENSMUSG00000050966,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
12506,cg20376754,-0.00000583,0.00000264,-2.207735799,0.027994712,loss,ns,-0.00000228,0.00000448,-0.509050758,0.611078774,neg,ns,-0.00081546,0.001313277,-0.62093537,0.535098418,neg,ns,0.271566333,-0.0000464,0.0000452,-1.028179277,0.30466707,neg,ns,0.95661031,Atoh1,Atoh1_Intergenic_downstream,6,64754707,64754756,64754755,64754756,50,+,ACTTTATTGTAACTGACTTCATGACATTTGCTCTTGCTTAATAATAATCG,Distal Intergenic,6,64729125,64731245,2121,1,Atoh1-201,25582,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,11921,ENSMUSG00000073043,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9400,cg02991558,0.0000179,0.0000049,3.654141065,0.000302932,gain,ns,-0.00000424,0.00000833,-0.508907924,0.611178776,neg,ns,0.002300769,0.002440297,0.942823224,0.346505505,pos,ns,0.460289861,-0.000116936,0.0000839,-1.393389937,0.164500125,neg,ns,0.090684027,Nnmt,Nnmt_Intergenic_upstream,9,48649630,48649679,48649630,48649631,50,+,CGATTAAATGTTGTTTTAAAGAGGGAGTGCTCACTGCCCTCCCATCTGTC,Distal Intergenic,9,48591877,48605153,13277,2,Nnmt-202,-44477,Zbtb16-201,Zbtb16,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,18113,ENSMUSG00000032271,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22105,cg20821026,-0.00000226,0.000000933,-2.425551727,0.015855832,loss,ns,-0.000000807,0.00000159,-0.508829529,0.611233666,neg,ns,0.00022312,0.000464369,0.480481346,0.631224055,pos,ns,0.199816459,-0.00000453,0.000016,-0.28369616,0.776832615,neg,ns,0.027183752,Zdhhc17,Zdhhc17_fiveUTR,10,111009995,111010044,111010043,111010044,50,+,CGCCATCTTGGTGTTAAATCCCTCCTCCCGCTGCATGCTGGGAGAAAGCG,Promoter (<=1kb),10,110942581,111009995,67415,2,Zdhhc17-210,0,Zdhhc17-201;Zdhhc17-203;Zdhhc17-210;Zdhhc17-202;Zdhhc17-209;Zdhhc17-204;Zdhhc17-208,Zdhhc17;Zdhhc17;Zdhhc17;Zdhhc17;Zdhhc17;Zdhhc17;Zdhhc17,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,4,320150,ENSMUSG00000035798,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
16129,cg13113575,-0.0000217,0.00000544,-3.987595215,0.0000833,loss,ns,-0.0000047,0.00000924,-0.508552991,0.611427307,neg,ns,-0.000717972,0.002707187,-0.265209481,0.791024358,neg,ns,0.101810143,-0.0000308,0.0000931,-0.331358883,0.740597305,neg,ns,0.892608206,Aatf,Aatf_Intron,11,84481605,84481654,84481653,84481654,50,+,CCTGCCACTTGCACTAGTCATCCCCAGCAATTAATCCCCCAAGAAAGACG,"Intron (Aatf-201/Aatf, intron 5 of 12)",11,84422855,84513522,90668,2,Aatf-201,31868,Aatf-201;Aatf-202;Aatf-204,Aatf;Aatf;Aatf,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,10,56321,ENSMUSG00000018697,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
995,cg27594957,-0.0000329,0.0000084,-3.920696982,0.000108725,loss,ns,0.00000726,0.0000143,0.508544604,0.61143318,pos,ns,0.001995897,0.004182154,0.477241328,0.633526564,pos,ns,0.19823517,-0.0000828,0.000143824,-0.57545235,0.565402865,neg,ns,0.725105994,Syt7,Syt7_threeUTR,19,10430345,10430394,10430345,10430346,50,+,CGGATGGTGGTGCTATCCTTGGTCTTAGGGCTTTCGGAACAGGATGACTT,3' UTR,19,10389090,10448444,59355,1,Syt7-201,41255,Syt7-201;Syt7-208;Syt7-203;Syt7-202;Syt7-210;Syt7-211;Syt7-204;Syt7-205;Syt7-207;Syt7-209;Syt7-213;Syt7-214;Syt7-215;Syt7-212,Syt7;Syt7;Syt7;Syt7;Syt7;Syt7;Syt7;Syt7;Syt7;Syt7;Syt7;Syt7;Syt7;Syt7,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,9,10,54525,ENSMUSG00000024743,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7578,cg22455501,0.0000608,0.000014,4.348373457,0.0000186,gain,ns,-0.0000121,0.0000238,-0.508522873,0.611448397,neg,ns,0.020399888,0.006958455,2.931669294,0.003622309,pos,ns,2.441014561,-0.000485799,0.000239301,-2.030078002,0.043202209,neg,ns,0.503720707,Zbtb20,Zbtb20_Intron,16,43298106,43298155,43298154,43298155,50,-,TAGTGTAAATCAATAGTAAACGCTAACCGCCTACTCTGTACTCAGTTACG,"Intron (Zbtb20-209/Zbtb20, intron 6 of 7)",16,42875881,43463175,587295,1,Zbtb20-209,422225,Zbtb20-209;Zbtb20-211;Zbtb20-217;Zbtb20-218;Zbtb20-204;Zbtb20-215;Zbtb20-212;Zbtb20-201;Zbtb20-203,Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,98,56490,ENSMUSG00000022708,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1259,cg27035369,0.000101756,0.000016,6.36076064,7.19E-10,gain,yes,0.0000138,0.0000272,0.508444178,0.611503508,pos,ns,0.032808331,0.007962117,4.120553821,0.0000486,pos,ns,4.313781347,-0.001036588,0.000273817,-3.785703564,0.000184016,neg,ns,0.218228878,Bcor,Bcor_Exon,X,12136931,12136980,12136979,12136980,50,-,TGCAATCAGTTTCCGAAAGGTCAGCCAAGGTCCTCCGGCTCTCGCAGACG,"Exon (Bcor-208/Bcor, exon 3 of 5)",20,12036743,12160355,123613,2,Bcor-201,23375,Bcor-201;Bcor-208,Bcor;Bcor,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,74,71458,ENSMUSG00000040363,conserved gene but different region,X,12136836,12137187,352,*,352,27,0.613636364,0.817337461,0.076704546,1.07E-17,CpGisland,TRUE,NA,NRS
16967,cg14854610,0.00000242,0.0000125,0.194146408,0.846188404,gain,ns,-0.0000108,0.0000212,-0.508399323,0.611534921,neg,ns,-0.00471207,0.006211952,-0.758549069,0.448698669,neg,ns,0.348045219,0.000059,0.000213629,0.276242785,0.78254567,pos,ns,0.781478418,Zfp423,Zfp423_Intron,8,87719373,87719422,87719421,87719422,50,+,AGCTTGCCACAGTATGAAGTCCAGTTTGGGCTATATTCCCTTCCCTCTCG,"Intron (Zfp423-203/Zfp423, intron 3 of 5)",8,87661810,87804439,142630,2,Zfp423-203,85017,Zfp423-203;Zfp423-202;Zfp423-201,Zfp423;Zfp423;Zfp423,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,42,53,94187,ENSMUSG00000045333,conserved gene and region,8,87719421,87719598,178,*,178,12,0.550561798,0.920689655,0.06741573,0.000000167,CpGisland,TRUE,U15,NS
27019,cg20243605,-0.00000569,0.00000168,-3.376623487,0.000827316,loss,ns,0.00000145,0.00000286,0.508298732,0.611605371,pos,ns,0.0000861,0.000838251,0.102734787,0.918239888,pos,ns,0.037043846,0.0000123,0.0000288,0.425693142,0.670626846,pos,ns,0.046654423,Rbm39,Rbm39_Exon,2,156178941,156178990,156178941,156178942,50,-,CGTTAGGCAAGTCTACAAAGAGAGATAGATGGGCATTTATTCATCACGCT,"Exon (Rbm39-225/Rbm39, exon 3 of 18)",2,156147239,156180238,33000,2,Rbm39-203,1248,Rbm39-203;Rbm39-217;Rbm39-215;Rbm39-201;Rbm39-225;Rbm39-223;Rbm39-204;Rbm39-216;Rbm39-213;Rbm39-214;Rbm39-218;Rbm39-219;Rbm39-210;Rbm39-224;Rbm39-212;Rbm39-202;Rbm39-208;Rbm39-222;Rbm39-205;Rbm39-211,Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,13,170791,ENSMUSG00000027620,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
21604,cg02506421,-0.00000224,0.00000662,-0.338853416,0.734949568,loss,ns,0.00000572,0.0000113,0.508289324,0.61161196,pos,ns,-0.002062251,0.003295926,-0.625696949,0.531974104,neg,ns,0.274109508,0.0000761,0.000113347,0.671427085,0.502448504,pos,ns,0.839088033,Usp19,Usp19_Exon,9,108501829,108501878,108501877,108501878,50,-,TTCTGTTGCAGGGACTAGGCCCTGGCCAGGCCCCCGAGGTGGCCCCCACG,"Exon (Usp19-203/Usp19, exon 26 of 26)",9,108490840,108502337,11498,1,Usp19-203,10989,Usp19-201;Usp19-203;Usp19-202;Usp19-210;Usp19-204;Usp19-212;Usp19-216;Usp19-213;Usp19-215;Usp19-209;Usp19-211,Usp19;Usp19;Usp19;Usp19;Usp19;Usp19;Usp19;Usp19;Usp19;Usp19;Usp19,0;0;0;0;0;0;5482;4840;4740;3126;1679,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,Exon,3,3,71472,ENSMUSG00000006676,conserved gene and region,9,108501783,108501951,169,*,169,11,0.698224852,0.544044484,0.065088757,0.000000917,CpGisland,TRUE,U10,Tr-S
12487,cg08359777,-0.00000334,0.00000489,-0.682865928,0.495201553,loss,ns,0.00000422,0.0000083,0.508197933,0.611675969,pos,ns,0.002260363,0.002431428,0.929644251,0.353278639,pos,ns,0.451882622,-0.000220054,0.0000836,-2.631703267,0.008920823,neg,ns,0.906637964,Creb1,Creb1_threeUTR,1,64597484,64597533,64597484,64597485,50,-,CGCAAAACTGCCTGAAAGCAACTACAGAATTTCATTCATTTGTGCTTTTG,3' UTR,1,64532645,64597695,65051,1,Creb1-204,64839,Creb1-204;Creb1-203;Creb1-201;Creb1-202;Creb1-210;Creb1-209,Creb1;Creb1;Creb1;Creb1;Creb1;Creb1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,threeUTR,3,4,12912,ENSMUSG00000025958,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3469,cg03765899,-0.00000317,0.00000288,-1.101011012,0.271746023,loss,ns,-0.00000248,0.00000489,-0.508125264,0.611726868,neg,ns,0.000970174,0.001431276,0.677838489,0.498379704,pos,ns,0.302439652,-0.0000413,0.0000492,-0.838525017,0.402381993,neg,ns,0.9355082,Bcl11a,Bcl11a_Exon,11,24163366,24163415,24163414,24163415,50,+,CCCCTTTAACCTGCTAAGAATACCAGGATCAGTATCGAGAGAGGCTTCCG,"Exon (Bcl11a-201/Bcl11a, exon 4 of 5)",11,24078056,24173194,95139,1,Bcl11a-201,85310,Bcl11a-201;Bcl11a-203;Bcl11a-202;Bcl11a-204;Bcl11a-206,Bcl11a;Bcl11a;Bcl11a;Bcl11a;Bcl11a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,51,98,14025,ENSMUSG00000000861,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16082,cg08562853,-0.00000361,0.00000406,-0.889528116,0.374409076,loss,ns,0.0000035,0.00000689,0.508008387,0.611808735,pos,ns,0.002096687,0.00201929,1.038328608,0.299926291,pos,ns,0.522985463,-0.0000962,0.0000694,-1.385827929,0.166795565,neg,ns,0.924518117,Bnc2,Bnc2_Intron,4,84367222,84367271,84367222,84367223,50,-,CGAATAGTTAACAGCTGTACCTACTGCTAAGCATTACACGGATGCCACAA,"Intron (Bnc2-201/Bnc2, intron 6 of 7)",4,84275095,84675034,399940,2,Bnc2-201,307763,Bnc2-201;Bnc2-202;Bnc2-214;Bnc2-215;Bnc2-206;Bnc2-211;Bnc2-205;Bnc2-217;Bnc2-207;Bnc2-212,Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,91,242509,ENSMUSG00000028487,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18451,cg19362725,0.00000492,0.0000121,0.405198088,0.685611392,gain,ns,-0.0000105,0.0000206,-0.507954904,0.611846199,neg,ns,-0.004225763,0.006042573,-0.699331726,0.48486913,neg,ns,0.314375465,-0.000113653,0.000207804,-0.546924111,0.584824343,neg,ns,0.872260532,Cnot1,Cnot1_threeUTR,8,95770605,95770654,95770653,95770654,50,-,TTAGCTACCCCTCCGGAATCAGGCAGGATCCTGTCCATTAGAATGTCCCG,3' UTR,8,95719451,95807462,88012,2,Cnot1-202,36808,Cnot1-202;Cnot1-201;Cnot1-203;Cnot1-216;Cnot1-217;Cnot1-207;Cnot1-214;Cnot1-209,Cnot1;Cnot1;Cnot1;Cnot1;Cnot1;Cnot1;Cnot1;Cnot1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,8,24,234594,ENSMUSG00000036550,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6150,cg15257614,0.0000151,0.0000176,0.859897212,0.390510203,gain,ns,0.0000152,0.0000299,0.507858219,0.611913928,pos,ns,-0.000456146,0.008753052,-0.052112754,0.958472414,neg,ns,0.018420382,0.000218945,0.000301017,0.727351092,0.467559851,pos,ns,0.826320282,Tenm2,Tenm2_Intron,11,36152899,36152948,36152899,36152900,50,+,CGAAGATCGCAAGAGACTTTTAAGCCTATGATTAATTCAATTCATTTAAA,"Intron (Tenm2-202/Tenm2, intron 11 of 30)",11,36006656,37235882,1229227,2,Tenm2-202,1082934,Tenm2-202;Tenm2-208;Tenm2-201;Tenm2-204;Tenm2-205,Tenm2;Tenm2;Tenm2;Tenm2;Tenm2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,47,84,23964,ENSMUSG00000049336,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19925,cg08092444,0.0000108,0.00000516,2.102924512,0.036278255,gain,ns,-0.00000445,0.00000876,-0.507852145,0.611918183,neg,ns,-0.005616868,0.002566442,-2.188581161,0.029373157,neg,ns,1.53204937,0.000201118,0.0000883,2.278707288,0.023364335,pos,ns,0.848932662,Ogt,Ogt_Exon,X,101654454,101654503,101654454,101654455,50,-,CGTGCGAATGAACCCCTGTGAACGGTTGACTAGATGAGTAATCTGATTGA,"Exon (Ogt-204/Ogt, exon 4 of 4)",20,101640060,101682940,42881,1,Ogt-202,14394,Ogt-202;Ogt-206;Ogt-201;Ogt-205;Ogt-204;Ogt-207;Ogt-203,Ogt;Ogt;Ogt;Ogt;Ogt;Ogt;Ogt,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,Exon,32,33,108155,ENSMUSG00000034160,conserved gene and region,X,101654404,101654477,74,*,74,8,0.608108108,1.174603175,0.108108108,0.0000012,CpGisland,TRUE,U10,Tr-S
21242,cg15022476,0.0000146,0.00000825,1.775172877,0.076850483,gain,ns,0.00000712,0.000014,0.507851272,0.611918794,pos,ns,-0.001441962,0.004104933,-0.351275479,0.725620311,neg,ns,0.13929057,0.0000438,0.000141168,0.310073549,0.756713372,pos,ns,0.752359711,Gm13902,Gm13902_Promoter,2,106931558,106931607,106931558,106931559,50,-,CGACAGGCGCTGTTCTTCAGTTCCCATCAGCGACAACTAAAGGCCAATTC,Promoter (4-5kb),2,106926565,106927169,605,2,Gm13902-201,-4438,Gm13902-201,Gm13902,-4389,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,3,677260,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13079,cg17056827,0.000000545,0.000000459,1.18673696,0.236240041,gain,ns,-0.000000396,0.00000078,-0.50770068,0.612024293,neg,ns,0.000523901,0.000228558,2.292199345,0.022563988,pos,ns,1.646584145,-0.000021,0.00000786,-2.669182037,0.008004058,neg,ns,0.010092474,Arf6,Arf6_Exon,12,69372968,69373017,69373016,69373017,50,-,TTCAACGTATGGGATGTGGGCGGCCAGGACAAGATCCGGCCGCTCTGGCG,Promoter (<=1kb),12,69372150,69373783,1634,1,Arf6-201,818,Arf6-201;Gm18113-201,Arf6;Gm18113,0;-2945,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,8,11845,ENSMUSG00000044147,conserved gene and region,12,69371680,69373175,1496,*,1496,186,0.703877005,1.010385046,0.124331551,4.87E-160,CpGisland,TRUE,NA,NRS
19653,cg09438955,0.00000884,0.00000229,3.863509433,0.000136122,gain,ns,-0.00000197,0.00000389,-0.507578847,0.61210965,neg,ns,0.00269019,0.001139168,2.361540165,0.018817384,pos,ns,1.725440764,-0.0000852,0.0000392,-2.174873978,0.030395249,neg,ns,0.074690802,Klf12,Klf12_fiveUTR,14,100284484,100284533,100284532,100284533,50,-,TGAATGGGGGGCAACCCGGGGAACTGTTGTACTTGCAAATGACTTACCCG,Promoter (<=1kb),14,100022832,100284484,261653,2,Klf12-204,0,Klf12-205;Klf12-204;Klf12-203,Klf12;Klf12;Klf12,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,6,11,16597,ENSMUSG00000072294,mapped to different genes,14,100284532,100284652,121,*,121,13,0.685950413,0.929669031,0.107438017,1.21E-10,CpGisland,TRUE,U1,Pr-A
10238,cg14503550,0.0000197,0.00000249,7.896793684,5.00E-14,gain,yes,-0.00000215,0.00000424,-0.507572792,0.612113893,neg,ns,0.001658062,0.001240998,1.336071408,0.182505875,pos,ns,0.73872315,0.0000648,0.0000427,1.518512266,0.129904471,pos,ns,0.055703188,Hoxa13,Hoxa13_Exon,6,52259879,52259928,52259927,52259928,50,+,TCCAGAGGTGGGGAGGCTGCGCCTGCTCTTTGGGGCAGTACATTTGGCCG,Promoter (<=1kb),6,52257694,52260803,3110,2,Hoxa13-203,875,Hoxa13-203;Hoxa13-201;Hoxa13-202;Hoxa13-204;Hoxa13-205;Hoxa13-206,Hoxa13;Hoxa13;Hoxa13;Hoxa13;Hoxa13;Hoxa13,0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,12,15398,ENSMUSG00000038203,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21579,cg02088852,0.0000751,0.000012,6.2575393,1.30E-09,gain,yes,-0.0000103,0.0000204,-0.507441476,0.6122059,neg,ns,0.024945814,0.005972986,4.176439671,0.0000385,pos,ns,4.414179788,-0.000575013,0.00020541,-2.799334235,0.005441853,neg,ns,0.339640373,Zfhx3,Zfhx3_Intron,8,108436440,108436489,108436440,108436441,50,+,CGGCCTGTTGAAAATCAATTCTGTTGGACCAGTGTGTTTGTTCGGAAAGC,"Intron (Zfhx3-204/Zfhx3, intron 3 of 15)",8,107942644,108961630,1018987,1,Zfhx3-204,493796,Zfhx3-204,Zfhx3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,114,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13275,cg15869190,-0.00000368,0.00000742,-0.495842383,0.620356959,loss,ns,-0.00000639,0.0000126,-0.507354978,0.612266508,neg,ns,0.005446718,0.003690793,1.475758266,0.141023773,pos,ns,0.85070767,-0.000302102,0.000126926,-2.380137774,0.017910506,neg,ns,0.605423439,Ank3,Ank3_Exon,10,69988722,69988771,69988722,69988723,50,-,CGGGGAGATATTAACCTAAAAGATTTTCTGCCAGAAAAACACGATGCTTT,"Exon (Ank3-244/Ank3, exon 6 of 9)",10,69398996,70023957,624962,1,Ank3-247,589726,Ank3-247;Ank3-231;Ank3-210;Ank3-239;Ank3-240;Ank3-220;Ank3-201;Ank3-202;Ank3-203;Ank3-204;Ank3-206;Ank3-233;Ank3-221;Ank3-232;Ank3-228;Ank3-205;Ank3-215;Ank3-237;Ank3-242;Ank3-208;Ank3-227;Ank3-207;Ank3-230;Ank3-219;Ank3-244;Ank3-238;Ank3-213;Ank3-224;Ank3-236;Ank3-225;Ank3-243,Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,13,11735,ENSMUSG00000069601,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U14,Hc-H
9002,cg02391262,-0.000000842,0.000000436,-1.930318776,0.054479315,loss,ns,0.000000376,0.000000741,0.507175146,0.612392524,pos,ns,0.000132392,0.00021707,0.609905762,0.542371035,pos,ns,0.265703511,-0.0000113,0.00000747,-1.509637331,0.132154538,neg,ns,0.010833498,Trim8,Trim8_Exon,19,46502864,46502913,46502864,46502865,50,+,CGGGCCTGGAGCTGCCCGCAGCACAACGCCTACCGCCTCTACCACTGCGA,"Exon (Trim8-201/Trim8, exon 1 of 6)",19,46501702,46516848,15147,1,Trim8-201,1162,Trim8-201,Trim8,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,15,21,93679,ENSMUSG00000025034,conserved gene and region,19,46502503,46503142,640,*,640,53,0.6359375,0.821705426,0.0828125,6.38E-36,CpGisland,TRUE,U1,Pr-A
12275,cg26104512,-0.00000843,0.00000248,-3.401450582,0.000758171,loss,ns,-0.00000213,0.00000421,-0.507009758,0.612508427,neg,ns,-0.002929252,0.001233009,-2.375694391,0.018123608,neg,ns,1.741755333,0.0000605,0.0000424,1.426098367,0.154846183,pos,ns,0.941498753,Wdr7,Wdr7_threeUTR,18,63777619,63777668,63777667,63777668,50,-,ATGTGGAAGCGTTGATTATTCAACTCCTGACTGAAGAAGCCTCTAGGCCG,3' UTR,18,63708685,63989776,281092,1,Wdr7-201,68934,Wdr7-201;Wdr7-205;Wdr7-204;Wdr7-202,Wdr7;Wdr7;Wdr7;Wdr7,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,11,104082,ENSMUSG00000040560,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22495,cg20553183,0.00000309,0.00000216,1.429326223,0.153917419,gain,ns,0.00000186,0.00000367,0.506968608,0.612537267,pos,ns,-0.000762574,0.001075773,-0.708861361,0.478943246,neg,ns,0.319715947,0.0000418,0.000037,1.130655292,0.259074192,pos,ns,0.95626471,Wwox,Wwox_Intron,8,114859034,114859083,114859034,114859035,50,+,CGCTTGATATACCTTCCAAATGGAGTACTTTGTGCGTTAATTCAGTTTGT,"Intron (Wwox-201/Wwox, intron 8 of 8)",8,114439655,115352708,913054,1,Wwox-201,419379,Wwox-201;Wwox-203;Wwox-204;Wwox-209,Wwox;Wwox;Wwox;Wwox,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,32,32,80707,ENSMUSG00000004637,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13330,cg10583293,0.0000176,0.00000985,1.790997229,0.074269234,gain,ns,-0.00000848,0.0000167,-0.506926267,0.612566942,neg,ns,-0.004963738,0.004903597,-1.01226472,0.31220092,neg,ns,0.505565821,0.000316209,0.000168634,1.875114493,0.061716913,pos,ns,0.776608244,Nr2f2,Nr2f2_Intergenic_downstream,7,70123058,70123107,70123058,70123059,50,+,CGTCAGATTAAGCCCTTGCACAGAGAAGATATGAAAAGCATTTCTAATTA,Distal Intergenic,7,70353074,70355237,2164,2,Nr2f2-203,232130,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,19,69,11819,ENSMUSG00000030551,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20053,cg07937786,0.0000838,0.0000115,7.263731283,3.07E-12,gain,yes,-0.00000994,0.0000196,-0.506899377,0.612585788,neg,ns,0.015326652,0.005742168,2.669140196,0.008005032,pos,ns,2.096636923,-0.000385741,0.000197473,-1.953389282,0.051672785,neg,ns,0.488249541,Sp7,Sp7_fiveUTR,15,102366385,102366434,102366433,102366434,50,-,GCTGCTCTCTGTCTGTAGGGATCCACCCTCTAATTACAGCTTTCCCAGCG,Promoter (<=1kb),15,102356606,102366513,9908,2,Sp7-201,79,Sp7-201;Sp7-202;Sp7-203,Sp7;Sp7;Sp7,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,10,170574,ENSMUSG00000060284,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
22479,cg01527913,-0.00000163,0.00000568,-0.287604359,0.773841776,loss,ns,-0.00000489,0.00000965,-0.506829246,0.612634942,neg,ns,0.004705359,0.002828361,1.663634407,0.097196039,pos,ns,1.012351435,-0.000220705,0.0000973,-2.269060866,0.023951636,neg,ns,0.933546206,Gm12830,Gm12830_Intergenic_upstream,4,114795960,114796009,114796008,114796009,50,+,ACACGGCTGATAATTTATTTTTCCGTCAGAAGATTACTTTTCTCTTTACG,Distal Intergenic,4,114821722,114856166,34445,1,Gm12830-201,-25713,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,12,26,433746,ENSMUSG00000055198,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7868,cg15136704,-0.0000197,0.0000107,-1.842955305,0.066290134,loss,ns,0.0000092,0.0000182,0.506804797,0.612652078,pos,ns,0.001232299,0.005320149,0.231628631,0.816979286,pos,ns,0.087788955,-0.000119307,0.000182959,-0.652092651,0.514824599,neg,ns,0.804852986,Gtdc1,Gtdc1_Intron,2,44575742,44575791,44575790,44575791,50,+,CAGAACCAAATGTTAAGGTGCCAAAAAAAGCTGACAAAAGCAAAGGCCCG,"Intron (Gtdc1-203/Gtdc1, intron 7 of 10)",2,44564412,44861622,297211,2,Gtdc1-203,285831,Gtdc1-203;Gtdc1-201;Gtdc1-207;Gtdc1-208;Gtdc1-205,Gtdc1;Gtdc1;Gtdc1;Gtdc1;Gtdc1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,43,227835,ENSMUSG00000036890,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27632,cg13944966,0.0000745,0.0000182,4.100585823,0.0000527,gain,ns,0.0000156,0.0000309,0.506578411,0.612810762,pos,ns,0.027037921,0.009042176,2.9902008,0.0030113,pos,ns,2.521245983,-0.000874457,0.00031096,-2.812124336,0.005235328,neg,ns,0.277320552,Aim2,Aim2_Intron,1,173390352,173390401,173390352,173390353,50,+,CGCGCTGGACTTCTAATCCAGAGGTTCCGGGTTCGAGTCCCGGCAGAGAT,"Intron (Aim2-202/Aim2, intron 1 of 11)",1,173350879,173466040,115162,1,Aim2-202,39473,Aim2-202,Aim2,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,7,383619,ENSMUSG00000037860,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13145,cg10903296,-0.00000823,0.0000119,-0.694422382,0.487937451,loss,ns,-0.0000102,0.0000201,-0.506512527,0.612856947,neg,ns,0.009892882,0.005898872,1.677080364,0.094534758,pos,ns,1.024408485,-0.000270079,0.000202862,-1.33134685,0.184053108,neg,ns,0.639800181,Efnb3,Efnb3_Intron,11,69557779,69557828,69557779,69557780,50,+,CGTTGCCATGGCAACAGGATGCCAGTTACCAAGGAGCTGGCCTCTCTGGA,"Intron (Efnb3-201/Efnb3, intron 1 of 4)",11,69554092,69560205,6114,2,Efnb3-201,2377,Efnb3-201;Wrap53-203;Wrap53-201,Efnb3;Wrap53;Wrap53,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,6,13643,ENSMUSG00000003934,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9467,cg25184738,-0.0000039,0.00000126,-3.099874854,0.002113692,loss,ns,0.00000108,0.00000214,0.506375753,0.61295283,pos,ns,0.000782424,0.000626173,1.249534479,0.21241223,pos,ns,0.672820481,-0.0000285,0.0000215,-1.324109826,0.186442035,neg,ns,0.047473504,Acvr2a,Acvr2a_fiveUTR,2,48814659,48814708,48814659,48814660,50,+,CGAATATGTTTTATGACGGTTGATTTTACACCAGGAGGTTTGTCTCCGAG,Promoter (<=1kb),2,48814109,48903269,89161,1,Acvr2a-201,550,Acvr2a-201;Gm13489-201,Acvr2a;Gm13489,0;-4104,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,7,10,11480,ENSMUSG00000052155,conserved gene and region,2,48814621,48814980,360,*,360,29,0.588888889,0.929901131,0.080555556,1.40E-19,CpGisland,TRUE,U1,Pr-A
6120,cg03363289,0.0000149,0.00000876,1.699635898,0.090202532,gain,ns,0.00000754,0.0000149,0.506253864,0.613038283,pos,ns,-0.006483464,0.004360815,-1.486754952,0.138095891,neg,ns,0.859819244,0.000323604,0.000149968,2.157820311,0.031709614,pos,ns,0.41994994,Lhx6,Lhx6_Promoter,2,36104367,36104416,36104367,36104368,50,+,CGCCCAAAGAATTGCAAATTTGATTTTTTAATGGTAGTAATTAAAAATCG,Promoter (<=1kb),2,36081953,36105271,23319,2,Lhx6-201,855,Lhx6-202;Lhx6-204;Lhx6-201;Lhx6-205;Lhx6-203;Lhx6-208;Lhx6-209;Lhx6-207,Lhx6;Lhx6;Lhx6;Lhx6;Lhx6;Lhx6;Lhx6;Lhx6,0;0;0;0;0;0;-775;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,3,9,16874,ENSMUSG00000026890,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
10877,cg26924388,-0.00000225,0.00000399,-0.564492663,0.5728271,loss,ns,0.00000343,0.00000677,0.506220465,0.6130617,pos,ns,0.00505508,0.001983634,2.548393589,0.011304064,pos,ns,1.946765383,-0.000250981,0.0000682,-3.679152835,0.000275843,neg,ns,0.887856228,Ralgapa1,Ralgapa1_Intron,12,55721273,55721322,55721273,55721274,50,-,CGCATGCATAACCAAACAGAGAGAAAGCAGTGACCATCCCAAAGCTTTTT,"Intron (Ralgapa1-211/Ralgapa1, intron 17 of 39)",12,55602896,55820767,217872,2,Ralgapa1-211,99445,Ralgapa1-211;Ralgapa1-212;Ralgapa1-201;Ralgapa1-202;Ralgapa1-204;Ralgapa1-207;Ralgapa1-208,Ralgapa1;Ralgapa1;Ralgapa1;Ralgapa1;Ralgapa1;Ralgapa1;Ralgapa1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,15,56784,ENSMUSG00000021027,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1778,cg18871253,-0.0000309,0.000015,-2.055069895,0.040709901,loss,ns,0.0000129,0.0000255,0.506122162,0.613130623,pos,ns,-0.000752647,0.007485172,-0.100551741,0.919971306,neg,ns,0.036225718,0.00016196,0.000257414,0.62918086,0.52969403,pos,ns,0.213820525,Foxp2,Foxp2_fiveUTR,6,15185485,15185534,15185533,15185534,50,+,ACATACCCTAGTGATTAAATGCTGATTTTGTGTACGATTGTCCACGGACG,Promoter (<=1kb),6,15185506,15438023,252518,1,Foxp2-205,0,Foxp2-207;Foxp2-213;Foxp2-208;Foxp2-211;Foxp2-217;Foxp2-203;Foxp2-216;Foxp2-205;Foxp2-204;Foxp2-201;Foxp2-210,Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,65,114142,ENSMUSG00000029563,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21111,cg07751902,0.0000416,0.00000593,7.020895601,1.40E-11,gain,yes,-0.0000051,0.0000101,-0.506104615,0.613142926,neg,ns,0.007374437,0.002950139,2.499690975,0.012946818,pos,ns,1.88783697,-0.000166149,0.000101455,-1.637665911,0.10250602,neg,ns,0.109942924,Ppfia2,Ppfia2_Promoter,10,106469421,106469470,106469421,106469422,50,-,CGTGAGGAGGAGAGCAAAGACGTGATTACTTCAGAATTTATTTAAGGGCC,Promoter (<=1kb),10,106470339,106932492,462154,1,Ppfia2-201,-918,Ppfia2-201;Ppfia2-202;Ppfia2-203,Ppfia2;Ppfia2;Ppfia2,0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,9,327814,ENSMUSG00000053825,conserved gene but different region,10,106469372,106469489,118,*,118,9,0.525423729,1.299877601,0.076271186,0.00000366,CpGisland,TRUE,U13,Hc-P
23428,cg22272965,0.0000614,0.00000853,7.193814171,4.76E-12,gain,yes,-0.00000734,0.0000145,-0.506097974,0.613147582,neg,ns,0.012509213,0.004246368,2.945861551,0.003464551,pos,ns,2.460353079,-0.00036203,0.000146032,-2.479111582,0.013702518,neg,ns,0.557046041,Gm5672,Gm5672_Intergenic_upstream,14,118416363,118416412,118416411,118416412,50,-,TAGCATAAACACCATTTAATACTATTCACAGGCTATTGAAGAGATGGGCG,Distal Intergenic,14,118375261,118376194,934,2,Gm5672-201,-40218,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,9,435422,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19535,cg04603718,-0.0000029,0.00000518,-0.560649738,0.575441312,loss,ns,-0.00000445,0.00000879,-0.506084671,0.61315691,neg,ns,-0.003423888,0.002576315,-1.328986305,0.184829803,neg,ns,0.733227999,0.000019,0.0000886,0.214526458,0.830277584,pos,ns,0.705635473,Krtap1-4,Krtap1-4_Exon,11,99583114,99583163,99583162,99583163,50,+,TGGCAGCAGCAGGCTGGGCGGCAGCAGGACTGTCCACAGTAGGACGGGCG,Promoter (<=1kb),11,99583062,99583654,593,2,Krtap1-4-201,491,Krtap1-4-201;Krtap1-5-201,Krtap1-4;Krtap1-5,0;-2098,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,629873,ENSMUSG00000075567,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8617,cg17656607,0.000012,0.00000996,1.20678366,0.228435537,gain,ns,0.00000855,0.0000169,0.505704179,0.613423721,pos,ns,0.003013323,0.004955185,0.608115114,0.543556394,pos,ns,0.264755391,-0.000431609,0.000170408,-2.532791565,0.011808854,neg,ns,0.749083082,Dscaml1,Dscaml1_Exon,9,45450481,45450530,45450529,45450530,50,+,GTTTTCAGGGAACCCTACACCGTCCGGGTGGAGGATCAAAGGTCAATGCG,"Exon (Dscaml1-208/Dscaml1, exon 5 of 6)",9,45426628,45571224,144597,1,Dscaml1-208,23853,Dscaml1-208;Dscaml1-209;Dscaml1-202;Dscaml1-206;Dscaml1-211;Dscaml1-201;Dscaml1-210,Dscaml1;Dscaml1;Dscaml1;Dscaml1;Dscaml1;Dscaml1;Dscaml1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,32,114873,ENSMUSG00000032087,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24164,cg24770760,0.00000326,0.00000107,3.0495914,0.002489213,gain,ns,-0.000000917,0.00000181,-0.505631574,0.613474639,neg,ns,0.002053244,0.000531244,3.864974928,0.000135345,pos,ns,3.868559139,-0.0000963,0.0000183,-5.273339146,0.000000252,neg,yes,0.967197166,Usp15,Usp15_Exon,10,123121577,123121626,123121625,123121626,50,-,CCTCCTCCCATCCCTCCATAGTGGTTGGAAACAGCAATCAGATTATAGCG,"Exon (Usp15-211/Usp15, exon 20 of 22)",10,123105006,123196995,91990,2,Usp15-211,75369,Usp15-211;Usp15-201;Usp15-208;Usp15-203;Usp15-206;Usp15-209,Usp15;Usp15;Usp15;Usp15;Usp15;Usp15,0;0;0;-2096;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,14479,ENSMUSG00000020124,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20281,cg24570504,9.75E-08,0.00000132,0.073733155,0.94127027,gain,ns,0.00000114,0.00000225,0.505563871,0.613522122,pos,ns,0.001938215,0.00065785,2.946287376,0.003459916,pos,ns,2.460934454,-0.0000414,0.0000226,-1.831182575,0.068032938,neg,ns,0.070036503,Kctd12,Kctd12_Exon,14,102982198,102982247,102982246,102982247,50,+,AAAGAAGCGGCCTTTGCTGTCCCGGGCCAGCTCCTGCGGCTGCTGCTGCG,Promoter (<=1kb),14,102976581,102982637,6057,2,Kctd12-202,390,Kctd12-202;Kctd12-201,Kctd12;Kctd12,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,5,239217,ENSMUSG00000098557,conserved gene and region,14,102981706,102983032,1327,*,1327,169,0.7279578,0.96141282,0.127354936,1.57E-147,CpGisland,TRUE,U1,Pr-A
14932,cg26219540,0.0000736,0.00000524,14.05223256,4.81E-35,gain,yes,-0.0000045,0.0000089,-0.505525972,0.613548703,neg,ns,0.009589724,0.002607492,3.67775811,0.000277292,pos,ns,3.557063072,-0.000111014,0.0000897,-1.23801383,0.216647698,neg,ns,0.169006362,Nr2f1,Nr2f1_Exon,13,78181730,78181779,78181730,78181731,50,+,CGGCACAGTCGCGAACCATCTGGTGTGTATTAAGAGTGGTGCTGTAAATA,"Exon (3110006O06Rik-201/3110006O06Rik-201, exon 2 of 2)",13,78189872,78190443,572,2,Nr2f1-204,8664,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,25,55,13865,ENSMUSG00000069171,conserved gene and region,13,78181696,78181859,164,*,164,10,0.475609756,1.114130435,0.06097561,0.00000612,CpGisland,TRUE,U13,Hc-P
18716,cg27186131,0.00014764,0.000121453,1.215615972,0.225056173,gain,ns,0.000104232,0.000206332,0.50516398,0.613802613,pos,ns,0.063806238,0.060448377,1.055549233,0.291996136,pos,ns,0.534622895,-0.000220498,0.002078815,-0.106068977,0.915596229,neg,ns,0.5602688,Tenm4,Tenm4_Exon,7,96848000,96848049,96848000,96848001,50,-,CGTGGGTTATGAATATGAATCCTGCCCAGATCTAATCCTGTGGGAAAAAA,"Exon (Tenm4-201/Tenm4, exon 23 of 33)",7,96171246,96908569,737324,1,Tenm4-201,676754,Tenm4-201;Tenm4-203;Tenm4-202;Tenm4-212,Tenm4;Tenm4;Tenm4;Tenm4,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,17,26,23966,ENSMUSG00000048078,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23728,cg13916600,0.00000321,0.00000227,1.41697751,0.15749368,gain,ns,0.00000195,0.00000385,0.505124792,0.613830103,pos,ns,0.000721279,0.001128233,0.639300216,0.52309976,pos,ns,0.28141548,0.0000178,0.0000388,0.457884256,0.647356373,pos,ns,0.038181446,Bahcc1,Bahcc1_Promoter,11,120232766,120232815,120232814,120232815,50,+,GATTGGCAGTTCCCTGGCCCGGCGCCAGCCTATTGGGAGGCCTGTTTACG,Promoter (<=1kb),11,120232947,120292282,59336,1,Bahcc1-203,-132,Bahcc1-203;Bahcc1-201;Bahcc1-204;Bahcc1-202,Bahcc1;Bahcc1;Bahcc1;Bahcc1,0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,11,268515,ENSMUSG00000039741,conserved gene and region,11,120232785,120232993,209,*,209,20,0.660287081,0.905349794,0.09569378,3.62E-15,CpGisland,TRUE,NA,NRS
25457,cg26178630,0.0000192,0.00000328,5.876424437,1.08E-08,gain,yes,-0.00000281,0.00000556,-0.505042533,0.613887809,neg,ns,-0.00030588,0.001630341,-0.187617114,0.851299551,neg,ns,0.069917596,0.0000392,0.0000561,0.699210907,0.484944515,pos,ns,0.946685682,Gm9347,Gm9347_Intergenic_upstream,7,136738628,136738677,136738628,136738629,50,+,CGTAGATGTGAACAATCATACAAGAAAATAATTGAGGGCCATAAAACTTA,Distal Intergenic,7,136810909,136812515,1607,1,Gm9347-201,-72232,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,4,668771,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17257,cg17698896,-0.00000362,0.00000591,-0.613159995,0.540220144,loss,ns,-0.00000507,0.00001,-0.505033059,0.613894455,neg,ns,-0.008838021,0.002939911,-3.006220148,0.002861389,neg,ns,2.543423166,0.000138266,0.000101103,1.367571324,0.172436942,pos,ns,0.796344497,Nog,Nog_Intergenic_upstream,11,89318393,89318442,89318393,89318394,50,-,CGGCCAGAGCTGGCGCCAAGATCTCCAAGTTGCCCTGTGTTTATGTCATT,Distal Intergenic,11,89300638,89302332,1695,2,Nog-201,-16110,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,36,18121,ENSMUSG00000048616,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
279,cg07025752,-0.0000245,0.00000887,-2.76851543,0.005970183,loss,ns,0.00000761,0.0000151,0.504927225,0.613968703,pos,ns,-0.009560182,0.00441281,-2.166461241,0.031037641,neg,ns,1.508111297,0.000116057,0.000151756,0.764761404,0.444995402,pos,ns,0.67546881,Gm6140,Gm6140_Intergenic_upstream,3,4988816,4988865,4988864,4988865,50,-,TATGATAAGGCTCCTGCTGAGCTAATAAGCCCAACAAATGTCTGTGTCCG,Distal Intergenic,3,4890266,4891231,966,2,Gm6140-201,-97634,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,620283,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26114,cg04108195,-0.000000579,0.00000784,-0.073867201,0.941163695,loss,ns,-0.00000673,0.0000133,-0.504924147,0.613970863,neg,ns,0.005473936,0.003902034,1.402841783,0.161664741,pos,ns,0.79138469,-0.000339522,0.000134191,-2.530143844,0.011896485,neg,ns,0.833622647,Gm2505,Gm2505_Intergenic_downstream,3,143982873,143982922,143982921,143982922,50,+,TACACAGAGTTACATCCATCCAATTCAATTATAAATTAAATTGACTAACG,Distal Intergenic,3,143872995,143873819,825,1,Gm2505-201,109878,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,37,100039938,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1428,cg05559149,0.000000136,0.00000265,0.051390684,0.959047306,gain,ns,-0.00000228,0.00000451,-0.504920139,0.613973674,neg,ns,-0.000323311,0.001320451,-0.244849293,0.80673512,neg,ns,0.093269036,0.0000171,0.0000454,0.376161497,0.707054141,pos,ns,0.034922753,Cadps,Cadps_Promoter,14,12823127,12823176,12823175,12823176,50,+,GGGGAGGGAGCGGCGCTTACGTGTTTATTGGCTTAACTCTCCCGTGTCCG,Promoter (<=1kb),14,12372565,12823079,450515,2,Cadps-204,-48,Cadps-210;Cadps-202;Cadps-203;Cadps-204;Cadps-201,Cadps;Cadps;Cadps;Cadps;Cadps,0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,34,27062,ENSMUSG00000054423,mapped to different genes,14,12822717,12823224,508,*,508,45,0.667322835,0.834367472,0.088582677,5.95E-32,CpGisland,TRUE,U13,Hc-P
16317,cg02251557,0.000000463,0.00000132,0.350806065,0.725972119,gain,ns,-0.00000113,0.00000224,-0.504742825,0.614098079,neg,ns,0.000205113,0.000657239,0.31208321,0.75518709,pos,ns,0.121945443,-0.0000039,0.0000226,-0.172470156,0.863180466,neg,ns,0.035977405,Gm19426,Gm19426_Promoter,2,84743785,84743834,84743833,84743834,50,+,GATCCGCTCCCCCAGGCTCCCATTGGCTGTGGGTTAACCCTTTTGAAACG,Promoter (<=1kb),2,84742169,84743655,1487,2,Gm19426-201,-130,Gm19426-201,Gm19426,-130,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,2,100502874,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7101,cg00827518,-0.00000509,0.00000311,-1.638311054,0.102371349,loss,ns,0.00000266,0.00000528,0.504713344,0.614118764,pos,ns,-0.002210101,0.001546733,-1.428883582,0.15404453,neg,ns,0.812353719,0.00000116,0.0000532,0.021789179,0.982630144,pos,ns,0.942665755,Gm5973,Gm5973_Intergenic_upstream,1,40967446,40967495,40967494,40967495,50,+,CTATTCCTCACAAAGGCAAGATATATTATTGCTGTAACGCCATTATTCCG,Distal Intergenic,1,40863737,40864232,496,2,Gm5973-201,-103214,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,18,18,546733,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13534,cg02208929,0.000000932,0.00000256,0.363760031,0.716285167,gain,ns,0.0000022,0.00000435,0.504708285,0.614122314,pos,ns,0.002870762,0.001274525,2.252417952,0.02499518,pos,ns,1.602143723,-0.0000876,0.0000438,-1.999185186,0.046460953,neg,ns,0.944112209,Gm10172,Gm10172_Intergenic_downstream,7,71190421,71190470,71190469,71190470,50,-,ACTACCATTTAATGGGTCCTGGAAGATTAGGGTAGTGTCAGCCGGAACCG,Distal Intergenic,7,71332363,71332921,559,2,Gm10172-201,142500,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,31,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17078,cg07234865,0.0000124,0.00000245,5.055932036,0.000000734,gain,yes,-0.0000021,0.00000417,-0.504692079,0.614133685,neg,ns,0.001782268,0.001220952,1.459735656,0.145375347,pos,ns,0.837509235,-0.0000408,0.000042,-0.972854608,0.331384052,neg,ns,0.085155754,Rhbg,Rhbg_Exon,3,88215598,88215647,88215598,88215599,50,+,CGGGGTTGGTTGTTATCTTTGGTTATCTAGCTGTATGAGTGGTGTGGAGT,"Exon (Mir9-1-201/Mir9-1-201, exon 1 of 1)",3,88242874,88254709,11836,2,Rhbg-201,39062,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,58176,ENSMUSG00000104445,mapped to different genes,3,88214879,88215599,721,*,721,62,0.665742025,0.77619767,0.085991678,5.98E-43,CpGisland,TRUE,U3,Pr-B
25606,cg13082524,0.000043,0.00000335,12.83412257,1.58E-30,gain,yes,-0.00000287,0.00000569,-0.504646193,0.614165881,neg,ns,0.002937193,0.001667802,1.761115697,0.079204677,pos,ns,1.101249175,-0.0000313,0.0000574,-0.545955237,0.585489371,neg,ns,0.090164284,Ebf3,Ebf3_Intron,7,137310211,137310260,137310259,137310260,50,+,GGTGGGTTTTGAGCAGAGGCTCCGCCAGATGGTGCGAAGCCCTAGGTGCG,"Intron (Ebf3-204/Ebf3, intron 4 of 15)",7,137193673,137314445,120773,2,Ebf3-204,4185,Ebf3-204;Ebf3-201;Ebf3-202;Ebf3-203;Ebf3-208;Ebf3-206,Ebf3;Ebf3;Ebf3;Ebf3;Ebf3;Ebf3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,62,84,13593,ENSMUSG00000010476,conserved gene and region,7,137310178,137310447,270,*,270,30,0.722222222,0.853170423,0.111111111,1.31E-24,CpGisland,TRUE,NA,NRS
20478,cg01973528,0.0000275,0.00000395,6.96943778,1.92E-11,gain,yes,-0.00000339,0.00000671,-0.504517879,0.614255919,neg,ns,0.003541912,0.001967015,1.800653139,0.07272945,pos,ns,1.138289694,-0.000054,0.0000676,-0.79864408,0.425108245,neg,ns,0.08413797,Hoxc4,Hoxc4_Intergenic_downstream,15,103061733,103061782,103061733,103061734,50,-,CGGCTTTCGCTGCTGTTGAAGGTTAAAAGATGGTCTTCCCTTGACAAGTG,Distal Intergenic,15,103034395,103036852,2458,1,Hoxc4-201,27387,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,32,91,15423,ENSMUSG00000075394,mapped to different genes,15,103061537,103061809,273,*,273,19,0.586080586,0.8125,0.06959707,7.69E-12,CpGisland,TRUE,U13,Hc-P
9608,cg03834350,0.0000163,0.000005,3.258883359,0.001242759,gain,ns,-0.00000429,0.0000085,-0.504349221,0.614374274,neg,ns,-0.000533562,0.002489811,-0.214298089,0.830455499,neg,ns,0.080683635,0.000011,0.0000856,0.128694698,0.897682683,pos,ns,0.899973988,Ncam1,Ncam1_Exon,9,49506977,49507026,49507025,49507026,50,+,GGTCAATATCTGGGGTCTTGAAGTTCCCTTCGTCCATTTTAAAGTCCTCG,"Exon (Ncam1-205/Ncam1, exon 19 of 20)",9,49502136,49798925,296790,2,Ncam1-204,291899,Ncam1-204;Ncam1-205;Ncam1-202,Ncam1;Ncam1;Ncam1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,16,17967,ENSMUSG00000039542,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5443,cg00951719,0.0000346,0.000011,3.15539416,0.001760166,gain,ns,-0.00000939,0.0000186,-0.504306647,0.614404151,neg,ns,0.013926363,0.005455516,2.552712519,0.011167774,pos,ns,1.952033365,-0.0000674,0.000187615,-0.359282344,0.71962848,neg,ns,0.227352598,Twist1,Twist1_Intergenic_downstream,12,33962349,33962398,33962349,33962350,50,+,CGCTCTCATGATGTCAGGCGGTTTTCCCTGCATCTGTAATTTGAAGAAAA,Distal Intergenic,12,33957671,33959829,2159,1,Twist1-201,4678,Twist1-201,Twist1,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,7,22160,ENSMUSG00000035799,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
26831,cg26931783,-0.0000037,0.00000833,-0.444657376,0.656877659,loss,ns,0.00000714,0.0000142,0.50425239,0.614442229,pos,ns,-0.000787064,0.004145945,-0.18983945,0.849559185,neg,ns,0.07080636,-0.00000125,0.000142579,-0.00878663,0.992995026,neg,ns,0.807945618,Mylk2,Mylk2_Exon,2,152920600,152920649,152920600,152920601,50,+,CGCCTTAAGTCCCAGATCTTGCTTAAGAAATACCTCATGAAGAGGCGCTG,"Exon (Mylk2-201/Mylk2, exon 11 of 12)",2,152911352,152923068,11717,1,Mylk2-201,9248,Mylk2-201,Mylk2,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,228785,ENSMUSG00000027470,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25503,cg24005265,-0.0000103,0.00000177,-5.803076112,1.61E-08,loss,yes,0.00000152,0.00000301,0.504246736,0.614446197,pos,ns,0.000031,0.000882973,0.035091308,0.972029517,pos,ns,0.012320547,-0.0000556,0.0000304,-1.830625142,0.068116389,neg,ns,0.967821703,Mgmt,Mgmt_Intron,7,137005412,137005461,137005412,137005413,50,+,CGAAGATTACCACCCAACAGTGTAATCAAGGTGCTAGGTACTAATGCAAG,"Intron (Mgmt-201/Mgmt, intron 2 of 4)",7,136894614,137130266,235653,1,Mgmt-201,110798,Mgmt-201,Mgmt,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,16,17314,ENSMUSG00000054612,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4308,cg19930131,-0.0000565,0.00000986,-5.72949084,2.39E-08,loss,yes,-0.00000845,0.0000168,-0.504127474,0.614529899,neg,ns,-0.009235657,0.004908474,-1.881573906,0.060830736,neg,ns,1.215876928,-0.0000464,0.000168802,-0.275026472,0.78347911,neg,ns,0.810509321,Glis3,Glis3_Intron,19,28289630,28289679,28289630,28289631,50,-,CGTTACTGGGGGAACTGCAAATTGAATTCGGCTTCTGAGACAATCAAGAC,"Intron (Glis3-209/Glis3, intron 8 of 10)",19,28258851,28680077,421227,2,Glis3-209,390398,Glis3-209;Glis3-204;Glis3-201;Glis3-210;Glis3-207,Glis3;Glis3;Glis3;Glis3;Glis3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,8,226075,ENSMUSG00000052942,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21202,cg02370248,-0.0000174,0.00000352,-4.933730689,0.00000132,loss,yes,0.00000301,0.00000598,0.504104584,0.614545965,pos,ns,-0.001640387,0.001752071,-0.936256178,0.349870089,neg,ns,0.456093185,0.0000266,0.0000603,0.440788414,0.659673411,pos,ns,0.931180326,Mpped2,Mpped2_Exon,2,106744735,106744784,106744735,106744736,50,+,CGGGCCACACGCGGTTTGTCTGCATCTCAGACACACACTCCAGAACAGAT,"Exon (Mpped2-202/Mpped2, exon 3 of 7)",2,106693269,106868356,175088,1,Mpped2-202,51466,Mpped2-202;Mpped2-206;Mpped2-201;Mpped2-203;Mpped2-204;Mpped2-205,Mpped2;Mpped2;Mpped2;Mpped2;Mpped2;Mpped2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,16,33,77015,ENSMUSG00000016386,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22686,cg03017497,0.0000018,0.0000022,0.818107202,0.413924362,gain,ns,0.00000188,0.00000374,0.504028151,0.614599611,pos,ns,0.001281132,0.001095299,1.169664099,0.243034682,pos,ns,0.614331746,-0.0000407,0.0000377,-1.081597376,0.280272125,neg,ns,0.054150738,Maf,Maf_Exon,8,115705929,115705978,115705977,115705978,50,-,ACGTGTCTCTGCTGCACCCTCTTGAAGCGGCAGGACTGGGCATAGCCGCG,"Exon (Maf-201/Maf, exon 1 of 3)",8,115682942,115707096,24155,2,Maf-201,1118,Maf-201;Maf-202,Maf;Maf,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,23,17132,ENSMUSG00000055435,conserved gene and region,8,115705919,115706789,871,*,871,113,0.732491389,0.967968135,0.129735936,6.29E-100,CpGisland,TRUE,U1,Pr-A
6119,cg04467805,-0.0000131,0.00000402,-3.259384829,0.001240637,loss,ns,-0.00000344,0.00000683,-0.503712981,0.614820844,neg,ns,-0.005927379,0.00200038,-2.963125988,0.003281124,neg,ns,2.483977363,0.000193354,0.0000688,2.810671012,0.005258431,pos,ns,0.084561415,Lhx6,Lhx6_Intron,2,36104197,36104246,36104197,36104198,50,+,CGTGGCTCTTGAAGTAATCGCTTAGTTCCCTTGCAATCCAAGCCTCTGAG,"Intron (Lhx6-201/Lhx6, intron 1 of 9)",2,36081953,36105271,23319,2,Lhx6-201,1025,Lhx6-202;Lhx6-204;Lhx6-201;Lhx6-205;Lhx6-203;Lhx6-208;Lhx6-209;Lhx6-207,Lhx6;Lhx6;Lhx6;Lhx6;Lhx6;Lhx6;Lhx6;Lhx6,0;0;0;0;0;0;-605;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,9,16874,ENSMUSG00000026890,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
7340,cg17419897,-0.00000132,0.00000104,-1.274900312,0.203299231,loss,ns,0.000000889,0.00000176,0.503685711,0.614839988,pos,ns,0.001214679,0.00051699,2.349521803,0.019424683,pos,ns,1.711646063,-0.0000428,0.0000178,-2.406630065,0.016685148,neg,ns,0.972584171,Afg1l,Afg1l_Intron,10,42340129,42340178,42340177,42340178,50,+,TTGGGCATTGTGTTCTAAATGTATTCTCTTTCAAGAGAAATTAACTTACG,"Intron (Afg1l-204/Afg1l, intron 7 of 10)",10,42312585,42478280,165696,2,Afg1l-204,138102,Afg1l-204;Afg1l-201;Afg1l-202;Afg1l-203,Afg1l;Afg1l;Afg1l;Afg1l,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,6,215951,ENSMUSG00000038302,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26310,cg00504333,0.0000162,0.0000154,1.055283294,0.292117516,gain,ns,0.0000132,0.0000261,0.503670526,0.614850648,pos,ns,-0.009906119,0.007656884,-1.293753352,0.196713723,neg,ns,0.706165341,0.000588258,0.00026332,2.234006075,0.02619552,pos,ns,0.319393309,Wasf3,Wasf3_Exon,5,146451912,146451961,146451960,146451961,50,+,GCTAACAACTTCTACATCAGAGCAAATTCTCTTCAAGACAGAATTGATCG,"Exon (Wasf3-201/Wasf3, exon 4 of 10)",5,146384985,146473615,88631,1,Wasf3-201,66927,Wasf3-201;Wasf3-202,Wasf3;Wasf3,0;-3648,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,245880,ENSMUSG00000029636,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18962,cg16177218,0.00000315,0.0000112,0.282470178,0.777771513,gain,ns,0.00000954,0.0000189,0.503655456,0.614861227,pos,ns,0.016117765,0.005549799,2.904207219,0.003946351,pos,ns,2.4038043,-0.000766233,0.000190857,-4.014693491,0.0000747,neg,ns,0.74517642,Arhgef28,Arhgef28_Exon,13,98075172,98075221,98075172,98075173,50,-,CGAGCCAGCCTGCAAGCCATGTTGTCCACGTAGGTCACTGAGCCAGAGCC,"Exon (Arhgef28-201/Arhgef28, exon 4 of 36)",13,97899469,98206167,306699,2,Arhgef28-201,130946,Arhgef28-201;Arhgef28-206;Arhgef28-202,Arhgef28;Arhgef28;Arhgef28,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,110596,ENSMUSG00000021662,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25512,cg12181207,-0.00000166,0.000000739,-2.250523385,0.025116445,loss,ns,0.000000632,0.00000126,0.503576817,0.614916434,pos,ns,-0.000355007,0.000367967,-0.964779117,0.335407463,neg,ns,0.474427278,-0.00000487,0.0000127,-0.384959403,0.700531473,neg,ns,0.025911815,Zbtb40,Zbtb40_fiveUTR,4,137048631,137048680,137048631,137048632,50,+,CGTTTCTATGGTTACCTGTTCAGCACCGATTCAAACTGCCGTTCTTTATT,Promoter (<=1kb),4,136979732,137048695,68964,2,Zbtb40-201,15,Zbtb40-201;Zbtb40-202,Zbtb40;Zbtb40,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,3,230848,ENSMUSG00000060862,conserved gene but different region,4,137048342,137048880,539,*,539,57,0.6716141,0.937791887,0.105751392,5.55E-45,CpGisland,TRUE,U2,Pr-W
2262,cg11815968,0.00000122,0.00000159,0.767065939,0.4436261,gain,ns,-0.00000136,0.00000271,-0.503525188,0.614952681,neg,ns,-0.000350166,0.000792508,-0.441844854,0.658909541,neg,ns,0.181174204,-0.000026,0.0000273,-0.952326462,0.341673371,neg,ns,0.033967735,Meis1,Meis1_Intergenic_downstream,11,18877480,18877529,18877528,18877529,50,+,AATTTTTCCACATCAAATATTTAAGCATCAGATTAAGGGAGCCAGTTCCG,Downstream (2-3kb),11,18880668,19012002,131335,2,Meis1-203,134473,Meis1-206;Meis1-202;Meis1-209;Meis1-201;Meis1-203;Meis1-208;Meis1-207,Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1,0;0;0;0;0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,17,88,17268,ENSMUSG00000020160,mapped to different genes,11,18877519,18877681,163,*,163,12,0.601226994,0.958823529,0.073619632,6.33E-08,CpGisland,TRUE,U2,Pr-W
9358,cg06998544,0.0000251,0.00000658,3.815978104,0.000163744,gain,ns,-0.00000563,0.0000112,-0.503516762,0.614958597,neg,ns,0.004574535,0.003276047,1.396357956,0.163605748,pos,ns,0.786201443,-0.0000981,0.000112663,-0.870362969,0.384775534,neg,ns,0.594943289,Gm8588,Gm8588_Intron,13,48384127,48384176,48384127,48384128,50,+,CGGAGGAAAAGCCCAGGAATAAATAGTTGCTGTAACGGCCAGGGGTATTG,"Intron (Gm48648-201/Gm48648-201, intron 1 of 2)",13,48312670,48314251,1582,1,Gm8588-201,71457,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,3,667351,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25610,cg02176373,0.000027,0.00000861,3.14202412,0.001839918,gain,ns,0.00000736,0.0000146,0.503501353,0.614969415,pos,ns,0.007189355,0.004283793,1.678268615,0.094302424,pos,ns,1.025477145,0.0000366,0.000147319,0.248681057,0.803772171,pos,ns,0.060844991,Ebf3,Ebf3_fiveUTR,7,137314192,137314241,137314240,137314241,50,+,GTTGTTGTTGTTTGCAGGCGCGCTCAACGTGGTGTCATCCTAGCCAGGCG,Promoter (<=1kb),7,137193673,137314445,120773,2,Ebf3-204,204,Ebf3-204;Ebf3-201;Ebf3-202;Ebf3-203;Ebf3-208;Ebf3-206,Ebf3;Ebf3;Ebf3;Ebf3;Ebf3;Ebf3,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,84,13593,ENSMUSG00000010476,conserved gene but different region,7,137313547,137314777,1231,*,1231,177,0.73679935,1.059442192,0.14378554,1.41E-165,CpGisland,TRUE,U3,Pr-B
25497,cg08471214,-0.0000296,0.000015,-1.967398077,0.050028687,loss,ns,-0.0000129,0.0000255,-0.503382533,0.615052839,neg,ns,-0.011396574,0.007479592,-1.523689231,0.128605819,neg,ns,0.89073938,0.000182614,0.000257223,0.70994456,0.478272197,pos,ns,0.582410735,Epha8,Epha8_Intergenic_upstream,4,136967553,136967602,136967601,136967602,50,-,TTTGATGAGTTTTAGCAGCTTCAGCAAAACTCTAATTTGAATTTCAGGCG,Distal Intergenic,4,136929419,136956816,27398,2,Epha8-201,-10786,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,4,13842,ENSMUSG00000028661,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
23097,cg12414897,-0.00000282,0.00000128,-2.201365489,0.028446795,loss,ns,0.0000011,0.00000218,0.503266395,0.615134383,pos,ns,0.000820483,0.000637911,1.286202616,0.199332155,pos,ns,0.700422637,-0.00000831,0.0000219,-0.378875439,0.705039722,neg,ns,0.969255936,Rnf220,Rnf220_Intron,4,117297784,117297833,117297832,117297833,50,-,ATCTTTAAGAAAATAATTCACGGCTTCTTCACCCTTTAATATGATAGCCG,"Intron (Rnf220-201/Rnf220, intron 4 of 14)",4,117271463,117497052,225590,2,Rnf220-201,199219,Rnf220-201;Rnf220-202;Rnf220-208,Rnf220;Rnf220;Rnf220,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19424,cg20610965,-0.0000125,0.00000352,-3.548433517,0.000447516,loss,ns,0.00000301,0.00000598,0.503265615,0.615134931,pos,ns,-0.004024252,0.001750726,-2.298619498,0.022191626,neg,ns,1.653810871,0.0000435,0.0000602,0.723171672,0.470119698,pos,ns,0.884027332,Gm12689,Gm12689_Promoter,4,99295031,99295080,99295031,99295032,50,-,CGGGGCTCTTTATAGGTCAAGTCGGTGCTTTATGAGCCTGCGACTCCCTA,Promoter (<=1kb),4,99295900,99297258,1359,1,Gm12689-201,-869,Gm12689-201,Gm12689,-820,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,7,26,100137011,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19620,cg13505192,0.00000071,0.00000116,0.610175897,0.542192326,gain,ns,0.000000994,0.00000198,0.503076435,0.615267772,pos,ns,0.000822572,0.000578745,1.421303323,0.156233767,pos,ns,0.806225096,-0.0000111,0.0000199,-0.55620013,0.578475289,neg,ns,0.975340342,Dip2b,Dip2b_Exon,15,100151204,100151253,100151252,100151253,50,-,TCTGCTGCCTTGCAACAGAGCTTACAGAATGCTGAGTCCTGGATCAACCG,"Exon (Dip2b-202/Dip2b, exon 5 of 38)",15,100038664,100219473,180810,1,Dip2b-202,112540,Dip2b-202;Dip2b-201,Dip2b;Dip2b,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,8,239667,ENSMUSG00000023026,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23147,cg09899974,-0.0000114,0.00000535,-2.125719093,0.034316921,loss,ns,0.00000457,0.00000909,0.503059342,0.615279776,pos,ns,0.00000921,0.002663295,0.003458334,0.997242879,pos,ns,0.001199056,0.0000189,0.0000916,0.206175137,0.836789447,pos,ns,0.912850112,Rnf220,Rnf220_Intron,4,117349848,117349897,117349848,117349849,50,+,CGATTTTCTGCTGAAATATTTCTTTATTAATAGTAATTGAGGGTATAAAT,"Intron (Rnf220-201/Rnf220, intron 2 of 14)",4,117271463,117497052,225590,2,Rnf220-201,147155,Rnf220-201;Rnf220-202;Rnf220-207,Rnf220;Rnf220;Rnf220,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12767,cg17783509,0.0000537,0.00000747,7.193748034,4.76E-12,gain,yes,0.00000638,0.0000127,0.502988912,0.615329235,pos,ns,0.011742222,0.003717,3.159059233,0.001738868,pos,ns,2.759733419,-0.0000508,0.000127827,-0.397728178,0.691104301,neg,ns,0.207134456,Phox2b,Phox2b_fiveUTR,5,67099267,67099316,67099315,67099316,50,+,TATCATTGATTCCTGCATCTCTAATTAGAATTTAATACCACACCATTACG,Promoter (<=1kb),5,67094399,67099301,4903,2,Phox2b-201,0,Phox2b-201;Phox2b-202,Phox2b;Phox2b,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,28,18935,ENSMUSG00000012520,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
358,cg09099665,0.000000168,0.00000425,0.039463727,0.968546076,gain,ns,-0.00000363,0.00000722,-0.502987881,0.615329959,neg,ns,0.002422028,0.002115538,1.144875744,0.253143773,pos,ns,0.596632751,-0.0000666,0.0000728,-0.915483156,0.360649612,neg,ns,0.936211649,Klhl29,Klhl29_Intron,12,5239931,5239980,5239931,5239932,50,+,CGTTAAGTACCATATGGCCGCTGGTAGGAAAACGCTAACATGTTTCAACA,"Intron (Klhl29-201/Klhl29, intron 2 of 13)",12,5077472,5375682,298211,2,Klhl29-201,135702,Klhl29-201;Klhl29-202,Klhl29;Klhl29,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,23,208439,ENSMUSG00000020627,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5755,cg10241949,0.0000269,0.00000577,4.665128017,0.00000459,gain,ns,0.00000493,0.00000981,0.502802148,0.615460398,pos,ns,0.007123201,0.002874105,2.478406108,0.013729104,pos,ns,1.862357798,-0.0000217,0.0000988,-0.219289079,0.826569182,neg,ns,0.081873227,Kctd15,Kctd15_Promoter,7,34653363,34653412,34653411,34653412,50,-,CAAAGTTAAATCAAGAGGCAGACACTTGGAGACCACAGATGGGAAGCTCG,Promoter (<=1kb),7,34639014,34654398,15385,2,Kctd15-202,986,Kctd15-202;Kctd15-203;Kctd15-201;Kctd15-206;Kctd15-208;Kctd15-204;Kctd15-205;Kctd15-207,Kctd15;Kctd15;Kctd15;Kctd15;Kctd15;Kctd15;Kctd15;Kctd15,0;0;0;-4619;0;0;0;3320,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,7,25,233107,ENSMUSG00000030499,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
22657,cg07275860,-0.00000631,0.00000218,-2.898368226,0.004018571,loss,ns,-0.00000186,0.0000037,-0.502746366,0.615499575,neg,ns,-0.001456567,0.001084284,-1.343343698,0.180143262,neg,ns,0.744381977,-0.0000375,0.0000373,-1.005169523,0.315599168,neg,ns,0.039044149,Rab35,Rab35_fiveUTR,5,115631982,115632031,115632030,115632031,50,+,GGAGGTGTTTCTGTCAGTTCCGGCTGTTTGTTCGGGAAGTGGATCCGCCG,Promoter (<=1kb),5,115631908,115647736,15829,1,Rab35-201,74,Rab35-201;Rab35-202,Rab35;Rab35,0;-110,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,2,77407,ENSMUSG00000029518,conserved gene and region,5,115631432,115632564,1133,*,1133,156,0.747572816,1.000860722,0.137687555,1.78E-142,CpGisland,TRUE,U1,Pr-A
23567,cg25162348,-0.0000192,0.00000542,-3.54964221,0.000445547,loss,ns,0.00000463,0.0000092,0.502688037,0.615540543,pos,ns,-0.003210621,0.002695805,-1.190969193,0.234576783,neg,ns,0.629714974,-0.000160968,0.0000927,-1.736277058,0.083508353,neg,ns,0.815120401,Ctdspl,Ctdspl_Exon,9,119031822,119031871,119031870,119031871,50,+,CAGGATAGGCTGTGCAGGTCCCAATGGGCCTATTCTTGGTTACTTGCACG,"Exon (Mir26a-1-201/Mir26a-1-201, exon 1 of 1)",9,118926453,119043998,117546,1,Ctdspl-201,105369,Ctdspl-201;Ctdspl-202;Ctdspl-204;Ctdspl-203,Ctdspl;Ctdspl;Ctdspl;Ctdspl,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,7,69274,ENSMUSG00000047409,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5066,cg24262627,-0.00000394,0.00000155,-2.538010943,0.011637793,loss,ns,0.00000133,0.00000264,0.502624129,0.615585431,pos,ns,0.001000159,0.000772395,1.294879458,0.196325393,pos,ns,0.707023524,-0.0000132,0.0000266,-0.498638284,0.618387846,neg,ns,0.041944227,Fosl2,Fosl2_fiveUTR,5,32136698,32136747,32136698,32136699,50,+,CGGATCATGTACCAGGATTATCCCGGGAACTTTGACACCTCGTCCCGGGG,Promoter (<=1kb),5,32135801,32157842,22042,1,Fosl2-201,897,Fosl2-201;Fosl2-202,Fosl2;Fosl2,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,8,14284,ENSMUSG00000029135,conserved gene and region,5,32136243,32136838,596,*,596,67,0.686241611,0.96036556,0.112416107,9.84E-55,CpGisland,TRUE,U1,Pr-A
8978,cg01455644,0.0000483,0.0000133,3.623257025,0.000339837,gain,ns,0.0000114,0.0000226,0.5025469,0.615639676,pos,ns,0.024372079,0.006632585,3.674597217,0.000280601,pos,ns,3.551911008,-0.000576025,0.000228094,-2.52538502,0.012055443,neg,ns,0.397120815,Gm13469,Gm13469_Intergenic_upstream,2,46450960,46451009,46451008,46451009,50,+,CAGTATGTGATTTGCTCTGGTTTACTTTTTAACACATCCCAGAGGCTTCG,Distal Intergenic,2,46406220,46406569,350,2,Gm13469-201,-44391,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,20,27,383690,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7428,cg06847330,0.00000252,0.00000237,1.060808924,0.289602511,gain,ns,0.00000202,0.00000403,0.502495621,0.615675696,pos,ns,-0.001579511,0.001180612,-1.33787482,0.181917843,neg,ns,0.740124702,0.00000397,0.0000406,0.097803072,0.922151873,pos,ns,0.949557594,Grik4,Grik4_Exon,9,42622142,42622191,42622142,42622143,50,+,CGGTAAGACCTTCCAATTCTACCTGTCCAAGAGAGAGTGAGTTACAGCAC,"Exon (Grik4-202/Grik4, exon 11 of 21)",9,42518135,42944493,426359,2,Grik4-202,322302,Grik4-202;Grik4-201,Grik4;Grik4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,8,110637,ENSMUSG00000032017,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16349,cg25126226,-0.00000476,0.00000257,-1.851603983,0.065033491,loss,ns,-0.0000022,0.00000437,-0.502449089,0.615708382,neg,ns,-0.00143579,0.00127998,-1.121728397,0.262846058,neg,ns,0.580298532,0.00000087,0.000044,0.019770457,0.984239204,pos,ns,0.945352285,Mrm1,Mrm1_Intron,11,84766181,84766230,84766229,84766230,50,-,AGGAGTACAACAGGGCAATTAACCCACTAATACACTAGGCTATTACATCG,"Intron (Gm11431-201/Gm11431-201, intron 2 of 2)",11,84814743,84815390,648,2,Mrm1-203,49209,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,42,217038,ENSMUSG00000018405,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
317,cg15147458,0.00000315,0.00000188,1.678092905,0.094336751,gain,ns,-0.0000016,0.00000319,-0.50236922,0.615764487,neg,ns,0.00293152,0.000934866,3.13576525,0.001878388,pos,ns,2.726214765,-0.000138055,0.0000321,-4.294092102,0.0000235,neg,ns,0.048217543,Cnih2,Cnih2_threeUTR,19,5094276,5094325,5094324,5094325,50,+,ACACTGACCTTCCTCAGGAGGCAGCAGATGCGTTCGATGTTTTTTAAACG,3' UTR,19,5092868,5098521,5654,2,Cnih2-201,4196,Cnih2-201;Cnih2-202;Rab1b-201;Yif1a-205;Yif1a-206;Yif1a-201;Yif1a-202;Yif1a-204;Yif1a-203,Cnih2;Cnih2;Rab1b;Yif1a;Yif1a;Yif1a;Yif1a;Yif1a;Yif1a,0;0;12747;5738;5731;5731;5721;5716;5348,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,4,12794,ENSMUSG00000024873,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7290,cg26056424,0.0000768,0.0000111,6.928358958,2.47E-11,gain,yes,-0.00000946,0.0000188,-0.502305055,0.615809562,neg,ns,0.019353322,0.005520352,3.505812782,0.000522398,pos,ns,3.281998759,-0.000423825,0.000189844,-2.232484966,0.02629689,neg,ns,0.28972571,Lsamp,Lsamp_Exon,16,42134394,42134443,42134394,42134395,50,-,CGAGGTCTCCTCGGCGGATGTCAAACAAGTCAAGGTCACTGTGAACTGTG,"Exon (Lsamp-206/Lsamp, exon 6 of 9)",16,39984371,42176295,2191925,1,Lsamp-206,2150023,Lsamp-206;Lsamp-201;Lsamp-202,Lsamp;Lsamp;Lsamp,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,23,268890,ENSMUSG00000061080,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15077,cg17271471,0.00000431,0.00000104,4.162512361,0.0000408,gain,ns,-0.000000884,0.00000176,-0.502269254,0.615834713,neg,ns,-0.000557384,0.000515412,-1.081434104,0.280344597,neg,ns,0.55230781,0.0000304,0.0000177,1.715414214,0.087268522,pos,ns,0.032084755,Zfp827,Zfp827_fiveUTR,8,79028389,79028438,79028389,79028390,50,+,CGTTTCCATTGAAGAATATTACGCTCGGGGACAAGCCAGGTGCACGACCA,Promoter (<=1kb),8,79028437,79071837,43401,1,Zfp827-201,0,Zfp827-201;Zfp827-202;Zfp827-203;Zfp827-209,Zfp827;Zfp827;Zfp827;Zfp827,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,28,622675,ENSMUSG00000071064,conserved gene and region,8,79028199,79028434,236,*,236,23,0.588983051,1.130833333,0.097457627,1.44E-17,CpGisland,TRUE,U1,Pr-A
1701,cg12974834,0.00000187,0.00000227,0.82249467,0.411427617,gain,ns,-0.00000194,0.00000386,-0.502076023,0.615970467,neg,ns,0.001283181,0.001130787,1.134767963,0.257349211,pos,ns,0.589477159,-0.0000253,0.0000389,-0.651758174,0.515040092,neg,ns,0.943229024,Ss18,Ss18_Intergenic_downstream,18,14621950,14621999,14621950,14621951,50,+,CGCATCAGGAAATCCTGACTTTTTGGTGCCAAGGGGGTAATTAATATCAG,Downstream (2-3kb),18,14633542,14637406,3865,2,Ss18-212,15407,Ss18-202;Ss18-201;Ss18-210;Ss18-203;Ss18-206;Ss18-205,Ss18;Ss18;Ss18;Ss18;Ss18;Ss18,0;0;0;0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,2,10,268996,ENSMUSG00000037013,conserved gene and region,18,14621801,14621951,151,*,151,12,0.516556291,1.211229947,0.079470199,2.68E-08,CpGisland,TRUE,U11,Tr-P
8946,cg20407055,0.0000468,0.00000392,11.93958399,2.73E-27,gain,yes,0.00000334,0.00000665,0.502035483,0.61599895,pos,ns,0.006652113,0.001949632,3.411984275,0.000730496,pos,ns,3.136382018,-0.000139508,0.000067,-2.080730019,0.038279427,neg,ns,0.039918316,Bmp4,Bmp4_Exon,14,46386025,46386074,46386025,46386026,50,+,CGCGCCTCCTAGCAGGACTTGGCATAATAAAACGACCATCAGCATTCGGT,"Exon (Bmp4-201/Bmp4, exon 3 of 4)",14,46383520,46390669,7150,2,Bmp4-201,4595,Bmp4-201;Bmp4-202;Bmp4-204;Bmp4-203;Gm15217-202;Gm15217-201;Gm15217-203,Bmp4;Bmp4;Bmp4;Bmp4;Gm15217;Gm15217;Gm15217,0;0;0;4461;6611;6558;4898,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,8,12159,ENSMUSG00000021835,conserved gene but different region,14,46385825,46386072,248,*,248,22,0.580645161,1.05982906,0.088709677,6.67E-16,CpGisland,TRUE,U3,Pr-B
12180,cg16456408,0.0000198,0.00000308,6.429474655,4.84E-10,gain,yes,0.00000262,0.00000523,0.501940675,0.616065563,pos,ns,-0.000314262,0.001531221,-0.205235913,0.837522511,neg,ns,0.077003511,0.0000577,0.0000527,1.094929027,0.274397701,pos,ns,0.860311015,Map2k5,Map2k5_Intron,9,63230517,63230566,63230565,63230566,50,-,CTGGCGCAGACAGATGCACCAGGAACCCTAAATGACAGTTTTGGCCTCCG,"Intron (Map2k5-201/Map2k5, intron 17 of 21)",9,63163768,63377902,214135,2,Map2k5-201,147336,Map2k5-201;Map2k5-202,Map2k5;Map2k5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,34,37,23938,ENSMUSG00000058444,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12260,cg20940153,0.000061,0.0000105,5.838026371,1.33E-08,gain,yes,0.00000891,0.0000178,0.501939571,0.616066339,pos,ns,0.0081232,0.005202676,1.561350301,0.119461377,pos,ns,0.922772484,-0.00024108,0.00017892,-1.347419178,0.178829248,neg,ns,0.088090061,Xkr6,Xkr6_Promoter,14,63606273,63606322,63606321,63606322,50,-,GCACAGGAGGGCGGCCATCTTGGCCGGGAGGGTAGGGCTGGGGAGCTGCG,Promoter (<=1kb),14,63606503,63820809,214307,1,Xkr6-201,-230,Xkr6-201;Xkr6-203;Xkr6-205,Xkr6;Xkr6;Xkr6,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,1,11,219149,ENSMUSG00000035067,conserved gene but different region,14,63606019,63607249,1231,*,1231,130,0.728675873,0.7956862,0.105605199,1.15E-101,CpGisland,TRUE,U3,Pr-B
24315,cg02105343,-0.00000774,0.00000641,-1.207126105,0.22830384,loss,ns,0.00000547,0.0000109,0.501841921,0.616134952,pos,ns,-0.005933097,0.003192394,-1.858510324,0.064044244,neg,ns,1.193519897,0.000307637,0.000109786,2.802144549,0.005395851,pos,ns,0.848129954,Pou3f1,Pou3f1_Intron,4,124615801,124615850,124615801,124615802,50,-,CGTTGCCTTGGTAAGAGCTAATGGATGGCCGCCATAAATTCACTGCACAT,"Intron (Gm2164-201/Gm2164-201, intron 1 of 1)",4,124656807,124660655,3849,1,Pou3f1-201,-41006,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,43,85,18991,ENSMUSG00000090125,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19308,cg17873303,-0.000014,0.0000101,-1.393052992,0.164601893,loss,ns,0.00000857,0.0000171,0.501676781,0.616250995,pos,ns,-0.002376713,0.005002046,-0.475148204,0.635015936,neg,ns,0.197215376,-0.000119491,0.00017202,-0.694636225,0.48780358,neg,ns,0.67667071,Prkg2,Prkg2_Exon,5,98967760,98967809,98967808,98967809,50,+,AAGCAGGCCTCCAGAAGCATGTATACATACTTATTGTCCTTGAAAGTACG,"Exon (Prkg2-203/Prkg2, exon 13 of 19)",5,98929773,99037351,107579,2,Prkg2-203,69542,Prkg2-203;Prkg2-201;Prkg2-202,Prkg2;Prkg2;Prkg2,0;0;-1004,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,19092,ENSMUSG00000029334,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13340,cg21396365,-0.0000759,0.0000122,-6.206907664,1.73E-09,loss,yes,-0.0000104,0.0000208,-0.501652422,0.616268113,neg,ns,-0.016608341,0.006089313,-2.727457244,0.00674614,neg,ns,2.170944655,0.000141947,0.000209411,0.677838374,0.498379777,pos,ns,0.790135274,0610010K14Rik,0610010K14Rik_threeUTR,11,70236883,70236932,70236883,70236884,50,-,CGTTCCTTGATGACACAGCTGATGTGATTAAGATCGTCCCCAAATCGCTT,Promoter (<=1kb),11,70235206,70236904,1699,2,0610010K14Rik-210,0,0610010K14Rik-211;0610010K14Rik-210;0610010K14Rik-205;0610010K14Rik-209;0610010K14Rik-202;0610010K14Rik-204;0610010K14Rik-208;0610010K14Rik-207;0610010K14Rik-203;0610010K14Rik-213;0610010K14Rik-212;0610010K14Rik-206;0610010K14Rik-201;0610010K14Rik-214;Alox12-201;Gm21988-201;Gm21988-202;Rnasek-202;Rnasek-201;Rnasek-203,0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;Alox12;Gm21988;Gm21988;Rnasek;Rnasek;Rnasek,-687;0;0;0;0;0;0;0;0;0;0;0;0;0;18421;0;0;2848;2910;2126,TRUE,FALSE,TRUE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,9,104457,ENSMUSG00000020831,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20208,cg15776582,0.0000499,0.00000518,9.628881927,2.27E-19,gain,yes,-0.00000442,0.00000881,-0.501628011,0.616285268,neg,ns,0.007557676,0.00258044,2.928832135,0.003654622,pos,ns,2.43715748,-0.000054,0.0000887,-0.60855569,0.543264625,neg,ns,0.024410126,Unc79,Unc79_fiveUTR,12,102949365,102949414,102949413,102949414,50,-,TCCGGGACCGAATTCTGCAATTTGATGTGCGTTTTGTCCGAATGGTAGCG,Promoter (<=1kb),12,102948859,103184001,235143,1,Unc79-202,506,Unc79-202;Unc79-208,Unc79;Unc79,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,12,24,217843,ENSMUSG00000021198,conserved gene and region,12,102948810,102949512,703,*,703,59,0.644381223,0.809149434,0.083926031,2.91E-40,CpGisland,TRUE,NA,NRS
13515,cg00784442,-0.0000485,0.0000195,-2.488096655,0.013367888,loss,ns,-0.0000166,0.0000331,-0.501395549,0.616448638,neg,ns,-0.009149663,0.009695807,-0.943672133,0.346072089,neg,ns,0.460833426,-0.000689866,0.000333438,-2.068947258,0.039379629,neg,ns,0.074240559,Arid4a,Arid4a_fiveUTR,12,71015985,71016034,71016033,71016034,50,-,AGCGAGTCTGCTCAACAGCTTGTTATTTGGTGGATTGTGGCAGTAAATCG,Promoter (<=1kb),12,71015990,71098592,82603,1,Arid4a-201,0,Arid4a-201;Arid4a-203;Arid4a-202,Arid4a;Arid4a;Arid4a,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,9,238247,ENSMUSG00000048118,conserved gene and region,12,71016033,71017045,1013,*,1013,128,0.761105627,0.881300636,0.126357354,2.14E-111,CpGisland,TRUE,U1,Pr-A
24177,cg12046643,0.0000837,0.0000137,6.109301665,0.000000003,gain,yes,0.0000117,0.0000233,0.501371157,0.616465781,pos,ns,0.044964115,0.006822804,6.590268785,1.89E-10,pos,ns,9.724546279,-0.000761514,0.000234636,-3.245517859,0.001300556,neg,ns,0.740803155,Tnrc6a,Tnrc6a_Exon,7,123179783,123179832,123179783,123179784,50,-,CGGTCGGGAAAGGCCCTGGTTCTCGGCCTCAGATTTCCAAAGAGTCTTCC,"Exon (Tnrc6a-201/Tnrc6a, exon 12 of 24)",7,123124177,123193987,69811,1,Tnrc6a-203,55606,Tnrc6a-203;Tnrc6a-201;Tnrc6a-210;Tnrc6a-205;Tnrc6a-202;Tnrc6a-207;Tnrc6a-208,Tnrc6a;Tnrc6a;Tnrc6a;Tnrc6a;Tnrc6a;Tnrc6a;Tnrc6a,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,17,24,233833,ENSMUSG00000052707,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23817,cg09743178,-0.000000834,0.00000929,-0.089823401,0.928485558,loss,ns,0.00000791,0.0000158,0.501361555,0.616472529,pos,ns,-0.001041361,0.004623448,-0.225234603,0.821945176,neg,ns,0.085157149,-0.0000992,0.000159,-0.62414134,0.532993796,neg,ns,0.704258073,Sdsl,Sdsl_Intergenic_downstream,5,120454641,120454690,120454641,120454642,50,+,CGCTCCCAGGAAACACCTTTTTACATAAGATATTGCCCACGCTGGAGTGG,Distal Intergenic,5,120460688,120467360,6673,2,Sdsl-203,12670,Sdsl-202;Sdsl-201,Sdsl;Sdsl,18073;18120,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,257635,ENSMUSG00000029596,conserved gene and region,5,120454521,120454684,164,*,164,10,0.506097561,0.963572268,0.06097561,0.00000612,CpGisland,TRUE,U13,Hc-P
4744,cg08485777,-0.0000257,0.0000121,-2.119075234,0.034878957,loss,ns,-0.0000103,0.0000206,-0.501273622,0.616534333,neg,ns,-0.012363475,0.006030928,-2.050011935,0.041204179,neg,ns,1.385058734,-0.0000266,0.000207403,-0.128129488,0.89812958,neg,ns,0.829207296,Mecom,Mecom_Intron,3,30412060,30412109,30412108,30412109,50,-,CAAGCAAATGGTAATTTCACTTTTTGTGACGGTACTTTAGAGCAAAACCG,"Intron (Mecom-212/Mecom, intron 1 of 15)",3,29951299,30509733,558435,2,Mecom-212,97624,Mecom-212;Mecom-213;Mecom-207;Mecom-208;Mecom-211;Mecom-209,Mecom;Mecom;Mecom;Mecom;Mecom;Mecom,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,80,14013,ENSMUSG00000027684,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20987,cg12501063,-0.00000112,0.00000121,-0.930069553,0.353058756,loss,ns,0.00000103,0.00000205,0.501248281,0.616552144,pos,ns,-0.001054619,0.000600595,-1.75595688,0.080083286,neg,ns,1.096458115,0.0000202,0.0000207,0.979722199,0.327987224,pos,ns,0.981174312,Tanc2,Tanc2_Exon,11,105914019,105914068,105914067,105914068,50,+,TTGTTTTCTCCTTTCTTTGAAGGTTGTCAGACGTTACCGAGTCGCCCACG,"Exon (Tanc2-204/Tanc2, exon 8 of 12)",11,105589991,105929304,339314,1,Tanc2-202,324028,Tanc2-202;Tanc2-204;Tanc2-201;Tanc2-205,Tanc2;Tanc2;Tanc2;Tanc2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,15,20,77097,ENSMUSG00000053580,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
563,cg21743335,-0.0000103,0.00000204,-5.05399026,0.000000741,loss,yes,0.00000173,0.00000346,0.501230204,0.61656485,pos,ns,-0.00035029,0.001013113,-0.345755769,0.729760787,neg,ns,0.136819477,-0.0000131,0.0000348,-0.377308319,0.706202662,neg,ns,0.961556801,Tox,Tox_Intron,4,6873907,6873956,6873955,6873956,50,-,CTGAACAATTAGGTACAAAGTGGCTATCTTGTCAGACAACTTATTAGCCG,"Intron (Tox-201/Tox, intron 1 of 8)",4,6686353,6990799,304447,2,Tox-201,116843,Tox-201;Tox-203;Tox-204,Tox;Tox;Tox,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,15,252838,ENSMUSG00000041272,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12201,cg08979438,-0.000000979,0.000000681,-1.438310598,0.151354714,loss,ns,0.00000058,0.00000116,0.501103106,0.616654188,pos,ns,0.000421223,0.000338918,1.24284618,0.214863749,pos,ns,0.667836851,-0.00000687,0.0000117,-0.589757614,0.555782757,neg,ns,0.974316745,Map2k5,Map2k5_Exon,9,63339052,63339101,63339100,63339101,50,+,TTTACTGAAACAATTATTGAAATTCGTACCTTCAGGCCATGTATGTTCCG,"Exon (Map2k5-201/Map2k5, exon 5 of 22)",9,63163768,63377902,214135,2,Map2k5-201,38801,Map2k5-201;Map2k5-203,Map2k5;Map2k5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,37,23938,ENSMUSG00000058444,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22506,cg07464681,-0.00000241,0.000002,-1.206253205,0.228639646,loss,ns,-0.0000017,0.0000034,-0.501037526,0.616700287,neg,ns,-0.00131191,0.000995889,-1.317325511,0.188702359,neg,ns,0.72422267,0.0000165,0.0000342,0.481857573,0.630247129,pos,ns,0.954756609,Rps4l-ps,Rps4l-ps_Intergenic_downstream,7,114896972,114897021,114897020,114897021,50,+,CAGTTGCTCTGAAAAATCAAGCCCTCACAGTTCTCGCTGGGGAGGCAGCG,Distal Intergenic,7,114926959,114927726,768,2,Rps4l-ps-201,30705,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,13,19,627967,NA,mapped to different genes,7,114896968,114897083,116,*,116,9,0.50862069,1.202764977,0.077586207,0.00000318,CpGisland,TRUE,U15,NS
7009,cg10893298,-0.0000202,0.0000104,-1.954071552,0.051591673,loss,ns,-0.00000881,0.0000176,-0.500974625,0.616744503,neg,ns,-0.01059627,0.005153146,-2.05627194,0.04059318,neg,ns,1.39154693,0.000108185,0.000177216,0.610470767,0.541997287,pos,ns,0.82734968,Gm7382,Gm7382_Promoter,15,40533955,40534004,40534003,40534004,50,-,GCAATCGCAGCCATCTAAGGCGGGAAGGCAGGCAGAGCAAATTGAAAGCG,Promoter (3-4kb),15,40537321,40538425,1105,1,Gm7382-201,-3366,Gm7382-201,Gm7382,-3317,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,17,22,664872,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15258,cg10084202,-0.0000122,0.0000038,-3.201849556,0.001507226,loss,ns,0.00000323,0.00000645,0.50093579,0.616771804,pos,ns,-0.004053708,0.00189017,-2.144626847,0.032759792,neg,ns,1.484658859,0.0000498,0.000065,0.766741881,0.443818502,pos,ns,0.051267738,Zfp710,Zfp710_fiveUTR,7,80026179,80026228,80026227,80026228,50,+,CTCTTCCTCTGCGAGCTGGCTTAGGAGGAGCTGTTTTGCATCCCTTCACG,5' UTR,7,80024814,80094173,69360,1,Zfp710-202,1365,Zfp710-202;Zfp710-203;Zfp710-201;Zfp710-204;Zfp710-205,Zfp710;Zfp710;Zfp710;Zfp710;Zfp710,0;0;0;0;-1586,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,3,209225,ENSMUSG00000048897,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
25324,cg19724760,0.00000273,0.00000594,0.459355175,0.646301079,gain,ns,0.00000506,0.0000101,0.500841546,0.616838057,pos,ns,-0.003894617,0.002956967,-1.317098316,0.188778404,neg,ns,0.724047691,0.000166502,0.00010169,1.637347297,0.102572581,pos,ns,0.895545867,Runx3,Runx3_Intergenic_upstream,4,135038478,135038527,135038478,135038479,50,+,CGAGGTGCCTGCTTTATTGGGCCTCCAGTCACCGATGATACATTTGCTCC,Distal Intergenic,4,135120652,135177990,57339,1,Runx3-201,-82125,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,6,12399,ENSMUSG00000070691,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12373,cg22660049,0.00000395,0.00000242,1.636191021,0.102814429,gain,ns,-0.00000205,0.0000041,-0.500804652,0.616863995,neg,ns,-0.001689015,0.001202033,-1.405131702,0.160983418,neg,ns,0.793218855,-0.0000461,0.0000413,-1.115878036,0.26533857,neg,ns,0.936136426,Klf7,Klf7_Intron,1,64066863,64066912,64066863,64066864,50,+,CGCAGGTGCCAGACATTGTGTAGAATTTGCACTTATGCTCCATTAATTGC,"Intron (Klf7-202/Klf7, intron 2 of 3)",1,64029447,64121491,92045,2,Klf7-202,54579,Klf7-202;Klf7-201,Klf7;Klf7,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,21,93691,ENSMUSG00000025959,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13184,cg22238102,0.0000228,0.00000454,5.027810456,0.000000841,gain,yes,0.00000386,0.00000771,0.500633367,0.616984419,pos,ns,-0.001059638,0.002257369,-0.469412831,0.639104566,neg,ns,0.194428079,-0.0000512,0.0000776,-0.659501262,0.510063565,neg,ns,0.905604755,Tcf4,Tcf4_Intron,18,69675353,69675402,69675353,69675354,50,-,CGCTCCACTGCAGCACCCTGGGAGGCAATTTGACGTTTTACCTGCCTGAG,"Intron (Tcf4-201/Tcf4, intron 16 of 20)",18,69344146,69684343,340198,1,Tcf4-201,331207,Tcf4-201;Tcf4-207;Tcf4-240;Tcf4-254;Tcf4-246;Tcf4-206;Tcf4-202;Tcf4-257;Tcf4-248;Tcf4-205;Tcf4-253;Tcf4-238;Tcf4-249;Tcf4-250;Tcf4-226;Tcf4-230;Tcf4-234;Tcf4-258;Tcf4-252;Tcf4-243;Tcf4-204;Tcf4-222;Tcf4-255;Tcf4-203;Tcf4-251;Tcf4-214,Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,42,66,21413,ENSMUSG00000053477,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23767,cg05033071,0.0000386,0.00000463,8.331650433,2.61E-15,gain,yes,-0.00000394,0.00000787,-0.500494585,0.617081998,neg,ns,0.007711307,0.002305232,3.345132364,0.000923482,pos,ns,3.034571522,-0.000133418,0.0000793,-1.682941497,0.093393212,neg,ns,0.115247188,Foxo6,Foxo6_Exon,4,120286859,120286908,120286907,120286908,50,-,TGCTGTCGCCTTTATCCTTGAAGTAGGGCACGTAACGGACCATCCAGTCG,Promoter (<=1kb),4,120267079,120287349,20271,2,Foxo6-201,441,Foxo6-201,Foxo6,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,42,329934,ENSMUSG00000052135,conserved gene and region,4,120286820,120288190,1371,*,1371,160,0.728665208,0.879452187,0.116703136,1.00E-132,CpGisland,TRUE,U3,Pr-B
15335,cg24143066,-0.000000423,0.00000417,-0.101510481,0.919210863,loss,ns,-0.00000354,0.00000708,-0.50047533,0.617095538,neg,ns,-0.004214358,0.002074429,-2.031574874,0.043049369,neg,ns,1.366033212,0.00000387,0.0000713,0.054261729,0.956761592,pos,ns,0.909525528,Cacna1i,Cacna1i_Exon,15,80389695,80389744,80389695,80389696,50,+,CGCCTAGGAGAACCTGTGGCTGGACAGCGTCTCTTTAATCATCAAGGACT,"Exon (Cacna1i-202/Cacna1i, exon 33 of 37)",15,80287238,80398279,111042,1,Cacna1i-202,102457,Cacna1i-202;Cacna1i-205;Cacna1i-203;Cacna1i-204;Cacna1i-206;Cacna1i-201,Cacna1i;Cacna1i;Cacna1i;Cacna1i;Cacna1i;Cacna1i,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,11,239556,ENSMUSG00000022416,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21929,cg27429589,-0.00000656,0.00000233,-2.813440733,0.00521448,loss,ns,0.00000198,0.00000396,0.50039313,0.617153337,pos,ns,-0.000127341,0.001160935,-0.10968841,0.912727464,neg,ns,0.039658882,-0.0000355,0.0000399,-0.890139458,0.374081281,neg,ns,0.9543917,Gm9661,Gm9661_Exon,12,109739125,109739174,109739125,109739126,50,+,CGAATGGAGGTTGTCCATGGTGTGTTCATTTTATTTATGATGAGTATTAC,"Exon (Mir496a-201/Mir496a-201, exon 1 of 1)",12,109827003,109828124,1122,1,Gm9661-201,-87829,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,8,675987,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13597,cg02993437,0.00000503,0.00000149,3.385558302,0.000801781,gain,ns,-0.00000126,0.00000253,-0.500386768,0.617157811,neg,ns,0.002147203,0.000740117,2.901168797,0.003983783,pos,ns,2.399704339,-0.0000145,0.0000255,-0.569268045,0.569586482,neg,ns,0.955502472,Metap1d,Metap1d_Intron,2,71517906,71517955,71517954,71517955,50,+,GTTCCCTTTTTTTGTGTACGACTTAACTCTTTACAAAAAAGAGCCACACG,"Intron (Metap1d-201/Metap1d, intron 6 of 9)",2,71453276,71525191,71916,1,Metap1d-201,64630,Metap1d-201;Metap1d-202;Metap1d-205;Metap1d-203;Metap1d-204;Metap1d-206,Metap1d;Metap1d;Metap1d;Metap1d;Metap1d;Metap1d,0;0;0;0;0;2494,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,5,66559,ENSMUSG00000041921,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3123,cg21371528,-0.000210944,0.0000231,-9.13091057,9.00E-18,loss,yes,-0.0000196,0.0000392,-0.500374521,0.617166423,neg,ns,0.071418683,0.011498194,6.211295706,1.69E-09,pos,ns,8.772525478,-0.002834241,0.000395422,-7.16763826,5.61E-12,neg,yes,0.488566034,Kat6a,Kat6a_Exon,8,22862409,22862458,22862457,22862458,50,-,TCCTATAAAGATCCTGATAATCCTGGGCGAATAGCACTTCCTAAGCCTCG,"Exon (Kat6a-202/Kat6a, exon 2 of 17)",8,22859535,22943259,83725,1,Kat6a-202,2874,Kat6a-202;Kat6a-204;Kat6a-201,Kat6a;Kat6a;Kat6a,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,6,244349,ENSMUSG00000031540,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22382,cg11073231,8.71E-08,0.00000298,0.029242854,0.97668972,gain,ns,0.00000253,0.00000506,0.500224639,0.617271821,pos,ns,0.001184705,0.001483075,0.798816416,0.425008445,pos,ns,0.37160244,-0.0000183,0.000051,-0.358640175,0.720108407,neg,ns,0.805243444,Sdk2,Sdk2_Intron,11,113877710,113877759,113877710,113877711,50,+,CGATCGGATTGAAAGCTGCTGATATAGCTGAATCCATAAAAGTGTGCTCT,"Intron (Sdk2-201/Sdk2, intron 5 of 44)",11,113776374,114066218,289845,2,Sdk2-201,188459,Sdk2-201;Sdk2-203;Sdk2-205,Sdk2;Sdk2;Sdk2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,11,237979,ENSMUSG00000041592,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7164,cg23535950,-0.00000267,0.00000229,-1.164304521,0.245195877,loss,ns,-0.00000195,0.0000039,-0.500221944,0.617273717,neg,ns,0.002708665,0.001142141,2.371567709,0.018323517,pos,ns,1.736991169,-0.0000906,0.0000393,-2.305586584,0.021793629,neg,ns,0.949020764,Lcor,Lcor_fiveUTR,19,41552457,41552506,41552505,41552506,50,+,TGGGTCTCCGACCCCAATATTCCCCTAGTGGCCCGTGAGATCATGCAGCG,5' UTR,19,41482637,41562261,79625,1,Lcor-201,69820,Lcor-201;Lcor-204;Lcor-206;Lcor-202;Lcor-205,Lcor;Lcor;Lcor;Lcor;Lcor,0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,25,212391,ENSMUSG00000025019,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13995,cg04486857,0.000017,0.00000774,2.194174867,0.028964672,gain,ns,0.00000657,0.0000131,0.500091838,0.617365215,pos,ns,0.002797663,0.003850304,0.726608334,0.468014214,pos,ns,0.329740957,0.000193702,0.000132412,1.462879095,0.144513572,pos,ns,0.196635985,Gm13668,Gm13668_Intergenic_upstream,2,74129119,74129168,74129119,74129120,50,-,CGAAGCTGGTGTTAAATGATATGGGAAGTGACACTTTACATACCCAGTTA,Distal Intergenic,2,73959669,73960669,1001,2,Gm13668-201,-168499,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,18,20,667729,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24732,cg05820392,-0.000024,0.0000127,-1.893649593,0.059202465,loss,ns,0.0000108,0.0000215,0.499868862,0.617522039,pos,ns,0.00740363,0.006303712,1.174487327,0.241101298,pos,ns,0.617800451,0.000393342,0.000216784,1.814442875,0.070576076,pos,ns,0.296292491,Tspan9,Tspan9_fiveUTR,6,128034237,128034286,128034285,128034286,50,-,TCTTAAATTCTAGGAGGAACACAAAGGACAGGTCCAGGTAAAACACCACG,5' UTR,6,127961396,128143563,182168,2,Tspan9-203,109277,Tspan9-203;Tspan9-202;Tspan9-201;Tspan9-204;Tspan9-211;Tspan9-209;Tspan9-208;Tspan9-207;Tspan9-206,Tspan9;Tspan9;Tspan9;Tspan9;Tspan9;Tspan9;Tspan9;Tspan9;Tspan9,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,8,109246,ENSMUSG00000030352,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
21124,cg06530207,0.0000508,0.0000108,4.684900207,0.0000042,gain,ns,0.00000921,0.0000184,0.499673059,0.617659765,pos,ns,0.005229283,0.005399248,0.968520514,0.333539492,pos,ns,0.476852738,-0.00000166,0.00018568,-0.008919528,0.992889078,neg,ns,0.123580489,Gm3191,Gm3191_Intergenic_downstream,12,106479602,106479651,106479602,106479603,50,+,CGCGCACCGTAATGGAATTTGCATCTAATGCATACATAAATCAAACATCT,Distal Intergenic,12,106459150,106459495,346,1,Gm3191-201,20452,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,11,13,100041191,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17744,cg00995852,0.00000918,0.00000514,1.786882469,0.074933481,gain,ns,-0.00000436,0.00000873,-0.499519693,0.617767652,neg,ns,0.000420271,0.002556511,0.164392613,0.869529214,pos,ns,0.060715822,-0.0000773,0.0000879,-0.879283773,0.379928494,neg,ns,0.892619161,Fto,Fto_Intron,8,91612162,91612211,91612210,91612211,50,-,GAGAAACATCTAATATAAATCTGTAATGTGCACTGATGACAAACTACACG,"Intron (Fto-201/Fto, intron 8 of 8)",8,91313525,91668439,354915,1,Fto-201,298637,Fto-201;Fto-205,Fto;Fto,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,26,26383,ENSMUSG00000055932,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23847,cg11563156,0.00000948,0.00000119,7.977861084,2.91E-14,gain,yes,-0.00000101,0.00000202,-0.499378185,0.617867204,neg,ns,0.00084265,0.000591435,1.424755108,0.155233942,pos,ns,0.809013314,0.0000335,0.0000203,1.648253846,0.10031367,pos,ns,0.017051117,En1,En1_Promoter,1,120600342,120600391,120600390,120600391,50,-,TTATCTTCCGCAGCCCTTCTCGAGGCGTCTCCTGCAGGCGAGATAAGGCG,Promoter (2-3kb),1,120602418,120607992,5575,1,En1-201,-2076,En1-201,En1,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,23,36,13798,ENSMUSG00000058665,conserved gene and region,1,120600297,120600444,148,*,148,15,0.540540541,1.38836773,0.101351351,7.56E-12,CpGisland,TRUE,U13,Hc-P
21030,cg16643213,-0.00000264,0.00000146,-1.804010428,0.072200269,loss,ns,0.00000124,0.00000249,0.499307352,0.617917038,pos,ns,0.000287951,0.000728498,0.395266965,0.692917727,pos,ns,0.159318328,-0.0000592,0.0000251,-2.362065573,0.018791219,neg,ns,0.963848523,Vrk1,Vrk1_Intergenic_downstream,12,106129340,106129389,106129340,106129341,50,-,CGATAATTAAGTCTTTGTTTATCAAAAAACAAGTTATATTAGGAGCAGAA,Distal Intergenic,12,106030717,106075409,44693,1,Vrk1-204,98672,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,29,37,22367,ENSMUSG00000021115,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11528,cg07346343,0.0000312,0.00000643,4.856171751,0.0000019,gain,ns,0.00000545,0.0000109,0.499207696,0.617987154,pos,ns,0.009053337,0.003198626,2.830383014,0.004952818,pos,ns,2.305147613,-0.000238721,0.00011,-2.170179814,0.030752263,neg,ns,0.074202319,Med12l,Med12l_fiveUTR,3,59006984,59007033,59006984,59006985,50,+,CGGTTAACATGAGAGATCATGGCCGCCTTCGGGCTTCTCAGCTATGAGCA,5' UTR,3,59005825,59094888,89064,1,Med12l-203,1159,Med12l-203;Med12l-206;Med12l-201;Med12l-202;Med12l-204,Med12l;Med12l;Med12l;Med12l;Med12l,0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,9,329650,ENSMUSG00000056476,conserved gene and region,3,59006944,59007530,587,*,587,59,0.63713799,0.990646453,0.100511073,3.98E-45,CpGisland,TRUE,U3,Pr-B
14192,cg17151979,0.0000753,0.0000116,6.50221915,3.16E-10,gain,yes,0.00000982,0.0000197,0.499088694,0.618070886,pos,ns,0.013572205,0.005765631,2.353984165,0.019197216,pos,ns,1.716761753,-0.000199736,0.00019828,-1.00734565,0.314554325,neg,ns,0.214433748,Gm28230,Gm28230_Intron,2,74736785,74736834,74736833,74736834,50,-,ATTTTGTGTAATCTGTGATCTTGATTATTGCCAATTGGTGAGGCAGCCCG,"Intron (Hoxd3-203/Hoxd3, intron 1 of 2)",2,74726728,74747918,21191,1,Gm28230-201,10057,Gm28230-201;Hoxd3-203;Hoxd3-205;Hoxd3-202;Hoxd3-201,Gm28230;Hoxd3;Hoxd3;Hoxd3;Hoxd3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,23,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
15358,cg01104009,0.00000412,0.00000259,1.589424099,0.112983978,gain,ns,0.0000022,0.0000044,0.498935214,0.618178884,pos,ns,-0.000613213,0.001289862,-0.47540956,0.634829886,neg,ns,0.197342636,0.00000468,0.0000444,0.105509605,0.916039686,pos,ns,0.923862961,Exd2,Exd2_Exon,12,80496848,80496897,80496848,80496849,50,+,CGCTCCCTCATGCAGCTGGAGAGCCGCTGGCGTCAGCACTTCCTGGACTC,"Exon (Exd2-201/Exd2, exon 9 of 9)",12,80463095,80498122,35028,1,Exd2-201,33753,Exd2-201;Exd2-207;Exd2-206,Exd2;Exd2;Exd2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,97827,ENSMUSG00000032705,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17750,cg04193285,0.000000678,0.00000106,0.639471334,0.522988616,gain,ns,-0.000000898,0.0000018,-0.498925623,0.618185633,neg,ns,-0.00015105,0.000527582,-0.286306546,0.774834585,neg,ns,0.110791003,-0.00000302,0.0000181,-0.166308186,0.868022841,neg,ns,0.978844881,Fto,Fto_Intron,8,91624181,91624230,91624229,91624230,50,+,AGATAACCATTTTCATCTCTTGTTGAAGCATTGAGATTTATTGGCTTTCG,"Intron (Fto-201/Fto, intron 8 of 8)",8,91313525,91668439,354915,1,Fto-201,310656,Fto-201;Fto-205,Fto;Fto,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,26,26383,ENSMUSG00000055932,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18970,cg00401116,-0.00000118,0.00000336,-0.351436344,0.725499762,loss,ns,-0.00000285,0.00000571,-0.498899146,0.618204265,neg,ns,0.000711638,0.001672971,0.425373834,0.670859314,pos,ns,0.173368546,0.0000414,0.0000575,0.718739072,0.472843094,pos,ns,0.937439095,Nfia,Nfia_Exon,4,98081775,98081824,98081823,98081824,50,-,CCACGGGATCCAAGCTTTGTAAATATCCCTCAACAGACACAGGTGGGCCG,"Exon (Nfia-202/Nfia, exon 10 of 11)",4,97777608,98118871,341264,1,Nfia-202,304167,Nfia-202;Nfia-203;Nfia-205;Nfia-201;Nfia-204,Nfia;Nfia;Nfia;Nfia;Nfia,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,44,18027,ENSMUSG00000028565,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23638,cg07899808,-0.00000224,0.00000289,-0.773445756,0.439848,loss,ns,-0.00000245,0.00000492,-0.498843181,0.618243648,neg,ns,-0.000731527,0.001440613,-0.5077889,0.611962489,neg,ns,0.213275198,0.0000342,0.0000495,0.691221786,0.489943465,pos,ns,0.950570139,Inhbb,Inhbb_threeUTR,1,119415907,119415956,119415955,119415956,50,-,CTGACTAATCATGCAACTAAATCAGTGCAAACATTAAAAGCAATCATTCG,3' UTR,1,119415465,119422248,6784,2,Inhbb-201,6292,Inhbb-201,Inhbb,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,2,16324,ENSMUSG00000037035,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14605,cg02533269,0.00009,0.0000109,8.258804983,4.31E-15,gain,yes,-0.00000923,0.0000185,-0.498733008,0.618321181,neg,ns,0.013207027,0.005420869,2.436330241,0.01539989,pos,ns,1.812482388,-0.000316446,0.000186423,-1.697461454,0.090613057,neg,ns,0.413573521,Mctp1,Mctp1_Intron,13,76810803,76810852,76810803,76810804,50,+,CGCATGGGGACTTGTTTAAATTGGAAACCAGAGAGGAGTCAAGGAACAAG,"Intron (Mctp1-204/Mctp1, intron 10 of 20)",13,76384535,77031810,647276,1,Mctp1-204,426268,Mctp1-204;Mctp1-201;Mctp1-206,Mctp1;Mctp1;Mctp1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,20,78771,ENSMUSG00000021596,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13853,cg02975891,-0.000000173,0.000000406,-0.426222915,0.670241221,loss,ns,0.000000344,0.000000689,0.498719174,0.618330918,pos,ns,0.000502965,0.000201904,2.491115995,0.01325708,pos,ns,1.877552138,-0.0000158,0.00000694,-2.273603074,0.02367351,neg,ns,0.010689322,Six4,Six4_Exon,12,73112469,73112518,73112469,73112470,50,-,CGATTCTGCTTGTAGAGCTCCTTGAGCGCGTTGCGCGACTTCTCCTTGAA,Promoter (<=1kb),12,73099609,73113425,13817,2,Six4-201,907,Six4-201;Six4-202,Six4;Six4,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,8,20474,ENSMUSG00000034460,conserved gene and region,12,73112336,73112699,364,*,364,37,0.648351648,0.970666667,0.101648352,1.06E-28,CpGisland,TRUE,U3,Pr-B
13085,cg20778358,-0.0000133,0.00000338,-3.94063899,0.000100467,loss,ns,0.00000286,0.00000574,0.498704859,0.618340992,pos,ns,0.000188174,0.001683035,0.111806628,0.91104909,pos,ns,0.040458221,0.00000872,0.0000579,0.150706623,0.880305164,pos,ns,0.962601864,Rora,Rora_Exon,9,69378839,69378888,69378887,69378888,50,-,CATACAGAAAAGCTAATGGCATTTAAAGCAATATACCCAGACATTGTGCG,"Exon (Rora-201/Rora, exon 11 of 11)",9,68653786,69388246,734461,1,Rora-201,725053,Rora-201;Rora-202,Rora;Rora,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,19,19883,ENSMUSG00000032238,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4822,cg02386933,-0.00000591,0.00000673,-0.878695912,0.380246738,loss,ns,-0.0000057,0.0000114,-0.498601995,0.618413386,neg,ns,-0.002011026,0.003349075,-0.600471885,0.548630521,neg,ns,0.260720036,-0.000083,0.000115174,-0.7202936,0.471886997,neg,ns,0.768829793,Ctnnd2,Ctnnd2_Exon,15,30847346,30847395,30847394,30847395,50,+,TCAGGATGATCGGAAAATACAGCTGCATTCATCACAGGTGCTGCGTAACG,"Exon (Ctnnd2-201/Ctnnd2, exon 12 of 23)",15,30172593,31029341,856749,1,Ctnnd2-201,674753,Ctnnd2-201;Ctnnd2-203,Ctnnd2;Ctnnd2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,10,18163,ENSMUSG00000022240,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15616,cg18129701,-0.0000042,0.00000212,-1.981779753,0.048386893,loss,ns,-0.00000179,0.0000036,-0.498592853,0.618419821,neg,ns,0.001317623,0.001054107,1.24999024,0.212245919,pos,ns,0.673160652,-0.0000792,0.0000363,-2.184616728,0.029665671,neg,ns,0.960323714,Nfib,Nfib_threeUTR,4,82296277,82296326,82296325,82296326,50,+,CGCCTCCTAGCCTTCGTTGGTGAGATAACCAGGAATAGTGATTCCATGCG,3' UTR,4,82290173,82505308,215136,2,Nfib-201,208982,Nfib-201;Nfib-203;Nfib-202;Nfib-205;Nfib-206;Nfib-204,Nfib;Nfib;Nfib;Nfib;Nfib;Nfib,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,11,66,18028,ENSMUSG00000008575,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27914,cg26023682,0.0000738,0.0000234,3.147305394,0.001808025,gain,ns,-0.0000199,0.0000398,-0.498570654,0.618435445,neg,ns,0.028163673,0.011665666,2.414236124,0.01634729,pos,ns,1.786554234,-0.000521825,0.000401181,-1.300722155,0.194319634,neg,ns,0.529620828,Prox1,Prox1_Intron,1,190163613,190163662,190163613,190163614,50,+,CGTTTGCTTAACAGAGCACATCTTCACAATAACAGGGTCCATTGCCAAAG,"Intron (Prox1-202/Prox1, intron 1 of 4)",1,190118035,190170714,52680,2,Prox1-202,7052,Prox1-202;Prox1-201;Prox1-203,Prox1;Prox1;Prox1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,59,19130,ENSMUSG00000010175,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4011,cg17268955,0.000014,0.0000164,0.855790774,0.392774492,gain,ns,0.0000139,0.0000279,0.498321694,0.618610678,pos,ns,0.020869741,0.008163247,2.5565489,0.011047944,pos,ns,1.956718531,-0.000769588,0.000280733,-2.741349242,0.006473951,neg,ns,0.655436169,Gm50479,Gm50479_Intergenic_downstream,8,26438487,26438536,26438487,26438488,50,+,CGCTGTCCTGTGGCCAGGTTTGCCTCTCATTTGTCAATGTTATTATTGAA,Distal Intergenic,8,26237222,26237407,186,1,Gm50479-201,201265,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,21,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16579,cg26575201,-0.00000902,0.00000453,-1.990310028,0.047434745,loss,ns,0.00000384,0.0000077,0.498301054,0.618625207,pos,ns,-0.000727121,0.002256274,-0.322266308,0.747468177,neg,ns,0.126407293,-0.0000281,0.0000776,-0.362068244,0.71754772,neg,ns,0.93140406,Gm5231,Gm5231_Intergenic_downstream,17,85528688,85528737,85528736,85528737,50,-,GAAATTGCACTCATTACATACAACACAATTAGTTGCCACTAGCCTGGCCG,Distal Intergenic,17,85541625,85542703,1079,2,Gm5231-201,14015,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,11,383282,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25407,cg10541043,-0.000000735,0.000000899,-0.817411767,0.414320934,loss,ns,0.000000761,0.00000153,0.498287788,0.618634545,pos,ns,0.000427323,0.000447326,0.955282974,0.340178946,pos,ns,0.468292569,0.00000382,0.0000154,0.248536735,0.803883718,pos,ns,0.976416814,Cux1,Cux1_threeUTR,5,136274551,136274600,136274599,136274600,50,-,TTTGTTTTCTATATGCACCTTGGCCTATGGCGATTTTGCCCTGTGGCCCG,3' UTR,5,136248135,136360018,111884,2,Cux1-205,85418,Cux1-205;Cux1-207;Cux1-211;Cux1-203;Cux1-213;Cux1-201;Cux1-204;Cux1-209;Cux1-212;Cux1-206;Cux1-202,Cux1;Cux1;Cux1;Cux1;Cux1;Cux1;Cux1;Cux1;Cux1;Cux1;Cux1,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,8,21,13047,ENSMUSG00000029705,conserved gene and region,5,136274581,136275256,676,*,676,67,0.721893491,0.760800914,0.099112426,1.01E-50,CpGisland,TRUE,U10,Tr-S
18431,cg22607375,0.0000283,0.000009,3.148422572,0.001801344,gain,ns,0.00000761,0.0000153,0.498281527,0.618638952,pos,ns,0.001525019,0.004477154,0.340622358,0.733618612,pos,ns,0.134529659,-0.000161493,0.000153969,-1.048869449,0.295055232,neg,ns,0.739933404,St8sia4,St8sia4_Exon,1,95627547,95627596,95627595,95627596,50,-,TTCGCACTTTCAGTTTATTCTTAAGGATTAATGCATTAACCCACTCCACG,"Exon (St8sia4-201/St8sia4, exon 4 of 5)",1,95587682,95667571,79890,2,St8sia4-201,39975,St8sia4-201;St8sia4-204,St8sia4;St8sia4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,20452,ENSMUSG00000040710,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26811,cg04810484,-0.0000328,0.00000846,-3.870887713,0.000132251,loss,ns,0.00000716,0.0000144,0.498273883,0.618644333,pos,ns,-0.007700775,0.004211343,-1.828579451,0.068423366,neg,ns,1.164795564,0.0000102,0.000144828,0.070715054,0.943670136,pos,ns,0.881212553,Zzz3,Zzz3_Exon,3,152427820,152427869,152427820,152427821,50,+,CGATGTCTTATACTGGATGATTGTGAGAAAAGGGAAATTAAAAAGGTGAA,"Exon (Zzz3-206/Zzz3, exon 4 of 4)",3,152395473,152459474,64002,1,Zzz3-204,32347,Zzz3-204;Zzz3-206;Zzz3-202;Zzz3-207;Zzz3-208;Zzz3-210;Zzz3-201;Zzz3-203,Zzz3;Zzz3;Zzz3;Zzz3;Zzz3;Zzz3;Zzz3;Zzz3,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,7,108946,ENSMUSG00000039068,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17314,cg05982549,-0.0000213,0.0000108,-1.972942433,0.049390275,loss,ns,0.00000912,0.0000183,0.498230283,0.618675024,pos,ns,-0.000545619,0.005364095,-0.101716838,0.919047196,neg,ns,0.036662186,-0.000297982,0.000184471,-1.615335561,0.107255304,neg,ns,0.811031914,Vcan,Vcan_Exon,13,89657625,89657674,89657625,89657626,50,+,CGAGGTTTCATCTTTCCAAAGGTCTTGGCATTTTCTACAACAGGGGGCTG,"Exon (Vcan-203/Vcan, exon 14 of 15)",13,89655312,89742509,87198,2,Vcan-203,84835,Vcan-203;Vcan-206;Vcan-202;Vcan-208;Vcan-201;Vcan-204,Vcan;Vcan;Vcan;Vcan;Vcan;Vcan,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,6,13003,ENSMUSG00000021614,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
335,cg15218912,0.0000212,0.0000033,6.432417942,4.75E-10,gain,yes,0.00000279,0.00000561,0.498210375,0.618689039,pos,ns,0.005812538,0.001643466,3.536756339,0.000466964,pos,ns,3.33071693,-0.000210595,0.0000565,-3.726109741,0.000231037,neg,ns,0.086903877,Zfhx4,Zfhx4_Promoter,3,5210402,5210451,5210402,5210403,50,-,CGGGTTGCCATGGTGTTGACTTCTTGCCTCTGAGGAGCTGCCCAATGACT,Promoter (8-9kb),3,5218526,5413165,194640,1,Zfhx4-203,-8124,NA,NA,NA,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,10,77,80892,ENSMUSG00000025255,mapped to different genes,3,5210231,5210403,173,*,173,10,0.554913295,0.752173913,0.057803468,0.00000971,CpGisland,TRUE,NA,NRS
24528,cg00217702,0.000000954,0.0000027,0.353070067,0.724275871,gain,ns,0.00000229,0.00000459,0.498088728,0.618774674,pos,ns,0.001812221,0.001344252,1.348125992,0.178602088,pos,ns,0.748113468,-0.0000921,0.0000462,-1.993179445,0.04711804,neg,ns,0.94860351,Trpm7,Trpm7_Exon,2,126822486,126822535,126822534,126822535,50,-,ATTACATAAGGTCCTGCCTGTTGATTTACAGCTAGAAAATCTAGCAAACG,"Exon (Trpm7-202/Trpm7, exon 21 of 39)",2,126791565,126876230,84666,2,Trpm7-202,53695,Trpm7-202;Trpm7-201;Trpm7-209,Trpm7;Trpm7;Trpm7,0;0;-4820,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,4,58800,ENSMUSG00000027365,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22783,cg03311232,0.0000794,0.00000621,12.79218077,2.24E-30,gain,yes,-0.00000525,0.0000105,-0.49807814,0.618782128,neg,ns,0.00456843,0.003088978,1.478945675,0.140170228,pos,ns,0.853344219,-0.0000332,0.00010623,-0.312564063,0.754822037,neg,ns,0.146722816,Dmbx1,Dmbx1_Promoter,4,115944245,115944294,115944293,115944294,50,+,GACTAACAAAGCAATTTGCCACGAGCCATCTCCTGGACAGGTTATTAGCG,Promoter (4-5kb),4,115915120,115939926,24807,2,Dmbx1-202,-4319,Dmbx1-203;Dmbx1-202,Dmbx1;Dmbx1,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,9,42,140477,ENSMUSG00000028707,conserved gene but different region,4,115943986,115944303,318,*,318,35,0.694968554,0.925340871,0.110062893,1.76E-28,CpGisland,TRUE,U13,Hc-P
6365,cg21371906,-0.0000276,0.00000864,-3.198446302,0.001524547,loss,ns,-0.00000731,0.0000147,-0.498034248,0.618813028,neg,ns,-0.009914147,0.00430058,-2.30530482,0.021809603,neg,ns,1.661352232,0.0000895,0.000147897,0.604958689,0.545649009,pos,ns,0.671840675,Pknox2,Pknox2_Intron,9,37013735,37013784,37013783,37013784,50,+,ATGCTAATTGTTCTGAATGAACAGCTCCAGCTGGAAAAGCAGGCAGGCCG,"Intron (Pknox2-207/Pknox2, intron 1 of 10)",9,36890982,37083309,192328,2,Pknox2-207,69525,Pknox2-207;Pknox2-201;Pknox2-202;Pknox2-206;Pknox2-204;Pknox2-205;Pknox2-208;Pknox2-210;Pknox2-209;Pknox2-212;Pknox2-211,Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,47,208076,ENSMUSG00000035934,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11976,cg23093870,0.0000767,0.0000148,5.178327512,0.000000404,gain,yes,-0.0000125,0.0000251,-0.497968827,0.618859085,neg,ns,0.028687937,0.007368019,3.893575199,0.000120993,pos,ns,3.917239491,-0.000485145,0.000253386,-1.914653192,0.056456992,neg,ns,0.44050355,Gm19208,Gm19208_Intergenic_upstream,9,61841450,61841499,61841498,61841499,50,+,ATTGATTGACAGATTCGGGGACCAACTGTTTAGAAAGCTGAGCCCCCTCG,Distal Intergenic,9,61851704,61852615,912,1,Gm19208-201,-10205,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,3,100418429,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20406,cg24477176,-0.00000123,0.0000083,-0.148538774,0.882014163,loss,ns,0.00000702,0.0000141,0.497878614,0.6189226,pos,ns,0.00122639,0.004130084,0.296940556,0.766710755,pos,ns,0.115368445,-0.0000603,0.000142033,-0.424780062,0.671291686,neg,ns,0.105408258,Hoxc4,Hoxc4_Intron,15,103032909,103032958,103032909,103032910,50,+,CGTTTTACAGCCCTATAAAAGCTGTAGCGACGAGGCAAGCGCTCCTACCA,"Intron (Hoxc4-202/Hoxc4, intron 1 of 3)",15,103018934,103036405,17472,1,Hoxc4-202,13975,Hoxc4-202;Hoxc4-201,Hoxc4;Hoxc4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,91,15423,ENSMUSG00000075394,conserved gene and region,15,103032736,103032961,226,*,226,19,0.517699115,1.262198707,0.084070797,2.37E-13,CpGisland,TRUE,U13,Hc-P
19199,cg04307172,-0.00000506,0.00000154,-3.291852726,0.001110223,loss,ns,0.0000013,0.00000261,0.4977971,0.618979991,pos,ns,0.001261089,0.000765391,1.647640149,0.100439709,pos,ns,0.998094556,-0.0000453,0.0000263,-1.721473503,0.086162554,neg,ns,0.043988683,Nr1d1,Nr1d1_fiveUTR,11,98775273,98775322,98775321,98775322,50,+,TGGGACAGAGGGCTCTGCGCAGGCGCCAGCAGCCCAGGGTTCCCGGGCCG,Promoter (<=1kb),11,98767932,98775333,7402,2,Nr1d1-201,11,Nr1d1-201;Nr1d1-202,Nr1d1;Nr1d1,0;-4847,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,9,217166,ENSMUSG00000020889,conserved gene but different region,11,98775184,98775428,245,*,245,18,0.624489796,0.760869565,0.073469388,1.20E-11,CpGisland,TRUE,U6,En-Sp
12571,cg07092263,-0.0000112,0.00000433,-2.596385852,0.009869836,loss,ns,-0.00000366,0.00000735,-0.497770423,0.618998775,neg,ns,0.002266718,0.002153601,1.052524656,0.293378619,pos,ns,0.53257154,-0.000109392,0.0000741,-1.477027752,0.140683342,neg,ns,0.960975845,Tjp1,Tjp1_threeUTR,7,65299693,65299742,65299741,65299742,50,+,AGAGCAAAAGACCAACCGTCAGGAGTCATGGACGCACAGTGTGGTAAGCG,3' UTR,7,65296165,65371239,75075,2,Tjp1-202,71497,Tjp1-202;Tjp1-201;Tjp1-207;Tjp1-203,Tjp1;Tjp1;Tjp1;Tjp1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,13,21872,ENSMUSG00000030516,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17303,cg19491113,-0.0000241,0.00000883,-2.730376034,0.006688108,loss,ns,-0.00000746,0.000015,-0.497657534,0.619078262,neg,ns,0.000512038,0.004393521,0.116543822,0.907297022,pos,ns,0.042250515,-0.000289847,0.000151093,-1.918336298,0.055986704,neg,ns,0.68654713,Shank3,Shank3_threeUTR,15,89549499,89549548,89549499,89549500,50,-,CGAGAAGCCACCAGTGCCTCCCAAGCCCAAGCTCAAGTCCCCGCTGGGGA,3' UTR,15,89499623,89560261,60639,1,Shank3-203,49876,Shank3-203;Shank3-202;Shank3-209;Shank3-208;Shank3-201,Shank3;Shank3;Shank3;Shank3;Shank3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,2,58234,ENSMUSG00000022623,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8259,cg08273014,-0.0000184,0.00000535,-3.438606286,0.000664699,loss,ns,-0.00000452,0.00000909,-0.497596432,0.619121287,neg,ns,-0.00494634,0.002663905,-1.856800523,0.064287981,neg,ns,1.191870212,0.000120349,0.0000916,1.313684017,0.189923937,pos,ns,0.889406134,Zcchc7,Zcchc7_Intron,4,44905672,44905721,44905720,44905721,50,-,GCAGGGACCCAAGTCTCCTGGGCTGGCCGCGCTCTCATTAAGATTTGCCG,"Intron (Zcchc7-203/Zcchc7, intron 5 of 8)",4,44756568,44932203,175636,1,Zcchc7-203,149104,Zcchc7-203;Zcchc7-207;Zcchc7-205;Zcchc7-201;Zcchc7-202,Zcchc7;Zcchc7;Zcchc7;Zcchc7;Zcchc7,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,27,27,319885,ENSMUSG00000035649,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
16216,cg07206839,0.0000696,0.0000112,6.236827157,1.46E-09,gain,yes,-0.00000944,0.000019,-0.497563881,0.619144208,neg,ns,0.008275094,0.005556103,1.489370214,0.137406551,pos,ns,0.86199256,-0.000295055,0.000191074,-1.544194827,0.123561331,neg,ns,0.301184081,Cacna1a,Cacna1a_Intron,8,84600740,84600789,84600788,84600789,50,+,GGCAGGAGCGGGTGGGCAGCTCGGCAGGGCAGGGCAGGGCAGGGTGCCCG,"Intron (Cacna1a-213/Cacna1a, intron 33 of 48)",8,84338639,84640246,301608,1,Cacna1a-213,262101,Cacna1a-213;Cacna1a-201;Cacna1a-202;Cacna1a-211;Cacna1a-212;Cacna1a-208;Cacna1a-207;Cacna1a-209;Cacna1a-210,Cacna1a;Cacna1a;Cacna1a;Cacna1a;Cacna1a;Cacna1a;Cacna1a;Cacna1a;Cacna1a,0;0;0;0;0;-642;-655;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,12,12286,ENSMUSG00000034656,conserved gene and region,8,84600578,84600896,319,*,319,21,0.695924765,0.547303922,0.065830721,1.50E-12,CpGisland,TRUE,NA,NRS
15857,cg04893067,-0.0000034,0.0000016,-2.129265154,0.034020139,loss,ns,-0.00000135,0.00000271,-0.497532202,0.619166516,neg,ns,0.000114568,0.000794056,0.144282539,0.885371118,pos,ns,0.05287465,-0.0000495,0.0000273,-1.811411882,0.071044828,neg,ns,0.950572879,Pkn1,Pkn1_Exon,8,83687117,83687166,83687117,83687118,50,-,CGGATGATGTCAATCTTGGTCTTACTGTCCTGCAACATCTGCTGGGCTGT,"Exon (Pkn1-201/Pkn1, exon 4 of 22)",8,83666536,83699179,32644,2,Pkn1-201,12013,Pkn1-201;Pkn1-208;Pkn1-204;Pkn1-206,Pkn1;Pkn1;Pkn1;Pkn1,0;0;0;12001,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,320795,ENSMUSG00000057672,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10790,cg20621276,0.0000212,0.00000989,2.146991544,0.032569394,gain,ns,-0.00000835,0.0000168,-0.497437491,0.619233211,neg,ns,-0.004205486,0.004920577,-0.854673374,0.393392007,neg,ns,0.405174469,0.000178225,0.000169218,1.053225891,0.293057704,pos,ns,0.154791843,Kcnj3,Kcnj3_Exon,2,55437719,55437768,55437719,55437720,50,+,CGCCTTCCTCATCGGCTGCATGTTCATCAAGATGTCCCAGCCCAAGAAGC,"Exon (Kcnj3-201/Kcnj3, exon 2 of 4)",2,55435970,55598145,162176,1,Kcnj3-201,1749,Kcnj3-201;Kcnj3-203;Kcnj3-202,Kcnj3;Kcnj3;Kcnj3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,6,16519,ENSMUSG00000026824,conserved gene but different region,2,55437713,55437886,174,*,174,14,0.574712644,0.984242424,0.08045977,1.09E-09,CpGisland,TRUE,U13,Hc-P
25435,cg27657271,-0.0000033,0.00000131,-2.530462069,0.011885922,loss,ns,0.0000011,0.00000222,0.497353567,0.619292313,pos,ns,0.000700844,0.0006496,1.078886305,0.281477151,pos,ns,0.550556853,-0.0000124,0.0000223,-0.554560763,0.579594997,neg,ns,0.046719542,Cux1,Cux1_Promoter,5,136566911,136566960,136566911,136566912,50,+,CGCCATCTTGGGCTGATCGATGAATTGAACAAAGAGGATCAATTTCCGAT,Promoter (<=1kb),5,136248135,136567248,319114,2,Cux1-207,288,Cux1-207;Cux1-211;Cux1-203;Cux1-213;Cux1-201;Cux1-204;Cux1-212;Cux1-206;Cux1-210;Cux1-214,Cux1;Cux1;Cux1;Cux1;Cux1;Cux1;Cux1;Cux1;Cux1;Cux1,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,1,21,13047,ENSMUSG00000029705,conserved gene and region,5,136566666,136567259,594,*,594,56,0.668350168,0.844478294,0.094276094,3.36E-41,CpGisland,TRUE,NA,NRS
18505,cg06938012,-0.000013,0.00000393,-3.308873375,0.001047059,loss,ns,-0.00000332,0.00000668,-0.497201619,0.619399326,neg,ns,-0.004984129,0.001957363,-2.546348532,0.011369115,neg,ns,1.94427334,0.00000718,0.0000673,0.10672492,0.915076245,pos,ns,0.050561042,Cnot6l,Cnot6l_Intron,5,96162556,96162605,96162604,96162605,50,-,GAGGGTTGATTGACGTGGAGGGGCTGGCGGGAGTCAGTCACTCCCCGGCG,"Intron (Cnot6l-206/Cnot6l, intron 1 of 2)",5,96131097,96164171,33075,2,Cnot6l-206,1566,Cnot6l-210;Cnot6l-201;Cnot6l-202;Cnot6l-203;Cnot6l-204;Cnot6l-207;Cnot6l-206;Cnot6l-209,Cnot6l;Cnot6l;Cnot6l;Cnot6l;Cnot6l;Cnot6l;Cnot6l;Cnot6l,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,13,231464,ENSMUSG00000034724,conserved gene but different region,5,96162428,96162717,290,*,290,33,0.665517241,1.066889632,0.113793103,2.11E-27,CpGisland,TRUE,U1,Pr-A
688,cg14378629,0.0000466,0.0000086,5.414630387,0.000000123,gain,yes,-0.00000726,0.0000146,-0.497154483,0.619432524,neg,ns,-0.008142963,0.004278906,-1.903048019,0.057960489,neg,ns,1.236867962,0.000346069,0.000147151,2.351790032,0.019308767,pos,ns,0.811867163,Apob,Apob_Intron,12,8056513,8056562,8056513,8056514,50,+,CGAACAGAGAAAATATATATTTTAAGAAGAAAATGTGAATCCAGGGTTAC,"Intron (Gm33037-201/Gm33037-201, intron 2 of 3)",12,8012359,8016835,4477,1,Apob-203,44154,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,4,238055,ENSMUSG00000020609,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22878,cg10091639,-0.0000329,0.0000137,-2.411827403,0.016453625,loss,ns,-0.0000115,0.0000232,-0.497138611,0.619443703,neg,ns,0.008086927,0.006799013,1.189426536,0.235182076,pos,ns,0.628595781,-0.000308373,0.000233818,-1.318862559,0.188188491,neg,ns,0.70809049,Meis2,Meis2_Exon,2,116061549,116061598,116061597,116061598,50,-,CGCACTTCTCAAAGACCAGAGCTAACAGAGGAAACAACGGGTGCCTAACG,"Exon (Meis2-201/Meis2, exon 3 of 12)",2,115863064,116065047,201984,2,Meis2-201,3449,Meis2-201;Meis2-203;Meis2-205;Meis2-206;Meis2-204;Meis2-202;Meis2-213;Meis2-210;Meis2-209;Meis2-212,Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2,0;0;0;0;0;0;0;0;0;-2707,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,15,97,17536,ENSMUSG00000027210,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11117,cg05956688,0.0000167,0.00000836,1.996793665,0.046721675,gain,ns,0.00000706,0.0000142,0.497037335,0.619515036,pos,ns,-0.006010268,0.004159064,-1.445100899,0.149439615,neg,ns,0.82553426,0.000203681,0.00014303,1.424047057,0.155438633,pos,ns,0.762278743,Slc9a6,Slc9a6_Exon,X,56645805,56645854,56645805,56645806,50,+,CGTGGTGCAATGGCATTTGCCTTGGCCATTCGAGATACTGCCACTTATGC,Promoter (<=1kb),20,56645848,56661381,15534,1,Slc9a6-205,0,Slc9a6-201;Slc9a6-202;Slc9a6-205,Slc9a6;Slc9a6;Slc9a6,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,236794,ENSMUSG00000060681,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13227,cg17929028,-0.0000214,0.00000661,-3.235906762,0.001343647,loss,ns,0.00000558,0.0000112,0.496990121,0.619548292,pos,ns,0.007629642,0.003287494,2.320807558,0.02094578,pos,ns,1.678903472,-0.0000196,0.000113057,-0.172943472,0.862808722,neg,ns,0.249673604,Gm44690,Gm44690_Intergenic_downstream,7,69811186,69811235,69811186,69811187,50,-,CGTAAATAACTGGGAGCCCCGTGTTTGTTAGTATTGTGAATGAGTTTATT,Distal Intergenic,7,69883979,69884360,382,2,Gm44690-201,73174,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,24,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21616,cg13051748,-0.000000663,0.0000032,-0.207097037,0.836070044,loss,ns,-0.0000027,0.00000544,-0.4969656,0.619565564,neg,ns,0.004380139,0.001593269,2.749153157,0.00632544,pos,ns,2.198909287,-0.000153843,0.0000548,-2.807737692,0.005305344,neg,ns,0.923748015,Wdr6,Wdr6_Exon,9,108572999,108573048,108572999,108573000,50,-,CGGTGGCCAAACTCAGGGCTCACAGGCCAGCAGTCCATGTCAGCCACATC,"Exon (Wdr6-201/Wdr6, exon 6 of 6)",9,108572311,108578739,6429,2,Wdr6-201,5691,Dalrd3-201;Dalrd3-209;Dalrd3-206;Dalrd3-205;Dalrd3-208;Dalrd3-203;Dalrd3-207;Dalrd3-202;Dalrd3-204;Wdr6-201,Dalrd3;Dalrd3;Dalrd3;Dalrd3;Dalrd3;Dalrd3;Dalrd3;Dalrd3;Dalrd3;Wdr6,3113;3089;3085;2303;1992;1762;1487;732;607;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,Exon,1,1,83669,ENSMUSG00000066357,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16146,cg09358513,-0.0000275,0.00000773,-3.555788462,0.00043566,loss,ns,-0.00000652,0.0000131,-0.496885367,0.61962208,neg,ns,-0.008861398,0.003846984,-2.303465978,0.021914104,neg,ns,1.659276288,0.00006,0.000132297,0.453385363,0.650588472,pos,ns,0.867390159,Bnc2,Bnc2_Intron,4,84529547,84529596,84529595,84529596,50,-,TCGCGTGTCATGTGTAGAGTGCAGCTCTTGGCCATCACTGCTGTCCCTCG,"Intron (Bnc2-201/Bnc2, intron 3 of 7)",4,84275095,84675034,399940,2,Bnc2-201,145438,Bnc2-201;Bnc2-202;Bnc2-214;Bnc2-215;Bnc2-206;Bnc2-211;Bnc2-217;Bnc2-207;Bnc2-212;Bnc2-203;Bnc2-209;Bnc2-221;Bnc2-204;Bnc2-220,Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,91,242509,ENSMUSG00000028487,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5192,cg10725603,-0.00000218,0.00000471,-0.463070641,0.643638645,loss,ns,0.00000397,0.00000799,0.496839171,0.619654621,pos,ns,0.006685704,0.002341804,2.854937411,0.004594738,pos,ns,2.337739223,-0.00028206,0.0000805,-3.502356751,0.000528958,neg,ns,0.899830887,Gm5415,Gm5415_Intergenic_upstream,1,32658995,32659044,32658995,32658996,50,+,CGCAGGACTCAAAGGATGACTAAACGTTAAACAGGTAACACTAATAGTAA,Distal Intergenic,1,32543686,32547294,3609,2,Gm5415-201,-111701,Khdrbs2-201,Khdrbs2,486281,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,408191,ENSMUSG00000091318,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11669,cg12664290,-0.00000268,0.000000963,-2.781049232,0.005749951,loss,ns,0.000000813,0.00000164,0.49673665,0.619726841,pos,ns,0.000916075,0.0004792,1.911676483,0.056839492,pos,ns,1.245349816,-0.0000211,0.0000165,-1.281906538,0.200833317,neg,ns,0.033536561,Bmpr2,Bmpr2_Intron,1,59764928,59764977,59764928,59764929,50,-,CGGGGTGAAAAAGACATATTGGGTGTGGTATCTTGACATTTTTAGCTGTG,"Intron (Bmpr2-201/Bmpr2, intron 1 of 12)",1,59763400,59879014,115615,1,Bmpr2-201,1528,Bmpr2-201,Bmpr2,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,12168,ENSMUSG00000067336,conserved gene and region,1,59764776,59764929,154,*,154,11,0.642857143,0.7,0.071428571,0.000000364,CpGisland,TRUE,NA,NRS
3479,cg01818075,0.0000141,0.00000614,2.292358711,0.022554679,gain,ns,-0.00000518,0.0000104,-0.496696418,0.619755183,neg,ns,0.008440385,0.003053759,2.763932495,0.006052599,pos,ns,2.218058119,-0.000345814,0.000105019,-3.292885999,0.00110629,neg,ns,0.762996873,Bcl11a,Bcl11a_Exon,11,24163677,24163726,24163725,24163726,50,-,AAAGGTTACTGCAACCATTCCAGCCAGGTAGCAAGCCGCCCTTCCTGGCG,"Exon (Bcl11a-201/Bcl11a, exon 4 of 5)",11,24078056,24173194,95139,1,Bcl11a-201,85621,Bcl11a-201;Bcl11a-203;Bcl11a-202;Bcl11a-204;Bcl11a-206,Bcl11a;Bcl11a;Bcl11a;Bcl11a;Bcl11a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,51,98,14025,ENSMUSG00000000861,conserved gene and region,11,24163725,24163848,124,*,124,9,0.612903226,0.894230769,0.072580645,0.00000547,CpGisland,TRUE,U10,Tr-S
7337,cg06002138,0.00000172,0.00000197,0.872919699,0.383382488,gain,ns,-0.00000166,0.00000334,-0.496671904,0.619772453,neg,ns,0.001261084,0.000978426,1.288890363,0.198397185,pos,ns,0.702464494,-0.000028,0.0000336,-0.832560323,0.405733672,neg,ns,0.958248666,Fam131b,Fam131b_Exon,6,42321252,42321301,42321300,42321301,50,-,GAGAATGATGACTTGGCCAGGGCCCCAATGCCATAGGCGTTAGAGTTTCG,"Exon (Fam131b-201/Fam131b, exon 3 of 6)",6,42315312,42324640,9329,2,Fam131b-201,3339,Fam131b-201;Fam131b-203;Fam131b-202,Fam131b;Fam131b;Fam131b,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,76156,ENSMUSG00000029861,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13777,cg07608875,-0.0000134,0.00000434,-3.07469903,0.002294646,loss,ns,-0.00000366,0.00000738,-0.496531164,0.619871606,neg,ns,-0.003960238,0.002161982,-1.831762185,0.067946257,neg,ns,1.167834465,-0.0000439,0.0000744,-0.589814002,0.555744996,neg,ns,0.884337629,Rfx7,Rfx7_Exon,9,72593248,72593297,72593296,72593297,50,-,GCCATGTCATCTAGTCGGGCACAACAAATGCATGCCTTTTCCTGGATTCG,"Exon (Rfx7-202/Rfx7, exon 4 of 9)",9,72532240,72622829,90590,1,Rfx7-202,61008,Rfx7-202;Rfx7-201;Rfx7-206;Rfx7-203;Rfx7-205,Rfx7;Rfx7;Rfx7;Rfx7;Rfx7,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,8,319758,ENSMUSG00000037674,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21407,cg19841792,-0.0000207,0.00000474,-4.371367187,0.0000169,loss,ns,0.000004,0.00000805,0.496508835,0.619887338,pos,ns,-0.00505569,0.002358217,-2.143861082,0.032821654,neg,ns,1.483839532,0.000173687,0.0000811,2.141672394,0.032999021,pos,ns,0.916835583,Ahcyl1,Ahcyl1_Promoter,3,107703856,107703905,107703856,107703857,50,-,CGGGCCCCATTGCATCACCCTTGGAGTCTCTGCTCCTGGCTTTGCAGCCA,Promoter (7-8kb),3,107663120,107696560,33441,2,Ahcyl1-201,-7345,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,4,229709,ENSMUSG00000027893,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12244,cg17489134,0.000000163,0.000000963,0.168795794,0.866067348,gain,ns,-0.000000812,0.00000164,-0.496459729,0.619921935,neg,ns,0.000706525,0.000479351,1.473918817,0.141518176,pos,ns,0.849187777,-0.000013,0.0000165,-0.790357078,0.429923445,neg,ns,0.024728713,Ptch1,Ptch1_fiveUTR,13,63563726,63563775,63563774,63563775,50,+,GTTTTTTTGAATGTAACAACCCAGTTTAAATAAGAGTCTCTGAAACTTCG,5' UTR,13,63508328,63565735,57408,2,Ptch1-201,1960,Ptch1-201;Ptch1-204;Ptch1-206;Ptch1-202;Ptch1-207;Ptch1-203;Ptch1-205,Ptch1;Ptch1;Ptch1;Ptch1;Ptch1;Ptch1;Ptch1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,9,36,19206,ENSMUSG00000021466,conserved gene and region,13,63563774,63564066,293,*,293,23,0.686006826,0.669215492,0.078498294,2.20E-15,CpGisland,TRUE,U1,Pr-A
14418,cg00887982,-0.0000292,0.00000507,-5.755189538,2.08E-08,loss,yes,-0.00000428,0.00000862,-0.496344318,0.620003251,neg,ns,0.013589827,0.002525348,5.38136718,0.000000146,pos,ns,6.835485828,-0.000354045,0.0000868,-4.076677755,0.0000581,neg,ns,0.897817733,Fam98a,Fam98a_Exon,17,75541210,75541259,75541210,75541211,50,+,CGCTGAAGAATTGGAACATAGTTATATTGGCTGGAGGTTTGGACATTCCT,"Exon (Fam98a-201/Fam98a, exon 4 of 8)",17,75537086,75551946,14861,2,Fam98a-201,10687,Fam98a-201;Fam98a-204;Fam98a-202;Fam98a-205;Fam98a-203,Fam98a;Fam98a;Fam98a;Fam98a;Fam98a,0;0;-638;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,6,72722,ENSMUSG00000002017,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19616,cg26536257,-0.000017,0.00000413,-4.104744642,0.0000518,loss,ns,0.00000348,0.00000702,0.496308196,0.620028703,pos,ns,0.002586356,0.002056576,1.257603108,0.209481867,pos,ns,0.678853565,-0.000149216,0.0000707,-2.109790008,0.03567766,neg,ns,0.919099663,Gm8641,Gm8641_Intergenic_upstream,9,100131325,100131374,100131373,100131374,50,-,TTGTGGATCTTCATATCTAATAAAGCTCCAAGGGGCTCTTTTCTTCTCCG,Distal Intergenic,9,99946564,99947389,826,2,Gm8641-201,-183985,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,15,667456,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1477,cg02731116,-0.000026,0.00000913,-2.853593492,0.00461371,loss,ns,-0.0000077,0.0000155,-0.49629961,0.620034753,neg,ns,-0.005253081,0.004543384,-1.156204604,0.248487736,neg,ns,0.604695041,-0.000167925,0.000156247,-1.07474081,0.283326578,neg,ns,0.597849025,Triqk,Triqk_Intergenic_downstream,4,13146968,13147017,13146968,13146969,50,-,CGAAAAACTAGTTGCACTGATGATTCCCTGCACATGTAGGAGACAGTTTG,Distal Intergenic,4,12917967,12981070,63104,1,Triqk-202,229050,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,11,208820,ENSMUSG00000055963,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22840,cg10498963,-0.00000332,0.00000134,-2.478950284,0.013708593,loss,ns,0.00000113,0.00000228,0.496127955,0.620155709,pos,ns,-0.000277303,0.000667274,-0.415576153,0.678007689,neg,ns,0.168765381,0.00000927,0.0000229,0.404018968,0.686477345,pos,ns,0.047297727,Galk1,Galk1_Exon,11,116012519,116012568,116012567,116012568,50,+,GCAGCACCAGGCCCTGGTTGTAGTCCGTGTGTTCCCCGATGAGGTTGACG,Promoter (<=1kb),11,116008457,116012719,4263,2,Galk1-201,151,Galk1-201;Itgb4-201;Itgb4-205;Itgb4-210;Itgb4-204;Itgb4-202;Itgb4-203,Galk1;Itgb4;Itgb4;Itgb4;Itgb4;Itgb4;Itgb4,0;37810;37794;37794;37540;34733;34733,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,14635,ENSMUSG00000020766,conserved gene and region,11,116012544,116012895,352,*,352,38,0.693181818,0.907462687,0.107954546,1.56E-30,CpGisland,TRUE,U1,Pr-A
18453,cg04040539,-0.000000604,0.00000167,-0.360598043,0.718645537,loss,ns,0.00000141,0.00000284,0.496124127,0.620158406,pos,ns,-0.000137091,0.000833098,-0.164555164,0.869401368,neg,ns,0.060779681,-0.0000234,0.0000287,-0.815489328,0.415418379,neg,ns,0.946622236,Cnot1,Cnot1_threeUTR,8,95772073,95772122,95772121,95772122,50,+,CTATTGCTATATCTTGGAAGCCACCTTCTTGATTTCCACTGACGTCTGCG,3' UTR,8,95719451,95807462,88012,2,Cnot1-202,35340,Cnot1-202;Cnot1-201;Cnot1-203;Cnot1-216;Cnot1-217;Cnot1-207;Cnot1-209,Cnot1;Cnot1;Cnot1;Cnot1;Cnot1;Cnot1;Cnot1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,8,24,234594,ENSMUSG00000036550,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4960,cg19764539,-0.00000179,0.00000145,-1.23192376,0.218911181,loss,ns,0.00000123,0.00000247,0.496078989,0.620190214,pos,ns,0.000329739,0.000723953,0.455470787,0.649089434,pos,ns,0.18769546,-0.000000929,0.0000249,-0.037303668,0.970266891,neg,ns,0.038080431,Pknox1,Pknox1_fiveUTR,17,31564837,31564886,31564837,31564838,50,-,CGGGTCCCGATTGCTGCAGCCGCTTGTCAGTGTGATGAAGATTGGCACCC,Promoter (<=1kb),17,31564862,31605492,40631,1,Pknox1-202,0,Pknox1-201;Pknox1-206;Pknox1-212;Pknox1-209;Pknox1-202;Pknox1-208,Pknox1;Pknox1;Pknox1;Pknox1;Pknox1;Pknox1,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,8,8,18771,ENSMUSG00000006705,conserved gene and region,17,31564426,31564858,433,*,433,56,0.769053118,0.874873719,0.129330254,1.05E-49,CpGisland,TRUE,U1,Pr-A
819,cg17656306,-0.0000857,0.0000142,-6.020684454,4.91E-09,loss,yes,-0.000012,0.0000242,-0.495972498,0.62026526,neg,ns,-0.011216486,0.007083598,-1.583444759,0.114339742,neg,ns,0.941802791,0.0000949,0.000243604,0.389489944,0.697181181,pos,ns,0.838813817,1810013L24Rik,1810013L24Rik_Exon,16,8843123,8843172,8843123,8843124,50,-,CGAAACTCTAGAGCTCCCCCAAGACTGACTGTAGTGTCCCCTAACCGAGC,"Exon (1810013L24Rik-201/1810013L24Rik, exon 3 of 4)",16,8830100,8858922,28823,1,1810013L24Rik-201,13023,1810013L24Rik-201;1810013L24Rik-202,1810013L24Rik;1810013L24Rik,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,18,19,69053,ENSMUSG00000022507,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21459,cg06640372,-0.00000297,0.00000107,-2.759371443,0.006135642,loss,ns,-0.000000906,0.00000183,-0.495970987,0.620266325,neg,ns,-0.000750963,0.000535023,-1.403608812,0.161436282,neg,ns,0.791998852,-0.00000966,0.0000184,-0.524786126,0.600106956,neg,ns,0.034352566,Zswim6,Zswim6_Intron,13,107831364,107831413,107831364,107831365,50,-,CGGCCGCATTCCTAAACAGTTCAGACAAACCCACTGGTGGGAAGCTTCGA,"Intron (Zswim6-204/Zswim6, intron 1 of 12)",13,107724617,107890064,165448,2,Zswim6-204,58651,Zswim6-204;Zswim6-201,Zswim6;Zswim6,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,26,67263,ENSMUSG00000032846,conserved gene and region,13,107831216,107831369,154,*,154,16,0.694805195,0.902564103,0.103896104,8.54E-13,CpGisland,TRUE,U2,Pr-W
13961,cg08251399,0.0000809,0.0000186,4.34314732,0.0000191,gain,ns,0.0000157,0.0000316,0.49595833,0.620275244,pos,ns,0.011256604,0.009266192,1.21480356,0.225365506,pos,ns,0.647112555,-0.0000747,0.000318664,-0.234381414,0.814843609,neg,ns,0.351071537,Ehd3,Ehd3_Exon,17,73805315,73805364,73805363,73805364,50,+,CTCAAGAAACTCTACAAGAGCAAGCTGCTGCCCTTGGAAGAGCATTACCG,"Exon (Ehd3-202/Ehd3, exon 1 of 1)",17,73804134,73807661,3528,1,Ehd3-202,1181,Ehd3-202;Ehd3-201,Ehd3;Ehd3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,57440,ENSMUSG00000024065,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
10662,cg27160009,-0.00000825,0.00000177,-4.655877842,0.00000479,loss,ns,0.00000149,0.00000301,0.495954416,0.620278003,pos,ns,-0.000381731,0.000881792,-0.432902987,0.665386279,neg,ns,0.176926159,0.0000202,0.0000303,0.667495593,0.504952208,pos,ns,0.962016311,Zfp608,Zfp608_threeUTR,18,54897236,54897285,54897284,54897285,50,-,CCTCCTTAATAAGCTGGTGGTTTTCCATCTGCTTAGCTTTGAAGCTGTCG,3' UTR,18,54888048,54990166,102119,2,Zfp608-201,92881,Zfp608-201;Zfp608-204;Zfp608-203;Zfp608-202,Zfp608;Zfp608;Zfp608;Zfp608,0;0;0;-1674,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,32,269023,ENSMUSG00000052713,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14703,cg25751624,0.00000758,0.00000444,1.706396802,0.088935705,gain,ns,-0.00000374,0.00000755,-0.495870139,0.620337398,neg,ns,-0.001699266,0.002211229,-0.76847135,0.442792226,neg,ns,0.353800013,0.0000578,0.000076,0.760202671,0.447711219,pos,ns,0.918789516,2210408I21Rik,2210408I21Rik_Intron,13,77388419,77388468,77388419,77388420,50,-,CGAAAGACGAAGGTGTCAAAACACAAAGTTGGAGGCAATCTAATCAATGC,"Intron (2210408I21Rik-201/2210408I21Rik, intron 19 of 19)",13,77135540,77613784,478245,1,2210408I21Rik-201,252879,2210408I21Rik-201,2210408I21Rik,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,19,20,72371,ENSMUSG00000071252,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5341,cg00877778,-0.000000686,0.0000115,-0.059650243,0.952472636,loss,ns,-0.00000968,0.0000195,-0.495599058,0.620528459,neg,ns,-0.005739642,0.00572238,-1.003016581,0.31663513,neg,ns,0.499440903,0.000263401,0.000196792,1.338472554,0.181723254,pos,ns,0.31396651,Fam53a,Fam53a_Intergenic_downstream,5,33534565,33534614,33534565,33534566,50,+,CGAGTGAGAAGGTTTGCATTATGCAAATCGTTAGATAGGAACAGGTGACA,Distal Intergenic,5,33600356,33628912,28557,2,Fam53a-203,94298,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,13,13,74504,ENSMUSG00000037339,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
21138,cg19983638,-0.0000381,0.0000153,-2.493158738,0.013182575,loss,ns,0.0000129,0.000026,0.495387536,0.62067756,pos,ns,-0.019456668,0.007605051,-2.558387508,0.010990923,neg,ns,1.958965849,0.0003447,0.000261537,1.31797762,0.188484219,pos,ns,0.49191155,Gm17304,Gm17304_Exon,5,106557931,106557980,106557979,106557980,50,-,GTGGTGACTAATTGCCCCCGTAAATCACCGAGCAGCACTGTGCTACTCCG,"Exon (Gm28050-201/Gm28050-201, exon 2 of 2)",5,106609098,106609201,104,1,Gm17304-201,-51167,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,35,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
15381,cg27587645,-0.00000127,0.00000162,-0.783826362,0.433740474,loss,ns,0.00000137,0.00000276,0.495336323,0.620713663,pos,ns,0.001022287,0.000808454,1.264496381,0.207001763,pos,ns,0.684025955,-0.0000213,0.0000278,-0.764976768,0.444867335,neg,ns,0.066870693,Btbd2,Btbd2_Exon,10,80656145,80656194,80656145,80656146,50,+,CGCTGCGAGCTGAGCCCCTTGCCCACCAGGAAGTGCACGTCGCACAGCAC,Promoter (<=1kb),10,80642617,80656494,13878,2,Btbd2-202,300,Btbd2-202;Btbd2-201;Btbd2-203,Btbd2;Btbd2;Btbd2,0;0;-7,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,208198,ENSMUSG00000003344,conserved gene and region,10,80656108,80656636,529,*,529,72,0.754253308,0.978371436,0.13610586,1.23E-65,CpGisland,TRUE,NA,NRS
22374,cg21472737,-0.0000192,0.00000637,-3.012851945,0.002801356,loss,ns,-0.00000536,0.0000108,-0.495328037,0.620719504,neg,ns,-0.009864275,0.003170088,-3.111672613,0.002033503,neg,ns,2.691755192,0.000258297,0.000109019,2.369285202,0.018434919,pos,ns,0.900641672,Atp2b2,Atp2b2_Exon,6,113755361,113755410,113755361,113755362,50,-,CGCTCTTGAAAGTATTGACTACTTCAATCTGCAACGGAGGAGAGAACGAG,"Exon (Atp2b2-206/Atp2b2, exon 22 of 24)",6,113743831,114042026,298196,2,Atp2b2-203,286616,Atp2b2-203;Atp2b2-201;Atp2b2-206;Atp2b2-208;Atp2b2-202,Atp2b2;Atp2b2;Atp2b2;Atp2b2;Atp2b2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,8,11941,ENSMUSG00000030302,conserved gene and region,6,113755143,113755487,345,*,345,24,0.608695652,0.753480754,0.069565217,8.32E-15,CpGisland,TRUE,U11,Tr-P
11824,cg27304516,0.000000507,0.00000136,0.371659013,0.710400646,gain,ns,0.00000115,0.00000232,0.495298045,0.620740647,pos,ns,0.00085839,0.000679156,1.263906838,0.207213032,pos,ns,0.683582935,-0.0000217,0.0000234,-0.927375377,0.354453124,neg,ns,0.049517801,Rbms1,Rbms1_fiveUTR,2,60962726,60962775,60962726,60962727,50,+,CGTACTGAGGGTACATCTGCTGTTTCCACACTTTGCCCATGAAGCTGGAA,Promoter (<=1kb),2,60750193,60963192,213000,2,Rbms1-201,417,Rbms1-201,Rbms1,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,4,56878,ENSMUSG00000026970,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
22263,cg15462582,0.0000164,0.0000026,6.317294155,9.23E-10,gain,yes,-0.00000219,0.00000442,-0.495289261,0.62074684,neg,ns,0.003630553,0.0012952,2.803082615,0.005380574,pos,ns,2.269171379,-0.000125761,0.0000445,-2.823429669,0.005058729,neg,ns,0.030145719,Tead1,Tead1_Promoter,7,112680145,112680194,112680193,112680194,50,+,AAAATTTTCAGGAGTCAGCAGAAACATTGTGTCCAAAAAAGACTGAGTCG,Promoter (<=1kb),7,112679318,112899459,220142,1,Tead1-203,827,Tead1-203;Tead1-216;Tead1-217;Tead1-201;Tead1-204;Tead1-214,Tead1;Tead1;Tead1;Tead1;Tead1;Tead1,0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,2,16,21676,ENSMUSG00000055320,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13600,cg06603975,0.0000964,0.00000683,14.10948765,2.93E-35,gain,yes,-0.00000575,0.0000116,-0.495275951,0.620756223,neg,ns,0.004774687,0.003400837,1.403974268,0.161327518,pos,ns,0.792291547,0.000142331,0.000116954,1.216976813,0.224538703,pos,ns,0.182248895,Dlx1,Dlx1_fiveUTR,2,71528278,71528327,71528278,71528279,50,+,CGTATGAAAATTAAACATCAGTGTTATGCTAATGGGGCGCCTTCAGCTGC,Promoter (<=1kb),2,71528113,71533980,5868,1,Dlx1-201,165,Dlx1-201;Dlx1-202;Dlx1-205;Dlx1-204;Dlx1-203;Dlx1-206;Metap1d-201;Metap1d-205;Metap1d-203,Dlx1;Dlx1;Dlx1;Dlx1;Dlx1;Dlx1;Metap1d;Metap1d;Metap1d,0;0;0;0;0;-2453;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,12,36,13390,ENSMUSG00000041911,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
27930,cg06300521,-0.00000814,0.00000423,-1.926344594,0.054975449,loss,ns,-0.00000356,0.00000718,-0.495087182,0.620889306,neg,ns,-0.002739075,0.002103834,-1.301944486,0.193901934,neg,ns,0.712417859,0.0000959,0.0000724,1.325091247,0.186116727,pos,ns,0.895855927,Rps6kc1,Rps6kc1_Intergenic_downstream,1,190654214,190654263,190654214,190654215,50,+,CGTTTTTCCACACGAGGCAGATGGGTAATTACGAAGCTAATAGTCTGATT,Distal Intergenic,1,190808888,190810463,1576,2,Rps6kc1-207,156200,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,14,29,320119,ENSMUSG00000089872,conserved gene and region,1,190654118,190654246,129,*,129,9,0.558139535,0.895833333,0.069767442,0.00000752,CpGisland,TRUE,U15,NS
25007,cg18480320,-0.0000187,0.00000829,-2.261968788,0.024391589,loss,ns,0.00000697,0.0000141,0.495047739,0.620917116,pos,ns,-0.005798109,0.004124737,-1.405691938,0.160817063,neg,ns,0.793667873,-0.0000613,0.000141849,-0.432016648,0.666029647,neg,ns,0.731274491,Fgfr2,Fgfr2_Intron,7,131497607,131497656,131497607,131497608,50,-,CGTTTCCAGAAGAAAATTTTTGAAAGGTGGTTTGCAGAAAGCGAAGCTGT,"Intron (Fgfr2-217/Fgfr2, intron 2 of 6)",7,130162451,133123350,2960900,2,Fgfr2-217,1625694,Fgfr2-217;Gm45105-201,Fgfr2;Gm45105,0;-3704,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,58,79,14183,ENSMUSG00000030849,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22920,cg20614809,0.00000259,0.00000428,0.604040499,0.546258495,gain,ns,0.0000036,0.00000728,0.495021484,0.620935627,pos,ns,0.004320241,0.002131904,2.026470679,0.043572436,pos,ns,1.360788163,-0.000155227,0.0000733,-2.117230852,0.035036376,neg,ns,0.922144256,Meis2,Meis2_Intergenic_upstream,2,116201412,116201461,116201460,116201461,50,-,TGTCTAGTGAGCACAGATAATGTTCATTTTGTCTGGAAGACAGGTTGCCG,Distal Intergenic,2,115863064,116065839,202776,2,Meis2-205,-135622,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,97,17536,ENSMUSG00000027210,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7391,cg10428646,-0.0000047,0.00000492,-0.954442425,0.340603389,loss,ns,-0.00000414,0.00000836,-0.494997551,0.620952502,neg,ns,0.001320019,0.002450547,0.538662956,0.590506025,pos,ns,0.228775667,-0.0000834,0.0000843,-0.990095758,0.322899479,neg,ns,0.910392011,Tcerg1,Tcerg1_Exon,18,42535098,42535147,42535146,42535147,50,-,GCAAATAGTCAGCTGCCCGTATGTAAAGACAGTCGCTACCACCAAGACCG,"Exon (Tcerg1-209/Tcerg1, exon 6 of 22)",18,42511487,42575793,64307,1,Tcerg1-209,23611,Tcerg1-209;Tcerg1-203;Tcerg1-201;Tcerg1-202;Tcerg1-208;Tcerg1-204;Tcerg1-205,Tcerg1;Tcerg1;Tcerg1;Tcerg1;Tcerg1;Tcerg1;Tcerg1,0;0;0;0;0;0;-1189,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,12,56070,ENSMUSG00000024498,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16970,cg08293279,-0.0000124,0.00000446,-2.787395634,0.005641269,loss,ns,-0.00000375,0.00000758,-0.494873025,0.621040304,neg,ns,-0.000891513,0.002220191,-0.401547793,0.68829353,neg,ns,0.162226313,-0.0000382,0.0000764,-0.500197902,0.617290624,neg,ns,0.928764432,Zfp423,Zfp423_Intron,8,87737849,87737898,87737897,87737898,50,+,CTAACTCCCTGAAAGTGCCCCAGAGAGTCTCCCTGTAATTTGTTCAAACG,"Intron (Zfp423-203/Zfp423, intron 3 of 5)",8,87661810,87804439,142630,2,Zfp423-203,66541,Zfp423-203;Zfp423-202;Zfp423-201,Zfp423;Zfp423;Zfp423,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,42,53,94187,ENSMUSG00000045333,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
104,cg06035247,-0.00000241,0.0000164,-0.14696008,0.883259058,loss,ns,0.0000138,0.0000278,0.494850536,0.621056161,pos,ns,-0.000531686,0.008155905,-0.065190267,0.94806453,neg,ns,0.023162102,-0.000349918,0.000280481,-1.247564871,0.213132049,neg,ns,0.120908344,Frmd4a,Frmd4a_Intron,2,4153362,4153411,4153410,4153411,50,-,TAGACAGCCATATTTTAGCAGGATTTCCAGTCACTCTTGCTTTGGGGCCG,"Intron (Frmd4a-208/Frmd4a, intron 1 of 1)",2,4017717,4167006,149290,1,Frmd4a-208,135645,Frmd4a-208;Frmd4a-219;Frmd4a-206;Frmd4a-202,Frmd4a;Frmd4a;Frmd4a;Frmd4a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,3,209630,ENSMUSG00000026657,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13254,cg21136659,-0.00000481,0.0000108,-0.444237279,0.657180994,loss,ns,-0.0000091,0.0000184,-0.494769163,0.621113541,neg,ns,-0.001243112,0.005386831,-0.230768757,0.817646678,neg,ns,0.087434323,0.000101733,0.000185253,0.549156277,0.583293546,pos,ns,0.76013686,Gm44690,Gm44690_Promoter,7,69890695,69890744,69890695,69890696,50,-,CGTCCCATATGTTTGTGCAGCGCACAAGGAGGTTTCTTTAGAAAGCGCTG,Promoter (6-7kb),7,69883979,69884360,382,2,Gm44690-201,-6384,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,5,24,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23831,cg06169648,-0.00000125,0.00000182,-0.690123574,0.490632809,loss,ns,-0.00000153,0.00000308,-0.494757624,0.621121677,neg,ns,0.001614282,0.000903682,1.786339949,0.075021423,pos,ns,1.124814701,-0.0000106,0.0000311,-0.341951964,0.732618742,neg,ns,0.074561882,Gse1,Gse1_fiveUTR,8,120537395,120537444,120537395,120537396,50,-,CGACAGCAGCAGGTGTTTCTTGGCCGGGGCCCCGGAAGCTCCACCTCCCC,Promoter (<=1kb),8,120537429,120579326,41898,1,Gse1-202,0,Galnt2l-201;Gse1-206;Gse1-201;Gse1-203;Gse1-202,Galnt2l;Gse1;Gse1;Gse1;Gse1,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,2,382034,ENSMUSG00000031822,conserved gene and region,8,120537158,120537837,680,*,680,85,0.735294118,0.950360907,0.125,1.01E-73,CpGisland,TRUE,U1,Pr-A
15846,cg07423797,-0.0000382,0.00000998,-3.825733679,0.000157675,loss,ns,-0.00000839,0.000017,-0.494742556,0.621132303,neg,ns,-0.006628098,0.004968986,-1.3338935,0.183217904,neg,ns,0.737032088,-0.00011615,0.000170883,-0.679706756,0.497197387,neg,ns,0.738648688,Scube1,Scube1_Exon,15,83659025,83659074,83659025,83659026,50,-,CGTGTGCAGTCCTTCTGGTTTTGGGCAAGGTCAAAGCCGGGCCTGCAGTC,"Exon (Scube1-204/Scube1, exon 5 of 21)",15,83604999,83725021,120023,2,Scube1-204,65947,Scube1-204;Scube1-202;Scube1-201;Scube1-203;Scube1-205;Scube1-206,Scube1;Scube1;Scube1;Scube1;Scube1;Scube1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,8,64706,ENSMUSG00000016763,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3602,cg17642263,-0.0000594,0.0000064,-9.293354273,2.74E-18,loss,yes,0.00000537,0.0000109,0.49457937,0.621247379,pos,ns,-0.012114301,0.003183435,-3.805418237,0.000170562,neg,ns,3.768116944,0.0000094,0.000109478,0.085886409,0.93161216,pos,ns,0.900065343,Gm12067,Gm12067_Intron,11,24694104,24694153,24694104,24694105,50,-,CGCAATATGGGGAAAAAAAAGCAGGGCATCTGGTTCACCAGATATGCATA,"Intron (Gm12068-201/Gm12068-201, intron 2 of 3)",11,24552438,24553962,1525,2,Gm12067-201,-140191,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,58,100417843,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26676,cg14747475,-0.00000903,0.00000325,-2.776665402,0.005826128,loss,ns,-0.00000273,0.00000553,-0.494566854,0.621256206,neg,ns,-0.001769514,0.001618772,-1.09312118,0.275189316,neg,ns,0.560368432,-0.00003,0.0000557,-0.538254485,0.590787615,neg,ns,0.934999798,Fry,Fry_Exon,5,150496192,150496241,150496240,150496241,50,+,GGAAGCAGTTCTGATGATGAGGTCCAGACACTACTGAATATTTATTTCCG,"Exon (Fry-201/Fry, exon 61 of 61)",5,150259767,150497753,237987,1,Fry-201,236425,Fry-201;Fry-218;Fry-212;Fry-203;Fry-206;Fry-213;Fry-207,Fry;Fry;Fry;Fry;Fry;Fry;Fry,0;0;0;0;0;6086;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,320365,ENSMUSG00000056602,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21796,cg22018000,-0.0000326,0.00000583,-5.588271393,5.03E-08,loss,yes,0.0000049,0.00000991,0.494565872,0.621256898,pos,ns,-0.007055696,0.002903352,-2.430189294,0.015658216,neg,ns,1.80525772,-0.0000493,0.0000998,-0.494193637,0.621519431,neg,ns,0.866200907,Lmo1,Lmo1_Intron,7,109167636,109167685,109167684,109167685,50,-,TTATTATCTTTCAGAAGTGCAACATGAAAGCCCTGCAGCCCAGCAGAGCG,"Intron (Lmo1-201/Lmo1, intron 1 of 3)",7,109138572,109170519,31948,2,Lmo1-201,2834,Lmo1-201;Lmo1-202;Lmo1-203,Lmo1;Lmo1;Lmo1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,66,109594,ENSMUSG00000036111,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26419,cg04296683,-0.00000155,0.00000197,-0.785106545,0.432990694,loss,ns,0.00000166,0.00000335,0.494370194,0.621394902,pos,ns,0.002664334,0.00098139,2.714857205,0.007001908,pos,ns,2.154783572,-0.000124176,0.0000337,-3.679284535,0.000275707,neg,ns,0.959177075,Lrch2,Lrch2_Exon,X,147480505,147480554,147480505,147480506,50,+,CGTGGCCTTATATGATTGGCTAAATGGCAAAGAACAACCCCATCCATCAG,"Exon (Lrch2-206/Lrch2, exon 13 of 15)",20,147470375,147512162,41788,2,Lrch2-206,31608,Lrch2-206;Lrch2-203;Lrch2-202;Lrch2-201;Lrch2-204;Lrch2-205,Lrch2;Lrch2;Lrch2;Lrch2;Lrch2;Lrch2,0;0;0;0;0;22916,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,210297,ENSMUSG00000031290,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25006,cg09489089,-0.0000014,0.00000879,-0.159471868,0.873400971,loss,ns,0.00000738,0.0000149,0.49427282,0.62146358,pos,ns,-0.010385881,0.00437316,-2.37491473,0.01816123,neg,ns,1.740854751,0.000251602,0.000150393,1.672966384,0.09534271,pos,ns,0.81645566,Fgfr2,Fgfr2_Intron,7,131497374,131497423,131497422,131497423,50,-,TGTTATAATTTTCCCCAAGTAATCTCCTCCATTTTCCAGGCGCTCCAACG,"Intron (Fgfr2-217/Fgfr2, intron 2 of 6)",7,130162451,133123350,2960900,2,Fgfr2-217,1625927,Fgfr2-217;Gm45105-201,Fgfr2;Gm45105,0;-3471,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,58,79,14183,ENSMUSG00000030849,mapped to different genes,7,131497414,131497496,83,*,83,8,0.373493976,2.766666667,0.096385542,0.00000291,CpGisland,TRUE,U15,NS
7081,cg18344896,-0.00000125,0.00000235,-0.530627047,0.596057162,loss,ns,0.00000198,0.000004,0.494266676,0.621467914,pos,ns,0.000393817,0.001171777,0.33608523,0.737033962,pos,ns,0.1325125,-0.0000541,0.0000403,-1.341630149,0.180697891,neg,ns,0.947132722,Lsamp,Lsamp_Intron,16,40850285,40850334,40850285,40850286,50,-,CGAGAAATGAGAGAAATCATAATTATCAGGCCACTAAAATACATGAAACA,"Intron (Lsamp-207/Lsamp, intron 2 of 2)",16,39984361,40979709,995349,1,Lsamp-207,865924,Lsamp-207;Lsamp-206;Lsamp-208;Lsamp-210,Lsamp;Lsamp;Lsamp;Lsamp,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,23,268890,ENSMUSG00000061080,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5555,cg15044533,0.0000242,0.00000783,3.095065055,0.002147213,gain,ns,-0.00000657,0.0000133,-0.494240796,0.621486168,neg,ns,-0.0066907,0.003897059,-1.716858561,0.087003854,neg,ns,1.060461508,0.000339788,0.00013402,2.535357938,0.011724465,pos,ns,0.785938888,Pbx3,Pbx3_Intron,2,34253192,34253241,34253240,34253241,50,-,TAAAGGCTCTCAGTAAATTACACTCCCAGTAAATGACTGTAATTTACCCG,"Intron (Pbx3-202/Pbx3, intron 2 of 7)",2,34171457,34372038,200582,2,Pbx3-202,118797,Pbx3-202;Pbx3-201;Pbx3-210;Pbx3-206;Pbx3-207;Pbx3-209;Pbx3-204;Pbx3-205;Pbx3-203,Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,82,18516,ENSMUSG00000038718,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7395,cg15644076,-0.0000156,0.00000325,-4.78894536,0.0000026,loss,ns,0.00000273,0.00000553,0.494164177,0.621540211,pos,ns,-0.005271863,0.001618708,-3.256833855,0.001251464,neg,ns,2.902581717,0.00011994,0.0000557,2.1545971,0.031963462,pos,ns,0.927276681,Pou3f3,Pou3f3_Intergenic_upstream,1,42540306,42540355,42540306,42540307,50,-,CGCTAGACTGGGCATGCAGTTTTGCTCTGCAGATATTGTCGCTACCGATT,Distal Intergenic,1,42694925,42703176,8252,1,Pou3f3-202,-154619,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,37,18993,ENSMUSG00000045515,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21029,cg21624643,-0.00000227,0.00000105,-2.157002803,0.031773833,loss,ns,0.000000884,0.00000179,0.4939628,0.621682262,pos,ns,0.001159832,0.000524167,2.212716592,0.027645588,pos,ns,1.558374169,-0.0000375,0.000018,-2.081713138,0.038188828,neg,ns,0.964930231,Vrk1,Vrk1_Intergenic_downstream,12,106129333,106129382,106129333,106129334,50,-,CGCATCTCGATAATTAAGTCTTTGTTTATCAAAAAACAAGTTATATTAGG,Distal Intergenic,12,106030717,106075409,44693,1,Vrk1-204,98665,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,29,37,22367,ENSMUSG00000021115,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23653,cg03466412,0.000000651,0.00000345,0.188514475,0.850596717,gain,ns,0.0000029,0.00000587,0.493653696,0.621900331,pos,ns,0.000382824,0.00171853,0.222762484,0.82386707,pos,ns,0.084142856,-0.000015,0.0000591,-0.254153217,0.799545686,neg,ns,0.847737908,Scn5a,Scn5a_Exon,9,119521310,119521359,119521310,119521311,50,+,CGATGATCTTGATGAGTGTGTTCAGGGTGGGCCATGATTTGGCCAGCTTG,"Exon (Scn5a-201/Scn5a, exon 15 of 27)",9,119483408,119562678,79271,2,Scn5a-201,41319,Scn5a-201;Scn5a-202;Scn5a-203,Scn5a;Scn5a;Scn5a,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,6,20271,ENSMUSG00000032511,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16572,cg23489132,0.0000243,0.00000337,7.213674198,4.20E-12,gain,yes,-0.00000283,0.00000572,-0.493623856,0.621921384,neg,ns,0.003137305,0.001676838,1.870965227,0.062291802,pos,ns,1.205569107,-0.0000575,0.0000577,-0.997317588,0.319388206,neg,ns,0.076344778,Rpl31-ps16,Rpl31-ps16_Promoter,17,85489247,85489296,85489295,85489296,50,-,AAAATATTTATTGCTTTTGACAGTTCCACAAGGGGCAAAAATCCTTGTCG,Promoter (9-10kb),17,85498633,85499008,376,1,Rpl31-ps16-201,-9386,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,13,668850,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
10240,cg14922886,0.0000336,0.00000274,12.26670751,1.82E-28,gain,yes,-0.00000229,0.00000465,-0.493597227,0.621940173,neg,ns,0.002009373,0.001361656,1.475683559,0.141043827,pos,ns,0.850645918,0.0000195,0.0000468,0.415944193,0.677738635,pos,ns,0.063922909,Hoxa13,Hoxa13_fiveUTR,6,52260779,52260828,52260779,52260780,50,+,CGAGCCGCATGGAGAAGACCCCAGTGGCGCTGTTTTAAAAAGCCCCCAAG,Promoter (<=1kb),6,52257694,52260803,3110,2,Hoxa13-203,0,Hoxa13-203;Hoxa13-201;Hoxa13-202;Hoxa13-204;Hoxa13-205;Hoxa13-206,Hoxa13;Hoxa13;Hoxa13;Hoxa13;Hoxa13;Hoxa13,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,12,15398,ENSMUSG00000038203,mapped to different genes,6,52259987,52261198,1212,*,1212,176,0.764026403,1.001121681,0.145214522,1.45E-165,CpGisland,TRUE,U3,Pr-B
8744,cg17995270,0.0000187,0.0000118,1.59211655,0.112377659,gain,ns,0.00000986,0.00002,0.493462584,0.622035175,pos,ns,-0.014247825,0.005854126,-2.433808989,0.01550549,neg,ns,1.809514516,0.000338968,0.000201323,1.683703363,0.093245646,pos,ns,0.612490058,Tmem63b,Tmem63b_Exon,17,45663551,45663600,45663599,45663600,50,+,GCCGGATCATGTACATGAGCAGGCCTGGGATGCGCAGCAGGTCCATGGCG,"Exon (Gm16172-201/Gm16172-201, exon 1 of 2)",17,45660171,45686259,26089,2,Tmem63b-201,22659,Capn11-201;Capn11-202;Tmem63b-201;Tmem63b-208;Tmem63b-203;Tmem63b-207,Capn11;Capn11;Tmem63b;Tmem63b;Tmem63b;Tmem63b,-4226;-4254;0;0;2854;22373,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,12,224807,ENSMUSG00000036026,conserved gene and region,17,45663471,45663654,184,*,184,20,0.614130435,1.163820367,0.108695652,2.52E-16,CpGisland,TRUE,NA,NRS
19309,cg18856868,0.00000175,0.00000105,1.668863725,0.096153964,gain,ns,-0.000000879,0.00000178,-0.493329431,0.622129132,neg,ns,0.001352545,0.000521899,2.59158188,0.010005677,pos,ns,1.999753517,-0.000041,0.0000179,-2.283225241,0.023093615,neg,ns,0.971060858,Foxp1,Foxp1_Intron,6,98968775,98968824,98968823,98968824,50,+,TTGAACTGATTTCACAAATACCCTTTCATTTCACTACTTCATTATGCTCG,"Intron (Foxp1-206/Foxp1, intron 9 of 17)",6,98925338,99266515,341178,2,Foxp1-206,297691,Foxp1-206;Foxp1-204;Foxp1-220;Foxp1-230;Foxp1-225;Foxp1-201;Foxp1-205;Foxp1-207;Foxp1-208;Foxp1-226;Foxp1-228;Foxp1-221;Foxp1-222;Foxp1-210;Foxp1-213,Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,87,108655,ENSMUSG00000030067,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20254,cg25076651,0.000013,0.00000349,3.732079315,0.00022586,gain,ns,0.00000292,0.00000592,0.493190704,0.622227028,pos,ns,0.0053195,0.001735319,3.065430426,0.00236478,pos,ns,2.62620918,-0.0000413,0.0000597,-0.69247737,0.489155981,neg,ns,0.131969282,Hoxc10,Hoxc10_Exon,15,102970995,102971044,102971043,102971044,50,+,CAAAATCGCAGAATGAAACTCAAGAAAATGAACCGAGAGAATCGGATCCG,"Exon (Hoxc10-201/Hoxc10, exon 2 of 2)",15,102966796,102971893,5098,1,Hoxc10-201,4199,Hoxc10-201;Hoxc5-202,Hoxc10;Hoxc5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,21,209448,ENSMUSG00000022484,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
5664,cg08146609,-0.0000366,0.000008,-4.580862342,0.00000672,loss,ns,0.0000067,0.0000136,0.493158354,0.622249859,pos,ns,-0.007188731,0.003981948,-1.805330077,0.071993133,neg,ns,1.142708926,0.000000036,0.000136939,0.000262908,0.999790399,pos,ns,0.498736859,Hdac9,Hdac9_Intron,12,34528970,34529019,34529018,34529019,50,-,AGAAATAGAACAATGGTCGGCCTGAGCCAAAAATAGGTCAAGCATGGCCG,"Intron (Hdac9-210/Hdac9, intron 3 of 26)",12,34095877,34917095,821219,2,Hdac9-210,388076,Hdac9-205;Hdac9-204;Hdac9-206;Hdac9-210;Hdac9-207;Hdac9-212;Hdac9-201;Hdac9-211;Hdac9-203;Hdac9-202;Hdac9-209,Hdac9;Hdac9;Hdac9;Hdac9;Hdac9;Hdac9;Hdac9;Hdac9;Hdac9;Hdac9;Hdac9,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,19,31,79221,ENSMUSG00000004698,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18570,cg25280906,0.000107825,0.0000151,7.12879986,7.15E-12,gain,yes,-0.0000127,0.0000257,-0.492803859,0.622500052,neg,ns,0.020174495,0.007527977,2.679935784,0.007757143,pos,ns,2.110298199,-0.000456228,0.000258887,-1.762270805,0.079009031,neg,ns,0.258492715,Hoxb6,Hoxb6_Intron,11,96296818,96296867,96296818,96296819,50,+,CGCTCATAAATACCTCTGGGCTTAGATAAGAGCGATGAGGCGCTATTTTC,"Intron (Hoxb6-202/Hoxb6, intron 1 of 2)",11,96292476,96301569,9094,1,Hoxb6-202,4342,Hoxb6-202;Hoxb6-201,Hoxb6;Hoxb6,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,16,15414,ENSMUSG00000000690,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
1519,cg26828026,0.0000118,0.00000614,1.924005677,0.055269204,gain,ns,0.00000514,0.0000104,0.492679541,0.622587803,pos,ns,-0.005674517,0.00305734,-1.856030996,0.06439793,neg,ns,1.191128089,0.00027397,0.000105142,2.605723697,0.009610506,pos,ns,0.843826185,Gm11819,Gm11819_Intergenic_upstream,4,13408546,13408595,13408546,13408547,50,+,CGAAGTGCGAGTGTGAAATTTATCTTTGATCAGCACCTCCTTGCCAGATT,Distal Intergenic,4,13444770,13445141,372,1,Gm11819-201,-36175,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,19,22,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9495,cg21658772,0.00000768,0.00000354,2.171726048,0.030634267,gain,ns,-0.00000296,0.00000601,-0.492670466,0.622594209,neg,ns,-0.000878556,0.001760032,-0.499170355,0.618013428,neg,ns,0.209002089,-0.0000283,0.0000605,-0.46776499,0.640281327,neg,ns,0.939553162,Fam120a,Fam120a_Exon,13,48910212,48910261,48910212,48910213,50,-,CGAGGTACCGAGGAAAACAAACAATGGATTGTTACAGTACATACATTCTG,"Exon (Fam120a-201/Fam120a, exon 10 of 18)",13,48879219,48968017,88799,2,Fam120a-201,57756,Fam120a-201,Fam120a,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,8,218236,ENSMUSG00000038014,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22806,cg25889011,0.0000366,0.00000291,12.55658863,1.62E-29,gain,yes,0.00000244,0.00000495,0.492544642,0.622683029,pos,ns,0.00421363,0.001449151,2.907655194,0.003904262,pos,ns,2.408461006,0.0000866,0.0000498,1.737441099,0.083302499,pos,ns,0.08841986,Dmbx1,Dmbx1_Intergenic_upstream,4,115963227,115963276,115963275,115963276,50,+,TCATAATTGATTGACTCTATTTGCCGGATTGGGACTTCAAAGCGCCGGCG,Distal Intergenic,4,115915120,115939926,24807,2,Dmbx1-202,-23301,Faah-202,Faah,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,15,42,140477,ENSMUSG00000028707,mapped to different genes,4,115962737,115963443,707,*,707,80,0.684582744,0.96711865,0.113154173,1.72E-65,CpGisland,TRUE,U3,Pr-B
8063,cg17152918,0.0000206,0.00000355,5.806657185,1.58E-08,gain,yes,0.00000297,0.00000602,0.492467235,0.622737674,pos,ns,0.006504631,0.001764969,3.685407056,0.000269436,pos,ns,3.569545149,-0.000149737,0.0000607,-2.466960737,0.014166868,neg,ns,0.078969285,Pax5,Pax5_Promoter,4,44710749,44710798,44710749,44710750,50,+,CGTGAAATGATTAAGGAACTAAAGAGCTTCTCGCCATGTGAGATCATGTC,Promoter (<=1kb),4,44524757,44710487,185731,2,Pax5-201,-262,Pax5-201;Pax5-202;Pax5-203;Pax5-204;Pax5-205;Pax5-207;Pax5-206;Pax5-209;Pax5-210;Pax5-212;Pax5-213;Pax5-214;Pax5-215,Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5,0;0;0;0;0;0;0;0;0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,10,45,18507,ENSMUSG00000014030,conserved gene but different region,4,44710639,44710987,349,*,349,27,0.601719198,0.855004083,0.077363897,8.51E-18,CpGisland,TRUE,NA,NRS
7633,cg21385340,-0.00000142,0.0000025,-0.566716137,0.571317136,loss,ns,0.00000209,0.00000425,0.492380119,0.622799176,pos,ns,0.001214592,0.001245395,0.975266607,0.330188441,pos,ns,0.481238135,-0.0000838,0.0000428,-1.955750801,0.05139249,neg,ns,0.94004625,Emc2,Emc2_Exon,15,43507624,43507673,43507672,43507673,50,+,TTTATTAATGTCAACCCACAGGCTGCAAGAAAGCGTAAGATTGCCATTCG,"Exon (Emc2-201/Emc2, exon 6 of 11)",15,43477229,43527763,50535,1,Emc2-201,30395,Emc2-201,Emc2,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,66736,ENSMUSG00000022337,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5064,cg09588961,-2.31E-08,0.00000107,-0.021546543,0.982823538,loss,ns,-0.000000898,0.00000182,-0.492337953,0.622828944,neg,ns,-0.000012,0.000534314,-0.022489464,0.982071985,neg,ns,0.007856677,0.0000121,0.0000184,0.659656455,0.50996408,pos,ns,0.026231482,Fosl2,Fosl2_fiveUTR,5,32136686,32136735,32136686,32136687,50,+,CGGCCCCCACCGCGGATCATGTACCAGGATTATCCCGGGAACTTTGACAC,Promoter (<=1kb),5,32135801,32157842,22042,1,Fosl2-201,885,Fosl2-201;Fosl2-202,Fosl2;Fosl2,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,8,14284,ENSMUSG00000029135,conserved gene and region,5,32136243,32136838,596,*,596,67,0.686241611,0.96036556,0.112416107,9.84E-55,CpGisland,TRUE,U1,Pr-A
24463,cg22043637,-0.00000836,0.00000823,-1.015917564,0.310460872,loss,ns,0.00000688,0.000014,0.492331887,0.622833227,pos,ns,-0.005803875,0.004095093,-1.417275329,0.157406691,neg,ns,0.80297681,0.0000989,0.00014083,0.702222778,0.483067159,pos,ns,0.85078456,Ago1,Ago1_threeUTR,4,126439525,126439574,126439573,126439574,50,+,AGAGTATCCTGGTGAACCTGCACGGCTTTGGCCAGGGCCTGGGGGTCCCG,3' UTR,4,126435012,126468421,33410,2,Ago1-207,28847,Ago1-207;Ago1-201;Ago1-206;Ago1-202;Ago1-205;Ago1-204,Ago1;Ago1;Ago1;Ago1;Ago1;Ago1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,11,13,236511,ENSMUSG00000041530,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12451,cg05662644,0.0000376,0.00000903,4.167824219,0.0000399,gain,ns,0.00000755,0.0000153,0.492291206,0.622861948,pos,ns,0.014343701,0.004492705,3.192664689,0.001554396,pos,ns,2.808438244,-0.000403042,0.000154504,-2.608619472,0.009531335,neg,ns,0.16429389,Onecut2,Onecut2_Intron,18,64349345,64349394,64349393,64349394,50,-,TTAAGGAAACCACATAGTTAAAGACCCTCGTTCAATAGATTTACCCTTCG,"Intron (Onecut2-201/Onecut2, intron 1 of 1)",18,64340020,64400987,60968,1,Onecut2-201,9325,Onecut2-201,Onecut2,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,19,225631,ENSMUSG00000045991,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5486,cg13078590,-0.0000184,0.00000883,-2.082639511,0.038103626,loss,ns,-0.00000739,0.000015,-0.492274833,0.622873508,neg,ns,-0.004939341,0.004396274,-1.123529114,0.262082153,neg,ns,0.581562552,-0.0000503,0.000151187,-0.332707857,0.739579696,neg,ns,0.845536991,Mvb12b,Mvb12b_Intron,2,34065897,34065946,34065945,34065946,50,+,TTGTCATTTTCTGTAATTAATGTTAAGGAAGACGCCTTCCTGATGGTTCG,"Intron (C230014O12Rik-201/C230014O12Rik-201, intron 1 of 3)",2,33729953,33887946,157994,2,Mvb12b-201,-177951,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,28,47,72543,ENSMUSG00000038740,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6568,cg17759270,-0.00000149,0.0000053,-0.281611339,0.778429435,loss,ns,0.00000443,0.00000901,0.492252829,0.622889043,pos,ns,-0.007743378,0.002639273,-2.933905858,0.003597019,neg,ns,2.444057223,0.0000297,0.0000908,0.327695007,0.743363475,pos,ns,0.837880016,Zfp536,Zfp536_Intron,7,37745647,37745696,37745695,37745696,50,-,GCCGAGATCATCAAACTCATTTCACATAAGACAACGAATTTAACCACCCG,"Intron (Zfp536-202/Zfp536, intron 1 of 6)",7,37479104,37769624,290521,2,Zfp536-202,23928,Zfp536-202;Zfp536-201;Zfp536-203;Zfp536-206;Zfp536-209;Zfp536-208;Zfp536-205;Zfp536-207,Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,73,112,243937,ENSMUSG00000043456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1635,cg09619561,0.00000018,0.00000215,0.083811676,0.93326026,gain,ns,-0.0000018,0.00000365,-0.492224592,0.622908979,neg,ns,-0.000833518,0.001069242,-0.779541277,0.436255652,neg,ns,0.360258934,0.0000351,0.0000368,0.953371453,0.341144679,pos,ns,0.951324656,Zfp521,Zfp521_Intron,18,13943691,13943740,13943739,13943740,50,-,CAGTGGTAAAGTAAAACTCTGTCGCTCTCTGCTCCCAATAGTGTCCATCG,"Intron (Zfp521-201/Zfp521, intron 2 of 7)",18,13687013,13972787,285775,2,Zfp521-201,29047,Zfp521-201;Zfp521-204;Zfp521-203;Zfp521-202,Zfp521;Zfp521;Zfp521;Zfp521,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,81,225207,ENSMUSG00000024420,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15149,cg06963053,0.00000434,0.00000146,2.960902979,0.003304233,gain,ns,0.00000122,0.00000249,0.492084905,0.623007607,pos,ns,0.001537003,0.000728812,2.108915104,0.03575372,pos,ns,1.446678769,-0.0000234,0.0000251,-0.932902474,0.351596346,neg,ns,0.012658665,Cerkl,Cerkl_Promoter,2,79456911,79456960,79456911,79456912,50,+,CGTGACCTGCCCATTTGTATGCCGCGGAGCGCTCCATTCCGGCCCCTTTG,Promoter (<=1kb),2,79338569,79456785,118217,2,Cerkl-210,-126,Cerkl-210;Neurod1-201,Cerkl;Neurod1,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,13,15,228094,ENSMUSG00000075256,mapped to different genes,2,79456843,79457022,180,*,180,14,0.622222222,0.830039526,0.077777778,1.72E-09,CpGisland,TRUE,NA,NRS
27409,cg07727941,0.0000427,0.00000873,4.892356237,0.0000016,gain,yes,-0.00000729,0.0000148,-0.491715116,0.623268735,neg,ns,0.0073106,0.004344468,1.682737773,0.093432703,pos,ns,1.029501087,-0.000299021,0.000149406,-2.001401674,0.046220414,neg,ns,0.017194454,Fam78b,Fam78b_Exon,1,167001637,167001686,167001637,167001638,50,+,CGCCACCATCGACCAGTGCCCCACGCGCATCGAGGAGACCTCGCCCATCG,Promoter (<=1kb),1,167001417,167091302,89886,1,Fam78b-205,220,Fam78b-205;Fam78b-206;Fam78b-204;Fam78b-202;Fam78b-201;Fam78b-203,Fam78b;Fam78b;Fam78b;Fam78b;Fam78b;Fam78b,0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,9,226610,ENSMUSG00000060568,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
18945,cg12939690,-0.0000778,0.0000168,-4.635616928,0.00000525,loss,ns,-0.000014,0.0000285,-0.49161538,0.623339172,neg,ns,-0.009964472,0.008351753,-1.193099478,0.233742746,neg,ns,0.631261857,0.000133506,0.000287216,0.464828968,0.642380259,pos,ns,0.692584717,Nfia,Nfia_Intron,4,98009148,98009197,98009196,98009197,50,+,GCAGCAGTCTGCTATCTGCAGGGTGTCTGAATTATAGCAGTCTATGTTCG,"Intron (Nfia-202/Nfia, intron 4 of 10)",4,97777608,98118871,341264,1,Nfia-202,231540,Nfia-202;Nfia-203;Nfia-205;Nfia-201;Nfia-204;Nfia-207;Nfia-206,Nfia;Nfia;Nfia;Nfia;Nfia;Nfia;Nfia,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,44,18027,ENSMUSG00000028565,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18042,cg00697942,0.0000173,0.00000553,3.135107566,0.001882473,gain,ns,0.00000462,0.00000939,0.491597426,0.623351852,pos,ns,-0.001880631,0.002752297,-0.683295113,0.494930745,neg,ns,0.305455567,0.000131892,0.0000947,1.393453663,0.164480883,pos,ns,0.865602349,Pola1,Pola1_Intron,X,93408358,93408407,93408358,93408359,50,+,CGGTGCATTTTTAGGCTTGAGTGGCTTAGGAGCAAACCAGCTGTGAAATT,"Intron (Pola1-201/Pola1, intron 35 of 36)",20,93304767,93632155,327389,2,Pola1-201,223748,Pola1-201,Pola1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,59,62,18968,ENSMUSG00000006678,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
886,cg17864122,-0.0000316,0.0000127,-2.481965608,0.013595429,loss,ns,-0.0000106,0.0000216,-0.491590378,0.62335683,neg,ns,-0.005006418,0.006327745,-0.791185187,0.429440842,neg,ns,0.367096654,-0.000263221,0.000217611,-1.209594236,0.227356256,neg,ns,0.532734855,Gm13221,Gm13221_Intron,2,9388546,9388595,9388546,9388547,50,+,CGTCAAAGTATTTGTATTGATGACATCTTGACAAGATACGAGTATGTTCA,"Intron (Gm13219-202/Gm13219-202, intron 2 of 3)",2,9270080,9270509,430,2,Gm13221-201,-118037,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,3,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24023,cg19935802,-0.00000289,0.000000982,-2.947331325,0.003448577,loss,ns,0.00000082,0.00000167,0.491541537,0.623391325,pos,ns,-0.0000268,0.00048862,-0.054897528,0.956255464,neg,ns,0.01942607,-0.00000322,0.0000168,-0.191887689,0.847955811,neg,ns,0.033603709,Cog7,Cog7_Exon,7,121981426,121981475,121981426,121981427,50,+,CGTGGTTCACCTCTTGGATGAACAGCTGCAGCTTCATCACCAGGGTGGCT,Promoter (<=1kb),7,121880033,121981711,101679,2,Cog7-203,236,Cog7-203;Cog7-201;Cog7-202,Cog7;Cog7;Cog7,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,233824,ENSMUSG00000034951,conserved gene and region,7,121981328,121981427,100,*,100,10,0.75,0.714285714,0.1,6.26E-08,CpGisland,TRUE,U1,Pr-A
15434,cg15583022,-0.00000195,0.000000869,-2.247865124,0.025287454,loss,ns,0.000000725,0.00000148,0.491540453,0.623392091,pos,ns,0.000611779,0.000432325,1.415091472,0.158045413,pos,ns,0.801218106,-0.0000128,0.0000149,-0.861512123,0.38962193,neg,ns,0.034418719,Arrdc3,Arrdc3_Exon,13,80884881,80884930,80884881,80884882,50,+,CGATGACTTAATTCCTAGCCCAAGAAGAATATAATGTTAAAACTGGTTAT,"Exon (1700023H06Rik-201/1700023H06Rik-201, exon 2 of 2)",13,80883384,80889643,6260,1,Arrdc3-202,1497,Arrdc3-202;Arrdc3-203;Arrdc3-201;Arrdc3-205,Arrdc3;Arrdc3;Arrdc3;Arrdc3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,8,105171,ENSMUSG00000074794,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
11834,cg20045830,-0.000218655,0.0000193,-11.33491137,3.78E-25,loss,yes,-0.0000161,0.0000328,-0.491500976,0.623419972,neg,ns,0.058680659,0.009601018,6.111920713,2.95E-09,pos,ns,8.529704288,-0.003010349,0.000330178,-9.117345762,9.93E-18,neg,yes,0.736581991,Uaca,Uaca_Intron,9,61033052,61033101,61033100,61033101,50,-,CTGCAGGAGCAGTTGGTATACTGGCTGCTCTTCAAGATCCATTAATCTCG,"Intron (Gm33699-201/Gm33699-201, intron 2 of 6)",9,60866145,60870130,3986,1,Uaca-204,166956,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,7,72565,ENSMUSG00000034485,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27736,cg08049042,-0.00000801,0.00000484,-1.654316793,0.09907528,loss,ns,-0.00000404,0.00000823,-0.491493081,0.623425548,neg,ns,0.002701628,0.00240993,1.121040179,0.263138424,pos,ns,0.579815731,-0.000251098,0.0000829,-3.029758089,0.002653508,neg,ns,0.911664269,Cdc42bpa,Cdc42bpa_Exon,1,180123912,180123961,180123960,180123961,50,-,TCTCTGTTGAAGCGCTCTCCATCCTGTACTCCAGCTAGCAAAGGCAGACG,"Exon (Cdc42bpa-204/Cdc42bpa, exon 22 of 37)",1,179960472,180163156,202685,1,Cdc42bpa-203,163440,Cdc42bpa-203;Cdc42bpa-204;Cdc42bpa-201;Cdc42bpa-202;Cdc42bpa-218;Cdc42bpa-207;Cdc42bpa-216;Cdc42bpa-212;Cdc42bpa-209;Cdc42bpa-214;Cdc42bpa-215,Cdc42bpa;Cdc42bpa;Cdc42bpa;Cdc42bpa;Cdc42bpa;Cdc42bpa;Cdc42bpa;Cdc42bpa;Cdc42bpa;Cdc42bpa;Cdc42bpa,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,10,226751,ENSMUSG00000026490,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6331,cg21977706,-0.0000134,0.00000883,-1.514024408,0.131038517,loss,ns,0.00000737,0.000015,0.491462951,0.623446829,pos,ns,0.002664867,0.004396211,0.606173703,0.544843017,pos,ns,0.263728611,-0.000217955,0.000151185,-1.441640303,0.150413288,neg,ns,0.543771946,Pknox2,Pknox2_threeUTR,9,36909642,36909691,36909690,36909691,50,+,AAGAGCCAAGAACGCATTATATTGGTGGCATGCTTGGGCAAGACTCCTCG,3' UTR,9,36890982,37083309,192328,2,Pknox2-207,173618,Pknox2-207;Pknox2-201;Pknox2-202;Pknox2-203;Pknox2-206,Pknox2;Pknox2;Pknox2;Pknox2;Pknox2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,47,208076,ENSMUSG00000035934,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23123,cg21838235,-0.00000064,0.00000176,-0.36244214,0.717268621,loss,ns,0.00000147,0.000003,0.491433298,0.623467774,pos,ns,0.001105316,0.000878244,1.258552092,0.209139158,pos,ns,0.679564645,-0.00000553,0.0000302,-0.183232189,0.854735621,neg,ns,0.952229794,Rnf220,Rnf220_Intron,4,117315048,117315097,117315048,117315049,50,+,CGTCAAATACATTATCCGTGTAATACACTTGTCTGGCTGGGGCCTCCCGC,"Intron (Rnf220-201/Rnf220, intron 2 of 14)",4,117271463,117497052,225590,2,Rnf220-201,181955,Rnf220-201;Rnf220-202;Rnf220-207,Rnf220;Rnf220;Rnf220,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,4,117314991,117315152,162,*,162,10,0.5,0.995085995,0.061728395,0.0000055,CpGisland,TRUE,U13,Hc-P
15496,cg09201274,0.000144743,0.0000164,8.825523059,8.14E-17,gain,yes,-0.0000137,0.0000279,-0.491230347,0.623611128,neg,ns,0.067423196,0.008162701,8.259912665,4.28E-15,pos,yes,14.36873093,-0.001340742,0.000280715,-4.776176384,0.00000276,neg,ns,0.450891138,Mpdz,Mpdz_Exon,4,81279699,81279748,81279747,81279748,50,+,TCTAGACTCTGCCCATTGACAGCAATGATCTGATCGCCCCTTTTCAGACG,"Exon (Mpdz-203/Mpdz, exon 47 of 47)",4,81278500,81442805,164306,2,Mpdz-203,163057,Mpdz-203;Mpdz-202;Mpdz-201;Mpdz-208;Mpdz-211;Mpdz-216;Mpdz-215;Mpdz-209;Mpdz-204,Mpdz;Mpdz;Mpdz;Mpdz;Mpdz;Mpdz;Mpdz;Mpdz;Mpdz,0;0;0;0;0;0;4951;12864;8323,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,3,17475,ENSMUSG00000028402,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14940,cg06807854,0.0000132,0.00000281,4.69973522,0.00000392,gain,ns,-0.00000234,0.00000477,-0.491185945,0.623642494,neg,ns,0.001435237,0.001396895,1.027447923,0.305010608,pos,ns,0.515685056,0.0000275,0.000048,0.572262447,0.567558948,pos,ns,0.107766097,Pax3,Pax3_Intron,1,78189516,78189565,78189516,78189517,50,-,CGGGCTGTGTCTAGATGAAAGTGAGAAGGACATAAAGGAGGCAATTGAGT,"Intron (Pax3-201/Pax3, intron 4 of 8)",1,78101267,78196838,95572,2,Pax3-201,7273,Pax3-201;Pax3-202;Pax3-203,Pax3;Pax3;Pax3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,17,18505,ENSMUSG00000004872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12933,cg15608939,0.0000435,0.0000042,10.36911647,8.00E-22,gain,yes,-0.0000035,0.00000713,-0.491179226,0.62364724,neg,ns,0.005748812,0.002089365,2.751464248,0.006282054,pos,ns,2.201898346,-0.0000166,0.0000719,-0.231365989,0.817183122,neg,ns,0.08856715,Ntn1,Ntn1_Intron,11,68399764,68399813,68399812,68399813,50,-,ACCTCTGTTCAGATTAGCCCGGGGGATGAATGCACCCATTATCCAGCCCG,"Intron (Ntn1-202/Ntn1, intron 2 of 7)",11,68209364,68400823,191460,2,Ntn1-202,1010,Ntn1-202,Ntn1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,6,18208,ENSMUSG00000020902,conserved gene but different region,11,68399783,68400438,656,*,656,66,0.704268293,0.820995146,0.100609756,1.95E-50,CpGisland,TRUE,U3,Pr-B
1063,cg20383231,0.0000983,0.00000628,15.65872867,4.01E-41,gain,yes,-0.00000524,0.0000107,-0.491117186,0.623691066,neg,ns,0.006070175,0.003124095,1.94301873,0.052918954,pos,ns,1.276388746,0.000132538,0.000107437,1.233634257,0.218273728,pos,ns,0.16940017,Esrp1,Esrp1_Exon,4,11386383,11386432,11386431,11386432,50,+,GGCCCCAGCAGTGATCCCAAAAAGCACCACCAAGTAATCCGGAGAGGCCG,Promoter (<=1kb),4,11357586,11386394,28809,2,Esrp1-207,0,Esrp1-201;Esrp1-204;Esrp1-203;Esrp1-202;Esrp1-207,Esrp1;Esrp1;Esrp1;Esrp1;Esrp1,0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,207920,ENSMUSG00000040728,conserved gene and region,4,11386422,11386502,81,*,81,8,0.703703704,1.280632411,0.098765432,0.00000241,CpGisland,TRUE,U3,Pr-B
5133,cg13786262,-0.00000198,0.00000244,-0.80990926,0.418613579,loss,ns,-0.00000204,0.00000415,-0.491029189,0.62375323,neg,ns,0.001741443,0.001214358,1.434044354,0.152567516,pos,ns,0.816537924,-0.00000802,0.0000418,-0.192041332,0.847835564,neg,ns,0.948454146,Pik3ca,Pik3ca_Exon,3,32454392,32454441,32454392,32454393,50,-,CGAATTATGTCCTCTGCAAAAAGGCCACTGTGGTTGAATTGGGAGAACCC,"Exon (Pik3ca-203/Pik3ca, exon 16 of 21)",3,32397671,32466107,68437,1,Pik3ca-203,56721,Pik3ca-203;Pik3ca-201;Pik3ca-202,Pik3ca;Pik3ca;Pik3ca,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,4,18706,ENSMUSG00000027665,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16663,cg03296938,-0.0000722,0.000012,-5.998781063,5.54E-09,loss,yes,-0.00001,0.0000204,-0.491011533,0.623765704,neg,ns,-0.012912886,0.005987479,-2.156648081,0.031801732,neg,ns,1.497549222,0.0000109,0.000205909,0.052976504,0.95778475,pos,ns,0.885670967,Srbd1,Srbd1_Intron,17,85889770,85889819,85889818,85889819,50,+,TCCATAAACATTTAAAATGTGGTTACCTTGATTTCCATGTCTCATTTTCG,"Intron (Gm30117-201/Gm30117-201, intron 2 of 2)",17,85984947,86040364,55418,2,Srbd1-204,150545,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,6,78586,ENSMUSG00000024135,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24171,cg18833170,0.0000839,0.0000218,3.842030302,0.000148008,gain,ns,-0.0000182,0.0000371,-0.490971347,0.623794093,neg,ns,0.029113435,0.010867149,2.679031664,0.007777635,pos,ns,2.109152433,-0.001061493,0.00037372,-2.840340193,0.004804661,neg,ns,0.397069836,Tnrc6a,Tnrc6a_threeUTR,7,123162703,123162752,123162703,123162704,50,-,CGATTTCGCCACCAGGAACACAAACAGCTTCTAAAGAGGGGTCAGCATTT,3' UTR,7,123124177,123193987,69811,1,Tnrc6a-203,38526,Tnrc6a-209;Tnrc6a-203;Tnrc6a-201;Tnrc6a-210,Tnrc6a;Tnrc6a;Tnrc6a;Tnrc6a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,TRUE,FALSE,threeUTR,5,24,233833,ENSMUSG00000052707,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2935,cg07658653,0.00000303,0.0000021,1.439927464,0.150897006,gain,ns,0.00000175,0.00000357,0.490958476,0.623803187,pos,ns,0.00000846,0.00104691,0.008083347,0.993555692,pos,ns,0.002807784,-0.0000261,0.000036,-0.72561308,0.468623419,neg,ns,0.941451919,Ehbp1,Ehbp1_Intron,11,22078832,22078881,22078880,22078881,50,+,TGAGTAGCTAGTGGAGTAAGCTTATTGAGAAGTGTCACATCACTAAGTCG,"Intron (Ehbp1-201/Ehbp1, intron 14 of 23)",11,22005828,22285838,280011,2,Ehbp1-201,206957,Ehbp1-201;Ehbp1-202;Ehbp1-207,Ehbp1;Ehbp1;Ehbp1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,34,45,216565,ENSMUSG00000042302,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6545,cg09722747,-0.0000273,0.00000833,-3.279768078,0.001157199,loss,ns,-0.00000694,0.0000141,-0.490903507,0.623842022,neg,ns,-0.00099033,0.004144086,-0.238974398,0.811283343,neg,ns,0.090827441,-0.000206002,0.000142515,-1.445479464,0.149333396,neg,ns,0.82008766,Zfp536,Zfp536_Intron,7,37660739,37660788,37660787,37660788,50,+,ACTTTCCACCGAACTGGACATATTTATTGAGACTCATAAGTTACTTCACG,"Intron (Zfp536-202/Zfp536, intron 3 of 6)",7,37479104,37769624,290521,2,Zfp536-202,108836,Zfp536-202;Zfp536-201;Zfp536-203;Zfp536-206;Zfp536-209;Zfp536-208,Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,73,112,243937,ENSMUSG00000043456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19541,cg09661809,0.000099,0.0000118,8.373660431,1.95E-15,gain,yes,0.00000986,0.0000201,0.490703334,0.623983451,pos,ns,0.017691351,0.005884428,3.006469207,0.002859113,pos,ns,2.543768705,-0.000283918,0.000202365,-1.402997367,0.161618381,neg,ns,0.188544824,Tpbgl,Tpbgl_Exon,7,99625654,99625703,99625654,99625655,50,+,CGGTTTAGGTAGAGCACCATGAGGAAGATGAGGCCGATGAGTGCCAGCAC,"Exon (Tpbgl-201/Tpbgl, exon 1 of 1)",7,99624082,99627103,3022,2,Tpbgl-201,1400,Tpbgl-201,Tpbgl,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,100503386,ENSMUSG00000096606,conserved gene and region,7,99625503,99626814,1312,*,1312,156,0.702743902,0.967162994,0.118902439,7.24E-131,CpGisland,TRUE,U3,Pr-B
4755,cg26811580,0.00000109,0.00000125,0.871073007,0.384388355,gain,ns,-0.00000104,0.00000212,-0.4906897,0.623993084,neg,ns,0.000000479,0.00062081,0.000772151,0.999384409,pos,ns,0.00026743,0.0000337,0.0000213,1.576610534,0.115905067,pos,ns,0.03167397,Ier5l,Ier5l_Intergenic_downstream,2,30470741,30470790,30470789,30470790,50,-,CACATTCTCCCACTCTGAGGTCATTCCGTAGGTGGTCAGAGGGGAGCGCG,Distal Intergenic,2,30471537,30474219,2683,2,Ier5l-201,3478,Ier5l-201,Ier5l,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,13,72500,ENSMUSG00000089762,conserved gene and region,2,30470658,30470883,226,*,226,15,0.646017699,0.664184953,0.066371681,3.62E-09,CpGisland,TRUE,U3,Pr-B
11800,cg09772534,0.0000633,0.00000981,6.452084841,4.24E-10,gain,yes,-0.00000818,0.0000167,-0.490688961,0.623993607,neg,ns,0.018355887,0.004883946,3.758413133,0.0002043,pos,ns,3.689731294,-0.000284604,0.000167958,-1.694490555,0.091176388,neg,ns,0.130205142,Synpo,Synpo_Intron,18,60632960,60633009,60632960,60632961,50,+,CGGTTTCCAGGAAAGAAGAGAGAGGCGGAAAAGTTAACTTTCCGCCACCC,"Intron (Synpo-209/Synpo, intron 1 of 2)",18,60600209,60648319,48111,2,Synpo-209,15310,Synpo-206;Synpo-209;Synpo-207;Synpo-210,Synpo;Synpo;Synpo;Synpo,-3107;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,3,104027,ENSMUSG00000043079,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
526,cg00110098,-0.0000473,0.00000927,-5.104318215,0.00000058,loss,yes,-0.00000772,0.0000157,-0.490659864,0.624014166,neg,ns,-0.007874984,0.004611323,-1.707749583,0.088683964,neg,ns,1.052154902,-0.000148417,0.000158583,-0.935894057,0.350056223,neg,ns,0.712425525,St18,St18_Intron,1,6800276,6800325,6800276,6800277,50,+,CGCCTCTCTGGTGATCTGCACTTAATAGGAATATTTTAAACTATGTAGCT,"Intron (St18-208/St18, intron 7 of 23)",1,6487231,6860934,373704,1,St18-208,313045,St18-208;St18-204;St18-201;St18-206;St18-203;St18-210;St18-212;St18-207;St18-213;St18-205,St18;St18;St18;St18;St18;St18;St18;St18;St18;St18,0;0;0;0;0;0;0;0;0;-2466,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,20,240690,ENSMUSG00000033740,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4468,cg15592596,0.00000313,0.00000206,1.520356974,0.129440555,gain,ns,-0.00000172,0.0000035,-0.490520821,0.624112415,neg,ns,0.001552267,0.001025572,1.513562947,0.13115556,pos,ns,0.882213293,-0.0000479,0.0000353,-1.35888817,0.175169882,neg,ns,0.04355503,Lep,Lep_Intergenic_upstream,6,28981415,28981464,28981415,28981416,50,-,CGAGCCAGTGTTTCCAGGGGAAACCTAATGACGCAATGACGTCAATGCAG,Distal Intergenic,6,29060220,29073877,13658,1,Lep-201,-78805,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,4,16846,ENSMUSG00000059201,mapped to different genes,6,28981385,28981694,310,*,310,26,0.651612903,0.79393223,0.083870968,4.58E-18,CpGisland,TRUE,U3,Pr-B
23379,cg09231361,-0.0000189,0.00000574,-3.284188451,0.001139806,loss,ns,-0.00000478,0.00000976,-0.490296812,0.624270716,neg,ns,-0.002756109,0.002858028,-0.964339633,0.335627328,neg,ns,0.474142684,-0.00000937,0.0000983,-0.095310345,0.924129906,neg,ns,0.77033125,Ptprf,Ptprf_Exon,4,118211372,118211421,118211372,118211373,50,-,CGAAGCTTGGTCAGCATGACGATGATGGTGGAATTGTGCTCCCATAGCAT,"Exon (Ptprf-201/Ptprf, exon 29 of 33)",4,118208213,118291405,83193,2,Ptprf-201,79984,Ptprf-201;Ptprf-202;Ptprf-206;Ptprf-203;Ptprf-204,Ptprf;Ptprf;Ptprf;Ptprf;Ptprf,0;0;0;0;-631,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,9,19268,ENSMUSG00000033295,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10595,cg00855091,0.00000705,0.00000354,1.991822992,0.047267532,gain,ns,-0.00000295,0.00000602,-0.490280585,0.624282183,neg,ns,-0.001776232,0.001762559,-1.007757629,0.314356776,neg,ns,0.502577175,0.000069,0.0000606,1.138134634,0.255943099,pos,ns,0.938903531,Faf2,Faf2_Exon,13,54648323,54648372,54648323,54648324,50,+,CGCAGCCGGGTCACTGACCCCGTTGGGGACATTGTTTCATTTATGCACTC,"Exon (Faf2-203/Faf2, exon 5 of 11)",13,54621784,54664063,42280,1,Faf2-203,26539,Faf2-203;Faf2-209;Faf2-201;Faf2-206;Faf2-205;Faf2-202;Faf2-208;Faf2-207,Faf2;Faf2;Faf2;Faf2;Faf2;Faf2;Faf2;Faf2,0;0;0;0;0;0;0;-3069,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,6,76577,ENSMUSG00000025873,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22312,cg12841266,0.000226245,0.00000964,23.47187093,9.85E-71,gain,yes,-0.00000803,0.0000164,-0.490267875,0.624291166,neg,ns,0.02214309,0.004797424,4.615620718,0.00000575,pos,ns,5.240589809,-0.0000914,0.000164983,-0.553938874,0.580020022,neg,ns,0.214871817,Lhfpl4,Lhfpl4_Exon,6,113193905,113193954,113193953,113193954,50,-,GGATCAGCACCATGGAGAGCAGCACGAAGAAGGCGGCCGCCTTGAAGGCG,Promoter (<=1kb),6,113175395,113193943,18549,2,Lhfpl4-202,0,Lhfpl4-201;Lhfpl4-202,Lhfpl4;Lhfpl4,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,7,269788,ENSMUSG00000042873,conserved gene and region,6,113193884,113194365,482,*,482,42,0.668049793,0.8053467,0.08713693,1.49E-29,CpGisland,TRUE,U13,Hc-P
19833,cg21645186,-0.00000594,0.00000294,-2.022756727,0.043956415,loss,ns,-0.00000245,0.00000499,-0.49025072,0.62430329,neg,ns,0.001642725,0.001462698,1.123078461,0.262273186,pos,ns,0.581246109,-0.0000308,0.0000503,-0.612901404,0.540390903,neg,ns,0.945820599,Med12,Med12_Exon,X,101286129,101286178,101286129,101286130,50,+,CGCAACATCTCTGTGGAGACAGCCAGTCTGGATGTCTATGCCAAGTACGT,"Exon (Med12-204/Med12, exon 27 of 46)",20,101274030,101297465,23436,1,Med12-204,12099,Med12-204;Med12-203;Med12-201;Med12-202;Med12-209;Med12-207;Med12-208,Med12;Med12;Med12;Med12;Med12;Med12;Med12,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,15,15,59024,ENSMUSG00000079487,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8757,cg06522774,0.0000242,0.00000931,2.600248443,0.009761814,gain,ns,0.00000775,0.0000158,0.490132665,0.624386725,pos,ns,0.009519022,0.004633451,2.054413123,0.040773796,pos,ns,1.389618853,-0.000229048,0.000159344,-1.437446421,0.151599783,neg,ns,0.24223251,Fgf8,Fgf8_Intergenic_downstream,19,45717817,45717866,45717865,45717866,50,+,TCCCCCTGCTGCACAACAAGCCCTTCTGATCTCTGTGAAAGGCAAACCCG,Distal Intergenic,19,45736971,45742684,5714,2,Fgf8-203,24818,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,18,14179,ENSMUSG00000025219,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9156,cg15024159,-0.00000045,0.00000135,-0.333789903,0.738763778,loss,ns,-0.00000112,0.00000229,-0.490110389,0.624402469,neg,ns,-0.0000918,0.000671284,-0.136790515,0.891285175,neg,ns,0.049983317,-0.0000464,0.0000231,-2.0110412,0.045186527,neg,ns,0.97140034,Cadm1,Cadm1_Intron,9,47275051,47275100,47275051,47275052,50,+,CGGCATTAAAGGATTTACTTTTCATGACCATAATTCACAGTTAATGTACA,"Intron (Gm31816-202/Gm31816-202, intron 5 of 6)",9,47530173,47853385,323213,1,Cadm1-204,-255073,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,77,54725,ENSMUSG00000032076,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13813,cg00049527,0.000056,0.0000241,2.320600299,0.020957128,gain,ns,0.0000201,0.000041,0.490063159,0.62443585,pos,ns,-0.017885583,0.012003619,-1.490015879,0.137236776,neg,ns,0.862529493,0.001051215,0.000412803,2.546527647,0.011363404,pos,ns,0.83313685,Robo1,Robo1_Exon,16,72993622,72993671,72993670,72993671,50,-,CTCTTCAGCTTAATAACTGGTTTATATTTTGTTTTGATTTTTCAGTCCCG,"Exon (Robo1-206/Robo1, exon 18 of 29)",16,72563700,73046095,482396,1,Robo1-206,429922,Robo1-206;Robo1-201;Robo1-207;Robo1-204,Robo1;Robo1;Robo1;Robo1,0;0;0;9867,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,8,19876,ENSMUSG00000022883,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24357,cg14916197,-0.00000196,0.00000368,-0.53369825,0.59393278,loss,ns,0.00000306,0.00000625,0.490001565,0.624479385,pos,ns,0.004661826,0.001829825,2.547689175,0.011326433,pos,ns,1.945906832,-0.000113779,0.0000629,-1.808102532,0.071559554,neg,ns,0.936790827,1110065P20Rik,1110065P20Rik_threeUTR,4,124849140,124849189,124849140,124849141,50,-,CGATGTGAAAACGTTACAGGTTCAGTACTTCCAAAGGAAGAAACCTCCAA,3' UTR,4,124849080,124850330,1251,2,1110065P20Rik-205,1141,1110065P20Rik-205;1110065P20Rik-204;1110065P20Rik-201;1110065P20Rik-202;1110065P20Rik-206;1110065P20Rik-203;Mtf1-202;Mtf1-201;Yrdc-201;Yrdc-202;Yrdc-203,1110065P20Rik;1110065P20Rik;1110065P20Rik;1110065P20Rik;1110065P20Rik;1110065P20Rik;Mtf1;Mtf1;Yrdc;Yrdc;Yrdc,0;1541;1620;1472;2007;1284;0;0;-1490;-2162;-2706,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,3,68920,ENSMUSG00000078570,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15560,cg26424112,0.0000108,0.00000896,1.203269813,0.229790031,gain,ns,0.00000746,0.0000152,0.489981301,0.624493707,pos,ns,0.01105724,0.004461377,2.478436732,0.013727949,pos,ns,1.862394337,-0.000255699,0.000153426,-1.666591278,0.096605698,neg,ns,0.868631179,Adgrl3,Adgrl3_Exon,5,81792259,81792308,81792307,81792308,50,-,TTTTCTGCATATCATCAATTTGCTTTTTACTCATGTTTCTTCTACTGTCG,"Exon (Adgrl3-235/Adgrl3, exon 1 of 1)",5,81020571,81796634,776064,1,Adgrl3-223,771688,Adgrl3-223;Adgrl3-203;Adgrl3-211;Adgrl3-217;Adgrl3-232;Adgrl3-207;Adgrl3-205;Adgrl3-206;Adgrl3-208;Adgrl3-212;Adgrl3-213;Adgrl3-214;Adgrl3-215;Adgrl3-216;Adgrl3-209;Adgrl3-218;Adgrl3-219;Adgrl3-204;Adgrl3-210;Adgrl3-201;Adgrl3-202;Adgrl3-220;Adgrl3-229;Adgrl3-235,Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3;Adgrl3,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,13,319387,ENSMUSG00000037605,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11204,cg18187161,0.0000656,0.00000731,8.97900381,2.70E-17,gain,yes,-0.00000608,0.0000124,-0.489946051,0.624518624,neg,ns,0.011622453,0.003638112,3.194638747,0.001544144,pos,ns,2.811312068,-0.000317079,0.000125114,-2.53431476,0.011758702,neg,ns,0.062364813,Satb2,Satb2_fiveUTR,1,56971823,56971872,56971823,56971824,50,-,CGGTCCCCAGATCTAGCGCCTTCAAAATAATAATTTGGGGTGGGGGTAGG,Promoter (<=1kb),1,56793986,56971858,177873,2,Satb2-202,0,Satb2-201;Satb2-202;Satb2-205;Satb2-203;Satb2-204,Satb2;Satb2;Satb2;Satb2;Satb2,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,9,33,212712,ENSMUSG00000038331,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
21486,cg03556525,-0.0000475,0.0000117,-4.049302477,0.000065,loss,ns,-0.00000976,0.0000199,-0.489831025,0.62459993,neg,ns,-0.00633406,0.0058348,-1.085565925,0.278514529,neg,ns,0.555152145,-0.00000851,0.000200658,-0.042394018,0.966211889,neg,ns,0.664133898,Bcl11b,Bcl11b_Intron,12,107952269,107952318,107952269,107952270,50,-,CGACTTTATGCATCTGTTATGGGTTAAAATAGCTTTTAAAAAATGTTTCG,"Intron (Bcl11b-201/Bcl11b, intron 3 of 3)",12,107910403,108003602,93200,2,Bcl11b-201,51284,Bcl11b-201;Bcl11b-202;Bcl11b-203,Bcl11b;Bcl11b;Bcl11b,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,39,58208,ENSMUSG00000048251,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17525,cg10604668,-0.0000198,0.00000682,-2.900898878,0.003987124,loss,ns,-0.00000568,0.0000116,-0.489758289,0.624651346,neg,ns,-0.004522992,0.003395939,-1.331882557,0.183877182,neg,ns,0.735472161,-0.000239272,0.000116786,-2.048806073,0.04132277,neg,ns,0.822992614,Nrxn1,Nrxn1_Exon,17,90701993,90702042,90701993,90701994,50,-,CGTGTCCAATGCCTGAGTGCTTTGTGGAGAAGGGGGGAGAAAGGAAATTA,"Exon (Nrxn1-207/Nrxn1, exon 7 of 23)",17,90033631,91088907,1055277,2,Nrxn1-202,386865,Nrxn1-202;Nrxn1-207;Nrxn1-216;Nrxn1-209;Nrxn1-201;Nrxn1-206;Nrxn1-208;Nrxn1-210;Nrxn1-224;Nrxn1-205;Nrxn1-203,Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,22,27,18189,ENSMUSG00000024109,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10078,cg21464565,0.000133445,0.0000173,7.724459683,1.57E-13,gain,yes,-0.0000144,0.0000293,-0.489756736,0.624652443,neg,ns,0.024925011,0.008598247,2.898848083,0.004012591,pos,ns,2.396575115,-0.000617815,0.000295693,-2.089381337,0.037488435,neg,ns,0.227257922,Gm28308,Gm28308_Intron,6,52163680,52163729,52163680,52163681,50,+,CGAGCGGGGTTATTCCACTGGAGAATAAATATAGCAGAAAAGATCAACTG,"Intron (Hoxa2-201/Hoxa2, intron 1 of 1)",6,52163359,52213339,49981,2,Gm28308-201,49610,Gm28308-201;Hoxa2-201,Gm28308;Hoxa2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,46,103,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
12411,cg21448578,0.0000974,0.0000172,5.679747275,3.11E-08,gain,yes,-0.0000143,0.0000291,-0.489708312,0.624686675,neg,ns,0.058562087,0.008537631,6.859290071,3.76E-11,pos,yes,10.4246517,-0.00241734,0.000293608,-8.233209011,5.14E-15,neg,yes,0.678417741,Fign,Fign_Promoter,2,64099281,64099330,64099329,64099330,50,-,TAAAGCAAACAATAACATTTGATCATGATGTCTACGAGATAATGTGCCCG,Promoter (1-2kb),2,63977337,64098038,120702,2,Fign-201,-1292,Fign-203;Fign-201;Fign-202;Fign-204,Fign;Fign;Fign;Fign,0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,12,84,60344,ENSMUSG00000075324,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25218,cg09053298,-0.00000079,0.000000522,-1.514037241,0.131035263,loss,ns,0.000000434,0.000000886,0.489676796,0.624708954,pos,ns,0.000281809,0.000259597,1.0855612,0.278516617,pos,ns,0.555148889,-0.0000116,0.00000893,-1.299485651,0.194742852,neg,ns,0.017734475,Arid1a,Arid1a_Promoter,4,133756774,133756823,133756822,133756823,50,-,ATGGCAAATATGGACTGAATCGTTGACATGGAAACCGGACTAAAGTCTCG,Promoter (<=1kb),4,133679941,133756769,76829,2,Arid1a-201,-54,Arid1a-202;Arid1a-205;Arid1a-201;Arid1a-203,Arid1a;Arid1a;Arid1a;Arid1a,0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,4,31,93760,ENSMUSG00000007880,mapped to different genes,4,133756709,133756989,281,*,281,24,0.629893238,0.867283951,0.085409253,6.62E-17,CpGisland,TRUE,U1,Pr-A
7885,cg13872695,0.0000242,0.0000083,2.920088671,0.00375587,gain,ns,0.00000691,0.0000141,0.489634743,0.624738683,pos,ns,0.015061854,0.004132995,3.644294778,0.000314267,pos,ns,3.502701036,-0.000438883,0.000142133,-3.087825868,0.002198589,neg,ns,0.805032508,Runx2,Runx2_threeUTR,17,44608217,44608266,44608265,44608266,50,-,GTAGTGAGTGGTGGCGGACATACCGAGGGACATGCCTGAGGTGACTGGCG,3' UTR,17,44495987,44736176,240190,2,Runx2-212,127910,Runx2-212;Runx2-214;Runx2-203;Runx2-202;Runx2-213;Runx2-204;Runx2-210;Runx2-211;Runx2-207;Runx2-201;Runx2-209,Runx2;Runx2;Runx2;Runx2;Runx2;Runx2;Runx2;Runx2;Runx2;Runx2;Runx2,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,10,20,12393,ENSMUSG00000039153,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3356,cg11568677,0.00000531,0.00000569,0.93265467,0.351724113,gain,ns,-0.00000474,0.00000967,-0.489558033,0.624792913,neg,ns,-0.006414399,0.00283393,-2.263428351,0.024300475,neg,ns,1.614385232,0.000197399,0.0000975,2.025466805,0.043675943,pos,ns,0.854768525,Gm11890,Gm11890_Intergenic_upstream,4,23811353,23811402,23811401,23811402,50,+,CATTGTCTAAATAAAAATTTCTAAACAAAAATCTCTCATCCTGTTAACCG,Distal Intergenic,4,23659928,23660344,417,2,Gm11890-201,-151009,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,15,32,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1877,cg16377657,0.00000187,0.00000182,1.027506068,0.304983286,gain,ns,-0.00000152,0.0000031,-0.489500353,0.624833692,neg,ns,0.00034589,0.000907602,0.381102712,0.703388084,pos,ns,0.152804994,-0.0000298,0.0000312,-0.956159668,0.339736615,neg,ns,0.092037344,Rgmb,Rgmb_fiveUTR,17,15830596,15830645,15830644,15830645,50,+,AACTTCAACAAAATAAACAACTCACCACAGGCATTCCCTTGTCTGCAGCG,Promoter (<=1kb),17,15820848,15830651,9804,2,Rgmb-202,6,Gm3292-201;Rgmb-201;Rgmb-206;Rgmb-202;Rgmb-207;Rgmb-204,Gm3292;Rgmb;Rgmb;Rgmb;Rgmb;Rgmb,2832;-4010;-4036;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,3,68799,ENSMUSG00000048027,conserved gene and region,17,15830644,15830860,217,*,217,23,0.746543779,0.761171267,0.105990783,1.88E-18,CpGisland,TRUE,U3,Pr-B
25869,cg00487538,-0.000000726,0.000000991,-0.732909236,0.46416761,loss,ns,0.000000824,0.00000168,0.489388823,0.624912544,pos,ns,-0.000530558,0.000493169,-1.07581364,0.282847166,neg,ns,0.548448169,0.000016,0.000017,0.942000623,0.346925822,pos,ns,0.026244185,Pax7,Pax7_Exon,4,139828669,139828718,139828669,139828670,50,+,CGAACTTGATTCTGAGCACGCGGCTAATCGAACTCACTAAACCTCAGAAA,"Exon (Pax7-201/Pax7, exon 4 of 9)",4,139737062,139833528,96467,2,Pax7-201,4810,Pax7-201;Pax7-202,Pax7;Pax7,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,27,18509,ENSMUSG00000028736,conserved gene and region,4,139828380,139828698,319,*,319,24,0.554858934,0.98279846,0.07523511,1.35E-15,CpGisland,TRUE,NA,NRS
14266,cg20140365,0.00000141,0.00000154,0.917252843,0.359723208,gain,ns,-0.00000128,0.00000262,-0.489268268,0.624997782,neg,ns,0.002881379,0.000767042,3.756479759,0.000205815,pos,ns,3.686524014,-0.0000776,0.0000264,-2.942261788,0.003503959,neg,ns,0.957544732,Chic2,Chic2_Intron,5,75013075,75013124,75013123,75013124,50,+,AGGTCTTTAGCACAATGCAACTTCCAATTTAAAAAGCACTGAATGTCTCG,"Intron (Chic2-201/Chic2, intron 3 of 5)",5,74997988,75044774,46787,2,Chic2-201,31650,Chic2-201;Chic2-202,Chic2;Chic2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,10,74277,ENSMUSG00000029229,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25068,cg09897697,0.00000352,0.00000233,1.508282874,0.132500586,gain,ns,0.00000194,0.00000396,0.489252944,0.625008617,pos,ns,-0.003149859,0.001159982,-2.715438565,0.006989918,neg,ns,2.15552795,0.000083,0.0000399,2.080548238,0.038296199,pos,ns,0.945431676,Trnau1ap,Trnau1ap_Exon,4,132328506,132328555,132328506,132328507,50,-,CGGTCTCCCCCATGGTGGCAAAGGCTCTGGAGATGAAGTTCTCATCCATG,Promoter (<=1kb),4,132311763,132329489,17727,2,Trnau1ap-203,934,Rcc1-202;Rcc1-201;Rcc1-203;Trnau1ap-203;Trnau1ap-201;Trnau1ap-210;Trnau1ap-212;Trnau1ap-211;Trnau1ap-205;Trnau1ap-207;Trnau1ap-206;Trnau1ap-204;Trnau1ap-209;Trnau1ap-202;Trnau1ap-208,Rcc1;Rcc1;Rcc1;Trnau1ap;Trnau1ap;Trnau1ap;Trnau1ap;Trnau1ap;Trnau1ap;Trnau1ap;Trnau1ap;Trnau1ap;Trnau1ap;Trnau1ap;Trnau1ap,17192;17150;23081;0;0;0;0;0;0;0;0;0;-3230;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,71787,ENSMUSG00000028898,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25374,cg10807269,0.000035,0.00000665,5.254383466,0.000000277,gain,yes,-0.00000553,0.0000113,-0.489165403,0.625070516,neg,ns,0.002243037,0.003311539,0.677339839,0.498695524,pos,ns,0.30216453,-0.000076,0.000113884,-0.667734737,0.504799725,neg,ns,0.69131722,Cacna1s,Cacna1s_Exon,1,136104575,136104624,136104623,136104624,50,-,CCTGGCCTCCAGCGGGGGACTGTATTGCCTGGGTGGAGGCTGCGGGAACG,"Exon (Cacna1s-204/Cacna1s, exon 29 of 44)",1,136052750,136119530,66781,1,Cacna1s-204,51825,Cacna1s-204;Cacna1s-202;Cacna1s-201;Cacna1s-206;Cacna1s-205,Cacna1s;Cacna1s;Cacna1s;Cacna1s;Cacna1s,0;0;0;0;-782,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,12292,ENSMUSG00000026407,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15096,cg15924973,0.00000836,0.00000898,0.930651446,0.352758056,gain,ns,0.00000746,0.0000153,0.489118759,0.625103499,pos,ns,0.002810254,0.004470592,0.628608787,0.530068085,pos,ns,0.275668344,-0.00020636,0.000153743,-1.342234496,0.180502135,neg,ns,0.477210712,Gm8345,Gm8345_Intergenic_upstream,13,79141648,79141697,79141696,79141697,50,-,CTCAAGGACCTTCGGTACAGCTTTCAGCAAAAAGGCATTCATCATTTCCG,Distal Intergenic,13,78953088,78954792,1705,2,Gm8345-201,-186905,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,13,666883,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25058,cg24470121,0.00000798,0.00000245,3.25600657,0.001254994,gain,ns,0.00000204,0.00000416,0.489024843,0.62516991,pos,ns,0.001152225,0.001220195,0.9442953,0.345754146,pos,ns,0.461232603,-0.0000614,0.000042,-1.463116846,0.144448553,neg,ns,0.090570377,Mfsd4a,Mfsd4a_Exon,1,132067688,132067737,132067688,132067689,50,+,CGCTGCCCAGCAGGAGGCAGAGCTGCTGCGAGAAGAAGACCCAGGAGATC,Promoter (<=1kb),1,132022806,132067911,45106,2,Mfsd4a-204,174,Mfsd4a-204;Mfsd4a-203;Mfsd4a-209;Mfsd4a-205;Mfsd4a-206;Mfsd4a-201;Mfsd4a-207;Mfsd4a-202;Mfsd4a-210,Mfsd4a;Mfsd4a;Mfsd4a;Mfsd4a;Mfsd4a;Mfsd4a;Mfsd4a;Mfsd4a;Mfsd4a,0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,213006,ENSMUSG00000059149,conserved gene and region,1,132067626,132068248,623,*,623,68,0.706260032,0.880547068,0.109149278,1.42E-54,CpGisland,TRUE,U3,Pr-B
9893,cg25149789,0.0000746,0.0000104,7.152596727,6.17E-12,gain,yes,-0.00000866,0.0000177,-0.488829142,0.625308307,neg,ns,0.016505141,0.00519116,3.179470508,0.001624551,pos,ns,2.789266674,-0.000511466,0.000178524,-2.864976489,0.004455248,neg,ns,0.136414866,S1pr3,S1pr3_Exon,13,51418946,51418995,51418946,51418947,50,-,CGTCTTGGAGAACCTGATGGTTTTGATTGCCATCTGGAAAAACAATAAAT,"Exon (S1pr3-201/S1pr3, exon 2 of 2)",13,51408639,51422797,14159,1,S1pr3-201,10307,S1pr3-201,S1pr3,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,13610,ENSMUSG00000067586,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15642,cg02419180,0.0000515,0.0000156,3.307795854,0.001050957,gain,ns,-0.0000129,0.0000265,-0.488791544,0.625334897,neg,ns,0.04392529,0.007753442,5.665262908,3.35E-08,pos,ns,7.474498762,-0.001260953,0.00026664,-4.729041583,0.00000343,neg,ns,0.438317252,Nfib,Nfib_Exon,4,82498387,82498436,82498435,82498436,50,+,AACAGGATCACCATGACTAGATCCAGACGCCAGACTTTGTCTGCCTGTCG,"Exon (Nfib-201/Nfib, exon 2 of 12)",4,82290173,82505308,215136,2,Nfib-201,6872,Nfib-201;Nfib-203;Nfib-202;Nfib-205;Nfib-206;Nfib-204;Nfib-207;Nfib-209;Nfib-210;Nfib-208;Nfib-212;Nfib-211,Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,14,66,18028,ENSMUSG00000008575,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6444,cg23480215,0.0000926,0.0000133,6.943108571,2.26E-11,gain,yes,-0.0000111,0.0000227,-0.488563064,0.625496495,neg,ns,0.031417612,0.006640812,4.730989414,0.0000034,pos,ns,5.468537123,-0.000627246,0.000228377,-2.746536688,0.006374885,neg,ns,0.431431193,Crmp1,Crmp1_Exon,5,37279712,37279761,37279760,37279761,50,+,CCCTGTGTACATCACCAAGGTCATGAGCAAGAGTGCAGCCGACATCATCG,"Exon (Crmp1-202/Crmp1, exon 8 of 14)",5,37242080,37292133,50054,1,Crmp1-202,37632,Crmp1-202;Crmp1-207;Crmp1-201;Crmp1-210;Crmp1-208;Crmp1-205;Crmp1-206;Crmp1-203,Crmp1;Crmp1;Crmp1;Crmp1;Crmp1;Crmp1;Crmp1;Crmp1,0;36978;0;32427;10971;-677;-706;-4138,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,12933,ENSMUSG00000029121,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14186,cg04293746,0.000104242,0.00000793,13.15258799,1.06E-31,gain,yes,0.00000658,0.0000135,0.488554698,0.625502412,pos,ns,-0.002907414,0.00394466,-0.737050783,0.461648923,neg,ns,0.335688174,0.0000521,0.000135657,0.383769799,0.701412148,pos,ns,0.172335705,Gm28230,Gm28230_Intron,2,74734656,74734705,74734704,74734705,50,-,GCGAGGACTGTAAATCTTTCCGGTTTATTGCTCTATGAACATATGCTCCG,"Intron (Hoxd3-203/Hoxd3, intron 1 of 2)",2,74726728,74747918,21191,1,Gm28230-201,7928,Gm28230-201;Hoxd3-203;Hoxd3-205;Hoxd3-202;Hoxd3-201,Gm28230;Hoxd3;Hoxd3;Hoxd3;Hoxd3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,23,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
18909,cg13901789,-0.0000581,0.0000114,-5.094812373,0.000000608,loss,yes,0.00000947,0.0000194,0.488401898,0.625610494,pos,ns,-0.001981041,0.005677591,-0.348922871,0.727384086,neg,ns,0.138236205,-0.000363518,0.000195252,-1.861787868,0.063579164,neg,ns,0.773627818,Dach1,Dach1_Intron,14,97868685,97868734,97868685,97868686,50,+,CGATTCATAAATCCTTAACTGCCTGAGATCGTTGAGAGCAAAACAAAGTA,"Intron (Dach1-201/Dach1, intron 6 of 10)",14,97786853,98169543,382691,2,Dach1-201,300809,Dach1-201;Dach1-202;Dach1-203,Dach1;Dach1;Dach1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,76,13134,ENSMUSG00000055639,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14286,cg24350085,0.00004,0.00000554,7.217830257,4.09E-12,gain,yes,0.0000046,0.00000942,0.488351326,0.625646267,pos,ns,0.010784474,0.002759051,3.908762571,0.000113971,pos,ns,3.943207259,-0.000122548,0.0000949,-1.291564201,0.197470255,neg,ns,0.114216522,Gsx2,Gsx2_Promoter,5,75071882,75071931,75071882,75071883,50,-,CGGGTAAGATGTGCCACAGACAGCAATATCACAATGCCACTCGGAGAAAA,Promoter (3-4kb),5,75075601,75077893,2293,1,Gsx2-201,-3719,Gsx2-201;Gsx2-202,Gsx2;Gsx2,-3670;-3671,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,5,10,14843,ENSMUSG00000035946,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
1572,cg04632369,-0.00006,0.00000849,-7.064391198,1.07E-11,loss,yes,0.00000704,0.0000144,0.488241213,0.625724162,pos,ns,-0.002478993,0.004225262,-0.586707671,0.557827055,neg,ns,0.253500426,-0.0000491,0.000145306,-0.338063833,0.735543911,neg,ns,0.923647944,Zfp521,Zfp521_Intron,18,13771957,13772006,13772005,13772006,50,+,CCAGGTTTCATGCAGTAGACAAAATGGCATTGTGGGATTACATTAGTTCG,"Intron (Zfp521-201/Zfp521, intron 5 of 7)",18,13687013,13972787,285775,2,Zfp521-201,200781,Zfp521-201;Zfp521-205;Zfp521-204,Zfp521;Zfp521;Zfp521,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,81,225207,ENSMUSG00000024420,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14296,cg00959249,0.00000795,0.00000435,1.829917523,0.068222446,gain,ns,0.0000036,0.00000738,0.488163166,0.625779375,pos,ns,0.00327571,0.002163335,1.514194382,0.130995426,pos,ns,0.88274387,-0.000167078,0.0000744,-2.245767889,0.025423086,neg,ns,0.042259372,Pcsk1,Pcsk1_Promoter,13,75089762,75089811,75089810,75089811,50,+,CTTAGTCCAGGTAGATCTGACGTCAAGAGATGGCTTTCGTCGATTTGACG,Promoter (<=1kb),13,75089826,75134861,45036,1,Pcsk1-201,-15,Pcsk1-201;Pcsk1-202,Pcsk1;Pcsk1,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,3,18548,ENSMUSG00000021587,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2655,cg22330612,-0.00000595,0.00000455,-1.309180918,0.191442632,loss,ns,0.00000377,0.00000773,0.488103698,0.625821447,pos,ns,0.000166772,0.002263465,0.073680011,0.941312523,pos,ns,0.026266163,-0.000243559,0.0000778,-3.128954298,0.001921093,neg,ns,0.779437444,Vcl,Vcl_Exon,14,21022048,21022097,21022096,21022097,50,+,CTGTGGCCAAGGTCAGAGAAGCCTTCCAACCTCAGGAGCCTGACTTCCCG,"Exon (Vcl-201/Vcl, exon 17 of 21)",14,20929398,21033676,104279,1,Vcl-201,92650,Vcl-201;Vcl-202,Vcl;Vcl,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,8,22330,ENSMUSG00000021823,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27184,cg16688207,0.0000182,0.00000523,3.483779863,0.000565562,gain,ns,-0.00000434,0.00000889,-0.488032289,0.625871967,neg,ns,0.004423981,0.002603858,1.699010472,0.090320455,pos,ns,1.044213884,-0.000168588,0.0000895,-1.882691854,0.060678444,neg,ns,0.061222633,Mafb,Mafb_Exon,2,160365811,160365860,160365811,160365812,50,+,CGGGCCAGCCGGGACACCTCCTGCTTAAGCTGCTCCACCTGCTGAATGAG,"Exon (Mafb-201/Mafb, exon 1 of 1)",2,160363703,160367065,3363,2,Mafb-201,1205,Mafb-201,Mafb,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,14,22,16658,ENSMUSG00000074622,conserved gene and region,2,160365737,160365821,85,*,85,9,0.670588235,0.942118227,0.105882353,0.000000223,CpGisland,TRUE,U3,Pr-B
13788,cg16270389,-0.00013592,0.0000193,-7.032272632,1.30E-11,loss,yes,-0.000016,0.0000328,-0.487911079,0.625957725,neg,ns,0.048509069,0.009619732,5.042663138,0.000000783,pos,ns,6.106445605,-0.002742777,0.000330822,-8.290800153,3.46E-15,neg,yes,0.50227926,Tcf7l1,Tcf7l1_Exon,6,72631013,72631062,72631061,72631062,50,+,TAGTTGTCCCGGGCTGACCAGGTTGGGTAGAGCTGCGAGTGAAGCTGCCG,"Exon (Tcf7l1-201/Tcf7l1, exon 10 of 12)",6,72626378,72789254,162877,2,Tcf7l1-201,158192,Tcf7l1-201;Tcf7l1-202;Tcf7l1-203;Tcf7l1-204,Tcf7l1;Tcf7l1;Tcf7l1;Tcf7l1,0;0;-743;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,3,21415,ENSMUSG00000055799,conserved gene and region,6,72630980,72631071,92,*,92,9,0.597826087,1.095238095,0.097826087,0.000000448,CpGisland,TRUE,U7,En-W
27872,cg01787715,-0.0000254,0.00000784,-3.240545564,0.001322686,loss,ns,-0.0000065,0.0000133,-0.48787099,0.62598609,neg,ns,-0.016068361,0.003901886,-4.11810068,0.000049,neg,ns,4.309399205,0.000240126,0.000134186,1.789508738,0.074508961,pos,ns,0.86842605,Ush2a,Ush2a_Intron,1,188891709,188891758,188891757,188891758,50,+,TCTGAGCATTTCATGTGTCCTACTTTTAAAATGCCCAGATGGTGGCTACG,"Intron (Ush2a-201/Ush2a, intron 60 of 70)",1,188263034,188965041,702008,1,Ush2a-201,628675,Ush2a-201,Ush2a,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,33,36,22283,ENSMUSG00000026609,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9913,cg03469153,0.0000878,0.0000101,8.714840919,1.79E-16,gain,yes,-0.00000835,0.0000171,-0.487792826,0.626041396,neg,ns,0.010477402,0.005014565,2.089393912,0.037487295,pos,ns,1.426115896,-0.000139889,0.00017245,-0.811183185,0.41788284,neg,ns,0.122780903,Shc3,Shc3_Exon,13,51567231,51567280,51567279,51567280,50,-,TCAGGTGGGACACCTTGTGGAGCAGGTGGCCCAGGCTGCCGGGCCCATCG,"Exon (Shc3-203/Shc3, exon 1 of 11)",13,51431041,51569487,138447,2,Shc3-203,2207,Shc3-201;Shc3-203;Shc3-204;Shc3-202,Shc3;Shc3;Shc3;Shc3,-147;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,4,20418,NA,mapped to different genes,13,51567270,51567855,586,*,586,59,0.660409556,0.923697569,0.100682594,3.57E-45,CpGisland,TRUE,U3,Pr-B
19719,cg13386381,-0.0000209,0.0000097,-2.15511011,0.031922942,loss,ns,-0.00000803,0.0000165,-0.487783817,0.62604777,neg,ns,-0.013736034,0.00482584,-2.846350904,0.004717186,neg,ns,2.326316961,0.000431663,0.00016596,2.600999913,0.009740922,pos,ns,0.773690511,Dglucy,Dglucy_Exon,12,100878587,100878636,100878635,100878636,50,-,TGCTGAGCACCAGCCGCTGGATCTGGTCCTTGCGGCTCTTCTGGGTGCCG,"Exon (Gpr68-203/Gpr68, exon 3 of 3)",12,100779086,100896981,117896,1,Dglucy-203,99501,Dglucy-203;Dglucy-205;Gpr68-203;Gpr68-201;Gpr68-202;Gpr68-206,Dglucy;Dglucy;Gpr68;Gpr68;Gpr68;Gpr68,0;11398;0;0;0;20862,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,217830,ENSMUSG00000021185,mapped to different genes,12,100878532,100878656,125,*,125,9,0.632,0.723938224,0.072,0.00000584,CpGisland,TRUE,U15,NS
13657,cg03724896,0.0000953,0.0000149,6.393972127,5.94E-10,gain,yes,-0.0000123,0.0000253,-0.487708578,0.626101009,neg,ns,0.024250635,0.007418301,3.269028228,0.00120049,pos,ns,2.920641579,-0.000532174,0.000255115,-2.086017707,0.037794296,neg,ns,0.249486647,Gm47812,Gm47812_Exon,13,71785053,71785102,71785053,71785054,50,+,CGACCGGGAGGACAACATTGTTATTTGAGTTAAGAAATCAATTTGTATCA,"Exon (Gm40999-202/Gm40999-202, exon 1 of 1)",13,71625028,71625143,116,1,Gm47812-201,160025,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,5,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10119,cg21718143,0.000126896,0.0000157,8.07983889,1.46E-14,gain,yes,-0.000013,0.0000267,-0.487663524,0.62613289,neg,ns,0.029171825,0.0078167,3.731987301,0.000225939,pos,ns,3.646008551,-0.000889187,0.000268816,-3.307795097,0.001050959,neg,ns,0.348201775,Gm28308,Gm28308_Intron,6,52194895,52194944,52194895,52194896,50,-,CGGCCTTGGACTTTGCGCTTCTAAAAGGTCTATACAGTGTCTTTTAGAGA,"Intron (Hoxaas3-202/Hoxaas3-202, intron 1 of 2)",6,52163359,52213339,49981,2,Gm28308-201,18395,Gm28308-201;Hoxa3-201;Hoxa3-203;Hoxa4-201,Gm28308;Hoxa3;Hoxa3;Hoxa4,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,46,103,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
7121,cg23443820,0.000000714,0.000000626,1.139904239,0.255206166,gain,ns,-0.000000519,0.00000106,-0.487663168,0.626133142,neg,ns,0.00044378,0.000311559,1.424386042,0.15534061,pos,ns,0.808714994,-0.0000184,0.0000107,-1.715589522,0.087236363,neg,ns,0.013495922,Pgrmc2,Pgrmc2_Exon,3,41082612,41082661,41082660,41082661,50,+,CTGCCTTTGGTCACGTCGAAGACTTTCCCATTGACCGCGAGCAGGATGCG,Promoter (<=1kb),3,41066326,41083046,16721,2,Pgrmc2-201,385,Pgrmc2-201,Pgrmc2,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,70804,ENSMUSG00000049940,conserved gene and region,3,41082421,41083754,1334,*,1334,150,0.706896552,0.903622619,0.112443778,9.67E-122,CpGisland,TRUE,U1,Pr-A
11096,cg20272169,-0.0000123,0.0000053,-2.31909154,0.021039899,loss,ns,-0.00000439,0.00000901,-0.487571762,0.626197825,neg,ns,-0.003570767,0.00263891,-1.353121868,0.177002633,neg,ns,0.752020273,0.000273591,0.0000908,3.014718979,0.002784665,pos,ns,0.861239013,Gm47178,Gm47178_Intergenic_downstream,9,56573196,56573245,56573196,56573197,50,+,CGACTCTTGGCATAGCAGCCGCGTTTTAAGGAGAAATAAACAAGGCCTGA,Distal Intergenic,9,56543756,56544097,342,1,Gm47178-201,29440,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,5,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
211,cg12609388,-0.00000046,0.0000007,-0.656421573,0.512039867,loss,ns,-0.00000058,0.00000119,-0.487435663,0.626294139,neg,ns,-0.001133659,0.000348453,-3.253405036,0.001266154,neg,ns,2.897513372,0.0000242,0.000012,2.017749055,0.044478692,pos,ns,0.985738463,Gm21992,Gm21992_Exon,19,4787784,4787833,4787784,4787785,50,+,CGCTTGTAGTAGGCATCGAGCGCTCCGTACGCGTTGTTGTAATACAATGA,"Exon (Rbm4-206/Rbm4, exon 3 of 4)",19,4742913,4811612,68700,2,Gm21992-203,23779,Gm21992-203;Gm21992-206;Gm21992-204;Gm21992-201;Gm21992-205;Gm21992-202;Rbm4-206;Rbm4-203;Rbm4-207;Rbm4-201;Rbm4-204;Rbm4-202;Rbm4-205,Gm21992;Gm21992;Gm21992;Gm21992;Gm21992;Gm21992;Rbm4;Rbm4;Rbm4;Rbm4;Rbm4;Rbm4;Rbm4,0;0;0;0;0;0;0;0;0;0;0;0;6050,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,27,48,102902673,ENSMUSG00000096370,mapped to different genes,19,4787732,4787814,83,*,83,8,0.662650602,0.878306878,0.096385542,0.00000291,CpGisland,TRUE,U10,Tr-S
13505,cg20136172,0.000000648,0.00000111,0.584262702,0.559468506,gain,ns,-0.000000919,0.00000189,-0.487379568,0.626333838,neg,ns,0.000616772,0.00055241,1.116511775,0.265067782,pos,ns,0.576643056,-0.0000448,0.000019,-2.358978488,0.01894541,neg,ns,0.974622838,Foxi3,Foxi3_Intergenic_downstream,6,70986825,70986874,70986873,70986874,50,-,ATCAGAGCCAGGGTCATTGTTGGGCTGAGGTAACATTAATTATTTTTCCG,Distal Intergenic,6,70956606,70961066,4461,1,Foxi3-201,30268,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,3,232077,ENSMUSG00000055874,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8400,cg11883809,-0.0000017,0.00000268,-0.63344736,0.526908599,loss,ns,-0.00000222,0.00000456,-0.487233667,0.626437099,neg,ns,0.000407184,0.001335692,0.30484842,0.760686164,pos,ns,0.118794483,0.0000295,0.0000459,0.641998596,0.521348541,pos,ns,0.94783047,Zeb2,Zeb2_Intron,2,45093151,45093200,45093151,45093152,50,+,CGTATATTTTGGTATTGCACAGCCTAGCATAAAATATAATTAGAGATGCA,"Intron (Zeb2-212/Zeb2, intron 3 of 10)",2,44983632,45117395,133764,2,Zeb2-212,24195,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219;Zeb2-211,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25816,cg13090788,0.0000679,0.000007,9.707535206,1.26E-19,gain,yes,-0.00000579,0.0000119,-0.486969824,0.626623852,neg,ns,0.010160324,0.003483715,2.916519529,0.003797931,pos,ns,2.420452874,-0.000061,0.000119805,-0.509492935,0.610769239,neg,ns,0.132085899,Uncx,Uncx_Intergenic_downstream,5,139551913,139551962,139551913,139551914,50,-,CGGAGGTGTCGGATCGATTCAGGATCAGGGTGTAAATTATATACAACTAA,Distal Intergenic,5,139543898,139545268,1371,1,Uncx-202,8064,Uncx-201,Uncx,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,59,88,22255,ENSMUSG00000029546,conserved gene and region,5,139551796,139551928,133,*,133,9,0.518796993,1.023076923,0.067669173,0.00000959,CpGisland,TRUE,U13,Hc-P
27261,cg19680012,-0.0000398,0.0000145,-2.741433385,0.006472333,loss,ns,-0.000012,0.0000246,-0.486938086,0.626646318,neg,ns,-0.012954891,0.007217684,-1.794881827,0.073646587,neg,ns,1.132847377,0.000038,0.000248216,0.153175991,0.878359148,pos,ns,0.636452916,Ptprt,Ptprt_Intron,2,162458446,162458495,162458494,162458495,50,-,AGAGCAATTATAAATGGTAACATCATTATTCAAGCTTCTATTTCCAAACG,"Intron (Ptprt-203/Ptprt, intron 1 of 30)",2,161521990,162661147,1139158,2,Ptprt-203,202652,Ptprt-203;Ptprt-204;Ptprt-202;Ptprt-201,Ptprt;Ptprt;Ptprt;Ptprt,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,4,19281,ENSMUSG00000053141,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3984,cg27072750,0.0000044,0.0000051,0.862854449,0.388884531,gain,ns,0.00000422,0.00000867,0.486923992,0.626656295,pos,ns,-0.0000554,0.002540143,-0.021817279,0.982607747,neg,ns,0.007619816,-0.0000367,0.0000874,-0.419718618,0.674981751,neg,ns,0.032999602,Nlgn1,Nlgn1_Intron,3,26153673,26153722,26153721,26153722,50,-,TTCTTTCGGCTGCAATCAGATAATCCTACTAATCCAATAGATTTATCTCG,"Intron (Nlgn1-205/Nlgn1, intron 2 of 7)",3,25426215,26332460,906246,2,Nlgn1-205,178738,Nlgn1-205;Nlgn1-203;Nlgn1-204,Nlgn1;Nlgn1;Nlgn1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,7,192167,ENSMUSG00000063887,conserved gene but different region,3,26153616,26153800,185,*,185,12,0.443243243,1.372912802,0.064864865,0.000000254,CpGisland,TRUE,U2,Pr-W
11688,cg22484639,0.0000174,0.00000537,3.237894077,0.00133463,gain,ns,-0.00000444,0.00000912,-0.486777577,0.626759943,neg,ns,0.0035126,0.002673222,1.313994981,0.189819393,pos,ns,0.721659421,-0.00000227,0.0000919,-0.024684499,0.980322501,neg,ns,0.074978475,Ddit4,Ddit4_Exon,10,59950914,59950963,59950914,59950915,50,-,CGCCTGGGCCAGGCTCTCCTGCAGCAGCTGCATCAGGTTGGCACACAAGT,Promoter (<=1kb),10,59949669,59951834,2166,2,Ddit4-201,871,Ddit4-201,Ddit4,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,74747,ENSMUSG00000020108,conserved gene and region,10,59950739,59950915,177,*,177,15,0.683615819,0.739966555,0.084745763,1.11E-10,CpGisland,TRUE,NA,NRS
3716,cg12271666,0.0000397,0.0000121,3.272057138,0.001188131,gain,ns,-0.00001,0.0000206,-0.486679958,0.626829051,neg,ns,0.01226916,0.006032602,2.033808924,0.042822112,pos,ns,1.368331921,-0.000184812,0.000207461,-0.890831236,0.373710573,neg,ns,0.596414415,Pou2f2,Pou2f2_Intron,7,25134811,25134860,25134811,25134812,50,-,CGGGCCCCATTGCTCCGCTCATATTTCTCGCCGGATCGATACGTTTGACT,"Intron (Pou2f2-208/Pou2f2, intron 2 of 4)",7,25120618,25179726,59109,2,Pou2f2-208,44866,Pou2f2-203;Pou2f2-209;Pou2f2-201;Pou2f2-206;Pou2f2-204;Pou2f2-205;Pou2f2-202;Pou2f2-210;Pou2f2-208,Pou2f2;Pou2f2;Pou2f2;Pou2f2;Pou2f2;Pou2f2;Pou2f2;Pou2f2;Pou2f2,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,29,18987,ENSMUSG00000008496,mapped to different genes,7,25134752,25134975,224,*,224,23,0.629464286,1.037872683,0.102678571,4.08E-18,CpGisland,TRUE,U13,Hc-P
22,cg18160025,-0.00000488,0.00000195,-2.505994059,0.012722891,loss,ns,-0.00000161,0.00000331,-0.486477111,0.626972667,neg,ns,-0.000953076,0.000968559,-0.984013731,0.325876124,neg,ns,0.486947458,0.00000919,0.0000333,0.276040196,0.782701122,pos,ns,0.955792828,Patz1,Patz1_Exon,11,3306368,3306417,3306416,3306417,50,+,ACCCCTTGCTCTGCACTTTGCTTCTCTGCGCAGACTGTGTTGTGGGGGCG,"Exon (Gm12592-201/Gm12592-201, exon 2 of 2)",11,3289167,3309083,19917,1,Patz1-204,17201,Patz1-204;Patz1-207;Patz1-205;Patz1-201;Patz1-202;Patz1-206;Patz1-212,Patz1;Patz1;Patz1;Patz1;Patz1;Patz1;Patz1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,9,56218,ENSMUSG00000020453,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8161,cg10143938,0.000000964,0.00000058,1.662512449,0.097420795,gain,ns,0.000000479,0.000000986,0.486472407,0.626975998,pos,ns,0.000524164,0.000288744,1.81532594,0.070439988,pos,ns,1.152180728,-0.000000977,0.00000993,-0.0983486,0.921719049,neg,ns,0.014701021,Pax2,Pax2_Intron,19,44808947,44808996,44808947,44808948,50,-,CGCGTTCTGAACTCAGCCCAGCCGATAGAAGGTAATTAATGACTCCATTT,"Intron (Pax2-203/Pax2, intron 5 of 9)",19,44756045,44837851,81807,1,Pax2-203,52902,Pax2-203;Pax2-201;Pax2-202,Pax2;Pax2;Pax2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,35,166,18504,ENSMUSG00000004231,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27952,cg12224833,0.0000248,0.00000636,3.898844704,0.000118511,gain,ns,0.00000526,0.0000108,0.486452661,0.626989979,pos,ns,0.001241321,0.003165658,0.392120963,0.695238281,pos,ns,0.157866323,-0.0000639,0.000108867,-0.58732516,0.557412872,neg,ns,0.766214787,Kcnh1,Kcnh1_Exon,1,192277069,192277118,192277069,192277070,50,+,CGCTTTTGAGAACGTGGATGAGGTTAGTGCCTTTATGGGTGATCCAGGGA,"Exon (Kcnh1-201/Kcnh1, exon 6 of 11)",1,192190774,192510159,319386,1,Kcnh1-201,86295,Kcnh1-201;Kcnh1-202,Kcnh1;Kcnh1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,16510,ENSMUSG00000058248,conserved gene and region,1,192276961,192277082,122,*,122,9,0.516393443,1.106854839,0.073770492,0.0000048,CpGisland,TRUE,NA,NRS
25759,cg08008930,0.0000627,0.000013,4.81949263,0.00000226,gain,ns,-0.0000108,0.0000221,-0.486344242,0.627066746,neg,ns,0.028726218,0.00647732,4.434892575,0.0000128,pos,ns,4.892529319,-0.000797154,0.000222754,-3.578619647,0.000400705,neg,ns,0.518650095,Inpp5a,Inpp5a_Intron,7,139489249,139489298,139489249,139489250,50,-,CGCTGCTGTGATGTGAAAAATAATAACTCGGATCCAAATTAAAAATATTG,"Intron (Inpp5a-203/Inpp5a, intron 4 of 15)",7,139389109,139579652,190544,1,Inpp5a-203,100140,Inpp5a-203;Inpp5a-201;Inpp5a-202;Inpp5a-205;Inpp5a-204,Inpp5a;Inpp5a;Inpp5a;Inpp5a;Inpp5a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,212111,ENSMUSG00000025477,conserved gene and region,7,139489145,139489278,134,*,134,10,0.507462687,1.168265039,0.074626866,0.00000101,CpGisland,TRUE,U11,Tr-P
21425,cg16438685,0.00000204,0.00000319,0.641044387,0.521967465,gain,ns,0.00000263,0.00000541,0.486285844,0.627108097,pos,ns,-0.000528854,0.001585787,-0.333496085,0.738985302,neg,ns,0.131364199,0.000000891,0.0000545,0.016345876,0.986968974,pos,ns,0.94987689,Cacng4,Cacng4_Exon,11,107735118,107735167,107735166,107735167,50,-,TAAACCTCAACTCTTTATTTTTCTCAATGTAAATGTTTACAGCCAGGACG,"Exon (Cacng4-201/Cacng4, exon 4 of 4)",11,107732357,107794557,62201,2,Cacng4-201,59390,Cacng4-201;Cacng4-202,Cacng4;Cacng4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,8,54377,ENSMUSG00000020723,conserved gene and region,11,107735166,107735331,166,*,166,12,0.493975904,1.18783542,0.072289157,7.76E-08,CpGisland,TRUE,U15,NS
25697,cg23032385,0.0000277,0.0000141,1.962880296,0.05055402,gain,ns,0.0000116,0.0000239,0.486262281,0.627124782,pos,ns,0.010514001,0.007015539,1.498673322,0.134976005,pos,ns,0.869743431,-0.000362056,0.000241264,-1.500665189,0.134459972,neg,ns,0.78216123,Lmo3,Lmo3_Intron,6,138426868,138426917,138426916,138426917,50,-,ACCTCATTAAGTTCTACTTACAGATGTTCTCTTAACATAATTGATCTGCG,"Intron (A830011K09Rik-201/A830011K09Rik-201, intron 2 of 3)",6,138362918,138581968,219051,2,Lmo3-204,155051,Lmo3-204;Lmo3-201;Lmo3-206;Lmo3-202;Lmo3-208;Lmo3-203;Lmo3-205,Lmo3;Lmo3;Lmo3;Lmo3;Lmo3;Lmo3;Lmo3,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,38,109593,ENSMUSG00000030226,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5200,cg16842874,-0.0000151,0.00000346,-4.371547813,0.0000169,loss,ns,-0.00000286,0.00000587,-0.486229767,0.627147805,neg,ns,-0.003653876,0.001720327,-2.123942942,0.034466408,neg,ns,1.462603978,0.0000986,0.0000592,1.666123843,0.096698829,pos,ns,0.879176204,Ets1,Ets1_Exon,9,32738293,32738342,32738293,32738294,50,+,CGGGACCGTGCTGACCTCAATAAGGACAAGCCTGTCATTCCTGCTGCTGC,"Exon (Ets1-207/Ets1, exon 8 of 10)",9,32636248,32754994,118747,1,Ets1-207,102045,Ets1-207;Ets1-201;Ets1-202;Ets1-206;Ets1-205,Ets1;Ets1;Ets1;Ets1;Ets1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,8,23871,ENSMUSG00000032035,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17556,cg22842120,-0.00000168,0.00000292,-0.574437621,0.5660883,loss,ns,-0.00000241,0.00000497,-0.486113159,0.62723038,neg,ns,0.001567346,0.001455195,1.077069412,0.282286705,pos,ns,0.549309576,-0.000105156,0.00005,-2.101278751,0.036423507,neg,ns,0.933544491,Iqsec1,Iqsec1_Intron,6,90963541,90963590,90963589,90963590,50,+,CTTGCAATTAAGCAGATCTGCTTTCAAAATATGACTAATTAGAACAGTCG,"Intron (Iqsec1-210/Iqsec1, intron 1 of 15)",6,90660981,90988685,327705,2,Iqsec1-210,25095,Iqsec1-210,Iqsec1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,3,232227,ENSMUSG00000034312,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24227,cg11465724,-0.0000157,0.000014,-1.122534823,0.262503763,loss,ns,-0.0000115,0.0000237,-0.486095187,0.627243107,neg,ns,-0.016394943,0.006944474,-2.360861896,0.018851207,neg,ns,1.724660827,0.000345871,0.00023882,1.448250894,0.148557541,pos,ns,0.7200975,Gm12902,Gm12902_Intergenic_downstream,4,124035881,124035930,124035881,124035882,50,-,CGCAAAATAGCTGGAATCAAGCAGGCACCGAAGGCTATTTATATGCTAAT,Distal Intergenic,4,123926234,123926555,322,1,Gm12902-201,109696,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,34,34,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17129,cg09382517,-0.00000908,0.00000538,-1.688825214,0.092258471,loss,ns,-0.00000444,0.00000914,-0.485958806,0.627339691,neg,ns,-0.005224778,0.00267629,-1.952246483,0.051808887,neg,ns,1.285595734,-0.0000057,0.000092,-0.061887018,0.950692687,neg,ns,0.860755966,Gm19540,Gm19540_Intergenic_downstream,12,88577816,88577865,88577816,88577817,50,+,CGGGGACTCTGTTCTGCGTCTGACTCATGGTAGGCACTCAGTAAACACTG,Distal Intergenic,12,88588616,88590437,1822,2,Gm19540-201,12572,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,100503077,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23742,cg01715384,-0.0000059,0.00000741,-0.796797339,0.426178552,loss,ns,0.00000612,0.0000126,0.485912346,0.627372594,pos,ns,-0.000674068,0.00368686,-0.182829915,0.855050986,neg,ns,0.068007988,0.0000229,0.000126791,0.180721818,0.856704023,pos,ns,0.605464916,Foxo6,Foxo6_Intergenic_downstream,4,120262412,120262461,120262412,120262413,50,-,CGGGCATTCATTAGCCGTGAGAGGAACAGTGTGTGTGAAATTAGCAGTCA,Distal Intergenic,4,120267079,120287349,20271,2,Foxo6-201,24937,Foxo6-201,Foxo6,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,42,329934,ENSMUSG00000052135,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7064,cg13035951,0.00000578,0.0000013,4.428468243,0.0000132,gain,ns,0.00000108,0.00000222,0.485805483,0.62744828,pos,ns,0.000746994,0.000649442,1.150209088,0.250944275,pos,ns,0.600422708,-0.0000179,0.0000223,-0.802032947,0.423148283,neg,ns,0.024273302,Tfap2a,Tfap2a_Intron,13,40730690,40730739,40730738,40730739,50,+,GGGAAGAATGCCTGGAAATCGAGCGTGAAGCGGAGAGGCAACTCGCGCCG,"Intron (Gm26688-201/Gm26688-201, intron 1 of 2)",13,40715675,40733823,18149,2,Tfap2a-202,3084,Tfap2a-201;Tfap2a-202;Tfap2a-205;Tfap2a-203;Tfap2a-209;Tfap2a-208;Tfap2a-206;Tfap2a-204;Tfap2a-207,Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,57,21418,ENSMUSG00000021359,mapped to different genes,13,40730676,40730877,202,*,202,25,0.633663366,1.381668947,0.123762376,7.36E-22,CpGisland,TRUE,U3,Pr-B
2669,cg12757529,-0.00000284,0.00000129,-2.20169796,0.028423045,loss,ns,-0.00000107,0.00000219,-0.485779696,0.627466544,neg,ns,0.000910316,0.000642722,1.416345691,0.157678346,pos,ns,0.802227946,-0.0000329,0.0000221,-1.489465922,0.137381375,neg,ns,0.958734647,Myb,Myb_Exon,10,21150496,21150545,21150496,21150497,50,+,CGACGCATTGTAGAATTCCAGTGGTTCTTGATAGCATTATCAGTTCTGCA,"Exon (Myb-203/Myb, exon 6 of 16)",10,21124935,21160905,35971,2,Myb-203,10360,Myb-203;Myb-201;Myb-202;Myb-206;Myb-205,Myb;Myb;Myb;Myb;Myb,0;0;0;0;-1349,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,17863,ENSMUSG00000019982,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13890,cg02558751,-0.0000256,0.0000143,-1.788046358,0.074745102,loss,ns,-0.0000118,0.0000243,-0.485777247,0.627468278,neg,ns,-0.019709738,0.007114237,-2.770464108,0.005935449,neg,ns,2.22654641,0.000431966,0.000244658,1.765589896,0.078449059,pos,ns,0.784553079,Gm29184,Gm29184_Intron,1,73270900,73270949,73270948,73270949,50,+,ACCACAAAAGCTTATATTTCCTGCTACTAAATACACAGCCCCTGCTGACG,"Intron (Gm29185-201/Gm29185-201, intron 2 of 2)",1,73311717,73312050,334,2,Gm29184-201,41101,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6526,cg26293454,-0.00000239,0.00000214,-1.116699189,0.264987739,loss,ns,-0.00000176,0.00000363,-0.485750601,0.627487151,neg,ns,-0.002439342,0.001063658,-2.293351852,0.022496745,neg,ns,1.647880324,0.0000767,0.0000366,2.097479603,0.036760715,pos,ns,0.937316119,Strbp,Strbp_Exon,2,37625187,37625236,37625235,37625236,50,+,GTATTCCAGATGCCAAACACTCCATTACTCGTCTCAAGGCCTCCCCAGCG,"Exon (Strbp-207/Strbp, exon 7 of 19)",2,37483228,37647219,163992,2,Strbp-207,21983,Strbp-207;Strbp-201;Strbp-202,Strbp;Strbp;Strbp,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,7,20744,ENSMUSG00000026915,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1816,cg00471897,-0.0000201,0.00000422,-4.751955553,0.00000309,loss,ns,0.00000348,0.00000718,0.485516847,0.627652725,pos,ns,-0.006790536,0.002102169,-3.230251434,0.001369618,neg,ns,2.863400517,0.000237157,0.0000723,3.28047238,0.001154411,pos,ns,0.959460602,Foxp2,Foxp2_threeUTR,6,15405562,15405611,15405610,15405611,50,-,TCTAAAGAACGCGAACGTCTTCAAGCAATGATGACCCACTTGCACATGCG,3' UTR,6,14901349,15441977,540629,1,Foxp2-207,504213,Foxp2-207;Foxp2-213;Foxp2-205;Foxp2-204;Foxp2-201;Foxp2-209;Foxp2-202;Foxp2-206,Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,10,65,114142,ENSMUSG00000029563,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14627,cg00675053,-0.00000538,0.0000024,-2.240892664,0.02574082,loss,ns,-0.00000198,0.00000408,-0.485462901,0.627690939,neg,ns,-0.000459567,0.001195221,-0.38450396,0.700868594,neg,ns,0.1543634,-0.0000042,0.0000411,-0.102162974,0.918693367,neg,ns,0.943445316,Max,Max_Exon,12,76940035,76940084,76940083,76940084,50,+,CTTCGCATATACTGGATATATTCTGTGGCTTTGTCTAGGATTTGGGCCCG,"Exon (Max-202/Max, exon 4 of 5)",12,76937269,76962185,24917,2,Max-202,22101,Max-202;Max-201;Max-205;Max-206;Max-204,Max;Max;Max;Max;Max,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,5,17187,ENSMUSG00000059436,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9252,cg01074811,0.00000113,0.00000247,0.459045263,0.646523363,gain,ns,-0.00000203,0.00000419,-0.485372212,0.627755183,neg,ns,-0.001627201,0.001227413,-1.325715788,0.185909932,neg,ns,0.730697407,0.0000117,0.0000422,0.276683657,0.782207408,pos,ns,0.927970664,Cadm1,Cadm1_Exon,9,47850255,47850304,47850303,47850304,50,-,ACCCCTTCATCTTTCAGGTACATACTTCACTCATGAAGCCAAAGGAGCCG,"Exon (Cadm1-204/Cadm1, exon 10 of 10)",9,47530173,47853385,323213,1,Cadm1-204,320082,Cadm1-204;Cadm1-209;Cadm1-206;Cadm1-202;Cadm1-203;Cadm1-201,Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,13,77,54725,ENSMUSG00000032076,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17421,cg17365273,0.00000122,0.00000538,0.226478099,0.820978853,gain,ns,-0.00000444,0.00000914,-0.48528491,0.62781703,neg,ns,-0.00000533,0.002677433,-0.001990729,0.99841291,neg,ns,0.000689812,-0.0000171,0.0000921,-0.185652069,0.852839032,neg,ns,0.914564805,Picalm,Picalm_Exon,7,90206164,90206213,90206164,90206165,50,-,CGGCAGCATCCAGCCCCTCCAGTCACAGTCCTCACAGAGCTTCAGGAAAG,"Exon (Picalm-209/Picalm, exon 13 of 14)",7,90130213,90208932,78720,1,Picalm-205,75951,Picalm-205;Picalm-206;Picalm-215;Picalm-212;Picalm-213;Picalm-201;Picalm-202;Picalm-209,Picalm;Picalm;Picalm;Picalm;Picalm;Picalm;Picalm;Picalm,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,4,233489,ENSMUSG00000039361,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22978,cg24296627,-0.00000268,0.00000214,-1.252619459,0.211288334,loss,ns,-0.00000177,0.00000364,-0.485278601,0.6278215,neg,ns,-0.00244965,0.001065834,-2.298340607,0.022207689,neg,ns,1.653496627,0.0000833,0.0000367,2.272877935,0.023717722,pos,ns,0.948209846,Ube2o,Ube2o_Exon,11,116545098,116545147,116545146,116545147,50,+,CAGGCAATCTTGGCTGGCTCTACCTTGGCTGGGAAGACATACAGACAGCG,"Exon (Ube2o-201/Ube2o, exon 8 of 18)",11,116537740,116581447,43708,2,Ube2o-201,36300,Ube2o-202;Ube2o-201;Ube2o-203,Ube2o;Ube2o;Ube2o,-1081;0;3694,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,217342,ENSMUSG00000020802,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7013,cg09632700,-0.00000754,0.000003,-2.513417865,0.012463572,loss,ns,-0.00000247,0.0000051,-0.48523307,0.627853756,neg,ns,-0.003918729,0.001492988,-2.624756559,0.009100748,neg,ns,2.040922907,0.000119607,0.0000513,2.329538237,0.020472609,pos,ns,0.925421155,Gm12136,Gm12136_Intergenic_downstream,11,40563008,40563057,40563056,40563057,50,-,GAGCAATTACCCATCTCTTGACTGAAGCACAGGGCAATTACAAGCTACCG,Distal Intergenic,11,40569317,40570525,1209,2,Gm12136-201,7517,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,382508,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13306,cg01772217,0.0000191,0.00000401,4.769735028,0.00000284,gain,ns,-0.0000033,0.00000681,-0.485190116,0.627884188,neg,ns,-0.006928384,0.001994065,-3.474501913,0.000584719,neg,ns,3.233053083,0.000198656,0.0000686,2.896887961,0.004037071,pos,ns,0.088159828,Egr3,Egr3_Promoter,14,70076769,70076818,70076817,70076818,50,-,TTCCTGCTTTCTAATGTTCCATTGTGAGGAGCTTCCATTGTGACGTCGCG,Promoter (<=1kb),14,70077203,70079955,2753,1,Egr3-201,-434,Egr3-201;Egr3-204;Egr3-203;Egr3-202,Egr3;Egr3;Egr3;Egr3,0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,10,19,13655,ENSMUSG00000033730,conserved gene and region,14,70076812,70076877,66,*,66,7,0.621212121,1.105263158,0.106060606,0.00000889,CpGisland,TRUE,U3,Pr-B
10537,cg26957053,0.000100414,0.0000105,9.58369997,3.19E-19,gain,yes,-0.00000864,0.0000178,-0.485174453,0.627895285,neg,ns,0.008692447,0.005214804,1.66687882,0.096548444,pos,ns,1.01525472,-0.000103829,0.000179337,-0.578958694,0.563037471,neg,ns,0.087599953,Npas3,Npas3_Exon,12,54068282,54068331,54068282,54068283,50,+,CGACAATGACAGCAGCATCTGGAACTACCCGCCCAACCGGGAGATCTCCA,"Exon (Npas3-204/Npas3, exon 11 of 11)",12,53248157,54069532,821376,1,Npas3-204,820125,Npas3-204;Npas3-201;Npas3-203,Npas3;Npas3;Npas3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,13,103,27386,ENSMUSG00000021010,conserved gene and region,12,54067705,54068595,891,*,891,91,0.67003367,0.912765957,0.102132436,6.18E-70,CpGisland,TRUE,U3,Pr-B
3796,cg04870368,-0.00000252,0.00000704,-0.357473404,0.720980679,loss,ns,0.0000058,0.000012,0.485069654,0.627969535,pos,ns,-0.005072989,0.003503975,-1.447780932,0.148688888,neg,ns,0.827721487,-0.0000715,0.000120501,-0.593342717,0.553384462,neg,ns,0.829557517,5730522E02Rik,5730522E02Rik_Intergenic_downstream,11,25470134,25470183,25470134,25470135,50,+,CGAGATGGATTCGGGGCTTTATTGAAAGATCATACAGGATGACTGCAAAA,Distal Intergenic,11,25602816,25620098,17283,2,5730522E02Rik-205,149915,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,21,90,70626,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10864,cg23016257,0.00000399,0.00000383,1.042228718,0.298117756,gain,ns,0.00000316,0.00000651,0.485055843,0.62797932,pos,ns,-0.00240732,0.001907245,-1.262197861,0.207826348,neg,ns,0.682299394,0.0000672,0.0000656,1.024051279,0.306609491,pos,ns,0.834734276,Neurod6,Neurod6_Exon,6,55678702,55678751,55678702,55678703,50,-,CGTAAGGGAAGTGGCTGTCGGTGGGCAACCTGAACATGGCACCCTGCCCA,"Exon (Neurod6-201/Neurod6, exon 2 of 2)",6,55677822,55681263,3442,2,Neurod6-201,2512,Neurod6-201,Neurod6,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,16,11922,ENSMUSG00000037984,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6511,cg23043022,0.0000756,0.0000111,6.818775384,4.81E-11,gain,yes,0.00000913,0.0000188,0.485016685,0.628007065,pos,ns,0.016376902,0.005515012,2.969513412,0.003215545,pos,ns,2.492745471,-0.000283144,0.000189661,-1.492896489,0.136481309,neg,ns,0.487715277,Zfp536,Zfp536_Exon,7,37568243,37568292,37568291,37568292,50,+,CCAAATCAGCAGGCATTTTCTGCTTGGAGCCATCTGCTCCCACTAACACG,Promoter (<=1kb),7,37318024,37568390,250367,2,Zfp536-211,98,Zfp536-211;Zfp536-202;Zfp536-201;Zfp536-203;Zfp536-206;Zfp536-209;Zfp536-208,Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,13,112,243937,ENSMUSG00000043456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
303,cg11703808,-0.00000474,0.00000345,-1.372602214,0.170868249,loss,ns,0.00000284,0.00000586,0.485009442,0.628012197,pos,ns,-0.002560114,0.001717759,-1.490379789,0.137141159,neg,ns,0.862832185,0.0000777,0.0000591,1.315956807,0.189160821,pos,ns,0.853260332,Ewsr1,Ewsr1_Exon,11,5079470,5079519,5079518,5079519,50,+,TACTCAAAAACTTACCACCAGGCTTATTGAAGCCACCTCGCTCTCCAGCG,"Exon (Ewsr1-203/Ewsr1, exon 9 of 17)",11,5069689,5099266,29578,2,Ewsr1-203,19747,Ewsr1-203;Ewsr1-202;Ewsr1-205;Ewsr1-209;Ewsr1-212;Ewsr1-208;Ewsr1-211;Ewsr1-204;Ewsr1-210,Ewsr1;Ewsr1;Ewsr1;Ewsr1;Ewsr1;Ewsr1;Ewsr1;Ewsr1;Ewsr1,0;0;0;0;-949;0;0;0;6517,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,8,14030,ENSMUSG00000009079,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17468,cg04837039,0.0000957,0.0000114,8.411180507,1.51E-15,gain,yes,0.00000937,0.0000193,0.484825337,0.628142649,pos,ns,0.01809934,0.005663493,3.195790852,0.00153819,pos,ns,2.812989952,-0.000386495,0.000194767,-1.984396415,0.048093121,neg,ns,0.205544956,Sytl2,Sytl2_Exon,7,90395221,90395270,90395269,90395270,50,+,AGAAGAGCCCGAGCTCTTTAACCAATCTTAGCAGCTCCTCTGGCATGACG,"Exon (Sytl2-203/Sytl2, exon 11 of 18)",7,90348699,90410439,61741,1,Sytl2-202,46522,Sytl2-202;Sytl2-203;Sytl2-205;Sytl2-206;Sytl2-207;Sytl2-220;Sytl2-201;Sytl2-218;Sytl2-216;Sytl2-215;Sytl2-219;Sytl2-214;Sytl2-204,Sytl2;Sytl2;Sytl2;Sytl2;Sytl2;Sytl2;Sytl2;Sytl2;Sytl2;Sytl2;Sytl2;Sytl2;Sytl2,0;0;0;0;0;0;0;0;0;0;0;0;-2948,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,83671,ENSMUSG00000030616,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26017,cg25033393,0.0000332,0.00000415,7.988813859,2.70E-14,gain,yes,0.00000342,0.00000705,0.484728114,0.628211543,pos,ns,0.004955111,0.002065606,2.398865523,0.017036385,pos,ns,1.768622559,-0.000013,0.000071,-0.182977017,0.854935662,neg,ns,0.064408739,Gm2574,Gm2574_Intergenic_downstream,3,143101177,143101226,143101225,143101226,50,-,ATTTTTAGCAACATCTTTTATTATCTTCATTATTCATTTACAGGGGACCG,Distal Intergenic,3,142962611,142963612,1002,1,Gm2574-201,138615,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,19,100040053,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
8433,cg05801832,0.00000866,0.00000139,6.237691293,1.45E-09,gain,yes,-0.00000114,0.00000236,-0.484651154,0.62826608,neg,ns,0.000980377,0.0006913,1.418163278,0.157147552,pos,ns,0.803692379,0.0000181,0.0000238,0.761212923,0.447108557,pos,ns,0.037169513,Zeb2,Zeb2_fiveUTR,2,45113188,45113237,45113188,45113189,50,-,CGTGATCGCCAAGTTTCTCTCTGGGAAAGGATCTGGGATAGATTATACCT,Promoter (<=1kb),2,45104038,45113216,9179,2,Zeb2-205,0,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219;Zeb2-211;Zeb2-210;Zeb2-205;Zeb2-223;Zeb2-217;Zeb2-225;Zeb2-204;Zeb2-206;Zeb2-230,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;-3112;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,15,158,24136,ENSMUSG00000026872,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
9146,cg21836049,-0.00000849,0.00000473,-1.795364176,0.073569573,loss,ns,-0.00000389,0.00000803,-0.484632956,0.628278977,neg,ns,-0.002780775,0.002353457,-1.181570261,0.23828188,neg,ns,0.622908982,-0.0000279,0.0000809,-0.344726916,0.730533436,neg,ns,0.922836415,Gm13469,Gm13469_Intergenic_upstream,2,47133990,47134039,47134038,47134039,50,-,CCTAATGCTGAAATTACAGTTTTTACATTGTAAATTTTTCCTGCTATGCG,Distal Intergenic,2,46406220,46406569,350,2,Gm13469-201,-727470,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,20,27,383690,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9353,cg17045742,0.0000177,0.00000507,3.498601334,0.000536174,gain,ns,0.00000417,0.00000861,0.484500764,0.62837266,pos,ns,0.008053083,0.002522198,3.192883159,0.001553259,pos,ns,2.808756221,-0.000271963,0.0000867,-3.135452546,0.001880329,neg,ns,0.092697132,Gm8588,Gm8588_Intergenic_downstream,13,48324488,48324537,48324536,48324537,50,-,CTCTTTATTCCTCTGACATTTCCACTCTTGAAAAGATGACCCAGTTCCCG,Distal Intergenic,13,48312670,48314251,1582,1,Gm8588-201,11867,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,3,667351,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2580,cg03197661,0.0000338,0.00000487,6.943421535,2.25E-11,gain,yes,-0.00000401,0.00000828,-0.484346766,0.628481805,neg,ns,0.001835975,0.002425022,0.757096372,0.449567173,pos,ns,0.347205409,-0.0000707,0.0000834,-0.847829132,0.397187257,neg,ns,0.81743659,Rbm10,Rbm10_Exon,X,20641143,20641192,20641191,20641192,50,-,TGACTAACCCACTGCGTCTGTATCTGAATGCTGTCTCCAGGTCAGAGCCG,"Exon (Rbm10-205/Rbm10, exon 6 of 24)",20,20617503,20650888,33386,1,Rbm10-205,23640,Rbm10-205;Rbm10-204;Rbm10-203;Rbm10-206;Rbm10-201;Rbm10-202;Rbm10-207,Rbm10;Rbm10;Rbm10;Rbm10;Rbm10;Rbm10;Rbm10,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,14,236732,ENSMUSG00000031060,conserved gene and region,X,20641104,20641268,165,*,165,11,0.56969697,0.821638751,0.066666667,0.000000724,CpGisland,TRUE,U10,Tr-S
2594,cg10325336,-0.0000182,0.0000256,-0.71132433,0.477418168,loss,ns,-0.0000211,0.0000435,-0.484325196,0.628497093,neg,ns,0.008590238,0.012750312,0.673727667,0.500986484,pos,ns,0.300173991,-0.000644389,0.000438482,-1.4695896,0.142687054,neg,ns,0.09264016,Sec24c,Sec24c_fiveUTR,14,20674338,20674387,20674386,20674387,50,+,GCCTGGGAGCCTTGACGTTAGGAACGAAGTCTAACCTGGATCTGGAGCCG,Promoter (<=1kb),14,20674339,20676228,1890,1,Sec24c-211,0,Sec24c-201;Sec24c-203;Sec24c-205;Sec24c-211;Sec24c-204;Sec24c-202;Sec24c-210;Sec24c-212;Sec24c-207,Sec24c;Sec24c;Sec24c;Sec24c;Sec24c;Sec24c;Sec24c;Sec24c;Sec24c,0;0;0;0;0;0;0;-19;-42,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,3,218811,ENSMUSG00000039367,conserved gene and region,14,20674178,20674414,237,*,237,22,0.641350211,0.910424306,0.092827004,2.41E-16,CpGisland,TRUE,U1,Pr-A
8362,cg00693817,-0.0000401,0.00000692,-5.793299142,0.000000017,loss,yes,-0.00000569,0.0000118,-0.484316402,0.628503326,neg,ns,-0.005632612,0.003443551,-1.635698433,0.102917597,neg,ns,0.987510362,0.00000745,0.000118423,0.062926646,0.94986547,pos,ns,0.861840928,Zeb2,Zeb2_Intron,2,45047832,45047881,45047832,45047833,50,+,CGCTTTTGATTCGTTCTGTTCCAATAACCTGAGAAAAGTTTATGGACATG,"Intron (Zeb2-212/Zeb2, intron 3 of 10)",2,44983632,45117395,133764,2,Zeb2-212,69514,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-218;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14517,cg07121317,-0.0000163,0.0000103,-1.58993516,0.112868692,loss,ns,-0.00000845,0.0000174,-0.484276053,0.628531925,neg,ns,-0.006227169,0.005109563,-1.218728161,0.223873999,neg,ns,0.649996344,-0.0000636,0.000175717,-0.36181682,0.71773542,neg,ns,0.61569772,Ptprd,Ptprd_Intron,4,76138625,76138674,76138625,76138626,50,-,CGAGAAGAAGGAGGCTAGGGCTGGGGAGAAGAATTAAATTAGATTTACAG,"Intron (Ptprd-206/Ptprd, intron 6 of 35)",4,75941238,76449980,508743,2,Ptprd-206,311306,Ptprd-206;Ptprd-204;Ptprd-213;Ptprd-220;Ptprd-203;Ptprd-217;Ptprd-218;Ptprd-219;Ptprd-201;Ptprd-221;Ptprd-205;Ptprd-202,Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd,0;0;0;0;0;0;0;0;0;-4482;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,32,19266,ENSMUSG00000028399,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14436,cg06777598,-0.0000046,0.00000195,-2.362034136,0.018792784,loss,ns,-0.0000016,0.00000331,-0.484093263,0.628661491,neg,ns,0.00050892,0.00096912,0.52513625,0.599863846,pos,ns,0.221947312,-0.000094,0.0000333,-2.820077298,0.005110523,neg,ns,0.044005608,Ctif,Ctif_Exon,18,75610734,75610783,75610782,75610783,50,+,GAAGTCCAGCTTTTCCGGCTGCAGGTCCCAGGTGGCACCACTAGAGGGCG,"Exon (Ctif-201/Ctif, exon 5 of 12)",18,75431224,75697554,266331,2,Ctif-201,86771,Ctif-201,Ctif,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,4,269037,ENSMUSG00000052928,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3676,cg10341417,-0.00000706,0.0000109,-0.649613774,0.516422777,loss,ns,-0.00000894,0.0000185,-0.484089526,0.62866414,neg,ns,-0.007216715,0.005408614,-1.334300302,0.183084751,neg,ns,0.737347827,-0.000105766,0.000186002,-0.568626464,0.570021353,neg,ns,0.665720407,Gm12067,Gm12067_Intergenic_upstream,11,24980239,24980288,24980287,24980288,50,+,TTAATGGTGTTTTCTGGCTCCAAATCACAGCTTGTGGTGCTCTGCAGGCG,Distal Intergenic,11,24552438,24553962,1525,2,Gm12067-201,-426277,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,26,58,100417843,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4204,cg16451152,-0.0000127,0.00000673,-1.88670907,0.060133816,loss,ns,0.00000554,0.0000114,0.48408558,0.628666936,pos,ns,0.003212836,0.003351476,0.958633134,0.33849064,pos,ns,0.470453336,-0.00024922,0.000115257,-2.162297791,0.031359868,neg,ns,0.909089785,Gm7729,Gm7729_Intergenic_upstream,18,27497778,27497827,27497778,27497779,50,+,CGTGCAATTGCATTATAAGGGTCTATAAGCCCAATTTGCTTCACATTCTT,Distal Intergenic,18,27598644,27599756,1113,1,Gm7729-201,-100817,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,22,665646,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22677,cg19246949,0.00000577,0.00000203,2.84530889,0.004732246,gain,ns,0.00000167,0.00000345,0.483871146,0.628818948,pos,ns,0.000859789,0.001010046,0.851237463,0.395294512,pos,ns,0.403079215,-0.0000302,0.0000347,-0.868240732,0.385934204,neg,ns,0.947214772,BC052040,BC052040_Exon,2,115669611,115669660,115669611,115669612,50,+,CGGGACCCTTCTCAGATTCCAGATGGAGTTCTAGCAAATCAGGTCTATCA,"Exon (BC052040-203/BC052040, exon 6 of 11)",2,115581716,115778768,197053,1,BC052040-203,87895,BC052040-203;BC052040-201,BC052040;BC052040,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,49,399568,ENSMUSG00000040282,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26710,cg17657184,-0.0000108,0.00000806,-1.340444996,0.181082237,loss,ns,-0.00000663,0.0000137,-0.483797962,0.628870831,neg,ns,-0.009481705,0.004012431,-2.363082182,0.018740684,neg,ns,1.727214551,0.000186273,0.000137987,1.349929049,0.178023589,pos,ns,0.670879916,Phf8,Phf8_Exon,X,151598588,151598637,151598636,151598637,50,-,TGCTCAAGGCCAGCAGGCAGGTGGGGGGACCTGACTATGCTGCCCTCACG,"Exon (Phf8-203/Phf8, exon 16 of 19)",20,151520672,151625833,105162,1,Phf8-203,77916,Phf8-203;Phf8-211;Phf8-206;Phf8-202;Phf8-201,Phf8;Phf8;Phf8;Phf8;Phf8,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,320595,ENSMUSG00000041229,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23059,cg22358400,0.00000359,0.00000368,0.974701844,0.330468138,gain,ns,-0.00000303,0.00000625,-0.483743627,0.628909353,neg,ns,-0.001499116,0.001832355,-0.818135982,0.413907955,neg,ns,0.383096227,0.0000737,0.000063,1.169231356,0.243208681,pos,ns,0.928391446,Taok3,Taok3_fiveUTR,5,117241150,117241199,117241150,117241151,50,-,CGGCCTACCCAGTCAGTTCAGAGCCAGGCCCTCCACTACCGGAACAGAGA,5' UTR,5,117120129,117275217,155089,1,Taok3-203,121021,Taok3-203;Taok3-210;Taok3-201;Taok3-205;Taok3-208;Taok3-202,Taok3;Taok3;Taok3;Taok3;Taok3;Taok3,0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,11,20,330177,ENSMUSG00000061288,conserved gene and region,5,117241107,117241224,118,*,118,13,0.661016949,1.011206328,0.110169492,8.62E-11,CpGisland,TRUE,U10,Tr-S
16960,cg09309565,0.00000529,0.0000125,0.422673625,0.672826431,gain,ns,-0.0000103,0.0000213,-0.483650189,0.628975599,neg,ns,0.008824312,0.006228771,1.416701942,0.157574202,pos,ns,0.802514885,-0.000311505,0.000214207,-1.45422692,0.146895099,neg,ns,0.125263746,Rnf43,Rnf43_Intron,11,87689521,87689570,87689569,87689570,50,-,TTGGAAGGACTCCAGCCAGGCATGGAAGGGCTCTTTGATAATATCTGACG,"Intron (Rnf43-206/Rnf43, intron 1 of 5)",11,87662722,87729934,67213,1,Rnf43-206,26799,Rnf43-206;Rnf43-204;Rnf43-209;Rnf43-202;Rnf43-203,Rnf43;Rnf43;Rnf43;Rnf43;Rnf43,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,207742,ENSMUSG00000034177,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6302,cg22721472,0.00000194,0.00000217,0.897193821,0.370311733,gain,ns,0.00000178,0.00000368,0.483582127,0.629023857,pos,ns,0.002417698,0.001078663,2.241383601,0.025708669,pos,ns,1.589920407,-0.0000198,0.0000371,-0.533608633,0.59399472,neg,ns,0.945442895,Tshz3,Tshz3_threeUTR,7,36773441,36773490,36773441,36773442,50,+,CGGCAGCATTAAAATTGTCTTTTTGCTATAATTTTGTGTTGCGTTCACAA,3' UTR,7,36698118,36773553,75436,1,Tshz3-201,75323,Tshz3-201,Tshz3,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,58,243931,ENSMUSG00000021217,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25744,cg08459815,-0.00000528,0.00000705,-0.749433569,0.454164246,loss,ns,-0.00000579,0.000012,-0.483576949,0.629027528,neg,ns,-0.003776054,0.003509702,-1.075890127,0.282813007,neg,ns,0.548500621,-0.000120386,0.000120698,-0.997415913,0.319340574,neg,ns,0.774674208,Gm9038,Gm9038_Intergenic_upstream,6,139143713,139143762,139143713,139143714,50,-,CGAACATGGGGCTGCATAATTATGGTGATGTACGAGAATAGTTGGTTTGT,Distal Intergenic,6,138859521,138860124,604,2,Gm9038-201,-283638,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,5,668196,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19467,cg12392571,-0.00000788,0.00000509,-1.546922485,0.122902171,loss,ns,-0.00000418,0.00000865,-0.48353522,0.629057116,neg,ns,0.002234904,0.002533928,0.881992063,0.378464464,pos,ns,0.421974892,-0.00017452,0.0000871,-2.002718298,0.04607803,neg,ns,0.959411737,Gm12685,Gm12685_Intergenic_downstream,4,99375098,99375147,99375098,99375099,50,-,CGAGATTCAATTCTCTCAGATAATAGGTAAATAATAGTTAAGGATCAGGC,Distal Intergenic,4,99418498,99418711,214,2,Gm12685-201,43613,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,13,13,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25222,cg04649033,-0.0000127,0.00000777,-1.628336677,0.104469334,loss,ns,0.00000638,0.0000132,0.483458969,0.629111182,pos,ns,-0.006565125,0.003868977,-1.696863425,0.090726226,neg,ns,1.042267154,0.0000311,0.000133054,0.233923785,0.815198554,pos,ns,0.789728441,Gm7902,Gm7902_Intergenic_downstream,5,133823772,133823821,133823820,133823821,50,-,ATTCATGAGTGTATATTGATTTAGGCAGCCTTCCCAGGACCCTGGTACCG,Distal Intergenic,5,133841573,133842519,947,2,Gm7902-201,18747,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,666038,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2170,cg21430924,7.89E-08,0.00000384,0.020542544,0.98362379,gain,ns,0.00000315,0.00000652,0.483407479,0.629147693,pos,ns,0.002588327,0.001910619,1.354705957,0.176497725,pos,ns,0.753260889,-0.000100083,0.0000657,-1.523192789,0.128729912,neg,ns,0.944952972,Cyp7b1,Cyp7b1_Intron,3,18190066,18190115,18190066,18190067,50,+,CGGAAGCAACAGATGAACAAAGCCCACATTCAAATCTGTAGCTCATTAAA,"Intron (Cyp7b1-201/Cyp7b1, intron 1 of 5)",3,18071950,18243338,171389,2,Cyp7b1-201,53223,Cyp7b1-201,Cyp7b1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,17,13123,ENSMUSG00000039519,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20390,cg26472714,0.000143621,0.0000137,10.44955004,4.28E-22,gain,yes,-0.0000113,0.0000233,-0.483403532,0.629150492,neg,ns,0.018220392,0.006840636,2.663552122,0.008136125,pos,ns,2.089582364,-0.000429801,0.000235249,-1.82700622,0.068660222,neg,ns,0.272561779,Hoxc4,Hoxc4_Promoter,15,103018832,103018881,103018832,103018833,50,-,CGTGATATCATTAAACCAAGTTTTATGGTGTAGGGAGAGCTGACAAACCC,Promoter (<=1kb),15,103018934,103036405,17472,1,Hoxc4-202,-102,Hoxc4-202;Hoxc5-202;Hoxc5-201,Hoxc4;Hoxc5;Hoxc5,0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,91,15423,ENSMUSG00000075394,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
25365,cg07865615,0.000047,0.0000127,3.70899516,0.000246508,gain,ns,0.0000104,0.0000215,0.483332486,0.629200871,pos,ns,0.007171618,0.006307786,1.13694696,0.256438525,pos,ns,0.59101673,-0.000126654,0.000216924,-0.583862343,0.559737514,neg,ns,0.665257174,Gm9341,Gm9341_Intergenic_downstream,7,136035947,136035996,136035947,136035948,50,-,CGGTACCCCCCGTGCAGGTGACAGTCTGTCACATTGAAGGCAGATTAGCA,Distal Intergenic,7,135952798,135953783,986,1,Gm9341-201,83198,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,27,28,668764,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2680,cg09289224,0.000032,0.00000534,5.989551794,5.83E-09,gain,yes,-0.00000439,0.00000908,-0.483300591,0.629223488,neg,ns,0.002686797,0.002659522,1.01025573,0.313160659,pos,ns,0.504232802,0.000128077,0.0000915,1.400352937,0.162407729,pos,ns,0.658822716,Slc44a2,Slc44a2_Exon,9,21353004,21353053,21353052,21353053,50,-,AGGACCTGGAAAGGAATGACGGCTCTCAGGAGCGACCCTACTTCATGTCG,"Exon (Slc44a2-205/Slc44a2, exon 6 of 7)",9,21320698,21355028,34331,1,Slc44a2-210,32306,Slc44a2-210;Slc44a2-207;Slc44a2-201;Slc44a2-202;Slc44a2-209;Slc44a2-205;Slc44a2-203,Slc44a2;Slc44a2;Slc44a2;Slc44a2;Slc44a2;Slc44a2;Slc44a2,0;0;0;8122;6020;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,68682,ENSMUSG00000057193,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
2042,cg07405789,0.00000194,0.00000299,0.647182186,0.517992975,gain,ns,0.00000245,0.00000508,0.483223667,0.629278038,pos,ns,0.002883138,0.001488342,1.937147674,0.053635566,pos,ns,1.270547134,-0.000128542,0.0000512,-2.511371018,0.012534596,neg,ns,0.928739197,Capza2,Capza2_threeUTR,6,17665304,17665353,17665352,17665353,50,+,AGTGAGAATTATCAGACAATGTCGGACACTACTTTCAAAGCCTTACGTCG,3' UTR,6,17636983,17666972,29990,1,Capza2-201,28321,Capza2-201;Capza2-202;Capza2-206;Capza2-204,Capza2;Capza2;Capza2;Capza2,0;0;28191;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,12343,ENSMUSG00000015733,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7113,cg03342842,-0.0000137,0.0000084,-1.635773041,0.102901966,loss,ns,-0.00000689,0.0000143,-0.483220512,0.629280275,neg,ns,-0.007898334,0.004179046,-1.889985045,0.059692702,neg,ns,1.224078764,-0.0000551,0.000143717,-0.383259298,0.701790202,neg,ns,0.77461914,Zfpm2,Zfpm2_Intron,15,41054571,41054620,41054619,41054620,50,+,TGTAATGTTCTCTGAGTTAAGTTTTACCATTCATAATGAATGCAGTCTCG,"Intron (Zfpm2-201/Zfpm2, intron 5 of 7)",15,40655035,41104592,449558,1,Zfpm2-201,399536,Zfpm2-201;Zfpm2-203,Zfpm2;Zfpm2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,41,22762,ENSMUSG00000022306,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21528,cg10523056,-0.00000831,0.00000327,-2.543114742,0.01147266,loss,ns,0.00000268,0.00000555,0.483191909,0.629300559,pos,ns,0.001140157,0.001626861,0.700832602,0.483933188,pos,ns,0.315214593,-0.00000132,0.0000559,-0.023598893,0.981187738,neg,ns,0.921688281,Bsn,Bsn_Exon,9,108107995,108108044,108108043,108108044,50,-,CAGCTCCCGGAGCAGGCTGGCCTTGGTAGCAGGGACAGTGGTGGGCCCCG,"Exon (Bsn-201/Bsn, exon 6 of 12)",9,108096022,108190384,94363,2,Bsn-201,82340,Bsn-201;Bsn-202,Bsn;Bsn,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,8,12217,ENSMUSG00000032589,conserved gene and region,9,108107742,108108054,313,*,313,19,0.638977636,0.596190476,0.060702875,8.61E-11,CpGisland,TRUE,U11,Tr-P
6670,cg09148605,0.000284892,0.0000208,13.67628368,1.22E-33,gain,yes,-0.0000171,0.0000354,-0.483175881,0.629311926,neg,ns,0.066728099,0.010367845,6.436062743,4.65E-10,pos,ns,9.332253001,-0.002593183,0.000356549,-7.273000785,2.89E-12,neg,yes,0.41335403,Uri1,Uri1_Intron,7,37970938,37970987,37970986,37970987,50,-,AGACTCAGACAGCCTAATAACTCAAGGAGCTGTTTGACAGATTTCATCCG,"Intron (Uri1-201/Uri1, intron 4 of 10)",7,37959992,38019542,59551,2,Uri1-201,48555,Uri1-201;Uri1-204;Uri1-206;Uri1-207;Uri1-205,Uri1;Uri1;Uri1;Uri1;Uri1,0;-1310;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,27,19777,ENSMUSG00000030421,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17377,cg02129856,0.000100673,0.00000962,10.46678628,3.74E-22,gain,yes,0.00000789,0.0000163,0.483126732,0.629346781,pos,ns,0.019726914,0.004787146,4.120808536,0.0000485,pos,ns,4.314236475,-0.000130237,0.00016463,-0.791092808,0.429494662,neg,ns,0.167822082,Gbx2,Gbx2_Intergenic_upstream,1,89941544,89941593,89941592,89941593,50,+,GAATTTAATTGCCGAGCCATTAGACAAATAGTATATTTGCCATTCCCGCG,Distal Intergenic,1,89927956,89931179,3224,2,Gbx2-201,-10365,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,13,14472,ENSMUSG00000034486,conserved gene but different region,1,89941556,89941680,125,*,125,14,0.576,1.489361702,0.112,1.05E-11,CpGisland,TRUE,U13,Hc-P
16637,cg15870367,-0.0000231,0.00000971,-2.375309911,0.018142152,loss,ns,-0.00000797,0.0000165,-0.483088427,0.629373947,neg,ns,-0.000908675,0.004832329,-0.188040715,0.850967762,neg,ns,0.070086892,-0.000127472,0.000166183,-0.767053392,0.443633549,neg,ns,0.76249484,Adamtsl1,Adamtsl1_Intron,4,85717171,85717220,85717219,85717220,50,+,TCCTATTGAACATCTTTTTTGCATTAATTTAGTGATATTTCTCACTGACG,"Intron (Adamtsl1-212/Adamtsl1, intron 1 of 3)",4,85514172,86110862,596691,1,Adamtsl1-212,202999,Adamtsl1-212;Adamtsl1-210,Adamtsl1;Adamtsl1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,10,77739,ENSMUSG00000066113,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24488,cg15613756,0.0000021,0.00000221,0.946512626,0.344624377,gain,ns,-0.00000182,0.00000376,-0.483048913,0.629401971,neg,ns,0.000317123,0.001102252,0.287704241,0.773765382,pos,ns,0.111390704,-0.000024,0.0000379,-0.63284367,0.527302269,neg,ns,0.961705962,Gabpb1,Gabpb1_Exon,2,126639203,126639252,126639251,126639252,50,-,AGCACACCGGGTAAAAGACTCCTTACTTCTATTTCTGCAGATTCCACCCG,"Exon (Gabpb1-206/Gabpb1, exon 8 of 9)",2,126627442,126675568,48127,2,Gabpb1-206,36316,Gabpb1-206;Gabpb1-205;Gabpb1-204;Gabpb1-201;Gabpb1-203,Gabpb1;Gabpb1;Gabpb1;Gabpb1;Gabpb1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,12,14391,ENSMUSG00000027361,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26505,cg05620901,-0.00000852,0.00000164,-5.19366238,0.000000374,loss,yes,0.00000135,0.00000279,0.482918709,0.629494316,pos,ns,-0.000562333,0.0008166,-0.688627285,0.491572868,neg,ns,0.308412096,0.0000232,0.0000281,0.82542464,0.409765292,pos,ns,0.961841022,Adgrl2,Adgrl2_Exon,3,148837628,148837677,148837628,148837629,50,-,CGAGTTTTATTAGTGTCAACCAGCTTGCAGCCCTGGGTAGACCAATATCC,"Exon (Adgrl2-202/Adgrl2, exon 12 of 23)",3,148815586,148954635,139050,2,Adgrl2-202,116958,Adgrl2-202;Adgrl2-208;Adgrl2-205;Adgrl2-217;Adgrl2-220;Adgrl2-215;Adgrl2-204;Adgrl2-212;Adgrl2-213;Adgrl2-214;Adgrl2-206;Adgrl2-209;Adgrl2-207,Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,10,99633,ENSMUSG00000028184,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10338,cg20967010,0.0000351,0.0000164,2.136789169,0.033397722,gain,ns,0.0000135,0.0000279,0.482900441,0.629507273,pos,ns,0.039682041,0.008180166,4.851006761,0.00000195,pos,ns,5.710383716,-0.000959232,0.000281315,-3.409812636,0.000736123,neg,ns,0.489754458,Abca1,Abca1_Exon,4,53072898,53072947,53072898,53072899,50,+,CGATGGTCAGCGTGTCACTCTCATGGTCGCTGCCCAGGCCAGCATCAGAA,"Exon (Abca1-201/Abca1, exon 24 of 50)",4,53030787,53159895,129109,2,Abca1-201,86948,Abca1-201,Abca1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,7,11303,ENSMUSG00000015243,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20802,cg15178575,-0.0000426,0.000013,-3.280850095,0.001152919,loss,ns,0.0000107,0.0000221,0.482814774,0.629568035,pos,ns,-0.000525285,0.006462607,-0.081280618,0.935271239,neg,ns,0.029062421,-0.00000301,0.000222249,-0.013521446,0.989220474,neg,ns,0.789740444,Tmtc2,Tmtc2_Intron,10,105380697,105380746,105380745,105380746,50,-,TATGGTGTTTTGGTTGGCATGGTGACCCATTCTTCCTCATTAAACTAACG,"Intron (Tmtc2-201/Tmtc2, intron 2 of 11)",10,105187663,105574435,386773,2,Tmtc2-201,193689,Tmtc2-201;Tmtc2-205,Tmtc2;Tmtc2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,4,278279,ENSMUSG00000036019,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5230,cg22376496,0.00000843,0.00000497,1.695113128,0.091058104,gain,ns,0.00000408,0.00000845,0.482721786,0.629633992,pos,ns,0.00025122,0.002475107,0.101498609,0.919220278,pos,ns,0.036580403,-0.000184246,0.0000851,-2.164576119,0.031183183,neg,ns,0.89906824,Fgf18,Fgf18_Intergenic_downstream,11,33117119,33117168,33117167,33117168,50,+,AATATAGCTGGTTTTAAAATATTCCCTTATCATTGGTGTACTAGGTCACG,Downstream (<1kb),11,33117430,33146795,29366,2,Fgf18-202,29627,Fgf18-202;Fgf18-201,Fgf18;Fgf18,0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,1,6,14172,ENSMUSG00000057967,conserved gene but different region,11,33117167,33117304,138,*,138,14,0.637681159,1.00625,0.101449275,4.39E-11,CpGisland,TRUE,U11,Tr-P
23553,cg01178121,0.0000343,0.00000264,12.99557699,4.03E-31,gain,yes,0.00000217,0.00000449,0.482691013,0.62965582,pos,ns,0.003930026,0.00131506,2.988476763,0.003027856,pos,ns,2.51886483,0.000036,0.0000452,0.795871574,0.426715688,pos,ns,0.046054096,Sp8,Sp8_Promoter,12,118847168,118847217,118847168,118847169,50,+,CGCCTCCGCGGCACTTCAAAGCCGGAGAGGGAGCTACAATTGTGGTGGAA,Promoter (<=1kb),12,118846329,118852576,6248,1,Sp8-201,839,Sp8-201;Sp8-202,Sp8;Sp8,0;-369,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,27,29,320145,ENSMUSG00000048562,conserved gene and region,12,118846913,118847223,311,*,311,39,0.659163987,1.181472823,0.125401929,3.78E-34,CpGisland,TRUE,U3,Pr-B
21802,cg14205016,0.0000202,0.00000433,4.652713975,0.00000486,gain,ns,-0.00000355,0.00000736,-0.48264138,0.629691027,neg,ns,0.003151208,0.002155525,1.461921309,0.144775732,pos,ns,0.839304231,0.0000204,0.0000741,0.275676392,0.7829803,pos,ns,0.089979191,Lmo1,Lmo1_Promoter,7,109175490,109175539,109175490,109175491,50,-,CGCCATTAGCTTATTTAACTCCAAGGACACTAATTACCCGCAGGGCACGG,Promoter (<=1kb),7,109138675,109175207,36533,2,Lmo1-202,-332,Lmo1-201;Lmo1-202;Lmo1-203,Lmo1;Lmo1;Lmo1,0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,4,66,109594,ENSMUSG00000036111,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
3976,cg02548732,-0.00000479,0.00000178,-2.697108964,0.00737703,loss,ns,0.00000146,0.00000302,0.48263463,0.629695815,pos,ns,0.001947969,0.000883818,2.204038993,0.0282563,pos,ns,1.548884708,-0.0000132,0.0000304,-0.432873553,0.66540764,neg,ns,0.943742958,Nacc2,Nacc2_Intron,2,26097795,26097844,26097795,26097796,50,+,CGTAAGCTTGAAGAGCGTCTCCCTCGGGCATAGTTTAATAACTTAAAAAG,"Intron (Nacc2-201/Nacc2, intron 1 of 5)",2,26055535,26122818,67284,2,Nacc2-201,24974,Nacc2-201;Nacc2-205;Nacc2-206;Nacc2-207,Nacc2;Nacc2;Nacc2;Nacc2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,4,67991,ENSMUSG00000026932,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25923,cg17617717,0.0000248,0.00000474,5.23736688,0.000000301,gain,yes,-0.00000389,0.00000806,-0.482553222,0.629753563,neg,ns,-0.000347806,0.002360015,-0.147374583,0.882932169,neg,ns,0.05407266,0.000061,0.0000812,0.751581959,0.452872703,pos,ns,0.876958391,Gna12,Gna12_Intergenic_upstream,5,140856207,140856256,140856255,140856256,50,-,AATAATGCAGTCCCCGATCAAACCTGCAGCTGTAACTCAGGCCCCAGACG,Distal Intergenic,5,140758408,140830431,72024,2,Gna12-201,-25825,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,14673,ENSMUSG00000000149,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24098,cg15188010,0.000027,0.00000423,6.379017729,6.47E-10,gain,yes,-0.00000347,0.00000719,-0.482506249,0.629786886,neg,ns,0.002574506,0.002107622,1.22152164,0.222816693,pos,ns,0.652052276,0.0000248,0.0000725,0.342812221,0.731972068,pos,ns,0.10170829,Zic2,Zic2_Exon,14,122478163,122478212,122478163,122478164,50,-,CGACAGCAGCCCAGCAGCCTGTGTGATTTTGATAATGCCCCAAATATTTT,"Exon (Zic2-202/Zic2, exon 1 of 2)",14,122475435,122479852,4418,1,Zic2-201,2728,Zic2-201;Zic2-202,Zic2;Zic2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,7,22772,ENSMUSG00000061524,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
5191,cg17659033,-0.00000177,0.00000435,-0.406426573,0.684709628,loss,ns,0.00000357,0.00000739,0.482392561,0.629867538,pos,ns,-0.000650265,0.002165448,-0.300291126,0.764156375,neg,ns,0.116817759,-0.0000486,0.0000745,-0.653173298,0.514128695,neg,ns,0.921576116,Gm5415,Gm5415_Intergenic_upstream,1,32658669,32658718,32658717,32658718,50,-,CCACTTACCACTGTCTAAATGCCTAGTTCTTCAACCTTTGAGTTTCCCCG,Downstream (<1kb),1,32543686,32547294,3609,2,Gm5415-201,-111424,Khdrbs2-201,Khdrbs2,485955,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,Intergenic_upstream,2,2,408191,ENSMUSG00000091318,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22380,cg00112642,0.0000598,0.0000127,4.703612326,0.00000385,gain,ns,0.0000104,0.0000216,0.482314322,0.629923046,pos,ns,0.012882168,0.006328485,2.035584865,0.042642183,pos,ns,1.370160569,-0.000217297,0.000217636,-0.998443115,0.318843242,neg,ns,0.747752863,Atp2b2,Atp2b2_Exon,6,113842261,113842310,113842309,113842310,50,+,ACTCGCCCCCATGGCTCGACTCATTTCTTTGGTTTTTGGAGTAAAAGTCG,"Exon (Atp2b2-203/Atp2b2, exon 4 of 22)",6,113743831,114042026,298196,2,Atp2b2-203,199716,Atp2b2-203;Atp2b2-201;Atp2b2-206;Atp2b2-208;Atp2b2-202;Atp2b2-204;Atp2b2-205;Atp2b2-207,Atp2b2;Atp2b2;Atp2b2;Atp2b2;Atp2b2;Atp2b2;Atp2b2;Atp2b2,0;0;0;0;0;0;68272;200303,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,8,11941,ENSMUSG00000030302,conserved gene and region,6,113842109,113842310,202,*,202,12,0.579207921,0.720142603,0.059405941,0.000000649,CpGisland,TRUE,NA,NRS
18891,cg15343536,0.000100364,0.0000184,5.453742853,0.000000101,gain,yes,-0.0000151,0.0000313,-0.4822884,0.629941436,neg,ns,0.046933146,0.009159283,5.124106864,0.000000527,pos,ns,6.278380867,-0.001239977,0.000314987,-3.936598514,0.000102091,neg,ns,0.4401543,Nfia,Nfia_Intron,4,97840390,97840439,97840438,97840439,50,-,ATCAGCTATTAGTGCCTAATCATATGGTCTATCGATCATGAGATTAATCG,"Intron (Nfia-208/Nfia, intron 2 of 3)",4,97772734,98000466,227733,1,Nfia-208,67656,Nfia-208;Nfia-202;Nfia-203;Nfia-205;Nfia-201;Nfia-204,Nfia;Nfia;Nfia;Nfia;Nfia;Nfia,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,44,18027,ENSMUSG00000028565,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21759,cg08545989,0.00000507,0.00000459,1.10545192,0.269821008,gain,ns,-0.00000376,0.00000779,-0.482263859,0.629958847,neg,ns,0.002792431,0.002283501,1.222872403,0.222306732,pos,ns,0.653047386,-0.000140255,0.0000785,-1.786023306,0.07507279,neg,ns,0.914269297,Zfhx3,Zfhx3_Exon,8,108957014,108957063,108957014,108957015,50,-,CGGCGAGCCCGGTGGAGGGTCCCAAAGACCCCAGCTGCCCCAAGGACAGT,"Exon (Zfhx3-204/Zfhx3, exon 16 of 16)",8,107942644,108961630,1018987,1,Zfhx3-204,1014370,Zfhx3-204;Zfhx3-201,Zfhx3;Zfhx3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,46,177,11906,ENSMUSG00000038872,conserved gene and region,8,108956951,108957024,74,*,74,9,0.608108108,1.316205534,0.121621622,6.35E-08,CpGisland,TRUE,NA,NRS
20591,cg24406686,0.0000093,0.00000373,2.494109557,0.013148023,gain,ns,-0.00000306,0.00000634,-0.482260938,0.62996092,neg,ns,0.001090232,0.001855976,0.587417265,0.557351105,pos,ns,0.253871133,0.000148787,0.0000638,2.331097509,0.020389095,pos,ns,0.104073987,Wnt3,Wnt3_fiveUTR,11,103774188,103774237,103774236,103774237,50,-,GTGGACTTTGTTCCAACTATTGGGGGCGTCGCTCCCCCTCTTCATGGTCG,Promoter (<=1kb),11,103774150,103817957,43808,1,Wnt3-201,38,Wnt3-201,Wnt3,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,9,22415,ENSMUSG00000000125,conserved gene and region,11,103774214,103774329,116,*,116,9,0.655172414,0.776785714,0.077586207,0.00000318,CpGisland,TRUE,U13,Hc-P
1159,cg23178342,-0.0000753,0.0000227,-3.313589108,0.00103016,loss,ns,0.0000186,0.0000386,0.482208307,0.629998261,pos,ns,0.059039519,0.01130965,5.220278162,0.000000328,pos,ns,6.484165883,-0.001182265,0.000388938,-3.039725435,0.002569735,neg,ns,0.522981055,Grb10,Grb10_threeUTR,11,11930552,11930601,11930600,11930601,50,+,CAGTCCCTTATTTGTACAAAAATACCTGAAAGTTTACAATTAGGTTCACG,3' UTR,11,11930508,12027971,97464,2,Grb10-203,97370,Grb10-203;Grb10-201;Grb10-202,Grb10;Grb10;Grb10,0;0;40041,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,2,14783,ENSMUSG00000020176,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21863,cg26939636,-0.00000415,0.00000156,-2.659892954,0.008223011,loss,ns,0.00000128,0.00000265,0.48208168,0.630088106,pos,ns,0.000478606,0.00077694,0.616013203,0.538337846,pos,ns,0.268945088,-0.0000589,0.0000267,-2.205718811,0.028137174,neg,ns,0.962944952,Lmo1,Lmo1_Intergenic_upstream,7,109261998,109262047,109261998,109261999,50,+,CGGGAAATATATTGATTCAATTATACACTGATGACAAATGAACTCAAAGA,Distal Intergenic,7,109138675,109175207,36533,2,Lmo1-202,-86791,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,34,66,109594,ENSMUSG00000036111,mapped to different genes,7,109261896,109261999,104,*,104,9,0.567307692,1.090909091,0.086538462,0.00000128,CpGisland,TRUE,U15,NS
14658,cg11817012,0.000196574,0.0000148,13.24707302,4.77E-32,gain,yes,0.0000122,0.0000252,0.482051183,0.630109745,pos,ns,0.020269971,0.00738555,2.744544535,0.006412766,pos,ns,2.192954575,-0.000413111,0.000253988,-1.626494997,0.104860435,neg,ns,0.673767901,Rbfox2,Rbfox2_Exon,15,77105600,77105649,77105648,77105649,50,+,CGGTGCCGTGTAATTTCTCCCTGGCCCTGTCTGCATCAGCACTATTCTCG,"Exon (Rbfox2-204/Rbfox2, exon 6 of 14)",15,77078990,77306928,227939,2,Rbfox2-204,201279,Rbfox2-204;Rbfox2-203;Rbfox2-202;Rbfox2-206;Rbfox2-208;Rbfox2-209;Rbfox2-201;Rbfox2-207;Rbfox2-212;Rbfox2-213,Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,20,93686,ENSMUSG00000033565,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10521,cg07662116,-0.00000044,0.000000768,-0.572602787,0.56732872,loss,ns,0.000000629,0.00000131,0.481987308,0.630155069,pos,ns,0.00067608,0.000382421,1.767892447,0.0780625,pos,ns,1.107557542,-0.0000315,0.0000132,-2.398886991,0.017035405,neg,ns,0.979394437,Shoc2,Shoc2_Exon,19,53988194,53988243,53988194,53988195,50,-,CGGATGCTTGATTTACGGCATAATAAACTGAGAGAAATTCCTTCAGTGGT,"Exon (Shoc2-202/Shoc2, exon 2 of 9)",19,53944306,54032867,88562,1,Shoc2-202,43888,Shoc2-202;Shoc2-201;Shoc2-205;Shoc2-203;Shoc2-207,Shoc2;Shoc2;Shoc2;Shoc2;Shoc2,0;0;43309;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,56392,ENSMUSG00000024976,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11498,cg10188646,-0.00000114,0.00000215,-0.528840756,0.597294355,loss,ns,-0.00000176,0.00000365,-0.481964781,0.630171054,neg,ns,-0.000328298,0.001069007,-0.307105191,0.758969502,neg,ns,0.119775675,-0.0000371,0.0000368,-1.008980637,0.31377081,neg,ns,0.94268664,Nptn,Nptn_Exon,9,58618770,58618819,58618818,58618819,50,-,GCAGAAGTCAACCGGGCAGAGTCTTTCAGACAGCTGTGGGACGGTGCTCG,"Exon (Nptn-212/Nptn, exon 2 of 8)",9,58582240,58651318,69079,1,Nptn-212,36530,Nptn-212;Nptn-201;Nptn-213;Nptn-206;Nptn-203;Nptn-202;Nptn-211;Nptn-207;Nptn-204,Nptn;Nptn;Nptn;Nptn;Nptn;Nptn;Nptn;Nptn;Nptn,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,20,22,20320,ENSMUSG00000032336,conserved gene and region,9,58618678,58618932,255,*,255,20,0.6,0.879917184,0.078431373,1.96E-13,CpGisland,TRUE,NA,NRS
1329,cg27564792,0.0000163,0.00000355,4.594956357,0.00000631,gain,ns,0.00000291,0.00000603,0.481939948,0.630188675,pos,ns,0.005028144,0.001766587,2.84624742,0.00471868,pos,ns,2.326179466,-0.0000969,0.0000608,-1.595088326,0.111711434,neg,ns,0.072553528,Fezf2,Fezf2_fiveUTR,14,12346785,12346834,12346785,12346786,50,-,CGTGGAACCGGGTTTTGTGTTTTTCTAAAATAAAGAGAAGGATTATCAGA,5' UTR,14,12343388,12348189,4802,2,Fezf2-202,1355,Fezf2-203;Fezf2-201;Fezf2-202,Fezf2;Fezf2;Fezf2,0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,13,45,54713,ENSMUSG00000021743,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13289,cg09031270,-0.0000156,0.00000432,-3.611808249,0.000354561,loss,ns,0.00000353,0.00000733,0.481871261,0.630237416,pos,ns,-0.004688257,0.002147766,-2.182853103,0.029796606,neg,ns,1.525833207,0.000130625,0.0000739,1.768508703,0.077959306,pos,ns,0.925199006,Gm44690,Gm44690_Intergenic_upstream,7,70003804,70003853,70003804,70003805,50,+,CGCCACAGAGCTGGCGGCTTTTATTTATGGAGCCAAGAAAATGAATGGGT,Distal Intergenic,7,69883979,69884360,382,2,Gm44690-201,-119444,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,15,24,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
507,cg26218406,-0.0000839,0.0000119,-7.033495427,1.29E-11,loss,yes,0.00000977,0.0000203,0.481842401,0.630257895,pos,ns,-0.002932477,0.0059385,-0.49380775,0.621791644,neg,ns,0.206355119,-0.000158848,0.000204225,-0.777809906,0.437274291,neg,ns,0.538489643,1700008P02Rik,1700008P02Rik_Intergenic_upstream,3,6681615,6681664,6681615,6681616,50,+,CGTATTTTGAGGTTTGATAACTGCTATCAATCTCGATAATGGGTATCCAA,Distal Intergenic,3,6615418,6620443,5026,2,1700008P02Rik-201,-61172,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,69347,ENSMUSG00000069118,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17372,cg08228149,0.0000523,0.00000979,5.343717419,0.000000177,gain,yes,-0.00000802,0.0000166,-0.481841671,0.630258413,neg,ns,0.006399883,0.004874381,1.312963396,0.190166369,pos,ns,0.720866286,-0.000339142,0.00016763,-2.02316277,0.043914296,neg,ns,0.7614526,Gbx2,Gbx2_Intergenic_downstream,1,89925768,89925817,89925768,89925769,50,+,CGGGATGGAATAAAAAGCTGAGGTGCTGGCCGAGCCTCGTGGGTCTCATT,Downstream (2-3kb),1,89927966,89929185,1220,2,Gbx2-202,3368,Gbx2-201;Gbx2-202,Gbx2;Gbx2,0;3368,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,5,13,14472,ENSMUSG00000034486,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
20534,cg00166917,-0.0000423,0.00000805,-5.256120464,0.000000274,loss,yes,0.00000659,0.0000137,0.481837045,0.630261696,pos,ns,-0.003564765,0.004006414,-0.889764501,0.374282308,neg,ns,0.426800702,0.0000164,0.00013778,0.118961801,0.90538267,pos,ns,0.917323807,Trim33,Trim33_Exon,3,103310320,103310369,103310320,103310321,50,+,CGGTGCCCAGTATGCCGCCAAGAATGCAGACAGATAGACCTTGTGGATAA,"Exon (Trim33-201/Trim33, exon 2 of 20)",3,103279293,103358775,79483,1,Trim33-201,31027,Trim33-201;Trim33-202;Trim33-205,Trim33;Trim33;Trim33,0;0;-1070,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,5,94093,ENSMUSG00000033014,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7151,cg23743143,-0.00000634,0.00000597,-1.061534223,0.28927348,loss,ns,-0.00000489,0.0000102,-0.481810429,0.630280583,neg,ns,-0.0059996,0.002973763,-2.01751114,0.044503636,neg,ns,1.351604505,0.000162566,0.000102267,1.58962013,0.112939746,pos,ns,0.090190155,Lcor,Lcor_Intron,19,41483934,41483983,41483982,41483983,50,-,TGTCCATTCAGCGGCAATTTCATGCGGTGAGAAGTTCTCTTTGTTGTGCG,"Intron (Lcor-201/Lcor, intron 2 of 7)",19,41482637,41562261,79625,1,Lcor-201,1297,Lcor-201;Lcor-204;Lcor-206,Lcor;Lcor;Lcor,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,25,212391,ENSMUSG00000025019,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
4980,cg20144788,-0.00000394,0.00000168,-2.350639705,0.019367477,loss,ns,0.00000137,0.00000285,0.481752158,0.630321936,pos,ns,0.003098372,0.000834874,3.71118458,0.000244476,pos,ns,3.611764429,-0.000130654,0.0000287,-4.550605203,0.00000769,neg,ns,0.051393454,Prdm12,Prdm12_Intron,2,31641258,31641307,31641258,31641259,50,+,CGCCGGGTATTTTCCCAGGTAGCTTAGAGGGGAACCTTGTAAGACATGGA,"Intron (Prdm12-201/Prdm12, intron 1 of 4)",2,31640037,31655795,15759,1,Prdm12-201,1221,Prdm12-201,Prdm12,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,10,381359,ENSMUSG00000079466,conserved gene and region,2,31641159,31641262,104,*,104,12,0.586538462,1.386666667,0.115384615,3.14E-10,CpGisland,TRUE,U13,Hc-P
4888,cg15292174,-0.00000101,0.00000153,-0.661765142,0.508613346,loss,ns,0.00000125,0.0000026,0.481705203,0.630355258,pos,ns,0.002118392,0.000762237,2.779177812,0.005782359,pos,ns,2.237894922,-0.0000769,0.0000262,-2.932521097,0.003612658,neg,ns,0.042545306,Snx17,Snx17_fiveUTR,5,31193863,31193912,31193911,31193912,50,+,CCTCAGGCCTATAACATTCACGTGAATGGAGTCCTGCACTGTCGGGTGCG,Promoter (<=1kb),5,31193227,31198900,5674,1,Snx17-201,636,Eif2b4-201;Eif2b4-203;Eif2b4-212;Eif2b4-202;Eif2b4-204;Eif2b4-211;Eif2b4-207;Eif2b4-205;Eif2b4-206;Eif2b4-208;Eif2b4-210;Eif2b4-209;Snx17-201;Snx17-205;Snx17-202;Snx17-204;Snx17-210;Snx17-208;Snx17-207;Snx17-211;Snx17-209;Snx17-206;Snx17-203,Eif2b4;Eif2b4;Eif2b4;Eif2b4;Eif2b4;Eif2b4;Eif2b4;Eif2b4;Eif2b4;Eif2b4;Eif2b4;Eif2b4;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17,-433;-724;-855;-849;-2216;-3002;-3947;-2712;-2664;-724;-864;-445;0;0;0;0;0;0;0;-931;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,4,266781,ENSMUSG00000029146,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
6962,cg24209982,0.00000041,0.00000697,0.058882818,0.953083382,gain,ns,0.0000057,0.0000118,0.481641692,0.630400331,pos,ns,-0.007567463,0.003467601,-2.182333821,0.029835253,neg,ns,1.525270273,0.00015482,0.000119251,1.298279063,0.195156485,pos,ns,0.832435888,Lsamp,Lsamp_Intron,16,40228836,40228885,40228836,40228837,50,-,CGTGGTAGCCATAAATCCTGGCAGACGTTGCAGTCTGGCAGTGTGAATGA,"Intron (Lsamp-207/Lsamp, intron 1 of 2)",16,39984361,40979709,995349,1,Lsamp-207,244475,Lsamp-207;Lsamp-206;Lsamp-208;Lsamp-210;Lsamp-209,Lsamp;Lsamp;Lsamp;Lsamp;Lsamp,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,23,268890,ENSMUSG00000061080,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27165,cg14802431,0.00000157,0.00000383,0.410290128,0.681876547,gain,ns,-0.00000313,0.00000651,-0.481632781,0.630406655,neg,ns,-0.004008447,0.001906334,-2.102698908,0.036298137,neg,ns,1.440115663,0.0000371,0.0000656,0.566645171,0.5713653,pos,ns,0.931284011,Tnr,Tnr_Exon,1,159858234,159858283,159858282,159858283,50,+,AATGGGACGGGCCGATGGCAGTGACGGAATATGTGATCTCTTACCAGCCG,"Exon (Tnr-202/Tnr, exon 5 of 23)",1,159523769,159931729,407961,1,Tnr-202,334465,Tnr-202;Tnr-201;Tnr-203,Tnr;Tnr;Tnr,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,13,21960,ENSMUSG00000015829,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
354,cg12724076,-0.0000166,0.00000648,-2.561496267,0.010895107,loss,ns,-0.0000053,0.000011,-0.48162837,0.630409785,neg,ns,-0.004700842,0.003224434,-1.457881406,0.145885541,neg,ns,0.835987749,0.0000533,0.000110888,0.480265004,0.631377686,pos,ns,0.924766584,Zfhx4,Zfhx4_Intron,3,5236501,5236550,5236549,5236550,50,-,CTTAATTACCTTCTCCCCTTTGTCGTGACATGGGTGGAAAGTTTTTGCCG,"Intron (Zfhx4-203/Zfhx4, intron 1 of 10)",3,5218526,5413165,194640,1,Zfhx4-203,17975,Zfhx4-203;Zfhx4-202;Zfhx4-201;Zfhx4-204,Zfhx4;Zfhx4;Zfhx4;Zfhx4,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,27,77,80892,ENSMUSG00000025255,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14426,cg06920520,-0.0000337,0.00000744,-4.532393677,0.00000834,loss,ns,0.00000609,0.0000126,0.481578994,0.630444828,pos,ns,-0.007387202,0.003705067,-1.993810325,0.047048649,neg,ns,1.327452847,0.0000235,0.000127417,0.184174325,0.853997118,pos,ns,0.898065844,Slc43a2,Slc43a2_Exon,11,75563025,75563074,75563073,75563074,50,-,CACAAGATCACAGGGAAGCAGTTCTACAAGCAGGTGACCACGGTGGGCCG,"Exon (Slc43a2-202/Slc43a2, exon 8 of 14)",11,75531698,75573883,42186,1,Slc43a2-202,31327,Slc43a2-202;Slc43a2-201;Slc43a2-211;Slc43a2-208;Slc43a2-206;Slc43a2-204;Slc43a2-210,Slc43a2;Slc43a2;Slc43a2;Slc43a2;Slc43a2;Slc43a2;Slc43a2,0;0;0;0;-2933;-3629;-3742,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,215113,ENSMUSG00000038178,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5122,cg19648354,-0.000000126,0.00000128,-0.09844223,0.921644765,loss,ns,-0.00000105,0.00000217,-0.481562064,0.630456844,neg,ns,-0.000393606,0.000635972,-0.618904043,0.536434098,neg,ns,0.270483624,-0.00000216,0.0000219,-0.09865102,0.921479118,neg,ns,0.961567384,Ubxn7,Ubxn7_Exon,16,32381364,32381413,32381364,32381365,50,-,CGCTCAGATGAAGAATCTGAATCTGAACTTTTTTCTGGCAGTGAGGAGTT,"Exon (Ubxn7-201/Ubxn7, exon 9 of 11)",16,32332257,32393747,61491,1,Ubxn7-201,49107,Ubxn7-201;Ubxn7-203,Ubxn7;Ubxn7,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,224111,ENSMUSG00000053774,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27278,cg04084271,-0.00000244,0.00000145,-1.674819672,0.094978054,loss,ns,0.00000119,0.00000247,0.481551728,0.630464179,pos,ns,0.00132183,0.000724158,1.825334685,0.06891262,pos,ns,1.161701238,-0.0000436,0.0000249,-1.752121484,0.080741645,neg,ns,0.963726152,Gtsf1l,Gtsf1l_Intergenic_upstream,2,163111810,163111859,163111858,163111859,50,-,GCAAAATAATGTAAAAATAATGAGCTCCTATTCCCCTTTGATGTGCAGCG,Distal Intergenic,2,163087034,163087855,822,2,Gtsf1l-201,-24004,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,5,68236,ENSMUSG00000070708,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9447,cg24419017,-0.0000189,0.00000554,-3.414934597,0.000722916,loss,ns,0.00000453,0.00000941,0.481545285,0.630468752,pos,ns,-0.004729419,0.00275616,-1.715945209,0.087171145,neg,ns,1.059627251,0.000113384,0.0000948,1.196231902,0.232520198,pos,ns,0.891391288,Gm46453,Gm46453_Intron,14,48771140,48771189,48771188,48771189,50,-,ATTGCTAACATTTTCTCTCTAATTATGGTTCAGTTTGGCTAGGATTTCCG,"Intron (Otx2os1-206/Otx2os1-206, intron 2 of 4)",14,48834168,48834534,367,2,Gm46453-201,63394,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,9,108168159,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14782,cg18722805,0.0000883,0.00000981,9.006064652,2.22E-17,gain,yes,-0.00000802,0.0000167,-0.481494502,0.630504795,neg,ns,0.006676847,0.004881193,1.36787214,0.172342841,pos,ns,0.763606752,0.000247227,0.000167864,1.472781675,0.141824483,pos,ns,0.164863945,Gm11146,Gm11146_Intron,16,77644629,77644678,77644629,77644630,50,+,CGTGGAGGGTAAAAGCCAGTCAGTCAGTGAGAAGCAAAGGTACGTTGGAG,"Intron (Mir99ahg-211/Mir99ahg-211, intron 5 of 6)",16,77588578,77602094,13517,2,Gm11146-201,-42535,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,21,,NA,mapped to different genes,16,77644447,77644630,184,*,184,18,0.619565217,1.024435509,0.097826087,7.25E-14,CpGisland,TRUE,NA,NRS
20926,cg10113893,-0.000000632,0.000000947,-0.667460513,0.504974578,loss,ns,0.000000775,0.00000161,0.481465054,0.630525695,pos,ns,0.000469597,0.000471374,0.996229778,0.319915491,pos,ns,0.494964731,-0.0000213,0.0000162,-1.315453118,0.189329744,neg,ns,0.973111242,Elp4,Elp4_Intron,2,105719479,105719528,105719479,105719480,50,+,CGGTCCTTTTGATTTAAAGGAAAAGTTTCAGAAATGGACTAAAACGTTGA,"Intron (Elp4-202/Elp4, intron 9 of 9)",2,105701027,105904564,203538,2,Elp4-202,185036,Elp4-202,Elp4,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,16,77766,ENSMUSG00000027167,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4785,cg20149366,-0.00000517,0.00000301,-1.720711152,0.086301073,loss,ns,0.00000246,0.00000511,0.481289357,0.630650403,pos,ns,-0.004445312,0.001496101,-2.97126441,0.003197778,neg,ns,2.495151704,0.0000694,0.0000515,1.349060453,0.178302097,pos,ns,0.94072988,Prkg1,Prkg1_threeUTR,19,30569068,30569117,30569116,30569117,50,-,TCATCTAAGCGGTAAGTCCTAATGCCACTGTAGTTACTGGAGCAGCATCG,3' UTR,19,30564489,31765033,1200545,2,Prkg1-201,1195916,Prkg1-201;Prkg1-208;Prkg1-202;Prkg1-207;Prkg1-204,Prkg1;Prkg1;Prkg1;Prkg1;Prkg1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,13,19091,ENSMUSG00000052920,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19185,cg07266476,-0.000000573,0.00000306,-0.187131621,0.85167985,loss,ns,-0.00000251,0.00000521,-0.481213328,0.630704371,neg,ns,0.003883981,0.001525235,2.546480775,0.011364898,pos,ns,1.944434441,-0.000171091,0.0000525,-3.261822079,0.001230374,neg,ns,0.908602846,Gm32308,Gm32308_Intergenic_downstream,6,98767752,98767801,98767752,98767753,50,-,CGTATTAATTTGTCTAACGTTTAAGTTCTTACAAAGGAAGAGACAAGCAT,Distal Intergenic,6,98757749,98758028,280,1,Gm32308-201,10052,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,10,102634810,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6123,cg17434149,0.00000369,0.00000184,2.002533617,0.046097979,gain,ns,-0.00000151,0.00000313,-0.481188133,0.630722255,neg,ns,0.000892947,0.000918128,0.972573088,0.331523783,pos,ns,0.479485311,-0.0000403,0.0000316,-1.277310662,0.202448396,neg,ns,0.088897229,Lhx6,Lhx6_Promoter,2,36104899,36104948,36104947,36104948,50,+,TTTTTGAGAAATTCCTCCAACATTTGCATAATGTGTTCCCGCTTTCCGCG,Promoter (<=1kb),2,36081953,36105271,23319,2,Lhx6-201,323,Lhx6-202;Lhx6-204;Lhx6-201;Lhx6-205;Lhx6-203;Lhx6-208;Lhx6-209;Lhx6-207,Lhx6;Lhx6;Lhx6;Lhx6;Lhx6;Lhx6;Lhx6;Lhx6,0;0;0;0;0;0;-1307;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,3,9,16874,ENSMUSG00000026890,conserved gene and region,2,36104938,36105370,433,*,433,45,0.755196305,0.744270435,0.103926097,2.94E-35,CpGisland,TRUE,U3,Pr-B
1620,cg18470619,-0.00000836,0.00000463,-1.806412649,0.071823575,loss,ns,0.00000378,0.00000787,0.481093883,0.630789161,pos,ns,-0.001000501,0.002304463,-0.434158167,0.664475603,neg,ns,0.17752096,-0.0000707,0.0000793,-0.892397524,0.37287208,neg,ns,0.868084746,Runx1t1,Runx1t1_threeUTR,4,13892444,13892493,13892492,13892493,50,-,GCTACGAAGGGTTAAATAATCCCAAAAATGAGGTATGTCATACCCACACG,3' UTR,4,13743436,13893649,150214,1,Runx1t1-201,149008,Runx1t1-201;Runx1t1-204;Runx1t1-203;Runx1t1-202;Runx1t1-205,Runx1t1;Runx1t1;Runx1t1;Runx1t1;Runx1t1,0;0;0;0;3224,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,24,12395,ENSMUSG00000006586,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24059,cg00988050,0.00000894,0.00000313,2.856103233,0.004578338,gain,ns,-0.00000256,0.00000532,-0.4809997,0.630856021,neg,ns,-0.003701357,0.001557818,-2.375987305,0.018109492,neg,ns,1.742093734,0.0000954,0.0000536,1.780290302,0.076007813,pos,ns,0.944767442,Clybl,Clybl_Intron,14,122367280,122367329,122367328,122367329,50,-,AATCCCTGGAAGTTTGGAACTAATGAACTGACTGCTGAGCTGCCGCCACG,"Intron (Clybl-201/Clybl, intron 2 of 7)",14,122181704,122402234,220531,1,Clybl-201,185576,Clybl-201;Clybl-202,Clybl;Clybl,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,13,69634,ENSMUSG00000025545,mapped to different genes,14,122367319,122367490,172,*,172,14,0.552325581,1.076923077,0.081395349,9.34E-10,CpGisland,TRUE,U15,NS
20597,cg14025349,-0.0000461,0.00000984,-4.683655552,0.00000422,loss,ns,0.00000804,0.0000167,0.480995967,0.630858671,pos,ns,-0.009471739,0.004895884,-1.93463317,0.053944963,neg,ns,1.268049102,0.000258873,0.000168369,1.537532691,0.125182945,pos,ns,0.781411115,Hipk1,Hipk1_Exon,3,103778205,103778254,103778253,103778254,50,+,CCAGCCAGAGGGCTCTATTTTCAGTTTCTTCGCACTGCAGAAGGCACTCG,"Exon (Gm15886-201/Gm15886-201, exon 6 of 7)",3,103739815,103791563,51749,2,Hipk1-203,13309,Hipk1-203;Hipk1-202;Hipk1-201;Hipk1-206;Hipk1-205,Hipk1;Hipk1;Hipk1;Hipk1;Hipk1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,11,15257,ENSMUSG00000008730,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10589,cg04199297,-0.00000174,0.000000903,-1.931250841,0.054363501,loss,ns,-0.000000738,0.00000153,-0.480854237,0.630959291,neg,ns,-0.000202388,0.000449429,-0.450323448,0.652792001,neg,ns,0.185225176,-0.0000171,0.0000155,-1.103956126,0.270468342,neg,ns,0.018869054,Faf2,Faf2_fiveUTR,13,54621800,54621849,54621848,54621849,50,+,TGACGGTGCGGACGGGTCAGGAGCGTAGAGGCGGCGGCAAAATGGCGGCG,Promoter (<=1kb),13,54621801,54644609,22809,1,Faf2-209,0,Faf2-203;Faf2-209;Faf2-204;Faf2-201;Faf2-206;Faf2-205;Faf2-202,Faf2;Faf2;Faf2;Faf2;Faf2;Faf2;Faf2,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,6,76577,ENSMUSG00000025873,conserved gene but different region,13,54621633,54621968,336,*,336,36,0.663690476,1.031202046,0.107142857,7.99E-29,CpGisland,TRUE,U1,Pr-A
3351,cg07324453,-0.0000158,0.00000656,-2.411859565,0.016452201,loss,ns,-0.00000536,0.0000111,-0.480721632,0.631053439,neg,ns,0.011831954,0.003265748,3.623045854,0.000340103,pos,ns,3.468389486,-0.00039264,0.000112309,-3.496075013,0.00054108,neg,ns,0.169585305,Srrm2,Srrm2_Exon,17,23807087,23807136,23807087,23807088,50,-,CGGCGCCTGGAGGCTGCCCTGGTGAAGCGGCCTAATCCTGACATCCTGGA,"Exon (Srrm2-206/Srrm2, exon 3 of 5)",17,23790662,23808518,17857,1,Srrm2-206,16425,Srrm2-206;Srrm2-210;Srrm2-201;Srrm2-212;Srrm2-211;Srrm2-208;Srrm2-203;Srrm2-207,Srrm2;Srrm2;Srrm2;Srrm2;Srrm2;Srrm2;Srrm2;Srrm2,0;0;0;0;0;0;0;-4764,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,13,75956,ENSMUSG00000039218,conserved gene and region,17,23806919,23807174,256,*,256,25,0.6953125,0.810536981,0.09765625,4.40E-19,CpGisland,TRUE,NA,NRS
16115,cg12135913,0.0000237,0.00000297,7.985732888,2.76E-14,gain,yes,0.00000242,0.00000504,0.480712565,0.631059877,pos,ns,0.003192176,0.001476946,2.161335884,0.031434723,pos,ns,1.502590363,-0.0000417,0.0000508,-0.820423769,0.412604969,neg,ns,0.085596771,Pcdh17,Pcdh17_fiveUTR,14,84444773,84444822,84444821,84444822,50,-,GCACTTGACAGCCCAGCCCTGTGAATGCAGAGACTGTTTCCCTTCTAGCG,5' UTR,14,84443563,84539002,95440,1,Pcdh17-201,1210,Pcdh17-201;Pcdh17-202,Pcdh17;Pcdh17,0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,13,219228,ENSMUSG00000035566,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
25726,cg01646475,-0.00000104,0.00000735,-0.141775302,0.887349585,loss,ns,-0.00000601,0.0000125,-0.480685853,0.631078843,neg,ns,-0.007764091,0.003660306,-2.121158771,0.034701857,neg,ns,1.459647285,0.000221371,0.000125878,1.75862383,0.079628084,pos,ns,0.107057917,Lhx9,Lhx9_Exon,1,138831444,138831493,138831492,138831493,50,+,CTACAGTGATAGTGGGATTGGTCAGGTCTGTTAAAGTGGTCGCAGTGCCG,"Exon (Lhx9-202/Lhx9, exon 7 of 7)",1,138825186,138842457,17272,2,Lhx9-201,10964,Lhx9-201;Lhx9-203;Lhx9-205;Lhx9-202;Lhx9-204;Lhx9-206;Lhx9-207,Lhx9;Lhx9;Lhx9;Lhx9;Lhx9;Lhx9;Lhx9,0;0;0;0;0;2166;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,12,16876,ENSMUSG00000019230,conserved gene and region,1,138831484,138831610,127,*,127,12,0.62992126,0.954887218,0.094488189,3.59E-09,CpGisland,TRUE,NA,NRS
3556,cg17455697,-0.00000231,0.00000099,-2.330856221,0.020401999,loss,ns,-0.000000808,0.00000168,-0.480460129,0.631239121,neg,ns,0.000558916,0.000492564,1.134706754,0.257374825,pos,ns,0.589433936,-0.000022,0.0000169,-1.297771607,0.195330641,neg,ns,0.975118934,Agap3,Agap3_Intron,5,24495322,24495371,24495370,24495371,50,-,AGCATCAAATTCGACAATTACAGTGCACACTGATTGTGGGATTGCAGGCG,"Intron (Agap3-201/Agap3, intron 11 of 17)",5,24452177,24502047,49871,1,Agap3-201,43145,Agap3-201;Agap3-202,Agap3;Agap3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,13,213990,ENSMUSG00000023353,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22232,cg14664922,-0.00000363,0.00000207,-1.756451134,0.079998765,loss,ns,-0.00000169,0.00000351,-0.480445051,0.631249828,neg,ns,-0.00122511,0.001029308,-1.190226377,0.234868103,neg,ns,0.629175959,0.0000318,0.0000354,0.898950729,0.369376617,pos,ns,0.935810183,Usp47,Usp47_Exon,7,112104354,112104403,112104354,112104355,50,-,CGTCTAAGGAAAAAAACATGGAAGAATCCTGGCACTGTCTTTTTGGATTA,"Exon (Usp47-201/Usp47, exon 24 of 28)",7,112023504,112111384,87881,1,Usp47-201,80850,Usp47-201;Usp47-206;Usp47-202,Usp47;Usp47;Usp47,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,4,74996,ENSMUSG00000059263,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2969,cg05103983,-0.00000648,0.00000471,-1.377898866,0.16922832,loss,ns,-0.00000384,0.00000799,-0.480443193,0.631251147,neg,ns,-0.004027522,0.002341734,-1.719888342,0.08645078,neg,ns,1.063231084,0.00000241,0.0000805,0.029907764,0.976159859,pos,ns,0.592402837,Lrmda,Lrmda_Intron,14,22198580,22198629,22198580,22198581,50,-,CGTTACATTGATGGCGTGGACTGACAGTTATTAATGATTGTTATGATAAA,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,178868,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206,Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25651,cg23574150,-0.00000212,0.00000143,-1.488203805,0.137713667,loss,ns,0.00000116,0.00000242,0.480274294,0.631371089,pos,ns,0.000310513,0.000710132,0.437261691,0.662226027,pos,ns,0.178993754,0.0000014,0.0000244,0.057414723,0.954251825,pos,ns,0.038932217,Eif4g3,Eif4g3_Promoter,4,137993910,137993959,137993958,137993959,50,-,CGGTCCCGCTCTGGGGGGGTTGGTGGCTTCGCTTTGCCATGAGTTTACCG,Promoter (<=1kb),4,137993022,138105419,112398,1,Eif4g3-210,888,Eif4g3-210;Eif4g3-201;Eif4g3-204;Eif4g3-203;Eif4g3-202;Eif4g3-205;Eif4g3-206;Eif4g3-207;Eif4g3-215,Eif4g3;Eif4g3;Eif4g3;Eif4g3;Eif4g3;Eif4g3;Eif4g3;Eif4g3;Eif4g3,0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,1,10,230861,ENSMUSG00000028760,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
22761,cg07284967,0.0000623,0.000013,4.80745735,0.00000239,gain,ns,0.0000106,0.000022,0.480182996,0.631435927,pos,ns,-0.004220729,0.006450641,-0.654311639,0.513396169,neg,ns,0.289547376,0.000397351,0.000221837,1.791185911,0.074238891,pos,ns,0.746515138,Dmbx1,Dmbx1_Intron,4,115931905,115931954,115931953,115931954,50,+,AGTCCACTGCACACTCCAAACAGAATCAATTATATATTTAAAAGGTGCCG,"Intron (Dmbx1-203/Dmbx1, intron 1 of 4)",4,115915119,115939926,24808,2,Dmbx1-203,7972,Dmbx1-203;Dmbx1-202,Dmbx1;Dmbx1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,42,140477,ENSMUSG00000028707,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
1842,cg21904140,-0.0000134,0.00000308,-4.347298074,0.0000187,loss,ns,0.00000251,0.00000523,0.480131021,0.631472839,pos,ns,-0.002109153,0.00153195,-1.37677692,0.169574699,neg,ns,0.770638946,-0.0000373,0.0000527,-0.707542431,0.479761029,neg,ns,0.913602987,Gli3,Gli3_Intron,13,15543727,15543776,15543775,15543776,50,+,TATATGCACTATTATTGCAAGAAGTATTCCGAAATACCAGAAATAGGACG,"Intron (Gli3-202/Gli3, intron 2 of 11)",13,15463235,15715091,251857,1,Gli3-202,80492,Gli3-202;Gli3-204;Gli3-203;Gli3-201,Gli3;Gli3;Gli3;Gli3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,19,21,14634,ENSMUSG00000021318,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17869,cg18824677,-0.00000196,0.00000153,-1.276020439,0.20290351,loss,ns,0.00000125,0.00000261,0.480074358,0.631513083,pos,ns,0.000313265,0.000763931,0.410069971,0.682037864,pos,ns,0.166191514,0.0000116,0.0000263,0.442885883,0.658157162,pos,ns,0.047199799,Phf21a,Phf21a_fiveUTR,2,92185451,92185500,92185499,92185500,50,+,TCCCAACACTTCTCGTCATCCTCTCTTTGGTCTCTTTATTCTGCTGAGCG,Promoter (<=1kb),2,92185459,92221592,36134,1,Phf21a-210,0,Phf21a-201;Phf21a-202;Phf21a-204;Phf21a-209;Phf21a-208;Phf21a-207;Phf21a-212;Phf21a-219;Phf21a-206;Phf21a-216;Phf21a-221;Phf21a-220;Phf21a-210;Phf21a-205;Phf21a-211,Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,21,192285,ENSMUSG00000058318,conserved gene and region,2,92185194,92185538,345,*,345,36,0.67826087,0.920477285,0.104347826,2.24E-28,CpGisland,TRUE,U1,Pr-A
22155,cg14687245,-0.00000789,0.00000231,-3.40776266,0.000741472,loss,ns,0.00000189,0.00000393,0.479990888,0.631572368,pos,ns,-0.000598735,0.001152015,-0.519728733,0.603623562,neg,ns,0.219233816,-0.000033,0.0000396,-0.832319847,0.405869151,neg,ns,0.946376927,Agbl4,Agbl4_Exon,4,111448609,111448658,111448609,111448610,50,-,CGCTCCTGCGCCTGTCATGGACAAGTATATCCTAGACAATGGCAAGGTAG,"Exon (Bend5-201/Bend5, exon 4 of 6)",4,110397698,111567010,1169313,1,Agbl4-205,1050911,Agbl4-205;Agbl4-206;Agbl4-201;Agbl4-202;Agbl4-209;Bend5-201;Bend5-203;Bend5-206;Bend5-202,Agbl4;Agbl4;Agbl4;Agbl4;Agbl4;Bend5;Bend5;Bend5;Bend5,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,16,78933,ENSMUSG00000061298,mapped to different genes,4,111448510,111448618,109,*,109,9,0.52293578,1.208128079,0.082568807,0.0000019,CpGisland,TRUE,NA,NRS
16876,cg11166718,0.00000875,0.00000309,2.830992851,0.004943626,gain,ns,-0.00000252,0.00000525,-0.479888758,0.631644908,neg,ns,0.0000104,0.001537565,0.006774539,0.994599099,pos,ns,0.002351938,0.0000206,0.0000529,0.389193903,0.69739992,pos,ns,0.944028298,Diaph3,Diaph3_Exon,14,86866566,86866615,86866614,86866615,50,+,TTGTTCACCTGCTCTTCAAACTGAAGCTTAAAGAGAATAGCACTGAGCCG,"Exon (Diaph3-201/Diaph3, exon 21 of 28)",14,86655367,87141224,485858,2,Diaph3-201,274609,Diaph3-201;Diaph3-202;Diaph3-208;Diaph3-205,Diaph3;Diaph3;Diaph3;Diaph3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,11,56419,ENSMUSG00000022021,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11076,cg23281380,0.0000312,0.0000396,0.78923494,0.430577907,gain,ns,0.0000323,0.0000672,0.47987171,0.631657017,pos,ns,-0.013948781,0.019700591,-0.708038702,0.479453234,neg,ns,0.319253748,0.00071304,0.000677502,1.052455082,0.293410472,pos,ns,0.615072156,Nkx2-1,Nkx2-1_Intron,12,56524972,56525021,56524972,56524973,50,+,CGGCTCTTATGATTGCAAATGGCCCTGTTTTCAAATGGAAATAAGACTTG,"Intron (Sfta3-ps-201/Sfta3-ps-201, intron 1 of 6)",12,56531958,56535106,3149,2,Nkx2-1-202,10085,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,29,21869,ENSMUSG00000001496,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
24302,cg00310182,0.00000658,0.00000277,2.377583678,0.018032728,gain,ns,0.00000226,0.0000047,0.479862557,0.631663519,pos,ns,0.003807581,0.001377987,2.763147018,0.006066827,pos,ns,2.217038394,-0.0000873,0.0000474,-1.843016659,0.066281149,neg,ns,0.04372769,Pou3f1,Pou3f1_Intron,4,124575465,124575514,124575465,124575466,50,+,CGCGAGTTTATGGATCTTGATTGCACCCAGCAGGGAATCCTTTTTAGTGA,"Intron (Gm2164-201/Gm2164-201, intron 1 of 1)",4,124656807,124660655,3849,1,Pou3f1-201,-81293,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,43,85,18991,ENSMUSG00000090125,mapped to different genes,4,124575150,124575468,319,*,319,28,0.648902821,0.833831217,0.087774295,5.62E-20,CpGisland,TRUE,NA,NRS
1182,cg27593398,0.0000643,0.0000117,5.492144469,8.28E-08,gain,yes,0.00000954,0.0000199,0.479804344,0.631704868,pos,ns,0.024193496,0.005823728,4.154297368,0.0000422,pos,ns,4.374271419,-0.000889822,0.000200278,-4.44294764,0.0000124,neg,ns,0.112888203,Gm14512,Gm14512_Intergenic_downstream,X,11999184,11999233,11999184,11999185,50,+,CGGTCACAGGGGCAATTACACTCCTCGCTGCAGACGGTTACCAGCTCGCC,Distal Intergenic,20,11984468,11984697,230,1,Gm14512-201,14716,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,22,22,,NA,mapped to different genes,X,11998943,11999768,826,*,826,64,0.644067797,0.75275891,0.07748184,2.38E-41,CpGisland,TRUE,NA,NRS
13763,cg09877681,-0.00000686,0.00000297,-2.311200977,0.021477461,loss,ns,0.00000242,0.00000504,0.479681684,0.631792,pos,ns,0.000373136,0.001477863,0.252483277,0.800834865,pos,ns,0.096457028,0.0000547,0.0000508,1.076929759,0.282348996,pos,ns,0.927483568,Map3k20,Map3k20_Intron,2,72426940,72426989,72426988,72426989,50,+,CCTTGTTTTTACAAACTGGAAGGTTTAGCACTAAATAAAACAAACTGGCG,"Intron (Map3k20-201/Map3k20, intron 16 of 19)",2,72285637,72442610,156974,1,Map3k20-201,141303,Map3k20-201,Map3k20,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,14,18,65964,ENSMUSG00000004085,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19287,cg14374207,-0.000000855,0.000000916,-0.934074597,0.350992402,loss,ns,0.000000746,0.00000156,0.479634444,0.631825557,pos,ns,-0.000740997,0.000455757,-1.625858883,0.104995792,neg,ns,0.978828108,0.0000078,0.0000157,0.497871089,0.618927898,pos,ns,0.982314191,Foxp1,Foxp1_threeUTR,6,98941043,98941092,98941043,98941044,50,-,CGGCCTCGTTGAATATGGCGGCCACGTTTAAACTCTTCATCATCAACTGT,3' UTR,6,98925338,99266515,341178,2,Foxp1-206,325423,Foxp1-206;Foxp1-204;Foxp1-220;Foxp1-230;Foxp1-225;Foxp1-201;Foxp1-205;Foxp1-207;Foxp1-208;Foxp1-226;Foxp1-228;Foxp1-221;Foxp1-222;Foxp1-210,Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,9,87,108655,ENSMUSG00000030067,mapped to different genes,6,98940999,98941068,70,*,70,8,0.6,1.281464531,0.114285714,0.000000774,CpGisland,TRUE,U10,Tr-S
4568,cg24696041,-0.00000374,0.00000103,-3.615308856,0.000349996,loss,ns,0.000000842,0.00000176,0.479619494,0.631836178,pos,ns,-0.00052235,0.000514444,-1.015366996,0.310722725,neg,ns,0.507626983,0.00000368,0.0000177,0.207942938,0.835410067,pos,ns,0.039961769,Ranbp6,Ranbp6_Exon,19,29812724,29812773,29812724,29812725,50,+,CGTCGTAGCAGTGCGGCAGCCATTTGTCTCACCTCATAACCTGCTCTTCT,Promoter (<=1kb),19,29808400,29812974,4575,2,Ranbp6-201,201,Ranbp6-201;Ranbp6-202,Ranbp6;Ranbp6,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,240614,ENSMUSG00000074909,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12950,cg13178126,-0.00000127,0.00000163,-0.778442777,0.436901787,loss,ns,0.00000133,0.00000276,0.479606181,0.631845635,pos,ns,0.000853363,0.000809559,1.054108643,0.292654056,pos,ns,0.533645453,-0.0000601,0.0000278,-2.157258409,0.031753742,neg,ns,0.951535439,Fmr1,Fmr1_Exon,X,68710751,68710800,68710751,68710752,50,-,CGGCAGACGCGGTCCTGGATATACTTCAGGTACAAACTAAGCATTTTACT,"Exon (Fmr1-201/Fmr1, exon 14 of 17)",20,68678541,68717963,39423,1,Fmr1-201,32210,Fmr1-201;Fmr1-212;Fmr1-213;Fmr1-205;Fmr1-203;Fmr1-204;Fmr1-206;Fmr1-202;Fmr1-211;Fmr1-208,Fmr1;Fmr1;Fmr1;Fmr1;Fmr1;Fmr1;Fmr1;Fmr1;Fmr1;Fmr1,0;32169;32169;0;0;0;0;0;15953;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,8,14265,ENSMUSG00000000838,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17691,cg24396557,0.0000179,0.00000357,5.006401635,0.000000932,gain,yes,-0.00000291,0.00000607,-0.479604349,0.631846937,neg,ns,0.002694076,0.001777997,1.515230915,0.130732887,pos,ns,0.88361515,0.00000776,0.0000611,0.126871141,0.899124639,pos,ns,0.054577095,Zic4,Zic4_threeUTR,9,91386797,91386846,91386845,91386846,50,+,ACGCGGACTAAATCATTTTCATTTAATTTCCGGTAAACAAAACCCACGCG,3' UTR,9,91368970,91387793,18824,1,Zic4-204,17827,Zic4-204;Zic4-209;Zic4-205;Zic4-201;Zic4-202,Zic4;Zic4;Zic4;Zic4;Zic4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,18,55,22774,ENSMUSG00000036972,conserved gene and region,9,91386798,91386995,198,*,198,14,0.454545455,1.386,0.070707071,6.05E-09,CpGisland,TRUE,U13,Hc-P
7365,cg11000391,0.0000728,0.0000113,6.421343497,5.07E-10,gain,yes,-0.00000924,0.0000193,-0.479582919,0.63186216,neg,ns,0.0054561,0.005642435,0.966976111,0.334309749,pos,ns,0.475850959,-0.00000121,0.000194043,-0.006240848,0.99502457,neg,ns,0.132088104,Pou4f3,Pou4f3_fiveUTR,18,42395127,42395176,42395175,42395176,50,+,TATTTGGAAGCTTTGATGAGAGCCTGCTGGCACGCGCCGAAGCTCTGGCG,Promoter (<=1kb),18,42394539,42397249,2711,1,Pou4f3-201,588,Pou4f3-201;Pou4f3-202,Pou4f3;Pou4f3,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,7,17,18998,ENSMUSG00000024497,conserved gene but different region,18,42395159,42395444,286,*,286,29,0.65034965,0.992105263,0.101398601,1.45E-22,CpGisland,TRUE,U13,Hc-P
2800,cg22468573,-0.00000679,0.00000364,-1.865515399,0.063053642,loss,ns,0.00000297,0.00000618,0.479440325,0.631963463,pos,ns,0.001112398,0.001811822,0.61396657,0.539687701,pos,ns,0.267857479,-0.0000953,0.0000623,-1.528768584,0.127341529,neg,ns,0.935447804,Slc26a5,Slc26a5_Exon,5,21834315,21834364,21834315,21834316,50,+,CGCCTAGGGAACACACGTTGAGGTTTTTAACATTCTGCAACACAGCAACT,"Exon (Slc26a5-202/Slc26a5, exon 6 of 18)",5,21810655,21861998,51344,2,Slc26a5-202,27634,Slc26a5-202;Slc26a5-201;Slc26a5-204;Slc26a5-203,Slc26a5;Slc26a5;Slc26a5;Slc26a5,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,80979,ENSMUSG00000029015,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15737,cg15850484,0.000029,0.0000189,1.533018591,0.126291153,gain,ns,-0.0000154,0.0000321,-0.479440268,0.631963503,neg,ns,0.018346884,0.009416941,1.948284882,0.052283033,pos,ns,1.281639227,-0.000564203,0.000323848,-1.742185698,0.082467715,neg,ns,0.675129211,Gm4601,Gm4601_Intron,17,83050925,83050974,83050973,83050974,50,-,GGATTGCGTCAATTGAGGAAAATTTGTCTCCAGTGTAAACAAGCGGAACG,"Intron (Gm19689-201/Gm19689-201, intron 2 of 3)",17,82955996,82956965,970,1,Gm4601-201,94978,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,100043711,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22357,cg23480112,0.000000612,0.00000128,0.47881355,0.632408822,gain,ns,-0.00000104,0.00000217,-0.479397025,0.631994226,neg,ns,0.000990064,0.000635945,1.55683866,0.120529082,pos,ns,0.918908151,-0.0000893,0.0000219,-4.081605729,0.000057,neg,ns,0.96003858,Far1,Far1_Exon,7,113551262,113551311,113551262,113551263,50,+,CGTGCCTCCAACAATGCCCTTGCAGATCTTGTTCCTGTAGATGTAGTTGT,"Exon (Far1-201/Far1, exon 8 of 13)",7,113513834,113571511,57678,1,Far1-201,37428,Far1-201;Far1-206;Far1-205;Far1-202;Far1-211;Far1-207;Far1-204,Far1;Far1;Far1;Far1;Far1;Far1;Far1,0;37401;37401;0;0;37385;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,67420,ENSMUSG00000030759,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25019,cg26474314,0.00000173,0.00000171,1.008197411,0.314145985,gain,ns,-0.0000014,0.00000291,-0.479390852,0.631998611,neg,ns,-0.001706416,0.000852594,-2.001439674,0.046216299,neg,ns,1.335204832,0.0000551,0.0000293,1.87947417,0.061117633,pos,ns,0.035652108,Fgfr2,Fgfr2_Intron,7,131550589,131550638,131550637,131550638,50,+,AAAGAACGAACAGCAGAGGCCCTTGAACGAAAATCGAAACATAATCAACG,"Intron (Hmx2-202/Hmx2, intron 1 of 2)",7,130162451,133123350,2960900,2,Fgfr2-217,1572712,Fgfr2-217;Hmx2-202;Hmx2-201,Fgfr2;Hmx2;Hmx2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,58,79,14183,ENSMUSG00000030849,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
5541,cg09747157,-0.00000145,0.00000297,-0.48836321,0.625637861,loss,ns,-0.00000242,0.00000505,-0.479373427,0.632010991,neg,ns,-0.001587315,0.001478464,-1.073624972,0.283825796,neg,ns,0.546948136,0.0000301,0.0000508,0.592035514,0.55425834,pos,ns,0.92354858,Pbx3,Pbx3_Exon,2,34224483,34224532,34224531,34224532,50,-,AGAGTTATCTGAAGAACCTCCAGAGGCTGCCGCGGCTGCAGCTGCTGCCG,"Exon (Pbx3-202/Pbx3, exon 3 of 8)",2,34171457,34372038,200582,2,Pbx3-202,147506,Pbx3-202;Pbx3-201;Pbx3-210;Pbx3-206;Pbx3-207;Pbx3-209;Pbx3-204;Pbx3-205;Pbx3-203,Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,82,18516,ENSMUSG00000038718,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17775,cg11797492,-0.00000179,0.000000633,-2.830575411,0.004949917,loss,ns,-0.000000516,0.00000108,-0.479340669,0.632034265,neg,ns,-0.00067502,0.000315228,-2.141374601,0.033023217,neg,ns,1.481180618,0.00000462,0.0000108,0.426151977,0.670292852,pos,ns,0.991042939,Son,Son_threeUTR,16,91662547,91662596,91662595,91662596,50,+,TTGAGTGAGCAACACGCAGAAGCTCGCCTACAGTTTCGTTTCCATTCACG,3' UTR,16,91647506,91679207,31702,1,Son-203,15041,Son-203;Son-204;Son-202;Son-208;Son-201;Son-205;Son-212;Son-207,Son;Son;Son;Son;Son;Son;Son;Son,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,14,31,20658,ENSMUSG00000022961,conserved gene and region,16,91662523,91662634,112,*,112,9,0.508928571,1.26,0.080357143,0.00000238,CpGisland,TRUE,U10,Tr-S
23445,cg25560850,-0.00000098,0.00000495,-0.198005678,0.8431704,loss,ns,0.00000403,0.00000841,0.479339648,0.632034991,pos,ns,-0.003684761,0.00246349,-1.495748211,0.1357366,neg,ns,0.867303034,0.000145591,0.0000847,1.718507524,0.086702488,pos,ns,0.852974971,Eomes,Eomes_Exon,9,118484308,118484357,118484356,118484357,50,+,CCATCTCCCACGGATTCTCCTAGATCCCATCAGATTGTCCCTGGAGGTCG,"Exon (Eomes-202/Eomes, exon 6 of 6)",9,118478212,118485366,7155,1,Eomes-202,6096,Eomes-202;Eomes-201;Eomes-203,Eomes;Eomes;Eomes,0;0;5447,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,8,13813,ENSMUSG00000032446,conserved gene and region,9,118484282,118484551,270,*,270,14,0.555555556,0.704041721,0.051851852,0.000000295,CpGisland,TRUE,U13,Hc-P
15736,cg03112314,-0.0000712,0.0000695,-1.025592454,0.305883332,loss,ns,0.0000566,0.000118014,0.479331284,0.632040933,pos,ns,-0.059825487,0.034574232,-1.730348962,0.084563132,neg,ns,1.072818941,0.002831384,0.001189005,2.381305554,0.017854867,pos,ns,0.733928111,Gm4601,Gm4601_Intron,17,83050931,83050980,83050931,83050932,50,-,CGTCAATTGAGGAAAATTTGTCTCCAGTGTAAACAAGCGGAACGTCTTTG,"Intron (Gm19689-201/Gm19689-201, intron 2 of 3)",17,82955996,82956965,970,1,Gm4601-201,94984,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,100043711,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3181,cg04423201,-0.000000642,0.0000012,-0.534182498,0.593598139,loss,ns,0.000000978,0.00000204,0.479207729,0.63212872,pos,ns,0.000579955,0.000597842,0.970081183,0.332762292,pos,ns,0.477865893,-0.0000165,0.0000206,-0.801726958,0.423325034,neg,ns,0.027222928,Klf9,Klf9_Exon,19,23142057,23142106,23142057,23142058,50,+,CGAATCTGGGTCGAGTCCTTCCCACAGCCCGGAGGAGAGACAGGATCCTG,Promoter (<=1kb),19,23141226,23168134,26909,1,Klf9-201,831,Klf9-201;Klf9-202,Klf9;Klf9,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,13,16601,ENSMUSG00000033863,conserved gene and region,19,23141183,23142172,990,*,990,120,0.684848485,1.033789605,0.121212121,5.63E-102,CpGisland,TRUE,U1,Pr-A
22560,cg02907113,-0.0000482,0.0000127,-3.799300067,0.000174635,loss,ns,0.0000103,0.0000216,0.479034953,0.632251487,pos,ns,-0.017056854,0.006320702,-2.698569435,0.007345491,neg,ns,2.133979164,0.000136568,0.000217368,0.628278529,0.530284088,pos,ns,0.717913603,Rpl19-ps10,Rpl19-ps10_Intergenic_upstream,7,115132099,115132148,115132147,115132148,50,-,GAATAGGCGGGTAACAATGGTGACCAGCCTCCCTACAGTAATTGTGTACG,Distal Intergenic,7,115172056,115172385,330,1,Rpl19-ps10-201,-39957,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,29,668472,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7673,cg19696075,-0.0000244,0.00000434,-5.619488321,4.27E-08,loss,yes,0.00000353,0.00000737,0.47886205,0.632374355,pos,ns,-0.00335635,0.002159656,-1.554112966,0.121177761,neg,ns,0.916577077,0.0000594,0.0000743,0.800392637,0.424096297,pos,ns,0.940374523,Zbtb20,Zbtb20_threeUTR,16,43618888,43618937,43618888,43618889,50,+,CGTTTCATTTTGTACTACATGAAGAACTGTTTTTTGCCTGCTGGTACATT,3' UTR,16,42907652,43642602,734951,1,Zbtb20-204,711236,Zbtb20-204;Zbtb20-201;Zbtb20-203;Zbtb20-202;Zbtb20-205,Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,9,98,56490,ENSMUSG00000022708,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17738,cg19437366,-0.00000555,0.00000406,-1.366897918,0.172647737,loss,ns,0.0000033,0.0000069,0.478817764,0.632405827,pos,ns,0.003126506,0.002020922,1.547068792,0.122866893,pos,ns,0.910565124,-0.000143729,0.0000695,-2.068059149,0.039463638,neg,ns,0.91588285,Ckap5,Ckap5_Exon,2,91578135,91578184,91578183,91578184,50,-,AAATTTATCCAACCGAATATAGGTGAACTTCCAACTGCCTTGAAGGGTCG,"Exon (Ckap5-204/Ckap5, exon 22 of 44)",2,91526762,91620664,93903,1,Ckap5-204,51373,Ckap5-204;Ckap5-201;Ckap5-202;Ckap5-203,Ckap5;Ckap5;Ckap5;Ckap5,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,75786,ENSMUSG00000040549,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19806,cg03083106,-0.000016,0.00000379,-4.218607901,0.0000323,loss,ns,0.00000308,0.00000643,0.478640277,0.632531966,pos,ns,-0.002276508,0.00188387,-1.20842139,0.227806192,neg,ns,0.642434476,-0.0000768,0.0000648,-1.184740374,0.237027597,neg,ns,0.938413903,Cycs-ps2,Cycs-ps2_Intergenic_upstream,5,101172198,101172247,101172198,101172199,50,+,CGCCTTTTTGACAAGAGACAAATGTTTCATTCAAATGCTGCATTTCGCAT,Distal Intergenic,5,101305578,101305869,292,1,Cycs-ps2-201,-133331,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,10,13065,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24317,cg09168614,0.00000312,0.0000036,0.867241932,0.386480255,gain,ns,-0.00000293,0.00000612,-0.478475747,0.632648905,neg,ns,-0.004328575,0.001793356,-2.413673166,0.016372088,neg,ns,1.785895938,0.000116861,0.0000617,1.894836404,0.059044417,pos,ns,0.928794772,Pou3f1,Pou3f1_Intron,4,124621521,124621570,124621521,124621522,50,+,CGCTCACATTTTTGCAGCTCAGGAAGGCAGCTGACATACCAGCCCGGCTG,"Intron (Gm2164-201/Gm2164-201, intron 1 of 1)",4,124656807,124660655,3849,1,Pou3f1-201,-35237,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,43,85,18991,ENSMUSG00000090125,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12223,cg16203357,-0.00000196,0.00000175,-1.121213824,0.263064635,loss,ns,0.00000142,0.00000297,0.478420702,0.632688031,pos,ns,0.000747349,0.000871056,0.857979991,0.391566365,pos,ns,0.407194621,0.00000511,0.00003,0.170504822,0.864724369,pos,ns,0.959169672,Iqch,Iqch_Intron,9,63523701,63523750,63523749,63523750,50,-,ACATAATGACTTTATTTGCTTAATCCCCAAATTAAACGCCGTTTCAAGCG,"Intron (Gm16759-201/Gm16759-201, intron 3 of 4)",9,63421455,63602493,181039,2,Iqch-201,78743,Iqch-201;Iqch-203;Iqch-204;Iqch-202;Iqch-206,Iqch;Iqch;Iqch;Iqch;Iqch,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,22,78250,ENSMUSG00000037801,mapped to different genes,9,63523737,63523798,62,*,62,7,0.548387097,1.522807018,0.112903226,0.00000583,CpGisland,TRUE,NA,NRS
7421,cg02932095,0.0000288,0.00000284,10.15809901,4.09E-21,gain,yes,0.00000231,0.00000482,0.47841621,0.632691224,pos,ns,0.003184434,0.001411721,2.255711534,0.024785581,pos,ns,1.605800888,0.0000398,0.0000485,0.819372195,0.413203579,pos,ns,0.067431,Ostm1,Ostm1_Intron,10,42591726,42591775,42591774,42591775,50,-,TGACAAATCTATCTATTTGGGGCAAATTGTCAGTGAGAAACTTCCGCTCG,"Intron (Ostm1-202/Ostm1, intron 2 of 5)",10,42583835,42698323,114489,1,Ostm1-202,7891,Ostm1-202;Ostm1-203,Ostm1;Ostm1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,21,22,14628,ENSMUSG00000038280,mapped to different genes,10,42591770,42591966,197,*,197,30,0.730964467,1.140926641,0.152284264,2.64E-29,CpGisland,TRUE,U3,Pr-B
20520,cg20959809,-0.00000952,0.00000625,-1.523116131,0.128749082,loss,ns,-0.00000508,0.0000106,-0.478412943,0.632693546,neg,ns,-0.003007045,0.003109285,-0.967117674,0.334239097,neg,ns,0.475942751,-0.0000223,0.000106928,-0.208733528,0.83479335,neg,ns,0.899235703,Mycbp2,Mycbp2_threeUTR,14,103264269,103264318,103264317,103264318,50,+,GTCCTTTAACATACAAGAATTAACTGCTGGACCCAGAGGCTGAAGGCACG,3' UTR,14,103113411,103346418,233008,2,Mycbp2-202,82100,Mycbp2-202;Mycbp2-201;Mycbp2-209;Mycbp2-208,Mycbp2;Mycbp2;Mycbp2;Mycbp2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,6,105689,ENSMUSG00000033004,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13625,cg00587168,0.000131314,0.0000141,9.328144326,2.12E-18,gain,yes,-0.0000114,0.0000239,-0.478326602,0.632754918,neg,ns,0.003459305,0.00700637,0.493737036,0.621841533,pos,ns,0.206320275,0.00020801,0.000240948,0.863298113,0.388640995,pos,ns,0.496577863,Dlx1,Dlx1_Intergenic_downstream,2,71538050,71538099,71538098,71538099,50,+,AAAAATTTTAAAGCAGCAGCAGTTACCATGCAATTCAGGCTAATTCTGCG,Distal Intergenic,2,71530780,71532689,1910,1,Dlx1-206,7270,Dlx1-201;Dlx1-203,Dlx1;Dlx1,0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,36,13390,ENSMUSG00000041911,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
24403,cg21715608,-0.00000984,0.0000087,-1.131107817,0.258883996,loss,ns,0.00000707,0.0000148,0.478308422,0.632767841,pos,ns,0.006512992,0.004327776,1.504928251,0.133360691,pos,ns,0.874972162,-0.000276114,0.000148832,-1.855210731,0.064515301,neg,ns,0.726757422,Zc3h12a,Zc3h12a_Intergenic_upstream,4,125248794,125248843,125248842,125248843,50,-,GAATGACAAATGATTAATCTATAGAAATCTATATTCTATTCTTCCATGCG,Distal Intergenic,4,125118423,125127840,9418,2,Zc3h12a-201,-121003,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,5,230738,ENSMUSG00000042677,mapped to different genes,4,125248842,125248929,88,*,88,8,0.636363636,0.977777778,0.090909091,0.00000452,CpGisland,TRUE,NA,NRS
18475,cg01441716,-0.0000292,0.00000472,-6.178276472,2.04E-09,loss,yes,0.00000383,0.00000802,0.478162615,0.63287149,pos,ns,0.012613743,0.002348698,5.370524952,0.000000154,pos,ns,6.811581451,-0.000321811,0.0000808,-3.984216088,0.0000844,neg,ns,0.920526497,Zc3h12b,Zc3h12b_threeUTR,X,95926518,95926567,95926566,95926567,50,+,AGAGAGTCTTACCCCAAGGCATTATTTTTCAGGCAAAAAATGCACCTACG,3' UTR,20,95899033,95928230,29198,1,Zc3h12b-201,27485,Zc3h12b-204;Zc3h12b-201;Zc3h12b-203;Zc3h12b-202,Zc3h12b;Zc3h12b;Zc3h12b;Zc3h12b,214840;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,3,547176,ENSMUSG00000035045,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9699,cg01070983,0.0000159,0.00000296,5.367780837,0.000000157,gain,yes,-0.00000241,0.00000504,-0.478099188,0.63291658,neg,ns,0.002655635,0.001475257,1.800116955,0.072814259,pos,ns,1.137783564,-0.000101704,0.0000507,-2.004659048,0.045868828,neg,ns,0.054807809,Gm7481,Gm7481_Exon,12,50120477,50120526,50120477,50120478,50,-,CGTTTTTTTGTCTCTGATGGTTAATAAGCTTTGAGCCTAGTAGTCAAATG,"Exon (Gm40418-201/Gm40418-201, exon 1 of 3)",12,49840757,49841751,995,2,Gm7481-201,-278775,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,37,665077,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25507,cg04084157,0.0000099,0.00000178,5.57040266,5.52E-08,gain,yes,-0.00000144,0.00000302,-0.478065096,0.632940816,neg,ns,0.001982126,0.000884212,2.241685032,0.025688946,pos,ns,1.590253721,-0.000114879,0.0000304,-3.777919901,0.000189598,neg,ns,0.066542896,Vgf,Vgf_Intron,5,137030036,137030085,137030084,137030085,50,-,AGCATTTCATTCATTCATTCATTCATTCATTTCCCGGAGCTCCGCTAGCG,"Intron (Vgf-204/Vgf, intron 3 of 4)",5,137026392,137033351,6960,1,Vgf-204,3644,Ap1s1-201;Vgf-204;Vgf-201;Vgf-202;Vgf-203,Ap1s1;Vgf;Vgf;Vgf;Vgf,16050;0;-210;-279;-616,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,381677,ENSMUSG00000037428,conserved gene but different region,5,137029992,137030508,517,*,517,45,0.632495164,0.930227909,0.087040619,1.35E-31,CpGisland,TRUE,U3,Pr-B
2314,cg26329250,-0.0000144,0.00000706,-2.03977995,0.04221971,loss,ns,-0.00000573,0.000012,-0.478037285,0.632960588,neg,ns,0.003693674,0.003513629,1.051241911,0.29396627,pos,ns,0.531702498,0.0000277,0.000120833,0.228854845,0.819132639,pos,ns,0.893095107,Meis1,Meis1_Exon,11,19011309,19011358,19011357,19011358,50,+,TCTATCACCAAATCGATAGGCATTTTCCCTTTCAAACAGCTAATATACCG,"Exon (Meis1-206/Meis1, exon 6 of 10)",11,18879817,19018985,139169,2,Meis1-206,7627,Meis1-206;Meis1-202;Meis1-209;Meis1-201;Meis1-203;Meis1-208;Meis1-207;Meis1-204;Meis1-205,Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,21,88,17268,ENSMUSG00000020160,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10220,cg08479590,0.0000314,0.00000381,8.244967916,4.74E-15,gain,yes,-0.00000309,0.00000647,-0.477950908,0.633021997,neg,ns,0.004281832,0.001895722,2.25868206,0.024597855,pos,ns,1.609102763,-0.0000757,0.0000652,-1.160644825,0.246679375,neg,ns,0.097553203,Hoxa11,Hoxa11_fiveUTR,6,52245748,52245797,52245748,52245749,50,+,CGAGCTTAACATGATTCTCCACTGCAGCTGCCTCTTTGAAGCGGATCCGT,Promoter (<=1kb),6,52242110,52245795,3686,2,Hoxa11-202,0,Hoxa10-201;Hoxa10-204;Hoxa11-201;Hoxa11-202,Hoxa10;Hoxa10;Hoxa11;Hoxa11,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,18,15396,ENSMUSG00000038210,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
9243,cg22379728,-0.0000233,0.00000824,-2.824237611,0.005046318,loss,ns,-0.00000669,0.000014,-0.477939487,0.633030117,neg,ns,0.001514829,0.004100207,0.369451921,0.71204314,pos,ns,0.147493693,-0.000173262,0.000141006,-1.228760757,0.220093478,neg,ns,0.814745598,Cadm1,Cadm1_Exon,9,47836696,47836745,47836696,47836697,50,+,CGATTTGTTTTTACTTGTAAGGCCTTACTCAGTTGCCCAATTCCGCAGAA,"Exon (Cadm1-209/Cadm1, exon 10 of 12)",9,47530173,47853385,323213,1,Cadm1-204,306523,Cadm1-204;Cadm1-209;Cadm1-206;Cadm1-202;Cadm1-203;Cadm1-211;Cadm1-201,Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,13,77,54725,ENSMUSG00000032076,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12418,cg18206459,-0.000000698,0.000000624,-1.118519037,0.264211369,loss,ns,-0.000000507,0.00000106,-0.477859817,0.63308676,neg,ns,0.000075,0.000310712,0.241412341,0.809395151,pos,ns,0.091839402,-0.0000259,0.0000107,-2.424641321,0.015894884,neg,ns,0.018611211,Klf7,Klf7_fiveUTR,1,64121427,64121476,64121475,64121476,50,+,CTAATGCAATCTTTGCTCTTTATTTTGGGAGGTTGCATTTTTTTCTCTCG,Promoter (<=1kb),1,64029447,64121491,92045,2,Klf7-202,15,Klf7-202;Klf7-201;Klf7-203,Klf7;Klf7;Klf7,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,6,21,93691,ENSMUSG00000025959,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
14206,cg23147149,0.0000245,0.00000697,3.511409519,0.000511935,gain,ns,0.00000565,0.0000118,0.477757096,0.633159795,pos,ns,0.002282211,0.003467511,0.65816992,0.510917423,pos,ns,0.291649287,0.0000766,0.000119247,0.642750235,0.520861276,pos,ns,0.134919759,Mnt,Mnt_fiveUTR,11,74830961,74831010,74831009,74831010,50,-,GTGTGTGTCGGTGCCTCCTCGCCATCTTGTTGCAAAGCCCTTTCTTGTCG,Promoter (<=1kb),11,74830920,74845725,14806,1,Mnt-201,41,Mettl16-205;Mnt-201,Mettl16;Mnt,60131;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,17,17428,ENSMUSG00000000282,conserved gene and region,11,74830803,74831045,243,*,243,33,0.761316872,0.951923077,0.135802469,2.89E-30,CpGisland,TRUE,U1,Pr-A
19648,cg27459403,-0.00000704,0.00000503,-1.400921134,0.162237879,loss,ns,-0.00000408,0.00000854,-0.477657293,0.633230759,neg,ns,-0.001133525,0.002502623,-0.452934639,0.650912646,neg,ns,0.186477291,0.0000893,0.0000861,1.038080023,0.300041812,pos,ns,0.898517412,Gm28267,Gm28267_Intergenic_upstream,9,100271904,100271953,100271904,100271905,50,-,CGCATAATGGGCCAGCAACTGTAGCTGGGTGATTGAAATGAAATTACCAT,Distal Intergenic,9,100404495,100404759,265,1,Gm28267-201,-132591,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,29,29,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18870,cg14224422,-0.000012,0.00000375,-3.202517286,0.001503849,loss,ns,-0.00000304,0.00000636,-0.47760905,0.633265063,neg,ns,0.002018242,0.001864573,1.082414974,0.279909408,pos,ns,0.552982504,-0.0000483,0.0000641,-0.753808541,0.451536355,neg,ns,0.952552638,Nfia,Nfia_Exon,4,97783316,97783365,97783316,97783317,50,+,CGAGAGGATTTTGTTCTTACAGTTACAGGGAAAAAACCTCCATGTTGTGT,"Exon (Nfia-208/Nfia, exon 2 of 4)",4,97772734,98000466,227733,1,Nfia-208,10582,Nfia-208;Nfia-202;Nfia-203;Nfia-205;Nfia-201;Nfia-204,Nfia;Nfia;Nfia;Nfia;Nfia;Nfia,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,44,18027,ENSMUSG00000028565,conserved gene but different region,4,97783124,97783317,194,*,194,15,0.541237113,1.060495627,0.077319588,4.21E-10,CpGisland,TRUE,U10,Tr-S
25970,cg22198893,-0.00000855,0.00000381,-2.245686785,0.025428344,loss,ns,0.00000309,0.00000647,0.47752234,0.633326721,pos,ns,-0.002268079,0.001895777,-1.196385119,0.232460517,neg,ns,0.633650801,0.000054,0.0000652,0.828165287,0.408214019,pos,ns,0.902202395,Pdlim5,Pdlim5_Exon,3,142303347,142303396,142303347,142303348,50,+,CGTGCTGAAACTTCATGGTGCCAGTCACGTAATTTTGTGTATTTGGGACT,"Exon (Pdlim5-205/Pdlim5, exon 9 of 9)",3,142239590,142395693,156104,2,Pdlim5-201,92297,Pdlim5-201;Pdlim5-206;Pdlim5-208;Pdlim5-212;Pdlim5-211;Pdlim5-213;Pdlim5-210;Pdlim5-205;Pdlim5-203;Pdlim5-204;Pdlim5-209;Pdlim5-202,Pdlim5;Pdlim5;Pdlim5;Pdlim5;Pdlim5;Pdlim5;Pdlim5;Pdlim5;Pdlim5;Pdlim5;Pdlim5;Pdlim5,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,6,56376,ENSMUSG00000028273,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4410,cg10276853,-0.00000602,0.00000425,-1.417813833,0.157249496,loss,ns,-0.00000345,0.00000722,-0.477460156,0.633370941,neg,ns,-0.004204133,0.002114733,-1.988020321,0.047688754,neg,ns,1.321584021,0.0000883,0.0000727,1.214067335,0.225646094,pos,ns,0.900342101,Brpf3,Brpf3_threeUTR,17,28817618,28817667,28817666,28817667,50,+,AAGTATAATGCTAAAGACACAATTTTCCACCGAGCAGCTGTCCGCCTGCG,3' UTR,17,28801090,28839949,38860,1,Brpf3-201,16528,Brpf3-201;Brpf3-216;Brpf3-217;Brpf3-219;Brpf3-210;Brpf3-218;Brpf3-212;Brpf3-202;Brpf3-209;Brpf3-208;Brpf3-211;Brpf3-207,Brpf3;Brpf3;Brpf3;Brpf3;Brpf3;Brpf3;Brpf3;Brpf3;Brpf3;Brpf3;Brpf3;Brpf3,0;0;0;0;0;0;0;7959;0;0;-669;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,7,7,268936,ENSMUSG00000063952,conserved gene and region,17,28817648,28817781,134,*,134,10,0.649253731,0.708245243,0.074626866,0.00000101,CpGisland,TRUE,U10,Tr-S
16767,cg17870558,0.0000683,0.0000153,4.455574794,0.0000117,gain,ns,-0.0000124,0.000026,-0.477428966,0.633393122,neg,ns,0.023491109,0.007628893,3.079229109,0.002261068,pos,ns,2.645686332,-0.000497365,0.000262357,-1.895758057,0.058921923,neg,ns,0.255193946,Gm49157,Gm49157_Intergenic_downstream,14,86489606,86489655,86489654,86489655,50,+,TTCCCAAGATGACCTGAAATGTTCTAATTATTGGTTATTCCCTCTGGTCG,Distal Intergenic,14,86503446,86503575,130,2,Gm49157-201,13920,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11384,cg18316193,-0.0000195,0.00000803,-2.426526247,0.015814124,loss,ns,-0.00000651,0.0000136,-0.477279609,0.633499339,neg,ns,0.00065784,0.003997485,0.164563358,0.869394923,pos,ns,0.0607829,-0.000226804,0.000137473,-1.649806012,0.099995457,neg,ns,0.826613636,Galnt5,Galnt5_Intergenic_upstream,2,57895646,57895695,57895646,57895647,50,-,CGAGATTGTGATCTTTAAGTGGAACTGTACAAACAACCACGAAGTCCTAA,Distal Intergenic,2,57997884,58045860,47977,1,Galnt5-203,-102238,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,8,241391,ENSMUSG00000026828,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25356,cg22553610,0.0000511,0.0000139,3.683847643,0.00027102,gain,ns,-0.0000112,0.0000236,-0.47712654,0.633608203,neg,ns,0.027980497,0.006907626,4.050667788,0.0000646,pos,ns,4.189763336,-0.000740943,0.000237553,-3.119067413,0.00198468,neg,ns,0.35363985,Myom3,Myom3_Exon,4,135788356,135788405,135788356,135788357,50,-,CGAGCTGTCGGCACCCAGCAGCCTGTTTGAGTGCAAAGAGTGGACAATGC,"Exon (Myom3-201/Myom3, exon 19 of 37)",4,135759715,135815564,55850,1,Myom3-201,28641,Myom3-201,Myom3,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,242702,ENSMUSG00000037139,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24100,cg24453866,0.0000505,0.00000558,9.05096118,1.61E-17,gain,yes,0.00000452,0.00000948,0.47699927,0.633698725,pos,ns,0.016113094,0.002777238,5.801842014,1.62E-08,pos,ns,7.790783292,-0.000138707,0.0000955,-1.452292094,0.147431767,neg,ns,0.160572969,Gm9399,Gm9399_Intergenic_downstream,14,122489953,122490002,122490001,122490002,50,+,TCTCGCTTCCATTGAACAGTCTGTTGCTCAAACACAACAGCCAACAAACG,Distal Intergenic,14,122494613,122495251,639,2,Gm9399-201,5249,Gm9399-201,Gm9399,5249,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,3,668847,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
9854,cg03517402,0.00000778,0.00000496,1.566485834,0.118255102,gain,ns,-0.00000402,0.00000843,-0.476992572,0.63370349,neg,ns,0.003656029,0.002470762,1.479717206,0.139964225,pos,ns,0.853982957,-0.000132172,0.000085,-1.555524385,0.12084152,neg,ns,0.931575673,Gm5040,Gm5040_Intergenic_upstream,10,51153879,51153928,51153927,51153928,50,+,CACCAAAGAAGGCAATTCTGCAACTTCAAATGAGCCTAATTGGCTGAGCG,Distal Intergenic,10,51238829,51239628,800,1,Gm5040-201,-84901,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,11,268300,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6975,cg17808882,0.0000728,0.00000621,11.7250957,1.59E-26,gain,yes,-0.00000503,0.0000106,-0.476929487,0.633748361,neg,ns,0.005251881,0.003091562,1.69877905,0.090364121,pos,ns,1.044003973,-0.0000899,0.000106319,-0.845375058,0.398553471,neg,ns,0.140394625,Fgf20,Fgf20_Intron,8,40287046,40287095,40287094,40287095,50,-,TATATAAGCGGGTCCTCTTGACATATGCTAATCAAGTCCTTTCATGCGCG,"Intron (Fgf20-202/Fgf20, intron 1 of 2)",8,40279725,40308331,28607,2,Fgf20-202,21236,Fgf20-201;Fgf20-202,Fgf20;Fgf20,-93;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,80857,ENSMUSG00000031603,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
24600,cg25126456,0.00000782,0.00000204,3.834343015,0.000152496,gain,ns,0.00000165,0.00000347,0.476683677,0.633923218,pos,ns,0.00160974,0.001015598,1.585017623,0.113981868,pos,ns,0.943164231,-0.000004,0.0000349,-0.114611617,0.908827168,neg,ns,0.078019635,Ccnd2,Ccnd2_Promoter,6,127151820,127151869,127151820,127151821,50,+,CGGCCACGCAGGAAAAACCCGCTTCCTCGCCCCTGCATCTGCTGACAAGC,Promoter (<=1kb),6,127146023,127152193,6171,2,Ccnd2-206,324,Ccnd2-201;Ccnd2-206;Ccnd2-208;Ccnd2-202;Ccnd2-204;Ccnd2-205,Ccnd2;Ccnd2;Ccnd2;Ccnd2;Ccnd2;Ccnd2,-760;0;-813;-787;-813;-859,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,4,4,12444,ENSMUSG00000000184,mapped to different genes,6,127151741,127151929,189,*,189,17,0.666666667,0.812800405,0.08994709,1.73E-12,CpGisland,TRUE,U3,Pr-B
8596,cg20997773,0.000031,0.00000351,8.834093499,7.65E-17,gain,yes,-0.00000284,0.00000596,-0.476602045,0.633981291,neg,ns,0.005584737,0.001745592,3.199336451,0.001519999,pos,ns,2.81815667,-0.0000897,0.00006,-1.493721186,0.13626562,neg,ns,0.078409143,Dscaml1,Dscaml1_fiveUTR,9,45430419,45430468,45430419,45430420,50,-,CGGCCGGCCACAGGACCACCTCCCCGGAGAATAGGGCCTCTTTATGGCAT,5' UTR,9,45426628,45571224,144597,1,Dscaml1-208,3791,Dscaml1-208;Dscaml1-209;Dscaml1-202;Dscaml1-206;Dscaml1-211;Dscaml1-201;Dscaml1-210,Dscaml1;Dscaml1;Dscaml1;Dscaml1;Dscaml1;Dscaml1;Dscaml1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,32,114873,ENSMUSG00000032087,conserved gene and region,9,45430237,45430444,208,*,208,27,0.793269231,0.87394958,0.129807692,3.26E-24,CpGisland,TRUE,U13,Hc-P
24220,cg14684436,0.0000211,0.00000359,5.892539906,9.91E-09,gain,yes,-0.0000029,0.0000061,-0.476506199,0.634049479,neg,ns,0.006480161,0.001785908,3.62849724,0.000333291,pos,ns,3.477176663,-0.000258042,0.0000614,-4.201461868,0.0000347,neg,ns,0.051580749,Gm12902,Gm12902_Intergenic_downstream,4,123990932,123990981,123990932,123990933,50,+,CGGATCAGGCGCCGAGATGTTGCCTTGCTCTGAGTGACAGAAGTTAATAA,Distal Intergenic,4,123926234,123926555,322,1,Gm12902-201,64698,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,34,34,,NA,mapped to different genes,4,123990667,123990945,279,*,279,24,0.64516129,0.82830282,0.086021505,5.57E-17,CpGisland,TRUE,U3,Pr-B
8497,cg21523490,0.0000322,0.00000542,5.946467036,7.38E-09,gain,yes,0.00000439,0.00000921,0.47642184,0.634109497,pos,ns,0.004755174,0.002698826,1.761941989,0.079064684,pos,ns,1.102017462,0.0000227,0.0000928,0.244208831,0.807230636,pos,ns,0.101690318,Lbx1,Lbx1_Intergenic_downstream,19,45231291,45231340,45231291,45231292,50,-,CGCGCGGGGACCTAATCCATCAAATTGTCTACAAATTGTGAAGAAAATTC,Distal Intergenic,19,45232684,45235812,3129,2,Lbx1-201,4521,Lbx1-201,Lbx1,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,30,50,16814,ENSMUSG00000025216,mapped to different genes,19,45230944,45231296,353,*,353,46,0.776203966,0.880346978,0.130311615,4.39E-41,CpGisland,TRUE,NA,NRS
22585,cg10191511,-0.00000999,0.00000324,-3.083562136,0.002229375,loss,ns,0.00000262,0.00000551,0.476409447,0.634118315,pos,ns,0.00187247,0.001612954,1.160894998,0.246577764,pos,ns,0.608046091,-0.000125678,0.0000555,-2.265718639,0.0241581,neg,ns,0.929517288,Rpl19-ps10,Rpl19-ps10_Intergenic_downstream,7,115300503,115300552,115300503,115300504,50,+,CGATTTTGCCAACACTCAGCTGCTTTATCGGCTCTGATGAAACATTTGTG,Distal Intergenic,7,115172056,115172385,330,1,Rpl19-ps10-201,128447,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,29,668472,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15316,cg03649776,0.0000104,0.00000281,3.720119084,0.000236345,gain,ns,-0.00000227,0.00000477,-0.476350956,0.63415993,neg,ns,0.00162162,0.001396764,1.160983505,0.246541822,pos,ns,0.608109398,-0.0000413,0.000048,-0.859383828,0.390792846,neg,ns,0.079694481,Cacna1i,Cacna1i_fiveUTR,15,80287221,80287270,80287269,80287270,50,+,TTTCCCCGAAGACATTTGGTGTCAGTATAAGGACGGCTTTTCCTCGCACG,Promoter (<=1kb),15,80287238,80398279,111042,1,Cacna1i-202,0,Cacna1i-202;Cacna1i-205,Cacna1i;Cacna1i,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,11,239556,ENSMUSG00000022416,conserved gene but different region,15,80287087,80287795,709,*,709,110,0.784203103,1.042870133,0.155148096,1.38E-107,CpGisland,TRUE,NA,NRS
13383,cg10929616,0.00000731,0.00000981,0.745178562,0.456728369,gain,ns,-0.00000793,0.0000167,-0.476319079,0.634182611,neg,ns,-0.005193835,0.004880105,-1.064287541,0.288026746,neg,ns,0.540567181,0.00032527,0.000167826,1.938135111,0.053514474,pos,ns,0.600482348,Nr2f2,Nr2f2_Exon,7,70354700,70354749,70354748,70354749,50,+,AGTAACATATCCCGGATGAGGGTTTCGATGGGGGTTTTACCTACCAAACG,"Exon (Nr2f2-201/Nr2f2, exon 3 of 3)",7,70351944,70360593,8650,2,Nr2f2-201,5844,Nr2f2-201;Nr2f2-203;Nr2f2-202;Nr2f2-205;Nr2f2-204;Nr2f2-206,Nr2f2;Nr2f2;Nr2f2;Nr2f2;Nr2f2;Nr2f2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,24,69,11819,ENSMUSG00000030551,conserved gene and region,7,70354695,70354858,164,*,164,11,0.536585366,0.993939394,0.067073171,0.000000682,CpGisland,TRUE,NA,NRS
24939,cg12761282,0.0000473,0.00000813,5.818979938,1.48E-08,gain,yes,-0.00000658,0.0000138,-0.476230214,0.634245841,neg,ns,0.005472746,0.004047151,1.352246335,0.177282162,pos,ns,0.751334961,-0.000201323,0.000139181,-1.446479178,0.149053171,neg,ns,0.488680261,Tgm3,Tgm3_Promoter,2,130012266,130012315,130012266,130012267,50,+,CGCCCACTTCATTAGAATTCTAATTGGGGTGTGTAGGAGAGGATTCTATA,Promoter (<=1kb),2,130012349,130050399,38051,1,Tgm3-201,-34,Tgm3-201,Tgm3,-34,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,2,21818,ENSMUSG00000027401,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18222,cg13718663,-0.000000881,0.00000188,-0.46955694,0.639001698,loss,ns,0.00000152,0.00000319,0.47622491,0.634249615,pos,ns,0.001952741,0.000933752,2.091283973,0.037316363,pos,ns,1.428100688,-0.0000709,0.0000321,-2.207226527,0.028030624,neg,ns,0.956885434,Dipk2a,Dipk2a_Exon,9,94520484,94520533,94520484,94520485,50,-,CGCCAGGTGGCATGTCTGGATAAGAGGTTCTGACAAACAGCATAGTAATT,"Exon (Dipk2a-201/Dipk2a, exon 3 of 3)",9,94517864,94538081,20218,2,Dipk2a-201,17548,Dipk2a-201,Dipk2a,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,68861,ENSMUSG00000045414,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16244,cg11766397,-0.00000841,0.00000396,-2.121644181,0.034660708,loss,ns,-0.00000321,0.00000674,-0.476163995,0.634292959,neg,ns,-0.001561181,0.00197315,-0.791212556,0.429424897,neg,ns,0.36711278,0.0000463,0.0000679,0.681613196,0.495992463,pos,ns,0.917598722,Lhx1,Lhx1_Intergenic_upstream,11,84641449,84641498,84641449,84641450,50,-,CGCTTTTATAGATTTATCAGTCATTGCAGGCACAAAATGACAGGCAATGT,Distal Intergenic,11,84518284,84525535,7252,2,Lhx1-201,-115963,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,20,23,16869,ENSMUSG00000018698,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
6602,cg18533466,-0.00000235,0.00000106,-2.223777294,0.026883765,loss,ns,0.000000854,0.00000179,0.475936985,0.634454501,pos,ns,0.000568613,0.000525793,1.081438062,0.28034284,pos,ns,0.552310532,-0.00000436,0.0000181,-0.240960354,0.809745133,neg,ns,0.028231886,Rreb1,Rreb1_fiveUTR,13,37826003,37826052,37826003,37826004,50,+,CGTCCCCAGGAGACTCGCAGGAGCAACACGTGATGTGTCTACTTATCAGG,Promoter (<=1kb),13,37826038,37935545,109508,1,Rreb1-203,0,Rreb1-204;Rreb1-208;Rreb1-203;Rreb1-207;Rreb1-210;Rreb1-206;Rreb1-202,Rreb1;Rreb1;Rreb1;Rreb1;Rreb1;Rreb1;Rreb1,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,10,68750,ENSMUSG00000039087,conserved gene and region,13,37825874,37826159,286,*,286,27,0.678321678,0.853448276,0.094405594,3.69E-20,CpGisland,TRUE,U1,Pr-A
8547,cg14292251,-0.00000278,0.00000125,-2.229850809,0.026473241,loss,ns,-0.00000101,0.00000212,-0.475913582,0.634471156,neg,ns,0.000294072,0.000620333,0.474054616,0.635794675,pos,ns,0.196683114,-0.0000406,0.0000213,-1.903110338,0.057952326,neg,ns,0.021296505,Psmc6,Psmc6_fiveUTR,14,45329836,45329885,45329884,45329885,50,+,CGGCTTCTCATCATGGCGGACCCTAGAGATAAGGCGCTTCAGGACTACCG,Promoter (<=1kb),14,45329836,45340667,10832,1,Psmc6-204,0,Psmc6-201;Psmc6-207;Psmc6-204;Psmc6-206;Psmc6-202;Psmc6-208;Psmc6-209;Psmc6-210;Psmc6-205,Psmc6;Psmc6;Psmc6;Psmc6;Psmc6;Psmc6;Psmc6;Psmc6;Psmc6,0;0;0;0;0;0;-870;-4522;-4745,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,3,67089,ENSMUSG00000021832,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
26379,cg14536909,0.0000143,0.00000276,5.169019452,0.000000423,gain,yes,-0.00000223,0.0000047,-0.475894241,0.634484919,neg,ns,0.003340339,0.00137588,2.427783542,0.015760457,pos,ns,1.802431206,-0.0000765,0.0000473,-1.617268634,0.106837368,neg,ns,0.041692446,Gsx1,Gsx1_Promoter,5,147186545,147186594,147186545,147186546,50,+,CGAAGAGACTTGGTAAAAAGCCCACGGATTTTGCCCCAAAGTGTGACAGA,Promoter (2-3kb),5,147188696,147190947,2252,1,Gsx1-201,-2102,Gsx1-201,Gsx1,-2102,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,6,20,14842,ENSMUSG00000053129,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
5818,cg23160268,-0.0000177,0.00000532,-3.334430313,0.000958466,loss,ns,-0.0000043,0.00000903,-0.475883445,0.634492602,neg,ns,0.000463523,0.002645842,0.175189354,0.861045218,pos,ns,0.064974041,-0.0000322,0.000091,-0.353773111,0.723749409,neg,ns,0.899372989,Tnks,Tnks_Intron,8,34890687,34890736,34890735,34890736,50,+,CTTGTGAAGGCAGCATCACCAGTGCCTTGGAGACGGGCAGCAAATTGACG,"Intron (Tnks-201/Tnks, intron 3 of 26)",8,34826460,34965690,139231,2,Tnks-201,74954,Tnks-201;Tnks-203,Tnks;Tnks,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,6,21951,ENSMUSG00000031529,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22164,cg16108895,0.0000176,0.00000312,5.648002979,3.67E-08,gain,yes,-0.00000252,0.0000053,-0.475872147,0.634500643,neg,ns,0.001483969,0.001551585,0.956421526,0.339604568,pos,ns,0.469026477,0.00000505,0.0000534,0.094665808,0.924641436,pos,ns,0.927823252,Agbl4,Agbl4_Intron,4,111496675,111496724,111496675,111496676,50,+,CGTGAAGTCAAATTGAGGGGAATAATGGCAGTGTAAATAATGCATGGCCT,"Intron (Agbl4-205/Agbl4, intron 6 of 8)",4,110397698,111567010,1169313,1,Agbl4-205,1098977,Agbl4-205;Agbl4-206;Agbl4-201;Agbl4-202;Agbl4-209,Agbl4;Agbl4;Agbl4;Agbl4;Agbl4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,16,78933,ENSMUSG00000061298,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
797,cg02944016,-0.0000393,0.00000934,-4.208076937,0.0000338,loss,ns,-0.00000755,0.0000159,-0.475753634,0.634584987,neg,ns,-0.013906636,0.00464702,-2.992592293,0.002988472,neg,ns,2.524550797,0.000256469,0.000159811,1.604831698,0.109549067,pos,ns,0.727344487,Sash1,Sash1_Exon,10,8750653,8750702,8750701,8750702,50,-,AGACTTCTGGTGGATTCTCAAGAGAACCCTTTTAGTACAGCGGTCGACCG,"Exon (Sash1-203/Sash1, exon 2 of 4)",10,8722219,8886070,163852,2,Sash1-201,135368,Sash1-201;Sash1-203;Sash1-202,Sash1;Sash1;Sash1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,70097,ENSMUSG00000015305,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
477,cg20694228,-0.0000039,0.00000211,-1.84922806,0.065376727,loss,ns,0.0000017,0.00000358,0.475685604,0.634633405,pos,ns,0.000858293,0.00104976,0.81760901,0.414208433,pos,ns,0.382781064,0.0000165,0.0000361,0.456560093,0.648306989,pos,ns,0.934866916,Ogdh,Ogdh_Exon,11,6324856,6324905,6324904,6324905,50,-,GATACCCCACTCTGCCTCTCAGATCTTGCAGTTTTCAAGGAACGACTTCG,"Exon (Ogdh-203/Ogdh, exon 5 of 24)",11,6291633,6356642,65010,1,Ogdh-201,33223,Ogdh-201;Ogdh-204;Ogdh-203;Ogdh-202,Ogdh;Ogdh;Ogdh;Ogdh,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,18293,ENSMUSG00000020456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20501,cg04097289,-0.00000374,0.00000661,-0.565269919,0.572299048,loss,ns,0.00000534,0.0000112,0.475586312,0.634704076,pos,ns,-0.000679341,0.003289006,-0.206548874,0.836497786,neg,ns,0.077535204,0.000135253,0.000113109,1.195783093,0.232695083,pos,ns,0.693993113,Smug1,Smug1_Intron,15,103135787,103135836,103135835,103135836,50,-,AGCTATAAATAATGGCACAGATCATTAAACCCCGAGAGCAGGCCCAGCCG,"Intron (D930007P13Rik-201/D930007P13Rik-201, intron 3 of 6)",15,103153307,103158002,4696,2,Smug1-201,22215,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,12,71726,ENSMUSG00000036061,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
24500,cg11060413,0.0000154,0.00000391,3.939875811,0.000100772,gain,ns,-0.00000316,0.00000664,-0.475480963,0.634779061,neg,ns,0.001129409,0.001944273,0.58088995,0.561736688,pos,ns,0.25046721,-0.0000444,0.0000669,-0.664204257,0.507053309,neg,ns,0.057793472,Kcna1,Kcna1_fiveUTR,6,126644785,126644834,126644785,126644786,50,-,CGGTCCATTTCTGGGCGCTGCAAGATCAGCAGAAACCTGAGAAAGCGCCT,Promoter (<=1kb),6,126640397,126644796,4400,2,Kcna1-201,0,Kcna1-201;Kcna1-202;Kcna1-203,Kcna1;Kcna1;Kcna1,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,12,16485,ENSMUSG00000047976,conserved gene and region,6,126644089,126644899,811,*,811,68,0.638717633,0.822711541,0.083847102,2.88E-46,CpGisland,TRUE,U3,Pr-B
8775,cg00971828,0.0000255,0.00000884,2.88763998,0.004154415,gain,ns,0.00000714,0.000015,0.475454331,0.634798017,pos,ns,0.007570681,0.004400169,1.720543368,0.086331584,pos,ns,1.063830293,-0.000158676,0.000151321,-1.048600193,0.295178992,neg,ns,0.836006323,Fgf8,Fgf8_Intron,19,45737809,45737858,45737809,45737810,50,-,CGGCTTACTGAACATTCCAAATGCTGGTACCATGTAATTGGACATAATAG,"Intron (Fgf8-201/Fgf8, intron 5 of 5)",19,45736798,45742874,6077,2,Fgf8-201,5016,Fgf8-201;Fgf8-206;Fgf8-202;Fgf8-205;Fgf8-203;Fgf8-204,Fgf8;Fgf8;Fgf8;Fgf8;Fgf8;Fgf8,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,18,14179,ENSMUSG00000025219,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
23620,cg09936631,0.00000118,0.00000054,2.182562485,0.029818229,gain,ns,0.000000436,0.000000918,0.475428138,0.634816662,pos,ns,0.000394069,0.000268854,1.465736631,0.143733596,pos,ns,0.842441707,-0.0000158,0.00000925,-1.713012877,0.087709998,neg,ns,0.012839127,Dll4,Dll4_Intron,2,119327310,119327359,119327358,119327359,50,+,TTGCGTTTCCTGCGGGTTATTTTTGGCGTGGGAACGCGGGGAGTACGGCG,"Intron (Dll4-201/Dll4, intron 3 of 10)",2,119325784,119335962,10179,1,Dll4-201,1526,Dll4-201;Dll4-202,Dll4;Dll4,0;-1179,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,20,54485,ENSMUSG00000027314,conserved gene but different region,2,119327100,119327430,331,*,331,31,0.637462236,0.947985957,0.093655589,5.80E-23,CpGisland,TRUE,U3,Pr-B
23299,cg08676154,-0.00000572,0.00000154,-3.724545735,0.000232412,loss,ns,-0.00000124,0.00000261,-0.47541528,0.634825814,neg,ns,-0.001540762,0.000764159,-2.01628396,0.044632486,neg,ns,1.350348922,0.0000332,0.0000263,1.264072261,0.207153735,pos,ns,0.960660468,Eri3,Eri3_Intron,4,117664935,117664984,117664935,117664936,50,+,CGGATGGTTTTTCATTATAGCCTCTCAGGTCCTGCCCGCACCCTGTGTGG,"Intron (Eri3-201/Eri3, intron 8 of 8)",4,117550365,117674297,123933,1,Eri3-201,114570,Eri3-201;Eri3-206;Eri3-203,Eri3;Eri3;Eri3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,82,97,140546,ENSMUSG00000033423,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14751,cg26773387,-0.00000756,0.00000198,-3.815475491,0.000164063,loss,ns,0.0000016,0.00000337,0.475350927,0.634871623,pos,ns,0.0000152,0.000986118,0.015397426,0.987725022,pos,ns,0.005363944,0.0000349,0.0000339,1.028496656,0.304518069,pos,ns,0.944210214,Abhd15,Abhd15_Exon,11,77537891,77537940,77537939,77537940,50,+,ATTGGATATTTGTGAAGTGACACTCGTGCTTCTGCTCATGCCCTGCTCCG,"Exon (Taok1-201/Taok1, exon 19 of 19)",11,77515984,77538607,22624,1,Abhd15-202,21907,Abhd15-202;Abhd15-203;Gm12734-201;Taok1-201;Taok1-202,Abhd15;Abhd15;Gm12734;Taok1;Taok1,0;0;-4193;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,6,67477,ENSMUSG00000000686,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25516,cg03578696,-0.0000033,0.00000478,-0.690034333,0.490688848,loss,ns,-0.00000386,0.00000813,-0.475292624,0.634913125,neg,ns,-0.001525982,0.002381481,-0.640769941,0.522145548,neg,ns,0.28220842,-0.00000849,0.0000819,-0.103695566,0.917477998,neg,ns,0.890929991,Fam199x,Fam199x_Exon,X,137074048,137074097,137074096,137074097,50,+,GGGTCCAGTGTTGGAAACTCTGCTTCAAACTCCAGTGCCAACATGAGTCG,"Exon (Fam199x-201/Fam199x, exon 5 of 6)",20,137049594,137082503,32910,1,Fam199x-201,24454,Fam199x-201,Fam199x,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,245622,ENSMUSG00000042595,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23399,cg10932637,-0.0000317,0.00000512,-6.19291754,1.87E-09,loss,yes,0.00000413,0.00000869,0.474947264,0.635158994,pos,ns,0.001678899,0.002546809,0.65921659,0.510246077,pos,ns,0.292220326,-0.0000839,0.0000876,-0.9582468,0.338685056,neg,ns,0.935767834,Ptprf,Ptprf_Intron,4,118252098,118252147,118252098,118252099,50,-,CGAGGTAATTTGAATGCAAATAAGATCAGAGAGAAGCATTAGTATAAAAG,"Intron (Ptprf-201/Ptprf, intron 6 of 32)",4,118208213,118291405,83193,2,Ptprf-201,39258,Ptprf-201;Ptprf-207,Ptprf;Ptprf,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,9,19268,ENSMUSG00000033295,conserved gene and region,4,118251969,118252099,131,*,131,12,0.618320611,1.099300699,0.091603053,5.18E-09,CpGisland,TRUE,U11,Tr-P
26252,cg11053297,-0.0000101,0.00000635,-1.59095247,0.112639484,loss,ns,0.00000512,0.0000108,0.474851066,0.635227487,pos,ns,-0.003816163,0.003160748,-1.207360591,0.228213693,neg,ns,0.641658301,0.0000711,0.000108698,0.654485655,0.513284238,pos,ns,0.868464978,Amot,Amot_Exon,X,145486789,145486838,145486837,145486838,50,+,TGCTGATACCTCATCAGTTGCCCCTCTGTTCTCCCTGGCTGGTTCAGGCG,Promoter (<=1kb),20,145446425,145487046,40622,2,Amot-203,208,Amot-203;Amot-202;Amot-201;Amot-205;Amot-206,Amot;Amot;Amot;Amot;Amot,0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,4,27494,ENSMUSG00000041688,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11944,cg11987336,0.000000441,0.00000859,0.051377302,0.95905796,gain,ns,0.00000693,0.0000146,0.474760519,0.635291959,pos,ns,0.000895155,0.004273568,0.209463077,0.834224339,pos,ns,0.078717143,0.0000692,0.000146968,0.471014705,0.637961506,pos,ns,0.79268438,Psmd14,Psmd14_Intron,2,61765688,61765737,61765736,61765737,50,+,GCTCTATTATCACCTTCACAGAGCTGTCTGCAAATGTGAGAGGCAATTCG,"Intron (Psmd14-201/Psmd14, intron 7 of 11)",2,61711694,61800376,88683,1,Psmd14-201,53994,Psmd14-201;Psmd14-206;Psmd14-207;Psmd14-208,Psmd14;Psmd14;Psmd14;Psmd14,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,9,59029,ENSMUSG00000026914,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23718,cg07963404,-0.00000087,0.000000783,-1.111583548,0.267178592,loss,ns,-0.000000631,0.00000133,-0.474684038,0.635346417,neg,ns,-0.0000448,0.000389479,-0.115066222,0.908467128,neg,ns,0.041690783,0.0000064,0.0000134,0.477523024,0.633326235,pos,ns,0.019041436,Ehd4,Ehd4_Exon,2,120154253,120154302,120154301,120154302,50,+,TCTTGCCGGTGCTGTACTGGCCCACCAGCAGGATCATGGGCTTGTTCTCG,Promoter (<=1kb),2,120089175,120154606,65432,2,Ehd4-201,304,Ehd4-201;Ehd4-202,Ehd4;Ehd4,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,98878,ENSMUSG00000027293,conserved gene and region,2,120154301,120154925,625,*,625,64,0.6528,0.971463267,0.1024,1.85E-49,CpGisland,TRUE,U1,Pr-A
5284,cg08915481,-0.00000028,0.00000153,-0.183162365,0.854790358,loss,ns,-0.00000123,0.0000026,-0.474677443,0.635351113,neg,ns,-0.000516306,0.000761805,-0.677740403,0.498441819,neg,ns,0.302385528,-0.000028,0.0000262,-1.068564587,0.286097282,neg,ns,0.947947502,Ranbp17,Ranbp17_Intron,11,33301058,33301107,33301106,33301107,50,-,CATCTAACTCCATTTTCCTGCAGGGCGTCTTTTGATGAACATTTAGGACG,"Intron (Ranbp17-202/Ranbp17, intron 19 of 27)",11,33211795,33513746,301952,2,Ranbp17-202,212639,Ranbp17-202;Ranbp17-206;Ranbp17-203;Ranbp17-205,Ranbp17;Ranbp17;Ranbp17;Ranbp17,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,31,66011,ENSMUSG00000040594,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18513,cg13643585,0.0000713,0.0000115,6.193227659,1.87E-09,gain,yes,-0.00000928,0.0000196,-0.474501219,0.635476603,neg,ns,-0.000288362,0.005729936,-0.05032546,0.959895445,neg,ns,0.017776069,0.000591196,0.000197052,3.000201859,0.002916887,pos,ns,0.408160313,Hoxb9,Hoxb9_Promoter,11,96271164,96271213,96271164,96271165,50,+,CGTGGCCGCCGGAGCCCTGACGTGATAGCACATTGCATCAGCATAAAACA,Promoter (<=1kb),11,96271457,96276595,5139,1,Hoxb9-201,-244,Hoxb9-201;Hoxb9-202,Hoxb9;Hoxb9,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,7,22,15417,ENSMUSG00000020875,mapped to different genes,11,96271037,96271185,149,*,149,13,0.718120805,0.694265233,0.087248322,1.82E-09,CpGisland,TRUE,U13,Hc-P
16163,cg04709365,-0.000016,0.000015,-1.065688416,0.287393814,loss,ns,0.0000121,0.0000255,0.474467545,0.635500583,pos,ns,-0.014979555,0.007467036,-2.006091181,0.045714967,neg,ns,1.339941586,0.000298227,0.000256791,1.161362362,0.246388016,pos,ns,0.696228103,Pcdh17,Pcdh17_Intergenic_downstream,14,84543504,84543553,84543504,84543505,50,-,CGGTTCCAATGCACATTTTATGAATTTGAACTTGAAATGACTCTAGTTTT,Distal Intergenic,14,84448507,84479227,30721,1,Pcdh17-202,95046,Pcdh17-201,Pcdh17,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,13,219228,ENSMUSG00000035566,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15913,cg04454360,0.0000237,0.00000853,2.782696087,0.005721568,gain,ns,-0.00000688,0.0000145,-0.474434942,0.635523801,neg,ns,-0.004874767,0.004246658,-1.147906462,0.25189224,neg,ns,0.598785212,0.000189054,0.000146042,1.294518075,0.196449952,pos,ns,0.887710006,Cbx3-ps3,Cbx3-ps3_Intergenic_downstream,4,83865637,83865686,83865637,83865638,50,-,CGCTAGACAGACTGTTCTTTATCGCCTTCAGAAGATCAGACATTGACATT,Downstream (<1kb),4,83701084,83702036,953,1,Cbx3-ps3-201,164602,Ccdc171-201;Ccdc171-206;Ccdc171-203,Ccdc171;Ccdc171;Ccdc171,0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,4,4,102641235,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23709,cg25278470,-0.00000209,0.00000594,-0.351600009,0.725377122,loss,ns,0.00000479,0.0000101,0.474284909,0.635630651,pos,ns,-0.001055995,0.002957146,-0.357099519,0.721260271,neg,ns,0.141907989,-0.0000477,0.000101696,-0.468801493,0.63954103,neg,ns,0.88988,Tmem196,Tmem196_Exon,12,120016125,120016174,120016173,120016174,50,-,TACATTAGAGATTGAGGGCTATTGAAATAACCGACTTGCCCAGCTGCCCG,"Exon (Tmem196-205/Tmem196, exon 4 of 5)",12,119945957,120019211,73255,1,Tmem196-201,70168,Tmem196-201;Tmem196-202;Tmem196-204;Tmem196-205;Tmem196-203,Tmem196;Tmem196;Tmem196;Tmem196;Tmem196,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,217951,ENSMUSG00000048004,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3843,cg22777758,-0.00000277,0.00000567,-0.488141492,0.625794709,loss,ns,0.00000457,0.00000963,0.474250152,0.635655405,pos,ns,-0.006406573,0.002822089,-2.270152771,0.023884519,neg,ns,1.621883509,0.000311425,0.0000971,3.208862352,0.001472107,pos,ns,0.853097513,Dmrt1,Dmrt1_Intron,19,25568430,25568479,25568478,25568479,50,-,GGCGGTGAAGTGTTCTTCATAAAAACCAGCTCAGTGTGAAATACACCTCG,"Intron (Dmrt1-201/Dmrt1, intron 4 of 4)",19,25505618,25604329,98712,1,Dmrt1-201,62812,Dmrt1-201;Dmrt1-202,Dmrt1;Dmrt1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,9,50796,ENSMUSG00000024837,conserved gene and region,19,25568478,25568596,119,*,119,10,0.529411765,1.202020202,0.084033613,0.000000335,CpGisland,TRUE,U11,Tr-P
23090,cg26097093,-0.000000999,0.000000804,-1.24256886,0.214965838,loss,ns,-0.000000647,0.00000137,-0.474182727,0.635703427,neg,ns,-0.000259968,0.000399979,-0.649953904,0.516203336,neg,ns,0.287179193,-0.00000163,0.0000138,-0.118577199,0.905687129,neg,ns,0.976269959,Rnf220,Rnf220_Exon,4,117285893,117285942,117285893,117285894,50,+,CGATCCTGCCAGGGGGCGGTTGCACAGGGGACATACCTGCCCTTCATCTT,"Exon (Rnf220-201/Rnf220, exon 7 of 15)",4,117271463,117497052,225590,2,Rnf220-201,211110,Rnf220-201;Rnf220-203;Rnf220-212;Rnf220-202;Rnf220-205;Rnf220-209;Rnf220-213;Rnf220-210;Rnf220-206;Rnf220-208,Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,15,152,66743,ENSMUSG00000028677,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10409,cg22250937,-0.00000249,0.00000189,-1.315615239,0.189275361,loss,ns,-0.00000152,0.00000321,-0.474126597,0.635743405,neg,ns,0.0000217,0.000941764,0.023002206,0.981663312,pos,ns,0.00803744,0.0000129,0.0000324,0.399751848,0.689614591,pos,ns,0.947690289,Aff4,Aff4_Exon,11,53372716,53372765,53372764,53372765,50,-,AGTCATTCCAGGTCTCATGGGAATGATCACCATAGCAAGGAACATCAACG,"Exon (Aff4-201/Aff4, exon 3 of 21)",11,53350833,53421830,70998,1,Aff4-201,21883,Aff4-201;Aff4-207;Aff4-205;Aff4-204;Aff4-206;Aff4-203,Aff4;Aff4;Aff4;Aff4;Aff4;Aff4,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,Exon,3,3,93736,ENSMUSG00000049470,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2326,cg12975220,-0.000000818,0.00000116,-0.70440997,0.48170633,loss,ns,0.000000936,0.00000197,0.474116847,0.63575035,pos,ns,0.001077835,0.000578091,1.864470858,0.06320054,pos,ns,1.199279209,-0.0000453,0.0000199,-2.276554569,0.023494298,neg,ns,0.041423229,Meis1,Meis1_fiveUTR,11,19018597,19018646,19018645,19018646,50,-,TCATGGCTTTCTGCCACTCCAGCTGTCAATCACAGGCGAGGTTGTCAACG,Promoter (<=1kb),11,18879817,19018985,139169,2,Meis1-206,339,Meis1-206;Meis1-202;Meis1-209;Meis1-201;Meis1-208;Meis1-207;Meis1-204;Meis1-205,Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,7,88,17268,ENSMUSG00000020160,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
5053,cg14790506,-0.0000117,0.00000657,-1.7846529,0.075295433,loss,ns,-0.00000529,0.0000112,-0.474091562,0.635768359,neg,ns,0.005135068,0.003270512,1.570111128,0.117409359,pos,ns,0.930297283,-0.000337884,0.000112473,-3.004146405,0.002880401,neg,ns,0.881550902,Nsg2,Nsg2_Exon,11,32057509,32057558,32057509,32057510,50,+,CGCTTCTACACAGTCATCAGCCACTACAGCGTGGCCAAGCAGAGCACTGC,"Exon (Nsg2-201/Nsg2, exon 5 of 5)",11,32000463,32059202,58740,1,Nsg2-201,57046,Nsg2-201,Nsg2,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,18197,ENSMUSG00000020297,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14182,cg16972488,0.0000578,0.00000462,12.49970392,2.61E-29,gain,yes,-0.00000372,0.00000785,-0.474003418,0.635831143,neg,ns,0.011670142,0.002300738,5.072346762,0.000000678,pos,ns,6.168861304,-0.000239784,0.0000791,-3.030554243,0.002646726,neg,ns,0.050416168,Hoxd3,Hoxd3_fiveUTR,2,74732903,74732952,74732951,74732952,50,+,TTAAGAAACACGGAGTCGTCATTAATCTGCCACGCAAAGGGCTCTCTCCG,Promoter (<=1kb),2,74732913,74744214,11302,1,Hoxd3-205,0,Gm28230-201;Hoxd3-203;Hoxd3-205;Hoxd3-202;Hoxd4-203;Hoxd4-201;Hoxd4-202,Gm28230;Hoxd3;Hoxd3;Hoxd3;Hoxd4;Hoxd4;Hoxd4,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,8,24,15434,ENSMUSG00000079277,conserved gene but different region,2,74732626,74733055,430,*,430,35,0.590697674,0.938923202,0.081395349,1.14E-23,CpGisland,TRUE,U13,Hc-P
4235,cg26307512,0.000000898,0.00000156,0.576436965,0.564738156,gain,ns,0.00000125,0.00000265,0.473922613,0.635888701,pos,ns,0.000166256,0.000775343,0.214429494,0.830353124,pos,ns,0.080737176,0.0000282,0.0000267,1.058561168,0.290623809,pos,ns,0.960288985,Rfx3,Rfx3_threeUTR,19,27800139,27800188,27800139,27800140,50,+,CGGTTGAGGTCACTAAGCATCTGGTTGATTTGGGAAGTGTTCTGAAGCAC,3' UTR,19,27761721,27982948,221228,2,Rfx3-202,182760,Rfx3-202;Rfx3-201;Rfx3-208;Rfx3-203;Rfx3-204;Rfx3-206;Rfx3-205,Rfx3;Rfx3;Rfx3;Rfx3;Rfx3;Rfx3;Rfx3,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,15,19726,ENSMUSG00000040929,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12396,cg24615318,0.0000221,0.00000381,5.810320421,1.55E-08,gain,yes,-0.00000307,0.00000647,-0.473858643,0.63593427,neg,ns,0.005848838,0.001896168,3.084556888,0.002222157,pos,ns,2.653225236,-0.000218255,0.0000652,-3.346997661,0.000917508,neg,ns,0.042622468,Fign,Fign_fiveUTR,2,64096986,64097035,64097034,64097035,50,+,CATTAAAGCCACTTTTCCTCTCAGCTATCAAATGTCACTGCCTTGAAACG,Promoter (<=1kb),2,63971507,64098012,126506,2,Fign-203,977,Fign-203;Fign-201;Fign-202;Fign-204,Fign;Fign;Fign;Fign,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,84,60344,ENSMUSG00000075324,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
17508,cg14043264,-0.0000231,0.0000119,-1.940438499,0.053232897,loss,ns,-0.00000958,0.0000202,-0.473644086,0.636087116,neg,ns,-0.007522683,0.005923057,-1.270067499,0.205013053,neg,ns,0.688218486,-0.0000108,0.000203693,-0.053239545,0.95757534,neg,ns,0.586505885,Anks1b,Anks1b_fiveUTR,10,90577150,90577199,90577150,90577151,50,-,CGAGAACCACCTGATGGCTAATGGATTTGACAATGTGCAGTTTATGGTAA,5' UTR,10,89873509,90970219,1096711,1,Anks1b-233,703641,Anks1b-233;Anks1b-222;Anks1b-203;Anks1b-214;Anks1b-215;Anks1b-208;Anks1b-210;Anks1b-221;Anks1b-219;Anks1b-213;Anks1b-216;Anks1b-224;Anks1b-206;Anks1b-207;Anks1b-209;Anks1b-231;Anks1b-218;Anks1b-217;Anks1b-201,Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,TRUE,TRUE,TRUE,FALSE,FALSE,fiveUTR,9,14,77531,ENSMUSG00000058589,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7827,cg25496758,-0.000000101,0.000000391,-0.258714826,0.796026974,loss,ns,0.000000314,0.000000664,0.473503672,0.636187153,pos,ns,-0.00053724,0.000194527,-2.7617822,0.006091621,neg,ns,2.215267094,0.00000941,0.00000669,1.407185643,0.160374163,pos,ns,0.989542351,Ldb2,Ldb2_threeUTR,5,44473398,44473447,44473398,44473399,50,+,CGTCCATGCCGTTGGCCGCATCATATTGCGTGTTTTCTAATCTAGTGATT,3' UTR,5,44472132,44799619,327488,2,Ldb2-207,326172,Ldb2-207;Ldb2-201;Ldb2-204;Ldb2-205,Ldb2;Ldb2;Ldb2;Ldb2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,9,16826,ENSMUSG00000039706,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11108,cg05545083,0.0000927,0.0000116,8.019461564,2.20E-14,gain,yes,-0.00000929,0.0000196,-0.473491037,0.636196155,neg,ns,0.023930214,0.00575077,4.161219195,0.000041,pos,ns,4.386728729,-0.00062555,0.000197769,-3.163043274,0.001715987,neg,ns,0.371479606,Lingo1,Lingo1_Intron,9,56622915,56622964,56622963,56622964,50,+,GTCACACACGCTCCAGTGACCCACCAGAAAAGCAAACATCCTGACAGGCG,"Intron (Lingo1-201/Lingo1, intron 3 of 3)",9,56618475,56685253,66779,2,Lingo1-201,62289,Lingo1-201;Lingo1-206;Lingo1-203;Lingo1-202,Lingo1;Lingo1;Lingo1;Lingo1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,25,235402,ENSMUSG00000049556,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25231,cg16390723,0.00000128,0.0000033,0.388870264,0.69763908,gain,ns,0.00000265,0.00000561,0.47325307,0.63636571,pos,ns,0.002693081,0.00164327,1.638855359,0.102257837,pos,ns,0.990303397,-0.0000594,0.0000565,-1.051823314,0.293699819,neg,ns,0.019345503,Lin28a,Lin28a_fiveUTR,4,134018099,134018148,134018099,134018100,50,-,CGGGCGGTCATGGACAGGAAGCCGAACCCCATGCGCACGTTGAACCACTT,Promoter (<=1kb),4,134003330,134018841,15512,2,Lin28a-201,693,Lin28a-201;Lin28a-204,Lin28a;Lin28a,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,5,83557,ENSMUSG00000050966,conserved gene but different region,4,134018067,134018242,176,*,176,24,0.721590909,1.052841476,0.136363636,3.84E-22,CpGisland,TRUE,U3,Pr-B
12464,cg17566503,-0.0000311,0.0000075,-4.143003321,0.0000443,loss,ns,-0.00000603,0.0000127,-0.473110041,0.636467629,neg,ns,-0.005571687,0.003731191,-1.493273123,0.136382773,neg,ns,0.865240485,0.000122184,0.000128315,0.95221291,0.341730852,pos,ns,0.894735702,Onecut2,Onecut2_threeUTR,18,64396087,64396136,64396087,64396088,50,-,CGGGACGAGTGCCTTGCTTGAACCAAAGCAACGATTTAGCCAGTCTGGAC,3' UTR,18,64340020,64400987,60968,1,Onecut2-201,56067,Onecut2-201,Onecut2,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,19,225631,ENSMUSG00000045991,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22883,cg24504442,0.0000582,0.00000721,8.071542267,1.55E-14,gain,yes,0.0000058,0.0000123,0.473086964,0.636484073,pos,ns,0.007757862,0.00359014,2.160880233,0.031470235,pos,ns,1.502100014,-0.000175431,0.000123465,-1.420901491,0.156350478,neg,ns,0.096892417,Meis2,Meis2_fiveUTR,2,116064773,116064822,116064821,116064822,50,-,CTAGGTAAGTGTTGGAGATTTAAACCTACCCTTTGCGCCATCAGTCTGCG,Promoter (<=1kb),2,115863064,116065047,201984,2,Meis2-201,225,Meis2-201;Meis2-203;Meis2-205;Meis2-206;Meis2-204;Meis2-202;Meis2-213;Meis2-210;Meis2-209,Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2,0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,11,97,17536,ENSMUSG00000027210,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
10093,cg08264790,0.000128455,0.00002,6.414173919,5.28E-10,gain,yes,0.0000161,0.000034,0.473026064,0.636527472,pos,ns,0.038279523,0.0099675,3.840433726,0.00014893,pos,ns,3.827018292,-0.000866066,0.000342782,-2.526583656,0.012015228,neg,ns,0.540449169,Gm28308,Gm28308_threeUTR,6,52169362,52169411,52169362,52169363,50,+,CGAACGGATGGGGATAAATAATATTTAAAACTTAGATTATTCAATGCTTG,3' UTR,6,52163359,52213339,49981,2,Gm28308-201,43928,Gm28308-201;Hoxa2-201;Hoxa3-201;Hoxa3-202,Gm28308;Hoxa2;Hoxa3;Hoxa3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,103,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
9582,cg01657263,0.00000393,0.0000206,0.191108142,0.848565971,gain,ns,0.0000165,0.0000349,0.472977047,0.636562404,pos,ns,-0.00435049,0.010231636,-0.42519987,0.67098598,neg,ns,0.173286554,0.0000891,0.000351865,0.253234967,0.800254499,pos,ns,0.410841091,Foxg1,Foxg1_threeUTR,12,49386724,49386773,49386724,49386725,50,-,CGCATAAATTTGAGTGATTGTTAATGTTGTCTTAAAATTTCTTGATTGTG,3' UTR,12,49382883,49386855,3973,1,Foxg1-204,3841,Foxg1-202;Foxg1-203;Foxg1-204;Foxg1-201;Gm43517-201,Foxg1;Foxg1;Foxg1;Foxg1;Gm43517,0;3924;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,27,15228,ENSMUSG00000020950,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
23412,cg20606660,-0.00000229,0.00000132,-1.73340771,0.084017548,loss,ns,-0.00000106,0.00000224,-0.472950244,0.636581504,neg,ns,0.001012756,0.000657164,1.541099978,0.124312579,pos,ns,0.905484922,-0.0000389,0.0000226,-1.721018865,0.08624514,neg,ns,0.041313713,Sp4,Sp4_Exon,12,118300726,118300775,118300774,118300775,50,-,ATTGTTATTCTCTGGCTCAGAGGTTTTCCCTCCTTCTGTAGCCATCGCCG,Promoter (<=1kb),12,118234933,118301370,66438,2,Sp4-201,595,Sp4-201;Sp4-203;Sp4-202,Sp4;Sp4;Sp4,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,14,20688,ENSMUSG00000025323,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
6134,cg27608858,0.0000512,0.00000977,5.247169488,0.000000287,gain,yes,0.00000785,0.0000166,0.472918332,0.636604247,pos,ns,0.020357002,0.004861196,4.187653448,0.0000368,pos,ns,4.434455985,-0.00042609,0.000167176,-2.548750444,0.011292747,neg,ns,0.321834021,Rpl17-ps9,Rpl17-ps9_Intergenic_downstream,7,36136845,36136894,36136845,36136846,50,+,CGGATGAAAAGGCAGTGCAGATGTAATTTGTTTTCAATGGCTGTTTCAAA,Distal Intergenic,7,36118274,36118828,555,1,Rpl17-ps9-201,18571,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,22,100043872,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4709,cg13408895,0.00000362,0.00000826,0.438565575,0.661281824,gain,ns,-0.00000664,0.000014,-0.472829064,0.636667866,neg,ns,-0.00045447,0.004112729,-0.110503321,0.912081721,neg,ns,0.039966248,-0.0000948,0.000141436,-0.67058511,0.502984146,neg,ns,0.860328745,Pik3c3,Pik3c3_Intergenic_upstream,18,30197797,30197846,30197845,30197846,50,-,CATTAACTCACTCTGTCTCGCAAATAATCAGGGCCTACGCAGTGTAGACG,Distal Intergenic,18,30272747,30348126,75380,1,Pik3c3-203,-74950,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,5,225326,ENSMUSG00000033628,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19070,cg03069282,-0.0000186,0.00000409,-4.532808732,0.00000832,loss,ns,-0.00000329,0.00000695,-0.472813579,0.636678902,neg,ns,0.006963192,0.002036833,3.418636968,0.000713507,pos,ns,3.146601995,-0.000336693,0.00007,-4.806702814,0.0000024,neg,ns,0.075323474,Neurod2,Neurod2_Intergenic_downstream,11,98319329,98319378,98319329,98319330,50,+,CGAGGTAACAGGCATTTGTTACCCAGCTCGTGCCAGGAGCGATTGGCAGG,Distal Intergenic,11,98325415,98329648,4234,2,Neurod2-201,10270,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,22,18013,ENSMUSG00000038255,conserved gene and region,11,98319210,98319400,191,*,191,12,0.654450262,0.587090164,0.062827225,0.000000358,CpGisland,TRUE,U13,Hc-P
24335,cg08146829,0.0000103,0.00000626,1.639479111,0.102127881,gain,ns,-0.00000503,0.0000106,-0.472631228,0.636808869,neg,ns,0.009047325,0.003117814,2.901816606,0.003975775,pos,ns,2.400578191,-0.000354919,0.000107221,-3.31015444,0.001042443,neg,ns,0.131698681,Pou3f1,Pou3f1_Intergenic_downstream,4,124672444,124672493,124672444,124672445,50,+,CGTTTGGCTGCGGTCCCACACCTTGCAGCTCATTATAAATATGCAGTCGC,Distal Intergenic,4,124656807,124660655,3849,1,Pou3f1-201,15637,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,11,85,18991,ENSMUSG00000090125,mapped to different genes,4,124672392,124672501,110,*,110,9,0.609090909,0.906593407,0.081818182,0.00000205,CpGisland,TRUE,U13,Hc-P
11987,cg13327466,0.0000283,0.00000527,5.381260117,0.000000146,gain,yes,0.00000423,0.00000895,0.472540764,0.63687335,pos,ns,0.005334467,0.002620946,2.035321703,0.042668805,pos,ns,1.369889524,-0.000191247,0.0000901,-2.121806178,0.034646985,neg,ns,0.121083765,Slc4a10,Slc4a10_fiveUTR,2,62046481,62046530,62046481,62046482,50,-,CGAGTGAGTAGGAGCCATGTGACTCTGGTGAGTTGGAGTGTGCAATTGCC,Promoter (<=1kb),2,62046462,62326730,280269,1,Slc4a10-202,19,Slc4a10-202;Slc4a10-206;Slc4a10-201;Slc4a10-203,Slc4a10;Slc4a10;Slc4a10;Slc4a10,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,12,94229,ENSMUSG00000026904,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12723,cg06274662,0.00000474,0.00000535,0.885225982,0.376720872,gain,ns,-0.00000429,0.00000909,-0.472496625,0.636904813,neg,ns,0.001296218,0.002662629,0.486818936,0.626730664,pos,ns,0.202919056,0.000102179,0.0000916,1.115881229,0.265337205,pos,ns,0.134829872,Shox2,Shox2_Exon,3,66973933,66973982,66973981,66973982,50,-,CAATGACTATCCTAGGGTGACAACAGAATAGAAACAGAGCATTAACGGCG,"Exon (Shox2-201/Shox2, exon 5 of 5)",3,66971727,66981318,9592,2,Shox2-203,7336,Shox2-203;Shox2-201;Shox2-202;Shox2-204;Shox2-205,Shox2;Shox2;Shox2;Shox2;Shox2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,7,20429,ENSMUSG00000027833,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
19716,cg02839202,-0.00000892,0.00000232,-3.844378689,0.000146662,loss,ns,0.00000186,0.00000394,0.472337818,0.637018016,pos,ns,0.000366573,0.00115463,0.31748118,0.751092248,pos,ns,0.12430672,0.00000434,0.0000397,0.109196009,0.913117675,pos,ns,0.951456307,Fam168a,Fam168a_threeUTR,7,100836113,100836162,100836113,100836114,50,-,CGGAAGTGCAAGGGTCACTTTATGCATCTTTAATGGTTTTGATTTTTATT,3' UTR,7,100706635,100841381,134747,1,Fam168a-202,129478,Fam168a-202;Fam168a-204;Fam168a-201;Fam168a-205;Fam168a-206;Fam168a-210,Fam168a;Fam168a;Fam168a;Fam168a;Fam168a;Fam168a,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,5,319604,ENSMUSG00000029461,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15225,cg19926979,0.000027,0.00000679,3.979776799,0.000086,gain,ns,-0.00000544,0.0000115,-0.472331499,0.63702252,neg,ns,-0.001773759,0.003377164,-0.52522131,0.599804791,neg,ns,0.22199007,0.000216735,0.00011614,1.866150175,0.062964509,pos,ns,0.109873664,Pcdh8,Pcdh8_Promoter,14,79772020,79772069,79772068,79772069,50,+,TTGGAAAGGTTTCAAAGATCAGACTGTATCAAAGGCTTATGAAGCCCTCG,Promoter (<=1kb),14,79766784,79771312,4529,2,Pcdh8-203,-708,Pcdh8-201;Pcdh8-204;Pcdh8-203;Pcdh8-202,Pcdh8;Pcdh8;Pcdh8;Pcdh8,-708;-708;-708;-816,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,3,5,18530,ENSMUSG00000036422,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
9606,cg03053409,-0.0000166,0.00000377,-4.409022742,0.0000143,loss,ns,0.00000303,0.00000641,0.47220217,0.637114717,pos,ns,-0.000353582,0.001877941,-0.188281599,0.8507791,neg,ns,0.070183188,-0.000121916,0.0000646,-1.887759891,0.059992027,neg,ns,0.933598882,Ncam1,Ncam1_threeUTR,9,49503656,49503705,49503704,49503705,50,+,TTTTATTTCAATACTATGACAAAAACACGTTTCACACTAAAATATTCACG,3' UTR,9,49502136,49798925,296790,2,Ncam1-204,295220,Ncam1-204;Ncam1-205;Ncam1-202,Ncam1;Ncam1;Ncam1,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,16,17967,ENSMUSG00000039542,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19464,cg02551294,-0.000011,0.0000037,-2.960501123,0.003308426,loss,ns,0.00000297,0.00000629,0.472175651,0.637133623,pos,ns,-0.003481619,0.001842246,-1.889877471,0.059707144,neg,ns,1.223973704,0.0000316,0.0000634,0.498500745,0.618484649,pos,ns,0.929637557,Gm12685,Gm12685_Intergenic_downstream,4,99374894,99374943,99374942,99374943,50,+,AAGTTATAATTGATATCGGGGCCCATCACCATAATGGGTTCATCATAGCG,Distal Intergenic,4,99418498,99418711,214,2,Gm12685-201,43768,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,13,13,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26877,cg02314721,-0.00000397,0.00000455,-0.873307352,0.383171545,loss,ns,0.00000365,0.00000772,0.47217521,0.637133937,pos,ns,-0.000209646,0.002262786,-0.092649613,0.926241773,neg,ns,0.033275636,-0.000129014,0.0000778,-1.657914737,0.098346197,neg,ns,0.951216688,Cacna1e,Cacna1e_Exon,1,154418008,154418057,154418008,154418009,50,-,CGCACTAATTTGTACATATCCTTATACGGGATCCTGCCGCTGTAAAGGAA,"Exon (Cacna1e-208/Cacna1e, exon 2 of 3)",1,154390731,154726356,335626,2,Cacna1e-203,308299,Cacna1e-203;Cacna1e-201;Cacna1e-207;Cacna1e-208,Cacna1e;Cacna1e;Cacna1e;Cacna1e,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,19,12290,ENSMUSG00000004110,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4504,cg15558507,-0.0000643,0.00000822,-7.825228506,8.06E-14,loss,yes,0.00000659,0.000014,0.47204892,0.637223974,pos,ns,-0.005255256,0.004090569,-1.284724872,0.199847585,neg,ns,0.699301094,0.0000579,0.000140674,0.411865252,0.680722824,pos,ns,0.825527829,Dpf1,Dpf1_Intron,7,29313532,29313581,29313532,29313533,50,-,CGGGCGTAATATTTCTGGGTCTGATTTATTGTTTCAATTAGAGCTTGGGG,"Intron (Dpf1-204/Dpf1, intron 7 of 11)",7,29303951,29317264,13314,1,Dpf1-204,9581,Dpf1-204;Dpf1-201;Dpf1-203;Dpf1-208;Dpf1-202;Dpf1-210;Dpf1-207;Dpf1-205;Dpf1-209;Dpf1-206;Dpf1-211,Dpf1;Dpf1;Dpf1;Dpf1;Dpf1;Dpf1;Dpf1;Dpf1;Dpf1;Dpf1;Dpf1,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,4,29861,ENSMUSG00000030584,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13016,cg02232023,-0.0000393,0.0000191,-2.057831084,0.040442207,loss,ns,-0.0000153,0.0000324,-0.472048661,0.637224158,neg,ns,-0.010352615,0.009497128,-1.090078471,0.276525181,neg,ns,0.558265315,-0.000140366,0.000326605,-0.429773279,0.667659148,neg,ns,0.67590508,Rora,Rora_Intron,9,69150747,69150796,69150795,69150796,50,+,TCTTCCCTTTTTTAATTTCCTCCTTGTCCTTTTTGATTATCTACCCCACG,"Intron (Rora-201/Rora, intron 1 of 10)",9,68653786,69388246,734461,1,Rora-201,496961,Rora-201;Rora-206,Rora;Rora,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,19,19883,ENSMUSG00000032238,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22698,cg22508587,0.0000228,0.00000272,8.384293805,1.81E-15,gain,yes,0.00000218,0.00000462,0.472020384,0.637244319,pos,ns,0.003049959,0.001353735,2.252995994,0.024958283,pos,ns,1.602785287,-0.0000217,0.0000466,-0.465897202,0.641616256,neg,ns,0.929453571,BC052040,BC052040_Intron,2,115727134,115727183,115727134,115727135,50,-,CGGAAAGTGAAAAGGCTTCAGTTTGTCAAGTACTTAGAACAATCAGAGAA,"Intron (BC052040-203/BC052040, intron 10 of 10)",2,115581716,115778768,197053,1,BC052040-203,145418,BC052040-203;BC052040-201,BC052040;BC052040,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,37,49,399568,ENSMUSG00000040282,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6894,cg21047763,3.94E-08,0.00000509,0.007732175,0.993835651,gain,ns,0.00000408,0.00000865,0.471993269,0.637263651,pos,ns,-0.003379543,0.002535461,-1.332910709,0.183539887,neg,ns,0.736269539,0.0000565,0.0000872,0.648426596,0.517189087,pos,ns,0.88720014,Gm18591,Gm18591_Intergenic_downstream,12,39342040,39342089,39342040,39342041,50,-,CGCCACAGGGTGGCACAGCAGGAAGCTGAAACACTGATGAAACAGTGTTC,Distal Intergenic,12,39208892,39209654,763,1,Gm18591-201,133197,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,5,100417403,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1187,cg18050288,0.0000507,0.00000858,5.91084576,8.97E-09,gain,yes,-0.00000688,0.0000146,-0.471891963,0.637335882,neg,ns,0.014150412,0.004270722,3.313353983,0.001030996,pos,ns,2.986742923,-0.000472975,0.00014687,-3.220367984,0.001416125,neg,ns,0.510168792,Gm14512,Gm14512_Intergenic_downstream,X,12001475,12001524,12001475,12001476,50,+,CGGTAACCCCCATGATTAATTCATAACTCTCCACTGCGCCTGGCACCGTC,Distal Intergenic,20,11984468,11984697,230,1,Gm14512-201,17007,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,22,22,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
11150,cg19279211,-0.0000033,0.00000173,-1.909328067,0.057142784,loss,ns,-0.00000139,0.00000294,-0.471871216,0.637350675,neg,ns,-0.000269382,0.000861186,-0.312803242,0.754640479,neg,ns,0.122259903,0.0000322,0.0000296,1.088871933,0.277056125,pos,ns,0.965120917,Pspc1,Pspc1_Exon,14,56771702,56771751,56771750,56771751,50,+,TACGTTGTTAGCAAGAATGCCCCATCACCACATCTTTCCAGAGCCTTTCG,"Exon (Pspc1-201/Pspc1, exon 2 of 9)",14,56720710,56778316,57607,2,Pspc1-201,6565,Pspc1-201;Pspc1-202;Pspc1-204,Pspc1;Pspc1;Pspc1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,66645,ENSMUSG00000021938,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17743,cg05788855,0.000000842,0.00000278,0.302399173,0.762550579,gain,ns,-0.00000223,0.00000473,-0.471857416,0.637360515,neg,ns,0.000354632,0.001385168,0.256021245,0.798104237,pos,ns,0.097940383,-0.0000395,0.0000476,-0.828290251,0.40814337,neg,ns,0.953701862,Ckap5,Ckap5_Exon,2,91600639,91600688,91600687,91600688,50,+,AGCCAAGCCCGAAGCATGAGTGGGCATCCTGAGGCAGCCCAGATGGTCCG,"Exon (Ckap5-204/Ckap5, exon 34 of 44)",2,91526762,91620664,93903,1,Ckap5-204,73877,Ckap5-204;Ckap5-201;Ckap5-202;Ckap5-203;Ckap5-209;Ckap5-206,Ckap5;Ckap5;Ckap5;Ckap5;Ckap5;Ckap5,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,75786,ENSMUSG00000040549,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25046,cg21514135,-0.0000205,0.0000107,-1.924046382,0.05526408,loss,ns,0.00000856,0.0000181,0.471754495,0.637433901,pos,ns,0.000234835,0.005313444,0.04419637,0.96477633,pos,ns,0.01557336,-0.000149163,0.000182729,-0.816310347,0.41494948,neg,ns,0.818140256,Fgfr2,Fgfr2_Intron,7,131797010,131797059,131797058,131797059,50,-,AGGGTAATTCACATATAATGCTTTTATTTAATAGCCCAATTTACAAAACG,"Intron (Fgfr2-217/Fgfr2, intron 2 of 6)",7,130162451,133123350,2960900,2,Fgfr2-217,1326291,Fgfr2-217,Fgfr2,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,58,79,14183,ENSMUSG00000030849,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13824,cg18948962,0.0000412,0.00000469,8.791922682,1.03E-16,gain,yes,0.00000376,0.00000797,0.471707601,0.637467339,pos,ns,0.006598913,0.002334953,2.826144118,0.005017141,pos,ns,2.299543661,0.000000829,0.0000803,0.010329765,0.991764831,pos,ns,0.080012034,Six1,Six1_Exon,12,73045915,73045964,73045963,73045964,50,-,CAGTTGCTGACCTGGGTGGTGGTGAGGCCGGTGGCCTCGGCCAGCTCCCG,"Exon (Six1-201/Six1, exon 1 of 2)",12,73041827,73047179,5353,2,Six1-201,1215,Six1-204;Six1-201;Six1-203;Six1-202,Six1;Six1;Six1;Six1,0;0;0;-624,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,18,20471,ENSMUSG00000051367,conserved gene and region,12,73045722,73046158,437,*,437,46,0.679633867,0.912400145,0.105263158,2.63E-36,CpGisland,TRUE,U3,Pr-B
27280,cg13758628,-0.00000081,0.00000855,-0.094756242,0.924569663,loss,ns,-0.00000685,0.0000145,-0.471642269,0.637513927,neg,ns,-0.014176049,0.004255735,-3.331046376,0.000969782,neg,ns,3.013325994,0.000527652,0.000146354,3.605306106,0.000363188,pos,ns,0.625646126,Gtsf1l,Gtsf1l_Intergenic_upstream,2,163111906,163111955,163111906,163111907,50,-,CGTGTAATGAAGTGGTTGTTATGGCAACAACTTTCAAAAGCAAGTATTTT,Distal Intergenic,2,163087034,163087855,822,2,Gtsf1l-201,-24100,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,5,68236,ENSMUSG00000070708,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26289,cg23145794,-0.0000334,0.0000094,-3.549503314,0.000445773,loss,ns,-0.00000753,0.000016,-0.471585407,0.637554476,neg,ns,-0.00825154,0.004678253,-1.763808013,0.07874928,neg,ns,1.103753407,-0.0000427,0.000160885,-0.265284876,0.790966334,neg,ns,0.823908239,Ralgapa2,Ralgapa2_Intron,2,146290953,146291002,146290953,146290954,50,+,CGAATCCAGACACCATATGCCATGCGAAGGCCTATTACTTTATTCGGTGC,"Intron (Ralgapa2-202/Ralgapa2, intron 38 of 40)",2,146239879,146512004,272126,2,Ralgapa2-202,221002,Ralgapa2-202;Ralgapa2-211;Ralgapa2-210;Ralgapa2-205;Ralgapa2-208,Ralgapa2;Ralgapa2;Ralgapa2;Ralgapa2;Ralgapa2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,26,241694,ENSMUSG00000037110,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17931,cg20668045,-0.0000027,0.00000184,-1.465063689,0.143916986,loss,ns,0.00000147,0.00000313,0.47147345,0.637634316,pos,ns,0.000490984,0.000915642,0.536218265,0.592192265,pos,ns,0.22753727,-0.0000352,0.0000315,-1.11862588,0.264165837,neg,ns,0.955576358,Ccdc158,Ccdc158_Exon,5,92649940,92649989,92649940,92649941,50,+,CGCTCCATCTGGCCCTGACACTCGCTCTTCAAGGCCTTGAGCAGGGCTTC,"Exon (Ccdc158-201/Ccdc158, exon 11 of 25)",5,92608253,92675125,66873,2,Ccdc158-201,25136,Ccdc158-201;Ccdc158-204;Ccdc158-203,Ccdc158;Ccdc158;Ccdc158,0;25276;25282,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,320696,ENSMUSG00000050050,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10004,cg06079669,-0.0000368,0.0000104,-3.551248097,0.000442944,loss,ns,-0.0000083,0.0000176,-0.471225827,0.637810919,neg,ns,0.00276121,0.005160415,0.535075149,0.592981497,pos,ns,0.226958858,-0.000527513,0.000177466,-2.972468019,0.003185618,neg,ns,0.456585201,Satb1,Satb1_Intron,17,51823617,51823666,51823665,51823666,50,+,ACTAAGGAGCATCACATGATTATTTAATTACAGCTCTAATTTTTGTCTCG,"Intron (Satb1-208/Satb1, intron 1 of 10)",17,51736187,51832672,96486,2,Satb1-208,9006,Satb1-208;Satb1-213;Satb1-204;Satb1-203;Satb1-202;Satb1-201;Satb1-210;Satb1-212,Satb1;Satb1;Satb1;Satb1;Satb1;Satb1;Satb1;Satb1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,28,36,20230,ENSMUSG00000023927,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20175,cg20125045,0.00000535,0.00000482,1.109508793,0.268070696,gain,ns,0.00000386,0.00000819,0.470963431,0.637998081,pos,ns,0.002262569,0.002400412,0.942575092,0.346632257,pos,ns,0.460131025,-0.0000299,0.0000825,-0.362278447,0.717390807,neg,ns,0.870921023,Gm49473,Gm49473_Intergenic_upstream,15,102830768,102830817,102830768,102830769,50,+,CGTATAAATAATGTGGCAAATAGTTCAATAGAGCCATAAAAAAAGTGATT,Distal Intergenic,15,102795121,102795371,251,2,Gm49473-201,-35397,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,12,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
110,cg13563035,0.00000196,0.000002,0.978970476,0.328357928,gain,ns,-0.0000016,0.0000034,-0.470870489,0.63806438,neg,ns,-0.001182135,0.000996157,-1.186696002,0.236256178,neg,ns,0.626616826,-0.0000259,0.0000343,-0.755290334,0.450648258,neg,ns,0.949198514,Nox3,Nox3_Intergenic_upstream,17,4222064,4222113,4222112,4222113,50,-,AACAGAAATCTAAGTCATTTTCCCCTGCAGTATCATATCAGCAGTAACCG,Distal Intergenic,17,3635240,3696261,61022,2,Nox3-201,-525852,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,6,224480,ENSMUSG00000023802,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13314,cg01460805,0.0000416,0.0000102,4.065824508,0.0000607,gain,ns,0.00000819,0.0000174,0.470814168,0.638104558,pos,ns,0.00871418,0.005093902,1.710708246,0.088135395,pos,ns,1.054849646,-0.0000297,0.000175179,-0.169566635,0.865461561,neg,ns,0.018837196,Egr3,Egr3_Exon,14,70078038,70078087,70078086,70078087,50,-,TGGAGCCATGTGCGGCGTGGAGTCCCCGCGGTGGGAGAGGTACTGCGACG,Promoter (<=1kb),14,70077203,70079955,2753,1,Egr3-201,835,Egr3-201;Egr3-204;Egr3-203;Egr3-202,Egr3;Egr3;Egr3;Egr3,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,19,13655,ENSMUSG00000033730,conserved gene but different region,14,70077522,70078261,740,*,740,58,0.663513514,0.734126984,0.078378378,7.78E-38,CpGisland,TRUE,U3,Pr-B
3954,cg04086891,-0.0000864,0.0000156,-5.521565613,7.11E-08,loss,yes,0.0000125,0.0000266,0.470432766,0.638376665,pos,ns,-0.024482093,0.00778563,-3.144523175,0.001824762,neg,ns,2.738793678,0.000450784,0.000267747,1.68361752,0.093262264,pos,ns,0.74291437,Gm7847,Gm7847_Intergenic_upstream,18,25904964,25905013,25905012,25905013,50,-,GTGCACAGAACCATTTGTTTCCACATTGTTTTTATTAAACAAGAAAGGCG,Distal Intergenic,18,25823581,25824357,777,2,Gm7847-201,-80656,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,22,665916,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20160,cg02994349,0.000116443,0.00000763,15.25437686,1.39E-39,gain,yes,-0.0000061,0.000013,-0.470364343,0.638425486,neg,ns,0.008620311,0.00379923,2.26896259,0.023957685,pos,ns,1.620555146,0.0000724,0.000130655,0.554352062,0.579737616,pos,ns,0.130563897,Sgip1,Sgip1_fiveUTR,4,102760221,102760270,102760269,102760270,50,-,TCTCCGGGGGTATTGTGTCAGGAGATGCAGGCTGGCTACCATGTGACGCG,5' UTR,4,102741297,102870826,129530,1,Sgip1-204,18924,Sgip1-204;Sgip1-212;Sgip1-201;Sgip1-208;Sgip1-202;Sgip1-214;Sgip1-207;Sgip1-203;Sgip1-209;Sgip1-215;Sgip1-205,Sgip1;Sgip1;Sgip1;Sgip1;Sgip1;Sgip1;Sgip1;Sgip1;Sgip1;Sgip1;Sgip1,0;0;0;-58;0;-82;-85;0;-105;-195;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,6,73094,ENSMUSG00000028524,conserved gene but different region,4,102760267,102760321,55,*,55,7,0.727272727,1.002604167,0.127272727,0.00000255,CpGisland,TRUE,NA,NRS
15992,cg07138437,0.0000231,0.0000118,1.953077449,0.051709893,gain,ns,-0.00000946,0.0000201,-0.470189776,0.638550048,neg,ns,0.019763155,0.005895527,3.35222862,0.000900945,pos,ns,3.045301852,-0.000478122,0.000202747,-2.358223071,0.018983309,neg,ns,0.360158762,Dysf,Dysf_Intron,6,84105648,84105697,84105648,84105649,50,+,CGGCACCCTCGGGGCAGTAAATATTATATTACTACAGGGTGTGCAGTACG,"Intron (Dysf-204/Dysf, intron 22 of 54)",6,84008590,84211060,202471,1,Dysf-204,97058,Dysf-204;Dysf-205;Dysf-213;Dysf-215;Dysf-210;Dysf-211;Dysf-212;Dysf-214;Dysf-216;Dysf-202;Dysf-203;Dysf-201;Dysf-206;Dysf-209,Dysf;Dysf;Dysf;Dysf;Dysf;Dysf;Dysf;Dysf;Dysf;Dysf;Dysf;Dysf;Dysf;Dysf,0;0;0;0;0;0;0;0;0;0;0;0;0;-854,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,15,26903,ENSMUSG00000033788,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21343,cg02733021,-0.00000358,0.00000333,-1.076655837,0.282471203,loss,ns,-0.00000266,0.00000565,-0.470075733,0.63863143,neg,ns,-0.003567509,0.001656471,-2.153680784,0.032035946,neg,ns,1.494362447,-0.000011,0.000057,-0.192450321,0.84751549,neg,ns,0.899771183,Kcnc4,Kcnc4_Intron,3,107441493,107441542,107441493,107441494,50,-,CGGTGGGTGCCGTGGAAACTTGGGCTCCTGACAACTTGAGGGCTGCCACA,"Intron (Kcnc4-201/Kcnc4, intron 3 of 3)",3,107438303,107459552,21250,2,Kcnc4-201,18010,Kcnc4-201;Kcnc4-202,Kcnc4;Kcnc4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,12,99738,ENSMUSG00000027895,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19754,cg06617495,0.000000794,0.00000716,0.110933084,0.911741197,gain,ns,0.00000572,0.0000122,0.470072315,0.63863387,pos,ns,-0.00882229,0.003563056,-2.476045575,0.013818395,neg,ns,1.859542404,0.000393141,0.000122533,3.208443823,0.001474181,pos,ns,0.768737611,Gpat3,Gpat3_Intergenic_downstream,5,101032579,101032628,101032627,101032628,50,+,AGGATTCTATTGATCACACAAGTGCAGATTAAAGTGTTCAATGAAGCCCG,Distal Intergenic,5,100846417,100846850,434,1,Gpat3-205,186162,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,15,15,231510,ENSMUSG00000029314,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16170,cg17320921,0.000048,0.0000194,2.471545959,0.013990027,gain,ns,0.0000155,0.000033,0.470031154,0.638663243,pos,ns,0.049876631,0.009674165,5.15565217,0.000000451,pos,ns,6.345552616,-0.00158214,0.000332694,-4.7555447,0.00000304,neg,ns,0.446350052,Bnc2,Bnc2_Intron,4,84548723,84548772,84548723,84548724,50,+,CGGATCAATTACCAGACAAGCAAGTGATAGTGAAATCAATGAAAGATCAT,"Intron (Bnc2-201/Bnc2, intron 2 of 7)",4,84275095,84675034,399940,2,Bnc2-201,126262,Bnc2-201;Bnc2-202;Bnc2-214;Bnc2-215;Bnc2-206;Bnc2-211;Bnc2-217;Bnc2-207;Bnc2-203;Bnc2-209;Bnc2-221;Bnc2-204;Bnc2-220;Bnc2-210,Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,91,242509,ENSMUSG00000028487,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3449,cg23552337,-0.000143152,0.0000123,-11.67728389,2.35E-26,loss,yes,0.00000979,0.0000208,0.470000507,0.638685114,pos,ns,-0.004547427,0.006101459,-0.745301598,0.456654111,neg,ns,0.340412629,-0.000368352,0.000209829,-1.755488587,0.080163435,neg,ns,0.577410929,Bcl11a,Bcl11a_Exon,11,24087341,24087390,24087341,24087342,50,-,CGAGCTGCTCGTTTAAAAGACAAAACACAGTGTCTGTCAAGCAAGAATTA,"Exon (Bcl11a-205/Bcl11a, exon 2 of 2)",11,24078056,24173194,95139,1,Bcl11a-201,9285,Bcl11a-201;Bcl11a-203;Bcl11a-205;Bcl11a-202;Bcl11a-204,Bcl11a;Bcl11a;Bcl11a;Bcl11a;Bcl11a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,51,98,14025,ENSMUSG00000000861,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24902,cg19699446,-0.00000215,0.000000631,-3.401844452,0.000757119,loss,ns,0.000000504,0.00000107,0.469922115,0.63874106,pos,ns,0.00031906,0.000314295,1.015161893,0.31082031,pos,ns,0.50749061,-0.00000698,0.0000108,-0.64549305,0.519085193,neg,ns,0.019758123,Zbtb8a,Zbtb8a_fiveUTR,4,129377872,129377921,129377872,129377873,50,-,CGTGAGAGAAACAAAAGGTATTTGCTGACGTGGGCGTTGGACAGAAACGC,Promoter (<=1kb),4,129353628,129378116,24489,2,Zbtb8a-201,195,Gm12980-201;Zbtb8a-201,Gm12980;Zbtb8a,-1923;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,5,73680,ENSMUSG00000028807,conserved gene and region,4,129377047,129378041,995,*,995,129,0.712562814,1.024152624,0.129648241,6.09E-114,CpGisland,TRUE,NA,NRS
1996,cg18061232,0.0000406,0.0000135,3.000681007,0.002912432,gain,ns,-0.0000108,0.000023,-0.469824731,0.638810562,neg,ns,0.003513201,0.006731125,0.521933642,0.602089257,pos,ns,0.220339122,0.000140231,0.000231483,0.605792454,0.545095858,pos,ns,0.551526009,Gm5283,Gm5283_Intergenic_downstream,3,16938856,16938905,16938856,16938857,50,+,CGACATATTTCTGAATACTATTAGCATAGCAATCAGGGCTGTTCTCAGGT,Distal Intergenic,3,17230642,17230975,334,2,Gm5283-201,292070,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,10,383936,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5847,cg19079518,-5.75E-08,0.00000609,-0.009444299,0.992470726,loss,ns,-0.00000486,0.0000103,-0.4697863,0.638837991,neg,ns,-0.003115031,0.00303149,-1.027557552,0.304959096,neg,ns,0.515758409,-0.000022,0.000104253,-0.210928525,0.83308163,neg,ns,0.878230509,Prps1l1,Prps1l1_Intergenic_downstream,12,34999129,34999178,34999177,34999178,50,+,CTTTGAAGGTAATGTAACTGTGATAAGAGCCAATTAGTTTTGCACCATCG,Distal Intergenic,12,34984761,34986436,1676,1,Prps1l1-201,14368,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,75456,ENSMUSG00000092305,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23406,cg09825093,0.0000498,0.00000498,9.99282184,1.45E-20,gain,yes,-0.00000397,0.00000846,-0.469764037,0.63885388,neg,ns,0.007794696,0.002478808,3.14453466,0.001824693,pos,ns,2.738810193,-0.000190431,0.0000852,-2.233896108,0.026202837,neg,ns,0.067156898,Cdh13,Cdh13_Promoter,8,118283658,118283707,118283658,118283659,50,-,CGTCTTGTAAAGCCATTGGTCCTGGTCATCAGCCTCTACCCAATGCTTTC,Promoter (<=1kb),8,118283733,119324921,1041189,1,Cdh13-201,-75,Cdh13-201;Cdh13-205;Cdh13-204;Cdh13-203;Cdh13-206,Cdh13;Cdh13;Cdh13;Cdh13;Cdh13,0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,4,12554,ENSMUSG00000031841,conserved gene and region,8,118283569,118284088,520,*,520,36,0.607692308,0.75036075,0.069230769,7.96E-22,CpGisland,TRUE,NA,NRS
20446,cg15855685,-0.00000705,0.00000451,-1.561919989,0.119327088,loss,ns,0.0000036,0.00000766,0.46972683,0.638880436,pos,ns,0.000389301,0.00224499,0.173408685,0.862443373,pos,ns,0.064269411,-0.000126246,0.0000772,-1.635210258,0.103019923,neg,ns,0.565258409,Mapk10,Mapk10_Exon,5,103038634,103038683,103038682,103038683,50,+,TGCTCATGTTGTAATGTTTGGCAATATATGACACATCCACTTGTTTATCG,"Exon (Mapk10-212/Mapk10, exon 4 of 14)",5,102907948,103211334,303387,2,Mapk10-212,172651,Mapk10-212;Mapk10-201;Mapk10-204;Mapk10-203;Mapk10-213;Mapk10-209;Mapk10-202;Mapk10-206,Mapk10;Mapk10;Mapk10;Mapk10;Mapk10;Mapk10;Mapk10;Mapk10,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,3,26414,ENSMUSG00000046709,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8467,cg22272716,-0.0000076,0.00000487,-1.562091497,0.119286683,loss,ns,-0.00000388,0.00000827,-0.469714833,0.638888999,neg,ns,-0.000587158,0.002421378,-0.24248936,0.808561352,neg,ns,0.092287021,-0.0000131,0.0000833,-0.157467824,0.874978679,neg,ns,0.108678441,Gpr137c,Gpr137c_fiveUTR,14,45220207,45220256,45220255,45220256,50,+,GGCTGAGTTACCAGAGCCTCTGCCTCTTCCTCTGTCTCCTGTGGGCAGCG,Promoter (<=1kb),14,45219717,45224713,4997,1,Gpr137c-207,490,Gpr137c-207;Gpr137c-202;Gpr137c-205;Gpr137c-201;Gpr137c-206;Gpr137c-204;Txndc16-205;Txndc16-201;Txndc16-203;Txndc16-207;Txndc16-204;Txndc16-206;Txndc16-209;Txndc16-211;Txndc16-208;Txndc16-202,Gpr137c;Gpr137c;Gpr137c;Gpr137c;Gpr137c;Gpr137c;Txndc16;Txndc16;Txndc16;Txndc16;Txndc16;Txndc16;Txndc16;Txndc16;Txndc16;Txndc16,0;0;0;0;0;0;-782;-813;0;-817;-825;-810;-805;-811;-843;-817,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,6,70713,ENSMUSG00000049092,conserved gene but different region,14,45219666,45220343,678,*,678,91,0.743362832,0.97309318,0.134218289,3.65E-82,CpGisland,TRUE,NA,NRS
23606,cg05443576,-0.0000421,0.00000719,-5.852379145,1.23E-08,loss,yes,0.00000574,0.0000122,0.469666125,0.638923764,pos,ns,-0.002786065,0.003579922,-0.778247472,0.437016722,neg,ns,0.359501945,0.000207101,0.000123113,1.682197837,0.093537433,pos,ns,0.224996117,Dll4,Dll4_Intergenic_upstream,2,119314127,119314176,119314127,119314128,50,+,CGTTTGGATTTCCTGTTGTTCTGGCTTCCCAAGACCCTTAAAGGGCCAGC,Distal Intergenic,2,119325784,119335962,10179,1,Dll4-201,-11608,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,20,54485,ENSMUSG00000027314,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7143,cg21498575,-0.00000284,0.00000264,-1.07494412,0.283235683,loss,ns,0.00000211,0.00000449,0.469653097,0.638933063,pos,ns,0.000719744,0.001314556,0.547519015,0.584416181,pos,ns,0.233277768,-0.0000127,0.0000452,-0.279974615,0.779683706,neg,ns,0.939282656,Gria3,Gria3_Intron,X,41406559,41406608,41406607,41406608,50,+,AAATTGCTGTTGTACACCTTTACAGCCAACAAATGTGCTTGTGGATTACG,"Intron (Gria3-205/Gria3, intron 3 of 11)",20,41400854,41613099,212246,1,Gria3-205,5705,Gria3-205;Gria3-202;Gria3-201;Gria3-208;Gria3-206;Gria3-207;Gria3-209;Gria3-203,Gria3;Gria3;Gria3;Gria3;Gria3;Gria3;Gria3;Gria3,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,26,53623,ENSMUSG00000001986,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
266,cg15443969,0.000019,0.00000324,5.860428998,1.18E-08,gain,yes,-0.00000259,0.00000551,-0.46958831,0.638979307,neg,ns,0.008164922,0.001613544,5.060242515,0.000000719,pos,ns,6.143375155,-0.000145585,0.0000555,-2.623648026,0.009129759,neg,ns,0.062810234,Gm4828,Gm4828_Intergenic_downstream,17,4907498,4907547,4907546,4907547,50,+,TCTGCTGATCGAATTTCAGATCAGCCACAGGAGATGCAACTAACCTTCCG,Distal Intergenic,17,4880626,4881115,490,1,Gm4828-201,26872,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,3,224460,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
1376,cg08118694,-0.00000138,0.00000166,-0.828055242,0.408276239,loss,ns,0.00000133,0.00000282,0.469510647,0.639034743,pos,ns,0.0000684,0.000827095,0.082751464,0.93410257,pos,ns,0.029605433,-0.0000255,0.0000284,-0.896021574,0.370936484,neg,ns,0.947703657,Cadps,Cadps_threeUTR,14,12467093,12467142,12467141,12467142,50,+,CTCTAAGGCTGCATCCATGTCTACTGCAAAGAGTGACAGGAACGTCTCCG,3' UTR,14,12372563,12823053,450491,2,Cadps-210,355911,Cadps-210;Cadps-202;Cadps-203;Cadps-204;Cadps-201;Cadps-208;Cadps-206;Cadps-209,Cadps;Cadps;Cadps;Cadps;Cadps;Cadps;Cadps;Cadps,0;0;0;0;0;0;0;7385,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,8,34,27062,ENSMUSG00000054423,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19400,cg26648355,-0.00000721,0.00000204,-3.540284226,0.000461006,loss,ns,0.00000162,0.00000346,0.469403484,0.639111239,pos,ns,-0.000277226,0.001013545,-0.273521268,0.784634688,neg,ns,0.105332496,0.0000405,0.0000349,1.162244229,0.246030263,pos,ns,0.950804634,Foxp1,Foxp1_Intron,6,99233643,99233692,99233643,99233644,50,-,CGGTGCCAGGCAAAACTGATTAAATGGGGCTCTTAAGAATCAAAGCGTTA,"Intron (Foxp1-206/Foxp1, intron 2 of 17)",6,98925338,99266515,341178,2,Foxp1-206,32823,Foxp1-206;Foxp1-204;Foxp1-220;Foxp1-221;Foxp1-222;Foxp1-223;Foxp1-202;Foxp1-211;Foxp1-212;Foxp1-224,Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,87,108655,ENSMUSG00000030067,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17220,cg04590273,0.0000334,0.00000399,8.369643797,2.01E-15,gain,yes,0.00000318,0.00000678,0.469396129,0.639116489,pos,ns,0.000248168,0.001985517,0.124989183,0.900613126,pos,ns,0.045461728,0.0000069,0.0000683,0.101002363,0.919613877,pos,ns,0.894903659,Ppp6r2,Ppp6r2_Exon,15,89256666,89256715,89256714,89256715,50,-,TCCAAACACAGCCTGTGAGCTTCTGACTTGTGATGTGCCGCAGATCAGCG,"Exon (Ppp6r2-203/Ppp6r2, exon 6 of 8)",15,89211559,89263268,51710,1,Ppp6r2-203,45107,Ppp6r2-207;Ppp6r2-203;Ppp6r2-202;Ppp6r2-208;Ppp6r2-209;Ppp6r2-201;Ppp6r2-204,Ppp6r2;Ppp6r2;Ppp6r2;Ppp6r2;Ppp6r2;Ppp6r2;Ppp6r2,45113;0;0;0;0;0;-2231,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,71474,ENSMUSG00000036561,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16472,cg19258430,0.000121045,0.0000211,5.7355228,2.31E-08,gain,yes,0.0000168,0.0000359,0.469366694,0.639137501,pos,ns,0.032937855,0.01050392,3.135767777,0.001878372,pos,ns,2.72621839,-0.000783546,0.000361229,-2.169111965,0.030833981,neg,ns,0.510707171,Cntln,Cntln_Intron,4,85076072,85076121,85076120,85076121,50,+,GTAGCAACATTTATCCAGGAATTTGTGAAATGTCACTCGGATCATGTTCG,"Intron (Cntln-201/Cntln, intron 18 of 25)",4,84884309,85131921,247613,1,Cntln-201,191763,Cntln-201;Cntln-204,Cntln;Cntln,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,25,338349,ENSMUSG00000038070,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24843,cg03633658,-0.0000335,0.00000975,-3.441150378,0.00065871,loss,ns,-0.00000777,0.0000166,-0.469029807,0.639378011,neg,ns,-0.010494586,0.00485112,-2.163332558,0.031279515,neg,ns,1.504739992,-0.0000543,0.00016683,-0.325365297,0.745124105,neg,ns,0.829635181,Gm4410,Gm4410_Intron,3,128856701,128856750,128856701,128856702,50,-,CGAAGAGGTTTCACACATGCATTTTTAATCAGGATTATATTTCACAGAGA,"Intron (Gm43824-201/Gm43824-201, intron 4 of 4)",3,128839836,128840521,686,1,Gm4410-201,16914,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,13,100043393,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2545,cg24799830,0.0000283,0.00000675,4.19542199,0.0000356,gain,ns,0.00000538,0.0000115,0.469001965,0.63939789,pos,ns,-0.004762254,0.003358642,-1.417910573,0.157221269,neg,ns,0.803488703,0.000159525,0.000115503,1.381126418,0.168234851,pos,ns,0.858802199,Elmo1,Elmo1_Exon,13,20472929,20472978,20472929,20472930,50,-,CGATGATCTCTGAAGATGCTAAATAAATGAGCAGGAGTTTCCCTGAAATG,"Exon (Elmo1-203/Elmo1, exon 1 of 5)",13,20090619,20608353,517735,1,Elmo1-201,382310,Elmo1-201;Elmo1-203,Elmo1;Elmo1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,4,140580,ENSMUSG00000041112,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20578,cg27523547,-0.00000341,0.000000737,-4.620946769,0.00000561,loss,ns,0.000000587,0.00000125,0.468991318,0.639405492,pos,ns,-0.000288296,0.000366902,-0.785756982,0.432610033,neg,ns,0.363903412,0.00000664,0.0000126,0.525879184,0.599348135,pos,ns,0.979258031,Hipk1,Hipk1_Exon,3,103760571,103760620,103760619,103760620,50,-,GTGAAGGGACTCTTGATCTGACTCACTGTATCATACATGTGAACCCTCCG,"Exon (Hipk1-203/Hipk1, exon 7 of 16)",3,103739815,103791563,51749,2,Hipk1-203,30943,Hipk1-203;Hipk1-202;Hipk1-201;Hipk1-206;Hipk1-205,Hipk1;Hipk1;Hipk1;Hipk1;Hipk1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,11,15257,ENSMUSG00000008730,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14431,cg17784271,-0.0000362,0.00000599,-6.046661348,4.25E-09,loss,yes,0.00000478,0.0000102,0.468975541,0.639416756,pos,ns,-0.002002771,0.002983354,-0.671315122,0.502519715,neg,ns,0.298846896,-0.0000432,0.000102597,-0.421385942,0.673765309,neg,ns,0.875859304,Kit,Kit_Intron,5,75591844,75591893,75591844,75591845,50,+,CGATTTCTAGGTGTAAAAGCCAGGCAGATTTGCTCACTCAAGAAAATCTG,"Intron (Kit-204/Kit, intron 1 of 20)",5,75574916,75656722,81807,1,Kit-204,16928,Kit-204;Kit-201,Kit;Kit,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,16590,ENSMUSG00000005672,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13247,cg02671508,0.0000127,0.00000395,3.218681673,0.001424205,gain,ns,0.00000315,0.00000672,0.46896799,0.639422147,pos,ns,0.003542673,0.001968266,1.799895524,0.072849307,pos,ns,1.137574575,-0.0000906,0.0000677,-1.339008414,0.18154894,neg,ns,0.112118445,Nlgn2,Nlgn2_Promoter,11,69836833,69836882,69836833,69836834,50,-,CGGGGTCTGTGGGCCCATTCAAAGGATCATTCATGGACTGGAGAGAGGCA,Promoter (<=1kb),11,69823122,69837784,14663,2,Nlgn2-202,902,Nlgn2-201;Nlgn2-202;Nlgn2-203;Tmem256-203;Tmem256-201;Tmem256-205;Tmem256-204;Tmem256-202,Nlgn2;Nlgn2;Nlgn2;Tmem256;Tmem256;Tmem256;Tmem256;Tmem256,0;0;0;-1632;-1642;-1673;-1681;-1756,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,1,17,216856,ENSMUSG00000051790,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
16377,cg11753710,-0.0000246,0.00000421,-5.842366924,0.000000013,loss,yes,0.00000335,0.00000714,0.468758103,0.639572013,pos,ns,0.000329847,0.002093119,0.157586394,0.874885319,pos,ns,0.058048871,-0.0000275,0.000072,-0.382219112,0.702560743,neg,ns,0.913231808,Nfix,Nfix_Intron,8,84780143,84780192,84780143,84780144,50,-,CGCCCTCGCTCTGTTGAATCACGGTTCACTAGTCCTTTCAGTTTGCTGTG,"Intron (Nfix-201/Nfix, intron 1 of 8)",8,84708614,84800140,91527,2,Nfix-201,19948,Nfix-201;Nfix-202;Nfix-205,Nfix;Nfix;Nfix,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,49,18032,ENSMUSG00000001911,conserved gene and region,8,84779926,84780165,240,*,240,13,0.554166667,0.771895101,0.054166667,0.000000544,CpGisland,TRUE,U13,Hc-P
21890,cg19749175,0.0000116,0.00000297,3.913942736,0.000111665,gain,ns,-0.00000236,0.00000504,-0.468735485,0.639588164,neg,ns,0.003002108,0.001476507,2.033250796,0.042878791,pos,ns,1.367757468,0.0000345,0.0000508,0.678735617,0.497811777,pos,ns,0.058389979,Cdkn2c,Cdkn2c_Exon,4,109665069,109665118,109665117,109665118,50,+,TTGCAACAAACTAGTAAGTTGCTCTAGGTCCCCCCTGGCAGCTGCGGACG,Promoter (<=1kb),4,109660876,109665372,4497,2,Cdkn2c-201,254,Cdkn2c-201;Cdkn2c-202,Cdkn2c;Cdkn2c,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,13,12580,ENSMUSG00000028551,conserved gene and region,4,109665113,109665177,65,*,65,7,0.6,1.203703704,0.107692308,0.00000802,CpGisland,TRUE,NA,NRS
14591,cg13146508,-0.00000164,0.00000121,-1.350322293,0.177897605,loss,ns,-0.000000964,0.00000206,-0.468414422,0.639817444,neg,ns,-0.000416095,0.000603216,-0.689793828,0.490839892,neg,ns,0.309060148,0.0000201,0.0000207,0.968003587,0.333797176,pos,ns,0.973557744,Ttn,Ttn_Exon,2,76725473,76725522,76725473,76725474,50,+,CGCTCTACTGTGAAAGTTAGCTGTTTGGTGTGACCAGCTTCAACCCAGAA,"Exon (Ttn-201/Ttn, exon 167 of 191)",2,76703980,76982455,278476,2,Ttn-201,256933,Ttn-201;Ttn-203;Ttn-205;Ttn-204,Ttn;Ttn;Ttn;Ttn,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,12,22138,ENSMUSG00000051747,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U14,Hc-H
20184,cg13696713,-0.00000121,0.00000233,-0.519157457,0.604021378,loss,ns,-0.00000185,0.00000396,-0.468229555,0.639949478,neg,ns,-0.003018919,0.001158902,-2.604982804,0.009630857,neg,ns,2.016335059,0.0000647,0.0000399,1.624227697,0.105343524,pos,ns,0.972644022,Mapk10,Mapk10_threeUTR,5,102913158,102913207,102913158,102913159,50,-,CGCTGGGTTTCGCAGGCAGGCGGCTAGTCACCTGCAACAACCCAGGGGTC,3' UTR,5,102907948,103211334,303387,2,Mapk10-212,298127,Mapk10-212;Mapk10-201;Mapk10-204;Mapk10-203;Mapk10-213;Mapk10-209,Mapk10;Mapk10;Mapk10;Mapk10;Mapk10;Mapk10,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,3,26414,ENSMUSG00000046709,conserved gene and region,5,102913139,102913288,150,*,150,12,0.62,0.840336135,0.08,2.48E-08,CpGisland,TRUE,U15,NS
17917,cg10670873,0.000176197,0.000019,9.280914306,3.00E-18,gain,yes,-0.0000151,0.0000323,-0.468205887,0.639966383,neg,ns,0.024280493,0.00944896,2.569646984,0.010647425,pos,ns,1.972755419,-0.000625451,0.000324949,-1.924768045,0.055173311,neg,ns,0.133139249,Irx5,Irx5_Intergenic_downstream,8,92460638,92460687,92460638,92460639,50,+,CGCCGTGTAAGGTGAGCATTGTGGCTGCTCGCAGAACTGTTACAATCTGG,Distal Intergenic,8,92357749,92361456,3708,1,Irx5-201,102889,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,11,30,54352,ENSMUSG00000031737,conserved gene and region,8,92460297,92461099,803,*,803,104,0.684931507,1.115858954,0.129514321,6.30E-92,CpGisland,TRUE,U3,Pr-B
24153,cg00493843,0.0000123,0.0000114,1.073394706,0.283928889,gain,ns,0.00000909,0.0000194,0.468098327,0.64004321,pos,ns,-0.00804605,0.005690549,-1.413932066,0.158385309,neg,ns,0.800285103,0.000138143,0.000195698,0.70590205,0.480779191,pos,ns,0.591866473,Mycl,Mycl_Intron,4,122999479,122999528,122999527,122999528,50,-,CTGCCCACAGACCCCTCATTTACAATTCTGATGGGGCATGAAAGAGCCCG,"Intron (Mycl-202/Mycl, intron 2 of 2)",4,122995944,123002485,6542,1,Mycl-202,3535,Mycl-204;Mycl-202;Mycl-201;Mycl-203;Mycl-205,Mycl;Mycl;Mycl;Mycl;Mycl,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,4,16918,ENSMUSG00000028654,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20646,cg18099778,-0.00000571,0.00000987,-0.578828814,0.563125002,loss,ns,0.00000785,0.0000168,0.467988921,0.640121359,pos,ns,-0.009879845,0.004911838,-2.011435505,0.045144656,neg,ns,1.345393654,0.0000627,0.000168918,0.371269508,0.710690414,pos,ns,0.822345525,Pou4f1,Pou4f1_Intron,14,104297944,104297993,104297992,104297993,50,+,TTCAACATCCTCAGTATTTAAGAGGCAATCATAATGCATGCAAGTGGGCG,"Intron (D130079A08Rik-202/D130079A08Rik-202, intron 2 of 4)",14,104463973,104465365,1393,2,Pou4f1-202,167372,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,31,18996,ENSMUSG00000048349,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19802,cg13309513,0.0000141,0.00000428,3.29635239,0.001093189,gain,ns,0.00000341,0.00000728,0.467912082,0.640176248,pos,ns,0.006334096,0.002132352,2.970473414,0.003205793,pos,ns,2.494064572,-0.000159213,0.0000733,-2.171145304,0.030678539,neg,ns,0.090094202,Tubg2,Tubg2_fiveUTR,11,101156118,101156167,101156118,101156119,50,-,CGATGCCCCGGGAGATCATCACCCTGCAGCTGGGCCAGTGCGGCAACCAG,Promoter (<=1kb),11,101155907,101161787,5881,1,Tubg2-201,211,Tubg2-201,Tubg2,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,2,103768,ENSMUSG00000045007,conserved gene and region,11,101155949,101156193,245,*,245,27,0.702040816,0.902209493,0.110204082,4.39E-22,CpGisland,TRUE,U3,Pr-B
4559,cg21079330,-0.00000356,0.00000261,-1.363968761,0.173566899,loss,ns,-0.00000207,0.00000443,-0.467901506,0.640183803,neg,ns,-0.001801132,0.001297572,-1.388078121,0.166110007,neg,ns,0.779604203,0.000108019,0.0000446,2.420685526,0.016065557,pos,ns,0.941986921,Smo,Smo_Exon,6,29757295,29757344,29757343,29757344,50,+,ACCTTCAGCTGCCACTTCTACGACTTCTTCAACCAGGCTGAGTGGGAGCG,"Exon (Smo-201/Smo, exon 8 of 12)",6,29735694,29761365,25672,1,Smo-201,21601,Smo-201,Smo,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,319757,ENSMUSG00000001761,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13194,cg10865970,-0.0000161,0.00000294,-5.460626843,9.74E-08,loss,yes,-0.00000234,0.000005,-0.467790361,0.640263202,neg,ns,-0.003748122,0.001463977,-2.560232647,0.010933963,neg,ns,1.961222402,0.0000404,0.0000503,0.801567629,0.423417086,pos,ns,0.961059152,Tcf4,Tcf4_threeUTR,18,69687892,69687941,69687892,69687893,50,+,CGTTCTGTAGCAATAAATGTGCCATTTTTATAAACTGTTTCTGACACTTG,3' UTR,18,69344489,69689079,344591,1,Tcf4-207,343403,Tcf4-201;Tcf4-207;Tcf4-240;Tcf4-254;Tcf4-246;Tcf4-206;Tcf4-202;Tcf4-257;Tcf4-248;Tcf4-205;Tcf4-253;Tcf4-238;Tcf4-249;Tcf4-250;Tcf4-226;Tcf4-230;Tcf4-234;Tcf4-258;Tcf4-252;Tcf4-243;Tcf4-204;Tcf4-203;Tcf4-251;Tcf4-214;Tcf4-211,Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;5512,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,66,21413,ENSMUSG00000053477,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27865,cg10808803,-0.0000161,0.00000378,-4.26423459,0.0000267,loss,ns,0.000003,0.00000642,0.467680069,0.640341995,pos,ns,-0.0000876,0.001880985,-0.046583091,0.962875504,neg,ns,0.016429862,-0.000151611,0.0000647,-2.34376673,0.019721537,neg,ns,0.914638906,Ush2a,Ush2a_Intron,1,188806207,188806256,188806207,188806208,50,+,CGTTCTGGCCATTAAGTGAAATTACTATTTAAATTAATGGCACTGTCACA,"Intron (Ush2a-201/Ush2a, intron 49 of 70)",1,188263034,188965041,702008,1,Ush2a-201,543173,Ush2a-201,Ush2a,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,33,36,22283,ENSMUSG00000026609,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26747,cg06474092,-0.00000485,0.00000392,-1.238989442,0.216286673,loss,ns,0.00000311,0.00000666,0.467599023,0.640399898,pos,ns,0.002713251,0.001949873,1.391501922,0.165070979,pos,ns,0.782329274,-0.000110343,0.0000671,-1.645535193,0.100872981,neg,ns,0.910797945,Phf13,Phf13_Exon,4,151991681,151991730,151991729,151991730,50,-,ACAGGTGAATCCAGGTGTGGCACTCATTACACTCGATCATGGGGCGGCCG,"Exon (Phf13-201/Phf13, exon 4 of 4)",4,151989633,151996258,6626,2,Phf13-201,4528,Phf13-201;Thap3-201;Thap3-202;Thap3-203,Phf13;Thap3;Thap3;Thap3,0;-2684;-2711;-2701,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,230936,ENSMUSG00000047777,conserved gene and region,4,151991572,151991760,189,*,189,13,0.566137566,0.875623664,0.068783069,0.000000034,CpGisland,TRUE,U10,Tr-S
11287,cg02278365,0.0000289,0.0000069,4.183221221,0.0000375,gain,ns,0.00000548,0.0000117,0.467560223,0.640427619,pos,ns,0.002310221,0.003433266,0.672893121,0.501516576,pos,ns,0.299714709,-0.000186805,0.00011807,-1.582159978,0.114632728,neg,ns,0.801228921,Gria1,Gria1_Exon,11,57327437,57327486,57327485,57327486,50,+,GAAAAGGGTTTTTGTTTGATCCCACAGCAATCCATCAACGAAGCCATACG,"Exon (Gria1-201/Gria1, exon 16 of 16)",11,57011810,57330244,318435,1,Gria1-201,315627,Gria1-201;Gria1-202;Gria1-204,Gria1;Gria1;Gria1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,13,14799,ENSMUSG00000020524,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9509,cg04673724,-0.00000353,0.00000272,-1.299048515,0.194892633,loss,ns,-0.00000216,0.00000462,-0.467557883,0.640429291,neg,ns,0.000875976,0.001353066,0.64740087,0.517851659,pos,ns,0.285794629,-0.0000261,0.0000465,-0.560316275,0.575668423,neg,ns,0.906960144,Usp28,Usp28_Exon,9,49033595,49033644,49033643,49033644,50,+,ATGCAAGGGGTCATCCTGGCCATAGCTAAAGCCCGTCAGACCTTTGACCG,"Exon (Usp28-208/Usp28, exon 10 of 14)",9,48985414,49042510,57097,1,Usp28-203,48181,Usp28-203;Usp28-201;Usp28-208;Usp28-204;Usp28-202;Usp28-210,Usp28;Usp28;Usp28;Usp28;Usp28;Usp28,0;0;0;1381;0;-4032,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,235323,ENSMUSG00000032267,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8728,cg21714079,0.0000044,0.00000268,1.645447195,0.100891127,gain,ns,-0.00000213,0.00000455,-0.467543747,0.640439391,neg,ns,0.001335473,0.001331655,1.002866919,0.316707228,pos,ns,0.499342024,0.0000951,0.0000458,2.077091455,0.038616337,pos,ns,0.930146706,Fbxw4,Fbxw4_Intron,19,45628936,45628985,45628984,45628985,50,-,GTCCTGCTATATCAGCCGTCAAATTGAAGAATTAATGACGTGGCTAATCG,"Intron (Fbxw4-206/Fbxw4, intron 1 of 4)",19,45578254,45631138,52885,2,Fbxw4-206,2153,Fbxw4-206;Fbxw4-201;Fbxw4-208;Fbxw4-202,Fbxw4;Fbxw4;Fbxw4;Fbxw4,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,14,30838,ENSMUSG00000040913,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16488,cg05086458,0.0000255,0.0000123,2.069856345,0.039293794,gain,ns,0.00000977,0.0000209,0.467441743,0.640512271,pos,ns,-0.003429456,0.006121843,-0.560199901,0.575747691,neg,ns,0.239767795,-0.00014966,0.00021053,-0.710873657,0.477697026,neg,ns,0.731166853,Spr-ps1,Spr-ps1_Intergenic_downstream,6,85165561,85165610,85165561,85165562,50,+,CGTGGTAGATTTTAATTAGTCTTCCTACAGATGGCCAATTAACATTCATT,Distal Intergenic,6,85155208,85156223,1016,1,Spr-ps1-202,10353,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,665089,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7467,cg21447090,0.000066,0.00000885,7.461198601,8.70E-13,gain,yes,0.00000703,0.000015,0.467440843,0.640512914,pos,ns,0.00000885,0.004405468,0.002009722,0.998397767,pos,ns,0.000696399,0.000225555,0.000151504,1.488778603,0.137562256,pos,ns,0.325442784,Pou3f3,Pou3f3_threeUTR,1,42700171,42700220,42700171,42700172,50,+,CGTAAGAGCTGATCGAGAAAATAAATTTGTTAGAATGAAATAGTCTGTGT,3' UTR,1,42694925,42703176,8252,1,Pou3f3-202,5246,Pou3f3-202;Pou3f3-201,Pou3f3;Pou3f3,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,5,37,18993,ENSMUSG00000045515,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
22371,cg25856948,-0.000000101,0.00000761,-0.013284398,0.989409441,loss,ns,0.00000604,0.0000129,0.467348543,0.640578865,pos,ns,-0.006327422,0.003787272,-1.670706888,0.095788816,neg,ns,1.018685197,0.000201634,0.000130244,1.548126786,0.122612022,pos,ns,0.709416678,Atp2b2,Atp2b2_threeUTR,6,113748543,113748592,113748543,113748544,50,+,CGACGTCTCCAGGCTGTGGATGGGGCTCCCTGGACTTGAAGAGGTAGCTG,3' UTR,6,113743831,114042026,298196,2,Atp2b2-203,293434,Atp2b2-203;Atp2b2-201;Atp2b2-206;Atp2b2-208;Atp2b2-202,Atp2b2;Atp2b2;Atp2b2;Atp2b2;Atp2b2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,8,11941,ENSMUSG00000030302,conserved gene and region,6,113748431,113748547,117,*,117,10,0.700854701,0.75,0.085470086,0.000000285,CpGisland,TRUE,NA,NRS
6719,cg09735014,-0.00000358,0.00000119,-3.018672286,0.002749623,loss,ns,0.00000094,0.00000201,0.46710429,0.640753403,pos,ns,0.000298643,0.000589837,0.5063151,0.612995352,pos,ns,0.212542819,-0.00000391,0.0000203,-0.19290672,0.847158342,neg,ns,0.036441727,Pcdh1,Pcdh1_threeUTR,18,38185943,38185992,38185943,38185944,50,-,CGGGAATAATTACACGGGTCTTTCATTGACAGCTCAGCAAACAAACCGGA,3' UTR,18,38185914,38212053,26140,2,Pcdh1-203,26061,Pcdh1-203;Pcdh1-204,Pcdh1;Pcdh1,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,10,17,75599,ENSMUSG00000051375,conserved gene but different region,18,38185887,38186045,159,*,159,14,0.566037736,1.156363636,0.088050315,3.20E-10,CpGisland,TRUE,U1,Pr-A
19103,cg22821335,-0.0000367,0.00000891,-4.121548487,0.0000484,loss,ns,0.00000707,0.0000151,0.467086462,0.640766143,pos,ns,-0.008776589,0.004434735,-1.979056135,0.04869428,neg,ns,1.312522053,0.000253104,0.00015251,1.659589544,0.098008288,pos,ns,0.833785473,Gm765,Gm765_Intergenic_upstream,6,98385850,98385899,98385898,98385899,50,-,TCACGTTTCAAACTGCACCTCAATATAGTGCCTTTTTCAACATGAACTCG,Distal Intergenic,6,98235708,98342754,107047,2,Gm765-201,-43145,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,10,330390,ENSMUSG00000090667,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
641,cg02057025,-0.000012,0.0000074,-1.619958472,0.106257975,loss,ns,0.00000587,0.0000126,0.467016166,0.640816379,pos,ns,-0.002092694,0.003680625,-0.568570391,0.570059368,neg,ns,0.244079913,-0.0000179,0.000126576,-0.141424896,0.887626147,neg,ns,0.854996915,Rbfox1,Rbfox1_Exon,16,7409748,7409797,7409796,7409797,50,-,CTCGTTCTTTCTTCATTGCAGGCTAGTATATACCGAGGGGGATACAACCG,"Exon (Rbfox1-201/Rbfox1, exon 15 of 15)",16,6349138,7411526,1062389,1,Rbfox1-201,1060610,Rbfox1-201;Rbfox1-202;Rbfox1-203;Rbfox1-208;Rbfox1-207;Rbfox1-206,Rbfox1;Rbfox1;Rbfox1;Rbfox1;Rbfox1;Rbfox1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,35,268859,ENSMUSG00000008658,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19748,cg01641343,0.0000276,0.00000925,2.98820686,0.003030455,gain,ns,-0.00000734,0.0000157,-0.466889103,0.640907187,neg,ns,-0.006935989,0.004603762,-1.506591483,0.132933707,neg,ns,0.876364883,0.000118319,0.000158323,0.747327607,0.455432306,pos,ns,0.798822818,Scn8a,Scn8a_Exon,15,101024253,101024302,101024301,101024302,50,+,CTGTGTAGGTCTCTTTAGTCAGCCTTATAGCTAATGCCCTGGGCTACTCG,"Exon (Scn8a-201/Scn8a, exon 21 of 27)",15,100870683,101045929,175247,1,Scn8a-201,153570,Scn8a-201;Scn8a-204;Scn8a-213;Scn8a-203;Scn8a-205;Scn8a-208;Scn8a-209,Scn8a;Scn8a;Scn8a;Scn8a;Scn8a;Scn8a;Scn8a,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,18,24,20273,ENSMUSG00000023033,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
16310,cg11861092,-0.0000192,0.00000378,-5.089795553,0.000000623,loss,yes,0.00000299,0.00000641,0.466872772,0.640918859,pos,ns,-0.0000873,0.00187928,-0.046447041,0.962983851,neg,ns,0.016380996,-0.0000832,0.0000646,-1.2874482,0.19889846,neg,ns,0.886091224,Nfix,Nfix_Exon,8,84727914,84727963,84727962,84727963,50,+,GTGGTTTGATGTCCGCATCTCCTTGCTGGTTTGAACTATCTGATTGTCCG,"Exon (Nfix-204/Nfix, exon 3 of 11)",8,84704712,84773396,68685,2,Nfix-204,45433,G430095P16Rik-201;Nfix-204;Nfix-201;Nfix-202;Nfix-203;Nfix-205,G430095P16Rik;Nfix;Nfix;Nfix;Nfix;Nfix,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,20,49,18032,ENSMUSG00000001911,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8156,cg18003644,0.0000136,0.0000136,0.994032961,0.320982077,gain,ns,-0.0000108,0.0000232,-0.466856019,0.640930833,neg,ns,0.003997366,0.00678761,0.588921084,0.556343096,pos,ns,0.254657297,-0.000230002,0.000233425,-0.985334343,0.325228275,neg,ns,0.589758998,Pax2,Pax2_Intron,19,44802766,44802815,44802766,44802767,50,+,CGGTGTGGCAGTGTCAGCTCTCGCTGTTGTTCGACAGTGTAAAATTAAAT,"Intron (Pax2-203/Pax2, intron 5 of 9)",19,44756045,44837851,81807,1,Pax2-203,46721,Pax2-203;Pax2-201;Pax2-202,Pax2;Pax2;Pax2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,35,166,18504,ENSMUSG00000004231,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4278,cg20504623,-0.000144113,0.00000715,-20.1419597,2.86E-58,loss,yes,-0.00000567,0.0000122,-0.46674048,0.641013411,neg,ns,0.013458287,0.00356106,3.779292927,0.000188602,pos,ns,3.724453524,-0.00108321,0.000122465,-8.845088997,7.07E-17,neg,yes,0.567560149,Scube3,Scube3_Exon,17,28166015,28166064,28166015,28166016,50,+,CGGCCAGACGGAGCAGTGTGTGCCATGCCCAGCGGGCACCTTCCAGGAGA,"Exon (Scube3-201/Scube3, exon 16 of 22)",17,28142141,28174854,32714,1,Scube3-201,23874,Scube3-201;Scube3-207;Scube3-202;Scube3-203;Scube3-206;Scube3-205;Scube3-204,Scube3;Scube3;Scube3;Scube3;Scube3;Scube3;Scube3,0;0;0;0;7141;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,7,268935,ENSMUSG00000038677,conserved gene and region,17,28165967,28166085,119,*,119,9,0.672268908,0.669793621,0.075630252,0.00000392,CpGisland,TRUE,U11,Tr-P
16519,cg04399083,0.0000129,0.00000315,4.104397092,0.0000519,gain,ns,-0.00000249,0.00000534,-0.466709832,0.641035316,neg,ns,0.003085493,0.001565354,1.971115482,0.049599878,pos,ns,1.304519388,-0.000135983,0.0000538,-2.526048047,0.012033184,neg,ns,0.071016192,Tent5a,Tent5a_Exon,9,85326375,85326424,85326375,85326376,50,-,CGCAGAAGATGAGGTCCAGGTCCTTGTAGCCCAGGCCGCTGTCCTGGTGC,Promoter (<=1kb),9,85320439,85327124,6686,2,Tent5a-201,700,Tent5a-201;Tent5a-202,Tent5a;Tent5a,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,6,212943,ENSMUSG00000032265,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
5810,cg07021951,-0.00000636,0.00000948,-0.670313297,0.503157131,loss,ns,0.00000752,0.0000161,0.466698394,0.641043492,pos,ns,-0.000813948,0.004719567,-0.17246238,0.863186574,neg,ns,0.063895323,-0.000235083,0.000162306,-1.448401125,0.148515573,neg,ns,0.764458856,Kirrel3,Kirrel3_Intron,9,34850047,34850096,34850095,34850096,50,-,AAGATTAAACTCTTGATTTAAGTAGCTACATCTTAGCAGTAATTAACACG,"Intron (Kirrel3-202/Kirrel3, intron 2 of 16)",9,34486126,35035280,549155,1,Kirrel3-202,363921,Kirrel3-202;Kirrel3-206;Kirrel3-209;Kirrel3-201;Kirrel3-208;Kirrel3-205,Kirrel3;Kirrel3;Kirrel3;Kirrel3;Kirrel3;Kirrel3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,21,67703,ENSMUSG00000032036,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3558,cg14383179,-0.000000417,0.000000978,-0.426503821,0.670036783,loss,ns,-0.000000776,0.00000166,-0.46665703,0.641073057,neg,ns,-0.000264953,0.000486939,-0.544119437,0.586750418,neg,ns,0.231546592,-0.000014,0.0000167,-0.838036583,0.402655825,neg,ns,0.974050195,Agap3,Agap3_Intron,5,24497783,24497832,24497831,24497832,50,+,TTAGGCAGCTCCCTGATTGTTTCTAATTCTGCTATTAATTGTGAGGAGCG,"Intron (Agap3-201/Agap3, intron 12 of 17)",5,24452177,24502047,49871,1,Agap3-201,45606,Agap3-201;Agap3-202;Gbx1-201,Agap3;Agap3;Gbx1,0;0;29370,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,13,213990,ENSMUSG00000023353,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22378,cg03537184,-0.0000056,0.0000072,-0.777835613,0.437259156,loss,ns,-0.00000571,0.0000122,-0.466477989,0.641201036,neg,ns,0.005979084,0.003583453,1.668525681,0.096221055,pos,ns,1.016729884,-0.0000717,0.000123235,-0.581746814,0.561160023,neg,ns,0.925323178,Clasp2,Clasp2_Exon,9,113812739,113812788,113812739,113812740,50,-,CGACTGATTTGCAAACGGATCTGTGATTGTAAGTTGCAGAATCTGGGTAT,"Exon (Clasp2-208/Clasp2, exon 1 of 12)",9,113741473,113918797,177325,1,Clasp2-204,71266,Clasp2-204;Clasp2-211;Clasp2-205;Clasp2-206;Clasp2-208;Clasp2-201;Clasp2-203;Clasp2-207;Clasp2-209;Clasp2-202,Clasp2;Clasp2;Clasp2;Clasp2;Clasp2;Clasp2;Clasp2;Clasp2;Clasp2;Clasp2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,3,76499,ENSMUSG00000033392,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20621,cg03565531,-0.0000699,0.0000137,-5.097713376,0.000000599,loss,yes,0.0000109,0.0000233,0.466393667,0.641261312,pos,ns,-0.010737929,0.00682667,-1.572938109,0.116753171,neg,ns,0.932731316,-0.000044,0.000234769,-0.187373108,0.851490683,neg,ns,0.661018156,Gm21054,Gm21054_Promoter,6,103966787,103966836,103966835,103966836,50,+,AAGCTATTAAGCTAGCAATAAAAATGCAATATTTTAACCCAATTTACTCG,Promoter (2-3kb),6,103964260,103964639,380,2,Gm21054-201,-2148,Gm21054-201,Gm21054,-2148,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13733,cg01656588,-0.0000188,0.00000429,-4.39281774,0.0000154,loss,ns,0.0000034,0.00000729,0.46631625,0.641316655,pos,ns,-0.001900191,0.002134477,-0.890237145,0.374028919,neg,ns,0.427094818,-0.0000486,0.0000734,-0.66223343,0.508313637,neg,ns,0.908023446,Gm4052,Gm4052_Intergenic_upstream,13,72298624,72298673,72298672,72298673,50,-,AAAAGTTTAATTAAGCAATTATGAAGCCAATAATAGAGTTGTCTGGCCCG,Distal Intergenic,13,72350221,72350671,451,1,Gm4052-201,-51597,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,16,16,100042828,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8998,cg00553911,-0.00000289,0.00000115,-2.513452194,0.012462384,loss,ns,0.000000912,0.00000196,0.466078817,0.641486402,pos,ns,0.000900634,0.000573027,1.571714642,0.117036801,pos,ns,0.931677556,-0.000052,0.0000197,-2.636784113,0.008791254,neg,ns,0.030648246,Trim8,Trim8_Exon,19,46502773,46502822,46502773,46502774,50,+,CGAGGCGCCCTGCTGCCAGTCCCACGTGCAGACGCACCTGCAGCAGCCCT,"Exon (Trim8-201/Trim8, exon 1 of 6)",19,46501702,46516848,15147,1,Trim8-201,1071,Trim8-201,Trim8,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,15,21,93679,ENSMUSG00000025034,conserved gene and region,19,46502503,46503142,640,*,640,53,0.6359375,0.821705426,0.0828125,6.38E-36,CpGisland,TRUE,U1,Pr-A
24131,cg19625557,-0.000015,0.0000086,-1.747986638,0.081456346,loss,ns,0.00000681,0.0000146,0.466063882,0.64149708,pos,ns,-0.002337221,0.004281699,-0.545863083,0.585552644,neg,ns,0.232434054,-0.000149734,0.000147247,-1.016891307,0.309998113,neg,ns,0.832748055,Ggact,Ggact_Intron,14,122820792,122820841,122820792,122820793,50,+,CGAAAACAATTTTGAACTCCATCAGTTTAACTCAGGAGGGTAAACTTAAT,"Intron (Pcca-201/Pcca, intron 21 of 23)",14,122816223,122913120,96898,2,Ggact-202,92279,Ggact-202;Pcca-201;Pcca-213;Pcca-210;Pcca-203,Ggact;Pcca;Pcca;Pcca;Pcca,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,3,223267,ENSMUSG00000041625,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6314,cg24039358,-0.00000146,0.00000117,-1.250266132,0.212145289,loss,ns,0.000000925,0.00000198,0.465958539,0.641572399,pos,ns,-0.000820251,0.000581537,-1.410488477,0.159398126,neg,ns,0.797516788,0.00000882,0.00002,0.44119066,0.659382521,pos,ns,0.972653933,Fez1,Fez1_Exon,9,36843859,36843908,36843859,36843860,50,-,CGAAATAATCAGCTTCAAGTCCATGGAGGACCTCGTAAATGAATTTGATG,"Exon (Fez1-207/Fez1, exon 2 of 3)",9,36821864,36850405,28542,1,Fez1-207,21995,Fez1-207;Fez1-201;Fez1-209;Fez1-210;Fez1-204;Fez1-208;Fez1-203,Fez1;Fez1;Fez1;Fez1;Fez1;Fez1;Fez1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,235180,ENSMUSG00000032118,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25027,cg04308306,0.00000745,0.0000035,2.126457189,0.034254965,gain,ns,0.00000277,0.00000595,0.465948098,0.641579864,pos,ns,0.003675479,0.001744278,2.107163849,0.035906383,pos,ns,1.444828343,-0.000115499,0.00006,-1.925447161,0.055088007,neg,ns,0.083578862,Fgfr2,Fgfr2_Intron,7,131644215,131644264,131644215,131644216,50,-,CGGTAATTAAGGACCTTTGTCAATAAGACGGAATGGATGGCCACACTTGG,"Intron (Fgfr2-217/Fgfr2, intron 2 of 6)",7,130162451,133123350,2960900,2,Fgfr2-217,1479086,Fgfr2-217,Fgfr2,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,58,79,14183,ENSMUSG00000030849,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
8939,cg21993706.1,-0.00000513,0.00000326,-1.572821339,0.116780218,loss,ns,-0.00000258,0.00000554,-0.465913946,0.641604283,neg,ns,-0.002661984,0.001623457,-1.639701494,0.102081581,neg,ns,0.991052613,-0.0000182,0.0000558,-0.326876027,0.743982249,neg,ns,0.930640409,Cntnap2,Cntnap2_Exon,6,46347079,46347128,46347127,46347128,50,+,TCTCTGACAGATGTGTGCCCAATCACTGTGAGCATGGTGGAAAGTGCTCG,"Exon (Cntnap2-202/Cntnap2, exon 11 of 24)",6,45060061,47304213,2244153,1,Cntnap2-202,1287018,Cntnap2-202;Cntnap2-204,Cntnap2;Cntnap2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,66797,ENSMUSG00000039419,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2987,cg12892262,-0.000000252,0.0000014,-0.180051595,0.857229702,loss,ns,-0.00000111,0.00000238,-0.465833789,0.641661598,neg,ns,-0.000331894,0.000696236,-0.476697969,0.63391305,neg,ns,0.197970307,-0.0000073,0.0000239,-0.305054066,0.760529686,neg,ns,0.96653716,Lrmda,Lrmda_Intron,14,22257430,22257479,22257430,22257431,50,-,CGTTGATAATTATATATCAGAATCTAATTTTTAGCACAGAAAATGTGTTA,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,237718,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206,Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16989,cg03264110,-0.00000683,0.00000267,-2.559516128,0.010956051,loss,ns,-0.00000211,0.00000454,-0.4658278,0.641665881,neg,ns,-0.001979203,0.001328947,-1.489301944,0.137424512,neg,ns,0.861935795,0.0000531,0.0000457,1.160941574,0.246558849,pos,ns,0.940038361,Zfp423,Zfp423_Intron,8,87750187,87750236,87750235,87750236,50,-,CATAAAATATACAACTGCAAATTATCCAGGAAATAGCTATGTTCTTTACG,"Intron (Zfp423-203/Zfp423, intron 3 of 5)",8,87661810,87804439,142630,2,Zfp423-203,54203,Zfp423-203;Zfp423-202;Zfp423-201,Zfp423;Zfp423;Zfp423,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,42,53,94187,ENSMUSG00000045333,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1632,cg23916454,-0.0000449,0.00000883,-5.087510032,0.00000063,loss,yes,0.00000699,0.000015,0.465768266,0.64170845,pos,ns,0.003072211,0.004396431,0.698796621,0.485203057,pos,ns,0.314076471,-0.000313577,0.000151193,-2.07401764,0.038902925,neg,ns,0.73827793,Zfp521,Zfp521_Intron,18,13900687,13900736,13900687,13900688,50,-,CGTACTGTGAGCTTCTTTGGTGAAGTTGTCTTCTATTGCTAAATGACAAA,"Intron (Zfp521-201/Zfp521, intron 3 of 7)",18,13687013,13972787,285775,2,Zfp521-201,72051,Zfp521-201;Zfp521-204;Zfp521-203;Zfp521-202,Zfp521;Zfp521;Zfp521;Zfp521,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,81,225207,ENSMUSG00000024420,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23568,cg05987642,-0.0000089,0.00000481,-1.847598282,0.065613038,loss,ns,0.00000381,0.00000818,0.465713786,0.641747408,pos,ns,-0.00107811,0.002396461,-0.449875852,0.653114373,neg,ns,0.185010759,0.0000656,0.0000824,0.795699213,0.426815737,pos,ns,0.742509303,Ctdspl,Ctdspl_Exon,9,119031830,119031879,119031878,119031879,50,+,GCTGTGCAGGTCCCAATGGGCCTATTCTTGGTTACTTGCACGGGGACGCG,"Exon (Mir26a-1-201/Mir26a-1-201, exon 1 of 1)",9,118926453,119043998,117546,1,Ctdspl-201,105377,Ctdspl-201;Ctdspl-202;Ctdspl-204;Ctdspl-203,Ctdspl;Ctdspl;Ctdspl;Ctdspl,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,7,69274,ENSMUSG00000047409,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1487,cg17232903,-0.0000661,0.00000952,-6.940061975,2.30E-11,loss,yes,-0.00000753,0.0000162,-0.465672604,0.641776857,neg,ns,-0.013632915,0.004737602,-2.877598493,0.004285343,neg,ns,2.368014367,0.000117296,0.000162926,0.719934102,0.472108008,pos,ns,0.852181228,Mrtfb,Mrtfb_Intergenic_upstream,16,13233115,13233164,13233163,13233164,50,+,CACTGGCTTTGTTTATGGGACAGATTGTTTTTGCTAAGTTGTTTGCTCCG,Distal Intergenic,16,13256481,13415063,158583,1,Mrtfb-201,-23317,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,5,239719,ENSMUSG00000009569,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1174,cg23744754,0.0000705,0.0000117,6.026502098,4.75E-09,gain,yes,-0.00000925,0.0000199,-0.46566596,0.641781608,neg,ns,0.019980027,0.005818303,3.433995869,0.000675682,pos,ns,3.170257655,-0.000572206,0.000200091,-2.859727474,0.004527693,neg,ns,0.247030501,Tex29,Tex29_Intron,8,11990369,11990418,11990417,11990418,50,+,TGAGTGACTCTTATCAATCTATTGTCCATCATCATCTGATAATCAGACCG,"Intron (B020031H02Rik-201/B020031H02Rik-201, intron 1 of 2)",8,11842061,11855757,13697,1,Tex29-202,148308,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,4,75528,ENSMUSG00000031512,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
2422,cg10632395,0.0000347,0.00000883,3.924931566,0.00010692,gain,ns,0.00000699,0.000015,0.46555951,0.641857733,pos,ns,0.009556906,0.004396482,2.173762143,0.030479485,pos,ns,1.515992382,-0.000145981,0.000151195,-0.965517592,0.335038229,neg,ns,0.179140033,Olig3,Olig3_Promoter,10,19356221,19356270,19356269,19356270,50,-,CCCCACAATGAATATGAATAGGAATCCTTGCTAAATGGGACAGCAAAGCG,Promoter (<=1kb),10,19356533,19358604,2072,1,Olig3-201,-312,Olig3-201,Olig3,-263,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,9,94222,ENSMUSG00000045591,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
13022,cg13354921,0.0000209,0.00000299,6.970438302,1.91E-11,gain,yes,-0.00000237,0.00000508,-0.465483604,0.641912017,neg,ns,0.005139979,0.001489332,3.451197477,0.000635547,pos,ns,3.196852539,-0.000169775,0.0000512,-3.314747458,0.001026048,neg,ns,0.047873352,Rhobtb1,Rhobtb1_fiveUTR,10,69212633,69212682,69212681,69212682,50,-,TAGTCAGCAGCTGGGCTCGGTTTTGAAACAAAAGCCAATGTCCTCCCTCG,Promoter (<=1kb),10,69212634,69291791,79158,1,Rhobtb1-201,0,A930033H14Rik-201;Rhobtb1-209;Rhobtb1-205;Rhobtb1-201;Rhobtb1-207;Rhobtb1-210;Rhobtb1-203;Rhobtb1-206;Rhobtb1-202;Rhobtb1-211,A930033H14Rik;Rhobtb1;Rhobtb1;Rhobtb1;Rhobtb1;Rhobtb1;Rhobtb1;Rhobtb1;Rhobtb1;Rhobtb1,0;0;0;0;0;0;-402;-489;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,3,69288,ENSMUSG00000019944,conserved gene but different region,10,69212404,69212734,331,*,331,19,0.682779456,0.493913453,0.057401813,2.26E-10,CpGisland,TRUE,NA,NRS
1661,cg06989803,0.00000072,0.00000189,0.381409936,0.703160371,gain,ns,0.00000149,0.00000321,0.46540615,0.64196741,pos,ns,0.002222498,0.000939576,2.365428162,0.018624524,pos,ns,1.72991482,-0.0000908,0.0000323,-2.80937634,0.005279091,neg,ns,0.951700327,Psmd6,Psmd6_Exon,14,14116174,14116223,14116174,14116175,50,+,CGGCATTCATAGAGTGAAAACAGATACTGCCGAACTGCTGGAAGACTGTG,"Exon (Psmd6-201/Psmd6, exon 5 of 8)",14,14112174,14120984,8811,2,Psmd6-201,4761,Psmd6-201;Psmd6-204;Psmd6-206;Psmd6-202;Psmd6-205;Psmd6-203,Psmd6;Psmd6;Psmd6;Psmd6;Psmd6;Psmd6,0;0;0;0;4413;4710,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,66413,ENSMUSG00000021737,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6112,cg18187077,0.0000118,0.00000513,2.307142128,0.021705626,gain,ns,0.00000406,0.00000872,0.465402089,0.641970314,pos,ns,-0.00627233,0.002553242,-2.456614381,0.014573201,neg,ns,1.836445036,0.000229592,0.0000878,2.614776656,0.009364934,pos,ns,0.906931803,Lhx6,Lhx6_Exon,2,36087427,36087476,36087427,36087428,50,+,CGGTGTAAGGCAGCCGGCAGTGCACCTGCCCGCACTGTACCTGACCTGTG,"Exon (Lhx6-202/Lhx6, exon 8 of 9)",2,36081953,36104060,22108,2,Lhx6-202,16584,Lhx6-202;Lhx6-204;Lhx6-201;Lhx6-205;Lhx6-203;Lhx6-206;Lhx6-208,Lhx6;Lhx6;Lhx6;Lhx6;Lhx6;Lhx6;Lhx6,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,9,16874,ENSMUSG00000026890,conserved gene and region,2,36087316,36087480,165,*,165,10,0.636363636,0.598693759,0.060606061,0.00000645,CpGisland,TRUE,NA,NRS
638,cg26012912,0.0000133,0.0000056,2.379613506,0.017935534,gain,ns,0.00000443,0.00000952,0.465318997,0.642029742,pos,ns,0.001318125,0.002788054,0.472776012,0.636705677,pos,ns,0.196061278,-0.0000228,0.0000959,-0.237961908,0.812067844,neg,ns,0.716092145,Rbfox1,Rbfox1_Intron,16,7391955,7392004,7392003,7392004,50,+,GAGCAGTATTGTGAATTTTATCTTCTCTTCCAGAAATCAGTTCGTCTTCG,"Intron (Rbfox1-201/Rbfox1, intron 13 of 14)",16,6349138,7411526,1062389,1,Rbfox1-201,1042817,Rbfox1-201;Rbfox1-202;Rbfox1-203;Rbfox1-208;Rbfox1-207;Rbfox1-206,Rbfox1;Rbfox1;Rbfox1;Rbfox1;Rbfox1;Rbfox1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,35,268859,ENSMUSG00000008658,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22752,cg05514283,0.0000548,0.0000117,4.689554542,0.00000411,gain,ns,-0.00000924,0.0000198,-0.465312557,0.642034348,neg,ns,0.012619814,0.005815165,2.170155787,0.030754099,pos,ns,1.512096986,0.0000597,0.000199983,0.298523132,0.765503924,pos,ns,0.251829547,Cit,Cit_Exon,5,115908662,115908711,115908710,115908711,50,-,TCAAGTCTGACGATGACACCTCCAATTTTGATGAACCAGAGAAGAATTCG,"Exon (Cit-215/Cit, exon 10 of 11)",5,115845278,115925702,80425,1,Cit-215,63384,Cit-215;Cit-214;Cit-212;Cit-201;Cit-202;Cit-203;Cit-207,Cit;Cit;Cit;Cit;Cit;Cit;Cit,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,9,12704,ENSMUSG00000029516,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23674,cg26075628,0.00000227,0.00000259,0.8768643,0.381239352,gain,ns,-0.00000205,0.00000441,-0.465172963,0.642134191,neg,ns,-0.001135371,0.001291131,-0.879361765,0.379886285,neg,ns,0.420346386,0.0000535,0.0000444,1.204660336,0.229253337,pos,ns,0.892819352,Ptbp2,Ptbp2_Intron,3,119724730,119724779,119724730,119724731,50,-,CGAAGGGTGGTTCCCGCAGAATGGTGAGGTGGTCATGGATCATGGTTCAA,"Intron (Ptbp2-201/Ptbp2, intron 9 of 13)",3,119718742,119783388,64647,2,Ptbp2-201,58609,Ptbp2-201;Ptbp2-213;Ptbp2-208;Ptbp2-206;Ptbp2-204;Ptbp2-211;Ptbp2-202,Ptbp2;Ptbp2;Ptbp2;Ptbp2;Ptbp2;Ptbp2;Ptbp2,0;0;0;0;0;-343;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,13,56195,ENSMUSG00000028134,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15530,cg18480996,0.0000532,0.0000142,3.736500023,0.000222097,gain,ns,-0.0000112,0.0000242,-0.465086201,0.64219625,neg,ns,0.025413646,0.007082147,3.58840989,0.000386538,pos,ns,3.412807884,-0.000596337,0.000243554,-2.448475038,0.01490008,neg,ns,0.301118045,Gm11411,Gm11411_Intergenic_upstream,4,81621561,81621610,81621609,81621610,50,-,AGTAAATAGCGCTTGCCATCTCTAACTACAGCTGTGTGAAACCAACAGCG,Distal Intergenic,4,81696441,81697159,719,1,Gm11411-201,-74880,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,6,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17774,cg13378802,-0.00000336,0.00000827,-0.40679606,0.684438496,loss,ns,0.00000653,0.000014,0.464873664,0.642348284,pos,ns,-0.006269277,0.004114333,-1.523765065,0.128586872,neg,ns,0.890803369,-0.0000342,0.000141492,-0.241832278,0.809070022,neg,ns,0.896441015,Son,Son_threeUTR,16,91662535,91662584,91662583,91662584,50,-,ATGGAGGAGGTGTTGAGTGAGCAACACGCAGAAGCTCGCCTACAGTTTCG,3' UTR,16,91647506,91679207,31702,1,Son-203,15029,Son-203;Son-204;Son-202;Son-208;Son-201;Son-205;Son-212;Son-207,Son;Son;Son;Son;Son;Son;Son;Son,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,14,31,20658,ENSMUSG00000022961,conserved gene and region,16,91662523,91662634,112,*,112,9,0.508928571,1.26,0.080357143,0.00000238,CpGisland,TRUE,U10,Tr-S
25127,cg00833227,-0.0000226,0.0000133,-1.695656848,0.090954903,loss,ns,-0.0000105,0.0000226,-0.46485107,0.642364447,neg,ns,0.059320749,0.006630026,8.947287595,3.40E-17,pos,yes,16.4687174,-0.001513689,0.000228006,-6.638808716,1.41E-10,neg,yes,0.478994273,Ahdc1,Ahdc1_Intron,4,133043070,133043119,133043070,133043071,50,+,CGGCAACAGTCCCCCCAGAACAGGCGGAGTGTGTGTCTGCCATTAGCGAC,"Intron (Ahdc1-210/Ahdc1, intron 2 of 3)",4,133011260,133060820,49561,1,Ahdc1-210,31810,Ahdc1-210;Ahdc1-203;Ahdc1-204;Ahdc1-205;Ahdc1-207;Ahdc1-211;Ahdc1-209;Ahdc1-206;Ahdc1-201;Ahdc1-202,Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,35,49,230793,ENSMUSG00000037692,conserved gene and region,4,133043047,133043197,151,*,151,12,0.635761589,0.795085564,0.079470199,2.68E-08,CpGisland,TRUE,U8,En-Pd
26265,cg13147964,-0.00000104,0.00000177,-0.586566197,0.557921971,loss,ns,-0.0000014,0.00000301,-0.464844801,0.642368932,neg,ns,-0.000998067,0.000883004,-1.130307859,0.259220284,neg,ns,0.586331019,0.0000153,0.0000304,0.502346177,0.615780674,pos,ns,0.960930161,Cfap61,Cfap61_Intron,2,145971636,145971685,145971684,145971685,50,+,AAATTCCAAACACAATGAGCCATTAGTGTAATAGCTCATTACTAACAGCG,"Intron (Cfap61-204/Cfap61, intron 7 of 15)",2,145934784,146043073,108290,1,Cfap61-204,36852,Cfap61-204;Cfap61-206,Cfap61;Cfap61,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,13,78774,ENSMUSG00000037143,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15086,cg00740870,-0.00000012,0.00000315,-0.038192125,0.969559082,loss,ns,-0.00000248,0.00000534,-0.464839253,0.642372901,neg,ns,0.001170863,0.001565648,0.747845827,0.455120085,pos,ns,0.341873998,-0.0000111,0.0000538,-0.205591602,0.837244879,neg,ns,0.946153655,Plekhh1,Plekhh1_Exon,12,79040621,79040670,79040621,79040622,50,+,CGCCTACAGGCCAGCAAGATAAGGGAGCTGCTGGCTGACAAGGTGAGTCC,"Exon (Plekhh1-201/Plekhh1, exon 2 of 29)",12,79029163,79081655,52493,1,Plekhh1-201,11458,Plekhh1-201;Plekhh1-202;Plekhh1-204,Plekhh1;Plekhh1;Plekhh1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,211945,ENSMUSG00000060716,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1750,cg08179663,0.00000709,0.00000348,2.040197721,0.042177833,gain,ns,0.00000274,0.0000059,0.464711286,0.642464448,pos,ns,0.004535678,0.001729674,2.622273681,0.009165842,pos,ns,2.037827637,-0.000124518,0.0000595,-2.093326908,0.037132356,neg,ns,0.017499541,Kctd1,Kctd1_fiveUTR,18,15063523,15063572,15063523,15063524,50,-,CGCGCTGGTGTTACAGTCCCCGCTGCCAGGCATTCTCGCCATATTGCCGT,5' UTR,18,14968685,15151446,182762,2,Kctd1-201,87874,Kctd1-201;Kctd1-202;Kctd1-206;Kctd1-205,Kctd1;Kctd1;Kctd1;Kctd1,0;0;0;-1634,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,9,24,106931,ENSMUSG00000036225,conserved gene but different region,18,15063315,15063752,438,*,438,43,0.673515982,0.892352885,0.098173516,1.42E-32,CpGisland,TRUE,U3,Pr-B
6145,cg12407254,-0.00000044,0.00000171,-0.257946224,0.796619566,loss,ns,0.00000135,0.0000029,0.464709344,0.642465837,pos,ns,0.001910834,0.000849793,2.248586592,0.025240942,pos,ns,1.597894445,-0.000056,0.0000292,-1.914823091,0.056435225,neg,ns,0.951521709,Mrrf,Mrrf_Intron,2,36149086,36149135,36149134,36149135,50,+,AAGTGCTCTGTCTCCCCTGTGTTTTCTGGCCTGTTAACATTCTGCAGCCG,"Intron (Mrrf-201/Mrrf, intron 3 of 6)",2,36136389,36190647,54259,1,Mrrf-201,12697,Mrrf-201;Mrrf-202;Mrrf-203,Mrrf;Mrrf;Mrrf,0;12452;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,67871,ENSMUSG00000026887,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20050,cg07304121,0.0000117,0.00000213,5.477382384,8.94E-08,gain,yes,0.00000168,0.00000362,0.464567432,0.642567367,pos,ns,0.003043395,0.001059951,2.871260987,0.0043699,pos,ns,2.359528475,-0.000099,0.0000365,-2.714880057,0.007001437,neg,ns,0.036057211,Ephb1,Ephb1_Promoter,9,102354798,102354847,102354798,102354799,50,+,CGCGAGCACCTCCTTACACTGGCATTGTTAGTTTAAGAAAAACTTTTGCT,Promoter (<=1kb),9,102039192,102354693,315502,2,Ephb1-203,-105,Ephb1-201;Ephb1-202;Ephb1-203,Ephb1;Ephb1;Ephb1,0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,7,270190,ENSMUSG00000032537,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
20181,cg14652759,-0.00000309,0.0000122,-0.253404235,0.800123825,loss,ns,-0.00000962,0.0000207,-0.464530117,0.642594065,neg,ns,-0.003042079,0.006064382,-0.501630484,0.61628353,neg,ns,0.210219439,-0.000148339,0.000208554,-0.711276285,0.477447891,neg,ns,0.611646717,Gm49473,Gm49473_Intergenic_upstream,15,102856040,102856089,102856040,102856041,50,-,CGTTCTGACACCTACAAGCTCGTTACATGATGATGACCTATATTTTTATC,Distal Intergenic,15,102795121,102795371,251,2,Gm49473-201,-60718,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,12,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20176,cg04366185,-0.00000233,0.00000813,-0.286707779,0.774527607,loss,ns,-0.00000641,0.0000138,-0.464408913,0.642680787,neg,ns,-0.003975497,0.004044207,-0.983010422,0.326368877,neg,ns,0.486291263,-0.000162647,0.00013908,-1.169447998,0.243121562,neg,ns,0.680337315,Gm49473,Gm49473_Intergenic_upstream,15,102833180,102833229,102833180,102833181,50,-,CGCTTCCCAGGTAGAGAAACTGAGTCCATGACTTGTCCAGAACTGCCCAA,Distal Intergenic,15,102795121,102795371,251,2,Gm49473-201,-37858,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,12,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21804,cg21639332,0.0000243,0.00000431,5.643208453,3.77E-08,gain,yes,-0.0000034,0.00000732,-0.464382506,0.642699682,neg,ns,0.000746535,0.00214352,0.348275304,0.727869828,pos,ns,0.137946283,0.0000238,0.0000737,0.322974473,0.746932314,pos,ns,0.114450789,Lmo1,Lmo1_Promoter,7,109175489,109175538,109175537,109175538,50,-,CCGCCATTAGCTTATTTAACTCCAAGGACACTAATTACCCGCAGGGCACG,Promoter (<=1kb),7,109138675,109175207,36533,2,Lmo1-202,-331,Lmo1-201;Lmo1-202;Lmo1-203,Lmo1;Lmo1;Lmo1,0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,4,66,109594,ENSMUSG00000036111,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
6487,cg26202373,0.00000049,0.000000545,0.899341652,0.369168749,gain,ns,0.00000043,0.000000926,0.464364248,0.642712746,pos,ns,0.000609464,0.000271318,2.246308593,0.025388057,pos,ns,1.59537053,-0.0000178,0.00000933,-1.908831562,0.057207079,neg,ns,0.011107004,Msantd2,Msantd2_Exon,9,37489671,37489720,37489719,37489720,50,-,GGGCAACGAGCGGCTGGTGGAGGCGCGGTACCAGCAGCTGGAGGGAGCCG,Promoter (<=1kb),9,37489021,37524150,35130,1,Msantd2-209,650,Msantd2-209;Msantd2-204;Msantd2-210;Msantd2-201;Msantd2-202;Msantd2-208;Msantd2-205;Msantd2-203;Msantd2-206,Msantd2;Msantd2;Msantd2;Msantd2;Msantd2;Msantd2;Msantd2;Msantd2;Msantd2,0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,8,235184,ENSMUSG00000042138,conserved gene and region,9,37489051,37490155,1105,*,1105,120,0.717647059,0.844575228,0.108597285,1.63E-95,CpGisland,TRUE,U1,Pr-A
14068,cg09665999,-0.0000133,0.0000054,-2.46785857,0.014132086,loss,ns,-0.00000426,0.00000918,-0.464350066,0.642722894,neg,ns,-0.009770792,0.002689004,-3.633609762,0.000327019,neg,ns,3.485427286,0.000219228,0.0000925,2.370683621,0.018366596,pos,ns,0.818514739,Ccdc92b,Ccdc92b_Exon,11,74630066,74630115,74630066,74630067,50,+,CGAGACCTGCACCTGGAGATCCTGAGGCTGCAGAAACGCTGCTCAGGTGA,"Exon (Ccdc92b-201/Ccdc92b, exon 2 of 4)",11,74619605,74641516,21912,1,Ccdc92b-201,10461,Ccdc92b-201,Ccdc92b,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,432582,ENSMUSG00000069814,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14158,cg05557064,0.0000122,0.00000185,6.595451429,1.83E-10,gain,yes,0.00000146,0.00000314,0.464269114,0.642780819,pos,ns,0.000539634,0.000921142,0.585831604,0.55841494,pos,ns,0.253042971,0.00000906,0.0000317,0.285946859,0.775109806,pos,ns,0.044632725,Hoxd3,Hoxd3_Promoter,2,74711799,74711848,74711847,74711848,50,+,AGAAAATTTACAACTTGGTAATAGACCTTTTTATGACCTATTTGCGGTCG,Promoter (<=1kb),2,74711927,74748271,36345,1,Hoxd3-203,-79,Hoxd3-203;Hoxd4-203;Hoxd8-203;Hoxd8-201;Hoxd8-202,Hoxd3;Hoxd4;Hoxd8;Hoxd8;Hoxd8,0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,7,24,15434,ENSMUSG00000079277,mapped to different genes,2,74711843,74711929,87,*,87,9,0.632183908,1.044,0.103448276,0.000000274,CpGisland,TRUE,U3,Pr-B
15710,cg15373911,0.0000421,0.0000109,3.877093425,0.000129077,gain,ns,0.00000857,0.0000185,0.46421468,0.64281977,pos,ns,0.007769917,0.005408061,1.436728629,0.15180357,pos,ns,0.818718014,-0.000159006,0.000185983,-0.854948579,0.393239864,neg,ns,0.557473068,Tcf20,Tcf20_Intron,15,82952394,82952443,82952394,82952395,50,+,CGAACCAGCTGTTTGGATGACAAACTGTGTTCAAGCTTCATTAGGGTAAT,"Intron (Tcf20-204/Tcf20, intron 1 of 1)",15,82856793,82963558,106766,2,Tcf20-204,11115,Tcf20-204;Tcf20-203,Tcf20;Tcf20,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,13,21411,ENSMUSG00000041852,mapped to different genes,15,82952318,82952577,260,*,260,19,0.630769231,0.738636364,0.073076923,3.18E-12,CpGisland,TRUE,U13,Hc-P
26631,cg04043868,0.00000144,0.00000207,0.694202952,0.488074839,gain,ns,0.00000163,0.00000351,0.46419159,0.642836294,pos,ns,0.002575174,0.001029056,2.502462282,0.012847935,pos,ns,1.891166675,-0.0000827,0.0000354,-2.33652534,0.020100708,neg,ns,0.948106652,Pex14,Pex14_Intron,4,149044660,149044709,149044660,149044661,50,+,CGAGCGAATCCAATTTAAACATCAGGTAAAGTAGAAAACACCTTTTAAAA,"Intron (Pex14-201/Pex14, intron 2 of 8)",4,148960535,149099876,139342,2,Pex14-201,55167,Pex14-201;Pex14-202;Pex14-205;Pex14-203;Pex14-204,Pex14;Pex14;Pex14;Pex14;Pex14,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,41,48,56273,ENSMUSG00000028975,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4112,cg01802957,-0.00000643,0.0000043,-1.497287207,0.135336012,loss,ns,-0.00000339,0.0000073,-0.464170234,0.642851576,neg,ns,0.00133512,0.002138344,0.624370849,0.532843292,pos,ns,0.273400497,-0.0000374,0.0000735,-0.509152911,0.611007258,neg,ns,0.538251831,Gm12072,Gm12072_Intergenic_upstream,11,26815248,26815297,26815296,26815297,50,+,GAAGCCTCCTTATATAGCTCATACGCTGGGACTTTGGTGATACAGATACG,Distal Intergenic,11,26832804,26845457,12654,1,Gm12072-201,-17507,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,7,666270,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15692,cg24159897,0.00000962,0.00000271,3.550539232,0.000444091,gain,ns,0.00000214,0.0000046,0.464122158,0.642885979,pos,ns,0.00222502,0.001348785,1.649648098,0.100027794,pos,ns,0.99987931,0.0000525,0.0000464,1.132633252,0.258243573,pos,ns,0.046620803,Rnf150,Rnf150_Exon,8,82864360,82864409,82864408,82864409,50,+,AGCCCTCATCCCCAAGGGCAACTGCACGTACAGGGATAAGATCCGGAACG,"Exon (Rnf150-201/Rnf150, exon 1 of 7)",8,82863356,83091268,227913,1,Rnf150-201,1004,Rnf150-201;Rnf150-202;Rnf150-203,Rnf150;Rnf150;Rnf150,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,330812,ENSMUSG00000047747,conserved gene but different region,8,82864386,82864594,209,*,209,17,0.636363636,0.805668934,0.081339713,9.42E-12,CpGisland,TRUE,U3,Pr-B
2404,cg25354760,0.000000558,0.00000233,0.239651667,0.810758686,gain,ns,0.00000184,0.00000396,0.46400248,0.642971625,pos,ns,-0.000562712,0.001158905,-0.485554317,0.627626183,neg,ns,0.202298947,-0.00000914,0.0000399,-0.229248407,0.818827024,neg,ns,0.026595781,Fosb,Fosb_Intergenic_downstream,7,19301281,19301330,19301329,19301330,50,+,AAACCTGTAGCTGTCTAGCGACAGAGTGGTTCAATTCCACCTTTCGGGCG,Downstream (1-2kb),7,19304797,19309600,4804,2,Fosb-206,8270,Fosb-201;Fosb-202;Fosb-203;Fosb-205;Fosb-207;Fosb-206,Fosb;Fosb;Fosb;Fosb;Fosb;Fosb,0;0;0;0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,2,13,14282,ENSMUSG00000003545,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17033,cg05773824,0.00000778,0.00000453,1.716958067,0.086985644,gain,ns,-0.00000357,0.0000077,-0.463903426,0.643042515,neg,ns,0.008188418,0.002255085,3.631090132,0.000330096,pos,ns,3.481359921,-0.000179239,0.0000776,-2.311204583,0.02147726,neg,ns,0.911250098,Mllt3,Mllt3_Intron,4,88030453,88030502,88030453,88030454,50,+,CGGATCAAATGGAAGATAACTACTAACCATTGTGTCGACTTAGATAAATA,"Intron (Mllt3-201/Mllt3, intron 2 of 10)",4,87769925,88033364,263440,2,Mllt3-201,2862,Mllt3-201;Mllt3-203;Mllt3-205;Mllt3-206,Mllt3;Mllt3;Mllt3;Mllt3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,13,70122,ENSMUSG00000028496,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7826,cg09841884,-0.00000021,0.000000813,-0.258685301,0.796049736,loss,ns,-0.000000641,0.00000138,-0.463873196,0.643064151,neg,ns,-0.00100882,0.000404695,-2.492790782,0.013195968,neg,ns,1.879558746,0.0000164,0.0000139,1.180311334,0.23878129,pos,ns,0.986859532,Ldb2,Ldb2_threeUTR,5,44473395,44473444,44473395,44473396,50,+,CGTCGTCCATGCCGTTGGCCGCATCATATTGCGTGTTTTCTAATCTAGTG,3' UTR,5,44472132,44799619,327488,2,Ldb2-207,326175,Ldb2-207;Ldb2-201;Ldb2-204;Ldb2-205,Ldb2;Ldb2;Ldb2;Ldb2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,9,16826,ENSMUSG00000039706,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15005,cg25406138,0.0000313,0.00000488,6.417589918,5.18E-10,gain,yes,-0.00000385,0.00000829,-0.463859148,0.643074205,neg,ns,0.004430056,0.002428688,1.824053316,0.069106622,pos,ns,1.160480336,-0.000184026,0.0000835,-2.203318932,0.028307497,neg,ns,0.092720141,Pou4f2,Pou4f2_Promoter,8,78435927,78435976,78435927,78435928,50,-,CGCACAGGCAACATCCCAGGTCATAAAAATTAATATGAAAGGCAAGACCT,Promoter (<=1kb),8,78433010,78436645,3636,2,Pou4f2-201,669,Pou4f2-201,Pou4f2,0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,6,23,18997,ENSMUSG00000031688,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
5471,cg16627533,0.0000256,0.0000083,3.087938722,0.002197779,gain,ns,-0.00000654,0.0000141,-0.46375319,0.643150041,neg,ns,0.010390278,0.004132743,2.514135797,0.012438745,pos,ns,1.90522342,-0.000340859,0.000142125,-2.398309109,0.017061803,neg,ns,0.800922397,Mvb12b,Mvb12b_Intron,2,34033217,34033266,34033217,34033218,50,-,CGTCGATGACATTCAGGTACTAGTGAAAAATTATACCAATTATTAAATCA,"Intron (C230014O12Rik-201/C230014O12Rik-201, intron 1 of 3)",2,33729953,33887946,157994,2,Mvb12b-201,-145320,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,28,47,72543,ENSMUSG00000038740,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10513,cg10958856,0.0000283,0.00000941,3.007417447,0.002850464,gain,ns,-0.00000741,0.000016,-0.463655302,0.643220105,neg,ns,0.003532971,0.004683322,0.754372825,0.45119804,pos,ns,0.345632795,-0.0000805,0.000161059,-0.499832115,0.617547885,neg,ns,0.853701633,Npas3,Npas3_Intron,12,53948090,53948139,53948138,53948139,50,+,AGTCCCCTAGTTCATCAAGCTGTTCAAACACGGGGAAGATTGGCTGGTCG,"Intron (Npas3-204/Npas3, intron 5 of 10)",12,53248157,54069532,821376,1,Npas3-204,699933,Npas3-204;Npas3-201;Npas3-203,Npas3;Npas3;Npas3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,83,103,27386,ENSMUSG00000021010,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20117,cg09706122,0.0000656,0.00000996,6.583369599,1.96E-10,gain,yes,0.00000785,0.0000169,0.463650446,0.643223581,pos,ns,0.013809922,0.004959223,2.784694524,0.005687296,pos,ns,2.245094194,-0.000346812,0.000170547,-2.033521534,0.042851289,neg,ns,0.074935442,Atp5g2,Atp5g2_Promoter,15,102672353,102672402,102672353,102672354,50,-,CGACGCCATTACAGGAATGTAATTTTGCCCGGATGAGGCCCCGAGTTTAA,Promoter (<=1kb),15,102665801,102672352,6552,2,Atp5g2-203,-50,Atp5g2-202;Atp5g2-201;Atp5g2-204;Atp5g2-203,Atp5g2;Atp5g2;Atp5g2;Atp5g2,-1226;-4604;-4610;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,10,18,67942,ENSMUSG00000062683,mapped to different genes,15,102672078,102672489,412,*,412,37,0.621359223,0.940117176,0.089805825,1.33E-26,CpGisland,TRUE,U1,Pr-A
9694,cg27029045,-0.0000108,0.00000638,-1.697711064,0.090565855,loss,ns,-0.00000503,0.0000108,-0.4636447,0.643227694,neg,ns,-0.00507262,0.0031759,-1.597222791,0.111234856,neg,ns,0.953759101,0.0000241,0.000109219,0.220592936,0.825554612,pos,ns,0.911927376,Gm7481,Gm7481_Intergenic_upstream,12,50112122,50112171,50112170,50112171,50,-,GACAAATTGCTTGCTGGTGGGCTGTGCAGAGTGTTATTCTGGCAGCATCG,Distal Intergenic,12,49840757,49841751,995,2,Gm7481-201,-270420,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,27,37,665077,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21635,cg18117260,0.00000537,0.00000229,2.344247831,0.01969657,gain,ns,0.00000181,0.00000389,0.463544931,0.643299107,pos,ns,0.001337786,0.001141048,1.172418572,0.241929219,pos,ns,0.616311677,-0.0000551,0.0000392,-1.402986363,0.161621659,neg,ns,0.030925539,Zfhx3,Zfhx3_fiveUTR,8,108703600,108703649,108703648,108703649,50,-,TTTTTTGCTGAATCTTATTGATCCAGAAGGTGGCTAATTAGCCCTTCCCG,5' UTR,8,107942644,108961630,1018987,1,Zfhx3-204,760956,Zfhx3-204;Zfhx3-202,Zfhx3;Zfhx3,0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,11,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
1440,cg05121253,-0.0000466,0.0000104,-4.503737734,0.00000947,loss,ns,0.00000815,0.0000176,0.463514313,0.643321024,pos,ns,0.00685454,0.005153598,1.330049635,0.184479632,pos,ns,0.734051575,0.000386831,0.000177232,2.182625747,0.029813521,pos,ns,0.865506331,Mycn,Mycn_threeUTR,12,12936324,12936373,12936372,12936373,50,+,AAGTGATAAAGTAATATCTACTCAAAACTTTCACAACTCATTTTCATACG,3' UTR,12,12936093,12941914,5822,2,Mycn-201,5541,Mycn-201;Mycn-202;Mycn-203,Mycn;Mycn;Mycn,0;0;5452,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,3,18109,ENSMUSG00000037169,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26257,cg08166509,-0.000157622,0.0000136,-11.60700883,4.16E-26,loss,yes,0.0000107,0.0000231,0.463438408,0.643375359,pos,ns,-0.022822209,0.006758851,-3.376640208,0.000827267,neg,ns,3.082354154,0.000685007,0.000232436,2.94707261,0.003451384,pos,ns,0.771594167,Ccn1,Ccn1_Exon,3,145651821,145651870,145651821,145651822,50,+,CGTCTTTTCTATTTGACTTCATGGTTGTAAGTATTTCCAGATGGTGAATC,Promoter (1-2kb),3,145646976,145649981,3006,2,Ccn1-201,-1840,Ccn1-201,Ccn1,-1840,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,3,16007,ENSMUSG00000028195,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
22734,cg17284609.2,-7.69E-08,0.0000092,-0.008359812,0.99333529,loss,ns,-0.00000724,0.0000156,-0.463379578,0.643417473,neg,ns,-0.007561106,0.004578443,-1.65145778,0.099657713,neg,ns,1.001489084,-0.0000236,0.000157452,-0.149913059,0.880930697,neg,ns,0.763181595,Sox6,Sox6_Intron,7,115866080,115866129,115866128,115866129,50,-,CTCATAAGCTCAAAAGCTGGTAGTCTAACTGGCTGCCCTAATTAGCTACG,"Intron (Sox6-210/Sox6, intron 2 of 15)",7,115470872,116031047,560176,2,Sox6-210,164918,Sox6-210;Sox6-201;Sox6-202;Sox6-204;Sox6-206;Sox6-209;Sox6-214;Sox6-208,Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,37,57,20679,ENSMUSG00000051910,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25952,cg10876427,0.0000108,0.00000228,4.741944547,0.00000323,gain,ns,-0.00000179,0.00000387,-0.463195134,0.643549515,neg,ns,0.000420217,0.001133297,0.370791633,0.711045981,pos,ns,0.148102314,0.0000111,0.000039,0.284273111,0.776390879,pos,ns,0.95092271,Spen,Spen_Exon,4,141522200,141522249,141522248,141522249,50,-,ATCCAATCCCCGAGCAGCACTCGGGATGGTGCCTGGTTCATTATAATCCG,"Exon (Spen-201/Spen, exon 2 of 15)",4,141467890,141538449,70560,2,Spen-201,16200,Spen-201;Spen-202;Spen-205,Spen;Spen;Spen,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,17,19,56381,ENSMUSG00000040761,conserved gene and region,4,141522177,141522281,105,*,105,9,0.552380952,1.125,0.085714286,0.00000139,CpGisland,TRUE,U10,Tr-S
12149,cg04516741,0.000131115,0.00000888,14.77036576,9.50E-38,gain,yes,-0.00000698,0.0000151,-0.462948329,0.643726218,neg,ns,0.004018372,0.004418113,0.909522286,0.363781089,pos,ns,0.439159882,0.000159765,0.000151939,1.05151252,0.293842233,pos,ns,0.291781285,Skor1,Skor1_Intron,9,63139729,63139778,63139729,63139730,50,+,CGCTTAAAGGCAGATGGATCTAACCAAAATTAAAGCAAACTTAGGCATTA,"Intron (Skor1-203/Skor1, intron 7 of 8)",9,63138170,63147011,8842,2,Skor1-203,7233,Skor1-203;Skor1-202;Skor1-201,Skor1;Skor1;Skor1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,15,207667,ENSMUSG00000022245,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
8116,cg18701104,-0.000005,0.00000309,-1.61704297,0.10688609,loss,ns,-0.00000243,0.00000525,-0.462923793,0.643743786,neg,ns,0.000469907,0.00153933,0.305267159,0.760367552,pos,ns,0.118976424,-0.0000723,0.0000529,-1.366388997,0.172807172,neg,ns,0.929645148,Ebf1,Ebf1_Intron,11,44753645,44753694,44753645,44753646,50,+,CGTTACAGGGTCGGGAATAGGAAATATTACTCATAACATAAAGTAGGGAT,"Intron (Ebf1-203/Ebf1, intron 6 of 15)",11,44617317,45004995,387679,1,Ebf1-203,136328,Ebf1-203;Ebf1-202;Ebf1-201,Ebf1;Ebf1;Ebf1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,80,13591,ENSMUSG00000057098,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17772,cg07000535,-0.00000859,0.00000266,-3.232218329,0.001360533,loss,ns,-0.00000209,0.00000451,-0.462703743,0.643901354,neg,ns,-0.001867102,0.001322537,-1.411757563,0.159024295,neg,ns,0.79853652,0.00000339,0.0000455,0.074533753,0.940633757,pos,ns,0.940749487,Son,Son_threeUTR,16,91662528,91662577,91662528,91662529,50,+,CGTTTGAATGGAGGAGGTGTTGAGTGAGCAACACGCAGAAGCTCGCCTAC,3' UTR,16,91647506,91679207,31702,1,Son-203,15022,Son-203;Son-204;Son-202;Son-208;Son-201;Son-205;Son-212;Son-207,Son;Son;Son;Son;Son;Son;Son;Son,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,14,31,20658,ENSMUSG00000022961,conserved gene and region,16,91662523,91662634,112,*,112,9,0.508928571,1.26,0.080357143,0.00000238,CpGisland,TRUE,U10,Tr-S
20477,cg07254243,0.0000361,0.00000546,6.607554694,1.70E-10,gain,yes,-0.00000429,0.00000927,-0.462679518,0.643918701,neg,ns,0.006843233,0.002716511,2.519125438,0.012267412,pos,ns,1.911247065,-0.000174344,0.0000934,-1.866224135,0.062954131,neg,ns,0.105368432,Hoxc4,Hoxc4_Intergenic_downstream,15,103061721,103061770,103061721,103061722,50,+,CGAGAGTTCACACGGCTTTCGCTGCTGTTGAAGGTTAAAAGATGGTCTTC,Distal Intergenic,15,103034395,103036852,2458,1,Hoxc4-201,27326,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,32,91,15423,ENSMUSG00000075394,mapped to different genes,15,103061537,103061809,273,*,273,19,0.586080586,0.8125,0.06959707,7.69E-12,CpGisland,TRUE,U13,Hc-P
2047,cg14278713,-0.00000561,0.00000118,-4.741353236,0.00000324,loss,ns,0.000000929,0.00000201,0.462660036,0.643932652,pos,ns,-0.000262345,0.000588384,-0.44587371,0.655999718,neg,ns,0.183096347,-0.0000185,0.0000202,-0.916643928,0.360041796,neg,ns,0.034508901,Cited2,Cited2_Promoter,10,17722296,17722345,17722344,17722345,50,-,AGGTGGATCTGGGGACGAGGATCGCTGAGTTTGTTTACAGAGCAGAGACG,Promoter (<=1kb),10,17723218,17725674,2457,1,Cited2-201,-922,Cited2-201;Cited2-203;Cited2-202,Cited2;Cited2;Cited2,0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,4,11,17684,ENSMUSG00000039910,conserved gene and region,10,17722311,17722562,252,*,252,22,0.638888889,0.855555556,0.087301587,9.52E-16,CpGisland,TRUE,U1,Pr-A
11112,cg25008538,-0.0000167,0.0000113,-1.473299278,0.141684995,loss,ns,0.0000089,0.0000192,0.462628044,0.643955561,pos,ns,-0.003852109,0.005634632,-0.683648746,0.494707668,neg,ns,0.305651358,-0.0000672,0.000193775,-0.346562151,0.729155402,neg,ns,0.593646521,Lingo1,Lingo1_Intron,9,56639192,56639241,56639240,56639241,50,-,GGCTGGGACAGCAGAGTCATTGCTGAGACCTCTAATTAGCAAGAAAAACG,"Intron (Lingo1-201/Lingo1, intron 3 of 3)",9,56618475,56685253,66779,2,Lingo1-201,46012,Lingo1-201;Lingo1-206;Lingo1-203;Lingo1-202,Lingo1;Lingo1;Lingo1;Lingo1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,25,235402,ENSMUSG00000049556,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18691,cg18765724,0.0000943,0.0000128,7.344240223,1.84E-12,gain,yes,0.0000101,0.0000218,0.462577507,0.643991752,pos,ns,0.021870178,0.006392455,3.42124895,0.000706938,pos,ns,3.150618937,-0.000515203,0.000219836,-2.343577388,0.019731371,neg,ns,0.248597972,Skap1,Skap1_Intron,11,96742125,96742174,96742125,96742126,50,+,CGTTCATTTATTCTGGCGACCTTACCATGACCCCACCGAGGGTAGGGTGA,"Intron (Skap1-204/Skap1, intron 11 of 12)",11,96464593,96758941,294349,1,Skap1-204,277532,Skap1-204;Skap1-203;Skap1-201,Skap1;Skap1;Skap1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,40,46,78473,ENSMUSG00000057058,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
16325,cg16283205,-0.0000229,0.00000733,-3.130932062,0.001908601,loss,ns,-0.00000576,0.0000125,-0.462536602,0.644021046,neg,ns,-0.01061409,0.00364802,-2.909548246,0.003881329,neg,ns,2.411019546,0.000189748,0.000125455,1.512477473,0.131431198,pos,ns,0.11249591,Nfix,Nfix_Intron,8,84745761,84745810,84745809,84745810,50,-,GAAGGCTCTTGAGGTCAAGACCTGAACAACTGGAGTTGTAATGAGCCACG,"Intron (Nfix-204/Nfix, intron 2 of 10)",8,84704712,84773396,68685,2,Nfix-204,27586,Nfix-204;Nfix-201;Nfix-202;Nfix-203;Nfix-205,Nfix;Nfix;Nfix;Nfix;Nfix,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,49,18032,ENSMUSG00000001911,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17845,cg22769376,-0.0000599,0.00000956,-6.267707689,1.23E-09,loss,yes,0.00000751,0.0000162,0.46247579,0.644064597,pos,ns,0.036911165,0.004759926,7.754566908,1.29E-13,pos,yes,12.89082607,-0.000999953,0.000163693,-6.108695354,3.01E-09,neg,yes,0.789381966,G3bp2,G3bp2_Exon,5,92068443,92068492,92068443,92068444,50,+,CGAATTTTAGTATGACATTCACTGAAGTTCAGAGATAATACTTTGTGGTG,"Exon (G3bp2-203/G3bp2, exon 4 of 11)",5,92052146,92083557,31412,2,G3bp2-203,15065,G3bp2-203;G3bp2-201;G3bp2-202;G3bp2-204;G3bp2-209;G3bp2-210;G3bp2-206;G3bp2-207;G3bp2-205;G3bp2-208,G3bp2;G3bp2;G3bp2;G3bp2;G3bp2;G3bp2;G3bp2;G3bp2;G3bp2;G3bp2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,5,23881,ENSMUSG00000029405,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14722,cg04904662,-0.00000298,0.00000126,-2.374932982,0.018160348,loss,ns,-0.000000987,0.00000214,-0.462446048,0.644085897,neg,ns,0.000561388,0.000625557,0.897421354,0.370190545,pos,ns,0.431574677,-0.0000222,0.0000215,-1.030790515,0.303442605,neg,ns,0.96343015,Rnf165,Rnf165_threeUTR,18,77461778,77461827,77461778,77461779,50,-,CGGTCAGGCACCAAAACAAGAAACTCAATGAGAAATATTTGGTGCGAATT,3' UTR,18,77456110,77565136,109027,2,Rnf165-201,103309,Rnf165-201;Rnf165-202;Rnf165-207;Rnf165-204,Rnf165;Rnf165;Rnf165;Rnf165,0;0;5321;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,10,21,225743,ENSMUSG00000025427,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14336,cg19017031,-0.000000377,0.000000786,-0.479895383,0.631640202,loss,ns,0.000000617,0.00000133,0.462359274,0.644148043,pos,ns,-0.0000617,0.000391024,-0.157715313,0.874783813,neg,ns,0.058099262,0.00000829,0.0000134,0.616217484,0.538203205,pos,ns,0.022590239,Hic1,Hic1_Exon,11,75173707,75173756,75173755,75173756,50,+,CTGTGGGAACTGGAGGTAACAGTCTACAGCCATGGTCGCCCCGCAGCACG,Promoter (4-5kb),11,75164565,75169519,4955,2,Hic1-201,-4188,Dph1-201;Dph1-205;Dph1-204;Hic1-201;Ovca2-201;Ovca2-202,Dph1;Dph1;Dph1;Hic1;Ovca2;Ovca2,0;0;7556;0;5079;5031,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,10,15248,ENSMUSG00000043099,mapped to different genes,11,75173365,75173778,414,*,414,46,0.719806763,0.891573034,0.111111111,1.73E-37,CpGisland,TRUE,U3,Pr-B
15570,cg20537035,-0.0000335,0.0000107,-3.123506187,0.001955896,loss,ns,-0.00000843,0.0000182,-0.46231302,0.644181171,neg,ns,-0.012505895,0.005343372,-2.340449996,0.01989442,neg,ns,1.701268707,-0.00018549,0.000183758,-1.009425889,0.313557661,neg,ns,0.668965845,Cetn3,Cetn3_Intergenic_downstream,13,81828611,81828660,81828611,81828612,50,-,CGAGAAATATTGTAACAGTATGTAATCTCTGTCAAGATAAAATTGCTTTG,Distal Intergenic,13,81791977,81793668,1692,1,Cetn3-204,36683,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,9,12626,ENSMUSG00000021537,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12611,cg22967055,-0.0000206,0.0000111,-1.85508474,0.064533344,loss,ns,0.00000872,0.0000189,0.462250333,0.644226069,pos,ns,0.006488639,0.005526366,1.174124038,0.241246542,pos,ns,0.617538903,-0.000428174,0.000190051,-2.252938719,0.024961937,neg,ns,0.783205366,Csrnp3,Csrnp3_Intergenic_upstream,2,65833110,65833159,65833110,65833111,50,-,CGGCTTTATCCATGGGTGGCAGATGTTATCACCATATGTCATCCGATCAA,Distal Intergenic,2,65845767,66031546,185780,1,Csrnp3-204,-12657,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,77771,ENSMUSG00000044647,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21778,cg19227907,0.0000309,0.00000995,3.104990265,0.002078572,gain,ns,0.00000781,0.0000169,0.462177258,0.644278409,pos,ns,0.01545409,0.004951795,3.120906898,0.001972705,pos,ns,2.704937899,-0.000483775,0.000170292,-2.84085982,0.004797041,neg,ns,0.341770442,Ric3,Ric3_Intergenic_upstream,7,109115288,109115337,109115336,109115337,50,+,GTTCTATTAAGCCCACTGACCCCAATTGAATATTAATTAGCTAATTAACG,Distal Intergenic,7,109034312,109083331,49020,2,Ric3-201,-31957,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,4,320360,ENSMUSG00000048330,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24860,cg18595968,-0.00000233,0.00000136,-1.704876387,0.08921933,loss,ns,0.00000107,0.00000232,0.462174766,0.644280194,pos,ns,-0.000366917,0.00067897,-0.540402361,0.589307614,neg,ns,0.229657948,0.0000219,0.0000233,0.937469314,0.349246983,pos,ns,0.029835482,Zc3h6,Zc3h6_fiveUTR,2,128967602,128967651,128967650,128967651,50,+,GGTTGTTAATAGACTGGAAAGTCTGTGTCTGTGTCGCTCACTAGTAACCG,Promoter (<=1kb),2,128967402,129018563,51162,1,Zc3h6-202,200,Zc3h6-202;Zc3h6-201,Zc3h6;Zc3h6,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,7,8,78751,ENSMUSG00000042851,conserved gene and region,2,128967149,128967791,643,*,643,69,0.6718507,0.959162055,0.107309487,8.30E-55,CpGisland,TRUE,U1,Pr-A
3849,cg04781683,0.0000144,0.00000895,1.608803289,0.108677238,gain,ns,-0.00000703,0.0000152,-0.462061086,0.644361621,neg,ns,0.006927181,0.004454686,1.55503247,0.120958625,pos,ns,0.917363159,-0.000186332,0.000153196,-1.216295849,0.224797538,neg,ns,0.204509823,Celf4,Celf4_Intron,18,25577821,25577870,25577821,25577822,50,-,CGTGTTAATGATGCTGGCTGCCTTTTGTAGGCTGGAGTTTACTGCAGTGT,"Intron (Celf4-202/Celf4, intron 2 of 12)",18,25477632,25753983,276352,2,Celf4-202,176113,Celf4-202;Celf4-201;Celf4-203;Celf4-207;Celf4-206;Celf4-209,Celf4;Celf4;Celf4;Celf4;Celf4;Celf4,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,59,108013,ENSMUSG00000024268,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27635,cg07600198,-0.00000616,0.00000179,-3.449636477,0.000639095,loss,ns,0.0000014,0.00000304,0.462026298,0.644386539,pos,ns,0.000957665,0.00088947,1.076669603,0.28246506,pos,ns,0.549035265,-0.0000773,0.0000306,-2.525980959,0.012035434,neg,ns,0.949683552,Rab22a,Rab22a_Exon,2,173688178,173688227,173688226,173688227,50,+,CAAAATGAGCTACATAAATTCCTAATCTGGGATACAGCTGGACAAGAACG,"Exon (Rab22a-201/Rab22a, exon 3 of 7)",2,173659760,173707315,47556,1,Rab22a-203,28418,Rab22a-203;Rab22a-201;Rab22a-202,Rab22a;Rab22a;Rab22a,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,19334,ENSMUSG00000027519,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11561,cg05120715,-0.0000429,0.0000123,-3.47599094,0.000581604,loss,ns,0.00000968,0.000021,0.461914931,0.644466315,pos,ns,0.000664604,0.006139507,0.108250446,0.91386706,pos,ns,0.039116976,0.0000131,0.000211137,0.061861527,0.950712971,pos,ns,0.304715051,Ugcg,Ugcg_Exon,4,59189693,59189742,59189741,59189742,50,+,TCCTCTTCTTGGTGCTGTGGCTGATGCATTTCATGGCTATCATCTACACG,Promoter (<=1kb),4,59189257,59222833,33577,1,Ugcg-201,436,Ugcg-201;Ugcg-203,Ugcg;Ugcg,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,22234,ENSMUSG00000028381,conserved gene and region,4,59189741,59189943,203,*,203,21,0.660098522,1.015,0.103448276,1.20E-16,CpGisland,TRUE,U1,Pr-A
10597,cg17529106,-0.00000681,0.00000282,-2.412008985,0.016445588,loss,ns,-0.00000222,0.0000048,-0.461859705,0.644505877,neg,ns,-0.002838558,0.001405744,-2.019256664,0.044320905,neg,ns,1.353391382,0.0000422,0.0000483,0.873611644,0.383006013,pos,ns,0.911144852,Acin1,Acin1_Exon,14,54649538,54649587,54649586,54649587,50,+,TCTTCAGTTCAGCCAATCGCACCTCACTGTGTACTGTATCTAGTCAACCG,"Exon (Acin1-225/Acin1, exon 1 of 6)",14,54642161,54653616,11456,2,Acin1-208,4029,Acin1-208;Acin1-216;Acin1-202;Acin1-201;Acin1-219;Acin1-218;Acin1-221;Acin1-224;Acin1-203;Acin1-222;Acin1-205;Acin1-211;Acin1-225;Acin1-207;Acin1-204;Acin1-226;Acin1-213;Acin1-214;Acin1-209;Acin1-220;Gm17606-201,Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Gm17606,0;0;0;0;0;0;0;0;0;-3672;0;-3491;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,22,56215,ENSMUSG00000022185,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14878,cg20391023,0.00000845,0.00000404,2.090157624,0.037418147,gain,ns,0.00000317,0.00000687,0.461540661,0.644734446,pos,ns,0.003795591,0.002011549,1.886899799,0.06010806,pos,ns,1.221067287,-0.000101679,0.0000692,-1.469835916,0.14262035,neg,ns,0.893008585,Flot2,Flot2_fiveUTR,11,78053368,78053417,78053416,78053417,50,+,CTCTGGAGGTTATGACCATCCTGTGTCGCTGTGAGAATATTGAGACGTCG,5' UTR,11,78037931,78060434,22504,1,Flot2-201,15437,Flot2-201;Flot2-205;Flot2-203;Flot2-202;Flot2-204,Flot2;Flot2;Flot2;Flot2;Flot2,0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,9,13,14252,ENSMUSG00000061981,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9611,cg05031474,0.00010226,0.00000956,10.69961014,6.02E-23,gain,yes,0.00000749,0.0000162,0.461471157,0.644784245,pos,ns,0.017800941,0.004756789,3.742218262,0.000217317,pos,ns,3.662906656,-0.000377862,0.000163586,-2.309872186,0.021551926,neg,ns,0.101794922,Slc35f4,Slc35f4_fiveUTR,14,49525500,49525549,49525500,49525501,50,+,CGGCGTCTTACTTTTCTGGCTGGAGTAACCTGGATAATAGCCATAGTAGC,Promoter (<=1kb),14,49298519,49525865,227347,2,Slc35f4-204,316,Slc35f4-204;Slc35f4-201;Slc35f4-202;Slc35f4-205,Slc35f4;Slc35f4;Slc35f4;Slc35f4,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,1,75288,ENSMUSG00000021852,conserved gene but different region,14,49525476,49525970,495,*,495,53,0.696969697,0.88980464,0.107070707,3.54E-42,CpGisland,TRUE,U13,Hc-P
23821,cg17002390,-0.00000143,0.00000207,-0.689981115,0.490722269,loss,ns,-0.00000163,0.00000352,-0.461465549,0.644788263,neg,ns,-0.001655455,0.00103239,-1.603517956,0.109838675,neg,ns,0.959244715,0.0000257,0.0000355,0.724817965,0.469110434,pos,ns,0.039175644,Galnt2l,Galnt2l_Intron,8,120487090,120487139,120487138,120487139,50,-,GACAATGAGCGCACAGGATGTGGTTTGGCGGCAGGGTTTTTTCCCCTTCG,"Intron (Galnt2l-201/Galnt2l, intron 1 of 15)",8,119910841,124345722,4434882,1,Galnt2l-201,576249,Galnt2l-201;Gse1-206;Gse1-201,Galnt2l;Gse1;Gse1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,28,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
17322,cg07647395,0.00000467,0.00000476,0.981729952,0.326998458,gain,ns,0.00000373,0.00000809,0.461374769,0.644853308,pos,ns,0.004687129,0.002369225,1.978338633,0.048775531,pos,ns,1.311797998,-0.000171326,0.0000815,-2.102740689,0.036294454,neg,ns,0.912920555,Agap1,Agap1_Intron,1,89700416,89700465,89700464,89700465,50,+,TTAATGAAATTAACTGCAGTCCTAATTATGCCAGTGAATACTAAAGACCG,"Intron (Agap1-201/Agap1, intron 9 of 17)",1,89454806,89897617,442812,1,Agap1-201,245610,Agap1-201;Agap1-204;Agap1-202,Agap1;Agap1;Agap1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,29,347722,ENSMUSG00000055013,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18629,cg21853871,0.000228755,0.0000186,12.2700919,1.77E-28,gain,yes,-0.0000146,0.0000317,-0.461321499,0.644891478,neg,ns,0.024029088,0.009278952,2.589633973,0.010061233,pos,ns,1.997348798,-0.000389552,0.000319102,-1.220772872,0.223099742,neg,ns,0.375466512,Hoxb3,Hoxb3_Intron,11,96345314,96345363,96345362,96345363,50,-,AGAACAGGTCTCTTAATAAATGCCACTATTATAGAGTGTCCGCTAATGCG,"Intron (Hoxb3-202/Hoxb3, intron 3 of 3)",11,96323326,96347930,24605,1,Hoxb3-202,21988,Hoxb3-202;Hoxb3-203;Hoxb3-204;Hoxb3-201,Hoxb3;Hoxb3;Hoxb3;Hoxb3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,19,15410,ENSMUSG00000048763,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
11259,cg16034279,0.000000624,0.0000093,0.067144094,0.946510275,gain,ns,0.00000728,0.0000158,0.461165133,0.645003526,pos,ns,-0.008622287,0.004627332,-1.863338724,0.063360078,neg,ns,1.198184296,0.0000854,0.000159134,0.536669232,0.591881041,pos,ns,0.801121828,Gm5254,Gm5254_Intron,1,57213645,57213694,57213645,57213646,50,-,CGCTAAAACCCTCGGGGAGAATCTACTGTGTGTGACAAAGAAATATGTCT,"Intron (BC055402-201/BC055402-201, intron 2 of 6)",1,57291425,57292401,977,2,Gm5254-201,78756,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,2,383509,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12299,cg04201608,0.00000326,0.00000305,1.068795935,0.285993167,gain,ns,0.00000239,0.00000519,0.461149657,0.645014616,pos,ns,0.00088723,0.00151948,0.58390364,0.559709763,pos,ns,0.252037118,-0.0000493,0.0000523,-0.943375143,0.346223679,neg,ns,0.93054365,Fign,Fign_Intergenic_downstream,2,63878167,63878216,63878167,63878168,50,-,CGCTTGACAGAGCCGTTTAATATTTTGACAAGACAAAATATAAAGCAGCA,Distal Intergenic,2,63980447,64097988,117542,2,Fign-202,219821,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,28,84,60344,ENSMUSG00000075324,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3323,cg12510047,-0.0000142,0.00000426,-3.326337455,0.000985735,loss,ns,-0.00000334,0.00000724,-0.460956132,0.645153302,neg,ns,-0.002582553,0.002119612,-1.218408556,0.223995195,neg,ns,0.649761297,0.0000316,0.0000729,0.434193075,0.664450283,pos,ns,0.929412705,Gm11890,Gm11890_Intergenic_downstream,4,23602637,23602686,23602637,23602638,50,+,CGATGCAGTCTCCAATTAGCTGTCTACGGTGGCACAAGCAGCTGCCTGAT,Distal Intergenic,4,23659928,23660344,417,2,Gm11890-201,57658,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,32,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7201,cg01460217,-0.0000278,0.00000762,-3.650907636,0.000306611,loss,ns,0.00000596,0.0000129,0.460815386,0.645254173,pos,ns,-0.011183885,0.003791251,-2.949919505,0.003420613,neg,ns,2.46589607,0.000464545,0.000130381,3.562987536,0.000424341,pos,ns,0.843661279,Jade1,Jade1_threeUTR,3,41604974,41605023,41604974,41604975,50,+,CGGCAGGACCTGGAGAGGGTAATGATTGACACTGACACCTTATAGTGACT,3' UTR,3,41555731,41616864,61134,1,Jade1-201,49243,Jade1-201;Jade1-202;Jade1-204;Jade1-203;Jade1-206;Jade1-213;Jade1-205;Jade1-208;Jade1-207,Jade1;Jade1;Jade1;Jade1;Jade1;Jade1;Jade1;Jade1;Jade1,0;0;0;0;0;13301;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,16,269424,ENSMUSG00000025764,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18857,cg09775241,0.00000084,0.00000159,0.52927704,0.596992075,gain,ns,-0.00000124,0.0000027,-0.460790122,0.64527228,neg,ns,0.0001864,0.000789922,0.235973363,0.813609166,pos,ns,0.089584167,-0.0000113,0.0000272,-0.414479624,0.678809546,neg,ns,0.072283646,Pip4k2b,Pip4k2b_Exon,11,97744487,97744536,97744487,97744488,50,+,CGCTGGCCCGGAATAGCTTCACTTTCTGGCACACGAAATGCTTCTTCTTG,Promoter (<=1kb),11,97715157,97744704,29548,2,Pip4k2b-201,168,Cwc25-203;Cwc25-201;Cwc25-204;Pip4k2b-201,Cwc25;Cwc25;Cwc25;Pip4k2b,6634;22020;8174;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,108083,ENSMUSG00000018547,conserved gene and region,11,97744124,97745191,1068,*,1068,111,0.699438202,0.850135536,0.103932584,4.53E-86,CpGisland,TRUE,U1,Pr-A
5502,cg20868028,-0.0000446,0.0000215,-2.07602569,0.038715499,loss,ns,0.0000168,0.0000365,0.460774169,0.645283715,pos,ns,0.00138581,0.010682156,0.129731276,0.896863172,pos,ns,0.047273809,-0.000088,0.000367358,-0.239570671,0.810821426,neg,ns,0.053844717,Brd2,Brd2_fiveUTR,17,34119046,34119095,34119094,34119095,50,-,AAGTGGTTTAGGGAGCCGCCGCCTCCATCTTTGAAATCCTCTTGAGGGCG,5' UTR,17,34112023,34121747,9725,2,Brd2-203,2652,Brd2-203;Brd2-201;Brd2-207;Brd2-202;Brd2-205;Brd2-215;Brd2-209;Brd2-210;Brd2-214;Brd2-206;Brd2-208;Brd2-217;Brd2-219;Brd2-218;Brd2-213;Brd2-211;Brd2-212;H2-DMa-206;H2-DMa-208;H2-DMa-204;H2-DMa-201;H2-DMa-203,Brd2;Brd2;Brd2;Brd2;Brd2;Brd2;Brd2;Brd2;Brd2;Brd2;Brd2;Brd2;Brd2;Brd2;Brd2;Brd2;Brd2;H2-DMa;H2-DMa;H2-DMa;H2-DMa;H2-DMa,0;0;0;0;0;0;0;0;0;0;-3576;-2610;-1851;1816;2855;3524;3539;-446;-493;-3727;-3737;-3751,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,3,14312,ENSMUSG00000024335,conserved gene and region,17,34118303,34120547,2245,*,2245,232,0.673051225,0.916933087,0.103340757,2.17E-178,CpGisland,TRUE,U1,Pr-A
5129,cg26422472,-0.00000298,0.00000182,-1.634297887,0.103211382,loss,ns,0.00000143,0.0000031,0.460734394,0.645312223,pos,ns,-0.001049581,0.000907723,-1.156278862,0.248457416,neg,ns,0.604748035,-0.0000019,0.0000312,-0.060764455,0.951585954,neg,ns,0.95427237,Fli1,Fli1_Exon,9,32424198,32424247,32424246,32424247,50,-,CCGTCATTTTGAACTCCCCGTTGGTCCCCTCCCAGGTGATACAGCTGGCG,"Exon (Fli1-201/Fli1, exon 9 of 9)",9,32422204,32541595,119392,2,Fli1-201,117348,Fli1-201;Fli1-202,Fli1;Fli1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,15,14247,ENSMUSG00000016087,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8965,cg24127130,-0.00000213,0.000000971,-2.191980818,0.029124305,loss,ns,0.00000076,0.00000165,0.460709801,0.645329849,pos,ns,-0.000263624,0.000483169,-0.545615718,0.585722499,neg,ns,0.232308094,0.0000109,0.0000166,0.657029822,0.511649222,pos,ns,0.987443931,Kcnc1,Kcnc1_threeUTR,7,46437402,46437451,46437450,46437451,50,-,ACCCTCGGACAGAGTAAATTCACGCCATGCAGGTTTGCCGGACGAGTCCG,3' UTR,7,46397648,46438704,41057,1,Kcnc1-203,39754,Kcnc1-201;Kcnc1-203,Kcnc1;Kcnc1,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,14,16502,ENSMUSG00000058975,conserved gene and region,7,46437407,46437524,118,*,118,10,0.542372881,1.162561576,0.084745763,0.000000309,CpGisland,TRUE,U15,NS
2829,cg09368629,-0.0000108,0.00000381,-2.827496559,0.004996537,loss,ns,-0.00000298,0.00000648,-0.460469395,0.64550217,neg,ns,-0.000945655,0.001897252,-0.498434226,0.618531469,neg,ns,0.2086382,-0.0000634,0.0000652,-0.971727749,0.331943591,neg,ns,0.943929626,Reln,Reln_Exon,5,21925399,21925448,21925399,21925400,50,-,CGAGTGGCAATCTCTTTAGCATCAGGAGGGAGAAGGATATTCACAAATCT,"Exon (Reln-207/Reln, exon 50 of 65)",5,21884454,22344702,460249,2,Reln-207,419254,Reln-207;Reln-201;Reln-203,Reln;Reln;Reln,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,6,19699,ENSMUSG00000042453,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10990,cg10071034,0.000000381,0.00000281,0.135420772,0.892367091,gain,ns,-0.0000022,0.00000478,-0.460428307,0.645531623,neg,ns,0.000720981,0.0013997,0.515096639,0.606852582,pos,ns,0.216916796,-0.0000189,0.0000481,-0.391873173,0.695421179,neg,ns,0.963394855,Macroh2a1,Macroh2a1_Exon,13,56088313,56088362,56088313,56088314,50,-,CGAGGCAATGTCAGCCTGTACAACTTGCAACTATAACAGGTAAACAAATG,"Exon (Macroh2a1-202/Macroh2a1, exon 6 of 9)",13,56073619,56135631,62013,2,Macroh2a1-201,47269,Macroh2a1-201;Macroh2a1-202;Macroh2a1-203;Macroh2a1-206,Macroh2a1;Macroh2a1;Macroh2a1;Macroh2a1,0;0;-3792;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,9,26914,ENSMUSG00000015937,mapped to different genes,13,56088141,56088314,174,*,174,13,0.58045977,0.887058824,0.074712644,1.25E-08,CpGisland,TRUE,U10,Tr-S
15332,cg11971995,0.00000229,0.00000393,0.58245123,0.560686169,gain,ns,0.00000307,0.00000668,0.46012093,0.645751979,pos,ns,0.003502145,0.001956387,1.79010827,0.074412328,pos,ns,1.128355107,-0.000150195,0.0000673,-2.232386364,0.026303473,neg,ns,0.92791986,Arhgef33,Arhgef33_Exon,17,80381458,80381507,80381458,80381459,50,-,CGCAAGCTCTTTAAAAAGAAGTGAGTAGCCCTTAGACAAGACAGCATTGT,"Exon (Arhgef33-201/Arhgef33, exon 16 of 18)",17,80307407,80388688,81282,1,Arhgef33-201,74051,Arhgef33-201;Arhgef33-202;Arhgef33-206;Arhgef33-211;Arhgef33-207;Arhgef33-209;Arhgef33-210;Arhgef33-212,Arhgef33;Arhgef33;Arhgef33;Arhgef33;Arhgef33;Arhgef33;Arhgef33;Arhgef33,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,5,381112,ENSMUSG00000054901,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16069,cg05387438,0.00000139,0.00000391,0.355702638,0.722305192,gain,ns,0.00000305,0.00000664,0.460067956,0.645789959,pos,ns,0.002082764,0.001945136,1.070754554,0.285112748,pos,ns,0.544983364,-0.0000963,0.0000669,-1.438935656,0.151177645,neg,ns,0.939198799,Zfp407,Zfp407_Intron,18,84351123,84351172,84351123,84351124,50,-,CGGTTTATTGACTGTGATAAAATCTGAAAAGCACCACTGAACATAATTAC,"Intron (Zfp407-201/Zfp407, intron 2 of 2)",18,84128027,84558425,430399,2,Zfp407-201,207253,Zfp407-201;Zfp407-202;Zfp407-203,Zfp407;Zfp407;Zfp407,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,32,240476,ENSMUSG00000048410,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
548,cg08745288,0.00000597,0.000003,1.989165321,0.04756159,gain,ns,0.00000235,0.0000051,0.460046669,0.645805221,pos,ns,0.00391597,0.001494192,2.620793867,0.009204837,pos,ns,2.035983914,-0.000133296,0.0000514,-2.594063992,0.009935283,neg,ns,0.088493432,Dlx6,Dlx6_Exon,6,6865232,6865281,6865280,6865281,50,+,AGCCGAACTGGCAGCTTCCTTAGGACTGACACAAACACAGGTAATTCCCG,"Exon (Dlx6-203/Dlx6, exon 2 of 4)",6,6863334,6867970,4637,1,Dlx6-203,1898,Dlx6-203;Dlx6-202;Dlx6-201;Dlx6-204,Dlx6;Dlx6;Dlx6;Dlx6,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,36,13396,ENSMUSG00000029754,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
10807,cg06079151,-0.0000206,0.00000842,-2.447734127,0.014930155,loss,ns,0.00000658,0.0000143,0.459982015,0.645851576,pos,ns,-0.003788475,0.00419094,-0.903967733,0.366714443,neg,ns,0.435671985,-0.00018993,0.000144126,-1.317801572,0.188543091,neg,ns,0.843420155,G3bp1,G3bp1_fiveUTR,11,55485632,55485681,55485680,55485681,50,+,TTGACCAAAGCAATGGTGATGGAGAAGCCTAGTCCCCTGCTGGTCGGGCG,5' UTR,11,55469685,55504838,35154,1,G3bp1-201,15947,G3bp1-201;G3bp1-202,G3bp1;G3bp1,0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,1,27041,ENSMUSG00000018583,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15235,cg15131439,0.00000142,0.00000456,0.312050391,0.755212007,gain,ns,-0.00000357,0.00000775,-0.459903747,0.645907695,neg,ns,-0.004168765,0.0022711,-1.835570887,0.067378928,neg,ns,1.171475902,0.0000471,0.0000781,0.602799538,0.547082771,pos,ns,0.936249618,Filip1,Filip1_Exon,9,79853628,79853677,79853628,79853629,50,+,CGCTCCTGCTCCAGCAGGTTGGTGAAGTCGTCGCTCTTGTTCATGTAGTC,"Exon (Filip1-205/Filip1, exon 4 of 7)",9,79805094,79977659,172566,2,Filip1-205,123982,Filip1-205;Filip1-201;Filip1-203,Filip1;Filip1;Filip1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,70598,ENSMUSG00000034898,conserved gene and region,9,79853610,79853719,110,*,110,9,0.554545455,1.066810345,0.081818182,0.00000205,CpGisland,TRUE,U15,NS
8586,cg17503855,0.00000564,0.0000102,0.551906395,0.581410127,gain,ns,-0.00000799,0.0000174,-0.459890303,0.645917334,neg,ns,-0.003376406,0.005088321,-0.663559975,0.50746514,neg,ns,0.294593786,0.0000728,0.000174987,0.415851714,0.677806238,pos,ns,0.64663101,Pcdh10,Pcdh10_Exon,3,45383543,45383592,45383543,45383544,50,+,CGAGCAGAGCTCAGCTATCTAGTTGACAGACCTCGCCGAGTTAACAGGTA,"Exon (Pcdh10-203/Pcdh10, exon 2 of 5)",3,45378406,45402645,24240,1,Pcdh10-203,5137,Pcdh10-204;Pcdh10-203;Pcdh10-201;Pcdh10-202;Pcdh10-205,Pcdh10;Pcdh10;Pcdh10;Pcdh10;Pcdh10,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,5,18526,ENSMUSG00000049100,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19365,cg13091892,-0.00000338,0.00000246,-1.370006888,0.171676157,loss,ns,0.00000193,0.00000419,0.459858082,0.645940438,pos,ns,0.001446558,0.001226628,1.179296559,0.239184385,pos,ns,0.621267176,-0.0000522,0.0000422,-1.237457476,0.216853772,neg,ns,0.944971773,Foxp1,Foxp1_Intron,6,99102501,99102550,99102501,99102502,50,+,CGCCTTTCAACTTCTGGGGCATTGTATGATAAACTGGCAGTAAAAATCAT,"Intron (Foxp1-206/Foxp1, intron 3 of 17)",6,98925338,99266515,341178,2,Foxp1-206,163965,Foxp1-206;Foxp1-204;Foxp1-220;Foxp1-201;Foxp1-205;Foxp1-207;Foxp1-208;Foxp1-226;Foxp1-228;Foxp1-221;Foxp1-222;Foxp1-223,Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,87,108655,ENSMUSG00000030067,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2586,cg13422693,0.0000177,0.00000456,3.884026212,0.000125616,gain,ns,0.00000356,0.00000774,0.459805997,0.645977785,pos,ns,0.004767896,0.002268002,2.102245091,0.036338159,pos,ns,1.439637075,-0.000142515,0.000078,-1.82719411,0.068631899,neg,ns,0.823011963,Ece2,Ece2_threeUTR,16,20645075,20645124,20645075,20645076,50,+,CGCACACCAGAGAGCTCTCACGAGGGGCTGGTGACCGACCCCCACAGCCC,3' UTR,16,20629828,20645915,16088,1,Ece2-201,15247,Ece2-201;Ece2-206;Ece2-202;Ece2-204;Ece2-203;Ece2-207;Gm49333-202;Gm49333-201,Ece2;Ece2;Ece2;Ece2;Ece2;Ece2;Gm49333;Gm49333,0;15230;0;0;0;5869;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,1,107522,ENSMUSG00000022842,conserved gene but different region,16,20645055,20645195,141,*,141,11,0.666666667,0.718055556,0.078014184,0.000000149,CpGisland,TRUE,U11,Tr-P
22535,cg04005032,-0.0000122,0.00000575,-2.113144232,0.035387344,loss,ns,0.00000449,0.00000978,0.45968996,0.646060991,pos,ns,0.001063796,0.002864024,0.371434238,0.71056786,pos,ns,0.14839444,-0.0000399,0.0000985,-0.405120348,0.685668473,neg,ns,0.10369115,Osbpl10,Osbpl10_Promoter,9,114978503,114978552,114978551,114978552,50,+,TCTTCCTCCTGTATGAGTCAGGCATTTCCCGGGGATTTGGAGCAGGCACG,Promoter (<=1kb),9,114978569,115232223,253655,1,Osbpl10-207,-17,Osbpl10-207;Rps27rt-201,Osbpl10;Rps27rt,0;4187,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,4,74486,ENSMUSG00000040875,conserved gene but different region,9,114978532,114978921,390,*,390,55,0.797435897,0.913621263,0.141025641,2.97E-51,CpGisland,TRUE,U3,Pr-B
24448,cg27025881,-0.0000104,0.00000266,-3.89578806,0.000119945,loss,ns,0.00000208,0.00000452,0.459568658,0.646147977,pos,ns,0.001663749,0.001324573,1.256064271,0.210038459,pos,ns,0.677701176,-0.000104815,0.0000456,-2.300998504,0.022055016,neg,ns,0.945267112,Col8a2,Col8a2_Exon,4,126311972,126312021,126311972,126311973,50,+,CGGACTCTCTACAATGGCCACAGCGGCTACAACCCAGCCACTGGCATCTT,"Exon (Col8a2-201/Col8a2, exon 4 of 4)",4,126286793,126314330,27538,1,Col8a2-201,25179,Adprhl2-204;Adprhl2-201;Adprhl2-202;Col8a2-201;Col8a2-202,Adprhl2;Adprhl2;Adprhl2;Col8a2;Col8a2,9348;9682;9446;0;11442,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,329941,ENSMUSG00000056174,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11955,cg17507312,0.0000279,0.0000052,5.367737577,0.000000157,gain,yes,0.00000406,0.00000883,0.459505379,0.646193357,pos,ns,0.004046372,0.002587545,1.563787783,0.118887639,pos,ns,0.924863297,-0.0000412,0.000089,-0.462438966,0.644090969,neg,ns,0.096059877,Tbr1,Tbr1_Exon,2,61804146,61804195,61804194,61804195,50,-,CAACTGAATATTTGGCTCATTCAGATCCGAAAAGTCTCCTAGCATCGTCG,"Exon (Tbr1-204/Tbr1, exon 2 of 2)",2,61802930,61804558,1629,1,Tbr1-204,1216,Psmd14-201;Psmd14-208;Psmd14-202;Tbr1-204;Tbr1-201;Tbr1-202;Tbr1-203,Psmd14;Psmd14;Psmd14;Tbr1;Tbr1;Tbr1;Tbr1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,24,27,21375,ENSMUSG00000035033,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18829,cg03598469,-0.0000472,0.0000171,-2.765016795,0.006033007,loss,ns,0.0000133,0.000029,0.459495864,0.646200181,pos,ns,-0.019063676,0.008498135,-2.243277507,0.025584964,neg,ns,1.592015195,0.000584708,0.00029225,2.000711784,0.04629517,pos,ns,0.879375779,Gm9290,Gm9290_Intergenic_downstream,14,97583262,97583311,97583262,97583263,50,+,CGTTACTAGAATTACATTTCTAATGTAAGGATGGGTTATTATTAGCTAAA,Distal Intergenic,14,97665672,97666291,620,2,Gm9290-201,82980,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,10,668659,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22622,cg07379554,-0.00000298,0.00000298,-1.001452646,0.317389075,loss,ns,-0.00000232,0.00000506,-0.459488241,0.646205647,neg,ns,-0.000792861,0.001481208,-0.535280078,0.592839974,neg,ns,0.227062521,0.0000113,0.0000509,0.222602813,0.823991239,pos,ns,0.954298331,Msi1,Msi1_Exon,5,115447113,115447162,115447161,115447162,50,+,TTTACGTTTCATTTTAGAATTCCGTGTAGAGCGGACCCCTCTCCCGAGCG,"Exon (Msi1-208/Msi1, exon 11 of 15)",5,115429599,115455698,26100,1,Msi1-208,17514,Msi1-208;Msi1-209;Msi1-201;Msi1-203;Msi1-205;Msi1-207;Msi1-204;Msi1-202,Msi1;Msi1;Msi1;Msi1;Msi1;Msi1;Msi1;Msi1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,14,17690,ENSMUSG00000054256,conserved gene and region,5,115447002,115447281,280,*,280,18,0.646428571,0.622222222,0.064285714,1.15E-10,CpGisland,TRUE,NA,NRS
21888,cg24657860,-0.00000244,0.00000154,-1.57799392,0.115586855,loss,ns,-0.0000012,0.00000262,-0.459306344,0.646336101,neg,ns,-0.000778941,0.000768051,-1.01417893,0.311288274,neg,ns,0.506837238,0.0000159,0.0000264,0.60060359,0.548542887,pos,ns,0.041274446,Cdkn2c,Cdkn2c_Exon,4,109665056,109665105,109665056,109665057,50,-,CGTTTACATTATTTTGCAACAAACTAGTAAGTTGCTCTAGGTCCCCCCTG,Promoter (<=1kb),4,109660876,109665372,4497,2,Cdkn2c-201,267,Cdkn2c-201;Cdkn2c-202,Cdkn2c;Cdkn2c,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,13,12580,ENSMUSG00000028551,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20865,cg10448436,0.0000127,0.00000365,3.471189881,0.000591703,gain,ns,0.00000285,0.0000062,0.459130809,0.646462002,pos,ns,0.00489025,0.001816926,2.691497056,0.007499356,pos,ns,2.124976022,-0.0000888,0.0000625,-1.421236612,0.156253139,neg,ns,0.083314586,Pax6,Pax6_fiveUTR,2,105674594,105674643,105674594,105674595,50,-,CGTGGGAGAAGTTGGTGAGTGTTTGGTGAGGACTCTTCAGGGCTTTTCAC,5' UTR,2,105668900,105697364,28465,1,Pax6-206,5694,Pax6-206;Pax6-207;Pax6-210;Pax6-214;Pax6-208;Pax6-217;Pax6-226;Pax6-220;Pax6-202;Pax6-205;Pax6-225;Pax6-204;Pax6-201;Pax6-203;Pax6-224,Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,15,78,18508,ENSMUSG00000027168,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
13514,cg12203852,-0.00000518,0.00000158,-3.270222555,0.001195602,loss,ns,0.00000123,0.00000269,0.459122038,0.646468293,pos,ns,-0.000973909,0.000787848,-1.236163641,0.217333557,neg,ns,0.662873212,0.0000272,0.0000271,1.003738503,0.316287503,pos,ns,0.036173148,Arid4a,Arid4a_fiveUTR,12,71015987,71016036,71015987,71015988,50,-,CGAGTCTGCTCAACAGCTTGTTATTTGGTGGATTGTGGCAGTAAATCGGG,Promoter (<=1kb),12,71015990,71098592,82603,1,Arid4a-201,0,Arid4a-201;Arid4a-203;Arid4a-202,Arid4a;Arid4a;Arid4a,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,9,238247,ENSMUSG00000048118,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
11373,cg14902547,-0.000000708,0.00000571,-0.123883591,0.90148773,loss,ns,-0.00000446,0.00000971,-0.45910982,0.646477057,neg,ns,0.007150263,0.002843864,2.514277088,0.012433865,pos,ns,1.905393864,-0.000293211,0.0000978,-2.998063986,0.002936838,neg,ns,0.875154144,Pfn2,Pfn2_threeUTR,3,57842979,57843028,57842979,57842980,50,+,CGAGTTCATATGCTTTCTTGTTAAGTGTGCCTCCGTGGACACCTTCCTTT,3' UTR,3,57841895,57848079,6185,2,Pfn2-201,5051,Pfn2-201;Pfn2-202;Pfn2-204;Pfn2-203,Pfn2;Pfn2;Pfn2;Pfn2,0;0;2850;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,3,18645,ENSMUSG00000027805,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5772,cg01383681,-0.00000515,0.00000196,-2.627749962,0.009022821,loss,ns,0.00000153,0.00000333,0.45905772,0.646514427,pos,ns,0.001354372,0.000976016,1.387653248,0.166239288,pos,ns,0.779266329,-0.0000217,0.0000336,-0.64758845,0.517730457,neg,ns,0.058493374,Wapl,Wapl_fiveUTR,14,34673967,34674016,34674015,34674016,50,-,GTTGAGATGGTTCAGGGCCCTGTTCAAACTCCAGCACTGACCATTCACCG,Promoter (<=1kb),14,34673928,34747983,74056,1,Wapl-201,39,Wapl-201;Wapl-205;Wapl-202,Wapl;Wapl;Wapl,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,6,218914,ENSMUSG00000041408,conserved gene and region,14,34673370,34674481,1112,*,1112,125,0.705035971,0.911840146,0.112410072,1.48E-101,CpGisland,TRUE,U1,Pr-A
6851,cg20315976,0.00000746,0.00000661,1.127727494,0.260307095,gain,ns,-0.00000516,0.0000112,-0.459036285,0.646529803,neg,ns,-0.000922692,0.00329229,-0.280258398,0.779466194,neg,ns,0.108202716,0.000128634,0.000113222,1.136122004,0.25678304,pos,ns,0.429973171,Etv1,Etv1_fiveUTR,12,38781112,38781161,38781112,38781113,50,-,CGACTCTGCTTCTAGAAGCCCAGTCTTCAAAATGAGCTTACCTTTCAGTG,Promoter (<=1kb),12,38781113,38867299,86187,1,Etv1-212,0,Etv1-203;Etv1-201;Etv1-211;Etv1-207;Etv1-206;Etv1-205;Etv1-212;Etv1-208;Etv1-210;Etv1-204;Etv1-202,Etv1;Etv1;Etv1;Etv1;Etv1;Etv1;Etv1;Etv1;Etv1;Etv1;Etv1,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,8,10,14009,ENSMUSG00000004151,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
6861,cg13883905,0.0000106,0.00000631,1.684766673,0.093040009,gain,ns,-0.00000492,0.0000107,-0.459030278,0.646534111,neg,ns,-0.00565173,0.003138245,-1.800920351,0.072687216,neg,ns,1.138541968,0.0000283,0.000107924,0.261806639,0.793644389,pos,ns,0.71448442,Gm19563,Gm19563_Intron,12,38975938,38975987,38975938,38975939,50,+,CGGATTTTCAAGTGTGCTCTTTGTGGATGAAATGCTGTTTCACTTATTAT,"Intron (Gm34662-202/Gm34662-202, intron 1 of 1)",12,38998654,38998923,270,1,Gm19563-201,-22667,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,2,100503118,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6358,cg25294091,-0.0000176,0.00002,-0.881120007,0.378935493,loss,ns,-0.0000156,0.000034,-0.458938595,0.646599877,neg,ns,0.003858901,0.009950085,0.387825873,0.69841106,pos,ns,0.155888892,0.000146749,0.000342183,0.428860764,0.668322417,pos,ns,0.752384431,Pknox2,Pknox2_Intron,9,36985244,36985293,36985244,36985245,50,-,CGTGGAGATCATTAACGAGACTTATTTTTAAATTGTAATTGCAAAATGTA,"Intron (Pknox2-207/Pknox2, intron 1 of 10)",9,36890982,37083309,192328,2,Pknox2-207,98016,Pknox2-207;Pknox2-201;Pknox2-202;Pknox2-203;Pknox2-206;Pknox2-204;Pknox2-205;Pknox2-208;Pknox2-210;Pknox2-209;Pknox2-212;Pknox2-211,Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,47,208076,ENSMUSG00000035934,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21033,cg27594013,-0.00000577,0.00000568,-1.01590901,0.310464939,loss,ns,0.00000443,0.00000965,0.458926441,0.646608596,pos,ns,0.000000514,0.002828108,0.000181573,0.999855242,pos,ns,0.0000629,-0.000170539,0.0000973,-1.753461625,0.080511105,neg,ns,0.909902323,Vrk1,Vrk1_Intergenic_downstream,12,106129575,106129624,106129575,106129576,50,+,CGACTGGGTGCAATGATAAATTATGAATTTTCTAATTTGCTGCATAATGA,Distal Intergenic,12,106030717,106075409,44693,1,Vrk1-204,98858,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,29,37,22367,ENSMUSG00000021115,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3080,cg05464599,-0.00000186,0.00000233,-0.799443211,0.424645585,loss,ns,-0.00000182,0.00000396,-0.458918444,0.646614332,neg,ns,-0.000417787,0.001160885,-0.35988668,0.71917693,neg,ns,0.143164252,-0.0000189,0.0000399,-0.473130225,0.636453245,neg,ns,0.95614993,Lrmda,Lrmda_Intron,14,22577595,22577644,22577643,22577644,50,+,ACTCACTAAGTGACCCTCATCCTTCATGTTGGCAATGCGTGAAGGATGCG,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,557883,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206;Lrmda-202;Lrmda-205,Lrmda;Lrmda;Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10423,cg13094031,-0.00000236,0.00000243,-0.972702613,0.331459489,loss,ns,-0.00000189,0.00000412,-0.458909041,0.646621078,neg,ns,-0.001629273,0.001208433,-1.3482523,0.178561517,neg,ns,0.748212133,-0.0000247,0.0000416,-0.594903382,0.552342033,neg,ns,0.933394087,Npas3,Npas3_Exon,12,53501083,53501132,53501083,53501084,50,+,CGGGGAAAAGAAAACTTTGAGTTCTATGAATTGGCCAAGTTGTTGCCTCT,"Exon (Npas3-204/Npas3, exon 2 of 11)",12,53248157,54069532,821376,1,Npas3-204,252926,Npas3-204;Npas3-201;Npas3-202;Npas3-203,Npas3;Npas3;Npas3;Npas3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,13,103,27386,ENSMUSG00000021010,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24865,cg05402636,-0.00000167,0.00000292,-0.570162922,0.56898019,loss,ns,-0.00000228,0.00000497,-0.458819176,0.646685543,neg,ns,0.001289276,0.001455747,0.885645532,0.376495034,pos,ns,0.424240748,-0.0000576,0.0000501,-1.150705669,0.250740166,neg,ns,0.939241474,Ak2,Ak2_threeUTR,4,129010535,129010584,129010583,129010584,50,+,GTTCTCTCTTGTTTCCTCTCTATTTCAGCCTAGTATCAGAAGGCCAGGCG,3' UTR,4,128993224,129011529,18306,1,Ak2-202,17311,Ak2-201;Ak2-202;Ak2-204,Ak2;Ak2;Ak2,17311;0;17182,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,1,11637,ENSMUSG00000028792,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1714,cg02041991,-0.00000379,0.00000185,-2.051524525,0.041055832,loss,ns,0.00000144,0.00000314,0.4588141,0.646689184,pos,ns,0.000241765,0.000920281,0.262708111,0.792950068,pos,ns,0.100754159,0.00000359,0.0000316,0.113579907,0.909644337,pos,ns,0.955771326,Slc4a7,Slc4a7_threeUTR,14,14762325,14762374,14762325,14762326,50,-,CGAGTTTCATCTCACCTATTTAGGCTTTTTGGTGGTTTGATACTTGACAT,3' UTR,14,14702279,14799940,97662,1,Slc4a7-201,60046,Slc4a7-201;Slc4a7-220;Slc4a7-218;Slc4a7-202;Slc4a7-205;Slc4a7-207;Slc4a7-210;Slc4a7-217;Slc4a7-219;Slc4a7-223;Slc4a7-224;Slc4a7-225;Slc4a7-215;Slc4a7-203;Slc4a7-211;Slc4a7-204;Slc4a7-208;Slc4a7-212;Slc4a7-214;Slc4a7-206;Slc4a7-221;Slc4a7-213,Slc4a7;Slc4a7;Slc4a7;Slc4a7;Slc4a7;Slc4a7;Slc4a7;Slc4a7;Slc4a7;Slc4a7;Slc4a7;Slc4a7;Slc4a7;Slc4a7;Slc4a7;Slc4a7;Slc4a7;Slc4a7;Slc4a7;Slc4a7;Slc4a7;Slc4a7,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;-1393,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,3,218756,ENSMUSG00000021733,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12663,cg03178974,-0.00000176,0.00000137,-1.283108053,0.200412644,loss,ns,-0.00000107,0.00000233,-0.458768007,0.646722251,neg,ns,0.000311208,0.000683929,0.455030121,0.649406073,pos,ns,0.187483654,-0.00000775,0.0000235,-0.329581044,0.741939128,neg,ns,0.9591523,Herc1,Herc1_Exon,9,66461700,66461749,66461700,66461701,50,-,CGGGATTATACCGCTCTGTGCAGGCCCACAGGAATCAAAGTCGGAGAGAA,"Exon (Herc1-201/Herc1, exon 44 of 78)",9,66350526,66508775,158250,1,Herc1-201,111174,Herc1-201;Herc1-204,Herc1;Herc1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,15,15,235439,ENSMUSG00000038664,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1523,cg15822843,-0.0000412,0.00000978,-4.219032027,0.0000323,loss,ns,-0.00000762,0.0000166,-0.458765956,0.646723722,neg,ns,-0.003822249,0.0048652,-0.785630405,0.432684096,neg,ns,0.363829068,-0.000313942,0.000167314,-1.876367128,0.061544228,neg,ns,0.874115301,Gm50093,Gm50093_Intergenic_downstream,18,13409934,13409983,13409934,13409935,50,-,CGAGCCAGGGCAATTTGAGTGAACAACCTGTCCAGGCAATTAATGCCAAG,Distal Intergenic,18,13372089,13372552,464,1,Gm50093-201,37894,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,11,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23226,cg24282701,-0.0000224,0.00000708,-3.158997574,0.001739224,loss,ns,0.00000551,0.000012,0.458745445,0.646738436,pos,ns,0.003451161,0.003522008,0.979884524,0.32790721,pos,ns,0.484249033,-0.000171065,0.000121122,-1.41234285,0.158852114,neg,ns,0.807873823,Eri3,Eri3_Exon,4,117564699,117564748,117564747,117564748,50,-,GAGCAAGAAAAGTGCTGGGCTCCCACTTATTTTCTCCCTGTGGTGTTCCG,"Exon (Eri3-201/Eri3, exon 3 of 9)",4,117550365,117674297,123933,1,Eri3-201,14334,Eri3-201;Eri3-205;Eri3-206,Eri3;Eri3;Eri3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,97,140546,ENSMUSG00000033423,conserved gene and region,4,117564742,117564808,67,*,67,7,0.641791045,1.015151515,0.104477612,0.00000982,CpGisland,TRUE,U10,Tr-S
3390,cg19363788,-0.0000106,0.00000366,-2.894946683,0.004061449,loss,ns,0.00000285,0.00000621,0.458720264,0.646756502,pos,ns,0.001025744,0.001819913,0.563622513,0.573418537,pos,ns,0.241528272,-0.0000556,0.0000626,-0.888366377,0.375032477,neg,ns,0.074394422,Bcl6,Bcl6_fiveUTR,16,23988553,23988602,23988553,23988554,50,+,CGGCAGCAACAGCAATAATCACCTGGTGTCCGGCCTTTCCTAGAAACTTC,Promoter (<=1kb),16,23965052,23988852,23801,2,Bcl6-201,250,Bcl6-201;Gm37419-201,Bcl6;Gm37419,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,18,12053,ENSMUSG00000022508,conserved gene but different region,16,23988496,23988584,89,*,89,14,0.752808989,1.122522523,0.157303371,5.44E-14,CpGisland,TRUE,U1,Pr-A
11966,cg18089106,0.0000106,0.00000267,3.950435343,0.0000966,gain,ns,-0.00000208,0.00000454,-0.458689463,0.646778598,neg,ns,0.00144814,0.001329319,1.089385146,0.276830198,pos,ns,0.557786537,-0.00000849,0.0000457,-0.185740915,0.852769415,neg,ns,0.03079418,Tbr1,Tbr1_Exon,2,61805137,61805186,61805137,61805138,50,+,CGCTACATGGCCCACCACCCGGTCATCACCAACGGAGCCTACAACAGCCT,Promoter (<=1kb),2,61804453,61814114,9662,1,Tbr1-201,684,Psmd14-201;Tbr1-204;Tbr1-201;Tbr1-202;Tbr1-203,Psmd14;Tbr1;Tbr1;Tbr1;Tbr1,0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,24,27,21375,ENSMUSG00000035033,conserved gene and region,2,61804938,61805248,311,*,311,21,0.620578778,0.763323983,0.067524116,9.07E-13,CpGisland,TRUE,U13,Hc-P
26020,cg02150629,-0.0000162,0.00000807,-2.010577709,0.045235786,loss,ns,0.00000629,0.0000137,0.45866693,0.646794764,pos,ns,-0.003708685,0.004017729,-0.923080009,0.356683404,neg,ns,0.447717097,-0.00000696,0.000138169,-0.050391068,0.959843207,neg,ns,0.829786411,Gm2574,Gm2574_Intergenic_downstream,3,143101812,143101861,143101812,143101813,50,-,CGTGGATAAAATGGCAGTTGAATTAAATATGGGCTTGTAATAGACTTCAG,Distal Intergenic,3,142962611,142963612,1002,1,Gm2574-201,139250,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,19,100040053,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
15245,cg18547321,-0.0000037,0.00000309,-1.195811487,0.232684016,loss,ns,-0.00000241,0.00000526,-0.458448682,0.646951348,neg,ns,-0.00119062,0.001539637,-0.773312336,0.43992682,neg,ns,0.35661956,-0.0000182,0.0000529,-0.343889539,0.731162494,neg,ns,0.881552211,Gm18605,Gm18605_Exon,14,79958216,79958265,79958216,79958217,50,+,CGAACAATGTGCTACTAAAGCGTGATTTAATGAGGCTTGGAGGATTTAGT,"Exon (Gm6999-201/Gm6999-201, exon 5 of 5)",14,79947657,79948279,623,1,Gm18605-201,10559,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,6,100417424,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10287,cg03160871,-0.0000174,0.0000107,-1.628605041,0.104412441,loss,ns,0.00000834,0.0000182,0.458433904,0.646961951,pos,ns,0.0070693,0.005328146,1.326784246,0.185556546,pos,ns,0.731523719,-0.000494897,0.000183234,-2.700893662,0.007295551,neg,ns,0.659998442,Arhgap5,Arhgap5_Exon,12,52517442,52517491,52517442,52517443,50,+,CGGATTCCATTTGACCTCCTGAGCACTTTAGAAGCTGAAAAAGTCTATCA,"Exon (Arhgap5-204/Arhgap5, exon 2 of 7)",12,52503972,52545639,41668,1,Arhgap5-203,13470,Arhgap5-203;Arhgap5-204;Arhgap5-202;Arhgap5-201,Arhgap5;Arhgap5;Arhgap5;Arhgap5,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,11855,ENSMUSG00000035133,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23029,cg24603803,0.0000059,0.00000453,1.303362222,0.19341829,gain,ns,-0.00000353,0.00000769,-0.458370778,0.647007245,neg,ns,0.003189318,0.00225366,1.415172811,0.158021588,pos,ns,0.801283579,-0.000103051,0.0000775,-1.329641387,0.184614016,neg,ns,0.052112489,4930455H04Rik,4930455H04Rik_fiveUTR,3,116968518,116968567,116968566,116968567,50,+,CCTTCACCAGCTCAGCTTCTTCCATTCTAGAAGTCAAGGACAGTCAGACG,Promoter (<=1kb),3,116968267,116984406,16140,1,4930455H04Rik-201,251,4930455H04Rik-201;Palmd-201;Palmd-202;Palmd-203;Palmd-204,4930455H04Rik;Palmd;Palmd;Palmd;Palmd,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,1,74654,ENSMUSG00000080907,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
16212,cg03902375,0.0000183,0.00000959,1.91041488,0.057002257,gain,ns,0.00000747,0.0000163,0.458352246,0.647020542,pos,ns,0.004629839,0.004772344,0.970139345,0.33273335,pos,ns,0.477903667,-0.000130522,0.000164121,-0.795279585,0.427059372,neg,ns,0.472778794,Vsx2,Vsx2_Exon,12,84593096,84593145,84593144,84593145,50,+,TTTCTAAACCCGAATACCAACAATTCTTTCTAGGGATGCACAAAAAGTCG,"Exon (Vsx2-201/Vsx2, exon 5 of 5)",12,84569762,84595457,25696,1,Vsx2-201,23334,Vsx2-201;Vsx2-202,Vsx2;Vsx2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,20,12677,ENSMUSG00000021239,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11203,cg00597285,0.0000112,0.00000269,4.174243039,0.0000389,gain,ns,0.0000021,0.00000457,0.458277732,0.647074009,pos,ns,0.00219302,0.001340114,1.636442757,0.102761737,pos,ns,0.988168565,-0.0000823,0.0000461,-1.786687826,0.074965023,neg,ns,0.033269173,Satb2,Satb2_fiveUTR,1,56971753,56971802,56971801,56971802,50,-,CGTTGAGTCATCAGGCAAAGTGAGTCCTTTTGGGTTGTCCTCGGTTTCCG,Promoter (<=1kb),1,56793981,56972502,178522,2,Satb2-201,700,Satb2-201;Satb2-202;Satb2-205;Satb2-203;Satb2-204,Satb2;Satb2;Satb2;Satb2;Satb2,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,9,33,212712,ENSMUSG00000038331,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
19735,cg21374717,-0.00000421,0.00000789,-0.532774832,0.594571152,loss,ns,0.00000614,0.0000134,0.458268007,0.647080987,pos,ns,-0.007230516,0.003928423,-1.840564555,0.066641032,neg,ns,1.176258286,0.0000326,0.000135098,0.241566627,0.809275694,pos,ns,0.790098469,Scn8a,Scn8a_Exon,15,100974617,100974666,100974617,100974618,50,-,CGAGAAGGTGTTTAAGTCAGAGTCAGAAGATGGCATGAGAAGGAAGGCCT,"Exon (Scn8a-212/Scn8a, exon 11 of 15)",15,100870645,101011064,140420,1,Scn8a-212,103972,Scn8a-212;Scn8a-201;Scn8a-204;Scn8a-213;Scn8a-203;Scn8a-205;Scn8a-208;Scn8a-219;Scn8a-217;Scn8a-220,Scn8a;Scn8a;Scn8a;Scn8a;Scn8a;Scn8a;Scn8a;Scn8a;Scn8a;Scn8a,0;0;0;0;0;0;0;0;6021;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,18,24,20273,ENSMUSG00000023033,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2315,cg13546240,0.00000679,0.00000298,2.279731848,0.023302701,gain,ns,-0.00000232,0.00000506,-0.458241268,0.647100173,neg,ns,0.002436826,0.001483395,1.64273564,0.101451543,pos,ns,0.993741345,-0.0000577,0.000051,-1.130562173,0.259113342,neg,ns,0.039625443,Irf2bp1,Irf2bp1_Intergenic_downstream,7,19012336,19012385,19012384,19012385,50,+,GGGAGACTGAGGGCCTTTCTCTCGGCCCCAGTTGTTTTTTCCAGGAACCG,Downstream (<1kb),7,19004044,19006777,2734,1,Irf2bp1-201,8292,Foxa3-201,Foxa3,11153,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,1,4,272359,ENSMUSG00000044030,conserved gene and region,7,19012168,19012532,365,*,365,29,0.706849315,0.655133998,0.079452055,2.09E-19,CpGisland,TRUE,U6,En-Sp
8988,cg10137534,-0.00000272,0.00000219,-1.241544244,0.215343332,loss,ns,0.00000171,0.00000373,0.457991301,0.647279551,pos,ns,0.001440921,0.001091392,1.320259645,0.187722317,pos,ns,0.726484095,-0.0000545,0.0000375,-1.453195706,0.147180942,neg,ns,0.076457202,Trim8,Trim8_Promoter,19,46501393,46501442,46501393,46501394,50,+,CGGGAGCCGAGCCTCCTGTTCATTAGCAGTTGAGAAAAATTCCTTTCTAG,Promoter (<=1kb),19,46501702,46516848,15147,1,Trim8-201,-260,Trim8-201,Trim8,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,21,93679,ENSMUSG00000025034,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
9122,cg15821372,-0.0000184,0.0000191,-0.962168896,0.336714673,loss,ns,0.0000149,0.0000325,0.457927162,0.647325581,pos,ns,-0.008212307,0.009527045,-0.861999405,0.389354146,neg,ns,0.409655196,-0.000324046,0.000327634,-0.989046857,0.323411553,neg,ns,0.564500031,Gm13469,Gm13469_Intergenic_upstream,2,47039451,47039500,47039451,47039452,50,+,CGTGTTACTGGCACAAAATAATTGTCCATTTAAGGAGCCATTTGAAATAA,Distal Intergenic,2,46406220,46406569,350,2,Gm13469-201,-632882,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,20,27,383690,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6546,cg06529970,-0.0000149,0.0000054,-2.761230861,0.006101664,loss,ns,-0.0000042,0.00000917,-0.4579157,0.647333807,neg,ns,-0.00515828,0.002686605,-1.919999399,0.055775423,neg,ns,1.253557124,0.000215832,0.0000924,2.336038767,0.020126413,pos,ns,0.827302521,Zfp536,Zfp536_Intron,7,37661023,37661072,37661023,37661024,50,-,CGAACGGCTGCTGTGTGCCAGTTCACTGAACCATGGCTTGCTAAAGAGAT,"Intron (Zfp536-202/Zfp536, intron 3 of 6)",7,37479104,37769624,290521,2,Zfp536-202,108552,Zfp536-202;Zfp536-201;Zfp536-203;Zfp536-206;Zfp536-209;Zfp536-208,Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,73,112,243937,ENSMUSG00000043456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13171,cg05099709,0.00000382,0.00000629,0.606647706,0.544528742,gain,ns,-0.0000049,0.0000107,-0.457886151,0.647355013,neg,ns,-0.004523027,0.003132228,-1.444028753,0.149740756,neg,ns,0.824659979,-0.0000175,0.000107717,-0.162690695,0.870867972,neg,ns,0.706357748,Tcf4,Tcf4_Intron,18,69632382,69632431,69632382,69632383,50,-,CGCTGCCTGCTTCAAAATGGAGGCAGGAAGGTATCCATTTTCATCAAGAG,"Intron (Tcf4-201/Tcf4, intron 9 of 20)",18,69344146,69684343,340198,1,Tcf4-201,288236,Tcf4-201;Tcf4-207;Tcf4-240;Tcf4-254;Tcf4-246;Tcf4-206;Tcf4-202;Tcf4-257;Tcf4-232;Tcf4-248;Tcf4-231;Tcf4-205;Tcf4-253;Tcf4-238;Tcf4-249;Tcf4-219;Tcf4-227;Tcf4-250;Tcf4-229;Tcf4-260;Tcf4-226;Tcf4-216;Tcf4-256;Tcf4-230;Tcf4-221;Tcf4-234;Tcf4-258;Tcf4-217;Tcf4-247;Tcf4-252;Tcf4-218;Tcf4-243;Tcf4-237;Tcf4-239;Tcf4-262;Tcf4-223;Tcf4-212;Tcf4-204;Tcf4-225;Tcf4-222;Tcf4-261;Tcf4-255;Tcf4-203;Tcf4-236;Tcf4-228;Tcf4-220;Tcf4-242;Tcf4-213;Tcf4-251,Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,42,66,21413,ENSMUSG00000053477,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12152,cg19280586,0.0000381,0.00000603,6.310531679,9.60E-10,gain,yes,0.00000469,0.0000103,0.457853195,0.647378666,pos,ns,0.007183922,0.003003139,2.392138215,0.017345956,pos,ns,1.760801755,-0.0000316,0.000103278,-0.305820364,0.759946688,neg,ns,0.177859131,Skor1,Skor1_Intron,9,63139876,63139925,63139876,63139877,50,-,CGTTTGCTGGGCTCGCTTGCCATTCTGAGGCTAATCAGAGTATACAAAGC,"Intron (Skor1-203/Skor1, intron 7 of 8)",9,63138170,63147011,8842,2,Skor1-203,7086,Skor1-203;Skor1-202;Skor1-201,Skor1;Skor1;Skor1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,15,207667,ENSMUSG00000022245,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
16629,cg18306442,0.00001,0.00000419,2.394160329,0.017252387,gain,ns,-0.00000326,0.00000713,-0.457830632,0.647394859,neg,ns,-0.002200098,0.002087764,-1.05380628,0.292792272,neg,ns,0.53344039,0.0000609,0.0000718,0.848695846,0.396705426,pos,ns,0.819851614,Bcas3,Bcas3_Intron,11,85668065,85668114,85668113,85668114,50,-,GGAGGTTAGACTGGGGCTAGCCAGACTGCTCCACATAGACTTCCGATTCG,"Intron (Bcas3-205/Bcas3, intron 24 of 27)",11,85353167,85826058,472892,1,Bcas3-205,314898,Bcas3-205;Bcas3-206;Bcas3-201;Bcas3-202;Bcas3-216;Bcas3-212;Bcas3-203;Bcas3-207,Bcas3;Bcas3;Bcas3;Bcas3;Bcas3;Bcas3;Bcas3;Bcas3,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,24,192197,ENSMUSG00000059439,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
4862,cg06786029,-0.00000865,0.0000025,-3.458876088,0.00061836,loss,ns,0.00000194,0.00000425,0.457669583,0.647510448,pos,ns,-0.000801838,0.001244396,-0.644358728,0.519819331,neg,ns,0.284147574,0.0000511,0.0000428,1.194042657,0.233374154,pos,ns,0.928457732,Zbtb44,Zbtb44_Exon,9,31066787,31066836,31066835,31066836,50,-,TCCTTCGGGGAATATAAACACCACATGAGGGTTTCCCGGCACATTATCCG,"Exon (Zbtb44-206/Zbtb44, exon 4 of 5)",9,31030644,31070233,39590,1,Zbtb44-205,36143,Zbtb44-205;Zbtb44-201;Zbtb44-206;Zbtb44-202;Zbtb44-204,Zbtb44;Zbtb44;Zbtb44;Zbtb44;Zbtb44,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,15,235132,ENSMUSG00000047412,conserved gene and region,9,31066713,31066901,189,*,189,12,0.486772487,1.07641196,0.063492064,0.00000032,CpGisland,TRUE,U10,Tr-S
22908,cg00743491,-0.00000149,0.00000329,-0.452823843,0.650992344,loss,ns,-0.00000256,0.00000558,-0.45762229,0.647544393,neg,ns,-0.002883017,0.001635732,-1.7625236,0.078966267,neg,ns,1.102558394,0.0000477,0.0000563,0.847165826,0.397556247,pos,ns,0.906159167,Lrrc41,Lrrc41_Exon,4,116092910,116092959,116092910,116092911,50,-,CGGGCCCTGTCAGGCCAGGCTGGATGTCGCCTCCGTGCCCTGCATCTCAG,"Exon (Lrrc41-201/Lrrc41, exon 5 of 10)",4,116075269,116097043,21775,1,Lrrc41-201,17641,Lrrc41-201;Lrrc41-202;Lrrc41-204;Lrrc41-203;Rad54l-204;Rad54l-202;Rad54l-201,Lrrc41;Lrrc41;Lrrc41;Lrrc41;Rad54l;Rad54l;Rad54l,0;0;16025;0;7099;30726;30700,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,9,230654,ENSMUSG00000028703,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4259,cg19489586,0.00000968,0.00000259,3.737727474,0.000221063,gain,ns,0.00000201,0.0000044,0.457509509,0.647625345,pos,ns,0.003643708,0.001289386,2.825925279,0.005020483,pos,ns,2.299254527,-0.0000811,0.0000443,-1.828539889,0.068429314,neg,ns,0.048174948,Rfx3,Rfx3_fiveUTR,19,28010958,28011007,28010958,28010959,50,-,CGAAGAATATTCACCTTGGCTGTGGATTATTGTGGTGTTGTTGGTGGGTG,Promoter (<=1kb),19,27761727,28011048,249322,2,Rfx3-201,41,Rfx3-201;Rfx3-208;Rfx3-204;Rfx3-205;Rfx3-207,Rfx3;Rfx3;Rfx3;Rfx3;Rfx3,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,15,19726,ENSMUSG00000040929,conserved gene but different region,19,28010595,28010959,365,*,365,45,0.717808219,0.984889369,0.123287671,5.85E-39,CpGisland,TRUE,U1,Pr-A
15257,cg10548563,-0.00000983,0.00000516,-1.906038258,0.057569929,loss,ns,-0.00000401,0.00000876,-0.457409672,0.647697011,neg,ns,-0.005971524,0.002566149,-2.327037473,0.020607174,neg,ns,1.685981558,0.0000086,0.0000882,0.09741527,0.922459571,pos,ns,0.868418563,Lrrtm4,Lrrtm4_Exon,6,80023105,80023154,80023105,80023106,50,-,CGGTTAATGGATCTGGGCCCTGCACATATACCATCTCTGGCTCCAGGGAA,"Exon (Lrrtm4-208/Lrrtm4, exon 2 of 3)",6,80018877,80810143,791267,1,Lrrtm4-208,4228,Lrrtm4-208;Lrrtm4-204;Lrrtm4-202;Lrrtm4-205;Lrrtm4-203;Lrrtm4-206;Lrrtm4-207;Lrrtm4-201,Lrrtm4;Lrrtm4;Lrrtm4;Lrrtm4;Lrrtm4;Lrrtm4;Lrrtm4;Lrrtm4,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,4,243499,ENSMUSG00000052581,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14923,cg12274258,0.000095,0.0000109,8.680926836,2.27E-16,gain,yes,0.0000085,0.0000186,0.457396853,0.647706213,pos,ns,0.00124422,0.005444681,0.228520198,0.819392526,pos,ns,0.086508002,0.000158342,0.000187242,0.845652502,0.398398871,pos,ns,0.807257751,Nr2f1,Nr2f1_Intron,13,78168366,78168415,78168414,78168415,50,-,CCCCCAAATTTCATGGGTCACCAAACTGCAACAATCAATGTTTTATCACG,"Intron (Gm38604-201/Gm38604-201, intron 2 of 3)",13,78189872,78190443,572,2,Nr2f1-204,22077,Fam172a-203;Fam172a-201;Fam172a-202;Fam172a-205,Fam172a;Fam172a;Fam172a;Fam172a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,55,13865,ENSMUSG00000069171,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23623,cg18307857,0.000057,0.00000861,6.617999559,1.60E-10,gain,yes,-0.00000669,0.0000146,-0.457209733,0.647840541,neg,ns,0.016094292,0.004287156,3.754071985,0.000207715,pos,ns,3.682531609,-0.000241557,0.000147435,-1.638399072,0.102352986,neg,ns,0.323696899,Gm3508,Gm3508_Exon,1,119329162,119329211,119329162,119329163,50,-,CGGCCCCATAAAGGGTTTCTGTTCGGGCTGGAGGACTCATTGTCAAAAAA,"Exon (Gm29455-202/Gm29455-202, exon 1 of 2)",1,119241962,119242753,792,2,Gm3508-201,-86458,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,8,100041778,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1789,cg24977387,-0.00000766,0.0000028,-2.734315131,0.006610506,loss,ns,0.00000218,0.00000476,0.457043212,0.647960092,pos,ns,-0.000423823,0.001394944,-0.303827954,0.761462794,neg,ns,0.118351312,-0.0000104,0.000048,-0.216088428,0.829060938,neg,ns,0.946953857,Foxp2,Foxp2_Intron,6,15201985,15202034,15201985,15201986,50,-,CGGCTGGAATTTTTATGTTAAGTTCACATTATTTTATATTCATAGCAAGC,"Intron (Foxp2-207/Foxp2, intron 4 of 18)",6,14901349,15441977,540629,1,Foxp2-207,300636,Foxp2-207;Foxp2-213;Foxp2-208;Foxp2-211;Foxp2-203;Foxp2-216;Foxp2-205;Foxp2-204;Foxp2-201;Foxp2-210;Foxp2-214;Foxp2-212;Foxp2-209;Foxp2-202,Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,38,65,114142,ENSMUSG00000029563,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14609,cg03370680,0.000046,0.000012,3.843712022,0.000147043,gain,ns,-0.00000929,0.0000204,-0.456677272,0.648222843,neg,ns,0.005739871,0.005961927,0.962754334,0.336421196,pos,ns,0.473116649,-0.000305689,0.00020503,-1.490948766,0.136991764,neg,ns,0.6395275,Mctp1,Mctp1_Exon,13,76825184,76825233,76825232,76825233,50,+,CTGTCATGTCCTTTTCCCGCAGATTCAAAATGGTGAACAGAAAGCCTACG,Promoter (<=1kb),13,76825207,76828076,2870,1,Mctp1-208,0,Mctp1-204;Mctp1-201;Mctp1-206;Mctp1-208;Mctp1-203;Mctp1-207,Mctp1;Mctp1;Mctp1;Mctp1;Mctp1;Mctp1,0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,20,78771,ENSMUSG00000021596,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27456,cg10704133,-0.00000146,0.00000102,-1.435305353,0.15220827,loss,ns,0.00000079,0.00000173,0.45657613,0.648295473,pos,ns,0.000430035,0.000506687,0.848718279,0.396692959,pos,ns,0.401545508,-0.00000844,0.0000174,-0.484602155,0.628300805,neg,ns,0.974883717,Pbx1,Pbx1_Intron,1,168269197,168269246,168269245,168269246,50,+,AGCCAAGTCGCAGTAAATTAAACCACATCTGGAGCAGATGAGGGCTTTCG,"Intron (Pbx1-208/Pbx1, intron 2 of 7)",1,168119364,168432270,312907,2,Pbx1-208,163024,Pbx1-208;Pbx1-205;Pbx1-206;Pbx1-201;Pbx1-202;Pbx1-204,Pbx1;Pbx1;Pbx1;Pbx1;Pbx1;Pbx1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,84,18514,ENSMUSG00000052534,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11038,cg01022174,0.0000375,0.0000141,2.65102191,0.008437122,gain,ns,-0.000011,0.000024,-0.456330719,0.648471715,neg,ns,0.017419224,0.007035423,2.475931179,0.013822735,pos,ns,1.859406018,-0.000637659,0.000241948,-2.635523612,0.00882324,neg,ns,0.598815687,Gm28900,Gm28900_Intergenic_upstream,1,56395991,56396040,56396039,56396040,50,-,GTTAAAAGGCAAATACACAGATTGATCATTTTTCTTTCCAGGACTGTACG,Distal Intergenic,1,56451407,56451562,156,1,Gm28900-201,-55416,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,12,102635907,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26784,cg14696689,-0.0000258,0.0000028,-9.214269143,4.90E-18,loss,yes,-0.00000217,0.00000475,-0.45628425,0.64850509,neg,ns,-0.002188351,0.001392475,-1.571554777,0.117073902,neg,ns,0.931539907,-0.0000901,0.0000479,-1.881095314,0.06089603,neg,ns,0.940755679,Kdm5c,Kdm5c_Exon,X,152242049,152242098,152242049,152242050,50,+,CGTCCATTTGATAATGAGGAGAAGGACAAGGAATACAAACCCCACAGCAT,"Exon (Kdm5c-202/Kdm5c, exon 5 of 26)",20,152233020,152273768,40749,1,Kdm5c-202,9029,Kdm5c-202;Kdm5c-203;Kdm5c-204;Kdm5c-201,Kdm5c;Kdm5c;Kdm5c;Kdm5c,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,7,20591,ENSMUSG00000025332,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4325,cg06350135,0.0000121,0.00000543,2.234337853,0.026173455,gain,ns,-0.00000421,0.00000923,-0.456274867,0.648511828,neg,ns,-0.0000648,0.002703152,-0.023967727,0.980893771,neg,ns,0.008378023,-0.0000516,0.000093,-0.555025748,0.579277302,neg,ns,0.838267379,Samd4b,Samd4b_threeUTR,7,28400047,28400096,28400095,28400096,50,-,GATGAGTGTGCAAGAGGTACATAAATAAACCTGACACCCCACCCAGCCCG,3' UTR,7,28399522,28436191,36670,2,Samd4b-204,36095,Paf1-201;Paf1-202;Paf1-204;Paf1-203;Paf1-210;Paf1-209;Paf1-207;Paf1-205;Paf1-208;Samd4b-204;Samd4b-201;Samd4b-203;Samd4b-202,Paf1;Paf1;Paf1;Paf1;Paf1;Paf1;Paf1;Paf1;Paf1;Samd4b;Samd4b;Samd4b;Samd4b,7096;7006;6886;6589;5284;4622;4222;3396;1613;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,9,11,233033,ENSMUSG00000109336,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25248,cg13679010,0.00000791,0.00000266,2.978309535,0.003127199,gain,ns,-0.00000206,0.00000451,-0.456255006,0.648526093,neg,ns,0.001541006,0.001321998,1.165664712,0.244646116,pos,ns,0.611461676,-0.0000498,0.0000455,-1.094493212,0.274588392,neg,ns,0.050422623,Cxxc4,Cxxc4_Promoter,3,134236227,134236276,134236275,134236276,50,-,GCCTCTTGTTCCCCGTGTAATTTGCAGCCAATCATCAGTAGGTGTCCACG,Promoter (<=1kb),3,134236484,134259620,23137,1,Cxxc4-204,-257,Cxxc4-204;Cxxc4-203;Cxxc4-202;Cxxc4-201;Cxxc4-205,Cxxc4;Cxxc4;Cxxc4;Cxxc4;Cxxc4,0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,1,20,319478,ENSMUSG00000044365,mapped to different genes,3,134236131,134236393,263,*,263,34,0.72243346,1.012798732,0.129277567,2.47E-30,CpGisland,TRUE,U3,Pr-B
17198,cg19380050,0.00000191,0.0000044,0.435469874,0.663524445,gain,ns,-0.00000341,0.00000747,-0.456245076,0.648533225,neg,ns,-0.004896647,0.002188226,-2.237725211,0.025949099,neg,ns,1.585877725,0.000166127,0.0000753,2.207585048,0.028005338,pos,ns,0.919874385,Clk2,Clk2_Exon,3,89169677,89169726,89169677,89169678,50,-,CGTCGGGGACTGGCTACAAGAGCGATGTACAAGCCAAATCGTAACAATCC,"Exon (Clk2-202/Clk2, exon 4 of 13)",3,89164795,89176921,12127,1,Clk2-202,4882,Clk2-202;Clk2-210;Clk2-201;Clk2-209;Clk2-207;Clk2-203;Clk2-204;Clk2-206;Clk2-211;Clk2-205,Clk2;Clk2;Clk2;Clk2;Clk2;Clk2;Clk2;Clk2;Clk2;Clk2,0;4860;0;0;0;0;0;0;0;-4229,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,10,12748,ENSMUSG00000068917,conserved gene and region,3,89169381,89169717,337,*,337,23,0.637982196,0.717685185,0.068249258,4.95E-14,CpGisland,TRUE,U10,Tr-S
26342,cg22862899,0.0000751,0.00000903,8.320514294,2.82E-15,gain,yes,0.000007,0.0000153,0.456230762,0.648543505,pos,ns,0.004211606,0.004492482,0.937478556,0.349242239,pos,ns,0.456873237,0.000238763,0.000154496,1.54543129,0.123262187,pos,ns,0.286063823,Kiz,Kiz_Intron,2,146833398,146833447,146833446,146833447,50,+,CAGATGTTGTTTGGCTGAAGAGCAGCTGAATCCCCTCTCTGGCAGCCGCG,"Intron (Gm14114-201/Gm14114-201, intron 1 of 1)",2,146855864,146970097,114234,1,Kiz-201,-22417,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,29,228730,ENSMUSG00000074749,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
2526,cg13272856,-0.00000151,0.00000127,-1.183994565,0.23732226,loss,ns,-0.000000987,0.00000216,-0.45619568,0.648568702,neg,ns,-0.000681446,0.000633687,-1.075366052,0.28304711,neg,ns,0.548141274,0.000000723,0.0000218,0.033178175,0.973553854,pos,ns,0.960137365,Parl,Parl_fiveUTR,16,20293317,20293366,20293365,20293366,50,+,TCCCTTGAATGGTTAAAACGTGTAAGCTAACACAAACCTGTCACAGTCCG,5' UTR,16,20279818,20301813,21996,2,Parl-208,8447,Parl-208;Parl-205;Parl-201;Parl-212;Parl-213;Parl-202;Parl-206;Parl-204;Parl-207;Parl-209,Parl;Parl;Parl;Parl;Parl;Parl;Parl;Parl;Parl;Parl,0;0;0;0;0;0;0;0;0;8995,TRUE,FALSE,FALSE,TRUE,TRUE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,2,381038,ENSMUSG00000033918,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7684,cg26632664,-0.00000149,0.00000267,-0.556552895,0.57823448,loss,ns,0.00000207,0.00000453,0.456138559,0.648609729,pos,ns,0.000106737,0.001328087,0.080369002,0.935995639,pos,ns,0.028726175,-0.0000414,0.0000457,-0.907339995,0.364931792,neg,ns,0.954447917,Npr2,Npr2_Exon,4,43643349,43643398,43643349,43643350,50,-,CGGCTCGCTCATGACAGCCCATGGGAAATACCAGATCTTTGCCAACACCG,"Exon (Npr2-201/Npr2, exon 9 of 22)",4,43631935,43651244,19310,1,Npr2-201,11414,Npr2-201;Npr2-202;Npr2-204;Npr2-208;Npr2-203;Npr2-205;Npr2-209;Npr2-206;Npr2-207;Npr2-210,Npr2;Npr2;Npr2;Npr2;Npr2;Npr2;Npr2;Npr2;Npr2;Npr2,0;0;0;2094;0;0;0;0;-3799;-4607,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,Exon,10,10,230103,ENSMUSG00000028469,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21518,cg19486467,-0.0000154,0.00000779,-1.98115386,0.048457386,loss,ns,0.00000603,0.0000132,0.455949115,0.648745804,pos,ns,-0.00199432,0.003875737,-0.514565302,0.607223472,neg,ns,0.21665145,-0.0000147,0.000133286,-0.110630972,0.911980574,neg,ns,0.858446224,Zfhx3,Zfhx3_Intron,8,108086789,108086838,108086837,108086838,50,-,TTAAAACTGACAGTTAAGGACGTTTCTCTCTTTATTCCTTCTGATACACG,"Intron (Zfhx3-204/Zfhx3, intron 1 of 15)",8,107942644,108961630,1018987,1,Zfhx3-204,144145,Zfhx3-204;Zfhx3-207,Zfhx3;Zfhx3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,114,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15659,cg27240008,-0.00000246,0.00000385,-0.637814352,0.524065362,loss,ns,-0.00000298,0.00000654,-0.455844837,0.648820711,neg,ns,-0.000557804,0.00191598,-0.291132689,0.771144533,neg,ns,0.112864216,-0.0000301,0.0000659,-0.457526348,0.647613259,neg,ns,0.824601798,Mbp,Mbp_Exon,18,82554655,82554704,82554703,82554704,50,-,GGCTTCCTCCCAAGGCACAGAGACACGGGCATCCTTGACTCCATCGGGCG,"Exon (Mbp-205/Mbp, exon 4 of 4)",18,82475146,82558703,83558,1,Mbp-205,79509,Mbp-205;Mbp-201;Mbp-213;Mbp-215;Mbp-212;Mbp-204;Mbp-211;Mbp-209;Mbp-216;Mbp-202;Mbp-203;Mbp-206;Mbp-207;Mbp-210,Mbp;Mbp;Mbp;Mbp;Mbp;Mbp;Mbp;Mbp;Mbp;Mbp;Mbp;Mbp;Mbp;Mbp,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,17196,ENSMUSG00000041607,conserved gene and region,18,82554680,82554790,111,*,111,9,0.621621622,0.870209059,0.081081081,0.00000221,CpGisland,TRUE,U11,Tr-P
21495,cg12526457,0.0000175,0.0000161,1.0849137,0.278802868,gain,ns,0.0000125,0.0000274,0.45577967,0.648867525,pos,ns,0.004970066,0.008034601,0.618582869,0.536645438,pos,ns,0.270312559,0.00000998,0.000276309,0.036123604,0.971207051,pos,ns,0.638340907,Bcl11b,Bcl11b_Intron,12,107970910,107970959,107970958,107970959,50,+,TTTAATATTCAAATAAGCGCTTGCCAAGTGATTAACAAAGAACAAGCACG,"Intron (Bcl11b-201/Bcl11b, intron 2 of 3)",12,107910403,108003602,93200,2,Bcl11b-201,32643,Bcl11b-201;Bcl11b-202;Bcl11b-203,Bcl11b;Bcl11b;Bcl11b,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,39,58208,ENSMUSG00000048251,conserved gene and region,12,107970889,107971067,179,*,179,11,0.441340782,1.309175532,0.061452514,0.00000161,CpGisland,TRUE,NA,NRS
15900,cg19384536,0.00000659,0.00000324,2.035080804,0.042693186,gain,ns,-0.00000251,0.00000551,-0.455665955,0.648949217,neg,ns,-0.003167863,0.001612875,-1.964109251,0.050410658,neg,ns,1.297477635,0.0000914,0.0000555,1.64846456,0.100270423,pos,ns,0.937724916,Mta3,Mta3_threeUTR,17,83792726,83792775,83792726,83792727,50,+,CGTTTGTTGCTATTAATTATGCTGCCATTAGGGCAGAATGTAAGATGCTT,3' UTR,17,83706163,83792873,86711,1,Mta3-203,86563,Mta3-203;Mta3-202;Mta3-204;Mta3-208;Mta3-201;Mta3-207;Mta3-206;Mta3-205,Mta3;Mta3;Mta3;Mta3;Mta3;Mta3;Mta3;Mta3,0;0;0;0;0;0;0;-2647,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,2,116871,ENSMUSG00000055817,conserved gene and region,17,83792546,83792727,182,*,182,16,0.60989011,0.951633987,0.087912088,1.29E-11,CpGisland,TRUE,U10,Tr-S
25863,cg26472617,0.0000167,0.00000319,5.245500169,0.000000289,gain,yes,0.00000247,0.00000541,0.455641065,0.648967098,pos,ns,0.006253291,0.001585456,3.94415798,0.0000991,pos,ns,4.004042961,-0.000156109,0.0000545,-2.863146601,0.004480383,neg,ns,0.07671626,Pax7,Pax7_Intron,4,139824760,139824809,139824808,139824809,50,-,GCAGGTCCTTGTACACACAATCAAAACAGCTTCCTCCAGTGTAGCAAACG,"Intron (Pax7-201/Pax7, intron 4 of 8)",4,139737062,139833528,96467,2,Pax7-201,8719,Pax7-201;Pax7-202,Pax7;Pax7,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,27,18509,ENSMUSG00000028736,conserved gene and region,4,139824796,139824926,131,*,131,11,0.564885496,1.200833333,0.083969466,6.93E-08,CpGisland,TRUE,U13,Hc-P
12137,cg21624558,-0.0000105,0.00000284,-3.707704222,0.000247713,loss,ns,0.0000022,0.00000482,0.455529799,0.649047036,pos,ns,0.005962707,0.001412477,4.221455636,0.0000319,pos,ns,4.495839255,-0.000166502,0.0000486,-3.427732775,0.000690874,neg,ns,0.93668153,Ino80d,Ino80d_fiveUTR,1,63086311,63086360,63086359,63086360,50,-,GACCTTCACCTCATCTATAGGATCATTCTTTTTCTTCCTCTCTTTTTTCG,5' UTR,1,62958418,63091929,133512,2,Ino80d-202,5569,Ino80d-202;Ino80d-205;Ino80d-206;Ino80d-201;Ino80d-203;Ino80d-204,Ino80d;Ino80d;Ino80d;Ino80d;Ino80d;Ino80d,0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,9,12,227195,ENSMUSG00000040865,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20831,cg17415555,0.0000103,0.00000236,4.371450912,0.0000169,gain,ns,0.00000183,0.00000401,0.455463128,0.649094937,pos,ns,0.002236904,0.001176116,1.90194247,0.058105445,pos,ns,1.235783166,-0.0000284,0.0000404,-0.703379536,0.482347185,neg,ns,0.042283477,Tmtc2,Tmtc2_Exon,10,105573677,105573726,105573725,105573726,50,-,AGCAGAAATCCGCACTCAGGGTGTTGAGATACAAGGCGAGCCCCAGAGCG,Promoter (<=1kb),10,105187663,105574435,386773,2,Tmtc2-201,709,Tmtc2-201;Tmtc2-205,Tmtc2;Tmtc2,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,4,278279,ENSMUSG00000036019,conserved gene and region,10,105573441,105574130,690,*,690,60,0.647826087,0.894322993,0.086956522,6.90E-42,CpGisland,TRUE,U1,Pr-A
7177,cg21330747,-0.00000469,0.00000164,-2.851213473,0.004647484,loss,ns,-0.00000127,0.00000279,-0.455413749,0.649130415,neg,ns,0.000661261,0.000818335,0.808056513,0.419677685,pos,ns,0.377084122,-0.0000183,0.0000281,-0.651057836,0.51549145,neg,ns,0.068918154,Jade1,Jade1_fiveUTR,3,41563697,41563746,41563697,41563698,50,-,CGGGAGTAATTTAATGCCGAAGGTCGCTGCCTAGTGGAAATAATATAATA,5' UTR,3,41555731,41616864,61134,1,Jade1-201,7966,Jade1-201;Jade1-210;Jade1-214;Jade1-202;Jade1-209;Jade1-204;Jade1-203;Jade1-211;Jade1-206,Jade1;Jade1;Jade1;Jade1;Jade1;Jade1;Jade1;Jade1;Jade1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,16,269424,ENSMUSG00000025764,conserved gene and region,3,41563390,41564023,634,*,634,81,0.665615142,1.172679942,0.127760252,3.62E-71,CpGisland,TRUE,U1,Pr-A
25567,cg12204071,0.0000363,0.00000886,4.094114318,0.0000541,gain,ns,0.00000685,0.0000151,0.455340229,0.649183239,pos,ns,0.014758355,0.00440972,3.34677867,0.000918207,pos,ns,3.037059295,-0.000379422,0.00015165,-2.501962144,0.01286573,neg,ns,0.31056551,Ebf3,Ebf3_Exon,7,137242359,137242408,137242407,137242408,50,+,CTTCCCAGATTCTATCACTTCTTTATCTCCTGACAAATACCTCACTATCG,"Exon (Gm10578-202/Gm10578-202, exon 4 of 4)",7,137193673,137314445,120773,2,Ebf3-204,72037,Ebf3-204;Ebf3-201;Ebf3-202;Ebf3-203;Ebf3-208;Ebf3-205,Ebf3;Ebf3;Ebf3;Ebf3;Ebf3;Ebf3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,84,13593,ENSMUSG00000010476,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27210,cg13062669,-0.00000928,0.00000213,-4.348387002,0.0000186,loss,ns,0.00000165,0.00000363,0.455334833,0.649187117,pos,ns,-0.000551743,0.001062148,-0.519459289,0.603811178,neg,ns,0.219098851,-0.00001,0.0000365,-0.274918591,0.783561917,neg,ns,0.960786131,Rabgap1l,Rabgap1l_Exon,1,160710136,160710185,160710184,160710185,50,-,ATTATCATTACCATATCCAGTAAATGCATGTCACTGTTCTTCACGTTTCG,"Exon (Rabgap1l-201/Rabgap1l, exon 8 of 21)",1,160257205,160792946,535742,2,Rabgap1l-201,82761,Rabgap1l-201;Rabgap1l-216,Rabgap1l;Rabgap1l,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,5,29809,ENSMUSG00000026721,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7696,cg18010827,-0.00000203,0.00000152,-1.334329023,0.183075353,loss,ns,0.00000118,0.00000259,0.455292704,0.649217387,pos,ns,0.000989406,0.000757698,1.305805932,0.192586737,pos,ns,0.715373626,-0.0000397,0.0000261,-1.523707975,0.128601136,neg,ns,0.946632094,Cutc,Cutc_Exon,19,43762889,43762938,43762937,43762938,50,-,TGATCCAATGGCAGCTCTGGAGACCCTCTTAACCTTGGGATTTGAACGCG,"Exon (Cutc-201/Cutc, exon 6 of 9)",19,43752996,43768631,15636,1,Cutc-201,9893,Cutc-201;Cutc-202;Cutc-204;Cutc-203,Cutc;Cutc;Cutc;Cutc,0;0;0;-1935,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,66388,ENSMUSG00000025193,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2267,cg17127214,0.00000323,0.000000983,3.280431709,0.001154572,gain,ns,0.000000761,0.00000167,0.455255606,0.649244044,pos,ns,0.000308723,0.000489452,0.630751722,0.528667602,pos,ns,0.276817304,-0.0000296,0.0000168,-1.75684167,0.079932033,neg,ns,0.026095188,Meis1,Meis1_Intergenic_downstream,11,18878300,18878349,18878300,18878301,50,+,CGTGAGGGGGAACTAATCTTCCCATTTAAATGTTTGTGGCAATTTTATCT,Downstream (1-2kb),11,18880668,19012002,131335,2,Meis1-203,133653,Meis1-206;Meis1-202;Meis1-209;Meis1-201;Meis1-203;Meis1-208;Meis1-207,Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1,0;0;0;0;0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,17,88,17268,ENSMUSG00000020160,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
13841,cg22489973,0.000000167,0.00000239,0.0700257,0.944218354,gain,ns,-0.00000184,0.00000405,-0.455000939,0.649427044,neg,ns,-0.001670744,0.00118768,-1.406728382,0.160509648,neg,ns,0.794498859,-0.0000189,0.0000408,-0.462018783,0.644391922,neg,ns,0.93193974,Fryl,Fryl_Exon,5,73074701,73074750,73074749,73074750,50,-,GGTGGGAAGGGCAGTGGCTCTCCTTGGTTATGCTCCATCACTTTCAGTCG,"Exon (Fryl-202/Fryl, exon 39 of 63)",5,73020322,73256619,236298,2,Fryl-202,181869,Fryl-219;Fryl-202;Fryl-210;Fryl-201;Fryl-217;Fryl-211;Fryl-214;Fryl-218,Fryl;Fryl;Fryl;Fryl;Fryl;Fryl;Fryl;Fryl,0;0;0;0;0;0;-3402;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,7,72313,ENSMUSG00000070733,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2098,cg01579023,0.0000624,0.00000546,11.41323299,2.01E-25,gain,yes,-0.00000422,0.00000928,-0.454933492,0.649475514,neg,ns,0.00674609,0.002719447,2.48068497,0.013643389,pos,ns,1.865077734,-0.0000474,0.0000935,-0.507059247,0.612473745,neg,ns,0.081230183,Skida1,Skida1_fiveUTR,2,18048334,18048383,18048382,18048383,50,+,TCCCATCTCGGGCACTAAATGATCCCCACCATTTGCAGTAAATATATACG,Promoter (<=1kb),2,18044083,18049051,4969,2,Skida1-202,668,Skida1-205;Skida1-202;Skida1-201;Skida1-203;Skida1-204,Skida1;Skida1;Skida1;Skida1;Skida1,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,8,31,72668,ENSMUSG00000054074,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15740,cg11475981,0.0000312,0.0000101,3.090703063,0.002178035,gain,ns,0.00000781,0.0000172,0.454829881,0.649549976,pos,ns,0.005383267,0.005031271,1.069961782,0.285468885,pos,ns,0.544441222,-0.00024695,0.000173025,-1.427250156,0.154514285,neg,ns,0.800236604,Gm48156,Gm48156_Intergenic_downstream,13,83055213,83055262,83055213,83055214,50,+,CGGTAAATGCAGTGTCCACAAATTCATTAGGAATGCATTTGTTCCTGGAA,Distal Intergenic,13,83189565,83189709,145,2,Gm48156-201,134447,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,16,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16739,cg16754079,-0.00000115,0.00000053,-2.1714548,0.030654938,loss,ns,-0.00000041,0.000000901,-0.454725289,0.649625147,neg,ns,-0.000101294,0.000263911,-0.383816927,0.701377252,neg,ns,0.154048324,0.00000795,0.00000908,0.875528005,0.381964544,pos,ns,0.010570407,Med13,Med13_Promoter,11,86358227,86358276,86358275,86358276,50,+,GCGGGCGGTGTTTTTCCCCCTTTAATCCGAATTCACGGGTTTTCCCTTCG,Promoter (<=1kb),11,86267033,86357602,90570,2,Med13-201,-625,Med13-201,Med13,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,12,327987,ENSMUSG00000034297,conserved gene and region,11,86357880,86358483,604,*,604,54,0.655629139,0.833316301,0.089403974,1.92E-38,CpGisland,TRUE,U1,Pr-A
18597,cg24806816,0.0000924,0.0000126,7.360862206,1.65E-12,gain,yes,0.0000097,0.0000213,0.45472291,0.649626856,pos,ns,0.003089949,0.006248005,0.49454973,0.621268282,pos,ns,0.206720818,0.0000773,0.000214868,0.359845526,0.719207677,pos,ns,0.16767774,Hoxb5,Hoxb5_Exon,11,96303744,96303793,96303792,96303793,50,+,CTTACGGCTACAATTACAATGGGATGGACCTCAGCGTCAACCGCTCCTCG,Promoter (<=1kb),11,96303336,96306121,2786,1,Hoxb5-202,408,Hoxb5-202;Hoxb5-201;Hoxb6-202;Hoxb6-201,Hoxb5;Hoxb5;Hoxb6;Hoxb6,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,22,34,15413,ENSMUSG00000038700,conserved gene and region,11,96303706,96304121,416,*,416,40,0.675480769,0.879120879,0.096153846,5.87E-30,CpGisland,TRUE,U3,Pr-B
18160,cg17141934,-0.00000137,0.00000433,-0.316227679,0.752042517,loss,ns,-0.00000334,0.00000735,-0.454709269,0.649636661,neg,ns,-0.001043769,0.002153556,-0.484672239,0.628251138,neg,ns,0.201866716,0.0000315,0.0000741,0.424931307,0.671181543,pos,ns,0.524643044,Klhl15,Klhl15_Exon,X,94252967,94253016,94253015,94253016,50,+,TTACTTGGATAATGATCATCTGAGCAGGTTCCCAGAGATAGAGCTGTACG,"Exon (Klhl15-202/Klhl15, exon 3 of 4)",20,94234927,94254063,19137,1,Klhl15-202,18040,Klhl15-208;Klhl15-202;Klhl15-205;Klhl15-201;Klhl15-203;Klhl15-206;Klhl15-209;Klhl15-204,Klhl15;Klhl15;Klhl15;Klhl15;Klhl15;Klhl15;Klhl15;Klhl15,18363;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,236904,ENSMUSG00000043929,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27157,cg22410756,0.00000428,0.0000038,1.128750011,0.259876047,gain,ns,-0.00000293,0.00000645,-0.454570955,0.649736073,neg,ns,-0.000320154,0.0018891,-0.169474583,0.865533899,neg,ns,0.062715918,0.0000607,0.000065,0.934865111,0.350585458,pos,ns,0.954266478,Sh3kbp1,Sh3kbp1_Exon,X,159824469,159824518,159824517,159824518,50,+,TGTCAGGAAAGACTACCTTTGAAGGGACAATTCTGTACCGAGCTGCACCG,"Exon (Sh3kbp1-213/Sh3kbp1, exon 7 of 14)",20,159627272,159978069,350798,1,Sh3kbp1-206,197197,Sh3kbp1-206;Sh3kbp1-213;Sh3kbp1-201;Sh3kbp1-207;Sh3kbp1-211;Sh3kbp1-202,Sh3kbp1;Sh3kbp1;Sh3kbp1;Sh3kbp1;Sh3kbp1;Sh3kbp1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,58194,ENSMUSG00000040990,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11844,cg27446026,0.0000105,0.00000487,2.147833194,0.032501857,gain,ns,0.00000376,0.00000827,0.454541395,0.64975732,pos,ns,0.003548304,0.002422579,1.464680419,0.144021515,pos,ns,0.841572625,-0.000162523,0.0000833,-1.950765229,0.051985747,neg,ns,0.527305121,Tle3,Tle3_Intron,9,61121119,61121168,61121119,61121120,50,-,CGATTTTATGGCAGAGCTCATAACAGAGGTAATTTGCTGAAAATGTTCAG,"Intron (Gm33914-201/Gm33914-201, intron 2 of 6)",9,61372366,61418497,46132,1,Tle3-218,-251247,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,30,21887,ENSMUSG00000032280,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
27841,cg12421693,0.000135561,0.0000176,7.703522625,1.80E-13,gain,yes,-0.0000136,0.0000299,-0.45452864,0.649766489,neg,ns,0.062751552,0.008758322,7.164792039,5.71E-12,pos,yes,11.24322745,-0.000348734,0.000301198,-1.157824178,0.247827058,neg,ns,0.67786765,Esrrg,Esrrg_Intron,1,188199743,188199792,188199743,188199744,50,+,CGGACGGCTATTTGTTCAAATTCTGCAGCATTCAAGGTATTGACAGTTTG,"Intron (Esrrg-203/Esrrg, intron 7 of 7)",1,187609029,188214386,605358,1,Esrrg-203,590714,Esrrg-203;Esrrg-201;Esrrg-202,Esrrg;Esrrg;Esrrg,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,60,26381,ENSMUSG00000026610,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8188,cg03022335,0.00000536,0.00000154,3.480803429,0.000571643,gain,ns,-0.00000119,0.00000262,-0.454493991,0.649791393,neg,ns,0.000198155,0.000766442,0.258538301,0.796163064,pos,ns,0.098997974,0.00000501,0.0000264,0.190032186,0.849408283,pos,ns,0.028104914,Pax2,Pax2_threeUTR,19,44835997,44836046,44835997,44835998,50,-,CGCTGCTGCCGCTGCCTATGACCGCCACTAGTTACCGCGGGGACCACATC,3' UTR,19,44756045,44837851,81807,1,Pax2-203,79952,Pax2-203;Pax2-201,Pax2;Pax2,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,166,18504,ENSMUSG00000004231,conserved gene and region,19,44835973,44836413,441,*,441,44,0.725623583,0.798387097,0.099773243,1.19E-33,CpGisland,TRUE,NA,NRS
1971,cg12743738,0.00000587,0.00000925,0.634236956,0.526393928,gain,ns,0.00000714,0.0000157,0.454081671,0.650087795,pos,ns,0.005367201,0.004604484,1.16564659,0.244653434,pos,ns,0.611448683,0.0000524,0.000158348,0.330706836,0.741089345,pos,ns,0.798148878,Tfec,Tfec_Intergenic_downstream,6,16727474,16727523,16727474,16727475,50,+,CGCTAATTACCCATTGTTGAATTGACTTTCCATTCTGTGAGGAATGAATG,Distal Intergenic,6,16834692,16835263,572,2,Tfec-204,107740,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,19,23,21426,ENSMUSG00000029553,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25352,cg14903956,-0.0000094,0.0000126,-0.748122781,0.454953274,loss,ns,0.00000969,0.0000213,0.454066814,0.650098477,pos,ns,0.002608372,0.006251325,0.417251097,0.676783564,pos,ns,0.169550197,-0.000407793,0.000214983,-1.896867919,0.058774696,neg,ns,0.683058882,Grin2b,Grin2b_Exon,6,135732183,135732232,135732231,135732232,50,-,GGCACACAGGGGTTGGACTGGTTCCCTATACAGATGTCCTTCTGGAAACG,"Exon (Grin2b-201/Grin2b, exon 14 of 14)",6,135713233,136173125,459893,2,Grin2b-201,440893,Grin2b-201;Grin2b-202,Grin2b;Grin2b,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,5,14812,ENSMUSG00000030209,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11014,cg15626013,-0.00000562,0.00000594,-0.946660796,0.344548967,loss,ns,0.00000458,0.0000101,0.453947973,0.650183918,pos,ns,0.009145301,0.002955498,3.094334625,0.002152346,pos,ns,2.667087897,-0.000352893,0.000101639,-3.472014983,0.000589956,neg,ns,0.851913755,Gm13518,Gm13518_Intergenic_downstream,2,56257864,56257913,56257912,56257913,50,+,ATGGCCTGTCTCATGATTAATGATTCATGCTACTGAACACAAAAGTGCCG,Distal Intergenic,2,56039853,56040085,233,1,Gm13518-201,218011,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,37,37,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7054,cg08969425,-0.00000103,0.00000364,-0.283319136,0.777121317,loss,ns,-0.00000281,0.00000619,-0.453768674,0.650312834,neg,ns,0.000124307,0.001812717,0.068574755,0.945372324,pos,ns,0.024397116,-0.00000129,0.0000623,-0.020628354,0.983555393,neg,ns,0.92738488,Tfap2a,Tfap2a_Exon,13,40721336,40721385,40721384,40721385,50,+,TATTTTGTCCAGTTTTTCTCTTAAAGATCTTCCTCCATTTTTAGACTTCG,"Exon (Tfap2a-201/Tfap2a, exon 5 of 7)",13,40715302,40730443,15142,2,Tfap2a-201,9058,Tfap2a-201;Tfap2a-202;Tfap2a-205;Tfap2a-203;Tfap2a-209;Tfap2a-208;Tfap2a-206;Tfap2a-204;Tfap2a-207,Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,13,57,21418,ENSMUSG00000021359,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
22238,cg00656055,0.0000116,0.00000791,1.466991057,0.143392222,gain,ns,-0.0000061,0.0000134,-0.453747076,0.650328364,neg,ns,0.006599441,0.003938187,1.675756144,0.09479422,pos,ns,1.023218144,-0.000269512,0.000135434,-1.989991208,0.047470045,neg,ns,0.815559779,Arpp21,Arpp21_Exon,9,112157691,112157740,112157739,112157740,50,-,TGATTGTCTTCTTTATCAATACTAGAGTTATCTCGCTTCAAGATAAACCG,"Exon (Arpp21-202/Arpp21, exon 9 of 19)",9,112065091,112185949,120859,2,Arpp21-202,28209,Arpp21-202;Arpp21-203;Arpp21-229;Arpp21-221;Arpp21-208;Arpp21-223;Arpp21-201;Arpp21-207;Arpp21-210;Arpp21-211;Arpp21-204;Arpp21-217,Arpp21;Arpp21;Arpp21;Arpp21;Arpp21;Arpp21;Arpp21;Arpp21;Arpp21;Arpp21;Arpp21;Arpp21,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,4,74100,ENSMUSG00000032503,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22293,cg06014896,-0.000018,0.0000053,-3.401529957,0.000757959,loss,ns,-0.00000408,0.000009,-0.453733649,0.650338019,neg,ns,-0.003339028,0.002636279,-1.266568514,0.206260441,neg,ns,0.685584057,-0.0000487,0.0000907,-0.537051143,0.591617533,neg,ns,0.915469353,Pacs2,Pacs2_Exon,12,113070170,113070219,113070170,113070171,50,+,CGCTCAAGTGCACTTTCCGGTCCCTCCAGGTCAGCAGGCTGCCCAGCAGC,"Exon (Pacs2-207/Pacs2, exon 22 of 24)",12,113014508,113072138,57631,1,Pacs2-207,55662,Pacs2-207;Pacs2-201;Pacs2-202;Pacs2-203;Pacs2-205;Pacs2-204;Tex22-201;Tex22-203;Tex22-202;Tex22-204,Pacs2;Pacs2;Pacs2;Pacs2;Pacs2;Pacs2;Tex22;Tex22;Tex22;Tex22,0;0;0;0;2368;-453;-4283;-4283;-4537;-4559,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,217893,ENSMUSG00000021143,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26846,cg27251994,-0.0000136,0.00000349,-3.897195796,0.000119283,loss,ns,-0.00000269,0.00000594,-0.453732481,0.650338858,neg,ns,0.000135802,0.001738878,0.078097635,0.937800772,pos,ns,0.027889414,-0.0000603,0.0000598,-1.007674916,0.314396431,neg,ns,0.941817238,Asxl1,Asxl1_Exon,2,153397902,153397951,153397902,153397903,50,-,CGGCTTGAAGATCGTCAGTCCTTTCGTAACACAATTGAAAGTGTTCACAC,"Exon (Asxl1-205/Asxl1, exon 11 of 12)",2,153345829,153404007,58179,1,Asxl1-205,52073,Asxl1-205;Asxl1-201;Asxl1-203,Asxl1;Asxl1;Asxl1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,8,228790,ENSMUSG00000042548,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12341,cg03252927,-0.000000209,0.00000192,-0.109081805,0.91320818,loss,ns,0.00000148,0.00000326,0.45370827,0.650356267,pos,ns,0.000575222,0.000953677,0.603162138,0.54684186,pos,ns,0.262138248,-0.0000497,0.0000328,-1.51465345,0.1308791,neg,ns,0.95610594,Fign,Fign_threeUTR,2,63979004,63979053,63979052,63979053,50,-,GAAGGGATTCATCTATTTCTTCTGGTTTACTGGTGGCACAAATTACTACG,3' UTR,2,63971507,64098012,126506,2,Fign-203,118959,Fign-203;Fign-201;Fign-202;Fign-204,Fign;Fign;Fign;Fign,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,14,84,60344,ENSMUSG00000075324,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18773,cg02019874,-0.00000599,0.00000229,-2.620272894,0.0092186,loss,ns,0.00000176,0.00000388,0.453691833,0.650368086,pos,ns,0.002133603,0.001137832,1.875147122,0.06171241,pos,ns,1.209627495,-0.0000651,0.0000391,-1.662829448,0.09735725,neg,ns,0.949477154,Bcl9,Bcl9_Intron,3,97265890,97265939,97265890,97265891,50,-,CGGATATTACTCCCATGTTGGGATAATTACTGCTAATTAAGCTTGGAACT,"Intron (Bcl9-208/Bcl9, intron 1 of 3)",3,97216553,97297917,81365,2,Bcl9-208,31978,Bcl9-208,Bcl9,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,10,77578,ENSMUSG00000038256,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5164,cg17122748,0.0000286,0.00000731,3.916424483,0.000110576,gain,ns,-0.00000563,0.0000124,-0.453633492,0.650410037,neg,ns,0.001573858,0.003637175,0.432714219,0.665523279,pos,ns,0.176836749,-0.000150085,0.000125082,-1.199889477,0.231098468,neg,ns,0.050381266,Plxna4,Plxna4_Promoter,6,32588213,32588262,32588213,32588214,50,+,CGGCCAAGCGCTGCAAAAACTCCAGCTGCCTGGCGCTCTCTGGGTCCTCC,Promoter (<=1kb),6,32144268,32588192,443925,2,Plxna4-201,-21,Plxna4-201,Plxna4,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,9,243743,ENSMUSG00000029765,conserved gene but different region,6,32587622,32588561,940,*,940,111,0.760638298,0.822377755,0.118085106,6.12E-93,CpGisland,TRUE,U3,Pr-B
13940,cg06662482,-0.0000547,0.00000682,-8.008381974,2.37E-14,loss,yes,0.00000526,0.0000116,0.453569095,0.650456344,pos,ns,0.014919953,0.003396556,4.392671327,0.0000154,pos,ns,4.812817033,-0.000412377,0.000116807,-3.530407244,0.000477867,neg,ns,0.881427591,Mex3c,Mex3c_Exon,18,73589627,73589676,73589627,73589628,50,-,CGTGGTGAAGAGCCCATTTTTGTTGTCACTGGAAGGAAAGAAGATGTTGC,"Exon (Mex3c-201/Mex3c, exon 2 of 2)",18,73573044,73592575,19532,1,Mex3c-201,16583,Mex3c-201,Mex3c,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,5,240396,ENSMUSG00000037253,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13437,cg16852837,-0.0000027,0.00000118,-2.278849358,0.02335578,loss,ns,-0.000000912,0.00000201,-0.453531023,0.650483722,neg,ns,-0.000510827,0.000589239,-0.866926232,0.386652949,neg,ns,0.412678673,-0.000028,0.0000203,-1.380751081,0.168350157,neg,ns,0.01990881,Mbd2,Mbd2_fiveUTR,18,70568342,70568391,70568390,70568391,50,-,CGGGCGGGGCGGGTCTCCGGGATTCCAAGGGCTCGGTTACGGAAGAAGCG,Promoter (<=1kb),18,70568189,70626131,57943,1,Mbd2-201,153,Mbd2-201;Mbd2-202,Mbd2;Mbd2,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,1,17191,ENSMUSG00000024513,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
11739,cg12422325,-0.00000817,0.00000313,-2.612366221,0.009429764,loss,ns,0.00000241,0.00000531,0.453396758,0.650580276,pos,ns,0.003496734,0.001556958,2.245874926,0.025416148,pos,ns,1.594890264,-0.000176001,0.0000535,-3.287060444,0.001128636,neg,ns,0.943550254,Gm10283,Gm10283_Intergenic_downstream,8,60347284,60347333,60347284,60347285,50,+,CGATTTTGACCTCCAAAATAATTTAGTGCCTTGAGCTGAGATTAAATGCA,Distal Intergenic,8,60430024,60503198,73175,2,Gm10283-201,155865,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,330776,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
447,cg16676647,0.000000731,0.0000024,0.304260402,0.761133649,gain,ns,-0.00000185,0.00000408,-0.453362264,0.650605083,neg,ns,7.22E-08,0.001195002,0.0000604,0.999951851,pos,ns,0.0000209,-0.0000575,0.0000411,-1.398564808,0.16294313,neg,ns,0.902681537,Camk2b,Camk2b_Exon,11,5989372,5989421,5989372,5989373,50,-,CGCTTGGCAGGGTTGATGGTCAGCATCTGGTTGATGAGGTTTTTGGCTTC,"Exon (Camk2b-209/Camk2b, exon 10 of 21)",11,5969644,6065748,96105,2,Camk2b-209,76327,Camk2b-209;Camk2b-210;Camk2b-204;Camk2b-208;Camk2b-205;Camk2b-203;Camk2b-201;Camk2b-202;Camk2b-206;Camk2b-207;Camk2b-214;Camk2b-213;Camk2b-211,Camk2b;Camk2b;Camk2b;Camk2b;Camk2b;Camk2b;Camk2b;Camk2b;Camk2b;Camk2b;Camk2b;Camk2b;Camk2b,0;0;0;0;0;0;0;0;0;0;0;11027;76941,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,12323,ENSMUSG00000057897,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1566,cg13906190,0.000151772,0.0000148,10.2335743,2.29E-21,gain,yes,-0.0000114,0.0000252,-0.453319596,0.650635769,neg,ns,0.01855612,0.007381417,2.513896669,0.01244701,pos,ns,1.904934968,-0.000386603,0.000253846,-1.522978802,0.128783429,neg,ns,0.122415362,Runx1t1,Runx1t1_Promoter,4,13743320,13743369,13743320,13743321,50,+,CGCAGACGCCGCCTGTGACAGTGGCAATTCCCTGCGCCCCACATCACATT,Promoter (<=1kb),4,13743436,13893649,150214,1,Runx1t1-201,-67,Runx1t1-201,Runx1t1,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,24,12395,ENSMUSG00000006586,conserved gene but different region,4,13742963,13743355,393,*,393,51,0.737913486,0.971781818,0.129770992,2.14E-45,CpGisland,TRUE,U3,Pr-B
6029,cg09570546,0.00000133,0.0000013,1.020018847,0.308514888,gain,ns,0.000001,0.00000221,0.453207199,0.650716605,pos,ns,0.000246797,0.000646601,0.381683052,0.702957961,pos,ns,0.153070646,-0.0000183,0.0000222,-0.821785805,0.411830396,neg,ns,0.964072005,Zfp507,Zfp507_Intergenic_upstream,7,35866145,35866194,35866145,35866146,50,-,CGATTTGTGCATTATTGCTATTCAGGCTGATAAATGACAGTAATTGTTCT,Distal Intergenic,7,35802017,35803003,987,2,Zfp507-205,-63191,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,4,668501,ENSMUSG00000044452,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U14,Hc-H
22457,cg07291234,0.0000137,0.00000842,1.62824732,0.104488283,gain,ns,0.00000648,0.0000143,0.453081845,0.650806764,pos,ns,-0.000704074,0.00419042,-0.168019999,0.866677108,neg,ns,0.062142675,-0.000157001,0.000144108,-1.089465872,0.276794672,neg,ns,0.803877673,Trabd2b,Trabd2b_threeUTR,4,114611976,114612025,114611976,114611977,50,-,CGGGAAGGGGCTTAGCTGACTTATAAAGCAGGCTCAGAAGTTGGACATCA,3' UTR,4,114406724,114615098,208375,1,Trabd2b-201,205252,Trabd2b-201,Trabd2b,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,5,666048,ENSMUSG00000070867,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20747,cg21535076,-0.0000467,0.000011,-4.229463239,0.0000309,loss,ns,0.00000849,0.0000187,0.453073545,0.650812734,pos,ns,-0.004985559,0.005492944,-0.907629607,0.364778951,neg,ns,0.43797023,-0.000341564,0.000188902,-1.80815428,0.071551481,neg,ns,0.586941359,Gm5671,Gm5671_Intron,14,104864077,104864126,104864077,104864078,50,-,CGACATACACCAAGAAAATTGCTGCATTATAGCTGTGTTAATGGTAATCA,"Intron (D130009I18Rik-201/D130009I18Rik-201, intron 2 of 4)",14,105043450,105044354,905,1,Gm5671-201,-179373,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,12,435420,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19262,cg07890074,-0.00000511,0.00000167,-3.051747279,0.00247193,loss,ns,0.00000129,0.00000285,0.452986509,0.650875336,pos,ns,-0.001418925,0.000833627,-1.702110367,0.089737195,neg,ns,1.047027512,0.0000181,0.0000287,0.632310475,0.527650092,pos,ns,0.039445999,Kmt2d,Kmt2d_fiveUTR,15,98871026,98871075,98871026,98871027,50,-,CGATCCAGAAATCCTCATCCGAGAACATGGCCAGAGCCCGGGCCGCTCCC,Promoter (<=1kb),15,98831669,98871183,39515,2,Kmt2d-202,108,Kmt2d-202;Kmt2d-201,Kmt2d;Kmt2d,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,16,381022,ENSMUSG00000048154,conserved gene and region,15,98870996,98871176,181,*,181,14,0.657458564,0.734492754,0.077348066,1.85E-09,CpGisland,TRUE,U1,Pr-A
21295,cg22900813,-0.0000178,0.00000449,-3.962193112,0.0000922,loss,ns,-0.00000345,0.00000763,-0.452976856,0.650882279,neg,ns,-0.001922141,0.002234202,-0.860325461,0.390274527,neg,ns,0.408629794,0.0000601,0.0000768,0.781853545,0.434897393,pos,ns,0.891267558,Tmem59,Tmem59_Exon,4,107185792,107185841,107185792,107185793,50,+,CGCATGTCAGAGAGGTTGCAGGCTGTTTTCAATTTGTCAGTTTGTGGATG,"Exon (Tmem59-201/Tmem59, exon 2 of 8)",4,107178399,107200996,22598,1,Tmem59-201,7393,Tmem59-201;Tmem59-204;Tmem59-202;Tmem59-205;Tmem59-206;Tmem59-203,Tmem59;Tmem59;Tmem59;Tmem59;Tmem59;Tmem59,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,3,56374,ENSMUSG00000028618,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23637,cg26629129,-0.0000217,0.00000323,-6.72985608,8.22E-11,loss,yes,-0.00000248,0.00000548,-0.45294386,0.650906014,neg,ns,-0.004868044,0.001605444,-3.032209362,0.002632676,neg,ns,2.579602522,0.000120592,0.0000552,2.184196972,0.029696789,pos,ns,0.939628998,Tbx3,Tbx3_Intergenic_upstream,5,119411168,119411217,119411216,119411217,50,-,CGTATTAATTGGGACATCAAGTCGGATTTCATTCCAGGCACTTCCTTCCG,Distal Intergenic,5,119670669,119684561,13893,1,Tbx3-202,-259501,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,7,21386,ENSMUSG00000018604,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2316,cg17454831,0.00000232,0.0000131,0.176919514,0.859687142,gain,ns,-0.0000101,0.0000223,-0.452653558,0.651114842,neg,ns,-0.010080861,0.006534727,-1.542659853,0.123933486,neg,ns,0.906811333,0.000648592,0.000224729,2.886112366,0.004174095,pos,ns,0.827751178,Meis1,Meis1_Exon,11,19014244,19014293,19014292,19014293,50,+,GCTGACCTGTTTGGCGAACACGGCTATATCTTCATTGAATGACTCTGACG,"Exon (Meis1-206/Meis1, exon 3 of 10)",11,18879817,19018985,139169,2,Meis1-206,4692,Meis1-206;Meis1-202;Meis1-209;Meis1-201;Meis1-203;Meis1-208;Meis1-207;Meis1-204;Meis1-205,Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,21,88,17268,ENSMUSG00000020160,mapped to different genes,11,19014258,19014327,70,*,70,9,0.628571429,1.448275862,0.128571429,3.78E-08,CpGisland,TRUE,NA,NRS
2159,cg19804266,0.0000341,0.0000091,3.744336204,0.000215571,gain,ns,0.000007,0.0000155,0.452606649,0.651148588,pos,ns,0.004931071,0.004528778,1.088830456,0.27707439,pos,ns,0.557403615,0.0000836,0.000155744,0.536787983,0.5917991,pos,ns,0.543858756,Pou6f2,Pou6f2_threeUTR,13,18129092,18129141,18129140,18129141,50,+,GTCAGGCCAAGGGACAGGCGCCGGATTTTAAAAGCTTTGGCAAATTCTCG,3' UTR,13,18121098,18382041,260944,2,Pou6f2-201,252900,Pou6f2-201;Pou6f2-202;Pou6f2-204,Pou6f2;Pou6f2;Pou6f2,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,7,18,218030,ENSMUSG00000009734,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24295,cg03986600,-0.0000304,0.00000635,-4.788466077,0.00000261,loss,ns,0.00000488,0.0000108,0.452543101,0.651194307,pos,ns,-0.002328798,0.003158656,-0.737274779,0.461512918,neg,ns,0.335816138,-0.0000319,0.000108626,-0.293432292,0.769388088,neg,ns,0.722926226,Pou3f1,Pou3f1_Intergenic_upstream,4,124520814,124520863,124520814,124520815,50,-,CGGAGCAGCCATTTGCTCGGGCCATAATTTACTTTGGTGAGTTTTTAAGG,Distal Intergenic,4,124656807,124660655,3849,1,Pou3f1-201,-135993,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,24,85,18991,ENSMUSG00000090125,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1026,cg02282892,-0.00000309,0.00000867,-0.356714348,0.721548342,loss,ns,-0.00000666,0.0000147,-0.452527293,0.65120568,neg,ns,0.003439091,0.004313334,0.79731636,0.425877586,pos,ns,0.370715216,-0.000238285,0.000148335,-1.606392501,0.109205785,neg,ns,0.630610957,C1qtnf3,C1qtnf3_Exon,15,10952659,10952708,10952707,10952708,50,+,ATAATAACACTTCTACAGACCTAAAATCCCTGAGACCAGATGAGCTACCG,Promoter (<=1kb),15,10952332,10980150,27819,1,C1qtnf3-201,327,C1qtnf3-201;C1qtnf3-202,C1qtnf3;C1qtnf3,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,81799,ENSMUSG00000058914,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17831,cg19775589,-0.0000114,0.00000464,-2.454142113,0.01467181,loss,ns,0.00000356,0.00000788,0.452114334,0.651502806,pos,ns,0.003065847,0.002308039,1.328333755,0.185044943,pos,ns,0.73272278,-0.0002145,0.0000794,-2.702420294,0.007262915,neg,ns,0.882688733,Fgd5,Fgd5_Exon,6,91989134,91989183,91989182,91989183,50,+,GGTGTCCCCTTCAGCAGGACGGTGTCCAGAGTGGAGTCCTTTGAAGACCG,"Exon (Fgd5-201/Fgd5, exon 2 of 21)",6,91978878,92076004,97127,1,Fgd5-201,10256,Fgd5-201;Fgd5-202,Fgd5;Fgd5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,232237,ENSMUSG00000034037,conserved gene and region,6,91989029,91989256,228,*,228,15,0.631578947,0.703703704,0.065789474,4.09E-09,CpGisland,TRUE,U11,Tr-P
27236,cg19806313,-0.00000128,0.00000374,-0.342792436,0.731986939,loss,ns,-0.00000288,0.00000636,-0.452094967,0.651516742,neg,ns,0.001974503,0.001863883,1.059349294,0.290265437,pos,ns,0.537204674,-0.000140794,0.0000641,-2.196510631,0.02879556,neg,ns,0.924395049,Ptprt,Ptprt_Intron,2,161580069,161580118,161580069,161580070,50,+,CGAGGTAATTTACAAGCAGCCTAGAATGTTCATTATGCTCTATCTACATT,"Intron (Ptprt-203/Ptprt, intron 18 of 30)",2,161521990,162661147,1139158,2,Ptprt-203,1081029,Ptprt-203;Ptprt-204;Ptprt-202;Ptprt-201,Ptprt;Ptprt;Ptprt;Ptprt,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,4,19281,ENSMUSG00000053141,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13327,cg25406034,0.00000523,0.0000028,1.869920372,0.062437268,gain,ns,0.00000215,0.00000475,0.452086673,0.65152271,pos,ns,0.000118992,0.001392902,0.085427302,0.931976834,pos,ns,0.030594883,0.0000562,0.0000479,1.173225209,0.241606162,pos,ns,0.928043072,Gm44690,Gm44690_Intergenic_upstream,7,70104653,70104702,70104701,70104702,50,-,TTCTCTCCCCAAGTGCACACAACGCCAGCCTGTAATTTATAAAAGATACG,Distal Intergenic,7,69883979,69884360,382,2,Gm44690-201,-220342,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,15,24,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13925,cg14613522,-0.00000229,0.000003,-0.761113422,0.447167893,loss,ns,-0.00000231,0.0000051,-0.452074489,0.651531477,neg,ns,0.000959842,0.001495103,0.641990767,0.521353618,pos,ns,0.282867609,-0.000174318,0.0000514,-3.390310598,0.000788501,neg,ns,0.910176447,Chd2,Chd2_Exon,7,73490484,73490533,73490484,73490485,50,+,CGGCATAATAAAGTGCAGCAAGGACCAGAGCTCTTTGAGGGAATTCTGAA,"Exon (Chd2-203/Chd2, exon 16 of 39)",7,73426638,73541746,115109,2,Chd2-203,51213,Chd2-203,Chd2,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,11,16,244059,ENSMUSG00000078671,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22154,cg09783883,-0.00000632,0.00000192,-3.288010906,0.001124961,loss,ns,0.00000148,0.00000327,0.451977474,0.651601289,pos,ns,0.000285478,0.000956799,0.298367976,0.765622217,pos,ns,0.115985473,-0.0000565,0.0000329,-1.71650889,0.08706787,neg,ns,0.950013612,Agbl4,Agbl4_Exon,4,111448596,111448645,111448596,111448597,50,+,CGTCCTATTACCCCGCTCCTGCGCCTGTCATGGACAAGTATATCCTAGAC,"Exon (Bend5-201/Bend5, exon 4 of 6)",4,110397698,111567010,1169313,1,Agbl4-205,1050898,Agbl4-205;Agbl4-206;Agbl4-201;Agbl4-202;Agbl4-209;Bend5-201;Bend5-203;Bend5-206;Bend5-202,Agbl4;Agbl4;Agbl4;Agbl4;Agbl4;Bend5;Bend5;Bend5;Bend5,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,16,78933,ENSMUSG00000061298,mapped to different genes,4,111448510,111448618,109,*,109,9,0.52293578,1.208128079,0.082568807,0.0000019,CpGisland,TRUE,NA,NRS
3438,cg10471264,-0.00000937,0.00000868,-1.080228539,0.280880109,loss,ns,-0.00000666,0.0000147,-0.451923608,0.651640053,neg,ns,-0.017738575,0.004318089,-4.107968736,0.0000511,neg,ns,4.291322331,0.000361952,0.000148499,2.437405416,0.015355051,pos,ns,0.120278754,Bcl11a,Bcl11a_Exon,11,24078433,24078482,24078433,24078434,50,+,CGGGAATTCTCGCGTAAGTAACCCAATAATAGTAATAATAATTATTAATA,Promoter (<=1kb),11,24078056,24173194,95139,1,Bcl11a-201,377,A830031A19Rik-201;Bcl11a-201;Bcl11a-203;Bcl11a-205;Bcl11a-202;Bcl11a-204,A830031A19Rik;Bcl11a;Bcl11a;Bcl11a;Bcl11a;Bcl11a,0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,51,98,14025,ENSMUSG00000000861,conserved gene and region,11,24078318,24078446,129,*,129,20,0.705426357,1.347962382,0.15503876,8.63E-20,CpGisland,TRUE,NA,NRS
3210,cg24512174,-0.00000105,0.000000629,-1.67553258,0.09483808,loss,ns,-0.000000482,0.00000107,-0.45172947,0.651779767,neg,ns,-0.00037837,0.000312839,-1.209474906,0.227402005,neg,ns,0.643205711,-0.000000963,0.0000108,-0.089554138,0.928699361,neg,ns,0.013395807,Xpo1,Xpo1_Promoter,11,23255948,23255997,23255948,23255949,50,-,CGCGGCGCCATGGGCTGAAAACTCAACCGAGATGGAATCTCCCAGTCTGA,Promoter (<=1kb),11,23256041,23297597,41557,1,Xpo1-204,-93,Xpo1-201;Xpo1-204;Xpo1-203;Xpo1-206;Xpo1-202;Xpo1-205,Xpo1;Xpo1;Xpo1;Xpo1;Xpo1;Xpo1,0;0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,7,14,103573,ENSMUSG00000020290,conserved gene but different region,11,23255743,23256076,334,*,334,31,0.676646707,0.821746032,0.092814371,7.76E-23,CpGisland,TRUE,U2,Pr-W
3755,cg14048947,-0.00000931,0.00000349,-2.670704548,0.007968675,loss,ns,0.00000268,0.00000592,0.451682568,0.651813523,pos,ns,0.001546591,0.001735314,0.89124549,0.373488693,pos,ns,0.427722541,-0.0000474,0.0000597,-0.794959021,0.427245545,neg,ns,0.947005072,5730522E02Rik,5730522E02Rik_Intron,11,25287568,25287617,25287616,25287617,50,-,TTGCTATCTGCTGACTGTGGGATGTCATGTACGTACCCTATAGCTATGCG,"Intron (4933427E13Rik-204/4933427E13Rik-204, intron 1 of 1)",11,25602816,25620098,17283,2,5730522E02Rik-205,332530,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,90,70626,NA,mapped to different genes,11,25287599,25287683,85,*,85,8,0.505882353,1.574074074,0.094117647,0.00000348,CpGisland,TRUE,U15,NS
4673,cg03617050,-0.00000193,0.00000219,-0.882199753,0.378352336,loss,ns,0.00000168,0.00000371,0.451640526,0.651843781,pos,ns,-0.000417274,0.001088089,-0.38349217,0.701617738,neg,ns,0.15389944,0.0000014,0.0000374,0.037396304,0.970193089,pos,ns,0.953700861,Cacna1d,Cacna1d_threeUTR,14,30089325,30089374,30089325,30089326,50,-,CGCTACCAACAACAATTAAGGCATCAAAAGTGTTCCATGCATCAGTGAAA,3' UTR,14,30039941,30491453,451513,2,Cacna1d-202,402079,Cacna1d-202;Cacna1d-201;Cacna1d-208;Cacna1d-209;Cacna1d-214;Cacna1d-204;Cacna1d-207;Cacna1d-218;Cacna1d-216;Cacna1d-217;Cacna1d-210;Cacna1d-219,Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,13,26,12289,ENSMUSG00000015968,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2323,cg00785760,0.000250269,0.0000296,8.445342525,1.19E-15,gain,yes,0.0000227,0.0000503,0.451609829,0.651865875,pos,ns,-0.004293511,0.014749121,-0.291102822,0.771167353,neg,ns,0.112851364,0.000740363,0.000507221,1.459646275,0.145399909,pos,ns,0.513514998,Meis1,Meis1_Exon,11,19016291,19016340,19016291,19016292,50,-,CGGGTCCCCATACATCGTGGAGGGGATGCCTACTCCATCCATGCCCCCGT,"Exon (Meis1-206/Meis1, exon 2 of 10)",11,18879817,19018985,139169,2,Meis1-206,2645,Meis1-206;Meis1-202;Meis1-209;Meis1-201;Meis1-203;Meis1-208;Meis1-207;Meis1-204;Meis1-205,Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,21,88,17268,ENSMUSG00000020160,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6858,cg25651791,0.0000238,0.00000913,2.611228186,0.009460512,gain,ns,0.000007,0.0000155,0.451579625,0.651887614,pos,ns,0.012341621,0.004543318,2.716433268,0.006969444,pos,ns,2.156801865,-0.000106162,0.000156244,-0.679459999,0.497353459,neg,ns,0.079725452,Nr6a1,Nr6a1_Intron,2,38925333,38925382,38925333,38925334,50,+,CGCTAATTGCTCCAGGGCGCTTTCCAAGTTCAAAAGTTCACCTTTTACGA,"Intron (Nr6a1-202/Nr6a1, intron 2 of 11)",2,38723370,38927688,204319,2,Nr6a1-202,2306,Nr6a1-202;Nr6a1-201;Nr6a1-208,Nr6a1;Nr6a1;Nr6a1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,12,14536,ENSMUSG00000063972,conserved gene and region,2,38925258,38925381,124,*,124,11,0.596774194,0.999267399,0.088709677,3.88E-08,CpGisland,TRUE,U3,Pr-B
19891,cg00332221,0.00000953,0.00000389,2.452431989,0.014740365,gain,ns,-0.00000298,0.0000066,-0.451544037,0.651913229,neg,ns,0.001050868,0.001934262,0.543291678,0.587319435,pos,ns,0.231125628,0.0000134,0.0000665,0.201434234,0.840491158,pos,ns,0.819841161,Gm45837,Gm45837_threeUTR,7,101511505,101511554,101511553,101511554,50,+,GCCTCCAACCGTGAGCACTGGACCAAGGTGTCCCACAAGTTCACCATCCG,3' UTR,7,101410886,101512819,101934,1,Gm45837-201,100619,Gm45837-201;Pde2a-201;Pde2a-212;Pde2a-202;Pde2a-209;Pde2a-204,Gm45837;Pde2a;Pde2a;Pde2a;Pde2a;Pde2a,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,6,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18312,cg18228590,0.000126988,0.0000157,8.099904325,1.28E-14,gain,yes,-0.000012,0.0000266,-0.451462375,0.651972007,neg,ns,0.025564108,0.007802932,3.276218366,0.001171344,pos,ns,2.93131549,-0.000375409,0.000268342,-1.398994035,0.162814489,neg,ns,0.276132621,Gm48316,Gm48316_Intergenic_upstream,13,94708149,94708198,94708197,94708198,50,-,GGGTAGCTGGAAAGCGGCTCAGGGAATACGGTTCCTTCTCTTAGCTACCG,Distal Intergenic,13,94752270,94752593,324,1,Gm48316-201,-44121,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,36,42,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
14552,cg09363187,0.000220207,0.0000107,20.5631521,7.22E-60,gain,yes,-0.00000821,0.0000182,-0.45145306,0.651978712,neg,ns,0.028421948,0.005329895,5.332553212,0.000000187,pos,ns,6.728156464,-0.000563881,0.000183295,-3.076363297,0.002282257,neg,ns,0.207459325,Hspa2,Hspa2_Exon,12,76405266,76405315,76405314,76405315,50,-,GCGGAGGAGTTCAAGCGCAAGCACAAGAAGGACATTGGGCCCAACAAGCG,"Exon (Hspa2-201/Hspa2, exon 2 of 2)",12,76404176,76406938,2763,1,Hspa2-201,1090,Hspa2-201;Hspa2-202,Hspa2;Hspa2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,15512,ENSMUSG00000059970,conserved gene and region,12,76404926,76405509,584,*,584,56,0.630136986,0.96623039,0.095890411,1.23E-41,CpGisland,TRUE,U3,Pr-B
4335,cg06795337,0.0000514,0.0000145,3.537914477,0.000465,gain,ns,0.0000111,0.0000247,0.451294569,0.652092796,pos,ns,0.027042015,0.007230182,3.740156958,0.000219029,pos,ns,3.659499078,-0.000161498,0.000248645,-0.649511276,0.516488915,neg,ns,0.275005933,Gm6081,Gm6081_Intron,13,28416345,28416394,28416393,28416394,50,+,AGAGAGAATAACTCTAAGTAGGTCAGGCCTGTATTTCTAAAAATGCTACG,"Intron (Gm40841-202/Gm40841-202, intron 2 of 3)",13,28510744,28511232,489,2,Gm6081-201,94838,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,606729,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16842,cg23929585,-0.00000877,0.00000673,-1.302145481,0.193833313,loss,ns,0.00000516,0.0000114,0.451237652,0.652133768,pos,ns,-0.001361573,0.003350335,-0.406399034,0.684729838,neg,ns,0.164480747,-0.0000776,0.000115218,-0.67325755,0.501285059,neg,ns,0.59235763,Lrba,Lrba_threeUTR,3,86746152,86746201,86746200,86746201,50,-,ATTGGATCTTTTCATCACTCAGACTTGTTGATGAGCAGGAGCAAGGCACG,3' UTR,3,86224680,86746712,522033,1,Lrba-202,521472,Lrba-202;Lrba-204;Lrba-201;Lrba-206,Lrba;Lrba;Lrba;Lrba,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,45,80877,ENSMUSG00000028080,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1573,cg26392163,0.0000422,0.0000129,3.265806147,0.001213768,gain,ns,-0.0000099,0.0000219,-0.451214423,0.652150489,neg,ns,0.0090173,0.006428634,1.402677484,0.161713709,pos,ns,0.791253162,-0.00043066,0.00022108,-1.94798158,0.052319484,neg,ns,0.648812829,Runx1t1,Runx1t1_Intron,4,13781662,13781711,13781662,13781663,50,+,CGGTTAGAATATCTGAAACTATTAATTCTCTTGTATTGAATAGTTGGTGG,"Intron (Runx1t1-201/Runx1t1, intron 1 of 10)",4,13743436,13893649,150214,1,Runx1t1-201,38226,Runx1t1-201;Runx1t1-206;Runx1t1-204;Runx1t1-203;Runx1t1-202,Runx1t1;Runx1t1;Runx1t1;Runx1t1;Runx1t1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,24,12395,ENSMUSG00000006586,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2051,cg13201639,-0.0000037,0.00000165,-2.245856693,0.02541733,loss,ns,0.00000126,0.0000028,0.451202475,0.65215909,pos,ns,-0.00155842,0.000819418,-1.90186196,0.058116013,neg,ns,1.235704185,0.0000372,0.0000282,1.32166535,0.187254131,pos,ns,0.050248159,Cited2,Cited2_fiveUTR,10,17723927,17723976,17723975,17723976,50,-,TTCACTTCCAGGACTGGAAATGGCAGACCATATGATGGCCATGAACCACG,Promoter (<=1kb),10,17723218,17725674,2457,1,Cited2-201,709,Cited2-201;Cited2-203;Cited2-202,Cited2;Cited2;Cited2,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,11,17684,ENSMUSG00000039910,conserved gene but different region,10,17723975,17724278,304,*,304,25,0.700657895,0.681003584,0.082236842,3.54E-17,CpGisland,TRUE,U1,Pr-A
26290,cg01476332,-0.00000227,0.00000224,-1.013987301,0.311379558,loss,ns,-0.00000172,0.00000381,-0.451163163,0.65218739,neg,ns,-0.000493279,0.001115102,-0.442362291,0.658535532,neg,ns,0.181420787,0.00000272,0.0000383,0.070867931,0.943548562,pos,ns,0.947862296,Ralgapa2,Ralgapa2_Intron,2,146290977,146291026,146290977,146290978,50,+,CGAAGGCCTATTACTTTATTCGGTGCCACCGCTGACAGGCAGCCACGTGG,"Intron (Ralgapa2-202/Ralgapa2, intron 38 of 40)",2,146239879,146512004,272126,2,Ralgapa2-202,220978,Ralgapa2-202;Ralgapa2-211;Ralgapa2-210;Ralgapa2-205;Ralgapa2-208,Ralgapa2;Ralgapa2;Ralgapa2;Ralgapa2;Ralgapa2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,26,241694,ENSMUSG00000037110,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27300,cg06126829,0.0000705,0.0000135,5.233680482,0.000000307,gain,yes,-0.0000103,0.0000229,-0.451026383,0.652285858,neg,ns,0.020503431,0.006700353,3.060052624,0.002406373,pos,ns,2.618637144,-0.000618041,0.000230425,-2.682182346,0.007706435,neg,ns,0.415520263,Hnf4a,Hnf4a_fiveUTR,2,163506764,163506813,163506812,163506813,50,-,TTAACGTATCCACCCACCTTGGGTGATTAGAAGAATCAATAAGATAACCG,Promoter (<=1kb),2,163506808,163552635,45828,1,Hnf4a-205,0,Hnf4a-205;R3hdml-201,Hnf4a;R3hdml,0;14446,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,6,15378,ENSMUSG00000017950,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
15053,cg08812811,0.0000061,0.00000698,0.873642168,0.382989411,gain,ns,-0.00000535,0.0000119,-0.451008467,0.652298757,neg,ns,-0.00790572,0.003473178,-2.2762209,0.023514499,neg,ns,1.628664274,0.000181352,0.000119442,1.518325776,0.129951443,pos,ns,0.830862037,Gm6317,Gm6317_Intergenic_upstream,13,78658644,78658693,78658644,78658645,50,-,CGTTTGGGAGCTGCCAGGTTTTAGAGAGCCCAATTATGTCTTTTTGGAAC,Distal Intergenic,13,78372987,78379128,6142,2,Gm6317-201,-279565,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,11,622365,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22951,cg09702366,0.00000848,0.00000595,1.423377246,0.155632459,gain,ns,0.00000456,0.0000101,0.451006138,0.652300433,pos,ns,-0.001331618,0.002963709,-0.449307952,0.653523485,neg,ns,0.184738801,0.000100408,0.000101922,0.985145317,0.325320953,pos,ns,0.865318253,Gm13991,Gm13991_Intergenic_downstream,2,116322583,116322632,116322631,116322632,50,-,TAGCTTCTTCTTGCTGAGTGCAGCCTTTGCCGACTGACAGAAAAATACCG,Distal Intergenic,2,116527843,116528490,648,2,Gm13991-201,205907,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,14,20,433464,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4010,cg16171324,-0.00000142,0.00000284,-0.500328252,0.617198959,loss,ns,-0.00000217,0.00000482,-0.450961976,0.652332228,neg,ns,-0.00100893,0.001412642,-0.714215088,0.475631612,neg,ns,0.322729289,-0.0000247,0.0000486,-0.508688569,0.611332367,neg,ns,0.938218862,Gm50479,Gm50479_Exon,8,26432207,26432256,26432207,26432208,50,-,CGAAGATAATTGTTTCATCCACTTTGTCAAAGCTGAAATGAAAAGAGGGC,"Exon (Gm31898-201/Gm31898-201, exon 4 of 7)",8,26237222,26237407,186,1,Gm50479-201,195034,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,21,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8073,cg17641859,0.00001,0.00000233,4.296242551,0.0000233,gain,ns,0.00000178,0.00000395,0.450949417,0.65234127,pos,ns,0.00533261,0.001158507,4.603002297,0.00000608,pos,ns,5.215929364,-0.0000895,0.0000398,-2.24591988,0.025413235,neg,ns,0.057610059,Pax2,Pax2_Intergenic_upstream,19,44724179,44724228,44724227,44724228,50,+,CCCATCTGCCAAAGCCGAGATTTTAATCTTTAATCCATGAGCAATCAGCG,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-31817,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,19,44723992,44724314,323,*,323,27,0.616099071,0.905795596,0.083591331,1.06E-18,CpGisland,TRUE,U13,Hc-P
16315,cg07843451,0.0000853,0.0000217,3.934498442,0.000102944,gain,ns,-0.0000166,0.0000368,-0.450762504,0.652475844,neg,ns,0.032592488,0.010794069,3.019481233,0.002742503,pos,ns,2.561852909,-0.000847006,0.000371207,-2.281760262,0.023181096,neg,ns,0.337324882,Nfix,Nfix_Intron,8,84741051,84741100,84741099,84741100,50,+,GCGGCAAATTGTTGTTTACTTTTAATTAAGTAAACAATGTCGGCTTTCCG,"Intron (Nfix-204/Nfix, intron 2 of 10)",8,84704712,84773396,68685,2,Nfix-204,32296,Nfix-204;Nfix-201;Nfix-202;Nfix-203;Nfix-205,Nfix;Nfix;Nfix;Nfix;Nfix,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,49,18032,ENSMUSG00000001911,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15998,cg11232667,0.00000139,0.00000106,1.318931032,0.188165623,gain,ns,-0.000000809,0.0000018,-0.450672268,0.652540816,neg,ns,-0.000163339,0.000525982,-0.310540748,0.756358462,neg,ns,0.12127233,-0.0000121,0.0000181,-0.670788378,0.502854805,neg,ns,0.968356003,Abhd17c,Abhd17c_Exon,7,84110734,84110783,84110734,84110735,50,-,CGATGACCTCATCCTCTGTACCATGAATGACCAACACAGGAGAGGTGACT,"Exon (Abhd17c-201/Abhd17c, exon 3 of 3)",7,84109356,84151893,42538,2,Abhd17c-201,41110,Abhd17c-201;Abhd17c-202,Abhd17c;Abhd17c,0;37032,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,70178,ENSMUSG00000038459,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13370,cg02119111,-0.0000258,0.00000936,-2.759131096,0.006140046,loss,ns,-0.00000717,0.0000159,-0.450665249,0.65254587,neg,ns,-0.005624177,0.004660578,-1.206755338,0.228446432,neg,ns,0.641215621,-0.0000543,0.000160277,-0.338719135,0.735050634,neg,ns,0.61012939,Nr2f2,Nr2f2_Intergenic_downstream,7,70348795,70348844,70348843,70348844,50,-,GGAAGCCTGCGCCACCTCATTTCCCATCAGTAATCCCAATAAAATTAACG,Distal Intergenic,7,70353074,70355237,2164,2,Nr2f2-203,6442,Nr2f2-201;Nr2f2-203,Nr2f2;Nr2f2,0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,19,69,11819,ENSMUSG00000030551,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3322,cg24208587,-0.0000343,0.00000557,-6.156059712,2.31E-09,loss,yes,0.00000427,0.00000947,0.450644518,0.652560797,pos,ns,-0.003890109,0.002773924,-1.402384454,0.161801072,neg,ns,0.791018605,0.0000178,0.0000954,0.186109973,0.852480245,pos,ns,0.882717497,Gm11890,Gm11890_Intergenic_downstream,4,23602623,23602672,23602623,23602624,50,-,CGCCTCTGTTCCTACGATGCAGTCTCCAATTAGCTGTCTACGGTGGCACA,Distal Intergenic,4,23659928,23660344,417,2,Gm11890-201,57721,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,32,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6887,cg17803617,-0.00000678,0.00000238,-2.850154289,0.004662586,loss,ns,0.00000182,0.00000404,0.450597309,0.652594791,pos,ns,-0.001266967,0.001184216,-1.069877822,0.28550662,neg,ns,0.544383817,-0.0000215,0.0000407,-0.529019752,0.597170329,neg,ns,0.950701725,Slc35b3,Slc35b3_Intergenic_upstream,13,39287863,39287912,39287863,39287864,50,-,CGCCTTCTTTATTGAAAGGCAAAACAAGGAGTTGAGGACAAAAATCATTA,Distal Intergenic,13,38932136,38960875,28740,2,Slc35b3-201,-327037,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,9,11,108652,ENSMUSG00000021432,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21011,cg21149585,-0.0000625,0.0000132,-4.739485988,0.00000327,loss,ns,-0.0000101,0.0000224,-0.450594382,0.652596898,neg,ns,-0.013247911,0.00656192,-2.018907822,0.044357373,neg,ns,1.353034187,-0.000168794,0.000225664,-0.747988337,0.455034246,neg,ns,0.43300562,Vrk1,Vrk1_Exon,12,106055830,106055879,106055878,106055879,50,+,GGGAGTGACCTTCAGAAAATATATGAAGCAAATGCCAAAAGGTTTTCTCG,"Exon (Vrk1-202/Vrk1, exon 6 of 13)",12,106010228,106075220,64993,1,Vrk1-202,45602,Vrk1-202;Vrk1-205;Vrk1-203;Vrk1-201;Vrk1-204,Vrk1;Vrk1;Vrk1;Vrk1;Vrk1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,37,22367,ENSMUSG00000021115,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11815,cg25028303,-0.00000281,0.0000018,-1.556657361,0.120572144,loss,ns,0.00000138,0.00000306,0.450559119,0.65262229,pos,ns,0.000121312,0.000897006,0.135241202,0.892508943,pos,ns,0.049387424,-0.0000462,0.0000308,-1.496999087,0.135410938,neg,ns,0.951654097,Gm18070,Gm18070_Intergenic_upstream,17,60918461,60918510,60918461,60918462,50,-,CGTCAAGAGCAGAATGTTGAACTGGCGTGAAGAAAATATAAAATTGATTA,Distal Intergenic,17,61016618,61017365,748,1,Gm18070-201,-98157,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,100416362,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14714,cg12616148,0.0000729,0.0000157,4.631712038,0.00000534,gain,ns,-0.000012,0.0000267,-0.45042387,0.652719683,neg,ns,0.022587036,0.007835673,2.882590548,0.004219791,pos,ns,2.374709093,-0.000474394,0.000269468,-1.760483555,0.079311913,neg,ns,0.370718383,Gm21816,Gm21816_Intron,16,77421723,77421772,77421723,77421724,50,+,CGTGCAAACAGTCTAGACCAATGACCTGCAGCATCATGTCCTTTGAAGAA,"Intron (Mir99ahg-207/Mir99ahg-207, intron 4 of 7)",16,77400847,77401208,362,1,Gm21816-201,20876,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,8,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
26555,cg22513691,0.0000109,0.00000389,2.804399868,0.005359189,gain,ns,0.00000297,0.0000066,0.450305937,0.652804612,pos,ns,-0.000534363,0.001933821,-0.276324715,0.782482806,neg,ns,0.106525197,-0.0000129,0.0000665,-0.193421704,0.846755388,neg,ns,0.941055451,Casz1,Casz1_Intron,4,148916081,148916130,148916129,148916130,50,-,AAGGAAATATGGTCAGAAATTGTCAGCTTTCAGATCTAATTTACCTGACG,"Intron (Casz1-201/Casz1, intron 4 of 15)",4,148804429,148945129,140701,1,Casz1-201,111652,Casz1-201;Casz1-202;Casz1-206,Casz1;Casz1;Casz1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,94,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12123,cg18707507,-0.00000926,0.00000314,-2.949800139,0.003421898,loss,ns,-0.0000024,0.00000533,-0.450304981,0.6528053,neg,ns,0.001737322,0.001562896,1.11160412,0.267169757,pos,ns,0.573212705,0.0000157,0.0000537,0.292977482,0.769735379,pos,ns,0.946748551,Hnrnph3,Hnrnph3_Exon,10,63019401,63019450,63019449,63019450,50,+,AACTGAACTATTTCCTCTTTGCTGCAACCAAATGGTAGTCCACGAAGTCG,"Exon (Hnrnph3-201/Hnrnph3, exon 2 of 10)",10,63014664,63023894,9231,2,Hnrnph3-201,4444,Hnrnph3-201;Hnrnph3-202;Hnrnph3-204;Hnrnph3-205;Hnrnph3-206;Hnrnph3-203;Pbld2-202;Rufy2-205,Hnrnph3;Hnrnph3;Hnrnph3;Hnrnph3;Hnrnph3;Hnrnph3;Pbld2;Rufy2,0;0;0;-3233;0;0;-4865;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,7,432467,ENSMUSG00000020069,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24522,cg07440346,-0.0000496,0.0000203,-2.448895327,0.014883044,loss,ns,-0.0000155,0.0000344,-0.4502928,0.652814073,neg,ns,0.044052031,0.010086614,4.367375381,0.0000172,pos,ns,4.765351281,-0.002083916,0.000346878,-6.007637214,5.27E-09,neg,yes,0.38384227,Ypel3,Ypel3_fiveUTR,7,126777809,126777858,126777809,126777810,50,+,CGTGGGGCCACTGCCCCCGGCCCCCGCCATGGTGCGGATTTCAAAGCCCA,Promoter (<=1kb),7,126776955,126780514,3560,1,Ypel3-201,854,Gdpd3-201;Gdpd3-203;Tbx6-202;Tbx6-201;Ypel3-201;Ypel3-210;Ypel3-204;Ypel3-209;Ypel3-211;Ypel3-203;Ypel3-207;Ypel3-205;Ypel3-202;Ypel3-208;Ypel3-206,Gdpd3;Gdpd3;Tbx6;Tbx6;Ypel3;Ypel3;Ypel3;Ypel3;Ypel3;Ypel3;Ypel3;Ypel3;Ypel3;Ypel3;Ypel3,11475;9289;-3625;-3625;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,4,66090,ENSMUSG00000042675,conserved gene and region,7,126777793,126777939,147,*,147,11,0.653061225,0.70952172,0.074829932,0.000000227,CpGisland,TRUE,U4,Pr-F
4749,cg20918991,-0.000014,0.00000278,-5.057893661,0.000000727,loss,yes,0.00000212,0.00000472,0.450226062,0.652862136,pos,ns,-0.001194856,0.001382523,-0.864257841,0.3881145,neg,ns,0.411040132,-0.00000607,0.0000475,-0.127736917,0.898439995,neg,ns,0.934056258,Mecom,Mecom_Intron,3,30420612,30420661,30420612,30420613,50,+,CGACCTTTGACACAGGCTGATGAGTTCCATGCCTGTCCTGGTGTGCTTTT,"Intron (Mecom-212/Mecom, intron 1 of 15)",3,29951299,30509733,558435,2,Mecom-212,89072,Mecom-212;Mecom-213;Mecom-207;Mecom-208;Mecom-211;Mecom-209,Mecom;Mecom;Mecom;Mecom;Mecom;Mecom,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,80,14013,ENSMUSG00000027684,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27130,cg05064659,0.0000172,0.00000982,1.754606383,0.080314602,gain,ns,0.00000751,0.0000167,0.450133663,0.652928682,pos,ns,0.018922222,0.004888711,3.870595169,0.000132403,pos,ns,3.878102494,-0.000427025,0.000168122,-2.539962869,0.01157439,neg,ns,0.324324571,Dhx35,Dhx35_Intergenic_downstream,2,159002921,159002970,159002921,159002922,50,-,CGGGGAGGCCGCTGGGTAATGGCCCCTGTAAAGTGTTAATTGCCTATTGA,Distal Intergenic,2,158850629,158857368,6740,1,Dhx35-204,152341,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,14,14,71715,ENSMUSG00000027655,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15484,cg12324954,-0.00000375,0.00000215,-1.748683143,0.081335596,loss,ns,0.00000164,0.00000365,0.450108107,0.652947088,pos,ns,0.000623004,0.001068154,0.583253323,0.560146847,pos,ns,0.251698104,-0.0000458,0.0000367,-1.245639629,0.213837362,neg,ns,0.951657118,Gm7503,Gm7503_Intergenic_upstream,18,81132033,81132082,81132033,81132034,50,+,CGGAATTAAATTGGAAAGGACAGCCGATTGTACTTTTTATGTACAGACAA,Distal Intergenic,18,80997003,80997383,381,2,Gm7503-201,-134650,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,17,21,665124,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13452,cg02576158,0.000000513,0.00000164,0.313503512,0.754108988,gain,ns,-0.00000125,0.00000278,-0.450032467,0.653001567,neg,ns,0.002277178,0.000814124,2.797089962,0.005478845,pos,ns,2.261310997,-0.0000756,0.000028,-2.701444178,0.007283767,neg,ns,0.961228116,Mink1,Mink1_Exon,11,70607772,70607821,70607772,70607773,50,-,CGGGTCCCACTGAAGCCATATGCAGCACCTGTACCCCGATCCCAGTCCCT,Promoter (<=1kb),11,70607812,70608828,1017,1,Mink1-211,0,Mink1-201;Mink1-202;Mink1-205;Mink1-203;Mink1-204;Mink1-207;Mink1-208;Mink1-213;Mink1-210;Mink1-212;Mink1-211;Mink1-209;Mink1-206,Mink1;Mink1;Mink1;Mink1;Mink1;Mink1;Mink1;Mink1;Mink1;Mink1;Mink1;Mink1;Mink1,0;0;0;0;0;8784;0;0;0;0;0;-1917;-2230,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,7,50932,ENSMUSG00000020827,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17004,cg27025573,0.0000176,0.00000736,2.391748099,0.017364059,gain,ns,-0.00000562,0.0000125,-0.44990229,0.653095329,neg,ns,0.005508154,0.003662075,1.504107405,0.133571811,pos,ns,0.874285186,-0.000260976,0.000125938,-2.072251906,0.039068372,neg,ns,0.573243063,Zfp423,Zfp423_Intron,8,87834134,87834183,87834182,87834183,50,+,GGGTAATTGGGTGTCTGAGAGAAATTGCCAGCGGCTGGCCGGCTCCCCCG,"Intron (Zfp423-202/Zfp423, intron 3 of 7)",8,87661810,87959595,297786,2,Zfp423-202,125412,Zfp423-202;Zfp423-201;Zfp423-207;Zfp423-205;Zfp423-204,Zfp423;Zfp423;Zfp423;Zfp423;Zfp423,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,42,53,94187,ENSMUSG00000045333,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7738,cg04839060,-0.00000442,0.00000248,-1.781210737,0.075857055,loss,ns,-0.0000019,0.00000421,-0.449901123,0.65309617,neg,ns,0.000885582,0.001234615,0.717293943,0.473732867,pos,ns,0.324466484,-0.0000875,0.0000425,-2.060622545,0.040173105,neg,ns,0.94654926,Arhgap15,Arhgap15_Intron,2,44025761,44025810,44025809,44025810,50,+,CCTACTGAAGAAACAGATTAATTGGAGGCTGATTCACTGGTGAACAGGCG,"Intron (Arhgap15-203/Arhgap15, intron 6 of 14)",2,43748824,44395953,647130,1,Arhgap15-203,276937,Arhgap15-203;Arhgap15-202;Arhgap15-201,Arhgap15;Arhgap15;Arhgap15,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,72,78,76117,ENSMUSG00000049744,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5723,cg19453800,0.000000716,0.00000964,0.074271879,0.940841955,gain,ns,-0.00000737,0.0000164,-0.449889055,0.653104863,neg,ns,-0.003669326,0.004799028,-0.764597785,0.445092713,neg,ns,0.351549516,0.000101384,0.000165038,0.614308409,0.539462123,pos,ns,0.669636028,Kirrel3,Kirrel3_Intron,9,34618186,34618235,34618186,34618187,50,-,CGTTTAGACAGACTTCTAATCTTGGCTCAGAACAGTCAAGAGGCATTTTA,"Intron (Kirrel3-202/Kirrel3, intron 2 of 16)",9,34486126,35035280,549155,1,Kirrel3-202,132060,Kirrel3-202;Kirrel3-206;Kirrel3-209;Kirrel3-201;Kirrel3-208;Kirrel3-205,Kirrel3;Kirrel3;Kirrel3;Kirrel3;Kirrel3;Kirrel3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,21,67703,ENSMUSG00000032036,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24763,cg22909686,-0.0000253,0.00000736,-3.430703886,0.000683628,loss,ns,0.00000563,0.0000125,0.449867968,0.653120052,pos,ns,-0.007009579,0.003664208,-1.912986251,0.056670924,neg,ns,1.24663971,-0.0000442,0.000126012,-0.350411714,0.726267716,neg,ns,0.819674524,Nrp1,Nrp1_Intron,8,128384902,128384951,128384902,128384903,50,-,CGGAATGGAGACCAGAAATAGAAAGAATTTTAATGAGAACATGTCTTGGG,"Intron (Nrp1-202/Nrp1, intron 2 of 3)",8,128359073,128428469,69397,1,Nrp1-202,25829,Nrp1-202;Nrp1-201;Nrp1-204,Nrp1;Nrp1;Nrp1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,2,18186,ENSMUSG00000025810,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16604,cg16628256,0.00000432,0.000000852,5.070823154,0.000000683,gain,yes,-0.000000651,0.00000145,-0.449793422,0.653173748,neg,ns,0.000640726,0.000423939,1.511364611,0.131714258,pos,ns,0.880367211,-0.00000295,0.0000146,-0.2022702,0.839838174,neg,ns,0.016930886,Six3,Six3_Exon,17,85621951,85622000,85621951,85621952,50,+,CGCGAACTGGCGCAGGCCACCGGCCTCACTCCCACACAAGTAGGCAACTG,"Exon (Six3-202/Six3, exon 2 of 3)",17,85613608,85625222,11615,1,Six3-202,8343,Six3-202;Six3-203;Six3-201,Six3;Six3;Six3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,24,20473,ENSMUSG00000038805,conserved gene and region,17,85621951,85622167,217,*,217,20,0.64516129,0.892269737,0.092165899,7.82E-15,CpGisland,TRUE,U13,Hc-P
4262,cg17954486,-0.00000614,0.00000512,-1.199743236,0.231155194,loss,ns,-0.00000391,0.0000087,-0.449668459,0.653263765,neg,ns,-0.003167999,0.002548314,-1.24317435,0.214742986,neg,ns,0.668081013,0.0000586,0.0000876,0.668738706,0.504159839,pos,ns,0.074884779,Rfx3,Rfx3_fiveUTR,19,28011068,28011117,28011116,28011117,50,+,GTAGTTGTTGTTGATGGGTAACAGTCGCCAGGACTACGGTGACTATGGCG,Promoter (<=1kb),19,27768139,28011140,243002,2,Rfx3-208,23,Rfx3-201;Rfx3-208;Rfx3-204;Rfx3-205;Rfx3-207,Rfx3;Rfx3;Rfx3;Rfx3;Rfx3,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,15,19726,ENSMUSG00000040929,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
19977,cg12721805,0.00000339,0.00000444,0.764532996,0.445131249,gain,ns,0.00000339,0.00000754,0.449640601,0.653283833,pos,ns,-0.004976386,0.002208571,-2.253214895,0.024944323,neg,ns,1.603028276,0.000092,0.000076,1.210800574,0.226894135,pos,ns,0.924476597,Slc22a15,Slc22a15_Exon,3,101880183,101880232,101880183,101880184,50,-,CGACCCTGGGAGTATAACCAACGAGGTGATTCAGGAATGAATCTGAAAGA,"Exon (Slc22a15-201/Slc22a15, exon 6 of 12)",3,101855776,101924393,68618,2,Slc22a15-201,44161,Slc22a15-201;Slc22a15-207;Slc22a15-203;Slc22a15-206;Slc22a15-205;Slc22a15-204,Slc22a15;Slc22a15;Slc22a15;Slc22a15;Slc22a15;Slc22a15,0;0;0;-2296;0;-3569,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,2,242126,ENSMUSG00000033147,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7858,cg27414616,0.00000115,0.00000185,0.625278385,0.532248372,gain,ns,0.00000141,0.00000314,0.449585646,0.653323422,pos,ns,0.001419824,0.000919324,1.544421033,0.123506561,pos,ns,0.908309971,-0.0000169,0.0000316,-0.535922082,0.592396709,neg,ns,0.966447524,Gtdc1,Gtdc1_threeUTR,2,44565106,44565155,44565106,44565107,50,+,CGGAAATTCAATGTGGCACCACATATGGGATACATGAGTGCGGTTATACA,3' UTR,2,44564412,44861622,297211,2,Gtdc1-203,296467,Gtdc1-203;Gtdc1-201;Gtdc1-207,Gtdc1;Gtdc1;Gtdc1,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,43,227835,ENSMUSG00000036890,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21978,cg18241155,0.0000142,0.00000776,1.827314905,0.068613695,gain,ns,0.00000593,0.0000132,0.449529726,0.653363708,pos,ns,0.026997628,0.00386317,6.988465327,1.71E-11,pos,yes,10.76776671,-0.000331448,0.000132854,-2.494824897,0.013122082,neg,ns,0.909439936,Lgr4,Lgr4_Intron,2,109943360,109943409,109943408,109943409,50,-,ATCCATTGGAGCATTTTGTCCATTTTGAAACTGAATGACACTTTTGTTCG,"Intron (Lgr4-201/Lgr4, intron 1 of 17)",2,109917647,110014257,96611,1,Lgr4-201,25713,Lgr4-201;Lgr4-202,Lgr4;Lgr4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,107515,ENSMUSG00000050199,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17986,cg06186797,-0.000000504,0.00000134,-0.375090646,0.707849547,loss,ns,0.00000103,0.00000228,0.44942495,0.653439191,pos,ns,0.000221336,0.000668202,0.331240291,0.740686787,pos,ns,0.130365402,-0.0000142,0.000023,-0.618136567,0.536939184,neg,ns,0.96321427,Arx,Arx_Intergenic_upstream,X,93253830,93253879,93253878,93253879,50,-,TAACAAAGAAAGCCCTTAATTAGTTGTAATCAACTTTAATTTGCATACCG,Distal Intergenic,20,93286445,93288382,1938,1,Arx-203,-32615,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,32,11878,ENSMUSG00000035277,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17947,cg08330816,-0.0000942,0.0000128,-7.344406231,1.84E-12,loss,yes,0.00000979,0.0000218,0.449420731,0.653442231,pos,ns,-0.01728568,0.006383186,-2.708001988,0.007144709,neg,ns,2.146015478,0.000165502,0.000219517,0.753937133,0.451459245,pos,ns,0.784699821,Gapdh-ps16,Gapdh-ps16_Promoter,8,92721986,92722035,92721986,92721987,50,+,CGTAAATTGTTTTGTTTTACAAGCTGGGGTAAATCAGCACATTTGCAGCC,Promoter (5-6kb),8,92715747,92716975,1229,2,Gapdh-ps16-201,-5011,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,3,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11626,cg24429707,0.0000336,0.0000129,2.609300076,0.009512812,gain,ns,0.00000982,0.0000218,0.449383654,0.653468943,pos,ns,0.006868433,0.006401303,1.072974153,0.284117243,pos,ns,0.546502408,-0.0000414,0.00022014,-0.187835972,0.851128125,neg,ns,0.362482472,Emx2,Emx2_Intergenic_downstream,19,59470486,59470535,59470534,59470535,50,+,TCACCTTCCAATTAGCTCGCATAATGATGAATTAAACATTCTAGCAGGCG,Distal Intergenic,19,59462802,59464215,1414,1,Emx2-203,7684,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,15,23,13797,ENSMUSG00000043969,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
6535,cg01618051,-0.0000749,0.0000122,-6.147045882,2.43E-09,loss,yes,0.0000093,0.0000207,0.449312818,0.653519979,pos,ns,-0.023137142,0.00606416,-3.81539121,0.000164116,neg,ns,3.784848725,0.000575013,0.000208546,2.757249787,0.006174621,pos,ns,0.654626707,Zfp536,Zfp536_Intron,7,37640061,37640110,37640061,37640062,50,+,CGCTAATAAGCTGGAAGTTACTTTGATAACAGCAGGGTTAGACTCGAGAA,"Intron (Zfp536-202/Zfp536, intron 4 of 6)",7,37479104,37769624,290521,2,Zfp536-202,129514,Zfp536-202;Zfp536-201;Zfp536-203;Zfp536-206;Zfp536-209;Zfp536-208,Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,73,112,243937,ENSMUSG00000043456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17654,cg07291439,0.0000278,0.00000557,4.989991883,0.00000101,gain,yes,0.00000425,0.00000947,0.449304149,0.653526225,pos,ns,-0.003248626,0.002774318,-1.170963838,0.242512609,neg,ns,0.615265676,0.000160486,0.0000954,1.682091325,0.093558103,pos,ns,0.159536395,Zic4,Zic4_Intron,9,91367287,91367336,91367287,91367288,50,-,CGCGGTCTTTGTTGCCGACCAGGCTTTTGATCGCCAGAGAAAATTTACTT,"Intron (Zic4-208/Zic4, intron 1 of 2)",9,91362413,91378915,16503,1,Zic4-208,4874,Zic1-201;Zic1-202;Zic1-203;Zic4-208;Zic4-206;Zic4-207;Zic4-211;Zic4-204;Zic4-203;Zic4-210;Zic4-209;Zic4-212,Zic1;Zic1;Zic1;Zic4;Zic4;Zic4;Zic4;Zic4;Zic4;Zic4;Zic4;Zic4,0;0;-4233;0;0;0;0;0;0;-3668;0;-4014,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,55,22774,ENSMUSG00000036972,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
16608,cg19161529,-0.00000695,0.0000122,-0.57090275,0.568479179,loss,ns,-0.00000929,0.0000207,-0.449263248,0.653555694,neg,ns,-0.010506211,0.006060527,-1.733547621,0.083992661,neg,ns,1.075758661,0.000235906,0.000208421,1.131873884,0.25856224,pos,ns,0.224562642,Six3,Six3_threeUTR,17,85624291,85624340,85624291,85624292,50,+,CGGCACCCCACCTGCATGACGATTTATTTGTATCTGGGAAAATATTCTCT,3' UTR,17,85613608,85625222,11615,1,Six3-202,10683,Six3-202;Six3-203;Six3-201,Six3;Six3;Six3,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,24,20473,ENSMUSG00000038805,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
15155,cg09942248,0.0000962,0.00000817,11.76959931,1.10E-26,gain,yes,-0.00000624,0.0000139,-0.449223789,0.653584124,neg,ns,0.012575655,0.004068758,3.090784893,0.002177453,pos,ns,2.662051126,-0.000119654,0.000139924,-0.855135591,0.393136497,neg,ns,0.124704284,Cerkl,Cerkl_Promoter,2,79456955,79457004,79457003,79457004,50,+,CCTTTGTGGCCAGAAGAAAGTGGCCCATCTGTCGCCAGTTAGAGACTCCG,Promoter (<=1kb),2,79338569,79456785,118217,2,Cerkl-210,-170,Cerkl-210;Neurod1-201,Cerkl;Neurod1,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,13,15,228094,ENSMUSG00000075256,mapped to different genes,2,79456843,79457022,180,*,180,14,0.622222222,0.830039526,0.077777778,1.72E-09,CpGisland,TRUE,U13,Hc-P
14555,cg22183626,0.0000231,0.00000394,5.865121962,1.15E-08,gain,yes,-0.000003,0.00000669,-0.449089762,0.653680695,neg,ns,0.000414717,0.001959626,0.211630858,0.832534099,pos,ns,0.07959797,-0.0000938,0.0000674,-1.392471023,0.164777778,neg,ns,0.081172938,Tsc22d1,Tsc22d1_fiveUTR,14,76415231,76415280,76415279,76415280,50,-,AATGCTCGGGCTCCATGGCTGCCAGTGATGGAGCGGTCCCTGGGCTCCCG,Promoter (<=1kb),14,76414961,76507762,92802,1,Tsc22d1-204,270,Tsc22d1-204;Tsc22d1-202;Tsc22d1-215;Tsc22d1-213;Tsc22d1-212;Tsc22d1-211;Tsc22d1-216,Tsc22d1;Tsc22d1;Tsc22d1;Tsc22d1;Tsc22d1;Tsc22d1;Tsc22d1,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,10,21807,ENSMUSG00000022010,mapped to different genes,14,76414509,76415798,1290,*,1290,173,0.753488372,0.966660458,0.134108527,1.43E-155,CpGisland,TRUE,U1,Pr-A
24313,cg09189224,-0.0000036,0.00000664,-0.541497596,0.5885536,loss,ns,0.00000507,0.0000113,0.449021514,0.653729872,pos,ns,-0.00201288,0.003307088,-0.608656225,0.543198057,neg,ns,0.265041792,0.000100226,0.00011373,0.881261737,0.378858915,pos,ns,0.87229496,Pou3f1,Pou3f1_Intron,4,124615737,124615786,124615785,124615786,50,-,ACTTTTTTATGTAAATTCGGTGCATTAACCCTCTATTATAATGATGGACG,"Intron (Gm2164-201/Gm2164-201, intron 1 of 1)",4,124656807,124660655,3849,1,Pou3f1-201,-41070,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,43,85,18991,ENSMUSG00000090125,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19397,cg27569107,0.00000429,0.00000219,1.960591442,0.050821938,gain,ns,-0.00000167,0.00000372,-0.44893262,0.653793929,neg,ns,0.001877548,0.001090279,1.72208071,0.086052354,pos,ns,1.065237243,-0.0000648,0.0000375,-1.728588051,0.084878527,neg,ns,0.93869225,Smarce1,Smarce1_Exon,11,99224997,99225046,99225045,99225046,50,-,TCCAGTTGTTTGCCGGATGCTGTAATAGTTGATTCTCCTACCGTGACCCG,"Exon (Smarce1-201/Smarce1, exon 4 of 11)",11,99209047,99231017,21971,2,Smarce1-201,5971,Smarce1-201;Smarce1-205;Smarce1-204;Smarce1-203;Smarce1-202,Smarce1;Smarce1;Smarce1;Smarce1;Smarce1,0;-4166;0;0;5400,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,57376,ENSMUSG00000037935,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14780,cg00650240,-0.0000983,0.0000204,-4.810487712,0.00000235,loss,ns,-0.0000156,0.0000347,-0.448869896,0.653839129,neg,ns,0.054927054,0.010165986,5.403023032,0.000000131,pos,ns,6.883342571,-0.002206915,0.000349607,-6.312551027,9.49E-10,neg,yes,0.498744916,Gm11146,Gm11146_Intron,16,77636703,77636752,77636703,77636704,50,-,CGATTTATGTGATGGTTGAAAAAATAAATTACCCGATTAGATGGCTGGAA,"Intron (Mir99ahg-211/Mir99ahg-211, intron 5 of 6)",16,77588578,77602094,13517,2,Gm11146-201,-34658,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,21,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4078,cg27512967,0.0000314,0.00000632,4.962291066,0.00000115,gain,yes,-0.00000482,0.0000107,-0.448862732,0.653844291,neg,ns,-0.00019391,0.003147231,-0.06161297,0.950910752,neg,ns,0.021860242,0.000122659,0.000108233,1.133287687,0.25796916,pos,ns,0.84308016,Gm12071,Gm12071_Intergenic_downstream,11,26725503,26725552,26725503,26725504,50,+,CGATGCCTGACCTGTGAAATCCTTGATGGCTGCTAACACTAGAAGCTTAC,Distal Intergenic,11,26712905,26713373,469,1,Gm12071-201,12598,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,5,606714,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4521,cg09068210,-0.0000188,0.00000795,-2.362959043,0.018746799,loss,ns,0.00000606,0.0000135,0.448616671,0.65402162,pos,ns,-0.00470375,0.003958085,-1.188390226,0.235589316,neg,ns,0.627844408,-0.0000957,0.000136118,-0.703054312,0.482549548,neg,ns,0.877223396,Ntm,Ntm_Intron,9,29419216,29419265,29419264,29419265,50,-,AAAAGAAAATCCCACAATGCAACCAGCAATGTTAATCTTCAATAAATACG,"Intron (Ntm-201/Ntm, intron 1 of 7)",9,28994750,29963129,968380,2,Ntm-201,543864,Ntm-201;Ntm-204;Ntm-210;Ntm-207,Ntm;Ntm;Ntm;Ntm,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,27,32,235106,ENSMUSG00000059974,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16628,cg12385032,-0.00000627,0.00000439,-1.426449906,0.154744826,loss,ns,0.00000335,0.00000746,0.44850985,0.654098609,pos,ns,-0.000835985,0.002186063,-0.382415639,0.702415138,neg,ns,0.153406138,0.00000305,0.0000752,0.040591607,0.967647605,pos,ns,0.857875742,Bcas3,Bcas3_Intron,11,85668060,85668109,85668108,85668109,50,-,GATGGGGAGGTTAGACTGGGGCTAGCCAGACTGCTCCACATAGACTTCCG,"Intron (Bcas3-205/Bcas3, intron 24 of 27)",11,85353167,85826058,472892,1,Bcas3-205,314893,Bcas3-205;Bcas3-206;Bcas3-201;Bcas3-202;Bcas3-216;Bcas3-212;Bcas3-203;Bcas3-207,Bcas3;Bcas3;Bcas3;Bcas3;Bcas3;Bcas3;Bcas3;Bcas3,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,24,192197,ENSMUSG00000059439,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
1737,cg20805222,-0.0000274,0.00000751,-3.649571447,0.000308144,loss,ns,0.00000572,0.0000128,0.448489474,0.654113295,pos,ns,-0.004861232,0.00373747,-1.300674424,0.194335959,neg,ns,0.711446833,0.0000368,0.000128531,0.286598313,0.774611355,pos,ns,0.859947212,Gm5513,Gm5513_Intergenic_downstream,19,14891771,14891820,14891771,14891772,50,+,CGATACAGTAATAAATTGAAGTCTAATAGCTCTGGTCAGGCTGCCTTTCC,Distal Intergenic,19,14959549,14960766,1218,2,Gm5513-201,68946,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,22,433225,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
15769,cg12040040,-0.0000223,0.00000961,-2.325420346,0.020694603,loss,ns,-0.00000732,0.0000163,-0.448442275,0.654147314,neg,ns,-0.004526659,0.00478066,-0.94686889,0.344443075,neg,ns,0.462882542,-0.0000772,0.000164407,-0.469584435,0.638982073,neg,ns,0.864839406,Dpf3,Dpf3_Exon,12,83269521,83269570,83269569,83269570,50,-,GTGGAAAGTTGACGTGTCACTTTCTGACGTGGAACCGAATAAGTCCTCCG,"Exon (Dpf3-203/Dpf3, exon 7 of 7)",12,83213745,83350895,137151,2,Dpf3-204,81325,Dpf3-204;Dpf3-207;Dpf3-202;Dpf3-203;Dpf3-201;Dpf3-206;Dpf3-205,Dpf3;Dpf3;Dpf3;Dpf3;Dpf3;Dpf3;Dpf3,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,16,70127,ENSMUSG00000021221,conserved gene and region,12,83269462,83269588,127,*,127,13,0.582677165,1.205989774,0.102362205,2.30E-10,CpGisland,TRUE,U11,Tr-P
21631,cg10712152,0.0000327,0.00000416,7.867310755,6.09E-14,gain,yes,-0.00000317,0.00000707,-0.448399424,0.6541782,neg,ns,-0.00170351,0.002071239,-0.822459562,0.41144756,neg,ns,0.385685509,-0.0000228,0.0000712,-0.319844546,0.74930163,neg,ns,0.840165048,Zfhx3,Zfhx3_Intron,8,108675009,108675058,108675009,108675010,50,-,CGTCTGTTCAGGTAAGGGCAGTGGAGAGCACAGGATGCCCCAAGCAACCC,"Intron (Zfhx3-204/Zfhx3, intron 6 of 15)",8,107942644,108961630,1018987,1,Zfhx3-204,732365,Zfhx3-204;Zfhx3-205;Zfhx3-206,Zfhx3;Zfhx3;Zfhx3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,114,177,11906,ENSMUSG00000038872,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18549,cg11393669,0.0000239,0.00000326,7.312589563,2.25E-12,gain,yes,-0.00000248,0.00000554,-0.448324184,0.654232433,neg,ns,-0.000119532,0.001623288,-0.073635842,0.941347641,neg,ns,0.026249962,0.00010175,0.0000558,1.822667893,0.069316885,pos,ns,0.092599402,Hoxb8,Hoxb8_threeUTR,11,96284633,96284682,96284633,96284634,50,+,CGCTAGTGGTAGTATCTCGTAATAGCTTCTGTGTGTGAGCTACCGTGGAT,3' UTR,11,96281905,96285315,3411,1,Hoxb8-201,2728,Hoxb7-201;Hoxb7-202;Hoxb8-201;Hoxb8-202;Hoxb8-203,Hoxb7;Hoxb7;Hoxb8;Hoxb8;Hoxb8,0;-4033;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,26,15416,ENSMUSG00000056648,mapped to different genes,11,96284489,96284707,219,*,219,27,0.730593607,0.962402344,0.123287671,1.57E-23,CpGisland,TRUE,U3,Pr-B
20526,cg14405975,-0.00000165,0.000000801,-2.056248975,0.040595407,loss,ns,-0.00000061,0.00000136,-0.44832111,0.654234648,neg,ns,0.000206192,0.00039846,0.517472588,0.605195346,pos,ns,0.218104421,-0.0000212,0.0000137,-1.549618219,0.122253441,neg,ns,0.977275116,Copz1,Copz1_Exon,15,103291019,103291068,103291067,103291068,50,+,TTGTACCGCATCCATTAGGGCAGGTAAATGGAAGTCTGTAAAGGTGACCG,"Exon (Copz1-203/Copz1, exon 3 of 4)",15,103272714,103296850,24137,1,Copz1-202,18305,Copz1-202;Copz1-203;Copz1-201;Copz1-204,Copz1;Copz1;Copz1;Copz1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,6,56447,ENSMUSG00000060992,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10142,cg07537558,0.000127343,0.0000151,8.459478595,1.08E-15,gain,yes,-0.0000115,0.0000256,-0.448235451,0.654296393,neg,ns,0.026629325,0.007492183,3.5542813,0.000438065,pos,ns,3.35846128,-0.000759704,0.000257656,-2.94852528,0.003435651,neg,ns,0.382155806,Gm28308,Gm28308_Exon,6,52202746,52202795,52202794,52202795,50,+,GAAGTGGAACTCCTTCTCCAGCTCCAGGGTCTGGTAGCGCGTGTAGGCCG,"Exon (Hoxa5-201/Hoxa5, exon 2 of 2)",6,52163359,52213339,49981,2,Gm28308-201,10544,Gm28308-201;Hoxa3-201;Hoxa3-203;Hoxa5-201;Hoxa6-201,Gm28308;Hoxa3;Hoxa3;Hoxa5;Hoxa6,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,30,103,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
15204,cg19841211,0.000025,0.00000358,6.981351974,1.78E-11,gain,yes,-0.00000273,0.00000608,-0.44814161,0.654364038,neg,ns,0.002505384,0.001781561,1.406286127,0.160640768,pos,ns,0.794144228,0.0000533,0.0000613,0.870006919,0.384969776,pos,ns,0.09061215,Rhcg,Rhcg_Exon,7,79592443,79592492,79592443,79592444,50,-,CGGCTTCCATCTTTGCCGACGTTTAATTAACATGCTCCTCTTGGCAGCTG,"Exon (Gm45169-201/Gm45169-201, exon 1 of 2)",7,79593369,79594929,1561,2,Rhcg-203,2486,Rhcg-201;Rhcg-203,Rhcg;Rhcg,25165;2437,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,9,56315,ENSMUSG00000030549,conserved gene but different region,7,79592197,79592463,267,*,267,21,0.685393258,0.717007673,0.078651685,4.16E-14,CpGisland,TRUE,U3,Pr-B
5924,cg00634704,0.0000733,0.00000915,8.011286316,2.32E-14,gain,yes,0.00000697,0.0000155,0.44801855,0.65445275,pos,ns,0.017559944,0.004555493,3.854674646,0.000140897,pos,ns,3.851097918,-0.000199976,0.000156663,-1.276471476,0.202744326,neg,ns,0.180792596,Osr2,Osr2_threeUTR,15,35302847,35302896,35302847,35302848,50,+,CGGCAAAGTGTTCAGGCGAAACTGTGATCTGCGGCGGCACAGCCTGACTC,3' UTR,15,35296098,35303304,7207,1,Osr2-203,6749,Osr2-203;Osr2-201;Osr2-205;Osr2-204,Osr2;Osr2;Osr2;Osr2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,6,107587,ENSMUSG00000022330,conserved gene but different region,15,35302838,35302979,142,*,142,12,0.654929578,0.815311005,0.084507042,1.33E-08,CpGisland,TRUE,NA,NRS
4168,cg05928102,-0.0000131,0.00000466,-2.807723025,0.00530558,loss,ns,0.00000355,0.00000791,0.447956613,0.654497401,pos,ns,-0.00654771,0.002318481,-2.824137411,0.005047856,neg,ns,2.296893035,0.000187446,0.0000797,2.350941383,0.019352065,pos,ns,0.855382038,Itpr3,Itpr3_Exon,17,27117175,27117224,27117223,27117224,50,+,AAGATCGTGTTTGTGGTGAGCTTCGTGGGCAACCGTGGCACCTTCATCCG,"Exon (Itpr3-201/Itpr3, exon 51 of 58)",17,27057304,27122223,64920,1,Itpr3-201,59871,Itpr3-201,Itpr3,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,16440,ENSMUSG00000042644,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16578,cg00567001,-0.00000228,0.00000564,-0.40516257,0.685637471,loss,ns,-0.00000429,0.00000958,-0.447954799,0.654498709,neg,ns,-0.008800621,0.0028052,-3.137253109,0.001869176,neg,ns,2.728349788,0.000210554,0.0000965,2.182573748,0.029817391,pos,ns,0.845000786,Gm5231,Gm5231_Intergenic_downstream,17,85528603,85528652,85528651,85528652,50,-,AGCACAAAAAAATCAATTATTTCCCCACAAAGACTTGAAAGTACTTAGCG,Distal Intergenic,17,85541625,85542703,1079,2,Gm5231-201,14100,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,11,383282,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11341,cg18185386,0.0000318,0.00000532,5.970054944,6.49E-09,gain,yes,-0.00000405,0.00000905,-0.447925812,0.654519607,neg,ns,0.006007405,0.002649945,2.26699203,0.024079255,pos,ns,1.618356949,-0.0000778,0.0000911,-0.853994253,0.393767601,neg,ns,0.034149736,Pcdh7,Pcdh7_Exon,5,57717726,57717775,57717774,57717775,50,+,GGCTTTTCTTCGGAAATCCAGACAGAATTGGGCATCTTTGTTAATTGCCG,Promoter (<=1kb),5,57717967,58133230,415264,1,Pcdh7-203,-192,Pcdh7-203;Pcdh7-201;Pcdh7-202;Pcdh7-205;Pcdh7-206;Pcdh7-207;Pcdh7-204,Pcdh7;Pcdh7;Pcdh7;Pcdh7;Pcdh7;Pcdh7;Pcdh7,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,13,54216,ENSMUSG00000029108,conserved gene but different region,5,57717711,57717828,118,*,118,10,0.56779661,1.063063063,0.084745763,0.000000309,CpGisland,TRUE,U3,Pr-B
13915,cg03472204,0.0000449,0.00000895,5.021008995,0.000000869,gain,yes,0.00000681,0.0000152,0.447859428,0.654567466,pos,ns,-0.004325236,0.004453492,-0.971201057,0.332205329,neg,ns,0.478593405,0.000243398,0.000153155,1.589221567,0.113029691,pos,ns,0.639224406,Slc38a6,Slc38a6_Intron,12,73367822,73367871,73367870,73367871,50,-,TCGGCACCTGGTTCAAATTTAAGGCTCATTTACACATGATGTCACACACG,"Intron (D830013O20Rik-201/D830013O20Rik-201, intron 1 of 2)",12,73344367,73351865,7499,1,Slc38a6-207,23504,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,7,625098,ENSMUSG00000044712,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8137,cg15079688,-0.00000577,0.00000707,-0.815988316,0.41513336,loss,ns,0.00000537,0.000012,0.447654068,0.654715529,pos,ns,0.004450449,0.003517089,1.265378397,0.206685978,pos,ns,0.684688986,-0.0000949,0.000120952,-0.784890238,0.433117328,neg,ns,0.841107359,Ebf1,Ebf1_Intron,11,44784752,44784801,44784800,44784801,50,+,AATAAACACATTTAACAGCACGCTGAATTGCTGAAGTATCATTTTCAACG,"Intron (Ebf1-203/Ebf1, intron 6 of 15)",11,44617317,45004995,387679,1,Ebf1-203,167435,Ebf1-203;Ebf1-202;Ebf1-201,Ebf1;Ebf1;Ebf1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,80,13591,ENSMUSG00000057098,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14132,cg18039229,0.000000127,0.000000591,0.214529792,0.830274987,gain,ns,-0.000000449,0.000001,-0.447607679,0.654748976,neg,ns,-0.000303758,0.000293988,-1.033232957,0.30230027,neg,ns,0.519561465,0.0000101,0.0000101,0.998581298,0.318776378,pos,ns,0.0158867,Hoxd10,Hoxd10_Exon,2,74694222,74694271,74694222,74694223,50,+,CGCGAGCGCCGCCTAGAGATCAGTAAGAGCGTTAACCTCACCGACAGGCA,"Exon (Hoxd10-201/Hoxd10, exon 2 of 2)",2,74691924,74695105,3182,1,Hoxd10-201,2298,Hoxd10-201;Hoxd9-201,Hoxd10;Hoxd9,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,21,24,15430,ENSMUSG00000050368,conserved gene and region,2,74694222,74694348,127,*,127,12,0.519685039,1.400735294,0.094488189,3.59E-09,CpGisland,TRUE,U13,Hc-P
15507,cg19051359,-0.0000671,0.0000115,-5.853637146,1.22E-08,loss,yes,-0.00000872,0.0000195,-0.447573936,0.654773306,neg,ns,-0.006310471,0.005706762,-1.105788319,0.269675572,neg,ns,0.569158392,-0.000370708,0.000196255,-1.888908158,0.059837408,neg,ns,0.777679209,Cyp2c73-ps,Cyp2c73-ps_Intergenic_downstream,14,81441318,81441367,81441366,81441367,50,+,AGACTGATTATTTCTTGTCCTTGACACCCTGCCAAGGGCTAGATACATCG,Distal Intergenic,14,81370045,81371091,1047,1,Cyp2c73-ps-201,71273,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,639207,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7183,cg17503252,-0.00000177,0.00000121,-1.461259986,0.144956959,loss,ns,-0.000000919,0.00000205,-0.447570179,0.654776015,neg,ns,-0.000254894,0.000601734,-0.423598647,0.672152293,neg,ns,0.172532315,0.0000259,0.0000207,1.250588472,0.212027761,pos,ns,0.030228075,Jade1,Jade1_Intron,3,41565386,41565435,41565434,41565435,50,-,GGCTTCCTGTGACAGAGGTGATACACAGTTTCCAGAACTGTCTGGGGGCG,"Intron (Jade1-201/Jade1, intron 1 of 10)",3,41555731,41616864,61134,1,Jade1-201,9655,Jade1-201;Jade1-210;Jade1-214;Jade1-202;Jade1-209;Jade1-204;Jade1-203;Jade1-211;Jade1-206,Jade1;Jade1;Jade1;Jade1;Jade1;Jade1;Jade1;Jade1;Jade1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,16,269424,ENSMUSG00000025764,conserved gene but different region,3,41565434,41565946,513,*,513,74,0.764132554,0.995672358,0.144249513,1.13E-69,CpGisland,TRUE,U1,Pr-A
21793,cg21598257,-0.000000159,0.00000758,-0.020946408,0.983301882,loss,ns,-0.00000576,0.0000129,-0.447449094,0.654863326,neg,ns,-0.003373662,0.003771121,-0.894604621,0.371692528,neg,ns,0.429816169,0.0000646,0.000129689,0.497948435,0.618873442,pos,ns,0.823893911,Lmo1,Lmo1_Intron,7,109166153,109166202,109166153,109166154,50,+,CGTTAAAAGCAATCCAAATCATGAATCATATGGGAAACTTTTAGCAAGAC,"Intron (Lmo1-201/Lmo1, intron 1 of 3)",7,109138572,109170519,31948,2,Lmo1-201,4317,Lmo1-201;Lmo1-202;Lmo1-203,Lmo1;Lmo1;Lmo1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,66,109594,ENSMUSG00000036111,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2499,cg19142435,-0.00000937,0.00000544,-1.721091599,0.086231924,loss,ns,0.00000414,0.00000925,0.447369344,0.654920834,pos,ns,-0.005886891,0.002708723,-2.173308352,0.030513923,neg,ns,1.515501958,0.000119516,0.0000932,1.2830056,0.200448489,pos,ns,0.805109412,Pkhd1,Pkhd1_Intergenic_downstream,1,20018492,20018541,20018540,20018541,50,+,CGAGGCAAAGCCATCACAGCCTGCTGGTAAATGGCAGTTCTTTCCCTCCG,Distal Intergenic,1,20374722,20409448,34727,2,Pkhd1-203,390907,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,25,241035,ENSMUSG00000043760,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25368,cg23649217,0.00000619,0.00000384,1.612074428,0.10796332,gain,ns,0.00000292,0.00000652,0.447247957,0.65500837,pos,ns,0.002816292,0.001911068,1.473674487,0.141583947,pos,ns,0.848985984,-0.0000344,0.0000657,-0.523236687,0.601183353,neg,ns,0.92925253,Gm9341,Gm9341_Intergenic_downstream,7,136073529,136073578,136073529,136073530,50,+,CGTGGTAATGTATGATGACAGTAATTTGAATAAAAATGAATTTACTGCTC,Distal Intergenic,7,135952798,135953783,986,1,Gm9341-201,120731,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,27,28,668764,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19603,cg12652676,-0.00000442,0.00000232,-1.902788024,0.057994551,loss,ns,0.00000176,0.00000394,0.447109567,0.655108174,pos,ns,-0.002550879,0.001155282,-2.208013641,0.027975137,neg,ns,1.553227775,0.000087,0.0000397,2.190750727,0.029214135,pos,ns,0.946766796,Hnrnpdl,Hnrnpdl_threeUTR,5,100035627,100035676,100035675,100035676,50,+,GACCATACCACAGGACAGCGTTTTCTGGTGTATGCCTTGCGCTCTGCCCG,Promoter (<=1kb),5,100033577,100036068,2492,2,Hnrnpdl-203,392,Enoph1-202;Enoph1-201;Enoph1-203;Hnrnpdl-203;Hnrnpdl-202;Hnrnpdl-207;Hnrnpdl-201;Hnrnpdl-204;Hnrnpdl-205;Hnrnpdl-206,Enoph1;Enoph1;Enoph1;Hnrnpdl;Hnrnpdl;Hnrnpdl;Hnrnpdl;Hnrnpdl;Hnrnpdl;Hnrnpdl,0;0;0;0;0;0;0;0;0;1447,TRUE,FALSE,TRUE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,8,8,50926,ENSMUSG00000029328,conserved gene and region,5,100035645,100035745,101,*,101,9,0.613861386,0.945889698,0.089108911,0.000001,CpGisland,TRUE,U12,Tr-I
25475,cg05940554,0.00000658,0.00000493,1.334538674,0.183006761,gain,ns,-0.00000374,0.00000837,-0.446900107,0.655259243,neg,ns,-0.00124479,0.00245344,-0.507365268,0.612259297,neg,ns,0.213064611,-0.00001,0.0000844,-0.118661632,0.905620289,neg,ns,0.815351918,Ephb2,Ephb2_Intron,4,136825354,136825403,136825354,136825355,50,+,CGGCTTCCCATGGACTCAGGCCAAGTGACAAGTTGGTGCCGTGGACATAT,"Intron (Ephb2-202/Ephb2, intron 1 of 15)",4,136647539,136835988,188450,2,Ephb2-202,10585,Ephb2-202;Ephb2-201;Ephb2-203;Ephb2-204,Ephb2;Ephb2;Ephb2;Ephb2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,15,13844,ENSMUSG00000028664,conserved gene and region,4,136825264,136825469,206,*,206,11,0.577669903,0.641199774,0.053398058,0.00000611,CpGisland,TRUE,U11,Tr-P
19029,cg05641937,-0.000000102,0.00000723,-0.014105986,0.988754499,loss,ns,0.00000549,0.0000123,0.446895452,0.6552626,pos,ns,-0.007538264,0.003598475,-2.094849849,0.03699569,neg,ns,1.431848863,0.000217518,0.000123751,1.757707468,0.079784252,pos,ns,0.770877586,Gm765,Gm765_Intron,6,98222192,98222241,98222240,98222241,50,+,TGTTTTACAGTCTTCGTGAGCCCATATAGATTCTGGCTTCTGCCCAGTCG,"Intron (Gm32592-201/Gm32592-201, intron 2 of 4)",6,98341463,98342659,1197,2,Gm765-202,120418,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,10,330390,ENSMUSG00000090667,mapped to different genes,6,98221954,98222264,311,*,311,18,0.572347267,0.706728948,0.057877814,6.45E-10,CpGisland,TRUE,U15,NS
4207,cg03537644,-0.0000494,0.00000965,-5.123695336,0.000000528,loss,yes,0.00000732,0.0000164,0.446772466,0.655351309,pos,ns,-0.019223896,0.004802236,-4.003113843,0.0000783,neg,ns,4.106351892,0.000515559,0.000165148,3.121789546,0.001966982,pos,ns,0.832798002,Pld3,Pld3_Exon,7,27541732,27541781,27541780,27541781,50,+,GATGCAAGTCGCCGTATTCCCATAGAAACAGCTGAGTCATCAGGGCTCCG,"Exon (Pld3-201/Pld3, exon 6 of 14)",7,27532000,27553212,21213,2,Pld3-201,11431,Pld3-201;Pld3-202;Pld3-205;Pld3-204;Pld3-203;Pld3-207;Pld3-206,Pld3;Pld3;Pld3;Pld3;Pld3;Pld3;Pld3,0;0;-3792;0;0;0;11370,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,18807,ENSMUSG00000003363,conserved gene and region,7,27541512,27541822,311,*,311,13,0.604501608,0.457611771,0.041800643,0.00000907,CpGisland,TRUE,NA,NRS
4884,cg22432848,-0.00000159,0.00000226,-0.70141285,0.483571612,loss,ns,0.00000172,0.00000384,0.446725886,0.655384907,pos,ns,0.000515108,0.001125111,0.457828572,0.647396337,pos,ns,0.188829762,-0.0000457,0.0000387,-1.179907028,0.238941833,neg,ns,0.943530538,Aplp2,Aplp2_Exon,9,31167593,31167642,31167641,31167642,50,-,TCAGACTCAAAATTGTTCCTGTTGCCGCCGCAGCCACCATATATAAAGCG,"Exon (Aplp2-201/Aplp2, exon 7 of 17)",9,31149557,31211787,62231,2,Aplp2-209,44145,Aplp2-209;Aplp2-201;Aplp2-202;Aplp2-203;Aplp2-208;Aplp2-206,Aplp2;Aplp2;Aplp2;Aplp2;Aplp2;Aplp2,0;0;0;0;0;2932,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,11804,ENSMUSG00000031996,conserved gene and region,9,31167618,31167704,87,*,87,9,0.620689655,1.0875,0.103448276,0.000000274,CpGisland,TRUE,U10,Tr-S
12961,cg15169047,-0.000000993,0.00000138,-0.720352969,0.471850504,loss,ns,0.00000105,0.00000234,0.446684308,0.655414898,pos,ns,-0.000638844,0.000686356,-0.930775207,0.352694123,neg,ns,0.452601778,0.0000215,0.0000236,0.911998192,0.36247833,pos,ns,0.962820467,Brinp1,Brinp1_Exon,4,68762665,68762714,68762665,68762666,50,+,CGATCACCATGTGGATGAAGTCCATGCGGTTCTTGTTGCTCTTGAGAGTG,"Exon (Brinp1-201/Brinp1, exon 8 of 8)",4,68761514,68954397,192884,2,Brinp1-201,191683,Brinp1-201,Brinp1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,7,56710,ENSMUSG00000028351,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15092,cg09428649,-0.0000364,0.00000559,-6.511425027,3.00E-10,loss,yes,-0.00000424,0.00000949,-0.446561406,0.655503555,neg,ns,-0.00198141,0.002780008,-0.712735341,0.47654567,neg,ns,0.321895473,-0.0000393,0.0000956,-0.411422637,0.681046949,neg,ns,0.937541248,Zfp827,Zfp827_Exon,8,79076121,79076170,79076121,79076122,50,+,CGCCACTTCAGCCTGAAACTCCACATGCGTTGCCATCAGCACTTCCTGAG,"Exon (Zfp827-202/Zfp827, exon 4 of 15)",8,79028437,79193743,165307,1,Zfp827-202,47684,Zfp827-201;Zfp827-202;Zfp827-203;Zfp827-209,Zfp827;Zfp827;Zfp827;Zfp827,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,28,622675,ENSMUSG00000071064,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19741,cg14419060,-0.0000198,0.00000941,-2.103309961,0.036244308,loss,ns,0.00000714,0.000016,0.446489001,0.655555786,pos,ns,-0.010614734,0.004682648,-2.266823174,0.024089698,neg,ns,1.618168653,0.000142537,0.000161036,0.885123046,0.376776294,pos,ns,0.774396816,Cd101,Cd101_Intron,3,101007451,101007500,101007499,101007500,50,-,TCCCCATAGAGTTGTACAGTTTCTGTTCACAGTGGGAGAAATATGCTTCG,"Intron (Cd101-201/Cd101, intron 7 of 8)",3,100993529,101029556,36028,2,Cd101-201,22056,Cd101-201;Cd101-202,Cd101;Cd101,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,630146,ENSMUSG00000086564,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20918,cg14800351,0.000111657,0.00000838,13.32304136,2.50E-32,gain,yes,-0.00000636,0.0000142,-0.446363417,0.655646386,neg,ns,0.000577836,0.004171171,0.138530877,0.889910813,pos,ns,0.050653516,0.000477221,0.000143446,3.326826461,0.000984067,pos,ns,0.324855325,Pax6,Pax6_Intron,2,105690008,105690057,105690056,105690057,50,-,GAAAAGTCTGTTGACTGGGCTTCTTGTAACACAATGTGGCCCGCTGCACG,"Intron (Pax6-206/Pax6, intron 7 of 12)",2,105668900,105697364,28465,1,Pax6-206,21108,Pax6-206;Pax6-207;Pax6-210;Pax6-208;Pax6-202;Pax6-205;Pax6-225;Pax6-204;Pax6-201;Pax6-203;Pax6-224;Pax6-219;Pax6-213;Pax6-211;Pax6-222;Pax6-212;Pax6-215;Pax6-223;Pax6-216;Pax6-218,Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;-2426,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,78,18508,ENSMUSG00000027168,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
17474,cg02763383,-0.00000443,0.00000333,-1.328689275,0.184927708,loss,ns,-0.00000253,0.00000566,-0.446085759,0.655846711,neg,ns,-0.002120728,0.00165885,-1.278432531,0.202053275,neg,ns,0.694534106,-0.0000406,0.000057,-0.712163888,0.476898921,neg,ns,0.913973427,Tox3,Tox3_Intergenic_upstream,8,90441270,90441319,90441270,90441271,50,+,CGCATGCATAAGTCTGACACATTTATTGCTATGGCAACAATTCAGGCACT,Distal Intergenic,8,90247040,90348343,101304,2,Tox3-201,-92927,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,19,244579,ENSMUSG00000043668,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1518,cg23446200,0.0000478,0.00000753,6.346032853,7.83E-10,gain,yes,0.00000571,0.0000128,0.446025902,0.6558899,pos,ns,-0.001572475,0.003750227,-0.419301352,0.675286313,neg,ns,0.170512053,0.0000487,0.00012897,0.377429432,0.70611276,pos,ns,0.649898475,Gm11819,Gm11819_Intergenic_upstream,4,13408509,13408558,13408509,13408510,50,+,CGAAAGAGTCTGACACAGATGGTGTAATTAGAAAATGCGAAGTGCGAGTG,Distal Intergenic,4,13444770,13445141,372,1,Gm11819-201,-36212,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,19,22,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25627,cg04516501,-0.0000181,0.00000492,-3.683570484,0.000271303,loss,ns,-0.00000373,0.00000837,-0.446002167,0.655907026,neg,ns,-0.000970559,0.002450915,-0.395998738,0.69237837,neg,ns,0.159656508,-0.00012479,0.0000843,-1.480536175,0.139745811,neg,ns,0.886994185,Epo,Epo_Exon,5,137528711,137528760,137528759,137528760,50,+,GCATCCCAGATGTTGCAGTTGAAGTCGTCGTAGCCAGCGAGCAGCAGCCG,"Exon (Gnb2-201/Gnb2, exon 9 of 10)",5,137483020,137533242,50223,2,Epo-202,4482,Epo-202;Gigyf1-201;Gnb2-201;Gnb2-213;Gnb2-209;Gnb2-203;Gnb2-204;Gnb2-202;Gnb2-212;Gnb2-214;Gnb2-215;Gnb2-208;Gnb2-205;Gnb2-210;Gnb2-211;Gnb2-206;Gnb2-207,Epo;Gigyf1;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,9,13856,ENSMUSG00000029711,mapped to different genes,5,137528696,137528879,184,*,184,15,0.597826087,0.917248255,0.081521739,1.96E-10,CpGisland,TRUE,U10,Tr-S
11170,cg24937610,0.0000273,0.00000823,3.317114168,0.001017693,gain,ns,0.00000623,0.000014,0.445980434,0.655922708,pos,ns,0.00373199,0.004095105,0.911329462,0.362829909,pos,ns,0.44029692,0.00000553,0.00014083,0.03927851,0.968693623,pos,ns,0.793866426,Trpc7,Trpc7_Exon,13,56831369,56831418,56831369,56831370,50,+,CGATAGACTGTTGACGTAAGCCTGAGAGATTTTCATACCACATGGTAAGC,"Exon (Trpc7-201/Trpc7, exon 4 of 12)",13,56773113,56895737,122625,2,Trpc7-201,64319,Trpc7-201;Trpc7-202;Trpc7-203;Trpc7-204;Trpc7-205;Trpc7-206;Trpc7-208;Trpc7-207,Trpc7;Trpc7;Trpc7;Trpc7;Trpc7;Trpc7;Trpc7;Trpc7,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,5,26946,ENSMUSG00000021541,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18392,cg15834945,-0.00000605,0.0000019,-3.184888945,0.001595394,loss,ns,0.00000144,0.00000323,0.445958096,0.655938826,pos,ns,-0.00000754,0.00094586,-0.007970147,0.993645936,neg,ns,0.002768339,-0.0000265,0.0000325,-0.816139381,0.415047096,neg,ns,0.956803977,Kifc3,Kifc3_Exon,8,95103428,95103477,95103428,95103429,50,+,CGCTCTGCACTTGGAACTCAGTCAGCCCTGGTACATACAGCTGCCCACTG,"Exon (Kifc3-202/Kifc3, exon 10 of 16)",8,95099828,95110424,10597,2,Kifc3-202,6947,Katnb1-201;Katnb1-205;Kifc3-202;Kifc3-201;Kifc3-203;Kifc3-208;Kifc3-212;Kifc3-204,Katnb1;Katnb1;Kifc3;Kifc3;Kifc3;Kifc3;Kifc3;Kifc3,22242;20832;0;0;0;-1163;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,16582,ENSMUSG00000031788,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
114,cg08670658,-0.00000073,0.000000762,-0.958040838,0.338788732,loss,ns,0.000000577,0.0000013,0.445748134,0.656090336,pos,ns,0.000427616,0.000379422,1.12701821,0.260606389,pos,ns,0.584014941,0.00000552,0.000013,0.42295943,0.672618114,pos,ns,0.977530744,Grk2,Grk2_threeUTR,19,4286961,4287010,4287009,4287010,50,-,AGGCTGGGGCCACGGGAAATCACAATAATTACAAAATAAAACCTTTTCCG,3' UTR,19,4286001,4305955,19955,2,Grk2-201,18945,Ankrd13d-201;Ankrd13d-202;Ankrd13d-205;Ankrd13d-204;Grk2-201;Grk2-203;Grk2-202;Grk2-209;Grk2-204;Grk2-207;Grk2-205;Grk2-208,Ankrd13d;Ankrd13d;Ankrd13d;Ankrd13d;Grk2;Grk2;Grk2;Grk2;Grk2;Grk2;Grk2;Grk2,-3826;-3824;-3824;-3928;0;0;0;0;2393;2384;3473;4801,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,5,110355,ENSMUSG00000024858,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22525,cg11727505,0.0000211,0.00000701,3.010710344,0.002820615,gain,ns,-0.00000531,0.0000119,-0.445731407,0.656102407,neg,ns,-0.006705413,0.00348787,-1.92249486,0.055459652,neg,ns,1.256022862,0.0000743,0.000119948,0.619303419,0.536171359,pos,ns,0.762145812,Foxe3,Foxe3_Promoter,4,114929221,114929270,114929269,114929270,50,-,TCAGCGTGGCTGGGCCCTCTTTTCACAGGCCCTGGGCCGGACGTGATGCG,Promoter (3-4kb),4,114925147,114926013,867,2,Foxe3-201,-3257,Foxe3-201,Foxe3,-3208,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,4,4,30923,ENSMUSG00000044518,conserved gene and region,4,114929197,114929293,97,*,97,9,0.649484536,0.881818182,0.092783505,0.000000708,CpGisland,TRUE,U13,Hc-P
17987,cg15838663,-0.000000392,0.000000263,-1.488498256,0.137636088,loss,ns,-0.000000199,0.000000447,-0.445674708,0.656143324,neg,ns,-0.000303743,0.000131066,-2.317472179,0.021129057,neg,ns,1.67511988,0.0000046,0.00000451,1.020383533,0.308342244,pos,ns,0.993259098,Sned1,Sned1_Exon,1,93259735,93259784,93259783,93259784,50,+,GTGGGTGTGCCCGGGCGCTGGGCGTTCAGAATCGATGATGCCCAGGTGCG,"Exon (Sned1-201/Sned1, exon 4 of 31)",1,93235841,93301065,65225,1,Sned1-201,23894,Sned1-201;Sned1-206,Sned1;Sned1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,208777,ENSMUSG00000047793,conserved gene and region,1,93259656,93259798,143,*,143,14,0.671328671,0.878455463,0.097902098,7.28E-11,CpGisland,TRUE,NA,NRS
4972,cg06718000,-0.0000138,0.00000455,-3.024018284,0.002702881,loss,ns,-0.00000344,0.00000773,-0.445645225,0.6561646,neg,ns,-0.002623526,0.002263561,-1.159026125,0.247337544,neg,ns,0.606709957,-0.0000789,0.0000778,-1.013870204,0.311435347,neg,ns,0.058700396,Sap130,Sap130_Promoter,18,31634776,31634825,31634824,31634825,50,+,GTTTGGCTCCTGGAGCAGTTTAAAGTGACTCTCCACATCCGGGCCCTGCG,Promoter (<=1kb),18,31634371,31636611,2241,1,Sap130-204,405,Sap130-204;Sap130-202;Sap130-208;Sap130-205;Sap130-201;Sap130-207;Sap130-203;Sap130-206,Sap130;Sap130;Sap130;Sap130;Sap130;Sap130;Sap130;Sap130,0;0;0;0;0;-260;-303;-354,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,1,4,269003,ENSMUSG00000024260,conserved gene and region,18,31634815,31635070,256,*,256,24,0.6953125,0.776541962,0.09375,6.77E-18,CpGisland,TRUE,U1,Pr-A
9733,cg23981308,-0.0000268,0.0000381,-0.703643695,0.482182853,loss,ns,0.0000289,0.0000648,0.445567653,0.656220583,pos,ns,0.006186807,0.018976751,0.326020346,0.74462893,pos,ns,0.128060095,-0.001358686,0.000652609,-2.081930393,0.038168832,neg,ns,0.32691962,Slc7a11,Slc7a11_Exon,3,50381897,50381946,50381897,50381898,50,-,CGTTCATGGAGCCAAAGCAGGAGAGGGCAACAAAGATCGGAACTGCTAAT,"Exon (Slc7a11-205/Slc7a11, exon 8 of 12)",3,49892526,50443614,551089,2,Slc7a11-205,61668,Slc7a11-205;Slc7a11-201,Slc7a11;Slc7a11,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,26570,ENSMUSG00000027737,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
11018,cg18757967,0.0000268,0.0000102,2.630081894,0.00896253,gain,ns,-0.00000772,0.0000173,-0.445525373,0.656251097,neg,ns,0.005142619,0.005077669,1.012791248,0.311949709,pos,ns,0.505915415,-0.0000333,0.000174621,-0.190464624,0.849069728,neg,ns,0.611476861,Mbip,Mbip_Intergenic_downstream,12,56298191,56298240,56298191,56298192,50,-,CGAACCAGACAGGCCCACTTGAGCTGGAGAAACAATGGCCTGTAGCCGGT,Distal Intergenic,12,56340511,56345821,5311,2,Mbip-202,47630,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,12,13,217588,ENSMUSG00000021028,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22732,cg07439922,-0.00000404,0.00000343,-1.175399721,0.240736794,loss,ns,0.0000026,0.00000583,0.445475025,0.656287433,pos,ns,0.00149673,0.001708717,0.875937607,0.381742167,pos,ns,0.418229866,-0.0000988,0.0000588,-1.681550782,0.093663064,neg,ns,0.943220643,Meis2,Meis2_threeUTR,2,115864289,115864338,115864337,115864338,50,-,TGGGGCTCTGTGCTGACATAGTCATTCCAGGGTGGGTAGGGGGTCCTCCG,3' UTR,2,115863064,116065047,201984,2,Meis2-201,200709,Meis2-201;Meis2-203;Meis2-205;Meis2-206;Meis2-204;Meis2-202;Meis2-208;Meis2-219;Meis2-216;Meis2-218;Meis2-214;Meis2-207;Meis2-215,Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,97,17536,ENSMUSG00000027210,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13775,cg14529563,-0.0000205,0.00000507,-4.037041339,0.0000683,loss,ns,0.00000384,0.00000862,0.445438994,0.656313438,pos,ns,0.002787817,0.002524447,1.104327805,0.270307391,pos,ns,0.56814208,-0.000206881,0.0000868,-2.382992999,0.017774738,neg,ns,0.925731428,Robo1,Robo1_Intron,16,72557347,72557396,72557347,72557348,50,+,CGATGAGAATTGATCCAATTTGTAGAACACAATTCTCATATTGATAGTAG,"Intron (Robo1-205/Robo1, intron 1 of 1)",16,72308306,72742417,434112,1,Robo1-205,249041,Robo1-205,Robo1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,8,19876,ENSMUSG00000022883,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19396,cg18808591,-0.00000126,0.0000016,-0.786511421,0.432168751,loss,ns,-0.00000121,0.00000272,-0.445377995,0.656357464,neg,ns,0.004115894,0.000797974,5.157931887,0.000000446,pos,ns,6.35041942,-0.0000889,0.0000274,-3.238207777,0.001333212,neg,ns,0.959425978,Foxn3,Foxn3_Intron,12,99220610,99220659,99220610,99220611,50,+,CGCCTGTGCCCTGTCCAAATAAATGAAGTGTGCAATTGAAGTCGACATCA,"Intron (Foxn3-201/Foxn3, intron 4 of 5)",12,99190078,99393797,203720,2,Foxn3-201,173138,Foxn3-201;Foxn3-209;Foxn3-202;Foxn3-212;Foxn3-211;Foxn3-206;Foxn3-204,Foxn3;Foxn3;Foxn3;Foxn3;Foxn3;Foxn3;Foxn3,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,17,71375,ENSMUSG00000033713,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22503,cg03370106,-0.00000399,0.00000132,-3.031243921,0.002640863,loss,ns,0.000000996,0.00000224,0.445369665,0.656363477,pos,ns,0.000930237,0.000654968,1.420279536,0.156531253,pos,ns,0.805398937,-0.0000225,0.0000225,-0.997363563,0.319365934,neg,ns,0.039437943,Vgll4,Vgll4_Exon,6,114875031,114875080,114875079,114875080,50,+,GTACTAACCTCACTTTAATCATTGCCAAAGAGCATGAAGACAGCCCAGCG,Promoter (<=1kb),6,114860628,114875107,14480,2,Vgll4-205,27,Vgll4-205;Vgll4-201;Vgll4-206;Vgll4-204;Vgll4-203,Vgll4;Vgll4;Vgll4;Vgll4;Vgll4,0;0;-11;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,232334,ENSMUSG00000030315,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
18867,cg11531787,0.0000017,0.00000244,0.696728695,0.486494704,gain,ns,0.00000185,0.00000415,0.445332075,0.656390607,pos,ns,0.001165974,0.001215955,0.958895614,0.338358592,pos,ns,0.470622791,-0.0000471,0.0000418,-1.127085005,0.260578193,neg,ns,0.046970649,Nfia,Nfia_Intron,4,97778155,97778204,97778203,97778204,50,+,GTGGGCACATGGCTAATGGCGCCCTCTTATTAATGCGTTAATTAATATCG,"Intron (Nfia-208/Nfia, intron 1 of 3)",4,97772734,98000466,227733,1,Nfia-208,5421,E130114P18Rik-204;E130114P18Rik-205;Nfia-208;Nfia-202;Nfia-203;Nfia-205;Nfia-201;Nfia-204,E130114P18Rik;E130114P18Rik;Nfia;Nfia;Nfia;Nfia;Nfia;Nfia,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,44,18027,ENSMUSG00000028565,conserved gene and region,4,97778125,97778952,828,*,828,100,0.736714976,0.893550894,0.120772947,6.58E-85,CpGisland,TRUE,U1,Pr-A
25039,cg13936550,0.00000632,0.00000466,1.356745727,0.175849164,gain,ns,0.00000352,0.00000791,0.445321424,0.656398295,pos,ns,0.000402211,0.002318414,0.173485244,0.862383251,pos,ns,0.064299687,0.0000167,0.0000797,0.209418318,0.834259247,pos,ns,0.719771808,Fgfr2,Fgfr2_Intron,7,131776514,131776563,131776514,131776515,50,+,CGAGGGGGTGTTCTCGGCAACAGATGTTTGGTAATTAAGCATACGGTTTC,"Intron (Fgfr2-217/Fgfr2, intron 2 of 6)",7,130162451,133123350,2960900,2,Fgfr2-217,1346787,Fgfr2-217,Fgfr2,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,58,79,14183,ENSMUSG00000030849,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10653,cg03908972,0.000057,0.0000192,2.964561712,0.003266278,gain,ns,-0.0000145,0.0000327,-0.445255412,0.656445942,neg,ns,0.056234786,0.009570156,5.876057121,1.08E-08,pos,ns,7.965022405,-0.002155507,0.000329117,-6.549365138,2.40E-10,neg,yes,0.593234253,Enpp2,Enpp2_Exon,15,54865984,54866033,54865984,54865985,50,+,CGTTTGGGAAGGTGCTGTTTCAAGTAAGGCTTAAAGTGCTGATCTGGTTT,"Exon (Enpp2-201/Enpp2, exon 15 of 25)",15,54838901,54920002,81102,2,Enpp2-201,53969,Enpp2-201;Enpp2-204;Enpp2-202;Enpp2-203;Enpp2-209;Enpp2-207,Enpp2;Enpp2;Enpp2;Enpp2;Enpp2;Enpp2,0;0;0;0;-3298;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,18606,ENSMUSG00000022425,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21818,cg22780775,0.00000864,0.0000143,0.602452405,0.547313456,gain,ns,0.0000108,0.0000244,0.445185174,0.65649664,pos,ns,-0.011528683,0.007137619,-1.615200134,0.107284633,neg,ns,0.969462481,0.000785369,0.000245462,3.199551156,0.001518904,pos,ns,0.895790499,Lmo1,Lmo1_Intergenic_upstream,7,109196406,109196455,109196454,109196455,50,+,CACTGGGAGGGAACTGATTGGACACAGCTCACAGGCAGTATGTTAATACG,Distal Intergenic,7,109138675,109175207,36533,2,Lmo1-202,-21199,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,34,66,109594,ENSMUSG00000036111,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21352,cg12651099,0.000053,0.00000504,10.50346792,2.81E-22,gain,yes,-0.00000381,0.00000857,-0.445169251,0.656508133,neg,ns,0.002638122,0.002510519,1.050827171,0.294156441,pos,ns,0.531421638,0.00011941,0.0000863,1.383073293,0.167637716,pos,ns,0.044492939,Kcnc4,Kcnc4_Exon,3,107458739,107458788,107458739,107458740,50,+,CGGTAGGTCTCATGTCGCGTGCCGCCCACGTTGATGATGATCTTCTCCGA,Promoter (<=1kb),3,107438303,107459552,21250,2,Kcnc4-201,764,Kcnc4-201;Kcnc4-202,Kcnc4;Kcnc4,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,12,99738,ENSMUSG00000027895,conserved gene and region,3,107458518,107458984,467,*,467,47,0.665952891,0.908861284,0.100642398,4.28E-36,CpGisland,TRUE,NA,NRS
23963,cg09520943,-0.00000304,0.00000155,-1.965850041,0.050208174,loss,ns,0.00000117,0.00000263,0.44513698,0.656531427,pos,ns,0.000399634,0.00076985,0.519106573,0.604056817,pos,ns,0.21892221,0.00000382,0.0000265,0.144221991,0.885418888,pos,ns,0.963754993,Erp29,Erp29_threeUTR,5,121429334,121429383,121429382,121429383,50,+,TACTGCAGGCAAACAGCTCGCCGAGGTGTCCCATGGGGGTTTAAAAGCCG,3' UTR,5,121428590,121452487,23898,2,Erp29-204,23104,Erp29-204;Naa25-201;Naa25-205;Naa25-202;Naa25-203,Erp29;Naa25;Naa25;Naa25;Naa25,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,11,11,67397,ENSMUSG00000029616,mapped to different genes,5,121429273,121429444,172,*,172,10,0.523255814,0.856147337,0.058139535,0.00000923,CpGisland,TRUE,U10,Tr-S
9847,cg25574355,-0.0000125,0.000005,-2.502478738,0.01284735,loss,ns,0.00000378,0.00000849,0.445068863,0.656580597,pos,ns,0.002620541,0.002487148,1.053632774,0.292871606,pos,ns,0.533322732,-0.000117856,0.0000855,-1.377904546,0.169226568,neg,ns,0.937279058,Gm7172,Gm7172_Intergenic_downstream,12,51106565,51106614,51106565,51106566,50,-,CGTGCAGCTTTGTGGTATCCCGGGAGGATTTTATTTCCAAATATAAAATT,Distal Intergenic,12,51133551,51134702,1152,2,Gm7172-201,28137,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,3,636070,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25555,cg17398139,0.0000134,0.000012,1.112632936,0.266728158,gain,ns,-0.00000908,0.0000204,-0.444838424,0.65674695,neg,ns,0.010982429,0.005980735,1.836300971,0.067270626,pos,ns,1.172174529,-0.000196642,0.000205677,-0.956070725,0.339781474,neg,ns,0.366830188,Jag1,Jag1_Intergenic_upstream,2,137215709,137215758,137215709,137215710,50,-,CGATCTATAAACAGTGTCAGATGGTGTCTCACACATGGCACTTAAGAAAC,Distal Intergenic,2,137081456,137116644,35189,2,Jag1-201,-99114,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,16,16449,ENSMUSG00000027276,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2613,cg01343704,0.000000139,0.00000131,0.105606186,0.915963117,gain,ns,0.000000993,0.00000223,0.444787935,0.6567834,pos,ns,-0.000728131,0.000654071,-1.113229859,0.266472172,neg,ns,0.574348138,0.0000373,0.0000225,1.657306296,0.098469187,pos,ns,0.959656315,Zswim8,Zswim8_Exon,14,20719558,20719607,20719558,20719559,50,+,CGCAACCTGCACCTTTGCGCCTTCGAGATTGGGCTTTATGCCCTTGGCCT,"Exon (Zswim8-201/Zswim8, exon 19 of 26)",14,20707552,20723619,16068,1,Zswim8-201,12006,Ndst2-202;Ndst2-205;Ndst2-201;Ndst2-204;Ndst2-207;Zswim8-201;Zswim8-208;Zswim8-204;Zswim8-211;Zswim8-203;Zswim8-213;Zswim8-209;Zswim8-207;Zswim8-202;Zswim8-210;Zswim8-214,Ndst2;Ndst2;Ndst2;Ndst2;Ndst2;Zswim8;Zswim8;Zswim8;Zswim8;Zswim8;Zswim8;Zswim8;Zswim8;Zswim8;Zswim8;Zswim8,0;0;0;0;0;0;0;0;0;0;0;0;957;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,13,14,268721,ENSMUSG00000021819,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24084,cg11202337,0.0000407,0.00000783,5.19543958,0.000000371,gain,yes,0.00000592,0.0000133,0.444550719,0.656954667,pos,ns,0.023650108,0.003898479,6.066496805,3.80E-09,pos,ns,8.41967387,-0.000534426,0.000134068,-3.98621737,0.0000838,neg,ns,0.139820394,Zic5,Zic5_Intergenic_downstream,14,122454074,122454123,122454122,122454123,50,+,ATTTTTCACCATTCACACAGTACTTGTATTAAATAAACAAAGAACAATCG,Downstream (2-3kb),14,122459193,122460021,829,2,Zic5-202,5898,Zic5-201,Zic5,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,14,26,65100,ENSMUSG00000041703,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6762,cg22270635,0.000153868,0.0000101,15.17107327,2.88E-39,gain,yes,-0.00000766,0.0000172,-0.44451751,0.656978644,neg,ns,0.013738125,0.005047886,2.721560093,0.006864777,pos,ns,2.163373564,0.000173044,0.000173596,0.996815841,0.319631343,pos,ns,0.342588295,Lhx2,Lhx2_Intron,2,38357326,38357375,38357326,38357327,50,+,CGAAGTCAGATTTGATTACAGGTTCAGTCCCAGCGACAAGAGCTCGAAAC,"Intron (Lhx2-203/Lhx2, intron 3 of 4)",2,38339281,38369199,29919,1,Lhx2-203,18045,Lhx2-203;Lhx2-204;Lhx2-202;Lhx2-201;Lhx2-207;Lhx2-205;Lhx2-206,Lhx2;Lhx2;Lhx2;Lhx2;Lhx2;Lhx2;Lhx2,0;0;0;0;5558;4794;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,33,16870,ENSMUSG00000000247,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
16882,cg15164437,-0.0000166,0.00000442,-3.761681433,0.000201764,loss,ns,0.00000334,0.0000075,0.444405321,0.657059651,pos,ns,-0.003333887,0.002198611,-1.51636057,0.130447229,neg,ns,0.884565143,-0.0000364,0.0000756,-0.481442307,0.63054184,neg,ns,0.041565152,Irf2bpl,Irf2bpl_Promoter,12,86894641,86894690,86894689,86894690,50,-,TGCAATGCAGATTTGCTGTGCCTGTGCGCAGAAGGAACTGATAAATGCCG,Promoter (9-10kb),12,86880701,86884798,4098,2,Irf2bpl-201,-9892,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,5,6,238330,ENSMUSG00000034168,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14290,cg10654522,0.000215569,0.0000175,12.34598845,9.42E-29,gain,yes,-0.0000132,0.0000297,-0.44434785,0.657101149,neg,ns,0.015917359,0.008690363,1.831610445,0.067968941,pos,ns,1.167689498,0.000105966,0.000298861,0.354566688,0.723155311,pos,ns,0.634002265,Gsx2,Gsx2_Intergenic_downstream,5,75082615,75082664,75082663,75082664,50,-,ACTAGTTTCAGATTAATGAAGCAGTGACAATTTCAATCTGCTTAAAGGCG,Distal Intergenic,5,75075602,75077625,2024,1,Gsx2-202,7062,Gsx2-201;Gsx2-202,Gsx2;Gsx2,7014;7013,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,10,14843,ENSMUSG00000035946,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
11516,cg23577322,-0.0000239,0.00000343,-6.977739679,1.82E-11,loss,yes,0.00000259,0.00000582,0.44428441,0.65714696,pos,ns,-0.004285656,0.00170598,-2.512136673,0.012507987,neg,ns,1.902812594,-0.0000339,0.0000587,-0.578047177,0.563651922,neg,ns,0.91072613,Neo1,Neo1_Exon,9,58884596,58884645,58884596,58884597,50,-,CGAGGGAATGGATGGGATGGGCACTAATCACAGCTGTGAATGAACACAAG,"Exon (Neo1-201/Neo1, exon 26 of 29)",9,58874687,59036441,161755,2,Neo1-201,151796,Neo1-201;Neo1-202;Neo1-204,Neo1;Neo1;Neo1,0;0;9289,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,3,18007,ENSMUSG00000032340,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14221,cg10664719,0.00000463,0.0000107,0.432169011,0.665919033,gain,ns,0.00000809,0.0000182,0.444153012,0.657241846,pos,ns,-0.010565046,0.005337392,-1.97943983,0.048650877,neg,ns,1.31290933,0.000285121,0.000183552,1.553349937,0.121359842,pos,ns,0.714920507,Onecut1,Onecut1_Intergenic_upstream,9,74847056,74847105,74847104,74847105,50,+,CAGCTGCCCTGAAACCTTAATTGAATGACAGATGGTCATTTTCGGGGGCG,Distal Intergenic,9,74861921,74891781,29861,1,Onecut1-201,-14816,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,28,15379,ENSMUSG00000043013,conserved gene and region,9,74847098,74847297,200,*,200,16,0.73,0.614439324,0.08,5.65E-11,CpGisland,TRUE,NA,NRS
15522,cg20272981,-0.00000304,0.00000917,-0.331537753,0.740462347,loss,ns,0.00000691,0.0000156,0.444076213,0.657297307,pos,ns,-0.004700788,0.004561831,-1.03046091,0.303596982,neg,ns,0.51770255,0.000167899,0.000156881,1.070231283,0.285347783,pos,ns,0.810910397,Gm7503,Gm7503_Intergenic_upstream,18,81548185,81548234,81548185,81548186,50,-,CGTCCTCAGCAAATCGCCTCTGAAATGTAAAAATTTAATTTGTCAACATG,Distal Intergenic,18,80997003,80997383,381,2,Gm7503-201,-550851,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,17,21,665124,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22079,cg17489004,-0.0000127,0.00000666,-1.905240543,0.057673904,loss,ns,0.00000503,0.0000113,0.44397651,0.657369312,pos,ns,0.004665673,0.003315913,1.407055077,0.16041284,pos,ns,0.794760872,-0.00038762,0.000114034,-3.399164466,0.000764305,neg,ns,0.52440081,Wdr20,Wdr20_Exon,12,110738224,110738273,110738272,110738273,50,+,TGCTTCAATGTGGGCCGGGAGCTGTACTTCTATATCTACAAGGGGGTCCG,Promoter (<=1kb),12,110737944,110804238,66295,1,Wdr20-205,280,Wdr20-205;Wdr20-204;Wdr20-203;Wdr20-201;Wdr20-202;Wdr20-207,Wdr20;Wdr20;Wdr20;Wdr20;Wdr20;Wdr20,0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,8,69641,ENSMUSG00000037957,conserved gene and region,12,110737489,110738785,1297,*,1297,129,0.68080185,0.867167335,0.099460293,3.23E-97,CpGisland,TRUE,U1,Pr-A
11881,cg03110309,0.000000257,0.000000845,0.304556854,0.760908038,gain,ns,-0.000000638,0.00000144,-0.443960244,0.65738106,neg,ns,-0.00042735,0.000420734,-1.015725988,0.31055197,neg,ns,0.507865712,0.0000131,0.0000145,0.904544438,0.366409198,pos,ns,0.987827137,Tle3,Tle3_Exon,9,61394679,61394728,61394679,61394680,50,+,CGGGGTACGTGGACTCCCCAATCTGCCTCTTACCGTGTGTATAGCCCTTT,"Exon (Tle3-218/Tle3, exon 6 of 20)",9,61372366,61418497,46132,1,Tle3-218,22313,Tle3-218;Tle3-204;Tle3-201;Tle3-215;Tle3-212;Tle3-208;Tle3-207;Tle3-217;Tle3-202;Tle3-206;Tle3-210;Tle3-205;Tle3-211;Tle3-209;Tle3-213,Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,30,21887,ENSMUSG00000032280,conserved gene but different region,9,61394624,61394713,90,*,90,8,0.622222222,0.923076923,0.088888889,0.00000534,CpGisland,TRUE,U10,Tr-S
23516,cg02210084,0.000000428,0.00000196,0.21893656,0.826843539,gain,ns,-0.00000147,0.00000332,-0.443796885,0.657499044,neg,ns,-0.000478031,0.00097334,-0.491124118,0.623686169,neg,ns,0.205033887,-0.000015,0.0000335,-0.447015013,0.655176367,neg,ns,0.966606683,Cacna1c,Cacna1c_Exon,6,118742278,118742327,118742278,118742279,50,-,CGAGAACCAGATTTAGAACGAAAAAGGATCCAAAGATGACCAGACTGACA,"Exon (Cacna1c-207/Cacna1c, exon 8 of 47)",6,118587240,119196231,608992,2,Cacna1c-207,453904,Cacna1c-207;Cacna1c-205;Cacna1c-215;Cacna1c-224;Cacna1c-225;Cacna1c-226;Cacna1c-227;Cacna1c-202;Cacna1c-201;Cacna1c-203;Cacna1c-212;Cacna1c-216;Cacna1c-210;Cacna1c-206;Cacna1c-208;Cacna1c-213;Cacna1c-217;Cacna1c-219;Cacna1c-220;Cacna1c-209;Cacna1c-204;Cacna1c-214;Cacna1c-222,Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,13,15,12288,ENSMUSG00000051331,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
561,cg25560333,-0.00000245,0.00000116,-2.116993834,0.03505665,loss,ns,0.000000873,0.00000197,0.443597219,0.657643262,pos,ns,0.00000714,0.000576576,0.012387751,0.990124226,pos,ns,0.004310313,-0.000024,0.0000198,-1.209832003,0.227265119,neg,ns,0.033699535,Celf2,Celf2_Exon,2,6872377,6872426,6872377,6872378,50,+,CGGCCCTCGACCATCATGTCCGGGAGGAAATCCAGCTTGAAGGCAGAAGT,"Exon (Celf2-228/Celf2, exon 1 of 14)",2,6539694,7396000,856307,2,Celf2-201,523574,Celf2-201;Celf2-204;Celf2-214;Celf2-206;Celf2-226;Celf2-223;Celf2-221;Celf2-225;Celf2-228;Celf2-217;Celf2-210;Celf2-209;Celf2-219;Celf2-207;Celf2-218;Celf2-203,Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,24,14007,ENSMUSG00000002107,conserved gene and region,2,6871950,6872914,965,*,965,153,0.786528497,1.030579908,0.158549223,3.14E-151,CpGisland,TRUE,U3,Pr-B
8329,cg16271487,-0.000036,0.00000583,-6.177356583,2.05E-09,loss,yes,0.00000439,0.0000099,0.443557147,0.657672207,pos,ns,-0.001518,0.002899606,-0.523519473,0.600986836,neg,ns,0.221135041,0.000146494,0.0000997,1.469090386,0.142822318,pos,ns,0.778706575,Zeb2,Zeb2_Intron,2,45024042,45024091,45024090,45024091,50,+,TAATAAACACGGGGCATTAGCTCAGCTAGAGAAACACACCAGCCGTTACG,"Intron (Zeb2-212/Zeb2, intron 3 of 10)",2,44983632,45117395,133764,2,Zeb2-212,93304,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-227;Zeb2-216;Zeb2-229;Zeb2-218;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12092,cg11723052,0.00000181,0.00000653,0.276667549,0.782219766,gain,ns,0.00000492,0.0000111,0.443406929,0.65778072,pos,ns,0.007042524,0.003251936,2.165639976,0.031100975,pos,ns,1.507225995,-0.000153311,0.000111834,-1.3708797,0.171404136,neg,ns,0.900134011,Gm11481,Gm11481_Intergenic_upstream,4,62824889,62824938,62824937,62824938,50,+,CACATTCAGACAGTCTCAAAGTAGAAACAGATGTCTGAAAAATATGAACG,Distal Intergenic,4,62939521,62939775,255,1,Gm11481-201,-114583,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,5,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20359,cg07048205,0.000110111,0.00000847,13.0065437,3.67E-31,gain,yes,-0.00000638,0.0000144,-0.443314616,0.657847408,neg,ns,0.007093843,0.004213512,1.683594049,0.093266808,pos,ns,1.030272888,-0.000140618,0.000144902,-0.970431158,0.332588169,neg,ns,0.148135832,Hoxc5,Hoxc5_Exon,15,103010781,103010830,103010781,103010782,50,+,CGGTACCAGACCCTGGAACTGGAGAAGGAATTTCACTTCAATCGCTACCT,"Exon (Hoxc6-201/Hoxc6, exon 2 of 2)",15,102967443,103015676,48234,1,Hoxc5-202,43338,Hoxc5-202;Hoxc5-201;Hoxc6-202;Hoxc6-203;Hoxc6-201,Hoxc5;Hoxc5;Hoxc6;Hoxc6;Hoxc6,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,72,134,15424,ENSMUSG00000022485,mapped to different genes,15,103010738,103010782,45,*,45,8,0.711111111,1.411764706,0.177777778,1.77E-08,CpGisland,TRUE,U13,Hc-P
22832,cg01674533,-0.0000148,0.00000403,-3.675775508,0.000279363,loss,ns,-0.00000304,0.00000685,-0.443292223,0.657863584,neg,ns,-0.001856852,0.002007045,-0.925167159,0.355598588,neg,ns,0.449039972,0.0000839,0.000069,1.215872616,0.224958517,pos,ns,0.906548026,Cit,Cit_threeUTR,5,115986554,115986603,115986602,115986603,50,+,CCAAGCTGGACAGAGGCCGGTGGAAGAATTTGAGCTGTGCCTTCCCGACG,3' UTR,5,115845644,116006353,160710,1,Cit-212,140910,Cit-212;Cit-201;Cit-202;Cit-203;Cit-213;Cit-216;Cit-204;Cit-205;Cit-208,Cit;Cit;Cit;Cit;Cit;Cit;Cit;Cit;Cit,0;0;0;0;0;0;0;0;-571,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,9,12704,ENSMUSG00000029516,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11442,cg06536156,-0.0000299,0.00000694,-4.308401084,0.0000221,loss,ns,-0.00000523,0.0000118,-0.443273311,0.657877248,neg,ns,-0.000506593,0.003455758,-0.146593774,0.883547953,neg,ns,0.053769875,-0.000142422,0.000118843,-1.198400104,0.231676649,neg,ns,0.930956387,Gfra1,Gfra1_Exon,19,58270110,58270159,58270158,58270159,50,+,CTGACAGACCTTGACTCTGGCTGGCAGTTGGTAAAAAAATCCGCAAGGCG,"Exon (Gfra1-201/Gfra1, exon 7 of 11)",19,58235604,58455398,219795,2,Gfra1-201,185239,Gfra1-201;Gfra1-203;Gfra1-209;Gfra1-208;Gfra1-207,Gfra1;Gfra1;Gfra1;Gfra1;Gfra1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,14585,ENSMUSG00000025089,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14108,cg26222446,0.0000995,0.0000107,9.276941274,3.09E-18,gain,yes,-0.00000807,0.0000182,-0.443183803,0.657941912,neg,ns,0.010032928,0.005335656,1.880355173,0.060997121,pos,ns,1.214690666,0.0000191,0.000183493,0.10408493,0.917169257,pos,ns,0.047369302,Hoxd11,Hoxd11_Intron,2,74682229,74682278,74682229,74682230,50,+,CGTGACATAATTACCACCAGAATCAATCAAGATGAATTGCACGTCAGCGC,"Intron (Hoxd11-201/Hoxd11, intron 1 of 1)",2,74679557,74687016,7460,1,Hoxd11-201,2672,Hoxd11-201;Hoxd11-202;Hoxd12-201,Hoxd11;Hoxd11;Hoxd12,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,14,15431,ENSMUSG00000042499,conserved gene and region,2,74681954,74682230,277,*,277,35,0.722021661,0.986166209,0.126353791,8.09E-31,CpGisland,TRUE,NA,NRS
10488,cg18976483,0.0000854,0.000011,7.750091141,1.32E-13,gain,yes,-0.00000829,0.0000187,-0.443137273,0.657975529,neg,ns,0.018112197,0.005482671,3.303535248,0.0010665,pos,ns,2.972039121,-0.000444405,0.000188549,-2.356978426,0.019045899,neg,ns,0.314579343,Npas3,Npas3_Intron,12,53838731,53838780,53838779,53838780,50,+,ATGAATGAGGATATGCTATCTGCAAGGAATCATATTTCAAGCCACTGTCG,"Intron (Npas3-204/Npas3, intron 4 of 10)",12,53248157,54069532,821376,1,Npas3-204,590574,Npas3-204;Npas3-201;Npas3-203,Npas3;Npas3;Npas3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,83,103,27386,ENSMUSG00000021010,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10094,cg19949881,0.00012496,0.0000182,6.852439062,3.92E-11,gain,yes,0.0000137,0.000031,0.443113559,0.657992662,pos,ns,0.038374697,0.009076185,4.228064426,0.0000311,pos,ns,4.507886779,-0.000699957,0.000312129,-2.242521447,0.025634286,neg,ns,0.605085018,Gm28308,Gm28308_threeUTR,6,52169366,52169415,52169366,52169367,50,+,CGGATGGGGATAAATAATATTTAAAACTTAGATTATTCAATGCTTGCAAA,3' UTR,6,52163359,52213339,49981,2,Gm28308-201,43924,Gm28308-201;Hoxa2-201;Hoxa3-201;Hoxa3-202,Gm28308;Hoxa2;Hoxa3;Hoxa3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,103,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
13914,cg06682189,0.0000377,0.00000788,4.785698938,0.00000264,gain,ns,-0.00000593,0.0000134,-0.443067812,0.658025714,neg,ns,-0.007152862,0.003923465,-1.823098071,0.069251541,neg,ns,1.159570558,0.000229476,0.000134928,1.700735204,0.089995561,pos,ns,0.716958136,Slc38a6,Slc38a6_Intron,12,73367809,73367858,73367809,73367810,50,-,CGCCAGACAGCTCTCGGCACCTGGTTCAAATTTAAGGCTCATTTACACAT,"Intron (D830013O20Rik-201/D830013O20Rik-201, intron 1 of 2)",12,73344367,73351865,7499,1,Slc38a6-207,23491,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,7,625098,ENSMUSG00000044712,conserved gene and region,12,73367627,73367810,184,*,184,13,0.608695652,0.762998405,0.070652174,2.47E-08,CpGisland,TRUE,NA,NRS
20992,cg12212178,-0.00000171,0.00000187,-0.915669831,0.36055182,loss,ns,0.0000014,0.00000317,0.44299671,0.658077085,pos,ns,0.0000821,0.000929073,0.088313985,0.929684148,pos,ns,0.031664574,-0.0000327,0.000032,-1.024449077,0.30642195,neg,ns,0.955760866,Immp1l,Immp1l_Intron,2,105918242,105918291,105918290,105918291,50,+,TGTAATGGGATTATCGGTAACACCTTCACTGCAGAAAAAGCCACCTGGCG,"Intron (Immp1l-201/Immp1l, intron 2 of 6)",2,105904638,105965558,60921,1,Immp1l-201,13604,Immp1l-201,Immp1l,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,7,66541,ENSMUSG00000042670,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1168,cg22347547,-0.0000118,0.0000136,-0.865441033,0.387466016,loss,ns,-0.0000103,0.0000232,-0.442768974,0.658241638,neg,ns,-0.005944709,0.006792406,-0.875199413,0.382142996,neg,ns,0.417774095,0.0000752,0.00023359,0.32189397,0.747749971,pos,ns,0.265411786,Shisa9,Shisa9_Exon,16,11985009,11985058,11985009,11985010,50,-,CGACCCCACCAAGGACAAGACCAACCTGATCGTCTACATCATCTGCGGGG,Promoter (<=1kb),16,11984113,11995390,11278,1,Shisa9-204,896,Shisa9-204;Shisa9-206;Shisa9-202;Shisa9-201;Shisa9-203;Shisa9-205,Shisa9;Shisa9;Shisa9;Shisa9;Shisa9;Shisa9,0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,72555,ENSMUSG00000022494,conserved gene and region,16,11984126,11985055,930,*,930,108,0.701075269,0.95067723,0.116129032,1.48E-89,CpGisland,TRUE,U3,Pr-B
8709,cg24012221,0.0000839,0.0000103,8.17426835,7.69E-15,gain,yes,-0.00000772,0.0000174,-0.442648123,0.658328967,neg,ns,0.015878105,0.00510758,3.108733545,0.002053213,pos,ns,2.687565959,-0.000342332,0.000175649,-1.948949683,0.052203212,neg,ns,0.026169555,Kcnn2,Kcnn2_Exon,18,45560564,45560613,45560612,45560613,50,+,CATGTTCGGCATCGTGGTCATGGTCATCGAGACCGAGCTGTCGTGGGGCG,"Exon (Kcnn2-205/Kcnn2, exon 4 of 11)",18,45269005,45685883,416879,1,Kcnn2-205,291559,Gm31907-202;Kcnn2-205;Kcnn2-201;Kcnn2-207;Kcnn2-206;Kcnn2-202;Kcnn2-208;Kcnn2-203,Gm31907;Kcnn2;Kcnn2;Kcnn2;Kcnn2;Kcnn2;Kcnn2;Kcnn2,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,8,140492,ENSMUSG00000054477,conserved gene but different region,18,45559636,45560643,1008,*,1008,101,0.691468254,0.851522248,0.100198413,1.25E-76,CpGisland,TRUE,U3,Pr-B
27621,cg08187246,0.00000703,0.0000177,0.396356392,0.692114817,gain,ns,-0.0000133,0.0000301,-0.442518722,0.65842248,neg,ns,-0.002450744,0.008822594,-0.277780443,0.78136607,neg,ns,0.107145451,0.0000648,0.000303408,0.213693844,0.83092629,pos,ns,0.230481204,Kcnj9,Kcnj9_Exon,1,172326108,172326157,172326156,172326157,50,-,TCACCATGGAGCCCAGGATGGCCTGCAGCAGCAGCAGCACGATGCCCTCG,"Exon (Kcnj9-201/Kcnj9, exon 3 of 4)",1,172320501,172329318,8818,2,Kcnj9-201,3161,Kcnj9-201;Kcnj9-202;Kcnj9-203,Kcnj9;Kcnj9;Kcnj9,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,6,16524,ENSMUSG00000038026,conserved gene and region,1,172326147,172326620,474,*,474,54,0.660337553,1.059875776,0.113924051,1.44E-44,CpGisland,TRUE,U3,Pr-B
6363,cg11320338,-0.00000117,0.0000016,-0.734106992,0.463438404,loss,ns,0.0000012,0.00000271,0.442491818,0.658441923,pos,ns,0.000842481,0.000794494,1.060399049,0.289788562,pos,ns,0.53791876,-0.0000315,0.0000273,-1.152224224,0.250116721,neg,ns,0.960856992,Btaf1,Btaf1_Exon,19,37000155,37000204,37000155,37000156,50,+,CGCCAGTTTGCTGCTCGATATGGTAAACCTATATTAGCAAGTAGGGATGC,"Exon (Btaf1-201/Btaf1, exon 31 of 38)",19,36926079,37012752,86674,1,Btaf1-201,74076,Btaf1-201,Btaf1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,107182,ENSMUSG00000040565,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24012,cg23367420,0.000000878,0.00000444,0.197765494,0.84335816,gain,ns,-0.00000334,0.00000754,-0.442368907,0.658530751,neg,ns,0.005845895,0.00220887,2.64655483,0.008546825,pos,ns,2.068195179,-0.000152572,0.000076,-2.008501842,0.045456967,neg,ns,0.886478501,Cux2,Cux2_Intron,5,121889683,121889732,121889731,121889732,50,-,TTGTTGTGTGCATGCTAATGAGTCCATCTGCACTGCCTTTGTACAACACG,"Intron (Cux2-202/Cux2, intron 5 of 22)",5,121856366,122049851,193486,2,Cux2-202,160119,Cux2-202;Cux2-201;Cux2-210;Cux2-204;Cux2-206;Cux2-207;Cux2-205,Cux2;Cux2;Cux2;Cux2;Cux2;Cux2;Cux2,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,21,13048,ENSMUSG00000042589,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16520,cg22738179,0.000000751,0.00000212,0.354790616,0.722987701,gain,ns,-0.00000159,0.00000359,-0.442179679,0.658667516,neg,ns,0.00093874,0.001053153,0.891362231,0.37342618,pos,ns,0.427795238,-0.0000316,0.0000362,-0.87262655,0.383542054,neg,ns,0.049137877,Tent5a,Tent5a_Exon,9,85326593,85326642,85326593,85326594,50,-,CGCTGCACTTGCTCCCAGTTCAGCACATTGCAGTGCGCCGTAGGGCTTTC,Promoter (<=1kb),9,85320439,85327124,6686,2,Tent5a-201,482,Tent5a-201;Tent5a-202,Tent5a;Tent5a,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,6,212943,ENSMUSG00000032265,conserved gene and region,9,85326429,85326781,353,*,353,34,0.654390935,0.905811321,0.096317281,1.44E-25,CpGisland,TRUE,U1,Pr-A
20022,cg24282768,-0.00000588,0.0000063,-0.93327485,0.351404405,loss,ns,0.00000473,0.0000107,0.442161568,0.658680606,pos,ns,0.013941153,0.003135394,4.446379828,0.0000122,pos,ns,4.914322201,-0.000480279,0.000107826,-4.454208652,0.0000118,neg,ns,0.841683303,Zfp740,Zfp740_threeUTR,15,102215506,102215555,102215554,102215555,50,-,GTTATAAACTTGTATCTTTTTACCATTAAAGTGCAGTGTATGTTCCTTCG,3' UTR,15,102203648,102215605,11958,1,Zfp740-201,11858,Itgb7-203;Itgb7-201;Itgb7-204;Zfp740-201;Zfp740-202;Zfp740-209;Zfp740-212;Zfp740-203;Zfp740-204,Itgb7;Itgb7;Itgb7;Zfp740;Zfp740;Zfp740;Zfp740;Zfp740;Zfp740,1518;16389;1095;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,5,68744,ENSMUSG00000046897,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26305,cg24381667,0.0000652,0.00000562,11.59693583,4.52E-26,gain,yes,-0.00000422,0.00000955,-0.44215877,0.658682629,neg,ns,0.004575025,0.002798054,1.635073891,0.103048521,pos,ns,0.986958236,-0.000181199,0.0000962,-1.883075134,0.060626305,neg,ns,0.87864217,Ralgapa2,Ralgapa2_Intron,2,146325387,146325436,146325387,146325388,50,-,CGGTTAATGTTAACATTGCTCCAGGTGTCTCTACTTAGATGCAAACAAAA,"Intron (Ralgapa2-202/Ralgapa2, intron 37 of 40)",2,146239879,146512004,272126,2,Ralgapa2-202,186568,Ralgapa2-202;Ralgapa2-211;Ralgapa2-210;Ralgapa2-205;Ralgapa2-208,Ralgapa2;Ralgapa2;Ralgapa2;Ralgapa2;Ralgapa2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,26,241694,ENSMUSG00000037110,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26009,cg06081084,-0.00000176,0.0000012,-1.465237991,0.143869468,loss,ns,0.000000903,0.00000204,0.442089257,0.658732873,pos,ns,0.000144419,0.000598098,0.241464348,0.809354884,pos,ns,0.091861008,-0.0000287,0.0000206,-1.397232895,0.163342799,neg,ns,0.964853791,C2cd5,C2cd5_Exon,6,143019345,143019394,143019345,143019346,50,+,CGCCTTATGGTCTGAGCTTTCAGTTTAATGAGCTCTATCCAGCTGCTGCA,"Exon (C2cd5-207/C2cd5, exon 25 of 28)",6,143010920,143100107,89188,2,C2cd5-201,80713,C2cd5-201;C2cd5-203;C2cd5-217;C2cd5-202;C2cd5-213;C2cd5-204;C2cd5-207;C2cd5-216,C2cd5;C2cd5;C2cd5;C2cd5;C2cd5;C2cd5;C2cd5;C2cd5,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,8,74741,ENSMUSG00000030279,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21606,cg14726609,0.000000444,0.00000328,0.135471738,0.892326831,gain,ns,0.00000246,0.00000557,0.442026184,0.658778464,pos,ns,0.004051621,0.001630625,2.484704215,0.01349337,pos,ns,1.869879573,-0.000159515,0.0000561,-2.844559332,0.004743106,neg,ns,0.911032433,Qrich1,Qrich1_fiveUTR,9,108528607,108528656,108528655,108528656,50,+,AATATGAATAATTCCCTAGAGAACACCATCTCCTTTGAAGAGTACATCCG,5' UTR,9,108516806,108533894,17089,1,Qrich1-214,11801,Qrich1-214;Qrich1-213;Qrich1-206;Qrich1-202;Qrich1-201;Qrich1-205;Qrich1-207;Qrich1-209;Qrich1-212;Qrich1-204;Qrich1-211,Qrich1;Qrich1;Qrich1;Qrich1;Qrich1;Qrich1;Qrich1;Qrich1;Qrich1;Qrich1;Qrich1,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,2,69232,ENSMUSG00000006673,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24339,cg03425039,0.0000447,0.00000903,4.949451166,0.00000122,gain,yes,-0.00000678,0.0000153,-0.441795266,0.658945388,neg,ns,0.017764568,0.004494831,3.952221624,0.0000959,pos,ns,4.017964037,-0.000613143,0.000154577,-3.966589879,0.0000906,neg,ns,0.213429004,Pou3f1,Pou3f1_Intergenic_downstream,4,124672523,124672572,124672571,124672572,50,+,TCAGAGCTTTTAATTAGGTTAATTAAATTGTATCAAATCTCGCAGGGACG,Distal Intergenic,4,124656807,124660655,3849,1,Pou3f1-201,15716,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,11,85,18991,ENSMUSG00000090125,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
22614,cg27151981,-0.00000959,0.00000356,-2.693412038,0.00745741,loss,ns,0.00000267,0.00000605,0.441769723,0.658963853,pos,ns,-0.000985773,0.001772349,-0.55619572,0.5784783,neg,ns,0.237712928,0.0000216,0.000061,0.353603311,0.723876549,pos,ns,0.918092913,Zfc3h1,Zfc3h1_Exon,10,115431709,115431758,115431709,115431710,50,-,CGTTTATATCAGAGAGCCTTACAGAAGTTACCTCTTTGTGCATCACTGTG,"Exon (Zfc3h1-201/Zfc3h1, exon 34 of 35)",10,115384959,115432772,47814,1,Zfc3h1-201,46750,Zfc3h1-201;Zfc3h1-202;Zfc3h1-204;Zfc3h1-203,Zfc3h1;Zfc3h1;Zfc3h1;Zfc3h1,0;0;3202;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,216345,ENSMUSG00000034163,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23937,cg23500474,0.000042,0.0000161,2.614587664,0.009370002,gain,ns,-0.000012,0.0000273,-0.441671352,0.659034969,neg,ns,0.037732472,0.007989948,4.722492595,0.00000354,pos,ns,5.451596928,-0.000813675,0.000274774,-2.961256908,0.003300544,neg,ns,0.53783243,Insig2,Insig2_Exon,1,121227363,121227412,121227363,121227364,50,+,CGCCTCTCTATGGTGTGTGAACATTAAATCCGACACTTGTACTACATGGG,"Exon (Gm29359-201/Gm29359-201, exon 2 of 2)",1,121305893,121307318,1426,2,Insig2-206,79906,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,17,72999,ENSMUSG00000003721,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7891,cg20950377,0.0000565,0.00000823,6.867217175,3.58E-11,gain,yes,-0.00000618,0.000014,-0.441651061,0.659049638,neg,ns,0.016431625,0.004097342,4.010313343,0.000076,pos,ns,4.118929174,-0.000271448,0.000140907,-1.926428787,0.0549649,neg,ns,0.140436438,Ebf1,Ebf1_Exon,11,44620430,44620479,44620430,44620431,50,+,CGGGCTCACTTTGAGAAGCAGCCGCCTTCCAATCTGCGGAAATCCAACTT,"Exon (Ebf1-203/Ebf1, exon 2 of 16)",11,44617317,45004995,387679,1,Ebf1-203,3113,Ebf1-203;Ebf1-202;Ebf1-201;Ebf1-207;Ebf1-204;Ebf1-205,Ebf1;Ebf1;Ebf1;Ebf1;Ebf1;Ebf1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,15,80,13591,ENSMUSG00000057098,conserved gene and region,11,44620336,44620646,311,*,311,21,0.620578778,0.704530744,0.067524116,9.07E-13,CpGisland,TRUE,U3,Pr-B
12173,cg05860955,-0.000000702,0.00000134,-0.52241984,0.601751169,loss,ns,-0.00000101,0.00000228,-0.441544902,0.659126388,neg,ns,-0.000729316,0.000668937,-1.090262265,0.276444363,neg,ns,0.558392262,0.0000369,0.000023,1.605716684,0.109354319,pos,ns,0.965517932,Map2k5,Map2k5_Intron,9,63206778,63206827,63206826,63206827,50,-,CATCTGCTACTCTGGACCTCAAAACATCAGGGATCTCGTGGGCCCAGACG,"Intron (Map2k5-201/Map2k5, intron 19 of 21)",9,63163768,63377902,214135,2,Map2k5-201,171075,Map2k5-201,Map2k5,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,34,37,23938,ENSMUSG00000058444,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
594,cg03103218,0.0000767,0.0000135,5.689561642,2.95E-08,gain,yes,0.0000101,0.0000229,0.441535741,0.659133011,pos,ns,-0.001363419,0.006705672,-0.203323182,0.839015832,neg,ns,0.076229844,0.000380654,0.000230608,1.650656135,0.099821514,pos,ns,0.851638342,Macrod1,Macrod1_Intron,19,7143829,7143878,7143829,7143830,50,-,CGGGGGACTTATTTACTGGCAAATCCATACTCATTACAAGACTCAGCCTA,"Intron (Macrod1-201/Macrod1, intron 3 of 10)",19,7056810,7198057,141248,1,Macrod1-201,87019,Macrod1-201,Macrod1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,11,107227,ENSMUSG00000036278,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U4,Pr-F
5052,cg22372258,0.0000075,0.00000435,1.723896253,0.08572354,gain,ns,-0.00000326,0.00000739,-0.441523045,0.659142191,neg,ns,-0.003438946,0.002164466,-1.588819869,0.113120401,neg,ns,0.946459063,-0.0000322,0.0000744,-0.432770795,0.665482217,neg,ns,0.883109153,Gmds,Gmds_Intron,13,32055339,32055388,32055339,32055340,50,+,CGAGCCACACATGTGACAAATTATTTAACTCAGTTGATCCTAATAAGTCA,"Intron (Gmds-201/Gmds, intron 7 of 10)",13,31819579,32338740,519162,2,Gmds-201,283352,Gmds-201,Gmds,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,5,218138,ENSMUSG00000038372,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21630,cg17044186,-0.00000688,0.00000323,-2.131213131,0.033858046,loss,ns,0.00000242,0.00000548,0.44137245,0.659251074,pos,ns,0.00057618,0.001606698,0.358611403,0.720129912,pos,ns,0.142589149,-0.0000204,0.0000553,-0.369192795,0.712236067,neg,ns,0.930909726,Zfhx3,Zfhx3_Intron,8,108673954,108674003,108674002,108674003,50,-,ACTATTAGTAGCTTGTTTTTCTAAGCCCTAAAATTCATTTTCTTTTCCCG,"Intron (Zfhx3-204/Zfhx3, intron 5 of 15)",8,107942644,108961630,1018987,1,Zfhx3-204,731310,Zfhx3-204;Zfhx3-205;Zfhx3-206,Zfhx3;Zfhx3;Zfhx3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,114,177,11906,ENSMUSG00000038872,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5321,cg26680745,0.00000255,0.00000263,0.970270212,0.332668237,gain,ns,-0.00000197,0.00000447,-0.441325539,0.659284992,neg,ns,0.001919945,0.001310235,1.465343647,0.14384067,pos,ns,0.842118303,-0.0000125,0.0000451,-0.277549159,0.781543465,neg,ns,0.953497636,Zfp148,Zfp148_Exon,16,33434653,33434702,33434653,33434654,50,+,CGACAAACTGGAAGGATTGTTTCTTAAATGTGGCGGCATAGACGAAATGC,"Exon (Zfp148-202/Zfp148, exon 4 of 9)",16,33380836,33504363,123528,1,Zfp148-202,53817,Zfp148-202;Zfp148-205;Zfp148-204;Zfp148-201,Zfp148;Zfp148;Zfp148;Zfp148,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,7,22661,ENSMUSG00000022811,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8828,cg10487127,-0.00000581,0.00000201,-2.891513905,0.004104887,loss,ns,0.00000151,0.00000341,0.441174441,0.659394249,pos,ns,0.00147283,0.000999529,1.473524362,0.141624371,pos,ns,0.848862006,-0.0000236,0.0000344,-0.687962772,0.491990666,neg,ns,0.062360963,Atxn1,Atxn1_fiveUTR,13,45964906,45964955,45964954,45964955,50,-,CTCCACGGGGCTTGTTTTGGATCCCCCTGCAGTGAAACAGGTCCTGTACG,Promoter (<=1kb),13,45549755,45964976,415222,2,Atxn1-201,21,Atxn1-201;Atxn1-202;Atxn1-203;Atxn1-204;Atxn1-206,Atxn1;Atxn1;Atxn1;Atxn1;Atxn1,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,10,20238,ENSMUSG00000046876,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
25769,cg09684469,0.00000595,0.0000034,1.748073235,0.081441325,gain,ns,0.00000255,0.00000578,0.441155561,0.659407901,pos,ns,-0.000959054,0.001693488,-0.566318683,0.571586908,neg,ns,0.242917727,0.000135025,0.0000582,2.31847576,0.021073764,pos,ns,0.492089773,Uncx,Uncx_Promoter,5,139537215,139537264,139537263,139537264,50,-,GAATTTTCTGCAACAGCAGATGGTCAGCTAGAAGCAGATAATAGTTAACG,Promoter (6-7kb),5,139543494,139548179,4686,1,Uncx-201,-6279,NA,NA,NA,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,22,88,22255,ENSMUSG00000029546,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
8912,cg24998102,-0.000000842,0.000000658,-1.280157301,0.201446915,loss,ns,-0.000000493,0.00000112,-0.440991455,0.659526573,neg,ns,0.000165281,0.000327364,0.504883255,0.613999551,pos,ns,0.211831946,-0.0000005,0.0000113,-0.044373343,0.964635378,neg,ns,0.024980079,Helt,Helt_Promoter,8,46295340,46295389,46295340,46295341,50,-,CGAATTAACAGCATGTTTTGATCCGGTAAATGTCATTAGAAAGGGAGAAA,Promoter (<=1kb),8,46292039,46294671,2633,2,Helt-201,-718,Helt-201;Helt-202;Helt-203,Helt;Helt;Helt,0;-1351;-2005,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,15,22,234219,ENSMUSG00000047171,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
12984,cg14599908,-8.47E-08,0.00000103,-0.08237715,0.93439997,loss,ns,-0.00000077,0.00000175,-0.440918315,0.659579466,neg,ns,0.001419453,0.000511584,2.774622778,0.005861934,pos,ns,2.231959074,-0.0000545,0.0000176,-3.096329497,0.002138354,neg,ns,0.030911157,Stc1,Stc1_Promoter,14,69029704,69029753,69029704,69029705,50,-,CGAAGAAGCTGGACGCTCTGCTGAGGGTATTTCATTGCATAAGCCTAGCC,Promoter (<=1kb),14,69029238,69041804,12567,1,Stc1-201,466,Stc1-201,Stc1,0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,5,9,20855,ENSMUSG00000014813,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
3457,cg05303585,-0.00000118,0.00000431,-0.272711096,0.785256873,loss,ns,-0.00000323,0.00000733,-0.44085436,0.659625718,neg,ns,-0.001933272,0.002146072,-0.900841921,0.368371679,neg,ns,0.433713767,0.0000277,0.0000738,0.374660483,0.708169153,pos,ns,0.899286735,Bcl11a,Bcl11a_Intron,11,24097225,24097274,24097225,24097226,50,+,CGACTTCACAGCCTTTGGTCTCCGGCCAACTGCATGCATAATTGATTCCA,"Intron (Bcl11a-201/Bcl11a, intron 2 of 4)",11,24078056,24173194,95139,1,Bcl11a-201,19169,Bcl11a-201;Bcl11a-203;Bcl11a-202;Bcl11a-204,Bcl11a;Bcl11a;Bcl11a;Bcl11a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,98,14025,ENSMUSG00000000861,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27283,cg04700328,-0.00000604,0.00000419,-1.442590247,0.150145529,loss,ns,-0.00000314,0.00000712,-0.44083954,0.659636436,neg,ns,0.002317344,0.002084742,1.111573303,0.267182992,pos,ns,0.573191191,-0.0000663,0.0000717,-0.924976623,0.355697534,neg,ns,0.880091966,Tox2,Tox2_Intron,2,163238284,163238333,163238284,163238285,50,+,CGCTTGTCTGTTTGGAATGTGCAATTAGATTTACAATCGGGGATGGGAGA,"Intron (Tox2-202/Tox2, intron 1 of 8)",2,163203125,163324170,121046,1,Tox2-202,35159,Tox2-202;Tox2-203;Tox2-201;Tox2-205,Tox2;Tox2;Tox2;Tox2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,5,269389,ENSMUSG00000074607,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18360,cg24404976,0.0000251,0.00000639,3.932188193,0.000103891,gain,ns,-0.00000479,0.0000109,-0.44076964,0.65968699,neg,ns,0.003861657,0.003180511,1.214162654,0.225609752,pos,ns,0.646642132,0.00027189,0.000109377,2.485794518,0.013452927,pos,ns,0.201492673,Otp,Otp_Promoter,13,94872354,94872403,94872354,94872355,50,-,CGTGTGTGTAACAATCTAAAACCTATTTATTGAGGAAAAATCACTGGATC,Promoter (3-4kb),13,94875602,94885130,9529,1,Otp-201,-3248,Otp-201,Otp,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,27,34,18420,ENSMUSG00000021685,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
20664,cg18563768,-0.000148882,0.000036,-4.140208702,0.0000448,loss,ns,-0.0000269,0.0000611,-0.440705925,0.659733071,neg,ns,0.104057569,0.017897669,5.814029168,1.52E-08,pos,ns,7.819281615,-0.004855312,0.000615499,-7.888411702,5.29E-14,neg,yes,0.409285653,Adamts6,Adamts6_threeUTR,13,104398007,104398056,104398007,104398008,50,+,CGTAAGTAGCTAAAGTAAGCCGGAGCCAACAAAAAGACACAGTTGGAAAT,3' UTR,13,104287835,104496695,208861,1,Adamts6-207,110172,Adamts6-207;Adamts6-202;Adamts6-201;Adamts6-206;Adamts6-203;Adamts6-204,Adamts6;Adamts6;Adamts6;Adamts6;Adamts6;Adamts6,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,19,31,108154,ENSMUSG00000046169,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21809,cg11251514,0.0000543,0.0000117,4.650538298,0.00000491,gain,ns,0.00000874,0.0000198,0.440687104,0.659746684,pos,ns,0.008372719,0.00581145,1.440728003,0.15067078,pos,ns,0.821970963,-0.00016935,0.000199855,-0.847362343,0.397446906,neg,ns,0.203134865,Lmo1,Lmo1_Intergenic_upstream,7,109191370,109191419,109191418,109191419,50,+,GTGCTTCTAAATTACAATCAAACAGTTACCAATTACACAAATTATTGACG,Distal Intergenic,7,109138675,109175207,36533,2,Lmo1-202,-16163,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,34,66,109594,ENSMUSG00000036111,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10012,cg11981519,0.00000157,0.00000414,0.380255053,0.704016502,gain,ns,-0.0000031,0.00000703,-0.440455658,0.659914089,neg,ns,0.007730634,0.002060769,3.751335191,0.000209896,pos,ns,3.677996151,-0.000241355,0.0000709,-3.405616875,0.00074711,neg,ns,0.925213402,Jade2,Jade2_Intron,11,51852936,51852985,51852936,51852937,50,-,CGTGTGTGTAATAAGATGCTAATACAATTTAATGATATTTCGGCTGGAAA,"Intron (Jade2-201/Jade2, intron 1 of 11)",11,51813455,51857653,44199,2,Jade2-201,4668,Jade2-201;Jade2-202;Jade2-203;Jade2-204,Jade2;Jade2;Jade2;Jade2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,6,76901,ENSMUSG00000020387,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24953,cg13235828,-0.00000382,0.00000191,-2.004229949,0.045915013,loss,ns,0.00000143,0.00000324,0.440417591,0.659941624,pos,ns,0.001767585,0.000948994,1.862588357,0.063466002,pos,ns,1.197458858,-0.0000784,0.0000326,-2.403093453,0.01684433,neg,ns,0.945772318,Fgfr2,Fgfr2_Exon,7,130198423,130198472,130198471,130198472,50,-,CAGAACTGTCAACCATGCAGAGTGAAAGGATATCCCAATAGAATTACCCG,"Exon (Fgfr2-207/Fgfr2, exon 6 of 16)",7,130162451,130266263,103813,2,Fgfr2-211,67791,Fgfr2-211;Fgfr2-217;Fgfr2-207;Fgfr2-226;Fgfr2-215;Fgfr2-201;Fgfr2-202;Fgfr2-203;Fgfr2-204;Fgfr2-205;Fgfr2-206;Fgfr2-208;Fgfr2-209;Fgfr2-210;Fgfr2-212;Fgfr2-213;Fgfr2-214;Fgfr2-216;Fgfr2-222;Fgfr2-225;Fgfr2-218,Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,79,14183,ENSMUSG00000030849,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1493,cg09145147,-0.0000105,0.00000639,-1.65090398,0.099770848,loss,ns,0.00000478,0.0000109,0.440304038,0.660023764,pos,ns,0.00036116,0.003180426,0.113557253,0.909662281,pos,ns,0.041119813,-0.000118661,0.000109375,-1.084907243,0.278805723,neg,ns,0.907578301,Gm11819,Gm11819_Intergenic_upstream,4,13248694,13248743,13248694,13248695,50,-,CGTATCCCGTGGATTGAGACGTACCTTGATGAAACTGCATTGTCATGGAA,Distal Intergenic,4,13444770,13445141,372,1,Gm11819-201,-196076,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,19,22,,NA,mapped to different genes,4,13248547,13248714,168,*,168,12,0.535714286,0.997525977,0.071428571,8.86E-08,CpGisland,TRUE,U15,NS
14808,cg15701287,-0.00000755,0.00000262,-2.88673745,0.004166032,loss,ns,-0.00000196,0.00000444,-0.440244541,0.660066804,neg,ns,0.000469423,0.001301689,0.360626172,0.718624527,pos,ns,0.143497964,-0.000154141,0.0000448,-3.443330993,0.000653616,neg,ns,0.949384709,Myo18a,Myo18a_Intron,11,77858719,77858768,77858767,77858768,50,+,ACAATAGTCTAATTTACATGACATTCTCCATGAAGCTATTTTCACTGACG,"Intron (Myo18a-208/Myo18a, intron 41 of 41)",11,77763246,77865980,102735,1,Myo18a-208,95473,Myo18a-208;Myo18a-209;Myo18a-207;Myo18a-201;Myo18a-203;Myo18a-222;Myo18a-223;Myo18a-211;Myo18a-205;Myo18a-210;Myo18a-224;Myo18a-202;Myo18a-220;Myo18a-221;Myo18a-215;Myo18a-216,Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,18,360013,ENSMUSG00000000631,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3115,cg06805674,-0.00000292,0.000013,-0.225001789,0.822126126,loss,ns,-0.0000097,0.000022,-0.440009877,0.66023657,neg,ns,0.005045514,0.006457242,0.781373028,0.435179453,pos,ns,0.361331618,0.000123226,0.000222064,0.554912548,0.579354637,pos,ns,0.37642176,Lrmda,Lrmda_Intron,14,22801145,22801194,22801193,22801194,50,+,CATTAACTGCCTGTTGTACGTAACCTCTCCTTGTCTTACACACAGCTGCG,"Intron (Lrmda-201/Lrmda, intron 5 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,781433,Lrmda-201;Lrmda-204;Lrmda-206,Lrmda;Lrmda;Lrmda,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14659,cg24597392,0.000207626,0.0000158,13.15471844,1.05E-31,gain,yes,0.0000118,0.0000268,0.439900142,0.660315962,pos,ns,0.022644992,0.007855561,2.882670395,0.00421875,pos,ns,2.374816248,-0.000481351,0.000270152,-1.781776108,0.075764574,neg,ns,0.72753335,Rbfox2,Rbfox2_Exon,15,77105609,77105658,77105657,77105658,50,+,GTAATTTCTCCCTGGCCCTGTCTGCATCAGCACTATTCTCGAAAGTTACG,"Exon (Rbfox2-204/Rbfox2, exon 6 of 14)",15,77078990,77306928,227939,2,Rbfox2-204,201270,Rbfox2-204;Rbfox2-203;Rbfox2-202;Rbfox2-206;Rbfox2-208;Rbfox2-209;Rbfox2-201;Rbfox2-207;Rbfox2-212;Rbfox2-213,Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,20,93686,ENSMUSG00000033565,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6757,cg23493585,0.000011,0.00000235,4.685971179,0.00000418,gain,ns,0.00000176,0.000004,0.439889114,0.660323942,pos,ns,0.00291921,0.001171178,2.492541216,0.013205059,pos,ns,1.879259668,-0.0000274,0.0000403,-0.680116999,0.49693797,neg,ns,0.066115883,Lhx2,Lhx2_Intron,2,38347984,38348033,38348032,38348033,50,-,TGACTAATTACACCTTGTCAATCACCGGCTATGAAGACATAAAACCAGCG,"Intron (Lhx2-203/Lhx2, intron 1 of 4)",2,38339281,38369199,29919,1,Lhx2-203,8703,Lhx2-203;Lhx2-204;Lhx2-202;Lhx2-201;Lhx2-207;Lhx2-205,Lhx2;Lhx2;Lhx2;Lhx2;Lhx2;Lhx2,0;0;0;0;-3735;-4499,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,33,16870,ENSMUSG00000000247,mapped to different genes,2,38347822,38348178,357,*,357,27,0.518207283,1.126841244,0.075630252,1.55E-17,CpGisland,TRUE,U3,Pr-B
19621,cg20773292,-0.00000175,0.00000259,-0.676916263,0.49896388,loss,ns,-0.00000193,0.0000044,-0.439773524,0.660407575,neg,ns,0.001977745,0.001287905,1.535629137,0.125649334,pos,ns,0.900839809,-0.0000598,0.0000443,-1.350646525,0.177793781,neg,ns,0.948931155,Dip2b,Dip2b_Exon,15,100151220,100151269,100151268,100151269,50,-,AGAGCTTACAGAATGCTGAGTCCTGGATCAACCGTTCAATTCAGGGATCG,"Exon (Dip2b-202/Dip2b, exon 5 of 38)",15,100038664,100219473,180810,1,Dip2b-202,112556,Dip2b-202;Dip2b-201,Dip2b;Dip2b,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,8,239667,ENSMUSG00000023026,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8062,cg16071226,0.0000698,0.00000586,11.92187065,3.16E-27,gain,yes,0.00000437,0.00000995,0.439684571,0.660471938,pos,ns,0.011972999,0.00291474,4.107741564,0.0000512,pos,ns,4.290917433,-0.000194068,0.000100238,-1.936076951,0.05376713,neg,ns,0.132859997,Pax5,Pax5_Promoter,4,44710740,44710789,44710740,44710741,50,+,CGAAGGCACCGTGAAATGATTAAGGAACTAAAGAGCTTCTCGCCATGTGA,Promoter (<=1kb),4,44524757,44710487,185731,2,Pax5-201,-253,Pax5-201;Pax5-202;Pax5-203;Pax5-204;Pax5-205;Pax5-207;Pax5-206;Pax5-209;Pax5-210;Pax5-212;Pax5-213;Pax5-214;Pax5-215,Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5,0;0;0;0;0;0;0;0;0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,10,45,18507,ENSMUSG00000014030,conserved gene but different region,4,44710639,44710987,349,*,349,27,0.601719198,0.855004083,0.077363897,8.51E-18,CpGisland,TRUE,NA,NRS
6001,cg05338001,0.000021,0.0000107,1.965338036,0.050267658,gain,ns,-0.000008,0.0000182,-0.439681324,0.660474288,neg,ns,0.008712093,0.005329901,1.634569394,0.103154377,pos,ns,0.986512339,-0.000142429,0.000183295,-0.777046839,0.437723671,neg,ns,0.117762021,Cxxc5,Cxxc5_Intron,18,35816271,35816320,35816319,35816320,50,-,GGAACAGCAATCGATGGGGCGGAACAGCCTCCCTGACAGATGGACCCACG,"Intron (Gm50371-201/Gm50371-201, intron 4 of 4)",18,35829397,35859002,29606,1,Cxxc5-202,-13126,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,49,67393,ENSMUSG00000046668,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
27639,cg15938865,-0.00000354,0.00000158,-2.243698656,0.025557526,loss,ns,0.00000118,0.00000268,0.43965156,0.660495825,pos,ns,0.000832981,0.000784892,1.061267705,0.289394356,pos,ns,0.538509943,-0.000067,0.000027,-2.483259216,0.013547135,neg,ns,0.038143745,Stx16,Stx16_fiveUTR,2,174077097,174077146,174077097,174077098,50,-,CGGAATAATTCCATCCAAAACCGGCAGCTGTTAGCCGAGCAAGTGAGTAG,Promoter (<=1kb),2,174076308,174092433,16126,1,Stx16-205,789,Stx16-205;Stx16-203;Stx16-204;Stx16-202;Stx16-201;Stx16-206,Stx16;Stx16;Stx16;Stx16;Stx16;Stx16,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,6,6,228960,ENSMUSG00000027522,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
17759,cg24882301,4.48E-08,0.000000915,0.049019071,0.960935664,gain,ns,-0.000000683,0.00000155,-0.439638991,0.66050492,neg,ns,0.000946774,0.000455306,2.079425045,0.03839997,pos,ns,1.415669112,-0.0000211,0.0000157,-1.349084266,0.178294457,neg,ns,0.973591912,Fto,Fto_Intron,8,91645397,91645446,91645445,91645446,50,+,GGTTGTTGGCAACACGCCCGCTGTTTAAGGTTACTTTCATTAATTAACCG,"Intron (Fto-201/Fto, intron 8 of 8)",8,91313525,91668439,354915,1,Fto-201,331872,Fto-201;Fto-205,Fto;Fto,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,26,26383,ENSMUSG00000055932,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13803,cg19604134,8.73E-08,0.00000271,0.03226791,0.974279165,gain,ns,0.00000202,0.0000046,0.439572784,0.660552827,pos,ns,0.003294037,0.001346407,2.446539095,0.014978777,pos,ns,1.824523635,-0.000149635,0.0000463,-3.231660705,0.001363103,neg,ns,0.938569145,Zzef1,Zzef1_Exon,11,72869843,72869892,72869891,72869892,50,+,TCCACTATTGATCAAGCTGTGAACGCCACCTTTGCTGCTCTGGTGTATCG,"Exon (Zzef1-201/Zzef1, exon 26 of 55)",11,72796226,72927120,130895,1,Zzef1-201,73617,Zzef1-201;Zzef1-207;Zzef1-208,Zzef1;Zzef1;Zzef1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,195018,ENSMUSG00000055670,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5029,cg03032025,-0.000000314,0.0000159,-0.019792298,0.984221795,loss,ns,0.0000118,0.0000269,0.439529414,0.660584211,pos,ns,0.038756229,0.007894537,4.909246367,0.00000148,pos,ns,5.829461278,-0.001450881,0.000271492,-5.34409151,0.000000176,neg,yes,0.247939604,Cpeb4,Cpeb4_Exon,11,31872299,31872348,31872299,31872300,50,+,CGGGTTTGGAGTGCTAGTGCAAAGCAATACTGGGAATAAATCTGCTTTTC,Promoter (<=1kb),11,31872211,31931577,59367,1,Cpeb4-201,88,Cpeb4-201;Cpeb4-202;Cpeb4-203,Cpeb4;Cpeb4;Cpeb4,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,10,67579,ENSMUSG00000020300,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
8070,cg10116181,0.00000582,0.00000935,0.622497637,0.534072311,gain,ns,0.00000698,0.0000159,0.439510171,0.660598136,pos,ns,0.014583531,0.004651752,3.13506176,0.001882758,pos,ns,2.725205565,-0.000265239,0.000159973,-1.658022678,0.098324391,neg,ns,0.784746855,Pax2,Pax2_Intergenic_upstream,19,44717571,44717620,44717619,44717620,50,+,GAGTGATCCGGCAATGCGCTCCTGACCTTGCAGGACAGCTAATCCATCCG,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-38425,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,19,44717536,44717731,196,*,196,11,0.515306122,0.921367521,0.056122449,0.00000383,CpGisland,TRUE,U13,Hc-P
4034,cg05771328,0.0000892,0.0000167,5.341932549,0.000000178,gain,yes,0.0000125,0.0000284,0.439492696,0.660610782,pos,ns,0.045604322,0.008313816,5.485365508,8.58E-08,pos,ns,7.066655623,-0.001728981,0.000285911,-6.047261405,4.23E-09,neg,yes,0.277227764,Gm45647,Gm45647_Intergenic_upstream,8,26594159,26594208,26594159,26594160,50,+,CGCAGGAGACAGGTTTATGGAGAGAGAAATAAAATGTTGACAAATGGCCC,Distal Intergenic,8,26780315,26780509,195,1,Gm45647-201,-186107,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,46,62,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24434,cg05761052,0.0000332,0.0000111,3.001335133,0.002906361,gain,ns,-0.00000825,0.0000188,-0.439444747,0.66064548,neg,ns,0.017792405,0.005502586,3.2334621,0.001354817,pos,ns,2.868119238,-0.000525101,0.000189233,-2.774884728,0.005857331,neg,ns,0.278773028,Lrig3,Lrig3_Intron,10,125970729,125970778,125970729,125970730,50,-,CGTGGTGAGCATGCACAGCAGTGGTTGTAATTGCAGGATTTTTATAGTTT,"Intron (Lrig3-202/Lrig3, intron 1 of 7)",10,125966219,125998013,31795,1,Lrig3-202,4510,Lrig3-203;Lrig3-202;Lrig3-207;Lrig3-201,Lrig3;Lrig3;Lrig3;Lrig3,4561;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,320398,ENSMUSG00000020105,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
11309,cg01508445,-0.0000154,0.00000711,-2.168657697,0.030868801,loss,ns,0.00000531,0.0000121,0.439322986,0.660733596,pos,ns,-0.007209309,0.003540506,-2.036237041,0.04257627,neg,ns,1.370832391,-0.000018,0.000121758,-0.147929945,0.882494227,neg,ns,0.863403785,Gm13532,Gm13532_Intergenic_downstream,2,57528209,57528258,57528209,57528210,50,-,CGCTGGCCACAGTTGGAGACAGGAAACTCACCTACTTCACTGGTAAGGCT,Distal Intergenic,2,57628989,57629228,240,2,Gm13532-201,101019,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,6,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17589,cg17172342,0.000011,0.0000444,0.246468643,0.805482599,gain,ns,-0.0000331,0.0000755,-0.439085529,0.660905452,neg,ns,0.030430183,0.022113715,1.376077372,0.169790941,pos,ns,0.770085486,-0.001696138,0.000760489,-2.23032613,0.026441343,neg,ns,0.737791474,Gm49612,Gm49612_Promoter,16,91140656,91140705,91140656,91140657,50,-,CGAACAGCCGAGGCAGGGCCTGAACAGCACCATTCTGTAATGACATGATG,Promoter (5-6kb),16,91135275,91135476,202,2,Gm49612-201,-5229,NA,NA,NA,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,5,5,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
4387,cg19179483,-0.0000343,0.00000669,-5.119881629,0.000000538,loss,yes,0.00000499,0.0000114,0.439048954,0.660931924,pos,ns,-0.004604855,0.003330531,-1.382618727,0.167776995,neg,ns,0.775267588,-0.0000261,0.000114537,-0.228154132,0.819676836,neg,ns,0.869300613,Opcml,Opcml_Intron,9,28687393,28687442,28687441,28687442,50,+,GTCTCTTCATGTCATTATTAATATGTCTCTTGGATTGGTTCATTACCACG,"Intron (Opcml-202/Opcml, intron 3 of 7)",9,27790947,28925410,1134464,1,Opcml-202,896446,Opcml-202;Opcml-201;Opcml-204,Opcml;Opcml;Opcml,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,12,330908,ENSMUSG00000062257,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3941,cg16862911,0.000000779,0.00000569,0.136736735,0.891327651,gain,ns,-0.00000425,0.00000967,-0.439033811,0.660942885,neg,ns,0.004391403,0.002834012,1.549535689,0.122273262,pos,ns,0.912668502,-0.000217215,0.0000975,-2.228723166,0.026549047,neg,ns,0.880956955,5730522E02Rik,5730522E02Rik_Intron,11,25855427,25855476,25855475,25855476,50,-,TTAAAGTTTAAGTGCAGCCTCAGGCACTCATAAGCATTTATTACAAATCG,"Intron (5730522E02Rik-202/5730522E02Rik, intron 2 of 5)",11,25617668,26210569,592902,2,5730522E02Rik-202,355093,5730522E02Rik-202;5730522E02Rik-201;5730522E02Rik-204,5730522E02Rik;5730522E02Rik;5730522E02Rik,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,90,70626,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12670,cg25661234,-0.0000104,0.00000464,-2.249373119,0.02519032,loss,ns,-0.00000346,0.00000789,-0.438992552,0.660972748,neg,ns,-0.00196834,0.0023113,-0.85161591,0.395084688,neg,ns,0.403309802,-0.0000167,0.0000795,-0.209848287,0.833923931,neg,ns,0.968075483,Unc80,Unc80_Exon,1,66521554,66521603,66521554,66521555,50,+,CGAGGGCTCTCTGGAGATCGTCTGAGACACCAGGTATTCCGAGAGAATGT,"Exon (Unc80-201/Unc80, exon 14 of 65)",1,66468367,66699148,230782,1,Unc80-201,53187,Unc80-201;Unc80-206,Unc80;Unc80,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,9,329178,ENSMUSG00000055567,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21787,cg22223787,-0.0000437,0.00000856,-5.110128054,0.000000564,loss,yes,-0.00000638,0.0000145,-0.438951153,0.661002713,neg,ns,-0.009223633,0.004260031,-2.165156631,0.031138302,neg,ns,1.50670508,-0.000101282,0.000146502,-0.691333189,0.489873567,neg,ns,0.729447096,Lmo1,Lmo1_Intron,7,109161656,109161705,109161704,109161705,50,+,TAAGGCCTGCGTTGGTTGAGTCATAAGTTATCAGCACCCAGTGAGGGCCG,"Intron (Lmo1-201/Lmo1, intron 1 of 3)",7,109138572,109170519,31948,2,Lmo1-201,8814,Lmo1-201;Lmo1-202;Lmo1-203,Lmo1;Lmo1;Lmo1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,66,109594,ENSMUSG00000036111,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12687,cg17835200,-0.000000652,0.00000563,-0.115691814,0.907971699,loss,ns,0.0000042,0.00000957,0.438912617,0.661030606,pos,ns,-0.0023893,0.002803025,-0.852400521,0.394649888,neg,ns,0.403788016,0.0000326,0.0000964,0.338639513,0.735110563,pos,ns,0.827224445,Slitrk2,Slitrk2_Exon,X,66655135,66655184,66655183,66655184,50,-,AGGATTGCAGTCATTCAGGAAGGTGCCTTTACAAACCTGACCAGTTTACG,"Exon (Slitrk2-202/Slitrk2, exon 3 of 3)",20,66649318,66661393,12076,1,Slitrk2-202,5817,Slitrk2-202;Slitrk2-201,Slitrk2;Slitrk2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,245450,ENSMUSG00000036790,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11509,cg08876385,-0.0000481,0.00000834,-5.769410071,1.93E-08,loss,yes,-0.00000622,0.0000142,-0.438903587,0.661037142,neg,ns,-0.004149968,0.004153147,-0.999234539,0.318460412,neg,ns,0.496944547,-0.000219931,0.000142826,-1.539847774,0.124617557,neg,ns,0.6863306,Nptn,Nptn_Intron,9,58623454,58623503,58623454,58623455,50,-,CGTCTAGGCCAACTGGTCTTCAGGCTGTTGTCTGCGCTAGTGGTCATTTG,"Intron (Nptn-212/Nptn, intron 2 of 7)",9,58582240,58651318,69079,1,Nptn-212,41214,Nptn-212;Nptn-201;Nptn-213;Nptn-206;Nptn-203;Nptn-202;Nptn-211;Nptn-207;Nptn-204,Nptn;Nptn;Nptn;Nptn;Nptn;Nptn;Nptn;Nptn;Nptn,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,22,20320,ENSMUSG00000032336,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12073,cg12477602,-0.0000037,0.00000112,-3.304176003,0.001064149,loss,ns,0.000000836,0.0000019,0.438852617,0.661074036,pos,ns,-0.0000526,0.000558055,-0.094204589,0.925007499,neg,ns,0.033854747,-0.0000144,0.0000192,-0.751632589,0.452842291,neg,ns,0.036658028,Ints6,Ints6_fiveUTR,14,62760620,62760669,62760668,62760669,50,+,AGAGGCAGACGTGTCTATCAGGAACAGTAAGATGGGCATAGTGCTGGCCG,Promoter (<=1kb),14,62676330,62761112,84783,2,Ints6-201,443,Ints6-201;Ints6-202;Ints6-206;Ints6-205;Ints6-204,Ints6;Ints6;Ints6;Ints6;Ints6,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,6,18130,ENSMUSG00000035161,mapped to different genes,14,62760409,62760968,560,*,560,60,0.725,0.81543502,0.107142857,1.08E-47,CpGisland,TRUE,U1,Pr-A
2978,cg18573296,-0.000000507,0.00000114,-0.443999562,0.657352664,loss,ns,0.000000852,0.00000194,0.43883543,0.661086477,pos,ns,-0.001689784,0.00056848,-2.972460127,0.003185697,neg,ns,2.496795511,0.0000646,0.0000195,3.303751408,0.001065706,pos,ns,0.973855305,Lrmda,Lrmda_Intron,14,22241022,22241071,22241022,22241023,50,+,CGATGGAGTCGTATGATGCCCTTGCCTTGTTTTATATTGGCTGTCAGCGC,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,221310,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206,Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6951,cg19880080,-0.0000256,0.00000408,-6.267402521,1.23E-09,loss,yes,-0.00000304,0.00000694,-0.438832274,0.661088762,neg,ns,-0.004315814,0.002032165,-2.12375155,0.034482549,neg,ns,1.462400635,0.000172108,0.0000699,2.462692785,0.01433325,pos,ns,0.930841763,Map4k4,Map4k4_Exon,1,40011668,40011717,40011668,40011669,50,-,CGTGCCAGCCATCATGAGAGCAATGGCTTTGCCGGTCGCATTCACCTCTT,"Exon (Map4k4-213/Map4k4, exon 22 of 31)",1,39900913,40026310,125398,1,Map4k4-201,110755,Map4k4-201;Map4k4-202;Map4k4-213;Map4k4-218;Map4k4-215;Map4k4-217;Map4k4-209;Map4k4-208;Map4k4-205;Map4k4-207;Map4k4-210,Map4k4;Map4k4;Map4k4;Map4k4;Map4k4;Map4k4;Map4k4;Map4k4;Map4k4;Map4k4;Map4k4,0;0;0;0;0;0;0;0;0;4275;-2135,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,12,26921,ENSMUSG00000026074,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27549,cg19466923,-0.00000345,0.00000385,-0.897216654,0.370299571,loss,ns,-0.00000287,0.00000654,-0.438787502,0.66112117,neg,ns,0.0000165,0.001916269,0.008608074,0.993137372,pos,ns,0.002990675,-0.0000824,0.0000659,-1.249663317,0.212365207,neg,ns,0.915406167,Tshz2,Tshz2_Intron,2,169811747,169811796,169811747,169811748,50,+,CGTATGTGAATTTTATTTTGTACAGCACATTTGCTTTATGGCTACAATTA,"Intron (Tshz2-202/Tshz2, intron 1 of 2)",2,169633013,169913093,280081,1,Tshz2-202,178734,Tshz2-202;Tshz2-201,Tshz2;Tshz2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,21,30,228911,ENSMUSG00000047907,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10632,cg10939790,0.0000175,0.00000542,3.222690412,0.001405067,gain,ns,-0.00000404,0.00000921,-0.438777701,0.661128265,neg,ns,0.004160939,0.002696874,1.542874616,0.123881364,pos,ns,0.906994021,-0.000151437,0.0000927,-1.632824111,0.103521251,neg,ns,0.144365148,Dnaja4,Dnaja4_Exon,9,54699796,54699845,54699844,54699845,50,+,AGAAGGCCTATCGGAAGCTGGCGCTCAAGTACCACCCGGACAAGAACCCG,Promoter (<=1kb),9,54698873,54714761,15889,1,Dnaja4-202,923,Dnaja4-202;Dnaja4-203;Dnaja4-201,Dnaja4;Dnaja4;Dnaja4,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,4,58233,ENSMUSG00000032285,conserved gene and region,9,54699776,54700105,330,*,330,31,0.675757576,0.835102041,0.093939394,5.26E-23,CpGisland,TRUE,NA,NRS
25811,cg10125423,0.00000745,0.000003,2.48082139,0.013638273,gain,ns,0.00000224,0.0000051,0.438765052,0.661137421,pos,ns,0.002566545,0.001494826,1.716952543,0.086986655,pos,ns,1.060547369,-0.0000452,0.0000514,-0.879936204,0.379575488,neg,ns,0.068813679,Uncx,Uncx_Intergenic_downstream,5,139550585,139550634,139550633,139550634,50,+,CTGATCATCATACATTCATTTTCCCATTTGATAAATCTGCTATCTAGACG,Distal Intergenic,5,139543898,139545268,1371,1,Uncx-202,6687,Uncx-201,Uncx,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,59,88,22255,ENSMUSG00000029546,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
17145,cg12015981,0.00000146,0.00000327,0.447174362,0.655061444,gain,ns,-0.00000243,0.00000555,-0.43854177,0.661299058,neg,ns,0.00281653,0.001625177,1.733061015,0.084079243,pos,ns,1.075311207,-0.000159809,0.0000559,-2.85936073,0.004532795,neg,ns,0.936202371,Cyld,Cyld_Intergenic_downstream,8,88758456,88758505,88758504,88758505,50,+,TAACTGTATAATTTATAATAATTGATTTCATTTTGACTGACCACCAGTCG,Distal Intergenic,8,88735111,88738206,3096,1,Cyld-211,23345,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,74256,ENSMUSG00000036712,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16024,cg12348962,-0.0000348,0.0000127,-2.747982313,0.006347523,loss,ns,0.00000942,0.0000215,0.438509789,0.66132221,pos,ns,-0.010568249,0.00629606,-1.678549503,0.09424757,neg,ns,1.025729838,-0.000127722,0.000216521,-0.589884089,0.555698063,neg,ns,0.708631915,Epha5,Epha5_Exon,5,84233852,84233901,84233900,84233901,50,+,ATCCATTCCAGAAAGACACTAGTTTCATTAACATTTGAGATGGCATTCCG,"Exon (Epha5-205/Epha5, exon 5 of 18)",5,84054761,84416921,362161,2,Epha5-201,183020,Epha5-201;Epha5-205;Epha5-206;Epha5-202;Epha5-203;Epha5-204;Epha5-209;Epha5-208;Epha5-210,Epha5;Epha5;Epha5;Epha5;Epha5;Epha5;Epha5;Epha5;Epha5,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,9,13839,ENSMUSG00000029245,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23083,cg15536715,0.000034,0.00000829,4.094472873,0.000054,gain,ns,-0.00000618,0.0000141,-0.438475887,0.661346754,neg,ns,0.021169699,0.004127383,5.129085005,0.000000514,pos,ns,6.288959847,-0.000470517,0.00014194,-3.314893616,0.00102553,neg,ns,0.581489979,Rnf220,Rnf220_Intron,4,117281339,117281388,117281387,117281388,50,+,AGGGAGTTGGCGTGTGTCAAACGCACTTAGCCACTTTCCGGGCCTCCTCG,"Intron (Rnf220-201/Rnf220, intron 8 of 14)",4,117271463,117497052,225590,2,Rnf220-201,215664,Rnf220-201;Rnf220-203;Rnf220-212;Rnf220-202;Rnf220-205;Rnf220-209;Rnf220-213;Rnf220-210;Rnf220-206;Rnf220-208,Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,4,117281349,117281438,90,*,90,8,0.555555556,1.18226601,0.088888889,0.00000534,CpGisland,TRUE,NA,NRS
25514,cg01885247,-0.00000848,0.00000278,-3.053985819,0.0024541,loss,ns,-0.00000207,0.00000472,-0.438428953,0.661380733,neg,ns,0.000423112,0.00138269,0.306006208,0.759805319,pos,ns,0.11929767,-0.0000483,0.0000476,-1.016423527,0.310220362,neg,ns,0.065925871,Zbtb40,Zbtb40_fiveUTR,4,137048638,137048687,137048686,137048687,50,+,ATGGTTACCTGTTCAGCACCGATTCAAACTGCCGTTCTTTATTGACAGCG,Promoter (<=1kb),4,136979732,137048695,68964,2,Zbtb40-201,8,Zbtb40-201;Zbtb40-202,Zbtb40;Zbtb40,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,3,230848,ENSMUSG00000060862,conserved gene and region,4,137048342,137048880,539,*,539,57,0.6716141,0.937791887,0.105751392,5.55E-45,CpGisland,TRUE,U2,Pr-W
18183,cg13830021,0.0000437,0.00000821,5.326685718,0.000000193,gain,yes,-0.00000612,0.000014,-0.438365883,0.661426395,neg,ns,0.003170997,0.004087526,0.775774059,0.438473823,pos,ns,0.358056329,-0.0000915,0.00014057,-0.651024397,0.515513006,neg,ns,0.218748289,Cacna1g,Cacna1g_Exon,11,94413141,94413190,94413189,94413190,50,+,GTCATCCGTCAGAGCTAGAGAGCAGGACGGTTCAGACACAATCTCTGACG,"Exon (Cacna1g-207/Cacna1g, exon 35 of 38)",11,94408391,94474100,65710,2,Cacna1g-202,60910,Cacna1g-202;Cacna1g-203;Cacna1g-205;Cacna1g-206;Cacna1g-207;Cacna1g-208;Cacna1g-209;Cacna1g-210;Cacna1g-211;Cacna1g-201;Cacna1g-204;Cacna1g-213;Cacna1g-215,Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g,0;0;0;0;0;0;0;0;0;0;0;-1462;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,18,12291,ENSMUSG00000020866,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
27329,cg03682073,-0.00000683,0.00000403,-1.692576754,0.091540773,loss,ns,0.000003,0.00000685,0.438355501,0.661433912,pos,ns,-0.000569697,0.002008182,-0.283687805,0.776839012,neg,ns,0.109668973,0.000122354,0.0000691,1.771681187,0.077429829,pos,ns,0.933383805,Slc12a5,Slc12a5_Exon,2,164996470,164996519,164996518,164996519,50,+,CCAGTCCTGTCTCCTCTGAGGGCATCAAGGACTTCTTCAGCATGAAGCCG,"Exon (Slc12a5-209/Slc12a5, exon 23 of 26)",2,164960824,164997569,36746,1,Slc12a5-209,35646,Ncoa5-201;Ncoa5-202;Ncoa5-203;Slc12a5-209;Slc12a5-207;Slc12a5-201;Slc12a5-208;Slc12a5-205,Ncoa5;Ncoa5;Ncoa5;Slc12a5;Slc12a5;Slc12a5;Slc12a5;Slc12a5,0;0;0;0;0;0;0;-72,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,9,57138,ENSMUSG00000017740,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
71,cg10455019,-0.00000815,0.00000173,-4.700945161,0.0000039,loss,ns,0.00000129,0.00000295,0.438332904,0.661450272,pos,ns,0.000912851,0.000863174,1.057550805,0.291083674,pos,ns,0.535982152,-0.000082,0.0000297,-2.762133196,0.006085236,neg,ns,0.964858308,Plag1,Plag1_threeUTR,4,3905567,3905616,3905615,3905616,50,-,TTGTCACACAGTTGGCAAGGAAAGTTTTTTCTTGGTTTGGTTTCACCACG,3' UTR,4,3900996,3938382,37387,2,Plag1-201,32766,Plag1-201;Plag1-202;Plag1-204,Plag1;Plag1;Plag1,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,22,56711,ENSMUSG00000003282,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7967,cg26845017,0.0000201,0.00000337,5.963705965,6.72E-09,gain,yes,0.00000251,0.00000572,0.438331267,0.661451458,pos,ns,0.00539828,0.001677182,3.218660783,0.001424305,pos,ns,2.846396925,-0.000136155,0.0000577,-2.360597732,0.018864395,neg,ns,0.011933785,Pax2,Pax2_Intergenic_upstream,19,44671118,44671167,44671166,44671167,50,+,CATCAAAAAACTTCTATTAGTAATGGAGACCTCGCCGGAGACCTTCCGCG,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-84878,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,19,44671150,44671210,61,*,61,7,0.62295082,1.196078431,0.114754098,0.00000522,CpGisland,TRUE,U13,Hc-P
15328,cg00891226,-0.00000538,0.00000274,-1.962548702,0.05059276,loss,ns,-0.00000204,0.00000465,-0.438297619,0.661475819,neg,ns,0.001043728,0.001363741,0.765341426,0.444650539,pos,ns,0.351981177,-0.0000291,0.0000469,-0.620995809,0.535058703,neg,ns,0.938652241,Man2a2,Man2a2_Exon,7,80366999,80367048,80366999,80367000,50,-,CGTCATAGCTGTAGAAGGGCATCATGTGACAGAAGATGTCTGTGCTGGAG,"Exon (Man2a2-201/Man2a2, exon 9 of 24)",7,80349097,80371375,22279,2,Man2a2-201,4327,Man2a2-202;Man2a2-201;Man2a2-206;Man2a2-205;Man2a2-208;Man2a2-204;Man2a2-210;Man2a2-207;Man2a2-203,Man2a2;Man2a2;Man2a2;Man2a2;Man2a2;Man2a2;Man2a2;Man2a2;Man2a2,-3537;0;-3327;-3499;0;0;-3339;3810;4034,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,140481,ENSMUSG00000038886,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6911,cg06094880,0.000000241,0.00000758,0.031820067,0.974636021,gain,ns,-0.00000564,0.0000129,-0.438262447,0.661501285,neg,ns,-0.003183549,0.003772714,-0.843835362,0.399412088,neg,ns,0.398578795,-0.00024491,0.000129743,-1.887646717,0.060007284,neg,ns,0.871573349,Fyn,Fyn_Exon,10,39529501,39529550,39529501,39529502,50,-,CGATCTGTCTGTCAAAACCAAAGATGTCTGGGAAATCCCTCGAGAATCCC,"Exon (Fyn-202/Fyn, exon 9 of 14)",10,39369764,39565381,195618,1,Fyn-201,159737,Fyn-201;Fyn-202;Fyn-204;Fyn-205;Fyn-207;Fyn-206;Fyn-203,Fyn;Fyn;Fyn;Fyn;Fyn;Fyn;Fyn,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,6,14360,ENSMUSG00000019843,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16195,cg20026123,-0.00001,0.00000441,-2.267951346,0.024020005,loss,ns,-0.00000329,0.0000075,-0.438149323,0.661583192,neg,ns,-0.004702736,0.002196923,-2.1406008,0.033086161,neg,ns,1.480353619,0.00000721,0.0000756,0.095368775,0.924083534,pos,ns,0.928087436,Lhx1,Lhx1_Intergenic_upstream,11,84579071,84579120,84579071,84579072,50,+,CGCCTGATTACCCCCCAATACCCAAGTTACCATTGATACAGTGGTGCCGG,Distal Intergenic,11,84518284,84525535,7252,2,Lhx1-201,-53536,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,20,23,16869,ENSMUSG00000018698,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8990,cg27132917,-0.00000437,0.00000208,-2.104703166,0.036121833,loss,ns,0.00000154,0.00000353,0.437976215,0.66170854,pos,ns,0.00124586,0.00103308,1.205967047,0.228749809,pos,ns,0.64063926,-0.0000149,0.0000355,-0.418684157,0.6757369,neg,ns,0.054974535,Trim8,Trim8_fiveUTR,19,46501731,46501780,46501779,46501780,50,-,TGGTGTCTCTGGCCGGGGACTGGAATTTCATCTGAATGACTGCCCCTGCG,Promoter (<=1kb),19,46501702,46516848,15147,1,Trim8-201,29,Trim8-201,Trim8,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,21,93679,ENSMUSG00000025034,conserved gene and region,19,46501691,46502449,759,*,759,94,0.748353096,0.884615385,0.123847167,4.99E-81,CpGisland,TRUE,U1,Pr-A
18364,cg18809102,0.0000228,0.0000027,8.46218355,1.06E-15,gain,yes,0.00000201,0.00000458,0.437930588,0.66174158,pos,ns,0.00430059,0.001342371,3.203728181,0.001497743,pos,ns,2.824562732,-0.0000419,0.0000462,-0.908315629,0.364417067,neg,ns,0.066567648,Otp,Otp_Promoter,13,94872546,94872595,94872594,94872595,50,-,TATCAACAGCAATGGGCCTGACCGGCACTTTCCCGGCTGCCCCAGGAACG,Promoter (3-4kb),13,94875602,94885130,9529,1,Otp-201,-3056,Otp-201,Otp,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,27,34,18420,ENSMUSG00000021685,conserved gene and region,13,94872568,94872819,252,*,252,16,0.626984127,0.654545455,0.063492064,1.84E-09,CpGisland,TRUE,U13,Hc-P
18606,cg21242356,0.0000399,0.00000597,6.674270113,1.15E-10,gain,yes,-0.00000444,0.0000101,-0.437830783,0.661813855,neg,ns,0.006750168,0.002973085,2.270425153,0.023867801,pos,ns,1.622187589,-0.000146647,0.000102244,-1.434285871,0.15249866,neg,ns,0.521588073,Hoxb5,Hoxb5_Intergenic_downstream,11,96307006,96307055,96307006,96307007,50,+,CGTGAGGTCCATAAAGTTAGTTTTATGGTTTTGGGGAGTTGACACCGCGC,Distal Intergenic,11,96303512,96306120,2609,1,Hoxb5-201,3494,Hoxb5-202;Hoxb5-201,Hoxb5;Hoxb5,0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,34,15413,ENSMUSG00000038700,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
20225,cg14956645,-0.00000761,0.0000055,-1.3822428,0.167892245,loss,ns,-0.00000409,0.00000935,-0.437685935,0.661918753,neg,ns,-0.006748834,0.002738635,-2.464305807,0.014270166,neg,ns,1.845570984,0.00014106,0.0000942,1.497752648,0.135215043,pos,ns,0.087499282,Hoxc11,Hoxc11_Promoter,15,102955346,102955395,102955394,102955395,50,-,ATTCAAAGGATTTTATTATAACCTACAAAGCCCTCTCTCCCAACGACTCG,Promoter (<=1kb),15,102954427,102957708,3282,1,Hoxc11-201,919,Hoxc11-201,Hoxc11,0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,12,24,109663,ENSMUSG00000001656,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
12940,cg05531564,-0.00000146,0.00000325,-0.450096537,0.652955421,loss,ns,-0.00000242,0.00000552,-0.437682904,0.661920948,neg,ns,-0.001783331,0.001617204,-1.10272512,0.271001886,neg,ns,0.567027687,-0.0000152,0.0000556,-0.273647494,0.784537763,neg,ns,0.947440066,Gm44887,Gm44887_Intergenic_downstream,7,68544251,68544300,68544299,68544300,50,+,TTCCCTATTCATACAAGATAGATTCATCATCCCAATTTGTCAAGCTGGCG,Distal Intergenic,7,68598677,68598854,178,2,Gm44887-201,54554,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,4,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24017,cg06423975,-0.00000203,0.000000778,-2.612979133,0.009413241,loss,ns,-0.000000578,0.00000132,-0.437630889,0.661958619,neg,ns,-0.000587373,0.000387119,-1.517294344,0.130211471,neg,ns,0.885350755,-0.00000903,0.0000133,-0.678030712,0.498257988,neg,ns,0.010117184,Banp,Banp_fiveUTR,8,121950586,121950635,121950586,121950587,50,-,CGAGGACGGACGCCATTATCGCATCTCCCCGACAAACACCACGAGAATTC,Promoter (<=1kb),8,121950596,121991560,40965,1,Banp-215,0,Banp-207;Banp-202;Banp-204;Banp-208;Banp-201;Banp-216;Banp-215;Banp-205;Galnt2l-201,Banp;Banp;Banp;Banp;Banp;Banp;Banp;Banp;Galnt2l,0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,4,53325,ENSMUSG00000025316,conserved gene and region,8,121950349,121951234,886,*,886,132,0.75959368,1.035981929,0.148984199,3.99E-126,CpGisland,TRUE,U1,Pr-A
18863,cg21596965,0.0000126,0.00000238,5.307096802,0.000000213,gain,yes,-0.00000177,0.00000405,-0.437589478,0.66198861,neg,ns,0.003945051,0.001185237,3.328490494,0.000978411,pos,ns,3.009478731,-0.000116861,0.0000408,-2.867024318,0.004427272,neg,ns,0.036477139,E130114P18Rik,E130114P18Rik_Intron,4,97775232,97775281,97775280,97775281,50,+,TTTGGTGCTGAACTTGGATCCAGCCCTTGCCTAGAGGGCGCAAACAATCG,"Intron (Nfia-208/Nfia, intron 1 of 3)",4,97568133,97778048,209916,2,E130114P18Rik-204,2767,E130114P18Rik-204;E130114P18Rik-205;Nfia-208;Nfia-202;Nfia-203;Nfia-205;Nfia-201;Nfia-204,E130114P18Rik;E130114P18Rik;Nfia;Nfia;Nfia;Nfia;Nfia;Nfia,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,24,319865,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
7109,cg23127199,-0.00000133,0.000000808,-1.641303459,0.101748545,loss,ns,0.000000601,0.00000137,0.437567609,0.662004449,pos,ns,0.000149245,0.000402236,0.371037241,0.710863226,pos,ns,0.148213952,0.0000101,0.0000138,0.730151733,0.465848843,pos,ns,0.974999189,Nfx1,Nfx1_Exon,4,41015206,41015255,41015206,41015207,50,-,CGGAGCAACATCCCCTGTCACCTGGTTGATATCTCTTGCGGATTACCCTG,"Exon (Nfx1-203/Nfx1, exon 16 of 24)",4,40970906,41025993,55088,1,Nfx1-203,44300,Nfx1-202;Nfx1-201;Nfx1-203;Nfx1-207;Nfx1-204,Nfx1;Nfx1;Nfx1;Nfx1;Nfx1,44300;44300;0;12696;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,74164,ENSMUSG00000028423,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18098,cg19439984,0.0000353,0.0000119,2.961811037,0.003294776,gain,ns,0.00000886,0.0000202,0.437562811,0.662007924,pos,ns,0.007128901,0.005928836,1.202411572,0.23012173,pos,ns,0.638042369,0.0000912,0.000203892,0.447395274,0.654902135,pos,ns,0.196112912,Gnao1,Gnao1_Exon,8,93812835,93812884,93812835,93812836,50,-,CGCTTTGCTGTGACACCTTCGTGCACACACAGCTCCTAATTAGGGGTTGC,"Exon (4930488L21Rik-202/4930488L21Rik-202, exon 1 of 3)",8,93809966,93950403,140438,1,Gnao1-206,2869,Gnao1-206;Gnao1-202;Gnao1-201;Gnao1-203;Gnao1-207,Gnao1;Gnao1;Gnao1;Gnao1;Gnao1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,13,14681,ENSMUSG00000031748,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
379,cg10420083,-0.0000169,0.00000356,-4.733997308,0.00000335,loss,ns,-0.00000264,0.00000605,-0.437194719,0.662274539,neg,ns,-0.001574403,0.00177216,-0.888409292,0.375009437,neg,ns,0.425957803,-0.000139165,0.0000609,-2.283474028,0.023078787,neg,ns,0.95071629,Klhl29,Klhl29_Intron,12,5276241,5276290,5276241,5276242,50,+,CGAGAGATAGCAGTAGTATATTTAATATCTGGCTTTGTTTAATGATTCTA,"Intron (Klhl29-201/Klhl29, intron 2 of 13)",12,5077472,5375682,298211,2,Klhl29-201,99392,Klhl29-201;Klhl29-202,Klhl29;Klhl29,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,23,208439,ENSMUSG00000020627,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26405,cg23449725,0.0000305,0.00000608,5.013292939,0.000000902,gain,yes,0.00000452,0.0000103,0.437165641,0.662295602,pos,ns,0.006766286,0.00302819,2.234432359,0.026167173,pos,ns,1.582243196,-0.0000804,0.000104139,-0.771760801,0.440844016,neg,ns,0.072656665,Gsx1,Gsx1_Intergenic_downstream,5,147223793,147223842,147223793,147223794,50,-,CGCGCAGAAGCTCTTTGCGCACAGACATCTCTCCAAGGTGACCCATTTGG,Distal Intergenic,5,147188696,147190947,2252,1,Gsx1-201,35146,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,12,20,14842,ENSMUSG00000053129,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
21647,cg25821783.2,-0.0000163,0.00000735,-2.216578979,0.027377461,loss,ns,0.00000546,0.0000125,0.437161316,0.662298736,pos,ns,0.011061753,0.003659101,3.023079263,0.002711038,pos,ns,2.566864417,-0.000424752,0.000125836,-3.37543468,0.00083077,neg,ns,0.135365353,Cep112,Cep112_Exon,11,108752475,108752524,108752475,108752476,50,-,CGGTGCAGCTGGCAGGCATCCCAGCTGCCTGGTGATAGGCATGTGGAAGA,"Exon (Cep112-207/Cep112, exon 1 of 5)",11,108425192,108860615,435424,1,Cep112-213,327283,Cep112-213;Cep112-201;Cep112-206;Cep112-216;Cep112-208;Cep112-211;Cep112-205;Cep112-217;Cep112-203;Cep112-202;Cep112-204;Cep112-214;Cep112-207,Cep112;Cep112;Cep112;Cep112;Cep112;Cep112;Cep112;Cep112;Cep112;Cep112;Cep112;Cep112;Cep112,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,9,76380,ENSMUSG00000020728,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6870,cg11339701,-0.0000613,0.0000124,-4.933097083,0.00000132,loss,yes,0.00000923,0.0000211,0.437142996,0.662312006,pos,ns,-0.010438687,0.006188357,-1.686826739,0.092642645,neg,ns,1.033189053,-0.000302038,0.000212817,-1.419236082,0.156834899,neg,ns,0.832510199,Gm42857,Gm42857_Intergenic_upstream,5,39083104,39083153,39083152,39083153,50,+,AAAGACTTTTTGTTTTACCTCATCCTCTTGTTTTATGATGAATTTGTGCG,Distal Intergenic,5,39002693,39003031,339,2,Gm42857-201,-80073,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27802,cg27581159,0.0000933,0.000012,7.758375267,1.25E-13,gain,yes,-0.00000893,0.0000204,-0.437114558,0.662332607,neg,ns,0.012566763,0.005985044,2.099694236,0.036563823,pos,ns,1.436948401,-0.000429985,0.000205825,-2.089077529,0.037515973,neg,ns,0.059813451,Esrrg,Esrrg_Intron,1,187651827,187651876,187651875,187651876,50,-,AGAAAACAGACAGGCATCATGACGTCCTGGGTCACAGGGAGTGCGGACCG,"Intron (Esrrg-204/Esrrg, intron 2 of 3)",1,187608791,188043502,434712,1,Esrrg-204,43036,Esrrg-204;Esrrg-203;Esrrg-205,Esrrg;Esrrg;Esrrg,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,60,26381,ENSMUSG00000026610,conserved gene and region,1,187651849,187652122,274,*,274,39,0.791970803,0.908210097,0.142335766,1.22E-36,CpGisland,TRUE,U2,Pr-W
16759,cg02262082,0.000000595,0.00000151,0.394690026,0.693343073,gain,ns,-0.00000112,0.00000256,-0.43709048,0.662350049,neg,ns,0.00042522,0.000749823,0.56709419,0.57106059,pos,ns,0.243317811,-0.0000242,0.0000258,-0.938176258,0.3488842,neg,ns,0.966076055,Tia1,Tia1_threeUTR,6,86425150,86425199,86425150,86425151,50,-,CGGAGACTTATTGCAGAAATAGATGAGAAGCAAATCAAGACTACTATTCA,3' UTR,6,86404219,86431201,26983,1,Tia1-203,20931,Gm44790-201;Tia1-203;Tia1-202;Tia1-218;Tia1-212;Tia1-201;Tia1-211;Tia1-221;Tia1-223;Tia1-205;Tia1-206;Tia1-204;Tia1-213;Tia1-217;Tia1-209;Tia1-226;Tia1-207;Tia1-210;Tia1-225;Tia1-228;Tia1-220;Tia1-208,Gm44790;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1,-1459;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;-277,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,TRUE,FALSE,threeUTR,5,7,21841,ENSMUSG00000071337,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11934,cg22248420,-0.0000502,0.0000073,-6.869929921,3.53E-11,loss,yes,0.00000542,0.0000124,0.43685862,0.662518019,pos,ns,-0.009264448,0.003635463,-2.548354272,0.011305312,neg,ns,1.946717458,0.000233194,0.000125023,1.865201218,0.063097797,pos,ns,0.894177979,Gm47241,Gm47241_Intergenic_upstream,9,61714479,61714528,61714527,61714528,50,+,CTTCAATATTTTCACAGGCTACTGCACGGAAAAGGTGTTGCAGGCCTCCG,Distal Intergenic,9,61763084,61763442,359,1,Gm47241-201,-48556,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,6,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3488,cg06282210,-0.0000152,0.00000841,-1.813378541,0.070740387,loss,ns,0.00000624,0.0000143,0.436771606,0.66258106,pos,ns,-0.006281204,0.004183937,-1.50126622,0.134304564,neg,ns,0.871909229,-0.000112361,0.000143885,-0.780907523,0.435452803,neg,ns,0.883889591,Bcl11a,Bcl11a_Exon,11,24164823,24164872,24164823,24164824,50,+,CGCCCCATATTAGTGGTCCGGGCCCGGGCAGGCCCAGCTCAAAAGAGGGC,"Exon (Bcl11a-201/Bcl11a, exon 4 of 5)",11,24078056,24173194,95139,1,Bcl11a-201,86767,Bcl11a-201;Bcl11a-203;Bcl11a-202;Bcl11a-204;Bcl11a-206,Bcl11a;Bcl11a;Bcl11a;Bcl11a;Bcl11a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,51,98,14025,ENSMUSG00000000861,conserved gene but different region,11,24164541,24164882,342,*,342,25,0.628654971,0.74025974,0.073099415,6.44E-16,CpGisland,TRUE,NA,NRS
26202,cg15881760,-0.0000176,0.0000061,-2.88143669,0.004234861,loss,ns,-0.00000453,0.0000104,-0.43674385,0.66260117,neg,ns,-0.007655301,0.003037097,-2.520597882,0.012217254,neg,ns,1.9130264,-0.0000726,0.000104446,-0.695541277,0.487237221,neg,ns,0.911632153,Sox5,Sox5_Intron,6,144368011,144368060,144368059,144368060,50,+,ATAGCTCGCTTCTTCTAAGCACCAATAAATTTACATGATCATAACAGTCG,"Intron (Sox5-209/Sox5, intron 4 of 13)",6,143843739,144781977,938239,2,Sox5-209,413917,Sox5-209;Sox5-212,Sox5;Sox5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,71,20678,ENSMUSG00000041540,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27441,cg01702758,-0.000000467,0.000002,-0.233093736,0.81584245,loss,ns,-0.00000149,0.00000341,-0.436731484,0.662610129,neg,ns,0.000449924,0.000997867,0.450885432,0.652387336,pos,ns,0.185494478,-0.0000214,0.0000343,-0.622684755,0.533949478,neg,ns,0.948104011,Pbx1,Pbx1_threeUTR,1,168183565,168183614,168183565,168183566,50,-,CGAGTCCATCACTGTATCCTCCTGTCTGGCTGATAACATGGCGAAGGGTA,3' UTR,1,168119364,168432270,312907,2,Pbx1-208,248656,Pbx1-208;Pbx1-205;Pbx1-206;Pbx1-201;Pbx1-202,Pbx1;Pbx1;Pbx1;Pbx1;Pbx1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,84,18514,ENSMUSG00000052534,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4993,cg09031266,0.0000032,0.0000068,0.470708708,0.638179792,gain,ns,-0.00000504,0.0000115,-0.436657492,0.662663739,neg,ns,0.018066249,0.003382477,5.341129184,0.000000179,pos,ns,6.746958199,-0.000688504,0.000116323,-5.918893767,8.58E-09,neg,yes,0.851916842,Sap130,Sap130_Exon,18,31711677,31711726,31711725,31711726,50,+,AACCCCTGGAAAGCTGCTTACCACCACTTTCAGAGGTACAGTGACGTCCG,"Exon (Sap130-202/Sap130, exon 18 of 22)",18,31634371,31723061,88691,1,Sap130-202,77306,Sap130-202;Sap130-208;Sap130-205;Sap130-201,Sap130;Sap130;Sap130;Sap130,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,4,269003,ENSMUSG00000024260,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22468,cg14444596,-0.00000926,0.00000194,-4.77568137,0.00000277,loss,ns,-0.00000144,0.00000329,-0.436583603,0.662717275,neg,ns,-0.00198623,0.000964854,-2.05858074,0.040369789,neg,ns,1.393943525,0.0000289,0.0000332,0.871723393,0.384033914,pos,ns,0.969485442,Wwox,Wwox_Intron,8,114759283,114759332,114759283,114759284,50,+,CGACATAATTAACCCTCTGGGGAGACTAATATTAGTTTATTAGAGACAAT,"Intron (Wwox-201/Wwox, intron 8 of 8)",8,114439655,115352708,913054,1,Wwox-201,319628,Wwox-201;Wwox-203;Wwox-204;Wwox-209,Wwox;Wwox;Wwox;Wwox,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,32,32,80707,ENSMUSG00000004637,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20542,cg26917253,-0.0000111,0.00000489,-2.264317717,0.024245102,loss,ns,-0.00000363,0.00000831,-0.43653988,0.662748956,neg,ns,-0.004622416,0.002433256,-1.899683217,0.058402614,neg,ns,1.233567714,0.0000171,0.0000837,0.203759551,0.838675096,pos,ns,0.727714438,Fam181a,Fam181a_Intron,12,103314850,103314899,103314850,103314851,50,-,CGCCGCCTGATTGGGATGCTTTGTATCTGGAGAGGCGCTCCTGATTGGCC,"Intron (Fam181a-203/Fam181a, intron 1 of 1)",12,103310975,103317065,6091,1,Fam181a-203,3875,Fam181a-203;Fam181a-202;Fam181a-201,Fam181a;Fam181a;Fam181a,0;-54;-60,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,9,100504156,ENSMUSG00000096753,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14234,cg02194519,0.00000875,0.00000285,3.066978601,0.00235293,gain,ns,-0.00000212,0.00000485,-0.436461542,0.66280572,neg,ns,0.005110275,0.00142016,3.598378867,0.000372596,pos,ns,3.428761406,-0.000210171,0.0000488,-4.303330369,0.0000226,neg,ns,0.089457427,Onecut1,Onecut1_Exon,9,74863127,74863176,74863127,74863128,50,-,CGCGCAGGTCAGCAATGGAAGTAATTCAGGGCAGATGGAAGAGATCAATA,"Exon (Onecut1-201/Onecut1, exon 1 of 2)",9,74861921,74891781,29861,1,Onecut1-201,1206,Onecut1-201;Onecut1-202,Onecut1;Onecut1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,16,28,15379,ENSMUSG00000043013,conserved gene and region,9,74862974,74863130,157,*,157,14,0.700636943,0.769607843,0.089171975,2.69E-10,CpGisland,TRUE,U3,Pr-B
17960,cg15543145,0.0000514,0.0000104,4.952619031,0.00000121,gain,yes,-0.00000769,0.0000176,-0.436416921,0.662838053,neg,ns,0.00856555,0.005160588,1.659801075,0.097965676,pos,ns,1.008926062,-0.000317488,0.000177472,-1.788942911,0.074600257,neg,ns,0.606868266,Mmp2,Mmp2_Exon,8,92840482,92840531,92840530,92840531,50,-,TTTGATGGCATCGCTCAGATCCGTGGTGAGATCTTCTTCTTCAAGGACCG,"Exon (Mmp2-201/Mmp2, exon 9 of 13)",8,92827291,92853420,26130,1,Mmp2-201,13191,Mmp2-201;Mmp2-204;Mmp2-202;Mmp2-203,Mmp2;Mmp2;Mmp2;Mmp2,0;0;-3000;-3419,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,4,17390,ENSMUSG00000031740,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12294,cg11832374,0.0000589,0.00000728,8.086349375,1.40E-14,gain,yes,-0.0000054,0.0000124,-0.436369476,0.662872433,neg,ns,0.006160664,0.003625007,1.699490334,0.090229966,pos,ns,1.044649205,-0.000114974,0.000124664,-0.922273488,0.357103162,neg,ns,0.072558324,Epha3,Epha3_fiveUTR,16,63864146,63864195,63864146,63864147,50,+,CGCTCGCAGGCTGATGTCAAGTTTGACACTGGAGATAAGGAGGAGTCTGG,Promoter (<=1kb),16,63543534,63864158,320625,2,Epha3-201,0,Epha3-201;Epha3-203;Epha3-206;Epha3-205;Epha3-202;Epha3-204,Epha3;Epha3;Epha3;Epha3;Epha3;Epha3,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,8,13837,ENSMUSG00000052504,conserved gene and region,16,63863867,63864151,285,*,285,21,0.631578947,0.757211539,0.073684211,1.58E-13,CpGisland,TRUE,NA,NRS
25393,cg09834361,0.00000131,0.00000274,0.479568432,0.631872452,gain,ns,0.00000203,0.00000465,0.436336261,0.662896502,pos,ns,-0.000191367,0.001363509,-0.140348873,0.888475499,neg,ns,0.051354544,-0.000031,0.0000469,-0.661227921,0.508957288,neg,ns,0.935457784,Gm9341,Gm9341_Intergenic_downstream,7,136197486,136197535,136197486,136197487,50,+,CGGTTGGCAGGAGGCATGTTTTTGCAGTAGCTTTAGCGATTATAGGAAAT,Distal Intergenic,7,135952798,135953783,986,1,Gm9341-201,244688,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,27,28,668764,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11060,cg20398606,-0.00000248,0.00000179,-1.389833477,0.16557669,loss,ns,0.00000132,0.00000304,0.43617336,0.663014552,pos,ns,0.00109852,0.000889406,1.235117327,0.217722116,pos,ns,0.662097454,-0.0000371,0.0000306,-1.212461322,0.226259042,neg,ns,0.9456611,Hmg20a,Hmg20a_Exon,9,56481598,56481647,56481598,56481599,50,+,CGCTACCTTGATGAAGCAGACAGAGATAAGGAGCGTTACATGAAGGAACT,"Exon (Hmg20a-201/Hmg20a, exon 5 of 10)",9,56418609,56496936,78328,1,Hmg20a-201,62989,Hmg20a-201;Hmg20a-205;Hmg20a-203;Hmg20a-206,Hmg20a;Hmg20a;Hmg20a;Hmg20a,0;0;62778;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,66867,ENSMUSG00000032329,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7947,cg25200027,0.0000897,0.0000122,7.346355826,1.82E-12,gain,yes,-0.00000904,0.0000207,-0.436131296,0.663045035,neg,ns,0.00874738,0.006075192,1.439852485,0.150918208,pos,ns,0.82125836,0.0000314,0.000208925,0.150433692,0.880520295,pos,ns,0.517822562,Runx2,Runx2_threeUTR,17,44658530,44658579,44658578,44658579,50,-,CTCTGTCCTTGTGGATTAAAAGGACTTGGTGCAGAGTTCAGGGAGGGCCG,3' UTR,17,44495987,44736176,240190,2,Runx2-212,77597,Runx2-212;Runx2-214;Runx2-203;Runx2-202;Runx2-213;Runx2-204;Runx2-210;Runx2-211;Runx2-207;Runx2-201;Runx2-209;Runx2-205;Runx2-206,Runx2;Runx2;Runx2;Runx2;Runx2;Runx2;Runx2;Runx2;Runx2;Runx2;Runx2;Runx2;Runx2,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,10,20,12393,ENSMUSG00000039153,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22551,cg16574861,-0.0000233,0.00000721,-3.228381399,0.001378308,loss,ns,-0.00000534,0.0000123,-0.435950606,0.663175989,neg,ns,-0.005826055,0.003588959,-1.623327235,0.105535875,neg,ns,0.976599883,0.000303952,0.000123424,2.462667267,0.01433425,pos,ns,0.866298254,Gm13973,Gm13973_Intron,2,115095711,115095760,115095711,115095712,50,-,CGATTTGCAATTGCTATGAAACAAATTGCACACTGATGAAGGATGATTGT,"Intron (Gm28494-201/Gm28494-201, intron 1 of 3)",2,115036419,115037312,894,2,Gm13973-201,-58448,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,13,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6930,cg08268145,-0.0000371,0.0000143,-2.593970101,0.009937938,loss,ns,0.0000106,0.0000243,0.435891263,0.663219,pos,ns,0.004469185,0.007116918,0.627966389,0.530488283,pos,ns,0.275324204,-0.00054204,0.00024475,-2.214667481,0.027509874,neg,ns,0.600681498,Rims2,Rims2_Exon,15,39681570,39681619,39681570,39681571,50,+,CGCATGGATCACAAATCTTTTATGGGAGTGGCCCAGATACTTTTAGATGA,"Exon (Rims2-202/Rims2, exon 27 of 27)",15,39198332,39681940,483609,1,Rims2-202,483238,Rims2-202;Rims2-205;Rims2-201;Rims2-206;Rims2-204,Rims2;Rims2;Rims2;Rims2;Rims2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,16,19,116838,ENSMUSG00000037386,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22782,cg16904737,0.0000116,0.00000695,1.664224444,0.097078007,gain,ns,0.00000515,0.0000118,0.435627603,0.663410108,pos,ns,-0.00208136,0.003460163,-0.601520857,0.547932748,neg,ns,0.261272742,0.000116262,0.000118995,0.977034031,0.329314125,pos,ns,0.140498777,Dmbx1,Dmbx1_Promoter,4,115944236,115944285,115944236,115944237,50,+,CGCTGACAAGACTAACAAAGCAATTTGCCACGAGCCATCTCCTGGACAGG,Promoter (4-5kb),4,115915120,115939926,24807,2,Dmbx1-202,-4310,Dmbx1-203;Dmbx1-202,Dmbx1;Dmbx1,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,9,42,140477,ENSMUSG00000028707,conserved gene but different region,4,115943986,115944303,318,*,318,35,0.694968554,0.925340871,0.110062893,1.76E-28,CpGisland,TRUE,U13,Hc-P
21633,cg27160327,0.00000687,0.00000355,1.937580451,0.053582465,gain,ns,-0.00000262,0.00000603,-0.435446824,0.663541155,neg,ns,-0.006681886,0.001765783,-3.784091864,0.000185159,neg,ns,3.732455852,0.00028548,0.0000607,4.701189395,0.0000039,pos,ns,0.917129349,Degs2,Degs2_Exon,12,108683353,108683402,108683353,108683354,50,-,CGTCTGTGGCAAAGAGCCCCGAAGCTAAGAGCCCCCTTCAGTCGCAGCCT,"Exon (Evl-201/Evl, exon 11 of 14)",12,108678711,108692183,13473,2,Degs2-203,8781,Degs2-203;Degs2-202;Evl-202;Evl-201;Evl-203;Evl-206;Evl-204;Evl-205;Evl-207,Degs2;Degs2;Evl;Evl;Evl;Evl;Evl;Evl;Evl,0;18895;0;0;0;0;0;0;-2695,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,70059,ENSMUSG00000021263,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13043,cg20033770,0.00000427,0.00000194,2.200592634,0.028502069,gain,ns,-0.00000143,0.0000033,-0.435167247,0.663743841,neg,ns,0.000781618,0.000965972,0.809151187,0.419048778,pos,ns,0.377735422,-0.000115711,0.0000332,-3.48320546,0.000566731,neg,ns,0.962840629,Chd3,Chd3_Exon,11,69345460,69345509,69345508,69345509,50,+,AAGAGGGTTACCGGTGTGGGGTGAGGCTCCGTGCCCTTGCTGGCCAGCCG,Promoter (<=1kb),11,69343273,69346019,2747,2,Chd3-205,510,Chd3-205;Chd3-203;Chd3-202;Chd3-211;Chd3-201;Chd3-204;Chd3-208;Rnf227-201;Rnf227-203;Rnf227-202,Chd3;Chd3;Chd3;Chd3;Chd3;Chd3;Chd3;Rnf227;Rnf227;Rnf227,0;0;0;0;0;0;0;4999;4689;4651,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,22,26,216848,ENSMUSG00000018474,conserved gene but different region,11,69345353,69345644,292,*,292,17,0.609589041,0.656613757,0.058219178,1.94E-09,CpGisland,TRUE,U10,Tr-S
10920,cg19842981,0.0000067,0.0000045,1.487678215,0.137852229,gain,ns,-0.00000333,0.00000765,-0.43495809,0.663895491,neg,ns,-0.005189465,0.002241796,-2.314869232,0.021273062,neg,ns,1.672169995,0.0000751,0.0000771,0.974623411,0.330506994,pos,ns,0.878199239,Tcf7l2,Tcf7l2_Intron,19,55888016,55888065,55888016,55888017,50,-,CGTTGACAGAATTTACAATGAGAGCAGAGACCGCATAATGGGACCGCTGC,"Intron (Tcf7l2-213/Tcf7l2, intron 4 of 13)",19,55741820,55933229,191410,1,Tcf7l2-213,146196,Tcf7l2-213;Tcf7l2-201;Tcf7l2-208;Tcf7l2-211;Tcf7l2-212;Tcf7l2-206;Tcf7l2-204;Tcf7l2-205;Tcf7l2-222;Tcf7l2-215;Tcf7l2-214;Tcf7l2-207;Tcf7l2-202;Tcf7l2-209;Tcf7l2-210;Tcf7l2-217,Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,55,88,21416,ENSMUSG00000024985,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9944,cg14110865,0.00000354,0.00000237,1.490600985,0.137083065,gain,ns,-0.00000175,0.00000403,-0.434907076,0.66393248,neg,ns,0.002777546,0.001180467,2.35292051,0.019251222,pos,ns,1.715541703,-0.000098,0.0000406,-2.41442191,0.016339114,neg,ns,0.054705207,Maml3,Maml3_Intron,3,51701636,51701685,51701636,51701637,50,+,CGTACAGCAGGTAGCCTGGCAACTGAGAGCACAATACCGAGCAGATGGTG,"Intron (Maml3-201/Maml3, intron 1 of 3)",3,51685907,51796536,110630,2,Maml3-201,94851,Maml3-201;Maml3-202,Maml3;Maml3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,32,433586,ENSMUSG00000061143,mapped to different genes,3,51701433,51701790,358,*,358,25,0.636871508,0.691279833,0.069832402,1.94E-15,CpGisland,TRUE,U4,Pr-F
6470,cg25578298,0.00000291,0.00000553,0.526724663,0.598761487,gain,ns,-0.00000409,0.00000939,-0.434901484,0.663936535,neg,ns,0.000756167,0.002751907,0.274779266,0.783668863,pos,ns,0.105867409,-0.0000114,0.0000946,-0.120279142,0.904339943,neg,ns,0.888448672,Rc3h2,Rc3h2_threeUTR,2,37382961,37383010,37382961,37382962,50,-,CGCCAGATGCGCCTGCTGTCGTACACAGGAGCATACATTCCAGAAGGTAC,3' UTR,2,37370069,37422903,52835,2,Rc3h2-202,39893,Rc3h2-202;Rc3h2-201;Rc3h2-203;Rc3h2-205;Rc3h2-206;Rc3h2-210,Rc3h2;Rc3h2;Rc3h2;Rc3h2;Rc3h2;Rc3h2,0;0;0;0;-1701;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,7,10,319817,ENSMUSG00000075376,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7966,cg01486146,0.0000558,0.00000576,9.688228796,1.46E-19,gain,yes,-0.00000425,0.00000978,-0.434852717,0.663971896,neg,ns,0.012622363,0.002865079,4.405590271,0.0000145,pos,ns,4.837142867,-0.000275148,0.0000985,-2.792530295,0.005554704,neg,ns,0.120990609,Pax2,Pax2_Intergenic_upstream,19,44671116,44671165,44671164,44671165,50,-,CCCATCAAAAAACTTCTATTAGTAATGGAGACCTCGCCGGAGACCTTCCG,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-84929,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,19,44671150,44671210,61,*,61,7,0.62295082,1.196078431,0.114754098,0.00000522,CpGisland,TRUE,U13,Hc-P
16014,cg02099108,-0.0000182,0.00000521,-3.487034296,0.000558983,loss,ns,-0.00000385,0.00000884,-0.434828176,0.663989691,neg,ns,-0.000927731,0.002591221,-0.358028281,0.720565811,neg,ns,0.142326348,-0.000122475,0.0000891,-1.374399414,0.170310471,neg,ns,0.930686936,Bnc2,Bnc2_Intergenic_downstream,4,84209137,84209186,84209185,84209186,50,+,GCCAAGAAATGTCATCTGAATACCATTATTTAATCGAAGATTAGCCCACG,Distal Intergenic,4,84275380,84291757,16378,2,Bnc2-218,82571,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,91,242509,ENSMUSG00000028487,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6391,cg00003994,0.00000831,0.00000352,2.363132086,0.018738207,gain,ns,-0.0000026,0.00000597,-0.434765117,0.664035417,neg,ns,0.003688166,0.001749716,2.107865913,0.035845114,pos,ns,1.445570029,-0.000122969,0.0000602,-2.043605109,0.041837597,neg,ns,0.043476096,Meox2,Meox2_Exon,12,37108995,37109044,37108995,37108996,50,-,CGAAGAGGGCATGTTTGCCAGCCAGCATCACAGGGGGCACCACCACCACC,Promoter (<=1kb),12,37108540,37179534,70995,1,Meox2-201,455,Meox2-201,Meox2,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,3,17286,ENSMUSG00000036144,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
24858,cg22221367,-4.56E-08,0.00000166,-0.027457614,0.978112414,loss,ns,-0.00000123,0.00000282,-0.434746646,0.664048812,neg,ns,0.001339418,0.000825989,1.621591985,0.105907339,pos,ns,0.975073945,-0.00000239,0.0000284,-0.084000195,0.933110495,neg,ns,0.07073779,Zc3h6,Zc3h6_fiveUTR,2,128967415,128967464,128967415,128967416,50,-,CGGGTGCCGCCATGTTGGTGAGGAGAAATCACCGTTACGGCCACTGTCCA,Promoter (<=1kb),2,128967402,129018563,51162,1,Zc3h6-202,13,Zc3h6-202;Zc3h6-201,Zc3h6;Zc3h6,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,7,8,78751,ENSMUSG00000042851,conserved gene and region,2,128967149,128967791,643,*,643,69,0.6718507,0.959162055,0.107309487,8.30E-55,CpGisland,TRUE,U1,Pr-A
26680,cg18981120,-0.00000991,0.00000535,-1.854338329,0.064640326,loss,ns,0.00000395,0.00000908,0.434644605,0.664122808,pos,ns,-0.00242395,0.002660439,-0.911108928,0.3629459,neg,ns,0.440158105,-0.0000241,0.0000915,-0.263092831,0.792653804,neg,ns,0.852594739,Pfkfb1,Pfkfb1_Exon,X,150625133,150625182,150625181,150625182,50,-,TGCTCCTGCTTGGGTCTGGCCCAGCCACCTGTCCTACATCAAGATCTTCG,"Exon (Pfkfb1-206/Pfkfb1, exon 10 of 10)",20,150588229,150625183,36955,1,Pfkfb1-206,36904,Pfkfb1-206;Pfkfb1-201;Pfkfb1-202;Pfkfb1-205;Pfkfb1-204;Pfkfb1-207,Pfkfb1;Pfkfb1;Pfkfb1;Pfkfb1;Pfkfb1;Pfkfb1,0;0;0;0;11199;-159,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,18639,ENSMUSG00000025271,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17702,cg00920242,0.000011,0.00000512,2.155604325,0.031883949,gain,ns,0.00000378,0.00000869,0.434626333,0.664136059,pos,ns,0.005088055,0.002546489,1.998066554,0.046582752,pos,ns,1.331774859,-0.000133391,0.0000876,-1.52318382,0.128732154,neg,ns,0.851349633,Wnt7a,Wnt7a_Exon,6,91394516,91394565,91394516,91394517,50,+,CGGCAGAGCAGCCACCCCACTTCCAGCCCTCGTCCCGGTGGTACTGGCCT,"Exon (Wnt7a-201/Wnt7a, exon 3 of 4)",6,91363981,91411363,47383,2,Wnt7a-201,16798,Wnt7a-201,Wnt7a,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,22421,ENSMUSG00000030093,conserved gene and region,6,91394413,91394592,180,*,180,16,0.616666667,0.9479921,0.088888889,1.08E-11,CpGisland,TRUE,NA,NRS
21713,cg04324237,-0.00000365,0.00000111,-3.288678396,0.001122388,loss,ns,-0.000000819,0.00000188,-0.434584417,0.664166457,neg,ns,0.0000146,0.00055202,0.026477552,0.978893474,pos,ns,0.009264567,-0.00000342,0.000019,-0.180194606,0.857117528,neg,ns,0.033975709,Prpf38b,Prpf38b_Exon,3,108911160,108911209,108911208,108911209,50,+,GTACCTTAAAGTAGATCTCGTCCACCACCTCGTGGTAGGTCTTGAGCTCG,Promoter (<=1kb),3,108902805,108911696,8892,2,Prpf38b-204,487,Prpf38b-204;Prpf38b-201;Prpf38b-208;Prpf38b-206;Prpf38b-205;Prpf38b-207,Prpf38b;Prpf38b;Prpf38b;Prpf38b;Prpf38b;Prpf38b,0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,13,66921,ENSMUSG00000027881,conserved gene but different region,3,108910989,108911237,249,*,249,19,0.614457831,0.838532435,0.076305221,1.44E-12,CpGisland,TRUE,U1,Pr-A
2762,cg17879189,0.0000138,0.00000628,2.192264654,0.029103611,gain,ns,-0.00000464,0.0000107,-0.43453506,0.664202251,neg,ns,0.002500288,0.003126997,0.799581,0.424565842,pos,ns,0.37205495,-0.00000611,0.000107537,-0.056848897,0.954702186,neg,ns,0.113673722,Prdm13,Prdm13_Promoter,4,21686051,21686100,21686099,21686100,50,+,GGCGGGACCATTAATCCTCAGCATGGGGTATTGTCCTCCAGACAGTTACG,Promoter (<=1kb),4,21677481,21685963,8483,2,Prdm13-202,-88,Prdm13-205;Prdm13-201;Prdm13-202;Prdm13-203;Prdm13-206;Prdm13-204,Prdm13;Prdm13;Prdm13;Prdm13;Prdm13;Prdm13,0;0;0;0;0;-206,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,19,23,230025,ENSMUSG00000040478,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
12210,cg26692980,-0.0000208,0.0000036,-5.782103393,0.000000018,loss,yes,0.00000265,0.00000611,0.434507574,0.664222184,pos,ns,-0.003512793,0.001789757,-1.962720416,0.050572696,neg,ns,1.296083895,0.000086,0.0000615,1.397677898,0.163209184,pos,ns,0.94290206,Iqch,Iqch_Intron,9,63468631,63468680,63468631,63468632,50,-,CGTGAATCCACCTTCTGGCTTAATGGCAATATGGCACTCCCAGCTGTGGT,"Intron (Gm16759-204/Gm16759-204, intron 1 of 3)",9,63421455,63602493,181039,2,Iqch-201,133813,Iqch-201;Iqch-203;Iqch-204;Iqch-202;Iqch-206,Iqch;Iqch;Iqch;Iqch;Iqch,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,22,78250,ENSMUSG00000037801,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18648,cg03596782,0.000106007,0.0000129,8.236236503,5.03E-15,gain,yes,-0.0000095,0.0000219,-0.434456015,0.664259577,neg,ns,0.022781571,0.006405956,3.556310631,0.000434829,pos,ns,3.361681109,-0.000754397,0.0002203,-3.424403953,0.000699078,neg,ns,0.260498485,Skap1,Skap1_Intron,11,96579079,96579128,96579079,96579080,50,-,CGGGAACAGATGGGCTTTCATTGTGAGACTCCGCCTGTATGCAAATGTGA,"Intron (Skap1-204/Skap1, intron 4 of 12)",11,96464593,96758941,294349,1,Skap1-204,114486,Skap1-204;Skap1-203;Skap1-209;Skap1-201;Skap1-205;Skap1-206;Skap1-208,Skap1;Skap1;Skap1;Skap1;Skap1;Skap1;Skap1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,40,46,78473,ENSMUSG00000057058,conserved gene and region,11,96578991,96579282,292,*,292,18,0.547945206,0.829545455,0.061643836,2.30E-10,CpGisland,TRUE,U9,En-Pp
8069,cg16100840,0.00000464,0.00000501,0.924899098,0.355737798,gain,ns,-0.0000037,0.00000851,-0.434383401,0.66431224,neg,ns,0.005131421,0.002494543,2.057058779,0.04051693,pos,ns,1.39236347,-0.000162938,0.0000858,-1.899334239,0.05844863,neg,ns,0.932222474,Pax2,Pax2_Intergenic_upstream,19,44717587,44717636,44717587,44717588,50,-,CGCTCCTGACCTTGCAGGACAGCTAATCCATCCGCACATCTATCTTAATT,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-38458,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,19,44717536,44717731,196,*,196,11,0.515306122,0.921367521,0.056122449,0.00000383,CpGisland,TRUE,U13,Hc-P
2265,cg14741707,0.0000109,0.00000187,5.857515981,0.000000012,gain,yes,-0.00000138,0.00000317,-0.434352227,0.66433485,neg,ns,0.000153167,0.000928691,0.164928095,0.869108072,pos,ns,0.060926216,-0.0000217,0.0000319,-0.680807544,0.496501467,neg,ns,0.032680491,Meis1,Meis1_Intergenic_downstream,11,18878273,18878322,18878273,18878274,50,+,CGGAACCATTGAGCGAGTGCAATAAGGCGTGAGGGGGAACTAATCTTCCC,Downstream (1-2kb),11,18880668,19012002,131335,2,Meis1-203,133680,Meis1-206;Meis1-202;Meis1-209;Meis1-201;Meis1-203;Meis1-208;Meis1-207,Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1,0;0;0;0;0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,17,88,17268,ENSMUSG00000020160,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
5855,cg10376094,-0.00000486,0.00000388,-1.252176908,0.211449295,loss,ns,-0.00000286,0.00000659,-0.434099344,0.66451827,neg,ns,-0.002233539,0.001930059,-1.15723873,0.248065739,neg,ns,0.605433213,-0.0000116,0.0000664,-0.174112237,0.861890903,neg,ns,0.904772476,Rgs12,Rgs12_Exon,5,35030543,35030592,35030543,35030544,50,-,CGGCTTTCAAAGAGAGAAGAATCTATTGCAAAGATTGGGAAAAAAAAATA,"Exon (Rgs12-201/Rgs12, exon 16 of 17)",5,34949445,35033595,84151,1,Rgs12-201,81098,Rgs12-201;Rgs12-202;Rgs12-206;Rgs12-207;Rgs12-204;Rgs12-203;Rgs12-205;Rgs12-216;Rgs12-215;Rgs12-213;Rgs12-211,Rgs12;Rgs12;Rgs12;Rgs12;Rgs12;Rgs12;Rgs12;Rgs12;Rgs12;Rgs12;Rgs12,0;0;0;0;0;0;0;7787;6202;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,71729,ENSMUSG00000029101,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21561,cg09334482,-0.0000056,0.00000549,-1.020453115,0.308309311,loss,ns,-0.00000404,0.00000932,-0.434008436,0.664584212,neg,ns,-0.004193391,0.002729974,-1.536055498,0.125544754,neg,ns,0.901201432,0.000233779,0.0000939,2.490093331,0.013294519,pos,ns,0.895615859,Zfhx3,Zfhx3_Intron,8,108301403,108301452,108301403,108301404,50,+,CGATATTTGCATACTATACATACCAGGAATGTAAAACAGCTGCTTGGCCC,"Intron (Zfhx3-204/Zfhx3, intron 2 of 15)",8,107942644,108961630,1018987,1,Zfhx3-204,358759,Zfhx3-204;Zfhx3-207,Zfhx3;Zfhx3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,114,177,11906,ENSMUSG00000038872,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5067,cg12791206,-0.000000401,0.00000173,-0.231857399,0.81680175,loss,ns,0.00000127,0.00000294,0.433951664,0.664625393,pos,ns,0.002183693,0.000860099,2.538887322,0.011609288,pos,ns,1.935194423,-0.0000603,0.0000296,-2.040105932,0.042187031,neg,ns,0.076326195,Fosl2,Fosl2_Exon,5,32136706,32136755,32136754,32136755,50,-,GTACCAGGATTATCCCGGGAACTTTGACACCTCGTCCCGGGGCAGCAGCG,Promoter (<=1kb),5,32135801,32157842,22042,1,Fosl2-201,905,Fosl2-201;Fosl2-202,Fosl2;Fosl2,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,8,14284,ENSMUSG00000029135,conserved gene and region,5,32136243,32136838,596,*,596,67,0.686241611,0.96036556,0.112416107,9.84E-55,CpGisland,TRUE,U1,Pr-A
14012,cg12639822,0.0000072,0.00000267,2.697743202,0.007363318,gain,ns,-0.00000197,0.00000453,-0.433909111,0.664656261,neg,ns,-0.001220049,0.001328256,-0.918534509,0.359053214,neg,ns,0.444841181,0.0000124,0.0000457,0.272414944,0.785484342,pos,ns,0.939952192,Memo1,Memo1_Exon,17,74217043,74217092,74217091,74217092,50,-,TCAATGGATCTATAAATCTCCCCCTGGGATTCATCATAGTAACTGTAACG,"Exon (Memo1-210/Memo1, exon 7 of 9)",17,74199036,74294863,95828,2,Memo1-210,77771,Gm9316-201;Memo1-210;Memo1-208;Memo1-201;Memo1-204;Memo1-206;Memo1-203;Memo1-209,Gm9316;Memo1;Memo1;Memo1;Memo1;Memo1;Memo1;Memo1,5085;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,76890,ENSMUSG00000058704,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13634,cg16756631,0.00000942,0.00000179,5.265166684,0.000000262,gain,yes,-0.00000132,0.00000304,-0.433790718,0.664742148,neg,ns,0.001919199,0.000890496,2.155201509,0.031915728,pos,ns,1.495995248,-0.0000329,0.0000306,-1.073874441,0.283714133,neg,ns,0.049876995,Dlx2,Dlx2_fiveUTR,2,71546352,71546401,71546400,71546401,50,+,GAGTGCATATCAGCCACTAGACTGTCAAAGACTCCAGTCATCCTGGCCCG,Promoter (<=1kb),2,71543408,71546754,3347,2,Dlx2-201,353,Dlx2-201;Dlx2-202,Dlx2;Dlx2,0;-402,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,8,13392,ENSMUSG00000023391,conserved gene and region,2,71546400,71547005,606,*,606,55,0.671617162,0.823328887,0.090759076,1.61E-39,CpGisland,TRUE,U3,Pr-B
19774,cg10513860,-0.00000634,0.00000215,-2.945745436,0.003465816,loss,ns,-0.00000159,0.00000365,-0.433769775,0.664757341,neg,ns,-0.001010537,0.001070561,-0.943931908,0.345939527,neg,ns,0.460999812,-0.00000372,0.0000368,-0.10103634,0.919586928,neg,ns,0.954393203,Atp6v0a1,Atp6v0a1_Exon,11,101048468,101048517,101048516,101048517,50,+,GGATGCTGAGATTATTCAGCATGACCAGCTCTCCACCCACTCAGAGGACG,"Exon (Atp6v0a1-203/Atp6v0a1, exon 18 of 21)",11,101009452,101062424,52973,1,Atp6v0a1-203,39016,Atp6v0a1-209;Atp6v0a1-203;Atp6v0a1-201;Atp6v0a1-210;Atp6v0a1-202;Atp6v0a1-207;Atp6v0a1-204,Atp6v0a1;Atp6v0a1;Atp6v0a1;Atp6v0a1;Atp6v0a1;Atp6v0a1;Atp6v0a1,39016;0;0;0;0;0;4653,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,11975,ENSMUSG00000019302,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26216,cg19661431,-0.00000485,0.00000304,-1.595982958,0.111511486,loss,ns,0.00000224,0.00000516,0.433747601,0.664773428,pos,ns,-0.000462505,0.001512355,-0.305818057,0.759948443,neg,ns,0.119215871,0.0000141,0.000052,0.271036152,0.78654361,pos,ns,0.030739929,Hs2st1,Hs2st1_Exon,3,144569795,144569844,144569795,144569796,50,+,CGCGAAGGCCACCACCGCCAGCAGCTGCAACTTGGGCGGCATCATAATCC,Promoter (<=1kb),3,144429706,144570181,140476,2,Hs2st1-201,337,Hs2st1-201;Hs2st1-202;Hs2st1-203;Selenof-203;Selenof-201;Selenof-202;Selenof-206,Hs2st1;Hs2st1;Hs2st1;Selenof;Selenof;Selenof;Selenof,0;0;0;-460;-582;-849;-870,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,6,23908,ENSMUSG00000040151,conserved gene and region,3,144569789,144570495,707,*,707,84,0.710042433,0.959232459,0.118811881,9.67E-71,CpGisland,TRUE,U1,Pr-A
3111,cg10556636,0.000000193,0.0000155,0.012504623,0.990031058,gain,ns,-0.0000114,0.0000263,-0.43368434,0.664819322,neg,ns,0.002079189,0.007695173,0.270193995,0.787190799,pos,ns,0.103919991,0.000414436,0.000264636,1.566059279,0.118354927,pos,ns,0.267865581,Lrmda,Lrmda_Intron,14,22783364,22783413,22783412,22783413,50,+,GTTCCACCAGCTGCACAGTGGCTATTATGAAAGTATTTCAGCCTGCGTCG,"Intron (Lrmda-201/Lrmda, intron 5 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,763652,Lrmda-201;Lrmda-204;Lrmda-206,Lrmda;Lrmda;Lrmda,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13252,cg27046391,0.00000577,0.00000373,1.547656719,0.12272521,gain,ns,-0.00000274,0.00000633,-0.43365032,0.664844003,neg,ns,0.004154183,0.001854289,2.240309884,0.025779032,pos,ns,1.588733392,-0.000152947,0.0000638,-2.398461823,0.017054824,neg,ns,0.909539811,Pebp4,Pebp4_Intron,14,69885697,69885746,69885697,69885698,50,+,CGTCCCTGCAGTGATGTATAGTCACATTAGCTGAAATACCGTATTACATG,"Intron (Pebp4-201/Pebp4, intron 3 of 6)",14,69840420,70059918,219499,1,Pebp4-201,45277,Pebp4-201,Pebp4,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,14,14,73523,ENSMUSG00000022085,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10908,cg08664231,-0.000000686,0.00000349,-0.196515337,0.844335597,loss,ns,-0.00000257,0.00000593,-0.433640758,0.66485094,neg,ns,-0.001065743,0.001736279,-0.613808974,0.539791714,neg,ns,0.267773786,0.0000293,0.0000597,0.49108965,0.623710518,pos,ns,0.488767856,Gm8614,Gm8614_Intergenic_downstream,18,55816000,55816049,55816000,55816001,50,+,CGCCTGGAGGGATCAACACAGTTTTTTAAAGCAAACATAACACAAGTGCT,Distal Intergenic,18,55837972,55838949,978,2,Gm8614-201,22900,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,667409,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16680,cg11112789,-0.00000575,0.0000098,-0.586757867,0.55779338,loss,ns,-0.00000722,0.0000166,-0.433640422,0.664851184,neg,ns,-0.003271327,0.004875469,-0.670976937,0.502734839,neg,ns,0.298661018,-0.0000763,0.000167667,-0.455037196,0.649400989,neg,ns,0.767054036,Gm49060,Gm49060_Intergenic_upstream,14,86057109,86057158,86057157,86057158,50,+,AGCATACAATAGCTAGTAGTCCAGCTAACTCAATAAAAACAATATTAACG,Distal Intergenic,14,86204742,86205372,631,1,Gm49060-201,-147584,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2940,cg16278300,-0.00000404,0.00000166,-2.435173631,0.015448254,loss,ns,0.00000122,0.00000282,0.433550841,0.664916177,pos,ns,0.001004121,0.000826372,1.21509473,0.225254606,pos,ns,0.647326321,-0.000085,0.0000284,-2.992332994,0.00299094,neg,ns,0.962373829,Reln,Reln_threeUTR,5,22080721,22080770,22080769,22080770,50,-,TATCTTCTGTGGAAAGATCTACATCCCTGGTGGTGGCAAAATTGAACTCG,3' UTR,5,21884454,22344702,460249,2,Reln-207,263932,Reln-207;Reln-201;Reln-209;Reln-212,Reln;Reln;Reln;Reln,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,6,19699,ENSMUSG00000042453,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19853,cg11525050,-0.00000168,0.0000116,-0.145107936,0.884719952,loss,ns,0.00000853,0.0000197,0.433533034,0.664929096,pos,ns,0.001445698,0.005766246,0.25071739,0.802198705,pos,ns,0.095718043,-0.0000739,0.000198301,-0.372863743,0.709504668,neg,ns,0.781874423,Nlgn3,Nlgn3_Exon,X,101318635,101318684,101318683,101318684,50,-,CCTTTTCCCCTGCAACTTCTCCAAGAATGATGTTATGCTCAGTGCTGTCG,"Exon (Gm21986-201/Gm21986-201, exon 10 of 11)",20,101299168,101325963,26796,1,Nlgn3-202,19467,Nlgn3-202;Nlgn3-203;Nlgn3-206;Nlgn3-201;Nlgn3-204,Nlgn3;Nlgn3;Nlgn3;Nlgn3;Nlgn3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,11,16,245537,ENSMUSG00000031302,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17223,cg19297793,0.0000884,0.0000148,5.986627044,5.92E-09,gain,yes,-0.0000109,0.0000251,-0.433466514,0.664977359,neg,ns,0.024847411,0.007349784,3.380699712,0.000815574,pos,ns,3.088536653,-0.000817703,0.000252758,-3.235114683,0.001347257,neg,ns,0.313486673,Efna1,Efna1_Intron,3,89277568,89277617,89277616,89277617,50,+,ATAAACATAGAAGCCATTTCAGAACAGGTATTTCAGCTCTGGGCCTGGCG,"Intron (Efna1-201/Efna1, intron 1 of 4)",3,89271733,89279645,7913,2,Efna1-201,2028,Efna1-201;Efna1-202;Efna1-203,Efna1;Efna1;Efna1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,3,13636,ENSMUSG00000027954,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
25124,cg14453487,0.0000666,0.0000165,4.028179281,0.0000708,gain,ns,-0.0000122,0.0000281,-0.433273442,0.665117449,neg,ns,0.045516385,0.008228017,5.531877885,6.74E-08,pos,ns,7.171140582,-0.001082812,0.000282961,-3.826721387,0.000157072,neg,ns,0.387583162,Ahdc1,Ahdc1_Intron,4,133042970,133043019,133042970,133042971,50,-,CGGTGTGGGCTGGAGCAGCTGCAGTGGTTCGAGTGTCACACTATCTCTCC,"Intron (Ahdc1-210/Ahdc1, intron 2 of 3)",4,133011260,133060820,49561,1,Ahdc1-210,31710,Ahdc1-210;Ahdc1-203;Ahdc1-204;Ahdc1-205;Ahdc1-207;Ahdc1-211;Ahdc1-209;Ahdc1-206;Ahdc1-201;Ahdc1-202,Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,35,49,230793,ENSMUSG00000037692,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
16073,cg16039507,0.00000207,0.00000198,1.046403981,0.296189758,gain,ns,0.00000146,0.00000336,0.433208072,0.665164883,pos,ns,0.00213043,0.000984382,2.164230519,0.031209929,pos,ns,1.505707218,-0.0000308,0.0000339,-0.909168584,0.363967438,neg,ns,0.958346969,Zfp407,Zfp407_Intron,18,84353465,84353514,84353513,84353514,50,+,TGCTGTTCGATATAAGTGATCTCTCAGGGCAGGCTGGAGACCTTAAATCG,"Intron (Zfp407-201/Zfp407, intron 2 of 2)",18,84128027,84558425,430399,2,Zfp407-201,204911,Zfp407-201;Zfp407-202;Zfp407-203,Zfp407;Zfp407;Zfp407,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,32,240476,ENSMUSG00000048410,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15428,cg10974342,-0.0000277,0.00000666,-4.162095266,0.0000409,loss,ns,-0.0000049,0.0000113,-0.433204362,0.665167576,neg,ns,-0.0000424,0.003312623,-0.012785976,0.989806769,neg,ns,0.00444958,-0.000193217,0.000113921,-1.696066225,0.090877264,neg,ns,0.091588435,Arrdc3,Arrdc3_Exon,13,80883345,80883394,80883345,80883346,50,-,CGCCTGCGCACTGGGGTTGTTTTTCACAAAGCTGCTCTTAAAGTGAGCTG,Promoter (<=1kb),13,80883384,80889643,6260,1,Arrdc3-202,0,Arrdc3-202;Arrdc3-203;Arrdc3-201;Arrdc3-205,Arrdc3;Arrdc3;Arrdc3;Arrdc3,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,8,105171,ENSMUSG00000074794,mapped to different genes,13,80882917,80883352,436,*,436,54,0.713302752,0.975957553,0.123853211,8.85E-47,CpGisland,TRUE,U1,Pr-A
15153,cg03767531,0.0000469,0.00000448,10.47091359,3.62E-22,gain,yes,0.00000329,0.0000076,0.433183518,0.665182701,pos,ns,0.008861343,0.002227975,3.977308302,0.0000868,pos,ns,4.06141997,-0.000134267,0.0000766,-1.752380103,0.080697114,neg,ns,0.086928853,Cerkl,Cerkl_Promoter,2,79456950,79456999,79456950,79456951,50,-,CGGCCCCTTTGTGGCCAGAAGAAAGTGGCCCATCTGTCGCCAGTTAGAGA,Promoter (<=1kb),2,79338569,79456785,118217,2,Cerkl-210,-214,Cerkl-210;Neurod1-201,Cerkl;Neurod1,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,13,15,228094,ENSMUSG00000075256,mapped to different genes,2,79456843,79457022,180,*,180,14,0.622222222,0.830039526,0.077777778,1.72E-09,CpGisland,TRUE,NA,NRS
26194,cg23262134,0.0000649,0.00000379,17.13170674,9.28E-47,gain,yes,-0.00000279,0.00000644,-0.433151115,0.665206214,neg,ns,0.003788431,0.001886777,2.007885268,0.045522838,pos,ns,1.341770674,0.0000828,0.0000649,1.276296489,0.202806073,pos,ns,0.094214468,Ovol2,Ovol2_fiveUTR,2,144332120,144332169,144332168,144332169,50,+,GAAAAGGCACCAGGAAACTTGGGACTGAGCATGCGCCCTGCAACATAACG,Promoter (<=1kb),2,144305175,144332146,26972,2,Ovol2-201,0,Ovol2-202;Ovol2-201;Ovol2-203,Ovol2;Ovol2;Ovol2,-425;0;-794,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,5,107586,ENSMUSG00000037279,conserved gene but different region,2,144332153,144332212,60,*,60,8,0.65,1.304347826,0.133333333,0.000000221,CpGisland,TRUE,U3,Pr-B
3388,cg09524904,-0.00000848,0.00000287,-2.95760078,0.003338836,loss,ns,0.00000211,0.00000487,0.433150793,0.665206448,pos,ns,0.0000634,0.001427001,0.044412988,0.964603803,pos,ns,0.01565103,-0.000038,0.0000491,-0.775217328,0.438802183,neg,ns,0.041447982,Bcl6,Bcl6_Promoter,16,23988404,23988453,23988452,23988453,50,-,ATCAATAGATACACATAGAAAACTTGGAGCCAAAGCATTTGGCAAGAGCG,Promoter (<=1kb),16,23965052,23988852,23801,2,Bcl6-201,399,Bcl6-201;Gm37419-201,Bcl6;Gm37419,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,7,18,12053,ENSMUSG00000022508,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
16457,cg21214228,0.000000719,0.00000187,0.385253938,0.700313489,gain,ns,-0.00000137,0.00000317,-0.433123198,0.665226472,neg,ns,0.000579792,0.000928585,0.624381969,0.532836001,pos,ns,0.27340644,0.0000114,0.0000319,0.356383943,0.721795485,pos,ns,0.955525839,Ylpm1,Ylpm1_Exon,12,85030783,85030832,85030783,85030784,50,-,CGATGCAAGCTTAGACTCTGACCAAGGCCTTGGAGGGGTAATGGTTCTCA,"Exon (Ylpm1-201/Ylpm1, exon 5 of 21)",12,84996321,85070492,74172,1,Ylpm1-207,34462,Ylpm1-207;Ylpm1-201;Ylpm1-202;Ylpm1-203,Ylpm1;Ylpm1;Ylpm1;Ylpm1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,13,56531,ENSMUSG00000021244,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26386,cg02107949,0.0000938,0.00000826,11.35514295,3.21E-25,gain,yes,0.00000608,0.000014,0.433121619,0.665227618,pos,ns,0.011068757,0.004110079,2.693076196,0.007464751,pos,ns,2.126984671,0.0000328,0.000141345,0.232030372,0.81666752,pos,ns,0.205113166,Nkx2-2,Nkx2-2_Exon,2,147188300,147188349,147188300,147188301,50,+,CGGACAATGAGCGAAATGTAGACAAATGTCCCGCTCCCGTTGGAAGCCTT,"Exon (6430503K07Rik-201/6430503K07Rik-201, exon 3 of 3)",2,147186305,147194243,7939,2,Nkx2-2-202,5894,Nkx2-2-203;Nkx2-2-201;Nkx2-2-202;Nkx2-2-204,Nkx2-2;Nkx2-2;Nkx2-2;Nkx2-2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,15,30,18088,ENSMUSG00000027434,conserved gene but different region,2,147188041,147188404,364,*,364,26,0.585164835,0.836633663,0.071428571,2.81E-16,CpGisland,TRUE,U13,Hc-P
3962,cg14653209,-0.00000426,0.00000188,-2.267160607,0.024068834,loss,ns,-0.00000138,0.00000319,-0.433110558,0.665235645,neg,ns,-0.000912884,0.000935278,-0.976055875,0.329797816,neg,ns,0.481752225,-0.0000115,0.0000322,-0.358028004,0.720566017,neg,ns,0.965510409,Capn15,Capn15_threeUTR,17,25959626,25959675,25959674,25959675,50,+,GCTGTCCAGTCACTGAGGAAGGCCTGGGCTGCCTTGCGATGTGCCAGGCG,3' UTR,17,25958364,25985706,27343,2,Capn15-207,26031,Capn15-207;Capn15-204;Capn15-208;Capn15-205;Capn15-203;Capn15-201;Capn15-202;Capn15-206,Capn15;Capn15;Capn15;Capn15;Capn15;Capn15;Capn15;Capn15,0;0;0;0;0;0;26121;4085,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,1,50817,ENSMUSG00000037326,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26217,cg19976011,-0.00000256,0.00000197,-1.298066984,0.195229256,loss,ns,0.00000145,0.00000335,0.433110525,0.665235669,pos,ns,-0.000327196,0.000980551,-0.333686211,0.738841954,neg,ns,0.131448452,0.0000218,0.0000337,0.647535667,0.517764561,pos,ns,0.026591523,Hs2st1,Hs2st1_Exon,3,144569797,144569846,144569797,144569798,50,+,CGAAGGCCACCACCGCCAGCAGCTGCAACTTGGGCGGCATCATAATCCTG,Promoter (<=1kb),3,144429706,144570181,140476,2,Hs2st1-201,335,Hs2st1-201;Hs2st1-202;Hs2st1-203;Selenof-203;Selenof-201;Selenof-202;Selenof-206,Hs2st1;Hs2st1;Hs2st1;Selenof;Selenof;Selenof;Selenof,0;0;0;-458;-580;-847;-868,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,6,23908,ENSMUSG00000040151,conserved gene and region,3,144569789,144570495,707,*,707,84,0.710042433,0.959232459,0.118811881,9.67E-71,CpGisland,TRUE,U1,Pr-A
17916,cg06947307,0.00000363,0.00000403,0.899815791,0.36891673,gain,ns,0.00000297,0.00000685,0.433068523,0.665266148,pos,ns,-0.000468856,0.002006358,-0.233685261,0.815383572,neg,ns,0.088638043,0.0000436,0.000069,0.632071581,0.52780597,pos,ns,0.907618703,Irx5,Irx5_Intergenic_downstream,8,92449823,92449872,92449823,92449824,50,+,CGCTGTAAATACCCAGCGTCCGGGCCTTATGGCATGTGATCTGTAATAAA,Distal Intergenic,8,92357749,92361456,3708,1,Irx5-201,92074,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,11,30,54352,ENSMUSG00000031737,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15674,cg04370215,-0.0000022,0.00000129,-1.704040993,0.08937548,loss,ns,0.000000949,0.00000219,0.433065911,0.665268043,pos,ns,0.000432413,0.000641819,0.673731133,0.500984283,pos,ns,0.300175899,0.000000561,0.0000221,0.02540503,0.979748245,pos,ns,0.031615529,Nfyb,Nfyb_fiveUTR,10,82763992,82764041,82763992,82763993,50,+,CGAGACACAAACCTCCAATGCAGCCCTGGTTGGCTCCCGTCTCCAATCGG,Promoter (<=1kb),10,82748701,82764144,15444,2,Nfyb-204,103,Nfyb-204;Nfyb-206;Nfyb-201;Nfyb-205,Nfyb;Nfyb;Nfyb;Nfyb,0;0;-329;-346,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,3,18045,ENSMUSG00000020248,conserved gene but different region,10,82763363,82764321,959,*,959,132,0.740354536,1.016110001,0.137643379,1.24E-120,CpGisland,TRUE,U1,Pr-A
26447,cg21661665,0.000110673,0.0000148,7.491401018,7.16E-13,gain,yes,0.0000109,0.0000251,0.433049681,0.665279822,pos,ns,0.023940927,0.007352843,3.256009737,0.00125498,pos,ns,2.901363149,-0.000495424,0.000252864,-1.959252252,0.050979249,neg,ns,0.191490077,Foxa2,Foxa2_Exon,2,148044344,148044393,148044344,148044345,50,+,CGCTCAGCGTCAGCATCTTGTTGGGGCTCTGCTGGATGGCCATGGTGATG,"Exon (Foxa2-202/Foxa2, exon 2 of 2)",2,148042877,148045948,3072,2,Foxa2-202,1555,Foxa2-202;Foxa2-201;Foxa2-204;Foxa2-203,Foxa2;Foxa2;Foxa2;Foxa2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,25,15376,ENSMUSG00000037025,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
10618,cg22980730,-0.00000437,0.0000016,-2.727637872,0.006742536,loss,ns,0.00000118,0.00000272,0.432833934,0.665436394,pos,ns,0.000206497,0.00079814,0.258722308,0.796021207,pos,ns,0.099075362,0.00000906,0.0000274,0.330074603,0.741566535,pos,ns,0.053628293,1700123O20Rik,1700123O20Rik_fiveUTR,14,54686473,54686522,54686521,54686522,50,+,TTGAGCCGCTTGACCAGGGCACTCTTCTGCCCGCTCTTGGCTAGGCCTCG,Promoter (<=1kb),14,54686216,54690741,4526,1,1700123O20Rik-201,257,1700123O20Rik-201;1700123O20Rik-202;1700123O20Rik-204;1700123O20Rik-203;Acin1-201;Acin1-218;Acin1-203;Acin1-206;Acin1-212;Acin1-210,1700123O20Rik;1700123O20Rik;1700123O20Rik;1700123O20Rik;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1,0;0;0;-522;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,5,58248,ENSMUSG00000040822,mapped to different genes,14,54686230,54687055,826,*,826,78,0.633171913,0.949845201,0.094430993,3.48E-57,CpGisland,TRUE,U1,Pr-A
17890,cg02388378,-0.00000036,0.00000449,-0.080303603,0.93604761,loss,ns,-0.0000033,0.00000763,-0.432768445,0.665483923,neg,ns,-0.001696953,0.002233973,-0.759612092,0.448063741,neg,ns,0.348660199,0.0000782,0.0000768,1.017855598,0.309540298,pos,ns,0.061801101,Irx5,Irx5_Intron,8,92361803,92361852,92361851,92361852,50,+,GTCGTGTTTTATGCAAAGCAATCAGCTGGTGAACTTTGCTAATGAGTTCG,"Intron (Irx5-202/Irx5, intron 3 of 4)",8,92357625,92376286,18662,1,Irx5-202,4178,Irx5-202;Irx5-201,Irx5;Irx5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,30,54352,ENSMUSG00000031737,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
14965,cg16449458,-0.00000492,0.00000379,-1.296793602,0.195666609,loss,ns,-0.00000279,0.00000644,-0.432662716,0.66556066,neg,ns,-0.002208347,0.001887101,-1.170232847,0.242806133,neg,ns,0.614740349,0.00000827,0.0000649,0.127462012,0.898657378,pos,ns,0.934301043,Supt6,Supt6_Exon,11,78211789,78211838,78211837,78211838,50,+,GTGCTCACCTGGGTTTACCCCGGGGCTGGTATCCCAGTAGGAACTTGCCG,"Exon (Supt6-201/Supt6, exon 32 of 37)",11,78206746,78245987,39242,2,Supt6-201,34149,Supt6-201;Supt6-202,Supt6;Supt6,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,7,20926,ENSMUSG00000002052,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26254,cg11124950,-0.0000172,0.00000724,-2.380298639,0.017902833,loss,ns,0.00000532,0.0000123,0.432653752,0.665567166,pos,ns,-0.002608633,0.003602214,-0.724174887,0.469504531,neg,ns,0.328360212,0.00008,0.00012388,0.645514676,0.519071202,pos,ns,0.791660754,Amot,Amot_Intron,X,145498849,145498898,145498897,145498898,50,-,TCTGATGTCAGCAATCCCCTTCCCACAAATATTCCAAGTATGCACCACCG,"Intron (Amot-201/Amot, intron 1 of 11)",20,145446425,145505144,58720,2,Amot-201,6246,Amot-201;Amot-206,Amot;Amot,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,4,27494,ENSMUSG00000041688,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23948,cg06115556,-0.000002,0.0000107,-0.186662253,0.85204755,loss,ns,0.00000787,0.0000182,0.432584056,0.665617753,pos,ns,0.005705244,0.005328611,1.070681405,0.285145596,pos,ns,0.544933332,-0.000093,0.00018325,-0.507540761,0.612136334,neg,ns,0.847329437,Hectd4,Hectd4_Exon,5,121292748,121292797,121292748,121292749,50,-,CGCTATCTGATGGCAGTTCAGAATCACCTTCTCAGTAACACTATTTTGAT,"Exon (Hectd4-201/Hectd4, exon 17 of 76)",5,121220219,121368577,148359,1,Hectd4-201,72529,Hectd4-201;Hectd4-207;Hectd4-203;Hectd4-205,Hectd4;Hectd4;Hectd4;Hectd4,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,8,269700,ENSMUSG00000042744,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1788,cg26368124,-0.00000134,0.00000186,-0.719619692,0.472301346,loss,ns,-0.00000137,0.00000316,-0.432528878,0.665657804,neg,ns,-0.000104538,0.000925832,-0.112912252,0.910173206,neg,ns,0.040875954,0.000000455,0.0000318,0.014289293,0.988608374,pos,ns,0.952990512,Foxp2,Foxp2_Intron,6,15201764,15201813,15201764,15201765,50,+,CGCTGACTCTGTAAGTTGCTGGTGAATGTAAAAGTGACTGCAATTAACCT,"Intron (Foxp2-207/Foxp2, intron 4 of 18)",6,14901349,15441977,540629,1,Foxp2-207,300415,Foxp2-207;Foxp2-213;Foxp2-208;Foxp2-211;Foxp2-217;Foxp2-203;Foxp2-216;Foxp2-205;Foxp2-204;Foxp2-201;Foxp2-210;Foxp2-214;Foxp2-212;Foxp2-209;Foxp2-202,Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,38,65,114142,ENSMUSG00000029563,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15579,cg06443336,-0.000018,0.00000525,-3.419113582,0.000712304,loss,ns,-0.00000386,0.00000892,-0.432480541,0.66569289,neg,ns,-0.002091788,0.00261343,-0.800399398,0.424092386,neg,ns,0.372539524,-0.000101417,0.0000899,-1.128418234,0.260015855,neg,ns,0.914374557,Gm50297,Gm50297_Intergenic_downstream,18,81898194,81898243,81898194,81898195,50,-,CGAAATGAGATGAGATATACTGTAGCTTATGAGTTAATAACTGCATATAA,Distal Intergenic,18,82261062,82261262,201,2,Gm50297-201,363068,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,17,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U14,Hc-H
2814,cg13420767,-0.00000508,0.00000433,-1.172802688,0.241775343,loss,ns,-0.00000318,0.00000735,-0.432477,0.66569546,neg,ns,0.000678119,0.002154191,0.314790753,0.753132305,pos,ns,0.123128724,-0.0000972,0.0000741,-1.31261422,0.190283922,neg,ns,0.9184898,Pnisr,Pnisr_Exon,4,21874617,21874666,21874665,21874666,50,-,TCTCAAAGGTCTGGTAAGAAGGCAAGCCGCAAACACAAGTCTAAGTCCCG,"Exon (Pnisr-201/Pnisr, exon 11 of 12)",4,21847583,21876475,28893,1,Pnisr-201,27034,Pnisr-201;Pnisr-213;Pnisr-202;Pnisr-203;Pnisr-207;Pnisr-204,Pnisr;Pnisr;Pnisr;Pnisr;Pnisr;Pnisr,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,10,66625,ENSMUSG00000028248,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20800,cg14946449,-0.00000267,0.00000127,-2.100448457,0.036496976,loss,ns,0.000000935,0.00000216,0.432464504,0.66570453,pos,ns,0.001545858,0.000633384,2.440631623,0.015221199,pos,ns,1.81755114,-0.000049,0.0000218,-2.248211766,0.025265097,neg,ns,0.970755013,Gm12722,Gm12722_Intergenic_downstream,4,105357648,105357697,105357696,105357697,50,+,CGTGTCTTATCCAAGTTAAATATTTCCAGAAAATAAATGTCTAGACACCG,Distal Intergenic,4,105374454,105374946,493,2,Gm12722-201,17249,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,433742,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19790,cg13024380,0.00000279,0.00000611,0.45706131,0.647947098,gain,ns,-0.00000449,0.0000104,-0.432424652,0.665733458,neg,ns,-0.003467372,0.003040572,-1.140368355,0.255013135,neg,ns,0.59343745,-0.000183309,0.000104565,-1.753059649,0.080580199,neg,ns,0.795067298,Msl2,Msl2_Exon,9,101101818,101101867,101101866,101101867,50,-,TGTGGGCGTGCTACTCAAAATCCAAGTGTTCTTACATGCCGAGGCCAACG,"Exon (Msl2-201/Msl2, exon 2 of 2)",9,101074762,101104800,30039,1,Msl2-201,27056,Msl2-202;Msl2-201;Ppp2r3a-202;Ppp2r3a-201,Msl2;Msl2;Ppp2r3a;Ppp2r3a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,Exon,12,19,77853,ENSMUSG00000066415,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13757,cg21344610,-0.00000748,0.00000183,-4.086312632,0.0000559,loss,ns,0.00000134,0.00000311,0.4323712,0.665772258,pos,ns,-0.001459689,0.000910608,-1.602982367,0.109956917,neg,ns,0.958777446,0.0000341,0.0000313,1.089031791,0.276985738,pos,ns,0.961610922,Gm11235,Gm11235_Intergenic_upstream,4,72382815,72382864,72382863,72382864,50,-,TCTTGAAAGAGTGATTGCTTTTTCTGCTGCTGTGATGTTTGTCAAATTCG,Distal Intergenic,4,72542666,72542998,333,1,Gm11235-201,-159851,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,8,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20722,cg07449411,-0.0000105,0.00000269,-3.916356353,0.000110606,loss,ns,0.00000197,0.00000456,0.432214004,0.665886371,pos,ns,-0.001317707,0.001337337,-0.985321531,0.325234557,neg,ns,0.487803316,0.0000626,0.000046,1.361931523,0.174208342,pos,ns,0.946178271,Dicer1,Dicer1_Intergenic_downstream,12,104635035,104635084,104635083,104635084,50,+,AAAGATTGTTAGTCCTGACACTAGCCATGTACCTTGAGCTGACTGTTCCG,Distal Intergenic,12,104691443,104700502,9060,2,Dicer1-204,65418,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,12,192119,ENSMUSG00000041415,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20514,cg23036219,-0.0000106,0.00000243,-4.348993208,0.0000186,loss,ns,0.00000178,0.00000413,0.432154089,0.665929867,pos,ns,0.000680412,0.001209957,0.562343859,0.574288161,pos,ns,0.240870137,-0.000027,0.0000416,-0.65002579,0.516156964,neg,ns,0.936703858,Cbx5,Cbx5_threeUTR,15,103194478,103194527,103194478,103194479,50,+,CGATTAATACTGATGGCTCTTACCTAGGCTGTGATAATTAGGTTTTGATC,3' UTR,15,103191544,103239816,48273,2,Cbx5-202,45289,Cbx5-202;Cbx5-201;Cbx5-203,Cbx5;Cbx5;Cbx5,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,3,12419,ENSMUSG00000009575,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24394,cg21838477,-0.0000152,0.00000469,-3.24614034,0.001297809,loss,ns,-0.00000344,0.00000797,-0.432034785,0.666016479,neg,ns,-0.004644863,0.002334794,-1.989409812,0.047534474,neg,ns,1.322991308,0.0000756,0.0000803,0.941871231,0.346991966,pos,ns,0.821458685,Iffo1,Iffo1_threeUTR,6,125152584,125152633,125152632,125152633,50,-,CTGTAGTCTCTGCACTTGTCTCCCATTAAGGTCCCATCCATGGGGGGGCG,3' UTR,6,125145241,125161782,16542,1,Iffo1-202,7343,Iffo1-202;Iffo1-204;Iffo1-206;Iffo1-201;Iffo1-205;Iffo1-207;Iffo1-203;Iffo1-208;Iffo1-210;Iffo1-209,Iffo1;Iffo1;Iffo1;Iffo1;Iffo1;Iffo1;Iffo1;Iffo1;Iffo1;Iffo1,0;0;0;0;0;0;0;3577;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,3,320678,ENSMUSG00000038271,conserved gene and region,6,125152541,125152756,216,*,216,12,0.657407407,0.514285714,0.055555556,0.00000131,CpGisland,TRUE,NA,NRS
23887,cg18884271,0.00000227,0.00000141,1.611833688,0.108015734,gain,ns,-0.00000103,0.00000239,-0.431970246,0.666063336,neg,ns,0.000415281,0.000701013,0.592401369,0.554013694,pos,ns,0.2564795,-0.0000387,0.0000241,-1.607055865,0.109060145,neg,ns,0.966005766,Lemd3,Lemd3_threeUTR,10,120923513,120923562,120923561,120923562,50,-,CTAGTTATTATACACATTCCCATCTGTCTTGCAGGGAGGGATCTTGGTCG,3' UTR,10,120923413,120979332,55920,2,Lemd3-202,55770,Gm16166-201;Lemd3-202;Lemd3-201,Gm16166;Lemd3;Lemd3,-4624;0;55770,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,380664,ENSMUSG00000048661,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15742,cg17840695,-0.00000318,0.00000181,-1.762424661,0.078983001,loss,ns,-0.00000133,0.00000307,-0.431738864,0.666231334,neg,ns,-0.00111774,0.000899224,-1.243004362,0.214805533,neg,ns,0.667954535,-0.0000417,0.0000309,-1.347536583,0.178791501,neg,ns,0.021098687,Pcgf1,Pcgf1_fiveUTR,6,83078383,83078432,83078431,83078432,50,-,AAGATGGCGTCTCCTCAGGGGGGCCAGATTGCGATCGCGATGAGGCTTCG,Promoter (<=1kb),6,83078390,83080847,2458,1,Pcgf1-201,0,Pcgf1-205;Pcgf1-202;Pcgf1-201;Pcgf1-203;Pcgf1-207;Pcgf1-204;Pcgf1-208;Pcgf1-206,Pcgf1;Pcgf1;Pcgf1;Pcgf1;Pcgf1;Pcgf1;Pcgf1;Pcgf1,0;0;0;-198;-198;-259;-286;-1588,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,2,69837,ENSMUSG00000069678,conserved gene but different region,6,83077792,83078793,1002,*,1002,93,0.661676647,0.8567252,0.092814371,2.66E-67,CpGisland,TRUE,U1,Pr-A
10420,cg19499679,0.0000985,0.0000106,9.313626346,2.36E-18,gain,yes,-0.00000776,0.000018,-0.431614697,0.666321493,neg,ns,0.017657971,0.005264816,3.353957542,0.000895532,pos,ns,3.047918937,-0.000314972,0.000181057,-1.739631807,0.082916206,neg,ns,0.488030121,Prdm6,Prdm6_Intron,18,53480222,53480271,53480222,53480223,50,+,CGTACTCTTCTTGGAGCCTGGTTGAAGGCTGTTAACACAAAGCTTTTCAA,"Intron (Prdm6-201/Prdm6, intron 2 of 6)",18,53464516,53575857,111342,1,Prdm6-201,15706,Prdm6-201;Prdm6-203,Prdm6;Prdm6,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,16,225518,ENSMUSG00000069378,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22876,cg05097064,-0.0000538,0.000012,-4.501938377,0.00000954,loss,ns,-0.00000877,0.0000203,-0.431502205,0.66640318,neg,ns,0.003822699,0.005952905,0.642156951,0.521245864,pos,ns,0.282957378,-0.000233855,0.00020472,-1.142316915,0.254203823,neg,ns,0.604410639,Meis2,Meis2_Exon,2,116061549,116061598,116061549,116061550,50,-,CGCACTTCTCAAAGACCAGAGCTAACAGAGGAAACAACGGGTGCCTAACG,"Exon (Meis2-201/Meis2, exon 3 of 12)",2,115863064,116065047,201984,2,Meis2-201,3449,Meis2-201;Meis2-203;Meis2-205;Meis2-206;Meis2-204;Meis2-202;Meis2-213;Meis2-210;Meis2-209;Meis2-212,Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2,0;0;0;0;0;0;0;0;0;-2707,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,15,97,17536,ENSMUSG00000027210,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3624,cg18391771,0.0000873,0.0000084,10.3969597,6.44E-22,gain,yes,-0.00000616,0.0000143,-0.431490388,0.666411762,neg,ns,0.012853066,0.004180959,3.074190593,0.002298443,pos,ns,2.638566286,-0.000323326,0.000143783,-2.248709003,0.025233057,neg,ns,0.418243501,Gm47909,Gm47909_Intergenic_downstream,14,24826244,24826293,24826244,24826245,50,-,CGTGTTGGAAGATTTCATGCTAATGAAAGGGTTTCTTGATTAGGTTACGC,Distal Intergenic,14,25089939,25090406,468,2,Gm47909-201,264162,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,13,17,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22473,cg19968662,-0.000000444,0.00000357,-0.124316965,0.901144886,loss,ns,-0.00000262,0.00000606,-0.431422544,0.666461029,neg,ns,-0.003014337,0.001776734,-1.696560515,0.090783591,neg,ns,1.041992641,-0.000015,0.0000611,-0.245682202,0.806090826,neg,ns,0.904404045,Kif19a,Kif19a_Exon,11,114779670,114779719,114779670,114779671,50,-,CGAGGAGACCAGCAATGACATGGAGTATGAGGTCTCCATGTCCTACCTGG,"Exon (Kif19a-202/Kif19a, exon 5 of 12)",11,114765388,114786179,20792,1,Kif19a-202,14282,Kif19a-202;Kif19a-205;Kif19a-207;Kif19a-201;Kif19a-203,Kif19a;Kif19a;Kif19a;Kif19a;Kif19a,0;0;0;0;-4940,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,286942,ENSMUSG00000010021,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18861,cg22662557,0.0000169,0.00000331,5.088419452,0.000000627,gain,yes,-0.00000243,0.00000563,-0.431413504,0.666467594,neg,ns,0.006153953,0.001649718,3.730307281,0.000227385,pos,ns,3.643237286,-0.000180536,0.0000567,-3.182164587,0.001609993,neg,ns,0.058315994,E130114P18Rik,E130114P18Rik_Intron,4,97775218,97775267,97775218,97775219,50,-,CGGATGTGAAGGGCTTTGGTGCTGAACTTGGATCCAGCCCTTGCCTAGAG,"Intron (Nfia-208/Nfia, intron 1 of 3)",4,97568133,97778048,209916,2,E130114P18Rik-204,2781,E130114P18Rik-204;E130114P18Rik-205;Nfia-208;Nfia-202;Nfia-203;Nfia-205;Nfia-201;Nfia-204,E130114P18Rik;E130114P18Rik;Nfia;Nfia;Nfia;Nfia;Nfia;Nfia,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,24,319865,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
672,cg21577422,0.00000642,0.00000232,2.767609644,0.005986391,gain,ns,-0.0000017,0.00000394,-0.431245724,0.66658944,neg,ns,0.004023391,0.001154778,3.484125155,0.000564861,pos,ns,3.248058707,-0.0000431,0.0000397,-1.085639486,0.278482021,neg,ns,0.065004248,Gdnf,Gdnf_Promoter,15,7809950,7809999,7809998,7809999,50,-,AATGTGTGTTTAGGTCAGAAAGCGAATCAGAAAAGCCACTGGAGGGCACG,Promoter (<=1kb),15,7810846,7837575,26730,1,Gdnf-201,-896,Gdnf-201,Gdnf,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,3,14573,ENSMUSG00000022144,mapped to different genes,15,7809972,7811275,1304,*,1304,121,0.674846626,0.816366233,0.092791411,2.56E-87,CpGisland,TRUE,U13,Hc-P
7769,cg01925203,0.0000129,0.00000399,3.222477498,0.001406078,gain,ns,0.00000292,0.00000678,0.431231364,0.666599869,pos,ns,0.002984413,0.001985066,1.503433141,0.133745424,pos,ns,0.873721067,-0.000174468,0.0000683,-2.555706448,0.01107416,neg,ns,0.902755096,Arhgap15,Arhgap15_Intron,2,44241401,44241450,44241449,44241450,50,-,GCTATTGTTAACAGTTGACTGTTTAAAGCTGGCCTGCTAAGATGCTGTCG,"Intron (Arhgap15-203/Arhgap15, intron 11 of 14)",2,43748824,44395953,647130,1,Arhgap15-203,492577,Arhgap15-203;Arhgap15-202;Arhgap15-201,Arhgap15;Arhgap15;Arhgap15,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,72,78,76117,ENSMUSG00000049744,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8010,cg05575542,0.000112966,0.0000145,7.770106205,1.16E-13,gain,yes,-0.0000107,0.0000247,-0.431224216,0.66660506,neg,ns,0.029667985,0.007235992,4.100057877,0.0000528,pos,ns,4.277233083,-0.00071283,0.000248845,-2.864551141,0.004461079,neg,ns,0.309432649,Ebf1,Ebf1_Intron,11,44683132,44683181,44683132,44683133,50,-,CGATGGTACAGGCAAGATGGAGTTAATTCAATAAAATAAATATAAAATAC,"Intron (Ebf1-203/Ebf1, intron 6 of 15)",11,44617317,45004995,387679,1,Ebf1-203,65815,Ebf1-203;Ebf1-202;Ebf1-201,Ebf1;Ebf1;Ebf1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,80,13591,ENSMUSG00000057098,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
5302,cg00691401,-0.000000697,0.00000116,-0.603683369,0.546495646,loss,ns,0.000000846,0.00000196,0.43122174,0.666606858,pos,ns,0.000748859,0.000575052,1.302245864,0.193799048,pos,ns,0.712648361,-0.0000212,0.0000198,-1.071817205,0.284635847,neg,ns,0.966282028,Atxn7l1,Atxn7l1_Exon,12,33364451,33364500,33364499,33364500,50,-,GCTGTCACTGAGCAACATTGGGGCTGCCTGGGTGTCAACTCTGGAGAGCG,"Exon (Atxn7l1-212/Atxn7l1, exon 10 of 13)",12,33147754,33373030,225277,1,Atxn7l1-212,216697,Atxn7l1-212;Atxn7l1-204;Atxn7l1-202;Atxn7l1-213;Atxn7l1-205;Atxn7l1-209,Atxn7l1;Atxn7l1;Atxn7l1;Atxn7l1;Atxn7l1;Atxn7l1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,24,380753,ENSMUSG00000020564,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24072,cg01533729,0.0000614,0.00000522,11.76712869,1.13E-26,gain,yes,-0.00000382,0.00000886,-0.431042156,0.666737289,neg,ns,-0.002459455,0.002596152,-0.947346373,0.344200181,neg,ns,0.463188906,0.000234784,0.0000893,2.629702403,0.008972317,pos,ns,0.113279133,Zic5,Zic5_Intron,14,122450822,122450871,122450870,122450871,50,-,ATGAAACTATTAAACCCGGGTGGAGGTCAGGCTGGAGGCGCCCCAGAGCG,"Intron (Gm5089-201/Gm5089-201, intron 1 of 2)",14,122459193,122460021,829,2,Zic5-202,9199,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,26,65100,ENSMUSG00000041703,mapped to different genes,14,122450815,122451209,395,*,395,35,0.675949367,0.802752294,0.088607595,5.51E-25,CpGisland,TRUE,U3,Pr-B
16019,cg13158272,-0.0000441,0.0000217,-2.036876867,0.042511689,loss,ns,-0.0000159,0.0000368,-0.431032588,0.666744238,neg,ns,-0.0275125,0.010783319,-2.551394393,0.011209213,neg,ns,1.950424861,0.000225534,0.000370837,0.608174698,0.54351693,pos,ns,0.465986091,Elmsan1,Elmsan1_Promoter,12,84222849,84222898,84222849,84222850,50,-,CGTGAATCTATTAATTTAACAGGAACTAGGCTCAGCACATATATTCCTTG,Promoter (4-5kb),12,84149176,84218881,69706,2,Elmsan1-201,-4017,Elmsan1-201;Elmsan1-205,Elmsan1;Elmsan1,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,4,238317,ENSMUSG00000042507,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4668,cg22350339,0.00000944,0.00000277,3.406420735,0.000744994,gain,ns,-0.00000203,0.00000471,-0.430965388,0.666793047,neg,ns,-0.000773053,0.00137928,-0.560475297,0.575560113,neg,ns,0.239909311,-0.0000541,0.0000474,-1.141466876,0.254556656,neg,ns,0.88183428,Cacna1d,Cacna1d_threeUTR,14,30082490,30082539,30082490,30082491,50,-,CGGAAAAGACGGAAAAAGGTGATGGAGATTCTATTGCTCTCTTCAGAGTT,Promoter (<=1kb),14,30039939,30082758,42820,2,Cacna1d-212,219,Cacna1d-212;Cacna1d-202;Cacna1d-201;Cacna1d-208;Cacna1d-209;Cacna1d-214;Cacna1d-204;Cacna1d-207;Cacna1d-218;Cacna1d-216;Cacna1d-217;Cacna1d-210;Cacna1d-219,Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,13,26,12289,ENSMUSG00000015968,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26550,cg12051857,-0.0000303,0.00000957,-3.165055069,0.001704539,loss,ns,-0.00000701,0.0000163,-0.430959635,0.666797226,neg,ns,0.014879805,0.004764113,3.123310538,0.001957157,pos,ns,2.7083744,-0.000253556,0.000163837,-1.547609495,0.122736586,neg,ns,0.905590588,Casz1,Casz1_Intron,4,148912573,148912622,148912621,148912622,50,-,CCTTGCAGGGAAGGTGTTAACAAACAGCAGGTGATTAAACATGACAAGCG,"Intron (Casz1-201/Casz1, intron 4 of 15)",4,148804429,148945129,140701,1,Casz1-201,108144,Casz1-201;Casz1-202;Casz1-206,Casz1;Casz1;Casz1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,94,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8392,cg21296320,0.00000753,0.00000526,1.431024543,0.153430467,gain,ns,0.00000385,0.00000894,0.430873451,0.666859826,pos,ns,0.002641511,0.00261788,1.009026931,0.313748644,pos,ns,0.503418142,-0.000134954,0.00009,-1.499009196,0.134888882,neg,ns,0.86823437,Zeb2,Zeb2_Intron,2,45084493,45084542,45084493,45084494,50,+,CGCATTGACACGATAGACCGGAACAGCTCAGAAGAAGCTGTTATGGTCTA,"Intron (Zeb2-212/Zeb2, intron 3 of 10)",2,44983632,45117395,133764,2,Zeb2-212,32853,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17604,cg19576110,0.00000871,0.00000288,3.025684242,0.002688464,gain,ns,0.00000211,0.00000489,0.43079674,0.666915548,pos,ns,0.002744939,0.001432445,1.916261811,0.056251186,pos,ns,1.249868317,0.000028,0.0000493,0.569071707,0.569719545,pos,ns,0.054202777,Olig2,Olig2_Promoter,16,91223800,91223849,91223848,91223849,50,+,GTTTTAAATACATATTTAACGGATGGCTGCAGAGCCAGCTGGGAAACACG,Promoter (1-2kb),16,91225457,91228677,3221,1,Olig2-201,-1608,Olig2-201,Olig2,-1608,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,2,50913,ENSMUSG00000039830,conserved gene and region,16,91223715,91223974,260,*,260,16,0.530769231,0.892512336,0.061538462,2.90E-09,CpGisland,TRUE,U13,Hc-P
22933,cg09726978,-0.0000284,0.0000116,-2.439600079,0.015263884,loss,ns,-0.00000851,0.0000198,-0.430785,0.666924076,neg,ns,-0.009333593,0.005787821,-1.612626422,0.107843217,neg,ns,0.967207164,-0.000144346,0.000199043,-0.725202897,0.468874625,neg,ns,0.752560153,Gm13991,Gm13991_Intergenic_downstream,2,116299743,116299792,116299791,116299792,50,+,ATAATTTTCCTTCTTGCATGGTGTAATTTCATATAGCTCAAATGAACTCG,Distal Intergenic,2,116527843,116528490,648,2,Gm13991-201,228698,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,14,20,433464,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3729,cg12701446,0.0000131,0.00000207,6.342836581,7.97E-10,gain,yes,0.00000152,0.00000352,0.430684602,0.666997006,pos,ns,0.002847936,0.001031423,2.761172121,0.006102734,pos,ns,2.214475539,-0.0000173,0.0000355,-0.487383269,0.626331219,neg,ns,0.064426586,Pou2f2,Pou2f2_Promoter,7,25179447,25179496,25179447,25179448,50,-,CGGAGAGCTCTCTGCAATAGGCCGAGCCGGCTGCATTAAGCTTCTTGCAA,Promoter (<=1kb),7,25120618,25179726,59109,2,Pou2f2-208,230,Pou2f2-208,Pou2f2,0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,11,29,18987,ENSMUSG00000008496,conserved gene and region,7,25179353,25179528,176,*,176,22,0.6875,1.07436182,0.125,2.22E-19,CpGisland,TRUE,U3,Pr-B
20054,cg22285914,0.0000372,0.00000768,4.840810607,0.00000204,gain,ns,0.00000561,0.000013,0.43050227,0.667129463,pos,ns,0.013417,0.003820094,3.512217224,0.000510442,pos,ns,3.292053775,-0.000374611,0.000131373,-2.851509629,0.004643269,neg,ns,0.380188823,Sp7,Sp7_fiveUTR,15,102366463,102366512,102366463,102366464,50,-,CGAGAGAGGGAGGCAGAGGGTCCAAATTTCCTGCTCCATTTGCTGAGCTC,Promoter (<=1kb),15,102356606,102366513,9908,2,Sp7-201,1,Sp7-201;Sp7-202;Sp7-203,Sp7;Sp7;Sp7,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,10,170574,ENSMUSG00000060284,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
10684,cg20327494,-0.0000235,0.0000168,-1.396919339,0.163436997,loss,ns,0.0000123,0.0000286,0.430425551,0.667185199,pos,ns,0.010601674,0.008367729,1.266971487,0.2061165,pos,ns,0.68588724,-0.00029487,0.000287766,-1.024689625,0.306308581,neg,ns,0.410971856,Zfp462,Zfp462_Intron,4,54966237,54966286,54966237,54966238,50,+,CGAGCCAGCAGTTCTGTTACCACCGCTGTGACGCAGGAGATAATTCAGCT,"Intron (Zfp462-204/Zfp462, intron 1 of 2)",4,54945048,55008314,63267,1,Zfp462-204,21189,Zfp462-204;Zfp462-203,Zfp462;Zfp462,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,23,242466,ENSMUSG00000060206,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
414,cg06637963,0.00000791,0.0000029,2.733144909,0.006633475,gain,ns,0.00000212,0.00000492,0.430243447,0.667317505,pos,ns,0.001869024,0.00144103,1.297005043,0.195593938,pos,ns,0.70864461,-0.000104556,0.0000496,-2.109824414,0.035674672,neg,ns,0.039992641,Zeb1,Zeb1_fiveUTR,18,5591886,5591935,5591934,5591935,50,+,CATTTAGACACAAGCGAGAGGATCATGGCGGATGGCCCCAGGTGTAAGCG,Promoter (<=1kb),18,5591891,5766533,174643,1,Zeb1-202,0,Zeb1-212;Zeb1-201;Zeb1-204;Zeb1-202;Zeb1-209;Zeb1-206;Zeb1-208;Zeb1-205;Zeb1-211;Zeb1-207,Zeb1;Zeb1;Zeb1;Zeb1;Zeb1;Zeb1;Zeb1;Zeb1;Zeb1;Zeb1,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,7,21417,ENSMUSG00000024238,mapped to different genes,18,5591882,5592967,1086,*,1086,159,0.745856354,1.076353436,0.14640884,2.52E-150,CpGisland,TRUE,U1,Pr-A
5404,cg07652573,0.0000327,0.0000137,2.39511564,0.017208337,gain,ns,-0.00000999,0.0000232,-0.430240591,0.667319579,neg,ns,0.010160848,0.006804241,1.493311138,0.13637283,pos,ns,0.865272147,-0.000472525,0.000233997,-2.019363203,0.044309772,neg,ns,0.62555868,Rbpms,Rbpms_Exon,8,33806771,33806820,33806771,33806772,50,+,CGCTAACTCCGCTGGGTACAGAGGGTACGGGGCCCACACTTCAGGGCTAC,Promoter (<=1kb),8,33784064,33806799,22736,2,Rbpms-207,0,Rbpms-203;Rbpms-213;Rbpms-201;Rbpms-208;Rbpms-205;Rbpms-212;Rbpms-207;Rbpms-204;Rbpms-202;Rbpms-209;Rbpms-210;Rbpms-214,Rbpms;Rbpms;Rbpms;Rbpms;Rbpms;Rbpms;Rbpms;Rbpms;Rbpms;Rbpms;Rbpms;Rbpms,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,5,19663,ENSMUSG00000031586,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U5,En-Sd
7636,cg00903722,-0.00000704,0.00000164,-4.290825642,0.0000238,loss,ns,0.0000012,0.00000279,0.430097368,0.667423644,pos,ns,-0.000193787,0.000817011,-0.23718981,0.812666211,neg,ns,0.090087797,0.0000176,0.0000281,0.628172545,0.530353416,pos,ns,0.971060489,Zbtb20,Zbtb20_Intron,16,43525730,43525779,43525778,43525779,50,-,AGGTTCCAAAAGCAAATGCAAGAGGTTGCCGAATGCAGGGACATGTGGCG,"Intron (Zbtb20-211/Zbtb20, intron 4 of 4)",16,42907542,43569781,662240,1,Zbtb20-211,618188,Zbtb20-211;Zbtb20-217;Zbtb20-204;Zbtb20-215;Zbtb20-201;Zbtb20-203;Zbtb20-214;Zbtb20-213;Zbtb20-219;Zbtb20-216;Zbtb20-208;Zbtb20-207;Zbtb20-220;Zbtb20-206;Zbtb20-221;Zbtb20-202;Zbtb20-205,Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,98,56490,ENSMUSG00000022708,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4212,cg15992086,-0.0000641,0.00000912,-7.022521976,1.38E-11,loss,yes,0.00000666,0.0000155,0.429928595,0.667546282,pos,ns,0.013008297,0.0045405,2.864948107,0.004455637,pos,ns,2.351090224,-0.000147079,0.000156147,-0.941923084,0.346965458,neg,ns,0.877997627,Rxra,Rxra_Intergenic_upstream,2,27635643,27635692,27635643,27635644,50,+,CGTTTAATTAGTGTGTTTTGAAGGGGAAATGAAGGAAAATTATAACTCAT,Distal Intergenic,2,27676440,27741898,65459,1,Rxra-204,-40748,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,6,20181,ENSMUSG00000015846,mapped to different genes,2,27635587,27635745,159,*,159,10,0.452830189,1.230650155,0.062893082,0.00000467,CpGisland,TRUE,U11,Tr-P
24897,cg21502375,0.000000396,0.00000267,0.147936174,0.882489315,gain,ns,-0.00000195,0.00000454,-0.429901723,0.667565809,neg,ns,-0.001370429,0.001330995,-1.029627275,0.303987666,neg,ns,0.517144037,0.0000207,0.0000458,0.452286477,0.651378941,pos,ns,0.92548315,Plpp4,Plpp4_Exon,7,129316274,129316323,129316322,129316323,50,+,TCTTTCCTCACACCCCTGGCTGTTATTTGTGTGGTGAAAATTATCCGGCG,"Exon (Plpp4-201/Plpp4, exon 3 of 7)",7,129257031,129391412,134382,1,Plpp4-201,59243,Plpp4-201;Plpp4-204;Plpp4-202;Plpp4-203,Plpp4;Plpp4;Plpp4;Plpp4,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,6,381925,ENSMUSG00000070366,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26909,cg03615156,-0.0000512,0.00000936,-5.469604233,0.000000093,loss,yes,-0.00000684,0.0000159,-0.429857107,0.66759823,neg,ns,-0.014018597,0.004660403,-3.008022622,0.002844956,neg,ns,2.545924393,0.000140534,0.000160271,0.876853612,0.381245149,pos,ns,0.846238324,Prdm16,Prdm16_Intron,4,154568849,154568898,154568849,154568850,50,+,CGTATTGTACAATTAGATCAATTTGACAATTTCCATTATGGCTGATAAAA,"Intron (Prdm16-201/Prdm16, intron 1 of 16)",4,154316125,154636866,320742,2,Prdm16-201,67968,Prdm16-201;Prdm16-202;Prdm16-203;Prdm16-204;Prdm16-205;Prdm16-206;Prdm16-210;Prdm16-207;Prdm16-212,Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,32,70673,ENSMUSG00000039410,conserved gene and region,4,154568744,154568850,107,*,107,10,0.644859813,0.900673401,0.093457944,0.000000121,CpGisland,TRUE,NA,NRS
26632,cg03152095,-0.00000154,0.00000471,-0.326308225,0.744411345,loss,ns,0.00000344,0.00000801,0.429783862,0.667651458,pos,ns,0.006985124,0.002346511,2.976812458,0.003142076,pos,ns,2.502783285,-0.0001887,0.0000807,-2.338390893,0.020002418,neg,ns,0.915545735,Pex14,Pex14_Intron,4,149044762,149044811,149044762,149044763,50,-,CGGGAATTTGACAAAGTCCCGGCACACTTCAAACTTGCAAAAATATGAAC,"Intron (Pex14-201/Pex14, intron 2 of 8)",4,148960535,149099876,139342,2,Pex14-201,55065,Pex14-201;Pex14-202;Pex14-205;Pex14-203;Pex14-204,Pex14;Pex14;Pex14;Pex14;Pex14,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,41,48,56273,ENSMUSG00000028975,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11971,cg12757011,0.000067,0.00000617,10.85256342,1.80E-23,gain,yes,-0.00000451,0.0000105,-0.429768591,0.667662555,neg,ns,0.008780329,0.003072261,2.857937079,0.004552648,pos,ns,2.341735937,-0.0000169,0.000105655,-0.160326961,0.872727942,neg,ns,0.13085668,Tbr1,Tbr1_threeUTR,2,61812775,61812824,61812823,61812824,50,-,TGAAACTCTTCACCTTTAGGAGACCTGGGCAGTCCTGTCAGGCAGCAGCG,3' UTR,2,61804453,61814114,9662,1,Tbr1-201,8322,Tbr1-201;Tbr1-202;Tbr1-203,Tbr1;Tbr1;Tbr1,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,threeUTR,1,27,21375,ENSMUSG00000035033,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
11915,cg11263938,0.00000675,0.00000545,1.237455001,0.216854689,gain,ns,-0.00000398,0.00000926,-0.429684282,0.667723825,neg,ns,-0.003103604,0.002714268,-1.143440703,0.253737888,neg,ns,0.595614679,-0.0000866,0.0000933,-0.928170011,0.354041499,neg,ns,0.848348819,Tank,Tank_Intergenic_downstream,2,61662586,61662635,61662634,61662635,50,-,AGAGCCAATAAAGCTGTGAGTTTTTTCATTACACCAAATGCAGCTCTACG,Distal Intergenic,2,61643831,61649977,6147,1,Tank-211,18804,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,17,21353,ENSMUSG00000064289,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23517,cg15166827,-0.000022,0.00000654,-3.366456991,0.000857291,loss,ns,0.00000477,0.0000111,0.429600467,0.667784738,pos,ns,-0.001843892,0.003255057,-0.566469881,0.571484275,neg,ns,0.242995715,-0.0000177,0.000111941,-0.158354195,0.87428081,neg,ns,0.913483479,Cacna1c,Cacna1c_Exon,6,118742296,118742345,118742296,118742297,50,+,CGAAAAAGGATCCAAAGATGACCAGACTGACAAAATACACCCAGGGTAAC,"Exon (Cacna1c-207/Cacna1c, exon 8 of 47)",6,118587240,119196231,608992,2,Cacna1c-207,453886,Cacna1c-207;Cacna1c-205;Cacna1c-215;Cacna1c-224;Cacna1c-225;Cacna1c-226;Cacna1c-227;Cacna1c-202;Cacna1c-201;Cacna1c-203;Cacna1c-212;Cacna1c-216;Cacna1c-210;Cacna1c-206;Cacna1c-208;Cacna1c-213;Cacna1c-217;Cacna1c-219;Cacna1c-220;Cacna1c-209;Cacna1c-204;Cacna1c-214;Cacna1c-222,Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,13,15,12288,ENSMUSG00000051331,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25255,cg24328408,-0.00000152,0.00000106,-1.432965274,0.15287545,loss,ns,0.000000776,0.00000181,0.429464607,0.66788348,pos,ns,0.000259994,0.000529585,0.490938457,0.62381733,pos,ns,0.204942564,-0.0000157,0.0000182,-0.860249374,0.390316393,neg,ns,0.035856447,Cxxc4,Cxxc4_Exon,3,134240375,134240424,134240375,134240376,50,-,CGGCTTTAGGGGGCATCTCATTACCTCCAGGGGTCATCGTCATGACAGCC,"Exon (Cxxc4-203/Cxxc4, exon 3 of 4)",3,134236484,134259620,23137,1,Cxxc4-204,3891,Cxxc4-204;Cxxc4-203;Cxxc4-202;Cxxc4-201;Cxxc4-205,Cxxc4;Cxxc4;Cxxc4;Cxxc4;Cxxc4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,18,20,319478,ENSMUSG00000044365,mapped to different genes,3,134240265,134240649,385,*,385,21,0.587012987,0.63362069,0.054545455,5.57E-11,CpGisland,TRUE,U3,Pr-B
27485,cg17642487,0.0000647,0.0000103,6.267880225,1.22E-09,gain,yes,0.00000753,0.0000175,0.429416443,0.667918486,pos,ns,0.001464927,0.005140618,0.284971073,0.77585659,pos,ns,0.110218547,0.000310466,0.000176785,1.75617196,0.080046497,pos,ns,0.863886547,Pbx1,Pbx1_Intron,1,168357891,168357940,168357939,168357940,50,-,AGACGAATAAATGTTGATTAGTGTTGATTTTGTCCGACAAACGCCTGTCG,"Intron (Pbx1-208/Pbx1, intron 2 of 7)",1,168119364,168432270,312907,2,Pbx1-208,74330,Pbx1-208;Pbx1-205;Pbx1-206;Pbx1-201;Pbx1-202;Pbx1-204,Pbx1;Pbx1;Pbx1;Pbx1;Pbx1;Pbx1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,84,18514,ENSMUSG00000052534,conserved gene and region,1,168357767,168357940,174,*,174,14,0.568965517,1.0875,0.08045977,1.09E-09,CpGisland,TRUE,U9,En-Pp
9727,cg03850155,-0.000000905,0.00000571,-0.158467095,0.874191927,loss,ns,-0.00000417,0.00000971,-0.429391976,0.66793627,neg,ns,-0.006899793,0.002843417,-2.426584588,0.01581163,neg,ns,1.801023354,0.000139819,0.0000978,1.429867256,0.153762163,pos,ns,0.87588319,Rpl10-ps3,Rpl10-ps3_Promoter,9,50349484,50349533,50349484,50349485,50,+,CGGAATGCATTTTAATTATCGCTGCTTCTTATGTTGGTGAGCTGTTGCTG,Promoter (4-5kb),9,50344201,50344968,768,2,Rpl10-ps3-201,-4516,Rpl10-ps3-201,Rpl10-ps3,-4516,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,1,100043346,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19051,cg13032935,-0.0000452,0.0000111,-4.068161201,0.0000602,loss,ns,0.0000081,0.0000189,0.429369089,0.667952905,pos,ns,-0.013956104,0.005525696,-2.525673705,0.012045747,neg,ns,1.919166266,0.000445635,0.000190028,2.345096922,0.019652572,pos,ns,0.854815082,Cdk12,Cdk12_Intergenic_downstream,11,98284647,98284696,98284695,98284696,50,-,AGAAAAACAGATTATGCCCCTCGGTGCCACTCACTTATACTTGACATACG,Distal Intergenic,11,98263502,98268011,4510,1,Cdk12-204,21194,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,25,69131,ENSMUSG00000003119,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14190,cg09601175,0.0000782,0.00000742,10.53865455,2.13E-22,gain,yes,-0.00000541,0.0000126,-0.429349244,0.667967329,neg,ns,0.010425143,0.003692207,2.8235531,0.005056832,pos,ns,2.296121506,-0.000494365,0.000126975,-3.893415032,0.000121069,neg,ns,0.084605978,Hoxd3,Hoxd3_fiveUTR,2,74736504,74736553,74736504,74736505,50,-,CGTTTATTGGTAGTTGAACCTCAGCCTGGTTCCGTTCTACCGGGAATTCC,Promoter (<=1kb),2,74736515,74747915,11401,1,Hoxd3-202,0,Gm28230-201;Hoxd3-203;Hoxd3-205;Hoxd3-202;Hoxd3-201,Gm28230;Hoxd3;Hoxd3;Hoxd3;Hoxd3,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,8,24,15434,ENSMUSG00000079277,conserved gene but different region,2,74736406,74736588,183,*,183,19,0.639344262,1.025058962,0.103825137,3.98E-15,CpGisland,TRUE,U13,Hc-P
7098,cg26299486,-0.00000266,0.00000304,-0.875946678,0.381737243,loss,ns,0.00000221,0.00000516,0.429339104,0.6679747,pos,ns,0.000969792,0.001511228,0.641724675,0.521526174,pos,ns,0.28272389,-0.000113277,0.000052,-2.17962093,0.030037865,neg,ns,0.93825277,Zfpm2,Zfpm2_Intron,15,40961245,40961294,40961245,40961246,50,+,CGCCCTAAAGGAGTCCACATGCCAGCTCAGAGCTGCAGTGTAATTATGCT,"Intron (Zfpm2-201/Zfpm2, intron 5 of 7)",15,40655035,41104592,449558,1,Zfpm2-201,306210,Zfpm2-201;Zfpm2-203,Zfpm2;Zfpm2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,41,22762,ENSMUSG00000022306,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18931,cg07764907,0.0000724,0.0000151,4.806573712,0.0000024,gain,ns,0.000011,0.0000256,0.429290903,0.668009735,pos,ns,0.017644604,0.007496539,2.353699924,0.019211635,pos,ns,1.716435678,-0.000329156,0.000257805,-1.276760465,0.202642381,neg,ns,0.565704897,Dach1,Dach1_Intron,14,97960921,97960970,97960921,97960922,50,+,CGTATCCGTTTCATTAGTGCAGACTCTAATTCAAAACTGTTGAAAATGAA,"Intron (Dach1-201/Dach1, intron 3 of 10)",14,97786853,98169543,382691,2,Dach1-201,208573,Dach1-201;Dach1-202;Dach1-203,Dach1;Dach1;Dach1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,76,13134,ENSMUSG00000055639,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11153,cg05848491,-0.0000119,0.00000565,-2.111485803,0.035530631,loss,ns,0.00000412,0.00000959,0.429168595,0.668098638,pos,ns,-0.002246109,0.002810199,-0.799270299,0.424745668,neg,ns,0.371871041,0.000027,0.0000966,0.279802829,0.779815384,pos,ns,0.789502356,Fhl1,Fhl1_Exon,X,56790557,56790606,56790557,56790558,50,+,CGTTTCACCGCTGTGGAGGACCAGTATTACTGCGTGGATTGCTACAAGAA,"Exon (Fhl1-201/Fhl1, exon 6 of 7)",20,56731787,56793346,61560,1,Fhl1-201,58770,Fhl1-201;Fhl1-203;Fhl1-206;Fhl1-205;Fhl1-204;Fhl1-202;Fhl1-210;Fhl1-207;Fhl1-208;Fhl1-209,Fhl1;Fhl1;Fhl1;Fhl1;Fhl1;Fhl1;Fhl1;Fhl1;Fhl1;Fhl1,0;0;0;0;0;0;10738;0;2832;2559,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,11,14199,ENSMUSG00000023092,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6847,cg06154860,0.0000105,0.00000312,3.370469622,0.000845341,gain,ns,0.00000227,0.00000529,0.428901268,0.668292971,pos,ns,0.00147697,0.00155123,0.952128373,0.34177365,pos,ns,0.466261423,0.0000137,0.0000533,0.256775308,0.797522566,pos,ns,0.052157596,Etv1,Etv1_fiveUTR,12,38780523,38780572,38780523,38780524,50,+,CGTTAGGTGCAAAGCAAGTCTCGTTGATCGCCATTGCTAGTTTTGCACAC,5' UTR,12,38779380,38866249,86870,1,Etv1-203,1143,Etv1-203;Etv1-201;Etv1-211;Etv1-207;Etv1-206;Etv1-205;Etv1-212;Etv1-208;Etv1-210;Etv1-204;Etv1-202,Etv1;Etv1;Etv1;Etv1;Etv1;Etv1;Etv1;Etv1;Etv1;Etv1;Etv1,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,8,10,14009,ENSMUSG00000004151,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
14783,cg24515358,0.0000246,0.00000711,3.46418358,0.000606735,gain,ns,-0.00000518,0.0000121,-0.428724817,0.668421253,neg,ns,0.006768623,0.003537017,1.913653073,0.056585264,pos,ns,1.247296655,0.000194142,0.000121638,1.596065816,0.111492982,pos,ns,0.093928733,Gm11146,Gm11146_Intron,16,77644671,77644720,77644671,77644672,50,-,CGTTGGAGAGCAACTAAAATCTGACTGATTTCCATCTTTGGAGCATCAGA,"Intron (Mir99ahg-211/Mir99ahg-211, intron 5 of 6)",16,77588578,77602094,13517,2,Gm11146-201,-42626,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,21,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6843,cg03359322,-0.0000161,0.0000043,-3.733507014,0.000224638,loss,ns,-0.00000313,0.00000731,-0.428723272,0.668422377,neg,ns,-0.000865975,0.002140173,-0.404628443,0.686029691,neg,ns,0.163657088,-0.000231403,0.0000736,-3.144049859,0.001827624,neg,ns,0.918109053,Arhgap26,Arhgap26_Intron,18,38742739,38742788,38742787,38742788,50,-,GTTTCTTTGCTTAGCATGAAGTAGGCCTCAGAGGCCTGTGTGTGTCTTCG,"Intron (9630014M24Rik-201/9630014M24Rik-201, intron 3 of 3)",18,38676718,39110534,433817,1,Arhgap26-213,66021,Arhgap26-213,Arhgap26,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,6,71302,ENSMUSG00000036452,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13603,cg27151327,0.0000292,0.00000236,12.34146836,9.78E-29,gain,yes,-0.00000172,0.00000401,-0.428643435,0.668480423,neg,ns,0.005154736,0.00117564,4.384620656,0.0000159,pos,ns,4.797686838,-0.0000225,0.0000404,-0.557503875,0.577585545,neg,ns,0.042125626,Dlx1,Dlx1_fiveUTR,2,71528450,71528499,71528498,71528499,50,+,TAATTATCAACACTTTCTAATTACCTAACAAAGTAATTTGGGATTCACCG,Promoter (<=1kb),2,71528113,71533980,5868,1,Dlx1-201,337,Dlx1-201;Dlx1-202;Dlx1-205;Dlx1-204;Dlx1-203;Dlx1-206;Metap1d-201;Metap1d-205;Metap1d-203,Dlx1;Dlx1;Dlx1;Dlx1;Dlx1;Dlx1;Metap1d;Metap1d;Metap1d,0;0;0;0;0;-2281;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,12,36,13390,ENSMUSG00000041911,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19449,cg09711459,0.0000341,0.00000707,4.817124797,0.00000228,gain,ns,-0.00000515,0.000012,-0.42856604,0.668536696,neg,ns,0.01002893,0.003520231,2.848940945,0.004679942,pos,ns,2.329759528,-0.000293897,0.00012106,-2.427691813,0.015764367,neg,ns,0.633770607,Gm12689,Gm12689_Intergenic_downstream,4,99333539,99333588,99333539,99333540,50,+,CGACAGTTTTGGTCAATAAACAGGTTTAGTGAGACAAAATCTTTTTGTCT,Distal Intergenic,4,99295900,99297258,1359,1,Gm12689-201,37639,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,12,26,100137011,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15830,cg03466638,0.000015,0.00000568,2.631548245,0.008924803,gain,ns,-0.00000414,0.00000965,-0.428514547,0.668574136,neg,ns,-0.000646815,0.002827708,-0.228741649,0.819220545,neg,ns,0.086599165,0.0001814,0.0000972,1.865398642,0.063070048,pos,ns,0.817021854,Mef2c,Mef2c_Exon,13,83625318,83625367,83625318,83625319,50,+,CGATTCCGTAGGTCACAGCCCTGAGTCTGAGGACAAGTACAGGAAAATTA,"Exon (Mef2c-228/Mef2c, exon 5 of 11)",13,83504034,83663343,159310,1,Mef2c-218,121284,Mef2c-218;Mef2c-228;Mef2c-201;Mef2c-202;Mef2c-207;Mef2c-231;Mef2c-222;Mef2c-223;Mef2c-227;Mef2c-217;Mef2c-213;Mef2c-214;Mef2c-215;Mef2c-226;Mef2c-216;Mef2c-208;Mef2c-206;Mef2c-212;Mef2c-203;Mef2c-205;Mef2c-224;Mef2c-204;Mef2c-219;Mef2c-225;Mef2c-230,Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,41,17260,ENSMUSG00000005583,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17103,cg22987176,0.00000457,0.00000881,0.518956338,0.604161458,gain,ns,0.00000642,0.000015,0.428505057,0.668581036,pos,ns,0.006743966,0.004386629,1.537391554,0.125217479,pos,ns,0.902335045,-0.0000346,0.000150856,-0.22939443,0.818713639,neg,ns,0.867129779,Msi2,Msi2_Intron,11,88424434,88424483,88424434,88424435,50,+,CGCAGTGGTAAATTCACCAAATTAAATCGCTAGACAACTGGCTCAGATCA,"Intron (Msi2-203/Msi2, intron 7 of 13)",11,88339382,88718229,378848,2,Msi2-203,293746,Msi2-203;Msi2-201;Msi2-207,Msi2;Msi2;Msi2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,21,36,76626,ENSMUSG00000069769,conserved gene and region,11,88424434,88424604,171,*,171,11,0.614035088,0.693072955,0.064327485,0.00000103,CpGisland,TRUE,U11,Tr-P
19666,cg03278971,-0.0000455,0.000011,-4.145492455,0.0000438,loss,ns,0.00000799,0.0000186,0.428467701,0.668608198,pos,ns,0.019696599,0.005463057,3.605416831,0.00036304,pos,ns,3.440045831,-0.001090576,0.000187874,-5.804824602,1.59E-08,neg,yes,0.680377987,Eda,Eda_Exon,X,100395109,100395158,100395157,100395158,50,+,TACTGGTGGACGGCACCTACTTCATCTATAGTCAGGTAGAAGTGAGTACG,"Exon (Eda-208/Eda, exon 6 of 7)",20,99975606,100400759,425154,1,Eda-208,419503,Eda-208;Eda-209;Eda-202;Eda-203;Eda-206;Eda-205;Eda-207;Eda-204;Eda-201;Eda-212;Eda-210,Eda;Eda;Eda;Eda;Eda;Eda;Eda;Eda;Eda;Eda;Eda,0;0;0;0;0;0;0;0;0;9966;7854,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,9,13607,ENSMUSG00000059327,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17460,cg23152600,0.00000246,0.00000416,0.592171103,0.554167666,gain,ns,0.00000303,0.00000707,0.428237754,0.668775407,pos,ns,-0.000604551,0.002070677,-0.291958317,0.770513779,neg,ns,0.11321959,-0.0000567,0.0000712,-0.796080029,0.426594706,neg,ns,0.86441224,Nrxn3,Nrxn3_threeUTR,12,90332045,90332094,90332093,90332094,50,+,CTAGACAGCACCAAACTGAAGAGCCCACTAATTACTTCCCCCATGTTCCG,3' UTR,12,88722986,90332878,1609893,1,Nrxn3-213,1609059,Nrxn3-213;Nrxn3-208;Nrxn3-205;Nrxn3-201;Nrxn3-210;Nrxn3-214;Nrxn3-203;Nrxn3-202,Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,14,39,18191,ENSMUSG00000066392,conserved gene and region,12,90332093,90332366,274,*,274,16,0.591240876,0.669108669,0.058394161,6.19E-09,CpGisland,TRUE,NA,NRS
4048,cg07934123,-0.000032,0.0000104,-3.086253823,0.002209894,loss,ns,0.00000754,0.0000176,0.428223102,0.668786061,pos,ns,-0.002534118,0.005160523,-0.491058404,0.623732592,neg,ns,0.205001562,0.00000226,0.00017747,0.012713939,0.989864196,pos,ns,0.818923936,Gm45647,Gm45647_Intergenic_upstream,8,26661144,26661193,26661144,26661145,50,-,CGAAATTCATTGTTACTGCAGTTAATGGCCAGTTTATTAGAGCGTTAACC,Distal Intergenic,8,26780315,26780509,195,1,Gm45647-201,-119171,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,46,62,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25951,cg17334876,0.00000097,0.00000236,0.410751099,0.681538825,gain,ns,-0.00000172,0.00000401,-0.428179865,0.668817503,neg,ns,-0.002583221,0.001175352,-2.197827381,0.028700603,neg,ns,1.54210898,0.000042,0.0000404,1.039488205,0.299387803,pos,ns,0.950622727,Spen,Spen_Exon,4,141522173,141522222,141522221,141522222,50,-,ACTACGAGATGCTATGGAAACTGTATCATCCAATCCCCGAGCAGCACTCG,"Exon (Spen-201/Spen, exon 2 of 15)",4,141467890,141538449,70560,2,Spen-201,16227,Spen-201;Spen-202;Spen-205,Spen;Spen;Spen,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,17,19,56381,ENSMUSG00000040761,conserved gene and region,4,141522177,141522281,105,*,105,9,0.552380952,1.125,0.085714286,0.00000139,CpGisland,TRUE,U10,Tr-S
27035,cg05389472,0.0000266,0.00000425,6.243775702,1.40E-09,gain,yes,0.00000309,0.00000723,0.428161047,0.668831188,pos,ns,0.003301763,0.002117337,1.559394215,0.119923377,pos,ns,0.921096149,-0.0000844,0.0000728,-1.159682777,0.247070398,neg,ns,0.818598039,Dlgap4,Dlgap4_fiveUTR,2,156748306,156748355,156748306,156748307,50,-,CGTTGCTGTCGTTGTCCTTCAATAAGGTTGACTGCATTCAGCCAGTGCCA,5' UTR,2,156613705,156764361,150657,1,Dlgap4-205,134601,Dlgap4-205;Dlgap4-212;Dlgap4-206;Dlgap4-202;Dlgap4-210;Dlgap4-209;Dlgap4-204;Dlgap4-208;Dlgap4-211;Dlgap4-214;Dlgap4-213;Dlgap4-201;Dlgap4-203,Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,10,17,228836,ENSMUSG00000061689,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9230,cg21576900,0.00000152,0.00000191,0.800410418,0.424086014,gain,ns,-0.00000139,0.00000324,-0.428128445,0.668854897,neg,ns,-0.000599881,0.000948171,-0.632671898,0.527414309,neg,ns,0.277848092,0.0000166,0.0000326,0.509674878,0.610641895,pos,ns,0.952116459,Cadm1,Cadm1_Exon,9,47799400,47799449,47799448,47799449,50,-,CATGTACACTGTGACCAGTCAGCTGATGCTGAAGGTGCACAAGGAGGACG,"Exon (Cadm1-204/Cadm1, exon 5 of 10)",9,47530173,47853385,323213,1,Cadm1-204,269227,Cadm1-204;Cadm1-209;Cadm1-206;Cadm1-202;Cadm1-203;Cadm1-205;Cadm1-211;Cadm1-208;Cadm1-201,Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,13,77,54725,ENSMUSG00000032076,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8141,cg24501398,-0.000142705,0.0000131,-10.89512171,1.28E-23,loss,yes,0.00000953,0.0000223,0.428107858,0.668869869,pos,ns,0.064249536,0.006519026,9.855695651,4.12E-20,pos,yes,19.38559607,-0.002092338,0.000224189,-9.332931052,2.05E-18,neg,yes,0.493571846,Jarid2,Jarid2_Intron,13,44795971,44796020,44795971,44795972,50,+,CGTGCTTGTTTTAATTATTTTCTACTTGTGTGGCCAGGAGGTTATTTGGT,"Intron (Jarid2-212/Jarid2, intron 2 of 3)",13,44729535,44848340,118806,1,Jarid2-212,66436,Jarid2-212;Jarid2-204;Jarid2-210;Jarid2-201;Jarid2-209;Jarid2-203;Jarid2-208;Jarid2-213;Jarid2-215;Jarid2-216;Jarid2-206;Jarid2-205;Jarid2-202,Jarid2;Jarid2;Jarid2;Jarid2;Jarid2;Jarid2;Jarid2;Jarid2;Jarid2;Jarid2;Jarid2;Jarid2;Jarid2,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,21,16468,ENSMUSG00000038518,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24555,cg03833486,-0.00000108,0.00000336,-0.321874699,0.747764557,loss,ns,0.00000244,0.0000057,0.428003495,0.668945767,pos,ns,-0.000284238,0.001669874,-0.170214997,0.86495209,neg,ns,0.063007947,-0.0000467,0.0000574,-0.812819471,0.416945354,neg,ns,0.917319462,Ank2,Ank2_Exon,3,126963374,126963423,126963422,126963423,50,-,CACTCCTACCCAAGGAATTTGGTTCCAGGAGGCCCCAGCTGAAGAATGCG,"Exon (Ank2-207/Ank2, exon 28 of 46)",3,126921612,126998462,76851,2,Ank2-201,35039,Ank2-201;Ank2-208;Ank2-207;Ank2-222;Ank2-218;Ank2-220;Ank2-227,Ank2;Ank2;Ank2;Ank2;Ank2;Ank2;Ank2,0;0;0;0;0;0;12731,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,7,109676,ENSMUSG00000032826,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12960,cg12559355,0.0000034,0.00000329,1.030790347,0.303442683,gain,ns,0.00000239,0.0000056,0.428002232,0.668946686,pos,ns,0.001500968,0.001639347,0.915589267,0.360594022,pos,ns,0.442981477,-0.0000568,0.0000564,-1.00701456,0.314713147,neg,ns,0.917975316,Brinp1,Brinp1_Exon,4,68762652,68762701,68762652,68762653,50,-,CGCATGGACATGCCGATCACCATGTGGATGAAGTCCATGCGGTTCTTGTT,"Exon (Brinp1-201/Brinp1, exon 8 of 8)",4,68761514,68954397,192884,2,Brinp1-201,191696,Brinp1-201,Brinp1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,7,56710,ENSMUSG00000028351,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4763,cg20225264,0.00000298,0.00000112,2.668166607,0.008027734,gain,ns,-0.000000811,0.0000019,-0.427974508,0.668966848,neg,ns,-0.001204891,0.000555466,-2.169155733,0.030830628,neg,ns,1.511017629,0.0000249,0.0000191,1.303983867,0.193206504,pos,ns,0.031632167,Ier5l,Ier5l_Exon,2,30473954,30474003,30474002,30474003,50,-,TGTGGATCTTGCGCAGGGAGATGCTGATCAGGCTCTGGGCGTCCAGGGCG,Promoter (<=1kb),2,30471537,30474219,2683,2,Ier5l-201,216,Ier5l-201,Ier5l,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,13,72500,ENSMUSG00000089762,conserved gene and region,2,30473689,30474742,1054,*,1054,111,0.680265655,0.91031746,0.105313093,9.07E-87,CpGisland,TRUE,U3,Pr-B
16339,cg03462301,0.0000165,0.0000024,6.868044999,3.57E-11,gain,yes,-0.00000174,0.00000407,-0.427953277,0.668982289,neg,ns,0.002488918,0.001193351,2.085654834,0.03782742,pos,ns,1.422193282,-0.0000716,0.000041,-1.744323683,0.082093782,neg,ns,0.03703393,Rfx4,Rfx4_fiveUTR,10,84756123,84756172,84756171,84756172,50,+,TCCTATAAAATGATGCTTTTTCCCATGAAACATCCGCAAACATTTTGACG,Promoter (<=1kb),10,84756062,84906144,150083,1,Rfx4-202,61,Rfx4-202,Rfx4,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,7,13,71137,ENSMUSG00000020037,mapped to different genes,10,84756044,84756276,233,*,233,17,0.557939914,1.02510352,0.072961373,5.60E-11,CpGisland,TRUE,U13,Hc-P
8194,cg25024780,-0.00000928,0.00000464,-2.000232671,0.046347146,loss,ns,0.00000337,0.00000788,0.427937993,0.668993405,pos,ns,-0.000228071,0.002308534,-0.098794725,0.921365108,neg,ns,0.035568238,0.0000642,0.0000794,0.809029498,0.419118662,pos,ns,0.902081362,Supt3,Supt3_Intron,17,44842456,44842505,44842456,44842457,50,+,CGAGGTCAAAAATAGATATAGAGTAAACCAACCCCAAAAGTCAATTACAG,"Intron (Supt3-201/Supt3, intron 2 of 11)",17,44777152,45119290,342139,1,Supt3-201,65304,Supt3-201;Supt3-204;Supt3-202;Supt3-203,Supt3;Supt3;Supt3;Supt3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,5,109115,ENSMUSG00000038954,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1423,cg17609877,-0.00000848,0.00000342,-2.480003388,0.013668976,loss,ns,-0.00000249,0.00000581,-0.427931102,0.668998417,neg,ns,-0.001604476,0.00170219,-0.942595463,0.34662185,neg,ns,0.460144065,-0.0000468,0.0000585,-0.799393949,0.424674097,neg,ns,0.94813043,Sulf1,Sulf1_Exon,1,12805188,12805237,12805236,12805237,50,+,GGAAAATACCTCAATGAATATAATGGCAGCTACATCCCCCCTGGGTGGCG,"Exon (Sulf1-202/Sulf1, exon 6 of 22)",1,12692277,12861192,168916,1,Sulf1-202,112911,Sulf1-202;Sulf1-203;Sulf1-205;Sulf1-208;Sulf1-201,Sulf1;Sulf1;Sulf1;Sulf1;Sulf1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,5,240725,ENSMUSG00000016918,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6114,cg06897198,0.000117366,0.0000169,6.946657918,2.21E-11,gain,yes,-0.0000123,0.0000287,-0.427907035,0.669015921,neg,ns,0.028390495,0.008408978,3.376212415,0.000828509,pos,ns,3.081702986,-0.000672152,0.000289184,-2.324305496,0.020755066,neg,ns,0.339369205,Rpl17-ps9,Rpl17-ps9_Intergenic_upstream,7,36090840,36090889,36090840,36090841,50,+,CGTTTGTGGTTCGTCTGTAAACGCAAACACCTGTATCCAGTCAAGCTATG,Distal Intergenic,7,36118274,36118828,555,1,Rpl17-ps9-201,-27385,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,14,22,100043872,NA,mapped to different genes,7,36090633,36090919,287,*,287,15,0.49825784,0.843125734,0.052264808,8.91E-08,CpGisland,TRUE,U15,NS
19868,cg15956104,0.00011165,0.0000135,8.260149571,4.27E-15,gain,yes,-0.00000983,0.000023,-0.427863858,0.669047324,neg,ns,-0.000512733,0.006727386,-0.076215745,0.93929662,neg,ns,0.027197241,0.0000946,0.000231354,0.408763301,0.682995609,pos,ns,0.49385981,Gjb1,Gjb1_Intron,X,101383542,101383591,101383590,101383591,50,-,GATGGACCGGGCGGGCACAGAACAGGTGGGTGCAGGCTGGGTGTCCGGCG,"Intron (Gjb1-202/Gjb1, intron 1 of 1)",20,101376378,101385629,9252,1,Gjb1-202,7164,Gjb1-202;Gjb1-201;Gjb1-203,Gjb1;Gjb1;Gjb1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,3,14618,ENSMUSG00000047797,conserved gene and region,X,101383532,101383670,139,*,139,10,0.625899281,0.876418663,0.071942446,0.00000141,CpGisland,TRUE,NA,NRS
13210,cg18541520,0.0000244,0.00000562,4.341712106,0.0000192,gain,ns,0.00000409,0.00000955,0.427730882,0.669144042,pos,ns,0.003638486,0.002797977,1.300398887,0.194430214,pos,ns,0.711236247,-0.0000467,0.0000962,-0.485833746,0.627428262,neg,ns,0.123339648,Foxb1,Foxb1_Promoter,9,69766335,69766384,69766335,69766336,50,-,CGCTCATTTGTACAAGCAGAACAAAGGTTGGACTAAGCCAAATTGCATTG,Promoter (5-6kb),9,69757710,69760940,3231,2,Foxb1-201,-5444,NA,NA,NA,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,8,21,64290,ENSMUSG00000059246,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
22696,cg04713622,-0.00000243,0.00000196,-1.238644454,0.216414286,loss,ns,0.00000143,0.00000333,0.427637486,0.669211975,pos,ns,-0.001131246,0.000976518,-1.158448548,0.247572687,neg,ns,0.606297269,0.0000513,0.0000336,1.526469551,0.127912567,pos,ns,0.947410268,BC052040,BC052040_Intron,2,115725774,115725823,115725774,115725775,50,+,CGAGTTTTTCAAGCCTCTCAGTAAACTGTCATGCCTAGACAAGACTGTGC,"Intron (BC052040-203/BC052040, intron 10 of 10)",2,115581716,115778768,197053,1,BC052040-203,144058,BC052040-203;BC052040-201,BC052040;BC052040,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,37,49,399568,ENSMUSG00000040282,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17710,cg17673775,-0.000000387,0.00000599,-0.064610175,0.948526026,loss,ns,0.00000435,0.0000102,0.427534347,0.669286998,pos,ns,-0.001268935,0.00298304,-0.425383149,0.670852532,neg,ns,0.173372937,0.0000613,0.000102587,0.597392187,0.550681668,pos,ns,0.082962904,Zic4,Zic4_Intron,9,91406047,91406096,91406095,91406096,50,-,TAGCACATACTGGGACTGAACAGTCCTTGACCTTTGCCTTTATGTTTGCG,"Intron (Gm29478-201/Gm29478-201, intron 1 of 2)",9,91382410,91388044,5635,1,Zic4-202,23686,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,55,22774,ENSMUSG00000036972,conserved gene but different region,9,91405929,91406096,168,*,168,12,0.553571429,0.957264957,0.071428571,8.86E-08,CpGisland,TRUE,U13,Hc-P
14292,cg06678857,0.0000978,0.0000125,7.82583929,8.02E-14,gain,yes,-0.00000907,0.0000212,-0.427492532,0.669317415,neg,ns,0.001070832,0.006218551,0.172199632,0.86339295,pos,ns,0.063791502,0.000210296,0.000213855,0.983355632,0.32619928,pos,ns,0.356860207,Gsx2,Gsx2_Intergenic_downstream,5,75084523,75084572,75084571,75084572,50,+,TAGACTTTTCGATACATTCCTAATTGACTGAGGGGCAGGTGAAGCTCCCG,Distal Intergenic,5,75075602,75077625,2024,1,Gsx2-202,8921,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,10,14843,ENSMUSG00000035946,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
3661,cg27492283,0.000097,0.0000194,5.008574744,0.000000922,gain,yes,-0.0000141,0.0000329,-0.427422658,0.669368244,neg,ns,0.022661547,0.009634583,2.352104549,0.019292742,pos,ns,1.71460605,-0.000668587,0.000331333,-2.017872284,0.044465777,neg,ns,0.455049344,Erfl,Erfl_Promoter,7,24951285,24951334,24951333,24951334,50,-,CCGGCGGAGGCGACAGATTGAGCGATGAGACGCATTACGCACTTAATCCG,Promoter (6-7kb),7,24927445,24944494,17050,2,Erfl-201,-6840,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,29,36,,NA,mapped to different genes,7,24951274,24951467,194,*,194,18,0.567010309,1.164,0.092783505,1.92E-13,CpGisland,TRUE,U13,Hc-P
9408,cg20591925,0.0000366,0.00000579,6.32376349,8.90E-10,gain,yes,-0.0000042,0.00000983,-0.427413782,0.669374701,neg,ns,0.00743477,0.002880078,2.581447359,0.010297751,pos,ns,1.987257609,-0.00013064,0.000099,-1.318987344,0.188146819,neg,ns,0.131527515,Otx2,Otx2_Exon,14,48668795,48668844,48668795,48668796,50,+,CGCTGCCTTTAATTTGGGGACCTATGTTAATGAAGTTGGTAATTAATTCG,"Exon (Otx2os1-207/Otx2os1-207, exon 1 of 3)",14,48657851,48673819,15969,2,Otx2-210,4975,Otx2-209;Otx2-201;Otx2-210;Otx2-202;Otx2-208;Otx2-207;Otx2-205;Otx2-203;Otx2-211,Otx2;Otx2;Otx2;Otx2;Otx2;Otx2;Otx2;Otx2;Otx2,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,15,18424,ENSMUSG00000021848,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
27704,cg12663593,0.0000236,0.0000128,1.845166614,0.065966936,gain,ns,0.00000927,0.0000217,0.427366045,0.669409428,pos,ns,0.048033472,0.006352904,7.560869062,4.57E-13,pos,yes,12.34023281,-0.000788176,0.000218476,-3.60761312,0.000360105,neg,ns,0.675998887,Zbtb18,Zbtb18_Exon,1,177447800,177447849,177447800,177447801,50,+,CGGCAGATGTTGACTGTGTGCTGGACCTGTCTGTCAAGTCCAGCCTTTCA,"Exon (Zbtb18-202/Zbtb18, exon 2 of 2)",1,177444295,177450764,6470,1,Zbtb18-202,3505,Zbtb18-209;Zbtb18-211;Zbtb18-208;Zbtb18-203;Zbtb18-202;Zbtb18-204;Zbtb18-206;Zbtb18-210;Zbtb18-205;Zbtb18-212;Zbtb18-207;Zbtb18-201,Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,22,30928,ENSMUSG00000063659,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8331,cg16588310,-0.0000638,0.0000115,-5.56081152,0.000000058,loss,yes,-0.00000833,0.0000195,-0.427206603,0.66952542,neg,ns,-0.010106951,0.005713346,-1.769007418,0.077875877,neg,ns,1.108597051,0.000587141,0.000196481,2.988274199,0.003029806,pos,ns,0.824417413,Zeb2,Zeb2_Intron,2,45024332,45024381,45024380,45024381,50,+,TCCGCTAAGTTATCAACTGAGCTATCTCAAGTGGCTCTTGCCAGCTATCG,"Intron (Zeb2-212/Zeb2, intron 3 of 10)",2,44983632,45117395,133764,2,Zeb2-212,93014,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-227;Zeb2-216;Zeb2-229;Zeb2-218;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27677,cg12236455,-0.0000201,0.00000724,-2.777976622,0.005803248,loss,ns,0.00000525,0.0000123,0.427200463,0.669529888,pos,ns,-0.009353851,0.00360348,-2.595782679,0.009886801,neg,ns,2.004944222,0.000356067,0.000123923,2.873280665,0.00434279,pos,ns,0.891065862,Sdccag8,Sdccag8_Intron,1,176999255,176999304,176999303,176999304,50,+,TTCAGTTACCGTGGCAACCAGCAGATGGGGTTCTTTGACAAGGGTCAGCG,"Intron (Sdccag8-201/Sdccag8, intron 16 of 17)",1,176814660,177020437,205778,1,Sdccag8-201,184595,Sdccag8-201;Sdccag8-203;Sdccag8-205,Sdccag8;Sdccag8;Sdccag8,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,20,76816,ENSMUSG00000026504,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5990,cg27263015,0.00000095,0.00000286,0.331850566,0.740226347,gain,ns,0.00000208,0.00000486,0.427011123,0.669667641,pos,ns,-0.002955639,0.001424284,-2.075174369,0.038794865,neg,ns,1.411225761,0.0000659,0.000049,1.345827637,0.179341536,pos,ns,0.887343842,Dab2ip,Dab2ip_threeUTR,2,35719899,35719948,35719947,35719948,50,+,GACTTGTTTTTTGTCACAAGGTCCTCCGGGGTCCAGCCCTCACCTGCCCG,3' UTR,2,35558266,35730994,172729,1,Dab2ip-205,161633,Dab2ip-205;Dab2ip-206;Dab2ip-209;Dab2ip-211;Dab2ip-202;Dab2ip-207;Dab2ip-203;Dab2ip-201;Dab2ip-208;Dab2ip-204;Dab2ip-213,Dab2ip;Dab2ip;Dab2ip;Dab2ip;Dab2ip;Dab2ip;Dab2ip;Dab2ip;Dab2ip;Dab2ip;Dab2ip,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,9,12,69601,ENSMUSG00000026883,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20240,cg02679551,0.0000107,0.00000184,5.81764338,1.49E-08,gain,yes,-0.00000134,0.00000313,-0.426993787,0.669680255,neg,ns,0.001185259,0.000917976,1.291165931,0.197608119,pos,ns,0.704195215,-0.00000289,0.0000316,-0.091560271,0.927106554,neg,ns,0.038924785,Hoxc10,Hoxc10_Promoter,15,102966644,102966693,102966644,102966645,50,-,CGTCTGAATCATCAAGGCCATTTTCAAATCCCATTGGTCTAGCCGTCACA,Promoter (<=1kb),15,102966796,102971893,5098,1,Hoxc10-201,-152,Hoxc10-201;Hoxc5-202,Hoxc10;Hoxc5,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,8,21,209448,ENSMUSG00000022484,mapped to different genes,15,102966502,102966645,144,*,144,15,0.694444444,0.876623377,0.104166667,4.95E-12,CpGisland,TRUE,NA,NRS
2234,cg11672857,-0.00000373,0.00000239,-1.561636761,0.119393837,loss,ns,-0.00000173,0.00000406,-0.426976853,0.669692576,neg,ns,-0.000429836,0.001189673,-0.361305838,0.718116945,neg,ns,0.143804825,0.0000271,0.0000409,0.662791165,0.507956803,pos,ns,0.946724941,Gm30341,Gm30341_Intergenic_upstream,3,18714392,18714441,18714392,18714393,50,-,CGGGTCTGCTTACTTTATTATCTAGATCACAAACGTAATGATGGGTTTCA,Distal Intergenic,3,18753077,18753365,289,1,Gm30341-201,-38685,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,17,23,102632201,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26683,cg03959652,-0.00000288,0.00000305,-0.943209057,0.346308472,loss,ns,-0.00000221,0.00000518,-0.426934859,0.669723131,neg,ns,-0.002385215,0.00151771,-1.571587446,0.11706632,neg,ns,0.931568035,0.00010499,0.0000522,2.011543828,0.045133159,pos,ns,0.956569309,Camta1,Camta1_Exon,4,151029194,151029243,151029194,151029195,50,-,CGATGTTCCAATCAGGTCCTGAGGTAGGTAACCCAGCAAAGGCACTGCTC,"Exon (Per3-201/Per3, exon 8 of 21)",4,150917322,151861669,944348,2,Camta1-211,832426,Camta1-211;Per3-201;Per3-205;Per3-203;Per3-202,Camta1;Per3;Per3;Per3;Per3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,22,100072,ENSMUSG00000014592,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4450,cg09175523,0.00000292,0.00000531,0.549156324,0.583293513,gain,ns,0.00000385,0.00000902,0.42682972,0.669799632,pos,ns,0.000255065,0.002642894,0.096509707,0.923178127,pos,ns,0.034714494,0.0000724,0.0000909,0.796787762,0.426184107,pos,ns,0.476898572,Cfap77,Cfap77_Intron,2,28944145,28944194,28944145,28944146,50,-,CGGCCTCGGCTCCTAATTGGAAGCATTGGGCATTATCAACGGAGGATTTG,"Intron (Cfap77-203/Cfap77, intron 6 of 6)",2,28926949,29055024,128076,2,Cfap77-203,110830,Cfap77-203;Cfap77-204;Cfap77-205,Cfap77;Cfap77;Cfap77,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,6,329375,ENSMUSG00000079502,conserved gene and region,2,28943926,28944386,461,*,461,27,0.57483731,0.710688592,0.05856833,1.10E-14,CpGisland,TRUE,NA,NRS
8107,cg00203745,-0.0000205,0.00000551,-3.721931393,0.000234728,loss,ns,-0.00000399,0.00000936,-0.426797165,0.669823319,neg,ns,-0.00087479,0.002740805,-0.319172488,0.749810681,neg,ns,0.125048377,-0.000153946,0.0000943,-1.633279303,0.103425465,neg,ns,0.91716444,Ebf1,Ebf1_Intron,11,44749407,44749456,44749407,44749408,50,-,CGGCTTTAATAAAGAAAACCTAATTAAGAAGGAGCTGTTGATTGGTTTGC,"Intron (Ebf1-203/Ebf1, intron 6 of 15)",11,44617317,45004995,387679,1,Ebf1-203,132090,Ebf1-203;Ebf1-202;Ebf1-201,Ebf1;Ebf1;Ebf1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,80,13591,ENSMUSG00000057098,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26316,cg17848198,-0.0000355,0.0000102,-3.475672455,0.000582269,loss,ns,0.0000074,0.0000173,0.426743863,0.669862105,pos,ns,-0.006058852,0.005078271,-1.193093455,0.233745102,neg,ns,0.631257482,-0.0000578,0.000174641,-0.331224021,0.740699064,neg,ns,0.502619956,Gm14111,Gm14111_Intergenic_downstream,2,146719749,146719798,146719749,146719750,50,+,CGTTGCCATTAATTACGTCTTTGTGGAATATGGATATCTATTCAGAGTTA,Distal Intergenic,2,146754707,146755705,999,2,Gm14111-201,35907,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,15,17,668918,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14459,cg12815291,0.0000069,0.00000621,1.110341425,0.267712434,gain,ns,-0.0000045,0.0000106,-0.42654843,0.67000432,neg,ns,-0.004337854,0.003091971,-1.402941613,0.161634993,neg,ns,0.791464612,0.000113592,0.000106333,1.068271693,0.286229133,pos,ns,0.912186527,Zc3h3,Zc3h3_Intron,15,75756257,75756306,75756305,75756306,50,-,ATCGTCACTCAAACGCGCGGAGAGCTGTAAAATGTTTACAGAAAGGGTCG,"Intron (Zc3h3-201/Zc3h3, intron 11 of 11)",15,75754430,75841915,87486,2,Zc3h3-201,85609,Zc3h3-201,Zc3h3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,18,223642,ENSMUSG00000075600,conserved gene and region,15,75756178,75756306,129,*,129,12,0.488372093,1.592592593,0.093023256,4.32E-09,CpGisland,TRUE,NA,NRS
14146,cg25913635,0.00000181,0.000000666,2.724725209,0.00680087,gain,ns,-0.000000483,0.00000113,-0.426495735,0.670042667,neg,ns,0.000600398,0.000331455,1.811400591,0.071046578,pos,ns,1.148456833,-0.0000113,0.0000114,-0.993057543,0.321456404,neg,ns,0.020675287,Hoxd9,Hoxd9_Intron,2,74698876,74698925,74698924,74698925,50,-,TGTAAGGCTCGAATGTGCAAAACTGATAGTTTTACTAACCTATAAAAACG,"Intron (Hoxd9-201/Hoxd9, intron 1 of 1)",2,74697727,74700208,2482,1,Hoxd9-201,1149,Hoxd10-201;Hoxd9-201,Hoxd10;Hoxd9,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,8,15438,ENSMUSG00000043342,mapped to different genes,2,74698885,74699026,142,*,142,11,0.478873239,1.381078691,0.077464789,0.00000016,CpGisland,TRUE,U13,Hc-P
25034,cg18381049,-0.00000824,0.00000331,-2.489678799,0.013309722,loss,ns,-0.0000024,0.00000563,-0.426402882,0.670110242,neg,ns,0.000271865,0.001648117,0.164954744,0.869087114,pos,ns,0.060936689,-0.000112581,0.0000567,-1.986300232,0.047880328,neg,ns,0.916764687,Fgfr2,Fgfr2_Intron,7,131713291,131713340,131713339,131713340,50,-,ATTTCTGTAATAACGACAACAGATGGTAATGCTACAAACACTAAATCACG,"Intron (Fgfr2-217/Fgfr2, intron 2 of 6)",7,130162451,133123350,2960900,2,Fgfr2-217,1410010,Fgfr2-217,Fgfr2,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,58,79,14183,ENSMUSG00000030849,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15996,cg26743954,0.0000791,0.00000927,8.537346111,6.25E-16,gain,yes,0.00000671,0.0000157,0.426179984,0.670272467,pos,ns,-0.000286069,0.004613074,-0.062012639,0.950592729,neg,ns,0.022005512,0.000417484,0.000158643,2.631589894,0.008923734,pos,ns,0.860437768,Gm12416,Gm12416_Intergenic_downstream,4,84108300,84108349,84108348,84108349,50,+,TGCATCTGGGCCCAGCGGATTTGTAGCACACCTGCATTGGAGGTAAATCG,Distal Intergenic,4,84104895,84105902,1008,1,Gm12416-201,3405,Gm12416-201,Gm12416,3405,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,11,668010,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2632,cg09090384,-0.00000477,0.0000033,-1.446364262,0.149085362,loss,ns,0.00000239,0.0000056,0.426020591,0.670388483,pos,ns,-0.004414742,0.001641794,-2.688973621,0.007554954,neg,ns,2.121768148,0.000172092,0.0000565,3.047975939,0.002502237,pos,ns,0.882189598,Camk2g,Camk2g_threeUTR,14,20737280,20737329,20737280,20737281,50,+,CGGTGCGGCAGGGGCCCCTGAGCAGTGATAGTGGACATTGAGCCACTTGC,3' UTR,14,20734875,20794051,59177,2,Camk2g-203,56722,Camk2g-203;Camk2g-201;Camk2g-202;Camk2g-205;Camk2g-217;Camk2g-210;Camk2g-209;Camk2g-204;Camk2g-212;Camk2g-211;Camk2g-214;Ndst2-202,Camk2g;Camk2g;Camk2g;Camk2g;Camk2g;Camk2g;Camk2g;Camk2g;Camk2g;Camk2g;Camk2g;Ndst2,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,15,12325,ENSMUSG00000021820,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
24872,cg20517495,0.00000126,0.00000248,0.507039745,0.612487412,gain,ns,-0.0000018,0.00000422,-0.425976271,0.670420744,neg,ns,-0.0024909,0.001235154,-2.016672535,0.044591653,neg,ns,1.350746431,0.0000743,0.0000425,1.749409545,0.081209819,pos,ns,0.062211201,Pitx2,Pitx2_Promoter,3,129194976,129195025,129195024,129195025,50,-,TCTCAGATCAGAGCCCCATCAGAAATTCTTTCAAGTGTCCTTCTGCGTCG,Promoter (4-5kb),3,129199878,129219590,19713,1,Pitx2-207,-4902,Pitx2-207;Pitx2-201;Pitx2-203;Pitx2-205,Pitx2;Pitx2;Pitx2;Pitx2,0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,24,18741,ENSMUSG00000028023,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
23943,cg06608677,-0.000000661,0.00000248,-0.266530341,0.790007994,loss,ns,-0.00000179,0.00000421,-0.425956636,0.670435036,neg,ns,0.001315939,0.001234491,1.06597672,0.287263672,pos,ns,0.541719292,-0.0000822,0.0000425,-1.936926793,0.053662684,neg,ns,0.94606931,Hectd4,Hectd4_Exon,5,121253897,121253946,121253945,121253946,50,+,GCAGAACGTTTGCGCTCTGTTTGTGGGAATCAGAGCAATGCCTATGCCCG,"Exon (Hectd4-201/Hectd4, exon 2 of 76)",5,121220219,121368577,148359,1,Hectd4-201,33678,Hectd4-201,Hectd4,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,8,269700,ENSMUSG00000042744,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9720,cg03484289,-0.0000214,0.00000737,-2.909371685,0.003883463,loss,ns,-0.00000533,0.0000125,-0.425923523,0.670459139,neg,ns,-0.006519619,0.003668222,-1.77732401,0.076495335,neg,ns,1.116365047,0.0000168,0.00012615,0.132983019,0.89429309,pos,ns,0.646182101,Bbx,Bbx_Exon,16,50274608,50274657,50274656,50274657,50,-,GCTAGTATCTTGGTAGCACCTCGGTTATCAAGCCTGGGGTGTTCCTGACG,"Exon (Bbx-208/Bbx, exon 5 of 17)",16,50191844,50432390,240547,2,Bbx-208,157733,Bbx-208;Bbx-201;Bbx-203;Bbx-205;Bbx-202;Bbx-204;Bbx-207,Bbx;Bbx;Bbx;Bbx;Bbx;Bbx;Bbx,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,10,70508,ENSMUSG00000022641,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6182,cg13613983,-0.00000298,0.00000151,-1.979402424,0.048655106,loss,ns,-0.00000109,0.00000256,-0.42590056,0.670475855,neg,ns,0.000156538,0.000749556,0.208841019,0.834709507,pos,ns,0.07846464,-0.0000152,0.0000258,-0.587946962,0.556995947,neg,ns,0.089571517,Pura,Pura_Intron,18,36286952,36287001,36286952,36286953,50,+,CGTACAGTAGGGCGCCCTGCTACTGTACTGGGGAGTCAGTGCCCTGTTAC,"Intron (Pura-201/Pura, intron 1 of 1)",18,36281097,36292535,11439,1,Pura-201,5855,Pura-201,Pura,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,19,19290,ENSMUSG00000043991,conserved gene but different region,18,36286687,36288029,1343,*,1343,129,0.68652271,0.823041768,0.096053611,4.14E-95,CpGisland,TRUE,U1,Pr-A
25676,cg16659834,0.000118808,0.0000136,8.741524648,1.48E-16,gain,yes,-0.00000983,0.0000231,-0.425771247,0.670569987,neg,ns,0.008802225,0.006764489,1.301240248,0.194142508,pos,ns,0.711879363,-0.000115083,0.00023263,-0.494702544,0.621160518,neg,ns,0.54749089,Btbd3,Btbd3_Exon,2,138279754,138279803,138279754,138279755,50,+,CGATGATGTTCAATAATGATTTGATGGCAGATGTACATTTTGTGGTTGGG,"Exon (Btbd3-202/Btbd3, exon 3 of 5)",2,138256565,138287422,30858,1,Btbd3-202,23189,Btbd3-202;Btbd3-204;Btbd3-203;Btbd3-201,Btbd3;Btbd3;Btbd3;Btbd3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,6,228662,ENSMUSG00000062098,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
15654,cg13488871,0.00000241,0.00000127,1.906013697,0.057573128,gain,ns,-0.000000916,0.00000215,-0.425760751,0.670577628,neg,ns,-0.000343651,0.00063043,-0.545105657,0.586072807,neg,ns,0.232048429,-0.0000141,0.0000217,-0.650000437,0.516173319,neg,ns,0.03072716,Nfib,Nfib_Intron,4,82507076,82507125,82507076,82507077,50,+,CGACACATCAAGAAAAGTAGGCAGGTTCAAGTCAACCATGAAATGGTCAC,"Intron (Nfib-212/Nfib, intron 1 of 1)",4,82498321,82705750,207430,2,Nfib-212,198625,Nfib-201;Nfib-203;Nfib-202;Nfib-205;Nfib-206;Nfib-204;Nfib-207;Nfib-209;Nfib-210;Nfib-208;Nfib-212,Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,66,18028,ENSMUSG00000008575,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
24803,cg00027948,-0.00000579,0.00000827,-0.699897509,0.484516193,loss,ns,-0.00000598,0.0000141,-0.425676054,0.670639285,neg,ns,-0.000450234,0.004117514,-0.109346181,0.912998666,neg,ns,0.039529857,-0.0000602,0.000141601,-0.424903011,0.671202148,neg,ns,0.832431975,Esyt1,Esyt1_Exon,10,128517078,128517127,128517078,128517079,50,+,CGGTCTTTGGCAATCAGGTCCTGGGCCTCTAATACATGGATCCGAAGCAC,"Exon (Esyt1-201/Esyt1, exon 18 of 31)",10,128509965,128525870,15906,2,Esyt1-201,8743,Esyt1-201;Esyt1-205;Esyt1-202;Esyt1-203;Esyt1-204,Esyt1;Esyt1;Esyt1;Esyt1;Esyt1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,23943,ENSMUSG00000025366,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12901,cg19447141,-0.0000302,0.00000733,-4.118437945,0.000049,loss,ns,0.0000053,0.0000124,0.425598534,0.670695721,pos,ns,0.000393078,0.003645948,0.107812176,0.914214428,pos,ns,0.038951929,-0.0000224,0.000125384,-0.178409835,0.85851766,neg,ns,0.940166482,Arid5b,Arid5b_Intron,10,68166874,68166923,68166874,68166875,50,-,CGTAATTCATGATAAACAGTCATTGGAAAATATTACAATGTTGTCTTTTT,"Intron (Arid5b-204/Arid5b, intron 4 of 9)",10,68092520,68278740,186221,2,Arid5b-204,111817,Arid5b-204;Arid5b-201,Arid5b;Arid5b,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,33,71371,ENSMUSG00000019947,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8475,cg17011403,-0.00000426,0.00000463,-0.91952678,0.358535045,loss,ns,0.00000335,0.00000787,0.425483688,0.670779332,pos,ns,0.000778641,0.002305267,0.337766172,0.73576801,pos,ns,0.133259099,0.0000186,0.0000793,0.23399776,0.815141175,pos,ns,0.109651414,Lbx1,Lbx1_Intergenic_downstream,19,45223698,45223747,45223746,45223747,50,+,TTAAAAATATTTATCGGGAGCAGATTTACGTTTCTGGGTTTCCAGTCTCG,Distal Intergenic,19,45232684,45235812,3129,2,Lbx1-201,12065,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,30,50,16814,ENSMUSG00000025216,mapped to different genes,19,45223712,45223906,195,*,195,15,0.564102564,0.969827586,0.076923077,4.54E-10,CpGisland,TRUE,U13,Hc-P
26287,cg20133411,-0.0000238,0.00000467,-5.094673008,0.000000608,loss,yes,0.00000337,0.00000793,0.425475971,0.670784951,pos,ns,0.000378973,0.002323285,0.163119308,0.870530782,pos,ns,0.060215867,-0.0000231,0.0000799,-0.288563876,0.773107996,neg,ns,0.920456776,Ralgapa2,Ralgapa2_Intron,2,146279728,146279777,146279776,146279777,50,+,GCCAGGTGGTCGCGCTTCAATTACATTAGCTAGCCATTCTAGGGTTAACG,"Intron (Ralgapa2-202/Ralgapa2, intron 38 of 40)",2,146239879,146512004,272126,2,Ralgapa2-202,232227,Ralgapa2-202;Ralgapa2-211;Ralgapa2-210;Ralgapa2-205;Ralgapa2-208,Ralgapa2;Ralgapa2;Ralgapa2;Ralgapa2;Ralgapa2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,26,241694,ENSMUSG00000037110,conserved gene and region,2,146279575,146279804,230,*,230,14,0.595652174,0.706140351,0.060869565,4.11E-08,CpGisland,TRUE,U11,Tr-P
25238,cg15600660,-0.00000196,0.00000293,-0.668394338,0.504379276,loss,ns,0.00000211,0.00000497,0.42504972,0.671095313,pos,ns,0.001834902,0.001456572,1.259739845,0.208710797,pos,ns,0.680455084,-0.0000379,0.0000501,-0.756641002,0.449839616,neg,ns,0.922588813,Cstf2,Cstf2_Exon,X,134072446,134072495,134072446,134072447,50,+,CGGGCCTGCATCAATTGAGCGAGTTCAAGGTACCCATTGTATCTGTGGGT,"Exon (Cstf2-207/Cstf2, exon 7 of 12)",20,134059187,134086046,26860,1,Cstf2-203,13259,Cstf2-203;Cstf2-201;Cstf2-202;Cstf2-207;Cstf2-208;Cstf2-204,Cstf2;Cstf2;Cstf2;Cstf2;Cstf2;Cstf2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,108062,ENSMUSG00000031256,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21544,cg03122389,-0.00000378,0.00000316,-1.195953141,0.23262881,loss,ns,-0.00000228,0.00000536,-0.425047776,0.671096729,neg,ns,-0.001615541,0.001571097,-1.028288866,0.304615615,neg,ns,0.516247837,0.000063,0.000054,1.166185169,0.244435988,pos,ns,0.931189562,Atxn7l2,Atxn7l2_Exon,3,108207963,108208012,108207963,108207964,50,-,CGCAGTGCTTCTGGAAAGCTTGAGGCTTCACCACTTGGCTGCAGTGGTTA,"Exon (Atxn7l2-202/Atxn7l2, exon 3 of 11)",3,108202222,108210486,8265,2,Atxn7l2-202,2474,Atxn7l2-202;Atxn7l2-201;Atxn7l2-206;Atxn7l2-203;Atxn7l2-204;Atxn7l2-205;Atxn7l2-207;Sypl2-201,Atxn7l2;Atxn7l2;Atxn7l2;Atxn7l2;Atxn7l2;Atxn7l2;Atxn7l2;Sypl2,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,72522,ENSMUSG00000048997,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13702,cg09140178,-0.0000869,0.0000134,-6.494605666,3.31E-10,loss,yes,0.00000966,0.0000227,0.425035196,0.67110589,pos,ns,-0.016507087,0.006660735,-2.478268299,0.013734303,neg,ns,1.862193379,0.000286351,0.000229062,1.250102192,0.212205081,pos,ns,0.838014935,Gm4052,Gm4052_Intergenic_upstream,13,72184335,72184384,72184383,72184384,50,-,CACAGTCAATAATTGTGCTAAAGGCTGCTTTCAAATCTGTGAGGGATTCG,Distal Intergenic,13,72350221,72350671,451,1,Gm4052-201,-165886,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,16,16,100042828,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2104,cg02968414,0.0000793,0.000025,3.170873391,0.001671826,gain,ns,-0.0000181,0.0000425,-0.424943776,0.671172462,neg,ns,0.024713241,0.012449319,1.98510791,0.048013503,pos,ns,1.31863661,-0.0000799,0.000428131,-0.186516645,0.852161625,neg,ns,0.628957009,Skida1,Skida1_fiveUTR,2,18048778,18048827,18048826,18048827,50,-,GCCGCTGCTTTAGCTACAAATAAAATGACAGAGTGAAGTGAGCTCGTCCG,Promoter (<=1kb),2,18047716,18048784,1069,2,Skida1-203,0,Skida1-205;Skida1-202;Skida1-201;Skida1-203;Skida1-204,Skida1;Skida1;Skida1;Skida1;Skida1,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,8,31,72668,ENSMUSG00000054074,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
3329,cg04627926,0.000000443,0.00000181,0.243952781,0.807428761,gain,ns,0.00000131,0.00000308,0.424902144,0.671202779,pos,ns,0.001158371,0.0009031,1.282661286,0.20056899,pos,ns,0.697736212,-0.0000768,0.0000311,-2.471755154,0.013982006,neg,ns,0.952836996,Dtna,Dtna_Exon,18,23611092,23611141,23611140,23611141,50,+,AGGCTAGCTGATGAACATGTTCTCATCGGGTTGTATGTCAACATGCTCCG,"Exon (Dtna-206/Dtna, exon 13 of 18)",18,23415442,23659715,244274,1,Dtna-202,195650,Dtna-202;Dtna-206;Dtna-203,Dtna;Dtna;Dtna,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,2,13527,ENSMUSG00000024302,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10198,cg18522824,0.0000351,0.00000355,9.902142666,2.89E-20,gain,yes,0.00000256,0.00000603,0.424858303,0.671234707,pos,ns,0.004155497,0.001765627,2.353552818,0.019219101,pos,ns,1.716266933,0.0000606,0.0000607,0.997443761,0.319327085,pos,ns,0.085544433,Hoxa9,Hoxa9_Exon,6,52230105,52230154,52230105,52230106,50,-,CGTGCTGTCGAGAGAAAGGTGGATCCCAACAACAGGAAACTACCTAAATC,Promoter (<=1kb),6,52223963,52231089,7127,2,Hoxa9-203,935,Hoxa10-202;Hoxa10-203;Hoxa10-201;Hoxa10-204;Hoxa9-201;Hoxa9-203;Hoxa9-202;Hoxa9-204;Hoxa9-205,Hoxa10;Hoxa10;Hoxa10;Hoxa10;Hoxa9;Hoxa9;Hoxa9;Hoxa9;Hoxa9,0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,14,15405,ENSMUSG00000038227,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
19500,cg16825020,-0.0000237,0.00000999,-2.372014266,0.018301791,loss,ns,0.00000721,0.000017,0.424661884,0.671377754,pos,ns,0.005728205,0.004972272,1.152029529,0.250196593,pos,ns,0.601718609,-0.000124233,0.000170996,-0.726527631,0.468063596,neg,ns,0.565294682,Gm12684,Gm12684_Intergenic_upstream,4,99459768,99459817,99459816,99459817,50,-,GTAAGAGGGTCACAACACCCTTTTCCCACCCACTTAGTGGGCAGTAAGCG,Distal Intergenic,4,99430256,99431254,999,2,Gm12684-201,-28563,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,8,665212,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9084,cg18488855,0.0000328,0.00000387,8.477358787,9.50E-16,gain,yes,-0.00000279,0.00000657,-0.424565022,0.671448301,neg,ns,0.004836075,0.00192408,2.51344762,0.012462542,pos,ns,1.904393353,-0.00012452,0.0000662,-1.881847334,0.060793459,neg,ns,0.050555571,Nova1,Nova1_Exon,12,46818695,46818744,46818743,46818744,50,-,GTCTATGGGAACCCCAGTGTGGGTCCCGTTCTGCTGGATGGGAGCTGCCG,Promoter (<=1kb),12,46694517,46818929,124413,2,Nova1-201,185,Nova1-201;Nova1-203;Nova1-202;Nova1-205,Nova1;Nova1;Nova1;Nova1,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,24,664883,ENSMUSG00000021047,conserved gene and region,12,46818385,46818823,439,*,439,48,0.69476082,0.92114006,0.109339408,9.96E-39,CpGisland,TRUE,U3,Pr-B
5839,cg05839636,-0.00000138,0.00000211,-0.653243054,0.514083791,loss,ns,-0.00000152,0.00000359,-0.424492457,0.671501154,neg,ns,0.00164349,0.00105219,1.561970847,0.119315106,pos,ns,0.92330457,-0.0000171,0.0000362,-0.471829176,0.63738065,neg,ns,0.068706604,Etf1,Etf1_fiveUTR,18,34931905,34931954,34931953,34931954,50,+,CGTAGGACACCGGCTCCCTCTCTCCAGGCAGCTGCATGTGTTGCAATCCG,Promoter (<=1kb),18,34902785,34932007,29223,2,Etf1-201,53,Etf1-201,Etf1,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,3,225363,ENSMUSG00000024360,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
25877,cg21400910,-0.00000732,0.00000505,-1.448159753,0.148583007,loss,ns,0.00000364,0.00000858,0.424404021,0.671565568,pos,ns,0.000917603,0.002514558,0.364916113,0.715422851,pos,ns,0.145437193,-0.0000736,0.0000865,-0.851542425,0.395125425,neg,ns,0.913688015,Igsf21,Igsf21_Intron,4,140114126,140114175,140114174,140114175,50,+,GTTGGAAATAGCTGTAATAAACTTGATATCCCACTTATGGGCCAATCCCG,"Intron (Igsf21-201/Igsf21, intron 2 of 9)",4,140026846,140246784,219939,2,Igsf21-201,132609,Igsf21-201,Igsf21,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,3,230868,ENSMUSG00000040972,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22002,cg05508478,-0.0000641,0.0000209,-3.073184177,0.002305976,loss,ns,-0.000015,0.0000355,-0.424362342,0.671595927,neg,ns,-0.005678688,0.010386593,-0.546732553,0.5849558,neg,ns,0.232876949,-0.000693009,0.000357194,-1.940148057,0.053268333,neg,ns,0.164327151,Zfp143,Zfp143_Promoter,7,110061781,110061830,110061829,110061830,50,+,TATATAAATGTGTTTTTACCCAGTGTGCATTATTCTCCGCCTGGCCGCCG,Promoter (<=1kb),7,110061217,110094808,33592,1,Zfp143-204,564,Zfp143-204;Zfp143-205;Zfp143-201;Zfp143-202,Zfp143;Zfp143;Zfp143;Zfp143,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,3,7,20841,ENSMUSG00000061079,conserved gene and region,7,110061325,110061866,542,*,542,40,0.590405904,0.850196078,0.073800738,2.91E-25,CpGisland,TRUE,U1,Pr-A
17533,cg06795598,-0.00000603,0.00000234,-2.574163224,0.010512363,loss,ns,0.00000169,0.00000398,0.424270863,0.671662561,pos,ns,0.000945703,0.001165911,0.811127474,0.417914781,pos,ns,0.378912268,0.0000246,0.0000401,0.614678152,0.539218184,pos,ns,0.916346198,Fnbp4,Fnbp4_Exon,2,90758303,90758352,90758303,90758304,50,+,CGAGCCTTGGAGGAAGGAGATGGTAGTGTGTCAGGGTCTAGTCCACGTTC,"Exon (Fnbp4-201/Fnbp4, exon 8 of 17)",2,90745370,90781021,35652,1,Fnbp4-201,12933,Fnbp4-201;Fnbp4-210;Fnbp4-202;Fnbp4-204;Fnbp4-209;Fnbp4-208,Fnbp4;Fnbp4;Fnbp4;Fnbp4;Fnbp4;Fnbp4,0;0;0;5731;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,6,55935,ENSMUSG00000008200,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22887,cg17850518,0.00000459,0.00000444,1.034668707,0.30163011,gain,ns,-0.0000032,0.00000754,-0.424118585,0.671773489,neg,ns,-0.00467646,0.002209681,-2.116350716,0.035111711,neg,ns,1.454548009,0.000127941,0.000076,1.683637313,0.093258432,pos,ns,0.070683272,Meis2,Meis2_fiveUTR,2,116065228,116065277,116065228,116065229,50,+,CGAACTGTCGTGTTTCATGGCTTTTTGCCACTCCAGCTGTCAATCAAAGC,Promoter (<=1kb),2,115863064,116065839,202776,2,Meis2-205,562,Meis2-201;Meis2-203;Meis2-205;Meis2-206;Meis2-204;Meis2-202;Meis2-213;Meis2-210;Meis2-209,Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2,0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,11,97,17536,ENSMUSG00000027210,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12615,cg03661236,0.00000313,0.00000329,0.952960288,0.341352637,gain,ns,-0.00000237,0.00000559,-0.42406733,0.671810827,neg,ns,0.005563127,0.001636602,3.399192826,0.000764229,pos,ns,3.116776521,-0.000262963,0.0000563,-4.672189766,0.00000445,neg,ns,0.918496971,Efr3a,Efr3a_Exon,15,65867270,65867319,65867318,65867319,50,+,GCAAATTTGCTTCATGATAGACTTGCCCAAATATTGGAACTCACCATACG,"Exon (Efr3a-201/Efr3a, exon 22 of 23)",15,65787040,65873816,86777,1,Efr3a-201,80230,Efr3a-201;Efr3a-205;Efr3a-213;Efr3a-211,Efr3a;Efr3a;Efr3a;Efr3a,0;0;0;9762,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,76740,ENSMUSG00000015002,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25677,cg19902443,0.00000467,0.00000704,0.66376273,0.507335518,gain,ns,-0.00000507,0.000012,-0.424039748,0.671830921,neg,ns,0.000663927,0.003503267,0.189516422,0.849812111,pos,ns,0.070677084,-0.00020525,0.000120477,-1.703640293,0.089450456,neg,ns,0.808984098,Btbd3,Btbd3_Exon,2,138279774,138279823,138279822,138279823,50,+,TTGATGGCAGATGTACATTTTGTGGTTGGGCCACCAGGTGGGACTCAACG,"Exon (Btbd3-202/Btbd3, exon 3 of 5)",2,138256565,138287422,30858,1,Btbd3-202,23209,Btbd3-202;Btbd3-204;Btbd3-203;Btbd3-201,Btbd3;Btbd3;Btbd3;Btbd3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,6,228662,ENSMUSG00000062098,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
487,cg05799250,-0.000000503,0.000000317,-1.586621483,0.113617854,loss,ns,-0.000000228,0.000000538,-0.423953059,0.671894075,neg,ns,0.000323202,0.000157722,2.049189901,0.041284991,pos,ns,1.384207804,-0.0000131,0.00000542,-2.42277986,0.015974997,neg,ns,0.007842293,Epc1,Epc1_fiveUTR,18,6490590,6490639,6490590,6490591,50,-,CGCGCCCGAAACGACAGTTTACTCATCTCAGGCGCAGCAGATACCTCTCC,5' UTR,18,6435951,6516108,80158,2,Epc1-203,25469,Epc1-203;Epc1-201;Epc1-202,Epc1;Epc1;Epc1,0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,8,13831,ENSMUSG00000024240,conserved gene but different region,18,6490174,6491299,1126,*,1126,149,0.703374778,1.070212481,0.132326821,4.64E-133,CpGisland,TRUE,U1,Pr-A
13242,cg09711113,-0.00000446,0.0000098,-0.454467213,0.649810642,loss,ns,-0.00000706,0.0000167,-0.423909201,0.671926027,neg,ns,-0.008883527,0.004879984,-1.820400727,0.069662107,neg,ns,1.157003397,0.000340675,0.000167822,2.02997261,0.043212988,pos,ns,0.842695844,Nlgn2,Nlgn2_Exon,11,69834000,69834049,69834048,69834049,50,-,AGAGGTTGAGGTACAGGCAGTCCTCGCTCTGGTTCTGCACGTAGGTGGCG,Promoter (<=1kb),11,69823122,69834849,11728,2,Nlgn2-201,800,Nlgn2-201;Nlgn2-202;Nlgn2-203;Tmem256-203;Tmem256-201;Tmem256-205;Tmem256-204;Tmem256-202,Nlgn2;Nlgn2;Nlgn2;Tmem256;Tmem256;Tmem256;Tmem256;Tmem256,0;0;0;-4465;-4475;-4506;-4514;-4589,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,17,216856,ENSMUSG00000051790,conserved gene and region,11,69833903,69834425,523,*,523,51,0.709369025,0.77609986,0.09751434,2.27E-38,CpGisland,TRUE,NA,NRS
14021,cg12242958,-0.00000039,0.000000297,-1.313880771,0.189857784,loss,ns,0.000000214,0.000000504,0.423778298,0.672021398,pos,ns,0.00045246,0.000147741,3.062519239,0.002387213,pos,ns,2.622108866,-0.0000131,0.00000508,-2.577869792,0.010402662,neg,ns,0.006753967,Arpc2,Arpc2_fiveUTR,1,74236824,74236873,74236872,74236873,50,-,CCATGATCCTGCTGGAGGTGAACAACCGCATCATCGAGGAGACGCTCGCG,Promoter (<=1kb),1,74236084,74236888,805,1,Arpc2-204,740,Arpc2-204;Arpc2-203;Arpc2-201;Arpc2-202,Arpc2;Arpc2;Arpc2;Arpc2,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,6,76709,ENSMUSG00000006304,conserved gene but different region,1,74236248,74237193,946,*,946,100,0.695560254,0.886431784,0.105708245,2.03E-78,CpGisland,TRUE,U1,Pr-A
16487,cg16426648,0.000000229,0.00000352,0.064878233,0.948312768,gain,ns,-0.00000254,0.00000598,-0.423739976,0.672049319,neg,ns,0.00206772,0.00175339,1.179269821,0.239195013,pos,ns,0.62124788,0.0000446,0.0000603,0.740362264,0.459640571,pos,ns,0.920852747,Gm37240,Gm37240_Intron,3,85161049,85161098,85161049,85161050,50,+,CGGTAATGTTTATGAGATGTATAATTCAAGGCAAATCTGTCCAGATAGAG,"Intron (Gm37240-203/Gm37240, intron 3 of 9)",3,84496426,85887516,1391091,2,Gm37240-203,726418,Gm37240-203,Gm37240,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25261,cg12227830,0.0000116,0.000011,1.056188149,0.291704662,gain,ns,-0.00000791,0.0000187,-0.423696145,0.672081254,neg,ns,-0.010075229,0.005467901,-1.842613714,0.066340176,neg,ns,1.178223378,0.000825593,0.000188041,4.39050532,0.0000155,pos,ns,0.255743602,Cxxc4,Cxxc4_Exon,3,134240571,134240620,134240619,134240620,50,-,GAAAAGGTGTGGGGTCTGCGTGCCCTGCAAGAGGCTCATCAACTGTGGCG,Promoter (<=1kb),3,134240590,134246917,6328,1,Cxxc4-205,0,Cxxc4-204;Cxxc4-203;Cxxc4-202;Cxxc4-201;Cxxc4-205,Cxxc4;Cxxc4;Cxxc4;Cxxc4;Cxxc4,0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,18,20,319478,ENSMUSG00000044365,conserved gene and region,3,134240265,134240649,385,*,385,21,0.587012987,0.63362069,0.054545455,5.57E-11,CpGisland,TRUE,U3,Pr-B
5878,cg24806503,-0.00000419,0.0000016,-2.611235825,0.009460305,loss,ns,0.00000115,0.00000272,0.423592488,0.672156781,pos,ns,0.001072307,0.000798268,1.343292337,0.180159868,pos,ns,0.744341946,-0.000017,0.0000275,-0.619842497,0.535816817,neg,ns,0.054466066,Cnot4,Cnot4_fiveUTR,6,35133667,35133716,35133715,35133716,50,+,GTTCCACAGCCAGACGGGCCACCATCTTACATTAGGGTAAGACTCCTCCG,Promoter (<=1kb),6,35022066,35133694,111629,2,Cnot4-202,0,Cnot4-206;Cnot4-202;Cnot4-203;Cnot4-201;Cnot4-207;Cnot4-208,Cnot4;Cnot4;Cnot4;Cnot4;Cnot4;Cnot4,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,10,53621,ENSMUSG00000038784,conserved gene and region,6,35133374,35133999,626,*,626,54,0.642172524,0.840226685,0.086261981,1.43E-37,CpGisland,TRUE,U1,Pr-A
13167,cg00916651,-0.0000243,0.00000362,-6.713048295,9.09E-11,loss,yes,0.0000026,0.00000615,0.423584617,0.672162516,pos,ns,-0.003691837,0.001800664,-2.05026439,0.041179388,neg,ns,1.385320113,0.0000152,0.0000619,0.245566751,0.806180125,pos,ns,0.935014448,Tcf4,Tcf4_Intron,18,69613636,69613685,69613684,69613685,50,-,CAAATTTCTGCCCGATCGAGTTAATAAGAAAATATATACATGCAGAGGCG,"Intron (Tcf4-201/Tcf4, intron 9 of 20)",18,69344146,69684343,340198,1,Tcf4-201,269490,Tcf4-201;Tcf4-207;Tcf4-240;Tcf4-254;Tcf4-246;Tcf4-206;Tcf4-202;Tcf4-257;Tcf4-232;Tcf4-248;Tcf4-231;Tcf4-205;Tcf4-253;Tcf4-238;Tcf4-249;Tcf4-219;Tcf4-227;Tcf4-250;Tcf4-229;Tcf4-260;Tcf4-226;Tcf4-216;Tcf4-256;Tcf4-230;Tcf4-221;Tcf4-234;Tcf4-258;Tcf4-217;Tcf4-247;Tcf4-252;Tcf4-218;Tcf4-243;Tcf4-237;Tcf4-239;Tcf4-262;Tcf4-223;Tcf4-212;Tcf4-204;Tcf4-225;Tcf4-222;Tcf4-261;Tcf4-255;Tcf4-203;Tcf4-236;Tcf4-228;Tcf4-220;Tcf4-242;Tcf4-213;Tcf4-251,Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,42,66,21413,ENSMUSG00000053477,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10835,cg11642858,-0.0000129,0.0000044,-2.921532069,0.003738981,loss,ns,0.00000317,0.00000748,0.423455527,0.672256579,pos,ns,0.001237381,0.002190228,0.564955259,0.572512794,pos,ns,0.242214804,-0.0000123,0.0000753,-0.163577275,0.870170527,neg,ns,0.693969071,Fam193b,Fam193b_fiveUTR,13,55569774,55569823,55569822,55569823,50,-,GAGTCCCCTGCTGCCCGATGCAGTGTCTGCAGAGCCAAACGCATCTTCCG,5' UTR,13,55539316,55571100,31785,2,Fam193b-206,1277,Fam193b-206;Fam193b-201;Fam193b-203;Tmed9-203,Fam193b;Fam193b;Fam193b;Tmed9,0;0;0;-3909,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,11,212483,ENSMUSG00000021495,conserved gene and region,13,55569789,55569856,68,*,68,8,0.647058824,1.185185185,0.117647059,0.000000614,CpGisland,TRUE,U4,Pr-F
19078,cg12436766,0.00000207,0.000000671,3.080031258,0.00225517,gain,ns,0.000000483,0.00000114,0.423281715,0.672383237,pos,ns,0.000463697,0.000334018,1.38823736,0.166061573,pos,ns,0.779730852,-0.0000053,0.0000115,-0.46104503,0.645089593,neg,ns,0.019425706,Neurod2,Neurod2_Exon,11,98327237,98327286,98327285,98327286,50,-,TGAAGGTGCATATCGTAAGACAAGAGATTCTCCGAGTGGACGCCCCCGCG,"Exon (Neurod2-201/Neurod2, exon 2 of 2)",11,98325415,98329648,4234,2,Neurod2-201,2362,Neurod2-201,Neurod2,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,22,18013,ENSMUSG00000038255,conserved gene and region,11,98326920,98328611,1692,*,1692,170,0.684397163,0.858173443,0.100472813,1.13E-128,CpGisland,TRUE,NA,NRS
15393,cg12436917,-0.0000547,0.0000138,-3.957693776,0.0000939,loss,ns,0.00000993,0.0000235,0.423220537,0.67242782,pos,ns,-0.005554558,0.006873698,-0.808088705,0.419659182,neg,ns,0.37710327,-0.000267308,0.000236386,-1.130810513,0.259008942,neg,ns,0.503897331,Gria2,Gria2_threeUTR,3,80690476,80690525,80690524,80690525,50,-,GCCTTGCTCACTGAGTTTCAATACTGCAAGATTTACTGGGGTTCTTCACG,3' UTR,3,80681450,80802835,121386,2,Gria2-201,112310,Gria2-201;Gria2-202;Gria2-203;Gria2-206,Gria2;Gria2;Gria2;Gria2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,12,19,14800,ENSMUSG00000033981,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7818,cg24673572,-0.00000189,0.000000689,-2.741881185,0.006463729,loss,ns,-0.000000496,0.00000117,-0.423210816,0.672434905,neg,ns,-0.0000455,0.000343025,-0.132623084,0.894577518,neg,ns,0.048382021,-0.0000154,0.0000118,-1.306282941,0.192424727,neg,ns,0.014823026,Eny2,Eny2_fiveUTR,15,44428171,44428220,44428219,44428220,50,+,GTAGGTAACGGTCCTCAGCGCAAGGGTCATTTCGTCGCTGGGAAGGGACG,Promoter (<=1kb),15,44428042,44433008,4967,1,Eny2-210,129,Eny2-210;Eny2-203;Eny2-204;Eny2-205;Eny2-201;Eny2-202;Eny2-206;Eny2-208;Eny2-209;Nudcd1-206;Nudcd1-201;Nudcd1-202;Nudcd1-204;Nudcd1-205;Nudcd1-207;Nudcd1-203,Eny2;Eny2;Eny2;Eny2;Eny2;Eny2;Eny2;Eny2;Eny2;Nudcd1;Nudcd1;Nudcd1;Nudcd1;Nudcd1;Nudcd1;Nudcd1,0;0;0;0;0;0;0;0;-4940;-298;0;-386;-283;-312;-363;-317,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,5,223527,ENSMUSG00000022338,conserved gene and region,15,44428086,44428510,425,*,425,38,0.644705882,0.8608742,0.089411765,3.12E-27,CpGisland,TRUE,U1,Pr-A
1612,cg20596346,-0.00000107,0.00000223,-0.481625706,0.630411676,loss,ns,-0.0000016,0.00000379,-0.423198551,0.672443843,neg,ns,-0.00166612,0.001110282,-1.500628471,0.13446947,neg,ns,0.871376306,0.0000193,0.0000382,0.50618217,0.613088549,pos,ns,0.968228693,Runx1t1,Runx1t1_Exon,4,13846886,13846935,13846934,13846935,50,+,CACCTCACCTGTTGACTCCTCAGAGCTGCTTCTCGATGTGAACGAAAACG,"Exon (Runx1t1-201/Runx1t1, exon 5 of 11)",4,13743436,13893649,150214,1,Runx1t1-201,103450,Runx1t1-201;Runx1t1-206;Runx1t1-204;Runx1t1-203;Runx1t1-202,Runx1t1;Runx1t1;Runx1t1;Runx1t1;Runx1t1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,24,12395,ENSMUSG00000006586,conserved gene and region,4,13846797,13846945,149,*,149,10,0.597315436,0.788359788,0.067114094,0.00000263,CpGisland,TRUE,U15,NS
11571,cg22824265,-0.00000784,0.00000228,-3.438069164,0.00066597,loss,ns,0.00000164,0.00000388,0.423115189,0.672504595,pos,ns,0.001485005,0.001135614,1.307666705,0.19195532,pos,ns,0.716799846,-0.0000706,0.0000391,-1.807418939,0.071666259,neg,ns,0.045911505,Fbxo33,Fbxo33_fiveUTR,12,59219444,59219493,59219444,59219445,50,+,CGGTCGGGGCTGCGGCACTGACAAGAACAACAACATCAATGACTAGGAAG,Promoter (<=1kb),12,59200655,59219725,19071,2,Fbxo33-201,232,Fbxo33-201;Fbxo33-203,Fbxo33;Fbxo33,0;-643,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,11,70611,ENSMUSG00000035329,conserved gene but different region,12,59218669,59219457,789,*,789,92,0.70468948,0.946289826,0.116603295,1.43E-76,CpGisland,TRUE,U1,Pr-A
22576,cg14365488,0.0000415,0.0000165,2.522029454,0.012168664,gain,ns,-0.0000118,0.000028,-0.42311359,0.67250576,neg,ns,0.052659469,0.008193213,6.427206314,4.90E-10,pos,ns,9.309925568,-0.001219074,0.000281764,-4.326579423,0.0000205,neg,ns,0.707896037,Rnf10,Rnf10_Exon,5,115257076,115257125,115257076,115257077,50,-,CGGGGTTCAAAAGTGAAATTCAACAAGTGGTTCAGGTTGATCTTCTTAGG,"Exon (Rnf10-203/Rnf10, exon 3 of 17)",5,115241412,115272898,31487,2,Rnf10-203,15773,Rnf10-203;Rnf10-201;Rnf10-202;Rnf10-206;Rnf10-205;Rnf10-207;Rnf10-211,Rnf10;Rnf10;Rnf10;Rnf10;Rnf10;Rnf10;Rnf10,0;0;0;0;-1449;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,50849,ENSMUSG00000041740,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20082,cg25098139,0.00002,0.00000857,2.333782919,0.020245966,gain,ns,-0.00000616,0.0000146,-0.423088583,0.672523985,neg,ns,-0.001839025,0.004266338,-0.431054655,0.66672821,neg,ns,0.176051169,-0.00010378,0.000146719,-0.707337404,0.479888223,neg,ns,0.657554212,Pcbp2,Pcbp2_Exon,15,102485920,102485969,102485968,102485969,50,+,GAGACTGAAATCCTCTATTTATCCACAGGACAGGTACAGCACAGGCAGCG,"Exon (Pcbp2-220/Pcbp2, exon 9 of 12)",15,102470539,102488880,18342,1,Pcbp2-220,15381,Pcbp2-220;Pcbp2-201;Pcbp2-205;Pcbp2-212;Pcbp2-231;Pcbp2-214;Pcbp2-216;Pcbp2-203;Pcbp2-208;Pcbp2-217;Pcbp2-202;Pcbp2-218;Pcbp2-206;Pcbp2-227;Pcbp2-219;Pcbp2-213;Pcbp2-221;Pcbp2-223;Pcbp2-207;Pcbp2-224;Pcbp2-228;Pcbp2-211;Pcbp2-226;Pcbp2-230;Pcbp2-210;Pcbp2-204;Pcbp2-215;Pcbp2-222;Pcbp2-229;Pcbp2-225,Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2,0;0;0;0;0;0;0;0;14852;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,8,18521,ENSMUSG00000056851,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1645,cg14783285,0.0000269,0.0000053,5.078928833,0.000000657,gain,yes,-0.00000381,0.00000901,-0.423070729,0.672536997,neg,ns,0.00535744,0.002639445,2.029760288,0.043234709,pos,ns,1.364167455,-0.000104638,0.0000908,-1.152781863,0.249888055,neg,ns,0.059989205,Zfp521,Zfp521_fiveUTR,18,13972608,13972657,13972608,13972609,50,+,CGCAGGGACTCGCTCTGTACGTAATCACTGAGGAAATCATTGTCAGCCTG,Promoter (<=1kb),18,13846772,13972648,125877,2,Zfp521-203,0,Zfp521-201;Zfp521-204;Zfp521-203;Zfp521-202,Zfp521;Zfp521;Zfp521;Zfp521,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,81,225207,ENSMUSG00000024420,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
925,cg24634325,-0.0000847,0.0000109,-7.786903819,1.04E-13,loss,yes,0.00000782,0.0000185,0.422939666,0.672632519,pos,ns,-0.015797884,0.005416206,-2.916780656,0.00379484,neg,ns,2.420806569,0.000381302,0.000186263,2.047115361,0.041489534,pos,ns,0.861155497,Gata3,Gata3_Intron,2,9873020,9873069,9873020,9873021,50,+,CGCGTGCAGCAGTCTGAAAATAATTGGATTAGCTAAAACATATCAACTAA,"Intron (Gata3-201/Gata3, intron 3 of 5)",2,9857078,9878600,21523,2,Gata3-201,5531,Gata3-201;Gata3-205;Gata3-206;Gata3-202;Gata3-204;Gata3-203,Gata3;Gata3;Gata3;Gata3;Gata3;Gata3,0;0;2330;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,21,14462,ENSMUSG00000015619,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5877,cg21173104,0.000000499,0.00000176,0.282883163,0.777455198,gain,ns,0.00000127,0.000003,0.422828125,0.672713816,pos,ns,0.000128783,0.000878403,0.146609906,0.883535229,pos,ns,0.053776129,0.00000949,0.0000302,0.314105153,0.753652448,pos,ns,0.040490146,Slit3,Slit3_Intron,11,35122547,35122596,35122595,35122596,50,-,AGTTTTAGCCCCAATTGTGCAACCAAATATTTACTTTTCATATGTCAACG,"Intron (Slit3-201/Slit3, intron 1 of 35)",11,35121224,35708507,587284,1,Slit3-201,1323,Slit3-201,Slit3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,21,20564,ENSMUSG00000056427,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
11978,cg08545950,0.000000259,0.00000121,0.213611531,0.830990427,gain,ns,0.000000871,0.00000206,0.422775671,0.672752049,pos,ns,0.000755227,0.000603862,1.250661678,0.212001076,pos,ns,0.673661935,-0.0000373,0.0000208,-1.794664492,0.073681309,neg,ns,0.973226006,Lrfn5,Lrfn5_Exon,12,61843407,61843456,61843455,61843456,50,+,TCACTTCCCTCACTGCCACAAGAGTCGTGGGTTGCATCCAGTTTACTACG,"Exon (Lrfn5-201/Lrfn5, exon 4 of 4)",12,61523948,61845258,321311,1,Lrfn5-201,319459,Lrfn5-201;Lrfn5-202,Lrfn5;Lrfn5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,4,238205,ENSMUSG00000035653,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2898,cg25697669,0.0000111,0.00000487,2.277505333,0.023436821,gain,ns,0.00000349,0.00000827,0.422734326,0.672782186,pos,ns,0.00271401,0.002421967,1.120581002,0.263333614,pos,ns,0.5794937,0.0000512,0.0000833,0.61523921,0.538848132,pos,ns,0.893567495,Lrmda,Lrmda_Intron,14,22036926,22036975,22036974,22036975,50,+,AGGCCCAAACACATTTCTGCATTAAATCCATTTAGTATGTGCATTATTCG,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,17214,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206,Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14097,cg22470076,0.0000892,0.00000861,10.36218235,8.44E-22,gain,yes,0.00000618,0.0000146,0.42272132,0.672791665,pos,ns,0.013384268,0.004283131,3.124879694,0.001947068,pos,ns,2.710618972,-0.0000131,0.000147297,-0.088916464,0.929205714,neg,ns,0.196574296,Evx2,Evx2_Promoter,2,74659932,74659981,74659980,74659981,50,-,ATTACGCTCTCAGTTTGCTAGGTTGCCCCTTAGGTCCTAATCATGCAGCG,Promoter (<=1kb),2,74652991,74659557,6567,2,Evx2-201,-424,Evx2-201;Evx2-202,Evx2;Evx2,0;-513,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,9,35,14029,ENSMUSG00000001815,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
760,cg26447839,-0.0000328,0.00000649,-5.05808274,0.000000726,loss,yes,-0.00000466,0.000011,-0.42270816,0.672801258,neg,ns,-0.004430353,0.003230797,-1.371287832,0.171277049,neg,ns,0.766300828,-0.000109416,0.000111107,-0.984780238,0.325499998,neg,ns,0.949337173,Arglu1,Arglu1_threeUTR,8,8667289,8667338,8667337,8667338,50,+,CTGGACTTCCCCTTGCCCAGGATAATTTTTTGTTCTTCTTTTTGTTGACG,3' UTR,8,8665075,8690521,25447,2,Arglu1-201,23183,Arglu1-201;Arglu1-204;Arglu1-203;Arglu1-202,Arglu1;Arglu1;Arglu1;Arglu1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,7,234023,ENSMUSG00000040459,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11349,cg01857866,0.000000119,0.000000622,0.190653133,0.848922154,gain,ns,-0.000000447,0.00000106,-0.422694149,0.672811471,neg,ns,-0.000499552,0.00030956,-1.613745174,0.107600126,neg,ns,0.96818722,0.00000882,0.0000106,0.828575391,0.407982193,pos,ns,0.988380205,Clk3,Clk3_Exon,9,57758611,57758660,57758611,57758612,50,+,CGAAAGGTGGCTGTACATCGCTCTTGGAGCCAATCGCCGATCCGGCACAC,"Exon (Clk3-207/Clk3, exon 3 of 12)",9,57750624,57765103,14480,2,Clk3-207,6443,Clk3-207;Clk3-201;Clk3-205;Clk3-203;Clk3-206;Clk3-209;Clk3-208;Clk3-204,Clk3;Clk3;Clk3;Clk3;Clk3;Clk3;Clk3;Clk3,0;0;0;0;-3290;0;5648;6193,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,14,102414,ENSMUSG00000032316,conserved gene and region,9,57758611,57758779,169,*,169,14,0.615384615,0.908602151,0.082840237,7.36E-10,CpGisland,TRUE,U12,Tr-I
14919,cg24393114,-0.0000454,0.00000963,-4.712075947,0.00000371,loss,ns,0.00000691,0.0000164,0.422531249,0.672930216,pos,ns,-0.010552533,0.004793164,-2.201579833,0.028431481,neg,ns,1.546200517,0.000147829,0.000164837,0.896822894,0.370509348,pos,ns,0.812385721,Gm48959,Gm48959_Intergenic_upstream,14,78159796,78159845,78159796,78159797,50,+,CGTTGCTTAATATCTGTAATCAGTTTTAGTCTGATGCAATTCTCAAAATG,Distal Intergenic,14,78199373,78199769,397,1,Gm48959-201,-39528,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15624,cg18190885,-0.0000286,0.00000957,-2.992068294,0.00299346,loss,ns,-0.00000687,0.0000163,-0.422513246,0.672943339,neg,ns,-0.015820075,0.0047632,-3.321312634,0.001003028,neg,ns,2.998686864,0.000412646,0.000163806,2.519113432,0.012267821,pos,ns,0.638626664,Nfib,Nfib_Intron,4,82304761,82304810,82304809,82304810,50,-,AAAAAACAAACAGCCTTCTTCACGCTTCGGCTCCCCTATCGATTCAAACG,"Intron (Nfib-201/Nfib, intron 11 of 11)",4,82290173,82505308,215136,2,Nfib-201,200498,Nfib-201;Nfib-203;Nfib-202;Nfib-205;Nfib-206;Nfib-204,Nfib;Nfib;Nfib;Nfib;Nfib;Nfib,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,66,18028,ENSMUSG00000008575,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
7414,cg04585382,0.0000724,0.0000117,6.178123645,2.04E-09,gain,yes,-0.00000841,0.0000199,-0.422493788,0.672957524,neg,ns,-0.011101394,0.005833593,-1.903011632,0.057965255,neg,ns,1.236832251,0.000703776,0.000200617,3.508059935,0.000518173,pos,ns,0.365056017,Nr2e1,Nr2e1_Intron,10,42578483,42578532,42578531,42578532,50,+,TTTCCTTGAGCAAGTGTCAGTTTCCTACAATGAGCATTATTCATGCACCG,"Intron (Nr2e1-201/Nr2e1, intron 1 of 8)",10,42561963,42583632,21670,2,Nr2e1-201,5100,Nr2e1-201;Nr2e1-203;Nr2e1-204,Nr2e1;Nr2e1;Nr2e1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,11,21907,ENSMUSG00000019803,conserved gene and region,10,42578531,42578638,108,*,108,9,0.583333333,1,0.083333333,0.00000176,CpGisland,TRUE,U13,Hc-P
14812,cg13927500,0.0000665,0.0000158,4.216010281,0.0000327,gain,ns,-0.0000113,0.0000268,-0.422485743,0.672963388,neg,ns,0.014945742,0.007852452,1.903321673,0.057924655,pos,ns,1.237136548,0.00025325,0.000270045,0.937804404,0.349074994,pos,ns,0.389353974,Myo18a,Myo18a_Intergenic_downstream,11,77867787,77867836,77867835,77867836,50,+,AGCTAGGCTGCGCAGATGCCGCTCTTTAATCTCTCCTGATAAATGAATCG,Distal Intergenic,11,77857479,77865076,7598,1,Myo18a-216,10308,Myo18a-208;Myo18a-209;Myo18a-207;Myo18a-201;Myo18a-203;Myo18a-222;Myo18a-223;Myo18a-211;Myo18a-205;Myo18a-210;Myo18a-224;Myo18a-202;Myo18a-220;Myo18a-221;Myo18a-215;Myo18a-216,Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,18,360013,ENSMUSG00000000631,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4024,cg06350721,0.0000956,0.0000185,5.155013106,0.000000453,gain,yes,0.0000133,0.0000315,0.422435199,0.673000235,pos,ns,0.030483126,0.009232341,3.301776524,0.001072978,pos,ns,2.969409082,-0.00079758,0.000317499,-2.512067608,0.012510385,neg,ns,0.276430186,Gm50479,Gm50479_Intergenic_downstream,8,26507635,26507684,26507683,26507684,50,-,AATTTTTGGGCCTGTCAGCCCAGTTGATGAGTTGGGCGGCTGTCAGCCCG,Distal Intergenic,8,26237222,26237407,186,1,Gm50479-201,270462,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,21,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24203,cg00092013,-0.00000168,0.0000013,-1.289356654,0.198235308,loss,ns,-0.000000933,0.00000221,-0.422406942,0.673020834,neg,ns,-0.001256665,0.000646752,-1.943040226,0.052916345,neg,ns,1.276410157,0.0000161,0.0000222,0.723474383,0.46993403,pos,ns,0.965691048,Macf1,Macf1_Exon,4,123397266,123397315,123397266,123397267,50,+,CGGTCTTGAATTTCACTGTATCGGGCCTGCAATGAGTCTATCTTTTCTGA,"Exon (Macf1-215/Macf1, exon 55 of 90)",4,123349633,123684360,334728,2,Macf1-203,287045,Macf1-203;Macf1-209;Macf1-215;Macf1-218;Macf1-217;Macf1-201;Macf1-205;Macf1-202;Macf1-206;Macf1-208,Macf1;Macf1;Macf1;Macf1;Macf1;Macf1;Macf1;Macf1;Macf1;Macf1,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,16,11426,ENSMUSG00000028649,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
546,cg14801026,0.000058,0.00000687,8.440106695,1.23E-15,gain,yes,0.00000493,0.0000117,0.422364879,0.673051498,pos,ns,0.013923609,0.003418523,4.072989962,0.000059,pos,ns,4.229190306,-0.000312109,0.000117563,-2.654830421,0.008344594,neg,ns,0.160659578,Dlx6,Dlx6_Exon,6,6865143,6865192,6865143,6865144,50,+,CGGAAGCCTCGGACCATTTATTCCAGCCTGCAGCTCCAGGCTTTAAACCA,"Exon (Dlx6-203/Dlx6, exon 2 of 4)",6,6863334,6867970,4637,1,Dlx6-203,1809,Dlx6-203;Dlx6-202;Dlx6-201;Dlx6-204,Dlx6;Dlx6;Dlx6;Dlx6,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,36,13396,ENSMUSG00000029754,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
15414,cg08935027,-0.00000069,0.00000154,-0.448700235,0.653961396,loss,ns,-0.0000011,0.00000261,-0.422262332,0.673126258,neg,ns,0.000613293,0.000765732,0.800923618,0.42378928,pos,ns,0.372850033,-0.0000154,0.0000263,-0.584866373,0.559063007,neg,ns,0.957831754,Atp9b,Atp9b_threeUTR,18,80836341,80836390,80836389,80836390,50,+,TCAATCTAGCCTACCTTATTTTTTGGATTGGATGTGTTCATTACACTTCG,3' UTR,18,80734141,80933983,199843,2,Atp9b-201,97593,Atp9b-201;Atp9b-212;Atp9b-209;Atp9b-207;Atp9b-213;Atp9b-202;Atp9b-204,Atp9b;Atp9b;Atp9b;Atp9b;Atp9b;Atp9b;Atp9b,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,4,50771,ENSMUSG00000024566,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2534,cg04198597,-0.00000406,0.00000251,-1.616342891,0.107037354,loss,ns,-0.0000018,0.00000427,-0.422225867,0.673152843,neg,ns,0.000727708,0.00125123,0.58159376,0.561263006,pos,ns,0.250833582,-0.000046,0.000043,-1.070147979,0.285385212,neg,ns,0.940311648,Bclaf1,Bclaf1_Exon,10,20334502,20334551,20334502,20334503,50,+,CGAATTAGAGGCAGAGGAAGAGCCAGAGGAGTTTTTGCTGGGACAAATAC,"Exon (Bclaf1-201/Bclaf1, exon 11 of 13)",10,20312469,20342501,30033,1,Bclaf1-202,22033,Bclaf1-202;Bclaf1-204;Bclaf1-201;Bclaf1-208;Bclaf1-203;Bclaf1-210;Bclaf1-207;Bclaf1-209;Bclaf1-206,Bclaf1;Bclaf1;Bclaf1;Bclaf1;Bclaf1;Bclaf1;Bclaf1;Bclaf1;Bclaf1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,7,72567,ENSMUSG00000037608,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9739,cg06139815,-0.0000022,0.000000845,-2.608518814,0.009534077,loss,ns,-0.000000606,0.00000144,-0.422204233,0.673168616,neg,ns,-0.000392636,0.000420634,-0.933440276,0.351319158,neg,ns,0.454298167,0.00000678,0.0000145,0.468927379,0.639451143,pos,ns,0.025878531,Bbx,Bbx_Intron,16,50430699,50430748,50430747,50430748,50,+,AGCTTTTTGCATCGTTTCGTTTTACCTTCCTCATTTAGCAGAAATGATCG,"Intron (Bbx-208/Bbx, intron 1 of 16)",16,50191844,50432390,240547,2,Bbx-208,1642,Bbx-208;Bbx-201;Bbx-203;Bbx-202;Bbx-204;Bbx-207;Bbx-209;Bbx-206,Bbx;Bbx;Bbx;Bbx;Bbx;Bbx;Bbx;Bbx,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,10,70508,ENSMUSG00000022641,conserved gene but different region,16,50430682,50430847,166,*,166,11,0.421686747,1.490612245,0.06626506,0.000000769,CpGisland,TRUE,NA,NRS
14772,cg02050559,3.17E-08,0.00000101,0.031334136,0.975023231,gain,ns,0.000000725,0.00000172,0.422096466,0.673247187,pos,ns,0.000131892,0.000503457,0.261972087,0.793516948,pos,ns,0.100443793,-0.0000211,0.0000173,-1.217065087,0.224505166,neg,ns,0.982765388,Gm11146,Gm11146_Exon,16,77598944,77598993,77598944,77598945,50,+,CGTAGATCCGATCTTGTGGTGAAGTGGACCGCACAAGCTCGCTTCTATGG,"Exon (Mir99a-201/Mir99a-201, exon 1 of 1)",16,77588578,77602094,13517,2,Gm11146-201,3101,Gm11146-201,Gm11146,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,21,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6058,cg24955520,0.0000138,0.00000238,5.814298215,1.51E-08,gain,yes,0.00000171,0.00000404,0.422074336,0.673263322,pos,ns,0.001098877,0.001184107,0.928021705,0.3541183,pos,ns,0.45085163,-0.0000491,0.0000407,-1.206316035,0.228615464,neg,ns,0.01940177,Psd2,Psd2_Intergenic_upstream,18,35920197,35920246,35920197,35920198,50,+,CGCTGGCCCCACCGGGCCCCCCAGCCAGCGCGGGGATGTTTTCCAATACG,Distal Intergenic,18,35964830,36014712,49883,1,Psd2-201,-44584,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,24,29,74002,ENSMUSG00000024347,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
9150,cg00201390,-0.0000288,0.00000808,-3.561431487,0.000426764,loss,ns,0.00000579,0.0000137,0.422070008,0.673266478,pos,ns,-0.001736271,0.004021056,-0.431794826,0.6661907,neg,ns,0.176401434,-0.000242658,0.000138284,-1.754779595,0.080284903,neg,ns,0.855280201,Rpl23a-ps5,Rpl23a-ps5_Intergenic_downstream,3,47227524,47227573,47227572,47227573,50,-,GCTAATTTTAACAATTTCAGACATCTGTGACAGAATTTCTAAACTACCCG,Distal Intergenic,3,47230538,47231003,466,2,Rpl23a-ps5-201,3479,Rpl23a-ps5-201,Rpl23a-ps5,3430,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,383850,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25379,cg02675394,0.00000583,0.00000209,2.7856456,0.005671051,gain,ns,0.0000015,0.00000356,0.421936239,0.673364013,pos,ns,0.001538619,0.001042016,1.476578034,0.140803868,pos,ns,0.851385415,-0.0000564,0.0000358,-1.573497083,0.116623767,neg,ns,0.020961496,Id3,Id3_Promoter,4,136140529,136140578,136140529,136140530,50,+,CGTCCCACCCTGGCGCCAGGCTGTCTGGGGCTGAGTCTTAGATCAACACA,Promoter (2-3kb),4,136143497,136145392,1896,1,Id3-201,-2919,Id3-201;Id3-203;Id3-202,Id3;Id3;Id3,-2919;-3286;-4396,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,9,9,15903,ENSMUSG00000007872,conserved gene and region,4,136140358,136140543,186,*,186,17,0.661290323,0.836065574,0.09139785,1.32E-12,CpGisland,TRUE,NA,NRS
11414,cg05351583,0.0000328,0.00000936,3.50691667,0.000520318,gain,ns,0.00000671,0.0000159,0.421838185,0.67343551,pos,ns,0.00148312,0.004659129,0.318325507,0.750452383,pos,ns,0.124676859,-0.0000496,0.000160227,-0.309452989,0.757184864,neg,ns,0.159466631,Ccdc33,Ccdc33_Intron,9,58051788,58051837,58051836,58051837,50,-,CCAAGAGACAATAAATCGACAAACACTTAATCTCTCTGCAAATTGAAACG,"Intron (Ccdc33-201/Ccdc33, intron 11 of 18)",9,58028677,58102297,73621,2,Ccdc33-201,50460,Ccdc33-201;Ccdc33-203;Ccdc33-210;Ccdc33-204,Ccdc33;Ccdc33;Ccdc33;Ccdc33,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,8,382077,ENSMUSG00000037716,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13191,cg11217840,0.0000227,0.00000467,4.847236916,0.00000198,gain,ns,-0.00000335,0.00000794,-0.421773814,0.673482449,neg,ns,0.000717698,0.002326374,0.308504973,0.757905326,pos,ns,0.120385041,-0.0000788,0.00008,-0.985515165,0.325139636,neg,ns,0.148985268,Ikzf2,Ikzf2_fiveUTR,1,69687222,69687271,69687270,69687271,50,-,CCATCTTCAGCGAGGAGCAGGGTTAGCCCGGGACAGCTGGTCAAACCCCG,Promoter (<=1kb),1,69538582,69687245,148664,2,Ikzf2-202,0,Ikzf2-201;Ikzf2-207;Ikzf2-202;Ikzf2-204;Ikzf2-208;Ikzf2-209;Ikzf2-206;Ikzf2-203;Ikzf2-205,Ikzf2;Ikzf2;Ikzf2;Ikzf2;Ikzf2;Ikzf2;Ikzf2;Ikzf2;Ikzf2,0;0;0;0;0;0;-1922;-2686;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,14,22779,ENSMUSG00000025997,conserved gene but different region,1,69687232,69687830,599,*,599,99,0.777963272,1.094760744,0.165275459,2.69E-100,CpGisland,TRUE,NA,NRS
22663,cg20369280,0.000000164,0.00000144,0.114219456,0.909137769,gain,ns,0.00000103,0.00000244,0.421764686,0.673489106,pos,ns,0.000288035,0.000715272,0.402693061,0.687451592,pos,ns,0.162757878,0.0000282,0.0000246,1.146122477,0.252628409,pos,ns,0.958265646,BC052040,BC052040_Intron,2,115643920,115643969,115643920,115643921,50,+,CGCAGCAGCACCGCCATTTGTCAAAGTCAACCTTCTGATTGCTTTGGACC,"Intron (BC052040-203/BC052040, intron 5 of 10)",2,115581716,115778768,197053,1,BC052040-203,62204,BC052040-203;BC052040-201;BC052040-202,BC052040;BC052040;BC052040,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,37,49,399568,ENSMUSG00000040282,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7976,cg23046555,0.0000431,0.0000043,10.03420953,1.06E-20,gain,yes,-0.00000308,0.0000073,-0.421544221,0.673649877,neg,ns,0.008190704,0.00213878,3.829614897,0.00015532,pos,ns,3.808772997,-0.000151122,0.0000736,-2.054620538,0.040753608,neg,ns,0.072795789,Pax2,Pax2_Intergenic_upstream,19,44671352,44671401,44671400,44671401,50,-,TAAATAATAACTTACAAACAGGATTAGTTGTAAAGTCACGCTCCGGCGCG,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-84693,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,19,44671390,44671489,100,*,100,13,0.74,1.06122449,0.13,8.74E-12,CpGisland,TRUE,U13,Hc-P
26753,cg06139548,0.0000294,0.00000999,2.943042636,0.003495376,gain,ns,-0.00000715,0.000017,-0.421443901,0.673723039,neg,ns,0.008353838,0.004970831,1.680571745,0.093853412,pos,ns,1.027549934,-0.0000958,0.000170946,-0.560538155,0.575517303,neg,ns,0.266964126,Scrt2,Scrt2_Intergenic_upstream,2,152050425,152050474,152050425,152050426,50,+,CGTGTTCGGCAATGCCCAGGGACCAGGACTGCCGCCCTATTACCAAAAAT,Distal Intergenic,2,152081529,152095802,14274,1,Scrt2-201,-31055,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,10,545474,ENSMUSG00000060257,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
27698,cg26521186,0.00000156,0.00000314,0.494926414,0.621002659,gain,ns,-0.00000225,0.00000534,-0.42135958,0.673784536,neg,ns,-0.002290531,0.001564214,-1.464333437,0.144116197,neg,ns,0.841287206,0.0000856,0.0000538,1.590825281,0.11266812,pos,ns,0.930556578,Zbtb18,Zbtb18_Exon,1,177447160,177447209,177447208,177447209,50,+,CAGGGTTTTCTTTGTGACTGCACTGTTCTGGTGGGAGATGCCCAGTTCCG,"Exon (Zbtb18-209/Zbtb18, exon 2 of 2)",1,177442351,177447237,4887,1,Zbtb18-209,4809,Zbtb18-209;Zbtb18-211;Zbtb18-208;Zbtb18-203;Zbtb18-202;Zbtb18-204;Zbtb18-206;Zbtb18-210;Zbtb18-205;Zbtb18-212;Zbtb18-207;Zbtb18-201,Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,22,30928,ENSMUSG00000063659,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8597,cg01630982,0.0000171,0.00000399,4.277647135,0.0000252,gain,ns,-0.00000285,0.00000677,-0.421324511,0.673810113,neg,ns,0.003963539,0.001983837,1.997915505,0.046599219,pos,ns,1.331621362,-0.000137662,0.0000682,-2.017800435,0.044473307,neg,ns,0.097058126,Dscaml1,Dscaml1_fiveUTR,9,45430423,45430472,45430423,45430424,50,-,CGGCCACAGGACCACCTCCCCGGAGAATAGGGCCTCTTTATGGCATGTGG,5' UTR,9,45426628,45571224,144597,1,Dscaml1-208,3795,Dscaml1-208;Dscaml1-209;Dscaml1-202;Dscaml1-206;Dscaml1-211;Dscaml1-201;Dscaml1-210,Dscaml1;Dscaml1;Dscaml1;Dscaml1;Dscaml1;Dscaml1;Dscaml1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,32,114873,ENSMUSG00000032087,conserved gene and region,9,45430237,45430444,208,*,208,27,0.793269231,0.87394958,0.129807692,3.26E-24,CpGisland,TRUE,U13,Hc-P
9262,cg07588430,-0.00000099,0.000000911,-1.087066493,0.277851923,loss,ns,-0.000000652,0.00000155,-0.42131799,0.673814869,neg,ns,-0.000898045,0.000453486,-1.980314044,0.048552108,neg,ns,1.313791906,0.0000192,0.0000156,1.22811946,0.220333749,pos,ns,0.985372806,Foxp4,Foxp4_Intron,17,47872420,47872469,47872468,47872469,50,+,TTAAATCCTGTGTATTTTTCCGACTCGCTTGCTAATCCACGAGGGAGGCG,"Intron (Foxp4-204/Foxp4, intron 13 of 16)",17,47867133,47924645,57513,2,Foxp4-204,52176,Foxp4-204;Foxp4-203;Foxp4-201;Foxp4-202,Foxp4;Foxp4;Foxp4;Foxp4,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,25,74123,ENSMUSG00000023991,conserved gene and region,17,47872440,47872721,282,*,282,26,0.563829787,1.163809524,0.092198582,3.73E-19,CpGisland,TRUE,U10,Tr-S
11224,cg25787117,-0.0000191,0.00000566,-3.37683248,0.00082671,loss,ns,-0.00000405,0.00000961,-0.42115015,0.673937286,neg,ns,0.000463523,0.002815535,0.164630694,0.869341965,pos,ns,0.060809356,-0.000159099,0.0000968,-1.643145842,0.101366604,neg,ns,0.940345278,Epb41l4b,Epb41l4b_Exon,4,57077182,57077231,57077230,57077231,50,+,TACCCCATACATTTCCAGCCACTTCGCTTTATTCAGATAGGAGAGTTCCG,"Exon (Epb41l4b-203/Epb41l4b, exon 8 of 26)",4,56991972,57143437,151466,2,Epb41l4b-203,66206,Epb41l4b-203;Epb41l4b-201;Epb41l4b-206;Epb41l4b-205,Epb41l4b;Epb41l4b;Epb41l4b;Epb41l4b,0;0;0;60961,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,54357,ENSMUSG00000028434,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21672,cg03488214,0.0000194,0.00000732,2.654213875,0.008359511,gain,ns,-0.00000523,0.0000124,-0.421052672,0.674008387,neg,ns,0.02620044,0.0036419,7.194167332,4.75E-12,pos,yes,11.3232225,-0.001012604,0.000125245,-8.08500542,1.41E-14,neg,yes,0.826005433,Stxbp3,Stxbp3_Exon,3,108809919,108809968,108809967,108809968,50,-,GCCTGAAAGGTCAGTTCATGCAGGACAGTGGACACAGGATCAAAGCCACG,"Exon (Stxbp3-201/Stxbp3, exon 9 of 19)",3,108793176,108840511,47336,2,Stxbp3-201,30543,Stxbp3-201;Stxbp3-206;Stxbp3-207,Stxbp3;Stxbp3;Stxbp3,0;-4188;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,20912,ENSMUSG00000027882,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14191,cg21732359,0.0000855,0.00000694,12.32131312,1.16E-28,gain,yes,-0.00000496,0.0000118,-0.42104493,0.674014035,neg,ns,0.003262271,0.003454353,0.944394332,0.345703637,pos,ns,0.461296051,-0.000126377,0.000118795,-1.063825047,0.288235914,neg,ns,0.090398176,Hoxd3,Hoxd3_fiveUTR,2,74736505,74736554,74736553,74736554,50,-,GTTTATTGGTAGTTGAACCTCAGCCTGGTTCCGTTCTACCGGGAATTCCG,Promoter (<=1kb),2,74736515,74747915,11401,1,Hoxd3-202,0,Gm28230-201;Hoxd3-203;Hoxd3-205;Hoxd3-202;Hoxd3-201,Gm28230;Hoxd3;Hoxd3;Hoxd3;Hoxd3,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,8,24,15434,ENSMUSG00000079277,conserved gene and region,2,74736406,74736588,183,*,183,19,0.639344262,1.025058962,0.103825137,3.98E-15,CpGisland,TRUE,U13,Hc-P
6849,cg06623662,-0.000019,0.0000123,-1.543685142,0.123684807,loss,ns,-0.0000088,0.0000209,-0.420846081,0.674159086,neg,ns,-0.01583499,0.006125862,-2.584940733,0.010196223,neg,ns,1.991560676,0.000544604,0.000210668,2.585130731,0.010190727,pos,ns,0.310260061,Etv1,Etv1_fiveUTR,12,38780524,38780573,38780572,38780573,50,+,GTTAGGTGCAAAGCAAGTCTCGTTGATCGCCATTGCTAGTTTTGCACACG,5' UTR,12,38779380,38866249,86870,1,Etv1-203,1144,Etv1-203;Etv1-201;Etv1-211;Etv1-207;Etv1-206;Etv1-205;Etv1-212;Etv1-208;Etv1-210;Etv1-204;Etv1-202,Etv1;Etv1;Etv1;Etv1;Etv1;Etv1;Etv1;Etv1;Etv1;Etv1;Etv1,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,8,10,14009,ENSMUSG00000004151,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
7044,cg24495632,0.0000583,0.00000587,9.923655209,2.46E-20,gain,yes,-0.0000042,0.00000998,-0.420826206,0.674173585,neg,ns,0.006551011,0.002923698,2.240659479,0.025756104,pos,ns,1.589119829,0.0000464,0.000100546,0.461559521,0.644720934,pos,ns,0.082447617,Tfap2a,Tfap2a_threeUTR,13,40717105,40717154,40717153,40717154,50,+,GAGGAGAGCCTCACTTTCTGTGCTTCTCCTCTTTGTCACTGCTTTTGGCG,3' UTR,13,40715302,40730443,15142,2,Tfap2a-201,13289,Tfap2a-201;Tfap2a-202;Tfap2a-205;Tfap2a-203;Tfap2a-209;Tfap2a-208;Tfap2a-206;Tfap2a-204,Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,57,21418,ENSMUSG00000021359,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
26998,cg12296664,-0.00000895,0.00000363,-2.462774945,0.014330031,loss,ns,-0.0000026,0.00000617,-0.420686957,0.674275169,neg,ns,-0.000923201,0.001808613,-0.510447036,0.610101584,neg,ns,0.214597847,0.0000246,0.0000622,0.396270522,0.69217809,pos,ns,0.823705854,Ergic3,Ergic3_Exon,2,156011188,156011237,156011188,156011189,50,+,CGAGAGGGCTTCAGCCAGAAGATGCAGGAGCAGAAGAATGAAGGCTGCCA,"Exon (Ergic3-201/Ergic3, exon 6 of 13)",2,156008045,156018279,10235,1,Ergic3-201,3143,6430550D23Rik-203;6430550D23Rik-201;6430550D23Rik-204;6430550D23Rik-208;6430550D23Rik-206;Ergic3-201;Ergic3-202;Ergic3-206;Ergic3-205;Ergic3-210,6430550D23Rik;6430550D23Rik;6430550D23Rik;6430550D23Rik;6430550D23Rik;Ergic3;Ergic3;Ergic3;Ergic3;Ergic3,-3281;-3269;-3265;-3269;-3211;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,66366,ENSMUSG00000005881,conserved gene and region,2,156011125,156011189,65,*,65,7,0.661538462,0.989130435,0.107692308,0.00000802,CpGisland,TRUE,U10,Tr-S
22074,cg13684553,-0.0000296,0.0000136,-2.174277706,0.030440399,loss,ns,0.00000974,0.0000231,0.420683376,0.674277782,pos,ns,0.000953519,0.006781522,0.140605516,0.888272908,pos,ns,0.051453584,-0.000515623,0.000233216,-2.210926403,0.027770633,neg,ns,0.339338019,Wdr20,Wdr20_fiveUTR,12,110737985,110738034,110738033,110738034,50,+,GCGTGATCCGGGCACTTAGGGCAGGATGAACGCTGCTTTCCAAGATGGCG,Promoter (<=1kb),12,110737989,110740240,2252,1,Wdr20-203,0,Wdr20-205;Wdr20-204;Wdr20-203;Wdr20-201;Wdr20-202;Wdr20-207,Wdr20;Wdr20;Wdr20;Wdr20;Wdr20;Wdr20,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,8,69641,ENSMUSG00000037957,conserved gene but different region,12,110737489,110738785,1297,*,1297,129,0.68080185,0.867167335,0.099460293,3.23E-97,CpGisland,TRUE,U1,Pr-A
6431,cg12593482,0.0000327,0.000016,2.047148017,0.041486307,gain,ns,-0.0000114,0.0000271,-0.420558276,0.674369049,neg,ns,0.013747885,0.007938483,1.731802506,0.084303507,pos,ns,1.074154356,-0.00056089,0.000273004,-2.054515413,0.040763839,neg,ns,0.373706791,Zfp536,Zfp536_Intergenic_downstream,7,37215830,37215879,37215878,37215879,50,-,TTTACCTTGTTTTCTTAGCCATTTGTGACACAGTACAACAGTTCCCATCG,Distal Intergenic,7,37472135,37479986,7852,2,Zfp536-204,264156,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,112,243937,ENSMUSG00000043456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
13096,cg11082761,0.0000368,0.0000145,2.541832659,0.011513944,gain,ns,-0.0000103,0.0000246,-0.420287149,0.674566868,neg,ns,-0.001414625,0.007199266,-0.196495784,0.844350886,neg,ns,0.073477037,0.000152747,0.000247582,0.616953935,0.537717958,pos,ns,0.09052835,Kdm6b,Kdm6b_Promoter,11,69416179,69416228,69416179,69416180,50,-,CGTCCCTGAGTCCCGGAGTCAAACAAAGAACTGTAGCAGGCTCTCCCCAA,Promoter (2-3kb),11,69398508,69413675,15168,2,Kdm6b-201,-2553,Dnah2-201;Dnah2-202;Kdm6b-201,Dnah2;Dnah2;Kdm6b,0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,8,216850,ENSMUSG00000018476,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
25371,cg04025581,-0.000000317,0.00000366,-0.086586999,0.9310557,loss,ns,-0.00000261,0.00000622,-0.420061798,0.674731305,neg,ns,-0.001920776,0.001822363,-1.054003118,0.292702289,neg,ns,0.533573882,0.0000279,0.0000627,0.445294126,0.656417998,pos,ns,0.913948849,Cacna1s,Cacna1s_Exon,1,136084265,136084314,136084313,136084314,50,+,AAGATGTACGGGCTGGGCCTGCGCCAGTACTTCATGTCTATCTTCAACCG,"Exon (Cacna1s-204/Cacna1s, exon 11 of 44)",1,136052750,136119530,66781,1,Cacna1s-204,31515,Cacna1s-204;Cacna1s-202;Cacna1s-201;Cacna1s-206,Cacna1s;Cacna1s;Cacna1s;Cacna1s,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,12292,ENSMUSG00000026407,conserved gene and region,1,136084226,136084413,188,*,188,13,0.595744681,0.780332056,0.069148936,3.19E-08,CpGisland,TRUE,U11,Tr-P
24216,cg12792157,-0.00000673,0.00000148,-4.538977586,0.0000081,loss,ns,0.00000106,0.00000252,0.420060843,0.674732001,pos,ns,-0.0000449,0.000737901,-0.060889213,0.951486676,neg,ns,0.021597289,-0.000011,0.0000254,-0.434803687,0.664007449,neg,ns,0.048544508,Mycbp,Mycbp_fiveUTR,4,123905045,123905094,123905045,123905046,50,+,CGCCAGCTACGCCGCTGCCGCTGTCACTATGGCCCATTACAAAGTGAGGG,Promoter (<=1kb),4,123904832,123912269,7438,1,Mycbp-201,213,D130007C19Rik-201;Gm12903-201;Mycbp-201;Mycbp-202;Mycbp-204;Mycbp-203,D130007C19Rik;Gm12903;Mycbp;Mycbp;Mycbp;Mycbp,-1411;2623;0;0;0;-42,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,1,56309,ENSMUSG00000028647,mapped to different genes,4,123904771,123905058,288,*,288,36,0.690972222,1.054945055,0.125,1.70E-31,CpGisland,TRUE,U1,Pr-A
7388,cg03084148,-0.00000265,0.0000028,-0.946527772,0.344616668,loss,ns,0.000002,0.00000476,0.420019005,0.674762532,pos,ns,0.004232259,0.001393453,3.037245852,0.002590345,pos,ns,2.586642373,-0.000155968,0.0000479,-3.254714437,0.001260525,neg,ns,0.931866111,Tcerg1,Tcerg1_Exon,18,42523917,42523966,42523917,42523918,50,+,CGTGAATCTGCATGGACCAAGCCAGATGGAGTTAAGGTTATTCAGCAATC,Promoter (<=1kb),18,42523939,42536289,12351,1,Tcerg1-208,0,Tcerg1-209;Tcerg1-203;Tcerg1-201;Tcerg1-202;Tcerg1-208,Tcerg1;Tcerg1;Tcerg1;Tcerg1;Tcerg1,0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,12,56070,ENSMUSG00000024498,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8963,cg16177352,0.0000209,0.0000113,1.844937386,0.066000378,gain,ns,-0.00000807,0.0000192,-0.419835127,0.674896721,neg,ns,0.00154158,0.005634391,0.273601921,0.784572757,pos,ns,0.105366776,0.000127329,0.000193766,0.657129026,0.511585524,pos,ns,0.826595576,Kcnc1,Kcnc1_Exon,7,46437263,46437312,46437311,46437312,50,-,TACATACAGATCTTTGCAAAGAAAGCCCTGTCATTGCTAAGTATATGCCG,"Exon (Kcnc1-203/Kcnc1, exon 4 of 4)",7,46397648,46438704,41057,1,Kcnc1-203,39615,Kcnc1-201;Kcnc1-203,Kcnc1;Kcnc1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,14,16502,ENSMUSG00000058975,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5007,cg17952647,-0.00000203,0.00000182,-1.118297316,0.264305873,loss,ns,-0.0000013,0.00000309,-0.419753959,0.674955958,neg,ns,0.0010645,0.000904785,1.176522613,0.24028873,pos,ns,0.619266597,-0.0000153,0.0000311,-0.490793415,0.623919804,neg,ns,0.047863128,Foxc1,Foxc1_Promoter,13,31800838,31800887,31800838,31800839,50,+,CGGTTCTTTGGAGGCTCAGTTTTTGGTAATTAAGACTAAGGAGTGTTTAA,Promoter (5-6kb),13,31806633,31812476,5844,1,Foxc1-201,-5746,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,7,17300,ENSMUSG00000050295,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19059,cg19144071,0.0000249,0.00000931,2.672036108,0.007937846,gain,ns,0.00000664,0.0000158,0.419578165,0.675084261,pos,ns,0.008151235,0.00463321,1.759306256,0.079511945,pos,ns,1.099567622,-0.000228544,0.000159336,-1.434357762,0.152478169,neg,ns,0.126532603,Neurod2,Neurod2_Intergenic_downstream,11,98298769,98298818,98298817,98298818,50,-,AGCTAACACAAATTTTTGGCAAGTTTAATAGGAGCTCAAATCTACATTCG,Distal Intergenic,11,98325415,98329648,4234,2,Neurod2-201,30879,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,22,18013,ENSMUSG00000038255,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6169,cg13030894,0.0000406,0.00000814,4.989085584,0.00000101,gain,yes,-0.0000058,0.0000138,-0.419471624,0.675162025,neg,ns,-0.002340914,0.004049987,-0.578005318,0.563680147,neg,ns,0.248967261,0.000273023,0.000139279,1.960267169,0.050859992,pos,ns,0.191884844,Ptgs1,Ptgs1_Intron,2,36203360,36203409,36203408,36203409,50,+,ATTTTCAGAAGGCTCAAGAGCTTTTTTAATCACTACAGTGGCTCATTACG,"Intron (Gm13429-201/Gm13429-201, intron 1 of 1)",2,36230426,36252272,21847,1,Ptgs1-201,-27017,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,5,19224,ENSMUSG00000047250,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
16172,cg27544995,-0.000111031,0.0000131,-8.443861872,1.20E-15,loss,yes,-0.00000937,0.0000223,-0.419420459,0.675199371,neg,ns,0.018448837,0.006544567,2.818954436,0.005127979,pos,ns,2.290053782,-0.000568452,0.000225067,-2.525701259,0.012044822,neg,ns,0.893926392,Bnc2,Bnc2_Intron,4,84551525,84551574,84551573,84551574,50,+,CTTGTCAAGACAAAACTGTCCCTGTTCTTGCCAAAATAATAAAAATGACG,"Intron (Bnc2-201/Bnc2, intron 2 of 7)",4,84275095,84675034,399940,2,Bnc2-201,123460,Bnc2-201;Bnc2-202;Bnc2-214;Bnc2-215;Bnc2-206;Bnc2-211;Bnc2-217;Bnc2-207;Bnc2-203;Bnc2-209;Bnc2-221;Bnc2-204;Bnc2-210,Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,91,242509,ENSMUSG00000028487,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14613,cg03387624,0.00000247,0.00000183,1.351055316,0.177662945,gain,ns,-0.0000013,0.0000031,-0.419371856,0.675234848,neg,ns,0.001030245,0.000909119,1.133233801,0.257991747,pos,ns,0.588394187,-0.00007,0.0000313,-2.239541395,0.025829496,neg,ns,0.0638281,Skor2,Skor2_Promoter,18,76856056,76856105,76856104,76856105,50,+,CCAGCCCTTTAATGTGGAGTGTCAGGGAGACGGTGACGTCACCCTGCCCG,Promoter (<=1kb),18,76856405,76900342,43938,1,Skor2-201,-300,Skor2-201,Skor2,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,4,7,664805,ENSMUSG00000091519,conserved gene and region,18,76856086,76856203,118,*,118,13,0.661016949,1.009210526,0.110169492,8.62E-11,CpGisland,TRUE,U13,Hc-P
24634,cg02001939,-0.00000201,0.00000156,-1.293674594,0.196740904,loss,ns,0.00000111,0.00000264,0.419347303,0.67525277,pos,ns,0.000312091,0.00077446,0.402979394,0.687241156,pos,ns,0.16289084,-0.0000309,0.0000266,-1.161263667,0.246428077,neg,ns,0.964200988,Pard3,Pard3_threeUTR,8,127359694,127359743,127359742,127359743,50,-,GTTCATGCTCCCTCATTCATCATTGTCTCACAGTGATATGGTAAAGCTCG,3' UTR,8,127063893,127611970,548078,1,Pard3-219,295801,Pard3-219;Pard3-202;Pard3-209;Pard3-226;Pard3-211;Pard3-222;Pard3-207;Pard3-201;Pard3-224;Pard3-210;Pard3-216;Pard3-223;Pard3-221;Pard3-213;Pard3-206;Pard3-214;Pard3-212;Pard3-220;Pard3-203;Pard3-217;Pard3-218,Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,8,93742,ENSMUSG00000025812,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26708,cg07236812,0.0000201,0.00000859,2.338651079,0.019988743,gain,ns,-0.00000612,0.0000146,-0.419339438,0.675258511,neg,ns,0.008800988,0.00427401,2.059187628,0.040311243,pos,ns,1.394573815,-0.000323761,0.000146983,-2.202714978,0.028350501,neg,ns,0.729717168,Snph,Snph_Exon,2,151593508,151593557,151593556,151593557,50,-,CAGCAGCCCCGCAGCAGGGAGCTGATGTTGTAGATGGGCTGGCCCTGGCG,"Exon (Snph-202/Snph, exon 6 of 6)",2,151590549,151632549,42001,2,Snph-202,38992,Sdcbp2-201;Snph-202;Snph-201;Snph-203;Snph-204;Snph-206,Sdcbp2;Snph;Snph;Snph;Snph;Snph,20886;0;0;0;0;38914,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,241727,ENSMUSG00000027457,conserved gene and region,2,151593412,151593569,158,*,158,10,0.670886076,0.569780022,0.063291139,0.00000442,CpGisland,TRUE,U15,NS
12623,cg22234098,-0.0000205,0.00000719,-2.856610229,0.004571222,loss,ns,0.00000512,0.0000122,0.418889785,0.675586767,pos,ns,0.011175834,0.003578701,3.122874436,0.001959969,pos,ns,2.707750745,-0.000477224,0.000123071,-3.877625353,0.000128808,neg,ns,0.337718557,Ccnl1,Ccnl1_threeUTR,3,65955238,65955287,65955286,65955287,50,+,ACTCCACATCACCCAGGCTTTGGTAAATGTAGCTGGTCGCTGTATAGTCG,3' UTR,3,65946151,65958162,12012,2,Ccnl1-203,2875,Ccnl1-203;Ccnl1-214;Ccnl1-202;Ccnl1-201;Ccnl1-205;Ccnl1-206;Ccnl1-207;Ccnl1-213;Ccnl1-211;Ccnl1-208;Ccnl1-204;Ccnl1-209;Ccnl1-210,Ccnl1;Ccnl1;Ccnl1;Ccnl1;Ccnl1;Ccnl1;Ccnl1;Ccnl1;Ccnl1;Ccnl1;Ccnl1;Ccnl1;Ccnl1,0;0;0;0;0;0;0;0;0;0;-3370;-2245;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,7,7,56706,ENSMUSG00000027829,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
3046,cg11703627,0.000112658,0.0000127,8.862065663,6.27E-17,gain,yes,0.00000904,0.0000216,0.418804515,0.675649023,pos,ns,0.009719386,0.006327105,1.536150615,0.125521432,pos,ns,0.901282115,0.000245128,0.000217589,1.1265645,0.260797965,pos,ns,0.266692295,Pou3f2,Pou3f2_Intergenic_downstream,4,22478973,22479022,22479021,22479022,50,+,TTTAATGTATACTGGTAATCAGCGATGCGTGCCTGCTTGAATGCTTAGCG,Distal Intergenic,4,22482780,22488366,5587,2,Pou3f2-201,9344,Pou3f2-201,Pou3f2,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,18,18992,ENSMUSG00000095139,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
4002,cg16485615,0.000013,0.00000332,3.9171525,0.000110259,gain,ns,-0.00000236,0.00000564,-0.418765117,0.675677788,neg,ns,0.001732171,0.001650865,1.049250663,0.294880072,pos,ns,0.530354576,-0.0000618,0.0000568,-1.089173319,0.276923433,neg,ns,0.038312975,L3mbtl3,L3mbtl3_Exon,10,26375933,26375982,26375981,26375982,50,+,TTTTCTCCGTCTCACGAGTAGTCCTGACAAATGGTCCAGGGCTGCGGGCG,Promoter (<=1kb),10,26333858,26375971,42114,2,L3mbtl3-204,0,L3mbtl3-202;L3mbtl3-201;L3mbtl3-203;L3mbtl3-204,L3mbtl3;L3mbtl3;L3mbtl3;L3mbtl3,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,6,237339,ENSMUSG00000039089,conserved gene but different region,10,26375901,26376243,343,*,343,34,0.629737609,1.005344828,0.099125364,5.12E-26,CpGisland,TRUE,NA,NRS
1431,cg17973116,-0.0000145,0.00000708,-2.053652684,0.040847883,loss,ns,0.00000503,0.000012,0.418756164,0.675684324,pos,ns,0.001073096,0.003522329,0.304655266,0.760833147,pos,ns,0.118710575,-0.000255649,0.000121133,-2.110489143,0.03561698,neg,ns,0.895342682,Triqk,Triqk_Intergenic_upstream,4,12864766,12864815,12864814,12864815,50,-,GAAGATTGTATTGACACATCTTCATCTGCATGTCTCATCAGAGGTGTCCG,Distal Intergenic,4,12906838,12980873,74036,1,Triqk-201,-42072,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,11,208820,ENSMUSG00000055963,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21938,cg25807518,-0.00000671,0.00000176,-3.802043837,0.000172797,loss,ns,0.00000126,0.000003,0.418751655,0.675687616,pos,ns,-0.000546944,0.000878187,-0.622810505,0.533866938,neg,ns,0.272566974,0.0000318,0.0000302,1.053671884,0.292853722,pos,ns,0.96019884,Faf1,Faf1_Intron,4,109763305,109763354,109763305,109763306,50,+,CGCAAGAGCAACAGTTGACTGAGTTTACTGTGGTGAAGCTTTGTGTCCGA,"Intron (Faf1-201/Faf1, intron 7 of 18)",4,109676588,109963960,287373,1,Faf1-201,86717,Faf1-201,Faf1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,24,14084,ENSMUSG00000010517,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24011,cg19307135,-0.000000925,0.00000145,-0.635759331,0.525402349,loss,ns,-0.00000103,0.00000247,-0.41871652,0.67571327,neg,ns,-0.000846566,0.000723943,-1.169382342,0.243147962,neg,ns,0.614129367,-0.0000048,0.0000249,-0.192908162,0.847157214,neg,ns,0.972646368,Cux2,Cux2_Intron,5,121889644,121889693,121889644,121889645,50,+,CGCATTAGGCAGGCCAGCTAAAAATTCATCTATAATTATTTGTTGTGTGC,"Intron (Cux2-202/Cux2, intron 5 of 22)",5,121856366,122049851,193486,2,Cux2-202,160158,Cux2-202;Cux2-201;Cux2-210;Cux2-204;Cux2-206;Cux2-207;Cux2-205,Cux2;Cux2;Cux2;Cux2;Cux2;Cux2;Cux2,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,21,13048,ENSMUSG00000042589,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21735,cg04257237,-0.00000155,0.00000101,-1.528856532,0.127319724,loss,ns,-0.000000722,0.00000172,-0.41869134,0.675731655,neg,ns,-0.000314872,0.000504902,-0.623629189,0.533329725,neg,ns,0.27300421,0.000016,0.0000174,0.92264803,0.356908191,pos,ns,0.977286597,Zfhx3,Zfhx3_Intron,8,108942651,108942700,108942699,108942700,50,-,CGCTGCTTACTGCCTTCTTGAATCCCAATCAGGAATTATGATTAAAGTCG,"Intron (Zfhx3-204/Zfhx3, intron 13 of 15)",8,107942644,108961630,1018987,1,Zfhx3-204,1000007,Zfhx3-204;Zfhx3-201,Zfhx3;Zfhx3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,114,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7495,cg20888163,0.00000427,0.00000224,1.905020198,0.057702652,gain,ns,-0.00000159,0.00000381,-0.418631541,0.675775318,neg,ns,-0.0000398,0.001116025,-0.035623409,0.971605569,neg,ns,0.012510004,0.0000568,0.0000384,1.481180097,0.139574266,pos,ns,0.947603983,Mrps9,Mrps9_Intron,1,42888840,42888889,42888888,42888889,50,+,TGGAGCTGACGCGCTAGGCCTGTCAACTTGTTACACGGATGGGTTGCACG,"Intron (Mrps9-201/Mrps9, intron 5 of 10)",1,42851233,42905682,54450,1,Mrps9-201,37607,Mrps9-201;Mrps9-202;Mrps9-203;Mrps9-204;Mrps9-206,Mrps9;Mrps9;Mrps9;Mrps9;Mrps9,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,12,69527,ENSMUSG00000060679,conserved gene and region,1,42888767,42888894,128,*,128,10,0.5703125,0.992248062,0.078125,0.000000662,CpGisland,TRUE,U10,Tr-S
14608,cg19657406,0.000024,0.00000877,2.73311815,0.006634001,gain,ns,0.00000623,0.0000149,0.418432274,0.675920822,pos,ns,0.006588332,0.004363482,1.509879485,0.132092744,pos,ns,0.879121038,-0.000362376,0.00015006,-2.414879012,0.016319012,neg,ns,0.730635944,Mctp1,Mctp1_Exon,13,76825201,76825250,76825201,76825202,50,-,CGCAGATTCAAAATGGTGAACAGAAAGCCTACGTCTTGAAAAACAAGCAG,Promoter (<=1kb),13,76825207,76828076,2870,1,Mctp1-208,0,Mctp1-204;Mctp1-201;Mctp1-206;Mctp1-208;Mctp1-203;Mctp1-207,Mctp1;Mctp1;Mctp1;Mctp1;Mctp1;Mctp1,0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,20,78771,ENSMUSG00000021596,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9181,cg23001868,-0.000000166,0.00000163,-0.101840563,0.918949068,loss,ns,-0.00000116,0.00000276,-0.418335035,0.67599183,neg,ns,-0.000503214,0.000809425,-0.621693641,0.534600256,neg,ns,0.271970837,0.0000173,0.0000278,0.622655399,0.533968748,pos,ns,0.95575498,Cadm1,Cadm1_Intergenic_upstream,9,47410674,47410723,47410674,47410675,50,+,CGGCAGTGTATGGAGTTATGCAAAGCCAAAGTGGGATTACTTAAAAGTGT,Distal Intergenic,9,47530173,47853385,323213,1,Cadm1-204,-119450,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,18,77,54725,ENSMUSG00000032076,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4924,cg01685160,-0.000000503,0.000000624,-0.806630619,0.42049772,loss,ns,0.000000443,0.00000106,0.418075836,0.676181123,pos,ns,-0.000307273,0.000310509,-0.989578505,0.323151936,neg,ns,0.490593238,0.0000073,0.0000107,0.683412409,0.494856747,pos,ns,0.021138318,Stc2,Stc2_Promoter,11,31370093,31370142,31370141,31370142,50,-,GTGCCTCAAATATCCCTGGAAGCTCTGGTGTCACTTGAATGAAGGAGTCG,Promoter (<=1kb),11,31357307,31370074,12768,2,Stc2-201,-68,Stc2-201;Stc2-203;Stc2-204;Stc2-205;Stc2-202,Stc2;Stc2;Stc2;Stc2;Stc2,-19;-990;-1927;-46;-1037,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,2,20856,ENSMUSG00000020303,conserved gene but different region,11,31370141,31370299,159,*,159,19,0.685534591,1.019230769,0.119496855,2.29E-16,CpGisland,TRUE,U3,Pr-B
8524,cg07873121,0.00000108,0.00000105,1.02882915,0.304362023,gain,ns,0.000000748,0.00000179,0.418011077,0.676228419,pos,ns,0.000252719,0.000524195,0.482109176,0.630068596,pos,ns,0.200612166,-0.00000367,0.000018,-0.203856521,0.838599381,neg,ns,0.029279189,Btrc,Btrc_Intron,19,45301983,45302032,45302031,45302032,50,+,AAATCCACATATAATTCTCCTCTTTCCTGTTCAGCTAAGGAAAATAAACG,"Intron (Gm28578-211/Gm28578-211, intron 1 of 1)",19,45363734,45507736,144003,1,Btrc-204,-61702,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,63,98,12234,ENSMUSG00000025217,mapped to different genes,19,45301752,45302408,657,*,657,54,0.611872146,0.882427559,0.082191781,2.09E-36,CpGisland,TRUE,U3,Pr-B
25717,cg12548162,-0.00000823,0.00000425,-1.936571428,0.053706338,loss,ns,0.00000302,0.00000722,0.417943817,0.676277544,pos,ns,-0.001728702,0.00211536,-0.817214169,0.414433655,neg,ns,0.382544984,-0.0000148,0.0000727,-0.203458736,0.838909982,neg,ns,0.921840458,Igbp1b,Igbp1b_Intergenic_upstream,6,138707423,138707472,138707423,138707424,50,+,CGGAGTTATTTTGGAGCTTCATAATTCATTTAAAGAGATTTTTGACATTT,Distal Intergenic,6,138657089,138658544,1456,2,Igbp1b-201,-48879,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,5,50540,ENSMUSG00000046717,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19576,cg16006022,0.0000654,0.00000676,9.665517912,1.73E-19,gain,yes,-0.0000048,0.0000115,-0.41771273,0.676446332,neg,ns,0.006817226,0.003365111,2.025854811,0.043635912,pos,ns,1.360155946,-0.000199711,0.000115726,-1.725722717,0.085393777,neg,ns,0.045337755,Sox14,Sox14_Exon,9,99875373,99875422,99875373,99875374,50,-,CGGGTCCGTGTCGCCCAGGTAGGGCAAGGGGAAGACATACCTGTCCTTCT,Promoter (<=1kb),9,99874106,99876170,2065,2,Sox14-201,748,Sox14-201;Sox14-202,Sox14;Sox14,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,18,20669,ENSMUSG00000053747,conserved gene and region,9,99875259,99875385,127,*,127,15,0.74015748,0.881944444,0.118110236,6.82E-13,CpGisland,TRUE,U13,Hc-P
9370,cg10432728,-0.0000224,0.00000435,-5.155165986,0.000000452,loss,yes,0.00000309,0.0000074,0.417710685,0.676447826,pos,ns,0.000427623,0.002166543,0.197375573,0.843662994,pos,ns,0.073831,-0.000152939,0.0000745,-2.052666944,0.040944091,neg,ns,0.931389636,Tenm3,Tenm3_Intron,8,48434360,48434409,48434408,48434409,50,-,AATGTCATGTTGTCATAGTTCCCATCAGCAAGATGTTTTAAAGGCTTTCG,"Intron (Tenm3-201/Tenm3, intron 2 of 28)",8,48227682,48674690,447009,2,Tenm3-201,240281,Tenm3-201;Tenm3-206;Tenm3-204;Tenm3-208;Tenm3-203;Tenm3-202,Tenm3;Tenm3;Tenm3;Tenm3;Tenm3;Tenm3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,39,23965,ENSMUSG00000031561,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16634,cg03557129,0.0000724,0.00000752,9.626549225,2.31E-19,gain,yes,-0.00000534,0.0000128,-0.417667008,0.676479731,neg,ns,0.010691404,0.003743272,2.856165272,0.004577467,pos,ns,2.339374807,-0.0000982,0.000128731,-0.762641049,0.446257405,neg,ns,0.108141247,Six2,Six2_Exon,17,85687774,85687823,85687774,85687775,50,+,CGGTGGAAGGCCACCACGGCCTTGGCCTTGAGCACGCTTTCATTCTTGTG,Promoter (<=1kb),17,85684277,85688274,3998,2,Six2-202,451,Six2-202;Six2-201,Six2;Six2,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,4,20472,ENSMUSG00000024134,conserved gene and region,17,85687133,85688729,1597,*,1597,179,0.686912962,0.951379829,0.11208516,7.54E-145,CpGisland,TRUE,U3,Pr-B
868,cg27397943,-0.0000268,0.00000739,-3.620631709,0.000343161,loss,ns,-0.00000525,0.0000126,-0.417627329,0.676508715,neg,ns,-0.00747995,0.003680405,-2.032371362,0.042968229,neg,ns,1.366852542,0.0000341,0.000126569,0.269404438,0.7877977,pos,ns,0.07618146,Zbtb10,Zbtb10_Promoter,3,9249856,9249905,9249856,9249857,50,+,CGTTATGACATACTGTAATACTCACAAGGTGGTTGTAGAAGTATAAACAC,Promoter (<=1kb),3,9250602,9285333,34732,1,Zbtb10-201,-697,Zbtb10-201,Zbtb10,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,4,9,229055,ENSMUSG00000069114,conserved gene but different region,3,9249766,9249857,92,*,92,10,0.630434783,1.142857143,0.108695652,2.73E-08,CpGisland,TRUE,NA,NRS
16750,cg01954200,0.0000703,0.0000113,6.195255907,1.85E-09,gain,yes,0.00000805,0.0000193,0.417583653,0.676540619,pos,ns,0.018156318,0.005646293,3.215617317,0.001438997,pos,ns,2.841940236,-0.000392625,0.000194176,-2.022012045,0.044033751,neg,ns,0.378297039,Esrrb,Esrrb_Intron,12,86389040,86389089,86389088,86389089,50,+,TATCAATCAGGACTTTAATTAGACACGTCCGAGAGGGCAGTTCCATCTCG,"Intron (Esrrb-204/Esrrb, intron 1 of 6)",12,86361117,86521628,160512,1,Esrrb-204,27923,Esrrb-204,Esrrb,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,19,26380,ENSMUSG00000021255,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21402,cg04995330,0.00000124,0.00000505,0.24458229,0.806941687,gain,ns,0.00000358,0.00000858,0.417507846,0.676595997,pos,ns,0.003799438,0.00251317,1.511810992,0.131600662,pos,ns,0.880741925,-0.000129747,0.0000864,-1.501223672,0.134315561,neg,ns,0.919980665,Helz,Helz_Exon,11,107663602,107663651,107663650,107663651,50,+,ACCTAGGTACCATGGACAGGATACCAGGGTAGGTTTGCAGTTGATCCTCG,"Exon (Helz-202/Helz, exon 27 of 30)",11,107547956,107672287,124332,1,Helz-202,115646,Helz-202;Helz-201;Helz-203;Helz-204,Helz;Helz;Helz;Helz,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,8,78455,ENSMUSG00000020721,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22650,cg01530159,-0.0000335,0.00000739,-4.52627592,0.00000857,loss,ns,-0.00000524,0.0000126,-0.417499464,0.67660212,neg,ns,-0.009641754,0.003679239,-2.620583854,0.009210383,neg,ns,2.035722321,-0.0000328,0.000126529,-0.258845675,0.795926102,neg,ns,0.902817694,Sox6,Sox6_Exon,7,115597564,115597613,115597564,115597565,50,+,CGCTGGTCATGTGGAAAAATTGGGATCATGAGCGGAGGCATGTGACCCTG,"Exon (Sox6-210/Sox6, exon 8 of 16)",7,115470872,116031047,560176,2,Sox6-210,433434,Sox6-210;Sox6-201;Sox6-202;Sox6-204;Sox6-205;Sox6-203;Sox6-212;Sox6-206;Sox6-209;Sox6-215;Sox6-214;Sox6-207;Sox6-213,Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,57,20679,ENSMUSG00000051910,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5702,cg21417562,0.0000163,0.00000753,2.159214078,0.031600385,gain,ns,0.00000534,0.0000128,0.417458735,0.676631873,pos,ns,0.006480333,0.003747033,1.729456999,0.084722771,pos,ns,1.071999847,-0.000285852,0.00012886,-2.218308607,0.027258123,neg,ns,0.823463369,Mapkap1,Mapkap1_Exon,2,34597463,34597512,34597511,34597512,50,+,TCAGAAAGCCAGCACTAAGTTTTGGATTAAGCAGAAACCCATCTCAATCG,"Exon (Mapkap1-204/Mapkap1, exon 9 of 11)",2,34406862,34623475,216614,1,Mapkap1-204,190601,Mapkap1-204;Mapkap1-202;Mapkap1-201;Mapkap1-209;Mapkap1-203,Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,59,227743,ENSMUSG00000038696,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12479,cg06691214,-0.00000502,0.00000173,-2.896950322,0.00403629,loss,ns,-0.00000123,0.00000294,-0.417451434,0.676637206,neg,ns,0.000428094,0.000861839,0.496722182,0.619737033,pos,ns,0.207792551,-0.0000572,0.0000296,-1.930315413,0.054479733,neg,ns,0.026012702,Creb1,Creb1_fiveUTR,1,64532953,64533002,64533001,64533002,50,+,GAGAGAATAAAACTCCAGCGAGATCCGGGCCGTGAACGAAAGCAGTGACG,Promoter (<=1kb),1,64532645,64597695,65051,1,Creb1-204,308,Creb1-204;Creb1-203;Creb1-208;Creb1-207;Creb1-201;Creb1-202;Creb1-205;Creb1-210;Creb1-209,Creb1;Creb1;Creb1;Creb1;Creb1;Creb1;Creb1;Creb1;Creb1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,4,12912,ENSMUSG00000025958,conserved gene and region,1,64532568,64533528,961,*,961,130,0.751300728,0.963631455,0.135275754,1.20E-117,CpGisland,TRUE,U1,Pr-A
25437,cg19874047,-0.00000143,0.00000109,-1.31120535,0.190758774,loss,ns,0.000000775,0.00000186,0.417399721,0.676674984,pos,ns,-0.000112864,0.000543724,-0.207575466,0.835696756,neg,ns,0.077951284,0.0000171,0.0000187,0.916158977,0.360295653,pos,ns,0.034640005,Cux1,Cux1_fiveUTR,5,136567210,136567259,136567258,136567259,50,-,ATTGAAACATCGATCCCACATTGGCCGCCATCTTGAGACATATTGAGACG,Promoter (<=1kb),5,136248135,136567248,319114,2,Cux1-207,0,Cux1-207;Cux1-211;Cux1-203;Cux1-213;Cux1-201;Cux1-204;Cux1-212;Cux1-206;Cux1-210;Cux1-214,Cux1;Cux1;Cux1;Cux1;Cux1;Cux1;Cux1;Cux1;Cux1;Cux1,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,21,13047,ENSMUSG00000029705,conserved gene and region,5,136566666,136567259,594,*,594,56,0.668350168,0.844478294,0.094276094,3.36E-41,CpGisland,TRUE,U1,Pr-A
5253,cg04759478,0.0000121,0.00000811,1.49676342,0.135472246,gain,ns,-0.00000575,0.0000138,-0.417389172,0.676682691,neg,ns,-0.006107226,0.004036193,-1.513115436,0.131269143,neg,ns,0.881837349,0.000238508,0.000138804,1.718302272,0.086739954,pos,ns,0.860034171,Tlx3,Tlx3_Intergenic_downstream,11,33192777,33192826,33192777,33192778,50,+,CGTGCTAATATGCAAAATGCATTTAAGTTTTTTGAAATAGAGAATAATAA,Distal Intergenic,11,33200752,33203589,2838,2,Tlx3-201,10763,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,20,27140,ENSMUSG00000040610,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
6750,cg16043070,0.0000588,0.00000576,10.19469527,3.08E-21,gain,yes,-0.00000409,0.00000979,-0.417362054,0.676702502,neg,ns,-0.001201735,0.002868738,-0.418907101,0.675574125,neg,ns,0.170326993,0.000338174,0.0000987,3.42782111,0.000690658,pos,ns,0.134635392,Lhx2,Lhx2_Intron,2,38347848,38347897,38347848,38347849,50,-,CGTCACAGCAAACACACACTTCTGAACGTCTTCATTTTGATTTAATGGTA,"Intron (Lhx2-203/Lhx2, intron 1 of 4)",2,38339281,38369199,29919,1,Lhx2-203,8567,Lhx2-203;Lhx2-204;Lhx2-202;Lhx2-201;Lhx2-207;Lhx2-205,Lhx2;Lhx2;Lhx2;Lhx2;Lhx2;Lhx2,0;0;0;0;-3871;-4635,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,33,16870,ENSMUSG00000000247,mapped to different genes,2,38347822,38348178,357,*,357,27,0.518207283,1.126841244,0.075630252,1.55E-17,CpGisland,TRUE,U3,Pr-B
2872,cg22732253,0.00000349,0.00000894,0.390777997,0.696229756,gain,ns,0.00000633,0.0000152,0.41732869,0.676726877,pos,ns,0.005368295,0.00444705,1.207158664,0.228291322,pos,ns,0.641510598,0.0000497,0.000152934,0.324699936,0.745627185,pos,ns,0.395575981,Otx1,Otx1_fiveUTR,11,21999437,21999486,21999437,21999438,50,+,CGTTCATGCCGTATGGGGGTTGTTTGAGGTAAGACATCATGCTAACAGCT,5' UTR,11,21994764,22001615,6852,2,Otx1-201,2129,Otx1-201;Otx1-203;Otx1-202,Otx1;Otx1;Otx1,0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,13,18423,ENSMUSG00000005917,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
4370,cg13566716,0.0000114,0.00000389,2.921100579,0.003744023,gain,ns,-0.00000275,0.0000066,-0.41700479,0.676963523,neg,ns,0.0000215,0.001934989,0.011092957,0.991156418,pos,ns,0.003857803,-0.0000674,0.0000665,-1.012885879,0.311904574,neg,ns,0.936856136,Tnik,Tnik_threeUTR,3,28596081,28596130,28596081,28596082,50,-,CGCAAACAATTGGAAGAACAGAGACAAGCAGAAAGACTGCAGAGGCAGCT,3' UTR,3,28263214,28670585,407372,1,Tnik-207,332867,Tnik-207;Tnik-201;Tnik-212;Tnik-203;Tnik-205;Tnik-202;Tnik-206;Tnik-211;Tnik-214;Tnik-215;Tnik-210,Tnik;Tnik;Tnik;Tnik;Tnik;Tnik;Tnik;Tnik;Tnik;Tnik;Tnik,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,8,15,665113,ENSMUSG00000027692,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22176,cg03699276,0.00000425,0.00000644,0.660484076,0.509433717,gain,ns,0.00000456,0.0000109,0.416971768,0.676987651,pos,ns,0.004860897,0.003204903,1.516706398,0.130359876,pos,ns,0.884856063,-0.000402047,0.000110216,-3.647795205,0.000310192,neg,ns,0.878738106,Gm26897,Gm26897_Intergenic_upstream,5,111660594,111660643,111660594,111660595,50,-,CGATCTGTTCCAGCATTTGACTTTCAACCATGACAAAACTGTGGGCAAAT,Distal Intergenic,5,111733924,111734574,651,1,Gm26897-201,-73330,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,23,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17704,cg03425126,0.0000403,0.00000582,6.925365503,2.51E-11,gain,yes,-0.00000412,0.00000988,-0.416943935,0.677007988,neg,ns,0.005354221,0.002895028,1.849453878,0.06534404,pos,ns,1.18479402,-0.000247811,0.0000996,-2.489065537,0.013332241,neg,ns,0.11004262,Zic4,Zic4_Intergenic_downstream,9,91394549,91394598,91394549,91394550,50,-,CGCACCTGCAGTCTGAATAGGGCTCCTTGTCAATGGGGGACACGCTTGTT,Distal Intergenic,9,91382410,91388044,5635,1,Zic4-202,12188,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,55,22774,ENSMUSG00000036972,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
8180,cg02681616,-0.00000379,0.00000981,-0.386064162,0.699713972,loss,ns,0.00000695,0.0000167,0.416883193,0.677052372,pos,ns,0.005164563,0.004883122,1.057635311,0.291045193,pos,ns,0.53603957,0.0000269,0.00016793,0.159980272,0.873000804,pos,ns,0.250246273,Pax2,Pax2_Intron,19,44834483,44834532,44834483,44834484,50,-,CGATGGGGAAGGAGATAGCTCAGTTCCTCTTGGTCACAGTTGAGCTCAGA,"Intron (Pax2-203/Pax2, intron 8 of 9)",19,44756045,44837851,81807,1,Pax2-203,78438,Pax2-203;Pax2-201,Pax2;Pax2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,35,166,18504,ENSMUSG00000004231,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
20185,cg09683752,-0.000014,0.0000168,-0.831748502,0.406191142,loss,ns,0.0000119,0.0000286,0.416835366,0.677087319,pos,ns,-0.031714971,0.008384355,-3.782636921,0.000186196,neg,ns,3.73002884,0.001012166,0.000288337,3.510354011,0.000513893,pos,ns,0.907138979,Mapk10,Mapk10_threeUTR,5,102913178,102913227,102913178,102913179,50,+,CGGCTAGTCACCTGCAACAACCCAGGGGTCCTGCCGAGGCTTCCAGGCTG,3' UTR,5,102907948,103211334,303387,2,Mapk10-212,298107,Mapk10-212;Mapk10-201;Mapk10-204;Mapk10-203;Mapk10-213;Mapk10-209,Mapk10;Mapk10;Mapk10;Mapk10;Mapk10;Mapk10,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,3,26414,ENSMUSG00000046709,conserved gene and region,5,102913139,102913288,150,*,150,12,0.62,0.840336135,0.08,2.48E-08,CpGisland,TRUE,U15,NS
3137,cg20998752,-0.0000237,0.00000588,-4.022206092,0.0000725,loss,ns,-0.00000416,0.00000999,-0.416773211,0.677132738,neg,ns,-0.007360564,0.00292702,-2.514695783,0.012419411,neg,ns,1.905898995,0.000100887,0.00010066,1.002251775,0.317003682,pos,ns,0.876226104,Gm11879,Gm11879_Intergenic_downstream,4,22947057,22947106,22947057,22947058,50,+,CGAACCAGACTGCCTTCACAGAGCTGTCCAAAAAGAGGGAGCAAATTAAA,Distal Intergenic,4,22704057,22704758,702,1,Gm11879-201,243000,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,19,19,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1822,cg10751720,-0.00001,0.00000205,-4.892894413,0.0000016,loss,yes,0.00000145,0.00000348,0.416712132,0.677177371,pos,ns,0.000199337,0.001018607,0.195695382,0.84497681,pos,ns,0.07315521,-0.0000347,0.000035,-0.990545984,0.322679842,neg,ns,0.944047757,Foxp2,Foxp2_Exon,6,15409852,15409901,15409900,15409901,50,-,GGACCCTCAGTAATCACCCCAGCCAGTGTGCCCAATGTGGGAGCCATACG,"Exon (Foxp2-207/Foxp2, exon 13 of 19)",6,14901349,15441977,540629,1,Foxp2-207,508503,Foxp2-207;Foxp2-213;Foxp2-205;Foxp2-204;Foxp2-201;Foxp2-209;Foxp2-202;Foxp2-206,Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,65,114142,ENSMUSG00000029563,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6473,cg10932466,-0.0000333,0.00000738,-4.511933091,0.00000913,loss,ns,-0.00000523,0.0000125,-0.416707493,0.677180761,neg,ns,-0.002625695,0.00367534,-0.714408925,0.475511948,neg,ns,0.322838566,-0.000137365,0.000126395,-1.086797201,0.277970754,neg,ns,0.9131119,Rc3h2,Rc3h2_Exon,2,37389796,37389845,37389796,37389797,50,+,CGGCTGTGGTTGTGACAGTGTTGTTTACACCAACTTTATTTAGAAGAGGA,"Exon (Rc3h2-202/Rc3h2, exon 11 of 22)",2,37370069,37422903,52835,2,Rc3h2-202,33058,Rc3h2-202;Rc3h2-201;Rc3h2-203;Rc3h2-205;Rc3h2-210,Rc3h2;Rc3h2;Rc3h2;Rc3h2;Rc3h2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,10,319817,ENSMUSG00000075376,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11479,cg05418260,-0.000054,0.00000962,-5.610981512,4.46E-08,loss,yes,0.00000681,0.0000163,0.416684018,0.677197915,pos,ns,-0.01722631,0.00478901,-3.597050494,0.000374426,neg,ns,3.426633531,0.000371333,0.000164694,2.254692172,0.024850288,pos,ns,0.654392387,Insyn1,Insyn1_Intron,9,58467482,58467531,58467482,58467483,50,+,CGGACCTGCAAGAAAAATAGCAACAGATTTGCTGAGTCATTGGCCCCACA,"Intron (4930461G14Rik-201/4930461G14Rik-201, intron 2 of 2)",9,58488603,58499742,11140,1,Insyn1-201,-21072,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,4,319477,ENSMUSG00000066607,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3423,cg20348846,-0.00000446,0.0000012,-3.715806248,0.000240238,loss,ns,0.000000849,0.00000204,0.41666181,0.677214145,pos,ns,0.00000438,0.000597109,0.007331935,0.994154731,pos,ns,0.002546016,-0.0000101,0.0000205,-0.493571703,0.621958182,neg,ns,0.049228952,A830031A19Rik,A830031A19Rik_Promoter,11,24076463,24076512,24076463,24076464,50,+,CGTTTCTGAATAAACTTTCCAATCGCAGGGGGTGCTGTTGCTGTACATTT,Promoter (1-2kb),11,24048955,24075054,26100,2,A830031A19Rik-201,-1409,A830031A19Rik-201;Bcl11a-201;Bcl11a-203;Bcl11a-205;Bcl11a-202;Bcl11a-204,A830031A19Rik;Bcl11a;Bcl11a;Bcl11a;Bcl11a;Bcl11a,0;0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,9,23,268391,NA,mapped to different genes,11,24076381,24076583,203,*,203,22,0.630541872,1.145128205,0.108374384,6.83E-18,CpGisland,TRUE,NA,NRS
24593,cg02614847,0.0000106,0.00000797,1.323687972,0.186581995,gain,ns,0.00000564,0.0000135,0.416645757,0.677225875,pos,ns,0.005345405,0.003967787,1.347200548,0.178899556,pos,ns,0.747390737,-0.000433357,0.000136452,-3.175899664,0.001644035,neg,ns,0.218624413,Tspan31,Tspan31_Exon,10,127068517,127068566,127068565,127068566,50,-,GTGAGGTTGAATAAGCCACAACAATCAAAACTTCTTTCCAGTTCATCCCG,"Exon (Tspan31-201/Tspan31, exon 4 of 6)",10,127067280,127070264,2985,2,Tspan31-201,1698,Cdk4-201;Cdk4-202;Cdk4-205;Cdk4-208;Cdk4-207;Cdk4-206;Cdk4-204;Cdk4-203;Cdk4-209;Tspan31-201;Tspan31-203;Tspan31-204;Tspan31-205;Tspan31-202,Cdk4;Cdk4;Cdk4;Cdk4;Cdk4;Cdk4;Cdk4;Cdk4;Cdk4;Tspan31;Tspan31;Tspan31;Tspan31;Tspan31,4983;4914;4913;4908;4903;4901;4649;4219;2441;0;0;1415;1695;1690,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,67125,ENSMUSG00000006736,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10829,cg27277985,0.00000256,0.00000241,1.063536083,0.288366653,gain,ns,-0.00000171,0.00000409,-0.416579407,0.677274363,neg,ns,0.002017715,0.001199381,1.682297146,0.093518163,pos,ns,1.029104034,-0.0000671,0.0000412,-1.626543701,0.104850077,neg,ns,0.940323885,Fam193b,Fam193b_Exon,13,55556035,55556084,55556035,55556036,50,-,CGGCAACTCTGGCAGACCCACAGAGGCATCTCGCCTAGGAGATTCTTGAC,"Exon (Fam193b-206/Fam193b, exon 2 of 9)",13,55539316,55571100,31785,2,Fam193b-206,15016,Fam193b-206;Fam193b-201;Fam193b-204;Fam193b-203;Fam193b-207,Fam193b;Fam193b;Fam193b;Fam193b;Fam193b,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,11,212483,ENSMUSG00000021495,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
985,cg10566829,0.000102569,0.00000604,16.97840638,3.59E-46,gain,yes,-0.00000427,0.0000103,-0.416465408,0.677357675,neg,ns,0.006581349,0.003006736,2.188867892,0.029352098,pos,ns,1.532360852,0.000109605,0.000103401,1.059991562,0.289973609,pos,ns,0.122108638,Sfmbt2,Sfmbt2_Exon,2,10373709,10373758,10373709,10373710,50,+,CGTGCCAGTTTCAATATGGCGGGCTAAGGTGGCTTTTAAAAACTGAAAAT,"Exon (Gm13261-201/Gm13261-201, exon 1 of 4)",2,10370510,10439137,68628,1,Sfmbt2-203,3199,Sfmbt2-203;Sfmbt2-202;Sfmbt2-206;Sfmbt2-204;Sfmbt2-205;Sfmbt2-207;Sfmbt2-201,Sfmbt2;Sfmbt2;Sfmbt2;Sfmbt2;Sfmbt2;Sfmbt2;Sfmbt2,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,353282,ENSMUSG00000061186,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
6854,cg17619764,-0.0000103,0.00000285,-3.617986614,0.000346542,loss,ns,0.00000202,0.00000484,0.416451641,0.677367736,pos,ns,0.000264202,0.00141919,0.186164248,0.85243772,pos,ns,0.069337341,-0.000138464,0.0000488,-2.83704149,0.004853291,neg,ns,0.941453898,Slc35b3,Slc35b3_Intron,13,38814638,38814687,38814686,38814687,50,+,ATTTCACAGCTGAGCTGTGTATTGCCAGATAAATCAAATCAGGGTAAACG,"Intron (Gm46392-201/Gm46392-201, intron 3 of 3)",13,38932719,38943152,10434,2,Slc35b3-208,128465,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,11,108652,ENSMUSG00000021432,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2441,cg13856487,0.0000138,0.0000201,0.682867091,0.49520082,gain,ns,0.0000143,0.0000342,0.416412555,0.677396302,pos,ns,-0.009313289,0.010027944,-0.928733682,0.353749699,neg,ns,0.451303921,0.00023941,0.00034486,0.694224776,0.488061174,pos,ns,0.403451971,Ptf1a,Ptf1a_Intergenic_downstream,2,19451631,19451680,19451679,19451680,50,+,TATGTTTTGTGTCTCCATATTTTGATCCGTACGATTAAGCAGATGTTACG,Distal Intergenic,2,19445663,19447501,1839,1,Ptf1a-201,5968,Ptf1a-201,Ptf1a,5968,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,14,21,19213,ENSMUSG00000026735,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
16697,cg25118671,0.0000174,0.00000715,2.427178447,0.015786265,gain,ns,0.00000506,0.0000121,0.416382558,0.677418225,pos,ns,0.008098459,0.003558595,2.275746056,0.023543272,pos,ns,1.628133175,-0.0000492,0.00012238,-0.401733681,0.688156849,neg,ns,0.055859689,Prkce,Prkce_fiveUTR,17,86168588,86168637,86168588,86168589,50,+,CGACCATGGTAGTGTTCAATGGCCTTCTTAAGATCAAAATCTGCGAGGCC,Promoter (<=1kb),17,86167785,86657919,490135,1,Prkce-202,803,Prkce-202;Prkce-204;Prkce-201,Prkce;Prkce;Prkce,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,7,18754,ENSMUSG00000045038,conserved gene and region,17,86168528,86168589,62,*,62,8,0.758064516,0.932330827,0.129032258,0.00000029,CpGisland,TRUE,U3,Pr-B
5757,cg14919591,-0.00000024,0.00000117,-0.204909794,0.837777079,loss,ns,-0.00000083,0.00000199,-0.416377723,0.677421759,neg,ns,0.000114395,0.000583985,0.19588743,0.844826617,pos,ns,0.073232412,-0.0000285,0.0000201,-1.41674407,0.15756189,neg,ns,0.02626428,Kctd15,Kctd15_Promoter,7,34655105,34655154,34655153,34655154,50,-,TTTCAGCTGGGCATAAATTTTCGGCTCCCAAATAAGTAACACAGGGCACG,Promoter (<=1kb),7,34639019,34655509,16491,2,Kctd15-201,355,Kctd15-202;Kctd15-203;Kctd15-201;Kctd15-208;Kctd15-204;Kctd15-205;Kctd15-207,Kctd15;Kctd15;Kctd15;Kctd15;Kctd15;Kctd15;Kctd15,0;0;0;0;0;0;1578,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,7,25,233107,ENSMUSG00000030499,conserved gene and region,7,34655098,34655231,134,*,134,13,0.589552239,1.116666667,0.097014925,4.65E-10,CpGisland,TRUE,NA,NRS
22516,cg20588435,0.000176313,0.00000934,18.88317898,1.80E-53,gain,yes,-0.0000066,0.0000159,-0.416314614,0.677467883,neg,ns,0.014506814,0.004647153,3.121656443,0.001967844,pos,ns,2.706009302,0.0000833,0.000159815,0.521490869,0.602397222,pos,ns,0.367913776,Foxd2,Foxd2_Intergenic_downstream,4,114903590,114903639,114903590,114903591,50,+,CGCTGGATGAAAAGGAATGAAATTGAACGAAATTGAACGAAATGAAGTGA,Downstream (2-3kb),4,114906282,114908873,2592,2,Foxd2-201,5234,Foxd2-201,Foxd2,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,2,3,17301,ENSMUSG00000055210,conserved gene and region,4,114903546,114903692,147,*,147,11,0.517006803,1.1484375,0.074829932,0.000000227,CpGisland,TRUE,U13,Hc-P
8773,cg20105874,0.0000248,0.00000393,6.326899957,8.74E-10,gain,yes,-0.00000278,0.00000667,-0.41616668,0.677576008,neg,ns,0.006354418,0.001954752,3.250754685,0.001277619,pos,ns,2.893598655,-0.000137521,0.0000672,-2.045719458,0.04162765,neg,ns,0.089572221,Fgf8,Fgf8_Exon,19,45737051,45737100,45737099,45737100,50,+,TAGTTGAGGAACTCGAAGCGCAGGCTCTGCTCGGTGGTGTGGTGGCCCCG,"Exon (Fgf8-201/Fgf8, exon 6 of 6)",19,45736798,45742874,6077,2,Fgf8-201,5774,Fgf8-201;Fgf8-206;Fgf8-202;Fgf8-205;Fgf8-203;Fgf8-204,Fgf8;Fgf8;Fgf8;Fgf8;Fgf8;Fgf8,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,18,14179,ENSMUSG00000025219,conserved gene but different region,19,45736933,45737275,343,*,343,34,0.673469388,0.881481482,0.099125364,5.12E-26,CpGisland,TRUE,U3,Pr-B
17590,cg12780189,0.00000373,0.000021,0.177345106,0.859353141,gain,ns,0.0000149,0.0000357,0.416163431,0.677578383,pos,ns,0.013559782,0.010461126,1.296206675,0.195868436,pos,ns,0.708035545,-0.000670035,0.000359757,-1.862465497,0.06348336,neg,ns,0.825549077,Gm49612,Gm49612_Promoter,16,91140729,91140778,91140777,91140778,50,+,ATAACAAAAACATTACAGCAGGGACAGACGCCACTAATAAGGACCCCTCG,Promoter (5-6kb),16,91135275,91135476,202,2,Gm49612-201,-5253,NA,NA,NA,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,5,5,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
20434,cg26927031,0.0000282,0.00000285,9.867810018,3.75E-20,gain,yes,-0.00000202,0.00000485,-0.415945146,0.677737939,neg,ns,0.00070476,0.001420836,0.496017614,0.620233466,pos,ns,0.207444804,0.0000464,0.0000489,0.950269102,0.34271579,pos,ns,0.07136839,Hoxc4,Hoxc4_threeUTR,15,103035669,103035718,103035669,103035670,50,-,CGCTCGAGGACAGCCTATACCCGGCAGCAAGTCCTGGAATTAGAGAAAGA,3' UTR,15,103018934,103036405,17472,1,Hoxc4-202,16735,Hoxc4-202;Hoxc4-201,Hoxc4;Hoxc4,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,17,91,15423,ENSMUSG00000075394,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
8411,cg12532680,0.0000118,0.0000105,1.121882818,0.262780489,gain,ns,0.00000744,0.0000179,0.415878962,0.677786319,pos,ns,0.01024359,0.005243993,1.953395248,0.051672075,pos,ns,1.286744097,-0.000290288,0.00018034,-1.60966512,0.108488783,neg,ns,0.496340347,Kazald1,Kazald1_Intron,19,45102728,45102777,45102776,45102777,50,+,GAACTGACAGGGTAATTATTAGCTTCTAATTGCAGGGCAAACTCAGGCCG,"Intron (Gm35867-201/Gm35867-201, intron 3 of 4)",19,45076139,45079289,3151,1,Kazald1-201,26589,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,8,107250,ENSMUSG00000025213,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2588,cg06496890,-0.00000165,0.000000547,-3.008154394,0.002843758,loss,ns,0.000000387,0.00000093,0.415835993,0.677817731,pos,ns,0.000171126,0.000272473,0.628048229,0.530434742,pos,ns,0.275368039,-0.0000178,0.00000937,-1.900677425,0.058271686,neg,ns,0.00920727,Eif4g1,Eif4g1_fiveUTR,16,20672792,20672841,20672840,20672841,50,+,ATCTGTGCGGGGAGCCGGAAATGGTTGTGGACTACGTCTGTGCGGCTGCG,Promoter (<=1kb),16,20672820,20678639,5820,1,Eif4g1-225,0,Eif4g1-220;Eif4g1-208;Eif4g1-201;Eif4g1-206;Eif4g1-216;Eif4g1-202;Eif4g1-217;Eif4g1-207;Eif4g1-218;Eif4g1-225;Eif4g1-214;Eif4g1-203;Eif4g1-222;Eif4g1-221;Eif4g1-205;Eif4g1-212;Eif4g1-204;Eif4g1-215;Eif4g1-219,Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,7,10,208643,ENSMUSG00000045983,conserved gene and region,16,20672514,20673561,1048,*,1048,121,0.738549618,0.847148736,0.115458015,6.53E-100,CpGisland,TRUE,U1,Pr-A
7246,cg21599130,-0.00001,0.00000189,-5.319811178,0.000000199,loss,yes,0.00000133,0.0000032,0.415827487,0.677823948,pos,ns,0.002960136,0.000938933,3.152659595,0.001776213,pos,ns,2.750505004,-0.000115102,0.0000323,-3.564648298,0.000421769,neg,ns,0.057405224,Gm8707,Gm8707_Intron,9,41736108,41736157,41736156,41736157,50,-,AAGACCTGGCATTCCAGCTGTCTGCGTCTAATCTCCAGTGTCAGCTCTCG,"Intron (Gm35835-202/Gm35835-202, intron 2 of 4)",9,41654303,41655282,980,1,Gm8707-201,81854,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,12,667566,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
21786,cg14857197,-0.00000961,0.00000481,-1.998991311,0.046482044,loss,ns,-0.0000034,0.00000817,-0.415770901,0.677865315,neg,ns,-0.005241359,0.002392491,-2.190753955,0.029213899,neg,ns,1.534410475,0.0000895,0.0000823,1.088201295,0.277351545,pos,ns,0.891446598,Lmo1,Lmo1_Intron,7,109161665,109161714,109161665,109161666,50,-,CGTTGGTTGAGTCATAAGTTATCAGCACCCAGTGAGGGCCGACAGAATGC,"Intron (Lmo1-201/Lmo1, intron 1 of 3)",7,109138572,109170519,31948,2,Lmo1-201,8805,Lmo1-201;Lmo1-202;Lmo1-203,Lmo1;Lmo1;Lmo1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,66,109594,ENSMUSG00000036111,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
577,cg12210410,0.0000284,0.00000731,3.884395049,0.000125435,gain,ns,-0.00000516,0.0000124,-0.415662515,0.677944552,neg,ns,-0.003817889,0.003638779,-1.049222522,0.294892999,neg,ns,0.530335537,0.0000632,0.000125137,0.504974699,0.613935397,pos,ns,0.890014579,Rbfox1,Rbfox1_Intron,16,6934938,6934987,6934938,6934939,50,-,CGTTTAACATTTTATTAGAGGGAAACAGTTTTTAATCTATTGATGCCCTG,"Intron (Rbfox1-205/Rbfox1, intron 4 of 11)",16,5885355,7353045,1467691,1,Rbfox1-205,1049583,Rbfox1-205;Rbfox1-201;Rbfox1-202,Rbfox1;Rbfox1;Rbfox1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,35,268859,ENSMUSG00000008658,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10978,cg19584114,-0.00000603,0.00000599,-1.00633405,0.315039749,loss,ns,0.00000423,0.0000102,0.415656465,0.677948974,pos,ns,0.001168798,0.00298241,0.391896958,0.695403622,pos,ns,0.157763052,-0.00023111,0.000102565,-2.253301359,0.024938811,neg,ns,0.87835983,Nbea,Nbea_Exon,3,55965996,55966045,55966044,55966045,50,+,AACTCATTTCAAACTGCCACCTCCCATTATGGCTTTGAGTAGTGAAGACG,"Exon (Nbea-202/Nbea, exon 1 of 1)",3,55625195,56183701,558507,2,Nbea-201,217656,Nbea-201;Nbea-202,Nbea;Nbea,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,14,26422,ENSMUSG00000027799,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14662,cg23418225,-0.00000462,0.00000765,-0.604258916,0.546113481,loss,ns,-0.0000054,0.000013,-0.41562828,0.67796958,neg,ns,-0.00183553,0.003808494,-0.481956913,0.630176637,neg,ns,0.200537702,0.0000374,0.000130974,0.28588254,0.775159024,pos,ns,0.800861605,Epha4,Epha4_Intergenic_downstream,1,77141065,77141114,77141065,77141066,50,+,CGTGATGCTGTATTAATTGCCCTGGAGGGTAGCGAGGCCTTTGAACTGTG,Distal Intergenic,1,77373613,77377607,3995,2,Epha4-203,236493,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,9,13838,ENSMUSG00000026235,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23198,cg19945835,-0.0000516,0.00000969,-5.326904334,0.000000192,loss,yes,0.00000684,0.0000165,0.415593433,0.677995056,pos,ns,-0.010280713,0.00482225,-2.131932802,0.033798329,neg,ns,1.471104767,0.000378312,0.000165837,2.281229875,0.02321284,pos,ns,0.592253722,Rnf220,Rnf220_Intron,4,117427804,117427853,117427852,117427853,50,+,GACCTCGTAACTGGGGCCTCTATTATTACAATTAATTTATCACAGAAGCG,"Intron (Rnf220-201/Rnf220, intron 2 of 14)",4,117271463,117497052,225590,2,Rnf220-201,69199,Rnf220-201;Rnf220-207,Rnf220;Rnf220,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21042,cg11209338,0.00000737,0.00000202,3.656280323,0.000300521,gain,ns,-0.00000142,0.00000343,-0.415496208,0.678066138,neg,ns,0.001852736,0.001003422,1.846417288,0.065784719,pos,ns,1.181874973,-0.0000321,0.0000345,-0.930230306,0.352975669,neg,ns,0.076155063,Glyctk,Glyctk_Exon,9,106148694,106148743,106148694,106148695,50,+,CGGGACAGTTCCCACACTGCAGTGCCTCTGGTGAGGAGACAGCGCCACTG,"Exon (D030055H07Rik-201/D030055H07Rik-201, exon 1 of 7)",9,106155548,106157250,1703,2,Glyctk-205,8507,Glyctk-201;Glyctk-202,Glyctk;Glyctk,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,6,235582,ENSMUSG00000020258,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
15022,cg08242249,-0.000013,0.00000829,-1.563693499,0.118909791,loss,ns,0.00000585,0.0000141,0.415475957,0.678080944,pos,ns,-0.003521805,0.004125654,-0.853635464,0.393966121,neg,ns,0.404541123,-0.000235338,0.000141881,-1.658702428,0.098187156,neg,ns,0.807287121,Ntrk3,Ntrk3_Intron,7,78527460,78527509,78527508,78527509,50,-,CACCCTTTACTGAATTATAAAGCACTTATCACTTCTTTAATAACTACCCG,"Intron (Ntrk3-201/Ntrk3, intron 1 of 16)",7,78175959,78578408,402450,2,Ntrk3-201,50899,Ntrk3-201;Ntrk3-206;Ntrk3-205;Ntrk3-202;Ntrk3-204;Ntrk3-213;Ntrk3-210;Ntrk3-214,Ntrk3;Ntrk3;Ntrk3;Ntrk3;Ntrk3;Ntrk3;Ntrk3;Ntrk3,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,15,18213,ENSMUSG00000059146,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25285,cg01343642,0.00000146,0.00000366,0.399592003,0.689732215,gain,ns,-0.00000258,0.00000621,-0.415259434,0.678239258,neg,ns,-0.002449315,0.001820174,-1.345649155,0.179399055,neg,ns,0.746179849,0.0000345,0.0000626,0.550477039,0.582388665,pos,ns,0.796594618,Ppfia4,Ppfia4_Exon,1,134317116,134317165,134317116,134317117,50,-,CGTCCTGGGTGAGGAAGGAGGAGAAGTCTCACATTTTATGGTGGCTTTAT,"Exon (Ppfia4-201/Ppfia4, exon 16 of 29)",1,134296783,134332928,36146,2,Ppfia4-201,15763,Ppfia4-201;Ppfia4-203;Ppfia4-205,Ppfia4;Ppfia4;Ppfia4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,68507,ENSMUSG00000026458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10403,cg22097793,0.0000844,0.0000163,5.182188673,0.000000396,gain,yes,-0.0000115,0.0000277,-0.415189157,0.678290645,neg,ns,0.025226046,0.008105348,3.112271576,0.002029508,pos,ns,2.692609315,-0.000639441,0.000278742,-2.294021412,0.022457759,neg,ns,0.402032781,Snx24,Snx24_Intron,18,53361898,53361947,53361898,53361899,50,-,CGATGAATTGTTTACTTGCATAAAATAACCTTTCAATAAGGGAAGATGCA,"Intron (Snx24-202/Snx24, intron 3 of 6)",18,53245662,53390920,145259,1,Snx24-202,116236,Snx24-202;Snx24-201,Snx24;Snx24,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,7,69226,ENSMUSG00000024535,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16127,cg26385817,0.0000131,0.0000114,1.144284909,0.253388264,gain,ns,0.00000807,0.0000194,0.415174969,0.678301019,pos,ns,0.00862767,0.005695027,1.514947979,0.13080451,pos,ns,0.883377283,-0.0000712,0.000195852,-0.3636773,0.71634689,neg,ns,0.812774524,Pcdh17,Pcdh17_Exon,14,84477566,84477615,84477566,84477567,50,+,CGGGGACAGTGATCAGGCTGACAGTGACCAAGACACTAACAAAGGCTCCT,"Exon (Pcdh17-201/Pcdh17, exon 3 of 4)",14,84443563,84539002,95440,1,Pcdh17-201,34003,Pcdh17-201;Pcdh17-202,Pcdh17;Pcdh17,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,13,219228,ENSMUSG00000035566,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7606,cg09032775,-0.000185702,0.0000463,-4.008145217,0.0000767,loss,ns,-0.0000327,0.0000787,-0.415153858,0.678316457,neg,ns,0.057946292,0.023059496,2.512903671,0.012481381,pos,ns,1.903737373,-0.002239986,0.000793014,-2.824647702,0.005040029,neg,ns,0.734882695,Zbtb20,Zbtb20_Exon,16,43410681,43410730,43410681,43410682,50,-,CGTTTTTAAAAGCCATTTGTAGCACCAGCTGTTGGCATTATTTTATATTT,"Exon (Gm15713-201/Gm15713-201, exon 5 of 5)",16,42875881,43463175,587295,1,Zbtb20-209,534800,Zbtb20-209;Zbtb20-211;Zbtb20-217;Zbtb20-218;Zbtb20-204;Zbtb20-215;Zbtb20-201;Zbtb20-203;Zbtb20-214;Zbtb20-213;Zbtb20-219;Zbtb20-216,Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,17,98,56490,ENSMUSG00000022708,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13365,cg06358839,0.00000754,0.00000484,1.559827349,0.119820956,gain,ns,0.00000341,0.00000822,0.414898273,0.678503358,pos,ns,0.000637962,0.002406962,0.265048661,0.791148129,pos,ns,0.101742195,-0.000107047,0.0000828,-1.293222032,0.196897142,neg,ns,0.051035585,Nr2f2,Nr2f2_Intergenic_downstream,7,70346524,70346573,70346524,70346525,50,-,CGCTGGGAGCAATAAGTCCATTTAAAAGCCCTTTATTTAAAAGGAACAAA,Distal Intergenic,7,70353074,70355237,2164,2,Nr2f2-203,8713,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,19,69,11819,ENSMUSG00000030551,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
9106,cg05399958,0.000000606,0.00000054,1.120370067,0.263423314,gain,ns,0.000000381,0.000000918,0.414828892,0.678554098,pos,ns,0.000420185,0.000269009,1.561972145,0.1193148,pos,ns,0.923305683,-0.0000148,0.00000925,-1.598483724,0.110954077,neg,ns,0.013669124,Samd4,Samd4_Exon,14,46884826,46884875,46884874,46884875,50,+,GTTTCGCGACCAGGTCGGGGTGCTGGCGGGCTGGTTTAAGGGCTGGAACG,"Exon (Samd4-201/Samd4, exon 2 of 13)",14,46882854,47103150,220297,1,Samd4-201,1972,Samd4-201;Samd4-211;Samd4-202;Samd4-208;Samd4-206,Samd4;Samd4;Samd4;Samd4;Samd4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,16,74480,ENSMUSG00000021838,conserved gene but different region,14,46884695,46885193,499,*,499,47,0.703406814,0.76473849,0.094188377,1.18E-34,CpGisland,TRUE,U3,Pr-B
16857,cg08647096,0.00000535,0.0000081,0.660042603,0.50971659,gain,ns,0.00000571,0.0000138,0.414733385,0.678623946,pos,ns,0.007560787,0.004032775,1.874834946,0.061755506,pos,ns,1.209324318,-0.000107434,0.000138687,-0.774650524,0.439136629,neg,ns,0.096350263,Gm10095,Gm10095_Intergenic_downstream,12,86802386,86802435,86802386,86802387,50,+,CGCGTATAGTTACAGTTTAATCTTGGAAATGCCAGACAGCTGTTCCCCGT,Distal Intergenic,12,86845778,86846467,690,2,Gm10095-201,44032,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,100042650,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
12106,cg02756755,-0.00000144,0.000000574,-2.500735691,0.012909462,loss,ns,0.000000405,0.000000976,0.414689748,0.678655861,pos,ns,0.000158341,0.000285815,0.553998782,0.579979072,pos,ns,0.236587677,-0.0000217,0.00000983,-2.210170027,0.027823613,neg,ns,0.013202007,Pias1,Pias1_Exon,9,62980802,62980851,62980802,62980803,50,+,CGTCTCCGCGGCCGAATATTAGAAGTGAATTCGAGCTGCGCTTTACCTTT,Promoter (<=1kb),9,62878368,62980879,102512,2,Pias1-201,28,Pias1-201;Pias1-202;Pias1-205,Pias1;Pias1;Pias1,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,12,56469,ENSMUSG00000032405,conserved gene but different region,9,62980517,62981139,623,*,623,66,0.706260032,0.90840403,0.105939005,4.79E-52,CpGisland,TRUE,NA,NRS
13532,cg11420834,-7.63E-08,0.00000122,-0.062406407,0.95027941,loss,ns,0.000000862,0.00000208,0.414688329,0.678656898,pos,ns,0.001292923,0.000608908,2.123346607,0.034516722,pos,ns,1.461970451,-0.0000374,0.0000209,-1.784514518,0.075317946,neg,ns,0.967372497,Gm10172,Gm10172_Intergenic_downstream,7,71190240,71190289,71190240,71190241,50,-,CGCTTAATTGGCCGTATTGTCTCCAAAAGTTAATTGGTTACTTAGTCCAG,Distal Intergenic,7,71332363,71332921,559,2,Gm10172-201,142681,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,31,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1142,cg02188837,0.000051,0.0000141,3.631385457,0.000329734,gain,ns,0.0000099,0.0000239,0.414669585,0.678670607,pos,ns,0.027066946,0.006993129,3.870505521,0.000132449,pos,ns,3.877950183,-0.000986857,0.000240493,-4.103474286,0.0000521,neg,ns,0.535305837,Rpl23a-ps13,Rpl23a-ps13_Intergenic_upstream,X,11798076,11798125,11798124,11798125,50,-,GAGCATGGGACAAATGACAGCATGGCCTGAATGCAGCCCAGACGTCATCG,Distal Intergenic,20,11867265,11867705,441,1,Rpl23a-ps13-201,-69189,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,13,14,628338,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
2809,cg19028261,-0.0000186,0.00000638,-2.91090245,0.003864999,loss,ns,0.00000449,0.0000108,0.41463216,0.678697979,pos,ns,0.002129653,0.003173427,0.671089378,0.502663308,pos,ns,0.298722815,-0.000233203,0.000109134,-2.136851372,0.033392617,neg,ns,0.578933745,Ccdc178,Ccdc178_Intron,18,21872379,21872428,21872427,21872428,50,-,AAGCCTGCAGGATTCCAATGGGGAGCCGAGTAATGAGCTCTCAGCATTCG,"Intron (Ccdc178-204/Ccdc178, intron 22 of 23)",18,21810893,22171442,360550,2,Ccdc178-204,299014,Ccdc178-204;Ccdc178-201;Ccdc178-202,Ccdc178;Ccdc178;Ccdc178,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,19,21,70950,ENSMUSG00000024306,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27523,cg26121849,-0.0000119,0.00000329,-3.606845529,0.000361128,loss,ns,-0.00000231,0.00000558,-0.414598145,0.678722857,neg,ns,-0.001131588,0.001635643,-0.691830494,0.489561606,neg,ns,0.310192649,-0.0000184,0.0000562,-0.32732187,0.743645375,neg,ns,0.962533293,Gm5265,Gm5265_Intergenic_downstream,1,169060678,169060727,169060678,169060679,50,-,CGACATACTGTCGCTCAGACAAGTACTGTTCTTAATGGGTTTATGGGAAA,Distal Intergenic,1,169453528,169453869,342,2,Gm5265-201,393191,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,13,13,383613,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8061,cg03791373,0.0000547,0.00000542,10.08452752,7.19E-21,gain,yes,-0.00000382,0.00000922,-0.414549527,0.678758417,neg,ns,0.005637052,0.002699865,2.087901738,0.037622716,pos,ns,1.424549861,0.0000606,0.0000928,0.653000159,0.514240158,pos,ns,0.13822075,Pax5,Pax5_Promoter,4,44710736,44710785,44710736,44710737,50,+,CGTCCGAAGGCACCGTGAAATGATTAAGGAACTAAAGAGCTTCTCGCCAT,Promoter (<=1kb),4,44524757,44710487,185731,2,Pax5-201,-249,Pax5-201;Pax5-202;Pax5-203;Pax5-204;Pax5-205;Pax5-207;Pax5-206;Pax5-209;Pax5-210;Pax5-212;Pax5-213;Pax5-214;Pax5-215,Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5,0;0;0;0;0;0;0;0;0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,10,45,18507,ENSMUSG00000014030,conserved gene but different region,4,44710639,44710987,349,*,349,27,0.601719198,0.855004083,0.077363897,8.51E-18,CpGisland,TRUE,NA,NRS
12727,cg06156376,0.0000191,0.00000241,7.942203072,3.69E-14,gain,yes,-0.00000169,0.00000409,-0.414202219,0.679012461,neg,ns,0.003113099,0.00119861,2.597258047,0.009845351,pos,ns,2.006768801,-0.000115183,0.0000412,-2.794338721,0.005524504,neg,ns,0.091861682,Rsrc1,Rsrc1_fiveUTR,3,66981509,66981558,66981557,66981558,50,-,CACTTTCTGGTCAAAAGACTTGGAGACGAACGCCGTAAGTTCTTCCATCG,Promoter (<=1kb),3,66981390,67356559,375170,1,Rsrc1-206,119,Rsrc1-206;Rsrc1-207;Rsrc1-203;Rsrc1-208;Rsrc1-202;Rsrc1-201;Rsrc1-209;Rsrc1-205;Rsrc1-204;Shox2-203;Shox2-201;Shox2-202;Shox2-204;Shox2-205,Rsrc1;Rsrc1;Rsrc1;Rsrc1;Rsrc1;Rsrc1;Rsrc1;Rsrc1;Rsrc1;Shox2;Shox2;Shox2;Shox2;Shox2,0;-4112;0;0;0;0;0;0;-4420;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,37,66880,ENSMUSG00000034544,conserved gene and region,3,66981535,66981613,79,*,79,13,0.70886076,1.426388889,0.164556962,2.70E-13,CpGisland,TRUE,U3,Pr-B
6631,cg20488057,-0.0000157,0.0000116,-1.356186607,0.176026762,loss,ns,-0.00000816,0.0000197,-0.414183359,0.679026258,neg,ns,-0.01873217,0.005775211,-3.243547523,0.001309284,neg,ns,2.882966189,0.000417636,0.000198609,2.102807037,0.036288607,pos,ns,0.783736118,Dennd1a,Dennd1a_Intron,2,37842278,37842327,37842326,37842327,50,-,ATGCAAATGTGTTTGTCACTTTGACAGCACGTCTCAATTAAGGCATCTCG,"Intron (Dennd1a-201/Dennd1a, intron 19 of 21)",2,37798991,38287375,488385,2,Dennd1a-201,445048,Dennd1a-201;Dennd1a-206;Dennd1a-207,Dennd1a;Dennd1a;Dennd1a,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,46,227801,ENSMUSG00000035392,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1577,cg23975882,-0.0000521,0.0000091,-5.731713787,2.36E-08,loss,yes,-0.0000064,0.0000155,-0.414128493,0.679066393,neg,ns,-0.008068099,0.004527247,-1.782120075,0.075708355,neg,ns,1.120856189,-0.0000732,0.000155692,-0.469844405,0.63879652,neg,ns,0.691805381,Zfp521,Zfp521_Intron,18,13787489,13787538,13787537,13787538,50,+,GAAGTCTTCAGTAATTCAATCCCTGTGGAAGCTTCTTCACACTGTTTGCG,"Intron (Zfp521-201/Zfp521, intron 5 of 7)",18,13687013,13972787,285775,2,Zfp521-201,185249,Zfp521-201;Zfp521-205;Zfp521-204,Zfp521;Zfp521;Zfp521,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,81,225207,ENSMUSG00000024420,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27652,cg00540391,0.0000375,0.00000563,6.666493578,1.20E-10,gain,yes,0.00000396,0.00000956,0.413940913,0.679203621,pos,ns,0.010717186,0.002799897,3.827707169,0.000156473,pos,ns,3.805560031,-0.000209901,0.0000963,-2.179924476,0.030015136,neg,ns,0.113665734,Edn3,Edn3_fiveUTR,2,174760963,174761012,174761011,174761012,50,+,GTTCATGGAGCCGGGGCTGTGGCTCCTTTTCGGGCTCACAGTGACCTCCG,Promoter (<=1kb),2,174760619,174784042,23424,1,Edn3-201,344,Edn3-201;Edn3-203;Edn3-202,Edn3;Edn3;Edn3,0;0;-40,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,1,13616,ENSMUSG00000027524,conserved gene but different region,2,174760521,174761098,578,*,578,48,0.685121107,0.707700941,0.083044983,1.18E-32,CpGisland,TRUE,NA,NRS
5897,cg24287791,-0.00011737,0.0000208,-5.634395269,3.95E-08,loss,yes,-0.0000146,0.0000354,-0.413914063,0.679223265,neg,ns,0.046772882,0.010367775,4.511371164,0.00000915,pos,ns,5.038465875,-0.00319675,0.000356547,-8.965860314,2.97E-17,neg,yes,0.443437551,Adcy5,Adcy5_Intron,16,35179306,35179355,35179354,35179355,50,+,TTTTTGGCTAAATTAACATTTGGCATTTCAGGGTGCTGGCCCCACGCCCG,"Intron (Adcy5-201/Adcy5, intron 1 of 20)",16,35154877,35305738,150862,1,Adcy5-201,24429,Adcy5-201,Adcy5,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,4,224129,ENSMUSG00000022840,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
365,cg17541971,-0.0000577,0.0000105,-5.514038473,0.000000074,loss,yes,0.00000736,0.0000178,0.413820516,0.679291706,pos,ns,-0.010002805,0.00520764,-1.920794337,0.05567467,neg,ns,1.254342346,0.000146933,0.00017909,0.820440905,0.412595218,pos,ns,0.869002513,Zfhx4,Zfhx4_Exon,3,5242459,5242508,5242507,5242508,50,+,CTCCTGTGTGTCCAAAGATGTCCCTAACAATGTGGACTTGTCCAAATTCG,"Exon (Zfhx4-203/Zfhx4, exon 2 of 11)",3,5218526,5413165,194640,1,Zfhx4-203,23933,Zfhx4-203;Zfhx4-202;Zfhx4-201;Zfhx4-204;Zfhx4-205,Zfhx4;Zfhx4;Zfhx4;Zfhx4;Zfhx4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,23,77,80892,ENSMUSG00000025255,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14335,cg08129763,-0.00000289,0.00000182,-1.586268212,0.113697953,loss,ns,-0.00000128,0.00000309,-0.413747959,0.679344792,neg,ns,0.000697438,0.000906717,0.769189987,0.442366184,pos,ns,0.354218079,-0.0000376,0.0000312,-1.204802886,0.229198368,neg,ns,0.082818417,Hic1,Hic1_Exon,11,75173689,75173738,75173689,75173690,50,+,CGTGGCTTTCGATTGTTACTGTGGGAACTGGAGGTAACAGTCTACAGCCA,Promoter (4-5kb),11,75164565,75169519,4955,2,Hic1-201,-4170,Dph1-201;Dph1-205;Dph1-204;Hic1-201;Ovca2-201;Ovca2-202,Dph1;Dph1;Dph1;Hic1;Ovca2;Ovca2,0;0;7574;0;5097;5049,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,10,15248,ENSMUSG00000043099,mapped to different genes,11,75173365,75173778,414,*,414,46,0.719806763,0.891573034,0.111111111,1.73E-37,CpGisland,TRUE,U3,Pr-B
23994,cg09052652,-0.000000321,0.00000151,-0.212683066,0.831713961,loss,ns,0.00000106,0.00000256,0.413672006,0.679400364,pos,ns,-0.000228947,0.000750984,-0.304862234,0.760675653,neg,ns,0.118800484,-0.0000125,0.0000258,-0.48325164,0.629258201,neg,ns,0.975094908,Atxn2,Atxn2_Exon,5,121781416,121781465,121781416,121781417,50,+,CGGGCAGCCACCCCTACACGGCCGCCCTCCAGGCCCCCCTCGCGGCCATC,"Exon (Atxn2-201/Atxn2, exon 10 of 25)",5,121711609,121814950,103342,1,Atxn2-201,69807,Atxn2-201;Atxn2-220;Atxn2-209;Atxn2-208;Atxn2-219;Atxn2-214;Atxn2-202,Atxn2;Atxn2;Atxn2;Atxn2;Atxn2;Atxn2;Atxn2,0;0;0;0;0;0;-3609,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,16,20239,ENSMUSG00000042605,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15944,cg17834893,-0.0000109,0.00000389,-2.805770469,0.005337019,loss,ns,0.00000273,0.00000661,0.413527704,0.679505951,pos,ns,-0.001113347,0.001937071,-0.574757701,0.565872047,neg,ns,0.247281759,-0.000166826,0.0000666,-2.504300971,0.0127827,neg,ns,0.880986977,Adgrl1,Adgrl1_threeUTR,8,83938499,83938548,83938547,83938548,50,-,GCGGCCTTTGAGAAGATGATCATCTCAGAGCTGGTGCACAACAACCTGCG,3' UTR,8,83900105,83941954,41850,1,Adgrl1-207,38394,Adgrl1-207;Adgrl1-202;Adgrl1-201;Adgrl1-205;Adgrl1-210;Adgrl1-204;Adgrl1-209;Adgrl1-208;Adgrl1-203,Adgrl1;Adgrl1;Adgrl1;Adgrl1;Adgrl1;Adgrl1;Adgrl1;Adgrl1;Adgrl1,0;0;0;0;0;0;3922;2344;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,4,330814,ENSMUSG00000013033,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7969,cg01008025,0.0000282,0.00000353,7.977794235,2.91E-14,gain,yes,-0.00000248,0.000006,-0.413517255,0.679513596,neg,ns,0.006005159,0.001758794,3.414361256,0.000724383,pos,ns,3.140031739,-0.000170563,0.0000605,-2.819930015,0.00511281,neg,ns,0.061522949,Pax2,Pax2_Intergenic_upstream,19,44671159,44671208,44671207,44671208,50,-,CCTTCCGCGGAGAGCGCTGCCTTCCCAATTCCCAGTGGAAAAATTCTGCG,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-84886,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,19,44671150,44671210,61,*,61,7,0.62295082,1.196078431,0.114754098,0.00000522,CpGisland,TRUE,U13,Hc-P
15571,cg14701342,0.0000296,0.00000497,5.950325842,7.23E-09,gain,yes,0.00000349,0.00000844,0.413450958,0.679562108,pos,ns,0.002003539,0.002472573,0.810305104,0.418386437,pos,ns,0.378422402,0.000137397,0.000085,1.615835298,0.107147135,pos,ns,0.88318511,Gm50297,Gm50297_Intergenic_downstream,18,81852516,81852565,81852564,81852565,50,+,TTAACAGAAATCCTATACACTCCACTTTGTCAGCAGTTTTGAATTCATCG,Distal Intergenic,18,82261062,82261262,201,2,Gm50297-201,408697,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,17,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24183,cg09461098,0.0000104,0.0000141,0.737965528,0.461093655,gain,ns,-0.00000987,0.0000239,-0.413077054,0.679835733,neg,ns,0.019018052,0.007000877,2.716524148,0.006967576,pos,ns,2.156918273,-0.000891333,0.00024076,-3.702171442,0.000252944,neg,ns,0.373242055,Tnrc6a,Tnrc6a_Exon,7,123186638,123186687,123186686,123186687,50,+,CAGCCAGTCCTCCAGGTTCAATAGGAGATGGCTGGCCACGTGCCAAATCG,"Exon (Tnrc6a-201/Tnrc6a, exon 18 of 24)",7,123124177,123193987,69811,1,Tnrc6a-203,62461,Tnrc6a-203;Tnrc6a-201;Tnrc6a-205;Tnrc6a-208,Tnrc6a;Tnrc6a;Tnrc6a;Tnrc6a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,17,24,233833,ENSMUSG00000052707,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20302,cg27309940,0.0000597,0.00000679,8.788811435,1.06E-16,gain,yes,-0.00000476,0.0000115,-0.413027015,0.679872354,neg,ns,0.013033668,0.003379272,3.856945799,0.000139655,pos,ns,3.85494479,-0.000397341,0.000116213,-3.419074933,0.000712401,neg,ns,0.164451216,Hoxc5,Hoxc5_Exon,15,102991202,102991251,102991250,102991251,50,+,GATGAGACCCCACGGTGAGAAGCCTTTTCTCTTTCCCCCTTGGTCTCCCG,"Exon (Hoxc8-201/Hoxc8, exon 1 of 2)",15,102967443,103015676,48234,1,Hoxc5-202,23759,Hoxc5-202;Hoxc8-201;Hoxc8-202,Hoxc5;Hoxc8;Hoxc8,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,72,134,15424,ENSMUSG00000022485,conserved gene but different region,15,102990435,102991303,869,*,869,73,0.63406214,0.844205792,0.084004603,1.12E-49,CpGisland,TRUE,U13,Hc-P
26911,cg26387878,-0.0000212,0.00000738,-2.875936426,0.004307374,loss,ns,0.00000518,0.0000125,0.41301621,0.679880262,pos,ns,-0.005065565,0.003672079,-1.379481636,0.168740578,neg,ns,0.772780467,0.000153435,0.000126282,1.215015823,0.225284656,pos,ns,0.718970654,Prdm16,Prdm16_Intron,4,154569065,154569114,154569065,154569066,50,-,CGAGATTGATGCTGAGCTGACAGGGCAGGTAGGTGACTTGTGATGACATT,"Intron (Prdm16-201/Prdm16, intron 1 of 16)",4,154316125,154636866,320742,2,Prdm16-201,67752,Prdm16-201;Prdm16-202;Prdm16-203;Prdm16-204;Prdm16-205;Prdm16-206;Prdm16-210;Prdm16-207;Prdm16-212,Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,32,70673,ENSMUSG00000039410,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22150,cg19383871,0.00000317,0.00000309,1.024666397,0.306319527,gain,ns,-0.00000217,0.00000526,-0.412969898,0.679914157,neg,ns,-0.001734594,0.001540354,-1.126100758,0.260993878,neg,ns,0.58336968,0.0000221,0.000053,0.417372532,0.676694847,pos,ns,0.939995228,Agbl4,Agbl4_Exon,4,111433370,111433419,111433370,111433371,50,-,CGCAACTACCAGCAGCAACAGGAAGAGATGCGCCACCTCCAGCAGGAGCT,"Exon (Bend5-201/Bend5, exon 3 of 6)",4,110397698,111567010,1169313,1,Agbl4-205,1035672,Agbl4-205;Agbl4-206;Agbl4-201;Agbl4-202;Agbl4-209;Bend5-201;Bend5-204;Bend5-203;Bend5-206;Bend5-202,Agbl4;Agbl4;Agbl4;Agbl4;Agbl4;Bend5;Bend5;Bend5;Bend5;Bend5,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,Exon,10,16,78933,ENSMUSG00000061298,mapped to different genes,4,111433302,111433553,252,*,252,12,0.599206349,0.540966011,0.047619048,0.00000628,CpGisland,TRUE,U11,Tr-P
19409,cg02462519,-0.0000164,0.00000492,-3.325255907,0.000989434,loss,ns,-0.00000345,0.00000836,-0.412868975,0.679988023,neg,ns,-0.000671261,0.002448786,-0.274120021,0.784174955,neg,ns,0.105587032,-0.000108268,0.0000842,-1.285633459,0.199530559,neg,ns,0.054929718,Dusp6,Dusp6_Promoter,10,99263038,99263087,99263038,99263039,50,-,CGCTGTTGCAGCTTGTTTGCACTGGGGCTTATCCGGAGCGGAAATTCCTT,Promoter (<=1kb),10,99263231,99267489,4259,1,Dusp6-204,-193,Dusp6-201;Dusp6-204;Dusp6-202;Dusp6-203,Dusp6;Dusp6;Dusp6;Dusp6,0;0;0;-2554,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,6,8,67603,ENSMUSG00000019960,conserved gene but different region,10,99263000,99263091,92,*,92,8,0.608695652,1.001360544,0.086956522,0.00000628,CpGisland,TRUE,U1,Pr-A
6131,cg03768031,-0.00000849,0.00000506,-1.678271495,0.094301861,loss,ns,0.00000355,0.0000086,0.412863606,0.679991953,pos,ns,0.001193756,0.002518671,0.473962777,0.635860092,pos,ns,0.196638432,-0.0000195,0.0000866,-0.225363843,0.821844731,neg,ns,0.884976698,Rpl17-ps9,Rpl17-ps9_Intergenic_downstream,7,36134438,36134487,36134486,36134487,50,-,TCATGTCAATTACAATTGCCAGCCTGTGACAGTTAAAATAATTGTATACG,Distal Intergenic,7,36118274,36118828,555,1,Rpl17-ps9-201,16213,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,22,100043872,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21482,cg15357236,0.00000171,0.00000273,0.62721172,0.530982136,gain,ns,-0.00000191,0.00000463,-0.412861938,0.679993174,neg,ns,-0.001487358,0.001357362,-1.095771032,0.274029541,neg,ns,0.562202617,0.00000608,0.0000467,0.130261486,0.896444035,pos,ns,0.951659421,Zfhx3,Zfhx3_Promoter,8,107940322,107940371,107940370,107940371,50,+,ATACTATTAGGCTGTCTGGTTATGTATTTTTTATGAGGCCATACAAGACG,Promoter (2-3kb),8,107942644,108961630,1018987,1,Zfhx3-204,-2273,Zfhx3-204,Zfhx3,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10705,cg16513896,-0.00000106,0.00000208,-0.512755021,0.608487864,loss,ns,-0.00000146,0.00000353,-0.412834036,0.680013596,neg,ns,-0.000903329,0.001033638,-0.873931912,0.382831838,neg,ns,0.416991952,-0.0000659,0.0000355,-1.853712355,0.064730159,neg,ns,0.038994232,Zfp608,Zfp608_Promoter,18,54992675,54992724,54992723,54992724,50,+,TGGCTAGCTGCTTTCTCTTGGCTACTGTAGGGGGTTGAGATATACACACG,Promoter (<=1kb),18,54888723,54992555,103833,2,Zfp608-203,-120,Zfp608-201;Zfp608-203,Zfp608;Zfp608,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,3,32,269023,ENSMUSG00000052713,conserved gene and region,18,54992723,54992854,132,*,132,9,0.590909091,0.939130435,0.068181818,0.00000904,CpGisland,TRUE,NA,NRS
1556,cg07493173,0.00000457,0.00000919,0.496871018,0.619632187,gain,ns,-0.00000644,0.0000156,-0.412776733,0.680055539,neg,ns,0.005137882,0.004573782,1.123333288,0.262165152,pos,ns,0.581425037,-0.000481813,0.000157292,-3.063174887,0.002382144,neg,ns,0.658043075,Zfp521,Zfp521_Intron,18,13704343,13704392,13704343,13704344,50,+,CGCTGATGGAGGCCTAGGGGAAGAGGCCCAGGAGTTATTCAATCAGCCCG,"Intron (Zfp521-201/Zfp521, intron 7 of 7)",18,13687013,13972787,285775,2,Zfp521-201,268395,Zfp521-201;Zfp521-205;Zfp521-204,Zfp521;Zfp521;Zfp521,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,81,225207,ENSMUSG00000024420,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10956,cg12874590,0.00000168,0.00000291,0.577776402,0.563834514,gain,ns,0.00000204,0.00000495,0.412754355,0.680071918,pos,ns,0.005147826,0.001449904,3.550460593,0.000444219,pos,ns,3.352403185,-0.0000458,0.0000499,-0.917936234,0.359365866,neg,ns,0.933450745,Tcf7l2,Tcf7l2_Intron,19,55914773,55914822,55914821,55914822,50,+,TCACTTGTGCCACCCTGTGACCCCCTTTAGATTGAGATGTTGGAGCTCCG,"Intron (Tcf7l2-213/Tcf7l2, intron 7 of 13)",19,55741820,55933229,191410,1,Tcf7l2-213,172953,Tcf7l2-213;Tcf7l2-201;Tcf7l2-208;Tcf7l2-211;Tcf7l2-212;Tcf7l2-206;Tcf7l2-204;Tcf7l2-205;Tcf7l2-222;Tcf7l2-215;Tcf7l2-214;Tcf7l2-207;Tcf7l2-202;Tcf7l2-209;Tcf7l2-210;Tcf7l2-217;Tcf7l2-220;Tcf7l2-218;Tcf7l2-203;Tcf7l2-216;Tcf7l2-219;Tcf7l2-221,Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,55,88,21416,ENSMUSG00000024985,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5142,cg20169907,0.00000463,0.0000115,0.403455963,0.686890964,gain,ns,-0.00000805,0.0000195,-0.412719593,0.680097363,neg,ns,0.005902791,0.005710729,1.033631767,0.302114019,pos,ns,0.519829122,-0.00078589,0.000196392,-4.001649506,0.0000787,neg,ns,0.26656263,Bach2,Bach2_Intron,4,32531578,32531627,32531578,32531579,50,-,CGTAAAGATGTGATCCCAGGGGCAGCAGCTGCTGATGCAAGCTGAAAATA,"Intron (Bach2-202/Bach2, intron 4 of 6)",4,32238804,32586104,347301,1,Bach2-202,292774,Bach2-202;Bach2-201;Bach2-207,Bach2;Bach2;Bach2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,14,12014,ENSMUSG00000040270,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
21228,cg03008741,-0.00000528,0.00000319,-1.654571951,0.099023433,loss,ns,0.00000224,0.00000542,0.412623044,0.680168036,pos,ns,-0.001732279,0.001587002,-1.091541698,0.275882215,neg,ns,0.559276296,0.0000322,0.0000546,0.590215438,0.555476207,pos,ns,0.926986933,Has3,Has3_Exon,8,106878232,106878281,106878232,106878233,50,+,CGCTGGAGCAAGTCTTACTTCCGGGAGTGGCTCTACAACTCTCTGTGGTT,"Exon (Has3-201/Has3, exon 4 of 4)",8,106870242,106882902,12661,1,Has3-201,7990,Has3-201;Has3-203;Has3-202,Has3;Has3;Has3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,15118,ENSMUSG00000031910,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6632,cg15439160,-0.000047,0.0000131,-3.579678678,0.000399149,loss,ns,-0.00000921,0.0000223,-0.412532341,0.680234431,neg,ns,-0.012753346,0.006541708,-1.949543764,0.05213197,neg,ns,1.282895867,0.000171086,0.000224969,0.760488395,0.447540724,pos,ns,0.717630843,Dennd1a,Dennd1a_Intron,2,37842280,37842329,37842328,37842329,50,-,GCAAATGTGTTTGTCACTTTGACAGCACGTCTCAATTAAGGCATCTCGCG,"Intron (Dennd1a-201/Dennd1a, intron 19 of 21)",2,37798991,38287375,488385,2,Dennd1a-201,445046,Dennd1a-201;Dennd1a-206;Dennd1a-207,Dennd1a;Dennd1a;Dennd1a,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,46,227801,ENSMUSG00000035392,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21587,cg14167113,0.000000833,0.00000225,0.369838149,0.711755616,gain,ns,0.00000158,0.00000383,0.412458018,0.680288838,pos,ns,0.001002732,0.001120855,0.894613545,0.371687763,pos,ns,0.429821737,-0.0000178,0.0000385,-0.462330805,0.644168433,neg,ns,0.954015204,Zfhx3,Zfhx3_Intron,8,108467995,108468044,108468043,108468044,50,+,GAAACTAATTACAAGATATAATTAAACTGTGACACAAAGATATTATACCG,"Intron (Zfhx3-204/Zfhx3, intron 3 of 15)",8,107942644,108961630,1018987,1,Zfhx3-204,525351,Zfhx3-204,Zfhx3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,114,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18841,cg08585518,-0.000123263,0.0000173,-7.136992706,6.80E-12,loss,yes,-0.0000121,0.0000293,-0.412380151,0.680345841,neg,ns,0.058950981,0.008595926,6.85801396,3.79E-11,pos,yes,10.42128434,-0.001653854,0.000295613,-5.594654469,4.86E-08,neg,yes,0.397874789,Rsf1,Rsf1_Exon,7,97653062,97653111,97653062,97653063,50,+,CGAGTTGGCTGAGACTCTTGCACTCCTGAAAGCACAAATTGATCCTGTAC,"Exon (Rsf1-206/Rsf1, exon 5 of 15)",7,97579897,97686420,106524,1,Rsf1-206,73165,Gm45186-201;Rsf1-206;Rsf1-201;Rsf1-208,Gm45186;Rsf1;Rsf1;Rsf1,1642;0;0;-4169,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,6,233532,ENSMUSG00000035623,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21274,cg14266291,-0.00000147,0.000000996,-1.47059134,0.142415927,loss,ns,0.000000698,0.00000169,0.412301158,0.680403671,pos,ns,0.000773271,0.000495914,1.559283397,0.119949593,pos,ns,0.92100122,-0.0000143,0.0000171,-0.83991911,0.401601036,neg,ns,0.970988128,Ssbp3,Ssbp3_Exon,4,107039963,107040012,107040011,107040012,50,+,ATTCAACAAATTCCAGTGACAACATCTACACAATGATTAATCCAGTGCCG,"Exon (Ssbp3-201/Ssbp3, exon 14 of 18)",4,106911470,107049694,138225,1,Ssbp3-201,128493,Ssbp3-201;Ssbp3-215;Ssbp3-202;Ssbp3-203;Ssbp3-213;Ssbp3-211;Ssbp3-212;Ssbp3-204;Ssbp3-210;Ssbp3-208;Ssbp3-217,Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,18,72475,ENSMUSG00000061887,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8244,cg20252363,-0.0000525,0.0000119,-4.408807841,0.0000144,loss,ns,0.00000834,0.0000202,0.412220688,0.680462584,pos,ns,-0.006829706,0.005928076,-1.152094973,0.250169743,neg,ns,0.601765217,-0.000000181,0.000203866,-0.000889117,0.999291159,neg,ns,0.783584289,Slf2,Slf2_Intergenic_upstream,19,44900421,44900470,44900421,44900422,50,-,CGTTCTGCTCCGTACATCACAGCCAACGATGAAAAGTTCTAGAGCTGGGA,Distal Intergenic,19,44931151,44983188,52038,1,Slf2-201,-30730,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,15,17,226151,ENSMUSG00000036097,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
7846,cg18517029,0.000107319,0.0000102,10.4986964,2.91E-22,gain,yes,-0.00000716,0.0000174,-0.412179372,0.680492832,neg,ns,-0.001421997,0.00508768,-0.279498228,0.780048884,neg,ns,0.10787818,0.00028688,0.000174965,1.63964264,0.102093833,pos,ns,0.741694668,Wnt8b,Wnt8b_Intergenic_downstream,19,44514853,44514902,44514901,44514902,50,+,CTTCTACCCCCACTGGAGTCAATGAAAACTTCATTTCACATGCTAATCCG,Downstream (2-3kb),19,44510321,44511990,1670,1,Wnt8b-202,4532,Sec31b-201;Sec31b-202;Sec31b-203;Wnt8b-201;Wnt8b-202,Sec31b;Sec31b;Sec31b;Wnt8b;Wnt8b,30962;30945;5691;21381;4532,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,1,1,22423,ENSMUSG00000036961,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
735,cg22664982,-0.0000251,0.0000105,-2.39758561,0.017094905,loss,ns,0.00000734,0.0000178,0.41208567,0.680561436,pos,ns,-0.016736048,0.00521517,-3.209109093,0.001470885,neg,ns,2.832421254,0.000458063,0.000179349,2.554028426,0.011126542,pos,ns,0.191638891,Nipbl,Nipbl_Intron,15,8442485,8442534,8442485,8442486,50,+,CGGATTTATAGCATTAAAAACATGCCTAGTACGTGACAGCTATATTAACT,"Intron (Nipbl-201/Nipbl, intron 1 of 46)",15,8290617,8444463,153847,2,Nipbl-201,1929,Nipbl-201,Nipbl,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,36,71175,ENSMUSG00000022141,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20816,cg05733595,0.0000136,0.00000332,4.09486223,0.000054,gain,ns,0.00000232,0.00000564,0.412051811,0.680586226,pos,ns,0.004978935,0.001652733,3.012546708,0.002804093,pos,ns,2.552207542,-0.0000755,0.0000568,-1.329129789,0.184782523,neg,ns,0.096294155,Ndfip2,Ndfip2_Intergenic_downstream,14,105483524,105483573,105483572,105483573,50,-,CCAGGCAGGCGTGGGCAGGCCATCAGCTATGGCAACAGGAAACTGCCCCG,Distal Intergenic,14,105294546,105308869,14324,1,Ndfip2-203,189027,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,7,76273,ENSMUSG00000053253,mapped to different genes,14,105483533,105483732,200,*,200,11,0.565,0.705128205,0.055,0.00000463,CpGisland,TRUE,NA,NRS
13005,cg26294431,0.0000335,0.00000439,7.634480145,2.83E-13,gain,yes,0.00000307,0.00000746,0.412041786,0.680593566,pos,ns,0.008936455,0.002186141,4.08777674,0.0000555,pos,ns,4.255403622,-0.000169866,0.0000752,-2.259427364,0.024550949,neg,ns,0.084732614,Erbb4,Erbb4_Intron,1,69105175,69105224,69105223,69105224,50,-,CTCATTTGGACCAAAACAAACTCCTCCAAACTGCTACTGACTGCTAACCG,"Intron (Erbb4-201/Erbb4, intron 1 of 27)",1,68032186,69107756,1075571,2,Erbb4-201,2532,Erbb4-201;Erbb4-202;Erbb4-205,Erbb4;Erbb4;Erbb4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,13,13869,ENSMUSG00000062209,conserved gene and region,1,69105223,69105242,20,*,20,5,0.75,2,0.25,0.00000436,CpGisland,TRUE,U13,Hc-P
3176,cg15868686,-0.0000404,0.0000135,-2.997267405,0.002944304,loss,ns,-0.00000944,0.0000229,-0.412005861,0.680619869,neg,ns,-0.007363592,0.006713244,-1.09687527,0.273547235,neg,ns,0.56296767,-0.000391593,0.000230868,-1.696176162,0.090856423,neg,ns,0.083292454,Klf9,Klf9_Promoter,19,23140735,23140784,23140783,23140784,50,+,CATCAACCAACTTACTTTTGATTGGAAGGCTGGTTGCTGGGACTGTAGCG,Promoter (<=1kb),19,23141226,23168134,26909,1,Klf9-201,-442,Klf9-201;Klf9-202,Klf9;Klf9,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,13,16601,ENSMUSG00000033863,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
9349,cg09633555,-0.000013,0.00000792,-1.635916563,0.102871901,loss,ns,-0.00000554,0.0000135,-0.411879042,0.680712727,neg,ns,0.0013056,0.003942664,0.331146622,0.740757467,pos,ns,0.130323962,-0.00000582,0.000135588,-0.042906165,0.965803957,neg,ns,0.727920304,Id4,Id4_Intergenic_downstream,13,48284917,48284966,48284965,48284966,50,+,GCCTGTCCCACGCCACACCACTGCCTAATTGCACACTAATTGGACAAACG,Distal Intergenic,13,48261228,48266026,4799,1,Id4-201,23689,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,9,15904,ENSMUSG00000021379,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3566,cg17023750,-0.0000313,0.00000695,-4.499339235,0.00000965,loss,ns,-0.00000486,0.0000118,-0.4118418,0.680739996,neg,ns,-0.012056349,0.003459903,-3.484591763,0.000563914,neg,ns,3.248787141,0.000181212,0.000118986,1.52297235,0.128785043,pos,ns,0.816855983,Rps24,Rps24_Intergenic_downstream,14,24535073,24535122,24535073,24535074,50,-,CGGCTCTGTAATTTATGCCCAAGTGAATCCCAACAGGAACCAGAGGCCCT,Distal Intergenic,14,24491149,24491989,841,1,Rps24-209,43973,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,12,20088,ENSMUSG00000025290,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14578,cg14929217,-0.000000689,0.00000233,-0.295366643,0.767911543,loss,ns,0.00000163,0.00000397,0.411838116,0.680742694,pos,ns,-0.000510372,0.001161802,-0.439293149,0.660755189,neg,ns,0.179959418,0.0000248,0.00004,0.620321653,0.535501784,pos,ns,0.947875569,Osbpl6,Osbpl6_threeUTR,2,76595916,76595965,76595916,76595917,50,+,CGACACCTACTGGGAGCTTCGAAAGGACCCTGGGTTTAGCAAAGTAGACA,3' UTR,2,76406538,76600643,194106,1,Osbpl6-201,189378,Osbpl6-201;Osbpl6-202;Osbpl6-203;Osbpl6-208,Osbpl6;Osbpl6;Osbpl6;Osbpl6,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,3,99031,ENSMUSG00000042359,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22573,cg27295000,-0.00000763,0.00000424,-1.799145103,0.072968186,loss,ns,0.00000297,0.0000072,0.411822197,0.680754351,pos,ns,-0.002249771,0.002110034,-1.066225007,0.287151626,neg,ns,0.54188872,0.000199752,0.0000726,2.752777892,0.006257513,pos,ns,0.937789819,Wwox,Wwox_Intron,8,115243568,115243617,115243568,115243569,50,+,CGGGCCCAAATCTTACAGGCTTGTGTTGGCTTTGACCAATGAAGTAGAAC,"Intron (Wwox-201/Wwox, intron 8 of 8)",8,114439655,115352708,913054,1,Wwox-201,803913,Wwox-201;Wwox-209,Wwox;Wwox,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,32,32,80707,ENSMUSG00000004637,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13453,cg14689223,0.0000324,0.00000964,3.3562118,0.00088852,gain,ns,-0.00000674,0.0000164,-0.411815523,0.680759237,neg,ns,-0.000304531,0.004798034,-0.063469881,0.949433248,neg,ns,0.022535564,-0.0000432,0.000165004,-0.26151949,0.793865588,neg,ns,0.89867492,Mink1,Mink1_Exon,11,70607808,70607857,70607808,70607809,50,+,CGATCCCAGTCCCTGCAGGACCAGCCCACCCGAAACCTGGCTGCCTTCCC,Promoter (<=1kb),11,70607812,70608828,1017,1,Mink1-211,0,Mink1-201;Mink1-202;Mink1-205;Mink1-203;Mink1-204;Mink1-207;Mink1-208;Mink1-213;Mink1-210;Mink1-212;Mink1-211;Mink1-209;Mink1-206,Mink1;Mink1;Mink1;Mink1;Mink1;Mink1;Mink1;Mink1;Mink1;Mink1;Mink1;Mink1;Mink1,0;0;0;0;0;8820;0;0;0;0;0;-1881;-2194,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,7,50932,ENSMUSG00000020827,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7116,cg26970749,0.00000619,0.0000124,0.498763089,0.618300012,gain,ns,-0.00000868,0.0000211,-0.411776348,0.680787923,neg,ns,0.004988996,0.006177112,0.807658362,0.419906568,pos,ns,0.376847332,-0.0000839,0.00021243,-0.39502616,0.693095248,neg,ns,0.701783514,Zfpm2,Zfpm2_Intron,15,41064244,41064293,41064292,41064293,50,+,CAAAAAGAGATGTATTCTGTTGTGCTCTGTTTGATCAAGTGCTAAACCCG,"Intron (Zfpm2-201/Zfpm2, intron 5 of 7)",15,40655035,41104592,449558,1,Zfpm2-201,409209,Zfpm2-201;Zfpm2-203,Zfpm2;Zfpm2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,41,22762,ENSMUSG00000022306,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3218,cg20367539,-0.00000255,0.00000425,-0.60048332,0.548622912,loss,ns,0.00000298,0.00000723,0.411765099,0.68079616,pos,ns,0.013370311,0.002117215,6.31504707,9.35E-10,pos,ns,9.02909504,-0.000421062,0.0000728,-5.782952813,1.79E-08,neg,yes,0.891380816,Xpo1,Xpo1_fiveUTR,11,23261832,23261881,23261880,23261881,50,-,CAGTAATCTATGCCAGCAATTATGACAATGTTAGCAGACCATGCAGCTCG,5' UTR,11,23256041,23297597,41557,1,Xpo1-201,5791,Xpo1-201;Xpo1-204;Xpo1-203;Xpo1-206;Xpo1-202;Xpo1-205,Xpo1;Xpo1;Xpo1;Xpo1;Xpo1;Xpo1,0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,14,103573,ENSMUSG00000020290,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7192,cg18361104,-0.0000141,0.0000161,-0.871963872,0.383902911,loss,ns,0.0000113,0.0000274,0.411595744,0.680920176,pos,ns,-0.001331759,0.008029376,-0.165860851,0.868374574,neg,ns,0.061292901,0.000532425,0.00027613,1.928172413,0.054746797,pos,ns,0.461657885,Gm48736,Gm48736_Exon,9,41581960,41582009,41582008,41582009,50,-,GATGTTTACCGTTTAAATCCACGGGTTAGGCTCTTGGGAGCTGCGAGTCG,"Exon (Gm28119-201/Gm28119-201, exon 1 of 2)",9,41513525,41513780,256,2,Gm48736-201,-68229,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
294,cg15985773,-0.00000231,0.00000195,-1.186448123,0.236353858,loss,ns,-0.00000136,0.00000331,-0.411508034,0.680984409,neg,ns,0.000309477,0.00096837,0.319585486,0.749497842,pos,ns,0.125229613,0.0000306,0.0000333,0.919621869,0.358485413,pos,ns,0.934896302,Atad2b,Atad2b_Exon,12,5031501,5031550,5031501,5031502,50,-,CGGAGAAAATCAAGGCGGAGATCACAGTGGGGTAAAGGAATTATTAAGAA,"Exon (Atad2b-201/Atad2b, exon 28 of 31)",12,4917404,5047394,129991,1,Atad2b-201,114097,Atad2b-201,Atad2b,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,7,320817,ENSMUSG00000052812,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1270,cg25551677,0.0000752,0.0000082,9.167948562,6.87E-18,gain,yes,0.00000573,0.0000139,0.411444695,0.681030794,pos,ns,0.005596657,0.004081749,1.371141753,0.171322528,pos,ns,0.766185525,-0.0000392,0.000140371,-0.27925079,0.780238579,neg,ns,0.666681747,Bcor,Bcor_Intron,X,12152636,12152685,12152636,12152637,50,+,CGAAAGCAGCAGCCCAGGCAAATATGTAGCTATTAAAATTAATCGCCCCG,"Intron (Bcor-201/Bcor, intron 1 of 13)",20,12036743,12160355,123613,2,Bcor-201,7670,Bcor-201;Bcor-208,Bcor;Bcor,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,56,74,71458,ENSMUSG00000040363,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6183,cg15563057,-0.00000315,0.00000168,-1.873580656,0.061928913,loss,ns,0.00000117,0.00000286,0.411186012,0.681220252,pos,ns,-0.000287214,0.000836986,-0.343152385,0.731716412,neg,ns,0.135657204,0.0000144,0.0000288,0.500886473,0.616806473,pos,ns,0.052416801,Pura,Pura_Intron,18,36286970,36287019,36287018,36287019,50,+,GCTACTGTACTGGGGAGTCAGTGCCCTGTTACCGGGTCTCGTCTGTCTCG,"Intron (Pura-201/Pura, intron 1 of 1)",18,36281097,36292535,11439,1,Pura-201,5873,Pura-201,Pura,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,19,19290,ENSMUSG00000043991,conserved gene but different region,18,36286687,36288029,1343,*,1343,129,0.68652271,0.823041768,0.096053611,4.14E-95,CpGisland,TRUE,U1,Pr-A
2324,cg06796713,0.000324356,0.0000286,11.3290182,3.97E-25,gain,yes,-0.00002,0.0000486,-0.411008099,0.681350566,neg,ns,-0.002293743,0.014249722,-0.160967584,0.87222378,neg,ns,0.059372077,0.000687454,0.000490047,1.402833524,0.161667202,pos,ns,0.464097972,Meis1,Meis1_Exon,11,19016308,19016357,19016356,19016357,50,-,TGGAGGGGATGCCTACTCCATCCATGCCCCCGTAATGGGGTAGATCGTCG,"Exon (Meis1-206/Meis1, exon 2 of 10)",11,18879817,19018985,139169,2,Meis1-206,2628,Meis1-206;Meis1-202;Meis1-209;Meis1-201;Meis1-203;Meis1-208;Meis1-207;Meis1-204;Meis1-205,Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,21,88,17268,ENSMUSG00000020160,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20825,cg17375455,-0.0000367,0.00000703,-5.225963777,0.000000319,loss,yes,-0.00000491,0.0000119,-0.410937505,0.681402276,neg,ns,0.01905253,0.00349781,5.446988231,0.000000104,pos,ns,6.980954351,-0.000621079,0.000120289,-5.163206241,0.000000435,neg,yes,0.684719692,Apbb1,Apbb1_threeUTR,7,105565547,105565596,105565595,105565596,50,+,CATGCAGGCTGGTGGCGATGTTCTTGGCAGGTGCCTCACAGCGAAACACG,3' UTR,7,105558483,105581653,23171,2,Apbb1-217,16057,Apbb1-217;Apbb1-209;Apbb1-215;Apbb1-212;Apbb1-219;Apbb1-201;Apbb1-208;Apbb1-214;Apbb1-213;Apbb1-205;Apbb1-221;Apbb1-218;Apbb1-202;Apbb1-210;Apbb1-207;Apbb1-206;Apbb1-220;Apbb1-204;Apbb1-203;Apbb1-216,Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1,0;0;0;0;0;0;0;0;0;0;0;-42;0;0;3367;3669;3675;3677;0;3074,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,8,11785,ENSMUSG00000037032,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20687,cg17957186,0.0000071,0.00000186,3.825088046,0.00015807,gain,ns,0.0000013,0.00000315,0.410890223,0.68143691,pos,ns,0.001018103,0.000923521,1.102414886,0.271136462,pos,ns,0.566812075,0.0000118,0.0000318,0.372951697,0.709439271,pos,ns,0.038505559,Pou4f1,Pou4f1_Promoter,14,104468236,104468285,104468236,104468237,50,-,CGCTCTTATAGTGACCACCAGCAAGGACAGCGCAGGTGATGCACCTGTAG,Promoter (<=1kb),14,104461676,104467999,6324,2,Pou4f1-201,-286,Pou4f1-201;Pou4f1-202,Pou4f1;Pou4f1,0;-2871,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,6,31,18996,ENSMUSG00000048349,mapped to different genes,14,104467739,104468237,499,*,499,89,0.771543086,1.206296176,0.178356713,5.22E-94,CpGisland,TRUE,U3,Pr-B
5589,cg07080569,-0.00000251,0.00000319,-0.785652781,0.432671002,loss,ns,-0.00000223,0.00000542,-0.410883,0.681442201,neg,ns,-0.003413144,0.001589073,-2.14788405,0.03249778,neg,ns,1.488146303,0.00019219,0.0000546,3.516868726,0.00050192,pos,ns,0.862546151,Pbx3,Pbx3_Intron,2,34288688,34288737,34288736,34288737,50,-,TCCAAATGACCCCATTAAGCTGTAATTGCCTCAGCAGGCCTGCACTTTCG,"Intron (C79798-201/C79798-201, intron 1 of 1)",2,34171457,34372038,200582,2,Pbx3-202,83301,Pbx3-202;Pbx3-201;Pbx3-210;Pbx3-206;Pbx3-207;Pbx3-209;Pbx3-204;Pbx3-205;Pbx3-203,Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,82,18516,ENSMUSG00000038718,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15531,cg17820491,0.0000501,0.00000598,8.379480543,1.88E-15,gain,yes,0.00000417,0.0000102,0.410856106,0.681461902,pos,ns,0.013159944,0.002975113,4.423341997,0.0000135,pos,ns,4.870661702,-0.00026573,0.000102314,-2.597203636,0.009846877,neg,ns,0.115771305,Htr1b,Htr1b_Exon,9,81631628,81631677,81631676,81631677,50,+,TGGCTTTGCGCTCCCTAGCGGCCATGAGTTTCTTCTTTTCCAGCAGGGCG,"Exon (D430036J16Rik-203/D430036J16Rik-203, exon 1 of 3)",9,81628291,81633828,5538,2,Htr1b-202,2151,Htr1b-202;Htr1b-201,Htr1b;Htr1b,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,15551,ENSMUSG00000049511,conserved gene and region,9,81631636,81631956,321,*,321,23,0.582554517,0.871664699,0.07165109,1.70E-14,CpGisland,TRUE,U3,Pr-B
14540,cg05262155,0.00000207,0.00000267,0.77268841,0.440295524,gain,ns,0.00000187,0.00000454,0.410808885,0.681496493,pos,ns,0.001490357,0.001331116,1.119629795,0.26373828,pos,ns,0.57882683,-0.0000581,0.0000458,-1.268651603,0.205517155,neg,ns,0.072023689,Nrip1,Nrip1_fiveUTR,16,76373024,76373073,76373072,76373073,50,-,GAGTTCGGGGCTCTGCTGCAATGTCTGCGAGGCTGACTTTGAGCGCCTCG,Promoter (<=1kb),16,76290862,76373049,82188,2,Nrip1-201,0,Nrip1-202;Nrip1-201;Nrip1-208;Nrip1-207;Nrip1-205;Nrip1-203;Nrip1-206,Nrip1;Nrip1;Nrip1;Nrip1;Nrip1;Nrip1;Nrip1,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,8,268903,ENSMUSG00000048490,conserved gene but different region,16,76372209,76373156,948,*,948,139,0.778481013,0.969367938,0.146624473,1.33E-131,CpGisland,TRUE,U1,Pr-A
21680,cg03747401,0.000197831,0.0000105,18.80140083,3.70E-53,gain,yes,-0.00000734,0.0000179,-0.41071582,0.681564669,neg,ns,0.001424429,0.005236977,0.271994588,0.785807242,pos,ns,0.104683973,0.000729309,0.000180099,4.049485718,0.0000649,pos,ns,0.166701833,Rpl35a-ps4,Rpl35a-ps4_Intergenic_downstream,2,108827650,108827699,108827650,108827651,50,+,CGGATGTGAAAGGTGTCGCTGGGATTACCAATGACGTGCTAATGGCTGCT,Distal Intergenic,2,108874926,108875258,333,2,Rpl35a-ps4-201,47559,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,100043423,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5592,cg10714261,-0.00000172,0.00000245,-0.700374422,0.484218803,loss,ns,0.00000171,0.00000417,0.410688457,0.681584714,pos,ns,-0.001580995,0.001221798,-1.293990989,0.196631729,neg,ns,0.706346403,0.000114238,0.000042,2.718812013,0.006920703,pos,ns,0.934837533,Pbx3,Pbx3_Exon,2,34288821,34288870,34288869,34288870,50,-,GACCTCGCTGCACCATGGCCGAAATGACTACTAAAAGCATAACAGAGACG,Promoter (<=1kb),2,34172873,34288852,115980,2,Pbx3-210,0,Pbx3-202;Pbx3-201;Pbx3-210;Pbx3-206;Pbx3-207;Pbx3-209;Pbx3-204;Pbx3-205;Pbx3-203,Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3,0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,82,18516,ENSMUSG00000038718,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17039,cg16168311,-0.0000126,0.00000973,-1.293640416,0.1967527,loss,ns,0.00000679,0.0000165,0.41059604,0.681652419,pos,ns,-0.002008542,0.004845129,-0.414548717,0.678759009,neg,ns,0.168284393,0.00013318,0.000166624,0.799289496,0.424734556,pos,ns,0.401967541,Naxe,Naxe_Exon,3,88058183,88058232,88058183,88058184,50,+,CGCTGAACTGGTATTCGTTAAATAGCTCCTGGTCCACGGCCTGGGCCTCC,Promoter (<=1kb),3,88056520,88058495,1976,2,Naxe-201,263,Gpatch4-201;Gpatch4-202;Gpatch4-205;Gpatch4-204;Gpatch4-203;Naxe-201,Gpatch4;Gpatch4;Gpatch4;Gpatch4;Gpatch4;Naxe,15075;15075;15074;15059;15055;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,246703,ENSMUSG00000028070,conserved gene and region,3,88058061,88058220,160,*,160,11,0.6,0.791722897,0.06875,0.000000534,CpGisland,TRUE,NA,NRS
2322,cg23398076,0.000219509,0.0000294,7.478914265,7.76E-13,gain,yes,0.0000205,0.0000499,0.41055854,0.681679892,pos,ns,-0.015952113,0.014608005,-1.092011775,0.275675873,neg,ns,0.559601241,0.000993791,0.000502368,1.978212271,0.048789852,pos,ns,0.613274634,Meis1,Meis1_Exon,11,19016219,19016268,19016267,19016268,50,+,CGGGTACTGATGCGAGTGCAGAGGAGGCCCGTGGTTCAGGTGGTGGACCG,"Exon (Meis1-206/Meis1, exon 2 of 10)",11,18879817,19018985,139169,2,Meis1-206,2717,Meis1-206;Meis1-202;Meis1-209;Meis1-201;Meis1-203;Meis1-208;Meis1-207;Meis1-204;Meis1-205,Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,21,88,17268,ENSMUSG00000020160,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3508,cg07020859,0.0000455,0.0000163,2.786170519,0.005662103,gain,ns,-0.0000114,0.0000278,-0.41054335,0.681691021,neg,ns,-0.005746315,0.008132954,-0.706547044,0.480378711,neg,ns,0.318416247,0.000526329,0.000279692,1.881818215,0.060797428,pos,ns,0.625917745,Gm11892,Gm11892_Intergenic_upstream,4,24218647,24218696,24218647,24218648,50,-,CGTGTAAGCAGGCATTTCTGGAGATGTTAGAAAAGTAATTGTCTGTAAAT,Distal Intergenic,4,24238100,24239301,1202,1,Gm11892-201,-19453,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,16,16,664973,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13697,cg06889609,-0.00000478,0.00000151,-3.164111163,0.001709901,loss,ns,0.00000105,0.00000256,0.410517883,0.681709679,pos,ns,-0.000503919,0.000751401,-0.670638465,0.502950194,neg,ns,0.29847502,-0.0000377,0.0000258,-1.457127126,0.146093474,neg,ns,0.032202722,Rab8a,Rab8a_fiveUTR,8,72161352,72161401,72161400,72161401,50,-,GTGTAATATGGCGAAGACCTACGATTACCTGTTCAAGCTGCTGCTGATCG,Promoter (<=1kb),8,72161359,72176057,14699,1,Rab8a-202,0,Rab8a-201;Rab8a-203;Rab8a-202,Rab8a;Rab8a;Rab8a,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,5,17274,ENSMUSG00000003037,conserved gene but different region,8,72161136,72161662,527,*,527,47,0.669829222,0.805967721,0.089184061,1.73E-33,CpGisland,TRUE,U1,Pr-A
24771,cg04074570,-0.00000175,0.00000123,-1.426882841,0.154620071,loss,ns,0.000000855,0.00000208,0.410488249,0.68173139,pos,ns,0.001259436,0.000610491,2.062989447,0.039946127,pos,ns,1.398525317,-0.0000683,0.000021,-3.251363126,0.001274979,neg,ns,0.967979477,Ankrd52,Ankrd52_Intron,10,128395330,128395379,128395378,128395379,50,-,TCCCCATGTACAGCTATGTATATTCAGGGGTGTTCTCCGTCTGGTACCCG,"Intron (Ankrd52-202/Ankrd52, intron 5 of 5)",10,128389290,128408704,19415,1,Ankrd52-202,6040,Ankrd52-201;Ankrd52-202;Slc39a5-201;Slc39a5-202;Slc39a5-204;Slc39a5-203;Slc39a5-205,Ankrd52;Ankrd52;Slc39a5;Slc39a5;Slc39a5;Slc39a5;Slc39a5,0;0;5850;5087;5138;5087;5831,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,12,237615,ENSMUSG00000014498,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24692,cg00146676,0.0000308,0.00000334,9.230337335,4.35E-18,gain,yes,-0.00000233,0.00000567,-0.410470772,0.681744194,neg,ns,0.005191721,0.001662085,3.123619611,0.001955166,pos,ns,2.708816437,-0.0000449,0.0000572,-0.785503538,0.432758335,neg,ns,0.087474919,Neurog2,Neurog2_Promoter,3,127627495,127627544,127627543,127627544,50,-,GCTGGGGATTAACATCTTAAAGTCTATGAGACTTTCTGACTCAAGGCTCG,Promoter (5-6kb),3,127633135,127635631,2497,1,Neurog2-201,-5640,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,13,14,11924,ENSMUSG00000027967,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
12760,cg09421985,0.0000608,0.000007,8.680376783,2.28E-16,gain,yes,-0.00000488,0.0000119,-0.410348475,0.681833797,neg,ns,0.010491125,0.003486445,3.009118399,0.002835009,pos,ns,2.547445544,-0.000110183,0.000119899,-0.918964711,0.358828503,neg,ns,0.113482306,Phox2b,Phox2b_Exon,5,67098776,67098825,67098776,67098777,50,+,CGGACGTGGCCCCAAAAGTGGTCCTTATCGGGTTATACTGGAAGCCACTG,Promoter (<=1kb),5,67094399,67099301,4903,2,Phox2b-201,476,Phox2b-201;Phox2b-202,Phox2b;Phox2b,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,28,18935,ENSMUSG00000012520,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
8905,cg07769222,0.0000131,0.00000484,2.707063396,0.007164463,gain,ns,0.00000337,0.00000822,0.410282141,0.681882399,pos,ns,0.004158313,0.002409543,1.725768573,0.085385511,pos,ns,1.068615817,-0.0000483,0.0000829,-0.582421788,0.560705971,neg,ns,0.091179733,Helt,Helt_fiveUTR,8,46294665,46294714,46294713,46294714,50,+,TAATAGGCTGTTCCGCCGGGTTCAAGGGAGAGCTCTTGGAGACGGAGGCG,Promoter (<=1kb),8,46292039,46294671,2633,2,Helt-201,0,Helt-201;Helt-202;Helt-203,Helt;Helt;Helt,0;-676;-1330,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,7,22,234219,ENSMUSG00000047171,conserved gene but different region,8,46294678,46294897,220,*,220,21,0.65,0.923630548,0.095454546,6.99E-16,CpGisland,TRUE,U13,Hc-P
3107,cg21949818,-0.0000114,0.0000109,-1.047976697,0.295465708,loss,ns,-0.00000756,0.0000184,-0.410156536,0.681974434,neg,ns,-0.004309066,0.005402315,-0.797633209,0.425693915,neg,ns,0.370902557,-0.00000418,0.000185785,-0.02249193,0.982070019,neg,ns,0.794407806,Nol4,Nol4_Exon,18,22769850,22769899,22769898,22769899,50,-,ATGATAGCCTGGATCTTTTCTTTGGGCTGCTTAGAGATTGGGACCATTCG,"Exon (Nol4-202/Nol4, exon 8 of 11)",18,22693181,22850754,157574,2,Nol4-203,80855,Nol4-203;Nol4-202;Nol4-204;Nol4-201;Nol4-208;Nol4-206,Nol4;Nol4;Nol4;Nol4;Nol4;Nol4,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,16,21,319211,ENSMUSG00000041923,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16644,cg11591813,-0.000025,0.00000443,-5.642775572,3.78E-08,loss,yes,0.00000309,0.00000753,0.410093226,0.682020824,pos,ns,-0.006315073,0.002205146,-2.863789253,0.004471541,neg,ns,2.349542807,0.000224153,0.0000758,2.955811598,0.003357723,pos,ns,0.94385736,Bcas3,Bcas3_Intron,11,85814334,85814383,85814382,85814383,50,-,GGTCACTAGGCTCTAATGCATTTACCATTGACTGCCCCTCTTGTAGTGCG,"Intron (Bcas3-205/Bcas3, intron 26 of 27)",11,85353167,85826058,472892,1,Bcas3-205,461167,Bcas3-205;Bcas3-206;Bcas3-201;Bcas3-202;Bcas3-216;Bcas3-212;Bcas3-203;Bcas3-207;Bcas3-215,Bcas3;Bcas3;Bcas3;Bcas3;Bcas3;Bcas3;Bcas3;Bcas3;Bcas3,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,24,192197,ENSMUSG00000059439,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4394,cg11015524,-0.0000384,0.00000764,-5.021530471,0.000000867,loss,yes,0.00000532,0.000013,0.410063977,0.682042257,pos,ns,-0.011212891,0.00380148,-2.949611721,0.003423928,neg,ns,2.465475439,0.000382332,0.000130733,2.924533006,0.00370409,pos,ns,0.854677592,Mapk14,Mapk14_threeUTR,17,28737042,28737091,28737042,28737043,50,+,CGTTGGAACCCCAGGGGCTGAGCTTTTGAAGAAAATCTCCTCAGAGTCTG,3' UTR,17,28691329,28748406,57078,1,Mapk14-201,45713,Mapk14-201;Mapk14-204;Mapk14-202;Mapk14-205;Mapk14-210;Mapk14-209;Mapk14-203;Mapk14-208;Mapk14-207,Mapk14;Mapk14;Mapk14;Mapk14;Mapk14;Mapk14;Mapk14;Mapk14;Mapk14,0;0;0;0;0;0;0;0;-4528,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,1,26416,ENSMUSG00000053436,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26269,cg23527794,0.000000616,0.00000205,0.300145954,0.764266997,gain,ns,-0.00000143,0.00000349,-0.410038346,0.682061038,neg,ns,0.002048768,0.001022163,2.004345496,0.045902572,pos,ns,1.338162978,-0.0000753,0.0000352,-2.143537997,0.032847785,neg,ns,0.947052134,Cfap61,Cfap61_Intron,2,145971848,145971897,145971896,145971897,50,-,GGCTGGCCGTCTCTTTCTGCACATATGGTAGATGGATTGGTTAATCAGCG,"Intron (Cfap61-204/Cfap61, intron 7 of 15)",2,145934784,146043073,108290,1,Cfap61-204,37064,Cfap61-204;Cfap61-206,Cfap61;Cfap61,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,13,78774,ENSMUSG00000037143,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16181,cg13716164,-0.0000169,0.00000781,-2.161965821,0.031385684,loss,ns,-0.00000544,0.0000133,-0.409988029,0.68209791,neg,ns,-0.013459941,0.003889429,-3.460646909,0.000614458,neg,ns,3.211507451,0.0000855,0.000133757,0.639378624,0.523048831,pos,ns,0.813868202,Bnc2,Bnc2_Intron,4,84560476,84560525,84560476,84560477,50,+,CGTGGACCTTTGTGTAGTATTGTGGGTGTCATGGTTTCACATGTTGGCCA,"Intron (Bnc2-201/Bnc2, intron 1 of 7)",4,84275095,84675034,399940,2,Bnc2-201,114509,Bnc2-201;Bnc2-202;Bnc2-214;Bnc2-215;Bnc2-206;Bnc2-211;Bnc2-217;Bnc2-207;Bnc2-203;Bnc2-209;Bnc2-204;Bnc2-210,Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,91,242509,ENSMUSG00000028487,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9992,cg19423145,-0.000014,0.00000339,-4.126448118,0.0000474,loss,ns,0.00000236,0.00000577,0.40996737,0.682113049,pos,ns,-0.000068,0.001689647,-0.040232737,0.967933477,neg,ns,0.014154489,0.0000554,0.0000581,0.953068833,0.34129773,pos,ns,0.930582679,Eif3h,Eif3h_Intron,15,51798659,51798708,51798707,51798708,50,+,CACAGAACATCTGGTCTGGAGAGCTTGAGGAAACACCATTAAATAGGCCG,"Intron (Eif3h-201/Eif3h, intron 3 of 7)",15,51786558,51865523,78966,2,Eif3h-201,66815,Eif3h-201;Eif3h-204;Eif3h-203,Eif3h;Eif3h;Eif3h,0;0;66746,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,3,68135,ENSMUSG00000022312,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18604,cg13994241,0.000066,0.00000708,9.32034384,2.25E-18,gain,yes,0.00000493,0.000012,0.409944154,0.682130062,pos,ns,0.012252422,0.003524812,3.476050174,0.00058148,pos,ns,3.235465049,-0.000146872,0.000121218,-1.211638979,0.226573358,neg,ns,0.598813465,Hoxb5,Hoxb5_Intergenic_downstream,11,96306964,96307013,96306964,96306965,50,+,CGAGAAGTCAGACAGATACCCCTCACTGGCTCGAGAAAGTCACGTGAGGT,Distal Intergenic,11,96303512,96306120,2609,1,Hoxb5-201,3452,Hoxb5-202;Hoxb5-201,Hoxb5;Hoxb5,0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,34,15413,ENSMUSG00000038700,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
12646,cg00948634,0.0000394,0.0000126,3.135625947,0.001879252,gain,ns,-0.00000874,0.0000213,-0.409827616,0.682215463,neg,ns,0.000489395,0.006249184,0.078313362,0.937629313,pos,ns,0.027968824,0.000000534,0.000214909,0.002483204,0.998020289,pos,ns,0.519733937,Stmn4,Stmn4_threeUTR,14,66361096,66361145,66361096,66361097,50,+,CGGAAAAACAAGGAGCTGAAGGAAGAGGCCTCCAGGTAAAGCCTAGAGGC,3' UTR,14,66344304,66361680,17377,1,Stmn4-201,16792,Stmn4-209;Stmn4-201;Stmn4-202;Stmn4-204;Stmn4-203;Stmn4-206;Stmn4-208,Stmn4;Stmn4;Stmn4;Stmn4;Stmn4;Stmn4;Stmn4,16800;0;0;0;0;16718;16715,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,56471,ENSMUSG00000022044,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12863,cg25136875,0.000000519,0.00000157,0.330536063,0.74121823,gain,ns,0.00000109,0.00000267,0.409770811,0.682257093,pos,ns,-0.001201881,0.000780811,-1.539271888,0.124758012,neg,ns,0.903931553,0.0000395,0.0000269,1.471042412,0.142293971,pos,ns,0.965636431,Lrrc28,Lrrc28_Intergenic_downstream,7,67474890,67474939,67474890,67474891,50,-,CGGAAGGAGACAGCCAGACATCTCCAGGTGGAATGAGCTTCCTGCTGTTC,Distal Intergenic,7,67529711,67535397,5687,2,Lrrc28-203,60507,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,2,67867,ENSMUSG00000030556,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24176,cg16121098,0.0000168,0.00000665,2.524302469,0.012091867,gain,ns,0.00000463,0.0000113,0.40971589,0.682297342,pos,ns,0.014253439,0.003309869,4.306344877,0.0000223,pos,ns,4.651736436,-0.000358363,0.000113826,-3.148336014,0.001801861,neg,ns,0.850328431,Tnrc6a,Tnrc6a_threeUTR,7,123174152,123174201,123174200,123174201,50,-,TCTATGCAAGATGGCTGGTGTGGTGATGATATGCCATTGCCTGGAAATCG,3' UTR,7,123124177,123193987,69811,1,Tnrc6a-203,49975,Tnrc6a-203;Tnrc6a-201;Tnrc6a-210;Tnrc6a-206;Tnrc6a-205;Tnrc6a-202;Tnrc6a-211;Tnrc6a-204;Tnrc6a-207,Tnrc6a;Tnrc6a;Tnrc6a;Tnrc6a;Tnrc6a;Tnrc6a;Tnrc6a;Tnrc6a;Tnrc6a,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,5,24,233833,ENSMUSG00000052707,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27442,cg16158544,-0.0000244,0.0000053,-4.608725087,0.00000593,loss,ns,-0.00000369,0.000009,-0.409610005,0.682374945,neg,ns,-0.0039633,0.00263663,-1.503168687,0.133813565,neg,ns,0.873499858,-0.000000159,0.0000907,-0.001754476,0.99860126,neg,ns,0.930701248,Pbx1,Pbx1_threeUTR,1,168183558,168183607,168183606,168183607,50,-,CTGGCTGCGAGTCCATCACTGTATCCTCCTGTCTGGCTGATAACATGGCG,3' UTR,1,168119364,168432270,312907,2,Pbx1-208,248663,Pbx1-208;Pbx1-205;Pbx1-206;Pbx1-201;Pbx1-202,Pbx1;Pbx1;Pbx1;Pbx1;Pbx1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,84,18514,ENSMUSG00000052534,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13550,cg10871126,0.0000032,0.00000114,2.817282299,0.005154073,gain,ns,-0.000000791,0.00000193,-0.409599968,0.682382301,neg,ns,0.001008094,0.000565787,1.781754351,0.075768132,pos,ns,1.120513422,-0.00000611,0.0000195,-0.314056373,0.753689461,neg,ns,0.975782214,Dync1i2,Dync1i2_Intron,2,71245244,71245293,71245244,71245245,50,+,CGCTCAATTTCAAGTAATGTAGGATTGGCATACGTCATTATCATTTTGAT,"Intron (Dync1i2-207/Dync1i2, intron 6 of 16)",2,71211706,71263298,51593,1,Dync1i2-207,33538,Dync1i2-207;Dync1i2-205;Dync1i2-206;Dync1i2-204;Dync1i2-211;Dync1i2-201;Dync1i2-208;Dync1i2-202;Dync1i2-203;Dync1i2-209,Dync1i2;Dync1i2;Dync1i2;Dync1i2;Dync1i2;Dync1i2;Dync1i2;Dync1i2;Dync1i2;Dync1i2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,6,13427,ENSMUSG00000027012,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25105,cg01456885,-0.00000489,0.00000374,-1.309396507,0.191369719,loss,ns,-0.0000026,0.00000635,-0.409566715,0.682406673,neg,ns,0.001447916,0.001859047,0.778848591,0.436663023,pos,ns,0.359853583,-0.0000184,0.0000639,-0.287440984,0.773966735,neg,ns,0.893392777,Mdm4,Mdm4_Exon,1,133004698,133004747,133004698,133004699,50,+,CGAGAGCGAGAGTCTGAGCAGCATCTGGATAGCAAGTAAAACAAAAGGAA,"Exon (Mdm4-206/Mdm4, exon 6 of 11)",1,132959484,133025338,65855,2,Mdm4-206,20591,Mdm4-206;Mdm4-210;Mdm4-202;Mdm4-214;Mdm4-203;Mdm4-201;Mdm4-212;Mdm4-211;Mdm4-205;Mdm4-209;Mdm4-204;Mdm4-213,Mdm4;Mdm4;Mdm4;Mdm4;Mdm4;Mdm4;Mdm4;Mdm4;Mdm4;Mdm4;Mdm4;Mdm4,0;0;0;0;0;0;0;-373;-3277;-570;20583;25814,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,17248,ENSMUSG00000054387,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17245,cg16647935,0.0000456,0.00000572,7.966921937,3.13E-14,gain,yes,0.00000398,0.00000972,0.409367589,0.682552622,pos,ns,0.007324855,0.002847434,2.572440993,0.010563686,pos,ns,1.976184505,0.0000473,0.0000979,0.483180899,0.629308367,pos,ns,0.090418939,Nog,Nog_Promoter,11,89302537,89302586,89302537,89302538,50,-,CGCACGTTGGCACCGGTTTGTCTGTCTCGCAGGGTCCAAGCCTTTAAATT,Promoter (<=1kb),11,89300638,89302332,1695,2,Nog-201,-254,Nog-201,Nog,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,36,18121,ENSMUSG00000048616,conserved gene but different region,11,89301879,89302565,687,*,687,88,0.736535662,0.94472833,0.128093159,2.20E-77,CpGisland,TRUE,U3,Pr-B
18149,cg25643003,0.0000325,0.00000389,8.376584899,1.91E-15,gain,yes,0.0000027,0.0000066,0.409143683,0.682716749,pos,ns,0.004363973,0.001933952,2.256506085,0.024735247,pos,ns,1.60668375,0.0000145,0.0000665,0.218518517,0.827168918,pos,ns,0.092293196,Hsd17b12,Hsd17b12_Intron,2,94243435,94243484,94243435,94243436,50,+,CGGCAAAGCGGGTTCTTCCAGGTAAGTATATAAGTTACTGTACTGTGTGG,"Intron (Mir670hg-205/Mir670hg-205, intron 2 of 5)",2,94032689,94157964,125276,2,Hsd17b12-201,-85471,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,14,19,56348,ENSMUSG00000027195,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
19026,cg00485323,0.0000372,0.0000052,7.161221616,5.84E-12,gain,yes,0.00000361,0.00000883,0.409104731,0.682745303,pos,ns,0.010175171,0.002588093,3.931531686,0.000104162,pos,ns,3.982290918,-0.0000849,0.000089,-0.953678981,0.340989192,neg,ns,0.123907932,Prdm8,Prdm8_Intron,5,98182714,98182763,98182762,98182763,50,+,CAGAATTAGTGGCCCTGACATTCCACTTGAAATCCATTCGCCATGCTCCG,"Intron (Prdm8-202/Prdm8, intron 2 of 4)",5,98167198,98187454,20257,1,Prdm8-202,15516,Prdm8-202;Prdm8-201,Prdm8;Prdm8,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,10,77630,ENSMUSG00000035456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
18332,cg16699500,0.00000265,0.00000422,0.627568767,0.530748456,gain,ns,0.00000293,0.00000717,0.408941588,0.6828649,pos,ns,0.005295454,0.002100288,2.52129937,0.012193423,pos,ns,1.913874375,-0.000190216,0.0000722,-2.63352363,0.008874206,neg,ns,0.939916748,Tbca,Tbca_Intron,13,94817174,94817223,94817222,94817223,50,+,GGAACGGCCCCATAATGTAACTGATTAATGAAGGATTGCTGAGGCATACG,"Intron (Tbca-201/Tbca, intron 1 of 3)",13,94788910,94842922,54013,1,Tbca-201,28264,Tbca-201;Tbca-203;Tbca-204,Tbca;Tbca;Tbca,0;0;-511,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,9,21371,ENSMUSG00000042043,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10970,cg00114602,-0.00000214,0.000000866,-2.46951458,0.01406813,loss,ns,0.000000601,0.00000147,0.408860392,0.682924427,pos,ns,0.001006713,0.000430831,2.336676301,0.020092739,pos,ns,1.696960867,-0.000022,0.0000148,-1.483166365,0.139046137,neg,ns,0.976660383,Tcf7l2,Tcf7l2_threeUTR,19,55931453,55931502,55931453,55931454,50,+,CGCTACATACAAGGTGAAGGCAGCTGCCTCAGCCCACCCTCTTCAGATGG,3' UTR,19,55741820,55933229,191410,1,Tcf7l2-213,189633,Tcf7l2-213;Tcf7l2-201;Tcf7l2-211;Tcf7l2-212;Tcf7l2-222;Tcf7l2-215;Tcf7l2-202;Tcf7l2-209;Tcf7l2-210;Tcf7l2-203,Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,7,88,21416,ENSMUSG00000024985,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15487,cg15533252,-0.00000252,0.00000414,-0.60874831,0.543137088,loss,ns,0.00000288,0.00000704,0.408846341,0.682934728,pos,ns,0.00204445,0.002062808,0.991100747,0.322409342,pos,ns,0.491592383,-0.0000711,0.0000709,-1.002326226,0.316967792,neg,ns,0.833758504,Zbtb7a,Zbtb7a_Exon,10,81144113,81144162,81144113,81144114,50,-,CGCACCGCTCGGTGCTGGCCGCCTGCAGCCAGTACTTCAAGAAGCTGTTC,"Exon (Zbtb7a-205/Zbtb7a, exon 2 of 2)",10,81135220,81144496,9277,1,Zbtb7a-205,8893,Zbtb7a-205;Zbtb7a-201;Zbtb7a-203;Zbtb7a-206;Zbtb7a-204;Zbtb7a-202,Zbtb7a;Zbtb7a;Zbtb7a;Zbtb7a;Zbtb7a;Zbtb7a,0;0;0;7547;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,Exon,2,2,16969,ENSMUSG00000035011,conserved gene and region,10,81143937,81144467,531,*,531,52,0.649717514,0.92969697,0.097928437,3.26E-39,CpGisland,TRUE,U10,Tr-S
26063,cg05312831,-0.0000165,0.0000133,-1.241054818,0.215523818,loss,ns,0.00000922,0.0000226,0.408703803,0.68303923,pos,ns,-0.008411787,0.006611163,-1.272361179,0.204198352,neg,ns,0.689947767,-0.00000024,0.000227357,-0.001055944,0.999158158,neg,ns,0.754263572,Gm2505,Gm2505_Exon,3,143588221,143588270,143588221,143588222,50,-,CGAAGTGAATGCTGCAGTTACCACAAGCATCATATTTATCAAAAGGTTTA,"Exon (Gm33651-201/Gm33651-201, exon 3 of 4)",3,143872995,143873819,825,1,Gm2505-201,-284774,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,37,100039938,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6156,cg26755354,-0.0000111,0.00000363,-3.058738428,0.002416638,loss,ns,0.00000252,0.00000617,0.408658448,0.683072484,pos,ns,-0.000249386,0.001808067,-0.137929793,0.890385451,neg,ns,0.050421945,-0.000221128,0.0000622,-3.556304463,0.000434839,neg,ns,0.90786274,Ankmy2,Ankmy2_Exon,12,36182389,36182438,36182389,36182390,50,-,CGAGAGAGACTGGATTATTACACTAAGCCCCAGGGACTGGATAAAGAGCC,"Exon (Ankmy2-201/Ankmy2, exon 5 of 10)",12,36157114,36197291,40178,1,Ankmy2-201,25275,Ankmy2-201;Ankmy2-202;Ankmy2-203,Ankmy2;Ankmy2;Ankmy2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,217473,ENSMUSG00000036188,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21024,cg14335863,-0.0000208,0.00000761,-2.736354914,0.006570642,loss,ns,0.00000528,0.0000129,0.408614019,0.68310506,pos,ns,-0.001068371,0.003786064,-0.282185048,0.777989922,neg,ns,0.109026029,-0.0000252,0.000130202,-0.193263136,0.846879457,neg,ns,0.594128028,Vrk1,Vrk1_Intergenic_downstream,12,106129092,106129141,106129092,106129093,50,-,CGTAAATTGGACTTATAGCTCAGCTGCTGGCATAAATAAGTCCCTTTGAT,Distal Intergenic,12,106030717,106075409,44693,1,Vrk1-204,98424,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,29,37,22367,ENSMUSG00000021115,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11760,cg05232001,0.0000566,0.000011,5.155969968,0.000000451,gain,yes,-0.00000762,0.0000186,-0.408592858,0.683120575,neg,ns,-0.0000272,0.005463355,-0.004983712,0.996026795,neg,ns,0.001728978,0.000115405,0.000187884,0.614233282,0.539511695,pos,ns,0.731855785,Cdh23,Cdh23_Intron,10,60527815,60527864,60527863,60527864,50,-,TCTCAGTCCTTAATTCCAGTCAATTCCAGTCGAAAGGCTGATAGGCATCG,"Intron (Cdh23-201/Cdh23, intron 7 of 66)",10,60302748,60657333,354586,2,Cdh23-201,129469,Cdh23-201;Cdh23-203;Cdh23-202;Cdh23-204;Cdh23-205;Cdh23-209;Cdh23-210,Cdh23;Cdh23;Cdh23;Cdh23;Cdh23;Cdh23;Cdh23,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,14,22295,ENSMUSG00000012819,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3463,cg14360838,-0.0000501,0.00000729,-6.870686812,3.51E-11,loss,yes,-0.00000506,0.0000124,-0.408535218,0.683162838,neg,ns,-0.008779025,0.00363001,-2.418457419,0.0161624,neg,ns,1.791494142,0.000184435,0.000124836,1.477424906,0.14057697,pos,ns,0.754699296,Bcl11a,Bcl11a_Intron,11,24162260,24162309,24162260,24162261,50,+,CGCAGGATGTTGTATAATTTGGTTCACGTTGTTAGCCTCTCAAAACAATG,"Intron (Bcl11a-201/Bcl11a, intron 3 of 4)",11,24078056,24173194,95139,1,Bcl11a-201,84204,Bcl11a-201;Bcl11a-203;Bcl11a-202;Bcl11a-204;Bcl11a-206,Bcl11a;Bcl11a;Bcl11a;Bcl11a;Bcl11a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,98,14025,ENSMUSG00000000861,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12731,cg18744777,0.0000105,0.0000108,0.970150941,0.33272758,gain,ns,0.00000749,0.0000183,0.408479266,0.683203864,pos,ns,0.003055407,0.00537442,0.56850918,0.570100867,pos,ns,0.244048299,0.000113112,0.000184826,0.611991159,0.540992195,pos,ns,0.202744252,Limch1,Limch1_Exon,5,66997170,66997219,66997170,66997171,50,+,CGCACAGCAGGGCCCGCCAGGAGCAGCTGCAGCTGATAAATAACCAGCTG,"Exon (Limch1-202/Limch1, exon 10 of 26)",5,66745845,67056214,310370,1,Limch1-202,251325,Limch1-202;Limch1-219;Limch1-204;Limch1-203;Limch1-215;Limch1-201;Limch1-220;Limch1-212;Limch1-207;Limch1-209;Limch1-205;Limch1-213;Limch1-211,Limch1;Limch1;Limch1;Limch1;Limch1;Limch1;Limch1;Limch1;Limch1;Limch1;Limch1;Limch1;Limch1,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,77569,ENSMUSG00000037736,conserved gene and region,5,66996983,66997185,203,*,203,17,0.640394089,0.823824302,0.083743842,5.80E-12,CpGisland,TRUE,NA,NRS
4642,cg18664554,0.0000651,0.0000142,4.581088004,0.00000671,gain,ns,0.00000986,0.0000242,0.408353658,0.683295968,pos,ns,0.000816263,0.007076378,0.115350376,0.908242091,pos,ns,0.041798375,0.000226019,0.000243356,0.928757515,0.353737364,pos,ns,0.578232568,Mecom,Mecom_Intron,3,30018426,30018475,30018426,30018427,50,+,CGCTTCTAATTACTTTTGATTATTTTCATTTGCTGGGGTCAGTCTGGCTT,"Intron (Mecomos-201/Mecomos-201, intron 2 of 3)",3,29951299,30509733,558435,2,Mecom-212,491258,Mecom-212;Mecom-202;Mecom-203;Mecom-210;Mecom-213;Mecom-207;Mecom-208;Mecom-211,Mecom;Mecom;Mecom;Mecom;Mecom;Mecom;Mecom;Mecom,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,80,14013,ENSMUSG00000027684,conserved gene and region,3,30018371,30018460,90,*,90,8,0.5,1.428571429,0.088888889,0.00000534,CpGisland,TRUE,U15,NS
13790,cg27139932,-0.00000089,0.00000147,-0.604905995,0.545683978,loss,ns,0.00000102,0.0000025,0.408128207,0.683461296,pos,ns,0.002453941,0.000732671,3.349310948,0.000910148,pos,ns,3.040887798,-0.0000801,0.0000252,-3.178620693,0.001629168,neg,ns,0.955226068,Ak3l2-ps,Ak3l2-ps_Intron,2,72708564,72708613,72708612,72708613,50,+,TTCACTTCAGTCACATTATTGATTCTGCCGTGTGAAATATAGAAGCGCCG,"Intron (8430437L04Rik-201/8430437L04Rik-201, intron 3 of 6)",2,72633936,72634607,672,1,Ak3l2-ps-201,74628,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,635960,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16003,cg06545110,-0.00000366,0.0000099,-0.369854994,0.711743077,loss,ns,-0.00000686,0.0000168,-0.408103965,0.683479074,neg,ns,0.020037937,0.004927033,4.066937949,0.0000605,pos,ns,4.218483608,-0.000695356,0.00016944,-4.103843734,0.000052,neg,ns,0.224264177,Dysf,Dysf_Intron,6,84135176,84135225,84135176,84135177,50,+,CGAGCTTGGAGCTGATGGTATCACAGCCAGACGGTTTCATTAAATGCACA,"Intron (Dysf-204/Dysf, intron 32 of 54)",6,84008590,84211060,202471,1,Dysf-204,126586,Dysf-204;Dysf-205;Dysf-213;Dysf-215;Dysf-210;Dysf-211;Dysf-212;Dysf-214;Dysf-216;Dysf-202;Dysf-203;Dysf-201,Dysf;Dysf;Dysf;Dysf;Dysf;Dysf;Dysf;Dysf;Dysf;Dysf;Dysf;Dysf,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,15,26903,ENSMUSG00000033788,conserved gene and region,6,84135100,84135232,133,*,133,10,0.52631579,1.089271089,0.07518797,0.000000942,CpGisland,TRUE,NA,NRS
16590,cg27393201,0.0000159,0.00000436,3.645297563,0.000313095,gain,ns,-0.00000303,0.00000741,-0.408103461,0.683479444,neg,ns,0.004484504,0.002171621,2.065048826,0.039749531,pos,ns,1.400667994,-0.000108022,0.0000747,-1.446433855,0.149065867,neg,ns,0.08918361,Six3,Six3_Intron,17,85618558,85618607,85618558,85618559,50,-,CGGGGTCACGAGCTGCTTTCAAAAAGTTGAACACAATATTCGGAAACCCA,"Intron (Six3-202/Six3, intron 1 of 2)",17,85613608,85625222,11615,1,Six3-202,4950,Six3-202;Six3-203;Six3-201,Six3;Six3;Six3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,24,20473,ENSMUSG00000038805,mapped to different genes,17,85618467,85618636,170,*,170,15,0.652941177,0.831160365,0.088235294,6.13E-11,CpGisland,TRUE,U13,Hc-P
5936,cg05468331,-0.0000139,0.00000782,-1.775929183,0.076725465,loss,ns,-0.00000542,0.0000133,-0.408026314,0.683536021,neg,ns,-0.007946295,0.003892755,-2.041303522,0.042067159,neg,ns,1.376056817,0.0000143,0.000133872,0.106632828,0.915149246,pos,ns,0.529897713,Slit3,Slit3_Intron,11,35417420,35417469,35417420,35417421,50,-,CGGAAGACAGTTAAAAGATTAGATAGTAAATTTACTTAACAGAGACTAAT,"Intron (Slit3-201/Slit3, intron 4 of 35)",11,35121224,35708507,587284,1,Slit3-201,296196,Slit3-201;Slit3-203,Slit3;Slit3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,21,20564,ENSMUSG00000056427,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20937,cg20682837,-0.0000108,0.00000478,-2.267569212,0.024043592,loss,ns,-0.00000332,0.00000813,-0.407990745,0.683562107,neg,ns,0.012588359,0.002380888,5.287254346,0.000000235,pos,ns,6.629231818,-0.000165798,0.0000819,-2.024920617,0.043732346,neg,ns,0.914586889,Relch,Relch_threeUTR,1,105740974,105741023,105741022,105741023,50,+,TACCAAACCATTTTTTATTGCATGTTGACTGGTTTACAGCTGACTCTTCG,Promoter (<=1kb),1,105740980,105750989,10010,1,Relch-206,0,Relch-205;Relch-201;Relch-202;Relch-210;Relch-212;Relch-203;Relch-209;Relch-206,Relch;Relch;Relch;Relch;Relch;Relch;Relch;Relch,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,6,227446,ENSMUSG00000026319,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19073,cg24692246,-0.00000293,0.0000148,-0.197878351,0.843269935,loss,ns,0.0000103,0.0000251,0.407979323,0.683570484,pos,ns,-0.011332248,0.007365559,-1.538545467,0.124935359,neg,ns,0.903314631,0.000151584,0.000253301,0.598432834,0.549988149,pos,ns,0.682467191,Neurod2,Neurod2_Intergenic_downstream,11,98320471,98320520,98320519,98320520,50,+,ATAATGAACAGATGCCATGGAATTTAAGCTGGAGCCTCGGCTCCTCCCCG,Distal Intergenic,11,98325415,98329648,4234,2,Neurod2-201,9128,Neurod2-201,Neurod2,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,22,18013,ENSMUSG00000038255,conserved gene and region,11,98320508,98320625,118,*,118,9,0.737288136,0.561310782,0.076271186,0.00000366,CpGisland,TRUE,U13,Hc-P
12916,cg14888659,-0.00000169,0.000000867,-1.942855179,0.052938808,loss,ns,-0.000000601,0.00000147,-0.40794632,0.683594688,neg,ns,-0.00024135,0.000431713,-0.559051597,0.576530139,neg,ns,0.239177984,-0.00000666,0.0000148,-0.448299369,0.654250319,neg,ns,0.030469662,Arid5b,Arid5b_Exon,10,68278065,68278114,68278065,68278066,50,-,CGTACATCTTACAAAGAAAAAGTCGCCAAGGGACAAAATTCTTGGTTTGC,Promoter (<=1kb),10,68092520,68278740,186221,2,Arid5b-204,626,Arid5b-204;Arid5b-201;Arid5b-202,Arid5b;Arid5b;Arid5b,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,33,71371,ENSMUSG00000019947,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
26434,cg22081744,0.0000762,0.0000163,4.678426263,0.00000432,gain,ns,-0.0000113,0.0000277,-0.407925828,0.683609717,neg,ns,0.023512794,0.00810311,2.901699934,0.003977216,pos,ns,2.400420796,-0.000760933,0.000278665,-2.730634714,0.006682987,neg,ns,0.426900826,Foxa2,Foxa2_Intron,2,147968780,147968829,147968828,147968829,50,-,CCATGGGAATACAAAAGCCGGAGCTTTTAGCAGAGTTAATCATTAATGCG,"Intron (9030622O22Rik-201/9030622O22Rik-201, intron 2 of 6)",2,148044240,148045464,1225,2,Foxa2-203,76684,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,25,15376,ENSMUSG00000037025,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12107,cg21758687,-0.00000103,0.000000583,-1.759324736,0.079508802,loss,ns,-0.000000404,0.00000099,-0.407892291,0.683634314,neg,ns,0.0000522,0.000290055,0.179995062,0.857274046,pos,ns,0.066880324,-0.0000219,0.00000997,-2.194098838,0.02897019,neg,ns,0.01547669,Pias1,Pias1_Exon,9,62980808,62980857,62980808,62980809,50,-,CGCGGCCGAATATTAGAAGTGAATTCGAGCTGCGCTTTACCTTTAGTTCC,Promoter (<=1kb),9,62878368,62980879,102512,2,Pias1-201,22,Pias1-201;Pias1-202;Pias1-205,Pias1;Pias1;Pias1,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,12,56469,ENSMUSG00000032405,conserved gene but different region,9,62980517,62981139,623,*,623,66,0.706260032,0.90840403,0.105939005,4.79E-52,CpGisland,TRUE,NA,NRS
5564,cg20875194,-0.000038,0.0000152,-2.497800322,0.013014666,loss,ns,0.0000106,0.0000259,0.407881193,0.683642454,pos,ns,0.036294403,0.007577858,4.789533188,0.00000259,pos,ns,5.58591065,-0.001352552,0.000260602,-5.190109348,0.000000381,neg,yes,0.62159388,Pbx3,Pbx3_Intron,2,34275647,34275696,34275695,34275696,50,-,CAAACAACTGACAGAAACAATGTTACAGCTTTAAGAGCAGTTTGTCAACG,"Intron (Pbx3-202/Pbx3, intron 2 of 7)",2,34171457,34372038,200582,2,Pbx3-202,96342,Pbx3-202;Pbx3-201;Pbx3-210;Pbx3-206;Pbx3-207;Pbx3-209;Pbx3-204;Pbx3-205;Pbx3-203,Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,82,18516,ENSMUSG00000038718,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19343,cg18970197,-0.0000154,0.00000478,-3.212707566,0.001453174,loss,ns,0.00000331,0.00000813,0.407690023,0.683782668,pos,ns,-0.002503766,0.00238122,-1.051463666,0.293864623,neg,ns,0.531852693,0.0000648,0.0000819,0.791793698,0.429086417,pos,ns,0.893952987,Foxp1,Foxp1_Intron,6,99063994,99064043,99064042,99064043,50,+,GATGTATGAAAATTATTCACAACCAAAAACAGACAGTCTGGAAATAGCCG,"Intron (Foxp1-206/Foxp1, intron 4 of 17)",6,98925338,99266515,341178,2,Foxp1-206,202472,Foxp1-206;Foxp1-204;Foxp1-220;Foxp1-201;Foxp1-205;Foxp1-207;Foxp1-208;Foxp1-226;Foxp1-228;Foxp1-221;Foxp1-222;Foxp1-218,Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,87,108655,ENSMUSG00000030067,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25950,cg09023627,-0.000000492,0.00000792,-0.062107976,0.950516869,loss,ns,-0.00000549,0.0000135,-0.407650781,0.683811452,neg,ns,0.003919885,0.003943034,0.994129269,0.320935269,pos,ns,0.493582554,-0.000158023,0.000135601,-1.165358372,0.244769856,neg,ns,0.83797486,Spen,Spen_Exon,4,141522162,141522211,141522210,141522211,50,-,GAAACCTCTCTACTACGAGATGCTATGGAAACTGTATCATCCAATCCCCG,"Exon (Spen-201/Spen, exon 2 of 15)",4,141467890,141538449,70560,2,Spen-201,16238,Spen-201;Spen-202;Spen-205,Spen;Spen;Spen,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,17,19,56381,ENSMUSG00000040761,conserved gene and region,4,141522177,141522281,105,*,105,9,0.552380952,1.125,0.085714286,0.00000139,CpGisland,TRUE,U10,Tr-S
9654,cg18789460,-0.00000441,0.00000244,-1.809321495,0.071369604,loss,ns,-0.00000169,0.00000414,-0.407538709,0.683893658,neg,ns,-0.001119444,0.00121407,-0.922058528,0.357215092,neg,ns,0.447070201,0.0000369,0.0000418,0.883340194,0.377737003,pos,ns,0.958871213,Htatip2,Htatip2_Intergenic_upstream,7,49700069,49700118,49700069,49700070,50,-,CGTACACCGTGCAATTTGGGGCAGACGCACCATGTAACAACACATTTACA,Distal Intergenic,7,49759115,49762759,3645,1,Htatip2-203,-59046,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,7,53415,ENSMUSG00000039745,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25202,cg27384394,-0.00002,0.00000651,-3.069064126,0.002337053,loss,ns,-0.0000045,0.0000111,-0.407505152,0.683918274,neg,ns,0.009833184,0.003237987,3.036820141,0.002593899,pos,ns,2.586046968,-0.00028792,0.000111354,-2.585624587,0.010176453,neg,ns,0.829964059,Arid1a,Arid1a_Exon,4,133689086,133689135,133689134,133689135,50,-,TTCTTGGAATCAGCAGCTGCAAAGATGTCTGGGGGAGGGTCTTCTCCCCG,"Exon (Arid1a-202/Arid1a, exon 12 of 20)",4,133679008,133753611,74604,2,Arid1a-202,64476,Arid1a-202;Arid1a-205;Arid1a-201;Arid1a-203,Arid1a;Arid1a;Arid1a;Arid1a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,13,31,93760,ENSMUSG00000007880,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11721,cg23237751,-0.0000136,0.00000909,-1.497874396,0.135183414,loss,ns,0.00000629,0.0000154,0.407279058,0.68408413,pos,ns,0.003889478,0.004523664,0.859806956,0.390559885,pos,ns,0.408312366,-0.0000739,0.000155568,-0.475198953,0.634979808,neg,ns,0.768199131,Atp11c,Atp11c_Exon,X,60236388,60236437,60236388,60236389,50,-,CGAAGTTTTTACTATACTTTTTATGCAGAAGAGGAAATTAAGTGATGAAC,"Exon (Atp11c-204/Atp11c, exon 27 of 27)",20,60223290,60592698,369409,2,Atp11c-205,356261,Atp11c-205;Atp11c-201;Atp11c-202;Atp11c-203;Atp11c-204,Atp11c;Atp11c;Atp11c;Atp11c;Atp11c,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,320940,ENSMUSG00000062949,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23347,cg12317464,-0.0000236,0.00000798,-2.962193887,0.003290795,loss,ns,0.00000552,0.0000136,0.407273528,0.684088187,pos,ns,-0.007191134,0.00397223,-1.810351864,0.071209366,neg,ns,1.147462879,0.0000596,0.000136605,0.436199993,0.66299525,pos,ns,0.575181525,Pgs1,Pgs1_Exon,11,118014569,118014618,118014569,118014570,50,+,CGCAGGCCTCTGGCTGTACCTGGCAGGGAGCAGCCTGCCCTGTCTCACGC,"Exon (Pgs1-203/Pgs1, exon 8 of 10)",11,117986292,118024011,37720,1,Pgs1-203,28277,Pgs1-203;Pgs1-201;Pgs1-202;Pgs1-204,Pgs1;Pgs1;Pgs1;Pgs1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,74451,ENSMUSG00000017715,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11107,cg15854328,0.000105016,0.0000147,7.124737649,7.34E-12,gain,yes,-0.0000102,0.000025,-0.407069951,0.684237539,neg,ns,0.024442522,0.007336046,3.331838749,0.000967121,pos,ns,3.0145192,-0.000661483,0.000252286,-2.621956981,0.009174175,neg,ns,0.328914205,Lingo1,Lingo1_Intron,9,56622923,56622972,56622923,56622924,50,+,CGCTCCAGTGACCCACCAGAAAAGCAAACATCCTGACAGGCGATCAATAA,"Intron (Lingo1-201/Lingo1, intron 3 of 3)",9,56618475,56685253,66779,2,Lingo1-201,62281,Lingo1-201;Lingo1-206;Lingo1-203;Lingo1-202,Lingo1;Lingo1;Lingo1;Lingo1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,25,235402,ENSMUSG00000049556,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21456,cg20406483,0.00000172,0.00000518,0.331912508,0.740179618,gain,ns,-0.00000358,0.0000088,-0.40698972,0.684296403,neg,ns,0.001313435,0.002579094,0.509262228,0.610930732,pos,ns,0.214008028,-0.000076,0.0000887,-0.856998362,0.392107799,neg,ns,0.919167843,Evi5,Evi5_Exon,5,107819611,107819660,107819659,107819660,50,-,AGCAACAATCCAACTATAAAAGCACTTCCTTGACAGTAACCAACCTCACG,"Exon (Evi5-201/Evi5, exon 5 of 18)",5,107744795,107875107,130313,2,Evi5-201,55447,Evi5-201;Evi5-205;Evi5-202;Evi5-203;Evi5-207;Evi5-210;Evi5-211;Evi5-213;Evi5-204,Evi5;Evi5;Evi5;Evi5;Evi5;Evi5;Evi5;Evi5;Evi5,0;0;0;-2802;0;0;0;0;49239,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,14020,ENSMUSG00000011831,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1779,cg02211646,-0.00000829,0.00000863,-0.960441564,0.337581535,loss,ns,-0.00000596,0.0000147,-0.406923708,0.684344837,neg,ns,-0.00256551,0.004293736,-0.597500707,0.550609326,neg,ns,0.259156437,0.0000725,0.000147661,0.490674418,0.624003883,pos,ns,0.120403048,Foxp2,Foxp2_fiveUTR,6,15185558,15185607,15185606,15185607,50,-,GATTTGTTTTAATTACCAGCACAAAATGCCATCAGTCTGGGACGTGATCG,Promoter (<=1kb),6,15185563,15394815,209253,1,Foxp2-210,0,Foxp2-207;Foxp2-213;Foxp2-208;Foxp2-211;Foxp2-217;Foxp2-203;Foxp2-216;Foxp2-205;Foxp2-204;Foxp2-201;Foxp2-210,Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,65,114142,ENSMUSG00000029563,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23720,cg11498355,0.00000648,0.000019,0.341004108,0.733331488,gain,ns,0.0000131,0.0000323,0.406756929,0.684467208,pos,ns,0.043857462,0.009456522,4.637800605,0.0000052,pos,ns,5.284066357,-0.002391628,0.000325209,-7.354125404,1.73E-12,neg,yes,0.509025914,Slc38a10,Slc38a10_Exon,11,120186510,120186559,120186558,120186559,50,+,AGAATGCTTTCATTGTAAATTCAGGTTACAAAGAAACTATACCTGGGCCG,"Exon (2810410L24Rik-202/2810410L24Rik-202, exon 2 of 2)",11,120123844,120151346,27503,2,Slc38a10-202,-35164,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,72055,ENSMUSG00000061306,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
5725,cg23080165,-0.0000284,0.00000496,-5.718346892,2.53E-08,loss,yes,0.00000343,0.00000842,0.406688213,0.684517631,pos,ns,-0.00528413,0.002468039,-2.141023109,0.033051796,neg,ns,1.480804934,0.000123295,0.0000849,1.452649581,0.147332496,pos,ns,0.902123056,Mapkap1,Mapkap1_Intron,2,34622369,34622418,34622417,34622418,50,-,CCAGTTTTAAGCCACAGCATATTAACCAGCTAATGGCAGAGCAAAGGGCG,"Intron (Mapkap1-204/Mapkap1, intron 10 of 10)",2,34406862,34623475,216614,1,Mapkap1-204,215507,Mapkap1-204;Mapkap1-202;Mapkap1-201;Mapkap1-209;Mapkap1-203;Mapkap1-205,Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,59,227743,ENSMUSG00000038696,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20881,cg07149402,0.0000239,0.00000323,7.414597631,1.17E-12,gain,yes,-0.00000223,0.00000548,-0.406646915,0.684547934,neg,ns,0.00420616,0.001606313,2.618518771,0.009265078,pos,ns,2.033150912,-0.0000561,0.0000552,-1.016062742,0.310391849,neg,ns,0.054827539,Pax6,Pax6_Exon,2,105682279,105682328,105682279,105682280,50,-,CGATGCAATTTCCCGGAGCGGAGCACTGTCACAAAGTGACAAGGCTGCCA,"Exon (Pax6-221/Pax6, exon 1 of 2)",2,105668900,105697364,28465,1,Pax6-206,13379,Pax6-206;Pax6-207;Pax6-210;Pax6-214;Pax6-208;Pax6-202;Pax6-205;Pax6-225;Pax6-204;Pax6-201;Pax6-203;Pax6-224;Pax6-219;Pax6-221;Pax6-213;Pax6-211;Pax6-222;Pax6-212;Pax6-215;Pax6-223;Pax6-209;Pax6-216,Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,31,78,18508,ENSMUSG00000027168,conserved gene and region,2,105682176,105682419,244,*,244,18,0.524590164,1.074626866,0.073770492,1.12E-11,CpGisland,TRUE,NA,NRS
3207,cg08824506,0.000068,0.0000108,6.287758197,1.09E-09,gain,yes,0.00000747,0.0000184,0.406642692,0.684551033,pos,ns,0.006282064,0.005381639,1.167314203,0.243980592,pos,ns,0.612644719,0.0000274,0.000185074,0.148031948,0.882413794,pos,ns,0.06884602,Fezf1,Fezf1_fiveUTR,6,23248352,23248401,23248352,23248353,50,-,CGTTAACTTCCAAGAGGAGAAGGTAAACTAGATAATTGCTCAATTCGCTT,Promoter (<=1kb),6,23245044,23248362,3319,2,Fezf1-201,0,Fezf1-201,Fezf1,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,7,73191,ENSMUSG00000029697,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3293,cg11971601,0.00000021,0.000000953,0.220719836,0.825455883,gain,ns,-0.000000658,0.00000162,-0.406589172,0.684590307,neg,ns,0.000281843,0.000474189,0.594368989,0.552698866,pos,ns,0.257511427,-0.000056,0.0000163,-3.432218074,0.000679962,neg,ns,0.971334854,Kmt2e,Kmt2e_threeUTR,5,23498938,23498987,23498938,23498939,50,-,CGGGCTTTCAAGTAAGACCTAGGTTCGAATCCCGGCTCCAACACTCACCA,3' UTR,5,23434441,23504235,69795,1,Kmt2e-201,64497,Kmt2e-201;Kmt2e-202;Kmt2e-204;Kmt2e-206;Kmt2e-203;Kmt2e-208;Kmt2e-205;Srpk2-201,Kmt2e;Kmt2e;Kmt2e;Kmt2e;Kmt2e;Kmt2e;Kmt2e;Srpk2,0;0;13437;0;0;5980;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,8,69188,ENSMUSG00000029004,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19527,cg25821659,0.0000416,0.0000106,3.92527795,0.000106773,gain,ns,0.00000732,0.000018,0.406421139,0.684713616,pos,ns,0.006954127,0.005279157,1.317279812,0.188717653,pos,ns,0.724187472,-0.0000604,0.00018155,-0.332638833,0.739631754,neg,ns,0.529759419,Gm12687,Gm12687_Intergenic_downstream,4,99574214,99574263,99574214,99574215,50,-,CGGGGCCCTTACGATACTGATTAGTGTGAGTGACAAAGTGGTGCTGCAAG,Distal Intergenic,4,99615817,99616522,706,2,Gm12687-201,42308,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,7,100417847,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7550,cg01158430,-0.00000916,0.00000665,-1.377505445,0.16934972,loss,ns,-0.00000459,0.0000113,-0.406355102,0.684762079,neg,ns,-0.008225021,0.003308947,-2.485691008,0.013456762,neg,ns,1.871059418,0.0000463,0.000113794,0.407202686,0.684140158,pos,ns,0.867432429,Sobp,Sobp_Exon,10,43127822,43127871,43127870,43127871,50,-,TTCTCGCTGCAGAAGCTTTTCACCTCACTTCCCATACTCAGGGAATAGCG,"Exon (Sobp-201/Sobp, exon 4 of 7)",10,43002500,43174530,172031,2,Sobp-201,46659,Sobp-201,Sobp,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,19,109205,ENSMUSG00000038248,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13944,cg06939982,-0.000000484,0.00000131,-0.370321811,0.711395617,loss,ns,0.000000901,0.00000222,0.40616435,0.684902074,pos,ns,0.000105331,0.000650095,0.162024432,0.871392168,pos,ns,0.059786348,-0.0000193,0.0000224,-0.863807298,0.388361608,neg,ns,0.969627168,Smad4,Smad4_Exon,18,73649735,73649784,73649783,73649784,50,-,TCAATGGCTTCTGTCCTGTGGACATTGGAGAGTTGACCCAAACAAAAGCG,"Exon (Smad4-201/Smad4, exon 9 of 12)",18,73639009,73703780,64772,2,Smad4-201,53996,Smad4-201;Smad4-202;Smad4-206;Smad4-205,Smad4;Smad4;Smad4;Smad4,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,17128,ENSMUSG00000024515,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17152,cg18207715,0.0000571,0.0000128,4.458651019,0.0000115,gain,ns,0.00000884,0.0000218,0.406159552,0.684905595,pos,ns,0.041046523,0.006375876,6.437785377,4.61E-10,pos,ns,9.336598411,-0.000865733,0.000219266,-3.948326281,0.0000974,neg,ns,0.494834571,Rps6-ps2,Rps6-ps2_Intergenic_downstream,8,88846494,88846543,88846494,88846495,50,+,CGGATAAAAGAGGAAATTGAACTGGGAATAGGCTGAAGTGCTGTAAAAAC,Distal Intergenic,8,88806391,88807137,747,1,Rps6-ps2-201,40103,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,14,675985,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5532,cg03236920,-0.0000477,0.00000888,-5.369844746,0.000000155,loss,yes,0.00000613,0.0000151,0.406107805,0.684943575,pos,ns,-0.005656836,0.004421442,-1.279409861,0.201709521,neg,ns,0.695273602,-0.0000292,0.000152053,-0.192362669,0.847584084,neg,ns,0.85068809,Hdac9,Hdac9_Exon,12,34215416,34215465,34215416,34215417,50,+,CGAACCTCATTTGGGGCTCCACTGCCAGGGAAAAAGTTCCCTTCATCATA,"Exon (Hdac9-205/Hdac9, exon 19 of 25)",12,34047580,34528328,480749,2,Hdac9-205,312863,Hdac9-205;Hdac9-204;Hdac9-206;Hdac9-210;Hdac9-207,Hdac9;Hdac9;Hdac9;Hdac9;Hdac9,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,31,79221,ENSMUSG00000004698,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9762,cg23815006,-0.000110075,0.0000174,-6.311640654,9.54E-10,loss,yes,-0.000012,0.0000296,-0.406055427,0.684982019,neg,ns,-0.023934201,0.008680066,-2.757375622,0.006172303,neg,ns,2.209552793,0.000460157,0.000298507,1.541529526,0.124208097,pos,ns,0.675563596,Trps1,Trps1_Intron,15,50698659,50698708,50698659,50698660,50,-,CGAACAATGTTATGACAATGTTTATAACTTTTACAGTCAAGCCTGGCTGC,"Intron (Trps1-202/Trps1, intron 4 of 5)",15,50654752,50889691,234940,2,Trps1-202,190983,Trps1-202;Trps1-206;Trps1-204;Trps1-205;Trps1-207;Trps1-201,Trps1;Trps1;Trps1;Trps1;Trps1;Trps1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,36,83925,ENSMUSG00000038679,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2082,cg05341330,0.0000338,0.00000587,5.766208709,1.96E-08,gain,yes,-0.00000405,0.00000997,-0.406048272,0.684987271,neg,ns,0.019296865,0.002921762,6.604529832,1.73E-10,pos,yes,9.761160995,-0.000401115,0.000100479,-3.992024759,0.0000818,neg,ns,0.110631677,A930004D18Rik,A930004D18Rik_Intron,2,18029081,18029130,18029129,18029130,50,-,GAATTCCTGCTCCGTATCACTTCAATTTTAATTAATCTTTTAAAACACCG,"Intron (A930004D18Rik-201/A930004D18Rik, intron 1 of 1)",2,18025193,18037737,12545,2,A930004D18Rik-201,8607,A930004D18Rik-201;A930004D18Rik-202;A930004D18Rik-203,A930004D18Rik;A930004D18Rik;A930004D18Rik,0;-321;-210,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,10,77940,ENSMUSG00000054057,mapped to different genes,2,18028841,18029141,301,*,301,25,0.631229236,0.845125786,0.083056478,2.77E-17,CpGisland,TRUE,NA,NRS
10261,cg10651829,0.00000845,0.00000217,3.890861568,0.00012229,gain,ns,0.0000015,0.00000369,0.40591952,0.685081774,pos,ns,0.002926008,0.001081263,2.706101751,0.007184755,pos,ns,2.143588064,-0.0000496,0.0000372,-1.335220127,0.182783941,neg,ns,0.07363077,Evx1,Evx1_fiveUTR,6,52313580,52313629,52313580,52313581,50,-,CGATTGCAGCAGGAGGATGACAGCTTAGAAAGAAGAGGGCAATGGGGCTT,Promoter (<=1kb),6,52313498,52318378,4881,1,Evx1-201,82,Evx1-201;Evx1-202,Evx1;Evx1,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,7,19,14028,ENSMUSG00000005503,mapped to different genes,6,52313448,52313581,134,*,134,12,0.574626866,1.093877551,0.089552239,6.76E-09,CpGisland,TRUE,U13,Hc-P
9855,cg05436467,0.0000124,0.00000831,1.49148058,0.136852241,gain,ns,-0.00000573,0.0000141,-0.405837983,0.685141624,neg,ns,0.00423774,0.004138031,1.024095638,0.306588575,pos,ns,0.513444034,-0.000088,0.000142307,-0.618282256,0.536843285,neg,ns,0.808862016,Gm5040,Gm5040_Intergenic_upstream,10,51153883,51153932,51153931,51153932,50,+,AAAGAAGGCAATTCTGCAACTTCAAATGAGCCTAATTGGCTGAGCGCTCG,Distal Intergenic,10,51238829,51239628,800,1,Gm5040-201,-84897,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,11,268300,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14622,cg05222837,-0.00000596,0.00000382,-1.560746533,0.119603829,loss,ns,-0.00000263,0.00000648,-0.405830118,0.685147397,neg,ns,0.001699367,0.001899419,0.894677213,0.371653772,pos,ns,0.429861455,-0.000146752,0.0000653,-2.246626444,0.025367486,neg,ns,0.913518113,Ttn,Ttn_Intron,2,76920616,76920665,76920664,76920665,50,+,GAATAAACGCAACACCATGCTCTGTTTAAAAGATTCTGACACGAAAATCG,"Intron (Ttn-201/Ttn, intron 44 of 190)",2,76703980,76982455,278476,2,Ttn-201,61790,Ttn-201;Ttn-203;Ttn-205;Ttn-204;Ttn-211;Ttn-202,Ttn;Ttn;Ttn;Ttn;Ttn;Ttn,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,12,22138,ENSMUSG00000051747,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22099,cg24387663,0.000000656,0.00000372,0.176362432,0.860124374,gain,ns,0.00000256,0.00000632,0.405723063,0.685225982,pos,ns,-0.000556806,0.001851391,-0.300750255,0.763806549,neg,ns,0.117016622,0.0000518,0.0000637,0.814048585,0.416241973,pos,ns,0.927952983,Ttc28,Ttc28_Exon,5,110892916,110892965,110892916,110892917,50,+,CGTCAGAGTAATCAGGCCTGTCATGATGGAGATTTCCACACAGCTATTGT,"Exon (Ttc28-201/Ttc28, exon 2 of 24)",5,110879803,111289779,409977,1,Ttc28-201,13113,Ttc28-201;Ttc28-206;Ttc28-205,Ttc28;Ttc28;Ttc28,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,3,209683,ENSMUSG00000033209,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24527,cg18664171,0.0000561,0.00000754,7.439479151,1.00E-12,gain,yes,-0.0000052,0.0000128,-0.405716006,0.685231162,neg,ns,-0.000709578,0.00375402,-0.189018277,0.85020218,neg,ns,0.070477786,0.0000786,0.0001291,0.609132916,0.542882479,pos,ns,0.80080218,Camk2d,Camk2d_Exon,3,126805864,126805913,126805912,126805913,50,-,ACAAAGCCAACGTGGTAACCAGCCCCAAAGAAAATATTCCTACCCCAGCG,"Exon (Camk2d-206/Camk2d, exon 14 of 20)",3,126596951,126844913,247963,1,Camk2d-206,208913,Camk2d-206;Camk2d-203;Camk2d-202;Camk2d-216;Camk2d-226;Camk2d-210;Camk2d-219;Camk2d-213;Camk2d-209;Camk2d-204;Camk2d-228;Camk2d-221;Camk2d-207;Camk2d-205;Camk2d-222;Camk2d-214;Camk2d-223;Camk2d-224;Camk2d-217;Camk2d-218;Camk2d-201;Camk2d-227;Camk2d-220;Camk2d-225,Camk2d;Camk2d;Camk2d;Camk2d;Camk2d;Camk2d;Camk2d;Camk2d;Camk2d;Camk2d;Camk2d;Camk2d;Camk2d;Camk2d;Camk2d;Camk2d;Camk2d;Camk2d;Camk2d;Camk2d;Camk2d;Camk2d;Camk2d;Camk2d,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;-1249,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,4,108058,ENSMUSG00000053819,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1360,cg22782928,0.0000209,0.00000441,4.741679226,0.00000324,gain,ns,-0.00000304,0.00000749,-0.405553624,0.685350366,neg,ns,0.004926807,0.00219515,2.244405811,0.025511512,pos,ns,1.593263803,-0.000164979,0.0000755,-2.18540786,0.029607097,neg,ns,0.096211532,Sox1,Sox1_Exon,8,12430376,12430425,12430376,12430377,50,-,CGGTGACAGAATGGGACAAGCTGGGAAAGGCTTAGACCACACAAGTCCAA,"Exon (Sox1ot-201/Sox1ot-201, exon 7 of 9)",8,12395295,12400126,4832,1,Sox1-201,35130,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,15,20664,ENSMUSG00000096014,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
23154,cg10931167,-0.00000244,0.00000965,-0.252703078,0.800665149,loss,ns,0.00000665,0.0000164,0.405516521,0.685377605,pos,ns,0.00245647,0.004801239,0.511632465,0.609272505,pos,ns,0.21518842,-0.00015304,0.000165114,-0.926876073,0.354711922,neg,ns,0.454911365,Cpsf6,Cpsf6_Exon,10,117362091,117362140,117362091,117362092,50,+,CGGCCCCGTCCTCTACCACCTTGTGGAAATGCTGCACGGGAACTGCCTCC,"Exon (Cpsf6-201/Cpsf6, exon 5 of 10)",10,117344673,117376970,32298,2,Cpsf6-201,14830,Cpsf6-201;Cpsf6-207;Cpsf6-206;Cpsf6-204;Cpsf6-208;Cpsf6-205;Cpsf6-203,Cpsf6;Cpsf6;Cpsf6;Cpsf6;Cpsf6;Cpsf6;Cpsf6,0;0;0;-1147;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,432508,ENSMUSG00000055531,conserved gene but different region,10,117362091,117362150,60,*,60,7,0.683333333,1.029411765,0.116666667,0.00000466,CpGisland,TRUE,U10,Tr-S
25833,cg19234231,0.00000947,0.00000477,1.983381157,0.048206925,gain,ns,0.00000329,0.00000811,0.405475523,0.685407703,pos,ns,0.002276209,0.002376031,0.957987903,0.338815381,pos,ns,0.470036882,0.0000125,0.0000817,0.152394408,0.878975005,pos,ns,0.532470422,Uncx,Uncx_Intergenic_downstream,5,139593774,139593823,139593822,139593823,50,+,TATTTCCAGCTTGTACAGCTGTAAATAGAGACTGACAGTTTATTTTCACG,Distal Intergenic,5,139543898,139545268,1371,1,Uncx-202,49876,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,59,88,22255,ENSMUSG00000029546,conserved gene and region,5,139593820,139594133,314,*,314,21,0.563694268,0.845167906,0.066878981,1.10E-12,CpGisland,TRUE,U13,Hc-P
1181,cg10272666,0.0000728,0.0000118,6.183236153,1.98E-09,gain,yes,0.0000081,0.00002,0.405400074,0.685463095,pos,ns,0.022381999,0.005857019,3.821397813,0.000160346,pos,ns,3.794943097,-0.000756166,0.000201422,-3.754130273,0.000207669,neg,ns,0.037692,Gm14512,Gm14512_Intergenic_downstream,X,11999178,11999227,11999178,11999179,50,+,CGCCCGCGGTCACAGGGGCAATTACACTCCTCGCTGCAGACGGTTACCAG,Distal Intergenic,20,11984468,11984697,230,1,Gm14512-201,14710,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,22,22,,NA,mapped to different genes,X,11998943,11999768,826,*,826,64,0.644067797,0.75275891,0.07748184,2.38E-41,CpGisland,TRUE,NA,NRS
9005,cg23152982,-0.00000328,0.00000146,-2.2391169,0.025857407,loss,ns,-0.00000101,0.00000249,-0.405380069,0.685477782,neg,ns,-0.000318357,0.000728957,-0.436729777,0.662611366,neg,ns,0.178741119,0.0000136,0.0000251,0.542934172,0.587565271,pos,ns,0.051598644,Trim8,Trim8_Intron,19,46503773,46503822,46503773,46503774,50,-,CGGAAAAAGAATCCTGTGGGTTTAAGGTTGAGCCGCCTTGAAATCTGGTT,"Intron (Trim8-201/Trim8, intron 1 of 5)",19,46501702,46516848,15147,1,Trim8-201,2071,Trim8-201,Trim8,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,21,93679,ENSMUSG00000025034,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
24509,cg16636527,-0.00000226,0.00000167,-1.355784055,0.176154712,loss,ns,0.00000115,0.00000283,0.40524667,0.685575723,pos,ns,0.000639928,0.000829786,0.771196362,0.441177959,pos,ns,0.355386193,-0.0000019,0.0000285,-0.066476752,0.947041118,neg,ns,0.060332911,Gabpb1,Gabpb1_fiveUTR,2,126675320,126675369,126675320,126675321,50,-,CGGTGGTAACAGGGCCCTACACAGACCCGCACTGACCTGGAAAAGCTTCG,Promoter (<=1kb),2,126652326,126675339,23014,2,Gabpb1-208,0,Gabpb1-206;Gabpb1-205;Gabpb1-204;Gabpb1-201;Gabpb1-203;Gabpb1-202;Gabpb1-208;Gabpb1-207,Gabpb1;Gabpb1;Gabpb1;Gabpb1;Gabpb1;Gabpb1;Gabpb1;Gabpb1,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,7,12,14391,ENSMUSG00000027361,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
12641,cg09487905,-0.0000327,0.0000071,-4.608759627,0.00000593,loss,ns,0.00000489,0.0000121,0.4050093,0.685750012,pos,ns,-0.003284525,0.003534125,-0.929374109,0.353418348,neg,ns,0.451710907,-0.000232999,0.000121538,-1.917086742,0.056145889,neg,ns,0.853980125,Scn1a,Scn1a_Exon,2,66289062,66289111,66289062,66289063,50,-,CGCCCATGATGCTGAAAATTAGCCAGAATATAAGACAAACCAGAAGCACA,"Exon (Scn1a-208/Scn1a, exon 7 of 13)",2,66270778,66317946,47169,2,Scn1a-208,28835,Scn1a-208;Scn1a-203;Scn1a-204;Scn1a-201;Scn1a-202;Scn1a-207,Scn1a;Scn1a;Scn1a;Scn1a;Scn1a;Scn1a,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,4,20265,ENSMUSG00000064329,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8283,cg06294013,0.00000006,0.00000111,0.053904016,0.957046358,gain,ns,-0.000000766,0.00000189,-0.404972556,0.685776993,neg,ns,0.000065,0.000554263,0.117251743,0.906736493,pos,ns,0.042518905,-0.0000201,0.0000191,-1.052566671,0.293359384,neg,ns,0.968768032,Ube4a,Ube4a_threeUTR,9,44942811,44942860,44942811,44942812,50,+,CGCCAGGCAACCTGCAGCCGATGCAGATTTTGGTTGATTTTTACCATCTG,3' UTR,9,44923127,44965578,42452,2,Ube4a-201,22718,Ube4a-201;Ube4a-202;Ube4a-205;Ube4a-206;Ube4a-204,Ube4a;Ube4a;Ube4a;Ube4a;Ube4a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,4,140630,ENSMUSG00000059890,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18317,cg04016956,0.0000349,0.00000342,10.20194614,2.92E-21,gain,yes,0.00000235,0.00000581,0.404696789,0.685979499,pos,ns,0.003865593,0.001700939,2.272622717,0.023733299,pos,ns,1.624641885,0.00000809,0.0000585,0.138322997,0.890074958,pos,ns,0.107473951,Gm48316,Gm48316_Intergenic_upstream,13,94710148,94710197,94710196,94710197,50,+,AAGTCATCCAGTTTGCGCTAATCACCACAATTAGTCCTGAATTATCACCG,Distal Intergenic,13,94752270,94752593,324,1,Gm48316-201,-42073,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,36,42,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
11216,cg18194663,-0.00000601,0.00000251,-2.39994156,0.016987323,loss,ns,-0.00000172,0.00000426,-0.40465154,0.686012729,neg,ns,0.000916385,0.001247342,0.734670138,0.463095777,pos,ns,0.334329179,-0.0000979,0.0000429,-2.282675744,0.023126395,neg,ns,0.03217527,Sin3a,Sin3a_Intron,9,57075743,57075792,57075791,57075792,50,+,TCTAGTGTAAACATTCCACAAAAGGACTGCTAAGGTTCAGCCTCCTCGCG,"Intron (Sin3a-209/Sin3a, intron 1 of 2)",9,57072040,57089496,17457,1,Sin3a-209,3703,Sin3a-209;Sin3a-204;Sin3a-208;Sin3a-206;Sin3a-202,Sin3a;Sin3a;Sin3a;Sin3a;Sin3a,0;0;0;0;-836,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,4,20466,ENSMUSG00000042557,conserved gene and region,9,57075789,57075916,128,*,128,12,0.671875,0.842105263,0.09375,3.94E-09,CpGisland,TRUE,U1,Pr-A
5951,cg24919169,0.0000175,0.0000131,1.329222874,0.184751855,gain,ns,0.00000903,0.0000223,0.404509498,0.686117046,pos,ns,0.012311096,0.006541976,1.881861953,0.060791467,pos,ns,1.216157379,-0.000576,0.000224978,-2.560251531,0.010933381,neg,ns,0.54184889,Slit3,Slit3_Exon,11,35544731,35544780,35544779,35544780,50,+,AACTGGACAACAACCACATCAGCTGCATTGAAGATGGAGCCTTCCGAGCG,"Exon (Slit3-201/Slit3, exon 6 of 36)",11,35121224,35708507,587284,1,Slit3-201,423507,Slit3-201;Slit3-202,Slit3;Slit3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,21,20564,ENSMUSG00000056427,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
7141,cg01168718,0.0000142,0.00000483,2.947804572,0.003443448,gain,ns,-0.00000332,0.0000082,-0.404451273,0.686159809,neg,ns,-0.002375981,0.002403775,-0.988437243,0.323709412,neg,ns,0.489844673,0.000058,0.0000827,0.701055009,0.48379458,pos,ns,0.896841481,Gm12140,Gm12140_Intergenic_downstream,11,41389625,41389674,41389625,41389626,50,-,CGTGTCTAAATAATGCTGAGAAAATTGAGTTAGAAAGTGTACACACAACA,Distal Intergenic,11,41378078,41378621,544,1,Gm12140-201,11596,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,100039285,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24532,cg10538288,-0.00000294,0.00000203,-1.443502203,0.149888822,loss,ns,-0.0000014,0.00000346,-0.404379026,0.686212872,neg,ns,0.001731673,0.001012498,1.710297292,0.088211425,pos,ns,1.05447516,-0.0000502,0.0000348,-1.442755383,0.15009902,neg,ns,0.947916814,AU040320,AU040320_Exon,4,126842572,126842621,126842620,126842621,50,-,TCCTCCTGGGGGTGCTGGATTCCGACATCATTGTGCAAAAGATTCAGCCG,"Exon (AU040320-203/AU040320, exon 16 of 24)",4,126753555,126870070,116516,1,AU040320-203,89017,AU040320-203;AU040320-201;AU040320-202;AU040320-211,AU040320;AU040320;AU040320;AU040320,0;0;0;7293,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,100317,ENSMUSG00000028830,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20443,cg25476308,0.0000248,0.00000301,8.218081412,5.70E-15,gain,yes,-0.00000207,0.00000512,-0.404069282,0.686440385,neg,ns,0.002310273,0.001500377,1.539794481,0.12463055,pos,ns,0.90437549,-0.0000918,0.0000516,-1.779770853,0.076093002,neg,ns,0.05274742,Hoxc4,Hoxc4_threeUTR,15,103035819,103035868,103035819,103035820,50,+,CGCATGAAATGGAAGAAGGACCACCGACTCCCCAACACCAAAGTCAGGTC,3' UTR,15,103018934,103036405,17472,1,Hoxc4-202,16885,Hoxc4-202;Hoxc4-201,Hoxc4;Hoxc4,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,17,91,15423,ENSMUSG00000075394,conserved gene but different region,15,103035816,103035967,152,*,152,15,0.677631579,0.904761905,0.098684211,1.14E-11,CpGisland,TRUE,U13,Hc-P
3378,cg12965311,-0.0000153,0.00000431,-3.544392168,0.000454159,loss,ns,0.00000296,0.00000733,0.403821186,0.686622637,pos,ns,0.000365266,0.002147529,0.170086547,0.86505302,pos,ns,0.062957274,-0.000111335,0.0000739,-1.50751365,0.132697428,neg,ns,0.911228837,Gm11890,Gm11890_Intergenic_upstream,4,23934019,23934068,23934067,23934068,50,+,ATAAAAATTCCATTTATTTAAATTCCATTAAAAAGCACATTTGGCTGCCG,Distal Intergenic,4,23659928,23660344,417,2,Gm11890-201,-273675,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,15,32,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
467,cg22338588,-0.000000683,0.00000514,-0.132684485,0.894528996,loss,ns,-0.00000353,0.00000874,-0.40377911,0.686653548,neg,ns,-0.00218483,0.002560192,-0.85338542,0.394104508,neg,ns,0.404388597,0.0000481,0.000088,0.546251816,0.585285764,pos,ns,0.815571048,Zfp787,Zfp787_Exon,7,6132821,6132870,6132869,6132870,50,-,GGATGCGCTGGTGCTGCATGAGGTTGGAGCTCCAGCTGAAGCGCTTGCCG,"Exon (Zfp787-201/Zfp787, exon 3 of 3)",7,6131491,6155971,24481,2,Zfp787-201,23101,Zfp787-201;Zfp787-202,Zfp787;Zfp787,0;22725,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,67109,ENSMUSG00000046792,conserved gene and region,7,6132658,6133015,358,*,358,30,0.636871508,0.840967818,0.083798883,9.42E-21,CpGisland,TRUE,U10,Tr-S
6815,cg07323940,-0.000113858,0.0000158,-7.2077398,4.36E-12,loss,yes,0.0000108,0.0000268,0.403740589,0.686681848,pos,ns,-0.025558711,0.007862144,-3.250857739,0.001277171,neg,ns,2.893750824,0.000530811,0.000270378,1.963215094,0.050514931,pos,ns,0.708693406,Dgkb,Dgkb_Intron,12,38594209,38594258,38594209,38594210,50,+,CGTACAGCATGTTCTAATGGCACTCTGGCCTTTAGCCAACAAGGCACTGA,"Intron (Dgkb-203/Dgkb, intron 22 of 24)",12,37880337,38632119,751783,1,Dgkb-203,713872,Dgkb-203;Dgkb-201,Dgkb;Dgkb,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,4,217480,ENSMUSG00000036095,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11059,cg18822250,-0.0000105,0.0000138,-0.762237799,0.446497645,loss,ns,-0.00000946,0.0000234,-0.403584971,0.686796179,neg,ns,0.001932135,0.006867797,0.281332568,0.778643025,pos,ns,0.108661602,-0.0000411,0.000236183,-0.174033083,0.861953056,neg,ns,0.662905078,Ints6l,Ints6l_Exon,X,56480932,56480981,56480980,56480981,50,+,ACCAAAGAACCTTTTCGTTGGGATCAAAGGTTATTTGCCCTGGTGTTGCG,"Exon (Ints6l-204/Ints6l, exon 5 of 16)",20,56454857,56507840,52984,1,Ints6l-204,26075,Ints6l-204;Ints6l-201;Ints6l-202;Ints6l-207;Ints6l-203;Ints6l-206,Ints6l;Ints6l;Ints6l;Ints6l;Ints6l;Ints6l,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,236790,ENSMUSG00000035967,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13922,cg22423904,0.0000226,0.00000367,6.163149027,2.22E-09,gain,yes,0.00000252,0.00000624,0.403573145,0.686804868,pos,ns,0.000926696,0.001826696,0.507306843,0.612300237,pos,ns,0.213035572,-0.00000546,0.0000628,-0.086890425,0.930814707,neg,ns,0.883413766,Chd2,Chd2_threeUTR,7,73454714,73454763,73454762,73454763,50,-,AACTCAGGTAGGAGGGGCTTGTGGCTTCATCTGCTAGAGCATCCCAGCCG,3' UTR,7,73426638,73541746,115109,2,Chd2-203,86983,Chd2-203;Chd2-212;Chd2-206;Chd2-202,Chd2;Chd2;Chd2;Chd2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,16,244059,ENSMUSG00000078671,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18103,cg14577476,-0.00000562,0.00000169,-3.318979429,0.001011153,loss,ns,0.00000116,0.00000288,0.403491713,0.686864698,pos,ns,-0.000540986,0.000843065,-0.641689321,0.521549103,neg,ns,0.282704797,0.0000151,0.000029,0.520785272,0.60288814,pos,ns,0.055120899,Mbtd1,Mbtd1_fiveUTR,11,93886170,93886219,93886170,93886171,50,-,CGCTGGGGAGGGAGGGCTATGCTAATGTTGTTGATATCCTGGGGCCACCC,Promoter (<=1kb),11,93886207,93908941,22735,1,Mbtd1-207,0,Mbtd1-205;Mbtd1-203;Mbtd1-210;Mbtd1-207;Mbtd1-211;Mbtd1-202;Mbtd1-206;Mbtd1-201;Utp18-201;Utp18-202,Mbtd1;Mbtd1;Mbtd1;Mbtd1;Mbtd1;Mbtd1;Mbtd1;Mbtd1;Utp18;Utp18,0;0;0;0;0;0;0;0;-404;-404,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,7,103537,ENSMUSG00000059474,conserved gene but different region,11,93884847,93886171,1325,*,1325,152,0.682264151,0.986872731,0.114716981,7.65E-125,CpGisland,TRUE,U1,Pr-A
21708,cg27034003,-0.00000248,0.000000712,-3.48813935,0.000556765,loss,ns,0.000000488,0.00000121,0.403417868,0.686918955,pos,ns,0.000472595,0.000354146,1.334465247,0.183030782,pos,ns,0.737475866,-0.0000274,0.0000122,-2.24845829,0.025249208,neg,ns,0.02264189,Prpf38b,Prpf38b_Exon,3,108910403,108910452,108910403,108910404,50,-,CGAAACAAGAACTGAGACAAGAGTGCAGTGAGGAGGCGCCAGGTGAGCTC,"Exon (Prpf38b-207/Prpf38b, exon 1 of 2)",3,108902805,108911696,8892,2,Prpf38b-204,1244,Prpf38b-204;Prpf38b-201;Prpf38b-208;Prpf38b-202;Prpf38b-203;Prpf38b-206;Prpf38b-205;Prpf38b-207,Prpf38b;Prpf38b;Prpf38b;Prpf38b;Prpf38b;Prpf38b;Prpf38b;Prpf38b,0;0;0;-4818;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,13,66921,ENSMUSG00000027881,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
4304,cg24727786,0.0000444,0.00000973,4.562431283,0.00000729,gain,ns,-0.00000667,0.0000165,-0.403330709,0.686982997,neg,ns,0.004907272,0.00484167,1.013549567,0.311588143,pos,ns,0.506419077,-0.000224109,0.000166505,-1.345965276,0.17929719,neg,ns,0.08052523,Tnik,Tnik_fiveUTR,3,28263275,28263324,28263323,28263324,50,-,GGAGGAGTTGATGTGTCTCATTATAACAGCCAATGCAGCCGCCATCCACG,Promoter (<=1kb),3,28263276,28360786,97511,1,Tnik-208,0,Tnik-207;Tnik-201;Tnik-208;Tnik-209;Tnik-212;Tnik-203;Tnik-205;Tnik-218;Tnik-202;Tnik-206;Tnik-211;Tnik-214;Tnik-215,Tnik;Tnik;Tnik;Tnik;Tnik;Tnik;Tnik;Tnik;Tnik;Tnik;Tnik;Tnik;Tnik,0;0;0;0;0;0;0;-258;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,15,665113,ENSMUSG00000027692,conserved gene and region,3,28263314,28263711,398,*,398,42,0.655778895,0.982254084,0.105527638,3.03E-33,CpGisland,TRUE,NA,NRS
10638,cg09629925,0.00000368,0.00000871,0.422577234,0.672896694,gain,ns,-0.00000597,0.0000148,-0.403281418,0.687019215,neg,ns,-0.002791332,0.004334857,-0.643927098,0.520098824,neg,ns,0.283914128,0.0000608,0.000149075,0.407994802,0.683559132,pos,ns,0.651210821,Gm7577,Gm7577_Intergenic_downstream,15,54763872,54763921,54763872,54763873,50,-,CGTCATAATGACCTCAGCCAGCCCCTCCTGTCCAGTGGGGAAAGTGGAAT,Distal Intergenic,15,54764532,54765513,982,2,Gm7577-201,1641,Gm7577-201,Gm7577,1592,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,2,665302,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26608,cg26976812,-0.000000305,0.000000564,-0.541979056,0.588222282,loss,ns,-0.000000386,0.000000958,-0.40324606,0.687045197,neg,ns,0.000350578,0.000280529,1.249700623,0.212351592,pos,ns,0.672944479,-0.0000183,0.00000965,-1.901152428,0.058209219,neg,ns,0.981577936,Pex14,Pex14_Exon,4,148984590,148984639,148984590,148984591,50,+,CGACTAATTAGTCTAGATCGTTTCTGAAGACGGGAATAATTTGCTTTATT,"Exon (Gm17029-202/Gm17029-202, exon 3 of 3)",4,148960535,149099876,139342,2,Pex14-201,115237,Pex14-201;Pex14-202;Pex14-205;Pex14-203,Pex14;Pex14;Pex14;Pex14,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,48,56273,ENSMUSG00000028975,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14445,cg04921727,-0.000000204,0.000000278,-0.734697268,0.463079274,loss,ns,-0.00000019,0.000000472,-0.403184119,0.687090713,neg,ns,-0.000410949,0.000138242,-2.97267115,0.003183569,neg,ns,2.497085668,0.0000109,0.00000475,2.289529865,0.022720414,pos,ns,0.992193136,Cabin1,Cabin1_Exon,10,75713450,75713499,75713498,75713499,50,+,TACCGTCCGGCGTTGCCTGCTGGTGGGGTTTTTTACATTTGACGTAATCG,"Exon (Cabin1-201/Cabin1, exon 26 of 37)",10,75646112,75764316,118205,2,Cabin1-201,50817,Cabin1-201;Cabin1-212;Cabin1-211;Cabin1-203,Cabin1;Cabin1;Cabin1;Cabin1,0;0;11735;20272,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,104248,ENSMUSG00000020196,conserved gene and region,10,75713320,75713509,190,*,190,14,0.578947368,0.898345154,0.073684211,3.52E-09,CpGisland,TRUE,U10,Tr-S
24676,cg26816693,-0.0000026,0.00000247,-1.054749508,0.292361249,loss,ns,-0.00000169,0.0000042,-0.403133713,0.687127752,neg,ns,-0.002196442,0.001229147,-1.786964128,0.074920252,neg,ns,1.125400771,0.000047,0.0000423,1.112032433,0.266985851,pos,ns,0.911622687,Phkg2,Phkg2_Exon,7,127577985,127578034,127577985,127577986,50,-,CGATTCCTACGAGTCTTCTAGCTTCATGTTCCTGGTGTTTGACCTGTGAG,"Exon (Phkg2-203/Phkg2, exon 3 of 3)",7,127573340,127578621,5282,1,Phkg2-203,4645,Ccdc189-201;Phkg2-203;Phkg2-206;Phkg2-210;Phkg2-208;Phkg2-201;Phkg2-202;Phkg2-209;Phkg2-205;Phkg2-211;Phkg2-204;Phkg2-207,Ccdc189;Phkg2;Phkg2;Phkg2;Phkg2;Phkg2;Phkg2;Phkg2;Phkg2;Phkg2;Phkg2;Phkg2,10561;0;0;0;0;0;0;0;0;0;-1246;-4062,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,68961,ENSMUSG00000030815,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25800,cg10260267,0.0000842,0.00000799,10.53597763,2.18E-22,gain,yes,0.00000547,0.0000136,0.403132375,0.687128735,pos,ns,0.016239257,0.003978782,4.081464889,0.000057,pos,ns,4.244204923,-0.000226379,0.00013683,-1.654455369,0.099047119,neg,ns,0.224347064,Uncx,Uncx_Intergenic_downstream,5,139549504,139549553,139549552,139549553,50,+,TTTATTTGCAAATAAATTGAAAATAATCTGAAGGACAGCTTTCCTCCTCG,Distal Intergenic,5,139543898,139545268,1371,1,Uncx-202,5606,Uncx-201;Uncx-202,Uncx;Uncx,0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,59,88,22255,ENSMUSG00000029546,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
187,cg08582529,-0.0000166,0.00000545,-3.036921118,0.002593055,loss,ns,-0.00000373,0.00000926,-0.403089698,0.687160097,neg,ns,-0.004526722,0.002713711,-1.668092947,0.096306994,neg,ns,1.016342171,-0.0000158,0.0000933,-0.169596383,0.865438185,neg,ns,0.827007095,Frmd4a,Frmd4a_Exon,2,4604198,4604247,4604246,4604247,50,-,TCGTGGCGCACAGCAGGGTCACCAGGATGCCCCAGATGTGCAAGGCCACG,"Exon (Frmd4a-219/Frmd4a, exon 22 of 25)",2,4017744,4614041,596298,1,Frmd4a-219,586454,Frmd4a-219;Frmd4a-202;Frmd4a-201;Frmd4a-216,Frmd4a;Frmd4a;Frmd4a;Frmd4a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,209630,ENSMUSG00000026657,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20025,cg09506921,-0.0000025,0.00000239,-1.04615414,0.29630489,loss,ns,-0.00000164,0.00000407,-0.402967202,0.687250116,neg,ns,-0.0000734,0.001190932,-0.061615256,0.950908933,neg,ns,0.021861073,-0.00000911,0.000041,-0.222511757,0.824062051,neg,ns,0.93517996,Pgap2,Pgap2_threeUTR,7,102237186,102237235,102237186,102237187,50,+,CGCTGGCTGTCTACTTTCGGCACAACATGTATTGTGAGGCTGGAGGTGAG,3' UTR,7,102210362,102238567,28206,1,Pgap2-204,26824,Pgap2-204;Pgap2-207;Pgap2-216;Pgap2-224;Pgap2-225;Pgap2-211;Pgap2-208;Pgap2-206;Pgap2-201;Pgap2-209;Pgap2-217;Pgap2-218;Pgap2-202;Pgap2-223;Pgap2-212;Pgap2-215;Pgap2-213;Pgap2-203;Pgap2-210;Rhog-202;Rhog-201;Rhog-203,Pgap2;Pgap2;Pgap2;Pgap2;Pgap2;Pgap2;Pgap2;Pgap2;Pgap2;Pgap2;Pgap2;Pgap2;Pgap2;Pgap2;Pgap2;Pgap2;Pgap2;Pgap2;Pgap2;Rhog;Rhog;Rhog,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;12853;12888;18819,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,4,233575,ENSMUSG00000030990,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10360,cg00678823,0.00000123,0.00000176,0.696957856,0.486351476,gain,ns,0.0000012,0.00000299,0.402783783,0.687384914,pos,ns,0.00267237,0.000875397,3.052752551,0.002463908,pos,ns,2.608375439,-0.0000882,0.0000301,-2.930770577,0.003632516,neg,ns,0.9538092,Snx2,Snx2_Exon,18,53210388,53210437,53210436,53210437,50,-,ACAAGGCTGCCGACGCTGTCAACAAAATGACAATCAAGATGAATGAATCG,"Exon (Snx2-201/Snx2, exon 9 of 15)",18,53176316,53220865,44550,1,Snx2-201,34072,Snx2-201;Snx2-203,Snx2;Snx2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,67804,ENSMUSG00000034484,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8088,cg05197191,-0.00000812,0.00000398,-2.041807556,0.042016795,loss,ns,-0.00000272,0.00000675,-0.402738615,0.687418111,neg,ns,-0.00264228,0.001978537,-1.335471967,0.182701646,neg,ns,0.738257539,0.000102498,0.000068,1.506399823,0.132982856,pos,ns,0.462648437,Jarid2,Jarid2_fiveUTR,13,44731436,44731485,44731484,44731485,50,+,CTTTTCTTTTCCAAGATGTAACTACGGATCAGACACTAAGGACCTTCACG,5' UTR,13,44729474,44731574,2101,1,Jarid2-214,1962,Jarid2-214;Jarid2-212;Jarid2-204;Jarid2-210;Jarid2-201;Jarid2-209;Jarid2-203;Jarid2-208;Jarid2-213;Jarid2-215;Jarid2-216;Jarid2-206;Jarid2-205;Jarid2-202,Jarid2;Jarid2;Jarid2;Jarid2;Jarid2;Jarid2;Jarid2;Jarid2;Jarid2;Jarid2;Jarid2;Jarid2;Jarid2;Jarid2,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,8,21,16468,ENSMUSG00000038518,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
7260,cg10723970,0.0000025,0.00000523,0.479244047,0.632102915,gain,ns,-0.00000358,0.00000888,-0.40272774,0.687426104,neg,ns,-0.005520694,0.002600985,-2.12253948,0.034584923,neg,ns,1.461113193,0.00013243,0.0000894,1.480532388,0.13974682,pos,ns,0.710040818,Thoc2,Thoc2_Exon,X,41813209,41813258,41813257,41813258,50,-,TATGGAGCAAGGAATGGCTACCCTGAGTCTTCAAGAAGGCTACACCCACG,Promoter (<=1kb),20,41794991,41814246,19256,2,Thoc2-203,988,Thoc2-203;Thoc2-201;Thoc2-212;Thoc2-208;Thoc2-206;Thoc2-202;Thoc2-211,Thoc2;Thoc2;Thoc2;Thoc2;Thoc2;Thoc2;Thoc2,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,7,331401,ENSMUSG00000037475,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1261,cg11799368,-0.00000282,0.00000931,-0.303425072,0.761769475,loss,ns,-0.00000637,0.0000158,-0.402680775,0.687460622,neg,ns,0.01943047,0.004632085,4.194756749,0.0000357,pos,ns,4.447322394,-0.000436822,0.000159297,-2.74218803,0.006457839,neg,ns,0.43393332,Bcor,Bcor_Exon,X,12137448,12137497,12137448,12137449,50,-,CGTCCATCAGCAACCAGTCCAACCTGCCAGTGATAATGTGCGATCAACAC,"Exon (Bcor-208/Bcor, exon 2 of 5)",20,12036743,12160355,123613,2,Bcor-201,22858,Bcor-201;Bcor-208,Bcor;Bcor,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,74,71458,ENSMUSG00000040363,conserved gene but different region,X,12137394,12137618,225,*,225,20,0.635555556,0.882352941,0.088888889,1.63E-14,CpGisland,TRUE,U3,Pr-B
25243,cg01539117,-0.000125861,0.0000164,-7.670604303,2.23E-13,loss,yes,0.0000112,0.0000279,0.402656337,0.687478583,pos,ns,-0.018760974,0.008166532,-2.297299977,0.022267716,neg,ns,1.652324336,0.000363786,0.000280846,1.295319307,0.196173867,pos,ns,0.766060806,Etv6,Etv6_Intron,6,134152241,134152290,134152241,134152242,50,+,CGGGTTCACTTCAAAACAGCTATTGAGAGTGCAGGCAAAGCCCTATTATA,"Intron (Etv6-201/Etv6, intron 2 of 7)",6,134035700,134270155,234456,1,Etv6-201,116541,Etv6-201;Etv6-202;Etv6-204,Etv6;Etv6;Etv6,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,7,14011,ENSMUSG00000030199,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19646,cg26228849,0.0000151,0.0000155,0.97494509,0.330347652,gain,ns,0.0000106,0.0000264,0.40263449,0.687494641,pos,ns,0.01616631,0.007732399,2.090723706,0.037366963,pos,ns,1.427512202,-0.000364943,0.000265917,-1.372396143,0.170932293,neg,ns,0.494088625,Gm28267,Gm28267_Intergenic_upstream,9,100267097,100267146,100267097,100267098,50,-,CGGCTTCTGTGTGCCTTTTTTTATGCAGGAAATAATGGGTGAGCTGGGTA,Distal Intergenic,9,100404495,100404759,265,1,Gm28267-201,-137398,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,29,29,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26781,cg10288121,-0.00000151,0.00000141,-1.071334235,0.284852529,loss,ns,0.000000964,0.0000024,0.402518342,0.68758001,pos,ns,0.001915896,0.000701691,2.730397363,0.006687686,pos,ns,2.174724128,-0.0000774,0.0000241,-3.20607306,0.001485984,neg,ns,0.959605036,Kdm5c,Kdm5c_Exon,X,152239672,152239721,152239720,152239721,50,-,AAATTCTGGGAAATCCAGGGCTCCTCCTTAAAGATTCCCAATGTAGAACG,"Exon (Kdm5c-202/Kdm5c, exon 3 of 26)",20,152233020,152273768,40749,1,Kdm5c-202,6652,Kdm5c-202;Kdm5c-203;Kdm5c-204;Kdm5c-201,Kdm5c;Kdm5c;Kdm5c;Kdm5c,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,7,20591,ENSMUSG00000025332,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1066,cg01307387,0.0000252,0.00000349,7.22662426,3.87E-12,gain,yes,0.00000239,0.00000593,0.402455158,0.687626453,pos,ns,0.002884213,0.001736468,1.660964982,0.097731477,pos,ns,1.009965539,0.000047,0.0000597,0.786861975,0.431963796,pos,ns,0.045273027,Vsnl1,Vsnl1_fiveUTR,12,11436552,11436601,11436552,11436553,50,-,CGCTCGGGTAAATCTCTGCTGCAGATTGGGAATCCCATAGAAAACCTAGG,Promoter (<=1kb),12,11325242,11436613,111372,2,Vsnl1-201,12,Vsnl1-202;Vsnl1-201,Vsnl1;Vsnl1,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,6,26950,ENSMUSG00000054459,conserved gene and region,12,11436443,11436557,115,*,115,10,0.6,0.99137931,0.086956522,0.000000242,CpGisland,TRUE,U3,Pr-B
18603,cg17146698,0.0000578,0.00000787,7.351657862,1.75E-12,gain,yes,-0.00000538,0.0000134,-0.402359674,0.68769664,neg,ns,0.00948,0.003914526,2.42174929,0.016019503,pos,ns,1.795350968,-0.000106212,0.00013462,-0.788973155,0.43073067,neg,ns,0.510462063,Hoxb5,Hoxb5_Intergenic_downstream,11,96306961,96307010,96306961,96306962,50,-,CGCCGAGAAGTCAGACAGATACCCCTCACTGGCTCGAGAAAGTCACGTGA,Downstream (<1kb),11,96303512,96306120,2609,1,Hoxb5-201,3498,Hoxb5-202;Hoxb5-201,Hoxb5;Hoxb5,0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,8,34,15413,ENSMUSG00000038700,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
5842,cg02374677,0.0000372,0.00000836,4.457419125,0.0000116,gain,ns,0.00000571,0.0000142,0.402285912,0.687750861,pos,ns,0.005059821,0.004158842,1.216641879,0.224665985,pos,ns,0.648462676,-0.0000323,0.000143022,-0.225900624,0.821427576,neg,ns,0.648653287,Sox2,Sox2_Intergenic_downstream,3,34959183,34959232,34959231,34959232,50,-,AGCTGTTGACACAGAATATTGTGTCTGTCGACAGCTCCAATTAGCTGGCG,Distal Intergenic,3,34650405,34652461,2057,1,Sox2-201,308827,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,62,20674,ENSMUSG00000074637,mapped to different genes,3,34959186,34959396,211,*,211,14,0.549763033,0.878382397,0.066350711,1.38E-08,CpGisland,TRUE,U15,NS
10364,cg06571779,0.0000128,0.00000279,4.598018759,0.00000622,gain,ns,0.0000019,0.00000474,0.402140319,0.687857889,pos,ns,-0.000840072,0.001387748,-0.605349014,0.545390018,neg,ns,0.263292815,0.0000175,0.0000477,0.36708412,0.713806726,pos,ns,0.936743566,Add3,Add3_Exon,19,53244331,53244380,53244379,53244380,50,+,CAGATGACGCTTCATCTGTTTCACAAATTCAGTCTCAAACTCAGTCACCG,"Exon (Add3-212/Add3, exon 14 of 15)",19,53140443,53247399,106957,1,Add3-203,103888,Add3-203;Add3-205;Add3-212;Add3-216;Add3-211;Add3-202;Add3-215;Add3-213;Add3-201;Add3-206;Add3-207,Add3;Add3;Add3;Add3;Add3;Add3;Add3;Add3;Add3;Add3;Add3,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,3,27360,ENSMUSG00000025026,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4141,cg27263887,-0.000031,0.0000112,-2.773705892,0.005878071,loss,ns,0.00000764,0.000019,0.402055351,0.687920353,pos,ns,0.006904885,0.005563476,1.241109929,0.215503489,pos,ns,0.666545695,-0.000423651,0.000191327,-2.214272589,0.027537298,neg,ns,0.605584517,Gm12074,Gm12074_Intergenic_upstream,11,26962217,26962266,26962265,26962266,50,-,GAAGCGATTAAGTCTGCTTTACTGAGTGGGCATGAAATGGCCAACCTTCG,Distal Intergenic,11,27051697,27051915,219,1,Gm12074-201,-89480,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,10,100042367,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6768,cg18645607,0.0000602,0.00000497,12.12391414,5.96E-28,gain,yes,0.00000339,0.00000844,0.402025347,0.687942411,pos,ns,0.004878933,0.002473224,1.972701749,0.049417845,pos,ns,1.306116196,0.000051,0.0000851,0.600050793,0.548910753,pos,ns,0.065222806,Lhx2,Lhx2_Intron,2,38357396,38357445,38357444,38357445,50,-,CACGAGTAAATTATTCATGATTTTACGAGCTCTTTAGCTCCATTGAATCG,"Intron (Lhx2-203/Lhx2, intron 3 of 4)",2,38339281,38369199,29919,1,Lhx2-203,18115,Lhx2-203;Lhx2-204;Lhx2-202;Lhx2-201;Lhx2-207;Lhx2-205;Lhx2-206,Lhx2;Lhx2;Lhx2;Lhx2;Lhx2;Lhx2;Lhx2,0;0;0;0;5628;4864;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,33,16870,ENSMUSG00000000247,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
17024,cg07467137,-0.00000765,0.00000406,-1.886595289,0.060149186,loss,ns,-0.00000277,0.00000689,-0.401962777,0.687988411,neg,ns,0.009256387,0.0020183,4.58622884,0.00000656,pos,ns,5.183231747,-0.000230521,0.0000694,-3.321187564,0.001003462,neg,ns,0.929271861,Dynll2,Dynll2_threeUTR,11,87981285,87981334,87981285,87981286,50,+,CGACATACACATGAAATCGAGTATACAGTCCATGCAGTAGCACAGCCATT,3' UTR,11,87979525,87984012,4488,2,Dynll2-204,2678,Dynll2-204;Dynll2-202;Dynll2-201;Dynll2-203,Dynll2;Dynll2;Dynll2;Dynll2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,5,68097,ENSMUSG00000020483,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10972,cg16666801,0.000000526,0.00000319,0.165042133,0.869018389,gain,ns,0.00000218,0.00000541,0.4019571,0.687992585,pos,ns,0.003963095,0.00158606,2.498704801,0.012982168,pos,ns,1.886652772,-0.0000888,0.0000545,-1.628712784,0.104389607,neg,ns,0.939867411,Tcf7l2,Tcf7l2_threeUTR,19,55931560,55931609,55931560,55931561,50,+,CGCCAAGTCACAGACTGAGCAGACCCAGCCTCTGTCGCTGTCCCTGAAGC,3' UTR,19,55741820,55933229,191410,1,Tcf7l2-213,189740,Tcf7l2-213;Tcf7l2-201;Tcf7l2-211;Tcf7l2-212;Tcf7l2-222;Tcf7l2-215;Tcf7l2-202;Tcf7l2-209;Tcf7l2-210;Tcf7l2-203,Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,7,88,21416,ENSMUSG00000024985,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17899,cg02793322,-0.00000246,0.00000506,-0.487382048,0.626332083,loss,ns,-0.00000345,0.00000859,-0.40195015,0.687997695,neg,ns,-0.001678117,0.002516665,-0.666801951,0.505394626,neg,ns,0.29636938,-0.000192642,0.0000865,-2.225845254,0.026743371,neg,ns,0.907351106,Dlg2,Dlg2_Exon,7,92417191,92417240,92417239,92417240,50,+,CTGTTTTTGCCCCATGCCTTTTCTCCTTCACAGTCATTCAATGACAAGCG,"Exon (Dlg2-201/Dlg2, exon 17 of 23)",7,90477231,92449247,1972017,1,Dlg2-217,1939960,Dlg2-217;Dlg2-204;Dlg2-201;Dlg2-220;Dlg2-218;Dlg2-219;Dlg2-203;Dlg2-202;Dlg2-212;Dlg2-208;Dlg2-207;Dlg2-214,Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,21,23859,ENSMUSG00000052572,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25033,cg11589307,0.000000555,0.00000179,0.311105688,0.755929371,gain,ns,0.00000122,0.00000303,0.40194565,0.688001003,pos,ns,0.002280905,0.000888659,2.566681208,0.01073696,pos,ns,1.969118675,-0.000103403,0.0000306,-3.383516322,0.000807552,neg,ns,0.953924688,Fgfr2,Fgfr2_Intron,7,131713259,131713308,131713259,131713260,50,+,CGGCAAAGTGTTTACTAACTGGTTTATATATAATTTCTGTAATAACGACA,"Intron (Fgfr2-217/Fgfr2, intron 2 of 6)",7,130162451,133123350,2960900,2,Fgfr2-217,1410042,Fgfr2-217,Fgfr2,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,58,79,14183,ENSMUSG00000030849,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20265,cg01017056,0.0000839,0.0000115,7.268886275,2.97E-12,gain,yes,0.00000788,0.0000196,0.401895154,0.688038128,pos,ns,0.013226715,0.005744501,2.302500359,0.021969154,pos,ns,1.658186661,-0.000282675,0.000197553,-1.430881729,0.15347137,neg,ns,0.574947838,Hoxc5,Hoxc5_Intron,15,102975392,102975441,102975440,102975441,50,-,GATGGATTTTTATTTCTTAAAGGACCCTCCCCGCCGAGAGCGCATAAGCG,"Intron (Hoxc5-202/Hoxc5, intron 1 of 1)",15,102967443,103015676,48234,1,Hoxc5-202,7949,Hoxc10-201;Hoxc5-202;Hoxc9-202;Hoxc9-201,Hoxc10;Hoxc5;Hoxc9;Hoxc9,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,46,134,15424,ENSMUSG00000022485,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
5510,cg16919675,-0.00000703,0.00000255,-2.75731474,0.006173424,loss,ns,0.00000174,0.00000433,0.401889746,0.688042104,pos,ns,0.000681473,0.001268757,0.537118117,0.591571328,pos,ns,0.227992883,-0.0000546,0.0000436,-1.250387789,0.212100926,neg,ns,0.950189846,Kalrn,Kalrn_threeUTR,16,34153441,34153490,34153441,34153442,50,-,CGCTAAACGTAAGTGGAGAAAGGATCTCCAGGTCCCAGGTGCCACCGAGG,3' UTR,16,33975495,34456917,481423,2,Kalrn-201,303427,Kalrn-201;Kalrn-209;Kalrn-217;Kalrn-208;Kalrn-207;Kalrn-206;Kalrn-202;Kalrn-205;Kalrn-204;Kalrn-218,Kalrn;Kalrn;Kalrn;Kalrn;Kalrn;Kalrn;Kalrn;Kalrn;Kalrn;Kalrn,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,22,545156,ENSMUSG00000061751,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10816,cg01669013,-0.0000223,0.00000781,-2.854450933,0.004601598,loss,ns,-0.00000533,0.0000133,-0.401740866,0.688151565,neg,ns,-0.007518527,0.003886431,-1.93455841,0.053954185,neg,ns,1.267974867,0.0000269,0.000133654,0.201017962,0.840816355,pos,ns,0.83241493,Dclk1,Dclk1_Exon,3,55521966,55522015,55521966,55521967,50,+,CGTGCTGGCAGTCTCCATTAACCAGTTCCTTCGGTGGATAAACATGCTTT,"Exon (Dclk1-215/Dclk1, exon 13 of 13)",3,55242364,55539068,296705,1,Dclk1-204,279602,Dclk1-204;Dclk1-201;Dclk1-202;Dclk1-207;Dclk1-211;Dclk1-213;Dclk1-208;Dclk1-215,Dclk1;Dclk1;Dclk1;Dclk1;Dclk1;Dclk1;Dclk1;Dclk1,0;0;0;0;60050;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,13175,ENSMUSG00000027797,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1310,cg06327727,0.0000287,0.00000406,7.066428544,1.05E-11,gain,yes,-0.00000277,0.00000691,-0.401710657,0.688173777,neg,ns,0.006545858,0.002023016,3.235692218,0.001344624,pos,ns,2.871399054,-0.000121286,0.0000696,-1.743332897,0.082266898,neg,ns,0.063169319,Fezf2,Fezf2_Intergenic_downstream,14,12341361,12341410,12341361,12341362,50,-,CGGCCCCCTCCTGGGAATGATTAGATGATTAATGTAATGCTGTTTGAAGG,Distal Intergenic,14,12342094,12345844,3751,2,Fezf2-203,4483,Fezf2-203;Fezf2-201;Fezf2-202,Fezf2;Fezf2;Fezf2,0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,21,45,54713,ENSMUSG00000021743,mapped to different genes,14,12341297,12341362,66,*,66,10,0.606060606,1.654135338,0.151515152,8.07E-10,CpGisland,TRUE,NA,NRS
4900,cg24655222,-0.00000976,0.00000381,-2.562941701,0.010850812,loss,ns,0.0000026,0.00000647,0.401644451,0.688222457,pos,ns,0.000231939,0.001894372,0.122435608,0.902633373,pos,ns,0.044488614,-0.0000488,0.0000651,-0.749741219,0.453979169,neg,ns,0.985549441,Zfp513,Zfp513_Exon,5,31200500,31200549,31200548,31200549,50,+,GAACGGCTTCTCTCCGCTGTGTGTCTGCATGTGCCGCTTCAGGTGGCTCG,"Exon (Zfp513-202/Zfp513, exon 3 of 4)",5,31198981,31202303,3323,2,Zfp513-202,1754,Ppm1g-205;Ppm1g-201;Ppm1g-206;Ppm1g-203;Ppm1g-204;Snx17-201;Snx17-202;Snx17-204;Snx17-210;Snx17-208;Snx17-207;Snx17-211;Snx17-209;Snx17-206;Snx17-203;Zfp513-202;Zfp513-201;Zfp513-205;Zfp513-207;Zfp513-203;Zfp513-204;Zfp513-208;Zfp513-206,Ppm1g;Ppm1g;Ppm1g;Ppm1g;Ppm1g;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Zfp513;Zfp513;Zfp513;Zfp513;Zfp513;Zfp513;Zfp513;Zfp513,0;0;4534;0;0;0;0;0;0;0;0;5657;0;0;0;0;0;0;-214;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,15,15,101023,ENSMUSG00000043059,conserved gene and region,5,31200414,31200657,244,*,244,21,0.68442623,0.738115817,0.086065574,6.37E-15,CpGisland,TRUE,NA,NRS
4282,cg21123867,-0.0000349,0.000012,-2.920543727,0.003750538,loss,ns,-0.00000815,0.0000203,-0.401644159,0.688222671,neg,ns,-0.004472541,0.005948001,-0.751940127,0.452657586,neg,ns,0.344230197,-0.00031741,0.000204551,-1.551738834,0.121745006,neg,ns,0.085345551,Dyrk1b,Dyrk1b_fiveUTR,7,28179510,28179559,28179558,28179559,50,+,GCCATTTTGCTGGTTGCATTACTGGGTAATCGGGGCCCTGGCTTGCCGCG,Promoter (<=1kb),7,28179469,28187294,7826,1,Dyrk1b-201,41,Dyrk1b-201;Dyrk1b-203;Dyrk1b-202;Fbl-201;Fbl-206;Fbl-203;Fbl-202;Fbl-205,Dyrk1b;Dyrk1b;Dyrk1b;Fbl;Fbl;Fbl;Fbl;Fbl,0;0;0;9800;9743;9740;4638;4516,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,8,13549,ENSMUSG00000002409,conserved gene and region,7,28179302,28179897,596,*,596,47,0.66442953,0.726094507,0.07885906,6.45E-31,CpGisland,TRUE,U1,Pr-A
8760,cg05651663,0.0000301,0.00000969,3.103050367,0.002091827,gain,ns,-0.00000661,0.0000165,-0.401528078,0.688308026,neg,ns,0.007073595,0.004823155,1.466590778,0.143501084,pos,ns,0.843144817,-0.000253959,0.000165868,-1.531091982,0.126766465,neg,ns,0.58018133,Fgf8,Fgf8_Intergenic_downstream,19,45718237,45718286,45718285,45718286,50,+,TCTTGGAGAAATTCAACCTTCCTTTGAAATGGTCATTTGGAAATTACCCG,Distal Intergenic,19,45736971,45742684,5714,2,Fgf8-203,24398,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,18,14179,ENSMUSG00000025219,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
2778,cg13055846,0.00000305,0.00000234,1.30584486,0.192573511,gain,ns,0.00000159,0.00000397,0.401509432,0.688321738,pos,ns,0.00152731,0.001163412,1.312784468,0.1902266,pos,ns,0.720728755,0.0000339,0.00004,0.846089785,0.39815528,pos,ns,0.052734689,Prdm13,Prdm13_Promoter,4,21689661,21689710,21689661,21689662,50,-,CGTGTGTCAGCCGCCCCTAATTGGGATTAAAGCACTTAGGAGCATATGCA,Promoter (3-4kb),4,21677480,21685963,8484,2,Prdm13-205,-3747,Prdm13-205;Prdm13-201;Prdm13-202;Prdm13-203;Prdm13-206;Prdm13-204,Prdm13;Prdm13;Prdm13;Prdm13;Prdm13;Prdm13,0;0;0;0;0;-3816,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,19,23,230025,ENSMUSG00000040478,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
21944,cg01301379,-0.00000143,0.00000149,-0.962652463,0.336472252,loss,ns,0.00000101,0.00000252,0.401453624,0.688362775,pos,ns,0.002110934,0.000739617,2.854092739,0.004606654,pos,ns,2.336614389,-0.0000675,0.0000254,-2.651893088,0.008415876,neg,ns,0.964126021,Ap1g1,Ap1g1_fiveUTR,8,109802935,109802984,109802983,109802984,50,+,TTCCATATCCAGAGGATGCCAGCCCCCATCAGATTGCGGGAGCTGATCCG,5' UTR,8,109778554,109864204,85651,1,Ap1g1-202,24381,Ap1g1-202;Ap1g1-204;Ap1g1-201,Ap1g1;Ap1g1;Ap1g1,0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,16,11765,ENSMUSG00000031731,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4058,cg07687140,0.00000632,0.00000518,1.221520356,0.222817178,gain,ns,0.00000353,0.00000879,0.401362698,0.688429638,pos,ns,-0.004667113,0.00257626,-1.811584677,0.071018035,neg,ns,1.148631346,0.000148431,0.0000886,1.675338376,0.094876194,pos,ns,0.783474718,Gm45647,Gm45647_Intergenic_upstream,8,26677599,26677648,26677647,26677648,50,+,CGAGTCGGTGGTTTGTCATAACAGTCATCAGTAACTGTCGCTTTCTGCCG,Distal Intergenic,8,26780315,26780509,195,1,Gm45647-201,-102667,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,46,62,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11152,cg22580162,-0.00000581,0.00000509,-1.141731977,0.254446582,loss,ns,0.00000347,0.00000864,0.401334193,0.688450599,pos,ns,-0.002492395,0.002531155,-0.984686887,0.325545791,neg,ns,0.487387916,-0.0000629,0.000087,-0.722830008,0.470329307,neg,ns,0.840060856,Fhl1,Fhl1_Exon,X,56790511,56790560,56790511,56790512,50,-,CGATTGCTTTGTGTGTGTTACCTGCTCTAAGAAGCTGGCTGGGCAGCGTT,"Exon (Fhl1-201/Fhl1, exon 6 of 7)",20,56731787,56793346,61560,1,Fhl1-201,58724,Fhl1-201;Fhl1-203;Fhl1-206;Fhl1-205;Fhl1-204;Fhl1-202;Fhl1-210;Fhl1-207;Fhl1-208;Fhl1-209,Fhl1;Fhl1;Fhl1;Fhl1;Fhl1;Fhl1;Fhl1;Fhl1;Fhl1;Fhl1,0;0;0;0;0;0;10692;0;2786;2513,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,11,14199,ENSMUSG00000023092,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26522,cg00437358,0.0000909,0.0000139,6.534390723,2.62E-10,gain,yes,-0.00000948,0.0000236,-0.401195532,0.68855257,neg,ns,0.022391015,0.0069227,3.234433845,0.001350367,pos,ns,2.869548152,-0.000571236,0.000238071,-2.399434423,0.01701043,neg,ns,0.427563623,Casz1,Casz1_Intron,4,148872907,148872956,148872955,148872956,50,+,CTTTAAAACAGCCTTGTAAATAAGCAAACACTCGGTGCCAAGCACCTTCG,"Intron (Casz1-201/Casz1, intron 2 of 15)",4,148804429,148945129,140701,1,Casz1-201,68478,Casz1-201;Casz1-202,Casz1;Casz1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,94,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25147,cg24837228,0.00000381,0.00000384,0.991696555,0.322118994,gain,ns,0.00000262,0.00000652,0.401188914,0.688557438,pos,ns,0.007526436,0.001910155,3.940222122,0.000100634,pos,ns,3.997256409,-0.000237067,0.0000657,-3.608873089,0.000358431,neg,ns,0.921096037,Ahdc1,Ahdc1_threeUTR,4,133077391,133077440,133077439,133077440,50,+,TTATAAATCGTGGATTGTATATTGCATTCTGTAAACCTGCTGTGGTCCCG,3' UTR,4,133011506,133077863,66358,1,Ahdc1-203,65885,Ahdc1-203;Ahdc1-204;Ahdc1-211;Ahdc1-201;Ahdc1-202,Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,49,230793,ENSMUSG00000037692,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27255,cg21450888,-0.0000216,0.00000742,-2.913768153,0.003830649,loss,ns,0.00000506,0.0000126,0.401127316,0.688602738,pos,ns,-0.009589939,0.00369208,-2.597435199,0.009840384,neg,ns,2.006987936,0.000316512,0.00012697,2.492802622,0.013195537,pos,ns,0.848479114,Dnm3,Dnm3_Intron,1,162217549,162217598,162217549,162217550,50,-,CGGCACAGCGCATACCCAAACCTCCCCAGGGTGACATCATCCCATATATG,"Intron (Dnm3-203/Dnm3, intron 3 of 8)",1,161982453,162295636,313184,2,Dnm3-203,78038,Dnm3-203;Dnm3-202;Dnm3-201;Dnm3-205,Dnm3;Dnm3;Dnm3;Dnm3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,6,103967,ENSMUSG00000040265,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6718,cg21933681,-0.00000125,0.00000106,-1.183850822,0.237379082,loss,ns,0.000000719,0.00000179,0.401077694,0.688639233,pos,ns,0.0001776,0.000525166,0.338179721,0.735456668,pos,ns,0.13344291,-0.0000329,0.0000181,-1.820741475,0.06961013,neg,ns,0.031073109,Pcdh1,Pcdh1_threeUTR,18,38185916,38185965,38185916,38185917,50,+,CGGTTTTCACACTTTTATTGTAAAGCTCGGGAATAATTACACGGGTCTTT,3' UTR,18,38185914,38212053,26140,2,Pcdh1-203,26088,Pcdh1-203;Pcdh1-204,Pcdh1;Pcdh1,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,10,17,75599,ENSMUSG00000051375,conserved gene but different region,18,38185887,38186045,159,*,159,14,0.566037736,1.156363636,0.088050315,3.20E-10,CpGisland,TRUE,U1,Pr-A
13758,cg18033250,-0.00000902,0.0000047,-1.920871939,0.055664843,loss,ns,0.0000032,0.00000798,0.400940949,0.688739805,pos,ns,-0.0000362,0.002336973,-0.015477456,0.987661226,neg,ns,0.005391995,-0.0000395,0.0000804,-0.491295834,0.62356487,neg,ns,0.528427357,Gm11235,Gm11235_Intergenic_upstream,4,72385056,72385105,72385104,72385105,50,+,TGTTTACTTCCTCCAGAAACAAGAGCATCATCAGCACGCTCAGTGCATCG,Distal Intergenic,4,72542666,72542998,333,1,Gm11235-201,-157561,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,8,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16713,cg13529847,0.00000764,0.00000308,2.481487949,0.0136133,gain,ns,0.0000021,0.00000523,0.400870131,0.688791892,pos,ns,0.000354873,0.001532874,0.231508365,0.817072623,pos,ns,0.087739341,-0.000022,0.0000527,-0.417331698,0.676724679,neg,ns,0.054276226,Gpatch2l,Gpatch2l_Intergenic_upstream,12,86216861,86216910,86216909,86216910,50,-,CCACACAATTCTCTCAATTAACGATAGGCAGAAATTAATTTTTCCCCTCG,Distal Intergenic,12,86241858,86291784,49927,1,Gpatch2l-204,-24997,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,13,17,70373,ENSMUSG00000021254,conserved gene but different region,12,86216882,86217003,122,*,122,9,0.532786885,1.082840237,0.073770492,0.0000048,CpGisland,TRUE,U13,Hc-P
18173,cg10411593,-0.000021,0.0000101,-2.084389438,0.037943122,loss,ns,0.00000685,0.0000171,0.400856434,0.688801966,pos,ns,0.00295789,0.005004121,0.591090731,0.554890358,pos,ns,0.255792822,-0.000125128,0.000172091,-0.727099942,0.467713458,neg,ns,0.777630466,Slc12a3,Slc12a3_Exon,8,94324343,94324392,94324343,94324344,50,+,CGCATCCTCTTACCCGGCTATTTCACGACACCAGGGTTGCATCATACCCA,Promoter (4-5kb),8,94329201,94366214,37014,1,Slc12a3-201,-4809,Slc12a3-201;Slc12a3-205;Slc12a3-204,Slc12a3;Slc12a3;Slc12a3,-4809;-4813;-4818,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,20497,ENSMUSG00000031766,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9152,cg17148401,-0.0000172,0.00000712,-2.420694987,0.016065147,loss,ns,-0.00000485,0.0000121,-0.400850919,0.688806023,neg,ns,-0.006168033,0.003544167,-1.740333572,0.082792771,neg,ns,1.082007582,-0.0000642,0.000121884,-0.527106143,0.598496878,neg,ns,0.732924789,Gm4791,Gm4791_Intron,9,47242489,47242538,47242489,47242490,50,-,CGAGGAAGAAAAAGATGGAGAATTATATGAAATTATAGTGGAATGAAGCA,"Intron (Gm31816-206/Gm31816-206, intron 3 of 3)",9,46998741,47003860,5120,1,Gm4791-201,243797,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,18,215467,ENSMUSG00000094893,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8343,cg11643979,0.000000115,0.00000202,0.056633158,0.954873905,gain,ns,-0.00000138,0.00000344,-0.400702793,0.688914976,neg,ns,0.001563103,0.001007472,1.551510397,0.121799696,pos,ns,0.914353797,-0.0000519,0.0000346,-1.497800505,0.13520261,neg,ns,0.947750517,Zeb2,Zeb2_Intron,2,45032338,45032387,45032338,45032339,50,+,CGCGTCAAGTAAAAGAAAGGTTAAAATTAGAAAATTCAATTTATTTGATA,"Intron (Zeb2-212/Zeb2, intron 3 of 10)",2,44983632,45117395,133764,2,Zeb2-212,85008,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-218;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9557,cg15731118,-0.0000282,0.00000858,-3.285768514,0.001133648,loss,ns,0.00000584,0.0000146,0.400623271,0.68897347,pos,ns,-0.003473693,0.004269894,-0.813531537,0.416537776,neg,ns,0.380345606,0.000218325,0.000146841,1.486808917,0.13808164,pos,ns,0.820025855,Drd2,Drd2_Promoter,9,49338598,49338647,49338598,49338599,50,-,CGTTTGCTAATTGAAAACTAAAAGATCCATCCGTCTCACTCACAGCCAGC,Promoter (2-3kb),9,49340627,49408177,67551,1,Drd2-201,-2029,Drd2-201,Drd2,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,2,13489,ENSMUSG00000032259,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12719,cg24378708,0.0000371,0.00000579,6.417614223,5.18E-10,gain,yes,-0.00000394,0.00000983,-0.400588484,0.68899906,neg,ns,0.008323698,0.002880219,2.889952547,0.004124784,pos,ns,2.384598795,-0.0000936,0.0000991,-0.945198881,0.345293469,neg,ns,0.02464062,Shox2,Shox2_Exon,3,66973868,66973917,66973868,66973869,50,-,CGTGCGCCACAGCGCTGTCCAGCTGCAGCTGCGCCTGAACCTGAAAGGAC,"Exon (Shox2-203/Shox2, exon 5 of 5)",3,66971727,66981318,9592,2,Shox2-203,7401,Shox2-203;Shox2-201;Shox2-202;Shox2-204;Shox2-205,Shox2;Shox2;Shox2;Shox2;Shox2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,7,20429,ENSMUSG00000027833,conserved gene and region,3,66973394,66973929,536,*,536,59,0.695895522,0.934184096,0.110074627,1.14E-47,CpGisland,TRUE,U3,Pr-B
23140,cg00543458,0.0000655,0.00000711,9.20922654,5.08E-18,gain,yes,0.00000484,0.0000121,0.400501185,0.689063278,pos,ns,0.004632216,0.003538242,1.309185627,0.191441039,pos,ns,0.717964957,0.0000215,0.00012168,0.176333877,0.860146788,pos,ns,0.676675202,Rnf220,Rnf220_Intron,4,117322236,117322285,117322284,117322285,50,-,TTTAGTGTCGTGGAGAATTCACGTCTTCACTCCCAGGAGCCCAGCTTCCG,"Intron (Rnf220-201/Rnf220, intron 2 of 14)",4,117271463,117497052,225590,2,Rnf220-201,174767,Rnf220-201;Rnf220-202;Rnf220-207,Rnf220;Rnf220;Rnf220,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12501,cg13733201,-0.0000185,0.00000806,-2.295106933,0.02239468,loss,ns,-0.00000548,0.0000137,-0.400478422,0.689080023,neg,ns,0.004598638,0.004010037,1.146782042,0.252356061,pos,ns,0.597986259,-0.0000791,0.000137905,-0.573870623,0.566471473,neg,ns,0.922128563,Rab11a,Rab11a_Exon,9,64726620,64726669,64726668,64726669,50,-,TAACCTGCAAAAGCTCTTGCTTCATCTGTAGGAACTGCCCTGAGATGACG,"Exon (Rab11a-208/Rab11a, exon 3 of 5)",9,64715299,64737758,22460,2,Rab11a-208,11089,Rab11a-208;Rab11a-204;Rab11a-209;Rab11a-205;Rab11a-203;Rab11a-207;Rab11a-206;Rab11a-201;Rab11a-202,Rab11a;Rab11a;Rab11a;Rab11a;Rab11a;Rab11a;Rab11a;Rab11a;Rab11a,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,3,53869,ENSMUSG00000004771,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20394,cg04293184,0.0000301,0.00000658,4.579695003,0.00000675,gain,ns,0.00000447,0.0000112,0.400291293,0.689217686,pos,ns,0.002194114,0.003272738,0.67042164,0.503088176,pos,ns,0.298355889,0.00000271,0.000112549,0.024087921,0.980797976,pos,ns,0.487791153,Hoxc4,Hoxc4_Intron,15,103026517,103026566,103026517,103026518,50,-,CGGCTTTGACTAATGATTGCTACAGATGCCAACGTCTCCAGAATCCTAAT,"Intron (Hoxc4-202/Hoxc4, intron 1 of 3)",15,103018934,103036405,17472,1,Hoxc4-202,7583,Hoxc4-202,Hoxc4,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,91,15423,ENSMUSG00000075394,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
24326,cg10075856,0.0000226,0.00000515,4.393604726,0.0000153,gain,ns,-0.0000035,0.00000874,-0.400283629,0.689223324,neg,ns,-0.004780691,0.002560768,-1.866897055,0.062859769,neg,ns,1.201627216,0.0000704,0.0000881,0.799220968,0.424774224,pos,ns,0.099024779,Pou3f1,Pou3f1_threeUTR,4,124659752,124659801,124659752,124659753,50,-,CGAGAGCCGCGTCTGTGTATAAAAGCAGGAAATAGCCAAAGCTTTAATCT,3' UTR,4,124656807,124660655,3849,1,Pou3f1-201,2945,Pou3f1-201,Pou3f1,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,85,18991,ENSMUSG00000090125,conserved gene and region,4,124659224,124659760,537,*,537,47,0.648044693,0.8390625,0.087523278,4.32E-33,CpGisland,TRUE,U3,Pr-B
10369,cg11991859,0.0000526,0.00000588,8.94392416,3.48E-17,gain,yes,-0.000004,0.00000998,-0.40017216,0.689305333,neg,ns,0.002163983,0.002925,0.739823081,0.45996724,pos,ns,0.337273099,-0.000171858,0.000100591,-1.708488439,0.088546714,neg,ns,0.048006222,Npas3,Npas3_Exon,12,53253050,53253099,53253050,53253051,50,-,CGCCCACCAAGCCCAGCTTTCAGCAGGATCCTTCCAGGCGAGAACGGTAA,"Exon (Npas3-202/Npas3, exon 1 of 2)",12,53248157,54069532,821376,1,Npas3-204,4893,Npas3-204;Npas3-201;Npas3-202;Npas3-203,Npas3;Npas3;Npas3;Npas3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,13,103,27386,ENSMUSG00000021010,conserved gene and region,12,53253050,53253346,297,*,297,40,0.747474748,0.967032967,0.134680135,1.92E-36,CpGisland,TRUE,NA,NRS
3695,cg02219744,-0.00000523,0.00000459,-1.139485619,0.255380361,loss,ns,0.00000312,0.00000779,0.400150226,0.68932147,pos,ns,0.000470126,0.00228318,0.205908492,0.836997549,pos,ns,0.077275814,-0.0000753,0.0000785,-0.958381682,0.33861717,neg,ns,0.900972142,Adgrb3,Adgrb3_threeUTR,1,25067904,25067953,25067952,25067953,50,+,TCGTTGCTTGAGGTTTATCTATAAAGATTACCTTACAAATCCATTCCACG,3' UTR,1,25067476,25228826,161351,2,Adgrb3-203,160873,Adgrb3-203;Adgrb3-206;Adgrb3-205;Adgrb3-207;Adgrb3-201;Adgrb3-208,Adgrb3;Adgrb3;Adgrb3;Adgrb3;Adgrb3;Adgrb3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,25,210933,ENSMUSG00000033569,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16500,cg10354618,-0.00000245,0.00000176,-1.386958564,0.166450832,loss,ns,0.0000012,0.000003,0.400141747,0.689327708,pos,ns,0.00131903,0.000877467,1.503224805,0.133799103,pos,ns,0.873546796,-0.0000761,0.0000302,-2.522467687,0.012153824,neg,ns,0.957072478,Rasa1,Rasa1_Exon,13,85224202,85224251,85224202,85224203,50,-,CGGTGGAAGTATTTCTGAAGCCATGAATATTTTCTCCACAAGCTCTGAAA,"Exon (Rasa1-201/Rasa1, exon 19 of 25)",13,85214780,85289029,74250,2,Rasa1-201,64778,Ccnh-203;Rasa1-201;Rasa1-210;Rasa1-204;Rasa1-206;Rasa1-207;Rasa1-208,Ccnh;Rasa1;Rasa1;Rasa1;Rasa1;Rasa1;Rasa1,21801;0;0;-2501;0;0;6795,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,218397,ENSMUSG00000021549,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5955,cg09968637,-0.00000195,0.00000113,-1.727608154,0.085054449,loss,ns,0.000000769,0.00000192,0.400136529,0.689331547,pos,ns,-0.000128817,0.000562809,-0.228882845,0.819110895,neg,ns,0.086657297,-0.0000128,0.0000194,-0.660156384,0.509643677,neg,ns,0.970156652,Slit3,Slit3_Intron,11,35556200,35556249,35556248,35556249,50,-,TCTGTAGGTTTTACATGACACCTGGAGACCATTTAAAATGTTACTTGGCG,"Intron (Slit3-201/Slit3, intron 6 of 35)",11,35121224,35708507,587284,1,Slit3-201,434976,Slit3-201;Slit3-202,Slit3;Slit3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,21,20564,ENSMUSG00000056427,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9324,cg02042680,0.00000126,0.0000015,0.840485409,0.401284063,gain,ns,-0.00000102,0.00000255,-0.400099932,0.689358472,neg,ns,-0.001801783,0.000746441,-2.413831622,0.016365105,neg,ns,1.786081216,0.0000622,0.0000257,2.422061219,0.01600602,pos,ns,0.964658991,Stx17,Stx17_Exon,4,48181498,48181547,48181546,48181547,50,+,GGCTGCAAAATACAAGCTGGCAGCTCTGCCTGTGGCAGGTGCACTCATCG,"Exon (Stx17-203/Stx17, exon 7 of 11)",4,48124915,48185911,60997,1,Stx17-203,56583,Stx17-203;Stx17-202;Stx17-201,Stx17;Stx17;Stx17,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,2,67727,ENSMUSG00000061455,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3667,cg14458704,0.0000458,0.0000144,3.182728384,0.001606961,gain,ns,-0.00000978,0.0000244,-0.400046128,0.689398059,neg,ns,0.001857695,0.007159102,0.259487072,0.795431693,pos,ns,0.099397109,0.0000227,0.000246201,0.09203232,0.926731804,pos,ns,0.590532544,Erfl,Erfl_Promoter,7,24952561,24952610,24952609,24952610,50,+,GGGGCTTTTGGAGCCTGTCAGCCCTGATGTATGAGCTCACACTGGGGCCG,Promoter (8-9kb),7,24927445,24944494,17050,2,Erfl-201,-8067,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,29,36,,NA,mapped to different genes,7,24952497,24952630,134,*,134,13,0.649253731,0.921693122,0.097014925,4.65E-10,CpGisland,TRUE,U13,Hc-P
6767,cg14994401,0.0000357,0.00000561,6.361156115,7.18E-10,gain,yes,-0.00000381,0.00000952,-0.399962982,0.689459236,neg,ns,0.002116187,0.002790058,0.75847434,0.448743323,pos,ns,0.348002001,0.000186754,0.0000959,1.946373836,0.052513058,pos,ns,0.087185045,Lhx2,Lhx2_Intron,2,38357373,38357422,38357421,38357422,50,+,AACCCGATGGGTTAATAACAGATCACGAGTAAATTATTCATGATTTTACG,"Intron (Lhx2-203/Lhx2, intron 3 of 4)",2,38339281,38369199,29919,1,Lhx2-203,18092,Lhx2-203;Lhx2-204;Lhx2-202;Lhx2-201;Lhx2-207;Lhx2-205;Lhx2-206,Lhx2;Lhx2;Lhx2;Lhx2;Lhx2;Lhx2;Lhx2,0;0;0;0;5605;4841;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,33,16870,ENSMUSG00000000247,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
20094,cg02516694,-0.0000428,0.00000977,-4.383233898,0.000016,loss,ns,-0.00000664,0.0000166,-0.399953308,0.689466353,neg,ns,0.011008112,0.004860369,2.264871392,0.024210684,pos,ns,1.615992936,-0.00067345,0.000167148,-4.029069957,0.0000705,neg,ns,0.249097625,Ngf,Ngf_Intergenic_downstream,3,102526590,102526639,102526638,102526639,50,-,CCATTCCTTTCACTTTGACATAATGAAAGTGCAACTTGCACACTGTCTCG,Distal Intergenic,3,102488694,102520995,32302,1,Ngf-204,37945,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,2,18049,ENSMUSG00000027859,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3735,cg01171272,0.00000371,0.000000681,5.445407717,0.000000105,gain,yes,0.000000462,0.00000116,0.399703776,0.689649965,pos,ns,0.000794939,0.000338777,2.346500034,0.019580057,pos,ns,1.708186052,0.0000143,0.0000117,1.231703266,0.21899345,pos,ns,0.014284836,Pou2f2,Pou2f2_Promoter,7,25179910,25179959,25179910,25179911,50,-,CGCGCCATCCCCGGCTCCCACCTTGTCCCCATGGCAACCCCGGGCCCAAG,Promoter (<=1kb),7,25120618,25179726,59109,2,Pou2f2-208,-233,Pou2f2-208,Pou2f2,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,11,29,18987,ENSMUSG00000008496,conserved gene but different region,7,25179573,25180057,485,*,485,61,0.771134021,0.853947179,0.125773196,3.02E-53,CpGisland,TRUE,U3,Pr-B
1935,cg07010440,-0.0000128,0.00000309,-4.144364555,0.000044,loss,ns,-0.0000021,0.00000525,-0.3996959,0.68965576,neg,ns,-0.000739872,0.001539273,-0.4806636,0.631094643,neg,ns,0.199905506,-0.0000434,0.0000529,-0.819738607,0.412994939,neg,ns,0.925248241,Tfec,Tfec_Intergenic_downstream,6,16548210,16548259,16548210,16548211,50,+,CGAAAATTAATCGGCTATCAAACAATCTTCAGCCACTGAGGATGATTATA,Distal Intergenic,6,16834692,16835263,572,2,Tfec-204,287004,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,19,23,21426,ENSMUSG00000029553,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11008,cg23827755,-0.00000433,0.00000767,-0.565058457,0.572442688,loss,ns,-0.0000052,0.000013,-0.399642116,0.689695338,neg,ns,0.005097644,0.0038153,1.336105823,0.18249464,pos,ns,0.738749886,-0.000228493,0.000131208,-1.741456363,0.082595592,neg,ns,0.883180589,Gm13518,Gm13518_Intergenic_downstream,2,56227814,56227863,56227862,56227863,50,+,ACACTGTTGGTGACAGGTTCTGTTCTCCTGGATGGCATATGAAAGGAACG,Distal Intergenic,2,56039853,56040085,233,1,Gm13518-201,187961,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,37,37,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7502,cg07810111,0.0000333,0.00000426,7.8232588,8.16E-14,gain,yes,0.00000289,0.00000723,0.399586322,0.689736396,pos,ns,0.007512354,0.002119125,3.545026194,0.000453111,pos,ns,3.343795462,-0.00012151,0.0000729,-1.667338712,0.09645693,neg,ns,0.070416084,Ppp2r2b,Ppp2r2b_fiveUTR,18,42898792,42898841,42898792,42898793,50,-,CGGGTATCAATGTCCTCCTCCATTGACAGCAGGCTTACTTGCGTGGGAAC,Promoter (<=1kb),18,42758468,42898815,140348,2,Ppp2r2b-206,0,Ppp2r2b-204;Ppp2r2b-202;Ppp2r2b-201;Ppp2r2b-203;Ppp2r2b-208;Ppp2r2b-207;Ppp2r2b-205;Ppp2r2b-206,Ppp2r2b;Ppp2r2b;Ppp2r2b;Ppp2r2b;Ppp2r2b;Ppp2r2b;Ppp2r2b;Ppp2r2b,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,9,15,72930,ENSMUSG00000024500,conserved gene and region,18,42898666,42898793,128,*,128,11,0.6015625,0.951351351,0.0859375,5.43E-08,CpGisland,TRUE,U3,Pr-B
6702,cg04258655,-0.0000204,0.00000481,-4.233307287,0.0000304,loss,ns,0.00000327,0.00000818,0.399536108,0.689773349,pos,ns,-0.008572931,0.002396462,-3.577328365,0.00040261,neg,ns,3.395115761,0.0000176,0.0000824,0.213425798,0.831135154,pos,ns,0.831720047,Ccne1,Ccne1_Intergenic_upstream,7,38130018,38130067,38130018,38130019,50,+,CGGGGCTGGGAAGTCTTTGATTACCTTACATCTGTTTTTATGGAAACTTC,Distal Intergenic,7,38097984,38107534,9551,2,Ccne1-201,-22484,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,12447,ENSMUSG00000002068,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22235,cg23220346,0.000157486,0.0000186,8.453116968,1.13E-15,gain,yes,-0.0000126,0.0000317,-0.399387244,0.689882902,neg,ns,0.022261113,0.009272582,2.400745947,0.016950729,pos,ns,1.770811623,-0.000834078,0.000318883,-2.615621454,0.009342307,neg,ns,0.213307094,Arpp21,Arpp21_Exon,9,112118652,112118701,112118652,112118653,50,+,CGGTTCACTGTGAGACCTGCTACTCACTCTCGTACAGTGTATCGGCCCCC,"Exon (Mir128-2-201/Mir128-2-201, exon 1 of 1)",9,112065091,112185949,120859,2,Arpp21-202,67248,Arpp21-202;Arpp21-203;Arpp21-229;Arpp21-221;Arpp21-208;Arpp21-223;Arpp21-201;Arpp21-207;Arpp21-210,Arpp21;Arpp21;Arpp21;Arpp21;Arpp21;Arpp21;Arpp21;Arpp21;Arpp21,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,4,74100,ENSMUSG00000032503,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
465,cg05204560,-0.00000467,0.00000283,-1.648619705,0.100238591,loss,ns,0.00000192,0.00000482,0.39934882,0.689911181,pos,ns,0.0000293,0.001410786,0.020772776,0.983440278,pos,ns,0.007252009,-0.0000177,0.0000485,-0.364975685,0.715378425,neg,ns,0.943966176,Gm17934,Gm17934_Intergenic_downstream,3,6110736,6110785,6110736,6110737,50,-,CGATTGAGTGAAGCTATGCAGCTGGGGCCTCCAGTGAATAGACAGGAATA,Distal Intergenic,3,6137823,6138244,422,2,Gm17934-201,27508,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,6,100416136,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10397,cg20303044,-0.00000514,0.0000014,-3.664757808,0.000291141,loss,ns,-0.000000951,0.00000238,-0.399337817,0.689919279,neg,ns,0.0000106,0.000697548,0.015224171,0.987863131,pos,ns,0.005303223,-0.0000105,0.000024,-0.436046564,0.663106443,neg,ns,0.051095957,Ext1,Ext1_Exon,15,53345312,53345361,53345312,53345313,50,-,CGAGACAAGAGCCAGCTGAGAGCAGGATGAAATAGCGTTTTTTGGCCTGC,Promoter (<=1kb),15,53064038,53346159,282122,2,Ext1-201,798,Ext1-201;Ext1-203,Ext1;Ext1,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,16,14042,ENSMUSG00000061731,conserved gene and region,15,53344911,53345348,438,*,438,28,0.552511416,0.841325376,0.063926941,3.40E-16,CpGisland,TRUE,U1,Pr-A
21471,cg12612979,-0.0000389,0.00000822,-4.736185565,0.00000332,loss,ns,-0.00000558,0.000014,-0.399256348,0.689979238,neg,ns,-0.01234905,0.004092931,-3.017165429,0.002762932,neg,ns,2.558629854,0.000345706,0.000140756,2.456071257,0.014594814,pos,ns,0.777984206,Bcl11b,Bcl11b_Intron,12,107927523,107927572,107927523,107927524,50,+,CGAGTTATATAGGTTAGCTAATGCAGAGGGGACTCATTACTGACACACTA,"Intron (Bcl11b-201/Bcl11b, intron 3 of 3)",12,107910403,108003602,93200,2,Bcl11b-201,76030,Bcl11b-201;Bcl11b-202;Bcl11b-203,Bcl11b;Bcl11b;Bcl11b,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,39,58208,ENSMUSG00000048251,conserved gene and region,12,107927460,107927671,212,*,212,13,0.443396226,1.334624697,0.061320755,0.000000132,CpGisland,TRUE,U15,NS
2012,cg04010581,-0.0000504,0.0000121,-4.163319559,0.0000407,loss,ns,-0.00000821,0.0000206,-0.399255806,0.689979637,neg,ns,-0.015962525,0.006021561,-2.65089477,0.008440227,neg,ns,2.073645874,0.0000331,0.000207081,0.159728084,0.873199298,pos,ns,0.694802547,Prune2,Prune2_Intron,19,17102491,17102540,17102539,17102540,50,-,CAGCAGAGAGGCTTCATTAGACCCATCAGGATATCTGCCCATGAAGAACG,"Intron (Prune2-201/Prune2, intron 6 of 19)",19,16956118,17223932,267815,1,Prune2-201,146373,Prune2-201,Prune2,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,8,353211,ENSMUSG00000039126,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15978,cg22905405,0.0000585,0.000016,3.652221129,0.000305112,gain,ns,-0.0000109,0.0000272,-0.399205199,0.690016883,neg,ns,0.018109042,0.007969428,2.272313949,0.023752157,pos,ns,1.624296937,-0.000421317,0.000274068,-1.537272726,0.125246559,neg,ns,0.52953166,Tshz1,Tshz1_Intron,18,84082566,84082615,84082566,84082567,50,-,CGTTACGCCTGTCACAAATCCATCAGGTTTACAGATAATTAGGGGCCTGT,"Intron (Tshz1-201/Tshz1, intron 1 of 1)",18,84011627,84086404,74778,2,Tshz1-201,3789,Tshz1-201;Tshz1-202;Tshz1-203;Tshz1-204,Tshz1;Tshz1;Tshz1;Tshz1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,18,110796,ENSMUSG00000046982,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17617,cg23830504,-0.0000276,0.00000707,-3.901107325,0.000117461,loss,ns,-0.00000479,0.000012,-0.399150297,0.690057293,neg,ns,-0.004354498,0.003519099,-1.237390166,0.216878713,neg,ns,0.663783072,-0.00011944,0.000121022,-0.986930337,0.324446459,neg,ns,0.797894248,Elavl2,Elavl2_Exon,4,91260787,91260836,91260787,91260788,50,-,CGGTCCTGGATACCTTCTGTTTGGAGACTGGTACAGCTGGGAAAGGATGG,"Exon (Elavl2-204/Elavl2, exon 5 of 6)",4,91250763,91372034,121272,2,Elavl2-204,111198,Elavl2-204;Elavl2-201;Elavl2-207;Elavl2-208;Elavl2-202;Elavl2-209;Elavl2-206;Elavl2-203;Elavl2-205;Elavl2-215;Elavl2-216,Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,31,15569,ENSMUSG00000008489,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9237,cg02469672,0.0000507,0.00000966,5.247228773,0.000000287,gain,yes,-0.00000655,0.0000164,-0.39908482,0.690105486,neg,ns,0.007466363,0.004809824,1.552315186,0.121607108,pos,ns,0.915041039,0.000000953,0.000165409,0.005763801,0.995404885,pos,ns,0.879452448,Cadm1,Cadm1_Intron,9,47829172,47829221,47829172,47829173,50,-,CGCAGCTTTGAGCTCAAGGCATGTCTTAAAACAGTGCAACTCACTTCAAA,"Intron (Cadm1-204/Cadm1, intron 7 of 9)",9,47530173,47853385,323213,1,Cadm1-204,298999,Cadm1-204;Cadm1-209;Cadm1-206;Cadm1-202;Cadm1-203;Cadm1-211;Cadm1-201,Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,77,54725,ENSMUSG00000032076,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12126,cg04173950,-0.00000529,0.00000225,-2.346525719,0.019578732,loss,ns,0.00000153,0.00000383,0.399045097,0.690134724,pos,ns,0.002251858,0.001121902,2.007178787,0.045598413,pos,ns,1.341050269,-0.0000599,0.0000386,-1.552393776,0.121588314,neg,ns,0.95252193,Zfp618,Zfp618_Intron,4,63057919,63057968,63057967,63057968,50,-,TTTTAATTTCAGCTGTTTCTGCTTGGATTTATTTCCAATATTCCTGCTCG,"Intron (Zfp618-201/Zfp618, intron 2 of 11)",4,62965573,63115748,150176,1,Zfp618-201,92346,Zfp618-201;Zfp618-203;Zfp618-202,Zfp618;Zfp618;Zfp618,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,12,72701,ENSMUSG00000028358,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4193,cg27371466,-0.00000618,0.00000561,-1.101475252,0.271544346,loss,ns,0.0000038,0.00000953,0.399032041,0.690144334,pos,ns,-0.00246462,0.002790653,-0.883169743,0.377828932,neg,ns,0.42270479,-0.000131621,0.000096,-1.371478884,0.171217582,neg,ns,0.774427061,Grm4,Grm4_threeUTR,17,27434680,27434729,27434728,27434729,50,+,GACCATGAGCAGCATGCTGTAGCCCAGCAGGCAGATGAGCGACAGGTCCG,3' UTR,17,27422387,27503304,80918,2,Grm4-202,68575,Grm4-202;Grm4-201;Grm4-206;Grm4-207;Grm4-205;Grm4-208,Grm4;Grm4;Grm4;Grm4;Grm4;Grm4,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,5,268934,ENSMUSG00000063239,conserved gene and region,17,27434719,27435170,452,*,452,34,0.626106195,0.77686786,0.075221239,7.56E-22,CpGisland,TRUE,U15,NS
15297,cg20590509,-0.0000123,0.00000344,-3.580862095,0.000397418,loss,ns,-0.00000233,0.00000585,-0.398920877,0.690226158,neg,ns,-0.003314945,0.001713975,-1.93406884,0.054014606,neg,ns,1.267488787,0.0000367,0.0000589,0.622719308,0.533926798,pos,ns,0.946801182,Actn1,Actn1_Exon,12,80205027,80205076,80205075,80205076,50,-,TTGGAGATCTTGTGCACTCTCATCTTGCCTCGCTCTGGCTTGGCCAAGCG,"Exon (Actn1-201/Actn1, exon 3 of 21)",12,80167547,80260371,92825,2,Actn1-201,55295,Actn1-201;Actn1-202;Actn1-204;Actn1-207,Actn1;Actn1;Actn1;Actn1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,10,109711,ENSMUSG00000015143,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22028,cg04584281,-0.00000414,0.00000152,-2.718476797,0.006927553,loss,ns,-0.00000103,0.00000259,-0.398784884,0.690326264,neg,ns,-0.002219908,0.000758005,-2.928618642,0.003657065,neg,ns,2.436867359,0.0000357,0.0000261,1.371016353,0.171361577,pos,ns,0.965020875,Elavl4,Elavl4_Exon,4,110209747,110209796,110209747,110209748,50,-,CGCCATAGGCCATATTAAGCAAATTGTCCAGCCTGCAAAGAGAAGGAGGG,"Exon (Elavl4-204/Elavl4, exon 6 of 7)",4,110203722,110287527,83806,2,Elavl4-204,77731,Elavl4-204;Elavl4-201;Elavl4-203;Elavl4-202;Elavl4-205;Elavl4-206;Elavl4-207;Elavl4-211;Elavl4-208,Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,36,15572,ENSMUSG00000028546,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4637,cg20963367,-0.00000647,0.00000158,-4.08986381,0.0000551,loss,ns,-0.00000107,0.00000269,-0.398702,0.690387278,neg,ns,-0.000912314,0.000787271,-1.158831251,0.247416864,neg,ns,0.606570703,0.0000294,0.0000271,1.08533741,0.278615529,pos,ns,0.0478511,Hes1,Hes1_Intron,16,30009046,30009095,30009094,30009095,50,+,AGGTGAGCGGAGCAGCGTTTTCCCACAGTCTGGGGCGGTGACACATGGCG,"Intron (4632428C04Rik-201/4632428C04Rik-201, intron 1 of 2)",16,30064384,30065580,1197,1,Hes1-202,-55289,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,20,15205,ENSMUSG00000022528,mapped to different genes,16,30008827,30009291,465,*,465,53,0.746236559,0.835367094,0.113978495,9.13E-44,CpGisland,TRUE,U1,Pr-A
19379,cg09610373,-0.0000191,0.00000872,-2.19470579,0.028926157,loss,ns,-0.00000591,0.0000148,-0.398606199,0.690457804,neg,ns,0.002110363,0.004341044,0.486141783,0.62721011,pos,ns,0.20258695,-0.0001993,0.000149288,-1.335000057,0.182855877,neg,ns,0.784557788,Efnb1,Efnb1_Exon,X,99145488,99145537,99145488,99145489,50,+,CGCTTTACCATCAAGTTCCAGGAGTTCAGCCCCAACTACATGGGCCTGGA,"Exon (Efnb1-201/Efnb1, exon 2 of 5)",20,99136130,99148991,12862,1,Efnb1-201,9358,Efnb1-201;Efnb1-202,Efnb1;Efnb1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,14,13641,ENSMUSG00000031217,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24568,cg21292321,0.00000501,0.00000652,0.76863038,0.442697925,gain,ns,0.00000441,0.0000111,0.398542942,0.690504374,pos,ns,-0.007595929,0.003243517,-2.341880456,0.019819696,neg,ns,1.702903012,0.000231786,0.000111544,2.077971665,0.038534604,pos,ns,0.756744937,Maz,Maz_Exon,7,127023597,127023646,127023645,127023646,50,-,GGTCTTGCAGTGCACGCTGCACAGCTTGCACAGGATGCGGTCAGCCCGCG,"Exon (Maz-203/Maz, exon 5 of 6)",7,127022130,127026526,4397,2,Maz-203,2880,Gm42742-201;Gm42742-203;Gm42742-204;Gm42742-202;Kif22-202;Kif22-201;Kif22-205;Maz-203;Maz-201;Maz-204;Maz-202;Maz-206;Maz-205;Prrt2-201;Prrt2-202;Prrt2-204;Prrt2-203;Prrt2-205;Prrt2-206;Prrt2-207,Gm42742;Gm42742;Gm42742;Gm42742;Kif22;Kif22;Kif22;Maz;Maz;Maz;Maz;Maz;Maz;Prrt2;Prrt2;Prrt2;Prrt2;Prrt2;Prrt2;Prrt2,0;0;0;0;5311;18825;4470;0;0;0;0;0;0;0;0;-3695;-4002;-2641;-2460;-3242,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,16,17,17188,ENSMUSG00000030678,conserved gene and region,7,127023537,127023683,147,*,147,10,0.700680272,0.560640732,0.068027211,0.00000233,CpGisland,TRUE,U12,Tr-I
15166,cg09113585,0.0000189,0.00000436,4.333295915,0.0000199,gain,ns,-0.00000295,0.0000074,-0.398532486,0.690512071,neg,ns,0.006342582,0.00216754,2.926166215,0.003685226,pos,ns,2.433535889,-0.000131141,0.0000745,-1.759296837,0.079513547,neg,ns,0.116453928,Polg,Polg_Intergenic_upstream,7,79497847,79497896,79497847,79497848,50,+,CGGGGTGACCTGAACAAAGAATTTGGAAGTAGTTAAACTGCAGAACACGT,Distal Intergenic,7,79446231,79466362,20132,2,Polg-201,-31485,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,16,18975,ENSMUSG00000039176,mapped to different genes,7,79497714,79497848,135,*,135,13,0.688888889,0.819327731,0.096296296,5.13E-10,CpGisland,TRUE,U13,Hc-P
8280,cg24396269,0.0000902,0.0000153,5.899382575,9.55E-09,gain,yes,-0.0000103,0.000026,-0.398516297,0.690523989,neg,ns,0.022202381,0.007608697,2.918026519,0.00378012,pos,ns,2.422494431,-0.000703508,0.000261662,-2.688610528,0.007562985,neg,ns,0.243244241,Ebf1,Ebf1_Intron,11,44933211,44933260,44933259,44933260,50,+,AAAGAAAACATATTGACTACAGCCAAGCAAATAACAGACCATAACCAACG,"Intron (Ebf1-203/Ebf1, intron 10 of 15)",11,44617317,45004995,387679,1,Ebf1-203,315894,Ebf1-203;Ebf1-202;Ebf1-201;Ebf1-206,Ebf1;Ebf1;Ebf1;Ebf1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,80,13591,ENSMUSG00000057098,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6531,cg12980723,-0.0000314,0.0000112,-2.800424097,0.005423971,loss,ns,0.00000759,0.000019,0.398476262,0.690553464,pos,ns,0.011027436,0.005580429,1.976091237,0.049030769,pos,ns,1.309531297,-0.000194217,0.00019191,-1.012018332,0.31231852,neg,ns,0.708535595,Zfp536,Zfp536_Intron,7,37628699,37628748,37628747,37628748,50,-,ATGGAAGTCTTTACCACAATCAATACCATAACAGCTTCTTGAAATGAACG,"Intron (Zfp536-202/Zfp536, intron 4 of 6)",7,37479104,37769624,290521,2,Zfp536-202,140876,Zfp536-202;Zfp536-201;Zfp536-203;Zfp536-206;Zfp536-209;Zfp536-208,Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,73,112,243937,ENSMUSG00000043456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24479,cg16097144,0.00000571,0.00000127,4.482385318,0.0000104,gain,ns,-0.000000861,0.00000216,-0.398035378,0.690878081,neg,ns,-0.001053246,0.000633546,-1.662461787,0.097430954,neg,ns,1.011303045,0.0000499,0.0000218,2.288532312,0.022779111,pos,ns,0.967272422,Atxn2l,Atxn2l_threeUTR,7,126492588,126492637,126492636,126492637,50,+,GGCTTCTGCCCACCCTACATACTTCACAGACAGGTGCAGGTCGGCGGGCG,3' UTR,7,126491708,126503437,11730,2,Atxn2l-201,10800,Atxn2l-201;Atxn2l-203;Atxn2l-206;Atxn2l-205;Atxn2l-202;Tufm-201;Tufm-202;Tufm-203;Tufm-204;Tufm-205;Tufm-206,Atxn2l;Atxn2l;Atxn2l;Atxn2l;Atxn2l;Tufm;Tufm;Tufm;Tufm;Tufm;Tufm,0;0;0;0;0;5227;5210;4959;3974;3902;3217,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,8,13,233871,ENSMUSG00000032637,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12763,cg00902440,0.0000139,0.00000381,3.659150747,0.000297313,gain,ns,0.00000258,0.00000647,0.398003083,0.690901861,pos,ns,0.004913193,0.001896206,2.591065191,0.010020387,pos,ns,1.99911552,-0.0000748,0.0000652,-1.147362269,0.252116644,neg,ns,0.127838814,Phox2b,Phox2b_fiveUTR,5,67098899,67098948,67098899,67098900,50,+,CGTAGGCAGAGGAATTGAGGTAAGAATATTCCATTTTATACATTGAAAAG,Promoter (<=1kb),5,67094399,67099301,4903,2,Phox2b-201,353,Phox2b-201;Phox2b-202,Phox2b;Phox2b,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,28,18935,ENSMUSG00000012520,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
14629,cg00316483,-0.00000213,0.000000921,-2.315154818,0.02125722,loss,ns,-0.000000622,0.00000156,-0.397999692,0.690904358,neg,ns,0.000077,0.00045816,0.168040509,0.866660986,pos,ns,0.062150753,-0.0000232,0.0000158,-1.475553855,0.141078648,neg,ns,0.01979409,Max,Max_fiveUTR,12,76962004,76962053,76962004,76962005,50,-,CGATGTCATCGTTATCGCTCATTTCCTACGGCCCAGGGAGCGGCCACTGC,Promoter (<=1kb),12,76938191,76962025,23835,2,Max-205,0,Max-202;Max-201;Max-205;Max-204,Max;Max;Max;Max,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,5,17187,ENSMUSG00000059436,conserved gene but different region,12,76961656,76962309,654,*,654,62,0.678899083,0.824096092,0.094801223,1.05E-45,CpGisland,TRUE,U1,Pr-A
18390,cg20133049,-0.00000392,0.00000341,-1.150034869,0.251015911,loss,ns,0.00000231,0.00000579,0.397965778,0.690929331,pos,ns,-0.000826021,0.001697123,-0.486718543,0.626801735,neg,ns,0.20286981,0.0000643,0.0000584,1.102039558,0.271299336,pos,ns,0.864567705,Pde8b,Pde8b_Exon,13,95085185,95085234,95085233,95085234,50,+,ATCACTGGGGTGATCTTCACGTGCTGTTGGATGCTGTCCCCGGATTTCCG,"Exon (Pde8b-207/Pde8b, exon 9 of 22)",13,95024454,95250336,225883,2,Pde8b-210,165102,Pde8b-210;Pde8b-208;Pde8b-207;Pde8b-201;Pde8b-202;Pde8b-214;Pde8b-204;Pde8b-206;Pde8b-209,Pde8b;Pde8b;Pde8b;Pde8b;Pde8b;Pde8b;Pde8b;Pde8b;Pde8b,0;0;0;0;0;0;0;0;137832,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,218461,ENSMUSG00000021684,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13139,cg15647667,-0.0000332,0.00000956,-3.469493536,0.00059531,loss,ns,0.00000646,0.0000162,0.397932358,0.690953941,pos,ns,-0.002362616,0.00475712,-0.496648375,0.619789029,neg,ns,0.207756116,0.000225601,0.000163597,1.379004656,0.168887451,pos,ns,0.875673216,Gm7627,Gm7627_Intergenic_downstream,7,69555076,69555125,69555124,69555125,50,-,TACAGGCACTTTACCTCTTCTATTTCCATGATAATAGCAGATTGGAGTCG,Distal Intergenic,7,69605842,69606840,999,2,Gm7627-201,51764,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,11,665410,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
753,cg14839134,-0.000000624,0.00000344,-0.181605107,0.856011326,loss,ns,0.00000232,0.00000584,0.397522064,0.691256098,pos,ns,0.002118511,0.001710694,1.238392487,0.216507525,pos,ns,0.664527005,-0.0000819,0.0000588,-1.392697309,0.164709372,neg,ns,0.929836481,Rab2a,Rab2a_Intron,4,8577445,8577494,8577493,8577494,50,-,ATCTGCATCCTTGGCCTTCCAACAACCTTTACACCAGCAGATGGTGGGCG,"Intron (Rab2a-201/Rab2a, intron 3 of 7)",4,8535644,8607778,72135,1,Rab2a-201,41801,Rab2a-201,Rab2a,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,59021,ENSMUSG00000047187,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1516,cg21710060,-0.00000291,0.0000029,-1.001946997,0.317150629,loss,ns,-0.00000196,0.00000493,-0.397481259,0.691286152,neg,ns,0.00085552,0.001445586,0.591815141,0.554405728,pos,ns,0.256172291,-0.00000921,0.0000497,-0.185258903,0.85314712,neg,ns,0.926037771,Grk1,Grk1_fiveUTR,8,13405117,13405166,13405165,13405166,50,+,GATGGATTTCGGGTCTTTGGAGACCGTGGTGGCCAACTCTGCCTTCATCG,Promoter (<=1kb),8,13405081,13421945,16865,1,Grk1-201,36,Grk1-201;Grk1-202;Grk1-203,Grk1;Grk1;Grk1,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,1,24013,ENSMUSG00000031450,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7600,cg19442410,0.000000937,0.00000236,0.397179055,0.691508742,gain,ns,0.00000159,0.00000401,0.397464142,0.691298759,pos,ns,0.003271113,0.001174609,2.784853198,0.005684582,pos,ns,2.245301429,-0.000142213,0.0000404,-3.520596214,0.000495187,neg,ns,0.938419083,Nol7,Nol7_threeUTR,13,43402810,43402859,43402810,43402811,50,-,CGGTAAATTGACTAAATATTTGGTTTTTATATAAATAAAGGTCATAACCA,3' UTR,13,43398390,43402861,4472,1,Nol7-201,4420,Nol7-201;Nol7-205;Nol7-202;Nol7-203;Nol7-204;Nol7-207;Nol7-206;Ranbp9-201;Ranbp9-204;Ranbp9-205;Ranbp9-208,Nol7;Nol7;Nol7;Nol7;Nol7;Nol7;Nol7;Ranbp9;Ranbp9;Ranbp9;Ranbp9,0;4418;4175;2125;1817;1763;0;0;0;9625;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,1,70078,ENSMUSG00000063200,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6630,cg06787269,-0.0000491,0.00000946,-5.193092738,0.000000375,loss,yes,-0.00000639,0.0000161,-0.397448483,0.691310292,neg,ns,-0.014108913,0.004707304,-2.9972386,0.002944574,neg,ns,2.530977536,0.000393248,0.000161884,2.429198938,0.015700233,pos,ns,0.866631135,Dennd1a,Dennd1a_Intron,2,37842259,37842308,37842307,37842308,50,+,TAAATAGAGTGTAGACTGTATGCAAATGTGTTTGTCACTTTGACAGCACG,"Intron (Dennd1a-201/Dennd1a, intron 19 of 21)",2,37798991,38287375,488385,2,Dennd1a-201,445067,Dennd1a-201;Dennd1a-206;Dennd1a-207,Dennd1a;Dennd1a;Dennd1a,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,46,227801,ENSMUSG00000035392,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4355,cg24942186,0.0000846,0.0000151,5.589301552,0.00000005,gain,yes,-0.0000102,0.0000257,-0.397421961,0.691329826,neg,ns,0.012011118,0.007536804,1.59366204,0.112030793,pos,ns,0.95066259,-0.000344434,0.00025919,-1.328886702,0.184862629,neg,ns,0.059826191,Wnt5a,Wnt5a_fiveUTR,14,28505700,28505749,28505748,28505749,50,+,TTTGCACAATCACGCCCACATTTGGGGTTGGAAAGCCCTAATTACCGCCG,Promoter (<=1kb),14,28504750,28527448,22699,1,Wnt5a-201,950,Wnt5a-201;Wnt5a-204;Wnt5a-206,Wnt5a;Wnt5a;Wnt5a,0;-151;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,8,22418,ENSMUSG00000021994,conserved gene and region,14,28505712,28506138,427,*,427,53,0.683840749,1.093760572,0.12412178,5.59E-46,CpGisland,TRUE,U3,Pr-B
18053,cg26329364,-0.000000424,0.00000119,-0.355840088,0.722202351,loss,ns,-0.000000805,0.00000203,-0.397407293,0.691340629,neg,ns,0.00097434,0.00059347,1.641769279,0.101651868,pos,ns,0.992884635,-0.0000531,0.0000204,-2.601882943,0.009716423,neg,ns,0.967217974,Pphln1,Pphln1_Exon,15,93420446,93420495,93420446,93420447,50,+,CGCAGTTTTTCTCATGATCGAAGAAGTGGTCCACCTCACAGAGGAGTATG,"Exon (Pphln1-201/Pphln1, exon 3 of 10)",15,93398350,93489308,90959,1,Pphln1-203,22096,Pphln1-203;Pphln1-201;Pphln1-202;Pphln1-205;Pphln1-204;Pphln1-207,Pphln1;Pphln1;Pphln1;Pphln1;Pphln1;Pphln1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,223828,ENSMUSG00000036167,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15968,cg24272076,-0.00000501,0.0000025,-2.005007808,0.045831318,loss,ns,-0.00000169,0.00000425,-0.397377982,0.691362218,neg,ns,-0.000617309,0.001243814,-0.496303386,0.620032093,neg,ns,0.207585831,-0.0000513,0.0000428,-1.198479174,0.231645928,neg,ns,0.012462229,Rfx1,Rfx1_fiveUTR,8,84066832,84066881,84066880,84066881,50,-,CAACAGTTGCCCCGGTGAGGGAAACGGAGGCGCCATAGCCACGGTAGTCG,Promoter (<=1kb),8,84066834,84096459,29626,1,Rfx1-204,0,Gm10643-201;Rfx1-204;Rfx1-202;Rfx1-203;Rfx1-201,Gm10643;Rfx1;Rfx1;Rfx1;Rfx1,-1695;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,4,19724,ENSMUSG00000031706,conserved gene and region,8,84066476,84067467,992,*,992,109,0.6875,0.938146924,0.109879032,1.93E-87,CpGisland,TRUE,U1,Pr-A
9562,cg02246955,0.0000187,0.00000342,5.477151198,8.95E-08,gain,yes,0.00000231,0.0000058,0.397322661,0.691402965,pos,ns,0.006144227,0.001700637,3.612897407,0.000353135,pos,ns,3.452059383,-0.000154966,0.0000585,-2.649673283,0.008470108,neg,ns,0.088694384,Foxg1,Foxg1_Promoter,12,49379761,49379810,49379809,49379810,50,-,CCTAATCGTATAACCTGTAACCAAAACCCACAGAACGAGGATACAACACG,Promoter (2-3kb),12,49382660,49384364,1705,1,Foxg1-202,-2899,Foxg1-202;Foxg1-203;Foxg1-204;Foxg1-201,Foxg1;Foxg1;Foxg1;Foxg1,0;-2990;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,11,27,15228,ENSMUSG00000020950,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
2711,cg25463849,-0.00000471,0.00000298,-1.57987977,0.115154176,loss,ns,-0.00000201,0.00000507,-0.397090134,0.691574243,neg,ns,-0.001072872,0.001484949,-0.722497257,0.470533497,neg,ns,0.327409454,-0.0000819,0.0000511,-1.604383205,0.109647867,neg,ns,0.033942493,Kat6b,Kat6b_fiveUTR,14,21500892,21500941,21500940,21500941,50,-,GTCATGTCGGATTCATGTCAACGACAACAACAGGGGGACACAAAATGGCG,5' UTR,14,21481434,21517111,35678,1,Kat6b-209,19458,Kat6b-209;Kat6b-211;Kat6b-206;Kat6b-204;Kat6b-201;Kat6b-207;Kat6b-202;Kat6b-208;Kat6b-212;Kat6b-210,Kat6b;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,7,21,54169,ENSMUSG00000021767,conserved gene and region,14,21500899,21501345,447,*,447,45,0.727069351,0.780983072,0.100671141,1.37E-34,CpGisland,TRUE,U1,Pr-A
12459,cg08875759,0.000000507,0.00000223,0.227485096,0.820196513,gain,ns,-0.0000015,0.00000379,-0.397082351,0.691579976,neg,ns,0.00039577,0.001108879,0.356909904,0.72140208,pos,ns,0.14182261,-0.000053,0.0000381,-1.390033105,0.16551612,neg,ns,0.939592304,Onecut2,Onecut2_threeUTR,18,64394141,64394190,64394189,64394190,50,+,TTAATCGTGTTGATGACACCAAAGATACCAAAGATTTCTTTCTCTGTGCG,3' UTR,18,64340020,64400987,60968,1,Onecut2-201,54121,Onecut2-201,Onecut2,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,19,225631,ENSMUSG00000045991,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14992,cg26452091,0.0000248,0.00000564,4.390428324,0.0000155,gain,ns,0.00000381,0.00000959,0.397022041,0.691624403,pos,ns,0.001366295,0.002809507,0.486311261,0.627090099,pos,ns,0.202670056,0.000138181,0.0000966,1.430163901,0.153677088,pos,ns,0.149726581,Pou4f2,Pou4f2_Intergenic_downstream,8,78420501,78420550,78420549,78420550,50,-,GCTGTCTCATTCCTGTTATTTACATCTGTCTTTAGCATTCTAATTACTCG,Distal Intergenic,8,78433010,78436645,3636,2,Pou4f2-201,16144,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,23,18997,ENSMUSG00000031688,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19915,cg05639775,0.0000855,0.0000136,6.306021646,9.85E-10,gain,yes,0.00000914,0.000023,0.396886579,0.691724193,pos,ns,0.037218882,0.006749369,5.514423999,7.38E-08,pos,ns,7.131853256,-0.000931502,0.00023211,-4.013187265,0.0000752,neg,ns,0.659769442,Ogt,Ogt_Exon,X,101653477,101653526,101653477,101653478,50,-,CGGTTTAGGCTGAGACATTGCGCCTGCCTTAGGTTGCTGACTTCTTTATT,"Exon (Ogt-204/Ogt, exon 4 of 4)",20,101640060,101682940,42881,1,Ogt-202,13417,Ogt-202;Ogt-206;Ogt-201;Ogt-205;Ogt-204;Ogt-207;Ogt-203,Ogt;Ogt;Ogt;Ogt;Ogt;Ogt;Ogt,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,32,33,108155,ENSMUSG00000034160,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27719,cg20255004,6.98E-08,0.00000103,0.067542902,0.946193051,gain,ns,0.000000697,0.00000176,0.396755751,0.691820575,pos,ns,0.000767175,0.000514497,1.491117123,0.136947583,pos,ns,0.863445629,-0.0000162,0.0000177,-0.9134,0.361742038,neg,ns,0.968057948,Cdh4,Cdh4_Intron,2,179520438,179520487,179520438,179520439,50,-,CGTATGTGAATATTTTAATTAGGATTGTAACAAGCTATTGAGAAAGTTTG,"Intron (Cdh4-201/Cdh4, intron 2 of 15)",2,179442431,179899373,456943,1,Cdh4-201,78007,Cdh4-201;Cdh4-203;Cdh4-204,Cdh4;Cdh4;Cdh4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,12561,ENSMUSG00000000305,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10888,cg27205180,-0.0000161,0.00000624,-2.576892817,0.010431478,loss,ns,-0.0000042,0.0000106,-0.396652643,0.691896539,neg,ns,-0.004880768,0.003105131,-1.571839439,0.117007845,neg,ns,0.931785018,-0.000062,0.000106785,-0.580317582,0.56212205,neg,ns,0.826176681,Nbea,Nbea_Intron,3,55742813,55742862,55742813,55742814,50,+,CGGCTGTCCCCATCCTGTCAGGCATGTCAGGAAATGACAAGCACTGGGGA,"Intron (Nbea-201/Nbea, intron 41 of 57)",3,55625195,56183701,558507,2,Nbea-201,440839,Nbea-201;Nbea-208,Nbea;Nbea,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,14,26422,ENSMUSG00000027799,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14725,cg07232817,-0.000028,0.00000673,-4.160516926,0.0000412,loss,ns,-0.00000453,0.0000114,-0.396391516,0.692088936,neg,ns,-0.001198796,0.003349609,-0.357891375,0.720668165,neg,ns,0.142264662,-0.000197249,0.000115193,-1.712334263,0.087835085,neg,ns,0.88167985,Rnf165,Rnf165_threeUTR,18,77462230,77462279,77462278,77462279,50,-,CTACGTCAAATGGCTCAGAAGGCAAAGTTTGGCTGCAAGGGCTATGGCCG,3' UTR,18,77456110,77565136,109027,2,Rnf165-201,102857,Rnf165-201;Rnf165-202;Rnf165-207;Rnf165-204,Rnf165;Rnf165;Rnf165;Rnf165,0;0;4869;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,10,21,225743,ENSMUSG00000025427,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27320,cg11997199,0.0000012,0.00000343,0.350036843,0.726548748,gain,ns,-0.00000231,0.00000582,-0.39624924,0.692193772,neg,ns,-0.002499515,0.001705449,-1.465605043,0.143769442,neg,ns,0.842333411,0.0000653,0.0000587,1.113236635,0.266469267,pos,ns,0.901664405,Zfp335,Zfp335_Exon,2,164901460,164901509,164901460,164901461,50,+,CGGTAGACACTGGTGTAGCTGCACTCGTCACACTTGTAGGGCTTGCTGCC,"Exon (Zfp335-201/Zfp335, exon 10 of 28)",2,164891882,164911757,19876,2,Zfp335-201,10248,Zfp335-201;Zfp335-203;Zfp335-202,Zfp335;Zfp335;Zfp335,0;0;6156,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,329559,ENSMUSG00000039834,conserved gene and region,2,164901359,164901513,155,*,155,11,0.612903226,0.765947889,0.070967742,0.000000389,CpGisland,TRUE,U10,Tr-S
17009,cg11108563,0.00000386,0.00000526,0.73328312,0.463939917,gain,ns,-0.00000354,0.00000893,-0.39617201,0.692250682,neg,ns,0.001345509,0.002617078,0.514126563,0.607529801,pos,ns,0.216432414,0.00000662,0.00009,0.073509602,0.941448012,pos,ns,0.882796697,Zfp423,Zfp423_Intron,8,87859194,87859243,87859242,87859243,50,+,TTCTTTAATCTCACTTGAGGCTTCAAGCTGTTGCTATGTCCAATTACCCG,"Intron (Zfp423-202/Zfp423, intron 3 of 7)",8,87661810,87959595,297786,2,Zfp423-202,100352,Zfp423-202;Zfp423-201;Zfp423-207;Zfp423-205;Zfp423-204,Zfp423;Zfp423;Zfp423;Zfp423;Zfp423,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,42,53,94187,ENSMUSG00000045333,conserved gene but different region,8,87859242,87859455,214,*,214,14,0.551401869,0.876792508,0.065420561,1.65E-08,CpGisland,TRUE,U15,NS
7006,cg06102392,-0.0000136,0.00000528,-2.574187131,0.010511653,loss,ns,0.00000355,0.00000897,0.396089346,0.692311598,pos,ns,0.0000201,0.002629335,0.00763324,0.993914524,pos,ns,0.002650963,0.0000778,0.0000904,0.860783983,0.390022287,pos,ns,0.918111834,Gm7382,Gm7382_Promoter,15,40533811,40533860,40533811,40533812,50,+,CGGCACATGCCTGAATTGCAAAAGAATCCGCTCTTCAATTGGAACTTATT,Promoter (3-4kb),15,40537321,40538425,1105,1,Gm7382-201,-3461,Gm7382-201,Gm7382,-3461,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,17,22,664872,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5208,cg14130066,-0.00000977,0.00000343,-2.844852996,0.004738849,loss,ns,0.00000231,0.00000584,0.3959908,0.69238422,pos,ns,0.005143971,0.001709487,3.009072218,0.002835428,pos,ns,2.547381428,-0.0000403,0.0000588,-0.684786278,0.493990461,neg,ns,0.946680865,Pten,Pten_Exon,19,32800031,32800080,32800031,32800032,50,+,CGGGGCAAATTTTTAAAGGCACAAGAGGCCCTAGATTTCTATGGGGAAGT,"Exon (Pten-201/Pten, exon 5 of 9)",19,32757497,32826160,68664,1,Pten-201,42534,Pten-201;Pten-202,Pten;Pten,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,6,19211,ENSMUSG00000013663,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15293,cg14817774,-0.0000143,0.00000308,-4.644273008,0.00000505,loss,ns,-0.00000207,0.00000522,-0.395918235,0.692437698,neg,ns,-0.001470818,0.001530717,-0.960868954,0.337366915,neg,ns,0.47189751,0.0000207,0.0000526,0.392810531,0.694729396,pos,ns,0.955957604,Srsf7,Srsf7_threeUTR,17,80204884,80204933,80204884,80204885,50,+,CGATCACCGTCTCAAATTTTCTGCCCTTTAAAGAATAAGGTGAAGCTAGG,3' UTR,17,80200080,80207305,7226,2,Srsf7-201,2372,Srsf7-201;Srsf7-202;Srsf7-203;Srsf7-205;Srsf7-206;Srsf7-207;Srsf7-208;Srsf7-204;Ttc39d-202,Srsf7;Srsf7;Srsf7;Srsf7;Srsf7;Srsf7;Srsf7;Srsf7;Ttc39d,0;0;0;0;0;0;0;0;-2527,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,7,8,225027,ENSMUSG00000024097,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13490,cg01476234,-0.0000391,0.00000776,-5.042278355,0.000000784,loss,yes,0.00000522,0.0000132,0.395843634,0.692492677,pos,ns,-0.005575684,0.003860902,-1.444140434,0.149709366,neg,ns,0.82475103,0.0000352,0.000132776,0.265153639,0.791067335,pos,ns,0.890173124,Adamts16,Adamts16_Exon,13,70793078,70793127,70793126,70793127,50,-,AGGGCTCATTCTTCCAGGAACATATATCCAGACCAGTCAGTAAGATGGCG,"Exon (Adamts16-201/Adamts16, exon 7 of 23)",13,70727802,70841811,114010,2,Adamts16-201,48684,Adamts16-201;Adamts16-203;Adamts16-202,Adamts16;Adamts16;Adamts16,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,7,271127,ENSMUSG00000049538,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10476,cg08092317,-0.00000869,0.00000337,-2.581757058,0.010288714,loss,ns,0.00000226,0.00000572,0.395831774,0.692501418,pos,ns,-0.001357656,0.001675042,-0.810520499,0.41826287,neg,ns,0.378550686,-0.0000588,0.0000576,-1.021491013,0.307818353,neg,ns,0.939521354,Npas3,Npas3_Intron,12,53802576,53802625,53802576,53802577,50,+,CGCTTTGGGCATTTTTGTATTTCAAATTTGCAAGTTGTCAGTTTGAAAAA,"Intron (Npas3-204/Npas3, intron 3 of 10)",12,53248157,54069532,821376,1,Npas3-204,554419,Npas3-204;Npas3-201;Npas3-203,Npas3;Npas3;Npas3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,83,103,27386,ENSMUSG00000021010,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6730,cg19283046,-0.0000451,0.00000722,-6.256089908,1.31E-09,loss,yes,0.00000485,0.0000123,0.395775773,0.692542691,pos,ns,-0.002685105,0.003591225,-0.74768512,0.455216896,neg,ns,0.341781627,-0.00000578,0.000123502,-0.046825434,0.962682509,neg,ns,0.630402277,Pcdh1,Pcdh1_Promoter,18,38215075,38215124,38215123,38215124,50,-,CCTGTTTTCATTACTGTTTTAACTCTTTTTTTAACCTTGTTTTTCTCTCG,Promoter (3-4kb),18,38185914,38212053,26140,2,Pcdh1-203,-3071,Pcdh1-203;Pcdh1-202;Pcdh1-205,Pcdh1;Pcdh1;Pcdh1,0;-3105;-4521,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,3,17,75599,ENSMUSG00000051375,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8359,cg13085897,-0.0000437,0.00000855,-5.107113403,0.000000572,loss,yes,0.00000575,0.0000145,0.395671499,0.692619544,pos,ns,-0.010546143,0.004257714,-2.476949625,0.013784137,neg,ns,1.860620417,0.000244326,0.000146422,1.6686383,0.0961987,pos,ns,0.836073201,Zeb2,Zeb2_Intron,2,45047691,45047740,45047691,45047692,50,+,CGGAAGGGAAAACCTGCCGCTTCAATCCGCAGGTCTGTCAGATTGCTAGA,"Intron (Zeb2-212/Zeb2, intron 3 of 10)",2,44983632,45117395,133764,2,Zeb2-212,69655,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-218;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24721,cg07680348,-0.0000191,0.0000143,-1.34221084,0.180509795,loss,ns,-0.00000958,0.0000242,-0.395644282,0.692639604,neg,ns,-0.000901073,0.00709242,-0.127047273,0.898985351,neg,ns,0.046247385,0.0000412,0.000243908,0.1688749,0.866005177,pos,ns,0.737788927,Ap1ar,Ap1ar_Exon,3,127815609,127815658,127815609,127815610,50,+,CGCTGCTTTGCTGCCCTGGCTGCTTCACGCTGTGCAGCGTATAAAGCTTC,"Exon (Ap1ar-201/Ap1ar, exon 6 of 10)",3,127807007,127837523,30517,2,Ap1ar-210,21865,Ap1ar-210;Ap1ar-201;Ap1ar-204;Ap1ar-208;Ap1ar-206;Ap1ar-203;Tifa-204,Ap1ar;Ap1ar;Ap1ar;Ap1ar;Ap1ar;Ap1ar;Tifa,0;0;-2922;0;0;9840;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,211556,ENSMUSG00000074238,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22902,cg25643895,-0.000000312,0.000000474,-0.658629321,0.510622701,loss,ns,-0.000000318,0.000000805,-0.395549525,0.692709446,neg,ns,0.000413384,0.000235789,1.75319933,0.080556184,pos,ns,1.093901113,-0.0000213,0.00000811,-2.626552403,0.009053925,neg,ns,0.010149923,Lrrc41,Lrrc41_Exon,4,116075452,116075501,116075500,116075501,50,-,GTGAGGTAGCGGCGGCAACGACCATGGAGGCCACGTCCCGGGAGGCGGCG,Promoter (<=1kb),4,116075463,116083056,7594,1,Lrrc41-206,0,Lrrc41-201;Lrrc41-206;Lrrc41-202;Lrrc41-204;Lrrc41-205;Uqcrh-201;Uqcrh-204;Uqcrh-202;Uqcrh-203,Lrrc41;Lrrc41;Lrrc41;Lrrc41;Lrrc41;Uqcrh;Uqcrh;Uqcrh;Uqcrh,0;0;0;-1384;-3915;-421;-418;-381;-393,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,9,230654,ENSMUSG00000028703,conserved gene and region,4,116075337,116076722,1386,*,1386,139,0.714285714,0.81376508,0.1002886,3.09E-105,CpGisland,TRUE,U1,Pr-A
8198,cg14974751,-0.000000648,0.00000254,-0.255246042,0.798702333,loss,ns,0.00000171,0.00000431,0.395409621,0.692812569,pos,ns,0.003415437,0.001264147,2.701771379,0.007276771,pos,ns,2.138061297,-0.00014748,0.0000435,-3.392378878,0.000782786,neg,ns,0.942986275,Ebf1,Ebf1_Intron,11,44845527,44845576,44845575,44845576,50,+,CGACATGTTACATTAATTTATAGGCACTGAGTGACTTATTAAAAGTGACG,"Intron (Ebf1-203/Ebf1, intron 6 of 15)",11,44617317,45004995,387679,1,Ebf1-203,228210,Ebf1-203;Ebf1-202;Ebf1-201,Ebf1;Ebf1;Ebf1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,80,13591,ENSMUSG00000057098,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4590,cg23224171,0.000000807,0.0000025,0.322706369,0.747135171,gain,ns,0.00000168,0.00000425,0.395352335,0.692854796,pos,ns,0.002323409,0.001244205,1.867384286,0.06279152,pos,ns,1.202099004,-0.0000435,0.0000428,-1.016126823,0.310361386,neg,ns,0.913152029,Odf2,Odf2_Exon,2,29893489,29893538,29893489,29893490,50,+,CGGAGTGTCCGGGTGAAAACCAAGGTACCTTGGATGCCCCCTGGAAAATC,"Exon (Odf2-212/Odf2, exon 4 of 5)",2,29889221,29901107,11887,1,Odf2-212,4268,Odf2-212;Odf2-219;Odf2-211;Odf2-208;Odf2-205;Odf2-204;Odf2-225;Odf2-213;Odf2-217;Odf2-206;Odf2-203;Odf2-224;Odf2-218;Odf2-202;Odf2-201;Odf2-220;Odf2-207;Odf2-210;Odf2-209;Odf2-215,Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,8,18286,ENSMUSG00000026790,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1015,cg13943140,-0.0000151,0.00000886,-1.703492978,0.089478034,loss,ns,0.00000595,0.000015,0.395325003,0.692874944,pos,ns,-0.001484168,0.004408766,-0.336640303,0.736615846,neg,ns,0.132758943,-0.000267672,0.000151617,-1.765445243,0.078473396,neg,ns,0.868752981,Gm2691,Gm2691_Intergenic_downstream,6,10760258,10760307,10760258,10760259,50,-,CGTTTCTGCTTGATAGCCTGTAACATTTCCATGTAGTGCACTTTGCATGG,Distal Intergenic,6,10774114,10775014,901,2,Gm2691-201,14756,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,100040285,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23526,cg06047493,-0.0000125,0.00000607,-2.067039751,0.039560254,loss,ns,0.00000408,0.0000103,0.395257052,0.692925034,pos,ns,0.0000728,0.003021801,0.024096682,0.980790993,pos,ns,0.008423531,-0.000114936,0.000103919,-1.106007121,0.269581005,neg,ns,0.864027824,Gm6171,Gm6171_Intergenic_downstream,12,118787308,118787357,118787356,118787357,50,-,TCATTTAACCTTGGACAGCAACTTTAATAGCTTCCACGGGACAACTGTCG,Distal Intergenic,12,118793188,118793832,645,2,Gm6171-201,6524,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,620665,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25480,cg17089262,-0.00000768,0.00000624,-1.22948624,0.219821894,loss,ns,0.00000419,0.0000106,0.395248503,0.692931336,pos,ns,-0.00249118,0.003108023,-0.801532163,0.423437577,neg,ns,0.373210604,0.0000547,0.000106885,0.511985906,0.609025409,pos,ns,0.908431388,Plp1,Plp1_Exon,X,136832055,136832104,136832103,136832104,50,-,GCAGATCTTTGGCGACTACAAGACCACCATCTGCGGCAAGGGCCTGAGCG,"Exon (Plp1-201/Plp1, exon 3 of 7)",20,136822671,136839733,17063,1,Plp1-201,9384,Plp1-201;Plp1-202;Plp1-203;Plp1-204,Plp1;Plp1;Plp1;Plp1,0;0;0;-1147,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,8,18823,ENSMUSG00000031425,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
923,cg25370017,-0.000100495,0.0000101,-9.913881844,2.65E-20,loss,yes,0.0000068,0.0000172,0.395055443,0.69307366,pos,ns,-0.017291251,0.005045199,-3.42726859,0.000692013,neg,ns,3.159885868,0.000141673,0.000173504,0.81654058,0.414818046,pos,ns,0.850868537,Fhit,Fhit_Intron,14,9861861,9861910,9861909,9861910,50,+,TTATAATGTCAGGATTTACGGCTCTAACACTGAGGGTCTCTCTGACCTCG,"Intron (Fhit-204/Fhit, intron 4 of 6)",14,9550092,10453458,903367,2,Fhit-204,591548,Fhit-204;Fhit-206;Fhit-201;Fhit-208;Fhit-205;Fhit-203;Fhit-207;Hmgb3-ps-201,Fhit;Fhit;Fhit;Fhit;Fhit;Fhit;Fhit;Hmgb3-ps,0;0;0;0;0;0;0;-1192,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,6,14198,ENSMUSG00000060579,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18396,cg00398876,-0.000074,0.0000121,-6.097771966,3.20E-09,loss,yes,-0.00000815,0.0000206,-0.395032771,0.693090374,neg,ns,0.018911577,0.006040876,3.130601434,0.001910684,pos,ns,2.718811148,-0.000532403,0.000207745,-2.562768851,0.0108561,neg,ns,0.230597529,Dlx3,Dlx3_Intergenic_downstream,11,95126718,95126767,95126718,95126719,50,+,CGGGCAGACTTGCTGGAGACACTGCATTTTATTAGGGCTGGGCTGCCAGC,Distal Intergenic,11,95120119,95125296,5178,1,Dlx3-201,6599,Dlx3-201,Dlx3,6599,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,13393,ENSMUSG00000001510,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12199,cg01068449,-0.000000054,0.00000393,-0.013745052,0.989042222,loss,ns,0.00000263,0.00000667,0.394980483,0.693128922,pos,ns,0.011613799,0.001953817,5.944159707,7.48E-09,pos,ns,8.12636798,-0.000200689,0.0000672,-2.986817413,0.003043869,neg,ns,0.929214841,Fancc,Fancc_Intron,13,63337369,63337418,63337369,63337370,50,+,CGATAAATGAATCAGATGATGCAATTAGGAAGCAGGCTCTTCAGGTTACC,"Intron (Gm16133-202/Gm16133-202, intron 1 of 1)",13,63285043,63431724,146682,2,Fancc-218,94306,Fancc-218;Fancc-201;Fancc-214;Fancc-217;Fancc-202;Fancc-207;Fancc-213;Fancc-205;Fancc-210,Fancc;Fancc;Fancc;Fancc;Fancc;Fancc;Fancc;Fancc;Fancc,0;0;0;0;0;0;0;0;60749,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,14088,ENSMUSG00000021461,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18947,cg06188611,-0.000000205,0.0000041,-0.050011668,0.960145297,loss,ns,-0.00000275,0.00000696,-0.394972922,0.693134496,neg,ns,0.000818431,0.002039004,0.401387494,0.688411403,pos,ns,0.162151944,-0.0000677,0.0000701,-0.965679691,0.334957215,neg,ns,0.897816479,Cacnb1,Cacnb1_Exon,11,98010311,98010360,98010311,98010312,50,+,CGACGGTCCCACCAGGATGATGGGCCTCATGGAAGGCACCACGTCATAGG,"Exon (Cacnb1-201/Cacnb1, exon 8 of 14)",11,98001508,98022634,21127,2,Cacnb1-201,12274,Cacnb1-201;Cacnb1-203;Cacnb1-204;Cacnb1-202;Cacnb1-205;Cacnb1-207;Cacnb1-206,Cacnb1;Cacnb1;Cacnb1;Cacnb1;Cacnb1;Cacnb1;Cacnb1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,12295,ENSMUSG00000020882,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
491,cg18728108,0.00000578,0.00000239,2.415364896,0.016297669,gain,ns,-0.0000016,0.00000406,-0.394874581,0.693206999,neg,ns,0.000457771,0.001190414,0.384547381,0.700836452,pos,ns,0.154383318,0.0000474,0.0000409,1.158257205,0.247650622,pos,ns,0.943205233,Celf2,Celf2_threeUTR,2,6541916,6541965,6541964,6541965,50,+,CACACAATAACATACATTACAAAAATAAGTTTGACTGTTTCAACTACACG,3' UTR,2,6539694,7396000,856307,2,Celf2-201,854035,Celf2-201;Celf2-202;Celf2-204;Celf2-214;Celf2-206;Celf2-226;Celf2-223;Celf2-224;Celf2-221;Celf2-205;Celf2-211;Celf2-213;Celf2-225;Celf2-228;Celf2-216,Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,24,14007,ENSMUSG00000002107,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20417,cg01524853,0.0000672,0.00000497,13.51511604,4.85E-33,gain,yes,-0.00000333,0.00000844,-0.394743886,0.69330336,neg,ns,0.00601562,0.002473516,2.432011523,0.015581165,pos,ns,1.807400075,-0.00000933,0.0000851,-0.10973101,0.912693706,neg,ns,0.133147919,Hoxc4,Hoxc4_Exon,15,103034775,103034824,103034823,103034824,50,-,CTCCATGCGAAGAATATTCGCAAAATAGCTACATCCCTGAACACAGTCCG,"Exon (Hoxc4-202/Hoxc4, exon 2 of 4)",15,103018934,103036405,17472,1,Hoxc4-202,15841,Hoxc4-202;Hoxc4-201,Hoxc4;Hoxc4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,91,15423,ENSMUSG00000075394,conserved gene and region,15,103034736,103035107,372,*,372,27,0.626344086,0.794494542,0.072580645,4.60E-17,CpGisland,TRUE,NA,NRS
1775,cg05388242,0.0000134,0.0000104,1.282594142,0.200592495,gain,ns,0.000007,0.0000177,0.394742951,0.69330405,pos,ns,-0.009712454,0.005193765,-1.870021739,0.062423143,neg,ns,1.204654367,0.000432651,0.000178613,2.422278782,0.015996622,pos,ns,0.124245707,Kctd1,Kctd1_fiveUTR,18,15151395,15151444,15151395,15151396,50,+,CGATCTGCTCGGCTCGCCACACCAGAGAGAAATGCAATAGCTTGGCTAAG,Promoter (<=1kb),18,14968685,15151446,182762,2,Kctd1-201,2,Kctd1-201,Kctd1,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,9,24,106931,ENSMUSG00000036225,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
26651,cg02258144,-0.00000171,0.00000423,-0.40343291,0.686907902,loss,ns,-0.00000284,0.00000719,-0.394591783,0.693415512,neg,ns,-0.00084592,0.002106192,-0.401634742,0.688229596,neg,ns,0.162266655,-0.000141148,0.0000724,-1.948696971,0.052233543,neg,ns,0.913130284,Ube4b,Ube4b_threeUTR,4,149351492,149351541,149351540,149351541,50,-,GCTGAATGAGAAGGCCATAAAAATTCAGACATCTTCTCAGGAAGCTCTCG,3' UTR,4,149328416,149426749,98334,2,Ube4b-202,75208,Ube4b-202;Ube4b-213;Ube4b-214;Ube4b-210;Ube4b-212;Ube4b-204,Ube4b;Ube4b;Ube4b;Ube4b;Ube4b;Ube4b,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,4,63958,ENSMUSG00000028960,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8726,cg01933636,0.0000127,0.00000329,3.848077518,0.000144566,gain,ns,0.00000221,0.00000559,0.394403245,0.693554537,pos,ns,0.000117298,0.00163796,0.071612484,0.942956483,pos,ns,0.025508349,0.00013195,0.0000563,2.342472763,0.019788827,pos,ns,0.916275376,Fbxw4,Fbxw4_Intron,19,45628832,45628881,45628880,45628881,50,-,GGTTAGCCGACACCTCTGCTCTGTGGAATTTTAATTAACTTCTCTCATCG,"Intron (Fbxw4-206/Fbxw4, intron 1 of 4)",19,45578254,45631138,52885,2,Fbxw4-206,2257,Fbxw4-206;Fbxw4-201;Fbxw4-208;Fbxw4-202,Fbxw4;Fbxw4;Fbxw4;Fbxw4,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,14,30838,ENSMUSG00000040913,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25891,cg14562573,-0.00000637,0.0000037,-1.720450867,0.086348408,loss,ns,-0.00000248,0.00000629,-0.394380602,0.693571234,neg,ns,-0.001321407,0.001843712,-0.716710109,0.474092598,neg,ns,0.324136825,0.0000162,0.0000634,0.255379495,0.798599361,pos,ns,0.917494211,Frmpd3,Frmpd3_Exon,X,140427714,140427763,140427714,140427715,50,+,CGACTCTGAGCTTGTCAGCTTCTGCTACCTCCATATGCGGGAACAAAGGA,"Exon (Frmpd3-203/Frmpd3, exon 14 of 15)",20,140342263,140435467,93205,1,Frmpd3-203,85451,Frmpd3-203,Frmpd3,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,10,245643,ENSMUSG00000042425,conserved gene and region,X,140427666,140427827,162,*,162,11,0.574074074,0.828837209,0.067901235,0.000000604,CpGisland,TRUE,U11,Tr-P
7931,cg25540163,-0.0000228,0.00000773,-2.949970333,0.003420066,loss,ns,0.00000518,0.0000131,0.394293905,0.693635167,pos,ns,-0.002179429,0.00384791,-0.566392916,0.571536518,neg,ns,0.242956015,-0.000056,0.000132329,-0.423396055,0.672299916,neg,ns,0.819839311,Hif1an,Hif1an_Intron,19,44636643,44636692,44636643,44636644,50,+,CGGCTCAGTGCATTCAAATTTATTCAAACTCGGTGCCTGACAGTGATGGA,"Intron (Gm35460-201/Gm35460-201, intron 3 of 6)",19,44562850,44576274,13425,1,Hif1an-201,73793,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,31,319594,ENSMUSG00000036450,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8827,cg07583211,-0.0000442,0.00000789,-5.598093522,4.78E-08,loss,yes,0.00000528,0.0000134,0.394279524,0.693645773,pos,ns,-0.009633207,0.003926793,-2.453199572,0.01470956,neg,ns,1.83240033,0.0000883,0.000135042,0.65389397,0.513664877,pos,ns,0.868932768,Sidt2,Sidt2_threeUTR,9,45944437,45944486,45944485,45944486,50,-,GCAGCCCCAGCAGGATGTACCCCAGGTTGCTGAGGATGTTGTTGAAGGCG,3' UTR,9,45937857,45955258,17402,2,Sidt2-201,10772,Sidt2-201;Sidt2-202;Sidt2-203;Sidt2-205;Sidt2-209;Sidt2-206;Sidt2-207;Sidt2-204;Sidt2-212;Sidt2-214;Sidt2-211;Sidt2-213;Sidt2-210,Sidt2;Sidt2;Sidt2;Sidt2;Sidt2;Sidt2;Sidt2;Sidt2;Sidt2;Sidt2;Sidt2;Sidt2;Sidt2,0;0;-3029;0;0;0;0;3769;0;7345;7286;7518;3821,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,2,214597,ENSMUSG00000034908,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17711,cg10297008,0.00000578,0.00000168,3.432974275,0.000678139,gain,ns,0.00000113,0.00000286,0.394052964,0.693812857,pos,ns,0.001510259,0.000838289,1.801597941,0.072580208,pos,ns,1.139181793,-0.0000142,0.0000288,-0.491769587,0.623230267,neg,ns,0.03925551,Zic4,Zic4_Intron,9,91406145,91406194,91406145,91406146,50,+,CGTGTGACACTGCCTATTCACCAGATAGATGTTCCCTGCCACACACGACC,"Intron (Gm29478-201/Gm29478-201, intron 1 of 2)",9,91382410,91388044,5635,1,Zic4-202,23735,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,55,22774,ENSMUSG00000036972,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
7348,cg17314597,0.000026,0.00000433,6.016940162,5.01E-09,gain,yes,0.00000289,0.00000735,0.393886097,0.693935928,pos,ns,0.004876867,0.002152701,2.265464187,0.024173882,pos,ns,1.616653596,-0.000154566,0.000074,-2.087845277,0.037627848,neg,ns,0.096674612,Crtac1,Crtac1_Intron,19,42380630,42380679,42380630,42380631,50,+,CGACCTTAAAGAGTCTGCGAGGCTGAATGAATTGGTGCATCTCGCTGCAT,"Intron (Crtac1-203/Crtac1, intron 2 of 14)",19,42268287,42431785,163499,2,Crtac1-203,51106,Crtac1-203;Crtac1-201;Gm50184-201,Crtac1;Crtac1;Gm50184,0;0;-1529,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,8,72832,ENSMUSG00000042401,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
6204,cg19536899,-0.00000335,0.00000367,-0.913016844,0.361943195,loss,ns,-0.00000246,0.00000624,-0.393703602,0.694070535,neg,ns,-0.001811282,0.001827231,-0.991271278,0.322326221,neg,ns,0.491704363,0.0000297,0.0000628,0.473205861,0.636399349,pos,ns,0.905914053,Arid5a,Arid5a_Exon,1,36317231,36317280,36317279,36317280,50,-,GAGGAGGAGCAGGCCTTCCTGGTCAGCCTCTACAAGTTCATGAAGGAGCG,"Exon (Arid5a-207/Arid5a, exon 3 of 7)",1,36307733,36319203,11471,1,Arid5a-207,9498,Arid5a-207;Arid5a-211;Arid5a-214;Arid5a-212;Arid5a-206;Arid5a-201;Arid5a-205;Arid5a-203;Arid5a-204;Arid5a-208;Arid5a-215;Arid5a-202;Arid5a-209;Arid5a-213;Arid5a-210,Arid5a;Arid5a;Arid5a;Arid5a;Arid5a;Arid5a;Arid5a;Arid5a;Arid5a;Arid5a;Arid5a;Arid5a;Arid5a;Arid5a;Arid5a,0;0;0;0;0;0;0;0;0;0;9473;0;9452;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,214855,ENSMUSG00000037447,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2248,cg16773741,0.0000157,0.0000102,1.549803439,0.122208967,gain,ns,0.00000679,0.0000173,0.393690662,0.694080079,pos,ns,-0.001424785,0.005056159,-0.281791976,0.778291044,neg,ns,0.108857967,-0.0000902,0.000173881,-0.518598426,0.60441078,neg,ns,0.676159898,Cldn5,Cldn5_Promoter,16,18775940,18775989,18775988,18775989,50,-,CCAGTGGACCTTTCGAGAAATGGCTGGGCCATTGTGCAGAAGAATGCCCG,Promoter (<=1kb),16,18776847,18778262,1416,1,Cldn5-201,-907,Cdc45-201;Cdc45-202;Cldn5-201,Cdc45;Cdc45;Cldn5,35983;35637;-858,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,2,12741,ENSMUSG00000041378,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
14367,cg04400060,-0.0000947,0.0000122,-7.793345677,9.95E-14,loss,yes,-0.00000813,0.0000207,-0.393601589,0.694145783,neg,ns,0.002487421,0.00604981,0.411156867,0.681241599,pos,ns,0.16669884,0.000151187,0.000208052,0.726675209,0.467973294,pos,ns,0.65057757,Smad7,Smad7_Intron,18,75378783,75378832,75378831,75378832,50,+,TCTCCTGAAATGCAGGGGTGACTCCAAGGCTGGCCCTTCCCTTTCCTGCG,"Intron (Smad7-201/Smad7, intron 3 of 3)",18,75367529,75395935,28407,1,Smad7-201,11254,Smad7-201;Smad7-202;Smad7-205;Smad7-204;Smad7-203,Smad7;Smad7;Smad7;Smad7;Smad7,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,19,17131,ENSMUSG00000025880,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26663,cg22871082,0.000013,0.0000103,1.254766172,0.210508813,gain,ns,0.00000691,0.0000176,0.39346927,0.69424339,pos,ns,-0.007629921,0.005146438,-1.482563689,0.139206219,neg,ns,0.856341362,-0.0000854,0.000176986,-0.48230966,0.629926353,neg,ns,0.739914113,Ptgs2,Ptgs2_Exon,1,150102694,150102743,150102742,150102743,50,+,TTCTTTGCCCAGCACTTCACGCATCAGTTTTTCAAGACAGATCATAAGCG,"Exon (Ptgs2-201/Ptgs2, exon 5 of 10)",1,150100031,150108227,8197,1,Ptgs2-201,2663,Ptgs2-201;Ptgs2-202,Ptgs2;Ptgs2,0;2362,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,19225,ENSMUSG00000032487,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10964,cg04759679,-0.00000421,0.00000293,-1.434797401,0.152352903,loss,ns,-0.00000196,0.00000498,-0.393462829,0.694248142,neg,ns,-0.000820474,0.001460165,-0.5619051,0.574586709,neg,ns,0.240644424,0.0000225,0.0000502,0.448639711,0.654005016,pos,ns,0.930795221,Tcf7l2,Tcf7l2_Exon,19,55926006,55926055,55926006,55926007,50,+,CGCTTTGGCCTTGATCAACAGAATAACTGGTGCGGCCCTTGCAGGTGTGT,"Exon (Tcf7l2-213/Tcf7l2, exon 12 of 14)",19,55741820,55933229,191410,1,Tcf7l2-213,184186,Tcf7l2-213;Tcf7l2-201;Tcf7l2-208;Tcf7l2-211;Tcf7l2-212;Tcf7l2-222;Tcf7l2-215;Tcf7l2-207;Tcf7l2-202;Tcf7l2-209;Tcf7l2-210;Tcf7l2-203,Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,88,21416,ENSMUSG00000024985,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21502,cg22371517,0.0000339,0.00000451,7.51074318,6.32E-13,gain,yes,0.00000302,0.00000767,0.393447075,0.694259763,pos,ns,0.006860916,0.002246382,3.05420662,0.002452348,pos,ns,2.610417868,-0.000104858,0.0000773,-1.357336445,0.175661674,neg,ns,0.070254584,Bcl11b,Bcl11b_Promoter,12,108004110,108004159,108004158,108004159,50,+,GCGGACGTGACGTTTAATCTGCACTAGAGACAAAAAGACCCAGAGAGTCG,Promoter (<=1kb),12,107910403,108003602,93200,2,Bcl11b-201,-508,Bcl11b-201;Bcl11b-202;Bcl11b-203,Bcl11b;Bcl11b;Bcl11b,0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,8,39,58208,ENSMUSG00000048251,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
7406,cg09091699,-0.0000451,0.00000787,-5.730080918,2.38E-08,loss,yes,-0.00000526,0.0000134,-0.393345978,0.694334343,neg,ns,-0.00896673,0.003914931,-2.290393214,0.02266972,neg,ns,1.644553846,0.000128366,0.000134634,0.953446272,0.341106846,pos,ns,0.847092146,Gm7181,Gm7181_Intergenic_upstream,5,42557469,42557518,42557517,42557518,50,-,TTTAGGTGGCATTTTCAAATATAGAAAACAATTTTGTAAACTCCCTGCCG,Distal Intergenic,5,42499981,42500414,434,2,Gm7181-201,-57104,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,636612,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17124,cg12306578,-0.0000293,0.00000816,-3.585662689,0.000390465,loss,ns,-0.00000545,0.0000139,-0.393218483,0.694428401,neg,ns,-0.006815044,0.004062848,-1.67740545,0.094471149,neg,ns,1.024700802,0.00016144,0.000139721,1.15544281,0.248798924,pos,ns,0.756585829,Nkd1,Nkd1_Intron,8,88537497,88537546,88537497,88537498,50,+,CGAGAGCCAGTTATTTCAGGAGACAAGCAAAGAGCCCTTTATTCTCACGT,"Intron (Nkd1-201/Nkd1, intron 3 of 9)",8,88521354,88593618,72265,1,Nkd1-201,16143,Nkd1-201;Nkd1-202,Nkd1;Nkd1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,3,93960,ENSMUSG00000031661,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9489,cg24270405,-0.0000249,0.0000137,-1.813947296,0.070652544,loss,ns,-0.00000918,0.0000233,-0.393139427,0.694486726,neg,ns,-0.007106605,0.006838387,-1.03922233,0.299511212,neg,ns,0.523586916,0.000456026,0.000235172,1.939121084,0.053393791,pos,ns,0.631239629,Fam120a,Fam120a_Exon,13,48880842,48880891,48880842,48880843,50,-,CGGCAAGCGCTGTCTGTACTTAGTGCATTTAAATGAGGATTTGTATTGCA,"Exon (Fam120a-201/Fam120a, exon 18 of 18)",13,48879219,48968017,88799,2,Fam120a-201,87126,Fam120a-201,Fam120a,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,8,218236,ENSMUSG00000038014,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11583,cg18764080,-0.00000182,0.00000202,-0.901830693,0.367846948,loss,ns,-0.00000135,0.00000343,-0.393099942,0.694515858,neg,ns,-0.001493169,0.001003472,-1.488002821,0.13776664,neg,ns,0.860855933,0.0000509,0.0000345,1.47468753,0.1413114,pos,ns,0.95588937,Pkp4,Pkp4_fiveUTR,2,59266441,59266490,59266489,59266490,50,-,TGCCAGTCAGCTAGAAAGATGTAGGCTTGGAGCAGAATCACCAAGCATCG,5' UTR,2,59160850,59355204,194355,1,Pkp4-210,105591,Pkp4-210;Pkp4-202;Pkp4-211;Pkp4-205;Pkp4-201;Pkp4-212;Pkp4-213;Pkp4-214;Pkp4-203;Pkp4-207,Pkp4;Pkp4;Pkp4;Pkp4;Pkp4;Pkp4;Pkp4;Pkp4;Pkp4;Pkp4,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,7,227937,ENSMUSG00000026991,conserved gene but different region,2,59266479,59266598,120,*,120,11,0.6,1.021671827,0.091666667,2.74E-08,CpGisland,TRUE,U11,Tr-P
6417,cg22532263,-0.000002,0.00000131,-1.53203435,0.1265338,loss,ns,0.000000872,0.00000222,0.393096792,0.694518182,pos,ns,-0.001221566,0.000649878,-1.879684869,0.061088793,neg,ns,1.214038453,0.000048,0.0000223,2.149861558,0.032339589,pos,ns,0.96885275,Zfp536,Zfp536_Intergenic_downstream,7,37180400,37180449,37180448,37180449,50,-,TAAATTCATGACAACAAAAAAGCAACTTGAGGCACTTTTGGAAATGACCG,Distal Intergenic,7,37472135,37479986,7852,2,Zfp536-204,299586,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,112,243937,ENSMUSG00000043456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20036,cg03089788,-0.0000208,0.00000485,-4.294080296,0.0000235,loss,ns,0.00000324,0.00000824,0.393040292,0.694559868,pos,ns,-0.000683139,0.002414147,-0.282973027,0.777386374,neg,ns,0.109363076,0.0000425,0.000083,0.511523327,0.609348814,pos,ns,0.922259599,Atxn7l3,Atxn7l3_fiveUTR,11,102294997,102295046,102295045,102295046,50,+,CATTTGTAAACTCTTGTGGAGACGGCGCTCTGACTGCTCATAGCACAGCG,Promoter (<=1kb),11,102289300,102295312,6013,2,Atxn7l3-203,266,Atxn7l3-206;Atxn7l3-205;Atxn7l3-204;Atxn7l3-203;Atxn7l3-201;Atxn7l3-202,Atxn7l3;Atxn7l3;Atxn7l3;Atxn7l3;Atxn7l3;Atxn7l3,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,7,217218,ENSMUSG00000059995,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
13021,cg19261448,-0.0000166,0.00000464,-3.578130403,0.000401426,loss,ns,-0.0000031,0.00000789,-0.393031833,0.694566109,neg,ns,0.001173559,0.002311406,0.507725064,0.61200721,pos,ns,0.213243461,-0.000110924,0.0000795,-1.395458906,0.163876276,neg,ns,0.961557826,Rora,Rora_Intron,9,69210444,69210493,69210492,69210493,50,-,TATTTTAATTTTAATTTATTTCCTGGTGGCCTTTTATGCCTCCTTAGGCG,"Intron (Rora-201/Rora, intron 2 of 10)",9,68653786,69388246,734461,1,Rora-201,556658,Rora-201;Rora-206;Rora-203,Rora;Rora;Rora,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,19,19883,ENSMUSG00000032238,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
967,cg25069660,0.000168931,0.0000177,9.517561027,5.22E-19,gain,yes,-0.0000118,0.0000302,-0.392956243,0.694621881,neg,ns,0.064080224,0.008834048,7.253778107,3.26E-12,pos,yes,11.48623649,-0.002282379,0.000303802,-7.512715494,6.24E-13,neg,yes,0.532155198,Qk,Qk_threeUTR,17,10209154,10209203,10209154,10209155,50,+,CGAAGGTTCATGCATGATGCATCATCACACAGTACATTCAGAGAGAGCTT,3' UTR,17,10202601,10319380,116780,2,Qk-204,110177,Qk-204;Qk-202;Qk-203;Qk-201;Qk-206;Qk-205,Qk;Qk;Qk;Qk;Qk;Qk,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,12,17,19317,ENSMUSG00000062078,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19007,cg14374045,-0.00000362,0.00000169,-2.140456876,0.03309788,loss,ns,0.00000113,0.00000288,0.392939409,0.694634302,pos,ns,0.00038992,0.000842325,0.462908922,0.643754435,pos,ns,0.191279766,-0.00000648,0.000029,-0.223673293,0.823158857,neg,ns,0.954538635,Med1,Med1_Exon,11,98158295,98158344,98158343,98158344,50,+,ACTCATTGGGTTGTTGCCTGTGGTCATGCCATACCCTGGGCTGCTAGCCG,"Exon (Med1-202/Med1, exon 17 of 18)",11,98152154,98193260,41107,2,Med1-202,34916,Med1-202;Med1-203;Med1-204;Med1-201;Med1-207,Med1;Med1;Med1;Med1;Med1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,13,19014,ENSMUSG00000018160,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18610,cg03342744,0.0000926,0.0000171,5.400139355,0.000000133,gain,yes,-0.0000114,0.0000291,-0.39282242,0.694720623,neg,ns,0.019799077,0.008531541,2.320691657,0.020952125,pos,ns,1.678771927,-0.000279223,0.000293399,-0.951683849,0.34199875,neg,ns,0.620097675,Hoxb4,Hoxb4_Exon,11,96317221,96317270,96317269,96317270,50,-,TGGTCACAAATTCGTATCTAGGGGAATATGTAGTTGACATAAACACTCCG,Promoter (1-2kb),11,96318267,96321638,3372,1,Hoxb4-201,-1046,Hoxb4-201,Hoxb4,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,6,15412,ENSMUSG00000038692,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
10507,cg16256434,-0.000009,0.00000296,-3.039593054,0.002570831,loss,ns,-0.00000198,0.00000503,-0.392763448,0.694764137,neg,ns,0.001339305,0.001473282,0.909062636,0.364023269,pos,ns,0.438870855,-0.0000921,0.0000507,-1.816953462,0.070189739,neg,ns,0.921776521,Npas3,Npas3_Intron,12,53926603,53926652,53926651,53926652,50,+,CAGCATGTTTTTATCATAAGGCAGATAGTCATTAATTTACAGAATCAACG,"Intron (Npas3-204/Npas3, intron 4 of 10)",12,53248157,54069532,821376,1,Npas3-204,678446,Npas3-204;Npas3-201;Npas3-203,Npas3;Npas3;Npas3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,83,103,27386,ENSMUSG00000021010,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
85,cg11046678,-0.00000071,0.00000122,-0.580724654,0.561847965,loss,ns,0.000000815,0.00000208,0.392645898,0.694850879,pos,ns,0.000428298,0.00060842,0.703951049,0.481991688,pos,ns,0.316960451,0.00000295,0.0000209,0.141015864,0.887948998,pos,ns,0.049554478,Plag1,Plag1_Promoter,4,3938130,3938179,3938178,3938179,50,+,CTCGGCTAGTCCCATAATTTAAATAACCCTGATATTTCTCCCGCTAAACG,Promoter (<=1kb),4,3900996,3938382,37387,2,Plag1-201,203,Chchd7-202;Chchd7-206;Chchd7-213;Chchd7-207;Chchd7-208;Chchd7-201;Chchd7-205;Chchd7-214;Chchd7-203;Chchd7-209;Chchd7-210;Chchd7-211;Chchd7-204;Plag1-201;Plag1-202;Plag1-204;Plag1-203,Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Plag1;Plag1;Plag1;Plag1,-709;-709;-711;-735;-735;-735;-735;-735;-741;-864;-1243;-1321;-2675;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,8,22,56711,ENSMUSG00000003282,conserved gene and region,4,3938107,3939194,1088,*,1088,119,0.706801471,0.896508745,0.109375,3.91E-95,CpGisland,TRUE,U1,Pr-A
629,cg20846050,-0.000016,0.00000534,-2.988473688,0.003027885,loss,ns,0.00000356,0.00000907,0.392480863,0.694972666,pos,ns,-0.002850378,0.002657737,-1.072483126,0.284337268,neg,ns,0.546166213,-0.0000818,0.0000914,-0.895262678,0.371341289,neg,ns,0.889498813,Rbfox1,Rbfox1_Intron,16,7293123,7293172,7293171,7293172,50,+,TCACCAAACTCTCAGTAACCATGGTAACTGTATACAAACCCATGCTGGCG,"Intron (Rbfox1-205/Rbfox1, intron 8 of 11)",16,5885355,7353045,1467691,1,Rbfox1-205,1407768,Rbfox1-205;Rbfox1-201;Rbfox1-202;Rbfox1-203;Rbfox1-208;Rbfox1-207,Rbfox1;Rbfox1;Rbfox1;Rbfox1;Rbfox1;Rbfox1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,35,268859,ENSMUSG00000008658,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8480,cg24023187,0.0000181,0.00000317,5.701990358,2.76E-08,gain,yes,0.00000212,0.00000539,0.392410077,0.695024905,pos,ns,0.004446788,0.001579415,2.81546474,0.005182574,pos,ns,2.285454477,-0.00000584,0.0000543,-0.107586236,0.914393512,neg,ns,0.094904888,Lbx1,Lbx1_Intergenic_downstream,19,45223793,45223842,45223841,45223842,50,-,TGCAGATTTACTTCGCTCATTGCCACATAACTCATCCCTAAAAGCCGGCG,Distal Intergenic,19,45232684,45235812,3129,2,Lbx1-201,12019,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,30,50,16814,ENSMUSG00000025216,mapped to different genes,19,45223712,45223906,195,*,195,15,0.564102564,0.969827586,0.076923077,4.54E-10,CpGisland,TRUE,U13,Hc-P
11485,cg11497791,0.00000884,0.00000331,2.667962383,0.008032504,gain,ns,-0.00000221,0.00000563,-0.392406888,0.695027259,neg,ns,0.0000635,0.001649325,0.038489116,0.969322484,pos,ns,0.013531714,0.000109786,0.0000567,1.935570156,0.053829497,pos,ns,0.913676278,Insyn1,Insyn1_Exon,9,58499364,58499413,58499364,58499365,50,-,CGGTTCAGTGACAAAGTGCTCTACCATGCTCTGTGCTGTGACGATGAGGA,"Exon (Insyn1-201/Insyn1, exon 3 of 3)",9,58488603,58499742,11140,1,Insyn1-201,10761,Insyn1-201;Insyn1-202,Insyn1;Insyn1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,4,319477,ENSMUSG00000066607,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24714,cg00400141,-0.0000011,0.00000144,-0.762994044,0.446047166,loss,ns,-0.000000958,0.00000244,-0.392403974,0.695029409,neg,ns,-0.000602132,0.000715474,-0.841584936,0.400669058,neg,ns,0.397214195,0.00000684,0.0000246,0.278115726,0.781108928,pos,ns,0.958689127,Ccnt2,Ccnt2_Exon,1,127797618,127797667,127797618,127797619,50,-,CGGCTTGTTTCTCAGATCTTTGGGGGATAGCAAGAAACATTTGAGTGAAT,"Exon (Ccnt2-207/Ccnt2, exon 1 of 5)",1,127774164,127798401,24238,1,Ccnt2-205,23454,Ccnt2-203;Ccnt2-204;Ccnt2-206;Ccnt2-205;Ccnt2-202;Ccnt2-201;Ccnt2-207,Ccnt2;Ccnt2;Ccnt2;Ccnt2;Ccnt2;Ccnt2;Ccnt2,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,11,72949,ENSMUSG00000026349,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6174,cg18278920,0.0000393,0.00000431,9.125380047,9.37E-18,gain,yes,0.00000287,0.00000732,0.392403193,0.695029985,pos,ns,0.009424545,0.002145191,4.393335631,0.0000153,pos,ns,4.814066496,-0.000283054,0.0000738,-3.836829473,0.000151031,neg,ns,0.058536041,Tenm2,Tenm2_Exon,11,36221408,36221457,36221456,36221457,50,+,CTTTGCCTCCAGATGGCATTGTTGCCACATCATCGTTTCCTGGTAAGCCG,"Exon (Tenm2-202/Tenm2, exon 8 of 31)",11,36006656,37235882,1229227,2,Tenm2-202,1014425,Tenm2-202;Tenm2-208;Tenm2-201;Tenm2-204;Tenm2-205;Tenm2-206,Tenm2;Tenm2;Tenm2;Tenm2;Tenm2;Tenm2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,21,84,23964,ENSMUSG00000049336,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19208,cg07672217,0.0000158,0.00000166,9.465932532,7.66E-19,gain,yes,0.00000111,0.00000283,0.392380757,0.695046543,pos,ns,0.002783439,0.000828598,3.359215996,0.000879255,pos,ns,3.055885365,0.0000484,0.0000285,1.699234251,0.090278247,pos,ns,0.017695873,Wnt1,Wnt1_Exon,15,98792809,98792858,98792809,98792810,50,-,CGCGTCACCGAGCGCTGCAACTGCACCTTCCACTGGTGCTGCCACGTCAG,"Exon (Wnt1-201/Wnt1, exon 4 of 4)",15,98789857,98793837,3981,1,Wnt1-201,2952,Wnt1-201,Wnt1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,12,22408,ENSMUSG00000022997,conserved gene and region,15,98792311,98793016,706,*,706,73,0.662889518,0.946832745,0.103399433,1.17E-56,CpGisland,TRUE,U13,Hc-P
20209,cg08588194,0.0000417,0.00000406,10.25648584,1.91E-21,gain,yes,-0.00000271,0.0000069,-0.392369893,0.695054561,neg,ns,0.001200784,0.002022267,0.593780775,0.553091768,pos,ns,0.257202805,-0.0000207,0.0000695,-0.297655872,0.766165203,neg,ns,0.089010119,Unc79,Unc79_fiveUTR,12,102949492,102949541,102949492,102949493,50,+,CGGAGCGAGGGAGCTCACACGACACAGATTTTGGGGCAAAGCCTTTCCAA,Promoter (<=1kb),12,102948859,103184001,235143,1,Unc79-202,633,Unc79-202;Unc79-208,Unc79;Unc79,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,12,24,217843,ENSMUSG00000021198,conserved gene and region,12,102948810,102949512,703,*,703,59,0.644381223,0.809149434,0.083926031,2.91E-40,CpGisland,TRUE,NA,NRS
5972,cg20623660,0.000029,0.0000136,2.131941611,0.033797599,gain,ns,0.00000906,0.0000231,0.392203798,0.695177144,pos,ns,-0.010762801,0.006768464,-1.590139354,0.112822656,neg,ns,0.947603681,0.000231131,0.000232767,0.992972057,0.321497996,pos,ns,0.559267114,Slit3,Slit3_Exon,11,35616864,35616913,35616912,35616913,50,+,GGAACGATGGAAACGGAACATGGTTCTGTCAAGCACCGCGGAAAGCACCG,"Exon (Mir218-2-201/Mir218-2-201, exon 1 of 1)",11,35121224,35708507,587284,1,Slit3-201,495640,Slit3-201;Slit3-202,Slit3;Slit3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,21,20564,ENSMUSG00000056427,mapped to different genes,11,35616700,35617001,302,*,302,18,0.602649007,0.686363636,0.059602649,4.00E-10,CpGisland,TRUE,U15,NS
23894,cg09151093,-0.00000472,0.00000391,-1.207860188,0.22802171,loss,ns,-0.0000026,0.00000664,-0.392153677,0.695214136,neg,ns,0.002766748,0.001945062,1.422447169,0.155901905,pos,ns,0.807148579,-0.000147213,0.0000669,-2.200801669,0.02848711,neg,ns,0.940967654,Polr3e,Polr3e_Exon,7,120940658,120940707,120940706,120940707,50,-,GAGGCCACCTTTCAGAGACAGTTTGTGCTCACGCTGAGCGAACTCAAGCG,"Exon (Polr3e-203/Polr3e, exon 17 of 20)",7,120917744,120945821,28078,1,Polr3e-203,22914,Polr3e-203;Polr3e-202;Polr3e-201;Polr3e-204,Polr3e;Polr3e;Polr3e;Polr3e,0;0;0;5828,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,26939,ENSMUSG00000030880,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22443,cg11272991,-0.0000231,0.00000749,-3.088015491,0.002197229,loss,ns,0.00000499,0.0000127,0.392088055,0.69526257,pos,ns,-0.006979571,0.003725722,-1.873347546,0.061961185,neg,ns,1.207880284,0.000197761,0.000128127,1.543470948,0.123736726,pos,ns,0.835694723,Fam222a,Fam222a_Intron,5,114571825,114571874,114571825,114571826,50,+,CGCCGCCCGCCGCCCTGATTGGTTGCTAAGTGATTTGCATCCAAGGTAAT,"Intron (Fam222a-201/Fam222a, intron 1 of 2)",5,114568016,114613220,45205,1,Fam222a-201,3809,Fam222a-201;Fam222a-202,Fam222a;Fam222a,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,16,433940,ENSMUSG00000041930,conserved gene and region,5,114571569,114571856,288,*,288,32,0.645833333,1.067531565,0.111111111,3.20E-26,CpGisland,TRUE,NA,NRS
16934,cg02603112,-0.00000461,0.00000244,-1.8913185,0.059513924,loss,ns,-0.00000162,0.00000414,-0.392043981,0.695295101,neg,ns,0.000955526,0.001213341,0.787516555,0.431581241,pos,ns,0.364937441,-0.0000643,0.0000417,-1.540545211,0.124447622,neg,ns,0.897287659,Ngef,Ngef_Exon,1,87482624,87482673,87482672,87482673,50,+,TTGATCTTGAACTCCATCTTCTTCTGAATGCTGATCATCTGTTCCGTGCG,"Exon (Ngef-201/Ngef, exon 8 of 13)",1,87476834,87510362,33529,2,Ngef-201,27689,Ngef-201;Ngef-202;Ngef-204;Ngef-203,Ngef;Ngef;Ngef;Ngef,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,53972,ENSMUSG00000026259,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20826,cg00323008,-0.0000421,0.000006,-7.020311657,1.40E-11,loss,yes,0.000004,0.0000102,0.391981175,0.695341459,pos,ns,0.013013915,0.00298689,4.357011549,0.0000179,pos,ns,4.745967736,-0.000579057,0.000102719,-5.637292717,3.89E-08,neg,yes,0.761139785,Apbb1,Apbb1_fiveUTR,7,105565579,105565628,105565627,105565628,50,-,GCCTCACAGCGAAACACGTGGCACTTGAGCATCTGGGTCAGCTTATCACG,5' UTR,7,105558483,105581653,23171,2,Apbb1-217,16025,Apbb1-217;Apbb1-209;Apbb1-215;Apbb1-212;Apbb1-219;Apbb1-201;Apbb1-208;Apbb1-214;Apbb1-213;Apbb1-205;Apbb1-221;Apbb1-218;Apbb1-202;Apbb1-210;Apbb1-207;Apbb1-206;Apbb1-220;Apbb1-204;Apbb1-203;Apbb1-216,Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1;Apbb1,0;0;0;0;0;0;0;0;0;0;0;-74;0;0;3335;3637;3643;3645;0;3042,TRUE,FALSE,FALSE,TRUE,TRUE,TRUE,TRUE,FALSE,FALSE,fiveUTR,6,8,11785,ENSMUSG00000037032,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25372,cg21587680,-0.0000561,0.0000109,-5.159767791,0.000000442,loss,yes,-0.00000724,0.0000185,-0.391962335,0.695355365,neg,ns,-0.009173011,0.005410235,-1.69549201,0.09098618,neg,ns,1.041024566,0.000276042,0.000186058,1.483637507,0.138921093,pos,ns,0.830217204,Gm13009,Gm13009_Intergenic_upstream,4,136089098,136089147,136089098,136089099,50,+,CGATTTAGAAAGTAAAGTTGCTTCTCAAACAAATAAGAAAGAAGAGGAAA,Distal Intergenic,4,136074513,136074972,460,2,Gm13009-201,-14126,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
8472,cg27135107,0.00000028,0.00000765,0.036563506,0.970856575,gain,ns,-0.00000509,0.000013,-0.391936633,0.695374336,neg,ns,0.002155099,0.003807819,0.565966878,0.571825746,pos,ns,0.242736295,-0.0000207,0.000130951,-0.157866999,0.874664383,neg,ns,0.272764439,Lbx1,Lbx1_Intergenic_downstream,19,45222754,45222803,45222802,45222803,50,+,TTCCTGCGAAAATGGAAACATATCCAGGGTCCTTAATAAAGTGAATGACG,Distal Intergenic,19,45232684,45235812,3129,2,Lbx1-201,13009,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,30,50,16814,ENSMUSG00000025216,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
17296,cg22426280,-0.00000743,0.00000453,-1.640108228,0.101996942,loss,ns,-0.00000302,0.0000077,-0.391882029,0.695414641,neg,ns,-0.00055007,0.002254451,-0.243992902,0.807397715,neg,ns,0.092912484,-0.0000232,0.0000775,-0.299200359,0.764987664,neg,ns,0.934994879,Gm5356,Gm5356_Intergenic_upstream,8,89465240,89465289,89465240,89465241,50,+,CGTTCATCAACGTGGCAGAGGCTGGCTCAATTATCTTTGTGTCAGATGAT,Distal Intergenic,8,89186946,89187560,615,2,Gm5356-201,-277680,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,23,23,384862,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24837,cg24620208,-0.0000317,0.00000605,-5.238993743,0.000000299,loss,yes,-0.00000402,0.0000103,-0.39164146,0.695592225,neg,ns,-0.005005844,0.003009521,-1.663335843,0.097255808,neg,ns,1.012084454,-0.00016297,0.000103497,-1.574636579,0.116360322,neg,ns,0.788949958,Zfp362,Zfp362_fiveUTR,4,128794875,128794924,128794923,128794924,50,-,GAACTTCTACTCATCCTTCAAGACCCAGCTCAAGTGTTCCCTCTTCTACG,Promoter (<=1kb),4,128773104,128794888,21785,2,Zfp362-201,0,Zfp362-202;Zfp362-201;Zfp362-204;Zfp362-203,Zfp362;Zfp362;Zfp362;Zfp362,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,7,230761,ENSMUSG00000028799,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22882,cg04998702,0.000012,0.00000769,1.559772186,0.119833997,gain,ns,0.00000511,0.0000131,0.391627411,0.695602597,pos,ns,-0.008361792,0.003825599,-2.185746968,0.029582021,neg,ns,1.528972157,0.00014974,0.000131562,1.138169674,0.255928492,pos,ns,0.097207084,Meis2,Meis2_fiveUTR,2,116064808,116064857,116064808,116064809,50,-,CGCCATCAGTCTGCGCTCCAATAAACTCCTGGATGTGTCGTATATTTAAT,Promoter (<=1kb),2,115863064,116065047,201984,2,Meis2-201,190,Meis2-201;Meis2-203;Meis2-205;Meis2-206;Meis2-204;Meis2-202;Meis2-213;Meis2-210;Meis2-209,Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2,0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,11,97,17536,ENSMUSG00000027210,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
815,cg04926767,0.0000642,0.00000643,9.984706552,1.54E-20,gain,yes,0.00000427,0.0000109,0.391504603,0.695693258,pos,ns,0.009842545,0.003197994,3.077724811,0.002272168,pos,ns,2.643559601,-0.000294073,0.000109979,-2.673911445,0.007894608,neg,ns,0.114490618,Bscl2,Bscl2_Exon,19,8838226,8838275,8838226,8838227,50,+,CGTGGGCATCACAGTAAGTCATCAGGTCTGCTGCTGCCTTGGACACCTGG,Promoter (<=1kb),19,8837467,8848683,11217,1,Bscl2-210,759,Bscl2-210;Bscl2-205;Bscl2-203;Bscl2-206;Bscl2-202;Bscl2-207;Bscl2-201;Bscl2-208;Bscl2-209;Gm50139-201;Gng3-201;Hnrnpul2-201,Bscl2;Bscl2;Bscl2;Bscl2;Bscl2;Bscl2;Bscl2;Bscl2;Bscl2;Gm50139;Gng3;Hnrnpul2,0;0;0;-1053;-1098;-1115;-2244;-2260;-2260;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,14705,ENSMUSG00000071657,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27871,cg14835946,-0.00000606,0.00000225,-2.694162764,0.007441024,loss,ns,-0.0000015,0.00000382,-0.391411817,0.695761759,neg,ns,-0.002797558,0.001120374,-2.496985858,0.013043991,neg,ns,1.884589523,0.0000734,0.0000385,1.905203531,0.057678732,pos,ns,0.930406478,Ush2a,Ush2a_Intron,1,188884997,188885046,188885045,188885046,50,-,TGGTGTAAATTACAGTTTAACCATGGCTCTAATGATGTCCTTCTGCCGCG,"Intron (Ush2a-201/Ush2a, intron 60 of 70)",1,188263034,188965041,702008,1,Ush2a-201,621963,Ush2a-201,Ush2a,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,33,36,22283,ENSMUSG00000026609,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26489,cg14444723,-0.0000162,0.00000976,-1.6632253,0.097277945,loss,ns,-0.00000649,0.0000166,-0.391310532,0.695836538,neg,ns,-0.009976059,0.004859314,-2.052976684,0.04091384,neg,ns,1.388129761,0.000499885,0.000167111,2.991326727,0.003000533,pos,ns,0.743251683,Casz1,Casz1_Intergenic_upstream,4,148790855,148790904,148790903,148790904,50,-,TAATTAATTAGCGCTTAAGTACTTAGCATCCTCCTGCATCGTGTCAAACG,Distal Intergenic,4,148804429,148954889,150461,1,Casz1-202,-13574,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,14,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17762,cg22053938,-0.00000107,0.000000924,-1.153509467,0.249589913,loss,ns,-0.000000614,0.00000157,-0.391303247,0.695841916,neg,ns,-0.000431441,0.000459891,-0.938138796,0.348903418,neg,ns,0.457294775,0.0000112,0.0000158,0.706422037,0.480456314,pos,ns,0.977925486,Son,Son_Exon,16,91656307,91656356,91656355,91656356,50,+,GATCTCTGTTCAGTCTGTGGTGACAACATCGGAGCTGTCAACGATGACCG,"Exon (Son-203/Son, exon 3 of 12)",16,91647506,91679207,31702,1,Son-203,8801,Son-203;Son-204;Son-202;Son-208;Son-201;Son-205;Son-212,Son;Son;Son;Son;Son;Son;Son,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,31,20658,ENSMUSG00000022961,conserved gene and region,16,91656231,91656409,179,*,179,11,0.603351955,0.686780607,0.061452514,0.00000161,CpGisland,TRUE,U10,Tr-S
13903,cg14161220,0.0000454,0.00000437,10.38752707,6.93E-22,gain,yes,0.0000029,0.00000742,0.391289636,0.695851966,pos,ns,0.005206907,0.002173624,2.395495794,0.017190836,pos,ns,1.764703007,-0.0000159,0.0000748,-0.212752108,0.831660153,neg,ns,0.085916213,Sp9,Sp9_Intron,2,73279795,73279844,73279795,73279796,50,-,CGGCTGGGTTTGTATTTGCTGTTTTAATACAAACCCCGCCGCACTGCCTA,"Intron (Sp9-202/Sp9, intron 1 of 2)",2,73271966,73284706,12741,1,Sp9-202,7829,Cir1-201;Sp9-201;Sp9-202,Cir1;Sp9;Sp9,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,21,381373,ENSMUSG00000068859,conserved gene but different region,2,73279632,73279835,204,*,204,14,0.578431373,0.822580645,0.068627451,8.91E-09,CpGisland,TRUE,NA,NRS
26159,cg20163753,0.00000106,0.00000163,0.652076698,0.514834876,gain,ns,0.00000108,0.00000277,0.391192321,0.695923817,pos,ns,0.001545128,0.000811124,1.904922789,0.057715364,pos,ns,1.238708561,-0.0000376,0.0000279,-1.347812324,0.17870287,neg,ns,0.035849327,Lmo4,Lmo4_Exon,3,144201903,144201952,144201951,144201952,50,-,TTGAGGCACCGGCTGTGCCAATAGCTGTCCATGGCATAGAGCAGAAAGCG,Promoter (<=1kb),3,144188530,144202396,13867,2,Lmo4-203,444,Lmo4-203;Lmo4-201;Lmo4-202;Lmo4-207;Lmo4-208;Lmo4-205;Lmo4-204,Lmo4;Lmo4;Lmo4;Lmo4;Lmo4;Lmo4;Lmo4,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,18,54,16911,ENSMUSG00000028266,conserved gene and region,3,144201781,144202038,258,*,258,19,0.635658915,0.729138777,0.073643411,2.76E-12,CpGisland,TRUE,U1,Pr-A
12301,cg22938044,-0.00000948,0.0000113,-0.83807845,0.402632348,loss,ns,0.00000752,0.0000192,0.391168441,0.695941449,pos,ns,-0.018652914,0.005630657,-3.312742289,0.001033176,neg,ns,2.985825875,0.000404515,0.000193638,2.089027281,0.037520529,pos,ns,0.740365534,Fign,Fign_Intergenic_downstream,2,63878423,63878472,63878423,63878424,50,-,CGTTATCTGATGAGCCTTAAAGACTTCAGAACGAGACAGATGATTAGTTA,Distal Intergenic,2,63980447,64097988,117542,2,Fign-202,219565,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,28,84,60344,ENSMUSG00000075324,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17360,cg16096986,0.00000704,0.00000515,1.365361952,0.173129262,gain,ns,0.00000343,0.00000876,0.391137788,0.695964082,pos,ns,-0.001053233,0.002565531,-0.410532024,0.681699318,neg,ns,0.16640714,-0.0000649,0.0000882,-0.735335956,0.462690865,neg,ns,0.87615651,Me3,Me3_Exon,7,89848625,89848674,89848673,89848674,50,+,GGAGCCTTCACGGAGCAGATTCTGAGGGACATGGCCTCCTTCCACGAGCG,"Exon (Me3-202/Me3, exon 11 of 14)",7,89632703,89854359,221657,1,Me3-202,215922,Me3-202;Me3-203;Me3-201,Me3;Me3;Me3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,109264,ENSMUSG00000030621,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18014,cg13441152,-0.00000137,0.00000203,-0.674534666,0.500474172,loss,ns,0.00000135,0.00000344,0.391134969,0.695966162,pos,ns,-0.000186713,0.001008445,-0.185149798,0.853232619,neg,ns,0.06893255,0.00000362,0.0000347,0.104360645,0.916950639,pos,ns,0.963050255,Pola1,Pola1_Intron,X,93309937,93309986,93309937,93309938,50,+,CGGAAGAAAATTGCCCATGCAGCCCCCTTGCTGAGGTTATAAAAAGTACT,"Intron (Pola1-201/Pola1, intron 36 of 36)",20,93304767,93632155,327389,2,Pola1-201,322169,Pola1-201,Pola1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,59,62,18968,ENSMUSG00000006678,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22992,cg02236977,0.000000003,0.0000028,0.00107151,0.999145748,gain,ns,-0.00000186,0.00000475,-0.391124891,0.695973604,neg,ns,-0.001516219,0.001392702,-1.088688615,0.277136857,neg,ns,0.557305713,0.0000345,0.0000479,0.720588355,0.471705832,pos,ns,0.931015246,Gm13991,Gm13991_Intergenic_upstream,2,116586726,116586775,116586774,116586775,50,+,TATTACAGCTGACAAGAGGGTGATGATATTAGCCCATCATCATTCAGACG,Distal Intergenic,2,116527843,116528490,648,2,Gm13991-201,-58236,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,20,433464,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14096,cg14085358,0.0000301,0.0000041,7.338019455,1.91E-12,gain,yes,-0.00000272,0.00000696,-0.391064438,0.696018241,neg,ns,0.007011463,0.00203989,3.437177603,0.000668084,pos,ns,3.175168787,-0.000129874,0.0000702,-1.851326017,0.06507357,neg,ns,0.093217527,Evx2,Evx2_Promoter,2,74659936,74659985,74659936,74659937,50,-,CGCTCTCAGTTTGCTAGGTTGCCCCTTAGGTCCTAATCATGCAGCGCCTT,Promoter (<=1kb),2,74652991,74659557,6567,2,Evx2-201,-428,Evx2-201;Evx2-202,Evx2;Evx2,0;-517,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,9,35,14029,ENSMUSG00000001815,conserved gene and region,2,74659719,74659937,219,*,219,14,0.561643836,0.817164179,0.063926941,2.21E-08,CpGisland,TRUE,U13,Hc-P
23938,cg12178922,0.0000852,0.00000771,11.05739225,3.52E-24,gain,yes,0.00000512,0.0000131,0.391060493,0.696021154,pos,ns,0.011409589,0.003835453,2.974770061,0.003162477,pos,ns,2.499972567,0.00000197,0.000131901,0.014970874,0.988065048,pos,ns,0.667947712,Insig2,Insig2_Exon,1,121227345,121227394,121227393,121227394,50,-,GGCACCATCTGTCCCTGCCGCCTCTCTATGGTGTGTGAACATTAAATCCG,"Exon (Gm29359-201/Gm29359-201, exon 2 of 2)",1,121305893,121307318,1426,2,Insig2-206,79973,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,17,72999,ENSMUSG00000003721,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8083,cg05108018,0.0000553,0.00000572,9.659841701,1.80E-19,gain,yes,0.0000038,0.00000972,0.390998994,0.696066564,pos,ns,0.002372821,0.002848801,0.832918946,0.405531682,pos,ns,0.391975211,0.0000913,0.000098,0.931833182,0.352147882,pos,ns,0.074035715,Pax2,Pax2_Intergenic_upstream,19,44726466,44726515,44726466,44726467,50,+,CGGTGCGGAAGAATACAAAAAAATTTCATTGAGGAGGATTATAAAAGTTA,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-29530,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20258,cg22866580,0.0000562,0.0000115,4.891039351,0.00000161,gain,yes,-0.00000764,0.0000195,-0.390998566,0.696066881,neg,ns,0.005543794,0.005721097,0.969008797,0.333296204,pos,ns,0.477169632,-0.000187508,0.000196748,-0.953035081,0.341314802,neg,ns,0.198737363,Hoxc5,Hoxc5_Intron,15,102972095,102972144,102972143,102972144,50,-,CACAATAAGTCAAGGTCATAAAACAGTAATGTCAGGACGGTCTTGGTGCG,"Intron (Hoxc5-202/Hoxc5, intron 1 of 1)",15,102967443,103015676,48234,1,Hoxc5-202,4652,Hoxc10-201;Hoxc5-202;Hoxc9-202;Hoxc9-201,Hoxc10;Hoxc5;Hoxc9;Hoxc9,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,Intron,46,134,15424,ENSMUSG00000022485,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
25402,cg23534990,-0.00000191,0.00000117,-1.629779306,0.104163789,loss,ns,-0.000000779,0.00000199,-0.390870502,0.696161445,neg,ns,-0.000367451,0.000583527,-0.629707266,0.529349954,neg,ns,0.276257121,0.000000416,0.0000201,0.020725866,0.983477669,pos,ns,0.045039506,Inava,Inava_Exon,1,136234028,136234077,136234028,136234029,50,+,CGGAGGTATTTCATTTAACTTCGGCATTTGCAGCATCCCAAATGTTAAAG,Promoter (<=1kb),1,136213531,136234264,20734,2,Inava-201,187,Inava-201;Inava-203;Inava-202;Inava-204;Inava-206,Inava;Inava;Inava;Inava;Inava,0;-3739;-3718;0;-4009,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,67313,ENSMUSG00000041605,conserved gene and region,1,136233826,136234050,225,*,225,21,0.688888889,0.930851064,0.093333333,1.14E-15,CpGisland,TRUE,U3,Pr-B
25925,cg25546779,0.0000199,0.00000912,2.178366454,0.030131956,gain,ns,0.00000605,0.0000155,0.39085594,0.696172199,pos,ns,0.010625496,0.004537683,2.341612698,0.019833664,pos,ns,1.702597041,-0.000116472,0.000156051,-0.746371803,0.456008483,neg,ns,0.814008253,Card11,Card11_Intergenic_upstream,5,141028427,141028476,141028475,141028476,50,+,AATCATATAACTCTAAATTACCTTCAATTTCCCAAATGGAATTTGGCTCG,Distal Intergenic,5,140872990,141000582,127593,2,Card11-201,-27845,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,108723,ENSMUSG00000036526,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10570,cg10384361,-0.00000393,0.00000285,-1.378043923,0.169183576,loss,ns,0.0000019,0.00000485,0.390812388,0.69620436,pos,ns,-0.000506321,0.001420713,-0.35638543,0.721794372,neg,ns,0.141586509,-0.0000519,0.0000489,-1.061920134,0.289098516,neg,ns,0.933805293,Lrp10,Lrp10_Exon,14,54468144,54468193,54468144,54468145,50,+,CGTAGTCTCACCCACTTCAGCAATGGCAAGGCTGTCACTGTGGAGACACT,"Exon (Lrp10-201/Lrp10, exon 5 of 7)",14,54464137,54471497,7361,1,Lrp10-201,4007,Lrp10-201;Lrp10-203;Lrp10-204;Lrp10-202,Lrp10;Lrp10;Lrp10;Lrp10,0;2508;0;-620,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,65107,ENSMUSG00000022175,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26015,cg12675036,-0.0000095,0.00000199,-4.782343477,0.00000268,loss,ns,0.00000132,0.00000338,0.390806612,0.696208625,pos,ns,-0.000167461,0.000988953,-0.169331832,0.865646079,neg,ns,0.062659634,-0.0000197,0.000034,-0.578800178,0.563144303,neg,ns,0.953896742,C2cd5,C2cd5_Exon,6,143073733,143073782,143073781,143073782,50,+,TGGGCTGTTGTGAGTCGAGCGGCATCCATGGCTTGGAGGATGAACCAGCG,"Exon (C2cd5-201/C2cd5, exon 8 of 25)",6,143010920,143100107,89188,2,C2cd5-201,26325,C2cd5-201;C2cd5-203;C2cd5-217;C2cd5-202;C2cd5-213;C2cd5-204;C2cd5-207;C2cd5-205;C2cd5-214;C2cd5-210;C2cd5-206;C2cd5-209,C2cd5;C2cd5;C2cd5;C2cd5;C2cd5;C2cd5;C2cd5;C2cd5;C2cd5;C2cd5;C2cd5;C2cd5,0;0;0;0;0;0;0;0;0;0;6195;26359,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,8,74741,ENSMUSG00000030279,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24293,cg00386797,-0.0000137,0.00000499,-2.748323291,0.006341085,loss,ns,-0.00000331,0.00000848,-0.390790696,0.696220379,neg,ns,-0.005809618,0.002483372,-2.339406756,0.019949073,neg,ns,1.700077277,0.000163516,0.0000854,1.914639404,0.056458759,pos,ns,0.835750332,Pou3f1,Pou3f1_Intergenic_upstream,4,124520527,124520576,124520575,124520576,50,-,TGAGTTATATTCATTTCTGACAGCTTCCTGAATCACAGCCCACGTCTCCG,Distal Intergenic,4,124656807,124660655,3849,1,Pou3f1-201,-136280,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,24,85,18991,ENSMUSG00000090125,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
284,cg23191292,0.000000381,0.00000112,0.339990905,0.734093626,gain,ns,-0.000000744,0.0000019,-0.390749224,0.696251004,neg,ns,-0.0000484,0.000557864,-0.086786111,0.930897557,neg,ns,0.031098109,0.00000937,0.0000192,0.488506689,0.62553637,pos,ns,0.029040261,Arid1b,Arid1b_Exon,17,4995787,4995836,4995787,4995788,50,-,CGAAGGGTACCCCAACAGCCAGTGCAACCATTATCCGGGCTACAGCCGGC,"Exon (Arid1b-201/Arid1b, exon 1 of 19)",17,4994332,5097733,103402,1,Arid1b-204,1455,Arid1b-204;Arid1b-201;Arid1b-207;Arid1b-202;Arid1b-203;Arid1b-206,Arid1b;Arid1b;Arid1b;Arid1b;Arid1b;Arid1b,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,11,239985,ENSMUSG00000069729,conserved gene and region,17,4995241,4995884,644,*,644,73,0.723602485,0.866213403,0.113354037,7.08E-60,CpGisland,TRUE,U1,Pr-A
6826,cg23089474,0.0000146,0.00000284,5.139127754,0.000000489,gain,yes,-0.00000188,0.00000482,-0.390673235,0.696307121,neg,ns,-0.006039089,0.001411419,-4.278735896,0.0000251,neg,ns,4.600760272,0.0000945,0.0000485,1.946342334,0.052516857,pos,ns,0.046115957,Spry4,Spry4_Intron,18,38631673,38631722,38631673,38631674,50,+,CGCCCGGAGCCTCACAAAAGAACAGGATGTTGTTGATTTGTCACCAAACC,"Intron (9630014M24Rik-203/9630014M24Rik-203, intron 2 of 2)",18,38586247,38601415,15169,2,Spry4-201,-30258,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,4,24066,ENSMUSG00000024427,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
2484,cg00304629,-0.00000162,0.000000771,-2.097902023,0.03672309,loss,ns,-0.000000511,0.00000131,-0.390615797,0.696349539,neg,ns,0.000117959,0.000383505,0.307581593,0.758607268,pos,ns,0.119983001,-0.0000202,0.0000132,-1.530457217,0.126923374,neg,ns,0.018492115,Spred2,Spred2_fiveUTR,11,19924349,19924398,19924397,19924398,50,-,AGGAAGCTTTTTGCACTCCACCACCTCTGGCCGCTGGGAAGACGTCATCG,Promoter (<=1kb),11,19924375,20024026,99652,1,Spred2-202,0,Spred2-202;Spred2-201,Spred2;Spred2,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,8,13,114716,ENSMUSG00000045671,conserved gene and region,11,19924342,19924793,452,*,452,44,0.703539823,0.817763158,0.097345133,3.79E-33,CpGisland,TRUE,U1,Pr-A
18376,cg13488680,0.0000306,0.00000452,6.779098322,6.11E-11,gain,yes,-0.000003,0.00000767,-0.390464259,0.696461456,neg,ns,-0.001015558,0.002247892,-0.451782472,0.651741623,neg,ns,0.185924542,0.000287129,0.0000773,3.714240281,0.000241666,pos,ns,0.069781052,Plxnc1,Plxnc1_Promoter,10,94945107,94945156,94945155,94945156,50,+,GGTTACTGTGTAGGTGGCCTCTTTCATCTATTCATAACAAAGCTCAGCCG,Promoter (<=1kb),10,94790866,94944835,153970,2,Plxnc1-201,-272,Plxnc1-201,Plxnc1,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,5,54712,ENSMUSG00000074785,conserved gene and region,10,94945155,94945566,412,*,412,43,0.733009709,0.782785437,0.104368932,8.42E-34,CpGisland,TRUE,U3,Pr-B
27552,cg15260970,-0.00000251,0.0000016,-1.56887541,0.117697101,loss,ns,-0.00000106,0.00000272,-0.390265439,0.696608302,neg,ns,0.000233544,0.000796947,0.293048383,0.769681236,pos,ns,0.113689101,0.0000268,0.0000274,0.979379777,0.328156052,pos,ns,0.955875909,Tshz2,Tshz2_Intron,2,169830373,169830422,169830373,169830374,50,-,CGCAGCTTGTTGTAAGGCAAGATGAAAACAATACTCAGTAGATTTTCATA,"Intron (Tshz2-202/Tshz2, intron 1 of 2)",2,169633013,169913093,280081,1,Tshz2-202,197360,Tshz2-202;Tshz2-201,Tshz2;Tshz2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,21,30,228911,ENSMUSG00000047907,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8835,cg02638021,-0.0000209,0.00000341,-6.137069572,2.57E-09,loss,yes,0.00000226,0.0000058,0.390260336,0.696612071,pos,ns,0.000113776,0.001698818,0.066973728,0.946645792,pos,ns,0.023812491,-0.000109257,0.0000584,-1.87011984,0.062409476,neg,ns,0.913020338,Gpx4-ps2,Gpx4-ps2_Intergenic_downstream,10,46016401,46016450,46016449,46016450,50,-,AGACTGTCTAGACAAAAGTGCATGGAGAGATCTTTCCACTCTAAGTAGCG,Distal Intergenic,10,45875305,45876086,782,1,Gpx4-ps2-202,141145,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,3,664781,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25141,cg17472175,-0.00000727,0.00000407,-1.785592055,0.075142795,loss,ns,-0.0000027,0.00000692,-0.390259945,0.696612359,neg,ns,0.000400684,0.002027602,0.19761475,0.843476006,pos,ns,0.073927267,-0.0000184,0.0000697,-0.263881093,0.792046875,neg,ns,0.812072921,Ahdc1,Ahdc1_Exon,4,133061468,133061517,133061516,133061517,50,-,GGCCTGGTGGTGACTTCCAGTGCCGTGTGCAGCTCTCCTGACTACCTCCG,"Exon (Ahdc1-203/Ahdc1, exon 6 of 7)",4,133011506,133077863,66358,1,Ahdc1-203,49962,Ahdc1-210;Ahdc1-203;Ahdc1-204;Ahdc1-205;Ahdc1-211;Ahdc1-209;Ahdc1-206;Ahdc1-201;Ahdc1-202;Ahdc1-208,Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1,0;0;0;0;0;0;0;0;0;-4732,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,49,230793,ENSMUSG00000037692,conserved gene and region,4,133061386,133061574,189,*,189,13,0.698412698,0.586816336,0.068783069,0.000000034,CpGisland,TRUE,U10,Tr-S
8833,cg03229798,-0.00000533,0.00000169,-3.1562138,0.001755382,loss,ns,-0.00000112,0.00000287,-0.390231723,0.696633205,neg,ns,-0.000238856,0.000840596,-0.284150649,0.776484635,neg,ns,0.109867134,0.0000262,0.0000289,0.905504868,0.365901204,pos,ns,0.962496765,Pafah1b2,Pafah1b2_Exon,9,45968762,45968811,45968810,45968811,50,+,AGATCTTTGCATAGCCCCCTCCTGTCAGATGCAGAAAATCAAACATGTCG,"Exon (Pafah1b2-201/Pafah1b2, exon 6 of 6)",9,45962859,45985051,22193,2,Pafah1b2-201,16240,Pafah1b2-201;Pafah1b2-203;Pafah1b2-205;Pafah1b2-202,Pafah1b2;Pafah1b2;Pafah1b2;Pafah1b2,0;0;0;16016,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,18475,ENSMUSG00000003131,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7481,cg16948650,0.0000734,0.0000117,6.282053446,1.13E-09,gain,yes,-0.00000774,0.0000198,-0.390095492,0.696733831,neg,ns,0.023082025,0.00581426,3.969898951,0.0000894,pos,ns,4.048562231,-0.000651023,0.000199952,-3.255898151,0.001255457,neg,ns,0.336650776,Pou3f3,Pou3f3_Intron,1,42741890,42741939,42741890,42741891,50,-,CGGTGACAGCATGTCACCATTGCCCTAGTGTCCTTCTAGGTAAGGTGGAA,"Intron (Gm20646-201/Gm20646-201, intron 1 of 1)",1,42695768,42703176,7409,1,Pou3f3-201,46171,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,37,18993,ENSMUSG00000045515,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1484,cg01319629,-0.00000476,0.0000026,-1.832053786,0.067902682,loss,ns,0.00000172,0.00000441,0.390081489,0.696744175,pos,ns,0.000590913,0.001292513,0.457181356,0.647860914,pos,ns,0.188518221,-0.0000678,0.0000444,-1.524911326,0.128300738,neg,ns,0.936257955,Cdh6,Cdh6_Intergenic_upstream,15,13219734,13219783,13219734,13219735,50,-,CGAAGGAAAAGCTCTTCTGTTATATTAGAGCTGCCAAAAGAATTCAGAAC,Distal Intergenic,15,13028701,13173675,144975,2,Cdh6-201,-46108,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,5,12563,ENSMUSG00000039385,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8980,cg17356865,-0.00000137,0.00000217,-0.630698014,0.528702678,loss,ns,0.00000144,0.00000368,0.390069172,0.696753273,pos,ns,0.002316433,0.001078973,2.146886677,0.032577817,pos,ns,1.487078015,-0.0000832,0.0000371,-2.241967782,0.025670456,neg,ns,0.098649188,Ttbk1,Ttbk1_threeUTR,17,46454991,46455040,46454991,46454992,50,-,CGACGGAGCAAGTGCAAAGGAAGCAGATGTTGGTCCCTGAGTTTTATTTT,3' UTR,17,46442448,46487675,45228,2,Ttbk1-201,32635,Ttbk1-201;Ttbk1-203,Ttbk1;Ttbk1,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,7,106763,ENSMUSG00000015599,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10003,cg25955950,-0.00000327,0.00000824,-0.397545255,0.691239018,loss,ns,0.00000546,0.000014,0.389983046,0.696816893,pos,ns,-0.001345851,0.004099324,-0.328310612,0.742898469,neg,ns,0.129070537,0.000181504,0.000140975,1.287487915,0.198884643,pos,ns,0.400856486,Satb1,Satb1_Intron,17,51811705,51811754,51811753,51811754,50,-,ATCTAGAAACAGAAACACTGCAGTTTTACTGAGTGAAATTAGCAAAACCG,"Intron (Satb1-208/Satb1, intron 1 of 10)",17,51736187,51832672,96486,2,Satb1-208,20918,Satb1-208;Satb1-213;Satb1-204;Satb1-214;Satb1-203;Satb1-211;Satb1-207;Satb1-206;Satb1-202;Satb1-201;Satb1-209;Satb1-210,Satb1;Satb1;Satb1;Satb1;Satb1;Satb1;Satb1;Satb1;Satb1;Satb1;Satb1;Satb1,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,28,36,20230,ENSMUSG00000023927,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20415,cg01787584,0.0000394,0.00000535,7.363219043,1.63E-12,gain,yes,-0.00000354,0.00000909,-0.389854645,0.696911745,neg,ns,0.000483927,0.002663694,0.181675132,0.855956416,pos,ns,0.067548349,0.000216581,0.0000916,2.364315822,0.018679522,pos,ns,0.054960608,Hoxc4,Hoxc4_Exon,15,103034782,103034831,103034782,103034783,50,-,CGAAGAATATTCGCAAAATAGCTACATCCCTGAACACAGTCCGGAATATT,"Exon (Hoxc4-202/Hoxc4, exon 2 of 4)",15,103018934,103036405,17472,1,Hoxc4-202,15848,Hoxc4-202;Hoxc4-201,Hoxc4;Hoxc4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,91,15423,ENSMUSG00000075394,conserved gene and region,15,103034736,103035107,372,*,372,27,0.626344086,0.794494542,0.072580645,4.60E-17,CpGisland,TRUE,U3,Pr-B
838,cg18484878,0.0000667,0.00000586,11.39246518,2.38E-25,gain,yes,0.00000388,0.00000995,0.389788445,0.696960649,pos,ns,0.007679547,0.00291596,2.63362623,0.008871585,pos,ns,2.051998804,0.00000243,0.00010028,0.024216098,0.980695818,pos,ns,0.133941184,Nxph1,Nxph1_fiveUTR,6,8950155,8950204,8950155,8950156,50,+,CGCTCCTTGCTCTGTAAAGTGGATGTCAGGTGGATCTATGTTTCTGAAGG,5' UTR,6,8948431,8952430,4000,1,Nxph1-203,1724,Nxph1-203;Nxph1-202;Nxph1-201,Nxph1;Nxph1;Nxph1,0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,12,18231,ENSMUSG00000046178,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
20518,cg24507913,0.00000491,0.00000381,1.288195731,0.198638513,gain,ns,-0.00000253,0.00000648,-0.389773761,0.696971497,neg,ns,0.002973229,0.001898469,1.566119418,0.118340849,pos,ns,0.926865319,-0.0000673,0.0000653,-1.030630296,0.30351764,neg,ns,0.903566881,Hnrnpa1,Hnrnpa1_threeUTR,15,103245746,103245795,103245746,103245747,50,+,CGAATGGCTCCGAGCTCAGACACTCTACAGCTGAGAGTAGACACTTGTGG,3' UTR,15,103240432,103246692,6261,1,Hnrnpa1-203,5314,Hnrnpa1-201;Hnrnpa1-203;Hnrnpa1-202;Hnrnpa1-204;Hnrnpa1-205;Nfe2-201;Nfe2-205;Nfe2-210;Nfe2-208;Nfe2-207;Nfe2-206;Nfe2-202;Nfe2-204;Nfe2-209;Nfe2-203,Hnrnpa1;Hnrnpa1;Hnrnpa1;Hnrnpa1;Hnrnpa1;Nfe2;Nfe2;Nfe2;Nfe2;Nfe2;Nfe2;Nfe2;Nfe2;Nfe2;Nfe2,5314;0;5292;0;5252;9644;5670;5721;5881;5720;7357;8267;5892;7015;12608,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,2,15382,ENSMUSG00000046434,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5734,cg15476397,0.00000153,0.00000322,0.477053466,0.633660177,gain,ns,-0.00000213,0.00000546,-0.389695349,0.697029425,neg,ns,0.001037954,0.001600469,0.648531315,0.517121469,pos,ns,0.286407432,-0.0000544,0.000055,-0.987721959,0.32405913,neg,ns,0.953365334,Cdc23,Cdc23_Exon,18,34641468,34641517,34641516,34641517,50,-,CTCACCTCTGATATTGTGATAGGCAACTGCAATTTGGGAAACAATATACG,"Exon (Cdc23-201/Cdc23, exon 7 of 17)",18,34630951,34651735,20785,2,Cdc23-201,10218,Cdc23-201;Cdc23-203;Cdc23-202;Cdc23-208;Cdc23-205,Cdc23;Cdc23;Cdc23;Cdc23;Cdc23,0;0;0;-3597;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,52563,ENSMUSG00000024370,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9675,cg13721745,0.0000556,0.00000773,7.185205251,5.03E-12,gain,yes,0.00000512,0.0000131,0.389666582,0.697050678,pos,ns,0.006658058,0.003849448,1.729613559,0.084694733,pos,ns,1.072143596,-0.0000974,0.000132382,-0.735676117,0.462484076,neg,ns,0.181694373,Slc6a5,Slc6a5_Exon,7,49914687,49914736,49914687,49914688,50,+,CGACAATGTGCTTTTCCGCCCCCAGGAGGACGAGCAAGGGGATGAGAATA,"Exon (Slc6a5-201/Slc6a5, exon 3 of 16)",7,49910146,49963856,53711,1,Slc6a5-201,4541,Slc6a5-201;Slc6a5-204;Slc6a5-203;Slc6a5-202,Slc6a5;Slc6a5;Slc6a5;Slc6a5,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,5,104245,ENSMUSG00000039728,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
9835,cg16866615,-0.00000993,0.00000276,-3.595807193,0.000376147,loss,ns,-0.00000183,0.00000469,-0.389659234,0.697056107,neg,ns,0.002106596,0.001373855,1.533346466,0.126210402,pos,ns,0.898904848,-0.000131094,0.0000472,-2.774655712,0.005861355,neg,ns,0.955459246,Noct,Noct_Intergenic_upstream,3,51028884,51028933,51028932,51028933,50,+,TTTCACCAAACAACTCATTAAATCACTATAAAAGTCAACGCATATGGTCG,Distal Intergenic,3,51224447,51251644,27198,1,Noct-201,-195514,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,12457,ENSMUSG00000023087,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10732,cg15331093,-0.000022,0.00000718,-3.067346865,0.002350119,loss,ns,0.00000475,0.0000122,0.389517776,0.697160617,pos,ns,-0.000159122,0.003574837,-0.044511714,0.964525173,neg,ns,0.015686433,-0.000383443,0.000122938,-3.118987949,0.001985199,neg,ns,0.611293692,Chrnb4,Chrnb4_Exon,9,55035139,55035188,55035139,55035140,50,-,CGATCTTGGAGATGAGCAGCAGGAAGAATGTCAGTGCCAGCAGCACTGAG,"Exon (Chrnb4-201/Chrnb4, exon 5 of 6)",9,55028154,55048779,20626,2,Chrnb4-201,13591,Chrnb4-201,Chrnb4,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,108015,ENSMUSG00000035200,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1813,cg18359083,0.0000194,0.00000754,2.577116621,0.01042487,gain,ns,0.00000499,0.0000128,0.389392079,0.697253489,pos,ns,0.001636836,0.003753573,0.436074245,0.663086382,pos,ns,0.178429891,0.00013995,0.000129085,1.084165372,0.279133945,pos,ns,0.860275779,Foxp2,Foxp2_threeUTR,6,15405523,15405572,15405571,15405572,50,-,TTCTAAAACGCTTCTGATCTCACTCTTTCTTAACAGCTTTCTAAAGAACG,3' UTR,6,14901349,15441977,540629,1,Foxp2-207,504174,Foxp2-207;Foxp2-213;Foxp2-205;Foxp2-204;Foxp2-201;Foxp2-209;Foxp2-202;Foxp2-206,Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,10,65,114142,ENSMUSG00000029563,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5405,cg25060994,0.0000321,0.0000182,1.761875849,0.079075882,gain,ns,-0.000012,0.0000309,-0.389255991,0.697354042,neg,ns,0.017363905,0.009059477,1.916656351,0.056200805,pos,ns,1.250257466,-0.000754607,0.000311555,-2.42206807,0.016005724,neg,ns,0.52765361,Rbpms,Rbpms_Exon,8,33806798,33806847,33806798,33806799,50,+,CGGGGCCCACACTTCAGGGCTACTGGGGTAAAGTGCAGGCACTGTGAGCT,Promoter (<=1kb),8,33784061,33806836,22776,2,Rbpms-212,0,Rbpms-203;Rbpms-213;Rbpms-201;Rbpms-208;Rbpms-205;Rbpms-212;Rbpms-207;Rbpms-204;Rbpms-202;Rbpms-209;Rbpms-210;Rbpms-214,Rbpms;Rbpms;Rbpms;Rbpms;Rbpms;Rbpms;Rbpms;Rbpms;Rbpms;Rbpms;Rbpms;Rbpms,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,5,19663,ENSMUSG00000031586,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U5,En-Sd
13662,cg20532002,0.00000691,0.00000381,1.816868138,0.07020284,gain,ns,-0.00000252,0.00000647,-0.389163823,0.697422147,neg,ns,-0.002288623,0.001894092,-1.208295254,0.227854619,neg,ns,0.642342163,0.0000544,0.0000651,0.835413188,0.404128505,pos,ns,0.928174408,Tcf12,Tcf12_Exon,9,71869063,71869112,71869063,71869064,50,+,CGATTTTTCTGGCAAAGTCAAGACAGAACAGGAGGCAAAGCACAGGTTAA,"Exon (Tcf12-202/Tcf12, exon 15 of 21)",9,71842688,72111847,269160,2,Tcf12-202,242735,Tcf12-202;Tcf12-217;Tcf12-201;Tcf12-207;Tcf12-220;Tcf12-221;Tcf12-218;Tcf12-215;Tcf12-216;Tcf12-208;Tcf12-206,Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,12,21406,ENSMUSG00000032228,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14544,cg17439607,0.00000192,0.000000941,2.043773586,0.041820835,gain,ns,0.000000622,0.0000016,0.389149981,0.697432375,pos,ns,-0.000104698,0.000468415,-0.223515342,0.823281664,neg,ns,0.084451557,0.000000999,0.0000161,0.062032099,0.950577245,pos,ns,0.028958447,Gm50360,Gm50360_Intergenic_downstream,18,76379064,76379113,76379112,76379113,50,+,ACCGATTATTATTGCTTTTCTAATTAGTGCTTTTCCTACAGAATTAGCCG,Distal Intergenic,18,76321824,76322259,436,1,Gm50360-201,57240,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,10,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15588,cg09152943,0.0000627,0.00000808,7.762011921,1.22E-13,gain,yes,-0.00000534,0.0000137,-0.389141616,0.697438556,neg,ns,0.010574893,0.004023571,2.628235784,0.009010231,pos,ns,2.045264091,-0.000299058,0.00013837,-2.16128893,0.031438381,neg,ns,0.155460753,Asic2,Asic2_Promoter,11,81968516,81968565,81968516,81968517,50,-,CGCCACTAGAGACAAGATTAAAAGCGAGAGCGAGAGAGAAAATGCTTAAA,Promoter (<=1kb),11,80880169,81968457,1088289,2,Asic2-202,-108,Asic2-202,Asic2,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,10,11418,ENSMUSG00000020704,conserved gene but different region,11,81968478,81968941,464,*,464,31,0.586206897,0.777849881,0.066810345,2.00E-18,CpGisland,TRUE,U13,Hc-P
26985,cg21752662,-0.00000305,0.00000167,-1.831548911,0.067978141,loss,ns,0.0000011,0.00000283,0.389054785,0.697502721,pos,ns,0.000815424,0.00082988,0.982580071,0.326580383,pos,ns,0.486009906,-0.0000322,0.0000285,-1.129900505,0.259391645,neg,ns,0.956351767,Atad3a,Atad3a_Exon,4,155747323,155747372,155747371,155747372,50,-,TCTGTGGCCGGCTTAAGAACATACTTGTCAAAATACATTCTCACCAGGCG,"Exon (Atad3a-201/Atad3a, exon 14 of 16)",4,155740641,155761093,20453,2,Atad3a-201,13721,Atad3a-201;Atad3a-202;Atad3a-206;Atad3a-207;Atad3a-204;Atad3a-208;Atad3a-209,Atad3a;Atad3a;Atad3a;Atad3a;Atad3a;Atad3a;Atad3a,0;-978;0;0;8695;7395;13556,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,108888,ENSMUSG00000029036,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24275,cg05191856,0.00000226,0.00000282,0.803672856,0.422201747,gain,ns,0.00000186,0.00000479,0.388998526,0.697544294,pos,ns,0.001272109,0.001402174,0.907240342,0.364984392,pos,ns,0.437725707,0.00000691,0.0000482,0.143246918,0.886188243,pos,ns,0.940264106,Pou3f1,Pou3f1_Intron,4,124465488,124465537,124465488,124465489,50,+,CGGCTGAACAATTTTTGATGCCTGTAACCTTCGAAAGCGTTGCTAATGGC,"Intron (1700057H15Rik-202/1700057H15Rik-202, intron 2 of 3)",4,124656807,124660655,3849,1,Pou3f1-201,-191270,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,43,85,18991,ENSMUSG00000090125,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20887,cg00953859,0.0000462,0.00000325,14.20972255,1.23E-35,gain,yes,0.00000215,0.00000553,0.388948506,0.697581259,pos,ns,0.008738839,0.001619881,5.39474006,0.000000136,pos,ns,6.865020766,-0.000136616,0.0000557,-2.452369494,0.014742876,neg,ns,0.079718687,Pax6,Pax6_Exon,2,105682331,105682380,105682379,105682380,50,-,AGCGCCCCGACTGATCTTTTCAATTAGCCTTCCATGCATGATCCGGAGCG,"Exon (Pax6-221/Pax6, exon 1 of 2)",2,105668900,105697364,28465,1,Pax6-206,13431,Pax6-206;Pax6-207;Pax6-210;Pax6-214;Pax6-208;Pax6-202;Pax6-205;Pax6-225;Pax6-204;Pax6-201;Pax6-203;Pax6-224;Pax6-219;Pax6-221;Pax6-213;Pax6-211;Pax6-222;Pax6-212;Pax6-215;Pax6-223;Pax6-209;Pax6-216,Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,31,78,18508,ENSMUSG00000027168,conserved gene but different region,2,105682176,105682419,244,*,244,18,0.524590164,1.074626866,0.073770492,1.12E-11,CpGisland,TRUE,NA,NRS
3792,cg03810913,-0.00000798,0.0000017,-4.69319388,0.00000404,loss,ns,-0.00000112,0.00000289,-0.38883661,0.697663951,neg,ns,0.000508534,0.000846689,0.600614083,0.548535905,pos,ns,0.26079494,-0.0000101,0.0000291,-0.347356039,0.728559562,neg,ns,0.062722086,Zmiz1,Zmiz1_fiveUTR,14,25459175,25459224,25459175,25459176,50,+,CGCGGGGCCCTTTGGAAATAGAATAGCCAATGTAATCTGACACTTCAACT,Promoter (<=1kb),14,25459185,25538492,79308,1,Zmiz1-206,0,Zmiz1-206;Zmiz1-208;Zmiz1-201;Zmiz1-202,Zmiz1;Zmiz1;Zmiz1;Zmiz1,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,15,328365,ENSMUSG00000007817,conserved gene but different region,14,25458848,25459178,331,*,331,32,0.628398792,1.139537386,0.096676737,3.78E-24,CpGisland,TRUE,NA,NRS
2729,cg07171305,0.0000325,0.00000876,3.709457651,0.000246077,gain,ns,0.00000578,0.0000149,0.388700354,0.697764651,pos,ns,0.007522328,0.004358305,1.72597571,0.085348181,pos,ns,1.068805728,-0.000332615,0.000149882,-2.219186029,0.027197756,neg,ns,0.498547683,Klhl14,Klhl14_Intron,18,21625501,21625550,21625549,21625550,50,+,GGCAACCACTGAAAGGAGTGACTACCCACCCATCAAGAGCTGGCAATTCG,"Intron (Klhl14-201/Klhl14, intron 1 of 7)",18,21550377,21652368,101992,2,Klhl14-201,26818,Klhl14-201;Klhl14-202,Klhl14;Klhl14,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,38,225266,ENSMUSG00000042514,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10520,cg22316209,0.00000368,0.00000641,0.573244177,0.566894967,gain,ns,0.00000423,0.0000109,0.388650429,0.697801549,pos,ns,0.000123566,0.003191359,0.038719035,0.96913932,pos,ns,0.013613786,-0.0000437,0.000109751,-0.398545549,0.690502455,neg,ns,0.676891876,Gm12468,Gm12468_Intergenic_downstream,4,53976443,53976492,53976443,53976444,50,+,CGGCCACTTGGATTTAATTATAGCAACATTTGCAGACAATAAGTGGGTCT,Distal Intergenic,4,53877925,53878328,404,1,Gm12468-201,98518,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,4,670124,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12365,cg17921193,0.0000008,0.00000141,0.567245206,0.570958125,gain,ns,0.000000932,0.0000024,0.388597609,0.697840588,pos,ns,0.000763128,0.000702366,1.086511434,0.278096894,pos,ns,0.555803861,0.00000311,0.0000242,0.128854162,0.897556605,pos,ns,0.030765715,Smad6,Smad6_Promoter,9,64022088,64022137,64022136,64022137,50,+,TTGTTGCGCAAACAAGGTTTCAAGTTTCTTAACTCTTAAAGGAGAACACG,Promoter (<=1kb),9,63953076,64022059,68984,2,Smad6-201,-29,Smad6-201;Smad6-203,Smad6;Smad6,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,4,19,17130,ENSMUSG00000036867,conserved gene and region,9,64022136,64022309,174,*,174,22,0.752873563,0.920634921,0.126436782,1.68E-19,CpGisland,TRUE,NA,NRS
19963,cg12260252,-0.000000536,0.0000009,-0.595531082,0.55192304,loss,ns,0.000000594,0.00000153,0.388550932,0.697875087,pos,ns,0.001048659,0.000447862,2.341477432,0.019840724,pos,ns,1.702442479,-0.0000249,0.0000154,-1.619351452,0.106388508,neg,ns,0.97205452,Clpb,Clpb_Intron,7,101775250,101775299,101775250,101775251,50,-,CGATTGAAACAATTAGCACTCTGGAAAGGGCCATAAACTAGCAGGACTAT,"Intron (Clpb-201/Clpb, intron 9 of 15)",7,101663633,101790168,126536,1,Clpb-201,111617,Clpb-201;Clpb-202;Clpb-211;Clpb-208;Clpb-209,Clpb;Clpb;Clpb;Clpb;Clpb,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,21,21,20480,ENSMUSG00000001829,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21372,cg06789578,-0.0000113,0.00000315,-3.581349197,0.000396707,loss,ns,0.00000208,0.00000535,0.388386704,0.697996473,pos,ns,0.002070218,0.001566226,1.321787986,0.187213326,pos,ns,0.72766324,-0.00009,0.0000539,-1.670024757,0.095923822,neg,ns,0.914974195,Cacna2d2,Cacna2d2_Intron,9,107519031,107519080,107519031,107519032,50,-,CGGTATGATGATGAGACACAATATTTTCATTCAAACAGCCATTGAATAAA,"Intron (Cacna2d2-201/Cacna2d2, intron 22 of 37)",9,107399612,107529343,129732,1,Cacna2d2-201,119419,Cacna2d2-201;Cacna2d2-205;Cacna2d2-202;Cacna2d2-203;Cacna2d2-204;Cacna2d2-208;Cacna2d2-210,Cacna2d2;Cacna2d2;Cacna2d2;Cacna2d2;Cacna2d2;Cacna2d2;Cacna2d2,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,18,56808,ENSMUSG00000010066,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12838,cg25269710,0.0000153,0.00000609,2.503930692,0.012795813,gain,ns,0.00000402,0.0000103,0.388353198,0.698021239,pos,ns,0.001242464,0.003031962,0.409788885,0.682243847,pos,ns,0.166060372,0.000134666,0.000104269,1.291526506,0.1974833,pos,ns,0.139045492,Ebf2,Ebf2_Intron,14,67272215,67272264,67272215,67272216,50,-,CGCTACTGGGTTTTGTTCAACGGAGAGCTCTGCATGGTTGCATTTTAACA,"Intron (Ebf2-201/Ebf2, intron 7 of 16)",14,67233292,67429777,196486,1,Ebf2-201,38923,Ebf2-201;Ebf2-203;Ebf2-202,Ebf2;Ebf2;Ebf2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,21,13592,ENSMUSG00000022053,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
1037,cg06320218,-0.0000137,0.00000435,-3.137061981,0.001870357,loss,ns,-0.00000287,0.0000074,-0.388255122,0.698093735,neg,ns,-0.002611334,0.002166715,-1.205204613,0.229043509,neg,ns,0.640082011,0.0000767,0.0000745,1.029820552,0.303897057,pos,ns,0.918207339,Gm14485,Gm14485_Intergenic_upstream,X,11098101,11098150,11098149,11098150,50,+,CTGCTCCCATCAGCCCTGTGGGGTAAGTGGTAGGTAATTGTTTCCCATCG,Distal Intergenic,20,11020515,11021007,493,2,Gm14485-201,-77094,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,9,547156,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22233,cg22322375,-0.00000099,0.00000111,-0.893748604,0.372149738,loss,ns,-0.00000073,0.00000188,-0.388237718,0.6981066,neg,ns,0.001283249,0.000551112,2.328471467,0.020529917,pos,ns,1.687612809,-0.00000248,0.000019,-0.130619853,0.896160758,neg,ns,0.969046975,Usp47,Usp47_threeUTR,7,112110401,112110450,112110401,112110402,50,-,CGGACAAATGTGCACATAGCCGCTAGTAAAACTAGCCTCAAACAGGATGC,3' UTR,7,112023504,112111384,87881,1,Usp47-201,86897,Usp47-201;Usp47-206;Usp47-202,Usp47;Usp47;Usp47,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,4,74996,ENSMUSG00000059263,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2789,cg05191666,-0.0000163,0.00000719,-2.265259339,0.024186594,loss,ns,0.00000474,0.0000122,0.388210594,0.698126651,pos,ns,-0.001375154,0.003580011,-0.384119954,0.701152884,neg,ns,0.154187275,-0.0000443,0.000123116,-0.359787092,0.719251334,neg,ns,0.632678097,Klhl14,Klhl14_Intergenic_upstream,18,21729154,21729203,21729154,21729155,50,-,CGTATGCTGGGAGGAAAGTATTATTTTTCTAAATGGAAGGTGTCAGATGG,Distal Intergenic,18,21550379,21654718,104340,2,Klhl14-202,-74485,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,38,225266,ENSMUSG00000042514,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25223,cg06410866,-0.0000145,0.00000944,-1.539975804,0.124586348,loss,ns,0.00000623,0.000016,0.388132947,0.698184049,pos,ns,0.005183942,0.004700423,1.102867175,0.270940279,pos,ns,0.567126426,-0.000290591,0.000161647,-1.797686078,0.073199775,neg,ns,0.676951879,Tnmd,Tnmd_fiveUTR,X,133851078,133851127,133851126,133851127,50,+,ACATATTTGAGCCATATAAATTCAGCTTCTCCTCTGGCATCTGTTAGCCG,Promoter (<=1kb),20,133850980,133865577,14598,1,Tnmd-201,98,Tnmd-201,Tnmd,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,1,64103,ENSMUSG00000031250,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15961,cg12335662,-0.00000107,0.0000015,-0.713639923,0.475986783,loss,ns,-0.000000988,0.00000254,-0.388091273,0.698214855,neg,ns,0.000394288,0.000745565,0.528843837,0.597292221,pos,ns,0.223813142,-0.00000823,0.0000256,-0.32089795,0.74850395,neg,ns,0.064079763,Tmem131l,Tmem131l_Exon,3,84039317,84039366,84039365,84039366,50,-,GAGTGGGCAGCAGGAGTTCCCCTTCTTCTGCCTGCCACAGCTCCACCACG,Promoter (<=1kb),3,83897655,84040175,142521,2,Tmem131l-202,809,Tmem131l-202;Tmem131l-203;Tmem131l-201;Tmem131l-206;Tmem131l-204;Tmem131l-205,Tmem131l;Tmem131l;Tmem131l;Tmem131l;Tmem131l;Tmem131l,0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,229473,ENSMUSG00000033767,conserved gene and region,3,84039365,84039895,531,*,531,56,0.696798493,0.873150106,0.105461394,3.95E-44,CpGisland,TRUE,U1,Pr-A
22519,cg02808705,0.00000394,0.00000371,1.061401095,0.289333855,gain,ns,-0.00000245,0.00000631,-0.388053527,0.698242759,neg,ns,-0.00020918,0.001847194,-0.113242311,0.909911751,neg,ns,0.041000726,-0.000097,0.0000635,-1.526850876,0.127817715,neg,ns,0.925680455,Wwox,Wwox_Intron,8,114907113,114907162,114907161,114907162,50,-,CATCTGACTTGATCGGAGTTCTATGGATTTTCACTAAAATAGAATCATCG,"Intron (Wwox-201/Wwox, intron 8 of 8)",8,114439655,115352708,913054,1,Wwox-201,467458,Wwox-201;Wwox-204;Wwox-209,Wwox;Wwox;Wwox,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,32,32,80707,ENSMUSG00000004637,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2381,cg12065837,0.00000902,0.0000022,4.09233193,0.0000545,gain,ns,-0.00000145,0.00000374,-0.387746384,0.698469829,neg,ns,0.002068336,0.001096868,1.885674528,0.060273682,pos,ns,1.219872279,-0.0000787,0.0000377,-2.086533606,0.037747246,neg,ns,0.055481331,Tfap2b,Tfap2b_Intron,1,19221803,19221852,19221803,19221804,50,+,CGTGATAAATGGCTCTTTCATTTGAAGATCTCCAGAGCTCGTTTACGGCT,"Intron (Tfap2b-201/Tfap2b, intron 3 of 6)",1,19208914,19238576,29663,1,Tfap2b-201,12889,Tfap2b-201;Tfap2b-204;Tfap2b-202;Tfap2b-203,Tfap2b;Tfap2b;Tfap2b;Tfap2b,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,40,21419,ENSMUSG00000025927,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13246,cg25296072,0.000097,0.0000145,6.708997788,9.31E-11,gain,yes,-0.00000952,0.0000246,-0.387602046,0.698576547,neg,ns,0.030068342,0.007197093,4.177845586,0.0000383,pos,ns,4.416719502,-0.000872203,0.000247507,-3.523948449,0.000489204,neg,ns,0.249903739,Nlgn2,Nlgn2_Intron,11,69836096,69836145,69836096,69836097,50,-,CGGGTGGCTCTCTGCAGGTGTCAATTTATTCCAGAGATGAGGACACAGGA,"Intron (Nlgn2-202/Nlgn2, intron 1 of 7)",11,69823122,69837784,14663,2,Nlgn2-202,1639,Nlgn2-201;Nlgn2-202;Nlgn2-203;Tmem256-203;Tmem256-201;Tmem256-205;Tmem256-204;Tmem256-202,Nlgn2;Nlgn2;Nlgn2;Tmem256;Tmem256;Tmem256;Tmem256;Tmem256,0;0;0;-2369;-2379;-2410;-2418;-2493,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,17,216856,ENSMUSG00000051790,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
21632,cg15432120,-0.00000111,0.00000187,-0.593417904,0.55333422,loss,ns,-0.00000123,0.00000318,-0.387550109,0.698614949,neg,ns,-0.001365559,0.000930328,-1.467825918,0.143165373,neg,ns,0.844162011,0.00000675,0.000032,0.211062641,0.832977068,pos,ns,0.953877652,Degs2,Degs2_Exon,12,108683343,108683392,108683343,108683344,50,-,CGTAGAACCCCGTCTGTGGCAAAGAGCCCCGAAGCTAAGAGCCCCCTTCA,"Exon (Evl-201/Evl, exon 11 of 14)",12,108678711,108692183,13473,2,Degs2-203,8791,Degs2-203;Degs2-202;Evl-202;Evl-201;Evl-203;Evl-206;Evl-204;Evl-205;Evl-207,Degs2;Degs2;Evl;Evl;Evl;Evl;Evl;Evl;Evl,0;18905;0;0;0;0;0;0;-2705,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,70059,ENSMUSG00000021263,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22925,cg17239331,0.0000687,0.00000674,10.19560328,3.06E-21,gain,yes,-0.00000444,0.0000114,-0.387478775,0.698667694,neg,ns,0.005090961,0.003353655,1.518033652,0.130025047,pos,ns,0.88597298,-0.0000694,0.000115332,-0.601535853,0.547922776,neg,ns,0.11178836,Gpr88,Gpr88_Exon,3,116252459,116252508,116252459,116252460,50,+,CGTTGCTGGTGGTCTGCAGCTTTCGGAAGGACGACACGAGATAGATGACC,Promoter (<=1kb),3,116249654,116253503,3850,2,Gpr88-201,995,Gpr88-201;Gpr88-202;Gpr88-203,Gpr88;Gpr88;Gpr88,0;581;955,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,64378,ENSMUSG00000068696,conserved gene and region,3,116251524,116252638,1115,*,1115,122,0.713901345,0.861151029,0.10941704,1.54E-97,CpGisland,TRUE,U3,Pr-B
23577,cg11457144,0.0000235,0.00000963,2.442547937,0.015142182,gain,ns,-0.00000634,0.0000164,-0.387473484,0.698671606,neg,ns,0.006393668,0.0047939,1.333708932,0.183278341,pos,ns,0.736888856,-0.0000551,0.000164862,-0.334427712,0.738282975,neg,ns,0.851563065,Gli2,Gli2_Intron,1,119047428,119047477,119047476,119047477,50,-,TTAATGTCAAGTATGCCAAAGATACGCTGGAAAATCATTACCATTCATCG,"Intron (Gli2-201/Gli2, intron 1 of 13)",1,118834132,119053619,219488,2,Gli2-201,6142,Gli2-201;Gli2-203;Gli2-204;Gli2-205;Gli2-206;Gli2-208;Gli2-207;Gli2-209,Gli2;Gli2;Gli2;Gli2;Gli2;Gli2;Gli2;Gli2,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,4,14633,ENSMUSG00000048402,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
348,cg25194110,0.00000221,0.00000201,1.098701126,0.272751024,gain,ns,-0.00000132,0.00000341,-0.387450474,0.69868862,neg,ns,0.000363113,0.001000374,0.362977617,0.716868973,pos,ns,0.144560216,-0.0000433,0.0000344,-1.257394235,0.209557352,neg,ns,0.042702233,Zfhx4,Zfhx4_Promoter,3,5218978,5219027,5219026,5219027,50,-,GAGTATCGATTATCTTTCCAGCCTGATCTTGCACAATCTTTGATATTTCG,Promoter (<=1kb),3,5218526,5413165,194640,1,Zfhx4-203,452,Zfhx4-203;Zfhx4-202;Zfhx4-201;Zfhx4-204,Zfhx4;Zfhx4;Zfhx4;Zfhx4,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,10,77,80892,ENSMUSG00000025255,mapped to different genes,3,5219026,5219156,131,*,131,9,0.625954199,1.314381271,0.06870229,0.00000851,CpGisland,TRUE,U1,Pr-A
4228,cg12657315,-0.000000731,0.00000311,-0.23528326,0.814144235,loss,ns,-0.00000205,0.00000528,-0.387429253,0.698704311,neg,ns,-0.002611205,0.001546793,-1.688141303,0.092389797,neg,ns,1.034375987,-0.00000701,0.0000532,-0.131859895,0.89518065,neg,ns,0.912010301,Trio,Trio_threeUTR,15,27744050,27744099,27744050,27744051,50,-,CGGCTCGGAACACCAGAAACATGTTCTGCTGGTTGCTGGCCAGAATTTGA,3' UTR,15,27730651,28025848,295198,2,Trio-201,281749,Trio-212;Trio-201;Trio-208;Trio-206;Trio-214;Trio-211;Trio-205,Trio;Trio;Trio;Trio;Trio;Trio;Trio,-1727;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,8,11,223435,ENSMUSG00000022263,conserved gene and region,15,27743899,27744056,158,*,158,12,0.64556962,0.736024845,0.075949367,4.47E-08,CpGisland,TRUE,U10,Tr-S
694,cg23882198,-0.00000181,0.00000553,-0.326592479,0.74419652,loss,ns,-0.00000364,0.0000094,-0.387368871,0.69874896,neg,ns,0.004126241,0.002753791,1.498385568,0.13505068,pos,ns,0.869503224,-0.000157561,0.0000947,-1.663745345,0.097173838,neg,ns,0.949687603,Wdr13,Wdr13_threeUTR,X,8128157,8128206,8128205,8128206,50,-,TCACTTTCTTGCCTGTGGAGATGTTCATGACATGCACGTTGTGCTTGGCG,3' UTR,20,8123301,8132808,9508,2,Wdr13-201,4602,Wdr13-201;Wdr13-207;Wdr13-205;Wdr13-203;Wdr13-202;Wdr13-206;Wdr13-208;Wdr13-210;Wdr13-209;Wdr13-204,Wdr13;Wdr13;Wdr13;Wdr13;Wdr13;Wdr13;Wdr13;Wdr13;Wdr13;Wdr13,0;0;0;0;0;0;0;4639;4305;4686,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,73447,ENSMUSG00000031166,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19528,cg21362567,0.0000507,0.00000976,5.194488313,0.000000373,gain,yes,0.00000642,0.0000166,0.387363401,0.698753006,pos,ns,0.004823206,0.004856459,0.99315277,0.321410076,pos,ns,0.492940512,0.000146789,0.000167013,0.878903687,0.380134238,pos,ns,0.635980744,Gm12687,Gm12687_Intergenic_downstream,4,99574177,99574226,99574225,99574226,50,-,CTTGTCTTTGTCAAAGGGATACAAAAGCCTGCCCGCTCGGGGCCCTTACG,Distal Intergenic,4,99615817,99616522,706,2,Gm12687-201,42345,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,7,100417847,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2167,cg04760427,0.00000522,0.0000041,1.273845263,0.203672478,gain,ns,-0.0000027,0.00000697,-0.387349453,0.698763319,neg,ns,-0.001247708,0.002041266,-0.611242231,0.541487175,neg,ns,0.266411825,-0.00000797,0.0000702,-0.113512682,0.909697586,neg,ns,0.91990691,Cyp7b1,Cyp7b1_Intron,3,18165340,18165389,18165340,18165341,50,+,CGTTGCTGGTGTGTGCGAAATAGTATAAATGAAACATACATAATGTACGG,"Intron (Cyp7b1-201/Cyp7b1, intron 1 of 5)",3,18071950,18243338,171389,2,Cyp7b1-201,77949,Cyp7b1-201,Cyp7b1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,17,13123,ENSMUSG00000039519,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21547,cg04340950,0.0000503,0.00000782,6.428909252,4.85E-10,gain,yes,-0.00000514,0.0000133,-0.38717086,0.698895386,neg,ns,-0.008213699,0.003892563,-2.110100504,0.0356507,neg,ns,1.447931937,0.000629001,0.000133865,4.698770907,0.00000394,pos,ns,0.544963586,Atxn7l2,Atxn7l2_Exon,3,108209628,108209677,108209628,108209629,50,-,CGAAAGGCCACGAGGCCAGGTGCTCCCTGGGGCCCAGAAGACAAAGATCA,Promoter (<=1kb),3,108202222,108210486,8265,2,Atxn7l2-202,809,Atxn7l2-202;Atxn7l2-201;Atxn7l2-206;Atxn7l2-203;Atxn7l2-204;Atxn7l2-205;Atxn7l2-207;Sypl2-201,Atxn7l2;Atxn7l2;Atxn7l2;Atxn7l2;Atxn7l2;Atxn7l2;Atxn7l2;Sypl2,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,72522,ENSMUSG00000048997,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U4,Pr-F
14524,cg12094196,0.00000728,0.00000208,3.4977303,0.000537861,gain,ns,0.00000137,0.00000354,0.387091408,0.698954141,pos,ns,0.002759911,0.00103625,2.663363455,0.008140585,pos,ns,2.089344385,-0.000047,0.0000356,-1.319958051,0.187822879,neg,ns,0.947856643,Clock,Clock_Exon,5,76262685,76262734,76262733,76262734,50,-,AATTGTGTAAACTCTTCATTACTAAGGAATGTAGGTTTCCAGTCCTGTCG,"Exon (Clock-205/Clock, exon 7 of 23)",5,76209868,76304792,94925,2,Clock-205,42058,Clock-205;Clock-201;Clock-204;Clock-206;Clock-202,Clock;Clock;Clock;Clock;Clock,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,12753,ENSMUSG00000029238,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24274,cg18467214,-0.000029,0.00000596,-4.877152246,0.00000172,loss,yes,-0.00000392,0.0000101,-0.387047273,0.698986781,neg,ns,-0.004476426,0.002964263,-1.510131406,0.132028482,neg,ns,0.879332369,0.0000156,0.000101941,0.152838551,0.878625028,pos,ns,0.920779958,Pou3f1,Pou3f1_Intron,4,124465404,124465453,124465452,124465453,50,-,TCTCAAAGCCATCAGCCTTGATTGAAGGCTAATGAAAAAGCTGTCCTGCG,"Intron (1700057H15Rik-202/1700057H15Rik-202, intron 2 of 3)",4,124656807,124660655,3849,1,Pou3f1-201,-191403,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,43,85,18991,ENSMUSG00000090125,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11696,cg01990759,0.0000409,0.00000345,11.84141181,6.12E-27,gain,yes,-0.00000227,0.00000586,-0.386964188,0.699048227,neg,ns,0.001259752,0.001717426,0.73351149,0.463800872,pos,ns,0.333668439,0.0000277,0.0000591,0.469504941,0.639038815,pos,ns,0.087434142,Spock2,Spock2_Exon,10,60106563,60106612,60106563,60106564,50,-,CGAGACCCCCGGCAATTTCATGGAGGACGAGCAATGGCTGTCGTCCATCT,Promoter (<=1kb),10,60106219,60127338,21120,1,Spock2-202,344,Spock2-202;Spock2-201;Spock2-203,Spock2;Spock2;Spock2,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,94214,ENSMUSG00000058297,conserved gene and region,10,60106466,60107061,596,*,596,60,0.708053691,0.803667745,0.100671141,6.32E-46,CpGisland,TRUE,U3,Pr-B
4741,cg25380047,0.000000739,0.00000678,0.109102657,0.913191655,gain,ns,-0.00000445,0.0000115,-0.386934553,0.699070144,neg,ns,-0.006589738,0.003372584,-1.953913853,0.051610411,neg,ns,1.287262679,-0.0000407,0.000115983,-0.351305339,0.725597934,neg,ns,0.767106862,Otof,Otof_Exon,5,30373627,30373676,30373675,30373676,50,-,CCAGGGGCTGGCATGTCCATGGGGAACATGTCCACCCACAGCTCCAGGCG,"Exon (Otof-202/Otof, exon 42 of 47)",5,30367062,30461902,94841,2,Otof-202,88226,Otof-202;Otof-201;Otof-204;Otof-205,Otof;Otof;Otof;Otof,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,83762,ENSMUSG00000062372,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4828,cg03979344,-0.0000301,0.0000101,-2.971880726,0.003191546,loss,ns,0.00000666,0.0000172,0.386843352,0.699137595,pos,ns,0.010114802,0.005045164,2.00485086,0.045848195,pos,ns,1.338677758,-0.000363768,0.000173503,-2.0966115,0.03683814,neg,ns,0.773380063,Stimate,Stimate_threeUTR,14,30871480,30871529,30871528,30871529,50,-,GGTGGCCCTGTTGAATCCCATTGAAAACCCAGACTTGAAGCTGGCCATCG,3' UTR,14,30825590,30877210,51621,1,Stimate-201,45890,Stimate-201;Stimate-203;Stimate-206;Stimate-204;Stimate-205;Stimate-202,Stimate;Stimate;Stimate;Stimate;Stimate;Stimate,0;0;0;0;0;-826,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,1,69179,ENSMUSG00000006526,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22096,cg15977571,-0.0000592,0.000011,-5.357333803,0.000000165,loss,yes,-0.00000726,0.0000188,-0.386834802,0.699143918,neg,ns,-0.014791044,0.005499205,-2.689669389,0.007539588,neg,ns,2.122652398,-0.0000454,0.000189117,-0.239963246,0.810517345,neg,ns,0.763141018,Lyve1,Lyve1_fiveUTR,7,110863034,110863083,110863034,110863035,50,+,CGCCCAGGCTGTACTTTGTGGATGGCCTTCTGGAAAATTTAGCTAATGCT,Promoter (<=1kb),7,110850607,110863239,12633,2,Lyve1-201,156,Lyve1-201;Lyve1-202,Lyve1;Lyve1,0;-81,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,1,114332,ENSMUSG00000030787,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7945,cg25279873,-0.00000401,0.000006,-0.667718871,0.504809841,loss,ns,-0.00000394,0.0000102,-0.386809868,0.69916236,neg,ns,-0.002961296,0.002987361,-0.991275028,0.322324394,neg,ns,0.491706826,-0.000132652,0.000102735,-1.291207439,0.197593748,neg,ns,0.907269522,Pax5,Pax5_Intron,4,44657003,44657052,44657051,44657052,50,-,TCTCACTGTCCACTGTCTCTGATAGAATTCAATTGATCAATCATGTTTCG,"Intron (Pax5-201/Pax5, intron 5 of 9)",4,44524757,44710487,185731,2,Pax5-201,53435,Pax5-201;Pax5-202;Pax5-203;Pax5-204;Pax5-205;Pax5-207;Pax5-206;Pax5-209;Pax5-210;Pax5-212;Pax5-213;Pax5-214;Pax5-215;Pax5-211,Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,19,45,18507,ENSMUSG00000014030,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27890,cg10415632,0.0000184,0.000012,1.53555416,0.125667732,gain,ns,0.00000786,0.0000203,0.38666893,0.699266602,pos,ns,0.035677319,0.005953163,5.993002166,5.72E-09,pos,ns,8.242936363,-0.000490526,0.000204729,-2.3959777,0.017168672,neg,ns,0.813628175,Prox1,Prox1_Intron,1,190148535,190148584,190148535,190148536,50,-,CGATTAAAAAGACAACTGAAGGACCCCCATTATCTGATCTTCTGGTTGCC,"Intron (Prox1-202/Prox1, intron 3 of 4)",1,190118035,190170714,52680,2,Prox1-202,22130,Prox1-202;Prox1-201;Prox1-203,Prox1;Prox1;Prox1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,59,19130,ENSMUSG00000010175,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9169,cg06001189,-0.00000881,0.00000374,-2.354798974,0.019155935,loss,ns,0.00000246,0.00000635,0.386659513,0.699273567,pos,ns,-0.001197948,0.001861329,-0.643598234,0.520311827,neg,ns,0.283736302,0.0000447,0.000064,0.697933028,0.485742239,pos,ns,0.91024857,Gm13471,Gm13471_Intergenic_upstream,2,47334733,47334782,47334733,47334734,50,-,CGGAGTGCAAAACTGCTGAGAAGATGAACCATGATAATTAGAATTAATGG,Distal Intergenic,2,48140146,48140578,433,1,Gm13471-201,-805413,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,9,10,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19942,cg02515765,-0.00000303,0.00000191,-1.584363385,0.114130619,loss,ns,-0.00000126,0.00000325,-0.386653059,0.699278341,neg,ns,0.001041808,0.000952138,1.094178048,0.274726347,pos,ns,0.561099688,0.0000452,0.0000327,1.380970482,0.168282748,pos,ns,0.950950535,Traf6,Traf6_Exon,2,101697173,101697222,101697221,101697222,50,+,CAAGGAGAATATGACAGCCACCTCCCTTGGCCCTTCCAGGGTACAATACG,"Exon (Traf6-201/Traf6, exon 8 of 8)",2,101678440,101701669,23230,1,Traf6-201,18733,Traf6-201,Traf6,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,22034,ENSMUSG00000027164,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8368,cg07434287,-0.0000332,0.0000111,-2.999498293,0.002923439,loss,ns,0.00000726,0.0000188,0.386651251,0.699279679,pos,ns,-0.004599082,0.005501785,-0.83592533,0.403840752,neg,ns,0.393789858,-0.0000944,0.000189206,-0.499188633,0.618000567,neg,ns,0.822362366,Zeb2,Zeb2_Intron,2,45058380,45058429,45058380,45058381,50,-,CGTCGATTGCGGCGGCTTTCTGAGGTGAGAGAAACTGACAGCACTAACTC,"Intron (Zeb2-212/Zeb2, intron 3 of 10)",2,44983632,45117395,133764,2,Zeb2-212,58966,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-218;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17564,cg05629639,-0.00000203,0.000000912,-2.222189382,0.026992003,loss,ns,0.000000599,0.00000155,0.386558012,0.699348644,pos,ns,0.000745677,0.000453693,1.643571108,0.101278606,pos,ns,0.994482287,-0.0000302,0.0000156,-1.936976138,0.053656625,neg,ns,0.975041999,Paxbp1,Paxbp1_Exon,16,91030447,91030496,91030495,91030496,50,+,AACTCCGAAGATTCATCTTTAATATCATCTTGTCGTCTTTGGACAAGGCG,"Exon (Paxbp1-202/Paxbp1, exon 8 of 18)",16,91014037,91044543,30507,2,Paxbp1-202,14047,Paxbp1-202;Paxbp1-201;Paxbp1-207;Paxbp1-206;Paxbp1-205;Paxbp1-203;Paxbp1-204,Paxbp1;Paxbp1;Paxbp1;Paxbp1;Paxbp1;Paxbp1;Paxbp1,0;0;0;0;-2809;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,7,67367,ENSMUSG00000022974,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3994,cg21586116,-0.00000239,0.00000237,-1.007890855,0.31429291,loss,ns,0.00000156,0.00000403,0.386427807,0.699444957,pos,ns,-0.001141491,0.001180955,-0.96658295,0.334506018,neg,ns,0.475596065,3.51E-08,0.0000406,0.000864595,0.999310709,pos,ns,0.941730901,Fancl,Fancl_Intergenic_upstream,11,26323644,26323693,26323644,26323645,50,+,CGTTCTAGCTCCCCTGGGATTTGAGTGGAAGGAGGTCTCAAAGATCTGTA,Distal Intergenic,11,26386135,26471876,85742,1,Fancl-201,-62442,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,67030,ENSMUSG00000004018,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15318,cg06579027,-0.00000743,0.00000506,-1.469330551,0.142757232,loss,ns,0.00000332,0.0000086,0.38638656,0.699475469,pos,ns,0.001033578,0.002518181,0.410446483,0.681761989,pos,ns,0.166367216,-0.000215209,0.0000866,-2.485092588,0.013478952,neg,ns,0.914951473,Cacna1i,Cacna1i_Exon,15,80321244,80321293,80321292,80321293,50,-,GCCCTGGGGATTTTTGGCAAGAAGTGCTACCTCGGGGACACATGGAACCG,"Exon (Cacna1i-202/Cacna1i, exon 4 of 37)",15,80287238,80398279,111042,1,Cacna1i-202,34006,Cacna1i-202;Cacna1i-205,Cacna1i;Cacna1i,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,11,239556,ENSMUSG00000022416,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10374,cg22591675,0.0000612,0.0000171,3.571378479,0.000411496,gain,ns,0.0000112,0.0000291,0.386252504,0.699574637,pos,ns,-0.002627193,0.008524393,-0.308197076,0.758139363,neg,ns,0.120250954,0.000731431,0.000293153,2.495047989,0.013114,pos,ns,0.712714227,Npas3,Npas3_Intron,12,53255188,53255237,53255188,53255189,50,+,CGATTTGTTATTCTGCTCCACTTGAGAGCTGAACTAAATAACACTTGGTC,"Intron (Npas3-204/Npas3, intron 1 of 10)",12,53248157,54069532,821376,1,Npas3-204,7031,Npas3-204;Npas3-201;Npas3-202;Npas3-203,Npas3;Npas3;Npas3;Npas3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,83,103,27386,ENSMUSG00000021010,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
26262,cg10762011,-0.000000331,0.0000042,-0.07872572,0.93730158,loss,ns,0.00000275,0.00000713,0.386246133,0.69957935,pos,ns,0.000956037,0.002089464,0.457551369,0.647595299,pos,ns,0.188696313,-0.00000415,0.0000719,-0.05771093,0.954016069,neg,ns,0.048557936,Bhlhe41,Bhlhe41_threeUTR,6,145863622,145863671,145863670,145863671,50,+,TGGGTGTCCAGCTCTCAAACCGGGAGAGGTATTGCAAGACTTCTTTGGCG,3' UTR,6,145858243,145865558,7316,2,Bhlhe41-201,1887,Bhlhe41-201;Bhlhe41-202;Bhlhe41-203,Bhlhe41;Bhlhe41;Bhlhe41,0;0;1681,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,5,79362,ENSMUSG00000030256,conserved gene but different region,6,145862860,145863901,1042,*,1042,131,0.714971209,0.993290837,0.12571977,1.17E-113,CpGisland,TRUE,U3,Pr-B
8223,cg26875368,-0.00000187,0.00000131,-1.427411872,0.154467728,loss,ns,0.000000859,0.00000222,0.38619815,0.699614846,pos,ns,0.002495901,0.000651256,3.832440325,0.000153626,pos,ns,3.813533909,-0.0000908,0.0000224,-4.055544072,0.0000633,neg,ns,0.964302502,Gm5246,Gm5246_Intergenic_downstream,19,44880818,44880867,44880818,44880819,50,+,CGAACAAAATGTTATGAACTGACATTATGGGTATATAATTTTATGCCATT,Distal Intergenic,19,44851009,44851979,971,1,Gm5246-201,29809,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,20,383450,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5533,cg08571140,-0.0000357,0.0000084,-4.24422843,0.000029,loss,ns,0.00000551,0.0000143,0.386074966,0.699705978,pos,ns,-0.007958166,0.004182803,-1.902591722,0.05802028,neg,ns,1.236420176,0.00000458,0.000143846,0.031810714,0.974643473,pos,ns,0.626592228,Hdac9,Hdac9_Exon,12,34215419,34215468,34215467,34215468,50,+,ACCTCATTTGGGGCTCCACTGCCAGGGAAAAAGTTCCCTTCATCATAGCG,"Exon (Hdac9-205/Hdac9, exon 19 of 25)",12,34047580,34528328,480749,2,Hdac9-205,312860,Hdac9-205;Hdac9-204;Hdac9-206;Hdac9-210;Hdac9-207,Hdac9;Hdac9;Hdac9;Hdac9;Hdac9,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,31,79221,ENSMUSG00000004698,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3511,cg22246611,-0.000108875,0.0000211,-5.172130544,0.000000416,loss,yes,-0.0000138,0.0000358,-0.386028617,0.699740269,neg,ns,-0.025630346,0.010476991,-2.446346097,0.014986643,neg,ns,1.824295638,0.000161728,0.000360303,0.448865868,0.653842031,pos,ns,0.782443996,Galnt1,Galnt1_Exon,18,24246105,24246154,24246105,24246106,50,-,CGTCATTCCTAAAGAGGATCAAGAAAAGATGAAAGAGATGTTTAAAATCA,"Exon (Galnt1-201/Galnt1, exon 4 of 13)",18,24205344,24286818,81475,1,Galnt1-201,40761,Galnt1-201;Galnt1-206;Galnt1-203;Galnt1-208;Galnt1-207;Galnt1-202,Galnt1;Galnt1;Galnt1;Galnt1;Galnt1;Galnt1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,14423,ENSMUSG00000000420,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1836,cg23911027,-0.000000843,0.0000031,-0.272387702,0.785505267,loss,ns,0.00000203,0.00000526,0.386020355,0.699746381,pos,ns,-0.000209194,0.001540931,-0.135758306,0.892100465,neg,ns,0.049586234,-0.00000529,0.000053,-0.099842006,0.920534294,neg,ns,0.93637659,Gli3,Gli3_Intron,13,15486705,15486754,15486705,15486706,50,+,CGACACCTGTGATAACAGCTTCTGGATCCTAATTGAAATTGGTTTCAAAA,"Intron (Gli3-202/Gli3, intron 2 of 11)",13,15463235,15715091,251857,1,Gli3-202,23470,Gli3-202;Gli3-204;Gli3-203;Gli3-201,Gli3;Gli3;Gli3;Gli3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,19,21,14634,ENSMUSG00000021318,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
79,cg08492897,0.0000084,0.0000079,1.062605975,0.288787745,gain,ns,-0.00000518,0.0000134,-0.38592033,0.699820385,neg,ns,-0.002578314,0.003934104,-0.655375147,0.512712293,neg,ns,0.29012627,-0.00000207,0.000135294,-0.015279114,0.987819334,neg,ns,0.051761868,Plag1,Plag1_Promoter,4,3937338,3937387,3937338,3937339,50,-,CGAGAAAAGGGGGAGCATCCCGGATTTTTAGGGATTTTTTGCGATTTTTT,Promoter (<=1kb),4,3900996,3938382,37387,2,Plag1-201,995,Chchd7-202;Chchd7-206;Chchd7-213;Chchd7-207;Chchd7-208;Chchd7-201;Chchd7-205;Chchd7-214;Chchd7-203;Chchd7-209;Chchd7-210;Chchd7-211;Chchd7-204;Plag1-201;Plag1-202;Plag1-204;Plag1-203,Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Plag1;Plag1;Plag1;Plag1,-1501;-1501;-1503;-1527;-1527;-1527;-1527;-1527;-1533;-1656;-2035;-2113;-3467;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,8,22,56711,ENSMUSG00000003282,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
3671,cg20822131,0.0000329,0.0000064,5.141044943,0.000000485,gain,yes,-0.00000419,0.0000109,-0.385756375,0.699941693,neg,ns,-0.000781848,0.003184667,-0.245503878,0.806228757,neg,ns,0.093541715,0.0000809,0.00010952,0.738672618,0.460664695,pos,ns,0.871698789,Erfl,Erfl_Promoter,7,24953593,24953642,24953593,24953594,50,+,CGCCTGCGGGGACAGCCGGTAAACAGAAATCAATCAGGGGCCTCCCAACC,Promoter (9-10kb),7,24927445,24944494,17050,2,Erfl-201,-9099,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,29,36,,NA,mapped to different genes,7,24953557,24953610,54,*,54,7,0.685185185,1.125,0.12962963,0.00000224,CpGisland,TRUE,U13,Hc-P
14494,cg05191651,0.0000112,0.0000033,3.396036565,0.000772773,gain,ns,-0.00000216,0.00000561,-0.385724698,0.699965132,neg,ns,0.000849613,0.001644256,0.516715477,0.605723214,pos,ns,0.217725782,0.0000165,0.0000565,0.291286165,0.771027271,pos,ns,0.060083427,Pde11a,Pde11a_Exon,2,76029295,76029344,76029295,76029296,50,+,CGGTTTGGTCACGGCTCCAAGGTCACAGGCTGTCATTAACATTGATCTGA,"Exon (Pde11a-201/Pde11a, exon 17 of 20)",2,75989912,76338774,348863,2,Pde11a-201,309430,Pde11a-201;Pde11a-203,Pde11a;Pde11a,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,4,241489,ENSMUSG00000075270,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26098,cg15833233,-0.0000102,0.0000136,-0.747670557,0.455225669,loss,ns,-0.00000893,0.0000232,-0.385641042,0.700027031,neg,ns,-0.011710836,0.006785085,-1.725967483,0.085349664,neg,ns,1.068798185,0.000400266,0.000233339,1.715389576,0.087273043,pos,ns,0.662782807,Gm2505,Gm2505_Promoter,3,143865766,143865815,143865766,143865767,50,+,CGCCTGTGTTTGTCCTCGTAGCCTCATTCTTGCTGCTAGCAGAGCATGTC,Promoter (7-8kb),3,143872995,143873819,825,1,Gm2505-201,-7180,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,4,37,100039938,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26212,cg17112923,0.000000241,0.00000401,0.06011396,0.952103606,gain,ns,0.00000262,0.00000681,0.385542312,0.700100088,pos,ns,-0.003980849,0.001994169,-1.996244807,0.046781685,neg,ns,1.329924142,0.000071,0.0000686,1.036015863,0.301002208,pos,ns,0.917869841,Sox5,Sox5_Intron,6,144477570,144477619,144477618,144477619,50,+,TGACTGGCATCCTCTCTTCCAGCAAGTAATTTCCCTCTGCTGATAAATCG,"Intron (Sox5-209/Sox5, intron 3 of 13)",6,143843739,144781977,938239,2,Sox5-209,304358,Sox5-209;Sox5-212,Sox5;Sox5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,71,20678,ENSMUSG00000041540,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15081,cg18166816,0.00000293,0.00000109,2.6759565,0.0078477,gain,ns,0.000000716,0.00000186,0.385513212,0.700121621,pos,ns,0.000528115,0.000544149,0.970532558,0.33253773,pos,ns,0.478159072,-0.0000221,0.0000187,-1.180991541,0.238511363,neg,ns,0.033245267,Zfp827,Zfp827_fiveUTR,8,79028630,79028679,79028630,79028631,50,-,CGGGGGTTTATTTGATCTCACATTAACCAAGGAGGAGAATGTGAGAAAAG,Promoter (<=1kb),8,79028437,79071837,43401,1,Zfp827-201,193,Zfp827-201;Zfp827-202;Zfp827-203;Zfp827-209,Zfp827;Zfp827;Zfp827;Zfp827,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,28,622675,ENSMUSG00000071064,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
3166,cg13160087,-0.00000864,0.00000401,-2.155360143,0.03190321,loss,ns,0.00000262,0.00000681,0.385376084,0.700223095,pos,ns,0.006315612,0.001994562,3.166415494,0.001696837,pos,ns,2.770359755,-0.000333977,0.0000686,-4.868974871,0.00000179,neg,yes,0.861714829,Gm11879,Gm11879_Intergenic_downstream,4,23050858,23050907,23050906,23050907,50,-,AGGGGTATGATGTTTGCAATGCATGCATTTCAGCAGGTCCCATTAGTACG,Distal Intergenic,4,22704057,22704758,702,1,Gm11879-201,346850,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,19,19,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3498,cg12066999,-0.0000142,0.00000857,-1.651965607,0.099554059,loss,ns,-0.0000056,0.0000146,-0.385106634,0.700422505,neg,ns,-0.000856784,0.004263552,-0.200955365,0.840865259,neg,ns,0.07527359,-0.000281667,0.000146623,-1.921028054,0.055645077,neg,ns,0.615626104,Bcl11a,Bcl11a_threeUTR,11,24172759,24172808,24172759,24172760,50,-,CGGATGGAAGCTCGAGAGCCCTTAAGTTCTGAGAAAATTTGAAGCCCCCA,3' UTR,11,24078056,24173194,95139,1,Bcl11a-201,94703,Bcl11a-201;Bcl11a-203;Bcl11a-202;Bcl11a-204,Bcl11a;Bcl11a;Bcl11a;Bcl11a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,98,14025,ENSMUSG00000000861,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17030,cg11160431,-0.00000828,0.00000932,-0.888257183,0.375091105,loss,ns,-0.0000061,0.0000158,-0.385067743,0.700451288,neg,ns,0.002742992,0.004639999,0.591162264,0.554842494,pos,ns,0.255830285,-0.0000417,0.000159569,-0.261624667,0.793784565,neg,ns,0.581613769,Zfp423,Zfp423_Intergenic_upstream,8,88012540,88012589,88012588,88012589,50,+,TCCAACCCTCAGTAACATTTTCAATTTACTCAATTTATAGCTGCAAGACG,Distal Intergenic,8,87661810,87959595,297786,2,Zfp423-202,-52945,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,53,94187,ENSMUSG00000045333,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8697,cg12472009,0.0000134,0.00000307,4.370901315,0.0000169,gain,ns,-0.00000201,0.00000521,-0.384928839,0.700554095,neg,ns,0.002641379,0.001527804,1.728872935,0.084827437,pos,ns,1.071463655,-0.000100122,0.0000525,-1.90558784,0.057628617,neg,ns,0.017251485,Kcnn2,Kcnn2_fiveUTR,18,45559462,45559511,45559462,45559463,50,+,CGACCATAACGCATTGCGCAGGGTGCACCACCGCTTGGTCTCCCTGCAGC,Promoter (<=1kb),18,45559469,45671249,111781,1,Kcnn2-207,0,Gm31907-202;Kcnn2-205;Kcnn2-201;Kcnn2-207;Kcnn2-206;Kcnn2-202;Kcnn2-208;Kcnn2-203,Gm31907;Kcnn2;Kcnn2;Kcnn2;Kcnn2;Kcnn2;Kcnn2;Kcnn2,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,8,140492,ENSMUSG00000054477,conserved gene but different region,18,45559377,45559494,118,*,118,12,0.677966102,0.932192232,0.101694915,1.49E-09,CpGisland,TRUE,U3,Pr-B
21715,cg19464162,0.0000926,0.00000867,10.68233255,6.90E-23,gain,yes,-0.00000567,0.0000147,-0.384900628,0.700574976,neg,ns,0.012207115,0.004316125,2.828258218,0.004984967,pos,ns,2.30233774,-0.000203615,0.000148431,-1.371779577,0.17112402,neg,ns,0.111525682,Slitrk1,Slitrk1_Exon,14,108911341,108911390,108911341,108911342,50,+,CGGTTCCTCAGGATAAACACGAGCATGCCCACCACGGTGAAGGCGGAGGT,"Exon (Slitrk1-201/Slitrk1, exon 1 of 1)",14,108908800,108914158,5359,2,Slitrk1-201,2768,Slitrk1-201,Slitrk1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,17,76965,ENSMUSG00000075478,conserved gene and region,14,108911300,108911424,125,*,125,10,0.6,0.89031339,0.08,0.000000531,CpGisland,TRUE,NA,NRS
15035,cg08772712,0.0000202,0.00000321,6.300630679,1.02E-09,gain,yes,-0.0000021,0.00000545,-0.384671105,0.700744866,neg,ns,0.001780682,0.001596322,1.115490562,0.265504227,pos,ns,0.57592856,0.0000301,0.0000549,0.54740069,0.584497353,pos,ns,0.081359775,Ntrk3,Ntrk3_Exon,7,78577636,78577685,78577636,78577637,50,-,CGTCCGGCCGCCGGCAATTGATCTCAGTCTTGCTGCAGACACAATTTGCA,Promoter (<=1kb),7,78175959,78578408,402450,2,Ntrk3-201,723,Ntrk3-201;Ntrk3-206;Ntrk3-205;Ntrk3-202;Ntrk3-204;Ntrk3-210;Ntrk3-214;Ntrk3-212;Ntrk3-220;Ntrk3-218,Ntrk3;Ntrk3;Ntrk3;Ntrk3;Ntrk3;Ntrk3;Ntrk3;Ntrk3;Ntrk3;Ntrk3,0;0;0;0;0;0;0;0;1013;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,15,18213,ENSMUSG00000059146,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15923,cg10834417,0.0000104,0.0000056,1.855732648,0.0644406,gain,ns,-0.00000366,0.00000951,-0.384616134,0.700785557,neg,ns,-0.000222098,0.002787136,-0.079686889,0.936537704,neg,ns,0.028474734,-0.00021979,0.0000958,-2.293082086,0.022512468,neg,ns,0.837429642,Tlnrd1,Tlnrd1_Exon,7,83882187,83882236,83882235,83882236,50,-,CCTTAAAGCCTGAGATAGCAGGGTGCAGCCTTCAGACACGGCGCAGGCCG,"Exon (Tlnrd1-201/Tlnrd1, exon 1 of 1)",7,83879873,83884305,4433,2,Tlnrd1-201,2069,Mesd-203;Tlnrd1-201,Mesd;Tlnrd1,-2230;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,80889,ENSMUSG00000070462,conserved gene and region,7,83882225,83883078,854,*,854,70,0.653395785,0.769171385,0.081967213,6.74E-47,CpGisland,TRUE,U4,Pr-F
12843,cg07300217,-0.00000594,0.00000594,-0.999563782,0.318301238,loss,ns,0.00000388,0.0000101,0.384602868,0.700795377,pos,ns,0.001734612,0.002955954,0.586819682,0.557751912,pos,ns,0.253558932,-0.0000572,0.000101655,-0.562199203,0.574386582,neg,ns,0.634889123,Ebf2,Ebf2_Intron,14,67291369,67291418,67291369,67291370,50,+,CGTTCTGCCTGGGAAGAATACACAGAAGAGCTGAAAGACGTGTGTTTATA,"Intron (Ebf2-201/Ebf2, intron 7 of 16)",14,67233292,67429777,196486,1,Ebf2-201,58077,Ebf2-201;Ebf2-203;Ebf2-202,Ebf2;Ebf2;Ebf2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,21,13592,ENSMUSG00000022053,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3233,cg19114980,-0.0000224,0.00000538,-4.162070497,0.0000409,loss,ns,-0.00000352,0.00000915,-0.384386333,0.700955672,neg,ns,-0.004475463,0.00268016,-1.669849187,0.095958596,neg,ns,1.017916117,-0.0000387,0.0000922,-0.419865034,0.674874895,neg,ns,0.89533179,Kcnma1,Kcnma1_threeUTR,14,23292276,23292325,23292324,23292325,50,+,AAGAAACACTCCTTGTTTTAGAACACAAATACATAAATTTTTAATCTGCG,3' UTR,14,23289431,23803304,513874,2,Kcnma1-207,510979,Kcnma1-207;Kcnma1-210;Kcnma1-205,Kcnma1;Kcnma1;Kcnma1,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,13,41,16531,ENSMUSG00000063142,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17672,cg09285355,-0.0000018,0.00000144,-1.247665756,0.213095136,loss,ns,0.000000942,0.00000245,0.384214531,0.701082862,pos,ns,0.000743464,0.00071833,1.034988949,0.301480768,pos,ns,0.520740387,-0.00000177,0.0000247,-0.071736815,0.942857617,neg,ns,0.050194969,Ssbp2,Ssbp2_Exon,13,91371216,91371265,91371264,91371265,50,-,TGCAGGCTGCGTGGTAACTGCAAACATCTTGTTCCCTGCTTCTTTGGGCG,"Exon (A830009L08Rik-201/A830009L08Rik-201, exon 3 of 3)",13,91460283,91688866,228584,1,Ssbp2-209,-89067,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,18,66970,ENSMUSG00000003992,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
10852,cg19969279,-0.000144984,0.0000268,-5.418113459,0.000000121,loss,yes,0.0000175,0.0000455,0.384204416,0.701090351,pos,ns,0.125451904,0.013318263,9.41953957,1.08E-18,pos,yes,17.96630248,-0.002969114,0.000458014,-6.48258307,3.55E-10,neg,yes,0.514236697,Tcf7l2,Tcf7l2_Intergenic_upstream,19,55638924,55638973,55638924,55638925,50,-,CGTAAAACTTTTGTTCAAATTTCAAGGATTTTGATAGCCCAAGTGAATAG,Distal Intergenic,19,55741820,55933252,191433,1,Tcf7l2-201,-102896,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,88,21416,ENSMUSG00000024985,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18318,cg17793776,0.0000128,0.0000021,6.095084965,3.24E-09,gain,yes,-0.00000137,0.00000356,-0.384191093,0.701100215,neg,ns,0.00132996,0.001042856,1.275304928,0.203156222,pos,ns,0.692169871,0.0000389,0.0000359,1.085585731,0.278505776,pos,ns,0.057458513,Gm48316,Gm48316_Intergenic_upstream,13,94710162,94710211,94710210,94710211,50,-,GCGCTAATCACCACAATTAGTCCTGAATTATCACCGGACTCTGACAGACG,Distal Intergenic,13,94752270,94752593,324,1,Gm48316-201,-42108,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,36,42,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
27027,cg00966253,0.0000207,0.00000843,2.456362088,0.014583237,gain,ns,0.0000055,0.0000143,0.383965705,0.70126709,pos,ns,0.010176561,0.004194889,2.42594289,0.015839079,pos,ns,1.800270069,-0.000198897,0.000144262,-1.378719733,0.168975232,neg,ns,0.412158215,Negr1,Negr1_Exon,3,156562196,156562245,156562244,156562245,50,+,TGATGCTGTTGGTGCAGGGTGCTTGTTGCTCGAACCAGTGGCTGGCGGCG,Promoter (<=1kb),3,156561794,157316445,754652,1,Negr1-202,402,Negr1-202;Negr1-201;Negr1-203;Negr1-205;Negr1-204,Negr1;Negr1;Negr1;Negr1;Negr1,0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,6,320840,ENSMUSG00000040037,conserved gene and region,3,156562100,156562399,300,*,300,26,0.68,0.756987578,0.086666667,1.93E-18,CpGisland,TRUE,U3,Pr-B
12155,cg03937711,0.0000278,0.00000335,8.276920702,3.81E-15,gain,yes,0.00000219,0.0000057,0.3839513,0.701277756,pos,ns,0.004301383,0.001669091,2.577081419,0.010425909,pos,ns,1.981886059,0.0000483,0.0000574,0.841286583,0.400835881,pos,ns,0.083334,Skor1,Skor1_Promoter,9,63150199,63150248,63150247,63150248,50,+,AATTACCCTAATCAAACAGAAGTTAATAATGGCAGGGATGGCCTGGGGCG,Promoter (1-2kb),9,63138170,63148961,10792,2,Skor1-202,-1238,Skor1-203;Skor1-202;Skor1-201,Skor1;Skor1;Skor1,0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,6,15,207667,ENSMUSG00000022245,conserved gene but different region,9,63150242,63150312,71,*,71,10,0.816901409,0.881987578,0.14084507,1.81E-09,CpGisland,TRUE,U13,Hc-P
25189,cg01992129,0.000000154,0.00000376,0.041055593,0.967278005,gain,ns,-0.00000245,0.00000639,-0.383901845,0.701314374,neg,ns,-0.002850346,0.001871508,-1.523020486,0.128773003,neg,ns,0.890175177,0.0000247,0.0000644,0.383252633,0.701795138,pos,ns,0.881273214,Pcdh19,Pcdh19_threeUTR,X,133583238,133583287,133583286,133583287,50,+,ACAGTAATAGTGTCATCAGGCTCATTCCCCTCACTAGAGGAGCGAAGGCG,3' UTR,20,133582860,133688987,106128,2,Pcdh19-202,105700,Pcdh19-202;Pcdh19-203;Pcdh19-201;Pcdh19-204,Pcdh19;Pcdh19;Pcdh19;Pcdh19,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,8,279653,ENSMUSG00000051323,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22557,cg23000810,-0.0000287,0.00000993,-2.892148747,0.004096822,loss,ns,0.00000648,0.0000169,0.383853463,0.701350198,pos,ns,-0.003674179,0.004943879,-0.743177454,0.457937083,neg,ns,0.339194187,-0.000505323,0.00017002,-2.972146567,0.003188861,neg,ns,0.637826437,Rpl19-ps10,Rpl19-ps10_Intergenic_upstream,7,115132025,115132074,115132025,115132026,50,+,CGGGGCCAGCTCCAGTTATACAATTGAATTGCTGCAGCTGCCTGGGAAAC,Distal Intergenic,7,115172056,115172385,330,1,Rpl19-ps10-201,-39982,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,29,668472,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25592,cg06729638,0.00000279,0.00000727,0.383533927,0.701586815,gain,ns,-0.00000474,0.0000123,-0.383826876,0.701369885,neg,ns,0.002831371,0.003616444,0.782915703,0.434274289,pos,ns,0.362235882,-0.000265933,0.000124369,-2.138253307,0.033277747,neg,ns,0.184982899,Ache,Ache_Exon,5,137294151,137294200,137294199,137294200,50,+,CGAGTTCCACCGCTGGAGCTCCTACATGGTGCACTGGAAGAACCAGTTCG,"Exon (Ache-201/Ache, exon 5 of 5)",5,137288277,137294466,6190,1,Ache-201,5874,Ache-204;Ache-206;Ache-207;Ache-201;Ache-209;Ache-202;Ache-208;Ache-203;Ache-205;Srrt-201;Srrt-212;Srrt-209;Srrt-211;Srrt-202;Srrt-216;Srrt-205;Srrt-206;Srrt-208;Srrt-217;Srrt-207;Srrt-213;Srrt-215;Srrt-204;Ufsp1-201;Ufsp1-202,Ache;Ache;Ache;Ache;Ache;Ache;Ache;Ache;Ache;Srrt;Srrt;Srrt;Srrt;Srrt;Srrt;Srrt;Srrt;Srrt;Srrt;Srrt;Srrt;Srrt;Srrt;Ufsp1;Ufsp1,6632;6385;6385;0;0;0;5866;5063;4904;0;0;0;0;5445;3225;2734;3017;2653;3367;4347;5809;6118;5686;-429;-842,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,11423,ENSMUSG00000023328,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27428,cg26572218,0.000032,0.00000461,6.926830356,2.49E-11,gain,yes,-0.00000301,0.00000784,-0.383770888,0.701411342,neg,ns,0.004700245,0.002296735,2.046490023,0.041551359,pos,ns,1.381414767,-0.0000227,0.000079,-0.287750587,0.773729936,neg,ns,0.047683465,Lmx1a,Lmx1a_Intron,1,167802899,167802948,167802899,167802900,50,-,CGGTAGGGCCATATGTTCCCCATAATCTCCAAAGCCGTCACTTCAATTAG,"Intron (Lmx1a-202/Lmx1a, intron 4 of 8)",1,167689237,167848741,159505,1,Lmx1a-202,113662,Lmx1a-202;Lmx1a-201,Lmx1a;Lmx1a,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,6,110648,ENSMUSG00000026686,conserved gene and region,1,167802691,167803010,320,*,320,17,0.559375,0.679151061,0.053125,7.75E-09,CpGisland,TRUE,NA,NRS
17402,cg06871379,-0.00000644,0.00000179,-3.603165361,0.000366072,loss,ns,-0.00000117,0.00000304,-0.383727452,0.701443506,neg,ns,0.00000805,0.000889981,0.009044978,0.992789068,pos,ns,0.003143014,0.0000012,0.0000306,0.03909758,0.968837757,pos,ns,0.970842256,Tpm3,Tpm3_Exon,3,90098398,90098447,90098398,90098399,50,-,CGAAACCGCCTGCTTTCTAATGAGCTGAAGCTAACGCTGCATGATCTGTG,"Exon (Tpm3-203/Tpm3, exon 8 of 8)",3,90072651,90100902,28252,1,Tpm3-204,25747,Tpm3-204;Tpm3-201;Tpm3-202;Tpm3-203;Tpm3-210,Tpm3;Tpm3;Tpm3;Tpm3;Tpm3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,6,59069,ENSMUSG00000027940,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27411,cg04583031,0.0000782,0.0000108,7.237696594,3.61E-12,gain,yes,-0.00000704,0.0000184,-0.383678831,0.70147951,neg,ns,0.00862293,0.005376306,1.603876319,0.109759615,pos,ns,0.959557424,-0.00029837,0.000184891,-1.61376254,0.107596356,neg,ns,0.024926398,Fam78b,Fam78b_Exon,1,167001662,167001711,167001662,167001663,50,+,CGCATCGAGGAGACCTCGCCCATCGTCCTGCGCTACAAGACCCCCTACTT,Promoter (<=1kb),1,167001417,167091302,89886,1,Fam78b-205,245,Fam78b-205;Fam78b-206;Fam78b-204;Fam78b-202;Fam78b-201;Fam78b-203,Fam78b;Fam78b;Fam78b;Fam78b;Fam78b;Fam78b,0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,9,226610,ENSMUSG00000060568,conserved gene and region,1,167000772,167001755,984,*,984,138,0.762195122,0.968669748,0.140243902,1.97E-127,CpGisland,TRUE,U3,Pr-B
6551,cg07155325,-0.0000326,0.0000185,-1.75789533,0.079752216,loss,ns,0.0000121,0.0000315,0.383420867,0.701670543,pos,ns,0.04793736,0.009227684,5.19495041,0.000000372,pos,ns,6.429681701,-0.001896272,0.000317339,-5.97553595,6.29E-09,neg,yes,0.714562529,Zfp536,Zfp536_Intron,7,37681046,37681095,37681094,37681095,50,-,GAACTAACTCAAAGCAAGGGCTGGCTAATCACAATTTTGCAAATTGTACG,"Intron (Zfp536-202/Zfp536, intron 3 of 6)",7,37479104,37769624,290521,2,Zfp536-202,88529,Zfp536-202;Zfp536-201;Zfp536-203;Zfp536-206;Zfp536-209;Zfp536-208,Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,73,112,243937,ENSMUSG00000043456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8178,cg01489832,0.00000521,0.00000787,0.66165471,0.508684037,gain,ns,-0.00000512,0.0000134,-0.383393463,0.701690838,neg,ns,-0.006823561,0.003915985,-1.742489115,0.082414563,neg,ns,1.083996041,0.0000257,0.00013467,0.190534548,0.849014988,pos,ns,0.813159461,Pax2,Pax2_Exon,19,44833178,44833227,44833178,44833179,50,-,CGAGCACCACTCTGCCTGGTTACCCCCCTCACGTGCCCCCCACTGGCCAG,"Exon (Pax2-203/Pax2, exon 8 of 10)",19,44756045,44837851,81807,1,Pax2-203,77133,Pax2-203;Pax2-201,Pax2;Pax2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,16,166,18504,ENSMUSG00000004231,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26757,cg17318138,0.000011,0.00000415,2.642022989,0.008659426,gain,ns,-0.00000271,0.00000706,-0.383373499,0.701705623,neg,ns,-0.0000139,0.00206731,-0.006723807,0.994639543,neg,ns,0.002334279,0.000185002,0.0000711,2.602193822,0.009707811,pos,ns,0.095833815,Scrt2,Scrt2_Promoter,2,152080887,152080936,152080935,152080936,50,-,CGGCAGCAGGAAAATTAATTACTGGACGATTTTCACTTCCTCTTGCAGCG,Promoter (<=1kb),2,152081529,152095802,14274,1,Scrt2-201,-642,Scrt2-201,Scrt2,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,10,545474,ENSMUSG00000060257,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
18624,cg16761811,0.000108623,0.0000118,9.185565805,6.04E-18,gain,yes,-0.0000077,0.0000201,-0.383326763,0.701740236,neg,ns,0.012526681,0.00588562,2.128353709,0.03409621,pos,ns,1.467293897,-0.0000718,0.000202406,-0.354529835,0.723182897,neg,ns,0.131441589,Hoxb3,Hoxb3_fiveUTR,11,96341141,96341190,96341141,96341142,50,-,CGGTGGCTAAGGTAAGCTGGACTGAAATAGGCTATCAGTTTGTGAATGGC,5' UTR,11,96323326,96347930,24605,1,Hoxb3-202,17815,Hoxb3-202;Hoxb3-203;Hoxb3-204;Hoxb3-201,Hoxb3;Hoxb3;Hoxb3;Hoxb3,0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,19,15410,ENSMUSG00000048763,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
18860,cg02783532,-0.0000064,0.00000222,-2.883148717,0.004212518,loss,ns,-0.00000145,0.00000377,-0.383323773,0.70174245,neg,ns,-0.001012869,0.001104996,-0.916626374,0.360050983,neg,ns,0.443635999,-0.0000747,0.000038,-1.966149815,0.050173375,neg,ns,0.0288106,E130114P18Rik,E130114P18Rik_Intron,4,97773279,97773328,97773279,97773280,50,-,CGTCTGGCCTCAGCAGTCAACCTAACCCGAAAAGAAATGTCTGGACCCGG,"Intron (Nfia-208/Nfia, intron 1 of 3)",4,97568133,97778048,209916,2,E130114P18Rik-204,4720,E130114P18Rik-204;E130114P18Rik-205;Nfia-208;Nfia-202;Nfia-203;Nfia-205;Nfia-201;Nfia-204,E130114P18Rik;E130114P18Rik;Nfia;Nfia;Nfia;Nfia;Nfia;Nfia,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,24,319865,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
15090,cg23184448,-0.0000261,0.00000822,-3.17968032,0.001623413,loss,ns,0.00000535,0.000014,0.38331086,0.701752014,pos,ns,-0.001423722,0.004089711,-0.348122785,0.72798425,neg,ns,0.137878017,-0.0000847,0.000140645,-0.602032794,0.54759237,neg,ns,0.827607278,Gm8345,Gm8345_Intergenic_upstream,13,79050839,79050888,79050887,79050888,50,+,TTGTTGGTATTTATCAACTTACTAATTATAGGCAAATTGCTTCCAACACG,Distal Intergenic,13,78953088,78954792,1705,2,Gm8345-201,-96047,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,13,666883,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8750,cg05258148,-0.00000731,0.00000731,-0.999902383,0.318137596,loss,ns,0.00000476,0.0000124,0.383157847,0.70186534,pos,ns,-0.000412945,0.003639565,-0.113460119,0.909739221,neg,ns,0.041083081,-0.000119222,0.000125164,-0.952526836,0.341571955,neg,ns,0.867675443,Dscaml1,Dscaml1_Intron,9,45699453,45699502,45699501,45699502,50,-,CTCGGATGTCTCTGACTGCAGGCTTTTTCTTCATTATAACTTGCACCTCG,"Intron (Dscaml1-211/Dscaml1, intron 11 of 32)",9,45430291,45753262,322972,1,Dscaml1-211,269162,Dscaml1-211;Dscaml1-201;Dscaml1-210;Dscaml1-207,Dscaml1;Dscaml1;Dscaml1;Dscaml1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,32,114873,ENSMUSG00000032087,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18519,cg12370791,0.0000582,0.00000764,7.618624426,3.14E-13,gain,yes,-0.00000497,0.000013,-0.383097706,0.701909884,neg,ns,0.008676756,0.003803616,2.281185734,0.023215483,pos,ns,1.634222271,0.000155029,0.000130806,1.185178675,0.236854549,pos,ns,0.196980832,Hoxb9,Hoxb9_fiveUTR,11,96271522,96271571,96271522,96271523,50,-,CGCCCGGATAATGTCTGAGAATGTCCATTTCTGGGACGCTTAGCAGCTAT,Promoter (<=1kb),11,96271523,96276595,5073,1,Hoxb9-202,0,Hoxb9-201;Hoxb9-202,Hoxb9;Hoxb9,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,22,15417,ENSMUSG00000020875,mapped to different genes,11,96271433,96272051,619,*,619,70,0.675282714,0.992327951,0.113085622,2.33E-57,CpGisland,TRUE,NA,NRS
23099,cg11641322,-0.00000229,0.00000459,-0.499024584,0.618115997,loss,ns,-0.00000298,0.00000779,-0.383091045,0.701914818,neg,ns,-0.004895125,0.00228222,-2.144895806,0.032738088,neg,ns,1.484946683,0.000139264,0.0000785,1.774395174,0.076979212,pos,ns,0.895215034,Rnf220,Rnf220_Intron,4,117297815,117297864,117297863,117297864,50,-,CCCTTTAATATGATAGCCGCCACCGGCTAATTTTTTTCTTAATGGCAACG,"Intron (Rnf220-201/Rnf220, intron 4 of 14)",4,117271463,117497052,225590,2,Rnf220-201,199188,Rnf220-201;Rnf220-202;Rnf220-208,Rnf220;Rnf220;Rnf220,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3326,cg13053857,0.0000043,0.00000279,1.537685288,0.125145616,gain,ns,-0.00000182,0.00000475,-0.383066025,0.701933349,neg,ns,0.00081328,0.001390748,0.584778923,0.55912174,pos,ns,0.252493621,-0.0000403,0.0000478,-0.84161852,0.400650282,neg,ns,0.927217561,Gm11890,Gm11890_Intergenic_downstream,4,23602676,23602725,23602724,23602725,50,+,AGCTGCCTGATATTCTAAAGCAGTGAAACATCTGCACGGCGGATGATACG,Distal Intergenic,4,23659928,23660344,417,2,Gm11890-201,57619,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,32,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9797,cg19397128,0.0000219,0.00000593,3.683128514,0.000271754,gain,ns,-0.00000386,0.0000101,-0.383056339,0.701940524,neg,ns,0.001319282,0.002953437,0.446693898,0.655407981,pos,ns,0.183488274,0.0000134,0.000101568,0.132026596,0.895048904,pos,ns,0.025741953,Trps1,Trps1_Promoter,15,50890046,50890095,50890094,50890095,50,+,ATTACGTCAGTTTCAAGACACCAACACTATTAATATCAAAGGAGCCTTCG,Promoter (<=1kb),15,50846176,50890463,44288,2,Trps1-208,368,Trps1-202;Trps1-206;Trps1-204;Trps1-205;Trps1-201;Trps1-208,Trps1;Trps1;Trps1;Trps1;Trps1;Trps1,0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,9,36,83925,ENSMUSG00000038679,conserved gene and region,15,50890094,50890382,289,*,289,43,0.806228374,0.917663565,0.148788927,2.36E-41,CpGisland,TRUE,U2,Pr-W
6795,cg23283355,0.00000191,0.00000437,0.437220541,0.662255834,gain,ns,0.00000285,0.00000743,0.383026852,0.701962365,pos,ns,0.011941314,0.00217606,5.487584473,8.48E-08,pos,ns,7.071624946,-0.00026327,0.0000748,-3.518031023,0.000499811,neg,ns,0.912836718,Luc7l2,Luc7l2_fiveUTR,6,38554950,38554999,38554998,38554999,50,+,AAACTCTGCCTTCTTTGCAATTTTGCCTAGGGCCCTGGTGGTGGCAACCG,5' UTR,6,38551334,38605040,53707,1,Luc7l2-213,3616,Luc7l2-213;Luc7l2-208;Luc7l2-201;Luc7l2-209;Luc7l2-212;Luc7l2-211;Luc7l2-206;Luc7l2-207;Luc7l2-205;Luc7l2-202;Luc7l2-204;Luc7l2-210,Luc7l2;Luc7l2;Luc7l2;Luc7l2;Luc7l2;Luc7l2;Luc7l2;Luc7l2;Luc7l2;Luc7l2;Luc7l2;Luc7l2,0;0;0;0;3419;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,6,10,192196,ENSMUSG00000029823,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
27286,cg26939043,-0.00000665,0.00000732,-0.908504526,0.364317461,loss,ns,0.00000477,0.0000124,0.38302302,0.701965203,pos,ns,0.000708388,0.003644716,0.194360318,0.846021064,pos,ns,0.072618824,-0.000279264,0.000125341,-2.228021384,0.02659632,neg,ns,0.709680075,Prrx1,Prrx1_threeUTR,1,163253969,163254018,163254017,163254018,50,+,CAAGTTACCTTTTCAGTGTCTTCCGTTAGAATCCGTTATGAAGCCCCTCG,3' UTR,1,163245119,163313672,68554,2,Prrx1-202,59654,Prrx1-202;Prrx1-201;Prrx1-205;Prrx1-204,Prrx1;Prrx1;Prrx1;Prrx1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,11,18933,ENSMUSG00000026586,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7281,cg13983234,-0.0000334,0.0000101,-3.303515404,0.001066573,loss,ns,-0.00000658,0.0000172,-0.383014783,0.701971304,neg,ns,-0.007257665,0.005035585,-1.441275596,0.150516184,neg,ns,0.822416801,-0.000128119,0.000173173,-0.739828932,0.459963694,neg,ns,0.81747629,Gm5267,Gm5267_Intergenic_upstream,1,41981917,41981966,41981917,41981918,50,+,CGGATATTTAAAATGTGTGTGTCTTTGTTTGCACATAAATTAACATGAGA,Distal Intergenic,1,42103289,42104333,1045,1,Gm5267-201,-121323,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,15,383634,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12416,cg08478189,-0.00000498,0.00000238,-2.090319464,0.037403507,loss,ns,0.00000155,0.00000405,0.382849573,0.702093678,pos,ns,0.000702096,0.001185846,0.592063103,0.554239889,pos,ns,0.256302221,-0.0000539,0.0000408,-1.321431038,0.187332111,neg,ns,0.03451057,Klf7,Klf7_fiveUTR,1,64121367,64121416,64121415,64121416,50,-,AAGGGGGATGCAAACTCACTGACACGAAGCTGCCATCTATTTCTGCAGCG,Promoter (<=1kb),1,64029447,64121491,92045,2,Klf7-202,75,Klf7-202;Klf7-201;Klf7-203,Klf7;Klf7;Klf7,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,6,21,93691,ENSMUSG00000025959,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
18809,cg05633263,-0.0000401,0.00000782,-5.131671319,0.000000508,loss,yes,0.00000508,0.0000133,0.382827373,0.702110123,pos,ns,-0.003781892,0.003891126,-0.971927318,0.331844451,neg,ns,0.47906544,-0.0000635,0.000133816,-0.474815492,0.635252816,neg,ns,0.87288966,Srcin1,Srcin1_Intron,11,97558318,97558367,97558366,97558367,50,-,TTCTGTAAACATTCCTGTGTAATATCCCCCCAAATTGCTAATACCCAGCG,"Intron (Srcin1-203/Srcin1, intron 1 of 19)",11,97509340,97575215,65876,2,Srcin1-203,16848,Srcin1-203;Srcin1-209;Srcin1-202;Srcin1-201;Srcin1-211;Srcin1-210;Srcin1-204;Srcin1-207;Srcin1-205,Srcin1;Srcin1;Srcin1;Srcin1;Srcin1;Srcin1;Srcin1;Srcin1;Srcin1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,2,56013,ENSMUSG00000038453,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9635,cg25742767,0.000148343,0.0000124,12.00499946,1.59E-27,gain,yes,-0.00000804,0.000021,-0.382811758,0.702121689,neg,ns,0.000190463,0.006150104,0.030969035,0.975314163,pos,ns,0.010855469,0.000583298,0.000211502,2.757888257,0.006162867,pos,ns,0.239553627,Dbx1,Dbx1_Intron,7,49635426,49635475,49635474,49635475,50,-,TGTCAAGCAGTCACTGCTTGTGCTCAATAGGGCATCAAATTGGCGCGACG,"Intron (Dbx1-201/Dbx1, intron 2 of 3)",7,49631499,49636849,5351,2,Dbx1-201,1374,Dbx1-201,Dbx1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,18,13172,ENSMUSG00000030507,conserved gene and region,7,49635469,49635614,146,*,146,18,0.630136986,1.271407837,0.123287671,8.72E-16,CpGisland,TRUE,U13,Hc-P
25089,cg22089912,0.00000371,0.0000046,0.805513947,0.42114058,gain,ns,0.00000299,0.00000782,0.382598811,0.702279437,pos,ns,0.003627346,0.002291903,1.582678701,0.114514365,pos,ns,0.94114003,-0.000165213,0.0000788,-2.096124643,0.036881624,neg,ns,0.913752191,Trmt6,Trmt6_Exon,2,132811023,132811072,132811071,132811072,50,+,ATGTCATCTTGAGTAAGTTTCTGAGATTTCCCATCATCAACTATATTTCG,"Exon (Trmt6-201/Trmt6, exon 3 of 11)",2,132804207,132816054,11848,2,Trmt6-201,4982,Trmt6-206;Trmt6-201;Trmt6-205;Trmt6-204;Trmt6-203;Trmt6-202,Trmt6;Trmt6;Trmt6;Trmt6;Trmt6;Trmt6,0;0;0;0;0;4941,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,66926,ENSMUSG00000037376,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23644,cg19919570,-0.00000323,0.00000212,-1.524698479,0.128353832,loss,ns,0.00000138,0.0000036,0.382523473,0.702335248,pos,ns,0.000260196,0.001053464,0.246990947,0.805078718,pos,ns,0.094161653,0.00000743,0.0000362,0.20508605,0.837639491,pos,ns,0.953543446,Acvr2b,Acvr2b_Exon,9,119427992,119428041,119428040,119428041,50,+,AACCCCCAGGTGTACTTCTGCTGCTGTGAAGGCAACTTCTGCAACGAACG,"Exon (Acvr2b-202/Acvr2b, exon 3 of 10)",9,119402118,119433515,31398,1,Acvr2b-202,25874,Acvr2b-202;Acvr2b-201;Acvr2b-205;Acvr2b-206;Acvr2b-203;Acvr2b-204,Acvr2b;Acvr2b;Acvr2b;Acvr2b;Acvr2b;Acvr2b,0;0;0;-2305;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,6,11481,ENSMUSG00000061393,conserved gene and region,9,119427852,119428057,206,*,206,11,0.640776699,0.524537037,0.053398058,0.00000611,CpGisland,TRUE,U11,Tr-P
20353,cg26925489,0.0000787,0.00000668,11.78385607,9.81E-27,gain,yes,0.00000434,0.0000114,0.382511155,0.702344375,pos,ns,0.007841288,0.003326082,2.357514814,0.019018904,pos,ns,1.720814525,-0.000145263,0.000114384,-1.269966301,0.205049053,neg,ns,0.083401967,Hoxc5,Hoxc5_Intron,15,103010060,103010109,103010060,103010061,50,+,CGGCTTCCCTAGAAGAACGGGCGGAGAGAGTTTTTTATGGCCCCATAAAA,"Intron (Hoxc5-202/Hoxc5, intron 1 of 1)",15,102967443,103015676,48234,1,Hoxc5-202,42617,Hoxc5-202;Hoxc5-201;Hoxc6-202;Hoxc6-203;Hoxc6-201,Hoxc5;Hoxc5;Hoxc6;Hoxc6;Hoxc6,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,46,134,15424,ENSMUSG00000022485,mapped to different genes,15,103009987,103010218,232,*,232,17,0.556034483,0.969041769,0.073275862,5.22E-11,CpGisland,TRUE,U13,Hc-P
23020,cg04766337,0.0000185,0.00000966,1.917594009,0.056081221,gain,ns,0.00000627,0.0000164,0.382354473,0.702460453,pos,ns,0.001664266,0.004806744,0.346235694,0.729400467,pos,ns,0.137033963,-0.000327196,0.000165304,-1.979366923,0.048659121,neg,ns,0.812805088,Parp8,Parp8_threeUTR,13,116877533,116877582,116877581,116877582,50,-,CACAGAAGGATATGGCTCGAAAATCACAACTTTTCTAGGAGATTCCAACG,3' UTR,13,116854820,117025522,170703,2,Parp8-201,147940,Parp8-201;Parp8-203;Parp8-207,Parp8;Parp8;Parp8,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,52552,ENSMUSG00000021725,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7051,cg22776742,0.0000617,0.00000868,7.099892661,8.57E-12,gain,yes,0.00000564,0.0000148,0.382257391,0.702532381,pos,ns,0.017644366,0.004321962,4.082489384,0.0000568,pos,ns,4.24602167,-0.000377344,0.000148632,-2.538781146,0.011612738,neg,ns,0.289837167,Tfap2a,Tfap2a_Intron,13,40719858,40719907,40719906,40719907,50,-,TTACTGCAGGGCTTCCTGCCATTAGCTCCAGCTCCGGAAGAACGCATGCG,"Intron (Tfap2a-201/Tfap2a, intron 5 of 6)",13,40715302,40730443,15142,2,Tfap2a-201,10536,Tfap2a-201;Tfap2a-202;Tfap2a-205;Tfap2a-203;Tfap2a-209;Tfap2a-208;Tfap2a-206;Tfap2a-204,Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,57,21418,ENSMUSG00000021359,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
20988,cg14690397,-9.96E-08,0.000000474,-0.21011403,0.833716703,loss,ns,0.000000308,0.000000806,0.382083074,0.702661539,pos,ns,-0.000356464,0.00023601,-1.510375507,0.131966238,neg,ns,0.879537163,0.00000357,0.00000812,0.439836064,0.660362325,pos,ns,0.98950847,Tanc2,Tanc2_Exon,11,105914034,105914083,105914082,105914083,50,+,TTTGAAGGTTGTCAGACGTTACCGAGTCGCCCACGAGGTATATTTCACCG,"Exon (Tanc2-204/Tanc2, exon 8 of 12)",11,105589991,105929304,339314,1,Tanc2-202,324043,Tanc2-202;Tanc2-204;Tanc2-201;Tanc2-205,Tanc2;Tanc2;Tanc2;Tanc2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,15,20,77097,ENSMUSG00000053580,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20239,cg25057269,-0.0000154,0.00000983,-1.566008322,0.118366857,loss,ns,-0.00000638,0.0000167,-0.381969642,0.702745589,neg,ns,-0.011875266,0.00489189,-2.427541369,0.015770781,neg,ns,1.802146795,0.000362058,0.000168232,2.152137767,0.032158325,pos,ns,0.199065893,Hoxc10,Hoxc10_Promoter,15,102966640,102966689,102966640,102966641,50,-,CGGCCGTCTGAATCATCAAGGCCATTTTCAAATCCCATTGGTCTAGCCGT,Promoter (<=1kb),15,102966796,102971893,5098,1,Hoxc10-201,-156,Hoxc10-201;Hoxc5-202,Hoxc10;Hoxc5,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,8,21,209448,ENSMUSG00000022484,mapped to different genes,15,102966502,102966645,144,*,144,15,0.694444444,0.876623377,0.104166667,4.95E-12,CpGisland,TRUE,NA,NRS
4977,cg18534605,-1.29E-08,0.00000553,-0.002330363,0.99814214,loss,ns,0.00000359,0.00000939,0.381779769,0.702886288,pos,ns,-0.004169414,0.002751943,-1.515079905,0.13077111,neg,ns,0.88348819,0.000194395,0.0000946,2.054066861,0.040807517,pos,ns,0.465552975,Prdm12,Prdm12_Intron,2,31641089,31641138,31641089,31641090,50,+,CGCATTGAGCTACAATTTACTGCTACAGCATTCTTCCAGGGCTAATGAAT,"Intron (Prdm12-201/Prdm12, intron 1 of 4)",2,31640037,31655795,15759,1,Prdm12-201,1052,Prdm12-201,Prdm12,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,10,381359,ENSMUSG00000079466,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
19513,cg01823375,0.00000403,0.00000396,1.017425095,0.309744632,gain,ns,0.00000257,0.00000673,0.381734379,0.702919925,pos,ns,0.01063266,0.001970663,5.395474425,0.000000136,pos,ns,6.866644295,-0.00022839,0.0000678,-3.370035142,0.000846628,neg,ns,0.92907452,Armc8,Armc8_Exon,9,99505308,99505357,99505308,99505309,50,+,CGAAGCTGCTGCACAGATCTGGATAAACTGTGCAAACATCTACAAAGAAT,"Exon (Armc8-201/Armc8, exon 14 of 22)",9,99478372,99568899,90528,2,Armc8-201,63542,Armc8-201,Armc8,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,10,74125,ENSMUSG00000032468,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27263,cg23590302,-0.0000014,0.00000115,-1.214165337,0.225608729,loss,ns,0.000000748,0.00000196,0.381719397,0.702931027,pos,ns,0.001648556,0.000573814,2.872980391,0.004346811,pos,ns,2.361829291,-0.0000725,0.0000197,-3.67575261,0.000279387,neg,ns,0.972012366,Eef1aknmt,Eef1aknmt_Exon,1,162546221,162546270,162546221,162546222,50,+,CGCCCACCTGCAGGACACGGCCAACCTCAGCCAGCATCCTGTCCACCTGT,"Exon (Eef1aknmt-201/Eef1aknmt, exon 2 of 8)",1,162532127,162548551,16425,2,Eef1aknmt-201,2281,Eef1aknmt-201;Eef1aknmt-204;Eef1aknmt-206;Eef1aknmt-207;Eef1aknmt-203;Eef1aknmt-202;Eef1aknmt-205;Eef1aknmt-208,Eef1aknmt;Eef1aknmt;Eef1aknmt;Eef1aknmt;Eef1aknmt;Eef1aknmt;Eef1aknmt;Eef1aknmt,0;0;-1859;0;0;0;0;2259,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,71449,ENSMUSG00000026694,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25901,cg07201657,0.000000183,0.00000202,0.090324692,0.928087531,gain,ns,-0.00000131,0.00000344,-0.381583058,0.703032065,neg,ns,0.000406876,0.001006631,0.404195707,0.68634752,pos,ns,0.163455931,-0.0000248,0.0000346,-0.717079375,0.473865056,neg,ns,0.962054835,Plekha5,Plekha5_Exon,6,140563575,140563624,140563623,140563624,50,+,AAAATGAACCTATTATCACCATGGTTCACACAATGATTGAGAACTCGGCG,"Exon (Plekha5-201/Plekha5, exon 16 of 31)",6,140424054,140597110,173057,1,Plekha5-201,139521,Plekha5-201;Plekha5-209;Plekha5-205;Plekha5-207;Plekha5-215;Plekha5-208;Plekha5-202;Plekha5-214;Plekha5-216,Plekha5;Plekha5;Plekha5;Plekha5;Plekha5;Plekha5;Plekha5;Plekha5;Plekha5,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,3,109135,ENSMUSG00000030231,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18046,cg03915476,0.0000418,0.0000119,3.517201595,0.000501315,gain,ns,-0.00000771,0.0000202,-0.381550448,0.703056233,neg,ns,0.008421323,0.005921672,1.422119035,0.155997051,pos,ns,0.806883613,-0.0000656,0.000203646,-0.321949865,0.747707666,neg,ns,0.692212172,Pola1,Pola1_Intron,X,93409268,93409317,93409316,93409317,50,+,AATCTTTACAAGGCAAACACAGTTGGAAACAAAGACATTTAGCTGAAGCG,"Intron (Pola1-201/Pola1, intron 35 of 36)",20,93304767,93632155,327389,2,Pola1-201,222838,Pola1-201,Pola1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,59,62,18968,ENSMUSG00000006678,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24163,cg09391382,-0.0000159,0.00000326,-4.879565013,0.0000017,loss,yes,-0.00000211,0.00000554,-0.381518695,0.703079766,neg,ns,0.000807706,0.0016222,0.497907823,0.618902035,pos,ns,0.20837809,-0.0000663,0.0000558,-1.1887393,0.235452084,neg,ns,0.932348396,Usp15,Usp15_threeUTR,10,123113349,123113398,123113397,123113398,50,+,TTCACTTCAAGTACTGCACAAGTTAAAATCTGATAAAGGATTTACATTCG,3' UTR,10,123105006,123196995,91990,2,Usp15-211,83597,Usp15-211;Usp15-201;Usp15-208;Usp15-203,Usp15;Usp15;Usp15;Usp15,0;0;0;6083,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,3,14479,ENSMUSG00000020124,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6177,cg17337528,0.00000209,0.00000646,0.322963379,0.746940708,gain,ns,-0.00000419,0.000011,-0.381430042,0.703145469,neg,ns,0.006330142,0.003216066,1.968287179,0.049925844,pos,ns,1.301674581,-0.00026863,0.0001106,-2.428833271,0.015715772,neg,ns,0.908007652,Gm9211,Gm9211_Intergenic_downstream,7,36250072,36250121,36250072,36250073,50,-,CGCTAACACTGTTTAGATTTCTTAATATACTTGTATTAGCATGAATAAGT,Distal Intergenic,7,36234292,36235266,975,1,Gm9211-201,15829,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,12,15,668507,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15997,cg23352950,-0.00000665,0.00000341,-1.948080655,0.052307574,loss,ns,-0.00000221,0.0000058,-0.381379354,0.703183037,neg,ns,-0.003555088,0.001698371,-2.093233858,0.03714072,neg,ns,1.430149678,0.0000509,0.0000584,0.87188164,0.383947705,pos,ns,0.94040837,Gm12416,Gm12416_Intergenic_downstream,4,84108307,84108356,84108355,84108356,50,+,GGGCCCAGCGGATTTGTAGCACACCTGCATTGGAGGTAAATCGATTGGCG,Distal Intergenic,4,84104895,84105902,1008,1,Gm12416-201,3412,Gm12416-201,Gm12416,3412,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,11,668010,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24016,cg06853774,-0.00000189,0.000000873,-2.165380701,0.031120993,loss,ns,-0.000000566,0.00000148,-0.381252666,0.703276935,neg,ns,-0.000535083,0.000434611,-1.231177289,0.21918979,neg,ns,0.65917968,-0.0000127,0.0000149,-0.852253193,0.394731509,neg,ns,0.01088062,Banp,Banp_fiveUTR,8,121950584,121950633,121950584,121950585,50,+,CGCGAGGACGGACGCCATTATCGCATCTCCCCGACAAACACCACGAGAAT,Promoter (<=1kb),8,121950585,121991569,40985,1,Banp-216,0,Banp-207;Banp-202;Banp-204;Banp-208;Banp-201;Banp-216;Banp-215;Banp-205;Galnt2l-201,Banp;Banp;Banp;Banp;Banp;Banp;Banp;Banp;Galnt2l,0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,4,53325,ENSMUSG00000025316,conserved gene and region,8,121950349,121951234,886,*,886,132,0.75959368,1.035981929,0.148984199,3.99E-126,CpGisland,TRUE,U1,Pr-A
21183,cg21562108,0.0000291,0.00000367,7.929670772,4.02E-14,gain,yes,-0.00000238,0.00000624,-0.381244453,0.703283022,neg,ns,0.002217238,0.001828102,1.212863327,0.226105502,pos,ns,0.64568887,-0.000145315,0.0000629,-2.311413818,0.021465555,neg,ns,0.052442765,Mpped2,Mpped2_Exon,2,106650326,106650375,106650374,106650375,50,-,GACCACCCCCTGCCTCCGATCAAATCAGACAGTAATAACACGCTGAAGCG,"Exon (BB218582-201/BB218582-201, exon 1 of 7)",2,106693269,106868356,175088,1,Mpped2-202,-42943,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,16,33,77015,ENSMUSG00000016386,conserved gene but different region,2,106650342,106650531,190,*,190,11,0.547368421,0.791666667,0.057894737,0.00000285,CpGisland,TRUE,U2,Pr-W
21004,cg23539011,0.0000154,0.00000543,2.841614664,0.004785991,gain,ns,-0.00000352,0.00000923,-0.381089813,0.703397644,neg,ns,-0.000731081,0.002704438,-0.270326445,0.787089003,neg,ns,0.103976156,0.000188612,0.000093,2.027965811,0.043418662,pos,ns,0.809129094,Gm19566,Gm19566_Intergenic_downstream,5,105974910,105974959,105974958,105974959,50,+,GCCTTATCATACCCTGATGGTTTAAATCTTTAAACAGAGCGTAACAGCCG,Distal Intergenic,5,105980573,105981182,610,2,Gm19566-201,6223,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,8,100503127,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1009,cg17744662,0.00000321,0.00000305,1.053603485,0.292884999,gain,ns,-0.00000197,0.00000518,-0.380853607,0.703572738,neg,ns,-0.001522761,0.001518544,-1.002776708,0.316750692,neg,ns,0.499282428,0.0000405,0.0000522,0.776159991,0.438246284,pos,ns,0.914587798,Grm1,Grm1_threeUTR,10,10698042,10698091,10698090,10698091,50,+,TCTTACACATTCACTGCAGTGTGGGGGTTTTCAAAGCTGCACATGTGCCG,3' UTR,10,10686059,11082356,396298,2,Grm1-201,384265,Grm1-201;Grm1-203;Grm1-202;Grm1-205,Grm1;Grm1;Grm1;Grm1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,7,14816,ENSMUSG00000019828,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22147,cg01214458,-0.0000575,0.0000126,-4.557265457,0.00000747,loss,ns,0.00000816,0.0000214,0.380838857,0.703583672,pos,ns,-0.017814557,0.006275496,-2.838749006,0.004828063,neg,ns,2.316227095,0.000356481,0.000215814,1.651797225,0.099588419,pos,ns,0.827303796,Mn1,Mn1_Exon,5,111420646,111420695,111420646,111420647,50,+,CGTGACCTTCAACAAGAAGAACCCGCCAGAGGGCAAGAGGAAACTGAGCC,"Exon (Mn1-201/Mn1, exon 1 of 2)",5,111417442,111457033,39592,1,Mn1-201,3204,Mn1-202;Mn1-201,Mn1;Mn1,3284;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,12,433938,ENSMUSG00000070576,conserved gene and region,5,111420646,111420829,184,*,184,13,0.64673913,0.675706215,0.070652174,2.47E-08,CpGisland,TRUE,U13,Hc-P
23041,cg23164054,-0.0000042,0.00000404,-1.038685935,0.299760288,loss,ns,0.00000261,0.00000686,0.380815507,0.703600982,pos,ns,0.002173555,0.002010847,1.080915385,0.280574926,pos,ns,0.551951142,-0.0000414,0.0000692,-0.598429668,0.549990259,neg,ns,0.885669164,Spred1,Spred1_Exon,2,117153011,117153060,117153011,117153012,50,+,CGAGCTGTGGTGATGACCCGAGATGACTCAAGTGGTGGATGGTTACCACT,"Exon (Spred1-201/Spred1, exon 2 of 7)",2,117121374,117182279,60906,1,Spred1-201,31637,Spred1-201;Spred1-202,Spred1;Spred1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,6,114715,ENSMUSG00000027351,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13802,cg17652017,0.00000123,0.00000494,0.249627631,0.803040657,gain,ns,0.00000319,0.00000839,0.38081547,0.703601009,pos,ns,0.005355446,0.002456751,2.179889834,0.030017729,pos,ns,1.522622171,-0.000232717,0.0000845,-2.754458683,0.00622624,neg,ns,0.887399836,Kcmf1,Kcmf1_Exon,6,72858831,72858880,72858831,72858832,50,-,CGTATAGCCCATTTTTCCACAATAGGGACAAGTAAAAGACTGTGGCTGCT,"Exon (Kcmf1-201/Kcmf1, exon 3 of 7)",6,72841114,72899979,58866,2,Kcmf1-201,41099,Kcmf1-201;Kcmf1-204;Kcmf1-206;Kcmf1-203;Kcmf1-205,Kcmf1;Kcmf1;Kcmf1;Kcmf1;Kcmf1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,2,74287,ENSMUSG00000055239,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24271,cg26026687,-0.000029,0.00000758,-3.823653628,0.000158951,loss,ns,-0.0000049,0.0000129,-0.380735099,0.703660591,neg,ns,-0.001449481,0.003771329,-0.384342257,0.700988302,neg,ns,0.154289229,-0.000433099,0.000129696,-3.339345642,0.000942248,neg,ns,0.824745953,Clstn3,Clstn3_Exon,6,124458582,124458631,124458582,124458583,50,-,CGGTCACAGCCCTTGGCCACATGGCTGGTCTGCAGCTCTATGGTGGCCTG,"Exon (Clstn3-202/Clstn3, exon 6 of 18)",6,124430759,124462744,31986,2,Clstn3-202,4113,Clstn3-202;Clstn3-201;Clstn3-207;Clstn3-206,Clstn3;Clstn3;Clstn3;Clstn3,0;0;-697;5470,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,6,232370,ENSMUSG00000008153,conserved gene and region,6,124458499,124458587,89,*,89,8,0.651685393,0.87254902,0.08988764,0.00000491,CpGisland,TRUE,U11,Tr-P
9874,cg01678549,-0.00000179,0.00000167,-1.073064823,0.284076627,loss,ns,0.00000108,0.00000283,0.380703261,0.703684194,pos,ns,0.000331925,0.000830382,0.399725215,0.689634189,pos,ns,0.161381217,-0.00000736,0.0000286,-0.25762661,0.796866022,neg,ns,0.076683025,Elf2,Elf2_fiveUTR,3,51277223,51277272,51277271,51277272,50,-,CCAGCTGGTTCGTGGGTCCCTCATGCAGAGACGTCGCCATGTTTATCCCG,5' UTR,3,51252720,51340663,87944,2,Elf2-212,63391,Elf2-212;Elf2-208;Elf2-201;Elf2-202;Elf2-203;Elf2-204;Elf2-206;Elf2-213;Elf2-207;Elf2-209;Elf2-211;Elf2-205,Elf2;Elf2;Elf2;Elf2;Elf2;Elf2;Elf2;Elf2;Elf2;Elf2;Elf2;Elf2,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,3,69257,ENSMUSG00000037174,conserved gene and region,3,51277042,51277272,231,*,231,27,0.705627706,0.969682836,0.116883117,7.75E-23,CpGisland,TRUE,U1,Pr-A
6696,cg24467057,0.0000111,0.00000544,2.047546441,0.04144696,gain,ns,0.00000352,0.00000924,0.380638149,0.703732465,pos,ns,-0.00658508,0.002705953,-2.433553131,0.015516242,neg,ns,1.809213466,0.000202967,0.0000931,2.181094481,0.029927666,pos,ns,0.733526512,Arap3,Arap3_Intergenic_upstream,18,38085217,38085266,38085217,38085218,50,-,CGTGCCTGGATGTCAAACTCAAGCGTGATTGCTGTTAATCACCTCCCAAA,Distal Intergenic,18,37996312,37998969,2658,2,Arap3-203,-86297,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,10,106952,ENSMUSG00000024451,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27543,cg17232504,-0.00000148,0.0000045,-0.329086164,0.742312779,loss,ns,0.00000291,0.00000765,0.380559359,0.703790878,pos,ns,0.002292746,0.002239788,1.02364434,0.306801421,pos,ns,0.513142633,-0.0000928,0.000077,-1.204702962,0.229236899,neg,ns,0.561744339,Gm11011,Gm11011_Intergenic_downstream,2,169445431,169445480,169445431,169445432,50,-,CGAAAAGCAGCATTAATTAAGTCATTGCCGGACTGTAATTGTGTTAAGAA,Distal Intergenic,2,169582845,169587745,4901,2,Gm11011-201,142314,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,10,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22941,cg16744551,0.0000898,0.00000894,10.03675515,1.04E-20,gain,yes,-0.00000578,0.0000152,-0.380510226,0.703827306,neg,ns,0.009265634,0.004451916,2.081268766,0.038229756,pos,ns,1.417598469,-0.000206378,0.000153101,-1.347988543,0.178646245,neg,ns,0.100044027,Isl1,Isl1_fiveUTR,13,116309680,116309729,116309728,116309729,50,-,TTACTCAAACTTCTCTGCTCCAACTCAGCTCCATCGCCATTGGTCTGACG,Promoter (<=1kb),13,116298281,116309689,11409,2,Isl1-201,0,Isl1-201;Isl1-202;Isl1-204;Isl1-205,Isl1;Isl1;Isl1;Isl1,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,14,16392,ENSMUSG00000042258,mapped to different genes,13,116309714,116310302,589,*,589,68,0.689303905,0.972135922,0.115449915,2.02E-56,CpGisland,TRUE,U3,Pr-B
25184,cg05094833,-0.00000259,0.000000718,-3.602000508,0.00036765,loss,ns,-0.000000464,0.00000122,-0.380505254,0.703830992,neg,ns,0.0006686,0.000357263,1.871450479,0.06222434,pos,ns,1.2060397,-0.0000285,0.0000123,-2.323174352,0.020816571,neg,ns,0.019537452,Tet2,Tet2_fiveUTR,3,133544299,133544348,133544347,133544348,50,-,CTACGAAAGCAGCCTAGCCTCCGCATCAATATTCATAAGGCAGTTTGACG,Promoter (<=1kb),3,133513457,133544302,30846,2,Tet2-203,0,Tet2-201;Tet2-204;Tet2-205;Tet2-203;Tet2-202,Tet2;Tet2;Tet2;Tet2;Tet2,0;0;0;0;-13,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,1,214133,ENSMUSG00000040943,conserved gene and region,3,133544302,133545331,1030,*,1030,117,0.699029126,0.934736744,0.113592233,1.07E-95,CpGisland,TRUE,U1,Pr-A
5930,cg24472748,-0.000100101,0.0000233,-4.297163249,0.0000232,loss,ns,-0.0000151,0.0000396,-0.380482288,0.703848019,neg,ns,-0.026063334,0.011593968,-2.248008054,0.025278234,neg,ns,1.59725327,0.000296517,0.000398716,0.743680336,0.457633161,pos,ns,0.602713083,Gm5614,Gm5614_Intergenic_upstream,9,35310401,35310450,35310449,35310450,50,+,AGACACTTCCTGATTACTCCTAGCTGGGTCTCATTAGCAGATTTAAAACG,Distal Intergenic,9,35281518,35281835,318,2,Gm5614-201,-28566,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,3,434394,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14167,cg06941007,0.0000531,0.0000144,3.692817297,0.000262025,gain,ns,0.00000929,0.0000244,0.380427362,0.703888742,pos,ns,0.036668023,0.007150656,5.127924617,0.000000517,pos,ns,6.286493205,-0.000936555,0.00024591,-3.808521272,0.000168531,neg,ns,0.299487753,Hoxd3,Hoxd3_Intron,2,74724698,74724747,74724698,74724699,50,+,CGCTTTTGTTCATCAATAACTCGTTGGCTTTGACCTGTCTGAACAAGTCG,"Intron (Hoxd3-203/Hoxd3, intron 1 of 2)",2,74711927,74748271,36345,1,Hoxd3-203,12771,Gm28230-201;Hoxd3-203;Hoxd4-203;Hoxd4-201;Hoxd4-202,Gm28230;Hoxd3;Hoxd4;Hoxd4;Hoxd4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,24,15434,ENSMUSG00000079277,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
20981,cg09998168,0.0000245,0.00000575,4.267539038,0.0000263,gain,ns,-0.00000372,0.00000977,-0.38040984,0.703901734,neg,ns,0.001610468,0.002862991,0.562512432,0.574173477,pos,ns,0.240956873,-0.0000479,0.0000985,-0.486786519,0.626753612,neg,ns,0.058063648,Spry2,Spry2_Promoter,14,105897356,105897405,105897404,105897405,50,+,TGTTGTCCCAGAGGATATATCGCATCCGGTCCCAGCTCATTGGCTCCGCG,Promoter (<=1kb),14,105891947,105896819,4873,2,Spry2-201,-537,Spry2-201,Spry2,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,8,12,24064,ENSMUSG00000022114,conserved gene and region,14,105896882,105897547,666,*,666,86,0.741741742,0.95483871,0.129129129,5.47E-76,CpGisland,TRUE,U1,Pr-A
13000,cg01965462,0.000027,0.0000119,2.271266596,0.023816222,gain,ns,-0.00000768,0.0000202,-0.380406841,0.703903957,neg,ns,0.000293828,0.005914018,0.049683354,0.960406717,pos,ns,0.017544811,0.00000375,0.000203383,0.018424943,0.985311707,pos,ns,0.245474423,Erbb4,Erbb4_Intron,1,69105003,69105052,69105051,69105052,50,+,TAAGAAATTAGCATTTCAAAAATATGCCACTTTCCCCTGAACTCCAAGCG,"Intron (Erbb4-201/Erbb4, intron 1 of 27)",1,68032186,69107756,1075571,2,Erbb4-201,2704,Erbb4-201;Erbb4-202;Erbb4-205,Erbb4;Erbb4;Erbb4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,13,13869,ENSMUSG00000062209,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
9203,cg09528948,0.0000156,0.0000119,1.312109141,0.190454055,gain,ns,-0.0000077,0.0000202,-0.380375757,0.703927004,neg,ns,-0.004385533,0.005932322,-0.739260715,0.460308094,neg,ns,0.336951389,0.000156704,0.000204012,0.768109596,0.44300678,pos,ns,0.401927998,Cadm1,Cadm1_Intron,9,47531888,47531937,47531936,47531937,50,+,GCTGTGCCTTTTGTTTACACGCTAGAGGACACACAGTTATGTAAACACCG,"Intron (Cadm1-204/Cadm1, intron 1 of 9)",9,47530173,47853385,323213,1,Cadm1-204,1715,Cadm1-204;Cadm1-209;Cadm1-206;Cadm1-202;Cadm1-203;Cadm1-207;Cadm1-205;Cadm1-211;Cadm1-210;Cadm1-208;Cadm1-201,Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,77,54725,ENSMUSG00000032076,conserved gene and region,9,47531796,47531946,151,*,151,10,0.622516556,0.683567225,0.066225166,0.00000296,CpGisland,TRUE,U3,Pr-B
14809,cg22418428,0.000100614,0.0000182,5.531908325,6.74E-08,gain,yes,-0.0000118,0.0000309,-0.380354716,0.703942605,neg,ns,0.008857732,0.009052283,0.978508136,0.328586063,pos,ns,0.483350862,0.0000942,0.000311307,0.302502411,0.762471964,pos,ns,0.437050944,Myo18a,Myo18a_Intergenic_downstream,11,77867763,77867812,77867763,77867764,50,+,CGATTTGCTCCTTAATTGTCCCCCAGCTAGGCTGCGCAGATGCCGCTCTT,Distal Intergenic,11,77857479,77865076,7598,1,Myo18a-216,10284,Myo18a-208;Myo18a-209;Myo18a-207;Myo18a-201;Myo18a-203;Myo18a-222;Myo18a-223;Myo18a-211;Myo18a-205;Myo18a-210;Myo18a-224;Myo18a-202;Myo18a-220;Myo18a-221;Myo18a-215;Myo18a-216,Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,18,360013,ENSMUSG00000000631,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21714,cg26260506,-0.00000351,0.00000142,-2.465907085,0.014207784,loss,ns,0.000000919,0.00000242,0.380286063,0.703993509,pos,ns,0.001748293,0.000707871,2.46979197,0.014057442,pos,ns,1.852093702,-0.0000177,0.0000243,-0.729011852,0.466544814,neg,ns,0.044202063,Prpf38b,Prpf38b_Exon,3,108911248,108911297,108911296,108911297,50,-,GGTCAGGATCATGGGGTTGAGGTTCATGGTCTTCTCGTTGCCCCAGAGCG,Promoter (<=1kb),3,108902805,108911696,8892,2,Prpf38b-204,399,Prpf38b-204;Prpf38b-201;Prpf38b-208;Prpf38b-206;Prpf38b-205;Prpf38b-207,Prpf38b;Prpf38b;Prpf38b;Prpf38b;Prpf38b;Prpf38b,0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,13,66921,ENSMUSG00000027881,conserved gene but different region,3,108911283,108911874,592,*,592,67,0.690878378,0.954654857,0.113175676,5.95E-55,CpGisland,TRUE,U1,Pr-A
5798,cg11570670,-0.00000322,0.00000152,-2.123949905,0.034465821,loss,ns,-0.000000979,0.00000257,-0.380253614,0.704017568,neg,ns,-0.000527759,0.000754129,-0.699826744,0.484560329,neg,ns,0.314652145,0.0000198,0.0000259,0.763991443,0.445453435,pos,ns,0.961112471,Pank1,Pank1_Exon,19,34821714,34821763,34821762,34821763,50,+,TTGATGCTACAGCAGATCCTTGAAGGCCAAATCGTTCATAGTCTCCTCCG,"Exon (Pank1-201/Pank1, exon 4 of 7)",19,34806940,34879455,72516,2,Pank1-201,57692,Pank1-201;Pank1-202;Pank1-204,Pank1;Pank1;Pank1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,75735,ENSMUSG00000033610,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15518,cg19123610,0.0000151,0.00000885,1.70689515,0.088842899,gain,ns,-0.00000571,0.000015,-0.380077997,0.704147789,neg,ns,0.00180474,0.00440341,0.40985044,0.682198737,pos,ns,0.166089089,0.0000214,0.000151433,0.141577401,0.887505779,pos,ns,0.796604332,Adgrv1,Adgrv1_Exon,13,81523548,81523597,81523548,81523549,50,+,CGGAACGTCGTCAGCCAGGACCTCTAACAACAAGGTTTGAATGGTTTCCC,"Exon (Adgrv1-201/Adgrv1, exon 31 of 90)",13,81095068,81633154,538087,2,Adgrv1-201,109557,Adgrv1-201;Adgrv1-202;Adgrv1-208;Adgrv1-212,Adgrv1;Adgrv1;Adgrv1;Adgrv1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,5,110789,ENSMUSG00000069170,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5869,cg01227261,0.00000272,0.00000357,0.761605258,0.446874636,gain,ns,-0.0000023,0.00000606,-0.379942287,0.704248424,neg,ns,0.002637145,0.00177628,1.484644513,0.138654117,pos,ns,0.858067229,-0.000140118,0.0000611,-2.293782565,0.022471659,neg,ns,0.935142922,Sox2,Sox2_Intergenic_downstream,3,35084798,35084847,35084846,35084847,50,+,CGTTGGAGTTTCCCTGTTATTTGTCTACTTTTTGAGGATTAGAACTTCCG,Distal Intergenic,3,34650405,34652461,2057,1,Sox2-201,434393,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,62,20674,ENSMUSG00000074637,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21178,cg05139200,0.000000634,0.0000134,0.047467697,0.962171041,gain,ns,-0.00000863,0.0000227,-0.379938404,0.704251304,neg,ns,-0.004513895,0.006651207,-0.678658087,0.497860844,neg,ns,0.302892029,-0.00000393,0.000228734,-0.017198053,0.986289679,neg,ns,0.818576531,Zfp644,Zfp644_Exon,5,106637145,106637194,106637193,106637194,50,-,AATGTTTTAGGGCAATTGGTACCAAACACACACTGAGGACACTGTAATCG,"Exon (Zfp644-204/Zfp644, exon 3 of 6)",5,106616739,106696830,80092,2,Zfp644-204,59636,Zfp644-204;Zfp644-201;Zfp644-205;Zfp644-203;Zfp644-208;Zfp644-209;Zfp644-213;Zfp644-206;Zfp644-216;Zfp644-207;Zfp644-212,Zfp644;Zfp644;Zfp644;Zfp644;Zfp644;Zfp644;Zfp644;Zfp644;Zfp644;Zfp644;Zfp644,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,10,52397,ENSMUSG00000049606,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16786,cg23211163,-0.00000442,0.00000155,-2.861522995,0.004502792,loss,ns,-0.000000998,0.00000263,-0.379921934,0.704263517,neg,ns,0.001012366,0.000769196,1.316135341,0.189100972,pos,ns,0.723306238,-0.000017,0.0000265,-0.643008973,0.520693598,neg,ns,0.057417928,Pcbp1,Pcbp1_fiveUTR,6,86525870,86525919,86525918,86525919,50,-,TGGTGAGAGTCACATTTAGTCCACTTTCAGTCACACCGGCATCCATGGCG,Promoter (<=1kb),6,86524492,86526321,1830,2,Pcbp1-201,402,Pcbp1-201,Pcbp1,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,15,23983,ENSMUSG00000051695,mapped to different genes,6,86525687,86527366,1680,*,1680,200,0.679166667,1.041169581,0.119047619,1.10E-167,CpGisland,TRUE,U1,Pr-A
11775,cg22509078,-0.0000022,0.00000196,-1.120056125,0.263556856,loss,ns,-0.00000127,0.00000333,-0.379769328,0.704376689,neg,ns,-0.000164666,0.000976347,-0.168655054,0.866177961,neg,ns,0.06239287,-0.000000132,0.0000336,-0.003941639,0.99685757,neg,ns,0.962255278,Cacul1,Cacul1_Exon,19,60543009,60543058,60543009,60543010,50,+,CGCATTAGGCTGTAAATGTGCTTTTCTGCAACATGTTCCGTAAACAGCTT,"Exon (Cacul1-201/Cacul1, exon 5 of 9)",19,60524696,60581025,56330,2,Cacul1-201,37967,Cacul1-201;Cacul1-202;Cacul1-203;Cacul1-204,Cacul1;Cacul1;Cacul1;Cacul1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,78832,ENSMUSG00000033417,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27804,cg05901920,0.0000271,0.00000801,3.390985747,0.000786632,gain,ns,-0.00000516,0.0000136,-0.379348221,0.704689013,neg,ns,0.014149964,0.003984174,3.55154298,0.000442467,pos,ns,3.354118881,-0.000333002,0.000137015,-2.430401015,0.015649246,neg,ns,0.2064052,Esrrg,Esrrg_Intron,1,187662542,187662591,187662590,187662591,50,-,AAGACATTTGTCCTTGAAACTGCACCAAACTCTTGGAAGAACCCAGAACG,"Intron (Esrrg-204/Esrrg, intron 2 of 3)",1,187608791,188043502,434712,1,Esrrg-204,53751,Esrrg-204;Esrrg-203;Esrrg-205,Esrrg;Esrrg;Esrrg,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,60,26381,ENSMUSG00000026610,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
16480,cg22519116,0.00000585,0.00000301,1.9475977,0.052365649,gain,ns,-0.00000194,0.00000511,-0.379332502,0.704700672,neg,ns,0.002111319,0.001495933,1.411372548,0.159137638,pos,ns,0.798227093,-0.000108615,0.0000514,-2.111274917,0.035548886,neg,ns,0.951632907,Dmd,Dmd_Exon,X,85144113,85144162,85144113,85144114,50,-,CGAATGGGCTACCTGCCAGTGCAGACTGTCTTAGAGGGGGACAACATGGA,"Exon (Dmd-203/Dmd, exon 70 of 79)",20,82948903,85206141,2257239,1,Dmd-203,2195210,Dmd-203;Dmd-215;Dmd-210;Dmd-207;Dmd-214;Dmd-212;Dmd-202;Dmd-201,Dmd;Dmd;Dmd;Dmd;Dmd;Dmd;Dmd;Dmd,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,20,28,13405,ENSMUSG00000045103,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
31,cg07129960,-0.0000037,0.00000449,-0.823526171,0.410841934,loss,ns,0.00000289,0.00000763,0.379291841,0.704730832,pos,ns,-0.00204117,0.002234655,-0.913416013,0.361733632,neg,ns,0.441611111,-0.0000484,0.0000768,-0.629773601,0.529306603,neg,ns,0.799091703,Pla2g3,Pla2g3_Exon,11,3490194,3490243,3490194,3490195,50,-,CGTGGCCTTCTTCAACGTGCTGGAGATCCCCTGCTTTGTGCTGGAGGAGC,"Exon (Pla2g3-202/Pla2g3, exon 3 of 7)",11,3488284,3494166,5883,1,Pla2g3-202,1910,Inpp5j-201;Inpp5j-204;Inpp5j-202;Inpp5j-205;Inpp5j-203;Pla2g3-202;Pla2g3-201;Pla2g3-203,Inpp5j;Inpp5j;Inpp5j;Inpp5j;Inpp5j;Pla2g3;Pla2g3;Pla2g3,0;11891;14528;14531;14543;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,237625,ENSMUSG00000034579,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11750,cg05357426,-0.0000519,0.0000109,-4.779813148,0.00000271,loss,ns,0.000007,0.0000185,0.37920686,0.704793867,pos,ns,-0.017404243,0.005405276,-3.219861871,0.001418546,neg,ns,2.848156662,0.000272749,0.000185887,1.46728611,0.143312018,pos,ns,0.858712943,Abi2,Abi2_Exon,1,60447246,60447295,60447294,60447295,50,+,TCTTCTTTTTGTAGGCGGCACTCCCCCTATCGCACACTGGAGCCAGTGCG,"Exon (Abi2-201/Abi2, exon 5 of 9)",1,60409619,60481158,71540,1,Abi2-201,37627,Abi2-201;Abi2-206;Abi2-207;Abi2-210;Abi2-212;Abi2-208;Abi2-205;Abi2-202;Abi2-204;Abi2-203;Abi2-211,Abi2;Abi2;Abi2;Abi2;Abi2;Abi2;Abi2;Abi2;Abi2;Abi2;Abi2,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,9,329165,ENSMUSG00000026782,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3702,cg09992382,0.0000475,0.00000779,6.095131485,3.24E-09,gain,yes,-0.00000502,0.0000132,-0.379147986,0.704837539,neg,ns,0.006509636,0.00387777,1.678706126,0.094216995,pos,ns,1.025870752,-0.000287829,0.000133356,-2.158344659,0.031668483,neg,ns,0.670477511,Pou2f2,Pou2f2_threeUTR,7,25092931,25092980,25092931,25092932,50,-,CGGCTGCCCCCAGCACCAGATTCCCGCTGCCATCAAGGCTGGTAAGGGGC,3' UTR,7,25087344,25132488,45145,2,Pou2f2-203,39508,Pou2f2-203;Pou2f2-209;Pou2f2-201;Pou2f2-206;Pou2f2-204;Pou2f2-205;Pou2f2-202;Pou2f2-210,Pou2f2;Pou2f2;Pou2f2;Pou2f2;Pou2f2;Pou2f2;Pou2f2;Pou2f2,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,29,18987,ENSMUSG00000008496,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8123,cg11880652,0.000013,0.00000222,5.874626598,1.09E-08,gain,yes,-0.00000143,0.00000377,-0.378876265,0.70503911,neg,ns,0.001820613,0.001103312,1.650134056,0.099928307,pos,ns,1.000311469,1.08E-08,0.0000379,0.000284453,0.999773222,pos,ns,0.061949051,Pax2,Pax2_fiveUTR,19,44756589,44756638,44756637,44756638,50,+,GTGGTGGAATCTATTGCCTTTGTCTGACAAGTCATCCATCTCCCGGCGCG,Promoter (<=1kb),19,44756045,44837851,81807,1,Pax2-203,544,Pax2-203;Pax2-201;Pax2-202,Pax2;Pax2;Pax2,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,166,18504,ENSMUSG00000004231,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
8169,cg03795866,-0.00000653,0.00000283,-2.309250684,0.021586832,loss,ns,0.00000182,0.0000048,0.378704868,0.705166267,pos,ns,-0.000789491,0.001406739,-0.561220393,0.575052757,neg,ns,0.24029231,0.0000539,0.0000484,1.113408318,0.266395674,pos,ns,0.958563012,Pax2,Pax2_Intron,19,44817478,44817527,44817478,44817479,50,-,CGATCACAGCGAATTACTCTGGTGATAAATCAGGGGGCAGCTTCACCCCC,"Intron (Pax2-203/Pax2, intron 6 of 9)",19,44756045,44837851,81807,1,Pax2-203,61433,Pax2-203;Pax2-201;Pax2-202,Pax2;Pax2;Pax2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,35,166,18504,ENSMUSG00000004231,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26617,cg10304692,0.00000842,0.00000355,2.371414473,0.018330977,gain,ns,0.00000228,0.00000603,0.378647237,0.705209025,pos,ns,0.004601978,0.001767782,2.603249336,0.009678623,pos,ns,2.014186437,-0.000193623,0.0000608,-3.184909912,0.001595282,neg,ns,0.903317182,Pex14,Pex14_Intron,4,148988940,148988989,148988988,148988989,50,+,AAGCATTTGCTTCGACCTTGCTCTTCTCATTGGGGCATGAAATTACGACG,"Intron (Pex14-201/Pex14, intron 3 of 8)",4,148960535,149099876,139342,2,Pex14-201,110887,Pex14-201;Pex14-202;Pex14-205;Pex14-203,Pex14;Pex14;Pex14;Pex14,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,41,48,56273,ENSMUSG00000028975,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17253,cg19556450,0.00000011,0.00000171,0.064585544,0.948545622,gain,ns,-0.0000011,0.0000029,-0.378609745,0.705236842,neg,ns,-0.00158752,0.000849253,-1.869313982,0.06252182,neg,ns,1.20396839,0.0000242,0.0000292,0.827417377,0.408637005,pos,ns,0.055821163,Efna3,Efna3_Exon,3,89315797,89315846,89315797,89315798,50,-,CGCAGACTCACCCAGCACGTTGATCTTCACATTGGGGCCCATGGTGAACT,"Exon (Efna3-201/Efna3, exon 4 of 5)",3,89313899,89322965,9067,2,Efna3-201,7119,Efna3-201;Efna3-203;Efna3-202,Efna3;Efna3;Efna3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,6,13638,ENSMUSG00000028039,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
4144,cg05425369,-0.0000184,0.00000564,-3.267012464,0.001208781,loss,ns,0.00000362,0.00000958,0.378142439,0.705583586,pos,ns,0.00293075,0.002805595,1.044608898,0.297017638,pos,ns,0.52721776,-0.0000462,0.0000965,-0.478848947,0.632383667,neg,ns,0.90447607,Gm12074,Gm12074_Intergenic_upstream,11,26962336,26962385,26962384,26962385,50,+,GTTTATTCATCACCTGCTTATTTATCTCTTTGCATTTGGCAGGCACATCG,Distal Intergenic,11,27051697,27051915,219,1,Gm12074-201,-89312,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,10,100042367,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2470,cg10446885,-0.0000209,0.0000153,-1.368789195,0.172056206,loss,ns,0.00000981,0.000026,0.378114387,0.705604403,pos,ns,0.001893481,0.007604613,0.24899108,0.803532565,pos,ns,0.094996518,-0.000500499,0.000261522,-1.913793726,0.056567209,neg,ns,0.605037248,Gm4849,Gm4849_Intergenic_downstream,1,19700110,19700159,19700110,19700111,50,+,CGCTTTCAGAATTTAATTGGCTCCTTAGCAATTATTAGTTTTTGCTGTTA,Distal Intergenic,1,19330939,19333184,2246,1,Gm4849-201,369171,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,10,226901,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26729,cg10773798,0.00000106,0.00000407,0.261949426,0.793534403,gain,ns,0.00000261,0.00000691,0.377944462,0.705730505,pos,ns,0.003842672,0.002023419,1.899098212,0.058479769,pos,ns,1.232994354,-0.000176467,0.0000696,-2.535977029,0.011704188,neg,ns,0.896171665,Huwe1,Huwe1_Intron,X,151906530,151906579,151906578,151906579,50,-,TAACATGTTACTACTGCTTGCCCAAAGTTTGTCACTTCTTACTTGGTTCG,"Intron (Huwe1-201/Huwe1, intron 52 of 82)",20,151803327,151935417,132091,1,Huwe1-201,103203,Huwe1-201;Huwe1-202;Huwe1-219;Huwe1-208;Huwe1-215,Huwe1;Huwe1;Huwe1;Huwe1;Huwe1,0;0;0;-2266;-2266,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,28,59026,ENSMUSG00000025261,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10431,cg04721110,-0.00000459,0.00000384,-1.195544856,0.232787953,loss,ns,-0.00000246,0.00000652,-0.377879706,0.705778563,neg,ns,-0.002985871,0.001909442,-1.563740408,0.118898769,neg,ns,0.92482264,-0.0000879,0.0000657,-1.339285543,0.181458839,neg,ns,0.936385156,Npas3,Npas3_Intron,12,53527145,53527194,53527145,53527146,50,-,CGAGACAAATGGAACATTATTGGCTTATGGGCTGTAGTAAATAATTTAGT,"Intron (Npas3-204/Npas3, intron 2 of 10)",12,53248157,54069532,821376,1,Npas3-204,278988,Npas3-204;Npas3-201;Npas3-203,Npas3;Npas3;Npas3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,83,103,27386,ENSMUSG00000021010,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23028,cg13706883,-0.0000113,0.0000049,-2.302039919,0.021995447,loss,ns,-0.00000315,0.00000833,-0.37787518,0.705781921,neg,ns,-0.00229651,0.002439223,-0.941492277,0.347185729,neg,ns,0.459438134,-0.00000348,0.0000839,-0.041535958,0.966895366,neg,ns,0.857057966,Mgat5b,Mgat5b_Exon,11,116968470,116968519,116968518,116968519,50,+,AACTGGGGCTACTGGAACCTCAACCCCAAGCAGTTCATGACCATGTTTCG,"Exon (Mgat5b-201/Mgat5b, exon 10 of 18)",11,116918863,116986948,68086,1,Mgat5b-201,49607,Mgat5b-201;Mgat5b-204;Mgat5b-203;Mgat5b-202,Mgat5b;Mgat5b;Mgat5b;Mgat5b,0;0;0;-4554,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,3,268510,ENSMUSG00000043857,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9906,cg17840681,-0.000031,0.00000612,-5.070605952,0.000000684,loss,yes,0.00000393,0.0000104,0.377818125,0.705824266,pos,ns,-0.004711441,0.003045868,-1.546830219,0.122924423,neg,ns,0.910361823,-0.0000356,0.000104747,-0.340187015,0.73394609,neg,ns,0.927529014,Ppargc1a,Ppargc1a_Intron,5,51495022,51495071,51495070,51495071,50,+,CATTTCAATGTTCCTACTCAGCAACATGTAACTAACAAGACCCTACAGCG,"Intron (Ppargc1a-203/Ppargc1a, intron 4 of 12)",5,51454250,51553922,99673,2,Ppargc1a-203,58851,Ppargc1a-203;Ppargc1a-201;Ppargc1a-205;Ppargc1a-204;Ppargc1a-202,Ppargc1a;Ppargc1a;Ppargc1a;Ppargc1a;Ppargc1a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,13,19017,ENSMUSG00000029167,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2436,cg14273280,0.0000057,0.00000995,0.572594002,0.567334663,gain,ns,0.00000639,0.0000169,0.377738723,0.705883196,pos,ns,0.001382539,0.004954523,0.279045801,0.780395741,pos,ns,0.107685109,0.000206553,0.000170386,1.212266721,0.226333394,pos,ns,0.176211796,Ptf1a,Ptf1a_Intergenic_downstream,2,19451167,19451216,19451167,19451168,50,+,CGTGTTGGCATGGTTTGCCTGTCTTTAATGTACCATTAACTATTGTCTTT,Distal Intergenic,2,19445663,19447501,1839,1,Ptf1a-201,5504,Ptf1a-201,Ptf1a,5504,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,14,21,19213,ENSMUSG00000026735,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
18086,cg20989633,-0.0000114,0.00000261,-4.387795019,0.0000157,loss,ns,0.00000167,0.00000443,0.377640027,0.705956448,pos,ns,-0.003304923,0.001298222,-2.545729693,0.011388865,neg,ns,1.943519547,0.0000815,0.0000446,1.826461322,0.068742417,pos,ns,0.966326292,Magi1,Magi1_threeUTR,6,93694172,93694221,93694172,93694173,50,-,CGACCTATTTTGTGAGGCATAGCCACACATGCATTGCCTGCTTTGATATT,3' UTR,6,93675455,94283322,607868,2,Magi1-201,589101,Magi1-201;Magi1-202;Magi1-208;Magi1-203;Magi1-206;Magi1-209;Magi1-205,Magi1;Magi1;Magi1;Magi1;Magi1;Magi1;Magi1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,18,14924,ENSMUSG00000045095,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6898,cg14029538,0.0000179,0.00000498,3.598429263,0.000372527,gain,ns,0.00000319,0.00000846,0.377632701,0.705961886,pos,ns,-0.003845743,0.002477554,-1.552233699,0.121626597,neg,ns,0.914971443,0.000217557,0.0000852,2.553402281,0.011146144,pos,ns,0.1282055,Fyn,Fyn_Intron,10,39370478,39370527,39370526,39370527,50,+,TGTTGTTTTAATGTCAGGGATGATGTAATCACTTAATAATTGATGCCCCG,"Intron (Fyn-208/Fyn, intron 1 of 4)",10,39368855,39515668,146814,1,Fyn-208,1623,Fyn-208;Fyn-201;Fyn-202;Fyn-204,Fyn;Fyn;Fyn;Fyn,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,6,14360,ENSMUSG00000019843,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10429,cg24081433,0.0000166,0.0000028,5.932571039,7.97E-09,gain,yes,-0.00000179,0.00000475,-0.377567897,0.706009984,neg,ns,0.003731101,0.001391398,2.681548688,0.007720707,pos,ns,2.112342935,0.0000744,0.0000479,1.555218786,0.12091426,pos,ns,0.082496241,Septin8,Septin8_fiveUTR,11,53519877,53519926,53519925,53519926,50,-,GGAGTTTCCAGGAAGTGGCCATATTGGATCCATTCAGCCGCAGCCGCCCG,Promoter (<=1kb),11,53519908,53541898,21991,1,Septin8-203,0,Septin8-205;Septin8-201;Septin8-204;Septin8-202;Septin8-203;Septin8-207,Septin8;Septin8;Septin8;Septin8;Septin8;Septin8,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,6,9,,NA,mapped to different genes,11,53519915,53520270,356,*,356,48,0.738764045,0.992334495,0.134831461,1.12E-43,CpGisland,TRUE,U1,Pr-A
16622,cg06468945,0.000012,0.0000166,0.7260178,0.468375633,gain,ns,-0.0000106,0.0000281,-0.377502543,0.706058493,neg,ns,0.007953455,0.008244754,0.964668487,0.3354628,pos,ns,0.474355632,-0.000172914,0.000283536,-0.609846476,0.54241026,neg,ns,0.802965139,Bcas3,Bcas3_Intron,11,85641027,85641076,85641075,85641076,50,+,GCAAGCTGCAAACTCTATTGAATGGAAAGTATTATCGCTGGCCACAAACG,"Intron (Bcas3-205/Bcas3, intron 24 of 27)",11,85353167,85826058,472892,1,Bcas3-205,287860,Bcas3-205;Bcas3-206;Bcas3-201;Bcas3-202;Bcas3-216;Bcas3-212;Bcas3-203;Bcas3-207,Bcas3;Bcas3;Bcas3;Bcas3;Bcas3;Bcas3;Bcas3;Bcas3,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,24,192197,ENSMUSG00000059439,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3666,cg02795927,0.0000501,0.0000188,2.664815716,0.008106314,gain,ns,0.0000121,0.000032,0.377399781,0.70613477,pos,ns,0.008841656,0.00936517,0.944099898,0.345853821,pos,ns,0.461107422,0.000108482,0.000322067,0.336830751,0.736472406,pos,ns,0.717260587,Erfl,Erfl_Promoter,7,24952512,24952561,24952560,24952561,50,+,GCGCCACGGCCGGAGTGGGTGATCAATATTCGATTTAGGTTTTAATTCCG,Promoter (8-9kb),7,24927445,24944494,17050,2,Erfl-201,-8018,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,29,36,,NA,mapped to different genes,7,24952497,24952630,134,*,134,13,0.649253731,0.921693122,0.097014925,4.65E-10,CpGisland,TRUE,U13,Hc-P
16100,cg15430884,-0.0000218,0.00000423,-5.157197803,0.000000448,loss,yes,-0.00000271,0.00000719,-0.377280508,0.706223306,neg,ns,-0.002043344,0.002106079,-0.970211984,0.332697207,neg,ns,0.477950845,-0.000018,0.0000724,-0.248347691,0.804029837,neg,ns,0.932101845,Bnc2,Bnc2_Intron,4,84406292,84406341,84406340,84406341,50,+,TCCAGTTAATTAAGATGCTCCTATAAACAATTAAGCTTCCTGTAGGATCG,"Intron (Bnc2-201/Bnc2, intron 5 of 7)",4,84275095,84675034,399940,2,Bnc2-201,268693,Bnc2-201;Bnc2-202;Bnc2-214;Bnc2-215;Bnc2-206;Bnc2-211;Bnc2-205;Bnc2-217;Bnc2-207;Bnc2-212;Bnc2-203;Bnc2-209;Bnc2-221;Bnc2-204;Bnc2-220;Bnc2-208,Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,91,242509,ENSMUSG00000028487,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23075,cg07018026,0.0000622,0.0000133,4.672918967,0.00000443,gain,ns,-0.00000853,0.0000226,-0.377275747,0.70622684,neg,ns,0.033417278,0.006626975,5.042613869,0.000000783,pos,ns,6.106342247,-0.000860898,0.000227901,-3.777507205,0.000189899,neg,ns,0.31134307,Rnf220,Rnf220_Intron,4,117281166,117281215,117281166,117281167,50,-,CGGCGAGTTTTACACTGGAATTAGTTACAGATGCAGTTACGGTGTCTTGT,"Intron (Rnf220-201/Rnf220, intron 8 of 14)",4,117271463,117497052,225590,2,Rnf220-201,215837,Rnf220-201;Rnf220-203;Rnf220-212;Rnf220-202;Rnf220-205;Rnf220-209;Rnf220-213;Rnf220-210;Rnf220-206;Rnf220-208,Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21509,cg07792001,-0.0000166,0.00000874,-1.901495967,0.058164075,loss,ns,-0.0000056,0.0000148,-0.377256916,0.706240819,neg,ns,-0.003934259,0.004349974,-0.904432754,0.366468299,neg,ns,0.435963588,-0.0000532,0.000149595,-0.355858955,0.722188235,neg,ns,0.633268825,Gm13916,Gm13916_Intergenic_downstream,2,108033634,108033683,108033682,108033683,50,+,TGACGCTTTGGACAAGCTGTCCTGATTCAGCAGGAGAAATCTGAAAATCG,Distal Intergenic,2,108446457,108447084,628,2,Gm13916-201,413401,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,100043078,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
221,cg19603862,0.0000224,0.0000102,2.187640478,0.029442338,gain,ns,-0.00000656,0.0000174,-0.376989633,0.706439239,neg,ns,0.035457311,0.005094457,6.959978917,2.03E-11,pos,yes,10.69171971,-0.000833003,0.000175198,-4.754639555,0.00000305,neg,ns,0.829816698,Nf2,Nf2_Exon,11,4794856,4794905,4794856,4794857,50,+,CGAAGCTTTGAGGAGTTAAACTTGAAGACATCAATTTTCTTATCCAGTGG,"Exon (Nf2-205/Nf2, exon 9 of 16)",11,4765845,4849536,83692,2,Nf2-205,54631,Nf2-205;Nf2-202;Nf2-201;Nf2-203;Nf2-204;Nf2-209;Nf2-211;Nf2-210;Nf2-207;Nf2-206,Nf2;Nf2;Nf2;Nf2;Nf2;Nf2;Nf2;Nf2;Nf2;Nf2,0;0;0;0;0;0;0;0;0;25491,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,18016,ENSMUSG00000009073,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22934,cg16270526,0.000146118,0.0000173,8.470280166,9.98E-16,gain,yes,-0.000011,0.0000293,-0.376963234,0.706458838,neg,ns,0.035401141,0.008585845,4.12319826,0.000048,pos,ns,4.318507562,-0.00110888,0.000295266,-3.755523992,0.000206567,neg,ns,0.417032885,Isl1,Isl1_Exon,13,116303065,116303114,116303113,116303114,50,+,TGCTGCTGGAGTTGCTTCATCATGATGCTTCGCTTCTTGTCCTTGCACCG,"Exon (Isl1-201/Isl1, exon 4 of 6)",13,116298281,116309689,11409,2,Isl1-201,6575,Isl1-201;Isl1-202;Isl1-203;Isl1-204;Isl1-205,Isl1;Isl1;Isl1;Isl1;Isl1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,14,16392,ENSMUSG00000042258,conserved gene and region,13,116303095,116303375,281,*,281,20,0.612099644,0.761517615,0.071174377,1.28E-12,CpGisland,TRUE,U13,Hc-P
20028,cg04111154,-0.0000679,0.0000214,-3.175782958,0.001644675,loss,ns,0.0000137,0.0000363,0.376816167,0.706568024,pos,ns,-0.011671869,0.010633697,-1.097630345,0.273217772,neg,ns,0.563491055,-0.00000786,0.000365692,-0.021498959,0.982861465,neg,ns,0.488319397,Rarg,Rarg_Intron,15,102243996,102244045,102243996,102243997,50,-,CGGAGCTTCAAACAAACTCTTTATAACCGGCTGTAAACGCTCCCAGCTGC,"Intron (Rarg-201/Rarg, intron 3 of 9)",15,102234938,102257517,22580,2,Rarg-201,13472,Rarg-201;Rarg-202;Rarg-205;Rarg-204;Rarg-203;Rarg-206,Rarg;Rarg;Rarg;Rarg;Rarg;Rarg,0;0;0;-407;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,3,19411,ENSMUSG00000001288,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
25489,cg21826154,0.0000628,0.0000145,4.342547818,0.0000191,gain,ns,-0.00000926,0.0000246,-0.37675413,0.706614084,neg,ns,0.046209851,0.007199731,6.41827495,5.16E-10,pos,ns,9.287431694,-0.001583366,0.000247598,-6.394903428,5.91E-10,neg,yes,0.315219956,Nr5a2,Nr5a2_Intron,1,136912070,136912119,136912118,136912119,50,+,AGAATGTCTCTCCTCAAATGAAATAATATATCTTTGAAAGCCAATGCCCG,"Intron (Nr5a2-201/Nr5a2, intron 6 of 8)",1,136842571,136960448,117878,2,Nr5a2-201,48329,Nr5a2-201;Nr5a2-202;Nr5a2-203;Nr5a2-205;Nr5a2-204,Nr5a2;Nr5a2;Nr5a2;Nr5a2;Nr5a2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,5,26424,ENSMUSG00000026398,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
377,cg22284236,-0.000057,0.00000941,-6.064361671,3.85E-09,loss,yes,-0.00000602,0.000016,-0.376743779,0.706621769,neg,ns,-0.013614528,0.004681486,-2.90816408,0.003898085,neg,ns,2.409148658,0.000161055,0.000160996,1.000364813,0.317914197,pos,ns,0.681928908,Sf3b2,Sf3b2_Exon,19,5274469,5274518,5274517,5274518,50,-,TCCTTATATTTCTTGCTGCCCCCACGGCTGTCCTGGGGCTGAGCTTTCCG,"Exon (Sf3b2-208/Sf3b2, exon 8 of 8)",19,5273932,5284408,10477,2,Sf3b2-208,9890,Pacs1-201;Pacs1-205;Pacs1-202;Pacs1-206;Pacs1-203;Sf3b2-208;Sf3b2-201,Pacs1;Pacs1;Pacs1;Pacs1;Pacs1;Sf3b2;Sf3b2,-1350;-1441;-1367;-1362;-1762;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,319322,ENSMUSG00000024853,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2849,cg22004739,0.00000119,0.000000516,2.302483603,0.021970111,gain,ns,-0.00000033,0.000000877,-0.376673006,0.706674316,neg,ns,0.0000777,0.000256946,0.302506676,0.762468716,pos,ns,0.11777797,-0.00001,0.00000884,-1.133634838,0.257823677,neg,ns,0.015396012,Zfp503,Zfp503_fiveUTR,14,21987945,21987994,21987993,21987994,50,-,ATGGGAGCCCGAGGTGATTGGAGGGTCAAGGGGATGTGACGCGTCCCGCG,5' UTR,14,21983959,21989601,5643,2,Zfp503-201,1607,Zfp503-201,Zfp503,0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,27,218820,ENSMUSG00000039081,mapped to different genes,14,21987271,21988006,736,*,736,86,0.713315217,0.928039411,0.116847826,1.05E-71,CpGisland,TRUE,U3,Pr-B
25500,cg04621100,-0.0000299,0.00000555,-5.392385489,0.000000138,loss,yes,-0.00000355,0.00000944,-0.376572573,0.706748888,neg,ns,-0.003432126,0.002764172,-1.241646948,0.215305472,neg,ns,0.666944933,-0.000123299,0.0000951,-1.297072597,0.195570724,neg,ns,0.86581389,Mgmt,Mgmt_Intron,7,137002647,137002696,137002647,137002648,50,+,CGCGTTGGGTTGATAGCATTCTGCTATCATAATTAGCTTAAGCTTTGGGT,"Intron (Mgmt-201/Mgmt, intron 2 of 4)",7,136894614,137130266,235653,1,Mgmt-201,108033,Mgmt-201,Mgmt,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,16,17314,ENSMUSG00000054612,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8353,cg03062698,0.0000762,0.0000111,6.855269955,3.85E-11,gain,yes,-0.00000711,0.0000189,-0.376502825,0.706800677,neg,ns,0.019426876,0.00553516,3.509722372,0.000515068,pos,ns,3.288135085,-0.000321226,0.000190354,-1.687519197,0.092509386,neg,ns,0.407586135,Zeb2,Zeb2_Intron,2,45044871,45044920,45044871,45044872,50,+,CGGTAATGATTGCAGATCGTGTCAACTAAAATCTGTTTGGATTTCTGTAA,"Intron (Zeb2-212/Zeb2, intron 3 of 10)",2,44983632,45117395,133764,2,Zeb2-212,72475,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-218;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3339,cg17100219,-0.000021,0.00000453,-4.645689033,0.00000502,loss,ns,-0.00000289,0.00000769,-0.376446892,0.706842209,neg,ns,-0.006099037,0.00225249,-2.70768719,0.007151329,neg,ns,2.145613255,0.00015213,0.0000775,1.963905769,0.050434371,pos,ns,0.924074151,Gm11890,Gm11890_Intergenic_upstream,4,23732615,23732664,23732615,23732616,50,+,CGGCAGCAGTGACAGCCATGAATCATGGTAGGCTACTCCGGGGCCTTTAC,Distal Intergenic,4,23659928,23660344,417,2,Gm11890-201,-72271,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,15,32,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14781,cg03534188,-0.0000938,0.0000198,-4.732495684,0.00000338,loss,ns,-0.0000127,0.0000337,-0.376421728,0.706860895,neg,ns,0.049172428,0.009860482,4.986817701,0.00000102,pos,ns,5.989797224,-0.001478199,0.000339101,-4.359167911,0.0000178,neg,ns,0.527677633,Gm11146,Gm11146_Intron,16,77636736,77636785,77636736,77636737,50,-,CGATTAGATGGCTGGAAAGAGGACTCTTTGTTTAGCCCTTGTGTGGGGAC,"Intron (Mir99ahg-211/Mir99ahg-211, intron 5 of 6)",16,77588578,77602094,13517,2,Gm11146-201,-34691,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,21,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25190,cg04919112,-0.00000157,0.00000149,-1.04996114,0.294553808,loss,ns,0.000000954,0.00000253,0.376342247,0.706919915,pos,ns,-0.000692319,0.000742417,-0.932520667,0.351793217,neg,ns,0.453712538,0.0000157,0.0000255,0.616867697,0.537774769,pos,ns,0.961888925,Zdhhc18,Zdhhc18_threeUTR,4,133605884,133605933,133605932,133605933,50,-,AGGCACAGATGGTGGCAGATGGGCCACAGGTTAGGCAGGTGGAGGTGCCG,3' UTR,4,133605299,133633469,28171,2,Zdhhc18-201,27536,Sfn-201;Zdhhc18-201;Zdhhc18-202;Zdhhc18-204,Sfn;Zdhhc18;Zdhhc18;Zdhhc18,-3716;0;0;7101,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,2,503610,ENSMUSG00000037553,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25550,cg01432993,0.0000382,0.00000849,4.497624755,0.00000973,gain,ns,-0.00000543,0.0000144,-0.376319042,0.706937147,neg,ns,0.016518585,0.004227861,3.907079008,0.00011473,pos,ns,3.940324648,-0.000501571,0.000145396,-3.449696925,0.000638957,neg,ns,0.191406792,Ebf3,Ebf3_Intron,7,137208946,137208995,137208994,137208995,50,+,TAATTTGTATTGATCTCCCAGCTTCTTCCCAATTTTGCTTACTGACCTCG,"Intron (Ebf3-204/Ebf3, intron 10 of 15)",7,137193673,137314445,120773,2,Ebf3-204,105450,Ebf3-204;Ebf3-201;Ebf3-202;Ebf3-203;Ebf3-208;Ebf3-205,Ebf3;Ebf3;Ebf3;Ebf3;Ebf3;Ebf3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,62,84,13593,ENSMUSG00000010476,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10844,cg08493391,0.00000309,0.00000102,3.028814128,0.002661571,gain,ns,0.000000652,0.00000173,0.376277877,0.706967716,pos,ns,0.000131482,0.000507893,0.25887782,0.795901321,pos,ns,0.099140774,0.0000122,0.0000175,0.699164105,0.484973718,pos,ns,0.966736765,Vti1a,Vti1a_threeUTR,19,55626747,55626796,55626795,55626796,50,+,GGCTGAAATTAATGGTGAACAAAATTGTGCGGCTCTGGCCATCCCATGCG,3' UTR,19,55316350,55627309,310960,1,Vti1a-202,310397,Vti1a-202;Vti1a-201,Vti1a;Vti1a,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,8,32,53611,ENSMUSG00000024983,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25648,cg22821358,0.0000469,0.00000973,4.814286498,0.00000231,gain,ns,-0.00000622,0.0000165,-0.37621738,0.707012641,neg,ns,0.003050352,0.004843529,0.629778884,0.529303151,pos,ns,0.276295521,0.0000886,0.000166569,0.531878947,0.59519079,pos,ns,0.836123094,Ptprc,Ptprc_Exon,1,137966672,137966721,137966720,137966721,50,-,TTGAACTGTGTGGACAAGCTCACTGAACAATGAATGCAACTGTGGCCCCG,"Exon (Mir181a-1hg-201/Mir181a-1hg-201, exon 1 of 1)",1,138112030,138115474,3445,2,Ptprc-211,148802,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,19264,ENSMUSG00000026395,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11302,cg22298461,-0.0000128,0.00000605,-2.123455052,0.034507568,loss,ns,-0.00000386,0.0000103,-0.376216288,0.707013452,neg,ns,0.001510773,0.00300913,0.502063202,0.615979475,pos,ns,0.210433759,-0.0000907,0.000103484,-0.876514439,0.381429135,neg,ns,0.943900628,Gm13531,Gm13531_Intergenic_upstream,2,57517746,57517795,57517746,57517747,50,-,CGTGAAATTTGAATGACAGGGCTAAAGTCTTTTACTCATAATTTTGTGTT,Distal Intergenic,2,57425167,57425709,543,2,Gm13531-201,-92086,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,10,271788,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27699,cg22531162,0.00000375,0.00000347,1.081647634,0.280249819,gain,ns,0.00000222,0.00000589,0.37618545,0.707036353,pos,ns,-0.002353626,0.001725299,-1.364183992,0.173499235,neg,ns,0.760702435,0.00011922,0.0000593,2.009342697,0.045367265,pos,ns,0.93421033,Zbtb18,Zbtb18_Exon,1,177447255,177447304,177447303,177447304,50,+,CTTTTACAAGGACCAGCTGGACAAAAGAGACATTGTTCATCTGAACAGCG,"Exon (Zbtb18-211/Zbtb18, exon 3 of 3)",1,177442466,177447486,5021,1,Zbtb18-211,4789,Zbtb18-209;Zbtb18-211;Zbtb18-208;Zbtb18-203;Zbtb18-202;Zbtb18-204;Zbtb18-206;Zbtb18-210;Zbtb18-205;Zbtb18-212;Zbtb18-207;Zbtb18-201,Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,22,30928,ENSMUSG00000063659,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23346,cg09649660,-0.000035,0.0000118,-2.97513018,0.003158871,loss,ns,0.00000751,0.00002,0.376008435,0.707167813,pos,ns,-0.021864497,0.005854704,-3.734518066,0.000223777,neg,ns,3.650185055,0.000351236,0.000201343,1.74446672,0.082068815,pos,ns,0.720172254,Gm4321,Gm4321_Intergenic_upstream,3,117995491,117995540,117995539,117995540,50,+,TGCATCAGCTTCTTTCAAATTGCATTTCCTTCCTGTTAGGTCCATTAGCG,Distal Intergenic,3,117888573,117889014,442,2,Gm4321-201,-106477,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,4,100043260,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1415,cg27704491,0.00005,0.00000981,5.095549448,0.000000606,gain,yes,-0.00000626,0.0000167,-0.375990403,0.707181204,neg,ns,0.010241342,0.004880269,2.098520178,0.03666809,pos,ns,1.435711714,-0.00022858,0.000167832,-1.36195512,0.174200903,neg,ns,0.334693853,Rpl36-ps3,Rpl36-ps3_Intergenic_upstream,12,12725226,12725275,12725274,12725275,50,+,CCATTCAGATCCATCACCCTGAGATAAACTGTGAATATTGCCCTTTGTCG,Distal Intergenic,12,12912022,12912336,315,1,Rpl36-ps3-201,-186747,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,19,20,100043215,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5867,cg23870171,0.00000103,0.00000622,0.166071039,0.868209303,gain,ns,-0.00000397,0.0000106,-0.37598871,0.707182461,neg,ns,-0.004818699,0.003093569,-1.557650566,0.120336388,neg,ns,0.919603029,0.000157558,0.000106388,1.480978053,0.139628074,pos,ns,0.899820377,Snx13,Snx13_Exon,12,35082930,35082979,35082978,35082979,50,-,GAACACTCATTTCTTCCTCCAACATCACCTGGGGTTCCTAAGGTAAATCG,"Exon (Snx13-202/Snx13, exon 3 of 23)",12,35047186,35122988,75803,1,Snx13-203,35744,Snx13-203;Snx13-202;Snx13-201;Snx13-207;Snx13-206;Snx13-205,Snx13;Snx13;Snx13;Snx13;Snx13;Snx13,0;0;0;0;-3014;-3946,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,217463,ENSMUSG00000020590,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4293,cg10598051,-0.0000237,0.0000072,-3.286027447,0.001132641,loss,ns,0.0000046,0.0000122,0.37594827,0.707212496,pos,ns,-0.001721953,0.003582595,-0.480643902,0.631108629,neg,ns,0.199895882,-0.0000125,0.000123205,-0.101644466,0.919104596,neg,ns,0.623243061,Zfp800,Zfp800_Exon,6,28243376,28243425,28243376,28243377,50,-,CGTTTCCGACGAGTTTCATAAGTGCAAAGAGGACACTTGTAGAATTTAAC,"Exon (Zfp800-202/Zfp800, exon 5 of 6)",6,28239927,28261911,21985,2,Zfp800-202,18486,Zfp800-202;Zfp800-201;Zfp800-203;Zfp800-204;Zfp800-205,Zfp800;Zfp800;Zfp800;Zfp800;Zfp800,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,10,627049,ENSMUSG00000039841,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9903,cg09710669,-0.0000104,0.00000519,-2.001311941,0.046230132,loss,ns,0.00000332,0.00000882,0.375945469,0.707214576,pos,ns,0.002272362,0.002583821,0.879458228,0.379834083,pos,ns,0.420406068,-0.000194761,0.0000889,-2.191842684,0.02913438,neg,ns,0.049296878,Hnrnpa2b1,Hnrnpa2b1_fiveUTR,6,51469679,51469728,51469679,51469680,50,-,CGGACTCAGTCGCTTCAGCCCGATTTCCCGCAGCCGAGCGAGATGAGAGA,Promoter (<=1kb),6,51460932,51469894,8963,2,Hnrnpa2b1-201,166,Cbx3-202;Cbx3-201;Cbx3-207;Cbx3-203;Cbx3-206;Cbx3-204;Cbx3-205;Hnrnpa2b1-201;Hnrnpa2b1-207;Hnrnpa2b1-202;Hnrnpa2b1-209;Hnrnpa2b1-204;Hnrnpa2b1-210;Hnrnpa2b1-203;Hnrnpa2b1-205;Hnrnpa2b1-212;Hnrnpa2b1-206;Hnrnpa2b1-213,Cbx3;Cbx3;Cbx3;Cbx3;Cbx3;Cbx3;Cbx3;Hnrnpa2b1;Hnrnpa2b1;Hnrnpa2b1;Hnrnpa2b1;Hnrnpa2b1;Hnrnpa2b1;Hnrnpa2b1;Hnrnpa2b1;Hnrnpa2b1;Hnrnpa2b1;Hnrnpa2b1,-632;-802;-935;-938;-949;-967;-1018;0;0;0;0;0;0;0;-2978;-3442;-3012;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,3,53379,ENSMUSG00000004980,conserved gene and region,6,51469204,51471252,2049,*,2049,223,0.674475354,0.95734624,0.108833577,4.65E-177,CpGisland,TRUE,U1,Pr-A
15874,cg12617115,0.00000797,0.000013,0.611002369,0.541645752,gain,ns,0.00000833,0.0000221,0.375943236,0.707216235,pos,ns,-0.004309404,0.006488334,-0.664177211,0.507070593,neg,ns,0.294931575,0.000293224,0.000223133,1.314119045,0.189777695,pos,ns,0.355498093,Gm6411,Gm6411_Exon,13,83738859,83738908,83738907,83738908,50,-,TAAAGCTAGATAACCGAAAGTAAAAACTCCTTCAAGATCGCCGGGGAGCG,"Exon (C130071C03Rik-201/C130071C03Rik-201, exon 4 of 4)",13,83761132,83762335,1204,2,Gm6411-201,23476,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,36,623241,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
8011,cg10244777,0.0000163,0.00000288,5.653037445,3.58E-08,gain,yes,-0.00000184,0.0000049,-0.375891959,0.707254318,neg,ns,0.003753013,0.001435701,2.614062345,0.009384104,pos,ns,2.027607196,-0.0000891,0.0000494,-1.8053419,0.07199128,neg,ns,0.082892932,Pax2,Pax2_Intergenic_upstream,19,44684018,44684067,44684018,44684019,50,-,CGGCAAAAGTGTGGAGAAGATTTAAGCAAATGACTGTGTCAGCTTCTATT,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-72027,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
6845,cg11531782,-0.000016,0.00000875,-1.828769378,0.068394818,loss,ns,-0.00000559,0.0000149,-0.375880425,0.707262884,neg,ns,-0.004669284,0.00435437,-1.072321316,0.284409799,neg,ns,0.546055445,0.0000921,0.000149746,0.614884887,0.539081815,pos,ns,0.735755744,Etv1,Etv1_Promoter,12,38773065,38773114,38773113,38773114,50,-,GATTTGTAGCTTTCTTTGATGTGCTCACATGAAATGCCTGTAGTCAAACG,Promoter (6-7kb),12,38779380,38866249,86870,1,Etv1-203,-6315,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,10,14009,ENSMUSG00000004151,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19339,cg19065593,-0.0000313,0.0000053,-5.898939328,9.57E-09,loss,yes,0.00000339,0.00000901,0.375821581,0.707306588,pos,ns,-0.007359633,0.002639792,-2.787959699,0.0056317,neg,ns,2.2493605,-0.000033,0.0000908,-0.363209442,0.716695978,neg,ns,0.916188071,Cdh8,Cdh8_threeUTR,8,99030603,99030652,99030603,99030604,50,-,CGCCCAGTCTCTTAAAGCGGGGACCCCAGTCACTGAGGTAGTCAAAATTC,3' UTR,8,99024471,99416427,391957,2,Cdh8-207,385775,Cdh8-207;Cdh8-204;Cdh8-201;Cdh8-206;Cdh8-203,Cdh8;Cdh8;Cdh8;Cdh8;Cdh8,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,16,12564,ENSMUSG00000036510,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23174,cg21847954,-0.00000508,0.00000289,-1.758812903,0.079595892,loss,ns,-0.00000184,0.00000491,-0.37577919,0.707338073,neg,ns,-0.002685142,0.001438075,-1.867178057,0.0628204,neg,ns,1.201899301,0.0000741,0.0000495,1.499169239,0.134847384,pos,ns,0.950245961,Rnf220,Rnf220_Intron,4,117380197,117380246,117380245,117380246,50,-,TGTTTTCTTGCCAATTATCTGCAGGCGGATTTATCACCACAGTTGTTTCG,"Intron (Rnf220-201/Rnf220, intron 2 of 14)",4,117271463,117497052,225590,2,Rnf220-201,116806,Rnf220-201;Rnf220-202;Rnf220-207,Rnf220;Rnf220;Rnf220,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15617,cg08160490,-0.00000156,0.00000141,-1.111276814,0.267310352,loss,ns,-0.000000898,0.00000239,-0.375719183,0.707382644,neg,ns,-0.001096953,0.000700527,-1.565897643,0.118392772,neg,ns,0.926674811,0.0000131,0.0000241,0.544718079,0.58633906,pos,ns,0.959461491,Nfib,Nfib_threeUTR,4,82296388,82296437,82296436,82296437,50,+,AAGTCAGTTAAAATATATTGTCATAGAGACAGAACATCTATTTCCCAGCG,3' UTR,4,82290173,82505308,215136,2,Nfib-201,208871,Nfib-201;Nfib-203;Nfib-202;Nfib-205;Nfib-206;Nfib-204,Nfib;Nfib;Nfib;Nfib;Nfib;Nfib,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,11,66,18028,ENSMUSG00000008575,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23598,cg08793742,-0.0000689,0.0000103,-6.667543017,1.19E-10,loss,yes,-0.00000659,0.0000176,-0.375536487,0.707518346,neg,ns,0.002459636,0.005143143,0.478235976,0.63281934,pos,ns,0.198720257,-0.000682863,0.000176872,-3.860771199,0.000137585,neg,ns,0.474195261,P3h1,P3h1_threeUTR,4,119247498,119247547,119247546,119247547,50,-,AAACCCACATGGAGTGAAGGCTGTCACCAGGGGGCAGCGCTGTGCCATCG,3' UTR,4,119232915,119248972,16058,1,P3h1-204,14583,P3h1-204;P3h1-201;P3h1-212;P3h1-203;P3h1-210;P3h1-202;P3h1-205;P3h1-211;P3h1-209;P3h1-207,P3h1;P3h1;P3h1;P3h1;P3h1;P3h1;P3h1;P3h1;P3h1;P3h1,0;0;0;0;0;0;9556;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,1,56401,ENSMUSG00000028641,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12722,cg25295558,0.0000329,0.00000569,5.788299725,1.74E-08,gain,yes,-0.00000363,0.00000966,-0.3755336,0.70752049,neg,ns,0.010781535,0.002830124,3.809562418,0.000167855,pos,ns,3.775065404,-0.000193038,0.0000973,-1.983380249,0.048207026,neg,ns,0.071453889,Shox2,Shox2_Exon,3,66973899,66973948,66973899,66973900,50,+,CGCCTGAACCTGAAAGGACAAGGGCGTCACGTTGCAATGACTATCCTAGG,"Exon (Shox2-203/Shox2, exon 5 of 5)",3,66971727,66981318,9592,2,Shox2-203,7370,Shox2-203;Shox2-201;Shox2-202;Shox2-204;Shox2-205,Shox2;Shox2;Shox2;Shox2;Shox2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,7,20429,ENSMUSG00000027833,conserved gene and region,3,66973394,66973929,536,*,536,59,0.695895522,0.934184096,0.110074627,1.14E-47,CpGisland,TRUE,U3,Pr-B
14687,cg17986111,0.0000241,0.00000295,8.147152082,9.25E-15,gain,yes,-0.00000188,0.00000502,-0.375445279,0.707586097,neg,ns,0.002672233,0.001469477,1.818492813,0.069953723,pos,ns,1.155189168,0.00000804,0.0000505,0.159057947,0.873726794,pos,ns,0.041566374,Ctnna2,Ctnna2_Exon,6,77243836,77243885,77243836,77243837,50,+,CGTGGCTCTATCTGGATCACAATCACATCTGCTCCGTGCAGGGGGACGCC,"Exon (Lrrtm1-201/Lrrtm1, exon 2 of 3)",6,76881637,77979699,1098063,2,Ctnna2-204,735814,Ctnna2-204;Ctnna2-205;Ctnna2-202;Ctnna2-201;Lrrtm1-201;Lrrtm1-202;Lrrtm1-203;Lrrtm1-204,Ctnna2;Ctnna2;Ctnna2;Ctnna2;Lrrtm1;Lrrtm1;Lrrtm1;Lrrtm1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,16,24,12386,ENSMUSG00000063063,conserved gene and region,6,77243660,77243918,259,*,259,23,0.633204633,0.885930994,0.088803089,1.29E-16,CpGisland,TRUE,U13,Hc-P
9168,cg11054001,-0.0000237,0.0000134,-1.771625041,0.077439174,loss,ns,-0.00000851,0.0000227,-0.375378801,0.707635479,neg,ns,-0.014805799,0.006644785,-2.228183385,0.026585401,neg,ns,1.575356791,0.000223958,0.000228514,0.980064698,0.327818414,pos,ns,0.642361702,Gm13471,Gm13471_Intergenic_upstream,2,47334710,47334759,47334710,47334711,50,-,CGTTAATTTGCACTGAAAGGTTCCGGAGTGCAAAACTGCTGAGAAGATGA,Distal Intergenic,2,48140146,48140578,433,1,Gm13471-201,-805436,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,9,10,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4412,cg25149527,-0.00000625,0.00000741,-0.843446622,0.399629047,loss,ns,-0.00000472,0.0000126,-0.375292161,0.707699841,neg,ns,-0.002053003,0.003686736,-0.556862089,0.578023452,neg,ns,0.238054541,0.0000796,0.000126787,0.627479662,0.530806769,pos,ns,0.851511966,Gm18079,Gm18079_Intergenic_downstream,14,28827207,28827256,28827255,28827256,50,+,TGTTTTTTTCCTGTGGTGTGGTGTAACTTTCTTTGTCATCAATACATACG,Distal Intergenic,14,28724375,28725259,885,1,Gm18079-201,102832,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,100416373,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24657,cg21746387,0.000102872,0.000048,2.141160214,0.033040646,gain,ns,0.0000306,0.0000816,0.375243356,0.707736097,pos,ns,-0.027747765,0.023912439,-1.160390388,0.246782748,neg,ns,0.607685204,0.00095643,0.000822347,1.163049184,0.245704031,pos,ns,0.411826003,Stac3,Stac3_Intergenic_downstream,10,127510354,127510403,127510354,127510355,50,-,CGGCGGTTTAATTGGATTTATCAGCAGTTAATAGGAAATTAAGCAAAGGG,Downstream (1-2kb),10,127507225,127507992,768,1,Stac3-205,3178,Ndufa4l2-203;Ndufa4l2-202;Ndufa4l2-201;Stac3-202;Stac3-201;Stac3-204;Stac3-205,Ndufa4l2;Ndufa4l2;Ndufa4l2;Stac3;Stac3;Stac3;Stac3,-4564;-4564;0;0;0;5863;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,3,4,237611,ENSMUSG00000040287,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
3970,cg21852458,-0.0000114,0.00000318,-3.593339181,0.000379584,loss,ns,0.00000203,0.0000054,0.375171455,0.707789512,pos,ns,0.002212771,0.001582021,1.398698944,0.162902921,pos,ns,0.788071129,-0.000133602,0.0000544,-2.455669446,0.014610821,neg,ns,0.91994477,5730522E02Rik,5730522E02Rik_Intron,11,26072547,26072596,26072547,26072548,50,-,CGGGAGCCTGACATGTAATTTCTGATAAACCCATATAACTATGAACAGCA,"Intron (5730522E02Rik-202/5730522E02Rik, intron 1 of 5)",11,25617668,26210569,592902,2,5730522E02Rik-202,137973,5730522E02Rik-202;5730522E02Rik-201;5730522E02Rik-204,5730522E02Rik;5730522E02Rik;5730522E02Rik,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,90,70626,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15175,cg20397004,0.0000474,0.00000536,8.835079939,7.60E-17,gain,yes,-0.00000342,0.0000091,-0.375096362,0.7078453,neg,ns,0.007705507,0.002667397,2.888773465,0.004139868,pos,ns,2.383013543,-0.000052,0.0000917,-0.566864636,0.571216358,neg,ns,0.09835746,Polg,Polg_Intron,7,79506006,79506055,79506006,79506007,50,-,CGGTGAGGTCAAGTTCTTGATAATTTGATCACTTTTCACGGGCTCTGGCA,"Intron (Mir9-3hg-205/Mir9-3hg-205, intron 1 of 1)",7,79446231,79466362,20132,2,Polg-201,-39693,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,16,18975,ENSMUSG00000039176,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
22208,cg07153353,0.0000182,0.00000609,2.995110275,0.002964608,gain,ns,0.00000388,0.0000104,0.374962713,0.707944594,pos,ns,0.00090762,0.003032639,0.299283788,0.764924072,pos,ns,0.116381672,0.0000944,0.000104292,0.905198995,0.36606294,pos,ns,0.145498693,Galnt18,Galnt18_fiveUTR,7,111779505,111779554,111779505,111779506,50,-,CGCAAGTGGACACCAAAGTTTTGGTCTTCCTGGTGCACACCATTCTGGGC,Promoter (<=1kb),7,111471661,111779977,308317,2,Galnt18-201,423,Galnt18-201;Galnt18-202,Galnt18;Galnt18,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,3,233733,ENSMUSG00000038296,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
917,cg20718201,0.0000129,0.00000229,5.628158722,4.08E-08,gain,yes,0.00000146,0.0000039,0.37494536,0.707957487,pos,ns,0.001682736,0.001141267,1.474445537,0.141376469,pos,ns,0.84962287,0.00000559,0.0000392,0.142379224,0.886872963,pos,ns,0.048110934,Gdf6,Gdf6_Intron,4,9847287,9847336,9847335,9847336,50,-,GTTTCAACTCAGCGATCTAATTGAGGGTTCATGTCATAACACATCAAACG,"Intron (Gdf6-201/Gdf6, intron 1 of 1)",4,9844372,9862345,17974,1,Gdf6-201,2915,Gdf6-201,Gdf6,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,11,242316,ENSMUSG00000051279,conserved gene and region,4,9847226,9847435,210,*,210,17,0.580952381,0.959419511,0.080952381,1.02E-11,CpGisland,TRUE,NA,NRS
8994,cg26968753,-0.00000051,0.00000163,-0.311999981,0.755250281,loss,ns,0.00000104,0.00000277,0.374944681,0.707957991,pos,ns,0.001111109,0.00081289,1.366863674,0.172658462,pos,ns,0.762812133,-0.0000042,0.000028,-0.15019653,0.88070724,neg,ns,0.049542702,Trim8,Trim8_Exon,19,46502631,46502680,46502631,46502632,50,+,CGGGCCTGGAGAAGAACCTGAAGCTCACCAACATCGTGGAGAAGTTCAAT,Promoter (<=1kb),19,46501702,46516848,15147,1,Trim8-201,929,Trim8-201,Trim8,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,15,21,93679,ENSMUSG00000025034,conserved gene and region,19,46502503,46503142,640,*,640,53,0.6359375,0.821705426,0.0828125,6.38E-36,CpGisland,TRUE,U1,Pr-A
26007,cg12420624,-0.000000521,0.00000223,-0.234027987,0.81511773,loss,ns,0.00000142,0.00000378,0.374926578,0.707971441,pos,ns,-0.000235724,0.001108569,-0.212638171,0.831748951,neg,ns,0.080007738,-0.0000273,0.0000381,-0.716685179,0.474107962,neg,ns,0.946265323,Gm2574,Gm2574_Intergenic_downstream,3,142980201,142980250,142980201,142980202,50,-,CGATGCGACTATAATGTAAGATAACAATGGAAAAACAATTTCAGAGTAAG,Distal Intergenic,3,142962611,142963612,1002,1,Gm2574-201,17639,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,19,100040053,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17570,cg01028270,-0.0000545,0.0000133,-4.107876266,0.0000511,loss,ns,-0.00000845,0.0000225,-0.374913462,0.707981186,neg,ns,-0.022358984,0.00660345,-3.385955131,0.000800665,neg,ns,3.096549347,0.000567767,0.000227092,2.500163251,0.012929919,pos,ns,0.456152177,Dlg2,Dlg2_Intron,7,91089454,91089503,91089502,91089503,50,-,AAAGGCACAAACAATGACAGCCCAAAATAGCTATTTAGTCAGAACTGACG,"Intron (Dlg2-217/Dlg2, intron 6 of 27)",7,90477231,92449247,1972017,1,Dlg2-217,612223,Dlg2-217;Dlg2-204;Dlg2-209;Dlg2-201,Dlg2;Dlg2;Dlg2;Dlg2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,21,23859,ENSMUSG00000052572,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4227,cg12179737,-0.00000461,0.00000304,-1.516558231,0.130397296,loss,ns,-0.00000193,0.00000516,-0.374793527,0.708070297,neg,ns,-0.002778266,0.00151249,-1.836882319,0.067184491,neg,ns,1.172730966,0.0000492,0.000052,0.946132545,0.344817868,pos,ns,0.91224182,Trio,Trio_threeUTR,15,27744032,27744081,27744032,27744033,50,-,CGGGGCACTGGTCAGTGGCGGCTCGGAACACCAGAAACATGTTCTGCTGG,3' UTR,15,27730651,28025848,295198,2,Trio-201,281767,Trio-212;Trio-201;Trio-208;Trio-206;Trio-214;Trio-211;Trio-205,Trio;Trio;Trio;Trio;Trio;Trio;Trio,-1709;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,8,11,223435,ENSMUSG00000022263,conserved gene and region,15,27743899,27744056,158,*,158,12,0.64556962,0.736024845,0.075949367,4.47E-08,CpGisland,TRUE,U10,Tr-S
20631,cg23104616,-0.0000137,0.00000551,-2.485926622,0.013448035,loss,ns,0.0000035,0.00000935,0.374698102,0.7081412,pos,ns,0.009001965,0.002740139,3.285222167,0.001135773,pos,ns,2.944708301,-0.000409481,0.0000942,-4.345402616,0.0000189,neg,ns,0.858583524,Pou4f1,Pou4f1_Intergenic_downstream,14,104191474,104191523,104191522,104191523,50,+,TCAAATGTGACTTGCTTTCCTATTTCCCTCATGAATGGTCTCCGCTGGCG,Distal Intergenic,14,104463973,104465365,1393,2,Pou4f1-202,273842,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,31,18996,ENSMUSG00000048349,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5863,cg19170912,-0.0000556,0.0000106,-5.231211679,0.000000311,loss,yes,0.00000677,0.0000181,0.374572071,0.708234848,pos,ns,-0.009419519,0.005291977,-1.779962268,0.076061602,neg,ns,1.118834534,0.000152452,0.000181991,0.837692691,0.402848689,pos,ns,0.872889414,Stk3,Stk3_Intron,15,35065128,35065177,35065128,35065129,50,-,CGACAAGGAAATGGCCTACTAGCAGTGTATTACCTTTGTGGCAGTGCCAA,"Intron (Stk3-201/Stk3, intron 6 of 10)",15,34875496,35155806,280311,2,Stk3-201,90629,Stk3-201;Stk3-205;Stk3-202,Stk3;Stk3;Stk3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,56274,ENSMUSG00000022329,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15291,cg12961607,-0.0000502,0.00000909,-5.517254447,7.27E-08,loss,yes,0.00000579,0.0000155,0.374542932,0.7082565,pos,ns,0.013007997,0.004526562,2.873703496,0.004337133,pos,ns,2.362797236,-0.000389229,0.000155668,-2.500378642,0.012922218,neg,ns,0.728343053,Srsf7,Srsf7_threeUTR,17,80204796,80204845,80204844,80204845,50,+,ATTTTTCTAGTTGGGAATGTGGTCAATCTGGTGTTCCTCTTTCTAAACCG,3' UTR,17,80200080,80207305,7226,2,Srsf7-201,2460,Srsf7-201;Srsf7-202;Srsf7-203;Srsf7-205;Srsf7-206;Srsf7-207;Srsf7-208;Srsf7-204;Ttc39d-202,Srsf7;Srsf7;Srsf7;Srsf7;Srsf7;Srsf7;Srsf7;Srsf7;Ttc39d,0;0;0;0;0;0;0;0;-2615,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,7,8,225027,ENSMUSG00000024097,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4072,cg27441580,-0.00000405,0.00000113,-3.58348432,0.000393606,loss,ns,0.000000719,0.00000192,0.37453397,0.70826316,pos,ns,0.001177266,0.000562464,2.09305251,0.037157026,pos,ns,1.429959054,-0.0000456,0.0000193,-2.358334351,0.018977722,neg,ns,0.026438191,Crebrf,Crebrf_fiveUTR,17,26715658,26715707,26715658,26715659,50,-,CGATTTCCGGGAACCCGTCAGGAAGGACATAAACAAAACAAACCCGAGGC,Promoter (<=1kb),17,26715650,26776635,60986,1,Crebrf-201,8,Crebrf-201;Crebrf-204;Crebrf-203;Crebrf-205,Crebrf;Crebrf;Crebrf;Crebrf,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,5,77128,ENSMUSG00000048249,conserved gene and region,17,26715402,26716239,838,*,838,103,0.725536993,0.937635109,0.122911695,2.45E-88,CpGisland,TRUE,U1,Pr-A
12965,cg10410450,-0.0000103,0.00000704,-1.466330591,0.143571881,loss,ns,-0.00000447,0.000012,-0.374380052,0.708377537,neg,ns,-0.005168769,0.003501524,-1.476148279,0.140919118,neg,ns,0.851030084,-0.0000374,0.000120417,-0.310249694,0.756579556,neg,ns,0.857083509,Brinp1,Brinp1_Exon,4,68826838,68826887,68826838,68826839,50,-,CGTGCTTTGCAGAAGGACGGAACTCACAGAGTCCAGATTGTCATAGCTGT,"Exon (Brinp1-201/Brinp1, exon 5 of 8)",4,68761514,68954397,192884,2,Brinp1-201,127510,Brinp1-201;Brinp1-203;Brinp1-202,Brinp1;Brinp1;Brinp1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,7,56710,ENSMUSG00000028351,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
699,cg04016300,-0.00000196,0.00000141,-1.396060869,0.163695105,loss,ns,0.000000894,0.00000239,0.374212151,0.708502313,pos,ns,0.000275957,0.000700041,0.394201011,0.693703673,pos,ns,0.158826006,0.0000175,0.0000241,0.726360855,0.468165657,pos,ns,0.963867796,Pxk,Pxk_Exon,14,8146212,8146261,8146212,8146213,50,-,CGCTGTCTTGTGAAGCCTGTAAAAATGGCATGCCTACCATCTCCCGGCTC,"Exon (Pxk-201/Pxk, exon 12 of 18)",14,8098211,8165117,66907,1,Pxk-201,48001,Pxk-201;Pxk-202;Pxk-204;Pxk-205,Pxk;Pxk;Pxk;Pxk,0;0;47960;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,218699,ENSMUSG00000033885,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15629,cg27332307,-0.0000419,0.0000093,-4.500082868,0.00000962,loss,ns,-0.00000591,0.0000158,-0.374194832,0.708515184,neg,ns,-0.006472635,0.004628885,-1.39831412,0.163018298,neg,ns,0.787763646,0.000083,0.000159187,0.521101331,0.60266822,pos,ns,0.924933063,Nfib,Nfib_Exon,4,82350412,82350461,82350412,82350413,50,+,CGACTTCCAGCAGCTGGTGAACTTGGAGAGGGGTAAAAGTCTCCTGTAGG,"Exon (Nfib-201/Nfib, exon 6 of 12)",4,82290173,82505308,215136,2,Nfib-201,154847,Nfib-201;Nfib-203;Nfib-202;Nfib-205;Nfib-206;Nfib-204;Nfib-207;Nfib-209;Nfib-210,Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,14,66,18028,ENSMUSG00000008575,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6856,cg19756587,0.0000268,0.00000316,8.481779462,9.21E-16,gain,yes,-0.00000201,0.00000537,-0.374177117,0.708528349,neg,ns,0.00441623,0.001574266,2.805263014,0.005345217,pos,ns,2.272034621,-0.000110139,0.0000541,-2.03437402,0.042764789,neg,ns,0.039223448,Nr6a1,Nr6a1_Exon,2,38823507,38823556,38823555,38823556,50,-,ACAAAGATCCAACTGTAAAAAGTCTTACGTAACAGTTCAGGACTACTTCG,"Exon (Nr6a1os-201/Nr6a1os-201, exon 1 of 2)",2,38723370,38927688,204319,2,Nr6a1-202,104132,Nr6a1-202;Nr6a1-201;Nr6a1-208,Nr6a1;Nr6a1;Nr6a1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,12,14536,ENSMUSG00000063972,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
24087,cg27569602,0.00000708,0.0000115,0.617973001,0.537046859,gain,ns,-0.00000729,0.0000195,-0.374157426,0.708542984,neg,ns,-0.006831119,0.005705044,-1.197382423,0.23207231,neg,ns,0.634376674,0.000269738,0.000196196,1.374837768,0.170174632,pos,ns,0.786614646,Zic5,Zic5_Intergenic_downstream,14,122455517,122455566,122455517,122455518,50,-,CGAGCAGTGGTCAATTTTAACTCTATAGACTGGACAGAGAATGCTGGGAG,Distal Intergenic,14,122459193,122460021,829,2,Zic5-202,4504,Zic5-201;Zic5-202,Zic5;Zic5,0;4455,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,14,26,65100,ENSMUSG00000041703,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
17348,cg14403393,-0.00000233,0.0000012,-1.941378558,0.053118337,loss,ns,-0.000000763,0.00000204,-0.374107995,0.708579721,neg,ns,0.000153648,0.000597764,0.257037804,0.797320108,pos,ns,0.098367283,-0.0000296,0.0000206,-1.438657332,0.15125647,neg,ns,0.970360054,Agap1,Agap1_Intron,1,89798796,89798845,89798796,89798797,50,+,CGCTTGACAGTAATGATCTTATTACAGTACTGTGGACCTTGAAGAGATTT,"Intron (Agap1-201/Agap1, intron 13 of 17)",1,89454806,89897617,442812,1,Agap1-201,343990,Agap1-201;Agap1-204;Agap1-202;Agap1-205,Agap1;Agap1;Agap1;Agap1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,29,347722,ENSMUSG00000055013,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3116,cg06324764,-0.0000075,0.00000215,-3.490886646,0.000551287,loss,ns,0.00000137,0.00000365,0.374096072,0.708588582,pos,ns,-0.000220582,0.001069093,-0.20632675,0.836671127,neg,ns,0.077445218,0.0000957,0.0000368,2.603680658,0.009666718,pos,ns,0.940208352,Lrmda,Lrmda_Intron,14,22814240,22814289,22814288,22814289,50,-,GGATGCTGCCAATAAATCCTGTGTTACCATTAAAGAGGCCATTCATCACG,"Intron (Lrmda-201/Lrmda, intron 5 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,794528,Lrmda-201;Lrmda-204;Lrmda-206,Lrmda;Lrmda;Lrmda,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18795,cg23605887,-0.0000158,0.0000122,-1.294900742,0.196318059,loss,ns,0.00000774,0.0000207,0.37394235,0.708702833,pos,ns,-0.000162323,0.006061566,-0.026779096,0.978653157,neg,ns,0.009371199,-0.000321205,0.000208457,-1.540872638,0.124367905,neg,ns,0.753043188,Gk2,Gk2_Intron,5,97430156,97430205,97430204,97430205,50,+,TGTAATGATGTGATAATGTCTGACTCATTAACTCTGGCACACAGTTTACG,"Intron (4930467D21Rik-202/4930467D21Rik-202, intron 2 of 4)",5,97455142,97457021,1880,2,Gk2-201,26816,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,13,14626,ENSMUSG00000050553,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27162,cg08700089,0.00000016,0.00000248,0.064209824,0.948844539,gain,ns,0.00000158,0.00000422,0.373927189,0.708714101,pos,ns,-0.000943831,0.001236734,-0.763164458,0.44594569,neg,ns,0.350718029,0.0000294,0.0000425,0.690131741,0.490627681,pos,ns,0.955844881,Tnr,Tnr_Exon,1,159858193,159858242,159858241,159858242,50,+,CTTGCGAGTGGCTGGTATCAGCGACAGGTCCATTGAGCTGGAATGGGACG,"Exon (Tnr-202/Tnr, exon 5 of 23)",1,159523769,159931729,407961,1,Tnr-202,334424,Tnr-202;Tnr-201;Tnr-203,Tnr;Tnr;Tnr,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,13,21960,ENSMUSG00000015829,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25584,cg27267278,-0.000000352,0.00000209,-0.168781011,0.866078967,loss,ns,0.00000132,0.00000354,0.373924976,0.708715746,pos,ns,-0.000493311,0.001037814,-0.475337158,0.634881424,neg,ns,0.19730738,0.0000515,0.0000357,1.443211895,0.149970504,pos,ns,0.955364552,Ebf3,Ebf3_Intron,7,137262925,137262974,137262925,137262926,50,+,CGATAGGGAGTGACAGTTGATTTCAAAGCTTAATGCAAGACAAGAAAGAA,"Intron (Ebf3-204/Ebf3, intron 6 of 15)",7,137193673,137314445,120773,2,Ebf3-204,51471,Ebf3-204;Ebf3-201;Ebf3-202;Ebf3-203;Ebf3-208;Ebf3-205,Ebf3;Ebf3;Ebf3;Ebf3;Ebf3;Ebf3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,62,84,13593,ENSMUSG00000010476,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7761,cg13245548,-0.0000014,0.0000019,-0.736734087,0.461841251,loss,ns,0.00000121,0.00000323,0.373749173,0.708846416,pos,ns,-0.00130821,0.000945479,-1.383647818,0.167461808,neg,ns,0.776084225,0.0000525,0.0000325,1.615213024,0.107281841,pos,ns,0.971749318,Arhgap15,Arhgap15_Intron,2,44191074,44191123,44191074,44191075,50,-,CGACACATTTTGTGCAAACTCATTTGGGAAAGAATAGGAAATTTAAAATA,"Intron (Arhgap15-203/Arhgap15, intron 11 of 14)",2,43748824,44395953,647130,1,Arhgap15-203,442250,Arhgap15-203;Arhgap15-202;Arhgap15-201,Arhgap15;Arhgap15;Arhgap15,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,72,78,76117,ENSMUSG00000049744,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23084,cg18455006,0.0000558,0.0000117,4.754967325,0.00000305,gain,ns,-0.00000746,0.00002,-0.373663859,0.708909832,neg,ns,0.030718499,0.005845035,5.255485703,0.000000275,pos,ns,6.560244439,-0.000713436,0.00020101,-3.549253853,0.000446179,neg,ns,0.51452878,Rnf220,Rnf220_Intron,4,117281345,117281394,117281393,117281394,50,+,TTGGCGTGTGTCAAACGCACTTAGCCACTTTCCGGGCCTCCTCGATAACG,"Intron (Rnf220-201/Rnf220, intron 8 of 14)",4,117271463,117497052,225590,2,Rnf220-201,215658,Rnf220-201;Rnf220-203;Rnf220-212;Rnf220-202;Rnf220-205;Rnf220-209;Rnf220-213;Rnf220-210;Rnf220-206;Rnf220-208,Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,4,117281349,117281438,90,*,90,8,0.555555556,1.18226601,0.088888889,0.00000534,CpGisland,TRUE,NA,NRS
6617,cg16042238,-0.0000161,0.0000108,-1.492697426,0.136533411,loss,ns,-0.00000683,0.0000183,-0.373527923,0.709010879,neg,ns,-0.008619006,0.005358626,-1.608435798,0.108757676,neg,ns,0.96354008,0.000413619,0.000184283,2.244481742,0.025506575,pos,ns,0.870944671,Dennd1a,Dennd1a_Intron,2,37829941,37829990,37829989,37829990,50,+,TAGTGGCATTTGTGGTTTGAAGCCTTGTCAAGATCCCTGATTACTTCCCG,"Intron (Dennd1a-201/Dennd1a, intron 19 of 21)",2,37798991,38287375,488385,2,Dennd1a-201,457385,Dennd1a-201;Dennd1a-206;Dennd1a-207,Dennd1a;Dennd1a;Dennd1a,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,46,227801,ENSMUSG00000035392,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6111,cg24076820,-0.0000266,0.00000946,-2.807899455,0.005302747,loss,ns,0.000006,0.0000161,0.373454495,0.709065463,pos,ns,-0.003903951,0.004709633,-0.828928989,0.407782372,neg,ns,0.389571552,-0.000381359,0.000161964,-2.354591232,0.019166452,neg,ns,0.776477608,Tenm2,Tenm2_Exon,11,36078378,36078427,36078426,36078427,50,-,TCTCCAGGAATGATGTGGGTGCTATCCTTGCCTGCCAAGAGCTTGATACG,"Exon (Tenm2-202/Tenm2, exon 16 of 31)",11,36006656,37235882,1229227,2,Tenm2-202,1157455,Tenm2-202;Tenm2-208;Tenm2-201,Tenm2;Tenm2;Tenm2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,21,84,23964,ENSMUSG00000049336,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13188,cg19238264,-0.0000122,0.00000423,-2.88548801,0.004182163,loss,ns,-0.00000269,0.00000719,-0.373438715,0.709077194,neg,ns,-0.00160325,0.002106808,-0.760985522,0.447244172,neg,ns,0.34945531,0.000038,0.0000725,0.524278347,0.600459614,pos,ns,0.909147706,Tcf4,Tcf4_threeUTR,18,69683653,69683702,69683653,69683654,50,-,CGAAGTGATGACATTAGCCATTCCTTAGGGTAGGAGGAACAGATGGATCT,3' UTR,18,69344146,69684343,340198,1,Tcf4-201,339507,Tcf4-201;Tcf4-207;Tcf4-240;Tcf4-254;Tcf4-246;Tcf4-206;Tcf4-202;Tcf4-257;Tcf4-248;Tcf4-205;Tcf4-253;Tcf4-238;Tcf4-249;Tcf4-250;Tcf4-226;Tcf4-230;Tcf4-234;Tcf4-258;Tcf4-252;Tcf4-243;Tcf4-204;Tcf4-255;Tcf4-203;Tcf4-251;Tcf4-214;Tcf4-211,Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;1273,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,threeUTR,6,66,21413,ENSMUSG00000053477,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10390,cg22890537,-0.0000259,0.00000527,-4.917837381,0.00000142,loss,yes,-0.00000334,0.00000896,-0.373415275,0.709094619,neg,ns,0.002604826,0.002624311,0.992574882,0.321691282,pos,ns,0.492560709,0.0000542,0.0000902,0.60103471,0.548256076,pos,ns,0.874871804,Npas3,Npas3_Intron,12,53331876,53331925,53331876,53331877,50,-,CGATTAGATGATGACAGCTAGCTGGCTTTTAAAATTGATCAGGAAGTATT,"Intron (Npas3-204/Npas3, intron 1 of 10)",12,53248157,54069532,821376,1,Npas3-204,83719,Npas3-204;Npas3-201;Npas3-202;Npas3-203,Npas3;Npas3;Npas3;Npas3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,83,103,27386,ENSMUSG00000021010,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17341,cg14723306,0.000000648,0.00000105,0.61539197,0.538747399,gain,ns,0.000000668,0.00000179,0.373357148,0.709137831,pos,ns,0.000625404,0.000524124,1.193237485,0.233688788,pos,ns,0.631362124,-0.0000129,0.000018,-0.716502971,0.474220263,neg,ns,0.971558783,Ube2q1,Ube2q1_Exon,3,89779790,89779839,89779838,89779839,50,-,GCTGATGAAGGAGCTCAGGGATATATACCGATCACAGAGTTTCAAAGGCG,"Exon (Ube2q1-201/Ube2q1, exon 6 of 13)",3,89773616,89784000,10385,1,Ube2q1-201,6174,Ube2q1-201;Ube2q1-203;Ube2q1-202,Ube2q1;Ube2q1;Ube2q1,0;5930;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,6,70093,ENSMUSG00000042572,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25541,cg23827816,0.0000001,0.00000359,0.028007424,0.977674251,gain,ns,0.00000227,0.00000609,0.373337833,0.70915219,pos,ns,-0.000313945,0.001785008,-0.175878607,0.860504145,neg,ns,0.065247033,0.0000554,0.0000614,0.902031044,0.367740681,pos,ns,0.930413857,Ebf3,Ebf3_Intron,7,137204485,137204534,137204533,137204534,50,+,ATGGCTGGCTTAACCATGATGAATCGCTTGGCAGTTTAATTTACATGCCG,"Intron (Ebf3-204/Ebf3, intron 11 of 15)",7,137193673,137314445,120773,2,Ebf3-204,109911,Ebf3-204;Ebf3-201;Ebf3-202;Ebf3-203;Ebf3-208;Ebf3-205,Ebf3;Ebf3;Ebf3;Ebf3;Ebf3;Ebf3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,62,84,13593,ENSMUSG00000010476,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23329,cg13845195,-0.0000223,0.00000444,-5.018255227,0.00000088,loss,yes,0.00000281,0.00000753,0.373333356,0.709155519,pos,ns,-0.00252807,0.002207373,-1.14528472,0.252974633,neg,ns,0.596923026,-0.000044,0.0000759,-0.579814329,0.562460985,neg,ns,0.889330804,Slc6a9,Slc6a9_fiveUTR,4,117855912,117855961,117855960,117855961,50,-,AGAACCTCAAACGGGGCAACTGGGGCAACCAGATCGAGTTTGTACTGACG,5' UTR,4,117834506,117869296,34791,1,Slc6a9-202,21406,Slc6a9-202;Slc6a9-201;Slc6a9-207;Slc6a9-210;Slc6a9-206;Slc6a9-204;Slc6a9-211;Slc6a9-209;Slc6a9-203;Slc6a9-205,Slc6a9;Slc6a9;Slc6a9;Slc6a9;Slc6a9;Slc6a9;Slc6a9;Slc6a9;Slc6a9;Slc6a9,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,8,14664,ENSMUSG00000028542,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24160,cg23825276,-0.0000241,0.00000394,-6.1170652,2.87E-09,loss,yes,-0.0000025,0.00000669,-0.373327417,0.709159934,neg,ns,-0.004277481,0.001960136,-2.1822369,0.029842471,neg,ns,1.525165215,0.0000726,0.0000674,1.076484877,0.282547493,pos,ns,0.923385677,Trit1,Trit1_Exon,4,123049155,123049204,123049203,123049204,50,-,GGACTATCAACATGGTATCTTCCAATCAATTGGCTTCAAGGAATTTCACG,"Exon (Trit1-201/Trit1, exon 7 of 11)",4,123016597,123054949,38353,1,Trit1-201,32558,Trit1-201;Trit1-203;Trit1-202,Trit1;Trit1;Trit1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,2,66966,ENSMUSG00000028653,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17569,cg04704265,0.0000669,0.0000175,3.812810024,0.000165762,gain,ns,-0.0000111,0.0000298,-0.373263163,0.709207702,neg,ns,0.043336458,0.008734374,4.96159844,0.00000115,pos,ns,5.937453859,-0.00147257,0.000300374,-4.902448872,0.00000153,neg,yes,0.413593789,Cep128,Cep128_Intron,12,91050748,91050797,91050748,91050749,50,-,CGGTTTCAGTTTGAATGGGTTCCCAGGAAGTGTCAAGTCTGAACAAATCC,"Intron (5430427M07Rik-202/5430427M07Rik-202, intron 2 of 3)",12,90998492,91266933,268442,2,Cep128-211,216136,Cep128-211;Cep128-210;Cep128-203;Cep128-201;Cep128-207,Cep128;Cep128;Cep128;Cep128;Cep128,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,75216,ENSMUSG00000061533,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22148,cg05061886,-0.00000901,0.0000025,-3.607447945,0.000360325,loss,ns,-0.00000158,0.00000424,-0.373253378,0.709214977,neg,ns,-0.001666729,0.001242533,-1.34139583,0.180773833,neg,ns,0.742864434,0.00000119,0.0000427,0.027898352,0.977761174,pos,ns,0.963517438,Mn1,Mn1_Exon,5,111421839,111421888,111421839,111421840,50,-,CGCCCTGGGAGAAGGCCAAACCCCAGAACCCCAACAGCAAAGAAGGTATA,"Exon (Mn1-201/Mn1, exon 1 of 2)",5,111417442,111457033,39592,1,Mn1-201,4397,Mn1-202;Mn1-201,Mn1;Mn1,4477;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,12,433938,ENSMUSG00000070576,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27516,cg19852475,0.00000866,0.0000091,0.951453707,0.342115328,gain,ns,-0.00000577,0.0000155,-0.373119871,0.709314234,neg,ns,-0.004581258,0.00452993,-1.011330972,0.31264675,neg,ns,0.504946082,0.0000963,0.000155784,0.618457119,0.536728195,pos,ns,0.824878185,Pbx1,Pbx1_Intergenic_upstream,1,168908744,168908793,168908744,168908745,50,+,CGCTGCAGCTGCGAAGAGAGAGGTTCTGAACTCTGGCATTCTACAGTAGG,Distal Intergenic,1,168119364,168432270,312907,2,Pbx1-208,-476474,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,17,84,18514,ENSMUSG00000052534,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15043,cg06071744,-0.000000224,0.00000155,-0.144713646,0.885031002,loss,ns,0.000000981,0.00000263,0.372889932,0.709485196,pos,ns,0.000479749,0.000770754,0.622440783,0.534109636,pos,ns,0.272369587,-0.000048,0.0000265,-1.811996094,0.070954278,neg,ns,0.95434852,Gm6317,Gm6317_Intergenic_upstream,13,78602308,78602357,78602308,78602309,50,+,CGTATCATTAAAAACCAGTGATCCTTCACTGATGACATAATTTGACTGGC,Distal Intergenic,13,78372987,78379128,6142,2,Gm6317-201,-223180,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,11,622365,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24546,cg11811464,-0.000000991,0.000000589,-1.683569737,0.093271515,loss,ns,0.000000373,0.000001,0.372859026,0.709508176,pos,ns,0.0000552,0.000293044,0.188259574,0.85079635,pos,ns,0.070174382,-0.0000126,0.0000101,-1.252413446,0.211363252,neg,ns,0.017484228,Trpm7,Trpm7_fiveUTR,2,126876146,126876195,126876146,126876147,50,-,CGAGTCTTTCATAATTGTGCGACCAACTCCTCCGGGTGACTGGCCACAGG,Promoter (<=1kb),2,126830841,126876186,45346,2,Trpm7-206,0,Trpm7-202;Trpm7-201;Trpm7-206,Trpm7;Trpm7;Trpm7,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,4,58800,ENSMUSG00000027365,conserved gene and region,2,126875869,126876552,684,*,684,79,0.665204678,1.05259467,0.115497076,1.81E-65,CpGisland,TRUE,U1,Pr-A
1053,cg03798041,-0.000000772,0.00000276,-0.279532921,0.780022289,loss,ns,-0.00000175,0.00000469,-0.372846168,0.709517736,neg,ns,-0.000897851,0.001374235,-0.653345876,0.514017605,neg,ns,0.289022006,-0.0000209,0.0000473,-0.441796857,0.658944238,neg,ns,0.951831195,Dpy19l4,Dpy19l4_threeUTR,4,11281015,11281064,11281063,11281064,50,+,GGTGTACAGTTCTTAATCGAAGCCACTTGAAAAGTGTCATCCAAAGTTCG,3' UTR,4,11261315,11303361,42047,2,Dpy19l4-203,22297,Dpy19l4-203;Dpy19l4-201;Dpy19l4-202;Dpy19l4-204,Dpy19l4;Dpy19l4;Dpy19l4;Dpy19l4,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,381510,ENSMUSG00000045205,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26907,cg18539981,0.00000112,0.00000412,0.271063315,0.786522738,gain,ns,-0.00000261,0.00000701,-0.372715537,0.70961487,neg,ns,-0.003681203,0.00205272,-1.793329089,0.073894953,neg,ns,1.131385226,0.0000917,0.0000706,1.299448149,0.194755699,pos,ns,0.916509706,Cacna1e,Cacna1e_Exon,1,154561732,154561781,154561732,154561733,50,-,CGGAAAGCACTCCCAGGACTAGGTTGAGAACAAAGAAGGATCCAATGATG,"Exon (Cacna1e-203/Cacna1e, exon 7 of 47)",1,154390731,154726356,335626,2,Cacna1e-203,164575,Cacna1e-203;Cacna1e-201;Cacna1e-207;Cacna1e-206;Cacna1e-209,Cacna1e;Cacna1e;Cacna1e;Cacna1e;Cacna1e,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,19,12290,ENSMUSG00000004110,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15323,cg25682789,-0.00000186,0.00000649,-0.286759286,0.774488203,loss,ns,0.00000411,0.000011,0.372654214,0.70966047,pos,ns,-0.000147533,0.003232043,-0.045647017,0.963620985,neg,ns,0.016093751,-0.000154928,0.00011115,-1.393872249,0.164354535,neg,ns,0.848534122,Gm46388,Gm46388_Intergenic_upstream,13,80347630,80347679,80347678,80347679,50,+,ACATTCAAACAAGTGTGCTCACTCATCCTGAACACACGTTCATCTGCACG,Distal Intergenic,13,80493009,80493484,476,1,Gm46388-201,-145330,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,11,108168047,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2793,cg18096853,0.0000179,0.0000192,0.930413688,0.352880901,gain,ns,-0.0000122,0.0000326,-0.372634879,0.709674847,neg,ns,0.000275452,0.009557866,0.028819377,0.977027191,pos,ns,0.01009335,-0.000250583,0.000328694,-0.762358817,0.446425539,neg,ns,0.548395243,Klhl14,Klhl14_Intergenic_upstream,18,21729420,21729469,21729468,21729469,50,+,CCAGCAAAGTTAACTAGTACAAACAAGTTCATTCATCTGATTAAGAACCG,Distal Intergenic,18,21550379,21654718,104340,2,Klhl14-202,-74702,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,38,225266,ENSMUSG00000042514,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26084,cg07272882,0.000000483,0.00000403,0.119800052,0.904719142,gain,ns,0.00000255,0.00000685,0.37261678,0.709688306,pos,ns,0.003369188,0.002006157,1.679424018,0.094076954,pos,ns,1.026516754,-0.000127501,0.000069,-1.848065938,0.065545158,neg,ns,0.932349052,Gm2505,Gm2505_Intron,3,143782575,143782624,143782575,143782576,50,-,CGGAAGTGAAACAACTTTATGGTAATCATATGCAAAATGTTTCTCAAGTT,"Intron (Gm42705-201/Gm42705-201, intron 1 of 5)",3,143872995,143873819,825,1,Gm2505-201,-90420,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,37,100039938,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6681,cg27171735,-0.00000019,0.00000228,-0.083248589,0.933707608,loss,ns,0.00000145,0.00000388,0.372556415,0.709733195,pos,ns,0.001218087,0.001136882,1.071428541,0.28481021,pos,ns,0.545444446,-0.000037,0.0000391,-0.946831506,0.344462097,neg,ns,0.933484906,Stx18,Stx18_Intergenic_upstream,5,38003088,38003137,38003136,38003137,50,-,GAAACACTTATTTTCGGAATTTTATAGCTCAGCCACAAAAATTCACTCCG,Distal Intergenic,5,38038742,38137765,99024,1,Stx18-203,-35654,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,71116,ENSMUSG00000029125,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17174,cg00310215,0.000132456,0.000015,8.847900248,6.93E-17,gain,yes,-0.00000947,0.0000254,-0.372266316,0.709948935,neg,ns,0.0187516,0.00745087,2.516699428,0.012350451,pos,ns,1.908317166,-0.00066519,0.000256235,-2.596016585,0.009880219,neg,ns,0.059935656,Sall1,Sall1_Intron,8,89042618,89042667,89042618,89042619,50,-,CGATTAATCATAGAGGGGCTCTTTGAAAGGCGATTGGCACCGGGCCAGCG,"Intron (Sall1-201/Sall1, intron 1 of 3)",8,89027235,89044162,16928,2,Sall1-201,1495,Sall1-201,Sall1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,15,58198,ENSMUSG00000031665,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
12543,cg24111804,0.0000024,0.00000407,0.589733196,0.555799109,gain,ns,-0.00000257,0.00000691,-0.372236699,0.709970961,neg,ns,0.002063289,0.002025314,1.01874993,0.309116098,pos,ns,0.509878378,-0.000156539,0.0000697,-2.247494304,0.02531139,neg,ns,0.891975928,Prpf39,Prpf39_threeUTR,12,65043830,65043879,65043830,65043831,50,-,CGTGGGGATCAGAACATTGCCATGTTCTATCCAACCTCCACCCAAATGGT,3' UTR,12,65036333,65063386,27054,1,Prpf39-201,7497,Prpf39-201;Prpf39-205;Prpf39-202;Prpf39-207;Prpf39-210;Prpf39-209;Prpf39-203;Prpf39-208;Prpf39-206,Prpf39;Prpf39;Prpf39;Prpf39;Prpf39;Prpf39;Prpf39;Prpf39;Prpf39,0;0;0;0;0;0;0;-113;-4437,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,5,7,328110,ENSMUSG00000035597,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25118,cg01644993,-0.0000121,0.00000526,-2.30690357,0.021719102,loss,ns,0.00000333,0.00000894,0.372227492,0.709977809,pos,ns,0.000781796,0.002619717,0.298427537,0.765576806,pos,ns,0.116011232,-0.0000623,0.0000901,-0.691487638,0.489776669,neg,ns,0.594462472,Ahdc1,Ahdc1_Intron,4,133021527,133021576,133021575,133021576,50,+,AGTCAGTTCCGACAGTGAAGGTTACTTTACTAGATGCATGATTTTAAACG,"Intron (Ahdc1-210/Ahdc1, intron 2 of 3)",4,133011260,133060820,49561,1,Ahdc1-210,10267,Ahdc1-210;Ahdc1-203;Ahdc1-204;Ahdc1-205;Ahdc1-207;Ahdc1-211;Ahdc1-209;Ahdc1-206;Ahdc1-201,Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,35,49,230793,ENSMUSG00000037692,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6125,cg02102278,0.0000548,0.00000852,6.429334482,4.84E-10,gain,yes,-0.00000538,0.0000145,-0.372047135,0.710111949,neg,ns,0.0113884,0.004238914,2.686631355,0.007606893,pos,ns,2.118792682,-0.000378088,0.000145776,-2.593624175,0.009947724,neg,ns,0.171972047,Tenm2,Tenm2_Exon,11,36106788,36106837,36106788,36106789,50,+,CGGTCTGGCAGACACACTGCCAGCTGTTCTGACCCAGTGTGCATCTCCCG,"Exon (Tenm2-202/Tenm2, exon 15 of 31)",11,36006656,37235882,1229227,2,Tenm2-202,1129045,Tenm2-202;Tenm2-208;Tenm2-201,Tenm2;Tenm2;Tenm2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,21,84,23964,ENSMUSG00000049336,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7604,cg08830547,-0.000105172,0.0000662,-1.588162684,0.113268929,loss,ns,-0.0000418,0.000112503,-0.371873991,0.710240734,neg,ns,0.083288279,0.032959684,2.526974433,0.012002143,pos,ns,1.920741195,-0.002818361,0.001133481,-2.486465755,0.013428083,neg,ns,0.715281417,Zbtb20,Zbtb20_Exon,16,43410607,43410656,43410607,43410608,50,-,CGTCTTGATCAGAATAATTAGAGACTGCGTGTTTCATGTCAAAAGTAGCA,"Exon (Gm15713-201/Gm15713-201, exon 5 of 5)",16,42875881,43463175,587295,1,Zbtb20-209,534726,Zbtb20-209;Zbtb20-211;Zbtb20-217;Zbtb20-218;Zbtb20-204;Zbtb20-215;Zbtb20-201;Zbtb20-203;Zbtb20-214;Zbtb20-213;Zbtb20-219;Zbtb20-216,Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,17,98,56490,ENSMUSG00000022708,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
364,cg02529685,-0.00000385,0.00000244,-1.577432719,0.115715861,loss,ns,-0.00000154,0.00000414,-0.371863719,0.710248375,neg,ns,0.000694706,0.001213464,0.572498534,0.567399239,pos,ns,0.246111251,-0.0000844,0.0000417,-2.021944765,0.044040744,neg,ns,0.942595378,Zfhx4,Zfhx4_Exon,3,5242361,5242410,5242409,5242410,50,-,TTAGCAGGAGTTGGTCCTGTGTTGCACAGTTTCCGTGTCTATGATCTCCG,"Exon (Zfhx4-203/Zfhx4, exon 2 of 11)",3,5218526,5413165,194640,1,Zfhx4-203,23835,Zfhx4-203;Zfhx4-202;Zfhx4-201;Zfhx4-204;Zfhx4-205,Zfhx4;Zfhx4;Zfhx4;Zfhx4;Zfhx4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,23,77,80892,ENSMUSG00000025255,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3794,cg17378114,-0.000000953,0.00000201,-0.474471513,0.635497757,loss,ns,0.00000127,0.00000341,0.371739551,0.710340736,pos,ns,0.001502632,0.000999637,1.503178054,0.133811151,pos,ns,0.873507693,-0.000025,0.0000344,-0.727264911,0.467612557,neg,ns,0.057782939,Zmiz1,Zmiz1_fiveUTR,14,25459187,25459236,25459235,25459236,50,+,TGGAAATAGAATAGCCAATGTAATCTGACACTTCAACTTGCTCGGCTCCG,Promoter (<=1kb),14,25459224,25666743,207520,1,Zmiz1-208,0,Zmiz1-206;Zmiz1-208;Zmiz1-201;Zmiz1-202,Zmiz1;Zmiz1;Zmiz1;Zmiz1,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,15,328365,ENSMUSG00000007817,conserved gene but different region,14,25459229,25459638,410,*,410,55,0.704878049,1.080084299,0.134146342,7.65E-50,CpGisland,TRUE,U1,Pr-A
11483,cg12521448,0.0000437,0.000013,3.359069815,0.000879703,gain,ns,0.00000822,0.0000221,0.371675615,0.710388296,pos,ns,0.013610122,0.006475504,2.101785806,0.036378702,pos,ns,1.4391528,-0.000119416,0.000222692,-0.536237199,0.592179196,neg,ns,0.730274755,Gm18080,Gm18080_Intergenic_downstream,14,58475989,58476038,58475989,58475990,50,-,CGGTGTCATTATCAGATTAATATTTGAGTTCCAATTTAAGCTAGAATTAT,Distal Intergenic,14,58240221,58240834,614,1,Gm18080-201,235817,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,100416374,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4245,cg02090534,0.0000146,0.00000385,3.802349981,0.000172593,gain,ns,-0.00000243,0.00000654,-0.371655532,0.710403236,neg,ns,0.001492636,0.00191741,0.778464575,0.43688896,pos,ns,0.35962893,0.00002,0.0000659,0.303542183,0.761680324,pos,ns,0.92060608,Erc2,Erc2_Exon,14,27876567,27876616,27876615,27876616,50,-,TCTATCGTGTTCCTCCCCAGGAATTGCACCGAAGAAGCCAACTTCAGCCG,"Exon (Erc2-205/Erc2, exon 5 of 20)",14,27622428,28478535,856108,1,Erc2-205,254139,Erc2-205;Erc2-201;Erc2-203;Erc2-210;Erc2-211;Erc2-212;Erc2-202;Erc2-213;Erc2-208;Erc2-207,Erc2;Erc2;Erc2;Erc2;Erc2;Erc2;Erc2;Erc2;Erc2;Erc2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,17,238988,ENSMUSG00000040640,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2396,cg17153727,-0.000000407,0.00000929,-0.043784765,0.96510416,loss,ns,0.00000587,0.0000158,0.371572554,0.710464963,pos,ns,-0.009053866,0.004625446,-1.957403815,0.051197052,neg,ns,1.290755049,0.000351589,0.000159069,2.210299173,0.027814561,pos,ns,0.145148636,Tfap2b,Tfap2b_threeUTR,1,19235371,19235420,19235371,19235372,50,-,CGCATGGTTTATGAGCTTCTTCAAAGAGGACTTGGGCTTCCTACACAATC,3' UTR,1,19208914,19238576,29663,1,Tfap2b-201,26457,Tfap2b-201;Tfap2b-204;Tfap2b-202,Tfap2b;Tfap2b;Tfap2b,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,40,21419,ENSMUSG00000025927,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
20257,cg19884962,0.0000639,0.00000844,7.566191888,4.41E-13,gain,yes,-0.00000533,0.0000143,-0.371547358,0.710483706,neg,ns,0.009633921,0.004201236,2.293116002,0.022510491,pos,ns,1.647615033,-0.000299309,0.00014448,-2.071627227,0.039127048,neg,ns,0.120567679,Hoxc5,Hoxc5_Intron,15,102972084,102972133,102972132,102972133,50,+,ATCCAGGTGACCACAATAAGTCAAGGTCATAAAACAGTAATGTCAGGACG,"Intron (Hoxc5-202/Hoxc5, intron 1 of 1)",15,102967443,103015676,48234,1,Hoxc5-202,4641,Hoxc10-201;Hoxc5-202;Hoxc9-202;Hoxc9-201,Hoxc10;Hoxc5;Hoxc9;Hoxc9,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,46,134,15424,ENSMUSG00000022485,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
9307,cg19867798,0.0000397,0.000012,3.294947153,0.001098482,gain,ns,0.0000076,0.0000205,0.371481942,0.710532371,pos,ns,0.00917287,0.005992807,1.530646771,0.126876502,pos,ns,0.896618805,0.0000728,0.000206092,0.35304915,0.724291537,pos,ns,0.595687755,Nr4a3,Nr4a3_Exon,4,48055948,48055997,48055996,48055997,50,-,GCAAAATATGTTTGCCTGGCAAATAAAAACTGCCCAGTAGACAAGAGACG,"Exon (Nr4a3-201/Nr4a3, exon 4 of 8)",4,48045153,48086445,41293,1,Nr4a3-201,10795,Nr4a3-201;Nr4a3-203;Nr4a3-202,Nr4a3;Nr4a3;Nr4a3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,20,18124,ENSMUSG00000028341,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19944,cg13694139,0.00000164,0.000000495,3.308673456,0.001047781,gain,ns,-0.000000312,0.00000084,-0.371479078,0.710534501,neg,ns,-0.000592909,0.000246212,-2.408127775,0.016618137,neg,ns,1.779417666,0.0000203,0.00000847,2.397311698,0.017107451,pos,ns,0.986476893,Clpb,Clpb_Intron,7,101714027,101714076,101714075,101714076,50,-,AGTTTCCGATGATTATCTCTCACTGAGACATTTTTTACAGATGACGGTCG,"Intron (Clpb-205/Clpb, intron 4 of 5)",7,101663633,101722922,59290,1,Clpb-205,50394,Clpb-205;Clpb-201;Clpb-202;Clpb-211;Clpb-208;Clpb-207;Clpb-210,Clpb;Clpb;Clpb;Clpb;Clpb;Clpb;Clpb,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,21,21,20480,ENSMUSG00000001829,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12174,cg12732278,-0.00000389,0.000000955,-4.078024356,0.0000578,loss,ns,0.000000602,0.00000162,0.37139731,0.710595332,pos,ns,0.001117122,0.000475167,2.35100997,0.019348563,pos,ns,1.713351294,-0.000018,0.0000163,-1.102396167,0.271144584,neg,ns,0.971024232,Map2k5,Map2k5_Exon,9,63216982,63217031,63216982,63216983,50,-,CGATGCCTCACCTCATCAACAATGCACTGCAGAAGCTGGAGAGGCTGCAA,"Exon (Map2k5-201/Map2k5, exon 19 of 22)",9,63163768,63377902,214135,2,Map2k5-201,160871,Map2k5-201;Map2k5-202,Map2k5;Map2k5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,37,23938,ENSMUSG00000058444,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17258,cg20118675,0.0000155,0.0000082,1.892046247,0.059416543,gain,ns,-0.00000517,0.0000139,-0.371396727,0.710595766,neg,ns,-0.010852875,0.004080834,-2.659474884,0.00823299,neg,ns,2.08444239,0.000160483,0.00014034,1.143532014,0.253700056,pos,ns,0.677476487,Nog,Nog_Intergenic_upstream,11,89318406,89318455,89318406,89318407,50,+,CGCCAAGATCTCCAAGTTGCCCTGTGTTTATGTCATTGAGACGAGGACAA,Distal Intergenic,11,89300638,89302332,1695,2,Nog-201,-16074,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,36,18121,ENSMUSG00000048616,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12516,cg18116969,0.0000387,0.00000733,5.280727459,0.000000243,gain,yes,-0.00000462,0.0000124,-0.371386027,0.710603726,neg,ns,0.005852833,0.003647208,1.60474333,0.109568528,pos,ns,0.960314171,-0.000104058,0.000125427,-0.829624965,0.407389242,neg,ns,0.776427459,Gm13578,Gm13578_Intergenic_downstream,2,64824147,64824196,64824195,64824196,50,+,TTAATTCAACTCCTGCTGTTAAATTAACCAGCGTTCCAGCCGAGTTAACG,Distal Intergenic,2,64867999,64868588,590,2,Gm13578-201,44392,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,10,667291,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11296,cg02192529,-0.000000324,0.00000218,-0.149141134,0.881539244,loss,ns,0.00000137,0.0000037,0.371383554,0.710605566,pos,ns,0.001955359,0.001082722,1.805966519,0.07189341,pos,ns,1.143310915,-0.00000895,0.0000372,-0.240347149,0.810220009,neg,ns,0.968945492,Rbmx,Rbmx_threeUTR,X,57386115,57386164,57386115,57386116,50,-,CGGAAAAACTAGTTTGCTTTGCTTACCATCTTTGCTGTTTCACAGGCATT,3' UTR,20,57383530,57392981,9452,2,Rbmx-205,6817,Rbmx-205;Rbmx-201;Rbmx-203;Rbmx-202;Rbmx-206;Rbmx-204,Rbmx;Rbmx;Rbmx;Rbmx;Rbmx;Rbmx,0;0;0;0;0;6633,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,6,19655,ENSMUSG00000031134,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22073,cg01326050,-0.0000205,0.00000494,-4.150570661,0.0000429,loss,ns,0.00000311,0.00000839,0.371362799,0.710621007,pos,ns,-0.002491115,0.002457116,-1.013837069,0.311451135,neg,ns,0.506610082,0.000095,0.0000845,1.124530801,0.261657883,pos,ns,0.877360694,Pth1r,Pth1r_Intron,9,110737094,110737143,110737142,110737143,50,-,GAGTGTCCCCAGAAGGCCCACAACAGGAATCTGAGGGAGGCTACTTGACG,"Intron (Pth1r-204/Pth1r, intron 3 of 15)",9,110722085,110747122,25038,2,Pth1r-204,9979,Myl3-205;Pth1r-204;Pth1r-202;Pth1r-201;Pth1r-206;Pth1r-203;Pth1r-205,Myl3;Pth1r;Pth1r;Pth1r;Pth1r;Pth1r;Pth1r,-4718;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,19228,ENSMUSG00000032492,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22266,cg16277636,0.00000683,0.00000221,3.092903667,0.002162435,gain,ns,-0.00000139,0.00000375,-0.371353037,0.71062827,neg,ns,-0.001630449,0.001099809,-1.482483951,0.13922741,neg,ns,0.856275257,0.0000329,0.0000378,0.870750066,0.384564423,pos,ns,0.959034851,Srgap3,Srgap3_Exon,6,112754553,112754602,112754553,112754554,50,+,CGGCTCCCCAGCAAGTACCTTAATGAATGCTTCCATACTGCCGTTAAAGA,"Exon (Srgap3-202/Srgap3, exon 12 of 22)",6,112717971,112947266,229296,2,Srgap3-202,192664,Srgap3-202;Srgap3-203;Srgap3-204,Srgap3;Srgap3;Srgap3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,3,259302,ENSMUSG00000030257,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23995,cg13526892,-0.000000981,0.0000209,-0.04684548,0.962666545,loss,ns,-0.0000132,0.0000356,-0.371350206,0.710630376,neg,ns,0.007435391,0.010424773,0.713242487,0.47623229,pos,ns,0.322181161,-0.000622591,0.000358507,-1.736620589,0.083447559,neg,ns,0.645110954,Atxn2,Atxn2_Exon,5,121781434,121781483,121781434,121781435,50,-,CGGCCGCCCTCCAGGCCCCCCTCGCGGCCATCCAGACCCCCGTCTCACCC,"Exon (Atxn2-201/Atxn2, exon 10 of 25)",5,121711609,121814950,103342,1,Atxn2-201,69825,Atxn2-201;Atxn2-220;Atxn2-209;Atxn2-208;Atxn2-219;Atxn2-214;Atxn2-202,Atxn2;Atxn2;Atxn2;Atxn2;Atxn2;Atxn2;Atxn2,0;0;0;0;0;0;-3591,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,16,20239,ENSMUSG00000042605,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7500,cg13940770,0.000059,0.0000069,8.55002,5.72E-16,gain,yes,-0.00000435,0.0000117,-0.371071611,0.710837652,neg,ns,0.011022051,0.003432813,3.210792356,0.001462575,pos,ns,2.834881731,-0.000154535,0.000118054,-1.309016605,0.191498217,neg,ns,0.103792063,Ppp2r2b,Ppp2r2b_fiveUTR,18,42898766,42898815,42898766,42898767,50,+,CGCGCAGGAAACTGTTGTTGATTTTGCGGGTATCAATGTCCTCCTCCATT,Promoter (<=1kb),18,42758468,42898815,140348,2,Ppp2r2b-206,0,Ppp2r2b-204;Ppp2r2b-202;Ppp2r2b-201;Ppp2r2b-203;Ppp2r2b-208;Ppp2r2b-207;Ppp2r2b-205;Ppp2r2b-206,Ppp2r2b;Ppp2r2b;Ppp2r2b;Ppp2r2b;Ppp2r2b;Ppp2r2b;Ppp2r2b;Ppp2r2b,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,9,15,72930,ENSMUSG00000024500,conserved gene and region,18,42898666,42898793,128,*,128,11,0.6015625,0.951351351,0.0859375,5.43E-08,CpGisland,TRUE,U3,Pr-B
15134,cg03327587,0.00000881,0.00000429,2.054850272,0.040731258,gain,ns,-0.0000027,0.00000729,-0.37098596,0.710901382,neg,ns,-0.00327037,0.002134866,-1.531884978,0.126570657,neg,ns,0.897666966,0.0000885,0.0000734,1.205337771,0.228992195,pos,ns,0.892483673,Gm48470,Gm48470_Intergenic_downstream,13,79346069,79346118,79346117,79346118,50,-,GCAGCTGTAGACAGCGATACAACTGGAATTGTCTAAGGTCAACAGTGCCG,Distal Intergenic,13,79441143,79441407,265,2,Gm48470-201,95338,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,20,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1312,cg27031992,0.00000955,0.00000184,5.184771829,0.000000391,gain,yes,-0.00000116,0.00000313,-0.370922464,0.710948628,neg,ns,0.0000917,0.000916901,0.099968332,0.920434085,pos,ns,0.036007307,0.0000186,0.0000315,0.589159151,0.556183601,pos,ns,0.044594031,Fezf2,Fezf2_Intergenic_downstream,14,12341427,12341476,12341475,12341476,50,+,TTAATTTGGGTCATTACTTAGAAAGCAAGCGTGAGATCATTTCATCAGCG,Downstream (<1kb),14,12342094,12345844,3751,2,Fezf2-203,4368,Fezf2-203;Fezf2-201;Fezf2-202,Fezf2;Fezf2;Fezf2,0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,21,45,54713,ENSMUSG00000021743,mapped to different genes,14,12341456,12341600,145,*,145,14,0.634482759,0.970827355,0.096551724,8.85E-11,CpGisland,TRUE,U13,Hc-P
24489,cg03981006,0.0000262,0.00000704,3.715770542,0.00024027,gain,ns,0.00000444,0.000012,0.370778233,0.711055952,pos,ns,0.002551087,0.003505435,0.727752097,0.467314649,pos,ns,0.330390605,0.0000871,0.000120552,0.722817844,0.47033677,pos,ns,0.581681116,Gm12933,Gm12933_Intergenic_upstream,4,126639520,126639569,126639520,126639521,50,+,CGGAGATCTCCTCCGAGCAAACCAGCTGCTGTGTAAGTTGTCAAACTGTC,Distal Intergenic,4,126665254,126666125,872,1,Gm12933-201,-25685,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,3,620877,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26983,cg20289873,0.00000348,0.00000274,1.269263506,0.205299188,gain,ns,-0.00000173,0.00000466,-0.370773023,0.711059828,neg,ns,-0.002445865,0.001364371,-1.792668417,0.074000838,neg,ns,1.130763363,0.0000613,0.0000469,1.306230864,0.192442409,pos,ns,0.932278962,Edem2,Edem2_Exon,2,155708955,155709004,155708955,155708956,50,+,CGCTTCTCCACTGTGTATCCCTGAGGAATGTTGTAGAATTCCGGGAGCCC,"Exon (Edem2-201/Edem2, exon 9 of 11)",2,155701677,155729475,27799,2,Edem2-201,20471,Edem2-201;Edem2-204;Edem2-202;Edem2-203,Edem2;Edem2;Edem2;Edem2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,108687,ENSMUSG00000038312,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
516,cg09260015,0.0000849,0.0000105,8.100652765,1.27E-14,gain,yes,0.0000066,0.0000178,0.370738135,0.711085789,pos,ns,0.017760515,0.00521554,3.40530696,0.000747928,pos,ns,3.126140296,-0.000475866,0.000179362,-2.653102804,0.008386453,neg,ns,0.186536285,St18,St18_Intron,1,6733933,6733982,6733933,6733934,50,+,CGGTTGGTAAACAGAGATAAGGAATAAATAGAGCACAGGCAAAAGGAGAT,"Intron (St18-208/St18, intron 2 of 23)",1,6487231,6860934,373704,1,St18-208,246702,St18-208;St18-204;St18-201;St18-206;St18-203;St18-210;St18-212;St18-207;St18-213,St18;St18;St18;St18;St18;St18;St18;St18;St18,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,20,240690,ENSMUSG00000033740,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25234,cg15189866,0.00000402,0.00000287,1.400409825,0.162390717,gain,ns,0.00000181,0.00000488,0.370736469,0.71108703,pos,ns,0.005645582,0.001429498,3.949345521,0.0000971,pos,ns,4.012996106,-0.0000993,0.0000492,-2.019019157,0.044345731,neg,ns,0.079068174,Lin28a,Lin28a_Promoter,4,134018878,134018927,134018926,134018927,50,-,GCTTTTCAAAGGCTCCCAAATTCTAAAAGACAATGACCCAACCCCCCGCG,Promoter (<=1kb),4,134003330,134018841,15512,2,Lin28a-201,-86,Lin28a-201;Lin28a-204,Lin28a;Lin28a,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,3,5,83557,ENSMUSG00000050966,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
17690,cg11602744,0.0000123,0.00000272,4.518697581,0.00000886,gain,ns,0.00000172,0.00000463,0.37073572,0.711087587,pos,ns,0.003017969,0.001356128,2.225430398,0.026771484,pos,ns,1.572327549,-0.0000216,0.0000466,-0.46311444,0.643607287,neg,ns,0.043640168,Zic4,Zic4_threeUTR,9,91386795,91386844,91386843,91386844,50,+,TGACGCGGACTAAATCATTTTCATTTAATTTCCGGTAAACAAAACCCACG,3' UTR,9,91368970,91387793,18824,1,Zic4-204,17825,Zic4-204;Zic4-209;Zic4-205;Zic4-201;Zic4-202,Zic4;Zic4;Zic4;Zic4;Zic4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,18,55,22774,ENSMUSG00000036972,conserved gene and region,9,91386798,91386995,198,*,198,14,0.454545455,1.386,0.070707071,6.05E-09,CpGisland,TRUE,U13,Hc-P
2374,cg12319245,0.0000185,0.0000038,4.864839637,1.80E-06,gain,yes,0.00000239,0.00000646,0.370686457,0.711124246,pos,ns,0.002111926,0.001892179,1.116134364,0.265229022,pos,ns,0.576378957,0.00000678,0.0000651,0.104244142,0.917043015,pos,ns,0.04153045,Tfap2b,Tfap2b_Intron,1,19217350,19217399,19217398,19217399,50,+,ACTAAAGAAGTCTAGTAATTACGAGTCTGAGTTGTTTTTCTGCGCTTCCG,"Intron (Tfap2b-201/Tfap2b, intron 2 of 6)",1,19208914,19238576,29663,1,Tfap2b-201,8436,Tfap2b-201;Tfap2b-204;Tfap2b-202;Tfap2b-205;Tfap2b-203,Tfap2b;Tfap2b;Tfap2b;Tfap2b;Tfap2b,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,40,21419,ENSMUSG00000025927,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
27444,cg02955020,-0.0000107,0.00000366,-2.909742081,0.003878988,loss,ns,-0.00000231,0.00000623,-0.370569513,0.711211272,neg,ns,0.002327697,0.00182403,1.276128506,0.202865362,pos,ns,0.692792101,-0.000141383,0.0000627,-2.253890995,0.024901248,neg,ns,0.965561822,Pbx1,Pbx1_Exon,1,168185018,168185067,168185018,168185019,50,-,CGCTCATGAACAAATCTCCAGAGTTTGACATGTTAAAAGAACTGGAAGAA,"Exon (Pbx1-205/Pbx1, exon 7 of 9)",1,168119364,168432270,312907,2,Pbx1-208,247203,Pbx1-208;Pbx1-205;Pbx1-206;Pbx1-201;Pbx1-202,Pbx1;Pbx1;Pbx1;Pbx1;Pbx1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,84,18514,ENSMUSG00000052534,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18630,cg07222123,0.000205071,0.0000165,12.40929155,5.56E-29,gain,yes,-0.0000104,0.0000281,-0.370555042,0.711222041,neg,ns,0.016302958,0.008224946,1.982135572,0.048346856,pos,ns,1.315631759,-0.0000872,0.000282855,-0.308218347,0.758123193,neg,ns,0.463677964,Hoxb3,Hoxb3_Intron,11,96345317,96345366,96345365,96345366,50,-,ACAGGTCTCTTAATAAATGCCACTATTATAGAGTGTCCGCTAATGCGACG,"Intron (Hoxb3-202/Hoxb3, intron 3 of 3)",11,96323326,96347930,24605,1,Hoxb3-202,21991,Hoxb3-202;Hoxb3-203;Hoxb3-204;Hoxb3-201,Hoxb3;Hoxb3;Hoxb3;Hoxb3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,19,15410,ENSMUSG00000048763,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
20821,cg16526227,0.0000546,0.00000775,7.040295746,1.24E-11,gain,yes,0.00000488,0.0000132,0.370439264,0.711308204,pos,ns,0.01252446,0.003858019,3.246344925,0.001296908,pos,ns,2.887090854,-0.000248022,0.000132677,-1.869365103,0.062514688,neg,ns,0.548221215,Kcnd3,Kcnd3_Intron,3,105559624,105559673,105559672,105559673,50,+,GCAGTGATTAATACAGGTTTAAAATAATCTTTGTCTTCTCCCTTTGTCCG,"Intron (Kcnd3-202/Kcnd3, intron 2 of 6)",3,105452330,105674002,221673,1,Kcnd3-202,107294,Kcnd3-202;Kcnd3-204;Kcnd3-203;Kcnd3-201,Kcnd3;Kcnd3;Kcnd3;Kcnd3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,9,56543,ENSMUSG00000040896,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21765,cg18862618,0.0000056,0.0000025,2.243974167,0.02553959,gain,ns,0.00000157,0.00000424,0.370412936,0.711327798,pos,ns,0.001288074,0.001242468,1.03670532,0.300681194,pos,ns,0.521893734,-0.0000866,0.0000427,-2.027224403,0.043494858,neg,ns,0.935176478,Fam102b,Fam102b_Exon,3,108992684,108992733,108992684,108992685,50,-,CGGCGAGTGGTATTTCCTGATCCAGCAAACTCTGCCAGGTTTAGATCTGC,"Exon (Fam102b-201/Fam102b, exon 4 of 11)",3,108970997,109027273,56277,2,Fam102b-201,34540,Fam102b-201;Fam102b-202,Fam102b;Fam102b,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,3,329739,ENSMUSG00000040339,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5698,cg16877651,-0.00000498,0.00000485,-1.027023305,0.305210181,loss,ns,-0.00000305,0.00000825,-0.370361128,0.711366355,neg,ns,0.000651839,0.002415752,0.269828475,0.787471743,pos,ns,0.103765021,-0.000102686,0.0000831,-1.236025143,0.217384961,neg,ns,0.89465763,Kirrel3,Kirrel3_Intron,9,34587871,34587920,34587871,34587872,50,-,CGTCCGAAACTGGAGATGAAATCAAAGTGGAAAAGATTTAACCAAATTAT,"Intron (Kirrel3-202/Kirrel3, intron 2 of 16)",9,34486126,35035280,549155,1,Kirrel3-202,101745,Kirrel3-202;Kirrel3-206;Kirrel3-209;Kirrel3-201;Kirrel3-208;Kirrel3-205,Kirrel3;Kirrel3;Kirrel3;Kirrel3;Kirrel3;Kirrel3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,21,67703,ENSMUSG00000032036,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11489,cg01344546,-0.0000233,0.00000864,-2.699832456,0.007318315,loss,ns,-0.00000544,0.0000147,-0.370339833,0.711382203,neg,ns,-0.004450788,0.004300647,-1.034911327,0.301516962,neg,ns,0.520688252,-0.00000238,0.000147899,-0.016115371,0.987152717,neg,ns,0.782311373,Upp2,Upp2_Intron,2,58586340,58586389,58586388,58586389,50,+,TTTTTGAATCCCAAGTTCCAAAACCTGTCCCCTATTATGCAGTGCAAACG,"Intron (Upp2-205/Upp2, intron 1 of 1)",2,58567298,58635281,67984,1,Upp2-205,19042,Upp2-205;Upp2-206;Upp2-202;Upp2-207,Upp2;Upp2;Upp2;Upp2,0;19022;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,76654,ENSMUSG00000026839,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1025,cg18894136,-0.000115205,0.0000185,-6.238350687,1.45E-09,loss,yes,0.0000116,0.0000314,0.370319519,0.711397322,pos,ns,-0.024235402,0.009191337,-2.636765708,0.00879172,neg,ns,2.055926139,0.000525756,0.000316089,1.663313848,0.097260212,pos,ns,0.644418084,Gm45042,Gm45042_Exon,8,10924785,10924834,10924785,10924786,50,+,CGCCACCAAATCCATTTGGCTCTATTTAGGAACTAAGTACAGGAAGGTAG,Promoter (5-6kb),8,10929887,10930097,211,1,Gm45042-201,-5053,NA,NA,NA,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
6720,cg20283605,-0.00000233,0.000000907,-2.562855753,0.010853441,loss,ns,0.000000571,0.00000154,0.370270905,0.711433504,pos,ns,-0.0000673,0.000451574,-0.149057734,0.881604996,neg,ns,0.054725957,-0.0000219,0.0000155,-1.41317561,0.158607375,neg,ns,0.015651569,Pcdh1,Pcdh1_threeUTR,18,38185957,38186006,38185957,38185958,50,+,CGGGTCTTTCATTGACAGCTCAGCAAACAAACCGGAAACGAACCGAACCG,3' UTR,18,38185914,38212053,26140,2,Pcdh1-203,26047,Pcdh1-203;Pcdh1-204,Pcdh1;Pcdh1,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,10,17,75599,ENSMUSG00000051375,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
23512,cg01943432,-0.00000243,0.00000185,-1.316585835,0.188950019,loss,ns,0.00000116,0.00000314,0.370262552,0.711439721,pos,ns,0.001461166,0.000920006,1.588213755,0.11325738,pos,ns,0.945933487,-0.000062,0.0000316,-1.958483976,0.051069681,neg,ns,0.962880694,Cacna1c,Cacna1c_Exon,6,118741872,118741921,118741872,118741873,50,-,CGCTAAGCACACCGAGAACCAAGTTAAGTACAAAAAATGACCCTATGATG,"Exon (Cacna1c-205/Cacna1c, exon 4 of 42)",6,118587240,119196231,608992,2,Cacna1c-207,454310,Cacna1c-207;Cacna1c-205;Cacna1c-215;Cacna1c-224;Cacna1c-225;Cacna1c-226;Cacna1c-227;Cacna1c-202;Cacna1c-201;Cacna1c-203;Cacna1c-212;Cacna1c-216;Cacna1c-210;Cacna1c-206;Cacna1c-208;Cacna1c-213;Cacna1c-217;Cacna1c-219;Cacna1c-220;Cacna1c-209;Cacna1c-204;Cacna1c-214;Cacna1c-222,Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,13,15,12288,ENSMUSG00000051331,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24650,cg20107302,-0.00000395,0.00000302,-1.307564856,0.191989841,loss,ns,0.0000019,0.00000513,0.370186862,0.711496055,pos,ns,0.003221381,0.001503155,2.143080133,0.032884847,pos,ns,1.483004181,-0.0000839,0.0000517,-1.623335644,0.105534078,neg,ns,0.912740253,R3hdm2,R3hdm2_threeUTR,10,127483970,127484019,127484018,127484019,50,+,CAACAGGCAGATGACCTCAGCAACCCCTTTGGACAAATGAGCCTTAGTCG,3' UTR,10,127380662,127499360,118699,1,R3hdm2-212,103308,R3hdm2-212;R3hdm2-202;R3hdm2-204;R3hdm2-201;R3hdm2-218;R3hdm2-208;R3hdm2-210;R3hdm2-205;R3hdm2-203;R3hdm2-216;R3hdm2-221;R3hdm2-209;R3hdm2-214;R3hdm2-213,R3hdm2;R3hdm2;R3hdm2;R3hdm2;R3hdm2;R3hdm2;R3hdm2;R3hdm2;R3hdm2;R3hdm2;R3hdm2;R3hdm2;R3hdm2;R3hdm2,0;0;0;0;0;0;0;0;0;0;0;0;-1272;-1463,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,8,71750,ENSMUSG00000025404,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26988,cg02169632,-0.00000537,0.00000344,-1.55842657,0.120152441,loss,ns,-0.00000216,0.00000585,-0.37017417,0.711505502,neg,ns,-0.001163625,0.001713438,-0.67911732,0.497570245,neg,ns,0.303145599,-0.000055,0.0000589,-0.933638972,0.351216783,neg,ns,0.895995611,Mmp24,Mmp24_Exon,2,155815740,155815789,155815788,155815789,50,-,TACTGGAAGTTTGACAACCAGAAACTGAGCGTGGAGCCAGGCTACCCGCG,"Exon (Mmp24-201/Mmp24, exon 9 of 9)",2,155775342,155818366,43025,1,Mmp24-201,40398,BC029722-201;Eif6-201;Eif6-205;Eif6-207;Mmp24-201,BC029722;Eif6;Eif6;Eif6;Mmp24,3637;11136;6691;10647;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,17391,ENSMUSG00000027612,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
228,cg21526797,0.000000125,0.000000276,0.45407239,0.650094468,gain,ns,-0.000000173,0.000000468,-0.370171466,0.711507515,neg,ns,-0.000366736,0.000137146,-2.67406716,0.007891028,neg,ns,2.102866422,0.00000863,0.00000472,1.830765711,0.068095337,pos,ns,0.994346404,Gm21992,Gm21992_threeUTR,19,4801653,4801702,4801701,4801702,50,+,TAGGAGCCCGAATAGCGTGCGTAATCGGAATGGGCATCGGGCAGGCGACG,3' UTR,19,4742913,4811612,68700,2,Gm21992-203,9910,Gm21992-203;Gm21992-206;Gm21992-204;Gm21992-201;Gm21992-205;Gm21992-202;Rbm14-201;Rbm14-202;Rbm14-203,Gm21992;Gm21992;Gm21992;Gm21992;Gm21992;Gm21992;Rbm14;Rbm14;Rbm14,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,21,48,102902673,ENSMUSG00000096370,mapped to different genes,19,4801605,4801812,208,*,208,24,0.586538462,1.371428571,0.115384615,3.42E-20,CpGisland,TRUE,U10,Tr-S
5244,cg21703143,0.00000305,0.00000123,2.489386017,0.013320469,gain,ns,-0.00000077,0.00000208,-0.370126678,0.71154085,neg,ns,-0.000713639,0.000609703,-1.170469487,0.242711085,neg,ns,0.614910389,0.0000345,0.000021,1.646250503,0.100725578,pos,ns,0.030563464,Atxn7l1,Atxn7l1_Exon,12,33147839,33147888,33147887,33147888,50,+,AGTGCCCAGTCCGGAGGCGTTTCTGGGCAAACCCTGGTCCTCCTGGATCG,Promoter (<=1kb),12,33147693,33251146,103454,1,Atxn7l1-201,146,Atxn7l1-201;Atxn7l1-203;Atxn7l1-212;Atxn7l1-206;Atxn7l1-204;Atxn7l1-208,Atxn7l1;Atxn7l1;Atxn7l1;Atxn7l1;Atxn7l1;Atxn7l1,0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,24,380753,ENSMUSG00000020564,conserved gene and region,12,33147823,33147930,108,*,108,9,0.611111111,0.934615385,0.083333333,0.00000176,CpGisland,TRUE,U1,Pr-A
443,cg19314788,-0.00000927,0.00000607,-1.525920276,0.128049293,loss,ns,-0.00000382,0.0000103,-0.370100397,0.711560411,neg,ns,-0.00302517,0.003023311,-1.000614729,0.317793506,neg,ns,0.497854981,-0.000130935,0.000103971,-1.259332928,0.208857479,neg,ns,0.74609142,Gm48608,Gm48608_Intron,12,5955710,5955759,5955758,5955759,50,+,TCTCATTTTCCCTAGTTGTTAACCCTGGGACCATACTAATCAACTCCTCG,"Intron (Gm32442-203/Gm32442-203, intron 2 of 2)",12,6005667,6006240,574,1,Gm48608-201,-49908,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,4,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11513,cg12761052,-0.0000057,0.00000131,-4.34991377,0.0000185,loss,ns,-0.000000824,0.00000223,-0.370092442,0.711566333,neg,ns,-0.000104207,0.000651948,-0.159838883,0.873112089,neg,ns,0.058929999,-0.0000173,0.0000224,-0.770535823,0.441568944,neg,ns,0.041080076,Siah2,Siah2_Exon,3,58691474,58691523,58691474,58691475,50,+,CGTCGGGCAGCAGCTCAACTTCTGGCGGCATTGGTTACACACCAGGTGCC,Promoter (<=1kb),3,58674938,58692400,17463,2,Siah2-201,877,Siah2-201,Siah2,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,20439,ENSMUSG00000036432,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
7052,cg04573984,0.0000764,0.0000124,6.157478814,2.29E-09,gain,yes,0.0000078,0.0000211,0.370063747,0.711587691,pos,ns,0.028914133,0.006174244,4.683023698,0.00000423,pos,ns,5.373223819,-0.000744734,0.000212332,-3.507406847,0.000519398,neg,ns,0.444867691,Tfap2a,Tfap2a_Intron,13,40719912,40719961,40719960,40719961,50,+,TTAGAGCATCAAAGCCCTCTCCGCAGAGCTTGTTTCCATAAAATGGAGCG,"Intron (Tfap2a-201/Tfap2a, intron 5 of 6)",13,40715302,40730443,15142,2,Tfap2a-201,10482,Tfap2a-201;Tfap2a-202;Tfap2a-205;Tfap2a-203;Tfap2a-209;Tfap2a-208;Tfap2a-206;Tfap2a-204,Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,57,21418,ENSMUSG00000021359,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
22903,cg08130687,-0.00000356,0.00000121,-2.94321371,0.003493498,loss,ns,0.00000076,0.00000205,0.369925848,0.711690335,pos,ns,-0.000180384,0.000601607,-0.299837447,0.764502097,neg,ns,0.116621319,-0.0000271,0.0000207,-1.309215166,0.191431047,neg,ns,0.020109941,Lrrc41,Lrrc41_Exon,4,116075549,116075598,116075597,116075598,50,-,CGAGCTGTGCGGGCGGGCGGTGAGCGCCCATATGGGGGTTCTGGAGAGCG,Promoter (<=1kb),4,116075269,116097043,21775,1,Lrrc41-201,280,Lrrc41-201;Lrrc41-206;Lrrc41-202;Lrrc41-204;Lrrc41-205;Uqcrh-201;Uqcrh-204;Uqcrh-202;Uqcrh-203,Lrrc41;Lrrc41;Lrrc41;Lrrc41;Lrrc41;Uqcrh;Uqcrh;Uqcrh;Uqcrh,0;0;0;-1287;-3818;-518;-515;-478;-490,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,9,230654,ENSMUSG00000028703,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
16505,cg02958944,-0.00000629,0.00000229,-2.749115891,0.006326141,loss,ns,0.00000144,0.00000389,0.369846794,0.711749181,pos,ns,-0.000108226,0.001138792,-0.095035687,0.924347882,neg,ns,0.03416455,-0.0000168,0.0000392,-0.429272725,0.668022948,neg,ns,0.943228072,Sfxn5,Sfxn5_Intron,6,85237925,85237974,85237925,85237926,50,+,CGCCTTGCTGTGTTTAAAGTTTTAATTTTTGCTAATTAATGTCAATTAAT,"Intron (Sfxn5-201/Sfxn5, intron 10 of 13)",6,85213049,85333422,120374,2,Sfxn5-201,95448,Sfxn5-201;Sfxn5-205;Sfxn5-202,Sfxn5;Sfxn5;Sfxn5,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,9,94282,ENSMUSG00000033720,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17334,cg12720762,-0.00000318,0.00000269,-1.182549022,0.237894123,loss,ns,0.00000169,0.00000456,0.36970273,0.711856423,pos,ns,0.000186134,0.00133731,0.139185148,0.889394221,pos,ns,0.050905697,0.0000709,0.000046,1.542030519,0.124086323,pos,ns,0.94948611,Agap1,Agap1_Intron,1,89751184,89751233,89751232,89751233,50,+,TGACAGACGCACAGAAGTAATTGGCTGTGCAGAATGGCAGCTCATTGGCG,"Intron (Agap1-201/Agap1, intron 11 of 17)",1,89454806,89897617,442812,1,Agap1-201,296378,Agap1-201;Agap1-204;Agap1-202,Agap1;Agap1;Agap1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,29,347722,ENSMUSG00000055013,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16442,cg19221572,0.00000193,0.00000226,0.857414895,0.391877997,gain,ns,0.00000142,0.00000383,0.369623249,0.711915592,pos,ns,0.00258152,0.001122936,2.298901684,0.022175384,pos,ns,1.654128857,-0.0000797,0.0000386,-2.063098681,0.039935679,neg,ns,0.949420368,Cntln,Cntln_Intron,4,85006892,85006941,85006940,85006941,50,+,GAGGGGATAACCTAGCCAGCCATCCTTGTTTGATCTCCTAGATACATACG,"Intron (Cntln-201/Cntln, intron 12 of 25)",4,84884309,85131921,247613,1,Cntln-201,122583,Cntln-201;Cntln-204,Cntln;Cntln,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,25,338349,ENSMUSG00000038070,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14811,cg09662648,0.0000107,0.00000988,1.085092674,0.278723726,gain,ns,-0.0000062,0.0000168,-0.369594929,0.711936674,neg,ns,0.001105955,0.004918232,0.224868328,0.822229861,pos,ns,0.085006755,-0.000239714,0.000169138,-1.417269941,0.157408265,neg,ns,0.708236897,Myo18a,Myo18a_Intergenic_downstream,11,77867758,77867807,77867806,77867807,50,+,CTTAGCGATTTGCTCCTTAATTGTCCCCCAGCTAGGCTGCGCAGATGCCG,Distal Intergenic,11,77857479,77865076,7598,1,Myo18a-216,10279,Myo18a-208;Myo18a-209;Myo18a-207;Myo18a-201;Myo18a-203;Myo18a-222;Myo18a-223;Myo18a-211;Myo18a-205;Myo18a-210;Myo18a-224;Myo18a-202;Myo18a-220;Myo18a-221;Myo18a-215;Myo18a-216,Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,18,360013,ENSMUSG00000000631,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17718,cg21482536,-0.0000102,0.00000276,-3.702021882,0.000253087,loss,ns,-0.00000174,0.00000469,-0.369591624,0.711939135,neg,ns,-0.000849116,0.001375357,-0.617378842,0.537438087,neg,ns,0.26967156,-0.0000599,0.0000473,-1.26631626,0.206350583,neg,ns,0.063462736,Ssbp2,Ssbp2_fiveUTR,13,91461168,91461217,91461216,91461217,50,+,AGCTGCTCTCGGCACAAGCATGTACGGCAAAGGCAAGAGTAACAGCAGCG,Promoter (<=1kb),13,91461170,91683703,222534,1,Ssbp2-210,0,Ssbp2-209;Ssbp2-201;Ssbp2-202;Ssbp2-206;Ssbp2-204;Ssbp2-208;Ssbp2-210;Ssbp2-207,Ssbp2;Ssbp2;Ssbp2;Ssbp2;Ssbp2;Ssbp2;Ssbp2;Ssbp2,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,6,18,66970,ENSMUSG00000003992,conserved gene and region,13,91460857,91462307,1451,*,1451,185,0.749138525,0.979940131,0.127498277,1.56E-161,CpGisland,TRUE,U1,Pr-A
18638,cg17233506,0.00000179,0.00000401,0.44545563,0.656301431,gain,ns,0.00000252,0.00000681,0.369501645,0.712006121,pos,ns,0.005840334,0.001994727,2.927886851,0.003665447,pos,ns,2.435873035,-0.0000951,0.0000686,-1.385915451,0.16676886,neg,ns,0.114029337,Hoxb1,Hoxb1_fiveUTR,11,96365753,96365802,96365801,96365802,50,+,GTGACATACTGCCGAAAGGTTGTAGGGCAAGAGGGTGTCTCCCCCAAACG,Promoter (<=1kb),11,96365752,96368256,2505,1,Hoxb1-201,1,Hoxb1-201;Hoxb1-202,Hoxb1;Hoxb1,0;-456,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,1,15407,ENSMUSG00000018973,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
27158,cg14651075,-0.00000157,0.00000234,-0.671313578,0.502520697,loss,ns,-0.00000147,0.00000397,-0.3693616,0.712110385,neg,ns,-0.001588868,0.001163987,-1.365022294,0.173235881,neg,ns,0.761362151,0.00000405,0.00004,0.101117657,0.91952243,pos,ns,0.94797212,Sh3kbp1,Sh3kbp1_Exon,X,159824478,159824527,159824526,159824527,50,+,AGACTACCTTTGAAGGGACAATTCTGTACCGAGCTGCACCGGGAAAGACG,"Exon (Sh3kbp1-213/Sh3kbp1, exon 7 of 14)",20,159627272,159978069,350798,1,Sh3kbp1-206,197206,Sh3kbp1-206;Sh3kbp1-213;Sh3kbp1-201;Sh3kbp1-207;Sh3kbp1-211;Sh3kbp1-202,Sh3kbp1;Sh3kbp1;Sh3kbp1;Sh3kbp1;Sh3kbp1;Sh3kbp1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,58194,ENSMUSG00000040990,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
339,cg01127764,0.0000685,0.0000141,4.845634485,0.000002,gain,ns,0.00000886,0.000024,0.369237987,0.712202419,pos,ns,-0.001202681,0.007033366,-0.170996474,0.864338094,neg,ns,0.063316346,0.000397742,0.000241877,1.644396521,0.101107982,pos,ns,0.184617947,Zfhx4,Zfhx4_Promoter,3,5212392,5212441,5212392,5212393,50,+,CGATCGGAATGCCAATAAAATCGATTAAAGGTTTAGTGTTTTACAAACAA,Promoter (6-7kb),3,5218526,5413165,194640,1,Zfhx4-203,-6085,NA,NA,NA,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,10,77,80892,ENSMUSG00000025255,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2356,cg10455041,-0.00000491,0.00000605,-0.810245365,0.418420712,loss,ns,-0.0000038,0.0000103,-0.369205443,0.71222665,neg,ns,-0.006360615,0.003013568,-2.110658958,0.035602255,neg,ns,1.448522495,0.000119906,0.000103636,1.156987826,0.248168079,pos,ns,0.104775693,Tfap2d,Tfap2d_Intron,1,19106472,19106521,19106472,19106473,50,+,CGTAGTTTATCCAATTTTCGACTTAGTGCCATTCAACTGGTCATTTATGC,"Intron (Tfap2d-201/Tfap2d, intron 2 of 7)",1,19103022,19166346,63325,1,Tfap2d-201,3450,Tfap2d-201;Tfap2d-202,Tfap2d;Tfap2d,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,23,226896,ENSMUSG00000042596,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27050,cg10737740,-0.00000693,0.000000983,-7.046447768,1.19E-11,loss,yes,0.000000617,0.00000167,0.369167494,0.712254906,pos,ns,-0.000845791,0.000489296,-1.728589547,0.084878259,neg,ns,1.071203539,0.000018,0.0000168,1.07084508,0.2850721,pos,ns,0.971863519,Rasal2,Rasal2_Exon,1,157176156,157176205,157176204,157176205,50,-,GCAAGGTCCTTGGCTTCAATGATCCATAAACGAAGAACATTTTCAGCTCG,"Exon (Rasal2-201/Rasal2, exon 8 of 18)",1,157135182,157412595,277414,2,Rasal2-201,236390,Rasal2-201;Rasal2-204;Rasal2-203;Rasal2-205;Rasal2-202;Rasal2-207,Rasal2;Rasal2;Rasal2;Rasal2;Rasal2;Rasal2,0;0;0;0;5236;54986,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,10,226525,ENSMUSG00000070565,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3148,cg25664029,0.00000295,0.00000275,1.074808214,0.283296441,gain,ns,0.00000172,0.00000467,0.369153702,0.712265175,pos,ns,0.001422273,0.001367151,1.04031876,0.299002513,pos,ns,0.524325161,-0.0000842,0.000047,-1.790357967,0.074372112,neg,ns,0.920653694,Trpm3,Trpm3_threeUTR,19,22988794,22988843,22988842,22988843,50,+,AGCATCCTCTTTATTCAGTATAAGCCGGCAGCAAGCAGTTCTACCTAACG,3' UTR,19,22139046,22995410,856365,1,Trpm3-218,849748,Trpm3-218;Trpm3-202;Trpm3-203;Trpm3-213;Trpm3-222;Trpm3-207;Trpm3-209;Trpm3-214;Trpm3-216;Trpm3-223;Trpm3-224;Trpm3-201;Trpm3-206;Trpm3-217,Trpm3;Trpm3;Trpm3;Trpm3;Trpm3;Trpm3;Trpm3;Trpm3;Trpm3;Trpm3;Trpm3;Trpm3;Trpm3;Trpm3,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,12,226025,ENSMUSG00000052387,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14324,cg20682981,0.00000392,0.0000105,0.3736046,0.70895388,gain,ns,0.00000658,0.0000178,0.369145164,0.712271532,pos,ns,-0.010389387,0.00521961,-1.990452759,0.047418949,neg,ns,1.324048076,0.000436516,0.000179502,2.431818665,0.015589304,pos,ns,0.611966446,Hic1,Hic1_threeUTR,11,75164880,75164929,75164928,75164929,50,-,GGGGCTAGTGCCACTTGTGCAAAATGAGGAACTTCACATTATCAGTCCCG,3' UTR,11,75164565,75169519,4955,2,Hic1-201,4590,Hic1-201;Hic1-202;Smg6-201;Smg6-202;Smg6-206,Hic1;Hic1;Smg6;Smg6;Smg6,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,10,15248,ENSMUSG00000043099,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
13871,cg24571846,-0.0000209,0.00000783,-2.675326138,0.007862132,loss,ns,-0.00000491,0.0000133,-0.369075861,0.712323134,neg,ns,-0.00598935,0.003896342,-1.537172593,0.125271069,neg,ns,0.902149218,0.000275363,0.000133995,2.055026892,0.040714082,pos,ns,0.874041582,Ola1,Ola1_Intron,2,73143042,73143091,73143090,73143091,50,-,TTCTCTGGCCTTTCTTCACAGAAAGATTAATCATCTGTGAAATGGAAACG,"Intron (Ola1-201/Ola1, intron 5 of 10)",2,73092801,73214447,121647,2,Ola1-201,71356,Ola1-201;Ola1-206;Ola1-203;Ola1-202,Ola1;Ola1;Ola1;Ola1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,19,67059,ENSMUSG00000027108,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25862,cg18030748,0.00000441,0.00000192,2.299656501,0.022131988,gain,ns,-0.0000012,0.00000326,-0.368924765,0.712435643,neg,ns,-0.000533382,0.000955193,-0.558402507,0.576972648,neg,ns,0.238844774,0.00000946,0.0000328,0.287842013,0.773660013,pos,ns,0.048828246,Pax7,Pax7_Intron,4,139824741,139824790,139824741,139824742,50,-,CGGAGCCTAATTAAATTTGGCAGGTCCTTGTACACACAATCAAAACAGCT,"Intron (Pax7-201/Pax7, intron 4 of 8)",4,139737062,139833528,96467,2,Pax7-201,8738,Pax7-201;Pax7-202,Pax7;Pax7,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,27,18509,ENSMUSG00000028736,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
15528,cg19121103,0.000108028,0.0000152,7.092141044,8.99E-12,gain,yes,0.00000955,0.0000259,0.368916129,0.712442074,pos,ns,0.02460935,0.007581182,3.246110034,0.001297943,pos,ns,2.886744406,-0.000509828,0.000260716,-1.955488687,0.051423538,neg,ns,0.436689881,Gm7503,Gm7503_Intergenic_upstream,18,81602402,81602451,81602450,81602451,50,-,TGGAAGCTGTTTGCGATATGGATTAGGAGTCAAGCTGCACACAGACACCG,Distal Intergenic,18,80997003,80997383,381,2,Gm7503-201,-605068,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,17,21,665124,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13378,cg14331389,0.0000036,0.0000108,0.332606244,0.739656333,gain,ns,0.00000679,0.0000184,0.368849615,0.712491604,pos,ns,0.010706287,0.005389938,1.986346888,0.047875123,pos,ns,1.319890098,-0.000115807,0.00018536,-0.624770069,0.532581549,neg,ns,0.420954727,Gbe1,Gbe1_Intron,16,70352077,70352126,70352125,70352126,50,-,CTTTTCCAAGGTAATCAGCAGAGCATGTAGCAAAGACCTGAACAGGAGCG,"Intron (Gbe1-203/Gbe1, intron 1 of 15)",16,70313949,70569716,255768,1,Gbe1-203,38128,Gbe1-203;Gbe1-202;Gbe1-207;Gbe1-204;Gbe1-201;Gbe1-206,Gbe1;Gbe1;Gbe1;Gbe1;Gbe1;Gbe1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,74185,ENSMUSG00000022707,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
9187,cg12401169,0.0000403,0.00000841,4.791328335,0.00000257,gain,ns,-0.00000527,0.0000143,-0.368832095,0.71250465,neg,ns,0.007796474,0.004184589,1.863139913,0.063388129,pos,ns,1.19799207,-0.0000718,0.000143908,-0.498837977,0.618247311,neg,ns,0.413343019,Cadm1,Cadm1_Intergenic_upstream,9,47474920,47474969,47474968,47474969,50,-,CTAATGGGGCTTTGAAAGTCTCTGCTTTATTAGGGCAGCCAGGAAAGCCG,Distal Intergenic,9,47530173,47853385,323213,1,Cadm1-204,-55253,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,18,77,54725,ENSMUSG00000032076,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12030,cg18300694,0.00000145,0.00000122,1.186286801,0.236417444,gain,ns,-0.000000763,0.00000207,-0.368800714,0.712528019,neg,ns,0.000564767,0.000606411,0.931327203,0.352409056,pos,ns,0.45295294,-0.0000278,0.0000209,-1.331186726,0.184105717,neg,ns,0.964552742,Dpp4,Dpp4_Intron,2,62431476,62431525,62431476,62431477,50,-,CGCTAACTTATTAGCTGTGGATTACGTTGTCACTTTGTGTGTTACATTTC,"Intron (Gm13561-201/Gm13561-201, intron 1 of 4)",2,62330073,62412231,82159,2,Dpp4-201,-19294,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,6,13482,ENSMUSG00000035000,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6240,cg09408970,-0.0000416,0.00000782,-5.323797718,0.000000195,loss,yes,-0.0000049,0.0000133,-0.368757772,0.712559997,neg,ns,-0.001970951,0.003892909,-0.506292676,0.613011072,neg,ns,0.212531681,0.00002,0.000133877,0.149322153,0.881396531,pos,ns,0.919331383,Cnnm4,Cnnm4_threeUTR,1,36508650,36508699,36508650,36508651,50,-,CGGGGAGTTTTGTTGTTATGACTCTTGTGTCTTTTGTCACAAAACAATGA,3' UTR,1,36471620,36508764,37145,1,Cnnm4-201,37030,Cnnm3-201;Cnnm3-202;Cnnm3-204;Cnnm4-201,Cnnm3;Cnnm3;Cnnm3;Cnnm4,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,2,94220,ENSMUSG00000037408,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19939,cg21663142,0.0000222,0.00000759,2.921953096,0.003734068,gain,ns,0.00000475,0.0000129,0.368639424,0.712648131,pos,ns,0.002037772,0.003776232,0.53963104,0.589838897,pos,ns,0.229266591,0.000182634,0.000129864,1.406347545,0.160622554,pos,ns,0.856310832,Uchl3,Uchl3_Exon,14,101685667,101685716,101685715,101685716,50,-,AACCATGTAGGCCCTGCAAAGGCTACCAGTCCATCTCTCCGTCTTCGTCG,"Exon (Uchl3-202/Uchl3, exon 5 of 8)",14,101653994,101696125,42132,1,Uchl3-201,31673,Uchl3-201;Uchl3-205;Uchl3-202,Uchl3;Uchl3;Uchl3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,50933,ENSMUSG00000022111,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7194,cg20462996,-0.00000557,0.00000525,-1.060807981,0.289602939,loss,ns,-0.00000329,0.00000892,-0.368631731,0.712653859,neg,ns,-0.000673488,0.002611987,-0.257845304,0.796697383,neg,ns,0.098706609,-0.000137193,0.0000898,-1.527316818,0.127701889,neg,ns,0.903962397,Gm8707,Gm8707_Intron,9,41586083,41586132,41586131,41586132,50,+,TGTTCTATAATCCAGGCAATAAATGCTAATTAGTAATGCTCAAGGATCCG,"Intron (Mir100hg-214/Mir100hg-214, intron 4 of 4)",9,41651893,41654554,2662,1,Gm8707-202,-65761,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,12,667566,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21253,cg13793530,0.000159055,0.0000203,7.825060198,8.06E-14,gain,yes,-0.0000127,0.0000345,-0.368558554,0.712708357,neg,ns,0.07702513,0.010116666,7.613686858,3.24E-13,pos,yes,12.48946908,-0.001505103,0.000347911,-4.326111201,0.0000205,neg,ns,0.519709037,Ssbp3,Ssbp3_Intron,4,107002102,107002151,107002150,107002151,50,-,AATAACACTAAAGCCAACAGCTTGCATCTCTCCAGCAGTACCAAAGGACG,"Intron (Ssbp3-216/Ssbp3, intron 4 of 8)",4,106910701,107031069,120369,1,Ssbp3-216,91401,Ssbp3-216;Ssbp3-201;Ssbp3-215;Ssbp3-202;Ssbp3-203;Ssbp3-207;Ssbp3-213;Ssbp3-214;Ssbp3-211;Ssbp3-212;Ssbp3-204;Ssbp3-206,Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,18,72475,ENSMUSG00000061887,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
15317,cg23675865,0.000000184,0.00000232,0.079338939,0.936814225,gain,ns,0.00000145,0.00000394,0.368455575,0.712785051,pos,ns,0.000647746,0.00115369,0.561456091,0.574892308,pos,ns,0.240413502,-0.0000325,0.0000397,-0.819914021,0.412895079,neg,ns,0.952437704,Gm5909,Gm5909_Intergenic_upstream,8,80299933,80299982,80299981,80299982,50,-,AAGTTTACATGGGAGGTTCAGTGCACCCTTGCTCTTGTTTAGAACATTCG,Distal Intergenic,8,80110806,80112086,1281,2,Gm5909-201,-187896,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,546075,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22670,cg25915657,-0.00000221,0.00000167,-1.327595704,0.185288495,loss,ns,0.00000104,0.00000283,0.368449892,0.712789284,pos,ns,0.000433159,0.000829889,0.521947825,0.602079393,pos,ns,0.220346237,0.0000148,0.0000285,0.517194826,0.605388981,pos,ns,0.958042335,BC052040,BC052040_Intron,2,115658563,115658612,115658563,115658564,50,-,CGCAGGACGGCGAATCCTCTGCTGCAAATGGCATTACAGCTGTGATGAAT,"Intron (BC052040-203/BC052040, intron 5 of 10)",2,115581716,115778768,197053,1,BC052040-203,76847,BC052040-203;BC052040-201,BC052040;BC052040,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,37,49,399568,ENSMUSG00000040282,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4070,cg17752525,-0.00000175,0.00000362,-0.484225765,0.628567569,loss,ns,-0.00000227,0.00000615,-0.368407647,0.712820747,neg,ns,-0.004814737,0.001801769,-2.672227518,0.007933423,neg,ns,2.100539391,-0.0000873,0.000062,-1.40865649,0.159938947,neg,ns,0.920571196,Il1rap,Il1rap_threeUTR,16,26714694,26714743,26714742,26714743,50,+,TTCCCAGTTGTCACAGATGAGACTTTGAGCTTCATTCAGAAAAGCAGACG,3' UTR,16,26581704,26725264,143561,1,Il1rap-202,132990,Il1rap-202;Il1rap-203;Il1rap-201;Il1rap-205,Il1rap;Il1rap;Il1rap;Il1rap,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,3,16180,ENSMUSG00000022514,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4181,cg26674970,0.00000768,0.00000378,2.032036534,0.043002323,gain,ns,-0.00000237,0.00000642,-0.368182051,0.712988773,neg,ns,-0.000722029,0.001882088,-0.38363193,0.701514241,neg,ns,0.153963508,-0.0000384,0.0000647,-0.592799235,0.553747703,neg,ns,0.84367595,Numbl,Numbl_threeUTR,7,27281594,27281643,27281642,27281643,50,+,TGGAATTCAGGGACGGACCCAGCCTGGCTAAGGGAACCATTTCACTGCCG,3' UTR,7,27258725,27282141,23417,1,Numbl-201,22869,Numbl-201;Numbl-205;Numbl-203,Numbl;Numbl;Numbl,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,18223,ENSMUSG00000063160,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11491,cg17011893,-0.000000602,0.00000252,-0.238986127,0.811274256,loss,ns,-0.00000157,0.00000428,-0.368047464,0.713089022,neg,ns,-0.001179089,0.00125287,-0.941110834,0.347380836,neg,ns,0.459194144,0.0000648,0.0000431,1.503199359,0.133805661,pos,ns,0.950899664,Nptn,Nptn_Exon,9,58618654,58618703,58618702,58618703,50,-,TCCCTCTAGCTGGGTTTGTCAAGTCGCCCATGTCAGAAACTAAGCTCACG,"Exon (Nptn-212/Nptn, exon 2 of 8)",9,58582240,58651318,69079,1,Nptn-212,36414,Nptn-212;Nptn-201;Nptn-213;Nptn-206;Nptn-203;Nptn-202;Nptn-211;Nptn-207;Nptn-204,Nptn;Nptn;Nptn;Nptn;Nptn;Nptn;Nptn;Nptn;Nptn,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,20,22,20320,ENSMUSG00000032336,conserved gene and region,9,58618678,58618932,255,*,255,20,0.6,0.879917184,0.078431373,1.96E-13,CpGisland,TRUE,NA,NRS
743,cg13242392,-0.00000382,0.000002,-1.911534163,0.056857833,loss,ns,0.00000125,0.0000034,0.368045918,0.713090174,pos,ns,0.001748543,0.000995635,1.756208774,0.080040201,pos,ns,1.096691827,-0.0000422,0.0000342,-1.232581443,0.218665922,neg,ns,0.052834696,Nipbl,Nipbl_Promoter,15,8444623,8444672,8444671,8444672,50,+,GAACAAAATGCCGACCGGAAGTGCAGCTGCAGGAATGACTCCCTCCGCCG,Promoter (<=1kb),15,8290617,8444463,153847,2,Nipbl-201,-160,Nipbl-201,Nipbl,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,5,36,71175,ENSMUSG00000022141,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
13650,cg12294121,0.0000238,0.00000566,4.203379105,0.0000344,gain,ns,0.00000354,0.00000962,0.368031655,0.713100798,pos,ns,0.004154546,0.002818507,1.474023286,0.141490061,pos,ns,0.849274065,-0.0000772,0.0000969,-0.796896408,0.426121095,neg,ns,0.078098106,Gabrb1,Gabrb1_fiveUTR,5,71699923,71699972,71699923,71699924,50,-,CGCAGGTCCATTCGGGAATTACTGCCCAGCAGCCGACTAAGTTGCATTCC,Promoter (<=1kb),5,71699932,72149037,449106,1,Gabrb1-201,0,Gabrb1-202;Gabrb1-201,Gabrb1;Gabrb1,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,4,14400,ENSMUSG00000029212,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
10432,cg06256296,-0.0000631,0.0000115,-5.47029308,9.27E-08,loss,yes,-0.00000721,0.0000196,-0.368028784,0.713102937,neg,ns,-0.017080279,0.005737468,-2.976971569,0.003140492,neg,ns,2.503002315,0.000151283,0.000197311,0.766721451,0.443830633,pos,ns,0.658885963,Npas3,Npas3_Intron,12,53534794,53534843,53534842,53534843,50,+,GTTGTCACCATCATAATGATAGCTTTGACCTTCTTCCTCTTCAAATGTCG,"Intron (Npas3-204/Npas3, intron 2 of 10)",12,53248157,54069532,821376,1,Npas3-204,286637,Npas3-204;Npas3-201;Npas3-203,Npas3;Npas3;Npas3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,83,103,27386,ENSMUSG00000021010,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15511,cg19221026,-0.0000894,0.000011,-8.155243066,8.75E-15,loss,yes,0.00000685,0.0000186,0.367992488,0.713129973,pos,ns,-0.014821242,0.005453578,-2.717709916,0.006943247,neg,ns,2.158437401,0.000399063,0.000187548,2.127789433,0.034143378,pos,ns,0.818399495,Gm7503,Gm7503_Intergenic_upstream,18,81462688,81462737,81462736,81462737,50,-,AGCAATTTTATACAATGAGACGGTAACAGTTGTTTGTCTGATAAAGCACG,Distal Intergenic,18,80997003,80997383,381,2,Gm7503-201,-465354,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,17,21,665124,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16154,cg07629125,0.0000337,0.00000824,4.090748803,0.0000549,gain,ns,-0.00000515,0.000014,-0.367891288,0.713205358,neg,ns,0.001502669,0.004102734,0.366260552,0.714420497,pos,ns,0.146046094,0.0000599,0.000141093,0.424272081,0.671661674,pos,ns,0.606428618,Pcdh17,Pcdh17_Exon,14,84533096,84533145,84533144,84533145,50,+,GAGCACACTATTCTCATTGCCAACGTTAAACCTTATTTAAAAGCCAAACG,"Exon (Pcdh17-201/Pcdh17, exon 4 of 4)",14,84443563,84539002,95440,1,Pcdh17-201,89533,Pcdh17-201,Pcdh17,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,13,219228,ENSMUSG00000035566,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19140,cg19927064,0.00000311,0.00000114,2.735032102,0.006596469,gain,ns,0.00000071,0.00000193,0.367833078,0.71324872,pos,ns,0.0000207,0.000565463,0.036549771,0.970867518,pos,ns,0.012840029,0.0000362,0.0000194,1.862542203,0.063472522,pos,ns,0.016053494,Cacnb3,Cacnb3_fiveUTR,15,98635158,98635207,98635158,98635159,50,+,CGGACTCCCCCATGTATGACGACTCCTACGTGCCCGGGTTTGAGGACTCG,5' UTR,15,98630840,98639516,8677,1,Cacnb3-203,4318,Cacnb3-203;Cacnb3-207;Cacnb3-202;Cacnb3-204;Cacnb3-201;Cacnb3-206;Cacnb3-205,Cacnb3;Cacnb3;Cacnb3;Cacnb3;Cacnb3;Cacnb3;Cacnb3,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,3,12297,ENSMUSG00000003352,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
9058,cg25186313,-0.00000606,0.00000232,-2.612584817,0.009423868,loss,ns,-0.00000145,0.00000394,-0.367796594,0.713275899,neg,ns,-0.001914659,0.001155387,-1.657158173,0.098499148,neg,ns,1.006567527,-0.0000184,0.0000397,-0.464046699,0.64293998,neg,ns,0.034571173,Irf2,Irf2_fiveUTR,8,46739755,46739804,46739803,46739804,50,+,GTTTCCTCTCCTTGTTTTGCTTTCGATCTGGACTGTTCTCAGGCAAGCCG,Promoter (<=1kb),8,46739761,46807375,67615,1,Irf2-205,0,Irf2-201;Irf2-205;Irf2-210;Irf2-202;Irf2-204;Irf2-203,Irf2;Irf2;Irf2;Irf2;Irf2;Irf2,0;0;0;0;-224;-462,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,4,16363,ENSMUSG00000031627,conserved gene and region,8,46739336,46739847,512,*,512,41,0.642578125,0.776331361,0.080078125,2.50E-27,CpGisland,TRUE,U1,Pr-A
3742,cg26051847,0.0000596,0.00000627,9.4981777,6.03E-19,gain,yes,0.00000392,0.0000107,0.36776965,0.713295971,pos,ns,0.012469528,0.003121137,3.995188194,0.0000808,pos,ns,4.092527085,-0.000307538,0.000107336,-2.865198826,0.004452203,neg,ns,0.123759812,Adgrb3,Adgrb3_fiveUTR,1,25228481,25228530,25228481,25228482,50,-,CGTATGGGATGCATCGGTAAGCACAGTTTTACATCCCTGGGTGGACCACG,Promoter (<=1kb),1,25067476,25228826,161351,2,Adgrb3-203,296,Adgrb3-203;Adgrb3-206;Adgrb3-205;Adgrb3-207;Adgrb3-201;Adgrb3-208;Adgrb3-202;Adgrb3-204;Gm15702-201,Adgrb3;Adgrb3;Adgrb3;Adgrb3;Adgrb3;Adgrb3;Adgrb3;Adgrb3;Gm15702,0;0;0;0;0;0;0;0;4751,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,7,25,210933,ENSMUSG00000033569,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27026,cg04645342,0.00000778,0.00000469,1.659245035,0.09807772,gain,ns,-0.00000293,0.00000797,-0.367690453,0.71335497,neg,ns,0.000844843,0.002335201,0.361786124,0.717758337,pos,ns,0.144021754,-0.000102997,0.0000803,-1.282531102,0.200614565,neg,ns,0.45187457,Negr1,Negr1_fiveUTR,3,156562193,156562242,156562241,156562242,50,+,ACATGATGCTGTTGGTGCAGGGTGCTTGTTGCTCGAACCAGTGGCTGGCG,Promoter (<=1kb),3,156561794,157316445,754652,1,Negr1-202,399,Negr1-202;Negr1-201;Negr1-203;Negr1-205;Negr1-204,Negr1;Negr1;Negr1;Negr1;Negr1,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,6,320840,ENSMUSG00000040037,conserved gene but different region,3,156562100,156562399,300,*,300,26,0.68,0.756987578,0.086666667,1.93E-18,CpGisland,TRUE,U3,Pr-B
13449,cg04206122,0.000000404,0.00000168,0.240932129,0.809766988,gain,ns,-0.00000105,0.00000285,-0.367680393,0.713362465,neg,ns,0.001572451,0.000835048,1.883067854,0.060627295,pos,ns,1.217331811,-0.000067,0.0000287,-2.33159611,0.020362453,neg,ns,0.959428205,Sltm,Sltm_threeUTR,9,70585925,70585974,70585925,70585926,50,+,CGAGATGATCCTTACTGGAGCGAGAATAAAAAGTTGTCTCTAGATACAGA,3' UTR,9,70542754,70592234,49481,1,Sltm-206,43171,Sltm-206;Sltm-201;Sltm-208;Sltm-207,Sltm;Sltm;Sltm;Sltm,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,11,66660,ENSMUSG00000032212,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9823,cg01915021,-0.0000569,0.0000132,-4.311174589,0.0000218,loss,ns,0.00000824,0.0000224,0.367591426,0.713428744,pos,ns,0.004445098,0.006571163,0.676455386,0.499255955,pos,ns,0.301676746,-0.000570882,0.000225982,-2.526230625,0.01202706,neg,ns,0.690433343,Gm43015,Gm43015_Intergenic_downstream,5,50964825,50964874,50964825,50964826,50,+,CGATTTTCATGGCTGAGAGAAAAATAATGGAAATTTCTCTAATGTAGTAA,Distal Intergenic,5,50921342,50921906,565,1,Gm43015-201,43483,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,4,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18356,cg20997314,0.0000615,0.0000111,5.546968088,6.24E-08,gain,yes,-0.00000692,0.0000188,-0.367528481,0.713475639,neg,ns,-0.002133419,0.005519438,-0.386528326,0.699370603,neg,ns,0.155292627,0.000281279,0.000189813,1.481872759,0.139389918,pos,ns,0.175571523,Otp,Otp_Promoter,13,94869868,94869917,94869916,94869917,50,-,TTGTTTTTCTTGTGATTTTATTAAAAGTCACTCCTCATCTCCAGAATGCG,Promoter (5-6kb),13,94875602,94885130,9529,1,Otp-201,-5734,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,27,34,18420,ENSMUSG00000021685,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
8795,cg13879806,-0.00000435,0.00000154,-2.834798621,0.004886611,loss,ns,-0.000000959,0.00000261,-0.367474449,0.713515895,neg,ns,-0.000528718,0.000764165,-0.691889684,0.489524483,neg,ns,0.310225582,0.0000114,0.0000263,0.435024496,0.663847341,pos,ns,0.963187472,Oga,Oga_Intron,19,45761929,45761978,45761977,45761978,50,+,GACCTGCAAAGAAACAATGTGAAGTGTATACCTAGAGCCGCTGCGCTTCG,"Intron (Oga-201/Oga, intron 11 of 15)",19,45750259,45783551,33293,2,Oga-201,21573,Oga-201;Oga-204;Oga-203;Oga-206,Oga;Oga;Oga;Oga,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,21,76055,ENSMUSG00000025220,conserved gene but different region,19,45761874,45761986,113,*,113,12,0.575221239,1.308880309,0.10619469,8.79E-10,CpGisland,TRUE,U10,Tr-S
7936,cg16492083,-0.0000252,0.0000103,-2.444996794,0.015041736,loss,ns,0.00000642,0.0000175,0.367429188,0.713549617,pos,ns,0.01247347,0.005121183,2.435661621,0.015427832,pos,ns,1.811695099,-0.000472921,0.000176117,-2.685265152,0.007637336,neg,ns,0.816743138,Hif1an,Hif1an_Intron,19,44641562,44641611,44641610,44641611,50,+,TAATTTCTTTTTCTGAGGGGACATTAATCATTGCCCTGTGCTTTTGGGCG,"Intron (Gm35460-201/Gm35460-201, intron 5 of 6)",19,44562850,44576274,13425,1,Hif1an-201,78712,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,31,319594,ENSMUSG00000036450,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22052,cg22591115,-0.00000473,0.00000126,-3.742533569,0.000217056,loss,ns,-0.000000789,0.00000215,-0.367417108,0.713558616,neg,ns,-0.000871844,0.000629185,-1.385672956,0.166842859,neg,ns,0.777692377,0.0000188,0.0000216,0.868570184,0.385754194,pos,ns,0.03921968,Map2k6,Map2k6_fiveUTR,11,110399101,110399150,110399101,110399102,50,-,CGTCTGCGCACTAAGATACTCAGTTCCAAGTTTGGAGCTTTTAGCTGCCA,Promoter (<=1kb),11,110399122,110513641,114520,1,Map2k6-201,0,Map2k6-201;Map2k6-202;Map2k6-204,Map2k6;Map2k6;Map2k6,0;0;-109,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,5,26399,ENSMUSG00000020623,conserved gene but different region,11,110398916,110399108,193,*,193,14,0.533678757,1.03051106,0.07253886,4.33E-09,CpGisland,TRUE,U2,Pr-W
10867,cg09456687,-0.0000114,0.00000444,-2.566665695,0.01073743,loss,ns,0.00000277,0.00000754,0.367381893,0.713584854,pos,ns,0.000749962,0.002207914,0.339669685,0.734335306,pos,ns,0.134105591,-0.0000992,0.0000759,-1.307047177,0.192165374,neg,ns,0.933714952,Neurod6,Neurod6_Exon,6,55679119,55679168,55679167,55679168,50,+,CCACCAAGTTTGTAGTTGGCTGGGAAAGACCTTTGCATAAGTTTTGGACG,"Exon (Neurod6-201/Neurod6, exon 2 of 2)",6,55677822,55681263,3442,2,Neurod6-201,2095,Neurod6-201,Neurod6,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,16,11922,ENSMUSG00000037984,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
206,cg21275430,0.0000108,0.00000579,1.870691952,0.06232982,gain,ns,-0.00000361,0.00000984,-0.367327755,0.713625191,neg,ns,0.007560042,0.002882178,2.623031231,0.009145937,pos,ns,2.038771793,-0.000218941,0.0000991,-2.208893245,0.027913243,neg,ns,0.547132211,Gm21992,Gm21992_threeUTR,19,4765308,4765357,4765356,4765357,50,+,CATTGTGTAAGCCTCTTGTGTTGTGCTCTCTTTCAGGTAGGATAATTGCG,3' UTR,19,4742913,4811612,68700,2,Gm21992-203,46255,Gm21992-203;Rbm4b-207;Rbm4b-208;Rbm4b-209;Rbm4b-204;Rbm4b-205;Rbm4b-202;Rbm4b-201;Rbm4b-203;Rbm4b-210;Rbm4b-206,Gm21992;Rbm4b;Rbm4b;Rbm4b;Rbm4b;Rbm4b;Rbm4b;Rbm4b;Rbm4b;Rbm4b;Rbm4b,0;0;0;0;8765;8744;8743;0;8727;8403;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,21,48,102902673,ENSMUSG00000096370,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10942,cg10289234,-0.00000281,0.00000322,-0.870983025,0.384437409,loss,ns,0.00000201,0.00000548,0.367245128,0.713686755,pos,ns,0.003472141,0.001604446,2.164074322,0.031222024,pos,ns,1.505538952,-0.000113598,0.0000552,-2.058791786,0.040349421,neg,ns,0.94017872,Tcf7l2,Tcf7l2_fiveUTR,19,55894631,55894680,55894631,55894632,50,+,CGGAAATAATACGATCACAGTCCGCTAAAAAATTTGACACCTCTGATGCA,5' UTR,19,55741820,55933229,191410,1,Tcf7l2-213,152811,Tcf7l2-213;Tcf7l2-201;Tcf7l2-208;Tcf7l2-211;Tcf7l2-212;Tcf7l2-206;Tcf7l2-204;Tcf7l2-205;Tcf7l2-222;Tcf7l2-215;Tcf7l2-214;Tcf7l2-207;Tcf7l2-202;Tcf7l2-209;Tcf7l2-210;Tcf7l2-217;Tcf7l2-220;Tcf7l2-218;Tcf7l2-203;Tcf7l2-216;Tcf7l2-219;Tcf7l2-221,Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,88,21416,ENSMUSG00000024985,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10196,cg19692099,0.000115182,0.0000129,8.930674879,3.83E-17,gain,yes,-0.00000805,0.0000219,-0.367231338,0.71369703,neg,ns,-0.003449841,0.006419153,-0.537429277,0.591356684,neg,ns,0.22815049,0.000774464,0.000220754,3.508266489,0.000517786,pos,ns,0.212980855,Hoxa9,Hoxa9_fiveUTR,6,52226282,52226331,52226282,52226283,50,-,CGTAAATCACTCCGCACGCTATTAATGGTCCGATGTTTTGCAGTCATAAT,5' UTR,6,52223100,52227370,4271,2,Hoxa9-201,1039,Hoxa10-202;Hoxa10-203;Hoxa7-204;Hoxa9-201;Hoxa9-203;Hoxa9-202;Hoxa9-204;Hoxa9-205,Hoxa10;Hoxa10;Hoxa7;Hoxa9;Hoxa9;Hoxa9;Hoxa9;Hoxa9,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,14,15405,ENSMUSG00000038227,mapped to different genes,6,52226223,52226313,91,*,91,15,0.659340659,1.6039953,0.164835165,2.40E-15,CpGisland,TRUE,U3,Pr-B
4630,cg22592649,-0.00000479,0.00000158,-3.022867152,0.002712884,loss,ns,0.000000988,0.00000269,0.367217562,0.713707295,pos,ns,0.00085908,0.000788542,1.089453937,0.276799924,pos,ns,0.557834034,-0.0000579,0.0000271,-2.135377535,0.033513746,neg,ns,0.038866507,E2f3,E2f3_fiveUTR,13,29986006,29986055,29986054,29986055,50,-,GCTGCTGACAATGAATGAAGGGATACGGTTTACGCGCCAAGGTCCTCCCG,Promoter (<=1kb),13,29906575,29986063,79489,2,E2f3-201,8,E2f3-203;E2f3-204;E2f3-201;E2f3-202,E2f3;E2f3;E2f3;E2f3,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,10,13557,ENSMUSG00000016477,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
25568,cg13980705,0.0000056,0.00000951,0.588644967,0.55652811,gain,ns,0.00000593,0.0000162,0.367194206,0.713724698,pos,ns,-0.007975883,0.004732238,-1.685435661,0.092910818,neg,ns,1.031933716,0.000107319,0.000162741,0.659444331,0.510100062,pos,ns,0.855592541,Ebf3,Ebf3_Intron,7,137244617,137244666,137244665,137244666,50,-,CTCCACTATCTGTTTGAAGAGTATTCAGGACTATTTGCATCATTTTATCG,"Intron (Ebf3-204/Ebf3, intron 6 of 15)",7,137193673,137314445,120773,2,Ebf3-204,69779,Ebf3-204;Ebf3-201;Ebf3-202;Ebf3-203;Ebf3-208;Ebf3-205,Ebf3;Ebf3;Ebf3;Ebf3;Ebf3;Ebf3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,62,84,13593,ENSMUSG00000010476,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27619,cg16879052,0.00000228,0.0000184,0.124270487,0.901181654,gain,ns,0.0000114,0.0000312,0.367146665,0.713760121,pos,ns,0.007682886,0.009136228,0.840925341,0.401037925,pos,ns,0.396814556,-0.0000126,0.000314194,-0.040082625,0.968053056,neg,ns,0.553408604,Kcnj9,Kcnj9_Exon,1,172326105,172326154,172326105,172326106,50,-,CGTTCACCATGGAGCCCAGGATGGCCTGCAGCAGCAGCAGCACGATGCCC,"Exon (Kcnj9-201/Kcnj9, exon 3 of 4)",1,172320501,172329318,8818,2,Kcnj9-201,3164,Kcnj9-201;Kcnj9-202;Kcnj9-203,Kcnj9;Kcnj9;Kcnj9,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,6,16524,ENSMUSG00000038026,conserved gene and region,1,172325701,172326106,406,*,406,49,0.642857143,1.182758621,0.120689655,7.23E-42,CpGisland,TRUE,U3,Pr-B
26905,cg08682946,0.000033,0.0000129,2.565522954,0.010772109,gain,ns,0.00000803,0.0000219,0.367106454,0.713790084,pos,ns,0.003100621,0.006404691,0.484117103,0.628644592,pos,ns,0.201594816,0.000064,0.000220257,0.290514809,0.771616673,pos,ns,0.462605827,Prdm16,Prdm16_Intron,4,154543941,154543990,154543989,154543990,50,+,TTATTAACAGGGAGAGCCATTTGTTCCCTGTGACAATATTTGACTTGTCG,"Intron (Prdm16-201/Prdm16, intron 1 of 16)",4,154316125,154636866,320742,2,Prdm16-201,92876,Prdm16-201;Prdm16-202;Prdm16-203;Prdm16-204;Prdm16-205;Prdm16-206;Prdm16-210;Prdm16-207;Prdm16-212,Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,32,70673,ENSMUSG00000039410,conserved gene and region,4,154543989,154544066,78,*,78,11,0.615384615,1.557168784,0.141025641,2.04E-10,CpGisland,TRUE,U11,Tr-P
21169,cg17624348,0.00000885,0.00000597,1.484187843,0.138775139,gain,ns,0.00000372,0.0000101,0.366958901,0.713900035,pos,ns,0.002609948,0.002969191,0.879010028,0.380076668,pos,ns,0.42012879,-0.0000807,0.00010211,-0.790102006,0.430072159,neg,ns,0.613468209,Gm17053,Gm17053_Intergenic_upstream,12,106611160,106611209,106611208,106611209,50,+,GCTGTCTAATATGTTGAATAGTCTTTCATCTTGTCAAACACTTCCATGCG,Distal Intergenic,12,106544837,106546326,1490,2,Gm17053-201,-64834,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,6,108167962,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3372,cg19273182,-0.00000352,0.00000175,-2.003702324,0.045971856,loss,ns,0.00000109,0.00000298,0.366945101,0.713910318,pos,ns,0.000292879,0.000873433,0.33531893,0.737611317,pos,ns,0.132172429,-0.0000141,0.00003,-0.469943063,0.638726109,neg,ns,0.082671989,Papolg,Papolg_fiveUTR,11,23895176,23895225,23895224,23895225,50,-,CCGAGTAGTGAAAACACCACAAAACCGGCTCTATTTATGACAATACAGCG,Promoter (<=1kb),11,23862646,23895253,32608,2,Papolg-201,28,Papolg-201;Papolg-204;Papolg-202,Papolg;Papolg;Papolg,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,9,216578,ENSMUSG00000020273,conserved gene and region,11,23895124,23895356,233,*,233,19,0.639484979,0.894343434,0.081545064,4.21E-13,CpGisland,TRUE,NA,NRS
14437,cg09143669,-0.000000716,0.00000137,-0.521730011,0.602230881,loss,ns,-0.000000855,0.00000233,-0.366742096,0.7140616,neg,ns,-0.000580913,0.0006827,-0.850905264,0.39547875,neg,ns,0.402876847,0.0000134,0.0000235,0.572837898,0.567169703,pos,ns,0.970020877,Crk,Crk_Exon,11,75692480,75692529,75692480,75692481,50,-,CGAAGGCAAGAGAGGGATGATTCCAGTCCCTTACGTCGAGAAGTATAGAC,"Exon (Crk-201/Crk, exon 2 of 3)",11,75679259,75706065,26807,1,Crk-201,13221,Crk-201;Crk-204;Crk-203;Crk-202;Crk-205,Crk;Crk;Crk;Crk;Crk,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,7,12928,ENSMUSG00000017776,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15589,cg10767126,0.0000626,0.00000909,6.883585173,3.25E-11,gain,yes,0.00000566,0.0000154,0.366656549,0.714125353,pos,ns,0.011929637,0.004523658,2.637166176,0.008781579,pos,ns,2.056427366,-0.000284424,0.000155568,-1.828288948,0.068467052,neg,ns,0.103176147,Asic2,Asic2_Promoter,11,81968492,81968541,81968540,81968541,50,-,AAATAAAGTCCTCCCCCCTACACACGCCACTAGAGACAAGATTAAAAGCG,Promoter (<=1kb),11,80880169,81968457,1088289,2,Asic2-202,-84,Asic2-202,Asic2,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,10,11418,ENSMUSG00000020704,conserved gene but different region,11,81968478,81968941,464,*,464,31,0.586206897,0.777849881,0.066810345,2.00E-18,CpGisland,TRUE,U13,Hc-P
12672,cg10261479,0.000108516,0.0000126,8.615546886,3.61E-16,gain,yes,-0.00000784,0.0000214,-0.366548537,0.714205853,neg,ns,0.024575523,0.006268824,3.92027618,0.000108906,pos,ns,3.962947764,-0.000563053,0.000215584,-2.611752878,0.009446325,neg,ns,0.092038694,Shisa6,Shisa6_Exon,11,66525535,66525584,66525583,66525584,50,-,CCAGCTTCTCGTGGCGCTTCTTGCAGCAGAAGCGGTAGTAGCAGGTACCG,Promoter (<=1kb),11,66211725,66525795,314071,2,Shisa6-202,211,Shisa6-202;Shisa6-201,Shisa6;Shisa6,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,4,380702,ENSMUSG00000053930,conserved gene and region,11,66525155,66526797,1643,*,1643,221,0.734023128,1.010348263,0.134510043,7.10E-199,CpGisland,TRUE,U13,Hc-P
17166,cg12631133,0.00000687,0.00000763,0.900728448,0.368431928,gain,ns,0.00000475,0.000013,0.366537552,0.714214039,pos,ns,-0.003549878,0.00379807,-0.934653057,0.35069459,neg,ns,0.455070933,0.0000177,0.000130615,0.135366757,0.89240976,pos,ns,0.882218519,Ano4,Ano4_threeUTR,10,88982193,88982242,88982193,88982194,50,-,CGATGTAAAATGTGGAGCTGTTCAGATTGACAAACTGAAAAAGAAACATT,3' UTR,10,88948994,89257790,308797,2,Ano4-206,275548,Ano4-206;Ano4-204;Ano4-208;Ano4-210;Ano4-207,Ano4;Ano4;Ano4;Ano4;Ano4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,8,9,320091,ENSMUSG00000035189,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26333,cg20237663,0.0000396,0.00000879,4.501740525,0.00000955,gain,ns,0.00000547,0.0000149,0.366506828,0.714236938,pos,ns,0.007408151,0.004373377,1.693920099,0.091284879,pos,ns,1.039601155,-0.000144618,0.0001504,-0.961553095,0.337023547,neg,ns,0.660726113,Kiz,Kiz_Intergenic_upstream,2,146823865,146823914,146823913,146823914,50,+,GCTTGGACTTCATTAGCATGCAGGGCCTGGCTGTTCATTTGCCGGCTGCG,Distal Intergenic,2,146855864,146970097,114234,1,Kiz-201,-31950,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,29,228730,ENSMUSG00000074749,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23740,cg03439357,0.000021,0.0000122,1.721774456,0.086107921,gain,ns,0.00000759,0.0000207,0.366503271,0.714239589,pos,ns,0.007672995,0.006067104,1.26468811,0.206933089,pos,ns,0.684170059,-0.0000296,0.000208647,-0.141855007,0.887286679,neg,ns,0.700591152,Foxo6,Foxo6_Intergenic_downstream,4,120259865,120259914,120259913,120259914,50,+,CAGAAAGCACTTAGGTTTACGATGTGCATGAAATTGATCGCCAGTTGGCG,Distal Intergenic,4,120267079,120287349,20271,2,Foxo6-201,27435,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,42,329934,ENSMUSG00000052135,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
9786,cg09349422,-0.000000576,0.00000929,-0.062059858,0.950555157,loss,ns,0.00000578,0.0000158,0.366443568,0.714284087,pos,ns,-0.008244686,0.004621524,-1.78397552,0.075405684,neg,ns,1.122595916,0.000276033,0.000158934,1.736781755,0.08341905,pos,ns,0.789337556,Gm48777,Gm48777_Intron,12,50873791,50873840,50873791,50873792,50,+,CGACTAATTACAGCAAGAAGCTGTGCTCATTAGCTGTTCTCATCTGGCTC,"Intron (Gm48779-201/Gm48779-201, intron 6 of 8)",12,50895099,50895471,373,2,Gm48777-201,21631,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,10,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17222,cg17245416,-0.00000208,0.00000595,-0.349626978,0.726856057,loss,ns,0.0000037,0.0000101,0.366430721,0.714293662,pos,ns,-0.005002143,0.002961368,-1.689132287,0.092199556,neg,ns,1.035271172,-0.000063,0.000101841,-0.618650175,0.536601145,neg,ns,0.734732753,Nog,Nog_Intergenic_downstream,11,89276646,89276695,89276646,89276647,50,+,CGTATAATTAGTTGAGTGACTGACTCTAAATTCAGTAACTCCCATTGGTA,Distal Intergenic,11,89300638,89302332,1695,2,Nog-201,25637,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,36,18121,ENSMUSG00000048616,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5744,cg02692845,0.0000276,0.00000736,3.750551438,0.000210524,gain,ns,-0.00000458,0.0000125,-0.366030196,0.714592205,neg,ns,0.005469472,0.003663187,1.493091215,0.136430357,pos,ns,0.865088983,-0.000137449,0.000125977,-1.091067258,0.276090579,neg,ns,0.016907282,Sox2,Sox2_Exon,3,34651059,34651108,34651059,34651060,50,-,CGCAGACCTACATGAACGGCTCGCCCACCTACAGCATGTCCTACTCGCAG,Promoter (<=1kb),3,34650405,34652461,2057,1,Sox2-201,654,Sox2-201,Sox2,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,62,20674,ENSMUSG00000074637,mapped to different genes,3,34650151,34651388,1238,*,1238,126,0.673667205,0.899335824,0.10177706,2.40E-96,CpGisland,TRUE,NA,NRS
25100,cg25113573,-0.0000013,0.000000526,-2.466685834,0.014177533,loss,ns,0.000000327,0.000000894,0.365927895,0.714668465,pos,ns,0.000321708,0.000261877,1.228468628,0.220202905,pos,ns,0.657176956,-0.0000173,0.00000901,-1.92144594,0.055592198,neg,ns,0.012106852,Fam76a,Fam76a_Exon,4,132922353,132922402,132922353,132922354,50,+,CGCACCTTGCACAGCTGCTGCCCCTGAGACAGCGCCTCGAAGGGGAAGCG,Promoter (<=1kb),4,132899213,132922558,23346,2,Fam76a-201,156,Fam76a-201;Fam76a-202;Fam76a-203,Fam76a;Fam76a;Fam76a,0;0;-1444,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,230789,ENSMUSG00000028878,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
6289,cg18663696,0.0000463,0.00000631,7.338625994,1.91E-12,gain,yes,-0.00000392,0.0000107,-0.36568702,0.714848036,neg,ns,0.004388694,0.003140728,1.397349373,0.163307818,pos,ns,0.786993023,-0.0000448,0.000108009,-0.414812317,0.678566219,neg,ns,0.095697585,Nrn1,Nrn1_fiveUTR,13,36734266,36734315,36734314,36734315,50,-,ATCTGCCGTTCAACTTAAGTCCCATCCTACGTTTAGTCAAACCATTTGCG,Promoter (<=1kb),13,36725625,36734477,8853,2,Nrn1-201,162,Nrn1-204;Nrn1-201;Nrn1-203;Nrn1-202;Nrn1-205,Nrn1;Nrn1;Nrn1;Nrn1;Nrn1,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,8,9,68404,ENSMUSG00000039114,conserved gene and region,13,36734112,36734395,284,*,284,18,0.538732394,0.874444064,0.063380282,1.46E-10,CpGisland,TRUE,U1,Pr-A
8258,cg16958493,-0.0000168,0.00000461,-3.648989788,0.000308813,loss,ns,-0.00000286,0.00000783,-0.365593554,0.714917719,neg,ns,-0.002877351,0.002294645,-1.253941572,0.210807997,neg,ns,0.676112919,0.000051,0.0000789,0.64568281,0.518962432,pos,ns,0.796366837,Zcchc7,Zcchc7_Intron,4,44905701,44905750,44905701,44905702,50,+,CGCTCTCATTAAGATTTGCCGCTAGCAGTGGCGGTGTTCAGCATGTATGT,"Intron (Zcchc7-203/Zcchc7, intron 5 of 8)",4,44756568,44932203,175636,1,Zcchc7-203,149133,Zcchc7-203;Zcchc7-207;Zcchc7-205;Zcchc7-201;Zcchc7-202,Zcchc7;Zcchc7;Zcchc7;Zcchc7;Zcchc7,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,27,27,319885,ENSMUSG00000035649,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
11926,cg04616259,0.0000102,0.00000454,2.253174026,0.024946929,gain,ns,0.00000282,0.00000771,0.365556671,0.714945217,pos,ns,-0.002062027,0.002257693,-0.913333836,0.361776769,neg,ns,0.441559325,0.000119847,0.0000776,1.543583021,0.123709558,pos,ns,0.937397858,Gm13626,Gm13626_Intergenic_downstream,2,61686069,61686118,61686069,61686070,50,+,CGAGCACTCGCTCTGTGTGCACTGAATAGGATCACGATCCGGAGAGCTGA,Distal Intergenic,2,61706893,61707591,699,2,Gm13626-201,21473,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,8,,NA,mapped to different genes,2,61686048,61686109,62,*,62,9,0.629032258,1.468421053,0.14516129,1.18E-08,CpGisland,TRUE,U15,NS
10279,cg17065193,-0.0000469,0.00000848,-5.535162216,6.63E-08,loss,yes,0.00000526,0.0000144,0.365486731,0.714997363,pos,ns,-0.004365027,0.004218221,-1.034802737,0.301567601,neg,ns,0.520615319,-0.000150376,0.000145064,-1.036613409,0.300723975,neg,ns,0.894724006,Kcnh8,Kcnh8_Intron,17,52348478,52348527,52348478,52348479,50,-,CGAAGGAAGTTTTATTTAGACTTATAAGGGCTGATCTATTCCCATACTGT,"Intron (Gm49912-201/Gm49912-201, intron 1 of 1)",17,52602709,52979194,376486,1,Kcnh8-201,-254231,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,8,211468,ENSMUSG00000035580,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4518,cg01363010,-0.00000593,0.00000303,-1.955145591,0.051464202,loss,ns,-0.00000188,0.00000515,-0.365362212,0.715090204,neg,ns,-0.00225651,0.001509398,-1.494973524,0.135938592,neg,ns,0.866657233,0.0000238,0.0000519,0.458673339,0.646790166,pos,ns,0.943331889,Ntm,Ntm_Intron,9,29378693,29378742,29378741,29378742,50,+,GGAGCAGTGTTTTGGTTCTCCGCACTACACATGTCAAAATGGTGATGCCG,"Intron (Ntm-201/Ntm, intron 2 of 7)",9,28994750,29963129,968380,2,Ntm-201,584387,Ntm-201;Ntm-203;Ntm-202;Ntm-204;Ntm-210,Ntm;Ntm;Ntm;Ntm;Ntm,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,27,32,235106,ENSMUSG00000059974,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18543,cg21748571,0.0000359,0.00000983,3.653599992,0.000303545,gain,ns,0.0000061,0.0000167,0.365048998,0.715323755,pos,ns,0.007436851,0.004891493,1.520364321,0.12943871,pos,ns,0.887935825,0.000181921,0.000168218,1.081457156,0.280334364,pos,ns,0.224917549,Hoxb8,Hoxb8_Exon,11,96282977,96283026,96282977,96282978,50,-,CGTCAACTCACTGTTCTCCAAATACAAAACCGGGGAGTCCCTGCGCCCCA,"Exon (Hoxb8-201/Hoxb8, exon 1 of 2)",11,96281905,96285315,3411,1,Hoxb8-201,1072,Hoxb7-201;Hoxb8-201;Hoxb8-202;Hoxb8-203,Hoxb7;Hoxb8;Hoxb8;Hoxb8,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,26,15416,ENSMUSG00000056648,mapped to different genes,11,96282929,96283401,473,*,473,44,0.642706131,0.918325023,0.093023256,3.13E-32,CpGisland,TRUE,NA,NRS
24876,cg12587836,0.0000541,0.00000594,9.113375765,1.02E-17,gain,yes,0.00000368,0.0000101,0.364971205,0.715381766,pos,ns,0.0068871,0.002956312,2.329625612,0.020467921,pos,ns,1.688926268,-0.000128482,0.000101667,-1.263748516,0.207269794,neg,ns,0.145981374,Pitx2,Pitx2_Intron,3,129202589,129202638,129202637,129202638,50,-,TCAGGGACTAATCCTGTGATTTTACTGCAGAATCACTAAATCTGGAGCCG,"Intron (Pitx2-207/Pitx2, intron 1 of 4)",3,129199878,129219590,19713,1,Pitx2-207,2711,Pitx2-207;Pitx2-201;Pitx2-203;Pitx2-205;Pitx2-204,Pitx2;Pitx2;Pitx2;Pitx2;Pitx2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,24,18741,ENSMUSG00000028023,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
23323,cg23261357,-0.00000308,0.0000115,-0.269129888,0.788008766,loss,ns,0.0000071,0.0000195,0.364965279,0.715386185,pos,ns,0.001238778,0.00569882,0.217374536,0.828059474,pos,ns,0.08193847,0.0000449,0.000195982,0.229163828,0.8188927,pos,ns,0.847981528,Cdca7l,Cdca7l_Intron,12,117806422,117806471,117806422,117806423,50,-,CGAAAAAACTGTTATTTGTGAGAGAAGATACTCATGGCAAGCAATCATCC,"Intron (Cdca7l-202/Cdca7l, intron 1 of 4)",12,117804289,117870047,65759,1,Cdca7l-202,2133,Cdca7l-202,Cdca7l,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,7,217946,ENSMUSG00000021175,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11850,cg16210594,-0.00000334,0.00000602,-0.55456644,0.579591117,loss,ns,0.00000373,0.0000102,0.364837057,0.715481806,pos,ns,0.003672292,0.002997554,1.225096379,0.221468932,pos,ns,0.654687188,-0.000256127,0.000103086,-2.48460074,0.013497214,neg,ns,0.88112162,Gm11590,Gm11590_Intergenic_upstream,1,61159018,61159067,61159018,61159019,50,-,CGAAAAATTACACCATTATGTCATTTTCGTGATGTGCTCATCAACAGGAG,Distal Intergenic,1,61121378,61124004,2627,2,Gm11590-201,-35063,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20378,cg08583673,0.00000898,0.00000341,2.628962786,0.008991419,gain,ns,-0.00000212,0.0000058,-0.364819794,0.71549468,neg,ns,0.003340263,0.001699573,1.965353877,0.050265817,pos,ns,1.298727257,-0.000112621,0.0000584,-1.926855826,0.054911416,neg,ns,0.052341385,Hoxc5,Hoxc5_Exon,15,103014506,103014555,103014506,103014507,50,-,CGTGGATGACCAAACTGCACATGAGCCACGGTAAACTTTAGGACTTCATT,"Exon (Hoxc5-201/Hoxc5, exon 1 of 2)",15,102967443,103015676,48234,1,Hoxc5-202,47063,Hoxc4-202;Hoxc5-202;Hoxc5-201;Hoxc6-202;Hoxc6-203;Hoxc6-201,Hoxc4;Hoxc5;Hoxc5;Hoxc6;Hoxc6;Hoxc6,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,72,134,15424,ENSMUSG00000022485,mapped to different genes,15,103014167,103014734,568,*,568,41,0.588028169,0.835773758,0.072183099,1.73E-25,CpGisland,TRUE,U13,Hc-P
23185,cg22448491,-0.00000908,0.00000416,-2.182670295,0.029810206,loss,ns,0.00000258,0.00000707,0.364798544,0.715510527,pos,ns,0.004048181,0.002071409,1.954312619,0.051563039,pos,ns,1.287661494,-0.000191003,0.0000712,-2.681283785,0.007726681,neg,ns,0.918532415,Rnf220,Rnf220_Intron,4,117409493,117409542,117409493,117409494,50,+,CGCCCACCCCCAAACAAGAGAGGAAAAGTTAATTGAAAATGCTGTTTAAT,"Intron (Rnf220-201/Rnf220, intron 2 of 14)",4,117271463,117497052,225590,2,Rnf220-201,87510,Rnf220-201;Rnf220-207,Rnf220;Rnf220,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18667,cg01227361,0.0000365,0.00000515,7.086727602,9.30E-12,gain,yes,-0.00000319,0.00000876,-0.364751752,0.715545424,neg,ns,0.007922675,0.002565336,3.088357751,0.002194776,pos,ns,2.658609866,-0.000107693,0.0000882,-1.220712301,0.22312265,neg,ns,0.068895621,Tenm4,Tenm4_Exon,7,96644125,96644174,96644125,96644126,50,+,CGGACTCAGACTCTGAGGAAGAGTTTGTCCCTAATTCATTCTTAGTTAAA,Promoter (<=1kb),7,96644172,96732280,88109,1,Tenm4-207,0,Tenm4-201;Tenm4-203;Tenm4-202;Tenm4-207,Tenm4;Tenm4;Tenm4;Tenm4,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,17,26,23966,ENSMUSG00000048078,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13006,cg24884825,-0.0000246,0.0000139,-1.778411537,0.076316299,loss,ns,0.00000858,0.0000235,0.3646697,0.715606618,pos,ns,-0.019658055,0.006893312,-2.851757775,0.00463974,neg,ns,2.333506331,0.000506613,0.00023706,2.137063909,0.03337518,pos,ns,0.821978611,Rora,Rora_Intron,9,69114300,69114349,69114348,69114349,50,+,TCTTTTGGAAATTCTCTATTCTCTCACCTTATTAATGTTAAAACAAAACG,"Intron (Rora-201/Rora, intron 1 of 10)",9,68653786,69388246,734461,1,Rora-201,460514,Rora-201;Rora-206,Rora;Rora,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,19,19883,ENSMUSG00000032238,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26903,cg16393928,0.0000818,0.0000155,5.283943181,0.000000239,gain,yes,-0.00000959,0.0000263,-0.364654488,0.715617963,neg,ns,0.023545898,0.007701976,3.057124179,0.002429303,pos,ns,2.61451829,-0.000408081,0.00026487,-1.540684056,0.124413813,neg,ns,0.354495813,Prdm16,Prdm16_Intron,4,154500055,154500104,154500055,154500056,50,+,CGCAGATTGAGACGTCAGCCTGGTCCAACTGCAGCAAATTAGCAATTTTT,"Intron (Prdm16-201/Prdm16, intron 2 of 16)",4,154316125,154636866,320742,2,Prdm16-201,136762,Prdm16-201;Prdm16-202;Prdm16-203;Prdm16-204;Prdm16-205;Prdm16-206;Prdm16-210;Prdm16-207;Prdm16-209;Prdm16-212,Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,32,70673,ENSMUSG00000039410,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3698,cg05750171,0.00000475,0.00000292,1.628263356,0.104484882,gain,ns,-0.00000181,0.00000496,-0.364395369,0.715811226,neg,ns,0.002368693,0.001452628,1.630625902,0.103984815,pos,ns,0.983030075,-0.0000922,0.00005,-1.84655997,0.065763958,neg,ns,0.937893021,Zfp574,Zfp574_Exon,7,25081043,25081092,25081043,25081044,50,-,CGCCATAAATGCAGCATTTGTGGCAAGATGTTCAAGAAGAAGTCTCACGT,"Exon (Zfp574-202/Zfp574, exon 2 of 2)",7,25077205,25083492,6288,1,Zfp574-202,3838,Zfp574-204;Zfp574-203;Zfp574-202;Zfp574-201,Zfp574;Zfp574;Zfp574;Zfp574,8476;8397;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,232976,ENSMUSG00000045252,conserved gene and region,7,25080889,25081044,156,*,156,11,0.641025641,0.688879968,0.070512821,0.000000414,CpGisland,TRUE,U10,Tr-S
6628,cg09192464,0.00000173,0.00000372,0.46605646,0.641502387,gain,ns,0.0000023,0.00000632,0.364349159,0.715845693,pos,ns,0.003326692,0.001850745,1.79748801,0.07323126,pos,ns,1.135303491,-0.000127164,0.0000636,-1.99795191,0.04659525,neg,ns,0.909037321,Zfp536,Zfp536_Intergenic_upstream,7,37833607,37833656,37833607,37833608,50,+,CGCCGTGAATATATTCTCTGCTTCAAGAAGTAATTGGTAATTACAATGGT,Distal Intergenic,7,37569629,37773641,204013,2,Zfp536-208,-59966,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,112,243937,ENSMUSG00000043456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8242,cg01873051,0.00000399,0.00000544,0.733220493,0.463978052,gain,ns,-0.00000336,0.00000924,-0.364324703,0.715863935,neg,ns,0.0000162,0.0027056,0.006002211,0.995214818,pos,ns,0.002083166,-0.000107903,0.000093,-1.159684319,0.247069771,neg,ns,0.638668837,Slf2,Slf2_Intergenic_upstream,19,44899882,44899931,44899882,44899883,50,-,CGATGACATGGTGGATTGTGCGCTATTGGTCAGTAAATTGGATTGTCAGG,Distal Intergenic,19,44931151,44983188,52038,1,Slf2-201,-31269,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,15,17,226151,ENSMUSG00000036097,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
16253,cg13212087,0.0000591,0.00000896,6.597437837,1.81E-10,gain,yes,0.00000554,0.0000152,0.364267674,0.715906473,pos,ns,0.0119968,0.004459189,2.690354809,0.007524477,pos,ns,2.12352367,-0.000199094,0.000153351,-1.298286926,0.195153788,neg,ns,0.320860921,Bnc2,Bnc2_fiveUTR,4,84672383,84672432,84672431,84672432,50,+,GGGATGTCACACACTACCTGTCCGTGGGCTTTATTGAACCGCCTAACCCG,5' UTR,4,84275095,84675034,399940,2,Bnc2-201,2602,Bnc2-201;Bnc2-202;Bnc2-214;Bnc2-215;Bnc2-206;Bnc2-211;Bnc2-217;Bnc2-207;Bnc2-203;Bnc2-209;Bnc2-204;Bnc2-210,Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,8,91,242509,ENSMUSG00000028487,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
15895,cg04523259,0.0000265,0.00000445,5.948469605,7.30E-09,gain,yes,0.00000275,0.00000756,0.364217795,0.715943679,pos,ns,0.003304653,0.002214995,1.491945868,0.136730261,pos,ns,0.864135357,0.000101782,0.0000762,1.336181833,0.182469829,pos,ns,0.082173816,Sfrp2,Sfrp2_Exon,3,83766716,83766765,83766716,83766717,50,-,CGGCTGCCCAACCTGCTGGGCCACGAGACCATGAAGGAGGTGCTGGAGCA,Promoter (<=1kb),3,83766321,83774316,7996,1,Sfrp2-201,395,Sfrp2-201;Sfrp2-202;Sfrp2-203,Sfrp2;Sfrp2;Sfrp2,0;0;-88,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,20319,ENSMUSG00000027996,conserved gene and region,3,83766337,83767061,725,*,725,73,0.686896552,0.872888904,0.100689655,9.57E-56,CpGisland,TRUE,U3,Pr-B
13218,cg11417765,0.0000165,0.00000592,2.784938869,0.005683118,gain,ns,0.00000366,0.0000101,0.364109904,0.71602416,pos,ns,0.001000538,0.002947403,0.339464412,0.734489763,pos,ns,0.134014253,0.000169294,0.000101361,1.670209603,0.095887223,pos,ns,0.109148226,Foxb1,Foxb1_Promoter,9,69769881,69769930,69769881,69769882,50,-,CGTGTCAATTAATTAGCAGACAGAAGAATCTCATTATGGTGCTCAAAACC,Promoter (8-9kb),9,69757710,69760940,3231,2,Foxb1-201,-8990,NA,NA,NA,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,8,21,64290,ENSMUSG00000059246,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
20431,cg12097121,0.000046,0.00000571,8.054440283,1.74E-14,gain,yes,-0.00000353,0.0000097,-0.364074334,0.716050694,neg,ns,0.001661197,0.002842363,0.584442252,0.559347883,pos,ns,0.252318001,-0.0000416,0.0000977,-0.425119246,0.671044686,neg,ns,0.193969272,Hoxc4,Hoxc4_Intron,15,103035330,103035379,103035378,103035379,50,-,CATAAATTTTATGGCTTAGCTACTCTGGGCAGTCCGAGCCATGTGCTACG,"Intron (Hoxc4-202/Hoxc4, intron 3 of 3)",15,103018934,103036405,17472,1,Hoxc4-202,16396,Hoxc4-202;Hoxc4-201,Hoxc4;Hoxc4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,91,15423,ENSMUSG00000075394,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
11541,cg22588813,-0.0000112,0.00000238,-4.681812855,0.00000426,loss,ns,-0.00000147,0.00000405,-0.364074192,0.7160508,neg,ns,-0.002668372,0.001185696,-2.250469577,0.025119897,neg,ns,1.599982147,0.0000769,0.0000408,1.886372364,0.060179308,pos,ns,0.930016733,Pnn,Pnn_Exon,12,59068286,59068335,59068286,59068287,50,-,CGTGGATTCTCAGATAGTGGAGGAGGACCCCCAGCCAAACAGAGAGACCT,"Exon (Pnn-201/Pnn, exon 3 of 9)",12,59066884,59073998,7115,1,Pnn-201,1402,Pnn-201;Pnn-203;Pnn-204;Pnn-202,Pnn;Pnn;Pnn;Pnn,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,18949,ENSMUSG00000020994,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
25345,cg00957471,-0.0000067,0.00000241,-2.78328854,0.005711388,loss,ns,0.00000149,0.00000409,0.364014671,0.716095201,pos,ns,-0.001315916,0.001198546,-1.097927141,0.273088345,neg,ns,0.563696835,0.00000433,0.0000412,0.105134125,0.916337374,pos,ns,0.949004857,Nav1,Nav1_Exon,1,135465897,135465946,135465945,135465946,50,-,CAGGGACAGGGTGCTCCCCATTTGGGAGCCGCTGTACAGCTCGAAGGCCG,"Exon (Nav1-201/Nav1, exon 10 of 30)",1,135434580,135585355,150776,2,Nav1-201,119409,Nav1-201;Nav1-202;Nav1-208;Nav1-205;Nav1-209;Nav1-206;Nav1-207,Nav1;Nav1;Nav1;Nav1;Nav1;Nav1;Nav1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,12,215690,ENSMUSG00000009418,mapped to different genes,1,135465776,135465997,222,*,222,16,0.630630631,0.746846089,0.072072072,2.79E-10,CpGisland,TRUE,NA,NRS
7554,cg16614832,0.00000176,0.00000114,1.549471016,0.122288796,gain,ns,0.000000703,0.00000193,0.364013194,0.716096303,pos,ns,0.000605245,0.000565435,1.070405914,0.28526933,pos,ns,0.544744918,-0.0000195,0.0000194,-1.002780298,0.316748962,neg,ns,0.040961178,Sobp,Sobp_fiveUTR,10,43174068,43174117,43174116,43174117,50,-,CCATGTTTTTGTGTCTGGTTTCTGTGGAGATGAAATGGCTGCTGCCGCCG,Promoter (<=1kb),10,43002500,43174530,172031,2,Sobp-201,413,Sobp-201;Sobp-202,Sobp;Sobp,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,19,109205,ENSMUSG00000038248,conserved gene and region,10,43174113,43174627,515,*,515,69,0.761165049,0.951991856,0.133980583,2.29E-62,CpGisland,TRUE,U3,Pr-B
25422,cg02774962,-0.0000662,0.0000142,-4.67866454,0.00000432,loss,ns,0.00000876,0.0000241,0.364010083,0.716098623,pos,ns,-0.017778975,0.007047212,-2.522838272,0.012141287,neg,ns,1.915735271,0.000311842,0.000242353,1.286724552,0.19915034,pos,ns,0.810928897,Gm5904,Gm5904_Intergenic_upstream,7,136390396,136390445,136390396,136390397,50,-,CGTTAGCAATTTATGAAACAGCCATAATTTTCAGCTTATGGACAAAGAAA,Distal Intergenic,7,136657209,136658073,865,1,Gm5904-201,-266813,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,14,17,546009,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15059,cg00921109,0.00000022,0.000000383,0.574979708,0.565722078,gain,ns,0.000000237,0.00000065,0.36396993,0.716128577,pos,ns,-0.000454253,0.00019053,-2.38416082,0.017719469,neg,ns,1.751549305,0.0000162,0.00000655,2.465833877,0.014210631,pos,ns,0.990121807,Nlk,Nlk_Exon,11,78696212,78696261,78696212,78696213,50,+,CGCCATTGTAAGCCGCCATCATTTTTGCGTTGGCTCTTGCGCCACAAAGA,"Exon (Nlk-201/Nlk, exon 1 of 11)",11,78567168,78697373,130206,2,Nlk-201,1112,Nlk-201;Nlk-202,Nlk;Nlk,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,6,18099,ENSMUSG00000017376,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12988,cg07540286,-0.0000102,0.0000068,-1.504793886,0.133395232,loss,ns,0.0000042,0.0000116,0.363891817,0.71618685,pos,ns,0.003420983,0.003385252,1.010554664,0.313017728,pos,ns,0.504431065,-0.000139059,0.000116419,-1.194473912,0.233205759,neg,ns,0.878472181,Stc1,Stc1_threeUTR,14,69038953,69039002,69038953,69038954,50,-,CGTGTTATGAATCTGTGCTGGCCATGGACGAATATGAATGTCACATTTGA,3' UTR,14,69029238,69041804,12567,1,Stc1-201,9715,Stc1-201,Stc1,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,9,20855,ENSMUSG00000014813,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24283,cg18850771,0.00000549,0.00000159,3.442932121,0.000654545,gain,ns,-0.000000985,0.00000271,-0.363833859,0.716230088,neg,ns,0.003308828,0.000793459,4.170129671,0.0000396,pos,ns,4.402789552,-0.0000955,0.0000273,-3.498643356,0.000536093,neg,ns,0.029994941,Pou3f1,Pou3f1_Intron,4,124478114,124478163,124478114,124478115,50,+,CGGTTGTTTATGAAGACACAGCCCGAATCCATTTGCATTTTAATATTCTC,"Intron (1700057H15Rik-202/1700057H15Rik-202, intron 2 of 3)",4,124656807,124660655,3849,1,Pou3f1-201,-178644,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,43,85,18991,ENSMUSG00000090125,mapped to different genes,4,124478033,124478138,106,*,106,9,0.58490566,1.063545151,0.08490566,0.0000015,CpGisland,TRUE,U3,Pr-B
8369,cg10801485,-0.0000402,0.00000884,-4.551400427,0.00000766,loss,ns,-0.00000546,0.000015,-0.363810668,0.71624739,neg,ns,-0.005954675,0.004397743,-1.354029886,0.176713082,neg,ns,0.752731299,-0.000117913,0.000151238,-0.779653315,0.436189782,neg,ns,0.768397118,Zeb2,Zeb2_Intron,2,45058383,45058432,45058383,45058384,50,-,CGATTGCGGCGGCTTTCTGAGGTGAGAGAAACTGACAGCACTAACTCTCC,"Intron (Zeb2-212/Zeb2, intron 3 of 10)",2,44983632,45117395,133764,2,Zeb2-212,58963,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-218;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23647,cg26409855,-0.00000765,0.00000163,-4.692687693,0.00000405,loss,ns,0.00000101,0.00000277,0.363697523,0.716331802,pos,ns,-0.000492529,0.00081104,-0.607281231,0.544108843,neg,ns,0.264314216,0.0000178,0.0000279,0.636872088,0.524678177,pos,ns,0.060118074,Ino80,Ino80_fiveUTR,2,119477613,119477662,119477613,119477614,50,+,CGGCCACTTTCACTCACTGAGAGGAGCGGAGCAGGGACACGGGGAGCCAT,Promoter (<=1kb),2,119402709,119477613,74905,2,Ino80-202,0,Ino80-201;Ino80-202,Ino80;Ino80,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,3,68142,ENSMUSG00000034154,conserved gene and region,2,119477267,119477844,578,*,578,78,0.759515571,0.936829856,0.134948097,1.01E-70,CpGisland,TRUE,U1,Pr-A
7644,cg09980083,-0.000022,0.0000106,-2.075757663,0.038740471,loss,ns,-0.00000654,0.000018,-0.363313337,0.716618452,neg,ns,-0.001971209,0.00527019,-0.374030002,0.708637686,neg,ns,0.149575755,-0.0000929,0.000181241,-0.512558277,0.60862535,neg,ns,0.840579137,Tln1,Tln1_Exon,4,43547618,43547667,43547666,43547667,50,+,AGCTCATTTAGGGCCTGGGTGACAGCTGTGGCTGCTGCTCCTACCCCTCG,Promoter (<=1kb),4,43545410,43547647,2238,2,Tln1-208,0,Tln1-201;Tln1-208;Tln1-203,Tln1;Tln1;Tln1,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,21894,ENSMUSG00000028465,conserved gene and region,4,43547538,43547749,212,*,212,11,0.641509434,0.505308776,0.051886793,0.00000799,CpGisland,TRUE,U10,Tr-S
13157,cg13219248,-0.00000121,0.0000014,-0.861248504,0.389766848,loss,ns,-0.000000865,0.00000238,-0.363177188,0.716720046,neg,ns,0.001148047,0.00069815,1.644413736,0.101104426,pos,ns,0.995229833,-0.0000371,0.000024,-1.546955722,0.122894156,neg,ns,0.059172155,Tcf4,Tcf4_Intron,18,69592826,69592875,69592874,69592875,50,-,CTAGCCAGCAGCAGAGACAGATGGCAGAGTTATTAGATGTGCATCATACG,"Intron (Tcf4-201/Tcf4, intron 9 of 20)",18,69344146,69684343,340198,1,Tcf4-201,248680,Tcf4-201;Tcf4-207;Tcf4-240;Tcf4-254;Tcf4-246;Tcf4-206;Tcf4-202;Tcf4-257;Tcf4-232;Tcf4-248;Tcf4-231;Tcf4-205;Tcf4-253;Tcf4-238;Tcf4-249;Tcf4-219;Tcf4-227;Tcf4-250;Tcf4-229;Tcf4-260;Tcf4-226;Tcf4-216;Tcf4-256;Tcf4-230;Tcf4-221;Tcf4-234;Tcf4-258;Tcf4-217;Tcf4-247;Tcf4-252;Tcf4-218;Tcf4-243;Tcf4-237;Tcf4-239;Tcf4-262;Tcf4-223;Tcf4-212;Tcf4-204;Tcf4-225;Tcf4-222;Tcf4-261;Tcf4-255;Tcf4-203;Tcf4-241;Tcf4-236;Tcf4-228;Tcf4-220;Tcf4-242,Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,42,66,21413,ENSMUSG00000053477,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
13344,cg03575911,-0.00000142,0.00000156,-0.908046455,0.364559032,loss,ns,-0.000000965,0.00000266,-0.363091738,0.71678381,neg,ns,-0.0000403,0.000778331,-0.051818364,0.958706797,neg,ns,0.018314194,0.0000246,0.0000268,0.919783638,0.358400989,pos,ns,0.973102482,Trim9,Trim9_Exon,12,70250945,70250994,70250993,70250994,50,+,GCTGCAGGGTACCTGTTGGTGTGCGAGTTGTTGTGCATGAACCAGCTCCG,"Exon (Trim9-211/Trim9, exon 8 of 10)",12,70244533,70347350,102818,2,Trim9-202,96356,Trim9-202;Trim9-201;Trim9-211;Trim9-209;Trim9-206;Trim9-212,Trim9;Trim9;Trim9;Trim9;Trim9;Trim9,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,7,94090,ENSMUSG00000021071,conserved gene and region,12,70250939,70251238,300,*,300,16,0.543333333,0.722891566,0.053333333,2.23E-08,CpGisland,TRUE,U11,Tr-P
20886,cg11827910,0.0000294,0.00000217,13.58170836,2.74E-33,gain,yes,-0.00000134,0.00000368,-0.36307636,0.716795286,neg,ns,0.004718338,0.001078567,4.374636471,0.0000166,pos,ns,4.778953686,-0.00000592,0.0000371,-0.159583502,0.873313101,neg,ns,0.022608299,Pax6,Pax6_Exon,2,105682374,105682423,105682374,105682375,50,-,CGGAGCGACTTCCGCCTATTTCCAGAAATTAAGCTCAAACTTGACGTGCA,"Exon (Pax6-221/Pax6, exon 1 of 2)",2,105668900,105697364,28465,1,Pax6-206,13474,Pax6-206;Pax6-207;Pax6-210;Pax6-214;Pax6-208;Pax6-202;Pax6-205;Pax6-225;Pax6-204;Pax6-201;Pax6-203;Pax6-224;Pax6-219;Pax6-221;Pax6-213;Pax6-211;Pax6-222;Pax6-212;Pax6-215;Pax6-223;Pax6-209;Pax6-216,Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,31,78,18508,ENSMUSG00000027168,conserved gene but different region,2,105682176,105682419,244,*,244,18,0.524590164,1.074626866,0.073770492,1.12E-11,CpGisland,TRUE,NA,NRS
25699,cg19854353,-0.00000099,0.00000152,-0.650038725,0.51614862,loss,ns,-0.00000094,0.00000259,-0.363037675,0.716824154,neg,ns,0.000095,0.00075834,0.125274125,0.900387736,pos,ns,0.045570429,-0.0000102,0.0000261,-0.391740958,0.695518775,neg,ns,0.964507299,Metap1,Metap1_Exon,3,138468836,138468885,138468884,138468885,50,-,GCATCAATGGCTTGCATCAGGCACTCATATGTGGTCTGAACAAGTTTCCG,"Exon (Metap1-201/Metap1, exon 8 of 11)",3,138458956,138489515,30560,2,Metap1-201,20630,Metap1-201;Metap1-205;Metap1-207;Metap1-202;Metap1-206,Metap1;Metap1;Metap1;Metap1;Metap1,0;0;0;0;12899,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,75624,ENSMUSG00000005813,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9563,cg27093328,0.0000204,0.00000257,7.928607339,4.04E-14,gain,yes,-0.00000159,0.00000437,-0.363011991,0.716843322,neg,ns,0.004476405,0.001280866,3.494826129,0.000543521,pos,ns,3.264784028,-0.00000714,0.000044,-0.162120679,0.87131644,neg,ns,0.049593712,Foxg1,Foxg1_Promoter,12,49381609,49381658,49381657,49381658,50,-,AGCAGTTCAATGACAGCTTGCACTTATGAGCATGCAATCAGCTAATTTCG,Promoter (1-2kb),12,49382660,49384364,1705,1,Foxg1-202,-1051,Foxg1-202;Foxg1-203;Foxg1-204;Foxg1-201;Gm43517-201,Foxg1;Foxg1;Foxg1;Foxg1;Gm43517,0;-1142;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,11,27,15228,ENSMUSG00000020950,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
7398,cg22760542,0.0000417,0.00000585,7.127722979,7.20E-12,gain,yes,-0.00000361,0.00000995,-0.362958836,0.716882989,neg,ns,-0.003964271,0.002913853,-1.360491184,0.174662919,neg,ns,0.757799287,0.000227724,0.000100207,2.272536368,0.023738572,pos,ns,0.833310261,Pou3f3,Pou3f3_Intergenic_upstream,1,42540460,42540509,42540508,42540509,50,+,GTTTTCCCACTTTATCTGCAAAATGCACAATTGAGCTTTAAAACAGCTCG,Distal Intergenic,1,42694925,42703176,8252,1,Pou3f3-202,-154416,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,37,18993,ENSMUSG00000045515,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23541,cg18159091,0.00000801,0.000000865,9.266151968,3.35E-18,gain,yes,-0.000000533,0.00000147,-0.362874456,0.716945961,neg,ns,0.00063853,0.000430461,1.483362127,0.13899417,pos,ns,0.857003415,-0.00000494,0.0000148,-0.334015097,0.738594007,neg,ns,0.020876919,Sp8,Sp8_Promoter,12,118840935,118840984,118840935,118840936,50,-,CGTGGCCATTATGGCCTGAAATGGGCCAGGTTTGAAGCGAGCTTCCTGCG,Promoter (5-6kb),12,118846329,118852576,6248,1,Sp8-201,-5394,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,27,29,320145,ENSMUSG00000048562,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
1359,cg20656725,0.000025,0.00000556,4.494435398,0.00000986,gain,ns,-0.00000343,0.00000944,-0.362729727,0.717053974,neg,ns,0.006733436,0.002767018,2.433463407,0.015520014,pos,ns,1.809107899,-0.000192944,0.0000952,-2.02762994,0.043453166,neg,ns,0.107258996,Sox1,Sox1_Exon,8,12430358,12430407,12430358,12430359,50,+,CGAGGGAGCCCCTTATCCCGGTGACAGAATGGGACAAGCTGGGAAAGGCT,"Exon (Sox1ot-201/Sox1ot-201, exon 7 of 9)",8,12395295,12400126,4832,1,Sox1-201,35063,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,15,20664,ENSMUSG00000096014,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
21419,cg06901404,-0.0000166,0.0000099,-1.678964101,0.094166652,loss,ns,0.0000061,0.0000168,0.36270246,0.717074324,pos,ns,0.004163104,0.004929145,0.844589413,0.398991449,pos,ns,0.399036412,-0.00037999,0.000169513,-2.241660738,0.025690535,neg,ns,0.706914453,Zswim6,Zswim6_Exon,13,107726916,107726965,107726964,107726965,50,-,TGGGTCATGGCCAGGGTGGCCAGCTTGTAGGCCCTCATGGGGTACCCGCG,"Exon (Zswim6-204/Zswim6, exon 13 of 13)",13,107724617,107890064,165448,2,Zswim6-204,163099,Zswim6-204;Zswim6-201;Zswim6-203;Zswim6-202,Zswim6;Zswim6;Zswim6;Zswim6,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,14,26,67263,ENSMUSG00000032846,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15635,cg11474615,-0.0000169,0.00000334,-5.078261229,0.000000659,loss,yes,-0.00000206,0.00000567,-0.362695129,0.717079795,neg,ns,0.002333058,0.001660517,1.405018615,0.161017014,pos,ns,0.793128231,-0.0000974,0.0000571,-1.705291606,0.089141801,neg,ns,0.937845198,Nfib,Nfib_Intron,4,82484588,82484637,82484588,82484589,50,-,CGTTACAATGAAATCTGGGGACTTGATACATACATTTGCTGTAATAAAAC,"Intron (Nfib-201/Nfib, intron 2 of 11)",4,82290173,82505308,215136,2,Nfib-201,20671,Nfib-201;Nfib-203;Nfib-202;Nfib-205;Nfib-206;Nfib-204;Nfib-207;Nfib-209;Nfib-210,Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,66,18028,ENSMUSG00000008575,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3412,cg06659440,0.0000195,0.00000332,5.881621151,1.05E-08,gain,yes,0.00000204,0.00000564,0.362614317,0.71714011,pos,ns,0.002491866,0.00165165,1.508713343,0.13239053,pos,ns,0.87814308,0.0000546,0.0000568,0.960855557,0.337373641,pos,ns,0.072426674,A830031A19Rik,A830031A19Rik_Intron,11,24061926,24061975,24061974,24061975,50,+,TTATTGCAGAAGCCTCTGGTCATTTCCATATATTGAAATGCGCCCAAGCG,"Intron (A830031A19Rik-201/A830031A19Rik, intron 1 of 2)",11,24048955,24075054,26100,2,A830031A19Rik-201,13079,A830031A19Rik-201,A830031A19Rik,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,23,268391,NA,mapped to different genes,11,24061919,24062118,200,*,200,12,0.615,0.639658849,0.06,0.000000585,CpGisland,TRUE,NA,NRS
12208,cg14023813,0.000000868,0.000000619,1.402378843,0.161802746,gain,ns,-0.000000381,0.00000105,-0.362520495,0.717210136,neg,ns,-0.0000928,0.000307885,-0.301330622,0.763364416,neg,ns,0.117268089,-0.0000104,0.0000106,-0.98447296,0.325650746,neg,ns,0.012467542,Ctnna3,Ctnna3_Promoter,10,63429481,63429530,63429481,63429482,50,+,CGAGCAGGGTTCGAACCTGCGCGGGGAGACCCCATTGGATTTCAAGTCCA,Promoter (<=1kb),10,63430098,65002965,1572868,1,Ctnna3-203,-568,Ctnna3-203,Ctnna3,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,11,216033,ENSMUSG00000060843,conserved gene but different region,10,63429470,63430167,698,*,698,81,0.650429799,1.101396762,0.116045845,2.68E-67,CpGisland,TRUE,U2,Pr-W
26111,cg15310102,-0.00000608,0.00000606,-1.002728545,0.316773898,loss,ns,0.00000373,0.0000103,0.362195235,0.717452922,pos,ns,-0.00000727,0.003018409,-0.002409831,0.998078785,neg,ns,0.000835176,-0.0000544,0.000103803,-0.524188883,0.600521758,neg,ns,0.893077521,Gm2505,Gm2505_Intron,3,143947953,143948002,143947953,143947954,50,-,CGAACTGAAAACCTACTCATTAGAGATGTTATAGGCAAAGTAAAAGCCTA,"Intron (Gm42707-202/Gm42707-202, intron 1 of 1)",3,143872995,143873819,825,1,Gm2505-201,75007,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,37,100039938,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19897,cg25854175,-0.00000358,0.00000186,-1.922878016,0.055411301,loss,ns,0.00000115,0.00000317,0.362152554,0.717484782,pos,ns,0.000671218,0.000927607,0.723602159,0.469855671,pos,ns,0.328035527,-0.0000125,0.0000319,-0.392788382,0.694745739,neg,ns,0.949786497,Nkx6-1,Nkx6-1_Intergenic_downstream,5,101591044,101591093,101591092,101591093,50,-,AAGAACCAGCTGCTCCCTAACACAGGGGAGCGTGGCACCATCATTTACCG,Distal Intergenic,5,101658139,101664996,6858,2,Nkx6-1-201,73952,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,10,18096,ENSMUSG00000035187,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23030,cg21106323,-0.0000072,0.0000027,-2.666563124,0.008065251,loss,ns,0.00000166,0.00000459,0.362026056,0.717579215,pos,ns,-0.00132387,0.001344761,-0.984465476,0.325654418,neg,ns,0.487243026,0.0000582,0.0000462,1.258399708,0.209194161,pos,ns,0.930960424,Zswim5,Zswim5_Exon,4,116986602,116986651,116986602,116986603,50,+,CGGGAGGAACTGGCTAGCTGTGCTCGCACACTGGCTCTACAGTGTGCTAT,"Exon (Zswim5-201/Zswim5, exon 14 of 14)",4,116877376,116989264,111889,1,Zswim5-201,109226,Urod-201;Urod-205;Urod-209;Urod-206;Urod-204;Zswim5-201,Urod;Urod;Urod;Urod;Urod;Zswim5,7762;5014;5235;7713;7706;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,74464,ENSMUSG00000033948,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16755,cg10492219,0.0000235,0.00000488,4.807208353,0.00000239,gain,ns,-0.000003,0.00000829,-0.361975464,0.717616983,neg,ns,0.002184515,0.002428432,0.899557804,0.369053844,pos,ns,0.432910266,-0.0000388,0.0000835,-0.464161064,0.642858138,neg,ns,0.113062129,Esrrb,Esrrb_fiveUTR,12,86421892,86421941,86421940,86421941,50,-,CTGGGAATGCTAAAACGGGACTGATGGACGTGTCCGAACTCTGCATCCCG,5' UTR,12,86361117,86521628,160512,1,Esrrb-204,60775,Esrrb-204;Esrrb-202;Esrrb-203;Esrrb-201,Esrrb;Esrrb;Esrrb;Esrrb,0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,19,26380,ENSMUSG00000021255,conserved gene but different region,12,86421660,86421941,282,*,282,38,0.709219858,1.11625,0.134751773,1.19E-34,CpGisland,TRUE,U3,Pr-B
16790,cg26514079,0.0000472,0.00000871,5.411475616,0.000000125,gain,yes,0.00000536,0.0000148,0.361818523,0.717734149,pos,ns,0.000930294,0.004337523,0.214475821,0.830317033,pos,ns,0.080756053,0.000207082,0.000149167,1.388257075,0.166055578,pos,ns,0.862160735,Lrba,Lrba_Exon,3,86532143,86532192,86532143,86532144,50,+,CGATTTGTGCGTAACCCTCTAGGATCGACACATCCTGAAGCGACACTAAA,"Exon (Lrba-202/Lrba, exon 38 of 51)",3,86224680,86746712,522033,1,Lrba-202,307463,Lrba-202;Lrba-204;Lrba-201;Lrba-208,Lrba;Lrba;Lrba;Lrba,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,17,45,80877,ENSMUSG00000028080,conserved gene but different region,3,86532037,86532200,164,*,164,13,0.506097561,1.239534884,0.079268293,6.06E-09,CpGisland,TRUE,U15,NS
19693,cg03485005,-0.00000509,0.00000195,-2.617676143,0.009287479,loss,ns,-0.0000012,0.0000033,-0.361802276,0.717746278,neg,ns,-0.001556196,0.000968131,-1.607423598,0.108979476,neg,ns,0.962655286,0.0000122,0.0000333,0.366883073,0.713956541,pos,ns,0.035234934,Stag1,Stag1_fiveUTR,9,100643624,100643673,100643672,100643673,50,-,GAAAATGCCACCAGATGGCGGGTTAGGATTGCAGCTCCGTTGAAGGCGCG,Promoter (<=1kb),9,100643636,100957399,313764,1,Stag1-216,0,Stag1-205;Stag1-213;Stag1-206;Stag1-210;Stag1-204;Stag1-212;Stag1-201;Stag1-208;Stag1-216;Stag1-203;Stag1-207,Stag1;Stag1;Stag1;Stag1;Stag1;Stag1;Stag1;Stag1;Stag1;Stag1;Stag1,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,6,15,20842,ENSMUSG00000037286,conserved gene and region,9,100642808,100644342,1535,*,1535,206,0.725732899,1.021439208,0.134201954,3.49E-185,CpGisland,TRUE,U1,Pr-A
22993,cg01519760,-0.000000836,0.0000015,-0.556792044,0.578071255,loss,ns,0.000000923,0.00000255,0.361800983,0.717747244,pos,ns,0.000669874,0.0007471,0.896632463,0.370610828,pos,ns,0.431081897,-0.0000302,0.0000257,-1.174581462,0.241063673,neg,ns,0.956585514,Gm13991,Gm13991_Intergenic_upstream,2,116586902,116586951,116586950,116586951,50,+,TCATTTTGAATCATGGCAGATGACAGAAACAAACGGCCTAATGAATCTCG,Distal Intergenic,2,116527843,116528490,648,2,Gm13991-201,-58412,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,20,433464,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20866,cg09595031,-0.000025,0.0000129,-1.936681451,0.053692819,loss,ns,0.00000792,0.0000219,0.361728554,0.717801319,pos,ns,-0.005387067,0.006412022,-0.840151006,0.401471219,neg,ns,0.396345583,-0.000175649,0.000220509,-0.796564123,0.426313829,neg,ns,0.838272906,Gm14855,Gm14855_Intergenic_upstream,X,105675335,105675384,105675383,105675384,50,+,CTCATGCAACCTTACAGTAATTTCATGACACTTTTACTATGAGGCAAGCG,Distal Intergenic,20,105688024,105688215,192,1,Gm14855-201,-12640,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,547182,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22372,cg14209399,-0.000028,0.00000859,-3.262921719,0.00122577,loss,ns,0.00000528,0.0000146,0.361726061,0.71780318,pos,ns,-0.009696959,0.004276617,-2.267437031,0.024051755,neg,ns,1.618853231,0.000178936,0.000147072,1.216648881,0.224663323,pos,ns,0.680275472,Atp2b2,Atp2b2_threeUTR,6,113748546,113748595,113748546,113748547,50,-,CGTCTCCAGGCTGTGGATGGGGCTCCCTGGACTTGAAGAGGTAGCTGATT,3' UTR,6,113743831,114042026,298196,2,Atp2b2-203,293431,Atp2b2-203;Atp2b2-201;Atp2b2-206;Atp2b2-208;Atp2b2-202,Atp2b2;Atp2b2;Atp2b2;Atp2b2;Atp2b2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,8,11941,ENSMUSG00000030302,conserved gene and region,6,113748431,113748547,117,*,117,10,0.700854701,0.75,0.085470086,0.000000285,CpGisland,TRUE,NA,NRS
2540,cg17591623,0.00000338,0.00000269,1.258937622,0.209000047,gain,ns,0.00000165,0.00000457,0.361543434,0.717939535,pos,ns,-0.001382487,0.001337771,-1.033426244,0.302209992,neg,ns,0.51969118,0.000106302,0.000046,2.310611997,0.02151044,pos,ns,0.876469887,Abcc5,Abcc5_Exon,16,20404559,20404608,20404607,20404608,50,-,AACTTACTGGTCCACTGAAGCCAGCCAGCTGCGTGATCATCAGGCACACG,"Exon (Abcc5-202/Abcc5, exon 5 of 30)",16,20331303,20426394,95092,2,Abcc5-202,21786,Abcc5-202;Abcc5-204;Abcc5-201;Abcc5-206;Abcc5-208;Abcc5-203;Abcc5-212,Abcc5;Abcc5;Abcc5;Abcc5;Abcc5;Abcc5;Abcc5,0;0;0;-4273;0;0;21745,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,6,27416,ENSMUSG00000022822,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3897,cg01819094,0.000062,0.0000111,5.589775259,4.99E-08,gain,yes,-0.00000681,0.0000188,-0.361357616,0.718078282,neg,ns,0.000401967,0.005520077,0.072819022,0.941997094,pos,ns,0.025950437,0.000201274,0.000189835,1.06025647,0.289853301,pos,ns,0.789051182,5730522E02Rik,5730522E02Rik_Intron,11,25698002,25698051,25698050,25698051,50,+,TATGCAGCAGCCAGCAGGGAGCCACCAGATAATTACACAGTATTTGTGCG,"Intron (5730522E02Rik-202/5730522E02Rik, intron 2 of 5)",11,25617668,26210569,592902,2,5730522E02Rik-202,512518,5730522E02Rik-202;5730522E02Rik-201;5730522E02Rik-208,5730522E02Rik;5730522E02Rik;5730522E02Rik,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,90,70626,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25542,cg25074583,0.000000203,0.00000879,0.023099951,0.981585407,gain,ns,-0.0000054,0.0000149,-0.361317603,0.71810816,neg,ns,-0.005347544,0.00437546,-1.222167236,0.222572853,neg,ns,0.652527808,0.0000731,0.000150472,0.48606905,0.627261617,pos,ns,0.855468108,Ebf3,Ebf3_Intron,7,137204562,137204611,137204610,137204611,50,+,ACAAAATCAAATATTTATGTTGTTTATTGAAACTGCTAGATTTCATCTCG,"Intron (Ebf3-204/Ebf3, intron 11 of 15)",7,137193673,137314445,120773,2,Ebf3-204,109834,Ebf3-204;Ebf3-201;Ebf3-202;Ebf3-203;Ebf3-208;Ebf3-205,Ebf3;Ebf3;Ebf3;Ebf3;Ebf3;Ebf3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,62,84,13593,ENSMUSG00000010476,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17600,cg05617117,0.00000106,0.00000378,0.281087814,0.778830565,gain,ns,0.00000232,0.00000642,0.361316967,0.718108635,pos,ns,-0.000666837,0.001880844,-0.35454133,0.723174292,neg,ns,0.140757021,-0.00000701,0.0000647,-0.108329205,0.913804638,neg,ns,0.920819998,Gm49613,Gm49613_Intergenic_downstream,16,91173368,91173417,91173416,91173417,50,-,ATACATAATGAAAAGCTGCATTTTCTGGGTACATGCACACATTTGGAGCG,Distal Intergenic,16,91174989,91175334,346,2,Gm49613-201,1966,Gm49613-201,Gm49613,1917,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12752,cg18331800,0.0000718,0.00000822,8.739013526,1.51E-16,gain,yes,0.00000504,0.000014,0.361259575,0.718151491,pos,ns,0.011104722,0.004089784,2.715233953,0.006994136,pos,ns,2.155265949,-0.000283418,0.000140647,-2.01509489,0.044757636,neg,ns,0.121956103,Phox2b,Phox2b_Promoter,5,67098392,67098441,67098440,67098441,50,+,GAGCTTTACTCTTTGTTATTTAATTATTTTCTAAGCTTTACGTCTCATCG,Promoter (<=1kb),5,67094399,67099301,4903,2,Phox2b-201,860,Phox2b-201;Phox2b-202,Phox2b;Phox2b,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,13,28,18935,ENSMUSG00000012520,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
7785,cg05965244,0.0000499,0.00000871,5.728983887,2.39E-08,gain,yes,0.00000535,0.0000148,0.361246216,0.718161467,pos,ns,0.008752121,0.004335941,2.018505527,0.04439946,pos,ns,1.352622313,-0.0000178,0.000149113,-0.119087579,0.905283105,neg,ns,0.640035384,Arhgap15,Arhgap15_Intron,2,44305441,44305490,44305489,44305490,50,-,TCGCTTGCTCTAATGCCAGTTCATAGTATACATACAAACATCTGCTTCCG,"Intron (Arhgap15-203/Arhgap15, intron 12 of 14)",2,43748824,44395953,647130,1,Arhgap15-203,556617,Arhgap15-203;Arhgap15-202;Arhgap15-201,Arhgap15;Arhgap15;Arhgap15,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,72,78,76117,ENSMUSG00000049744,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24881,cg20330710,0.0000186,0.00000316,5.880377377,1.06E-08,gain,yes,-0.00000194,0.00000537,-0.361243286,0.718163654,neg,ns,0.000910321,0.001573063,0.578693377,0.563216287,pos,ns,0.249324795,-0.0000206,0.0000541,-0.38149813,0.703095007,neg,ns,0.058460651,Pitx2,Pitx2_Intron,3,129208064,129208113,129208112,129208113,50,+,CTAATGGAACAATCTGATGTCTTCTTAATCCTATGTAAAAAGCTTTGTCG,"Intron (Pitx2-207/Pitx2, intron 3 of 4)",3,129199878,129219590,19713,1,Pitx2-207,8186,Pitx2-207;Pitx2-201;Pitx2-203;Pitx2-205;Pitx2-204,Pitx2;Pitx2;Pitx2;Pitx2;Pitx2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,24,18741,ENSMUSG00000028023,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
20485,cg17818266,-0.00000454,0.00000193,-2.350420429,0.019378686,loss,ns,-0.00000118,0.00000328,-0.36089725,0.718422068,neg,ns,-0.000471011,0.00096171,-0.489764414,0.624647016,neg,ns,0.204365331,-0.000024,0.0000331,-0.72599328,0.468390643,neg,ns,0.953722209,Ampd1,Ampd1_Exon,3,103079046,103079095,103079046,103079047,50,-,CGCAACTTTGCTGAAAAAGTGTTTGCCTCTGAAGTCAAAGATGAAGGAGG,"Exon (Ampd1-201/Ampd1, exon 3 of 16)",3,103074014,103099720,25707,1,Ampd1-201,5032,Ampd1-201;Ampd1-202;Ampd1-203,Ampd1;Ampd1;Ampd1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,229665,ENSMUSG00000070385,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16598,cg26491213,0.0000184,0.00000313,5.893220308,9.87E-09,gain,yes,0.00000192,0.00000532,0.360886417,0.718430159,pos,ns,0.003460175,0.001557841,2.221134017,0.027064149,pos,ns,1.567605617,0.0000832,0.0000536,1.552325185,0.121604717,pos,ns,0.066684001,Six3,Six3_Exon,17,85620760,85620809,85620760,85620761,50,+,CGAAACAAAATGTTTCAATGCTGCACTCACTGTGGATTTAGGGGAGATAT,"Exon (Gm28528-201/Gm28528-201, exon 1 of 2)",17,85613608,85625222,11615,1,Six3-202,7152,Six3-202;Six3-203;Six3-201,Six3;Six3;Six3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,24,20473,ENSMUSG00000038805,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3657,cg27248996,0.0000599,0.0000145,4.127269959,0.0000472,gain,ns,-0.0000089,0.0000247,-0.360831152,0.718471433,neg,ns,0.013947863,0.007226738,1.930035658,0.054514535,pos,ns,1.263487692,-0.000371334,0.000248527,-1.494138214,0.136156652,neg,ns,0.209237193,Erfl,Erfl_Promoter,7,24951289,24951338,24951289,24951290,50,+,CGGAGGCGACAGATTGAGCGATGAGACGCATTACGCACTTAATCCGCCTG,Promoter (6-7kb),7,24927445,24944494,17050,2,Erfl-201,-6795,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,29,36,,NA,mapped to different genes,7,24951274,24951467,194,*,194,18,0.567010309,1.164,0.092783505,1.92E-13,CpGisland,TRUE,U13,Hc-P
8717,cg05071129,-0.00000426,0.00000189,-2.257336288,0.024682749,loss,ns,-0.00000116,0.00000321,-0.360826301,0.718475056,neg,ns,0.001629526,0.000939535,1.734395146,0.083842033,pos,ns,1.0765382,-0.00000642,0.0000323,-0.198651722,0.842665409,neg,ns,0.953698937,Fbxw4,Fbxw4_Intron,19,45596412,45596461,45596460,45596461,50,+,AATTGCAATTAAATCAATTTTTGATGGGCTGCAAGTGGGCTCCCGAACCG,"Intron (Fbxw4-206/Fbxw4, intron 1 of 4)",19,45578254,45631138,52885,2,Fbxw4-206,34677,Fbxw4-206;Fbxw4-201;Fbxw4-204;Fbxw4-209;Fbxw4-203;Fbxw4-210;Fbxw4-205;Fbxw4-208,Fbxw4;Fbxw4;Fbxw4;Fbxw4;Fbxw4;Fbxw4;Fbxw4;Fbxw4,0;0;-2913;-2945;-4570;-4570;-3751;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,14,30838,ENSMUSG00000040913,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3980,cg26248766,0.00000377,0.00000216,1.746181802,0.081769922,gain,ns,-0.00000132,0.00000367,-0.360650944,0.718606025,neg,ns,-0.0000885,0.001075969,-0.082259213,0.934493675,neg,ns,0.029423634,0.0000274,0.000037,0.740810682,0.459368992,pos,ns,0.953155381,Nacc2,Nacc2_Intron,2,26108109,26108158,26108109,26108110,50,-,CGGTTCCCGAGGGAGCACTGAAGGTAAATATGTTAATTTGACTTCAATCA,"Intron (Nacc2-201/Nacc2, intron 1 of 5)",2,26055535,26122818,67284,2,Nacc2-201,14660,Nacc2-201;Nacc2-205;Nacc2-206;Nacc2-207,Nacc2;Nacc2;Nacc2;Nacc2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,4,67991,ENSMUSG00000026932,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10800,cg12338604,-0.0000433,0.00000694,-6.241172506,1.43E-09,loss,yes,0.00000425,0.0000118,0.360551092,0.718680605,pos,ns,-0.002723185,0.003452686,-0.788715113,0.430881281,neg,ns,0.365642373,0.0000157,0.000118738,0.132431622,0.89472882,pos,ns,0.881218206,Dbn1,Dbn1_threeUTR,13,55473762,55473811,55473762,55473763,50,+,CGTGCAAAATATCTGAAGCCCTGGACAGAGAATACAAAGTGATATTTTCC,3' UTR,13,55473429,55488111,14683,2,Dbn1-201,14300,Dbn1-201;Dbn1-203;Dbn1-202;Dbn1-206;Prr7-201,Dbn1;Dbn1;Dbn1;Dbn1;Prr7,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,4,56320,ENSMUSG00000034675,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
1854,cg21584784,-0.0000664,0.00000924,-7.190515746,4.86E-12,loss,yes,-0.00000566,0.0000157,-0.360539987,0.7186889,neg,ns,-0.007328252,0.004597502,-1.593963995,0.111963122,neg,ns,0.950925,-0.000308765,0.000158108,-1.952880343,0.05173336,neg,ns,0.77528537,Gli3,Gli3_fiveUTR,13,15613796,15613845,15613844,15613845,50,+,CCTGCCTTCCATCCTCCTGTACCAATTGATGCCAGACATCATGAGGGCCG,5' UTR,13,15463235,15715091,251857,1,Gli3-202,150561,Gli3-202;Gli3-204;Gli3-203;Gli3-201,Gli3;Gli3;Gli3;Gli3,0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,21,14634,ENSMUSG00000021318,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17885,cg08956303,-3.96E-08,0.0000049,-0.008090043,0.993550354,loss,ns,0.000003,0.00000832,0.360516257,0.718706625,pos,ns,0.002292344,0.002436535,0.940821213,0.347529022,pos,ns,0.459008922,-0.000129931,0.0000838,-1.550629356,0.122010805,neg,ns,0.903490167,Phf21a,Phf21a_Exon,2,92351703,92351752,92351703,92351704,50,-,CGTCCTCCAAAATACAATGCAGTGCTGGGGTTTGGAGCCCTTACCCCAAC,"Exon (Phf21a-201/Phf21a, exon 12 of 16)",2,92093117,92364666,271550,1,Phf21a-201,258586,Phf21a-201;Phf21a-202;Phf21a-204;Phf21a-209;Phf21a-208;Phf21a-207;Phf21a-206;Phf21a-205;Phf21a-203;Phf21a-215;Phf21a-218;Phf21a-217,Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,21,192285,ENSMUSG00000058318,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21906,cg24144787,-0.00000155,0.00000134,-1.153802072,0.249470087,loss,ns,0.000000823,0.00000228,0.360454643,0.718752647,pos,ns,-0.000631348,0.000668966,-0.943766255,0.346024055,neg,ns,0.460893708,0.0000411,0.000023,1.78782918,0.074780223,pos,ns,0.966854935,Ist1,Ist1_Exon,8,109682729,109682778,109682777,109682778,50,-,AGCAGCCAGATAGTCAGCAATCTCCTTCCTTGCTTTCTGGGCCAGTTCCG,"Exon (Ist1-201/Ist1, exon 3 of 10)",8,109671325,109693260,21936,2,Ist1-201,10482,Ist1-201;Ist1-203;Ist1-204,Ist1;Ist1;Ist1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,71955,ENSMUSG00000031729,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16169,cg04663744,0.0000693,0.0000192,3.604289728,0.000364555,gain,ns,0.0000118,0.0000327,0.36038752,0.718802785,pos,ns,0.049008338,0.009575852,5.117908891,0.000000543,pos,ns,6.265220832,-0.001260902,0.000329313,-3.828888273,0.000155758,neg,ns,0.580576768,Bnc2,Bnc2_Intron,4,84548696,84548745,84548696,84548697,50,+,CGATATAATTAACTAGAGGCTCAGCAACGGATCAATTACCAGACAAGCAA,"Intron (Bnc2-201/Bnc2, intron 2 of 7)",4,84275095,84675034,399940,2,Bnc2-201,126289,Bnc2-201;Bnc2-202;Bnc2-214;Bnc2-215;Bnc2-206;Bnc2-211;Bnc2-217;Bnc2-207;Bnc2-203;Bnc2-209;Bnc2-221;Bnc2-204;Bnc2-220;Bnc2-210,Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,91,242509,ENSMUSG00000028487,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3237,cg00016215,-0.00000238,0.00000716,-0.332624075,0.739642884,loss,ns,-0.00000438,0.0000122,-0.360333705,0.718842983,neg,ns,-0.007956326,0.003564385,-2.232173455,0.026317691,neg,ns,1.57975221,-0.0000435,0.000122579,-0.355036485,0.722803684,neg,ns,0.860778731,Kcnma1,Kcnma1_threeUTR,14,23311694,23311743,23311694,23311695,50,-,CGGTAAATTCCAAAACAAAGCATATTATATGTTTTCAGAGCTTTGCAGAA,3' UTR,14,23289431,23803304,513874,2,Kcnma1-207,491561,Kcnma1-207;Kcnma1-210;Kcnma1-205;Kcnma1-201;Kcnma1-208;Kcnma1-209;Kcnma1-212;Kcnma1-204;Kcnma1-202;Kcnma1-211;Kcnma1-229;Kcnma1-234;Kcnma1-223;Kcnma1-214;Kcnma1-216;Kcnma1-219;Kcnma1-220;Kcnma1-224;Kcnma1-233;Kcnma1-236;Kcnma1-237;Kcnma1-213;Kcnma1-228;Kcnma1-203;Kcnma1-206;Kcnma1-221;Kcnma1-225;Kcnma1-226;Kcnma1-230;Kcnma1-235,Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,13,41,16531,ENSMUSG00000063142,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27730,cg10973327,-0.00000614,0.00000164,-3.737935166,0.000220888,loss,ns,-0.00000101,0.00000279,-0.360288879,0.718876468,neg,ns,0.000182818,0.000818036,0.223483519,0.823306407,pos,ns,0.084438505,-0.0000373,0.0000281,-1.325639282,0.185935256,neg,ns,0.969032071,Cdc42bpa,Cdc42bpa_Exon,1,180094001,180094050,180094049,180094050,50,+,CACTGTCAGAGGAAACTGGCCATGCAGGAATTCATGGAGATCAATGAGCG,"Exon (Cdc42bpa-203/Cdc42bpa, exon 13 of 35)",1,179960472,180163156,202685,1,Cdc42bpa-203,133529,Cdc42bpa-203;Cdc42bpa-204;Cdc42bpa-208;Cdc42bpa-201;Cdc42bpa-202;Cdc42bpa-218;Cdc42bpa-210,Cdc42bpa;Cdc42bpa;Cdc42bpa;Cdc42bpa;Cdc42bpa;Cdc42bpa;Cdc42bpa,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,10,226751,ENSMUSG00000026490,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23729,cg25450705,-0.0000345,0.0000151,-2.283063247,0.023103274,loss,ns,-0.00000924,0.0000256,-0.360233215,0.718918049,neg,ns,-0.017731242,0.007512815,-2.360133057,0.018887613,neg,ns,1.723822929,0.00033405,0.000258365,1.292937117,0.19699555,pos,ns,0.189277106,Bahcc1,Bahcc1_Intron,11,120236268,120236317,120236316,120236317,50,-,TCTTGAGTTACAATCAATAAAATTACTCGCTTAATTAGCATGGTTATTCG,"Intron (Bahcc1-203/Bahcc1, intron 1 of 27)",11,120232947,120292282,59336,1,Bahcc1-203,3321,Bahcc1-203;Bahcc1-201;Bahcc1-204;Bahcc1-202,Bahcc1;Bahcc1;Bahcc1;Bahcc1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,11,268515,ENSMUSG00000039741,conserved gene and region,11,120236295,120236496,202,*,202,16,0.599009901,1.073754153,0.079207921,6.59E-11,CpGisland,TRUE,U2,Pr-W
730,cg09159668,-0.00000543,0.00000287,-1.890992701,0.059557563,loss,ns,-0.00000176,0.00000488,-0.36014989,0.718980295,neg,ns,0.001946139,0.001428394,1.362466907,0.1740396,pos,ns,0.759351924,-0.0000605,0.0000491,-1.231666663,0.219007109,neg,ns,0.937223463,Nipbl,Nipbl_Intron,15,8342787,8342836,8342787,8342788,50,+,CGAGGTATAGCAAGTCTAGTGCAAAGACAGGTGATCACAGTGTTGTAGAG,"Intron (Nipbl-201/Nipbl, intron 11 of 46)",15,8290617,8444463,153847,2,Nipbl-201,101627,Nipbl-201,Nipbl,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,36,71175,ENSMUSG00000022141,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6621,cg15283949,0.000000294,0.00000103,0.285569757,0.775398383,gain,ns,0.00000063,0.00000175,0.36014236,0.71898592,pos,ns,0.000469015,0.000512654,0.914876661,0.360967448,pos,ns,0.442531961,-0.0000094,0.0000176,-0.533211058,0.594269543,neg,ns,0.976695196,Dennd1a,Dennd1a_Intron,2,37832396,37832445,37832396,37832397,50,-,CGTACGCCCTTGTAATGATCAGCTCTGGTCGATGTGCTTACCGCAGCAGC,"Intron (Dennd1a-201/Dennd1a, intron 19 of 21)",2,37798991,38287375,488385,2,Dennd1a-201,454930,Dennd1a-201;Dennd1a-206;Dennd1a-207,Dennd1a;Dennd1a;Dennd1a,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,46,227801,ENSMUSG00000035392,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20929,cg26248706,-0.00000311,0.00000128,-2.431946946,0.01558389,loss,ns,0.000000783,0.00000217,0.360136045,0.718990637,pos,ns,0.000985767,0.000637088,1.547301268,0.122810854,pos,ns,0.910763249,-0.0000274,0.0000219,-1.25094933,0.211896245,neg,ns,0.965937261,Elp4,Elp4_Intron,2,105719908,105719957,105719908,105719909,50,+,CGGACTCTGGGTGAATGCTGGACTCACATCAATGCCTTATTGTGAGTGCT,"Intron (Elp4-202/Elp4, intron 9 of 9)",2,105701027,105904564,203538,2,Elp4-202,184607,Elp4-202,Elp4,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,16,77766,ENSMUSG00000027167,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11013,cg26432184,-0.0000131,0.00000785,-1.673424021,0.09525256,loss,ns,-0.0000048,0.0000133,-0.359934969,0.719140854,neg,ns,-0.006512525,0.003905484,-1.667533109,0.096418267,neg,ns,1.015840677,0.0000396,0.000134309,0.294790148,0.76835151,pos,ns,0.777857478,Gm13518,Gm13518_Intergenic_downstream,2,56257614,56257663,56257662,56257663,50,+,ACTCTTAGTTTGTTGGCTGCCAGAGCCCAATTTACAAAAGTGGGAGTGCG,Distal Intergenic,2,56039853,56040085,233,1,Gm13518-201,217761,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,37,37,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
369,cg15934249,-0.0000114,0.0000039,-2.923273957,0.003718692,loss,ns,0.00000239,0.00000663,0.359880781,0.719181337,pos,ns,0.001577951,0.00194254,0.812313275,0.417235239,pos,ns,0.379619019,-0.0000968,0.0000668,-1.448311043,0.148540737,neg,ns,0.947469487,Zfhx4,Zfhx4_Exon,3,5243232,5243281,5243280,5243281,50,-,TTTCTCCTTTATCATCCAGTGTGCTAAAATTTATTGAAAAGGGTACCTCG,"Exon (Zfhx4-203/Zfhx4, exon 2 of 11)",3,5218526,5413165,194640,1,Zfhx4-203,24706,Zfhx4-203;Zfhx4-202;Zfhx4-201;Zfhx4-204;Zfhx4-205,Zfhx4;Zfhx4;Zfhx4;Zfhx4;Zfhx4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,23,77,80892,ENSMUSG00000025255,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19411,cg15761219,-0.00000753,0.00000243,-3.102028431,0.002098841,loss,ns,0.00000148,0.00000413,0.359804896,0.719238032,pos,ns,-0.000405934,0.001208722,-0.335837094,0.737220899,neg,ns,0.132402362,-0.0000296,0.0000416,-0.711159618,0.477520074,neg,ns,0.051628903,Dusp6,Dusp6_Promoter,10,99263096,99263145,99263144,99263145,50,+,TGTGAATGACAAACTCATTAACAATTCATCAACACAACCTGTTCCAGCCG,Promoter (<=1kb),10,99263231,99267488,4258,1,Dusp6-201,-86,Dusp6-201;Dusp6-204;Dusp6-202;Dusp6-203,Dusp6;Dusp6;Dusp6;Dusp6,0;0;0;-2496,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,6,8,67603,ENSMUSG00000019960,conserved gene but different region,10,99263144,99263272,129,*,129,11,0.627906977,0.866300366,0.085271318,5.89E-08,CpGisland,TRUE,U1,Pr-A
3082,cg16966744,0.0000203,0.00000734,2.767202159,0.005993696,gain,ns,0.00000449,0.0000125,0.359596924,0.719393419,pos,ns,0.005640209,0.003655373,1.542991465,0.123853012,pos,ns,0.907093426,0.000108764,0.000125708,0.865213152,0.387590861,pos,ns,0.852660067,Lrmda,Lrmda_Intron,14,22591558,22591607,22591558,22591559,50,-,CGATAGCCCCTGTTGACAGTCTGAATAAGTTTAGTGCCCTTTTGTTGTAC,"Intron (Lrmda-201/Lrmda, intron 4 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,571846,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206;Lrmda-205;Lrmda-207,Lrmda;Lrmda;Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0;0;-4906,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3536,cg08454381,-0.0000102,0.0000041,-2.492519578,0.013205847,loss,ns,-0.0000025,0.00000696,-0.359538007,0.719437441,neg,ns,-0.008543068,0.002038258,-4.191358107,0.0000362,neg,ns,4.441164154,0.000120979,0.0000701,1.725922648,0.085357743,pos,ns,0.855332187,Pax8,Pax8_Exon,2,24443066,24443115,24443114,24443115,50,-,ACCTTGGGGGTGGCCACCTTGGGCTTGGAGCCCCCTATCACTCCAGGCCG,"Exon (Gm13415-203/Gm13415-203, exon 1 of 1)",2,24420560,24475599,55040,2,Pax8-201,32484,Pax8-201;Pax8-204;Pax8-208;Pax8-203;Pax8-207;Pax8-202,Pax8;Pax8;Pax8;Pax8;Pax8;Pax8,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,6,18510,ENSMUSG00000026976,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16333,cg15666977,-0.000035,0.0000121,-2.902879818,0.003962664,loss,ns,0.00000737,0.0000205,0.359514516,0.719454994,pos,ns,0.001265298,0.006007807,0.210609031,0.833330731,pos,ns,0.079182602,-0.000225573,0.000206608,-1.091792984,0.275771899,neg,ns,0.762057054,Gm26913,Gm26913_Intergenic_upstream,13,84753976,84754025,84753976,84753977,50,-,CGAAGAATTATGTCAAGAGCATTCAGCATTACTGCCACTAAAAAGAGAGG,Distal Intergenic,13,84690210,84690941,732,2,Gm26913-201,-63084,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,9,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
690,cg20168721,-0.000023,0.0000089,-2.58459236,0.010206307,loss,ns,0.00000544,0.0000151,0.35950565,0.719461618,pos,ns,-0.005821133,0.004430512,-1.31387342,0.189860256,neg,ns,0.721565939,-0.000114942,0.000152365,-0.754386306,0.45118996,neg,ns,0.783948013,Adam22,Adam22_Exon,5,8090215,8090264,8090215,8090216,50,-,CGAGGGAGTGCCCAGGCTCAGGTGCTTGGGGCTCCCTCCTGTAAAAACAC,Promoter (<=1kb),5,8087938,8090240,2303,2,Adam22-222,0,Adam22-202;Adam22-204;Adam22-206;Adam22-203;Adam22-207;Adam22-209;Adam22-218;Adam22-223;Adam22-208;Adam22-210;Adam22-211;Adam22-212;Adam22-213;Adam22-215;Adam22-216;Adam22-219;Adam22-220;Adam22-221;Adam22-222;Adam22-201;Adam22-224,Adam22;Adam22;Adam22;Adam22;Adam22;Adam22;Adam22;Adam22;Adam22;Adam22;Adam22;Adam22;Adam22;Adam22;Adam22;Adam22;Adam22;Adam22;Adam22;Adam22;Adam22,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,11496,ENSMUSG00000040537,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9593,cg21650422,-0.00000139,0.000000839,-1.659071649,0.098112679,loss,ns,-0.000000513,0.00000143,-0.359413384,0.719530561,neg,ns,0.000108995,0.00041778,0.260890355,0.794350287,pos,ns,0.099987943,-0.0000225,0.0000144,-1.568533346,0.117776851,neg,ns,0.014194678,Epc2,Epc2_Exon,2,49451841,49451890,49451841,49451842,50,-,CGCCGCCAAGCCGCTGCCTATCTACCGCGGCAAGGACATGCCTGATCTCA,Promoter (<=1kb),2,49451486,49551948,100463,1,Epc2-201,355,Epc2-201,Epc2,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,14,227867,ENSMUSG00000069495,conserved gene but different region,2,49451467,49451969,503,*,503,63,0.731610338,0.950850662,0.125248509,7.63E-55,CpGisland,TRUE,U1,Pr-A
13654,cg06207958,-0.00000252,0.0000118,-0.212616806,0.831765602,loss,ns,-0.00000723,0.0000201,-0.359412234,0.719531421,neg,ns,-0.000214885,0.005892869,-0.03646533,0.970934793,neg,ns,0.012809936,-0.000450557,0.000202655,-2.22327019,0.02691829,neg,ns,0.704824432,Gm9192,Gm9192_Intergenic_downstream,14,71733549,71733598,71733597,71733598,50,-,CAGAGGGACATTAATCTACCTGACCACATCAGAATCCTTAATTATTCGCG,Distal Intergenic,14,71819567,71820551,985,2,Gm9192-201,87002,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,3,668477,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9363,cg07868578,-0.0000018,0.00000272,-0.659272311,0.510210349,loss,ns,-0.00000166,0.00000463,-0.359331316,0.719591886,neg,ns,-0.001230652,0.001355368,-0.907983649,0.364592161,neg,ns,0.438192673,0.0000114,0.0000466,0.244956255,0.806652372,pos,ns,0.94919855,Tenm3,Tenm3_fiveUTR,8,48417036,48417085,48417084,48417085,50,+,GGACCCAGCTGTCCTGCAGCTGGACGGACTCGGGTGTGGTTTGCAGCTCG,5' UTR,8,48227682,48674690,447009,2,Tenm3-201,257605,Tenm3-201;Tenm3-206;Tenm3-204;Tenm3-208;Tenm3-203;Tenm3-202,Tenm3;Tenm3;Tenm3;Tenm3;Tenm3;Tenm3,0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,7,39,23965,ENSMUSG00000031561,conserved gene but different region,8,48417060,48417110,51,*,51,7,0.745098039,1.0625,0.137254902,0.00000149,CpGisland,TRUE,U15,NS
9761,cg16448606,-0.000203943,0.0000134,-15.22977574,1.72E-39,loss,yes,0.00000817,0.0000227,0.359176192,0.719707806,pos,ns,0.014743301,0.006664866,2.212092693,0.027689112,pos,ns,1.557690974,-0.001131652,0.000229204,-4.937311417,0.0000013,neg,yes,0.143293147,Trps1,Trps1_Intron,15,50698233,50698282,50698233,50698234,50,+,CGTGCTCAGAAGTGTTGAAAGAAAGGCCCATTCTCTGCCCAGGGAATTGC,"Intron (Trps1-202/Trps1, intron 4 of 5)",15,50654752,50889691,234940,2,Trps1-202,191409,Trps1-202;Trps1-206;Trps1-204;Trps1-205;Trps1-207;Trps1-201,Trps1;Trps1;Trps1;Trps1;Trps1;Trps1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,36,83925,ENSMUSG00000038679,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U5,En-Sd
26709,cg26530506,0.00000668,0.00000465,1.438665509,0.151254153,gain,ns,0.00000283,0.00000789,0.359165426,0.719715852,pos,ns,-0.001399708,0.002312068,-0.605392059,0.54536146,neg,ns,0.263315556,0.0000348,0.0000795,0.438206677,0.661541665,pos,ns,0.849766266,Snph,Snph_Exon,2,151594412,151594461,151594460,151594461,50,-,ACTTCTGCAGCCCCTTGTCCTTGTCAATCAGGTTGTTCTTGACAGTGTCG,"Exon (Snph-202/Snph, exon 6 of 6)",2,151590549,151632549,42001,2,Snph-202,38088,Sdcbp2-201;Snph-202;Snph-201;Snph-203;Snph-204;Snph-206,Sdcbp2;Snph;Snph;Snph;Snph;Snph,21790;0;0;0;0;38010,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,241727,ENSMUSG00000027457,conserved gene and region,2,151594460,151594619,160,*,160,10,0.5875,0.732600733,0.0625,0.00000493,CpGisland,TRUE,U15,NS
23165,cg10043113,0.00000359,0.0000037,0.971583811,0.332015107,gain,ns,0.00000226,0.00000628,0.359144911,0.719731182,pos,ns,0.00254503,0.00184014,1.383063523,0.167640709,pos,ns,0.775620511,-0.0000619,0.0000633,-0.978322089,0.328677893,neg,ns,0.936183666,Rnf220,Rnf220_Intron,4,117376314,117376363,117376362,117376363,50,+,GGAGCTAACATCAGGGCCTGTCAGGGGGTGATGTGTGGTACAGTTCAACG,"Intron (Rnf220-201/Rnf220, intron 2 of 14)",4,117271463,117497052,225590,2,Rnf220-201,120689,Rnf220-201;Rnf220-202;Rnf220-207,Rnf220;Rnf220;Rnf220,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4728,cg15046169,-0.0000267,0.00001,-2.672508592,0.007926932,loss,ns,0.0000061,0.000017,0.358952791,0.719874759,pos,ns,-0.003211289,0.004976441,-0.645298398,0.519211134,neg,ns,0.284656003,-0.0000784,0.000171139,-0.458143815,0.647170104,neg,ns,0.562145851,Mecom,Mecom_Intron,3,30322181,30322230,30322229,30322230,50,-,ATTTACTGTGTGAAATTGGCCTCATCTGTCTCAATGCTTGATGCAGATCG,"Intron (Mecom-212/Mecom, intron 1 of 15)",3,29951299,30509733,558435,2,Mecom-212,187503,Mecom-212;Mecom-213;Mecom-207;Mecom-208;Mecom-211;Mecom-209,Mecom;Mecom;Mecom;Mecom;Mecom;Mecom,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,80,14013,ENSMUSG00000027684,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27768,cg16281420,0.0000317,0.0000115,2.749291957,0.006322826,gain,ns,0.00000703,0.0000196,0.358945606,0.719880129,pos,ns,0.020592188,0.005737998,3.588741157,0.000386067,pos,ns,3.413337445,-0.000471797,0.000197329,-2.390913995,0.017402821,neg,ns,0.252584698,Tgfb2,Tgfb2_Intron,1,186682854,186682903,186682854,186682855,50,+,CGAGAGCAGGCTGGAAAAGCTCAGCATCTGTTGCTACTAAGAATAGGCTG,"Intron (Tgfb2-201/Tgfb2, intron 1 of 6)",1,186622792,186705989,83198,2,Tgfb2-201,23086,Tgfb2-201;Tgfb2-206,Tgfb2;Tgfb2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,4,21808,ENSMUSG00000039239,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4395,cg09801174,0.0000128,0.00000259,4.960181495,0.00000116,gain,yes,-0.00000158,0.0000044,-0.35877666,0.720006395,neg,ns,0.002791542,0.001287897,2.167519311,0.030956209,pos,ns,1.509252233,-0.0000555,0.0000443,-1.252346222,0.211387703,neg,ns,0.067199206,Fgf12,Fgf12_Promoter,16,28753184,28753233,28753184,28753185,50,-,CGTGGTGCTGCAGGTGTAGTGACAGATCATCCCACTTTGCTCTCTGGATG,Promoter (<=1kb),16,28162354,28753068,590715,2,Fgf12-205,-165,Fgf12-205,Fgf12,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,5,14167,ENSMUSG00000022523,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
20232,cg04104679,0.0000708,0.0000131,5.409061894,0.000000127,gain,yes,0.00000798,0.0000222,0.358763368,0.72001633,pos,ns,0.020125817,0.006513417,3.089901463,0.002183744,pos,ns,2.660798329,-0.000646399,0.000223996,-2.885761711,0.004178625,neg,ns,0.300684667,Mast4,Mast4_Exon,13,102958023,102958072,102958071,102958072,50,+,ACAGACAATACTTACTCCAAGGTCAGCCCCGGAATCTGTAGCCTTTCCCG,"Exon (Mast4-201/Mast4, exon 1 of 28)",13,102732486,103334192,601707,2,Mast4-205,376120,Mast4-205;Mast4-220;Mast4-207;Mast4-218;Mast4-201;Mast4-213;Mast4-204;Mast4-202,Mast4;Mast4;Mast4;Mast4;Mast4;Mast4;Mast4;Mast4,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,8,328329,ENSMUSG00000034751,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
19470,cg24249775,-0.000021,0.00000678,-3.096037821,0.002140394,loss,ns,0.00000413,0.0000115,0.358696291,0.720066465,pos,ns,0.004171885,0.00337605,1.235729581,0.217494688,pos,ns,0.662551345,-0.000105225,0.000116102,-0.906314832,0.365473139,neg,ns,0.587406542,Krt10,Krt10_Exon,11,99388872,99388921,99388872,99388873,50,-,CGAACTTTGTCCAAGTAGGAAGCCAGGCGGTCATTCAGATTCTGCATGGT,Promoter (<=1kb),11,99385254,99389364,4111,2,Krt10-201,443,Krt10-201;Krt10-202,Krt10;Krt10,0;-2775,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,16661,ENSMUSG00000019761,mapped to different genes,11,99388708,99389039,332,*,332,18,0.572289157,0.686817607,0.054216868,1.84E-09,CpGisland,TRUE,NA,NRS
23814,cg21682340,-0.0000271,0.000006,-4.509362017,0.00000923,loss,ns,0.00000366,0.0000102,0.358622292,0.720121774,pos,ns,0.002079288,0.002987466,0.696004015,0.486947788,pos,ns,0.312517603,-0.000198548,0.000102739,-1.932557714,0.054201464,neg,ns,0.915415453,Galnt2l,Galnt2l_Intron,8,120441121,120441170,120441121,120441122,50,-,CGGGCAATTGATTTAAATCATTTTATAGAGAACCTATGTAAAATAAAAAG,"Intron (Galnt2l-201/Galnt2l, intron 1 of 15)",8,119910841,124345722,4434882,1,Galnt2l-201,530280,Galnt2l-201;Gse1-206,Galnt2l;Gse1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,28,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
726,cg14590765,-0.0000211,0.00000633,-3.327204511,0.00098278,loss,ns,-0.00000386,0.0000108,-0.358589055,0.720146617,neg,ns,-0.003015967,0.003151809,-0.95690038,0.339363182,neg,ns,0.469335277,-0.000194852,0.00010839,-1.797683157,0.073200239,neg,ns,0.919036869,Tmem114,Tmem114_Intergenic_downstream,16,8322722,8322771,8322722,8322723,50,-,CGTCATTAAGCTGAAACAGAATTCCTTCAGGGAGAAATTATTTCTCGTTT,Distal Intergenic,16,8409275,8425136,15862,2,Tmem114-201,102414,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,74720,ENSMUSG00000022715,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17988,cg15825361,-0.000000101,0.000000244,-0.411837894,0.680742857,loss,ns,0.000000149,0.000000415,0.35858475,0.720149834,pos,ns,-0.000256336,0.000121658,-2.107022525,0.035918727,neg,ns,1.444679065,0.00000716,0.00000418,1.710207937,0.088227964,pos,ns,0.993735734,Sned1,Sned1_Exon,1,93259737,93259786,93259785,93259786,50,+,GGGTGTGCCCGGGCGCTGGGCGTTCAGAATCGATGATGCCCAGGTGCGCG,"Exon (Sned1-201/Sned1, exon 4 of 31)",1,93235841,93301065,65225,1,Sned1-201,23896,Sned1-201;Sned1-206,Sned1;Sned1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,208777,ENSMUSG00000047793,conserved gene and region,1,93259656,93259798,143,*,143,14,0.671328671,0.878455463,0.097902098,7.28E-11,CpGisland,TRUE,NA,NRS
2334,cg05098471,0.0000114,0.00000281,4.057293809,0.0000629,gain,ns,0.00000171,0.00000477,0.358536154,0.720186158,pos,ns,0.003098796,0.001397645,2.217155149,0.027337657,pos,ns,1.563238712,-0.000071,0.0000481,-1.476460311,0.140835431,neg,ns,0.032198291,Meis1,Meis1_Promoter,11,19019011,19019060,19019059,19019060,50,-,CACAATGCATTGGGCTGCAGCAAGTAGGCTCCTCGGCAGGGGTGGGTGCG,Promoter (<=1kb),11,18879817,19018985,139169,2,Meis1-206,-75,Meis1-206;Meis1-202;Meis1-209;Meis1-201;Meis1-208;Meis1-207;Meis1-204;Meis1-205,Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1,0;0;0;0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,8,88,17268,ENSMUSG00000020160,conserved gene but different region,11,19018885,19019116,232,*,232,18,0.590517241,0.911392405,0.077586207,4.67E-12,CpGisland,TRUE,U1,Pr-A
9626,cg14981172,0.000019,0.0000139,1.368798168,0.172053403,gain,ns,0.00000845,0.0000236,0.358468305,0.720236873,pos,ns,0.001228164,0.006908152,0.17778477,0.859008122,pos,ns,0.06600273,-0.000231605,0.000237571,-0.974888241,0.330375809,neg,ns,0.836900322,Grik2,Grik2_Exon,10,49573659,49573708,49573707,49573708,50,+,AGACTGACATAGAAGGAATCTTTGTTGTCTGACACCTGGTGCTTCCAGCG,"Exon (Grik2-207/Grik2, exon 4 of 17)",10,49094833,49788766,693934,2,Grik2-207,215058,Grik2-207;Grik2-202;Grik2-205;Grik2-204;Grik2-201;Grik2-210,Grik2;Grik2;Grik2;Grik2;Grik2;Grik2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,12,14806,ENSMUSG00000056073,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14316,cg03025825,-0.0000552,0.0000113,-4.868639032,0.00000179,loss,yes,0.0000069,0.0000193,0.358396218,0.720290758,pos,ns,-0.013894653,0.005639872,-2.463646951,0.014295904,neg,ns,1.84478839,0.0000976,0.000193955,0.503230809,0.615159371,pos,ns,0.760084825,Smg6,Smg6_Intron,11,75153045,75153094,75153045,75153046,50,-,CGCCGTGCACAGCTGCCAGGAATCTGACGGGTAAAATCTGGAAAAGTTGG,"Intron (Smg6-201/Smg6, intron 15 of 18)",11,74925823,75164448,238626,1,Smg6-201,227222,Smg6-201;Smg6-202,Smg6;Smg6,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,34,103677,ENSMUSG00000038290,conserved gene but different region,11,75152978,75153073,96,*,96,9,0.635416667,0.931034483,0.09375,0.000000648,CpGisland,TRUE,U5,En-Sd
21512,cg01626197,-0.00000115,0.00000121,-0.949354203,0.343180004,loss,ns,0.000000737,0.00000206,0.358295231,0.720366247,pos,ns,-0.000436148,0.000602925,-0.723386414,0.469987982,neg,ns,0.327913248,-0.0000319,0.0000207,-1.53912528,0.124793789,neg,ns,0.030592307,Gmppb,Gmppb_Exon,9,108049587,108049636,108049635,108049636,50,+,CACTGGTGGACTTCTGCAATAAGCCCATCTTGCTGCACCAAGTGGAGGCG,Promoter (<=1kb),9,108049242,108052801,3560,1,Gmppb-202,345,Amigo3-201;Gm20662-202;Gmppb-202;Gmppb-205;Gmppb-203;Gmppb-201;Gmppb-204;Ip6k1-201;Ip6k1-202;Ip6k1-210;Ip6k1-203;Ip6k1-206;Ip6k1-209;Ip6k1-207;Rnf123-207;Rnf123-214;Rnf123-201;Rnf123-218;Rnf123-210;Rnf123-205;Rnf123-203;Rnf123-208;Rnf123-206,Amigo3;Gm20662;Gmppb;Gmppb;Gmppb;Gmppb;Gmppb;Ip6k1;Ip6k1;Ip6k1;Ip6k1;Ip6k1;Ip6k1;Ip6k1;Rnf123;Rnf123;Rnf123;Rnf123;Rnf123;Rnf123;Rnf123;Rnf123;Rnf123,-3523;0;0;0;0;0;0;0;0;0;0;25335;0;4724;0;0;0;0;0;2594;0;0;3063,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,331026,ENSMUSG00000070284,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
12852,cg21699360,0.00000268,0.00000276,0.970387831,0.332609722,gain,ns,-0.00000168,0.0000047,-0.358101795,0.720510852,neg,ns,-0.000840545,0.001375707,-0.610991167,0.541653158,neg,ns,0.26627872,0.0000814,0.0000473,1.720257133,0.086383654,pos,ns,0.915906508,Rsrc1,Rsrc1_Intron,3,67341050,67341099,67341050,67341051,50,+,CGTATCTCTGATATTAGCCACAGTGACAAATGTGGTGTGCCCTGCGATGT,"Intron (Rsrc1-206/Rsrc1, intron 7 of 9)",3,66981390,67356559,375170,1,Rsrc1-206,359660,Rsrc1-206;Rsrc1-203;Rsrc1-202;Rsrc1-201;Rsrc1-209;Rsrc1-205,Rsrc1;Rsrc1;Rsrc1;Rsrc1;Rsrc1;Rsrc1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,37,66880,ENSMUSG00000034544,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2498,cg16717041,-0.0000733,0.0000166,-4.419604982,0.0000137,loss,ns,-0.0000101,0.0000282,-0.358088588,0.720520725,neg,ns,-0.014084147,0.008260231,-1.705054793,0.089186012,neg,ns,1.049703257,0.000125159,0.000284069,0.44059503,0.659813278,pos,ns,0.679943795,Anxa1,Anxa1_Exon,19,20006042,20006091,20006042,20006043,50,-,CGAAAGGAAAATCAGAAAGCCTGCAGTTGCCCATTAGTGAGTCAGTGACT,"Exon (Gm3728-201/Gm3728-201, exon 4 of 4)",19,20373556,20375587,2032,2,Anxa1-202,369545,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,8,16952,ENSMUSG00000024659,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10648,cg04704690,0.000000534,0.0000027,0.197456181,0.843599975,gain,ns,0.00000164,0.00000459,0.358034985,0.720560798,pos,ns,0.000780705,0.001345388,0.580282542,0.562145646,pos,ns,0.250151149,-0.0000555,0.0000463,-1.19956099,0.231225899,neg,ns,0.921241933,Smad9,Smad9_Exon,3,54794350,54794399,54794398,54794399,50,-,CAAGATCCCCAGCGGCTGCAGCCTCAAGGTCTTCAACAACCAGCTCTTCG,"Exon (Smad9-201/Smad9, exon 5 of 6)",3,54755582,54801257,45676,1,Smad9-201,38768,Smad9-201,Smad9,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,55994,ENSMUSG00000027796,mapped to different genes,3,54794248,54794472,225,*,225,17,0.608888889,0.816261204,0.075555556,3.17E-11,CpGisland,TRUE,NA,NRS
25097,cg08199997,0.00000111,0.00000567,0.196274988,0.844523541,gain,ns,0.00000345,0.00000963,0.357978709,0.720602871,pos,ns,-0.004199169,0.002822616,-1.487686772,0.137849972,neg,ns,0.860593317,0.000394009,0.0000971,4.059037694,0.0000624,pos,ns,0.838690201,Npnt,Npnt_fiveUTR,3,132909940,132909989,132909988,132909989,50,-,TAGCACTTGTAGCTGCCGTAAGTGTTCATGCACCTGTGCTTACAGGGCCG,5' UTR,3,132881745,132950291,68547,2,Npnt-202,40302,Npnt-202;Npnt-206;Npnt-201;Npnt-205;Npnt-203;Npnt-204;Npnt-207,Npnt;Npnt;Npnt;Npnt;Npnt;Npnt;Npnt,0;0;0;0;0;0;-3581,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,2,114249,ENSMUSG00000040998,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17022,cg05491758,-0.0000309,0.00000903,-3.424845531,0.000697985,loss,ns,0.00000549,0.0000153,0.357918337,0.720648007,pos,ns,0.001504122,0.00449589,0.334554792,0.73818719,pos,ns,0.131833495,-0.000154399,0.000154613,-0.998611823,0.318761609,neg,ns,0.839324569,Zfp423,Zfp423_Intron,8,87925637,87925686,87925685,87925686,50,+,CTAATTACCTGGCTGTCTTTTCCCTACAAGATCCCAATTTAAGAATCTCG,"Intron (Zfp423-202/Zfp423, intron 1 of 7)",8,87661810,87959595,297786,2,Zfp423-202,33909,Zfp423-202;Zfp423-207;Zfp423-205;Zfp423-204,Zfp423;Zfp423;Zfp423;Zfp423,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,42,53,94187,ENSMUSG00000045333,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15150,cg08327269,0.0000178,0.000003,5.930037532,8.08E-09,gain,yes,0.00000182,0.0000051,0.357840866,0.720705927,pos,ns,0.0050794,0.001493451,3.401115349,0.000759068,pos,ns,3.119719401,-0.0000997,0.0000514,-1.940673062,0.053204292,neg,ns,0.013663201,Cerkl,Cerkl_Promoter,2,79456933,79456982,79456933,79456934,50,+,CGCGGAGCGCTCCATTCCGGCCCCTTTGTGGCCAGAAGAAAGTGGCCCAT,Promoter (<=1kb),2,79338569,79456785,118217,2,Cerkl-210,-148,Cerkl-210;Neurod1-201,Cerkl;Neurod1,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,13,15,228094,ENSMUSG00000075256,mapped to different genes,2,79456843,79457022,180,*,180,14,0.622222222,0.830039526,0.077777778,1.72E-09,CpGisland,TRUE,NA,NRS
16337,cg02377948,0.000157379,0.00001,15.72194277,2.30E-41,gain,yes,0.00000608,0.000017,0.357557598,0.720917724,pos,ns,0.002664163,0.00498215,0.534741584,0.593211888,pos,ns,0.226790154,-0.00000843,0.000171336,-0.049213375,0.960780945,neg,ns,0.225556257,Rfx4,Rfx4_fiveUTR,10,84756071,84756120,84756071,84756072,50,-,CGGCCATTCATCAGGCCGGCTGGCCTATCAATGACATTGCTCCCATCGGG,Promoter (<=1kb),10,84756062,84906144,150083,1,Rfx4-202,9,Rfx4-202,Rfx4,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,7,13,71137,ENSMUSG00000020037,mapped to different genes,10,84756044,84756276,233,*,233,17,0.557939914,1.02510352,0.072961373,5.60E-11,CpGisland,TRUE,U13,Hc-P
247,cg09313626,-0.000035,0.0000104,-3.360096999,0.000876555,loss,ns,-0.00000632,0.0000177,-0.357547143,0.720925541,neg,ns,0.033326834,0.005177947,6.43630224,4.65E-10,pos,ns,9.332857093,-0.000837095,0.000178069,-4.700952535,0.0000039,neg,ns,0.462636031,Gm21992,Gm21992_Exon,19,4803875,4803924,4803923,4803924,50,+,GGACAGCCAGGCCAGGCCCCTTCTTCTGACCCTTGGTGGAGAGTTCCACG,"Exon (Rbm14-201/Rbm14, exon 2 of 3)",19,4742913,4811612,68700,2,Gm21992-203,7688,Gm21992-203;Gm21992-206;Gm21992-204;Gm21992-201;Gm21992-205;Gm21992-202;Rbm14-201;Rbm14-202;Rbm14-203,Gm21992;Gm21992;Gm21992;Gm21992;Gm21992;Gm21992;Rbm14;Rbm14;Rbm14,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,27,48,102902673,ENSMUSG00000096370,mapped to different genes,19,4803923,4804011,89,*,89,8,0.561797753,1.146537842,0.08988764,0.00000491,CpGisland,TRUE,U10,Tr-S
21490,cg19441820,-0.000000842,0.00000713,-0.11796991,0.906167899,loss,ns,0.00000433,0.0000121,0.357452731,0.720996138,pos,ns,-0.003026249,0.003550886,-0.852251762,0.394732302,neg,ns,0.403697333,-0.0000749,0.000122115,-0.61352059,0.539982073,neg,ns,0.64533389,Bcl11b,Bcl11b_Intron,12,107952425,107952474,107952473,107952474,50,-,TGGCCGTGAAAAGAATTCTAAATAAAACACAAACATGGAATTTGGCAACG,"Intron (Bcl11b-201/Bcl11b, intron 3 of 3)",12,107910403,108003602,93200,2,Bcl11b-201,51128,Bcl11b-201;Bcl11b-202;Bcl11b-203,Bcl11b;Bcl11b;Bcl11b,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,39,58208,ENSMUSG00000048251,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12023,cg14533258,-0.00000851,0.00000494,-1.722995364,0.085886573,loss,ns,0.000003,0.00000839,0.357436484,0.721008287,pos,ns,-0.004752932,0.002459366,-1.932584325,0.054198169,neg,ns,1.266015389,0.000242271,0.0000846,2.864487356,0.004461954,pos,ns,0.83880689,Hkdc1,Hkdc1_Exon,10,62385851,62385900,62385851,62385852,50,-,CGTGCTGTCCAGGCCCAGCTGCTGCAGAATCCTCCTGACCTGGAGAAGGG,"Exon (Hkdc1-201/Hkdc1, exon 17 of 18)",10,62383137,62422491,39355,2,Hkdc1-201,36591,Hkdc1-201,Hkdc1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,216019,ENSMUSG00000020080,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20590,cg22675852,0.0000214,0.00000297,7.219462964,4.05E-12,gain,yes,-0.0000018,0.00000505,-0.357404653,0.721032089,neg,ns,0.001166545,0.001478108,0.789215229,0.430589408,pos,ns,0.365936658,0.000181259,0.0000508,3.565845096,0.000419925,pos,ns,0.080961534,Wnt3,Wnt3_fiveUTR,11,103774166,103774215,103774166,103774167,50,+,CGAAAGTCATTTCCAATCTCAAGTGGACTTTGTTCCAACTATTGGGGGCG,Promoter (<=1kb),11,103774150,103817957,43808,1,Wnt3-201,16,Wnt3-201,Wnt3,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,9,22415,ENSMUSG00000000125,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
13605,cg19696052,0.0000493,0.00000383,12.85621055,1.31E-30,gain,yes,-0.00000233,0.00000651,-0.357404532,0.721032179,neg,ns,0.005134239,0.001907891,2.691054546,0.007509079,pos,ns,2.12441332,-0.00000406,0.0000656,-0.061829118,0.950738759,neg,ns,0.100570157,Dlx1,Dlx1_fiveUTR,2,71529983,71530032,71529983,71529984,50,-,CGCGAGAAGAGATGACCATGACCACCATGCCAGAAAGTCTCAACAGCCCC,5' UTR,2,71528113,71533980,5868,1,Dlx1-201,1870,Dlx1-201;Dlx1-202;Dlx1-205;Dlx1-204;Dlx1-203;Dlx1-206;Metap1d-201;Metap1d-205,Dlx1;Dlx1;Dlx1;Dlx1;Dlx1;Dlx1;Metap1d;Metap1d,0;0;0;0;0;-748;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,12,36,13390,ENSMUSG00000041911,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
19813,cg05606581,-0.000000302,0.000000337,-0.894476895,0.371760726,loss,ns,0.000000205,0.000000573,0.357385441,0.721046455,pos,ns,0.000381158,0.000167774,2.27185497,0.023780214,pos,ns,1.623784244,-0.0000117,0.00000577,-2.033323366,0.042871418,neg,ns,0.009050779,Vps25,Vps25_fiveUTR,11,101253759,101253808,101253807,101253808,50,+,CGATGAGTTTCGAGTGGCCGTGGCAGTATCGCTTCCCACCCTTCTTTACG,Promoter (<=1kb),11,101253764,101259210,5447,1,Vps25-206,0,Ramp2-203;Vps25-201;Vps25-202;Vps25-203;Vps25-207;Vps25-204;Vps25-205;Vps25-206,Ramp2;Vps25;Vps25;Vps25;Vps25;Vps25;Vps25;Vps25,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,TRUE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,1,28084,ENSMUSG00000078656,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
21109,cg16670979,0.00000704,0.0000021,3.359049565,0.000879766,gain,ns,-0.00000127,0.00000356,-0.357356643,0.72106799,neg,ns,0.002249526,0.001043518,2.155713442,0.031875345,pos,ns,1.496545102,-0.0000419,0.0000359,-1.168657472,0.243439565,neg,ns,0.011557322,Ppfia2,Ppfia2_Promoter,10,106469413,106469462,106469413,106469414,50,-,CGCGTGTGCGTGAGGAGGAGAGCAAAGACGTGATTACTTCAGAATTTATT,Promoter (<=1kb),10,106470339,106932492,462154,1,Ppfia2-201,-926,Ppfia2-201;Ppfia2-202;Ppfia2-203,Ppfia2;Ppfia2;Ppfia2,0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,9,327814,ENSMUSG00000053825,conserved gene but different region,10,106469372,106469489,118,*,118,9,0.525423729,1.299877601,0.076271186,0.00000366,CpGisland,TRUE,U13,Hc-P
12930,cg18661311,-0.000002,0.00000145,-1.378222272,0.169128574,loss,ns,0.000000879,0.00000246,0.35732195,0.721093933,pos,ns,0.001625864,0.000721034,2.254906864,0.024836648,pos,ns,1.604907021,-0.0000767,0.0000248,-3.092311559,0.002166622,neg,ns,0.959471286,Rnmt,Rnmt_Exon,18,68313992,68314041,68313992,68313993,50,+,CGCCTTGAAGCTTCAGAAACAGAATCATTTGGAAATGAAATATATACTGT,"Exon (Rnmt-201/Rnmt, exon 7 of 11)",18,68300355,68324852,24498,1,Rnmt-201,13637,Rnmt-201;Rnmt-204;Rnmt-208;Rnmt-202;Rnmt-205;Rnmt-206;Rnmt-207,Rnmt;Rnmt;Rnmt;Rnmt;Rnmt;Rnmt;Rnmt,0;13600;0;0;13570;-3450;-4956,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,67897,ENSMUSG00000009535,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5285,cg07859319,-0.0000514,0.00000954,-5.391831395,0.000000139,loss,yes,-0.00000579,0.0000162,-0.357231407,0.721161641,neg,ns,-0.011449079,0.004748911,-2.410884895,0.016495398,neg,ns,1.782637188,0.0000421,0.000163315,0.257892027,0.796661356,pos,ns,0.833751897,Ranbp17,Ranbp17_Intron,11,33301204,33301253,33301204,33301205,50,+,CGTTGCTATTGATCTCAGTAGCTGTTGCCTACACAGCATTACTCTAGATG,"Intron (Ranbp17-202/Ranbp17, intron 19 of 27)",11,33211795,33513746,301952,2,Ranbp17-202,212493,Ranbp17-202;Ranbp17-206;Ranbp17-203;Ranbp17-205,Ranbp17;Ranbp17;Ranbp17;Ranbp17,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,31,66011,ENSMUSG00000040594,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6039,cg04671080,0.0000528,0.00000958,5.506134684,7.71E-08,gain,yes,-0.00000582,0.0000163,-0.357223929,0.721167233,neg,ns,0.009082239,0.004769658,1.904169748,0.057813719,pos,ns,1.237969091,-0.00010689,0.000164028,-0.651657397,0.515105028,neg,ns,0.084246608,Cxxc5,Cxxc5_Intergenic_downstream,18,35887843,35887892,35887891,35887892,50,-,TTATCTGATCTGCGGCTAATTGAAACTCCCTGCTCGCGAAGGTCAGCTCG,Distal Intergenic,18,35854738,35858619,3882,1,Cxxc5-205,33154,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,49,67393,ENSMUSG00000046668,conserved gene but different region,18,35887877,35888084,208,*,208,19,0.721153846,0.712842713,0.091346154,4.89E-14,CpGisland,TRUE,U3,Pr-B
3718,cg12166181,0.000028,0.0000108,2.583105777,0.01024944,gain,ns,-0.00000657,0.0000184,-0.356946086,0.72137502,neg,ns,0.010428159,0.005394439,1.933131573,0.05413044,pos,ns,1.266558445,-0.000110904,0.000185514,-0.597820097,0.550396443,neg,ns,0.664872159,Pou2f2,Pou2f2_Intron,7,25134842,25134891,25134842,25134843,50,-,CGGATCGATACGTTTGACTCCCGACAAGACAATAATCGCTTGTACGCGGC,"Intron (Pou2f2-208/Pou2f2, intron 2 of 4)",7,25120618,25179726,59109,2,Pou2f2-208,44835,Pou2f2-203;Pou2f2-209;Pou2f2-201;Pou2f2-206;Pou2f2-204;Pou2f2-205;Pou2f2-202;Pou2f2-210;Pou2f2-208,Pou2f2;Pou2f2;Pou2f2;Pou2f2;Pou2f2;Pou2f2;Pou2f2;Pou2f2;Pou2f2,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,29,18987,ENSMUSG00000008496,mapped to different genes,7,25134752,25134975,224,*,224,23,0.629464286,1.037872683,0.102678571,4.08E-18,CpGisland,TRUE,U13,Hc-P
18922,cg17112497,-0.00000166,0.00000236,-0.704704449,0.481523272,loss,ns,0.00000143,0.000004,0.356909643,0.721402275,pos,ns,-0.003231808,0.001172632,-2.756028053,0.006197168,neg,ns,2.207806737,0.000104679,0.0000403,2.595770425,0.009887146,pos,ns,0.966587084,Mitf,Mitf_Exon,6,97941114,97941163,97941114,97941115,50,-,CGCATCTTGCTACGCCAGCAACTCATGCGTGAGCAGATGCAGGAGCAGGA,"Exon (Mitf-207/Mitf, exon 2 of 10)",6,97807052,98018593,211542,1,Mitf-207,134062,Mitf-207;Mitf-206;Mitf-202;Mitf-203;Mitf-204,Mitf;Mitf;Mitf;Mitf;Mitf,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,16,17342,ENSMUSG00000035158,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10184,cg23751538,0.0000135,0.00000476,2.838463952,0.004832266,gain,ns,0.00000289,0.00000808,0.356904175,0.721406365,pos,ns,0.004631477,0.00236853,1.955422812,0.051431343,pos,ns,1.288772131,0.000114194,0.0000815,1.401947248,0.161931486,pos,ns,0.062596314,Hoxa7,Hoxa7_fiveUTR,6,52217381,52217430,52217381,52217382,50,+,CGTTCACATAATACGAAGAACTCATAATTTTGACCTGTGATTTGTTGTCC,5' UTR,6,52214491,52220393,5903,2,Hoxa7-205,2963,Gm28308-201;Hoxa3-201;Hoxa3-203;Hoxa7-205;Hoxa7-201;Hoxa7-202;Hoxa7-204;Hoxa7-203,Gm28308;Hoxa3;Hoxa3;Hoxa7;Hoxa7;Hoxa7;Hoxa7;Hoxa7,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,9,10,15404,ENSMUSG00000038236,conserved gene but different region,6,52217250,52217463,214,*,214,20,0.546728972,1.271538919,0.093457944,5.89E-15,CpGisland,TRUE,U3,Pr-B
17176,cg05213609,0.000108768,0.0000131,8.302932412,3.18E-15,gain,yes,-0.00000794,0.0000223,-0.356894948,0.721413266,neg,ns,0.016337936,0.006519967,2.505831221,0.012728633,pos,ns,1.895218246,-0.000626086,0.000224221,-2.792270654,0.005559052,neg,ns,0.091890448,Sall1,Sall1_Intron,8,89042631,89042680,89042679,89042680,50,+,AGGGGCTCTTTGAAAGGCGATTGGCACCGGGCCAGCGCTATTCAAACCCG,"Intron (Sall1-201/Sall1, intron 1 of 3)",8,89027235,89044162,16928,2,Sall1-201,1482,Sall1-201,Sall1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,15,58198,ENSMUSG00000031665,conserved gene but different region,8,89042618,89043122,505,*,505,61,0.722772277,0.926076239,0.120792079,5.05E-52,CpGisland,TRUE,U1,Pr-A
23615,cg15334728,-0.00000862,0.00000197,-4.373324702,0.0000167,loss,ns,0.0000012,0.00000335,0.356872179,0.721430295,pos,ns,0.001171603,0.000981095,1.194179562,0.233320686,pos,ns,0.632046755,-0.000115022,0.0000337,-3.409097276,0.000737986,neg,ns,0.062339387,Dll4,Dll4_Intron,2,119327287,119327336,119327287,119327288,50,-,CGCTGCCTGGACTCAGAGCACAATTGCGTTTCCTGCGGGTTATTTTTGGC,"Intron (Dll4-201/Dll4, intron 3 of 10)",2,119325784,119335962,10179,1,Dll4-201,1503,Dll4-201;Dll4-202,Dll4;Dll4,0;-1202,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,20,54485,ENSMUSG00000027314,conserved gene but different region,2,119327100,119327430,331,*,331,31,0.637462236,0.947985957,0.093655589,5.80E-23,CpGisland,TRUE,U3,Pr-B
25533,cg26077613,0.00000561,0.00000617,0.90894181,0.364086946,gain,ns,-0.00000374,0.0000105,-0.356835081,0.721458041,neg,ns,-0.009456128,0.003072384,-3.077781672,0.002271747,neg,ns,2.643639974,0.000296246,0.000105659,2.803791608,0.005369054,pos,ns,0.872257455,Ebf3,Ebf3_Exon,7,137199062,137199111,137199062,137199063,50,+,CGTGATGACGTGTGACAAAAACAGACACTTACTGCCGTAGGGAGAGTTAG,"Exon (Ebf3-204/Ebf3, exon 14 of 16)",7,137193673,137314445,120773,2,Ebf3-204,115334,Ebf3-204;Ebf3-201;Ebf3-202;Ebf3-203;Ebf3-208;Ebf3-205,Ebf3;Ebf3;Ebf3;Ebf3;Ebf3;Ebf3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,84,13593,ENSMUSG00000010476,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19416,cg25929608,0.00000261,0.00000297,0.88122305,0.378879817,gain,ns,0.0000018,0.00000504,0.356811648,0.721475567,pos,ns,0.003287674,0.001476142,2.227207472,0.026651237,pos,ns,1.574282628,-0.000136695,0.0000508,-2.692738499,0.007472139,neg,ns,0.919092748,Gm12689,Gm12689_Intergenic_upstream,4,99273932,99273981,99273980,99273981,50,-,ATGATATAAGTTGACAAATGGCTTAAGCAATTTCCATAATTTTCTACACG,Distal Intergenic,4,99295900,99297258,1359,1,Gm12689-201,-21968,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,26,100137011,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21505,cg26040252,-0.000000892,0.00000273,-0.326359024,0.744372952,loss,ns,0.00000166,0.00000464,0.356722197,0.721542471,pos,ns,-0.001030508,0.001359988,-0.757733247,0.449186295,neg,ns,0.347573503,-0.000157061,0.0000468,-3.358157331,0.000882509,neg,ns,0.935650532,Prkca,Prkca_Exon,11,108013020,108013069,108013020,108013021,50,+,CGATCCCAGTCCCAGATTTCTACAGACAGTCGTCGGTCTTTGTCTGAAGG,"Exon (Prkca-201/Prkca, exon 7 of 17)",11,107933387,108343928,410542,2,Prkca-201,330859,Prkca-201;Prkca-204,Prkca;Prkca,0;-215,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,18750,ENSMUSG00000050965,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2852,cg06323129,0.000190028,0.0000173,11.01100013,5.10E-24,gain,yes,-0.0000105,0.0000293,-0.356574255,0.721653128,neg,ns,0.031095907,0.008589472,3.620235026,0.000343666,pos,ns,3.463862824,-0.000703377,0.000295391,-2.381169967,0.017861319,neg,ns,0.471796462,Zfp503,Zfp503_Promoter,14,21991252,21991301,21991300,21991301,50,+,ACTATTCACTGTCGAGATGGCTAATCAGTATTGAGGCCGGAGGGCAGGCG,Promoter (1-2kb),14,21983959,21989601,5643,2,Zfp503-201,-1651,Zfp503-201,Zfp503,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,18,27,218820,ENSMUSG00000039081,mapped to different genes,14,21991208,21991513,306,*,306,17,0.513071895,0.84502924,0.055555556,3.96E-09,CpGisland,TRUE,NA,NRS
17933,cg22027712,-0.00000293,0.00000199,-1.475661309,0.141049799,loss,ns,0.0000012,0.00000337,0.356420663,0.721768016,pos,ns,0.002865136,0.000988498,2.898475505,0.004017234,pos,ns,2.39607292,-0.00010839,0.000034,-3.188480302,0.001576336,neg,ns,0.941212916,Pcf11,Pcf11_Exon,7,92659838,92659887,92659886,92659887,50,-,AACAAGGAAGTCATCCTGTGTAATTTCACCAGATGCTAAACGTTCACTCG,"Exon (Pcf11-201/Pcf11, exon 7 of 16)",7,92643543,92669934,26392,2,Pcf11-201,10047,Pcf11-201;Pcf11-203,Pcf11;Pcf11,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,8,74737,ENSMUSG00000041328,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23706,cg03668409,-0.00000294,0.0000014,-2.099011668,0.03662441,loss,ns,-0.000000849,0.00000238,-0.356379544,0.721798776,neg,ns,0.000772526,0.00069794,1.106865432,0.269210265,pos,ns,0.569908385,-0.000018,0.000024,-0.748618149,0.454654996,neg,ns,0.959775557,Wnk1,Wnk1_Exon,6,119970916,119970965,119970964,119970965,50,-,GCTTCATTATCTTTGTATTTTCCCTTTAATTTCTTAATATCTTCAATACG,"Exon (Wnk1-202/Wnk1, exon 6 of 28)",6,119923969,120038672,114704,2,Wnk1-202,67707,Wnk1-202;Wnk1-203;Wnk1-223;Wnk1-204;Wnk1-224;Wnk1-221;Wnk1-214;Wnk1-211;Wnk1-206;Wnk1-217;Wnk1-201;Wnk1-205,Wnk1;Wnk1;Wnk1;Wnk1;Wnk1;Wnk1;Wnk1;Wnk1;Wnk1;Wnk1;Wnk1;Wnk1,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,9,232341,ENSMUSG00000045962,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1642,cg01632700,-0.00000301,0.000000967,-3.1143935,0.002015412,loss,ns,-0.000000586,0.00000164,-0.356350093,0.721820806,neg,ns,-0.000478274,0.000481445,-0.993413623,0.321283196,neg,ns,0.493111989,0.000000864,0.0000166,0.052211563,0.958393748,pos,ns,0.030258516,Hivep2,Hivep2_Intron,10,13967519,13967568,13967567,13967568,50,+,TTCCCTGAAGTGGGTGGAACGTTGGCCCGTTCCGGGAATGTTCCATGACG,"Intron (Hivep2-204/Hivep2, intron 1 of 12)",10,13966075,14150589,184515,1,Hivep2-204,1444,Hivep2-204;Hivep2-201;Hivep2-205;Hivep2-203;Hivep2-202;Hivep2-206,Hivep2;Hivep2;Hivep2;Hivep2;Hivep2;Hivep2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,9,15273,ENSMUSG00000015501,conserved gene but different region,10,13966596,13967658,1063,*,1063,102,0.67826905,0.874727722,0.095954845,2.58E-75,CpGisland,TRUE,U1,Pr-A
328,cg20529220,-0.00000348,0.00000547,-0.636554267,0.52488496,loss,ns,0.00000331,0.0000093,0.356142245,0.721976293,pos,ns,-0.003315212,0.002724344,-1.216884458,0.224573795,neg,ns,0.648640922,0.0000477,0.0000937,0.5089437,0.611153728,pos,ns,0.748585463,Klhl29,Klhl29_Intron,12,5124542,5124591,5124542,5124543,50,-,CGAATGGGGATTTCTGCATATTTATACTAATGTCTGTGTTTAAAGCTTAT,"Intron (Klhl29-201/Klhl29, intron 5 of 13)",12,5077472,5375682,298211,2,Klhl29-201,251091,Klhl29-201;Klhl29-202,Klhl29;Klhl29,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,23,208439,ENSMUSG00000020627,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20231,cg22110794,0.0000455,0.0000132,3.443971551,0.000652127,gain,ns,0.00000799,0.0000224,0.356121703,0.721991661,pos,ns,0.018478978,0.006577042,2.809618237,0.005275225,pos,ns,2.277759015,-0.000687627,0.000226184,-3.040120877,0.002566462,neg,ns,0.266371194,Mast4,Mast4_Exon,13,102958004,102958053,102958052,102958053,50,-,AAGCATTAAAATATTAAAGACAGACAATACTTACTCCAAGGTCAGCCCCG,"Exon (Mast4-201/Mast4, exon 1 of 28)",13,102732486,103334192,601707,2,Mast4-205,376139,Mast4-205;Mast4-220;Mast4-207;Mast4-218;Mast4-201;Mast4-213;Mast4-204;Mast4-202,Mast4;Mast4;Mast4;Mast4;Mast4;Mast4;Mast4;Mast4,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,8,328329,ENSMUSG00000034751,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
5779,cg11810575,-0.0000297,0.00000946,-3.144139706,0.00182708,loss,ns,0.00000572,0.0000161,0.356100475,0.722007542,pos,ns,-0.010486175,0.004706899,-2.227830824,0.026609169,neg,ns,1.574968695,0.000163651,0.00016187,1.01100369,0.312803114,pos,ns,0.672331489,Sox2,Sox2_Intron,3,34705584,34705633,34705584,34705585,50,-,CGGAGCAATGTGGTGATTTATTCTGAAGCCTGTAAGAAGTCATGCAGCTG,"Intron (Gm3143-201/Gm3143-201, intron 2 of 4)",3,34650405,34652461,2057,1,Sox2-201,55228,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,34,62,20674,ENSMUSG00000074637,mapped to different genes,3,34705563,34705682,120,*,120,10,0.541666667,1.268498943,0.083333333,0.000000362,CpGisland,TRUE,U15,NS
23358,cg14518260,-0.000000213,0.00000903,-0.023571387,0.981209661,loss,ns,-0.00000547,0.0000153,-0.356093106,0.722013055,neg,ns,-0.006961273,0.004496201,-1.548256453,0.122580814,neg,ns,0.911577499,-0.000228497,0.000154624,-1.477760878,0.140487033,neg,ns,0.749919854,Ret,Ret_Exon,6,118153997,118154046,118153997,118153998,50,+,CGGGTCTGACATGCCTAAAAATGAAAACAGATCATTTGTTCTGCACTGAA,"Exon (Ret-201/Ret, exon 20 of 20)",6,118151745,118197133,45389,2,Ret-201,43087,Ret-201;Ret-202,Ret;Ret,0;43672,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,3,19713,ENSMUSG00000030110,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15439,cg19497322,-0.00000112,0.00000142,-0.787457079,0.431615992,loss,ns,-0.000000859,0.00000241,-0.355949867,0.722120217,neg,ns,-0.000837338,0.000707308,-1.183837891,0.237384194,neg,ns,0.624548201,0.000027,0.0000243,1.108141518,0.26865972,pos,ns,0.965380872,Tnrc6b,Tnrc6b_Exon,15,80890237,80890286,80890237,80890238,50,+,CGGCACAGGGCTCAACCCCCAAAACTTCGCTGCTAGACAAGTAAGGAGGC,"Exon (Tnrc6b-205/Tnrc6b, exon 2 of 3)",15,80711313,80941085,229773,1,Tnrc6b-201,178924,Tnrc6b-201;Tnrc6b-207;Tnrc6b-208;Tnrc6b-205,Tnrc6b;Tnrc6b;Tnrc6b;Tnrc6b,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,20,24,213988,ENSMUSG00000047888,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21567,cg08789153,0.00000672,0.00000129,5.201728192,0.00000036,gain,yes,-0.000000781,0.00000219,-0.355859895,0.722187532,neg,ns,0.002057225,0.000642678,3.201018071,0.001511441,pos,ns,2.820608761,-0.0000631,0.0000221,-2.852902227,0.004623497,neg,ns,0.035835863,Gm42517,Gm42517_Exon,5,108366985,108367034,108366985,108366986,50,-,CGACTTGTAGTTCTTGACGAGCAGGAGGCTGAGCAGGCCCAGCAGGCACT,Promoter (<=1kb),5,108366073,108367922,1850,2,Gm42517-201,888,Gm42517-201,Gm42517,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,,NA,mapped to different genes,5,108366463,108366986,524,*,524,57,0.702290076,0.882206994,0.108778626,9.52E-46,CpGisland,TRUE,U3,Pr-B
16118,cg01097631,0.0000371,0.0000121,3.061778602,0.002392951,gain,ns,0.00000733,0.0000206,0.355850848,0.722194301,pos,ns,0.008387427,0.006033655,1.390107153,0.165493657,pos,ns,0.781218646,-0.000357349,0.000207497,-1.722187341,0.086033014,neg,ns,0.665077245,Gm26927,Gm26927_Intergenic_upstream,13,84449040,84449089,84449040,84449041,50,+,CGGAGTCCCATTCACTGGTTTGTTTAACCTCAAAGTGGGAAAGTAACTAA,Distal Intergenic,13,84339149,84340113,965,2,Gm26927-201,-108927,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,3,102631850,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27933,cg05485821,-0.0000572,0.0000101,-5.675934853,3.17E-08,loss,yes,-0.00000609,0.0000171,-0.3558484,0.722196132,neg,ns,-0.006738884,0.005013791,-1.34406963,0.179908681,neg,ns,0.74494788,0.00000695,0.000172424,0.040315558,0.967867502,pos,ns,0.873820955,Rps6kc1,Rps6kc1_Intergenic_downstream,1,190654308,190654357,190654356,190654357,50,-,AGCTTCCTTCTTTGTAAGCAGCTAATGTGTGAAGCAAAGTGGTATTTTCG,Distal Intergenic,1,190808888,190810463,1576,2,Rps6kc1-207,156155,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,14,29,320119,ENSMUSG00000089872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25192,cg21283418,-0.00000402,0.0000029,-1.386888724,0.166472111,loss,ns,-0.00000175,0.00000493,-0.355793021,0.722237567,neg,ns,0.00025946,0.001443069,0.17979758,0.857428952,pos,ns,0.066801856,-0.000131102,0.0000496,-2.641743656,0.00866641,neg,ns,0.936718087,Gm17979,Gm17979_Intergenic_downstream,5,133662970,133663019,133663018,133663019,50,+,ATTTGTCATTCCTTAAAGTCATGCATATTACATTATCCTAATAATTTACG,Distal Intergenic,5,133519757,133520722,966,1,Gm17979-201,143213,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,100416223,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13545,cg10935025,-0.00000328,0.00000169,-1.941940798,0.053049919,loss,ns,0.00000102,0.00000287,0.355697631,0.722308938,pos,ns,0.000975692,0.000841734,1.159145363,0.247289019,pos,ns,0.606795168,-0.0000189,0.0000289,-0.652279953,0.514703947,neg,ns,0.953688825,Dync1i2,Dync1i2_Exon,2,71233652,71233701,71233700,71233701,50,+,GCTGCATTGGGATACAGATCCATCAGTTCTTCAGCTTCACTCAGATTCCG,"Exon (Dync1i2-207/Dync1i2, exon 5 of 17)",2,71211706,71263298,51593,1,Dync1i2-207,21946,Dync1i2-207;Dync1i2-205;Dync1i2-206;Dync1i2-204;Dync1i2-211;Dync1i2-201;Dync1i2-208;Dync1i2-202;Dync1i2-203;Dync1i2-212;Dync1i2-209,Dync1i2;Dync1i2;Dync1i2;Dync1i2;Dync1i2;Dync1i2;Dync1i2;Dync1i2;Dync1i2;Dync1i2;Dync1i2,0;0;0;0;0;0;0;0;0;21648;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,6,13427,ENSMUSG00000027012,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14617,cg11011976,0.0000036,0.00000794,0.453889182,0.650226187,gain,ns,0.0000048,0.0000135,0.355694606,0.722311202,pos,ns,0.00295117,0.003951768,0.746797291,0.455751939,pos,ns,0.341271475,-0.000263166,0.000135901,-1.936452225,0.053720988,neg,ns,0.68460954,Ctnna2,Ctnna2_Exon,6,76902391,76902440,76902439,76902440,50,-,CTACCTCATAAAAGGTAGTGAAAGTGCTCTGAACTCCTGTCTGATTTCCG,"Exon (Ctnna2-204/Ctnna2, exon 19 of 20)",6,76881637,77979699,1098063,2,Ctnna2-204,1077259,Ctnna2-204;Ctnna2-205;Ctnna2-202;Ctnna2-201;Ctnna2-207,Ctnna2;Ctnna2;Ctnna2;Ctnna2;Ctnna2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,16,24,12386,ENSMUSG00000063063,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19281,cg12292825,0.00000333,0.00000231,1.438665188,0.151254244,gain,ns,0.0000014,0.00000393,0.355681202,0.722321231,pos,ns,0.000814789,0.001150857,0.707984643,0.479486757,pos,ns,0.319223383,-0.0000127,0.0000396,-0.322139752,0.747563953,neg,ns,0.949253289,Foxp1,Foxp1_Intron,6,98939558,98939607,98939558,98939559,50,-,CGATGTGTTTGCCTCCAGGGAGTATGATGCTTTGTGCACTTAAGAAAAAA,"Intron (Foxp1-206/Foxp1, intron 16 of 17)",6,98925338,99266515,341178,2,Foxp1-206,326908,Foxp1-206;Foxp1-204;Foxp1-220;Foxp1-230;Foxp1-225;Foxp1-201;Foxp1-205;Foxp1-207;Foxp1-208;Foxp1-226;Foxp1-228;Foxp1-221;Foxp1-222;Foxp1-217,Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,87,108655,ENSMUSG00000030067,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12642,cg00117955,-0.00000284,0.00000169,-1.679927425,0.093978853,loss,ns,-0.00000102,0.00000288,-0.355525252,0.722437922,neg,ns,-0.000213279,0.000842871,-0.253038601,0.800406099,neg,ns,0.096689611,-0.0000418,0.000029,-1.443156834,0.149986,neg,ns,0.950980335,Apbb2,Apbb2_threeUTR,5,66302564,66302613,66302564,66302565,50,+,CGTTTCTGTTTCAAAGTGTCAATGAGGGATAAGACCCCTCGTTTTACATT,3' UTR,5,66298703,66313728,15026,2,Apbb2-219,11115,Apbb2-219;Apbb2-216;Apbb2-210;Apbb2-203;Apbb2-204;Apbb2-221;Apbb2-209;Apbb2-201;Apbb2-215;Apbb2-206;Apbb2-212;Nsun7-203;Nsun7-201,Apbb2;Apbb2;Apbb2;Apbb2;Apbb2;Apbb2;Apbb2;Apbb2;Apbb2;Apbb2;Apbb2;Nsun7;Nsun7,0;0;0;0;0;0;0;0;0;0;34870;42652;42252,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,11787,ENSMUSG00000029207,conserved gene and region,5,66302560,66302706,147,*,147,10,0.578231293,0.819397993,0.068027211,0.00000233,CpGisland,TRUE,NA,NRS
13993,cg10736991,-0.0000499,0.00000939,-5.315520752,0.000000204,loss,yes,0.00000567,0.000016,0.355439422,0.722502147,pos,ns,-0.000303622,0.004674533,-0.064952458,0.948253718,neg,ns,0.023075446,-0.000114913,0.000160757,-0.714823423,0.475256116,neg,ns,0.833145665,Gm13668,Gm13668_Intergenic_upstream,2,74097243,74097292,74097243,74097244,50,-,CGTTCACAGATAAGTGACTGTACATAATAATCATGTATTTATGTAAGGGA,Distal Intergenic,2,73959669,73960669,1001,2,Gm13668-201,-136623,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,18,20,667729,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10290,cg26323516,-0.0000125,0.00000274,-4.575016386,0.0000069,loss,ns,0.00000165,0.00000465,0.355395575,0.722534957,pos,ns,0.003745016,0.001361398,2.750860181,0.006293368,pos,ns,2.201116883,-0.0000912,0.0000468,-1.948945833,0.052203674,neg,ns,0.939493899,Hibadh,Hibadh_Intron,6,52551583,52551632,52551583,52551584,50,+,CGTCATGCTTCACTGGAGAAGACTGAGTTTCCATTCGAAATCAACAAATT,"Intron (Hibadh-201/Hibadh, intron 6 of 7)",6,52546228,52640389,94162,2,Hibadh-201,88757,Hibadh-201;Hibadh-203;Hibadh-202;Hibadh-204,Hibadh;Hibadh;Hibadh;Hibadh,0;0;0;4885,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,13,58875,ENSMUSG00000029776,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24574,cg26676471,0.00000369,0.00000323,1.142368455,0.254182441,gain,ns,0.00000195,0.00000549,0.355307816,0.722600629,pos,ns,0.000927835,0.001608009,0.577008631,0.5643524,pos,ns,0.248449624,0.0000106,0.0000553,0.190801984,0.84880563,pos,ns,0.056329759,Maz,Maz_Exon,7,127025319,127025368,127025367,127025368,50,-,CCACAGTGGGAGCAGTTGTAGGGCTTGTGCACAGCGCCGTCATGTGAGCG,"Exon (Maz-203/Maz, exon 2 of 6)",7,127022130,127026526,4397,2,Maz-203,1158,Gm42742-201;Gm42742-203;Gm42742-204;Gm42742-202;Kif22-202;Kif22-201;Kif22-205;Kif22-206;Maz-203;Maz-201;Maz-204;Maz-202;Maz-206;Maz-205;Prrt2-201;Prrt2-202;Prrt2-205;Prrt2-206;Prrt2-207,Gm42742;Gm42742;Gm42742;Gm42742;Kif22;Kif22;Kif22;Kif22;Maz;Maz;Maz;Maz;Maz;Maz;Prrt2;Prrt2;Prrt2;Prrt2;Prrt2,0;0;0;0;3589;17103;2748;7336;0;0;0;0;0;0;0;0;-4363;-4182;-4964,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,16,17,17188,ENSMUSG00000030678,conserved gene and region,7,127025353,127025621,269,*,269,30,0.669144981,1.002359955,0.111524164,1.16E-24,CpGisland,TRUE,NA,NRS
24431,cg17005528,0.00000683,0.00000671,1.018027721,0.309458626,gain,ns,-0.00000405,0.0000114,-0.355089665,0.722763884,neg,ns,0.000430443,0.003337372,0.12897649,0.89745989,pos,ns,0.046984952,-0.000160164,0.000114772,-1.395496227,0.163865039,neg,ns,0.572756171,Csf3r,Csf3r_Intergenic_upstream,4,125882262,125882311,125882310,125882311,50,-,ACCTGGTGAGTTACAAGACGGTGAAATTGCTTCCACCTGAGGTTGTCACG,Distal Intergenic,4,126024550,126044440,19891,1,Csf3r-202,-142288,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,7,12986,ENSMUSG00000028859,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26984,cg10662976,0.00000847,0.00000542,1.56286872,0.119103714,gain,ns,0.00000327,0.00000921,0.355057175,0.7227882,pos,ns,0.00605275,0.002697359,2.243954026,0.025540901,pos,ns,1.592763791,-0.00036383,0.0000928,-3.92219175,0.000108084,neg,ns,0.819200984,Tmem240,Tmem240_Exon,4,155739851,155739900,155739899,155739900,50,-,TCGTGGACCTGGCTGCCCAAGCTGTGCAGCCTGCGGGAGCTGGGCCGGCG,"Exon (Tmem240-202/Tmem240, exon 5 of 5)",4,155734800,155740142,5343,1,Tmem240-202,5051,Atad3a-201;Atad3a-202;Tmem240-202;Tmem240-203;Tmem240-201,Atad3a;Atad3a;Tmem240;Tmem240;Tmem240,0;6445;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,381582,ENSMUSG00000084845,conserved gene and region,4,155739852,155740068,217,*,217,17,0.68202765,0.67366691,0.078341014,1.75E-11,CpGisland,TRUE,NA,NRS
25661,cg02852178,0.000000111,0.0000013,0.08581505,0.93166884,gain,ns,-0.000000783,0.0000022,-0.355030839,0.72280791,neg,ns,-0.000335467,0.000645747,-0.519501732,0.603781623,neg,ns,0.219120109,0.0000152,0.0000222,0.686165512,0.493121613,pos,ns,0.968807468,Zkscan1,Zkscan1_Exon,5,138101312,138101361,138101312,138101313,50,+,CGGAGAATTCACACTCGAGAAAAGCCCTACAAGTGCACTAAGTGTGGCAA,"Exon (Zkscan1-201/Zkscan1, exon 6 of 6)",5,138085084,138107822,22739,1,Zkscan1-201,16228,Zkscan1-201;Zkscan1-202;Zkscan1-204;Zkscan1-203,Zkscan1;Zkscan1;Zkscan1;Zkscan1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,74570,ENSMUSG00000029729,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7439,cg02690705,0.0000292,0.00000271,10.79022139,2.94E-23,gain,yes,-0.00000163,0.0000046,-0.355012071,0.722821955,neg,ns,0.002668397,0.001348705,1.978488117,0.048758593,pos,ns,1.311948831,-0.000000552,0.0000464,-0.011903018,0.990510646,neg,ns,0.083392143,Ostm1,Ostm1_Intron,10,42632756,42632805,42632804,42632805,50,-,CACTACATTTCCCAGCTATGTACTGAAAAAATCAGCTCGCTTGTCATTCG,"Intron (Ostm1-202/Ostm1, intron 2 of 5)",10,42583835,42698323,114489,1,Ostm1-202,48921,Ostm1-202;Ostm1-203,Ostm1;Ostm1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,21,22,14628,ENSMUSG00000038280,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
12098,cg18434357,0.00000576,0.00000123,4.676180378,0.00000437,gain,ns,-0.000000742,0.00000209,-0.354922812,0.722888759,neg,ns,0.00079125,0.00061285,1.291098167,0.197631584,pos,ns,0.704143649,-0.0000807,0.0000211,-3.83092377,0.000154533,neg,ns,0.032549747,Tet1,Tet1_Intron,10,62865344,62865393,62865344,62865345,50,+,CGTGCTGGGCATGCCTTTTGCAAAAACAGCCCCACAAAGAGTGCAGCCAA,"Intron (Tet1-201/Tet1, intron 1 of 10)",10,62804570,62880014,75445,2,Tet1-201,14621,Tet1-201;Tet1-206;Tet1-202,Tet1;Tet1;Tet1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,5,52463,ENSMUSG00000047146,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12555,cg09996908,0.0000808,0.00000752,10.7474335,4.13E-23,gain,yes,0.00000453,0.0000128,0.354800469,0.722980327,pos,ns,0.00923505,0.003740474,2.468951669,0.014089841,pos,ns,1.851093914,-0.000011,0.000128635,-0.085543853,0.931884255,neg,ns,0.137835374,Igdcc3,Igdcc3_Intron,9,65162715,65162764,65162715,65162716,50,+,CGACATCAAACCCTCGTTTGGCGTGCGAGGACAATGGCTGTCTTATTTTC,"Intron (Igdcc3-201/Igdcc3, intron 2 of 13)",9,65141189,65185872,44684,1,Igdcc3-201,21526,Igdcc3-201;Igdcc3-203,Igdcc3;Igdcc3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,19289,ENSMUSG00000032394,conserved gene but different region,9,65162626,65163102,477,*,477,51,0.668763103,0.969280421,0.106918239,1.43E-40,CpGisland,TRUE,U13,Hc-P
4372,cg26870711,-0.0000227,0.00000539,-4.206804688,0.0000339,loss,ns,-0.00000325,0.00000916,-0.354764821,0.723007008,neg,ns,-0.0044109,0.002685015,-1.642784212,0.101441482,neg,ns,0.993784415,0.000086,0.0000923,0.931845955,0.352141291,pos,ns,0.928732637,Srpk1,Srpk1_Exon,17,28600356,28600405,28600404,28600405,50,+,TCCATTTCCTCAATTTCCTGCATTCGCTTCTCTAGTAATTCTGCCTGGCG,"Exon (Srpk1-212/Srpk1, exon 10 of 15)",17,28587648,28622487,34840,2,Srpk1-212,22082,Srpk1-212;Srpk1-204;Srpk1-201;Srpk1-203;Srpk1-211;Srpk1-213;Srpk1-207;Srpk1-210;Srpk1-208;Srpk1-206,Srpk1;Srpk1;Srpk1;Srpk1;Srpk1;Srpk1;Srpk1;Srpk1;Srpk1;Srpk1,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,4,20815,ENSMUSG00000004865,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6481,cg01935699,0.00000916,0.0000139,0.657835822,0.511131815,gain,ns,0.00000839,0.0000237,0.354735345,0.72302907,pos,ns,-0.005898426,0.006932117,-0.850883773,0.395490671,neg,ns,0.402863756,0.000201201,0.000238395,0.843982932,0.399329747,pos,ns,0.676022846,Tenm2,Tenm2_Intergenic_upstream,11,37424661,37424710,37424709,37424710,50,-,GTCGGGTTGTAGAGTTTTTCAATATGTACTCTAATTCCCTTTAAGAAACG,Distal Intergenic,11,36944205,37235964,291760,2,Tenm2-207,-188746,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,9,84,23964,ENSMUSG00000049336,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2140,cg03524461,-0.0000109,0.00000306,-3.560303259,0.000428528,loss,ns,-0.00000184,0.00000519,-0.354645349,0.723096431,neg,ns,-0.003720133,0.001521586,-2.444905443,0.015045472,neg,ns,1.822594174,0.0000337,0.0000523,0.643851782,0.520147602,pos,ns,0.052743957,Mllt10,Mllt10_fiveUTR,2,18064804,18064853,18064852,18064853,50,+,CAGCAAGGACATGGCTCCTGACTCCTGTGCGGAACGTGAGTGACTGAGCG,Promoter (<=1kb),2,18064805,18123812,59008,1,Mllt10-205,0,Mllt10-201;Mllt10-208;Mllt10-203;Mllt10-210;Mllt10-204;Mllt10-205;Mllt10-209;Mllt10-211,Mllt10;Mllt10;Mllt10;Mllt10;Mllt10;Mllt10;Mllt10;Mllt10,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,4,17354,ENSMUSG00000026743,conserved gene and region,2,18064833,18064988,156,*,156,24,0.769230769,1.238095238,0.153846154,1.29E-23,CpGisland,TRUE,U1,Pr-A
13156,cg19826810,0.00000246,0.00000122,2.021635613,0.044072888,gain,ns,-0.000000733,0.00000207,-0.35458043,0.723145024,neg,ns,0.00125885,0.000605267,2.079825507,0.038362944,pos,ns,1.416088068,-0.0000282,0.0000208,-1.353277065,0.176953118,neg,ns,0.022850083,Tcf4,Tcf4_Intron,18,69592792,69592841,69592792,69592793,50,-,CGAGTTCTCAGGCAGCTGCGTACAATGCTGGGAGCTAGCCAGCAGCAGAG,"Intron (Tcf4-201/Tcf4, intron 9 of 20)",18,69344146,69684343,340198,1,Tcf4-201,248646,Tcf4-201;Tcf4-207;Tcf4-240;Tcf4-254;Tcf4-246;Tcf4-206;Tcf4-202;Tcf4-257;Tcf4-232;Tcf4-248;Tcf4-231;Tcf4-205;Tcf4-253;Tcf4-238;Tcf4-249;Tcf4-219;Tcf4-227;Tcf4-250;Tcf4-229;Tcf4-260;Tcf4-226;Tcf4-216;Tcf4-256;Tcf4-230;Tcf4-221;Tcf4-234;Tcf4-258;Tcf4-217;Tcf4-247;Tcf4-252;Tcf4-218;Tcf4-243;Tcf4-237;Tcf4-239;Tcf4-262;Tcf4-223;Tcf4-212;Tcf4-204;Tcf4-225;Tcf4-222;Tcf4-261;Tcf4-255;Tcf4-203;Tcf4-241;Tcf4-236;Tcf4-228;Tcf4-220;Tcf4-242,Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,42,66,21413,ENSMUSG00000053477,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
10255,cg01687105,-0.00000828,0.00000917,-0.902733627,0.36736818,loss,ns,0.00000552,0.0000156,0.354572484,0.723150972,pos,ns,-0.000717518,0.004562734,-0.157256235,0.875145284,neg,ns,0.057919843,-0.000430626,0.000156912,-2.744378852,0.006415926,neg,ns,0.541850638,Kcnh8,Kcnh8_Intron,17,52308425,52308474,52308425,52308426,50,+,CGAGGCAATAACCCATATAAGTTGTCAAGGTGAAGCCAAAGCATTTATTA,"Intron (Gm41600-201/Gm41600-201, intron 1 of 2)",17,52602709,52979194,376486,1,Kcnh8-201,-294235,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,8,211468,ENSMUSG00000035580,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16200,cg20206289,7.34E-08,0.000000686,0.107043103,0.914824025,gain,ns,0.000000413,0.00000116,0.354519891,0.72319034,pos,ns,-0.000284296,0.000341251,-0.833099088,0.405430242,neg,ns,0.392083859,0.00000815,0.0000117,0.694593342,0.487830424,pos,ns,0.016473097,Cyp26b1,Cyp26b1_Intron,6,84585868,84585917,84585916,84585917,50,+,GTGCGTTTTTTGTGGCATTAATAAAGAGTTATTTGTCCGCCGTTTCCACG,"Intron (Cyp26b1-205/Cyp26b1, intron 1 of 5)",6,84571414,84587680,16267,2,Cyp26b1-205,1763,Cyp26b1-205;Cyp26b1-204;Cyp26b1-201;Cyp26b1-202;Cyp26b1-203,Cyp26b1;Cyp26b1;Cyp26b1;Cyp26b1;Cyp26b1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,9,232174,ENSMUSG00000063415,conserved gene and region,6,84585539,84585962,424,*,424,40,0.608490566,1.020150376,0.094339623,1.31E-29,CpGisland,TRUE,U3,Pr-B
3481,cg00472347,0.000000968,0.000000809,1.196536458,0.232401577,gain,ns,0.000000487,0.00000137,0.354475014,0.723223932,pos,ns,-0.000257796,0.00040251,-0.640471338,0.522339342,neg,ns,0.282047263,-0.00000711,0.0000138,-0.5132968,0.608109334,neg,ns,0.98219215,Bcl11a,Bcl11a_Exon,11,24163776,24163825,24163776,24163777,50,+,CGGTCAAGTCCAAGTCATGCGAGTTCTGCGGCAAGACGTTCAAATTTCAG,"Exon (Bcl11a-201/Bcl11a, exon 4 of 5)",11,24078056,24173194,95139,1,Bcl11a-201,85720,Bcl11a-201;Bcl11a-203;Bcl11a-202;Bcl11a-204;Bcl11a-206,Bcl11a;Bcl11a;Bcl11a;Bcl11a;Bcl11a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,51,98,14025,ENSMUSG00000000861,conserved gene and region,11,24163725,24163848,124,*,124,9,0.612903226,0.894230769,0.072580645,0.00000547,CpGisland,TRUE,U10,Tr-S
1327,cg04826403,0.0000229,0.00000383,5.98024397,6.13E-09,gain,yes,-0.00000231,0.00000651,-0.354430166,0.723257504,neg,ns,0.002960402,0.001908626,1.551064411,0.121906524,pos,ns,0.913973052,0.0000136,0.0000656,0.207318524,0.835897228,pos,ns,0.045828533,Fezf2,Fezf2_fiveUTR,14,12346672,12346721,12346720,12346721,50,-,CTATTAAAACGTTTTTCCTCCTAAGGCCATTCAGTCGAACCAATTTTCCG,5' UTR,14,12343388,12348189,4802,2,Fezf2-202,1468,Fezf2-203;Fezf2-201;Fezf2-202,Fezf2;Fezf2;Fezf2,0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,13,45,54713,ENSMUSG00000021743,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
873,cg15582951,-0.0000315,0.00000663,-4.751233023,0.0000031,loss,ns,0.00000399,0.0000113,0.354425494,0.723261001,pos,ns,-0.007402685,0.003301262,-2.242380307,0.025643502,neg,ns,1.591022666,-0.00000884,0.00011353,-0.077860311,0.937989401,neg,ns,0.861246184,Zbtb10,Zbtb10_Exon,3,9264673,9264722,9264721,9264722,50,+,AGCGGAAAAATCTTCAAAGCTCATAAGAACATCCTGGTTGCAGGCAGCCG,"Exon (Zbtb10-201/Zbtb10, exon 2 of 6)",3,9250602,9285333,34732,1,Zbtb10-201,14071,Zbtb10-201,Zbtb10,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,9,229055,ENSMUSG00000069114,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19211,cg20925328,-0.000003,0.00000106,-2.833327341,0.004908582,loss,ns,-0.000000637,0.0000018,-0.354383292,0.723292593,neg,ns,-0.000496373,0.000526269,-0.943191706,0.346317332,neg,ns,0.460525774,0.000000987,0.0000181,0.054529393,0.956548516,pos,ns,0.032387204,Msl1,Msl1_Exon,11,98796264,98796313,98796312,98796313,50,+,TGGCGGCGGCCAAAGAGCCTACGCCCTGGGCTGGGGACAAGGGTGGGGCG,Promoter (<=1kb),11,98795516,98807859,12344,1,Msl1-201,748,Msl1-201;Msl1-203;Msl1-204;Msl1-202;Msl1-205,Msl1;Msl1;Msl1;Msl1;Msl1,0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,11,13,74026,ENSMUSG00000052915,conserved gene and region,11,98794920,98796415,1496,*,1496,166,0.753342246,0.784230504,0.110962567,1.43E-133,CpGisland,TRUE,U1,Pr-A
1059,cg20451633,-0.0000679,0.0000134,-5.049939817,0.000000756,loss,yes,-0.0000081,0.0000228,-0.354383178,0.723292678,neg,ns,-0.018274429,0.006693382,-2.730223691,0.006691126,neg,ns,2.174500787,0.00012337,0.000230185,0.535962171,0.592369035,pos,ns,0.778624405,Col4a2,Col4a2_Intron,8,11347857,11347906,11347905,11347906,50,-,GCTAATACCATGTTGGAATTATTTCCTTAATTTCTAAAGCTGCATGTGCG,"Intron (Col4a2-201/Col4a2, intron 3 of 47)",8,11312805,11449287,136483,1,Col4a2-201,35052,Col4a2-201,Col4a2,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,12827,ENSMUSG00000031503,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3730,cg24667177,-0.000000624,0.00000156,-0.401103806,0.688620029,loss,ns,-0.000000936,0.00000264,-0.354290346,0.723362171,neg,ns,0.000478703,0.000774279,0.618256565,0.536860196,pos,ns,0.270138795,-0.0000196,0.0000266,-0.737629245,0.461297742,neg,ns,0.061583184,Pou2f2,Pou2f2_Promoter,7,25179474,25179523,25179474,25179475,50,-,CGGCTGCATTAAGCTTCTTGCAATCAATAAAGCGCGGGTCAGATTATGCA,Promoter (<=1kb),7,25120618,25179726,59109,2,Pou2f2-208,203,Pou2f2-208,Pou2f2,0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,11,29,18987,ENSMUSG00000008496,conserved gene and region,7,25179353,25179528,176,*,176,22,0.6875,1.07436182,0.125,2.22E-19,CpGisland,TRUE,U3,Pr-B
12656,cg16242634,-0.00000535,0.00000174,-3.069410435,0.002334426,loss,ns,0.00000105,0.00000296,0.354079767,0.723519817,pos,ns,0.000224995,0.000867751,0.259284678,0.795587696,pos,ns,0.099311942,-0.00000335,0.0000298,-0.112320037,0.91064235,neg,ns,0.941567827,Herc1,Herc1_Exon,9,66418392,66418441,66418440,66418441,50,+,ACAGAAATCTTTCAGTGTTTCCTCTCAGCCCGTGAAGTAGCTCGTAGCCG,"Exon (Herc1-201/Herc1, exon 23 of 78)",9,66350526,66508775,158250,1,Herc1-201,67866,Herc1-201,Herc1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,15,15,235439,ENSMUSG00000038664,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8989,cg17507598,-0.0000119,0.00000251,-4.734503047,0.00000335,loss,ns,0.00000151,0.00000427,0.353994348,0.723583767,pos,ns,0.00012562,0.001250838,0.10042831,0.920069213,pos,ns,0.036179501,-0.0000552,0.000043,-1.283914388,0.200130693,neg,ns,0.062779286,Trim8,Trim8_fiveUTR,19,46501726,46501775,46501726,46501727,50,-,CGGGCTGGTGTCTCTGGCCGGGGACTGGAATTTCATCTGAATGACTGCCC,Promoter (<=1kb),19,46501702,46516848,15147,1,Trim8-201,24,Trim8-201,Trim8,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,21,93679,ENSMUSG00000025034,conserved gene and region,19,46501691,46502449,759,*,759,94,0.748353096,0.884615385,0.123847167,4.99E-81,CpGisland,TRUE,U1,Pr-A
9880,cg16184138,-0.00000289,0.00000394,-0.733600894,0.463746443,loss,ns,0.00000237,0.00000669,0.353981666,0.723593262,pos,ns,0.001292892,0.001960777,0.659377635,0.510142821,pos,ns,0.29230822,-0.000125434,0.0000674,-1.860190281,0.063805508,neg,ns,0.925556992,Gm49908,Gm49908_Intergenic_upstream,17,51321626,51321675,51321626,51321627,50,-,CGGGAAGAGAATAATGTACTTTTTTATTAAAATGGAAATGACACACTGCT,Distal Intergenic,17,51236771,51237062,292,2,Gm49908-201,-84613,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,9,9,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17625,cg09549491,0.0000146,0.0000291,0.502992319,0.615326842,gain,ns,0.0000175,0.0000494,0.353966406,0.723604687,pos,ns,0.04353981,0.014486707,3.005500798,0.002867971,pos,ns,2.542425283,-0.001248734,0.000498197,-2.506507656,0.012704798,neg,ns,0.825773389,Olig1,Olig1_Intron,16,91301525,91301574,91301573,91301574,50,+,AAAGCCAGGCCTCGCTTTAGTGAACCCGTTCAGGAATGTGGGTTAATTCG,"Intron (Gm15966-209/Gm15966-209, intron 1 of 2)",16,91269772,91271933,2162,1,Olig1-201,31753,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,9,50914,ENSMUSG00000046160,mapped to different genes,16,91301407,91301578,172,*,172,14,0.558139535,1.045138889,0.081395349,9.34E-10,CpGisland,TRUE,NA,NRS
23870,cg09536021,-0.0000286,0.00000546,-5.240014283,0.000000297,loss,yes,-0.00000328,0.00000928,-0.353952897,0.723614801,neg,ns,-0.001015264,0.002717959,-0.37353898,0.709002659,neg,ns,0.149352136,-0.0000296,0.0000935,-0.316441391,0.751880477,neg,ns,0.904113397,Mosmo,Mosmo_threeUTR,7,120726287,120726336,120726287,120726288,50,-,CGAAGAGAAGCTACAAAATATGCTCGATGGATAGCATTCACTGGAAGTAA,3' UTR,7,120677618,120730638,53021,1,Mosmo-202,48669,Mosmo-202;Mosmo-205;Mosmo-201;Mosmo-207;Mosmo-204;Mosmo-203;Mosmo-208;Mosmo-206,Mosmo;Mosmo;Mosmo;Mosmo;Mosmo;Mosmo;Mosmo;Mosmo,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,6,233812,ENSMUSG00000046096,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24144,cg01193810,-0.0000031,0.00000165,-1.884798481,0.060392331,loss,ns,0.000000989,0.0000028,0.353939452,0.723624867,pos,ns,0.000884485,0.000818932,1.080046375,0.280961088,pos,ns,0.551353825,-0.0000514,0.0000282,-1.824903984,0.068977779,neg,ns,0.077182026,D630033A02Rik,D630033A02Rik_Exon,10,122985628,122985677,122985676,122985677,50,-,GCATCACCAGCACTAGCAAGGCAGTAGCTTGCGCAGTTATCTCCACAGCG,Promoter (<=1kb),10,122985074,122985831,758,2,D630033A02Rik-202,154,D630033A02Rik-202;D630033A02Rik-201,D630033A02Rik;D630033A02Rik,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,402753,NA,mapped to different genes,10,122985225,122985694,470,*,470,59,0.644680851,1.224498808,0.125531915,1.84E-51,CpGisland,TRUE,U1,Pr-A
21379,cg00005112,-0.00000976,0.00000374,-2.607523503,0.00956123,loss,ns,-0.00000225,0.00000636,-0.353937649,0.723626217,neg,ns,-0.002377557,0.001862818,-1.276322777,0.202796796,neg,ns,0.692938911,0.000018,0.0000641,0.28159926,0.778438689,pos,ns,0.876469982,Wwp2,Wwp2_fiveUTR,8,107544964,107545013,107544964,107544965,50,-,CGTGGGCAGGGCTTGTGGGAATGATTTCATTGGAAAGGCCTGCGATATTT,Promoter (<=1kb),8,107545012,107557213,12202,1,Wwp2-205,0,Wwp2-201;Wwp2-204;Wwp2-203;Wwp2-205,Wwp2;Wwp2;Wwp2;Wwp2,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,6,66894,ENSMUSG00000031930,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9455,cg06523030,0.0000406,0.0000047,8.645331346,2.92E-16,gain,yes,-0.00000283,0.00000798,-0.353893343,0.723659389,neg,ns,0.004339001,0.00233914,1.854955704,0.064551828,pos,ns,1.190091454,0.0000157,0.0000804,0.195017771,0.845506787,pos,ns,0.120597779,Csmd3,Csmd3_fiveUTR,15,48791984,48792033,48791984,48791985,50,+,CGGAGTGAATGGTGTTTCTGGGATACCACAGCAACCTTGACGAGGACTCA,Promoter (<=1kb),15,47580638,48791989,1211352,2,Csmd3-201,0,Csmd3-204;Csmd3-201;Csmd3-209;Csmd3-205;Csmd3-203,Csmd3;Csmd3;Csmd3;Csmd3;Csmd3,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,16,239420,ENSMUSG00000022311,conserved gene and region,15,48791819,48792094,276,*,276,17,0.550724638,0.814583333,0.061594203,8.17E-10,CpGisland,TRUE,U13,Hc-P
8871,cg08769194,-0.00000235,0.000000894,-2.628997326,0.008990526,loss,ns,-0.000000537,0.00000152,-0.353665027,0.723830337,neg,ns,-0.001189019,0.000444978,-2.672087,0.00793667,neg,ns,2.100361695,0.000038,0.0000153,2.485052435,0.013480442,pos,ns,0.984942754,Gtpbp2,Gtpbp2_threeUTR,17,46168188,46168237,46168236,46168237,50,-,TTCCTGAAACACCCAGAGTACCTGAAGGTGGGCGCCAAACTGCTGTTCCG,3' UTR,17,46161032,46169368,8337,1,Gtpbp2-211,7156,Gtpbp2-211;Gtpbp2-201;Gtpbp2-203;Gtpbp2-217;Gtpbp2-206;Gtpbp2-216;Gtpbp2-209;Gtpbp2-215;Gtpbp2-214;Gtpbp2-212;Gtpbp2-202;Gtpbp2-205;Gtpbp2-213;Gtpbp2-210;Gtpbp2-208;Gtpbp2-207;Polh-201;Polh-202,Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Gtpbp2;Polh;Polh,0;0;7139;0;7077;6893;5155;0;0;0;0;0;1321;0;0;0;34408;34385,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,TRUE,FALSE,threeUTR,7,7,56055,ENSMUSG00000023952,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10247,cg23765988,0.0000342,0.00000511,6.696129754,1.01E-10,gain,yes,0.00000307,0.00000868,0.353532742,0.723929391,pos,ns,0.007966181,0.002543223,3.132317141,0.001899897,pos,ns,2.721269961,-0.000149292,0.0000875,-1.706948317,0.088833003,neg,ns,0.059022132,Hoxa13,Hoxa13_Intergenic_upstream,6,52270961,52271010,52271009,52271010,50,+,TTAAATAACATGGCAAGTCTGAGCACACACCTCGGATTAAACTTTAATCG,Distal Intergenic,6,52258853,52260880,2028,2,Hoxa13-201,-10081,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,12,15398,ENSMUSG00000038203,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
26317,cg00165325,0.000017,0.00000705,2.409624716,0.016551398,gain,ns,0.00000423,0.000012,0.353392964,0.724034059,pos,ns,0.007146551,0.003507646,2.037421063,0.042456826,pos,ns,1.372052481,-0.000251208,0.000120628,-2.082503636,0.038116113,neg,ns,0.139118441,Gm14111,Gm14111_Intergenic_downstream,2,146721382,146721431,146721382,146721383,50,+,CGTGGGTTACTAATACTGATGTGTATGTCTCTAATTAACATTAGAATTGA,Distal Intergenic,2,146754707,146755705,999,2,Gm14111-201,34274,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,15,17,668918,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24253,cg21469469,-0.0000104,0.00000386,-2.689729173,0.007538269,loss,ns,0.00000232,0.00000656,0.353374098,0.724048187,pos,ns,-0.000550037,0.001921105,-0.286312642,0.774829921,neg,ns,0.110793617,-0.00000575,0.0000661,-0.087028634,0.930704939,neg,ns,0.917297889,Pou3f1,Pou3f1_Intergenic_upstream,4,124346518,124346567,124346566,124346567,50,+,ATTAAACTTCAATCAGAGTTACAGAAAGAAATTTCCTCCAGGCGGCTGCG,Distal Intergenic,4,124656807,124660655,3849,1,Pou3f1-201,-310240,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,24,85,18991,ENSMUSG00000090125,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24630,cg01915196,-0.000011,0.00000611,-1.796402754,0.073403974,loss,ns,-0.00000367,0.0000104,-0.353314891,0.724092525,neg,ns,-0.001105595,0.003041776,-0.363470193,0.716501414,neg,ns,0.144782948,-0.000097,0.000104606,-0.927148691,0.354570605,neg,ns,0.038956476,Mbd6,Mbd6_Promoter,10,127289398,127289447,127289398,127289399,50,-,CGACCTCAGCCTGTCAAGTCACATGACCTCTGCCTGTCACTGACAACCTG,Promoter (<=1kb),10,127281956,127289018,7063,2,Mbd6-202,-429,Ddit3-201;Ddit3-203;Ddit3-202;Ddit3-204;Mbd6-203;Mbd6-201;Mbd6-202;Mbd6-206,Ddit3;Ddit3;Ddit3;Ddit3;Mbd6;Mbd6;Mbd6;Mbd6,-1327;-1346;-1347;-1382;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,1,6,110962,ENSMUSG00000025409,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
13020,cg12156848,-0.00000712,0.00001,-0.709974392,0.478253723,loss,ns,-0.00000602,0.000017,-0.353259255,0.724134188,neg,ns,-0.005847412,0.004992347,-1.171275227,0.24238765,neg,ns,0.615489513,0.0000886,0.000171686,0.515973253,0.606240903,pos,ns,0.853708919,Rora,Rora_Exon,9,69197508,69197557,69197556,69197557,50,+,GGCAGGCATGGTACAGAGCGCTTCCTTGCACAGCCTTGCCCATGAGCTCG,"Exon (Rora-206/Rora, exon 3 of 6)",9,68653786,69388246,734461,1,Rora-201,543722,Rora-201;Rora-206;Rora-203,Rora;Rora;Rora,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,19,19883,ENSMUSG00000032238,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8346,cg19553300,-0.00000614,0.00000287,-2.142538311,0.032928751,loss,ns,0.00000172,0.00000487,0.353131405,0.724229934,pos,ns,0.00347753,0.001426903,2.437118112,0.015367021,pos,ns,1.813410306,-0.000120188,0.0000491,-2.449271986,0.01486779,neg,ns,0.92981019,Zeb2,Zeb2_Intron,2,45032491,45032540,45032539,45032540,50,+,CTACGTGATTTTGGCTGTCAGTTATTGGGTATAATTACTGTAACTAACCG,"Intron (Zeb2-212/Zeb2, intron 3 of 10)",2,44983632,45117395,133764,2,Zeb2-212,84855,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-218;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7680,cg21956876,-0.0000007,0.000000867,-0.807398547,0.420055965,loss,ns,0.00000052,0.00000147,0.353014271,0.724317659,pos,ns,0.00026869,0.000431631,0.622499967,0.534070782,pos,ns,0.272401181,-0.0000211,0.0000148,-1.419869045,0.156650653,neg,ns,0.972814478,Zbtb20,Zbtb20_threeUTR,16,43642399,43642448,43642399,43642400,50,-,CGCCTTAAAAATACGAAAATAAATTTTACAAGGTTTCTGTTTTGTGTGGA,3' UTR,16,42907652,43642602,734951,1,Zbtb20-204,734747,Zbtb20-204,Zbtb20,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,9,98,56490,ENSMUSG00000022708,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16784,cg01329421,-0.000000441,0.00000049,-0.899830274,0.368909034,loss,ns,0.000000294,0.000000832,0.35295938,0.72435877,pos,ns,0.000411002,0.00024378,1.685950959,0.092811406,pos,ns,1.03239865,-0.000021,0.00000838,-2.504247383,0.012784597,neg,ns,0.009991533,Pcbp1,Pcbp1_Exon,6,86525766,86525815,86525766,86525767,50,-,CGAGATGTTGATCCGCGCGCCACTCTCCTCGCGGATCCTCTTAACCGACT,Promoter (<=1kb),6,86524492,86526321,1830,2,Pcbp1-201,506,Pcbp1-201,Pcbp1,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,14,15,23983,ENSMUSG00000051695,mapped to different genes,6,86525687,86527366,1680,*,1680,200,0.679166667,1.041169581,0.119047619,1.10E-167,CpGisland,TRUE,U1,Pr-A
5528,cg09998077,-0.0000256,0.00000566,-4.526661407,0.00000855,loss,ns,0.00000339,0.00000961,0.352869955,0.724425746,pos,ns,-0.00419305,0.00281465,-1.489723542,0.137313625,neg,ns,0.862286368,0.0000468,0.0000968,0.483688733,0.628948272,pos,ns,0.932257623,Gm5708,Gm5708_Intron,3,34196333,34196382,34196381,34196382,50,-,GTAATTTATAATGAAATACCTAATCTCCATTATTTTGATCCAAGCAGGCG,"Intron (Sox2ot-204/Sox2ot-204, intron 1 of 3)",3,34183307,34184192,886,1,Gm5708-201,13075,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,8,435727,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12399,cg18828625,-0.00000972,0.0000079,-1.231182835,0.219187719,loss,ns,-0.00000473,0.0000134,-0.352864952,0.724429493,neg,ns,-0.00925767,0.003930267,-2.355480982,0.019121442,neg,ns,1.718479362,0.000242224,0.000135162,1.792110032,0.074090427,pos,ns,0.120404804,Fign,Fign_Promoter,2,64097221,64097270,64097221,64097222,50,+,CGGTAATAGGATCAGTGGATTGTATATACCATTAAATTATACATCTTTCT,Promoter (<=1kb),2,63971507,64098012,126506,2,Fign-203,742,Fign-203;Fign-201;Fign-202;Fign-204,Fign;Fign;Fign;Fign,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,12,84,60344,ENSMUSG00000075324,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
21886,cg13108197,-0.0000019,0.000000692,-2.750592801,0.006298382,loss,ns,0.000000415,0.00000117,0.352810649,0.724470165,pos,ns,-0.000110891,0.000344196,-0.322175164,0.747537153,neg,ns,0.126367218,-0.0000139,0.0000118,-1.17732408,0.239969285,neg,ns,0.982431719,Dhx38,Dhx38_Exon,8,109558938,109558987,109558938,109558939,50,-,CGCCCATCCAGAAAGGGAGGCACCAGATTGTGCACCATCAGATGCACCTT,"Exon (Dhx38-201/Dhx38, exon 9 of 27)",8,109548011,109565861,17851,2,Dhx38-201,6874,Dhx38-201,Dhx38,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,64340,ENSMUSG00000037993,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23203,cg01796610,-0.00000884,0.00000395,-2.237499768,0.025963978,loss,ns,-0.00000237,0.00000671,-0.352688677,0.724561523,neg,ns,0.001778945,0.001965605,0.905036955,0.366148639,pos,ns,0.436342576,-0.0000856,0.0000676,-1.266876533,0.206150411,neg,ns,0.853711634,Cmip,Cmip_Exon,8,117454941,117454990,117454989,117454990,50,+,AAACCTGGAGAACCTCAGTTTGGCCTTCACCAATGTAACCAGTGCCTGCG,"Exon (Cmip-202/Cmip, exon 18 of 21)",8,117257064,117459430,202367,1,Cmip-202,197877,Cmip-202;Cmip-201;Cmip-204,Cmip;Cmip;Cmip,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,74440,ENSMUSG00000034390,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21357,cg01798687,0.0000147,0.0000037,3.956055992,0.0000945,gain,ns,-0.00000222,0.00000629,-0.352569274,0.724650962,neg,ns,0.001883401,0.001843433,1.021681319,0.307728389,pos,ns,0.511832437,-0.00010079,0.0000634,-1.589859974,0.112885647,neg,ns,0.066417963,Kcnc4,Kcnc4_Exon,3,107458809,107458858,107458857,107458858,50,+,CCTCCTTCAGACATGTTTTGGACGGAGGCTTGTTCCCCGACTTGCGCCCG,Promoter (<=1kb),3,107438303,107459552,21250,2,Kcnc4-201,694,Kcnc4-201;Kcnc4-202,Kcnc4;Kcnc4,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,12,99738,ENSMUSG00000027895,conserved gene and region,3,107458518,107458984,467,*,467,47,0.665952891,0.908861284,0.100642398,4.28E-36,CpGisland,TRUE,U13,Hc-P
9549,cg17171514,-0.00000127,0.00000114,-1.110227117,0.267761598,loss,ns,-0.000000684,0.00000194,-0.352364478,0.724804371,neg,ns,-0.001281342,0.000568297,-2.254705234,0.024849458,neg,ns,1.604683077,0.0000386,0.0000195,1.976810699,0.048948937,pos,ns,0.96439068,Mbd5,Mbd5_Exon,2,49257417,49257466,49257417,49257418,50,-,CGGAAGTAGTTCTGTAAAGAGTCAGCCTGGTTTGCTGGGAATGCCTTTAA,"Exon (Mbd5-202/Mbd5, exon 11 of 11)",2,48949508,49260558,311051,1,Mbd5-202,307909,Mbd5-202;Mbd5-203;Mbd5-201;Mbd5-215;Mbd5-204,Mbd5;Mbd5;Mbd5;Mbd5;Mbd5,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,10,109241,ENSMUSG00000036792,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25021,cg10073942,0.0000258,0.00000327,7.897227244,4.99E-14,gain,yes,-0.00000196,0.00000556,-0.3522405,0.724897247,neg,ns,0.004980008,0.001628332,3.058348423,0.002419693,pos,ns,2.616239806,-0.00000801,0.000056,-0.143099399,0.886304648,neg,ns,0.07431792,Fgfr2,Fgfr2_Intron,7,131552414,131552463,131552414,131552415,50,-,CGGGTTAATGAGCTGACACCATGATTAAAGCTGACCATTTGTAATGTGTC,"Intron (Hmx2-202/Hmx2, intron 1 of 2)",7,130162451,133123350,2960900,2,Fgfr2-217,1570887,Fgfr2-217;Hmx2-202;Hmx2-201,Fgfr2;Hmx2;Hmx2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,58,79,14183,ENSMUSG00000030849,mapped to different genes,7,131552315,131552415,101,*,101,11,0.653465347,1.035414725,0.108910891,4.14E-09,CpGisland,TRUE,U13,Hc-P
21268,cg09349243,0.000000453,0.00000556,0.081372205,0.935198463,gain,ns,0.00000333,0.00000945,0.352175575,0.724945886,pos,ns,-0.000552202,0.002767798,-0.199509567,0.841994961,neg,ns,0.074690508,-0.000137451,0.0000952,-1.444052824,0.14973399,neg,ns,0.542584747,Dock3,Dock3_Exon,9,107032304,107032353,107032352,107032353,50,+,TTCTCTGGGTTCCTCGGCCCACCATTCTTGTTCAGTCTTACCAGAAACCG,"Exon (Dock3-201/Dock3, exon 10 of 53)",9,106892825,107231909,339085,2,Dock3-201,199556,Dock3-201,Dock3,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,9,208869,ENSMUSG00000039716,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3187,cg26425570,-0.000116001,0.000018,-6.453562563,4.20E-10,loss,yes,0.0000108,0.0000305,0.352118495,0.724988648,pos,ns,0.002631831,0.008946204,0.294184152,0.768814072,pos,ns,0.114178676,0.000443501,0.000307659,1.441534771,0.150443056,pos,ns,0.633426252,Klf9,Klf9_Intron,19,23147178,23147227,23147226,23147227,50,-,AGTGCCTAGTAATTGGTACAAAGGCACTTTCTGTTTCTATGCAACACACG,"Intron (Klf9-201/Klf9, intron 1 of 1)",19,23141226,23168134,26909,1,Klf9-201,5952,Klf9-201;Klf9-202,Klf9;Klf9,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,13,16601,ENSMUSG00000033863,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
12801,cg02724885,0.0000399,0.00000388,10.28598129,1.52E-21,gain,yes,-0.00000232,0.0000066,-0.352046184,0.725042822,neg,ns,0.005422702,0.001932584,2.805932744,0.0053344,pos,ns,2.272914442,-0.0000482,0.0000665,-0.72482052,0.469108869,neg,ns,0.040354232,Mdga2,Mdga2_Exon,12,67220957,67221006,67220957,67220958,50,+,CGATTCCACTCACCGTACACTCCTTGGCCAGAGATCCCCTCCAGGAGGAC,"Exon (Mdga2-201/Mdga2, exon 1 of 17)",12,66466060,67222549,756490,2,Mdga2-201,1543,Mdga2-201;Mdga2-206;Mdga2-202;Mdga2-212;Mdga2-208;Mdga2-207,Mdga2;Mdga2;Mdga2;Mdga2;Mdga2;Mdga2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,3,320772,ENSMUSG00000034912,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
6180,cg05934778,-0.0000119,0.00000615,-1.938790093,0.053434279,loss,ns,0.00000368,0.0000105,0.352018331,0.72506369,pos,ns,0.003458639,0.003062746,1.129260861,0.259660882,pos,ns,0.585593471,-0.000144855,0.000105328,-1.375282762,0.170036819,neg,ns,0.893840222,Trim39,Trim39_threeUTR,17,36261484,36261533,36261532,36261533,50,-,AACTCACCAATTAGCTGTTTAAGGATTTTCCTTAGGGCAAAGTACTGTCG,3' UTR,17,36258873,36268752,9880,2,Trim39-206,7219,Rpp21-202;Rpp21-205;Rpp21-201;Rpp21-203;Rpp21-206;Trim39-206;Trim39-203;Trim39-201;Trim39-205;Trim39-207;Trim39-202;Trim39-204,Rpp21;Rpp21;Rpp21;Rpp21;Rpp21;Trim39;Trim39;Trim39;Trim39;Trim39;Trim39;Trim39,-3628;-3641;-3415;-3874;-3629;0;0;0;0;0;9850;10714,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,2,79263,ENSMUSG00000045409,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1229,cg19364802,0.00000346,0.00000648,0.533882119,0.593805707,gain,ns,0.00000388,0.000011,0.351948092,0.725116314,pos,ns,0.009404309,0.003226744,2.914488645,0.003822056,pos,ns,2.417702902,-0.000315399,0.000110967,-2.842261308,0.004776543,neg,ns,0.070326252,Bcor,Bcor_Intron,X,12077534,12077583,12077534,12077535,50,-,CGCTAATGAGCTGTGCAGCCCATTGATCCGGAGAACACTTCCTAATTAAC,"Intron (Bcor-202/Bcor, intron 1 of 14)",20,12036740,12080553,43814,2,Bcor-202,2970,Bcor-202;Bcor-203;Bcor-204;Bcor-206;Bcor-201;Bcor-207;Bcor-205,Bcor;Bcor;Bcor;Bcor;Bcor;Bcor;Bcor,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,56,74,71458,ENSMUSG00000040363,conserved gene and region,X,12077216,12077550,335,*,335,28,0.671641791,0.755476804,0.08358209,2.26E-19,CpGisland,TRUE,NA,NRS
17205,cg18721957,-0.0000121,0.00000481,-2.526284146,0.012025266,loss,ns,0.00000287,0.00000816,0.351843629,0.725194581,pos,ns,-0.001602562,0.002391821,-0.670017648,0.503345321,neg,ns,0.298133964,0.00009,0.0000823,1.094742454,0.274479325,pos,ns,0.822856504,Scamp3,Scamp3_Exon,3,89182338,89182387,89182386,89182387,50,+,AAGGCCCAGCAAGAATTTGCTGCTGGTGTCTTCTCCAACCCTGCGGTGCG,"Exon (Scamp3-201/Scamp3, exon 9 of 9)",3,89177473,89182765,5293,1,Scamp3-201,4865,Fam189b-208;Fam189b-201;Fam189b-209;Fam189b-206;Fam189b-202;Fam189b-203;Fam189b-205;Fam189b-207;Scamp3-201;Scamp3-203;Scamp3-206;Scamp3-202;Scamp3-208;Scamp3-207;Scamp3-205;Scamp3-204,Fam189b;Fam189b;Fam189b;Fam189b;Fam189b;Fam189b;Fam189b;Fam189b;Scamp3;Scamp3;Scamp3;Scamp3;Scamp3;Scamp3;Scamp3;Scamp3,-756;-816;-817;-1193;-1246;-1254;-1842;-4989;0;0;4842;0;4807;4801;4717;4580,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,24045,ENSMUSG00000028049,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19968,cg17468331,0.0000917,0.00000891,10.28965534,1.48E-21,gain,yes,-0.00000533,0.0000151,-0.351715462,0.725290613,neg,ns,0.007427091,0.004437043,1.673882901,0.095162234,pos,ns,1.021535371,-0.000135143,0.00015259,-0.885665973,0.376484033,neg,ns,0.456180503,Etv4,Etv4_Intergenic_upstream,11,101814775,101814824,101814775,101814776,50,+,CGGTTCTATTAGGCAAGGCCGCAGACTTCCTAGGTACTGTCTGGGGTCTG,Distal Intergenic,11,101769747,101785371,15625,2,Etv4-202,-29404,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,5,18612,ENSMUSG00000017724,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
19148,cg08060651,-0.00000166,0.00000347,-0.478422934,0.632686444,loss,ns,-0.00000207,0.00000589,-0.351686267,0.725312488,neg,ns,0.000230839,0.001726625,0.133693748,0.893731498,pos,ns,0.048792936,-0.00000982,0.0000594,-0.165329844,0.868792132,neg,ns,0.900710455,Ddx23,Ddx23_Exon,15,98650973,98651022,98651021,98651022,50,-,GACTGCTCTCGCTTCTGCTGCTTGAGGTCAATGCCTGCAATGAAGCCTCG,"Exon (Ddx23-201/Ddx23, exon 9 of 17)",15,98645134,98662889,17756,2,Ddx23-201,11867,Ddx23-201;Ddx23-204;Ddx23-203;Ddx23-205,Ddx23;Ddx23;Ddx23;Ddx23,0;0;0;11862,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,74351,ENSMUSG00000003360,conserved gene but different region,15,98650708,98651116,409,*,409,20,0.550122249,0.664284554,0.048899756,1.18E-09,CpGisland,TRUE,U10,Tr-S
17209,cg07597118,-0.0000056,0.00000386,-1.45211673,0.147480482,loss,ns,-0.0000023,0.00000655,-0.35162006,0.725362097,neg,ns,-0.000297064,0.00191918,-0.154786731,0.877090181,neg,ns,0.056955751,-0.000157087,0.000066,-2.380085339,0.017913008,neg,ns,0.911326956,Nrxn3,Nrxn3_Intron,12,89191170,89191219,89191170,89191171,50,+,CGCTATGGTAAACAAACTACATTGTCTGGTAGATATCATTCTTATTGTCT,"Intron (Nrxn3-209/Nrxn3, intron 5 of 7)",12,88722876,89261571,538696,1,Nrxn3-209,468294,Nrxn3-209;Nrxn3-213;Nrxn3-208;Nrxn3-205;Nrxn3-211;Nrxn3-201;Nrxn3-210,Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,39,18191,ENSMUSG00000066392,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11695,cg27204776,-0.0000369,0.0000129,-2.853124935,0.004620342,loss,ns,0.00000772,0.0000219,0.351606797,0.725372036,pos,ns,-0.007255522,0.006430354,-1.128323821,0.26005565,neg,ns,0.584933707,0.0000388,0.000221139,0.175307099,0.860952782,pos,ns,0.165860629,Carf,Carf_fiveUTR,1,60098272,60098321,60098320,60098321,50,+,CTGGTCTCCATGGCGGGGCCTCGGAGCCAAGACGAGGTTGAGTAGACTCG,Promoter (<=1kb),1,60098247,60151032,52786,1,Carf-203,25,Carf-203;Carf-205;Carf-202;Carf-210;Wdr12-201;Wdr12-203;Wdr12-202;Wdr12-207;Wdr12-206;Wdr12-204,Carf;Carf;Carf;Carf;Wdr12;Wdr12;Wdr12;Wdr12;Wdr12;Wdr12,0;0;0;-2925;-364;-126;0;-147;-137;-575,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,1,241066,ENSMUSG00000026017,mapped to different genes,1,60098088,60098816,729,*,729,71,0.68175583,0.839153697,0.09739369,3.94E-53,CpGisland,TRUE,U1,Pr-A
5881,cg04745561,0.00000134,0.00000255,0.523454382,0.601032067,gain,ns,-0.00000152,0.00000434,-0.351502295,0.725450342,neg,ns,-0.0000593,0.001270995,-0.046676787,0.962800887,neg,ns,0.016463519,-0.00000741,0.0000437,-0.16960059,0.865434879,neg,ns,0.941164859,Bag6,Bag6_Exon,17,35142550,35142599,35142550,35142551,50,+,CGCCCACCAGATCACTCATCAGGCCATGGTGGCAGCTGTTGCCTCCGCGG,"Exon (Bag6-210/Bag6, exon 12 of 12)",17,35135178,35147305,12128,1,Bag6-202,7372,Bag6-202;Bag6-201;Bag6-203;Bag6-209;Bag6-210;Bag6-212;Bag6-214;Bag6-213;Bag6-211;Bag6-205;Bag6-206;Bag6-208;Bag6-216;Bag6-215;Bag6-207;Bag6-204,Bag6;Bag6;Bag6;Bag6;Bag6;Bag6;Bag6;Bag6;Bag6;Bag6;Bag6;Bag6;Bag6;Bag6;Bag6;Bag6,0;0;0;7322;0;7040;6832;0;0;6427;3977;2319;1391;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,224727,ENSMUSG00000024392,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15476,cg02170386,0.0000664,0.0000069,9.619679165,2.44E-19,gain,yes,-0.00000412,0.0000117,-0.351487894,0.725461133,neg,ns,0.007847355,0.003435919,2.283916922,0.023052412,pos,ns,1.637283635,-0.00024462,0.000118161,-2.070228138,0.039258736,neg,ns,0.08612893,Smoc1,Smoc1_Intergenic_upstream,12,80998909,80998958,80998957,80998958,50,+,GCGGACACGGATAACTGCATTAGATGCACTCAGCTCTTTTCAATAAAACG,Distal Intergenic,12,81026808,81186414,159607,1,Smoc1-202,-27850,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,3,64075,ENSMUSG00000021136,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13541,cg20204146,-0.0000294,0.0000129,-2.284600279,0.023011767,loss,ns,-0.00000769,0.0000219,-0.351278933,0.725617722,neg,ns,-0.00273212,0.006410008,-0.426227229,0.670238081,neg,ns,0.1737709,0.000166344,0.00022044,0.754599644,0.451062092,pos,ns,0.713598249,Gm10172,Gm10172_Exon,7,71224371,71224420,71224371,71224372,50,+,CGTCCGCCCTGAGTACCTAATAAATCCTGCCTGAGCTTTTTATTGAGGAG,"Exon (6030442E23Rik-201/6030442E23Rik-201, exon 2 of 2)",7,71332363,71332921,559,2,Gm10172-201,108501,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,31,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22653,cg11385236,0.00000612,0.0000051,1.201932443,0.230307056,gain,ns,-0.00000304,0.00000866,-0.351176588,0.725694421,neg,ns,-0.000133311,0.002535859,-0.052570546,0.958107945,neg,ns,0.018585559,-0.000127517,0.0000872,-1.462216207,0.144694975,neg,ns,0.911467277,Sox6,Sox6_Intron,7,115609934,115609983,115609934,115609935,50,+,CGTGCTGTAAAATCTGCATAAACTCAGCATATTGTTATCCCCATGTGTGC,"Intron (Sox6-210/Sox6, intron 7 of 15)",7,115470872,116031047,560176,2,Sox6-210,421064,Sox6-210;Sox6-201;Sox6-202;Sox6-204;Sox6-205;Sox6-203;Sox6-212;Sox6-206;Sox6-209;Sox6-214;Sox6-207;Sox6-213,Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,37,57,20679,ENSMUSG00000051910,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15112,cg16660996,0.000000348,0.00000116,0.300772779,0.763789388,gain,ns,0.00000069,0.00000196,0.351028969,0.725805054,pos,ns,-0.001295428,0.000575531,-2.250839798,0.025096157,neg,ns,1.600392772,0.0000389,0.0000198,1.967638455,0.050000865,pos,ns,0.983344046,Zfp827,Zfp827_threeUTR,8,79189898,79189947,79189898,79189899,50,-,CGGGGAGCGGCCCTTCCACTGTGACCAGTGCAGCTACAGCTGCAAGCGCA,3' UTR,8,79028437,79193743,165307,1,Zfp827-202,161461,Zfp827-202;Zfp827-203;Zfp827-209;Zfp827-206;Zfp827-205;Zfp827-207;Zfp827-204,Zfp827;Zfp827;Zfp827;Zfp827;Zfp827;Zfp827;Zfp827,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,threeUTR,12,28,622675,ENSMUSG00000071064,conserved gene and region,8,79189795,79190007,213,*,213,16,0.61971831,0.797192983,0.075117371,1.49E-10,CpGisland,TRUE,U11,Tr-P
10323,cg06795284,-0.00000241,0.00000729,-0.330045099,0.741588806,loss,ns,0.00000435,0.0000124,0.351000378,0.725826482,pos,ns,-0.004959811,0.003627968,-1.367104315,0.172583109,neg,ns,0.763001713,-0.0000442,0.000124766,-0.354418857,0.723265969,neg,ns,0.855847898,Gm8572,Gm8572_Intergenic_downstream,18,53028494,53028543,53028494,53028495,50,-,CGCTTATTTGTGTGTGTGCTTTACTCAGTCAATCAAATATAATTGACACC,Distal Intergenic,18,52952549,52953101,553,1,Gm8572-201,75994,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,667317,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3791,cg11939940,-0.0000155,0.00000431,-3.601234369,0.000368691,loss,ns,0.00000257,0.00000732,0.350984111,0.725838673,pos,ns,0.00043542,0.002143985,0.203089114,0.839198616,pos,ns,0.076135241,-0.0000622,0.0000737,-0.843629432,0.399527011,neg,ns,0.072980892,Zmiz1,Zmiz1_Exon,14,25459172,25459221,25459172,25459173,50,+,CGGCGCGGGGCCCTTTGGAAATAGAATAGCCAATGTAATCTGACACTTCA,Promoter (<=1kb),14,25459185,25538492,79308,1,Zmiz1-206,0,Zmiz1-206;Zmiz1-208;Zmiz1-201;Zmiz1-202,Zmiz1;Zmiz1;Zmiz1;Zmiz1,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,15,328365,ENSMUSG00000007817,conserved gene but different region,14,25458848,25459178,331,*,331,32,0.628398792,1.139537386,0.096676737,3.78E-24,CpGisland,TRUE,NA,NRS
26953,cg01899753,0.00000214,0.00000627,0.340931657,0.733385977,gain,ns,-0.00000374,0.0000107,-0.350971818,0.725847887,neg,ns,0.007339989,0.003121727,2.351259162,0.019335842,pos,ns,1.713636913,-0.000238914,0.000107356,-2.22543465,0.026771196,neg,ns,0.879467794,Xpr1,Xpr1_Exon,1,155283372,155283421,155283372,155283373,50,+,CGGAATTCACCACAGTTATTCAGATGTTCATTCTCCAGGCGGAAGAAGTT,"Exon (Xpr1-201/Xpr1, exon 14 of 15)",1,155275701,155417329,141629,2,Xpr1-201,133908,Xpr1-201;Xpr1-203;Xpr1-205;Xpr1-202,Xpr1;Xpr1;Xpr1;Xpr1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,19775,ENSMUSG00000026469,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22849,cg04303024,-0.00000069,0.000000632,-1.092417291,0.275497956,loss,ns,-0.000000377,0.00000107,-0.350905915,0.72589728,neg,ns,0.000086,0.000314393,0.273558925,0.784605772,pos,ns,0.105348501,-0.0000137,0.0000108,-1.269922433,0.20506466,neg,ns,0.011683628,Unk,Unk_Exon,11,116030437,116030486,116030437,116030438,50,-,CGGCCGCTACCGCTCAGGTGCTGCAGGCACAGCCCGAGAAACCGCAGCAC,Promoter (<=1kb),11,116030322,116061214,30893,1,Unk-201,115,H3f3b-202;Unk-201;Unk-202;Unk-207,H3f3b;Unk;Unk;Unk,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,217331,ENSMUSG00000020770,mapped to different genes,11,116030277,116031081,805,*,805,67,0.626086957,0.849651066,0.083229814,2.24E-45,CpGisland,TRUE,U1,Pr-A
9451,cg18186704,0.0000395,0.00000506,7.80405862,9.27E-14,gain,yes,-0.00000302,0.0000086,-0.350826935,0.725956476,neg,ns,0.002428698,0.002518322,0.964410947,0.335591645,pos,ns,0.47418886,0.0000341,0.0000866,0.393185191,0.694452963,pos,ns,0.103501246,Csmd3,Csmd3_Exon,15,48791771,48791820,48791819,48791820,50,-,GTAAATCCACTTTTAATCCCCATTTTCTTCATCAGGATGAAGTCTAGGCG,Promoter (<=1kb),15,47580637,48791933,1211297,2,Csmd3-204,113,Csmd3-204;Csmd3-201;Csmd3-209;Csmd3-205;Csmd3-203,Csmd3;Csmd3;Csmd3;Csmd3;Csmd3,0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,16,239420,ENSMUSG00000022311,conserved gene and region,15,48791819,48792094,276,*,276,17,0.550724638,0.814583333,0.061594203,8.17E-10,CpGisland,TRUE,U13,Hc-P
14071,cg04028333,0.000018,0.0000031,5.805873799,1.58E-08,gain,yes,-0.00000185,0.00000527,-0.350771471,0.725998048,neg,ns,-0.001846202,0.00154307,-1.196447537,0.232436207,neg,ns,0.633696221,0.000112338,0.0000531,2.116946243,0.035060722,pos,ns,0.0553838,Evx2,Evx2_Intergenic_downstream,2,74649235,74649284,74649235,74649236,50,+,CGCTGACCCGCTATTCAAAATGTTATTTGAGAACCATCACAATGCGTAAA,Distal Intergenic,2,74655616,74659419,3804,2,Evx2-202,10135,Evx2-201,Evx2,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,35,14029,ENSMUSG00000001815,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
18783,cg19965683,-0.00000459,0.0000038,-1.206966614,0.22836517,loss,ns,0.00000227,0.00000646,0.350671972,0.726072627,pos,ns,-0.000146252,0.001893774,-0.077227734,0.938492199,neg,ns,0.027569333,-0.0000686,0.0000651,-1.053751633,0.292817257,neg,ns,0.94547593,Gm45247,Gm45247_Promoter,8,97337446,97337495,97337446,97337447,50,-,CGTTAAACCAGGTTGCAAGCTGCTTATTCTTCAAAATGAAGCTTTATTTT,Promoter (7-8kb),8,97344676,97344984,309,1,Gm45247-201,-7230,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1381,cg10182925,-0.0000297,0.00000686,-4.334718401,0.0000198,loss,ns,-0.00000409,0.0000117,-0.3506421,0.726095018,neg,ns,-0.006699914,0.003413849,-1.962569015,0.050590387,neg,ns,1.295932003,-0.000046,0.000117402,-0.391867765,0.69542517,neg,ns,0.883662536,Cadps,Cadps_Intron,14,12507377,12507426,12507425,12507426,50,+,TTAGGAACTCAGTCGAAGACACAGAAAAATTTATGTATCCCTGCTGGTCG,"Intron (Cadps-210/Cadps, intron 12 of 28)",14,12372563,12823053,450491,2,Cadps-210,315627,Cadps-210;Cadps-202;Cadps-203;Cadps-204;Cadps-201;Cadps-206,Cadps;Cadps;Cadps;Cadps;Cadps;Cadps,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,34,27062,ENSMUSG00000054423,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19686,cg19357219,-0.000000732,0.00000219,-0.335221555,0.737684693,loss,ns,0.0000013,0.00000371,0.35053784,0.72617317,pos,ns,0.00063225,0.00108753,0.581363476,0.561417972,pos,ns,0.250713689,-0.0000415,0.0000374,-1.11042548,0.267676285,neg,ns,0.958559649,Rab6a,Rab6a_Exon,7,100629713,100629762,100629761,100629762,50,+,CCTCATTCCCAGTTACATCCGTGATTCTGCTGCAGCTGTAGTAGTTTACG,"Exon (Rab6a-203/Rab6a, exon 4 of 8)",7,100607410,100641268,33859,1,Rab6a-203,22303,Gm14382-201;Rab6a-203;Rab6a-201;Rab6a-202;Rab6a-204,Gm14382;Rab6a;Rab6a;Rab6a;Rab6a,5195;0;0;0;-4586,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,19346,ENSMUSG00000030704,conserved gene and region,7,100629656,100629905,250,*,250,12,0.488,0.809716599,0.048,0.0000058,CpGisland,TRUE,NA,NRS
19089,cg12062853,0.00000257,0.00000116,2.213031467,0.027623644,gain,ns,0.000000692,0.00000198,0.350368681,0.726299974,pos,ns,0.000947657,0.000578998,1.636718917,0.102703957,pos,ns,0.988412823,-0.0000281,0.0000199,-1.410924629,0.159269575,neg,ns,0.036239401,Ppp1r1b,Ppp1r1b_Promoter,11,98339304,98339353,98339352,98339353,50,+,ATTTTCATTCTGCATAAAATTTTAATGGTCTCTCTGGCTGATCCGGGACG,Promoter (9-10kb),11,98348404,98357796,9393,1,Ppp1r1b-201,-9051,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,16,16,19049,ENSMUSG00000061718,conserved gene and region,11,98339347,98339463,117,*,117,11,0.717948718,0.783323189,0.094017094,2.09E-08,CpGisland,TRUE,U3,Pr-B
14104,cg18303028,0.00000592,0.00000178,3.318400307,0.00101318,gain,ns,0.00000106,0.00000303,0.350353168,0.726311604,pos,ns,-0.000592108,0.000888297,-0.666564667,0.505546018,neg,ns,0.296239306,0.0000675,0.0000305,2.209700454,0.027856548,pos,ns,0.044347781,Hoxd11,Hoxd11_Exon,2,74679569,74679618,74679617,74679618,50,-,ACGAGAGCTGCCAGACAGTGTCTGTTCACGTTCTCCAGATACCAGGGGCG,Promoter (<=1kb),2,74679557,74687016,7460,1,Hoxd11-201,12,Hoxd11-201;Hoxd11-202;Hoxd12-201,Hoxd11;Hoxd11;Hoxd12,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,14,15431,ENSMUSG00000042499,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17120,cg13279679,-0.0000613,0.00000621,-9.871709845,3.65E-20,loss,yes,0.0000037,0.0000106,0.350169115,0.726449582,pos,ns,0.007950862,0.003091561,2.571795008,0.010582994,pos,ns,1.975391432,-0.000159724,0.000106319,-1.502314231,0.134033915,neg,ns,0.814502235,Lmna,Lmna_Intron,3,88490174,88490223,88490222,88490223,50,+,AAAAGCTAAAAATAAAGTCAAAACCCAGCTCAGGTTTTGGCTGCCATCCG,"Intron (Lmna-201/Lmna, intron 1 of 11)",3,88481148,88503335,22188,2,Lmna-201,13112,Lmna-201;Lmna-204;Lmna-203;Lmna-202,Lmna;Lmna;Lmna;Lmna,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,16905,ENSMUSG00000028063,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8424,cg20177310,-0.000005,0.00000384,-1.300805697,0.194291065,loss,ns,-0.00000229,0.00000653,-0.350144863,0.726467763,neg,ns,-0.004683095,0.001911921,-2.449419139,0.014861835,neg,ns,1.827927573,0.0000997,0.0000658,1.516834623,0.130327499,pos,ns,0.064174282,Zeb2,Zeb2_fiveUTR,2,45111028,45111077,45111028,45111029,50,+,CGAGAGAGGCGCTGCATTTTTTCAGTTGAAACTGTCAAAACTTGGAGAAG,Promoter (<=1kb),2,45008598,45111076,102479,2,Zeb2-208,0,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219;Zeb2-211;Zeb2-210;Zeb2-205;Zeb2-223;Zeb2-217;Zeb2-225;Zeb2-204;Zeb2-206,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;-952;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,15,158,24136,ENSMUSG00000026872,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
16297,cg24532363,0.0000034,0.00000509,0.667551405,0.504916619,gain,ns,0.00000303,0.00000865,0.349805454,0.726722233,pos,ns,-0.004241976,0.002534149,-1.673925331,0.095153886,neg,ns,1.021573472,0.00014378,0.0000871,1.649818537,0.099992892,pos,ns,0.88732712,Mrm1,Mrm1_Intergenic_downstream,11,84723022,84723071,84723022,84723023,50,-,CGCTGCCTTCAGAGGCTCGCTGAGAACCTGTCACTCTCCAATGTCCCGAG,Distal Intergenic,11,84814743,84815390,648,2,Mrm1-203,92368,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,37,42,217038,ENSMUSG00000018405,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5193,cg09861808,-0.0000129,0.00000661,-1.94733948,0.052396721,loss,ns,-0.00000393,0.0000112,-0.349797109,0.72672849,neg,ns,-0.002589167,0.003291386,-0.786649315,0.432088123,neg,ns,0.364427671,0.000036,0.00011319,0.318343927,0.750438426,pos,ns,0.104297237,Ets1,Ets1_Intron,9,32672531,32672580,32672531,32672532,50,+,CGAGCACACAAAAAGAAAAACACCAGCAGATTTTTTATTTCAGAGAGTAA,"Intron (Ets1-203/Ets1, intron 3 of 3)",9,32636221,32729830,93610,1,Ets1-203,36310,Ets1-203;Ets1-207,Ets1;Ets1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,8,23871,ENSMUSG00000032035,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
3619,cg19854621,-0.00000188,0.0000016,-1.175173088,0.240827298,loss,ns,-0.000000948,0.00000271,-0.349782458,0.726739476,neg,ns,-0.000607352,0.000794338,-0.764601473,0.445090519,neg,ns,0.351551656,0.00000802,0.0000273,0.293699946,0.76918373,pos,ns,0.04481418,BC005537,BC005537_Exon,13,24803399,24803448,24803399,24803400,50,-,CGGAAGAAACAAGCTCTGAACAGACTACGTGCTCAGCTTAGAAAGAAAAA,"Exon (BC005537-201/BC005537, exon 1 of 5)",13,24801657,24816197,14541,1,BC005537-201,1742,BC005537-201;BC005537-202,BC005537;BC005537,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,79555,ENSMUSG00000019132,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6355,cg14489002,-0.0000156,0.00000359,-4.339269566,0.0000194,loss,ns,0.00000213,0.00000609,0.34976883,0.726749694,pos,ns,-0.003977207,0.001784422,-2.228848744,0.026540596,neg,ns,1.576089335,0.000109421,0.0000614,1.783088373,0.075550276,pos,ns,0.913407889,Pknox2,Pknox2_Intron,9,36974039,36974088,36974039,36974040,50,+,CGGTGTCAACCTGTCACTGATTTCATGTGACTCTGTGGATTTATCTAAAG,"Intron (Pknox2-207/Pknox2, intron 1 of 10)",9,36890982,37083309,192328,2,Pknox2-207,109221,Pknox2-207;Pknox2-201;Pknox2-202;Pknox2-203;Pknox2-206;Pknox2-204;Pknox2-205;Pknox2-208;Pknox2-210;Pknox2-209;Pknox2-212,Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,47,208076,ENSMUSG00000035934,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21174,cg20974359,-0.0000198,0.00000905,-2.186103891,0.029555648,loss,ns,0.00000538,0.0000154,0.349719308,0.726786825,pos,ns,-0.008366682,0.004506733,-1.856484963,0.064333049,neg,ns,1.191565863,0.000108936,0.000154986,0.702877007,0.48265989,pos,ns,0.76138983,Gm17053,Gm17053_Intergenic_upstream,12,106626961,106627010,106627009,106627010,50,-,TCTGATTCTTGTTAGAATTGTTTATCACCCTGACAGGCCAGACTCGGACG,Distal Intergenic,12,106544837,106546326,1490,2,Gm17053-201,-80684,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,6,108167962,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U14,Hc-H
20136,cg10466667,-0.0000448,0.00000643,-6.968824382,1.93E-11,loss,yes,-0.00000382,0.0000109,-0.349623989,0.726858298,neg,ns,-0.00116394,0.003202363,-0.36346283,0.716506907,neg,ns,0.144779619,-0.000206687,0.000110129,-1.876769441,0.061488851,neg,ns,0.645468777,Calcoco1,Calcoco1_Intergenic_downstream,15,102705885,102705934,102705885,102705886,50,+,CGTATTTATTAATAGTCTTAATACGGGAAGCAATAAAGGAAGAGAGGGAT,Downstream (<1kb),15,102706972,102709902,2931,2,Calcoco1-203,3968,Calcoco1-201;Calcoco1-203;Calcoco1-205;Calcoco1-204;Calcoco1-209;Calcoco1-207;Calcoco1-202,Calcoco1;Calcoco1;Calcoco1;Calcoco1;Calcoco1;Calcoco1;Calcoco1,0;0;0;0;4126;13782;9862,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,8,29,67488,ENSMUSG00000023055,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13983,cg21987032,-0.00000291,0.00000463,-0.628404653,0.530201592,loss,ns,-0.00000275,0.00000786,-0.349595337,0.726879782,neg,ns,-0.004665544,0.002302618,-2.02619098,0.043601254,neg,ns,1.360501022,0.0000918,0.0000792,1.159355954,0.247203334,pos,ns,0.876885237,Mecp2,Mecp2_threeUTR,X,74034286,74034335,74034286,74034287,50,+,CGGAGCTTCGTGGGAACCCTATGTGCTGAGCCCACTTTAAAACAAGCGCA,3' UTR,20,74026592,74085669,59078,2,Mecp2-202,51334,Mecp2-202;Mecp2-205;Mecp2-201;Mecp2-203;Mecp2-204,Mecp2;Mecp2;Mecp2;Mecp2;Mecp2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,10,17257,ENSMUSG00000031393,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9102,cg01307652,-0.0000026,0.00000167,-1.560318101,0.119704993,loss,ns,0.000000989,0.00000283,0.349461724,0.726979973,pos,ns,0.000322929,0.000829416,0.389344427,0.697288698,pos,ns,0.156587374,-0.00000891,0.0000285,-0.312266002,0.755048312,neg,ns,0.052858334,Samd4,Samd4_fiveUTR,14,46882893,46882942,46882893,46882894,50,+,CGGGCGCTCCCTGCCAAGCCCATGATGTAATGGTGTATGTTAATCAGTAG,Promoter (<=1kb),14,46882854,47103150,220297,1,Samd4-201,39,Samd4-201;Samd4-211;Samd4-202;Samd4-208;Samd4-206,Samd4;Samd4;Samd4;Samd4;Samd4,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,16,74480,ENSMUSG00000021838,conserved gene but different region,14,46882545,46882898,354,*,354,34,0.700564972,0.854829546,0.096045198,1.59E-25,CpGisland,TRUE,U3,Pr-B
8572,cg14380289,-0.00000144,0.00000342,-0.42003786,0.674748773,loss,ns,0.00000203,0.00000581,0.3493851,0.727037433,pos,ns,-0.001012276,0.001702745,-0.594496263,0.55261387,neg,ns,0.257578219,0.0000416,0.0000586,0.709732894,0.478403284,pos,ns,0.907525444,Gm13475,Gm13475_Intergenic_downstream,2,45356942,45356991,45356942,45356943,50,+,CGTGCTTCATGCATCTTGCTCAGAGAGGAATTTCTGCCATTTAGCCCCCT,Distal Intergenic,2,45329232,45329465,234,1,Gm13475-201,27710,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,21,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14711,cg26773629,0.0000726,0.0000132,5.512597437,7.45E-08,gain,yes,-0.00000781,0.0000224,-0.349215767,0.727164419,neg,ns,0.020748027,0.006553357,3.166014905,0.001699102,pos,ns,2.769780584,-0.000519007,0.000225369,-2.302918168,0.02194532,neg,ns,0.496403646,Gm21816,Gm21816_Intron,16,77421528,77421577,77421576,77421577,50,-,TAAGCTATCTATTTCACACATGCAACGACAGAAGGTTCGATATTCATTCG,"Intron (Mir99ahg-207/Mir99ahg-207, intron 4 of 7)",16,77400847,77401208,362,1,Gm21816-201,20730,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,8,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
15739,cg24230340,0.0000658,0.00000857,7.672837395,2.20E-13,gain,yes,0.00000509,0.0000146,0.349169044,0.727199459,pos,ns,-0.00141272,0.004267113,-0.331071552,0.740814114,neg,ns,0.130290752,0.000194493,0.000146746,1.325372309,0.186023642,pos,ns,0.273598657,Htra2,Htra2_Exon,6,83053432,83053481,83053480,83053481,50,-,TTCTGCAGTGCAAAGGGACTTCCCATGGCAACAACAAACTCCCCTTGCCG,Promoter (<=1kb),6,83051266,83054442,3177,2,Htra2-202,961,Aup1-201;Aup1-215;Aup1-217;Aup1-210;Aup1-209;Aup1-206;Aup1-212;Aup1-214;Aup1-208;Aup1-203;Aup1-207;Aup1-216;Aup1-204;Aup1-211;Aup1-202;Aup1-205;Aup1-213;Dqx1-201;Dqx1-202;Htra2-202;Htra2-201;Htra2-203;Htra2-204;Htra2-209;Htra2-205;Htra2-206;Htra2-207;Htra2-208;Htra2-211;Htra2-210;Loxl3-201;Loxl3-202;Loxl3-204,Aup1;Aup1;Aup1;Aup1;Aup1;Aup1;Aup1;Aup1;Aup1;Aup1;Aup1;Aup1;Aup1;Aup1;Aup1;Aup1;Aup1;Dqx1;Dqx1;Htra2;Htra2;Htra2;Htra2;Htra2;Htra2;Htra2;Htra2;Htra2;Htra2;Htra2;Loxl3;Loxl3;Loxl3,-1040;-1165;-1233;-1248;-1250;-1250;-1255;-1257;-1267;-1274;-1910;-2233;-2929;-3031;-3367;-3372;-3740;-4363;-4616;0;0;0;0;0;0;0;0;0;0;0;0;0;3564,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,64704,ENSMUSG00000068329,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7142,cg19433836,0.00000144,0.00000549,0.262801652,0.792878031,gain,ns,-0.00000326,0.00000933,-0.349127793,0.727230395,neg,ns,-0.000971786,0.002734149,-0.355425275,0.722512733,neg,ns,0.141154495,-0.000140925,0.000094,-1.49876507,0.134952202,neg,ns,0.851015046,Gria3,Gria3_Intron,X,41406495,41406544,41406543,41406544,50,-,GCCTCTGCAGTGTCAGCTCATTAGCACACAGATCTCATATTCCCTCTCCG,"Intron (Gria3-205/Gria3, intron 3 of 11)",20,41400854,41613099,212246,1,Gria3-205,5641,Gria3-205;Gria3-202;Gria3-201;Gria3-208;Gria3-206;Gria3-207;Gria3-209;Gria3-203,Gria3;Gria3;Gria3;Gria3;Gria3;Gria3;Gria3;Gria3,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,26,53623,ENSMUSG00000001986,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17767,cg22390917,0.00000145,0.0000011,1.316423464,0.189004416,gain,ns,-0.000000651,0.00000186,-0.349029434,0.727304163,neg,ns,-0.0000168,0.000546341,-0.030752992,0.975486319,neg,ns,0.010778817,-0.0000243,0.0000188,-1.294439372,0.196477087,neg,ns,0.971888464,Son,Son_Exon,16,91657322,91657371,91657370,91657371,50,+,CTGATGTTAGCATCTAGACGTTCTATGATGATGTCCTATGCTGCAGAACG,"Exon (Son-203/Son, exon 3 of 12)",16,91647506,91679207,31702,1,Son-203,9816,Son-203;Son-204;Son-202;Son-208;Son-201;Son-205;Son-212,Son;Son;Son;Son;Son;Son;Son,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,31,20658,ENSMUSG00000022961,conserved gene and region,16,91657340,91657713,374,*,374,19,0.483957219,0.867855398,0.050802139,1.77E-09,CpGisland,TRUE,U10,Tr-S
12494,cg02830912,0.00000457,0.00000493,0.928504615,0.353868263,gain,ns,0.00000292,0.00000837,0.348977065,0.727343439,pos,ns,-0.001274805,0.002452295,-0.519841553,0.603545013,neg,ns,0.219290334,0.000023,0.0000843,0.27321401,0.784870636,pos,ns,0.903464256,Grid2,Grid2_Exon,6,64666136,64666185,64666136,64666137,50,+,CGAACTGGCCCTTTTAGGCACAGGGCACCTAATGGGGGCTTTTTCAGGAG,"Exon (Grid2-201/Grid2, exon 16 of 16)",6,63256027,64668285,1412259,1,Grid2-201,1410109,Grid2-201;Grid2-207,Grid2;Grid2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,10,14804,ENSMUSG00000071424,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6043,cg26640485,0.000000596,0.000000471,1.266940799,0.206127459,gain,ns,-0.000000279,0.0000008,-0.348968853,0.727349599,neg,ns,0.000146498,0.000234312,0.625226805,0.532282176,pos,ns,0.273858077,-0.00000309,0.00000806,-0.383757341,0.701421374,neg,ns,0.013265618,Cxxc5,Cxxc5_Intron,18,35889788,35889837,35889836,35889837,50,+,GCGTCTGGCATCCGGAGTCTCCCGGGATCGAAAATAATTTGGGCAAAGCG,"Intron (Gm36315-201/Gm36315-201, intron 1 of 1)",18,35854738,35858619,3882,1,Cxxc5-205,35050,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,49,67393,ENSMUSG00000046668,conserved gene and region,18,35889630,35890054,425,*,425,43,0.656470588,0.954108802,0.101176471,3.55E-33,CpGisland,TRUE,U3,Pr-B
17840,cg24887531,0.000034,0.00000706,4.815474024,0.0000023,gain,ns,-0.00000419,0.000012,-0.348891404,0.727407687,neg,ns,-0.004900606,0.003515302,-1.394078365,0.164292347,neg,ns,0.784382667,0.000160665,0.000120891,1.329004791,0.184823711,pos,ns,0.761486304,Irx3,Irx3_Intron,8,92026710,92026759,92026710,92026711,50,-,CGTCCTAATGAAATTCATTTGCAGTACAAAAATTTGAGTGAATCCAACAA,"Intron (Gm28516-201/Gm28516-201, intron 1 of 3)",8,91798525,91802067,3543,2,Irx3-202,-224692,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,36,16373,ENSMUSG00000031734,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18915,cg09647169,0.0000042,0.00000722,0.581321224,0.561446407,gain,ns,-0.00000428,0.0000123,-0.348857013,0.727433481,neg,ns,-0.000835308,0.003595617,-0.232312922,0.816448268,neg,ns,0.088071328,-0.000161943,0.000123653,-1.309655278,0.191282229,neg,ns,0.857679498,Dach1,Dach1_Intron,14,97891491,97891540,97891539,97891540,50,-,TGCTTCATTTATTATGATAGCTTCCCCATGTAAATTGTGCTGACTGCTCG,"Intron (Dach1-201/Dach1, intron 6 of 10)",14,97786853,98169543,382691,2,Dach1-201,278003,Dach1-201;Dach1-202;Dach1-203,Dach1;Dach1;Dach1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,76,13134,ENSMUSG00000055639,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11197,cg03326917,0.0000378,0.00000896,4.222377048,0.0000318,gain,ns,0.00000531,0.0000152,0.348848296,0.727440019,pos,ns,0.016151475,0.004461305,3.620347325,0.000343523,pos,ns,3.464043621,-0.000298574,0.000153424,-1.946072086,0.052549456,neg,ns,0.044190854,Satb2,Satb2_Exon,1,56969691,56969740,56969691,56969692,50,+,CGGGCTCCCATGGGGCTGCCGTTCTGCTCCAGCCGGGCCACCTTCACTGG,"Exon (Satb2-201/Satb2, exon 2 of 10)",1,56793981,56972502,178522,2,Satb2-201,2762,Satb2-201;Satb2-202;Satb2-205;Satb2-203;Satb2-204,Satb2;Satb2;Satb2;Satb2;Satb2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,33,212712,ENSMUSG00000038331,conserved gene and region,1,56969620,56969894,275,*,275,29,0.705454546,0.850848181,0.105454546,4.32E-23,CpGisland,TRUE,U3,Pr-B
20280,cg14123622,-0.00000523,0.00000151,-3.452137411,0.000633419,loss,ns,0.000000897,0.00000257,0.348797694,0.727477973,pos,ns,0.000569557,0.000753477,0.75590504,0.450280132,pos,ns,0.346517215,0.0000115,0.0000259,0.445378113,0.656357379,pos,ns,0.047613273,Kctd12,Kctd12_Exon,14,102982185,102982234,102982185,102982186,50,+,CGTCCCGGTCCAGAAAGAAGCGGCCTTTGCTGTCCCGGGCCAGCTCCTGC,Promoter (<=1kb),14,102976581,102982637,6057,2,Kctd12-202,403,Kctd12-202;Kctd12-201,Kctd12;Kctd12,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,5,239217,ENSMUSG00000098557,conserved gene and region,14,102981706,102983032,1327,*,1327,169,0.7279578,0.96141282,0.127354936,1.57E-147,CpGisland,TRUE,U1,Pr-A
5970,cg24369082,0.0000201,0.00000577,3.482678352,0.000567805,gain,ns,0.00000342,0.00000981,0.34876982,0.72749888,pos,ns,-0.003475476,0.002873541,-1.209474874,0.227402017,neg,ns,0.643205687,-0.0000887,0.0000988,-0.897251967,0.370280761,neg,ns,0.852513858,Slit3,Slit3_Exon,11,35616852,35616901,35616900,35616901,50,+,TAACCATGTGGTGGAACGATGGAAACGGAACATGGTTCTGTCAAGCACCG,"Exon (Mir218-2-201/Mir218-2-201, exon 1 of 1)",11,35121224,35708507,587284,1,Slit3-201,495628,Slit3-201;Slit3-202,Slit3;Slit3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,21,20564,ENSMUSG00000056427,mapped to different genes,11,35616700,35617001,302,*,302,18,0.602649007,0.686363636,0.059602649,4.00E-10,CpGisland,TRUE,U15,NS
10752,cg10587919,0.00000693,0.000000711,9.746193426,9.42E-20,gain,yes,0.000000421,0.00000121,0.348767427,0.727500675,pos,ns,0.000550241,0.00035387,1.554923049,0.120984686,pos,ns,0.917269599,-0.00000809,0.0000122,-0.664887285,0.506616903,neg,ns,0.012652443,Jph4,Jph4_Exon,14,55114994,55115043,55114994,55114995,50,+,CGCCCCTTCAGCCCGCCCAGCCACTCGCCGCGGTACGTCCAGCGGCTCTT,"Exon (Jph4-201/Jph4, exon 2 of 6)",14,55106826,55116935,10110,2,Jph4-201,1892,Jph4-201;Jph4-202;Jph4-203;Jph4-204,Jph4;Jph4;Jph4;Jph4,0;0;-4436;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,11,319984,ENSMUSG00000022208,conserved gene and region,14,55114804,55115549,746,*,746,72,0.71849866,0.747869674,0.096514745,1.44E-53,CpGisland,TRUE,U3,Pr-B
5105,cg09189380,-0.0000228,0.00000751,-3.032731255,0.002628261,loss,ns,0.00000445,0.0000128,0.348542592,0.727669321,pos,ns,-0.009365757,0.003740251,-2.504045271,0.012791754,neg,ns,1.893069896,-0.00000823,0.000128627,-0.06401538,0.948999239,neg,ns,0.830563427,Dnm1,Dnm1_Exon,2,32333153,32333202,32333201,32333202,50,-,CTGCTTTTTCACTGTGGCTTCAAAAGCGAGGTCAGGTGTGAAGAGGCCCG,"Exon (Dnm1-201/Dnm1, exon 10 of 23)",2,32308471,32353263,44793,2,Dnm1-204,20061,Dnm1-204;Dnm1-209;Dnm1-202;Dnm1-201;Dnm1-203;Dnm1-205;Dnm1-214;Dnm1-216;Dnm1-217,Dnm1;Dnm1;Dnm1;Dnm1;Dnm1;Dnm1;Dnm1;Dnm1;Dnm1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,16,13429,ENSMUSG00000026825,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7198,cg05304501,-0.0000295,0.00000847,-3.488165049,0.000556714,loss,ns,-0.00000501,0.0000144,-0.348529019,0.727679503,neg,ns,-0.009880432,0.004214284,-2.344510289,0.019682961,neg,ns,1.705909576,0.000203744,0.000144929,1.405818275,0.160779567,pos,ns,0.687565061,Jade1,Jade1_Exon,3,41604562,41604611,41604610,41604611,50,+,AGTCAAGTTCAAGTCCTATTGCCCAAAGCACAGCTCACATAGGAAACCCG,"Exon (Jade1-201/Jade1, exon 9 of 11)",3,41555731,41616864,61134,1,Jade1-201,48831,Jade1-201;Jade1-202;Jade1-204;Jade1-203;Jade1-206;Jade1-213;Jade1-205;Jade1-208;Jade1-207,Jade1;Jade1;Jade1;Jade1;Jade1;Jade1;Jade1;Jade1;Jade1,0;0;0;0;0;12889;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,16,269424,ENSMUSG00000025764,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13936,cg00382005,-0.00000258,0.00000312,-0.826193095,0.409329973,loss,ns,0.00000185,0.0000053,0.348420524,0.727760889,pos,ns,0.001953644,0.001551437,1.259248104,0.208888065,pos,ns,0.680086373,-0.0000635,0.0000534,-1.190300475,0.234839032,neg,ns,0.930774377,Dcun1d4,Dcun1d4_threeUTR,5,73557918,73557967,73557918,73557919,50,-,CGTCCTCACTGTGATTATGTGTATATTGCTGTTTAAATTTTGTATATGTG,3' UTR,5,73481000,73560794,79795,1,Dcun1d4-202,76918,Dcun1d4-202;Dcun1d4-204;Dcun1d4-203;Dcun1d4-201,Dcun1d4;Dcun1d4;Dcun1d4;Dcun1d4,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,3,100737,ENSMUSG00000051674,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2090,cg15515451,-0.00000387,0.00000218,-1.774684811,0.07693125,loss,ns,0.00000129,0.0000037,0.348400986,0.727775545,pos,ns,0.000918219,0.001085376,0.845991044,0.398210276,pos,ns,0.399887537,-0.00000361,0.0000373,-0.096697515,0.923029098,neg,ns,0.938893338,Skida1,Skida1_Intron,2,18041442,18041491,18041442,18041443,50,-,CGGGCTCGGCAGCTGGAAAGGACTGAACGCCTTGTTTTTGAAACTGTCAA,"Intron (Skida1-205/Skida1, intron 1 of 1)",2,18040676,18044572,3897,2,Skida1-205,3081,A930004D18Rik-201;Skida1-205;Skida1-202;Skida1-201,A930004D18Rik;Skida1;Skida1;Skida1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,31,72668,ENSMUSG00000054074,mapped to different genes,2,18041339,18041449,111,*,111,9,0.720720721,0.726545455,0.081081081,0.00000221,CpGisland,TRUE,U8,En-Pd
12608,cg25603803,0.0000278,0.000017,1.633787093,0.103318695,gain,ns,0.0000101,0.0000289,0.348386615,0.727786326,pos,ns,0.017316329,0.00847456,2.043330757,0.041864905,pos,ns,1.37814989,-0.000464839,0.000291439,-1.594976884,0.111736361,neg,ns,0.171046669,Vgll3,Vgll3_fiveUTR,16,65815628,65815677,65815676,65815677,50,-,CTGCCATGAGTTGTGCGGAGGTGATGTATCACCCCCAGCCTTATGGAGCG,Promoter (<=1kb),16,65815629,65861279,45651,1,Vgll3-202,0,Vgll3-201;Vgll3-202,Vgll3;Vgll3,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,2,73569,ENSMUSG00000091243,conserved gene but different region,16,65815241,65815677,437,*,437,52,0.71395881,0.935644584,0.118993135,4.86E-44,CpGisland,TRUE,U3,Pr-B
25689,cg01711379,0.000047,0.0000127,3.689336465,0.000265482,gain,ns,0.00000754,0.0000216,0.348364939,0.727802586,pos,ns,0.006270145,0.006337702,0.989340452,0.323268167,pos,ns,0.49043706,-0.000110858,0.000217953,-0.508631307,0.611372464,neg,ns,0.589029521,Lmo3,Lmo3_Exon,6,138416436,138416485,138416484,138416485,50,-,AGGATAAGATTAGCTTTAGTGTACAGGGTGGAGCCCACCTCTCCCAAGCG,"Exon (Lmo3-204/Lmo3, exon 3 of 5)",6,138362918,138581968,219051,2,Lmo3-204,165483,Lmo3-204;Lmo3-207;Lmo3-201;Lmo3-206;Lmo3-202;Lmo3-208;Lmo3-203;Lmo3-205,Lmo3;Lmo3;Lmo3;Lmo3;Lmo3;Lmo3;Lmo3;Lmo3,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,38,109593,ENSMUSG00000030226,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24997,cg13000461,0.00000297,0.00000349,0.850280126,0.395825595,gain,ns,-0.00000207,0.00000593,-0.348299778,0.727851469,neg,ns,0.001637418,0.001738296,0.941967508,0.346942749,pos,ns,0.459742184,0.0000204,0.0000598,0.340781278,0.73349908,pos,ns,0.922819598,Srgap2,Srgap2_Exon,1,131296331,131296380,131296379,131296380,50,-,TGCAAGATAAATATCGGCTACATGACCCCCACTGGGACAGCTGGCCCCCG,Promoter (<=1kb),1,131295756,131296380,625,2,Srgap2-208,0,Srgap2-201;Srgap2-205;Srgap2-212;Srgap2-204;Srgap2-210;Srgap2-209;Srgap2-208;Srgap2-203,Srgap2;Srgap2;Srgap2;Srgap2;Srgap2;Srgap2;Srgap2;Srgap2,0;0;0;0;0;0;0;67684,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,14270,ENSMUSG00000026425,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23917,cg06519243,0.0000341,0.00000668,5.11472416,0.000000552,gain,yes,-0.00000395,0.0000113,-0.348219954,0.727911352,neg,ns,0.010777677,0.003322673,3.24367678,0.00130871,pos,ns,2.883156711,-0.000169749,0.000114266,-1.485551301,0.138414052,neg,ns,0.118827363,Galnt2l,Galnt2l_Intron,8,121127485,121127534,121127485,121127486,50,-,CGTCAAGGGGTGGACGTGATATTTCAAACATCAGATCAGTGCGTTTATAT,"Intron (Galnt2l-201/Galnt2l, intron 1 of 15)",8,119910841,124345722,4434882,1,Galnt2l-201,1216644,Foxl1-201;Galnt2l-201,Foxl1;Galnt2l,-406;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,28,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
24883,cg02315172,0.0000342,0.0000202,1.688903659,0.092243418,gain,ns,0.000012,0.0000344,0.34815297,0.727961604,pos,ns,0.036011402,0.010073922,3.574715207,0.00040649,pos,ns,3.390950164,-0.00162596,0.000346441,-4.693318819,0.00000404,neg,ns,0.524255887,Slc20a1,Slc20a1_Exon,2,129208486,129208535,129208534,129208535,50,+,GCAGATCCTTACAGCCTGCTTTGGGTCATTCGCCCATGGTGGCAATGACG,"Exon (Slc20a1-201/Slc20a1, exon 8 of 11)",2,129198764,129211616,12853,1,Slc20a1-201,9722,Slc20a1-201;Slc20a1-205;Slc20a1-202;Slc20a1-203;Slc20a1-206,Slc20a1;Slc20a1;Slc20a1;Slc20a1;Slc20a1,0;9683;0;0;1126,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,20515,ENSMUSG00000027397,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11165,cg09604951,-0.00000311,0.00000297,-1.048143429,0.295389018,loss,ns,-0.00000175,0.00000504,-0.347981243,0.728090441,neg,ns,-0.000600943,0.001476551,-0.40699111,0.684295383,neg,ns,0.16475639,-0.0000113,0.0000508,-0.223395928,0.823374511,neg,ns,0.944499042,Ccdc186,Ccdc186_Exon,19,56808117,56808166,56808165,56808166,50,+,TCCTTCTCACCTCTTACATATTTCATTACCATTGCTTCTTTTTCTTGGCG,"Exon (Ccdc186-202/Ccdc186, exon 5 of 16)",19,56787481,56822190,34710,2,Ccdc186-202,14024,Ccdc186-202;Ccdc186-201;Ccdc186-204,Ccdc186;Ccdc186;Ccdc186,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,213993,ENSMUSG00000035173,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24191,cg25895219,-0.00000986,0.0000072,-1.370744158,0.171446358,loss,ns,0.00000425,0.0000122,0.347903869,0.728148493,pos,ns,0.004925141,0.003581455,1.375178993,0.170068949,pos,ns,0.769374972,-0.000291255,0.000123166,-2.364738299,0.018658616,neg,ns,0.757544888,Hpcal4,Hpcal4_Exon,4,123190727,123190776,123190727,123190728,50,+,CGTGTGGACAAGATCTTCAAGAAGATGGACCAGGATAAGGACGACCAGAT,"Exon (Hpcal4-201/Hpcal4, exon 5 of 5)",4,123183227,123194701,11475,1,Hpcal4-201,7500,Hpcal4-201;Hpcal4-202;Hpcal4-203;Hpcal4-205,Hpcal4;Hpcal4;Hpcal4;Hpcal4,0;0;7228;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,170638,ENSMUSG00000046093,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6373,cg05332877,0.0000196,0.00000445,4.403545246,0.0000147,gain,ns,-0.00000263,0.00000756,-0.347888818,0.728159786,neg,ns,-0.006661977,0.002215743,-3.006655947,0.002857408,neg,ns,2.5440278,0.000150641,0.0000762,1.976936879,0.048934597,pos,ns,0.877843348,Cpeb3,Cpeb3_Exon,19,37054274,37054323,37054274,37054275,50,-,CGTGGAACTCCCCCAACAAAGATAGTTTTTCTGGGGTCCAAAGGCTGAGA,"Exon (Cpeb3-201/Cpeb3, exon 9 of 11)",19,37021291,37207462,186172,2,Cpeb3-201,153139,Cpeb3-201;Cpeb3-203;Cpeb3-212;Cpeb3-210;Cpeb3-204;Cpeb3-208;Cpeb3-202;Cpeb3-205,Cpeb3;Cpeb3;Cpeb3;Cpeb3;Cpeb3;Cpeb3;Cpeb3;Cpeb3,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,9,208922,ENSMUSG00000039652,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16209,cg25366494,0.000011,0.00000294,3.738429845,0.000220473,gain,ns,-0.00000174,0.000005,-0.347783884,0.728238518,neg,ns,0.000220233,0.001464099,0.150422148,0.880529395,pos,ns,0.055256141,-0.0000128,0.0000504,-0.254095589,0.799590165,neg,ns,0.064264376,Vsx2,Vsx2_Intron,12,84590524,84590573,84590524,84590525,50,-,CGTGGTATTTCAGTGCCTGAGGCCCATCGATTCAAACTGAAATTAACTTA,"Intron (Vsx2-201/Vsx2, intron 3 of 4)",12,84569762,84595457,25696,1,Vsx2-201,20762,Vsx2-201;Vsx2-202,Vsx2;Vsx2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,20,12677,ENSMUSG00000021239,conserved gene and region,12,84590384,84590552,169,*,169,10,0.556213018,0.777726645,0.059171598,0.00000794,CpGisland,TRUE,U4,Pr-F
6401,cg08681110,-0.00000025,0.00000106,-0.236603227,0.813120879,loss,ns,-0.000000623,0.00000179,-0.347627018,0.728356221,neg,ns,-0.000613422,0.000525339,-1.167668963,0.243837623,neg,ns,0.612899284,-0.00000788,0.0000181,-0.436326139,0.662903837,neg,ns,0.024415705,Marcks,Marcks_fiveUTR,10,37138900,37138949,37138948,37138949,50,+,AAGATGCGGGGTCCAACGCCCAAGTGCACAGATGAATGGGCTCGCGGGCG,Promoter (<=1kb),10,37133375,37138920,5546,2,Marcks-201,0,Marcks-201,Marcks,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,8,17118,ENSMUSG00000069662,conserved gene but different region,10,37138906,37139051,146,*,146,22,0.726027397,1.143874644,0.150684932,1.99E-21,CpGisland,TRUE,NA,NRS
20729,cg03152480,-0.00000263,0.00000571,-0.461234735,0.644953649,loss,ns,0.00000337,0.00000969,0.347448661,0.728490057,pos,ns,0.002506433,0.002839602,0.882670692,0.378098162,pos,ns,0.422395433,-0.0000844,0.0000977,-0.86459862,0.387927658,neg,ns,0.781338661,Rnf219,Rnf219_Intron,14,104676733,104676782,104676733,104676734,50,-,CGAGGAGCAAGGTGCAGGTCCCTCAGCGATAACCTCCTGACTCCAGCATT,"Intron (D130009I18Rik-201/D130009I18Rik-201, intron 2 of 4)",14,104502386,104522645,20260,2,Rnf219-202,-154137,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,7,72486,ENSMUSG00000022120,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18286,cg15953471,-0.00000071,0.00000361,-0.196665348,0.844218297,loss,ns,-0.00000213,0.00000613,-0.347439941,0.728496601,neg,ns,0.001072793,0.001796093,0.59729253,0.550748105,pos,ns,0.259046989,-0.0000793,0.0000618,-1.284070547,0.200076123,neg,ns,0.892111523,Gm48316,Gm48316_Intergenic_upstream,13,94685379,94685428,94685379,94685380,50,+,CGCCGCTTCTCTGACTCCAATCATTCATCATGCTCAATGAGGCAGCAAAT,Distal Intergenic,13,94752270,94752593,324,1,Gm48316-201,-66842,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,36,42,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21270,cg03078535,0.0000017,0.000000399,4.253545491,0.0000279,gain,ns,0.000000236,0.000000679,0.347364744,0.72855303,pos,ns,0.000627865,0.000198786,3.158492758,0.001742144,pos,ns,2.758915947,-0.0000102,0.00000684,-1.489772415,0.137300775,neg,ns,0.009241539,Kcna3,Kcna3_Exon,3,107036711,107036760,107036711,107036712,50,+,CGCAACGAGTACTTCTTCGACCGCAACCGGCCCAGCTTCGACGCCATCCT,Promoter (<=1kb),3,107036169,107038070,1902,1,Kcna3-201,542,Kcna3-201,Kcna3,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,3,16491,ENSMUSG00000047959,conserved gene and region,3,107035790,107036982,1193,*,1193,133,0.706621961,0.899841207,0.111483655,1.79E-107,CpGisland,TRUE,U3,Pr-B
27889,cg03421009,0.0000441,0.0000085,5.188320199,0.000000384,gain,yes,0.00000501,0.0000144,0.347336374,0.728574319,pos,ns,0.028237579,0.004229874,6.675749797,1.14E-10,pos,yes,9.944857116,-0.000334756,0.000145465,-2.301283256,0.022038714,neg,ns,0.888295985,Prox1,Prox1_Intron,1,190148526,190148575,190148526,190148527,50,-,CGGGGAACCCGATTAAAAAGACAACTGAAGGACCCCCATTATCTGATCTT,"Intron (Prox1-202/Prox1, intron 3 of 4)",1,190118035,190170714,52680,2,Prox1-202,22139,Prox1-202;Prox1-201;Prox1-203,Prox1;Prox1;Prox1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,59,19130,ENSMUSG00000010175,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22309,cg03126469,-0.00000221,0.00000254,-0.870757199,0.384560534,loss,ns,-0.0000015,0.00000431,-0.347292926,0.728606924,neg,ns,-0.001282136,0.001263095,-1.015074997,0.310861661,neg,ns,0.507432837,0.0000202,0.0000434,0.465903349,0.64161186,pos,ns,0.948492622,Mta1,Mta1_Exon,12,113131326,113131375,113131374,113131375,50,+,TTACCAGTGGTATTCTTGGGGTCCCCCTAACATGCAGTGTCGTCTCTGCG,Promoter (<=1kb),12,113131332,113133380,2049,1,Mta1-207,0,Mta1-205;Mta1-201;Mta1-203;Mta1-204;Mta1-202;Mta1-206;Mta1-207;Mta1-208,Mta1;Mta1;Mta1;Mta1;Mta1;Mta1;Mta1;Mta1,0;0;0;0;0;0;0;-173,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,116870,ENSMUSG00000021144,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24570,cg27563760,-0.0000628,0.0000123,-5.108580802,0.000000568,loss,yes,0.00000726,0.0000209,0.347292518,0.728607231,pos,ns,-0.017295865,0.006120539,-2.82587304,0.005021281,neg,ns,2.299185511,0.000503837,0.000210485,2.393695291,0.017273866,pos,ns,0.682658439,Maz,Maz_Exon,7,127024892,127024941,127024892,127024893,50,+,CGTTCTGTTGAGTGCACTTGTCTGACGTGACTGTTGAGGTGATCCGGCCT,"Exon (Maz-203/Maz, exon 3 of 6)",7,127022130,127026526,4397,2,Maz-203,1585,Gm42742-201;Gm42742-203;Gm42742-204;Gm42742-202;Kif22-202;Kif22-201;Kif22-205;Kif22-206;Maz-203;Maz-201;Maz-204;Maz-202;Maz-206;Maz-205;Prrt2-201;Prrt2-202;Prrt2-204;Prrt2-205;Prrt2-206;Prrt2-207,Gm42742;Gm42742;Gm42742;Gm42742;Kif22;Kif22;Kif22;Kif22;Maz;Maz;Maz;Maz;Maz;Maz;Prrt2;Prrt2;Prrt2;Prrt2;Prrt2;Prrt2,0;0;0;0;4016;17530;3175;7763;0;0;0;0;0;0;0;0;-4990;-3936;-3755;-4537,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,16,17,17188,ENSMUSG00000030678,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
5940,cg02259423,-0.00000316,0.0000134,-0.23541785,0.814039874,loss,ns,0.00000791,0.0000228,0.347257976,0.728633153,pos,ns,-0.001724343,0.006677142,-0.258245672,0.796388678,neg,ns,0.098874923,0.000263753,0.000229626,1.148618812,0.251598706,pos,ns,0.623161548,Gm7733,Gm7733_Intergenic_downstream,3,35464407,35464456,35464455,35464456,50,+,TATGCCATGTCAGTCTGAGTGATTACAGAGCTGTGCAGTTTAATTTGACG,Distal Intergenic,3,35536882,35537800,919,2,Gm7733-201,73344,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,14,15,665655,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15730,cg07175149,0.0000199,0.00000319,6.24092401,1.43E-09,gain,yes,0.00000188,0.00000543,0.347197511,0.728678529,pos,ns,0.003484177,0.001589598,2.191860705,0.029133066,pos,ns,1.535613813,0.000045,0.0000547,0.823699034,0.410743832,pos,ns,0.045088952,Chst11,Chst11_Exon,10,82985943,82985992,82985991,82985992,50,+,ATCCTGGTCATCTTCTATTTCCAAAGTATGTTGCACCCAGGTAGGGGGCG,Promoter (<=1kb),10,82985498,83195900,210403,1,Chst11-201,445,Chst11-201,Chst11,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,6,58250,ENSMUSG00000034612,conserved gene but different region,10,82985991,82986137,147,*,147,11,0.56462585,0.93902439,0.074829932,0.000000227,CpGisland,TRUE,NA,NRS
11927,cg19963169,0.00000735,0.00000587,1.252579466,0.211302876,gain,ns,-0.00000346,0.00000997,-0.347168267,0.728700477,neg,ns,-0.000610016,0.002922168,-0.208754537,0.834776963,neg,ns,0.078429544,0.0000514,0.000100493,0.511939651,0.609057744,pos,ns,0.912009374,Gm13626,Gm13626_Intergenic_downstream,2,61686077,61686126,61686077,61686078,50,-,CGCTCTGTGTGCACTGAATAGGATCACGATCCGGAGAGCTGAAAATGTAA,Distal Intergenic,2,61706893,61707591,699,2,Gm13626-201,21514,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,8,,NA,mapped to different genes,2,61686048,61686109,62,*,62,9,0.629032258,1.468421053,0.14516129,1.18E-08,CpGisland,TRUE,U15,NS
13689,cg18397932,0.0000498,0.000013,3.81774421,0.000162629,gain,ns,-0.00000769,0.0000222,-0.347156997,0.728708935,neg,ns,0.016931472,0.006492509,2.607847282,0.009552389,pos,ns,2.019887991,-0.000633867,0.000223277,-2.838928822,0.004825413,neg,ns,0.297088011,Tle1,Tle1_Exon,4,72122469,72122518,72122469,72122470,50,+,CGTCTGTGTGGCCCTGGAATTGCCTGATAAAACAAACCAGATTGAATAAT,"Exon (Tle1-203/Tle1, exon 17 of 20)",4,72117142,72200919,83778,2,Tle1-203,78401,Tle1-203;Tle1-202;Tle1-204;Tle1-207;Tle1-201;Tle1-206,Tle1;Tle1;Tle1;Tle1;Tle1;Tle1,0;0;0;0;0;-1735,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,20,21885,ENSMUSG00000008305,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
18197,cg07991995,-0.0000216,0.0000161,-1.339257209,0.18146805,loss,ns,0.00000952,0.0000274,0.347041441,0.728795659,pos,ns,-0.004780129,0.008032876,-0.595070709,0.552230326,neg,ns,0.257879748,0.000481282,0.00027625,1.742196364,0.082465846,pos,ns,0.844521502,Cacna1g,Cacna1g_Exon,11,94443313,94443362,94443313,94443314,50,-,CGCAGCACCGACAGGCCGCCCCCCTGCTGGCCCACGATCTCCCACACGCT,"Exon (Cacna1g-202/Cacna1g, exon 11 of 36)",11,94408391,94474100,65710,2,Cacna1g-202,30738,Cacna1g-202;Cacna1g-203;Cacna1g-205;Cacna1g-206;Cacna1g-207;Cacna1g-208;Cacna1g-209;Cacna1g-210;Cacna1g-211;Cacna1g-201;Cacna1g-204;Cacna1g-216,Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,18,12291,ENSMUSG00000020866,conserved gene and region,11,94443221,94443395,175,*,175,12,0.662857143,0.633484163,0.068571429,0.000000139,CpGisland,TRUE,U11,Tr-P
11533,cg16146971,-0.00000346,0.00000438,-0.789361659,0.430503971,loss,ns,-0.00000258,0.00000744,-0.346672031,0.729072924,neg,ns,-0.00800419,0.002179252,-3.67290693,0.000282386,neg,ns,3.549157408,0.000179861,0.0000749,2.399928052,0.016987938,pos,ns,0.923833126,Shtn1,Shtn1_Intron,19,59043809,59043858,59043809,59043810,50,-,CGTTAAGCGTAATTACTGGTAGACATTGTAAATAAACAGGATTGGAAGTG,"Intron (Shtn1-202/Shtn1, intron 3 of 14)",19,58973356,59076069,102714,2,Shtn1-202,32211,Shtn1-202;Shtn1-201,Shtn1;Shtn1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,10,71653,ENSMUSG00000041362,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22727,cg02023768,-0.0000164,0.0000127,-1.292706789,0.19707513,loss,ns,0.00000749,0.0000216,0.346617548,0.729113819,pos,ns,-0.010360776,0.006328618,-1.637130856,0.102617817,neg,ns,0.988777227,0.000277792,0.000217641,1.276377103,0.202777625,pos,ns,0.83651488,Meis2,Meis2_threeUTR,2,115863165,115863214,115863213,115863214,50,-,AATTTGACAAAGCTTAAAGGTAACAGCATTTTCTTCTAGTGAGGAACACG,3' UTR,2,115863064,116065047,201984,2,Meis2-201,201833,Meis2-201;Meis2-203;Meis2-205;Meis2-206;Meis2-204;Meis2-202;Meis2-208;Meis2-219;Meis2-216;Meis2-218;Meis2-214;Meis2-207;Meis2-215,Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,97,17536,ENSMUSG00000027210,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18619,cg10465307,0.0000316,0.000012,2.635130852,0.008833228,gain,ns,-0.00000705,0.0000204,-0.346559611,0.729157309,neg,ns,0.027622415,0.005962298,4.63284681,0.00000532,pos,ns,5.274341677,-0.000459235,0.000205043,-2.239703431,0.025818848,neg,ns,0.578461445,Hoxb3,Hoxb3_Intron,11,96334628,96334677,96334628,96334629,50,-,CGGCTGGGCCCTAAGTGGCCGTAATTTAATTGATTTTATCATAAATCATC,"Intron (Hoxb3-202/Hoxb3, intron 1 of 3)",11,96323326,96347930,24605,1,Hoxb3-202,11302,Hoxb3-202;Hoxb3-203,Hoxb3;Hoxb3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,19,15410,ENSMUSG00000048763,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
8740,cg12959926,-0.00000299,0.00000188,-1.58749205,0.113420654,loss,ns,-0.00000111,0.0000032,-0.346056384,0.729535083,neg,ns,0.000500307,0.000937517,0.533651507,0.593965087,pos,ns,0.226239082,-0.0000554,0.0000322,-1.717146744,0.086951124,neg,ns,0.966199284,Tmem63b,Tmem63b_Exon,17,45662861,45662910,45662909,45662910,50,-,ACCGAAGGGCACGATGATGGGGCAGGTGATACTGTAGGTCATGACCACCG,"Exon (Tmem63b-201/Tmem63b, exon 20 of 24)",17,45660171,45686259,26089,2,Tmem63b-201,23349,Capn11-201;Capn11-202;Tmem63b-201;Tmem63b-208;Tmem63b-203;Tmem63b-207,Capn11;Capn11;Tmem63b;Tmem63b;Tmem63b;Tmem63b,-3536;-3564;0;0;3544;23063,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,12,224807,ENSMUSG00000036026,conserved gene and region,17,45662805,45662957,153,*,153,13,0.647058824,0.81583265,0.08496732,2.55E-09,CpGisland,TRUE,NA,NRS
19450,cg08712844,-0.000018,0.0000106,-1.688633309,0.092295306,loss,ns,0.00000625,0.0000181,0.346032444,0.729553057,pos,ns,-0.00920784,0.005291368,-1.740162666,0.082822818,neg,ns,1.081849995,0.000161633,0.00018197,0.88823881,0.37510097,pos,ns,0.70645611,Pja1,Pja1_Intergenic_downstream,X,99337358,99337407,99337406,99337407,50,-,TGCTGCCTGTCCTGAGAAATTTATGTCACACCCACTCCATCATCCTGGCG,Distal Intergenic,20,99466146,99470672,4527,2,Pja1-204,133314,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,17,18744,ENSMUSG00000034403,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1596,cg21598466,-0.00000855,0.00000266,-3.219991361,0.001417926,loss,ns,0.00000156,0.00000451,0.345928622,0.729631005,pos,ns,0.000409922,0.001321702,0.310146878,0.756657664,pos,ns,0.121100565,-0.00000764,0.0000455,-0.168009058,0.866685708,neg,ns,0.95837069,Zfp521,Zfp521_Intron,18,13810356,13810405,13810356,13810357,50,+,CGGGCCACAGGCGCCATCCTGAGAGCTGTGAGATACCTTGCAATCTTGGC,"Intron (Zfp521-201/Zfp521, intron 5 of 7)",18,13687013,13972787,285775,2,Zfp521-201,162382,Zfp521-201;Zfp521-205;Zfp521-204,Zfp521;Zfp521;Zfp521,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,81,225207,ENSMUSG00000024420,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25121,cg02496392,-0.000134791,0.000011,-12.24296171,2.22E-28,loss,yes,0.00000647,0.0000187,0.345831408,0.729703994,pos,ns,0.013749233,0.005479628,2.509154514,0.012611913,pos,ns,1.899219024,-0.000475366,0.000188444,-2.522583665,0.012149899,neg,ns,0.792460488,Ahdc1,Ahdc1_Intron,4,133025833,133025882,133025833,133025834,50,+,CGAATGATCCCATTATGGGAGCGTGATTTTATTCCACGTGTCACAGAGTC,"Intron (Ahdc1-210/Ahdc1, intron 2 of 3)",4,133011260,133060820,49561,1,Ahdc1-210,14573,Ahdc1-210;Ahdc1-203;Ahdc1-204;Ahdc1-205;Ahdc1-207;Ahdc1-211;Ahdc1-209;Ahdc1-206;Ahdc1-201,Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,35,49,230793,ENSMUSG00000037692,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19821,cg17365200,0.0000103,0.00000384,2.674404839,0.007883268,gain,ns,0.00000226,0.00000653,0.345704401,0.729799357,pos,ns,-0.002034393,0.00191227,-1.063863039,0.288218728,neg,ns,0.540277803,0.0000572,0.0000658,0.869887722,0.385034817,pos,ns,0.860523885,Wnk4,Wnk4_threeUTR,11,101276836,101276885,101276836,101276837,50,-,CGAAGGAACTCTCTGAGTGGCAGCAGCACCGGCTCCCAGGAGCAGCGGGC,3' UTR,11,101260567,101277409,16843,1,Wnk4-202,16269,Cntd1-202;Cntd1-201;Coa3-201;Coa3-202;Wnk4-202;Wnk4-201;Wnk4-203;Wnk4-204;Wnk4-205,Cntd1;Cntd1;Coa3;Coa3;Wnk4;Wnk4;Wnk4;Wnk4;Wnk4,-2127;-2211;2229;2058;0;0;0;11528;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,3,69847,ENSMUSG00000035112,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1915,cg16905958,-0.00000984,0.00000547,-1.799279039,0.072946956,loss,ns,-0.00000321,0.0000093,-0.345694648,0.72980668,neg,ns,-0.00203582,0.002723263,-0.747566553,0.455288329,neg,ns,0.341713482,-0.0000295,0.0000937,-0.314774391,0.753144717,neg,ns,0.896105216,Vstm2a,Vstm2a_threeUTR,11,16281844,16281893,16281844,16281845,50,-,CGAGGATAGCTACAAGCCATGGACTTTCTGTCCTGCTTCTTGTTTGTGGC,3' UTR,11,16257724,16284186,26463,1,Vstm2a-201,24120,Vstm2a-201;Vstm2a-202;Vstm2a-205;Vstm2a-204;Vstm2a-203,Vstm2a;Vstm2a;Vstm2a;Vstm2a;Vstm2a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,7,211739,ENSMUSG00000048834,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10934,cg22159903,0.000087,0.0000231,3.76094538,0.000202333,gain,ns,-0.0000136,0.0000393,-0.345689043,0.729810889,neg,ns,0.094550793,0.011519564,8.207844985,6.11E-15,pos,yes,14.21377497,-0.001907997,0.000396157,-4.816265565,0.00000229,neg,ns,0.766047434,Tcf7l2,Tcf7l2_Intron,19,55890262,55890311,55890310,55890311,50,+,TAGAAATTGCCGTCCTGTTGATCAATCCTCTCGACATGACAGATTTGCCG,"Intron (Tcf7l2-213/Tcf7l2, intron 4 of 13)",19,55741820,55933229,191410,1,Tcf7l2-213,148442,Tcf7l2-213;Tcf7l2-201;Tcf7l2-208;Tcf7l2-211;Tcf7l2-212;Tcf7l2-206;Tcf7l2-204;Tcf7l2-205;Tcf7l2-222;Tcf7l2-215;Tcf7l2-214;Tcf7l2-207;Tcf7l2-202;Tcf7l2-209;Tcf7l2-210;Tcf7l2-217;Tcf7l2-220;Tcf7l2-218,Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,55,88,21416,ENSMUSG00000024985,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15772,cg16767192,-0.0000085,0.00000444,-1.917351517,0.056112127,loss,ns,-0.0000026,0.00000753,-0.345432762,0.730003329,neg,ns,-0.000245921,0.002207468,-0.111404309,0.911367838,neg,ns,0.040306301,0.0000546,0.0000759,0.719166707,0.472579975,pos,ns,0.902354167,Slc4a5,Slc4a5_Exon,6,83289227,83289276,83289227,83289228,50,-,CGTGGCTGCCACGGTCATCTCCATCGCCCACATCGACAGCCTCAAGATGG,"Exon (Slc4a5-203/Slc4a5, exon 20 of 27)",6,83219828,83303476,83649,1,Slc4a5-203,69399,Slc4a5-203;Slc4a5-201;Slc4a5-202;Slc4a5-206;Slc4a5-205,Slc4a5;Slc4a5;Slc4a5;Slc4a5;Slc4a5,0;0;0;11834;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,232156,ENSMUSG00000068323,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11730,cg03673113,-0.00000205,0.00000316,-0.64850008,0.517141637,loss,ns,-0.00000186,0.00000537,-0.345291803,0.730109183,neg,ns,0.0000849,0.001574298,0.053914818,0.957037759,pos,ns,0.019070927,-0.0000748,0.0000541,-1.38184568,0.168014056,neg,ns,0.913382476,Tom1l2,Tom1l2_Exon,11,60258890,60258939,60258938,60258939,50,+,CCAGGGACCATTTCTGTTAACATCTCAGACATGACTTTTGTGTTTCCTCG,"Exon (Tom1l2-204/Tom1l2, exon 7 of 14)",11,60226714,60352905,126192,2,Tom1l2-204,93966,Tom1l2-204;Tom1l2-202;Tom1l2-203;Tom1l2-206;Tom1l2-201;Tom1l2-205;Tom1l2-208,Tom1l2;Tom1l2;Tom1l2;Tom1l2;Tom1l2;Tom1l2;Tom1l2,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,216810,ENSMUSG00000000538,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13414,cg11211699,-0.0000115,0.00000358,-3.228765495,0.001376519,loss,ns,0.0000021,0.00000608,0.345267676,0.730127301,pos,ns,0.001249036,0.001779949,0.701725574,0.483376802,pos,ns,0.315714196,-0.0000962,0.0000612,-1.572384166,0.116881521,neg,ns,0.950211296,Nr2f2,Nr2f2_Intron,7,70424012,70424061,70424012,70424013,50,+,CGGTTTACACTTCCAGGGTACACAAAAAGAGGCCATTTCATCAAGCTAAT,"Intron (B130024G19Rik-205/B130024G19Rik-205, intron 2 of 3)",7,70354439,70366735,12297,2,Nr2f2-202,-57277,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,69,11819,ENSMUSG00000030551,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14004,cg02206762,-0.000000774,0.00000354,-0.218797692,0.826951621,loss,ns,-0.00000207,0.00000601,-0.345042045,0.730296751,neg,ns,-0.000665334,0.001759887,-0.378055126,0.70564838,neg,ns,0.151411651,0.00006,0.0000605,0.991732943,0.322101267,pos,ns,0.917944967,Gm13668,Gm13668_Intergenic_upstream,2,74168983,74169032,74169031,74169032,50,+,ATCTGGTCATTTATTCACTAATAAGCCCCTAATGGCCCAAATATTCACCG,Distal Intergenic,2,73959669,73960669,1001,2,Gm13668-201,-208314,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,18,20,667729,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7422,cg25066947,0.000000597,0.000000301,1.984205326,0.048114523,gain,ns,0.000000176,0.000000511,0.345041972,0.730296807,pos,ns,0.000416431,0.000149779,2.780297469,0.00576295,pos,ns,2.239355161,-0.00000989,0.00000515,-1.920105658,0.055761947,neg,ns,0.007621129,Ostm1,Ostm1_Intron,10,42591939,42591988,42591939,42591940,50,+,CGCGGGGCGCCCCATTGACTGGGCCCCGAGCCCCACTTTTCACAAACTCC,"Intron (Ostm1-202/Ostm1, intron 2 of 5)",10,42583835,42698323,114489,1,Ostm1-202,8104,Ostm1-202;Ostm1-203,Ostm1;Ostm1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,21,22,14628,ENSMUSG00000038280,mapped to different genes,10,42591770,42591966,197,*,197,30,0.730964467,1.140926641,0.152284264,2.64E-29,CpGisland,TRUE,U3,Pr-B
15760,cg23348638,0.00000603,0.00000762,0.791587209,0.429206667,gain,ns,-0.00000447,0.000013,-0.345036137,0.730301188,neg,ns,-0.006177814,0.003794045,-1.628292227,0.10447876,neg,ns,0.980971992,0.0000152,0.000130477,0.116355489,0.907446151,pos,ns,0.814727032,Chst11,Chst11_Exon,10,83191055,83191104,83191055,83191056,50,+,CGACCTGAAGCACTTGGTGGTGGATGAGGACCACGAGCTCATCTACTGCT,"Exon (Chst11-201/Chst11, exon 3 of 3)",10,82985498,83195900,210403,1,Chst11-201,205557,Chst11-201,Chst11,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,6,58250,ENSMUSG00000034612,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17534,cg13809900,-0.0000093,0.0000109,-0.854594983,0.39343535,loss,ns,-0.00000638,0.0000185,-0.345003708,0.730325544,neg,ns,-0.007333193,0.005417664,-1.353570953,0.176859383,neg,ns,0.752371894,-0.0000685,0.000186313,-0.367502376,0.713495089,neg,ns,0.584534886,Gm12632,Gm12632_Intergenic_upstream,4,90764714,90764763,90764714,90764715,50,-,CGAGACTTGACAACATTCTTGTCAAGAGAATTGATAGGAAAGGCCAGGGC,Distal Intergenic,4,90856883,90857377,495,1,Gm12632-201,-92169,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,606536,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5819,cg20202572,0.000004,0.00000398,1.006972163,0.314733488,gain,ns,0.00000233,0.00000675,0.345000656,0.730327836,pos,ns,-0.003111287,0.001978984,-1.572164067,0.11693255,neg,ns,0.93206458,-0.0000652,0.0000681,-0.957735862,0.338942287,neg,ns,0.873514384,Phf19,Phf19_Exon,2,34895819,34895868,34895819,34895820,50,+,CGCCCAGCTGCACCAAAGTAGTTGGTGATAGATGACTTGAGGTGGGACAG,"Exon (Phf19-201/Phf19, exon 15 of 15)",2,34893757,34913976,20220,2,Phf19-201,18108,Cutal-203;Cutal-202;Cutal-205;Cutal-201;Phf19-201;Phf19-203;Phf19-202;Phf19-204,Cutal;Cutal;Cutal;Cutal;Phf19;Phf19;Phf19;Phf19,21423;21343;21343;21301;0;0;9039;18158,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,74016,ENSMUSG00000026873,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17266,cg06202504,-0.00000101,0.00000335,-0.300517787,0.763983669,loss,ns,0.00000197,0.0000057,0.344996669,0.730330831,pos,ns,0.001713624,0.00166877,1.026878336,0.305278338,pos,ns,0.515304012,-0.0000946,0.0000574,-1.648812566,0.100199032,neg,ns,0.917467446,Nrxn3,Nrxn3_Intron,12,89352682,89352731,89352730,89352731,50,-,TTTGCTCCCACTTTTCTGTTGCGGTTGACGACACATGACAAACCTAACCG,"Intron (Nrxn3-213/Nrxn3, intron 6 of 18)",12,88722986,90332878,1609893,1,Nrxn3-213,629696,Nrxn3-213;Nrxn3-208;Nrxn3-205;Nrxn3-201;Nrxn3-210,Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,39,18191,ENSMUSG00000066392,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26734,cg15974875,-0.00000142,0.00000206,-0.689800299,0.490835828,loss,ns,0.00000121,0.0000035,0.344854156,0.730437867,pos,ns,0.000416115,0.001024056,0.406340021,0.684773147,pos,ns,0.164453279,-0.0000166,0.0000352,-0.470167458,0.638565974,neg,ns,0.941156068,Huwe1,Huwe1_Exon,X,151907387,151907436,151907387,151907388,50,+,CGCTTTGACCGGGAGGATGATCTCATCATTGAGTTTGACAACATGTTCTC,"Exon (Huwe1-201/Huwe1, exon 54 of 83)",20,151803327,151935417,132091,1,Huwe1-201,104060,Huwe1-201;Huwe1-202;Huwe1-219;Huwe1-208;Huwe1-215,Huwe1;Huwe1;Huwe1;Huwe1;Huwe1,0;0;0;-1409;-1409,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,22,28,59026,ENSMUSG00000025261,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17953,cg13112656,-0.0000138,0.00000569,-2.421222084,0.016042313,loss,ns,0.00000334,0.00000967,0.344788723,0.730487013,pos,ns,0.000370057,0.002834291,0.130564115,0.896204816,pos,ns,0.047592727,0.0000942,0.0000975,0.966580252,0.334507365,pos,ns,0.882369669,Thbs4,Thbs4_Intron,13,92765835,92765884,92765883,92765884,50,-,CAATTATTTTAGTAGTCACGCCAAGTTTATTAATCCTTTACCATCTGTCG,"Intron (Thbs4-201/Thbs4, intron 10 of 21)",13,92751590,92794818,43229,2,Thbs4-201,28934,Thbs4-201,Thbs4,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,21828,ENSMUSG00000021702,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1435,cg20864383,-0.0000162,0.00000535,-3.025387749,0.002691025,loss,ns,-0.00000313,0.00000909,-0.344775429,0.730496998,neg,ns,-0.003716803,0.002662585,-1.395937543,0.16373221,neg,ns,0.785865876,-0.0000517,0.0000916,-0.565005616,0.572478584,neg,ns,0.885613577,Triqk,Triqk_Intergenic_upstream,4,12880325,12880374,12880325,12880326,50,+,CGGCTATGTTCCCTACATAATTCAAATTCAGTGGCAGGCTTCCACCTCCG,Distal Intergenic,4,12906838,12980873,74036,1,Triqk-201,-26464,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,11,208820,ENSMUSG00000055963,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23626,cg14617937,-0.0000892,0.0000152,-5.861134056,1.18E-08,loss,yes,-0.00000891,0.0000258,-0.344694891,0.730557491,neg,ns,-0.015721414,0.007571616,-2.076361763,0.038684206,neg,ns,1.412466309,0.000149108,0.000260387,0.572637551,0.567305207,pos,ns,0.82468019,Dll4,Dll4_Intergenic_downstream,2,119336615,119336664,119336615,119336616,50,-,CGTTCCCACAGCCTGAGCCGGCAGCAGGGGGAAGAACAACACGACCTCAC,Downstream (<1kb),2,119328538,119332153,3616,1,Dll4-202,8126,Dll4-201;Dll4-202,Dll4;Dll4,0;8077,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,1,20,54485,ENSMUSG00000027314,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23689,cg02495519,-0.00000125,0.00000169,-0.740162245,0.459761739,loss,ns,0.000000992,0.00000288,0.344646053,0.730594175,pos,ns,0.000717664,0.000843594,0.85072236,0.395580212,pos,ns,0.402765441,0.00000335,0.000029,0.115574846,0.908064328,pos,ns,0.08642136,Dcun1d3,Dcun1d3_fiveUTR,7,119895554,119895603,119895602,119895603,50,+,TCACAGCTGCTCCAGAGGTTCCTCCAGTCAAACCCTTTCTGGAAACGACG,Promoter (<=1kb),7,119852796,119895745,42950,2,Dcun1d3-201,142,Dcun1d3-201;Dcun1d3-206;Dcun1d3-202;Dcun1d3-203;Dcun1d3-207;Lyrm1-204;Lyrm1-205;Lyrm1-209;Lyrm1-207;Lyrm1-201;Lyrm1-203;Lyrm1-202;Lyrm1-208,Dcun1d3;Dcun1d3;Dcun1d3;Dcun1d3;Dcun1d3;Lyrm1;Lyrm1;Lyrm1;Lyrm1;Lyrm1;Lyrm1;Lyrm1;Lyrm1,0;0;0;0;0;-258;-258;-264;-267;-279;-689;-4505;-4528,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,3,233805,ENSMUSG00000048787,mapped to different genes,7,119895599,119895914,316,*,316,39,0.712025317,0.984030661,0.123417722,7.65E-34,CpGisland,TRUE,U1,Pr-A
23942,cg00526068,-0.00000651,0.00000206,-3.155472175,0.00175971,loss,ns,-0.00000121,0.0000035,-0.344633049,0.730603943,neg,ns,0.000753352,0.001026168,0.734140812,0.463417824,pos,ns,0.334027267,-0.00000975,0.0000353,-0.27629126,0.782508476,neg,ns,0.962663068,Gm9240,Gm9240_Intergenic_upstream,7,121247724,121247773,121247772,121247773,50,-,AAATTTACAGCCACAAGTCAGTTGTGATAAATAATCCCAGAAGTGTTCCG,Distal Intergenic,7,121223253,121223994,742,2,Gm9240-201,-23779,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,4,668556,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16484,cg10629958,-0.0000347,0.0000122,-2.838391727,0.004833332,loss,ns,0.00000715,0.0000207,0.344505924,0.730699433,pos,ns,-0.009460252,0.006079034,-1.556209877,0.120678481,neg,ns,0.918370165,0.000304641,0.000209057,1.457209497,0.146070756,pos,ns,0.704388708,Dmd,Dmd_Exon,X,85150200,85150249,85150200,85150201,50,-,CGTTTTTTATCAGGCTAGCAGAAATGGAAAACAGCAATGGATCTTATCTA,"Exon (Dmd-203/Dmd, exon 73 of 79)",20,82948903,85206141,2257239,1,Dmd-203,2201297,Dmd-203;Dmd-215;Dmd-214;Dmd-202;Dmd-201,Dmd;Dmd;Dmd;Dmd;Dmd,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,20,28,13405,ENSMUSG00000045103,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11534,cg11855699,0.00000344,0.00000804,0.42801681,0.668936084,gain,ns,-0.0000047,0.0000137,-0.344451746,0.730740131,neg,ns,-0.00445927,0.004000058,-1.114801491,0.265799002,neg,ns,0.575446654,-0.000178486,0.000137562,-1.297495342,0.195425501,neg,ns,0.828029092,Shtn1,Shtn1_Intron,19,59043992,59044041,59043992,59043993,50,-,CGGCATAATGGTATCAGCACTGCTGACAGAGCAGTGAATTAAATTGTATC,"Intron (Shtn1-202/Shtn1, intron 3 of 14)",19,58973356,59076069,102714,2,Shtn1-202,32028,Shtn1-202;Shtn1-201,Shtn1;Shtn1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,10,71653,ENSMUSG00000041362,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3588,cg06113421,-0.0000101,0.00000376,-2.694816973,0.007426771,loss,ns,0.0000022,0.00000639,0.344438638,0.730749977,pos,ns,-0.000877651,0.001872974,-0.468587087,0.639694135,neg,ns,0.194027631,-0.0000225,0.0000644,-0.349590178,0.72688365,neg,ns,0.934661455,Cacna1b,Cacna1b_Exon,2,24625281,24625330,24625329,24625330,50,+,GGCGGGGACATGTGTTTCAGCATCTCAAACATGTCATTGTAACTGATGCG,"Exon (Cacna1b-202/Cacna1b, exon 38 of 46)",2,24603887,24763152,159266,2,Cacna1b-202,137822,Cacna1b-202;Cacna1b-204;Cacna1b-203;Cacna1b-201;Cacna1b-205;Cacna1b-207;Cacna1b-210,Cacna1b;Cacna1b;Cacna1b;Cacna1b;Cacna1b;Cacna1b;Cacna1b,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,12287,ENSMUSG00000004113,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14596,cg08770738,-0.0000149,0.00000374,-3.9893972,0.0000827,loss,ns,-0.00000219,0.00000636,-0.344394279,0.7307833,neg,ns,-0.002733853,0.00186232,-1.467982552,0.143122843,neg,ns,0.844291045,0.0000194,0.000064,0.302565181,0.762424167,pos,ns,0.960946256,Pcbp3,Pcbp3_Exon,10,76785124,76785173,76785172,76785173,50,-,GCGGATCGGCTCTTACCTGACCACCTGCAAAAATGACAGGGGTGGAGGCG,"Exon (Pcbp3-201/Pcbp3, exon 10 of 16)",10,76761857,76961788,199932,2,Pcbp3-201,176615,Pcbp3-201;Pcbp3-207;Pcbp3-206;Pcbp3-203;Pcbp3-205;Pcbp3-209;Pcbp3-202;Pcbp3-208,Pcbp3;Pcbp3;Pcbp3;Pcbp3;Pcbp3;Pcbp3;Pcbp3;Pcbp3,0;0;0;0;0;0;0;120689,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,59093,ENSMUSG00000001120,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9222,cg26472243,0.00000272,0.0000033,0.82476284,0.410140415,gain,ns,-0.00000193,0.0000056,-0.343996449,0.73108217,neg,ns,0.000949508,0.001640079,0.578940154,0.563049965,pos,ns,0.249453064,-0.0000374,0.0000564,-0.663451173,0.507534705,neg,ns,0.929600705,Gm20517,Gm20517_threeUTR,17,47679683,47679732,47679683,47679684,50,-,CGAGAGAAGATTGGGGTCCATGTCGTCTTTGACCAGGTATTAACCATGGA,3' UTR,17,47611613,47683861,72249,1,Gm20517-202,68070,Gm20517-202;Usp49-201;Usp49-204;Usp49-202,Gm20517;Usp49;Usp49;Usp49,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,6,112694759,ENSMUSG00000023984,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5509,cg08688229,0.00000524,0.00000163,3.222931851,0.001403922,gain,ns,0.00000095,0.00000276,0.34390303,0.731152358,pos,ns,0.000304367,0.00080937,0.376054641,0.707133497,pos,ns,0.15049859,0.00000113,0.0000278,0.040480998,0.967735715,pos,ns,0.965394226,Kalrn,Kalrn_threeUTR,16,34153439,34153488,34153439,34153440,50,+,CGCGCTAAACGTAAGTGGAGAAAGGATCTCCAGGTCCCAGGTGCCACCGA,3' UTR,16,33975495,34456917,481423,2,Kalrn-201,303429,Kalrn-201;Kalrn-209;Kalrn-217;Kalrn-208;Kalrn-207;Kalrn-206;Kalrn-202;Kalrn-205;Kalrn-204;Kalrn-218,Kalrn;Kalrn;Kalrn;Kalrn;Kalrn;Kalrn;Kalrn;Kalrn;Kalrn;Kalrn,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,22,545156,ENSMUSG00000061751,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25522,cg23643330,0.0000107,0.000003,3.586144976,0.000389773,gain,ns,0.00000175,0.00000509,0.343890755,0.73116158,pos,ns,0.002181816,0.001490868,1.463453264,0.144356589,pos,ns,0.840563387,-0.0000778,0.0000513,-1.517201163,0.130234982,neg,ns,0.051037084,Jag1,Jag1_fiveUTR,2,137116451,137116500,137116499,137116500,50,-,AGGCAAAGAGCCCGGCCTCCTTTTATTATTCTGATCGCTTCTTTGAGACG,Promoter (<=1kb),2,137081456,137116644,35189,2,Jag1-201,144,Jag1-201,Jag1,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,16,16449,ENSMUSG00000027276,conserved gene and region,2,137116438,137116613,176,*,176,12,0.505681818,1.193220339,0.068181818,0.000000148,CpGisland,TRUE,NA,NRS
5049,cg08148707,-0.0000695,0.00000976,-7.115886528,7.75E-12,loss,yes,-0.0000057,0.0000166,-0.343827359,0.731209213,neg,ns,-0.015578755,0.004858849,-3.206264637,0.001485027,neg,ns,2.828265771,0.000312327,0.000167095,1.869152514,0.06254435,pos,ns,0.746172083,Nup214,Nup214_Exon,2,32047469,32047518,32047517,32047518,50,-,GGGTGCCAGCATTCGGTTCAGCCCCAGCCTTTACAAGCCCTCTGGGCTCG,"Exon (Nup214-201/Nup214, exon 33 of 36)",2,31974436,32052371,77936,1,Nup214-201,73033,Fam78a-203;Nup214-201;Nup214-208;Nup214-210;Nup214-209;Nup214-203,Fam78a;Nup214;Nup214;Nup214;Nup214;Nup214,0;0;0;0;-3477;-4174,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,227720,ENSMUSG00000001855,conserved gene and region,2,32047482,32047573,92,*,92,8,0.652173913,0.826038159,0.086956522,0.00000628,CpGisland,TRUE,U10,Tr-S
6677,cg14022830,0.00000544,0.00000455,1.19760173,0.231987006,gain,ns,-0.00000266,0.00000772,-0.343772974,0.731250075,neg,ns,-0.000979109,0.00226279,-0.432699746,0.665533784,neg,ns,0.176829894,-0.000126709,0.0000778,-1.628288247,0.104479604,neg,ns,0.817644466,Arap3,Arap3_Exon,18,37990721,37990770,37990769,37990770,50,-,GCCAGCTCTCCAGGGCTCAAGGCAGCAAACACCTTGGCCTTGTGTCCACG,"Exon (Arap3-208/Arap3, exon 8 of 33)",18,37972628,37998908,26281,2,Arap3-208,8138,Arap3-208;Arap3-201;Arap3-207;Arap3-209,Arap3;Arap3;Arap3;Arap3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,10,106952,ENSMUSG00000024451,conserved gene and region,18,37990769,37990881,113,*,113,9,0.681415929,0.741253644,0.079646018,0.00000256,CpGisland,TRUE,U11,Tr-P
20125,cg23931487,0.0000869,0.0000165,5.262629989,0.000000266,gain,yes,0.00000965,0.0000281,0.343757912,0.731261392,pos,ns,0.005404492,0.008222139,0.65730975,0.511469493,pos,ns,0.291180265,0.000184433,0.000282759,0.65226147,0.514715852,pos,ns,0.292247802,Atp5g2,Atp5g2_Promoter,15,102672452,102672501,102672452,102672453,50,+,CGGCAGAGGGATTTATATGGGCCCGTTATTTCACACCGATCCTCCATCTG,Promoter (<=1kb),15,102665801,102672352,6552,2,Atp5g2-203,-100,Atp5g2-202;Atp5g2-201;Atp5g2-204;Atp5g2-203,Atp5g2;Atp5g2;Atp5g2;Atp5g2,-1325;-4703;-4709;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,10,18,67942,ENSMUSG00000062683,mapped to different genes,15,102672078,102672489,412,*,412,37,0.621359223,0.940117176,0.089805825,1.33E-26,CpGisland,TRUE,U1,Pr-A
25469,cg22033643,-0.0000216,0.00000556,-3.880335716,0.000127447,loss,ns,0.00000324,0.00000944,0.343652263,0.731340775,pos,ns,-0.000442324,0.002765553,-0.159940545,0.873032072,neg,ns,0.058969802,-0.000161858,0.0000951,-1.701853966,0.089785322,neg,ns,0.923479279,Snap25,Snap25_Exon,2,136773920,136773969,136773968,136773969,50,+,AAAGCCTGGGGCAATAATCAGGACGGAGTGGTGGCCAGCCAGCCTGCTCG,"Exon (Snap25-201/Snap25, exon 6 of 8)",2,136713453,136782428,68976,1,Snap25-201,60467,Snap25-201;Snap25-202,Snap25;Snap25,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,9,20614,ENSMUSG00000027273,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13627,cg23177112,0.0000998,0.00000942,10.59451687,1.38E-22,gain,yes,-0.0000055,0.000016,-0.343645231,0.731346059,neg,ns,0.010772932,0.004686956,2.298492252,0.022198954,pos,ns,1.653667491,-0.0000244,0.000161184,-0.151460074,0.87971132,neg,ns,0.231644234,Dlx1,Dlx1_Intergenic_downstream,2,71538111,71538160,71538111,71538112,50,+,CGGATATAATTATCGAGGAGTCAAGATGTTATGCTAAAAACTATGCATTG,Distal Intergenic,2,71530780,71532689,1910,1,Dlx1-206,7331,Dlx1-201;Dlx1-203,Dlx1;Dlx1,0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,36,13390,ENSMUSG00000041911,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
17630,cg20168987,0.0000306,0.00000808,3.789069629,0.00018165,gain,ns,-0.00000472,0.0000137,-0.343630921,0.731356811,neg,ns,0.007044534,0.004021748,1.751609955,0.080829784,pos,ns,1.092428584,-0.000105311,0.000138308,-0.761428594,0.446979959,neg,ns,0.856973064,Rpgrip1l,Rpgrip1l_Exon,8,91304889,91304938,91304937,91304938,50,+,TGAACTTTCTCTTGCAGCTGCTCAATCATTTCTTCCATTTCCACATCTCG,"Exon (Rpgrip1l-201/Rpgrip1l, exon 4 of 26)",8,91217030,91313262,96233,2,Rpgrip1l-201,8324,Rpgrip1l-201;Rpgrip1l-204;Rpgrip1l-205;Rpgrip1l-202,Rpgrip1l;Rpgrip1l;Rpgrip1l;Rpgrip1l,0;0;5479;6142,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,4,244585,ENSMUSG00000033282,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5045,cg17568431,-0.000000747,0.00000116,-0.642044079,0.521319049,loss,ns,-0.000000679,0.00000198,-0.343502411,0.731453376,neg,ns,0.001071453,0.000578886,1.850887741,0.065136805,pos,ns,1.18617355,-0.0000333,0.0000199,-1.673021019,0.095331944,neg,ns,0.968324546,Map3k7,Map3k7_Exon,4,31994900,31994949,31994900,31994901,50,+,CGTAAAACTGCTTCATTTGGCAACATTCTGGATGTCCCTGAGATCGTCAT,"Exon (Map3k7-201/Map3k7, exon 12 of 17)",4,31964097,32023467,59371,1,Map3k7-201,30803,Gm11926-201;Map3k7-201;Map3k7-202;Map3k7-203;Map3k7-204;Map3k7-205;Map3k7-209;Map3k7-207,Gm11926;Map3k7;Map3k7;Map3k7;Map3k7;Map3k7;Map3k7;Map3k7,-3614;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,4,26409,ENSMUSG00000028284,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24884,cg13525872,0.00000946,0.00000604,1.566027409,0.118362388,gain,ns,0.00000353,0.0000103,0.343497019,0.731457427,pos,ns,0.008564225,0.003007498,2.847624585,0.004698838,pos,ns,2.328009573,-0.000290847,0.000103428,-2.812083842,0.00523597,neg,ns,0.09489248,Pitx2,Pitx2_Intron,3,129208866,129208915,129208866,129208867,50,-,CGCTAGGGAAATAAAAGCTTCATCTCAGATTATAGGTGGGTATTTTTGGA,"Intron (Pitx2-207/Pitx2, intron 3 of 4)",3,129199878,129219590,19713,1,Pitx2-207,8988,Pitx2-207;Pitx2-201;Pitx2-203;Pitx2-205;Pitx2-204,Pitx2;Pitx2;Pitx2;Pitx2;Pitx2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,24,18741,ENSMUSG00000028023,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
5841,cg27399105,-0.0000462,0.00000769,-6.013086866,5.12E-09,loss,yes,0.00000449,0.0000131,0.343493148,0.731460336,pos,ns,-0.007491216,0.003827892,-1.957008082,0.051243783,neg,ns,1.290358818,0.00020646,0.000131641,1.568358642,0.117817598,pos,ns,0.715537288,Mylk,Mylk_Exon,16,34956484,34956533,34956532,34956533,50,-,GGTGGAGAACAAGCTGGGCAGCAGGCAGGCCCAGGTCAACCTCACTGTCG,"Exon (Mylk-201/Mylk, exon 21 of 32)",16,34784921,35002420,217500,1,Mylk-201,171563,Mylk-201;Mylk-207;Mylk-204;Mylk-205,Mylk;Mylk;Mylk;Mylk,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,7,107589,ENSMUSG00000022836,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8260,cg14726968,-0.00003,0.00000697,-4.308372516,0.0000221,loss,ns,0.00000407,0.0000118,0.343474173,0.731474595,pos,ns,-0.000161431,0.003469513,-0.046528565,0.962918926,neg,ns,0.016410277,0.0000347,0.000119316,0.291090963,0.771176414,pos,ns,0.797706017,Zcchc7,Zcchc7_Intron,4,44905753,44905802,44905753,44905754,50,+,CGTGCATTCTGTTATTGTATGCTTGGCTTGTCAGCCTGCAGCTTTCTGAC,"Intron (Zcchc7-203/Zcchc7, intron 5 of 8)",4,44756568,44932203,175636,1,Zcchc7-203,149185,Zcchc7-203;Zcchc7-207;Zcchc7-205;Zcchc7-201;Zcchc7-202,Zcchc7;Zcchc7;Zcchc7;Zcchc7;Zcchc7,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,27,27,319885,ENSMUSG00000035649,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
16715,cg12808825,0.00000332,0.0000053,0.625625397,0.532020984,gain,ns,0.00000309,0.00000901,0.343423515,0.731512661,pos,ns,0.005983723,0.002639331,2.267135904,0.024070361,pos,ns,1.618517395,-0.000303744,0.0000908,-3.346442303,0.000919283,neg,ns,0.891885152,Adamtsl1,Adamtsl1_Exon,4,86243672,86243721,86243720,86243721,50,+,GTGTGTACCTTCTACTCAGAGGGTTGGCATTATTGTTCCTAACAGTGACG,"Exon (Adamtsl1-201/Adamtsl1, exon 10 of 13)",4,86053915,86428382,374468,1,Adamtsl1-203,189757,Adamtsl1-203;Adamtsl1-201;Adamtsl1-209;Adamtsl1-207,Adamtsl1;Adamtsl1;Adamtsl1;Adamtsl1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,10,77739,ENSMUSG00000066113,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7350,cg13100226,0.00000858,0.00000307,2.79411803,0.005528182,gain,ns,0.00000179,0.00000521,0.343413055,0.731520522,pos,ns,0.001449072,0.001527559,0.948619231,0.343553218,pos,ns,0.46400598,-0.0000817,0.0000525,-1.5554903,0.120849631,neg,ns,0.070451795,Crtac1,Crtac1_Intron,19,42380624,42380673,42380672,42380673,50,+,TAGTAACGACCTTAAAGAGTCTGCGAGGCTGAATGAATTGGTGCATCTCG,"Intron (Crtac1-203/Crtac1, intron 2 of 14)",19,42268287,42431785,163499,2,Crtac1-203,51112,Crtac1-203;Crtac1-201;Gm50184-201,Crtac1;Crtac1;Gm50184,0;0;-1523,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,8,72832,ENSMUSG00000042401,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
23112,cg17641835,0.0000213,0.00000816,2.608996808,0.009521061,gain,ns,-0.00000476,0.0000139,-0.343316123,0.731593363,neg,ns,0.009917519,0.004060633,2.442357667,0.015150012,pos,ns,1.819587031,-0.000296668,0.000139645,-2.124446704,0.034423953,neg,ns,0.558768869,Rnf220,Rnf220_Intron,4,117304393,117304442,117304393,117304394,50,-,CGGGAATTTCACTTGCTGTGCAGATCCCGCTGTCCGGCTGTCAGACACCC,"Intron (Rnf220-201/Rnf220, intron 3 of 14)",4,117271463,117497052,225590,2,Rnf220-201,192610,Rnf220-201;Rnf220-202;Rnf220-208;Rnf220-207,Rnf220;Rnf220;Rnf220;Rnf220,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,4,117304190,117304735,546,*,546,58,0.690476191,0.936645963,0.106227106,6.95E-46,CpGisland,TRUE,NA,NRS
371,cg15180682,-0.0000074,0.00000165,-4.488384014,0.0000101,loss,ns,0.000000961,0.0000028,0.343158669,0.73171169,pos,ns,0.000396372,0.000820279,0.483216627,0.629283031,pos,ns,0.201153979,-0.0000467,0.0000282,-1.655400422,0.09885524,neg,ns,0.962774708,Zfhx4,Zfhx4_Exon,3,5243807,5243856,5243807,5243808,50,-,CGTTGTGAGGTTTGTAACTACTCTACCACTACCAAAGGCAACCTCAGTAT,"Exon (Zfhx4-203/Zfhx4, exon 2 of 11)",3,5218526,5413165,194640,1,Zfhx4-203,25281,Zfhx4-203;Zfhx4-202;Zfhx4-201;Zfhx4-204;Zfhx4-205,Zfhx4;Zfhx4;Zfhx4;Zfhx4;Zfhx4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,23,77,80892,ENSMUSG00000025255,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8564,cg11007702,-0.0000305,0.00000689,-4.430320759,0.0000131,loss,ns,0.00000402,0.0000117,0.343144352,0.731722449,pos,ns,-0.009605203,0.003431553,-2.799083587,0.005445973,neg,ns,2.263924509,0.000218208,0.000118011,1.849053434,0.065402013,pos,ns,0.832825779,Btrc,Btrc_Exon,19,45338343,45338392,45338391,45338392,50,+,AGCACAAACCTTCTCATTTATATGTAAAGCAGTCATTAGTCATAGCTCCG,"Exon (Gm28578-209/Gm28578-209, exon 1 of 7)",19,45363734,45507736,144003,1,Btrc-204,-25342,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,30,98,12234,ENSMUSG00000025217,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3248,cg23885848,-0.0000084,0.00000563,-1.493865273,0.136227963,loss,ns,-0.00000328,0.00000956,-0.343021303,0.731814926,neg,ns,-0.003520784,0.002800236,-1.257316872,0.209585316,neg,ns,0.678639148,0.0000105,0.0000963,0.109084264,0.913206232,pos,ns,0.810683168,Gm11888,Gm11888_Intron,4,23341455,23341504,23341455,23341456,50,-,CGGCACGACTGGCTGCACAGCTTGATGCATAAATTCATGAGGCTGTTGCA,"Intron (Gm11884-201/Gm11884-201, intron 1 of 4)",4,23484820,23486020,1201,1,Gm11888-201,-143365,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,14,625462,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17483,cg14660630,0.0000726,0.0000085,8.543181895,6.00E-16,gain,yes,0.00000495,0.0000144,0.342967662,0.73185524,pos,ns,0.01489921,0.004228362,3.523636171,0.000489758,pos,ns,3.310018213,-0.000300075,0.000145413,-2.063606474,0.039887137,neg,ns,0.179315468,Nrxn1,Nrxn1_Exon,17,90454817,90454866,90454817,90454818,50,+,CGCAAGGATGCCGGTGACCTGTAGATTGCAATAGGCACTGAATGATGCTT,Promoter (<=1kb),17,90208288,90454822,246535,2,Nrxn1-221,0,Gm10493-201;Nrxn1-202;Nrxn1-207;Nrxn1-216;Nrxn1-204;Nrxn1-217;Nrxn1-209;Nrxn1-201;Nrxn1-213;Nrxn1-206;Nrxn1-221;Nrxn1-208;Nrxn1-222;Nrxn1-218;Nrxn1-226,Gm10493;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,22,27,18189,ENSMUSG00000024109,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
24061,cg05877118,0.0000169,0.00000371,4.560238576,0.00000737,gain,ns,-0.00000216,0.0000063,-0.342938257,0.73187734,neg,ns,0.001691341,0.001845712,0.916362821,0.360188933,pos,ns,0.443469635,-0.0000253,0.0000635,-0.39845579,0.690568536,neg,ns,0.937504631,Clybl,Clybl_Intron,14,122367346,122367395,122367394,122367395,50,-,TATACTGTACTTCACACTCGATTTATTCTCCAGATGGCGAGACTGTGCCG,"Intron (Clybl-201/Clybl, intron 2 of 7)",14,122181704,122402234,220531,1,Clybl-201,185642,Clybl-201;Clybl-202,Clybl;Clybl,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,13,69634,ENSMUSG00000025545,mapped to different genes,14,122367319,122367490,172,*,172,14,0.552325581,1.076923077,0.081395349,9.34E-10,CpGisland,TRUE,U15,NS
24390,cg07938834,-0.0000063,0.00000431,-1.460569851,0.145146268,loss,ns,-0.00000251,0.00000733,-0.342865164,0.731932276,neg,ns,0.000458382,0.002146911,0.213507573,0.831071433,pos,ns,0.080361646,-0.0000954,0.0000738,-1.292203609,0.197249066,neg,ns,0.940850596,Chd4,Chd4_Exon,6,125120349,125120398,125120397,125120398,50,-,CAGGTCAACTACAATGATGGCTCCCAGGAGGACCGAGGTGTGTGTGGCCG,"Exon (Chd4-203/Chd4, exon 26 of 39)",6,125095981,125130585,34605,1,Chd4-203,24368,Chd4-203;Chd4-201;Chd4-202;Chd4-204;Chd4-205,Chd4;Chd4;Chd4;Chd4;Chd4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,15,107932,ENSMUSG00000063870,conserved gene but different region,6,125120280,125120502,223,*,223,12,0.596412556,0.612918003,0.053811659,0.00000182,CpGisland,TRUE,U10,Tr-S
24320,cg08943377,-0.0000011,0.0000038,-0.288801135,0.772926587,loss,ns,0.00000222,0.00000646,0.342861723,0.731934862,pos,ns,0.000563913,0.001892866,0.297915095,0.765967529,pos,ns,0.115789641,0.0000259,0.0000651,0.398240662,0.690726926,pos,ns,0.900585477,Sema6d,Sema6d_Exon,2,124654195,124654244,124654195,124654196,50,+,CGCAGCACAGGCTGGACTTTCAGCTGATGTTGAAAATTCGAGACACACTT,"Exon (Sema6d-208/Sema6d, exon 7 of 21)",2,124089969,124667769,577801,1,Sema6d-208,564226,Sema6d-208;Sema6d-209;Sema6d-201;Sema6d-202;Sema6d-203;Sema6d-204;Sema6d-206;Sema6d-207;Sema6d-205,Sema6d;Sema6d;Sema6d;Sema6d;Sema6d;Sema6d;Sema6d;Sema6d;Sema6d,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,5,214968,ENSMUSG00000027200,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11447,cg23346796,0.0000104,0.00000228,4.574760992,0.0000069,gain,ns,0.00000133,0.00000387,0.342754171,0.7320157,pos,ns,0.001489992,0.001132856,1.315252996,0.18939689,pos,ns,0.722627156,-0.0000352,0.000039,-0.903409057,0.367010297,neg,ns,0.064762979,Loxl1,Loxl1_Exon,9,58312716,58312765,58312716,58312717,50,-,CGAGTTGAGCAAGCTGTACACCTGCCCGTTGTTCTCCCACTGGATCAGCT,Promoter (<=1kb),9,58287738,58313186,25449,2,Loxl1-201,421,Loxl1-201,Loxl1,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,16949,ENSMUSG00000032334,mapped to different genes,9,58312137,58312827,691,*,691,75,0.693198263,0.903504184,0.10853835,6.28E-60,CpGisland,TRUE,U3,Pr-B
22215,cg07100874,0.000000712,0.00000152,0.469804694,0.638824862,gain,ns,0.000000883,0.00000258,0.342599573,0.732131903,pos,ns,0.001476693,0.000754779,1.956459186,0.05130866,pos,ns,1.289809328,-0.0000659,0.000026,-2.536954629,0.011672233,neg,ns,0.961257835,Gm11679,Gm11679_Intergenic_downstream,11,111914065,111914114,111914113,111914114,50,-,CTCTGAAATTTGATTCAGGCACCAGATTATGAATAGATTTAACTAGTTCG,Distal Intergenic,11,112042800,112043578,779,2,Gm11679-201,129513,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,7,100504331,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9504,cg25635447,-0.00000758,0.0000022,-3.452736307,0.000632067,loss,ns,0.00000128,0.00000373,0.342512585,0.73219729,pos,ns,0.000775282,0.001092742,0.709483008,0.478558068,pos,ns,0.320065357,-0.0000133,0.0000376,-0.352786184,0.72448849,neg,ns,0.061231315,Fam120a,Fam120a_Exon,13,48967726,48967775,48967726,48967727,50,-,CGCCGCCCACCAGGCTGCCCCGGGCCAGCTTCTGCAGCTCCACCGGCACC,Promoter (<=1kb),13,48879219,48968017,88799,2,Fam120a-201,242,Fam120a-201,Fam120a,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,8,218236,ENSMUSG00000038014,mapped to different genes,13,48967332,48968743,1412,*,1412,188,0.749291785,0.958214214,0.133144476,2.67E-168,CpGisland,TRUE,U1,Pr-A
16588,cg13321925,-0.00000858,0.00000648,-1.325057684,0.186127845,loss,ns,0.00000377,0.000011,0.342346477,0.732322154,pos,ns,0.019284139,0.003223136,5.983035776,6.04E-09,pos,ns,8.219092735,-0.000782706,0.000110843,-7.061366571,1.09E-11,neg,yes,0.810652253,Bcas3,Bcas3_Intron,11,85613267,85613316,85613315,85613316,50,+,GCTGCTGATTTCTACTGGGAAATGTATCCTTGGACTGAAAATTGCATCCG,"Intron (Bcas3-205/Bcas3, intron 24 of 27)",11,85353167,85826058,472892,1,Bcas3-205,260100,Bcas3-205;Bcas3-206;Bcas3-201;Bcas3-202;Bcas3-216;Bcas3-212;Bcas3-203,Bcas3;Bcas3;Bcas3;Bcas3;Bcas3;Bcas3;Bcas3,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,24,192197,ENSMUSG00000059439,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21282,cg09200936,0.00000488,0.00000428,1.13842322,0.255822819,gain,ns,-0.00000249,0.00000728,-0.342300373,0.732356812,neg,ns,-0.004756199,0.00213171,-2.231165862,0.026385073,neg,ns,1.578641703,0.0000606,0.0000733,0.826283681,0.409278675,pos,ns,0.887733162,Gm5187,Gm5187_Intron,12,107082733,107082782,107082733,107082734,50,+,CGGCTGCAGATATATGCAATATTAAAGAGCGCTTATGAATTTTTGACATC,"Intron (Gm16086-201/Gm16086-201, intron 2 of 2)",12,107205076,107206066,991,2,Gm5187-201,123284,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,10,382635,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10194,cg09474015,0.00000603,0.00000137,4.393602346,0.0000153,gain,ns,-0.000000797,0.00000233,-0.342262652,0.732385169,neg,ns,0.001332845,0.000682568,1.952692107,0.05175578,pos,ns,1.286041145,-0.000018,0.0000235,-0.768732502,0.442637376,neg,ns,0.028125243,Hoxa9,Hoxa9_Exon,6,52225706,52225755,52225754,52225755,50,+,AGGTTTAATGCCATAAGGCCGGCTGGAGGGCAAGCCCGCGAAGGAGAGCG,"Exon (Hoxa9-201/Hoxa9, exon 1 of 2)",6,52223100,52227370,4271,2,Hoxa9-201,1615,Hoxa7-204;Hoxa9-201;Hoxa9-203;Hoxa9-202;Hoxa9-204;Hoxa9-205,Hoxa7;Hoxa9;Hoxa9;Hoxa9;Hoxa9;Hoxa9,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,14,15405,ENSMUSG00000038227,mapped to different genes,6,52225670,52226051,382,*,382,36,0.678010471,0.824460432,0.094240838,1.10E-26,CpGisland,TRUE,NA,NRS
1988,cg20615578,-0.0000108,0.00000254,-4.253385295,0.0000279,loss,ns,0.00000148,0.00000432,0.342240415,0.732401886,pos,ns,0.002229552,0.00126435,1.763396919,0.078818677,pos,ns,1.103370862,-0.000095,0.0000435,-2.185012203,0.029636378,neg,ns,0.949882612,Tfec,Tfec_Exon,6,16840468,16840517,16840468,16840469,50,-,CGGATCATTAGACTTTGGAATAAGAGTGCCAAGCTCCTTGATTCGGTAAT,"Exon (Tfec-201/Tfec, exon 5 of 7)",6,16833373,16898441,65069,2,Tfec-201,57924,Tfec-201;Tfec-205;Tfec-203;Tfec-202,Tfec;Tfec;Tfec;Tfec,0;0;57924;5479,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,23,21426,ENSMUSG00000029553,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21300,cg21949505,-0.0000173,0.0000133,-1.299233247,0.194829326,loss,ns,0.00000773,0.0000226,0.342191399,0.732438734,pos,ns,0.001302754,0.006622179,0.196725909,0.844170944,pos,ns,0.0735696,0.000210636,0.000227736,0.924912986,0.355730585,pos,ns,0.845111789,Pitpnc1,Pitpnc1_Exon,11,107216719,107216768,107216767,107216768,50,-,AATGCTGATTGCAAACTTTTATGTTGGTTTGTTCATGCATGTTTTTCTCG,"Exon (Pitpnc1-202/Pitpnc1, exon 9 of 10)",11,107207892,107337637,129746,2,Pitpnc1-201,120869,Pitpnc1-201;Pitpnc1-202,Pitpnc1;Pitpnc1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,3,71795,ENSMUSG00000040430,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10654,cg02193885,-0.00000685,0.00000243,-2.816694558,0.005163274,loss,ns,-0.00000141,0.00000413,-0.342147389,0.732471821,neg,ns,0.000553752,0.00121116,0.45720829,0.647841577,pos,ns,0.188531183,-0.0000262,0.0000417,-0.628948439,0.529845984,neg,ns,0.946433955,Enpp2,Enpp2_Exon,15,54877854,54877903,54877902,54877903,50,+,TCTTTCCTGTCTCCTCTTAGGGGCAACTTTCCTCTTAGGTCTCTTAGCCG,"Exon (Enpp2-204/Enpp2, exon 12 of 26)",15,54838901,54920002,81102,2,Enpp2-201,42099,Enpp2-201;Enpp2-204;Enpp2-202;Enpp2-203;Enpp2-207,Enpp2;Enpp2;Enpp2;Enpp2;Enpp2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,18606,ENSMUSG00000022425,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27544,cg18724036,0.0000836,0.0000189,4.416472616,0.0000139,gain,ns,-0.000011,0.0000322,-0.342109155,0.732500564,neg,ns,0.036474512,0.009425282,3.869859183,0.000132785,pos,ns,3.876852131,-0.001183098,0.000324135,-3.650018961,0.00030763,neg,ns,0.283169016,Tshz2,Tshz2_Intron,2,169666534,169666583,169666582,169666583,50,+,TCATTCTTCCCTATCCACTACATTAGGCATACTTAATCAAAATGTCTCCG,"Intron (Tshz2-202/Tshz2, intron 1 of 2)",2,169633013,169913093,280081,1,Tshz2-202,33521,Tshz2-202;Tshz2-201,Tshz2;Tshz2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,21,30,228911,ENSMUSG00000047907,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1807,cg07476673,0.0000333,0.00000696,4.780684448,0.0000027,gain,ns,-0.00000404,0.0000118,-0.342051223,0.732544118,neg,ns,0.003522496,0.003461781,1.017538636,0.309690732,pos,ns,0.509071791,0.000184956,0.00011905,1.553597394,0.121300768,pos,ns,0.849183959,Dll1,Dll1_Promoter,17,15378818,15378867,15378866,15378867,50,+,TGTTTAACTTCAGCGTTTCTATAGGAGCCTGTTGTAGTTTAACTCCTGCG,Promoter (1-2kb),17,15374794,15376872,2079,2,Dll1-205,-1946,Dll1-201;Dll1-203;Dll1-202;Dll1-205,Dll1;Dll1;Dll1;Dll1,-2842;-4746;-3718;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,9,9,13388,ENSMUSG00000014773,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
22491,cg00096813,0.00000356,0.00000593,0.599987597,0.548952816,gain,ns,0.00000345,0.0000101,0.341998225,0.732583962,pos,ns,0.004526285,0.002953881,1.532318103,0.126463808,pos,ns,0.898033744,-0.0000715,0.000101584,-0.704185777,0.481845723,neg,ns,0.787257776,Gm12830,Gm12830_Intron,4,114841471,114841520,114841471,114841472,50,-,CGGGGTGAAGTTGGGTGTCAGGGTAAAACAGGGGATAATAAAATCACTGG,"Intron (Gm12830-201/Gm12830, intron 1 of 3)",4,114821722,114856166,34445,1,Gm12830-201,19749,Gm12830-201,Gm12830,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,26,433746,ENSMUSG00000055198,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
1934,cg23932308,-0.0000076,0.00000677,-1.122398412,0.262561642,loss,ns,-0.00000393,0.0000115,-0.341943509,0.732625099,neg,ns,0.002925591,0.003370186,0.868080079,0.386022002,pos,ns,0.413387941,-0.0000577,0.0001159,-0.497807082,0.618972963,neg,ns,0.93568331,Rarb,Rarb_threeUTR,14,16508978,16509027,16509026,16509027,50,-,TATTGGCATCGATTCCTGGTGACTTTATTAATAACACAGTTCTTATCTCG,3' UTR,14,16430839,16575543,144705,2,Rarb-201,66516,Rarb-201;Rarb-207;Rarb-202;Rarb-206;Rarb-203,Rarb;Rarb;Rarb;Rarb;Rarb,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,16,218772,ENSMUSG00000017491,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25909,cg23664623,0.0000854,0.0000115,7.398066653,1.31E-12,gain,yes,0.00000671,0.0000196,0.341907177,0.732652415,pos,ns,0.014936961,0.005746078,2.599505504,0.009782509,pos,ns,2.009549759,-0.0000739,0.000197607,-0.373819048,0.708794478,neg,ns,0.77342952,Mid2,Mid2_Exon,X,140678194,140678243,140678242,140678243,50,+,TTGAACCCATTACTGCTTTCCAGTGTCCTACCTGCAGGTATGTTATCTCG,"Exon (Mid2-204/Mid2, exon 2 of 2)",20,140664599,140678708,14110,1,Mid2-204,13595,Mid2-204;Mid2-202;Mid2-201;Mid2-203,Mid2;Mid2;Mid2;Mid2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,11,23947,ENSMUSG00000000266,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14749,cg10495653,-0.0000174,0.00000339,-5.13525029,0.000000499,loss,yes,0.00000197,0.00000576,0.341673247,0.732828301,pos,ns,-0.001748095,0.001686337,-1.036622343,0.300719817,neg,ns,0.521837952,0.0000139,0.000058,0.239748658,0.810683557,pos,ns,0.913478932,Ptprd,Ptprd_Intron,4,77537860,77537909,77537908,77537909,50,+,GTGATTGCTCTATTAATCTAGTTTAACTGATACTAAAATCTGACAGAGCG,"Intron (Ptprd-205/Ptprd, intron 4 of 14)",4,76139382,78211895,2072514,2,Ptprd-205,673986,Ptprd-205;Ptprd-211;Ptprd-209;Ptprd-215;Ptprd-210,Ptprd;Ptprd;Ptprd;Ptprd;Ptprd,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,32,19266,ENSMUSG00000028399,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6638,cg26151482,0.0000104,0.00000169,6.167578122,2.16E-09,gain,yes,0.000000981,0.00000287,0.341541251,0.732927552,pos,ns,0.001250398,0.000841544,1.485839236,0.13833789,pos,ns,0.859058851,-0.0000311,0.0000289,-1.073516496,0.283874359,neg,ns,0.01807109,Msx1,Msx1_Exon,5,37893866,37893915,37893866,37893867,50,+,CGATCTGCAGACAATTGCTCGGGGTAATACTATCCGGAAAAAGCTGATAA,"Exon (Gm20052-201/Gm20052-201, exon 1 of 2)",5,37820485,37824583,4099,2,Msx1-201,-69283,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,14,17701,ENSMUSG00000048450,mapped to different genes,5,37893820,37893998,179,*,179,16,0.553072626,1.171849427,0.089385475,9.87E-12,CpGisland,TRUE,U13,Hc-P
26660,cg00807226,-0.00000868,0.00000441,-1.969215253,0.049818684,loss,ns,-0.00000256,0.00000748,-0.341483064,0.732971305,neg,ns,-0.003668261,0.002192723,-1.672925327,0.095350801,neg,ns,1.020675653,0.0000521,0.0000754,0.69102155,0.490069114,pos,ns,0.918386804,Bicd1,Bicd1_threeUTR,6,149550329,149550378,149550377,149550378,50,+,TAATTTATCAGTTTCTTGTAGATTGTCAGCAGCCTGCTGCCTCCGTACCG,3' UTR,6,149408984,149563329,154346,1,Bicd1-202,141345,Bicd1-202;Bicd1-203;Bicd1-201;Bicd1-207;Bicd1-205,Bicd1;Bicd1;Bicd1;Bicd1;Bicd1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,6,12121,ENSMUSG00000003452,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13163,cg06831856,0.000011,0.00000406,2.706348607,0.007179541,gain,ns,-0.00000236,0.00000691,-0.341139367,0.733229765,neg,ns,-0.001181835,0.00202308,-0.584176232,0.559526601,neg,ns,0.252179261,0.0000255,0.0000696,0.366786699,0.71402836,pos,ns,0.106313145,Tcf4,Tcf4_fiveUTR,18,69593538,69593587,69593538,69593539,50,+,CGGGCATGGGCGGCAACTCTTTGATGTACTACTATAATGGGAAAGCGGTA,Promoter (<=1kb),18,69593583,69651247,57665,1,Tcf4-220,0,Tcf4-201;Tcf4-207;Tcf4-240;Tcf4-254;Tcf4-246;Tcf4-206;Tcf4-202;Tcf4-257;Tcf4-232;Tcf4-248;Tcf4-231;Tcf4-205;Tcf4-253;Tcf4-238;Tcf4-249;Tcf4-219;Tcf4-227;Tcf4-250;Tcf4-229;Tcf4-260;Tcf4-226;Tcf4-216;Tcf4-256;Tcf4-230;Tcf4-221;Tcf4-234;Tcf4-258;Tcf4-217;Tcf4-247;Tcf4-252;Tcf4-218;Tcf4-243;Tcf4-237;Tcf4-239;Tcf4-262;Tcf4-223;Tcf4-212;Tcf4-204;Tcf4-225;Tcf4-222;Tcf4-261;Tcf4-255;Tcf4-203;Tcf4-241;Tcf4-236;Tcf4-228;Tcf4-220;Tcf4-242,Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,12,66,21413,ENSMUSG00000053477,conserved gene but different region,18,69593509,69593604,96,*,96,8,0.5625,1.059310345,0.083333333,0.00000859,CpGisland,TRUE,U1,Pr-A
22636,cg20645305,-0.000000663,0.000000977,-0.678058336,0.498240498,loss,ns,0.000000566,0.00000166,0.341102395,0.733257569,pos,ns,0.000384757,0.000486387,0.791050998,0.429519022,pos,ns,0.367017597,-0.0000298,0.0000167,-1.780826775,0.075919914,neg,ns,0.972269213,BC052040,BC052040_Intron,2,115509571,115509620,115509619,115509620,50,+,GCATAATTAATGGTAACATTGACAATAATACACAAATTAGCTAAGTGACG,"Intron (3110099E03Rik-202/3110099E03Rik-202, intron 1 of 2)",2,115581716,115778768,197053,1,BC052040-203,-72096,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,37,49,399568,ENSMUSG00000040282,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17422,cg02609650,0.0000388,0.00000822,4.716107042,0.00000364,gain,ns,-0.00000476,0.000014,-0.340996673,0.73333708,neg,ns,0.000438498,0.004092699,0.107141426,0.914746088,pos,ns,0.038699439,-0.0000277,0.000140748,-0.196840444,0.844081388,neg,ns,0.671209231,Ackr3,Ackr3_Exon,1,90214776,90214825,90214824,90214825,50,+,ATCGCAACTACAGGTACGAGCTGATGAAGGCCTTCATCTTCAAGTACTCG,"Exon (Ackr3-201/Ackr3, exon 2 of 2)",1,90203980,90216751,12772,1,Ackr3-201,10796,Ackr3-201;Ackr3-202,Ackr3;Ackr3,0;10770,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,12778,ENSMUSG00000044337,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24294,cg22979991,-0.0000172,0.00000577,-2.988774292,0.003024993,loss,ns,-0.00000334,0.0000098,-0.340978821,0.733350506,neg,ns,-0.004785412,0.002872375,-1.666012117,0.0967211,neg,ns,1.014478772,0.000169028,0.0000988,1.711141561,0.088055284,pos,ns,0.858019221,Pou3f1,Pou3f1_Intergenic_upstream,4,124520685,124520734,124520685,124520686,50,+,CGGGAGCAATCTCCTCGCCAGAGTGGAGAAGTGACACTAGCTTGCAGATC,Distal Intergenic,4,124656807,124660655,3849,1,Pou3f1-201,-136073,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,24,85,18991,ENSMUSG00000090125,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21384,cg19002296,0.0000204,0.00000911,2.235053731,0.0261259,gain,ns,0.00000528,0.0000155,0.340973585,0.733354443,pos,ns,-0.000337106,0.004533116,-0.074365182,0.940767776,neg,ns,0.026517567,0.000132471,0.000155893,0.849754696,0.396117262,pos,ns,0.754837149,Glis1,Glis1_Exon,4,107568354,107568403,107568354,107568355,50,-,CGAGAAGAGCCACATCGACCAGCGCAAGGGCGAGGACTTCACCTGCTTCT,"Exon (Glis1-201/Glis1, exon 4 of 11)",4,107434719,107635061,200343,1,Glis1-201,133635,Glis1-205;Glis1-201;Glis1-202,Glis1;Glis1;Glis1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,11,230587,ENSMUSG00000034762,conserved gene and region,4,107568237,107568551,315,*,315,20,0.650793651,0.60206422,0.063492064,1.09E-11,CpGisland,TRUE,NA,NRS
24637,cg14118363,0.000012,0.00000471,2.540453468,0.011558502,gain,ns,-0.00000273,0.00000801,-0.340964108,0.733361571,neg,ns,-0.004654515,0.002346394,-1.983688116,0.048172493,neg,ns,1.317200881,-0.0000276,0.0000807,-0.341821635,0.732716731,neg,ns,0.80109748,Gm34091,Gm34091_Promoter,6,127405802,127405851,127405802,127405803,50,+,CGCCTGCCAGCCGGGATGTCCTGTGTGACAGCAGATGCAAAGAGAATGAA,Promoter (5-6kb),6,127411130,127411733,604,1,Gm34091-201,-5279,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,5,102637222,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22656,cg22148191,-0.0000146,0.00000461,-3.1671819,0.001692513,loss,ns,-0.00000267,0.00000783,-0.340963693,0.733361883,neg,ns,-0.003388567,0.002294239,-1.476989704,0.140693536,neg,ns,0.851725855,-0.0000719,0.0000789,-0.911749395,0.362609108,neg,ns,0.048551075,Rab35,Rab35_fiveUTR,5,115631979,115632028,115632027,115632028,50,+,GAGGGAGGTGTTTCTGTCAGTTCCGGCTGTTTGTTCGGGAAGTGGATCCG,Promoter (<=1kb),5,115631908,115647736,15829,1,Rab35-201,71,Rab35-201;Rab35-202,Rab35;Rab35,0;-113,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,2,77407,ENSMUSG00000029518,conserved gene and region,5,115631432,115632564,1133,*,1133,156,0.747572816,1.000860722,0.137687555,1.78E-142,CpGisland,TRUE,U1,Pr-A
26155,cg14532282,0.0000315,0.0000102,3.095539175,0.002143887,gain,ns,-0.0000059,0.0000173,-0.34089918,0.733410403,neg,ns,0.021036655,0.005066756,4.151897931,0.0000427,pos,ns,4.369957006,-0.000457197,0.000174245,-2.623871745,0.009123898,neg,ns,0.132102239,Lmo4,Lmo4_Exon,3,144198330,144198379,144198378,144198379,50,-,CAGACTTCAAAGTGATATTAAATAACCAACTATTAGATTTACCTAGCACG,"Exon (Gm43445-201/Gm43445-201, exon 1 of 1)",3,144188530,144202396,13867,2,Lmo4-203,4017,Lmo4-203;Lmo4-201;Lmo4-202;Lmo4-207;Lmo4-206;Lmo4-208;Lmo4-205;Lmo4-204,Lmo4;Lmo4;Lmo4;Lmo4;Lmo4;Lmo4;Lmo4;Lmo4,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,18,54,16911,ENSMUSG00000028266,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22828,cg09466887,-0.00000814,0.00000367,-2.217704584,0.027299747,loss,ns,-0.00000212,0.00000623,-0.340859217,0.73344046,neg,ns,-0.001127503,0.001825788,-0.617543011,0.537329975,neg,ns,0.269758932,0.0000464,0.0000628,0.738502891,0.46076764,pos,ns,0.927758692,Meis2,Meis2_Intron,2,115979920,115979969,115979920,115979921,50,+,CGCTTAATTTGGCAGTGATTATGCGGGTTGCTGGCCCTCTAAACCCCTTT,"Intron (Meis2-201/Meis2, intron 8 of 11)",2,115863064,116065047,201984,2,Meis2-201,85078,Meis2-201;Meis2-203;Meis2-205;Meis2-206;Meis2-204;Meis2-202;Meis2-216;Meis2-217,Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,45,97,17536,ENSMUSG00000027210,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13701,cg07789509,0.0000918,0.0000177,5.181432992,0.000000398,gain,yes,-0.0000103,0.0000301,-0.340651785,0.733596478,neg,ns,0.026748766,0.00881869,3.033190313,0.002624382,pos,ns,2.580972937,-0.000666703,0.000303274,-2.198351867,0.028662855,neg,ns,0.471782463,Rapgef4,Rapgef4_Exon,2,72174405,72174454,72174453,72174454,50,+,TAACATTTTATTTTTCAGACACCTCTCATTGAACCTCACGTTCCTCTTCG,"Exon (Rapgef4-202/Rapgef4, exon 7 of 31)",2,71981240,72257474,276235,1,Rapgef4-202,193165,Rapgef4-202;Rapgef4-203;Rapgef4-201;Rapgef4-204,Rapgef4;Rapgef4;Rapgef4;Rapgef4,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,11,56508,ENSMUSG00000049044,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
3599,cg19907120,-0.0000667,0.00000883,-7.55376905,4.78E-13,loss,yes,0.00000511,0.000015,0.340604965,0.733631695,pos,ns,-0.011651961,0.0043946,-2.65142695,0.008427238,neg,ns,2.074314736,0.000206292,0.00015113,1.365000116,0.173242845,pos,ns,0.88100025,Klhl32,Klhl32_Intron,4,24669660,24669709,24669660,24669661,50,+,CGTCTGATGCCCAAATTAACCTTCTTGGCAAACTGAAAGAGGCACAAACT,"Intron (Klhl32-203/Klhl32, intron 5 of 7)",4,24612554,24800890,188337,2,Klhl32-203,131181,Klhl32-203;Klhl32-204;Klhl32-207;Klhl32-205;Klhl32-201;Klhl32-202;Klhl32-206,Klhl32;Klhl32;Klhl32;Klhl32;Klhl32;Klhl32;Klhl32,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,10,212390,ENSMUSG00000040387,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23574,cg11629335,0.0000189,0.00000495,3.806133666,0.000170092,gain,ns,0.00000287,0.00000842,0.340549327,0.733673545,pos,ns,0.014139079,0.002465742,5.734208517,2.33E-08,pos,ns,7.633449057,-0.000455161,0.0000848,-5.3676758,0.000000157,neg,yes,0.103738776,Cbx8,Cbx8_Promoter,11,119042864,119042913,119042864,119042865,50,+,CGGCCGGTGCCAGCGATACAGCTGTTTCTGTTTAAGCTTAAATACTTTCC,Promoter (1-2kb),11,119036305,119040969,4665,2,Cbx8-201,-1895,Cbx8-201;Cbx8-202;Cbx8-203,Cbx8;Cbx8;Cbx8,0;-2033;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,4,6,30951,ENSMUSG00000025578,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
12002,cg22567411,-0.00000369,0.00000405,-0.911959001,0.362498929,loss,ns,0.00000234,0.00000688,0.340480389,0.7337254,pos,ns,-0.003058043,0.002016202,-1.516734132,0.130352872,neg,ns,0.884879395,0.0000765,0.0000693,1.103466309,0.270680552,pos,ns,0.908244883,Slc4a10,Slc4a10_Exon,2,62265015,62265064,62265063,62265064,50,+,TCCTTACTGCTTCCTAAATCCTCCCAGGTCACCAATATCCGGTATCTTCG,"Exon (Slc4a10-206/Slc4a10, exon 12 of 27)",2,62046462,62326730,280269,1,Slc4a10-202,218553,Slc4a10-202;Slc4a10-206;Slc4a10-201;Slc4a10-203;Slc4a10-204,Slc4a10;Slc4a10;Slc4a10;Slc4a10;Slc4a10,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,12,94229,ENSMUSG00000026904,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18504,cg13267461,0.0000311,0.0000083,3.750126854,0.000210865,gain,ns,0.0000048,0.0000141,0.340440806,0.733755175,pos,ns,0.014351757,0.004130863,3.474275998,0.000585193,pos,ns,3.232701211,-0.000478262,0.00014206,-3.366615922,0.000856815,neg,ns,0.345990791,Get1,Get1_Exon,16,96151911,96151960,96151911,96151912,50,-,CGAGTTTGCCAGATATGCCAGGCTGGAAAGAAAGATCAACAAGATGACGG,"Exon (Get1-204/Get1, exon 2 of 4)",16,96145407,96154775,9369,1,Get1-204,6504,Get1-204;Get1-201;Get1-202;Get1-206;Get1-205;Get1-203,Get1;Get1;Get1;Get1;Get1;Get1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13837,cg26595493,0.0000548,0.00000546,10.03490095,1.05E-20,gain,yes,-0.00000316,0.00000927,-0.340431924,0.733761856,neg,ns,0.016924499,0.002717099,6.228885021,1.53E-09,pos,ns,8.815803851,-0.000259738,0.0000934,-2.779700937,0.005773283,neg,ns,0.120657215,Six1,Six1_Intron,12,73052092,73052141,73052140,73052141,50,-,TAATCAATCCTAATGCGATGGCAATTGGAGTCCCTGATGACTGCGGCTCG,"Intron (Six1-203/Six1, intron 1 of 1)",12,73043531,73053887,10357,2,Six1-203,1746,Six1-201;Six1-203,Six1;Six1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,18,20471,ENSMUSG00000051367,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
4305,cg22685258,0.0000256,0.00000582,4.401157457,0.0000148,gain,ns,-0.00000337,0.00000989,-0.340395523,0.733789239,neg,ns,0.004693771,0.002896266,1.620628775,0.106113982,pos,ns,0.974227389,-0.000144065,0.0000996,-1.446400519,0.149075205,neg,ns,0.091390688,Tnik,Tnik_fiveUTR,3,28263314,28263363,28263362,28263363,50,+,CGCCATCCACGCACAAGCAAAGAAGCATGTCCCATTTAAATACACCCACG,Promoter (<=1kb),3,28263214,28670585,407372,1,Tnik-207,100,Tnik-207;Tnik-201;Tnik-208;Tnik-209;Tnik-212;Tnik-203;Tnik-205;Tnik-218;Tnik-202;Tnik-206;Tnik-211;Tnik-214;Tnik-215,Tnik;Tnik;Tnik;Tnik;Tnik;Tnik;Tnik;Tnik;Tnik;Tnik;Tnik;Tnik;Tnik,0;0;0;0;0;0;0;-219;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,15,665113,ENSMUSG00000027692,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5468,cg18555199,-0.00000336,0.00000122,-2.755588781,0.006205293,loss,ns,-0.000000704,0.00000207,-0.34037929,0.733801449,neg,ns,-0.000136866,0.000606207,-0.225774107,0.821525893,neg,ns,0.085378744,-0.0000363,0.0000208,-1.739634764,0.082915686,neg,ns,0.016443455,Fxr1,Fxr1_fiveUTR,3,34020100,34020149,34020148,34020149,50,+,TTGCGGTTCCAACATGGCGGAGCTGACGGTGGAGGTTCGCGGCTCTAACG,Promoter (<=1kb),3,34020105,34069345,49241,1,Fxr1-206,0,Fxr1-201;Fxr1-202;Fxr1-207;Fxr1-206;Fxr1-204;Fxr1-208,Fxr1;Fxr1;Fxr1;Fxr1;Fxr1;Fxr1,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,4,14359,ENSMUSG00000027680,conserved gene and region,3,34019743,34020819,1077,*,1077,144,0.767873723,0.913776647,0.133704735,2.21E-129,CpGisland,TRUE,U1,Pr-A
6118,cg13862711,0.00000184,0.00000863,0.212712439,0.831691069,gain,ns,0.00000499,0.0000147,0.340259064,0.733891889,pos,ns,-0.002942537,0.004296772,-0.684824956,0.493966085,neg,ns,0.306302868,0.000439731,0.000147766,2.975867053,0.003151505,pos,ns,0.14290491,Lhx6,Lhx6_Intron,2,36104071,36104120,36104119,36104120,50,-,ATGAGTCCTAACTTTGTAGTGGGCATTTAAAGCCCTTCCCCACAAAAGCG,"Intron (Lhx6-201/Lhx6, intron 1 of 9)",2,36081953,36105271,23319,2,Lhx6-201,1151,Lhx6-202;Lhx6-204;Lhx6-201;Lhx6-205;Lhx6-203;Lhx6-208;Lhx6-209;Lhx6-207,Lhx6;Lhx6;Lhx6;Lhx6;Lhx6;Lhx6;Lhx6;Lhx6,0;0;0;0;0;0;-479;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,9,16874,ENSMUSG00000026890,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
18216,cg05756114,-0.0000181,0.0000128,-1.407688935,0.16022514,loss,ns,0.00000742,0.0000218,0.340054728,0.734045611,pos,ns,0.0088759,0.006392521,1.388482022,0.165987178,pos,ns,0.779925458,-0.000530628,0.000219838,-2.413717838,0.016370119,neg,ns,0.680664808,Ap3b1,Ap3b1_Intron,13,94510072,94510121,94510072,94510073,50,-,CGGCTGTAATTAAAGGTTAATTCACTGAGTCAGGATTAACAAGGAAAGTA,"Intron (Ap3b1-201/Ap3b1, intron 22 of 26)",13,94358960,94566317,207358,1,Ap3b1-201,151112,Ap3b1-201;Ap3b1-205,Ap3b1;Ap3b1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,55,11774,ENSMUSG00000021686,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8405,cg13196369,-0.0000193,0.00000557,-3.471102605,0.000591888,loss,ns,0.00000322,0.00000946,0.339978352,0.734103071,pos,ns,0.006192813,0.002772011,2.234050558,0.026192561,pos,ns,1.581822036,-0.000151334,0.0000953,-1.587484716,0.113422314,neg,ns,0.812325453,Zeb2,Zeb2_Intron,2,45097223,45097272,45097271,45097272,50,+,GTTAAAGAGACAAGGGCTTTTCACGTGTAATACCTCTGCTGCACATCTCG,"Intron (Zeb2-212/Zeb2, intron 3 of 10)",2,44983632,45117395,133764,2,Zeb2-212,20123,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219;Zeb2-211,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6809,cg06370458,-0.0000116,0.00000255,-4.557730558,0.00000745,loss,ns,0.00000147,0.00000433,0.339847701,0.734201367,pos,ns,0.002963796,0.00126936,2.334874591,0.020188033,pos,ns,1.694905988,-0.000198471,0.0000437,-4.546542461,0.00000783,neg,ns,0.965398881,Nek6,Nek6_Intron,2,38572200,38572249,38572200,38572201,50,+,CGAATTACCAGGCAGCAGATCATATTTGTCAGGAAGGATTGCATACATAA,"Intron (Nek6-201/Nek6, intron 7 of 9)",2,38511643,38594606,82964,1,Nek6-201,60557,Nek6-201;Nek6-203;Nek6-202,Nek6;Nek6;Nek6,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,5,59126,ENSMUSG00000026749,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25294,cg13618394,0.0000531,0.0000457,1.16030971,0.246815532,gain,ns,-0.0000264,0.0000777,-0.339826833,0.734217067,neg,ns,0.135168198,0.0227665,5.937153162,7.77E-09,pos,ns,8.109704334,-0.004299003,0.000782938,-5.490859892,8.34E-08,neg,yes,0.616143473,Lrp6,Lrp6_Exon,6,134479694,134479743,134479742,134479743,50,+,ATGATGGTGCGGTTTTGGCCACTGGTTTTGTTGGCACGCTCAATGCTGCG,"Exon (Lrp6-201/Lrp6, exon 12 of 23)",6,134446476,134566913,120438,2,Lrp6-201,87170,Lrp6-201,Lrp6,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,11,16974,ENSMUSG00000030201,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7631,cg08880576,-0.000126179,0.0000169,-7.47348845,8.04E-13,loss,yes,0.00000974,0.0000287,0.339749395,0.734275331,pos,ns,-0.022857835,0.008403089,-2.720170641,0.006893002,neg,ns,2.161591572,0.000833521,0.000288982,2.884340961,0.004197023,pos,ns,0.75902829,Gm5364,Gm5364_Intergenic_upstream,9,43506303,43506352,43506303,43506304,50,+,CGAGTGTCAGAGCAGAACAAATGCCAGTTTTAATGGACTTGCTAAATCAT,Distal Intergenic,9,43683053,43683941,889,1,Gm5364-201,-176701,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,4,384931,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21153,cg21623348,0.00019388,0.0000091,21.31655506,1.03E-62,gain,yes,-0.00000525,0.0000155,-0.339737292,0.734284437,neg,ns,0.012686112,0.004526821,2.802432632,0.005391155,pos,ns,2.268318178,0.0000825,0.000155677,0.52968726,0.596707916,pos,ns,0.244220415,Gm17304,Gm17304_Exon,5,106574941,106574990,106574941,106574942,50,+,CGACGTGGAAACCCTTCCACCAAAATGAGCTGTGATATCCTTTTGATGGC,"Exon (Gm29464-201/Gm29464-201, exon 1 of 1)",5,106609098,106609201,104,1,Gm17304-201,-34108,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,35,,NA,mapped to different genes,5,106574318,106574945,628,*,628,82,0.75477707,0.925521208,0.130573248,6.09E-73,CpGisland,TRUE,NA,NRS
9336,cg12319374,-0.00000772,0.00000421,-1.834796613,0.067493943,loss,ns,-0.00000243,0.00000714,-0.339652291,0.734348393,neg,ns,0.002498156,0.002093177,1.193475749,0.233595651,pos,ns,0.631535247,-0.000164589,0.000072,-2.2864616,0.022901376,neg,ns,0.969664268,Tenm3,Tenm3_Exon,8,48228907,48228956,48228955,48228956,50,+,GCGTGTCCTTGCCCTCGATGGTGAAGTGCAGGTTCTCCAGGTAGAAGGCG,"Exon (Tenm3-201/Tenm3, exon 29 of 29)",8,48227682,48674690,447009,2,Tenm3-201,445734,Tenm3-201;Tenm3-206,Tenm3;Tenm3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,39,23965,ENSMUSG00000031561,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24831,cg00900674,-0.0000101,0.00000899,-1.126890579,0.26066027,loss,ns,-0.00000519,0.0000153,-0.339547105,0.734427539,neg,ns,0.002268119,0.004476891,0.506628149,0.612775897,pos,ns,0.212698326,-0.000221729,0.00015396,-1.440173335,0.150827497,neg,ns,0.832222171,Rimbp2,Rimbp2_threeUTR,5,128759050,128759099,128759098,128759099,50,+,CTTTTTCAGCAGTTTCTTGCCTTTGGAAAGCAGCCCCTTTTTCTTTTTCG,3' UTR,5,128757791,128820069,62279,2,Rimbp2-205,60970,Piwil1-201;Piwil1-202;Rimbp2-205;Rimbp2-204;Rimbp2-209;Rimbp2-202;Rimbp2-201;Rimbp2-207;Rimbp2-208,Piwil1;Piwil1;Rimbp2;Rimbp2;Rimbp2;Rimbp2;Rimbp2;Rimbp2;Rimbp2,22876;21560;0;0;0;193956;194263;194387;86572,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,2,231760,ENSMUSG00000029420,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
209,cg15229748,0.0000515,0.0000189,2.720031598,0.006895833,gain,ns,-0.0000109,0.0000322,-0.339465405,0.734489015,neg,ns,0.029075376,0.009431306,3.082857942,0.002234498,pos,ns,2.65082007,-0.00067069,0.000324342,-2.067850622,0.039483385,neg,ns,0.32204184,Gm21992,Gm21992_threeUTR,19,4765403,4765452,4765403,4765404,50,-,CGGTCCCCTTTGCCGGGATGTTTCCATTGCTTCATGTTTCAGTAAACAAA,3' UTR,19,4742913,4811612,68700,2,Gm21992-203,46160,Gm21992-203;Rbm4b-207;Rbm4b-208;Rbm4b-209;Rbm4b-204;Rbm4b-205;Rbm4b-202;Rbm4b-201;Rbm4b-203;Rbm4b-210;Rbm4b-206,Gm21992;Rbm4b;Rbm4b;Rbm4b;Rbm4b;Rbm4b;Rbm4b;Rbm4b;Rbm4b;Rbm4b;Rbm4b,0;0;0;0;8860;8839;8838;0;8822;8498;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,21,48,102902673,ENSMUSG00000096370,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13032,cg26286023,0.00000407,0.00000456,0.891930658,0.373121889,gain,ns,-0.00000263,0.00000775,-0.339193485,0.734693637,neg,ns,-0.001636471,0.002271431,-0.720458248,0.471785795,neg,ns,0.326255139,-0.000135886,0.0000781,-1.739576346,0.082925968,neg,ns,0.865013799,Rora,Rora_Intron,9,69269080,69269129,69269080,69269081,50,-,CGGAATGCCAGGAAGTTAAAAGGACTTAGGGGAAAATGTCCTTTGGCCTT,"Intron (Rora-201/Rora, intron 2 of 10)",9,68653786,69388246,734461,1,Rora-201,615294,Rora-201;Rora-206,Rora;Rora,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,19,19883,ENSMUSG00000032238,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
829,cg17459848,-0.000000131,0.000000936,-0.140407804,0.888428978,loss,ns,0.000000539,0.00000159,0.339168375,0.734712533,pos,ns,0.000668741,0.000465823,1.435610393,0.152121464,pos,ns,0.817809503,-0.0000356,0.000016,-2.219534567,0.027173809,neg,ns,0.97317252,1810013L24Rik,1810013L24Rik_Exon,16,8855880,8855929,8855880,8855881,50,+,CGAAGGAGAAATGGACTCCATGATGTCGATTTGAACACTTTCATATCAGA,"Exon (1810013L24Rik-201/1810013L24Rik, exon 4 of 4)",16,8830100,8858922,28823,1,1810013L24Rik-201,25780,1810013L24Rik-201,1810013L24Rik,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,18,19,69053,ENSMUSG00000022507,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26304,cg07361764,-0.0000188,0.00000399,-4.710510984,0.00000374,loss,ns,0.0000023,0.00000679,0.339127043,0.734743638,pos,ns,0.002221195,0.001987959,1.11732408,0.264720975,pos,ns,0.577211647,-0.000178772,0.0000684,-2.614941631,0.009360511,neg,ns,0.904363035,Ralgapa2,Ralgapa2_Intron,2,146325165,146325214,146325213,146325214,50,-,CTTACCATTGTTTTCTCTCAGAAGCTTTGTTGAGCAAAGACTGCATCACG,"Intron (Ralgapa2-202/Ralgapa2, intron 37 of 40)",2,146239879,146512004,272126,2,Ralgapa2-202,186790,Ralgapa2-202;Ralgapa2-211;Ralgapa2-210;Ralgapa2-205;Ralgapa2-208,Ralgapa2;Ralgapa2;Ralgapa2;Ralgapa2;Ralgapa2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,26,241694,ENSMUSG00000037110,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16662,cg15237598,0.00000501,0.0000043,1.164775403,0.245005458,gain,ns,-0.00000248,0.00000731,-0.339084212,0.734775871,neg,ns,-0.000650305,0.002140827,-0.303763582,0.761511793,neg,ns,0.118323367,0.000180258,0.0000736,2.448397497,0.014903225,pos,ns,0.914335837,Adamts5,Adamts5_Exon,16,85887904,85887953,85887904,85887905,50,-,CGTCTGCCATTCCCAGGGTGTCACATGAATGATGCCCACATAAATCCTGC,"Exon (Adamts5-201/Adamts5, exon 2 of 8)",16,85856173,85901828,45656,2,Adamts5-201,13875,Adamts5-201,Adamts5,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,3,23794,ENSMUSG00000022894,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19095,cg25673593,0.0000369,0.00000786,4.703606085,0.00000386,gain,ns,0.00000452,0.0000133,0.339058368,0.734795321,pos,ns,0.028464322,0.003909586,7.280649167,2.75E-12,pos,yes,11.56001616,-0.001437171,0.00013445,-10.68923369,6.53E-23,neg,yes,0.263769091,Ppp1r1b,Ppp1r1b_Promoter,11,98342478,98342527,98342526,98342527,50,-,AACAGCTGTTTTAACTTTAGGGCCTCTTCTTCAGGGAATGGAAGCAGCCG,Promoter (5-6kb),11,98348404,98357796,9393,1,Ppp1r1b-201,-5926,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,16,16,19049,ENSMUSG00000061718,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
11829,cg17386957,-0.00000545,0.00000338,-1.609047705,0.108623766,loss,ns,-0.00000195,0.00000575,-0.339016647,0.734826719,neg,ns,0.000383631,0.00168453,0.227737768,0.82000024,pos,ns,0.086186021,-0.0000758,0.0000579,-1.309093151,0.19147232,neg,ns,0.912528648,Rpl7l1-ps1,Rpl7l1-ps1_Intergenic_upstream,X,60994424,60994473,60994472,60994473,50,+,CTACATTTTAAAATTCTGTGTGGTGCTATCAGGCACCCCCGGTCTCTTCG,Distal Intergenic,20,60971990,60972714,725,2,Rpl7l1-ps1-201,-21710,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,4,207216,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7248,cg19292691,0.00000959,0.00000195,4.923151849,0.00000139,gain,yes,-0.00000112,0.00000331,-0.338983137,0.734851939,neg,ns,0.002663643,0.000969535,2.747341087,0.006359647,pos,ns,2.196567013,-0.0000491,0.0000333,-1.472140298,0.141997474,neg,ns,0.034938521,Gm8707,Gm8707_Intron,9,41736197,41736246,41736197,41736198,50,-,CGGAATATTAAAACCATGATCAGAATTCCACTGAAATGCTGAGAGTCTGC,"Intron (Gm35835-202/Gm35835-202, intron 2 of 4)",9,41654303,41655282,980,1,Gm8707-201,81943,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,12,667566,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
14778,cg07815787,-0.00000214,0.0000013,-1.64301064,0.101394593,loss,ns,0.000000749,0.00000221,0.338948359,0.734878112,pos,ns,0.000271377,0.000647491,0.419120731,0.675418164,pos,ns,0.170427264,-0.00000448,0.0000223,-0.201043392,0.840796488,neg,ns,0.96725012,Enox1,Enox1_Exon,14,77611310,77611359,77611358,77611359,50,-,AACGCTTCTACCAGACAAAAAGCTTGGGACCATTTCTCGAAAGCCCAGCG,"Exon (Enox1-201/Enox1, exon 12 of 19)",14,77156763,77721407,564645,1,Enox1-201,454547,Enox1-201;Enox1-204;Enox1-203,Enox1;Enox1;Enox1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,4,239188,ENSMUSG00000022012,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
551,cg14355611,0.0000255,0.00000401,6.347060203,7.78E-10,gain,yes,-0.00000231,0.00000682,-0.338693654,0.735069813,neg,ns,0.005009158,0.001996799,2.508593622,0.012631546,pos,ns,1.898543503,-0.0000899,0.0000687,-1.308585798,0.191644009,neg,ns,0.098249831,Dlx6,Dlx6_Exon,6,6869329,6869378,6869377,6869378,50,-,TTGTTGAGCAACTTCCACGCTCAGTCAGTCTTCAGAATGGTTTAAAACCG,"Exon (Dlx6os1-201/Dlx6os1-201, exon 2 of 3)",6,6863798,6865430,1633,1,Dlx6-204,5580,Dlx6-203;Dlx6-202;Dlx6-201;Dlx6-204,Dlx6;Dlx6;Dlx6;Dlx6,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,36,13396,ENSMUSG00000029754,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
7848,cg15505890,-0.0000115,0.00000725,-1.590743661,0.1126865,loss,ns,-0.00000417,0.0000123,-0.338618925,0.735126059,neg,ns,-0.004103483,0.003608454,-1.137185824,0.256338831,neg,ns,0.5911856,0.0000992,0.000124094,0.799793777,0.424442717,pos,ns,0.77859823,Pax5,Pax5_Intergenic_downstream,4,44519025,44519074,44519025,44519026,50,-,CGGACAATTACTGCTCTTGATTAACAACAAGAACTGATGAGTTGGCCTTT,Distal Intergenic,4,44531504,44645723,114220,2,Pax5-220,126698,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,45,18507,ENSMUSG00000014030,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
685,cg15213173,-0.0000367,0.00000777,-4.729559508,0.00000342,loss,ns,-0.00000447,0.0000132,-0.338596421,0.735142998,neg,ns,-0.002368443,0.003866539,-0.612548651,0.540623886,neg,ns,0.26710477,-0.000169277,0.00013297,-1.273048866,0.203954552,neg,ns,0.915357453,Gm2448,Gm2448_Intergenic_downstream,8,8025966,8026015,8026014,8026015,50,-,AAAGTCCTCTGGTTTCCATGGCAAATGGGGCCATTATTTCTTCTGAAACG,Distal Intergenic,8,8454871,8455429,559,2,Gm2448-201,429463,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,100416079,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4627,cg14751398,-0.00000131,0.00000246,-0.532033727,0.595083715,loss,ns,-0.00000142,0.00000418,-0.33852579,0.735196163,neg,ns,0.000848556,0.001225572,0.692375416,0.489219899,pos,ns,0.310495886,0.00000659,0.0000421,0.156321246,0.875881561,pos,ns,0.072280513,E2f3,E2f3_fiveUTR,13,29985977,29986026,29985977,29985978,50,+,CGGCAGCTGAAAAATGGCTCCAGGAAGCTGCTGCTGACAATGAATGAAGG,Promoter (<=1kb),13,29906575,29986063,79489,2,E2f3-201,37,E2f3-203;E2f3-204;E2f3-201;E2f3-202,E2f3;E2f3;E2f3;E2f3,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,10,13557,ENSMUSG00000016477,conserved gene and region,13,29985584,29985978,395,*,395,35,0.612658228,0.948411882,0.088607595,5.51E-25,CpGisland,TRUE,U1,Pr-A
8352,cg07512021,0.0000801,0.00000974,8.219992345,5.63E-15,gain,yes,-0.0000056,0.0000165,-0.338438755,0.735261675,neg,ns,0.019713182,0.004847229,4.066897458,0.0000605,pos,ns,4.218412018,-0.000362278,0.000166696,-2.173285393,0.030515666,neg,ns,0.368845773,Zeb2,Zeb2_Intron,2,45044820,45044869,45044868,45044869,50,-,TGTGAGAACAGGCAATCAGGAAAGCTAATTTCTTAATTAGCTCTGCTCCG,"Intron (Zeb2-212/Zeb2, intron 3 of 10)",2,44983632,45117395,133764,2,Zeb2-212,72526,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-218;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2424,cg20251994,0.0000107,0.00000574,1.856049931,0.064395223,gain,ns,0.0000033,0.00000975,0.338390286,0.73529816,pos,ns,-0.002811533,0.002856046,-0.984414792,0.325679287,neg,ns,0.487209861,0.0000988,0.0000982,1.00552876,0.315426527,pos,ns,0.891505724,Olig3,Olig3_Intergenic_downstream,10,19401355,19401404,19401403,19401404,50,-,TGGACTAATCACAACAGATCTGGGGAAATAATGGGCACCAGATGTTATCG,Distal Intergenic,10,19356533,19358604,2072,1,Olig3-201,44871,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,9,94222,ENSMUSG00000045591,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8961,cg22095424,0.00000255,0.00000387,0.659143912,0.510292678,gain,ns,0.00000223,0.00000658,0.338285142,0.735377308,pos,ns,0.002308862,0.001927707,1.197724253,0.231939358,pos,ns,0.63462555,-0.0000853,0.0000663,-1.286935255,0.199076976,neg,ns,0.918351334,Kcnc1,Kcnc1_Exon,7,46435197,46435246,46435197,46435198,50,+,CGAACGAAGACTGCCCCCACATAGACCAGGCCCTCACTCCCGATGAGGGC,"Exon (Kcnc1-203/Kcnc1, exon 3 of 4)",7,46397648,46438704,41057,1,Kcnc1-203,37549,Kcnc1-201;Kcnc1-203,Kcnc1;Kcnc1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,14,16502,ENSMUSG00000058975,conserved gene but different region,7,46435182,46435318,137,*,137,14,0.656934307,0.970647773,0.102189781,3.95E-11,CpGisland,TRUE,U15,NS
13530,cg16534861,-0.00000163,0.00000297,-0.549124424,0.583315377,loss,ns,-0.00000171,0.00000505,-0.338278711,0.735382149,neg,ns,-0.001242744,0.001478404,-0.840597861,0.401221138,neg,ns,0.396616194,0.0000376,0.0000508,0.739672845,0.460058285,pos,ns,0.969208966,Gm10172,Gm10172_Intergenic_downstream,7,71190212,71190261,71190212,71190213,50,-,CGTGGGGGATGACAGCCTTACCTTTTCGCGCTTAATTGGCCGTATTGTCT,Distal Intergenic,7,71332363,71332921,559,2,Gm10172-201,142709,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,31,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23663,cg21913681,0.00006,0.0000073,8.20920118,6.06E-15,gain,yes,-0.0000042,0.0000124,-0.338249984,0.735403775,neg,ns,0.008983709,0.003634874,2.471532385,0.013990548,pos,ns,1.854165271,-0.000305053,0.000125003,-2.440363303,0.015232292,neg,ns,0.066935444,Tbx3,Tbx3_fiveUTR,5,119670890,119670939,119670938,119670939,50,+,CAGCACTCGACCTGTGAAAACCACGCCTATGCAGCAACACAATTGGTCCG,Promoter (<=1kb),5,119670669,119673663,2995,1,Tbx3-206,221,Tbx3-206;Tbx3-202;Tbx3-203;Tbx3-201;Tbx3-204,Tbx3;Tbx3;Tbx3;Tbx3;Tbx3,0;0;0;-79;-4506,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,7,21386,ENSMUSG00000018604,conserved gene but different region,5,119670094,119671068,975,*,975,88,0.649230769,0.857005873,0.09025641,1.36E-62,CpGisland,TRUE,NA,NRS
128,cg22452485,-5.33E-08,0.00000119,-0.044718947,0.964360123,loss,ns,0.000000684,0.00000202,0.338238424,0.735412477,pos,ns,0.000933226,0.000592676,1.57459689,0.11636949,pos,ns,0.934160869,-0.000029,0.0000204,-1.423417664,0.155620758,neg,ns,0.969385319,Kdm2a,Kdm2a_Exon,19,4324397,4324446,4324397,4324398,50,-,CGGAAGACAGACATCCAGACCTCCCGCTGCATCCAGCTTTCGTCTCCATC,"Exon (Kdm2a-201/Kdm2a, exon 17 of 21)",19,4314419,4398285,83867,2,Kdm2a-201,73839,Kdm2a-201;Kdm2a-202;Kdm2a-213;Kdm2a-211;Kdm2a-207;Kdm2a-214;Kdm2a-212;Kdm2a-210,Kdm2a;Kdm2a;Kdm2a;Kdm2a;Kdm2a;Kdm2a;Kdm2a;Kdm2a,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,21,30,225876,ENSMUSG00000054611,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21740,cg25169542,-0.00000541,0.00000106,-5.081288705,0.000000649,loss,yes,-0.000000612,0.00000181,-0.338175388,0.73545993,neg,ns,-0.000914584,0.00053003,-1.725532525,0.085428068,neg,ns,1.068399418,-0.00000162,0.0000182,-0.089124886,0.929040211,neg,ns,0.980596287,Zfhx3,Zfhx3_Exon,8,108951191,108951240,108951191,108951192,50,+,CGCACTCAAATGACCAATCTGCAGCTGAAGGTCCTCAAGTCATGCTTTAA,"Exon (Zfhx3-204/Zfhx3, exon 15 of 16)",8,107942644,108961630,1018987,1,Zfhx3-204,1008547,Zfhx3-204;Zfhx3-201,Zfhx3;Zfhx3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,46,177,11906,ENSMUSG00000038872,conserved gene and region,8,108950856,108951192,337,*,337,26,0.578635015,0.921733642,0.077151335,3.97E-17,CpGisland,TRUE,U10,Tr-S
8696,cg19210574,0.0000298,0.00000636,4.68216874,0.00000425,gain,ns,-0.00000365,0.0000108,-0.338092628,0.735522233,neg,ns,0.006511131,0.003163734,2.058052631,0.040420794,pos,ns,1.393395161,-0.000202736,0.000108801,-1.863374436,0.06335504,neg,ns,0.025894606,Kcnn2,Kcnn2_fiveUTR,18,45559456,45559505,45559456,45559457,50,+,CGCTCCCGACCATAACGCATTGCGCAGGGTGCACCACCGCTTGGTCTCCC,Promoter (<=1kb),18,45559469,45671249,111781,1,Kcnn2-207,0,Gm31907-202;Kcnn2-205;Kcnn2-201;Kcnn2-207;Kcnn2-206;Kcnn2-202;Kcnn2-208;Kcnn2-203,Gm31907;Kcnn2;Kcnn2;Kcnn2;Kcnn2;Kcnn2;Kcnn2;Kcnn2,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,8,140492,ENSMUSG00000054477,conserved gene but different region,18,45559377,45559494,118,*,118,12,0.677966102,0.932192232,0.101694915,1.49E-09,CpGisland,TRUE,U3,Pr-B
9301,cg19178879,-0.00000248,0.00000102,-2.41956913,0.016114016,loss,ns,-0.000000587,0.00000174,-0.337980209,0.735606866,neg,ns,-0.000452355,0.000509249,-0.888278592,0.37507961,neg,ns,0.425876544,0.00000754,0.0000175,0.430808974,0.666906661,pos,ns,0.033025359,Nr4a3,Nr4a3_Promoter,4,48045092,48045141,48045092,48045093,50,+,CGTCACATTGACGTCTCGCATTCCAGGCACTCTATGGAGAGGCCGCTAGG,Promoter (<=1kb),4,48045153,48086445,41293,1,Nr4a3-201,-12,Nr4a3-201;Nr4a3-204;Nr4a3-203,Nr4a3;Nr4a3;Nr4a3,0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,6,20,18124,ENSMUSG00000028341,mapped to different genes,4,48045031,48045109,79,*,79,9,0.670886076,1.058035714,0.113924051,0.000000116,CpGisland,TRUE,U2,Pr-W
22521,cg10172301,0.00000249,0.00000182,1.369318476,0.171890937,gain,ns,-0.00000104,0.00000309,-0.337954485,0.735626232,neg,ns,0.001811137,0.000904879,2.001524739,0.04620709,pos,ns,1.335291385,-0.0000523,0.0000311,-1.681918066,0.093591736,neg,ns,0.085571392,Foxd2,Foxd2_fiveUTR,4,114908779,114908828,114908827,114908828,50,-,TCTCGGAGGACATGATCTCGCAGCAGCAGCTGCCCAGGGTCATGGTGCCG,Promoter (<=1kb),4,114906282,114908873,2592,2,Foxd2-201,45,Foxd2-201,Foxd2,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,3,17301,ENSMUSG00000055210,conserved gene and region,4,114907619,114908993,1375,*,1375,171,0.731636364,0.932414105,0.124363636,3.25E-147,CpGisland,TRUE,U3,Pr-B
8135,cg13086047,0.000029,0.000011,2.651869707,0.008416445,gain,ns,0.00000628,0.0000186,0.33780355,0.735739868,pos,ns,0.011976272,0.00545039,2.197323722,0.028736892,pos,ns,1.541560203,-0.000371648,0.000187438,-1.982773955,0.048275096,neg,ns,0.727206315,Pax2,Pax2_Intron,19,44783592,44783641,44783640,44783641,50,-,ACTAAGTATACATACATTATATCATTCTATTGATTTGTAAAAAGTTCCCG,"Intron (Pax2-203/Pax2, intron 3 of 9)",19,44756045,44837851,81807,1,Pax2-203,27547,Pax2-203;Pax2-201;Pax2-202,Pax2;Pax2;Pax2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,35,166,18504,ENSMUSG00000004231,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24852,cg02973003,0.0000589,0.00000759,7.765915373,1.19E-13,gain,yes,-0.00000435,0.0000129,-0.337738215,0.735789059,neg,ns,0.005222537,0.003776307,1.38297453,0.16766797,pos,ns,0.775549894,0.0000946,0.000129867,0.728443947,0.466891772,pos,ns,0.213436275,Gdf11,Gdf11_Intron,10,128889294,128889343,128889342,128889343,50,+,CTGACAAACACCTCCCCCGATTAGCAGAGCACAAGTCTCTTATTAAAGCG,"Intron (Gdf11-201/Gdf11, intron 1 of 2)",10,128882295,128891718,9424,2,Gdf11-201,2375,Gdf11-201,Gdf11,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,7,14561,ENSMUSG00000025352,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24449,cg14662402,-0.00000154,0.000000735,-2.091657017,0.037282705,loss,ns,-0.000000422,0.00000125,-0.337731827,0.735793869,neg,ns,0.000181508,0.000365815,0.4961729,0.620124038,pos,ns,0.207521434,0.000004,0.0000126,0.31793898,0.750745287,pos,ns,0.979004655,Ago3,Ago3_Exon,4,126345479,126345528,126345479,126345480,50,-,CGAAGTACATTGTGCGTAAGGTATCTTGGTGAATCTGTACAGCCTTGGCA,"Exon (Ago3-201/Ago3, exon 19 of 19)",4,126331704,126350320,18617,2,Ago3-204,4792,Ago3-204;Ago3-201;Ago3-203,Ago3;Ago3;Ago3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,8,214150,ENSMUSG00000028842,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18738,cg07906416,0.00000143,0.00000444,0.322045604,0.747635207,gain,ns,-0.00000255,0.00000755,-0.337694399,0.735822049,neg,ns,-0.005369063,0.002211747,-2.427521192,0.015771642,neg,ns,1.802123101,-0.00000719,0.0000761,-0.094479228,0.92478952,neg,ns,0.81979206,Dscam,Dscam_Exon,16,97038990,97039039,97039038,97039039,50,+,TTGCCTCTCATGGTTTTCTGGTCCTCCACACGGACTGTATAGGGCTCCCG,"Exon (Dscam-201/Dscam, exon 3 of 33)",16,96590840,97170752,579913,2,Dscam-201,131713,Dscam-201,Dscam,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,12,13508,ENSMUSG00000050272,conserved gene and region,16,97038886,97039039,154,*,154,10,0.558441558,0.844298246,0.064935065,0.00000352,CpGisland,TRUE,U15,NS
4641,cg01384290,0.0000581,0.0000113,5.131369668,0.000000508,gain,yes,-0.0000065,0.0000192,-0.337690345,0.735825101,neg,ns,0.016733554,0.005638312,2.967830357,0.003232707,pos,ns,2.490433667,-0.000450579,0.000193901,-2.323758105,0.02078481,neg,ns,0.324760087,Mecom,Mecom_Intron,3,30018323,30018372,30018371,30018372,50,-,ACAAGGTCAGGGCACCTAACAGCTCAGACATGGGCCTTTGCAGTGGCTCG,"Intron (Mecomos-201/Mecomos-201, intron 2 of 3)",3,29951299,30509733,558435,2,Mecom-212,491361,Mecom-212;Mecom-202;Mecom-203;Mecom-210;Mecom-213;Mecom-207;Mecom-208;Mecom-211,Mecom;Mecom;Mecom;Mecom;Mecom;Mecom;Mecom;Mecom,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,80,14013,ENSMUSG00000027684,conserved gene and region,3,30018371,30018460,90,*,90,8,0.5,1.428571429,0.088888889,0.00000534,CpGisland,TRUE,U15,NS
16600,cg03399957,0.0000366,0.00000403,9.083566769,1.27E-17,gain,yes,-0.00000231,0.00000685,-0.337561049,0.735922454,neg,ns,0.008223693,0.002006343,4.098847569,0.0000531,pos,ns,4.275079447,-0.0000909,0.000069,-1.316900126,0.188844758,neg,ns,0.115245235,Six3,Six3_Exon,17,85621443,85621492,85621443,85621444,50,+,CGGCGGCTCCAGGGCCCCCCCGGAAGAGTTGTCCATGTTCCAGCTGCCCA,"Exon (Six3-202/Six3, exon 2 of 3)",17,85613608,85625222,11615,1,Six3-202,7835,Six3-202;Six3-203;Six3-201,Six3;Six3;Six3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,24,20473,ENSMUSG00000038805,conserved gene and region,17,85621296,85621464,169,*,169,30,0.810650888,1.124168514,0.177514793,8.81E-32,CpGisland,TRUE,NA,NRS
18781,cg07991667,0.00025506,0.0000189,13.48657743,6.19E-33,gain,yes,-0.0000108,0.0000321,-0.337513602,0.73595818,neg,ns,0.023240411,0.00941277,2.469029884,0.014086822,pos,ns,1.851186964,-0.000284187,0.000323704,-0.877920893,0.380666552,neg,ns,0.542080485,Usp35,Usp35_Exon,7,97325354,97325403,97325354,97325355,50,+,CGCCACAGCTGCGCCAGGAGCCCGCTCACCTGCTGGGCCTGCTCTAGGAA,Promoter (<=1kb),7,97309380,97325964,16585,2,Usp35-202,561,Usp35-202;Usp35-201;Usp35-205,Usp35;Usp35;Usp35,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,244144,ENSMUSG00000035713,conserved gene and region,7,97325218,97326011,794,*,794,98,0.738035265,0.911062196,0.123425693,2.78E-84,CpGisland,TRUE,U13,Hc-P
22273,cg21477588,-0.0000481,0.0000101,-4.777262483,0.00000275,loss,ns,0.00000577,0.0000171,0.337444153,0.736010474,pos,ns,-0.00453791,0.00500621,-0.906456106,0.365398508,neg,ns,0.43723323,-0.0000654,0.000172163,-0.379752353,0.704389277,neg,ns,0.849423103,Tead1,Tead1_Intron,7,112812474,112812523,112812522,112812523,50,+,ATTCCTCAGGGGACCACTAATAACTACCACATCTGTCTTTTCATCTTCCG,"Intron (Tead1-203/Tead1, intron 2 of 11)",7,112679318,112899459,220142,1,Tead1-203,133156,Tead1-203;Tead1-216;Tead1-217;Tead1-201;Tead1-204;Tead1-214;Tead1-206;Tead1-202;Tead1-211;Tead1-207;Tead1-210;Tead1-212;Tead1-208;Tead1-209,Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,16,21676,ENSMUSG00000055320,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4486,cg24654067,-0.0000353,0.0000102,-3.45393085,0.000629378,loss,ns,0.00000586,0.0000174,0.337412277,0.736034475,pos,ns,0.001446251,0.005089968,0.284137495,0.776494705,pos,ns,0.109861501,-0.000151277,0.000175044,-0.864227209,0.388131297,neg,ns,0.767176674,Ntm,Ntm_Intron,9,29075199,29075248,29075199,29075200,50,+,CGAATTGGACGCACATTCAACTGGAAATGAAAATTTTATGACTGTTCTCA,"Intron (Ntm-201/Ntm, intron 4 of 7)",9,28994750,29963129,968380,2,Ntm-201,887881,Ntm-201;Ntm-203;Ntm-202;Ntm-205;Ntm-208;Ntm-204,Ntm;Ntm;Ntm;Ntm;Ntm;Ntm,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,27,32,235106,ENSMUSG00000059974,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9572,cg16435898,0.000161455,0.00000995,16.22020206,2.88E-43,gain,yes,-0.00000571,0.0000169,-0.337388361,0.736052485,neg,ns,0.013899887,0.00495419,2.805683229,0.005338428,pos,ns,2.272586637,0.0000558,0.000170374,0.327758061,0.743315842,pos,ns,0.065784427,Foxg1,Foxg1_Exon,12,49385191,49385240,49385191,49385192,50,-,CGCCACTACGACGACCCGGGCAAGGGCAACTACTGGATGCTGGACCCGTC,"Exon (Foxg1-204/Foxg1, exon 1 of 1)",12,49382883,49386855,3973,1,Foxg1-204,2308,Foxg1-202;Foxg1-203;Foxg1-204;Foxg1-201;Gm43517-201,Foxg1;Foxg1;Foxg1;Foxg1;Gm43517,0;2391;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,27,15228,ENSMUSG00000020950,conserved gene and region,12,49385116,49385808,693,*,693,72,0.670995671,0.980968858,0.103896104,4.68E-56,CpGisland,TRUE,U13,Hc-P
12737,cg10901833,-0.00000154,0.00000314,-0.49005597,0.624440931,loss,ns,0.0000018,0.00000533,0.337363414,0.73607127,pos,ns,0.000200768,0.001562819,0.128465447,0.897863942,pos,ns,0.046789469,-0.0000243,0.0000537,-0.451587595,0.651881878,neg,ns,0.925511181,Ppp2r2a,Ppp2r2a_threeUTR,14,67016486,67016535,67016534,67016535,50,+,TCAACACTTATTTCATCTTTCTTTCGCTTGCCACTTGCACAGACTTTGCG,3' UTR,14,67014056,67072444,58389,2,Ppp2r2a-201,55909,Ppp2r2a-201;Ppp2r2a-204;Ppp2r2a-203;Ppp2r2a-202,Ppp2r2a;Ppp2r2a;Ppp2r2a;Ppp2r2a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,5,71978,ENSMUSG00000022052,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18514,cg24868446,0.0000383,0.00000357,10.72399907,4.97E-23,gain,yes,0.00000204,0.00000606,0.337328856,0.736097292,pos,ns,0.002214937,0.001775923,1.247203519,0.213264302,pos,ns,0.671081835,0.000118603,0.0000611,1.941966993,0.053046733,pos,ns,0.106006252,Hoxb9,Hoxb9_Promoter,11,96271170,96271219,96271170,96271171,50,-,CGCCGGAGCCCTGACGTGATAGCACATTGCATCAGCATAAAACAATCCAT,Promoter (<=1kb),11,96271457,96276595,5139,1,Hoxb9-201,-287,Hoxb9-201;Hoxb9-202,Hoxb9;Hoxb9,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,7,22,15417,ENSMUSG00000020875,mapped to different genes,11,96271037,96271185,149,*,149,13,0.718120805,0.694265233,0.087248322,1.82E-09,CpGisland,TRUE,U13,Hc-P
10504,cg02039091,0.0000212,0.0000119,1.783626221,0.075462588,gain,ns,0.00000681,0.0000202,0.337328484,0.736097573,pos,ns,0.002787081,0.005917262,0.471008611,0.637965853,pos,ns,0.195202566,-0.000058,0.000203494,-0.28496936,0.775857901,neg,ns,0.488432102,Npas3,Npas3_Intron,12,53915951,53916000,53915999,53916000,50,+,AGAGAGAACAATGGCCCAGGAATGTTTAATCTTTCTTATGGCACTAATCG,"Intron (Npas3-204/Npas3, intron 4 of 10)",12,53248157,54069532,821376,1,Npas3-204,667794,Npas3-204;Npas3-201;Npas3-203,Npas3;Npas3;Npas3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,83,103,27386,ENSMUSG00000021010,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21181,cg04355384,0.0000412,0.00000454,9.073004755,1.37E-17,gain,yes,-0.0000026,0.00000771,-0.337319699,0.736104188,neg,ns,0.00729569,0.002257381,3.231926642,0.001361877,pos,ns,2.865862106,-0.000289556,0.0000776,-3.729888306,0.000227748,neg,ns,0.053231286,Mpped2,Mpped2_Exon,2,106650294,106650343,106650342,106650343,50,+,CTTCTCTAGGACCTTTTCTCTGTTTGATTGGAGACCACCCCCTGCCTCCG,"Exon (BB218582-201/BB218582-201, exon 1 of 7)",2,106693269,106868356,175088,1,Mpped2-202,-42926,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,16,33,77015,ENSMUSG00000016386,conserved gene but different region,2,106650342,106650531,190,*,190,11,0.547368421,0.791666667,0.057894737,0.00000285,CpGisland,TRUE,U2,Pr-W
26704,cg25441468,0.000037,0.0000621,0.594728348,0.552458897,gain,ns,-0.0000356,0.000105573,-0.337297952,0.736120563,neg,ns,-0.090668009,0.030929435,-2.931447311,0.003624827,neg,ns,2.440712672,0.003980986,0.001063661,3.742721265,0.000216901,pos,ns,0.79392598,Camta1,Camta1_Intron,4,151549227,151549276,151549275,151549276,50,-,TTACAGCTGGATGGTCTCCCTCTGATGTACTTGAAAACCATTTTCAAGCG,"Intron (Camta1-211/Camta1, intron 4 of 24)",4,150917322,151861669,944348,2,Camta1-211,312393,Camta1-211;Camta1-202;Camta1-201;Camta1-210,Camta1;Camta1;Camta1;Camta1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,22,100072,ENSMUSG00000014592,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5648,cg21695087,-0.000000354,0.00000193,-0.183365545,0.854631081,loss,ns,0.00000111,0.00000328,0.337285298,0.736130092,pos,ns,0.000733967,0.000960218,0.764375613,0.445224867,pos,ns,0.351420587,-0.00003,0.000033,-0.907159504,0.365027065,neg,ns,0.956132243,Fam193a,Fam193a_threeUTR,5,34486362,34486411,34486362,34486363,50,+,CGGAGGCCTGCCTGGCTACTTTTTTAACATATTGTTAAGTAATATTAAAA,3' UTR,5,34369933,34486456,116524,1,Fam193a-202,116429,Fam193a-202;Fam193a-201;Gm26931-201,Fam193a;Fam193a;Gm26931,0;60025;-3840,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,4,231128,ENSMUSG00000037210,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
87,cg22969999,-0.000000142,0.000000232,-0.612365385,0.540744947,loss,ns,0.000000133,0.000000394,0.337266963,0.7361439,pos,ns,0.000253669,0.000115412,2.197941672,0.028692374,pos,ns,1.542233522,-0.00000859,0.00000397,-2.164192927,0.031212839,neg,ns,0.007170218,Plag1,Plag1_fiveUTR,4,3938261,3938310,3938309,3938310,50,+,CGCCCGCGGAATTTCTAATAATTTTTTTCTCATATTTCGGGCTGGACGCG,Promoter (<=1kb),4,3900996,3938382,37387,2,Plag1-201,72,Chchd7-202;Chchd7-206;Chchd7-213;Chchd7-207;Chchd7-208;Chchd7-201;Chchd7-205;Chchd7-214;Chchd7-203;Chchd7-209;Chchd7-210;Chchd7-211;Chchd7-204;Plag1-201;Plag1-202;Plag1-204;Plag1-203,Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Plag1;Plag1;Plag1;Plag1,-578;-578;-580;-604;-604;-604;-604;-604;-610;-733;-1112;-1190;-2544;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,22,56711,ENSMUSG00000003282,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
8217,cg01751985,-0.000000746,0.000000878,-0.849770335,0.396108578,loss,ns,-0.000000502,0.00000149,-0.337051344,0.736306274,neg,ns,-0.001293925,0.000436754,-2.962594,0.003286641,neg,ns,2.483247771,0.0000349,0.000015,2.322217577,0.020868719,pos,ns,0.98673251,Med25,Med25_threeUTR,7,44879432,44879481,44879480,44879481,50,-,GAGGATGTCGTCCTCCATGACGCTGGGCTGCAGGCCCGGCTGGGGGACCG,3' UTR,7,44876765,44892391,15627,2,Med25-210,12910,Med25-210;Med25-201;Med25-211;Med25-205;Med25-204;Med25-209;Med25-214;Med25-212;Med25-207;Med25-202,Med25;Med25;Med25;Med25;Med25;Med25;Med25;Med25;Med25;Med25,0;0;0;0;1827;4658;5229;3703;0;5190,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,3,75613,ENSMUSG00000002968,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10734,cg19950040,-0.0000761,0.0000104,-7.315126573,2.21E-12,loss,yes,-0.00000596,0.0000177,-0.337044124,0.736311711,neg,ns,0.012578472,0.005176426,2.429953126,0.015668227,pos,ns,1.804980152,-0.00045971,0.000178017,-2.582396843,0.010270067,neg,ns,0.723942764,Gm10364,Gm10364_Exon,14,55053861,55053910,55053909,55053910,50,+,GGGAGGCTGGGCAAAGAGCATCTGTTCCCTCCATTCTCCCAGCTCCATCG,"Exon (Zfhx2os-201/Zfhx2os-201, exon 1 of 4)",14,55041772,55042772,1001,1,Gm10364-202,12089,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,100151693,ENSMUSG00000072492,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7563,cg06225294,0.0000603,0.000015,4.024473916,0.0000718,gain,ns,-0.00000858,0.0000255,-0.336981365,0.736358974,neg,ns,0.021287546,0.007456656,2.854838244,0.004596136,pos,ns,2.33760715,-0.000506512,0.000256434,-1.975217536,0.049130299,neg,ns,0.227852473,Zbtb20,Zbtb20_fiveUTR,16,43235857,43235906,43235857,43235858,50,-,CGTGACGCAGTCAGGGACGGATTATTGAATATGCAAGTTAGAAGAAAAAT,Promoter (<=1kb),16,43235880,43609573,373694,1,Zbtb20-215,0,Zbtb20-209;Zbtb20-211;Zbtb20-217;Zbtb20-218;Zbtb20-204;Zbtb20-215;Zbtb20-212,Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,8,98,56490,ENSMUSG00000022708,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
24932,cg03471702,-0.0000012,0.00000416,-0.288338249,0.773280524,loss,ns,0.00000238,0.00000707,0.336979201,0.736360605,pos,ns,0.001989804,0.002071661,0.960487129,0.33755865,pos,ns,0.471650759,-0.0000137,0.0000712,-0.192531356,0.847452075,neg,ns,0.964925996,Spocd1,Spocd1_Intron,4,129962251,129962300,129962251,129962252,50,-,CGAATTAAGAGCAACAGTCGGCATAATACACAACCCGATAAGTGAGCAAT,"Intron (1700003M07Rik-202/1700003M07Rik-202, intron 3 of 3)",4,129947547,129953562,6016,1,Spocd1-202,14753,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,622480,ENSMUSG00000028784,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19173,cg05944164,-0.00000991,0.00000541,-1.830568291,0.068124905,loss,ns,-0.0000031,0.00000919,-0.336793461,0.736500491,neg,ns,-0.00099929,0.002693429,-0.37101026,0.710883301,neg,ns,0.148201687,0.0000282,0.0000926,0.303949035,0.761370632,pos,ns,0.843199389,Thra,Thra_Exon,11,98763537,98763586,98763537,98763538,50,+,CGAAGACCAGATCATCCTCCTGAAGGGGTGCTGCATGGAGATCATGTCCC,"Exon (Thra-201/Thra, exon 8 of 10)",11,98741811,98769006,27196,1,Thra-201,21726,Nr1d1-201;Thra-201;Thra-202;Thra-203,Nr1d1;Thra;Thra;Thra,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,13,18,21833,ENSMUSG00000058756,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18533,cg06602723,0.000110957,0.0000102,10.84583199,1.90E-23,gain,yes,0.00000585,0.0000174,0.336780847,0.736509991,pos,ns,0.016490211,0.00509176,3.238607157,0.001331408,pos,ns,2.875688757,-0.000180409,0.000175105,-1.030290779,0.303676687,neg,ns,0.345214128,Hoxb8,Hoxb8_Promoter,11,96281684,96281733,96281684,96281685,50,+,CGGGGGCGATCGAAGCTGCAGTTTTATAGCTGTAGAGGAAAGAACTCGTA,Promoter (<=1kb),11,96281905,96285315,3411,1,Hoxb8-201,-172,Hoxb7-201;Hoxb8-201;Hoxb8-202;Hoxb8-203,Hoxb7;Hoxb8;Hoxb8;Hoxb8,0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,6,26,15416,ENSMUSG00000056648,mapped to different genes,11,96281580,96281823,244,*,244,15,0.471311475,1.107748184,0.06147541,1.03E-08,CpGisland,TRUE,U13,Hc-P
10418,cg01908395,-0.00000134,0.00000853,-0.157393956,0.875036842,loss,ns,-0.00000488,0.0000145,-0.336698847,0.736571751,neg,ns,0.002285668,0.004247429,0.538129758,0.590873612,pos,ns,0.228505405,-0.0000135,0.000146069,-0.092653493,0.926238693,neg,ns,0.406204879,Msx2,Msx2_Promoter,13,53476271,53476320,53476271,53476272,50,-,CGCCCTAATGGGACAAGCTCGCTCCCAGAGGAGTGACAATTCCTCCTAAT,Promoter (3-4kb),13,53466884,53473074,6191,2,Msx2-201,-3246,Msx2-201;Msx2-202,Msx2;Msx2,0;-3197,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,4,17702,ENSMUSG00000021469,conserved gene and region,13,53476051,53476446,396,*,396,39,0.676767677,0.860294118,0.098484849,1.19E-29,CpGisland,TRUE,U3,Pr-B
24027,cg14183813,-0.00000228,0.00000135,-1.69344457,0.091375396,loss,ns,0.00000077,0.00000229,0.336664198,0.736597848,pos,ns,-0.000550072,0.000670278,-0.820662275,0.41246927,neg,ns,0.384608401,-0.00000615,0.0000231,-0.266612957,0.789944434,neg,ns,0.964435932,Ctdspl2,Ctdspl2_threeUTR,2,122011979,122012028,122011979,122011980,50,-,CGGCACTTTTTCTAAAGAGAAGTTTGATATTTTGTATGCTTGTTAAGAAA,3' UTR,2,121956001,122013642,57642,1,Ctdspl2-201,55978,Ctdspl2-201;Ctdspl2-204;Ctdspl2-209;Ctdspl2-203;Ctdspl2-202,Ctdspl2;Ctdspl2;Ctdspl2;Ctdspl2;Ctdspl2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,8,329506,ENSMUSG00000033411,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17433,cg18296617,-0.000000767,0.000000915,-0.838382965,0.40246162,loss,ns,0.000000523,0.00000155,0.336555651,0.736679606,pos,ns,0.000536511,0.000455327,1.178299506,0.23958091,pos,ns,0.620547789,-0.0000122,0.0000157,-0.776468089,0.438064683,neg,ns,0.974075749,Crtc2,Crtc2_Exon,3,90261028,90261077,90261028,90261029,50,+,CGCCAGAAGGTCCCAACAGCAGCTGCCCAAACAGTTTTCGCCAACAATGT,"Exon (Crtc2-201/Crtc2, exon 11 of 14)",3,90254163,90264125,9963,1,Crtc2-201,6865,Crtc2-201;Crtc2-203;Crtc2-206;Crtc2-202;Crtc2-205;Crtc2-208;Crtc2-204;Crtc2-207;Dennd4b-202,Crtc2;Crtc2;Crtc2;Crtc2;Crtc2;Crtc2;Crtc2;Crtc2;Dennd4b,0;0;0;6704;0;0;2977;2063;-4108,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,5,74343,ENSMUSG00000027936,conserved gene but different region,3,90260975,90261067,93,*,93,8,0.688172043,0.775,0.086021505,0.00000681,CpGisland,TRUE,U10,Tr-S
11206,cg01651170,0.0000264,0.00000446,5.928697291,8.14E-09,gain,yes,-0.00000255,0.00000758,-0.336532961,0.736696696,neg,ns,0.006583833,0.002219938,2.965773584,0.003253794,pos,ns,2.487609942,-0.000195097,0.0000763,-2.5555107,0.011080259,neg,ns,0.040327279,Satb2,Satb2_fiveUTR,1,56971994,56972043,56972042,56972043,50,-,GGGGAGGGGGGCCCCGCCTGGCAGGAAATTAAACATCAATCAATCAATCG,Promoter (<=1kb),1,56793981,56972502,178522,2,Satb2-201,459,Satb2-201;Satb2-202;Satb2-205;Satb2-203;Satb2-204,Satb2;Satb2;Satb2;Satb2;Satb2,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,9,33,212712,ENSMUSG00000038331,mapped to different genes,1,56971892,56972098,207,*,207,12,0.657004831,0.621155289,0.057971015,0.00000084,CpGisland,TRUE,U3,Pr-B
10199,cg16447012,0.000029,0.00000304,9.539509644,4.43E-19,gain,yes,-0.00000174,0.00000516,-0.336512262,0.736712287,neg,ns,0.00352809,0.001510654,2.335471049,0.020156442,pos,ns,1.695586126,0.0000535,0.000052,1.029893532,0.303862848,pos,ns,0.092451094,Hoxa9,Hoxa9_Exon,6,52230113,52230162,52230113,52230114,50,+,CGAGAGAAAGGTGGATCCCAACAACAGGAAACTACCTAAATCACCGACCA,Promoter (<=1kb),6,52223963,52231089,7127,2,Hoxa9-203,927,Hoxa10-202;Hoxa10-203;Hoxa10-201;Hoxa10-204;Hoxa9-201;Hoxa9-203;Hoxa9-202;Hoxa9-204;Hoxa9-205,Hoxa10;Hoxa10;Hoxa10;Hoxa10;Hoxa9;Hoxa9;Hoxa9;Hoxa9;Hoxa9,0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,14,15405,ENSMUSG00000038227,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
26407,cg23819016,0.0000167,0.00000294,5.654380378,3.55E-08,gain,yes,-0.00000168,0.000005,-0.336408759,0.73679025,neg,ns,0.006843286,0.001465697,4.668961911,0.00000451,pos,ns,5.345427448,-0.000181802,0.0000504,-3.606817367,0.000361166,neg,ns,0.059505544,Gsx1,Gsx1_Intergenic_downstream,5,147223881,147223930,147223881,147223882,50,+,CGGGGGAACTGTCAGAAACATTTACGCTAGAATATCTTGAAATTGCAAAT,Distal Intergenic,5,147188696,147190947,2252,1,Gsx1-201,35185,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,12,20,14842,ENSMUSG00000053129,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
6441,cg18834712,0.00000617,0.00000428,1.440530735,0.150726502,gain,ns,-0.00000245,0.00000727,-0.336327658,0.73685134,neg,ns,-0.000339111,0.00213104,-0.159129185,0.873670717,neg,ns,0.05865222,0.0000295,0.0000733,0.402288583,0.687748898,pos,ns,0.074772896,Tenm2,Tenm2_Promoter,11,37236220,37236269,37236220,37236221,50,-,CGAGCCACCCAGGACCAATGTGCAACCTGCTCTGGAATCAAACCCATAAC,Promoter (<=1kb),11,36944205,37235964,291760,2,Tenm2-207,-305,Tenm2-202;Tenm2-207,Tenm2;Tenm2,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,6,84,23964,ENSMUSG00000049336,mapped to different genes,11,37236045,37236221,177,*,177,17,0.672316384,0.854829546,0.096045198,5.62E-13,CpGisland,TRUE,U3,Pr-B
8460,cg18864227,-0.0000116,0.00000865,-1.346794173,0.179030295,loss,ns,-0.00000494,0.0000147,-0.336301551,0.736871006,neg,ns,-0.009274464,0.004303279,-2.15520879,0.031915153,neg,ns,1.496003068,0.000225373,0.000147989,1.522898753,0.128803454,pos,ns,0.320567677,Zeb2,Zeb2_Intergenic_upstream,2,45185320,45185369,45185368,45185369,50,-,TCTCTGTTTCCTTTCTGCCAGTACCTAATATCAGCTATGCCCAGGAGCCG,Distal Intergenic,2,44983632,45117395,133764,2,Zeb2-212,-67974,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,9,158,24136,ENSMUSG00000026872,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16624,cg09818755,0.00000379,0.00000465,0.814736953,0.41584835,gain,ns,0.00000266,0.0000079,0.33624319,0.736914968,pos,ns,0.009322224,0.002315447,4.02610116,0.0000714,pos,ns,4.146573589,-0.000211544,0.0000796,-2.656654131,0.00830061,neg,ns,0.075749573,Six3,Six3_Intergenic_downstream,17,85646140,85646189,85646140,85646141,50,-,CGAGAAAGGCAAATGATGTTGAAACATTGAACTATATTTCCATCTGTTCA,Distal Intergenic,17,85621031,85629302,8272,1,Six3-201,25158,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,24,20473,ENSMUSG00000038805,mapped to different genes,17,85645846,85646141,296,*,296,22,0.58445946,0.872688287,0.074324324,3.15E-14,CpGisland,TRUE,U13,Hc-P
27107,cg12428624,0.0000157,0.0000101,1.54648725,0.123007163,gain,ns,0.00000579,0.0000172,0.336176911,0.736964897,pos,ns,0.006276454,0.005043155,1.244549225,0.214237581,pos,ns,0.669104343,-0.000201799,0.000173434,-1.16355294,0.245500024,neg,ns,0.586900478,Lrrc7,Lrrc7_Exon,3,158175231,158175280,158175279,158175280,50,-,GCATATCTTGGATCTGCTGATCACACCTGGCCCATGGTGTGCAGCAATCG,"Exon (Lrrc7-206/Lrrc7, exon 15 of 25)",3,158082891,158353433,270543,2,Lrrc7-206,178153,Lrrc7-206;Lrrc7-205;Lrrc7-204;Lrrc7-207;Lrrc7-201,Lrrc7;Lrrc7;Lrrc7;Lrrc7;Lrrc7,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,10,242274,ENSMUSG00000028176,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12647,cg04146048,0.000000624,0.00000209,0.298155543,0.765784187,gain,ns,-0.00000119,0.00000355,-0.336128277,0.737001533,neg,ns,0.000764414,0.001041392,0.734031083,0.4634846,pos,ns,0.333964692,-0.0000742,0.0000358,-2.072185743,0.039074584,neg,ns,0.954753437,Herc1,Herc1_Exon,9,66388775,66388824,66388775,66388776,50,+,CGTAACATTCCAACATTAGTAAAAGACATCAGCAATGTAGGAGAGGTTTC,"Exon (Herc1-201/Herc1, exon 7 of 78)",9,66350526,66508775,158250,1,Herc1-201,38249,Herc1-201,Herc1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,15,15,235439,ENSMUSG00000038664,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21841,cg03940893,-0.00000255,0.0000027,-0.943949794,0.345930402,loss,ns,-0.00000154,0.00000459,-0.336113943,0.737012331,neg,ns,-0.00126829,0.001345417,-0.9426741,0.346581678,neg,ns,0.4601944,-0.0000003,0.0000463,-0.006476103,0.994837019,neg,ns,0.950286201,Gm1943,Gm1943_Intron,8,109249239,109249288,109249287,109249288,50,+,ATAAAACCATTCTACTGTATGATGATTAAACACTGGAGACATTAACAGCG,"Intron (D030068K23Rik-202/D030068K23Rik-202, intron 8 of 9)",8,109340691,109340864,174,2,Gm1943-201,91576,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,28,384864,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11362,cg18730034,-0.0000233,0.000011,-2.121271506,0.034692297,loss,ns,0.00000627,0.0000187,0.336080724,0.737037356,pos,ns,-0.010056035,0.005465913,-1.839772255,0.066757659,neg,ns,1.175498902,0.000084,0.000187972,0.446679412,0.65541843,pos,ns,0.685706219,Gabrb3,Gabrb3_Exon,7,57765474,57765523,57765474,57765475,50,+,CGCCTATTCTGGGATCCCTCTCAACCTCACGCTTGACAATCGAGTGGCTG,"Exon (Gabrb3-202/Gabrb3, exon 5 of 10)",7,57419692,57828798,409107,1,Gabrb3-202,345782,Gabrb3-202;Gabrb3-206;Gabrb3-201;Gabrb3-205;Gabrb3-204,Gabrb3;Gabrb3;Gabrb3;Gabrb3;Gabrb3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,14402,ENSMUSG00000033676,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2008,cg19537999,-0.00000575,0.00000152,-3.782611591,0.000186214,loss,ns,0.000000868,0.00000258,0.336048368,0.737061732,pos,ns,0.000130156,0.00075637,0.172079873,0.863487018,pos,ns,0.063744187,-0.0000179,0.000026,-0.689678721,0.490912191,neg,ns,0.967794871,Prune2,Prune2_Exon,19,17060278,17060327,17060278,17060279,50,+,CGATGTAAATGAAACATTCATTATCCATCATGCTGAGAAGTTGATGAACT,"Exon (Gm27796-201/Gm27796-201, exon 1 of 1)",19,16956118,17223932,267815,1,Prune2-201,104160,Prune2-205;Prune2-201,Prune2;Prune2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,8,353211,ENSMUSG00000039126,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27845,cg04274098,-0.0000248,0.00000515,-4.816580016,0.00000229,loss,ns,-0.00000294,0.00000874,-0.335789972,0.737256401,neg,ns,-0.003204302,0.002561864,-1.250769995,0.211961597,neg,ns,0.673742818,0.0000023,0.0000881,0.026143909,0.979159376,pos,ns,0.966377595,Esrrg,Esrrg_Intron,1,188199960,188200009,188199960,188199961,50,-,CGTGACTGTTTTTAGAAATAATTTTTAATTGATTTTGTAATTAACAGTTC,"Intron (Esrrg-203/Esrrg, intron 7 of 7)",1,187609029,188214386,605358,1,Esrrg-203,590931,Esrrg-203;Esrrg-201;Esrrg-202,Esrrg;Esrrg;Esrrg,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,60,26381,ENSMUSG00000026610,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23142,cg09668387,0.0000586,0.0000103,5.696571463,2.84E-08,gain,yes,0.00000587,0.0000175,0.33572453,0.737305706,pos,ns,0.016207538,0.005122082,3.164247919,0.001709123,pos,ns,2.767226578,-0.000281046,0.000176148,-1.595509849,0.11161719,neg,ns,0.512690754,Rnf220,Rnf220_Intron,4,117322295,117322344,117322343,117322344,50,+,CCTAAATCAGGAACCAAGATGGGCTATTGTCACTTACCGCATTAGCCTCG,"Intron (Rnf220-201/Rnf220, intron 2 of 14)",4,117271463,117497052,225590,2,Rnf220-201,174708,Rnf220-201;Rnf220-202;Rnf220-207,Rnf220;Rnf220;Rnf220,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18715,cg20651417,-0.000138443,0.0000167,-8.284141972,3.62E-15,loss,yes,0.00000953,0.0000284,0.335655185,0.737357953,pos,ns,0.044039086,0.008317619,5.294674803,0.000000226,pos,ns,6.645392091,-0.001939002,0.000286042,-6.778727566,6.12E-11,neg,yes,0.495625367,Nfe2l1,Nfe2l1_Exon,11,96827541,96827590,96827589,96827590,50,-,TGGAACTGGGTCTGAGTATAGGCAGAACTGGGCCCCAGGATGATCTCCCG,"Exon (Nfe2l1-211/Nfe2l1, exon 2 of 5)",11,96817414,96829502,12089,2,Nfe2l1-211,1912,Nfe2l1-210;Nfe2l1-212;Nfe2l1-211;Nfe2l1-201;Nfe2l1-203;Nfe2l1-204;Nfe2l1-202;Nfe2l1-205;Nfe2l1-209;Nfe2l1-206;Nfe2l1-208;Nfe2l1-207,Nfe2l1;Nfe2l1;Nfe2l1;Nfe2l1;Nfe2l1;Nfe2l1;Nfe2l1;Nfe2l1;Nfe2l1;Nfe2l1;Nfe2l1;Nfe2l1,0;0;0;0;0;0;0;0;0;-4816;0;1911,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,4,18023,ENSMUSG00000038615,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27629,cg12191257,0.0000169,0.00000419,4.034761968,0.0000689,gain,ns,0.00000239,0.00000711,0.3355171,0.737461994,pos,ns,0.006679154,0.002084,3.20496775,0.001491516,pos,ns,2.826372119,-0.000195572,0.0000717,-2.7288427,0.006718538,neg,ns,0.096325682,Aim2,Aim2_Intron,1,173390269,173390318,173390269,173390270,50,+,CGGTGATGCAGAAGGTATGTGCTTTTTCAGTTCTGGTGCTGATGCTGTGT,"Intron (Aim2-202/Aim2, intron 1 of 11)",1,173350879,173466040,115162,1,Aim2-202,39390,Aim2-202,Aim2,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,7,383619,ENSMUSG00000037860,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13700,cg26156864,-0.0000151,0.0000122,-1.236606489,0.217169252,loss,ns,-0.00000698,0.0000208,-0.335362994,0.737578113,neg,ns,0.011409307,0.006095783,1.871672107,0.062193549,pos,ns,1.206254661,-0.0000991,0.000209633,-0.472493074,0.636907343,neg,ns,0.76590656,Tle1,Tle1_Exon,4,72169117,72169166,72169165,72169166,50,+,CGTACCCCGATGATGGCATTCAATTCTGCCATGGTCACCTGTTTGGCACG,"Exon (Tle1-203/Tle1, exon 6 of 20)",4,72117142,72200919,83778,2,Tle1-203,31753,Tle1-203;Tle1-202;Tle1-204;Tle1-207;Tle1-201;Tle1-205;Tle1-209;Tle1-208,Tle1;Tle1;Tle1;Tle1;Tle1;Tle1;Tle1;Tle1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,20,21885,ENSMUSG00000008305,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6435,cg00160892,0.0000455,0.00000705,6.447346091,4.36E-10,gain,yes,0.00000402,0.000012,0.335137881,0.737747746,pos,ns,0.007505299,0.003510651,2.137865312,0.033309504,pos,ns,1.477431837,-0.000111231,0.000120731,-0.921311289,0.357604352,neg,ns,0.11758696,Grhl2,Grhl2_fiveUTR,15,37233375,37233424,37233423,37233424,50,-,ATTGGATCAAACATGTCACAAGAGTCGGACAAGTAAGTGGATCACACGCG,Promoter (<=1kb),15,37233036,37333647,100612,1,Grhl2-203,339,Grhl2-203;Grhl2-201;Grhl2-204,Grhl2;Grhl2;Grhl2,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,6,8,252973,ENSMUSG00000022286,conserved gene and region,15,37233368,37233440,73,*,73,9,0.602739726,1.383157895,0.123287671,5.59E-08,CpGisland,TRUE,NA,NRS
18580,cg26456205,-0.0000102,0.00000699,-1.456473711,0.146273786,loss,ns,0.00000398,0.0000119,0.335123429,0.737758637,pos,ns,-0.009918545,0.003477018,-2.852600854,0.004627769,neg,ns,2.334628318,0.000251386,0.000119574,2.102342363,0.036329578,pos,ns,0.099443877,Hoxb5,Hoxb5_Exon,11,96303344,96303393,96303344,96303345,50,+,CGGCCCTAACGATTCTCGGATCGTCATTATTTGTAACCATAGAGCATGAA,Promoter (<=1kb),11,96303336,96306121,2786,1,Hoxb5-202,8,Hoxb5-202;Hoxb5-201;Hoxb6-202;Hoxb6-201,Hoxb5;Hoxb5;Hoxb6;Hoxb6,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,22,34,15413,ENSMUSG00000038700,conserved gene but different region,11,96303326,96303366,41,*,41,6,0.585365854,1.72027972,0.146341463,0.00000875,CpGisland,TRUE,U3,Pr-B
22569,cg00867443,-0.0000345,0.00000738,-4.672575134,0.00000444,loss,ns,0.0000042,0.0000125,0.335057557,0.737808277,pos,ns,-0.004537982,0.003671875,-1.235876117,0.217440282,neg,ns,0.662659997,-0.00000212,0.000126275,-0.016807359,0.986601111,neg,ns,0.861086599,Rpl19-ps10,Rpl19-ps10_Intergenic_downstream,7,115218163,115218212,115218211,115218212,50,+,AATAATACACTATCCTGTCTAATTAATAAAATCTGTTGTTTCCAAGCACG,Distal Intergenic,7,115172056,115172385,330,1,Rpl19-ps10-201,46107,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,29,668472,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23682,cg27146044,-0.00000517,0.00000175,-2.953291351,0.003384492,loss,ns,-0.000000996,0.00000297,-0.335011489,0.737842994,neg,ns,0.001035461,0.00087057,1.189406836,0.235189813,pos,ns,0.628581494,-0.0000506,0.0000299,-1.691545357,0.091737636,neg,ns,0.961644563,Zfp131,Zfp131_threeUTR,13,119776018,119776067,119776018,119776019,50,+,CGGTTACATTTCTCACAATGGAACAAGTCCTTCACATGTGACAGCTGAAG,3' UTR,13,119765187,119790805,25619,2,Zfp131-201,14738,Zfp131-201;Zfp131-202;Zfp131-203;Zfp131-206;Zfp131-204;Zfp131-207;Zfp131-209;Zfp131-208,Zfp131;Zfp131;Zfp131;Zfp131;Zfp131;Zfp131;Zfp131;Zfp131,0;0;0;0;0;0;0;2153,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,3,72465,ENSMUSG00000094870,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11186,cg05243338,-0.000000526,0.00000225,-0.233671195,0.815394483,loss,ns,0.00000128,0.00000382,0.334985425,0.737862636,pos,ns,0.003221842,0.001120131,2.876307297,0.004302449,pos,ns,2.366284265,-0.000115758,0.0000385,-3.005056468,0.002872043,neg,ns,0.943054816,Satb2,Satb2_Exon,1,56897968,56898017,56898016,56898017,50,+,GCTAATGTGCTCTGGTTCATCTCTTTGAGCAGTTCCTTTAAGGCATTGCG,"Exon (Satb2-201/Satb2, exon 4 of 10)",1,56793981,56972502,178522,2,Satb2-201,74485,Satb2-201;Satb2-202;Satb2-205,Satb2;Satb2;Satb2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,33,212712,ENSMUSG00000038331,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8964,cg03848010,0.00000592,0.00000503,1.176650988,0.240237543,gain,ns,0.00000286,0.00000854,0.334957384,0.737883768,pos,ns,-0.002285912,0.002502735,-0.91336553,0.361760131,neg,ns,0.441579297,0.00013937,0.0000861,1.619280061,0.106403869,pos,ns,0.925924516,Kcnc1,Kcnc1_threeUTR,7,46437294,46437343,46437342,46437343,50,+,CATTGCTAAGTATATGCCGACAGAGGCTGTGAGAGTGACTTGACCAGGCG,3' UTR,7,46397648,46438704,41057,1,Kcnc1-203,39646,Kcnc1-201;Kcnc1-203,Kcnc1;Kcnc1,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,14,16502,ENSMUSG00000058975,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23594,cg23739143,0.0000244,0.00000798,3.054509925,0.002449943,gain,ns,-0.00000454,0.0000136,-0.334884271,0.737938868,neg,ns,-0.006208304,0.003973883,-1.562276273,0.119243164,neg,ns,0.923566509,-0.00000981,0.000136662,-0.071783776,0.942820274,neg,ns,0.632465818,Gm3508,Gm3508_Intergenic_downstream,1,119238548,119238597,119238548,119238549,50,-,CGGACAGGGATTTCACACCCAGGAAAATAATTTCCTGGTAAGGAGATTAG,Distal Intergenic,1,119241962,119242753,792,2,Gm3508-201,4205,Gm3508-201,Gm3508,4156,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,8,100041778,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7866,cg00227334,-0.0000214,0.00000614,-3.491086477,0.000550891,loss,ns,-0.00000349,0.0000104,-0.334628079,0.738131953,neg,ns,-0.006457397,0.003056989,-2.112338789,0.035456871,neg,ns,1.45029959,0.000105611,0.00010513,1.004578045,0.315883555,pos,ns,0.855757613,Hif1an,Hif1an_threeUTR,19,44574039,44574088,44574039,44574040,50,-,CGTCTGCTCTCATTTGCGTAATGGTTTCTGTCACTGGTGATTAGACACAG,3' UTR,19,44562850,44576274,13425,1,Hif1an-201,11189,Hif1an-201,Hif1an,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,31,319594,ENSMUSG00000036450,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26350,cg15335837,-0.00000407,0.00000179,-2.276534637,0.023495504,loss,ns,-0.00000102,0.00000304,-0.334447729,0.738267887,neg,ns,-0.000865465,0.000889269,-0.97323236,0.331196617,neg,ns,0.479914107,0.0000417,0.0000306,1.364691963,0.173339619,pos,ns,0.952589074,Kiz,Kiz_Exon,2,146889051,146889100,146889099,146889100,50,+,ACAGCCATGTCAAGAGGATTGTATCAACCAGCAACAATCTTTATGGGCCG,"Exon (Kiz-201/Kiz, exon 5 of 14)",2,146855864,146970097,114234,1,Kiz-201,33187,Kiz-201;Kiz-203,Kiz;Kiz,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,29,228730,ENSMUSG00000074749,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21846,cg23499850,0.00000568,0.0000051,1.113678711,0.266279797,gain,ns,-0.0000029,0.00000866,-0.334384797,0.738315323,neg,ns,0.002821125,0.00253796,1.11157178,0.267183646,pos,ns,0.573190128,-0.000221926,0.0000873,-2.542684554,0.011486497,neg,ns,0.824588823,Gm1943,Gm1943_Exon,8,109251384,109251433,109251384,109251385,50,-,CGCTCCTGGGGGTCTGGATAATCTCCCTTGGCTTTACCGCACTGTCTGGC,"Exon (D030068K23Rik-202/D030068K23Rik-202, exon 10 of 10)",8,109340691,109340864,174,2,Gm1943-201,89480,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,28,384864,NA,mapped to different genes,8,109251360,109251796,437,*,437,24,0.544622426,0.749571184,0.054919909,1.62E-12,CpGisland,TRUE,U15,NS
20479,cg16616747,0.0000293,0.00000415,7.073293158,1.01E-11,gain,yes,-0.00000235,0.00000704,-0.334039117,0.7385759,neg,ns,0.004349695,0.002063694,2.107722399,0.035857631,pos,ns,1.4454184,-0.0000874,0.000071,-1.231089676,0.219222507,neg,ns,0.076925069,Hoxc4,Hoxc4_Intergenic_downstream,15,103061733,103061782,103061733,103061734,50,-,CGGCTTTCGCTGCTGTTGAAGGTTAAAAGATGGTCTTCGCTTGACAAGTG,Distal Intergenic,15,103034395,103036852,2458,1,Hoxc4-201,27387,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,32,91,15423,ENSMUSG00000075394,mapped to different genes,15,103061537,103061809,273,*,273,19,0.586080586,0.8125,0.06959707,7.69E-12,CpGisland,TRUE,U13,Hc-P
5559,cg03315583,-0.000000858,0.00000158,-0.543719507,0.587025305,loss,ns,0.000000896,0.00000268,0.333969926,0.73862806,pos,ns,0.001707651,0.00078576,2.173246545,0.030518616,pos,ns,1.515435167,-0.0000159,0.000027,-0.589628906,0.555868952,neg,ns,0.965420124,Pbx3,Pbx3_Intron,2,34256259,34256308,34256307,34256308,50,+,ACTGTAATTAAGGATTAATTGCCATTAATTATTCACACATAAGCTCATCG,"Intron (Pbx3-202/Pbx3, intron 2 of 7)",2,34171457,34372038,200582,2,Pbx3-202,115730,Pbx3-202;Pbx3-201;Pbx3-210;Pbx3-206;Pbx3-207;Pbx3-209;Pbx3-204;Pbx3-205;Pbx3-203,Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,82,18516,ENSMUSG00000038718,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9745,cg22274327,-0.0000398,0.00000777,-5.118050653,0.000000543,loss,yes,0.00000441,0.0000132,0.33396051,0.738635158,pos,ns,-0.007097816,0.003868676,-1.834688635,0.067509995,neg,ns,1.170631925,0.0000578,0.000133043,0.434177336,0.664461699,pos,ns,0.91188423,Adamts2,Adamts2_Promoter,11,50593228,50593277,50593276,50593277,50,+,GTCATTCGATTTCCTCTATCTCATTTTCAGAAATGCAATTAGGGAGGCCG,Promoter (8-9kb),11,50602084,50798346,196263,1,Adamts2-204,-8807,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,2,216725,ENSMUSG00000036545,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14451,cg21560468,-0.000000616,0.000000338,-1.820150885,0.069700237,loss,ns,-0.000000192,0.000000575,-0.333924223,0.738662514,neg,ns,0.0000679,0.000168382,0.402956593,0.687257913,pos,ns,0.162880251,-0.0000143,0.00000579,-2.475586382,0.013835824,neg,ns,0.007712691,Ywhae,Ywhae_fiveUTR,11,75732858,75732907,75732906,75732907,50,-,GCCAGGGAGCGGTTGCCATAGAGCTGAGCAGTTGTCCGCGTGCGCAGGCG,Promoter (<=1kb),11,75732869,75765845,32977,1,Ywhae-201,0,Ywhae-201;Ywhae-203;Ywhae-204;Ywhae-202,Ywhae;Ywhae;Ywhae;Ywhae,0;0;0;-241,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,9,9,22627,ENSMUSG00000020849,conserved gene but different region,11,75732561,75733672,1112,*,1112,119,0.701438849,0.881745794,0.107014389,6.96E-94,CpGisland,TRUE,NA,NRS
10561,cg13985028,-0.00000836,0.0000052,-1.607635319,0.108933053,loss,ns,0.00000295,0.00000884,0.333860868,0.738710277,pos,ns,0.003170509,0.002589007,1.224604474,0.221654043,pos,ns,0.654324343,-0.000134174,0.000089,-1.506965781,0.132837765,neg,ns,0.87747849,Gm12469,Gm12469_Intergenic_upstream,4,54354551,54354600,54354599,54354600,50,+,GCTTTAATTATGGATGGGTGGGCCCGGCTGTGTTTTGGGTTCAGCAAACG,Distal Intergenic,4,54235670,54235876,207,2,Gm12469-201,-118675,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,9,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
826,cg22605660,-0.00000144,0.00000083,-1.729324003,0.084746595,loss,ns,-0.000000471,0.00000141,-0.333853335,0.738715956,neg,ns,0.000384953,0.000413242,0.931545193,0.35229652,pos,ns,0.453091647,-0.000000812,0.0000142,-0.05710924,0.954494968,neg,ns,0.973517983,1810013L24Rik,1810013L24Rik_Exon,16,8855778,8855827,8855826,8855827,50,+,TTTTTCTTCTTCCTAGGTCTTAGTGGTGCAATGGCTAGTATAAGCGTGCG,"Exon (1810013L24Rik-201/1810013L24Rik, exon 4 of 4)",16,8830100,8858922,28823,1,1810013L24Rik-201,25678,1810013L24Rik-201,1810013L24Rik,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,18,19,69053,ENSMUSG00000022507,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
596,cg10326849,-0.00000306,0.00000451,-0.679053257,0.497610778,loss,ns,0.00000256,0.00000766,0.333690744,0.738838537,pos,ns,-0.001526246,0.002245462,-0.67970223,0.49720025,neg,ns,0.303468662,0.000000551,0.0000772,0.007133291,0.994313093,pos,ns,0.566507357,Celf2,Celf2_Intron,2,7147246,7147295,7147246,7147247,50,-,CGACATGTTCTATAATGATAATTTCATTGATTTAGAAAGTGACATTATGA,"Intron (Celf2-201/Celf2, intron 2 of 15)",2,6539694,7396000,856307,2,Celf2-201,248705,Celf2-201;Celf2-217;Celf2-209,Celf2;Celf2;Celf2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,24,14007,ENSMUSG00000002107,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19482,cg03448317,-0.00000754,0.00000468,-1.609766184,0.1084667,loss,ns,-0.00000265,0.00000796,-0.333575133,0.738925702,neg,ns,0.0002773,0.002331701,0.118925861,0.905411121,pos,ns,0.043154176,0.000051,0.0000802,0.63617417,0.525132316,pos,ns,0.918986853,Pja1,Pja1_Intergenic_downstream,X,99403601,99403650,99403649,99403650,50,-,GCCTTCAGACAGAGCAGGAATGCAGGCTGTAATTAGAATCGCTTCAACCG,Distal Intergenic,20,99466146,99470672,4527,2,Pja1-204,67071,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,17,18744,ENSMUSG00000034403,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5837,cg11688790,-0.0000565,0.00000758,-7.452954641,9.17E-13,loss,yes,-0.0000043,0.0000129,-0.333543669,0.738949425,neg,ns,-0.009407104,0.003774612,-2.492204497,0.013217332,neg,ns,1.878856185,0.000333638,0.000129809,2.570233461,0.010629799,pos,ns,0.818466895,Mylk,Mylk_Intron,16,34923204,34923253,34923204,34923205,50,-,CGCTTCCTAATTTGGATGAGACTTTTGTTTGCTGGTATTTCACATTCTTG,"Intron (Mylk-201/Mylk, intron 16 of 31)",16,34784921,35002420,217500,1,Mylk-201,138283,Mylk-201;Mylk-207,Mylk;Mylk,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,7,107589,ENSMUSG00000022836,conserved gene and region,16,34923067,34923205,139,*,139,10,0.625899281,0.735449735,0.071942446,0.00000141,CpGisland,TRUE,NA,NRS
14761,cg26578105,0.00000995,0.00000726,1.369843709,0.171727049,gain,ns,-0.00000412,0.0000123,-0.333470242,0.739004788,neg,ns,0.007534425,0.003615756,2.083775898,0.03799933,pos,ns,1.420224056,-0.000353636,0.000124346,-2.84398,0.004751516,neg,ns,0.162798691,Rnf165,Rnf165_Exon,18,77563419,77563468,77563419,77563420,50,-,CGCACACAGCAGCGAGTTGACCATTCACTGAGCTACACAATGAAGAAAAA,"Exon (Rnf165-205/Rnf165, exon 1 of 1)",18,77456110,77565136,109027,2,Rnf165-201,1668,Rnf165-201;Rnf165-202;Rnf165-204;Rnf165-205;Rnf165-203,Rnf165;Rnf165;Rnf165;Rnf165;Rnf165,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,21,225743,ENSMUSG00000025427,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
23253,cg06965767,-0.0000328,0.0000104,-3.146180683,0.001814774,loss,ns,-0.0000059,0.0000177,-0.333401776,0.739056411,neg,ns,0.010121167,0.005188635,1.950641596,0.052000531,pos,ns,1.283992217,-0.000272074,0.000178437,-1.524764016,0.128337482,neg,ns,0.893480744,Eri3,Eri3_Intron,4,117613557,117613606,117613557,117613558,50,-,CGGTGCATAAAATTTCATTGGGCAACAATAATAAGCATGACCAGATGATG,"Intron (Eri3-201/Eri3, intron 6 of 8)",4,117550365,117674297,123933,1,Eri3-201,63192,Eri3-201;Eri3-206;Eri3-202;Eri3-204,Eri3;Eri3;Eri3;Eri3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,82,97,140546,ENSMUSG00000033423,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13529,cg03076661,0.00000674,0.00000569,1.184970811,0.236936606,gain,ns,0.00000322,0.00000966,0.333391617,0.739064072,pos,ns,0.000768281,0.002830171,0.27146087,0.786217274,pos,ns,0.104457418,-0.000143328,0.0000973,-1.472610419,0.141870658,neg,ns,0.678535337,Adamts16,Adamts16_Intergenic_upstream,13,71165737,71165786,71165785,71165786,50,-,TTCGACAGACAACAAACGGCCCCGTGCATGTCAAAATAGGTGGTGATGCG,Distal Intergenic,13,70727802,70841811,114010,2,Adamts16-201,-323975,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,7,271127,ENSMUSG00000049538,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5777,cg11977715,-0.000037,0.00000785,-4.713523709,0.00000368,loss,ns,-0.00000445,0.0000133,-0.333188366,0.739217331,neg,ns,-0.004523637,0.003909336,-1.157136969,0.248107243,neg,ns,0.605360558,-0.000129123,0.000134442,-0.960441782,0.337581426,neg,ns,0.832032436,Gm18252,Gm18252_Intergenic_upstream,10,34702188,34702237,34702188,34702189,50,+,CGTCTCTAGAGTGCCCATGTAAGTGATTTTACATTAGCTCATCCACTTTT,Distal Intergenic,10,34878624,34957537,78914,1,Gm18252-201,-176387,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,2,100416790,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10032,cg05441409,0.00000106,0.00000615,0.172678186,0.863017075,gain,ns,0.00000348,0.0000104,0.333173392,0.739228622,pos,ns,-0.000714031,0.003059428,-0.233387194,0.815614791,neg,ns,0.088514907,-0.000179323,0.000105213,-1.704374455,0.089313124,neg,ns,0.692167428,Gpc4,Gpc4_Exon,X,52056724,52056773,52056724,52056725,50,-,CGAGCACTGAAGGCACTTTCAGAGATGGAACGAGAAATTCGTCCAGCTGG,"Exon (Gpc4-201/Gpc4, exon 6 of 9)",20,52053021,52165252,112232,2,Gpc4-201,108479,Gpc4-201,Gpc4,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,14735,ENSMUSG00000031119,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2889,cg25814004,0.00000571,0.00000449,1.271916759,0.204356022,gain,ns,-0.00000254,0.00000762,-0.333104315,0.739280712,neg,ns,0.003310637,0.002233501,1.482263708,0.139285953,pos,ns,0.856092681,-0.000206908,0.0000768,-2.693770936,0.007449572,neg,ns,0.889627527,Elavl3,Elavl3_Exon,9,22018619,22018668,22018619,22018620,50,+,CGAAGCCGAAACCCTTGCACTTGTTGGTGGTGAAATCACGGATGACCTTG,"Exon (Elavl3-201/Elavl3, exon 7 of 7)",9,22015005,22052010,37006,2,Elavl3-201,33342,Elavl3-201;Elavl3-202;Elavl3-203;Prkcsh-205;Prkcsh-201;Prkcsh-202,Elavl3;Elavl3;Elavl3;Prkcsh;Prkcsh;Prkcsh,0;0;33355;15813;15601;15553,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,5,15571,ENSMUSG00000003410,conserved gene and region,9,22018547,22018903,357,*,357,26,0.62464986,0.746621622,0.072829132,1.72E-16,CpGisland,TRUE,U11,Tr-P
11879,cg14444195,-0.00000122,0.000000708,-1.725984866,0.085346532,loss,ns,0.000000401,0.0000012,0.333097706,0.739285696,pos,ns,-0.000131249,0.000352597,-0.372236021,0.709971465,neg,ns,0.148759106,-0.0000143,0.0000121,-1.177514081,0.2398936,neg,ns,0.979017908,Kpna3,Kpna3_Exon,14,61384608,61384657,61384656,61384657,50,+,GCGGCGGGGGATCCTTATTCCTGCAGAGATTGACAATGACCCATGTGACG,"Exon (Kpna3-201/Kpna3, exon 9 of 17)",14,61365211,61439874,74664,2,Kpna3-201,55217,Kpna3-201,Kpna3,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,16648,ENSMUSG00000021929,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5521,cg25310740,0.000000622,0.00000602,0.103287839,0.917801313,gain,ns,0.0000034,0.0000102,0.333061103,0.739313298,pos,ns,0.00119349,0.00299494,0.398502008,0.690534509,pos,ns,0.160814613,-0.000086,0.000102996,-0.835019814,0.40434961,neg,ns,0.922811447,Kalrn,Kalrn_Exon,16,34176384,34176433,34176384,34176385,50,+,CGACTTCGGGTCCCACACTTGAAAGGCATCCTGGAGAATCAACTCCCCCT,"Exon (Kalrn-201/Kalrn, exon 30 of 60)",16,33975495,34456917,481423,2,Kalrn-201,280484,Kalrn-201;Kalrn-217;Kalrn-208;Kalrn-207;Kalrn-206;Kalrn-202;Kalrn-205;Kalrn-204;Kalrn-218;Kalrn-203,Kalrn;Kalrn;Kalrn;Kalrn;Kalrn;Kalrn;Kalrn;Kalrn;Kalrn;Kalrn,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,18,22,545156,ENSMUSG00000061751,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27700,cg03883331,0.000000805,0.00000176,0.458162031,0.647157033,gain,ns,0.000000994,0.00000299,0.33299528,0.739362936,pos,ns,-0.000429508,0.00087476,-0.491000508,0.623773492,neg,ns,0.204973085,0.0000299,0.0000301,0.993145231,0.321413744,pos,ns,0.959140273,Zbtb18,Zbtb18_Exon,1,177447327,177447376,177447327,177447328,50,+,CGCTCTCCTGCTTGAATTCATGTATGAAGGGAAACTCCAGTTCAAAGACT,"Exon (Zbtb18-211/Zbtb18, exon 3 of 3)",1,177442466,177447486,5021,1,Zbtb18-211,4861,Zbtb18-209;Zbtb18-211;Zbtb18-208;Zbtb18-203;Zbtb18-202;Zbtb18-204;Zbtb18-206;Zbtb18-210;Zbtb18-205;Zbtb18-212;Zbtb18-207;Zbtb18-201,Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,22,30928,ENSMUSG00000063659,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17612,cg22807065,0.00000533,0.00000313,1.704403172,0.089307755,gain,ns,0.00000177,0.00000531,0.332854091,0.739469411,pos,ns,-0.0000978,0.001556312,-0.062810436,0.949957934,neg,ns,0.022295626,-0.0000441,0.0000535,-0.824337658,0.410381525,neg,ns,0.922358928,Elavl2,Elavl2_Exon,4,91253252,91253301,91253252,91253253,50,-,CGTTTTGTTTGTCTTAAAGGAGACCTGCAGTACTCTGTCTCCCAGACGGT,"Exon (Elavl2-204/Elavl2, exon 6 of 6)",4,91250763,91372034,121272,2,Elavl2-204,118733,Elavl2-204;Elavl2-201;Elavl2-207;Elavl2-208;Elavl2-202;Elavl2-209;Elavl2-210;Elavl2-206;Elavl2-203;Elavl2-205,Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,31,15569,ENSMUSG00000008489,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8266,cg18233635,0.000000706,0.00000289,0.244193534,0.807242473,gain,ns,0.00000163,0.00000491,0.332850607,0.739472038,pos,ns,0.003032558,0.0014387,2.107846073,0.035846845,pos,ns,1.445549067,-0.000108111,0.0000495,-2.185078177,0.029631494,neg,ns,0.941881116,Ebf1,Ebf1_Exon,11,44907901,44907950,44907949,44907950,50,-,AAGCAGCTACTCCCTGTATCAAAGCCATCAGCCCGAGTGAAGGATGGACG,"Exon (Ebf1-203/Ebf1, exon 9 of 16)",11,44617317,45004995,387679,1,Ebf1-203,290584,Ebf1-203;Ebf1-202;Ebf1-201;Ebf1-206,Ebf1;Ebf1;Ebf1;Ebf1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,15,80,13591,ENSMUSG00000057098,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15163,cg17659328,-0.00000312,0.00000095,-3.281480865,0.00115043,loss,ns,0.000000537,0.00000161,0.332811557,0.739501489,pos,ns,0.0000699,0.000472681,0.147875774,0.882536942,pos,ns,0.054267106,-0.000029,0.0000163,-1.781614498,0.075791,neg,ns,0.013125033,Polg,Polg_Promoter,7,79466442,79466491,79466490,79466491,50,-,GCGTCTGACTTCGGATCAGAAGATTGCAGGTTCGAGTCCTGCCGCGGTCG,Promoter (<=1kb),7,79446231,79466362,20132,2,Polg-201,-129,Polg-201;Polg-203;Polg-213;Polg-205;Polg-210;Polg-216;Polg-202,Polg;Polg;Polg;Polg;Polg;Polg;Polg,0;0;0;0;-4638;0;-372,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,16,18975,ENSMUSG00000039176,conserved gene but different region,7,79465738,79466491,754,*,754,94,0.716180371,0.976576279,0.124668435,2.44E-81,CpGisland,TRUE,U1,Pr-A
11709,cg14350002,0.0000872,0.0000136,6.431005401,4.79E-10,gain,yes,-0.00000766,0.000023,-0.332642995,0.739628615,neg,ns,0.009904079,0.006747863,1.467735537,0.143189918,pos,ns,0.84408756,-0.000388538,0.000232058,-1.674311575,0.095077916,neg,ns,0.088117031,Gas1,Gas1_Exon,13,60177369,60177418,60177417,60177418,50,+,GACTCGTTAGCAGCGAGGCTTTAAATACAAAAGTGGGCCGGGAGCCCCCG,Promoter (<=1kb),13,60174405,60177365,2961,2,Gas1-201,-4,Gas1-201;Gas1-202,Gas1;Gas1,-4;-428,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,10,14451,ENSMUSG00000052957,conserved gene but different region,13,60175691,60177433,1743,*,1743,227,0.724039013,0.993923332,0.130235227,1.73E-200,CpGisland,TRUE,U3,Pr-B
11708,cg04908805,0.0000172,0.0000184,0.933269512,0.351407156,gain,ns,-0.0000104,0.0000313,-0.33258298,0.739673879,neg,ns,-0.000377991,0.009167453,-0.04123185,0.967137605,neg,ns,0.01451173,0.000217756,0.000315268,0.690701632,0.490269899,pos,ns,0.328644361,Gas1,Gas1_Intergenic_downstream,13,60173744,60173793,60173792,60173793,50,-,TGTATCAGCACTCGACACAGCTTAAGAGTGTAATTATTTATCTAAGGGCG,Distal Intergenic,13,60175787,60176941,1155,2,Gas1-202,3197,Gas1-201;Gas1-202,Gas1;Gas1,3572;3148,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,10,14451,ENSMUSG00000052957,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
27405,cg06191529,-0.00000347,0.00000182,-1.913131171,0.056652298,loss,ns,-0.00000103,0.00000308,-0.332501338,0.739735456,neg,ns,-0.000738907,0.000903478,-0.817846374,0.414073073,neg,ns,0.382923011,0.0000247,0.0000311,0.796245607,0.426498624,pos,ns,0.958433917,Arfgef2,Arfgef2_Exon,2,166894636,166894685,166894684,166894685,50,+,TACCCCTACTTGTGTGAAATTATGCAGTTTGACCTGATCCCTGAGCTCCG,"Exon (Arfgef2-201/Arfgef2, exon 39 of 39)",2,166805588,166898052,92465,1,Arfgef2-201,89048,Arfgef2-201,Arfgef2,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,99371,ENSMUSG00000074582,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14262,cg19186734,0.0000631,0.0000125,5.04444698,0.000000776,gain,yes,-0.00000706,0.0000212,-0.332478763,0.739752483,neg,ns,0.021783039,0.006221105,3.501474161,0.000530646,pos,ns,3.275195481,-0.000589339,0.000213943,-2.75464964,0.006222696,neg,ns,0.271914326,Nhej1,Nhej1_Intron,1,75010404,75010453,75010452,75010453,50,+,GTCCCATATTTACCAGCTTTATAAATGGGACTGACCACAGCTGCCCCACG,"Intron (Nhej1-201/Nhej1, intron 2 of 4)",1,74967139,75046639,79501,2,Nhej1-201,36186,Nhej1-201,Nhej1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,5,75570,ENSMUSG00000026162,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
210,cg18555579,-0.000000309,0.000000397,-0.779061351,0.436537875,loss,ns,-0.000000224,0.000000675,-0.332470481,0.739758729,neg,ns,-0.00028746,0.000197708,-1.453960114,0.146969014,neg,ns,0.83277422,0.00000659,0.0000068,0.969440404,0.333081252,pos,ns,0.988295318,Gm21992,Gm21992_Exon,19,4787387,4787436,4787387,4787388,50,-,CGCCCGATCGGCATACTGCTCCCGCTCATACCGGGCCATGTCGTACAGAG,"Exon (Rbm4-206/Rbm4, exon 3 of 4)",19,4742913,4811612,68700,2,Gm21992-203,24176,Gm21992-203;Gm21992-206;Gm21992-204;Gm21992-201;Gm21992-205;Rbm4-206;Rbm4-203;Rbm4-207;Rbm4-201;Rbm4-204;Rbm4-202;Rbm4-205,Gm21992;Gm21992;Gm21992;Gm21992;Gm21992;Rbm4;Rbm4;Rbm4;Rbm4;Rbm4;Rbm4;Rbm4,0;0;0;0;0;0;0;0;0;0;0;6447,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,27,48,102902673,ENSMUSG00000096370,mapped to different genes,19,4787385,4787552,168,*,168,16,0.642857143,0.933333333,0.095238095,3.56E-12,CpGisland,TRUE,U10,Tr-S
19224,cg09101317,-0.00000522,0.00000351,-1.486885721,0.138061359,loss,ns,0.00000198,0.00000597,0.332283135,0.739900039,pos,ns,-0.000942299,0.001748222,-0.539004118,0.590270883,neg,ns,0.228948639,-0.0000215,0.0000601,-0.357149745,0.72122271,neg,ns,0.893275058,Msl1,Msl1_Exon,11,98799170,98799219,98799170,98799171,50,-,CGGATGCAGCTGGTAAAGAAGGATAACGAGAAAGAAAGGCACAAGCTGTT,"Exon (Msl1-201/Msl1, exon 2 of 9)",11,98795516,98807859,12344,1,Msl1-201,3654,Msl1-201;Msl1-203;Msl1-204;Msl1-202;Msl1-205,Msl1;Msl1;Msl1;Msl1;Msl1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,11,13,74026,ENSMUSG00000052915,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20902,cg12649001,0.000113244,0.000011,10.26907769,1.74E-21,gain,yes,-0.00000622,0.0000187,-0.332157861,0.739994535,neg,ns,0.019890967,0.005488568,3.624072284,0.00033881,pos,ns,3.470043193,-0.00011406,0.000188751,-0.604287404,0.546094568,neg,ns,0.243204098,Pax6,Pax6_Exon,2,105685816,105685865,105685816,105685817,50,-,CGAAAAGCAACAGATGGGCGCAGACGGCATGTATGATAAACTAAGGATGT,"Exon (Pax6-206/Pax6, exon 7 of 13)",2,105668900,105697364,28465,1,Pax6-206,16916,Pax6-206;Pax6-207;Pax6-210;Pax6-214;Pax6-208;Pax6-202;Pax6-205;Pax6-225;Pax6-204;Pax6-201;Pax6-203;Pax6-224;Pax6-219;Pax6-221;Pax6-213;Pax6-211;Pax6-222;Pax6-212;Pax6-215;Pax6-223;Pax6-209;Pax6-216,Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,Exon,31,78,18508,ENSMUSG00000027168,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
3340,cg24145298,-0.0000173,0.00000392,-4.41372348,0.000014,loss,ns,-0.00000221,0.00000666,-0.332142113,0.740006414,neg,ns,-0.002425602,0.001950165,-1.24379334,0.214515338,neg,ns,0.66854165,-0.0000194,0.0000671,-0.289791514,0.772169472,neg,ns,0.923478458,Gm11890,Gm11890_Intergenic_upstream,4,23732653,23732702,23732653,23732654,50,-,CGGGGCCTTTACCACCATAAAACAAAAGATGTAGATGAAAAATGCTGCAA,Distal Intergenic,4,23659928,23660344,417,2,Gm11890-201,-72358,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,15,32,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15960,cg09161679,0.0000018,0.00000166,1.082805879,0.279736102,gain,ns,0.000000935,0.00000282,0.332105921,0.740033715,pos,ns,0.000595818,0.000825201,0.722028207,0.47082141,pos,ns,0.327143797,-0.0000401,0.0000284,-1.414426678,0.158240239,neg,ns,0.955159776,Tshz1,Tshz1_Intron,18,84031454,84031503,84031502,84031503,50,+,TCATTTGACCTACACAGCATGGCAGAAACTTGGAGAAGTCTCATAAAGCG,"Intron (Tshz1-201/Tshz1, intron 1 of 1)",18,84011627,84086404,74778,2,Tshz1-201,54901,Tshz1-201;Tshz1-202;Tshz1-203;Tshz1-204,Tshz1;Tshz1;Tshz1;Tshz1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,18,110796,ENSMUSG00000046982,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12435,cg08033716,-0.00000325,0.00000263,-1.235953412,0.217411587,loss,ns,-0.00000148,0.00000447,-0.332082985,0.740051016,neg,ns,0.0000593,0.001308782,0.04531962,0.963881728,pos,ns,0.015976252,-0.0000443,0.000045,-0.984466846,0.325653746,neg,ns,0.956927205,Grid2,Grid2_Exon,6,64320045,64320094,64320045,64320046,50,+,CGAAGAAATACCAGGGCTTCTCCATTGATGTTTTGGATGCCTTATCTAAC,"Exon (Grid2-201/Grid2, exon 10 of 16)",6,63256027,64668285,1412259,1,Grid2-201,1064018,Grid2-201,Grid2,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,10,14804,ENSMUSG00000071424,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25471,cg26460068,-0.0000484,0.0000109,-4.445151514,0.0000123,loss,ns,0.00000614,0.0000185,0.332029205,0.740091585,pos,ns,-0.016889497,0.005418163,-3.117200035,0.001996906,neg,ns,2.699642304,0.000405186,0.00018633,2.174556952,0.030419247,pos,ns,0.751625376,Gm8762,Gm8762_Intergenic_downstream,1,136777402,136777451,136777402,136777403,50,+,CGGGGGTCAGGGCAGAGCCTGTTGATGATTGAGGAAAAGAGAAGTAAATT,Distal Intergenic,1,136789182,136789520,339,2,Gm8762-201,12069,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,4,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2155,cg04115989,0.00000237,0.00000705,0.335995759,0.737101364,gain,ns,0.00000397,0.000012,0.331878535,0.740205247,pos,ns,-0.003035842,0.003508235,-0.865347384,0.387517319,neg,ns,0.411708883,0.0000994,0.000120648,0.823599765,0.410800167,pos,ns,0.818493621,Pou6f2,Pou6f2_threeUTR,13,18125499,18125548,18125499,18125500,50,+,CGCTCAAGCACCGGCTTGATCTTCTGGGCACTTTTAGGGGTGATGTCCAG,3' UTR,13,18121098,18382041,260944,2,Pou6f2-201,256493,Pou6f2-201;Pou6f2-202;Pou6f2-204,Pou6f2;Pou6f2;Pou6f2,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,7,18,218030,ENSMUSG00000009734,conserved gene and region,13,18125393,18125511,119,*,119,9,0.588235294,0.885856079,0.075630252,0.00000392,CpGisland,TRUE,U15,NS
23811,cg22189511,-0.0000563,0.0000099,-5.682578799,3.06E-08,loss,yes,0.00000558,0.0000168,0.331751157,0.740301343,pos,ns,-0.015048402,0.004927701,-3.053838425,0.002455271,neg,ns,2.609900617,-0.0000197,0.000169463,-0.11629667,0.907492726,neg,ns,0.800457876,Gm42927,Gm42927_Intergenic_downstream,3,120429652,120429701,120429652,120429653,50,+,CGAGATTTGTGAGTCTGGTACTCTGGGGCCATTTAATTAATTAGATGGTA,Distal Intergenic,3,120735721,120739561,3841,2,Gm42927-201,309860,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,7,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17705,cg11209832,0.0000273,0.00000574,4.755482646,0.00000304,gain,ns,0.00000323,0.00000975,0.331454161,0.740525416,pos,ns,0.00163851,0.002855423,0.573823886,0.566503064,pos,ns,0.246797737,-0.0000262,0.0000982,-0.266355891,0.790142207,neg,ns,0.070996529,Zic4,Zic4_Intergenic_downstream,9,91394543,91394592,91394591,91394592,50,-,CCACTTCGCACCTGCAGTCTGAATAGGGCTCCTTGTCAATGGGGGACACG,Distal Intergenic,9,91382410,91388044,5635,1,Zic4-202,12182,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,55,22774,ENSMUSG00000036972,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
23771,cg13838363,0.00000406,0.0000116,0.351584731,0.72538857,gain,ns,-0.0000065,0.0000196,-0.331246946,0.740681766,neg,ns,-0.002944201,0.005752568,-0.511806471,0.609150849,neg,ns,0.215275146,0.000213315,0.00019783,1.078271054,0.281751111,pos,ns,0.20813066,Foxo6,Foxo6_Intergenic_upstream,4,120304846,120304895,120304846,120304847,50,-,CGGAACAAACAAGCTGTGAGAAACAGTTTACAAAACAGCGAGGTGTGACT,Distal Intergenic,4,120267079,120287349,20271,2,Foxo6-201,-17546,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,9,42,329934,ENSMUSG00000052135,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
341,cg15169412,0.0000401,0.0000149,2.690151581,0.007528955,gain,ns,-0.00000839,0.0000253,-0.331200768,0.74071661,neg,ns,-0.005535409,0.00741896,-0.746116503,0.456162452,neg,ns,0.340880465,0.000367624,0.000255137,1.440886353,0.150626062,pos,ns,0.339073822,Zfhx4,Zfhx4_Promoter,3,5212365,5212414,5212413,5212414,50,+,TTTGCTATAGATTTCCGTTTATCTAATCGATCGGAATGCCAATAAAATCG,Promoter (6-7kb),3,5218526,5413165,194640,1,Zfhx4-203,-6112,NA,NA,NA,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,10,77,80892,ENSMUSG00000025255,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20803,cg01846853,-0.00000118,0.00000202,-0.584359679,0.559403355,loss,ns,0.00000113,0.00000343,0.331192051,0.740723187,pos,ns,0.00199052,0.001003615,1.983350344,0.048210382,pos,ns,1.316859427,-0.0000182,0.0000345,-0.526628068,0.598828498,neg,ns,0.944138019,Fam160a2,Fam160a2_threeUTR,7,105381371,105381420,105381371,105381372,50,-,CGCACCCATGCATGCATGCATCGCACACCTGCAGCAGGGACTTGACACTG,3' UTR,7,105371211,105400054,28844,2,Fam160a2-208,18634,Fam160a2-208;Fam160a2-213;Fam160a2-206;Fam160a2-201;Fam160a2-203;Fam160a2-202;Fam160a2-204;Fam160a2-210;Fam160a2-207;Fam160a2-211;Fam160a2-212;Fam160a2-205;Gm5901-203;Gm5901-201;Gm5901-202,Fam160a2;Fam160a2;Fam160a2;Fam160a2;Fam160a2;Fam160a2;Fam160a2;Fam160a2;Fam160a2;Fam160a2;Fam160a2;Fam160a2;Gm5901;Gm5901;Gm5901,0;0;0;0;0;0;0;0;0;0;8094;7691;6333;6321;3548,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,5,5,74349,ENSMUSG00000044465,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4843,cg09186649,-0.0000151,0.00000456,-3.314646982,0.001026404,loss,ns,-0.00000257,0.00000775,-0.331110862,0.740784451,neg,ns,-0.002751923,0.002269541,-1.212546314,0.226226574,neg,ns,0.645456381,0.000148426,0.000078,1.901688873,0.058138739,pos,ns,0.904307134,Phc3,Phc3_Exon,3,30948738,30948787,30948738,30948739,50,-,CGACGAGACAACAGGAATGTCAGACTGTACAGCAGCCACAGTGGTAGCGG,"Exon (Phc3-209/Phc3, exon 6 of 15)",3,30899371,30969401,70031,2,Phc3-209,20614,Phc3-209;Phc3-201;Phc3-204;Phc3-208;Phc3-202;Phc3-206;Phc3-210;Phc3-203,Phc3;Phc3;Phc3;Phc3;Phc3;Phc3;Phc3;Phc3,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,8,241915,ENSMUSG00000037652,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2679,cg20960545,0.0000538,0.00000971,5.547725927,6.21E-08,gain,yes,0.00000546,0.0000165,0.331085641,0.740803483,pos,ns,0.003611236,0.004830384,0.747608388,0.455263124,pos,ns,0.341737526,0.000159425,0.000166117,0.959720544,0.337943805,pos,ns,0.530822502,Slc44a2,Slc44a2_Exon,9,21353036,21353085,21353036,21353037,50,-,CGACCCTACTTCATGTCGCCCGAGCTGAGAGACATCCTGTTGAAGGGGAG,"Exon (Slc44a2-205/Slc44a2, exon 6 of 7)",9,21320698,21355028,34331,1,Slc44a2-210,32338,Slc44a2-210;Slc44a2-207;Slc44a2-201;Slc44a2-202;Slc44a2-209;Slc44a2-205;Slc44a2-203,Slc44a2;Slc44a2;Slc44a2;Slc44a2;Slc44a2;Slc44a2;Slc44a2,0;0;0;8154;6052;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,68682,ENSMUSG00000057193,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
18408,cg06380810,-0.00000484,0.00000203,-2.389628821,0.017462694,loss,ns,0.00000114,0.00000344,0.330838355,0.740990091,pos,ns,0.003166707,0.001008131,3.141165147,0.001845154,pos,ns,2.733967272,-0.0000887,0.0000347,-2.55763379,0.011014266,neg,ns,0.057792151,Gm11514,Gm11514_Intergenic_downstream,11,95210799,95210848,95210847,95210848,50,-,CATCAGCAGCTTGGCGGGCTCCCAAGGCCCACAGGCTGGGTACCTGGGCG,Distal Intergenic,11,95176813,95177244,432,1,Gm11514-201,34035,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,100504149,NA,mapped to different genes,11,95210732,95211007,276,*,276,17,0.692028986,0.524949653,0.061594203,8.17E-10,CpGisland,TRUE,U9,En-Pp
25841,cg01125845,0.00007,0.0000131,5.324447078,0.000000195,gain,yes,0.00000739,0.0000223,0.330762798,0.741047111,pos,ns,0.031722006,0.00654356,4.847820676,0.00000198,pos,ns,5.703901707,-0.001525057,0.000225032,-6.777053637,6.19E-11,neg,yes,0.350762553,Aldh4a1,Aldh4a1_threeUTR,4,139644170,139644219,139644170,139644171,50,+,CGCTGCAGCTGGTTGACAGCACCACCAGCTATGGCCTCACGGGGGCAGTG,3' UTR,4,139622866,139649690,26825,1,Aldh4a1-201,21304,Aldh4a1-201;Aldh4a1-203;Gm21969-201,Aldh4a1;Aldh4a1;Gm21969,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,212647,ENSMUSG00000028737,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6230,cg04249847,0.00000515,0.00000305,1.687978654,0.092421051,gain,ns,0.00000172,0.00000519,0.330705441,0.741090398,pos,ns,0.001694248,0.001519815,1.114772483,0.265811416,pos,ns,0.575426371,-0.000128474,0.0000523,-2.458071889,0.014515343,neg,ns,0.929146479,Tenm2,Tenm2_Intron,11,36475978,36476027,36475978,36475979,50,+,CGCTCACTTAATATTGATTCTGAATGTAATAACAAGCGACATGACCTTTT,"Intron (Tenm2-202/Tenm2, intron 4 of 30)",11,36006656,37235882,1229227,2,Tenm2-202,759855,Tenm2-202;Tenm2-208;Tenm2-201;Tenm2-204;Tenm2-205;Tenm2-206,Tenm2;Tenm2;Tenm2;Tenm2;Tenm2;Tenm2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,47,84,23964,ENSMUSG00000049336,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1022,cg16946265,0.0000635,0.0000148,4.293371259,0.0000236,gain,ns,-0.0000083,0.0000251,-0.330604039,0.741166926,neg,ns,0.019273977,0.007357849,2.619512428,0.009238724,pos,ns,2.034388001,-0.000497183,0.000253036,-1.964871587,0.050321901,neg,ns,0.336537081,Gm7575,Gm7575_Intergenic_upstream,18,10905368,10905417,10905368,10905369,50,+,CGGTGAGAGTGACCAGAGTGTTAGGTCAGTCCAAGGGTCACTTATAGGTC,Distal Intergenic,18,10928884,10931510,2627,1,Gm7575-201,-23467,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,665296,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5179,cg18776746,-0.0000039,0.00000303,-1.287115938,0.199014081,loss,ns,-0.0000017,0.00000515,-0.330518828,0.741231237,neg,ns,-0.004384032,0.001507516,-2.908115846,0.00389867,neg,ns,2.409083475,0.0001224,0.0000518,2.360964944,0.018846065,pos,ns,0.887218656,Stk10,Stk10_Exon,11,32600785,32600834,32600833,32600834,50,+,TGTGGTGGATGGTGTGGAGGTGAGCATCACCACCTCCAAGATCATCAGCG,"Exon (Stk10-201/Stk10, exon 10 of 19)",11,32533305,32624587,91283,1,Stk10-201,67480,Stk10-201;Stk10-202,Stk10;Stk10,0;12190,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,20868,ENSMUSG00000020272,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11468,cg16693082,-0.00000301,0.0000022,-1.367644083,0.172414178,loss,ns,0.00000123,0.00000373,0.330400011,0.741320914,pos,ns,0.001514632,0.001094136,1.384318166,0.167256736,pos,ns,0.776616384,-0.0000641,0.0000376,-1.70288065,0.089592736,neg,ns,0.956736593,Hnrnpk,Hnrnpk_fiveUTR,13,58397976,58398025,58397976,58397977,50,+,CGATCCAGTACATGGGCAACGGAGATATATGGCCAAAAAAACAAGGAGAG,Promoter (<=1kb),13,58395265,58398017,2753,2,Hnrnpk-207,0,Hnrnpk-202;Hnrnpk-224;Hnrnpk-221;Hnrnpk-232;Hnrnpk-216;Hnrnpk-201;Hnrnpk-205;Hnrnpk-217;Hnrnpk-206;Hnrnpk-209;Hnrnpk-213;Hnrnpk-227;Hnrnpk-234;Hnrnpk-233;Hnrnpk-228;Hnrnpk-214;Hnrnpk-215;Hnrnpk-211;Hnrnpk-208;Hnrnpk-212;Hnrnpk-231;Hnrnpk-230;Hnrnpk-203;Hnrnpk-218;Hnrnpk-226;Hnrnpk-207;Hnrnpk-219;Hnrnpk-225;Hnrnpk-229;Hnrnpk-223;Hnrnpk-220;Hnrnpk-210;Hnrnpk-204;Hnrnpk-222;Rmi1-205;Rmi1-201;Rmi1-204;Rmi1-203,Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Hnrnpk;Rmi1;Rmi1;Rmi1;Rmi1,0;0;0;0;0;0;0;-4108;-3191;-4001;-2778;-3892;-4087;-3806;-3280;0;-2256;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;4477;4030;-4223;-4238;-4675;-4918,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,10,19,15387,ENSMUSG00000021546,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20457,cg07022610,0.0000796,0.00000726,10.97560432,6.76E-24,gain,yes,-0.00000407,0.0000123,-0.330380675,0.741335509,neg,ns,0.009560281,0.003610916,2.64760554,0.008520907,pos,ns,2.069514169,-0.0000241,0.000124179,-0.194011483,0.846293959,neg,ns,0.030167607,Hoxc4,Hoxc4_Intergenic_downstream,15,103061662,103061711,103061662,103061663,50,-,CGCGCCAGCCTCCGCAGCCGCCTTTGTACGCGTGATTTATGACTTCAGTC,Distal Intergenic,15,103034395,103036852,2458,1,Hoxc4-201,27316,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,32,91,15423,ENSMUSG00000075394,mapped to different genes,15,103061537,103061809,273,*,273,19,0.586080586,0.8125,0.06959707,7.69E-12,CpGisland,TRUE,U13,Hc-P
15437,cg22413439,0.00000081,0.00000275,0.294488739,0.768581567,gain,ns,0.00000154,0.00000467,0.330247128,0.741436309,pos,ns,0.003729916,0.001369307,2.723943523,0.006816603,pos,ns,2.166432003,-0.000122661,0.0000471,-2.604797844,0.009635944,neg,ns,0.938405563,Tnrc6b,Tnrc6b_Exon,15,80889099,80889148,80889099,80889100,50,+,CGTCCACCTAATTCCAAAGACATGGGAACCACAGATAGTGGGCCTTATTT,"Exon (Tnrc6b-201/Tnrc6b, exon 13 of 25)",15,80711313,80941085,229773,1,Tnrc6b-201,177786,Tnrc6b-201;Tnrc6b-207;Tnrc6b-208;Tnrc6b-209;Tnrc6b-205,Tnrc6b;Tnrc6b;Tnrc6b;Tnrc6b;Tnrc6b,0;0;0;4749;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,20,24,213988,ENSMUSG00000047888,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5547,cg05992953,-0.00000364,0.00000174,-2.087490153,0.037660142,loss,ns,0.000000977,0.00000296,0.330215965,0.741459831,pos,ns,0.000490192,0.000867061,0.565348906,0.572245399,pos,ns,0.24241769,0.00000727,0.0000298,0.243792644,0.807552676,pos,ns,0.959038609,Pbx3,Pbx3_Intron,2,34229684,34229733,34229732,34229733,50,-,ACAAGGCTTTTCAGTTAAATGGACATAAATCACAGGTTTCATTCAAACCG,"Intron (Pbx3-202/Pbx3, intron 2 of 7)",2,34171457,34372038,200582,2,Pbx3-202,142305,Pbx3-202;Pbx3-201;Pbx3-210;Pbx3-206;Pbx3-207;Pbx3-209;Pbx3-204;Pbx3-205;Pbx3-203,Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,82,18516,ENSMUSG00000038718,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10234,cg20222611,-0.00000908,0.00000906,-1.002070107,0.317091267,loss,ns,0.00000508,0.0000154,0.330191349,0.741478411,pos,ns,-0.004636704,0.004508782,-1.028371746,0.304576705,neg,ns,0.516303316,0.000376348,0.000155057,2.427164579,0.015786857,pos,ns,0.472524063,Hoxa13,Hoxa13_Intergenic_downstream,6,52257124,52257173,52257124,52257125,50,-,CGAGGTGGCGCCCTTGATCTACTAATCCAGCTAAGGCCAATTCATGAGCT,Distal Intergenic,6,52258871,52260802,1932,2,Hoxa13-206,3678,Hoxa13-203;Hoxa13-201;Hoxa13-202;Hoxa13-204;Hoxa13-205;Hoxa13-206,Hoxa13;Hoxa13;Hoxa13;Hoxa13;Hoxa13;Hoxa13,0;0;0;0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,12,15398,ENSMUSG00000038203,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
12971,cg19478098,-0.00000309,0.00000282,-1.095216598,0.274271925,loss,ns,0.00000158,0.0000048,0.33013316,0.741522334,pos,ns,0.002559902,0.001405276,1.821636762,0.06947372,pos,ns,1.158179448,-0.000137455,0.0000483,-2.84424617,0.004747651,neg,ns,0.930468754,Gm8344,Gm8344_Intergenic_upstream,X,68958009,68958058,68958009,68958010,50,-,CGGCTCAGCAGTTTCTTTCACAAGATCCTCCTGACATGACACATGCCATC,Distal Intergenic,20,68921157,68922012,856,2,Gm8344-201,-36046,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,666882,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23290,cg07199170,-0.00000183,0.00000147,-1.242970855,0.214817864,loss,ns,0.000000825,0.0000025,0.330091514,0.74155377,pos,ns,-0.000819008,0.000732322,-1.118371655,0.264274185,neg,ns,0.577945258,0.0000262,0.0000252,1.039955875,0.299170813,pos,ns,0.96487656,Eri3,Eri3_Intron,4,117649875,117649924,117649923,117649924,50,-,GAATTATTTAAACCTCACCAGCTTTTAATTAGTCGGGGTCCTTCTGACCG,"Intron (Eri3-201/Eri3, intron 8 of 8)",4,117550365,117674297,123933,1,Eri3-201,99510,Eri3-201;Eri3-206;Eri3-203,Eri3;Eri3;Eri3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,82,97,140546,ENSMUSG00000033423,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19984,cg20125647,0.00000228,0.0000018,1.267625272,0.205883125,gain,ns,0.00000101,0.00000306,0.33006732,0.741572033,pos,ns,0.001205808,0.000897017,1.344241477,0.179853183,pos,ns,0.745081872,-0.0000422,0.0000308,-1.367230524,0.172543598,neg,ns,0.088190289,Sost,Sost_Exon,11,101963948,101963997,101963996,101963997,50,-,CTTGAGCTCCGACTGGTTGTGGAAGCGGGTGAGGCGCTTGCACTTGCACG,"Exon (Sost-201/Sost, exon 2 of 2)",11,101962458,101967015,4558,2,Sost-201,3018,Sost-201,Sost,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,74499,ENSMUSG00000001494,conserved gene and region,11,101963805,101964286,482,*,482,66,0.713692946,1.078263228,0.136929461,2.07E-60,CpGisland,TRUE,U3,Pr-B
20069,cg13510262,-0.0000655,0.0000176,-3.728405548,0.000229033,loss,ns,-0.00000985,0.0000298,-0.32997099,0.741644749,neg,ns,-0.003584964,0.008743255,-0.410026266,0.68206989,neg,ns,0.166171122,-0.00058806,0.00030068,-1.955766976,0.051390575,neg,ns,0.124904921,Sp1,Sp1_fiveUTR,15,102406377,102406426,102406377,102406378,50,+,CGGACAGGACCCCCTTGAGCTTGTCCCTCAGCTGCCACCATGAGCGGTAA,Promoter (<=1kb),15,102406380,102436404,30025,1,Sp1-201,0,Sp1-206;Sp1-202;Sp1-201;Sp1-203;Sp1-205;Sp1-204,Sp1;Sp1;Sp1;Sp1;Sp1;Sp1,0;0;0;0;-843;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,4,20683,ENSMUSG00000001280,conserved gene and region,15,102406238,102406920,683,*,683,70,0.756954612,0.717738546,0.102489019,4.59E-54,CpGisland,TRUE,U1,Pr-A
2220,cg00738648,-0.00000355,0.00000295,-1.206586081,0.228511547,loss,ns,0.00000165,0.000005,0.329772822,0.741794345,pos,ns,-0.001104014,0.001466042,-0.753057498,0.451986865,neg,ns,0.344874186,0.0000745,0.0000504,1.477502617,0.140556164,pos,ns,0.921231582,Gm37317,Gm37317_Intergenic_upstream,3,18670558,18670607,18670558,18670559,50,-,CGAGCAGGAACTCGAGCACCAGACTCTTGTCCCTGACAGATTCATTTGAA,Distal Intergenic,3,18609808,18610831,1024,2,Gm37317-201,-59776,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,10,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17938,cg03711808,-0.00000189,0.00000114,-1.657505644,0.098428878,loss,ns,0.000000639,0.00000194,0.329680188,0.741864278,pos,ns,0.0000788,0.000567797,0.138718651,0.889762548,pos,ns,0.050725878,0.000015,0.0000195,0.767896332,0.443133293,pos,ns,0.03275244,Pcf11,Pcf11_Exon,7,92669468,92669517,92669516,92669517,50,+,GGCGAAGGGCAGGTTCTCCTCGGCTAGAATGGTCAGCATATTGATGTGCG,Promoter (<=1kb),7,92643543,92669934,26392,2,Pcf11-201,417,Pcf11-201;Pcf11-205;Pcf11-204,Pcf11;Pcf11;Pcf11,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,8,74737,ENSMUSG00000041328,conserved gene and region,7,92669413,92670159,747,*,747,79,0.654618474,0.987863671,0.105756359,4.14E-62,CpGisland,TRUE,U1,Pr-A
20140,cg04735138,0.00000144,0.00000171,0.844710576,0.398923885,gain,ns,0.000000955,0.0000029,0.329649333,0.741887572,pos,ns,0.000647111,0.000848614,0.762549871,0.446311719,pos,ns,0.35036171,-0.0000183,0.0000292,-0.628645169,0.530044292,neg,ns,0.046909951,Amotl2,Amotl2_fiveUTR,9,102717705,102717754,102717705,102717706,50,-,CGCTTTGATCCCGAGGGGGAACCTGAAACTCTCACATTCCTGGCATAGCA,5' UTR,9,102716672,102720721,4050,1,Amotl2-208,1033,Amotl2-208;Amotl2-211;Amotl2-210;Amotl2-201;Amotl2-207;Amotl2-213;Amotl2-209;Amotl2-204;Amotl2-214;Amotl2-203;Amotl2-212;Amotl2-206,Amotl2;Amotl2;Amotl2;Amotl2;Amotl2;Amotl2;Amotl2;Amotl2;Amotl2;Amotl2;Amotl2;Amotl2,0;0;0;0;0;-675;-716;-731;-814;-2533;-4562;-4780,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,1,56332,ENSMUSG00000032531,conserved gene and region,9,102717598,102717717,120,*,120,15,0.741666667,1.001112347,0.125,2.72E-13,CpGisland,TRUE,U1,Pr-A
3264,cg09141136,0.000000342,0.00000175,0.1961435,0.844626364,gain,ns,0.000000977,0.00000297,0.329487259,0.742009934,pos,ns,0.0008986,0.000868673,1.034451585,0.301731392,pos,ns,0.520379504,-0.0000399,0.0000299,-1.336536396,0.182354123,neg,ns,0.963022961,Usp34,Usp34_Exon,11,23414775,23414824,23414775,23414776,50,-,CGACTTATGTCTGTTGCTTATACGTATGATAATCTGGCTCCTAGGTATGC,"Exon (Usp34-208/Usp34, exon 35 of 80)",11,23306895,23490560,183666,1,Usp34-208,107880,Usp34-208;Usp34-205;Usp34-207,Usp34;Usp34;Usp34,0;0;-152,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,13,14,17847,ENSMUSG00000056342,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10889,cg23276047,-0.00000012,0.00000159,-0.075628481,0.939763459,loss,ns,-0.000000887,0.00000269,-0.329399724,0.742076023,neg,ns,0.001068353,0.000789122,1.353850691,0.176770196,pos,ns,0.752590957,-0.0000377,0.0000271,-1.389776775,0.165593897,neg,ns,0.067944533,Tcf7l2,Tcf7l2_Exon,19,55743071,55743120,55743119,55743120,50,+,AGCGGCCAAGAGGCAAGATGGAGGGCTCTTTAAGGGGCCACCGTATCCCG,"Exon (Tcf7l2-213/Tcf7l2, exon 3 of 14)",19,55741820,55933229,191410,1,Tcf7l2-213,1251,Tcf7l2-213;Tcf7l2-201;Tcf7l2-208;Tcf7l2-211;Tcf7l2-212;Tcf7l2-206;Tcf7l2-204;Tcf7l2-205;Tcf7l2-222;Tcf7l2-215;Tcf7l2-214;Tcf7l2-207;Tcf7l2-202;Tcf7l2-209;Tcf7l2-210;Tcf7l2-217,Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,88,21416,ENSMUSG00000024985,conserved gene but different region,19,55742346,55743300,955,*,955,108,0.695287958,0.957446809,0.113089005,3.72E-88,CpGisland,TRUE,U1,Pr-A
21108,cg13502730,0.0000218,0.00000301,7.234125594,3.70E-12,gain,yes,0.00000168,0.00000511,0.329365432,0.742101915,pos,ns,0.004177066,0.001498049,2.788336822,0.00562531,pos,ns,2.249853505,-0.0000576,0.0000515,-1.118537639,0.264203441,neg,ns,0.064206683,Barhl2,Barhl2_Intron,5,106468748,106468797,106468796,106468797,50,+,TTAGTTCCACGCTATGAGCTAAGTTGATAACATGAAAAGACCCATAAACG,"Intron (Gm26872-201/Gm26872-201, intron 1 of 1)",5,106452523,106458166,5644,2,Barhl2-201,-10582,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,27,104382,ENSMUSG00000034384,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
11671,cg20630917,-0.00000582,0.00000517,-1.12527251,0.261344035,loss,ns,0.00000289,0.00000879,0.329297018,0.742153569,pos,ns,0.004755733,0.00257517,1.846764866,0.065734153,pos,ns,1.182208926,-0.000200932,0.0000886,-2.26888408,0.023962519,neg,ns,0.918476842,Tanc1,Tanc1_Exon,2,59799651,59799700,59799651,59799652,50,-,CGCCTACGTCCAGCACAGGGTGCACAGCAGCCAGGACATCCTCAGCAACA,"Exon (Tanc1-203/Tanc1, exon 14 of 27)",2,59612042,59845717,233676,1,Tanc1-203,187609,Tanc1-203;Tanc1-201;Tanc1-208;Tanc1-202,Tanc1;Tanc1;Tanc1;Tanc1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,66860,ENSMUSG00000035168,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6627,cg05028132,0.00000285,0.00000428,0.666605254,0.505520122,gain,ns,-0.0000024,0.00000728,-0.329293585,0.742156162,neg,ns,0.000811528,0.002131366,0.380754704,0.703646057,pos,ns,0.152645742,-0.0000515,0.0000733,-0.702839398,0.482683298,neg,ns,0.91504121,Zfp536,Zfp536_Intergenic_upstream,7,37833519,37833568,37833567,37833568,50,+,TTGTGCTCCCATCTGCCCTTTTCAGGAGCTAAATTATGTGCATTAGTACG,Distal Intergenic,7,37569629,37773641,204013,2,Zfp536-208,-59878,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,112,243937,ENSMUSG00000043456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10452,cg27723057,-0.00000654,0.00000137,-4.77779711,0.00000274,loss,ns,0.000000765,0.00000232,0.329276296,0.742169215,pos,ns,-0.000594106,0.000680784,-0.872678163,0.383513958,neg,ns,0.416218826,0.0000316,0.0000234,1.351734057,0.177445868,pos,ns,0.048458587,Asf1a,Asf1a_fiveUTR,10,53596958,53597007,53596958,53596959,50,-,CGCTGCTACTTATCAGAGCAGAATGGGCTGTAGTTTAGTGAAATAGGAAA,Promoter (<=1kb),10,53596757,53607912,11156,1,Asf1a-204,201,Asf1a-204;Asf1a-201;Asf1a-203;Asf1a-206;Asf1a-205;Mcm9-208;Mcm9-203;Mcm9-201;Mcm9-206;Mcm9-207,Asf1a;Asf1a;Asf1a;Asf1a;Asf1a;Mcm9;Mcm9;Mcm9;Mcm9;Mcm9,0;0;0;-445;0;0;-3797;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,5,66403,ENSMUSG00000019857,mapped to different genes,10,53596540,53596959,420,*,420,52,0.738095238,0.922920893,0.123809524,4.68E-45,CpGisland,TRUE,U1,Pr-A
6863,cg03639871,-0.00000939,0.00000882,-1.064582964,0.287893192,loss,ns,0.00000493,0.000015,0.329262418,0.742179694,pos,ns,0.000367457,0.004388553,0.083730837,0.933324482,pos,ns,0.029967342,-0.000225938,0.000150922,-1.497053079,0.135396895,neg,ns,0.704864106,Slc35b3,Slc35b3_Intergenic_upstream,13,38976885,38976934,38976933,38976934,50,-,GCTCAATCCCTCTTCCATCTCAGATTTGATTGTTATGGTATTGCCTGGCG,Distal Intergenic,13,38932136,38960875,28740,2,Slc35b3-201,-16059,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,9,11,108652,ENSMUSG00000021432,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3840,cg21880016,-0.0000028,0.00000359,-0.780486712,0.435699993,loss,ns,-0.00000201,0.0000061,-0.329134203,0.742276505,neg,ns,-0.002810835,0.001786654,-1.573239196,0.116683454,neg,ns,0.932990723,0.0000949,0.0000614,1.544569575,0.123470606,pos,ns,0.919052306,Fgfr1,Fgfr1_threeUTR,8,25564426,25564475,25564474,25564475,50,+,CTTGGCGGGTAACTCTATCGGACTCTCCCATCACTCTGCATGGTTGACCG,3' UTR,8,25518759,25575718,56960,1,Fgfr1-201,45667,Fgfr1-201;Fgfr1-214;Fgfr1-215;Fgfr1-203;Fgfr1-202;Fgfr1-213;Fgfr1-208;Fgfr1-209;Fgfr1-206;Fgfr1-216;Fgfr1-204;Fgfr1-219,Fgfr1;Fgfr1;Fgfr1;Fgfr1;Fgfr1;Fgfr1;Fgfr1;Fgfr1;Fgfr1;Fgfr1;Fgfr1;Fgfr1,0;0;0;0;0;0;0;0;0;-1525;-2375;-2391,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,7,8,14182,ENSMUSG00000031565,conserved gene and region,8,25564233,25564590,358,*,358,20,0.561452514,0.708910891,0.055865922,1.13E-10,CpGisland,TRUE,U15,NS
10766,cg09441448,-0.00000252,0.00000104,-2.417870465,0.016187997,loss,ns,0.000000582,0.00000177,0.328947048,0.742417826,pos,ns,0.001261517,0.00051837,2.433620769,0.015513399,pos,ns,1.809293048,-0.0000389,0.0000178,-2.18028842,0.029987903,neg,ns,0.970894343,Nsd1,Nsd1_Exon,13,55277350,55277399,55277350,55277351,50,+,CGCCCACTACCCGCCCAATCACAGCAGGGTTAGAACTAACATTGCATGCA,"Exon (Nsd1-202/Nsd1, exon 4 of 5)",13,55209782,55315755,105974,1,Nsd1-207,67568,Nsd1-207;Nsd1-201;Nsd1-202,Nsd1;Nsd1;Nsd1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,7,18193,ENSMUSG00000021488,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14785,cg25475466,-0.000000876,0.00000489,-0.179133551,0.857949859,loss,ns,0.00000273,0.0000083,0.328815452,0.742517201,pos,ns,0.005275981,0.002432952,2.168551103,0.030876977,pos,ns,1.51036523,-0.000174454,0.0000837,-2.085053001,0.037882411,neg,ns,0.915219973,Gm11146,Gm11146_Exon,16,77646295,77646344,77646343,77646344,50,+,TTGTGAGGTATTTTAGTAACATCACAAGTCAGGCTCTTGGGACCTAGGCG,"Exon (Mir125b-2-201/Mir125b-2-201, exon 1 of 1)",16,77588578,77602094,13517,2,Gm11146-201,-44201,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,21,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9851,cg18813330,0.000012,0.0000109,1.101329072,0.271607839,gain,ns,0.00000611,0.0000186,0.328811411,0.742520253,pos,ns,0.010444757,0.005442653,1.919055975,0.055895194,pos,ns,1.25262553,-0.000300545,0.000187172,-1.605710784,0.109355616,neg,ns,0.298916606,Gm5040,Gm5040_Intergenic_upstream,10,51153640,51153689,51153640,51153641,50,+,CGCCTGTCTGATTTGGGGGCTCTGGCAAAAAGCCTGAGCCCATTGATTAC,Distal Intergenic,10,51238829,51239628,800,1,Gm5040-201,-85140,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,11,268300,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4174,cg24003894,0.0000291,0.00000853,3.410059613,0.000735481,gain,ns,0.00000476,0.0000145,0.328738284,0.742575476,pos,ns,0.005829743,0.004246251,1.372915334,0.170770971,pos,ns,0.767585953,-0.000154359,0.000146028,-1.057052081,0.291310848,neg,ns,0.57923546,Egln2,Egln2_Exon,7,27160296,27160345,27160344,27160345,50,+,CCCAGTTCTGATTCAGGTAATAGATACAGGTGATGCAGCGCCCATCGCCG,"Exon (Egln2-201/Egln2, exon 3 of 6)",7,27158658,27166802,8145,2,Egln2-201,6457,Cyp2t4-202;Cyp2t4-201;Egln2-201;Egln2-204;Egln2-202,Cyp2t4;Cyp2t4;Egln2;Egln2;Egln2,6582;5214;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,112406,ENSMUSG00000058709,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16940,cg17884754,-0.000000962,0.00000352,-0.273152141,0.784918148,loss,ns,-0.00000197,0.00000599,-0.328692814,0.742609814,neg,ns,0.000487368,0.001753515,0.277937582,0.78124555,pos,ns,0.107212443,-0.0000189,0.0000603,-0.312787914,0.754652114,neg,ns,0.930685996,Tafa5,Tafa5_Intergenic_upstream,15,87507829,87507878,87507829,87507830,50,-,CGTTCATTGCATTACTTGGCATAAACATGATTTTAATAATTACCATGGGC,Distal Intergenic,15,87544299,87759362,215064,1,Tafa5-202,-36470,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,106014,ENSMUSG00000054863,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5160,cg22246953,0.00000221,0.00000388,0.570100603,0.569022402,gain,ns,-0.00000217,0.00000659,-0.328673503,0.742624398,neg,ns,0.00039301,0.001931833,0.203439107,0.83892531,pos,ns,0.076276703,-0.0000854,0.0000664,-1.286026944,0.199393378,neg,ns,0.110689925,Plxna4,Plxna4_fiveUTR,6,32587408,32587457,32587408,32587409,50,-,CGCGTGTGGCTGCCTCCTCCAGCCCCAGCCCCGAACGCAAATACTCCACC,Promoter (<=1kb),6,32144268,32588192,443925,2,Plxna4-201,735,Plxna4-201,Plxna4,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,9,243743,ENSMUSG00000029765,conserved gene and region,6,32587009,32587555,547,*,547,45,0.647166362,0.791377315,0.08226691,1.82E-30,CpGisland,TRUE,U3,Pr-B
21953,cg22189866,0.0000389,0.00000529,7.362302206,1.64E-12,gain,yes,-0.00000295,0.00000898,-0.328521005,0.742739567,neg,ns,0.011089742,0.002631097,4.214873183,0.0000328,pos,ns,4.483854772,0.0000275,0.0000905,0.303775762,0.761502521,pos,ns,0.84863526,Faf1,Faf1_Intron,4,109806599,109806648,109806599,109806600,50,+,CGTAGTGACAGAGCTCAGAGATAAGCCAAGACAGAGCCCTTTTGTGATTG,"Intron (Faf1-201/Faf1, intron 8 of 18)",4,109676588,109963960,287373,1,Faf1-201,130011,Faf1-201,Faf1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,24,14084,ENSMUSG00000010517,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27767,cg10302985,0.0000946,0.0000133,7.121176992,7.50E-12,gain,yes,-0.00000741,0.0000226,-0.328499467,0.742755833,neg,ns,0.024006539,0.006610193,3.631745538,0.000329293,pos,ns,3.482417705,-0.000482792,0.000227324,-2.123804283,0.034478101,neg,ns,0.296572811,Tgfb2,Tgfb2_Intron,1,186682666,186682715,186682714,186682715,50,-,CTGACCATTTAGATTTCAGAGGGATCCAAAACCAATTTAGACTCCAGTCG,"Intron (Tgfb2-201/Tgfb2, intron 1 of 6)",1,186622792,186705989,83198,2,Tgfb2-201,23274,Tgfb2-201;Tgfb2-206,Tgfb2;Tgfb2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,4,21808,ENSMUSG00000039239,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14830,cg19875876,0.000000919,0.00000387,0.237583278,0.812361264,gain,ns,0.00000216,0.00000657,0.32823775,0.742953501,pos,ns,-0.001882183,0.001924281,-0.978122714,0.328776321,neg,ns,0.483099468,0.0000243,0.0000662,0.367305326,0.713641902,pos,ns,0.901410304,Fam172a,Fam172a_Intron,13,77893865,77893914,77893865,77893866,50,+,CGTTGTCAGGCAGAAATGAACACAAATGGATCACTCACATTAACCAGAGG,"Intron (Fam172a-203/Fam172a, intron 6 of 10)",13,77708690,78163655,454966,1,Fam172a-203,185175,Fam172a-203;Fam172a-201;Fam172a-202;Fam172a-209;Fam172a-205;Fam172a-207;Fam172a-208,Fam172a;Fam172a;Fam172a;Fam172a;Fam172a;Fam172a;Fam172a,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,24,68675,ENSMUSG00000064138,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10189,cg07302069,0.0000384,0.00000263,14.56987489,5.44E-37,gain,yes,0.00000147,0.00000447,0.328226675,0.742961866,pos,ns,-0.000613966,0.001310645,-0.468445679,0.639795121,neg,ns,0.193959076,0.000130012,0.0000451,2.88447266,0.004195314,pos,ns,0.052599088,Hoxa7,Hoxa7_fiveUTR,6,52217479,52217528,52217527,52217528,50,+,TTACACCCCCAGATTTACACCAAACCCCATTTTCTTTTGGACGGAGCTCG,Promoter (<=1kb),6,52214498,52217505,3008,2,Hoxa7-201,0,Gm28308-201;Hoxa3-201;Hoxa3-203;Hoxa7-205;Hoxa7-201;Hoxa7-202;Hoxa7-204;Hoxa7-203,Gm28308;Hoxa3;Hoxa3;Hoxa7;Hoxa7;Hoxa7;Hoxa7;Hoxa7,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,9,10,15404,ENSMUSG00000038236,conserved gene and region,6,52217520,52217758,239,*,239,24,0.728033473,0.781045752,0.10041841,1.22E-18,CpGisland,TRUE,U3,Pr-B
21922,cg25300034,-0.00000825,0.00000503,-1.639243886,0.102176874,loss,ns,0.00000281,0.00000855,0.328214358,0.742971169,pos,ns,-0.002356247,0.002504474,-0.940814952,0.347532226,neg,ns,0.459004918,0.0000433,0.0000861,0.502647863,0.61556876,pos,ns,0.894195779,Gm9661,Gm9661_Exon,12,109727371,109727420,109727419,109727420,50,+,TGCTCATGTCGAATCGTACAGGGTCATCCACTTTTTCAGTATCAAGAGCG,"Exon (Mir487b-201/Mir487b-201, exon 1 of 1)",12,109827003,109828124,1122,1,Gm9661-201,-99583,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,8,675987,NA,mapped to different genes,12,109727244,109727446,203,*,203,12,0.556650246,0.770398482,0.059113301,0.000000684,CpGisland,TRUE,NA,NRS
26491,cg22724078,0.00000518,0.0000108,0.478710758,0.632481874,gain,ns,-0.00000604,0.0000184,-0.328113904,0.743047045,neg,ns,-0.004932485,0.005390245,-0.915076189,0.360862866,neg,ns,0.442657806,0.000145344,0.00018537,0.784072086,0.433596499,pos,ns,0.250632077,Casz1,Casz1_Promoter,4,148795046,148795095,148795094,148795095,50,+,GTTGTGAATGAACAGCGAGGTGAAATAGTATTTCATAATCACCCCATTCG,Promoter (9-10kb),4,148804429,148945129,140701,1,Casz1-201,-9334,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1325,cg03951173,0.000000668,0.000000639,1.046335992,0.296221085,gain,ns,-0.000000356,0.00000109,-0.328055707,0.743091003,neg,ns,0.000189548,0.000317898,0.596253189,0.551441225,pos,ns,0.25850077,-0.0000093,0.0000109,-0.850787416,0.395544122,neg,ns,0.016880445,Fezf2,Fezf2_Intron,14,12346164,12346213,12346212,12346213,50,-,GAACACGCGCAAATGATAATTACCTCATTAGGATGTGGCGCATGGACGCG,"Intron (Fezf2-202/Fezf2, intron 2 of 5)",14,12343388,12348189,4802,2,Fezf2-202,1976,Fezf2-203;Fezf2-201;Fezf2-202,Fezf2;Fezf2;Fezf2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,45,54713,ENSMUSG00000021743,conserved gene but different region,14,12346017,12346222,206,*,206,21,0.611650485,1.094358715,0.101941748,1.67E-16,CpGisland,TRUE,U13,Hc-P
26268,cg20570127,0.000000266,0.00000256,0.104123665,0.917138543,gain,ns,-0.00000143,0.00000435,-0.328050569,0.743094885,neg,ns,0.00015287,0.001273003,0.120086373,0.904492516,pos,ns,0.043595022,0.0000629,0.0000438,1.436392642,0.151899032,pos,ns,0.943625487,Cfap61,Cfap61_Intron,2,145971807,145971856,145971855,145971856,50,-,TGTGAACCAAGATGGATGCCAATTTTCCCTGCCGAGAGTCAGGCTGGCCG,"Intron (Cfap61-204/Cfap61, intron 7 of 15)",2,145934784,146043073,108290,1,Cfap61-204,37023,Cfap61-204;Cfap61-206,Cfap61;Cfap61,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,13,78774,ENSMUSG00000037143,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18748,cg08427764,0.00000405,0.00000801,0.506032198,0.613193702,gain,ns,0.00000446,0.0000136,0.32802402,0.743114938,pos,ns,0.002456352,0.003986324,0.616194774,0.538218173,pos,ns,0.269041642,-0.0000672,0.000137089,-0.490197493,0.624340907,neg,ns,0.823945122,Paqr3,Paqr3_Intergenic_upstream,5,97167680,97167729,97167680,97167681,50,-,CGCCATGATGAGAGGTTCATCTCTGGCTGAGGGTAATGGCCTTAAAAGTC,Distal Intergenic,5,97082329,97111596,29268,2,Paqr3-201,-56133,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,3,231474,ENSMUSG00000055725,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13462,cg04802034,0.00000123,0.00000224,0.548309223,0.583874226,gain,ns,-0.00000125,0.0000038,-0.327895805,0.743211789,neg,ns,0.005590468,0.001112649,5.024466038,0.000000854,pos,ns,6.068324314,-0.000159172,0.0000383,-4.159858819,0.0000413,neg,ns,0.932043079,Xpo7,Xpo7_threeUTR,14,70664564,70664613,70664612,70664613,50,-,GGTCACAATGCTTACACTGTATGCAGCAAACACCCTTACAAGTCTATCCG,3' UTR,14,70654246,70766628,112383,2,Xpo7-202,102015,Xpo7-202;Xpo7-201;Xpo7-206;Xpo7-203,Xpo7;Xpo7;Xpo7;Xpo7,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,13,65246,ENSMUSG00000022100,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4067,cg06591950,-0.0000796,0.000016,-4.987501467,0.00000102,loss,yes,0.00000888,0.0000271,0.327709354,0.743352636,pos,ns,-0.017548486,0.007938795,-2.210472215,0.027802436,neg,ns,1.555917153,0.000303679,0.000273015,1.112318893,0.266862901,pos,ns,0.726026239,Gm45647,Gm45647_Intergenic_upstream,8,26689981,26690030,26690029,26690030,50,+,CTAAATCCCCTTTCGGTAGTATATCTCTCTTCTGTCAGTTCTCCCCAGCG,Distal Intergenic,8,26780315,26780509,195,1,Gm45647-201,-90285,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,46,62,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17887,cg05362516,0.0000673,0.00000765,8.798923352,9.84E-17,gain,yes,-0.00000426,0.000013,-0.327646376,0.743400213,neg,ns,0.000520331,0.003809022,0.136604773,0.891431875,pos,ns,0.049911841,0.0000114,0.000130992,0.087408068,0.93040359,pos,ns,0.105535081,Irx5,Irx5_fiveUTR,8,92358162,92358211,92358162,92358163,50,+,CGCCCCATGCCCGTGTGTGGCCATGTCCTATCCGCAGGGCTACTTGTACC,Promoter (<=1kb),8,92357625,92376286,18662,1,Irx5-202,537,Irx5-202;Irx5-201,Irx5;Irx5,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,30,54352,ENSMUSG00000031737,conserved gene and region,8,92357917,92358556,640,*,640,85,0.746875,0.952631118,0.1328125,2.51E-76,CpGisland,TRUE,U3,Pr-B
17766,cg02292859,-0.0000107,0.00000383,-2.799327633,0.005441961,loss,ns,0.00000213,0.00000651,0.327571878,0.743456493,pos,ns,0.000369042,0.001907622,0.193456453,0.8467282,pos,ns,0.072255976,-0.00015201,0.0000656,-2.317122509,0.021148353,neg,ns,0.929652856,Son,Son_Exon,16,91657340,91657389,91657340,91657341,50,-,CGTTCTATGATGATGTCCTATGCTGCAGAACGTTCCATGATGTCATCTTA,"Exon (Son-203/Son, exon 3 of 12)",16,91647506,91679207,31702,1,Son-203,9834,Son-203;Son-204;Son-202;Son-208;Son-201;Son-205;Son-212,Son;Son;Son;Son;Son;Son;Son,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,31,20658,ENSMUSG00000022961,conserved gene and region,16,91657340,91657713,374,*,374,19,0.483957219,0.867855398,0.050802139,1.77E-09,CpGisland,TRUE,U10,Tr-S
3204,cg20647467,0.0000643,0.00000817,7.865826137,6.15E-14,gain,yes,-0.00000455,0.0000139,-0.327515578,0.743499027,neg,ns,0.00823575,0.004065828,2.025602426,0.043661947,pos,ns,1.359896902,-0.000138022,0.000139823,-0.987114675,0.324356237,neg,ns,0.080020527,Fezf1,Fezf1_fiveUTR,6,23248233,23248282,23248281,23248282,50,+,AATGGACTCCTGCCAGCCCATCGCAGAGTTCTTGGCGCACCAATGACTCG,Promoter (<=1kb),6,23245044,23248362,3319,2,Fezf1-201,80,Fezf1-201,Fezf1,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,7,73191,ENSMUSG00000029697,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4500,cg20901180,0.00000703,0.00000191,3.676535357,0.000278567,gain,ns,0.00000106,0.00000325,0.327491294,0.743517373,pos,ns,0.001218595,0.000951504,1.280704616,0.20125478,pos,ns,0.696253795,-0.0000167,0.0000327,-0.509212945,0.610965231,neg,ns,0.076934389,Ntng2,Ntng2_fiveUTR,2,29252975,29253024,29252975,29252976,50,+,CGGTCTGATCCGGGCTGCGTAACTTCCTCTGTGTGGCTTTAACACACCAT,Promoter (<=1kb),2,29203822,29253005,49184,2,Ntng2-202,0,Ntng2-211;Ntng2-210;Ntng2-201;Ntng2-203;Ntng2-204;Ntng2-202;Ntng2-209,Ntng2;Ntng2;Ntng2;Ntng2;Ntng2;Ntng2;Ntng2,-4850;-4876;-4935;-4935;-4935;0;-4843,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,2,171171,ENSMUSG00000035513,conserved gene and region,2,29252785,29253279,495,*,495,46,0.688888889,0.784090909,0.092929293,1.20E-33,CpGisland,TRUE,U3,Pr-B
5658,cg05019982,-0.0000656,0.00000837,-7.837893739,7.41E-14,loss,yes,0.00000465,0.0000142,0.327406505,0.743581432,pos,ns,-0.007867072,0.004163912,-1.889346418,0.059778482,neg,ns,1.223455121,0.000253602,0.000143197,1.771003603,0.077542667,pos,ns,0.862180278,Kirrel3,Kirrel3_Intron,9,34520482,34520531,34520530,34520531,50,-,TTAGCATTTATATGTGCCCCATTTCATCTGTAATCTGCTTTTACAAGGCG,"Intron (Kirrel3-202/Kirrel3, intron 2 of 16)",9,34486126,35035280,549155,1,Kirrel3-202,34356,Kirrel3-202;Kirrel3-206;Kirrel3-209;Kirrel3-201;Kirrel3-208;Kirrel3-205,Kirrel3;Kirrel3;Kirrel3;Kirrel3;Kirrel3;Kirrel3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,21,67703,ENSMUSG00000032036,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15793,cg05088060,-0.00000459,0.00000604,-0.760060779,0.447795901,loss,ns,-0.00000336,0.0000103,-0.327370117,0.743608923,neg,ns,-0.006062943,0.003007363,-2.016032809,0.044658895,neg,ns,1.350092026,-0.0000784,0.000103423,-0.757839052,0.449123037,neg,ns,0.828757436,Mef2c,Mef2c_Intergenic_upstream,13,83484885,83484934,83484885,83484886,50,-,CGATAATGCCATGACTCCGTGTTATTGCGCATTTCTGGGCTGAAAAGATA,Distal Intergenic,13,83504034,83663343,159310,1,Mef2c-218,-19149,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,41,17260,ENSMUSG00000005583,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4133,cg26416385,-0.00000724,0.00000465,-1.556501214,0.120609241,loss,ns,0.00000259,0.00000791,0.327338114,0.743633103,pos,ns,-0.001784854,0.002316525,-0.770487672,0.441597453,neg,ns,0.35497344,0.000117298,0.0000797,1.472392138,0.141929529,pos,ns,0.90308052,Gm18089,Gm18089_Intergenic_upstream,18,26949686,26949735,26949686,26949687,50,-,CGGTAGACTTGATCTTAATCACAAGCCTGATTTGGCACAGTAGGTCCTGG,Distal Intergenic,18,27008674,27009328,655,1,Gm18089-201,-58988,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,5,100416384,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
233,cg21063210,-6.30E-09,0.000000284,-0.02216501,0.982330588,loss,ns,-0.000000158,0.000000483,-0.327259791,0.743692278,neg,ns,-0.000356914,0.000141497,-2.522413233,0.012155667,neg,ns,1.91522121,0.00000922,0.00000487,1.894716057,0.059060427,pos,ns,0.992707954,Gm21992,Gm21992_threeUTR,19,4801732,4801781,4801780,4801781,50,-,GGCGGAACGAAAGCTGCGACTCTGATAAACGGCGGTAATCAGAGAGCTCG,3' UTR,19,4742913,4811612,68700,2,Gm21992-203,9831,Gm21992-203;Gm21992-206;Gm21992-204;Gm21992-201;Gm21992-205;Gm21992-202;Rbm14-201;Rbm14-202;Rbm14-203,Gm21992;Gm21992;Gm21992;Gm21992;Gm21992;Gm21992;Rbm14;Rbm14;Rbm14,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,21,48,102902673,ENSMUSG00000096370,mapped to different genes,19,4801605,4801812,208,*,208,24,0.586538462,1.371428571,0.115384615,3.42E-20,CpGisland,TRUE,U10,Tr-S
10661,cg05202498,-0.0000133,0.00000658,-2.021788776,0.04405696,loss,ns,-0.00000366,0.0000112,-0.327234198,0.743711615,neg,ns,-0.010483025,0.003276478,-3.199479939,0.001519267,neg,ns,2.81836586,0.000281653,0.000112678,2.49962736,0.012949095,pos,ns,0.889551591,Zfp608,Zfp608_threeUTR,18,54897177,54897226,54897177,54897178,50,-,CGAGGTTGGGTCTACACCTGTCTGCTTCATAGAGTCCATGACAGACTTCA,3' UTR,18,54888048,54990166,102119,2,Zfp608-201,92940,Zfp608-201;Zfp608-204;Zfp608-203;Zfp608-202,Zfp608;Zfp608;Zfp608;Zfp608,0;0;0;-1615,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,32,269023,ENSMUSG00000052713,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8950,cg21577058,0.00000858,0.00000202,4.24991161,0.0000283,gain,ns,-0.00000112,0.00000343,-0.327096679,0.743815521,neg,ns,0.000870554,0.001005326,0.865941683,0.38719182,pos,ns,0.412073826,-0.000031,0.0000346,-0.898076529,0.369841727,neg,ns,0.040952967,Bmp4,Bmp4_Intron,14,46386284,46386333,46386284,46386285,50,+,CGGCCTGAAAGTAAGAATTGCCCTGTAATTACTTGGTCTAACTTGTTTAC,"Intron (Bmp4-201/Bmp4, intron 2 of 3)",14,46383520,46390669,7150,2,Bmp4-201,4336,Bmp4-201;Bmp4-202;Bmp4-204;Bmp4-203;Gm15217-202;Gm15217-201;Gm15217-203,Bmp4;Bmp4;Bmp4;Bmp4;Gm15217;Gm15217;Gm15217,0;0;0;4202;6870;6817;5157,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,8,12159,ENSMUSG00000021835,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
1139,cg01022378,0.0000329,0.0000131,2.517593107,0.012319804,gain,ns,0.00000727,0.0000222,0.327092474,0.743818698,pos,ns,0.005326636,0.006509657,0.818266813,0.413833375,pos,ns,0.383174487,-0.000493608,0.000223867,-2.204921529,0.02819366,neg,ns,0.724077297,Rpl23a-ps13,Rpl23a-ps13_Intergenic_upstream,X,11797953,11798002,11797953,11797954,50,+,CGAAAGCTTTGCTCAGTGAGTTTAAACAGCATCTCACAGCATGGCCGAGC,Distal Intergenic,20,11867265,11867705,441,1,Rpl23a-ps13-201,-69263,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,13,14,628338,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
20304,cg26414654,0.0000487,0.0000111,4.384888556,0.0000159,gain,ns,0.00000617,0.0000189,0.327008289,0.743882309,pos,ns,0.012158836,0.005525806,2.200373228,0.028517778,pos,ns,1.544884313,-0.000153414,0.000190032,-0.807307479,0.420108339,neg,ns,0.252871737,Dcakd,Dcakd_Intergenic_downstream,11,102991943,102991992,102991943,102991944,50,-,CGCCCGACTTGTTCTATCGACATGCTGGTTAGCTGGAAATTGTATTGGAA,Distal Intergenic,11,102994049,102997548,3500,2,Dcakd-203,5605,Dcakd-201;Dcakd-203,Dcakd;Dcakd,0;5556,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,4,68087,ENSMUSG00000020935,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
8643,cg13897126,0.000089,0.0000161,5.520007866,7.17E-08,gain,yes,-0.00000895,0.0000274,-0.326951338,0.743925341,neg,ns,0.024131445,0.008021111,3.00849148,0.002840696,pos,ns,2.546575205,-0.000233189,0.000275845,-0.84535968,0.398562041,neg,ns,0.49397693,Btrc,Btrc_Intron,19,45476358,45476407,45476406,45476407,50,+,CACTCCGCATAATGTAACAATTTCCCAATAAACTCTGACTTGTAATAACG,"Intron (Btrc-204/Btrc, intron 1 of 2)",19,45363734,45507736,144003,1,Btrc-204,112624,Btrc-204;Btrc-201;Btrc-210;Btrc-202;Btrc-203;Btrc-209,Btrc;Btrc;Btrc;Btrc;Btrc;Btrc,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,63,98,12234,ENSMUSG00000025217,conserved gene and region,19,45476406,45476490,85,*,85,8,0.623529412,1.011904762,0.094117647,0.00000348,CpGisland,TRUE,NA,NRS
17518,cg03983243,-0.000000163,0.0000111,-0.014670187,0.988304741,loss,ns,-0.00000616,0.0000189,-0.326783517,0.744052155,neg,ns,-0.008684361,0.005525005,-1.571828703,0.117010336,neg,ns,0.931775774,0.000130516,0.000190004,0.686912018,0.492651696,pos,ns,0.592994596,Gm2497,Gm2497_Intergenic_downstream,9,90693384,90693433,90693432,90693433,50,-,AAAGAATTCCTGAACCTTCGTTGTTAGGGCAAGTGCTACCATCTGAGACG,Distal Intergenic,9,90732924,90733524,601,2,Gm2497-201,40140,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,9,100039925,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11284,cg26650303,0.00000733,0.00000245,2.986783234,0.0030442,gain,ns,-0.00000136,0.00000417,-0.326782285,0.744053086,neg,ns,-0.0003107,0.001221512,-0.254356706,0.799388633,neg,ns,0.097242032,0.0000626,0.000042,1.490070662,0.137222379,pos,ns,0.06405533,Hand2,Hand2_Exon,8,57320933,57320982,57320933,57320934,50,+,CGTGAGGAGCCTCTGACGACATATATTAACCCGAGCGGCCCTAAAGATGT,Promoter (<=1kb),8,57320983,57324633,3651,1,Hand2-201,-1,Hand2-201,Hand2,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,9,15111,ENSMUSG00000038193,mapped to different genes,8,57320856,57320969,114,*,114,14,0.587719298,1.422459893,0.122807018,2.66E-12,CpGisland,TRUE,U3,Pr-B
15070,cg04063568,-0.00000136,0.00000165,-0.821115789,0.412211317,loss,ns,-0.000000916,0.0000028,-0.326633904,0.744165215,neg,ns,0.000447835,0.000821333,0.545253892,0.58597099,pos,ns,0.232123885,-0.0000098,0.0000282,-0.346900434,0.728901489,neg,ns,0.967414028,Setbp1,Setbp1_Exon,18,78857407,78857456,78857455,78857456,50,-,TTTGCAGGCCTACCACGCTTCTTCTTTGACTTCAAGTCTGAAGTCCTACG,"Exon (Setbp1-201/Setbp1, exon 4 of 6)",18,78750380,79109391,359012,2,Setbp1-201,251935,Setbp1-201,Setbp1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,9,240427,ENSMUSG00000024548,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24828,cg05484808,-0.0000199,0.00000415,-4.799636245,0.00000248,loss,ns,0.0000023,0.00000705,0.326539649,0.744236445,pos,ns,-0.002924728,0.00206433,-1.416792484,0.157547741,neg,ns,0.802587819,0.0000312,0.000071,0.43986191,0.660343624,pos,ns,0.940502258,Phc2,Phc2_Exon,4,128745012,128745061,128745012,128745013,50,-,CGTCCCTGCTGGTGGGGAATCTCAAGAAGAAGTATGCACAGGGGTTCCTG,"Exon (Phc2-201/Phc2, exon 11 of 15)",4,128654702,128752881,98180,1,Phc2-201,90310,Phc2-201;Phc2-203;Phc2-209;Phc2-202;Phc2-208;Phc2-205;Phc2-210;Phc2-204;Phc2-206,Phc2;Phc2;Phc2;Phc2;Phc2;Phc2;Phc2;Phc2;Phc2,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,Exon,9,13,54383,ENSMUSG00000028796,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26014,cg26187138,-0.0000701,0.000011,-6.352464517,7.54E-10,loss,yes,0.00000612,0.0000187,0.326534897,0.744240037,pos,ns,-0.013586932,0.005489875,-2.474907194,0.01386164,neg,ns,1.858185398,0.000242553,0.000188796,1.284731167,0.199845388,pos,ns,0.830475631,C2cd5,C2cd5_Exon,6,143073658,143073707,143073658,143073659,50,-,CGTACCAGTATAGATGAGAGTGGGAACAGACACAGAGAAGTTCTGAGTAA,"Exon (C2cd5-201/C2cd5, exon 8 of 25)",6,143010920,143100107,89188,2,C2cd5-201,26400,C2cd5-201;C2cd5-203;C2cd5-217;C2cd5-202;C2cd5-213;C2cd5-204;C2cd5-207;C2cd5-205;C2cd5-214;C2cd5-210;C2cd5-206;C2cd5-209,C2cd5;C2cd5;C2cd5;C2cd5;C2cd5;C2cd5;C2cd5;C2cd5;C2cd5;C2cd5;C2cd5;C2cd5,0;0;0;0;0;0;0;0;0;0;6270;26434,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,8,74741,ENSMUSG00000030279,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26793,cg18851644,-0.00000588,0.00000279,-2.104056988,0.036178593,loss,ns,-0.00000155,0.00000475,-0.326338352,0.744388576,neg,ns,-0.001203125,0.001391068,-0.864892805,0.387766406,neg,ns,0.411429818,-0.0000756,0.0000478,-1.581145813,0.114864421,neg,ns,0.936990228,Usp33,Usp33_threeUTR,3,152360322,152360371,152360322,152360323,50,-,CGAGTATGGTGTTATGCTTGCAGCAAAGAAGTATTTTTGGATAGGAAATT,3' UTR,3,152346478,152393333,46856,1,Usp33-202,13844,Usp33-202;Usp33-201;Usp33-209;Usp33-203;Usp33-205;Usp33-204;Usp33-206,Usp33;Usp33;Usp33;Usp33;Usp33;Usp33;Usp33,0;0;0;0;13807;-1527;-3530,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,2,170822,ENSMUSG00000025437,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17936,cg14477590,-0.000000902,0.000000546,-1.652521326,0.09944073,loss,ns,-0.000000303,0.000000927,-0.326263,0.744445526,neg,ns,0.000134165,0.000271691,0.493812929,0.62178799,pos,ns,0.206357671,-0.00000997,0.00000934,-1.06686085,0.28686482,neg,ns,0.013386146,Pcf11,Pcf11_Exon,7,92669422,92669471,92669470,92669471,50,+,TAAAAACCTTGGCGGTTTGGGCCTCGATGAGAGAGACGATCTCCTTGGCG,Promoter (<=1kb),7,92643543,92669934,26392,2,Pcf11-201,463,Pcf11-201;Pcf11-205;Pcf11-204,Pcf11;Pcf11;Pcf11,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,8,74737,ENSMUSG00000041328,conserved gene and region,7,92669413,92670159,747,*,747,79,0.654618474,0.987863671,0.105756359,4.14E-62,CpGisland,TRUE,U1,Pr-A
17487,cg18776124,-0.00000104,0.00000268,-0.388993144,0.697548272,loss,ns,0.00000149,0.00000456,0.326196672,0.744495657,pos,ns,0.006387545,0.001335192,4.78398877,0.00000266,pos,ns,5.57474583,-0.000167387,0.0000459,-3.645416863,0.000312956,neg,ns,0.065487603,Dlg2,Dlg2_Exon,7,90477023,90477072,90477023,90477024,50,-,CGAAGAGATGGCATGATGTGAATGACTCCAGTGTGAAGAAATCTGCTTCG,Promoter (<=1kb),7,90476672,90479068,2397,1,Dlg2-211,351,Dlg2-211;Dlg2-215;Dlg2-216;Dlg2-217;Tmem126b-201;Tmem126b-202,Dlg2;Dlg2;Dlg2;Dlg2;Tmem126b;Tmem126b,0;0;-100;0;-1022;-1028,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,21,23859,ENSMUSG00000052572,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2342,cg07643478,-0.0000165,0.0000102,-1.612990388,0.107764084,loss,ns,0.00000567,0.0000174,0.326182026,0.744506727,pos,ns,-0.007107159,0.005090473,-1.396168568,0.163662708,neg,ns,0.786050268,0.000263122,0.000175061,1.503028398,0.133849724,pos,ns,0.418213571,Six5,Six5_fiveUTR,7,19094611,19094660,19094659,19094660,50,+,GGAGGAACTTCCCAAAGTTGCAAAACATGGCTACCTTGCCTGCGGAGCCG,Promoter (<=1kb),7,19094594,19098549,3956,1,Six5-201,17,Dmpk-201;Dmpk-218;Dmpk-202;Dmpk-203;Dmpk-219;Dmpk-208;Dmpk-209;Dmpk-211;Dmpk-206;Dmpk-207;Dmpk-212;Dmpk-214;Dmpk-205;Dmpk-210;Gm4969-202;Six5-201,Dmpk;Dmpk;Dmpk;Dmpk;Dmpk;Dmpk;Dmpk;Dmpk;Dmpk;Dmpk;Dmpk;Dmpk;Dmpk;Dmpk;Gm4969;Six5,0;0;0;0;0;0;0;0;7000;0;0;0;0;0;23708;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,1,20475,ENSMUSG00000040841,mapped to different genes,7,19094647,19095521,875,*,875,109,0.714285714,0.977202869,0.124571429,3.54E-94,CpGisland,TRUE,NA,NRS
25109,cg27379399,0.0000628,0.0000112,5.621726846,4.22E-08,gain,yes,-0.00000619,0.000019,-0.32614225,0.74453679,neg,ns,0.022246259,0.005557885,4.00264819,0.0000784,pos,ns,4.105539038,-0.000404366,0.000191135,-2.115603268,0.035175797,neg,ns,0.054369108,Ahdc1,Ahdc1_Intron,4,133012912,133012961,133012912,133012913,50,-,CGTGCCCGGTTACCTGGCGAACAAAGTCGGCTCACTTTTGCATAAATAAA,"Intron (Ahdc1-210/Ahdc1, intron 2 of 3)",4,133011260,133060820,49561,1,Ahdc1-210,1652,Ahdc1-210;Ahdc1-203;Ahdc1-204;Ahdc1-205;Ahdc1-207;Ahdc1-211;Ahdc1-209;Ahdc1-206;Ahdc1-201,Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,35,49,230793,ENSMUSG00000037692,conserved gene but different region,4,133012811,133013009,199,*,199,14,0.577889447,0.928666667,0.070351759,6.46E-09,CpGisland,TRUE,NA,NRS
349,cg06037672,0.0000136,0.0000149,0.916330691,0.360205753,gain,ns,-0.00000824,0.0000253,-0.326032211,0.744619962,neg,ns,0.001305363,0.007404889,0.176283897,0.860186018,pos,ns,0.065407621,0.000218446,0.000254654,0.857817183,0.391656133,pos,ns,0.43316735,Zfhx4,Zfhx4_fiveUTR,3,5221563,5221612,5221611,5221612,50,+,GCCGCTGCCTTTTCGGGTGTTGCTTAGATTAAGGCTGAGACTTGGCTGCG,5' UTR,3,5218526,5413165,194640,1,Zfhx4-203,3037,Zfhx4-203;Zfhx4-202;Zfhx4-201;Zfhx4-204,Zfhx4;Zfhx4;Zfhx4;Zfhx4,0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,10,77,80892,ENSMUSG00000025255,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
27356,cg19159869,0.00003,0.0000183,1.636514401,0.102746744,gain,ns,-0.0000102,0.0000311,-0.325906579,0.744714923,neg,ns,0.001423972,0.009124477,0.156060697,0.876086755,pos,ns,0.057452885,0.000106595,0.00031379,0.339702761,0.734310419,pos,ns,0.322061554,Cdh22,Cdh22_Promoter,2,165242936,165242985,165242936,165242937,50,+,CGTTTGAAGCAAAGCAAACATGCGGCCTATTTATGTATCTATAGAGAATT,Promoter (8-9kb),2,165111507,165234853,123347,2,Cdh22-201,-8083,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,7,23,104010,ENSMUSG00000053166,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
6166,cg26335874,0.00000668,0.00000706,0.946678274,0.344540072,gain,ns,-0.00000391,0.000012,-0.325874884,0.744738881,neg,ns,0.004962655,0.003514298,1.41213276,0.158913903,pos,ns,0.798838107,-0.0000811,0.000120856,-0.671379948,0.502478484,neg,ns,0.450397801,Ptgs1,Ptgs1_Intron,2,36203300,36203349,36203300,36203301,50,+,CGCGCCAGCCCAATCTCGCCTCCTATATTCAGAGTTGATTAGACGCTATT,"Intron (Gm13429-201/Gm13429-201, intron 1 of 1)",2,36230426,36252272,21847,1,Ptgs1-201,-27077,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,5,19224,ENSMUSG00000047250,conserved gene but different region,2,36203039,36203344,306,*,306,27,0.640522876,0.862511744,0.088235294,2.41E-19,CpGisland,TRUE,U3,Pr-B
750,cg08496775,0.0000255,0.00000811,3.150673452,0.001787953,gain,ns,0.00000449,0.0000138,0.325859701,0.744750358,pos,ns,0.008278338,0.004034991,2.05163724,0.041044796,pos,ns,1.386741902,-0.000177189,0.000138763,-1.276915059,0.202587861,neg,ns,0.163147005,Stmn2,Stmn2_fiveUTR,3,8509353,8509402,8509401,8509402,50,+,CAGCACCATTGGCCGATCAATATTTAATGCTTGGAGATTCTGACTCTGCG,Promoter (<=1kb),3,8509360,8561606,52247,1,Stmn2-201,0,Stmn2-201;Stmn2-202;Stmn2-204,Stmn2;Stmn2;Stmn2,0;-113;-184,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,1,20257,ENSMUSG00000027500,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
15809,cg25323435,-0.00000629,0.00000584,-1.077802989,0.281959654,loss,ns,-0.00000323,0.00000992,-0.325845644,0.744760984,neg,ns,0.001234485,0.002905313,0.424906161,0.671199854,pos,ns,0.173148147,0.00012433,0.0000999,1.244372066,0.214302657,pos,ns,0.131785116,Mef2c,Mef2c_fiveUTR,13,83524252,83524301,83524300,83524301,50,+,TAGTCCCGCCCCCCTTTTGCAAGAGTGAAACTGATGATTTCTCCAGCTCG,Promoter (<=1kb),13,83524291,83633135,108845,1,Mef2c-231,0,Mef2c-218;Mef2c-228;Mef2c-221;Mef2c-229;Mef2c-201;Mef2c-202;Mef2c-207;Mef2c-231;Mef2c-222;Mef2c-223;Mef2c-209;Mef2c-227;Mef2c-217;Mef2c-213;Mef2c-214;Mef2c-215;Mef2c-226,Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,9,41,17260,ENSMUSG00000005583,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
19493,cg16477041,-0.0000525,0.000012,-4.366506108,0.0000172,loss,ns,-0.00000665,0.0000204,-0.325795124,0.744799172,neg,ns,-0.006213869,0.00598027,-1.039061755,0.299585761,neg,ns,0.523478833,-0.000269368,0.000205661,-1.309767757,0.19124421,neg,ns,0.782099163,Gm12684,Gm12684_Intergenic_upstream,4,99444842,99444891,99444890,99444891,50,-,ATTATAATGCATGGATATAACTTATAACATGAATCAATGTCATCAAGACG,Distal Intergenic,4,99430256,99431254,999,2,Gm12684-201,-13637,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,8,665212,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21192,cg04824142,0.000140266,0.0000166,8.429991838,1.32E-15,gain,yes,-0.00000921,0.0000283,-0.325702429,0.744869242,neg,ns,0.014705,0.008281365,1.775673446,0.07676772,pos,ns,1.114821358,-0.000269522,0.000284795,-0.946371977,0.34469597,neg,ns,0.055261116,Mpped2,Mpped2_Promoter,2,106693908,106693957,106693956,106693957,50,+,ATGCACACACAAAGCGGAGCCCGGGTGAGAGGTGCCTTGTCAGAGGCGCG,Promoter (<=1kb),2,106693269,106868356,175088,1,Mpped2-202,639,Mpped2-202;Mpped2-206;Mpped2-201;Mpped2-203;Mpped2-204,Mpped2;Mpped2;Mpped2;Mpped2;Mpped2,0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,2,33,77015,ENSMUSG00000016386,conserved gene and region,2,106693498,106694592,1095,*,1095,121,0.722374429,0.847642505,0.110502283,2.54E-97,CpGisland,TRUE,U3,Pr-B
1576,cg04905851,-0.0000159,0.00000763,-2.091265973,0.037317988,loss,ns,-0.00000422,0.000013,-0.3256767,0.744888691,neg,ns,-0.000820996,0.003795373,-0.216314969,0.828884515,neg,ns,0.081505974,-0.00017793,0.000130523,-1.363210903,0.17380531,neg,ns,0.846407054,Zfp521,Zfp521_Intron,18,13786096,13786145,13786096,13786097,50,+,CGAAATGTAATGCCTGAGCAGCTGAAATCATTTGGTACTCTCAATCCCCC,"Intron (Zfp521-201/Zfp521, intron 5 of 7)",18,13687013,13972787,285775,2,Zfp521-201,186642,Zfp521-201;Zfp521-205;Zfp521-204,Zfp521;Zfp521;Zfp521,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,81,225207,ENSMUSG00000024420,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3112,cg12576944,0.00000859,0.0000122,0.701646783,0.48342588,gain,ns,-0.00000677,0.0000208,-0.325641716,0.744915137,neg,ns,0.025772546,0.006090267,4.231759655,0.0000306,pos,ns,4.514629603,-0.000695094,0.000209444,-3.318760644,0.001011918,neg,ns,0.238861681,Lrmda,Lrmda_Intron,14,22783451,22783500,22783451,22783452,50,-,CGATCCATAGCCTGCCAGAGAGGCGCTGGTGGAGGTCTATGATAACAAAG,"Intron (Lrmda-201/Lrmda, intron 5 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,763739,Lrmda-201;Lrmda-204;Lrmda-206,Lrmda;Lrmda;Lrmda,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23754,cg22236505,0.0000103,0.00000408,2.534164425,0.011763644,gain,ns,-0.00000226,0.00000694,-0.325623139,0.744929181,neg,ns,-0.000891782,0.002032109,-0.438845413,0.661079251,neg,ns,0.179746474,0.0000207,0.0000699,0.296244432,0.76724178,pos,ns,0.721718409,Foxo6,Foxo6_Intron,4,120274013,120274062,120274061,120274062,50,+,TATCCAGCAAGTACAACCTCATTTGCTAACAGCACTCCATTCACCTGACG,"Intron (Foxo6-201/Foxo6, intron 1 of 1)",4,120267079,120287349,20271,2,Foxo6-201,13287,Foxo6-201,Foxo6,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,14,42,329934,ENSMUSG00000052135,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15909,cg24517026,0.00000766,0.00000208,3.683413809,0.000271462,gain,ns,0.00000115,0.00000353,0.325455368,0.745056011,pos,ns,0.004101382,0.001035583,3.960457635,0.0000929,pos,ns,4.032206309,-0.00013193,0.0000356,-3.704472581,0.000250756,neg,ns,0.053287662,Haao,Haao_Intergenic_upstream,17,83861967,83862016,83861967,83861968,50,+,CGCGCGGTACTTATACAGCAGTACATGCAGAGCAATGCCGAGGTTGTGAG,Distal Intergenic,17,83837173,83847963,10791,2,Haao-205,-14004,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,6,107766,ENSMUSG00000000673,conserved gene and region,17,83861543,83862038,496,*,496,56,0.697580645,0.928094093,0.112903226,5.89E-46,CpGisland,TRUE,U2,Pr-W
6013,cg20869185,0.0000237,0.00000479,4.942921578,0.00000126,gain,yes,-0.00000265,0.00000814,-0.325436238,0.745070474,neg,ns,-0.002115928,0.002385371,-0.887043512,0.375743126,neg,ns,0.425108956,0.0000602,0.000082,0.733812811,0.463617445,pos,ns,0.832761008,Cxxc5,Cxxc5_Intron,18,35855596,35855645,35855644,35855645,50,-,CCTGCATGGACAAAGGGGTCCTTTGTGGGCTGACCGCGGCTGGCGGGGCG,"Intron (Gm50371-201/Gm50371-201, intron 4 of 4)",18,35829397,35859002,29606,1,Cxxc5-202,26199,Cxxc5-202;Cxxc5-201;Cxxc5-206;Cxxc5-203;Cxxc5-204;Cxxc5-205,Cxxc5;Cxxc5;Cxxc5;Cxxc5;Cxxc5;Cxxc5,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,49,67393,ENSMUSG00000046668,conserved gene and region,18,35855560,35855824,265,*,265,22,0.671698113,0.73685541,0.083018868,2.89E-15,CpGisland,TRUE,U8,En-Pd
9571,cg08120263,0.000122859,0.0000177,6.949657645,2.17E-11,gain,yes,0.00000977,0.00003,0.325369735,0.74512075,pos,ns,0.010233157,0.008798751,1.163023808,0.245714311,pos,ns,0.609569548,0.000116075,0.000302588,0.383608277,0.701531756,pos,ns,0.205618361,Foxg1,Foxg1_fiveUTR,12,49383922,49383971,49383970,49383971,50,+,CTAGTGTGCGCCTGTAGCTCGGAAAATTAATTGTGGCTATAGCCGCCTCG,5' UTR,12,49382660,49384364,1705,1,Foxg1-202,1262,Foxg1-202;Foxg1-203;Foxg1-204;Foxg1-201;Gm43517-201,Foxg1;Foxg1;Foxg1;Foxg1;Gm43517,0;1122;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,27,15228,ENSMUSG00000020950,conserved gene and region,12,49383930,49384150,221,*,221,29,0.737556561,0.967834491,0.13122172,3.87E-26,CpGisland,TRUE,U3,Pr-B
8335,cg16360046,-0.000013,0.00000488,-2.668269828,0.008025325,loss,ns,0.00000269,0.00000828,0.325302344,0.745171699,pos,ns,0.001243131,0.002426711,0.512270128,0.608826738,pos,ns,0.215506283,0.000149779,0.0000835,1.794745007,0.073668444,pos,ns,0.919778719,Zeb2,Zeb2_Intron,2,45024606,45024655,45024654,45024655,50,+,TGCTCATAATATGATCTTTGTATAATCCGCGGGTCTGCACTTGCCTTCCG,"Intron (Zeb2-212/Zeb2, intron 3 of 10)",2,44983632,45117395,133764,2,Zeb2-212,92740,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-227;Zeb2-216;Zeb2-229;Zeb2-218;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22629,cg08097350,-0.0000584,0.00000918,-6.361181825,7.18E-10,loss,yes,-0.00000507,0.0000156,-0.32516118,0.745278427,neg,ns,-0.016713408,0.004568089,-3.658730657,0.000297781,neg,ns,3.526103406,0.000232544,0.000157096,1.480265653,0.139817928,pos,ns,0.856240315,Sox6,Sox6_threeUTR,7,115474276,115474325,115474324,115474325,50,-,CAAGACATAAAAATGACTCAAATCCGGCAACTGTGAGGCAAGCCCACACG,3' UTR,7,115470872,116031047,560176,2,Sox6-210,556722,Sox6-210;Sox6-201;Sox6-202;Sox6-204;Sox6-205;Sox6-203;Sox6-212;Sox6-206,Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,57,20679,ENSMUSG00000051910,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2560,cg17634291,-0.00000134,0.00000342,-0.3934087,0.694288072,loss,ns,0.00000189,0.0000058,0.325051103,0.745361654,pos,ns,-0.000834371,0.001700612,-0.490629419,0.624035678,neg,ns,0.20479058,0.0000663,0.0000585,1.13415625,0.257605274,pos,ns,0.925221593,Dvl3,Dvl3_Exon,16,20526084,20526133,20526132,20526133,50,+,TTCAGGCCCATCACCCTGACTGTAGCCAAGTGCTGGGACCCAAGTCCACG,"Exon (Dvl3-201/Dvl3, exon 10 of 15)",16,20516982,20531671,14690,1,Dvl3-201,9102,Dvl3-201;Dvl3-203;Dvl3-204;Dvl3-202,Dvl3;Dvl3;Dvl3;Dvl3,0;0;0;8898,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,3,13544,ENSMUSG00000003233,conserved gene and region,16,20526132,20526338,207,*,207,12,0.608695652,0.645530146,0.057971015,0.00000084,CpGisland,TRUE,U10,Tr-S
15722,cg11164951,-0.00000393,0.0000015,-2.626465447,0.009056187,loss,ns,0.000000824,0.00000254,0.324442945,0.745821525,pos,ns,-0.000649328,0.000744138,-0.872590414,0.383561726,neg,ns,0.416164735,0.00000398,0.0000256,0.155623916,0.876430758,pos,ns,0.042648159,Phip,Phip_Promoter,9,82974572,82974621,82974572,82974573,50,-,CGTTCTAGGGCCAAGTTTTTGTCTCTGTAAAAAATTGCGGGAAATTCAAT,Promoter (<=1kb),9,82866159,82975516,109358,2,Phip-201,895,Phip-201;Phip-207;Phip-204;Phip-210;Phip-205;Phip-215,Phip;Phip;Phip;Phip;Phip;Phip,0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,2,13,83946,ENSMUSG00000032253,conserved gene and region,9,82974471,82974658,188,*,188,18,0.632978723,0.992957747,0.095744681,1.08E-13,CpGisland,TRUE,U1,Pr-A
7002,cg08918617,-0.00000679,0.00000624,-1.088578989,0.277185142,loss,ns,-0.00000344,0.0000106,-0.324330157,0.745906821,neg,ns,-0.009212449,0.003103878,-2.968045009,0.003230513,neg,ns,2.49072845,0.000165519,0.000106742,1.550648616,0.122006187,pos,ns,0.826076648,Gm7382,Gm7382_Promoter,15,40529440,40529489,40529488,40529489,50,-,CTCAGGCATTCCACAGATACATTCAAATGGTGAAGAAAATTCATTGTCCG,Promoter (7-8kb),15,40537321,40538425,1105,1,Gm7382-201,-7881,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,17,22,664872,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18314,cg09270615,0.0000812,0.0000118,6.892546795,3.07E-11,gain,yes,0.00000649,0.00002,0.324307706,0.7459238,pos,ns,0.021812263,0.005864545,3.719344453,0.00023704,pos,ns,3.625178316,-0.000312258,0.000201681,-1.548276322,0.122576032,neg,ns,0.189180042,Gm48316,Gm48316_Intergenic_upstream,13,94708310,94708359,94708310,94708311,50,+,CGTTAACCAGGTGAGATTTCATCATCTAATGGGTTGGGAGGTGTGACCGA,Distal Intergenic,13,94752270,94752593,324,1,Gm48316-201,-43911,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,36,42,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
25691,cg24064661,0.0000397,0.0000101,3.925481358,0.000106687,gain,ns,0.00000557,0.0000172,0.324197239,0.746007346,pos,ns,0.007913199,0.005033901,1.571981432,0.116974906,pos,ns,0.931907295,-0.000115329,0.000173115,-0.666197414,0.50578038,neg,ns,0.65676638,Lmo3,Lmo3_Exon,6,138416568,138416617,138416568,138416569,50,-,CGGTTGCAGCCAGCACAACCTTTCGGCTTGGTGTCTGGCTGGACTGAGAG,"Exon (Lmo3-204/Lmo3, exon 3 of 5)",6,138362918,138581968,219051,2,Lmo3-204,165351,Lmo3-204;Lmo3-207;Lmo3-201;Lmo3-206;Lmo3-202;Lmo3-208;Lmo3-203;Lmo3-205,Lmo3;Lmo3;Lmo3;Lmo3;Lmo3;Lmo3;Lmo3;Lmo3,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,38,109593,ENSMUSG00000030226,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11444,cg00455362,-0.000000266,0.00000311,-0.08556371,0.931868482,loss,ns,0.00000171,0.00000528,0.324154855,0.746039402,pos,ns,-0.003352397,0.00154665,-2.167522148,0.030955991,neg,ns,1.509255293,0.0000487,0.0000532,0.916535921,0.360098325,pos,ns,0.904012649,Loxl1,Loxl1_Exon,9,58293598,58293647,58293598,58293599,50,-,CGCTTGAGGTTGCCGAAGTCACAGGTGCTGTCCTCCAGGCAGAAACTGGC,"Exon (Loxl1-201/Loxl1, exon 4 of 7)",9,58287738,58313186,25449,2,Loxl1-201,19539,Loxl1-201,Loxl1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,16949,ENSMUSG00000032334,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1531,cg20288327,-0.000012,0.00000604,-1.987676083,0.047727042,loss,ns,0.00000332,0.0000103,0.32405097,0.746117972,pos,ns,0.003043333,0.003005642,1.012540083,0.312069525,pos,ns,0.50574864,-0.000236094,0.000103364,-2.284105373,0.023041197,neg,ns,0.912838594,Gm11819,Gm11819_Intergenic_downstream,4,13460975,13461024,13461023,13461024,50,-,TAGTAATGGGTTATAATCTACTGTCTAATAATGCCTGGAGTGTTTTACCG,Distal Intergenic,4,13444770,13445141,372,1,Gm11819-201,16254,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,22,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3314,cg19245883,0.0000206,0.00000472,4.375247941,0.0000166,gain,ns,-0.0000026,0.00000802,-0.323796834,0.746310194,neg,ns,-0.00686241,0.0023489,-2.921542067,0.003738865,neg,ns,2.427260272,0.000267433,0.0000808,3.31069507,0.001040501,pos,ns,0.842450639,Kcnma1,Kcnma1_Exon,14,23526750,23526799,23526798,23526799,50,-,AGCCCCCGTATTTCTTGCGGTTTCCTATTAACTCTATGATTTCAGGGACG,"Exon (Kcnma1-207/Kcnma1, exon 8 of 28)",14,23289431,23803304,513874,2,Kcnma1-207,276505,Kcnma1-207;Kcnma1-210;Kcnma1-205;Kcnma1-201;Kcnma1-208;Kcnma1-209;Kcnma1-212;Kcnma1-204;Kcnma1-202;Kcnma1-211;Kcnma1-229;Kcnma1-234;Kcnma1-223;Kcnma1-214;Kcnma1-216;Kcnma1-219;Kcnma1-220;Kcnma1-224;Kcnma1-233;Kcnma1-236;Kcnma1-237;Kcnma1-213;Kcnma1-228;Kcnma1-203;Kcnma1-206;Kcnma1-221;Kcnma1-225;Kcnma1-226;Kcnma1-230;Kcnma1-235;Kcnma1-217;Kcnma1-238;Kcnma1-231;Kcnma1-218;Kcnma1-222;Kcnma1-232,Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,16,41,16531,ENSMUSG00000063142,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20654,cg22211710,0.00000402,0.00000224,1.796200068,0.073436268,gain,ns,-0.00000123,0.0000038,-0.32369925,0.746384008,neg,ns,0.003807167,0.001113274,3.419793143,0.000710592,pos,ns,3.148379762,-0.0000843,0.0000383,-2.200976121,0.028474631,neg,ns,0.940568801,Adamts6,Adamts6_Intron,13,104352537,104352586,104352585,104352586,50,-,AGACATTTTCCAGCACTGACTGCAGTTCAAAAAATATTAATGTCTAGCCG,"Intron (Adamts6-207/Adamts6, intron 8 of 24)",13,104287835,104496695,208861,1,Adamts6-207,64702,Adamts6-207;Adamts6-202;Adamts6-201;Adamts6-206;Adamts6-203;Adamts6-204;Adamts6-205,Adamts6;Adamts6;Adamts6;Adamts6;Adamts6;Adamts6;Adamts6,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,31,108154,ENSMUSG00000046169,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26384,cg13710033,0.0000367,0.00000478,7.668307786,2.27E-13,gain,yes,-0.00000263,0.00000813,-0.32369818,0.746384817,neg,ns,0.00695684,0.002380608,2.922295974,0.003730071,pos,ns,2.428282894,-0.000165081,0.0000819,-2.016405011,0.044619762,neg,ns,0.1210707,Nkx2-2,Nkx2-2_Exon,2,147188265,147188314,147188265,147188266,50,+,CGGGCAAACACAAATACAAACCGATTGCTAAGCTGCGGACAATGAGCGAA,"Exon (6430503K07Rik-201/6430503K07Rik-201, exon 3 of 3)",2,147186305,147194243,7939,2,Nkx2-2-202,5929,Nkx2-2-203;Nkx2-2-201;Nkx2-2-202;Nkx2-2-204,Nkx2-2;Nkx2-2;Nkx2-2;Nkx2-2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,15,30,18088,ENSMUSG00000027434,conserved gene but different region,2,147188041,147188404,364,*,364,26,0.585164835,0.836633663,0.071428571,2.81E-16,CpGisland,TRUE,U13,Hc-P
6665,cg26087061,-0.0000166,0.0000043,-3.849269375,0.000143896,loss,ns,0.00000236,0.00000731,0.323676325,0.746401349,pos,ns,-0.0000623,0.002140557,-0.02912411,0.976784348,neg,ns,0.010201308,0.00000921,0.0000736,0.125129279,0.900502309,pos,ns,0.930494873,Myof,Myof_Exon,19,37961013,37961062,37961061,37961062,50,-,ACTGAATGGCCTCACCAACATCTTGCAACATGGTGGCTGAATGAAACACG,"Exon (Myof-202/Myof, exon 19 of 53)",19,37899036,38043577,144542,2,Myof-202,82515,Myof-202;Myof-201;Myof-211;Myof-208;Myof-203,Myof;Myof;Myof;Myof;Myof,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,226101,ENSMUSG00000048612,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15380,cg24355006,0.00000778,0.00000472,1.648080976,0.10034916,gain,ns,-0.0000026,0.00000802,-0.323549464,0.746497313,neg,ns,0.004697586,0.002350567,1.998490938,0.046536513,pos,ns,1.332206166,-0.000466519,0.0000808,-5.771198651,1.91E-08,neg,yes,0.768161684,Csnk1g2,Csnk1g2_fiveUTR,10,80634427,80634476,80634427,80634428,50,+,CGTGGAGAGGCCAGGGTATCACAAACTTATGGATTTTGACAAGAAAGGAG,5' UTR,10,80622838,80640741,17904,1,Csnk1g2-201,11589,Csnk1g2-201;Csnk1g2-202;Csnk1g2-205;Csnk1g2-203;Csnk1g2-204;Csnk1g2-207;Csnk1g2-206,Csnk1g2;Csnk1g2;Csnk1g2;Csnk1g2;Csnk1g2;Csnk1g2;Csnk1g2,0;0;0;-1689;-3794;-4685;-4920,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,1,103236,ENSMUSG00000003345,conserved gene and region,10,80634310,80634428,119,*,119,13,0.672268908,0.982222222,0.109243698,9.66E-11,CpGisland,TRUE,U10,Tr-S
24793,cg06674488,-0.00000687,0.00000208,-3.307983446,0.001050277,loss,ns,-0.00000114,0.00000353,-0.323439912,0.746580187,neg,ns,-0.00103252,0.001034284,-0.998294629,0.318915102,neg,ns,0.496324915,-0.0000244,0.0000356,-0.686746142,0.492756092,neg,ns,0.936520972,Smarcc2,Smarcc2_Exon,10,128481667,128481716,128481715,128481716,50,+,AGCTCTGTCCCCCAGGGCCGCCAGGTTGATGCTGATACCAAGGCTGGGCG,"Exon (Smarcc2-202/Smarcc2, exon 18 of 29)",10,128459248,128490482,31235,1,Smarcc2-205,22419,Smarcc2-205;Smarcc2-201;Smarcc2-202;Smarcc2-203;Smarcc2-204,Smarcc2;Smarcc2;Smarcc2;Smarcc2;Smarcc2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,16,68094,ENSMUSG00000025369,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8495,cg18334881,0.00000982,0.00000323,3.042112849,0.002550033,gain,ns,-0.00000177,0.00000549,-0.323401402,0.746609319,neg,ns,-0.000505754,0.00160692,-0.314735201,0.753174446,neg,ns,0.123104423,0.0000596,0.0000553,1.079156113,0.281357068,pos,ns,0.073519882,Lbx1,Lbx1_Intergenic_downstream,19,45229374,45229423,45229422,45229423,50,+,TGGGATTAATTACCACGTTCTGGTCCCTCAGACTGGAGTATTACTTATCG,Distal Intergenic,19,45232684,45235812,3129,2,Lbx1-201,6389,Lbx1-201,Lbx1,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,30,50,16814,ENSMUSG00000025216,mapped to different genes,19,45229389,45229613,225,*,225,22,0.635555556,0.968688845,0.097777778,7.42E-17,CpGisland,TRUE,U3,Pr-B
21296,cg10420191,-0.00000468,0.00000374,-1.253174333,0.211086646,loss,ns,-0.00000205,0.00000635,-0.323375095,0.74662922,neg,ns,0.001188543,0.001859015,0.639340521,0.52307358,pos,ns,0.281437215,-0.000132201,0.0000639,-2.067851328,0.039483318,neg,ns,0.928656159,Gm2726,Gm2726_Intergenic_downstream,13,107187673,107187722,107187673,107187674,50,+,CGGTGCTTGGTGTCATAGCAAACACAATTAGCAAAATGGCATCCAGAGTG,Distal Intergenic,13,107279615,107280191,577,2,Gm2726-201,92469,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,3,100040350,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17793,cg11246853,-0.00000327,0.000000985,-3.323257417,0.000996302,loss,ns,0.000000541,0.00000167,0.323175239,0.746780418,pos,ns,0.0000478,0.000490469,0.097484284,0.922404811,pos,ns,0.03507844,-0.00000798,0.0000169,-0.473151953,0.636437762,neg,ns,0.9667247,Atg13,Atg13_Exon,2,91682848,91682897,91682848,91682849,50,+,CGTCACCACAGGAGTAGGGGTCTGAAAATGTGCCTTTGTGACAGTAAACA,"Exon (Atg13-206/Atg13, exon 3 of 8)",2,91674618,91710576,35959,2,Atg13-202,27679,Atg13-202;Atg13-201;Atg13-205;Atg13-203;Atg13-206,Atg13;Atg13;Atg13;Atg13;Atg13,0;0;-3153;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,51897,ENSMUSG00000027244,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13135,cg08171000,0.0000544,0.00000993,5.484874846,0.000000086,gain,yes,0.00000545,0.0000169,0.323157499,0.74679384,pos,ns,0.017838985,0.004940335,3.610885971,0.000355773,pos,ns,3.448827115,-0.000255234,0.000169898,-1.502280022,0.134042743,neg,ns,0.270645229,Dnah2,Dnah2_Promoter,11,69553113,69553162,69553161,69553162,50,+,CTGGGTTGCCATAGTGACGGTTGCCAAGTCCCTGAGGCTGATAGCCAGCG,Promoter (4-5kb),11,69510666,69549110,38445,2,Dnah2-203,-4003,Dnah2-202;Dnah2-203;Efnb3-201,Dnah2;Dnah2;Efnb3,0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,7,10,327954,ENSMUSG00000005237,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12604,cg21231901,0.00000705,0.00000328,2.147620808,0.032518888,gain,ns,0.0000018,0.00000558,0.323044439,0.746879377,pos,ns,0.000971845,0.001634246,0.594674448,0.552494886,pos,ns,0.257671738,-0.0000239,0.0000562,-0.424583007,0.671435202,neg,ns,0.832108192,Zfp609,Zfp609_Exon,9,65795203,65795252,65795251,65795252,50,+,CCTTTGAGCCTGACATTTCCAGTTTCTGCTGGTCCTTTTCCAGATCGGCG,"Exon (Zfp609-201/Zfp609, exon 2 of 10)",9,65692391,65827564,135174,2,Zfp609-201,32312,Zfp609-201;Zfp609-203,Zfp609;Zfp609,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,10,214812,ENSMUSG00000040524,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20103,cg22115063,-0.00000183,0.00000163,-1.122212176,0.262640677,loss,ns,-0.000000893,0.00000276,-0.323021468,0.746896757,neg,ns,-0.001614827,0.000809625,-1.994538159,0.0469687,neg,ns,1.32819146,0.0000646,0.0000278,2.321036749,0.020933237,pos,ns,0.964416651,Atf7,Atf7_fiveUTR,15,102593636,102593685,102593684,102593685,50,-,ACGAGACATTCACAATAAAGTATATTGTAAACGTACCTGTCCACAGCCCG,5' UTR,15,102525946,102625073,99128,2,Atf7-211,31388,Atf7-211;Atf7-210;Atf7-209;Atf7-202;Atf7-203;Atf7-205;Atf7-204;Atf7-206;Atf7-208;Atf7-213;Atf7-212;Atf7-207;Gm28047-201,Atf7;Atf7;Atf7;Atf7;Atf7;Atf7;Atf7;Atf7;Atf7;Atf7;Atf7;Atf7;Gm28047,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,11,223922,ENSMUSG00000099083,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10826,cg00527510,-0.0000857,0.000019,-4.515221951,0.000009,loss,ns,-0.0000104,0.0000322,-0.322909694,0.746981327,neg,ns,-0.027301778,0.009445634,-2.890412266,0.004118916,neg,ns,2.385217015,0.000700051,0.000324835,2.155099736,0.031923761,pos,ns,0.346413761,Gm26959,Gm26959_Intergenic_downstream,18,55549591,55549640,55549639,55549640,50,+,TTTGACAGAGTAATAAAAATCTCATTATCTCTGAATAGGCAGCAATTTCG,Distal Intergenic,18,55745251,55746228,978,2,Gm26959-201,196588,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,4,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10438,cg04980135,-0.0000145,0.00000589,-2.458017658,0.014517492,loss,ns,-0.00000323,0.00001,-0.322873006,0.747009085,neg,ns,-0.000115492,0.002932844,-0.039378674,0.96861383,neg,ns,0.013849334,-0.000152182,0.00010086,-1.50884317,0.132357351,neg,ns,0.901821026,Prdm6,Prdm6_Exon,18,53540243,53540292,53540243,53540244,50,+,CGAGCTTCTGGTGTGGTACAATGACAGCTATACGTCTTTCTTTGGGATCC,"Exon (Prdm6-201/Prdm6, exon 4 of 7)",18,53464516,53575857,111342,1,Prdm6-201,75727,Prdm6-201;Prdm6-203;Prdm6-204,Prdm6;Prdm6;Prdm6,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,16,225518,ENSMUSG00000069378,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27779,cg21450985,-0.0000158,0.0000123,-1.290486104,0.197843611,loss,ns,0.00000673,0.0000208,0.322868433,0.747012545,pos,ns,0.001951804,0.006106206,0.3196427,0.749454507,pos,ns,0.125254724,-0.000311625,0.000209992,-1.483986489,0.138828526,neg,ns,0.667664982,Gm3809,Gm3809_Intergenic_upstream,1,186898431,186898480,186898479,186898480,50,+,GTGAACAGAGAGCACTCTAATGGGCCTCTGGTGTTAATAAAAGCTTTGCG,Distal Intergenic,1,186960508,186961513,1006,1,Gm3809-201,-62028,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,8,100042375,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3514,cg10476637,-0.0000184,0.00000503,-3.648718984,0.000309125,loss,ns,0.00000276,0.00000855,0.322857019,0.747021182,pos,ns,-0.004024985,0.002505563,-1.606419296,0.109199899,neg,ns,0.961777761,0.0000352,0.0000862,0.40812192,0.683465906,pos,ns,0.89344299,Npsr1,Npsr1_fiveUTR,9,24286783,24286832,24286783,24286784,50,+,CGTCCTGGTGTCCCTCAGCATAGACAGATACCATGCCATCGTCTACCCCA,5' UTR,9,24097996,24289892,191897,1,Npsr1-202,188787,Npsr1-202;Npsr1-201;Npsr1-204,Npsr1;Npsr1;Npsr1,0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,2,319239,ENSMUSG00000043659,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21279,cg05371279,0.0000122,0.00000559,2.189593788,0.029298842,gain,ns,0.00000307,0.0000095,0.322782258,0.747077749,pos,ns,0.001384628,0.002783014,0.497528412,0.619169185,pos,ns,0.208190666,0.000104769,0.0000957,1.094677294,0.274507836,pos,ns,0.878552544,Dock3,Dock3_Exon,9,107082397,107082446,107082397,107082398,50,+,CGGTGATGTGCCGCTTAACCTCCCGCACCTGATCCTGAGTCAGGTGACCA,"Exon (Dock3-201/Dock3, exon 6 of 53)",9,106892825,107231909,339085,2,Dock3-201,149463,Dock3-201;Dock3-207;Dock3-209,Dock3;Dock3;Dock3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,9,208869,ENSMUSG00000039716,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20652,cg22354079,-0.00001,0.00000216,-4.643641857,0.00000506,loss,ns,0.00000118,0.00000367,0.322664868,0.747166574,pos,ns,0.00038662,0.001074608,0.359777696,0.719258354,pos,ns,0.143115085,-0.0000227,0.000037,-0.615461919,0.538701277,neg,ns,0.955722483,Kansl1,Kansl1_threeUTR,11,104334869,104334918,104334917,104334918,50,-,TCACTAAAAACTGTGAAAATTTCCGGCATATGATGTTTGAATATCAAACG,3' UTR,11,104333229,104442291,109063,2,Kansl1-205,107373,Kansl1-205;Kansl1-204;Kansl1-201;Kansl1-203;Kansl1-202;Mapt-204,Kansl1;Kansl1;Kansl1;Kansl1;Kansl1;Mapt,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,11,76719,ENSMUSG00000018412,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9375,cg04891054,0.0000114,0.00000625,1.824074136,0.069103466,gain,ns,0.00000343,0.0000106,0.322599153,0.7472163,pos,ns,-0.002902972,0.003112719,-0.932616174,0.351743964,neg,ns,0.453773346,0.00000611,0.000107046,0.0571079,0.954496035,pos,ns,0.846364821,Tmem260,Tmem260_Intron,14,48456716,48456765,48456716,48456717,50,-,CGGCAGCAGATAGCTTGAAATATATAAATGCTATCATAGCTCTGATTAAT,"Intron (Tmem260-210/Tmem260, intron 3 of 15)",14,48446124,48520368,74245,1,Tmem260-210,10592,Tmem260-210;Tmem260-202;Tmem260-209;Tmem260-203;Tmem260-201;Tmem260-204;Tmem260-205;Tmem260-211,Tmem260;Tmem260;Tmem260;Tmem260;Tmem260;Tmem260;Tmem260;Tmem260,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,11,218989,ENSMUSG00000036339,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6835,cg17130000,-0.0000253,0.0000062,-4.0757913,0.0000583,loss,ns,0.0000034,0.0000105,0.322584183,0.747227628,pos,ns,-0.00070815,0.003086766,-0.229414838,0.818697793,neg,ns,0.08687638,-0.000162776,0.000106154,-1.533400644,0.126197063,neg,ns,0.849229565,Gm12129,Gm12129_Intergenic_downstream,11,38715957,38716006,38716005,38716006,50,+,AGCATATAATAAATTGAGTTTCAATGAGCTGGAACCTCCCGCTTCAGCCG,Distal Intergenic,11,38219069,38220215,1147,1,Gm12129-201,496888,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,11,276941,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11431,cg20450917,0.0000758,0.0000149,5.104842791,0.000000579,gain,yes,-0.00000814,0.0000252,-0.322556115,0.747248867,neg,ns,0.027053265,0.00739351,3.659055587,0.000297419,pos,ns,3.526631014,-0.000717066,0.000254262,-2.820182931,0.005108884,neg,ns,0.421054926,Aox1,Aox1_Exon,1,58078457,58078506,58078457,58078458,50,+,CGAGGAGAAGACATGTTAATAACTGGAGGCCGCCATCCTTACCTTGGAAA,"Exon (Aox1-201/Aox1, exon 23 of 35)",1,58029931,58106413,76483,1,Aox1-201,48526,Aox1-201,Aox1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,11761,ENSMUSG00000063558,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
25446,cg15041810,0.0000524,0.000012,4.366505097,0.0000172,gain,ns,-0.00000657,0.0000204,-0.322473596,0.747311311,neg,ns,0.015781465,0.005967555,2.64454466,0.008596608,pos,ns,2.065672883,-0.00066139,0.000205224,-3.222774058,0.00140467,neg,ns,0.241316478,Zfp281,Zfp281_Exon,1,136627705,136627754,136627753,136627754,50,+,AGTTAGCTAGCCAGATAGATCCTCAGAAAGACATAGAGCCTAGAACAACG,"Exon (Zfp281-201/Zfp281, exon 2 of 2)",1,136624901,136630053,5153,1,Zfp281-201,2804,Zfp281-201;Zfp281-202,Zfp281;Zfp281,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,7,226442,ENSMUSG00000041483,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
18837,cg08334962,-0.000000181,0.000000414,-0.436766685,0.662584626,loss,ns,-0.000000227,0.000000703,-0.322381254,0.747381189,neg,ns,0.000434681,0.000206069,2.109397558,0.03571176,pos,ns,1.447188742,-0.000023,0.00000709,-3.251362584,0.001274981,neg,ns,0.011197738,Epop,Epop_Promoter,11,97629716,97629765,97629716,97629717,50,-,CGGAGACCGCGTTATAGAGAACTGCCCCCTCGCTGCCCCAATACCAGCGC,Promoter (<=1kb),11,97627389,97629702,2314,2,Epop-201,-63,Epop-201,Epop,-14,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,1,103551,ENSMUSG00000043439,conserved gene but different region,11,97629299,97630055,757,*,757,95,0.721268164,0.967848299,0.125495377,1.64E-82,CpGisland,TRUE,U3,Pr-B
17079,cg09938227,0.00004,0.00000341,11.72075252,1.64E-26,gain,yes,0.00000187,0.0000058,0.32219737,0.747520348,pos,ns,0.00383039,0.001699484,2.253854227,0.024903589,pos,ns,1.60373806,0.0000886,0.0000584,1.51676086,0.130346123,pos,ns,0.083269092,Rhbg,Rhbg_Exon,3,88215646,88215695,88215694,88215695,50,-,GTCTTCATAAAGCTAGATAACCGAAAGTAAAAATAACCCCATACACTGCG,"Exon (Mir9-1-201/Mir9-1-201, exon 1 of 1)",3,88242874,88254709,11836,2,Rhbg-201,39063,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,58176,ENSMUSG00000104445,mapped to different genes,3,88215667,88215883,217,*,217,14,0.64516129,0.626262626,0.064516129,1.97E-08,CpGisland,TRUE,U3,Pr-B
10030,cg27490365,-0.0000119,0.00000356,-3.347975873,0.000914389,loss,ns,-0.00000195,0.00000605,-0.322175095,0.747537206,neg,ns,0.001349969,0.001771459,0.762066111,0.446599952,pos,ns,0.350081328,-0.00011389,0.0000609,-1.869497612,0.062496205,neg,ns,0.933285331,Dhx15,Dhx15_Intergenic_downstream,5,52039881,52039930,52039929,52039930,50,+,AATAATCTCATAAATCTCTTCATTTAAAAGACTTATTAGAATACAGATCG,Distal Intergenic,5,52153324,52157803,4480,2,Dhx15-206,117873,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,14,13204,ENSMUSG00000029169,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27,cg07336259,0.000189313,0.0000115,16.42204432,4.86E-44,gain,yes,-0.00000631,0.0000196,-0.322092591,0.747599646,neg,ns,0.023195409,0.005737599,4.042702876,0.0000667,pos,ns,4.175737348,-0.0000248,0.000197316,-0.125442091,0.900254878,neg,ns,0.300455434,Kif3c,Kif3c_fiveUTR,12,3365978,3366027,3366026,3366027,50,-,AAGATGGCCAGTAAGACCAAGGCCAGCGAGGCCCTCAAGGTGGTGGCCCG,Promoter (<=1kb),12,3365132,3404064,38933,1,Kif3c-205,846,Kif3c-205;Kif3c-201,Kif3c;Kif3c,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,1,16570,ENSMUSG00000020668,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2279,cg10860834,0.0000911,0.0000132,6.902193395,2.90E-11,gain,yes,-0.00000722,0.0000224,-0.322021519,0.747653435,neg,ns,0.006168105,0.00656904,0.938965965,0.34847923,pos,ns,0.457823101,-0.0000632,0.000225909,-0.279550284,0.780008978,neg,ns,0.839128818,Meis1,Meis1_Intron,11,18930304,18930353,18930352,18930353,50,+,CTCTGCTGTGGTTTCTTTATGAGCTGGTGATTACAGCTACTTCCTATGCG,"Intron (Meis1-206/Meis1, intron 8 of 9)",11,18879817,19018985,139169,2,Meis1-206,88632,Meis1-206;Meis1-202;Meis1-209;Meis1-201;Meis1-203;Meis1-208;Meis1-207,Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,88,17268,ENSMUSG00000020160,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18842,cg10608454,-0.0000149,0.00000481,-3.10010522,0.002112099,loss,ns,0.00000263,0.00000816,0.321976721,0.74768734,pos,ns,-0.006914548,0.002391834,-2.890898152,0.004112723,neg,ns,2.385870511,-0.0000222,0.0000823,-0.269467699,0.787749068,neg,ns,0.888437672,Gk2,Gk2_Intergenic_upstream,5,97655412,97655461,97655460,97655461,50,+,GACCACTTGGCAAACATAAGACCCCCAAAGTAAAATGATAACTCTGGCCG,Distal Intergenic,5,97455142,97457021,1880,2,Gk2-201,-198391,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,13,14626,ENSMUSG00000050553,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6879,cg21526150,-0.00000759,0.00000195,-3.894172183,0.000120709,loss,ns,0.00000107,0.00000331,0.321945885,0.747710679,pos,ns,-0.001901872,0.000969653,-1.961395093,0.050727732,neg,ns,1.294754551,0.0000185,0.0000333,0.555067225,0.579248968,pos,ns,0.058910238,Kdm7a,Kdm7a_Intron,6,39205462,39205511,39205462,39205463,50,+,CGGAGTCAAGAGGCTGTGGCGCCGCCCTTTATTAGCCTCACACTTTGATT,"Intron (Kdm7a-201/Kdm7a, intron 1 of 19)",6,39136623,39206789,70167,2,Kdm7a-201,1278,Kdm7a-201,Kdm7a,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,8,338523,ENSMUSG00000042599,conserved gene and region,6,39205446,39207371,1926,*,1926,267,0.729491173,1.042169774,0.138629284,2.72E-244,CpGisland,TRUE,U1,Pr-A
18974,cg27273758,-0.00000377,0.00000445,-0.847712066,0.397252365,loss,ns,-0.00000243,0.00000756,-0.321883414,0.747757961,neg,ns,-0.002033175,0.002216046,-0.917478609,0.359605131,neg,ns,0.44417412,0.0000894,0.0000762,1.172982911,0.24170317,pos,ns,0.530820243,Fbxl20,Fbxl20_Exon,11,98089623,98089672,98089671,98089672,50,+,GTCTGCTGCCCCCTACTGATGGGGGTGGAGTGACAGGTGCGAAGTAGGCG,"Exon (Fbxl20-201/Fbxl20, exon 15 of 15)",11,98082556,98149612,67057,2,Fbxl20-201,59940,Fbxl20-201;Fbxl20-202,Fbxl20;Fbxl20,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,72194,ENSMUSG00000020883,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13001,cg04520607,0.0000325,0.0000125,2.596545683,0.009865345,gain,ns,-0.00000684,0.0000213,-0.321718911,0.747882472,neg,ns,0.002946809,0.006229215,0.473062639,0.636501408,pos,ns,0.196200632,-0.000117904,0.000214222,-0.550382245,0.582453588,neg,ns,0.269084103,Erbb4,Erbb4_Intron,1,69105017,69105066,69105065,69105066,50,-,TTCAAAAATATGCCACTTTCCCCTGAACTCCAAGCGTGTCTAATAATGCG,"Intron (Erbb4-201/Erbb4, intron 1 of 27)",1,68032186,69107756,1075571,2,Erbb4-201,2690,Erbb4-201;Erbb4-202;Erbb4-205,Erbb4;Erbb4;Erbb4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,13,13869,ENSMUSG00000062209,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
15757,cg17565502,0.0000496,0.0000171,2.901544113,0.003979142,gain,ns,-0.00000933,0.000029,-0.321700097,0.747896712,neg,ns,0.023023426,0.008500218,2.708568993,0.007132799,pos,ns,2.146740044,-0.000522486,0.000292322,-1.787364484,0.074855418,neg,ns,0.335574437,Pkdcc,Pkdcc_Intergenic_upstream,17,83179184,83179233,83179184,83179185,50,+,CGTCCTCCGGGTTTTCAAAGTCACTTCTTGTCAGGTGCCCTGGTTAAGAG,Distal Intergenic,17,83215292,83225070,9779,1,Pkdcc-204,-36059,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,10,106522,ENSMUSG00000024247,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16702,cg25796802,0.0000158,0.00000826,1.910812368,0.056950933,gain,ns,-0.00000451,0.000014,-0.321665184,0.747923138,neg,ns,0.004274509,0.004108989,1.040282333,0.299019405,pos,ns,0.524300627,0.000097,0.000141308,0.686378596,0.492987455,pos,ns,0.746374235,Gpatch2l,Gpatch2l_Intron,12,86192193,86192242,86192193,86192194,50,+,CGCCGTGGGAGTCCATTCATTTTAATAAGAGGTACACCCTGTGTTATTAA,"Intron (Gm805-201/Gm805-201, intron 4 of 4)",12,86241858,86291784,49927,1,Gpatch2l-204,-49616,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,17,70373,ENSMUSG00000021254,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22069,cg15064988,-0.0000195,0.00000594,-3.285632256,0.001134177,loss,ns,0.00000325,0.0000101,0.321627957,0.747951317,pos,ns,-0.001835286,0.00295841,-0.620362194,0.535475134,neg,ns,0.271260692,-0.000258149,0.000101739,-2.537357282,0.011659094,neg,ns,0.879041425,Vac14,Vac14_Intron,8,110665330,110665379,110665330,110665331,50,-,CGGCTTTAATTGTGCAATTGAAGTGTAATTTGCATTCATTTGCCATTTGG,"Intron (Vac14-205/Vac14, intron 12 of 18)",8,110618585,110720396,101812,1,Vac14-205,46745,Vac14-205;Vac14-201;Vac14-202;Vac14-203;Vac14-204;Vac14-206,Vac14;Vac14;Vac14;Vac14;Vac14;Vac14,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,3,234729,ENSMUSG00000010936,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14635,cg06532919,-0.0000065,0.00000346,-1.87712598,0.06143981,loss,ns,0.00000189,0.00000588,0.321596506,0.747975124,pos,ns,0.000522243,0.001723597,0.302995726,0.762096343,pos,ns,0.117990122,0.0000155,0.0000593,0.262275733,0.793283069,pos,ns,0.939868535,Katnal2,Katnal2_fiveUTR,18,77007533,77007582,77007581,77007582,50,-,CGCATCTCACTGTTCATGCCAATAAATGCACTCAGAGGTTTCAGCAGTCG,5' UTR,18,76977148,77047308,70161,2,Katnal2-205,39726,Katnal2-205;Katnal2-206;Katnal2-202;Katnal2-208;Katnal2-207;Katnal2-210;Katnal2-201;Katnal2-204;Katnal2-209;Katnal2-211;Katnal2-203,Katnal2;Katnal2;Katnal2;Katnal2;Katnal2;Katnal2;Katnal2;Katnal2;Katnal2;Katnal2;Katnal2,0;0;0;0;0;-661;0;0;0;39705;39716,TRUE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,1,71206,ENSMUSG00000025420,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9201,cg00264131,-0.0000857,0.0000155,-5.521447599,7.12E-08,loss,yes,0.00000848,0.0000264,0.321546851,0.748012709,pos,ns,0.032498247,0.007725458,4.206643304,0.000034,pos,ns,4.46889198,-0.000853709,0.000265678,-3.213324191,0.001450158,neg,ns,0.706367311,Cadm1,Cadm1_Promoter,9,47529104,47529153,47529152,47529153,50,+,ATTCTATGAATACTTAAATTATTATAAACCTTTACACTTAATATGGCTCG,Promoter (1-2kb),9,47530173,47853385,323213,1,Cadm1-204,-1020,Cadm1-204;Cadm1-209;Cadm1-206;Cadm1-202;Cadm1-203;Cadm1-207;Cadm1-205;Cadm1-211;Cadm1-210;Cadm1-208;Cadm1-201,Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1,0;0;0;0;0;0;0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,77,54725,ENSMUSG00000032076,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23333,cg20076842,0.000112244,0.0000115,9.774862703,7.59E-20,gain,yes,-0.00000627,0.0000195,-0.321533716,0.748022652,neg,ns,0.009651935,0.005715167,1.688828346,0.09225787,pos,ns,1.034996575,0.000063,0.000196544,0.320379556,0.748896465,pos,ns,0.15174227,Rbms3,Rbms3_Exon,9,117872664,117872713,117872712,117872713,50,+,CTCAACATCCATCTCCATCTTCCCATTCACTGGAGGGCAAGACAAAAGCG,Promoter (<=1kb),9,116578025,117872681,1294657,2,Rbms3-214,0,Rbms3-214;Rbms3-213;Zcwpw2-201;Zcwpw2-203,Rbms3;Rbms3;Zcwpw2;Zcwpw2,0;-80;141420;141447,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,207181,ENSMUSG00000039607,mapped to different genes,9,117872712,117872988,277,*,277,41,0.794223827,0.939837802,0.14801444,2.47E-39,CpGisland,TRUE,U3,Pr-B
22705,cg25759734,-0.0000448,0.00000831,-5.394208141,0.000000137,loss,yes,-0.00000454,0.0000141,-0.321296317,0.74820236,neg,ns,-0.003947857,0.004135509,-0.954624204,0.340511569,neg,ns,0.467868128,0.000063,0.00014222,0.443017435,0.658062112,pos,ns,0.930664768,BC052040,BC052040_Intron,2,115765280,115765329,115765280,115765281,50,-,CGTGTTTCCCTGGGGAAATAACTGAGAAAACATGTAATAATTCACACGAC,"Intron (BC052040-203/BC052040, intron 10 of 10)",2,115581716,115778768,197053,1,BC052040-203,183564,BC052040-203;BC052040-201,BC052040;BC052040,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,37,49,399568,ENSMUSG00000040282,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12742,cg21859328,0.00000102,0.00000256,0.397291891,0.691425628,gain,ns,0.0000014,0.00000434,0.321295337,0.748203102,pos,ns,0.002603687,0.001272887,2.04549662,0.041649735,pos,ns,1.380387761,-0.000101143,0.0000438,-2.310556215,0.021513565,neg,ns,0.948305722,Cadm2,Cadm2_Intron,16,67031100,67031149,67031148,67031149,50,+,TGCAAATGAATCCTGTTGATGCTTTTATTACTACCGATTCATACTGTTCG,"Intron (Cadm2-201/Cadm2, intron 1 of 9)",16,66655421,67620908,965488,2,Cadm2-201,589759,Cadm2-201;Cadm2-202;Cadm2-203;Cadm2-204,Cadm2;Cadm2;Cadm2;Cadm2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,9,239857,ENSMUSG00000064115,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24189,cg09589586,-0.00004,0.00000461,-8.682924931,2.24E-16,loss,yes,0.00000252,0.00000783,0.321286538,0.748209763,pos,ns,-0.006613203,0.002293848,-2.883016409,0.004214241,neg,ns,2.375280629,0.00011164,0.0000789,1.415223722,0.158006677,pos,ns,0.935263761,Tnrc6a,Tnrc6a_Exon,7,123189905,123189954,123189953,123189954,50,-,CTCATGAGCTGTGGAAGGTCCCTTTGCCACCTAAAAACATCACTGCTCCG,"Exon (Tnrc6a-201/Tnrc6a, exon 21 of 24)",7,123124177,123193987,69811,1,Tnrc6a-203,65728,Tnrc6a-203;Tnrc6a-201;Tnrc6a-205;Tnrc6a-208,Tnrc6a;Tnrc6a;Tnrc6a;Tnrc6a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,17,24,233833,ENSMUSG00000052707,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13970,cg16106100,0.000000729,0.00000258,0.282990559,0.777372947,gain,ns,-0.00000141,0.00000438,-0.321231927,0.748251105,neg,ns,-0.001074537,0.001281825,-0.838286144,0.402515899,neg,ns,0.395216961,0.0000522,0.0000441,1.185157313,0.236862981,pos,ns,0.926551494,Brd9,Brd9_Exon,13,73942634,73942683,73942634,73942635,50,-,CGGCTGTTAGCTTTGAAGCGCAGCATGTCGTTTATGCAGGACATGGATTT,"Exon (Brd9-205/Brd9, exon 4 of 13)",13,73937811,73960894,23084,1,Brd9-206,4823,Brd9-206;Brd9-205;Brd9-201;Brd9-202;Brd9-211;Brd9-208;Brd9-207;Brd9-212;Brd9-209;Brd9-210;Brd9-203;Trip13-201,Brd9;Brd9;Brd9;Brd9;Brd9;Brd9;Brd9;Brd9;Brd9;Brd9;Brd9;Trip13,0;0;0;0;0;4524;4482;0;0;-1213;-2877;-4850,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,105246,ENSMUSG00000057649,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13579,cg02103833,0.0000055,0.00000175,3.146728688,0.001811483,gain,ns,-0.000000954,0.00000297,-0.321156604,0.748308128,neg,ns,0.000955636,0.000870057,1.098359392,0.272899924,pos,ns,0.563996585,-0.0000348,0.0000299,-1.164607203,0.245073464,neg,ns,0.949355376,Hat1,Hat1_Exon,2,71421170,71421219,71421170,71421171,50,+,CGACTGTAATTGACCTGCTTGGCTTTCTGTTTTATCTGCAGATTTGAGAA,"Exon (Hat1-202/Hat1, exon 7 of 11)",2,71388958,71441622,52665,1,Hat1-202,32212,Hat1-202;Hat1-201;Hat1-204,Hat1;Hat1;Hat1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,12,107435,ENSMUSG00000027018,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3085,cg09117260,0.00000619,0.00000246,2.512428862,0.012497845,gain,ns,-0.00000134,0.00000418,-0.321155164,0.748309218,neg,ns,-0.001515605,0.001225487,-1.2367373,0.217120736,neg,ns,0.663298698,0.0000859,0.0000421,2.037889308,0.042409668,pos,ns,0.941863847,Lrmda,Lrmda_Intron,14,22641869,22641918,22641869,22641870,50,+,CGACAGAAGGTGCCATTAGCAGAAATACATCATCTCCCAGTGGTGCTAGC,"Intron (Lrmda-201/Lrmda, intron 5 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,622157,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206,Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18871,cg20057228,0.000000541,0.00000154,0.352010666,0.725069433,gain,ns,0.000000838,0.00000261,0.321149034,0.748313859,pos,ns,0.003254477,0.000764875,4.254912847,0.0000277,pos,ns,4.556985583,-0.0000801,0.0000263,-3.046843922,0.002511401,neg,ns,0.960959759,Nfia,Nfia_Exon,4,97783397,97783446,97783397,97783398,50,-,CGAAGAATTGACTGCCTCCGCCAGGCAGATAAAGTCTGGAGGTTGGACCT,"Exon (Nfia-208/Nfia, exon 2 of 4)",4,97772734,98000466,227733,1,Nfia-208,10663,Nfia-208;Nfia-202;Nfia-203;Nfia-205;Nfia-201;Nfia-204,Nfia;Nfia;Nfia;Nfia;Nfia;Nfia,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,44,18027,ENSMUSG00000028565,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10840,cg12221314,0.00000267,0.00000225,1.184550931,0.23710242,gain,ns,0.00000123,0.00000383,0.321070201,0.74837354,pos,ns,0.000184767,0.001122065,0.164667281,0.86931319,pos,ns,0.060823731,0.00000443,0.0000386,0.114925794,0.908578342,pos,ns,0.93761166,Ralgapa1,Ralgapa1_Intron,12,55614515,55614564,55614515,55614516,50,-,CGAATTTTCTGCAGTTAATAGAGTCCTTTGATTCACAGCAGTGCCCCTTG,"Intron (Ralgapa1-211/Ralgapa1, intron 38 of 39)",12,55602896,55820767,217872,2,Ralgapa1-211,206203,Ralgapa1-211;Ralgapa1-212;Ralgapa1-201;Ralgapa1-202;Ralgapa1-205;Ralgapa1-206;Ralgapa1-204;Ralgapa1-203,Ralgapa1;Ralgapa1;Ralgapa1;Ralgapa1;Ralgapa1;Ralgapa1;Ralgapa1;Ralgapa1,0;0;0;0;0;-1878;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,15,56784,ENSMUSG00000021027,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3245,cg01211648,-0.0000129,0.00000674,-1.910394228,0.057004924,loss,ns,-0.00000367,0.0000114,-0.321063442,0.748378656,neg,ns,-0.002833813,0.003352594,-0.845259981,0.398617605,neg,ns,0.399443525,-0.000160613,0.000115295,-1.393057086,0.164600656,neg,ns,0.9043353,Gm11888,Gm11888_Intron,4,23341401,23341450,23341401,23341402,50,-,CGCAATAAACAGCTAAATGAGGCGCACAGCAATTTCACTTGTCACCAGCG,"Intron (Gm11884-201/Gm11884-201, intron 1 of 4)",4,23484820,23486020,1201,1,Gm11888-201,-143419,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,14,625462,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18253,cg02020466,0.0000558,0.00000982,5.680333949,0.000000031,gain,yes,-0.00000535,0.0000167,-0.320741954,0.748622059,neg,ns,0.000962733,0.004885872,0.197044168,0.8439221,pos,ns,0.07369764,0.00012337,0.000168025,0.734235295,0.46336033,pos,ns,0.199903526,Ap3b1,Ap3b1_Intergenic_downstream,13,94596501,94596550,94596549,94596550,50,-,AATAGGCGTTTTATTTATCGCAGTGCCAGGGGCCTCTTAGCGGAAGAGCG,Distal Intergenic,13,94542303,94547867,5565,1,Ap3b1-202,54247,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,33,55,11774,ENSMUSG00000021686,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9444,cg08389403,0.00000103,0.0000162,0.064016943,0.948997995,gain,ns,0.00000881,0.0000275,0.320733737,0.748628281,pos,ns,0.014547903,0.00804404,1.808531905,0.071492597,pos,ns,1.145738924,0.0000848,0.000276634,0.306592282,0.759359553,pos,ns,0.77847558,Zbtb16,Zbtb16_Intron,9,48758029,48758078,48758077,48758078,50,+,TTATTGCCTTAATACCCACCTTTGTCCAACAGGCAGTTTTGACAACAGCG,"Intron (Zbtb16-201/Zbtb16, intron 2 of 6)",9,48654297,48835945,181649,2,Zbtb16-201,77867,Zbtb16-201;Zbtb16-202,Zbtb16;Zbtb16,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,37,235320,ENSMUSG00000066687,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12853,cg03830212,0.000000848,0.00000473,0.179514319,0.857651152,gain,ns,-0.00000257,0.00000803,-0.320630306,0.748706595,neg,ns,0.008944323,0.002352076,3.802735044,0.000172337,pos,ns,3.763621339,-0.000323947,0.0000809,-4.004900008,0.0000777,neg,ns,0.084392854,Ebf2,Ebf2_Intron,14,67344750,67344799,67344750,67344751,50,+,CGGGTGACATGTGTCAACCCTTGTCATTGAGAAACAAGAAAGGCAATGTG,"Intron (Ebf2-201/Ebf2, intron 7 of 16)",14,67233292,67429777,196486,1,Ebf2-201,111458,Ebf2-201;Ebf2-203;Ebf2-202,Ebf2;Ebf2;Ebf2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,21,13592,ENSMUSG00000022053,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11951,cg24238152,0.0000294,0.00000724,4.057245706,0.0000629,gain,ns,0.00000395,0.0000123,0.320604075,0.748726457,pos,ns,0.00684361,0.003605471,1.898118187,0.058609212,pos,ns,1.232034119,0.0000333,0.000123992,0.268879467,0.788201295,pos,ns,0.099853796,Tbr1,Tbr1_Exon,2,61803779,61803828,61803779,61803780,50,-,CGACAGCTTATGATTATTTCAAAACTTAAAAAGGAGATCATAGATTGTCA,Promoter (<=1kb),2,61802930,61804558,1629,1,Tbr1-204,849,Psmd14-201;Psmd14-208;Psmd14-202;Tbr1-204;Tbr1-201;Tbr1-202;Tbr1-203,Psmd14;Psmd14;Psmd14;Tbr1;Tbr1;Tbr1;Tbr1,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,24,27,21375,ENSMUSG00000035033,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23040,cg11017441,0.000000235,0.000000786,0.298878908,0.765232697,gain,ns,0.000000428,0.00000134,0.32040808,0.748874865,pos,ns,0.000630916,0.000391424,1.611847513,0.108012723,pos,ns,0.966525084,-0.0000148,0.0000135,-1.099034159,0.272605968,neg,ns,0.978107404,Bco1,Bco1_threeUTR,8,117133004,117133053,117133052,117133053,50,+,ATCCCCAAAAGCTGCCTTTTCTGCTCATTCTGGATGCCAAAAGCTTTACG,3' UTR,8,117095854,117133720,37867,1,Bco1-201,37150,Bco1-201;Bco1-202;Bco1-203,Bco1;Bco1;Bco1,0;37139;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,63857,ENSMUSG00000031845,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17586,cg09450031,0.0000019,0.0000418,0.045336574,0.963868226,gain,ns,-0.0000228,0.0000711,-0.320400812,0.748880369,neg,ns,0.027102307,0.020824944,1.301434771,0.194076036,pos,ns,0.712028088,-0.001625527,0.000716168,-2.269756892,0.023908834,neg,ns,0.722708665,Gm49612,Gm49612_Promoter,16,91140595,91140644,91140595,91140596,50,-,CGGAGGGCGACAGGTGGCCTACTAGACAGCTCAATTAAGCTGCTCATTAA,Promoter (5-6kb),16,91135275,91135476,202,2,Gm49612-201,-5168,NA,NA,NA,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,5,5,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
3139,cg13662954,-0.00000916,0.00000354,-2.588498872,0.010093734,loss,ns,-0.00000193,0.00000601,-0.320309031,0.74894987,neg,ns,-0.002310846,0.001761273,-1.31203194,0.19048007,neg,ns,0.720150459,-0.0000293,0.0000606,-0.482930803,0.629485738,neg,ns,0.953628921,Bmper,Bmper_Intergenic_upstream,9,22954674,22954723,22954674,22954675,50,+,CGCCATATAAATGCAGAAATCCATTATAATCATACAGAAGAGTGGCTTTA,Distal Intergenic,9,23223076,23485200,262125,1,Bmper-201,-268353,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,73230,ENSMUSG00000031963,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10060,cg05272248,0.000000328,0.000000283,1.156986075,0.248168794,gain,ns,0.000000154,0.000000481,0.32025646,0.74898968,pos,ns,0.000228805,0.000140968,1.623093184,0.105585918,pos,ns,0.976394001,-0.00000866,0.00000485,-1.787112082,0.074896287,neg,ns,0.006840051,Maml3,Maml3_fiveUTR,3,52104792,52104841,52104840,52104841,50,-,GTCCGAGGCGACTGCAAAAGTAGATCGGTGAAGTCCTTTGCAAAACGCCG,Promoter (<=1kb),3,51685907,52105076,419170,2,Maml3-202,235,Maml3-202,Maml3,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,14,32,433586,ENSMUSG00000061143,conserved gene and region,3,52104757,52105132,376,*,376,44,0.686170213,1.011741683,0.117021277,5.57E-37,CpGisland,TRUE,U1,Pr-A
5901,cg19132054,-0.000007,0.0000059,-1.186464678,0.236347333,loss,ns,0.00000321,0.00001,0.320232285,0.749007987,pos,ns,-0.003937119,0.00293651,-1.340747713,0.180984008,neg,ns,0.742359799,0.0000841,0.000100986,0.832779382,0.405610283,pos,ns,0.771344853,Ctnna1,Ctnna1_Exon,18,35212836,35212885,35212836,35212837,50,+,CGTGTTTGGGATCGGAGCTGCCTGTGGTTCTGAACCATTGAGCACTGCCT,"Exon (Lrrtm2-201/Lrrtm2, exon 2 of 2)",18,35118859,35254779,135921,1,Ctnna1-201,93977,Ctnna1-201;Ctnna1-204;Ctnna1-210;Ctnna1-203;Ctnna1-202;Lrrtm2-201;Lrrtm2-202;Lrrtm2-203,Ctnna1;Ctnna1;Ctnna1;Ctnna1;Ctnna1;Lrrtm2;Lrrtm2;Lrrtm2,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,13,12385,ENSMUSG00000037815,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17579,cg06784824,0.000065,0.0000149,4.363342768,0.0000175,gain,ns,-0.0000081,0.0000253,-0.320184008,0.749044546,neg,ns,0.024767161,0.007413259,3.340927239,0.000937084,pos,ns,3.028221513,-0.000707948,0.000254941,-2.776905618,0.005821931,neg,ns,0.192126168,Spi1,Spi1_Exon,2,91115138,91115187,91115186,91115187,50,+,AGGACAGCATCTGGTGGGTGGACAAGGACAAGGGCACCTTCCAGTTCTCG,"Exon (Spi1-201/Spi1, exon 5 of 5)",2,91096096,91115756,19661,1,Spi1-201,19042,Mybpc3-201;Mybpc3-202;Mybpc3-203;Spi1-204;Spi1-201;Spi1-203,Mybpc3;Mybpc3;Mybpc3;Spi1;Spi1;Spi1,-2957;-2957;-2957;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,7,20375,ENSMUSG00000002111,conserved gene but different region,2,91115186,91115299,114,*,114,12,0.649122807,1.002197802,0.105263158,9.79E-10,CpGisland,TRUE,NA,NRS
6640,cg18550730,-0.0000021,0.00000807,-0.260329701,0.794782294,loss,ns,0.00000439,0.0000137,0.320062476,0.749136582,pos,ns,-0.005066501,0.004015247,-1.261815464,0.207963763,neg,ns,0.682012333,0.000188241,0.000138084,1.363234606,0.17379785,pos,ns,0.724353235,Uri1,Uri1_Intergenic_downstream,7,37896893,37896942,37896941,37896942,50,-,ACAAAAATAATTAAAATTCTTTGGCACTCTTGTATCTTTTCCATTAAACG,Distal Intergenic,7,37961301,37962528,1228,2,Uri1-203,65635,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,19,27,19777,ENSMUSG00000030421,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25108,cg18753125,0.0000321,0.00000906,3.539580953,0.000462188,gain,ns,0.00000493,0.0000154,0.320002405,0.749182076,pos,ns,0.013662172,0.004511211,3.028493484,0.002664314,pos,ns,2.574414532,-0.000199997,0.00015514,-1.289137611,0.198311339,neg,ns,0.011053098,Ahdc1,Ahdc1_Intron,4,133012910,133012959,133012910,133012911,50,-,CGCGTGCCCGGTTACCTGGCGAACAAAGTCGGCTCACTTTTGCATAAATA,"Intron (Ahdc1-210/Ahdc1, intron 2 of 3)",4,133011260,133060820,49561,1,Ahdc1-210,1650,Ahdc1-210;Ahdc1-203;Ahdc1-204;Ahdc1-205;Ahdc1-207;Ahdc1-211;Ahdc1-209;Ahdc1-206;Ahdc1-201,Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,35,49,230793,ENSMUSG00000037692,conserved gene but different region,4,133012811,133013009,199,*,199,14,0.577889447,0.928666667,0.070351759,6.46E-09,CpGisland,TRUE,NA,NRS
13170,cg17406224,0.00000147,0.00000308,0.475888013,0.634489352,gain,ns,0.00000167,0.00000523,0.319973597,0.749203893,pos,ns,0.000617653,0.001532357,0.403074173,0.687171506,pos,ns,0.162934857,-0.0000996,0.0000527,-1.890933402,0.059565509,neg,ns,0.927586058,Gm11221,Gm11221_Intergenic_upstream,4,69618413,69618462,69618413,69618414,50,-,CGCTTTATAATGAAAATACTGTATATAATTAGAATCTAATAGGAAGAAAA,Distal Intergenic,4,69691978,69692574,597,1,Gm11221-201,-73565,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,4,622491,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23138,cg13356361,0.0000918,0.0000116,7.910952899,4.55E-14,gain,yes,0.00000631,0.0000197,0.319915375,0.749247987,pos,ns,0.007900893,0.005778571,1.367274614,0.172529797,pos,ns,0.763135889,-0.0000636,0.000198725,-0.320114207,0.749097406,neg,ns,0.605877364,Rnf220,Rnf220_Intron,4,117322244,117322293,117322244,117322245,50,+,CGTGGAGAATTCACGTCTTCACTCCCAGGAGCCCAGCTTCCGTCCTGAGC,"Intron (Rnf220-201/Rnf220, intron 2 of 14)",4,117271463,117497052,225590,2,Rnf220-201,174759,Rnf220-201;Rnf220-202;Rnf220-207,Rnf220;Rnf220;Rnf220,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3604,cg21237592,0.0000196,0.00000981,2.002860875,0.046062633,gain,ns,0.00000533,0.0000167,0.319801995,0.749333857,pos,ns,0.003388393,0.0048804,0.69428587,0.48802292,pos,ns,0.311559781,-0.0000746,0.000167837,-0.444570891,0.656940102,neg,ns,0.861098354,Klhl32,Klhl32_Intron,4,24698346,24698395,24698394,24698395,50,+,CCTCCTCTTGCAGGTCACGTCTTTCACATAAAAGTGCTAAACTAATGCCG,"Intron (Klhl32-203/Klhl32, intron 4 of 7)",4,24612554,24800890,188337,2,Klhl32-203,102495,Klhl32-203;Klhl32-204;Klhl32-207;Klhl32-205;Klhl32-201;Klhl32-202,Klhl32;Klhl32;Klhl32;Klhl32;Klhl32;Klhl32,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,10,212390,ENSMUSG00000040387,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10569,cg06582507,0.0000961,0.0000153,6.276995069,1.16E-09,gain,yes,-0.00000832,0.000026,-0.319779428,0.749350949,neg,ns,0.025959218,0.007619932,3.406751969,0.000744123,pos,ns,3.128355296,-0.000509784,0.000262049,-1.945379474,0.052633081,neg,ns,0.399800983,Gm5821,Gm5821_Exon,18,54452716,54452765,54452764,54452765,50,+,CTGATCTGAGATAATGCGTTCTTGCCCAATCATGCTACAAAGAAGCAGCG,"Exon (Redrum-201/Redrum-201, exon 3 of 3)",18,54766132,54766380,249,1,Gm5821-201,-313367,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,4,545257,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
25505,cg20632713,-0.0000245,0.00000435,-5.648820495,3.66E-08,loss,yes,0.00000236,0.00000738,0.319712382,0.749401729,pos,ns,-0.005011551,0.002162817,-2.317140708,0.021147348,neg,ns,1.674744089,0.0000877,0.0000744,1.179614074,0.239058208,pos,ns,0.957224749,Mgmt,Mgmt_Intron,7,137007357,137007406,137007357,137007358,50,+,CGAATTTCTGATGAAATTACAGGTGCAGGGAAATGCAGAATTAGAAATAT,"Intron (Mgmt-201/Mgmt, intron 2 of 4)",7,136894614,137130266,235653,1,Mgmt-201,112743,Mgmt-201,Mgmt,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,16,17314,ENSMUSG00000054612,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4982,cg23204033,0.00000251,0.00000171,1.466815987,0.143439827,gain,ns,-0.00000093,0.00000291,-0.319667778,0.749435512,neg,ns,0.002645178,0.000852174,3.104035591,0.002085085,pos,ns,2.680876233,-0.0000405,0.0000293,-1.381979511,0.167972998,neg,ns,0.958071139,U2af1,U2af1_Exon,17,31651687,31651736,31651687,31651688,50,-,CGGTAAATGTTCAAGAGGGCAATGGTCTGAAATACAAAACGCAACAACTT,"Exon (U2af1-201/U2af1, exon 3 of 8)",17,31647081,31658769,11689,2,U2af1-202,7033,U2af1-202;U2af1-201;U2af1-208;U2af1-209;U2af1-206;U2af1-207;U2af1-205;U2af1-203;U2af1-204,U2af1;U2af1;U2af1;U2af1;U2af1;U2af1;U2af1;U2af1;U2af1,0;0;0;0;-2375;0;0;0;6967,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,108121,ENSMUSG00000061613,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
898,cg23720169,0.0000149,0.00000579,2.576382863,0.010446547,gain,ns,-0.00000314,0.00000984,-0.319660812,0.749440788,neg,ns,-0.001954461,0.002881449,-0.678291005,0.498093195,neg,ns,0.302689391,0.0000551,0.0000991,0.555580162,0.578898615,pos,ns,0.118112522,Osr1,Osr1_Exon,12,9580576,9580625,9580576,9580577,50,-,CGCTACACTCACAGGTGAAGGAGCTCAAAACCTCCAAGATCAAATGCTAA,"Exon (Osr1-201/Osr1, exon 3 of 3)",12,9574441,9581500,7060,1,Osr1-201,6135,Osr1-202;Osr1-201,Osr1;Osr1,10460;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,23967,ENSMUSG00000048387,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
19562,cg14233818,0.0000122,0.00000248,4.927126834,0.00000136,gain,yes,0.00000134,0.00000421,0.319468637,0.749586349,pos,ns,0.000824788,0.001233126,0.668859412,0.504082936,pos,ns,0.297498004,0.0000633,0.0000424,1.493813378,0.136241525,pos,ns,0.048756859,Sox14,Sox14_Intergenic_downstream,9,99869140,99869189,99869140,99869141,50,-,CGATATTCAAAAAAGTATATAATCTCCATATGCCGCTCAATGGAGGATCC,Distal Intergenic,9,99874220,99875655,1436,2,Sox14-202,6515,Sox14-201,Sox14,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,12,18,20669,ENSMUSG00000053747,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
23692,cg15660194,-0.00000942,0.00000506,-1.861128369,0.06367252,loss,ns,0.00000275,0.0000086,0.319461637,0.749591652,pos,ns,-0.003454536,0.002520291,-1.370689483,0.171463392,neg,ns,0.76582859,-0.0000337,0.0000867,-0.388551628,0.697874572,neg,ns,0.90463714,Mga,Mga_Exon,2,119903219,119903268,119903267,119903268,50,-,AACAATACACTGGACCAAGAAGGGCATATCATCTTGCACTCTATGCATCG,"Exon (Mga-201/Mga, exon 2 of 25)",2,119897228,119967749,70522,1,Mga-201,5991,Mga-201;Mga-202;Mga-203;Mga-204;Mga-210;Mga-206;Mga-215,Mga;Mga;Mga;Mga;Mga;Mga;Mga,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,9,29808,ENSMUSG00000033943,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23073,cg02729652,-0.0000379,0.00000941,-4.029675585,0.0000703,loss,ns,0.00000511,0.000016,0.31942202,0.74962166,pos,ns,0.028764535,0.004684348,6.140563792,2.52E-09,pos,ns,8.599397621,-0.002039822,0.000161094,-12.6622835,6.69E-30,neg,yes,0.909349802,Rnf220,Rnf220_threeUTR,4,117276497,117276546,117276497,117276498,50,+,CGAGATAAACTGATCAACCACAACGGGCTGGAATGAATTTATGACAACAC,3' UTR,4,117271463,117497052,225590,2,Rnf220-201,220506,Rnf220-201;Rnf220-203;Rnf220-212;Rnf220-202;Rnf220-205;Rnf220-214;Rnf220-211;Rnf220-209;Rnf220-213,Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,152,66743,ENSMUSG00000028677,conserved gene but different region,4,117276354,117276521,168,*,168,15,0.654761905,0.85106383,0.089285714,5.14E-11,CpGisland,TRUE,U10,Tr-S
15746,cg07893689,-0.0000062,0.0000034,-1.826422364,0.068748296,loss,ns,-0.00000184,0.00000577,-0.319305559,0.749709877,neg,ns,-0.001904349,0.001689938,-1.126875323,0.260666711,neg,ns,0.583914427,0.0000183,0.0000581,0.31522755,0.752800979,pos,ns,0.919345516,Pkdcc,Pkdcc_Intergenic_upstream,17,83129523,83129572,83129571,83129572,50,+,AATTAATCCTCTAAAGAGCATGTTCATTATTCTAATTTAATTGTGCTTCG,Distal Intergenic,17,83215292,83225070,9779,1,Pkdcc-204,-85720,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,10,106522,ENSMUSG00000024247,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16542,cg04103518,0.00000793,0.00000528,1.502478721,0.133991474,gain,ns,0.00000286,0.00000896,0.31925877,0.74974532,pos,ns,0.006723441,0.002626294,2.560048676,0.01093963,pos,ns,1.960997355,-0.000207239,0.0000903,-2.294547178,0.022427188,neg,ns,0.898847087,Camkmt,Camkmt_Intron,17,85393887,85393936,85393935,85393936,50,+,CTGCTAATGTTTTGCCTGCATTATTACACCAACAAACATGATCCAGAGCG,"Intron (Camkmt-201/Camkmt, intron 5 of 10)",17,85090552,85458588,368037,1,Camkmt-201,303335,Camkmt-201,Camkmt,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,41,44,73582,ENSMUSG00000071037,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23673,cg22589574,0.00000308,0.00000237,1.30408768,0.193171153,gain,ns,-0.00000128,0.00000402,-0.319214933,0.749778528,neg,ns,0.000972127,0.001177379,0.825669994,0.409626273,pos,ns,0.387612196,-0.0000298,0.0000405,-0.736762114,0.461824228,neg,ns,0.893826279,Ptbp2,Ptbp2_Intron,3,119724706,119724755,119724706,119724707,50,+,CGGAGATGAACAGATCATCCATAACGAAGGGTGGTTCCCGCAGAATGGTG,"Intron (Ptbp2-201/Ptbp2, intron 9 of 13)",3,119718742,119783388,64647,2,Ptbp2-201,58633,Ptbp2-201;Ptbp2-213;Ptbp2-208;Ptbp2-206;Ptbp2-204;Ptbp2-211;Ptbp2-202,Ptbp2;Ptbp2;Ptbp2;Ptbp2;Ptbp2;Ptbp2;Ptbp2,0;0;0;0;0;-319;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,13,56195,ENSMUSG00000028134,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26507,cg05221813,0.0000249,0.0000254,0.982365813,0.326685719,gain,ns,0.0000138,0.0000431,0.319154524,0.749824289,pos,ns,-0.015511147,0.012624543,-1.228650213,0.220134882,neg,ns,0.657311135,0.000624842,0.000434157,1.439208272,0.151100466,pos,ns,0.625066475,Caprin2,Caprin2_Exon,6,148848221,148848270,148848221,148848222,50,+,CGTCTGTGCTGGGTAAAAGGCAAGGCTACCATTGCTTACTTGAATAGTTC,"Exon (Caprin2-202/Caprin2, exon 16 of 19)",6,148842492,148896237,53746,2,Caprin2-202,47967,Caprin2-209;Caprin2-202;Caprin2-204;Caprin2-201;Caprin2-205;Caprin2-207;Caprin2-208,Caprin2;Caprin2;Caprin2;Caprin2;Caprin2;Caprin2;Caprin2,-4567;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,232560,ENSMUSG00000030309,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22445,cg05697812,-0.0000288,0.00000705,-4.08764032,0.0000556,loss,ns,0.00000382,0.000012,0.319151318,0.749826718,pos,ns,-0.003941229,0.003507481,-1.123663703,0.262025119,neg,ns,0.581657072,0.0000995,0.000120622,0.824887616,0.410069673,pos,ns,0.765365854,Fam222a,Fam222a_Intron,5,114571832,114571881,114571832,114571833,50,+,CGCCGCCCTGATTGGTTGCTAAGTGATTTGCATCCAAGGTAATCACTTTT,"Intron (Fam222a-201/Fam222a, intron 1 of 2)",5,114568016,114613220,45205,1,Fam222a-201,3816,Fam222a-201;Fam222a-202,Fam222a;Fam222a,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,16,433940,ENSMUSG00000041930,conserved gene and region,5,114571569,114571856,288,*,288,32,0.645833333,1.067531565,0.111111111,3.20E-26,CpGisland,TRUE,NA,NRS
2943,cg23090567,0.0000265,0.00000438,6.042703451,4.34E-09,gain,yes,0.00000237,0.00000744,0.319005199,0.749937411,pos,ns,-0.001470743,0.002179179,-0.674907014,0.500237887,neg,ns,0.300823419,-0.0000268,0.0000749,-0.357228201,0.721164038,neg,ns,0.79586992,Gm11880,Gm11880_Intergenic_downstream,4,22103106,22103155,22103154,22103155,50,+,AGCGGGCCCAAGGGCAGAGGTTCTGTATATCATTCAAAGACCATCTGTCG,Distal Intergenic,4,22117134,22117532,399,2,Gm11880-201,14377,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,11,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25213,cg15658846,0.00000411,0.00000241,1.704510275,0.089287736,gain,ns,-0.00000131,0.00000409,-0.319001147,0.749940481,neg,ns,0.007430781,0.001198911,6.197939767,1.82E-09,pos,ns,8.739723204,-0.0000919,0.0000412,-2.229096071,0.026523957,neg,ns,0.034773123,Arid1a,Arid1a_Intron,4,133729824,133729873,133729824,133729825,50,-,CGAAGCCACACCGCCCCTGCCAGGAAGGTTAGTGCTCGTAATCTCTGGCC,"Intron (Arid1a-202/Arid1a, intron 1 of 19)",4,133679008,133753611,74604,2,Arid1a-202,23738,Arid1a-202;Arid1a-205;Arid1a-201;Arid1a-203,Arid1a;Arid1a;Arid1a;Arid1a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,31,93760,ENSMUSG00000007880,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U5,En-Sd
2103,cg03846926,0.0000291,0.0000258,1.13070929,0.259051491,gain,ns,-0.000014,0.0000438,-0.318947735,0.749980945,neg,ns,0.021092099,0.01282608,1.64446958,0.101092891,pos,ns,0.995279385,0.000102646,0.000441088,0.232710639,0.816139674,pos,ns,0.789864396,Skida1,Skida1_Promoter,2,18048822,18048871,18048822,18048823,50,-,CGTCCGGAGACACCTTCATCAATTAATTCCCCTAAAGCCAGCGCTGATTG,Promoter (<=1kb),2,18044083,18049051,4969,2,Skida1-202,180,Skida1-205;Skida1-202;Skida1-201;Skida1-203;Skida1-204,Skida1;Skida1;Skida1;Skida1;Skida1,0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,12,31,72668,ENSMUSG00000054074,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
8746,cg23217865,-0.00000519,0.00000502,-1.033882037,0.301997178,loss,ns,0.00000272,0.00000854,0.31889406,0.750021609,pos,ns,-0.000782463,0.002500643,-0.312904796,0.754563394,neg,ns,0.122304267,-0.00016146,0.000086,-1.877503808,0.061387876,neg,ns,0.868083951,Dscaml1,Dscaml1_threeUTR,9,45683709,45683758,45683709,45683710,50,+,CGAGAGCAAGGAATTCATGAGCTCCCTGCAGATCTCTAGCGTCTCCCTCA,3' UTR,9,45430291,45753262,322972,1,Dscaml1-211,253418,Dscaml1-211;Dscaml1-201;Dscaml1-210;Dscaml1-205,Dscaml1;Dscaml1;Dscaml1;Dscaml1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,32,114873,ENSMUSG00000032087,conserved gene but different region,9,45683580,45683834,255,*,255,15,0.611764706,0.63538206,0.058823529,1.87E-08,CpGisland,TRUE,U11,Tr-P
25077,cg09205502,-0.0000105,0.00000426,-2.458789305,0.014486938,loss,ns,0.00000231,0.00000723,0.318868034,0.750041326,pos,ns,-0.000243087,0.00211912,-0.1147113,0.908748219,neg,ns,0.041556427,-0.0000835,0.0000729,-1.146331437,0.252542103,neg,ns,0.933451332,Nfasc,Nfasc_Exon,1,132582971,132583020,132583019,132583020,50,-,TGGCCAGGCCAGGTCCCCTCTCACCTGTACTGGTCATAAAGGTGATGACG,"Exon (Nfasc-202/Nfasc, exon 27 of 30)",1,132564690,132741757,177068,2,Nfasc-202,158737,Nfasc-202;Nfasc-201;Nfasc-207;Nfasc-203;Nfasc-205;Nfasc-204,Nfasc;Nfasc;Nfasc;Nfasc;Nfasc;Nfasc,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,10,269116,ENSMUSG00000026442,conserved gene and region,1,132583019,132583077,59,*,59,7,0.610169492,1.311111111,0.118644068,0.00000415,CpGisland,TRUE,U11,Tr-P
27093,cg25950972,-0.0000115,0.00000321,-3.580714885,0.000397633,loss,ns,-0.00000174,0.00000546,-0.318857509,0.750049299,neg,ns,0.011353415,0.001599283,7.099065492,8.61E-12,pos,yes,11.06504879,-0.000311919,0.000055,-5.671339892,3.25E-08,neg,yes,0.916254964,Srsf11,Srsf11_threeUTR,3,158023339,158023388,158023339,158023340,50,-,CGACTCGTGTCGGCTGCTTCACTATAAAGCACACAGAAAAATCAAGATAC,3' UTR,3,158010473,158036639,26167,2,Srsf11-204,13251,Srsf11-204;Srsf11-213;Srsf11-202;Srsf11-207;Srsf11-201;Srsf11-217;Srsf11-218;Srsf11-206;Srsf11-209;Srsf11-210;Srsf11-212;Srsf11-203;Srsf11-208;Srsf11-215,Srsf11;Srsf11;Srsf11;Srsf11;Srsf11;Srsf11;Srsf11;Srsf11;Srsf11;Srsf11;Srsf11;Srsf11;Srsf11;Srsf11,0;0;0;-199;0;-1335;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,8,69207,ENSMUSG00000055436,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14760,cg06418113,0.0000211,0.00000677,3.116383152,0.002002276,gain,ns,0.00000367,0.0000115,0.318846401,0.750057715,pos,ns,0.011997871,0.003370751,3.559405636,0.000429938,pos,ns,3.366594633,-0.00044576,0.00011592,-3.845413296,0.000146073,neg,ns,0.148225244,Rnf165,Rnf165_Exon,18,77563399,77563448,77563399,77563400,50,-,CGGAGGCAGAAGGGTCACAGCGCACACAGCAGCGAGTTGACCATTCACTG,"Exon (Rnf165-205/Rnf165, exon 1 of 1)",18,77456110,77565136,109027,2,Rnf165-201,1688,Rnf165-201;Rnf165-202;Rnf165-204;Rnf165-205;Rnf165-203,Rnf165;Rnf165;Rnf165;Rnf165;Rnf165,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,21,225743,ENSMUSG00000025427,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
23926,cg18654555,-0.0000841,0.0000126,-6.689486514,1.05E-10,loss,yes,0.00000681,0.0000214,0.318607929,0.750238391,pos,ns,-0.016244621,0.0062605,-2.594780057,0.009915058,neg,ns,2.003704743,0.00014578,0.000215298,0.677106568,0.498843303,pos,ns,0.863815695,Rlf,Rlf_Exon,4,121150835,121150884,121150883,121150884,50,-,AATCCATCCAAACTGGGTTCAATTAAGAATTCTGTAAGCTGACAGGCTCG,"Exon (Rlf-203/Rlf, exon 6 of 6)",4,121145373,121188534,43162,2,Rlf-203,37650,Rlf-203;Rlf-201,Rlf;Rlf,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,109263,ENSMUSG00000049878,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24423,cg15100168,-0.000023,0.0000064,-3.599131131,0.000371564,loss,ns,-0.00000346,0.0000109,-0.318532359,0.750295649,neg,ns,-0.003030877,0.003182988,-0.952211053,0.341731793,neg,ns,0.466314615,-0.0000714,0.000109463,-0.652072146,0.514837808,neg,ns,0.90272354,Grik3,Grik3_Intron,4,125664205,125664254,125664205,125664206,50,-,CGATTAGCAGCCGAGAGAGCTTGTGAATTGGCTGTCTGGACATTTCCAGT,"Intron (Grik3-201/Grik3, intron 9 of 15)",4,125490700,125714173,223474,1,Grik3-201,173505,Grik3-201,Grik3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,14,18,14807,ENSMUSG00000001985,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27572,cg07391430,-0.00000258,0.00000159,-1.62157819,0.105910296,loss,ns,0.00000086,0.0000027,0.318348406,0.750435032,pos,ns,0.00000957,0.00079127,0.01209982,0.990353759,pos,ns,0.004209646,-0.0000506,0.0000272,-1.860140862,0.063812521,neg,ns,0.957973737,Ddr2,Ddr2_Exon,1,169987041,169987090,169987041,169987042,50,-,CGGAGCATTTTCACAGCCACCAGGACAGGCTGGTTGGCACTGACATCTAG,"Exon (Ddr2-205/Ddr2, exon 14 of 18)",1,169972307,170110561,138255,2,Ddr2-205,123471,Ddr2-205;Ddr2-202;Ddr2-201,Ddr2;Ddr2;Ddr2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,4,18214,ENSMUSG00000026674,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7880,cg06836458,-0.00000523,0.0000118,-0.442374361,0.658526809,loss,ns,-0.00000639,0.0000201,-0.318324176,0.750453392,neg,ns,0.006947037,0.005881667,1.181133998,0.238454859,pos,ns,0.622593823,-0.000339833,0.00020227,-1.680095563,0.093946106,neg,ns,0.705303533,Runx2,Runx2_Intron,17,44592312,44592361,44592312,44592313,50,+,CGTTTGCTAACAATAGAACTGGCTTTCCCATTTGCCAAGATCAATGTTGA,"Intron (Runx2-212/Runx2, intron 5 of 5)",17,44495987,44736176,240190,2,Runx2-212,143815,Runx2-212;Runx2-214,Runx2;Runx2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,20,12393,ENSMUSG00000039153,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1453,cg12036377,0.000278791,0.0000149,18.7462238,6.01E-53,gain,yes,0.00000804,0.0000253,0.31820505,0.75054366,pos,ns,-0.00418598,0.007401869,-0.565530055,0.572122369,neg,ns,0.242511072,0.0010493,0.00025455,4.122179744,0.0000482,pos,ns,0.509622134,C1ql3,C1ql3_fiveUTR,2,13011697,13011746,13011697,13011698,50,+,CGGAGCAATTTATAGGCACCCAAGGCACAGAGGAAGGGGAGCCGCTTTGG,Promoter (<=1kb),2,13003457,13011806,8350,2,C1ql3-201,60,C1ql3-201,C1ql3,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,9,227580,ENSMUSG00000049630,conserved gene but different region,2,13011690,13011698,9,*,9,4,1,1.8,0.444444444,0.00000224,CpGisland,TRUE,U3,Pr-B
21185,cg19895248,0.0000145,0.00000225,6.439232699,4.57E-10,gain,yes,0.00000122,0.00000382,0.318177904,0.75056423,pos,ns,0.003659083,0.001119743,3.267787468,0.001205587,pos,ns,2.918801545,-0.000117953,0.0000385,-3.063081864,0.002382862,neg,ns,0.040578386,Mpped2,Mpped2_Intergenic_upstream,2,106650373,106650422,106650421,106650422,50,+,GCGCAGCAGCCAATCACGAGTCAAGTCTGAACAGTGACCTTGCTGAGTCG,Distal Intergenic,2,106693269,106868356,175088,1,Mpped2-202,-42847,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,33,77015,ENSMUSG00000016386,conserved gene and region,2,106650342,106650531,190,*,190,11,0.547368421,0.791666667,0.057894737,0.00000285,CpGisland,TRUE,U2,Pr-W
987,cg05921631,-0.0000338,0.0000134,-2.520160081,0.012232148,loss,ns,0.00000725,0.0000228,0.318068994,0.750646761,pos,ns,-0.003386304,0.006678116,-0.507074777,0.612462861,neg,ns,0.212920241,-0.000237719,0.00022966,-1.035093693,0.301431932,neg,ns,0.604545208,Nt5c1b,Nt5c1b_threeUTR,12,10377226,10377275,10377274,10377275,50,-,ACTGATGACTAATAACCATGCCCAAGTGGGAGTGCGGCTTATAAACAGCG,3' UTR,12,10369973,10390170,20198,1,Nt5c1b-201,7253,Nt5c1b-203;Nt5c1b-201;Nt5c1b-204;Nt5c1b-205;Nt5c1b-211;Nt5c1b-215;Nt5c1b-217;Nt5c1b-206;Nt5c1b-208;Nt5c1b-210;Nt5c1b-213;Nt5c1b-214;Nt5c1b-218;Nt5c1b-219;Nt5c1b-202;Nt5c1b-220;Nt5c1b-212;Nt5c1b-209;Nt5c1b-216;Nt5c1b-207,Nt5c1b;Nt5c1b;Nt5c1b;Nt5c1b;Nt5c1b;Nt5c1b;Nt5c1b;Nt5c1b;Nt5c1b;Nt5c1b;Nt5c1b;Nt5c1b;Nt5c1b;Nt5c1b;Nt5c1b;Nt5c1b;Nt5c1b;Nt5c1b;Nt5c1b;Nt5c1b,7253;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,1,70881,ENSMUSG00000020622,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3220,cg22981423,0.0000728,0.0000149,4.885714407,0.00000166,gain,yes,-0.00000805,0.0000253,-0.318039801,0.750668883,neg,ns,0.004311312,0.007417107,0.581266046,0.561483542,pos,ns,0.250662969,0.000415039,0.000255074,1.627134876,0.104724417,pos,ns,0.727554773,Gm20954,Gm20954_Exon,1,23272275,23272324,23272323,23272324,50,-,GTAAACATCCTCGACTGGAAGCTGTGAAGCCACAGATGGGCTTTCAGTCG,"Exon (Mir30a-201/Mir30a-201, exon 1 of 1)",1,23345956,23346599,644,2,Gm20954-201,74324,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,100418001,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10791,cg17710501,-0.0000528,0.0000128,-4.126521429,0.0000474,loss,ns,0.00000691,0.0000217,0.317934816,0.750748443,pos,ns,0.004362878,0.006365666,0.685376601,0.493618487,pos,ns,0.306608584,-0.000510447,0.000218915,-2.331718275,0.02035593,neg,ns,0.765808861,Kcnj3,Kcnj3_Exon,2,55446891,55446940,55446939,55446940,50,+,TACAGGGGCAGATCAACTTTTTCTTGTGTCCCCCCTCACAATTTGCCACG,"Exon (Kcnj3-201/Kcnj3, exon 3 of 4)",2,55435970,55598145,162176,1,Kcnj3-201,10921,Kcnj3-201;Kcnj3-203;Kcnj3-202,Kcnj3;Kcnj3;Kcnj3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,6,16519,ENSMUSG00000026824,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17587,cg05743479,0.0000179,0.0000328,0.54480548,0.586279014,gain,ns,-0.0000177,0.0000557,-0.31787634,0.750792758,neg,ns,0.030159328,0.016331091,1.846743033,0.065737329,pos,ns,1.182187947,-0.001434365,0.000561625,-2.553955914,0.01112881,neg,ns,0.753159328,Gm49612,Gm49612_Promoter,16,91140602,91140651,91140602,91140603,50,+,CGACAGGTGGCCTACTAGACAGCTCAATTAAGCTGCTCATTAAACACACG,Promoter (5-6kb),16,91135275,91135476,202,2,Gm49612-201,-5126,NA,NA,NA,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,5,5,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
20166,cg14873499,-0.00000341,0.00000989,-0.34449983,0.730704011,loss,ns,0.00000534,0.0000168,0.317802817,0.750848478,pos,ns,0.005374025,0.004924811,1.091214525,0.276025891,pos,ns,0.55905018,-0.000147506,0.000169364,-0.870943736,0.384458828,neg,ns,0.81959958,Gm49473,Gm49473_Intergenic_downstream,15,102777307,102777356,102777307,102777308,50,-,CGTGTGAATTATTGCACAATAAATTCATGCCCTGTTGTGTCTTACAGCTT,Distal Intergenic,15,102795121,102795371,251,2,Gm49473-201,18064,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,12,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4154,cg13675611,0.0000165,0.00000571,2.892345346,0.004094327,gain,ns,0.00000308,0.00000969,0.317741394,0.750895029,pos,ns,-0.000169637,0.002840271,-0.05972559,0.952412674,neg,ns,0.021174834,-0.0000983,0.0000977,-1.006413525,0.315001594,neg,ns,0.842999893,Gm12074,Gm12074_Intergenic_upstream,11,26981614,26981663,26981662,26981663,50,+,AATGAAGATCCCTGACAATTACTGAGGGCTGGTTTCTCAATGAGCACACG,Distal Intergenic,11,27051697,27051915,219,1,Gm12074-201,-70034,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,10,100042367,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6968,cg21068638,-0.0000276,0.00000745,-3.707143641,0.000248239,loss,ns,0.00000402,0.0000127,0.317731043,0.750902873,pos,ns,-0.007397896,0.003707509,-1.995381719,0.046876183,neg,ns,1.329047755,-0.0000975,0.000127501,-0.765034088,0.444833254,neg,ns,0.880279634,Tmem178b,Tmem178b_Exon,6,40245723,40245772,40245723,40245724,50,-,CGAGGACCAACTACCCTAAATCCAGACCCGAGAATGGGACAGTGTGCTAA,"Exon (Tmem178b-204/Tmem178b, exon 4 of 4)",6,39871461,40245772,374312,1,Tmem178b-204,374262,Tmem178b-204;Tmem178b-203;Tmem178b-201;Tmem178b-202,Tmem178b;Tmem178b;Tmem178b;Tmem178b,0;0;0;-3129,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,7,434008,ENSMUSG00000057716,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5900,cg02766132,-0.00000367,0.00000158,-2.319398283,0.021023048,loss,ns,0.000000853,0.00000269,0.317710128,0.750918725,pos,ns,0.000349902,0.000786849,0.444687404,0.65685598,pos,ns,0.182529842,-0.0000404,0.0000271,-1.492682845,0.136537229,neg,ns,0.031112732,Rab14,Rab14_fiveUTR,2,35200988,35201037,35200988,35200989,50,+,CGCTCCCTGCACAGGGTTTCCTGTCACCCTCGCAATGGGCCGGACCACAA,Promoter (<=1kb),2,35180205,35201120,20916,2,Rab14-201,83,Rab14-201;Rab14-202;Rab14-213;Rab14-211;Rab14-206;Rab14-207;Rab14-210;Rab14-203,Rab14;Rab14;Rab14;Rab14;Rab14;Rab14;Rab14;Rab14,0;0;0;-16;-199;-41;-6;-10,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,3,68365,ENSMUSG00000026878,conserved gene but different region,2,35200791,35201385,595,*,595,58,0.660504202,0.899353695,0.097478992,1.52E-43,CpGisland,TRUE,U1,Pr-A
18673,cg20246949,-0.00000616,0.00000428,-1.439423618,0.151039523,loss,ns,0.00000231,0.00000727,0.317531895,0.751053809,pos,ns,0.001295542,0.002131325,0.607857565,0.543726991,pos,ns,0.264619108,-0.000151118,0.0000733,-2.061741078,0.040065705,neg,ns,0.905304663,Tenm4,Tenm4_Exon,7,96702660,96702709,96702708,96702709,50,-,ATTCCTAGGGACATTGCAGGACAACCTCATTGAGATGGACATTCTCGGCG,"Exon (Tenm4-201/Tenm4, exon 9 of 33)",7,96171246,96908569,737324,1,Tenm4-201,531414,Tenm4-201;Tenm4-203;Tenm4-202;Tenm4-207,Tenm4;Tenm4;Tenm4;Tenm4,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,17,26,23966,ENSMUSG00000048078,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24239,cg16299574,-0.0000035,0.00000211,-1.659220746,0.098082616,loss,ns,0.00000114,0.00000359,0.317530177,0.751055111,pos,ns,0.000467821,0.001050293,0.445419959,0.656327177,pos,ns,0.182879612,-0.0000209,0.0000361,-0.577802578,0.563816861,neg,ns,0.965149734,Gm12902,Gm12902_Intergenic_downstream,4,124087355,124087404,124087355,124087356,50,-,CGGGTGTCAAAAACATCAGAAAAAATAATAACAGCAGAGACACCTTGACT,Distal Intergenic,4,123926234,123926555,322,1,Gm12902-201,161170,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,34,34,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9088,cg19751323,-0.00000782,0.00000289,-2.708375834,0.007136854,loss,ns,-0.00000156,0.0000049,-0.317505823,0.751073569,neg,ns,-0.001495308,0.001436867,-1.040673017,0.298838277,neg,ns,0.524563777,0.0000781,0.0000494,1.580821753,0.114938532,pos,ns,0.915164357,Cnnm2,Cnnm2_Intron,19,46848643,46848692,46848643,46848644,50,-,CGCCTCAGTGGAATGGAAACTTCATTTTGAGTCTAATATTAGACCTTGCT,"Intron (Cnnm2-202/Cnnm2, intron 1 of 7)",19,46761596,46880192,118597,1,Cnnm2-202,87047,Cnnm2-202;Cnnm2-201;Cnnm2-203,Cnnm2;Cnnm2;Cnnm2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,8,94219,ENSMUSG00000064105,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U5,En-Sd
22511,cg26009417,-0.00000202,0.00000229,-0.885133039,0.376770913,loss,ns,0.00000123,0.00000388,0.317164102,0.751332586,pos,ns,0.000291887,0.001137477,0.256609354,0.79765057,pos,ns,0.09818732,0.0000362,0.0000391,0.925200475,0.355581289,pos,ns,0.957038173,Rps4l-ps,Rps4l-ps_Intergenic_downstream,7,114897059,114897108,114897059,114897060,50,+,CGATGTTAATTGCACTGATGGCTCGTTATTTGGGGAATTGCCATGCATTT,Distal Intergenic,7,114926959,114927726,768,2,Rps4l-ps-201,30618,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,13,19,627967,NA,mapped to different genes,7,114896968,114897083,116,*,116,9,0.50862069,1.202764977,0.077586207,0.00000318,CpGisland,TRUE,U15,NS
13030,cg21509426,-0.000101995,0.0000244,-4.182991847,0.0000375,loss,ns,0.0000131,0.0000414,0.317144714,0.751347282,pos,ns,0.099798903,0.012135847,8.223480888,5.49E-15,pos,yes,14.26024497,-0.001984801,0.000417351,-4.755714131,0.00000303,neg,ns,0.773441076,Rhobtb1,Rhobtb1_threeUTR,10,69266236,69266285,69266284,69266285,50,+,AATCATGTGAAAAGCATGTGGTATCCAGAAATCAAGCACTTTTGCCCTCG,3' UTR,10,69208552,69289900,81349,1,Rhobtb1-205,57684,Rhobtb1-205;Rhobtb1-201;Rhobtb1-207;Rhobtb1-210;Rhobtb1-203;Rhobtb1-202;Rhobtb1-211;Rhobtb1-212,Rhobtb1;Rhobtb1;Rhobtb1;Rhobtb1;Rhobtb1;Rhobtb1;Rhobtb1;Rhobtb1,0;0;0;0;53152;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,3,69288,ENSMUSG00000019944,conserved gene but different region,10,69266284,69266389,106,*,106,10,0.660377359,0.871710526,0.094339623,0.000000111,CpGisland,TRUE,NA,NRS
6115,cg22449059,0.00000508,0.00000428,1.185078444,0.236894114,gain,ns,-0.00000231,0.00000728,-0.317135994,0.751353892,neg,ns,0.001856704,0.002132343,0.870734232,0.384573057,pos,ns,0.415021145,0.0000187,0.0000733,0.254861591,0.798998994,pos,ns,0.915666666,Rpl17-ps9,Rpl17-ps9_Intergenic_upstream,7,36101309,36101358,36101309,36101310,50,-,CGGCTCCTAGAGCTATAATAGAATGGCTTCGACATGCTCATCTGTGGCTG,Distal Intergenic,7,36118274,36118828,555,1,Rpl17-ps9-201,-16965,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,14,22,100043872,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18939,cg23237483,-0.00000648,0.00000354,-1.833326263,0.067712802,loss,ns,0.00000191,0.00000601,0.31713565,0.751354153,pos,ns,0.00151429,0.001760422,0.8601859,0.390351322,pos,ns,0.408544346,-0.000149385,0.0000605,-2.467502795,0.014145859,neg,ns,0.92510741,Dach1,Dach1_Intron,14,97981006,97981055,97981006,97981007,50,-,CGCTATGAGTTTAACCGAAAAATAGAAGAAGAAAAACAGCCAAGAAACTG,"Intron (Dach1-201/Dach1, intron 2 of 10)",14,97786853,98169543,382691,2,Dach1-201,188488,Dach1-201;Dach1-202;Dach1-203,Dach1;Dach1;Dach1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,76,13134,ENSMUSG00000055639,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12091,cg19449076,-0.00000941,0.00000674,-1.395817349,0.163768379,loss,ns,0.00000363,0.0000115,0.316954438,0.751491521,pos,ns,-0.004106562,0.003355726,-1.223747748,0.221976706,neg,ns,0.653692597,-0.0000193,0.000115403,-0.167073275,0.867421322,neg,ns,0.865845676,Efna5,Efna5_Intron,17,62810756,62810805,62810756,62810757,50,-,CGATATATATTCAATTTTTACAAGCACTGAGTGAGCAGAAAACTGAAAAT,"Intron (Efna5-201/Efna5, intron 1 of 4)",17,62604184,62881317,277134,2,Efna5-201,70512,Efna5-201;Efna5-202,Efna5;Efna5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,21,13640,ENSMUSG00000048915,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22245,cg21118804,-0.0000179,0.00000235,-7.652328706,2.52E-13,loss,yes,-0.00000126,0.00000398,-0.316868137,0.751556944,neg,ns,-0.001122915,0.001167242,-0.962023762,0.336787453,neg,ns,0.472644097,-0.00000637,0.0000401,-0.158641237,0.874054834,neg,ns,0.942252265,Mical2,Mical2_Exon,7,112345269,112345318,112345269,112345270,50,+,CGGAATAGGGGCTGCAGCTGAAGTCCTGGTCAATCTGTACATGAATGATC,"Exon (Mical2-202/Mical2, exon 20 of 24)",7,112225856,112355194,129339,1,Mical2-203,119413,Mical2-203;Mical2-207;Mical2-202;Mical2-210;Mical2-209;Mical2-212;Mical2-213,Mical2;Mical2;Mical2;Mical2;Mical2;Mical2;Mical2,0;0;0;0;-1411;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,3,320878,ENSMUSG00000038244,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23733,cg11421449,0.000112793,0.0000214,5.259962436,0.000000269,gain,yes,-0.0000115,0.0000364,-0.316748122,0.751647927,neg,ns,0.087468583,0.010672706,8.195539466,6.65E-15,pos,yes,14.17724118,-0.002197214,0.000367033,-5.986412495,5.93E-09,neg,yes,0.543285685,Bahcc1,Bahcc1_Intron,11,120241529,120241578,120241529,120241530,50,-,CGGGAACTTGGTTCAAGCTAATAAAAATAATAATTTACTAGCCACTGAGC,"Intron (Bahcc1-203/Bahcc1, intron 2 of 27)",11,120232947,120292282,59336,1,Bahcc1-203,8582,Bahcc1-203;Bahcc1-201;Bahcc1-204;Bahcc1-202,Bahcc1;Bahcc1;Bahcc1;Bahcc1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,11,268515,ENSMUSG00000039741,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
26288,cg10586028,-0.000000807,0.00000268,-0.300748829,0.763807635,loss,ns,0.00000144,0.00000456,0.316721406,0.751668181,pos,ns,0.004255275,0.001334864,3.187796192,0.00157995,pos,ns,2.801356778,-0.000184597,0.0000459,-4.021204063,0.0000728,neg,ns,0.923886801,Cdk8,Cdk8_Exon,5,146283620,146283669,146283668,146283669,50,-,TTTCCACAGAAACCTGCTAATATTTTAGTTATGGGTGAAGGTCCTGAGCG,"Exon (Cdk8-205/Cdk8, exon 5 of 13)",5,146231230,146302874,71645,1,Cdk8-207,52390,Cdk8-207;Cdk8-205;Cdk8-206;Cdk8-201;Cdk8-209,Cdk8;Cdk8;Cdk8;Cdk8;Cdk8,0;0;0;0;-2507,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,6,264064,ENSMUSG00000029635,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2742,cg10677710,0.000056,0.0000079,7.084481977,9.43E-12,gain,yes,0.00000425,0.0000134,0.316618883,0.751745908,pos,ns,0.004747472,0.003934193,1.206720604,0.228459793,pos,ns,0.641190221,-0.0000672,0.000135297,-0.496812741,0.619673239,neg,ns,0.123423831,Klhl14,Klhl14_fiveUTR,18,21654654,21654703,21654654,21654655,50,-,CGTGTGACAAATTATGCTACCAAGAAACAACACATCATTATCCTTGGGCC,Promoter (<=1kb),18,21550379,21654718,104340,2,Klhl14-202,15,Klhl14-201;Klhl14-202,Klhl14;Klhl14,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,38,225266,ENSMUSG00000042514,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
5134,cg14235933,-0.00000863,0.00000415,-2.080187107,0.038329538,loss,ns,0.00000223,0.00000705,0.316565906,0.751786072,pos,ns,-0.002320614,0.002064885,-1.123846275,0.261947766,neg,ns,0.581785301,-0.0000494,0.000071,-0.696218571,0.48681362,neg,ns,0.549631379,Pik3ca,Pik3ca_Exon,3,32456128,32456177,32456128,32456129,50,+,CGTATTATGGAAAATATCTGGCAAAATCAAGGTCTTGATCTTCGGTAGGT,"Exon (Pik3ca-203/Pik3ca, exon 17 of 21)",3,32397671,32466107,68437,1,Pik3ca-203,58457,Pik3ca-203;Pik3ca-201;Pik3ca-202,Pik3ca;Pik3ca;Pik3ca,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,4,18706,ENSMUSG00000027665,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20198,cg18660511,0.0000141,0.00000298,4.75210294,0.00000309,gain,ns,-0.0000016,0.00000506,-0.316521312,0.751819882,neg,ns,0.005550127,0.001481033,3.747470847,0.000213012,pos,ns,3.671596637,-0.0000305,0.0000509,-0.598299793,0.550076788,neg,ns,0.061702078,C1ql1,C1ql1_Promoter,11,102948770,102948819,102948770,102948771,50,-,CGGATTCTCCCCGCTTCGCTGGAGTGGAAAATAACGGCTTCAAACTTTGC,Promoter (2-3kb),11,102939264,102946688,7425,2,C1ql1-201,-2131,C1ql1-201,C1ql1,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,4,23829,ENSMUSG00000045532,conserved gene and region,11,102948533,102948805,273,*,273,33,0.706959707,0.968709677,0.120879121,2.31E-28,CpGisland,TRUE,U3,Pr-B
26420,cg22416088,0.0000655,0.0000243,2.69674557,0.007384896,gain,ns,-0.0000131,0.0000412,-0.316439176,0.751882157,neg,ns,0.064926725,0.012082393,5.3736642,0.000000152,pos,ns,6.818498881,-0.002077805,0.000415513,-5.000582582,0.000000958,neg,yes,0.512340745,Pan3,Pan3_threeUTR,5,147503107,147503156,147503155,147503156,50,-,AGCACTGGACTTGAAGATAAATCCTACAATTCATGAAACTGACTGATTCG,3' UTR,5,147430161,147548502,118342,1,Pan3-201,72946,Pan3-201;Pan3-209;Pan3-205;Pan3-210;Pan3-216;Pan3-218;Pan3-208,Pan3;Pan3;Pan3;Pan3;Pan3;Pan3;Pan3,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,6,72587,ENSMUSG00000029647,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9219,cg16753772,0.00000415,0.00000518,0.802335685,0.422973452,gain,ns,-0.00000278,0.00000879,-0.316413596,0.751901551,neg,ns,0.000675109,0.002576056,0.262070835,0.793440887,pos,ns,0.100485424,-0.000126631,0.0000886,-1.429395597,0.153897505,neg,ns,0.75306609,Col17a1,Col17a1_Exon,19,47669280,47669329,47669328,47669329,50,+,AGGTGAGCAGCAGGCCCAGCAGCCACTTCCACCAGCTGCAGCAGGAGCCG,"Exon (Col17a1-201/Col17a1, exon 17 of 54)",19,47646344,47692094,45751,2,Col17a1-201,22765,Col17a1-201;Col17a1-202;Col17a1-203;Col17a1-205,Col17a1;Col17a1;Col17a1;Col17a1,0;0;0;6507,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,12821,ENSMUSG00000025064,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16151,cg25644033,-0.00000236,0.00000674,-0.350991147,0.7258334,loss,ns,0.00000362,0.0000114,0.316391711,0.751918144,pos,ns,-0.002923838,0.003353229,-0.871947105,0.383912044,neg,ns,0.415768263,0.0000119,0.000115317,0.103572959,0.91757522,pos,ns,0.863362334,Pcdh17,Pcdh17_Exon,14,84532910,84532959,84532910,84532911,50,+,CGAGTGCTTGGTCATTCTGACAGGTGCTGGATGCCACAGTTCCCTGCAGC,"Exon (Pcdh17-201/Pcdh17, exon 4 of 4)",14,84443563,84539002,95440,1,Pcdh17-201,89347,Pcdh17-201,Pcdh17,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,13,219228,ENSMUSG00000035566,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15445,cg11945188,-0.0000568,0.0000106,-5.363768017,0.00000016,loss,yes,0.00000569,0.000018,0.316390272,0.751919235,pos,ns,0.001644589,0.005272964,0.311890786,0.755333189,pos,ns,0.121861432,-0.000385322,0.000181337,-2.124896357,0.034386096,neg,ns,0.781863209,Tnrc6b,Tnrc6b_Exon,15,80918535,80918584,80918535,80918536,50,+,CGCTGCCTTCACCTGGTGCCTGGCCCTACAGTGCCTCTGACAACTCCTTT,"Exon (Tnrc6b-201/Tnrc6b, exon 21 of 25)",15,80711313,80941085,229773,1,Tnrc6b-201,207222,Tnrc6b-201;Tnrc6b-207;Tnrc6b-208;Tnrc6b-202;Tnrc6b-210,Tnrc6b;Tnrc6b;Tnrc6b;Tnrc6b;Tnrc6b,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,20,24,213988,ENSMUSG00000047888,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27956,cg16924584,0.00000955,0.0000131,0.728861521,0.466636643,gain,ns,0.00000704,0.0000223,0.316384656,0.751923493,pos,ns,0.003613239,0.006520749,0.554114086,0.57990026,pos,ns,0.236646697,-0.00040991,0.000224248,-1.827933447,0.068520543,neg,ns,0.298743287,Sertad4,Sertad4_Intron,1,192851822,192851871,192851822,192851823,50,-,CGTGAGTTGCAGTCCCACAGGAGCCAAGCACAACATCAACGGAGCAGGCA,"Intron (Sertad4-204/Sertad4, intron 1 of 3)",1,192844488,192855756,11269,2,Sertad4-204,3885,Sertad4-204;Sertad4-201;Sertad4-203;Sertad4-202,Sertad4;Sertad4;Sertad4;Sertad4,0;0;0;3615,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,3,214791,ENSMUSG00000016262,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
709,cg13060202,-0.00000483,0.00000204,-2.36494292,0.018648498,loss,ns,0.0000011,0.00000347,0.316295094,0.751991401,pos,ns,0.001074844,0.001015902,1.058019185,0.290870431,pos,ns,0.536300426,-0.00000623,0.0000349,-0.178237454,0.858652915,neg,ns,0.934346789,Mios,Mios_Exon,6,8215516,8215565,8215516,8215517,50,+,CGATCGTGTTGCTTCCTTCTATGAAGGTCAGGTTGCAATATGGGATCTTA,"Exon (Mios-201/Mios, exon 3 of 12)",6,8209222,8236274,27053,1,Mios-201,6294,Mios-201,Mios,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,252875,ENSMUSG00000042447,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6020,cg01763754,0.0000157,0.00000462,3.394836421,0.000776045,gain,ns,0.00000248,0.00000784,0.316204923,0.752059772,pos,ns,0.004845662,0.002297915,2.108720654,0.035770643,pos,ns,1.446473252,-0.000309361,0.000079,-3.914720379,0.000111323,neg,ns,0.841039376,Cxxc5,Cxxc5_Exon,18,35858900,35858949,35858900,35858901,50,-,CGGCCATGGCGGTGGACAAAAGCAACCCTACCTCAAAGCACAAAAGTGGT,"Exon (Cxxc5-202/Cxxc5, exon 2 of 2)",18,35829397,35859002,29606,1,Cxxc5-202,29503,Cxxc5-202;Cxxc5-201;Cxxc5-206;Cxxc5-203;Cxxc5-204;Cxxc5-205,Cxxc5;Cxxc5;Cxxc5;Cxxc5;Cxxc5;Cxxc5,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,Exon,8,49,67393,ENSMUSG00000046668,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5015,cg15015141,-0.0000572,0.0000107,-5.359625403,0.000000163,loss,yes,-0.00000573,0.0000181,-0.316135818,0.752112171,neg,ns,-0.004719076,0.005308756,-0.888923217,0.374733591,neg,ns,0.426277375,-0.000435125,0.000182568,-2.383361556,0.017757279,neg,ns,0.478928203,1700012A03Rik,1700012A03Rik_Intron,6,31818813,31818862,31818813,31818814,50,+,CGTGGCGGATCAAGGGGAAATTACACATTCTGTCACATTTGCTTATTGAA,"Intron (Gm13849-201/Gm13849-201, intron 1 of 2)",6,32050246,32058921,8676,1,1700012A03Rik-204,-231384,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,2,76382,ENSMUSG00000029766,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19979,cg11239008,-0.0000027,0.00000115,-2.344522755,0.019682314,loss,ns,-0.000000619,0.00000196,-0.316116871,0.752126538,neg,ns,0.000400756,0.000573415,0.698892706,0.485143087,pos,ns,0.314130152,-0.0000476,0.0000197,-2.414942688,0.016316213,neg,ns,0.014937531,Lamtor1,Lamtor1_fiveUTR,7,101905996,101906045,101906044,101906045,50,+,GCCATGGGGTGCTGCTACAGCAGCGAGAACGAGGACTCGGACCAGGTGCG,Promoter (<=1kb),7,101905904,101911903,6000,1,Lamtor1-201,92,Anapc15-210;Anapc15-203;Anapc15-213;Lamtor1-201;Lamtor1-202;Tomt-201;Tomt-202,Anapc15;Anapc15;Anapc15;Lamtor1;Lamtor1;Tomt;Tomt,9579;8264;8201;0;0;-2211;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,2,66508,ENSMUSG00000030842,mapped to different genes,7,101905670,101906191,522,*,522,54,0.659003831,0.970160041,0.103448276,4.40E-42,CpGisland,TRUE,U1,Pr-A
14983,cg27031526,-0.0000225,0.00000636,-3.537467914,0.000465756,loss,ns,0.00000341,0.0000108,0.316036458,0.752187514,pos,ns,-0.000693438,0.003164605,-0.219123218,0.826698265,neg,ns,0.082652974,-0.000114718,0.00010883,-1.054097545,0.292659128,neg,ns,0.871756504,Gm14460,Gm14460_Intergenic_downstream,2,78312101,78312150,78312149,78312150,50,-,ATTACAGCTTTGCCAGCATATCTGTCTTGTAGAGTGTGATTTGAAAAACG,Distal Intergenic,2,78512698,78513336,639,2,Gm14460-201,201235,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,383717,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19115,cg14240475,0.0000144,0.00000583,2.475623869,0.013834401,gain,ns,0.00000313,0.00000991,0.315959771,0.752245665,pos,ns,0.005320197,0.002902041,1.833260359,0.067722626,pos,ns,1.169266212,-0.000237232,0.0000998,-2.377052415,0.018058243,neg,ns,0.0975639,Gm10320,Gm10320_Intergenic_upstream,13,98503613,98503662,98503661,98503662,50,+,CCAAGAATTCTAAACATGTCTCAAAGTATATAGTAGGCTTGATTGGCACG,Distal Intergenic,13,98489348,98492001,2654,2,Gm10320-201,-11612,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,7,101055909,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
7955,cg13384781,0.0000041,0.00000275,1.491948894,0.136729468,gain,ns,-0.00000147,0.00000467,-0.315786387,0.752377147,neg,ns,0.000806432,0.001367789,0.589588491,0.555896019,pos,ns,0.255006436,-0.0000352,0.000047,-0.748036159,0.455005443,neg,ns,0.055558549,Pax2,Pax2_Intergenic_upstream,19,44670362,44670411,44670410,44670411,50,+,AACAGGACGGGCTTGCTGCTGAGTGCTTAATGGTGCATAAGATTAAGCCG,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-85634,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,19,44670410,44670516,107,*,107,13,0.672897196,1.074131274,0.121495327,2.26E-11,CpGisland,TRUE,U13,Hc-P
14638,cg24786875,-0.00000498,0.00000686,-0.725355913,0.468780906,loss,ns,0.00000368,0.0000117,0.315597787,0.752520176,pos,ns,-0.000251299,0.003415296,-0.07358049,0.94139165,neg,ns,0.026229658,-0.000160904,0.000117452,-1.369959693,0.171690875,neg,ns,0.780974664,Slf1,Slf1_Exon,13,77046581,77046630,77046629,77046630,50,+,AAAGGAGTCACCCCGTCCACTTGAGTGAGCAGATCTACCTCTGGACAACG,"Exon (Slf1-201/Slf1, exon 20 of 21)",13,77043088,77135473,92386,2,Slf1-201,88843,Slf1-201;Slf1-204,Slf1;Slf1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,105377,ENSMUSG00000021597,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19412,cg16973342,-0.0000122,0.00000316,-3.854616682,0.000140929,loss,ns,0.00000169,0.00000537,0.3155956,0.752521835,pos,ns,0.001043072,0.001572147,0.663470088,0.507522611,pos,ns,0.294544604,-0.0000644,0.0000541,-1.191664511,0.234304324,neg,ns,0.071457619,Dusp6,Dusp6_Promoter,10,99263101,99263150,99263149,99263150,50,-,ATGACAAACTCATTAACAATTCATCAACACAACCTGTTCCAGCCGGCCCG,Promoter (<=1kb),10,99263231,99267489,4259,1,Dusp6-204,-130,Dusp6-201;Dusp6-204;Dusp6-202;Dusp6-203,Dusp6;Dusp6;Dusp6;Dusp6,0;0;0;-2491,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,6,8,67603,ENSMUSG00000019960,conserved gene but different region,10,99263144,99263272,129,*,129,11,0.627906977,0.866300366,0.085271318,5.89E-08,CpGisland,TRUE,U1,Pr-A
20383,cg16807187,0.0000155,0.00000305,5.08994398,0.000000622,gain,yes,-0.00000163,0.00000517,-0.315538194,0.752565371,neg,ns,0.004533891,0.001515683,2.991318755,0.003000609,pos,ns,2.522790629,-0.000143174,0.0000521,-2.746785934,0.00637016,neg,ns,0.065424343,Hoxc5,Hoxc5_Intron,15,103014634,103014683,103014634,103014635,50,+,CGATCCAGGCATCAATGGCTCGTAAAACTGTCCACTAAAAGGCTTAGAGG,"Intron (Hoxc5-202/Hoxc5, intron 1 of 1)",15,102967443,103015676,48234,1,Hoxc5-202,47191,Hoxc4-202;Hoxc5-202;Hoxc5-201;Hoxc6-202;Hoxc6-203;Hoxc6-201,Hoxc4;Hoxc5;Hoxc5;Hoxc6;Hoxc6;Hoxc6,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,46,134,15424,ENSMUSG00000022485,mapped to different genes,15,103014167,103014734,568,*,568,41,0.588028169,0.835773758,0.072183099,1.73E-25,CpGisland,TRUE,U13,Hc-P
15208,cg14842657,-0.0000425,0.0000145,-2.923607217,0.003714822,loss,ns,-0.00000779,0.0000247,-0.315480602,0.75260905,neg,ns,-0.025159533,0.007237828,-3.476116188,0.000581343,neg,ns,3.235567909,0.000617261,0.000248908,2.479874565,0.013673816,pos,ns,0.632945842,Rad51b,Rad51b_Intron,12,79626036,79626085,79626036,79626037,50,+,CGGAGCTGTCTGTCTTTTCATGTAAATGGAGCCCTTAAGCCTATTTAGAA,"Intron (Rad51b-202/Rad51b, intron 7 of 10)",12,79297282,79814690,517409,1,Rad51b-202,328754,Rad51b-202;Rad51b-203;Rad51b-204,Rad51b;Rad51b;Rad51b,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,6,19363,ENSMUSG00000059060,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23268,cg17977572,0.000000311,0.00000333,0.093426725,0.925624912,gain,ns,0.00000178,0.00000566,0.315478434,0.752610694,pos,ns,0.002907833,0.001657613,1.754228645,0.080379399,pos,ns,1.094855245,-0.000144623,0.000057,-2.537006904,0.011670527,neg,ns,0.94059793,Eri3,Eri3_Intron,4,117640771,117640820,117640819,117640820,50,-,CCTGATATGATTACCATGGATTTAATATCACATGATATATCATTATATCG,"Intron (Eri3-201/Eri3, intron 7 of 8)",4,117550365,117674297,123933,1,Eri3-201,90406,Eri3-201;Eri3-206;Eri3-203,Eri3;Eri3;Eri3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,82,97,140546,ENSMUSG00000033423,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18590,cg11749810,0.0000158,0.00000762,2.071152105,0.039171726,gain,ns,-0.00000408,0.000013,-0.315293602,0.75275088,neg,ns,-0.004127157,0.003794952,-1.087538622,0.277643668,neg,ns,0.556512227,0.0000552,0.000130508,0.422798797,0.672735193,pos,ns,0.119552022,Hoxb5,Hoxb5_Exon,11,96303642,96303691,96303642,96303643,50,+,CGGGGCGTTATCCAAATGGCCCGGACTATCAGTTGCTAAATTATGGCAGT,Promoter (<=1kb),11,96303336,96306121,2786,1,Hoxb5-202,306,Hoxb5-202;Hoxb5-201;Hoxb6-202;Hoxb6-201,Hoxb5;Hoxb5;Hoxb6;Hoxb6,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,22,34,15413,ENSMUSG00000038700,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
6379,cg18199845,-0.0000167,0.00000465,-3.586830003,0.000388792,loss,ns,0.00000249,0.00000789,0.315246635,0.752786503,pos,ns,-0.001326408,0.002312394,-0.573608237,0.566648835,neg,ns,0.246686,0.00000792,0.0000795,0.099603811,0.920723248,pos,ns,0.886090267,Pknox2,Pknox2_Intron,9,37058582,37058631,37058582,37058583,50,-,CGAGAACAAATTAAACTTCCCGGAGTATATGGGTTAGAGATAATGGGAAA,"Intron (Pknox2-207/Pknox2, intron 1 of 10)",9,36890982,37083309,192328,2,Pknox2-207,24678,Pknox2-207;Pknox2-201;Pknox2-202;Pknox2-206;Pknox2-204;Pknox2-205;Pknox2-208;Pknox2-210;Pknox2-209;Pknox2-212;Pknox2-211,Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,47,208076,ENSMUSG00000035934,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6935,cg11368968,-0.00000207,0.00000359,-0.576172605,0.564916587,loss,ns,0.00000192,0.0000061,0.315136164,0.752870294,pos,ns,0.000410339,0.001786623,0.229673164,0.818497216,pos,ns,0.086982794,0.0000918,0.0000614,1.494513736,0.136058587,pos,ns,0.925210192,Rev3l,Rev3l_threeUTR,10,39783252,39783301,39783252,39783253,50,+,CGACAGAGCACTTAATGTGGCTTTAGGCAATCCATCTTCCACTGCTCAGC,3' UTR,10,39732118,39875211,143094,1,Rev3l-201,51134,Rev3l-201;Rev3l-204;Rev3l-207,Rev3l;Rev3l;Rev3l,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,7,19714,ENSMUSG00000019841,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3190,cg23108693,-0.00000378,0.00000378,-0.999448876,0.318356784,loss,ns,0.00000202,0.00000642,0.315059114,0.752928737,pos,ns,0.004704519,0.001880506,2.501730662,0.012873974,pos,ns,1.890287363,-0.000160389,0.0000647,-2.48010477,0.013665167,neg,ns,0.903409474,Gpat4,Gpat4_Intergenic_downstream,8,23168889,23168938,23168937,23168938,50,+,AAAATTAAAACAATTTTAAAGTGATTAAGTAGTTTAACACCTGTCTCCCG,Downstream (2-3kb),8,23178797,23180227,1431,2,Gpat4-203,11289,Gpat4-201,Gpat4,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,3,4,102247,ENSMUSG00000031545,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24159,cg00438646,-0.00000631,0.00000436,-1.447640146,0.148728253,loss,ns,-0.00000233,0.00000741,-0.315025558,0.752954191,neg,ns,-0.004061715,0.002171084,-1.870823712,0.062311487,neg,ns,1.205431884,-0.0000183,0.0000747,-0.245104838,0.80653743,neg,ns,0.88523654,Myoz2,Myoz2_fiveUTR,3,123035006,123035055,123035054,123035055,50,+,ACTGGCTATATATAGCACCAAATACTTTAGCTACTCATATCTTCCTGGCG,Promoter (<=1kb),3,123006206,123035015,28810,2,Myoz2-201,0,Myoz2-201;Myoz2-203;Myoz2-204;Myoz2-205;Myoz2-202,Myoz2;Myoz2;Myoz2;Myoz2;Myoz2,0;-162;-2;-43;-54,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,1,59006,ENSMUSG00000028116,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19510,cg06308220,0.0000459,0.0000131,3.511242223,0.000512245,gain,ns,0.00000699,0.0000222,0.314998768,0.752974512,pos,ns,0.053327928,0.006499566,8.204844585,6.24E-15,pos,yes,14.20486399,-0.001187176,0.00022352,-5.31128371,0.000000208,neg,yes,0.625969384,Foxn3,Foxn3_Intron,12,99499110,99499159,99499158,99499159,50,+,TGGGCAACCAGCAAGCTTTTGGCATGTGGCTGATGTCTCCAGGCAGCCCG,"Intron (Foxn3-205/Foxn3, intron 1 of 2)",12,99388345,99563508,175164,2,Foxn3-205,64349,Foxn3-205;Foxn3-214;Foxn3-213;Foxn3-210,Foxn3;Foxn3;Foxn3;Foxn3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,17,71375,ENSMUSG00000033713,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9356,cg07740086,-0.000000975,0.00000227,-0.4298433,0.667608264,loss,ns,-0.00000121,0.00000385,-0.314716085,0.753188947,neg,ns,-0.001775493,0.001128599,-1.573183252,0.116696406,neg,ns,0.932942521,0.00000419,0.0000388,0.10795617,0.914100298,pos,ns,0.957245752,Tenm3,Tenm3_Exon,8,48349276,48349325,48349324,48349325,50,-,TAAGAAACTGTGGCTGATCAATGAAGAGCTGTGATCTCCAGAAGATCCCG,"Exon (Tenm3-201/Tenm3, exon 6 of 29)",8,48227682,48674690,447009,2,Tenm3-201,325365,Tenm3-201;Tenm3-206;Tenm3-204,Tenm3;Tenm3;Tenm3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,39,23965,ENSMUSG00000031561,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23197,cg19623982,-0.0000705,0.0000104,-6.800324557,5.38E-11,loss,yes,0.00000554,0.0000176,0.314695369,0.753204663,pos,ns,-0.014995796,0.005158003,-2.907287396,0.003908732,neg,ns,2.407964064,0.000479234,0.000177383,2.70168598,0.007278596,pos,ns,0.728260758,Rnf220,Rnf220_Intron,4,117427730,117427779,117427778,117427779,50,-,CCCATGTAATTACCCCAGCATCTTAAATAAAGCAGGCCCTAAACCTGTCG,"Intron (Rnf220-201/Rnf220, intron 2 of 14)",4,117271463,117497052,225590,2,Rnf220-201,69273,Rnf220-201;Rnf220-207,Rnf220;Rnf220,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7243,cg04613777,0.0000221,0.0000035,6.300843774,1.01E-09,gain,yes,0.00000187,0.00000595,0.314645012,0.753242864,pos,ns,0.005183723,0.001743485,2.973195287,0.00317829,pos,ns,2.497806429,-0.0000917,0.00006,-1.530195446,0.126988125,neg,ns,0.054903683,Gm8707,Gm8707_Intron,9,41736031,41736080,41736079,41736080,50,-,CCTCCTTCTTAAGAAGACTTTCCCAGGTCCCTCTTGGCTGTGGTTGAACG,"Intron (Gm35835-202/Gm35835-202, intron 2 of 4)",9,41654303,41655282,980,1,Gm8707-201,81777,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,12,667566,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
14968,cg24884402,-0.0000251,0.00000407,-6.162946276,2.22E-09,loss,yes,0.00000218,0.00000692,0.314636763,0.753249123,pos,ns,-0.003636639,0.002026798,-1.794278461,0.073743016,neg,ns,1.132279107,-0.0000273,0.0000697,-0.391247389,0.695883158,neg,ns,0.932494798,Supt6,Supt6_Exon,11,78220586,78220635,78220586,78220587,50,-,CGTGCACTCACATGGACCTATGTTATTCGTGGAGTGTTACAGCAAAGCTG,"Exon (Supt6-202/Supt6, exon 6 of 19)",11,78206746,78245987,39242,2,Supt6-201,25352,Supt6-201;Supt6-202,Supt6;Supt6,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,7,20926,ENSMUSG00000002052,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3088,cg00207813,-0.000033,0.0000129,-2.56663857,0.010738252,loss,ns,0.00000688,0.0000219,0.314586497,0.753287255,pos,ns,-0.017556785,0.006403413,-2.74178563,0.006465564,neg,ns,2.189393589,0.000659535,0.000220213,2.994986721,0.002965775,pos,ns,0.847192446,Lrmda,Lrmda_Intron,14,22649665,22649714,22649665,22649666,50,-,CGGCCTGTCAGACTTGTCAGGCCTAGTAAGAAAAAGTATATTGTTTCCAG,"Intron (Lrmda-201/Lrmda, intron 5 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,629953,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206,Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21291,cg21330687,-0.0000403,0.00000788,-5.109182638,0.000000567,loss,yes,-0.00000421,0.0000134,-0.314493461,0.753357838,neg,ns,-0.006110693,0.003921194,-1.558375517,0.120164536,neg,ns,0.920223685,-0.000123926,0.00013485,-0.918998248,0.358810988,neg,ns,0.780608067,Kcna2,Kcna2_Intergenic_downstream,3,107128578,107128627,107128626,107128627,50,-,AGTGCAATTTGCATGTATTTTAAGCTGACTTGTTCCAGGCAAAGAAGCCG,Distal Intergenic,3,107102682,107105971,3290,1,Kcna2-202,25945,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,4,16490,ENSMUSG00000040724,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15373,cg20107331,0.0000472,0.0000404,1.169780476,0.242987904,gain,ns,-0.0000216,0.0000686,-0.314466772,0.753378085,neg,ns,0.124695414,0.02009808,6.20434447,1.76E-09,pos,ns,8.755446737,-0.003452347,0.000691171,-4.994922619,0.000000985,neg,yes,0.457266421,Nckap1,Nckap1_Exon,2,80540143,80540192,80540191,80540192,50,-,TTCTTTGGCATGTTATCTGCATGACGAAGTAGCCAGATGATTTCATCACG,"Exon (Nckap1-201/Nckap1, exon 12 of 31)",2,80500512,80581264,80753,2,Nckap1-201,41072,Nckap1-201;Nckap1-202;Nckap1-203,Nckap1;Nckap1;Nckap1,0;0;14878,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,7,50884,ENSMUSG00000027002,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11611,cg23089428,0.0000196,0.00000331,5.929421508,8.10E-09,gain,yes,0.00000177,0.00000563,0.314445505,0.75339422,pos,ns,-0.000471554,0.001648959,-0.28597074,0.775091532,neg,ns,0.110647008,0.0000991,0.0000567,1.748099242,0.081436814,pos,ns,0.061493805,Emx2,Emx2_Exon,19,59459229,59459278,59459229,59459230,50,+,CGCCCAAGCGCTGCTTCACCATCGAGTCGCTGGTGGCCAAGGACAGTCCC,Promoter (<=1kb),19,59458372,59465357,6986,1,Emx2-201,857,Emx2-201;Emx2-202;Emx2-203,Emx2;Emx2;Emx2,0;-241;-3524,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,23,13797,ENSMUSG00000043969,mapped to different genes,19,59459109,59459803,695,*,695,84,0.709352518,0.990230002,0.120863309,1.88E-71,CpGisland,TRUE,U3,Pr-B
15844,cg08220031,-0.0000581,0.0000102,-5.71297239,0.000000026,loss,yes,0.00000543,0.0000173,0.314256871,0.753537335,pos,ns,-0.001643801,0.005065377,-0.324517097,0.745765448,neg,ns,0.127397742,-0.000252248,0.000174198,-1.448053884,0.148612591,neg,ns,0.805595558,Zc3h15,Zc3h15_Exon,2,83658119,83658168,83658119,83658120,50,+,CGAAGTGTTTACATTGATGCAAGAGATGAAGAACTTGAAAAAGGTAATTT,"Exon (Zc3h15-201/Zc3h15, exon 4 of 10)",2,83644435,83664622,20188,1,Zc3h15-201,13684,Zc3h15-201;Zc3h15-203;Zc3h15-206;Zc3h15-202;Zc3h15-207;Zc3h15-205;Zc3h15-204,Zc3h15;Zc3h15;Zc3h15;Zc3h15;Zc3h15;Zc3h15;Zc3h15,0;0;13582;0;1499;0;-1842,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,69082,ENSMUSG00000027091,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6203,cg21817179,-0.00000848,0.00000674,-1.258018401,0.209331841,loss,ns,0.0000036,0.0000115,0.314243639,0.753547375,pos,ns,-0.003484282,0.003356268,-1.038141768,0.300013115,neg,ns,0.522859759,0.000142574,0.000115422,1.235246618,0.217674075,pos,ns,0.828810341,Sostdc1,Sostdc1_Exon,12,36314444,36314493,36314492,36314493,50,-,AATCAAGCCAGAAATGGAGGCAGGCATTTCAGTAACACTGGACTGGATCG,Promoter (<=1kb),12,36314139,36318452,4314,1,Sostdc1-201,305,Sostdc1-201,Sostdc1,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,66042,ENSMUSG00000036169,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24093,cg09298449,0.00000917,0.00000169,5.431797417,0.000000113,gain,yes,0.000000901,0.00000287,0.3141623,0.753609088,pos,ns,-0.00064154,0.000840595,-0.763198322,0.445925526,neg,ns,0.350737666,0.0000442,0.0000289,1.528412973,0.127429725,pos,ns,0.043116919,Zic5,Zic5_fiveUTR,14,122465479,122465528,122465527,122465528,50,-,AACACCACATTTGAGCTGCACAGTGGGACCGAGATTTTGGAAATGGCACG,Promoter (<=1kb),14,122456795,122465677,8883,2,Zic5-201,149,Zic5-201,Zic5,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,26,65100,ENSMUSG00000041703,conserved gene and region,14,122465508,122465682,175,*,175,12,0.64,0.669642857,0.068571429,0.000000139,CpGisland,TRUE,U3,Pr-B
19717,cg12073704,-0.0000414,0.00000821,-5.044371157,0.000000776,loss,yes,-0.00000438,0.0000139,-0.313951873,0.753768753,neg,ns,-0.007851396,0.004085341,-1.921846207,0.055541587,neg,ns,1.255381715,0.000235736,0.000140495,1.677904747,0.09437352,pos,ns,0.873286849,Dglucy,Dglucy_Exon,12,100878553,100878602,100878601,100878602,50,-,TAGGGCAGGAAGCAGGCCAGGAAGATGACCACGGTGCTGAGCACCAGCCG,"Exon (Gpr68-203/Gpr68, exon 3 of 3)",12,100779086,100896981,117896,1,Dglucy-203,99467,Dglucy-203;Dglucy-205;Gpr68-203;Gpr68-201;Gpr68-202;Gpr68-206,Dglucy;Dglucy;Gpr68;Gpr68;Gpr68;Gpr68,0;11364;0;0;0;20896,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,217830,ENSMUSG00000021185,mapped to different genes,12,100878532,100878656,125,*,125,9,0.632,0.723938224,0.072,0.00000584,CpGisland,TRUE,U15,NS
17732,cg08683739,-0.00000155,0.00000119,-1.306889693,0.192218798,loss,ns,0.000000633,0.00000202,0.313945938,0.753773256,pos,ns,0.000767458,0.000590531,1.299606319,0.194701521,pos,ns,0.710630655,-0.0000305,0.0000203,-1.499862341,0.134667781,neg,ns,0.970534977,Fto,Fto_Intron,8,91533158,91533207,91533206,91533207,50,+,AAGGTAAAATGTAACTTGGGGAACTAGTTATGAAAATTCCATCCATCTCG,"Intron (Fto-201/Fto, intron 8 of 8)",8,91313525,91668439,354915,1,Fto-201,219633,Fto-201;Fto-205,Fto;Fto,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,26,26383,ENSMUSG00000055932,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8509,cg24514256,0.0000389,0.00000558,6.966677244,1.95E-11,gain,yes,0.00000298,0.00000949,0.31391942,0.753793378,pos,ns,0.004085946,0.002779511,1.470023565,0.14256955,pos,ns,0.845973222,-0.0000403,0.0000956,-0.421963886,0.673343854,neg,ns,0.811898746,Lbx1,Lbx1_Intergenic_upstream,19,45248905,45248954,45248953,45248954,50,+,AACAGATGGCCCCGTTTCTGTCCAAGCCAGGGAGACTGGTGCCCATTCCG,Distal Intergenic,19,45232684,45235812,3129,2,Lbx1-201,-13093,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,15,50,16814,ENSMUSG00000025216,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11654,cg09346054,-0.00000516,0.00000182,-2.837611159,0.004844861,loss,ns,0.000000969,0.00000309,0.313909092,0.753801215,pos,ns,0.0000516,0.000904317,0.057008003,0.954575547,pos,ns,0.020189695,-0.0000407,0.0000311,-1.309600374,0.19130079,neg,ns,0.039996839,Trib1,Trib1_Promoter,15,59647777,59647826,59647825,59647826,50,+,TGCTTTTATTTCCTCCAACAGAAGGTTCTATTTGTGGAAGCGAACAGACG,Promoter (<=1kb),15,59648350,59657099,8750,1,Trib1-201,-524,Trib1-201;Trib1-202,Trib1;Trib1,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,5,211770,ENSMUSG00000032501,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
1931,cg15734784,-0.0000303,0.00000843,-3.596462724,0.000375239,loss,ns,-0.00000449,0.0000143,-0.313882106,0.753821692,neg,ns,-0.016633102,0.004194573,-3.965386455,0.000091,neg,ns,4.040740974,0.000387884,0.000144251,2.688953791,0.007555393,pos,ns,0.786054496,Npas1,Npas1_Intron,7,16472383,16472432,16472383,16472384,50,+,CGCCAGTCAATTCGCCTAATTACCGCCTGGGAAGCCGGATTATTTAAATT,"Intron (Npas1-202/Npas1, intron 2 of 10)",7,16455721,16475688,19968,2,Npas1-202,3256,Npas1-202;Npas1-201;Npas1-203;Npas1-204,Npas1;Npas1;Npas1;Npas1,0;0;0;5296,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,18142,ENSMUSG00000001988,conserved gene and region,7,16472318,16472451,134,*,134,12,0.485074627,1.522727273,0.089552239,6.76E-09,CpGisland,TRUE,U13,Hc-P
19008,cg23163484,0.00000106,0.0000023,0.462388314,0.644127245,gain,ns,-0.00000123,0.00000391,-0.313869227,0.753831465,neg,ns,0.001921721,0.001146215,1.676580325,0.094632666,pos,ns,1.023958925,-0.0000489,0.0000394,-1.239733585,0.216011596,neg,ns,0.950763095,Med1,Med1_Exon,11,98158400,98158449,98158448,98158449,50,+,TGGGGTGTCGGCTTGAATGGTTTCAGCTTTCCTCCGAATAGCCCTCATCG,"Exon (Med1-202/Med1, exon 17 of 18)",11,98152154,98193260,41107,2,Med1-202,34811,Med1-202;Med1-203;Med1-204;Med1-201;Med1-207,Med1;Med1;Med1;Med1;Med1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,13,19014,ENSMUSG00000018160,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15540,cg15314236,-0.00000724,0.00000352,-2.055520913,0.040666073,loss,ns,0.00000188,0.00000599,0.313859794,0.753838623,pos,ns,-0.002294274,0.001753981,-1.308037782,0.191829586,neg,ns,0.717084411,0.00000704,0.0000603,0.116753851,0.907130717,pos,ns,0.929631962,Gm50297,Gm50297_Intergenic_downstream,18,81673020,81673069,81673068,81673069,50,-,TGAGAGGAAACCTAATTCGATTTGCATTCATTTGGGTCATCTGCCCTTCG,Distal Intergenic,18,82261062,82261262,201,2,Gm50297-201,588242,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,17,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5391,cg11224923,-0.00000219,0.00000333,-0.656641155,0.511898823,loss,ns,0.00000178,0.00000566,0.31385444,0.753842685,pos,ns,0.000222256,0.001657494,0.134091451,0.893417271,pos,ns,0.048945656,0.0000198,0.000057,0.347323037,0.728584328,pos,ns,0.918490856,Mvb12b,Mvb12b_Intron,2,33771758,33771807,33771806,33771807,50,+,TAATGACTTGATAGACTTCTATGAACTGGTGAACACAGAACAGCAGAGCG,"Intron (Mvb12b-201/Mvb12b, intron 7 of 9)",2,33729953,33887946,157994,2,Mvb12b-201,116139,Mvb12b-201,Mvb12b,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,28,47,72543,ENSMUSG00000038740,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18758,cg21534787,-0.00000285,0.00000591,-0.483101203,0.629364886,loss,ns,-0.00000315,0.00001,-0.313849405,0.753846506,neg,ns,0.004172707,0.002939134,1.419706237,0.156698028,pos,ns,0.804936469,-0.000127762,0.000101077,-1.26401156,0.207175492,neg,ns,0.889198076,Uba3,Uba3_threeUTR,6,97203473,97203522,97203521,97203522,50,+,CTTCAGTGCTCGGTTCGAAATCAGGGTGTGTGAAGGGTCCAGATCGCTCG,3' UTR,6,97183670,97205560,21891,2,Uba3-202,2038,Uba3-202;Uba3-204;Uba3-201;Uba3-205;Uba3-203,Uba3;Uba3;Uba3;Uba3;Uba3,0;0;0;0;2046,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,4,22200,ENSMUSG00000030061,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
6050,cg16991239,-0.00000352,0.00000232,-1.518988872,0.129784488,loss,ns,0.00000124,0.00000394,0.313812478,0.753874527,pos,ns,0.001183586,0.001154322,1.02535106,0.305996995,pos,ns,0.514282839,-0.0000386,0.0000397,-0.973323863,0.331151225,neg,ns,0.019661314,Ppp1r10,Ppp1r10_fiveUTR,17,35917697,35917746,35917697,35917698,50,-,CGTCGCAAAAAAATTGGATAGTAAGTGTCGAATTTTCAAAAACCAGCCTT,5' UTR,17,35916434,35917764,1331,1,Ppp1r10-207,1263,Mrps18b-201;Mrps18b-202;Mrps18b-208;Mrps18b-206;Mrps18b-203;Mrps18b-207;Mrps18b-205;Ppp1r10-207;Ppp1r10-202;Ppp1r10-203;Ppp1r10-204;Ppp1r10-206;Ppp1r10-201,Mrps18b;Mrps18b;Mrps18b;Mrps18b;Mrps18b;Mrps18b;Mrps18b;Ppp1r10;Ppp1r10;Ppp1r10;Ppp1r10;Ppp1r10;Ppp1r10,-1308;-1308;-1367;-1360;-1374;-1320;-1494;0;0;1118;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,4,52040,ENSMUSG00000039220,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
18147,cg26419744,0.0000135,0.00000902,1.50200341,0.13411414,gain,ns,-0.00000481,0.0000153,-0.313776167,0.75390208,neg,ns,-0.010036645,0.004489376,-2.235643466,0.026086781,neg,ns,1.583579507,0.000361345,0.000154389,2.340477749,0.019892968,pos,ns,0.127308193,Hsd17b12,Hsd17b12_Intron,2,94241924,94241973,94241924,94241925,50,-,CGCTGCGTAAAGAGAAAAACTCCCCCAGAGCACTAAATAAATACAGACGA,"Intron (Mir670hg-205/Mir670hg-205, intron 2 of 5)",2,94032689,94157964,125276,2,Hsd17b12-201,-84009,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,14,19,56348,ENSMUSG00000027195,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5495,cg27125966,-0.00000863,0.00000534,-1.616809793,0.106936453,loss,ns,0.00000285,0.00000907,0.313674813,0.753978993,pos,ns,-0.005363942,0.002657183,-2.01865747,0.04438356,neg,ns,1.352777866,0.000126034,0.0000914,1.379220939,0.168820841,pos,ns,0.920380001,Pbx3,Pbx3_Intron,2,34107982,34108031,34108030,34108031,50,+,TTCAATTTTAATTTGCATAAAATATTTATCAAGGCTTACGCAAATTTCCG,"Intron (Gm38389-201/Gm38389-201, intron 1 of 1)",2,34172873,34288852,115980,2,Pbx3-210,180821,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,82,18516,ENSMUSG00000038718,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18940,cg15215738,0.000000314,0.00000209,0.14998349,0.880875176,gain,ns,-0.00000111,0.00000355,-0.313656245,0.753993083,neg,ns,0.001498519,0.001040625,1.440018248,0.150871338,pos,ns,0.821393257,-0.0000769,0.0000358,-2.148785918,0.032425553,neg,ns,0.948628486,Dach1,Dach1_Intron,14,97981084,97981133,97981132,97981133,50,+,CATTGGCCTAGTTAATAAACTTTCATTGAAGGTTTCTTTCAACTGTTACG,"Intron (Dach1-201/Dach1, intron 2 of 10)",14,97786853,98169543,382691,2,Dach1-201,188410,Dach1-201;Dach1-202;Dach1-203,Dach1;Dach1;Dach1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,76,13134,ENSMUSG00000055639,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26115,cg21150352,-0.00000383,0.00000253,-1.510108993,0.132034199,loss,ns,-0.00000135,0.00000431,-0.313643276,0.754002924,neg,ns,-0.000945576,0.001261523,-0.749551235,0.454093455,neg,ns,0.342854757,-0.0000839,0.0000434,-1.934955365,0.053905235,neg,ns,0.941099919,Gm2505,Gm2505_Intergenic_downstream,3,143983018,143983067,143983066,143983067,50,-,TTGTCAACGTTTGAAAGCTCTGTTTTTCTCTAGCTTGGCATAGTCCAACG,Distal Intergenic,3,143872995,143873819,825,1,Gm2505-201,110072,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,37,100039938,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20976,cg10438011,0.0000461,0.00000631,7.305587208,2.35E-12,gain,yes,-0.00000336,0.0000107,-0.313592115,0.754041749,neg,ns,0.00218334,0.003142002,0.694888266,0.487645823,pos,ns,0.311895491,-0.0000785,0.000108053,-0.726288021,0.468210233,neg,ns,0.072565646,Spry2,Spry2_Promoter,14,105897337,105897386,105897337,105897338,50,-,CGAGGCGGAACAGAGCAGTTGTTGTCCCAGAGGATATATCGCATCCGGTC,Promoter (<=1kb),14,105891947,105896819,4873,2,Spry2-201,-567,Spry2-201,Spry2,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,8,12,24064,ENSMUSG00000022114,conserved gene and region,14,105896882,105897547,666,*,666,86,0.741741742,0.95483871,0.129129129,5.47E-76,CpGisland,TRUE,U1,Pr-A
18015,cg10654251,0.00000294,0.00000583,0.504537402,0.614242219,gain,ns,0.0000031,0.0000099,0.313551044,0.754072917,pos,ns,-0.004877538,0.002901068,-1.681290432,0.093713652,neg,ns,1.028197137,0.000106099,0.0000998,1.063466354,0.288398208,pos,ns,0.90082833,Pola1,Pola1_Intron,X,93310099,93310148,93310099,93310100,50,+,CGAAAGAGGGGACTCGGGTTAAATGCTGGAAGACAAGCTTAAATAAAGTT,"Intron (Pola1-201/Pola1, intron 36 of 36)",20,93304767,93632155,327389,2,Pola1-201,322007,Pola1-201,Pola1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,59,62,18968,ENSMUSG00000006678,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24073,cg25565820,-0.0000141,0.00000617,-2.284205214,0.023035257,loss,ns,-0.00000328,0.0000105,-0.31345727,0.754144081,neg,ns,-0.002876951,0.00306989,-0.937151196,0.34941031,neg,ns,0.456664285,-0.0000644,0.000105573,-0.610398688,0.542044959,neg,ns,0.881056997,Rimklb,Rimklb_Intron,6,122451032,122451081,122451032,122451033,50,-,CGCCGTTCCCACGGATGCTCCTAGAGGCCTGCTGTGCTTCTGGGAACTGA,"Intron (Rimklb-204/Rimklb, intron 6 of 7)",6,122447296,122466587,19292,2,Rimklb-204,15506,Rimklb-204;Rimklb-202;Rimklb-201;Rimklb-206,Rimklb;Rimklb;Rimklb;Rimklb,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,7,108653,ENSMUSG00000040649,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2741,cg13353999,0.0000329,0.0000107,3.085238431,0.002217224,gain,ns,-0.00000568,0.0000181,-0.31342188,0.754170939,neg,ns,-0.009183165,0.005312375,-1.728636397,0.084869855,neg,ns,1.071246539,0.000180771,0.000182692,0.989481759,0.32319917,pos,ns,0.280174282,Klhl14,Klhl14_fiveUTR,18,21654505,21654554,21654505,21654506,50,-,CGTACATCATTTGATCACCATGAATTAGCAACAGCAAGAAAATGTAGGAG,Promoter (<=1kb),18,21550379,21654718,104340,2,Klhl14-202,164,Klhl14-201;Klhl14-202,Klhl14;Klhl14,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,38,225266,ENSMUSG00000042514,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4619,cg16087975,-0.0000242,0.00000494,-4.894248966,0.00000159,loss,yes,0.00000263,0.0000084,0.31339356,0.754192432,pos,ns,-0.007735726,0.002459571,-3.14515271,0.001820963,neg,ns,2.739698951,0.000185377,0.0000846,2.191621368,0.02915053,pos,ns,0.938064445,Mecom,Mecom_threeUTR,3,29979939,29979988,29979939,29979940,50,+,CGATCTCAAGTCTCTATCAGGAAATGGGTACATTGATTGAGAGAATGCTG,3' UTR,3,29951296,30013156,61861,2,Mecom-206,33168,Mecom-206;Mecom-212;Mecom-202;Mecom-203;Mecom-210;Mecom-215;Mecom-204;Mecom-213;Mecom-207;Mecom-208;Mecom-205;Mecom-216,Mecom;Mecom;Mecom;Mecom;Mecom;Mecom;Mecom;Mecom;Mecom;Mecom;Mecom;Mecom,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,10,80,14013,ENSMUSG00000027684,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27790,cg01784864,-0.00000495,0.00000589,-0.840487198,0.401283062,loss,ns,-0.00000314,0.00001,-0.313370969,0.754209577,neg,ns,-0.003883714,0.002933756,-1.323802662,0.186543936,neg,ns,0.729218864,0.000112968,0.000100892,1.119698549,0.263709016,pos,ns,0.885796544,Spata17,Spata17_Intron,1,187092754,187092803,187092754,187092755,50,+,CGGTCGTTAAGCTGAATGTTCATTATTATCAGGATGCTGGTGACAGCAGA,"Intron (Spata17-205/Spata17, intron 9 of 10)",1,187044648,187215465,170818,2,Spata17-205,122662,Spata17-205;Spata17-201,Spata17;Spata17,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,6,74717,ENSMUSG00000026611,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15754,cg02132051,-0.000108105,0.0000102,-10.54921444,1.96E-22,loss,yes,0.00000545,0.0000174,0.313236869,0.754311351,pos,ns,-0.015353479,0.005100399,-3.010250598,0.002824765,neg,ns,2.549017719,0.0000763,0.000175402,0.435010378,0.663857577,pos,ns,0.707666394,Rgs6,Rgs6_threeUTR,12,83150194,83150243,83150194,83150195,50,-,CGCAGAGTCAGAATGGCCGCTGCATTTCACCCCCGAGGTGGCTTCCTTCC,3' UTR,12,82616636,83157971,541336,1,Rgs6-209,533558,Rgs6-209;Rgs6-203;Rgs6-216;Rgs6-222;Rgs6-208;Rgs6-205;Rgs6-206;Rgs6-204;Rgs6-207;Rgs6-220,Rgs6;Rgs6;Rgs6;Rgs6;Rgs6;Rgs6;Rgs6;Rgs6;Rgs6;Rgs6,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,5,50779,ENSMUSG00000021219,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9214,cg02099160,0.0000326,0.00000913,3.577314129,0.000402631,gain,ns,-0.00000486,0.0000155,-0.313229718,0.754316778,neg,ns,0.01590984,0.004542346,3.502560543,0.000528569,pos,ns,3.276898373,-0.000440462,0.000156211,-2.81966106,0.005116988,neg,ns,0.826241778,Cadm1,Cadm1_Intron,9,47613131,47613180,47613179,47613180,50,-,GTGTTCATAAACTTGATGAGTCTAACAGTTTGGCACCGCTGGTGAGCGCG,"Intron (Cadm1-204/Cadm1, intron 1 of 9)",9,47530173,47853385,323213,1,Cadm1-204,82958,Cadm1-204;Cadm1-209;Cadm1-206;Cadm1-202;Cadm1-203;Cadm1-207;Cadm1-205;Cadm1-211;Cadm1-210;Cadm1-208;Cadm1-201,Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,77,54725,ENSMUSG00000032076,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27706,cg03787174,0.0000032,0.00000329,0.972989232,0.331317246,gain,ns,0.00000175,0.00000558,0.313178566,0.754355601,pos,ns,-0.000710756,0.001635406,-0.434605086,0.664151467,neg,ns,0.177732863,0.0000472,0.0000562,0.839246604,0.401977653,pos,ns,0.933795352,Zbtb18,Zbtb18_threeUTR,1,177448544,177448593,177448592,177448593,50,+,TGTACAGACACATTCGCAAGTTCCACTGTGAGTTGGTGAACTCCTTGTCG,3' UTR,1,177444295,177450764,6470,1,Zbtb18-202,4249,Zbtb18-209;Zbtb18-211;Zbtb18-208;Zbtb18-203;Zbtb18-202;Zbtb18-204;Zbtb18-206;Zbtb18-210;Zbtb18-205;Zbtb18-212;Zbtb18-207;Zbtb18-201,Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,22,30928,ENSMUSG00000063659,conserved gene but different region,1,177448381,177448608,228,*,228,17,0.596491228,0.838961039,0.074561404,3.94E-11,CpGisland,TRUE,U10,Tr-S
23282,cg13481311,-0.00000476,0.00000254,-1.874122607,0.061853938,loss,ns,0.00000135,0.00000431,0.313093077,0.754420486,pos,ns,0.000613441,0.001263346,0.485568464,0.627616161,pos,ns,0.202305882,0.0000147,0.0000434,0.339295202,0.734617092,pos,ns,0.975094318,Eri3,Eri3_Intron,4,117647225,117647274,117647225,117647226,50,-,CGAGAATCTATTACTGAAATTCGGGTGTGATTTGACAGCAAAGTAGACGA,"Intron (Eri3-201/Eri3, intron 7 of 8)",4,117550365,117674297,123933,1,Eri3-201,96860,Eri3-201;Eri3-206;Eri3-203,Eri3;Eri3;Eri3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,82,97,140546,ENSMUSG00000033423,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11499,cg21821706,-0.00000129,0.00000237,-0.545078331,0.586091577,loss,ns,0.00000126,0.00000403,0.313079906,0.754430482,pos,ns,-0.001617726,0.001182039,-1.368589222,0.172118679,neg,ns,0.764171996,0.0000288,0.0000407,0.709013722,0.478848826,pos,ns,0.947317993,Nptn,Nptn_Exon,9,58618776,58618825,58618824,58618825,50,-,GTCAACCGGGCAGAGTCTTTCAGACAGCTGTGGGACGGTGCTCGGAAGCG,"Exon (Nptn-212/Nptn, exon 2 of 8)",9,58582240,58651318,69079,1,Nptn-212,36536,Nptn-212;Nptn-201;Nptn-213;Nptn-206;Nptn-203;Nptn-202;Nptn-211;Nptn-207;Nptn-204,Nptn;Nptn;Nptn;Nptn;Nptn;Nptn;Nptn;Nptn;Nptn,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,20,22,20320,ENSMUSG00000032336,conserved gene and region,9,58618678,58618932,255,*,255,20,0.6,0.879917184,0.078431373,1.96E-13,CpGisland,TRUE,NA,NRS
13715,cg13851328,-0.0000711,0.00000933,-7.619308869,3.12E-13,loss,yes,-0.00000496,0.0000158,-0.313030457,0.754468015,neg,ns,-0.003677198,0.004642479,-0.792076504,0.428921756,neg,ns,0.367621924,0.000303934,0.000159654,1.903696342,0.057875623,pos,ns,0.866705652,Atoh8,Atoh8_threeUTR,6,72223851,72223900,72223851,72223852,50,-,CGCGCCAGGGACAGGATGTAGTTACAGGCGATCCTCAGGATGGCCAGTTT,3' UTR,6,72206177,72234537,28361,2,Atoh8-202,10637,Atoh8-202;Atoh8-201;Atoh8-203,Atoh8;Atoh8;Atoh8,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,7,71093,ENSMUSG00000037621,conserved gene but different region,6,72223694,72223852,159,*,159,10,0.65408805,0.588235294,0.062893082,0.00000467,CpGisland,TRUE,NA,NRS
14788,cg11771402,-0.0000117,0.00000244,-4.783940844,0.00000266,loss,ns,-0.0000013,0.00000414,-0.312965521,0.754517302,neg,ns,-0.001554265,0.001213546,-1.280762509,0.201234465,neg,ns,0.696297637,-0.0000718,0.0000417,-1.719546045,0.086513122,neg,ns,0.047480458,Nufip2,Nufip2_Promoter,11,77685942,77685991,77685990,77685991,50,-,GTGCTGACGTTGAAGGCCCGGCCCTGTGAGGTTGCACAGGGTAAGTGGCG,Promoter (<=1kb),11,77686155,77712741,26587,1,Nufip2-201,-213,Nufip2-201;Nufip2-204;Nufip2-202;Nufip2-203,Nufip2;Nufip2;Nufip2;Nufip2,0;0;-1468;-1610,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,10,68564,ENSMUSG00000037857,conserved gene and region,11,77685817,77686243,427,*,427,32,0.597189696,0.870096791,0.074941452,1.51E-20,CpGisland,TRUE,U1,Pr-A
27385,cg14797308,-0.00000414,0.0000139,-0.297657595,0.766163889,loss,ns,-0.00000739,0.0000236,-0.312964526,0.754518057,neg,ns,-0.014688921,0.006922403,-2.12193977,0.034635671,neg,ns,1.460476391,0.000588135,0.000238061,2.470522375,0.014029334,pos,ns,0.811044327,Pou2f1,Pou2f1_Intron,1,165935168,165935217,165935216,165935217,50,+,AAGCTTAATCAGTATGCGCGTGATTAGGGCCTTATGCAAATCTCTCCTCG,"Intron (Pou2f1-208/Pou2f1, intron 1 of 16)",1,165865154,166002678,137525,2,Pou2f1-208,67461,Pou2f1-205;Pou2f1-208;Pou2f1-206;Pou2f1-216;Pou2f1-209;Pou2f1-204;Pou2f1-201;Pou2f1-202;Pou2f1-213;Pou2f1-203;Pou2f1-215;Pou2f1-214;Pou2f1-211;Pou2f1-212,Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,18,18986,ENSMUSG00000026565,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
12209,cg04167324,-0.00000961,0.00000399,-2.405101967,0.016753763,loss,ns,0.00000212,0.00000679,0.31296065,0.754520999,pos,ns,-0.00150559,0.001988323,-0.757216113,0.449495548,neg,ns,0.347274605,0.000119305,0.0000684,1.744779972,0.082014157,pos,ns,0.885192067,Iqch,Iqch_Intron,9,63450648,63450697,63450648,63450649,50,+,CGGCAGTAAGGGACCACAAATAAATGAATGTTTGATAAAATAATCCAAGT,"Intron (Gm16759-204/Gm16759-204, intron 1 of 3)",9,63421455,63602493,181039,2,Iqch-201,151796,Iqch-201;Iqch-203;Iqch-204;Iqch-202;Iqch-206,Iqch;Iqch;Iqch;Iqch;Iqch,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,22,78250,ENSMUSG00000037801,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5162,cg17827472,0.0000494,0.0000107,4.617842709,0.00000569,gain,ns,-0.00000568,0.0000182,-0.312848221,0.754606337,neg,ns,0.003057178,0.005319458,0.574716166,0.565900107,pos,ns,0.247260224,-0.000178006,0.000182936,-0.973050175,0.331287006,neg,ns,0.058236465,Plxna4,Plxna4_fiveUTR,6,32588185,32588234,32588185,32588186,50,-,CGGCTCGCTGCTGCTGTGCATTGAAGCCCGGCCAAGCGCTGCAAAAACTC,Promoter (<=1kb),6,32144268,32588192,443925,2,Plxna4-201,0,Plxna4-201,Plxna4,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,9,243743,ENSMUSG00000029765,conserved gene and region,6,32587622,32588561,940,*,940,111,0.760638298,0.822377755,0.118085106,6.12E-93,CpGisland,TRUE,U3,Pr-B
2160,cg23726036,-0.00000944,0.00000885,-1.066966991,0.286816962,loss,ns,0.0000047,0.000015,0.312621159,0.754778695,pos,ns,0.001211073,0.00440351,0.275024523,0.783480607,pos,ns,0.105971749,-0.0000089,0.000151436,-0.058802357,0.953147417,neg,ns,0.81190227,Pou6f2,Pou6f2_Intron,13,18129818,18129867,18129818,18129819,50,-,CGGTCAATTTAGGACTTATCAAGGGAAATGACACAACAGCTGGAGAATGA,"Intron (Pou6f2-201/Pou6f2, intron 6 of 7)",13,18121098,18382041,260944,2,Pou6f2-201,252174,Pou6f2-201;Pou6f2-202;Pou6f2-204,Pou6f2;Pou6f2;Pou6f2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,18,218030,ENSMUSG00000009734,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11843,cg00993893,0.0000175,0.0000165,1.062620451,0.288781188,gain,ns,-0.00000877,0.000028,-0.312563103,0.754822766,neg,ns,0.014973827,0.008216287,1.822456512,0.069349012,pos,ns,1.158959723,-0.000325239,0.000282557,-1.151054828,0.250596722,neg,ns,0.493365556,Tle3,Tle3_Intron,9,61121086,61121135,61121086,61121087,50,+,CGGAGGGAAGAAAAACTAAATTCACTTGTGAGGCGATTTTATGGCAGAGC,"Intron (Gm33914-201/Gm33914-201, intron 2 of 6)",9,61372366,61418497,46132,1,Tle3-218,-251231,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,30,21887,ENSMUSG00000032280,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
3884,cg16561566,0.000000223,0.00000114,0.195861004,0.844847283,gain,ns,0.000000603,0.00000193,0.312122339,0.755157382,pos,ns,0.000803352,0.000565923,1.419544373,0.156745139,pos,ns,0.804805917,-0.0000368,0.0000195,-1.889659135,0.059736465,neg,ns,0.971657717,Nsd3,Nsd3_Exon,8,25682585,25682634,25682633,25682634,50,-,GCCTGTGTCCGCAAATTCCCCACTGCCATCTTTGAATCAAAAGGATTCCG,"Exon (Nsd3-204/Nsd3, exon 13 of 23)",8,25602284,25714970,112687,1,Nsd3-204,80301,Nsd3-208;Nsd3-204;Nsd3-206;Nsd3-201;Nsd3-205,Nsd3;Nsd3;Nsd3;Nsd3;Nsd3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,14,234135,ENSMUSG00000054823,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
109,cg08362637,-0.00000075,0.0000038,-0.197418975,0.843629062,loss,ns,0.00000201,0.00000646,0.312066657,0.755199658,pos,ns,0.002405004,0.001891434,1.27152432,0.204495325,pos,ns,0.689316617,-0.0000102,0.000065,-0.157243322,0.875155452,neg,ns,0.934448917,Adcy3,Adcy3_Exon,12,4206490,4206539,4206538,4206539,50,-,CATGCTGGTGCAGGTCAGCCACATGGTGAAGCTCACGCTCATGCTGCTCG,"Exon (Adcy3-208/Adcy3, exon 14 of 21)",12,4133103,4213525,80423,1,Adcy3-208,73387,Adcy3-208;Adcy3-202;Adcy3-207;Adcy3-204;Adcy3-201;Adcy3-203;Cenpo-206;Cenpo-202,Adcy3;Adcy3;Adcy3;Adcy3;Adcy3;Adcy3;Cenpo;Cenpo,0;0;0;0;0;3222;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,Exon,4,4,104111,ENSMUSG00000020654,conserved gene and region,12,4206525,4206653,129,*,129,9,0.542635659,0.947755102,0.069767442,0.00000752,CpGisland,TRUE,U11,Tr-P
120,cg02620380,-0.00000103,0.000000714,-1.440108044,0.150845953,loss,ns,-0.000000378,0.00000121,-0.31204548,0.755215736,neg,ns,-0.000646257,0.000355258,-1.819121156,0.069857572,neg,ns,1.15578651,0.00000375,0.0000122,0.306851411,0.759162485,pos,ns,0.983370713,Elavl1,Elavl1_Exon,8,4295486,4295535,4295534,4295535,50,+,CCATTGAAACTGGTAATTGCCTCTTCTGCCTCCGACCGTTTGTCAAACCG,"Exon (Elavl1-201/Elavl1, exon 5 of 6)",8,4285382,4325413,40032,2,Elavl1-201,29878,Elavl1-201;Elavl1-204,Elavl1;Elavl1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,5,15568,ENSMUSG00000040028,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2856,cg22234431,0.000157522,0.0000152,10.35649036,8.82E-22,gain,yes,-0.00000806,0.0000258,-0.311976287,0.755268271,neg,ns,0.031371346,0.007570159,4.144080052,0.0000441,pos,ns,4.355913613,-0.000808277,0.000260337,-3.104732444,0.002080329,neg,ns,0.342813745,Zfp503,Zfp503_Promoter,14,21991339,21991388,21991387,21991388,50,-,TCGGCGGAGGCGCTCAATTAAAAGCCTATCAGTTTGTAAGTAAATCAACG,Promoter (1-2kb),14,21983959,21989601,5643,2,Zfp503-201,-1787,Zfp503-201,Zfp503,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,18,27,218820,ENSMUSG00000039081,mapped to different genes,14,21991208,21991513,306,*,306,17,0.513071895,0.84502924,0.055555556,3.96E-09,CpGisland,TRUE,NA,NRS
26841,cg02222250,0.000000742,0.00000159,0.468124166,0.640024753,gain,ns,0.00000084,0.00000269,0.311944349,0.75529252,pos,ns,0.001063419,0.00078922,1.347429405,0.178825959,pos,ns,0.747569436,-0.0000188,0.0000271,-0.692695359,0.489019331,neg,ns,0.036119731,Lamc1,Lamc1_Exon,1,153332176,153332225,153332224,153332225,50,-,GCATGGTCTGGCTTTGCCACCAGGTGGTGTCGGCCTGGTTGTTGTAGTCG,Promoter (<=1kb),1,153218922,153332786,113865,2,Lamc1-201,561,Lamc1-201,Lamc1,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,6,226519,ENSMUSG00000026478,conserved gene and region,1,153332004,153333079,1076,*,1076,114,0.720260223,0.822001528,0.105947955,2.02E-89,CpGisland,TRUE,U1,Pr-A
9417,cg12833353,0.0000499,0.00000706,7.076565977,9.90E-12,gain,yes,-0.00000374,0.000012,-0.311767225,0.755427009,neg,ns,-0.006121023,0.003512794,-1.742494187,0.082413675,neg,ns,1.084000721,0.000120945,0.000120805,1.001157793,0.317531351,pos,ns,0.691062672,Zbtb16,Zbtb16_Intron,9,48678437,48678486,48678485,48678486,50,+,GGAAATATAATTTACAGTGTGCAGCCAGGCGGCCCATAGTTTCAATCTCG,"Intron (Zbtb16-201/Zbtb16, intron 4 of 6)",9,48654297,48835945,181649,2,Zbtb16-201,157459,Zbtb16-201;Zbtb16-202,Zbtb16;Zbtb16,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,37,235320,ENSMUSG00000066687,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18652,cg24513785,0.000110145,0.0000141,7.800379866,9.50E-14,gain,yes,0.00000748,0.000024,0.311659692,0.755508661,pos,ns,0.027101502,0.007027915,3.856264977,0.000140026,pos,ns,3.853791425,-0.000595314,0.000241689,-2.463134808,0.014315939,neg,ns,0.367262383,Skap1,Skap1_Intron,11,96579250,96579299,96579250,96579251,50,+,CGGCAGGTCAAGTTTACCATCCGTCTTTCAGTGGGACTGAGATGGCAACA,"Intron (Skap1-204/Skap1, intron 4 of 12)",11,96464593,96758941,294349,1,Skap1-204,114657,Skap1-204;Skap1-203;Skap1-209;Skap1-201;Skap1-205;Skap1-206;Skap1-208,Skap1;Skap1;Skap1;Skap1;Skap1;Skap1;Skap1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,40,46,78473,ENSMUSG00000057058,conserved gene and region,11,96578991,96579282,292,*,292,18,0.547945206,0.829545455,0.061643836,2.30E-10,CpGisland,TRUE,U9,En-Pp
7138,cg13623297,0.000000689,0.00000902,0.076390785,0.939157477,gain,ns,-0.00000478,0.0000153,-0.311642585,0.75552165,neg,ns,-0.015100208,0.004490062,-3.363028931,0.000867625,neg,ns,3.061668128,0.000116442,0.000154413,0.754098429,0.451362536,pos,ns,0.682073776,Lsamp,Lsamp_Intron,16,41376855,41376904,41376855,41376856,50,+,CGCCTGGGAAACTGGAAGGATAAGGTGAGCTAAGCTTTTAATTACAAGTA,"Intron (Lsamp-206/Lsamp, intron 2 of 8)",16,39984371,42176295,2191925,1,Lsamp-206,1392484,Lsamp-206;Lsamp-210,Lsamp;Lsamp,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,23,268890,ENSMUSG00000061080,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26374,cg03681470,0.0000216,0.00000325,6.645515039,1.36E-10,gain,yes,0.00000172,0.00000551,0.311583572,0.755566462,pos,ns,0.003875265,0.001615651,2.398577868,0.017049521,pos,ns,1.768287805,-0.0000691,0.0000556,-1.244185796,0.214371094,neg,ns,0.065375818,Nkx2-2,Nkx2-2_Exon,2,147184046,147184095,147184094,147184095,50,-,GGGGGTGCTGGCCGAGCTGTACTGGGCGTTGTACTGCATGTGCTGCAGCG,"Exon (Nkx2-2os-201/Nkx2-2os-201, exon 1 of 6)",2,147177546,147186101,8556,2,Nkx2-2-203,2006,Nkx2-2-203;Nkx2-2-201;Nkx2-2-202;Nkx2-2-204,Nkx2-2;Nkx2-2;Nkx2-2;Nkx2-2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,15,30,18088,ENSMUSG00000027434,conserved gene and region,2,147184037,147184754,718,*,718,60,0.674094708,0.742310675,0.08356546,8.11E-41,CpGisland,TRUE,U3,Pr-B
479,cg23454504,0.0000197,0.00000479,4.103510244,0.0000521,gain,ns,0.00000254,0.00000814,0.311581101,0.755568338,pos,ns,0.005179907,0.002383883,2.172886691,0.030545953,pos,ns,1.515046325,-0.0000406,0.000082,-0.495372258,0.620688331,neg,ns,0.04055588,Dab2,Dab2_fiveUTR,15,6386680,6386729,6386680,6386681,50,+,CGAGTTAATAAACAGTTAAGTTTGGAAGACTCTGCAGACACGTTGAGGGG,5' UTR,15,6299788,6435520,135733,1,Dab2-207,86892,Dab2-207;Dab2-201;Dab2-205;Dab2-209;Dab2-202;Dab2-204;Dab2-203;Dab2-211;Dab2-208;Dab2-206;Dab2-212,Dab2;Dab2;Dab2;Dab2;Dab2;Dab2;Dab2;Dab2;Dab2;Dab2;Dab2,0;0;0;0;0;-19;-47;-48;-50;-2321;-3391,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,3,13132,ENSMUSG00000022150,conserved gene and region,15,6386572,6386721,150,*,150,16,0.62,1.125703565,0.106666667,5.51E-13,CpGisland,TRUE,U3,Pr-B
19310,cg19234729,-0.0000262,0.0000112,-2.334821375,0.020190854,loss,ns,-0.00000593,0.000019,-0.311556323,0.755587154,neg,ns,-0.015012107,0.005575686,-2.692423541,0.007479036,neg,ns,2.126154389,0.000247553,0.000191747,1.291034964,0.19765347,pos,ns,0.741991642,Rara,Rara_Intron,11,98968816,98968865,98968864,98968865,50,-,ATTGATGATGTCAGAGATAAATGACGCTGACAGACGCCTCCTTGTCTGCG,"Intron (Rara-203/Rara, intron 4 of 8)",11,98927818,98974162,46345,1,Rara-203,40998,Rara-203;Rara-204;Rara-201;Rara-207;Rara-202,Rara;Rara;Rara;Rara;Rara,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,12,19401,ENSMUSG00000037992,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
3646,cg21208882,0.000116354,0.0000121,9.638977314,2.11E-19,gain,yes,-0.00000639,0.0000205,-0.31149277,0.755635414,neg,ns,0.026537669,0.006007943,4.417097169,0.0000138,pos,ns,4.858857931,-0.000495237,0.000206613,-2.396935099,0.017124715,neg,ns,0.253314544,Erfl,Erfl_Intron,7,24943256,24943305,24943304,24943305,50,-,AGAAAATTCGATCCTGGGCCTGGAATTAGGTCCCCGGCTTAATCTGAGCG,"Intron (Erfl-201/Erfl, intron 1 of 5)",7,24927445,24944494,17050,2,Erfl-201,1189,Erfl-201,Erfl,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,36,,NA,mapped to different genes,7,24943025,24943315,291,*,291,30,0.656357388,0.97129506,0.103092784,1.48E-23,CpGisland,TRUE,U13,Hc-P
5050,cg24869367,-0.0000133,0.00000249,-5.337470668,0.000000182,loss,yes,0.00000132,0.00000424,0.311449207,0.755668494,pos,ns,-0.003080039,0.001241314,-2.4812741,0.013621308,neg,ns,1.865781203,0.00012024,0.0000427,2.816680866,0.005163489,pos,ns,0.975757705,Nup214,Nup214_Exon,2,32047488,32047537,32047536,32047537,50,-,AGCCCCAGCCTTTACAAGCCCTCTGGGCTCGACGGGAGGCAAAGTGTTCG,"Exon (Nup214-201/Nup214, exon 33 of 36)",2,31974436,32052371,77936,1,Nup214-201,73052,Fam78a-203;Nup214-201;Nup214-208;Nup214-210;Nup214-209;Nup214-203,Fam78a;Nup214;Nup214;Nup214;Nup214;Nup214,0;0;0;0;-3458;-4155,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,227720,ENSMUSG00000001855,conserved gene and region,2,32047482,32047573,92,*,92,8,0.652173913,0.826038159,0.086956522,0.00000628,CpGisland,TRUE,U10,Tr-S
23061,cg00130771,0.00000432,0.00000408,1.057749912,0.290993012,gain,ns,-0.00000216,0.00000693,-0.311297204,0.755783926,neg,ns,-0.005440704,0.002031371,-2.678341066,0.007793321,neg,ns,2.10827746,0.00015289,0.0000699,2.188559225,0.029374769,pos,ns,0.846539042,Taok3,Taok3_Exon,5,117250933,117250982,117250933,117250934,50,+,CGGCGCCAGCACCAGAAGCAGCTGATCGCCCTGGAGAACAAGCTGAAGGC,"Exon (Taok3-203/Taok3, exon 15 of 21)",5,117120129,117275217,155089,1,Taok3-203,130804,Taok3-203;Taok3-210;Taok3-201;Taok3-208;Taok3-202,Taok3;Taok3;Taok3;Taok3;Taok3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,20,330177,ENSMUSG00000061288,conserved gene and region,5,117250755,117251050,296,*,296,22,0.648648649,0.709368192,0.074324324,3.15E-14,CpGisland,TRUE,U10,Tr-S
3904,cg20724446,-0.0000176,0.00000924,-1.898993706,0.058493561,loss,ns,0.00000489,0.0000157,0.311274341,0.755801289,pos,ns,0.000327906,0.004601209,0.071265295,0.943232569,pos,ns,0.025381212,-0.000211823,0.000158235,-1.338658977,0.181662597,neg,ns,0.790570821,Celf4,Celf4_Intron,18,25723535,25723584,25723535,25723536,50,+,CGTATTCACATAGTTAAATTAGTTAGCTGGATAGAAACCTCAGAGATGAT,"Intron (Celf4-202/Celf4, intron 1 of 12)",18,25477632,25753983,276352,2,Celf4-202,30399,Celf4-202;Celf4-201;Celf4-203;Celf4-207;Celf4-206;Celf4-209;Celf4-205,Celf4;Celf4;Celf4;Celf4;Celf4;Celf4;Celf4,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,59,108013,ENSMUSG00000024268,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22719,cg24602691,0.0000626,0.0000226,2.76675127,0.006001787,gain,ns,-0.000012,0.0000384,-0.311260434,0.75581185,neg,ns,0.073522032,0.011258512,6.530350892,2.68E-10,pos,ns,9.571327185,-0.002539302,0.000387179,-6.558465586,2.27E-10,neg,yes,0.534047861,Sox6,Sox6_Intron,7,115825386,115825435,115825434,115825435,50,-,CTATGTCTCTATTTCTCCAGGCTGGACCTCATGAGGTCATCATTGGCACG,"Intron (Sox6-210/Sox6, intron 2 of 15)",7,115470872,116031047,560176,2,Sox6-210,205612,Sox6-210;Sox6-201;Sox6-202;Sox6-204;Sox6-205;Sox6-203;Sox6-212;Sox6-206;Sox6-209;Sox6-214;Sox6-211;Sox6-208,Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,37,57,20679,ENSMUSG00000051910,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
400,cg13735125,-0.00000415,0.00000251,-1.650625488,0.099827781,loss,ns,0.00000133,0.00000427,0.311228457,0.755836134,pos,ns,0.002422801,0.001251282,1.936255316,0.053745195,pos,ns,1.269660357,-0.000103385,0.000043,-2.402537064,0.016869494,neg,ns,0.948279648,Zfhx4,Zfhx4_threeUTR,3,5415139,5415188,5415139,5415140,50,+,CGCTATAGTGAGCTAATGTCCTGAATCCAAAGGCTTCAGAAAATTGCTTT,3' UTR,3,5218554,5415855,197302,1,Zfhx4-201,196585,Zfhx4-203;Zfhx4-201;Zfhx4-205,Zfhx4;Zfhx4;Zfhx4,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,77,80892,ENSMUSG00000025255,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10812,cg01932374,0.00000187,0.00000493,0.378574427,0.705263046,gain,ns,-0.0000026,0.00000837,-0.311170482,0.755880163,neg,ns,0.003117703,0.00245204,1.271473346,0.204513424,pos,ns,0.689278181,-0.000263375,0.0000843,-3.123321879,0.001957084,neg,ns,0.83337239,Carmil3,Carmil3_threeUTR,14,55495377,55495426,55495425,55495426,50,+,ACAAATCCTTCCTCCCCTTCCCTGAAGGGACTTTGTCCAGAAGCTGGCCG,3' UTR,14,55490651,55508272,17622,1,Carmil3-212,4726,Carmil3-212;Carmil3-205;Carmil3-201;Carmil3-209;Carmil3-208;Carmil3-210;Carmil3-206;Carmil3-203;Carmil3-202;Carmil3-211,Carmil3;Carmil3;Carmil3;Carmil3;Carmil3;Carmil3;Carmil3;Carmil3;Carmil3;Carmil3,0;0;0;0;0;2511;0;0;-1585;-2206,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,2,268747,ENSMUSG00000022211,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3411,cg27643609,0.00000266,0.000014,0.190524368,0.849022957,gain,ns,-0.00000738,0.0000237,-0.310977742,0.756026544,neg,ns,-0.009604517,0.006956368,-1.380679824,0.168372054,neg,ns,0.773729991,0.000501178,0.000239229,2.094974124,0.036984557,pos,ns,0.238150003,A830031A19Rik,A830031A19Rik_Intron,11,24061918,24061967,24061966,24061967,50,+,GTGCTGATTTATTGCAGAAGCCTCTGGTCATTTCCATATATTGAAATGCG,"Intron (A830031A19Rik-201/A830031A19Rik, intron 1 of 2)",11,24048955,24075054,26100,2,A830031A19Rik-201,13087,A830031A19Rik-201,A830031A19Rik,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,23,268391,NA,mapped to different genes,11,24061919,24062118,200,*,200,12,0.615,0.639658849,0.06,0.000000585,CpGisland,TRUE,NA,NRS
13011,cg23575211,-0.0000243,0.00000561,-4.339922535,0.0000193,loss,ns,-0.00000296,0.00000953,-0.310856682,0.75611849,neg,ns,-0.006849893,0.002792019,-2.453383355,0.014702192,neg,ns,1.832617904,0.000310624,0.000096,3.235086887,0.001347384,pos,ns,0.872910808,Gm4842,Gm4842_Intergenic_upstream,18,69125275,69125324,69125275,69125276,50,-,CGTTCTAATAACAGCTGGGCCGCAGATGGGGCCTGCAGTCATTGTAGAAA,Distal Intergenic,18,69256288,69257122,835,1,Gm4842-201,-131013,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,10,225681,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20006,cg05714161,0.00000206,0.00000268,0.768751031,0.44262639,gain,ns,-0.00000142,0.00000455,-0.310744085,0.756204012,neg,ns,-0.001941776,0.001334358,-1.455213953,0.146621902,neg,ns,0.833801152,0.0000908,0.0000459,1.977752522,0.048841987,pos,ns,0.936823384,Nhsl2,Nhsl2_Exon,X,102076220,102076269,102076220,102076221,50,+,CGTGAACCCCAAGTCCACCCTGAGGCGGAGGCGGACCATTATTGGATTCT,"Exon (Nhsl2-202/Nhsl2, exon 3 of 3)",20,101849385,102076276,226892,1,Nhsl2-202,226835,Nhsl2-202;Nhsl2-201;Nhsl2-207;Nhsl2-206;Nhsl2-205;Nhsl2-204;Rtl5-202;Rtl5-204,Nhsl2;Nhsl2;Nhsl2;Nhsl2;Nhsl2;Nhsl2;Rtl5;Rtl5,0;0;0;0;0;0;-4916;-4916,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,7,100042480,ENSMUSG00000079481,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9103,cg24919478,-0.00000413,0.00000109,-3.796933918,0.000176234,loss,ns,0.000000574,0.00000185,0.3107332,0.75621228,pos,ns,-0.000140803,0.000540935,-0.260295453,0.794808686,neg,ns,0.099737395,-0.0000369,0.0000186,-1.983560387,0.048186817,neg,ns,0.036404204,Samd4,Samd4_fiveUTR,14,46882897,46882946,46882897,46882898,50,+,CGCTCCCTGCCAAGCCCATGATGTAATGGTGTATGTTAATCAGTAGCATG,Promoter (<=1kb),14,46882854,47103150,220297,1,Samd4-201,43,Samd4-201;Samd4-211;Samd4-202;Samd4-208;Samd4-206,Samd4;Samd4;Samd4;Samd4;Samd4,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,16,74480,ENSMUSG00000021838,conserved gene but different region,14,46882545,46882898,354,*,354,34,0.700564972,0.854829546,0.096045198,1.59E-25,CpGisland,TRUE,U3,Pr-B
17593,cg11290280,-0.0000038,0.00000106,-3.591480771,0.000382192,loss,ns,0.000000559,0.0000018,0.310666728,0.75626277,pos,ns,0.000438261,0.000527107,0.831446448,0.406361432,pos,ns,0.391087518,-0.0000353,0.0000181,-1.946643311,0.052480571,neg,ns,0.973135325,Madd,Madd_Exon,2,91163981,91164030,91163981,91163982,50,+,CGGCTTCAGTAACAATCTCCATTAGAGTATTTAGCCCAAATACTGGGACA,"Exon (Madd-212/Madd, exon 15 of 33)",2,91137360,91179315,41956,2,Madd-211,15285,Madd-211;Madd-212;Madd-206;Madd-207;Madd-208;Madd-213;Madd-205;Madd-203;Madd-204;Madd-209;Madd-210;Madd-214;Madd-202;Madd-215;Madd-216;Madd-224;Madd-226;Madd-227;Madd-223;Madd-217;Madd-201;Madd-222,Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;11699,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,7,228355,ENSMUSG00000040687,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17488,cg20275558,-0.000000335,0.00000354,-0.094593273,0.924699005,loss,ns,0.00000187,0.00000601,0.310656897,0.756270237,pos,ns,0.003288812,0.001761381,1.867178095,0.062820395,pos,ns,1.201899338,-0.0000146,0.0000606,-0.241513129,0.809317115,neg,ns,0.446039224,Dlg2,Dlg2_Exon,7,90477071,90477120,90477071,90477072,50,-,CGCCAACTCATCCTGCATCAAGTGCCCATTGAGTAGCACTGTCACTTTAA,Promoter (<=1kb),7,90476672,90479068,2397,1,Dlg2-211,399,Dlg2-211;Dlg2-215;Dlg2-216;Dlg2-217;Tmem126b-201;Tmem126b-202,Dlg2;Dlg2;Dlg2;Dlg2;Tmem126b;Tmem126b,0;0;-52;0;-1070;-1076,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,21,23859,ENSMUSG00000052572,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9802,cg17538314,0.00000382,0.0000047,0.813639948,0.416475744,gain,ns,-0.00000248,0.00000798,-0.310613007,0.756303574,neg,ns,0.003186323,0.002337304,1.363247123,0.17379391,pos,ns,0.759965445,-0.000169049,0.0000804,-2.103131231,0.036260046,neg,ns,0.922915311,Tbc1d5,Tbc1d5_Intron,17,50898066,50898115,50898066,50898067,50,+,CGATTTAGCCATTAGCATCTACTTATGTTTGTCAGAACAGTGCATCCGTG,"Intron (Tbc1d5-201/Tbc1d5, intron 13 of 21)",17,50733124,51179168,446045,2,Tbc1d5-201,281053,Tbc1d5-201;Tbc1d5-207;Tbc1d5-205;Tbc1d5-208;Tbc1d5-203,Tbc1d5;Tbc1d5;Tbc1d5;Tbc1d5;Tbc1d5,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,14,72238,ENSMUSG00000023923,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15214,cg24615802,-0.000000559,0.000000374,-1.497332368,0.135324271,loss,ns,0.000000197,0.000000635,0.310285641,0.756552249,pos,ns,0.000416645,0.000185953,2.240589933,0.025760664,pos,ns,1.58904295,-0.0000136,0.00000639,-2.122731991,0.034568645,neg,ns,0.008935403,Rab11fip4,Rab11fip4_Exon,11,79704641,79704690,79704689,79704690,50,+,GGGCTGTCAGGCGCGGTGGCCAAGTGGTAAGGCGTCGGTCTCGTAAACCG,"Exon (Gm11205-201/Gm11205-201, exon 1 of 3)",11,79660562,79683498,22937,1,Rab11fip4-202,44079,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,268451,ENSMUSG00000017639,mapped to different genes,11,79704048,79704724,677,*,677,72,0.677991137,0.937024222,0.106351551,7.43E-57,CpGisland,TRUE,NA,NRS
25524,cg17722256,-0.00000322,0.000000896,-3.5878133,0.000387388,loss,ns,0.000000472,0.00000152,0.310160685,0.756647175,pos,ns,-0.000239441,0.000446132,-0.536703248,0.591857568,neg,ns,0.227782795,-0.00000798,0.0000153,-0.520096661,0.603367414,neg,ns,0.974915228,Gm45499,Gm45499_Intergenic_upstream,7,137147535,137147584,137147535,137147536,50,+,CGCTATGCAATAATGGGTCAAAAATTCATTCAAGTTTTACTGCTGTTCCG,Distal Intergenic,7,137167820,137168099,280,1,Gm45499-201,-20236,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,4,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14959,cg25625146,0.00000715,0.00000245,2.921639294,0.003737729,gain,ns,0.00000129,0.00000416,0.310127354,0.756672496,pos,ns,0.002295952,0.001218236,1.88465219,0.060412163,pos,ns,1.218875611,-0.0000638,0.0000419,-1.522389632,0.128930869,neg,ns,0.082070426,Pvalb,Pvalb_fiveUTR,15,78204129,78204178,78204177,78204178,50,+,AAGTCTGTCATCGACATCCTGCAACTGTTTGAGCGGGCAGAGCAAGTGCG,Promoter (<=1kb),15,78191114,78204237,13124,2,Pvalb-201,59,Pvalb-201;Pvalb-202,Pvalb;Pvalb,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,4,19293,ENSMUSG00000005716,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
18914,cg09254458,-0.0000216,0.00000771,-2.793926859,0.005531369,loss,ns,0.00000406,0.0000131,0.30999732,0.756771284,pos,ns,-0.007037261,0.003839705,-1.832760761,0.067797132,neg,ns,1.168788674,0.0000538,0.000132047,0.407684753,0.683786533,pos,ns,0.870163137,Dach1,Dach1_Intron,14,97891429,97891478,97891477,97891478,50,-,CTAAATCTCGCTCTACAATCTCTTCTTATCTTGTTGCATAAACCCTTGCG,"Intron (Dach1-201/Dach1, intron 6 of 10)",14,97786853,98169543,382691,2,Dach1-201,278065,Dach1-201;Dach1-202;Dach1-203,Dach1;Dach1;Dach1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,76,13134,ENSMUSG00000055639,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21142,cg15242494,0.000118072,0.0000186,6.331925248,8.49E-10,gain,yes,0.00000982,0.0000317,0.309947603,0.756809056,pos,ns,0.037111242,0.009280882,3.998676099,0.0000797,pos,ns,4.098608365,-0.001388575,0.000319169,-4.350599332,0.0000185,neg,ns,0.38087466,Gm17304,Gm17304_Intron,5,106560754,106560803,106560754,106560755,50,+,CGCTCCATGATGAGATGCTAAATGAAAAGCTGGTGCGACACACGCAGTTT,"Intron (Gm28050-202/Gm28050-202, intron 1 of 2)",5,106609098,106609201,104,1,Gm17304-201,-48295,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,35,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
26720,cg06735354,-0.00000508,0.00000768,-0.661664586,0.508677715,loss,ns,-0.00000405,0.0000131,-0.309917792,0.756831705,neg,ns,0.005930078,0.00382484,1.550412117,0.122062902,pos,ns,0.913416307,-0.000264732,0.000131536,-2.012618571,0.045019225,neg,ns,0.872965034,Huwe1,Huwe1_Exon,X,151890781,151890830,151890781,151890782,50,+,CGTTGGTGTAGTTACAGTGCAAGCAACAATAGCACTATTGATTCTGCCTG,"Exon (Huwe1-201/Huwe1, exon 39 of 83)",20,151803327,151935417,132091,1,Huwe1-201,87454,Huwe1-201;Huwe1-202;Huwe1-211,Huwe1;Huwe1;Huwe1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,22,28,59026,ENSMUSG00000025261,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21489,cg26462021,-0.00000655,0.00000563,-1.163723337,0.245431046,loss,ns,0.00000296,0.00000957,0.309896335,0.756848007,pos,ns,-0.000562734,0.002802631,-0.200787936,0.840996066,neg,ns,0.075206036,0.00010849,0.0000964,1.125621515,0.261196447,pos,ns,0.82742529,Bcl11b,Bcl11b_Intron,12,107952429,107952478,107952429,107952430,50,-,CGTGAAAAGAATTCTAAATAAAACACAAACATGGAATTTGGCAACGCCAC,"Intron (Bcl11b-201/Bcl11b, intron 3 of 3)",12,107910403,108003602,93200,2,Bcl11b-201,51124,Bcl11b-201;Bcl11b-202;Bcl11b-203,Bcl11b;Bcl11b;Bcl11b,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,39,58208,ENSMUSG00000048251,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3662,cg14539532,0.0000633,0.0000112,5.664329781,3.37E-08,gain,yes,-0.00000588,0.000019,-0.30984857,0.756884297,neg,ns,0.007806475,0.00555931,1.404216538,0.161255446,pos,ns,0.792485608,-0.000133489,0.000191184,-0.698221183,0.485562294,neg,ns,0.51566937,Erfl,Erfl_Promoter,7,24951308,24951357,24951356,24951357,50,-,GATGAGACGCATTACGCACTTAATCCGCCTGATTGAATGTTTTGCTTTCG,Promoter (6-7kb),7,24927445,24944494,17050,2,Erfl-201,-6863,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,29,36,,NA,mapped to different genes,7,24951274,24951467,194,*,194,18,0.567010309,1.164,0.092783505,1.92E-13,CpGisland,TRUE,U13,Hc-P
27131,cg22239755,0.0000188,0.00001,1.867316072,0.062801071,gain,ns,0.00000529,0.0000171,0.309773141,0.756941606,pos,ns,0.01929725,0.004998804,3.860373441,0.000137799,pos,ns,3.860753977,-0.000483882,0.000171908,-2.814764809,0.005193588,neg,ns,0.293352713,Dhx35,Dhx35_Intergenic_downstream,2,159002930,159002979,159002930,159002931,50,-,CGCTGGGTAATGGCCCCTGTAAAGTGTTAATTGCCTATTGAGACTGCAGA,Distal Intergenic,2,158850629,158857368,6740,1,Dhx35-204,152350,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,14,14,71715,ENSMUSG00000027655,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20763,cg24353110,0.0000526,0.00000721,7.290408075,2.59E-12,gain,yes,-0.00000379,0.0000123,-0.309695604,0.757000518,neg,ns,0.010418526,0.003589469,2.902525816,0.003967025,pos,ns,2.401535044,-0.000200424,0.000123442,-1.623638168,0.105469424,neg,ns,0.044758038,Rgs7bp,Rgs7bp_fiveUTR,13,105054186,105054235,105054234,105054235,50,+,TTTTTGCGCCCATTCGGTGCAGAACTCATGCATACACATCCACCAAGCCG,Promoter (<=1kb),13,104945904,105054930,109027,2,Rgs7bp-201,695,Rgs7bp-201,Rgs7bp,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,7,52882,ENSMUSG00000021719,conserved gene and region,13,105054061,105054769,709,*,709,77,0.682651622,0.937379808,0.108603667,1.56E-61,CpGisland,TRUE,U3,Pr-B
5741,cg00106940,0.000073,0.00000985,7.411394344,1.20E-12,gain,yes,-0.00000518,0.0000167,-0.309604008,0.757070113,neg,ns,0.007350363,0.004900299,1.499982447,0.134636677,pos,ns,0.870836616,-0.0000083,0.000168521,-0.049267898,0.960737529,neg,ns,0.028543597,Sox2,Sox2_Exon,3,34650752,34650801,34650752,34650753,50,-,CGGCCCCGGCGGAAAACCAAGACGCTCATGAAGAAGGATAAGTACACGCT,Promoter (<=1kb),3,34650405,34652461,2057,1,Sox2-201,347,Sox2-201,Sox2,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,62,20674,ENSMUSG00000074637,mapped to different genes,3,34650151,34651388,1238,*,1238,126,0.673667205,0.899335824,0.10177706,2.40E-96,CpGisland,TRUE,U3,Pr-B
22773,cg10596314,0.0000248,0.00000838,2.963334695,0.003278962,gain,ns,0.00000441,0.0000142,0.309559749,0.757103742,pos,ns,0.005826933,0.004170391,1.39721524,0.163348102,pos,ns,0.786885906,-0.000140353,0.000143419,-0.978621513,0.328530109,neg,ns,0.170992743,Dmbx1,Dmbx1_Intron,4,115935541,115935590,115935589,115935590,50,-,TAAATCAGCCACTAATTGGGGTAATTAGCCCCCCGCAGGCTAATGGGCCG,"Intron (Dmbx1-203/Dmbx1, intron 1 of 4)",4,115915119,115939926,24808,2,Dmbx1-203,4336,Dmbx1-203;Dmbx1-202,Dmbx1;Dmbx1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,42,140477,ENSMUSG00000028707,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
1234,cg00704763,0.0000479,0.00000609,7.863299758,6.25E-14,gain,yes,0.0000032,0.0000104,0.309519611,0.757134241,pos,ns,0.006607017,0.003032661,2.178620536,0.030112878,pos,ns,1.521247732,-0.0000752,0.000104293,-0.720660729,0.471661355,neg,ns,0.686281413,Bcor,Bcor_Intron,X,12085478,12085527,12085526,12085527,50,-,CTAATGCATAATGCACAGCGCCTGGAAGCCCGGCCATTAGCGGCCTGTCG,"Intron (Bcor-201/Bcor, intron 1 of 13)",20,12036743,12160355,123613,2,Bcor-201,74828,Bcor-202;Bcor-203;Bcor-204;Bcor-206;Bcor-201;Bcor-207;Bcor-205,Bcor;Bcor;Bcor;Bcor;Bcor;Bcor;Bcor,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,56,74,71458,ENSMUSG00000040363,conserved gene and region,X,12085326,12085682,357,*,357,18,0.546218487,0.675994109,0.050420168,5.80E-09,CpGisland,TRUE,U13,Hc-P
6933,cg02601407,0.000000954,0.0000023,0.415212316,0.678273711,gain,ns,0.00000121,0.0000039,0.309515928,0.757137039,pos,ns,0.00190819,0.00114359,1.66859532,0.096207231,pos,ns,1.016792284,0.00000302,0.0000393,0.076906613,0.938747448,pos,ns,0.074166675,Rev3l,Rev3l_fiveUTR,10,39732129,39732178,39732177,39732178,50,+,CATGGCAACAAGAGCTGCAGCCTGGGACCGAGGAGCCCGTGTGATTCCCG,Promoter (<=1kb),10,39732118,39875211,143094,1,Rev3l-201,11,Rev3l-201;Rev3l-204;Rev3l-207,Rev3l;Rev3l;Rev3l,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,7,19714,ENSMUSG00000019841,conserved gene and region,10,39732157,39733134,978,*,978,126,0.715746421,1.007554945,0.128834356,6.64E-111,CpGisland,TRUE,U1,Pr-A
5693,cg08151534,0.000000706,0.0000015,0.469239198,0.639228519,gain,ns,-0.000000791,0.00000256,-0.309479758,0.757164523,neg,ns,0.000335672,0.000748936,0.448198617,0.654322944,pos,ns,0.184207851,-0.0000173,0.0000258,-0.672324937,0.501877649,neg,ns,0.970825453,Mapkap1,Mapkap1_Intron,2,34571584,34571633,34571584,34571585,50,-,CGATACACTGGTACATTAGAGCAGTAAGGAAGCATGTTTGATGAGCCACA,"Intron (Mapkap1-204/Mapkap1, intron 7 of 10)",2,34406862,34623475,216614,1,Mapkap1-204,164722,Mapkap1-204;Mapkap1-202;Mapkap1-201;Mapkap1-209;Mapkap1-203,Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,59,227743,ENSMUSG00000038696,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24020,cg19134574,-0.00000145,0.000000658,-2.203394677,0.028302108,loss,ns,-0.000000346,0.00000112,-0.309437139,0.757196907,neg,ns,-0.000168918,0.000327374,-0.515978842,0.606237004,neg,ns,0.217357559,-0.0000155,0.0000113,-1.379002701,0.168888054,neg,ns,0.013343513,Ctdspl2,Ctdspl2_fiveUTR,2,121956451,121956500,121956499,121956500,50,+,TCCGGGTCCCTGTCCGTGCGGTGCAGCAGGTCGGTAGGCGGGAAATGGCG,Promoter (<=1kb),2,121956460,121994196,37737,1,Ctdspl2-208,0,Ctdspl2-201;Ctdspl2-204;Ctdspl2-208;Ctdspl2-209;Ctdspl2-207;Ctdspl2-206;Ctdspl2-203;Mageb3-201,Ctdspl2;Ctdspl2;Ctdspl2;Ctdspl2;Ctdspl2;Ctdspl2;Ctdspl2;Mageb3,0;0;0;0;0;0;0;-359,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,8,329506,ENSMUSG00000033411,conserved gene and region,2,121956274,121956500,227,*,227,20,0.678414097,0.765727779,0.088105727,1.95E-14,CpGisland,TRUE,U1,Pr-A
22008,cg08576043,0.000000199,0.00000208,0.095547317,0.923941842,gain,ns,0.0000011,0.00000354,0.309419593,0.75721024,pos,ns,-0.0000695,0.001037343,-0.067005828,0.946620257,neg,ns,0.023824206,-0.00000423,0.0000357,-0.118641858,0.905635942,neg,ns,0.957150783,Dhx30,Dhx30_Exon,9,110107927,110107976,110107975,110107976,50,+,TCAGAGCCACTCACCTGCCATGTTGGAAATGTTAACGTTCAGCCTTTTCG,"Exon (Dhx30-204/Dhx30, exon 5 of 23)",9,110084320,110117422,33103,2,Dhx30-215,9446,Dhx30-215;Dhx30-219;Dhx30-212;Dhx30-214;Dhx30-203;Dhx30-204;Dhx30-202;Dhx30-224;Dhx30-223;Dhx30-222;Dhx30-207;Dhx30-225;Dhx30-210,Dhx30;Dhx30;Dhx30;Dhx30;Dhx30;Dhx30;Dhx30;Dhx30;Dhx30;Dhx30;Dhx30;Dhx30;Dhx30,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,6,72831,ENSMUSG00000032480,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17403,cg06291274,-0.00000276,0.00000205,-1.348166716,0.178589006,loss,ns,-0.00000107,0.00000348,-0.308917115,0.757592084,neg,ns,0.000142841,0.001018529,0.140242441,0.888559517,pos,ns,0.051313477,-0.0000264,0.000035,-0.75360863,0.451656246,neg,ns,0.958422974,Tpm3,Tpm3_Exon,3,90098404,90098453,90098404,90098405,50,-,CGCCTGCTTTCTAATGAGCTGAAGCTAACGCTGCATGATCTGTGTGACTG,"Exon (Tpm3-203/Tpm3, exon 8 of 8)",3,90072651,90100902,28252,1,Tpm3-204,25753,Tpm3-204;Tpm3-201;Tpm3-202;Tpm3-203;Tpm3-210,Tpm3;Tpm3;Tpm3;Tpm3;Tpm3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,6,59069,ENSMUSG00000027940,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23513,cg17916358,-0.00000119,0.000000977,-1.214305279,0.225555382,loss,ns,0.000000512,0.00000166,0.30882618,0.757661195,pos,ns,-0.000297731,0.000486103,-0.612486184,0.540665149,neg,ns,0.267071624,-0.0000174,0.0000167,-1.038322885,0.29992895,neg,ns,0.969829438,Cacna1c,Cacna1c_Exon,6,118741884,118741933,118741884,118741885,50,-,CGAGAACCAAGTTAAGTACAAAAAATGACCCTATGATGATTAGTGTAACA,"Exon (Cacna1c-205/Cacna1c, exon 4 of 42)",6,118587240,119196231,608992,2,Cacna1c-207,454298,Cacna1c-207;Cacna1c-205;Cacna1c-215;Cacna1c-224;Cacna1c-225;Cacna1c-226;Cacna1c-227;Cacna1c-202;Cacna1c-201;Cacna1c-203;Cacna1c-212;Cacna1c-216;Cacna1c-210;Cacna1c-206;Cacna1c-208;Cacna1c-213;Cacna1c-217;Cacna1c-219;Cacna1c-220;Cacna1c-209;Cacna1c-204;Cacna1c-214;Cacna1c-222,Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,13,15,12288,ENSMUSG00000051331,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1969,cg19117097,0.0000714,0.00001,7.129087979,7.14E-12,gain,yes,-0.00000525,0.000017,-0.308799358,0.757681579,neg,ns,0.006580666,0.004983198,1.320570717,0.187618636,pos,ns,0.726724026,-0.0000794,0.000171372,-0.463549503,0.643295834,neg,ns,0.525874548,Rarb,Rarb_Intron,14,16714468,16714517,16714468,16714469,50,+,CGGATTGAACCATCCTGCATAACCGAGGTGCTGACAAGTCCTGATTACCC,"Intron (Rarb-203/Rarb, intron 1 of 3)",14,16509065,16819156,310092,2,Rarb-203,104639,Rarb-203;Rarb-204,Rarb;Rarb,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,16,218772,ENSMUSG00000017491,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12924,cg18254993,-0.0000164,0.00000996,-1.643282861,0.101338244,loss,ns,0.00000523,0.0000169,0.308722145,0.757740263,pos,ns,-0.004026342,0.004959274,-0.811881401,0.417482655,neg,ns,0.379361563,0.00031035,0.000170549,1.819709529,0.069767637,pos,ns,0.416477785,Arid5b,Arid5b_Promoter,10,68279698,68279747,68279698,68279699,50,-,CGCCAAGGGCGCTCTCAAATGATAATGTGTTTATATAACCCAGCGCTACA,Promoter (1-2kb),10,68092520,68278740,186221,2,Arid5b-204,-1007,Arid5b-204;Arid5b-201;Arid5b-202,Arid5b;Arid5b;Arid5b,0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,16,33,71371,ENSMUSG00000019947,conserved gene and region,10,68279593,68279827,235,*,235,14,0.50212766,0.955007257,0.059574468,5.38E-08,CpGisland,TRUE,U1,Pr-A
9409,cg09624466,0.0000597,0.00000629,9.488865598,6.46E-19,gain,yes,-0.0000033,0.0000107,-0.30871649,0.757744561,neg,ns,0.004685184,0.003129767,1.49697512,0.135417172,pos,ns,0.868326261,-0.000014,0.000107632,-0.129986131,0.896661703,neg,ns,0.065287474,Otx2,Otx2_Exon,14,48668868,48668917,48668916,48668917,50,-,CTGTATGTGTACTCAAATGTGGCCGTCCTTGGGATTTACAGCAATTAACG,"Exon (Otx2os1-207/Otx2os1-207, exon 1 of 3)",14,48657851,48673819,15969,2,Otx2-210,4902,Otx2-209;Otx2-201;Otx2-210;Otx2-202;Otx2-208;Otx2-207;Otx2-205;Otx2-203;Otx2-211,Otx2;Otx2;Otx2;Otx2;Otx2;Otx2;Otx2;Otx2;Otx2,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,15,18424,ENSMUSG00000021848,conserved gene but different region,14,48668843,48669002,160,*,160,14,0.575,1.066666667,0.0875,3.49E-10,CpGisland,TRUE,U13,Hc-P
4692,cg20931982,0.00000335,0.00000944,0.354519933,0.723190308,gain,ns,-0.00000495,0.000016,-0.30867368,0.757777098,neg,ns,-0.004882138,0.004698434,-1.039098943,0.299568495,neg,ns,0.523503863,0.0000148,0.000161579,0.091563142,0.927104275,pos,ns,0.771757444,Mecom,Mecom_Intron,3,30113425,30113474,30113425,30113426,50,+,CGACCTGAAGCCCACTCCCTTGGGTCAGTGCATGCTGGGAGGGGAAATGA,"Intron (Mecom-212/Mecom, intron 1 of 15)",3,29951299,30509733,558435,2,Mecom-212,396259,Mecom-212;Mecom-203;Mecom-210;Mecom-213;Mecom-207;Mecom-208;Mecom-211,Mecom;Mecom;Mecom;Mecom;Mecom;Mecom;Mecom,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,80,14013,ENSMUSG00000027684,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13783,cg06706916,-0.0000424,0.00000902,-4.704228024,0.00000384,loss,ns,0.00000473,0.0000153,0.308629216,0.757810893,pos,ns,-0.013909209,0.00449017,-3.097702239,0.002128774,neg,ns,2.671870514,0.000253639,0.000154417,1.642566667,0.101486548,pos,ns,0.846898467,Rfx7,Rfx7_Exon,9,72611687,72611736,72611687,72611688,50,-,CGTCTTGTGTGTGAGTGGGCCCAGAAAGTGTTAAGCCAACCATTTGACAC,"Exon (Rfx7-202/Rfx7, exon 7 of 9)",9,72532240,72622829,90590,1,Rfx7-202,79447,Gm18014-201;Rfx7-202;Rfx7-201;Rfx7-203;Rfx7-205;Rfx7-204,Gm18014;Rfx7;Rfx7;Rfx7;Rfx7;Rfx7,-4490;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,8,319758,ENSMUSG00000037674,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23649,cg12083229,-0.000000049,0.000000341,-0.143884398,0.885685244,loss,ns,-0.000000179,0.000000579,-0.308498091,0.757910556,neg,ns,0.000271667,0.000169553,1.602253324,0.11011803,pos,ns,0.958141566,-0.0000102,0.00000583,-1.75376793,0.080458488,neg,ns,0.007742893,Fbxl14,Fbxl14_Exon,6,119479977,119480026,119480025,119480026,50,-,TACCACAAGTCGGTGTGGCGGGGGGTGGAGGCCAAGCTGCACCTGCGCCG,Promoter (<=1kb),6,119479668,119482630,2963,1,Fbxl14-201,309,Fbxl14-201;Wnt5b-204;Wnt5b-203,Fbxl14;Wnt5b;Wnt5b,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,101358,ENSMUSG00000030019,conserved gene and region,6,119478978,119480269,1292,*,1292,186,0.743034056,1.054462484,0.143962848,4.39E-174,CpGisland,TRUE,NA,NRS
26097,cg09364986,-0.0000674,0.0000125,-5.39999518,0.000000133,loss,yes,0.00000654,0.0000212,0.308487889,0.75791831,pos,ns,-0.006695591,0.006208316,-1.07848749,0.281654715,neg,ns,0.550282973,-0.000113158,0.000213503,-0.530006329,0.596486941,neg,ns,0.593897327,Gm2505,Gm2505_Promoter,3,143864443,143864492,143864443,143864444,50,+,CGAGTAGCTGTTTCCAATGTCAATAATTATAACTTGAAATGAAATTTAGT,Promoter (8-9kb),3,143872995,143873819,825,1,Gm2505-201,-8503,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,4,37,100039938,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26477,cg04684870,-0.0000102,0.00000386,-2.632998675,0.008887627,loss,ns,0.00000202,0.00000655,0.308358891,0.758016362,pos,ns,-0.000201614,0.001919608,-0.105028873,0.916420821,neg,ns,0.037905052,0.0000137,0.000066,0.207391299,0.835840446,pos,ns,0.940553996,Casz1,Casz1_Intergenic_upstream,4,148736998,148737047,148736998,148736999,50,+,CGAATATGATGTTTAATTAGCAATACCAATAAATTAATAGGAGAATCTTG,Distal Intergenic,4,148804429,148945129,140701,1,Casz1-201,-67382,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,14,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2996,cg13315803,-0.0000169,0.00000617,-2.73821274,0.006534523,loss,ns,0.00000323,0.0000105,0.308345292,0.758026699,pos,ns,-0.007350963,0.003071849,-2.393009341,0.017305592,neg,ns,1.761813538,-0.0000061,0.000105641,-0.057777138,0.953963373,neg,ns,0.803361272,Lrmda,Lrmda_Intron,14,22270147,22270196,22270147,22270148,50,-,CGTTGTGTGAATTACTCAGACAGGATGCCTTTGTGAAGTATGGGGGTTTG,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,250435,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206,Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21656,cg16019406,0.00000323,0.0000035,0.921362004,0.357577925,gain,ns,0.00000183,0.00000595,0.308236356,0.758109505,pos,ns,0.0013883,0.001744069,0.79601202,0.426634175,pos,ns,0.369944359,-0.0000613,0.00006,-1.022122323,0.307519978,neg,ns,0.899641235,Zfhx3,Zfhx3_fiveUTR,8,108792220,108792269,108792268,108792269,50,+,GCAATGAAAGCTCCACGCAGGCCTTACCATGGAAGGCTGTGACTCGCCCG,5' UTR,8,107942644,108961630,1018987,1,Zfhx3-204,849576,Zfhx3-204;Zfhx3-202;Zfhx3-201,Zfhx3;Zfhx3;Zfhx3,0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,11,177,11906,ENSMUSG00000038872,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4992,cg07828089,0.0000935,0.0000261,3.587671236,0.00038759,gain,ns,-0.0000136,0.0000443,-0.308192627,0.758142745,neg,ns,0.085775518,0.012969898,6.613430335,1.64E-10,pos,yes,9.784041276,-0.002500751,0.000446034,-5.606641088,4.57E-08,neg,yes,0.569018634,Sap130,Sap130_Exon,18,31711674,31711723,31711674,31711675,50,+,CGGAACCCCTGGAAAGCTGCTTACCACCACTTTCAGAGGTACAGTGACGT,"Exon (Sap130-202/Sap130, exon 18 of 22)",18,31634371,31723061,88691,1,Sap130-202,77303,Sap130-202;Sap130-208;Sap130-205;Sap130-201,Sap130;Sap130;Sap130;Sap130,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,4,269003,ENSMUSG00000024260,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14536,cg14461910,-0.0000145,0.00000393,-3.69478778,0.000260087,loss,ns,0.00000206,0.00000667,0.308148763,0.758176088,pos,ns,0.000804532,0.00195468,0.411592873,0.680922278,pos,ns,0.166902456,-0.0000807,0.0000672,-1.200145862,0.230999042,neg,ns,0.074402253,Zbtb1,Zbtb1_fiveUTR,12,76370372,76370421,76370420,76370421,50,+,GAAACTTGTTGCAACAAACAGGCGACCGCGGGTGCCCCTAGCAGCCAGCG,Promoter (<=1kb),12,76370266,76396950,26685,1,Zbtb1-201,106,Zbtb1-201;Zbtb25-201;Zbtb25-205;Zbtb25-204;Zbtb25-203;Zbtb25-206,Zbtb1;Zbtb25;Zbtb25;Zbtb25;Zbtb25;Zbtb25,0;-908;-1373;-770;-979;-908,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,5,268564,ENSMUSG00000033454,conserved gene and region,12,76369872,76370962,1091,*,1091,133,0.747937672,0.884434638,0.121906508,2.50E-113,CpGisland,TRUE,U1,Pr-A
27880,cg18023545,-0.0000134,0.0000032,-4.184800036,0.0000372,loss,ns,-0.00000168,0.00000544,-0.30809458,0.758217277,neg,ns,-0.001166574,0.001593178,-0.732230522,0.464581103,neg,ns,0.332938459,0.00000341,0.0000548,0.062231738,0.950418393,pos,ns,0.945332568,Prox1,Prox1_Intergenic_downstream,1,190092190,190092239,190092190,190092191,50,-,CGCACAGATGTTGAAAACAAGTTCAGATGTAGCGACAGATGGTATTTGAT,Distal Intergenic,1,190122453,190169399,46947,2,Prox1-201,77209,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,59,19130,ENSMUSG00000010175,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27729,cg17971729,-0.00000255,0.00000212,-1.20552554,0.22891985,loss,ns,0.00000111,0.00000359,0.308066893,0.758238324,pos,ns,0.002233183,0.001053042,2.120696108,0.034741116,pos,ns,1.459156229,-0.000108215,0.0000362,-2.988211982,0.003030406,neg,ns,0.955866193,Cdc42bpa,Cdc42bpa_Exon,1,180093965,180094014,180093965,180093966,50,+,CGATTAAAAAACCAATCCAAAGAGCTGAAAGACGCACACTGTCAGAGGAA,"Exon (Cdc42bpa-203/Cdc42bpa, exon 13 of 35)",1,179960472,180163156,202685,1,Cdc42bpa-203,133493,Cdc42bpa-203;Cdc42bpa-204;Cdc42bpa-208;Cdc42bpa-201;Cdc42bpa-202;Cdc42bpa-218;Cdc42bpa-210,Cdc42bpa;Cdc42bpa;Cdc42bpa;Cdc42bpa;Cdc42bpa;Cdc42bpa;Cdc42bpa,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,10,226751,ENSMUSG00000026490,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14130,cg25001103,0.0000429,0.00000627,6.841177438,4.20E-11,gain,yes,-0.00000328,0.0000107,-0.30802857,0.758267456,neg,ns,0.007089286,0.003121032,2.271455634,0.023804648,pos,ns,1.623338234,-0.000101367,0.000107332,-0.94442268,0.34568918,neg,ns,0.163975226,Hoxd10,Hoxd10_Exon,2,74692533,74692582,74692533,74692534,50,+,CGGCCAAGCCGCAGCTCTCCGCTGCCCAGCTGCAGATGGAAAAGAAGATG,Promoter (<=1kb),2,74691924,74695105,3182,1,Hoxd10-201,609,Hoxd10-201,Hoxd10,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,21,24,15430,ENSMUSG00000050368,conserved gene and region,2,74692453,74693054,602,*,602,35,0.609634552,0.625742457,0.058139535,1.01E-18,CpGisland,TRUE,U13,Hc-P
21128,cg05401701,-0.0000282,0.0000156,-1.810741484,0.071148852,loss,ns,0.00000816,0.0000265,0.307873378,0.758385435,pos,ns,-0.006207034,0.007763037,-0.799562623,0.424576477,neg,ns,0.372044071,-0.000143349,0.00026697,-0.536946907,0.591689447,neg,ns,0.314351159,Gm3191,Gm3191_Intergenic_downstream,12,106480054,106480103,106480054,106480055,50,+,CGCTCCCATTATGCAGGCCTTGCAAATTTCTGATTTGAATATTAACCCTT,Distal Intergenic,12,106459150,106459495,346,1,Gm3191-201,20904,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,11,13,100041191,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
14393,cg15602590,-0.0000105,0.00000291,-3.600593218,0.000369564,loss,ns,0.00000152,0.00000495,0.307820835,0.75842538,pos,ns,0.005190317,0.001449344,3.581148225,0.000397,pos,ns,3.401209354,-0.000265666,0.0000498,-5.330065878,0.000000189,neg,yes,0.109682848,Asic4,Asic4_Promoter,1,75447925,75447974,75447925,75447926,50,-,CGGGAGGCTAAATGAGGGAGATTATCACCCAACTGCAGCCGGGCAGAGAG,Promoter (2-3kb),1,75450436,75474340,23905,1,Asic4-202,-2511,Asic4-202;Asic4-201;Gmppa-201;Gmppa-202;Gmppa-205;Gmppa-207;Gmppa-203,Asic4;Asic4;Gmppa;Gmppa;Gmppa;Gmppa;Gmppa,0;0;11995;11982;6305;5759;5701,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,11,241118,ENSMUSG00000033007,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
9566,cg08996087,0.0000629,0.00000586,10.72385193,4.97E-23,gain,yes,-0.00000307,0.00000996,-0.307750023,0.758479215,neg,ns,0.011326387,0.002918356,3.881084946,0.000127074,pos,ns,3.895944354,-0.000279093,0.000100362,-2.780863789,0.005753155,neg,ns,0.082471419,Foxg1,Foxg1_Promoter,12,49381732,49381781,49381780,49381781,50,-,TCAGTAAATGTTTACGTAACCTGTCCTTTCCCAAGAATCCGGTTACACCG,Promoter (<=1kb),12,49382660,49384364,1705,1,Foxg1-202,-928,Foxg1-202;Foxg1-203;Foxg1-204;Foxg1-201;Gm43517-201,Foxg1;Foxg1;Foxg1;Foxg1;Gm43517,0;-1019;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,11,27,15228,ENSMUSG00000020950,mapped to different genes,12,49381746,49381860,115,*,115,11,0.556521739,1.280364373,0.095652174,1.73E-08,CpGisland,TRUE,U13,Hc-P
19892,cg16906290,0.0000151,0.00000896,1.689172826,0.09219178,gain,ns,0.00000468,0.0000152,0.307690313,0.75852461,pos,ns,0.002313456,0.004459372,0.518785187,0.604280676,pos,ns,0.218761293,-0.000110436,0.000153357,-0.720121901,0.471992547,neg,ns,0.410516238,Gm43103,Gm43103_Intergenic_upstream,5,101521181,101521230,101521229,101521230,50,-,ATCTGTTAAAAAGCCATTGTCTGAGAAAGTGTTCAGCTAGCTGGAGAGCG,Distal Intergenic,5,101505528,101506329,802,2,Gm43103-201,-14901,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,10,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19286,cg11884042,-0.000000234,0.000000644,-0.362933965,0.71690155,loss,ns,-0.000000337,0.00000109,-0.307657336,0.758549682,neg,ns,-0.00045748,0.000320764,-1.42621911,0.154811364,neg,ns,0.810197163,0.00000156,0.000011,0.141610444,0.887479699,pos,ns,0.987093813,Foxp1,Foxp1_threeUTR,6,98941037,98941086,98941037,98941038,50,-,CGAGGACGGCCTCGTTGAATATGGCGGCCACGTTTAAACTCTTCATCATC,3' UTR,6,98925338,99266515,341178,2,Foxp1-206,325429,Foxp1-206;Foxp1-204;Foxp1-220;Foxp1-230;Foxp1-225;Foxp1-201;Foxp1-205;Foxp1-207;Foxp1-208;Foxp1-226;Foxp1-228;Foxp1-221;Foxp1-222;Foxp1-210,Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,9,87,108655,ENSMUSG00000030067,mapped to different genes,6,98940999,98941068,70,*,70,8,0.6,1.281464531,0.114285714,0.000000774,CpGisland,TRUE,U10,Tr-S
4238,cg09770040,-0.00000391,0.00000207,-1.887059496,0.060086502,loss,ns,0.00000108,0.00000352,0.307555551,0.758627068,pos,ns,0.000947605,0.001030599,0.91946973,0.358564824,pos,ns,0.445432318,-0.0000523,0.0000354,-1.474878778,0.141259993,neg,ns,0.955268926,Trio,Trio_Exon,15,27824081,27824130,27824081,27824082,50,+,CGACCCTTTCGAATTAAGGTTTTTGGGTCCCACACTTGGAAGGATTCCTG,"Exon (Trio-201/Trio, exon 30 of 57)",15,27730651,28025848,295198,2,Trio-201,201718,Trio-201;Trio-205;Trio-210;Trio-209,Trio;Trio;Trio;Trio,0;0;0;-298,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,11,223435,ENSMUSG00000022263,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8837,cg19249188,-0.0000502,0.00000613,-8.186402791,7.08E-15,loss,yes,0.0000032,0.0000104,0.307433138,0.75872014,pos,ns,-0.006888279,0.003052565,-2.256554396,0.024732189,neg,ns,1.606737437,0.000177548,0.000104977,1.691295844,0.091785312,pos,ns,0.931429172,Gm6580,Gm6580_Promoter,14,46019867,46019916,46019915,46019916,50,-,GACTTTGTTTTAAATCATAATAGCAACCAGGCTGTAATCACATTAGAGCG,Promoter (7-8kb),14,46027428,46028784,1357,1,Gm6580-201,-7561,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,3,625377,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12261,cg17136263,0.000027,0.00000743,3.636695452,0.000323287,gain,ns,-0.00000388,0.0000126,-0.30717448,0.758916814,neg,ns,0.001441781,0.003699634,0.389709181,0.697019207,pos,ns,0.156755254,0.0000572,0.00012723,0.449871523,0.653117491,pos,ns,0.048508331,Xkr6,Xkr6_Exon,14,63606670,63606719,63606670,63606671,50,-,CGAGAGCAGCTCGATGCACATCTGCCACTGCTGCAACACCTCCTCGTGCT,Promoter (<=1kb),14,63606675,63666182,59508,1,Xkr6-203,0,Xkr6-201;Xkr6-203;Xkr6-205,Xkr6;Xkr6;Xkr6,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,11,219149,ENSMUSG00000035067,conserved gene and region,14,63606019,63607249,1231,*,1231,130,0.728675873,0.7956862,0.105605199,1.15E-101,CpGisland,TRUE,NA,NRS
5535,cg08153906,-0.000112201,0.000015,-7.461533969,8.68E-13,loss,yes,0.00000785,0.0000255,0.30711224,0.758964141,pos,ns,-0.023790506,0.007484192,-3.178767219,0.001628371,neg,ns,2.788246554,0.000567836,0.000257381,2.206208565,0.028102525,pos,ns,0.6449098,Hdac9,Hdac9_Intron,12,34215822,34215871,34215870,34215871,50,+,AGTCATTGAGAAAGCCCAGTCCTTTGGTACAATTAGATATTTATACACCG,"Intron (Hdac9-205/Hdac9, intron 18 of 24)",12,34047580,34528328,480749,2,Hdac9-205,312457,Hdac9-205;Hdac9-204;Hdac9-206;Hdac9-210;Hdac9-207,Hdac9;Hdac9;Hdac9;Hdac9;Hdac9,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,19,31,79221,ENSMUSG00000004698,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1774,cg13008291,0.00000869,0.00000167,5.194573776,0.000000373,gain,yes,0.000000872,0.00000284,0.306745476,0.759243047,pos,ns,0.001471747,0.000832791,1.76724634,0.078170813,pos,ns,1.106955371,-0.00000162,0.0000286,-0.05665171,0.954859138,neg,ns,0.048372136,Kctd1,Kctd1_Promoter,18,15151255,15151304,15151303,15151304,50,-,CCAAAGTCCCAGCCATACCCTCCTTAGCAAATAATAACAAACCCAAACCG,Promoter (<=1kb),18,14968685,15151446,182762,2,Kctd1-201,142,Kctd1-201,Kctd1,0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,6,24,106931,ENSMUSG00000036225,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
16387,cg24148424,0.0000128,0.00000672,1.900220354,0.058331848,gain,ns,0.0000035,0.0000114,0.306595537,0.759357078,pos,ns,-0.001541398,0.003344292,-0.460904137,0.645190566,neg,ns,0.190311992,-0.0000849,0.00011501,-0.73824708,0.460922823,neg,ns,0.782622229,Gm26913,Gm26913_Intergenic_upstream,13,84805325,84805374,84805373,84805374,50,-,AACCATATCCATGGCAACCAACCGTACCATTCCAACCCACATCAATGACG,Distal Intergenic,13,84690210,84690941,732,2,Gm26913-201,-114433,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,9,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26623,cg20595756,0.00000504,0.00000276,1.823389067,0.069207368,gain,ns,0.00000144,0.0000047,0.306573038,0.759374188,pos,ns,0.001143962,0.001375491,0.83167504,0.406232554,pos,ns,0.391225277,-0.0000227,0.0000473,-0.480505059,0.631207217,neg,ns,0.965187017,Pex14,Pex14_Intron,4,149040295,149040344,149040295,149040296,50,-,CGGTGGGGAAGTGCCGAGCAAACACCAGAGACATTTGTCTCTAAATTGCT,"Intron (Pex14-201/Pex14, intron 3 of 8)",4,148960535,149099876,139342,2,Pex14-201,59532,Pex14-201;Pex14-202;Pex14-205;Pex14-203;Pex14-204,Pex14;Pex14;Pex14;Pex14;Pex14,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,41,48,56273,ENSMUSG00000028975,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13523,cg26322742,-0.0000106,0.00000385,-2.763754452,0.006055821,loss,ns,0.00000201,0.00000654,0.306556535,0.75938674,pos,ns,-0.00184099,0.001916452,-0.960623898,0.337489963,neg,ns,0.471739139,0.0000598,0.0000659,0.906995825,0.365113478,pos,ns,0.960729908,Gm10172,Gm10172_Intergenic_downstream,7,71145762,71145811,71145810,71145811,50,+,CCGTGTCACTGGAATCAATCTATTAACCTACATTAACTGGATATGTGACG,Distal Intergenic,7,71332363,71332921,559,2,Gm10172-201,187110,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,31,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17134,cg02233270,-0.000100216,0.0000175,-5.731308492,2.36E-08,loss,yes,-0.00000911,0.0000297,-0.306523381,0.759411955,neg,ns,-0.029138252,0.00870279,-3.348150726,0.000913833,neg,ns,3.039133393,0.000608375,0.000299288,2.032739446,0.042930776,pos,ns,0.554800106,Arl4c,Arl4c_threeUTR,1,88699478,88699527,88699526,88699527,50,+,AGCCTCTTTCAAGTAAACTGTGAAGTGCCTGAGTACCAGTGACCATGACG,3' UTR,1,88673125,88701876,28752,2,Arl4c-201,2349,Arl4c-201;Arl4c-203;Arl4c-202,Arl4c;Arl4c;Arl4c,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,3,320982,ENSMUSG00000049866,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7746,cg20061887,0.00000285,0.00000462,0.61766849,0.537247348,gain,ns,0.0000024,0.00000784,0.30647919,0.759445564,pos,ns,-0.0000339,0.002297905,-0.01473876,0.988250078,neg,ns,0.005133143,-0.000258264,0.000079,-3.268137796,0.001204146,neg,ns,0.886941374,Arhgap15,Arhgap15_Intron,2,44068276,44068325,44068324,44068325,50,+,TTTTCTGCCTTTGGCTTCCTGTGCCCTTGATGTTCCCATGAGTTTTGCCG,"Intron (Arhgap15-203/Arhgap15, intron 8 of 14)",2,43748824,44395953,647130,1,Arhgap15-203,319452,Arhgap15-203;Arhgap15-202;Arhgap15-201;Arhgap15-204,Arhgap15;Arhgap15;Arhgap15;Arhgap15,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,72,78,76117,ENSMUSG00000049744,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10993,cg07572554,-0.00000499,0.0000045,-1.10691085,0.269190657,loss,ns,-0.00000234,0.00000765,-0.306432452,0.759481111,neg,ns,-0.005799108,0.002241946,-2.586640459,0.010147148,neg,ns,1.993655992,0.0000995,0.0000771,1.290847626,0.197718354,pos,ns,0.895715678,Gm12520,Gm12520_Intergenic_upstream,4,56088973,56089022,56088973,56088974,50,+,CGAACAGCTCTTGCAAACCAGCATGAAGTGAACAGATTGCATGGTGGCTG,Distal Intergenic,4,56162940,56163255,316,1,Gm12520-201,-73918,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,3,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19926,cg07601771,-0.0000014,0.00000214,-0.651567866,0.515162722,loss,ns,0.00000111,0.00000364,0.306345716,0.75954708,pos,ns,0.001606044,0.001066152,1.506393093,0.132984582,pos,ns,0.876198707,-0.000049,0.0000367,-1.336722812,0.182293311,neg,ns,0.958835973,Ogt,Ogt_Exon,X,101654458,101654507,101654458,101654459,50,-,CGAATGAACCCCTGTGAACGGTTGACTAGATGAGTAATCTGATTGACTGG,"Exon (Ogt-204/Ogt, exon 4 of 4)",20,101640060,101682940,42881,1,Ogt-202,14398,Ogt-202;Ogt-206;Ogt-201;Ogt-205;Ogt-204;Ogt-207;Ogt-203,Ogt;Ogt;Ogt;Ogt;Ogt;Ogt;Ogt,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,Exon,32,33,108155,ENSMUSG00000034160,conserved gene and region,X,101654404,101654477,74,*,74,8,0.608108108,1.174603175,0.108108108,0.0000012,CpGisland,TRUE,U10,Tr-S
23397,cg15811097,-0.0000365,0.00000561,-6.516621709,2.91E-10,loss,yes,0.00000292,0.00000953,0.306335455,0.759554885,pos,ns,0.000482328,0.002791079,0.172810625,0.862913058,pos,ns,0.064032959,-0.000111191,0.000096,-1.158424106,0.247582642,neg,ns,0.932455111,Ptprf,Ptprf_Intron,4,118245254,118245303,118245254,118245255,50,+,CGAACTGTAGATGGATAAGAAGTGAAAAGGACCAACCTTCTCGCTGATCT,"Intron (Ptprf-201/Ptprf, intron 7 of 32)",4,118208213,118291405,83193,2,Ptprf-201,46102,Ptprf-201;Ptprf-207,Ptprf;Ptprf,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,9,19268,ENSMUSG00000033295,conserved gene and region,4,118245159,118245296,138,*,138,12,0.630434783,0.895135135,0.086956522,9.53E-09,CpGisland,TRUE,U11,Tr-P
27513,cg19871388,0.0000394,0.00000422,9.329243729,2.11E-18,gain,yes,-0.0000022,0.00000717,-0.306289759,0.759589641,neg,ns,0.008183649,0.002099823,3.897304517,0.000119232,pos,ns,3.923608436,-0.000195032,0.0000722,-2.700799111,0.007297576,neg,ns,0.036325443,Sall4,Sall4_fiveUTR,2,168767168,168767217,168767168,168767169,50,+,CGATTTATCATGAGCCCTGACAGCTGATTGGCCTGGGTCCAAGACCTCAG,Promoter (<=1kb),2,168748332,168767201,18870,2,Sall4-201,0,Sall4-202;Sall4-201;Sall4-203;Sall4-206;Sall4-204;Sall4-205,Sall4;Sall4;Sall4;Sall4;Sall4;Sall4,-139;0;0;-1922;0;-51,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,6,99377,ENSMUSG00000027547,conserved gene but different region,2,168766712,168767169,458,*,458,44,0.65720524,0.893262411,0.096069869,7.02E-33,CpGisland,TRUE,NA,NRS
20812,cg13329685,-0.0000016,0.00000543,-0.294769047,0.768367615,loss,ns,0.00000283,0.00000923,0.306287158,0.759591619,pos,ns,-0.004529422,0.002705032,-1.674442951,0.095052087,neg,ns,1.022038342,0.000071,0.000093,0.76370338,0.445624866,pos,ns,0.920828515,Kcnd3,Kcnd3_Intron,3,105458373,105458422,105458421,105458422,50,+,CATTTAATGAGAACTCATCTACCCTCTCCCAATTTAAATTGGTAATAACG,"Intron (Kcnd3-202/Kcnd3, intron 1 of 6)",3,105452330,105674002,221673,1,Kcnd3-202,6043,Kcnd3-202;Kcnd3-204;Kcnd3-203;Kcnd3-201,Kcnd3;Kcnd3;Kcnd3;Kcnd3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,9,56543,ENSMUSG00000040896,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7252,cg27633444,0.0000299,0.0000122,2.461130502,0.014394586,gain,ns,0.00000632,0.0000206,0.306205695,0.75965358,pos,ns,0.009137831,0.006049392,1.510537198,0.131925021,pos,ns,0.879672829,-0.000362559,0.000208038,-1.742752957,0.082368366,neg,ns,0.78908133,Nkx3-2,Nkx3-2_Intergenic_downstream,5,41738581,41738630,41738581,41738582,50,-,CGACTCTCTTAAATCCACAACACTGGTGGGTGGTAAGGTAGAGGGATAAT,Distal Intergenic,5,41761483,41764501,3019,2,Nkx3-2-201,25920,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,3,12020,ENSMUSG00000049691,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1469,cg26269295,-0.00000298,0.0000093,-0.319811237,0.749326857,loss,ns,-0.00000484,0.0000158,-0.306184556,0.75966966,neg,ns,0.007391,0.004630637,1.59610881,0.111483382,pos,ns,0.952789866,-0.000531338,0.000159247,-3.336562957,0.000951398,neg,ns,0.826309661,Sema3a,Sema3a_Promoter,5,13125301,13125350,13125301,13125302,50,-,CGCCCTGGTACAACCCATCTGCCTTGAATCTAGTGCTCCGCTGGGGCTGC,Promoter (<=1kb),5,13125414,13310754,185341,1,Sema3a-207,-113,Gm10108-201;Sema3a-207;Sema3a-208;Sema3a-206,Gm10108;Sema3a;Sema3a;Sema3a,-3535;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,9,20346,ENSMUSG00000028883,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15751,cg18434861,-0.000014,0.00000719,-1.941094931,0.053152879,loss,ns,-0.00000374,0.0000122,-0.306055501,0.759767824,neg,ns,-0.00573796,0.003577152,-1.604057972,0.109719558,neg,ns,0.959715952,-0.0000112,0.000123018,-0.09113714,0.927442483,neg,ns,0.780999461,Pkdcc,Pkdcc_Intergenic_upstream,17,83135822,83135871,83135870,83135871,50,+,GTTTATTTATGTTCCAAAGCAGGTCCACTAGAGAAGGACCATCATAGTCG,Distal Intergenic,17,83215292,83225070,9779,1,Pkdcc-204,-79421,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,10,106522,ENSMUSG00000024247,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19283,cg27296662,-0.00000445,0.00000146,-3.044156611,0.002533278,loss,ns,-0.000000759,0.00000248,-0.306020183,0.759794689,neg,ns,-0.000786127,0.00072701,-1.081315685,0.280397167,neg,ns,0.552226378,0.00000922,0.000025,0.368870847,0.712475793,pos,ns,0.956843146,Foxp1,Foxp1_threeUTR,6,98939751,98939800,98939751,98939752,50,+,CGTGGCTGCTCTGCATGTTTTTAATAAGGGAAGGGTTACTGTGTAAGAAA,3' UTR,6,98925338,99266515,341178,2,Foxp1-206,326715,Foxp1-206;Foxp1-204;Foxp1-220;Foxp1-230;Foxp1-225;Foxp1-201;Foxp1-205;Foxp1-207;Foxp1-208;Foxp1-226;Foxp1-228;Foxp1-221;Foxp1-222;Foxp1-217,Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,9,87,108655,ENSMUSG00000030067,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21226,cg05690537,0.000000965,0.000000992,0.97284395,0.331389341,gain,ns,0.000000516,0.00000169,0.305985658,0.759820951,pos,ns,-0.000318512,0.000493816,-0.64500143,0.519403305,neg,ns,0.284495291,0.00000497,0.000017,0.292522655,0.77008273,pos,ns,0.972499352,Dcaf1,Dcaf1_Exon,9,106863088,106863137,106863136,106863137,50,+,GAACTGTGCCACCTTTAATCCTACAGATGATCTTGTCTTAAATGATGGCG,"Exon (Dcaf1-202/Dcaf1, exon 18 of 23)",9,106821874,106880443,58570,1,Dcaf1-202,41214,Dcaf1-202;Dcaf1-201;Dcaf1-203;Manf-203,Dcaf1;Dcaf1;Dcaf1;Manf,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,321006,ENSMUSG00000040325,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12934,cg05118387,0.0000131,0.00000255,5.143241744,0.00000048,gain,yes,0.00000132,0.00000433,0.305951408,0.759847004,pos,ns,0.001375134,0.001268031,1.084464387,0.279001622,pos,ns,0.554393273,0.0000647,0.0000436,1.483835857,0.138868475,pos,ns,0.064563972,Ntn1,Ntn1_Promoter,11,68399812,68399861,68399860,68399861,50,-,CGCTGACCATTCTGAAACGCCAAATTAATTACTAAGCACTGAATCAGGCG,Promoter (<=1kb),11,68209364,68400823,191460,2,Ntn1-202,962,Ntn1-202,Ntn1,0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,1,6,18208,ENSMUSG00000020902,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
10615,cg11616693,0.0000806,0.0000124,6.500063313,3.20E-10,gain,yes,-0.00000644,0.0000211,-0.305937428,0.759857639,neg,ns,0.023778115,0.006169662,3.854038761,0.000141247,pos,ns,3.850021184,-0.000642821,0.000212174,-3.029687195,0.002654113,neg,ns,0.39360913,Acin1,Acin1_Exon,14,54678798,54678847,54678846,54678847,50,-,AGGAGGCAGCAGGGAAGCCACTCCCTCAGGATGGATCATCTCGTCCTCCG,"Exon (Acin1-201/Acin1, exon 4 of 19)",14,54642161,54686931,44771,2,Acin1-201,8084,Acin1-201;Acin1-218;Acin1-203;Acin1-206;Acin1-212;Acin1-210,Acin1;Acin1;Acin1;Acin1;Acin1;Acin1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,22,56215,ENSMUSG00000022185,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10017,cg22348014,-0.00000092,0.000000824,-1.116397521,0.265116587,loss,ns,-0.000000428,0.0000014,-0.305782439,0.759975538,neg,ns,-0.0000597,0.000410347,-0.145369723,0.884513441,neg,ns,0.053295563,-0.0000112,0.0000141,-0.790556461,0.42980722,neg,ns,0.017034184,Jade2,Jade2_Promoter,11,51858213,51858262,51858261,51858262,50,+,TTCTCCCTGCGTCAAAAAGACGTTTCTTTGCAAATAACAGCCTGGAGGCG,Promoter (<=1kb),11,51813455,51857653,44199,2,Jade2-202,-560,Jade2-201;Jade2-202;Jade2-203;Jade2-204,Jade2;Jade2;Jade2;Jade2,0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,4,6,76901,ENSMUSG00000020387,conserved gene and region,11,51858180,51858418,239,*,239,21,0.527196653,1.276125095,0.087866109,4.12E-15,CpGisland,TRUE,NA,NRS
13244,cg10916192,-0.0000324,0.0000127,-2.55613059,0.011060954,loss,ns,-0.00000658,0.0000215,-0.305720304,0.760022806,neg,ns,0.048114231,0.006301379,7.635507908,2.81E-13,pos,yes,12.55132244,-0.001728612,0.000216704,-7.976836658,2.93E-14,neg,yes,0.501307329,Nlgn2,Nlgn2_Intron,11,69836086,69836135,69836086,69836087,50,-,CGCCAGCCCGCGGGTGGCTCTCTGCAGGTGTCAATTTATTCCAGAGATGA,"Intron (Nlgn2-202/Nlgn2, intron 1 of 7)",11,69823122,69837784,14663,2,Nlgn2-202,1649,Nlgn2-201;Nlgn2-202;Nlgn2-203;Tmem256-203;Tmem256-201;Tmem256-205;Tmem256-204;Tmem256-202,Nlgn2;Nlgn2;Nlgn2;Tmem256;Tmem256;Tmem256;Tmem256;Tmem256,0;0;0;-2379;-2389;-2420;-2428;-2503,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,17,216856,ENSMUSG00000051790,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
1216,cg05187459,0.0000691,0.0000153,4.519215191,0.00000884,gain,ns,-0.00000794,0.000026,-0.305592934,0.760119703,neg,ns,0.031312215,0.007615487,4.11164964,0.0000504,pos,ns,4.297885464,-0.000572241,0.000261896,-2.184993721,0.029637747,neg,ns,0.211593248,Bcor,Bcor_Intron,X,12068298,12068347,12068298,12068299,50,+,CGTTTTGCAAGCAACATTCCTACAGAAAATGGCACACGTCATAAAAAGAG,"Intron (Bcor-202/Bcor, intron 1 of 14)",20,12036740,12080553,43814,2,Bcor-202,12206,Bcor-202;Bcor-203;Bcor-204;Bcor-206;Bcor-201;Bcor-207;Bcor-205,Bcor;Bcor;Bcor;Bcor;Bcor;Bcor;Bcor,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,56,74,71458,ENSMUSG00000040363,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17614,cg26627360,-0.00000156,0.00000232,-0.671369261,0.502485281,loss,ns,0.0000012,0.00000394,0.305568234,0.760138493,pos,ns,-0.001739732,0.001154119,-1.507411363,0.13272362,neg,ns,0.877051781,0.0000613,0.0000397,1.545651088,0.12320907,pos,ns,0.954390432,Elavl2,Elavl2_Exon,4,91253273,91253322,91253321,91253322,50,-,GACCTGCAGTACTCTGTCTCCCAGACGGTATCCATTGAGGCTAGCTATCG,"Exon (Elavl2-204/Elavl2, exon 6 of 6)",4,91250763,91372034,121272,2,Elavl2-204,118712,Elavl2-204;Elavl2-201;Elavl2-207;Elavl2-208;Elavl2-202;Elavl2-209;Elavl2-210;Elavl2-206;Elavl2-203;Elavl2-205,Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,31,15569,ENSMUSG00000008489,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2662,cg14337109,0.0000824,0.0000116,7.082643724,9.53E-12,gain,yes,0.00000604,0.0000198,0.305559015,0.760145506,pos,ns,0.004562097,0.005791988,0.787656455,0.431499505,pos,ns,0.365019699,0.000202397,0.000199186,1.016122971,0.310363217,pos,ns,0.244847782,Ahi1,Ahi1_Exon,10,21054987,21055036,21055035,21055036,50,+,GCTCTTTATGACTACACAGCGAATCGATCAGATGAACTAACCATCCATCG,"Exon (Ahi1-201/Ahi1, exon 20 of 24)",10,20952547,21080429,127883,1,Ahi1-201,102440,Ahi1-201;Ahi1-203;Ahi1-206;Ahi1-204;Ahi1-202,Ahi1;Ahi1;Ahi1;Ahi1;Ahi1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,52906,ENSMUSG00000019986,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4802,cg11259608,0.00000136,0.00000248,0.547620072,0.584346859,gain,ns,-0.00000129,0.00000421,-0.305552502,0.760150461,neg,ns,0.002548396,0.001234347,2.064570313,0.039795138,pos,ns,1.400169987,-0.000114901,0.0000424,-2.706797886,0.007170061,neg,ns,0.930670837,Mynn,Mynn_threeUTR,3,30611559,30611608,30611607,30611608,50,+,ACCTGTGGGAAGGCATTTGCTGTCTCTAGTTCTCTTATCACTCATTCTCG,3' UTR,3,30602065,30619873,17809,1,Mynn-202,9494,Mynn-202;Mynn-205;Mynn-201;Mynn-206;Mynn-203,Mynn;Mynn;Mynn;Mynn;Mynn,0;0;0;0;-1903,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,2,80732,ENSMUSG00000037730,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16210,cg05730419,-0.0000181,0.00000659,-2.73928795,0.006513701,loss,ns,0.00000342,0.0000112,0.30541707,0.760253497,pos,ns,0.003743569,0.003282116,1.140596129,0.254918439,pos,ns,0.593598749,-0.000296419,0.000112872,-2.62615797,0.009064191,neg,ns,0.586878784,Lhx1,Lhx1_Intergenic_upstream,11,84591490,84591539,84591490,84591491,50,+,CGAGCTGACTGCTCTGTGATATAAAAAAATGACAAGTCCTGGCTTAATCT,Distal Intergenic,11,84518284,84525535,7252,2,Lhx1-201,-65955,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,20,23,16869,ENSMUSG00000018698,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11816,cg01804664,0.0000882,0.0000117,7.564090158,4.47E-13,gain,yes,0.00000605,0.0000198,0.305326441,0.760322448,pos,ns,0.010885605,0.005802546,1.876004819,0.061594133,pos,ns,1.21046065,-0.000253644,0.000199549,-1.271085615,0.204651132,neg,ns,0.291082073,Camk2a,Camk2a_Promoter,18,60925505,60925554,60925553,60925554,50,-,AGGCAGGCAGGTGTTGGGGAGGCAGTTACCGGGGCAACGGGAACAGGGCG,Promoter (<=1kb),18,60925618,60988152,62535,1,Camk2a-203,-113,Camk2a-203;Camk2a-206;Camk2a-201;Camk2a-205;Camk2a-207,Camk2a;Camk2a;Camk2a;Camk2a;Camk2a,0;-78;0;-171;-1395,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,7,12322,ENSMUSG00000024617,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17592,cg03184811,-0.00000759,0.00000307,-2.472750627,0.013943892,loss,ns,-0.00000159,0.00000521,-0.305322043,0.760325794,neg,ns,-0.00304972,0.001526773,-1.997493765,0.046645223,neg,ns,1.33119283,0.00011327,0.0000525,2.157287754,0.031751436,pos,ns,0.925182973,Madd,Madd_Exon,2,91158407,91158456,91158407,91158408,50,-,CGGTGCTAACTTCAGAATCCTGACTTGAGCTGCGGATCATAACAGCTGGA,"Exon (Madd-211/Madd, exon 20 of 32)",2,91137360,91179315,41956,2,Madd-211,20859,Madd-211;Madd-212;Madd-206;Madd-207;Madd-208;Madd-213;Madd-205;Madd-203;Madd-204;Madd-209;Madd-210;Madd-214;Madd-202;Madd-215;Madd-216;Madd-224;Madd-226;Madd-227;Madd-218;Madd-219;Madd-223;Madd-217;Madd-201,Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd;Madd,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;-3456;-3612;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,7,228355,ENSMUSG00000040687,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19914,cg27171716,0.0000736,0.0000108,6.784528378,5.91E-11,gain,yes,-0.00000562,0.0000184,-0.305198856,0.76041952,neg,ns,0.024819212,0.005396169,4.599413136,0.00000618,pos,ns,5.208924794,-0.000777313,0.000185574,-4.188697219,0.0000366,neg,ns,0.714405445,Ogt,Ogt_Exon,X,101653434,101653483,101653434,101653435,50,+,CGGACAGCTAACATGAATTGCACTTCACTGCAGCTTTAGAGATCGGTTTA,"Exon (Ogt-204/Ogt, exon 4 of 4)",20,101640060,101682940,42881,1,Ogt-202,13374,Ogt-202;Ogt-206;Ogt-201;Ogt-205;Ogt-204;Ogt-207;Ogt-203,Ogt;Ogt;Ogt;Ogt;Ogt;Ogt;Ogt,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,32,33,108155,ENSMUSG00000034160,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21915,cg11968701,0.000000283,0.000000475,0.595389575,0.552017483,gain,ns,-0.000000246,0.000000807,-0.30513767,0.760466074,neg,ns,-0.000474322,0.000236334,-2.006999299,0.045617631,neg,ns,1.340867273,0.00000848,0.00000813,1.043907916,0.297341348,pos,ns,0.992177286,Rtl1,Rtl1_Exon,12,109712531,109712580,109712531,109712532,50,+,CGTGGCGCGTTCGCTTTATTTATGGCGCACATTACACGGTCGACCTCTTT,"Exon (Mir323-201/Mir323-201, exon 1 of 1)",12,109589193,109600330,11138,2,Rtl1-201,-112201,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,9,353326,ENSMUSG00000085925,mapped to different genes,12,109712531,109712603,73,*,73,10,0.561643836,1.763285024,0.136986301,2.44E-09,CpGisland,TRUE,NA,NRS
22489,cg12991729,0.0000393,0.00000458,8.576639549,4.74E-16,gain,yes,0.00000237,0.00000778,0.305051008,0.760532013,pos,ns,0.005826434,0.002278375,2.557276478,0.011025348,pos,ns,1.957607696,-0.0000838,0.0000784,-1.069793939,0.285544324,neg,ns,0.097341563,Gm12830,Gm12830_Promoter,4,114821945,114821994,114821993,114821994,50,-,TAATGCTTTATTAAGCGGTCTCAGCTACAACGGCGTGCATGCCAATTACG,Promoter (<=1kb),4,114821722,114856166,34445,1,Gm12830-201,223,Gm12830-201,Gm12830,0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,6,26,433746,ENSMUSG00000055198,mapped to different genes,4,114821908,114822167,260,*,260,26,0.676923077,0.936936937,0.1,4.14E-20,CpGisland,TRUE,U3,Pr-B
20869,cg04504700,0.0000176,0.0000063,2.802272788,0.00539376,gain,ns,0.00000326,0.0000107,0.305040149,0.760540276,pos,ns,-0.002417487,0.003134763,-0.771186497,0.441183797,neg,ns,0.355380446,0.0000667,0.000107804,0.618512317,0.536691868,pos,ns,0.080902251,Pax6,Pax6_fiveUTR,2,105675450,105675499,105675450,105675451,50,+,CGGAGTGATTAGTGGGTTTGAAAAGGGAACCGTGGCTCGGCCTCATTTCC,5' UTR,2,105668900,105697364,28465,1,Pax6-206,6550,Pax6-206;Pax6-207;Pax6-210;Pax6-214;Pax6-208;Pax6-217;Pax6-226;Pax6-220;Pax6-202;Pax6-205;Pax6-225;Pax6-204;Pax6-201;Pax6-203;Pax6-224;Pax6-219,Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,15,78,18508,ENSMUSG00000027168,conserved gene and region,2,105675189,105675515,327,*,327,31,0.620795107,1.001679842,0.094801223,3.92E-23,CpGisland,TRUE,U3,Pr-B
21067,cg08722723,-0.00000284,0.00000172,-1.650025735,0.099950476,loss,ns,-0.000000891,0.00000292,-0.305001174,0.760569932,neg,ns,-0.001401851,0.000855605,-1.638432361,0.102346042,neg,ns,0.989928948,0.0000225,0.0000294,0.763393376,0.445809397,pos,ns,0.943128504,Ddx42,Ddx42_Exon,11,106230315,106230364,106230315,106230316,50,-,CGCTTGTTTTTCCAGGGGTATTCGAGATGACATTGAAGAGGAAGATGACC,"Exon (Ddx42-201/Ddx42, exon 5 of 18)",11,106216926,106249139,32214,1,Ddx42-201,13389,Ddx42-201,Ddx42,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,72047,ENSMUSG00000020705,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21116,cg08483626,0.0000106,0.00000714,1.484253204,0.138757813,gain,ns,0.0000037,0.0000121,0.304924785,0.760628057,pos,ns,-0.011671344,0.003551779,-3.28605561,0.001132532,neg,ns,2.945949505,0.000493666,0.000122145,4.041622683,0.000067,pos,ns,0.131845985,Barhl2,Barhl2_Intergenic_upstream,5,106471046,106471095,106471046,106471047,50,-,CGAATTGTTTTGACACTGCCATTGAATAGCAAAGCCTGGTGGATAATCAT,Distal Intergenic,5,106452523,106458166,5644,2,Barhl2-201,-12929,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,27,104382,ENSMUSG00000034384,conserved gene and region,5,106470982,106471076,95,*,95,10,0.610526316,1.19949495,0.105263158,3.77E-08,CpGisland,TRUE,U13,Hc-P
21340,cg01522553,-0.00000946,0.00000705,-1.341411306,0.180768816,loss,ns,0.00000365,0.000012,0.304871286,0.760668765,pos,ns,-0.000176222,0.003509348,-0.050215025,0.959983377,neg,ns,0.017736287,-0.000173487,0.000120686,-1.437502822,0.151583779,neg,ns,0.639052371,Kcnc4,Kcnc4_threeUTR,3,107439392,107439441,107439392,107439393,50,-,CGAGAGGGCGTCTTGGCAGGTCTCTGTGTTTAAAGAGCACAGGTGTGAGA,3' UTR,3,107438303,107459552,21250,2,Kcnc4-201,20111,Kcnc4-201;Kcnc4-202,Kcnc4;Kcnc4,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,12,99738,ENSMUSG00000027895,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23315,cg16351469,-0.00000143,0.00000259,-0.549768284,0.582874165,loss,ns,-0.00000134,0.0000044,-0.304656161,0.760832466,neg,ns,0.002142818,0.001290259,1.660766248,0.097771434,pos,ns,1.009788016,-0.0000686,0.0000444,-1.546388533,0.123030987,neg,ns,0.956491735,Tnrc6c,Tnrc6c_Exon,11,117749583,117749632,117749583,117749584,50,-,CGCACAATCACTAATCTGCAGCAGCAGATCCAGCAGCACCAGCGCCAGCT,"Exon (Tnrc6c-201/Tnrc6c, exon 15 of 22)",11,117654289,117763437,109149,1,Tnrc6c-201,95294,Tnrc6c-201;Tnrc6c-205;Tnrc6c-202;Tnrc6c-203;Tnrc6c-204;Tnrc6c-206,Tnrc6c;Tnrc6c;Tnrc6c;Tnrc6c;Tnrc6c;Tnrc6c,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,Exon,5,5,217351,ENSMUSG00000025571,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24513,cg03263433,-0.000000739,0.000000511,-1.447578256,0.14874556,loss,ns,-0.000000264,0.000000868,-0.304628052,0.760853856,neg,ns,0.000246145,0.000254222,0.968230961,0.333683816,pos,ns,0.476664857,-0.0000225,0.00000874,-2.577332571,0.010418498,neg,ns,0.012069346,Gabpb1,Gabpb1_fiveUTR,2,126675487,126675536,126675487,126675488,50,+,CGAAAATGCCGCGTCTGGTCGGCGCCCAAAATCCCCACCGAAAAGTCCCC,Promoter (<=1kb),2,126628913,126675502,46590,2,Gabpb1-205,0,Gabpb1-206;Gabpb1-205;Gabpb1-204;Gabpb1-201;Gabpb1-203;Gabpb1-202;Gabpb1-208;Gabpb1-207,Gabpb1;Gabpb1;Gabpb1;Gabpb1;Gabpb1;Gabpb1;Gabpb1;Gabpb1,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,7,12,14391,ENSMUSG00000027361,mapped to different genes,2,126674561,126675949,1389,*,1389,168,0.699064075,0.9905509,0.120950324,2.65E-142,CpGisland,TRUE,U1,Pr-A
10526,cg06787049,-0.0000217,0.00000819,-2.643062258,0.008633487,loss,ns,0.00000424,0.0000139,0.304557325,0.760907679,pos,ns,-0.003019448,0.004077125,-0.740582686,0.459507064,neg,ns,0.337707808,-0.000145224,0.000140212,-1.035747939,0.301127016,neg,ns,0.846289702,Npas3,Npas3_Intron,12,54001230,54001279,54001230,54001231,50,+,CGTGTTAGATGATGAGAAAAATTTCATAGTAATTCATATTTAATCAGAAG,"Intron (Npas3-204/Npas3, intron 5 of 10)",12,53248157,54069532,821376,1,Npas3-204,753073,Npas3-204;Npas3-201;Npas3-203,Npas3;Npas3;Npas3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,83,103,27386,ENSMUSG00000021010,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11724,cg15864920,0.00000114,0.00000381,0.299619735,0.764668019,gain,ns,-0.00000197,0.00000647,-0.304525504,0.760931895,neg,ns,-0.003016819,0.001896312,-1.590887247,0.112654168,neg,ns,0.948252736,-0.0000188,0.0000652,-0.28829176,0.773316073,neg,ns,0.929167278,Fam204a,Fam204a_Intron,19,60242684,60242733,60242684,60242685,50,-,CGTCAGATACATGTATTGCTTGACCTGGGTGAGAAAGTGAAATAAATCCT,"Intron (Gm28351-201/Gm28351-201, intron 1 of 1)",19,60199435,60226701,27267,2,Fam204a-205,-16032,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,14,76539,ENSMUSG00000057858,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3672,cg23202167,0.0000831,0.0000114,7.285436135,2.67E-12,gain,yes,0.0000059,0.0000194,0.304323935,0.761085296,pos,ns,0.017050981,0.005677789,3.003102168,0.002890019,pos,ns,2.539099268,-0.000244416,0.000195259,-1.251754859,0.211602882,neg,ns,0.532233591,Erfl,Erfl_Promoter,7,24953599,24953648,24953599,24953600,50,+,CGGGGACAGCCGGTAAACAGAAATCAATCAGGGGCCTCCCAACCCAGCCC,Promoter (9-10kb),7,24927445,24944494,17050,2,Erfl-201,-9105,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,29,36,,NA,mapped to different genes,7,24953557,24953610,54,*,54,7,0.685185185,1.125,0.12962963,0.00000224,CpGisland,TRUE,U13,Hc-P
240,cg04051089,-0.000000205,0.00000369,-0.055499132,0.955776573,loss,ns,0.00000191,0.00000628,0.304312148,0.761094267,pos,ns,-0.000469271,0.001838618,-0.255230137,0.798714606,neg,ns,0.097608374,0.00000435,0.0000632,0.06883326,0.945166721,pos,ns,0.922943878,Gm21992,Gm21992_Exon,19,4802657,4802706,4802657,4802658,50,-,CGGCCCCCTGGGACATGGACAGGTAGGCTGCAGACGGCTGACCTGCCCCA,"Exon (Rbm14-201/Rbm14, exon 2 of 3)",19,4742913,4811612,68700,2,Gm21992-203,8906,Gm21992-203;Gm21992-206;Gm21992-204;Gm21992-201;Gm21992-205;Gm21992-202;Rbm14-201;Rbm14-202;Rbm14-203,Gm21992;Gm21992;Gm21992;Gm21992;Gm21992;Gm21992;Rbm14;Rbm14;Rbm14,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,27,48,102902673,ENSMUSG00000096370,mapped to different genes,19,4802532,4802658,127,*,127,11,0.637795276,0.976923077,0.086614173,0.00000005,CpGisland,TRUE,U10,Tr-S
22364,cg23664745,-0.00000928,0.00000366,-2.538904063,0.011608744,loss,ns,0.00000189,0.00000621,0.304158687,0.761211062,pos,ns,-0.000385561,0.001819954,-0.211852085,0.832361649,neg,ns,0.079687938,-0.0000622,0.0000626,-0.993625597,0.321180114,neg,ns,0.920258293,Slc39a11,Slc39a11_Exon,11,113624602,113624651,113624602,113624603,50,-,CGGGTGGTCATGACTGTGGATGGCATCAATCAGTTCACCAGCATCTTCTG,"Exon (Sstr2-203/Sstr2, exon 2 of 2)",11,113369728,113650071,280344,2,Slc39a11-205,25420,Slc39a11-205;Slc39a11-207;Slc39a11-206;Slc39a11-204;Sstr2-203;Sstr2-202;Sstr2-201,Slc39a11;Slc39a11;Slc39a11;Slc39a11;Sstr2;Sstr2;Sstr2,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,69806,ENSMUSG00000041654,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22113,cg25658543,0.0000103,0.0000053,1.938710355,0.053444037,gain,ns,0.00000274,0.00000901,0.304149613,0.761217968,pos,ns,0.006481526,0.002638425,2.456589189,0.014574203,pos,ns,1.836415181,-0.000176501,0.0000907,-1.945232501,0.05265084,neg,ns,0.890587621,Eif4g2,Eif4g2_Exon,7,111077241,111077290,111077241,111077242,50,-,CGAATTTGATTGATCGTCTTTGGTCCATTGTCAAGAAAAGCCTTGCGAGG,"Exon (Eif4g2-213/Eif4g2, exon 11 of 22)",7,111067750,111083030,15281,2,Eif4g2-213,5740,Eif4g2-213;Eif4g2-206;Eif4g2-207;Eif4g2-208;Eif4g2-214;Eif4g2-202;Eif4g2-204;Eif4g2-211;Eif4g2-210;Eif4g2-209;Eif4g2-203;Eif4g2-201;Eif4g2-212;Eif4g2-205,Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2,0;0;0;0;-2992;-2542;-1856;-1032;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,20,22,13690,ENSMUSG00000005610,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15247,cg15810888,0.0000014,0.00000316,0.442191853,0.658658717,gain,ns,0.00000163,0.00000537,0.304133241,0.761230429,pos,ns,0.000203772,0.001574498,0.129420207,0.89710909,pos,ns,0.047154743,-0.0000517,0.0000541,-0.955080212,0.340281302,neg,ns,0.874855279,Tmem259,Tmem259_Exon,10,79978428,79978477,79978428,79978429,50,+,CGGGGAAGGCGATGGCCATGTTCATCTCCAGCATCTGCAGCAGGTCCACT,Promoter (<=1kb),10,79974948,79978773,3826,2,Tmem259-205,296,Grin3b-201;Grin3b-203;Grin3b-202;Tmem259-205;Tmem259-204;Tmem259-201;Tmem259-202;Tmem259-203,Grin3b;Grin3b;Grin3b;Tmem259;Tmem259;Tmem259;Tmem259;Tmem259,7713;4691;4019;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,216157,ENSMUSG00000013858,conserved gene and region,10,79978324,79978438,115,*,115,15,0.782608696,1.014109347,0.130434783,1.35E-13,CpGisland,TRUE,U10,Tr-S
7965,cg04268179,0.0000527,0.00000842,6.256214834,1.31E-09,gain,yes,0.00000435,0.0000143,0.304130713,0.761232353,pos,ns,0.008055514,0.004188846,1.923086758,0.055384974,pos,ns,1.256608044,-0.0000455,0.000144054,-0.315969348,0.752238403,neg,ns,0.25320285,Pax2,Pax2_Intergenic_upstream,19,44671105,44671154,44671153,44671154,50,-,AGTCTCCTCACCCCATCAAAAAACTTCTATTAGTAATGGAGACCTCGCCG,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-84940,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,19,44671150,44671210,61,*,61,7,0.62295082,1.196078431,0.114754098,0.00000522,CpGisland,TRUE,U13,Hc-P
27318,cg14204200,9.62E-08,0.00000192,0.050044419,0.96011922,gain,ns,0.000000993,0.00000327,0.303989956,0.761339486,pos,ns,-0.000132822,0.000956879,-0.138807561,0.889692347,neg,ns,0.050760145,0.0000531,0.0000329,1.613874616,0.107572028,pos,ns,0.952196302,Zswim3,Zswim3_Exon,2,164820763,164820812,164820811,164820812,50,+,TACATGGACAGCCTAGACATTGTCACCAGCAAGGTGTCAAGCCTCTTTCG,"Exon (Zswim3-201/Zswim3, exon 2 of 2)",2,164805098,164822130,17033,1,Zswim3-201,15665,Zswim1-201;Zswim1-202;Zswim3-201,Zswim1;Zswim1;Zswim3,-1874;-2201;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,67538,ENSMUSG00000045822,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25598,cg11012495,-0.0000713,0.00000845,-8.437621496,1.25E-15,loss,yes,0.00000436,0.0000144,0.303839575,0.761453948,pos,ns,0.006587558,0.004206725,1.565958786,0.118378455,pos,ns,0.926727332,-0.000486812,0.000144669,-3.365006397,0.00086165,neg,ns,0.820697142,Ebf3,Ebf3_Intron,7,137302974,137303023,137302974,137302975,50,-,CGTTTGGAAATATAGCTAATAAAAAATATAATGAGTGTTCAGCAAAATCG,"Intron (Ebf3-204/Ebf3, intron 6 of 15)",7,137193673,137314445,120773,2,Ebf3-204,11422,Ebf3-204;Ebf3-201;Ebf3-202;Ebf3-203;Ebf3-208;Ebf3-206,Ebf3;Ebf3;Ebf3;Ebf3;Ebf3;Ebf3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,62,84,13593,ENSMUSG00000010476,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
25225,cg17154022,-0.0000129,0.00000464,-2.779642977,0.005774288,loss,ns,0.00000239,0.00000787,0.303814247,0.761473228,pos,ns,-0.00321961,0.002306941,-1.395618558,0.163828211,neg,ns,0.78561131,-0.0000249,0.0000793,-0.314305212,0.753500658,neg,ns,0.064110525,Hmgn2,Hmgn2_fiveUTR,4,133967890,133967939,133967938,133967939,50,+,TCTTCTTCACACTGCTCGGGCTCCGGGGGGTTTATAAAGTTTTTATAGCG,Promoter (<=1kb),4,133964991,133967908,2918,2,Hmgn2-212,0,Dhdds-209;Dhdds-201;Dhdds-207;Dhdds-208;Dhdds-210;Dhdds-204;Dhdds-206;Dhdds-203;Dhdds-202;Dhdds-205;Hmgn2-203;Hmgn2-204;Hmgn2-212;Hmgn2-201;Hmgn2-202;Hmgn2-211;Hmgn2-210;Hmgn2-206;Hmgn2-205;Hmgn2-207;Hmgn2-208;Hmgn2-213;Hmgn2-209,Dhdds;Dhdds;Dhdds;Dhdds;Dhdds;Dhdds;Dhdds;Dhdds;Dhdds;Dhdds;Hmgn2;Hmgn2;Hmgn2;Hmgn2;Hmgn2;Hmgn2;Hmgn2;Hmgn2;Hmgn2;Hmgn2;Hmgn2;Hmgn2;Hmgn2,0;0;0;0;0;0;26260;32454;32454;32979;0;-449;0;0;0;0;-615;-639;-647;0;0;0;-29,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,4,15331,ENSMUSG00000003038,mapped to different genes,4,133967280,133968016,737,*,737,106,0.736770692,1.062855433,0.143826323,2.03E-99,CpGisland,TRUE,U1,Pr-A
4792,cg05174060,-0.0000262,0.00000372,-7.045641088,1.20E-11,loss,yes,-0.00000192,0.00000631,-0.303768711,0.761507889,neg,ns,0.001718375,0.001849518,0.929093314,0.353563605,pos,ns,0.451532447,-0.000158138,0.0000636,-2.486263166,0.013435577,neg,ns,0.883922904,Kmt2b,Kmt2b_Exon,7,30583407,30583456,30583455,30583456,50,+,GGCCTCAGGAGATTCATCGGAATCCCAGGGCAACAGCGTCTTCACTATCG,"Exon (Kmt2b-201/Kmt2b, exon 8 of 37)",7,30568858,30588717,19860,2,Kmt2b-201,5261,Kmt2b-201;Kmt2b-202;Kmt2b-206;Kmt2b-204;Kmt2b-203,Kmt2b;Kmt2b;Kmt2b;Kmt2b;Kmt2b,0;0;0;-4413;1618,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,7,75410,ENSMUSG00000006307,conserved gene and region,7,30583201,30583460,260,*,260,19,0.673076923,0.645414163,0.073076923,3.18E-12,CpGisland,TRUE,U10,Tr-S
10463,cg21046297,-0.0000298,0.00000728,-4.091831419,0.0000546,loss,ns,0.00000376,0.0000124,0.303686388,0.761570553,pos,ns,-0.007634182,0.003625122,-2.105910474,0.036015987,neg,ns,1.443504684,0.00000509,0.000124668,0.040825913,0.967460962,pos,ns,0.807840978,Npas3,Npas3_Intron,12,53664695,53664744,53664695,53664696,50,+,CGCCTGCTGTCTTGACCTGTACTTTGTTCCCTCAGTGATGCTGAAGAGAT,"Intron (Npas3-204/Npas3, intron 3 of 10)",12,53248157,54069532,821376,1,Npas3-204,416538,Npas3-204;Npas3-201;Npas3-203,Npas3;Npas3;Npas3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,83,103,27386,ENSMUSG00000021010,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1579,cg20412711,-0.0000194,0.00000556,-3.496162562,0.000540909,loss,ns,-0.00000286,0.00000944,-0.303475933,0.761730757,neg,ns,-0.000136004,0.002765224,-0.049183596,0.960804657,neg,ns,0.017364901,-0.000129088,0.0000951,-1.357454244,0.175624304,neg,ns,0.906409588,Zfp521,Zfp521_Intron,18,13790474,13790523,13790522,13790523,50,+,GTAAAGTCAAGCTGCTTGGAGCCTGCTGAGTGTCTGCTGTGGGGATAGCG,"Intron (Zfp521-201/Zfp521, intron 5 of 7)",18,13687013,13972787,285775,2,Zfp521-201,182264,Zfp521-201;Zfp521-205;Zfp521-204,Zfp521;Zfp521;Zfp521,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,81,225207,ENSMUSG00000024420,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10173,cg04265576,0.0000446,0.00000456,9.779192685,7.34E-20,gain,yes,-0.00000235,0.00000775,-0.303421289,0.761772356,neg,ns,0.00799159,0.002270132,3.520319379,0.000495684,pos,ns,3.304795359,-0.000119096,0.0000781,-1.525509,0.128151742,neg,ns,0.098066894,Gm28308,Gm28308_fiveUTR,6,52208628,52208677,52208628,52208629,50,+,CGCGCCCCTCTGCAGGACTGTGATTTGTTGTGTATTAGTACATCTGGCTA,5' UTR,6,52163359,52213339,49981,2,Gm28308-201,4662,Gm28308-201;Hoxa3-201;Hoxa3-203;Hoxa5-201;Hoxa6-201,Gm28308;Hoxa3;Hoxa3;Hoxa5;Hoxa6,0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,21,103,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
20794,cg12138490,0.000015,0.00000947,1.584448912,0.114111164,gain,ns,-0.00000488,0.0000161,-0.303364318,0.761815726,neg,ns,0.0057277,0.004712525,1.215420552,0.225130553,pos,ns,0.647565562,-0.00050038,0.000162063,-3.08756016,0.002200496,neg,ns,0.820449546,Them7,Them7_Intron,2,105333998,105334047,105334046,105334047,50,-,TTTCTATATTTCAAAGCTTTGTGGTAAATAATCAATTCAAACCAGCACCG,"Intron (Them7-201/Them7, intron 3 of 3)",2,105224320,105379796,155477,1,Them7-201,109678,Them7-201;Them7-202,Them7;Them7,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,7,74088,ENSMUSG00000055312,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3675,cg12150435,-0.0000153,0.00000798,-1.920099179,0.055762769,loss,ns,0.00000411,0.0000136,0.303362295,0.761817266,pos,ns,-0.00998889,0.003973957,-2.513587736,0.012457694,neg,ns,1.904562344,0.000204449,0.000136664,1.495999976,0.135671005,pos,ns,0.632868082,Atp1a3,Atp1a3_Exon,7,24978959,24979008,24978959,24978960,50,-,CGAAGATGAGGAAACTGTAGGGGAAGGCACAGAACCACCAGCTGGGCCTG,"Exon (Atp1a3-202/Atp1a3, exon 22 of 22)",7,24978167,25005895,27729,2,Atp1a3-202,26887,Atp1a3-202;Atp1a3-201;Atp1a3-205,Atp1a3;Atp1a3;Atp1a3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,232975,ENSMUSG00000040907,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10362,cg05010284,-0.0000325,0.0000062,-5.244636584,0.000000291,loss,yes,0.00000319,0.0000105,0.30331651,0.761852122,pos,ns,0.001579522,0.003083692,0.512217871,0.608863263,pos,ns,0.215480229,-0.000169215,0.000106048,-1.595648441,0.111586217,neg,ns,0.838642258,Add3,Add3_Exon,19,53226597,53226646,53226597,53226598,50,+,CGGGAAGACTTGGAATGCCTTATTCAAGAACAGATGAAGAAAGGCCACAA,"Exon (Add3-203/Add3, exon 3 of 14)",19,53140443,53247399,106957,1,Add3-203,86154,Add3-203;Add3-208;Add3-205;Add3-212;Add3-216;Add3-211;Add3-202;Add3-215;Add3-213;Add3-214;Add3-201;Add3-206;Add3-207;Add3-209,Add3;Add3;Add3;Add3;Add3;Add3;Add3;Add3;Add3;Add3;Add3;Add3;Add3;Add3,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,27360,ENSMUSG00000025026,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10005,cg20996402,-0.0000107,0.00000337,-3.166374203,0.001697071,loss,ns,-0.00000174,0.00000573,-0.303304716,0.7618611,neg,ns,-0.005064293,0.00167856,-3.017045545,0.002763993,neg,ns,2.558463058,0.0000368,0.0000577,0.638353963,0.523714585,pos,ns,0.938545497,Arhgap20,Arhgap20_Exon,9,51825871,51825920,51825871,51825872,50,+,CGAAGAGCATTCCCCTCAAAATCTTCGCCAAGGACATTGGGAATTGTGCC,"Exon (Arhgap20-201/Arhgap20, exon 6 of 15)",9,51765352,51853856,88505,1,Arhgap20-201,60519,Arhgap20-205;Arhgap20-201;Arhgap20-204;Arhgap20-203,Arhgap20;Arhgap20;Arhgap20;Arhgap20,60526;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,244867,ENSMUSG00000053199,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14655,cg17794466,-0.00000409,0.0000011,-3.713482971,0.000242359,loss,ns,-0.000000567,0.00000187,-0.303123244,0.761999258,neg,ns,-0.000281321,0.000548175,-0.513196509,0.608179397,neg,ns,0.215968296,-0.00000699,0.0000189,-0.370886738,0.710975211,neg,ns,0.972348538,Rbfox2,Rbfox2_Intron,15,77104723,77104772,77104723,77104724,50,-,CGCCAGCATTGTGTATAGTTACCATGGAAAGAGTGAGTCAAGTGAAGGGC,"Intron (Rbfox2-204/Rbfox2, intron 6 of 13)",15,77078990,77306928,227939,2,Rbfox2-204,202156,Rbfox2-204;Rbfox2-203;Rbfox2-202;Rbfox2-206;Rbfox2-208;Rbfox2-209;Rbfox2-201;Rbfox2-207;Rbfox2-212;Rbfox2-213,Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,20,93686,ENSMUSG00000033565,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11734,cg09564835,-0.0000674,0.0000122,-5.538858283,0.000000065,loss,yes,0.00000627,0.0000207,0.303047541,0.762056894,pos,ns,-0.016526856,0.006058508,-2.727875567,0.006737795,neg,ns,2.171482209,0.000277037,0.000208352,1.329660763,0.184607637,pos,ns,0.822777352,Mtmr6,Mtmr6_Exon,14,60290709,60290758,60290709,60290710,50,+,CGCATGCAGAGCTGGTGGGCTACACAAAAGGACATTGGCAGAATTATAGT,"Exon (Mtmr6-203/Mtmr6, exon 7 of 15)",14,60265228,60302370,37143,1,Mtmr6-201,25481,Mtmr6-201;Mtmr6-203,Mtmr6;Mtmr6,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,219135,ENSMUSG00000021987,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27167,cg18631984,-0.00000543,0.00000677,-0.80218861,0.423058382,loss,ns,-0.00000349,0.0000115,-0.302953431,0.762128545,neg,ns,-0.002819314,0.003371853,-0.836131963,0.403724688,neg,ns,0.393914692,-0.000164796,0.000115958,-1.421172757,0.156271682,neg,ns,0.670724413,Tnr,Tnr_Exon,1,159861195,159861244,159861243,159861244,50,-,ATTGCTGTGTTCCAGATCTCTCCACTCCTCAAGGGCTACAATTTAAGACG,"Exon (Tnr-202/Tnr, exon 6 of 23)",1,159523769,159931729,407961,1,Tnr-202,337426,Tnr-202;Tnr-201;Tnr-203,Tnr;Tnr;Tnr,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,13,21960,ENSMUSG00000015829,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2653,cg23359712,-0.0000021,0.00000358,-0.587103644,0.557561437,loss,ns,0.00000184,0.00000608,0.302873797,0.762189178,pos,ns,-0.005469165,0.001780826,-3.071138642,0.002321357,neg,ns,2.634258014,0.000288714,0.0000612,4.714282898,0.00000367,pos,ns,0.959542183,Arhgap21,Arhgap21_Intergenic_upstream,2,21010527,21010576,21010575,21010576,50,-,CATGAATTAAATATCACCCCACTGGGCTCTCTGATTGGTGAATGATGACG,Distal Intergenic,2,20847919,20968881,120963,2,Arhgap21-201,-41695,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,4,71435,ENSMUSG00000036591,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18482,cg25389666,-0.00000216,0.00000144,-1.506221415,0.133028619,loss,ns,0.000000739,0.00000244,0.302808772,0.762238688,pos,ns,0.000161065,0.00071533,0.22516227,0.822001394,pos,ns,0.085127446,-0.00000661,0.0000246,-0.268543731,0.788459438,neg,ns,0.957430681,Sv2c,Sv2c_Exon,13,95989116,95989165,95989116,95989117,50,-,CGGGCTCTCATGTTGGTGTCATGAATTAACTTCAGAATCATCCAAGCTTC,"Exon (Sv2c-201/Sv2c, exon 6 of 13)",13,95954594,96132577,177984,2,Sv2c-201,143412,Sv2c-201;Sv2c-202;Sv2c-203;Sv2c-204,Sv2c;Sv2c;Sv2c;Sv2c,0;-4266;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,75209,ENSMUSG00000051111,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12410,cg01935380,0.0000757,0.0000197,3.835063084,0.00015207,gain,ns,-0.0000101,0.0000335,-0.302655305,0.762355541,neg,ns,0.06820439,0.009820665,6.944986695,2.23E-11,pos,yes,10.65178302,-0.002634717,0.000337732,-7.801209636,9.45E-14,neg,yes,0.728468501,Fign,Fign_Promoter,2,64099267,64099316,64099315,64099316,50,+,TCCAACTGAGATAATAAAGCAAACAATAACATTTGATCATGATGTCTACG,Promoter (1-2kb),2,63977337,64098038,120702,2,Fign-201,-1229,Fign-203;Fign-201;Fign-202;Fign-204,Fign;Fign;Fign;Fign,0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,12,84,60344,ENSMUSG00000075324,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
867,cg15925685,-0.0000075,0.0000107,-0.703180914,0.482470767,loss,ns,-0.00000548,0.0000181,-0.30257422,0.762417284,neg,ns,-0.008992651,0.005310189,-1.693470913,0.09137038,neg,ns,1.039194569,0.000289613,0.000182617,1.585905876,0.113780155,pos,ns,0.72595344,Nxph1,Nxph1_Exon,6,9247501,9247550,9247549,9247550,50,-,AACTGGTCAAGGGAATGTATCTGTCAGCTTGGTACCCCCTACAAAAATCG,"Exon (Nxph1-202/Nxph1, exon 3 of 3)",6,8948614,9249032,300419,1,Nxph1-202,298887,Nxph1-202;Nxph1-201,Nxph1;Nxph1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,12,18231,ENSMUSG00000046178,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6092,cg06882168,0.0000985,0.0000116,8.491604107,8.60E-16,gain,yes,-0.00000596,0.0000197,-0.302490031,0.762481392,neg,ns,0.01196866,0.005770887,2.073972378,0.038907158,pos,ns,1.409970491,-0.000146726,0.00019846,-0.739322373,0.460270716,neg,ns,0.49901874,Nrg2,Nrg2_Intergenic_downstream,18,36017056,36017105,36017056,36017057,50,+,CGTGACCATGCATCCAATCTAAAGAATCTGAAATGCAAAGGACATGCAGG,Downstream (<1kb),18,36021070,36031941,10872,2,Nrg2-202,14836,Nrg2-203;Nrg2-206;Nrg2-202;Psd2-201;Psd2-205;Psd2-206;Psd2-204;Psd2-203,Nrg2;Nrg2;Nrg2;Psd2;Psd2;Psd2;Psd2;Psd2,0;0;0;0;0;0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,1,20,100042150,ENSMUSG00000060275,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
14298,cg13589080,-0.00000701,0.0000101,-0.6938974,0.488266184,loss,ns,-0.00000519,0.0000172,-0.302468423,0.762497845,neg,ns,0.011948525,0.005025683,2.377492599,0.0180371,pos,ns,1.74383329,-0.000539538,0.000172833,-3.12173347,0.001967345,neg,ns,0.699768999,Rps6-ps4,Rps6-ps4_Intergenic_downstream,2,75098852,75098901,75098900,75098901,50,-,TCCACACCCAGTCTGAATATCTTTTGTAAATTTATACTTGACAACCCTCG,Distal Intergenic,2,75191073,75191822,750,2,Rps6-ps4-201,92970,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,4,105244208,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1337,cg05046398,0.0000503,0.0000176,2.850865823,0.004652436,gain,ns,-0.00000906,0.00003,-0.302467666,0.762498422,neg,ns,0.004028183,0.008774811,0.459062107,0.64651128,pos,ns,0.189423893,-0.0000116,0.000301765,-0.038463743,0.969342697,neg,ns,0.70160299,Cadps,Cadps_Exon,14,12378751,12378800,12378799,12378800,50,-,CTTCTAGGCAGAGGTGGCATTTTGCTTTGGCTGTGACAACAGGCAAACCG,"Exon (Gm48239-201/Gm48239-201, exon 3 of 4)",14,12372563,12823053,450491,2,Cadps-210,444253,Cadps-210;Cadps-202;Cadps-203;Cadps-204;Cadps-201;Cadps-212;Cadps-205;Cadps-207;Cadps-208,Cadps;Cadps;Cadps;Cadps;Cadps;Cadps;Cadps;Cadps;Cadps,0;0;0;0;0;0;-1808;-1472;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,34,27062,ENSMUSG00000054423,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7899,cg26675789,-0.0000492,0.00000869,-5.661993955,3.41E-08,loss,yes,-0.00000446,0.0000148,-0.302389399,0.762558022,neg,ns,-0.009842321,0.004322856,-2.276809796,0.023478857,neg,ns,1.629323053,0.0000516,0.000148663,0.347158349,0.72870792,pos,ns,0.798151976,Pax5,Pax5_Intron,4,44623346,44623395,44623394,44623395,50,-,ATCTTGCATAAACAAGGCCTTGGGACCATAAATAATAATAAATCATGACG,"Intron (Pax5-201/Pax5, intron 6 of 9)",4,44524757,44710487,185731,2,Pax5-201,87092,Pax5-201;Pax5-202;Pax5-203;Pax5-204;Pax5-205;Pax5-207;Pax5-206;Pax5-209;Pax5-210;Pax5-212;Pax5-213;Pax5-214;Pax5-215;Pax5-220;Pax5-211,Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,19,45,18507,ENSMUSG00000014030,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9960,cg26035859,-0.0000249,0.00000704,-3.541171252,0.00045952,loss,ns,-0.00000361,0.000012,-0.302120992,0.762762424,neg,ns,-0.007664265,0.003503761,-2.187439408,0.029457144,neg,ns,1.53080936,0.00025758,0.000120494,2.137699651,0.033323071,pos,ns,0.759335959,Satb1,Satb1_Intron,17,51760596,51760645,51760596,51760597,50,+,CGTGCCTGCGTGTGTAAATAAAATTAATTACAAGCGAGAGGGTGAAGGCT,"Intron (Satb1-208/Satb1, intron 9 of 10)",17,51736187,51832672,96486,2,Satb1-208,72027,Satb1-208;Satb1-213;Satb1-204;Satb1-214;Satb1-203;Satb1-211;Satb1-207,Satb1;Satb1;Satb1;Satb1;Satb1;Satb1;Satb1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,28,36,20230,ENSMUSG00000023927,conserved gene and region,17,51760544,51760676,133,*,133,9,0.541353384,0.93515625,0.067669173,0.00000959,CpGisland,TRUE,U15,NS
12959,cg26107479,-0.00000127,0.0000016,-0.796925263,0.426104361,loss,ns,-0.000000819,0.00000271,-0.302056329,0.762811669,neg,ns,0.000690227,0.000794539,0.868713882,0.385675695,pos,ns,0.413777729,-0.0000209,0.0000273,-0.764147718,0.445360449,neg,ns,0.964026434,Brinp1,Brinp1_Exon,4,68762637,68762686,68762637,68762638,50,-,CGCATCTGGCAGATGCGCATGGACATGCCGATCACCATGTGGATGAAGTC,"Exon (Brinp1-201/Brinp1, exon 8 of 8)",4,68761514,68954397,192884,2,Brinp1-201,191711,Brinp1-201,Brinp1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,7,56710,ENSMUSG00000028351,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7645,cg16192475,-0.0000299,0.000007,-4.267603389,0.0000263,loss,ns,0.00000359,0.0000119,0.301934685,0.762904313,pos,ns,-0.007252481,0.003486167,-2.080359436,0.038313626,neg,ns,1.416646746,0.0000412,0.000119889,0.343715265,0.731293436,pos,ns,0.840581821,Tln1,Tln1_Exon,4,43549151,43549200,43549151,43549152,50,+,CGTTCCCAGCTGCTTGCAGCAGGTTCTGACGGGGCTGTGGAGAGTGAACA,"Exon (Tln1-201/Tln1, exon 17 of 57)",4,43531519,43562422,30904,2,Tln1-201,13222,Tln1-201;Tln1-208;Tln1-203;Tln1-205,Tln1;Tln1;Tln1;Tln1,0;0;0;5251,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,21894,ENSMUSG00000028465,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17464,cg09985350,-0.00000883,0.0000053,-1.66578651,0.096766084,loss,ns,-0.00000272,0.00000901,-0.301782605,0.763020141,neg,ns,-0.002457545,0.002639625,-0.93102044,0.352567459,neg,ns,0.452757775,-0.000223988,0.0000908,-2.467462985,0.014147401,neg,ns,0.823739741,Nrxn3,Nrxn3_threeUTR,12,90332239,90332288,90332287,90332288,50,+,CGCCATGTACAAGTACAGGAACAGGGACGAGGGGTCCTATCAAGTGGACG,3' UTR,12,88722986,90332878,1609893,1,Nrxn3-213,1609253,Nrxn3-213;Nrxn3-208;Nrxn3-205;Nrxn3-201;Nrxn3-210;Nrxn3-214;Nrxn3-203;Nrxn3-202,Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,14,39,18191,ENSMUSG00000066392,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1535,cg27586571,0.00000574,0.0000101,0.570189541,0.56896216,gain,ns,-0.00000516,0.0000171,-0.301766999,0.763032028,neg,ns,-0.001991947,0.005008065,-0.39774777,0.691089873,neg,ns,0.160465471,-0.0000852,0.000172227,-0.494585559,0.621243015,neg,ns,0.754513311,Gm11826,Gm11826_Intergenic_downstream,4,13472300,13472349,13472348,13472349,50,+,CTAAAGATAGGTTAATTCTATGCCTGATTCATTCCATGGACCATTTAACG,Distal Intergenic,4,13482755,13483192,438,2,Gm11826-201,10843,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,6,100039988,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
531,cg27136252,0.0000875,0.00000721,12.12976304,5.68E-28,gain,yes,0.0000037,0.0000123,0.301700984,0.763082308,pos,ns,0.011717321,0.003590733,3.263211098,0.001224561,pos,ns,2.912019671,-0.000100291,0.000123485,-0.81217471,0.417314612,neg,ns,0.154713003,Dlx6,Dlx6_Intron,6,6849976,6850025,6849976,6849977,50,+,CGTCCTGGCAACAGCGCAATTTTCTATCATCAAGGATAAATGGCATCGAA,"Intron (Dlx6os1-202/Dlx6os1-202, intron 1 of 1)",6,6863334,6867970,4637,1,Dlx6-203,-13309,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,36,13396,ENSMUSG00000029754,mapped to different genes,6,6849927,6850023,97,*,97,10,0.567010309,1.286472149,0.103092784,4.63E-08,CpGisland,TRUE,U13,Hc-P
4576,cg10404717,0.0000171,0.00000519,3.297724855,0.001088042,gain,ns,0.00000266,0.00000882,0.301661084,0.763112699,pos,ns,-0.000731022,0.002585082,-0.282784717,0.777530597,neg,ns,0.109282512,0.000192847,0.0000889,2.169244275,0.030823846,pos,ns,0.918038954,Urm1,Urm1_Exon,2,29845648,29845697,29845696,29845697,50,+,GATGTCCAGCCACAATTCTCGGTTGGCCGCAGACTCGTACAAGAATTGCG,"Exon (Mir219b-201/Mir219b-201, exon 1 of 1)",2,29841648,29844064,2417,1,Urm1-202,4000,Urm1-205;Urm1-206;Urm1-201;Urm1-204;Urm1-202,Urm1;Urm1;Urm1;Urm1;Urm1,25573;18306;18306;18287;4000,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,10,68205,ENSMUSG00000069020,mapped to different genes,2,29845571,29845950,380,*,380,29,0.62631579,0.7861882,0.07631579,6.66E-19,CpGisland,TRUE,U13,Hc-P
16237,cg06805124,0.0000834,0.0000161,5.185676533,0.000000389,gain,yes,-0.00000824,0.0000273,-0.301494297,0.76323974,neg,ns,0.032290074,0.008003247,4.034621641,0.0000689,pos,ns,4.161529217,-0.000997695,0.000275231,-3.624936131,0.000337726,neg,ns,0.321375095,Bnc2,Bnc2_Intron,4,84637743,84637792,84637743,84637744,50,-,CGCCATAACAACCGCTGAAATGATCTTGTGGAATGTGTCTAGTGGCACTG,"Intron (Bnc2-201/Bnc2, intron 1 of 7)",4,84275095,84675034,399940,2,Bnc2-201,37242,Bnc2-201;Bnc2-202;Bnc2-214;Bnc2-215;Bnc2-206;Bnc2-211;Bnc2-217;Bnc2-207;Bnc2-203;Bnc2-209;Bnc2-204;Bnc2-210,Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,91,242509,ENSMUSG00000028487,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
19009,cg00220465,0.0000398,0.00000543,7.33241885,1.98E-12,gain,yes,-0.00000278,0.00000923,-0.301455522,0.763269275,neg,ns,0.008962492,0.002704022,3.314503771,0.001026911,pos,ns,2.988467047,-0.000194722,0.000093,-2.093984964,0.037073251,neg,ns,0.115099779,Prdm8,Prdm8_Promoter,5,98166319,98166368,98166319,98166320,50,+,CGTGCTAATGAATGCCATCTACACCTACCAGATGTGCCACTGGGTGACAT,Promoter (<=1kb),5,98167198,98187454,20257,1,Prdm8-202,-830,Prdm8-202,Prdm8,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,10,77630,ENSMUSG00000035456,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
26602,cg08035723,-0.00000328,0.00000192,-1.703407349,0.089494067,loss,ns,-0.000000985,0.00000327,-0.301411215,0.763303024,neg,ns,0.001608864,0.000957021,1.681117012,0.093747361,pos,ns,1.028040949,-0.0000633,0.0000329,-1.922015816,0.055520153,neg,ns,0.947924961,Pex14,Pex14_Intron,4,148981632,148981681,148981632,148981633,50,-,CGCAGACAATGCCTCAGTGATAAGCATGCAGATTGTGCACCTAGTTCAGA,"Intron (Gm17029-202/Gm17029-202, intron 2 of 2)",4,148960535,149099876,139342,2,Pex14-201,118195,Pex14-201;Pex14-202;Pex14-205;Pex14-203,Pex14;Pex14;Pex14;Pex14,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,41,48,56273,ENSMUSG00000028975,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2714,cg02318358,-0.00000405,0.0000017,-2.380989788,0.017869897,loss,ns,0.000000871,0.00000289,0.301392832,0.763317028,pos,ns,-0.000748964,0.000846775,-0.884489752,0.377117378,neg,ns,0.423523455,-0.00000456,0.0000291,-0.156577025,0.875680131,neg,ns,0.963161128,Cdh12,Cdh12_Exon,15,21558374,21558423,21558374,21558375,50,-,CGCAGTATAATTTCTCCATAATTGCGAGTAAAGTTAGTAAGTATGGCATG,"Exon (Cdh12-203/Cdh12, exon 9 of 13)",15,21110125,21589533,479409,1,Cdh12-203,448249,Cdh12-203;Cdh12-201,Cdh12;Cdh12,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,215654,ENSMUSG00000040452,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5487,cg19662683,-0.00000338,0.00000308,-1.097153997,0.273425586,loss,ns,-0.00000158,0.00000524,-0.301287337,0.763397388,neg,ns,0.000251928,0.001534867,0.164136733,0.869730469,pos,ns,0.060615315,-0.0000832,0.0000528,-1.57669412,0.115885821,neg,ns,0.933682884,Dst,Dst_Exon,1,34086247,34086296,34086247,34086248,50,-,CGGGACAAAGTTCAGAAGAAAACATTTACAAAATGGATAAATCAGCATCT,"Exon (Dst-211/Dst, exon 5 of 103)",1,33908225,34307592,399368,1,Dst-211,178022,Dst-211;Dst-218;Dst-209;Dst-205;Dst-214;Dst-202;Dst-203;Dst-201;Dst-221;Dst-207,Dst;Dst;Dst;Dst;Dst;Dst;Dst;Dst;Dst;Dst,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,4,13518,ENSMUSG00000026131,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13584,cg02497242,-0.000014,0.00000567,-2.469040954,0.014086395,loss,ns,-0.0000029,0.00000963,-0.30100314,0.763613887,neg,ns,-0.006385304,0.002820095,-2.264215771,0.024251443,neg,ns,1.615262408,0.0000929,0.000097,0.957560037,0.339030836,pos,ns,0.881558687,Hat1,Hat1_Exon,2,71421260,71421309,71421308,71421309,50,-,TACATGACAGTCTATAATTACTATGTGTACCCAGACAAAACCCGGCCACG,"Exon (Hat1-202/Hat1, exon 7 of 11)",2,71388958,71441622,52665,1,Hat1-202,32302,Hat1-202;Hat1-201;Hat1-204,Hat1;Hat1;Hat1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,11,12,107435,ENSMUSG00000027018,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23756,cg01246498,0.0000102,0.00000157,6.501233045,3.18E-10,gain,yes,-0.000000802,0.00000267,-0.300904089,0.763689348,neg,ns,0.002386987,0.000781259,3.055308317,0.002443623,pos,ns,2.611965859,-0.000049,0.0000269,-1.822600543,0.06932712,neg,ns,0.034814062,Rbm19,Rbm19_Intergenic_downstream,5,120281517,120281566,120281565,120281566,50,+,TTATAATGATTATTTGATTATCTTGGGCTTTAACAAACCCAGCCAGTTCG,Distal Intergenic,5,120175725,120197969,22245,1,Rbm19-210,105792,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,12,13,74111,ENSMUSG00000029594,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
20430,cg24769699,0.0000781,0.00000723,10.81040059,2.51E-23,gain,yes,-0.00000369,0.0000123,-0.300842203,0.763736496,neg,ns,0.006819044,0.003596788,1.895870686,0.058906968,pos,ns,1.229833329,-0.0000719,0.000123693,-0.581294567,0.561464347,neg,ns,0.21900037,Hoxc4,Hoxc4_Intron,15,103035316,103035365,103035364,103035365,50,+,GTAATTACATCCCCCATAAATTTTATGGCTTAGCTACTCTGGGCAGTCCG,"Intron (Hoxc4-202/Hoxc4, intron 3 of 3)",15,103018934,103036405,17472,1,Hoxc4-202,16382,Hoxc4-202;Hoxc4-201,Hoxc4;Hoxc4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,91,15423,ENSMUSG00000075394,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
6561,cg25693194,-0.00000322,0.00000238,-1.353583281,0.176855452,loss,ns,0.00000121,0.00000404,0.300720858,0.763828946,pos,ns,0.002175679,0.001183426,1.838458533,0.066951412,pos,ns,1.174240262,-0.0000747,0.0000407,-1.836072122,0.067304559,neg,ns,0.93505442,Zfp536,Zfp536_Intron,7,37731294,37731343,37731294,37731295,50,-,CGGTGTCACCTCTGTTTGCTAATTGTCTCCTTGAGCTACATTTTACTTCT,"Intron (Zfp536-202/Zfp536, intron 2 of 6)",7,37479104,37769624,290521,2,Zfp536-202,38281,Zfp536-202;Zfp536-201;Zfp536-203;Zfp536-206;Zfp536-209;Zfp536-208;Zfp536-205;Zfp536-207,Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,73,112,243937,ENSMUSG00000043456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9251,cg22760129,0.00000148,0.0000075,0.197428451,0.843621654,gain,ns,-0.00000383,0.0000127,-0.300607834,0.763915059,neg,ns,0.006762209,0.003734269,1.810852005,0.071131694,pos,ns,1.147936849,-0.000338782,0.000128421,-2.638054666,0.008759118,neg,ns,0.843700264,Cadm1,Cadm1_Intron,9,47850177,47850226,47850177,47850178,50,+,CGGCTGATGATGGCCATAAAGCAAGTTGCCATCTCTGTACCACTTTACAC,"Intron (Cadm1-204/Cadm1, intron 9 of 9)",9,47530173,47853385,323213,1,Cadm1-204,320004,Cadm1-204;Cadm1-209;Cadm1-206;Cadm1-202;Cadm1-203;Cadm1-201,Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,77,54725,ENSMUSG00000032076,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27208,cg13940339,-0.00000271,0.000000992,-2.730745549,0.006680794,loss,ns,-0.000000506,0.00000168,-0.300499642,0.763997493,neg,ns,0.000413474,0.000493628,0.837622434,0.402888098,pos,ns,0.394815562,-0.00000602,0.000017,-0.354699199,0.723056125,neg,ns,0.026653735,Top1,Top1_fiveUTR,2,160645987,160646036,160645987,160645988,50,+,CGAACTTAGGCTGTTACACAACTGCTGGGGTCTGTTCTCGCCGCCCGCCC,Promoter (<=1kb),2,160645888,160722764,76877,1,Top1-201,99,Top1-201;Top1-203,Top1;Top1,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,8,21969,ENSMUSG00000070544,conserved gene and region,2,160645642,160646951,1310,*,1310,142,0.690076336,0.915385183,0.108396947,9.19E-113,CpGisland,TRUE,U2,Pr-W
508,cg12001273,0.000000776,0.00000275,0.281534548,0.778488269,gain,ns,0.00000141,0.00000468,0.300489303,0.764005371,pos,ns,0.003412417,0.001370998,2.489002682,0.013334551,pos,ns,1.875021597,-0.000145822,0.0000471,-3.092814612,0.002163064,neg,ns,0.950382977,Tox,Tox_threeUTR,4,6687447,6687496,6687495,6687496,50,+,CTAACAAATTTACTTACAAACACCTATATTTATTATTTCATAAATAGGCG,3' UTR,4,6686353,6990799,304447,2,Tox-201,303303,Tox-201;Tox-202,Tox;Tox,0;1855,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,15,252838,ENSMUSG00000041272,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12855,cg24357055,0.00000884,0.00000428,2.064127528,0.039837379,gain,ns,-0.00000219,0.00000728,-0.300421189,0.764057271,neg,ns,-0.004157553,0.002132313,-1.949785309,0.052103027,neg,ns,1.283137049,0.000135803,0.0000733,1.851937383,0.064985446,pos,ns,0.884445305,Ebf2,Ebf2_Intron,14,67347658,67347707,67347706,67347707,50,-,AGAATTTTCCAATTAGCGGCAAACCTGTTCCACCTTCTCCTGTAATTACG,"Intron (Ebf2-201/Ebf2, intron 7 of 16)",14,67233292,67429777,196486,1,Ebf2-201,114366,Ebf2-201;Ebf2-203;Ebf2-202,Ebf2;Ebf2;Ebf2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,21,13592,ENSMUSG00000022053,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8521,cg13410749,0.0000305,0.0000052,5.873150267,0.000000011,gain,yes,0.00000265,0.00000883,0.300342716,0.764117065,pos,ns,0.004170709,0.002586399,1.612554657,0.107858826,pos,ns,0.96714431,-0.000122194,0.0000889,-1.373797856,0.170497018,neg,ns,0.078451686,Lbx1,Lbx1_Intergenic_upstream,19,45293651,45293700,45293699,45293700,50,+,GAGTTTCTGCAATGGTAATTAGGAGGGCCCTCATTACCCTGGCGGAGCCG,Distal Intergenic,19,45232684,45235812,3129,2,Lbx1-201,-57839,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,15,50,16814,ENSMUSG00000025216,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
7242,cg25179399,-0.00000121,0.00000129,-0.943587976,0.34611504,loss,ns,-0.000000656,0.00000218,-0.300273859,0.764169533,neg,ns,-0.001273459,0.000639605,-1.991008172,0.047357524,neg,ns,1.324611013,0.0000166,0.000022,0.753343484,0.451815287,pos,ns,0.969372529,Lsamp,Lsamp_Intron,16,41729469,41729518,41729469,41729470,50,-,CGCTTGGCATAATTTTCTCAGACAAACTAGGACTAGGGCTGTGAATACTG,"Intron (Lsamp-206/Lsamp, intron 3 of 8)",16,39984371,42176295,2191925,1,Lsamp-206,1745098,Lsamp-206;Lsamp-201;Lsamp-202,Lsamp;Lsamp;Lsamp,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,23,268890,ENSMUSG00000061080,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4891,cg17911339,0.00000291,0.00000258,1.128674594,0.259907823,gain,ns,-0.00000132,0.00000439,-0.30004163,0.764346496,neg,ns,-0.00192861,0.001284913,-1.500964786,0.134382488,neg,ns,0.871657324,0.0000181,0.0000442,0.410211054,0.681934486,pos,ns,0.952716287,Zfp513,Zfp513_Exon,5,31199565,31199614,31199613,31199614,50,-,CGTTTGAGGTTCATGCTCTGGTTGCAGCTGTAGTTGCAAAGGCTACACCG,"Exon (Zfp513-202/Zfp513, exon 4 of 4)",5,31198981,31202303,3323,2,Zfp513-202,2689,Ppm1g-205;Ppm1g-201;Ppm1g-206;Snx17-201;Snx17-205;Snx17-202;Snx17-204;Snx17-210;Snx17-208;Snx17-207;Snx17-211;Snx17-209;Snx17-206;Snx17-203;Zfp513-202;Zfp513-201;Zfp513-205;Zfp513-207;Zfp513-203;Zfp513-204;Zfp513-208;Zfp513-206,Ppm1g;Ppm1g;Ppm1g;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Zfp513;Zfp513;Zfp513;Zfp513;Zfp513;Zfp513;Zfp513;Zfp513,0;0;5469;0;0;0;0;0;0;0;4722;0;0;0;0;0;0;672;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,15,15,101023,ENSMUSG00000043059,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22926,cg02243284,-0.00000272,0.00000291,-0.934800656,0.350618627,loss,ns,0.00000148,0.00000494,0.300028736,0.764356321,pos,ns,0.000793054,0.001447824,0.547755924,0.584253675,pos,ns,0.233398547,-0.000108379,0.0000498,-2.176691395,0.03025799,neg,ns,0.94396417,Exoc7,Exoc7_Exon,11,116293277,116293326,116293277,116293278,50,+,CGGGGGTCTAAAGGAATATTGTATGTGTCCCCAAGAACTACGGAGTGAAA,"Exon (Exoc7-201/Exoc7, exon 13 of 20)",11,116288001,116306734,18734,2,Exoc7-201,13408,Exoc7-201;Exoc7-202;Exoc7-203;Exoc7-208;Exoc7-209;Exoc7-210;Exoc7-207;Exoc7-205,Exoc7;Exoc7;Exoc7;Exoc7;Exoc7;Exoc7;Exoc7;Exoc7,0;0;0;0;-2797;-1807;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,53413,ENSMUSG00000020792,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13857,cg03059018,0.0000103,0.00000232,4.423766182,0.0000134,gain,ns,0.00000118,0.00000395,0.299906819,0.76444923,pos,ns,0.002894106,0.00115714,2.50108417,0.012897023,pos,ns,1.88951053,-0.000077,0.0000398,-1.935727934,0.053810074,neg,ns,0.051588531,Six4,Six4_fiveUTR,12,73113355,73113404,73113355,73113356,50,+,CGCAGTCACCATTAAGATAGCTGTTAGAGCAAAGTAGTGTAAACGGATAG,Promoter (<=1kb),12,73099609,73113425,13817,2,Six4-201,21,Six4-201;Six4-202,Six4;Six4,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,8,20474,ENSMUSG00000034460,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
2369,cg25593948,0.0000637,0.00000842,7.566147636,4.42E-13,gain,yes,-0.00000429,0.0000143,-0.299760072,0.764561065,neg,ns,0.00043856,0.004189032,0.104692375,0.916687616,pos,ns,0.037778636,0.000242682,0.00014406,1.684583618,0.093075384,pos,ns,0.168742515,Tfap2b,Tfap2b_Exon,1,19209185,19209234,19209233,19209234,50,-,AGACCAGGCTGCCATCATGCTCTGGAAGCTTGTGGAGAATGTCAAGTACG,Promoter (<=1kb),1,19208914,19238576,29663,1,Tfap2b-201,271,Tfap2b-201;Tfap2b-204;Tfap2b-202;Tfap2b-205;Tfap2b-203,Tfap2b;Tfap2b;Tfap2b;Tfap2b;Tfap2b,0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,40,21419,ENSMUSG00000025927,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
20260,cg25441541,0.0000957,0.00000891,10.73855849,4.43E-23,gain,yes,0.00000454,0.0000151,0.29968342,0.764619482,pos,ns,0.01339369,0.004436441,3.019016714,0.002746589,pos,ns,2.561206251,-0.000308678,0.000152569,-2.023205017,0.043909915,neg,ns,0.151045751,Hoxc5,Hoxc5_Exon,15,102973402,102973451,102973402,102973403,50,-,CGGCAACAAGAAACTGCCTGAGTTACATCAGTCGGTTTTCGTCGAGGGCC,"Exon (Mir196a-2-201/Mir196a-2-201, exon 1 of 1)",15,102967443,103015676,48234,1,Hoxc5-202,5959,Hoxc10-201;Hoxc5-202;Hoxc9-202;Hoxc9-201,Hoxc10;Hoxc5;Hoxc9;Hoxc9,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,72,134,15424,ENSMUSG00000022485,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
11183,cg13169256,-0.0000052,0.0000011,-4.717326247,0.00000362,loss,ns,-0.000000561,0.00000187,-0.299534398,0.764733059,neg,ns,0.000283707,0.000548898,0.51686698,0.605617567,pos,ns,0.217801536,-0.0000357,0.0000189,-1.891377974,0.059505961,neg,ns,0.037143115,Zmym2,Zmym2_Intron,14,56888070,56888119,56888118,56888119,50,+,TGCAATACCAACCTCAGCAACCAGACGACGGGCTTCTGCAGCTGCTCACG,"Intron (Zmym2-202/Zmym2, intron 2 of 2)",14,56886653,56903867,17215,1,Zmym2-202,1417,Zmym2-202;Zmym2-201,Zmym2;Zmym2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,2,76007,ENSMUSG00000021945,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
25838,cg16767361,0.00000956,0.00000716,1.335808121,0.182591843,gain,ns,0.00000364,0.0000122,0.299523178,0.76474161,pos,ns,0.006469754,0.003563464,1.815580234,0.070400839,pos,ns,1.152422165,-0.00026791,0.000122547,-2.186175447,0.029550363,neg,ns,0.141216479,Uncx,Uncx_Intergenic_downstream,5,139600161,139600210,139600209,139600210,50,+,TGGCACTTTCATTGTCTGTCCTTCGGTACCGCTGTAAAATCAATTAGCCG,Distal Intergenic,5,139543898,139545268,1371,1,Uncx-202,56263,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,59,88,22255,ENSMUSG00000029546,conserved gene and region,5,139600164,139600348,185,*,185,12,0.583783784,0.767900381,0.064864865,0.000000254,CpGisland,TRUE,U13,Hc-P
23326,cg19674753,-0.00000275,0.00000141,-1.94884368,0.052215933,loss,ns,0.000000718,0.0000024,0.299436729,0.7648075,pos,ns,0.001132961,0.000702949,1.611726828,0.108039005,pos,ns,0.966419423,-0.000035,0.0000242,-1.447294664,0.148824885,neg,ns,0.038589697,Slc6a9,Slc6a9_fiveUTR,4,117835387,117835436,117835435,117835436,50,+,TCGGGAGGCTGATGCAACTTTCCCTTTAAGAAAGCCACCTGGGCGCACCG,Promoter (<=1kb),4,117835397,117868337,32941,1,Slc6a9-210,0,Slc6a9-202;Slc6a9-208;Slc6a9-201;Slc6a9-207;Slc6a9-210;Slc6a9-206,Slc6a9;Slc6a9;Slc6a9;Slc6a9;Slc6a9;Slc6a9,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,8,14664,ENSMUSG00000028542,conserved gene and region,4,117835430,117835463,34,*,34,6,0.823529412,1.046153846,0.176470588,0.00000267,CpGisland,TRUE,U1,Pr-A
17338,cg11758048,0.0000245,0.00000483,5.081117808,0.00000065,gain,yes,-0.00000245,0.0000082,-0.299350361,0.764873329,neg,ns,0.002931804,0.002401522,1.220810935,0.223085347,pos,ns,0.651528955,-0.000025,0.0000826,-0.302122529,0.762761253,neg,ns,0.036911489,Dok6,Dok6_Exon,18,89769087,89769136,89769087,89769088,50,-,CGGATTTTCACGTAGCCCTGCTTGACTATGTCGTTAAAGTTGGAGGCCAT,Promoter (<=1kb),18,89292424,89769528,477105,2,Dok6-201,392,Dok6-201,Dok6,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,623279,ENSMUSG00000073514,conserved gene and region,18,89768848,89769598,751,*,751,77,0.691078562,0.870757416,0.10252996,2.02E-59,CpGisland,TRUE,U3,Pr-B
3819,cg18052025,-0.00000466,0.00000837,-0.556276021,0.578423479,loss,ns,0.00000426,0.0000142,0.299350012,0.764873595,pos,ns,0.002110704,0.004167052,0.506522181,0.612850179,pos,ns,0.212645683,0.0000827,0.000143305,0.577005795,0.564354313,pos,ns,0.819707185,Zmiz1,Zmiz1_Intron,14,25521896,25521945,25521944,25521945,50,+,TATGTAAATTCTGTTTAACTTCAATCAAGTTTCTAATTATGTTTTTACCG,"Intron (Zmiz1-206/Zmiz1, intron 2 of 2)",14,25459185,25538492,79308,1,Zmiz1-206,62711,Zmiz1-206;Zmiz1-208;Zmiz1-201;Zmiz1-202;Zmiz1-205,Zmiz1;Zmiz1;Zmiz1;Zmiz1;Zmiz1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,15,328365,ENSMUSG00000007817,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
9360,cg02334175,-0.0000282,0.0000111,-2.538624669,0.011617824,loss,ns,-0.00000565,0.0000189,-0.299278578,0.764928043,neg,ns,-0.004013384,0.005528493,-0.725945366,0.468419974,neg,ns,0.329364594,-0.000122421,0.000190124,-0.643901,0.520115727,neg,ns,0.788797975,Gm7977,Gm7977_Intergenic_upstream,3,48408625,48408674,48408625,48408626,50,-,CGTTTATTACAAAACAACACAGGAGGCTTAGAATAGATGATACAGTTGGT,Distal Intergenic,3,48026013,48026760,748,2,Gm7977-201,-381914,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,666202,ENSMUSG00000103257,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24327,cg18295388,0.0000287,0.00000799,3.593985068,0.000378682,gain,ns,-0.00000406,0.0000136,-0.299213094,0.764977956,neg,ns,-0.009553606,0.003975043,-2.403397192,0.016830606,neg,ns,1.773900242,0.000160943,0.000136701,1.177331575,0.239966299,pos,ns,0.147805741,Pou3f1,Pou3f1_threeUTR,4,124659759,124659808,124659759,124659760,50,-,CGCGTCTGTGTATAAAAGCAGGAAATAGCCAAAGCTTTAATCTAGCCTAA,3' UTR,4,124656807,124660655,3849,1,Pou3f1-201,2952,Pou3f1-201,Pou3f1,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,85,18991,ENSMUSG00000090125,conserved gene and region,4,124659224,124659760,537,*,537,47,0.648044693,0.8390625,0.087523278,4.32E-33,CpGisland,TRUE,U3,Pr-B
5611,cg25430089,-0.00000148,0.00000279,-0.530965998,0.595822535,loss,ns,-0.00000142,0.00000474,-0.298987715,0.765149754,neg,ns,-0.000537827,0.001387852,-0.387524479,0.6986339,neg,ns,0.155750345,0.0000987,0.0000477,2.067341789,0.039531607,pos,ns,0.94081913,Pbx3,Pbx3_Intron,2,34355917,34355966,34355965,34355966,50,-,CGTATTAATTTCTGTCATCCCAAACATCATCGAGTATTGTTACAGCACCG,"Intron (Pbx3-202/Pbx3, intron 2 of 7)",2,34171457,34372038,200582,2,Pbx3-202,16072,Pbx3-202;Pbx3-201;Pbx3-206;Pbx3-207;Pbx3-209;Pbx3-204;Pbx3-205;Pbx3-203,Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,82,18516,ENSMUSG00000038718,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3208,cg18628791,-0.00000391,0.00000171,-2.278984957,0.023347617,loss,ns,-0.000000871,0.00000291,-0.298893009,0.765221948,neg,ns,-0.000421092,0.000853458,-0.493395195,0.622082726,neg,ns,0.206151858,-0.0000609,0.0000294,-2.076539325,0.038667682,neg,ns,0.017962715,Xpo1,Xpo1_Promoter,11,23255924,23255973,23255924,23255925,50,+,CGGAGGCCCAGGTTCCAAACGCTCCGCGGCGCCATGGGCTGAAAACTCAA,Promoter (<=1kb),11,23256041,23297597,41557,1,Xpo1-201,-68,Xpo1-201;Xpo1-204;Xpo1-203;Xpo1-206;Xpo1-202;Xpo1-205,Xpo1;Xpo1;Xpo1;Xpo1;Xpo1;Xpo1,0;0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,7,14,103573,ENSMUSG00000020290,conserved gene and region,11,23255743,23256076,334,*,334,31,0.676646707,0.821746032,0.092814371,7.76E-23,CpGisland,TRUE,U2,Pr-W
9915,cg20054305,0.0000187,0.00000336,5.57790029,5.31E-08,gain,yes,0.00000171,0.00000571,0.298864012,0.765244053,pos,ns,0.002772243,0.001671978,1.658061424,0.098316564,pos,ns,1.007373308,0.000114516,0.0000575,1.991610681,0.047290966,pos,ns,0.07061941,Shc3,Shc3_Promoter,13,51569524,51569573,51569524,51569525,50,+,CGATGACTCATTCAACAAAGGCTTGCTCAATAGTGGAAGATTCCATTTCA,Promoter (<=1kb),13,51431041,51569487,138447,2,Shc3-204,-37,Shc3-201;Shc3-203;Shc3-204;Shc3-202,Shc3;Shc3;Shc3;Shc3,-2440;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,4,20418,NA,mapped to different genes,13,51569385,51569583,199,*,199,11,0.552763819,0.743546196,0.055276382,0.00000442,CpGisland,TRUE,NA,NRS
6697,cg24918943,0.0000378,0.0000118,3.216028144,0.001437005,gain,ns,0.00000597,0.00002,0.298768163,0.765317121,pos,ns,0.008841463,0.005853764,1.510389441,0.131962686,pos,ns,0.879548854,-0.000162476,0.00020131,-0.807092891,0.420231763,neg,ns,0.889152142,Arap3,Arap3_Intergenic_upstream,18,38085192,38085241,38085240,38085241,50,+,GCTTTGTGAGCCTCAATTTAGCGGCCGTGCCTGGATGTCAAACTCAAGCG,Distal Intergenic,18,37996312,37998969,2658,2,Arap3-203,-86223,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,10,106952,ENSMUSG00000024451,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5959,cg12249363,-0.00000997,0.00000906,-1.100229705,0.272085673,loss,ns,-0.0000046,0.0000154,-0.298720881,0.765353166,neg,ns,0.000189538,0.004509666,0.042029213,0.966502467,pos,ns,0.014797033,-0.0000109,0.000155087,-0.070474674,0.943861299,neg,ns,0.915451772,Matr3,Matr3_Exon,18,35572522,35572571,35572522,35572523,50,-,CGGGAGCCACCATACAGAGTACCTAGGGATGATTGGGAAGAAAAAAGGCA,"Exon (Matr3-205/Matr3, exon 2 of 3)",18,35562138,35577876,15739,1,Matr3-205,10384,Matr3-205;Matr3-211;Matr3-201;Matr3-218;Matr3-210;Matr3-207;Matr3-209;Matr3-213;Matr3-214;Matr3-215;Matr3-202;Matr3-217;Matr3-208;Matr3-206;Matr3-204;Matr3-212;Snhg4-201;Snhg4-203;Snhg4-207;Snhg4-208;Snhg4-205;Snhg4-206;Snhg4-204,Matr3;Matr3;Matr3;Matr3;Matr3;Matr3;Matr3;Matr3;Matr3;Matr3;Matr3;Matr3;Matr3;Matr3;Matr3;Matr3;Snhg4;Snhg4;Snhg4;Snhg4;Snhg4;Snhg4;Snhg4,0;10376;0;10330;0;0;0;0;0;0;0;0;0;9839;0;0;19118;0;0;19110;19109;0;19084,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,Exon,4,5,17184,ENSMUSG00000037236,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
18522,cg08261402,0.0000189,0.00000247,7.65450501,2.48E-13,gain,yes,-0.00000125,0.00000419,-0.298580358,0.765460296,neg,ns,-0.000471653,0.001228704,-0.383861897,0.701343953,neg,ns,0.154068943,0.0000969,0.0000423,2.292959345,0.022519626,pos,ns,0.07028048,Hoxb9,Hoxb9_fiveUTR,11,96271534,96271583,96271582,96271583,50,+,GTCTGAGAATGTCCATTTCTGGGACGCTTAGCAGCTATTATGTCGACTCG,Promoter (<=1kb),11,96271457,96276595,5139,1,Hoxb9-201,77,Hoxb9-201;Hoxb9-202,Hoxb9;Hoxb9,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,22,15417,ENSMUSG00000020875,mapped to different genes,11,96271433,96272051,619,*,619,70,0.675282714,0.992327951,0.113085622,2.33E-57,CpGisland,TRUE,NA,NRS
20134,cg04909017,0.0000682,0.0000116,5.895574938,9.75E-09,gain,yes,0.00000586,0.0000197,0.298415162,0.765586241,pos,ns,0.011819934,0.005757216,2.053064254,0.040905291,pos,ns,1.388220518,-0.000385585,0.00019799,-1.947493454,0.052378191,neg,ns,0.464880815,Calcoco1,Calcoco1_Intergenic_downstream,15,102694603,102694652,102694651,102694652,50,-,AGCAAGGAGTCATTAGCATTTTCATGATGGTGTATTTCTGCTTGTCTCCG,Distal Intergenic,15,102706972,102709902,2931,2,Calcoco1-203,15299,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,29,67488,ENSMUSG00000023055,conserved gene and region,15,102694651,102694811,161,*,161,11,0.639751553,0.678544061,0.068322981,0.000000568,CpGisland,TRUE,U13,Hc-P
10670,cg09200986,0.0000297,0.0000122,2.443251775,0.015113252,gain,ns,0.00000616,0.0000207,0.298289625,0.765681954,pos,ns,0.067839795,0.006050648,11.21198891,1.02E-24,pos,yes,23.99189598,-0.001586015,0.000208081,-7.622091955,3.07E-13,neg,yes,0.68731283,Zfp608,Zfp608_Intron,18,54927926,54927975,54927974,54927975,50,+,CCCAACTATTTCAGGTCTGCTCTCCCATCTGCTTGGCCTGTTAACTGTCG,"Intron (Zfp608-201/Zfp608, intron 3 of 9)",18,54888048,54990166,102119,2,Zfp608-201,62191,Zfp608-201;Zfp608-204;Zfp608-203,Zfp608;Zfp608;Zfp608,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,32,269023,ENSMUSG00000052713,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21911,cg21153886,-0.00000388,0.00000129,-2.994937753,0.002966238,loss,ns,0.000000656,0.0000022,0.298259244,0.765705119,pos,ns,-0.000697733,0.000644155,-1.083175155,0.279572451,neg,ns,0.553505626,-0.0000158,0.0000222,-0.711414511,0.477362378,neg,ns,0.972306092,Rtl1,Rtl1_Exon,12,109710175,109710224,109710223,109710224,50,+,TGGTACTTGGAGAGATAGTAGACCGTATAGCGTACGCTTTATCTGTGACG,"Exon (Mir411-201/Mir411-201, exon 1 of 1)",12,109589193,109600330,11138,2,Rtl1-201,-109845,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,9,353326,ENSMUSG00000085925,mapped to different genes,12,109710141,109710303,163,*,163,11,0.539877301,0.926614987,0.067484663,0.000000642,CpGisland,TRUE,U11,Tr-P
12474,cg26302306,-0.0000292,0.00000714,-4.092121877,0.0000546,loss,ns,0.00000362,0.0000121,0.298234255,0.765724171,pos,ns,-0.00801958,0.00355274,-2.257294105,0.024685414,neg,ns,1.607559584,0.000229877,0.000122178,1.881486714,0.060842627,pos,ns,0.890741089,Gm13577,Gm13577_Intergenic_downstream,2,64451806,64451855,64451854,64451855,50,-,ATCTGGCCAGTGCAGCTCGGACAGAAATGATGTATACAGCTTCATCAGCG,Distal Intergenic,2,64474745,64474949,205,2,Gm13577-201,23143,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,17,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
858,cg27476408,0.00000804,0.00000293,2.740997047,0.006480727,gain,ns,-0.00000149,0.00000499,-0.298216055,0.765738048,neg,ns,0.003466251,0.001460666,2.373061877,0.018250912,pos,ns,1.738715428,0.0000106,0.0000502,0.210603064,0.833335383,pos,ns,0.947084804,Dmtf1,Dmtf1_Exon,5,9132514,9132563,9132562,9132563,50,+,AAGGCCGGTTCAGACCCCATGCTATAGTCCTGTAGAAATCTTTTCTTTCG,"Exon (Dmtf1-201/Dmtf1, exon 8 of 18)",5,9118801,9161776,42976,2,Dmtf1-201,29213,Dmtf1-201;Dmtf1-209;Dmtf1-202;Dmtf1-208;Dmtf1-214;Dmtf1-212;Dmtf1-213;Dmtf1-204;Dmtf1-207;Dmtf1-215;Dmtf1-216;Dmtf1-211;Dmtf1-205;Tmem243-202,Dmtf1;Dmtf1;Dmtf1;Dmtf1;Dmtf1;Dmtf1;Dmtf1;Dmtf1;Dmtf1;Dmtf1;Dmtf1;Dmtf1;Dmtf1;Tmem243,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,11,23857,ENSMUSG00000042508,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3554,cg25468783,0.00000145,0.00000169,0.857564393,0.391795539,gain,ns,-0.000000858,0.00000288,-0.298148152,0.765789823,neg,ns,0.000140782,0.000842817,0.167038081,0.867448991,pos,ns,0.061756054,0.00000504,0.000029,0.173978778,0.861995697,pos,ns,0.961381894,Agap3,Agap3_Intron,5,24495207,24495256,24495255,24495256,50,-,CGGGCGATGTTAACATCTCATTATCTTTGTTACTGTAATTACATTATCCG,"Intron (Agap3-201/Agap3, intron 11 of 17)",5,24452177,24502047,49871,1,Agap3-201,43030,Agap3-201;Agap3-202,Agap3;Agap3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,13,213990,ENSMUSG00000023353,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11365,cg07414895,-0.00000281,0.00000106,-2.654525492,0.008351968,loss,ns,0.000000537,0.0000018,0.298082664,0.765839756,pos,ns,0.000982796,0.000527772,1.862159492,0.063526608,pos,ns,1.197044332,-0.0000237,0.0000182,-1.307462136,0.192024662,neg,ns,0.027719808,Sap30l,Sap30l_Exon,11,57802241,57802290,57802289,57802290,50,-,CCAGAAGAGCATCTCGCAGAAGAAACTCAAGCTGGACATCGACAAGAGCG,Promoter (<=1kb),11,57801637,57810217,8581,1,Sap30l-201,604,Sap30l-201,Sap30l,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,50724,ENSMUSG00000020519,conserved gene and region,11,57801486,57802434,949,*,949,128,0.761854584,0.939095477,0.13487882,1.18E-115,CpGisland,TRUE,NA,NRS
14205,cg01121770,-0.00000489,0.00000242,-2.019382748,0.04430773,loss,ns,-0.00000123,0.00000412,-0.29804987,0.765864761,neg,ns,-0.000627719,0.00120576,-0.520599932,0.60301712,neg,ns,0.219670358,-0.0000356,0.0000415,-0.859018361,0.39099413,neg,ns,0.017915885,Mnt,Mnt_fiveUTR,11,74830878,74830927,74830926,74830927,50,+,GGGGCTCCGGTCCGGGCTTTGGCTGTGGCCCCGGTGTAGTAGCGGGGGCG,Promoter (<=1kb),11,74830920,74845725,14806,1,Mnt-201,0,Mettl16-205;Mnt-201,Mettl16;Mnt,60048;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,17,17428,ENSMUSG00000000282,conserved gene but different region,11,74830803,74831045,243,*,243,33,0.761316872,0.951923077,0.135802469,2.89E-30,CpGisland,TRUE,U1,Pr-A
1649,cg26913290,-0.000000475,0.00000325,-0.146175626,0.883877754,loss,ns,-0.00000164,0.00000552,-0.29802798,0.765881452,neg,ns,0.001149676,0.001616104,0.711387179,0.477379286,pos,ns,0.321136429,-0.0000973,0.0000556,-1.750092667,0.081091681,neg,ns,0.937123109,Gm5523,Gm5523_Intergenic_upstream,1,13993026,13993075,13993026,13993027,50,-,CGTGAATAATTCATCTAGAAATTCTATCGTGAAGTTGTATCAGTTTCCAC,Distal Intergenic,1,13785883,13786879,997,2,Gm5523-201,-206196,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,433273,ENSMUSG00000097711,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15973,cg07027749,-0.00000795,0.00000979,-0.811407228,0.417754404,loss,ns,0.00000496,0.0000166,0.298009967,0.765895188,pos,ns,-0.001336653,0.004874415,-0.274218065,0.784099683,neg,ns,0.105628722,0.0000778,0.000167631,0.463954342,0.643006076,pos,ns,0.678909575,Dmd,Dmd_Intron,X,84078297,84078346,84078345,84078346,50,+,ATCCTTCCTGGCTAGAGAAAGCTTCAAGTTCTTCTCCAGTGGCCCATTCG,"Intron (Dmd-203/Dmd, intron 44 of 78)",20,82948903,85206141,2257239,1,Dmd-203,1129394,Dmd-203;Dmd-215;Dmd-208,Dmd;Dmd;Dmd,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,28,13405,ENSMUSG00000045103,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11338,cg20967318,-0.0000287,0.00000773,-3.713652108,0.000242204,loss,ns,0.00000391,0.0000131,0.297975391,0.765921553,pos,ns,-0.005979358,0.003846137,-1.554639859,0.121052154,neg,ns,0.917027479,0.0000146,0.000132268,0.110736809,0.911896714,pos,ns,0.848550158,Gm8107,Gm8107_Intergenic_downstream,X,57709649,57709698,57709697,57709698,50,+,GGCAGTGCATAGCTCCACAGGAAATTATGATAGCAAAAGTCTTCCTGTCG,Distal Intergenic,20,57736547,57738555,2009,2,Gm8107-201,28857,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,4,666441,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4463,cg23345561,0.00000969,0.00000188,5.167478027,0.000000426,gain,yes,0.00000095,0.00000319,0.297922445,0.765961925,pos,ns,-0.000148186,0.000933735,-0.158702285,0.874006775,neg,ns,0.058485201,-0.0000829,0.0000321,-2.581167616,0.01030592,neg,ns,0.049407608,Sox4,Sox4_Promoter,13,28953831,28953880,28953831,28953832,50,+,CGCGTGCAATGAGAAGCTCCAAATCTGACCTCATTCCAATTTACAGAGCA,Promoter (<=1kb),13,28948919,28953713,4795,2,Sox4-201,-118,Sox4-201,Sox4,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,12,20677,ENSMUSG00000076431,conserved gene and region,13,28953710,28953834,125,*,125,10,0.56,1.214771623,0.08,0.000000531,CpGisland,TRUE,U2,Pr-W
11110,cg14717190,-0.0000413,0.00000843,-4.896596292,0.00000157,loss,yes,-0.00000427,0.0000143,-0.297807955,0.766049228,neg,ns,-0.008616044,0.004196075,-2.053357969,0.040876627,neg,ns,1.388524948,-0.0000052,0.000144303,-0.036011584,0.9712963,neg,ns,0.831927518,Lingo1,Lingo1_Intron,9,56630183,56630232,56630183,56630184,50,+,CGGCAATCAATTTGGGTGTCACATGAAATAGGCATAATTATTCCGCCAGC,"Intron (Lingo1-201/Lingo1, intron 3 of 3)",9,56618475,56685253,66779,2,Lingo1-201,55021,Lingo1-201;Lingo1-206;Lingo1-203;Lingo1-202,Lingo1;Lingo1;Lingo1;Lingo1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,25,235402,ENSMUSG00000049556,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24460,cg17032516,0.00000224,0.00000144,1.553700654,0.121276124,gain,ns,-0.000000728,0.00000245,-0.297659843,0.766162175,neg,ns,0.000551605,0.000716611,0.769741043,0.442039652,pos,ns,0.354538772,-0.0000355,0.0000246,-1.438587983,0.151276115,neg,ns,0.966636697,Ago1,Ago1_threeUTR,4,126439445,126439494,126439493,126439494,50,+,ACAGCTCCTGGGGCTTGGAAAGCTTTCTTCTATCCAGTGAGGTAACAGCG,3' UTR,4,126435012,126468421,33410,2,Ago1-207,28927,Ago1-207;Ago1-201;Ago1-206;Ago1-202;Ago1-205;Ago1-204,Ago1;Ago1;Ago1;Ago1;Ago1;Ago1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,11,13,236511,ENSMUSG00000041530,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9740,cg04302527,-0.00000346,0.00000124,-2.782060482,0.005732507,loss,ns,-0.000000629,0.00000211,-0.297572065,0.766229114,neg,ns,-0.001100303,0.000618857,-1.777960324,0.076390539,neg,ns,1.116960423,0.0000178,0.0000213,0.836253285,0.403656552,pos,ns,0.034194246,Bbx,Bbx_Intron,16,50430701,50430750,50430749,50430750,50,+,CTTTTTGCATCGTTTCGTTTTACCTTCCTCATTTAGCAGAAATGATCGCG,"Intron (Bbx-208/Bbx, intron 1 of 16)",16,50191844,50432390,240547,2,Bbx-208,1640,Bbx-208;Bbx-201;Bbx-203;Bbx-202;Bbx-204;Bbx-207;Bbx-209;Bbx-206,Bbx;Bbx;Bbx;Bbx;Bbx;Bbx;Bbx;Bbx,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,10,70508,ENSMUSG00000022641,conserved gene but different region,16,50430682,50430847,166,*,166,11,0.421686747,1.490612245,0.06626506,0.000000769,CpGisland,TRUE,NA,NRS
27095,cg07379873,-0.00000477,0.00000157,-3.029798442,0.002653164,loss,ns,0.000000795,0.00000267,0.297426957,0.766339777,pos,ns,0.001378595,0.000783074,1.760491136,0.079310626,pos,ns,1.100668622,-0.0000226,0.0000269,-0.840320876,0.401376141,neg,ns,0.950971119,Srsf11,Srsf11_threeUTR,3,158023301,158023350,158023349,158023350,50,+,GGTGTGCTCTCAACTTTCAAAAGCTGTTTTATGAACAACGACTCGTGTCG,3' UTR,3,158010473,158036639,26167,2,Srsf11-204,13289,Srsf11-204;Srsf11-213;Srsf11-202;Srsf11-207;Srsf11-201;Srsf11-217;Srsf11-218;Srsf11-206;Srsf11-209;Srsf11-210;Srsf11-212;Srsf11-203;Srsf11-208;Srsf11-215,Srsf11;Srsf11;Srsf11;Srsf11;Srsf11;Srsf11;Srsf11;Srsf11;Srsf11;Srsf11;Srsf11;Srsf11;Srsf11;Srsf11,0;0;0;-161;0;-1297;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,8,69207,ENSMUSG00000055436,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12069,cg03538828,0.0000512,0.0000077,6.651324724,1.31E-10,gain,yes,-0.00000389,0.0000131,-0.297309708,0.766429198,neg,ns,0.004208333,0.003830593,1.098611353,0.272790134,pos,ns,0.564171341,-0.0000421,0.000131734,-0.319529422,0.749540307,neg,ns,0.693049708,Efna5,Efna5_Intron,17,62721346,62721395,62721394,62721395,50,-,GCAGCTTGCTAAATTTACCCAAAACAAATAGAATTACAGGCTTTTGCCCG,"Intron (Efna5-201/Efna5, intron 1 of 4)",17,62604184,62881317,277134,2,Efna5-201,159922,Efna5-201;Efna5-202,Efna5;Efna5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,21,13640,ENSMUSG00000048915,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1046,cg20832532,9.18E-08,0.00000525,0.017489604,0.986057277,gain,ns,-0.00000265,0.00000892,-0.29723357,0.766487267,neg,ns,-0.003980028,0.002612321,-1.523559798,0.128638164,neg,ns,0.890630168,0.000171957,0.0000898,1.914091131,0.05652905,pos,ns,0.842123181,Gm14481,Gm14481_Intergenic_upstream,X,11189667,11189716,11189667,11189668,50,-,CGTCGTTGGGGTGCCTGCGTCTCAAATCACTGGCTCTGTGCAGCCTTGAT,Distal Intergenic,20,11220607,11221235,629,1,Gm14481-201,-30940,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,5,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24952,cg16961769,-0.0000227,0.00000691,-3.280042533,0.001156112,loss,ns,0.00000349,0.0000117,0.29720595,0.766508333,pos,ns,-0.005486397,0.003439618,-1.595060085,0.111717751,neg,ns,0.951877816,0.000135732,0.000118288,1.147468431,0.252072856,pos,ns,0.901472448,Fgfr2,Fgfr2_threeUTR,7,130196202,130196251,130196250,130196251,50,+,GGTCAGCTTGTGCACAGCCGGCTGGCTGCTGAAGTCTGGCTTCTTGGTCG,3' UTR,7,130162451,130266263,103813,2,Fgfr2-211,70012,Fgfr2-211;Fgfr2-217;Fgfr2-207;Fgfr2-226;Fgfr2-215;Fgfr2-201;Fgfr2-202;Fgfr2-203;Fgfr2-204;Fgfr2-205;Fgfr2-206;Fgfr2-208;Fgfr2-209;Fgfr2-210;Fgfr2-212;Fgfr2-213;Fgfr2-214;Fgfr2-216;Fgfr2-222;Fgfr2-225;Fgfr2-218,Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,9,79,14183,ENSMUSG00000030849,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1239,cg14455689,0.0000725,0.000022,3.297415986,0.001089198,gain,ns,-0.0000111,0.0000374,-0.297173194,0.766533315,neg,ns,0.021295647,0.0109498,1.944843384,0.052697884,pos,ns,1.27820682,-0.000379714,0.000376563,-1.008369832,0.314063367,neg,ns,0.463369872,Ptprg,Ptprg_Intron,14,12102679,12102728,12102727,12102728,50,-,TGATGAACAATTAATTATTAAAATATAATATTGTCTGCATACAGCACCCG,"Intron (Ptprg-201/Ptprg, intron 6 of 29)",14,11553532,12242041,688510,1,Ptprg-201,549147,Ptprg-201;Ptprg-204;Ptprg-206,Ptprg;Ptprg;Ptprg,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,23,19270,ENSMUSG00000021745,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
6171,cg08738875,-0.00000958,0.00000363,-2.639444703,0.008724081,loss,ns,0.00000183,0.00000617,0.297068256,0.766613353,pos,ns,0.002410109,0.001806489,1.334139692,0.183137313,pos,ns,0.737223163,-0.000172943,0.0000621,-2.783791786,0.005702754,neg,ns,0.925537187,Gm9211,Gm9211_Intergenic_upstream,7,36207947,36207996,36207995,36207996,50,-,TGATGCTAATTAGACATAAGGCAAATATGTGCCATGACAAATTAGCAGCG,Distal Intergenic,7,36234292,36235266,975,1,Gm9211-201,-26345,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,15,668507,NA,mapped to different genes,7,36207995,36208105,111,*,111,9,0.666666667,0.749437359,0.081081081,0.00000221,CpGisland,TRUE,U15,NS
27410,cg26991850,0.0000758,0.0000138,5.511890267,7.48E-08,gain,yes,-0.00000694,0.0000234,-0.297057825,0.766621309,neg,ns,0.010955825,0.006844985,1.600562316,0.110492452,pos,ns,0.956667387,-0.000378962,0.000235398,-1.609873195,0.108443322,neg,ns,0.021820405,Fam78b,Fam78b_Exon,1,167001660,167001709,167001660,167001661,50,+,CGCGCATCGAGGAGACCTCGCCCATCGTCCTGCGCTACAAGACCCCCTAC,Promoter (<=1kb),1,167001417,167091302,89886,1,Fam78b-205,243,Fam78b-205;Fam78b-206;Fam78b-204;Fam78b-202;Fam78b-201;Fam78b-203,Fam78b;Fam78b;Fam78b;Fam78b;Fam78b;Fam78b,0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,9,226610,ENSMUSG00000060568,conserved gene and region,1,167000772,167001755,984,*,984,138,0.762195122,0.968669748,0.140243902,1.97E-127,CpGisland,TRUE,U3,Pr-B
9174,cg01161204,0.00005,0.0000185,2.710482822,0.00709273,gain,ns,0.00000932,0.0000314,0.296995604,0.766668766,pos,ns,0.023829608,0.009189784,2.593054112,0.00996387,pos,ns,2.001571935,-0.000666631,0.000316036,-2.109352593,0.035715669,neg,ns,0.483883679,Cadm1,Cadm1_Intron,9,47367809,47367858,47367809,47367810,50,+,CGAAAGCCAAAAGCGCAGCAGCTGTAACTTAAAAGACAGCCCCATTACTG,"Intron (Gm31816-201/Gm31816-201, intron 1 of 5)",9,47530173,47853385,323213,1,Cadm1-204,-162315,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,77,54725,ENSMUSG00000032076,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11876,cg00195577,-0.0000278,0.0000102,-2.729794718,0.00669963,loss,ns,0.00000514,0.0000173,0.296975607,0.766684019,pos,ns,-0.004339906,0.005070825,-0.855858094,0.392737307,neg,ns,0.405897842,-0.0000772,0.000174385,-0.44248371,0.658447782,neg,ns,0.247907424,Tle3,Tle3_fiveUTR,9,61373423,61373472,61373423,61373424,50,-,CGACCCCTCCCTGCCATGTATCCGCAGGGCAGACATCCGGTGAGTAATTG,Promoter (<=1kb),9,61373438,61416716,43279,1,Tle3-202,0,Tle3-218;Tle3-204;Tle3-201;Tle3-215;Tle3-212;Tle3-208;Tle3-207;Tle3-217;Tle3-202;Tle3-206;Tle3-210;Tle3-205;Tle3-211;Tle3-209;Tle3-213,Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,30,21887,ENSMUSG00000032280,conserved gene and region,9,61372388,61373461,1074,*,1074,110,0.683426443,0.879489012,0.102420857,1.55E-84,CpGisland,TRUE,NA,NRS
15835,cg04653168,-0.00000931,0.00000513,-1.814160374,0.070619657,loss,ns,0.00000259,0.00000871,0.2969327,0.766716746,pos,ns,-0.001223651,0.00255305,-0.479289989,0.632070273,neg,ns,0.199234635,0.0000333,0.0000878,0.379735456,0.704401809,pos,ns,0.893973147,Scube1,Scube1_Exon,15,83651666,83651715,83651666,83651667,50,-,CGCCGTTTCACCCGCTTGTCCACATCAGCTACTGACGTGGCATTGAACTG,"Exon (Scube1-201/Scube1, exon 7 of 23)",15,83604999,83725021,120023,2,Scube1-204,73306,Scube1-204;Scube1-202;Scube1-201;Scube1-203;Scube1-205;Scube1-206,Scube1;Scube1;Scube1;Scube1;Scube1;Scube1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,8,64706,ENSMUSG00000016763,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25287,cg10989694,-0.0000103,0.00000547,-1.873134831,0.061990646,loss,ns,-0.00000276,0.0000093,-0.296901747,0.766740356,neg,ns,-0.007793335,0.002724503,-2.860460953,0.004517506,neg,ns,2.345101272,0.0000333,0.0000937,0.355688383,0.722315858,pos,ns,0.857884204,Ppfia4,Ppfia4_Exon,1,134317146,134317195,134317194,134317195,50,+,ACATTTTATGGTGGCTTTATCCTCTCGGTTCTCTTCCCGAGACACTGGCG,"Exon (Ppfia4-201/Ppfia4, exon 16 of 29)",1,134296783,134332928,36146,2,Ppfia4-201,15733,Ppfia4-201;Ppfia4-203;Ppfia4-205,Ppfia4;Ppfia4;Ppfia4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,68507,ENSMUSG00000026458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7415,cg18950746,-0.00000103,0.0000063,-0.163765683,0.870022324,loss,ns,0.00000317,0.0000107,0.29686421,0.766768988,pos,ns,-0.012506077,0.00313318,-3.991496538,0.000082,neg,ns,4.086095211,0.000428858,0.00010775,3.980130254,0.0000858,pos,ns,0.15257001,Nr2e1,Nr2e1_Intron,10,42578511,42578560,42578559,42578560,50,-,AATGAGCATTATTCATGCACCGCTACATGTATTTGGTTCTCTTCTAATCG,"Intron (Nr2e1-201/Nr2e1, intron 1 of 8)",10,42561963,42583632,21670,2,Nr2e1-201,5072,Nr2e1-201;Nr2e1-203;Nr2e1-204,Nr2e1;Nr2e1;Nr2e1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,11,21907,ENSMUSG00000019803,conserved gene and region,10,42578531,42578638,108,*,108,9,0.583333333,1,0.083333333,0.00000176,CpGisland,TRUE,U13,Hc-P
3950,cg10107826,0.00000209,0.00000342,0.609713361,0.542498337,gain,ns,0.00000172,0.00000581,0.296770875,0.766840183,pos,ns,0.003017761,0.001702277,1.772779222,0.077247257,pos,ns,1.112116932,-0.000113612,0.0000585,-1.940725659,0.05319788,neg,ns,0.936874427,Trp63,Trp63_Exon,16,25876619,25876668,25876667,25876668,50,-,CTCTGCAGTCTCCTTTCAGCCTGCTTCAGGAATGAGCTTGTGGAGCCCCG,"Exon (Trp63-207/Trp63, exon 11 of 11)",16,25683765,25877144,193380,1,Trp63-207,192854,Trp63-207;Trp63-202;Trp63-208;Trp63-204;Trp63-201;Trp63-205,Trp63;Trp63;Trp63;Trp63;Trp63;Trp63,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,8,22061,ENSMUSG00000022510,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27532,cg26097619,-0.00000451,0.00000219,-2.057609614,0.040463623,loss,ns,-0.0000011,0.00000372,-0.296753579,0.766853376,neg,ns,0.002653038,0.001090831,2.432125569,0.015576354,pos,ns,1.807534196,-0.000097,0.0000375,-2.58634985,0.010155524,neg,ns,0.964562123,Zfp64,Zfp64_Intergenic_upstream,2,169216336,169216385,169216336,169216337,50,-,CGAATTAAAGGTTGGGCAATTAATTAAGTGCAAATTCTGTAAAACTGGAC,Distal Intergenic,2,168893331,168955587,62257,2,Zfp64-203,-260798,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,11,22722,ENSMUSG00000027551,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U14,Hc-H
13786,cg06892088,-0.00000222,0.00000198,-1.119392419,0.263839333,loss,ns,0.000001,0.00000337,0.296741314,0.766862731,pos,ns,-0.000114428,0.000986945,-0.115941668,0.907773841,neg,ns,0.042022336,0.0000022,0.0000339,0.064788426,0.948384216,pos,ns,0.931309293,Rfx7,Rfx7_Exon,9,72619447,72619496,72619495,72619496,50,-,TGTTTATGAGTTCCAAACACCATCTTACCTCACCAAAAGTAATAGCACCG,"Exon (Rfx7-202/Rfx7, exon 9 of 9)",9,72532240,72622829,90590,1,Rfx7-202,87207,Rfx7-202;Rfx7-201,Rfx7;Rfx7,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,8,319758,ENSMUSG00000037674,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2686,cg22591683,-0.000033,0.00000936,-3.530426017,0.000477835,loss,ns,0.00000472,0.0000159,0.296740408,0.766863423,pos,ns,-0.009305511,0.004658388,-1.997581969,0.046635598,neg,ns,1.331282449,0.000212555,0.000160202,1.326797683,0.185552105,pos,ns,0.702758139,Magef1,Magef1_Intergenic_upstream,16,21377846,21377895,21377846,21377847,50,-,CGTATATTAGCAAAAACATTCCATCTGGGCTGGGATTTGTCTCATTGCTT,Distal Intergenic,16,21331902,21333356,1455,2,Magef1-201,-44539,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,3,76222,ENSMUSG00000116632,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6202,cg25533774,0.0000582,0.0000126,4.626784734,0.00000546,gain,ns,0.00000634,0.0000214,0.29671635,0.766881774,pos,ns,0.01064435,0.006259507,1.700509421,0.090038039,pos,ns,1.045573974,-0.000180878,0.000215264,-0.840260687,0.401409828,neg,ns,0.23241428,Sostdc1,Sostdc1_fiveUTR,12,36314131,36314180,36314179,36314180,50,+,CTCTGTGTTTTCACTCTGAAGCTCTACACAACTTTACACCTGAATGAACG,Promoter (<=1kb),12,36314139,36318452,4314,1,Sostdc1-201,0,Sostdc1-201,Sostdc1,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,2,66042,ENSMUSG00000036169,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19775,cg12368664,0.000000303,0.00000215,0.140775897,0.888138415,gain,ns,0.00000108,0.00000365,0.29662595,0.766950733,pos,ns,0.000404735,0.001070624,0.378036289,0.705662359,pos,ns,0.151403048,-0.000058,0.0000368,-1.574125856,0.11647834,neg,ns,0.954413669,Ppp4r3a,Ppp4r3a_Exon,12,101051571,101051620,101051571,101051572,50,+,CGAAGCAGGCCCATAAGCTGGACTGCTCCTCCAAGTTCAGGATCTGTATC,"Exon (Ppp4r3a-201/Ppp4r3a, exon 8 of 15)",12,101039409,101083663,44255,2,Ppp4r3a-201,32043,Ppp4r3a-201;Ppp4r3a-205;Ppp4r3a-202;Ppp4r3a-206,Ppp4r3a;Ppp4r3a;Ppp4r3a;Ppp4r3a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,10,68734,ENSMUSG00000041846,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17730,cg03420933,-0.00000874,0.00000322,-2.712714225,0.007046269,loss,ns,-0.00000162,0.00000547,-0.296596333,0.766973325,neg,ns,-0.001400485,0.001602904,-0.873717085,0.382948665,neg,ns,0.41685944,0.0000622,0.0000551,1.129057428,0.259746551,pos,ns,0.911801975,Fto,Fto_threeUTR,8,91525769,91525818,91525769,91525770,50,+,CGTATTAGGTTTGATAAATGAACTGTGAAGAGGCCCATCTGGCTCTCAAC,3' UTR,8,91313525,91668439,354915,1,Fto-201,212244,Fto-201;Fto-203;Fto-205,Fto;Fto;Fto,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,26,26383,ENSMUSG00000055932,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8541,cg10467119,0.00000536,0.00000509,1.053840061,0.292776828,gain,ns,0.00000256,0.00000865,0.296594574,0.766974667,pos,ns,-0.002241703,0.002532782,-0.885075266,0.376802021,neg,ns,0.423886777,0.000109142,0.0000871,1.253030654,0.211138857,pos,ns,0.820233599,Btrc,Btrc_Intron,19,45317598,45317647,45317646,45317647,50,-,CTTGCTCGGGGCGTCTCCCTACTGAAGAATTATGTTGCATAAAGCAGCCG,"Intron (Gm28578-208/Gm28578-208, intron 3 of 6)",19,45363734,45507736,144003,1,Btrc-204,-46136,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,63,98,12234,ENSMUSG00000025217,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3969,cg06496613,-0.0000348,0.00000774,-4.495889077,0.0000098,loss,ns,-0.0000039,0.0000132,-0.296578133,0.766987208,neg,ns,-0.001271935,0.003852739,-0.33013785,0.741518794,neg,ns,0.129877837,-0.0000181,0.000132495,-0.136768741,0.891302372,neg,ns,0.823484944,Nacc2,Nacc2_Exon,2,26061323,26061372,26061371,26061372,50,-,GCAGCTGAATTCATCACACTTGGAAACCTACCAAGAACGTTAACACCTCG,"Exon (Nacc2-203/Nacc2, exon 2 of 2)",2,26055535,26092177,36643,2,Nacc2-202,30805,Nacc2-202;Nacc2-201;Nacc2-203;Nacc2-208;Nacc2-204,Nacc2;Nacc2;Nacc2;Nacc2;Nacc2,0;0;0;30447;29003,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,4,67991,ENSMUSG00000026932,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23026,cg15710854,0.00000445,0.00000308,1.444694284,0.149553769,gain,ns,0.00000155,0.00000524,0.296498084,0.767048274,pos,ns,0.001372089,0.001533791,0.894573458,0.371709166,pos,ns,0.429796729,-0.00000378,0.0000527,-0.07162783,0.94294428,neg,ns,0.040720039,Rab3ip,Rab3ip_Promoter,10,116949397,116949446,116949445,116949446,50,+,AGGCCCCATAAAACTGGTGAAATATTTAACAGTATCAAATATTTACTACG,Promoter (<=1kb),10,116905784,116950380,44597,2,Rab3ip-201,934,Rab3ip-201;Rab3ip-203;Rab3ip-205;Rab3ip-202,Rab3ip;Rab3ip;Rab3ip;Rab3ip,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,1,2,216363,ENSMUSG00000064181,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6371,cg14502980,0.0000312,0.00000629,4.96645285,0.00000113,gain,yes,0.00000317,0.0000107,0.296401198,0.767122185,pos,ns,0.007353617,0.003129366,2.349873981,0.019406645,pos,ns,1.712049537,-0.000143142,0.000107619,-1.330085756,0.184467746,neg,ns,0.111094077,Pknox2,Pknox2_Intron,9,37054205,37054254,37054253,37054254,50,+,TAAGTCCAGAACCCGGCTGAGTAGGGGAATTGTTCTGAGAAAGTGGCCCG,"Intron (Pknox2-207/Pknox2, intron 1 of 10)",9,36890982,37083309,192328,2,Pknox2-207,29055,Pknox2-207;Pknox2-201;Pknox2-202;Pknox2-206;Pknox2-204;Pknox2-205;Pknox2-208;Pknox2-210;Pknox2-209;Pknox2-212;Pknox2-211,Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,47,208076,ENSMUSG00000035934,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18910,cg14035490,-0.000044,0.0000092,-4.777245232,0.00000275,loss,ns,-0.00000463,0.0000156,-0.296312315,0.767189992,neg,ns,-0.014436018,0.004580385,-3.151704253,0.001781851,neg,ns,2.749128661,0.00023792,0.000157519,1.510417819,0.131955451,pos,ns,0.784317524,Dach1,Dach1_Intron,14,97868666,97868715,97868714,97868715,50,-,AGATGGGCTGAGAAAAACACGATTCATAAATCCTTAACTGCCTGAGATCG,"Intron (Dach1-201/Dach1, intron 6 of 10)",14,97786853,98169543,382691,2,Dach1-201,300828,Dach1-201;Dach1-202;Dach1-203,Dach1;Dach1;Dach1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,76,13134,ENSMUSG00000055639,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24278,cg19537132,0.00000293,0.00000535,0.548362598,0.583837628,gain,ns,-0.00000269,0.00000909,-0.296229564,0.767253123,neg,ns,0.002282026,0.002662983,0.856943422,0.392138116,pos,ns,0.406560942,-0.000103142,0.0000916,-1.126258478,0.260927236,neg,ns,0.924274992,Pou3f1,Pou3f1_Intron,4,124465570,124465619,124465570,124465571,50,-,CGAGATGCTTAATTCAAAGGCGCTCTGTCAACAGGACTGATTTGTGTGGC,"Intron (1700057H15Rik-202/1700057H15Rik-202, intron 2 of 3)",4,124656807,124660655,3849,1,Pou3f1-201,-191237,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,43,85,18991,ENSMUSG00000090125,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22123,cg00513357,0.0000329,0.0000131,2.514606977,0.012422476,gain,ns,-0.00000659,0.0000223,-0.295987306,0.767437952,neg,ns,0.021929997,0.00651873,3.364151683,0.000864228,pos,ns,3.063371916,-0.001351018,0.000224179,-6.026527742,4.75E-09,neg,yes,0.353354525,Eif4g2,Eif4g2_Exon,7,111080273,111080322,111080321,111080322,50,+,CAGGAATCCATTTCTGAGCGTTTTGCCCTGGGGTTTTCCCCAGGAACTCG,"Exon (Eif4g2-213/Eif4g2, exon 4 of 22)",7,111067750,111083030,15281,2,Eif4g2-213,2708,Eif4g2-213;Eif4g2-206;Eif4g2-204;Eif4g2-211;Eif4g2-210;Eif4g2-209;Eif4g2-203;Eif4g2-201;Eif4g2-212;Eif4g2-205,Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2;Eif4g2,0;0;-4888;-4064;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,20,22,13690,ENSMUSG00000005610,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U4,Pr-F
19075,cg26614705,0.0000217,0.00001,2.158976733,0.031618963,gain,ns,0.00000505,0.0000171,0.295934144,0.767478513,pos,ns,0.000911926,0.005000346,0.182372513,0.855409598,pos,ns,0.067825881,0.0000281,0.000171961,0.163386712,0.870320428,pos,ns,0.147295972,Neurod2,Neurod2_threeUTR,11,98325427,98325476,98325475,98325476,50,-,CTCATTTACATAAATATTTATTAATCGTCATTAAACTGAACAGAAACACG,3' UTR,11,98325415,98329648,4234,2,Neurod2-201,4172,Neurod2-201,Neurod2,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,22,18013,ENSMUSG00000038255,conserved gene and region,11,98325452,98325643,192,*,192,11,0.541666667,0.805184903,0.057291667,0.00000315,CpGisland,TRUE,U13,Hc-P
17214,cg00240849,-0.0000674,0.0000106,-6.348642207,7.71E-10,loss,yes,-0.00000534,0.000018,-0.29588587,0.767515346,neg,ns,-0.005028374,0.005284378,-0.951554631,0.342064202,neg,ns,0.465892374,-0.000159788,0.000181729,-0.879261194,0.379940715,neg,ns,0.873400546,Slc4a4,Slc4a4_Exon,5,89228879,89228928,89228879,89228880,50,+,CGACCTCAGCTTCCTGGATGATGTCATTCCAGAAAAGGACAAGAAAAAGA,"Exon (Slc4a4-210/Slc4a4, exon 24 of 26)",5,88886486,89234876,348391,1,Slc4a4-210,342393,Slc4a4-210;Slc4a4-207;Slc4a4-202;Slc4a4-208;Slc4a4-203,Slc4a4;Slc4a4;Slc4a4;Slc4a4;Slc4a4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,54403,ENSMUSG00000060961,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2216,cg26821197,0.00000858,0.0000139,0.616543131,0.537988609,gain,ns,0.00000699,0.0000236,0.295848821,0.767543614,pos,ns,0.009089758,0.006922871,1.313003983,0.190152708,pos,ns,0.720897485,-0.000343511,0.000238077,-1.442855507,0.150070826,neg,ns,0.813598857,Gm5252,Gm5252_Intergenic_upstream,1,18634263,18634312,18634263,18634264,50,-,CGACTGCTATGAACTGAAGCCACAGCCTAAACCAGGTAATATACCCTGAC,Distal Intergenic,1,18708428,18709336,909,1,Gm5252-201,-74165,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,2,383499,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27806,cg08846022,0.0000269,0.00000368,7.292675863,2.55E-12,gain,yes,-0.00000185,0.00000626,-0.295793156,0.767586087,neg,ns,0.00577454,0.00183369,3.149135786,0.001797091,pos,ns,2.745429972,-0.0000514,0.0000631,-0.815220307,0.41557209,neg,ns,0.934021688,Esrrg,Esrrg_Intron,1,187829404,187829453,187829404,187829405,50,+,CGAATAAACATGTTTTGCTTCAGCGATTTAAAGAATATGGTCTTTGGAGT,"Intron (Esrrg-204/Esrrg, intron 3 of 3)",1,187608791,188043502,434712,1,Esrrg-204,220613,Esrrg-204;Esrrg-203,Esrrg;Esrrg,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,60,26381,ENSMUSG00000026610,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8264,cg10269735,-0.00000079,0.00000185,-0.425982943,0.670415887,loss,ns,-0.000000931,0.00000315,-0.295721024,0.767641125,neg,ns,-0.0000612,0.000922468,-0.066350147,0.947141829,neg,ns,0.023584983,-0.00000921,0.0000317,-0.290202862,0.771855073,neg,ns,0.929155447,Jarid2,Jarid2_Exon,13,44906292,44906341,44906340,44906341,50,+,CAGCAAGTGACTGACCTCAAAAAATGGAACAAACTAGCAGACATGCTGCG,"Exon (Jarid2-210/Jarid2, exon 9 of 19)",13,44730774,44920108,189335,1,Jarid2-210,175518,Jarid2-210;Jarid2-201;Jarid2-209;Jarid2-208;Jarid2-216;Jarid2-211,Jarid2;Jarid2;Jarid2;Jarid2;Jarid2;Jarid2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,21,16468,ENSMUSG00000038518,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11317,cg10724086,0.00000636,0.00000265,2.395156369,0.017206462,gain,ns,-0.00000133,0.00000451,-0.295644035,0.767699871,neg,ns,0.002588913,0.001321065,1.959716559,0.050924662,pos,ns,1.293071847,-0.0000266,0.0000454,-0.585866526,0.5583915,neg,ns,0.044718673,Foxa1,Foxa1_Exon,12,57546784,57546833,57546784,57546785,50,+,CGGCTAAGAGCAGGTGAGTCACAGCACCGGTTTATATCTTTATGACATAA,Promoter (<=1kb),12,57545834,57546916,1083,2,Foxa1-202,83,Foxa1-201;Foxa1-202,Foxa1;Foxa1,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,7,15375,ENSMUSG00000035451,mapped to different genes,12,57546636,57546961,326,*,326,19,0.54601227,0.782367058,0.058282209,1.74E-10,CpGisland,TRUE,U3,Pr-B
9585,cg24154325,0.00000673,0.0000153,0.440134012,0.660146763,gain,ns,0.00000767,0.000026,0.295628231,0.76771193,pos,ns,0.001762788,0.007604822,0.231798664,0.81684733,pos,ns,0.087859106,0.000370685,0.000261529,1.417374539,0.157377722,pos,ns,0.383530747,Gm43517,Gm43517_Intron,12,49395185,49395234,49395233,49395234,50,+,CCGATTGTTAAAGTGCAAAGTGATGTCAGTACCATTTCCATTGCCTTTCG,"Intron (3110039M20Rik-201/3110039M20Rik-201, intron 2 of 2)",12,49385174,49394127,8954,1,Gm43517-201,10011,Gm43517-201,Gm43517,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,5,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
3142,cg01186017,-0.000043,0.0000119,-3.622579545,0.000340692,loss,ns,0.00000596,0.0000202,0.295403129,0.7678837,pos,ns,-0.011001014,0.005911622,-1.860913121,0.063703014,neg,ns,1.195840016,-0.0000479,0.0002033,-0.235389901,0.814061545,neg,ns,0.741946407,Gm11879,Gm11879_Intergenic_downstream,4,22971304,22971353,22971304,22971305,50,-,CGCATGTGCAGCAGCATTATAATGGTTGCCAAGCAACCTAAAGGAACCAT,Distal Intergenic,4,22704057,22704758,702,1,Gm11879-201,267296,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,19,19,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21819,cg09972712,0.0000277,0.0000282,0.979875225,0.327911794,gain,ns,0.0000142,0.000048,0.295202061,0.76803714,pos,ns,-0.000708841,0.014051704,-0.050445223,0.959800086,neg,ns,0.017819215,0.000476446,0.000483237,0.985947258,0.324927886,pos,ns,0.305021094,Lmo1,Lmo1_Intergenic_upstream,7,109196695,109196744,109196695,109196696,50,-,CGTGTTACCAGAGAACTGACTGGCGTGAATTGAGCCTTTAATCCCATTGA,Distal Intergenic,7,109138675,109175207,36533,2,Lmo1-202,-21537,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,34,66,109594,ENSMUSG00000036111,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3857,cg10874497,0.00000785,0.00000182,4.321804019,0.0000209,gain,ns,-0.000000911,0.00000309,-0.295184899,0.768050237,neg,ns,-0.000789352,0.000904494,-0.872700291,0.383501912,neg,ns,0.416232467,0.0000162,0.0000311,0.519672343,0.603662825,pos,ns,0.043053215,Dmrt3,Dmrt3_Promoter,19,25608109,25608158,25608157,25608158,50,-,TCCCATTATGTGCTTGAATAAACCCTTTCTGCAAACAGAAATGGGACTCG,Promoter (2-3kb),19,25610301,25610867,567,1,Dmrt3-202,-2192,Dmrt1-201;Dmrt1-202;Dmrt3-202;Dmrt3-201,Dmrt1;Dmrt1;Dmrt3;Dmrt3,0;0;-2143;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,5,240590,ENSMUSG00000042372,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
8602,cg10371957,0.0000113,0.00000789,1.430892401,0.153468313,gain,ns,0.00000395,0.0000134,0.294961441,0.768220775,pos,ns,0.007434808,0.003927249,1.893133983,0.059271239,pos,ns,1.227155998,-0.000180884,0.000135058,-1.339309166,0.18145116,neg,ns,0.81764154,Dscaml1,Dscaml1_Intron,9,45432928,45432977,45432976,45432977,50,+,ATGTTCGAGCCTGTTACAGAAAACAATATCCTCTTGCAATAATTTGTACG,"Intron (Dscaml1-208/Dscaml1, intron 3 of 5)",9,45426628,45571224,144597,1,Dscaml1-208,6300,Dscaml1-208;Dscaml1-209;Dscaml1-202;Dscaml1-206;Dscaml1-211;Dscaml1-201;Dscaml1-210,Dscaml1;Dscaml1;Dscaml1;Dscaml1;Dscaml1;Dscaml1;Dscaml1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,32,114873,ENSMUSG00000032087,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20344,cg17797814,0.000117039,0.00000835,14.0195647,6.37E-35,gain,yes,0.00000418,0.0000142,0.294938114,0.768238578,pos,ns,0.004377046,0.00415501,1.053438174,0.292960601,pos,ns,0.533190782,0.0000221,0.00014289,0.154455643,0.877350991,pos,ns,0.062882511,Hoxc5,Hoxc5_Exon,15,103009686,103009735,103009734,103009735,50,-,TTCCACCGCCTATGATCCAGTGAGGCATTTCTCGACCTATGGAGCGGCCG,"Exon (Hoxc6-202/Hoxc6, exon 2 of 3)",15,102967443,103015676,48234,1,Hoxc5-202,42243,Hoxc5-202;Hoxc5-201;Hoxc6-202;Hoxc6-203;Hoxc6-201,Hoxc5;Hoxc5;Hoxc6;Hoxc6;Hoxc6,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,72,134,15424,ENSMUSG00000022485,mapped to different genes,15,103009647,103009812,166,*,166,14,0.602409639,0.948184415,0.084337349,5.77E-10,CpGisland,TRUE,U13,Hc-P
19437,cg01694828,-0.000018,0.00000567,-3.182232449,0.001609628,loss,ns,0.00000284,0.00000963,0.294685433,0.768431433,pos,ns,-0.004123299,0.002819878,-1.46222607,0.144692275,neg,ns,0.839554656,-0.0000476,0.000097,-0.491233472,0.62360892,neg,ns,0.888119533,Gm12689,Gm12689_Intergenic_downstream,4,99311427,99311476,99311427,99311428,50,-,CGGCTGTGAAATAAAATCAACAAAGTTAGTTATGTTTAATTTAACTGTTG,Distal Intergenic,4,99295900,99297258,1359,1,Gm12689-201,15576,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,12,26,100137011,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21638,cg02734933,0.000000807,0.00000177,0.455504619,0.649065126,gain,ns,0.000000886,0.00000301,0.294658545,0.768451956,pos,ns,0.001236279,0.000881233,1.402896812,0.161648342,pos,ns,0.791428744,-0.0000412,0.0000303,-1.360560925,0.174640888,neg,ns,0.06593874,Zfhx3,Zfhx3_fiveUTR,8,108703727,108703776,108703775,108703776,50,+,AGATCCAAAGACTTTTTTTTCTTTTCACTCATCAGCTCCCACTTCCAGCG,5' UTR,8,107942644,108961630,1018987,1,Zfhx3-204,761083,Zfhx3-204;Zfhx3-202,Zfhx3;Zfhx3,0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,11,177,11906,ENSMUSG00000038872,conserved gene and region,8,108703775,108704236,462,*,462,77,0.798701299,1.122633173,0.166666667,1.84E-78,CpGisland,TRUE,U2,Pr-W
3048,cg08921975,0.0000617,0.00000497,12.4227185,4.97E-29,gain,yes,0.00000249,0.00000844,0.294617435,0.768483334,pos,ns,0.006361896,0.00247233,2.573239082,0.010539875,pos,ns,1.977164529,-0.0000273,0.000085,-0.321450829,0.748085395,neg,ns,0.144386597,Pou3f2,Pou3f2_Exon,4,22486914,22486963,22486962,22486963,50,+,GTTACAAAACCAAACTCTCACCACCTCCTTCTCCAGCTGTAAGCTGTCCG,"Exon (Pou3f2-201/Pou3f2, exon 1 of 1)",4,22482780,22488366,5587,2,Pou3f2-201,1403,Pou3f2-201,Pou3f2,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,18,18992,ENSMUSG00000095139,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
21047,cg07497620,-0.0000906,0.0000112,-8.098548036,1.29E-14,loss,yes,0.0000056,0.000019,0.294608577,0.768490096,pos,ns,-0.016866181,0.005565331,-3.0305799,0.002646507,neg,ns,2.577326896,0.000158375,0.000191391,0.827494676,0.408593276,pos,ns,0.765803179,Map3k3,Map3k3_Intergenic_downstream,11,106155556,106155605,106155556,106155557,50,+,CGTTGTATGTTGACGATGCACTTTTATGAATGTAGTTTCTATCGCTGTTT,Downstream (<1kb),11,106152064,106154140,2077,1,Map3k3-202,3492,Limd2-201;Limd2-204;Limd2-202;Limd2-203;Map3k3-201;Map3k3-203;Map3k3-202,Limd2;Limd2;Limd2;Limd2;Map3k3;Map3k3;Map3k3,4537;3804;4322;5255;0;4344;3492,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,2,4,26406,ENSMUSG00000020700,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13104,cg03704861,0.0000183,0.00000327,5.600862828,4.71E-08,gain,yes,-0.00000163,0.00000555,-0.294566076,0.768522536,neg,ns,0.002775086,0.001625566,1.707150914,0.0887953,pos,ns,1.051610022,-0.000120249,0.0000559,-2.151029852,0.032246443,neg,ns,0.069523004,Gm7627,Gm7627_Intergenic_downstream,7,69491105,69491154,69491105,69491106,50,+,CGCGGCGGGTAATTAAAACCAAATTGCAGGCAGGAGATGACTGCACAAGA,Distal Intergenic,7,69605842,69606840,999,2,Gm7627-201,115686,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,11,665410,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10988,cg14620903,0.000031,0.00000497,6.246204485,1.39E-09,gain,yes,-0.00000249,0.00000844,-0.294420105,0.768633956,neg,ns,0.000463751,0.002473343,0.187499642,0.851391566,pos,ns,0.069870656,0.0000231,0.0000851,0.271045773,0.786536217,pos,ns,0.910988315,Macroh2a1,Macroh2a1_Exon,13,56088294,56088343,56088294,56088295,50,-,CGACAGCATCACTGTCGATCGAGGCAATGTCAGCCTGTACAACTTGCAAC,"Exon (Macroh2a1-202/Macroh2a1, exon 6 of 9)",13,56073619,56135631,62013,2,Macroh2a1-201,47288,Macroh2a1-201;Macroh2a1-202;Macroh2a1-203;Macroh2a1-206,Macroh2a1;Macroh2a1;Macroh2a1;Macroh2a1,0;0;-3773;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,9,26914,ENSMUSG00000015937,mapped to different genes,13,56088141,56088314,174,*,174,13,0.58045977,0.887058824,0.074712644,1.25E-08,CpGisland,TRUE,U10,Tr-S
6343,cg17189003,0.00000614,0.00000667,0.920601977,0.357974104,gain,ns,0.00000333,0.0000113,0.294162328,0.768830731,pos,ns,0.002010727,0.003317485,0.606099911,0.54489195,pos,ns,0.263689608,-0.000112406,0.000114088,-0.98525889,0.325265268,neg,ns,0.126406791,Pknox2,Pknox2_Intron,9,36941265,36941314,36941265,36941266,50,+,CGTTTCCAGCCACTAATAAAAAGGATTTGACACAGACTAATAAAGAGAAA,"Intron (Pknox2-207/Pknox2, intron 3 of 10)",9,36890982,37083309,192328,2,Pknox2-207,141995,Pknox2-207;Pknox2-201;Pknox2-202;Pknox2-203;Pknox2-206;Pknox2-204;Pknox2-205;Pknox2-208;Pknox2-210;Pknox2-209,Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,47,208076,ENSMUSG00000035934,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24971,cg08783087,-0.000000132,0.000000768,-0.172168964,0.863417039,loss,ns,-0.000000383,0.00000131,-0.293678297,0.769200258,neg,ns,0.00027112,0.000382416,0.708965056,0.478878984,pos,ns,0.319774222,-0.0000123,0.0000132,-0.9384545,0.348741481,neg,ns,0.975135899,Ptpra,Ptpra_Exon,2,130518945,130518994,130518993,130518994,50,+,ATTAGGTTTAAGAAATACAAGCAAGCTGGGAGCCATTCCAATTCTTTCCG,"Exon (Ptpra-201/Ptpra, exon 5 of 21)",2,130450278,130556124,105847,1,Ptpra-201,68667,Ptpra-201;Ptpra-210;Ptpra-202,Ptpra;Ptpra;Ptpra,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,19262,ENSMUSG00000027303,conserved gene and region,2,130518993,130519148,156,*,156,12,0.512820513,1.172932331,0.076923077,3.87E-08,CpGisland,TRUE,U10,Tr-S
18600,cg05415282,0.0000917,0.0000128,7.184779653,5.04E-12,gain,yes,0.00000637,0.0000217,0.293660906,0.769213536,pos,ns,0.00498295,0.006350006,0.784715874,0.433219422,pos,ns,0.363292081,0.000164986,0.000218376,0.755515024,0.450513679,pos,ns,0.18127995,Hoxb5,Hoxb5_Exon,11,96304116,96304165,96304116,96304117,50,-,CGCCCGAGGGGCAGACTCCGCAAATATTCCCCTGGATGAGGAAGCTTCAC,Promoter (<=1kb),11,96303336,96306121,2786,1,Hoxb5-202,780,Hoxb5-202;Hoxb5-201;Hoxb6-202;Hoxb6-201,Hoxb5;Hoxb5;Hoxb6;Hoxb6,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,22,34,15413,ENSMUSG00000038700,conserved gene and region,11,96303706,96304121,416,*,416,40,0.675480769,0.879120879,0.096153846,5.87E-30,CpGisland,TRUE,U3,Pr-B
14958,cg16873877,0.00000297,0.00000225,1.318825473,0.188200878,gain,ns,-0.00000112,0.00000383,-0.293521279,0.769320142,neg,ns,0.001155264,0.001121841,1.029793462,0.303909756,pos,ns,0.517255358,-0.0000677,0.0000386,-1.753871024,0.080440785,neg,ns,0.0549865,Pvalb,Pvalb_fiveUTR,15,78204140,78204189,78204140,78204141,50,-,CGACATCCTGCAACTGTTTGAGCGGGCAGAGCAAGTGCGAAAAGATTAAA,Promoter (<=1kb),15,78191114,78204237,13124,2,Pvalb-201,48,Pvalb-201;Pvalb-202,Pvalb;Pvalb,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,4,19293,ENSMUSG00000005716,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
26433,cg26925124,0.0000859,0.0000135,6.34547969,7.85E-10,gain,yes,-0.00000675,0.000023,-0.293392883,0.769418178,neg,ns,0.023418678,0.006741063,3.474033345,0.000585702,pos,ns,3.232323291,-0.000831096,0.000231825,-3.585021468,0.000391387,neg,ns,0.26774609,Foxa2,Foxa2_Intron,2,147968750,147968799,147968750,147968751,50,+,CGGTCACATGGCAGCCAGATAGGCCAGGCACCATGGGAATACAAAAGCCG,"Intron (9030622O22Rik-201/9030622O22Rik-201, intron 2 of 6)",2,148044240,148045464,1225,2,Foxa2-203,76665,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,25,15376,ENSMUSG00000037025,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16554,cg03964231,-0.000000378,0.00000389,-0.097108851,0.922702704,loss,ns,0.00000194,0.00000662,0.293355642,0.769446614,pos,ns,0.002522439,0.001938154,1.301465143,0.194065658,pos,ns,0.71205131,-0.0000927,0.0000667,-1.390290853,0.165437941,neg,ns,0.943821499,Camkmt,Camkmt_Intron,17,85431768,85431817,85431816,85431817,50,+,TTTGAGAAGCATTTCCATTTTCTGGAATTGCCTCTGTTTCATGCTTGACG,"Intron (Camkmt-201/Camkmt, intron 8 of 10)",17,85090552,85458588,368037,1,Camkmt-201,341216,Camkmt-201,Camkmt,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,41,44,73582,ENSMUSG00000071037,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24531,cg26126397,-0.00000175,0.00000231,-0.75462243,0.451048436,loss,ns,0.00000115,0.00000393,0.293350668,0.769450412,pos,ns,0.000346681,0.001151838,0.300980656,0.763631016,pos,ns,0.117116441,0.0000132,0.0000396,0.334490346,0.738235765,pos,ns,0.94212842,AU040320,AU040320_Exon,4,126842546,126842595,126842594,126842595,50,+,GGGGATGTTCATCCGCCAGATTGGGGTCCTCCTGGGGGTGCTGGATTCCG,"Exon (AU040320-203/AU040320, exon 16 of 24)",4,126753555,126870070,116516,1,AU040320-203,88991,AU040320-203;AU040320-201;AU040320-202;AU040320-211,AU040320;AU040320;AU040320;AU040320,0;0;0;7267,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,100317,ENSMUSG00000028830,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15985,cg02018583,-0.00000295,0.000000908,-3.247684413,0.00129102,loss,ns,-0.000000452,0.00000154,-0.293265676,0.76951531,neg,ns,-0.000637851,0.000451751,-1.411952679,0.15896688,neg,ns,0.79869335,-0.0000209,0.0000155,-1.342947622,0.180271348,neg,ns,0.028864046,Tshz1,Tshz1_fiveUTR,18,84086440,84086489,84086440,84086441,50,+,CGCAGAGCTTTCAGACAGTCTCAACTGATAGACAGACACATCGAGCTGCT,Promoter (<=1kb),18,84012082,84086451,74370,2,Tshz1-202,0,Tshz1-201;Tshz1-202;Tshz1-203;Tshz1-204;Zadh2-201;Zadh2-202,Tshz1;Tshz1;Tshz1;Tshz1;Zadh2;Zadh2,0;0;0;0;0;-2182,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,18,110796,ENSMUSG00000046982,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
19701,cg23559331,0.0000454,0.00000419,10.81845955,2.36E-23,gain,yes,0.00000209,0.00000713,0.293265568,0.769515392,pos,ns,0.005572238,0.002087835,2.668906727,0.008010471,pos,ns,2.096341955,0.0000563,0.0000718,0.784185317,0.433530164,pos,ns,0.134342232,Kcnh4,Kcnh4_Exon,11,100759552,100759601,100759600,100759601,50,-,GATGGTGTCCAGGAAGGTGTTTTGCGGGGCCAGCAACCCCTTCATGACCG,Promoter (<=1kb),11,100740376,100759740,19365,2,Kcnh4-201,139,Hcrt-202;Hcrt-201;Kcnh4-201;Kcnh4-202,Hcrt;Hcrt;Kcnh4;Kcnh4,3327;3330;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,380728,ENSMUSG00000035355,conserved gene and region,11,100759517,100759733,217,*,217,29,0.737327189,0.983434912,0.133640553,2.11E-26,CpGisland,TRUE,U3,Pr-B
20156,cg05272031,-0.000038,0.00000692,-5.49385986,8.21E-08,loss,yes,0.00000345,0.0000118,0.293264008,0.769516583,pos,ns,-0.004153723,0.003444589,-1.205869083,0.228787531,neg,ns,0.640567649,-0.0000626,0.000118459,-0.528454216,0.597562229,neg,ns,0.897900727,Tspan2,Tspan2_Intron,3,102748870,102748919,102748870,102748871,50,+,CGCCAGCCTGCCTAGCCACTGCCTGTGCCAGCCACTCAGCCTCTCCATGA,"Intron (Tspan2-201/Tspan2, intron 1 of 7)",3,102734529,102772292,37764,1,Tspan2-201,14341,Tspan2-201;Tspan2-203;Tspan2-202,Tspan2;Tspan2;Tspan2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,70747,ENSMUSG00000027858,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8873,cg15417880,-0.00000626,0.00000273,-2.289243222,0.022737266,loss,ns,0.00000136,0.00000465,0.292826945,0.769850339,pos,ns,-0.000790046,0.00136095,-0.580510713,0.561992006,neg,ns,0.250269862,0.000064,0.0000468,1.366847577,0.172663503,pos,ns,0.927833331,Ncbp1,Ncbp1_Exon,4,46169163,46169212,46169163,46169164,50,+,CGTAAGATGAACAAACATGTCCTGAAGATCCAGAAAGAGCTGGAAGAAGC,"Exon (Ncbp1-201/Ncbp1, exon 20 of 23)",4,46138613,46172403,33791,1,Ncbp1-201,30550,Ncbp1-201;Ncbp1-203;Xpa-202,Ncbp1;Ncbp1;Xpa,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,433702,ENSMUSG00000028330,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3099,cg01019040,0.0000231,0.00000542,4.262326378,0.0000269,gain,ns,-0.0000027,0.00000921,-0.292788471,0.769879721,neg,ns,0.006252012,0.002697413,2.317780623,0.02111205,pos,ns,1.675469601,-0.000172668,0.0000928,-1.86137501,0.063637593,neg,ns,0.011595899,Lhfpl3,Lhfpl3_Exon,5,22746369,22746418,22746369,22746370,50,-,CGGCGTGGACACCCCGCAAGCCGGCTATTTCGGGCTCTTCCACTACTGCA,Promoter (<=1kb),5,22746059,23275597,529539,1,Lhfpl3-202,310,Lhfpl3-202,Lhfpl3,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,11,269629,ENSMUSG00000106379,conserved gene and region,5,22746271,22746758,488,*,488,33,0.610655738,0.733834587,0.067622951,9.76E-20,CpGisland,TRUE,U3,Pr-B
24863,cg15855498,-0.00000434,0.0000012,-3.600726169,0.000369383,loss,ns,0.000000599,0.00000205,0.292768888,0.769894676,pos,ns,-0.0000214,0.000599256,-0.035687925,0.971554168,neg,ns,0.012532981,0.0000113,0.0000206,0.547445869,0.584466359,pos,ns,0.034437409,Zc3h6,Zc3h6_fiveUTR,2,128967791,128967840,128967839,128967840,50,-,GTTCTTGACCAAACATGACAGACTCTGAACATGCAGGGCACGACAGGTCG,Promoter (<=1kb),2,128967402,129018563,51162,1,Zc3h6-202,389,Zc3h6-202;Zc3h6-201,Zc3h6;Zc3h6,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,7,8,78751,ENSMUSG00000042851,conserved gene but different region,2,128967831,128968196,366,*,366,57,0.773224044,1.042266187,0.155737705,4.44E-56,CpGisland,TRUE,U1,Pr-A
13192,cg26151940,0.0000198,0.00000657,3.010676393,0.002820921,gain,ns,0.00000327,0.0000112,0.292709583,0.769939968,pos,ns,0.004963673,0.003268074,1.518837245,0.12982265,pos,ns,0.88664953,-0.000158845,0.000112389,-1.41335247,0.158555435,neg,ns,0.018184678,Ikzf2,Ikzf2_fiveUTR,1,69687235,69687284,69687283,69687284,50,-,GGAGCAGGGTTAGCCCGGGACAGCTGGTCAAACCCCGAGAAACCGATCCG,Promoter (<=1kb),1,69538582,69687245,148664,2,Ikzf2-202,0,Ikzf2-201;Ikzf2-207;Ikzf2-202;Ikzf2-204;Ikzf2-208;Ikzf2-209;Ikzf2-206;Ikzf2-203;Ikzf2-205,Ikzf2;Ikzf2;Ikzf2;Ikzf2;Ikzf2;Ikzf2;Ikzf2;Ikzf2;Ikzf2,0;0;0;0;0;0;-1935;-2699;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,14,22779,ENSMUSG00000025997,conserved gene but different region,1,69687232,69687830,599,*,599,99,0.777963272,1.094760744,0.165275459,2.69E-100,CpGisland,TRUE,NA,NRS
27919,cg09244470,0.0000127,0.0000103,1.240748634,0.215636785,gain,ns,-0.0000051,0.0000174,-0.292598848,0.770024538,neg,ns,-0.002976489,0.005101654,-0.583436075,0.560024001,neg,ns,0.25179336,-0.000102558,0.000175445,-0.584555027,0.559272127,neg,ns,0.62627921,Prox1,Prox1_Intergenic_upstream,1,190334285,190334334,190334285,190334286,50,+,CGGCAGATGGGGTGAGAGCGGCTTCTGCCAAGTGATAACTGTTATTCCTT,Distal Intergenic,1,190118035,190170714,52680,2,Prox1-202,-163571,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,13,59,19130,ENSMUSG00000010175,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24857,cg24082093,0.0000264,0.0000186,1.415317954,0.157979081,gain,ns,-0.00000926,0.0000316,-0.292580454,0.770038586,neg,ns,0.019791606,0.009270426,2.134918758,0.033551528,pos,ns,1.474287695,-0.000724843,0.000318809,-2.273596651,0.023673901,neg,ns,0.4553544,Mettl7b,Mettl7b_Exon,10,128960577,128960626,128960577,128960578,50,+,CGCTCATATTGGAGGTGCCTGTTCTCAGCCATGCTCTTTGTCAGGAACTT,Promoter (<=1kb),10,128958274,128960988,2715,2,Mettl7b-201,362,Itga7-201;Itga7-202;Itga7-204;Mettl7b-201,Itga7;Itga7;Itga7;Mettl7b,26759;26757;6804;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,71664,ENSMUSG00000025347,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
470,cg24180066,-0.00000096,0.00000208,-0.462029805,0.644384027,loss,ns,0.00000103,0.00000353,0.292443959,0.770142835,pos,ns,0.002398238,0.001034575,2.318090545,0.021094973,pos,ns,1.675821033,-0.0000344,0.0000356,-0.965731452,0.334931348,neg,ns,0.075386193,Zfp787,Zfp787_fiveUTR,7,6155926,6155975,6155974,6155975,50,-,AGACCCTGGGGTCAGGGGGACGGGCGCCCAGGCCGGAAGTGACCTTCCCG,Promoter (<=1kb),7,6131491,6155971,24481,2,Zfp787-201,0,Zfp787-201;Zfp787-202;Zfp787-204;Zfp787-205;Zfp787-203;Zfp787-206,Zfp787;Zfp787;Zfp787;Zfp787;Zfp787;Zfp787,0;-331;0;0;-4878;-492,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,2,67109,ENSMUSG00000046792,conserved gene but different region,7,6155098,6156491,1394,*,1394,147,0.692252511,0.908058813,0.105451937,9.28E-115,CpGisland,TRUE,U1,Pr-A
4038,cg15659710,-0.000111889,0.0000191,-5.852671171,1.23E-08,loss,yes,-0.00000949,0.0000325,-0.292128125,0.77038407,neg,ns,-0.020490636,0.00951501,-2.153506661,0.032049736,neg,ns,1.494175545,0.000343636,0.00032722,1.05016722,0.294459218,pos,ns,0.65475356,Gm45647,Gm45647_Intergenic_upstream,8,26622689,26622738,26622689,26622690,50,-,CGAGTCATACATTTCTGCTTTATGTTTCCAAAGAAGCAAGTGTGACTGTC,Distal Intergenic,8,26780315,26780509,195,1,Gm45647-201,-157626,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,46,62,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16263,cg11879501,-0.00000802,0.00000287,-2.796430297,0.005489761,loss,ns,0.00000142,0.00000487,0.291938891,0.770528618,pos,ns,0.000585896,0.001427279,0.410498251,0.681724062,pos,ns,0.166391377,-0.0000832,0.0000491,-1.695166033,0.091048059,neg,ns,0.950198373,Mrm1,Mrm1_Intergenic_downstream,11,84686743,84686792,84686743,84686744,50,+,CGATGCCTGTTTTATAGCCTCACAAATAGATGTATGAACTCAAGCATATA,Distal Intergenic,11,84814743,84815390,648,2,Mrm1-203,128598,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,37,42,217038,ENSMUSG00000018405,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15796,cg25148254,-0.000014,0.00000417,-3.359914258,0.000877114,loss,ns,0.00000207,0.00000708,0.291934735,0.770531793,pos,ns,-0.003549777,0.002072991,-1.712393903,0.087824086,neg,ns,1.05638636,0.0000291,0.0000713,0.408634377,0.683090133,pos,ns,0.904824741,Mef2c,Mef2c_Intergenic_upstream,13,83485097,83485146,83485145,83485146,50,+,ACTTGGGCGTGGAATCCTGGCCTCACAAGAAGAGGCATTAAATGACTGCG,Distal Intergenic,13,83504034,83663343,159310,1,Mef2c-218,-18888,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,41,17260,ENSMUSG00000005583,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9794,cg16611537,0.0000314,0.00000709,4.425635478,0.0000133,gain,ns,-0.00000352,0.0000121,-0.291717256,0.770697926,neg,ns,0.004771225,0.00353066,1.351368936,0.177562617,pos,ns,0.750648462,-0.0000707,0.000121419,-0.581880839,0.56106985,neg,ns,0.067746115,Trps1,Trps1_fiveUTR,15,50889654,50889703,50889654,50889655,50,-,CGGCGGCCAAAGCCATGAACCGTCTTCTGTTGTTTGCAGAGTTGATCTTG,Promoter (<=1kb),15,50654752,50889691,234940,2,Trps1-202,0,Trps1-202;Trps1-206;Trps1-204;Trps1-205;Trps1-201;Trps1-208,Trps1;Trps1;Trps1;Trps1;Trps1;Trps1,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,36,83925,ENSMUSG00000038679,conserved gene and region,15,50889495,50889675,181,*,181,26,0.718232044,1.135617761,0.143646409,1.20E-24,CpGisland,TRUE,U1,Pr-A
15027,cg11313951,-0.00000576,0.00000443,-1.298296812,0.195150396,loss,ns,-0.0000022,0.00000753,-0.291676593,0.77072899,neg,ns,0.003055873,0.002206397,1.385006164,0.167046461,pos,ns,0.77716272,-0.000118193,0.0000759,-1.557676036,0.120330347,neg,ns,0.96556856,Slc10a7,Slc10a7_Intron,8,78556916,78556965,78556964,78556965,50,-,TAAGGGCCTATGGGAACACAGTTGGATTATTATGTTAATGCATGAGCCCG,"Intron (Slc10a7-211/Slc10a7, intron 4 of 10)",8,78509346,78712757,203412,1,Slc10a7-211,47570,Slc10a7-211;Slc10a7-202;Slc10a7-201;Slc10a7-207;Slc10a7-209;Slc10a7-204;Slc10a7-206,Slc10a7;Slc10a7;Slc10a7;Slc10a7;Slc10a7;Slc10a7;Slc10a7,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,6,76775,ENSMUSG00000031684,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1744,cg22892760,-0.00000278,0.00000172,-1.612692809,0.10782878,loss,ns,-0.000000853,0.00000293,-0.291488867,0.770872405,neg,ns,0.000340411,0.000857686,0.396894805,0.691718133,pos,ns,0.160070839,-0.000052,0.0000295,-1.76404794,0.078708801,neg,ns,0.961863257,Cacnb2,Cacnb2_Exon,2,14981306,14981355,14981306,14981307,50,+,CGGAAGTTCAGAGTGAAATCGAAAGGATTTTTGAACTTGCAAGAACATTG,"Exon (Cacnb2-203/Cacnb2, exon 11 of 14)",2,14604306,14987908,383603,1,Cacnb2-203,377000,Cacnb2-203;Cacnb2-210;Cacnb2-214;Cacnb2-202;Cacnb2-211;Cacnb2-212;Cacnb2-206,Cacnb2;Cacnb2;Cacnb2;Cacnb2;Cacnb2;Cacnb2;Cacnb2,0;0;0;0;0;0;-758,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,12296,ENSMUSG00000057914,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25319,cg11175863,-0.0000202,0.0000073,-2.771352287,0.005919679,loss,ns,0.00000361,0.0000124,0.291481407,0.770878105,pos,ns,-0.003977522,0.003631916,-1.095157889,0.2742976,neg,ns,0.561777993,-0.0000605,0.000124901,-0.484040768,0.628698703,neg,ns,0.041336409,Maco1,Maco1_Promoter,4,134853549,134853598,134853597,134853598,50,+,CTTATAAATAGGCCCTATAAATATAACATCCTATATTACGCCTTGTTGCG,Promoter (<=1kb),4,134802759,134853345,50587,2,Maco1-201,-204,Maco1-201;Maco1-203;Maco1-204;Maco1-202,Maco1;Maco1;Maco1;Maco1,0;0;0;-232,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,3,66146,ENSMUSG00000028826,conserved gene and region,4,134853597,134853858,262,*,262,40,0.717557252,1.190909091,0.152671756,4.93E-39,CpGisland,TRUE,U1,Pr-A
24071,cg07878252,0.0000126,0.00000182,6.922953142,2.55E-11,gain,yes,0.000000898,0.00000308,0.291362868,0.770968668,pos,ns,0.000120471,0.000903434,0.133348322,0.894004435,pos,ns,0.048660327,0.0000342,0.0000311,1.099730425,0.272302874,pos,ns,0.04147134,Zic5,Zic5_Intron,14,122450812,122450861,122450860,122450861,50,-,TGAAGTTCCTATGAAACTATTAAACCCGGGTGGAGGTCAGGCTGGAGGCG,"Intron (Gm5089-201/Gm5089-201, intron 1 of 2)",14,122459193,122460021,829,2,Zic5-202,9209,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,26,65100,ENSMUSG00000041703,mapped to different genes,14,122450815,122451209,395,*,395,35,0.675949367,0.802752294,0.088607595,5.51E-25,CpGisland,TRUE,U3,Pr-B
17554,cg26763496,0.000053,0.000019,2.78550714,0.005673413,gain,ns,0.00000942,0.0000323,0.291351484,0.770977365,pos,ns,0.015651501,0.009474618,1.651939989,0.099559286,pos,ns,1.001918226,-0.000292702,0.000325831,-0.898323953,0.36971005,neg,ns,0.494162829,Chd9,Chd9_fiveUTR,8,90955292,90955341,90955292,90955293,50,-,CGCCAAAAATGTCTTCAGTGAAGAGGCCAAGAGGAAGGGTAAGTGAAAGC,5' UTR,8,90828352,91054516,226165,1,Chd9-201,126940,Chd9-201;Chd9-202;Chd9-213;Chd9-203;Chd9-205;Chd9-210;Chd9-208;Chd9-204,Chd9;Chd9;Chd9;Chd9;Chd9;Chd9;Chd9;Chd9,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,5,109151,ENSMUSG00000056608,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
15720,cg13666422,0.00000328,0.00000159,2.057631287,0.040461527,gain,ns,-0.000000789,0.00000271,-0.291337312,0.770988193,neg,ns,0.000713399,0.000793034,0.899581453,0.369041274,pos,ns,0.432925059,-0.00000185,0.0000273,-0.067729818,0.946044376,neg,ns,0.95866636,Gm48156,Gm48156_Intergenic_downstream,13,82972102,82972151,82972150,82972151,50,-,CTTGTGCCCTCCTTGGCATTATAAAATAAGGCTCTTAACATTTCCATACG,Distal Intergenic,13,83189565,83189709,145,2,Gm48156-201,217607,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,16,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23845,cg05454653,0.000000612,0.00000123,0.496781747,0.619695073,gain,ns,0.00000061,0.00000209,0.291324952,0.770997636,pos,ns,0.000898575,0.00061335,1.465027318,0.143926903,pos,ns,0.84185802,-0.0000325,0.0000211,-1.540855426,0.124372095,neg,ns,0.030741483,En1,En1_Promoter,1,120600297,120600346,120600297,120600298,50,+,CGCCAAGCTGATCAGGCGGAATGAAGAGTAATTAAAACCTATAAATTATC,Promoter (2-3kb),1,120602418,120607992,5575,1,En1-201,-2072,En1-201,En1,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,23,36,13798,ENSMUSG00000058665,conserved gene and region,1,120600297,120600444,148,*,148,15,0.540540541,1.38836773,0.101351351,7.56E-12,CpGisland,TRUE,U13,Hc-P
14338,cg13652008.1,-0.0000104,0.00000689,-1.514815069,0.130838165,loss,ns,0.00000341,0.0000117,0.291277642,0.771033782,pos,ns,-0.002636931,0.003427645,-0.769312598,0.442293518,neg,ns,0.354289425,0.0000497,0.000117876,0.421911535,0.673382026,pos,ns,0.843480249,Ltbp1,Ltbp1_Intron,17,75178491,75178540,75178491,75178492,50,-,CGCATGCCTAAAACATTTCCAGGGGTCGGGCTGCAAATAGTGACTTAATA,"Intron (Ltbp1-210/Ltbp1, intron 4 of 34)",17,75005568,75391328,385761,1,Ltbp1-210,172923,Ltbp1-210;Ltbp1-201;Ltbp1-205;Ltbp1-203;Ltbp1-202,Ltbp1;Ltbp1;Ltbp1;Ltbp1;Ltbp1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,9,268977,ENSMUSG00000001870,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21576,cg03673687,0.0000112,0.00000384,2.923706803,0.003713666,gain,ns,0.0000019,0.00000653,0.291271934,0.771038144,pos,ns,0.00195715,0.001913349,1.022892542,0.307156211,pos,ns,0.512640698,-0.00013318,0.0000658,-2.024021894,0.04382529,neg,ns,0.058258302,Eml1,Eml1_fiveUTR,12,108423185,108423234,108423185,108423186,50,+,CGGCCTCAGCATGGAGGACGGCTTCTCCAGCTACAGCAGCCTGTACGACA,5' UTR,12,108370957,108508538,137582,1,Eml1-206,52228,Eml1-206;Eml1-201;Eml1-202;Eml1-203;Eml1-205,Eml1;Eml1;Eml1;Eml1;Eml1,0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,1,68519,ENSMUSG00000058070,conserved gene and region,12,108422931,108423595,665,*,665,89,0.757894737,0.934106692,0.133834587,3.06E-80,CpGisland,TRUE,NA,NRS
5512,cg22934566,-0.0000742,0.0000117,-6.322583538,8.96E-10,loss,yes,0.0000058,0.0000199,0.290940181,0.771291624,pos,ns,-0.011460738,0.00584163,-1.961907517,0.050667742,neg,ns,1.295268453,0.000242863,0.000200893,1.208916035,0.227616355,pos,ns,0.749926481,Kalrn,Kalrn_Exon,16,34153486,34153535,34153486,34153487,50,+,CGAGGAACAAGGTTGCCATCCTGTTAAGAAAAGGGCCGGGCTCTGTGATT,"Exon (Kalrn-207/Kalrn, exon 34 of 34)",16,33975495,34456917,481423,2,Kalrn-201,303382,Kalrn-201;Kalrn-209;Kalrn-217;Kalrn-208;Kalrn-207;Kalrn-206;Kalrn-202;Kalrn-205;Kalrn-204;Kalrn-218,Kalrn;Kalrn;Kalrn;Kalrn;Kalrn;Kalrn;Kalrn;Kalrn;Kalrn;Kalrn,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,18,22,545156,ENSMUSG00000061751,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7829,cg20715593,0.00000957,0.0000055,1.739620086,0.082918269,gain,ns,-0.00000272,0.00000935,-0.290929779,0.771299573,neg,ns,-0.000982478,0.002738175,-0.358807568,0.719983295,neg,ns,0.14267758,-0.000104432,0.0000942,-1.109028321,0.268277582,neg,ns,0.894184692,Ldb2,Ldb2_Intron,5,44473724,44473773,44473724,44473725,50,+,CGAGTTTATGTCCTTAGTGCGCAGCCTGACACTGGAGAACGAGCAATGCT,"Intron (Ldb2-207/Ldb2, intron 8 of 8)",5,44472132,44799619,327488,2,Ldb2-207,325846,Ldb2-207;Ldb2-201;Ldb2-204;Ldb2-205,Ldb2;Ldb2;Ldb2;Ldb2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,9,16826,ENSMUSG00000039706,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14340,cg15667750,-0.0000154,0.0000158,-0.977349788,0.329158084,loss,ns,0.00000781,0.0000268,0.290869567,0.771345582,pos,ns,-0.0049949,0.007862262,-0.635300597,0.525701039,neg,ns,0.279261165,0.0000715,0.000270383,0.26450855,0.791563849,pos,ns,0.537824374,Ltbp1,Ltbp1_Intron,17,75178469,75178518,75178517,75178518,50,-,AGACAGATGTTTTCAGACATGCCGCATGCCTAAAACATTTCCAGGGGTCG,"Intron (Ltbp1-210/Ltbp1, intron 4 of 34)",17,75005568,75391328,385761,1,Ltbp1-210,172901,Ltbp1-210;Ltbp1-201;Ltbp1-205;Ltbp1-203;Ltbp1-202,Ltbp1;Ltbp1;Ltbp1;Ltbp1;Ltbp1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,9,268977,ENSMUSG00000001870,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23910,cg11515877,-0.00000352,0.00000203,-1.731847805,0.084295427,loss,ns,0.000001,0.00000345,0.290792006,0.771404849,pos,ns,-0.00035399,0.001010191,-0.350418879,0.726262344,neg,ns,0.138906473,-0.0000333,0.0000347,-0.959868612,0.33786939,neg,ns,0.956993134,Rwdd3,Rwdd3_Intergenic_downstream,3,121059818,121059867,121059818,121059819,50,+,CGCACAGTCTATCCATTGTAATGATTTGGGGTCAGGATCCTGCCACAAGC,Distal Intergenic,3,121155400,121156820,1421,2,Rwdd3-208,96953,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,4,66568,ENSMUSG00000028133,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10349,cg00809149,-0.00000116,0.00000149,-0.776684124,0.437937373,loss,ns,0.000000738,0.00000254,0.290718318,0.771461156,pos,ns,0.001366602,0.000743882,1.837123366,0.067148804,pos,ns,1.172961721,-0.0000111,0.0000256,-0.433203782,0.665167996,neg,ns,0.951673459,Akap6,Akap6_Intron,12,53143393,53143442,53143393,53143394,50,+,CGTTTTGATAAAAACAGAATTTTTGAATTTTGCCTGAAGGTGACAGGCTG,"Intron (Akap6-201/Akap6, intron 13 of 13)",12,52699383,53155599,456217,1,Akap6-201,444010,Akap6-201;Akap6-202,Akap6;Akap6,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,13,238161,ENSMUSG00000061603,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12554,cg26784682,0.0000439,0.0000235,1.870498722,0.062356714,gain,ns,0.0000116,0.0000399,0.290631072,0.771527827,pos,ns,0.025544274,0.01168951,2.185230474,0.029620222,pos,ns,1.528411695,-0.00084547,0.000402001,-2.103152105,0.036258207,neg,ns,0.593101932,Klhl5,Klhl5_Exon,5,65131598,65131647,65131598,65131599,50,+,CGAAGGTCCAGCCAACTGGATTTTCAGAATTCACCTTCTTGGCCAATGGC,"Exon (Klhl5-201/Klhl5, exon 1 of 11)",5,65107539,65168106,60568,1,Klhl5-204,24059,Klhl5-204;Klhl5-201;Klhl5-205;Klhl5-207;Klhl5-206;Klhl5-203,Klhl5;Klhl5;Klhl5;Klhl5;Klhl5;Klhl5,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,4,71778,ENSMUSG00000054920,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
24235,cg08372282,-0.0000153,0.00000494,-3.108733588,0.002053213,loss,ns,-0.00000244,0.00000839,-0.290620809,0.77153567,neg,ns,-0.006586681,0.00245699,-2.680792559,0.007737769,neg,ns,2.111384244,0.000176934,0.0000845,2.093996368,0.037072227,pos,ns,0.894925591,Gm12902,Gm12902_Intergenic_downstream,4,124086797,124086846,124086845,124086846,50,-,AACTTTATTTTCAGGCCATAAAACACATCCTTTGATAAATTATTTTGCCG,Distal Intergenic,4,123926234,123926555,322,1,Gm12902-201,160612,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,34,34,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12692,cg19280263,-0.00000224,0.00000432,-0.518138444,0.604731274,loss,ns,-0.00000213,0.00000734,-0.290580961,0.77156612,neg,ns,-0.003934823,0.002149756,-1.830358272,0.068156371,neg,ns,1.166493541,0.0000153,0.0000739,0.20671484,0.836368274,pos,ns,0.808080104,Unc80,Unc80_Exon,1,66685631,66685680,66685631,66685632,50,-,CGATGACTCCCAGGGCCTGGCCGCCGAGGGCAGCCTCTCTAGGTACAGTG,"Exon (Unc80-201/Unc80, exon 61 of 65)",1,66468367,66699148,230782,1,Unc80-201,217264,Unc80-201;Unc80-206;Unc80-204,Unc80;Unc80;Unc80,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,9,329178,ENSMUSG00000055567,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16433,cg21017059,-0.00000922,0.00000422,-2.185051091,0.029633499,loss,ns,-0.00000208,0.00000717,-0.290489106,0.771636315,neg,ns,-0.000775203,0.00209952,-0.369228512,0.712209474,neg,ns,0.147392254,-0.0000431,0.0000722,-0.597148703,0.550843995,neg,ns,0.904973779,Cntln,Cntln_Intron,4,84987951,84988000,84987999,84988000,50,+,AATTTAATTACCCTAGCAGTTAACAAGGTCACACCCAGATGCCAAACTCG,"Intron (Cntln-201/Cntln, intron 8 of 25)",4,84884309,85131921,247613,1,Cntln-201,103642,Cntln-201;Cntln-204,Cntln;Cntln,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,25,338349,ENSMUSG00000038070,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14981,cg01814600,-0.0000453,0.00000973,-4.6532177,0.00000485,loss,ns,-0.0000048,0.0000165,-0.290283534,0.771793419,neg,ns,-0.006310346,0.00484284,-1.303025761,0.193532989,neg,ns,0.713244996,0.0000992,0.000166545,0.595749411,0.551777341,pos,ns,0.814351102,Crim1,Crim1_Exon,17,78302990,78303039,78302990,78302991,50,+,CGAGTGTCTCTCTGGCTTATGTGGTTTCCCCGTGTGTGAGGTGGGATCCA,"Exon (Crim1-201/Crim1, exon 5 of 17)",17,78200248,78376592,176345,1,Crim1-201,102742,Crim1-201;Crim1-204;Crim1-205;Crim1-206;Crim1-202,Crim1;Crim1;Crim1;Crim1;Crim1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,50766,ENSMUSG00000024074,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14700,cg23948922,-0.00000431,0.0000028,-1.541442562,0.124229244,loss,ns,0.00000138,0.00000475,0.290264114,0.771808261,pos,ns,0.002872977,0.001391955,2.063987162,0.039850778,pos,ns,1.399563193,-0.000141949,0.0000479,-2.965356487,0.003258086,neg,ns,0.929255504,Epha4,Epha4_threeUTR,1,77373643,77373692,77373643,77373644,50,-,CGAAGACGAAGTAAAAAAAGTGCAGTTCTTCAATTAAAGTGCATGGATGA,3' UTR,1,77367185,77515088,147904,2,Epha4-201,141396,Epha4-201;Epha4-205;Epha4-204;Epha4-203;Epha4-207,Epha4;Epha4;Epha4;Epha4;Epha4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,9,13838,ENSMUSG00000026235,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
176,cg22151587,-0.00000225,0.00000105,-2.151751301,0.032189039,loss,ns,0.000000516,0.00000178,0.290136095,0.771906102,pos,ns,-0.000291394,0.000521204,-0.559078111,0.576512067,neg,ns,0.239191598,0.0000177,0.0000179,0.985472142,0.325160724,pos,ns,0.042276719,Tfap4,Tfap4_fiveUTR,16,4559471,4559520,4559519,4559520,50,-,GTTGCAAAGAGGGCACCTTCTGAGTGGGCACCATGAAATACTCCATAGCG,Promoter (<=1kb),16,4544661,4559854,15194,2,Tfap4-201,334,Tfap4-201;Tfap4-203,Tfap4;Tfap4,0;-688,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,9,83383,ENSMUSG00000005718,conserved gene and region,16,4559519,4559721,203,*,203,20,0.709359606,0.805555556,0.098522168,1.99E-15,CpGisland,TRUE,U1,Pr-A
17946,cg03017480,-0.00000327,0.00000134,-2.441414016,0.015188894,loss,ns,-0.000000659,0.00000227,-0.289993639,0.772014981,neg,ns,0.000309865,0.000666003,0.465260553,0.642071542,pos,ns,0.192416578,-0.000014,0.0000229,-0.609134253,0.542881594,neg,ns,0.040240215,Runx1,Runx1_fiveUTR,16,92697316,92697365,92697364,92697365,50,-,CTCTATGAATGAGAGTGCCTGGAAATGAACGTGCTTTTACTGTAAGCCCG,Promoter (<=1kb),16,92603656,92697328,93673,2,Runx1-202,0,Runx1-201;Runx1-202;Runx1-203;Runx1-205;Runx1-206;Runx1-204,Runx1;Runx1;Runx1;Runx1;Runx1;Runx1,0;0;0;-1821;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,7,10,12394,ENSMUSG00000022952,mapped to different genes,16,92697175,92697868,694,*,694,67,0.687319885,0.817619131,0.096541787,6.68E-50,CpGisland,TRUE,U1,Pr-A
1213,cg00455143,0.0000518,0.0000187,2.778361519,0.005796547,gain,ns,-0.00000919,0.0000317,-0.289939429,0.772056414,neg,ns,0.053364198,0.009285237,5.747209292,2.17E-08,pos,ns,7.663584424,-0.000710859,0.000319319,-2.226176644,0.026720932,neg,ns,0.392964958,Bcor,Bcor_Intron,X,12068070,12068119,12068070,12068071,50,-,CGATAACAAGTGACTAATACATTGCATATCGTTGAAAGAAAATTATTTTT,"Intron (Bcor-202/Bcor, intron 1 of 14)",20,12036740,12080553,43814,2,Bcor-202,12434,Bcor-202;Bcor-203;Bcor-204;Bcor-206;Bcor-201;Bcor-207;Bcor-205,Bcor;Bcor;Bcor;Bcor;Bcor;Bcor;Bcor,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,56,74,71458,ENSMUSG00000040363,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
19315,cg25140691,-0.0000261,0.0000065,-4.023449756,0.0000721,loss,ns,0.0000032,0.000011,0.289894925,0.77209043,pos,ns,-0.004198112,0.003234303,-1.297995976,0.195253625,neg,ns,0.709400895,-0.0000375,0.000111227,-0.33746302,0.735996266,neg,ns,0.678945839,Rara,Rara_Intron,11,98969279,98969328,98969327,98969328,50,+,CTGTGCCCCGGAGCTGAGCAGCTGCCATTTCAATAGAATTAAAGCTTCCG,"Intron (Rara-203/Rara, intron 4 of 8)",11,98927818,98974162,46345,1,Rara-203,41461,Rara-203;Rara-204;Rara-201;Rara-207;Rara-202,Rara;Rara;Rara;Rara;Rara,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,12,19401,ENSMUSG00000037992,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
6676,cg17017476,-0.000000418,0.000000531,-0.78766902,0.431492164,loss,ns,-0.000000261,0.000000902,-0.289784438,0.772174881,neg,ns,-0.000771321,0.000264144,-2.920078506,0.003755989,neg,ns,2.425275649,0.000012,0.00000908,1.323913353,0.186507209,pos,ns,0.98781154,Arap3,Arap3_Exon,18,37989984,37990033,37990032,37990033,50,+,CAGCCACCTCGTAGTCAGACAGGGTCTCGGTTACTGCTTCCTGCAGAGCG,"Exon (Arap3-208/Arap3, exon 10 of 33)",18,37972628,37998908,26281,2,Arap3-208,8875,Arap3-208;Arap3-201;Arap3-207;Arap3-209,Arap3;Arap3;Arap3;Arap3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,10,106952,ENSMUSG00000024451,conserved gene and region,18,37989897,37990066,170,*,170,12,0.652941177,0.674603175,0.070588235,0.000000101,CpGisland,TRUE,U11,Tr-P
9256,cg22368865,-0.00000197,0.00000733,-0.269410283,0.787793206,loss,ns,-0.00000361,0.0000124,-0.289737428,0.772210814,neg,ns,-0.009587887,0.003646887,-2.629060841,0.008988884,neg,ns,2.046294206,0.000223464,0.000125416,1.781783965,0.07576329,pos,ns,0.723480016,Cadm1,Cadm1_threeUTR,9,47857341,47857390,47857341,47857342,50,-,CGTTTGGACAAGGAAGGGAAAATGCCATTACTGTCAACTGAAATGTCCTA,3' UTR,9,47530244,47858115,327872,1,Cadm1-206,327097,Cadm1-204;Cadm1-206;Cadm1-203,Cadm1;Cadm1;Cadm1,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,77,54725,ENSMUSG00000032076,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16408,cg26764917,-0.0000197,0.00000493,-3.994401535,0.0000811,loss,ns,0.00000243,0.00000838,0.289677392,0.772256704,pos,ns,-0.001365244,0.00245529,-0.556041715,0.578583443,neg,ns,0.237633998,-0.000027,0.0000844,-0.319275959,0.7497323,neg,ns,0.922907347,Fbxw7,Fbxw7_fiveUTR,3,84903561,84903610,84903609,84903610,50,-,CTTTTGGAAATGAATCAGGAACTGCTCTCTGTGGGCAGCAAAAGACGACG,5' UTR,3,84815268,84979198,163931,1,Fbxw7-204,88293,Fbxw7-204;Fbxw7-205;Fbxw7-206;Fbxw7-203;Gm37240-203,Fbxw7;Fbxw7;Fbxw7;Fbxw7;Gm37240,0;0;87795;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,TRUE,FALSE,fiveUTR,4,10,50754,ENSMUSG00000028086,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16278,cg25301626,-0.0000213,0.00001,-2.122533795,0.034585403,loss,ns,0.00000494,0.0000171,0.28961386,0.772305268,pos,ns,0.007540084,0.004998983,1.508323589,0.132490174,pos,ns,0.87781633,-0.000351501,0.000171915,-2.044628211,0.041735895,neg,ns,0.159555875,Nfix,Nfix_Intron,8,84712616,84712665,84712664,84712665,50,-,AAGTTCATCTGGGTGTTACATCATGTCTGGTTGCTCCTGGAAACCAGACG,"Intron (Nfix-204/Nfix, intron 10 of 10)",8,84704712,84773396,68685,2,Nfix-204,60731,Nfix-207;Nfix-208;Nfix-204;Nfix-201;Nfix-202;Nfix-203;Nfix-206;Nfix-205,Nfix;Nfix;Nfix;Nfix;Nfix;Nfix;Nfix;Nfix,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,49,18032,ENSMUSG00000001911,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U5,En-Sd
23475,cg08733315,-0.000000859,0.00000036,-2.38584363,0.017640093,loss,ns,0.000000177,0.000000611,0.289585437,0.772326994,pos,ns,0.0000615,0.000179106,0.343610115,0.731372445,pos,ns,0.135861406,-0.0000118,0.00000616,-1.909835852,0.05707709,neg,ns,0.008834536,Bmf,Bmf_fiveUTR,2,118549628,118549677,118549628,118549629,50,+,CGGTATTGTTTCCAAAATACGCCTGCTCGGGGCATCCCGCAAACAGCTGA,Promoter (<=1kb),2,118532422,118549662,17241,2,Bmf-207,0,Bmf-201;Bmf-202;Bmf-208;Bmf-207;Bmf-203;Bmf-206;Bmf-204,Bmf;Bmf;Bmf;Bmf;Bmf;Bmf;Bmf,0;0;0;0;0;-2029;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,3,171543,ENSMUSG00000040093,conserved gene and region,2,118549382,118549699,318,*,318,37,0.720125786,0.92427337,0.116352201,4.57E-31,CpGisland,TRUE,U2,Pr-W
20284,cg20465666,0.0000691,0.00000754,9.155138202,7.54E-18,gain,yes,-0.00000371,0.0000128,-0.289551079,0.772353258,neg,ns,0.009786908,0.003754203,2.606920582,0.009577712,pos,ns,2.018738235,-0.00027379,0.000129107,-2.120651032,0.034744944,neg,ns,0.118242269,Hoxc5,Hoxc5_Exon,15,102983967,102984016,102983967,102983968,50,-,CGCTGGAACTGGAGAAGGAGTTTCTCTTCAATATGTATTTAACCAGGGAC,"Exon (Hoxc9-201/Hoxc9, exon 3 of 3)",15,102967443,103015676,48234,1,Hoxc5-202,16524,Hoxc5-202;Hoxc9-202;Hoxc9-201,Hoxc5;Hoxc9;Hoxc9,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,72,134,15424,ENSMUSG00000022485,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
15238,cg18481653,-0.00000786,0.00000673,-1.167722641,0.243815996,loss,ns,-0.00000331,0.0000114,-0.289495899,0.772395438,neg,ns,-0.00317306,0.003349251,-0.947393807,0.344176057,neg,ns,0.463219345,0.0000454,0.00011518,0.394554879,0.693442723,pos,ns,0.875213839,Gm18605,Gm18605_Intron,14,79879849,79879898,79879897,79879898,50,-,GGTACTTTATGAATATTCACTGAAGTGTAAACCTGCACATTGCTCATACG,"Intron (Gm6999-201/Gm6999-201, intron 1 of 4)",14,79947657,79948279,623,1,Gm18605-201,-67808,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,6,100417424,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25020,cg25615279,0.0000872,0.00000958,9.098616791,1.14E-17,gain,yes,0.00000471,0.0000163,0.289426471,0.772448511,pos,ns,0.008743179,0.004770244,1.832858035,0.06778262,pos,ns,1.168881647,0.000244057,0.000164048,1.487717017,0.137841996,pos,ns,0.24300567,Fgfr2,Fgfr2_Intron,7,131550655,131550704,131550703,131550704,50,+,TTATTGAGATCATTTTCTCTGGTATTTCCTTATTTTAAAGTTTGGACGCG,"Intron (Hmx2-202/Hmx2, intron 1 of 2)",7,130162451,133123350,2960900,2,Fgfr2-217,1572646,Fgfr2-217;Hmx2-202;Hmx2-201,Fgfr2;Hmx2;Hmx2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,58,79,14183,ENSMUSG00000030849,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
18932,cg13302551,0.0000942,0.0000171,5.504198904,7.78E-08,gain,yes,0.00000841,0.0000291,0.28937125,0.772490725,pos,ns,0.032772396,0.00851768,3.847573192,0.00014485,pos,ns,3.839081268,-0.00086855,0.000292922,-2.965120395,0.003260517,neg,ns,0.582850672,Dach1,Dach1_Intron,14,97960927,97960976,97960927,97960928,50,+,CGTTTCATTAGTGCAGACTCTAATTCAAAACTGTTGAAAATGAACTGCAC,"Intron (Dach1-201/Dach1, intron 3 of 10)",14,97786853,98169543,382691,2,Dach1-201,208567,Dach1-201;Dach1-202;Dach1-203,Dach1;Dach1;Dach1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,76,13134,ENSMUSG00000055639,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11256,cg23907260,-0.0000224,0.00000615,-3.646773038,0.000311377,loss,ns,-0.00000302,0.0000104,-0.289286366,0.772555615,neg,ns,-0.001666766,0.003058563,-0.544950708,0.586179245,neg,ns,0.231969563,0.000112396,0.000105184,1.068563803,0.286097636,pos,ns,0.93243021,Cd40lg,Cd40lg_Promoter,X,57212012,57212061,57212012,57212013,50,+,CGAAGCACATTTTCCAGGAAGTGTGGGCTGCAACGATTGTGCGCTCTTAA,Promoter (<=1kb),20,57212143,57224042,11900,1,Cd40lg-201,-82,Cd40lg-201,Cd40lg,-82,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,4,21947,ENSMUSG00000031132,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18853,cg22602409,-0.000000369,0.00000205,-0.179411415,0.857731877,loss,ns,0.00000101,0.00000349,0.289241297,0.772590069,pos,ns,0.001287861,0.001022357,1.259698662,0.208725639,pos,ns,0.680424201,0.00000514,0.0000352,0.146179401,0.883874777,pos,ns,0.936554767,Ppip5k2,Ppip5k2_Exon,1,97717474,97717523,97717474,97717475,50,-,CGATGAGTACGAGCATAATCCTGTAGGTTAGGTGCGCTTGAAGAACCCCC,"Exon (Ppip5k2-202/Ppip5k2, exon 27 of 31)",1,97706048,97770411,64364,2,Ppip5k2-201,52888,Ppip5k2-203;Ppip5k2-201;Ppip5k2-202;Ppip5k2-205;Ppip5k2-207;Ppip5k2-206,Ppip5k2;Ppip5k2;Ppip5k2;Ppip5k2;Ppip5k2;Ppip5k2,-2325;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,10,227399,ENSMUSG00000040648,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21510,cg17646216,-0.00000565,0.00000289,-1.955394601,0.051434686,loss,ns,-0.00000142,0.00000491,-0.289210777,0.772613402,neg,ns,-0.001708368,0.001438955,-1.187228164,0.23604657,neg,ns,0.627002306,-0.0000257,0.0000495,-0.519787979,0.603582312,neg,ns,0.888163341,Ip6k1,Ip6k1_threeUTR,9,108045832,108045881,108045832,108045833,50,+,CGCATGATTGACTTTGCACACAGCACATTCAAGGGCTTCCGGGATGACCC,3' UTR,9,108002501,108048782,46282,1,Ip6k1-201,43331,Gm20662-202;Gmppb-202;Gmppb-205;Gmppb-203;Gmppb-201;Gmppb-204;Ip6k1-201;Ip6k1-202;Ip6k1-210;Ip6k1-203;Ip6k1-204;Ip6k1-206;Ip6k1-209;Ip6k1-207,Gm20662;Gmppb;Gmppb;Gmppb;Gmppb;Gmppb;Ip6k1;Ip6k1;Ip6k1;Ip6k1;Ip6k1;Ip6k1;Ip6k1;Ip6k1,0;0;0;0;0;0;0;0;0;0;43161;21580;0;969,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,2,27399,ENSMUSG00000032594,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
882,cg17979116,-0.0000286,0.00000936,-3.057797465,0.002424013,loss,ns,-0.0000046,0.0000159,-0.289195265,0.77262526,neg,ns,0.002725063,0.004658825,0.584924892,0.559023706,pos,ns,0.252569775,-0.000315985,0.000160217,-1.972238618,0.049470934,neg,ns,0.862529862,Gm7099,Gm7099_Intergenic_upstream,12,9368803,9368852,9368803,9368804,50,+,CGACAATGGCTCATTGATTTATTGTGAGTGTAGCAATGGGTTTATAACGG,Distal Intergenic,12,9429547,9430100,554,1,Gm7099-201,-60695,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,5,633030,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15045,cg08089726,0.0000141,0.00000899,1.571741995,0.117030454,gain,ns,0.00000442,0.0000153,0.289093216,0.772703277,pos,ns,-0.000675249,0.004474753,-0.150901893,0.880151253,neg,ns,0.055442689,0.0000664,0.000153886,0.431581394,0.666345676,pos,ns,0.540539562,Ntrk3,Ntrk3_Intron,7,78620069,78620118,78620117,78620118,50,-,AGCATATTAATGACAATTAATGATTCGCTCTAATCCTCCCCAGCTCTCCG,"Intron (Ntrk3-210/Ntrk3, intron 1 of 3)",7,78516750,78623342,106593,2,Ntrk3-210,3224,Ntrk3-210;Ntrk3-212;Ntrk3-218;Ntrk3-219;Ntrk3-217,Ntrk3;Ntrk3;Ntrk3;Ntrk3;Ntrk3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,15,18213,ENSMUSG00000059146,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24551,cg18158719,0.00000472,0.00000503,0.937709367,0.349123768,gain,ns,-0.00000247,0.00000855,-0.289042939,0.772741715,neg,ns,0.004453109,0.002505387,1.77741376,0.076480547,pos,ns,1.116449014,-0.000207764,0.0000862,-2.411372162,0.01647379,neg,ns,0.897920745,Zmym4,Zmym4_Exon,4,126923145,126923194,126923193,126923194,50,-,AGGTTCTTCTTTAATTCTAATATTTGATGCAAAGGAATTCCCCAGTTCCG,Promoter (<=1kb),4,126861939,126923148,61210,2,Zmym4-204,0,Zmym4-204;Zmym4-201;Zmym4-206;Zmym4-203;Zmym4-209;Zmym4-202,Zmym4;Zmym4;Zmym4;Zmym4;Zmym4;Zmym4,0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,8,67785,ENSMUSG00000042446,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15908,cg23861251,0.0000113,0.0000052,2.168721978,0.030863872,gain,ns,-0.00000255,0.00000883,-0.289033111,0.772749229,neg,ns,-0.003899866,0.00258658,-1.507730414,0.132641936,neg,ns,0.877319148,0.0000174,0.000089,0.195312747,0.84527607,pos,ns,0.919816417,Hnf1b,Hnf1b_Exon,11,83861891,83861940,83861891,83861892,50,+,CGCGTCCCAGCAAATCTTGTACCAGGCCTACGATCGGCAAAAGAACCCCA,"Exon (Hnf1b-201/Hnf1b, exon 3 of 9)",11,83850855,83905819,54965,1,Hnf1b-201,11036,Hnf1b-201;Hnf1b-203;Hnf1b-205;Hnf1b-202,Hnf1b;Hnf1b;Hnf1b;Hnf1b,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,4,21410,ENSMUSG00000020679,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18226,cg02470738,-0.00000271,0.00000193,-1.399769039,0.162582413,loss,ns,0.000000949,0.00000328,0.288947442,0.772814726,pos,ns,0.001175168,0.000962306,1.221200738,0.222937969,pos,ns,0.651815961,-0.0000297,0.0000331,-0.897040789,0.370393254,neg,ns,0.057431874,Dipk2a,Dipk2a_Exon,9,94537223,94537272,94537271,94537272,50,+,AGCACCAGCGGCTCGGGGTTGAAGGCCAGGGTCAGCAGCAGCTGCATGCG,Promoter (<=1kb),9,94517864,94538081,20218,2,Dipk2a-201,809,Dipk2a-201,Dipk2a,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,68861,ENSMUSG00000045414,conserved gene and region,9,94537007,94538912,1906,*,1906,232,0.72455404,0.939578606,0.121720881,5.91E-197,CpGisland,TRUE,U1,Pr-A
26875,cg02281100,0.00000994,0.00000734,1.35352969,0.176872542,gain,ns,-0.0000036,0.0000125,-0.288716641,0.77299119,neg,ns,-0.003795349,0.00365487,-1.038436057,0.299876367,neg,ns,0.523057759,-0.0000352,0.000125691,-0.280064105,0.779615112,neg,ns,0.800488862,Cacna1e,Cacna1e_Exon,1,154416103,154416152,154416103,154416104,50,+,CGGAGGTGACATGAGAGTCAGCATTTCATACATCTCAGTGTAATGGATGC,"Exon (Cacna1e-203/Cacna1e, exon 39 of 47)",1,154390731,154726356,335626,2,Cacna1e-203,310204,Cacna1e-203;Cacna1e-201;Cacna1e-207;Cacna1e-208,Cacna1e;Cacna1e;Cacna1e;Cacna1e,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,19,12290,ENSMUSG00000004110,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27435,cg06233035,-0.0000197,0.00000655,-3.007712103,0.002847781,loss,ns,-0.00000321,0.0000111,-0.288638894,0.773050636,neg,ns,-0.001706607,0.003262151,-0.523153764,0.601240984,neg,ns,0.220951423,0.0000745,0.000112185,0.663767425,0.507332517,pos,ns,0.893329899,Pbx1,Pbx1_Intron,1,168164668,168164717,168164716,168164717,50,-,CCCAAGCAAGCCTGGCACTAAGAAACTCTCATTTGCAACCCAGAAATACG,"Intron (Pbx1-208/Pbx1, intron 7 of 7)",1,168119364,168432270,312907,2,Pbx1-208,267553,Pbx1-208;Pbx1-205;Pbx1-206;Pbx1-203;Pbx1-201,Pbx1;Pbx1;Pbx1;Pbx1;Pbx1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,84,18514,ENSMUSG00000052534,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13262,cg22073073,-0.00000137,0.00000179,-0.765196572,0.44473665,loss,ns,-0.000000878,0.00000304,-0.288550705,0.773118067,neg,ns,0.000291516,0.00089141,0.327028316,0.743867176,pos,ns,0.128504605,-0.0000281,0.0000307,-0.918232649,0.359210942,neg,ns,0.957141471,Ank3,Ank3_Exon,10,69932363,69932412,69932411,69932412,50,-,ACTGTTGAATGGTTAACTGTAAATACAACAGCCTCCGCTCCTTCAGTTCG,"Exon (Ank3-247/Ank3, exon 26 of 43)",10,69398996,70023957,624962,1,Ank3-247,533367,Ank3-247;Ank3-231;Ank3-210;Ank3-239;Ank3-240;Ank3-220;Ank3-201;Ank3-202;Ank3-203;Ank3-204;Ank3-206;Ank3-233;Ank3-221;Ank3-232;Ank3-226;Ank3-214;Ank3-228;Ank3-205;Ank3-215;Ank3-237;Ank3-242;Ank3-208;Ank3-227;Ank3-207;Ank3-230;Ank3-219,Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,13,11735,ENSMUSG00000069601,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15241,cg14036868,-0.00000319,0.00000178,-1.797188524,0.073278889,loss,ns,0.000000871,0.00000302,0.288375644,0.773251928,pos,ns,0.000811903,0.000884654,0.917763305,0.359456269,pos,ns,0.444353938,0.0000264,0.0000304,0.866348413,0.38696915,pos,ns,0.066026924,Atl2,Atl2_fiveUTR,17,79896018,79896067,79896066,79896067,50,+,CTCCGCCATCTTGTACCGATTTAAAATTAACTCCCCACTGACGTCAAACG,Promoter (<=1kb),17,79849319,79896051,46733,2,Atl2-205,0,Atl2-201;Atl2-202;Atl2-205;Atl2-206,Atl2;Atl2;Atl2;Atl2,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,7,56298,ENSMUSG00000059811,conserved gene but different region,17,79895393,79896218,826,*,826,122,0.766343826,1.022733731,0.147699758,4.72E-116,CpGisland,TRUE,NA,NRS
2826,cg16833583,-0.0000481,0.00000788,-6.10690546,3.04E-09,loss,yes,0.00000386,0.0000134,0.288364648,0.773260337,pos,ns,-0.01264576,0.003922549,-3.223862538,0.001399517,neg,ns,2.854021902,0.000327922,0.000134896,2.430921704,0.015627206,pos,ns,0.832741018,Comtd1,Comtd1_Intergenic_upstream,14,21904527,21904576,21904527,21904528,50,+,CGCAGATGGAAATTTCGAGCAATGAGAAAGATTAAAGTGAAACCCCACTC,Distal Intergenic,14,21845855,21848977,3123,2,Comtd1-202,-55550,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,13,69156,ENSMUSG00000021773,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2055,cg02595474,-0.00000199,0.000000954,-2.085931423,0.03780217,loss,ns,-0.000000468,0.00000162,-0.288312359,0.773300321,neg,ns,-0.0000406,0.000475061,-0.085511967,0.931909582,neg,ns,0.030626223,-0.0000015,0.0000163,-0.091873758,0.926857682,neg,ns,0.020836884,Cited2,Cited2_Exon,10,17724563,17724612,17724563,17724564,50,-,CGTCCCCGCTGCAATGCTGCCGCCCAATGTCATAGACACTGATTTCATCG,"Exon (Cited2-201/Cited2, exon 2 of 2)",10,17723218,17725674,2457,1,Cited2-201,1345,Cited2-201;Cited2-203;Cited2-202,Cited2;Cited2;Cited2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,11,17684,ENSMUSG00000039910,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
13894,cg20426932,0.00000361,0.00000189,1.913234675,0.056638998,gain,ns,-0.000000923,0.0000032,-0.288184281,0.773398263,neg,ns,0.001622779,0.000938189,1.72969395,0.084680339,pos,ns,1.072217412,-0.0000177,0.0000323,-0.549732437,0.582898726,neg,ns,0.037201595,Irx4,Irx4_Intergenic_downstream,13,73272082,73272131,73272082,73272083,50,-,CGTTACTTTTCATTAAGCGAGTCTGACAGCAGCATATTCAGGCTCGACAA,Downstream (2-3kb),13,73260497,73269608,9112,1,Irx4-201,11634,Irx4-202;Irx4-201,Irx4;Irx4,0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,6,7,50916,ENSMUSG00000021604,conserved gene and region,13,73271779,73272166,388,*,388,36,0.615979381,0.992750533,0.092783505,1.98E-26,CpGisland,TRUE,U3,Pr-B
14450,cg02749789.2,-0.000000843,0.000000431,-1.956708574,0.051279175,loss,ns,-0.000000211,0.000000732,-0.288091355,0.773469325,neg,ns,-0.000000251,0.000214312,-0.001169218,0.999067852,neg,ns,0.000405016,-0.000014,0.00000737,-1.903247684,0.057934341,neg,ns,0.009235792,Ywhae,Ywhae_fiveUTR,11,75732852,75732901,75732900,75732901,50,-,CCAGTTGCCAGGGAGCGGTTGCCATAGAGCTGAGCAGTTGTCCGCGTGCG,Promoter (<=1kb),11,75732869,75765845,32977,1,Ywhae-201,0,Ywhae-201;Ywhae-203;Ywhae-204;Ywhae-202,Ywhae;Ywhae;Ywhae;Ywhae,0;0;0;-247,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,9,9,22627,ENSMUSG00000020849,conserved gene but different region,11,75732561,75733672,1112,*,1112,119,0.701438849,0.881745794,0.107014389,6.96E-94,CpGisland,TRUE,NA,NRS
4815,cg16571209,0.0000883,0.0000217,4.063429452,0.0000613,gain,ns,-0.0000106,0.0000369,-0.288077073,0.773480247,neg,ns,0.054487409,0.010818807,5.036360369,0.000000807,pos,ns,6.093229664,-0.001855118,0.000372058,-4.986099884,0.00000103,neg,yes,0.395287132,Psme4,Psme4_Exon,11,30791099,30791148,30791099,30791100,50,+,CGACTTTATGGGAGAAAATTTAGCAAAGAAGATCATGTTCTTTTTATTAA,"Exon (Psme4-201/Psme4, exon 2 of 47)",11,30771726,30880361,108636,1,Psme4-201,19373,Psme4-201;Psme4-206,Psme4;Psme4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,103554,ENSMUSG00000040850,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6949,cg08634652,0.00000656,0.00000248,2.640110398,0.008707346,gain,ns,0.00000122,0.00000422,0.288009508,0.773531918,pos,ns,-0.00058806,0.001236105,-0.475736224,0.634597378,neg,ns,0.197501727,-0.000037,0.0000425,-0.870475933,0.38471392,neg,ns,0.943748891,Map4k4,Map4k4_Exon,1,40003758,40003807,40003806,40003807,50,+,TACAGTGGTCCCACCTGGCATCTCTCAAGAACAATGTTTCCCCTGTCTCG,"Exon (Map4k4-201/Map4k4, exon 17 of 31)",1,39900913,40026310,125398,1,Map4k4-201,102845,Map4k4-201;Map4k4-202;Map4k4-213;Map4k4-218;Map4k4-215;Map4k4-217;Map4k4-209;Map4k4-216;Map4k4-208;Map4k4-206;Map4k4-205;Map4k4-207,Map4k4;Map4k4;Map4k4;Map4k4;Map4k4;Map4k4;Map4k4;Map4k4;Map4k4;Map4k4;Map4k4;Map4k4,0;0;0;0;0;0;0;0;0;0;0;-3586,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,12,26921,ENSMUSG00000026074,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2320,cg23972738,0.00012443,0.000013,9.595478377,2.92E-19,gain,yes,-0.00000634,0.000022,-0.287898392,0.773616896,neg,ns,-0.008818905,0.006454104,-1.366402626,0.172802901,neg,ns,0.762448971,0.000857851,0.000221956,3.864956757,0.000135354,pos,ns,0.710880273,Meis1,Meis1_Exon,11,19014326,19014375,19014326,19014327,50,-,CGGGGGGTACAAGTAGCTAATTCACATTTCTCAAAAATCAGTGCTAAGAG,"Exon (Meis1-206/Meis1, exon 3 of 10)",11,18879817,19018985,139169,2,Meis1-206,4610,Meis1-206;Meis1-202;Meis1-209;Meis1-201;Meis1-203;Meis1-208;Meis1-207;Meis1-204;Meis1-205,Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,21,88,17268,ENSMUSG00000020160,mapped to different genes,11,19014258,19014327,70,*,70,9,0.628571429,1.448275862,0.128571429,3.78E-08,CpGisland,TRUE,NA,NRS
23849,cg06933499,0.000058,0.00000725,7.997017229,2.56E-14,gain,yes,-0.00000354,0.0000123,-0.28765588,0.77380237,neg,ns,0.005426563,0.003610248,1.50309975,0.133831333,pos,ns,0.873442197,0.000155904,0.000124156,1.255711865,0.210166074,pos,ns,0.217962158,En1,En1_Promoter,1,120600428,120600477,120600428,120600429,50,-,CGCACAAAAGCTACGCAGCTAAATAGGATATTGATAGTGTCCTAATTAGA,Promoter (1-2kb),1,120602418,120607992,5575,1,En1-201,-1990,En1-201,En1,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,23,36,13798,ENSMUSG00000058665,conserved gene and region,1,120600297,120600444,148,*,148,15,0.540540541,1.38836773,0.101351351,7.56E-12,CpGisland,TRUE,U13,Hc-P
22754,cg16839343,-0.00000526,0.00000381,-1.378798575,0.168950938,loss,ns,0.00000186,0.00000648,0.287570071,0.773868001,pos,ns,0.003210166,0.001897999,1.691342128,0.091776467,pos,ns,1.037268666,-0.000131864,0.0000653,-2.02021895,0.04422044,neg,ns,0.927804367,Sox6,Sox6_Intron,7,115919872,115919921,115919920,115919921,50,+,TGATTAAATGCATCTGATAACAAGCCACACATTGCTGAAATTACTTACCG,"Intron (Sox6-210/Sox6, intron 2 of 15)",7,115470872,116031047,560176,2,Sox6-210,111126,Sox6-210;Sox6-201;Sox6-202;Sox6-204;Sox6-206;Sox6-209;Sox6-214;Sox6-208,Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,37,57,20679,ENSMUSG00000051910,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13996,cg27257233,0.00000286,0.00000195,1.468271198,0.143044495,gain,ns,-0.000000953,0.00000331,-0.287560853,0.77387505,neg,ns,0.001237657,0.000970873,1.274787117,0.203339252,pos,ns,0.691778778,0.0000325,0.0000334,0.97311183,0.331256415,pos,ns,0.053540396,Gm13668,Gm13668_Intergenic_upstream,2,74129222,74129271,74129270,74129271,50,-,TCAAATGTGTTTAGTGCACCAAATCTCCTGGAGCCTTCAGCCAGGCAGCG,Distal Intergenic,2,73959669,73960669,1001,2,Gm13668-201,-168602,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,18,20,667729,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9994,cg07565103,0.000000186,0.00000255,0.072951074,0.941892097,gain,ns,-0.00000124,0.00000433,-0.287408543,0.773991548,neg,ns,-0.000161966,0.001267556,-0.127778527,0.898407092,neg,ns,0.046526828,-0.0000658,0.0000436,-1.509970341,0.132069565,neg,ns,0.944652217,Satb1,Satb1_Intron,17,51803602,51803651,51803602,51803603,50,+,CGCTGCAGAACATTCCTTTAAGACAGACAGATTTCATTTTGCGCATCAAA,"Intron (Satb1-208/Satb1, intron 4 of 10)",17,51736187,51832672,96486,2,Satb1-208,29021,Satb1-208;Satb1-213;Satb1-204;Satb1-214;Satb1-203;Satb1-211;Satb1-207;Satb1-206;Satb1-202;Satb1-201;Satb1-209,Satb1;Satb1;Satb1;Satb1;Satb1;Satb1;Satb1;Satb1;Satb1;Satb1;Satb1,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,28,36,20230,ENSMUSG00000023927,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21451,cg27301110,0.0000238,0.00000463,5.143561317,0.000000479,gain,yes,-0.00000226,0.00000786,-0.287149897,0.77418939,neg,ns,0.006733908,0.002302908,2.924089149,0.003709232,pos,ns,2.430716048,-0.000212728,0.0000792,-2.686071612,0.007619353,neg,ns,0.079111664,Cacng4,Cacng4_Promoter,11,107793767,107793816,107793767,107793768,50,-,CGGCCGGCCCCGCCCCAGGATGGCCAGTTCCCATAGCAATAGCACAGACA,Promoter (<=1kb),11,107732357,107794557,62201,2,Cacng4-201,741,Cacng4-201,Cacng4,0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,3,8,54377,ENSMUSG00000020723,conserved gene and region,11,107793647,107794919,1273,*,1273,155,0.743912019,0.885336743,0.121759623,7.27E-132,CpGisland,TRUE,U3,Pr-B
16705,cg22672691,-0.00000906,0.0000032,-2.82771585,0.004993203,loss,ns,0.00000156,0.00000544,0.287052108,0.774264194,pos,ns,-0.003273811,0.001594032,-2.053792732,0.04083423,neg,ns,1.388975628,0.0000863,0.0000548,1.575146793,0.116242516,pos,ns,0.925250658,Gpatch2l,Gpatch2l_Intergenic_upstream,12,86212837,86212886,86212885,86212886,50,+,GTCGCCTGCTTCTCAGCATTAACTTCTCTTTGATGTAATTTTTGCTTCCG,Distal Intergenic,12,86241858,86291784,49927,1,Gpatch2l-204,-28972,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,13,17,70373,ENSMUSG00000021254,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
24964,cg13492856,-0.00000583,0.0000031,-1.88038244,0.060993394,loss,ns,-0.00000151,0.00000527,-0.287039148,0.774274108,neg,ns,-0.000450381,0.001544285,-0.29164344,0.770754317,neg,ns,0.113084034,0.0000241,0.0000531,0.454591318,0.649721437,pos,ns,0.928106508,Nop56,Nop56_Exon,2,130276809,130276858,130276857,130276858,50,+,CCAAGATGAGCCAAGTAGCCCCCAGCCTGTCAGCCCTAATTGGGGAAGCG,"Exon (Nop56-202/Nop56, exon 7 of 12)",2,130274430,130279313,4884,1,Nop56-202,2379,Idh3b-201;Idh3b-204;Idh3b-205;Nop56-202;Nop56-212;Nop56-218;Nop56-204;Nop56-206;Nop56-205;Nop56-215;Nop56-210;Nop56-216;Nop56-219;Nop56-207;Nop56-217;Nop56-209;Nop56-213;Nop56-201;Nop56-211;Nop56-203;Nop56-214;Nop56-208,Idh3b;Idh3b;Idh3b;Nop56;Nop56;Nop56;Nop56;Nop56;Nop56;Nop56;Nop56;Nop56;Nop56;Nop56;Nop56;Nop56;Nop56;Nop56;Nop56;Nop56;Nop56;Nop56,0;0;0;0;0;0;0;2317;1978;1013;0;0;0;0;0;0;-231;-299;-360;-364;-457;-853,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,67134,ENSMUSG00000027405,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8477,cg22051383,0.00000582,0.00000141,4.131158857,0.0000465,gain,ns,-0.000000687,0.00000239,-0.286974383,0.774323652,neg,ns,0.001499084,0.00070135,2.137427819,0.033345343,pos,ns,1.476964806,-0.0000299,0.0000241,-1.239502372,0.216097038,neg,ns,0.024357092,Lbx1,Lbx1_Intergenic_downstream,19,45223741,45223790,45223789,45223790,50,+,AGTCTCGGGGCGTCTGGGTAGGCTATTAAGAGTAATTAGCATCTTTTGCG,Distal Intergenic,19,45232684,45235812,3129,2,Lbx1-201,12022,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,30,50,16814,ENSMUSG00000025216,mapped to different genes,19,45223712,45223906,195,*,195,15,0.564102564,0.969827586,0.076923077,4.54E-10,CpGisland,TRUE,U13,Hc-P
18923,cg12830057,0.0000101,0.00000312,3.252489719,0.001270103,gain,ns,-0.00000152,0.0000053,-0.28688531,0.774391792,neg,ns,-0.002904051,0.001551831,-1.871370482,0.062235457,neg,ns,1.205962114,0.0000908,0.0000534,1.700932138,0.089958524,pos,ns,0.897846737,Mitf,Mitf_Exon,6,97941093,97941142,97941141,97941142,50,-,AGCTCCTCCAGTATGACATCACGCATCTTGCTACGCCAGCAACTCATGCG,"Exon (Mitf-207/Mitf, exon 2 of 10)",6,97807052,98018593,211542,1,Mitf-207,134041,Mitf-207;Mitf-206;Mitf-202;Mitf-203;Mitf-204,Mitf;Mitf;Mitf;Mitf;Mitf,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,16,17342,ENSMUSG00000035158,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23557,cg12390411,-0.00000448,0.00000461,-0.971346814,0.332132882,loss,ns,0.00000224,0.00000783,0.286831557,0.774432914,pos,ns,0.006027184,0.002292991,2.62852525,0.009002736,pos,ns,2.045625472,-0.000308501,0.0000789,-3.912219412,0.000112427,neg,ns,0.869857399,Dyrk2,Dyrk2_Exon,10,118859958,118860007,118860006,118860007,50,-,ACAGTGCAGTAACGGGGATAACCCTTGGAGCTCACAAAATTTTTGGCTCG,"Exon (Dyrk2-201/Dyrk2, exon 3 of 3)",10,118855603,118869149,13547,2,Dyrk2-201,9142,Dyrk2-201;Dyrk2-202;Dyrk2-203,Dyrk2;Dyrk2;Dyrk2,0;10202;8292,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,69181,ENSMUSG00000028630,conserved gene and region,10,118859848,118860007,160,*,160,10,0.58125,0.754716981,0.0625,0.00000493,CpGisland,TRUE,U10,Tr-S
17379,cg10221825,0.0000528,0.00000425,12.41539261,5.28E-29,gain,yes,-0.00000207,0.00000723,-0.286670259,0.774556312,neg,ns,0.008758414,0.002116778,4.13761503,0.0000453,pos,ns,4.344316444,-0.000134413,0.0000728,-1.846431808,0.065782606,neg,ns,0.080288069,Gbx2,Gbx2_Intergenic_upstream,1,89941716,89941765,89941764,89941765,50,+,TGGGGGATTATAAATGTTCACGCAATCAAGTTCATTAGGACTTCAAATCG,Distal Intergenic,1,89927956,89931179,3224,2,Gbx2-201,-10537,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,13,14472,ENSMUSG00000034486,conserved gene but different region,1,89941736,89941859,124,*,124,9,0.572580645,0.9,0.072580645,0.00000547,CpGisland,TRUE,U13,Hc-P
775,cg04794813,-0.00000102,0.00000155,-0.65744425,0.511383148,loss,ns,-0.000000754,0.00000263,-0.286565226,0.774636669,neg,ns,0.001230885,0.000770449,1.597621104,0.111146101,pos,ns,0.954105768,-0.0000351,0.0000265,-1.323067414,0.186788021,neg,ns,0.961806554,Usp7,Usp7_Exon,16,8712066,8712115,8712066,8712067,50,-,CGTGGCATCACCATAATCTTCCATGGCAGATTTCGCACAAAACACGGAGG,"Exon (Usp7-207/Usp7, exon 4 of 32)",16,8689595,8792308,102714,2,Usp7-207,80193,Usp7-207;Usp7-206;Usp7-208;Usp7-210,Usp7;Usp7;Usp7;Usp7,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,10,252870,ENSMUSG00000022710,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7819,cg23027042,0.0000012,0.00000171,0.699362455,0.484849957,gain,ns,0.000000834,0.00000291,0.286502258,0.774684844,pos,ns,0.000702467,0.000852969,0.823554998,0.410825574,pos,ns,0.38634253,-0.0000268,0.0000293,-0.91225091,0.362345521,neg,ns,0.028682125,Eny2,Eny2_fiveUTR,15,44428229,44428278,44428277,44428278,50,-,CCGCGGTGATGGTGGTGAGCTATGCCCGTGGTCCTCAGGGCCGGGACCCG,Promoter (<=1kb),15,44428042,44433008,4967,1,Eny2-210,187,Eny2-210;Eny2-203;Eny2-204;Eny2-205;Eny2-201;Eny2-202;Eny2-206;Eny2-208;Eny2-209;Nudcd1-206;Nudcd1-201;Nudcd1-202;Nudcd1-204;Nudcd1-205;Nudcd1-207;Nudcd1-203,Eny2;Eny2;Eny2;Eny2;Eny2;Eny2;Eny2;Eny2;Eny2;Nudcd1;Nudcd1;Nudcd1;Nudcd1;Nudcd1;Nudcd1;Nudcd1,0;0;0;0;0;0;0;0;-4882;-356;0;-444;-341;-370;-421;-375,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,5,223527,ENSMUSG00000022338,conserved gene but different region,15,44428086,44428510,425,*,425,38,0.644705882,0.8608742,0.089411765,3.12E-27,CpGisland,TRUE,U1,Pr-A
4729,cg06887993,-0.0000155,0.00000531,-2.912049156,0.00385122,loss,ns,-0.00000258,0.00000902,-0.286478945,0.77470268,neg,ns,-0.003839082,0.002641228,-1.453521353,0.14709063,neg,ns,0.832414993,0.0000914,0.0000908,1.006357148,0.31502866,pos,ns,0.88322544,Mecom,Mecom_Intron,3,30322207,30322256,30322255,30322256,50,+,TGTCTCAATGCTTGATGCAGATCGAGTTTGTTCTTCTGATAGAGGTGTCG,"Intron (Mecom-212/Mecom, intron 1 of 15)",3,29951299,30509733,558435,2,Mecom-212,187477,Mecom-212;Mecom-213;Mecom-207;Mecom-208;Mecom-211;Mecom-209,Mecom;Mecom;Mecom;Mecom;Mecom;Mecom,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,80,14013,ENSMUSG00000027684,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15508,cg24619983,-0.00000544,0.00000189,-2.874973661,0.004320182,loss,ns,-0.00000092,0.00000321,-0.286447182,0.774726982,neg,ns,-0.001166962,0.000941111,-1.239983288,0.215919349,neg,ns,0.665708439,-0.0000113,0.0000324,-0.348207651,0.727920581,neg,ns,0.949280249,Slc8a1,Slc8a1_Intron,17,81444970,81445019,81445018,81445019,50,-,TTCCTGTGGGAACACAAGACAAAGGCAAAACAAATGGTTGGAGTCACACG,"Intron (Slc8a1-204/Slc8a1, intron 2 of 7)",17,81373105,81649608,276504,2,Slc8a1-204,204589,Gm11096-201;Slc8a1-204;Slc8a1-206;Slc8a1-202;Slc8a1-201;Slc8a1-203,Gm11096;Slc8a1;Slc8a1;Slc8a1;Slc8a1;Slc8a1,3207;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,3,20541,ENSMUSG00000054640,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4968,cg24087686,0.00000968,0.00000838,1.154274855,0.249276559,gain,ns,0.00000408,0.0000142,0.286341281,0.774808008,pos,ns,0.012806199,0.004172877,3.068913545,0.002338196,pos,ns,2.631119114,-0.000257881,0.000143505,-1.797017566,0.073306088,neg,ns,0.169509821,Rnf217,Rnf217_Exon,10,31608427,31608476,31608475,31608476,50,+,TTCTTGCAGCAAGGCAGGGGCTTGATGGGCTTGTCTTCCAGGCACACCCG,Promoter (<=1kb),10,31493193,31609184,115992,2,Rnf217-201,708,Rnf217-201,Rnf217,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,268291,ENSMUSG00000063760,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
26588,cg25671487,0.00000368,0.00000328,1.120767019,0.263254529,gain,ns,-0.0000016,0.00000557,-0.286252866,0.774875657,neg,ns,-0.001161291,0.00163322,-0.711044069,0.477591571,neg,ns,0.320943347,0.000107307,0.0000562,1.910519534,0.05698874,pos,ns,0.943610966,Casz1,Casz1_Exon,4,148941702,148941751,148941750,148941751,50,-,CATCTCTTTTATCCTCGCTTATGAATAAGGTAAGAGCCATCCATCACACG,"Exon (Casz1-201/Casz1, exon 13 of 16)",4,148804429,148945129,140701,1,Casz1-201,137273,Casz1-201;Casz1-202;Casz1-204,Casz1;Casz1;Casz1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
10528,cg21135598,0.00000114,0.00001,0.113470978,0.909730619,gain,ns,-0.00000487,0.000017,-0.285908337,0.775139284,neg,ns,0.002119628,0.00498805,0.424941148,0.671174376,pos,ns,0.173164632,-0.00000585,0.000171539,-0.034083567,0.972832448,neg,ns,0.873048547,Gm12468,Gm12468_Intergenic_downstream,4,54030464,54030513,54030512,54030513,50,+,CTTGCATGGGATTTTCATCACACCTTATCCCAGGGCAGTATATAGAGGCG,Distal Intergenic,4,53877925,53878328,404,1,Gm12468-201,152539,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,4,670124,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13566,cg17219472,-0.00000391,0.00000154,-2.535695488,0.011713406,loss,ns,0.000000749,0.00000262,0.285871609,0.775167389,pos,ns,0.000545002,0.000767175,0.710401781,0.4779891,pos,ns,0.320582007,-0.0000133,0.0000264,-0.502926573,0.615373014,neg,ns,0.062356162,Slc25a12,Slc25a12_fiveUTR,2,71367492,71367541,71367540,71367541,50,+,GCAGCAGAGAGTTGGAGTCACCTTGACCGCCATGCTGTGCTCGGAAGCCG,Promoter (<=1kb),2,71274690,71367533,92844,2,Slc25a12-207,0,Slc25a12-206;Slc25a12-207,Slc25a12;Slc25a12,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,3,78830,ENSMUSG00000027010,conserved gene and region,2,71367519,71367773,255,*,255,38,0.721568628,1.147017046,0.149019608,1.30E-36,CpGisland,TRUE,U1,Pr-A
1237,cg11496450,0.0000831,0.0000142,5.864614189,1.15E-08,gain,yes,0.00000688,0.0000241,0.285746906,0.775262817,pos,ns,0.029794352,0.007053378,4.224125227,0.0000316,pos,ns,4.500703979,-0.001082816,0.000242565,-4.46402168,0.0000113,neg,ns,0.091725271,Bcor,Bcor_Intron,X,12089681,12089730,12089681,12089682,50,-,CGTCGCCGTGTCCTCTGCTAGTGTCGGTCCTGTCAGTCGCACATGGCCTT,"Intron (Bcor-201/Bcor, intron 1 of 13)",20,12036743,12160355,123613,2,Bcor-201,70625,Bcor-201;Bcor-207;Bcor-205,Bcor;Bcor;Bcor,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,56,74,71458,ENSMUSG00000040363,conserved gene and region,X,12089488,12089992,505,*,505,45,0.693069307,0.751861042,0.089108911,4.51E-32,CpGisland,TRUE,U3,Pr-B
25789,cg07293320,0.00000652,0.00000258,2.522108163,0.012165997,gain,ns,0.00000125,0.00000439,0.285549052,0.775414229,pos,ns,0.004170796,0.001286207,3.242710756,0.001313007,pos,ns,2.881732961,-0.0000664,0.0000442,-1.500424037,0.134522365,neg,ns,0.074155909,Uncx,Uncx_Intergenic_downstream,5,139548661,139548710,139548661,139548662,50,-,CGGGCCGCTGGGCTCCTGCAGAGTTTTGATATGAAAGTAATTATTTTCCG,Downstream (<1kb),5,139543898,139545268,1371,1,Uncx-202,4812,Uncx-201;Uncx-202,Uncx;Uncx,0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,59,88,22255,ENSMUSG00000029546,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
25242,cg22863320,0.00000584,0.00000259,2.25391371,0.024899802,gain,ns,-0.00000126,0.0000044,-0.285509528,0.775444476,neg,ns,0.000940028,0.001289704,0.728871356,0.466630636,pos,ns,0.331026752,-0.000111266,0.0000444,-2.508667105,0.012628972,neg,ns,0.936791506,Cep85,Cep85_Exon,4,134148703,134148752,134148751,134148752,50,-,TCTGATTCCTTCTGGCATTTCTTTTTCAAATTATTGATATGTTTATCACG,"Exon (Cep85-201/Cep85, exon 8 of 14)",4,134129858,134187112,57255,2,Cep85-201,38360,Cep85-201;Cep85-202;Cep85-208,Cep85;Cep85;Cep85,0;0;5731,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,70012,ENSMUSG00000037443,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9924,cg25997380,-0.00000748,0.00000517,-1.444683626,0.149556762,loss,ns,-0.00000251,0.00000879,-0.285509374,0.775444594,neg,ns,0.003206748,0.002575264,1.245211165,0.21399456,pos,ns,0.669597268,-0.000237345,0.0000886,-2.67994755,0.007756877,neg,ns,0.945995442,Gm2361,Gm2361_Intergenic_upstream,15,51598049,51598098,51598097,51598098,50,+,TTTTTGAATTTTTATTTGTGGCATATATCCTGCTTATGCCAGCAGATGCG,Distal Intergenic,15,51548351,51548970,620,2,Gm2361-201,-49079,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,100039662,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25293,cg11725716,0.000013,0.0000292,0.445855716,0.656012702,gain,ns,-0.0000142,0.0000496,-0.285442946,0.775495433,neg,ns,0.082738171,0.014534832,5.692406486,0.000000029,pos,ns,7.536903078,-0.002834955,0.000499852,-5.671592913,3.24E-08,neg,yes,0.575090281,Lrp6,Lrp6_Exon,6,134479682,134479731,134479730,134479731,50,-,AAATGGCCCTGAATGATGGTGCGGTTTTGGCCACTGGTTTTGTTGGCACG,"Exon (Lrp6-201/Lrp6, exon 12 of 23)",6,134446476,134566913,120438,2,Lrp6-201,87182,Lrp6-201,Lrp6,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,11,16974,ENSMUSG00000030201,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2802,cg17616207,-0.00000961,0.00000929,-1.034459946,0.301727491,loss,ns,0.0000045,0.0000158,0.285434344,0.775502015,pos,ns,-0.00193519,0.004621379,-0.418747314,0.675690786,neg,ns,0.170252003,-0.000128755,0.000158929,-0.810143171,0.418479348,neg,ns,0.875962672,Ccdc178,Ccdc178_Intron,18,21845226,21845275,21845226,21845227,50,-,CGCCAGGATGGGGGGTTAATTTTCTCTAAATGCCTCAGCAGTTTTGTTCT,"Intron (Ccdc178-204/Ccdc178, intron 22 of 23)",18,21810893,22171442,360550,2,Ccdc178-204,326167,Ccdc178-204;Ccdc178-201;Ccdc178-202,Ccdc178;Ccdc178;Ccdc178,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,19,21,70950,ENSMUSG00000024306,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14660,cg19828959,0.000206193,0.0000144,14.35176311,3.61E-36,gain,yes,-0.00000697,0.0000244,-0.285419764,0.775513174,neg,ns,0.025398977,0.007150651,3.551981022,0.00044176,pos,ns,3.354813342,-0.000591609,0.00024591,-2.405791525,0.01672277,neg,ns,0.650639178,Rbfox2,Rbfox2_Exon,15,77105632,77105681,77105680,77105681,50,-,GCATCAGCACTATTCTCGAAAGTTACGAACCCGAATCCCTGCATGCAGCG,"Exon (Rbfox2-204/Rbfox2, exon 6 of 14)",15,77078990,77306928,227939,2,Rbfox2-204,201247,Rbfox2-204;Rbfox2-203;Rbfox2-202;Rbfox2-206;Rbfox2-208;Rbfox2-209;Rbfox2-201;Rbfox2-207;Rbfox2-212;Rbfox2-213,Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,20,93686,ENSMUSG00000033565,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26311,cg26513113,2.72E-08,0.00000869,0.00312513,0.997508521,gain,ns,0.00000422,0.0000148,0.285380912,0.775542909,pos,ns,-0.001895092,0.00432704,-0.437965056,0.661716621,neg,ns,0.179327957,-0.0000197,0.000148807,-0.132667905,0.894542099,neg,ns,0.719114622,Brinp3,Brinp3_Exon,1,146514727,146514776,146514727,146514728,50,+,CGAAGCAGAGCTGGTGCTGAATTGTTCTCTCTGATGGCTCTATGGGAGTG,"Exon (Brinp3-201/Brinp3, exon 2 of 8)",1,146494760,146902471,407712,1,Brinp3-201,19967,Brinp3-201;Brinp3-204;Brinp3-205;Brinp3-203;Brinp3-202,Brinp3;Brinp3;Brinp3;Brinp3;Brinp3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,5,215378,ENSMUSG00000035131,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26626,cg20916701,0.00000459,0.00000502,0.915725462,0.36052268,gain,ns,-0.00000243,0.00000852,-0.285376408,0.775546355,neg,ns,0.004425136,0.002496275,1.772695552,0.077261157,pos,ns,1.112038795,-0.000121443,0.0000858,-1.414653882,0.158173633,neg,ns,0.924897238,Pex14,Pex14_Intron,4,149044263,149044312,149044311,149044312,50,+,AGAGCAAAGTTCTGATGGGTTTAATGGTGCACTCAATGCAGTGCTTGGCG,"Intron (Pex14-201/Pex14, intron 2 of 8)",4,148960535,149099876,139342,2,Pex14-201,55564,Pex14-201;Pex14-202;Pex14-205;Pex14-203;Pex14-204,Pex14;Pex14;Pex14;Pex14;Pex14,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,41,48,56273,ENSMUSG00000028975,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5417,cg11232547,-0.00000257,0.00000169,-1.523591208,0.128630314,loss,ns,0.000000817,0.00000286,0.285351075,0.775565744,pos,ns,0.000528153,0.00083893,0.629555692,0.529449016,pos,ns,0.276175855,-0.0000212,0.0000289,-0.735903964,0.462345593,neg,ns,0.956613176,Nsd2,Nsd2_threeUTR,5,33885574,33885623,33885574,33885575,50,-,CGCCAGTACCCAGAGACCAAGATCATCAAGACAGATGGCAAAGGGTGGGG,3' UTR,5,33820725,33897966,77242,1,Nsd2-203,64849,Nsd2-203;Nsd2-202;Nsd2-207;Nsd2-208;Nsd2-201;Nsd2-209;Nsd2-214;Nsd2-212;Nsd2-206,Nsd2;Nsd2;Nsd2;Nsd2;Nsd2;Nsd2;Nsd2;Nsd2;Nsd2,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,2,107823,ENSMUSG00000057406,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4572,cg00915647,0.000000166,0.00000902,0.018400042,0.985331556,gain,ns,0.00000437,0.0000153,0.285196859,0.775683774,pos,ns,-0.006493972,0.004487258,-1.447202722,0.14885061,neg,ns,0.827249381,-0.0000162,0.000154316,-0.105148363,0.916326086,neg,ns,0.812924123,Ntm,Ntm_Intron,9,29827382,29827431,29827382,29827383,50,-,CGCCATCTCAGTAACTGCAGAATGGCAGTTGTAAAAAATCCCATTTGCCA,"Intron (Ntm-201/Ntm, intron 1 of 7)",9,28994750,29963129,968380,2,Ntm-201,135698,Ntm-201;Ntm-204;Ntm-210;Ntm-207,Ntm;Ntm;Ntm;Ntm,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,27,32,235106,ENSMUSG00000059974,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3699,cg07540032,-0.00000221,0.00000391,-0.56489323,0.572554934,loss,ns,0.00000189,0.00000664,0.285173177,0.7757019,pos,ns,0.002996178,0.001944921,1.540514237,0.124455165,pos,ns,0.904987074,-0.0000931,0.0000669,-1.392435964,0.164788378,neg,ns,0.925872021,Zfp574,Zfp574_Exon,7,25081955,25082004,25082003,25082004,50,+,GAAGTGTGTGGCAAGGCCTTTGCCATCTCCATGCGCCTGGCAGAACATCG,"Exon (Zfp574-202/Zfp574, exon 2 of 2)",7,25077205,25083492,6288,1,Zfp574-202,4750,Zfp574-204;Zfp574-203;Zfp574-202;Zfp574-201,Zfp574;Zfp574;Zfp574;Zfp574,9388;9309;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,232976,ENSMUSG00000045252,conserved gene and region,7,25081766,25082143,378,*,378,24,0.613756614,0.679245283,0.063492064,6.62E-14,CpGisland,TRUE,U10,Tr-S
670,cg19531041,-0.00000117,0.00000636,-0.184030748,0.854109654,loss,ns,0.00000308,0.0000108,0.285024485,0.775815708,pos,ns,-0.005918377,0.003164968,-1.869964483,0.062431121,neg,ns,1.204598867,0.00010478,0.000108843,0.962669904,0.336463511,pos,ns,0.779086196,Tfe3,Tfe3_threeUTR,X,7770778,7770827,7770778,7770779,50,-,CGAGGCAAAGGCCCTTTTGAAGGAACGGCAGAAGAAAGACAATCACAACC,3' UTR,20,7762658,7775202,12545,1,Tfe3-201,8120,Tfe3-213;Tfe3-209;Tfe3-201;Tfe3-202;Tfe3-206;Tfe3-211;Tfe3-212;Tfe3-207;Tfe3-214;Tfe3-204;Tfe3-203;Tfe3-205;Tfe3-208;Tfe3-210,Tfe3;Tfe3;Tfe3;Tfe3;Tfe3;Tfe3;Tfe3;Tfe3;Tfe3;Tfe3;Tfe3;Tfe3;Tfe3;Tfe3,8218;8192;0;0;0;0;0;0;6835;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,209446,ENSMUSG00000000134,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9329,cg25685565,0.0000165,0.00000967,1.701434735,0.089864058,gain,ns,-0.00000468,0.0000164,-0.284960476,0.775864702,neg,ns,0.010829263,0.004814794,2.249164294,0.025203751,pos,ns,1.598534815,-0.000358654,0.00016558,-2.166041839,0.03106997,neg,ns,0.578515709,Zdhhc9,Zdhhc9_Exon,X,48191217,48191266,48191265,48191266,50,-,TCACCCACACAGTTGTCACAGATGCTGCAATGGGAGGCCCGGGGAGGCCG,"Exon (Zdhhc9-201/Zdhhc9, exon 4 of 10)",20,48171969,48208687,36719,2,Zdhhc9-201,17421,Zdhhc9-201;Zdhhc9-202;Zdhhc9-203;Zdhhc9-204,Zdhhc9;Zdhhc9;Zdhhc9;Zdhhc9,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,208884,ENSMUSG00000036985,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20710,cg12628053,-0.00000136,0.000000784,-1.737171585,0.083350124,loss,ns,-0.00000038,0.00000133,-0.284922507,0.775893764,neg,ns,0.000697715,0.000390242,1.787904379,0.074768061,pos,ns,1.126283883,-0.0000144,0.0000134,-1.071086609,0.284963669,neg,ns,0.975573883,Gsc,Gsc_Intergenic_upstream,12,104567493,104567542,104567541,104567542,50,+,ACTTGCTGGGCGCCTCTGGAGTCTGGTATTAATAATAAATATTATTGCCG,Distal Intergenic,12,104471209,104473330,2122,2,Gsc-201,-94163,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,4,14836,ENSMUSG00000021095,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7308,cg03429120,-0.0000186,0.00000709,-2.625801334,0.009073481,loss,ns,-0.00000343,0.000012,-0.284846564,0.775951893,neg,ns,-0.002215128,0.003529186,-0.627659866,0.530688842,neg,ns,0.275160043,-0.000082,0.000121368,-0.675441454,0.499898845,neg,ns,0.846938815,Gm8176,Gm8176_Intergenic_upstream,1,42258049,42258098,42258097,42258098,50,+,GCTGTTGAAGCATAAATAAGCAGTTTGTAATCAGAAAGCTGACATCATCG,Distal Intergenic,1,42179290,42180388,1099,2,Gm8176-201,-77661,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,13,17,666582,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5884,cg08598988,0.0000394,0.0000117,3.373033986,0.000837786,gain,ns,0.00000565,0.0000198,0.284827138,0.775966763,pos,ns,-0.005391334,0.005810987,-0.927782842,0.354242017,neg,ns,0.450699928,0.000369095,0.000199839,1.846958747,0.065705961,pos,ns,0.785824444,Adcy5,Adcy5_Exon,16,35157073,35157122,35157073,35157074,50,+,CGCCTCTGAGGGCATCTGGTGGACCGTGTTCTTCATCTACACCATCTACA,"Exon (Adcy5-201/Adcy5, exon 1 of 21)",16,35154877,35305738,150862,1,Adcy5-201,2196,Adcy5-201,Adcy5,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,4,224129,ENSMUSG00000022840,conserved gene and region,16,35154562,35157175,2614,*,2614,280,0.716908952,0.833894451,0.107115532,6.18E-220,CpGisland,TRUE,NA,NRS
2304,cg05465967,-0.0000112,0.00000512,-2.190581045,0.029226545,loss,ns,0.00000247,0.00000869,0.284603617,0.776137864,pos,ns,0.00155261,0.00254652,0.609698676,0.542508054,pos,ns,0.26559381,-0.0000671,0.0000876,-0.766490299,0.443967906,neg,ns,0.088467385,Pip4k2a,Pip4k2a_Exon,2,18997909,18997958,18997957,18997958,50,+,CTTCACTTTCTGCGCTACGAAGTGCTTCTTCTTGGTCTTGGTCTTGCTCG,Promoter (<=1kb),2,18842255,18998126,155872,2,Pip4k2a-201,168,Pip4k2a-201,Pip4k2a,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,18718,ENSMUSG00000026737,conserved gene and region,2,18997651,18998524,874,*,874,105,0.721967963,0.922126206,0.1201373,7.58E-89,CpGisland,TRUE,U1,Pr-A
6594,cg09228164,0.0000284,0.00000755,3.757760431,0.00020481,gain,ns,0.00000365,0.0000128,0.284584289,0.776152659,pos,ns,-0.002837597,0.003755769,-0.755530213,0.450504582,neg,ns,0.346300787,0.000166969,0.000129161,1.292722365,0.197069748,pos,ns,0.046755653,Gm37013,Gm37013_Exon,18,37815736,37815785,37815784,37815785,50,-,GGTCGCTGGAGAGGTGAACCAAAGACACTTCCGTGTGGATTTGGACAGCG,"Exon (Pcdhgc4-201/Pcdhgc4, exon 1 of 4)",18,36969916,37833296,863381,1,Gm37013-201,845820,Gm37013-201;Gm37388-201;Gm42416-201;Pcdhga1-201;Pcdhga10-201;Pcdhga11-201;Pcdhga12-201;Pcdhga2-201;Pcdhga3-201;Pcdhga4-201;Pcdhga5-201;Pcdhga6-201;Pcdhga7-201;Pcdhga8-201;Pcdhga9-201;Pcdhgb1-201;Pcdhgb2-202;Pcdhgb4-202;Pcdhgb5-201;Pcdhgb6-201;Pcdhgb7-201;Pcdhgb8-201;Pcdhgc3-201;Pcdhgc3-202;Pcdhgc4-201;Pcdhgc4-203;Pcdhgc4-202;Pcdhgc5-201;Pcdhgc5-203;Pcdhgc5-204;Pcdhgc5-202,Gm37013;Gm37388;Gm42416;Pcdhga1;Pcdhga10;Pcdhga11;Pcdhga12;Pcdhga2;Pcdhga3;Pcdhga4;Pcdhga5;Pcdhga6;Pcdhga7;Pcdhga8;Pcdhga9;Pcdhgb1;Pcdhgb2;Pcdhgb4;Pcdhgb5;Pcdhgb6;Pcdhgb7;Pcdhgb8;Pcdhgc3;Pcdhgc3;Pcdhgc4;Pcdhgc4;Pcdhgc4;Pcdhgc5;Pcdhgc5;Pcdhgc5;Pcdhgc5,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;-3728;-3767;-3781;-3869,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,14,100384868,ENSMUSG00000103458,mapped to different genes,18,37815685,37815993,309,*,309,20,0.563106796,0.825320513,0.064724919,7.64E-12,CpGisland,TRUE,U3,Pr-B
1639,cg14992209,-0.00000508,0.00000134,-3.799100297,0.000174769,loss,ns,0.000000646,0.00000227,0.284532437,0.776192353,pos,ns,0.00075341,0.000665054,1.132855965,0.258150163,pos,ns,0.588127596,-0.0000238,0.0000229,-1.041753114,0.298337908,neg,ns,0.048426875,Hivep2,Hivep2_Intron,10,13967505,13967554,13967505,13967506,50,-,CGCCTTTATGTCTGTTCCCTGAAGTGGGTGGAACGTTGGCCCGTTCCGGG,"Intron (Hivep2-204/Hivep2, intron 1 of 12)",10,13966075,14150589,184515,1,Hivep2-204,1430,Hivep2-204;Hivep2-201;Hivep2-205;Hivep2-203;Hivep2-202;Hivep2-206,Hivep2;Hivep2;Hivep2;Hivep2;Hivep2;Hivep2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,9,15273,ENSMUSG00000015501,conserved gene but different region,10,13966596,13967658,1063,*,1063,102,0.67826905,0.874727722,0.095954845,2.58E-75,CpGisland,TRUE,U1,Pr-A
20600,cg04036479,0.00000278,0.0000051,0.545264014,0.585964037,gain,ns,0.00000246,0.00000866,0.284382726,0.776306961,pos,ns,-0.004056033,0.002537768,-1.598267726,0.111002135,neg,ns,0.954668669,0.0000224,0.0000873,0.256920303,0.797410732,pos,ns,0.78191831,Wnt3,Wnt3_Exon,11,103812513,103812562,103812561,103812562,50,+,TGGTCTACTACGAGAACTCCCCCAACTTTTGTGAGCCCAACCCAGAGACG,"Exon (Wnt3-201/Wnt3, exon 4 of 5)",11,103774150,103817957,43808,1,Wnt3-201,38363,Wnt3-201,Wnt3,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,9,22415,ENSMUSG00000000125,conserved gene and region,11,103812319,103812689,371,*,371,25,0.614555256,0.714560863,0.067385445,4.55E-15,CpGisland,TRUE,U13,Hc-P
26525,cg02565841,0.0000454,0.00000895,5.073912029,0.000000673,gain,yes,-0.00000432,0.0000152,-0.284242758,0.776414117,neg,ns,0.012796333,0.004454509,2.872669939,0.004350971,pos,ns,2.361413781,-0.000334228,0.00015319,-2.18178771,0.029875944,neg,ns,0.573968146,Casz1,Casz1_Intron,4,148881352,148881401,148881352,148881353,50,-,CGCTGGGGAGATTAGAATTGACATCCTGGGAGCACATTCCTGGCTGGGCA,"Intron (Casz1-201/Casz1, intron 2 of 15)",4,148804429,148945129,140701,1,Casz1-201,76923,Casz1-201;Casz1-202,Casz1;Casz1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,94,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19743,cg23259541,-0.00000943,0.00000622,-1.516520796,0.130406751,loss,ns,0.000003,0.0000106,0.284235425,0.776419731,pos,ns,-0.001713459,0.003095988,-0.553445019,0.580357648,neg,ns,0.236304288,-0.000200627,0.000106471,-1.884339572,0.060454562,neg,ns,0.736338785,Scn8a,Scn8a_Exon,15,101013316,101013365,101013364,101013365,50,+,CCTGGGCAACCTGACACTGGTGCTGGCCATTATTGTCTTCATCTTTGCCG,"Exon (Scn8a-201/Scn8a, exon 16 of 27)",15,100870683,101045929,175247,1,Scn8a-201,142633,Scn8a-212;Scn8a-201;Scn8a-204;Scn8a-213;Scn8a-203;Scn8a-205;Scn8a-208;Scn8a-209,Scn8a;Scn8a;Scn8a;Scn8a;Scn8a;Scn8a;Scn8a;Scn8a,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,18,24,20273,ENSMUSG00000023033,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21342,cg17424851,-0.00000351,0.00000281,-1.2487036,0.21271567,loss,ns,0.00000136,0.00000478,0.284197693,0.776448618,pos,ns,-0.002657493,0.001399719,-1.898590626,0.058546782,neg,ns,1.232496974,0.0000682,0.0000481,1.4162491,0.157706591,pos,ns,0.932056076,Kcnc4,Kcnc4_threeUTR,3,107439412,107439461,107439460,107439461,50,-,TCTCTGTGTTTAAAGAGCACAGGTGTGAGACACTGGGACGCACGCTTTCG,3' UTR,3,107438303,107459552,21250,2,Kcnc4-201,20091,Kcnc4-201;Kcnc4-202,Kcnc4;Kcnc4,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,12,99738,ENSMUSG00000027895,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26524,cg15331238,-0.0000171,0.000011,-1.547264724,0.122819661,loss,ns,0.00000532,0.0000187,0.284165466,0.776473291,pos,ns,0.020442643,0.005488157,3.724865158,0.000232131,pos,ns,3.634267173,-0.000738603,0.000188737,-3.913391253,0.000111908,neg,ns,0.740446542,Casz1,Casz1_Intron,4,148881274,148881323,148881322,148881323,50,+,GCCTGATTAGAGAGTCTGCCCTGGATTTCTGAAACTTTGGGATGTTGTCG,"Intron (Casz1-201/Casz1, intron 2 of 15)",4,148804429,148945129,140701,1,Casz1-201,76845,Casz1-201;Casz1-202,Casz1;Casz1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,94,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1840,cg11381764,-0.00000144,0.00000248,-0.582725494,0.560501728,loss,ns,0.00000119,0.00000421,0.283851869,0.776713391,pos,ns,-0.000358575,0.001232034,-0.291043218,0.771212895,neg,ns,0.112825718,-0.0000613,0.0000424,-1.446558166,0.149031048,neg,ns,0.935256731,Gli3,Gli3_Intron,13,15543710,15543759,15543710,15543711,50,+,CGGTTAAGGGATTGAGCTATATGCACTATTATTGCAAGAAGTATTCCGAA,"Intron (Gli3-202/Gli3, intron 2 of 11)",13,15463235,15715091,251857,1,Gli3-202,80475,Gli3-202;Gli3-204;Gli3-203;Gli3-201,Gli3;Gli3;Gli3;Gli3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,19,21,14634,ENSMUSG00000021318,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18661,cg04100724,-0.00000487,0.00000163,-2.981166833,0.003098983,loss,ns,-0.000000788,0.00000278,-0.283802996,0.776750811,neg,ns,0.000238012,0.000813751,0.292487728,0.770109405,pos,ns,0.113447573,0.00000216,0.000028,0.077350792,0.938394386,pos,ns,0.067944117,Btg1,Btg1_Exon,10,96617427,96617476,96617427,96617428,50,+,CGACAGCTGCAGACCTTCAGCCAGAGCCTGCAGGAGCTGCTGGCAGGTGA,Promoter (<=1kb),10,96617006,96622809,5804,1,Btg1-201,421,Btg1-201;Btg1-202,Btg1;Btg1,0;-78,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,2,12226,ENSMUSG00000036478,mapped to different genes,10,96617204,96617428,225,*,225,33,0.755555556,1.060714286,0.146666667,1.46E-31,CpGisland,TRUE,U1,Pr-A
17289,cg15189773,-0.00000544,0.00000188,-2.899043532,0.004010157,loss,ns,0.000000905,0.00000319,0.283801496,0.776751959,pos,ns,0.000465357,0.000933998,0.498241965,0.618666801,pos,ns,0.208543189,0.0000186,0.0000321,0.579724212,0.562521687,pos,ns,0.934290661,Ankfn1,Ankfn1_Exon,11,89421245,89421294,89421293,89421294,50,-,CACCTCCTGTGTGTAGAGGCGGAAGTTCCTTGCCTGCAGAGGGACACGCG,"Exon (Ankfn1-208/Ankfn1, exon 19 of 22)",11,89391238,89841266,450029,2,Ankfn1-208,419972,Ankfn1-201;Ankfn1-207;Ankfn1-208;Ankfn1-206;Ankfn1-202;Ankfn1-203,Ankfn1;Ankfn1;Ankfn1;Ankfn1;Ankfn1;Ankfn1,-2297;-2297;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,15,382543,ENSMUSG00000047773,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5483,cg08756526,-0.000000846,0.00000151,-0.559743357,0.576058717,loss,ns,0.000000729,0.00000257,0.283737753,0.776800767,pos,ns,0.001291304,0.000752524,1.715964717,0.087167569,pos,ns,1.059645066,-0.0000353,0.0000259,-1.365480116,0.173092182,neg,ns,0.960844047,Mvb12b,Mvb12b_Intron,2,34065822,34065871,34065822,34065823,50,-,CGGAGTACATCTCGCGCAAATTGCAAAGTTGTGAATATGTTCTCAGATAA,"Intron (C230014O12Rik-201/C230014O12Rik-201, intron 1 of 3)",2,33729953,33887946,157994,2,Mvb12b-201,-177925,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,28,47,72543,ENSMUSG00000038740,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25268,cg17258599,-0.0000189,0.00000838,-2.258099239,0.024634589,loss,ns,0.00000404,0.0000142,0.283662317,0.776858528,pos,ns,0.004042823,0.004172667,0.968882121,0.333359309,pos,ns,0.477087412,-0.000318746,0.000143498,-2.221261988,0.027055392,neg,ns,0.621268224,Pdik1l,Pdik1l_Exon,4,134278914,134278963,134278914,134278915,50,-,CGGTGGATGATCTGGTTTTTATGCAAGAAAGCCAGGGCACTGCTCAGCTG,"Exon (Pdik1l-203/Pdik1l, exon 4 of 4)",4,134275002,134287239,12238,2,Pdik1l-203,8276,Pdik1l-203;Pdik1l-201;Pdik1l-202;Pdik1l-206;Pdik1l-204;Pdik1l-205,Pdik1l;Pdik1l;Pdik1l;Pdik1l;Pdik1l;Pdik1l,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,8,230809,ENSMUSG00000050890,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9826,cg14286304,-0.00000882,0.00000798,-1.106178582,0.269506916,loss,ns,0.00000384,0.0000136,0.28359918,0.776906873,pos,ns,-0.005316689,0.003969896,-1.339251366,0.181469949,neg,ns,0.741195283,0.000101587,0.000136524,0.744095227,0.457382504,pos,ns,0.764468251,Gm48777,Gm48777_Intron,12,51000465,51000514,51000465,51000466,50,-,CGTGTTATGAAGCAAATGATTAATTAAAGCAAATTAAATTCTGGCAGCTC,"Intron (Gm40421-201/Gm40421-201, intron 2 of 5)",12,50895099,50895471,373,2,Gm48777-201,-105043,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,10,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11871,cg01024113,-0.00000332,0.000000978,-3.395624307,0.000773896,loss,ns,-0.000000471,0.00000166,-0.283472313,0.777004019,neg,ns,0.0000379,0.00048695,0.077797997,0.93803893,pos,ns,0.027779137,-0.0000206,0.0000167,-1.229826926,0.219694442,neg,ns,0.020527869,Tle3,Tle3_Exon,9,61372181,61372230,61372181,61372182,50,+,CGAAAGTCACCAGCGGGTAGGGCCTGATTGCTACTTTTCATGCATAGTTT,Promoter (<=1kb),9,61372366,61418497,46132,1,Tle3-218,-136,Tle3-218;Tle3-204;Tle3-201;Tle3-215;Tle3-212;Tle3-208;Tle3-207;Tle3-217;Tle3-202;Tle3-206;Tle3-210;Tle3-205;Tle3-211;Tle3-209;Tle3-213,Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,30,21887,ENSMUSG00000032280,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21883,cg18753841,0.0000265,0.0000106,2.507503656,0.012669775,gain,ns,-0.00000509,0.000018,-0.283466835,0.777008214,neg,ns,0.027878982,0.005260214,5.299971086,0.00000022,pos,ns,6.656937055,-0.001134037,0.000180898,-6.268917052,1.22E-09,neg,yes,0.248216304,Trim66,Trim66_Intron,7,109494038,109494087,109494086,109494087,50,+,GTCCTTATCCTGTGACGTCACAGTCAGTTGCCATAGTGACCAATTGTCCG,"Intron (Trim66-201/Trim66, intron 1 of 19)",7,109453776,109508134,54359,2,Trim66-201,14047,Trim66-202;Trim66-201;Trim66-203,Trim66;Trim66;Trim66,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,4,330627,ENSMUSG00000031026,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22509,cg04141390,-0.000000397,0.000000544,-0.729237601,0.466406934,loss,ns,0.000000262,0.000000924,0.283422031,0.777042524,pos,ns,-0.000288892,0.000270669,-1.0673272,0.286654589,neg,ns,0.542641101,0.0000103,0.00000931,1.102376552,0.271153094,pos,ns,0.98740691,Rps4l-ps,Rps4l-ps_Intergenic_downstream,7,114897052,114897101,114897052,114897053,50,+,CGATCGACGATGTTAATTGCACTGATGGCTCGTTATTTGGGGAATTGCCA,Distal Intergenic,7,114926959,114927726,768,2,Rps4l-ps-201,30625,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,13,19,627967,NA,mapped to different genes,7,114896968,114897083,116,*,116,9,0.50862069,1.202764977,0.077586207,0.00000318,CpGisland,TRUE,U15,NS
12911,cg22582760,-0.0000274,0.000012,-2.279160943,0.023337027,loss,ns,0.00000578,0.0000204,0.283345538,0.777101099,pos,ns,-0.012944654,0.005976762,-2.165830667,0.031086259,neg,ns,1.507431533,0.000290205,0.00020554,1.411911724,0.15897893,pos,ns,0.239355402,Arid5b,Arid5b_Intron,10,68277296,68277345,68277296,68277297,50,+,CGCCCGGGCAGATCTGCAAGTTATTTGAATGTATTATTCCAGTACCTGTC,"Intron (Arid5b-204/Arid5b, intron 2 of 9)",10,68092520,68278740,186221,2,Arid5b-204,1395,Arid5b-204;Arid5b-201;Arid5b-202,Arid5b;Arid5b;Arid5b,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,33,71371,ENSMUSG00000019947,conserved gene and region,10,68277171,68277311,141,*,141,14,0.581560284,1.2,0.09929078,5.96E-11,CpGisland,TRUE,U1,Pr-A
13058,cg17325863,0.0000663,0.0000168,3.935451468,0.000102556,gain,ns,0.00000811,0.0000286,0.283253404,0.777171654,pos,ns,0.01696912,0.00838437,2.023899292,0.043837983,pos,ns,1.358149439,-0.000505304,0.000288338,-1.752472999,0.080681123,neg,ns,0.277161291,Tcf4,Tcf4_Intron,18,69346902,69346951,69346950,69346951,50,+,TTCATTTCTCGCTCTACCTCCTGTTGCATAAAATGATGCGCTGAAGAGCG,"Intron (Tcf4-259/Tcf4, intron 1 of 6)",18,69343356,69564082,220727,1,Tcf4-259,3546,Tcf4-259;Tcf4-201;Tcf4-207;Tcf4-210;Tcf4-240;Tcf4-254;Tcf4-246;Tcf4-206;Tcf4-202;Tcf4-257;Tcf4-232;Tcf4-215;Tcf4-248;Tcf4-231;Tcf4-205;Tcf4-253;Tcf4-244;Tcf4-233;Tcf4-238;Tcf4-245;Tcf4-249;Tcf4-219;Tcf4-235;Tcf4-227,Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,42,66,21413,ENSMUSG00000053477,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
13133,cg17563106,-0.0000119,0.00000958,-1.23980296,0.215985964,loss,ns,0.00000461,0.0000163,0.283158705,0.777244175,pos,ns,-0.001292507,0.004769222,-0.271010049,0.786563668,neg,ns,0.104266118,-0.000248157,0.000164013,-1.513028867,0.131291124,neg,ns,0.715371746,Ikzf2,Ikzf2_Exon,1,69548688,69548737,69548688,69548689,50,-,CGCTGCTTGTAGCTTCGTCCACAGTAGTTGCACTTGTGAGGTTTACCCAC,"Exon (Ikzf2-201/Ikzf2, exon 6 of 8)",1,69531214,69685821,154608,2,Ikzf2-201,137084,Ikzf2-201;Ikzf2-207;Ikzf2-202;Ikzf2-204;Ikzf2-208;Ikzf2-209,Ikzf2;Ikzf2;Ikzf2;Ikzf2;Ikzf2;Ikzf2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,14,22779,ENSMUSG00000025997,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16112,cg12287705,0.00000196,0.00000399,0.49147617,0.623437493,gain,ns,0.00000192,0.00000677,0.282972489,0.777386787,pos,ns,0.003795567,0.00198403,1.913059257,0.05666154,pos,ns,1.246711628,-0.000158121,0.0000682,-2.317446946,0.021130449,neg,ns,0.905440975,Dmd,Dmd_Exon,X,84425739,84425788,84425739,84425740,50,-,CGGATGTGGAAGAGATTTTGTCTAAAGGGCAGCATTTGTACAAGGAAAAA,"Exon (Dmd-203/Dmd, exon 49 of 79)",20,82948903,85206141,2257239,1,Dmd-203,1476836,Dmd-203;Dmd-215,Dmd;Dmd,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,20,28,13405,ENSMUSG00000045103,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22911,cg03378541,-0.000000169,0.00000286,-0.058964977,0.953017996,loss,ns,0.00000137,0.00000486,0.282889431,0.777450398,pos,ns,-0.000402705,0.00142364,-0.282870126,0.777465183,neg,ns,0.109319051,0.0000104,0.000049,0.212551477,0.831816517,pos,ns,0.942262452,Gm5357,Gm5357_Intergenic_upstream,8,116124399,116124448,116124447,116124448,50,-,CAATTATGATTTTATTGCACCCACTGTGCTGACGATTAATGCTGAGTGCG,Distal Intergenic,8,116489186,116491109,1924,1,Gm5357-201,-364787,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,15,15,384868,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12259,cg08564040,0.0000224,0.0000114,1.962646484,0.050581334,gain,ns,-0.00000548,0.0000194,-0.282699896,0.777595562,neg,ns,0.005132648,0.005680331,0.903582489,0.366918438,pos,ns,0.435430464,-0.000264187,0.000195346,-1.352404255,0.177231719,neg,ns,0.791629491,Adam23,Adam23_Exon,1,63585419,63585468,63585467,63585468,50,-,CAGCTATTGTCCTTGGGGGCACAGGCTGGGGATTTAAGTAAGCAACGCCG,"Exon (Adam23-201/Adam23, exon 25 of 26)",1,63445895,63596276,150382,1,Adam23-201,139524,Adam23-201;Adam23-204;Adam23-205;Adam23-202;Adam23-211;Adam23-207,Adam23;Adam23;Adam23;Adam23;Adam23;Adam23,0;0;0;0;6627;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,23792,ENSMUSG00000025964,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17407,cg08848602,-0.00000149,0.000000745,-1.995834727,0.046826564,loss,ns,0.000000358,0.00000127,0.282689262,0.777603707,pos,ns,0.0000239,0.000370789,0.064538442,0.948583096,pos,ns,0.022924619,-0.00000391,0.0000128,-0.30661431,0.7593428,neg,ns,0.026759597,Picalm,Picalm_Exon,7,90130661,90130710,90130661,90130662,50,-,CGACCCACGAGATCATGGGGCCCAAGAAAAAGCACCTGGACTGTGAGTGA,Promoter (<=1kb),7,90130213,90208932,78720,1,Picalm-205,448,Picalm-205;Picalm-206;Picalm-215;Picalm-207;Picalm-208;Picalm-212;Picalm-204;Picalm-213;Picalm-201;Picalm-211,Picalm;Picalm;Picalm;Picalm;Picalm;Picalm;Picalm;Picalm;Picalm;Picalm,0;0;0;0;0;0;0;0;0;-935,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,4,233489,ENSMUSG00000039361,conserved gene but different region,7,90129751,90130669,919,*,919,104,0.738846572,0.838915807,0.113166485,5.97E-85,CpGisland,TRUE,U1,Pr-A
17228,cg25574114,0.00000357,0.00000244,1.462957706,0.144492072,gain,ns,0.00000117,0.00000415,0.282444556,0.777791139,pos,ns,0.00086464,0.001214671,0.711830832,0.477104871,pos,ns,0.321386149,0.0000243,0.0000418,0.582343665,0.560758514,pos,ns,0.060393595,Nog,Nog_Intergenic_downstream,11,89299052,89299101,89299052,89299053,50,+,CGACATTAGGAATATTTTAAAAGCCATCATCCATCGAGCATGTCTCCCAG,Downstream (1-2kb),11,89300638,89302332,1695,2,Nog-201,3231,Nog-201,Nog,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,16,36,18121,ENSMUSG00000048616,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
9962,cg18441511,-0.0000151,0.00000789,-1.910683565,0.05696756,loss,ns,-0.00000378,0.0000134,-0.28235024,0.777863383,neg,ns,-0.002399828,0.003926691,-0.611157826,0.541542974,neg,ns,0.266367075,-0.0000389,0.000135039,-0.288228784,0.773364231,neg,ns,0.864986388,Satb1,Satb1_Intron,17,51760582,51760631,51760630,51760631,50,-,GGTGTGACCTTGTGCGTGCCTGCGTGTGTAAATAAAATTAATTACAAGCG,"Intron (Satb1-208/Satb1, intron 9 of 10)",17,51736187,51832672,96486,2,Satb1-208,72041,Satb1-208;Satb1-213;Satb1-204;Satb1-214;Satb1-203;Satb1-211;Satb1-207,Satb1;Satb1;Satb1;Satb1;Satb1;Satb1;Satb1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,28,36,20230,ENSMUSG00000023927,conserved gene and region,17,51760544,51760676,133,*,133,9,0.541353384,0.93515625,0.067669173,0.00000959,CpGisland,TRUE,U15,NS
7943,cg10614259,-0.000014,0.00000671,-2.090927167,0.037348581,loss,ns,-0.00000322,0.0000114,-0.282326248,0.777881761,neg,ns,-0.003203898,0.003340155,-0.959206416,0.338202278,neg,ns,0.470823472,-0.0000169,0.000114868,-0.147070762,0.883171768,neg,ns,0.936232086,Hif1an,Hif1an_Exon,19,44646811,44646860,44646811,44646812,50,+,CGTGGATTTGCATATTGAATTAAAATTAAGAGCTAATTATGCAAATAAAT,"Exon (Gm35460-201/Gm35460-201, exon 7 of 7)",19,44562850,44576274,13425,1,Hif1an-201,83961,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,31,319594,ENSMUSG00000036450,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
225,cg14342898,-5.74E-08,0.000000224,-0.256530132,0.797711678,loss,ns,-0.000000107,0.00000038,-0.28231151,0.77789305,neg,ns,-0.000237133,0.000111346,-2.129689107,0.033984805,neg,ns,1.468715223,0.00000507,0.00000383,1.325258233,0.186061419,pos,ns,0.994164628,Gm21992,Gm21992_threeUTR,19,4801630,4801679,4801678,4801679,50,+,GAGCCGCCCGCAGGTAATCATTATAGGAGCCCGAATAGCGTGCGTAATCG,3' UTR,19,4742913,4811612,68700,2,Gm21992-203,9933,Gm21992-203;Gm21992-206;Gm21992-204;Gm21992-201;Gm21992-205;Gm21992-202;Rbm14-201;Rbm14-202;Rbm14-203,Gm21992;Gm21992;Gm21992;Gm21992;Gm21992;Gm21992;Rbm14;Rbm14;Rbm14,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,21,48,102902673,ENSMUSG00000096370,mapped to different genes,19,4801605,4801812,208,*,208,24,0.586538462,1.371428571,0.115384615,3.42E-20,CpGisland,TRUE,U10,Tr-S
2868,cg11918226,-0.00000279,0.00000175,-1.593570081,0.112051408,loss,ns,-0.000000839,0.00000297,-0.282165359,0.778005004,neg,ns,-0.000916245,0.000871455,-1.051397183,0.293895095,neg,ns,0.531807662,-0.0000361,0.00003,-1.20293224,0.229920458,neg,ns,0.956028651,Ccdc178,Ccdc178_Intron,18,21996274,21996323,21996322,21996323,50,+,TGTTTCACTTCAATAACTCTTTTAAAGTTGTTGCGCCAAGATGCCTGGCG,"Intron (Ccdc178-204/Ccdc178, intron 21 of 23)",18,21810893,22171442,360550,2,Ccdc178-204,175119,Ccdc178-204;Ccdc178-201;Ccdc178-202,Ccdc178;Ccdc178;Ccdc178,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,19,21,70950,ENSMUSG00000024306,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15147,cg24753806,0.0000267,0.00000724,3.683014757,0.00027187,gain,ns,0.00000347,0.0000123,0.282156304,0.778011941,pos,ns,0.001110904,0.003602996,0.30832786,0.75803995,pos,ns,0.120307906,0.0000234,0.000123907,0.188605235,0.850525639,pos,ns,0.133591384,Cerkl,Cerkl_Promoter,2,79455799,79455848,79455847,79455848,50,+,CAGCCCATTGAAAGGGCCGCCCGCTCTTTATTGGGGCTTTTCAAAGTTCG,Promoter (<=1kb),2,79338569,79456785,118217,2,Cerkl-210,937,Cerkl-210;Neurod1-201,Cerkl;Neurod1,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,13,15,228094,ENSMUSG00000075256,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
4526,cg09185718,-0.00000946,0.00000415,-2.279728091,0.023302926,loss,ns,-0.00000199,0.00000705,-0.281997428,0.778133648,neg,ns,-0.002680755,0.00206614,-1.29747028,0.195434109,neg,ns,0.708999638,-0.0000802,0.0000711,-1.128417874,0.260016007,neg,ns,0.891624067,Flnc,Flnc_Exon,6,29454081,29454130,29454081,29454082,50,+,CGCCATGTCAGTGCCTATGGGCCAGGCCTGAGCCATGGCATGGTCAACAA,"Exon (Flnc-201/Flnc, exon 34 of 48)",6,29433276,29461883,28608,1,Flnc-201,20805,Flnc-201;Flnc-202,Flnc;Flnc,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,68794,ENSMUSG00000068699,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19834,cg27069680,-0.0000171,0.00000847,-2.015313835,0.04473457,loss,ns,0.00000406,0.0000144,0.281951727,0.778168659,pos,ns,0.0008935,0.004214949,0.21198362,0.832259119,pos,ns,0.079741437,-0.000128189,0.000144952,-0.884357419,0.377188675,neg,ns,0.880024076,Med12,Med12_Exon,X,101286128,101286177,101286176,101286177,50,+,CCGCAACATCTCTGTGGAGACAGCCAGTCTGGATGTCTATGCCAAGTACG,"Exon (Med12-204/Med12, exon 27 of 46)",20,101274030,101297465,23436,1,Med12-204,12098,Med12-204;Med12-203;Med12-201;Med12-202;Med12-209;Med12-207;Med12-208,Med12;Med12;Med12;Med12;Med12;Med12;Med12,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,15,15,59024,ENSMUSG00000079487,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3152,cg09220022,-0.00000566,0.00000248,-2.278027424,0.023405311,loss,ns,0.00000119,0.00000422,0.281907177,0.778202787,pos,ns,-0.001740015,0.001235922,-1.407868834,0.160171898,neg,ns,0.795413677,0.0000761,0.0000425,1.790724013,0.074313189,pos,ns,0.957960113,Lrmda,Lrmda_Intron,14,23015666,23015715,23015666,23015667,50,+,CGCAAATTAATCTTCCCGCTGTCCCTGGGTTATATGGCAGCCATTTAAAA,"Intron (Lrmda-201/Lrmda, intron 6 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,995954,Lrmda-201;Lrmda-206,Lrmda;Lrmda,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1978,cg01582325,-0.0000323,0.00000684,-4.729690035,0.00000342,loss,ns,0.00000327,0.0000116,0.281723427,0.77834356,pos,ns,0.002337211,0.003401918,0.687027398,0.492579087,pos,ns,0.307524031,-0.000184564,0.000116992,-1.57758158,0.115681631,neg,ns,0.926551817,Gm7537,Gm7537_Intergenic_upstream,13,16762782,16762831,16762782,16762783,50,-,CGACCAACCATGACAATAAGCACTGGCCTACATATTCAGGGCCTGAAAGA,Distal Intergenic,13,16638077,16639490,1414,2,Gm7537-201,-123341,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,6,665191,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21732,cg02773502,-0.00000341,0.00000156,-2.194292259,0.028956152,loss,ns,-0.000000744,0.00000264,-0.281613592,0.778427709,neg,ns,-0.000474531,0.000774368,-0.612797476,0.540459539,neg,ns,0.267236813,0.0000113,0.0000266,0.425632246,0.670671178,pos,ns,0.965413189,Zfhx3,Zfhx3_Intron,8,108926726,108926775,108926726,108926727,50,-,CGGAAAGTAGCATGAATTAATAATCATTTAATTGGCTCCTCCATTATGTT,"Intron (Zfhx3-204/Zfhx3, intron 11 of 15)",8,107942644,108961630,1018987,1,Zfhx3-204,984082,Zfhx3-204;Zfhx3-201,Zfhx3;Zfhx3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,114,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27106,cg16987738,0.000000203,0.00000751,0.026979857,0.978493159,gain,ns,0.00000359,0.0000128,0.281466208,0.77854063,pos,ns,0.004453126,0.003739752,1.190754248,0.234661055,pos,ns,0.629558982,-0.000233941,0.00012861,-1.818998653,0.06987631,neg,ns,0.710133304,Lrrc7,Lrrc7_Exon,3,158175228,158175277,158175228,158175229,50,+,CGGGCATATCTTGGATCTGCTGATCACACCTGGCCCATGGTGTGCAGCAA,"Exon (Lrrc7-206/Lrrc7, exon 15 of 25)",3,158082891,158353433,270543,2,Lrrc7-206,178156,Lrrc7-206;Lrrc7-205;Lrrc7-204;Lrrc7-207;Lrrc7-201,Lrrc7;Lrrc7;Lrrc7;Lrrc7;Lrrc7,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,10,242274,ENSMUSG00000028176,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24813,cg22830182,0.0000487,0.00000718,6.781771067,6.01E-11,gain,yes,-0.00000343,0.0000122,-0.281463001,0.778543087,neg,ns,0.011462191,0.003571891,3.208998124,0.001471434,pos,ns,2.832259083,-0.000287441,0.000122837,-2.340017754,0.019917049,neg,ns,0.090497756,Ikzf4,Ikzf4_Exon,10,128645711,128645760,128645759,128645760,50,-,CTGAACTTACATTATCCTTCCCTTGCCGGTGAGACCCTGGGGTGCGAACG,Promoter (<=1kb),10,128630843,128645991,15149,2,Ikzf4-201,231,Ikzf4-201;Ikzf4-209;Ikzf4-210;Ikzf4-203;Ikzf4-208;Ikzf4-204;Ikzf4-206;Ikzf4-207;Ikzf4-205;Ikzf4-202,Ikzf4;Ikzf4;Ikzf4;Ikzf4;Ikzf4;Ikzf4;Ikzf4;Ikzf4;Ikzf4;Ikzf4,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,6,22781,ENSMUSG00000002578,conserved gene and region,10,128645694,128645819,126,*,126,13,0.642857143,1.00244798,0.103174603,2.07E-10,CpGisland,TRUE,NA,NRS
22555,cg27161501,-0.00000586,0.00000215,-2.72702404,0.006754792,loss,ns,-0.00000103,0.00000365,-0.281366947,0.778616683,neg,ns,-0.001258255,0.001069475,-1.176516267,0.240291261,neg,ns,0.619262023,0.0000157,0.0000368,0.426644777,0.669934207,pos,ns,0.954125255,Rpl19-ps10,Rpl19-ps10_Intergenic_upstream,7,115131759,115131808,115131759,115131760,50,+,CGGTGGGATCTGGCAACCTGAGTTCAATAGCCAGTCCTTTTGGTCTTTCA,Distal Intergenic,7,115172056,115172385,330,1,Rpl19-ps10-201,-40248,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,29,668472,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3081,cg10662219,-0.0000144,0.0000062,-2.326935277,0.02061269,loss,ns,0.00000296,0.0000105,0.28126035,0.77869836,pos,ns,-0.009890912,0.003083897,-3.207276967,0.001479979,neg,ns,2.829744352,0.000140432,0.000106055,1.324147093,0.186429674,pos,ns,0.826417231,Lrmda,Lrmda_Intron,14,22578176,22578225,22578176,22578177,50,+,CGGGACACTTCAGAGTAATTTATTATAGGTCATTCATAAATGAAACGCAC,"Intron (Lrmda-201/Lrmda, intron 3 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,558464,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206;Lrmda-202;Lrmda-205,Lrmda;Lrmda;Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
747,cg22773167,0.0000194,0.0000126,1.543213259,0.123799212,gain,ns,0.00000602,0.0000214,0.281245343,0.778709859,pos,ns,-0.004780335,0.006271143,-0.762274961,0.446475502,neg,ns,0.350202365,0.000323668,0.000215664,1.500798337,0.134425532,pos,ns,0.018537978,Rhob,Rhob_Exon,12,8499563,8499612,8499563,8499564,50,-,CGATCAGCAGGCACGTCTTGCCACACGCGCCGTCGCCCACCACCACCAGC,Promoter (<=1kb),12,8497661,8500009,2349,2,Rhob-201,397,Rhob-201,Rhob,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,11852,ENSMUSG00000054364,conserved gene and region,12,8499329,8500048,720,*,720,87,0.679166667,1.048824593,0.120833333,5.68E-74,CpGisland,TRUE,U1,Pr-A
16514,cg13825587,0.000119082,0.0000133,8.924477643,4.00E-17,gain,yes,0.00000637,0.0000227,0.281211917,0.778735471,pos,ns,0.030204605,0.006641125,4.548115454,0.00000778,pos,ns,5.109287987,-0.000729198,0.000228388,-3.19280573,0.001553662,neg,ns,0.415217441,Camkmt,Camkmt_Intron,17,85295082,85295131,85295082,85295083,50,+,CGGTCAGTTGTTAGCTCTTCTCATCTGAGGTGTATTGATTGTATAATCAG,"Intron (Camkmt-201/Camkmt, intron 3 of 10)",17,85090552,85458588,368037,1,Camkmt-201,204530,Camkmt-201,Camkmt,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,41,44,73582,ENSMUSG00000071037,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8729,cg01204444,0.00000227,0.0000109,0.209257824,0.834384417,gain,ns,0.00000519,0.0000185,0.281153702,0.778780078,pos,ns,-0.015043552,0.005407439,-2.782010522,0.005733368,neg,ns,2.241590191,0.000490617,0.000185961,2.638274592,0.008753566,pos,ns,0.75719876,Fbxw4,Fbxw4_fiveUTR,19,45630898,45630947,45630898,45630899,50,+,CGGTCTTCAGTCTGGATGGTGTGTAAGCACTGCCCCAGCCGGCCTGAGGC,Promoter (<=1kb),19,45578254,45631138,52885,2,Fbxw4-206,191,Fbxw4-206;Fbxw4-201;Fbxw4-208;Fbxw4-202,Fbxw4;Fbxw4;Fbxw4;Fbxw4,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,14,30838,ENSMUSG00000040913,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20601,cg24363217,-0.00000494,0.00000164,-3.012993143,0.00280009,loss,ns,0.000000783,0.00000279,0.281093206,0.778826433,pos,ns,0.000563969,0.000816033,0.691110726,0.490013153,pos,ns,0.309792262,-0.0000385,0.0000281,-1.371374424,0.171250095,neg,ns,0.95483317,Nsf,Nsf_Exon,11,103828449,103828498,103828497,103828498,50,-,GCTGCTCTCCTGTGGCAATGTTGGGCACGTGGATGGTGGTGCTGAAAGCG,"Exon (Nsf-202/Nsf, exon 18 of 21)",11,103821782,103954056,132275,2,Nsf-202,125558,Nsf-202;Nsf-208;Nsf-201,Nsf;Nsf;Nsf,0;-1018;-4349,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,3,18195,ENSMUSG00000034187,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21860,cg11876905,-0.00000198,0.00000143,-1.380347349,0.168474252,loss,ns,0.000000685,0.00000244,0.281021767,0.778881176,pos,ns,-0.000352273,0.000713833,-0.493494762,0.62201247,neg,ns,0.206200909,-0.000015,0.0000245,-0.61246984,0.540675945,neg,ns,0.963758884,Lmo1,Lmo1_Intergenic_upstream,7,109261929,109261978,109261929,109261930,50,+,CGGAGTGAAATAATGATGTCTAATGCCCACACACGGCTCCCCGTGACCTT,Distal Intergenic,7,109138675,109175207,36533,2,Lmo1-202,-86722,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,34,66,109594,ENSMUSG00000036111,mapped to different genes,7,109261896,109261999,104,*,104,9,0.567307692,1.090909091,0.086538462,0.00000128,CpGisland,TRUE,U15,NS
12497,cg20577424,-0.00000113,0.00000337,-0.334027761,0.73858446,loss,ns,0.00000161,0.00000573,0.280992653,0.778903485,pos,ns,0.002557741,0.001678004,1.524275686,0.128459347,pos,ns,0.891234289,-0.0000368,0.0000577,-0.637590859,0.524210681,neg,ns,0.858076224,Megf11,Megf11_Exon,9,64697798,64697847,64697846,64697847,50,-,TCTCACTAGACTCCCATTTCCAGATCAGTGCCCTGGAGGCCAGGTACCCG,"Exon (Megf11-202/Megf11, exon 21 of 23)",9,64385626,64700975,315350,1,Megf11-202,312172,Megf11-202;Megf11-203;Megf11-210;Megf11-201;Megf11-209,Megf11;Megf11;Megf11;Megf11;Megf11,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,7,214058,ENSMUSG00000036466,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7533,cg15639204,-0.0000193,0.00000366,-5.272976438,0.000000252,loss,yes,0.00000175,0.00000622,0.28092976,0.778951679,pos,ns,-0.002944277,0.001822909,-1.615152817,0.107294882,neg,ns,0.969420996,0.0000553,0.0000627,0.882341234,0.378275966,pos,ns,0.918872976,Fam214b,Fam214b_Exon,4,43036006,43036055,43036054,43036055,50,-,GCTTGGTGGGGCAGGGGCCTGGGGGTCCAGGGCCAGGGGGTGTGTGCTCG,"Exon (Fam214b-204/Fam214b, exon 3 of 9)",4,43032414,43040288,7875,2,Fam214b-204,4233,Fam214b-204;Fam214b-205;Fam214b-202;Fam214b-203;Fam214b-201;Fam214b-207;Fam214b-210;Fam214b-206;Fam214b-209;Fam214b-208;Stoml2-201;Stoml2-207;Stoml2-202;Stoml2-208;Stoml2-205;Stoml2-204,Fam214b;Fam214b;Fam214b;Fam214b;Fam214b;Fam214b;Fam214b;Fam214b;Fam214b;Fam214b;Stoml2;Stoml2;Stoml2;Stoml2;Stoml2;Stoml2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,5,230088,ENSMUSG00000036002,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6334,cg01336082,-0.0000027,0.000000966,-2.795023624,0.005513105,loss,ns,-0.000000461,0.00000164,-0.280891207,0.778981223,neg,ns,-0.000311764,0.000480639,-0.648644281,0.51704853,neg,ns,0.286468692,0.0000105,0.0000165,0.6341808,0.526430523,pos,ns,0.974952665,Pknox2,Pknox2_Intron,9,36933239,36933288,36933287,36933288,50,-,ATGTTAAAAAATTTACACATAAAAAAATTCCATGCATGAAACTGAAACCG,"Intron (Pknox2-207/Pknox2, intron 4 of 10)",9,36890982,37083309,192328,2,Pknox2-207,150021,Pknox2-207;Pknox2-201;Pknox2-202;Pknox2-203;Pknox2-206;Pknox2-204;Pknox2-205;Pknox2-208;Pknox2-210;Pknox2-209,Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,47,208076,ENSMUSG00000035934,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1545,cg14592546,-0.0000304,0.00000997,-3.052315047,0.002467396,loss,ns,0.00000476,0.0000169,0.280748294,0.779090741,pos,ns,-0.006777668,0.004962147,-1.365874055,0.172968606,neg,ns,0.762032715,0.0000303,0.000170648,0.177572994,0.859174307,pos,ns,0.794790159,Gm50093,Gm50093_Intron,18,13589803,13589852,13589851,13589852,50,-,AGACAAACTTTTCACTGTTGACCTCCTCAGGAGTGGATTGTTTTACAACG,"Intron (AC103362.1-201/AC103362.1-201, intron 2 of 5)",18,13372089,13372552,464,1,Gm50093-201,217763,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,11,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9481,cg14814052,0.0000811,0.000011,7.349419289,1.78E-12,gain,yes,0.00000526,0.0000187,0.280704839,0.779124042,pos,ns,0.025408753,0.005488864,4.629145723,0.00000541,pos,ns,5.267081548,-0.000658713,0.000188762,-3.489656583,0.000553734,neg,ns,0.232083972,Gm49155,Gm49155_Intron,14,48854676,48854725,48854724,48854725,50,+,AGTGCAATGCAAAGACACTAGCATGCTTATCTTGCCTAACCAGATGGCCG,"Intron (Otx2os1-206/Otx2os1-206, intron 2 of 4)",14,48867329,48867800,472,2,Gm49155-201,13075,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,4,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27126,cg09237433,-0.00000983,0.00000515,-1.909426132,0.057130092,loss,ns,0.00000246,0.00000875,0.280660761,0.779157821,pos,ns,0.004179021,0.002562982,1.630530956,0.104004875,pos,ns,0.982946303,-0.000296516,0.0000881,-3.364124741,0.000864309,neg,ns,0.695884956,Pappa2,Pappa2_Exon,1,158956564,158956613,158956612,158956613,50,+,GCTTCCACTGTGAACGCCTCCCGGGGAATCTCAGCCAGCACTTCTGGACG,"Exon (Pappa2-202/Pappa2, exon 1 of 22)",1,158711727,158958367,246641,2,Pappa2-202,1754,Pappa2-202;Pappa2-206;Pappa2-203,Pappa2;Pappa2;Pappa2,0;3768;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,4,23850,ENSMUSG00000073530,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16176,cg22024413,-0.0000177,0.00000663,-2.673268323,0.007909412,loss,ns,-0.00000316,0.0000113,-0.280581141,0.779218839,neg,ns,-0.005162965,0.00329793,-1.565516754,0.118481989,neg,ns,0.926347663,0.000260936,0.000113416,2.300710849,0.022071495,pos,ns,0.830918754,Vsx2,Vsx2_Intergenic_upstream,12,84552128,84552177,84552176,84552177,50,-,TTGCCCACTAATCCCAGCTGCCATTAAAATATTAAAGATAAATCTAATCG,Distal Intergenic,12,84569762,84595457,25696,1,Vsx2-201,-17634,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,20,12677,ENSMUSG00000021239,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21790,cg10223637,-0.00000651,0.00000261,-2.494772513,0.01312398,loss,ns,-0.00000124,0.00000443,-0.280362876,0.779386118,neg,ns,-0.002471703,0.001298056,-1.904156672,0.057815428,neg,ns,1.237956253,0.0000404,0.0000446,0.905787925,0.365751573,pos,ns,0.946135387,Lmo1,Lmo1_Intron,7,109161985,109162034,109162033,109162034,50,+,AGAAATATTACTGTCCACTTTCTAAATCAATATAACACTGCTCCACGCCG,"Intron (Lmo1-201/Lmo1, intron 1 of 3)",7,109138572,109170519,31948,2,Lmo1-201,8485,Lmo1-201;Lmo1-202;Lmo1-203,Lmo1;Lmo1;Lmo1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,66,109594,ENSMUSG00000036111,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19595,cg26900397,0.000039,0.00000491,7.956052478,3.37E-14,gain,yes,0.00000234,0.00000834,0.280318688,0.779419985,pos,ns,0.007649857,0.002442846,3.13153417,0.001904813,pos,ns,2.720147737,-0.000175941,0.000084,-2.094300414,0.037044946,neg,ns,0.072243705,Gm8641,Gm8641_Intergenic_upstream,9,99995046,99995095,99995046,99995047,50,+,CGGACACCCAGATGGATTTTTTAATTCTGGGGAAAATAACACCACGCTCA,Distal Intergenic,9,99946564,99947389,826,2,Gm8641-201,-47657,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,15,667456,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
19975,cg10926148,-0.00000711,0.00000629,-1.131109858,0.258883138,loss,ns,0.00000299,0.0000107,0.280301769,0.779432952,pos,ns,-0.002343468,0.003129357,-0.748865817,0.454505909,neg,ns,0.342460467,0.0000431,0.000107618,0.400481764,0.689077564,pos,ns,0.853231473,Krt1,Krt1_Promoter,15,101850908,101850957,101850908,101850909,50,+,CGAGCCTCAACAATACGATAAACACTACACACCTAGCTCCCAGGATGGGC,Promoter (<=1kb),15,101845426,101850794,5369,2,Krt1-201,-114,Krt1-201;Krt1-203;Krt1-202,Krt1;Krt1;Krt1,-114;-1947;-4314,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,2,16678,ENSMUSG00000046834,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10627,cg27439236,-0.000015,0.0000058,-2.592894021,0.009968409,loss,ns,-0.00000276,0.00000986,-0.280229128,0.779488627,neg,ns,0.000201161,0.002888591,0.069639881,0.944525194,pos,ns,0.024786453,-0.0000634,0.0000993,-0.638340471,0.523723354,neg,ns,0.880420225,Gm12477,Gm12477_Intron,4,54689172,54689221,54689220,54689221,50,+,CTATTGAGGCTGATCCAATTTTCTAAAGTTCTCCAATTGGTTCACGATCG,"Intron (Gm12478-201/Gm12478-201, intron 1 of 1)",4,54669622,54670192,571,2,Gm12477-201,-18980,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,6,100416401,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13164,cg14270451,-0.00000025,0.00000137,-0.182003868,0.855698645,loss,ns,-0.000000654,0.00000234,-0.280213667,0.779500477,neg,ns,-0.000315264,0.000684103,-0.460841993,0.645235104,neg,ns,0.190282013,0.0000113,0.0000235,0.48079457,0.631001654,pos,ns,0.038294888,Tcf4,Tcf4_fiveUTR,18,69593535,69593584,69593583,69593584,50,+,TCCCGGGCATGGGCGGCAACTCTTTGATGTACTACTATAATGGGAAAGCG,Promoter (<=1kb),18,69593583,69651247,57665,1,Tcf4-220,0,Tcf4-201;Tcf4-207;Tcf4-240;Tcf4-254;Tcf4-246;Tcf4-206;Tcf4-202;Tcf4-257;Tcf4-232;Tcf4-248;Tcf4-231;Tcf4-205;Tcf4-253;Tcf4-238;Tcf4-249;Tcf4-219;Tcf4-227;Tcf4-250;Tcf4-229;Tcf4-260;Tcf4-226;Tcf4-216;Tcf4-256;Tcf4-230;Tcf4-221;Tcf4-234;Tcf4-258;Tcf4-217;Tcf4-247;Tcf4-252;Tcf4-218;Tcf4-243;Tcf4-237;Tcf4-239;Tcf4-262;Tcf4-223;Tcf4-212;Tcf4-204;Tcf4-225;Tcf4-222;Tcf4-261;Tcf4-255;Tcf4-203;Tcf4-241;Tcf4-236;Tcf4-228;Tcf4-220;Tcf4-242,Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,12,66,21413,ENSMUSG00000053477,conserved gene but different region,18,69593509,69593604,96,*,96,8,0.5625,1.059310345,0.083333333,0.00000859,CpGisland,TRUE,U1,Pr-A
25229,cg26890044,-0.00000288,0.00000545,-0.529164536,0.597070017,loss,ns,0.00000259,0.00000925,0.280137236,0.779559059,pos,ns,0.003825862,0.002710474,1.411510049,0.159097152,pos,ns,0.798337594,-0.0000367,0.0000932,-0.393906639,0.693920777,neg,ns,0.583113732,Dhdds,Dhdds_threeUTR,4,133970334,133970383,133970382,133970383,50,+,AAGCTTGTGTGGGCTGAGTCGACAATAGGTAATTGGATTGTAATCGCCCG,3' UTR,4,133969028,134000890,31863,2,Dhdds-209,30507,Dhdds-209;Dhdds-201;Dhdds-207;Dhdds-208;Dhdds-210;Dhdds-204;Dhdds-206;Dhdds-203;Dhdds-202;Dhdds-205;Hmgn2-203;Hmgn2-204;Hmgn2-212;Hmgn2-201;Hmgn2-202;Hmgn2-211;Hmgn2-210;Hmgn2-206;Hmgn2-205;Hmgn2-207;Hmgn2-208;Hmgn2-213;Hmgn2-209,Dhdds;Dhdds;Dhdds;Dhdds;Dhdds;Dhdds;Dhdds;Dhdds;Dhdds;Dhdds;Hmgn2;Hmgn2;Hmgn2;Hmgn2;Hmgn2;Hmgn2;Hmgn2;Hmgn2;Hmgn2;Hmgn2;Hmgn2;Hmgn2;Hmgn2,0;0;0;0;0;0;23816;30010;30010;30535;0;-2893;0;0;0;0;-3059;-3083;-3091;0;0;0;-2473,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,67422,ENSMUSG00000012117,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9289,cg17422230,-0.0000115,0.00000533,-2.167607842,0.030949404,loss,ns,-0.00000253,0.00000905,-0.280126454,0.779567323,neg,ns,-0.003762615,0.002651118,-1.419256268,0.15682902,neg,ns,0.804573571,0.0000431,0.0000912,0.473266852,0.636355889,pos,ns,0.909663751,Gm47213,Gm47213_Intergenic_downstream,9,47924114,47924163,47924162,47924163,50,-,TCCCTGATGTAACATAATGGTCACATTTTTCTTTCACAATGGTTTTGCCG,Distal Intergenic,9,47947880,47948161,282,2,Gm47213-201,24047,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,7,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6051,cg19182468,-0.00000323,0.00000277,-1.169352732,0.243159868,loss,ns,0.00000132,0.0000047,0.279979398,0.77968004,pos,ns,0.001605178,0.001376241,1.166349541,0.244369651,pos,ns,0.611952732,-0.0000441,0.0000473,-0.931356128,0.352394122,neg,ns,0.027190775,Ppp1r10,Ppp1r10_fiveUTR,17,35917700,35917749,35917700,35917701,50,+,CGCAAAAAAATTGGATAGTAAGTGTCGAATTTTCAAAAACCAGCCTTGCA,5' UTR,17,35916434,35917764,1331,1,Ppp1r10-207,1266,Mrps18b-201;Mrps18b-202;Mrps18b-208;Mrps18b-206;Mrps18b-203;Mrps18b-207;Mrps18b-205;Ppp1r10-207;Ppp1r10-202;Ppp1r10-203;Ppp1r10-204;Ppp1r10-206;Ppp1r10-201,Mrps18b;Mrps18b;Mrps18b;Mrps18b;Mrps18b;Mrps18b;Mrps18b;Ppp1r10;Ppp1r10;Ppp1r10;Ppp1r10;Ppp1r10;Ppp1r10,-1311;-1311;-1370;-1363;-1377;-1323;-1497;0;0;1121;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,4,52040,ENSMUSG00000039220,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
13487,cg12951464,-0.00000312,0.00000337,-0.927774099,0.354246546,loss,ns,0.0000016,0.00000572,0.279716776,0.779881348,pos,ns,-0.001483788,0.00167605,-0.885288968,0.376686962,neg,ns,0.424019412,-0.000066,0.0000576,-1.145840909,0.252744737,neg,ns,0.949857019,Dlgap1,Dlgap1_Exon,17,70786836,70786885,70786836,70786837,50,-,CGACCTGGACTTCCATGATAATCTGGAAAATTCTCTGGAATCTATAGAGG,"Exon (Dlgap1-207/Dlgap1, exon 11 of 14)",17,69969073,70821413,852341,1,Dlgap1-207,817763,Dlgap1-207;Dlgap1-201;Dlgap1-210;Dlgap1-214;Dlgap1-208;Dlgap1-218;Dlgap1-219;Dlgap1-206;Dlgap1-204;Dlgap1-211;Dlgap1-209;Dlgap1-202,Dlgap1;Dlgap1;Dlgap1;Dlgap1;Dlgap1;Dlgap1;Dlgap1;Dlgap1;Dlgap1;Dlgap1;Dlgap1;Dlgap1,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,224997,ENSMUSG00000003279,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22834,cg09478405,-0.0000282,0.00000508,-5.54852204,6.19E-08,loss,yes,0.00000241,0.00000863,0.279683904,0.779906547,pos,ns,-0.001450057,0.002528075,-0.573581425,0.56666696,neg,ns,0.246672109,-0.0000108,0.0000869,-0.124559612,0.900952935,neg,ns,0.918328802,Meis2,Meis2_Intron,2,116001096,116001145,116001144,116001145,50,-,CTGGCAAGGCATTGCAGGACCCCTACTTTCTTAAAATTCATACGAGCACG,"Intron (Meis2-201/Meis2, intron 7 of 11)",2,115863064,116065047,201984,2,Meis2-201,63902,Meis2-201;Meis2-203;Meis2-205;Meis2-206;Meis2-204;Meis2-202;Meis2-216;Meis2-217;Meis2-213,Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,45,97,17536,ENSMUSG00000027210,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5377,cg16290482,-0.0000124,0.0000121,-1.028184467,0.304664633,loss,ns,-0.00000573,0.0000205,-0.279657338,0.779926912,neg,ns,-0.009794095,0.005999578,-1.632464094,0.103597059,neg,ns,0.984652574,-0.0000436,0.000206325,-0.211093613,0.832952922,neg,ns,0.447951172,Kcnip1,Kcnip1_Intron,11,33659680,33659729,33659728,33659729,50,+,CGATAATAGTTCTGTCTCATTTAGAAGCAAATCAGACATTATGAACTTCG,"Intron (Kcnip1-202/Kcnip1, intron 1 of 7)",11,33629339,33843461,214123,2,Kcnip1-202,183732,Kcnip1-202;Kcnip1-201;Kcnip1-203;Kcnip1-207;Kcnip1-206;Kcnip1-205;Kcnip1-204,Kcnip1;Kcnip1;Kcnip1;Kcnip1;Kcnip1;Kcnip1;Kcnip1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,4,70357,ENSMUSG00000053519,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2049,cg21616364,-0.0000196,0.00000572,-3.427896936,0.000690472,loss,ns,0.00000271,0.00000971,0.27946366,0.780075384,pos,ns,0.002374692,0.002845857,0.83443818,0.404676664,pos,ns,0.392891839,-0.000200014,0.0000979,-2.043700311,0.041828124,neg,ns,0.070766846,Cited2,Cited2_fiveUTR,10,17723204,17723253,17723252,17723253,50,-,TGTGGCCAAAGCCCTAAGAAACACAGCTCATTGTTGGCAGCTGCCGGGCG,Promoter (<=1kb),10,17723218,17725674,2457,1,Cited2-201,0,Cited2-201;Cited2-203;Cited2-202,Cited2;Cited2;Cited2,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,11,17684,ENSMUSG00000039910,conserved gene and region,10,17722945,17723545,601,*,601,59,0.665557404,0.891489629,0.098169717,1.77E-44,CpGisland,TRUE,U1,Pr-A
14825,cg19385750,0.000004,0.00000144,2.768850395,0.0059642,gain,ns,0.000000685,0.00000245,0.279435192,0.780097208,pos,ns,-0.001747012,0.000718464,-2.431593126,0.015598827,neg,ns,1.806908066,0.0000823,0.0000247,3.332423886,0.00096516,pos,ns,0.957866382,Fam172a,Fam172a_Intron,13,77891649,77891698,77891649,77891650,50,-,CGGCAGTGGCAGTTATGTTCCTGATAAATTTGTAACCCCCAGGAACACCT,"Intron (Fam172a-203/Fam172a, intron 6 of 10)",13,77708690,78163655,454966,1,Fam172a-203,182959,Fam172a-203;Fam172a-201;Fam172a-202;Fam172a-209;Fam172a-205;Fam172a-207;Fam172a-208,Fam172a;Fam172a;Fam172a;Fam172a;Fam172a;Fam172a;Fam172a,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,24,68675,ENSMUSG00000064138,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8128,cg06181752,0.0000163,0.00000284,5.721088359,2.49E-08,gain,yes,-0.00000135,0.00000483,-0.279383233,0.780137042,neg,ns,0.003255247,0.001415492,2.299728246,0.022127867,pos,ns,1.655060452,-0.0000353,0.0000487,-0.724851775,0.46908972,neg,ns,0.069340572,Pax2,Pax2_Exon,19,44760885,44760934,44760933,44760934,50,+,GGGTGTGAACCAGCTCGGGGGGGTGTTTGTGAACGGCCGGCCCCTACCCG,"Exon (Pax2-203/Pax2, exon 2 of 10)",19,44756045,44837851,81807,1,Pax2-203,4840,Pax2-203;Pax2-201;Pax2-202,Pax2;Pax2;Pax2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,16,166,18504,ENSMUSG00000004231,conserved gene and region,19,44760882,44761007,126,*,126,11,0.706349206,0.715170279,0.087301587,0.000000046,CpGisland,TRUE,U13,Hc-P
835,cg20829498,-0.000000494,0.00000141,-0.350847217,0.725941275,loss,ns,-0.000000669,0.00000239,-0.279349323,0.780163039,neg,ns,-0.000830643,0.000701213,-1.184580411,0.237090775,neg,ns,0.625085343,0.00000272,0.0000241,0.112779877,0.910278068,pos,ns,0.972769366,Chd7,Chd7_Exon,4,8866100,8866149,8866100,8866101,50,+,CGGGCTGTTGAATAACCCTCTGTCAGCTGCTACTGGAAACACCACTACTG,"Exon (Chd7-201/Chd7, exon 38 of 38)",4,8690921,8866810,175890,1,Chd7-201,175179,Chd7-201;Chd7-202;Chd7-206,Chd7;Chd7;Chd7,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,16,320790,ENSMUSG00000041235,conserved gene and region,4,8866013,8866101,89,*,89,10,0.730337079,0.847619048,0.112359551,1.95E-08,CpGisland,TRUE,U10,Tr-S
2743,cg21501358,0.0000787,0.0000077,10.21610962,2.61E-21,gain,yes,-0.00000365,0.0000131,-0.279264683,0.780227928,neg,ns,0.014334906,0.003834083,3.738809348,0.000220155,pos,ns,3.657272139,-0.000390656,0.000131854,-2.962794452,0.003284561,neg,ns,0.101447618,Klhl14,Klhl14_fiveUTR,18,21654676,21654725,21654724,21654725,50,-,AGAAACAACACATCATTATCCTTGGGCCTGGGGCTCAGTGAGTCGTAACG,Promoter (<=1kb),18,21550379,21654718,104340,2,Klhl14-202,0,Klhl14-201;Klhl14-202,Klhl14;Klhl14,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,38,225266,ENSMUSG00000042514,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
10953,cg27102495,-0.00000109,0.0000034,-0.319732736,0.749386313,loss,ns,-0.00000161,0.00000578,-0.279217707,0.780263943,neg,ns,0.00086757,0.001693593,0.512265929,0.608829672,pos,ns,0.21550419,-0.0000587,0.0000582,-1.008372681,0.314062003,neg,ns,0.933763108,Tcf7l2,Tcf7l2_Intron,19,55912095,55912144,55912143,55912144,50,+,AATTTAATGTTTTCTCACCGAGATCTAAATACCGAAAGAGGCCCAAAGCG,"Intron (Tcf7l2-213/Tcf7l2, intron 6 of 13)",19,55741820,55933229,191410,1,Tcf7l2-213,170275,Tcf7l2-213;Tcf7l2-201;Tcf7l2-208;Tcf7l2-211;Tcf7l2-212;Tcf7l2-206;Tcf7l2-204;Tcf7l2-205;Tcf7l2-222;Tcf7l2-215;Tcf7l2-214;Tcf7l2-207;Tcf7l2-202;Tcf7l2-209;Tcf7l2-210;Tcf7l2-217;Tcf7l2-220;Tcf7l2-218;Tcf7l2-203;Tcf7l2-216;Tcf7l2-219;Tcf7l2-221,Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,55,88,21416,ENSMUSG00000024985,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19596,cg00061684,0.0000682,0.0000102,6.665143601,1.21E-10,gain,yes,0.00000486,0.0000174,0.279198776,0.780278457,pos,ns,0.026282256,0.005095335,5.158101979,0.000000446,pos,ns,6.350782603,-0.000574858,0.000175228,-3.280625163,0.001153807,neg,ns,0.176980596,Kitl,Kitl_Intron,10,100017890,100017939,100017890,100017891,50,+,CGCTTTGATTAAATGGCTGTGTAAATCGGATTACATGGAATAATTCCATT,"Intron (Kitl-202/Kitl, intron 1 of 9)",10,100015630,100100416,84787,1,Kitl-202,2260,Kitl-202;Kitl-205;Kitl-203;Kitl-204;Kitl-201,Kitl;Kitl;Kitl;Kitl;Kitl,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,17311,ENSMUSG00000019966,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13686,cg24326951,0.00000783,0.00000633,1.236506756,0.217206247,gain,ns,0.000003,0.0000108,0.279102602,0.780352191,pos,ns,-0.00260646,0.003152506,-0.826789832,0.40899212,neg,ns,0.388285059,0.0000456,0.000108414,0.420752671,0.674227229,pos,ns,0.86332468,Pitpnm3,Pitpnm3_Exon,11,72056274,72056323,72056274,72056275,50,-,CGTGATGTAAAGGATCATGTAGCCCAAGTCCTGCCAGTGCCTGGTGAGAT,"Exon (Pitpnm3-202/Pitpnm3, exon 17 of 19)",11,72047528,72135721,88194,2,Pitpnm3-202,79398,Pitpnm3-202;Pitpnm3-201;Pitpnm3-204;Pitpnm3-203,Pitpnm3;Pitpnm3;Pitpnm3;Pitpnm3,0;0;-4225;5238,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,3,327958,ENSMUSG00000040543,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10617,cg03576335,-0.00000426,0.00000121,-3.509000058,0.000516415,loss,ns,-0.000000575,0.00000206,-0.279059478,0.780385255,neg,ns,0.001988512,0.00060387,3.292949968,0.001106047,pos,ns,2.956226585,-0.0000447,0.0000208,-2.1529913,0.03209058,neg,ns,0.962744475,Rnf44,Rnf44_fiveUTR,13,54683968,54684017,54684016,54684017,50,+,TGGAGATCAACCATGAACGGGCTCTGCTGGGTGGCTGGGTGCAGCATTCG,5' UTR,13,54679399,54687808,8410,2,Rnf44-218,3791,Rnf44-218;Rnf44-204;Rnf44-201;Rnf44-211;Rnf44-217;Rnf44-208;Rnf44-213;Rnf44-206;Rnf44-209;Rnf44-207;Rnf44-205;Rnf44-202;Rnf44-210;Rnf44-214;Rnf44-215;Rnf44-203;Rnf44-212;Rnf44-216,Rnf44;Rnf44;Rnf44;Rnf44;Rnf44;Rnf44;Rnf44;Rnf44;Rnf44;Rnf44;Rnf44;Rnf44;Rnf44;Rnf44;Rnf44;Rnf44;Rnf44;Rnf44,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,3,105239,ENSMUSG00000034928,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7262,cg08095446,0.00000373,0.00000621,0.601731873,0.547792435,gain,ns,0.00000294,0.0000105,0.278948771,0.780470135,pos,ns,0.007156253,0.003088325,2.317195598,0.021144318,pos,ns,1.674806316,-0.00026258,0.000106207,-2.472338842,0.013959647,neg,ns,0.85768679,Thoc2,Thoc2_Exon,X,41822832,41822881,41822880,41822881,50,-,TATCATGTATGACTTTCTACTTTTCAACTGCCCAGAGTAGCTGAAAGTCG,"Exon (Thoc2-201/Thoc2, exon 29 of 39)",20,41794991,41911901,116911,2,Thoc2-201,89020,Thoc2-201;Thoc2-202;Thoc2-211;Thoc2-214,Thoc2;Thoc2;Thoc2;Thoc2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,7,331401,ENSMUSG00000037475,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5571,cg10173189,-0.00000942,0.0000038,-2.479328325,0.013694359,loss,ns,0.0000018,0.00000645,0.278931634,0.780483274,pos,ns,-0.003511049,0.001890219,-1.857482373,0.064190689,neg,ns,1.19252796,-0.00000837,0.000065,-0.128795554,0.897602943,neg,ns,0.916487604,Hdac9,Hdac9_Intron,12,34279022,34279071,34279070,34279071,50,+,GCCAATAGTGATGTGATTGGAGTTGCCTCCTCTGAGCCATAAAAGAAGCG,"Intron (Hdac9-205/Hdac9, intron 15 of 24)",12,34047580,34528328,480749,2,Hdac9-205,249257,Hdac9-205;Hdac9-204;Hdac9-206;Hdac9-210;Hdac9-207,Hdac9;Hdac9;Hdac9;Hdac9;Hdac9,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,19,31,79221,ENSMUSG00000004698,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11289,cg22881140,0.0000781,0.00000505,15.47490201,2.01E-40,gain,yes,0.00000239,0.00000857,0.278782938,0.780597287,pos,ns,0.00918586,0.002511198,3.657958914,0.000298641,pos,ns,3.524850428,0.0000187,0.0000864,0.216856937,0.828462483,pos,ns,0.109113697,Hand2,Hand2_Intergenic_downstream,8,57328604,57328653,57328652,57328653,50,+,TGTCCGTCTTTATCTCCGCTATTAGGGACATCTGGGAGTGATTAGTGCCG,Distal Intergenic,8,57320983,57324633,3651,1,Hand2-201,7621,Hand2-201,Hand2,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,9,15111,ENSMUSG00000038193,mapped to different genes,8,57328608,57328867,260,*,260,26,0.626923077,1.022383545,0.1,4.14E-20,CpGisland,TRUE,U3,Pr-B
25397,cg04611908,-0.00000316,0.00000399,-0.79258163,0.428627743,loss,ns,-0.00000189,0.00000678,-0.27877178,0.780605842,neg,ns,-0.00363453,0.001985386,-1.83064208,0.068113852,neg,ns,1.166764558,0.000144502,0.0000683,2.116398641,0.035107605,pos,ns,0.91004861,Gm9341,Gm9341_Intergenic_downstream,7,136209192,136209241,136209240,136209241,50,-,CTTCCGGGCATATTGTATTTCTTTTGACAGATTAATTAGAAATTCAGCCG,Distal Intergenic,7,135952798,135953783,986,1,Gm9341-201,256443,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,27,28,668764,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6359,cg12918581,0.00000676,0.00000385,1.755736573,0.080120984,gain,ns,0.00000182,0.00000654,0.278751596,0.780621319,pos,ns,0.004702686,0.00191506,2.45563346,0.014612256,pos,ns,1.835282733,-0.000176135,0.0000659,-2.67444275,0.007882397,neg,ns,0.89862593,Btaf1,Btaf1_Exon,19,36990747,36990796,36990795,36990796,50,+,TATATGTGCCTTCAATACCCCAGTACTGCAGTGAGGCACATGGCTGCTCG,"Exon (Btaf1-201/Btaf1, exon 24 of 38)",19,36926079,37012752,86674,1,Btaf1-201,64668,Btaf1-201;Btaf1-203,Btaf1;Btaf1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,107182,ENSMUSG00000040565,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26944,cg12463232,-0.00000135,0.00000169,-0.797077153,0.42601628,loss,ns,0.0000008,0.00000287,0.278654827,0.780695519,pos,ns,0.000252467,0.000841423,0.30004807,0.764341588,pos,ns,0.11671251,0.0000056,0.0000289,0.193540742,0.846662252,pos,ns,0.036031009,Ski,Ski_Exon,4,155222018,155222067,155222066,155222067,50,-,GGCAGGATGCCCATGACTTTGAGGATCTCCAGCTGGTCGGCCGTGCAGCG,Promoter (<=1kb),4,155154075,155222535,68461,2,Ski-202,468,Ski-202;Ski-201,Ski;Ski,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,8,20481,ENSMUSG00000029050,conserved gene and region,4,155222055,155223570,1516,*,1516,233,0.779683377,1.023683112,0.153693931,4.87E-226,CpGisland,TRUE,NA,NRS
756,cg05247265,-0.00000126,0.00000572,-0.220608345,0.825542623,loss,ns,0.00000271,0.00000971,0.278511511,0.780805415,pos,ns,0.009008748,0.002845634,3.165813962,0.001700239,pos,ns,2.769490083,-0.000152923,0.0000979,-1.562657075,0.119153516,neg,ns,0.600759944,Rab2a,Rab2a_Intron,4,8605682,8605731,8605682,8605683,50,+,CGAAAAGAAACCACATCAGCTGCTGTCAATACTGAGCTAGTGCCAGAAAC,"Intron (Rab2a-201/Rab2a, intron 7 of 7)",4,8535644,8607778,72135,1,Rab2a-201,70038,Rab2a-201,Rab2a,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,59021,ENSMUSG00000047187,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18387,cg01591148,-0.0000451,0.000015,-3.016011137,0.002773166,loss,ns,-0.00000708,0.0000254,-0.278456,0.780847982,neg,ns,0.027655698,0.007447992,3.713174933,0.000242642,pos,ns,3.615034151,-0.00035514,0.000256136,-1.386530414,0.166581312,neg,ns,0.621997943,Arhgef9,Arhgef9_Exon,X,95077497,95077546,95077497,95077498,50,-,CGCTTGCGTTCGTTGATCTGCTGAGTCACATTTCTCATGACAGCCAAAGC,"Exon (Arhgef9-202/Arhgef9, exon 6 of 10)",20,95048935,95166361,117427,2,Arhgef9-202,88815,Arhgef9-202;Arhgef9-217;Arhgef9-205;Arhgef9-207;Arhgef9-210;Arhgef9-203;Arhgef9-209;Arhgef9-206;Arhgef9-208;Arhgef9-204;Arhgef9-216;Arhgef9-215;Arhgef9-219;Arhgef9-201;Arhgef9-218;Arhgef9-220,Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9;Arhgef9,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,14,236915,ENSMUSG00000025656,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2510,cg02229115,0.0000432,0.000014,3.094205861,0.002153252,gain,ns,0.0000066,0.0000237,0.278401707,0.780889616,pos,ns,-0.010639629,0.006943568,-1.532300023,0.126468267,neg,ns,0.898018432,0.000328942,0.000238789,1.377542681,0.169338227,pos,ns,0.662692194,Pkhd1,Pkhd1_Intron,1,20107053,20107102,20107101,20107102,50,-,AATTGATTCAAGTTACCAAGCAATGATGGGCCACTTATATAATCTAGGCG,"Intron (Pkhd1-201/Pkhd1, intron 61 of 66)",1,20057779,20618064,560286,2,Pkhd1-201,510962,Pkhd1-201,Pkhd1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,25,241035,ENSMUSG00000043760,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2360,cg07536920,0.00000546,0.00000562,0.970083482,0.332761148,gain,ns,-0.00000266,0.00000955,-0.27838236,0.780904452,neg,ns,-0.011160498,0.002799114,-3.987154179,0.0000835,neg,ns,4.078535758,0.000358486,0.0000963,3.724090728,0.000232814,pos,ns,0.125950155,Rorb,Rorb_fiveUTR,19,19111077,19111126,19111125,19111126,50,-,GTGGATGGCAGAGCATGTGCGTTTTCACATGACATCTGTGCCTGTTAGCG,Promoter (<=1kb),19,18930605,19111196,180592,2,Rorb-203,70,Rorb-203,Rorb,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,10,225998,ENSMUSG00000036192,mapped to different genes,19,19111073,19111383,311,*,311,21,0.61414791,0.77107438,0.067524116,9.07E-13,CpGisland,TRUE,NA,NRS
4997,cg07707172,0.000000471,0.0000019,0.247478682,0.804701616,gain,ns,0.0000009,0.00000323,0.278323988,0.780949215,pos,ns,0.00035218,0.00094744,0.371717814,0.710356905,pos,ns,0.148523393,-0.0000293,0.0000326,-0.90022859,0.368697402,neg,ns,0.954468508,Babam2,Babam2_Intron,5,31750607,31750656,31750655,31750656,50,+,CATAAAACAGCTTTAAAGATTTGGTCGCTGGCCATTGCCAGATTGCACCG,"Intron (Babam2-209/Babam2, intron 3 of 11)",5,31697684,32084962,387279,1,Babam2-209,52923,Babam2-209;Babam2-207;Babam2-208;Babam2-204;Babam2-201;Babam2-202;Babam2-203;Babam2-205;Babam2-215;Babam2-206,Babam2;Babam2;Babam2;Babam2;Babam2;Babam2;Babam2;Babam2;Babam2;Babam2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,107976,ENSMUSG00000052139,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9090,cg00216659,-0.00000122,0.00000196,-0.623210569,0.533604386,loss,ns,-0.000000924,0.00000332,-0.278182601,0.781057641,neg,ns,0.000826742,0.000973189,0.849519272,0.396247988,pos,ns,0.40203293,0.00000441,0.0000335,0.131761,0.895258808,pos,ns,0.054947595,Slc39a10,Slc39a10_fiveUTR,1,46853438,46853487,46853486,46853487,50,+,GGGAATGTAAACAAATCGGGGTTTTATAGTTACCTCACACTCGAGTGCCG,Promoter (<=1kb),1,46807544,46854046,46503,2,Slc39a10-201,559,Slc39a10-201;Slc39a10-204;Slc39a10-203,Slc39a10;Slc39a10;Slc39a10,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,4,227059,ENSMUSG00000025986,conserved gene and region,1,46852697,46854136,1440,*,1440,172,0.693055556,1.006927505,0.119444444,1.33E-144,CpGisland,TRUE,U1,Pr-A
17950,cg01938074,-0.0000073,0.00000298,-2.448168913,0.0149125,loss,ns,0.00000141,0.00000507,0.278095509,0.781124432,pos,ns,-0.00312828,0.00148409,-2.107877702,0.035844086,neg,ns,1.445582484,-0.0000528,0.000051,-1.034212666,0.301842867,neg,ns,0.907939668,Gapdh-ps16,Gapdh-ps16_Intergenic_upstream,8,92743655,92743704,92743655,92743656,50,+,CGGGAAAGGGAAGAAAAATTAAAAACAAAATAGTCAAGCATACAGAATGA,Distal Intergenic,8,92715747,92716975,1229,2,Gapdh-ps16-201,-26680,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,3,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6916,cg09382150,-0.000000457,0.00000427,-0.107108747,0.914771991,loss,ns,0.00000202,0.00000725,0.278078491,0.781137484,pos,ns,0.000258019,0.002125144,0.121412422,0.903443039,pos,ns,0.044099224,-0.0000312,0.0000731,-0.426431253,0.670089595,neg,ns,0.904970107,Rims2,Rims2_Exon,15,39534938,39534987,39534938,39534939,50,+,CGTCCTGATACAAACCTCATGAGGTCGATGCCTTCATTAATGACTGGAAG,"Exon (Rims2-205/Rims2, exon 17 of 26)",15,39198332,39681940,483609,1,Rims2-202,336606,Rims2-202;Rims2-205;Rims2-201;Rims2-206,Rims2;Rims2;Rims2;Rims2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,16,19,116838,ENSMUSG00000037386,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16398,cg19908008,0.00000783,0.00000368,2.127317285,0.034182889,gain,ns,0.00000174,0.00000626,0.278047276,0.781161423,pos,ns,0.006820161,0.001833041,3.720681283,0.000235842,pos,ns,3.627378171,-0.000174809,0.000063,-2.773060916,0.005889447,neg,ns,0.896026367,Ggnbp2,Ggnbp2_Exon,11,84833025,84833074,84833025,84833026,50,+,CGTTGTCAACCAGCCACTACAAATGGGCCTCTTGTGATCATTTAACCGGC,"Exon (Ggnbp2-213/Ggnbp2, exon 14 of 14)",11,84832361,84870738,38378,2,Ggnbp2-213,37664,Dhrs11-201;Dhrs11-202;Ggnbp2-213;Ggnbp2-203;Ggnbp2-211;Ggnbp2-206;Ggnbp2-201;Ggnbp2-202;Ggnbp2-204;Ggnbp2-212;Ggnbp2-210,Dhrs11;Dhrs11;Ggnbp2;Ggnbp2;Ggnbp2;Ggnbp2;Ggnbp2;Ggnbp2;Ggnbp2;Ggnbp2;Ggnbp2,-4061;-4031;0;0;0;0;0;0;3394;0;4910,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,217039,ENSMUSG00000020530,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20697,cg01328691,0.00000569,0.00000701,0.812357767,0.417209754,gain,ns,0.00000331,0.0000119,0.277946055,0.781239052,pos,ns,-0.004427665,0.003489136,-1.268986149,0.205397965,neg,ns,0.687403864,0.000173126,0.000119991,1.442825408,0.150079301,pos,ns,0.821548172,Dab1,Dab1_fiveUTR,4,104479173,104479222,104479173,104479174,50,-,CGGGATCTGTGTGAAGTGGACTAAGGATTAAGTAGGATGTCAACTGAGAC,5' UTR,4,103619665,104680382,1060718,1,Dab1-202,859508,Dab1-202;Dab1-206;Dab1-207;Dab1-203,Dab1;Dab1;Dab1;Dab1,0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,13,13131,ENSMUSG00000028519,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22804,cg23015165,0.00000112,0.0000015,0.748977501,0.454438688,gain,ns,0.000000708,0.00000255,0.277944143,0.781240519,pos,ns,0.0000753,0.000745749,0.101032741,0.919589782,pos,ns,0.036405863,-0.0000315,0.0000256,-1.229251788,0.219909635,neg,ns,0.052535287,Dmbx1,Dmbx1_Intergenic_upstream,4,115963203,115963252,115963251,115963252,50,-,CGAGGGGCCGCCAGATTGTTCCCTTCATAATTGATTGACTCTATTTGCCG,Distal Intergenic,4,115915119,115939926,24808,2,Dmbx1-203,-23326,Faah-202,Faah,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,15,42,140477,ENSMUSG00000028707,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
9420,cg13889775,0.00000393,0.0000037,1.062857593,0.288673788,gain,ns,-0.00000175,0.00000629,-0.277861391,0.781303986,neg,ns,0.000341912,0.001842338,0.185585925,0.852890861,pos,ns,0.069106539,-0.0000531,0.0000634,-0.837744053,0.40281988,neg,ns,0.921778955,Zbtb16,Zbtb16_Intron,9,48678592,48678641,48678640,48678641,50,-,AGAGAGCTACTCCAGTGCTTCATTGGCATTCGAGTTGGGCTACTGTGTCG,"Intron (Zbtb16-201/Zbtb16, intron 4 of 6)",9,48654297,48835945,181649,2,Zbtb16-201,157304,Zbtb16-201;Zbtb16-202,Zbtb16;Zbtb16,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,37,235320,ENSMUSG00000066687,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2171,cg13757685,0.0000533,0.0000117,4.560338232,0.00000736,gain,ns,-0.00000552,0.0000199,-0.277782617,0.781364402,neg,ns,0.00015004,0.005819111,0.025784076,0.979446153,pos,ns,0.009019435,-0.0000468,0.000200119,-0.234069004,0.815085916,neg,ns,0.781289999,Cyp7b1,Cyp7b1_Intron,3,18190072,18190121,18190120,18190121,50,+,CAACAGATGAACAAAGCCCACATTCAAATCTGTAGCTCATTAAAATAACG,"Intron (Cyp7b1-201/Cyp7b1, intron 1 of 5)",3,18071950,18243338,171389,2,Cyp7b1-201,53217,Cyp7b1-201,Cyp7b1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,17,13123,ENSMUSG00000039519,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26353,cg18188156,0.00000371,0.00000154,2.408009763,0.016623408,gain,ns,0.000000727,0.00000262,0.277776152,0.781369361,pos,ns,0.001082536,0.000766969,1.411446393,0.159115894,pos,ns,0.798286437,0.0000154,0.0000264,0.584103127,0.55957572,pos,ns,0.958931863,Kiz,Kiz_Intron,2,146956519,146956568,146956567,146956568,50,+,GACTCAATTGACACCTCAGTGAACCACAAATTAGCGTCTACAGCTGCTCG,"Intron (Kiz-201/Kiz, intron 12 of 13)",2,146855864,146970097,114234,1,Kiz-201,100655,Kiz-201;Kiz-202,Kiz;Kiz,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,29,228730,ENSMUSG00000074749,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3078,cg00915395,0.0000643,0.0000119,5.414022343,0.000000124,gain,yes,-0.0000056,0.0000202,-0.277713972,0.781417052,neg,ns,0.012055718,0.005910243,2.039800915,0.042217607,pos,ns,1.374506384,-0.00022314,0.000203253,-1.097846514,0.273123501,neg,ns,0.513096785,Dgkg,Dgkg_threeUTR,16,22572627,22572676,22572627,22572628,50,+,CGCGGTGACACTCTGGTAGCACTTGATACTTTTGTGGCACCGGTCACACT,3' UTR,16,22468461,22657173,188713,2,Dgkg-202,84497,Dgkg-202;Dgkg-201;Dgkg-203,Dgkg;Dgkg;Dgkg,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,1,110197,ENSMUSG00000022861,conserved gene but different region,16,22572592,22572703,112,*,112,10,0.616071429,0.975609756,0.089285714,0.000000188,CpGisland,TRUE,U15,NS
11154,cg16159568,-0.0000113,0.0000104,-1.092330109,0.275536199,loss,ns,-0.00000489,0.0000176,-0.277670159,0.781450657,neg,ns,-0.003738457,0.00516285,-0.724107192,0.469546028,neg,ns,0.328321829,0.000267178,0.00017755,1.504806165,0.133392075,pos,ns,0.895013299,Fhl1,Fhl1_Exon,X,56790565,56790614,56790565,56790566,50,-,CGCTGTGGAGGACCAGTATTACTGCGTGGATTGCTACAAGAACTTTGTGG,"Exon (Fhl1-201/Fhl1, exon 6 of 7)",20,56731787,56793346,61560,1,Fhl1-201,58778,Fhl1-201;Fhl1-203;Fhl1-206;Fhl1-205;Fhl1-204;Fhl1-202;Fhl1-210;Fhl1-207;Fhl1-208;Fhl1-209,Fhl1;Fhl1;Fhl1;Fhl1;Fhl1;Fhl1;Fhl1;Fhl1;Fhl1;Fhl1,0;0;0;0;0;0;10746;0;2840;2567,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,11,14199,ENSMUSG00000023092,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24652,cg08780173,0.00000907,0.0000154,0.588951911,0.556322441,gain,ns,-0.00000726,0.0000262,-0.27754691,0.78154519,neg,ns,0.043229216,0.007665032,5.639795655,3.84E-08,pos,ns,7.416154155,-0.003302796,0.0002636,-12.52958169,2.03E-29,neg,yes,0.714695151,R3hdm2,R3hdm2_threeUTR,10,127498641,127498690,127498641,127498642,50,+,CGCTTCAAACTTCGAATGGCCAAAAAGAACTATGACCTGAGGATCCTGGA,3' UTR,10,127380662,127499360,118699,1,R3hdm2-212,117979,R3hdm2-212;R3hdm2-202;R3hdm2-204;R3hdm2-201;R3hdm2-218;R3hdm2-208;R3hdm2-210;R3hdm2-205;R3hdm2-203;R3hdm2-216;R3hdm2-213;R3hdm2-219;Stac3-202;Stac3-203;Stac3-201,R3hdm2;R3hdm2;R3hdm2;R3hdm2;R3hdm2;R3hdm2;R3hdm2;R3hdm2;R3hdm2;R3hdm2;R3hdm2;R3hdm2;Stac3;Stac3;Stac3,0;0;0;0;0;0;0;0;0;0;13159;0;0;-3004;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,8,71750,ENSMUSG00000025404,conserved gene but different region,10,127498508,127498693,186,*,186,13,0.61827957,0.740808824,0.069892473,2.81E-08,CpGisland,TRUE,U10,Tr-S
27219,cg05549807,0.00000226,0.00000403,0.561791063,0.574664316,gain,ns,-0.0000019,0.00000684,-0.277511143,0.781572624,neg,ns,-0.001848576,0.002004296,-0.922306864,0.357085786,neg,ns,0.447227437,-0.000192995,0.0000689,-2.799974857,0.005431335,neg,ns,0.903159195,Rc3h1,Rc3h1_Exon,1,160930189,160930238,160930189,160930190,50,+,CGAAAGCCCATCAGTTTGGGTTGTGGCCATACTGTCTGCAAGATGTGCCT,"Exon (Rc3h1-202/Rc3h1, exon 2 of 20)",1,160906418,160974978,68561,1,Rc3h1-202,23771,Rc3h1-202;Rc3h1-204;Rc3h1-201,Rc3h1;Rc3h1;Rc3h1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,8,381305,ENSMUSG00000040423,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
350,cg19357353,0.0000834,0.0000103,8.089076807,1.37E-14,gain,yes,-0.00000486,0.0000175,-0.277385406,0.781669071,neg,ns,0.01507796,0.005130706,2.93876931,0.003542584,pos,ns,2.450679882,-0.000539151,0.000176445,-3.055639544,0.002441005,neg,ns,0.168779141,Zfhx4,Zfhx4_fiveUTR,3,5221622,5221671,5221622,5221623,50,+,CGACAGTGACACGGGCATCGATCGCTTCCATTGAGAGCAATGCAAAAACA,5' UTR,3,5218526,5413165,194640,1,Zfhx4-203,3096,Zfhx4-203;Zfhx4-202;Zfhx4-201;Zfhx4-204,Zfhx4;Zfhx4;Zfhx4;Zfhx4,0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,10,77,80892,ENSMUSG00000025255,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
25091,cg12566859,-0.00000156,0.000000602,-2.594421836,0.009925171,loss,ns,0.000000284,0.00000102,0.27732856,0.781712676,pos,ns,0.000142794,0.000299642,0.476548038,0.634019713,pos,ns,0.197897239,-0.00000771,0.0000103,-0.748391123,0.454791682,neg,ns,0.013410419,Abraxas2,Abraxas2_Exon,7,132859266,132859315,132859266,132859267,50,+,CGGCGTCCATTTCGGGCTACACCTTCAGTGCTGTGTGTTTCCACAGCGCC,Promoter (<=1kb),7,132859307,132878614,19308,1,Abraxas2-204,0,Abraxas2-201;Abraxas2-208;Abraxas2-207;Abraxas2-202;Abraxas2-206;Abraxas2-203;Abraxas2-204;Fgfr2-217,Abraxas2;Abraxas2;Abraxas2;Abraxas2;Abraxas2;Abraxas2;Abraxas2;Fgfr2,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,109359,ENSMUSG00000030965,conserved gene and region,7,132859158,132859533,376,*,376,35,0.686170213,0.793153327,0.093085106,9.21E-26,CpGisland,TRUE,U1,Pr-A
22419,cg26150823,-0.00000305,0.00000431,-0.709314575,0.478662414,loss,ns,-0.00000203,0.00000732,-0.27730353,0.781731876,neg,ns,0.000673538,0.002143386,0.31424012,0.753550044,pos,ns,0.1228879,-0.00010215,0.0000737,-1.385823929,0.166796786,neg,ns,0.888987075,Dph6,Dph6_Intergenic_downstream,2,114460224,114460273,114460272,114460273,50,-,GTTTCAGGAAATGATGAGCTCCTTTGCTGAAGATATCCAAATTGAGACCG,Distal Intergenic,2,114518145,114545891,27747,2,Dph6-204,85667,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,10,66632,ENSMUSG00000057147,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21909,cg14705908,0.000000267,0.000000414,0.645302512,0.519208472,gain,ns,0.000000195,0.000000703,0.277253597,0.781770178,pos,ns,-0.000112783,0.000205878,-0.547813095,0.584214462,neg,ns,0.233427697,-0.00000195,0.00000708,-0.275283281,0.783282,neg,ns,0.988237418,Rtl1,Rtl1_Exon,12,109710205,109710254,109710205,109710206,50,-,CGTACGCTTTATCTGTGACGTATGTAACACGGTCCACTAACCCTCAGTAT,"Exon (Mir411-201/Mir411-201, exon 1 of 1)",12,109589193,109600330,11138,2,Rtl1-201,-109924,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,9,353326,ENSMUSG00000085925,mapped to different genes,12,109710141,109710303,163,*,163,11,0.539877301,0.926614987,0.067484663,0.000000642,CpGisland,TRUE,U11,Tr-P
1178,cg23208242,0.00000243,0.00000893,0.272387717,0.785505256,gain,ns,-0.0000042,0.0000152,-0.277209908,0.781803692,neg,ns,0.006031825,0.004442329,1.357806878,0.175512469,pos,ns,0.755692024,-0.000115019,0.000152771,-0.752881138,0.45209269,neg,ns,0.719182246,Gm14512,Gm14512_Intergenic_downstream,X,11998135,11998184,11998183,11998184,50,+,AATTTCTCTGCGAACACAAGATGGCAGCCTTAAATAAATGCAACCCTGCG,Distal Intergenic,20,11984468,11984697,230,1,Gm14512-201,13667,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,22,22,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13604,cg18619591,-0.0000244,0.0000133,-1.841507185,0.066502496,loss,ns,0.00000624,0.0000225,0.277187023,0.781821247,pos,ns,-0.006950683,0.00659503,-1.053927345,0.292736926,neg,ns,0.533522492,0.00025813,0.000226803,1.138124376,0.255947375,pos,ns,0.362306624,Dlx1,Dlx1_fiveUTR,2,71529713,71529762,71529713,71529714,50,-,CGGACCAATCCCCAGTGATTATGCAAGACAGCGGACCAATCAGCTCCGCC,5' UTR,2,71528113,71533980,5868,1,Dlx1-201,1600,Dlx1-201;Dlx1-202;Dlx1-205;Dlx1-204;Dlx1-203;Dlx1-206;Metap1d-201;Metap1d-205;Metap1d-203,Dlx1;Dlx1;Dlx1;Dlx1;Dlx1;Dlx1;Metap1d;Metap1d;Metap1d,0;0;0;0;0;-1018;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,12,36,13390,ENSMUSG00000041911,conserved gene and region,2,71529239,71529746,508,*,508,60,0.708661417,0.956355307,0.118110236,1.62E-50,CpGisland,TRUE,U3,Pr-B
6186,cg19972859,-0.00000127,0.000000845,-1.508704229,0.132392859,loss,ns,0.000000398,0.00000144,0.276968989,0.781988507,pos,ns,0.00052335,0.000420569,1.244385331,0.214297783,pos,ns,0.668982321,-0.0000245,0.0000145,-1.691434055,0.091758901,neg,ns,0.027410669,Pura,Pura_Exon,18,36287350,36287399,36287398,36287399,50,+,GCGGGTGGACATCCAGAACAAGCGCTTCTACCTGGACGTGAAGCAGAACG,"Exon (Pura-201/Pura, exon 2 of 2)",18,36281097,36292535,11439,1,Pura-201,6253,Pura-201,Pura,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,13,19,19290,ENSMUSG00000043991,conserved gene and region,18,36286687,36288029,1343,*,1343,129,0.68652271,0.823041768,0.096053611,4.14E-95,CpGisland,TRUE,U1,Pr-A
14803,cg01197840,0.000128763,0.0000137,9.395908461,1.29E-18,gain,yes,0.00000645,0.0000233,0.276846448,0.782082516,pos,ns,0.041870238,0.006820696,6.138704559,2.54E-09,pos,ns,8.594866514,-0.00053754,0.000234563,-2.291664609,0.022595247,neg,ns,0.545256288,Myo18a,Myo18a_Intron,11,77830798,77830847,77830846,77830847,50,-,GTTACCGCTCTGAACCAAAATCAATGTGCGTTACTCAAACAAGCAGATCG,"Intron (Myo18a-208/Myo18a, intron 19 of 41)",11,77763246,77865980,102735,1,Myo18a-208,67552,Myo18a-208;Myo18a-209;Myo18a-207;Myo18a-201;Myo18a-203;Myo18a-222;Myo18a-223;Myo18a-211;Myo18a-205;Myo18a-210;Myo18a-224;Myo18a-202;Myo18a-220;Myo18a-221;Myo18a-218,Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a,0;0;0;0;0;0;0;0;0;0;0;0;0;0;6244,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,18,360013,ENSMUSG00000000631,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19004,cg17084037,-0.000000986,0.00000406,-0.243163617,0.808039471,loss,ns,-0.00000191,0.00000689,-0.276812421,0.78210862,neg,ns,0.001519909,0.002018322,0.75305596,0.451987788,pos,ns,0.344873299,-0.000101459,0.0000694,-1.461740361,0.144825301,neg,ns,0.897234816,Med1,Med1_Exon,11,98158109,98158158,98158109,98158110,50,+,CGAGCCAATGGTAGACCCCCCGTTCCCTGTGATTTGCAACAAACTGGTAA,"Exon (Med1-203/Med1, exon 17 of 17)",11,98152154,98193260,41107,2,Med1-202,35102,Med1-202;Med1-203;Med1-204;Med1-201;Med1-207,Med1;Med1;Med1;Med1;Med1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,13,19014,ENSMUSG00000018160,conserved gene but different region,11,98158040,98158130,91,*,91,8,0.648351648,0.912280702,0.087912088,0.0000058,CpGisland,TRUE,U10,Tr-S
7515,cg03280886,-0.0000317,0.00000907,-3.496533811,0.000540186,loss,ns,-0.00000426,0.0000154,-0.276726948,0.782174195,neg,ns,-0.011133919,0.004513727,-2.466679969,0.014177761,neg,ns,1.848392357,0.0000804,0.000155227,0.517667266,0.605059648,pos,ns,0.680224327,Dnajb5,Dnajb5_Promoter,4,42947151,42947200,42947151,42947152,50,+,CGGTTCCCTCAGGGTGAGGAAATGAGGGACACCTAGGGTTATGACGTCTC,Promoter (2-3kb),4,42949814,42959425,9612,1,Dnajb5-201,-2614,Dnajb5-201;Dnajb5-203;Dnajb5-205;Dnajb5-206;Dnajb5-202;Dnajb5-207;Phf24-202;Phf24-203;Phf24-201,Dnajb5;Dnajb5;Dnajb5;Dnajb5;Dnajb5;Dnajb5;Phf24;Phf24;Phf24,0;0;0;0;0;0;30457;29900;29881,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,8,56323,ENSMUSG00000036052,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23583,cg10718356,-0.00000135,0.00000116,-1.1669219,0.244138759,loss,ns,0.000000543,0.00000196,0.276639818,0.782241042,pos,ns,0.000864701,0.00057512,1.503514758,0.1337244,pos,ns,0.873789343,-0.0000116,0.0000198,-0.586809066,0.557759034,neg,ns,0.030375163,Cbx4,Cbx4_Promoter,11,119085403,119085452,119085403,119085404,50,+,CGGTGGAGGGAAAGGGGAAAGGAGCCATTTTCTGCTGCACATCAGTCAGT,Promoter (<=1kb),11,119077573,119086221,8649,2,Cbx4-201,769,Cbx4-201;Cbx4-202,Cbx4;Cbx4,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,2,2,12418,ENSMUSG00000039989,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
26872,cg04423188,-0.00000524,0.00000305,-1.714259475,0.08748059,loss,ns,0.00000144,0.00000519,0.276585851,0.782282447,pos,ns,0.00022571,0.001520195,0.148474514,0.882064831,pos,ns,0.054499494,-0.0000201,0.0000523,-0.384800237,0.700649282,neg,ns,0.955403245,Prdm16,Prdm16_Exon,4,154342013,154342062,154342061,154342062,50,-,GGAGGAGGTAGTGCTGAACATCTGGCCACAGTCCTTGCACTTGATCTGCG,"Exon (Prdm16-201/Prdm16, exon 9 of 17)",4,154316125,154636866,320742,2,Prdm16-201,294804,Prdm16-201;Prdm16-202;Prdm16-203;Prdm16-204;Prdm16-205;Prdm16-206;Prdm16-210;Prdm16-208,Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16,0;0;0;0;0;0;0;6395,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,32,70673,ENSMUSG00000039410,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10052,cg11936171,-0.00000188,0.00000152,-1.23924844,0.216190904,loss,ns,-0.000000712,0.00000258,-0.27657583,0.782290135,neg,ns,0.001224546,0.000754448,1.623101167,0.105584211,pos,ns,0.976401023,-0.0000394,0.0000259,-1.51846939,0.129915269,neg,ns,0.054795479,Maml3,Maml3_fiveUTR,3,52104508,52104557,52104556,52104557,50,-,AATTCCAGGAGATTTCCGGTGGTTGGCAAGCATTTTCTCCCTACATACCG,Promoter (<=1kb),3,51685907,52105076,419170,2,Maml3-202,519,Maml3-202,Maml3,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,14,32,433586,ENSMUSG00000061143,conserved gene and region,3,52104524,52104648,125,*,125,14,0.592,1.340996169,0.112,1.05E-11,CpGisland,TRUE,U1,Pr-A
6707,cg13040099,0.000146894,0.0000227,6.456988196,4.12E-10,gain,yes,-0.0000107,0.0000386,-0.276570306,0.782294374,neg,ns,0.099838641,0.011322754,8.817522909,8.61E-17,pos,yes,16.06479015,-0.002223871,0.000389389,-5.711186175,2.63E-08,neg,yes,0.635521072,Dennd1a,Dennd1a_Intron,2,38143095,38143144,38143095,38143096,50,+,CGTCTCCTCTTGGGACACAAGCCTAGCAGATGTGATAAAAACTGTGTCAG,"Intron (Dennd1a-201/Dennd1a, intron 3 of 21)",2,37798991,38287375,488385,2,Dennd1a-201,144231,Dennd1a-201;Dennd1a-207;Dennd1a-210;Dennd1a-204;Dennd1a-202;Dennd1a-209;Dennd1a-208,Dennd1a;Dennd1a;Dennd1a;Dennd1a;Dennd1a;Dennd1a;Dennd1a,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,46,227801,ENSMUSG00000035392,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8845,cg03910721,-0.0000216,0.0000054,-4.009663801,0.0000762,loss,ns,0.00000254,0.00000917,0.276540658,0.782317121,pos,ns,-0.003388876,0.002686123,-1.261623852,0.208032644,neg,ns,0.681868511,-0.000139349,0.0000924,-1.508505656,0.132443619,neg,ns,0.904209091,Gm18112,Gm18112_Intergenic_downstream,12,46021416,46021465,46021416,46021417,50,-,CGTGGATGGATAGTACAAAGAAAATGGAGTATAAATCTTTTGTTTCAAAA,Distal Intergenic,12,46269750,46273884,4135,2,Gm18112-201,252468,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,5,100416440,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22681,cg04626565,0.00000832,0.00000326,2.55480511,0.011102269,gain,ns,0.00000153,0.00000553,0.276452048,0.782385106,pos,ns,0.003431328,0.001620895,2.116933606,0.035061803,pos,ns,1.455165752,-0.000105664,0.0000557,-1.895568689,0.058947074,neg,ns,0.052389485,Maf,Maf_Exon,8,115705857,115705906,115705857,115705858,50,+,CGCACCAGCCTGGAGATCTCCTGCTTGAGGTGGTCGACTTGCTGCAGCAG,"Exon (Maf-201/Maf, exon 1 of 3)",8,115682942,115707096,24155,2,Maf-201,1190,Maf-201;Maf-202,Maf;Maf,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,23,17132,ENSMUSG00000055435,conserved gene and region,8,115705629,115705858,230,*,230,18,0.604347826,0.8625,0.07826087,4.01E-12,CpGisland,TRUE,U1,Pr-A
27030,cg02831781,0.00000375,0.0000103,0.36226945,0.717397522,gain,ns,-0.00000486,0.0000176,-0.276220293,0.782562928,neg,ns,-0.003489915,0.00514975,-0.677686256,0.49847611,neg,ns,0.302355651,0.0000878,0.000177099,0.49577243,0.620406261,pos,ns,0.681217848,Dlgap4,Dlgap4_fiveUTR,2,156748040,156748089,156748040,156748041,50,+,CGGTTCCCACCTCTCGGAGGACAACGGACCCAAAGCGATCGATGTGATGG,5' UTR,2,156613705,156764361,150657,1,Dlgap4-205,134335,Dlgap4-205;Dlgap4-212;Dlgap4-206;Dlgap4-202;Dlgap4-210;Dlgap4-209;Dlgap4-204;Dlgap4-208;Dlgap4-211;Dlgap4-214;Dlgap4-213;Dlgap4-201;Dlgap4-203,Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,10,17,228836,ENSMUSG00000061689,conserved gene and region,2,156747941,156748091,151,*,151,11,0.529801325,1.040726817,0.072847682,0.000000299,CpGisland,TRUE,NA,NRS
397,cg15723635,0.000015,0.0000105,1.430180071,0.153672452,gain,ns,0.00000491,0.0000178,0.276170279,0.782601305,pos,ns,0.030365643,0.005210487,5.827794094,1.41E-08,pos,ns,7.851523424,-0.000734605,0.000179188,-4.099630208,0.0000529,neg,ns,0.902218413,Zfhx4,Zfhx4_Intron,3,5358047,5358096,5358047,5358048,50,-,CGCAGTTAAGAGTCCTATGGATCTCTTAATTGAAAGTTAATTTTAAATCA,"Intron (Zfhx4-203/Zfhx4, intron 4 of 10)",3,5218526,5413165,194640,1,Zfhx4-203,139521,Zfhx4-203;Zfhx4-201;Zfhx4-205,Zfhx4;Zfhx4;Zfhx4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,27,77,80892,ENSMUSG00000025255,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26773,cg13748854,0.0000229,0.00000768,2.977156322,0.003138653,gain,ns,0.0000036,0.000013,0.276143677,0.782621718,pos,ns,-0.001217548,0.003820026,-0.318727599,0.750147723,neg,ns,0.124853205,-0.000143645,0.00013137,-1.093433572,0.275052414,neg,ns,0.649866315,Iqsec2,Iqsec2_Exon,X,152222257,152222306,152222305,152222306,50,-,GCTGGGCTCCTTGCTTGTGGGTGCAGGGAAGCGGGGGCGGCGTAACAGCG,"Exon (Iqsec2-207/Iqsec2, exon 14 of 15)",20,152144268,152225235,80968,1,Iqsec2-207,77989,Iqsec2-207;Iqsec2-202;Iqsec2-203;Iqsec2-201,Iqsec2;Iqsec2;Iqsec2;Iqsec2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,16,245666,ENSMUSG00000041115,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20077,cg20221627,8.93E-08,0.00000219,0.040751078,0.967520573,gain,ns,0.00000103,0.00000372,0.275919598,0.782793665,pos,ns,0.000246673,0.001090665,0.226167631,0.821220092,pos,ns,0.085540434,-0.00000434,0.0000375,-0.115595468,0.908047997,neg,ns,0.923297505,Stim1,Stim1_threeUTR,7,102435382,102435431,102435430,102435431,50,+,AGGGATTTGACCCATTCCGATTCGGAGTCCTCCCTCCACATGAGTGACCG,3' UTR,7,102267806,102437318,169513,1,Stim1-201,167576,Stim1-201;Stim1-202;Stim1-209;Stim1-207;Stim1-204,Stim1;Stim1;Stim1;Stim1;Stim1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,6,20866,ENSMUSG00000030987,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7430,cg12048181,0.0000411,0.00000595,6.908711401,2.78E-11,gain,yes,0.00000279,0.0000101,0.275878666,0.782825075,pos,ns,0.006528569,0.002963178,2.203232106,0.028313676,pos,ns,1.548003739,-0.0000666,0.000101903,-0.653512269,0.513910508,neg,ns,0.148082856,Ostm1,Ostm1_Intron,10,42631201,42631250,42631201,42631202,50,+,CGTGAATGAGCCTTGACTCACACAAAAACACTCTGCAGAAGTTCAGAGCT,"Intron (Ostm1-202/Ostm1, intron 2 of 5)",10,42583835,42698323,114489,1,Ostm1-202,47366,Ostm1-202;Ostm1-203,Ostm1;Ostm1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,21,22,14628,ENSMUSG00000038280,conserved gene and region,10,42631039,42631215,177,*,177,12,0.559322034,0.867647059,0.06779661,0.000000157,CpGisland,TRUE,U13,Hc-P
12397,cg23940242,0.0000471,0.00000729,6.451713868,4.25E-10,gain,yes,-0.00000342,0.0000124,-0.275872752,0.782829613,neg,ns,0.01298198,0.003630022,3.576281331,0.00040416,pos,ns,3.393446406,-0.000404435,0.000124836,-3.239726707,0.001326364,neg,ns,0.075157843,Fign,Fign_fiveUTR,2,64096998,64097047,64097046,64097047,50,-,TTTTCCTCTCAGCTATCAAATGTCACTGCCTTGAAACGTGGGCCCTTTCG,Promoter (<=1kb),2,63971507,64098012,126506,2,Fign-203,965,Fign-203;Fign-201;Fign-202;Fign-204,Fign;Fign;Fign;Fign,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,84,60344,ENSMUSG00000075324,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
19690,cg02594577,0.00000396,0.00000182,2.172958248,0.030540515,gain,ns,-0.000000854,0.0000031,-0.275730251,0.782938968,neg,ns,0.000428041,0.000907543,0.471647664,0.63751008,pos,ns,0.195512944,0.000018,0.0000312,0.575208353,0.565567645,pos,ns,0.028123591,Stag1,Stag1_fiveUTR,9,100643594,100643643,100643642,100643643,50,-,CCAAGTCTGCAGCGGCGCCATTGGCGTGTGGAAAATGCCACCAGATGGCG,Promoter (<=1kb),9,100643600,100739597,95998,1,Stag1-210,0,Stag1-205;Stag1-213;Stag1-206;Stag1-210;Stag1-204;Stag1-212;Stag1-201;Stag1-208;Stag1-216;Stag1-203;Stag1-207,Stag1;Stag1;Stag1;Stag1;Stag1;Stag1;Stag1;Stag1;Stag1;Stag1;Stag1,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,6,15,20842,ENSMUSG00000037286,conserved gene and region,9,100642808,100644342,1535,*,1535,206,0.725732899,1.021439208,0.134201954,3.49E-185,CpGisland,TRUE,U1,Pr-A
7218,cg07957369,0.0000674,0.0000127,5.300465974,0.00000022,gain,yes,0.00000596,0.0000216,0.275704122,0.78295902,pos,ns,0.015764384,0.006328761,2.490911566,0.013264556,pos,ns,1.877307278,-0.000174959,0.000217646,-0.80386934,0.422088423,neg,ns,0.559021369,Cntfr,Cntfr_Exon,4,41663602,41663651,41663650,41663651,50,-,GAAGCCCTTGGGGTAAGTGTTGGAGCGGCAGCTGAGCACAGGCTCCCGCG,"Exon (Cntfr-203/Cntfr, exon 5 of 10)",4,41657498,41695442,37945,2,Cntfr-203,31791,Cntfr-203;Cntfr-204;Cntfr-206,Cntfr;Cntfr;Cntfr,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,12,12804,ENSMUSG00000028444,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15999,cg14567528,0.0000908,0.0000176,5.152851705,0.000000458,gain,yes,0.00000825,0.0000299,0.27559077,0.78304601,pos,ns,0.035520665,0.00877369,4.048543235,0.0000652,pos,ns,4.186019887,-0.000773358,0.000301726,-2.563110078,0.010845662,neg,ns,0.69317042,Epha5,Epha5_Exon,5,84117586,84117635,84117586,84117587,50,-,CGCACAGGGAAGAAGCCCTCCCACAGCCACATTCGCAGCAACTGAAAAGC,"Exon (Epha5-201/Epha5, exon 7 of 16)",5,84054761,84416921,362161,2,Epha5-201,299286,Epha5-201;Epha5-205;Epha5-206;Epha5-202;Epha5-203;Epha5-204;Epha5-209,Epha5;Epha5;Epha5;Epha5;Epha5;Epha5;Epha5,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,9,13839,ENSMUSG00000029245,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6127,cg23108132,0.0000262,0.0000098,2.675316738,0.007862347,gain,ns,0.00000459,0.0000166,0.275573269,0.783059441,pos,ns,0.00700864,0.004876931,1.437100372,0.151698003,pos,ns,0.819020136,-0.00025087,0.000167717,-1.495793183,0.135724881,neg,ns,0.442666455,Tenm2,Tenm2_Exon,11,36106794,36106843,36106842,36106843,50,+,GGCAGACACACTGCCAGCTGTTCTGACCCAGTGTGCATCTCCCGTTACCG,"Exon (Tenm2-202/Tenm2, exon 15 of 31)",11,36006656,37235882,1229227,2,Tenm2-202,1129039,Tenm2-202;Tenm2-208;Tenm2-201,Tenm2;Tenm2;Tenm2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,21,84,23964,ENSMUSG00000049336,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12056,cg20587691,-0.00000359,0.00000265,-1.353929,0.176745235,loss,ns,-0.00000124,0.00000451,-0.275563695,0.783066788,neg,ns,-0.000295189,0.001320189,-0.223595591,0.82321927,neg,ns,0.084484472,0.00000949,0.0000454,0.209086809,0.834517798,pos,ns,0.939533454,Efna5,Efna5_Exon,17,62613307,62613356,62613355,62613356,50,-,CATACTAACCTGCTGGTTCTAATGAATTTTCTACTTTGTCGTTAACATCG,"Exon (Efna5-201/Efna5, exon 4 of 5)",17,62604184,62881317,277134,2,Efna5-201,267961,Efna5-201;Efna5-202,Efna5;Efna5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,21,13640,ENSMUSG00000048915,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23127,cg23842237,-0.00000658,0.0000043,-1.529590488,0.127137867,loss,ns,0.00000201,0.00000731,0.27540558,0.783188137,pos,ns,-0.000703808,0.002140756,-0.328766168,0.742554419,neg,ns,0.129271713,0.00000213,0.0000736,0.028870595,0.976986375,pos,ns,0.892399888,Rnf220,Rnf220_Intron,4,117315111,117315160,117315111,117315112,50,-,CGGATTTGAATGTATGATGAATCAGTTTGCATTACATGTTCGTAAGTCAT,"Intron (Rnf220-201/Rnf220, intron 2 of 14)",4,117271463,117497052,225590,2,Rnf220-201,181892,Rnf220-201;Rnf220-202;Rnf220-207,Rnf220;Rnf220;Rnf220,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,4,117314991,117315152,162,*,162,10,0.5,0.995085995,0.061728395,0.0000055,CpGisland,TRUE,U13,Hc-P
10067,cg13472965,0.0000859,0.0000195,4.413205812,0.0000141,gain,ns,0.00000911,0.0000331,0.27535452,0.783227325,pos,ns,0.062173518,0.009692476,6.414616503,5.27E-10,pos,ns,9.278224321,-0.001460796,0.000333323,-4.382518436,0.0000161,neg,ns,0.460820434,Dhx15,Dhx15_threeUTR,5,52150302,52150351,52150350,52150351,50,-,ACTTCTAAAAGGAATGTCAACAATTACAACGATCATGCATACCATGGTCG,3' UTR,5,52150203,52190514,40312,2,Dhx15-201,40163,Dhx15-201;Dhx15-207;Dhx15-206;Dhx15-205,Dhx15;Dhx15;Dhx15;Dhx15,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,14,13204,ENSMUSG00000029169,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1235,cg25497826,0.0000209,0.00000688,3.031213659,0.00264112,gain,ns,0.00000322,0.0000117,0.275205696,0.783341548,pos,ns,0.00640168,0.003424085,1.869603145,0.062481489,pos,ns,1.204248633,-0.000093,0.000117754,-0.790161884,0.430037245,neg,ns,0.619122336,Bcor,Bcor_Intron,X,12085604,12085653,12085604,12085605,50,+,CGCCATGATTTAAAAGTGTGTGTTTGCAGACACTCGCATATATTTTAATG,"Intron (Bcor-201/Bcor, intron 1 of 13)",20,12036743,12160355,123613,2,Bcor-201,74702,Bcor-201;Bcor-207;Bcor-205,Bcor;Bcor;Bcor,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,56,74,71458,ENSMUSG00000040363,conserved gene and region,X,12085326,12085682,357,*,357,18,0.546218487,0.675994109,0.050420168,5.80E-09,CpGisland,TRUE,U13,Hc-P
11547,cg00290109,0.0000182,0.0000148,1.230480702,0.219450011,gain,ns,0.00000693,0.0000252,0.275118239,0.783408674,pos,ns,0.013860139,0.007374566,1.879451345,0.061120758,pos,ns,1.213811271,-0.000253129,0.000253611,-0.998101976,0.319008352,neg,ns,0.736432968,Vax1,Vax1_Intergenic_downstream,19,59133300,59133349,59133300,59133301,50,-,CGCTGACATCGGAGACAATTAGACAGTGTCAGCCAATTGTTTTTAGCCAG,Distal Intergenic,19,59166598,59166980,383,2,Vax1-202,33680,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,18,22326,ENSMUSG00000006270,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5937,cg15578982,0.0000921,0.00000797,11.55462045,6.38E-26,gain,yes,-0.00000373,0.0000135,-0.275072482,0.783443795,neg,ns,0.013119841,0.003968604,3.305907985,0.001057818,pos,ns,2.97558915,-0.000100153,0.00013648,-0.733829172,0.463607487,neg,ns,0.475750514,Cdon,Cdon_Intron,9,35424683,35424732,35424683,35424684,50,+,CGAAGCGGCTCCAAGACCCTGGGAATTCCATTAGCGAGCACCTGAGGAAT,"Intron (Cdon-205/Cdon, intron 1 of 4)",9,35421128,35455365,34238,1,Cdon-205,3555,Cdon-205;Cdon-204;Cdon-202;Cdon-206,Cdon;Cdon;Cdon;Cdon,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,3,57810,ENSMUSG00000038119,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18666,cg06330691,0.0000512,0.00000536,9.567515897,3.60E-19,gain,yes,-0.0000025,0.0000091,-0.274908552,0.783569623,neg,ns,0.012016849,0.002666043,4.507371912,0.00000932,pos,ns,5.030785216,-0.000280137,0.0000917,-3.055424065,0.002442708,neg,ns,0.090925504,Tenm4,Tenm4_Exon,7,96644105,96644154,96644105,96644106,50,-,CGGTGTGGCCCAGCCAACCCCGGACTCAGACTCTGAGGAAGAGTTTGTCC,"Exon (Tenm4-201/Tenm4, exon 7 of 33)",7,96171246,96908569,737324,1,Tenm4-201,472859,Tenm4-201;Tenm4-203;Tenm4-202;Tenm4-207,Tenm4;Tenm4;Tenm4;Tenm4,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,17,26,23966,ENSMUSG00000048078,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26556,cg23787892,-0.000000744,0.00000143,-0.518757199,0.604300173,loss,ns,0.000000669,0.00000244,0.274683982,0.783742005,pos,ns,-0.000848214,0.000713716,-1.188447309,0.235566871,neg,ns,0.627885787,0.0000252,0.0000245,1.024739341,0.306285154,pos,ns,0.964581644,Casz1,Casz1_Intron,4,148916090,148916139,148916138,148916139,50,+,TGGTCAGAAATTGTCAGCTTTCAGATCTAATTTACCTGACGGCCCCTGCG,"Intron (Casz1-201/Casz1, intron 4 of 15)",4,148804429,148945129,140701,1,Casz1-201,111661,Casz1-201;Casz1-202;Casz1-206,Casz1;Casz1;Casz1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,94,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15677,cg08312380,0.00000141,0.00000114,1.243525569,0.214613796,gain,ns,-0.000000531,0.00000193,-0.274646313,0.783770921,neg,ns,0.000595975,0.000566013,1.052936473,0.293190125,pos,ns,0.532850661,0.0000261,0.0000195,1.338782272,0.181622488,pos,ns,0.969224378,Zdhhc21,Zdhhc21_threeUTR,4,82806312,82806361,82806360,82806361,50,-,GCCCACCATCCATCTGTTTAGACATGATTGGCAAAGTGGTAGGGAACTCG,3' UTR,4,82798738,82859673,60936,2,Zdhhc21-201,53312,Zdhhc21-201;Zdhhc21-206;Zdhhc21-202,Zdhhc21;Zdhhc21;Zdhhc21,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,3,68268,ENSMUSG00000028403,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26933,cg01143391,0.0000403,0.00000764,5.280945228,0.000000242,gain,yes,-0.00000356,0.000013,-0.274595524,0.78380991,neg,ns,0.002522419,0.003802128,0.663422933,0.507552762,pos,ns,0.294518805,-0.000064,0.000130755,-0.489335437,0.62495029,neg,ns,0.502518746,Ttc34,Ttc34_Intergenic_upstream,4,154793882,154793931,154793882,154793883,50,-,CGGTTGGTGTACTTCAGGTAAATTAGCCTGATTCAAGCTGTCAGCTTGAG,Distal Intergenic,4,154837459,154867125,29667,1,Ttc34-203,-43577,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,6,242800,ENSMUSG00000046637,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10808,cg09393850,-0.00000257,0.0000101,-0.255329164,0.798638196,loss,ns,-0.00000469,0.0000171,-0.274591601,0.783812921,neg,ns,0.020259428,0.00500796,4.045445498,0.000066,pos,ns,4.180564523,-0.000833997,0.000172223,-4.842535176,0.00000203,neg,ns,0.610570717,Adcyap1r1,Adcyap1r1_Exon,6,55491233,55491282,55491233,55491234,50,+,CGTGCAGAAATGCTACTGCAAGCCACAGCGGGCTCAGCAGCACTCTTGCA,"Exon (Adcyap1r1-201/Adcyap1r1, exon 14 of 17)",6,55451978,55498905,46928,1,Adcyap1r1-201,39255,Adcyap1r1-201;Adcyap1r1-202;Adcyap1r1-204;Adcyap1r1-206;Adcyap1r1-208;Adcyap1r1-203,Adcyap1r1;Adcyap1r1;Adcyap1r1;Adcyap1r1;Adcyap1r1;Adcyap1r1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,11517,ENSMUSG00000029778,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18331,cg17731968,-0.0000027,0.00000332,-0.812742039,0.41698969,loss,ns,-0.00000155,0.00000564,-0.274286977,0.784046777,neg,ns,0.001205243,0.001652797,0.729214452,0.466421071,pos,ns,0.331221838,-0.0000154,0.0000568,-0.270254426,0.787144353,neg,ns,0.91386569,Tbca,Tbca_Intron,13,94817130,94817179,94817178,94817179,50,-,CAAAGTGTTTTAGGCTTTCTGAGCAAAGCAACACACATTACGGAGGAACG,"Intron (Tbca-201/Tbca, intron 1 of 3)",13,94788910,94842922,54013,1,Tbca-201,28220,Tbca-201;Tbca-203;Tbca-204,Tbca;Tbca;Tbca,0;0;-555,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,9,21371,ENSMUSG00000042043,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25718,cg07418580,0.0000598,0.00000991,6.037644031,4.47E-09,gain,yes,-0.00000462,0.0000168,-0.274182203,0.784127216,neg,ns,0.015394176,0.004931863,3.121371047,0.001969694,pos,ns,2.705601331,-0.000599397,0.000169606,-3.534047147,0.000471587,neg,ns,0.153659057,Igbp1b,Igbp1b_Intergenic_upstream,6,138708945,138708994,138708993,138708994,50,-,GCTTTCACCTTGGGTGTGTGCTGCCTTCTCACTGAACGGTTAACTATCCG,Distal Intergenic,6,138657089,138658544,1456,2,Igbp1b-201,-50450,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,5,50540,ENSMUSG00000046717,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1166,cg24450217,0.0000136,0.00000327,4.163471492,0.0000407,gain,ns,-0.00000152,0.00000555,-0.274126742,0.784169795,neg,ns,0.004798321,0.001625319,2.952232529,0.003395797,pos,ns,2.469058265,-0.0000501,0.0000559,-0.896621725,0.370616551,neg,ns,0.046900781,Shisa9,Shisa9_Exon,16,11984859,11984908,11984859,11984860,50,+,CGACTTCATCTTCTGCTGCGGGACTTGTGGCTTCCGGTTCTGCTGCACGT,Promoter (<=1kb),16,11984113,11995390,11278,1,Shisa9-204,746,Shisa9-204;Shisa9-206;Shisa9-202;Shisa9-201;Shisa9-203;Shisa9-205,Shisa9;Shisa9;Shisa9;Shisa9;Shisa9;Shisa9,0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,72555,ENSMUSG00000022494,conserved gene and region,16,11984126,11985055,930,*,930,108,0.701075269,0.95067723,0.116129032,1.48E-89,CpGisland,TRUE,U3,Pr-B
19174,cg16416009,-0.00000453,0.00000171,-2.644071923,0.008608353,loss,ns,-0.000000797,0.00000291,-0.274000372,0.784266818,neg,ns,0.000472319,0.000852249,0.554203462,0.579839173,pos,ns,0.236692448,-0.0000114,0.0000293,-0.388471928,0.69793348,neg,ns,0.959880774,Thra,Thra_Exon,11,98763553,98763602,98763601,98763602,50,-,CTCCTGAAGGGGTGCTGCATGGAGATCATGTCCCTGCGGGCGGCTGTCCG,"Exon (Thra-201/Thra, exon 8 of 10)",11,98741811,98769006,27196,1,Thra-201,21742,Nr1d1-201;Thra-201;Thra-202;Thra-203,Nr1d1;Thra;Thra;Thra,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,13,18,21833,ENSMUSG00000058756,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2071,cg18906608,-0.0000141,0.00000381,-3.713598226,0.000242254,loss,ns,0.00000177,0.00000647,0.273928581,0.784321938,pos,ns,-0.000808116,0.001895103,-0.426423341,0.670095352,neg,ns,0.173863394,-0.000141045,0.0000652,-2.16418744,0.031213264,neg,ns,0.937824031,Spaca6,Spaca6_Exon,17,17830832,17830881,17830880,17830881,50,-,AACCTGTGAGGACATCCAGGGTCACAGGTGAGGTTCTTGGGAGCCTGGCG,"Exon (Spaca6-203/Spaca6, exon 1 of 4)",17,17827158,17839071,11914,1,Spaca6-215,3674,Spaca6-215;Spaca6-216;Spaca6-203;Spaca6-212;Spaca6-209;Spaca6-205;Spaca6-201;Spaca6-210;Spaca6-206;Spaca6-204;Spaca6-211,Spaca6;Spaca6;Spaca6;Spaca6;Spaca6;Spaca6;Spaca6;Spaca6;Spaca6;Spaca6;Spaca6,0;0;0;-12;-123;-183;-299;-299;-563;-1154;-2071,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,75202,ENSMUSG00000080316,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7078,cg01485596,0.000095,0.000012,7.930694638,3.99E-14,gain,yes,-0.00000557,0.0000203,-0.273836287,0.784392802,neg,ns,0.021448441,0.005961722,3.597692196,0.000373541,pos,ns,3.427661373,-0.000539851,0.000205023,-2.633124823,0.0088844,neg,ns,0.28074325,Zfpm2,Zfpm2_Intron,15,40825443,40825492,40825443,40825444,50,-,CGGCTTCATTTCATGCTTGATTTACTTTAATTTGTCTGATAGGGCACAAG,"Intron (Zfpm2-202/Zfpm2, intron 3 of 3)",15,40655035,40872723,217689,1,Zfpm2-202,170408,Zfpm2-202;Zfpm2-201;Zfpm2-203,Zfpm2;Zfpm2;Zfpm2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,41,22762,ENSMUSG00000022306,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24967,cg04592375,0.0000042,0.00000325,1.291068807,0.19764175,gain,ns,0.00000151,0.00000553,0.273803103,0.784418281,pos,ns,0.000100913,0.001619083,0.062327342,0.950342321,pos,ns,0.02211993,-0.0000213,0.0000557,-0.383410869,0.701677947,neg,ns,0.95507012,Diaph2,Diaph2_Intron,X,130302658,130302707,130302658,130302659,50,-,CGATATATAAATAAGGTGGTGAGAACTGCCTCAGCAATTCAGTTTCTATT,"Intron (Diaph2-207/Diaph2, intron 25 of 26)",20,129749742,130465831,716090,1,Diaph2-207,552916,Diaph2-207;Diaph2-205;Diaph2-201;Diaph2-206;Diaph2-202,Diaph2;Diaph2;Diaph2;Diaph2;Diaph2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,54004,ENSMUSG00000034480,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22261,cg14375647,-0.00000554,0.00000451,-1.227509212,0.220562562,loss,ns,-0.0000021,0.00000766,-0.27362208,0.784557277,neg,ns,-0.002665527,0.002245307,-1.187155037,0.236075365,neg,ns,0.626949329,0.0000143,0.0000772,0.185563106,0.852908742,pos,ns,0.912086715,Ryr3,Ryr3_Exon,2,112648341,112648390,112648341,112648342,50,-,CGAAGGCTACAAACAGAGCAAGGAACCTCAGGTTGTAGAAATTCCTGGCC,"Exon (Ryr3-211/Ryr3, exon 92 of 104)",2,112631355,113217087,585733,2,Ryr3-210,568697,Ryr3-210;Ryr3-211;Ryr3-201;Ryr3-202;Ryr3-204,Ryr3;Ryr3;Ryr3;Ryr3;Ryr3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,5,20192,ENSMUSG00000057378,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20015,cg02353307,-0.0000236,0.00000486,-4.861832535,0.0000019,loss,ns,0.00000226,0.00000826,0.27346874,0.784675024,pos,ns,-0.003393417,0.002418683,-1.403001856,0.161617043,neg,ns,0.791512843,-0.0000125,0.0000832,-0.150037793,0.880832369,neg,ns,0.936138654,Ephb1,Ephb1_Exon,9,102195010,102195059,102195010,102195011,50,-,CGGACAGAAAGAAGAGACATACAGGCTCCATAATCCTGAAAAGCGAGGTA,"Exon (Ephb1-201/Ephb1, exon 3 of 16)",9,101922128,102354693,432566,2,Ephb1-201,159634,Ephb1-201;Ephb1-202;Ephb1-203,Ephb1;Ephb1;Ephb1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,7,270190,ENSMUSG00000032537,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7561,cg00863740,-0.00000538,0.00000141,-3.8044123,0.000171226,loss,ns,0.000000657,0.0000024,0.273396626,0.7847304,pos,ns,-0.0000993,0.000703648,-0.141077482,0.887900362,neg,ns,0.051635767,-0.00000948,0.0000242,-0.391564715,0.695648881,neg,ns,0.042484497,Cpeb2,Cpeb2_Exon,5,43233932,43233981,43233932,43233933,50,+,CGCAGGACTTCAGTAAGCGGCAGCAGCAGCAGCTGAGCAGCCAGAAGAGG,Promoter (<=1kb),5,43233170,43289723,56554,1,Cpeb2-204,762,Cpeb2-204;Cpeb2-201;Cpeb2-205;Cpeb2-206;Cpeb2-202;Cpeb2-207;Cpeb2-203,Cpeb2;Cpeb2;Cpeb2;Cpeb2;Cpeb2;Cpeb2;Cpeb2,0;0;0;0;0;-1069;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,11,231207,ENSMUSG00000039782,conserved gene and region,5,43233379,43233950,572,*,572,69,0.744755245,0.900109469,0.120629371,9.94E-59,CpGisland,TRUE,U1,Pr-A
19314,cg00046033,-0.00002,0.0000046,-4.351463484,0.0000184,loss,ns,0.00000213,0.00000781,0.273360189,0.78475838,pos,ns,0.003135603,0.00228802,1.370443843,0.171539935,pos,ns,0.765634758,-0.0000696,0.0000787,-0.884685139,0.377012124,neg,ns,0.902043026,Rara,Rara_Intron,11,98969287,98969336,98969287,98969288,50,-,CGGAGCTGAGCAGCTGCCATTTCAATAGAATTAAAGCTTCCGAATGATAA,"Intron (Rara-203/Rara, intron 4 of 8)",11,98927818,98974162,46345,1,Rara-203,41469,Rara-203;Rara-204;Rara-201;Rara-207;Rara-202,Rara;Rara;Rara;Rara;Rara,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,12,19401,ENSMUSG00000037992,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
23868,cg11787160,0.000156778,0.0000211,7.445863589,9.60E-13,gain,yes,0.00000977,0.0000358,0.273250006,0.784842993,pos,ns,0.039810204,0.010479676,3.79880103,0.000174971,pos,ns,3.757034645,-0.001262638,0.000360395,-3.503481707,0.000526814,neg,ns,0.308862294,Dtx1,Dtx1_Exon,5,120694960,120695009,120695008,120695009,50,-,GGTGCTGCTTCTCGTAGGCGTTCTGGATGGTGATGCAGATGTCCATATCG,"Exon (Dtx1-201/Dtx1, exon 3 of 10)",5,120680202,120711927,31726,2,Dtx1-201,16918,Dtx1-201;Dtx1-204;Dtx1-202,Dtx1;Dtx1;Dtx1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,14357,ENSMUSG00000029603,conserved gene and region,5,120694936,120695104,169,*,169,23,0.644970414,1.309636119,0.136094675,3.30E-21,CpGisland,TRUE,U13,Hc-P
1380,cg16717917,-0.0000221,0.00000553,-3.994942963,0.0000809,loss,ns,-0.00000257,0.0000094,-0.273203425,0.784878764,neg,ns,-0.001941901,0.002753191,-0.705327284,0.48113622,neg,ns,0.317731948,-0.0000884,0.0000947,-0.933237822,0.351423488,neg,ns,0.946864471,Cadps,Cadps_Intron,14,12507390,12507439,12507390,12507391,50,+,CGAAGACACAGAAAAATTTATGTATCCCTGCTGGTCGGTCTCCAAAACTA,"Intron (Cadps-210/Cadps, intron 12 of 28)",14,12372563,12823053,450491,2,Cadps-210,315614,Cadps-210;Cadps-202;Cadps-203;Cadps-204;Cadps-201;Cadps-206,Cadps;Cadps;Cadps;Cadps;Cadps;Cadps,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,34,27062,ENSMUSG00000054423,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27023,cg12282209,0.00000207,0.00000388,0.533836319,0.593837358,gain,ns,-0.0000018,0.00000659,-0.272807726,0.785182657,neg,ns,-0.004172381,0.001931425,-2.160260247,0.031518611,neg,ns,1.501432936,0.0000126,0.0000664,0.189434368,0.84987636,pos,ns,0.922694689,Epb41l1,Epb41l1_Exon,2,156533805,156533854,156533853,156533854,50,-,GGGGCAGCTGCCATGATCCCAGGCCCACAGACGGTGGCCACGGAAATCCG,"Exon (Epb41l1-203/Epb41l1, exon 19 of 23)",2,156420909,156543214,122306,1,Epb41l1-203,112896,Epb41l1-203;Epb41l1-204;Epb41l1-206;Epb41l1-202;Epb41l1-205;Epb41l1-201;Epb41l1-207,Epb41l1;Epb41l1;Epb41l1;Epb41l1;Epb41l1;Epb41l1;Epb41l1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,4,13821,ENSMUSG00000027624,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11781,cg25033328,0.000000757,0.00000152,0.499108072,0.618057251,gain,ns,0.000000703,0.00000258,0.272767739,0.785213368,pos,ns,0.000817075,0.000754622,1.082760577,0.279756182,pos,ns,0.553220308,-0.0000469,0.000026,-1.806383408,0.071828151,neg,ns,0.960904705,Mbnl1,Mbnl1_Intron,3,60614473,60614522,60614521,60614522,50,-,AATAACAACTCAGTAGTGCCTTTATTGTGCATGCTTAGTCTTGTTATTCG,"Intron (Mbnl1-216/Mbnl1, intron 4 of 6)",3,60473074,60621458,148385,1,Mbnl1-216,141399,Mbnl1-216;Mbnl1-211;Mbnl1-201;Mbnl1-202;Mbnl1-203;Mbnl1-218;Mbnl1-219;Mbnl1-214;Mbnl1-207;Mbnl1-205;Mbnl1-212;Mbnl1-210;Mbnl1-215;Mbnl1-223;Mbnl1-206,Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1,0;0;0;0;0;0;0;0;0;0;0;18832;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,36,56758,ENSMUSG00000027763,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13917,cg18861731,0.0000612,0.00000918,6.669850391,1.18E-10,gain,yes,-0.00000425,0.0000156,-0.272757311,0.785221377,neg,ns,-0.001247784,0.004566738,-0.273233036,0.784856025,neg,ns,0.105210004,0.0000607,0.00015705,0.386419135,0.699451372,pos,ns,0.507876584,Slc38a6,Slc38a6_Intron,12,73367835,73367884,73367883,73367884,50,+,CAAATTTAAGGCTCATTTACACATGATGTCACACACGCATTGTCAGCGCG,"Intron (D830013O20Rik-201/D830013O20Rik-201, intron 1 of 2)",12,73344367,73351865,7499,1,Slc38a6-207,23468,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,7,625098,ENSMUSG00000044712,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3654,cg01232138,0.0000194,0.0000056,3.4528294,0.000631857,gain,ns,-0.0000026,0.00000952,-0.272746436,0.78522973,neg,ns,-0.0000804,0.00278939,-0.028823198,0.977024146,neg,ns,0.010094703,0.0000675,0.0000959,0.704094754,0.481902322,pos,ns,0.036219046,Erfl,Erfl_Promoter,7,24949084,24949133,24949084,24949085,50,+,CGCAGCCGTTCTATAAAGTGTCAAGTAATGAATCAATTTCGACTAAATTT,Promoter (4-5kb),7,24927445,24944494,17050,2,Erfl-201,-4590,Erfl-201,Erfl,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,29,36,,NA,mapped to different genes,7,24948874,24949205,332,*,332,30,0.545180723,1.304006284,0.090361446,9.36E-22,CpGisland,TRUE,U13,Hc-P
9753,cg14713220,-0.0000113,0.00000332,-3.402453171,0.000755496,loss,ns,-0.00000154,0.00000564,-0.272705815,0.785260929,neg,ns,0.000165132,0.001652743,0.099913654,0.920477458,pos,ns,0.035986842,-0.000117811,0.0000568,-2.072770158,0.039019751,neg,ns,0.896521126,Trps1,Trps1_Exon,15,50660762,50660811,50660762,50660763,50,-,CGTGCAAAGATGCTGGCATATGCTGCACTGGAAAGGTCCACTGTCACCAT,"Exon (Trps1-202/Trps1, exon 6 of 6)",15,50654752,50889691,234940,2,Trps1-202,228880,Trps1-202;Trps1-206;Trps1-204;Trps1-205;Trps1-207;Trps1-201,Trps1;Trps1;Trps1;Trps1;Trps1;Trps1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,36,83925,ENSMUSG00000038679,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7933,cg03892212,0.0000335,0.00000323,10.34779936,9.44E-22,gain,yes,0.0000015,0.00000549,0.272596351,0.785345004,pos,ns,0.003215831,0.001609035,1.998608957,0.046523661,pos,ns,1.332326122,-0.0000342,0.0000553,-0.617622099,0.537277896,neg,ns,0.08292052,Hif1an,Hif1an_Intron,19,44640309,44640358,44640309,44640310,50,-,CGGCCGCCGGTGAGATATCTCCAAACAGCGCACTAACCACTTTCCATTTT,"Intron (Gm35460-201/Gm35460-201, intron 5 of 6)",19,44562850,44563952,1103,1,Hif1an-202,77508,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,31,319594,ENSMUSG00000036450,conserved gene but different region,19,44640178,44640338,161,*,161,21,0.714285714,1.023305085,0.130434783,6.04E-19,CpGisland,TRUE,U13,Hc-P
5023,cg26620916,0.000000434,0.00000194,0.223710175,0.823130182,gain,ns,-0.000000897,0.00000329,-0.27253517,0.785391996,neg,ns,0.000300234,0.00096474,0.311207332,0.755852178,pos,ns,0.121563131,0.0000135,0.0000332,0.406435722,0.684702914,pos,ns,0.953565568,Nrg1,Nrg1_threeUTR,8,31837654,31837703,31837702,31837703,50,-,AAGGGAGTGGACGTACTGTAGAAGCTGGCCATTACGTAGTTTTGGCAGCG,3' UTR,8,31814551,32009540,194990,2,Nrg1-203,171837,Nrg1-203;Nrg1-202;Nrg1-218;Nrg1-219;Nrg1-213;Nrg1-206;Nrg1-201;Nrg1-214;Nrg1-210;Nrg1-224;Nrg1-231;Nrg1-221;Nrg1-233;Nrg1-208;Nrg1-212;Nrg1-211;Nrg1-205;Nrg1-227;Nrg1-226;Nrg1-209;Nrg1-216;Nrg1-217;Nrg1-232;Nrg1-223;Nrg1-220;Nrg1-225;Nrg1-230;Nrg1-204;Nrg1-229;Nrg1-228,Nrg1;Nrg1;Nrg1;Nrg1;Nrg1;Nrg1;Nrg1;Nrg1;Nrg1;Nrg1;Nrg1;Nrg1;Nrg1;Nrg1;Nrg1;Nrg1;Nrg1;Nrg1;Nrg1;Nrg1;Nrg1;Nrg1;Nrg1;Nrg1;Nrg1;Nrg1;Nrg1;Nrg1;Nrg1;Nrg1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,5,211323,ENSMUSG00000062991,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18120,cg25431718,0.00000824,0.0000115,0.716451302,0.47425211,gain,ns,0.00000532,0.0000195,0.272533558,0.785393234,pos,ns,0.02376891,0.005722538,4.153561298,0.0000424,pos,ns,4.372947683,-0.0008113,0.000196798,-4.122508724,0.0000482,neg,ns,0.708183953,Gnao1,Gnao1_threeUTR,8,93967043,93967092,93967043,93967044,50,+,CGGCTTGTACTGACCTCTTGTCCTGTATAGCAACCTATTTGGTAATGATT,3' UTR,8,93810838,93969388,158551,1,Gnao1-201,156205,Amfr-201;Gnao1-201;Gnao1-203;Gnao1-204;Gnao1-208;Gnao1-210;Gnao1-211;Gnao1-212,Amfr;Gnao1;Gnao1;Gnao1;Gnao1;Gnao1;Gnao1;Gnao1,45750;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,5,13,14681,ENSMUSG00000031748,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26728,cg18742617,-0.00000541,0.000006,-0.901493765,0.3680257,loss,ns,-0.00000278,0.0000102,-0.272501994,0.785417478,neg,ns,0.003109222,0.002984991,1.041618554,0.298400213,pos,ns,0.525200871,-0.000151681,0.000102654,-1.477605441,0.140528637,neg,ns,0.67332844,Huwe1,Huwe1_Exon,X,151906359,151906408,151906407,151906408,50,-,AGAAGGTGAGAGTGCCGAGGCCAGAAAGGCCTCCCTTCTTGCCCTGCACG,"Exon (Huwe1-201/Huwe1, exon 52 of 83)",20,151803327,151935417,132091,1,Huwe1-201,103032,Huwe1-201;Huwe1-202;Huwe1-219;Huwe1-208;Huwe1-215,Huwe1;Huwe1;Huwe1;Huwe1;Huwe1,0;0;0;-2437;-2437,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,22,28,59026,ENSMUSG00000025261,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19108,cg15981352,-0.0000401,0.0000147,-2.728238566,0.006730561,loss,ns,0.0000068,0.000025,0.272404434,0.785492415,pos,ns,-0.008378809,0.00731423,-1.14554892,0.25286541,neg,ns,0.597110575,0.000126065,0.000251536,0.501182066,0.616598686,pos,ns,0.67087862,Gm49017,Gm49017_Intergenic_downstream,14,98449625,98449674,98449673,98449674,50,+,TGTTGCTTTAATTCTGAGGCAGCCAGAATGATTAAACTGAATCTTAATCG,Distal Intergenic,14,98519416,98519700,285,2,Gm49017-201,70026,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,11,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10230,cg16986847,-0.0000122,0.00000489,-2.492551184,0.013204695,loss,ns,-0.00000226,0.00000831,-0.272357041,0.785528818,neg,ns,0.001356144,0.002433256,0.557336897,0.577699463,pos,ns,0.238298036,0.000096,0.0000837,1.146644442,0.252412862,pos,ns,0.92045572,Tcf7,Tcf7_Intron,11,52255104,52255153,52255104,52255105,50,-,CGGACCACACCAATCCGTCTGCTGGTTGAGGCCAAAGCGAGCACGGCATT,"Intron (Tcf7-201/Tcf7, intron 9 of 9)",11,52252371,52282571,30201,2,Tcf7-201,27418,Tcf7-201;Tcf7-202;Tcf7-203,Tcf7;Tcf7;Tcf7,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,8,21414,ENSMUSG00000000782,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5229,cg19111707,0.00000737,0.00000841,0.875848655,0.381790453,gain,ns,0.00000389,0.0000143,0.272285698,0.785583619,pos,ns,0.008907674,0.00418691,2.127505182,0.034167161,pos,ns,1.466391112,-0.000282856,0.000143988,-1.96444642,0.050371386,neg,ns,0.721501013,Garnl3,Garnl3_threeUTR,2,33085915,33085964,33085915,33085916,50,+,CGTCTACAGCCTAGGTCTTCCGAGACAGAGCTGGAACAAAAATGCTTCAT,3' UTR,2,32986224,33087253,101030,2,Garnl3-202,1289,Garnl3-202;Garnl3-201;Garnl3-207;Garnl3-208;Garnl3-206;Garnl3-209;Garnl3-205;Garnl3-204;Garnl3-203,Garnl3;Garnl3;Garnl3;Garnl3;Garnl3;Garnl3;Garnl3;Garnl3;Garnl3,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,2,99326,ENSMUSG00000038860,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20083,cg22947612,-0.0000154,0.00000696,-2.208901645,0.027912653,loss,ns,0.00000322,0.0000118,0.272232594,0.785624411,pos,ns,-0.009819758,0.003466399,-2.832840909,0.004915865,neg,ns,2.308400051,0.0000482,0.000119209,0.404046937,0.686456799,pos,ns,0.550520215,Pcbp2,Pcbp2_Exon,15,102485928,102485977,102485976,102485977,50,-,AATCCTCTATTTATCCACAGGACAGGTACAGCACAGGCAGCGACAGTGCG,"Exon (Pcbp2-220/Pcbp2, exon 9 of 12)",15,102470539,102488880,18342,1,Pcbp2-220,15389,Pcbp2-220;Pcbp2-201;Pcbp2-205;Pcbp2-212;Pcbp2-231;Pcbp2-214;Pcbp2-216;Pcbp2-203;Pcbp2-208;Pcbp2-217;Pcbp2-202;Pcbp2-218;Pcbp2-206;Pcbp2-227;Pcbp2-219;Pcbp2-213;Pcbp2-221;Pcbp2-223;Pcbp2-207;Pcbp2-224;Pcbp2-228;Pcbp2-211;Pcbp2-226;Pcbp2-230;Pcbp2-210;Pcbp2-204;Pcbp2-215;Pcbp2-222;Pcbp2-229;Pcbp2-225,Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2,0;0;0;0;0;0;0;0;14860;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,8,18521,ENSMUSG00000056851,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16610,cg15723222,0.0000137,0.00000556,2.465401051,0.014227471,gain,ns,0.00000257,0.00000944,0.272215946,0.785637199,pos,ns,-0.002552026,0.002765913,-0.922670547,0.356896472,neg,ns,0.447457745,0.0000558,0.0000951,0.586388913,0.558040923,pos,ns,0.780702023,Bcas3,Bcas3_Intron,11,85628522,85628571,85628570,85628571,50,-,ATTATCAAAACTCTCCCTGGAGGGAGATGCAACTTTGGCTCGCCTCACCG,"Intron (Bcas3-205/Bcas3, intron 24 of 27)",11,85353167,85826058,472892,1,Bcas3-205,275355,Bcas3-205;Bcas3-206;Bcas3-201;Bcas3-202;Bcas3-216;Bcas3-212;Bcas3-203,Bcas3;Bcas3;Bcas3;Bcas3;Bcas3;Bcas3;Bcas3,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,24,192197,ENSMUSG00000059439,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16051,cg01622394,-0.00000142,0.00000206,-0.692469102,0.489161164,loss,ns,0.000000951,0.00000349,0.27219508,0.785653227,pos,ns,0.000749102,0.001023296,0.732048004,0.464692333,pos,ns,0.332834493,-0.0000141,0.0000352,-0.400717418,0.688904218,neg,ns,0.960936485,Bnc2,Bnc2_Exon,4,84291748,84291797,84291748,84291749,50,+,CGTGCATCTCTTTCAAGTGAACGTTCCTGTAGTGAAGTTTCACACTGTAG,Promoter (<=1kb),4,84275380,84291757,16378,2,Bnc2-218,0,Bnc2-201;Bnc2-202;Bnc2-214;Bnc2-218;Bnc2-215;Bnc2-222;Bnc2-216;Bnc2-213;Bnc2-219;Bnc2-206;Bnc2-211;Bnc2-205;Bnc2-217;Bnc2-207;Bnc2-212,Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,91,242509,ENSMUSG00000028487,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9302,cg12642479,-0.00000227,0.000000634,-3.586327461,0.000389511,loss,ns,-0.000000293,0.00000108,-0.27219177,0.78565577,neg,ns,0.000125351,0.000315373,0.397469158,0.691295064,pos,ns,0.160336544,-0.0000228,0.0000108,-2.106782489,0.035939701,neg,ns,0.020586303,Nr4a3,Nr4a3_Promoter,4,48045103,48045152,48045103,48045104,50,+,CGTCTCGCATTCCAGGCACTCTATGGAGAGGCCGCTAGGGCTCCTGTGGC,Promoter (<=1kb),4,48045153,48086445,41293,1,Nr4a3-201,-1,Nr4a3-201;Nr4a3-204;Nr4a3-203,Nr4a3;Nr4a3;Nr4a3,0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,6,20,18124,ENSMUSG00000028341,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
13901,cg26999207,0.000134255,0.0000129,10.41480618,5.61E-22,gain,yes,-0.00000596,0.0000219,-0.272171727,0.785671166,neg,ns,0.00754494,0.006415883,1.175978533,0.240505759,pos,ns,0.61887452,0.000134032,0.000220642,0.607466558,0.54398604,pos,ns,0.417742214,Sp9,Sp9_threeUTR,2,73276530,73276579,73276578,73276579,50,-,CTGAAAAGGTTCAAGGATGCTCTCTGACTTCTTTGTGATTACTCAGTGCG,3' UTR,2,73271925,73277471,5547,1,Sp9-201,4605,Sp9-201;Sp9-202,Sp9;Sp9,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,10,21,381373,ENSMUSG00000068859,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
15967,cg02841886,-0.00000519,0.00000226,-2.300926451,0.022059143,loss,ns,-0.00000104,0.00000384,-0.272140228,0.785695363,neg,ns,-0.00082194,0.001123679,-0.731471553,0.465043733,neg,ns,0.332506204,-0.0000589,0.0000386,-1.525146151,0.128242182,neg,ns,0.013447958,Rfx1,Rfx1_fiveUTR,8,84066873,84066922,84066873,84066874,50,-,CGGTAGTCGTGGCGACCAAGCAACCCGGCAACGCGAGTCAACAACAACAA,Promoter (<=1kb),8,84066834,84096459,29626,1,Rfx1-204,39,Gm10643-201;Rfx1-204;Rfx1-202;Rfx1-203;Rfx1-201,Gm10643;Rfx1;Rfx1;Rfx1;Rfx1,-1736;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,4,19724,ENSMUSG00000031706,conserved gene and region,8,84066476,84067467,992,*,992,109,0.6875,0.938146924,0.109879032,1.93E-87,CpGisland,TRUE,U1,Pr-A
6636,cg12653763,-0.0000349,0.00000863,-4.043970878,0.0000664,loss,ns,-0.00000399,0.0000147,-0.272061996,0.785755459,neg,ns,-0.002281777,0.004297368,-0.530970681,0.595819294,neg,ns,0.224885438,-0.000141797,0.000147786,-0.959473252,0.338068113,neg,ns,0.851759808,Uri1,Uri1_Intergenic_downstream,7,37887206,37887255,37887254,37887255,50,+,ATGGCAGCAAATTACAGTACTTAGCAGAATTATCACCTAGCAAAGAGGCG,Distal Intergenic,7,37961301,37962528,1228,2,Uri1-203,75273,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,19,27,19777,ENSMUSG00000030421,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10281,cg00422594,-0.000025,0.00000378,-6.627353009,1.51E-10,loss,yes,-0.00000175,0.00000642,-0.271979286,0.785818997,neg,ns,-0.001986003,0.001880045,-1.056359123,0.291626697,neg,ns,0.535172721,0.00000842,0.0000647,0.130221672,0.896475508,pos,ns,0.941184333,Cacnb4,Cacnb4_Exon,2,52451971,52452020,52452019,52452020,50,-,CAAAGATCTTGCCAACTCAAAGATTCTTTCAATTTCACTTTGTACTTCCG,"Exon (Cacnb4-206/Cacnb4, exon 11 of 14)",2,52428320,52676582,248263,2,Cacnb4-206,224562,Cacnb4-206;Cacnb4-202;Cacnb4-203;Cacnb4-201,Cacnb4;Cacnb4;Cacnb4;Cacnb4,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,12298,ENSMUSG00000017412,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22287,cg02758132,0.0000501,0.00000331,15.15486053,3.32E-39,gain,yes,-0.00000153,0.00000562,-0.271875622,0.785898633,neg,ns,0.001155931,0.001645358,0.702540915,0.48286909,pos,ns,0.316170594,0.000111074,0.0000566,1.96299912,0.050540144,pos,ns,0.125011743,Jag2,Jag2_Exon,12,112929028,112929077,112929028,112929029,50,-,CGTAGCTGCAGGGCCCCGTGGGCGTCACCTTGGCCTGGTACTCCTTAAGG,Promoter (<=1kb),12,112907819,112929776,21958,2,Jag2-201,699,Jag2-201;Jag2-208,Jag2;Jag2,0;-580,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,16450,ENSMUSG00000002799,conserved gene and region,12,112928401,112929996,1596,*,1596,249,0.778822055,1.031328828,0.156015038,1.55E-243,CpGisland,TRUE,U3,Pr-B
7654,cg01141741,-0.0000141,0.0000052,-2.719703011,0.006902525,loss,ns,0.0000024,0.00000883,0.271741917,0.786001351,pos,ns,0.002034238,0.002586064,0.78661552,0.432107882,pos,ns,0.364407811,-0.0000345,0.0000889,-0.387534138,0.698626758,neg,ns,0.845881872,Zbtb20,Zbtb20_fiveUTR,16,43577633,43577682,43577633,43577634,50,-,CGCCAAGCCGGGCCTTCCCTGCCTGAACTTTGAAGCTGTTTTGTCTCCAG,5' UTR,16,42907645,43577725,670081,1,Zbtb20-217,669988,Zbtb20-217;Zbtb20-204;Zbtb20-215;Zbtb20-201;Zbtb20-203;Zbtb20-213;Zbtb20-219;Zbtb20-216;Zbtb20-208;Zbtb20-220;Zbtb20-206;Zbtb20-202;Zbtb20-205,Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,8,98,56490,ENSMUSG00000022708,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8057,cg06561106,0.000123796,0.0000149,8.298102647,3.29E-15,gain,yes,-0.00000689,0.0000253,-0.271741098,0.786001979,neg,ns,0.000760987,0.00742515,0.102487711,0.91843583,pos,ns,0.036951182,0.000768171,0.00025535,3.008304083,0.002842398,pos,ns,0.383544964,Pax5,Pax5_Promoter,4,44710669,44710718,44710669,44710670,50,-,CGCTCCCCCGCCGAGCTGGGGTAGCTGATCACTGAGCTGAAACTAAACGT,Promoter (<=1kb),4,44524757,44710487,185731,2,Pax5-201,-231,Pax5-201;Pax5-202;Pax5-203;Pax5-204;Pax5-205;Pax5-207;Pax5-206;Pax5-209;Pax5-210;Pax5-212;Pax5-213;Pax5-214;Pax5-215,Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5,0;0;0;0;0;0;0;0;0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,10,45,18507,ENSMUSG00000014030,conserved gene but different region,4,44710639,44710987,349,*,349,27,0.601719198,0.855004083,0.077363897,8.51E-18,CpGisland,TRUE,NA,NRS
17823,cg03411820,0.0000239,0.0000067,3.561134594,0.000427227,gain,ns,-0.00000309,0.0000114,-0.271656846,0.786066708,neg,ns,0.001381483,0.003337045,0.413983777,0.679172263,pos,ns,0.168020059,-0.0000868,0.000114761,-0.756651376,0.449833408,neg,ns,0.134065816,Irx3,Irx3_Exon,8,91872852,91872901,91872852,91872853,50,+,CGCCGAGCTGCCTGGGAGGAGGTATTAATTGTTGTCAGCCTCCATTTCAC,"Exon (Gm28511-201/Gm28511-201, exon 2 of 2)",8,91798525,91802067,3543,2,Irx3-202,-70785,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,16,36,16373,ENSMUSG00000031734,mapped to different genes,8,91872703,91872933,231,*,231,16,0.632034632,0.698280748,0.069264069,5.08E-10,CpGisland,TRUE,NA,NRS
2991,cg01524627,-0.0000828,0.0000139,-5.956237967,0.000000007,loss,yes,-0.00000641,0.0000236,-0.27151127,0.786178552,neg,ns,-0.017632567,0.006917135,-2.549114369,0.011281216,neg,ns,1.947644071,0.000289819,0.00023788,1.218343001,0.224020061,pos,ns,0.766222369,Tra2b,Tra2b_Exon,16,22259189,22259238,22259237,22259238,50,-,TCCTGAGCTTCAAATACTCATTTATAAAACTTGTCAAATGACGACTTCCG,"Exon (Tra2b-206/Tra2b, exon 2 of 10)",16,22244549,22266005,21457,2,Tra2b-204,6767,Tra2b-204;Tra2b-201;Tra2b-206;Tra2b-202;Tra2b-209;Tra2b-203;Tra2b-207,Tra2b;Tra2b;Tra2b;Tra2b;Tra2b;Tra2b;Tra2b,0;-3942;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,3,20462,ENSMUSG00000022858,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26329,cg08350912,0.0000188,0.00000711,2.641621264,0.008669472,gain,ns,0.00000328,0.0000121,0.271173318,0.786438213,pos,ns,-0.007084075,0.003538581,-2.001953677,0.046160673,neg,ns,1.335727865,-0.0000968,0.000121691,-0.795448812,0.42696111,neg,ns,0.77491713,Kiz,Kiz_Intergenic_upstream,2,146823685,146823734,146823733,146823734,50,-,ATGACATGCAGTGCTTGAAACTGTTTATTTCCAAATTCAGGCCTCCCTCG,Distal Intergenic,2,146855864,146970097,114234,1,Kiz-201,-32179,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,29,228730,ENSMUSG00000074749,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24286,cg27281625,0.0000207,0.00000376,5.492332274,8.27E-08,gain,yes,-0.00000173,0.00000639,-0.271156766,0.786450931,neg,ns,0.005266056,0.00187177,2.813409846,0.005214969,pos,ns,2.282748289,-0.000218867,0.0000644,-3.400141387,0.000761678,neg,ns,0.056320575,Pou3f1,Pou3f1_Intron,4,124478194,124478243,124478242,124478243,50,-,GCTTGTTTGGAAATCCCATTAACGGGTTATTTATGGGGCTCGTGGCTGCG,"Intron (1700057H15Rik-202/1700057H15Rik-202, intron 2 of 3)",4,124656807,124660655,3849,1,Pou3f1-201,-178613,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,43,85,18991,ENSMUSG00000090125,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
8257,cg04394058,-0.0000249,0.00000614,-4.054036021,0.0000637,loss,ns,-0.00000283,0.0000104,-0.271027133,0.78655054,neg,ns,-0.002355914,0.003056073,-0.77089594,0.441355759,neg,ns,0.355211202,-0.0000363,0.000105098,-0.345716818,0.729790034,neg,ns,0.849629429,Zcchc7,Zcchc7_Intron,4,44905651,44905700,44905699,44905700,50,+,GTGAGATGAGTAGCTGTGCCAGCAGGGACCCAAGTCTCCTGGGCTGGCCG,"Intron (Zcchc7-203/Zcchc7, intron 5 of 8)",4,44756568,44932203,175636,1,Zcchc7-203,149083,Zcchc7-203;Zcchc7-207;Zcchc7-205;Zcchc7-201;Zcchc7-202,Zcchc7;Zcchc7;Zcchc7;Zcchc7;Zcchc7,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,27,27,319885,ENSMUSG00000035649,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
9296,cg22100514,0.0000396,0.0000093,4.256111208,0.0000276,gain,ns,-0.00000428,0.0000158,-0.271007276,0.786565798,neg,ns,0.004462326,0.004628279,0.964143609,0.335725425,pos,ns,0.474015767,-0.000112969,0.000159166,-0.709756351,0.478388756,neg,ns,0.624287016,Slit2,Slit2_Intron,5,48009070,48009119,48009070,48009071,50,+,CGAGTAGGCGCAAGCTTTGTTTTGTGTCTAGATGCTTAACCTTAGACACG,"Intron (Slit2-208/Slit2, intron 4 of 35)",5,47983138,48307733,324596,1,Slit2-208,25932,Slit2-208;Slit2-207;Slit2-201;Slit2-202;Slit2-216;Slit2-217;Slit2-221;Slit2-214;Slit2-219,Slit2;Slit2;Slit2;Slit2;Slit2;Slit2;Slit2;Slit2;Slit2,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,11,20563,ENSMUSG00000031558,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5805,cg14471944,-0.0000161,0.0000042,-3.838496553,0.000150055,loss,ns,0.00000193,0.00000714,0.270793537,0.786730042,pos,ns,-0.000958166,0.002091322,-0.458162881,0.647156423,neg,ns,0.188990734,-0.0000479,0.0000719,-0.666122676,0.50582808,neg,ns,0.952524139,Kirrel3,Kirrel3_Intron,9,34838462,34838511,34838462,34838463,50,-,CGAGCCAAATATTGTGATAATTTTAGAGATCATAACTTAATTGAACAATG,"Intron (Kirrel3-202/Kirrel3, intron 2 of 16)",9,34486126,35035280,549155,1,Kirrel3-202,352336,Kirrel3-202;Kirrel3-206;Kirrel3-209;Kirrel3-201;Kirrel3-208;Kirrel3-205,Kirrel3;Kirrel3;Kirrel3;Kirrel3;Kirrel3;Kirrel3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,21,67703,ENSMUSG00000032036,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25773,cg16547543,0.0000839,0.00000655,12.79325623,2.22E-30,gain,yes,0.00000301,0.0000111,0.270741597,0.786769956,pos,ns,0.002359594,0.003262139,0.723327071,0.470024379,pos,ns,0.327879616,0.000161351,0.000112185,1.438260802,0.151368827,pos,ns,0.29272755,Uncx,Uncx_Promoter,5,139539405,139539454,139539405,139539406,50,+,CGGCATATTAAGCACGTTTTAGCAAAGGTGATAAGTCAGTTTTAATTGAA,Promoter (4-5kb),5,139543494,139548179,4686,1,Uncx-201,-4040,Uncx-201;Uncx-202,Uncx;Uncx,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,22,88,22255,ENSMUSG00000029546,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
6565,cg18577843,-0.0000169,0.0000044,-3.846467571,0.000145475,loss,ns,0.00000202,0.00000748,0.270569624,0.786902113,pos,ns,-0.000108215,0.002191715,-0.049374542,0.960652612,neg,ns,0.017433632,-0.0000404,0.0000754,-0.536082541,0.592285946,neg,ns,0.893716506,Zfp536,Zfp536_Intron,7,37743693,37743742,37743693,37743694,50,+,CGGCTGTAAATGAAGACATATAAGCTATATGAAACAATTATGGTAAAATG,"Intron (Zfp536-202/Zfp536, intron 1 of 6)",7,37479104,37769624,290521,2,Zfp536-202,25882,Zfp536-202;Zfp536-201;Zfp536-203;Zfp536-206;Zfp536-209;Zfp536-208;Zfp536-205;Zfp536-207,Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,73,112,243937,ENSMUSG00000043456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14152,cg22619012,0.0000188,0.0000023,8.19389962,6.72E-15,gain,yes,0.00000106,0.0000039,0.270369335,0.78705604,pos,ns,0.003630014,0.00114318,3.175364489,0.001646973,pos,ns,2.783313437,-0.0000547,0.0000393,-1.392010191,0.164917153,neg,ns,0.04575869,Hoxd8,Hoxd8_fiveUTR,2,74705984,74706033,74706032,74706033,50,-,TTACGACCCAGCAAGAGGCCGAGCTGGTACAATATCCTGACTGTAAATCG,5' UTR,2,74704615,74706812,2198,1,Hoxd8-203,1369,Hoxd8-203;Hoxd8-201;Hoxd8-202,Hoxd8;Hoxd8;Hoxd8,0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,9,10,15437,ENSMUSG00000027102,mapped to different genes,2,74704672,74706081,1410,*,1410,198,0.742553192,1.018711777,0.140425532,1.11E-182,CpGisland,TRUE,U13,Hc-P
7278,cg19950214,-0.0000049,0.00000151,-3.253456296,0.001265933,loss,ns,0.000000692,0.00000256,0.270320909,0.787093257,pos,ns,0.000213618,0.000749528,0.285003703,0.775831615,pos,ns,0.110232527,-0.0000299,0.0000258,-1.158830404,0.247417208,neg,ns,0.034575712,Sorl1,Sorl1_Intergenic_downstream,9,41950686,41950735,41950686,41950687,50,+,CGGGCAGATTGGGTTAAACCAAATATTACAATTGCAAGAACTCATCTGGA,Distal Intergenic,9,41969739,41974587,4849,2,Sorl1-202,23852,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,6,20660,ENSMUSG00000049313,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
7092,cg10450897,-0.000000606,0.0000117,-0.051714196,0.958789732,loss,ns,0.00000538,0.0000199,0.270249363,0.787148244,pos,ns,-0.007682557,0.005834147,-1.316826031,0.18886957,neg,ns,0.723838009,0.00039859,0.000200636,1.986634628,0.047843034,pos,ns,0.595797876,Zfpm2,Zfpm2_Intron,15,40913398,40913447,40913398,40913399,50,+,CGCCTCACATTTGCTCTTAGGCAAGCAGTTTAAAAAAGCCCAGTGATTGA,"Intron (Zfpm2-201/Zfpm2, intron 4 of 7)",15,40655035,41104592,449558,1,Zfpm2-201,258363,Zfpm2-201;Zfpm2-203,Zfpm2;Zfpm2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,41,22762,ENSMUSG00000022306,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5578,cg15651067,-0.00000678,0.00000315,-2.152378316,0.03213922,loss,ns,-0.00000144,0.00000535,-0.270033296,0.787314311,neg,ns,0.000217646,0.001567661,0.138835113,0.889670592,pos,ns,0.050770765,-0.00010795,0.0000539,-2.002344846,0.046118378,neg,ns,0.887937107,4931406P16Rik,4931406P16Rik_Exon,7,34285136,34285185,34285136,34285137,50,+,CGCCAAGCAGGAAGCGCCGCTTGTAGTCCATTTTACTGTCCTGGGCACTG,"Exon (4931406P16Rik-202/4931406P16Rik, exon 2 of 14)",7,34236707,34313551,76845,2,4931406P16Rik-202,28366,4931406P16Rik-202;4931406P16Rik-201;4931406P16Rik-210;4931406P16Rik-208;4931406P16Rik-203;4931406P16Rik-204,4931406P16Rik;4931406P16Rik;4931406P16Rik;4931406P16Rik;4931406P16Rik;4931406P16Rik,0;0;0;0;28360;20327,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,8,233103,ENSMUSG00000066571,conserved gene and region,7,34285022,34285154,133,*,133,9,0.69924812,0.561444653,0.067669173,0.00000959,CpGisland,TRUE,U10,Tr-S
21908,cg27197514,0.000000206,0.000000389,0.529039239,0.597156827,gain,ns,0.000000179,0.000000661,0.269932341,0.787391908,pos,ns,-0.000292326,0.000193752,-1.508761998,0.132378095,neg,ns,0.878183874,0.0000111,0.00000666,1.665932689,0.096736936,pos,ns,0.990767781,Rtl1,Rtl1_Exon,12,109710198,109710247,109710198,109710199,50,+,CGTATAGCGTACGCTTTATCTGTGACGTATGTAACACGGTCCACTAACCC,"Exon (Mir411-201/Mir411-201, exon 1 of 1)",12,109589193,109600330,11138,2,Rtl1-201,-109868,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,9,353326,ENSMUSG00000085925,mapped to different genes,12,109710141,109710303,163,*,163,11,0.539877301,0.926614987,0.067484663,0.000000642,CpGisland,TRUE,U11,Tr-P
13954,cg20887518,-0.00000402,0.00000267,-1.504933084,0.133359449,loss,ns,0.00000123,0.00000454,0.269890482,0.787424082,pos,ns,-0.002453981,0.00133109,-1.843587963,0.066197533,neg,ns,1.179158196,0.0000683,0.0000458,1.493006891,0.13645242,pos,ns,0.918919319,Slc6a8,Slc6a8_Exon,X,73676811,73676860,73676811,73676812,50,+,CGCCATGAAGACTGTGCCAATGCCAGCCTGGCCAACCTCACCTGTGACCA,Promoter (<=1kb),20,73676846,73682502,5657,1,Slc6a8-202,0,Slc6a8-201;Slc6a8-204;Slc6a8-206;Slc6a8-203;Slc6a8-205;Slc6a8-210;Slc6a8-213;Slc6a8-202;Slc6a8-209;Slc6a8-212;Slc6a8-207;Slc6a8-211;Slc6a8-208,Slc6a8;Slc6a8;Slc6a8;Slc6a8;Slc6a8;Slc6a8;Slc6a8;Slc6a8;Slc6a8;Slc6a8;Slc6a8;Slc6a8;Slc6a8,0;0;0;0;0;0;0;0;-199;-1294;-2018;-2033;-2033,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,4,102857,ENSMUSG00000019558,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8476,cg17834667,0.00000563,0.00000258,2.182283005,0.029839037,gain,ns,0.00000118,0.00000438,0.269845957,0.787458306,pos,ns,0.002383321,0.001284244,1.855815623,0.064428731,pos,ns,1.190920425,-0.00003,0.0000442,-0.679668806,0.497221389,neg,ns,0.06548333,Lbx1,Lbx1_Intergenic_downstream,19,45223751,45223800,45223751,45223752,50,-,CGTCTGGGTAGGCTATTAAGAGTAATTAGCATCTTTTGCGCATGCAGATT,Distal Intergenic,19,45232684,45235812,3129,2,Lbx1-201,12061,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,30,50,16814,ENSMUSG00000025216,mapped to different genes,19,45223712,45223906,195,*,195,15,0.564102564,0.969827586,0.076923077,4.54E-10,CpGisland,TRUE,U13,Hc-P
12669,cg23942009,-0.0000243,0.00000763,-3.192130475,0.001557181,loss,ns,0.00000349,0.000013,0.269773089,0.787514316,pos,ns,-0.004445531,0.003795411,-1.171291041,0.242381305,neg,ns,0.615500881,0.0000759,0.000130524,0.581551026,0.561291762,pos,ns,0.83581499,Unc80,Unc80_threeUTR,1,66503621,66503670,66503669,66503670,50,-,TCTGAGGAAGGCACTCAGTGGTCTCTGATGTACTATCTACAAAGGCTGCG,3' UTR,1,66468367,66699148,230782,1,Unc80-201,35254,Unc80-201;Unc80-202;Unc80-206,Unc80;Unc80;Unc80,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,9,329178,ENSMUSG00000055567,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3891,cg22661058,-0.0000148,0.00000552,-2.684756544,0.007648698,loss,ns,0.00000253,0.00000937,0.269744782,0.787536075,pos,ns,-0.000131511,0.002745343,-0.047903327,0.961824134,neg,ns,0.01690433,-0.0000122,0.0000944,-0.129555674,0.897001995,neg,ns,0.564578268,5730522E02Rik,5730522E02Rik_Intron,11,25693483,25693532,25693531,25693532,50,+,TAATTTTTTTTGAATACCTGATTTATGCATTCCTCTGATGCCGAGTGTCG,"Intron (5730522E02Rik-202/5730522E02Rik, intron 2 of 5)",11,25617668,26210569,592902,2,5730522E02Rik-202,517037,5730522E02Rik-202;5730522E02Rik-201;5730522E02Rik-208,5730522E02Rik;5730522E02Rik;5730522E02Rik,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,90,70626,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15227,cg27543487,0.0000512,0.0000213,2.403784852,0.016813105,gain,ns,0.00000976,0.0000362,0.269472779,0.787745164,pos,ns,0.048799656,0.010606232,4.601035986,0.00000614,pos,ns,5.212091393,-0.001532284,0.000364747,-4.200944946,0.0000348,neg,ns,0.727457017,Cbx6,Cbx6_Exon,15,79828905,79828954,79828953,79828954,50,-,GAGGAGGCACTGGCGCTCGGCTTGACAGAGAAATGCACATCACTGATGCG,"Exon (Npcd-202/Npcd, exon 5 of 9)",15,79823896,79834688,10793,2,Cbx6-203,5734,Cbx6-203;Cbx6-208;Cbx6-202;Cbx6-201;Cbx6-206;Cbx6-207;Cbx6-204;Cbx6-205;Npcd-201;Npcd-202,Cbx6;Cbx6;Cbx6;Cbx6;Cbx6;Cbx6;Cbx6;Cbx6;Npcd;Npcd,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,4,494448,ENSMUSG00000089715,conserved gene and region,15,79828460,79829070,611,*,611,46,0.646481178,0.727644592,0.075286416,2.40E-29,CpGisland,TRUE,U11,Tr-P
12616,cg20776280,-0.00000483,0.00000742,-0.650895531,0.515596082,loss,ns,-0.0000034,0.0000126,-0.269448219,0.787764043,neg,ns,-0.008992825,0.003693285,-2.434912027,0.015459212,neg,ns,1.81081266,0.000278422,0.000127012,2.192098546,0.02911572,pos,ns,0.719712365,Astn2,Astn2_Intron,4,65888470,65888519,65888470,65888471,50,+,CGTGACATGCAGGGTAATGAATTGCCGTCTTTGCAGAAATGAATAAGTTG,"Intron (Astn2-202/Astn2, intron 9 of 21)",4,65380803,66404483,1023681,2,Astn2-202,515964,Astn2-202;Astn2-201,Astn2;Astn2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,7,56079,ENSMUSG00000028373,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5380,cg16820780,-0.00000171,0.00000286,-0.597141079,0.550849078,loss,ns,0.00000131,0.00000485,0.269412007,0.787791881,pos,ns,0.001832688,0.001421621,1.289153019,0.19830599,pos,ns,0.702664168,-0.00000725,0.0000489,-0.148234714,0.88225391,neg,ns,0.791707369,Hnrnpm,Hnrnpm_Intron,17,33669969,33670018,33670017,33670018,50,-,CTACTGTAACATGAGCACTCACTGCCTTCCTGATTTCATTCGATTCCACG,"Intron (Hnrnpm-206/Hnrnpm, intron 3 of 15)",17,33646233,33686860,40628,2,Hnrnpm-206,16842,Hnrnpm-206;Hnrnpm-202;Hnrnpm-205;Hnrnpm-201;Hnrnpm-207;Hnrnpm-212;Hnrnpm-215;Hnrnpm-208;Hnrnpm-209;Hnrnpm-203,Hnrnpm;Hnrnpm;Hnrnpm;Hnrnpm;Hnrnpm;Hnrnpm;Hnrnpm;Hnrnpm;Hnrnpm;Hnrnpm,0;0;0;0;0;0;0;0;0;15385,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,7,76936,ENSMUSG00000059208,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3914,cg15659936,0.0000736,0.00000821,8.963223895,3.03E-17,gain,yes,-0.00000376,0.000014,-0.269411723,0.7877921,neg,ns,0.009276866,0.004086986,2.269855059,0.023902802,pos,ns,1.621551183,-0.0000269,0.000140551,-0.191173446,0.848514853,neg,ns,0.056089693,Celf4,Celf4_Exon,18,25753460,25753509,25753508,25753509,50,+,CAGCTTGATGGCATCGTGGTCCTTCATGGGAATGGTCGACGGGTTCCCCG,Promoter (<=1kb),18,25477632,25753983,276352,2,Celf4-202,474,Celf4-202;Celf4-201;Celf4-203;Celf4-207;Celf4-206;Celf4-209;Celf4-205,Celf4;Celf4;Celf4;Celf4;Celf4;Celf4;Celf4,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,31,59,108013,ENSMUSG00000024268,conserved gene and region,18,25753376,25753608,233,*,233,18,0.592274678,0.882575758,0.077253219,5.03E-12,CpGisland,TRUE,U3,Pr-B
820,cg14555624,-0.0000553,0.0000101,-5.477437206,8.94E-08,loss,yes,-0.00000462,0.0000172,-0.269386427,0.787811545,neg,ns,-0.006851572,0.005028785,-1.362470583,0.174038441,neg,ns,0.759354814,0.00018284,0.000172939,1.057246589,0.291222234,pos,ns,0.933203722,1810013L24Rik,1810013L24Rik_Exon,16,8843168,8843217,8843168,8843169,50,-,CGAGCTACTTCAACGGAAACTAGCTCATCTGTAGAGACTGATTTGCAACC,"Exon (1810013L24Rik-201/1810013L24Rik, exon 3 of 4)",16,8830100,8858922,28823,1,1810013L24Rik-201,13068,1810013L24Rik-201;1810013L24Rik-202,1810013L24Rik;1810013L24Rik,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,18,19,69053,ENSMUSG00000022507,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14366,cg27568643,-0.0000476,0.00000983,-4.848710375,0.00000197,loss,ns,-0.0000045,0.0000167,-0.269317081,0.787864855,neg,ns,-0.011791868,0.004890858,-2.411001975,0.016490204,neg,ns,1.782773966,0.00000236,0.000168196,0.014038323,0.988808437,pos,ns,0.867559183,Ltbp1,Ltbp1_Intron,17,75378527,75378576,75378575,75378576,50,+,ACAATTTAATTGAACATTAAGCAATTTGATCTCTTTCACCTAATAAATCG,"Intron (Ltbp1-210/Ltbp1, intron 32 of 34)",17,75005568,75391328,385761,1,Ltbp1-210,372959,Ltbp1-210;Ltbp1-201;Ltbp1-203;Ltbp1-202,Ltbp1;Ltbp1;Ltbp1;Ltbp1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,9,268977,ENSMUSG00000001870,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25590,cg05656415,-0.00000754,0.00000582,-1.294384448,0.196496025,loss,ns,-0.00000266,0.00000989,-0.269270049,0.787901012,neg,ns,-0.001823831,0.002897812,-0.629381866,0.529562632,neg,ns,0.276082668,-0.000143537,0.0000997,-1.440328463,0.150783655,neg,ns,0.073767239,Ache,Ache_Exon,5,137294151,137294200,137294151,137294152,50,+,CGAGTTCCACCGCTGGAGCTCCTACATGGTGCACTGGAAGAACCAGTTCG,"Exon (Ache-201/Ache, exon 5 of 5)",5,137288277,137294466,6190,1,Ache-201,5874,Ache-204;Ache-206;Ache-207;Ache-201;Ache-209;Ache-202;Ache-208;Ache-203;Ache-205;Srrt-201;Srrt-212;Srrt-209;Srrt-211;Srrt-202;Srrt-216;Srrt-205;Srrt-206;Srrt-208;Srrt-217;Srrt-207;Srrt-213;Srrt-215;Srrt-204;Ufsp1-201;Ufsp1-202,Ache;Ache;Ache;Ache;Ache;Ache;Ache;Ache;Ache;Srrt;Srrt;Srrt;Srrt;Srrt;Srrt;Srrt;Srrt;Srrt;Srrt;Srrt;Srrt;Srrt;Srrt;Ufsp1;Ufsp1,6632;6385;6385;0;0;0;5866;5063;4904;0;0;0;0;5445;3225;2734;3017;2653;3367;4347;5809;6118;5686;-429;-842,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,11423,ENSMUSG00000023328,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23031,cg19961390,-0.0000189,0.00000493,-3.831906848,0.000153945,loss,ns,0.00000225,0.00000837,0.269243461,0.787921452,pos,ns,-0.007226977,0.002452242,-2.947090088,0.003451194,neg,ns,2.46203057,-0.0000791,0.0000843,-0.938246453,0.348848191,neg,ns,0.95597977,Zswim5,Zswim5_Exon,4,116986788,116986837,116986788,116986789,50,-,CGCTACATGGAGCTCCGTGGCTACCCGCTACGTGCCTTCAAGCTGGCCTC,"Exon (Zswim5-201/Zswim5, exon 14 of 14)",4,116877376,116989264,111889,1,Zswim5-201,109412,Urod-201;Urod-205;Urod-209;Urod-206;Urod-204;Zswim5-201,Urod;Urod;Urod;Urod;Urod;Zswim5,7576;4828;5049;7527;7520;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,74464,ENSMUSG00000033948,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11391,cg02690737,-0.0000412,0.0000056,-7.364761401,1.61E-12,loss,yes,0.00000256,0.00000951,0.269194272,0.787959268,pos,ns,-0.003872694,0.00278745,-1.389332217,0.165728852,neg,ns,0.780601878,-0.000181186,0.0000959,-1.890103185,0.059676845,neg,ns,0.834281135,Pcdh7,Pcdh7_Exon,5,57913359,57913408,57913407,57913408,50,-,GCATATGGAAAATGGTAGGGGCAAACACAACATCCACACACATAATCACG,"Exon (Pcdh7-203/Pcdh7, exon 2 of 3)",5,57717967,58133230,415264,1,Pcdh7-203,195392,Pcdh7-203;Pcdh7-202;Pcdh7-205;Pcdh7-206;Pcdh7-207;Pcdh7-204,Pcdh7;Pcdh7;Pcdh7;Pcdh7;Pcdh7;Pcdh7,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,13,54216,ENSMUSG00000029108,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4094,cg01456628,0.0000148,0.00000582,2.549345799,0.011273889,gain,ns,-0.00000266,0.00000988,-0.269171549,0.787976737,neg,ns,0.002259866,0.002895487,0.780478693,0.435704704,pos,ns,0.360807751,-0.0000759,0.0000996,-0.762508677,0.446336259,neg,ns,0.760375381,Gm45647,Gm45647_Intergenic_upstream,8,26763686,26763735,26763734,26763735,50,-,AAACATGTTCTCGGCTCCTGAATTATTAGTCCATTCACCATCTTTCCCCG,Distal Intergenic,8,26780315,26780509,195,1,Gm45647-201,-16629,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,46,62,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17698,cg06773738,0.0000144,0.00000245,5.866661331,1.14E-08,gain,yes,-0.00000112,0.00000416,-0.26910541,0.788027584,neg,ns,0.002117452,0.001217623,1.739004988,0.083026586,pos,ns,1.080782822,-0.0000287,0.0000419,-0.685225689,0.493713565,neg,ns,0.079533479,Zic4,Zic4_threeUTR,9,91387170,91387219,91387218,91387219,50,-,CACTACAGACACTCTATTAAGATACATTTGCGCTGACCTTTGCTTTCACG,3' UTR,9,91368970,91387793,18824,1,Zic4-204,18200,Zic4-204;Zic4-209;Zic4-205;Zic4-201;Zic4-202,Zic4;Zic4;Zic4;Zic4;Zic4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,threeUTR,18,55,22774,ENSMUSG00000036972,conserved gene and region,9,91387047,91387219,173,*,173,16,0.549132948,1.250225836,0.092485549,5.72E-12,CpGisland,TRUE,U13,Hc-P
22486,cg11856897,0.0000121,0.00000185,6.540651819,2.53E-10,gain,yes,0.000000847,0.00000315,0.269073295,0.788052274,pos,ns,0.002598572,0.000922495,2.816896521,0.005160111,pos,ns,2.287340975,-0.0000625,0.0000317,-1.968520603,0.049898874,neg,ns,0.013861764,Gm12830,Gm12830_Promoter,4,114821960,114822009,114821960,114821961,50,-,CGGTCTCAGCTACAACGGCGTGCATGCCAATTACGCCTGCAGGCTACCGC,Promoter (<=1kb),4,114821722,114856166,34445,1,Gm12830-201,238,Gm12830-201,Gm12830,0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,6,26,433746,ENSMUSG00000055198,mapped to different genes,4,114821908,114822167,260,*,260,26,0.676923077,0.936936937,0.1,4.14E-20,CpGisland,TRUE,U3,Pr-B
6797,cg05074568,-0.00000454,0.00000204,-2.223879168,0.026876834,loss,ns,-0.000000932,0.00000347,-0.268937585,0.788156612,neg,ns,0.001414651,0.001015631,1.3928784,0.164654644,pos,ns,0.783426016,-0.00003,0.0000349,-0.858549169,0.391252633,neg,ns,0.935914503,Luc7l2,Luc7l2_fiveUTR,6,38555061,38555110,38555061,38555062,50,+,CGCGTGAGTTGAAACATTGGTCACACTATATAAAGTTTGTATATGTGAAT,5' UTR,6,38551334,38605040,53707,1,Luc7l2-213,3727,Luc7l2-213;Luc7l2-208;Luc7l2-201;Luc7l2-209;Luc7l2-212;Luc7l2-211;Luc7l2-206;Luc7l2-207;Luc7l2-205;Luc7l2-202;Luc7l2-204;Luc7l2-210,Luc7l2;Luc7l2;Luc7l2;Luc7l2;Luc7l2;Luc7l2;Luc7l2;Luc7l2;Luc7l2;Luc7l2;Luc7l2;Luc7l2,0;0;0;0;3530;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,6,10,192196,ENSMUSG00000029823,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6048,cg14678572,-0.00000544,0.00000618,-0.880686511,0.379169775,loss,ns,-0.00000282,0.0000105,-0.268819568,0.788247349,neg,ns,-0.000250521,0.003076186,-0.081438972,0.935145411,neg,ns,0.029120853,0.0000744,0.00010579,0.703619205,0.482198087,pos,ns,0.54690363,Psd2,Psd2_Exon,18,35913329,35913378,35913329,35913330,50,+,CGTGTCTGTCTGCGACTAAAATAATACTGGGGTGAGACTCGCCGCAGGCA,"Exon (C330008A17Rik-201/C330008A17Rik-201, exon 1 of 2)",18,35964830,36014712,49883,1,Psd2-201,-51452,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,29,74002,ENSMUSG00000024347,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
68,cg09611799,-0.0000042,0.00000233,-1.799834993,0.07285889,loss,ns,0.00000107,0.00000396,0.268810695,0.788254171,pos,ns,0.000573813,0.001160784,0.494331815,0.62142197,pos,ns,0.206613396,-0.000046,0.0000399,-1.153412123,0.249629786,neg,ns,0.931588868,Dnmt3a,Dnmt3a_threeUTR,12,3902666,3902715,3902714,3902715,50,+,AGGGCACTGGCCGGCTCTTCTTTGAGTTCTACCGCCTCCTGCATGATGCG,3' UTR,12,3807030,3914443,107414,1,Dnmt3a-201,95636,Dnmt3a-201;Dnmt3a-218;Dnmt3a-215;Dnmt3a-205;Dnmt3a-203;Dnmt3a-214;Dnmt3a-216;Dnmt3a-210,Dnmt3a;Dnmt3a;Dnmt3a;Dnmt3a;Dnmt3a;Dnmt3a;Dnmt3a;Dnmt3a,0;0;0;0;0;5246;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,7,13435,ENSMUSG00000020661,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10470,cg03456203,-0.000028,0.00000742,-3.767472988,0.000197343,loss,ns,0.00000339,0.0000126,0.268749772,0.788301013,pos,ns,-0.003215011,0.003693489,-0.87045382,0.384725981,neg,ns,0.414848485,0.00000942,0.000127019,0.074169954,0.940922989,pos,ns,0.840880484,Npas3,Npas3_Intron,12,53723301,53723350,53723301,53723302,50,-,CGTGTTATGATTGGAGCAATAGCATTTAAGAGTCCAGAGGCAAGTCAGAA,"Intron (Npas3-204/Npas3, intron 3 of 10)",12,53248157,54069532,821376,1,Npas3-204,475144,Npas3-204;Npas3-201;Npas3-203,Npas3;Npas3;Npas3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,83,103,27386,ENSMUSG00000021010,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20113,cg10749945,-0.00000337,0.00000564,-0.597705017,0.550473143,loss,ns,0.00000257,0.00000958,0.268635809,0.788388638,pos,ns,0.00526561,0.002805567,1.876843688,0.061478636,pos,ns,1.211275777,-0.000146627,0.0000965,-1.519720292,0.129600524,neg,ns,0.088404669,Atp5g2,Atp5g2_fiveUTR,15,102672189,102672238,102672189,102672190,50,-,CGGCCCCGAGCTCCTCCATTTAATCGGATTTGGGAGAAGGGGAGGATAAA,Promoter (<=1kb),15,102665801,102672352,6552,2,Atp5g2-203,114,Atp5g2-202;Atp5g2-201;Atp5g2-204;Atp5g2-203,Atp5g2;Atp5g2;Atp5g2;Atp5g2,-1062;-4440;-4446;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,8,18,67942,ENSMUSG00000062683,mapped to different genes,15,102672078,102672489,412,*,412,37,0.621359223,0.940117176,0.089805825,1.33E-26,CpGisland,TRUE,U1,Pr-A
12332,cg07948275,-0.0000031,0.0000056,-0.553107471,0.580588467,loss,ns,-0.00000256,0.00000952,-0.268632205,0.78839141,neg,ns,0.00728181,0.002788882,2.611014248,0.009466302,pos,ns,2.023819632,-0.000276373,0.0000959,-2.88160143,0.004232706,neg,ns,0.877949757,Fign,Fign_Intergenic_downstream,2,63970412,63970461,63970412,63970413,50,+,CGACAAGTGAAAAGAAAACCGCAGTCAGCAGCTATTCAGCAGCAAATCAT,Downstream (1-2kb),2,63980447,64097988,117542,2,Fign-202,127527,Fign-203,Fign,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,28,84,60344,ENSMUSG00000075324,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16927,cg16459382,0.000081,0.0000159,5.107189394,0.000000572,gain,yes,-0.00000724,0.0000269,-0.268585094,0.788427633,neg,ns,-0.00761842,0.007894361,-0.965045818,0.335274084,neg,ns,0.474600016,-0.000463048,0.000271486,-1.705604636,0.089083388,neg,ns,0.356442057,Ascl1,Ascl1_Intergenic_downstream,10,87447503,87447552,87447551,87447552,50,+,ATTGCTTTTTAGGGTCCCTTTTCTGCTCTCTGTTCAAAATTCACGGGGCG,Distal Intergenic,10,87490819,87493660,2842,2,Ascl1-201,46108,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,11,11,17172,ENSMUSG00000020052,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23047,cg06917981,0.0000491,0.00000871,5.638902688,3.85E-08,gain,yes,-0.00000397,0.0000148,-0.268569794,0.788439398,neg,ns,0.010526436,0.004333208,2.42924778,0.015698159,pos,ns,1.804151282,-0.000270147,0.000149019,-1.812842278,0.070823294,neg,ns,0.116141293,Ptprn2,Ptprn2_Intron,12,117160710,117160759,117160758,117160759,50,-,TGAATAGGCCGGCCAGGCATTCATGGGGAAAAATCCATTTTGTTACCACG,"Intron (Ptprn2-204/Ptprn2, intron 12 of 22)",12,116485729,117276849,791121,1,Ptprn2-204,674981,Ptprn2-204;Ptprn2-201,Ptprn2;Ptprn2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,5,19276,ENSMUSG00000056553,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
7779,cg22717202,0.0000143,0.00000588,2.430121819,0.015661076,gain,ns,0.00000268,0.00000999,0.268522086,0.788476081,pos,ns,0.002732704,0.002926106,0.933904683,0.35107991,pos,ns,0.454594021,-0.000256143,0.000100629,-2.545427065,0.011398535,neg,ns,0.782084112,Arhgap15,Arhgap15_Intron,2,44299316,44299365,44299316,44299317,50,-,CGAAGCTGTTTTTCTGGAAGGGAATGGAGGCAGCTGTGTTTACAGCTCAA,"Intron (Arhgap15-203/Arhgap15, intron 12 of 14)",2,43748824,44395953,647130,1,Arhgap15-203,550492,Arhgap15-203;Arhgap15-202;Arhgap15-201,Arhgap15;Arhgap15;Arhgap15,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,72,78,76117,ENSMUSG00000049744,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25849,cg20426917,0.00000356,0.00000389,0.913363663,0.361761112,gain,ns,0.00000178,0.00000662,0.26851242,0.788483514,pos,ns,0.004804514,0.001937994,2.479117775,0.013702285,pos,ns,1.863207003,-0.000164202,0.0000666,-2.463737778,0.014292353,neg,ns,0.927415721,Pax7,Pax7_threeUTR,4,139737094,139737143,139737094,139737095,50,-,CGCCTGAGTTACAGAGGAAGCGCTTACAAGCAGCAGGTAGTTAAAGCAAA,3' UTR,4,139737062,139833528,96467,2,Pax7-201,96385,Pax7-201;Pax7-202,Pax7;Pax7,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,27,18509,ENSMUSG00000028736,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12336,cg07436962,-0.0000178,0.00000506,-3.516792779,0.000502058,loss,ns,0.0000023,0.00000859,0.268309647,0.788639436,pos,ns,-0.001365169,0.002516584,-0.542468997,0.587885215,neg,ns,0.230707462,-0.0000164,0.0000865,-0.188967478,0.850241961,neg,ns,0.933146262,Fign,Fign_threeUTR,2,63974255,63974304,63974303,63974304,50,+,AGATGCAGTATCCCTGGTTCACACAAATGCATCTGGCAGGTTCAAAATCG,3' UTR,2,63971507,64098012,126506,2,Fign-203,123708,Fign-203;Fign-201,Fign;Fign,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,14,84,60344,ENSMUSG00000075324,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3238,cg19483581,-0.00000843,0.00000668,-1.262013932,0.207892435,loss,ns,0.00000304,0.0000114,0.268211112,0.788715207,pos,ns,-0.000295949,0.003325904,-0.08898289,0.929152966,neg,ns,0.031912782,-0.000187506,0.000114378,-1.639362857,0.102152092,neg,ns,0.867873496,Kcnma1,Kcnma1_Intron,14,23326677,23326726,23326725,23326726,50,+,ACACATCTTTTAATAACATTGCCTTAACTTTAATGGCTCTCTGCCTTTCG,"Intron (Kcnma1-207/Kcnma1, intron 24 of 27)",14,23289431,23803304,513874,2,Kcnma1-207,476578,Kcnma1-207;Kcnma1-210;Kcnma1-205;Kcnma1-201;Kcnma1-208;Kcnma1-209;Kcnma1-212;Kcnma1-204;Kcnma1-202;Kcnma1-211;Kcnma1-229;Kcnma1-234;Kcnma1-223;Kcnma1-214;Kcnma1-216;Kcnma1-219;Kcnma1-220;Kcnma1-224;Kcnma1-233;Kcnma1-236;Kcnma1-237;Kcnma1-213;Kcnma1-228;Kcnma1-203;Kcnma1-206;Kcnma1-221;Kcnma1-225;Kcnma1-226;Kcnma1-230;Kcnma1-235,Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,41,16531,ENSMUSG00000063142,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25117,cg09616617,-0.0000422,0.00000665,-6.345084734,7.87E-10,loss,yes,0.00000303,0.0000113,0.268144437,0.78876648,pos,ns,0.004376922,0.003307661,1.323267848,0.186721458,pos,ns,0.728805769,-0.0000598,0.00011375,-0.526039431,0.599236925,neg,ns,0.895118046,Ahdc1,Ahdc1_Intron,4,133021536,133021585,133021536,133021537,50,+,CGACAGTGAAGGTTACTTTACTAGATGCATGATTTTAAACGGAATCTCCA,"Intron (Ahdc1-210/Ahdc1, intron 2 of 3)",4,133011260,133060820,49561,1,Ahdc1-210,10276,Ahdc1-210;Ahdc1-203;Ahdc1-204;Ahdc1-205;Ahdc1-207;Ahdc1-211;Ahdc1-209;Ahdc1-206;Ahdc1-201,Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,35,49,230793,ENSMUSG00000037692,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4020,cg12289788,-0.0000112,0.00000493,-2.277305853,0.02344887,loss,ns,-0.00000225,0.00000838,-0.267970611,0.788900156,neg,ns,-0.004067222,0.00245488,-1.656790836,0.098573479,neg,ns,1.006239915,-0.0000414,0.0000844,-0.49018435,0.624350196,neg,ns,0.890657465,Gm50479,Gm50479_Intergenic_downstream,8,26488766,26488815,26488766,26488767,50,+,CGCCTGAGTGAATCAAAATGAATGTAAATGAGGTTTATTAAGTCAACCCC,Distal Intergenic,8,26237222,26237407,186,1,Gm50479-201,251544,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,21,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4299,cg14880506,-0.0000154,0.00000597,-2.583413824,0.010240489,loss,ns,0.00000272,0.0000101,0.267847457,0.788994868,pos,ns,-0.004873218,0.002970036,-1.64079443,0.101854274,neg,ns,0.992020743,0.000259837,0.000102139,2.543943076,0.011446057,pos,ns,0.891978451,Erc2,Erc2_Intron,14,28252562,28252611,28252562,28252563,50,-,CGATGTACGTTTAATTTAAAAAATTGCTGTTTCCTACAAGAGGGAGCTAT,"Intron (Erc2-205/Erc2, intron 16 of 19)",14,27622428,28478535,856108,1,Erc2-205,630134,Erc2-205;Erc2-201;Erc2-210;Erc2-208;Erc2-204,Erc2;Erc2;Erc2;Erc2;Erc2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,14,17,238988,ENSMUSG00000040640,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20286,cg02227188,0.0000948,0.0000106,8.911772831,4.39E-17,gain,yes,-0.00000484,0.0000181,-0.267780244,0.789046559,neg,ns,0.011021513,0.005296815,2.080781263,0.0382747,pos,ns,1.417088201,-0.000370849,0.000182157,-2.035872688,0.042613083,neg,ns,0.099626843,Hoxc5,Hoxc5_Exon,15,102983987,102984036,102984035,102984036,50,+,TTTCTCTTCAATATGTATTTAACCAGGGACCGTCGGTATGAGGTGGCCCG,"Exon (Hoxc9-201/Hoxc9, exon 3 of 3)",15,102967443,103015676,48234,1,Hoxc5-202,16544,Hoxc5-202;Hoxc9-202;Hoxc9-201,Hoxc5;Hoxc9;Hoxc9,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,72,134,15424,ENSMUSG00000022485,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
27887,cg19090360,0.0000225,0.00000964,2.333108704,0.020281818,gain,ns,-0.00000438,0.0000164,-0.267639287,0.789154968,neg,ns,0.014784619,0.004798993,3.080775204,0.002249712,pos,ns,2.647873016,-0.000466923,0.000165037,-2.82920114,0.004970677,neg,ns,0.255487808,Prox1,Prox1_Intron,1,190131120,190131169,190131120,190131121,50,+,CGTGTTGCAACCAGGGTTTGAAAAGTATGTGGCCTTCAAACAGTCTGCTT,"Intron (Prox1-202/Prox1, intron 4 of 4)",1,190118035,190170714,52680,2,Prox1-202,39545,Prox1-202;Prox1-201;Prox1-203,Prox1;Prox1;Prox1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,59,19130,ENSMUSG00000010175,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
16102,cg16947316,-0.00000716,0.00000513,-1.395169624,0.163963395,loss,ns,0.00000233,0.00000872,0.267466893,0.789287561,pos,ns,0.011209969,0.002553473,4.390087688,0.0000156,pos,ns,4.807958999,-0.000404414,0.0000878,-4.605358918,0.00000602,neg,ns,0.857065966,Nuak1,Nuak1_Exon,10,84409669,84409718,84409717,84409718,50,+,TCTCGTCTGATGTGAACCATGTCTTGTTCATCCTTAATTTTGTCCTTACG,"Exon (Nuak1-201/Nuak1, exon 2 of 7)",10,84370905,84440597,69693,2,Nuak1-201,30879,Nuak1-201,Nuak1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,77976,ENSMUSG00000020032,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13394,cg10040836,0.0000608,0.0000132,4.589127224,0.00000647,gain,ns,0.00000602,0.0000225,0.267447259,0.789302662,pos,ns,0.014028554,0.006591852,2.12816595,0.034111898,pos,ns,1.467094109,-0.000161444,0.000226693,-0.712167462,0.476896712,neg,ns,0.027518006,Nr2f2,Nr2f2_Exon,7,70359926,70359975,70359974,70359975,50,-,CGGCAGTACTGGCACTGGTTGCGATGGTGCTGGTCGATGGGACAGTTCCG,Promoter (<=1kb),7,70351944,70360593,8650,2,Nr2f2-201,618,Nr2f2-201;Nr2f2-203;Nr2f2-202;Nr2f2-205;Nr2f2-204;Nr2f2-206,Nr2f2;Nr2f2;Nr2f2;Nr2f2;Nr2f2;Nr2f2,0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,24,69,11819,ENSMUSG00000030551,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
2582,cg02798601,-0.0000114,0.00000814,-1.404645059,0.161128027,loss,ns,0.0000037,0.0000138,0.267385967,0.789349805,pos,ns,0.005553042,0.00405333,1.369995035,0.171679853,pos,ns,0.765280666,-0.000174831,0.000139394,-1.254225727,0.210704864,neg,ns,0.871555596,Rbm10,Rbm10_Exon,X,20641229,20641278,20641229,20641230,50,+,CGCTACACGATGGATGGAAGCCAATCAGGTTGCTTTGCCGCACTTGAACC,"Exon (Rbm10-205/Rbm10, exon 6 of 24)",20,20617503,20650888,33386,1,Rbm10-205,23726,Rbm10-205;Rbm10-204;Rbm10-203;Rbm10-206;Rbm10-201;Rbm10-202;Rbm10-207,Rbm10;Rbm10;Rbm10;Rbm10;Rbm10;Rbm10;Rbm10,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,14,236732,ENSMUSG00000031060,conserved gene and region,X,20641104,20641268,165,*,165,11,0.56969697,0.821638751,0.066666667,0.000000724,CpGisland,TRUE,U10,Tr-S
4444,cg13393709,0.0000691,0.00000834,8.285781068,3.58E-15,gain,yes,-0.00000379,0.0000142,-0.267182373,0.789506406,neg,ns,0.012078934,0.004150721,2.910080664,0.003874901,pos,ns,2.411739369,-0.00031346,0.000142743,-2.195971999,0.028834481,neg,ns,0.070079463,Mb21d2,Mb21d2_Promoter,16,28929988,28930037,28930036,28930037,50,+,GAAGTGGAAACAATGTGAAATTCACCAGCTCTGAAATCAACAAGCTGCCG,Promoter (<=1kb),16,28826176,28929673,103498,2,Mb21d2-201,-315,Mb21d2-201,Mb21d2,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,4,239796,ENSMUSG00000051065,conserved gene and region,16,28930016,28930242,227,*,227,18,0.59030837,0.912053571,0.079295154,3.19E-12,CpGisland,TRUE,U1,Pr-A
3445,cg14715530,0.0000553,0.0000105,5.24688994,0.000000287,gain,yes,-0.00000479,0.0000179,-0.267148571,0.789532406,neg,ns,0.021753882,0.005248462,4.144810735,0.0000439,pos,ns,4.357225251,-0.000522806,0.000180494,-2.896528078,0.00404158,neg,ns,0.243207814,Bcl11a,Bcl11a_Exon,11,24086197,24086246,24086197,24086198,50,+,CGACTGGCCAGGCCAGAGTAGAGAGGGCAGTTGCTGAAGCGCACAGACAT,"Exon (Bcl11a-205/Bcl11a, exon 2 of 2)",11,24078056,24173194,95139,1,Bcl11a-201,8141,Bcl11a-201;Bcl11a-203;Bcl11a-205;Bcl11a-202;Bcl11a-204,Bcl11a;Bcl11a;Bcl11a;Bcl11a;Bcl11a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,51,98,14025,ENSMUSG00000000861,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16451,cg21404816,-0.00000687,0.00000261,-2.629579806,0.008975481,loss,ns,0.00000118,0.00000444,0.26712929,0.789547237,pos,ns,-0.000445087,0.001299385,-0.342536673,0.732179183,neg,ns,0.135382623,-0.0000122,0.0000447,-0.272845094,0.785153957,neg,ns,0.918302839,Ylpm1,Ylpm1_Exon,12,85028783,85028832,85028783,85028784,50,-,CGAAGATTTGAGGATTTAGGGTCAAGGTGTGAAGGACCGAGACCCAAAGG,"Exon (Ylpm1-201/Ylpm1, exon 5 of 21)",12,84996321,85070492,74172,1,Ylpm1-207,32462,Ylpm1-207;Ylpm1-201;Ylpm1-202;Ylpm1-203,Ylpm1;Ylpm1;Ylpm1;Ylpm1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,13,56531,ENSMUSG00000021244,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4952,cg09606167,-0.00000791,0.00000202,-3.92272031,0.000107859,loss,ns,-0.000000915,0.00000342,-0.267097264,0.789571872,neg,ns,-0.001282026,0.001003077,-1.278093476,0.20217263,neg,ns,0.694277639,0.0000311,0.0000345,0.901091077,0.368239411,pos,ns,0.951733328,Colq,Colq_Exon,14,31525981,31526030,31526029,31526030,50,-,CCTACCCAGGGAGATAGGTCTCGCATGTCAGGTAGCCAAAGTCAGAGCCG,"Exon (Colq-201/Colq, exon 16 of 17)",14,31523082,31577383,54302,2,Colq-201,51353,Colq-201;Colq-205,Colq;Colq,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,382864,ENSMUSG00000057606,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2359,cg05039637,0.00000283,0.0000021,1.347586384,0.178775491,gain,ns,-0.000000954,0.00000357,-0.266991878,0.789652938,neg,ns,0.001287152,0.001046785,1.229623549,0.21977052,pos,ns,0.658030564,-0.0000215,0.000036,-0.598560309,0.549903226,neg,ns,0.04258762,Tfap2d,Tfap2d_Intron,1,19107520,19107569,19107520,19107521,50,-,CGGGCTGTTGGGTAGGTTAACACCCTTCAAGGCCTCTTTCATGTCCAATA,"Intron (Tfap2d-201/Tfap2d, intron 2 of 7)",1,19103022,19166346,63325,1,Tfap2d-201,4498,Tfap2d-201;Tfap2d-202,Tfap2d;Tfap2d,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,23,226896,ENSMUSG00000042596,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27194,cg11988243,-0.00000631,0.00000315,-2.00169502,0.046188658,loss,ns,0.00000143,0.00000535,0.266880126,0.789738904,pos,ns,-0.004409131,0.001568337,-2.811341171,0.005247766,neg,ns,2.280025522,0.000059,0.0000539,1.094072401,0.274772603,pos,ns,0.928565018,Mafb,Mafb_Intergenic_upstream,2,160382350,160382399,160382350,160382351,50,+,CGAGTAGTAAAGAAGATAATACCCCAGCAGAATCAGTGACCCACTACAAA,Distal Intergenic,2,160363703,160367065,3363,2,Mafb-201,-15285,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,22,16658,ENSMUSG00000074622,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2065,cg13030822,-0.0000018,0.00000121,-1.485655919,0.138386376,loss,ns,0.000000549,0.00000206,0.26684941,0.789762533,pos,ns,0.001294792,0.000602427,2.149292762,0.032385022,pos,ns,1.489655803,-0.0000488,0.0000207,-2.354758456,0.019157986,neg,ns,0.033429168,Cdk13,Cdk13_Exon,13,17804515,17804564,17804563,17804564,50,-,GGCTGCAGGAGCGGCAACAGCAGCGGCGGCTGCTGAGGGGACAGGAATCG,Promoter (<=1kb),13,17710315,17805097,94783,2,Cdk13-207,533,Cdk13-207;Cdk13-201;Cdk13-205;Cdk13-206;Cdk13-203,Cdk13;Cdk13;Cdk13;Cdk13;Cdk13,0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,6,69562,ENSMUSG00000041297,conserved gene but different region,13,17803462,17805807,2346,*,2346,317,0.735720375,0.998541828,0.135123615,1.14E-285,CpGisland,TRUE,U1,Pr-A
4222,cg01167936,0.0000235,0.00000651,3.609467044,0.000357645,gain,ns,0.00000295,0.0000111,0.266821072,0.789784333,pos,ns,0.001990175,0.00323915,0.614412597,0.539393379,pos,ns,0.268094389,0.0000464,0.000111394,0.416334834,0.677453105,pos,ns,0.8382079,Pacsin1,Pacsin1_Exon,17,27704909,27704958,27704909,27704910,50,-,CGAGCTGCACCAGGAGGTGAAGAACAATCTGCTGAATGAGGACCTGGAGA,"Exon (Pacsin1-204/Pacsin1, exon 4 of 10)",17,27655509,27708659,53151,1,Pacsin1-204,49400,Pacsin1-204;Pacsin1-201;Pacsin1-211;Pacsin1-208;Pacsin1-202;Pacsin1-206;Pacsin1-207;Pacsin1-203;Pacsin1-210;Pacsin1-209,Pacsin1;Pacsin1;Pacsin1;Pacsin1;Pacsin1;Pacsin1;Pacsin1;Pacsin1;Pacsin1;Pacsin1,0;0;0;0;0;0;0;-691;-1522;-1576,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,23969,ENSMUSG00000040276,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13607,cg02007453,0.00000635,0.00000156,4.075048578,0.0000585,gain,ns,-0.000000707,0.00000265,-0.266786188,0.789811168,neg,ns,0.002326351,0.000776136,2.997351536,0.002943514,pos,ns,2.531133847,-0.0000634,0.0000267,-2.376150628,0.018101625,neg,ns,0.068241749,Dlx1,Dlx1_fiveUTR,2,71529984,71530033,71530032,71530033,50,+,GCGAGAAGAGATGACCATGACCACCATGCCAGAAAGTCTCAACAGCCCCG,5' UTR,2,71528113,71533980,5868,1,Dlx1-201,1871,Dlx1-201;Dlx1-202;Dlx1-205;Dlx1-204;Dlx1-203;Dlx1-206;Metap1d-201;Metap1d-205,Dlx1;Dlx1;Dlx1;Dlx1;Dlx1;Dlx1;Metap1d;Metap1d,0;0;0;0;0;-747;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,12,36,13390,ENSMUSG00000041911,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
331,cg07221240,0.0000242,0.00000572,4.221542462,0.0000319,gain,ns,0.00000259,0.00000972,0.266573685,0.789974647,pos,ns,0.008310313,0.002847939,2.91800993,0.003780316,pos,ns,2.422471953,-0.00000299,0.0000979,-0.030571691,0.975630792,neg,ns,0.069915663,Syne1,Syne1_Exon,10,5194628,5194677,5194628,5194629,50,-,CGATCTGCTCCTGGTAGCCCTTAATTTTCTGCGCCAGCTCCTGAGGAAAC,"Exon (Syne1-205/Syne1, exon 91 of 146)",10,5020917,5550678,529762,2,Syne1-205,356001,Syne1-205;Syne1-206,Syne1;Syne1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,64009,ENSMUSG00000096054,conserved gene and region,10,5194500,5194689,190,*,190,11,0.552631579,0.766691123,0.057894737,0.00000285,CpGisland,TRUE,U1,Pr-A
10337,cg17035315,-0.00000437,0.0000036,-1.213877488,0.225718489,loss,ns,0.00000163,0.00000612,0.266393595,0.790113199,pos,ns,-0.000107778,0.001792428,-0.060129587,0.952091171,neg,ns,0.021321462,0.0000147,0.0000616,0.238254218,0.811841336,pos,ns,0.958726061,Abca1,Abca1_Exon,4,53071977,53072026,53071977,53071978,50,-,CGGGCTTCAGACACATGCTTCCTGATGAGGTTGGAGATAGCAGAGACATC,"Exon (Abca1-201/Abca1, exon 25 of 50)",4,53030787,53159895,129109,2,Abca1-201,87869,Abca1-201,Abca1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,7,11303,ENSMUSG00000015243,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26578,cg02273388,0.00000257,0.00000255,1.008403752,0.314047116,gain,ns,-0.00000116,0.00000434,-0.266377842,0.790125319,neg,ns,0.001314844,0.001270907,1.034570674,0.301675837,pos,ns,0.520459474,-0.0000697,0.0000437,-1.594481751,0.111847164,neg,ns,0.937739605,Casz1,Casz1_Intron,4,148924641,148924690,148924641,148924642,50,+,CGCAGGGAGAACTTTATTTCCTACCAGGGAGTTCAGAGCCACCAAGCAGA,"Intron (Casz1-201/Casz1, intron 4 of 15)",4,148804429,148945129,140701,1,Casz1-201,120212,Casz1-201;Casz1-202;Casz1-206,Casz1;Casz1;Casz1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,94,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25445,cg04929581,0.0000813,0.0000191,4.263252395,0.0000268,gain,ns,0.00000862,0.0000324,0.266171782,0.790283859,pos,ns,0.021709119,0.009491308,2.287263193,0.022853978,pos,ns,1.64103819,-0.001382995,0.000326405,-4.23704828,0.0000299,neg,ns,0.612823526,Zfp281,Zfp281_Exon,1,136627170,136627219,136627170,136627171,50,-,CGAGTGGATTTACACACCTCAGGAGAACACTCAGAATTGGTTCAAGAAGA,"Exon (Zfp281-201/Zfp281, exon 2 of 2)",1,136624901,136630053,5153,1,Zfp281-201,2269,Zfp281-201;Zfp281-202,Zfp281;Zfp281,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,7,226442,ENSMUSG00000041483,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
27916,cg08695595,0.0000288,0.00000415,6.92805874,2.47E-11,gain,yes,-0.00000188,0.00000705,-0.266143113,0.790305917,neg,ns,0.002747532,0.002066492,1.329563443,0.184639682,pos,ns,0.733674957,-0.0000882,0.0000711,-1.241043056,0.215528156,neg,ns,0.041529629,Prox1,Prox1_fiveUTR,1,190170669,190170718,190170669,190170670,50,+,CGCTCCCTCAGCTGAGGGCTCCGCTCCACAACAAGATTTACTTTAAGACA,Promoter (<=1kb),1,190118035,190170714,52680,2,Prox1-202,0,Prox1-202;Prox1-201;Prox1-203,Prox1;Prox1;Prox1,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,59,19130,ENSMUSG00000010175,mapped to different genes,1,190170362,190170691,330,*,330,34,0.696969697,0.952380952,0.103030303,1.26E-26,CpGisland,TRUE,U1,Pr-A
26164,cg01526253,-0.0000102,0.00000753,-1.352276103,0.177272652,loss,ns,-0.0000034,0.0000128,-0.266067834,0.790363838,neg,ns,-0.009704866,0.003748737,-2.588836153,0.010084067,neg,ns,1.996364283,0.000196743,0.000128919,1.526103723,0.128003616,pos,ns,0.085303138,Lmo4,Lmo4_Intron,3,144203693,144203742,144203693,144203694,50,-,CGAGGAATTGCTTTTTGTTACAATTTCAGCCCTAACCCAAATGAATCTGC,"Intron (Lmo4-201/Lmo4, intron 1 of 4)",3,144188530,144205220,16691,2,Lmo4-201,1478,Lmo4-203;Lmo4-201;Lmo4-202;Lmo4-207;Lmo4-208;Lmo4-205;Lmo4-204,Lmo4;Lmo4;Lmo4;Lmo4;Lmo4;Lmo4;Lmo4,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,54,16911,ENSMUSG00000028266,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
17629,cg20616387,0.00000693,0.0000157,0.440454095,0.659915219,gain,ns,0.00000711,0.0000267,0.266029755,0.790393138,pos,ns,0.018671042,0.007826294,2.385681146,0.017647743,pos,ns,1.753310819,-0.000613826,0.000269146,-2.280646283,0.023247811,neg,ns,0.770719852,Olig1,Olig1_Intron,16,91301723,91301772,91301723,91301724,50,-,CGTTTCCAACATAAAAAGGGGGATTCTGTTATTGTTTGGGTGTAGACGGG,"Intron (Gm15966-209/Gm15966-209, intron 1 of 2)",16,91269772,91271933,2162,1,Olig1-201,32000,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,9,50914,ENSMUSG00000046160,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7240,cg03719598,0.00005,0.0000101,4.953816133,0.0000012,gain,yes,-0.00000456,0.0000172,-0.266028201,0.790394333,neg,ns,0.001335986,0.005024812,0.265877771,0.790510083,pos,ns,0.102092586,0.0000255,0.000172803,0.147361455,0.882942522,pos,ns,0.451297483,Arid3c,Arid3c_Intron,4,41727060,41727109,41727060,41727061,50,-,CGCCTTTGGACCCGAACAATTAGCTGCGGCCTGATTAATGGGGGAAAATT,"Intron (Il11ra1-203/Il11ra1, intron 2 of 13)",4,41723836,41731142,7307,2,Arid3c-203,4033,Arid3c-203;Arid3c-201;Arid3c-202;Dctn3-203;Dctn3-201;Dctn3-202;Il11ra1-203,Arid3c;Arid3c;Arid3c;Dctn3;Dctn3;Dctn3;Il11ra1,0;0;0;-3897;-3890;-3923;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,2,550619,ENSMUSG00000066224,conserved gene and region,4,41726974,41727143,170,*,170,11,0.611764706,0.70433145,0.064705882,0.000000972,CpGisland,TRUE,U13,Hc-P
4049,cg23488193,-0.00000409,0.00000104,-3.921937206,0.000108193,loss,ns,0.000000471,0.00000177,0.266000602,0.790415569,pos,ns,0.000601687,0.000518753,1.159871463,0.246993672,pos,ns,0.607314173,-0.0000339,0.0000178,-1.902855602,0.057985696,neg,ns,0.96577502,Gm45647,Gm45647_Intergenic_upstream,8,26661138,26661187,26661186,26661187,50,-,TCCCCTCGAAATTCATTGTTACTGCAGTTAATGGCCAGTTTATTAGAGCG,Distal Intergenic,8,26780315,26780509,195,1,Gm45647-201,-119177,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,46,62,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18651,cg02351188,0.000161756,0.000018,9.003657991,2.26E-17,gain,yes,0.00000812,0.0000305,0.265995662,0.790419371,pos,ns,0.03246926,0.008941646,3.631239716,0.000329912,pos,ns,3.481601327,-0.000665281,0.000307502,-2.163497456,0.031266726,neg,ns,0.348059763,Skap1,Skap1_Intron,11,96579237,96579286,96579237,96579238,50,+,CGGATAGTACCAGCGGCAGGTCAAGTTTACCATCCGTCTTTCAGTGGGAC,"Intron (Skap1-204/Skap1, intron 4 of 12)",11,96464593,96758941,294349,1,Skap1-204,114644,Skap1-204;Skap1-203;Skap1-209;Skap1-201;Skap1-205;Skap1-206;Skap1-208,Skap1;Skap1;Skap1;Skap1;Skap1;Skap1;Skap1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,40,46,78473,ENSMUSG00000057058,conserved gene and region,11,96578991,96579282,292,*,292,18,0.547945206,0.829545455,0.061643836,2.30E-10,CpGisland,TRUE,U9,En-Pp
2848,cg24980994,-0.00000244,0.00000132,-1.844890741,0.066007185,loss,ns,0.000000597,0.00000224,0.265969114,0.790439798,pos,ns,0.000769331,0.000657423,1.170222658,0.242810226,pos,ns,0.614733028,-0.0000466,0.0000226,-2.062083589,0.040032866,neg,ns,0.023141959,Zfp503,Zfp503_fiveUTR,14,21987494,21987543,21987542,21987543,50,-,TACTGCTTCTTAGGGCAGAAAGCGAGGGCGCTGTGCTCATGACCCACCCG,5' UTR,14,21983959,21989601,5643,2,Zfp503-201,2058,Zfp503-201,Zfp503,0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,27,218820,ENSMUSG00000039081,conserved gene and region,14,21987271,21988006,736,*,736,86,0.713315217,0.928039411,0.116847826,1.05E-71,CpGisland,TRUE,U3,Pr-B
11334,cg25734253,-0.00000118,0.00000119,-0.991193353,0.322364202,loss,ns,0.000000539,0.00000203,0.265870501,0.790515677,pos,ns,-0.000186655,0.000593686,-0.314399686,0.753428982,neg,ns,0.122957678,0.00000119,0.0000204,0.058083692,0.953719387,pos,ns,0.041201071,Zhx2,Zhx2_fiveUTR,15,57694654,57694703,57694654,57694655,50,-,CGTTACAGATCATGTGGGTTTTGGCGTAGATTCCCCACTGATCGAGGCAT,Promoter (<=1kb),15,57694665,57839832,145168,1,Zhx2-201,0,Zhx2-201;Zhx2-202,Zhx2;Zhx2,0;-1026,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,6,387609,ENSMUSG00000071757,conserved gene but different region,15,57694551,57694697,147,*,147,11,0.551020408,1.004347826,0.074829932,0.000000227,CpGisland,TRUE,U2,Pr-W
555,cg13309444,0.00000437,0.0000119,0.366856725,0.713976176,gain,ns,0.00000538,0.0000203,0.265842399,0.7905373,pos,ns,-0.0070499,0.005933287,-1.188194682,0.235666216,neg,ns,0.627702672,0.000350394,0.000204045,1.717237317,0.086934557,pos,ns,0.122292002,Dlx6,Dlx6_Exon,6,6869592,6869641,6869640,6869641,50,-,AATGCAGCCATAATTAGAGTAATTTTTCATGTAGCCCGCTGATTACAGCG,"Exon (Dlx6os1-201/Dlx6os1-201, exon 2 of 3)",6,6863798,6865430,1633,1,Dlx6-204,5843,Dlx6-203;Dlx6-202;Dlx6-201;Dlx6-204,Dlx6;Dlx6;Dlx6;Dlx6,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,36,13396,ENSMUSG00000029754,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
7266,cg20068186,-0.00000686,0.00000371,-1.850137368,0.065245187,loss,ns,-0.00000168,0.0000063,-0.265822594,0.790552541,neg,ns,-0.002727538,0.001846189,-1.477388278,0.140586778,neg,ns,0.852055523,0.0000686,0.0000635,1.080217678,0.280884937,pos,ns,0.899575164,Oxr1,Oxr1_Exon,15,41848694,41848743,41848742,41848743,50,-,CGCAGGATCGATGCTCTAAATACTGAAGAACTGCGCACACTCTGCAGACG,"Exon (Oxr1-204/Oxr1, exon 12 of 17)",15,41447482,41861045,413564,1,Oxr1-203,401212,Oxr1-203;Oxr1-204;Oxr1-207;Oxr1-214;Oxr1-206;Oxr1-201;Oxr1-202;Oxr1-205;Oxr1-212;Oxr1-213;Oxr1-216;Oxr1-211,Oxr1;Oxr1;Oxr1;Oxr1;Oxr1;Oxr1;Oxr1;Oxr1;Oxr1;Oxr1;Oxr1;Oxr1,0;0;0;0;0;0;0;0;0;0;0;-1481,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,170719,ENSMUSG00000022307,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3557,cg07462160,-0.00000917,0.00000247,-3.707011148,0.000248363,loss,ns,-0.00000112,0.0000042,-0.265742641,0.790614063,neg,ns,0.000089,0.001230745,0.07233594,0.942381211,pos,ns,0.025773381,0.0000121,0.0000423,0.286054987,0.775027067,pos,ns,0.951320352,Agap3,Agap3_Intron,5,24497763,24497812,24497763,24497764,50,+,CGCGCTCTAATTGACAGTAATTAGGCAGCTCCCTGATTGTTTCTAATTCT,"Intron (Agap3-201/Agap3, intron 12 of 17)",5,24452177,24502047,49871,1,Agap3-201,45586,Agap3-201;Agap3-202;Gbx1-201,Agap3;Agap3;Gbx1,0;0;29390,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,13,213990,ENSMUSG00000023353,conserved gene and region,5,24497726,24497764,39,*,39,6,0.743589744,1.392857143,0.153846154,0.00000642,CpGisland,TRUE,NA,NRS
12346,cg10373443,-0.00000677,0.0000018,-3.771805389,0.000194096,loss,ns,0.00000081,0.00000305,0.265676535,0.790664932,pos,ns,0.000633438,0.000893536,0.708911483,0.478912184,pos,ns,0.319744114,-0.0000239,0.0000307,-0.778361585,0.436949565,neg,ns,0.96257157,Fign,Fign_Intron,2,63981575,63981624,63981575,63981576,50,-,CGACAGTTTCAAATCTGCTTCGTGGAGTGCAGCAAAGCAATCTCCCAGGC,"Intron (Fign-203/Fign, intron 2 of 2)",2,63971507,64098012,126506,2,Fign-203,116388,Fign-203;Fign-201;Fign-202;Fign-204,Fign;Fign;Fign;Fign,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,84,60344,ENSMUSG00000075324,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22621,cg21965982,-0.000000175,0.000000756,-0.230999939,0.817467233,loss,ns,-0.000000341,0.00000128,-0.265549409,0.790762759,neg,ns,-0.000191763,0.000376186,-0.509756413,0.610584832,neg,ns,0.214253988,0.0000044,0.0000129,0.340225029,0.733917493,pos,ns,0.989022412,Msi1,Msi1_Exon,5,115447109,115447158,115447157,115447158,50,+,CTGTTTTACGTTTCATTTTAGAATTCCGTGTAGAGCGGACCCCTCTCCCG,"Exon (Msi1-208/Msi1, exon 11 of 15)",5,115429599,115455698,26100,1,Msi1-208,17510,Msi1-208;Msi1-209;Msi1-201;Msi1-203;Msi1-205;Msi1-207;Msi1-204;Msi1-202,Msi1;Msi1;Msi1;Msi1;Msi1;Msi1;Msi1;Msi1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,14,17690,ENSMUSG00000054256,conserved gene and region,5,115447002,115447281,280,*,280,18,0.646428571,0.622222222,0.064285714,1.15E-10,CpGisland,TRUE,NA,NRS
18164,cg22434010,0.0000195,0.00000441,4.428539737,0.0000132,gain,ns,-0.00000199,0.00000749,-0.265437071,0.790849208,neg,ns,0.003515955,0.002195629,1.601342718,0.110319531,pos,ns,0.957347593,-0.000101421,0.0000755,-1.343186131,0.180194209,neg,ns,0.037926312,Magi1,Magi1_fiveUTR,6,94283820,94283869,94283820,94283821,50,+,CGCGGCCCCTTTAAGCAGATACAAAGGCTCGGCTTGTTTTGTTACAGTTC,Promoter (<=1kb),6,93675455,94283917,608463,2,Magi1-208,48,Magi1-201;Magi1-202;Magi1-208;Magi1-205;Magi1-204,Magi1;Magi1;Magi1;Magi1;Magi1,0;0;0;0;-795,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,8,18,14924,ENSMUSG00000045095,conserved gene but different region,6,94283398,94284030,633,*,633,85,0.710900474,1.066945607,0.134281201,8.37E-77,CpGisland,TRUE,U1,Pr-A
16274,cg18299835,0.00000989,0.00000932,1.060960663,0.289533654,gain,ns,0.0000042,0.0000158,0.265427243,0.790856772,pos,ns,0.005825374,0.004638306,1.255927077,0.210088134,pos,ns,0.677598477,-0.000297288,0.000159511,-1.863746886,0.063302522,neg,ns,0.512495297,Nfix,Nfix_threeUTR,8,84706830,84706879,84706878,84706879,50,+,CTCTGACCCTGTTTAGCCAACCGAACTGAAAAATCATTGCACTTTGACCG,3' UTR,8,84699876,84708218,8343,2,Nfix-207,1339,Lyl1-203;Lyl1-204;Lyl1-201;Lyl1-202;Nfix-207;Nfix-208;Nfix-204;Nfix-201;Nfix-202;Nfix-203;Nfix-206,Lyl1;Lyl1;Lyl1;Lyl1;Nfix;Nfix;Nfix;Nfix;Nfix;Nfix;Nfix,5381;0;5286;5049;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,5,49,18032,ENSMUSG00000001911,conserved gene and region,8,84706661,84707081,421,*,421,39,0.700712589,0.790743595,0.09263658,1.47E-28,CpGisland,TRUE,U6,En-Sp
3883,cg17807911,0.00000885,0.00000293,3.019885018,0.002738955,gain,ns,-0.00000132,0.00000498,-0.265354217,0.79091297,neg,ns,0.002337601,0.001458145,1.603133258,0.109923594,pos,ns,0.958909079,-0.0000307,0.0000501,-0.613187205,0.540202178,neg,ns,0.057565784,Celf4,Celf4_Exon,18,25678928,25678977,25678928,25678929,50,+,CGATAGTTTATCAAAGACGAGGGCTGGCTCCTTAAATAAACCGCGGTGAT,"Exon (Celf4-205/Celf4, exon 2 of 2)",18,25477632,25753983,276352,2,Celf4-202,75006,Celf4-202;Celf4-201;Celf4-203;Celf4-207;Celf4-206;Celf4-209;Celf4-205,Celf4;Celf4;Celf4;Celf4;Celf4;Celf4;Celf4,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,31,59,108013,ENSMUSG00000024268,conserved gene but different region,18,25678897,25679808,912,*,912,95,0.70504386,0.852420307,0.104166667,7.22E-74,CpGisland,TRUE,NA,NRS
1565,cg08752411,0.0000039,0.00000269,1.451101328,0.147762801,gain,ns,-0.00000121,0.00000456,-0.265345047,0.790920027,neg,ns,0.001434453,0.001337045,1.072853802,0.284171161,pos,ns,0.546419999,-0.0000426,0.000046,-0.925939048,0.355197921,neg,ns,0.93989042,Zfp521,Zfp521_Intron,18,13739154,13739203,13739154,13739155,50,-,CGCCAATGAAATAACACACATCTGCATATCCACTGGGTCCCATGTTTCTT,"Intron (Zfp521-201/Zfp521, intron 5 of 7)",18,13687013,13972787,285775,2,Zfp521-201,233584,Zfp521-201;Zfp521-205;Zfp521-204,Zfp521;Zfp521;Zfp521,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,81,225207,ENSMUSG00000024420,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1932,cg13618486,-0.0000203,0.00000664,-3.052686774,0.002464433,loss,ns,-0.00000299,0.0000113,-0.265311062,0.790946181,neg,ns,-0.01204703,0.003303596,-3.646641218,0.00031153,neg,ns,3.506499838,0.000191989,0.00011361,1.689887983,0.092054696,pos,ns,0.815156523,Npas1,Npas1_Intron,7,16472395,16472444,16472395,16472396,50,-,CGCCTAATTACCGCCTGGGAAGCCGGATTATTTAAATTTAAATGGTGATT,"Intron (Npas1-202/Npas1, intron 2 of 10)",7,16455721,16475688,19968,2,Npas1-202,3244,Npas1-202;Npas1-201;Npas1-203;Npas1-204,Npas1;Npas1;Npas1;Npas1,0;0;0;5284,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,18142,ENSMUSG00000001988,conserved gene and region,7,16472318,16472451,134,*,134,12,0.485074627,1.522727273,0.089552239,6.76E-09,CpGisland,TRUE,U13,Hc-P
15387,cg05097610,-0.0000593,0.0000098,-6.05601132,4.03E-09,loss,yes,0.00000442,0.0000166,0.26528041,0.790969771,pos,ns,-0.007838489,0.004877408,-1.607101341,0.109050166,neg,ns,0.962373669,-0.0000204,0.000167734,-0.121420714,0.903436477,neg,ns,0.901135514,Gria2,Gria2_threeUTR,3,80689130,80689179,80689178,80689179,50,-,ATATACGTTGTAACCTTCCTTATAAGTTGCAAAATTCTGTGAATTCTGCG,3' UTR,3,80681450,80802835,121386,2,Gria2-201,113656,Gria2-201;Gria2-202;Gria2-203;Gria2-206,Gria2;Gria2;Gria2;Gria2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,12,19,14800,ENSMUSG00000033981,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14105,cg17177455,0.0000501,0.0000054,9.279429342,3.04E-18,gain,yes,-0.00000243,0.00000918,-0.265110686,0.791100392,neg,ns,0.009597109,0.00268976,3.56801752,0.000416596,pos,ns,3.380284664,-0.000095,0.0000925,-1.02702117,0.305211185,neg,ns,0.080039625,Hoxd11,Hoxd11_Exon,2,74679625,74679674,74679673,74679674,50,+,CAAAGTTAAGGTCAAGTTAGTGTCTTATCTTGGGTGACTCAAAATCACCG,Promoter (<=1kb),2,74679557,74687016,7460,1,Hoxd11-201,68,Hoxd11-201;Hoxd11-202;Hoxd12-201,Hoxd11;Hoxd11;Hoxd12,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,14,15431,ENSMUSG00000042499,conserved gene and region,2,74679673,74679866,194,*,194,20,0.587628866,1.2125,0.103092784,7.72E-16,CpGisland,TRUE,NA,NRS
12448,cg11882147,0.0000037,0.00000338,1.09520854,0.274275448,gain,ns,-0.00000152,0.00000574,-0.265010179,0.791177746,neg,ns,0.001978682,0.00168118,1.176959987,0.240114367,pos,ns,0.619581854,-0.0000678,0.0000578,-1.171896517,0.242138464,neg,ns,0.090264832,Onecut2,Onecut2_Exon,18,64340543,64340592,64340543,64340544,50,-,CGGGCCATGAGCAGGAGCTGCTGGCCAGCCCCAGCCCCCACCACGCGGGC,Promoter (<=1kb),18,64340020,64400987,60968,1,Onecut2-201,523,Onecut2-201,Onecut2,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,19,225631,ENSMUSG00000045991,conserved gene and region,18,64339929,64340544,616,*,616,67,0.73538961,0.829721362,0.108766234,1.14E-53,CpGisland,TRUE,NA,NRS
21928,cg26922486,-0.0000182,0.00000431,-4.231733792,0.0000306,loss,ns,0.00000194,0.00000732,0.265003187,0.791183127,pos,ns,-0.001110527,0.002144512,-0.517845925,0.604935127,neg,ns,0.218291196,-0.0000556,0.0000737,-0.75400776,0.451416897,neg,ns,0.944724151,Gm9661,Gm9661_Exon,12,109738464,109738513,109738512,109738513,50,+,ATTTGTGACGAATCATACACGGTTGACCTATTTTTCAGTACCAAATCCCG,"Exon (Mir154-201/Mir154-201, exon 1 of 1)",12,109827003,109828124,1122,1,Gm9661-201,-88490,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,8,675987,NA,mapped to different genes,12,109738421,109738552,132,*,132,9,0.492424242,1.157894737,0.068181818,0.00000904,CpGisland,TRUE,NA,NRS
18302,cg23948594,0.0000671,0.00000892,7.519805919,5.96E-13,gain,yes,0.00000401,0.0000152,0.264914723,0.791251215,pos,ns,0.013955142,0.004439142,3.143657729,0.001829998,pos,ns,2.737549401,-0.000172243,0.000152662,-1.128267409,0.260079429,neg,ns,0.168691646,Gm48316,Gm48316_Intergenic_upstream,13,94706830,94706879,94706830,94706831,50,+,CGGACACAATTGTGTGATTGATGGAGGACAAAGTGGGAACAGCAGGACAC,Distal Intergenic,13,94752270,94752593,324,1,Gm48316-201,-45391,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,36,42,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
23396,cg12753118,-0.0000058,0.000000999,-5.805303345,1.59E-08,loss,yes,-0.000000449,0.0000017,-0.264860914,0.791292629,neg,ns,-0.000191289,0.000497172,-0.384753967,0.700683531,neg,ns,0.15447809,-0.000018,0.0000171,-1.054903092,0.292291106,neg,ns,0.982413538,Ptprf,Ptprf_Intron,4,118243401,118243450,118243449,118243450,50,+,CCATTTCTGGATTATATTTCAGCTGTAACTTTTAAGTCTAATTATTTGCG,"Intron (Ptprf-201/Ptprf, intron 7 of 32)",4,118208213,118291405,83193,2,Ptprf-201,47955,Ptprf-201;Ptprf-207,Ptprf;Ptprf,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,9,19268,ENSMUSG00000033295,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18208,cg25450645,0.0000912,0.0000113,8.088869802,1.37E-14,gain,yes,-0.00000507,0.0000192,-0.264819836,0.791324246,neg,ns,0.02634818,0.005610983,4.695822442,0.00000399,pos,ns,5.398581089,-0.000431849,0.000192961,-2.238007795,0.025930458,neg,ns,0.294912538,Celf3,Celf3_Intron,3,94484251,94484300,94484251,94484252,50,-,CGGATAAATCAGGCTGAGTGGGCGGTTGCCATGGTGCGCATTCTCCCGTT,"Intron (Celf3-214/Celf3, intron 3 of 4)",3,94478295,94485318,7024,1,Celf3-214,5956,Celf3-214;Celf3-208;Celf3-204;Celf3-215;Celf3-201;Celf3-213;Celf3-212;Celf3-207;Celf3-206;Celf3-211;Celf3-205;Celf3-209;Celf3-210;Celf3-202;Celf3-203;Riiad1-202,Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Riiad1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,12,78784,ENSMUSG00000028137,conserved gene and region,3,94484222,94484339,118,*,118,11,0.652542373,0.879403794,0.093220339,2.29E-08,CpGisland,TRUE,U11,Tr-P
17076,cg22422580,0.0000247,0.00000666,3.71351785,0.000242327,gain,ns,-0.000003,0.0000113,-0.264648532,0.7914561,neg,ns,0.00174237,0.003316434,0.525374604,0.59969837,pos,ns,0.222067132,0.000330927,0.000114052,2.901547327,0.003979102,pos,ns,0.082981001,Gata2,Gata2_Intron,6,88203155,88203204,88203155,88203156,50,-,CGGATCTCCTGCCGGAGTTTCCTATCCGGACATCTGCAGCCTGAAGATAA,"Intron (Gata2-202/Gata2, intron 4 of 5)",6,88193891,88207032,13142,1,Gata2-202,9264,Gata2-202;Gata2-203;Gata2-201;Gata2-205;Gata2-204,Gata2;Gata2;Gata2;Gata2;Gata2,0;4821;0;2236;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,12,14461,ENSMUSG00000015053,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
11722,cg27209406,0.000015,0.00000538,2.79328724,0.005542045,gain,ns,0.00000242,0.00000914,0.264440657,0.791616111,pos,ns,-0.005216822,0.002678346,-1.94777778,0.052343988,neg,ns,1.281133191,0.000223177,0.0000921,2.422990528,0.015965912,pos,ns,0.903149238,Fam204a,Fam204a_Intron,19,60242404,60242453,60242404,60242405,50,+,CGGAGAGGTTTAGGGGCCTTAATTCATCACTGAATGAACAGCGTGTACAG,"Intron (Gm28351-201/Gm28351-201, intron 1 of 1)",19,60199435,60226701,27267,2,Fam204a-205,-15703,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,14,76539,ENSMUSG00000057858,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26987,cg11818729,-0.0000162,0.00000527,-3.0772903,0.002275383,loss,ns,-0.00000237,0.00000896,-0.264428226,0.79162568,neg,ns,-0.003947722,0.002625416,-1.503655907,0.133688046,neg,ns,0.873907425,0.000011,0.0000903,0.121966237,0.903004782,pos,ns,0.856333511,Mmp24,Mmp24_Exon,2,155815734,155815783,155815734,155815735,50,-,CGGGACTACTGGAAGTTTGACAACCAGAAACTGAGCGTGGAGCCAGGCTA,"Exon (Mmp24-201/Mmp24, exon 9 of 9)",2,155775342,155818366,43025,1,Mmp24-201,40392,BC029722-201;Eif6-201;Eif6-205;Eif6-207;Mmp24-201,BC029722;Eif6;Eif6;Eif6;Mmp24,3643;11142;6697;10653;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,17391,ENSMUSG00000027612,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9401,cg08846318,-0.0000122,0.00000814,-1.495381479,0.135832192,loss,ns,0.00000366,0.0000138,0.264275765,0.791743042,pos,ns,0.015422106,0.004053677,3.804473041,0.000171186,pos,ns,3.766533007,-0.000492744,0.000139406,-3.534607755,0.000470627,neg,ns,0.642563406,Zbtb16,Zbtb16_Intron,9,48658102,48658151,48658150,48658151,50,-,GGCCCCAGCAAATAATGAAGTAATGAACAGCCAAAGTGATCTAACTATCG,"Intron (Zbtb16-201/Zbtb16, intron 6 of 6)",9,48654297,48835945,181649,2,Zbtb16-201,177794,Zbtb16-201;Zbtb16-202,Zbtb16;Zbtb16,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,37,235320,ENSMUSG00000066687,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17886,cg21213437,0.0000337,0.00000542,6.225160891,1.56E-09,gain,yes,-0.00000243,0.0000092,-0.264167839,0.791826124,neg,ns,0.003708841,0.002696146,1.375608332,0.169936045,pos,ns,0.769714494,0.0000385,0.0000927,0.415255701,0.678241987,pos,ns,0.055411704,Irx5,Irx5_fiveUTR,8,92357838,92357887,92357838,92357839,50,-,CGCGCACAAGGCGTCAGAATCCTCAATTTCCAACTTAGCATCTTGGCAGG,Promoter (<=1kb),8,92357625,92376286,18662,1,Irx5-202,213,Irx5-202;Irx5-201,Irx5;Irx5,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,30,54352,ENSMUSG00000031737,conserved gene but different region,8,92357288,92357850,563,*,563,49,0.664298401,0.828737082,0.087033748,2.39E-34,CpGisland,TRUE,U3,Pr-B
2804,cg21574349,-0.000031,0.00000906,-3.421743474,0.0007057,loss,ns,-0.00000407,0.0000154,-0.264113325,0.79186809,neg,ns,0.003380712,0.004510406,0.749536126,0.454102545,pos,ns,0.342846064,-0.000102836,0.000155112,-0.662977355,0.507837709,neg,ns,0.865939114,Map3k13,Map3k13_Intron,16,21846017,21846066,21846017,21846018,50,+,CGGAATCCTAAACCAGCCCAATTTACATCCATTCATGAATCTGTGACGTC,"Intron (Map3k13-202/Map3k13, intron 2 of 14)",16,21794346,21933439,139094,1,Map3k13-202,51671,Gm5962-201;Map3k13-202;Map3k13-203,Gm5962;Map3k13;Map3k13,-4473;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,71751,ENSMUSG00000033618,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
23787,cg10491903,-0.0000164,0.0000035,-4.691397552,0.00000408,loss,ns,0.00000157,0.00000594,0.264090027,0.791886025,pos,ns,-0.001767815,0.00174056,-1.015658597,0.31058402,neg,ns,0.507820893,-0.0000285,0.0000599,-0.476855162,0.63380123,neg,ns,0.933473792,Kdm5a,Kdm5a_Exon,6,120385633,120385682,120385633,120385634,50,+,CGAAGACGAAAAGTTACCAACAGGTCAGACGCATTTAACATGCAAATGAG,"Exon (Kdm5a-206/Kdm5a, exon 7 of 21)",6,120364124,120419473,55350,1,Kdm5a-206,21509,Kdm5a-206;Kdm5a-201;Kdm5a-204;Kdm5a-209,Kdm5a;Kdm5a;Kdm5a;Kdm5a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,7,214899,ENSMUSG00000030180,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25763,cg09747999,0.0000402,0.0000119,3.370033021,0.000846634,gain,ns,0.00000535,0.0000202,0.264071933,0.791899955,pos,ns,0.011780018,0.005930209,1.986442196,0.047864492,pos,ns,1.319986546,-0.000163647,0.000203939,-0.802430291,0.422918826,neg,ns,0.237524675,Uncx,Uncx_Promoter,5,139536912,139536961,139536960,139536961,50,+,ATACAATCCAATTTCATTATATCAATCACATTTAATTGGCAATTTGTACG,Promoter (6-7kb),5,139543494,139548179,4686,1,Uncx-201,-6533,NA,NA,NA,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,22,88,22255,ENSMUSG00000029546,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
3990,cg05648843,-5.63E-09,0.00000116,-0.004845787,0.996136754,loss,ns,0.000000521,0.00000197,0.264049586,0.791917159,pos,ns,0.001526549,0.000577803,2.641991426,0.008660215,pos,ns,2.062471314,-0.0000358,0.0000199,-1.802946206,0.072367669,neg,ns,0.964659473,Luc7l,Luc7l_threeUTR,17,26257926,26257975,26257926,26257927,50,+,CGCATGGATTTAGGAGAATGTACCAAAATCCACGACTTGGCCCTCCGAGC,3' UTR,17,26252896,26280719,27824,1,Luc7l-201,5030,Luc7l-201;Luc7l-202;Luc7l-205;Luc7l-203;Luc7l-208;Luc7l-204;Luc7l-206;Luc7l-209,Luc7l;Luc7l;Luc7l;Luc7l;Luc7l;Luc7l;Luc7l;Luc7l,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,2,66978,ENSMUSG00000024188,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12857,cg05217279,-0.00000693,0.00000534,-1.297415843,0.195452805,loss,ns,0.0000024,0.00000908,0.263994172,0.791959819,pos,ns,0.000460396,0.00265965,0.173103813,0.862682797,pos,ns,0.064148862,-0.000128716,0.0000915,-1.407269503,0.160349325,neg,ns,0.90263648,Ebf2,Ebf2_Intron,14,67361715,67361764,67361715,67361716,50,-,CGACAGAAGGTGTTCTGAAACATTGGAGTACATTTGCATGTTAAATGGAG,"Intron (Ebf2-201/Ebf2, intron 7 of 16)",14,67233292,67429777,196486,1,Ebf2-201,128423,Ebf2-201;Ebf2-203;Ebf2-202,Ebf2;Ebf2;Ebf2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,21,13592,ENSMUSG00000022053,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3397,cg03552156,-0.00000107,0.000000616,-1.739149571,0.083001115,loss,ns,-0.000000276,0.00000105,-0.263876916,0.79205009,neg,ns,0.0000298,0.000306613,0.097281309,0.922565863,pos,ns,0.035002619,-0.00000746,0.0000105,-0.707350355,0.479880188,neg,ns,0.015800833,Bcl6,Bcl6_Promoter,16,23989200,23989249,23989200,23989201,50,+,CGAGAAAAATATTTGCCAAGCAGTTTTCGGTGGGTTCATTTGCTTTATTT,Promoter (<=1kb),16,23965052,23988852,23801,2,Bcl6-201,-348,Bcl6-201;Gm37419-201,Bcl6;Gm37419,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,7,18,12053,ENSMUSG00000022508,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
14423,cg06425973,-0.000000655,0.00000117,-0.5586628,0.576795177,loss,ns,0.000000525,0.00000199,0.263875897,0.792050875,pos,ns,0.000368327,0.000583297,0.631457817,0.528206558,pos,ns,0.277196211,0.00000752,0.0000201,0.374727979,0.708119,pos,ns,0.029774204,Fam98a,Fam98a_fiveUTR,17,75551768,75551817,75551816,75551817,50,-,TCAGTCTCCATGAGGTCACACTCCATGCTACTGTGGTATTCAAATTTCCG,Promoter (<=1kb),17,75544467,75551796,7330,2,Fam98a-203,0,Fam98a-201;Fam98a-204;Fam98a-205;Fam98a-203,Fam98a;Fam98a;Fam98a;Fam98a,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,6,72722,ENSMUSG00000002017,conserved gene and region,17,75551816,75552006,191,*,191,22,0.659685864,1.086068752,0.115183246,1.61E-18,CpGisland,TRUE,U2,Pr-W
5364,cg02839060,0.00000437,0.00000218,2.006764705,0.045642759,gain,ns,0.000000975,0.0000037,0.263856537,0.79206578,pos,ns,0.002613842,0.001082814,2.413935124,0.016360545,pos,ns,1.786202245,-0.0000881,0.0000372,-2.365579776,0.018617039,neg,ns,0.056765547,Lmx1b,Lmx1b_Intron,2,33616833,33616882,33616833,33616834,50,+,CGAGAACAGAGATAAAATGATTAAAAACTGCCAAGCGGGCCTGGCAATCA,"Intron (Lmx1b-201/Lmx1b, intron 2 of 7)",2,33560965,33640608,79644,2,Lmx1b-201,23726,Lmx1b-201;Lmx1b-203;Lmx1b-204;Lmx1b-202,Lmx1b;Lmx1b;Lmx1b;Lmx1b,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,26,16917,ENSMUSG00000038765,conserved gene and region,2,33616825,33617025,201,*,201,14,0.606965174,0.75624832,0.069651741,7.35E-09,CpGisland,TRUE,NA,NRS
24594,cg23665306,0.0000406,0.0000386,1.051652593,0.293778042,gain,ns,0.0000173,0.0000656,0.263827563,0.792088086,pos,ns,0.09281416,0.019225775,4.827590119,0.00000217,pos,ns,5.662821515,-0.003116343,0.000661173,-4.71335602,0.00000369,neg,ns,0.484360019,Ank2,Ank2_Exon,3,127077540,127077589,127077588,127077589,50,-,GAACTTTGACAACTTCTGCTTGTCCAGCCAAAGATGCAATGTGAAGAGCG,"Exon (Ank2-208/Ank2, exon 5 of 46)",3,126921614,127409059,487446,2,Ank2-208,331470,Ank2-208;Ank2-207;Ank2-218;Ank2-220;Ank2-203;Ank2-214;Ank2-221;Ank2-217;Ank2-213;Ank2-205;Ank2-228;Ank2-223,Ank2;Ank2;Ank2;Ank2;Ank2;Ank2;Ank2;Ank2;Ank2;Ank2;Ank2;Ank2,0;0;0;0;0;0;0;0;0;84649;47273;331365,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,7,109676,ENSMUSG00000032826,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10751,cg05791038,0.00000229,0.000000648,3.526242348,0.000485149,gain,ns,-0.00000029,0.0000011,-0.263767928,0.792133999,neg,ns,0.000508485,0.000322622,1.576100476,0.116022567,pos,ns,0.93545753,0.00000755,0.0000111,0.68009247,0.496953479,pos,ns,0.012628143,Jph4,Jph4_Exon,14,55114974,55115023,55114974,55114975,50,+,CGCTTTCCCACACGCCGCTGCGCCCCTTCAGCCCGCCCAGCCACTCGCCG,"Exon (Jph4-201/Jph4, exon 2 of 6)",14,55106826,55116935,10110,2,Jph4-201,1912,Jph4-201;Jph4-202;Jph4-203;Jph4-204,Jph4;Jph4;Jph4;Jph4,0;0;-4416;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,11,319984,ENSMUSG00000022208,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
3214,cg19755705,-0.00000702,0.00000168,-4.190348866,0.0000364,loss,ns,0.000000751,0.00000285,0.263703553,0.792183562,pos,ns,0.001874741,0.000834206,2.247336861,0.025321559,pos,ns,1.596509566,-0.000057,0.0000287,-1.988572393,0.047627405,neg,ns,0.084847508,Xpo1,Xpo1_fiveUTR,11,23256061,23256110,23256061,23256062,50,+,CGCGGCAGGAGCAGCGGGAGCTACAGCATCAGCAAGAGCAACAGTAGCTA,Promoter (<=1kb),11,23256078,23298249,42172,1,Xpo1-202,0,Xpo1-201;Xpo1-204;Xpo1-203;Xpo1-206;Xpo1-202;Xpo1-205,Xpo1;Xpo1;Xpo1;Xpo1;Xpo1;Xpo1,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,14,103573,ENSMUSG00000020290,conserved gene and region,11,23255743,23256076,334,*,334,31,0.676646707,0.821746032,0.092814371,7.76E-23,CpGisland,TRUE,U1,Pr-A
1509,cg23445360,-0.000000107,0.00000148,-0.072382499,0.94234419,loss,ns,0.000000664,0.00000252,0.26354948,0.792302187,pos,ns,0.000266622,0.000738453,0.361054802,0.718304407,pos,ns,0.143691469,0.00000443,0.0000254,0.174606371,0.86150292,pos,ns,0.037006054,Ncoa2,Ncoa2_fiveUTR,1,13374029,13374078,13374029,13374030,50,-,CGTGTTAATAACTGCTGCCTGGTTGTTTATTTCAATGGAGATCCTCCCCC,Promoter (<=1kb),1,13165925,13374029,208105,2,Ncoa2-207,0,Ncoa2-203;Ncoa2-202;Ncoa2-201;Ncoa2-210;Ncoa2-207;Ncoa2-206;Ncoa2-204,Ncoa2;Ncoa2;Ncoa2;Ncoa2;Ncoa2;Ncoa2;Ncoa2,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,6,17978,ENSMUSG00000005886,conserved gene and region,1,13372857,13374030,1174,*,1174,165,0.803236797,0.893043198,0.140545145,2.01E-152,CpGisland,TRUE,U1,Pr-A
9465,cg14689355.1,0.0000011,0.00000187,0.59020325,0.555484367,gain,ns,0.000000836,0.00000318,0.263307139,0.792488783,pos,ns,0.002377235,0.000930667,2.554335023,0.011116954,pos,ns,1.95401418,-0.0000556,0.000032,-1.73810013,0.083186137,neg,ns,0.073619376,Acvr2a,Acvr2a_fiveUTR,2,48814452,48814501,48814452,48814453,50,+,CGGAGCTGACAGTGATTTTGACAGTGATTTAAACCCGCTTTTGTTGTTGT,Promoter (<=1kb),2,48814109,48903269,89161,1,Acvr2a-201,343,Acvr2a-201;Gm13489-201,Acvr2a;Gm13489,0;-3897,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,7,10,11480,ENSMUSG00000052155,conserved gene but different region,2,48813661,48814558,898,*,898,142,0.74610245,1.137266444,0.158129176,3.41E-140,CpGisland,TRUE,U1,Pr-A
7671,cg20048963,0.0000307,0.00000538,5.701228791,2.77E-08,gain,yes,0.00000241,0.00000914,0.263298224,0.792495647,pos,ns,0.003193454,0.002676296,1.1932366,0.233689134,pos,ns,0.631361481,-0.000131023,0.000092,-1.423580945,0.155573494,neg,ns,0.93191282,Zbtb20,Zbtb20_threeUTR,16,43618711,43618760,43618711,43618712,50,+,CGACCACATGAGGATGCATGTGTCTGACGGATAAGTAGTATCTTTCTCTC,3' UTR,16,42907652,43642602,734951,1,Zbtb20-204,711059,Zbtb20-204;Zbtb20-201;Zbtb20-203;Zbtb20-202;Zbtb20-205,Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,9,98,56490,ENSMUSG00000022708,conserved gene but different region,16,43618553,43618783,231,*,231,17,0.597402597,0.833404075,0.073593074,4.87E-11,CpGisland,TRUE,U11,Tr-P
6963,cg23789576,0.00000826,0.00000641,1.288712117,0.19845909,gain,ns,0.00000287,0.0000109,0.263238281,0.792541804,pos,ns,0.004463331,0.003188888,1.399651414,0.16261762,pos,ns,0.7888324,-0.0000388,0.000109666,-0.353600056,0.723878986,neg,ns,0.856871263,Lsamp,Lsamp_Intron,16,40234491,40234540,40234491,40234492,50,+,CGAGGTTTGTTTCTTGACAAATGTCCCATTTTCACAGGCAGTTGAACCGA,"Intron (Lsamp-207/Lsamp, intron 1 of 2)",16,39984361,40979709,995349,1,Lsamp-207,250130,Lsamp-207;Lsamp-206;Lsamp-208;Lsamp-210;Lsamp-209,Lsamp;Lsamp;Lsamp;Lsamp;Lsamp,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,23,268890,ENSMUSG00000061080,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7682,cg09018975,-0.00000582,0.00000236,-2.472324676,0.01396019,loss,ns,0.00000105,0.000004,0.263092719,0.79265389,pos,ns,-0.003068436,0.001172331,-2.617379438,0.009295379,neg,ns,2.031732904,0.0000585,0.0000403,1.452089153,0.147488144,pos,ns,0.966146243,Npr2,Npr2_Exon,4,43643309,43643358,43643309,43643310,50,-,CGCCTCCATGTTGCCCTTGGCCCCAGCGGGGATCCAGTTACGGCTCGCTC,"Exon (Npr2-201/Npr2, exon 9 of 22)",4,43631935,43651244,19310,1,Npr2-201,11374,Npr2-201;Npr2-202;Npr2-204;Npr2-208;Npr2-203;Npr2-205;Npr2-209;Npr2-206;Npr2-207;Npr2-210,Npr2;Npr2;Npr2;Npr2;Npr2;Npr2;Npr2;Npr2;Npr2;Npr2,0;0;0;2054;0;0;0;0;-3839;-4647,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,Exon,10,10,230103,ENSMUSG00000028469,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9057,cg09407561,-0.0000059,0.00000159,-3.710267203,0.000245325,loss,ns,-0.000000711,0.0000027,-0.263092412,0.792654127,neg,ns,-0.000911618,0.000791459,-1.151818327,0.250283256,neg,ns,0.601568203,-0.0000455,0.0000272,-1.673001475,0.095335795,neg,ns,0.030439314,Irf2,Irf2_fiveUTR,8,46739778,46739827,46739778,46739779,50,+,CGATCTGGACTGTTCTCAGGCAAGCCGGGGAGTAACTTTTAGTTTTGCTC,Promoter (<=1kb),8,46739784,46837798,98015,1,Irf2-202,0,Irf2-201;Irf2-205;Irf2-210;Irf2-202;Irf2-204;Irf2-203,Irf2;Irf2;Irf2;Irf2;Irf2;Irf2,0;0;0;0;-201;-439,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,4,16363,ENSMUSG00000031627,conserved gene and region,8,46739336,46739847,512,*,512,41,0.642578125,0.776331361,0.080078125,2.50E-27,CpGisland,TRUE,U1,Pr-A
17164,cg20008987,-0.0000171,0.00000666,-2.565055292,0.01078633,loss,ns,-0.00000297,0.0000113,-0.262973028,0.792746059,neg,ns,-0.005265178,0.003312904,-1.589294243,0.113013286,neg,ns,0.946870498,-0.000000569,0.00011393,-0.004990759,0.996021177,neg,ns,0.903914877,Sall1,Sall1_Intergenic_downstream,8,88973517,88973566,88973517,88973518,50,-,CGTTTTATCTAAAAGGTCAATTCTTTCAGCGGGGCACCAAGCAGAATTGA,Distal Intergenic,8,89027235,89044162,16928,2,Sall1-201,70645,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,15,58198,ENSMUSG00000031665,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7397,cg08271353,0.0000607,0.0000063,9.636184525,2.15E-19,gain,yes,0.00000282,0.0000107,0.262919785,0.792787059,pos,ns,0.000594385,0.003136992,0.189476152,0.849843642,pos,ns,0.07066097,0.00037401,0.000107881,3.466876169,0.000600916,pos,ns,0.784130238,Pou3f3,Pou3f3_Intergenic_upstream,1,42540351,42540400,42540351,42540352,50,+,CGATTTAGTGGAATGCAATTAGGAAGCCTAAATTAAGTGGTAATGGAGAA,Distal Intergenic,1,42694925,42703176,8252,1,Pou3f3-202,-154525,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,37,18993,ENSMUSG00000045515,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
825,cg08415410,-0.000000421,0.000000561,-0.751690176,0.452807701,loss,ns,0.00000025,0.000000952,0.262918346,0.792788167,pos,ns,0.000326209,0.00027902,1.169125682,0.243251184,pos,ns,0.613945038,-0.0000208,0.0000096,-2.167944447,0.030923541,neg,ns,0.982538393,1810013L24Rik,1810013L24Rik_Exon,16,8855774,8855823,8855822,8855823,50,+,ACCTTTTTTCTTCTTCCTAGGTCTTAGTGGTGCAATGGCTAGTATAAGCG,"Exon (1810013L24Rik-201/1810013L24Rik, exon 4 of 4)",16,8830100,8858922,28823,1,1810013L24Rik-201,25674,1810013L24Rik-201,1810013L24Rik,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,18,19,69053,ENSMUSG00000022507,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11711,cg11114258,0.0000465,0.0000104,4.471383392,0.0000109,gain,ns,0.00000464,0.0000177,0.262904513,0.79279882,pos,ns,-0.011952289,0.005171705,-2.311092394,0.021483538,neg,ns,1.667894198,0.000730625,0.000177855,4.107989527,0.0000511,pos,ns,0.687404119,Rai1,Rai1_Intron,11,60177409,60177458,60177457,60177458,50,+,AATAAAATTATACCAAGCAGTTTGCGGTGTGGCAGGCGGCCAGAAAAGCG,"Intron (Rai1-201/Rai1, intron 2 of 5)",11,60105013,60199195,94183,1,Rai1-201,72396,Rai1-201;Rai1-205;Rai1-204;Rai1-207;Rai1-202;Rai1-203,Rai1;Rai1;Rai1;Rai1;Rai1;Rai1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,6,19377,ENSMUSG00000062115,conserved gene and region,11,60177433,60177548,116,*,116,11,0.629310345,0.962292609,0.094827586,0.000000019,CpGisland,TRUE,U12,Tr-I
26068,cg06911307,-0.000016,0.00000339,-4.706891553,0.0000038,loss,ns,-0.00000152,0.00000576,-0.262883896,0.792814696,neg,ns,-0.00395562,0.001688436,-2.342771589,0.019773269,neg,ns,1.703921517,0.0000311,0.0000581,0.53570648,0.592545552,pos,ns,0.949517668,Sox5,Sox5_Intron,6,143612198,143612247,143612198,143612199,50,+,CGAGGCAAGCAAGGTTTAATATGTATCTAAATAATTAAGCTAATTGTGTA,"Intron (1700060C16Rik-201/1700060C16Rik-201, intron 4 of 4)",6,143861441,143947088,85648,2,Sox5-206,334841,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,71,20678,ENSMUSG00000041540,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17627,cg20468890,0.00000617,0.0000141,0.43741907,0.662112033,gain,ns,-0.0000063,0.000024,-0.2628772,0.792819853,neg,ns,0.016049626,0.007018816,2.286657192,0.022889803,pos,ns,1.640357943,-0.00050069,0.000241377,-2.074310903,0.038875504,neg,ns,0.887074892,Olig1,Olig1_Intron,16,91301640,91301689,91301688,91301689,50,-,TGCTTAATTAAGTTGTTCAGTAGAAGGCTGGTCAAACAGTTGCATCTACG,"Intron (Gm15966-209/Gm15966-209, intron 1 of 2)",16,91269772,91271933,2162,1,Olig1-201,31917,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,9,50914,ENSMUSG00000046160,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
243,cg01038699,-0.000012,0.00000772,-1.554971674,0.120973104,loss,ns,0.00000345,0.0000131,0.262713849,0.792945649,pos,ns,0.005931766,0.003842198,1.543846777,0.123645639,pos,ns,0.907821198,-0.000181001,0.000132133,-1.36984106,0.171727876,neg,ns,0.836732486,Gm21992,Gm21992_Exon,19,4803568,4803617,4803568,4803569,50,-,CGATAGCCAACACCCAAAGAGGCAGAAGGCTGGGCCCTGTAGGCAGCTCC,"Exon (Rbm14-201/Rbm14, exon 2 of 3)",19,4742913,4811612,68700,2,Gm21992-203,7995,Gm21992-203;Gm21992-206;Gm21992-204;Gm21992-201;Gm21992-205;Gm21992-202;Rbm14-201;Rbm14-202;Rbm14-203,Gm21992;Gm21992;Gm21992;Gm21992;Gm21992;Gm21992;Rbm14;Rbm14;Rbm14,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,27,48,102902673,ENSMUSG00000096370,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13300,cg14703262,-0.0000591,0.00000893,-6.618275462,1.60E-10,loss,yes,-0.00000398,0.0000152,-0.262680756,0.792971135,neg,ns,0.005152215,0.004443612,1.159465431,0.247158798,pos,ns,0.607023925,-0.000645089,0.000152815,-4.221358194,0.0000319,neg,ns,0.181780725,Egr3,Egr3_Intergenic_upstream,14,70066202,70066251,70066202,70066203,50,-,CGGCCACAGGCCCCTGGGCTTCTACTCCAATGGAACAAAAGTTGCTCAAA,Distal Intergenic,14,70077203,70079955,2753,1,Egr3-201,-11001,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,19,13655,ENSMUSG00000033730,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10717,cg18916523,-0.00000105,0.00000107,-0.982378203,0.326679627,loss,ns,-0.000000476,0.00000181,-0.262650173,0.792994687,neg,ns,-0.000804461,0.000530823,-1.515497208,0.130665505,neg,ns,0.88383905,0.0000376,0.0000183,2.059672648,0.040264505,pos,ns,0.978865154,Zfp462,Zfp462_Exon,4,55008804,55008853,55008804,55008805,50,+,CGCTGGTGTGACCACATGATGAAGAAACACCGCAGTATGGTCAAGATCCT,"Exon (Zfp462-203/Zfp462, exon 3 of 13)",4,54947976,55083563,135588,1,Zfp462-203,60828,Zfp462-204;Zfp462-203;Zfp462-201;Zfp462-202,Zfp462;Zfp462;Zfp462;Zfp462,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,23,242466,ENSMUSG00000060206,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25991,cg16845429,0.00000216,0.00000422,0.51092275,0.609768813,gain,ns,-0.00000188,0.00000717,-0.262617495,0.793019854,neg,ns,-0.000621358,0.002100662,-0.295791436,0.767587399,neg,ns,0.114872163,-0.000140134,0.0000722,-1.939797051,0.053311185,neg,ns,0.811956323,Tmem164,Tmem164_Exon,X,142834171,142834220,142834219,142834220,50,-,CCTTGTCCCTGCAGGTCACCGAAGTGAATTTGAACAACATGCTGTGTCCG,"Exon (Tmem164-204/Tmem164, exon 6 of 7)",20,142681406,142843494,162089,1,Tmem164-204,152765,Tmem164-204;Tmem164-202;Tmem164-205;Tmem164-201;Tmem164-206;Tmem164-208;Tmem164-209;Tmem164-203,Tmem164;Tmem164;Tmem164;Tmem164;Tmem164;Tmem164;Tmem164;Tmem164,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,15,209497,ENSMUSG00000047045,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23622,cg20654074,-0.0000216,0.00000837,-2.580658501,0.010320802,loss,ns,0.00000373,0.0000142,0.262340596,0.793233111,pos,ns,-0.003651456,0.004164921,-0.87671684,0.381319335,neg,ns,0.418711173,0.0000614,0.000143231,0.42888801,0.66830261,pos,ns,0.201525072,Dll4,Dll4_Intron,2,119327429,119327478,119327429,119327430,50,+,CGCTCCTTTGGAAAGGGAATAATGGCTTTGGGATGTTGTTCTGACACAGA,"Intron (Dll4-201/Dll4, intron 3 of 10)",2,119325784,119335962,10179,1,Dll4-201,1645,Dll4-201;Dll4-202,Dll4;Dll4,0;-1060,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,20,54485,ENSMUSG00000027314,conserved gene but different region,2,119327100,119327430,331,*,331,31,0.637462236,0.947985957,0.093655589,5.80E-23,CpGisland,TRUE,U3,Pr-B
9211,cg11203083,-0.00000136,0.00000361,-0.375983729,0.707186161,loss,ns,0.00000161,0.00000613,0.262336593,0.793236194,pos,ns,0.001553663,0.001794481,0.865800833,0.387268949,pos,ns,0.411987323,-0.0000415,0.0000617,-0.673224841,0.501305836,neg,ns,0.893956183,Cadm1,Cadm1_Intron,9,47568145,47568194,47568145,47568146,50,-,CGGTTTACTAATTGGTAGATAATGCTGAGTACATTGATGTTGACATGAGC,"Intron (Cadm1-204/Cadm1, intron 1 of 9)",9,47530173,47853385,323213,1,Cadm1-204,37972,Cadm1-204;Cadm1-209;Cadm1-206;Cadm1-202;Cadm1-203;Cadm1-207;Cadm1-205;Cadm1-211;Cadm1-210;Cadm1-208;Cadm1-201,Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,77,54725,ENSMUSG00000032076,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16226,cg21017889,0.0000184,0.00000353,5.22336815,0.000000323,gain,yes,-0.00000157,0.00000599,-0.262311937,0.793255184,neg,ns,0.001394316,0.001755448,0.794279419,0.427640395,pos,ns,0.368921278,0.0000545,0.0000604,0.902517541,0.367482721,pos,ns,0.919914792,Bnc2,Bnc2_Intron,4,84616074,84616123,84616074,84616075,50,+,CGGCTGAGTGAATCGCTACCAGATGCAAATCTCTCAATCGTCAAGGGAAG,"Intron (Bnc2-201/Bnc2, intron 1 of 7)",4,84275095,84675034,399940,2,Bnc2-201,58911,Bnc2-201;Bnc2-202;Bnc2-214;Bnc2-215;Bnc2-206;Bnc2-211;Bnc2-217;Bnc2-207;Bnc2-203;Bnc2-209;Bnc2-204;Bnc2-210,Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,91,242509,ENSMUSG00000028487,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9416,cg21401171,-0.00000365,0.00000145,-2.513217666,0.012470503,loss,ns,-0.000000648,0.00000247,-0.262263803,0.793292257,neg,ns,0.000186493,0.000723609,0.257725941,0.796789425,pos,ns,0.098656439,-0.0000339,0.0000249,-1.360918874,0.174527845,neg,ns,0.965308832,Zbtb16,Zbtb16_Intron,9,48678466,48678515,48678466,48678467,50,+,CGGCCCATAGTTTCAATCTCGTTTACTATAGAGAAAACTCTGCTAGCTGT,"Intron (Zbtb16-201/Zbtb16, intron 4 of 6)",9,48654297,48835945,181649,2,Zbtb16-201,157430,Zbtb16-201;Zbtb16-202,Zbtb16;Zbtb16,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,37,235320,ENSMUSG00000066687,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27855,cg23596786,-0.000031,0.0000102,-3.039641499,0.00257043,loss,ns,0.00000455,0.0000173,0.262212742,0.793331585,pos,ns,0.000229522,0.005080749,0.045174846,0.963997029,pos,ns,0.015924304,-0.000309728,0.000174727,-1.772642766,0.077269927,neg,ns,0.806448893,Ush2a,Ush2a_Intron,1,188584868,188584917,188584916,188584917,50,+,ACTTTAAGTCAAACTTTTTCATTCTGTATTCAAAGGTAATGGATTTTTCG,"Intron (Ush2a-201/Ush2a, intron 31 of 70)",1,188263034,188965041,702008,1,Ush2a-201,321834,Ush2a-201;Ush2a-204,Ush2a;Ush2a,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,33,36,22283,ENSMUSG00000026609,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18935,cg05039262,-0.00000398,0.00000785,-0.506601023,0.612794911,loss,ns,-0.0000035,0.0000133,-0.262198302,0.793342707,neg,ns,0.002164013,0.0039076,0.553795882,0.580117769,pos,ns,0.236483832,-0.000476127,0.000134382,-3.543082083,0.000456332,neg,ns,0.770251139,Dach1,Dach1_Intron,14,97963808,97963857,97963856,97963857,50,-,ATCAGCAGTTACAGCTGTGCACTCAATCCGGCTCCATCTCTTGAGTCTCG,"Intron (Dach1-201/Dach1, intron 3 of 10)",14,97786853,98169543,382691,2,Dach1-201,205686,Dach1-201;Dach1-202;Dach1-203,Dach1;Dach1;Dach1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,76,13134,ENSMUSG00000055639,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8913,cg02604675,-0.000000786,0.00000207,-0.380531476,0.703811551,loss,ns,0.000000921,0.00000351,0.262182784,0.79335466,pos,ns,0.001180245,0.001028615,1.147411959,0.252096148,pos,ns,0.59843379,-0.0000216,0.0000354,-0.609816376,0.542430175,neg,ns,0.059242781,Helt,Helt_Promoter,8,46295363,46295412,46295363,46295364,50,-,CGGTAAATGTCATTAGAAAGGGAGAAACAATCGCGCTTAGAGGGCTCTGA,Promoter (<=1kb),8,46292039,46294671,2633,2,Helt-201,-741,Helt-201;Helt-202;Helt-203,Helt;Helt;Helt,0;-1374;-2028,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,15,22,234219,ENSMUSG00000047171,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
14509,cg00281640,-0.0000131,0.00000261,-5.028726551,0.000000837,loss,yes,-0.00000116,0.00000443,-0.262182061,0.793355216,neg,ns,-0.001785476,0.001298451,-1.375081407,0.170099168,neg,ns,0.769297811,-0.0000226,0.0000447,-0.505712407,0.613417951,neg,ns,0.955380287,Ptprd,Ptprd_Exon,4,76086035,76086084,76086083,76086084,50,-,AACTGGACACTGGGACTATATGGCCCGGGCCCTTTGCTCGTATGAGCACG,"Exon (Ptprd-206/Ptprd, exon 18 of 36)",4,75941238,76449980,508743,2,Ptprd-206,363896,Ptprd-206;Ptprd-204;Ptprd-213;Ptprd-220;Ptprd-203;Ptprd-217;Ptprd-218;Ptprd-219;Ptprd-201;Ptprd-222;Ptprd-214;Ptprd-216,Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,13,32,19266,ENSMUSG00000028399,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16932,cg17537062,0.0000749,0.00000481,15.57125758,8.65E-41,gain,yes,-0.00000214,0.00000817,-0.262118559,0.793404127,neg,ns,0.01014829,0.002394762,4.237703128,0.0000298,pos,ns,4.52548479,-0.000081,0.0000824,-0.983366149,0.326194114,neg,ns,0.132580758,Cbln1,Cbln1_Exon,8,87471760,87471809,87471760,87471761,50,-,CGATGAAAGTGCTGCGTTCTGAATCAAAGTTGTTCCCAATGTTCACTAGT,Promoter (<=1kb),8,87468405,87472609,4205,2,Cbln1-201,800,Cbln1-201;Cbln1-203;Cbln1-202,Cbln1;Cbln1;Cbln1,0;-692;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,4,12404,ENSMUSG00000031654,conserved gene but different region,8,87471724,87471907,184,*,184,14,0.543478261,1.040808081,0.076086957,2.30E-09,CpGisland,TRUE,U13,Hc-P
2776,cg24644551,0.0000279,0.00000467,5.96353981,6.72E-09,gain,yes,0.00000208,0.00000794,0.262061971,0.793447714,pos,ns,0.004567577,0.002325902,1.963787266,0.050448185,pos,ns,1.29715445,0.000047,0.00008,0.587398558,0.55736365,pos,ns,0.077735961,Prdm13,Prdm13_Promoter,4,21689368,21689417,21689416,21689417,50,-,AACGGCTCAATAAAAGTATTCAGAATCCCTCTCAAGTTGCCTTTTAACCG,Promoter (3-4kb),4,21677480,21685963,8484,2,Prdm13-205,-3454,Prdm13-205;Prdm13-201;Prdm13-202;Prdm13-203;Prdm13-206;Prdm13-204,Prdm13;Prdm13;Prdm13;Prdm13;Prdm13;Prdm13,0;0;0;0;0;-3523,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,19,23,230025,ENSMUSG00000040478,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13621,cg01821161,0.0000758,0.00000559,13.5436493,3.80E-33,gain,yes,0.00000249,0.0000095,0.262013058,0.793485389,pos,ns,0.008677257,0.002784482,3.116291204,0.002002882,pos,ns,2.69834472,-0.0000148,0.0000958,-0.154306001,0.877468875,neg,ns,0.207585092,Dlx1,Dlx1_Intron,2,71536284,71536333,71536332,71536333,50,+,AAAAAAATCAAATAGGTGCGAGCTGCCATCTCTGCAATTCTCTGGTACCG,"Intron (Dlx1as-204/Dlx1as-204, intron 1 of 1)",2,71530780,71532689,1910,1,Dlx1-206,5504,Dlx1-201;Dlx1-204;Dlx1-203;Dlx1-206,Dlx1;Dlx1;Dlx1;Dlx1,0;0;0;5504,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,36,13390,ENSMUSG00000041911,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
21496,cg15622040,-0.00000128,0.000000757,-1.695761216,0.090935105,loss,ns,-0.000000337,0.00000129,-0.261961431,0.793525155,neg,ns,0.000406696,0.000376728,1.079549713,0.281181951,pos,ns,0.55101256,-0.0000324,0.000013,-2.499623509,0.012949233,neg,ns,0.014321453,Ip6k1,Ip6k1_fiveUTR,9,108002620,108002669,108002620,108002621,50,-,CGCCCCCTCGGCTAGCCGCCATCTTGTTGTTGATCCGTACCCAGTGGGCA,Promoter (<=1kb),9,108002629,108044847,42219,1,Ip6k1-202,0,Cdhr4-211;Cdhr4-206;Cdhr4-212;Cdhr4-201;Cdhr4-204;Cdhr4-202;Cdhr4-203;Cdhr4-207;Cdhr4-213;Cdhr4-208;Gm20662-202;Gm20662-201;Gm20662-203;Ip6k1-201;Ip6k1-202;Ip6k1-210;Ip6k1-203;Ip6k1-208;Ip6k1-204,Cdhr4;Cdhr4;Cdhr4;Cdhr4;Cdhr4;Cdhr4;Cdhr4;Cdhr4;Cdhr4;Cdhr4;Gm20662;Gm20662;Gm20662;Ip6k1;Ip6k1;Ip6k1;Ip6k1;Ip6k1;Ip6k1,10123;6930;6888;6857;6714;6676;6004;5248;5027;4942;0;0;0;0;0;0;0;0;-2,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,2,27399,ENSMUSG00000032594,conserved gene but different region,9,108002579,108002930,352,*,352,38,0.741477273,0.796664681,0.107954546,1.56E-30,CpGisland,TRUE,U1,Pr-A
27036,cg05734549,0.0000105,0.00000385,2.72273052,0.006841082,gain,ns,-0.00000171,0.00000654,-0.261956006,0.793529334,neg,ns,0.003498474,0.001915854,1.826065134,0.06880223,pos,ns,1.162397486,-0.000123298,0.0000659,-1.871387012,0.06223316,neg,ns,0.91517056,Dlgap4,Dlgap4_fiveUTR,2,156748315,156748364,156748315,156748316,50,+,CGTTGTCCTTCAATAAGGTTGACTGCATTCAGCCAGTGCCAAAAGAGGAG,5' UTR,2,156613705,156764361,150657,1,Dlgap4-205,134610,Dlgap4-205;Dlgap4-212;Dlgap4-206;Dlgap4-202;Dlgap4-210;Dlgap4-209;Dlgap4-204;Dlgap4-208;Dlgap4-211;Dlgap4-214;Dlgap4-213;Dlgap4-201;Dlgap4-203,Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,10,17,228836,ENSMUSG00000061689,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17504,cg00426659,-0.0000306,0.0000144,-2.127721468,0.034149063,loss,ns,0.0000064,0.0000244,0.261914676,0.79356117,pos,ns,-0.002373988,0.007154507,-0.331817112,0.740251586,neg,ns,0.130620654,-0.000197698,0.000246043,-0.803512304,0.422294361,neg,ns,0.25290715,Anks1b,Anks1b_fiveUTR,10,90576932,90576981,90576932,90576933,50,-,CGCTGAGAACATTAATCTGTCAAGCTGGCGGGCTCCTTTGATAGCAACTT,Promoter (<=1kb),10,90576965,90970219,393255,1,Anks1b-217,0,Anks1b-233;Anks1b-222;Anks1b-203;Anks1b-214;Anks1b-215;Anks1b-208;Anks1b-210;Anks1b-221;Anks1b-219;Anks1b-213;Anks1b-216;Anks1b-224;Anks1b-206;Anks1b-207;Anks1b-209;Anks1b-231;Anks1b-218;Anks1b-217;Anks1b-201,Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,9,14,77531,ENSMUSG00000058589,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15113,cg18586457,-0.00000781,0.00000221,-3.540331946,0.000460926,loss,ns,-0.000000982,0.00000375,-0.261914273,0.79356148,neg,ns,-0.000932776,0.001098203,-0.849365903,0.396333165,neg,ns,0.401939585,0.000035,0.0000378,0.925945997,0.355194316,pos,ns,0.953004615,Zfp827,Zfp827_threeUTR,8,79189905,79189954,79189905,79189906,50,-,CGGCCCTTCCACTGTGACCAGTGCAGCTACAGCTGCAAGCGCAAGGACAA,3' UTR,8,79028437,79193743,165307,1,Zfp827-202,161468,Zfp827-202;Zfp827-203;Zfp827-209;Zfp827-206;Zfp827-205;Zfp827-207;Zfp827-204,Zfp827;Zfp827;Zfp827;Zfp827;Zfp827;Zfp827;Zfp827,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,threeUTR,12,28,622675,ENSMUSG00000071064,conserved gene and region,8,79189795,79190007,213,*,213,16,0.61971831,0.797192983,0.075117371,1.49E-10,CpGisland,TRUE,U11,Tr-P
997,cg22527990,-0.00000513,0.000006,-0.854201825,0.393652778,loss,ns,-0.00000267,0.0000102,-0.261841046,0.793617886,neg,ns,-0.005357427,0.002987535,-1.793260062,0.07390601,neg,ns,1.131320246,0.000091,0.000102741,0.886040311,0.376282606,pos,ns,0.812516732,Syt7,Syt7_threeUTR,19,10430395,10430444,10430443,10430444,50,+,TGCCAATATCCCTGACCTGCAAAACCCAGGAACCCAGCAGAACCAGAACG,3' UTR,19,10389090,10448444,59355,1,Syt7-201,41305,Syt7-201;Syt7-208;Syt7-203;Syt7-202;Syt7-210;Syt7-211;Syt7-204;Syt7-205;Syt7-207;Syt7-209;Syt7-213;Syt7-214;Syt7-215;Syt7-212,Syt7;Syt7;Syt7;Syt7;Syt7;Syt7;Syt7;Syt7;Syt7;Syt7;Syt7;Syt7;Syt7;Syt7,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,9,10,54525,ENSMUSG00000024743,conserved gene and region,19,10430443,10430555,113,*,113,10,0.707964602,0.722506394,0.088495575,0.000000205,CpGisland,TRUE,U11,Tr-P
5989,cg02476808,0.00000835,0.00000271,3.083952709,0.002226539,gain,ns,0.0000012,0.0000046,0.261793916,0.79365419,pos,ns,-0.000579242,0.001346861,-0.430068326,0.667444747,neg,ns,0.175584681,0.0000456,0.0000463,0.98523767,0.325275672,pos,ns,0.883525149,Dab2ip,Dab2ip_threeUTR,2,35719877,35719926,35719925,35719926,50,-,GTCTCCAACCCCCGAAAACAAGGACTTGTTTTTTGTCACAAGGTCCTCCG,3' UTR,2,35558266,35730994,172729,1,Dab2ip-205,161611,Dab2ip-205;Dab2ip-206;Dab2ip-209;Dab2ip-211;Dab2ip-202;Dab2ip-207;Dab2ip-203;Dab2ip-201;Dab2ip-208;Dab2ip-204;Dab2ip-213,Dab2ip;Dab2ip;Dab2ip;Dab2ip;Dab2ip;Dab2ip;Dab2ip;Dab2ip;Dab2ip;Dab2ip;Dab2ip,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,9,12,69601,ENSMUSG00000026883,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15063,cg04647200,-0.0000365,0.0000135,-2.70105176,0.007292165,loss,ns,0.000006,0.0000229,0.261770648,0.793672114,pos,ns,0.042410741,0.006720576,6.310581225,9.59E-10,pos,ns,9.017987538,-0.001778167,0.00023112,-7.693692863,1.92E-13,neg,yes,0.413411827,Elfn2,Elfn2_Intergenic_upstream,15,78735908,78735957,78735956,78735957,50,+,GGCTTTGTTACTGATGGTTTTTAATTATGTAAATCAGCCCAGGGCCTGCG,Distal Intergenic,15,78670007,78718771,48765,2,Elfn2-201,-17137,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,4,207393,ENSMUSG00000043460,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13934,cg00783674,0.000000639,0.00000101,0.634094651,0.526486666,gain,ns,-0.000000448,0.00000171,-0.2617443,0.793692409,neg,ns,0.00092139,0.000501609,1.836869639,0.067186369,pos,ns,1.172718829,-0.0000411,0.0000173,-2.384455863,0.017705529,neg,ns,0.020117873,Chd2,Chd2_fiveUTR,7,73541471,73541520,73541519,73541520,50,-,GCGCCATGGCTTCTAAGCTGGAAAAAACAACGACCTGGGCTCTCAGTACG,Promoter (<=1kb),7,73426638,73541746,115109,2,Chd2-203,226,Chd2-203;Chd2-201;Chd2-204;Chd2-207;Chd2-208;Chd2-216;Chd2-214,Chd2;Chd2;Chd2;Chd2;Chd2;Chd2;Chd2,0;0;-3850;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,16,244059,ENSMUSG00000078671,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
13479,cg10250869,0.000041,0.00000526,7.803711973,9.29E-14,gain,yes,0.00000234,0.00000894,0.261662781,0.793755205,pos,ns,0.005389804,0.002617741,2.058952504,0.040333916,pos,ns,1.394329609,-0.0000285,0.00009,-0.316803149,0.75160621,neg,ns,0.06442834,Vwc2l,Vwc2l_fiveUTR,1,70725746,70725795,70725794,70725795,50,-,GGGCTCAGAAGCCAGTTGTTGGCGCTGTCCGTGGTGCTGAGGAATTCCCG,Promoter (<=1kb),1,70725752,70732202,6451,1,Vwc2l-202,0,Spag16-201;Spag16-204;Vwc2l-201;Vwc2l-202;Vwc2l-203;Vwc2l-204,Spag16;Spag16;Vwc2l;Vwc2l;Vwc2l;Vwc2l,898758;774125;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,6,320460,ENSMUSG00000045648,conserved gene and region,1,70725715,70725871,157,*,157,10,0.598726115,0.715914273,0.063694268,0.00000418,CpGisland,TRUE,U15,NS
2377,cg22530914,0.0000303,0.00000628,4.83379508,0.00000211,gain,ns,0.00000279,0.0000107,0.261659349,0.793757849,pos,ns,0.007657463,0.003123189,2.451809281,0.014765399,pos,ns,1.830754816,-0.000173983,0.000107406,-1.619858152,0.106279539,neg,ns,0.113139528,Tfap2b,Tfap2b_Intron,1,19217399,19217448,19217447,19217448,50,+,GCATGCAGTCCTAATTAAATCTTTACGATCCTCCCTGTGACGATTAAGCG,"Intron (Tfap2b-201/Tfap2b, intron 2 of 6)",1,19208914,19238576,29663,1,Tfap2b-201,8485,Tfap2b-201;Tfap2b-204;Tfap2b-202;Tfap2b-205;Tfap2b-203,Tfap2b;Tfap2b;Tfap2b;Tfap2b;Tfap2b,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,40,21419,ENSMUSG00000025927,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
23536,cg19812625,0.0000159,0.0000111,1.430331441,0.153629055,gain,ns,-0.00000494,0.0000189,-0.261555534,0.793837822,neg,ns,-0.00072071,0.005536261,-0.130179866,0.896508555,neg,ns,0.047445562,0.000258353,0.000190392,1.356954322,0.17578294,pos,ns,0.308670608,Sp8,Sp8_Promoter,12,118840657,118840706,118840705,118840706,50,+,AGGTAATTAGAAGCGGTTTACAACGCAAAGGGCTTTTGCATTGCCCCTCG,Promoter (5-6kb),12,118846329,118852576,6248,1,Sp8-201,-5623,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,27,29,320145,ENSMUSG00000048562,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
10614,cg12424436,0.0000907,0.0000143,6.352480099,7.54E-10,gain,yes,-0.00000634,0.0000242,-0.261550775,0.793841488,neg,ns,0.02445162,0.007104386,3.441763786,0.000657273,pos,ns,3.182254172,-0.000795829,0.000244319,-3.257332349,0.001249341,neg,ns,0.333165316,Acin1,Acin1_Exon,14,54678791,54678840,54678839,54678840,50,-,GAAAGTCAGGAGGCAGCAGGGAAGCCACTCCCTCAGGATGGATCATCTCG,"Exon (Acin1-201/Acin1, exon 4 of 19)",14,54642161,54686931,44771,2,Acin1-201,8091,Acin1-201;Acin1-218;Acin1-203;Acin1-206;Acin1-212;Acin1-210,Acin1;Acin1;Acin1;Acin1;Acin1;Acin1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,22,56215,ENSMUSG00000022185,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12515,cg09413334,0.0000195,0.00000643,3.032967085,0.002626267,gain,ns,0.00000286,0.0000109,0.261471438,0.793902606,pos,ns,0.001843905,0.003199724,0.576270086,0.564850789,pos,ns,0.248066261,-0.00011478,0.000110038,-1.043093546,0.297717717,neg,ns,0.7037169,Gm13578,Gm13578_Intergenic_downstream,2,64824139,64824188,64824187,64824188,50,+,GTGACAAGTTAATTCAACTCCTGCTGTTAAATTAACCAGCGTTCCAGCCG,Distal Intergenic,2,64867999,64868588,590,2,Gm13578-201,44400,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,10,667291,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8567,cg26373307,-0.000024,0.00000607,-3.959026657,0.0000934,loss,ns,0.00000269,0.0000103,0.261310579,0.794026529,pos,ns,-0.006317153,0.003020547,-2.09139352,0.037306477,neg,ns,1.428215765,0.000126918,0.000103876,1.221816925,0.22270514,pos,ns,0.917146303,Btrc,Btrc_Intergenic_upstream,19,45338515,45338564,45338515,45338516,50,-,CGCCTGATCCTTACACAAAGTCATATATTTTACATGAGGACGAGCTAAAT,Distal Intergenic,19,45363734,45507736,144003,1,Btrc-204,-25219,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,98,12234,ENSMUSG00000025217,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18640,cg11251728,0.0000405,0.0000113,3.577166571,0.000402849,gain,ns,-0.00000503,0.0000192,-0.261287102,0.794044616,neg,ns,0.01497023,0.005635917,2.656218963,0.008311086,pos,ns,2.08034221,-0.000414629,0.000193819,-2.139262025,0.033195306,neg,ns,0.523918103,Tenm4,Tenm4_Intron,7,96384211,96384260,96384259,96384260,50,-,CAGTTGCCTTTTCATTAAGCATGCCACAGAGGCCCCTTGTTCAGCAGCCG,"Intron (Tenm4-201/Tenm4, intron 2 of 32)",7,96171246,96908569,737324,1,Tenm4-201,212965,Tenm4-201;Tenm4-211;Tenm4-208;Tenm4-204;Tenm4-209;Tenm4-203;Tenm4-202,Tenm4;Tenm4;Tenm4;Tenm4;Tenm4;Tenm4;Tenm4,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,26,23966,ENSMUSG00000048078,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12476,cg01397373,-0.0000619,0.0000116,-5.347427426,0.000000174,loss,yes,-0.00000514,0.0000197,-0.261265745,0.79406107,neg,ns,-0.015887507,0.005760056,-2.758220979,0.00615675,neg,ns,2.210648469,0.000154175,0.000198088,0.778315839,0.436976487,pos,ns,0.858177738,Gm13577,Gm13577_Promoter,2,64475966,64476015,64475966,64475967,50,+,CGTCAAAGGACTTTGCAGTGCGGACAGACCCATAAATCTACCTAGTTTCA,Promoter (1-2kb),2,64474745,64474949,205,2,Gm13577-201,-1017,Gm13577-201,Gm13577,-1017,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,17,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24050,cg04061729,-0.00000317,0.00000332,-0.954075769,0.340788642,loss,ns,0.00000147,0.00000564,0.261213057,0.794101661,pos,ns,0.004547029,0.001652106,2.752262425,0.006267132,pos,ns,2.202931128,-0.000157783,0.0000568,-2.777096284,0.005818601,neg,ns,0.110968374,Bcar3,Bcar3_Exon,3,122292973,122293022,122293021,122293022,50,-,AACCTTTGAATGCCTTCAGCCTCTAGAAGTCCAATGCGCTATCCATTGCG,Promoter (1-2kb),3,122294136,122427148,133013,1,Bcar3-202,-1163,Bcar3-202,Bcar3,-1114,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,8,29815,ENSMUSG00000028121,conserved gene and region,3,122292926,122294040,1115,*,1115,150,0.722869955,1.030721351,0.134529148,3.20E-135,CpGisland,TRUE,U1,Pr-A
20210,cg12879445,0.000158295,0.00000598,26.47676017,1.44E-81,gain,yes,-0.00000265,0.0000102,-0.261185528,0.79412287,neg,ns,0.006493262,0.002975626,2.182149574,0.029848976,pos,ns,1.525070562,-0.0000401,0.000102332,-0.392118782,0.695239892,neg,ns,0.122712185,Unc79,Unc79_fiveUTR,12,102949540,102949589,102949588,102949589,50,-,AACTGGACAGCACCATGTCCACCAAAGCGGAGCAGTGTAAGTAGCAGCCG,Promoter (<=1kb),12,102949554,103183613,234060,1,Unc79-208,0,Unc79-202;Unc79-208,Unc79;Unc79,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,12,24,217843,ENSMUSG00000021198,conserved gene and region,12,102949567,102949769,203,*,203,20,0.738916256,0.848662207,0.098522168,1.99E-15,CpGisland,TRUE,NA,NRS
22592,cg02171965,-0.00000821,0.000007,-1.172133078,0.242043632,loss,ns,-0.00000311,0.0000119,-0.261141033,0.79415715,neg,ns,-0.009838483,0.003485928,-2.822342556,0.005075473,neg,ns,2.294523496,0.000168534,0.000119881,1.405847812,0.160770801,pos,ns,0.847836025,BC052040,BC052040_Intergenic_upstream,2,115310245,115310294,115310293,115310294,50,+,CCATTTTAGAGAAAACATACAAATGGCCCAATAATGGGTTTCTTCATGCG,Distal Intergenic,2,115581716,115778768,197053,1,BC052040-203,-271422,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,9,49,399568,ENSMUSG00000040282,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15569,cg21298607,-0.0000189,0.00000653,-2.889905359,0.004125387,loss,ns,-0.0000029,0.0000111,-0.261106926,0.794183427,neg,ns,0.000869945,0.00325054,0.267631083,0.789161278,pos,ns,0.102834233,-0.000270556,0.000111786,-2.420307492,0.016081952,neg,ns,0.875202411,Cetn3,Cetn3_Intergenic_downstream,13,81828594,81828643,81828594,81828595,50,+,CGCATCACTAGATTCAGCGAGAAATATTGTAACAGTATGTAATCTCTGTC,Distal Intergenic,13,81791977,81793668,1692,1,Cetn3-204,36617,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,9,12626,ENSMUSG00000021537,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10898,cg07010480,0.0000166,0.0000239,0.692873933,0.488907404,gain,ns,0.0000106,0.0000406,0.261099016,0.794189521,pos,ns,-0.032276439,0.011890644,-2.714440049,0.007010524,neg,ns,2.154249518,0.001525566,0.000408918,3.730735785,0.000227016,pos,ns,0.927656129,Tcf7l2,Tcf7l2_Exon,19,55754980,55755029,55755028,55755029,50,-,AAGCAGAACGCTTTGATTTGGTTTCTTTCTACAGCTCCATTTTCAGTCCG,"Exon (Tcf7l2-208/Tcf7l2, exon 4 of 12)",19,55741820,55933229,191410,1,Tcf7l2-213,13160,Tcf7l2-213;Tcf7l2-201;Tcf7l2-208;Tcf7l2-211;Tcf7l2-212;Tcf7l2-206;Tcf7l2-204;Tcf7l2-205;Tcf7l2-222;Tcf7l2-215;Tcf7l2-214;Tcf7l2-207;Tcf7l2-202;Tcf7l2-209;Tcf7l2-210;Tcf7l2-217,Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,88,21416,ENSMUSG00000024985,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3593,cg19150775,-0.00000359,0.00000309,-1.161860231,0.246185997,loss,ns,0.00000137,0.00000525,0.260967774,0.794290638,pos,ns,0.002005473,0.001537867,1.304061545,0.193180052,pos,ns,0.714037722,-0.0000839,0.0000529,-1.585618493,0.113845386,neg,ns,0.930205639,Rps24,Rps24_Intron,14,24635975,24636024,24636023,24636024,50,+,GTTCAAAATAAATATCAGAGACAATTTGCCAACAAAGCCGATTTTCTCCG,"Intron (4930428N03Rik-205/4930428N03Rik-205, intron 2 of 5)",14,24491149,24491989,841,1,Rps24-209,144826,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,12,20088,ENSMUSG00000025290,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2815,cg22435685,-0.0000132,0.00000819,-1.612292326,0.107915897,loss,ns,0.00000363,0.0000139,0.26090856,0.794336261,pos,ns,0.005025207,0.004075388,1.233062294,0.218486732,pos,ns,0.660574931,0.000197702,0.000140152,1.410623713,0.159358259,pos,ns,0.163399746,Sgk1,Sgk1_Exon,10,21882657,21882706,21882705,21882706,50,-,AATGGATTCCCAGTCAAGAAATGCTCAGCCTTCCAATTTTTTAAGAAGCG,Promoter (<=1kb),10,21882184,21999893,117710,1,Sgk1-204,473,Sgk1-204;Sgk1-211,Sgk1;Sgk1,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,20393,ENSMUSG00000019970,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
15076,cg09348974,0.00000255,0.000000456,5.593902192,4.88E-08,gain,yes,-0.000000202,0.000000774,-0.260771703,0.794441708,neg,ns,0.000532966,0.000226741,2.350547427,0.019372194,pos,ns,1.712821197,-0.0000116,0.0000078,-1.482108356,0.139327258,neg,ns,0.010631622,Zfp827,Zfp827_Promoter,8,79028249,79028298,79028297,79028298,50,+,TGCCCTTTGATCCCGACATTAGTGTTAGGGGCTCGGAGACACAGAGCGCG,Promoter (<=1kb),8,79028437,79071837,43401,1,Zfp827-201,-139,Zfp827-201;Zfp827-202;Zfp827-203;Zfp827-209,Zfp827;Zfp827;Zfp827;Zfp827,0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,10,28,622675,ENSMUSG00000071064,conserved gene but different region,8,79028199,79028434,236,*,236,23,0.588983051,1.130833333,0.097457627,1.44E-17,CpGisland,TRUE,U1,Pr-A
1884,cg14988533,0.00000219,0.0000027,0.809170372,0.41903776,gain,ns,0.0000012,0.00000459,0.260635097,0.794546966,pos,ns,0.002066512,0.001346027,1.535268195,0.125737921,pos,ns,0.900533724,0.0000363,0.0000463,0.784783436,0.433179862,pos,ns,0.947238331,Osgin2,Osgin2_Exon,4,15998440,15998489,15998488,15998489,50,+,TACAGCTTTTTGGGAAGCTGTTTGAAAATTAAGCTTGGATCAGTTACTCG,"Exon (Osgin2-201/Osgin2, exon 6 of 6)",4,15997121,16013888,16768,2,Osgin2-201,15399,Osgin2-201;Osgin2-203;Osgin2-205;Osgin2-204,Osgin2;Osgin2;Osgin2;Osgin2,0;0;15307;15332,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,209212,ENSMUSG00000041153,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20876,cg08811838,0.0000249,0.00000367,6.798574337,5.43E-11,gain,yes,0.00000162,0.00000623,0.260441344,0.794696263,pos,ns,0.002682748,0.001824283,1.470576403,0.142419967,pos,ns,0.846429121,-0.0000629,0.0000627,-1.003076119,0.316606451,neg,ns,0.067098845,Pax6,Pax6_fiveUTR,2,105676099,105676148,105676147,105676148,50,+,GAAGTTTCCACGCAGGAGCCCAAACTTTCTACTTCCAGCGAAAGCCCGCG,Promoter (<=1kb),2,105676128,105697071,20944,1,Pax6-201,0,Pax6-206;Pax6-207;Pax6-210;Pax6-214;Pax6-208;Pax6-217;Pax6-226;Pax6-220;Pax6-202;Pax6-205;Pax6-225;Pax6-204;Pax6-201;Pax6-203;Pax6-224;Pax6-219,Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,15,78,18508,ENSMUSG00000027168,conserved gene and region,2,105676054,105676791,738,*,738,77,0.682926829,0.903735746,0.104336043,4.66E-60,CpGisland,TRUE,U3,Pr-B
9247,cg07782006,0.00000199,0.00000176,1.131468799,0.258732345,gain,ns,0.000000778,0.00000299,0.260303699,0.794802331,pos,ns,0.001733013,0.000875708,1.978986241,0.04870219,pos,ns,1.312451513,-0.0000677,0.0000301,-2.248440369,0.025250363,neg,ns,0.96038054,Cadm1,Cadm1_Intron,9,47846788,47846837,47846788,47846789,50,+,CGGCTCAAAAGAGCACCATTACCTTTAGCTGTCACGGATCTGTACACTTG,"Intron (Cadm1-204/Cadm1, intron 8 of 9)",9,47530173,47853385,323213,1,Cadm1-204,316615,Cadm1-204;Cadm1-209;Cadm1-206;Cadm1-202;Cadm1-203;Cadm1-201,Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,77,54725,ENSMUSG00000032076,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17353,cg01399875,0.00000258,0.00000306,0.845857966,0.398284405,gain,ns,0.00000135,0.00000519,0.260216584,0.794869463,pos,ns,0.000520859,0.001520555,0.342545628,0.732172452,pos,ns,0.135386616,-0.0000805,0.0000523,-1.538577138,0.124927623,neg,ns,0.905304776,Agap1,Agap1_Exon,1,89823850,89823899,89823898,89823899,50,+,GATGCAGCCAAACGCAAAGCATGGAAACTAAACCGTGTTGGTAGCCTGCG,"Exon (Agap1-205/Agap1, exon 2 of 3)",1,89454806,89897617,442812,1,Agap1-201,369044,Agap1-201;Agap1-204;Agap1-202;Agap1-205,Agap1;Agap1;Agap1;Agap1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,29,347722,ENSMUSG00000055013,conserved gene and region,1,89823847,89824048,202,*,202,14,0.613861386,0.788182832,0.069306931,7.84E-09,CpGisland,TRUE,U11,Tr-P
11511,cg26465231,-0.0000187,0.00000325,-5.734092513,2.33E-08,loss,yes,-0.00000144,0.00000553,-0.260123307,0.794941345,neg,ns,-0.001080476,0.001619922,-0.666992725,0.505272927,neg,ns,0.296473971,-0.0000452,0.0000557,-0.810586578,0.418224967,neg,ns,0.925583019,Nptn,Nptn_threeUTR,9,58651250,58651299,58651298,58651299,50,+,CTCCAAAGGAAAACCAACTCTACCAACAATCACAAAGATAAAAACTTGCG,3' UTR,9,58582240,58651318,69079,1,Nptn-212,69010,Nptn-212;Nptn-201;Nptn-206;Nptn-202;Nptn-211;Nptn-207;Nptn-208;Nptn-205;Nptn-210;Nptn-209;Rec114-202;Rec114-201;Rec114-205;Rec114-203,Nptn;Nptn;Nptn;Nptn;Nptn;Nptn;Nptn;Nptn;Nptn;Nptn;Rec114;Rec114;Rec114;Rec114,0;0;0;0;0;0;0;0;0;-677;7993;90260;12970;9068,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,22,20320,ENSMUSG00000032336,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
821,cg16778410,-0.0000237,0.00000658,-3.609134166,0.000358086,loss,ns,-0.00000291,0.0000112,-0.260031986,0.795011721,neg,ns,-0.002825373,0.003275041,-0.862698382,0.388970222,neg,ns,0.410083645,0.000143504,0.000112628,1.274138681,0.203568624,pos,ns,0.930407673,1810013L24Rik,1810013L24Rik_Exon,16,8843181,8843230,8843181,8843182,50,-,CGGAAACTAGCTCATCTGTAGAGACTGATTTGCAACCCTTCCGGGAAGCC,"Exon (1810013L24Rik-201/1810013L24Rik, exon 3 of 4)",16,8830100,8858922,28823,1,1810013L24Rik-201,13081,1810013L24Rik-201;1810013L24Rik-202,1810013L24Rik;1810013L24Rik,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,18,19,69053,ENSMUSG00000022507,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13769,cg05894516,-0.00000784,0.00000508,-1.542190472,0.124047464,loss,ns,-0.00000224,0.00000863,-0.259904306,0.79511012,neg,ns,0.001585162,0.002529494,0.626671512,0.53133579,pos,ns,0.27463093,-0.000121222,0.000087,-1.393526843,0.164458789,neg,ns,0.576535096,Cdca7,Cdca7_Exon,2,72478973,72479022,72478973,72478974,50,+,CGTCATCCTCTGATGACAGTTGTGACAGCTTTGCTTCTGATAATTTTGCA,"Exon (Cdca7-201/Cdca7, exon 2 of 9)",2,72476159,72486893,10735,1,Cdca7-201,2814,Cdca7-201;Cdca7-205;Cdca7-202;Cdca7-203,Cdca7;Cdca7;Cdca7;Cdca7,0;0;0;-4542,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,66953,ENSMUSG00000055612,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3647,cg21189065,-0.0000035,0.00000219,-1.597174869,0.111245539,loss,ns,0.000000967,0.00000372,0.259862103,0.795142646,pos,ns,-0.001236747,0.001090262,-1.134357208,0.257521133,neg,ns,0.589187125,0.0000313,0.0000375,0.834134514,0.404847479,pos,ns,0.062615648,Erfl,Erfl_Promoter,7,24944900,24944949,24944900,24944901,50,-,CGCGATCGATGGAATATAATTTTCCTCAAACTCGGAAAATAAAGTTCAGA,Promoter (<=1kb),7,24927445,24944494,17050,2,Erfl-201,-455,Erfl-201,Erfl,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,29,36,,NA,mapped to different genes,7,24944790,24944933,144,*,144,26,0.736111111,1.340494092,0.180555556,8.27E-28,CpGisland,TRUE,U3,Pr-B
899,cg26495376,0.0000608,0.0000084,7.238521364,3.59E-12,gain,yes,-0.00000371,0.0000143,-0.259852899,0.795149739,neg,ns,0.009417616,0.004181471,2.252225666,0.025007465,pos,ns,1.601930335,-0.000452162,0.0001438,-3.14436891,0.001825695,neg,ns,0.13288589,Osr1,Osr1_threeUTR,12,9581007,9581056,9581055,9581056,50,+,CAGCGGCGCCTCTCCCAGAAGTATTACTTTTTCTATTGTTATTTTATACG,3' UTR,12,9574441,9581500,7060,1,Osr1-201,6566,Osr1-202;Osr1-201,Osr1;Osr1,10891;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,3,23967,ENSMUSG00000048387,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
14864,cg00599230,0.0000025,0.00000085,2.945976001,0.003463304,gain,ns,0.000000375,0.00000144,0.259689061,0.795276011,pos,ns,0.0000433,0.000423071,0.102362487,0.918535139,pos,ns,0.036904225,0.00000441,0.0000145,0.303047487,0.762056934,pos,ns,0.979496107,Phf12,Phf12_threeUTR,11,78024926,78024975,78024926,78024927,50,+,CGACGTAAGTAACAGTCTTCCTGCTCCGTCCCCAGATGGCAAGGTCAGCC,3' UTR,11,77982754,78026214,43461,1,Phf12-202,42172,Phf12-202;Phf12-201;Phf12-207;Phf12-206;Phf12-208;Phf12-205;Phf12-203;Phf12-204,Phf12;Phf12;Phf12;Phf12;Phf12;Phf12;Phf12;Phf12,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,11,27,268448,ENSMUSG00000037791,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2386,cg08693303,0.0000325,0.0000042,7.734256798,1.47E-13,gain,yes,-0.00000185,0.00000714,-0.259651809,0.795304722,neg,ns,0.004193542,0.002091914,2.004643827,0.045870465,pos,ns,1.338466856,-0.000123273,0.0000719,-1.713528726,0.087615009,neg,ns,0.052956527,Tfap2b,Tfap2b_Intron,1,19231847,19231896,19231847,19231848,50,+,CGGTTTGTCCCGTTGACAGCGTAATTTAAAGAAATATATGGAAGGCTGAA,"Intron (Tfap2b-201/Tfap2b, intron 6 of 6)",1,19208914,19238576,29663,1,Tfap2b-201,22933,Tfap2b-201;Tfap2b-204;Tfap2b-202,Tfap2b;Tfap2b;Tfap2b,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,40,21419,ENSMUSG00000025927,conserved gene and region,1,19231763,19231867,105,*,105,11,0.561904762,1.336805556,0.104761905,6.39E-09,CpGisland,TRUE,NA,NRS
1636,cg22250678,-0.000034,0.00000513,-6.618480768,1.60E-10,loss,yes,-0.00000226,0.00000872,-0.259603006,0.795342337,neg,ns,-0.00649639,0.002554311,-2.543304534,0.011466559,neg,ns,1.940566875,0.00015725,0.0000878,1.79013579,0.074407895,pos,ns,0.921122961,Zfp521,Zfp521_Intron,18,13943737,13943786,13943785,13943786,50,+,ATCGCAAAACAACTGCCTCATTAAATCTCTGCAGTAAGATTAATATGCCG,"Intron (Zfp521-201/Zfp521, intron 2 of 7)",18,13687013,13972787,285775,2,Zfp521-201,29001,Zfp521-201;Zfp521-204;Zfp521-203;Zfp521-202,Zfp521;Zfp521;Zfp521;Zfp521,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,81,225207,ENSMUSG00000024420,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25014,cg27487607,0.0000353,0.00000413,8.529180539,6.61E-16,gain,yes,-0.00000182,0.00000702,-0.259583863,0.795357091,neg,ns,0.003819074,0.002057357,1.85630104,0.064359329,pos,ns,1.191388492,0.00000584,0.0000708,0.082557564,0.934256625,pos,ns,0.115291679,Fgfr2,Fgfr2_Intron,7,131542586,131542635,131542634,131542635,50,+,CCCCGCATTTAACTTGGATGACATTTTGATTTCATCATTAGCATCCGGCG,"Intron (Fgfr2-217/Fgfr2, intron 2 of 6)",7,130162451,133123350,2960900,2,Fgfr2-217,1580715,Fgfr2-217;Hmx3-201,Fgfr2;Hmx3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,58,79,14183,ENSMUSG00000030849,mapped to different genes,7,131542631,131543412,782,*,782,92,0.739130435,0.916717635,0.117647059,5.66E-77,CpGisland,TRUE,U3,Pr-B
9919,cg23108415,-0.00000773,0.0000027,-2.85799969,0.004551773,loss,ns,0.00000119,0.00000459,0.259558268,0.795376818,pos,ns,-0.001435996,0.001345299,-1.067417357,0.286613959,neg,ns,0.542702663,0.0000761,0.0000463,1.643952715,0.101199694,pos,ns,0.929215015,Gm46574,Gm46574_Intergenic_upstream,17,51584667,51584716,51584715,51584716,50,-,GTTGTGCATTCAGCTTTTTAATGTGTTCAAAGAGCAGCTCTGACGCATCG,Distal Intergenic,17,51484292,51484721,430,2,Gm46574-201,-99995,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,19,108168316,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1494,cg23544141,-0.00000718,0.00000813,-0.882629518,0.378120381,loss,ns,0.00000358,0.0000138,0.259487683,0.795431222,pos,ns,-0.001485546,0.004046864,-0.367085695,0.713805552,neg,ns,0.146420078,-0.00010294,0.000139171,-0.739664359,0.460063428,neg,ns,0.846647544,Gm11819,Gm11819_Intergenic_upstream,4,13248713,13248762,13248713,13248714,50,-,CGTACCTTGATGAAACTGCATTGTCATGGAATGGTAATATTTGTGGATCA,Distal Intergenic,4,13444770,13445141,372,1,Gm11819-201,-196057,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,19,22,,NA,mapped to different genes,4,13248547,13248714,168,*,168,12,0.535714286,0.997525977,0.071428571,8.86E-08,CpGisland,TRUE,U15,NS
19359,cg27236202,0.000107021,0.0000153,7.015375928,1.45E-11,gain,yes,0.00000672,0.0000259,0.259200411,0.79565265,pos,ns,0.015082588,0.007592698,1.986459623,0.047862548,pos,ns,1.320004181,-0.000130461,0.000261112,-0.499636742,0.617685313,neg,ns,0.056244333,Dnajc22,Dnajc22_Intron,15,99096657,99096706,99096705,99096706,50,-,AAAGGCAAATTTGACATTTTTAAATCCCGAGCCTTAGAGGGATCGATGCG,"Intron (Dnajc22-202/Dnajc22, intron 1 of 2)",15,99093170,99100917,7748,1,Dnajc22-202,3487,Dnajc22-202;Dnajc22-201,Dnajc22;Dnajc22,0;-2706,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,8,72778,ENSMUSG00000038009,conserved gene but different region,15,99096546,99097272,727,*,727,67,0.676753783,0.806226827,0.09215956,1.82E-48,CpGisland,TRUE,U3,Pr-B
27075,cg08926507,-0.0000105,0.00000464,-2.26780793,0.024028855,loss,ns,0.00000204,0.00000788,0.259111163,0.795721445,pos,ns,0.004437827,0.002309677,1.921406123,0.055597234,pos,ns,1.254946812,-0.000213825,0.0000794,-2.692008807,0.007488126,neg,ns,0.843662637,Gm38213,Gm38213_Intergenic_upstream,1,157799306,157799355,157799354,157799355,50,+,CAGCCCTTGCTGCTGATTGCTGTAAAATGCAAAGTAATTAACAGCGAGCG,Distal Intergenic,1,157621964,157622136,173,2,Gm38213-201,-177170,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8165,cg13004392,0.0000919,0.0000126,7.315096649,2.21E-12,gain,yes,-0.00000553,0.0000214,-0.259076241,0.795748365,neg,ns,0.025898461,0.006255911,4.139838626,0.0000448,pos,ns,4.348303561,-0.000564301,0.00021514,-2.622944999,0.009148201,neg,ns,0.330428292,Pax2,Pax2_Intron,19,44813599,44813648,44813647,44813648,50,+,AGATCAGGCAATCAATAGGGGCAGCAGATATCATATATCACCTCTCTGCG,"Intron (Pax2-203/Pax2, intron 5 of 9)",19,44756045,44837851,81807,1,Pax2-203,57554,Pax2-203;Pax2-201;Pax2-202,Pax2;Pax2;Pax2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,35,166,18504,ENSMUSG00000004231,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8908,cg06039154,0.00000742,0.00000168,4.411526701,0.0000142,gain,ns,0.00000074,0.00000286,0.259013765,0.795796525,pos,ns,0.002126855,0.000837071,2.540830413,0.011546309,pos,ns,1.937556829,-0.0000254,0.0000288,-0.883293718,0.377762067,neg,ns,0.014250553,Helt,Helt_Promoter,8,46294775,46294824,46294823,46294824,50,+,TGTTTACACCGCTTTATTTGTCCGGACATCCCGGCAGGTGTGGGGCTGCG,Promoter (<=1kb),8,46292039,46294671,2633,2,Helt-201,-104,Helt-201;Helt-202;Helt-203,Helt;Helt;Helt,0;-786;-1440,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,15,22,234219,ENSMUSG00000047171,conserved gene and region,8,46294678,46294897,220,*,220,21,0.65,0.923630548,0.095454546,6.99E-16,CpGisland,TRUE,U13,Hc-P
846,cg03506106,-0.0000067,0.00000598,-1.119941738,0.263605525,loss,ns,0.00000263,0.0000102,0.258985946,0.795817969,pos,ns,-0.008089584,0.002977086,-2.717282189,0.006952014,neg,ns,2.157889366,0.000138514,0.000102382,1.352921251,0.177066654,pos,ns,0.880288135,Wdr35,Wdr35_Exon,12,9004071,9004120,9004071,9004072,50,+,CGTGTGGCAAAGAAGCTCACAGCATTGGAAATTAATCAGATCACACGGTC,"Exon (Wdr35-201/Wdr35, exon 13 of 28)",12,8973892,9028847,54956,1,Wdr35-201,30179,Wdr35-201;Wdr35-202;Wdr35-207,Wdr35;Wdr35;Wdr35,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,74682,ENSMUSG00000066643,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9889,cg27122718,0.0000155,0.00000448,3.469896863,0.000594451,gain,ns,0.00000197,0.00000761,0.258965959,0.795833377,pos,ns,0.00389254,0.002230405,1.745216317,0.08193807,pos,ns,1.086514267,-0.0000718,0.0000767,-0.935545283,0.350235557,neg,ns,0.895664674,Gm46574,Gm46574_Intergenic_downstream,17,51371199,51371248,51371199,51371200,50,-,CGGAAATGTTTCTTGTCATTAGCATTTAAAAAAAGCTATGAGATTCAGGC,Distal Intergenic,17,51484292,51484721,430,2,Gm46574-201,113522,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,19,108168316,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12648,cg26269403,0.0000385,0.00000886,4.348937131,0.0000186,gain,ns,-0.00000389,0.000015,-0.258874652,0.795903763,neg,ns,0.010363093,0.004407771,2.351096255,0.019344157,pos,ns,1.71345019,-0.000318065,0.000151583,-2.098291718,0.036688409,neg,ns,0.102003219,Astn2,Astn2_Intron,4,66402902,66402951,66402902,66402903,50,+,CGGGAGAGCTAAGGGGAACAACATTTTTGTAAACGCTCTCCGAGATAATT,"Intron (Astn2-202/Astn2, intron 1 of 21)",4,65380803,66404483,1023681,2,Astn2-202,1532,Astn2-202;Astn2-201,Astn2;Astn2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,7,56079,ENSMUSG00000028373,conserved gene and region,4,66402789,66403061,273,*,273,25,0.619047619,0.956150182,0.091575092,2.33E-18,CpGisland,TRUE,U3,Pr-B
20693,cg11218854,0.0000564,0.00000775,7.277071106,2.82E-12,gain,yes,0.00000341,0.0000132,0.258858071,0.795916546,pos,ns,0.005929437,0.00385723,1.537226505,0.125257872,pos,ns,0.90219497,0.0000161,0.00013265,0.121686575,0.903226087,pos,ns,0.148475897,Pou4f1,Pou4f1_Promoter,14,104473598,104473647,104473598,104473599,50,-,CGCGTTTAAATAAATGAAGTGTTAATTCATTAGGATTAATTAATTTGTTA,Promoter (5-6kb),14,104461676,104467999,6324,2,Pou4f1-201,-5648,Rnf219-201,Rnf219,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,6,31,18996,ENSMUSG00000048349,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
18955,cg08159677,-0.0000262,0.00000536,-4.898837544,0.00000156,loss,yes,0.00000236,0.0000091,0.258856075,0.795918085,pos,ns,0.002353921,0.002665458,0.883120557,0.377855462,pos,ns,0.422674296,-0.000297312,0.0000917,-3.243463569,0.001309657,neg,ns,0.912182454,Dach1,Dach1_Intron,14,98019531,98019580,98019531,98019532,50,+,CGATGATATGTTTTATTACTTCGCACTGCTAGCCTGATATCTAGATGATA,"Intron (Dach1-201/Dach1, intron 1 of 10)",14,97786853,98169543,382691,2,Dach1-201,149963,Dach1-201;Dach1-202;Dach1-203,Dach1;Dach1;Dach1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,76,13134,ENSMUSG00000055639,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26029,cg00244134,-0.00000372,0.00000393,-0.945229178,0.34527803,loss,ns,-0.00000173,0.00000668,-0.258740798,0.796006952,neg,ns,-0.00000888,0.001956661,-0.00453775,0.99638233,neg,ns,0.001573983,-0.000149775,0.0000673,-2.225828805,0.026744485,neg,ns,0.949935826,Gm2574,Gm2574_Intron,3,143254756,143254805,143254756,143254757,50,-,CGATTGAAATGCCAAATCCTTGACGGAGTAATGAGTTATGGCCAATACCA,"Intron (A830019L24Rik-201/A830019L24Rik-201, intron 2 of 3)",3,142962611,142963612,1002,1,Gm2574-201,292194,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,19,100040053,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5426,cg09012513,-0.0000013,0.00000207,-0.627243845,0.530961109,loss,ns,-0.000000909,0.00000351,-0.258723516,0.796020275,neg,ns,0.001179113,0.001029688,1.145116665,0.253044126,pos,ns,0.59680374,-0.000028,0.0000354,-0.79101702,0.42953882,neg,ns,0.085957096,Rbpms,Rbpms_Exon,8,33929481,33929530,33929529,33929530,50,-,CCTCCTGAAGGTTGGCCTCGCTCGGGGTGTTCTCCTTCTCGGCTTTGCCG,Promoter (<=1kb),8,33782643,33929863,147221,2,Rbpms-203,333,Rbpms-203;Rbpms-213;Rbpms-201;Rbpms-208;Rbpms-202;Rbpms-214;Rbpms-215,Rbpms;Rbpms;Rbpms;Rbpms;Rbpms;Rbpms;Rbpms,0;0;0;0;0;0;-89,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,5,19663,ENSMUSG00000031586,mapped to different genes,8,33929499,33929841,343,*,343,57,0.781341108,1.111167945,0.166180758,4.37E-58,CpGisland,TRUE,U1,Pr-A
2635,cg17541333,-0.00000108,0.000000923,-1.164892669,0.244958053,loss,ns,0.000000406,0.00000157,0.258699999,0.796038405,pos,ns,0.000937187,0.000459404,2.040006511,0.042196995,pos,ns,1.374718475,-0.0000398,0.0000158,-2.518534177,0.012287604,neg,ns,0.970183348,Camk2g,Camk2g_Exon,14,20755667,20755716,20755667,20755668,50,+,CGCCATCCGACTTCTTGTTCAATAGGCTTTTGGCAGCTGTGAAAACAAAG,"Exon (Camk2g-203/Camk2g, exon 13 of 19)",14,20734875,20794051,59177,2,Camk2g-203,38335,Camk2g-203;Camk2g-201;Camk2g-202;Camk2g-217;Camk2g-209;Camk2g-204;Camk2g-212;Camk2g-211;Camk2g-214;Camk2g-216;Camk2g-206,Camk2g;Camk2g;Camk2g;Camk2g;Camk2g;Camk2g;Camk2g;Camk2g;Camk2g;Camk2g;Camk2g,0;0;0;0;0;0;0;0;0;0;9793,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,15,12325,ENSMUSG00000021820,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17440,cg02620634,0.0000112,0.00000923,1.213872937,0.225720224,gain,ns,-0.00000405,0.0000157,-0.258580985,0.796130157,neg,ns,0.017007572,0.004592711,3.703166523,0.000251996,pos,ns,3.598606794,-0.00037122,0.000157943,-2.350339832,0.019382808,neg,ns,0.898655505,Ankrd17,Ankrd17_Exon,5,90283105,90283154,90283153,90283154,50,+,GTCTGCTGGGGTTCATCTTTAAGTAAAACAGGATCCACTTGCTGTAACCG,"Exon (Ankrd17-201/Ankrd17, exon 15 of 34)",5,90227166,90366577,139412,2,Ankrd17-201,83423,Ankrd17-201;Ankrd17-203;Ankrd17-202;Ankrd17-205;Ankrd17-212;Ankrd17-214;Ankrd17-211,Ankrd17;Ankrd17;Ankrd17;Ankrd17;Ankrd17;Ankrd17;Ankrd17,0;0;0;0;0;0;-4583,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,12,81702,ENSMUSG00000055204,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27810,cg22007666,0.0000351,0.0000102,3.442875993,0.000654676,gain,ns,0.00000447,0.0000173,0.258464013,0.796220338,pos,ns,0.01636986,0.005071503,3.227812541,0.001380961,pos,ns,2.859818578,-0.000683912,0.000174409,-3.921320759,0.000108457,neg,ns,0.064209085,Esrrg,Esrrg_fiveUTR,1,187997783,187997832,187997783,187997784,50,+,CGGTGGGACTGCATATGTAAAGCCCTACTTCATATTAATAAGCTCCAATC,Promoter (<=1kb),1,187997827,188214885,217059,1,Esrrg-201,0,Esrrg-204;Esrrg-203;Esrrg-201;Esrrg-202,Esrrg;Esrrg;Esrrg;Esrrg,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,60,26381,ENSMUSG00000026610,conserved gene but different region,1,187997630,187997784,155,*,155,16,0.729032258,0.779874214,0.103225807,9.51E-13,CpGisland,TRUE,NA,NRS
4397,cg25363348,-0.00000446,0.00000296,-1.506504082,0.132956119,loss,ns,-0.0000013,0.00000502,-0.258079545,0.796516766,neg,ns,-0.001752204,0.001472059,-1.190308708,0.234835802,neg,ns,0.629235692,0.000115653,0.0000506,2.284555522,0.023014427,pos,ns,0.947649883,Unc5d,Unc5d_Exon,8,28760766,28760815,28760814,28760815,50,+,CCCTCACAAAAGGCCCCACCATTGAGAGGAGCTGGGTTGGTGCAGGTCCG,"Exon (Unc5d-201/Unc5d, exon 6 of 18)",8,28646717,29219636,572920,2,Unc5d-201,458821,Unc5d-201;Unc5d-204;Unc5d-202;Unc5d-203;Unc5d-205,Unc5d;Unc5d;Unc5d;Unc5d;Unc5d,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,11,210801,ENSMUSG00000063626,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
446,cg06415360,0.00000142,0.00000536,0.265442651,0.790844914,gain,ns,0.00000235,0.0000091,0.25798197,0.796592002,pos,ns,0.007205134,0.002667113,2.701473081,0.007283148,pos,ns,2.13768084,-0.000129239,0.0000917,-1.409032538,0.15982782,neg,ns,0.875056008,Rbfox1,Rbfox1_Intron,16,5964407,5964456,5964407,5964408,50,+,CGATTGCCTGGGTAAGTTATAAATCCTAGATATTAGAATTTTTATGCTTT,"Intron (Rbfox1-205/Rbfox1, intron 1 of 11)",16,5885355,7353045,1467691,1,Rbfox1-205,79052,Rbfox1-205,Rbfox1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,35,268859,ENSMUSG00000008658,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21382,cg18492509,-0.000000366,0.00000546,-0.066948197,0.9466661,loss,ns,0.00000239,0.00000928,0.257976883,0.796595925,pos,ns,-0.002747554,0.00271809,-1.010839854,0.312881409,neg,ns,0.504620241,0.000173434,0.0000935,1.855403501,0.064487702,pos,ns,0.885953209,Wwp2,Wwp2_Exon,8,107555474,107555523,107555474,107555475,50,-,CGGCACTACACCAAGAACAGCAAGCAGATCCAGTGGTTCTGGCAGGTGGG,"Exon (Wwp2-201/Wwp2, exon 21 of 24)",8,107436365,107558595,122231,1,Wwp2-201,119109,Wwp2-201;Wwp2-204;Wwp2-205;Wwp2-206;Wwp2-210,Wwp2;Wwp2;Wwp2;Wwp2;Wwp2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,6,66894,ENSMUSG00000031930,conserved gene and region,8,107555361,107555475,115,*,115,9,0.617391304,0.841463415,0.07826087,0.00000296,CpGisland,TRUE,U10,Tr-S
15568,cg17072571,-0.0000132,0.00000348,-3.79757098,0.000175802,loss,ns,-0.00000152,0.00000591,-0.257920332,0.79663953,neg,ns,-0.000615887,0.001731007,-0.355797076,0.722234532,neg,ns,0.14132175,-0.0000789,0.0000595,-1.32476155,0.186225963,neg,ns,0.918961368,Cetn3,Cetn3_Intergenic_downstream,13,81828556,81828605,81828556,81828557,50,+,CGGTCCAATTTGCACAGCAGTTGCAAAGAAAAAGCAAACGCATCACTAGA,Distal Intergenic,13,81791977,81793668,1692,1,Cetn3-204,36579,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,9,12626,ENSMUSG00000021537,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21322,cg16302110,-0.00000272,0.00000211,-1.291854727,0.197369731,loss,ns,-0.000000923,0.00000358,-0.257874908,0.796674555,neg,ns,0.002114303,0.001048872,2.015788081,0.044684641,pos,ns,1.349841723,-0.0000345,0.0000361,-0.957659131,0.338980929,neg,ns,0.960482803,Nfat5,Nfat5_threeUTR,8,107339156,107339205,107339204,107339205,50,+,TTCAGTAACATGAGCACCAGTTCCTACAATGATAACACTGAGGTACCTCG,3' UTR,8,107293470,107372227,78758,1,Nfat5-213,45686,Nfat5-213;Nfat5-214;Nfat5-206;Nfat5-211;Nfat5-203;Nfat5-201;Nfat5-209;Nfat5-205;Nfat5-202;Nfat5-207,Nfat5;Nfat5;Nfat5;Nfat5;Nfat5;Nfat5;Nfat5;Nfat5;Nfat5;Nfat5,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,13,17,54446,ENSMUSG00000003847,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13811,cg14894237,-0.0000412,0.00000732,-5.628380116,4.07E-08,loss,yes,0.00000321,0.0000124,0.257834642,0.796705604,pos,ns,0.024719562,0.003643555,6.784462744,5.92E-11,pos,yes,10.22794071,-0.000706961,0.000125302,-5.642078557,3.79E-08,neg,yes,0.873734433,Sp3,Sp3_Exon,2,72970621,72970670,72970669,72970670,50,-,TGCTGTAGAAACCTGAATATTCTGTGCCTGTGTCTCTTCAGAAACAGGCG,"Exon (Sp3-202/Sp3, exon 4 of 7)",2,72936427,72980446,44020,2,Sp3-202,9776,Gm11084-201;Sp3-202;Sp3-201;Sp3-204;Sp3-205,Gm11084;Sp3;Sp3;Sp3;Sp3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,6,20687,ENSMUSG00000027109,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2603,cg02661453,0.000006,0.00000694,0.864053453,0.388226588,gain,ns,0.00000304,0.0000118,0.257806315,0.796727447,pos,ns,-0.003898252,0.003454233,-1.12854354,0.259963046,neg,ns,0.585088382,0.0000244,0.000118791,0.205118413,0.837614229,pos,ns,0.723645226,Cdk16,Cdk16_fiveUTR,X,20693326,20693375,20693326,20693327,50,+,CGCCATGGATCGGATGAAGAAGATCAAACGGCAGCTGTCAATGACACTCC,5' UTR,20,20687954,20699880,11927,1,Cdk16-202,5372,Cdk16-202;Cdk16-206;Cdk16-201;Cdk16-207;Cdk16-203;Cdk16-204;Cdk16-208;Cdk16-205,Cdk16;Cdk16;Cdk16;Cdk16;Cdk16;Cdk16;Cdk16;Cdk16,0;0;0;0;0;0;-3030;-3070,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,6,18555,ENSMUSG00000031065,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22632,cg01904387,-0.00000539,0.00000192,-2.810490046,0.005261315,loss,ns,0.000000839,0.00000326,0.257663649,0.79683746,pos,ns,0.00010033,0.000953856,0.105183881,0.916297925,pos,ns,0.037963297,-0.0000214,0.0000328,-0.653498805,0.513919174,neg,ns,0.961235851,Sox6,Sox6_Exon,7,115486653,115486702,115486653,115486654,50,-,CGGGGTTTGTATTTATAGTTTGGGTACTTCTCTAAGTGGATCTTGCTTAG,"Exon (Sox6-210/Sox6, exon 15 of 16)",7,115470872,116031047,560176,2,Sox6-210,544345,Sox6-210;Sox6-201;Sox6-202;Sox6-204;Sox6-205;Sox6-203;Sox6-212;Sox6-206,Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,57,20679,ENSMUSG00000051910,conserved gene and region,7,115486566,115486654,89,*,89,9,0.606741573,1.155844156,0.101123596,0.000000335,CpGisland,TRUE,NA,NRS
4021,cg01589831,0.0000211,0.00000443,4.769436968,0.00000285,gain,ns,0.00000194,0.00000753,0.25763878,0.796856637,pos,ns,-0.0000754,0.002204985,-0.034191697,0.972746293,neg,ns,0.012000416,0.000045,0.0000758,0.593047491,0.553581764,pos,ns,0.79375863,Gm50479,Gm50479_Intergenic_downstream,8,26504576,26504625,26504576,26504577,50,+,CGGATGACCAATAGCCAACAGCCGGTGGATACGCACTGACATTGATGATA,Distal Intergenic,8,26237222,26237407,186,1,Gm50479-201,267354,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,21,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8949,cg04918691,0.0000769,0.00000573,13.4080944,1.21E-32,gain,yes,0.00000251,0.00000974,0.257606401,0.796881606,pos,ns,0.011301309,0.002854221,3.959506859,0.0000932,pos,ns,4.030560944,-0.000314132,0.0000982,-3.200318741,0.001514995,neg,ns,0.102844565,Bmp4,Bmp4_Exon,14,46386023,46386072,46386071,46386072,50,+,CTCGCGCCTCCTAGCAGGACTTGGCATAATAAAACGACCATCAGCATTCG,"Exon (Bmp4-201/Bmp4, exon 3 of 4)",14,46383520,46390669,7150,2,Bmp4-201,4597,Bmp4-201;Bmp4-202;Bmp4-204;Bmp4-203;Gm15217-202;Gm15217-201;Gm15217-203,Bmp4;Bmp4;Bmp4;Bmp4;Gm15217;Gm15217;Gm15217,0;0;0;4463;6609;6556;4896,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,8,12159,ENSMUSG00000021835,conserved gene and region,14,46385825,46386072,248,*,248,22,0.580645161,1.05982906,0.088709677,6.67E-16,CpGisland,TRUE,U3,Pr-B
11209,cg00399624,-0.0000173,0.00000478,-3.609630873,0.000357428,loss,ns,0.00000209,0.00000812,0.257462079,0.7969929,pos,ns,-0.002085665,0.002379946,-0.87634983,0.381518448,neg,ns,0.418484458,0.00000402,0.0000818,0.049081491,0.960885961,pos,ns,0.872727485,Khsrp,Khsrp_threeUTR,17,57022159,57022208,57022207,57022208,50,+,TCATGGTGTCCCCACAACACCCCTGTGAGGTAGGTTGGAAGGTGGCAACG,3' UTR,17,57021051,57031488,10438,2,Khsrp-201,9280,Gm17949-201;Khsrp-201;Khsrp-205;Khsrp-202;Khsrp-204;Khsrp-203,Gm17949;Khsrp;Khsrp;Khsrp;Khsrp;Khsrp,10690;0;0;2654;1852;1963,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,1,16549,ENSMUSG00000007670,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13428,cg09207276,-0.00000491,0.00000146,-3.363191986,0.000867131,loss,ns,-0.000000638,0.00000248,-0.257331186,0.797093843,neg,ns,-0.000165805,0.000725983,-0.228386288,0.819496526,neg,ns,0.086452883,-0.0000011,0.000025,-0.044204611,0.964769766,neg,ns,0.043292729,Sp5,Sp5_fiveUTR,2,70475005,70475054,70475005,70475006,50,+,CGCTATTCTTTGATGATTGGGTAGCGGCAAACTTCAAAGCCATAAATCTT,Promoter (<=1kb),2,70474923,70477729,2807,1,Sp5-201,82,Sp5-201,Sp5,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,7,11,64406,ENSMUSG00000075304,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
8312,cg23885558,-0.00000451,0.00000306,-1.472020506,0.142029802,loss,ns,0.00000134,0.0000052,0.257278738,0.797134292,pos,ns,0.00505613,0.0015247,3.316146155,0.001021103,pos,ns,2.990930658,-0.000185065,0.0000524,-3.529459424,0.000479515,neg,ns,0.921841731,Zeb2,Zeb2_Intron,2,45001359,45001408,45001407,45001408,50,+,AAAGTGCAAATAAAATTTCTAAATTAGAAATTAACACACTCATTCGATCG,"Intron (Zeb2-212/Zeb2, intron 7 of 10)",2,44983632,45117395,133764,2,Zeb2-212,115987,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-227;Zeb2-216;Zeb2-229;Zeb2-218;Zeb2-222,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19144,cg13846137,0.00000267,0.00000148,1.807671625,0.071626801,gain,ns,0.000000646,0.00000251,0.257043022,0.797316083,pos,ns,0.001176911,0.000735724,1.599663596,0.110691858,pos,ns,0.955884324,-0.0000214,0.0000253,-0.846318214,0.398028068,neg,ns,0.96055726,Emsy,Emsy_Exon,7,98646477,98646526,98646477,98646478,50,+,CGTTTACTGCTCTCCGAACTTCAGCACGGTGGCGTTCTGTTGAGATGCTA,"Exon (Emsy-202/Emsy, exon 4 of 20)",7,98587137,98656779,69643,2,Emsy-202,10253,Emsy-202;Emsy-207;Emsy-201;Emsy-211;Emsy-210;Emsy-208;Emsy-209,Emsy;Emsy;Emsy;Emsy;Emsy;Emsy;Emsy,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,13,16,233545,ENSMUSG00000035401,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4920,cg13070234,0.00000419,0.00000518,0.809873072,0.418634348,gain,ns,-0.00000226,0.00000879,-0.256866395,0.797452311,neg,ns,0.002327812,0.002576593,0.903445796,0.366990837,pos,ns,0.435344779,-0.000137675,0.0000886,-1.553736791,0.1212675,neg,ns,0.898568148,Hddc2,Hddc2_Exon,10,31316335,31316384,31316335,31316336,50,+,CGTTGGGGACATAGCACCAGCAGATAACATCCCCAAAGAAGAAAAACATA,"Exon (Hddc2-201/Hddc2, exon 3 of 6)",10,31313383,31328204,14822,1,Hddc2-201,2952,Hddc2-201;Hddc2-205;Hddc2-204;Hddc2-202;Hddc2-203,Hddc2;Hddc2;Hddc2;Hddc2;Hddc2,0;0;0;0;-3783,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,69692,ENSMUSG00000000295,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2437,cg19872412,0.0000291,0.0000156,1.857296713,0.064217169,gain,ns,-0.00000682,0.0000266,-0.256719297,0.797565768,neg,ns,-0.007161746,0.007788021,-0.919584921,0.358504698,neg,ns,0.445505149,0.00052869,0.000267829,1.973982431,0.049271291,pos,ns,0.204502048,Ptf1a,Ptf1a_Intergenic_downstream,2,19451520,19451569,19451520,19451521,50,+,CGTCAGGCGTTACATAAAGTGACTCTGTTACCATAAGGCTCTCACCATCC,Distal Intergenic,2,19445663,19447501,1839,1,Ptf1a-201,5857,Ptf1a-201,Ptf1a,5857,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,14,21,19213,ENSMUSG00000026735,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
20571,cg16854780,0.0000105,0.00000319,3.305544961,0.001059142,gain,ns,0.00000139,0.00000542,0.256637456,0.797628894,pos,ns,0.000269809,0.001587035,0.170008225,0.865114562,pos,ns,0.062926378,0.000131061,0.0000546,2.401358219,0.016922921,pos,ns,0.915197594,Slc16a2,Slc16a2_Exon,X,103712222,103712271,103712222,103712223,50,+,CGGCAGCCCAAACGGTCAGTGAATATACTCACAATGGGAGAACAGAAGAA,"Exon (Slc16a2-201/Slc16a2, exon 2 of 6)",20,103697414,103821983,124570,2,Slc16a2-201,109712,Slc16a2-201;Slc16a2-202,Slc16a2;Slc16a2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,20502,ENSMUSG00000033965,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8565,cg14758812,-0.000025,0.0000054,-4.634998702,0.00000527,loss,ns,-0.00000235,0.00000917,-0.256597007,0.797660094,neg,ns,-0.010902244,0.002686537,-4.058103452,0.0000627,neg,ns,4.202877368,0.000270617,0.0000924,2.929082633,0.003651759,pos,ns,0.825681473,Btrc,Btrc_Exon,19,45338383,45338432,45338431,45338432,50,-,CATAGCTCCGTTCCCACACACTGCCTGATGTACAATCACATTTTGCAGCG,"Exon (Gm28578-209/Gm28578-209, exon 1 of 7)",19,45363734,45507736,144003,1,Btrc-204,-25351,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,30,98,12234,ENSMUSG00000025217,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20690,cg04317201,0.0000513,0.00000523,9.816148114,5.55E-20,gain,yes,-0.00000228,0.00000888,-0.256509943,0.797727251,neg,ns,0.009364213,0.002602619,3.597995744,0.000373123,pos,ns,3.428147629,-0.0000829,0.0000895,-0.925723889,0.355309576,neg,ns,0.085533131,Pou4f1,Pou4f1_Promoter,14,104473445,104473494,104473445,104473446,50,-,CGCCCGCACAAATCAAAGCCCCTTGCGAGGGACTGGGAAATAGTTGCCTT,Promoter (5-6kb),14,104461676,104467999,6324,2,Pou4f1-201,-5495,Rnf219-201,Rnf219,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,6,31,18996,ENSMUSG00000048349,mapped to different genes,14,104472961,104473471,511,*,511,41,0.632093934,0.808918919,0.080234834,2.30E-27,CpGisland,TRUE,U3,Pr-B
6766,cg20480930,0.0000068,0.00000123,5.510933497,7.52E-08,gain,yes,0.000000538,0.0000021,0.256472248,0.797756327,pos,ns,0.000390902,0.00061458,0.636046706,0.525215279,pos,ns,0.279662648,0.0000212,0.0000211,1.003998863,0.316162193,pos,ns,0.019625332,Lhx2,Lhx2_Intron,2,38357398,38357447,38357398,38357399,50,-,CGAGTAAATTATTCATGATTTTACGAGCTCTTTAGCTCCATTGAATCGGC,"Intron (Lhx2-203/Lhx2, intron 3 of 4)",2,38339281,38369199,29919,1,Lhx2-203,18117,Lhx2-203;Lhx2-204;Lhx2-202;Lhx2-201;Lhx2-207;Lhx2-205;Lhx2-206,Lhx2;Lhx2;Lhx2;Lhx2;Lhx2;Lhx2;Lhx2,0;0;0;0;5630;4866;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,33,16870,ENSMUSG00000000247,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
24935,cg23844552,-0.0000237,0.00000795,-2.981777393,0.003092984,loss,ns,0.00000346,0.0000135,0.256455145,0.79776952,pos,ns,-0.012633026,0.003954403,-3.194673551,0.001543964,neg,ns,2.811362748,0.000185112,0.000135992,1.361202683,0.174438256,pos,ns,0.74456693,Adgrb2,Adgrb2_Intron,4,129995359,129995408,129995359,129995360,50,+,CGCCTGTTAATTTCACGCAAACTGCCTTTGATAGATCTCTTGTTATTTTT,"Intron (Adgrb2-207/Adgrb2, intron 2 of 27)",4,129984870,130022633,37764,1,Adgrb2-207,10489,Adgrb2-207;Adgrb2-205;Adgrb2-208;Adgrb2-204;Adgrb2-201;Adgrb2-202;Adgrb2-206,Adgrb2;Adgrb2;Adgrb2;Adgrb2;Adgrb2;Adgrb2;Adgrb2,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,8,230775,ENSMUSG00000028782,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13870,cg04102896,0.00000569,0.0000114,0.50121067,0.616578581,gain,ns,-0.00000495,0.0000193,-0.256419211,0.797797239,neg,ns,0.007597457,0.005650906,1.344467096,0.179780339,pos,ns,0.745257805,-0.000283049,0.000194334,-1.456508961,0.146264054,neg,ns,0.713403489,Dnah6,Dnah6_Exon,6,73142340,73142389,73142388,73142389,50,-,TCATCAAAGCAGCACCAGGCCCCTGACTGTGCCAAGCCACTGAAGAAGCG,"Exon (Dnah6-201/Dnah6, exon 30 of 77)",6,73017606,73221631,204026,2,Dnah6-201,79242,Dnah6-201;Dnah6-203;Dnah6-204;Dnah6-202,Dnah6;Dnah6;Dnah6;Dnah6,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,330355,ENSMUSG00000052861,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12204,cg22163954,-0.0000318,0.00000624,-5.087353054,0.00000063,loss,yes,-0.00000272,0.0000106,-0.256292432,0.797895035,neg,ns,0.017400515,0.003107609,5.599326339,4.74E-08,pos,ns,7.323851393,-0.000365358,0.00010687,-3.418700413,0.000713346,neg,ns,0.926101209,Map2k5,Map2k5_Intron,9,63345284,63345333,63345332,63345333,50,-,AACTGTTAACAAGTAGTCTGGAAAAATTGTCCGAAAATGACTTGTCCTCG,"Intron (Map2k5-201/Map2k5, intron 3 of 21)",9,63163768,63377902,214135,2,Map2k5-201,32569,Map2k5-201;Map2k5-203,Map2k5;Map2k5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,34,37,23938,ENSMUSG00000058444,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24658,cg03253445,0.000105615,0.0000418,2.526864148,0.012005835,gain,ns,0.0000182,0.000071,0.256257852,0.797921711,pos,ns,-0.026165206,0.020802778,-1.257774604,0.209419904,neg,ns,0.678982045,0.000903288,0.000715406,1.262623938,0.207673314,pos,ns,0.342502414,Stac3,Stac3_Intergenic_downstream,10,127510357,127510406,127510357,127510358,50,+,CGGTTTAATTGGATTTATCAGCAGTTAATAGGAAATTAAGCAAAGGGCCC,Distal Intergenic,10,127507225,127507992,768,1,Stac3-205,3132,Ndufa4l2-203;Ndufa4l2-202;Ndufa4l2-201;Stac3-202;Stac3-201;Stac3-204;Stac3-205,Ndufa4l2;Ndufa4l2;Ndufa4l2;Stac3;Stac3;Stac3;Stac3,-4561;-4561;0;0;0;5866;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,4,237611,ENSMUSG00000040287,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
10529,cg11185569,0.00000541,0.00000576,0.938801266,0.348563665,gain,ns,0.00000251,0.00000978,0.256233641,0.797940387,pos,ns,0.002546316,0.002866216,0.888389272,0.375020185,pos,ns,0.425945356,-0.0000964,0.0000986,-0.97794418,0.328864477,neg,ns,0.038532398,Chn2,Chn2_fiveUTR,6,54039975,54040024,54040023,54040024,50,+,GGCTGGTGCTTTCTGCGCGTCCCCAGGACTTTGCCATGGGCTGGGGGCCG,Promoter (<=1kb),6,54039554,54067798,28245,1,Chn2-208,421,Chn2-208;Chn2-201;Chn2-207;Chn2-205;Chn2-206,Chn2;Chn2;Chn2;Chn2;Chn2,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,2,69993,ENSMUSG00000004633,conserved gene and region,6,54039555,54040363,809,*,809,94,0.704573548,0.948961765,0.116192831,4.66E-78,CpGisland,TRUE,U1,Pr-A
25585,cg08749179,0.00000694,0.00000267,2.595437884,0.00989651,gain,ns,-0.00000116,0.00000454,-0.256232081,0.797941591,neg,ns,-0.000358924,0.00133035,-0.269796375,0.787496417,neg,ns,0.103751413,0.0000237,0.0000458,0.518351517,0.604582805,pos,ns,0.943465445,Ebf3,Ebf3_Intron,7,137263899,137263948,137263899,137263900,50,+,CGGCTGACATGTAGAAGAACAACTGAAATGAATACGGATGAAATTTGAAA,"Intron (Ebf3-204/Ebf3, intron 6 of 15)",7,137193673,137314445,120773,2,Ebf3-204,50497,Ebf3-204;Ebf3-201;Ebf3-202;Ebf3-203;Ebf3-208;Ebf3-205,Ebf3;Ebf3;Ebf3;Ebf3;Ebf3;Ebf3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,62,84,13593,ENSMUSG00000010476,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10668,cg27031302,-0.0000452,0.00000861,-5.249101411,0.000000284,loss,yes,-0.00000375,0.0000146,-0.256154342,0.79800156,neg,ns,-0.010444958,0.004283973,-2.438147692,0.015324163,neg,ns,1.814623241,-0.0000142,0.000147325,-0.09667134,0.923049868,neg,ns,0.669800044,Slc22a17,Slc22a17_threeUTR,14,54908955,54909004,54908955,54908956,50,+,CGAAGCCTCTGGGTTGGGTCGCACAGCTCCAGGCCTGGAGATACAGCAGG,Promoter (<=1kb),14,54907936,54908994,1059,2,Slc22a17-202,0,Slc22a17-209;Slc22a17-201;Slc22a17-212;Slc22a17-205;Slc22a17-206;Slc22a17-207;Slc22a17-203;Slc22a17-208;Slc22a17-204;Slc22a17-210;Slc22a17-211;Slc22a17-202,Slc22a17;Slc22a17;Slc22a17;Slc22a17;Slc22a17;Slc22a17;Slc22a17;Slc22a17;Slc22a17;Slc22a17;Slc22a17;Slc22a17,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,2,59049,ENSMUSG00000022199,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6866,cg26879535,-0.0000409,0.0000149,-2.739418566,0.006511176,loss,ns,0.0000065,0.0000254,0.25602722,0.798099628,pos,ns,-0.012901741,0.00743317,-1.735698357,0.083610846,neg,ns,1.07773738,0.000291954,0.000255626,1.142113893,0.254288062,pos,ns,0.303585324,Gm12131,Gm12131_Intergenic_downstream,11,39042068,39042117,39042068,39042069,50,-,CGATTATTAATGCATCTTTACCTACTGAAGTGTGAAATAAGCAATAGTAG,Distal Intergenic,11,39727070,39727712,643,2,Gm12131-201,685644,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,4,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8288,cg12421594,-0.00000217,0.00000112,-1.932319345,0.054230989,loss,ns,-0.000000489,0.00000191,-0.256018787,0.798106133,neg,ns,-0.00067924,0.00055954,-1.21392621,0.225699908,neg,ns,0.646468619,0.0000246,0.0000192,1.279129195,0.201808195,pos,ns,0.974567606,Grhpr,Grhpr_Intergenic_upstream,4,44957056,44957105,44957104,44957105,50,+,GACAAAGTATTCAGTATTAATGCAGTTGACCATGACGTCTTCTGTGTGCG,Distal Intergenic,4,44981395,44990734,9340,1,Grhpr-201,-24290,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,76238,ENSMUSG00000035637,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18679,cg16008850,-0.00000577,0.00000297,-1.942814751,0.052943716,loss,ns,0.00000129,0.00000504,0.255851988,0.798234815,pos,ns,0.004493454,0.001476994,3.042295984,0.002548528,pos,ns,2.593710613,-0.000163434,0.0000508,-3.217599331,0.001429413,neg,ns,0.927221164,Skap1,Skap1_Intron,11,96720267,96720316,96720315,96720316,50,-,CCACTTTCAATAATTTATTTTAAAATCAATGCTAATGAGGTTATGTCTCG,"Intron (Skap1-204/Skap1, intron 9 of 12)",11,96464593,96758941,294349,1,Skap1-204,255674,Skap1-204;Skap1-203;Skap1-209;Skap1-201,Skap1;Skap1;Skap1;Skap1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,40,46,78473,ENSMUSG00000057058,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20990,cg24527414,-0.00000419,0.00000134,-3.116415146,0.002002066,loss,ns,-0.000000584,0.00000228,-0.255732574,0.798326943,neg,ns,-0.0000798,0.000669114,-0.119320958,0.905098367,neg,ns,0.043304219,0.0000138,0.000023,0.599415667,0.549333558,pos,ns,0.965150992,Immp1l,Immp1l_Intron,2,105918163,105918212,105918163,105918164,50,-,CGACTTCCAGTCATTTGGAAAGGATGGGATGAAAAGGAACCTTGGTGATA,"Intron (Immp1l-201/Immp1l, intron 2 of 6)",2,105904638,105965558,60921,1,Immp1l-201,13525,Immp1l-201,Immp1l,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,7,66541,ENSMUSG00000042670,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2431,cg16238837,0.00000888,0.00000641,1.38544883,0.166911274,gain,ns,0.00000279,0.0000109,0.255720848,0.798335989,pos,ns,0.000967684,0.00319152,0.303204846,0.761937132,pos,ns,0.118080861,-0.0000039,0.000109756,-0.035577724,0.971641969,neg,ns,0.047598894,Ptf1a,Ptf1a_Intron,2,19430719,19430768,19430767,19430768,50,-,CCGCGAGCGACCATATAATTTGATTTGCCAGGCAATCTGCAGAGCGATCG,"Intron (Gm13344-201/Gm13344-201, intron 1 of 1)",2,19445663,19447501,1839,1,Ptf1a-201,-14944,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,21,19213,ENSMUSG00000026735,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
21729,cg06656085,-0.00000234,0.00000394,-0.595255331,0.552107086,loss,ns,-0.00000171,0.00000669,-0.255613142,0.798419088,neg,ns,0.000763508,0.001960639,0.389418092,0.697234268,pos,ns,0.156621276,0.00010552,0.0000674,1.564971021,0.118609911,pos,ns,0.944507049,Wdr25,Wdr25_Intron,12,108917513,108917562,108917513,108917514,50,-,CGTGTTTAATTATTCAAGTAGAAGTAGTAATTTAAACTAATTATTGCTTG,"Intron (Wdr25-202/Wdr25, intron 2 of 6)",12,108894272,109028452,134181,1,Wdr25-202,23241,Wdr25-202;Wdr25-203;Wdr25-201;Wdr25-207,Wdr25;Wdr25;Wdr25;Wdr25,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,212198,ENSMUSG00000040877,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8502,cg00149071,0.0000213,0.00000194,10.982012,6.42E-24,gain,yes,-0.000000841,0.00000329,-0.255604818,0.79842551,neg,ns,0.003316608,0.00096395,3.440644272,0.000659897,pos,ns,3.180523888,-0.000032,0.0000332,-0.965178165,0.335207908,neg,ns,0.020261023,Lbx1,Lbx1_Intergenic_downstream,19,45231453,45231502,45231453,45231454,50,-,CGCCCAGGCCCATTCGTCCCGGCCTTCATGGTCCGCGCTCCGAATTACAG,Distal Intergenic,19,45232684,45235812,3129,2,Lbx1-201,4359,Lbx1-201,Lbx1,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,30,50,16814,ENSMUSG00000025216,mapped to different genes,19,45231355,45231647,293,*,293,33,0.689419795,0.96381579,0.112627986,3.07E-27,CpGisland,TRUE,NA,NRS
3283,cg08804290,0.00000261,0.00000129,2.022138011,0.044020661,gain,ns,-0.00000056,0.00000219,-0.255566189,0.798455314,neg,ns,0.001716346,0.000642337,2.6720339,0.007937897,pos,ns,2.100294548,-0.0000308,0.0000221,-1.394098369,0.164286312,neg,ns,0.964132054,Usp34,Usp34_Exon,11,23464213,23464262,23464261,23464262,50,-,ATAGCTGCAGCTTATCTTCTGGTGTCCCTTATACCAAGCAATTCATTCCG,"Exon (Usp34-208/Usp34, exon 68 of 80)",11,23306895,23490560,183666,1,Usp34-208,157318,Usp34-208;Usp34-205;Usp34-203;Usp34-206,Usp34;Usp34;Usp34;Usp34,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,13,14,17847,ENSMUSG00000056342,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3526,cg18713298,-0.0000175,0.00000501,-3.486261849,0.000560538,loss,ns,-0.00000217,0.00000851,-0.25555763,0.798461918,neg,ns,-0.005755209,0.002493279,-2.308289037,0.021640939,neg,ns,1.66472389,0.000164256,0.0000857,1.915667544,0.056327143,pos,ns,0.922825612,Gm12067,Gm12067_Intergenic_downstream,11,24371590,24371639,24371638,24371639,50,-,GATAAAAATTTCACTTCAACTCGCAACTTCATTTATTTTGTTGACATTCG,Distal Intergenic,11,24552438,24553962,1525,2,Gm12067-201,182372,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,58,100417843,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13506,cg10340015,0.0000461,0.00000879,5.248313564,0.000000285,gain,yes,-0.00000381,0.0000149,-0.255551474,0.798466667,neg,ns,0.009133326,0.004373149,2.088501285,0.037568254,pos,ns,1.425178986,-0.000198216,0.000150392,-1.317996753,0.188477821,neg,ns,0.796525108,Foxi3,Foxi3_Intergenic_downstream,6,70992309,70992358,70992357,70992358,50,-,AACAGGCTCGCAAAGCCCAGTGCTAAGAGGTGGCATCTGAGAAGAATCCG,Distal Intergenic,6,70956606,70961066,4461,1,Foxi3-201,35752,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,3,232077,ENSMUSG00000055874,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19578,cg08346566,-0.0000332,0.00000845,-3.934194257,0.000103069,loss,ns,-0.00000367,0.0000144,-0.255546468,0.79847053,neg,ns,-0.00852475,0.004205833,-2.026887427,0.043529527,neg,ns,1.361216053,0.00013085,0.000144638,0.904670583,0.366342452,pos,ns,0.790906627,Spag17,Spag17_Intron,3,99945320,99945369,99945320,99945321,50,-,CGTTATTTCATAGAGCTTAGGGACACACCAGGAAATTGCAGGCCAGTTAG,"Intron (Spag17-201/Spag17, intron 3 of 3)",3,99885406,99960121,74716,1,Spag17-201,59914,Spag17-201;Spag17-204,Spag17;Spag17,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,2,74362,ENSMUSG00000027867,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5376,cg04968182,-0.0000128,0.00000487,-2.61764947,0.009288189,loss,ns,0.00000211,0.00000828,0.255542721,0.798473421,pos,ns,-0.004621884,0.002424317,-1.906468583,0.057513905,neg,ns,1.240227147,0.0000742,0.0000834,0.889992527,0.374160048,pos,ns,0.881982663,Hnrnpm,Hnrnpm_Exon,17,33649863,33649912,33649863,33649864,50,-,CGCTCCAGGCCCATCCGCTCCAGATTGTTGGCGCCCATGCGCTCCAGGCC,"Exon (Hnrnpm-206/Hnrnpm, exon 14 of 16)",17,33646233,33686860,40628,2,Hnrnpm-206,36948,Hnrnpm-206;Hnrnpm-202;Hnrnpm-213;Hnrnpm-205;Hnrnpm-204;Hnrnpm-201;Hnrnpm-210;Hnrnpm-211;Hnrnpm-214;Hnrnpm-207;Pram1-201;Pram1-202;Pram1-203,Hnrnpm;Hnrnpm;Hnrnpm;Hnrnpm;Hnrnpm;Hnrnpm;Hnrnpm;Hnrnpm;Hnrnpm;Hnrnpm;Pram1;Pram1;Pram1,0;0;-884;0;0;0;-1035;-176;9169;0;11807;11768;5046,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,7,76936,ENSMUSG00000059208,conserved gene but different region,17,33649654,33650161,508,*,508,31,0.641732284,0.61648072,0.061023622,2.85E-17,CpGisland,TRUE,U10,Tr-S
5574,cg22733290,0.00000137,0.00000745,0.184273733,0.853919203,gain,ns,0.00000323,0.0000127,0.255529655,0.798483502,pos,ns,0.002291944,0.00370644,0.618368043,0.536786821,pos,ns,0.270198155,0.0000249,0.000127464,0.195122598,0.845424794,pos,ns,0.912975605,Hdac9,Hdac9_Intron,12,34279162,34279211,34279210,34279211,50,+,AGCGTTTGAAGCTGGGAGCTGATGACGACATTATCATAAAAGCCTGCTCG,"Intron (Hdac9-205/Hdac9, intron 15 of 24)",12,34047580,34528328,480749,2,Hdac9-205,249117,Hdac9-205;Hdac9-204;Hdac9-206;Hdac9-210;Hdac9-207,Hdac9;Hdac9;Hdac9;Hdac9;Hdac9,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,19,31,79221,ENSMUSG00000004698,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23087,cg26677826,-0.00000134,0.000000903,-1.483910333,0.138848722,loss,ns,0.000000392,0.00000153,0.2555124,0.798496815,pos,ns,0.000465702,0.000449473,1.036107086,0.300959721,pos,ns,0.521491624,-0.0000249,0.0000155,-1.609267387,0.108575722,neg,ns,0.973516948,Rnf220,Rnf220_Exon,4,117285099,117285148,117285099,117285100,50,+,CGTCCCTTTAATATTTTATGCAGGTGCTAACGCGGCTTGGCTGTCACCTT,"Exon (Rnf220-210/Rnf220, exon 4 of 4)",4,117271463,117497052,225590,2,Rnf220-201,211904,Rnf220-201;Rnf220-203;Rnf220-212;Rnf220-202;Rnf220-205;Rnf220-209;Rnf220-213;Rnf220-210;Rnf220-206;Rnf220-208,Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,15,152,66743,ENSMUSG00000028677,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4033,cg14225127,-0.0000313,0.00000724,-4.316769377,0.0000213,loss,ns,0.00000314,0.0000123,0.255385897,0.798594421,pos,ns,-0.008778232,0.003605461,-2.434704068,0.015467927,neg,ns,1.810567882,0.0000804,0.000123992,0.648275332,0.517286769,pos,ns,0.926109903,Gm45647,Gm45647_Intergenic_upstream,8,26591222,26591271,26591222,26591223,50,+,CGGCCATAAAATTGTTTTCCAGGTACTGAAACATCCCATCAAGGTTTGTA,Distal Intergenic,8,26780315,26780509,195,1,Gm45647-201,-189044,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,46,62,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23238,cg21314020,-0.0000273,0.00000507,-5.393728832,0.000000137,loss,yes,-0.0000022,0.00000861,-0.255319039,0.798646008,neg,ns,-0.008452882,0.00252257,-3.35090077,0.000905123,neg,ns,3.043292608,0.000123175,0.0000868,1.419870564,0.156650211,pos,ns,0.908522576,Eri3,Eri3_Intron,4,117576499,117576548,117576547,117576548,50,-,ACCCGCCATAAATTATTTAGGAGCAGACTGTGGTGTAAATCAAAACCACG,"Intron (Eri3-201/Eri3, intron 3 of 8)",4,117550365,117674297,123933,1,Eri3-201,26134,Eri3-201;Eri3-205;Eri3-206,Eri3;Eri3;Eri3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,82,97,140546,ENSMUSG00000033423,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8802,cg26929837,-0.0000188,0.0000122,-1.543703974,0.123680243,loss,ns,0.00000529,0.0000207,0.255291429,0.798667312,pos,ns,0.002870059,0.006066714,0.473083038,0.636486871,pos,ns,0.19621055,-0.000271081,0.000208634,-1.299316556,0.194800781,neg,ns,0.736032271,Oga,Oga_Intron,19,45763686,45763735,45763734,45763735,50,+,AGAGCTGTGTAAATGAAAACATGGTTAATGCCTCAGTCGCTGCGCAAACG,"Intron (Oga-201/Oga, intron 10 of 15)",19,45750259,45783551,33293,2,Oga-201,19816,Oga-201;Oga-204;Oga-203;Oga-206;Oga-205,Oga;Oga;Oga;Oga;Oga,0;0;0;0;20041,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,21,76055,ENSMUSG00000025220,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21637,cg11804517,0.00000868,0.00000297,2.923619013,0.003714685,gain,ns,0.00000129,0.00000504,0.255204317,0.798734529,pos,ns,0.002027105,0.001477144,1.372314027,0.170957818,pos,ns,0.767111033,-0.0000931,0.0000508,-1.83254016,0.067830053,neg,ns,0.043463822,Zfhx3,Zfhx3_fiveUTR,8,108703627,108703676,108703675,108703676,50,-,AGGTGGCTAATTAGCCCTTCCCGTCGTGCCTGGGTAATGAAGCACATGCG,5' UTR,8,107942644,108961630,1018987,1,Zfhx3-204,760983,Zfhx3-204;Zfhx3-202,Zfhx3;Zfhx3,0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,11,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
24145,cg14486049,-0.000000505,0.00000175,-0.288173645,0.773406396,loss,ns,-0.000000759,0.00000298,-0.255100437,0.798814686,neg,ns,0.0014346,0.000872053,1.645083643,0.10096612,pos,ns,0.995824332,-0.0000443,0.00003,-1.475882591,0.140990405,neg,ns,0.079273185,D630033A02Rik,D630033A02Rik_Exon,10,122985645,122985694,122985693,122985694,50,-,AAGGCAGTAGCTTGCGCAGTTATCTCCACAGCGGGCAATGTCACAACCCG,Promoter (<=1kb),10,122985074,122985831,758,2,D630033A02Rik-202,137,D630033A02Rik-202;D630033A02Rik-201,D630033A02Rik;D630033A02Rik,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,402753,NA,mapped to different genes,10,122985225,122985694,470,*,470,59,0.644680851,1.224498808,0.125531915,1.84E-51,CpGisland,TRUE,U1,Pr-A
27417,cg15797720,-8.08E-08,0.00000564,-0.014321055,0.988583054,loss,ns,0.00000244,0.00000959,0.254917992,0.798955471,pos,ns,0.001989294,0.002809308,0.708108169,0.479410158,pos,ns,0.319292768,-0.000258205,0.0000966,-2.672600317,0.007924815,neg,ns,0.855466885,Fam78b,Fam78b_Exon,1,167078976,167079025,167079024,167079025,50,+,GTGAAACCCAATGCCAATGATGCCCAGGTCCTCATGTGGAGGCCCAAGCG,"Exon (Fam78b-205/Fam78b, exon 2 of 3)",1,167001417,167091302,89886,1,Fam78b-205,77559,Fam78b-205;Fam78b-206;Fam78b-204;Fam78b-202;Fam78b-201;Fam78b-203,Fam78b;Fam78b;Fam78b;Fam78b;Fam78b;Fam78b,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,9,226610,ENSMUSG00000060568,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10335,cg12882820,-0.0000027,0.00000409,-0.660948777,0.509136051,loss,ns,0.00000177,0.00000694,0.254872475,0.798990595,pos,ns,0.002172382,0.002034582,1.067728653,0.286473698,pos,ns,0.542915245,-0.00015941,0.00007,-2.278294157,0.023389227,neg,ns,0.928003863,Akap6,Akap6_Intron,12,53071152,53071201,53071200,53071201,50,+,TGCTGTGCTGACACAAATTGTGAATTAAATGAAATTGATGTCCTCTGTCG,"Intron (Akap6-201/Akap6, intron 10 of 13)",12,52699383,53155599,456217,1,Akap6-201,371769,Akap6-201;Akap6-202,Akap6;Akap6,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,13,238161,ENSMUSG00000061603,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5437,cg01088385,-0.000021,0.00000657,-3.193165648,0.001551789,loss,ns,-0.00000284,0.0000112,-0.25481609,0.799034107,neg,ns,0.000771039,0.003267924,0.235941443,0.813633913,pos,ns,0.089570958,-0.000180968,0.000112384,-1.610272124,0.108356206,neg,ns,0.884576219,Cnr1,Cnr1_Exon,4,33944746,33944795,33944746,33944747,50,+,CGGTGTTTGCATTCTGCAGTATGCTCTGCCTGCTGAACTCCACCGTGAAC,"Exon (Cnr1-201/Cnr1, exon 2 of 2)",4,33924632,33948831,24200,1,Cnr1-201,20114,Cnr1-201;Cnr1-202,Cnr1;Cnr1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,12801,ENSMUSG00000044288,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17040,cg04070435,-0.0000408,0.0000102,-4.000338373,0.0000792,loss,ns,0.00000442,0.0000173,0.254717663,0.799110064,pos,ns,0.002883682,0.005082251,0.567402521,0.570851397,pos,ns,0.243476932,-0.000239641,0.000174778,-1.371113976,0.171331177,neg,ns,0.764864538,Gm28877,Gm28877_Intergenic_upstream,9,88065226,88065275,88065226,88065227,50,-,CGGTGGGGCATGGTGTTTTCTCCTGCACAAACATATAATTAGGCTGTCTT,Distal Intergenic,9,88039089,88039692,604,2,Gm28877-201,-25583,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,7,102639108,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19234,cg25563382,0.0000261,0.00000506,5.155364483,0.000000452,gain,yes,-0.00000219,0.0000086,-0.254585316,0.7992122,neg,ns,0.005531743,0.00252065,2.194570267,0.028935984,pos,ns,1.538561746,-0.000170232,0.0000867,-1.963805778,0.050446027,neg,ns,0.040266805,Wnt11,Wnt11_Intergenic_upstream,7,98815415,98815464,98815463,98815464,50,+,GGCTCGTTGGTCTAGGGGTATGATTCTCGGTTTGGGTCCGAGAGGTCCCG,Distal Intergenic,7,98835112,98846587,11476,1,Wnt11-203,-19648,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,6,22411,ENSMUSG00000015957,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
26591,cg09690706,0.00000393,0.00000427,0.921333336,0.357592864,gain,ns,-0.00000185,0.00000725,-0.254550686,0.799238925,neg,ns,0.002113782,0.002124786,0.994820819,0.320599292,pos,ns,0.494037441,-0.0000429,0.0000731,-0.586606413,0.557894989,neg,ns,0.937328543,Casz1,Casz1_threeUTR,4,148944552,148944601,148944552,148944553,50,+,CGCCAAGCCCCAGGTCAAACCCGGATTCCTCCAGTTCCAGGAGAAGTGAG,3' UTR,4,148804429,148945129,140701,1,Casz1-201,140123,Casz1-201;Casz1-202;Casz1-204;Casz1-207,Casz1;Casz1;Casz1;Casz1,0;0;0;-2401,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18448,cg18957485,0.00000284,0.00000176,1.613770886,0.107594544,gain,ns,0.000000762,0.00000299,0.254520631,0.79926212,pos,ns,0.000436434,0.000876915,0.497692626,0.619053552,pos,ns,0.20827178,0.00000181,0.0000302,0.059856884,0.952308189,pos,ns,0.957374201,Zfp652,Zfp652_Exon,11,95763559,95763608,95763607,95763608,50,+,GAAATCTGTGGCAAAAGCTTCACCAGCCGCCCCAACATGAAGAGACACCG,"Exon (Zfp652-202/Zfp652, exon 6 of 6)",11,95712673,95772353,59681,1,Zfp652-202,50886,Polr2k-ps-201;Zfp652-202;Zfp652-203;Zfp652-204;Zfp652-201,Polr2k-ps;Zfp652;Zfp652;Zfp652;Zfp652,2068;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,3,268469,ENSMUSG00000075595,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7910,cg18301350,-0.0000688,0.0000116,-5.933414907,7.93E-09,loss,yes,-0.00000501,0.0000197,-0.254496711,0.79928058,neg,ns,-0.004938831,0.00576999,-0.855951363,0.392685793,neg,ns,0.405954811,-0.000182129,0.000198429,-0.917851808,0.35941,neg,ns,0.760736201,Hif1an,Hif1an_Intron,19,44632489,44632538,44632537,44632538,50,-,AAAATTCCATTCTGCTATCTGATTCAAAAAGTCCAGTCCCCCCAGCTTCG,"Intron (Gm35460-201/Gm35460-201, intron 3 of 6)",19,44562850,44563952,1103,1,Hif1an-202,69688,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,31,319594,ENSMUSG00000036450,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14075,cg10763467,0.000123208,0.0000162,7.61716628,3.17E-13,gain,yes,0.00000699,0.0000275,0.254470919,0.799300486,pos,ns,0.016952004,0.008050515,2.10570431,0.036034042,pos,ns,1.443287014,0.000405413,0.000276857,1.464343095,0.144113562,pos,ns,0.370078039,Evx2,Evx2_Intergenic_downstream,2,74651194,74651243,74651242,74651243,50,-,GCATTACTCGCAGTCAGCTAAATGAAACATTATTCTAAACATATGCATCG,Distal Intergenic,2,74655616,74659419,3804,2,Evx2-202,8225,Evx2-201;Evx2-202,Evx2;Evx2,0;8176,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,35,14029,ENSMUSG00000001815,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
24499,cg21608404,0.0000327,0.00000622,5.255846003,0.000000275,gain,yes,0.00000269,0.0000106,0.254316274,0.799419837,pos,ns,0.002099713,0.003094464,0.678538313,0.497936651,pos,ns,0.302825906,0.0000564,0.000106418,0.530270425,0.596304066,pos,ns,0.086831506,Kcna1,Kcna1_fiveUTR,6,126644781,126644830,126644781,126644782,50,-,CGCTCGGTCCATTTCTGGGCGCTGCAAGATCAGCAGAAACCTGAGAAAGC,Promoter (<=1kb),6,126640397,126644796,4400,2,Kcna1-201,0,Kcna1-201;Kcna1-202;Kcna1-203,Kcna1;Kcna1;Kcna1,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,12,16485,ENSMUSG00000047976,conserved gene and region,6,126644089,126644899,811,*,811,68,0.638717633,0.822711541,0.083847102,2.88E-46,CpGisland,TRUE,U3,Pr-B
9695,cg18153575,-0.0000027,0.00000805,-0.335706426,0.737319346,loss,ns,-0.00000348,0.0000137,-0.254195861,0.799512773,neg,ns,-0.006447139,0.004006107,-1.609327621,0.108562552,neg,ns,0.964319955,0.000201674,0.00013777,1.463845413,0.144249448,pos,ns,0.826961908,Gm7481,Gm7481_Intergenic_upstream,12,50112134,50112183,50112182,50112183,50,-,GCTGGTGGGCTGTGCAGAGTGTTATTCTGGCAGCATCGGAGTTGTCTACG,Distal Intergenic,12,49840757,49841751,995,2,Gm7481-201,-270432,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,27,37,665077,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27205,cg14818212,0.00000204,0.00000492,0.414073746,0.679106444,gain,ns,0.00000213,0.00000836,0.254116886,0.799573728,pos,ns,-0.003686909,0.002449988,-1.504868268,0.13337611,neg,ns,0.874921954,0.000207884,0.0000843,2.467322665,0.014152838,pos,ns,0.924079939,Top1,Top1_Intergenic_upstream,2,160552628,160552677,160552676,160552677,50,+,GCATTTCCAAAAAGTTTCTATTACATTTTGATTATGTTTATAGAATCTCG,Distal Intergenic,2,160645888,160722764,76877,1,Top1-201,-93211,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,8,21969,ENSMUSG00000070544,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8666,cg15801833,0.00000566,0.00000445,1.272152715,0.204272299,gain,ns,0.00000192,0.00000756,0.254097195,0.799588926,pos,ns,-0.001319917,0.002215586,-0.595741732,0.551782465,neg,ns,0.258232105,0.0000346,0.0000762,0.454191576,0.650008783,pos,ns,0.870008245,Gm12161,Gm12161_Intergenic_upstream,11,45514738,45514787,45514786,45514787,50,+,TCCCCAACAGACTGTACTCATCAGTTTTCCCATTCTCCAGGTAGCTGCCG,Distal Intergenic,11,45280594,45280954,361,2,Gm12161-201,-233784,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,10,382510,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17896,cg05658303,0.0000102,0.00000948,1.080738144,0.280653657,gain,ns,0.00000409,0.0000161,0.25406791,0.799611529,pos,ns,-0.004477598,0.004715818,-0.949484713,0.34311376,neg,ns,0.464561865,-0.0000108,0.000162177,-0.066558279,0.946976265,neg,ns,0.781305934,Irx5,Irx5_Intergenic_downstream,8,92384513,92384562,92384513,92384514,50,+,CGATGACACCATGTCAAAACATAAAATGCATGCTTTGGCTCTTAAGCCAA,Distal Intergenic,8,92357749,92361456,3708,1,Irx5-201,26764,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,11,30,54352,ENSMUSG00000031737,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12038,cg22421698,0.000000576,0.00000223,0.258395596,0.796273086,gain,ns,0.000000961,0.00000379,0.253805116,0.799814372,pos,ns,0.000198557,0.001109001,0.179041029,0.858022445,pos,ns,0.066501351,-0.00000303,0.0000381,-0.079457825,0.936719743,neg,ns,0.945405813,Fbxo38,Fbxo38_Exon,18,62514854,62514903,62514854,62514855,50,-,CGAGGGTAGTCTTCATTAGACTGCACGTCACAACTCTCAGGCTGGGAGCT,"Exon (Fbxo38-201/Fbxo38, exon 15 of 22)",18,62504155,62548695,44541,2,Fbxo38-201,33792,Fbxo38-201;Fbxo38-203;Fbxo38-204,Fbxo38;Fbxo38;Fbxo38,0;0;5826,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,6,107035,ENSMUSG00000042211,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12267,cg03972038,-0.0000126,0.0000025,-5.047536951,0.000000764,loss,yes,0.00000108,0.00000424,0.253701227,0.799894564,pos,ns,0.000355868,0.001243489,0.286185095,0.774927512,pos,ns,0.11073892,-0.0000887,0.0000428,-2.075191056,0.038793307,neg,ns,0.955996432,AL772407.1,AL772407.1_Intergenic_upstream,2,63670250,63670299,63670250,63670251,50,+,CGGGAATCTGTTTGAAAAATGAGCCATAGAATGGCTTTTAAATACGGAGA,Distal Intergenic,2,63410771,63411266,496,2,AL772407.1-201,-258984,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,7,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16453,cg10415826,-0.0000123,0.00000411,-2.9992687,0.00292558,loss,ns,0.00000177,0.00000698,0.253557201,0.800005743,pos,ns,-0.0000585,0.002043767,-0.028635716,0.977173552,neg,ns,0.010028296,-0.00012926,0.0000703,-1.839083746,0.066859145,neg,ns,0.911323935,Ylpm1,Ylpm1_Exon,12,85028837,85028886,85028837,85028838,50,-,CGTTTTGAAGGAAATCGCCCCGATGGGCCAAGACCCAGATATGAAGGTCA,"Exon (Ylpm1-201/Ylpm1, exon 5 of 21)",12,84996321,85070492,74172,1,Ylpm1-207,32516,Ylpm1-207;Ylpm1-201;Ylpm1-202;Ylpm1-203,Ylpm1;Ylpm1;Ylpm1;Ylpm1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,13,56531,ENSMUSG00000021244,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2294,cg11200278,-0.0000475,0.000022,-2.161680608,0.031407879,loss,ns,-0.00000947,0.0000373,-0.253550052,0.800011261,neg,ns,0.000974342,0.010937215,0.089085061,0.929071835,pos,ns,0.031950706,-0.000323364,0.00037613,-0.859713396,0.390611388,neg,ns,0.3761823,Gm28343,Gm28343_Intergenic_upstream,1,18961641,18961690,18961689,18961690,50,+,AGAGTGGCTGCAGGCAGCTGCTTTGCTCCAGGCCACATTCAATTATGTCG,Distal Intergenic,1,19037266,19037377,112,1,Gm28343-201,-75576,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,3,108167808,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27766,cg02770318,-0.0000256,0.00000436,-5.857213556,0.000000012,loss,yes,-0.00000188,0.00000741,-0.253414643,0.800115791,neg,ns,0.002793919,0.002171334,1.286729419,0.199148645,pos,ns,0.700822644,-0.000483765,0.0000747,-6.478537963,3.63E-10,neg,yes,0.946957899,Gm9722,Gm9722_Intergenic_downstream,1,185866139,185866188,185866139,185866140,50,+,CGGAGTTCCACATCACACAGTCCCTGTCCCATCTGGTGCTAATTGGCACC,Distal Intergenic,1,185878084,185878885,802,2,Gm9722-201,12697,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,677785,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12000,cg16636660,0.0000242,0.00000971,2.496116557,0.013075355,gain,ns,-0.00000418,0.0000165,-0.253392635,0.80013278,neg,ns,-0.004126905,0.004834426,-0.853649441,0.393958387,neg,ns,0.40454965,-0.0000994,0.000166256,-0.597773142,0.550427738,neg,ns,0.537220877,Slc4a10,Slc4a10_Exon,2,62244345,62244394,62244345,62244346,50,+,CGTGCAGGGACTGGGAGGCCAACAAAAGGGGCATACTAGTCCATGTGGGA,"Exon (Slc4a10-203/Slc4a10, exon 8 of 27)",2,62046462,62326730,280269,1,Slc4a10-202,197883,Slc4a10-202;Slc4a10-206;Slc4a10-201;Slc4a10-203,Slc4a10;Slc4a10;Slc4a10;Slc4a10,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,12,94229,ENSMUSG00000026904,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23355,cg20409532,-0.00000534,0.00000138,-3.877864334,0.000128688,loss,ns,-0.000000592,0.00000234,-0.253376663,0.800145111,neg,ns,-0.000959761,0.000684805,-1.401510481,0.162061849,neg,ns,0.79031921,-0.0000105,0.0000236,-0.445962687,0.655935513,neg,ns,0.973174281,Smg1,Smg1_threeUTR,7,118135461,118135510,118135509,118135510,50,+,TGGCTTTGGATGCCTGAGGCTGAGTTGATTCTGGTGGATGTCTGACCTCG,3' UTR,7,118131308,118243637,112330,2,Smg1-201,108127,Smg1-201;Smg1-204;Smg1-207,Smg1;Smg1;Smg1,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,7,9,233789,ENSMUSG00000030655,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18193,cg22767566,-0.0000189,0.00000534,-3.538859966,0.000463403,loss,ns,0.0000023,0.00000907,0.253338714,0.800174406,pos,ns,0.000796393,0.002658276,0.299590079,0.764690621,pos,ns,0.116514236,0.00000873,0.0000914,0.09550253,0.923977386,pos,ns,0.739357603,Tdrkh,Tdrkh_threeUTR,3,94424558,94424607,94424558,94424559,50,+,CGAGTGCTGCTTATCAGTGGTTTTCCTGTTCAGGTGTGCAAGGCCAAAGC,3' UTR,3,94413273,94434668,21396,1,Tdrkh-202,11285,Gm42464-202;Gm42464-201;Tdrkh-202;Tdrkh-206;Tdrkh-208;Tdrkh-203;Tdrkh-201;Tdrkh-207;Tdrkh-204;Tdrkh-205,Gm42464;Gm42464;Tdrkh;Tdrkh;Tdrkh;Tdrkh;Tdrkh;Tdrkh;Tdrkh;Tdrkh,-2124;-2290;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,1,72634,ENSMUSG00000041912,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26469,cg20381578,-0.0000128,0.00000788,-1.627800161,0.104583148,loss,ns,-0.00000339,0.0000134,-0.25323316,0.800255894,neg,ns,0.000142394,0.003920068,0.03632424,0.971047201,pos,ns,0.012759659,-0.0000174,0.000134811,-0.128918935,0.897505394,neg,ns,0.827563855,Gm572,Gm572_Intergenic_downstream,4,148706777,148706826,148706825,148706826,50,+,TAAAATGTGACTATGGGATTGCTAATACAGACAGACTAATGTTTCCATCG,Distal Intergenic,4,148643317,148671572,28256,1,Gm572-201,63460,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,11,230909,ENSMUSG00000070577,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12462,cg07224849,0.00000988,0.00000732,1.350733796,0.177765843,gain,ns,-0.00000315,0.0000124,-0.253229006,0.800259101,neg,ns,-0.006662167,0.003641916,-1.82930244,0.068314744,neg,ns,1.165485555,0.000311854,0.000125245,2.489951421,0.013299722,pos,ns,0.681061725,Gm13577,Gm13577_Intergenic_downstream,2,64394977,64395026,64394977,64394978,50,-,CGTGTTGTCTGATGTTGAAGTTAGCTGTCATCCGGCACTAGATTAGTCAC,Distal Intergenic,2,64474745,64474949,205,2,Gm13577-201,79972,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,17,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18479,cg26163178,8.93E-08,0.00000148,0.060168815,0.952059953,gain,ns,0.000000638,0.00000252,0.253092531,0.800364463,pos,ns,0.000689937,0.000738379,0.934393975,0.350827955,pos,ns,0.454905808,-0.00000577,0.0000254,-0.22735295,0.820299168,neg,ns,0.965460696,Atr,Atr_Exon,9,95947126,95947175,95947126,95947127,50,-,CGCCTGACTCATAATATGGTTAATGGAATGGGTCCTATGGGAACAGAGGG,"Exon (Atr-201/Atr, exon 45 of 47)",9,95857597,95951644,94048,1,Atr-201,89529,Atr-201;Atr-213,Atr;Atr,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,245000,ENSMUSG00000032409,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12241,cg20226394,-0.0000143,0.00000913,-1.568478902,0.117789548,loss,ns,0.00000392,0.0000155,0.25308076,0.80037355,pos,ns,-0.008820528,0.004542438,-1.941804782,0.053066464,neg,ns,1.275179851,0.000187591,0.000156214,1.200856502,0.230723616,pos,ns,0.834848778,Epha3,Epha3_Intron,16,63556636,63556685,63556684,63556685,50,-,CACTTTTACTAGACAAATTAGATAGGTTTCAATCCATGCAGCTGTAAACG,"Intron (Epha3-201/Epha3, intron 15 of 16)",16,63543534,63864158,320625,2,Epha3-201,307473,Epha3-201;Epha3-203,Epha3;Epha3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,8,13837,ENSMUSG00000052504,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12704,cg16863579,0.00000192,0.00000174,1.10183353,0.271388772,gain,ns,-0.000000749,0.00000296,-0.253040212,0.800404855,neg,ns,0.000823306,0.000867411,0.949152348,0.343282479,pos,ns,0.464348362,-0.0000426,0.0000298,-1.429165529,0.153963556,neg,ns,0.960144367,Ptprm,Ptprm_Exon,17,66912317,66912366,66912365,66912366,50,-,TGGGCAAGATGACTCGTCTATACTTGAACATCTGACCTGTTAGTTGGCCG,"Exon (Ptprm-201/Ptprm, exon 14 of 33)",17,66666947,67354073,687127,2,Ptprm-201,441707,Ptprm-201;Ptprm-202;Ptprm-203;Ptprm-207,Ptprm;Ptprm;Ptprm;Ptprm,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,5,19274,ENSMUSG00000033278,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21013,cg06788975,0.00000367,0.00000228,1.608103968,0.108830349,gain,ns,0.000000982,0.00000388,0.253019166,0.800421103,pos,ns,0.000696639,0.00113674,0.612839556,0.540431748,pos,ns,0.267259146,0.0000263,0.0000391,0.672256483,0.50192116,pos,ns,0.958903644,Vrk1,Vrk1_Intron,12,106069128,106069177,106069176,106069177,50,+,GTGCCAGCTGAGGGTTACCTGCCCACTGCAGTTATTGTATGTAATTATCG,"Intron (Vrk1-202/Vrk1, intron 11 of 12)",12,106010228,106075220,64993,1,Vrk1-202,58900,Vrk1-202;Vrk1-205;Vrk1-203;Vrk1-201;Vrk1-204,Vrk1;Vrk1;Vrk1;Vrk1;Vrk1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,37,22367,ENSMUSG00000021115,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10675,cg00945808,0.0000286,0.00000395,7.243739014,3.48E-12,gain,yes,-0.0000017,0.00000671,-0.252993689,0.800440773,neg,ns,0.005028815,0.001965099,2.559064721,0.010969986,pos,ns,1.959793916,-0.000122274,0.0000676,-1.809330737,0.071368165,neg,ns,0.060764085,Zfp462,Zfp462_Intron,4,54947763,54947812,54947763,54947764,50,+,CGCACCCCCTGGTGCTCCGGCGTTTTGTGTGGCAGGAGAAGATTGTCTTC,"Intron (Zfp462-204/Zfp462, intron 1 of 2)",4,54945048,55008314,63267,1,Zfp462-204,2715,Zfp462-204;Zfp462-203,Zfp462;Zfp462,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,23,242466,ENSMUSG00000060206,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
22341,cg21184143,-5.97E-08,0.000000657,-0.090881079,0.927645779,loss,ns,-0.000000282,0.00000112,-0.2527948,0.80059433,neg,ns,-0.000375805,0.000327008,-1.149222722,0.251350043,neg,ns,0.599721035,0.0000188,0.0000112,1.674852566,0.094971592,pos,ns,0.986820787,Brpf1,Brpf1_Exon,6,113318625,113318674,113318625,113318626,50,-,CGGCGCCAGGCAGAAAAAATGGGCATTGACTTTGAGACGGGCATGCATAT,"Exon (Brpf1-204/Brpf1, exon 7 of 14)",6,113307137,113324857,17721,1,Brpf1-204,11488,Brpf1-204;Brpf1-209;Brpf1-203;Brpf1-202;Brpf1-201;Brpf1-210;Brpf1-208;Brpf1-205;Brpf1-207;Brpf1-206,Brpf1;Brpf1;Brpf1;Brpf1;Brpf1;Brpf1;Brpf1;Brpf1;Brpf1;Brpf1,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,Exon,14,16,78783,ENSMUSG00000001632,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
460,cg08223232,-0.000000738,0.0000018,-0.409493437,0.68246038,loss,ns,0.000000774,0.00000306,0.2527694,0.800613941,pos,ns,0.00266173,0.000897551,2.965546688,0.003256128,pos,ns,2.487298533,-0.0000693,0.0000309,-2.245286255,0.025454323,neg,ns,0.954388956,Upf2,Upf2_threeUTR,2,6055437,6055486,6055437,6055438,50,+,CGTTGATCCAGCAGCACGTGTCATTTCATTAGGTCCTGTATCTGATGTTG,3' UTR,2,5951469,6056703,105235,1,Upf2-201,103968,Upf2-201;Upf2-202;Upf2-203,Upf2;Upf2;Upf2,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,5,326622,ENSMUSG00000043241,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11044,cg18788933,0.000078,0.0000128,6.118188925,2.85E-09,gain,yes,0.00000548,0.0000217,0.252735223,0.800640329,pos,ns,0.015451329,0.006349274,2.433558286,0.015516025,pos,ns,1.80921953,-0.000281395,0.000218351,-1.288726873,0.198453965,neg,ns,0.745309311,Gm18027,Gm18027_Intergenic_upstream,12,56455383,56455432,56455431,56455432,50,+,CTTGTTGTGTTGGTTTAATTAGTCAACAAATCGGTCCTTACTTGATTGCG,Distal Intergenic,12,56409939,56410557,619,2,Gm18027-201,-44826,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,8,100416309,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8906,cg05907696,0.0000063,0.00000163,3.864770245,0.000135453,gain,ns,-0.000000699,0.00000277,-0.252708635,0.800660858,neg,ns,0.001180865,0.000810771,1.456471203,0.146274478,pos,ns,0.834831443,-0.00000581,0.0000279,-0.208352736,0.835090383,neg,ns,0.074639388,Helt,Helt_Promoter,8,46294695,46294744,46294743,46294744,50,+,AGCTCTTGGAGACGGAGGCGCCCCGTTTGTTCCCAGGCTTTTCTCACACG,Promoter (<=1kb),8,46292039,46294671,2633,2,Helt-201,-24,Helt-201;Helt-202;Helt-203,Helt;Helt;Helt,0;-706;-1360,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,15,22,234219,ENSMUSG00000047171,conserved gene and region,8,46294678,46294897,220,*,220,21,0.65,0.923630548,0.095454546,6.99E-16,CpGisland,TRUE,U13,Hc-P
7227,cg09459008,0.00002,0.0000077,2.596114094,0.009877476,gain,ns,-0.00000331,0.0000131,-0.252703212,0.800665045,neg,ns,0.002117943,0.003831964,0.552704359,0.580864176,pos,ns,0.235925407,0.0000401,0.000131781,0.304461406,0.760980675,pos,ns,0.850891853,Gria3,Gria3_Intron,X,41669622,41669671,41669622,41669623,50,-,CGCTGAAGGTCTTTTTGTACTGATTAGCAATCACATTTTGACCCACTGTT,"Intron (Gria3-202/Gria3, intron 15 of 16)",20,41401128,41676585,275458,1,Gria3-202,268494,Gria3-202;Gria3-201;Gria3-208;Gria3-206;Gria3-209,Gria3;Gria3;Gria3;Gria3;Gria3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,26,53623,ENSMUSG00000001986,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17146,cg01468418,-0.00000366,0.00000264,-1.38617507,0.166689664,loss,ns,-0.00000113,0.00000449,-0.252657367,0.800700443,neg,ns,-0.000818847,0.001314571,-0.622900434,0.533807914,neg,ns,0.272614992,0.0000152,0.0000452,0.336146306,0.736987951,pos,ns,0.934413898,Cyld,Cyld_Intergenic_downstream,8,88758679,88758728,88758727,88758728,50,+,TTCTAATGGATGAGGCCAGGCTGACCTCGAATAAACATATTTATCAACCG,Distal Intergenic,8,88735111,88738206,3096,1,Cyld-211,23568,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,74256,ENSMUSG00000036712,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7594,cg19931377,-0.0000515,0.0000121,-4.263143309,0.0000268,loss,ns,0.00000519,0.0000205,0.252584139,0.800756984,pos,ns,0.051369923,0.00601721,8.537166688,6.25E-16,pos,yes,15.2038224,-0.000637451,0.000206931,-3.080494032,0.002251774,neg,ns,0.854819218,Zbtb20,Zbtb20_Intron,16,43371397,43371446,43371397,43371398,50,+,CGATAGTGCTTTGAAGTACTGGAGTGCCCAGTTCACATCAGGGCATGCGT,"Intron (Zbtb20-209/Zbtb20, intron 7 of 7)",16,42875881,43463175,587295,1,Zbtb20-209,495516,Zbtb20-209;Zbtb20-211;Zbtb20-217;Zbtb20-218;Zbtb20-204;Zbtb20-215;Zbtb20-201;Zbtb20-203;Zbtb20-214;Zbtb20-213;Zbtb20-219;Zbtb20-216,Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,98,56490,ENSMUSG00000022708,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7877,cg16071564,-0.0000388,0.00000768,-5.054592382,0.000000739,loss,yes,-0.0000033,0.000013,-0.252575181,0.800763901,neg,ns,-0.008734528,0.003822616,-2.284961295,0.02299032,neg,ns,1.638454991,-0.00013228,0.000131459,-1.006241178,0.315084339,neg,ns,0.79970953,Nrcam,Nrcam_Exon,12,44584873,44584922,44584873,44584874,50,-,CGGAGCTTCTTTGGGTTAAAGGGTCTAATGCCAGGAACAGCATACAAAGT,"Exon (Nrcam-201/Nrcam, exon 28 of 31)",12,44328886,44600760,271875,1,Nrcam-202,255987,Nrcam-202;Nrcam-201;Nrcam-215;Nrcam-214;Nrcam-203;Nrcam-205,Nrcam;Nrcam;Nrcam;Nrcam;Nrcam;Nrcam,0;0;0;0;0;-21,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,3,319504,ENSMUSG00000020598,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1753,cg24613973,0.00000906,0.00000257,3.523512948,0.000489977,gain,ns,0.0000011,0.00000437,0.25257393,0.800764867,pos,ns,0.00169039,0.001279417,1.321218891,0.187402735,pos,ns,0.727224075,-0.0000521,0.000044,-1.183288351,0.23760152,neg,ns,0.022090255,Kctd1,Kctd1_fiveUTR,18,15063559,15063608,15063559,15063560,50,+,CGCCATATTGCCGTCTCTCTGCCAGTCCTCGGGCAGGGCGCATGCGCTAT,5' UTR,18,14968685,15151446,182762,2,Kctd1-201,87838,Kctd1-201;Kctd1-202;Kctd1-206;Kctd1-205,Kctd1;Kctd1;Kctd1;Kctd1,0;0;0;-1670,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,9,24,106931,ENSMUSG00000036225,conserved gene but different region,18,15063315,15063752,438,*,438,43,0.673515982,0.892352885,0.098173516,1.42E-32,CpGisland,TRUE,U3,Pr-B
18988,cg03760295,-0.0000267,0.0000109,-2.458789368,0.014486936,loss,ns,0.00000466,0.0000184,0.252442493,0.800866356,pos,ns,-0.014909188,0.005402792,-2.759534206,0.00613266,neg,ns,2.212351078,0.000463281,0.000185802,2.493417229,0.013173174,pos,ns,0.826310003,Nfia,Nfia_threeUTR,4,98114144,98114193,98114144,98114145,50,-,CGTTTGGCGCTGTTGTATGGTGTGATTGTCAGTGTATGGTGTCACTTCCT,3' UTR,4,97777608,98118871,341264,1,Nfia-202,336536,Nfia-202;Nfia-203;Nfia-205;Nfia-201;Nfia-204,Nfia;Nfia;Nfia;Nfia;Nfia,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,8,44,18027,ENSMUSG00000028565,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15668,cg15229803,-0.000000667,0.00000187,-0.356150206,0.721970337,loss,ns,0.000000803,0.00000318,0.252433427,0.800873356,pos,ns,-0.000115133,0.000931906,-0.12354568,0.901755067,neg,ns,0.044911409,-0.00000657,0.000032,-0.205113595,0.83761799,neg,ns,0.967053177,Nfib,Nfib_Promoter,4,82704866,82704915,82704914,82704915,50,+,AAAAATAATGAACTGAATATGCATATCCTCATTAACTAAATTTAATTACG,Promoter (<=1kb),4,82498321,82705750,207430,2,Nfib-212,835,Nfib-212,Nfib,0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,3,66,18028,ENSMUSG00000008575,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27233,cg09541736,0.000000579,0.00000134,0.431629223,0.666310946,gain,ns,-0.000000575,0.00000228,-0.252365781,0.80092559,neg,ns,0.001110995,0.000667828,1.663595317,0.097203862,pos,ns,1.012316478,-0.0000161,0.000023,-0.700280567,0.484277321,neg,ns,0.966229664,Klhl20,Klhl20_Exon,1,161109700,161109749,161109748,161109749,50,+,GGTTGGGGAACCCCTTCTGGCAGTTTGTTGGGGTCTCCAAGGGTGCAGCG,"Exon (Klhl20-201/Klhl20, exon 3 of 12)",1,161088375,161131511,43137,2,Klhl20-201,21762,Klhl20-201;Klhl20-203;Klhl20-202;Klhl20-205;Klhl20-204,Klhl20;Klhl20;Klhl20;Klhl20;Klhl20,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,226541,ENSMUSG00000026705,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1704,cg06910518,-0.00000492,0.00000383,-1.285069726,0.199727214,loss,ns,0.00000164,0.00000651,0.252349566,0.800938111,pos,ns,-0.002437434,0.001906377,-1.278568802,0.202005319,neg,ns,0.694637195,-0.0000494,0.0000656,-0.753643386,0.451635401,neg,ns,0.922321583,Ss18,Ss18_threeUTR,18,14637405,14637454,14637453,14637454,50,+,ATGTTGTGAGGAATCCTCATAAGGCCTATCGTAGCCTTGTTCAGGATACG,Promoter (<=1kb),18,14633542,14637406,3865,2,Ss18-212,0,Ss18-202;Ss18-201;Ss18-210;Ss18-203;Ss18-206;Ss18-205;Ss18-212;Ss18-204;Ss18-209;Ss18-211,Ss18;Ss18;Ss18;Ss18;Ss18;Ss18;Ss18;Ss18;Ss18;Ss18,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,5,10,268996,ENSMUSG00000037013,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13198,cg06997381,0.00000952,0.0000024,3.960483716,0.0000928,gain,ns,0.00000103,0.00000409,0.25232621,0.800956147,pos,ns,0.000713245,0.001196991,0.595865188,0.551700087,pos,ns,0.258296948,0.000039,0.0000412,0.94627965,0.344742972,pos,ns,0.050679391,Ube2ql1,Ube2ql1_Exon,13,69738779,69738828,69738827,69738828,50,+,TCATGTCCTGCCACAGCACCGAGTCCTTGTCCACCTGGTGCAGCTTCACG,"Exon (Ube2ql1-201/Ube2ql1, exon 1 of 2)",13,69702832,69739889,37058,2,Ube2ql1-201,1061,Ube2ql1-201,Ube2ql1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,76980,ENSMUSG00000052981,conserved gene and region,13,69738798,69740101,1304,*,1304,165,0.741564417,0.921456103,0.126533742,1.63E-143,CpGisland,TRUE,U3,Pr-B
11712,cg09966078,0.000031,0.00000893,3.4744346,0.00058486,gain,ns,-0.00000383,0.0000152,-0.252279978,0.800991846,neg,ns,-0.006382467,0.004444858,-1.435921653,0.152032928,neg,ns,0.818062342,0.000541659,0.000152858,3.543539641,0.000455572,pos,ns,0.740426279,Rai1,Rai1_Intron,11,60177421,60177470,60177469,60177470,50,+,CCAAGCAGTTTGCGGTGTGGCAGGCGGCCAGAAAAGCGTTTCTTTAAACG,"Intron (Rai1-201/Rai1, intron 2 of 5)",11,60105013,60199195,94183,1,Rai1-201,72408,Rai1-201;Rai1-205;Rai1-204;Rai1-207;Rai1-202;Rai1-203,Rai1;Rai1;Rai1;Rai1;Rai1;Rai1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,6,19377,ENSMUSG00000062115,conserved gene and region,11,60177433,60177548,116,*,116,11,0.629310345,0.962292609,0.094827586,0.000000019,CpGisland,TRUE,U12,Tr-I
6306,cg10557100,-0.0000571,0.00000987,-5.781272844,1.81E-08,loss,yes,0.00000423,0.0000168,0.25226643,0.801002308,pos,ns,-0.001500803,0.004913429,-0.305449146,0.760229093,neg,ns,0.119055514,-0.000312005,0.000168972,-1.846485889,0.065774737,neg,ns,0.810793137,Tshz3,Tshz3_Intergenic_downstream,7,36789417,36789466,36789417,36789418,50,+,CGACCCAAAAGACTACCAAGTGTGAAATTAAGGAACAGCTCCTCTACTTT,Distal Intergenic,7,36698217,36702113,3897,1,Tshz3-202,91200,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,21,58,243931,ENSMUSG00000021217,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26918,cg15773378,-0.0000182,0.00000721,-2.522950145,0.012137505,loss,ns,0.00000309,0.0000122,0.252232915,0.801028188,pos,ns,-0.001027541,0.003587566,-0.286417299,0.774749846,neg,ns,0.110838502,-0.000245998,0.000123376,-1.993886079,0.047040322,neg,ns,0.832653239,Cacna1e,Cacna1e_fiveUTR,1,154701332,154701381,154701380,154701381,50,+,GACGATGCAGTTGGCAATGATGGTGGCCAGGATCATGTACTCAAATGGCG,5' UTR,1,154390731,154726356,335626,2,Cacna1e-203,24975,Cacna1e-203;Cacna1e-201;Cacna1e-207;Cacna1e-206;Cacna1e-209;Cacna1e-204,Cacna1e;Cacna1e;Cacna1e;Cacna1e;Cacna1e;Cacna1e,0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,9,19,12290,ENSMUSG00000004110,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2289,cg12055515,0.00000353,0.00000528,0.667595874,0.504888264,gain,ns,0.00000226,0.00000898,0.252225143,0.80103419,pos,ns,-0.001923286,0.002630304,-0.731202854,0.46520758,neg,ns,0.332353217,0.000132984,0.0000905,1.470150411,0.142535218,pos,ns,0.901899102,Meis1,Meis1_Intron,11,18945700,18945749,18945748,18945749,50,-,CGAGCTATCAAAACCATGCACTATATGTCAAACTGTCAAACCTTTCAGCG,"Intron (Meis1-206/Meis1, intron 7 of 9)",11,18879817,19018985,139169,2,Meis1-206,73236,Meis1-206;Meis1-202;Meis1-209;Meis1-201;Meis1-203;Meis1-208;Meis1-207,Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,88,17268,ENSMUSG00000020160,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16495,cg26109076,0.0000341,0.00000754,4.52292863,0.0000087,gain,ns,-0.00000323,0.0000128,-0.252224324,0.801034822,neg,ns,-0.000414632,0.003754044,-0.110449361,0.912124478,neg,ns,0.039945889,-0.0000101,0.000129101,-0.078289829,0.937648017,neg,ns,0.684425178,Emx1,Emx1_Intergenic_downstream,6,85206234,85206283,85206234,85206235,50,-,CGGTAAATATTGGTGTTGTGACTTCATTAATAAAGGCTTCTGTGAGCCTG,Downstream (1-2kb),6,85193519,85204462,10944,1,Emx1-202,12764,Emx1-201;Emx1-202,Emx1;Emx1,18796;12715,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,2,2,13796,ENSMUSG00000033726,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24065,cg04377933,-0.0000049,0.00000492,-0.996940154,0.319571092,loss,ns,0.00000211,0.00000835,0.252162228,0.801082774,pos,ns,0.009600044,0.002446486,3.924014034,0.000107308,pos,ns,3.969366502,-0.000453658,0.0000841,-5.392058901,0.000000138,neg,yes,0.867148999,Rimklb,Rimklb_Intron,6,122450495,122450544,122450495,122450496,50,+,CGAACACATACGCCACCTACATTTAAAATAGGGTAGCATTTGTATGCCCA,"Intron (Rimklb-204/Rimklb, intron 6 of 7)",6,122447296,122466587,19292,2,Rimklb-204,16043,Rimklb-204;Rimklb-202;Rimklb-201;Rimklb-206,Rimklb;Rimklb;Rimklb;Rimklb,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,7,108653,ENSMUSG00000040649,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3765,cg05385158,0.00000145,0.0000033,0.439746848,0.660426876,gain,ns,0.00000141,0.0000056,0.252154731,0.801088563,pos,ns,0.002341188,0.001640784,1.426871287,0.154623399,pos,ns,0.810724784,-0.0000557,0.0000564,-0.987463327,0.324185641,neg,ns,0.906639032,Cic,Cic_Exon,7,25292727,25292776,25292775,25292776,50,-,AACACCCCCAAGAGTGCCAAGTGCGAGGGGGACATCTTCACCTTTGACCG,"Exon (Cic-212/Cic, exon 19 of 21)",7,25267704,25294159,26456,1,Cic-212,25023,Cic-212;Cic-202;Cic-201;Cic-207;Cic-210;Cic-208;Cic-206;Cic-215;Cic-209;Cic-204;Pafah1b3-203;Pafah1b3-202;Pafah1b3-201;Pafah1b3-204;Pafah1b3-207;Pafah1b3-205;Pafah1b3-206,Cic;Cic;Cic;Cic;Cic;Cic;Cic;Cic;Cic;Cic;Pafah1b3;Pafah1b3;Pafah1b3;Pafah1b3;Pafah1b3;Pafah1b3;Pafah1b3,0;0;0;9917;0;3464;0;1519;0;-244;3926;4536;5210;5106;5161;5145;5158,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,Exon,2,3,71722,ENSMUSG00000005442,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7272,cg27052685,-0.0000134,0.00000934,-1.438121574,0.151408293,loss,ns,-0.000004,0.0000159,-0.252099303,0.801131366,neg,ns,-0.019423954,0.004648272,-4.178747318,0.0000382,neg,ns,4.418348795,0.00041309,0.000159854,2.58417569,0.010218381,pos,ns,0.760555775,Gm5267,Gm5267_Intron,1,41919012,41919061,41919060,41919061,50,-,AAACAGAAAATACCTTTACCGAGGCAATCATTTGCCACGTGTGGAAAGCG,"Intron (Gm29260-201/Gm29260-201, intron 4 of 5)",1,42103289,42104333,1045,1,Gm5267-201,-184277,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,15,383634,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21564,cg09510409,0.00000376,0.00000637,0.59061986,0.555205482,gain,ns,0.00000273,0.0000108,0.252097963,0.801132401,pos,ns,0.008628131,0.003168106,2.723435032,0.006826855,pos,ns,2.165779327,-0.000324855,0.000108951,-2.981665447,0.003094083,neg,ns,0.887663005,Zfhx3,Zfhx3_Intron,8,108329688,108329737,108329736,108329737,50,-,AAATCTGTTCACCATAAAATGTTAATTATAAGTAAATTACAGCACAAACG,"Intron (Zfhx3-204/Zfhx3, intron 3 of 15)",8,107942644,108961630,1018987,1,Zfhx3-204,387044,Zfhx3-204;Zfhx3-207,Zfhx3;Zfhx3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,114,177,11906,ENSMUSG00000038872,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9945,cg16709039,0.0000975,0.00000561,17.37076104,1.12E-47,gain,yes,-0.0000024,0.00000954,-0.252017527,0.801194516,neg,ns,0.013641897,0.002794276,4.882087233,0.00000168,pos,ns,5.773792099,-0.000199552,0.0000961,-2.076617638,0.038660396,neg,ns,0.134289677,Maml3,Maml3_Intron,3,51701692,51701741,51701692,51701693,50,+,CGGCGTGATGGACATCACACACGACAGCCTGAGACAATCCAGGAATTCCC,"Intron (Maml3-201/Maml3, intron 1 of 3)",3,51685907,51796536,110630,2,Maml3-201,94795,Maml3-201;Maml3-202,Maml3;Maml3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,32,433586,ENSMUSG00000061143,mapped to different genes,3,51701433,51701790,358,*,358,25,0.636871508,0.691279833,0.069832402,1.94E-15,CpGisland,TRUE,U4,Pr-F
1648,cg25356878,0.0000974,0.0000116,8.393542422,1.70E-15,gain,yes,-0.00000497,0.0000197,-0.252008737,0.801201304,neg,ns,0.007773429,0.005774511,1.346162284,0.179233729,pos,ns,0.74658026,-0.000157295,0.000198585,-0.792081141,0.428919056,neg,ns,0.073066652,Zfp521,Zfp521_fiveUTR,18,13972657,13972706,13972705,13972706,50,-,GCCTGCACTCACACACAGACAGAGGGGCATGATTAAAAGGCGAGAGCGCG,Promoter (<=1kb),18,13687013,13972787,285775,2,Zfp521-201,81,Zfp521-201;Zfp521-204;Zfp521-203;Zfp521-202,Zfp521;Zfp521;Zfp521;Zfp521,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,81,225207,ENSMUSG00000024420,conserved gene but different region,18,13972697,13972999,303,*,303,56,0.808580858,1.154285714,0.184818482,2.05E-60,CpGisland,TRUE,U2,Pr-W
23850,cg03726556,0.0000335,0.00000509,6.587314876,1.92E-10,gain,yes,-0.00000218,0.00000865,-0.251924531,0.801266332,neg,ns,0.010173774,0.002534527,4.014071822,0.0000749,pos,ns,4.125502333,-0.000302671,0.0000872,-3.47250241,0.000588926,neg,ns,0.08772888,En1,En1_Promoter,1,120600441,120600490,120600441,120600442,50,-,CGCAGCTAAATAGGATATTGATAGTGTCCTAATTAGAATTTAATTAAGTA,Promoter (1-2kb),1,120602418,120607992,5575,1,En1-201,-1977,En1-201,En1,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,23,36,13798,ENSMUSG00000058665,conserved gene and region,1,120600297,120600444,148,*,148,15,0.540540541,1.38836773,0.101351351,7.56E-12,CpGisland,TRUE,U13,Hc-P
27771,cg13345581,-0.000001,0.00000801,-0.125222547,0.900428534,loss,ns,0.00000343,0.0000136,0.251924058,0.801266698,pos,ns,0.008869032,0.003987669,2.224114369,0.026860838,pos,ns,1.570880446,-0.000189389,0.000137136,-1.381037695,0.168262102,neg,ns,0.854982516,Rrp15,Rrp15_Intergenic_upstream,1,186782669,186782718,186782669,186782670,50,+,CGTGTTTTATTTTAGGGTCTATCTAGCCCACTCAGAAAATGTAATGGACC,Distal Intergenic,1,186720978,186749358,28381,2,Rrp15-201,-33311,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,11,67223,ENSMUSG00000001305,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22342,cg13382617,-0.00000876,0.00000477,-1.834442878,0.067546542,loss,ns,0.00000204,0.00000811,0.251801689,0.801361201,pos,ns,-0.001010633,0.002375931,-0.425362926,0.670867256,neg,ns,0.173363405,-0.0000235,0.0000817,-0.28819013,0.77339379,neg,ns,0.85788391,Brpf1,Brpf1_Exon,6,113318628,113318677,113318628,113318629,50,+,CGCCAGGCAGAAAAAATGGGCATTGACTTTGAGACGGGCATGCATATCCC,"Exon (Brpf1-204/Brpf1, exon 7 of 14)",6,113307137,113324857,17721,1,Brpf1-204,11491,Brpf1-204;Brpf1-209;Brpf1-203;Brpf1-202;Brpf1-201;Brpf1-210;Brpf1-208;Brpf1-205;Brpf1-207;Brpf1-206,Brpf1;Brpf1;Brpf1;Brpf1;Brpf1;Brpf1;Brpf1;Brpf1;Brpf1;Brpf1,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,16,78783,ENSMUSG00000001632,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27127,cg11167152,-0.000029,0.0000099,-2.932349587,0.003614599,loss,ns,0.00000423,0.0000168,0.251787257,0.801372346,pos,ns,-0.000777899,0.004926521,-0.157900267,0.87463819,neg,ns,0.058171563,0.0000115,0.000169423,0.067585298,0.946159328,pos,ns,0.874104855,Dhx35,Dhx35_Intergenic_downstream,2,158956985,158957034,158957033,158957034,50,+,GAAAGCAGCAATTAGCAAATTAGGTTAGCGGCGTGTTGCCGAGAGGCCCG,Distal Intergenic,2,158850629,158857368,6740,1,Dhx35-204,106356,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,14,14,71715,ENSMUSG00000027655,mapped to different genes,2,158957013,158957047,35,*,35,6,0.771428571,1.235294118,0.171428571,0.00000322,CpGisland,TRUE,U15,NS
23063,cg04866128,-0.0000017,0.00000399,-0.426377917,0.670128411,loss,ns,0.00000171,0.00000678,0.251778161,0.801379371,pos,ns,0.002358725,0.001985562,1.187938272,0.235767078,pos,ns,0.627516838,-0.0000773,0.0000683,-1.132629932,0.258244965,neg,ns,0.896606289,Taok3,Taok3_Exon,5,117250999,117251048,117250999,117251000,50,+,CGCCTCAAGCTACAGAAGGAGGTGGAGACGCATGCCAACAACTCGTCCAT,"Exon (Taok3-203/Taok3, exon 15 of 21)",5,117120129,117275217,155089,1,Taok3-203,130870,Taok3-203;Taok3-210;Taok3-201;Taok3-208;Taok3-202,Taok3;Taok3;Taok3;Taok3;Taok3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,20,330177,ENSMUSG00000061288,conserved gene and region,5,117250755,117251050,296,*,296,22,0.648648649,0.709368192,0.074324324,3.15E-14,CpGisland,TRUE,U10,Tr-S
17406,cg00109643,-0.00000199,0.00000137,-1.456415193,0.146289942,loss,ns,-0.000000585,0.00000233,-0.251710929,0.801431294,neg,ns,0.000404247,0.000681298,0.593347512,0.553381258,pos,ns,0.256975554,0.0000141,0.0000234,0.600467249,0.548633605,pos,ns,0.045877422,Picalm,Picalm_fiveUTR,7,90130232,90130281,90130232,90130233,50,-,CGGAAAGCTCCGAGGAGGAGCCTGGCGCCGCCATTTTCCTGCAGCTGCCT,Promoter (<=1kb),7,90130264,90132121,1858,1,Picalm-207,0,Picalm-205;Picalm-206;Picalm-215;Picalm-207;Picalm-208;Picalm-212;Picalm-204;Picalm-213;Picalm-201;Picalm-211,Picalm;Picalm;Picalm;Picalm;Picalm;Picalm;Picalm;Picalm;Picalm;Picalm,0;0;0;0;0;0;0;0;0;-1364,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,4,233489,ENSMUSG00000039361,conserved gene but different region,7,90129751,90130669,919,*,919,104,0.738846572,0.838915807,0.113166485,5.97E-85,CpGisland,TRUE,U1,Pr-A
26692,cg15496558,-0.0000125,0.00000294,-4.238123165,0.0000298,loss,ns,0.00000126,0.00000499,0.251637821,0.801487757,pos,ns,-0.002666346,0.001462713,-1.822876927,0.069285126,neg,ns,1.159359987,0.0000668,0.0000503,1.327439614,0.185340034,pos,ns,0.942492798,Camta1,Camta1_Intron,4,151170339,151170388,151170387,151170388,50,-,TTTGCAGCTTCATCAACGCTAAGTGGTCAATAAATCAGAGTGGCATGGCG,"Intron (Camta1-211/Camta1, intron 6 of 24)",4,150917322,151861669,944348,2,Camta1-211,691281,Camta1-211;Camta1-202;Camta1-201,Camta1;Camta1;Camta1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,22,100072,ENSMUSG00000014592,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11893,cg18235453,-0.0000032,0.00000113,-2.841293038,0.004790696,loss,ns,-0.000000482,0.00000192,-0.251535106,0.801567086,neg,ns,-0.000849616,0.000561155,-1.514049776,0.131032085,neg,ns,0.882622349,0.00000442,0.0000193,0.228852191,0.8191347,pos,ns,0.038435498,Csnk1a1,Csnk1a1_Exon,18,61556508,61556557,61556556,61556557,50,+,GGCAGTGAAGCTAGAATCTCAGAAGGCCAGGCATCCCCAGTTGCTGTACG,"Exon (Csnk1a1-204/Csnk1a1, exon 2 of 10)",18,61555274,61590061,34788,1,Csnk1a1-204,1234,Csnk1a1-204;Csnk1a1-206;Csnk1a1-201;Csnk1a1-207;Csnk1a1-202;Csnk1a1-205;Csnk1a1-210;Csnk1a1-208,Csnk1a1;Csnk1a1;Csnk1a1;Csnk1a1;Csnk1a1;Csnk1a1;Csnk1a1;Csnk1a1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,9,93687,ENSMUSG00000024576,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
21716,cg18111337,0.0000632,0.00000698,9.06436905,1.46E-17,gain,yes,0.00000298,0.0000119,0.2515285,0.801572188,pos,ns,0.010141645,0.003472553,2.920515258,0.003750872,pos,ns,2.425867813,-0.000141179,0.000119421,-1.182197015,0.238033527,neg,ns,0.165176854,Slitrk1,Slitrk1_Exon,14,108911430,108911479,108911478,108911479,50,+,GGACACCCTGCTGGTGTCTAGGTAGGAGTTGGAGTGCGTCCCGGTCTCCG,"Exon (Slitrk1-201/Slitrk1, exon 1 of 1)",14,108908800,108914158,5359,2,Slitrk1-201,2679,Slitrk1-201,Slitrk1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,17,76965,ENSMUSG00000075478,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2358,cg24104506,0.0000296,0.00000634,4.660590593,0.00000469,gain,ns,0.00000271,0.0000108,0.251273934,0.801768806,pos,ns,0.004560962,0.003157793,1.44435109,0.14965017,pos,ns,0.824922786,-0.0000397,0.000108596,-0.36585405,0.714723515,neg,ns,0.084141574,Tfap2d,Tfap2d_Intron,1,19107500,19107549,19107500,19107501,50,-,CGCATTTACTTAACTCTTCACGGGCTGTTGGGTAGGTTAACACCCTTCAA,"Intron (Tfap2d-201/Tfap2d, intron 2 of 7)",1,19103022,19166346,63325,1,Tfap2d-201,4478,Tfap2d-201;Tfap2d-202,Tfap2d;Tfap2d,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,23,226896,ENSMUSG00000042596,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24290,cg21685367,-0.0000155,0.00000797,-1.948134221,0.052301137,loss,ns,-0.0000034,0.0000135,-0.251166607,0.801851706,neg,ns,-0.009626578,0.003965553,-2.427549933,0.015770416,neg,ns,1.802156854,0.000117324,0.000136375,0.860302104,0.390287378,pos,ns,0.744405078,Pou3f1,Pou3f1_Intergenic_upstream,4,124506436,124506485,124506436,124506437,50,-,CGCTTTCCAAAGCCCTGCCCGGCACTCAGGGGCATTTCCTGCCTGCGCTA,Distal Intergenic,4,124656807,124660655,3849,1,Pou3f1-201,-150371,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,24,85,18991,ENSMUSG00000090125,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6226,cg25807763,-0.0000355,0.0000111,-3.196489368,0.001534591,loss,ns,-0.00000473,0.0000189,-0.251068219,0.801927703,neg,ns,0.003879261,0.005523115,0.702368278,0.482976566,pos,ns,0.31607394,-0.000336431,0.000189939,-1.771256225,0.077500582,neg,ns,0.772610105,Hs3st5,Hs3st5_Intergenic_upstream,10,36450814,36450863,36450814,36450815,50,-,CGCTTTGAGGAAATATAGATGAATTAATAATTGATGTGGCTGCTTTGCAG,Distal Intergenic,10,36506814,36833773,326960,1,Hs3st5-202,-56000,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,3,319415,ENSMUSG00000044499,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24219,cg00029553,-0.0000414,0.0000102,-4.072800109,0.000059,loss,ns,0.00000434,0.0000173,0.251043861,0.801946517,pos,ns,-0.00649387,0.005060856,-1.283156604,0.200395659,neg,ns,0.698111691,-0.000165781,0.000174042,-0.952533873,0.341568394,neg,ns,0.8399712,Fgf14,Fgf14_threeUTR,14,123979497,123979546,123979497,123979498,50,+,CGCTGGGCAAGGCAAATGTTACCATTACCAGTAAGCTTGTGATATGTATA,3' UTR,14,123977907,124677127,699221,2,Fgf14-202,697581,Fgf14-202;Fgf14-201;Itgbl1-201;Itgbl1-203;Itgbl1-202,Fgf14;Fgf14;Itgbl1;Itgbl1;Itgbl1,0;0;319526;319372;318073,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,9,14169,ENSMUSG00000025551,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11155,cg19450032,-0.0000139,0.00000646,-2.157891045,0.031704063,loss,ns,0.00000275,0.000011,0.250947146,0.802021224,pos,ns,-0.00263904,0.003216252,-0.820532812,0.412542925,neg,ns,0.384530856,0.0000728,0.000110607,0.658571217,0.510659972,pos,ns,0.776970819,Fhl1,Fhl1_Exon,X,56790589,56790638,56790589,56790590,50,+,CGTGGATTGCTACAAGAACTTTGTGGCCAAGAAGTGTGCTGGATGCAAGA,"Exon (Fhl1-201/Fhl1, exon 6 of 7)",20,56731787,56793346,61560,1,Fhl1-201,58802,Fhl1-201;Fhl1-203;Fhl1-206;Fhl1-205;Fhl1-204;Fhl1-202;Fhl1-210;Fhl1-207;Fhl1-208;Fhl1-209,Fhl1;Fhl1;Fhl1;Fhl1;Fhl1;Fhl1;Fhl1;Fhl1;Fhl1;Fhl1,0;0;0;0;0;0;10770;0;2864;2591,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,11,14199,ENSMUSG00000023092,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20161,cg17312313,-0.0000521,0.00000978,-5.328960505,0.00000019,loss,yes,0.00000417,0.0000166,0.250917765,0.80204392,pos,ns,-0.006072254,0.004869539,-1.246987391,0.213343432,neg,ns,0.670920723,-0.000136294,0.000167463,-0.813874735,0.416341418,neg,ns,0.631434815,Ubr7,Ubr7_Exon,12,102761928,102761977,102761928,102761929,50,+,CGTTGTGATTGTGGAAACAGCAAGTTTAAAAATTTGGAATGCAAATTACT,"Exon (Ubr7-201/Ubr7, exon 3 of 11)",12,102757967,102777707,19741,1,Ubr7-201,3961,Gm20604-201;Gm28051-201;Gm47042-201;Gon7-201;Gon7-202;Ubr7-201,Gm20604;Gm28051;Gm47042;Gon7;Gon7;Ubr7,-3256;-4163;2735;-4128;-4125;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,66622,ENSMUSG00000041712,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26100,cg15372488,-0.0000112,0.00000456,-2.457059788,0.014555498,loss,ns,-0.00000194,0.00000774,-0.250838078,0.802105475,neg,ns,0.002795342,0.002267126,1.232989342,0.218513911,pos,ns,0.660520909,-0.00018184,0.000078,-2.332287134,0.02032558,neg,ns,0.944221373,Sox5,Sox5_Intron,6,143904171,143904220,143904171,143904172,50,+,CGCCAGATTTCTCAGCAGGAATGCTAAGTGAAATCAATGTCTTGGATTTC,"Intron (Sox5-201/Sox5, intron 9 of 14)",6,143828425,144209480,381056,2,Sox5-201,305260,Sox5-201;Sox5-214;Sox5-205;Sox5-204;Sox5-202;Sox5-203;Sox5-209;Sox5-211;Sox5-206;Sox5-207,Sox5;Sox5;Sox5;Sox5;Sox5;Sox5;Sox5;Sox5;Sox5;Sox5,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,71,20678,ENSMUSG00000041540,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6830,cg08981285,-0.0000104,0.00000281,-3.705528411,0.000249758,loss,ns,0.00000119,0.00000477,0.250505499,0.802362395,pos,ns,-0.001793695,0.001396337,-1.284571871,0.199901007,neg,ns,0.699185017,-0.00000616,0.000048,-0.128351354,0.897954153,neg,ns,0.943798404,Clec2l,Clec2l_Intergenic_downstream,6,38687783,38687832,38687831,38687832,50,+,TATTATTAGTTTCCAAGACTAATATAAATTCACTCCATTTTTCTACAACG,Distal Intergenic,6,38663879,38677609,13731,1,Clec2l-202,23904,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,665180,ENSMUSG00000079598,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22726,cg06147321,0.0000597,0.0000168,3.560391151,0.000428391,gain,ns,0.00000713,0.0000285,0.250459843,0.802397666,pos,ns,0.012859377,0.008339027,1.542071694,0.124076319,pos,ns,0.9063111,0.000202899,0.000286778,0.707511403,0.479780277,pos,ns,0.718222078,Meis2,Meis2_Intergenic_downstream,2,115861363,115861412,115861411,115861412,50,+,TTTCTTAAATATACCCAAATCGGAACTCTTTACACTAAATAGTAAACCCG,Downstream (1-2kb),2,115864227,115868867,4641,2,Meis2-219,7455,Meis2-201;Meis2-203;Meis2-205;Meis2-206;Meis2-204;Meis2-202;Meis2-208;Meis2-219;Meis2-216;Meis2-218;Meis2-214;Meis2-207,Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2,0;0;0;0;0;0;0;0;0;0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,10,97,17536,ENSMUSG00000027210,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
21640,cg17776554,0.0000334,0.00000666,5.011322847,0.00000091,gain,yes,0.00000283,0.0000113,0.250427865,0.802422371,pos,ns,0.005739014,0.003314565,1.731453384,0.084365807,pos,ns,1.073833537,-0.000257978,0.000113988,-2.263209004,0.024314149,neg,ns,0.082566108,Zfhx3,Zfhx3_fiveUTR,8,108714805,108714854,108714805,108714806,50,-,CGGGGCTGTGAGTTTCAAATTAACCTTCCGCTTTGTTGCTGTGTAATGTG,5' UTR,8,107942644,108961630,1018987,1,Zfhx3-204,772161,Zfhx3-204;Zfhx3-202;Zfhx3-201,Zfhx3;Zfhx3;Zfhx3,0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,11,177,11906,ENSMUSG00000038872,conserved gene but different region,8,108714612,108715434,823,*,823,88,0.725394897,0.812839506,0.106925881,1.42E-69,CpGisland,TRUE,U1,Pr-A
18876,cg23388626,-0.00000459,0.00000363,-1.264378616,0.207043953,loss,ns,0.00000154,0.00000616,0.250412321,0.80243438,pos,ns,-0.000240938,0.001805123,-0.133474458,0.893904767,neg,ns,0.048708747,-0.0000377,0.0000621,-0.607544325,0.543934513,neg,ns,0.833633097,Hdac7,Hdac7_Exon,15,97801148,97801197,97801148,97801149,50,+,CGGAGCTGGAGGGGCCGTCTGCACCACTGTCTTCCACTCAGGGCCCCTAG,"Exon (Hdac7-213/Hdac7, exon 14 of 23)",15,97792664,97831494,38831,2,Hdac7-201,30297,Hdac7-201;Hdac7-203;Hdac7-202;Hdac7-208;Hdac7-206;Hdac7-204;Hdac7-205;Hdac7-207;Hdac7-213;Hdac7-212;Hdac7-210;Hdac7-209,Hdac7;Hdac7;Hdac7;Hdac7;Hdac7;Hdac7;Hdac7;Hdac7;Hdac7;Hdac7;Hdac7;Hdac7,0;0;0;0;0;0;0;0;0;0;0;6787,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,6,56233,ENSMUSG00000022475,conserved gene and region,15,97801068,97801164,97,*,97,8,0.701030928,0.721860465,0.082474227,0.00000927,CpGisland,TRUE,U11,Tr-P
9161,cg26072973,-0.0000187,0.00000471,-3.955691174,0.0000946,loss,ns,0.00000201,0.00000801,0.250396166,0.802446861,pos,ns,-0.00237888,0.002346629,-1.013743322,0.311495806,neg,ns,0.506547797,-0.000019,0.0000807,-0.23544649,0.814017667,neg,ns,0.909114736,Rnf144b,Rnf144b_Intergenic_downstream,13,47310725,47310774,47310725,47310726,50,+,CGGAGGTGCCCCAGGAAGCTGTTTCCTCTGAATAGTTAAATGGCTGCCTC,Distal Intergenic,13,47193825,47246417,52593,1,Rnf144b-202,116900,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,218215,ENSMUSG00000038068,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24954,cg22204849,-0.00000787,0.00000198,-3.969380322,0.0000896,loss,ns,-0.000000843,0.00000337,-0.250362697,0.802472717,neg,ns,-0.00065945,0.000986541,-0.668446104,0.504346286,neg,ns,0.297271173,0.00000677,0.0000339,0.199691813,0.841852541,pos,ns,0.947855117,Fgfr2,Fgfr2_Exon,7,130198432,130198481,130198480,130198481,50,-,CAACCATGCAGAGTGAAAGGATATCCCAATAGAATTACCCGCCAAGCACG,"Exon (Fgfr2-207/Fgfr2, exon 6 of 16)",7,130162451,130266263,103813,2,Fgfr2-211,67782,Fgfr2-211;Fgfr2-217;Fgfr2-207;Fgfr2-226;Fgfr2-215;Fgfr2-201;Fgfr2-202;Fgfr2-203;Fgfr2-204;Fgfr2-205;Fgfr2-206;Fgfr2-208;Fgfr2-209;Fgfr2-210;Fgfr2-212;Fgfr2-213;Fgfr2-214;Fgfr2-216;Fgfr2-222;Fgfr2-225;Fgfr2-218,Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2;Fgfr2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,79,14183,ENSMUSG00000030849,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11600,cg13130690,-0.0000246,0.00000948,-2.600329582,0.009759556,loss,ns,-0.00000403,0.0000161,-0.250257425,0.802554048,neg,ns,0.02071626,0.004716386,4.39240163,0.0000154,pos,ns,4.812309813,-0.001056716,0.000162196,-6.515049471,2.94E-10,neg,yes,0.796985139,Arih1,Arih1_Exon,9,59436771,59436820,59436771,59436772,50,+,CGAGTTAGGGTAGTTCAAGTAGCAGATCTGACAAGGCATATCCTGTGCTG,"Exon (Arih1-207/Arih1, exon 3 of 14)",9,59388258,59486614,98357,2,Arih1-207,49794,Arih1-207;Arih1-201;Arih1-202;Arih1-204;Arih1-205,Arih1;Arih1;Arih1;Arih1;Arih1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,13,23806,ENSMUSG00000025234,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4650,cg11802294,-0.00000841,0.00000312,-2.697837757,0.007361276,loss,ns,-0.00000133,0.0000053,-0.250157396,0.80263133,neg,ns,0.000920561,0.00155222,0.593061304,0.553572533,pos,ns,0.256825467,-0.00010726,0.0000534,-2.009346527,0.045366856,neg,ns,0.947454692,Mecom,Mecom_Intron,3,30060188,30060237,30060236,30060237,50,-,CACTCCGACAGGAATCTTCTCATTTATTTACGAATAGGTTAAGACCTTCG,"Intron (Mecom-212/Mecom, intron 1 of 15)",3,29951299,30509733,558435,2,Mecom-212,449496,Mecom-212;Mecom-203;Mecom-210;Mecom-213;Mecom-207;Mecom-208;Mecom-211,Mecom;Mecom;Mecom;Mecom;Mecom;Mecom;Mecom,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,80,14013,ENSMUSG00000027684,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2115,cg18164445,0.0000954,0.00000861,11.09010679,2.71E-24,gain,yes,-0.00000366,0.0000146,-0.25008032,0.80269088,neg,ns,0.001263057,0.004283422,0.294871012,0.768289791,pos,ns,0.114474937,0.00000239,0.000147307,0.016202817,0.987083011,pos,ns,0.513952054,Skida1,Skida1_Promoter,2,18051717,18051766,18051765,18051766,50,-,ATCAGCACACGTTGCATATCCGGGGTCTTCTCCAGGCACATTGGGGGTCG,Promoter (2-3kb),2,18044083,18049051,4969,2,Skida1-202,-2715,Mllt10-201;Skida1-202;Skida1-201;Skida1-203;Skida1-204,Mllt10;Skida1;Skida1;Skida1;Skida1,0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,12,31,72668,ENSMUSG00000054074,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15613,cg21279152,-0.0000296,0.00000578,-5.117086197,0.000000545,loss,yes,-0.00000246,0.00000982,-0.250074934,0.802695042,neg,ns,-0.000347399,0.00287673,-0.120761831,0.903957917,neg,ns,0.043851787,-0.00000984,0.0000989,-0.099454027,0.92084207,neg,ns,0.960146506,Nfib,Nfib_threeUTR,4,82295097,82295146,82295145,82295146,50,-,ATAAAGGTATAACTGTCTAAAAAATCCATGATGTCACACATTTTTCTTCG,3' UTR,4,82290173,82505308,215136,2,Nfib-201,210162,Nfib-201;Nfib-203;Nfib-202;Nfib-205;Nfib-206;Nfib-204,Nfib;Nfib;Nfib;Nfib;Nfib;Nfib,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,11,66,18028,ENSMUSG00000008575,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13219,cg08191552,0.0000394,0.0000149,2.643447344,0.008623893,gain,ns,-0.00000633,0.0000253,-0.249987639,0.802762488,neg,ns,-0.017201054,0.007421992,-2.317578965,0.021123168,neg,ns,1.675240952,0.000589559,0.000255242,2.309807004,0.021555585,pos,ns,0.693886493,Fgf11,Fgf11_Exon,11,69799377,69799426,69799425,69799426,50,-,TTCATGGCCATGTAGTGACCCAGCTTGGCGCTCTGGATGGTGACCACACG,"Exon (Fgf11-201/Fgf11, exon 3 of 6)",11,69796068,69801716,5649,2,Fgf11-201,2290,Chrnb1-201;Chrnb1-203;Fgf11-201;Fgf11-202;Tmem102-201,Chrnb1;Chrnb1;Fgf11;Fgf11;Tmem102,-3434;-3472;0;0;6198,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,14166,ENSMUSG00000042826,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
8992,cg14603406,-0.000000369,0.00000209,-0.17664411,0.859903291,loss,ns,0.000000887,0.00000355,0.249947828,0.802793248,pos,ns,0.001604078,0.001039228,1.543528959,0.123722663,pos,ns,0.907550741,-0.0000571,0.0000357,-1.598894458,0.110862738,neg,ns,0.069845755,Trim8,Trim8_Exon,19,46502448,46502497,46502448,46502449,50,+,CGGAGAATTGGAAGAACTGCTTCGAGGAGGAGCTCATCTGCCCTATCTGC,Promoter (<=1kb),19,46501702,46516848,15147,1,Trim8-201,746,Trim8-201,Trim8,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,15,21,93679,ENSMUSG00000025034,conserved gene and region,19,46501691,46502449,759,*,759,94,0.748353096,0.884615385,0.123847167,4.99E-81,CpGisland,TRUE,U1,Pr-A
19117,cg24606460,0.0000224,0.0000035,6.401947877,5.67E-10,gain,yes,0.00000149,0.00000595,0.249804391,0.802904076,pos,ns,0.006328043,0.001742529,3.631528404,0.000329559,pos,ns,3.482067248,-0.00015247,0.0000599,-2.544322645,0.011433885,neg,ns,0.10214033,Gm10320,Gm10320_Intergenic_upstream,13,98503747,98503796,98503795,98503796,50,-,GGGGCGCAGGCGATGGTAAGCTCTGTTTATATAATCCATTTCTTCACACG,Distal Intergenic,13,98489348,98492001,2654,2,Gm10320-201,-11795,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,7,101055909,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
14107,cg05094722,0.0000963,0.0000103,9.307583585,2.47E-18,gain,yes,0.00000439,0.0000176,0.249717134,0.802971498,pos,ns,0.012308608,0.005147349,2.391251808,0.017387113,pos,ns,1.759772512,-0.000184339,0.000177017,-1.041365791,0.298517275,neg,ns,0.042590025,Hoxd11,Hoxd11_Intron,2,74682224,74682273,74682224,74682225,50,-,CGTCACGTGACATAATTACCACCAGAATCAATCAAGATGAATTGCACGTC,"Intron (Hoxd11-201/Hoxd11, intron 1 of 1)",2,74679557,74687016,7460,1,Hoxd11-201,2667,Hoxd11-201;Hoxd11-202;Hoxd12-201,Hoxd11;Hoxd11;Hoxd12,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,14,15431,ENSMUSG00000042499,conserved gene and region,2,74681954,74682230,277,*,277,35,0.722021661,0.986166209,0.126353791,8.09E-31,CpGisland,TRUE,NA,NRS
22688,cg24383002,0.0000131,0.00000519,2.518181861,0.01229965,gain,ns,0.0000022,0.00000881,0.249686432,0.802995222,pos,ns,0.003418659,0.00258152,1.324281135,0.186385221,pos,ns,0.729588527,-0.0000915,0.0000888,-1.030631446,0.303517101,neg,ns,0.047507094,Maf,Maf_Exon,8,115705962,115706011,115706010,115706011,50,+,GACTGGGCATAGCCGCGGTTTTTCAGGGTCCGCCTCTTCTGCTTCAGCCG,"Exon (Maf-201/Maf, exon 1 of 3)",8,115682942,115707096,24155,2,Maf-201,1085,Maf-201;Maf-202,Maf;Maf,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,23,17132,ENSMUSG00000055435,conserved gene and region,8,115705919,115706789,871,*,871,113,0.732491389,0.967968135,0.129735936,6.29E-100,CpGisland,TRUE,NA,NRS
22348,cg13354982,-0.00000186,0.000000773,-2.398773862,0.01704057,loss,ns,0.000000328,0.00000131,0.249656059,0.803018691,pos,ns,0.000323898,0.000384978,0.841341507,0.400805167,pos,ns,0.397066688,-0.0000161,0.0000132,-1.214574024,0.22545296,neg,ns,0.985023057,Brpf1,Brpf1_threeUTR,6,113324635,113324684,113324683,113324684,50,+,TATCGGAGAATTTAAATTATTCTCATTTGTAACTGCGTTTCCGGGTCGCG,3' UTR,6,113307137,113324857,17721,1,Brpf1-204,17498,Brpf1-204;Brpf1-209;Brpf1-203;Brpf1-202;Brpf1-201;Brpf1-210;Brpf1-208;Brpf1-207;Brpf1-206;Ogg1-201;Ogg1-202;Ogg1-203;Ogg1-205;Ogg1-207;Ogg1-206,Brpf1;Brpf1;Brpf1;Brpf1;Brpf1;Brpf1;Brpf1;Brpf1;Brpf1;Ogg1;Ogg1;Ogg1;Ogg1;Ogg1;Ogg1,0;0;0;0;0;0;0;0;0;-2288;-2301;-2315;-2324;-2329;-2427,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,16,78783,ENSMUSG00000001632,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6752,cg03866914,0.00000764,0.00000193,3.96596203,0.0000908,gain,ns,0.000000817,0.00000327,0.249624729,0.8030429,pos,ns,0.002098859,0.000959208,2.188116753,0.029407294,pos,ns,1.531544938,-0.0000124,0.000033,-0.375829658,0.70730059,neg,ns,0.064835202,Lhx2,Lhx2_Intron,2,38347887,38347936,38347935,38347936,50,-,ATTTAATGGTATATCAGCGTCAACTATCGCTTCCTCTGCTGGTACACACG,"Intron (Lhx2-203/Lhx2, intron 1 of 4)",2,38339281,38369199,29919,1,Lhx2-203,8606,Lhx2-203;Lhx2-204;Lhx2-202;Lhx2-201;Lhx2-207;Lhx2-205,Lhx2;Lhx2;Lhx2;Lhx2;Lhx2;Lhx2,0;0;0;0;-3832;-4596,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,33,16870,ENSMUSG00000000247,mapped to different genes,2,38347822,38348178,357,*,357,27,0.518207283,1.126841244,0.075630252,1.55E-17,CpGisland,TRUE,U3,Pr-B
5436,cg00908965,-0.00000805,0.00000292,-2.754587944,0.006223841,loss,ns,0.00000124,0.00000496,0.249615531,0.803050007,pos,ns,-0.0000142,0.001454081,-0.009778151,0.992204578,neg,ns,0.003398774,-0.000101564,0.00005,-2.031045485,0.04310337,neg,ns,0.946165026,Cnr1,Cnr1_Exon,4,33944252,33944301,33944252,33944253,50,+,CGACAGGTACATATCCATTCACAGGCCCCTGGCCTATAAGAGGATTGTCA,"Exon (Cnr1-201/Cnr1, exon 2 of 2)",4,33924632,33948831,24200,1,Cnr1-201,19620,Cnr1-201;Cnr1-202,Cnr1;Cnr1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,12801,ENSMUSG00000044288,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18118,cg12580491,0.0000147,0.00000483,3.041581692,0.002554405,gain,ns,0.00000205,0.00000821,0.249570013,0.803085179,pos,ns,0.006526549,0.002404417,2.714400411,0.007011343,pos,ns,2.154198776,-0.000166861,0.0000827,-2.017962929,0.044456279,neg,ns,0.901913519,Gnao1,Gnao1_threeUTR,8,93967010,93967059,93967010,93967011,50,+,CGACATCATCATTGCCAACAACCTCCGGGGCTGCGGCTTGTACTGACCTC,3' UTR,8,93810838,93969388,158551,1,Gnao1-201,156172,Amfr-201;Gnao1-201;Gnao1-203;Gnao1-204;Gnao1-208;Gnao1-210;Gnao1-211;Gnao1-212,Amfr;Gnao1;Gnao1;Gnao1;Gnao1;Gnao1;Gnao1;Gnao1,45783;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,5,13,14681,ENSMUSG00000031748,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6771,cg12545183,-0.000019,0.0000106,-1.792427924,0.074039412,loss,ns,-0.0000045,0.0000181,-0.249385467,0.803227785,neg,ns,-0.009237862,0.005289027,-1.746608847,0.081695637,neg,ns,1.087801135,0.000035,0.000181889,0.192465487,0.847503621,pos,ns,0.511437838,Lhx2,Lhx2_Intergenic_downstream,2,38395310,38395359,38395358,38395359,50,-,TCCCGGAGAAGCTCTCTACAAAGTGTGCCAAGTGGCAGCTGTCAGGGCCG,Distal Intergenic,2,38353802,38360089,6288,1,Lhx2-206,41557,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,33,16870,ENSMUSG00000000247,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15361,cg18860117,-0.0000215,0.0000119,-1.812936436,0.070808731,loss,ns,0.00000503,0.0000202,0.249342377,0.803261084,pos,ns,-0.002196496,0.005912161,-0.371521637,0.710502841,neg,ns,0.148434181,-0.000100449,0.000203319,-0.494047809,0.621622295,neg,ns,0.712761852,Gm46388,Gm46388_Intergenic_downstream,13,80514303,80514352,80514351,80514352,50,+,TGCAAAGTAAAGTGGATTCACAGTTAGAGTCAGCACCAGTGCACAGGTCG,Distal Intergenic,13,80493009,80493484,476,1,Gm46388-201,21294,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,11,108168047,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12273,cg11793825,0.000015,0.00000292,5.122949668,0.00000053,gain,yes,-0.00000124,0.00000496,-0.249244143,0.803336996,neg,ns,0.005380206,0.001454354,3.699378742,0.000255624,pos,ns,3.592399018,-0.0000926,0.00005,-1.850740197,0.065158104,neg,ns,0.036724188,Otud7a,Otud7a_threeUTR,7,63758838,63758887,63758838,63758839,50,+,CGTTCCTAATGGTGCCTGAACCTACACTGACGCCACTCAGGTAGTAGACG,3' UTR,7,63444751,63759028,314278,1,Otud7a-201,314087,Otud7a-201;Otud7a-204;Otud7a-203,Otud7a;Otud7a;Otud7a,0;108023;4126,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,4,170711,ENSMUSG00000033510,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
449,cg07548773,0.0000412,0.00000467,8.83370911,7.67E-17,gain,yes,0.00000198,0.00000793,0.24923895,0.803341009,pos,ns,0.003537087,0.002323492,1.522315476,0.128949436,pos,ns,0.889580553,0.0000365,0.0000799,0.456645882,0.648245384,pos,ns,0.084086304,Dync1i1,Dync1i1_Exon,6,6006173,6006222,6006221,6006222,50,-,GACACTTTGTGAATGTGCAAAGTTTTTAATTAGGCTCTCTAGACAGCCCG,"Exon (Dync1i1-206/Dync1i1, exon 1 of 3)",6,5725639,6028039,302401,1,Dync1i1-203,280534,Dync1i1-203;Dync1i1-202;Dync1i1-204;Dync1i1-201;Dync1i1-206,Dync1i1;Dync1i1;Dync1i1;Dync1i1;Dync1i1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,9,13426,ENSMUSG00000029757,conserved gene but different region,6,6006221,6006480,260,*,260,19,0.615384615,0.771995624,0.073076923,3.18E-12,CpGisland,TRUE,U2,Pr-W
23681,cg05070816,0.00000917,0.0000065,1.41150738,0.159097938,gain,ns,0.00000275,0.000011,0.249193653,0.803376014,pos,ns,0.004361842,0.003234358,1.348595729,0.178451241,pos,ns,0.748480428,-0.000188308,0.000111229,-1.692967417,0.091466296,neg,ns,0.931016033,Zfp131,Zfp131_Exon,13,119775925,119775974,119775925,119775926,50,+,CGAAGATATCGTTTATTGCATATTTCACACTTGAAACTCTCAGTGGAGTG,"Exon (Zfp131-201/Zfp131, exon 5 of 7)",13,119765187,119790805,25619,2,Zfp131-201,14831,Zfp131-201;Zfp131-202;Zfp131-203;Zfp131-206;Zfp131-204;Zfp131-207;Zfp131-209;Zfp131-208,Zfp131;Zfp131;Zfp131;Zfp131;Zfp131;Zfp131;Zfp131;Zfp131,0;0;0;0;0;0;0;2246,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,72465,ENSMUSG00000094870,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12007,cg01667686,-0.00000031,0.00000221,-0.140502995,0.888353835,loss,ns,-0.000000935,0.00000375,-0.249083494,0.803461146,neg,ns,-0.001091701,0.001099893,-0.992552012,0.321702414,neg,ns,0.49254568,0.0000537,0.0000378,1.419094337,0.156876181,pos,ns,0.952339739,Ncor1,Ncor1_Exon,11,62333728,62333777,62333728,62333729,50,-,CGGGTGATGATCACGTCTATGAAGTTAGCTGCAGTAATGGTAGTCTTCCC,"Exon (Ncor1-204/Ncor1, exon 36 of 45)",11,62316426,62438515,122090,2,Ncor1-204,104738,Gm12276-201;Ncor1-204;Ncor1-201;Ncor1-213;Ncor1-214;Ncor1-202;Ncor1-205;Ncor1-209;Ncor1-223;Ncor1-219,Gm12276;Ncor1;Ncor1;Ncor1;Ncor1;Ncor1;Ncor1;Ncor1;Ncor1;Ncor1,2307;0;0;0;0;0;0;0;0;-2785,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,10,20185,ENSMUSG00000018501,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2649,cg26010091,0.0000264,0.00000775,3.412247377,0.000729817,gain,ns,0.00000328,0.0000132,0.248906409,0.803598003,pos,ns,0.0160783,0.003855679,4.170031188,0.0000396,pos,ns,4.402611891,-0.000541749,0.000132596,-4.085699461,0.000056,neg,ns,0.701613348,Syn1,Syn1_threeUTR,X,20861514,20861563,20861514,20861515,50,+,CGGATGGTCTCAGCTTTCACCTCGTCCTGGCTAAGGCTGGGCCTGGGCGG,3' UTR,20,20860511,20921004,60494,2,Syn1-202,59441,Araf-207;Araf-201;Araf-206;Syn1-202;Syn1-201,Araf;Araf;Araf;Syn1;Syn1,0;0;3791;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,4,20964,ENSMUSG00000037217,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8440,cg08268848,-0.0000714,0.0000191,-3.734056483,0.00022417,loss,ns,-0.00000808,0.0000325,-0.248823329,0.803662212,neg,ns,-0.013471779,0.009511615,-1.416350314,0.157676994,neg,ns,0.802231669,0.000290031,0.000327104,0.886664551,0.375946859,pos,ns,0.364769736,Zeb2,Zeb2_Intron,2,45114101,45114150,45114101,45114102,50,-,CGCTTCTGTCGTAATCCAATCAGGTTACATAGGTCCTAAACAAGAAAGAT,"Intron (Zeb2-212/Zeb2, intron 1 of 10)",2,44983632,45117395,133764,2,Zeb2-212,3245,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219;Zeb2-211;Zeb2-210;Zeb2-205;Zeb2-223;Zeb2-217;Zeb2-225;Zeb2-204;Zeb2-206;Zeb2-230,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;-4025;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
24868,cg01328716,-0.0000564,0.00000964,-5.853926488,1.22E-08,loss,yes,-0.00000407,0.0000164,-0.248819322,0.803665308,neg,ns,-0.003824907,0.004796751,-0.797395417,0.425831754,neg,ns,0.370761957,-0.00013047,0.00016496,-0.790917291,0.429596931,neg,ns,0.886219504,Rnf19b,Rnf19b_Exon,4,129082774,129082823,129082822,129082823,50,+,GGAAATTTTCCCCAAAGACACAGCCAGTCTTGGTGCAATTAGTGACAACG,"Exon (Rnf19b-206/Rnf19b, exon 8 of 9)",4,129058271,129084526,26256,1,Rnf19b-206,24503,Rnf19b-206;Rnf19b-201;Rnf19b-205;Rnf19b-202;Rnf19b-203;Rnf19b-204,Rnf19b;Rnf19b;Rnf19b;Rnf19b;Rnf19b;Rnf19b,0;0;0;0;0;-1062,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,75234,ENSMUSG00000028793,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3196,cg14576603,0.0000309,0.0000122,2.536357716,0.011691735,gain,ns,-0.00000514,0.0000207,-0.248355695,0.80402365,neg,ns,0.001562035,0.00606745,0.257445065,0.797006022,pos,ns,0.098538397,0.00018644,0.000208659,0.893512687,0.372275806,pos,ns,0.440163069,Gm46443,Gm46443_Intergenic_upstream,14,23185386,23185435,23185386,23185387,50,+,CGCCCTAGGTAAAGATTAGCTGCTCTTGTCAATTTAATTCAGCTTCAAAC,Distal Intergenic,14,23321144,23321507,364,1,Gm46443-201,-135709,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,12,12,108168141,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18680,cg04449703,-0.000037,0.00000674,-5.493376478,8.23E-08,loss,yes,-0.00000285,0.0000115,-0.248347228,0.804030195,neg,ns,-0.003641149,0.003356682,-1.084746651,0.278876751,neg,ns,0.55458769,-0.000187433,0.000115436,-1.623698012,0.105456638,neg,ns,0.821492449,Tenm4,Tenm4_Exon,7,96729337,96729386,96729385,96729386,50,+,TGCTCACCACAGCCATGCACCTGTTTGGCCTAAACTGGCACCTGCAGCCG,"Exon (Tenm4-201/Tenm4, exon 11 of 33)",7,96171246,96908569,737324,1,Tenm4-201,558091,Tenm4-201;Tenm4-203;Tenm4-202;Tenm4-207,Tenm4;Tenm4;Tenm4;Tenm4,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,17,26,23966,ENSMUSG00000048078,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6763,cg15437942,0.000101106,0.0000085,11.90135117,3.74E-27,gain,yes,-0.00000358,0.0000144,-0.248310589,0.804058516,neg,ns,0.007760136,0.004228221,1.835319322,0.067416279,pos,ns,1.171235222,0.0000303,0.000145408,0.208582924,0.834910824,pos,ns,0.15211432,Lhx2,Lhx2_Intron,2,38357359,38357408,38357359,38357360,50,-,CGACAAGAGCTCGAAACCCGATGGGTTAATAACAGATCACGAGTAAATTA,"Intron (Lhx2-203/Lhx2, intron 3 of 4)",2,38339281,38369199,29919,1,Lhx2-203,18078,Lhx2-203;Lhx2-204;Lhx2-202;Lhx2-201;Lhx2-207;Lhx2-205;Lhx2-206,Lhx2;Lhx2;Lhx2;Lhx2;Lhx2;Lhx2;Lhx2,0;0;0;0;5591;4827;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,33,16870,ENSMUSG00000000247,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
17194,cg03909491,-0.0000128,0.00000794,-1.615606478,0.107196653,loss,ns,-0.00000335,0.0000135,-0.248264741,0.804093955,neg,ns,-0.009991625,0.003949654,-2.529747129,0.011909664,neg,ns,1.924100475,0.0001093,0.000135828,0.804691317,0.421614533,pos,ns,0.829865942,Gm6625,Gm6625_Promoter,8,89153120,89153169,89153120,89153121,50,-,CGTGTGGGCAATGATATTATCCAAATATTATTAAAACTTTGAACCCTGTC,Promoter (6-7kb),8,89146787,89147058,272,2,Gm6625-201,-6111,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,7,625801,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21519,cg27468475,0.00000189,0.00000127,1.49103389,0.136969424,gain,ns,0.000000535,0.00000216,0.248230693,0.804120273,pos,ns,0.001138698,0.000631785,1.802350508,0.072461511,pos,ns,1.139892614,-0.0000191,0.0000217,-0.877749751,0.380759296,neg,ns,0.029745166,Bsn,Bsn_threeUTR,9,108096106,108096155,108096106,108096107,50,-,CGAGTTCTCACAGAGCACAGAAGGACAGCACACAATTCACAAGGTCATGT,3' UTR,9,108096022,108190384,94363,2,Bsn-201,94229,Apeh-201;Apeh-206;Apeh-209;Apeh-208;Apeh-204;Apeh-203;Bsn-201;Bsn-202,Apeh;Apeh;Apeh;Apeh;Apeh;Apeh;Bsn;Bsn,-1665;-1500;-1640;-1630;-2086;-1627;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,8,12217,ENSMUSG00000032589,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
26383,cg21988123,0.0000691,0.00000705,9.799173027,6.31E-20,gain,yes,-0.00000297,0.000012,-0.248157315,0.804176993,neg,ns,0.00900016,0.003509692,2.564373047,0.010807107,pos,ns,1.966290565,-0.000075,0.000120698,-0.621042487,0.535028031,neg,ns,0.135324291,Nkx2-2,Nkx2-2_Exon,2,147188259,147188308,147188259,147188260,50,-,CGGACCCGGGCAAACACAAATACAAACCGATTGCTAAGCTGCGGACAATG,"Exon (6430503K07Rik-201/6430503K07Rik-201, exon 3 of 3)",2,147186305,147194243,7939,2,Nkx2-2-202,5935,Nkx2-2-203;Nkx2-2-201;Nkx2-2-202;Nkx2-2-204,Nkx2-2;Nkx2-2;Nkx2-2;Nkx2-2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,15,30,18088,ENSMUSG00000027434,conserved gene but different region,2,147188041,147188404,364,*,364,26,0.585164835,0.836633663,0.071428571,2.81E-16,CpGisland,TRUE,U13,Hc-P
2716,cg04467576,-0.00000432,0.00000182,-2.377225292,0.018049936,loss,ns,-0.000000766,0.00000309,-0.248098936,0.80422212,neg,ns,-0.001382195,0.000904284,-1.528495711,0.127409201,neg,ns,0.894799208,0.00000114,0.0000311,0.036668831,0.970772662,pos,ns,0.961246483,Klhl14,Klhl14_Intron,18,21573251,21573300,21573299,21573300,50,-,GTTTTTAAATTAAGGTCCTGCTGATTTAATGCCTCCTCCAAATGTATACG,"Intron (Klhl14-201/Klhl14, intron 2 of 7)",18,21550377,21652368,101992,2,Klhl14-201,79068,Klhl14-201;Klhl14-202,Klhl14;Klhl14,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,38,225266,ENSMUSG00000042514,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26143,cg04110052,-0.000000277,0.000000464,-0.597700688,0.550476028,loss,ns,0.000000195,0.000000788,0.2480502,0.804259794,pos,ns,-0.000294147,0.000230868,-1.274090267,0.203585757,neg,ns,0.691252609,0.0000104,0.00000794,1.309920926,0.191192445,pos,ns,0.990380258,Lmo4,Lmo4_Exon,3,144193981,144194030,144194029,144194030,50,-,AAACTGCCATTGATGTAGTGAAACCGATCTCCCGGGACCAGGCGATTCCG,"Exon (Lmo4-203/Lmo4, exon 4 of 5)",3,144188530,144202396,13867,2,Lmo4-203,8366,Lmo4-203;Lmo4-201;Lmo4-202;Lmo4-207;Lmo4-206;Lmo4-208,Lmo4;Lmo4;Lmo4;Lmo4;Lmo4;Lmo4,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,18,54,16911,ENSMUSG00000028266,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4066,cg15104878,-0.000083,0.0000159,-5.228942296,0.000000314,loss,yes,0.00000669,0.000027,0.248046102,0.804262961,pos,ns,-0.019729584,0.007902526,-2.496617471,0.013057274,neg,ns,1.88414749,0.000161301,0.000271767,0.593524538,0.553262967,pos,ns,0.64668732,Gm45647,Gm45647_Intergenic_upstream,8,26689946,26689995,26689994,26689995,50,-,ATGGTAAAAATAGTGTGAAGTTTCTTGGCCCTGTGCTAAATCCCCTTTCG,Distal Intergenic,8,26780315,26780509,195,1,Gm45647-201,-90369,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,46,62,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
843,cg17165193,0.000129639,0.0000103,12.56876553,1.47E-29,gain,yes,-0.00000435,0.0000175,-0.248028781,0.804276351,neg,ns,0.010443096,0.005133571,2.034275071,0.042774822,pos,ns,1.36881179,0.0000298,0.000176543,0.169074719,0.865848139,pos,ns,0.250336969,Nxph1,Nxph1_Intron,6,8956236,8956285,8956236,8956237,50,+,CGTTGTAAGGATGTCACTCAATTTATTGTGAAAGTCGAATGAATTACGTT,"Intron (Nxph1-202/Nxph1, intron 2 of 2)",6,8948614,9249032,300419,1,Nxph1-202,7622,Nxph1-203;Nxph1-202;Nxph1-201,Nxph1;Nxph1;Nxph1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,12,18231,ENSMUSG00000046178,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
26681,cg14134157,-0.00000231,0.00000475,-0.4867942,0.626748174,loss,ns,0.000002,0.00000807,0.247955224,0.804333212,pos,ns,-0.005751674,0.002363784,-2.433248625,0.015529047,neg,ns,1.808855207,0.000183382,0.0000813,2.255894825,0.024773962,pos,ns,0.941789491,Hmcn1,Hmcn1_Exon,1,150656677,150656726,150656725,150656726,50,-,AGAGGCAAATGCTCACCATATACATTGAGGTGGAAATTTTTATCATCCCG,"Exon (Hmcn1-201/Hmcn1, exon 61 of 107)",1,150562524,150993051,430528,2,Hmcn1-201,336325,Hmcn1-201;Hmcn1-202,Hmcn1;Hmcn1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,545370,ENSMUSG00000066842,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9515,cg23176198,0.00000495,0.00000884,0.559979037,0.575898148,gain,ns,-0.00000372,0.000015,-0.247927737,0.80435446,neg,ns,0.005365105,0.004397797,1.219952987,0.223409971,pos,ns,0.650897449,-0.000345593,0.00015124,-2.285064333,0.022984202,neg,ns,0.840758506,Lrfn2,Lrfn2_Exon,17,49070755,49070804,49070755,49070756,50,+,CGCCTCTCATCACCCAGCACACACACAAGTTGCTGGTTCTGGAGGGCCAG,"Exon (Lrfn2-201/Lrfn2, exon 2 of 3)",17,48932379,49097588,165210,1,Lrfn2-201,138376,Lrfn2-201,Lrfn2,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,70530,ENSMUSG00000040490,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5062,cg18359063,-0.00000242,0.00000123,-1.969599756,0.049774344,loss,ns,0.000000517,0.00000208,0.247888716,0.804384625,pos,ns,0.000461869,0.000610511,0.75652765,0.449907447,pos,ns,0.346876818,0.00000464,0.000021,0.221186044,0.825093193,pos,ns,0.028084293,Fosl2,Fosl2_Promoter,5,32135460,32135509,32135460,32135461,50,+,CGCAAATGACCATCTTTGGCAACGTGCGCCAATGGAACAGACCAAGGGCG,Promoter (<=1kb),5,32135801,32157842,22042,1,Fosl2-201,-292,Fosl2-201;Fosl2-202,Fosl2;Fosl2,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,8,14284,ENSMUSG00000029135,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
22268,cg06391468,0.000065,0.0000101,6.412395813,5.34E-10,gain,yes,0.00000427,0.0000172,0.247879525,0.80439173,pos,ns,0.012134501,0.005045871,2.404837728,0.016765654,pos,ns,1.775579509,-0.000258536,0.000173527,-1.489885705,0.137270992,neg,ns,0.066682338,Sox9,Sox9_fiveUTR,11,112782582,112782631,112782582,112782583,50,-,CGTATGAATCTCCTGGACCCCTTCATGAAGATGACCGACGAGCAGGAGAA,Promoter (<=1kb),11,112782224,112787760,5537,1,Sox9-201,358,Sox9-201,Sox9,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,7,20682,ENSMUSG00000000567,mapped to different genes,11,112782319,112783103,785,*,785,78,0.689171975,0.841186976,0.099363057,4.94E-59,CpGisland,TRUE,U3,Pr-B
12840,cg16364414,-0.000000239,0.00000324,-0.073744532,0.941261224,loss,ns,0.00000136,0.0000055,0.247873663,0.804396262,pos,ns,-0.000441259,0.001610838,-0.273931207,0.784319922,neg,ns,0.105506754,0.000158684,0.0000554,2.864514066,0.004461587,pos,ns,0.921738321,Tln2,Tln2_Exon,9,67272670,67272719,67272718,67272719,50,-,ACTGGTCATTTGTGAAGCCAGTCCTCCCAACTCCTCCGGGTTAGTAACCG,"Exon (Tln2-202/Tln2, exon 44 of 58)",9,67217087,67559703,342617,2,Tln2-202,286984,Tln2-202;Tln2-209;Tln2-204;Tln2-207;Tln2-205;Tln2-201,Tln2;Tln2;Tln2;Tln2;Tln2;Tln2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,70549,ENSMUSG00000052698,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18794,cg26151168,-0.00000173,0.0000049,-0.352829293,0.724456201,loss,ns,-0.00000206,0.00000832,-0.247871379,0.804398028,neg,ns,-0.000901645,0.002437158,-0.369957709,0.711666619,neg,ns,0.147723404,0.0000349,0.0000838,0.416082979,0.677637188,pos,ns,0.877101928,Gk2,Gk2_Intron,5,97430079,97430128,97430079,97430080,50,+,CGTGTAAACAATTAATGGTTGTTAAGCATGGCAGTGTATATTATGACAAA,"Intron (4930467D21Rik-202/4930467D21Rik-202, intron 2 of 4)",5,97455142,97457021,1880,2,Gk2-201,26893,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,13,14626,ENSMUSG00000050553,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4754,cg10095870,-0.00000472,0.00000362,-1.302050065,0.193865886,loss,ns,-0.00000153,0.00000615,-0.247852501,0.804412621,neg,ns,-0.002643803,0.001802624,-1.466641006,0.143487421,neg,ns,0.843186171,0.000118645,0.000062,1.913868614,0.056557599,pos,ns,0.069965737,Ier5l,Ier5l_Intergenic_downstream,2,30470739,30470788,30470787,30470788,50,+,GGCACATTCTCCCACTCTGAGGTCATTCCGTAGGTGGTCAGAGGGGAGCG,Downstream (<1kb),2,30471537,30474219,2683,2,Ier5l-201,3431,Ier5l-201,Ier5l,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,6,13,72500,ENSMUSG00000089762,conserved gene and region,2,30470658,30470883,226,*,226,15,0.646017699,0.664184953,0.066371681,3.62E-09,CpGisland,TRUE,U3,Pr-B
23192,cg00056578,0.0000297,0.0000124,2.395923573,0.01717116,gain,ns,-0.00000522,0.0000211,-0.247712473,0.804520872,neg,ns,0.012979928,0.006170623,2.103503439,0.036227278,pos,ns,1.440964292,-0.000227639,0.000212207,-1.072718409,0.284231826,neg,ns,0.419369373,Ksr2,Ksr2_Exon,5,117414855,117414904,117414855,117414856,50,-,CGAGGAGCAGCAGCCTCTGAGTTTGCAAAAAGCCTTACAGCAGTGCGAAC,Promoter (<=1kb),5,117414000,117555942,141943,1,Ksr2-201,855,Ksr2-201;Ksr2-202,Ksr2;Ksr2,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,333050,ENSMUSG00000061578,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
19592,cg18598262,-0.0000135,0.00000472,-2.863173874,0.004480007,loss,ns,0.00000198,0.00000802,0.24753925,0.80465479,pos,ns,-0.001380419,0.00234872,-0.587732474,0.557139747,neg,ns,0.254035858,-0.0000492,0.0000808,-0.609078647,0.542918401,neg,ns,0.885499581,Klf12,Klf12_Exon,14,99987460,99987509,99987460,99987461,50,-,CGTAGATCCAGTTTCATTAACGCTATCTAAGGTCACATTTGGCAGGTCAT,"Exon (Klf12-205/Klf12, exon 5 of 8)",14,99870632,100284679,414048,2,Klf12-205,297170,Klf12-205;Klf12-201,Klf12;Klf12,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,11,16597,ENSMUSG00000072294,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12703,cg00713411,0.0000288,0.0000067,4.300504728,0.0000229,gain,ns,-0.00000281,0.0000114,-0.247455568,0.804719486,neg,ns,0.004100573,0.003332671,1.230416432,0.219474031,pos,ns,0.658616859,-0.000211256,0.00011461,-1.843256253,0.066246071,neg,ns,0.079043236,Pnma2,Pnma2_Promoter,14,66910633,66910682,66910633,66910634,50,-,CGATGGTCTTGTTCTCCGAGGACCCTTCCACCGGGCAGAACATGCCACAG,Promoter (<=1kb),14,66911170,66921023,9854,1,Pnma2-201,-537,Pnma2-201;Pnma2-202;Pnma2-204;Pnma2-203,Pnma2;Pnma2;Pnma2;Pnma2,-488;-526;-560;-3634,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,1,239157,ENSMUSG00000046204,mapped to different genes,14,66910475,66910831,357,*,357,30,0.641456583,0.819559229,0.084033613,8.65E-21,CpGisland,TRUE,U13,Hc-P
26955,cg15981030,0.0001,0.00000739,13.53018544,4.26E-33,gain,yes,-0.00000311,0.0000126,-0.247432158,0.804737585,neg,ns,-0.003014997,0.00367802,-0.819733529,0.41299783,neg,ns,0.38405223,-0.000214515,0.000126487,-1.695944707,0.090900304,neg,ns,0.643956893,Trp53inp2,Trp53inp2_Exon,2,155385942,155385991,155385942,155385943,50,+,CGCGCCCTCCTTGATGGACGAGAGCTGGTTTGTTACCCCTCCCGCCTGTT,"Exon (Trp53inp2-203/Trp53inp2, exon 3 of 3)",2,155381059,155386057,4999,1,Trp53inp2-203,4883,Ncoa6-201;Ncoa6-203;Ncoa6-207;Ncoa6-208;Trp53inp2-203;Trp53inp2-201;Trp53inp2-205;Trp53inp2-204;Trp53inp2-202,Ncoa6;Ncoa6;Ncoa6;Ncoa6;Trp53inp2;Trp53inp2;Trp53inp2;Trp53inp2;Trp53inp2,0;0;10835;17570;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,68728,ENSMUSG00000038375,mapped to different genes,2,155385900,155386090,191,*,191,12,0.659685864,0.599215686,0.062827225,0.000000358,CpGisland,TRUE,U10,Tr-S
7897,cg25841427,-0.0000082,0.0000053,-1.546559074,0.122989832,loss,ns,0.00000223,0.00000901,0.247354746,0.804797436,pos,ns,0.000105017,0.002639436,0.039787779,0.968287931,pos,ns,0.013995481,0.0000464,0.0000908,0.511138083,0.609618211,pos,ns,0.867088509,Pax5,Pax5_Intron,4,44623282,44623331,44623330,44623331,50,-,TAGGCGCAGTAAGGACATTCAATGTCATTTACATAATGGCATTTCTATCG,"Intron (Pax5-201/Pax5, intron 6 of 9)",4,44524757,44710487,185731,2,Pax5-201,87156,Pax5-201;Pax5-202;Pax5-203;Pax5-204;Pax5-205;Pax5-207;Pax5-206;Pax5-209;Pax5-210;Pax5-212;Pax5-213;Pax5-214;Pax5-215;Pax5-220;Pax5-211,Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,19,45,18507,ENSMUSG00000014030,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5467,cg22285267,-0.00000288,0.000001,-2.868041495,0.004413435,loss,ns,0.000000421,0.0000017,0.247283164,0.804852779,pos,ns,-0.0000647,0.000499263,-0.12961675,0.89695371,neg,ns,0.047229969,-0.0000321,0.0000172,-1.868688964,0.062609069,neg,ns,0.017399668,Fxr1,Fxr1_fiveUTR,3,34020089,34020138,34020137,34020138,50,-,CCCAGCGGCCTTTGCGGTTCCAACATGGCGGAGCTGACGGTGGAGGTTCG,Promoter (<=1kb),3,34020098,34069337,49240,1,Fxr1-202,0,Fxr1-201;Fxr1-202;Fxr1-207;Fxr1-206;Fxr1-204;Fxr1-208,Fxr1;Fxr1;Fxr1;Fxr1;Fxr1;Fxr1,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,4,14359,ENSMUSG00000027680,conserved gene and region,3,34019743,34020819,1077,*,1077,144,0.767873723,0.913776647,0.133704735,2.21E-129,CpGisland,TRUE,U1,Pr-A
22635,cg06785646,-0.0000105,0.0000106,-0.994377709,0.320814543,loss,ns,0.00000444,0.000018,0.247207825,0.804911029,pos,ns,-0.009880201,0.005262775,-1.877374846,0.061405598,neg,ns,1.211792034,0.00037063,0.000180986,2.047832684,0.041418711,pos,ns,0.761628141,BC052040,BC052040_Intron,2,115509522,115509571,115509570,115509571,50,-,ATTGTAAATTACCTGTGACATCTCATTAATCCTCTTTTTCCTCACAAACG,"Intron (3110099E03Rik-202/3110099E03Rik-202, intron 1 of 2)",2,115581716,115778768,197053,1,BC052040-203,-72194,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,37,49,399568,ENSMUSG00000040282,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20907,cg24010297,0.0000438,0.00000596,7.341470592,1.87E-12,gain,yes,0.0000025,0.0000101,0.247178513,0.804933692,pos,ns,0.001461422,0.002968538,0.492303705,0.622853124,pos,ns,0.205614353,0.0000965,0.000102088,0.944988217,0.345400838,pos,ns,0.100279846,Pax6,Pax6_Intron,2,105686849,105686898,105686849,105686850,50,+,CGGTAACAGTATGCGAAATATCTGGTACAAAGGATGCTTCTGTCACTCGC,"Intron (Pax6-206/Pax6, intron 7 of 12)",2,105668900,105697364,28465,1,Pax6-206,17949,Pax6-206;Pax6-207;Pax6-210;Pax6-214;Pax6-208;Pax6-202;Pax6-205;Pax6-225;Pax6-204;Pax6-201;Pax6-203;Pax6-224;Pax6-219;Pax6-221;Pax6-213;Pax6-211;Pax6-222;Pax6-212;Pax6-215;Pax6-223;Pax6-209;Pax6-216,Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,78,18508,ENSMUSG00000027168,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
19810,cg16375215,-0.0000163,0.0000117,-1.388747956,0.165906343,loss,ns,0.00000493,0.0000199,0.247080491,0.805009482,pos,ns,-0.012962595,0.005843073,-2.218455208,0.027248028,neg,ns,1.564664917,0.000546834,0.000200943,2.721342386,0.006869193,pos,ns,0.596799086,Pdzrn3,Pdzrn3_fiveUTR,6,101199171,101199220,101199219,101199220,50,-,CTCCCTCCTCTGAGTGACTCTGGCAGCTGGATTGTGGTCCAATGCACACG,Promoter (<=1kb),6,101151341,101199186,47846,2,Pdzrn3-205,0,Pdzrn3-201;Pdzrn3-205;Pdzrn3-202;Pdzrn3-203;Pdzrn3-204,Pdzrn3;Pdzrn3;Pdzrn3;Pdzrn3;Pdzrn3,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,4,55983,ENSMUSG00000035357,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2823,cg16333451,0.000032,0.0000086,3.716381098,0.000239715,gain,ns,-0.00000361,0.0000146,-0.246977841,0.805088852,neg,ns,0.009224569,0.004278958,2.155797896,0.031868688,pos,ns,1.496635821,-0.000161049,0.000147153,-1.09442896,0.274616512,neg,ns,0.509758345,Comtd1,Comtd1_Intergenic_upstream,14,21903928,21903977,21903928,21903929,50,-,CGCTGTTGTGTATATTTCTCTGTCAGCACCGCGGACCCAGCTGAACTGGC,Distal Intergenic,14,21845855,21848977,3123,2,Comtd1-202,-55000,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,13,69156,ENSMUSG00000021773,mapped to different genes,14,21903863,21904078,216,*,216,12,0.532407407,0.786885246,0.055555556,0.00000131,CpGisland,TRUE,U9,En-Pp
19331,cg15810562,-0.00000248,0.00000121,-2.041370448,0.042060469,loss,ns,-0.000000509,0.00000206,-0.246968586,0.805096008,neg,ns,0.000837959,0.00060434,1.38656734,0.166570056,pos,ns,0.778403068,-0.0000428,0.0000208,-2.059772095,0.040254928,neg,ns,0.969489222,Foxp1,Foxp1_Intron,6,99017459,99017508,99017507,99017508,50,+,TTAAAATGACAGGCTGTCTTGGCCAAGGTTACACAAATTGTATTCAAGCG,"Intron (Foxp1-206/Foxp1, intron 4 of 17)",6,98925338,99266515,341178,2,Foxp1-206,249007,Foxp1-206;Foxp1-204;Foxp1-220;Foxp1-230;Foxp1-225;Foxp1-201;Foxp1-205;Foxp1-207;Foxp1-208;Foxp1-226;Foxp1-228;Foxp1-221;Foxp1-222;Foxp1-210;Foxp1-214;Foxp1-209;Foxp1-203;Foxp1-218;Foxp1-231;Foxp1-215,Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,87,108655,ENSMUSG00000030067,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26952,cg10751692,-0.000000542,0.00000376,-0.144100502,0.88551474,loss,ns,0.00000158,0.00000639,0.246916581,0.80513622,pos,ns,0.005756923,0.001872304,3.074780233,0.00229404,pos,ns,2.63939904,-0.0000976,0.0000644,-1.516050315,0.130525635,neg,ns,0.900253302,Xpr1,Xpr1_threeUTR,1,155280591,155280640,155280639,155280640,50,-,ACTGACAAAAAATTTAAAAACCAATGTCCGGTTTCAACCAGTCAAAACCG,3' UTR,1,155275701,155417329,141629,2,Xpr1-201,136689,Xpr1-201;Xpr1-203;Xpr1-205;Xpr1-202,Xpr1;Xpr1;Xpr1;Xpr1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,2,19775,ENSMUSG00000026469,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5406,cg07443727,-0.0000143,0.00000255,-5.616560996,4.33E-08,loss,yes,-0.00000107,0.00000434,-0.246914347,0.805137947,neg,ns,-0.000177722,0.001271141,-0.139812754,0.888898728,neg,ns,0.051147715,-0.0000603,0.0000437,-1.380343747,0.168475359,neg,ns,0.932772219,Ttc14,Ttc14_threeUTR,3,33807805,33807854,33807805,33807806,50,+,CGTGTGGTTTTTTTCGATATCTGGGTTCTAAAAGAAATCTTTGGAATTAA,3' UTR,3,33799832,33814860,15029,1,Ttc14-201,7973,Ccdc39-201;Ttc14-201;Ttc14-204;Ttc14-211;Ttc14-208;Ttc14-209;Ttc14-203;Ttc14-202;Ttc14-206;Ttc14-205;Ttc14-207,Ccdc39;Ttc14;Ttc14;Ttc14;Ttc14;Ttc14;Ttc14;Ttc14;Ttc14;Ttc14;Ttc14,36447;0;7614;0;0;0;0;0;7542;0;5265,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,1,67120,ENSMUSG00000027677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10828,cg13899234,-0.000000762,0.00000162,-0.470248291,0.638508294,loss,ns,0.000000679,0.00000275,0.246674408,0.805323481,pos,ns,-0.001363683,0.000806288,-1.691311574,0.091782306,neg,ns,1.037241036,0.0000391,0.0000277,1.408930079,0.159858092,pos,ns,0.958169157,Fam193b,Fam193b_Exon,13,55550224,55550273,55550224,55550225,50,+,CGCATTGTGGCCGAAGAACTCACAGTAGCAGCAGTCACAGAACTTCCCAT,"Exon (Fam193b-206/Fam193b, exon 5 of 9)",13,55539316,55571100,31785,2,Fam193b-206,20827,Fam193b-206;Fam193b-201;Fam193b-204;Fam193b-203;Fam193b-207,Fam193b;Fam193b;Fam193b;Fam193b;Fam193b,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,11,212483,ENSMUSG00000021495,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18309,cg14551953,0.0000806,0.00000995,8.106056592,1.22E-14,gain,yes,-0.00000417,0.0000169,-0.246650199,0.805342201,neg,ns,0.017026789,0.004950717,3.439256969,0.000663162,pos,ns,3.178380345,-0.000278514,0.000170255,-1.635868369,0.102881996,neg,ns,0.120837593,Gm48316,Gm48316_Intergenic_upstream,13,94707078,94707127,94707126,94707127,50,-,TTCGCAGAGGCTACAGGTCGAAAATAGAGCACGGTGCCAGCTTCACCTCG,Distal Intergenic,13,94752270,94752593,324,1,Gm48316-201,-45192,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,36,42,,NA,mapped to different genes,13,94707063,94707220,158,*,158,11,0.5,1.114102564,0.069620253,0.000000471,CpGisland,TRUE,U13,Hc-P
25158,cg22174405,0.00000927,0.00000343,2.706335935,0.007179808,gain,ns,-0.00000144,0.00000582,-0.246624165,0.805362333,neg,ns,0.0000827,0.001705251,0.048468084,0.961374411,pos,ns,0.017107442,-0.0000558,0.0000586,-0.952042965,0.341816892,neg,ns,0.933695365,Plekha6,Plekha6_Intron,1,133196319,133196368,133196367,133196368,50,+,CTGGCTGATTGACTCTAATGCGGGTGAACATTTATTTACCCCAGCAGCCG,"Intron (Plekha6-212/Plekha6, intron 3 of 9)",1,133164210,133272280,108071,1,Plekha6-212,32109,Plekha6-212;Plekha6-204,Plekha6;Plekha6,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,7,240753,ENSMUSG00000041757,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1306,cg21148362,0.0000247,0.00000544,4.547365878,0.0000078,gain,ns,0.00000228,0.00000924,0.246580604,0.805396019,pos,ns,0.0000656,0.002708074,0.024227973,0.980686354,pos,ns,0.008469868,0.000147757,0.0000931,1.586555105,0.113632901,pos,ns,0.107571553,Fezf2,Fezf2_Intergenic_downstream,14,12340371,12340420,12340419,12340420,50,-,ACAAAAAAACGAGGACGCTCTCCTTTCAGGAAATGGAATTCTAATGTACG,Distal Intergenic,14,12342094,12345844,3751,2,Fezf2-203,5473,Fezf2-203;Fezf2-201;Fezf2-202,Fezf2;Fezf2;Fezf2,0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,21,45,54713,ENSMUSG00000021743,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
11917,cg15068147,0.00000891,0.00000541,1.647304518,0.100508693,gain,ns,0.00000227,0.00000919,0.246507614,0.805452462,pos,ns,-0.000908308,0.002692011,-0.337408695,0.736037173,neg,ns,0.133100252,-0.000110813,0.0000926,-1.196972688,0.232231746,neg,ns,0.882523219,Tank,Tank_Intergenic_downstream,2,61662612,61662661,61662660,61662661,50,-,CATTACACCAAATGCAGCTCTACGGGCGATCAATCAATGGGTAGTCTTCG,Distal Intergenic,2,61643831,61649977,6147,1,Tank-211,18830,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,17,21353,ENSMUSG00000064289,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8517,cg15784689,-0.0000793,0.00000715,-11.08011927,2.93E-24,loss,yes,0.000003,0.0000122,0.246457102,0.805491524,pos,ns,0.006440731,0.003560622,1.808878134,0.071438644,pos,ns,1.146066796,-0.000392602,0.000122449,-3.206240546,0.001485147,neg,ns,0.890763285,Gm12161,Gm12161_Intergenic_downstream,11,45275254,45275303,45275302,45275303,50,-,ATCATGGGTTATACCTTCATTGTAATAAAACTCCACTGTGTGTCCAAGCG,Distal Intergenic,11,45280594,45280954,361,2,Gm12161-201,5700,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,10,382510,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4326,cg03812924,-0.000013,0.00000353,-3.691681696,0.000263148,loss,ns,0.00000148,0.000006,0.246447965,0.80549859,pos,ns,0.000208626,0.001757811,0.118685139,0.90560168,pos,ns,0.04306278,0.0000287,0.0000605,0.47497821,0.635136962,pos,ns,0.852755561,Samd4b,Samd4b_threeUTR,7,28401570,28401619,28401570,28401571,50,+,CGCTGGGCTGTGGGTCCCGTCAGATGGTGGAGGTTTTGTCTGTCCCATCT,3' UTR,7,28399522,28436191,36670,2,Samd4b-204,34572,Paf1-201;Paf1-202;Paf1-207;Paf1-205;Paf1-208;Samd4b-204;Samd4b-201;Samd4b-203;Samd4b-202,Paf1;Paf1;Paf1;Paf1;Paf1;Samd4b;Samd4b;Samd4b;Samd4b,8619;8529;5745;4919;3136;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,9,11,233033,ENSMUSG00000109336,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3383,cg06336711,0.0000487,0.00000771,6.324733319,8.85E-10,gain,yes,0.00000322,0.0000131,0.246040305,0.805813857,pos,ns,0.006090148,0.003836176,1.587557022,0.113405948,pos,ns,0.945364167,-0.0000561,0.000131926,-0.425149754,0.671022472,neg,ns,0.405037105,Gm11892,Gm11892_Intergenic_upstream,4,23983648,23983697,23983648,23983649,50,-,CGCCTCGTGAGCTCCTTGACACAAAAGGAAAGGGTATTAAAGATCTAAAG,Distal Intergenic,4,24238100,24239301,1202,1,Gm11892-201,-254452,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,16,16,664973,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16224,cg01340118,-0.00000521,0.00000172,-3.039895774,0.002568325,loss,ns,0.000000717,0.00000291,0.24594656,0.80588636,pos,ns,-0.001396184,0.000853589,-1.635662739,0.102925076,neg,ns,0.987478803,-0.000019,0.0000294,-0.646625197,0.518352999,neg,ns,0.965419917,Bnc2,Bnc2_Intron,4,84615990,84616039,84616038,84616039,50,+,GCCCTGGCACTCGAGTGGGCAAACTGCTCTTTGCAAATGTCATGTGTCCG,"Intron (Bnc2-201/Bnc2, intron 1 of 7)",4,84275095,84675034,399940,2,Bnc2-201,58995,Bnc2-201;Bnc2-202;Bnc2-214;Bnc2-215;Bnc2-206;Bnc2-211;Bnc2-217;Bnc2-207;Bnc2-203;Bnc2-209;Bnc2-204;Bnc2-210,Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,91,242509,ENSMUSG00000028487,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5165,cg16032050,0.00000838,0.00000409,2.04953355,0.041251191,gain,ns,-0.00000171,0.00000695,-0.245903788,0.805919441,neg,ns,-0.002305242,0.002034843,-1.132884606,0.258138152,neg,ns,0.588147803,0.000113426,0.00007,1.620872675,0.106061626,pos,ns,0.082474613,Prrxl1,Prrxl1_Promoter,14,32598349,32598398,32598349,32598350,50,-,CGCAGCATTAGAATGTTTATAAAATATTCAATTTATGTAGTCTGTCCAAG,Promoter (1-2kb),14,32599407,32649204,49798,1,Prrxl1-203,-1058,Prrxl1-203;Prrxl1-204;Prrxl1-202;Prrxl1-201;Prrxl1-205,Prrxl1;Prrxl1;Prrxl1;Prrxl1;Prrxl1,0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,14,23,107751,ENSMUSG00000041730,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
12830,cg23505734,0.000203711,0.0000213,9.57579473,3.38E-19,gain,yes,0.00000889,0.0000361,0.245899652,0.80592264,pos,ns,0.082786499,0.010588036,7.818871921,8.40E-14,pos,yes,13.07560334,-0.00092714,0.000364122,-2.546235774,0.011372711,neg,ns,0.761178934,Rsrc1,Rsrc1_Intron,3,67265337,67265386,67265385,67265386,50,-,GCCCTGACAGTCTGATAGACTGTGACACAGATTCTGTGGCAAAACAGACG,"Intron (Rsrc1-206/Rsrc1, intron 6 of 9)",3,66981390,67356559,375170,1,Rsrc1-206,283947,Rsrc1-206;Rsrc1-203;Rsrc1-202;Rsrc1-201;Rsrc1-209;Rsrc1-205,Rsrc1;Rsrc1;Rsrc1;Rsrc1;Rsrc1;Rsrc1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,37,66880,ENSMUSG00000034544,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16329,cg26110440,-0.00000412,0.00000145,-2.834443034,0.004891913,loss,ns,0.000000608,0.00000247,0.24589658,0.805925016,pos,ns,-0.002136196,0.000724115,-2.95007829,0.003418904,neg,ns,2.466113086,0.0000338,0.0000249,1.35655475,0.17590981,pos,ns,0.970705721,Exoc6b,Exoc6b_Intron,6,84747002,84747051,84747002,84747003,50,+,CGCCTTTAACTAACCATGGACAGGGAGATTGGCAGACGGATGACAGGGAA,"Intron (Exoc6b-203/Exoc6b, intron 19 of 21)",6,84618487,85069513,451027,2,Exoc6b-203,322462,Exoc6b-203,Exoc6b,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,8,75914,ENSMUSG00000033769,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25423,cg23351411,-0.000131844,0.0000192,-6.859785625,3.75E-11,loss,yes,-0.00000803,0.0000327,-0.245821645,0.805982974,neg,ns,0.028192717,0.009565909,2.947207274,0.003449923,pos,ns,2.462190609,-0.001635471,0.000328971,-4.971478676,0.0000011,neg,yes,0.457066819,Gm5904,Gm5904_Intergenic_upstream,7,136406521,136406570,136406521,136406522,50,-,CGGGCAGGTTGTAGACAGATCTGGGTCTTAGCCTGCCACCCCAAGGGCCC,Distal Intergenic,7,136657209,136658073,865,1,Gm5904-201,-250688,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,14,17,546009,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4791,cg12813088,0.00000128,0.00000299,0.427370027,0.669406531,gain,ns,-0.00000125,0.00000508,-0.245606192,0.806149618,neg,ns,-0.002106519,0.001486903,-1.416716125,0.157570056,neg,ns,0.802526309,0.0000367,0.0000511,0.718061625,0.473260086,pos,ns,0.93073805,Kmt2b,Kmt2b_Exon,7,30583395,30583444,30583443,30583444,50,+,AGGACCAGGGGAGGCCTCAGGAGATTCATCGGAATCCCAGGGCAACAGCG,"Exon (Kmt2b-201/Kmt2b, exon 8 of 37)",7,30568858,30588717,19860,2,Kmt2b-201,5273,Kmt2b-201;Kmt2b-202;Kmt2b-206;Kmt2b-204;Kmt2b-203,Kmt2b;Kmt2b;Kmt2b;Kmt2b;Kmt2b,0;0;0;-4401;1630,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,7,75410,ENSMUSG00000006307,conserved gene and region,7,30583201,30583460,260,*,260,19,0.673076923,0.645414163,0.073076923,3.18E-12,CpGisland,TRUE,U10,Tr-S
26332,cg03149156,0.0000197,0.0000053,3.711799099,0.000243908,gain,ns,-0.00000221,0.00000901,-0.245602815,0.80615223,neg,ns,-0.003615341,0.00263962,-1.369644597,0.171789164,neg,ns,0.765004234,0.0000376,0.0000908,0.414299335,0.67894142,pos,ns,0.864396934,Kiz,Kiz_Intergenic_upstream,2,146823796,146823845,146823844,146823845,50,-,GGGGTCCGGCCTAATTCCCACCTTCTCCAGAGTCAAGAGCATAATGTGCG,Distal Intergenic,2,146855864,146970097,114234,1,Kiz-201,-32068,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,29,228730,ENSMUSG00000074749,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19448,cg11979243,0.0000108,0.00000909,1.189201053,0.235270641,gain,ns,0.00000379,0.0000154,0.24533977,0.806355697,pos,ns,0.00723767,0.004523421,1.600043547,0.110607521,pos,ns,0.956215343,-0.000429882,0.00015556,-2.763448344,0.006061365,neg,ns,0.647493619,Gm12689,Gm12689_Intergenic_downstream,4,99333428,99333477,99333428,99333429,50,-,CGTAATCAGCTCACTATGAAAACAGGGCTTCCAGAGGGCACCAAAATCAT,Distal Intergenic,4,99295900,99297258,1359,1,Gm12689-201,37577,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,12,26,100137011,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25023,cg06811295,0.0000152,0.00000309,4.93536086,0.00000131,gain,yes,0.00000129,0.00000525,0.245298552,0.806387581,pos,ns,0.003302357,0.001537113,2.148415686,0.032455187,pos,ns,1.488715889,-0.0000511,0.0000529,-0.96740942,0.334093523,neg,ns,0.158313712,Fgfr2,Fgfr2_Intron,7,131552426,131552475,131552474,131552475,50,+,CTGACACCATGATTAAAGCTGACCATTTGTAATGTGTCTCGACCCTGCCG,"Intron (Hmx2-202/Hmx2, intron 1 of 2)",7,130162451,133123350,2960900,2,Fgfr2-217,1570875,Fgfr2-217;Hmx2-202;Hmx2-201,Fgfr2;Hmx2;Hmx2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,58,79,14183,ENSMUSG00000030849,mapped to different genes,7,131552465,131552790,326,*,326,26,0.641104295,0.778328742,0.079754601,1.69E-17,CpGisland,TRUE,U13,Hc-P
17011,cg02837897,-0.00000348,0.00000412,-0.843523498,0.399586137,loss,ns,0.00000172,0.000007,0.245288885,0.806395058,pos,ns,-0.002700128,0.002050604,-1.31674781,0.188895766,neg,ns,0.723777777,0.0000213,0.0000705,0.302515789,0.762461777,pos,ns,0.89061939,Zfp423,Zfp423_Exon,8,87859305,87859354,87859353,87859354,50,-,GGTGGTCCGTCAGGTCTGCCAGAGACTCGAAGTCCTGCTGACAGTGATCG,"Exon (Zfp423-202/Zfp423, exon 3 of 8)",8,87661810,87959595,297786,2,Zfp423-202,100241,Zfp423-202;Zfp423-201;Zfp423-207;Zfp423-205;Zfp423-204,Zfp423;Zfp423;Zfp423;Zfp423;Zfp423,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,53,94187,ENSMUSG00000045333,conserved gene and region,8,87859242,87859455,214,*,214,14,0.551401869,0.876792508,0.065420561,1.65E-08,CpGisland,TRUE,U15,NS
3827,cg07414245,0.000024,0.00000953,2.515569943,0.012389283,gain,ns,-0.00000397,0.0000162,-0.245209548,0.80645643,neg,ns,0.001870694,0.004741946,0.394499258,0.693483737,pos,ns,0.158963719,-0.000147642,0.000163075,-0.905364192,0.365975584,neg,ns,0.138923708,Fgfr1,Fgfr1_Intron,8,25543604,25543653,25543652,25543653,50,+,TAATGATCTTTCCATTACAGAACCCAGACCAGGAAGTGCATGACAGGTCG,"Intron (Fgfr1-212/Fgfr1, intron 3 of 3)",8,25513654,25555568,41915,1,Fgfr1-212,29950,Fgfr1-212;Fgfr1-201;Fgfr1-214;Fgfr1-215;Fgfr1-203;Fgfr1-202;Fgfr1-211;Fgfr1-217;Fgfr1-205;Fgfr1-218;Fgfr1-213,Fgfr1;Fgfr1;Fgfr1;Fgfr1;Fgfr1;Fgfr1;Fgfr1;Fgfr1;Fgfr1;Fgfr1;Fgfr1,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,8,14182,ENSMUSG00000031565,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19707,cg06786167,0.00000375,0.00000689,0.5438479,0.586937049,gain,ns,0.00000287,0.0000117,0.245111685,0.806532133,pos,ns,0.005928303,0.00342758,1.729588668,0.08469919,pos,ns,1.072120741,-0.00014605,0.000117874,-1.239029573,0.216271832,neg,ns,0.859504841,Dlg3,Dlg3_Exon,X,100775914,100775963,100775962,100775963,50,+,GCCCAGCTGACCTGAGTGGGGAGCTGCGCAGGGGAGACCGGATCTTATCG,"Exon (Dlg3-201/Dlg3, exon 8 of 19)",20,100767722,100818406,50685,1,Dlg3-201,8192,Dlg3-201;Dlg3-204;Dlg3-202;Dlg3-206;Dlg3-203;Dlg3-208,Dlg3;Dlg3;Dlg3;Dlg3;Dlg3;Dlg3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,11,53310,ENSMUSG00000000881,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14541,cg17226713,-0.0000222,0.00001,-2.208223168,0.027960383,loss,ns,0.00000418,0.0000171,0.245023536,0.806600324,pos,ns,-0.006830983,0.005001286,-1.365845466,0.172977572,neg,ns,0.762010203,0.000263442,0.000171994,1.531696063,0.126617283,pos,ns,0.858823721,Gm7990,Gm7990_Intron,8,76377922,76377971,76377922,76377923,50,-,CGTGGTTTGAAAGACATGACTGAATTGTTTTTGGTGCAGTATTATTCTGA,"Intron (Gm45740-201/Gm45740-201, intron 1 of 9)",8,76395132,76395724,593,2,Gm7990-201,17802,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,666226,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3910,cg25339883,0.0000512,0.00000719,7.121475562,7.49E-12,gain,yes,0.00000299,0.0000122,0.244998236,0.806619896,pos,ns,0.011115961,0.003580055,3.104969559,0.002078713,pos,ns,2.68220553,-0.000275163,0.000123118,-2.234959607,0.026132148,neg,ns,0.135665513,Celf4,Celf4_Exon,18,25753336,25753385,25753384,25753385,50,-,ACTCACCTTTGTGCATGCCTGTGAACCTGTCCTTCAGAACCGTAAGCTCG,Promoter (<=1kb),18,25477632,25753983,276352,2,Celf4-202,598,Celf4-202;Celf4-201;Celf4-203;Celf4-207;Celf4-206;Celf4-209;Celf4-205,Celf4;Celf4;Celf4;Celf4;Celf4;Celf4;Celf4,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,31,59,108013,ENSMUSG00000024268,conserved gene and region,18,25753376,25753608,233,*,233,18,0.592274678,0.882575758,0.077253219,5.03E-12,CpGisland,TRUE,U3,Pr-B
24296,cg21200467,-0.0000148,0.00000582,-2.549546856,0.011267527,loss,ns,0.00000242,0.0000099,0.244938363,0.806666214,pos,ns,-0.006498764,0.002898921,-2.241787383,0.025682251,neg,ns,1.590366907,0.000160256,0.0000997,1.607486654,0.108965648,pos,ns,0.742501202,Pou3f1,Pou3f1_Intergenic_upstream,4,124520845,124520894,124520893,124520894,50,+,CTTTGGTGAGTTTTTAAGGTATTGTTTTGTCAGGACCAATCACCGTGACG,Distal Intergenic,4,124656807,124660655,3849,1,Pou3f1-201,-135913,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,24,85,18991,ENSMUSG00000090125,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3916,cg11908885,0.0000939,0.0000101,9.308851391,2.45E-18,gain,yes,-0.0000042,0.0000171,-0.244852316,0.806732781,neg,ns,0.015692797,0.005022215,3.124676702,0.00194837,pos,ns,2.710328555,-0.000213928,0.000172714,-1.238631709,0.216419002,neg,ns,0.042035009,Celf4,Celf4_Exon,18,25753489,25753538,25753537,25753538,50,-,GAATGGTCGACGGGTTCCCCGGGCTGTGGCTTAATCCGTTCATGTGCCCG,Promoter (<=1kb),18,25477632,25753983,276352,2,Celf4-202,445,Celf4-202;Celf4-201;Celf4-203;Celf4-207;Celf4-206;Celf4-209;Celf4-205,Celf4;Celf4;Celf4;Celf4;Celf4;Celf4;Celf4,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,31,59,108013,ENSMUSG00000024268,conserved gene and region,18,25753376,25753608,233,*,233,18,0.592274678,0.882575758,0.077253219,5.03E-12,CpGisland,TRUE,U3,Pr-B
6056,cg05497169,0.0000214,0.00000327,6.560421028,2.25E-10,gain,yes,0.00000136,0.00000555,0.244799318,0.806773782,pos,ns,0.001140584,0.001625348,0.701747333,0.483363248,pos,ns,0.315726373,-0.0000224,0.0000559,-0.400876283,0.688787367,neg,ns,0.021273627,Psd2,Psd2_Intergenic_upstream,18,35920150,35920199,35920150,35920151,50,+,CGCCGCCAAAGTTTCACAGCCATCTGCTCGAGTGGAACGGCTTCCAGCGC,Distal Intergenic,18,35964830,36014712,49883,1,Psd2-201,-44631,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,24,29,74002,ENSMUSG00000024347,mapped to different genes,18,35919677,35920257,581,*,581,41,0.690189329,0.594514326,0.070567986,4.29E-25,CpGisland,TRUE,U3,Pr-B
2511,cg11235804,0.00000711,0.000008,0.888665275,0.374872024,gain,ns,-0.00000333,0.0000136,-0.244702121,0.806848978,neg,ns,-0.003366649,0.003981231,-0.84563018,0.398411309,neg,ns,0.399668343,0.000034,0.000136914,0.248510332,0.803904125,pos,ns,0.817090272,Pkhd1,Pkhd1_Intron,1,20107160,20107209,20107160,20107161,50,+,CGACGGGAGTCACCTGATGCCTTGTTAGACAGTTGTAAGGTTCTATTGCT,"Intron (Pkhd1-201/Pkhd1, intron 61 of 66)",1,20057779,20618064,560286,2,Pkhd1-201,510855,Pkhd1-201,Pkhd1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,25,241035,ENSMUSG00000043760,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27499,cg09886755,0.0000398,0.00000482,8.25041575,4.57E-15,gain,yes,-0.00000201,0.0000082,-0.244684493,0.806862616,neg,ns,0.008623039,0.002401044,3.591371483,0.000382346,pos,ns,3.417543651,-0.000124305,0.0000826,-1.505419877,0.13323437,neg,ns,0.050988878,Nfatc2,Nfatc2_Promoter,2,168601780,168601829,168601780,168601781,50,-,CGTGTTTATAGGCTTTCAATGCAGTAAAATAACGGGATTCCCTCACTGTT,Promoter (<=1kb),2,168519098,168601657,82560,2,Nfatc2-205,-172,Nfatc2-203;Nfatc2-209;Nfatc2-205,Nfatc2;Nfatc2;Nfatc2,-148;-125;-123,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,4,4,18019,ENSMUSG00000027544,conserved gene and region,2,168601147,168601870,724,*,724,65,0.662983425,0.81707063,0.089779006,2.91E-46,CpGisland,TRUE,U3,Pr-B
23476,cg27332443,0.0000459,0.0000071,6.457136306,4.12E-10,gain,yes,-0.00000295,0.0000121,-0.244645257,0.806892971,neg,ns,0.013307463,0.003536165,3.7632476,0.000200559,pos,ns,3.697757024,-0.000295278,0.000121608,-2.428105239,0.015746751,neg,ns,0.177612932,Rbfox3,Rbfox3_Intron,11,118551219,118551268,118551219,118551220,50,+,CGATCTCCTAAGGACTAATCAGACATTTGAACTGAGCTGTGCTAACAAAG,"Intron (Rbfox3-205/Rbfox3, intron 3 of 13)",11,118489762,118909550,419789,2,Rbfox3-205,358282,Rbfox3-205;Rbfox3-203;Rbfox3-201;Rbfox3-202;Rbfox3-204;Rbfox3-206;Rbfox3-209,Rbfox3;Rbfox3;Rbfox3;Rbfox3;Rbfox3;Rbfox3;Rbfox3,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,13,52897,ENSMUSG00000025576,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6170,cg18140959,0.0000056,0.00000343,1.631185081,0.103866737,gain,ns,-0.00000143,0.00000583,-0.24457145,0.806950074,neg,ns,0.001006456,0.001708523,0.589079687,0.556236836,pos,ns,0.254740254,0.0000633,0.0000588,1.077353143,0.282160178,pos,ns,0.060980616,Ptgs1,Ptgs1_Intron,2,36203525,36203574,36203573,36203574,50,-,CTTCTCTTTTCTTGAGTTTCAATTGACCCCAGCACCCATGGTGGCAGGCG,"Intron (Gm13429-201/Gm13429-201, intron 1 of 1)",2,36230426,36252272,21847,1,Ptgs1-201,-26901,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,5,19224,ENSMUSG00000047250,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
1984,cg04585419,-0.0000458,0.00000923,-4.960753139,0.00000116,loss,yes,0.00000383,0.0000157,0.244423002,0.807064927,pos,ns,-0.008020708,0.004595779,-1.745233755,0.081935031,neg,ns,1.086530378,0.00000503,0.000158048,0.03185676,0.974606782,pos,ns,0.880003326,Gm5283,Gm5283_Intergenic_downstream,3,16820617,16820666,16820665,16820666,50,-,TTAATCTAAAAAAATCGAATAATTCACTGCCCCTTGCCATTTACATATCG,Distal Intergenic,3,17230642,17230975,334,2,Gm5283-201,410358,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,10,383936,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4743,cg10246778,-0.00000407,0.00000211,-1.927643942,0.054812825,loss,ns,0.000000876,0.00000359,0.244420984,0.807066488,pos,ns,-0.001863781,0.001050394,-1.774364314,0.076984324,neg,ns,1.113597699,0.0000355,0.0000361,0.983746513,0.326007314,pos,ns,0.952544133,Mecom,Mecom_Intron,3,30411978,30412027,30411978,30411979,50,+,CGATGCAAAACAAGGCATTAATTTGGAGAGGCCTAGCTACTTACAATGCT,"Intron (Mecom-212/Mecom, intron 1 of 15)",3,29951299,30509733,558435,2,Mecom-212,97706,Mecom-212;Mecom-213;Mecom-207;Mecom-208;Mecom-211;Mecom-209,Mecom;Mecom;Mecom;Mecom;Mecom;Mecom,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,80,14013,ENSMUSG00000027684,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6023,cg09657259,-0.000000787,0.000000575,-1.36980668,0.1717386,loss,ns,0.000000239,0.000000976,0.244344603,0.807125585,pos,ns,0.000118557,0.000285991,0.414548896,0.678758878,pos,ns,0.168284477,1.93E-08,0.00000984,0.001967107,0.998431742,pos,ns,0.987261426,Cxxc5,Cxxc5_threeUTR,18,35860771,35860820,35860771,35860772,50,+,CGGGCGAAGACAAACGGATGCACCCGTCTTTAGAACCAAAAATATTCTCT,3' UTR,18,35829788,35861688,31901,1,Cxxc5-201,30983,Cxxc5-202;Cxxc5-201;Cxxc5-206;Cxxc5-203;Cxxc5-204;Cxxc5-205,Cxxc5;Cxxc5;Cxxc5;Cxxc5;Cxxc5;Cxxc5,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,7,49,67393,ENSMUSG00000046668,conserved gene and region,18,35860501,35860796,296,*,296,26,0.628378378,0.896447292,0.087837838,1.36E-18,CpGisland,TRUE,U10,Tr-S
11988,cg07123668,0.000128132,0.0000124,10.32480939,1.13E-21,gain,yes,-0.00000515,0.0000211,-0.244331982,0.80713535,neg,ns,0.020636811,0.006176621,3.341116596,0.000936467,pos,ns,3.028507317,-0.000391561,0.000212413,-1.843391482,0.06622628,neg,ns,0.356836294,Slc4a10,Slc4a10_fiveUTR,2,62046506,62046555,62046554,62046555,50,-,TGGTGAGTTGGAGTGTGCAATTGCCTCCTGCTTCAGAGCTACCTGATCCG,Promoter (<=1kb),2,62046462,62326730,280269,1,Slc4a10-202,44,Slc4a10-202;Slc4a10-206;Slc4a10-201;Slc4a10-203,Slc4a10;Slc4a10;Slc4a10;Slc4a10,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,12,94229,ENSMUSG00000026904,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24217,cg00815652,0.0000119,0.00000994,1.194814517,0.233072821,gain,ns,0.00000412,0.0000169,0.244329567,0.807137219,pos,ns,0.004199907,0.00494568,0.84920721,0.39642131,pos,ns,0.401843008,-0.000229958,0.000170082,-1.352043149,0.17734708,neg,ns,0.094678614,Gm12902,Gm12902_Intergenic_downstream,4,123956939,123956988,123956939,123956940,50,-,CGGCGTTTGAGCACGAATAAATCATTAGCATTTTATTTACAATTCTGGGT,Distal Intergenic,4,123926234,123926555,322,1,Gm12902-201,30754,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,34,34,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
12036,cg26253898,0.00000327,0.00000651,0.502103165,0.615951398,gain,ns,0.0000027,0.0000111,0.244288752,0.807168799,pos,ns,0.002401719,0.003239545,0.741375446,0.459027078,pos,ns,0.338161695,-0.000177844,0.000111408,-1.596337972,0.111432221,neg,ns,0.832903717,Gcg,Gcg_Intron,2,62481016,62481065,62481064,62481065,50,-,TCAACCATCTTAAAGCAGCCTCAGGCTACAACTTGGCATACCAGCTGTCG,"Intron (Gcg-201/Gcg, intron 1 of 5)",2,62474530,62483650,9121,2,Gcg-201,2585,Gcg-201;Gcg-202;Gcg-203,Gcg;Gcg;Gcg,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,3,14526,ENSMUSG00000000394,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26959,cg13621099,-0.00000547,0.00000491,-1.114814455,0.265793454,loss,ns,0.00000204,0.00000834,0.244287571,0.807169713,pos,ns,0.002270442,0.002443201,0.929290099,0.353461803,pos,ns,0.451657512,-0.000131214,0.000084,-1.5616775,0.119384234,neg,ns,0.886045713,Acbd6,Acbd6_Intron,1,155605932,155605981,155605980,155605981,50,-,TGAGCTTTTCCTCTTCCAGTGCCCATGAGAACCTCAGGAATGACAAGGCG,"Intron (Acbd6-201/Acbd6, intron 4 of 7)",1,155558122,155691330,133209,1,Acbd6-201,47810,Acbd6-201;Acbd6-206,Acbd6;Acbd6,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,7,72482,ENSMUSG00000033701,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20761,cg27160249,0.0000371,0.00000779,4.767846335,0.00000287,gain,ns,-0.00000323,0.0000132,-0.244277939,0.807177165,neg,ns,0.007252866,0.003876412,1.8710256,0.062283405,pos,ns,1.205627652,-0.000190245,0.000133309,-1.4270892,0.154560633,neg,ns,0.06075294,Rgs7bp,Rgs7bp_fiveUTR,13,105054192,105054241,105054192,105054193,50,+,CGCCCATTCGGTGCAGAACTCATGCATACACATCCACCAAGCCGAAGCCG,Promoter (<=1kb),13,104945904,105054930,109027,2,Rgs7bp-201,689,Rgs7bp-201,Rgs7bp,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,7,52882,ENSMUSG00000021719,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
1226,cg09901424,0.000163785,0.0000129,12.74476991,3.34E-30,gain,yes,0.00000533,0.0000218,0.244202419,0.807235598,pos,ns,0.049649553,0.006396137,7.762428168,1.22E-13,pos,yes,12.91336235,-0.0000373,0.000219963,-0.169709321,0.865349436,neg,ns,0.480750709,Bcor,Bcor_Intron,X,12073862,12073911,12073910,12073911,50,+,CCCGGGTCAATGTAAATTGATCATTGTCCGCCTTCCACAAAATAACATCG,"Intron (Bcor-202/Bcor, intron 1 of 14)",20,12036740,12080553,43814,2,Bcor-202,6642,Bcor-202;Bcor-203;Bcor-204;Bcor-206;Bcor-201;Bcor-207;Bcor-205,Bcor;Bcor;Bcor;Bcor;Bcor;Bcor;Bcor,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,56,74,71458,ENSMUSG00000040363,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16727,cg15927675,-0.00000138,0.00000203,-0.679980875,0.49702404,loss,ns,-0.000000842,0.00000345,-0.244182512,0.807251001,neg,ns,0.000297873,0.001009704,0.295010437,0.768183381,pos,ns,0.114535093,0.000012,0.0000347,0.346224663,0.729408748,pos,ns,0.957694347,Gpatch2l,Gpatch2l_Intron,12,86284087,86284136,86284087,86284088,50,-,CGCTTTGCCGCTGTATTAATACACATCAGGGGCCAGCTCCTAGCACTAAA,"Intron (Gpatch2l-204/Gpatch2l, intron 9 of 9)",12,86241858,86291784,49927,1,Gpatch2l-204,42229,Gpatch2l-204;Gpatch2l-201,Gpatch2l;Gpatch2l,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,17,70373,ENSMUSG00000021254,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26371,cg03133868,0.0000534,0.00000626,8.52859056,6.64E-16,gain,yes,-0.0000026,0.0000106,-0.244073544,0.807335316,neg,ns,0.004902681,0.003117292,1.572737217,0.116799705,pos,ns,0.932558253,-0.0000147,0.000107203,-0.13718142,0.890976449,neg,ns,0.215054132,Nkx2-2,Nkx2-2_threeUTR,2,147183992,147184041,147183992,147183993,50,+,CGCTCACCAAGTCCACTGCTGGGCCTGGACCAGGGGGTGTGCTGTCGGGT,3' UTR,2,147177546,147186101,8556,2,Nkx2-2-203,2060,Nkx2-2-203;Nkx2-2-201;Nkx2-2-202;Nkx2-2-204,Nkx2-2;Nkx2-2;Nkx2-2;Nkx2-2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,30,18088,ENSMUSG00000027434,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11004,cg22188736,0.0000945,0.0000103,9.14932753,7.87E-18,gain,yes,-0.00000428,0.0000175,-0.244013231,0.807381985,neg,ns,0.012810034,0.005138809,2.492802175,0.013195553,pos,ns,1.8795724,-0.00032645,0.000176723,-1.847236487,0.065665593,neg,ns,0.397462852,Gm47104,Gm47104_Promoter,13,56208558,56208607,56208606,56208607,50,-,TCTACTCAATGGATTGTGGTCAAGGCCATTGTAACGTGAGCAGTGCCTCG,Promoter (5-6kb),13,56202231,56202937,707,2,Gm47104-201,-5670,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,6,6,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
3178,cg21125802,-0.000041,0.0000196,-2.088229465,0.037592937,loss,ns,0.00000814,0.0000334,0.243950189,0.807430767,pos,ns,-0.006701816,0.009778789,-0.685342162,0.493640183,neg,ns,0.306589495,0.000186632,0.000336292,0.554970158,0.579315279,pos,ns,0.253324489,Klf9,Klf9_Exon,19,23141943,23141992,23141943,23141944,50,-,CGCCAAGAGCTTGTTGGACCTGAACAAGTACCGACCCATCCAGACCCCCT,Promoter (<=1kb),19,23141226,23168134,26909,1,Klf9-201,717,Klf9-201;Klf9-202,Klf9;Klf9,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,13,16601,ENSMUSG00000033863,conserved gene and region,19,23141183,23142172,990,*,990,120,0.684848485,1.033789605,0.121212121,5.63E-102,CpGisland,TRUE,U1,Pr-A
19320,cg17999142,-0.00000234,0.00000137,-1.706969737,0.088829016,loss,ns,-0.000000569,0.00000233,-0.243875916,0.807488239,neg,ns,0.000464758,0.000682955,0.68051154,0.49668855,pos,ns,0.303915852,-0.0000145,0.0000235,-0.619213409,0.536230569,neg,ns,0.96505985,Dock7,Dock7_Exon,4,98992390,98992439,98992390,98992391,50,-,CGTTAATGTTTGTAAGAAACTTGACGTCTCTGTGTGCGAAGACATACGAT,"Exon (Dock7-201/Dock7, exon 24 of 49)",4,98936671,99120915,184245,2,Dock7-201,128476,Dock7-201;Dock7-205;Dock7-204;Dock7-202;Dock7-214;Dock7-211;Dock7-206;Dock7-216,Dock7;Dock7;Dock7;Dock7;Dock7;Dock7;Dock7;Dock7,0;0;0;0;0;0;0;2519,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,9,67299,ENSMUSG00000028556,conserved gene but different region,4,98992385,98992567,183,*,183,12,0.464480874,1.22956327,0.065573771,0.000000226,CpGisland,TRUE,NA,NRS
20442,cg22262099,0.0000522,0.00000561,9.303245761,2.55E-18,gain,yes,-0.00000232,0.00000953,-0.243805513,0.807542718,neg,ns,0.006733919,0.002792108,2.41176908,0.016456207,pos,ns,1.783670256,-0.000225998,0.000096,-2.353645329,0.019214405,neg,ns,0.08001433,Hoxc4,Hoxc4_threeUTR,15,103035768,103035817,103035816,103035817,50,-,CACTCGCTGTGCCTCTCTGAGAGGCAGATCAAAATCTGGTTCCAAAACCG,3' UTR,15,103018934,103036405,17472,1,Hoxc4-202,16834,Hoxc4-202;Hoxc4-201,Hoxc4;Hoxc4,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,17,91,15423,ENSMUSG00000075394,conserved gene but different region,15,103035816,103035967,152,*,152,15,0.677631579,0.904761905,0.098684211,1.14E-11,CpGisland,TRUE,U13,Hc-P
16977,cg27660154,-0.0000449,0.00000995,-4.510179984,0.0000092,loss,ns,-0.00000412,0.0000169,-0.243775941,0.807565601,neg,ns,-0.004317132,0.004950603,-0.872041649,0.383860547,neg,ns,0.415826522,-0.0000989,0.000170251,-0.580642631,0.561903187,neg,ns,0.779830882,Zfp423,Zfp423_Intron,8,87744974,87745023,87744974,87744975,50,-,CGCCAGAAGCTGGTGAATATATGCTTCATAGCTTCAGATAAACCTTTTGT,"Intron (Zfp423-203/Zfp423, intron 3 of 5)",8,87661810,87804439,142630,2,Zfp423-203,59416,Zfp423-203;Zfp423-202;Zfp423-201,Zfp423;Zfp423;Zfp423,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,42,53,94187,ENSMUSG00000045333,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17231,cg21736530,0.00000673,0.00000222,3.037298534,0.002589906,gain,ns,-0.000000917,0.00000376,-0.243734368,0.807597772,neg,ns,-0.002734682,0.001102621,-2.480163695,0.013662954,neg,ns,1.864455397,0.000105446,0.0000379,2.780822441,0.00575387,pos,ns,0.052062301,Nog,Nog_Intergenic_downstream,11,89299136,89299185,89299184,89299185,50,+,GGAGGTCTTTAACTTTTAATCCTTTTACAATGAAGCCTCAGATAGTCGCG,Downstream (1-2kb),11,89300638,89302332,1695,2,Nog-201,3147,Nog-201,Nog,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,16,36,18121,ENSMUSG00000048616,conserved gene and region,11,89299182,89299479,298,*,298,24,0.657718121,0.788099174,0.080536913,2.71E-16,CpGisland,TRUE,U3,Pr-B
4236,cg00715100,0.00000126,0.00000475,0.264904978,0.791258715,gain,ns,0.00000197,0.00000806,0.243693979,0.807629027,pos,ns,0.005290301,0.002362728,2.239064711,0.025860841,pos,ns,1.587357359,-0.000210799,0.0000813,-2.594320939,0.009928022,neg,ns,0.913803252,Rfx3,Rfx3_Exon,19,27806271,27806320,27806319,27806320,50,+,AGGATAGACTCATGTTTGCACAGAGTTATCAGCTTTGCTTTCGGAAGTCG,"Exon (Rfx3-202/Rfx3, exon 12 of 18)",19,27761721,27982948,221228,2,Rfx3-202,176628,Rfx3-202;Rfx3-201;Rfx3-208;Rfx3-203;Rfx3-204;Rfx3-206;Rfx3-205,Rfx3;Rfx3;Rfx3;Rfx3;Rfx3;Rfx3;Rfx3,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,15,19726,ENSMUSG00000040929,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10344,cg03380023,-0.0000391,0.0000111,-3.523531195,0.000489945,loss,ns,0.00000459,0.0000188,0.243658185,0.807656726,pos,ns,-0.00751933,0.005519229,-1.362387755,0.174064539,neg,ns,0.759289696,0.0000691,0.000189806,0.364091032,0.716038238,pos,ns,0.530940684,Akap6,Akap6_Intron,12,53124748,53124797,53124748,53124749,50,-,CGTTTAAGTGTTAAAAAATTTCATTAATGATGCATAGAGCTATCTACTTC,"Intron (Akap6-201/Akap6, intron 12 of 13)",12,52699383,53155599,456217,1,Akap6-201,425365,Akap6-201;Akap6-202,Akap6;Akap6,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,13,238161,ENSMUSG00000061603,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10822,cg13071254,0.000118689,0.00000683,17.37019536,1.13E-47,gain,yes,-0.00000283,0.0000116,-0.24363206,0.807676943,neg,ns,0.010575965,0.003400814,3.109833325,0.002045817,pos,ns,2.689133173,0.0000228,0.000116954,0.194785065,0.845688808,pos,ns,0.209719815,Isl2,Isl2_Intergenic_downstream,9,55546816,55546865,55546864,55546865,50,+,CTGGATATGCCGTGCCCAGGTCACTTGGTGTGACATTTCAAACCCCTGCG,Distal Intergenic,9,55542336,55544280,1945,1,Isl2-204,4480,Isl2-205;Isl2-201;Isl2-203;Isl2-202;Isl2-204;Scaper-202;Scaper-201;Scaper-204;Scaper-205,Isl2;Isl2;Isl2;Isl2;Isl2;Scaper;Scaper;Scaper;Scaper,8144;5668;5609;5609;4480;0;0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,4,104360,ENSMUSG00000032318,conserved gene and region,9,55546070,55546898,829,*,829,68,0.58986731,0.951779564,0.082026538,1.34E-45,CpGisland,TRUE,NA,NRS
24734,cg12565017,0.00000991,0.0000134,0.739126324,0.46038957,gain,ns,0.00000555,0.0000228,0.243613253,0.807691497,pos,ns,0.008768711,0.006675276,1.313610288,0.18994873,pos,ns,0.721363606,0.00030763,0.000229562,1.340073339,0.181202892,pos,ns,0.289006056,Tspan9,Tspan9_Exon,6,128034416,128034465,128034464,128034465,50,-,GTGGACGGCTTGGCAAAGTCCGAGTCCTTGCTGTCCAAAGATGGACTCCG,"Exon (Tspan9-204/Tspan9, exon 1 of 5)",6,127961396,128143563,182168,2,Tspan9-203,109098,Tspan9-203;Tspan9-202;Tspan9-201;Tspan9-204;Tspan9-211;Tspan9-209;Tspan9-208;Tspan9-207;Tspan9-206,Tspan9;Tspan9;Tspan9;Tspan9;Tspan9;Tspan9;Tspan9;Tspan9;Tspan9,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,8,109246,ENSMUSG00000030352,conserved gene and region,6,128034330,128034771,442,*,442,46,0.692307692,0.869148891,0.104072398,4.63E-36,CpGisland,TRUE,U3,Pr-B
14183,cg18342348,0.0000559,0.0000054,10.35606796,8.85E-22,gain,yes,-0.00000223,0.00000918,-0.243426523,0.807836003,neg,ns,0.003774224,0.002688234,1.403978838,0.161326158,pos,ns,0.792295208,-0.000197545,0.0000924,-2.136822016,0.033395026,neg,ns,0.099792888,Gm28230,Gm28230_Intron,2,74734564,74734613,74734564,74734565,50,-,CGGGCTATTTTATCAGTGTGACAATTGCCCGGGTTGGTGTGATAAATCAT,"Intron (Hoxd3-203/Hoxd3, intron 1 of 2)",2,74726728,74747918,21191,1,Gm28230-201,7836,Gm28230-201;Hoxd3-203;Hoxd3-205;Hoxd3-202,Gm28230;Hoxd3;Hoxd3;Hoxd3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,23,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
25338,cg04605537,-0.0000152,0.0000229,-0.663008365,0.507817875,loss,ns,-0.00000949,0.000039,-0.24337907,0.807872727,neg,ns,-0.019201214,0.011420937,-1.681229359,0.093725522,neg,ns,1.028142132,0.000656934,0.000392765,1.672586687,0.095417559,pos,ns,0.163652646,Ube2d3,Ube2d3_Exon,3,135440627,135440676,135440675,135440676,50,-,TTTAGTCTCATTTTCTTGCTCTAACTTCTATCCCGCATTTTAAGATGGCG,"Exon (Ube2d3-203/Ube2d3, exon 1 of 1)",3,135438149,135465237,27089,1,Ube2d3-204,2478,Ube2d3-204;Ube2d3-201;Ube2d3-216;Ube2d3-202;Ube2d3-209;Ube2d3-206;Ube2d3-213;Ube2d3-212;Ube2d3-215;Ube2d3-214;Ube2d3-203;Ube2d3-210;Ube2d3-208,Ube2d3;Ube2d3;Ube2d3;Ube2d3;Ube2d3;Ube2d3;Ube2d3;Ube2d3;Ube2d3;Ube2d3;Ube2d3;Ube2d3;Ube2d3,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,66105,ENSMUSG00000078578,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7444,cg02322989,0.0000157,0.00000387,4.07423819,0.0000587,gain,ns,-0.0000016,0.00000657,-0.243366265,0.807882637,neg,ns,0.003913207,0.001923756,2.034148663,0.042787641,pos,ns,1.368681654,-0.000132071,0.0000662,-1.996301708,0.04677546,neg,ns,0.074231296,Lrp1b,Lrp1b_fiveUTR,2,42653033,42653082,42653081,42653082,50,+,CCCGTGTGTCTTGACTTTTCAATGCAGGGTACGTCTGATCTTACATCACG,Promoter (<=1kb),2,41282066,42653057,1370992,2,Lrp1b-211,0,Lrp1b-201;Lrp1b-211;Lrp1b-205;Lrp1b-212;Lrp1b-203;Lrp1b-207,Lrp1b;Lrp1b;Lrp1b;Lrp1b;Lrp1b;Lrp1b,0;0;0;-107;0;-18,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,7,94217,ENSMUSG00000049252,conserved gene and region,2,42652828,42653141,314,*,314,27,0.624203822,0.890265673,0.085987261,4.90E-19,CpGisland,TRUE,NA,NRS
10676,cg07647507,0.00000678,0.00000142,4.783555551,0.00000267,gain,ns,-0.000000586,0.00000241,-0.243293794,0.807938723,neg,ns,0.001404574,0.000705616,1.99056422,0.047406617,pos,ns,1.324161038,-0.00000555,0.0000243,-0.228670447,0.81927584,neg,ns,0.027326639,Zfp462,Zfp462_fiveUTR,4,54948077,54948126,54948077,54948078,50,+,CGATCCTCCATTGCTGAGACCCGGCAGAAGCACATGAGACTCCCAAACAA,5' UTR,4,54945048,55008314,63267,1,Zfp462-204,3029,Zfp462-204;Zfp462-203,Zfp462;Zfp462,0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,23,242466,ENSMUSG00000060206,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
13879,cg03215948,0.0000125,0.00000487,2.567425664,0.010714422,gain,ns,-0.00000201,0.00000827,-0.243211951,0.808002063,neg,ns,-0.004134944,0.002422127,-1.707153951,0.088794735,neg,ns,1.051612786,0.000102945,0.0000833,1.235878051,0.217439564,pos,ns,0.885935626,Trpv1,Trpv1_Exon,11,73244239,73244288,73244239,73244240,50,+,CGACTCCTGCAGGACAAGTGGGACAGATTCGTCAAGCGCATCTTCTACTT,"Exon (Trpv1-202/Trpv1, exon 8 of 16)",11,73234292,73261239,26948,1,Trpv1-202,9947,Trpv1-202;Trpv1-201;Trpv1-203;Trpv1-205,Trpv1;Trpv1;Trpv1;Trpv1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,193034,ENSMUSG00000005952,mapped to different genes,11,73244206,73244378,173,*,173,10,0.531791908,0.823809524,0.057803468,0.00000971,CpGisland,TRUE,NA,NRS
12009,cg10553618,-0.0000158,0.00000571,-2.767426979,0.005989665,loss,ns,0.00000236,0.0000097,0.242928576,0.808221386,pos,ns,0.000888353,0.002840712,0.312721878,0.75470224,pos,ns,0.122224361,-0.000108717,0.0000977,-1.112861362,0.266630179,neg,ns,0.879634966,Dpp4,Dpp4_Intron,2,62337801,62337850,62337801,62337802,50,+,CGAAAACTGTGATAAAAGTGTCATGATGCAAATTGTTTTACATTAACAAT,"Intron (Dpp4-201/Dpp4, intron 23 of 25)",2,62330073,62412231,82159,2,Dpp4-201,74381,Dpp4-201;Dpp4-206,Dpp4;Dpp4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,6,13482,ENSMUSG00000035000,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6019,cg03622918,0.0000205,0.0000077,2.664106399,0.008123037,gain,ns,-0.00000318,0.0000131,-0.242819021,0.808306181,neg,ns,0.000217627,0.003830952,0.056807498,0.954735138,pos,ns,0.020117093,0.000128339,0.000131746,0.974140266,0.33074641,pos,ns,0.919599223,Cxxc5,Cxxc5_Intron,18,35855718,35855767,35855766,35855767,50,+,TTGGGGGCTGGATGTGTTCCTGGCAGGGCCGATGATGGATGCGCCCGCCG,"Intron (Gm50371-201/Gm50371-201, intron 4 of 4)",18,35829397,35859002,29606,1,Cxxc5-202,26321,Cxxc5-202;Cxxc5-201;Cxxc5-206;Cxxc5-203;Cxxc5-204;Cxxc5-205,Cxxc5;Cxxc5;Cxxc5;Cxxc5;Cxxc5;Cxxc5,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,49,67393,ENSMUSG00000046668,conserved gene and region,18,35855560,35855824,265,*,265,22,0.671698113,0.73685541,0.083018868,2.89E-15,CpGisland,TRUE,U8,En-Pd
17798,cg21327742,0.00000164,0.00000361,0.453830226,0.650268577,gain,ns,0.00000149,0.00000613,0.242783627,0.808333576,pos,ns,0.00294629,0.001795881,1.640582093,0.101898404,pos,ns,0.991832619,-0.000091,0.0000618,-1.472815214,0.141815442,neg,ns,0.869206047,Ambra1,Ambra1_Exon,2,91772665,91772714,91772713,91772714,50,-,CCCTGCTTCTGCCAGAGCTACTACCCCTTCCTTTTCTTTTGTACAGACCG,"Exon (Ambra1-203/Ambra1, exon 8 of 19)",2,91730134,91918849,188716,1,Ambra1-203,42531,Ambra1-203;Ambra1-205;Ambra1-206;Ambra1-209;Ambra1-204;Ambra1-202;Ambra1-201;Ambra1-207,Ambra1;Ambra1;Ambra1;Ambra1;Ambra1;Ambra1;Ambra1;Ambra1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,12,228361,ENSMUSG00000040506,conserved gene and region,2,91772713,91772853,141,*,141,10,0.659574468,0.680501931,0.070921986,0.0000016,CpGisland,TRUE,U10,Tr-S
17210,cg20798194,-0.000000858,0.00000129,-0.664132185,0.507099369,loss,ns,-0.000000533,0.0000022,-0.24264482,0.808441017,neg,ns,0.000748264,0.000643323,1.163123414,0.245673963,pos,ns,0.609640869,-0.0000308,0.0000221,-1.393404943,0.164495594,neg,ns,0.96325369,Nog,Nog_Intergenic_downstream,11,89194068,89194117,89194116,89194117,50,-,CTTTTGATTTGGCAAAATCCAAAAATAAAACAAAACCCCACCATCTTCCG,Distal Intergenic,11,89300638,89302332,1695,2,Nog-201,108264,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,36,18121,ENSMUSG00000048616,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1498,cg27317803,-0.00000915,0.00000321,-2.84973859,0.004668526,loss,ns,0.00000132,0.00000545,0.242479677,0.808568847,pos,ns,-0.001321924,0.001597857,-0.827310588,0.408697422,neg,ns,0.388598102,-0.0000547,0.000055,-0.99514902,0.320439923,neg,ns,0.0394318,Ddx3x,Ddx3x_fiveUTR,X,13281094,13281143,13281142,13281143,50,-,TTCTCGGTACTCTTCAGGGATGAGTCATGTGGCAGTGGAAAATGCGCTCG,Promoter (<=1kb),20,13280970,13294052,13083,1,Ddx3x-201,124,Ddx3x-201;Ddx3x-205;Ddx3x-204,Ddx3x;Ddx3x;Ddx3x,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,6,13205,ENSMUSG00000000787,conserved gene but different region,X,13280834,13281277,444,*,444,39,0.623873874,0.906122449,0.087837838,1.27E-27,CpGisland,TRUE,U1,Pr-A
12973,cg10004678,-0.00000546,0.00000667,-0.817941947,0.414018578,loss,ns,-0.00000275,0.0000113,-0.242355729,0.808664794,neg,ns,-0.001821531,0.003321358,-0.548429695,0.583791622,neg,ns,0.233742142,0.000313277,0.000114221,2.742721719,0.006447606,pos,ns,0.838405804,Gm5342,Gm5342_Intergenic_upstream,7,68983182,68983231,68983230,68983231,50,-,GGATTCTAACCCTATCAAATTAAAGCATTTTGCTCACTTATTCCCAAACG,Distal Intergenic,7,69209884,69210886,1003,1,Gm5342-201,-226702,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,7,384741,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7249,cg21705026,0.0000199,0.00000627,3.170275393,0.001675161,gain,ns,0.00000258,0.0000107,0.242180489,0.80880045,pos,ns,-0.00082972,0.003122614,-0.265713291,0.790636648,neg,ns,0.102023059,-0.000032,0.000107386,-0.298189655,0.765758177,neg,ns,0.050818218,Gm8707,Gm8707_Intron,9,41736329,41736378,41736329,41736330,50,-,CGCTGAGCTAAATTAGCATTTTTTCAATTGGAGATCGAAGTTGATTTATT,"Intron (Gm35835-202/Gm35835-202, intron 2 of 4)",9,41654303,41655282,980,1,Gm8707-201,82075,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,12,667566,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
13384,cg27539081,-0.000012,0.0000145,-0.825093269,0.409953095,loss,ns,-0.00000596,0.0000246,-0.24205559,0.808897139,neg,ns,-0.019603985,0.007208966,-2.719389354,0.006908919,neg,ns,2.160589872,0.000748028,0.000247916,3.017266477,0.002762037,pos,ns,0.735171305,Nr2f2,Nr2f2_Exon,7,70354704,70354753,70354752,70354753,50,+,ACATATCCCGGATGAGGGTTTCGATGGGGGTTTTACCTACCAAACGGACG,"Exon (Nr2f2-201/Nr2f2, exon 3 of 3)",7,70351944,70360593,8650,2,Nr2f2-201,5840,Nr2f2-201;Nr2f2-203;Nr2f2-202;Nr2f2-205;Nr2f2-204;Nr2f2-206,Nr2f2;Nr2f2;Nr2f2;Nr2f2;Nr2f2;Nr2f2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,24,69,11819,ENSMUSG00000030551,conserved gene and region,7,70354695,70354858,164,*,164,11,0.536585366,0.993939394,0.067073171,0.000000682,CpGisland,TRUE,NA,NRS
8569,cg07111620,0.0000183,0.00000647,2.831081512,0.004942291,gain,ns,-0.00000266,0.000011,-0.242041271,0.808908224,neg,ns,0.004243161,0.00322102,1.317334485,0.188699356,pos,ns,0.724229582,-0.000223028,0.000110771,-2.01342076,0.044934343,neg,ns,0.801024142,Gm13475,Gm13475_Intergenic_downstream,2,45356752,45356801,45356800,45356801,50,+,TGTAACACAAAAATAACCCCTTTTCATTACTGGCATGCCACTGTAGCACG,Distal Intergenic,2,45329232,45329465,234,1,Gm13475-201,27520,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,21,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10823,cg25290081,0.000114986,0.00000798,14.40532263,2.27E-36,gain,yes,-0.00000328,0.0000136,-0.241928207,0.808995754,neg,ns,0.007676569,0.003972807,1.932278449,0.054236055,pos,ns,1.265711905,0.00011645,0.000136625,0.852332909,0.394687344,pos,ns,0.237066817,Isl2,Isl2_Intergenic_downstream,9,55546849,55546898,55546897,55546898,50,-,CATTTCAAACCCCTGCGACTTGTTTTCTTGAAAACTGGCTTTAGTGATCG,Downstream (<1kb),9,55542336,55544280,1945,1,Isl2-204,4562,Isl2-205;Isl2-201;Isl2-203;Isl2-202;Isl2-204;Scaper-202;Scaper-201;Scaper-204;Scaper-205,Isl2;Isl2;Isl2;Isl2;Isl2;Scaper;Scaper;Scaper;Scaper,8177;5701;5642;5642;4513;0;0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,4,4,104360,ENSMUSG00000032318,conserved gene and region,9,55546070,55546898,829,*,829,68,0.58986731,0.951779564,0.082026538,1.34E-45,CpGisland,TRUE,NA,NRS
19344,cg25041458,-0.00000219,0.00000166,-1.317048023,0.18879524,loss,ns,0.000000683,0.00000282,0.241863034,0.809046211,pos,ns,0.000890639,0.000826802,1.077208524,0.282224664,pos,ns,0.549405035,-0.0000144,0.0000284,-0.505469664,0.613588196,neg,ns,0.955870391,Dock7,Dock7_Exon,4,99064000,99064049,99064048,99064049,50,+,CTGCTAACAATATTCATTAAATGGATTGCAGTCCAAGCAAAAGGCATGCG,"Exon (Dock7-201/Dock7, exon 11 of 49)",4,98936671,99120915,184245,2,Dock7-201,56866,Dock7-201;Dock7-205;Dock7-202;Dock7-214;Dock7-218,Dock7;Dock7;Dock7;Dock7;Dock7,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,9,67299,ENSMUSG00000028556,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14054,cg21109833,0.000015,0.00000321,4.663070052,0.00000464,gain,ns,-0.00000132,0.00000546,-0.241779752,0.809110687,neg,ns,0.005334819,0.001600012,3.334237079,0.000959109,pos,ns,3.018132148,-0.000101717,0.000055,-1.848588158,0.065469426,neg,ns,0.060832088,Adgrb1,Adgrb1_fiveUTR,15,74516180,74516229,74516228,74516229,50,+,CTCTATAAAGCCTGATGTAATCCGTAATGCAGTCTCTGGCTCCCGATTCG,Promoter (<=1kb),15,74516195,74589464,73270,1,Adgrb1-201,0,Adgrb1-201;Adgrb1-205;Adgrb1-206,Adgrb1;Adgrb1;Adgrb1,0;-209;-602,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,5,107831,ENSMUSG00000034730,conserved gene and region,15,74516202,74517009,808,*,808,101,0.742574257,0.914723816,0.125,1.74E-87,CpGisland,TRUE,U3,Pr-B
8622,cg26717740,0.0000116,0.00000892,1.303643982,0.193322277,gain,ns,0.00000366,0.0000151,0.241755857,0.809129187,pos,ns,0.019849717,0.004437657,4.4730176,0.0000108,pos,ns,4.965030749,-0.000661961,0.000152611,-4.33757786,0.0000195,neg,ns,0.513192747,Gm13475,Gm13475_Intergenic_downstream,2,45460412,45460461,45460412,45460413,50,+,CGAGGGATTTCAAGGTCATTTGCCAATGGCCTGGCCTCCATTAACTTCTT,Distal Intergenic,2,45329232,45329465,234,1,Gm13475-201,131180,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,21,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27521,cg12756792,-0.0000349,0.0000062,-5.636220306,3.91E-08,loss,yes,-0.00000255,0.0000105,-0.241671971,0.809194132,neg,ns,-0.005757741,0.003085941,-1.865797552,0.06301401,neg,ns,1.200562881,-0.0000169,0.000106125,-0.159454994,0.873414253,neg,ns,0.882929951,Gm5265,Gm5265_Intergenic_downstream,1,168991603,168991652,168991651,168991652,50,-,ACAATAATTGCCTTTCTTTTAGATTTCAGTGTTTCCCTTTTGTGTTTACG,Distal Intergenic,1,169453528,169453869,342,2,Gm5265-201,462266,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,13,13,383613,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20818,cg15402853,-0.000000338,0.000001,-0.336969507,0.736367905,loss,ns,0.000000412,0.00000171,0.241571997,0.809271536,pos,ns,-0.000206091,0.000499846,-0.412308492,0.680398301,neg,ns,0.167236779,0.000015,0.0000172,0.871194753,0.384321992,pos,ns,0.035465861,Atp2c1,Atp2c1_fiveUTR,9,105494560,105494609,105494560,105494561,50,+,CGTCCCACGGCTGCTCCCACCACCCCTAGCAGCAGCATCTGCAAGAGAAA,5' UTR,9,105403539,105521147,117609,2,Atp2c1-212,26538,Atp2c1-212;Atp2c1-216;Atp2c1-204;Atp2c1-201;Atp2c1-202;Atp2c1-205;Atp2c1-214;Atp2c1-208;Atp2c1-217;Atp2c1-209;Atp2c1-207;Atp2c1-221;Atp2c1-219;Atp2c1-213,Atp2c1;Atp2c1;Atp2c1;Atp2c1;Atp2c1;Atp2c1;Atp2c1;Atp2c1;Atp2c1;Atp2c1;Atp2c1;Atp2c1;Atp2c1;Atp2c1,0;-140;0;0;0;0;-98;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,2,235574,ENSMUSG00000032570,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
20658,cg24437280,0.000013,0.00000548,2.366084314,0.018592148,gain,ns,0.00000225,0.00000931,0.241568129,0.809274531,pos,ns,0.008194658,0.002727884,3.004034523,0.002881431,pos,ns,2.540391851,-0.0000995,0.0000938,-1.060640526,0.28967894,neg,ns,0.916478266,Adamts6,Adamts6_threeUTR,13,104369687,104369736,104369735,104369736,50,-,ATGAATCGCCCAGAAGCCGTCCTGATTAAATAATAAAGAACCCATTTCCG,3' UTR,13,104287835,104496695,208861,1,Adamts6-207,81852,Adamts6-207;Adamts6-202;Adamts6-201;Adamts6-206;Adamts6-203;Adamts6-204;Adamts6-205,Adamts6;Adamts6;Adamts6;Adamts6;Adamts6;Adamts6;Adamts6,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,19,31,108154,ENSMUSG00000046169,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4881,cg25477155,-0.00000693,0.00000296,-2.342937232,0.01976465,loss,ns,-0.00000121,0.00000503,-0.24150679,0.809322022,neg,ns,-0.000912406,0.00147237,-0.619685239,0.535920231,neg,ns,0.270899848,-0.0000167,0.0000506,-0.328863439,0.742480963,neg,ns,0.912319662,Stab1,Stab1_Exon,14,31147505,31147554,31147505,31147506,50,-,CGCCCATGTAGCCATCCTGGCAGGTGCATGTCCGCTGCCCAGGTGCCACC,"Exon (Stab1-201/Stab1, exon 42 of 69)",14,31139013,31168641,29629,2,Stab1-201,21087,Stab1-212;Stab1-201;Stab1-209;Stab1-208;Stab1-203;Stab1-213,Stab1;Stab1;Stab1;Stab1;Stab1;Stab1,-4673;0;-2052;-3780;-4313;-4508,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,192187,ENSMUSG00000042286,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22581,cg10057411,-0.000000233,0.00000272,-0.085730518,0.931735984,loss,ns,0.00000111,0.00000461,0.241427447,0.809383455,pos,ns,0.003907496,0.001351735,2.890725645,0.004114921,pos,ns,2.385638486,-0.000132388,0.0000465,-2.847904986,0.004694807,neg,ns,0.937859424,Rpl19-ps10,Rpl19-ps10_Intergenic_downstream,7,115294699,115294748,115294699,115294700,50,-,CGCAAACCTGACATTAATAAGCTACAAGAGATTACATGATTTAGAAAAGA,Distal Intergenic,7,115172056,115172385,330,1,Rpl19-ps10-201,122692,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,29,668472,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2561,cg18169540,-0.000000189,0.00000318,-0.059479008,0.952608909,loss,ns,-0.0000013,0.00000541,-0.241370878,0.809427255,neg,ns,-0.000290897,0.001583891,-0.183659626,0.854400554,neg,ns,0.068338479,-0.0000137,0.0000545,-0.251916295,0.801272693,neg,ns,0.884765603,Dvl3,Dvl3_threeUTR,16,20531469,20531518,20531469,20531470,50,-,CGCATGGCCATGGGAAACCCCAGTGAGTTCTTTGTGGATGTGATGTGAGC,3' UTR,16,20516982,20531671,14690,1,Dvl3-201,14487,Ap2m1-202;Ap2m1-201;Ap2m1-211;Ap2m1-205;Dvl3-201;Dvl3-203;Dvl3-204,Ap2m1;Ap2m1;Ap2m1;Ap2m1;Dvl3;Dvl3;Dvl3,-3960;-3962;-4001;-4031;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,3,13544,ENSMUSG00000003233,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3807,cg13459195,0.000180471,0.00000653,27.62708322,1.35E-85,gain,yes,-0.00000268,0.0000111,-0.241337391,0.809453184,neg,ns,0.018580353,0.003251236,5.714859108,2.58E-08,pos,ns,7.58869326,-0.000113139,0.00011181,-1.011891695,0.312378975,neg,ns,0.157694321,Celf4,Celf4_Exon,18,25486855,25486904,25486855,25486856,50,-,CGTCTTTGGGCCGCTTCAGCTGCACCTTGAGCCTCTTCATGCCGATCTGG,Promoter (<=1kb),18,25479488,25486897,7410,2,Celf4-208,0,Celf4-202;Celf4-201;Celf4-203;Celf4-207;Celf4-206;Celf4-208;Celf4-204;Celf4-210,Celf4;Celf4;Celf4;Celf4;Celf4;Celf4;Celf4;Celf4,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,31,59,108013,ENSMUSG00000024268,conserved gene but different region,18,25486659,25486867,209,*,209,18,0.679425837,0.746873139,0.086124402,7.38E-13,CpGisland,TRUE,NA,NRS
3999,cg24337458,-0.0000446,0.00000597,-7.475428783,7.94E-13,loss,yes,0.00000245,0.0000101,0.241285089,0.809493681,pos,ns,-0.004738698,0.002969282,-1.595907122,0.111528425,neg,ns,0.952614433,0.000138841,0.000102113,1.35967836,0.174919841,pos,ns,0.879707392,Gm50479,Gm50479_Intron,8,26351665,26351714,26351713,26351714,50,+,GCGAGTCCAGCCCTTGACTGTCAGTGGGGCCCATCAGTCCTAATTTATCG,"Intron (Gm45307-201/Gm45307-201, intron 2 of 2)",8,26237222,26237407,186,1,Gm50479-201,114443,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,21,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24670,cg13672945,0.00000183,0.00000151,1.209667704,0.227328093,gain,ns,-0.000000619,0.00000257,-0.24116001,0.809590531,neg,ns,-0.0000971,0.000751957,-0.12909242,0.897368234,neg,ns,0.047029308,0.0000194,0.0000259,0.749263519,0.454266564,pos,ns,0.955360354,Gm42715,Gm42715_Exon,7,127552673,127552722,127552721,127552722,50,+,TTTTATGACAGCGACTGGAATCCCACCATGGATGCTCAGGCCCAGGACCG,"Exon (Srcap-207/Srcap, exon 29 of 34)",7,127519584,127567054,47471,1,Gm42715-201,33089,Gm42715-201;Srcap-207;Srcap-206;Srcap-214,Gm42715;Srcap;Srcap;Srcap,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,7,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15177,cg17924340,0.00000631,0.0000011,5.751398444,2.12E-08,gain,yes,-0.000000449,0.00000186,-0.241106605,0.809631884,neg,ns,0.001505327,0.000545887,2.757577074,0.006168593,pos,ns,2.209813873,-0.0000467,0.0000188,-2.485200499,0.013474948,neg,ns,0.014295945,Polg,Polg_Intron,7,79508711,79508760,79508711,79508712,50,+,CGTTACTAATCCGAAGTTACAGCGCTAATTCCCTGATCCGGCCGCTCCCA,"Intron (Mir9-3hg-205/Mir9-3hg-205, intron 1 of 1)",7,79446231,79466362,20132,2,Polg-201,-42349,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,16,18975,ENSMUSG00000039176,mapped to different genes,7,79508346,79509151,806,*,806,76,0.643920596,0.91290611,0.094292804,1.10E-55,CpGisland,TRUE,U13,Hc-P
3953,cg02286774,0.000016,0.00000442,3.621948356,0.00034149,gain,ns,0.00000181,0.0000075,0.241059603,0.809668279,pos,ns,-0.00283012,0.002198167,-1.287490872,0.198883615,neg,ns,0.701400995,0.0000235,0.0000756,0.310614264,0.75630262,pos,ns,0.887052692,5730522E02Rik,5730522E02Rik_Intron,11,25903409,25903458,25903457,25903458,50,-,CTATGGAAACCAACCTCTGGAGACTTAATATTCTGATCAGCTCACCTCCG,"Intron (5730522E02Rik-202/5730522E02Rik, intron 2 of 5)",11,25617668,26210569,592902,2,5730522E02Rik-202,307111,5730522E02Rik-202;5730522E02Rik-201;5730522E02Rik-204,5730522E02Rik;5730522E02Rik;5730522E02Rik,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,90,70626,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18483,cg26639901,-0.000015,0.0000041,-3.657306698,0.00029937,loss,ns,0.00000168,0.00000697,0.241025403,0.809694761,pos,ns,-0.006001988,0.002042158,-2.939041453,0.00353956,neg,ns,2.451050721,0.000113219,0.0000702,1.6121235,0.107952639,pos,ns,0.913101963,Gm5881,Gm5881_Intergenic_downstream,6,96000211,96000260,96000211,96000212,50,+,CGTGGGCTCGCTGCTCAGCAGGCCCTGAAGCAATCTATGAATAACTTCCC,Distal Intergenic,6,96033003,96033369,367,2,Gm5881-201,33109,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,545867,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9137,cg17962331,-0.00000681,0.00000288,-2.367139755,0.018540175,loss,ns,-0.00000118,0.00000489,-0.240913492,0.809781421,neg,ns,0.001108379,0.00143207,0.773969839,0.439538467,pos,ns,0.357003111,-0.0000968,0.0000492,-1.96635965,0.050149028,neg,ns,0.928481924,Taf5,Taf5_Exon,19,47078843,47078892,47078891,47078892,50,+,AGATTTTGTATGGTCACAGTGGGCCTGTCTACGGAGCCAGCTTCAGTCCG,"Exon (Taf5-201/Taf5, exon 7 of 11)",19,47067746,47083479,15734,1,Taf5-201,11097,Atp5md-202;Atp5md-201;Atp5md-204;Taf5-201,Atp5md;Atp5md;Atp5md;Taf5,11733;11751;11742;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,10,226182,ENSMUSG00000025049,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4998,cg15679186,-0.0000851,0.0000135,-6.31581522,9.31E-10,loss,yes,0.00000551,0.0000229,0.240729086,0.809924222,pos,ns,-0.014135684,0.006703003,-2.10885818,0.035758673,neg,ns,1.446618604,0.00026442,0.000230516,1.147080552,0.252232868,pos,ns,0.862098585,Dlg1,Dlg1_Exon,16,31754831,31754880,31754831,31754832,50,-,CGAGGAGGCAATACTAGCTCTAGCCATGGCTCAGCAGGCCCAAAGCAGAA,"Exon (Dlg1-204/Dlg1, exon 1 of 23)",16,31663443,31875129,211687,1,Dlg1-206,91388,Dlg1-206;Dlg1-205;Dlg1-203;Dlg1-209;Dlg1-202;Dlg1-201;Dlg1-215;Dlg1-204,Dlg1;Dlg1;Dlg1;Dlg1;Dlg1;Dlg1;Dlg1;Dlg1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,8,13383,ENSMUSG00000022770,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5531,cg07298387,-0.00000769,0.000012,-0.641697406,0.521543859,loss,ns,-0.0000049,0.0000204,-0.240665149,0.809973735,neg,ns,-0.000714922,0.005962688,-0.119899335,0.904640558,neg,ns,0.043523945,-0.000126883,0.000205056,-0.618771992,0.536520986,neg,ns,0.596270564,Pbx3,Pbx3_threeUTR,2,34213384,34213433,34213384,34213385,50,-,CGTGTTCTACTCTGTTCTCGGAGAAGGTTCATCACATGTGTAGTAAATTC,3' UTR,2,34171457,34372038,200582,2,Pbx3-202,158605,Pbx3-202;Pbx3-201;Pbx3-210;Pbx3-206;Pbx3-207;Pbx3-209;Pbx3-204,Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,82,18516,ENSMUSG00000038718,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12607,cg06251539,0.000120334,0.0000107,11.25699738,7.09E-25,gain,yes,-0.00000437,0.0000182,-0.240621399,0.810007616,neg,ns,0.020310142,0.005320371,3.817430053,0.000162827,pos,ns,3.78827366,-0.000461189,0.000182967,-2.520612515,0.012216756,neg,ns,0.132075922,Vgll3,Vgll3_Exon,16,65815643,65815692,65815643,65815644,50,+,CGGAGGTGATGTATCACCCCCAGCCTTATGGAGCGTCCCAGTATCTGCCC,Promoter (<=1kb),16,65815257,65866368,51112,1,Vgll3-201,386,Vgll3-201;Vgll3-202,Vgll3;Vgll3,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,73569,ENSMUSG00000091243,conserved gene and region,16,65815241,65815677,437,*,437,52,0.71395881,0.935644584,0.118993135,4.86E-44,CpGisland,TRUE,U3,Pr-B
7280,cg18839250,-0.00000604,0.00000604,-0.999448732,0.318356854,loss,ns,0.00000247,0.0000103,0.240611376,0.810015378,pos,ns,0.0000862,0.003005739,0.028666842,0.977148748,pos,ns,0.01003932,-0.0000883,0.000103367,-0.854601704,0.393431634,neg,ns,0.925414147,Gm5267,Gm5267_Intergenic_upstream,1,41981773,41981822,41981773,41981774,50,-,CGGTTTTGATCAAAAGGATTCCAGATCTCACACTAAATTTAGCACCGCTG,Distal Intergenic,1,42103289,42104333,1045,1,Gm5267-201,-121516,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,15,383634,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19655,cg24966735,0.0000233,0.00000413,5.657093581,0.000000035,gain,yes,-0.00000169,0.00000701,-0.240607362,0.810018487,neg,ns,0.006087851,0.002053485,2.964643332,0.003265436,pos,ns,2.486058889,-0.000148614,0.0000706,-2.104441486,0.03614481,neg,ns,0.033956714,Klf12,Klf12_fiveUTR,14,100284517,100284566,100284565,100284566,50,+,TGCAAATGACTTACCCGGATCACATGATGCGCTAAATGTAGGGTGGGCCG,Promoter (<=1kb),14,100248609,100284528,35920,2,Klf12-203,0,Klf12-205;Klf12-204;Klf12-203,Klf12;Klf12;Klf12,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,6,11,16597,ENSMUSG00000072294,mapped to different genes,14,100284532,100284652,121,*,121,13,0.685950413,0.929669031,0.107438017,1.21E-10,CpGisland,TRUE,U1,Pr-A
18609,cg26072749,0.0000875,0.000013,6.723169016,8.55E-11,gain,yes,0.00000532,0.0000221,0.240586844,0.810034376,pos,ns,0.016063324,0.006476197,2.480363883,0.013655437,pos,ns,1.864694385,-0.000310078,0.000222716,-1.39225873,0.164841973,neg,ns,0.260712479,Hoxb4,Hoxb4_Exon,11,96317199,96317248,96317199,96317200,50,+,CGAATTTGTGTAAGGAATTTTGTGGTCACAAATTCGTATCTAGGGGAATA,Promoter (1-2kb),11,96318267,96321638,3372,1,Hoxb4-201,-1019,Hoxb4-201,Hoxb4,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,6,15412,ENSMUSG00000038692,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
23982,cg26740663,0.0000226,0.0000029,7.795727249,9.80E-14,gain,yes,-0.00000118,0.00000492,-0.240544228,0.81006738,neg,ns,0.004731269,0.001441494,3.282198683,0.001147605,pos,ns,2.9402077,-0.000123141,0.0000496,-2.484051202,0.013517644,neg,ns,0.018253986,Galnt2l,Galnt2l_Exon,8,121730859,121730908,121730907,121730908,50,+,GAAGTGGGTGTACAAGGGCGAGTGGACGCACGGATTCAAGGGGCGCTACG,"Exon (Jph3-201/Jph3, exon 1 of 5)",8,119910841,124345722,4434882,1,Galnt2l-201,1820018,Galnt2l-201;Jph3-203;Jph3-201;Jph3-202,Galnt2l;Jph3;Jph3;Jph3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,28,,NA,mapped to different genes,8,121730591,121731098,508,*,508,45,0.645669291,0.890499007,0.088582677,5.95E-32,CpGisland,TRUE,U13,Hc-P
6944,cg26718996,0.0000465,0.000006,7.748657738,1.34E-13,gain,yes,-0.00000245,0.0000102,-0.240522253,0.810084398,neg,ns,0.0089821,0.002987163,3.006900129,0.002855179,pos,ns,2.544366611,-0.000122361,0.000102728,-1.191116941,0.234518869,neg,ns,0.069910986,Tmem178b,Tmem178b_Exon,6,39873373,39873422,39873421,39873422,50,+,CAACTCCACCAACATGGGCCTCTGGAGGAAGTGCCACCGGCAGGGCTTCG,"Exon (Tmem178b-204/Tmem178b, exon 1 of 4)",6,39871461,40245772,374312,1,Tmem178b-204,1912,Tmem178b-204;Tmem178b-203,Tmem178b;Tmem178b,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,7,434008,ENSMUSG00000057716,conserved gene and region,6,39873410,39873478,69,*,69,11,0.695652174,1.338624339,0.15942029,4.47E-11,CpGisland,TRUE,U13,Hc-P
15324,cg21923252,-0.00000667,0.00000333,-2.002404207,0.046111963,loss,ns,0.00000136,0.00000566,0.240352822,0.810215615,pos,ns,-0.0052828,0.001658464,-3.185356038,0.001592903,neg,ns,2.797810703,0.0000688,0.000057,1.205559109,0.228906919,pos,ns,0.862638967,Cacna1i,Cacna1i_Exon,15,80356121,80356170,80356121,80356122,50,-,CGCTGCAGGTGATCACTCTGGAAGGCTGGGTGGAGATCATGTACTACGTG,"Exon (Cacna1i-202/Cacna1i, exon 8 of 37)",15,80287238,80398279,111042,1,Cacna1i-202,68883,Cacna1i-202;Cacna1i-205,Cacna1i;Cacna1i,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,11,239556,ENSMUSG00000022416,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19656,cg20818810,0.00000724,0.00000184,3.93312782,0.000103505,gain,ns,-0.000000751,0.00000313,-0.240226244,0.810313647,neg,ns,0.001152805,0.000915807,1.258784788,0.209055186,pos,ns,0.679739054,-0.0000489,0.0000315,-1.553289548,0.121374262,neg,ns,0.042293144,Klf12,Klf12_fiveUTR,14,100284534,100284583,100284582,100284583,50,+,GATCACATGATGCGCTAAATGTAGGGTGGGCCGGTGGGTGGAGGCTGCCG,Promoter (<=1kb),14,99870632,100284679,414048,2,Klf12-205,96,Klf12-205;Klf12-204;Klf12-203,Klf12;Klf12;Klf12,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,11,16597,ENSMUSG00000072294,mapped to different genes,14,100284532,100284652,121,*,121,13,0.685950413,0.929669031,0.107438017,1.21E-10,CpGisland,TRUE,U1,Pr-A
27615,cg23469509,-0.000101677,0.0000112,-9.047078104,1.65E-17,loss,yes,0.00000458,0.0000191,0.240078858,0.810427799,pos,ns,0.00356403,0.005593571,0.637165427,0.524487361,pos,ns,0.280264973,-0.000422893,0.000192362,-2.198418447,0.028658067,neg,ns,0.640958268,Atp1a2,Atp1a2_Exon,1,172280627,172280676,172280627,172280628,50,-,CGTTACCCTCTGATATGATGCCCACGCCTTTGGCAATGGCCTTGGCTGTG,"Exon (Atp1a2-201/Atp1a2, exon 14 of 23)",1,172271709,172298064,26356,2,Atp1a2-201,17388,Atp1a2-201;Atp1a2-203;Atp1a2-205;Atp1a2-202;Atp1a2-204;Igsf8-206;Igsf8-204,Atp1a2;Atp1a2;Atp1a2;Atp1a2;Atp1a2;Igsf8;Igsf8,0;0;-4149;0;17388;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,98660,ENSMUSG00000007097,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1212,cg08707617,-0.0000385,0.0000172,-2.236356449,0.026039554,loss,ns,0.00000701,0.0000292,0.240057509,0.810444334,pos,ns,0.051908207,0.008558364,6.065202352,3.83E-09,pos,ns,8.416547209,-0.000867704,0.000294321,-2.948151229,0.003439696,neg,ns,0.524487265,Bcor,Bcor_Intron,X,12067941,12067990,12067989,12067990,50,+,TTCAGGGCTTAATTACTCCTCCTTGATCCATGGGACTAGACACGACACCG,"Intron (Bcor-202/Bcor, intron 1 of 14)",20,12036740,12080553,43814,2,Bcor-202,12563,Bcor-202;Bcor-203;Bcor-204;Bcor-206;Bcor-201;Bcor-207;Bcor-205,Bcor;Bcor;Bcor;Bcor;Bcor;Bcor;Bcor,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,56,74,71458,ENSMUSG00000040363,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6443,cg24902299,-0.0000427,0.0000118,-3.624158445,0.000338702,loss,ns,-0.00000481,0.00002,-0.239908048,0.810560099,neg,ns,-0.006677581,0.005868129,-1.13794026,0.256024134,neg,ns,0.591719094,-0.000234437,0.000201804,-1.16170429,0.246249261,neg,ns,0.847550669,Tenm2,Tenm2_Intergenic_upstream,11,37255994,37256043,37256042,37256043,50,-,GTTCTAACCTGCCACAAATAATGATTTTTAAAAAGCCCCAGAAGAATGCG,Distal Intergenic,11,36944205,37235964,291760,2,Tenm2-207,-20079,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,9,84,23964,ENSMUSG00000049336,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
827,cg11948466,-0.00000292,0.00000217,-1.346484267,0.179130046,loss,ns,0.000000883,0.00000368,0.239676908,0.810739134,pos,ns,0.001592895,0.001079296,1.475865148,0.140995086,pos,ns,0.850796022,-0.0000531,0.0000371,-1.429946334,0.153739481,neg,ns,0.949184099,1810013L24Rik,1810013L24Rik_Exon,16,8855782,8855831,8855830,8855831,50,+,TCTTCTTCCTAGGTCTTAGTGGTGCAATGGCTAGTATAAGCGTGCGTTCG,"Exon (1810013L24Rik-201/1810013L24Rik, exon 4 of 4)",16,8830100,8858922,28823,1,1810013L24Rik-201,25682,1810013L24Rik-201,1810013L24Rik,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,18,19,69053,ENSMUSG00000022507,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
41,cg20128261,-0.00000664,0.00000168,-3.957347875,0.000094,loss,ns,0.000000683,0.00000285,0.239650239,0.810759792,pos,ns,-0.001934995,0.000834994,-2.317375471,0.021134392,neg,ns,1.675010237,0.0000287,0.0000287,0.998726456,0.318706149,pos,ns,0.977211854,Smtn,Smtn_Exon,11,3520815,3520864,3520863,3520864,50,+,CGGTAGAATTCCTGGATGTACGTGTACACGCACTTCCAGTCAGGCTCTCG,"Exon (Smtn-201/Smtn, exon 8 of 9)",11,3517523,3527937,10415,2,Smtn-201,7073,Selenom-202;Selenom-203;Selenom-201;Smtn-201;Smtn-204;Smtn-203;Smtn-208;Smtn-202;Smtn-210;Smtn-206,Selenom;Selenom;Selenom;Smtn;Smtn;Smtn;Smtn;Smtn;Smtn;Smtn,6131;6113;5948;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,6,29856,ENSMUSG00000020439,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9584,cg16118889,0.0000515,0.00000656,7.844740029,7.08E-14,gain,yes,-0.00000267,0.0000112,-0.239618623,0.810784282,neg,ns,0.003904195,0.003267238,1.194952954,0.233018805,pos,ns,0.632609029,-0.0000656,0.00011236,-0.584016507,0.559633921,neg,ns,0.085851281,Gm43517,Gm43517_Intron,12,49395151,49395200,49395151,49395152,50,+,CGGGTTAAACAAACAACTTGTACCCTGACCAAATCCGATTGTTAAAGTGC,"Intron (3110039M20Rik-201/3110039M20Rik-201, intron 2 of 2)",12,49385174,49394127,8954,1,Gm43517-201,9977,Gm43517-201,Gm43517,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,5,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
3357,cg06655030,-0.00000234,0.00000141,-1.660711607,0.097782422,loss,ns,0.000000573,0.00000239,0.239571796,0.810820555,pos,ns,-0.000185639,0.000700925,-0.264848658,0.791302063,neg,ns,0.101657702,0.0000461,0.0000241,1.913944977,0.0565478,pos,ns,0.988548484,Srrm2,Srrm2_Exon,17,23811800,23811849,23811800,23811801,50,+,CGCCCACGGTGTGCTAGGCGCTGCACAGACCATTCGGAAGACACGGTCCC,"Exon (Srrm2-203/Srrm2, exon 2 of 3)",17,23803187,23824736,21550,1,Srrm2-210,8613,Gm49911-201;Srrm2-206;Srrm2-210;Srrm2-201;Srrm2-212;Srrm2-211;Srrm2-208;Srrm2-203;Srrm2-207,Gm49911;Srrm2;Srrm2;Srrm2;Srrm2;Srrm2;Srrm2;Srrm2;Srrm2,1651;0;0;0;0;0;0;0;-51,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,13,75956,ENSMUSG00000039218,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10210,cg10467897,0.0000161,0.00000217,7.435013126,1.03E-12,gain,yes,-0.000000881,0.00000368,-0.239520391,0.810860374,neg,ns,0.001509807,0.001077729,1.400914769,0.162239781,pos,ns,0.789842648,-0.00000764,0.0000371,-0.20621875,0.836755411,neg,ns,0.046271504,Hoxa11,Hoxa11_Exon,6,52244850,52244899,52244850,52244851,50,+,CGTGATCCCGCCTTTTATAACAAAGTTTTGTTGGGGGAAACCTAAAGGCC,Promoter (<=1kb),6,52242106,52245810,3705,2,Hoxa11-201,911,Hoxa10-201;Hoxa10-204;Hoxa11-201;Hoxa11-202,Hoxa10;Hoxa10;Hoxa11;Hoxa11,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,15,18,15396,ENSMUSG00000038210,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
23537,cg01444045,-0.00000665,0.00000706,-0.941531531,0.347165655,loss,ns,0.00000287,0.000012,0.239467031,0.810901709,pos,ns,-0.010128878,0.003515547,-2.881166829,0.004238392,neg,ns,2.372798845,0.000513015,0.000120899,4.243324807,0.0000291,pos,ns,0.161847548,Sp8,Sp8_Promoter,12,118840884,118840933,118840884,118840885,50,-,CGAATGATTCTAAAGCACGCGATTTTGTTCGTGTTCACTGGGCCGAAATA,Promoter (5-6kb),12,118846329,118852576,6248,1,Sp8-201,-5445,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,27,29,320145,ENSMUSG00000048562,conserved gene and region,12,118840863,118841021,159,*,159,10,0.503144654,0.999371465,0.062893082,0.00000467,CpGisland,TRUE,U13,Hc-P
15219,cg12775921,0.00000889,0.00000254,3.494680033,0.000543807,gain,ns,0.00000103,0.00000432,0.239443844,0.81091967,pos,ns,0.002311442,0.001266079,1.825668816,0.068862106,pos,ns,1.1620197,-0.0000306,0.0000435,-0.702933216,0.482624908,neg,ns,0.040370598,Col12a1,Col12a1_Exon,9,79718763,79718812,79718811,79718812,50,-,AGGAGGTCTACTTTTGGGAACGTGTGCATACTTCGAGCATTCCTTCGGCG,Promoter (<=1kb),9,79712534,79718831,6298,2,Col12a1-203,19,Col12a1-201;Col12a1-202;Col12a1-206;Col12a1-203;Col12a1-205,Col12a1;Col12a1;Col12a1;Col12a1;Col12a1,-245;-43;-43;0;-269,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,12816,ENSMUSG00000032332,conserved gene but different region,9,79718425,79718981,557,*,557,52,0.666068223,0.871884407,0.093357271,4.56E-38,CpGisland,TRUE,U3,Pr-B
2939,cg01067793,-0.000000527,0.00000133,-0.395500056,0.692745909,loss,ns,-0.000000542,0.00000226,-0.23940282,0.81095145,neg,ns,0.002462706,0.000663419,3.712145039,0.000243589,pos,ns,3.61334208,-0.0000642,0.0000228,-2.81589604,0.005175798,neg,ns,0.961020556,Ehbp1,Ehbp1_Intron,11,22079090,22079139,22079090,22079091,50,+,CGATCAATGCATTTGATAAAGAATTAAGAAGAAAACTGTACATGTTATCA,"Intron (Ehbp1-201/Ehbp1, intron 14 of 23)",11,22005828,22285838,280011,2,Ehbp1-201,206699,Ehbp1-201;Ehbp1-202;Ehbp1-207,Ehbp1;Ehbp1;Ehbp1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,34,45,216565,ENSMUSG00000042302,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19101,cg18086697,0.0000112,0.00000293,3.822950938,0.000159384,gain,ns,0.00000119,0.00000497,0.239393657,0.810958548,pos,ns,0.004060301,0.00145601,2.788648513,0.005620035,pos,ns,2.250261012,-0.0000656,0.0000501,-1.309683174,0.1912728,neg,ns,0.0922483,Foxd1,Foxd1_threeUTR,13,98358902,98358951,98358950,98358951,50,-,TCTCCTCCTCCCAACTACAAAGTGTGGATTTGCTACAACTCATTAACCCG,3' UTR,13,98354242,98359305,5064,1,Foxd1-201,4660,Foxd1-201,Foxd1,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,4,15229,ENSMUSG00000078302,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
6116,cg01355478,-0.00000271,0.000007,-0.387486137,0.69866225,loss,ns,0.00000285,0.0000119,0.239393443,0.810958714,pos,ns,0.005830851,0.003482858,1.674156939,0.095108325,pos,ns,1.021781465,-0.000218176,0.000119775,-1.821544701,0.069487737,neg,ns,0.883173996,Tenm2,Tenm2_Intron,11,36102298,36102347,36102298,36102299,50,-,CGCCTGTCACTTGGTGCACATGTTGTGTGTATTCTCAGACTTTAATGAGC,"Intron (Tenm2-202/Tenm2, intron 15 of 30)",11,36006656,37235882,1229227,2,Tenm2-202,1133535,Tenm2-202;Tenm2-208;Tenm2-201,Tenm2;Tenm2;Tenm2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,47,84,23964,ENSMUSG00000049336,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3308,cg25751973,-0.00000463,0.00000374,-1.238374979,0.216514004,loss,ns,-0.00000152,0.00000635,-0.239255893,0.811065268,neg,ns,-0.002301314,0.001861755,-1.236099542,0.217357346,neg,ns,0.662825677,0.0000942,0.000064,1.471104831,0.142277101,pos,ns,0.916342726,Kcnma1,Kcnma1_threeUTR,14,23526530,23526579,23526578,23526579,50,-,ACTTACTTTCTGCCTCCATGTTTGTTAAAAGTCCCGCCGAATTTATTCCG,3' UTR,14,23289431,23803304,513874,2,Kcnma1-207,276725,Kcnma1-207;Kcnma1-210;Kcnma1-205;Kcnma1-201;Kcnma1-208;Kcnma1-209;Kcnma1-212;Kcnma1-204;Kcnma1-202;Kcnma1-211;Kcnma1-229;Kcnma1-234;Kcnma1-223;Kcnma1-214;Kcnma1-216;Kcnma1-219;Kcnma1-220;Kcnma1-224;Kcnma1-233;Kcnma1-236;Kcnma1-237;Kcnma1-213;Kcnma1-228;Kcnma1-203;Kcnma1-206;Kcnma1-221;Kcnma1-225;Kcnma1-226;Kcnma1-230;Kcnma1-235;Kcnma1-217;Kcnma1-238;Kcnma1-231;Kcnma1-218;Kcnma1-222;Kcnma1-232,Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,13,41,16531,ENSMUSG00000063142,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5962,cg01126232,-0.0000106,0.000015,-0.701490303,0.483523359,loss,ns,0.00000611,0.0000256,0.239218647,0.811094122,pos,ns,0.013126235,0.007486548,1.753309437,0.080537258,pos,ns,1.094003159,-0.000463736,0.000257462,-1.801183985,0.072645566,neg,ns,0.492419822,Matr3,Matr3_Exon,18,35572880,35572929,35572880,35572881,50,-,CGAAGGGTTATCCCCATCTGTGCTCTATATGTGATTTGCCAGTTCATTCT,"Exon (Matr3-205/Matr3, exon 2 of 3)",18,35562138,35577876,15739,1,Matr3-205,10742,Matr3-205;Matr3-211;Matr3-201;Matr3-218;Matr3-210;Matr3-207;Matr3-209;Matr3-213;Matr3-214;Matr3-215;Matr3-202;Matr3-217;Matr3-208;Matr3-206;Matr3-204;Matr3-212;Matr3-216;Snhg4-201;Snhg4-203;Snhg4-207;Snhg4-208;Snhg4-205;Snhg4-206;Snhg4-204,Matr3;Matr3;Matr3;Matr3;Matr3;Matr3;Matr3;Matr3;Matr3;Matr3;Matr3;Matr3;Matr3;Matr3;Matr3;Matr3;Matr3;Snhg4;Snhg4;Snhg4;Snhg4;Snhg4;Snhg4;Snhg4,0;10734;0;10688;0;0;0;0;0;0;0;0;0;10197;0;0;-4972;19476;0;0;19468;19467;0;19442,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,5,17184,ENSMUSG00000037236,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24270,cg22210012,-0.0000187,0.00000437,-4.289279935,0.000024,loss,ns,0.00000177,0.00000742,0.239213849,0.811097839,pos,ns,-0.004194382,0.002173829,-1.929489937,0.054582476,neg,ns,1.26294677,0.0000152,0.0000748,0.203249227,0.839073583,pos,ns,0.950319695,Pou3f1,Pou3f1_Intron,4,124455721,124455770,124455721,124455722,50,+,CGCTCACAACATATGTCATTACTCATTAAGGGACTTTTTCTGGATTATGG,"Intron (1700057H15Rik-202/1700057H15Rik-202, intron 2 of 3)",4,124656807,124660655,3849,1,Pou3f1-201,-201037,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,43,85,18991,ENSMUSG00000090125,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12271,cg16036718,0.0000164,0.00000322,5.090552752,0.000000621,gain,yes,-0.00000131,0.00000547,-0.239171576,0.811130587,neg,ns,0.004185118,0.001602484,2.611643724,0.009449274,pos,ns,2.024601538,-0.0000481,0.0000551,-0.873616967,0.383003118,neg,ns,0.090723535,Otud7a,Otud7a_threeUTR,7,63758818,63758867,63758818,63758819,50,+,CGTGTACGTGTTTGGTCAAACGTTCCTAATGGTGCCTGAACCTACACTGA,3' UTR,7,63444751,63759028,314278,1,Otud7a-201,314067,Otud7a-201;Otud7a-204;Otud7a-203,Otud7a;Otud7a;Otud7a,0;108003;4106,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,4,170711,ENSMUSG00000033510,conserved gene and region,7,63758789,63758839,51,*,51,7,0.647058824,1.322222222,0.137254902,0.00000149,CpGisland,TRUE,NA,NRS
15178,cg04211240,0.0000395,0.00000969,4.076671567,0.0000581,gain,ns,-0.00000394,0.0000165,-0.239025986,0.811243377,neg,ns,0.001207806,0.004823939,0.250377473,0.802461302,pos,ns,0.095575902,0.000232275,0.000165895,1.400133157,0.162473463,pos,ns,0.245347726,Polg,Polg_Intron,7,79510059,79510108,79510107,79510108,50,-,GTTCAAGGGGATACTGGATTTGTGAAAAGCTCCAAACCGCCTTTCCCACG,"Intron (Mir9-3hg-205/Mir9-3hg-205, intron 1 of 1)",7,79446231,79466362,20132,2,Polg-201,-43746,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,16,18975,ENSMUSG00000039176,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
23417,cg10662089,-0.00000355,0.00000194,-1.829574739,0.068273871,loss,ns,-0.000000786,0.00000329,-0.238625601,0.811553578,neg,ns,0.001213366,0.000964688,1.257780762,0.209417679,pos,ns,0.678986658,-0.0000124,0.0000332,-0.37234291,0.709891971,neg,ns,0.045448364,Sp4,Sp4_fiveUTR,12,118301339,118301388,118301387,118301388,50,-,GAGGAGGCTGTAGCTGGCACAGGCTCTGCCTCTTTTTCCGCGAATGGCCG,Promoter (<=1kb),12,118234933,118301370,66438,2,Sp4-201,0,Sp4-201;Sp4-203;Sp4-202,Sp4;Sp4;Sp4,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,14,20688,ENSMUSG00000025323,conserved gene and region,12,118301295,118301730,436,*,436,58,0.763761468,0.913187924,0.133027523,2.74E-52,CpGisland,TRUE,U1,Pr-A
23201,cg05434807,-0.0000159,0.00000485,-3.279422422,0.001158569,loss,ns,-0.00000196,0.00000824,-0.238578102,0.81159038,neg,ns,-0.00565679,0.002412908,-2.344386788,0.019689363,neg,ns,1.705768325,0.000250817,0.000083,3.022626891,0.002714976,pos,ns,0.817396995,Rnf220,Rnf220_Intron,4,117434461,117434510,117434509,117434510,50,+,AGAATTAAAGGCATGGTTCCCACTTCCTAACGATGCTTTTACAGAAACCG,"Intron (Rnf220-201/Rnf220, intron 2 of 14)",4,117271463,117497052,225590,2,Rnf220-201,62542,Rnf220-201;Rnf220-207,Rnf220;Rnf220,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21096,cg04663705,0.0000261,0.00000503,5.178555081,0.000000403,gain,yes,0.00000204,0.00000855,0.23848135,0.811665344,pos,ns,0.004034412,0.002504509,1.610859701,0.108227995,pos,ns,0.965660388,-0.000104967,0.0000861,-1.218710926,0.223880533,neg,ns,0.108093961,Barhl2,Barhl2_Intron,5,106454539,106454588,106454539,106454540,50,-,CGACAGAATTAGGGTGGCTGAAACCGTATGTAATGAGACAGAAAATTATG,"Intron (Barhl2-201/Barhl2, intron 2 of 2)",5,106452523,106458166,5644,2,Barhl2-201,3578,Barhl2-201,Barhl2,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,27,104382,ENSMUSG00000034384,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
9095,cg27371087,-0.0000042,0.00000116,-3.626542084,0.000335719,loss,ns,0.000000469,0.00000197,0.238347322,0.811769194,pos,ns,0.000581111,0.000576224,1.008481333,0.314009949,pos,ns,0.503056592,-0.0000367,0.0000198,-1.851894646,0.064991603,neg,ns,0.042268627,Bicral,Bicral_fiveUTR,17,46858432,46858481,46858480,46858481,50,+,TCACCGTCATGAAAAAGCAGTGCCTTGTCAACGGGGTTTCTGCGCCATCG,Promoter (<=1kb),17,46825795,46858482,32688,2,Bicral-203,1,Bicral-203,Bicral,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,4,210982,ENSMUSG00000036568,conserved gene and region,17,46858436,46858691,256,*,256,44,0.76953125,1.164598842,0.171875,1.00E-45,CpGisland,TRUE,U1,Pr-A
26543,cg12661492,-0.0000333,0.00000593,-5.613766031,0.000000044,loss,yes,0.0000024,0.0000101,0.238322343,0.811788549,pos,ns,-0.007767872,0.002949843,-2.633316967,0.008879487,neg,ns,2.051612127,0.000308189,0.000101445,3.037996306,0.002584091,pos,ns,0.817736795,Casz1,Casz1_Intron,4,148902237,148902286,148902237,148902238,50,+,CGGGGCGACTGTCTCAAGGTAAAGGAATTTAATTTATTTGGGACAAGGCT,"Intron (Casz1-201/Casz1, intron 4 of 15)",4,148804429,148945129,140701,1,Casz1-201,97808,Casz1-201;Casz1-202;Casz1-206,Casz1;Casz1;Casz1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,94,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
950,cg07619251,6.88E-08,0.00000131,0.052639097,0.958053369,gain,ns,0.000000529,0.00000222,0.238290875,0.811812932,pos,ns,-0.000435964,0.000650732,-0.66995901,0.503382651,neg,ns,0.298101757,0.0000121,0.0000224,0.540494573,0.589244113,pos,ns,0.964706999,Taf3,Taf3_Intron,2,9945420,9945469,9945468,9945469,50,+,TCCATTTTTCCAGGACACCAGCAGTGCGGCCTTGCAAAAAATGAAAATCG,"Intron (Taf3-201/Taf3, intron 3 of 6)",2,9914552,10048596,134045,2,Taf3-201,103127,Taf3-201;Taf3-204;Taf3-205,Taf3;Taf3;Taf3,0;0;-3669,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,7,209361,ENSMUSG00000025782,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
885,cg24464567,-0.0000474,0.0000101,-4.717077632,0.00000362,loss,ns,-0.00000407,0.0000171,-0.238252693,0.811842518,neg,ns,-0.011346623,0.00500518,-2.266976216,0.024080233,neg,ns,1.618339314,-0.000118471,0.000172128,-0.688274998,0.491794337,neg,ns,0.749989086,Gm13221,Gm13221_Intron,2,9388182,9388231,9388182,9388183,50,-,CGAGGAAGCTCTTTAAAGATGAATCATTTTCATAAATGAGTGCAGAGGGA,"Intron (Gm13219-202/Gm13219-202, intron 2 of 3)",2,9270080,9270509,430,2,Gm13221-201,-117722,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,3,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7073,cg05710193,-0.00001,0.00000273,-3.686012426,0.000268823,loss,ns,0.0000011,0.00000463,0.238142493,0.811927909,pos,ns,0.000340388,0.001356792,0.250876821,0.802075547,pos,ns,0.095784724,-0.0000147,0.0000467,-0.314626409,0.753256977,neg,ns,0.945519572,Zfpm2,Zfpm2_Intron,15,40810492,40810541,40810492,40810493,50,-,CGGATCATCATTCCGTTTATCACAGTGCACAGGCTGGCCGTTAAGTAAAT,"Intron (Zfpm2-202/Zfpm2, intron 3 of 3)",15,40655035,40872723,217689,1,Zfpm2-202,155457,Zfpm2-202;Zfpm2-201;Zfpm2-203,Zfpm2;Zfpm2;Zfpm2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,41,22762,ENSMUSG00000022306,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19729,cg15637759,-0.00000418,0.00000357,-1.170331525,0.242766495,loss,ns,-0.00000144,0.00000607,-0.237935919,0.812087983,neg,ns,-0.002193352,0.001778082,-1.233549758,0.218305187,neg,ns,0.660935946,0.0000213,0.0000611,0.348982452,0.727339399,pos,ns,0.905374673,Scn8a,Scn8a_Exon,15,100957546,100957595,100957546,100957547,50,-,CGGGACCCATGGAACTGGTTAGATTTCAGTGTCATCATGATGGCGTAAGT,"Exon (Scn8a-212/Scn8a, exon 5 of 15)",15,100870645,101011064,140420,1,Scn8a-212,86901,Scn8a-212;Scn8a-201;Scn8a-204;Scn8a-213;Scn8a-203;Scn8a-205;Scn8a-208;Scn8a-210;Scn8a-216;Scn8a-215;Scn8a-219,Scn8a;Scn8a;Scn8a;Scn8a;Scn8a;Scn8a;Scn8a;Scn8a;Scn8a;Scn8a;Scn8a,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,18,24,20273,ENSMUSG00000023033,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13709,cg22544164,0.0000268,0.0000047,5.716812908,2.55E-08,gain,yes,-0.0000019,0.00000798,-0.237878023,0.812132849,neg,ns,0.004507033,0.002336855,1.928674755,0.054684096,pos,ns,1.262138959,-0.0000983,0.0000804,-1.22336798,0.222119844,neg,ns,0.049985981,Tle1,Tle1_Exon,4,72199292,72199341,72199292,72199293,50,-,CGCACCTGTGATACTGCGCCTGCAGGAACTGGAATTCCTCTTTAATCCGG,"Exon (Tle1-203/Tle1, exon 2 of 20)",4,72117142,72200919,83778,2,Tle1-203,1578,Tle1-203;Tle1-202;Tle1-204;Tle1-207;Tle1-201;Tle1-205;Tle1-209;Tle1-208,Tle1;Tle1;Tle1;Tle1;Tle1;Tle1;Tle1;Tle1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,20,21885,ENSMUSG00000008305,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
17623,cg08909367,0.0000148,0.0000106,1.397532999,0.163252682,gain,ns,-0.00000428,0.000018,-0.237813985,0.812182474,neg,ns,-0.004063852,0.005276363,-0.770199612,0.44176803,neg,ns,0.354805717,-0.0000136,0.000181454,-0.074822533,0.940404173,neg,ns,0.84251009,Olig1,Olig1_Intron,16,91293063,91293112,91293063,91293064,50,-,CGTAATGGCCTGATTTAATCACAAAGGCAGAATTAAATTCAGATGGCAAC,"Intron (Gm15966-209/Gm15966-209, intron 1 of 2)",16,91269772,91271933,2162,1,Olig1-201,23340,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,9,50914,ENSMUSG00000046160,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25706,cg12860679,0.000000213,0.00000298,0.07130378,0.943201965,gain,ns,0.0000012,0.00000507,0.237640439,0.812316965,pos,ns,0.00091722,0.001484986,0.617662098,0.537251557,pos,ns,0.269822317,-0.0000236,0.0000511,-0.462779308,0.643847244,neg,ns,0.934502218,Nek7,Nek7_Intron,1,138499595,138499644,138499643,138499644,50,-,GCAGAGTGTGTGTGAAACACGCTAGTCCATGCTGTGCTACTCAGTGAGCG,"Intron (Nek7-202/Nek7, intron 8 of 9)",1,138482875,138619749,136875,2,Nek7-202,120105,Nek7-202;Nek7-203;Nek7-201,Nek7;Nek7;Nek7,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,9,59125,ENSMUSG00000026393,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10754,cg14963014,0.0000314,0.00000291,10.79498402,2.84E-23,gain,yes,-0.00000117,0.00000494,-0.237621437,0.812331691,neg,ns,-0.0011904,0.001446593,-0.822898942,0.411198013,neg,ns,0.385948992,0.00000289,0.0000497,0.058026757,0.953764701,pos,ns,0.067501669,Jph4,Jph4_Exon,14,55115045,55115094,55115045,55115046,50,-,CGCTCCACGCCCAGCCCTTCGCGCTTGCCCTGCTGCCAGTGGCCCTGGTA,"Exon (Jph4-201/Jph4, exon 2 of 6)",14,55106826,55116935,10110,2,Jph4-201,1841,Jph4-201;Jph4-202;Jph4-203;Jph4-204,Jph4;Jph4;Jph4;Jph4,0;0;-4487;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,11,319984,ENSMUSG00000022208,conserved gene and region,14,55114804,55115549,746,*,746,72,0.71849866,0.747869674,0.096514745,1.44E-53,CpGisland,TRUE,U3,Pr-B
2610,cg23017421,-0.00000481,0.00000201,-2.388196995,0.017529613,loss,ns,0.000000811,0.00000342,0.237324403,0.812561895,pos,ns,0.000240831,0.001001483,0.240474427,0.810121436,pos,ns,0.091449876,-0.000000634,0.0000344,-0.018404178,0.985328259,neg,ns,0.937291704,Aftph,Aftph_Exon,11,20698300,20698349,20698300,20698301,50,-,CGGAGAGACGTACCATCTAAAGGGTTAGTAAGGCCACTGCTACTCCAGTC,"Exon (Aftph-205/Aftph, exon 6 of 9)",11,20685084,20727607,42524,2,Aftph-205,29258,Aftph-205;Aftph-201;Aftph-208;Aftph-209;Aftph-207;Aftph-206;Aftph-202,Aftph;Aftph;Aftph;Aftph;Aftph;Aftph;Aftph,0;0;0;0;0;0;13901,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,4,216549,ENSMUSG00000049659,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26150,cg24679500,-0.0000186,0.00000229,-8.131794187,1.03E-14,loss,yes,-0.000000924,0.0000039,-0.23726264,0.812609764,neg,ns,-0.00063228,0.001141252,-0.554023388,0.579962253,neg,ns,0.236600272,0.00000288,0.0000392,0.073332608,0.941588738,pos,ns,0.951963263,Lmo4,Lmo4_Intron,3,144196128,144196177,144196176,144196177,50,+,AAGAGTTCAATCAAAACTCCATTTCAAAACTAATTAGTCTGAGATCCACG,"Intron (Lmo4-203/Lmo4, intron 2 of 4)",3,144188530,144202396,13867,2,Lmo4-203,6219,Lmo4-203;Lmo4-201;Lmo4-202;Lmo4-207;Lmo4-206;Lmo4-208;Lmo4-205,Lmo4;Lmo4;Lmo4;Lmo4;Lmo4;Lmo4;Lmo4,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,54,16911,ENSMUSG00000028266,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6436,cg06256346,0.0000454,0.00000607,7.467723733,8.34E-13,gain,yes,0.00000245,0.0000103,0.237174154,0.812678345,pos,ns,0.009639858,0.003023028,3.188808372,0.001574605,pos,ns,2.802828332,-0.000123138,0.000103962,-1.184457823,0.2371392,neg,ns,0.102518689,Grhl2,Grhl2_fiveUTR,15,37233378,37233427,37233426,37233427,50,-,GGATCAAACATGTCACAAGAGTCGGACAAGTAAGTGGATCACACGCGCCG,Promoter (<=1kb),15,37233036,37333647,100612,1,Grhl2-203,342,Grhl2-203;Grhl2-201;Grhl2-204,Grhl2;Grhl2;Grhl2,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,6,8,252973,ENSMUSG00000022286,conserved gene and region,15,37233368,37233440,73,*,73,9,0.602739726,1.383157895,0.123287671,5.59E-08,CpGisland,TRUE,NA,NRS
13179,cg10353436,-0.00000479,0.00000116,-4.126083506,0.0000475,loss,ns,0.000000467,0.00000197,0.237018217,0.812799208,pos,ns,0.0000601,0.000577215,0.104051626,0.917195664,pos,ns,0.037538007,0.00000244,0.0000199,0.122884869,0.902277896,pos,ns,0.032778132,Eif4a1,Eif4a1_fiveUTR,11,69672272,69672321,69672320,69672321,50,-,TTCTTACCGGGAATCCTGGCTCGCAGACATGATCCTTAGAAACTAGGGCG,Promoter (<=1kb),11,69666936,69672317,5382,2,Eif4a1-204,0,Eif4a1-204;Eif4a1-213;Eif4a1-202;Eif4a1-211;Eif4a1-208;Eif4a1-206;Eif4a1-201;Eif4a1-207;Eif4a1-209;Eif4a1-210;Eif4a1-203;Eif4a1-212;Eif4a1-205;Senp3-201;Senp3-203;Senp3-202;Senp3-209;Senp3-206;Senp3-208;Senp3-207;Senp3-205,Eif4a1;Eif4a1;Eif4a1;Eif4a1;Eif4a1;Eif4a1;Eif4a1;Eif4a1;Eif4a1;Eif4a1;Eif4a1;Eif4a1;Eif4a1;Senp3;Senp3;Senp3;Senp3;Senp3;Senp3;Senp3;Senp3,0;0;0;-4035;-4209;-3983;0;0;-1389;0;-542;-1050;-822;0;0;0;0;0;2122;4626;5692,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,1,13681,ENSMUSG00000059796,mapped to different genes,11,69672279,69672457,179,*,179,18,0.597765363,1.148253742,0.100558659,4.35E-14,CpGisland,TRUE,U1,Pr-A
20111,cg08995424,0.0000173,0.00000547,3.165453331,0.001702281,gain,ns,-0.0000022,0.00000929,-0.236979286,0.812829384,neg,ns,0.006263382,0.002720582,2.302220966,0.021985105,pos,ns,1.657871451,-0.000248242,0.0000936,-2.653272715,0.008382328,neg,ns,0.065937874,Atp5g2,Atp5g2_fiveUTR,15,102672080,102672129,102672080,102672081,50,+,CGGCTGTAAATAAAGGCAAATCCGCCACTCTCTGAGGGGCCGTTTGTCCT,Promoter (<=1kb),15,102665801,102672352,6552,2,Atp5g2-203,223,Atp5g2-202;Atp5g2-201;Atp5g2-204;Atp5g2-203,Atp5g2;Atp5g2;Atp5g2;Atp5g2,-953;-4331;-4337;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,8,18,67942,ENSMUSG00000062683,mapped to different genes,15,102672078,102672489,412,*,412,37,0.621359223,0.940117176,0.089805825,1.33E-26,CpGisland,TRUE,U1,Pr-A
18190,cg21037776,0.00000661,0.00000346,1.908675902,0.057227249,gain,ns,0.00000139,0.00000588,0.236868562,0.812915207,pos,ns,0.000669181,0.001722468,0.388501583,0.697911561,pos,ns,0.156199607,0.0000438,0.0000592,0.739971328,0.45987741,pos,ns,0.969472498,Cacna1g,Cacna1g_Exon,11,94423693,94423742,94423741,94423742,50,-,GCCGGAAGCAATTACATCGTCCAGCATTAGATCTAAAAGAACGAAACACG,"Exon (Cacna1g-202/Cacna1g, exon 26 of 36)",11,94408391,94474100,65710,2,Cacna1g-202,50358,Cacna1g-202;Cacna1g-203;Cacna1g-205;Cacna1g-206;Cacna1g-207;Cacna1g-208;Cacna1g-209;Cacna1g-210;Cacna1g-211;Cacna1g-201;Cacna1g-204;Cacna1g-214;Cacna1g-212;Cacna1g-216,Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g,0;0;0;0;0;0;0;0;0;0;0;0;2720;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,18,12291,ENSMUSG00000020866,conserved gene but different region,11,94423663,94423795,133,*,133,10,0.571428571,0.921690922,0.07518797,0.000000942,CpGisland,TRUE,U11,Tr-P
21021,cg12499452,0.0000515,0.00000888,5.798574601,1.65E-08,gain,yes,-0.00000357,0.0000151,-0.236752338,0.813005296,neg,ns,0.008414329,0.004419266,1.904010409,0.057834549,pos,ns,1.23781265,-0.000210449,0.000151978,-1.384730844,0.167130584,neg,ns,0.631121665,Vrk1,Vrk1_Intergenic_downstream,12,106081106,106081155,106081106,106081107,50,-,CGTGAAAAAACTGGACTGACATTTACAGGCACAGCAGGGAGACACTTGAC,Distal Intergenic,12,106030717,106075409,44693,1,Vrk1-204,50438,Vrk1-203,Vrk1,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,29,37,22367,ENSMUSG00000021115,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10980,cg23494270,-0.00000482,0.00000212,-2.276620606,0.023490302,loss,ns,0.000000851,0.0000036,0.236499616,0.813201196,pos,ns,0.000308692,0.001054392,0.292767525,0.769895717,pos,ns,0.113568096,0.00000804,0.0000363,0.22167322,0.824714232,pos,ns,0.957673863,Gm5183,Gm5183_Intergenic_upstream,12,55983655,55983704,55983655,55983656,50,+,CGGACCACACATAATTGAATCATGTTCAATAGAAGGCCATTACAAAACCG,Distal Intergenic,12,56050533,56051161,629,1,Gm5183-201,-66829,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,2,382600,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7448,cg16966998,0.000000251,0.00000172,0.145782305,0.884187992,gain,ns,-0.000000692,0.00000293,-0.236449186,0.813240289,neg,ns,-0.000953283,0.000857821,-1.111284384,0.2673071,neg,ns,0.572989506,0.0000225,0.0000295,0.763124907,0.44596924,pos,ns,0.957559571,Grik4,Grik4_Exon,9,42687928,42687977,42687928,42687929,50,+,CGTACTGGTTTCTGCAGTCTCGTACTCGCTGTCTCTGAGAAGCTCAAAGA,"Exon (Grik4-202/Grik4, exon 4 of 21)",9,42518135,42944493,426359,2,Grik4-202,256516,Grik4-202;Grik4-201,Grik4;Grik4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,8,110637,ENSMUSG00000032017,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10746,cg13754878,-0.0000146,0.00000703,-2.072482152,0.039046765,loss,ns,-0.00000282,0.0000119,-0.236414538,0.813267148,neg,ns,-0.009988581,0.00350002,-2.853863646,0.004609891,neg,ns,2.336309357,0.0000556,0.000120365,0.461995212,0.644408807,pos,ns,0.909749579,Thtpa,Thtpa_threeUTR,14,55097717,55097766,55097717,55097718,50,-,CGCTAAGCAGCCTCCATTGATTTCCGCTCGTGTTTATAGGATTTCCACTT,3' UTR,14,55094784,55098986,4203,1,Thtpa-201,2933,Ap1g2-209;Ap1g2-207;Ap1g2-203;Ap1g2-202;Ap1g2-201;Ap1g2-211;Ap1g2-204;Ap1g2-206;Ap1g2-210;Thtpa-201,Ap1g2;Ap1g2;Ap1g2;Ap1g2;Ap1g2;Ap1g2;Ap1g2;Ap1g2;Ap1g2;Thtpa,0;1622;0;0;0;0;0;6744;7125;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,4,105663,ENSMUSG00000045691,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23045,cg18406787,0.0000865,0.0000111,7.818941457,8.40E-14,gain,yes,0.00000444,0.0000188,0.236297487,0.813357888,pos,ns,0.013966148,0.005508198,2.535520492,0.011719138,pos,ns,1.931104334,-0.00026491,0.000189426,-1.398483007,0.162967655,neg,ns,0.45957092,Ptprn2,Ptprn2_Intron,12,117160677,117160726,117160677,117160678,50,-,CGGAGCAGAAAATTACTAATAGAAGAGAGATAATGAATAGGCCGGCCAGG,"Intron (Ptprn2-204/Ptprn2, intron 12 of 22)",12,116485729,117276849,791121,1,Ptprn2-204,674948,Ptprn2-204;Ptprn2-201,Ptprn2;Ptprn2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,5,19276,ENSMUSG00000056553,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
27726,cg06455216,-0.000000803,0.00000549,-0.146358435,0.883733567,loss,ns,0.0000022,0.00000933,0.236135233,0.813483674,pos,ns,0.014080463,0.002732112,5.153691648,0.000000456,pos,ns,6.341368577,-0.000734498,0.000094,-7.817380267,8.49E-14,neg,yes,0.9443959,Cdc42bpa,Cdc42bpa_threeUTR,1,180024654,180024703,180024702,180024703,50,-,TAACTTACGCCCTGGGTGTTGCCTGTCAACAGTTTCCTGGTGGCTCACCG,3' UTR,1,179960472,180163156,202685,1,Cdc42bpa-203,64182,Cdc42bpa-203;Cdc42bpa-204;Cdc42bpa-208;Cdc42bpa-201;Cdc42bpa-202;Cdc42bpa-218;Cdc42bpa-213;Cdc42bpa-206,Cdc42bpa;Cdc42bpa;Cdc42bpa;Cdc42bpa;Cdc42bpa;Cdc42bpa;Cdc42bpa;Cdc42bpa,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,10,226751,ENSMUSG00000026490,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
320,cg12092187,-0.000140102,0.0000181,-7.731765203,1.49E-13,loss,yes,0.00000727,0.0000308,0.236118131,0.813496931,pos,ns,-0.017105782,0.009018652,-1.896711612,0.058795412,neg,ns,1.230656562,0.000393596,0.000310151,1.269048816,0.205375644,pos,ns,0.746024026,Klhl29,Klhl29_Exon,12,5102642,5102691,5102642,5102643,50,-,CGTCCTACAAAGGAACAGACCCGACCACAGCTGGAAGGAAGGCAAACCTT,"Exon (Klhl29-201/Klhl29, exon 6 of 14)",12,5077472,5375682,298211,2,Klhl29-201,272991,Klhl29-201;Klhl29-202,Klhl29;Klhl29,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,23,208439,ENSMUSG00000020627,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7667,cg19090691,0.0000448,0.00000422,10.61445503,1.18E-22,gain,yes,0.00000169,0.00000717,0.235917459,0.813652508,pos,ns,0.002673123,0.002101503,1.272005163,0.204324652,pos,ns,0.689679233,0.0000866,0.0000723,1.198794685,0.23152337,pos,ns,0.100752246,Nkx2-3,Nkx2-3_Intergenic_downstream,19,43616712,43616761,43616760,43616761,50,-,TGCTTCTCAGAGCGGGGGCTTTGTGCAGCAGTCTGCTCAACAGAGGGACG,Downstream (<1kb),19,43612325,43615892,3568,1,Nkx2-3-201,4436,Nkx2-3-201,Nkx2-3,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,5,6,18089,ENSMUSG00000044220,conserved gene and region,19,43616270,43616905,636,*,636,57,0.682389937,0.781074268,0.089622642,1.32E-40,CpGisland,TRUE,U13,Hc-P
4007,cg08852769,-0.000013,0.00000668,-1.949846142,0.052095739,loss,ns,0.00000268,0.0000114,0.23578603,0.813754405,pos,ns,0.000171351,0.003326258,0.051514691,0.958948573,pos,ns,0.018204683,0.00000688,0.00011439,0.060107607,0.952108662,pos,ns,0.878140717,Slmap,Slmap_threeUTR,14,26416208,26416257,26416256,26416257,50,+,TCTACCACAATGGACCGAAACACCAAAACAGGAAAGCCAGGAATAGGCCG,3' UTR,14,26413168,26534931,121764,2,Slmap-203,118674,Slmap-203;Slmap-205;Slmap-215;Slmap-201;Slmap-202;Slmap-204;Slmap-212;Slmap-213,Slmap;Slmap;Slmap;Slmap;Slmap;Slmap;Slmap;Slmap,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,7,83997,ENSMUSG00000021870,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22098,cg25613088,-0.0000195,0.00000354,-5.507341915,7.66E-08,loss,yes,-0.00000142,0.00000601,-0.235413346,0.814043366,neg,ns,0.001527731,0.001762004,0.867041273,0.386590014,pos,ns,0.412749369,0.0000701,0.0000606,1.156102717,0.24852934,pos,ns,0.813289211,Tmie,Tmie_Exon,9,110870643,110870692,110870643,110870644,50,+,CGAAGAGCGAAAAGATGCCCACCACGTGCCACAGGCGCATGTCCCAGAAC,"Exon (Tmie-201/Tmie, exon 4 of 6)",9,110865711,110880113,14403,2,Tmie-201,9421,Tmie-201;Tmie-202;Tmie-203,Tmie;Tmie;Tmie,0;8613;5329,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,20776,ENSMUSG00000049555,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20845,cg27531402,0.00000762,0.00000299,2.548667319,0.011295382,gain,ns,-0.00000119,0.00000508,-0.235174342,0.814228692,neg,ns,0.000429629,0.001488117,0.288706319,0.772999082,pos,ns,0.111821022,0.0000112,0.0000512,0.219803761,0.826168658,pos,ns,0.042985228,Pax6,Pax6_Exon,2,105660491,105660540,105660539,105660540,50,+,TCTGTCGGGTTTGTAATGTAATTTGTAATTACTGCCCTTCATGTGGTCCG,Promoter (8-9kb),2,105668900,105697364,28465,1,Pax6-206,-8360,NA,NA,NA,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,31,78,18508,ENSMUSG00000027168,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
608,cg11863574,-0.00000276,0.00000103,-2.677682945,0.007808295,loss,ns,0.000000412,0.00000175,0.235139031,0.814256074,pos,ns,-0.0000609,0.000513671,-0.118517323,0.905734529,neg,ns,0.042999075,0.00000111,0.0000177,0.063111959,0.949718026,pos,ns,0.03824884,Cnksr3,Cnksr3_Exon,10,7211625,7211674,7211625,7211626,50,-,CGCGCACCTCTAGTCCAGTCCACCACTTGTTTGGGGCTCCACTTGGTCAC,Promoter (<=1kb),10,7119063,7212237,93175,2,Cnksr3-201,563,Cnksr3-201,Cnksr3,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,215748,ENSMUSG00000015202,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
27257,cg09690399,-0.00000253,0.00000688,-0.368151242,0.713011721,loss,ns,0.00000275,0.0000117,0.23509728,0.814288449,pos,ns,-0.000346374,0.003424373,-0.101149631,0.919497069,neg,ns,0.036449651,-0.0000626,0.000117764,-0.531346977,0.595558867,neg,ns,0.697899457,Dnm3,Dnm3_Exon,1,162217829,162217878,162217877,162217878,50,+,ATCCTGCTCCGTCGCCCCAGTGTTCAGACTACCTGTTCAGGACAATGCCG,"Exon (Dnm3os-202/Dnm3os-202, exon 1 of 1)",1,161982453,162295636,313184,2,Dnm3-203,77758,Dnm3-203;Dnm3-202;Dnm3-201;Dnm3-205,Dnm3;Dnm3;Dnm3;Dnm3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,6,103967,ENSMUSG00000040265,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13548,cg27169779,-0.00000465,0.00000182,-2.559420894,0.010958989,loss,ns,-0.000000726,0.00000309,-0.235016392,0.814351173,neg,ns,-0.000653595,0.000905131,-0.72209919,0.470777833,neg,ns,0.327183995,0.0000347,0.0000311,1.114883871,0.265763749,pos,ns,0.944542002,Dync1i2,Dync1i2_Intron,2,71244917,71244966,71244917,71244918,50,+,CGCCTCCTCAGCAGGGTCACTGAGATCACTAGCTTTTCTTGAAATGGCCA,"Intron (Dync1i2-207/Dync1i2, intron 6 of 16)",2,71211706,71263298,51593,1,Dync1i2-207,33211,Dync1i2-207;Dync1i2-205;Dync1i2-206;Dync1i2-204;Dync1i2-211;Dync1i2-201;Dync1i2-208;Dync1i2-202;Dync1i2-203;Dync1i2-209,Dync1i2;Dync1i2;Dync1i2;Dync1i2;Dync1i2;Dync1i2;Dync1i2;Dync1i2;Dync1i2;Dync1i2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,6,13427,ENSMUSG00000027012,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5716,cg27020586,-0.0000259,0.00000743,-3.488624248,0.000555795,loss,ns,0.00000296,0.0000126,0.234936131,0.814413413,pos,ns,-0.001808202,0.003696503,-0.489165447,0.625070485,neg,ns,0.204071007,-0.0000775,0.000127122,-0.609483125,0.542650692,neg,ns,0.687231241,Brd8,Brd8_Exon,18,34608473,34608522,34608473,34608474,50,-,CGCAGGCATCATGACAATGGTAGCTTGGGACACAGACTCTACAGGGGGTG,"Exon (Brd8-201/Brd8, exon 11 of 22)",18,34598615,34624601,25987,2,Brd8-201,16079,Brd8-201;Brd8-204;Brd8-207;Brd8-202;Brd8-203;Brd8-208;Brd8-206,Brd8;Brd8;Brd8;Brd8;Brd8;Brd8;Brd8,0;0;0;0;0;16079;16032,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,2,78656,ENSMUSG00000003778,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12917,cg11304471,-0.000000505,0.00000118,-0.426884271,0.669759939,loss,ns,-0.000000472,0.00000201,-0.23473389,0.81457025,neg,ns,-0.000533733,0.000589311,-0.905689259,0.365803726,neg,ns,0.436751875,-0.00000204,0.0000203,-0.100487943,0.920021912,neg,ns,0.026470425,Arid5b,Arid5b_Exon,10,68278130,68278179,68278178,68278179,50,-,GAAAAGCCTTGTAGAAAATGTAAGGTCCGTGCAAGCCACACGGTGAGCCG,Promoter (<=1kb),10,68092520,68278740,186221,2,Arid5b-204,561,Arid5b-204;Arid5b-201;Arid5b-202,Arid5b;Arid5b;Arid5b,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,33,71371,ENSMUSG00000019947,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
14495,cg06409906,0.0000218,0.00000612,3.556567127,0.000434422,gain,ns,0.00000244,0.0000104,0.234714936,0.814584948,pos,ns,0.004713981,0.003045886,1.547655086,0.122725603,pos,ns,0.911064824,0.0000562,0.000104748,0.536740407,0.591831928,pos,ns,0.101036095,Pde11a,Pde11a_Exon,2,76029306,76029355,76029306,76029307,50,+,CGGCTCCAAGGTCACAGGCTGTCATTAACATTGATCTGAAAAACAGAACC,"Exon (Pde11a-201/Pde11a, exon 17 of 20)",2,75989912,76338774,348863,2,Pde11a-201,309419,Pde11a-201;Pde11a-203,Pde11a;Pde11a,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,4,241489,ENSMUSG00000075270,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20448,cg27414251,0.0000304,0.0000113,2.69743351,0.007370011,gain,ns,0.0000045,0.0000192,0.234708153,0.814590209,pos,ns,0.005358957,0.005614042,0.95456306,0.340542452,pos,ns,0.467828741,-0.000288058,0.000193066,-1.492014336,0.136712319,neg,ns,0.222428789,Csde1,Csde1_Exon,3,103040442,103040491,103040490,103040491,50,-,TTGTGTGCGCTGTTCCTCACAACTTAGAGAGTAAATCTCCAGCTGCCCCG,"Exon (Csde1-201/Csde1, exon 5 of 20)",3,103020426,103058186,37761,1,Csde1-201,20016,Csde1-201;Csde1-211;Csde1-207;Csde1-214;Csde1-215;Csde1-216;Csde1-206;Csde1-212;Csde1-213;Csde1-205;Csde1-217;Csde1-202;Csde1-210;Csde1-209,Csde1;Csde1;Csde1;Csde1;Csde1;Csde1;Csde1;Csde1;Csde1;Csde1;Csde1;Csde1;Csde1;Csde1,0;0;0;0;0;0;0;0;0;0;0;0;0;-3051,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,10,229663,ENSMUSG00000068823,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11177,cg16618968,0.000000717,0.00000274,0.261813938,0.793638767,gain,ns,0.00000109,0.00000465,0.2344417,0.814796854,pos,ns,-0.000878817,0.001362319,-0.645088953,0.519346664,neg,ns,0.284542654,0.0000697,0.0000469,1.487086573,0.138008333,pos,ns,0.948537048,Satb2,Satb2_Intron,1,56834200,56834249,56834248,56834249,50,-,ACAGGTGACAGCTGAGTGGTATCTCCACTTATGACACTGGGAATGTCTCG,"Intron (Satb2-201/Satb2, intron 8 of 9)",1,56793981,56972502,178522,2,Satb2-201,138253,Satb2-201;Satb2-202;Satb2-205,Satb2;Satb2;Satb2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,33,212712,ENSMUSG00000038331,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
178,cg09515097,-0.00000434,0.0000054,-0.803245082,0.422448533,loss,ns,-0.00000215,0.00000918,-0.234378407,0.814845942,neg,ns,-0.005150585,0.002687973,-1.916159477,0.05626426,neg,ns,1.24976739,0.0000207,0.0000924,0.224044422,0.822870322,pos,ns,0.092930542,Tfap4,Tfap4_fiveUTR,16,4559831,4559880,4559879,4559880,50,+,TCCTTCCGCGGAGTAAGGAATTGCATGTAAACAAAGGACTATTTGCAGCG,Promoter (<=1kb),16,4544661,4559854,15194,2,Tfap4-201,0,Tfap4-201;Tfap4-203,Tfap4;Tfap4,0;-1048,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,9,83383,ENSMUSG00000005718,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
24798,cg06102298,-0.00000657,0.00000244,-2.694332008,0.007437334,loss,ns,0.00000097,0.00000414,0.234291408,0.814913416,pos,ns,0.000426561,0.001213094,0.351630137,0.725354546,pos,ns,0.139449663,-0.0000716,0.0000417,-1.71674934,0.087023846,neg,ns,0.917211699,Smarcc2,Smarcc2_Exon,10,128488286,128488335,128488286,128488287,50,-,CGCCGCAGCCCAAAGCCCTGCCATTGTGGCAGCTGTTCAGGGCAACCTCC,"Exon (Smarcc2-203/Smarcc2, exon 27 of 28)",10,128459248,128490482,31235,1,Smarcc2-205,29038,Myl6-201;Myl6-213;Myl6-212;Myl6-202;Myl6-206;Myl6-209;Myl6-211;Myl6-205;Myl6-203;Myl6-214;Myl6-208;Myl6-215;Myl6-207;Myl6-210;Myl6-204;Smarcc2-205;Smarcc2-201;Smarcc2-202;Smarcc2-203,Myl6;Myl6;Myl6;Myl6;Myl6;Myl6;Myl6;Myl6;Myl6;Myl6;Myl6;Myl6;Myl6;Myl6;Myl6;Smarcc2;Smarcc2;Smarcc2;Smarcc2,0;0;0;0;0;0;0;0;0;0;0;5494;5458;5810;5239;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,16,68094,ENSMUSG00000025369,conserved gene and region,10,128488162,128488290,129,*,129,10,0.658914729,0.808270677,0.07751938,0.000000711,CpGisland,TRUE,U10,Tr-S
22774,cg14914422,0.0000459,0.00000477,9.618184292,2.46E-19,gain,yes,-0.0000019,0.0000081,-0.234236,0.814956391,neg,ns,0.00787894,0.002372792,3.320535401,0.001005728,pos,ns,2.99751942,-0.0000205,0.0000816,-0.250996983,0.801982728,neg,ns,0.136315598,Dmbx1,Dmbx1_Intron,4,115936786,115936835,115936786,115936787,50,+,CGGGGCCTTGATTAGATATTTATTGCTGTCATTTACATGGGCACTGCGGG,"Intron (Dmbx1-203/Dmbx1, intron 1 of 4)",4,115915119,115939926,24808,2,Dmbx1-203,3091,Dmbx1-203;Dmbx1-202,Dmbx1;Dmbx1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,42,140477,ENSMUSG00000028707,conserved gene but different region,4,115936749,115936789,41,*,41,7,0.780487805,1.16194332,0.170731707,0.00000029,CpGisland,TRUE,U13,Hc-P
9273,cg09467987,-0.000000633,0.00000113,-0.560342344,0.575650667,loss,ns,-0.00000045,0.00000192,-0.234224222,0.814965526,neg,ns,-0.00029557,0.000562472,-0.525483211,0.599622977,neg,ns,0.222121734,0.0000191,0.0000193,0.985243183,0.325272968,pos,ns,0.976440773,Foxp4,Foxp4_Intron,17,47872624,47872673,47872672,47872673,50,+,GGCTTTTTTCCCTCATTTCGAAGCCTGATTCGTGATGAGAGACTAATTCG,"Intron (Foxp4-204/Foxp4, intron 13 of 16)",17,47867133,47924645,57513,2,Foxp4-204,51972,Foxp4-204;Foxp4-203;Foxp4-201;Foxp4-202,Foxp4;Foxp4;Foxp4;Foxp4,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,25,74123,ENSMUSG00000023991,conserved gene and region,17,47872440,47872721,282,*,282,26,0.563829787,1.163809524,0.092198582,3.73E-19,CpGisland,TRUE,U10,Tr-S
1952,cg19683875,0.00000963,0.00000224,4.29561792,0.0000233,gain,ns,-0.000000892,0.00000381,-0.234221678,0.814967499,neg,ns,0.002771335,0.001116004,2.483265252,0.01354691,pos,ns,1.868159743,-0.0000997,0.0000384,-2.596974935,0.009853293,neg,ns,0.073159091,Rarb,Rarb_fiveUTR,14,16575181,16575230,16575229,16575230,50,+,AAGCCTGTAATTGATCCAAATGATCATTTACCATTTTCCAGGCTTGCTCG,Promoter (<=1kb),14,16430839,16575543,144705,2,Rarb-201,313,Rarb-201;Rarb-207;Rarb-202;Rarb-206;Rarb-203;Rarb-205;Rarb-204,Rarb;Rarb;Rarb;Rarb;Rarb;Rarb;Rarb,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,16,218772,ENSMUSG00000017491,conserved gene and region,14,16575225,16575399,175,*,175,24,0.754285714,0.98245614,0.137142857,3.28E-22,CpGisland,TRUE,NA,NRS
7017,cg10752881,-0.000000744,0.00000269,-0.276524965,0.782329161,loss,ns,0.00000107,0.00000457,0.234160593,0.815014877,pos,ns,-0.000647139,0.001339547,-0.483102867,0.629363706,neg,ns,0.201098306,0.0000475,0.0000461,1.031559398,0.303082686,pos,ns,0.957237097,Tfap2a,Tfap2a_Intergenic_downstream,13,40646215,40646264,40646263,40646264,50,-,ACAGCCTAGTTATAGCAGGAAGCCTAGTTATTGAGTTTGTAAACCAGCCG,Distal Intergenic,13,40716724,40728944,12221,2,Tfap2a-209,82729,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,15,57,21418,ENSMUSG00000021359,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21859,cg09973787,-0.00000518,0.00000306,-1.690819442,0.091876397,loss,ns,-0.00000122,0.0000052,-0.234066757,0.815087658,neg,ns,0.002283728,0.001524071,1.498439141,0.135036775,pos,ns,0.869547943,-0.000140376,0.0000524,-2.678288638,0.007794513,neg,ns,0.92908858,Lmo1,Lmo1_Intergenic_upstream,7,109261846,109261895,109261846,109261847,50,+,CGTCTCTATAATTGTAAAAGTGTAATAGAATCTAATGGAATTTCATTTGG,Distal Intergenic,7,109138675,109175207,36533,2,Lmo1-202,-86639,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,34,66,109594,ENSMUSG00000036111,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16279,cg21246299,-0.0000288,0.0000102,-2.812654845,0.005226917,loss,ns,0.00000408,0.0000174,0.234060813,0.815092269,pos,ns,0.005264581,0.005100677,1.032133734,0.302814023,pos,ns,0.518824018,-0.000320773,0.000175412,-1.828686927,0.06840721,neg,ns,0.153467757,Nfix,Nfix_Intron,8,84712625,84712674,84712673,84712674,50,+,TGGGTGTTACATCATGTCTGGTTGCTCCTGGAAACCAGACGGGTCAGACG,"Intron (Nfix-204/Nfix, intron 10 of 10)",8,84704712,84773396,68685,2,Nfix-204,60722,Nfix-207;Nfix-208;Nfix-204;Nfix-201;Nfix-202;Nfix-203;Nfix-206;Nfix-205,Nfix;Nfix;Nfix;Nfix;Nfix;Nfix;Nfix;Nfix,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,49,18032,ENSMUSG00000001911,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U5,En-Sd
9517,cg07145999,0.00000976,0.00000167,5.849582547,1.25E-08,gain,yes,0.000000663,0.00000283,0.23398912,0.815147877,pos,ns,0.001335701,0.000830541,1.608228937,0.108802976,pos,ns,0.963359226,0.000033,0.0000286,1.153892609,0.249433018,pos,ns,0.951688297,Ap5m1,Ap5m1_threeUTR,14,49088461,49088510,49088509,49088510,50,+,ACCTGTTTAATGTTTTCCCTGTGTCTGGGAACTCCTTAGTGTAATTAGCG,3' UTR,14,49066495,49090879,24385,1,Ap5m1-201,21966,Ap5m1-201;Ap5m1-204;Ap5m1-206;Ap5m1-203;Ap5m1-202,Ap5m1;Ap5m1;Ap5m1;Ap5m1;Ap5m1,0;21930;21919;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,7,7,74385,ENSMUSG00000036291,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5514,cg14265345,-0.00000529,0.0000017,-3.107833878,0.002059282,loss,ns,0.000000676,0.00000289,0.233958331,0.815171758,pos,ns,0.000501265,0.000846518,0.592149174,0.554182331,pos,ns,0.256347325,-0.0000409,0.0000291,-1.406409564,0.160604163,neg,ns,0.95525119,Pbx3,Pbx3_Intergenic_downstream,2,34157561,34157610,34157609,34157610,50,+,TTATGAAATGCTGTCTGGGTTCATCGAGAGAGATCTCAGATTTATCACCG,Distal Intergenic,2,34172873,34288852,115980,2,Pbx3-210,131242,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,82,18516,ENSMUSG00000038718,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25814,cg01979337,-0.0000158,0.0000162,-0.974800087,0.330419472,loss,ns,0.00000645,0.0000276,0.2339156,0.815204903,pos,ns,-0.018373878,0.008083832,-2.272916821,0.023715349,neg,ns,1.624970484,0.000552484,0.000278002,1.987334191,0.047765094,pos,ns,0.231857873,Uncx,Uncx_Intergenic_downstream,5,139550989,139551038,139551037,139551038,50,-,CCAAATTAGGATATCAAGCTTAATTAATGCTAATTGAGTTCTTCAGTACG,Downstream (2-3kb),5,139543898,139545268,1371,1,Uncx-202,7140,Uncx-201,Uncx,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,59,88,22255,ENSMUSG00000029546,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
26064,cg07285892,0.0000318,0.00000953,3.336906187,0.000950265,gain,ns,-0.00000379,0.0000162,-0.233912127,0.815207596,neg,ns,-0.009071009,0.004745102,-1.911657367,0.056841955,neg,ns,1.245330995,-0.000202538,0.000163184,-1.241163202,0.215483839,neg,ns,0.695038204,Gm2505,Gm2505_Intergenic_upstream,3,143594879,143594928,143594879,143594880,50,-,CGTGGGATTTCACAGCAGTGAGAGCAAAACTATTCACAGCAGTACCATAT,Distal Intergenic,3,143872995,143873819,825,1,Gm2505-201,-278116,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,37,100039938,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6655,cg16138021,0.00000129,0.00000427,0.301961069,0.762884218,gain,ns,-0.0000017,0.00000726,-0.233886573,0.815227418,neg,ns,0.00634632,0.002126004,2.985092743,0.003060595,pos,ns,2.514194156,-0.000206421,0.0000731,-2.823311915,0.005060541,neg,ns,0.911316427,Uri1,Uri1_Intergenic_downstream,7,37932504,37932553,37932552,37932553,50,+,CACAGGCAGATGACATGGCTGGCCATGTATCATCTTCTATGTATTGAACG,Distal Intergenic,7,37961301,37962528,1228,2,Uri1-203,29975,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,19,27,19777,ENSMUSG00000030421,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20781,cg15195312,-0.000029,0.00000415,-6.995907534,1.63E-11,loss,yes,-0.00000165,0.00000705,-0.233867437,0.815242261,neg,ns,-0.009380505,0.002064265,-4.544235487,0.00000791,neg,ns,5.101788015,0.000176817,0.000071,2.49074121,0.013270789,pos,ns,0.911915453,Cbfb,Cbfb_Exon,8,105202533,105202582,105202533,105202534,50,-,CGGGAGGAAATGGAGGTGAGAGTTTCACAGCTGCTGGCAGTAACTGGTTA,"Exon (Cbfb-201/Cbfb, exon 5 of 6)",8,105170674,105217989,47316,1,Cbfb-201,31859,Cbfb-201;Cbfb-202;Cbfb-204;Cbfb-203,Cbfb;Cbfb;Cbfb;Cbfb,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,12400,ENSMUSG00000031885,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9225,cg25921329,-0.0000922,0.0000103,-8.995028465,2.41E-17,loss,yes,-0.00000407,0.0000174,-0.233790325,0.815302075,neg,ns,0.004205245,0.005101728,0.824278405,0.410415132,pos,ns,0.386776635,-0.000394703,0.000175448,-2.249685806,0.025170219,neg,ns,0.814094902,Cadm1,Cadm1_Intron,9,47683529,47683578,47683529,47683530,50,+,CGTGACTTTCCAGATCACTTTTATATGGCTTAGAAAGAATAATGTGATTT,"Intron (Cadm1-204/Cadm1, intron 1 of 9)",9,47530173,47853385,323213,1,Cadm1-204,153356,Cadm1-204;Cadm1-209;Cadm1-206;Cadm1-202;Cadm1-203;Cadm1-207;Cadm1-205;Cadm1-211;Cadm1-210;Cadm1-208;Cadm1-201,Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,77,54725,ENSMUSG00000032076,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4068,cg19619014,-0.0000645,0.0000167,-3.867822538,0.000133846,loss,ns,-0.00000663,0.0000283,-0.233774965,0.815313989,neg,ns,-0.013384131,0.008302997,-1.611963774,0.107987409,neg,ns,0.966626878,-0.0000757,0.000285539,-0.265020058,0.791170143,neg,ns,0.535104814,Gm45647,Gm45647_Intergenic_upstream,8,26690076,26690125,26690124,26690125,50,+,AGCTCTCTTTGACACAGCACTATCACTTTATCTTAATCTGTGCTGTTTCG,Distal Intergenic,8,26780315,26780509,195,1,Gm45647-201,-90190,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,46,62,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12812,cg24947764,0.0000833,0.00000805,10.34382843,9.73E-22,gain,yes,0.0000032,0.0000137,0.233768731,0.815318825,pos,ns,0.009918669,0.004007954,2.474745959,0.013867774,pos,ns,1.857993238,-0.00000192,0.000137833,-0.013929262,0.988895376,neg,ns,0.104904125,Tmem33,Tmem33_Intergenic_upstream,5,67228706,67228755,67228706,67228707,50,+,CGAGGGGACCTCACCCCTGGGAAGACTCCAATAAATGCAACCCGGCGCCA,Distal Intergenic,5,67260565,67291461,30897,1,Tmem33-201,-31810,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,22,22,67878,ENSMUSG00000037720,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
16623,cg17231542,0.0000367,0.00000571,6.428178979,4.87E-10,gain,yes,0.00000227,0.0000097,0.233631517,0.815425262,pos,ns,0.007228807,0.002842355,2.543245651,0.011468452,pos,ns,1.940495211,-0.0000752,0.0000977,-0.769076462,0.442433472,neg,ns,0.117246239,Six3,Six3_Intergenic_downstream,17,85646113,85646162,85646113,85646114,50,+,CGGGCAGCACTTATCAATATTTTAGCACGAGAAAGGCAAATGATGTTGAA,Distal Intergenic,17,85621031,85629302,8272,1,Six3-201,25082,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,24,20473,ENSMUSG00000038805,mapped to different genes,17,85645846,85646141,296,*,296,22,0.58445946,0.872688287,0.074324324,3.15E-14,CpGisland,TRUE,U13,Hc-P
20615,cg22102944,-0.00000103,0.000000884,-1.166115892,0.24446395,loss,ns,0.000000351,0.0000015,0.233597225,0.815451862,pos,ns,0.001064334,0.000440016,2.41885128,0.016145244,pos,ns,1.791955388,-0.0000357,0.0000151,-2.356786172,0.019055583,neg,ns,0.977704817,Rsbn1,Rsbn1_Exon,3,103928635,103928684,103928683,103928684,50,-,CCCCAGGGAGTACAAACACCTTTTATGACTCACCAGGAACATTCTATTCG,"Exon (Rsbn1-201/Rsbn1, exon 2 of 8)",3,103914120,103966613,52494,1,Rsbn1-201,14515,Rsbn1-201;Rsbn1-202;Rsbn1-203;Rsbn1-204,Rsbn1;Rsbn1;Rsbn1;Rsbn1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,16,229675,ENSMUSG00000044098,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5876,cg10586546,0.00000256,0.00000142,1.80092821,0.072685974,gain,ns,-0.000000564,0.00000242,-0.233565805,0.815476236,neg,ns,0.000512224,0.000707648,0.723840107,0.469709767,pos,ns,0.328170409,-0.0000164,0.0000243,-0.675941808,0.499581537,neg,ns,0.036089996,Csnk2b,Csnk2b_Exon,17,35120467,35120516,35120467,35120468,50,-,CGGAGCCCACAGAACCAGGAAATCCAGGACACCTCCTCTGAGCTGCTCAT,Promoter (<=1kb),17,35116196,35121429,5234,2,Csnk2b-203,913,Csnk2b-203;Csnk2b-209;Csnk2b-201;Csnk2b-207;Csnk2b-205;Csnk2b-204;Csnk2b-202;Csnk2b-208;Csnk2b-206;Csnk2b-210;Gpank1-204;Gpank1-203;Gpank1-202;Gpank1-205;Gpank1-201,Csnk2b;Csnk2b;Csnk2b;Csnk2b;Csnk2b;Csnk2b;Csnk2b;Csnk2b;Csnk2b;Csnk2b;Gpank1;Gpank1;Gpank1;Gpank1;Gpank1,0;-692;0;0;-2395;-1686;0;0;0;0;-939;-966;-967;-1145;-2436,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,13001,ENSMUSG00000024387,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24715,cg07032712,-0.000000665,0.00000167,-0.398084501,0.690841909,loss,ns,0.000000663,0.00000284,0.233462206,0.815556601,pos,ns,0.000380859,0.000831515,0.458029499,0.647252139,pos,ns,0.188926506,0.0000212,0.0000286,0.741422769,0.458998435,pos,ns,0.927522751,Ccnt2,Ccnt2_Exon,1,127798029,127798078,127798029,127798030,50,+,CGGTGTATTGTACAAGGGACTTTGGGCACAGAGGGGTTAAATGCACAATG,"Exon (Ccnt2-205/Ccnt2, exon 6 of 6)",1,127774164,127798401,24238,1,Ccnt2-205,23865,Ccnt2-203;Ccnt2-204;Ccnt2-206;Ccnt2-205;Ccnt2-202;Ccnt2-201;Ccnt2-207,Ccnt2;Ccnt2;Ccnt2;Ccnt2;Ccnt2;Ccnt2;Ccnt2,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,11,72949,ENSMUSG00000026349,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5301,cg12559572,-0.00000409,0.00000543,-0.75304392,0.451995012,loss,ns,0.00000215,0.00000922,0.233450774,0.815565469,pos,ns,0.005821378,0.002701719,2.15469466,0.031955753,pos,ns,1.49545095,-0.000244761,0.0000929,-2.634331335,0.008853591,neg,ns,0.86444942,Atxn7l1,Atxn7l1_Exon,12,33363047,33363096,33363047,33363048,50,-,CGCACTAAACTCCATGGTAGAAAAACACCTGAATTCACAGATGTGGAAGT,"Exon (Atxn7l1-212/Atxn7l1, exon 9 of 13)",12,33147754,33373030,225277,1,Atxn7l1-212,215293,Atxn7l1-212;Atxn7l1-204;Atxn7l1-202;Atxn7l1-213;Atxn7l1-205;Atxn7l1-209,Atxn7l1;Atxn7l1;Atxn7l1;Atxn7l1;Atxn7l1;Atxn7l1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,24,380753,ENSMUSG00000020564,conserved gene but different region,12,33362984,33363108,125,*,125,9,0.488,1.311188811,0.072,0.00000584,CpGisland,TRUE,U10,Tr-S
16507,cg23126450,-0.0000834,0.00000788,-10.58317867,1.50E-22,loss,yes,0.00000312,0.0000134,0.233449292,0.815566618,pos,ns,0.004726463,0.003920274,1.205646117,0.228873403,pos,ns,0.640404674,-0.00049664,0.000134818,-3.68378633,0.000271082,neg,ns,0.847091144,Gm21006,Gm21006_Intergenic_upstream,5,85239571,85239620,85239619,85239620,50,+,GTCACTTTCATCCCATTGGATGACTGTCATGGGAGCTGCCCAATGGTGCG,Distal Intergenic,5,84866179,84866845,667,2,Gm21006-201,-372726,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,100526665,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14813,cg19044425,0.0000244,0.000011,2.204722036,0.028207809,gain,ns,-0.00000438,0.0000188,-0.233437503,0.815575764,neg,ns,0.00096681,0.005498637,0.175827238,0.860544468,pos,ns,0.065226683,-0.000110238,0.000189098,-0.582968368,0.56033842,neg,ns,0.624719125,Myo18a,Myo18a_Intergenic_downstream,11,77867789,77867838,77867837,77867838,50,+,CTAGGCTGCGCAGATGCCGCTCTTTAATCTCTCCTGATAAATGAATCGCG,Distal Intergenic,11,77857479,77865076,7598,1,Myo18a-216,10310,Myo18a-208;Myo18a-209;Myo18a-207;Myo18a-201;Myo18a-203;Myo18a-222;Myo18a-223;Myo18a-211;Myo18a-205;Myo18a-210;Myo18a-224;Myo18a-202;Myo18a-220;Myo18a-221;Myo18a-215;Myo18a-216,Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,18,360013,ENSMUSG00000000631,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3102,cg15976167,-0.0000405,0.00000766,-5.290298206,0.000000231,loss,yes,-0.00000303,0.000013,-0.233343736,0.815648504,neg,ns,-0.008562401,0.003810159,-2.247255595,0.025326809,neg,ns,1.59641953,0.0000618,0.000131031,0.471461859,0.637642582,pos,ns,0.848587849,Lrmda,Lrmda_Intron,14,22760296,22760345,22760344,22760345,50,-,TTTGATGGACAGAATTATACCCCCAACGCTTCCTGCTCTCCCCAATGACG,"Intron (Lrmda-201/Lrmda, intron 5 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,740584,Lrmda-201;Lrmda-204;Lrmda-206,Lrmda;Lrmda;Lrmda,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16609,cg16258309,0.000018,0.0000074,2.434843322,0.01546209,gain,ns,-0.00000293,0.0000126,-0.233300072,0.815682377,neg,ns,0.008645192,0.00368275,2.347482647,0.019529413,pos,ns,1.709310802,-0.000293325,0.000126649,-2.316034264,0.021208502,neg,ns,0.126252081,Six3,Six3_threeUTR,17,85624839,85624888,85624839,85624840,50,+,CGGTCATTTTCCCAGTTTGTAATATATGTGTAGAAATTGCCTGTATATGA,3' UTR,17,85613608,85625222,11615,1,Six3-202,11231,Six3-202;Six3-203;Six3-201,Six3;Six3;Six3,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,24,20473,ENSMUSG00000038805,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
20500,cg14978459,-0.00000262,0.00000831,-0.314805999,0.753120739,loss,ns,0.00000329,0.0000141,0.233259702,0.815713695,pos,ns,-0.004758503,0.0041369,-1.150258164,0.250924098,neg,ns,0.600457629,0.000169113,0.000142268,1.18869931,0.235467802,pos,ns,0.516839243,Smug1,Smug1_Intron,15,103135771,103135820,103135819,103135820,50,+,GTTTCTCGGCGCGCAAAGCTATAAATAATGGCACAGATCATTAAACCCCG,"Intron (D930007P13Rik-201/D930007P13Rik-201, intron 3 of 6)",15,103153307,103158002,4696,2,Smug1-201,22182,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,12,71726,ENSMUSG00000036061,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
15509,cg20738998,-0.00000164,0.00000723,-0.226240028,0.821163837,loss,ns,-0.00000287,0.0000123,-0.23324635,0.815724054,neg,ns,-0.003201019,0.003599522,-0.889289967,0.374536816,neg,ns,0.426505485,0.000155219,0.000123787,1.253918758,0.210816279,pos,ns,0.830263774,Gm7503,Gm7503_Intergenic_upstream,18,81461740,81461789,81461740,81461741,50,+,CGGATGACAAATGTTGTTCCATATTGTGTCAGACAAAACCAGGGCTCTTG,Distal Intergenic,18,80997003,80997383,381,2,Gm7503-201,-464357,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,17,21,665124,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4056,cg04493448,0.00000977,0.00000634,1.540430207,0.124475631,gain,ns,-0.00000251,0.0000108,-0.23311208,0.815828219,neg,ns,-0.006949015,0.003157873,-2.200536558,0.028506084,neg,ns,1.545062447,0.000167663,0.000108599,1.543869114,0.123640227,pos,ns,0.722193718,Gm45647,Gm45647_Intergenic_upstream,8,26677556,26677605,26677604,26677605,50,+,GTAATTTCATAAAGTGCAAATTTGCTGTCCTGCTCCCAAATGCCGAGTCG,Distal Intergenic,8,26780315,26780509,195,1,Gm45647-201,-102710,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,46,62,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19882,cg15913680,0.00000341,0.00000198,1.727693249,0.08503916,gain,ns,0.000000782,0.00000336,0.232938722,0.815962714,pos,ns,0.00123634,0.000983362,1.257258099,0.209606562,pos,ns,0.678595126,-0.00000403,0.0000338,-0.119049349,0.905313368,neg,ns,0.068158043,Gm45837,Gm45837_Exon,7,101451380,101451429,101451428,101451429,50,-,TCGCTGTTGTCCAATTCCTCAGGCGGGGCCAGCAGGTCTTCCTCAAGCCG,"Exon (Gm45837-201/Gm45837, exon 2 of 32)",7,101410886,101512819,101934,1,Gm45837-201,40494,Gm45837-201;Pde2a-201;Pde2a-212;Pde2a-202;Pde2a-209;Pde2a-204;Pde2a-206;Pde2a-205;Pde2a-211;Pde2a-207,Gm45837;Pde2a;Pde2a;Pde2a;Pde2a;Pde2a;Pde2a;Pde2a;Pde2a;Pde2a,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,6,,NA,mapped to different genes,7,101451139,101451457,319,*,319,38,0.727272727,0.934474252,0.119122257,2.51E-32,CpGisland,TRUE,U3,Pr-B
25633,cg16409094,0.0000408,0.00000507,8.048263284,1.81E-14,gain,yes,-0.00000201,0.00000862,-0.232906497,0.815987715,neg,ns,-0.0006814,0.002524263,-0.269940187,0.787385877,neg,ns,0.103812379,0.0000633,0.0000868,0.72932095,0.466356032,pos,ns,0.884005357,Actl6b,Actl6b_fiveUTR,5,137563141,137563190,137563189,137563190,50,+,AGCTGATGTTCGAGCAGTACAACATTCCTGCCTTCTTCTTATGCAAGACG,5' UTR,5,137553517,137563204,9688,1,Actl6b-203,9624,Actl6b-203;Actl6b-205;Actl6b-209;Actl6b-204;Actl6b-201,Actl6b;Actl6b;Actl6b;Actl6b;Actl6b,0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,1,83766,ENSMUSG00000029712,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25484,cg13666447,-0.0000161,0.00000591,-2.723991616,0.006815634,loss,ns,0.00000234,0.00001,0.232660104,0.816178883,pos,ns,-0.000922611,0.002941137,-0.313692072,0.753965896,neg,ns,0.122648298,0.00000225,0.000101145,0.022258653,0.982255951,pos,ns,0.892827999,Plp1,Plp1_Exon,X,136836046,136836095,136836094,136836095,50,+,TTCATGATTGCTGCCACTTACAACTTTGCCGTCCTTAAACTCATGGGCCG,"Exon (Plp1-201/Plp1, exon 7 of 7)",20,136822671,136839733,17063,1,Plp1-201,13375,Plp1-201;Plp1-202;Plp1-203;Plp1-204,Plp1;Plp1;Plp1;Plp1,0;0;0;2795,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,8,18823,ENSMUSG00000031425,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5326,cg17890086,-0.00000146,0.00000179,-0.815106128,0.415637339,loss,ns,-0.000000707,0.00000304,-0.232465731,0.816329698,neg,ns,0.000425654,0.000891554,0.477429801,0.633392528,pos,ns,0.198327064,-0.0000309,0.0000307,-1.00872686,0.31389234,neg,ns,0.957816435,Zbtb43,Zbtb43_Exon,2,33455021,33455070,33455021,33455022,50,+,CGCTGCTGGTTCAGTTTCTGTAGAATGGTGCTGGAAAAATCAGGAAATTC,"Exon (Zbtb43-202/Zbtb43, exon 2 of 2)",2,33450287,33462353,12067,2,Zbtb43-202,7283,Zbtb43-202;Zbtb43-201;Zbtb43-203;Zbtb43-205;Zbtb43-204,Zbtb43;Zbtb43;Zbtb43;Zbtb43;Zbtb43,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,6,71834,ENSMUSG00000026788,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8589,cg25344301,-0.0000243,0.00000712,-3.42050767,0.000708796,loss,ns,0.00000281,0.0000121,0.232436753,0.816352182,pos,ns,0.002113632,0.003541437,0.596828944,0.551057209,pos,ns,0.258803311,-0.000223669,0.00012179,-1.836521321,0.067237968,neg,ns,0.903943473,Gm12161,Gm12161_Intergenic_upstream,11,45408942,45408991,45408990,45408991,50,+,TCTTTTATGGCCGGAGCAGTGTTTTCCATGATTTATAAATCATTTGGTCG,Distal Intergenic,11,45280594,45280954,361,2,Gm12161-201,-127988,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,10,382510,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17562,cg04818654,-0.00000159,0.00000191,-0.834786401,0.40448084,loss,ns,-0.000000753,0.00000324,-0.23241132,0.816371917,neg,ns,0.002111222,0.000949413,2.223711651,0.026888232,pos,ns,1.570437747,-0.0000845,0.0000327,-2.589171226,0.010074471,neg,ns,0.950587679,Paxbp1,Paxbp1_Exon,16,91030404,91030453,91030452,91030453,50,-,AATAATAAAAACCTTCAAGATGGACTGACTTGAATGGCTTGAAAACTCCG,"Exon (Paxbp1-202/Paxbp1, exon 8 of 18)",16,91014037,91044543,30507,2,Paxbp1-202,14090,Paxbp1-202;Paxbp1-201;Paxbp1-207;Paxbp1-206;Paxbp1-205;Paxbp1-203;Paxbp1-204,Paxbp1;Paxbp1;Paxbp1;Paxbp1;Paxbp1;Paxbp1;Paxbp1,0;0;0;0;-2766;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,7,67367,ENSMUSG00000022974,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25257,cg24108797,0.00000637,0.00000171,3.723510647,0.000233326,gain,ns,0.000000674,0.0000029,0.232216092,0.816523404,pos,ns,0.002665275,0.000850948,3.132123698,0.00190111,pos,ns,2.720992681,-0.0000315,0.0000293,-1.077244894,0.282208446,neg,ns,0.062153406,Cxxc4,Cxxc4_Exon,3,134240436,134240485,134240436,134240437,50,+,CGCAGCAGCCTCAGCAGCCGTCACAGACAGTGCGTTTCAAATTGCCAATC,"Exon (Cxxc4-203/Cxxc4, exon 3 of 4)",3,134236484,134259620,23137,1,Cxxc4-204,3952,Cxxc4-204;Cxxc4-203;Cxxc4-202;Cxxc4-201;Cxxc4-205,Cxxc4;Cxxc4;Cxxc4;Cxxc4;Cxxc4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,18,20,319478,ENSMUSG00000044365,mapped to different genes,3,134240265,134240649,385,*,385,21,0.587012987,0.63362069,0.054545455,5.57E-11,CpGisland,TRUE,U3,Pr-B
14739,cg17109871,0.0000307,0.0000104,2.944744952,0.003476731,gain,ns,0.00000411,0.0000177,0.232205291,0.816531785,pos,ns,0.01065003,0.005186609,2.053370475,0.040875407,pos,ns,1.388537911,-0.000228104,0.000178367,-1.278843505,0.201908672,neg,ns,0.125450272,Gm21816,Gm21816_Intron,16,77500115,77500164,77500115,77500116,50,-,CGGCTTCAGGGGAGATTGGCAGCTGGGTCAAACAAAGTCCTTCCATTGGC,"Intron (Mir99ahg-207/Mir99ahg-207, intron 5 of 7)",16,77400847,77401208,362,1,Gm21816-201,99317,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,8,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3114,cg18891221,-0.00013692,0.0000176,-7.765665124,1.20E-13,loss,yes,0.00000695,0.00003,0.232036089,0.816663083,pos,ns,0.052612322,0.008775384,5.995443716,5.64E-09,pos,ns,8.248782037,-0.002924835,0.000301785,-9.691791933,1.42E-19,neg,yes,0.71854236,Lrmda,Lrmda_Intron,14,22783630,22783679,22783630,22783631,50,-,CGTGCTCAGCAGAGGACTGCAATTACAGTTTAAGACAGCTACTTTTTATT,"Intron (Lrmda-201/Lrmda, intron 5 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,763918,Lrmda-201;Lrmda-204;Lrmda-206,Lrmda;Lrmda;Lrmda,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1663,cg14242190,0.0000117,0.000016,0.733311066,0.4639229,gain,ns,0.0000063,0.0000271,0.231931784,0.816744025,pos,ns,0.005340782,0.007953772,0.671477879,0.502416201,pos,ns,0.298936365,0.0000882,0.00027353,0.32247486,0.747310354,pos,ns,0.224530442,Gm26993,Gm26993_Intergenic_upstream,19,14123914,14123963,14123962,14123963,50,+,TTGGAACTGTCGGACTAATAGGATTAAGCAATAGCAGATGCAGGTCCCCG,Distal Intergenic,19,14017583,14018371,789,2,Gm26993-201,-105543,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,8,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
3939,cg01546209,-0.0000279,0.00000637,-4.379324572,0.0000163,loss,ns,-0.00000251,0.0000108,-0.231915468,0.816756687,neg,ns,0.002447797,0.003171628,0.771779542,0.440832931,pos,ns,0.355725971,-0.0000814,0.000109072,-0.745889483,0.456299391,neg,ns,0.907489755,Gm7847,Gm7847_Promoter,18,25829402,25829451,25829450,25829451,50,-,GCTTCACCATAAATGAGTACAATTCAGGCTGATGTATTGCAGCTGAGCCG,Promoter (5-6kb),18,25823581,25824357,777,2,Gm7847-201,-5094,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,22,665916,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22909,cg25115601,-0.0000249,0.00000417,-5.975925837,6.28E-09,loss,yes,0.00000164,0.00000709,0.231892748,0.816774318,pos,ns,-0.005536511,0.002077303,-2.665240255,0.008096321,neg,ns,2.091712303,0.0000333,0.0000714,0.465878839,0.641629385,pos,ns,0.912264255,Trim47,Trim47_Exon,11,116106060,116106109,116106060,116106061,50,+,CGTCCACACTCTCCAGGAAGAAGGCAGGCTTGAGTCTGTGGGTGAAGAGC,"Exon (Trim47-206/Trim47, exon 4 of 4)",11,116105752,116108119,2368,2,Trim47-206,2010,Trim47-206;Trim47-202;Trim47-201;Trim47-207;Trim47-203;Trim47-205;Trim47-204,Trim47;Trim47;Trim47;Trim47;Trim47;Trim47;Trim47,0;0;0;974;1631;1926;21101,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,217333,ENSMUSG00000020773,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20568,cg04562304,-0.00000463,0.00000221,-2.098782964,0.03664473,loss,ns,-0.000000868,0.00000375,-0.231734936,0.816896786,neg,ns,-0.002097273,0.001097806,-1.910421914,0.057001348,neg,ns,1.244114872,0.0000037,0.0000378,0.097914475,0.922063483,pos,ns,0.950279255,Syt6,Syt6_threeUTR,3,103627076,103627125,103627076,103627077,50,-,CGGAAGCCCATCGCACACTGGCACTCCTTGGTGGAGGTAAAGAAATCCTT,3' UTR,3,103575231,103630946,55716,1,Syt6-205,51845,Syt6-205;Syt6-201;Syt6-206;Syt6-207;Syt6-208;Syt6-210;Syt6-202;Syt6-203;Syt6-204,Syt6;Syt6;Syt6;Syt6;Syt6;Syt6;Syt6;Syt6;Syt6,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,4,54524,ENSMUSG00000027849,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24739,cg14686746,-0.0000113,0.00000575,-1.964194652,0.050400708,loss,ns,-0.00000226,0.00000977,-0.231621207,0.816985048,neg,ns,-0.004598245,0.002860941,-1.607248958,0.10901778,neg,ns,0.962502665,-0.0000734,0.0000984,-0.745624733,0.456459117,neg,ns,0.88676823,Baz2a,Baz2a_Exon,10,128108997,128109046,128108997,128108998,50,-,CGGGTCTCCCATGAACTTCCCCCAGCAAGGGAAAAGTGAGTGTGAGGGCT,"Exon (Baz2a-204/Baz2a, exon 4 of 11)",10,128091577,128116757,25181,1,Baz2a-204,17420,Baz2a-204;Baz2a-209;Baz2a-203;Baz2a-206;Baz2a-208;Baz2a-205;Baz2a-201;Baz2a-202;Baz2a-207,Baz2a;Baz2a;Baz2a;Baz2a;Baz2a;Baz2a;Baz2a;Baz2a;Baz2a,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,7,116848,ENSMUSG00000040054,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26539,cg16684539,-0.00000167,0.00000255,-0.653541743,0.513891539,loss,ns,-0.000001,0.00000433,-0.231495765,0.817082401,neg,ns,-0.000721253,0.001268551,-0.568564271,0.570063517,neg,ns,0.244076752,0.0000268,0.0000436,0.615162217,0.538898906,pos,ns,0.958088458,Casz1,Casz1_Intron,4,148897352,148897401,148897352,148897353,50,+,CGGCTAATTGAATTTAATGGGAAGATGATTTTCAATTTTATTTGATTACC,"Intron (Casz1-201/Casz1, intron 3 of 15)",4,148804429,148945129,140701,1,Casz1-201,92923,Casz1-201;Casz1-202;Casz1-206,Casz1;Casz1;Casz1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,94,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20200,cg10211907,0.0000413,0.00000503,8.211425906,5.97E-15,gain,yes,-0.00000198,0.00000855,-0.231450632,0.817117429,neg,ns,0.008129958,0.002505362,3.245023786,0.001302739,pos,ns,2.885142529,-0.000192455,0.0000862,-2.233718586,0.026214653,neg,ns,0.055161578,Unc79,Unc79_fiveUTR,12,102949280,102949329,102949280,102949281,50,+,CGGGCAGCTCCAGGAGGGGACGGACAGGAAGCCTTTGGCCGCCTATTAAA,Promoter (<=1kb),12,102948859,103184001,235143,1,Unc79-202,421,Unc79-202;Unc79-208,Unc79;Unc79,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,12,24,217843,ENSMUSG00000021198,conserved gene and region,12,102948810,102949512,703,*,703,59,0.644381223,0.809149434,0.083926031,2.91E-40,CpGisland,TRUE,NA,NRS
19916,cg14696586,0.00000559,0.00000603,0.928137132,0.354058525,gain,ns,0.00000237,0.0000102,0.231380648,0.817171744,pos,ns,0.003602028,0.002999065,1.201050286,0.230648552,pos,ns,0.637049268,-0.0000551,0.000103138,-0.534394984,0.593451327,neg,ns,0.889020023,Ogt,Ogt_Exon,X,101653497,101653546,101653497,101653498,50,-,CGCCTGCCTTAGGTTGCTGACTTCTTTATTTCAGAGCTCTGGAGACACCT,"Exon (Ogt-204/Ogt, exon 4 of 4)",20,101640060,101682940,42881,1,Ogt-202,13437,Ogt-202;Ogt-206;Ogt-201;Ogt-205;Ogt-204;Ogt-207;Ogt-203,Ogt;Ogt;Ogt;Ogt;Ogt;Ogt;Ogt,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,32,33,108155,ENSMUSG00000034160,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2034,cg19372162,-0.0000116,0.0000078,-1.482643384,0.139185042,loss,ns,-0.00000307,0.0000133,-0.231347666,0.817197342,neg,ns,0.020744692,0.003883544,5.341690572,0.000000179,pos,ns,6.748189785,-0.000508192,0.000133555,-3.80511741,0.00017076,neg,ns,0.163388248,Gm47768,Gm47768_Intron,10,17563162,17563211,17563162,17563163,50,-,CGACTCTGCAAAAGTGTGCCTTTATTTTTGGCACAAATTGCTATAGCAAA,"Intron (Gm47771-201/Gm47771-201, intron 2 of 2)",10,17514730,17514944,215,1,Gm47768-201,48481,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
14675,cg16882804,0.0000809,0.0000467,1.735060625,0.083723914,gain,ns,-0.0000183,0.0000793,-0.231283999,0.817246757,neg,ns,-0.017635498,0.023220106,-0.759492594,0.44813509,neg,ns,0.348591049,0.000000249,0.000798538,0.000312157,0.999751136,pos,ns,0.161163246,Lrrtm1,Lrrtm1_fiveUTR,6,77242640,77242689,77242688,77242689,50,+,TGAGCAGCTTACGACACTCAGTGAGCAGTAGGTGCCTGTGCAAGCTCGCG,Promoter (<=1kb),6,77242689,77257791,15103,1,Lrrtm1-201,0,Ctnna2-204;Ctnna2-205;Ctnna2-202;Ctnna2-201;Lrrtm1-201;Lrrtm1-202;Lrrtm1-203;Lrrtm1-204,Ctnna2;Ctnna2;Ctnna2;Ctnna2;Lrrtm1;Lrrtm1;Lrrtm1;Lrrtm1,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,1,74342,ENSMUSG00000060780,mapped to different genes,6,77242605,77243155,551,*,551,46,0.626134301,0.852367501,0.083484574,1.98E-31,CpGisland,TRUE,U3,Pr-B
115,cg03804622,-0.00000494,0.00000394,-1.253355642,0.211020773,loss,ns,-0.00000155,0.00000669,-0.231277503,0.817251798,neg,ns,-0.00311292,0.001960082,-1.58815805,0.113269976,neg,ns,0.94588519,0.0000192,0.0000674,0.284582402,0.776154104,pos,ns,0.888530461,Grk2,Grk2_Exon,19,4287613,4287662,4287613,4287614,50,+,CGCCGCTGCCACTGGGTCAGGAAGGGGTTGCCCATCTTGGACATGTAGCC,"Exon (Grk2-201/Grk2, exon 20 of 22)",19,4286001,4305955,19955,2,Grk2-201,18293,Ankrd13d-201;Ankrd13d-202;Ankrd13d-205;Ankrd13d-204;Grk2-201;Grk2-203;Grk2-202;Grk2-209;Grk2-204;Grk2-207;Grk2-205;Grk2-208;Grk2-206,Ankrd13d;Ankrd13d;Ankrd13d;Ankrd13d;Grk2;Grk2;Grk2;Grk2;Grk2;Grk2;Grk2;Grk2;Grk2,-4478;-4476;-4476;-4580;0;0;0;0;1741;1732;2821;4149;17546,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,5,110355,ENSMUSG00000024858,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15348,cg22837587,-0.00000159,0.000000734,-2.171022822,0.030687883,loss,ns,0.000000288,0.00000125,0.230860372,0.817575564,pos,ns,0.000758408,0.000365465,2.075190233,0.038793384,pos,ns,1.411242332,-0.0000219,0.0000126,-1.745047869,0.081967436,neg,ns,0.024689977,Dcaf5,Dcaf5_Exon,12,80436289,80436338,80436289,80436290,50,-,CGTCTCCTCTGAAAGTCCTGAGTGAGCAGGGGGTCCCCATGCAAGCCCCG,Promoter (<=1kb),12,80335848,80436601,100754,2,Dcaf5-201,263,Dcaf5-201;Dcaf5-202,Dcaf5;Dcaf5,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,6,320808,ENSMUSG00000049106,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
16884,cg05656329,0.0000476,0.0000102,4.682085509,0.00000425,gain,ns,-0.00000399,0.0000173,-0.230831444,0.817598019,neg,ns,0.044876171,0.005058501,8.871436672,5.86E-17,pos,yes,16.23220209,-0.001195578,0.000173961,-6.872662501,3.47E-11,neg,yes,0.832270676,Aak1,Aak1_Intron,6,86899208,86899257,86899256,86899257,50,-,TATTATGTAATGACCTAATTATGAGGCCTGCCATCTGCTTAGGAGTCACG,"Intron (Aak1-202/Aak1, intron 1 of 20)",6,86849517,87003223,153707,1,Aak1-202,49691,Aak1-202;Aak1-207;Aak1-203;Aak1-201;Aak1-204,Aak1;Aak1;Aak1;Aak1;Aak1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,269774,ENSMUSG00000057230,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6319,cg05185793,-0.0000187,0.00000902,-2.074628859,0.038845793,loss,ns,0.00000354,0.0000153,0.230756364,0.817656298,pos,ns,-0.007544235,0.004488336,-1.68085324,0.093798651,neg,ns,1.027803408,0.000161537,0.000154354,1.046540726,0.296126756,pos,ns,0.795308151,Tenm2,Tenm2_Intron,11,36887646,36887695,36887694,36887695,50,+,CTGATAAACACTTCAAAGTAAACCGCTCATAAATATGAAATGAAAAGCCG,"Intron (Tenm2-202/Tenm2, intron 3 of 30)",11,36006656,37235882,1229227,2,Tenm2-202,348187,Tenm2-202;Tenm2-208;Tenm2-201;Tenm2-204,Tenm2;Tenm2;Tenm2;Tenm2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,47,84,23964,ENSMUSG00000049336,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3634,cg13889916,0.0000158,0.00000998,1.578202034,0.115539043,gain,ns,-0.00000391,0.000017,-0.230474078,0.817875424,neg,ns,-0.008096933,0.004967194,-1.630082091,0.104099751,neg,ns,0.982550309,0.000272768,0.000170821,1.596800336,0.111329053,pos,ns,0.630534558,Amd-ps6,Amd-ps6_Intergenic_upstream,9,24848500,24848549,24848548,24848549,50,-,GCCTTGCCTATCTTTCACACCAAGTCGCCAGGGTACATTTTCCATGGTCG,Distal Intergenic,9,24826343,24827345,1003,2,Amd-ps6-201,-21204,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,666251,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27898,cg20943712,-0.0000188,0.00000668,-2.819438074,0.005120454,loss,ns,-0.00000262,0.0000114,-0.230457312,0.817888439,neg,ns,0.00856783,0.003326084,2.575951047,0.010459322,pos,ns,1.980496473,-0.000365795,0.000114384,-3.197962562,0.001527024,neg,ns,0.814889805,Prox1,Prox1_Exon,1,190160976,190161025,190161024,190161025,50,-,AAGGTGTCCAGGGGGTTCGGAATGATGACGTCGCCAAAGCACTGCAGGCG,"Exon (Prox1-202/Prox1, exon 2 of 5)",1,190118035,190170714,52680,2,Prox1-202,9689,Prox1-202;Prox1-201;Prox1-203,Prox1;Prox1;Prox1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,19,59,19130,ENSMUSG00000010175,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12270,cg04875128,0.0000195,0.00000576,3.377718914,0.000824145,gain,ns,-0.00000225,0.00000979,-0.230301474,0.818009416,neg,ns,0.005804451,0.002868568,2.023466066,0.043882857,pos,ns,1.357705107,-0.0000815,0.0000986,-0.825832909,0.409533979,neg,ns,0.119948869,Otud7a,Otud7a_Exon,7,63758356,63758405,63758356,63758357,50,-,CGCCACGTACCCGCAGCAGAACCGCTCGCTGTCGTCGCAGAGCTACAGCC,"Exon (Otud7a-201/Otud7a, exon 14 of 14)",7,63444751,63759028,314278,1,Otud7a-201,313605,Otud7a-201;Otud7a-204;Otud7a-203,Otud7a;Otud7a;Otud7a,0;107541;3644,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,4,170711,ENSMUSG00000033510,conserved gene and region,7,63757463,63758735,1273,*,1273,194,0.718774548,1.181093852,0.152395915,1.99E-187,CpGisland,TRUE,U3,Pr-B
10169,cg21411520,0.000000263,0.00000141,0.186454103,0.852210624,gain,ns,-0.000000551,0.0000024,-0.230032618,0.818218139,neg,ns,0.000223351,0.000701938,0.318191828,0.750553679,pos,ns,0.124618242,0.0000166,0.0000241,0.687834174,0.492071541,pos,ns,0.970075177,Chd8,Chd8_Exon,14,52205242,52205291,52205290,52205291,50,+,AAGTCTGGGTCCTGCATGATGTTGCAGTCTGTTTGGCTCACCCCATGGCG,"Exon (Chd8-201/Chd8, exon 31 of 37)",14,52198151,52237572,39422,2,Chd8-201,32281,Chd8-201;Chd8-212;Chd8-215;Chd8-207;Chd8-216;Chd8-206;Chd8-209;Chd8-203;Chd8-204;Chd8-205,Chd8;Chd8;Chd8;Chd8;Chd8;Chd8;Chd8;Chd8;Chd8;Chd8,0;0;0;0;0;0;0;0;2412;7732,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,12,67772,ENSMUSG00000053754,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8627,cg15066542,0.00000553,0.00000719,0.769997316,0.441887843,gain,ns,0.00000281,0.0000122,0.229977999,0.818260543,pos,ns,0.000430433,0.003577229,0.120325836,0.904302985,pos,ns,0.043686035,-0.00008,0.000123021,-0.650062352,0.516133379,neg,ns,0.880587719,Dscaml1,Dscaml1_Intron,9,45471102,45471151,45471102,45471103,50,+,CGTATCGCCTTTGCTGTGATAATTCAGATTTATATATTCAGATCAGATTG,"Intron (Dscaml1-208/Dscaml1, intron 5 of 5)",9,45426628,45571224,144597,1,Dscaml1-208,44474,Dscaml1-208;Dscaml1-209;Dscaml1-202;Dscaml1-211;Dscaml1-201;Dscaml1-210,Dscaml1;Dscaml1;Dscaml1;Dscaml1;Dscaml1;Dscaml1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,32,114873,ENSMUSG00000032087,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22851,cg06370004,-0.000000886,0.000000471,-1.879268942,0.061145734,loss,ns,-0.000000184,0.000000801,-0.22993046,0.818297451,neg,ns,0.000110927,0.000234528,0.472979517,0.636560643,pos,ns,0.196160216,-0.0000125,0.00000807,-1.545416425,0.12326578,neg,ns,0.009416629,Unk,Unk_Exon,11,116030447,116030496,116030447,116030448,50,+,CGCTCAGGTGCTGCAGGCACAGCCCGAGAAACCGCAGCACTACACGTACG,Promoter (<=1kb),11,116030322,116061214,30893,1,Unk-201,125,H3f3b-202;Unk-201;Unk-202;Unk-207,H3f3b;Unk;Unk;Unk,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,217331,ENSMUSG00000020770,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
20799,cg05256656,0.00000428,0.00000446,0.95982434,0.337891638,gain,ns,0.00000174,0.00000758,0.229884095,0.818333448,pos,ns,0.001542382,0.002219434,0.69494374,0.487611105,pos,ns,0.311926412,-0.0000656,0.0000763,-0.859656625,0.390642643,neg,ns,0.808488705,Slc9a5,Slc9a5_Exon,8,105356694,105356743,105356742,105356743,50,+,TGGGATTCTGGGCTGGTGCTGGGCACCCTCATCTTCATCCTGTTCTTCCG,"Exon (Slc9a5-201/Slc9a5, exon 6 of 16)",8,105348843,105368743,19901,1,Slc9a5-201,7851,Slc9a5-201;Slc9a5-202,Slc9a5;Slc9a5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,277973,ENSMUSG00000014786,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13027,cg09906908,-0.00000261,0.00000233,-1.120678511,0.263292156,loss,ns,-0.000000909,0.00000395,-0.229825509,0.818378934,neg,ns,0.002317312,0.001158188,2.000808691,0.046284663,pos,ns,1.334562897,-0.000120651,0.0000398,-3.029153256,0.002658672,neg,ns,0.934590209,Slc25a37,Slc25a37_threeUTR,14,69247605,69247654,69247605,69247606,50,+,CGTGGAGCAGGGTGGCCATACTCCCAGCTATCCCTGCAAAACAAACTCCA,3' UTR,14,69241848,69285112,43265,2,Slc25a37-201,37458,Slc25a37-201;Slc25a37-203;Slc25a37-204,Slc25a37;Slc25a37;Slc25a37,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,2,67712,ENSMUSG00000034248,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7984,cg00557947,0.0000158,0.00000283,5.576382066,5.35E-08,gain,yes,-0.00000111,0.00000481,-0.229810954,0.818390234,neg,ns,0.002142247,0.001410138,1.519175561,0.129737513,pos,ns,0.886934431,-0.0000254,0.0000485,-0.523453837,0.601032446,neg,ns,0.018345621,Pax2,Pax2_Intergenic_upstream,19,44674751,44674800,44674751,44674752,50,+,CGGATTCTATTTGCATCCGGAATCGCATGTACATGAAAAATGTGTCCGCG,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-81245,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
16407,cg14415687,-0.00000335,0.0000052,-0.644660187,0.519624173,loss,ns,-0.00000203,0.00000883,-0.229729327,0.81845361,neg,ns,0.001255572,0.002586872,0.485362818,0.627761838,pos,ns,0.202205089,-0.0000892,0.000089,-1.002315288,0.316973065,neg,ns,0.911223991,Fbxw7,Fbxw7_fiveUTR,3,84903558,84903607,84903606,84903607,50,+,TGGCTTTTGGAAATGAATCAGGAACTGCTCTCTGTGGGCAGCAAAAGACG,5' UTR,3,84815268,84979198,163931,1,Fbxw7-204,88290,Fbxw7-204;Fbxw7-205;Fbxw7-206;Fbxw7-203;Gm37240-203,Fbxw7;Fbxw7;Fbxw7;Fbxw7;Gm37240,0;0;87792;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,10,50754,ENSMUSG00000028086,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11608,cg19685479,0.000014,0.00000251,5.568757181,5.57E-08,gain,yes,-0.00000098,0.00000427,-0.229662636,0.81850539,neg,ns,0.005677552,0.001249775,4.542858111,0.00000796,pos,ns,5.099126775,-0.000138349,0.000043,-3.218949407,0.001422919,neg,ns,0.033362674,Emx2,Emx2_fiveUTR,19,59458703,59458752,59458751,59458752,50,+,AGCTGTTTATGTGATCCCCGCACTAATTAGGCTCATGAACTAACAAATCG,Promoter (<=1kb),19,59458372,59465357,6986,1,Emx2-201,331,Emx2-201;Emx2-202;Emx2-203,Emx2;Emx2;Emx2,0;-767;-4050,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,23,13797,ENSMUSG00000043969,mapped to different genes,19,59458392,59458858,467,*,467,34,0.597430407,0.819721218,0.072805139,2.25E-21,CpGisland,TRUE,U13,Hc-P
2666,cg21690718,0.00000603,0.00000367,1.644058889,0.101177747,gain,ns,0.00000143,0.00000623,0.229455793,0.818665992,pos,ns,0.000152146,0.001825154,0.083360678,0.933618557,pos,ns,0.029830525,-0.0000641,0.0000628,-1.021724273,0.307708085,neg,ns,0.907055627,Mep1b,Mep1b_Exon,18,21093562,21093611,21093610,21093611,50,+,CCTTGGCAACAAGCCACAATGACACTTTTGGATCAAAATCCTGACATTCG,"Exon (Mep1b-201/Mep1b, exon 11 of 15)",18,21072344,21100199,27856,1,Mep1b-201,21218,Mep1b-201,Mep1b,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,17288,ENSMUSG00000024313,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19985,cg18280269,-0.0000262,0.00000576,-4.544931131,0.00000789,loss,ns,0.00000225,0.00000979,0.229423611,0.818690981,pos,ns,0.003685241,0.002867049,1.285377701,0.199619761,pos,ns,0.699796468,-0.000230741,0.0000986,-2.340225477,0.019906171,neg,ns,0.9150981,Slc22a15,Slc22a15_Intergenic_upstream,3,101964416,101964465,101964464,101964465,50,-,TTAATTCCTTTGTTAATGTCTTTATGAATGCAATTAACACTTCATTCACG,Distal Intergenic,3,101921015,101924453,3439,2,Slc22a15-202,-40012,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,2,242126,ENSMUSG00000033147,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23711,cg27338130,0.000000922,0.00000292,0.316256596,0.752020591,gain,ns,-0.00000114,0.00000495,-0.229398066,0.818710816,neg,ns,-0.00072709,0.00145129,-0.50099544,0.616729872,neg,ns,0.209905016,-0.000000575,0.0000499,-0.011519006,0.990816775,neg,ns,0.865320213,Ehd4,Ehd4_Exon,2,120091318,120091367,120091366,120091367,50,-,TGCCCAGGACGCTGTTGGGCAGCTTGGAGGTCACCATCTCCTTCTTGGCG,"Exon (Ehd4-201/Ehd4, exon 6 of 6)",2,120089175,120154606,65432,2,Ehd4-201,63239,Ehd4-201,Ehd4,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,98878,ENSMUSG00000027293,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15216,cg21027282,0.00000434,0.00000269,1.611826765,0.108017241,gain,ns,0.00000105,0.00000457,0.229371017,0.818731819,pos,ns,0.001408556,0.001339451,1.051592333,0.293805656,pos,ns,0.531939848,-0.0000498,0.0000461,-1.081201905,0.280447685,neg,ns,0.959656858,Rad51b,Rad51b_Intron,12,79707683,79707732,79707683,79707684,50,-,CGGTGTCTTTGAAATCAAATACCCTGCCATTGGCATATCCAGGCTTGAAA,"Intron (Rad51b-202/Rad51b, intron 8 of 10)",12,79297282,79814690,517409,1,Rad51b-202,410401,Rad51b-202;Rad51b-203,Rad51b;Rad51b,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,6,19363,ENSMUSG00000059060,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18355,cg23346072,-0.00000041,0.00000705,-0.058227198,0.953605171,loss,ns,0.00000275,0.000012,0.229369342,0.818733119,pos,ns,-0.003165449,0.00350761,-0.902451889,0.367517526,neg,ns,0.434721946,0.000164615,0.000120626,1.364671716,0.173345979,pos,ns,0.116123123,Otp,Otp_Promoter,13,94869338,94869387,94869386,94869387,50,-,AGATCGATCTTCTCTGTAGATTTCTCTAATTGAGTGAATATAGACGCCCG,Promoter (6-7kb),13,94875602,94885130,9529,1,Otp-201,-6264,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,27,34,18420,ENSMUSG00000021685,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23741,cg05564167,0.0000311,0.0000143,2.16532324,0.031125431,gain,ns,-0.00000559,0.0000244,-0.22933329,0.818761113,neg,ns,0.004287126,0.007139782,0.600456166,0.54864098,pos,ns,0.260711756,-0.000164548,0.000245537,-0.670155049,0.503257856,neg,ns,0.71255793,Foxo6,Foxo6_Intergenic_downstream,4,120259874,120259923,120259922,120259923,50,-,CTTAGGTTTACGATGTGCATGAAATTGATCGCCAGTTGGCGCAGCCCCCG,Distal Intergenic,4,120267079,120287349,20271,2,Foxo6-201,27475,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,42,329934,ENSMUSG00000052135,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
21374,cg04169770,0.0000377,0.0000123,3.054447483,0.002450438,gain,ns,0.00000481,0.000021,0.229328929,0.818764499,pos,ns,0.007270484,0.006139968,1.184124118,0.237271056,pos,ns,0.624755237,-0.000340313,0.000211153,-1.61169101,0.108046807,neg,ns,0.576937886,Cacna2d2,Cacna2d2_Exon,9,107524134,107524183,107524134,107524135,50,+,CGAGTTCCTGAAAAACTTTATTGAGCTCATGGAGAAAGTGACTCCAGACT,"Exon (Cacna2d2-201/Cacna2d2, exon 24 of 38)",9,107399612,107529343,129732,1,Cacna2d2-201,124522,Cacna2d2-201;Cacna2d2-205;Cacna2d2-202;Cacna2d2-203;Cacna2d2-204;Cacna2d2-208;Cacna2d2-210;Cacna2d2-206,Cacna2d2;Cacna2d2;Cacna2d2;Cacna2d2;Cacna2d2;Cacna2d2;Cacna2d2;Cacna2d2,0;0;0;0;0;0;0;-2474,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,18,56808,ENSMUSG00000010066,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
8853,cg13832772,-0.000000472,0.00000174,-0.270881467,0.786662472,loss,ns,-0.000000678,0.00000296,-0.229251913,0.818824301,neg,ns,-0.000425378,0.000866654,-0.49082754,0.623895693,neg,ns,0.204888012,0.0000423,0.0000298,1.420772382,0.156387991,pos,ns,0.964982936,Snx25,Snx25_Exon,8,46034466,46034515,46034466,46034467,50,-,CGGGCATTTTGCTGTCCAACAAGGCTCTGAAGCATATCTGAAAAATTAAG,"Exon (Snx25-207/Snx25, exon 17 of 18)",8,46033261,46124146,90886,2,Snx25-207,89631,Lrp2bp-203;Snx25-207;Snx25-203;Snx25-201;Snx25-208;Snx25-209,Lrp2bp;Snx25;Snx25;Snx25;Snx25;Snx25,23864;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,102141,ENSMUSG00000038291,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20699,cg14878567,-0.000000441,0.00000366,-0.120477363,0.904183057,loss,ns,-0.00000143,0.00000622,-0.229238571,0.818834662,neg,ns,0.002849623,0.001821957,1.564045129,0.118827192,pos,ns,0.925084167,-0.00013645,0.0000627,-2.177735183,0.0301794,neg,ns,0.933341646,Rnf219,Rnf219_Exon,14,104480184,104480233,104480232,104480233,50,+,TCTAGTTCCTCTATATACTTATCACTTCGTTCCAGGGCTTTCTTGAGGCG,"Exon (Rnf219-201/Rnf219, exon 6 of 6)",14,104477536,104522632,45097,2,Rnf219-201,42399,Gm49205-201;Rnf219-201,Gm49205;Rnf219,-1258;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,7,72486,ENSMUSG00000022120,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16698,cg18443195,0.0000352,0.00000863,4.079123141,0.0000575,gain,ns,-0.00000336,0.0000147,-0.229221653,0.818847799,neg,ns,0.011864703,0.004293542,2.763383543,0.006062539,pos,ns,2.217345433,-0.000135052,0.000147655,-0.914647273,0.361087707,neg,ns,0.066895735,Prkce,Prkce_fiveUTR,17,86168583,86168632,86168631,86168632,50,-,CGCCCCGACCATGGTAGTGTTCAATGGCCTTCTTAAGATCAAAATCTGCG,Promoter (<=1kb),17,86167785,86657919,490135,1,Prkce-202,798,Prkce-202;Prkce-204;Prkce-201,Prkce;Prkce;Prkce,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,7,18754,ENSMUSG00000045038,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
4312,cg20912514,0.0000604,0.0000121,5.003293791,0.000000946,gain,yes,-0.0000047,0.0000205,-0.229212891,0.818854603,neg,ns,0.017976632,0.006006551,2.992837445,0.002986141,pos,ns,2.524889692,-0.000395877,0.000206565,-1.91647847,0.056223515,neg,ns,0.552475454,Supt5,Supt5_threeUTR,7,28322002,28322051,28322050,28322051,50,-,CCTTGAGGTCCTCATGCTTGGGCATGATGGTGATCTTGTTGCCATCCACG,3' UTR,7,28314891,28338746,23856,2,Supt5-202,16695,Supt5-202;Supt5-203;Supt5-201;Supt5-208;Supt5-207;Supt5-204;Supt5-205;Supt5-206,Supt5;Supt5;Supt5;Supt5;Supt5;Supt5;Supt5;Supt5,0;0;0;0;-3210;7372;7035;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,3,20924,ENSMUSG00000003435,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1137,cg08108903,-0.00000114,0.00000422,-0.269395807,0.787804334,loss,ns,0.00000164,0.00000717,0.229199447,0.818865042,pos,ns,0.001112968,0.002099412,0.530133076,0.596399171,pos,ns,0.224462969,-0.000176145,0.0000722,-2.439726817,0.015258634,neg,ns,0.88105787,Gm14513,Gm14513_Intergenic_upstream,X,11763692,11763741,11763740,11763741,50,-,AGGGAACATAAAGGACCTGAGGAGCCTTCACAGCCATTTAGTGATTCTCG,Distal Intergenic,20,11684002,11684124,123,2,Gm14513-201,-79617,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,9,668984,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3267,cg03413992,-0.0000243,0.00000987,-2.459943092,0.01444136,loss,ns,-0.00000384,0.0000168,-0.229132652,0.818916909,neg,ns,-0.00203181,0.00491358,-0.413509068,0.679519587,neg,ns,0.16779802,-0.000253993,0.000168978,-1.503114585,0.133827509,neg,ns,0.751436485,Kcnma1,Kcnma1_Exon,14,23425710,23425759,23425710,23425711,50,-,CGTCTCATTCTCTTGTAGATGGACATCTTGGCTATAACCGTGTGGTTGGA,"Exon (Kcnma1-207/Kcnma1, exon 18 of 28)",14,23289431,23803304,513874,2,Kcnma1-207,377545,Kcnma1-207;Kcnma1-210;Kcnma1-205;Kcnma1-201;Kcnma1-208;Kcnma1-209;Kcnma1-212;Kcnma1-204;Kcnma1-202;Kcnma1-211;Kcnma1-229;Kcnma1-234;Kcnma1-223;Kcnma1-214;Kcnma1-216;Kcnma1-219;Kcnma1-220;Kcnma1-224;Kcnma1-233;Kcnma1-236;Kcnma1-237;Kcnma1-213;Kcnma1-228;Kcnma1-203;Kcnma1-206;Kcnma1-221;Kcnma1-225;Kcnma1-226;Kcnma1-230;Kcnma1-235;Kcnma1-217,Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,16,41,16531,ENSMUSG00000063142,conserved gene but different region,14,23425613,23425711,99,*,99,9,0.565656566,1.16015625,0.090909091,0.000000843,CpGisland,TRUE,U15,NS
18596,cg15685296,0.0000699,0.00000979,7.137317144,6.78E-12,gain,yes,-0.00000381,0.0000166,-0.22911332,0.818931921,neg,ns,-0.000903297,0.004874338,-0.18531683,0.853101727,neg,ns,0.068999179,0.000295853,0.000167628,1.764936041,0.078559115,pos,ns,0.139675994,Hoxb5,Hoxb5_Exon,11,96303748,96303797,96303748,96303749,50,+,CGGCTACAATTACAATGGGATGGACCTCAGCGTCAACCGCTCCTCGGCCT,Promoter (<=1kb),11,96303336,96306121,2786,1,Hoxb5-202,412,Hoxb5-202;Hoxb5-201;Hoxb6-202;Hoxb6-201,Hoxb5;Hoxb5;Hoxb6;Hoxb6,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,22,34,15413,ENSMUSG00000038700,conserved gene and region,11,96303706,96304121,416,*,416,40,0.675480769,0.879120879,0.096153846,5.87E-30,CpGisland,TRUE,U3,Pr-B
22013,cg11345778,-0.00000824,0.00000304,-2.714386147,0.007011638,loss,ns,0.00000118,0.00000516,0.229037144,0.818991074,pos,ns,0.002079528,0.001510728,1.376507558,0.169657938,pos,ns,0.770425815,-0.0000619,0.000052,-1.190675359,0.234691989,neg,ns,0.946774833,Elavl4,Elavl4_Intergenic_downstream,4,110135831,110135880,110135879,110135880,50,+,ATTAAGAGACACATAAATTAACAGGGTTTTTAGTTCTTGTGGAACTGCCG,Distal Intergenic,4,110206359,110223148,16790,2,Elavl4-211,87268,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,36,15572,ENSMUSG00000028546,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8623,cg04560456,0.00000932,0.0000138,0.673838418,0.500916158,gain,ns,-0.00000538,0.0000235,-0.229010168,0.819012022,neg,ns,-0.006198715,0.006883662,-0.900496734,0.368554976,neg,ns,0.433497721,0.000598372,0.000236729,2.527671571,0.011978831,pos,ns,0.399347556,Lin28b,Lin28b_fiveUTR,10,45470117,45470166,45470117,45470118,50,-,CGGAGTGATCTTCTGCATCAATCTAACATCTTGATTTTGTGCGATCACAA,Promoter (<=1kb),10,45376620,45470201,93582,2,Lin28b-201,35,Lin28b-201;Lin28b-203;Lin28b-202,Lin28b;Lin28b;Lin28b,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,5,380669,ENSMUSG00000063804,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8904,cg24978261,0.0000117,0.00000194,6.035446774,4.52E-09,gain,yes,0.000000753,0.00000329,0.228956157,0.819053964,pos,ns,0.002661025,0.000964035,2.760300114,0.00611865,pos,ns,2.213344378,-0.0000491,0.0000332,-1.481499828,0.139489148,neg,ns,0.040852972,Helt,Helt_fiveUTR,8,46294659,46294708,46294707,46294708,50,+,AGCCTTTAATAGGCTGTTCCGCCGGGTTCAAGGGAGAGCTCTTGGAGACG,Promoter (<=1kb),8,46292039,46294671,2633,2,Helt-201,0,Helt-201;Helt-202;Helt-203,Helt;Helt;Helt,0;-670;-1324,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,7,22,234219,ENSMUSG00000047171,conserved gene but different region,8,46294678,46294897,220,*,220,21,0.65,0.923630548,0.095454546,6.99E-16,CpGisland,TRUE,U13,Hc-P
17154,cg05636239,-0.00000152,0.000000431,-3.517235304,0.000501254,loss,ns,0.000000168,0.000000732,0.228950089,0.819058676,pos,ns,-0.000217676,0.000214485,-1.014877897,0.310955466,neg,ns,0.507301805,0.00000105,0.00000738,0.143012619,0.886373126,pos,ns,0.988105229,Rps6-ps2,Rps6-ps2_Intergenic_downstream,8,88881608,88881657,88881608,88881609,50,+,CGAGTCTGAATTCCATATACACCGGAGATTGCTTATCGATCCACATCAGA,Distal Intergenic,8,88806391,88807137,747,1,Rps6-ps2-201,75217,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,14,675985,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18447,cg25029029,0.00000154,0.00000271,0.568899274,0.56983642,gain,ns,-0.00000105,0.0000046,-0.228847242,0.819138543,neg,ns,0.001444175,0.001348288,1.071118016,0.28494957,pos,ns,0.545231993,-0.0000515,0.0000464,-1.110230592,0.267760103,neg,ns,0.954249495,Cnot1,Cnot1_Exon,8,95756993,95757042,95757041,95757042,50,-,GAGCCCCAGTTATAACAAGTCGTTATGCTCTAGCACTGTTGCTTGGCCCG,"Exon (Gm26265-202/Gm26265-202, exon 1 of 1)",8,95719451,95807462,88012,2,Cnot1-202,50420,Cnot1-202;Cnot1-201;Cnot1-203;Cnot1-216;Cnot1-205;Cnot1-217;Cnot1-204;Cnot1-207,Cnot1;Cnot1;Cnot1;Cnot1;Cnot1;Cnot1;Cnot1;Cnot1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,24,234594,ENSMUSG00000036550,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5276,cg17527148,-0.00000626,0.00000321,-1.950902622,0.051969321,loss,ns,-0.00000125,0.00000545,-0.228758013,0.819207837,neg,ns,-0.003703455,0.001596149,-2.32024331,0.020976687,neg,ns,1.678263112,0.00000186,0.0000549,0.033805237,0.973054215,pos,ns,0.915537637,Ranbp17,Ranbp17_threeUTR,11,33297381,33297430,33297429,33297430,50,+,AGTGCAAAGGCAATCCCTCGAAGATCTCTTGCCAGCCCGATCAACATACG,3' UTR,11,33211795,33513746,301952,2,Ranbp17-202,216316,Ranbp17-202;Ranbp17-206;Ranbp17-203,Ranbp17;Ranbp17;Ranbp17,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,31,66011,ENSMUSG00000040594,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11260,cg03659513,-0.00000223,0.00000471,-0.473121925,0.63645916,loss,ns,0.00000183,0.00000801,0.228739159,0.819222479,pos,ns,0.007721789,0.00234543,3.292269579,0.001108635,pos,ns,2.955211594,-0.00022089,0.0000807,-2.738555059,0.006527887,neg,ns,0.551255093,Gm17994,Gm17994_Intergenic_downstream,8,57214770,57214819,57214770,57214771,50,-,CGTTGGCACTTCCACTGTGTACTTTTACTATAAATTGTTGTAGCATTTAT,Distal Intergenic,8,57291520,57292052,533,2,Gm17994-201,77282,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,3,100416239,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8574,cg08578017,-0.000000961,0.000001,-0.95705666,0.339284426,loss,ns,-0.00000039,0.0000017,-0.228718462,0.819238552,neg,ns,0.0000121,0.000499501,0.024148249,0.980749894,pos,ns,0.00844173,-0.0000149,0.0000172,-0.864987026,0.38771477,neg,ns,0.970432787,Dcaf10,Dcaf10_Exon,4,45359884,45359933,45359884,45359885,50,+,CGAATATGATACTAATACAAGACTCTTAGTAACATCAGGATTTGATGGAA,"Exon (Dcaf10-204/Dcaf10, exon 3 of 7)",4,45342101,45379759,37659,1,Dcaf10-204,17783,Dcaf10-204;Dcaf10-202;Dcaf10-201,Dcaf10;Dcaf10;Dcaf10,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,242418,ENSMUSG00000035572,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25411,cg08302835,0.0000223,0.00000854,2.615433926,0.009347325,gain,ns,-0.00000332,0.0000145,-0.228683367,0.819265807,neg,ns,0.015012827,0.004248581,3.533609593,0.000472338,pos,ns,3.325746901,-0.000478827,0.000146108,-3.277207148,0.001167388,neg,ns,0.522879351,Gm9341,Gm9341_Intron,7,136302082,136302131,136302082,136302083,50,-,CGAGTTCAGAACAAACACAGGGGGTATGTTTAGTTATTTGTTTTTGTAGT,"Intron (C030029H02Rik-203/C030029H02Rik-203, intron 3 of 3)",7,135952798,135953783,986,1,Gm9341-201,349333,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,28,668764,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5246,cg03346667,-0.0000169,0.00000294,-5.771616945,0.000000019,loss,yes,-0.00000114,0.00000499,-0.228594373,0.81933492,neg,ns,-0.002930567,0.001461664,-2.004952081,0.04583731,neg,ns,1.338780877,0.0000318,0.0000503,0.633291663,0.527010116,pos,ns,0.927745806,Npm1,Npm1_Exon,11,33155218,33155267,33155218,33155219,50,+,CGCCTGCAATTAAACCAAGGAGATAGGACCATATTAAAATGGAGGGGAGG,"Exon (Npm1-204/Npm1, exon 10 of 10)",11,33152287,33163206,10920,2,Npm1-201,7939,Npm1-201;Npm1-202;Npm1-205;Npm1-204;Npm1-203;Npm1-206,Npm1;Npm1;Npm1;Npm1;Npm1;Npm1,0;0;-753;0;7809;2010,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,18148,ENSMUSG00000057113,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15002,cg17641357,0.0000194,0.00000417,4.657874032,0.00000475,gain,ns,-0.00000162,0.00000709,-0.22850805,0.819401961,neg,ns,0.002968481,0.002077778,1.428680559,0.154102857,pos,ns,0.812189308,-0.000026,0.0000715,-0.364474383,0.715752292,neg,ns,0.091170345,Pou4f2,Pou4f2_Exon,8,78435638,78435687,78435638,78435639,50,-,CGGGCCAGCAGACTCTCATCCAGCCCGCCGAATATATTGCTCTGCAATTG,Promoter (<=1kb),8,78433010,78436645,3636,2,Pou4f2-201,958,Pou4f2-201,Pou4f2,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,23,18997,ENSMUSG00000031688,conserved gene and region,8,78435471,78435667,197,*,197,16,0.659898477,0.807997949,0.081218274,4.47E-11,CpGisland,TRUE,U13,Hc-P
12166,cg26974327,0.00000731,0.00000187,3.912239024,0.000112418,gain,ns,-0.000000725,0.00000317,-0.228506085,0.819403487,neg,ns,0.002305046,0.000929613,2.479575754,0.013685051,pos,ns,1.863753591,-0.0000864,0.000032,-2.701094709,0.007291245,neg,ns,0.034127034,Kcnh7,Kcnh7_Promoter,2,63184400,63184449,63184448,63184449,50,-,GGCGGGGAGTCACAAGGGCAATCGATCTGTTTCTCTTCTCCCAAACAGCG,Promoter (<=1kb),2,62786281,63184287,398007,2,Kcnh7-203,-162,Kcnh7-201;Kcnh7-203;Kcnh7-202;Kcnh7-204,Kcnh7;Kcnh7;Kcnh7;Kcnh7,0;-113;-230;-138,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,3,170738,ENSMUSG00000059742,conserved gene and region,2,63184224,63184449,226,*,226,23,0.712389381,0.852131148,0.101769912,5.06E-18,CpGisland,TRUE,NA,NRS
3410,cg24283073,-0.0000406,0.00000837,-4.85284978,0.00000193,loss,ns,0.00000324,0.0000142,0.228160223,0.819672105,pos,ns,0.010943742,0.004165226,2.627406312,0.009031737,pos,ns,2.044228717,-0.000740335,0.000143242,-5.16843051,0.000000424,neg,yes,0.687307151,A830031A19Rik,A830031A19Rik_Intron,11,24051245,24051294,24051293,24051294,50,+,TTACATCTAATACCTGCCAAAACCCAGATGGTGTGCCCACCCATCTCCCG,"Intron (A830031A19Rik-201/A830031A19Rik, intron 2 of 2)",11,24048955,24075054,26100,2,A830031A19Rik-201,23760,A830031A19Rik-201,A830031A19Rik,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,23,268391,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15289,cg20453321,-0.0000122,0.00000637,-1.906772758,0.057474332,loss,ns,0.00000247,0.0000108,0.228124695,0.8196997,pos,ns,-0.003653911,0.003172238,-1.151840198,0.250274281,neg,ns,0.601583778,0.0000969,0.000109093,0.887925898,0.375269012,pos,ns,0.853881646,Actn1,Actn1_Exon,12,80199010,80199059,80199010,80199011,50,-,CGCAGGATGATGGTCCAGATCATGCCCAGGGTCATCTTCACATTCCCATC,"Exon (Actn1-201/Actn1, exon 4 of 21)",12,80167547,80260371,92825,2,Actn1-201,61312,Actn1-201;Actn1-202;Actn1-204;Actn1-207,Actn1;Actn1;Actn1;Actn1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,10,109711,ENSMUSG00000015143,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20507,cg13028279,0.00000555,0.00000185,3.000772091,0.002911586,gain,ns,0.000000717,0.00000314,0.228104166,0.819715645,pos,ns,-0.000353864,0.00092083,-0.384287969,0.701028493,neg,ns,0.15426433,0.0000526,0.0000317,1.660474426,0.097830131,pos,ns,0.045622331,Smug1,Smug1_Promoter,15,103169185,103169234,103169185,103169186,50,+,CGCTGCCCTCCCCATGAACCTGCCTTTAATACTGAGGAAGTTATGAAACC,Promoter (2-3kb),15,103153290,103167092,13803,2,Smug1-202,-2093,Smug1-202;Smug1-205,Smug1;Smug1,-2093;-3669,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,12,71726,ENSMUSG00000036061,conserved gene and region,15,103168915,103169374,460,*,460,54,0.693478261,1,0.117391304,2.35E-45,CpGisland,TRUE,U3,Pr-B
9595,cg22751608,-0.00000103,0.000000403,-2.564838186,0.010792938,loss,ns,0.000000156,0.000000684,0.228103867,0.819715877,pos,ns,-0.0000703,0.000200343,-0.350704514,0.726048235,neg,ns,0.139034526,-0.00000892,0.00000689,-1.29467533,0.196395743,neg,ns,0.009213463,Epc2,Epc2_Exon,2,49451868,49451917,49451868,49451869,50,+,CGGCAAGGACATGCCTGATCTCAACGACTGCGTCTCCATCAACCGGGCCG,Promoter (<=1kb),2,49451486,49551948,100463,1,Epc2-201,382,Epc2-201,Epc2,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,14,227867,ENSMUSG00000069495,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
23890,cg12287368,-0.00000285,0.00000317,-0.899185401,0.369251825,loss,ns,0.00000123,0.00000538,0.228089457,0.819727069,pos,ns,0.002476575,0.0015771,1.570334858,0.117357322,pos,ns,0.93048981,-0.0000905,0.0000542,-1.66778965,0.096367265,neg,ns,0.944890368,Ctnnb1,Ctnnb1_fiveUTR,9,120930094,120930143,120930142,120930143,50,+,TGAATTTAGGATTTTGCCGCAGTATACATCTGCAGTCCCAGAATCCTCCG,Promoter (<=1kb),9,120929216,120950635,21420,1,Ctnnb1-203,878,Ctnnb1-203;Ctnnb1-201;Ctnnb1-208;Ctnnb1-209;Ctnnb1-214;Ctnnb1-204;Ctnnb1-207,Ctnnb1;Ctnnb1;Ctnnb1;Ctnnb1;Ctnnb1;Ctnnb1;Ctnnb1,0;0;0;0;0;0;-3675,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,9,12387,ENSMUSG00000006932,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10493,cg15362498,-0.0000817,0.0000148,-5.509464729,7.57E-08,loss,yes,0.00000575,0.0000252,0.228043311,0.819762911,pos,ns,-0.016425545,0.007384334,-2.224377185,0.026842973,neg,ns,1.571169388,-0.0000942,0.000253947,-0.371021545,0.710874904,neg,ns,0.779378303,Npas3,Npas3_Intron,12,53872523,53872572,53872523,53872524,50,-,CGTATTTTATGCCTAGTTGGAAAAATGAATAATGTAATAATATGCAAAAT,"Intron (Npas3-204/Npas3, intron 4 of 10)",12,53248157,54069532,821376,1,Npas3-204,624366,Npas3-204;Npas3-201;Npas3-203,Npas3;Npas3;Npas3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,83,103,27386,ENSMUSG00000021010,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10919,cg18176575,0.00000259,0.00000501,0.517074817,0.605472651,gain,ns,0.00000194,0.00000851,0.227930463,0.819850563,pos,ns,-0.003155007,0.002492722,-1.265687425,0.206575421,neg,ns,0.684921354,0.0000833,0.0000857,0.971738661,0.33193817,pos,ns,0.927246402,Tcf7l2,Tcf7l2_Intron,19,55887994,55888043,55887994,55887995,50,+,CGGAAGTTAATAAGATTGACTTCGTTGACAGAATTTACAATGAGAGCAGA,"Intron (Tcf7l2-213/Tcf7l2, intron 4 of 13)",19,55741820,55933229,191410,1,Tcf7l2-213,146174,Tcf7l2-213;Tcf7l2-201;Tcf7l2-208;Tcf7l2-211;Tcf7l2-212;Tcf7l2-206;Tcf7l2-204;Tcf7l2-205;Tcf7l2-222;Tcf7l2-215;Tcf7l2-214;Tcf7l2-207;Tcf7l2-202;Tcf7l2-209;Tcf7l2-210;Tcf7l2-217,Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,55,88,21416,ENSMUSG00000024985,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10682,cg16693246,0.0000562,0.0000109,5.135686413,0.000000498,gain,yes,-0.00000423,0.0000186,-0.2278388,0.819921762,neg,ns,0.012374197,0.005445315,2.272448511,0.023743937,pos,ns,1.624447263,-0.000258407,0.000187264,-1.379909387,0.168608946,neg,ns,0.172504151,Gpm6a,Gpm6a_fiveUTR,8,54955075,54955124,54955075,54955076,50,+,CGGAAGAGTAATTTGAATGAAATTACACTTGACAGCCTGTCTCCAAGCAA,Promoter (<=1kb),8,54954843,55060871,106029,1,Gpm6a-201,232,Gpm6a-201,Gpm6a,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,2,234267,ENSMUSG00000031517,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26298,cg11221738,-0.0000137,0.00000576,-2.38498669,0.017680474,loss,ns,-0.00000223,0.00000979,-0.227665666,0.820056247,neg,ns,-0.000193728,0.00286886,-0.067527769,0.946205088,neg,ns,0.024014721,0.0000542,0.0000987,0.549314954,0.583184798,pos,ns,0.918270912,Ralgapa2,Ralgapa2_Intron,2,146302327,146302376,146302375,146302376,50,+,AACCCGAGATTCTTCTGGGGCCCAGCAGGCTTCTGGTCCCTATGGAAACG,"Intron (Ralgapa2-202/Ralgapa2, intron 38 of 40)",2,146239879,146512004,272126,2,Ralgapa2-202,209628,Gm14117-201;Ralgapa2-202;Ralgapa2-211;Ralgapa2-210;Ralgapa2-205;Ralgapa2-208,Gm14117;Ralgapa2;Ralgapa2;Ralgapa2;Ralgapa2;Ralgapa2,-3171;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,26,241694,ENSMUSG00000037110,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7355,cg15597031,0.0000375,0.0000297,1.263172668,0.207476348,gain,ns,0.0000115,0.0000504,0.227638519,0.820077334,pos,ns,0.009550788,0.014769721,0.646646444,0.518339263,pos,ns,0.285385893,-0.001064369,0.000507929,-2.095506349,0.03693691,neg,ns,0.68080618,Crtac1,Crtac1_Intron,19,42388686,42388735,42388734,42388735,50,-,TCAACATCATTACCAAAACACATCAGAAAATTGGATGAAAGCGCAACACG,"Intron (Crtac1-203/Crtac1, intron 2 of 14)",19,42268287,42431785,163499,2,Crtac1-203,43050,Crtac1-203;Crtac1-201,Crtac1;Crtac1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,8,72832,ENSMUSG00000042401,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11575,cg19184757,0.00000836,0.00000361,2.314281895,0.021305674,gain,ns,0.0000014,0.00000614,0.227599972,0.820107277,pos,ns,0.0000308,0.001797859,0.017158938,0.986320858,pos,ns,0.005981783,-0.00000511,0.0000618,-0.082718006,0.934129152,neg,ns,0.913689908,Med12l,Med12l_Exon,3,59247371,59247420,59247419,59247420,50,+,CTTTCATTCCATGATTCATTAGCTACTTTCATTGCTATTCTGATAGCACG,"Exon (Med12l-206/Med12l, exon 23 of 44)",3,59006487,59318682,312196,1,Med12l-206,240884,Med12l-206;Med12l-202;Med12l-204;P2ry12-201;P2ry12-204,Med12l;Med12l;Med12l;P2ry12;P2ry12,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,9,329650,ENSMUSG00000056476,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23694,cg24763772,-0.00000156,0.00000186,-0.838236044,0.402543987,loss,ns,0.000000721,0.00000317,0.227470823,0.820207601,pos,ns,0.001835881,0.000928188,1.977920798,0.048822899,pos,ns,1.311376434,-0.0000818,0.0000319,-2.563196717,0.010843013,neg,ns,0.940306933,Wnk1,Wnk1_threeUTR,6,119925713,119925762,119925761,119925762,50,+,ATATATCACAGTGTTTCCACATCAAAACTGATGGCAAAGTTACATGTCCG,3' UTR,6,119923969,119927261,3293,2,Wnk1-208,1499,Rad52-212;Rad52-206;Rad52-207;Rad52-213;Rad52-201;Rad52-214;Wnk1-208;Wnk1-202;Wnk1-203;Wnk1-223;Wnk1-204;Wnk1-224;Wnk1-209;Wnk1-216;Wnk1-220;Wnk1-213,Rad52;Rad52;Rad52;Rad52;Rad52;Rad52;Wnk1;Wnk1;Wnk1;Wnk1;Wnk1;Wnk1;Wnk1;Wnk1;Wnk1;Wnk1,23010;23010;22985;22974;22937;7631;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,9,232341,ENSMUSG00000045962,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24996,cg25160217,-0.000000874,0.000000771,-1.134602762,0.257418346,loss,ns,0.000000298,0.00000131,0.227468924,0.820209076,pos,ns,0.001028352,0.000383541,2.681202396,0.007728517,pos,ns,2.111903847,-0.0000224,0.0000132,-1.698542702,0.090408734,neg,ns,0.974008054,Pank2,Pank2_Exon,2,131274090,131274139,131274138,131274139,50,+,CTGAAGGACCTGACTCTGTGTGGACGCAAAGGCAATCTGCACTTTATACG,"Exon (Pank2-201/Pank2, exon 2 of 5)",2,131262495,131283437,20943,1,Pank2-201,11595,Pank2-201;Pank2-204;Pank2-207;Pank2-208;Pank2-203;Pank2-202;Pank2-206;Pank2-205,Pank2;Pank2;Pank2;Pank2;Pank2;Pank2;Pank2;Pank2,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,3,74450,ENSMUSG00000037514,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27707,cg20020695,-0.000000399,0.00000766,-0.052107098,0.958476918,loss,ns,-0.00000296,0.000013,-0.227454942,0.820219937,neg,ns,0.003880639,0.003810882,1.018304555,0.3093273,pos,ns,0.509581749,0.0000255,0.000131056,0.194946779,0.845562315,pos,ns,0.888082138,Zbtb18,Zbtb18_threeUTR,1,177449666,177449715,177449714,177449715,50,+,TTGAAACTGTTAAGCTGAATAAAAACTTAAGCTGCAAATTGATAACTTCG,3' UTR,1,177444295,177450764,6470,1,Zbtb18-202,5371,Zbtb18-209;Zbtb18-211;Zbtb18-208;Zbtb18-203;Zbtb18-202;Zbtb18-204;Zbtb18-206;Zbtb18-210;Zbtb18-205;Zbtb18-212;Zbtb18-207;Zbtb18-201,Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18;Zbtb18,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,22,30928,ENSMUSG00000063659,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3837,cg22882174,-0.00000379,0.00000242,-1.562633754,0.119159005,loss,ns,0.000000936,0.00000412,0.227453424,0.820221117,pos,ns,-0.000946584,0.001206044,-0.784866771,0.433131067,neg,ns,0.363380664,0.000046,0.0000415,1.109459753,0.268091807,pos,ns,0.933460808,Fgfr1,Fgfr1_threeUTR,8,25563439,25563488,25563439,25563440,50,-,CGGGGAGTATGTGTGTAAGGTTTCCAATTATATTGGTGAAGCTAACCAGT,3' UTR,8,25518759,25575718,56960,1,Fgfr1-201,44680,Fgfr1-201;Fgfr1-214;Fgfr1-215;Fgfr1-203;Fgfr1-202;Fgfr1-213;Fgfr1-208;Fgfr1-209;Fgfr1-206;Fgfr1-216;Fgfr1-204;Fgfr1-219,Fgfr1;Fgfr1;Fgfr1;Fgfr1;Fgfr1;Fgfr1;Fgfr1;Fgfr1;Fgfr1;Fgfr1;Fgfr1;Fgfr1,0;0;0;0;0;0;0;0;0;-2512;-3362;-3378,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,7,8,14182,ENSMUSG00000031565,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8270,cg25017875,0.000116744,0.0000181,6.450169725,4.29E-10,gain,yes,0.00000699,0.0000307,0.227435386,0.820235128,pos,ns,0.066957635,0.009008246,7.432927126,1.04E-12,pos,yes,11.98157423,-0.001302848,0.000309793,-4.205544432,0.0000341,neg,ns,0.500580785,Zcchc7,Zcchc7_Intron,4,44908365,44908414,44908365,44908366,50,-,CGGTGGATGCTGGGTTATGCCAAAACCAACAGGCTGTAAAGTACCTTGTT,"Intron (Zcchc7-203/Zcchc7, intron 5 of 8)",4,44756568,44932203,175636,1,Zcchc7-203,151797,Zcchc7-203;Zcchc7-207;Zcchc7-205;Zcchc7-201;Zcchc7-202,Zcchc7;Zcchc7;Zcchc7;Zcchc7;Zcchc7,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,27,27,319885,ENSMUSG00000035649,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23363,cg09358495,-0.0000779,0.0000192,-4.05362329,0.0000638,loss,ns,0.00000742,0.0000327,0.227347226,0.820303614,pos,ns,0.069717435,0.009567732,7.286725593,2.65E-12,pos,yes,11.57672563,-0.002443288,0.000329034,-7.425650765,1.09E-12,neg,yes,0.398170342,Hrk,Hrk_Intron,5,118167486,118167535,118167534,118167535,50,+,AATAATCGTCCCATTAAAATTAATGTCCATGAAGTGAGCCGTTAAAAGCG,"Intron (Hrk-202/Hrk, intron 1 of 1)",5,118164648,118184828,20181,1,Hrk-202,2838,Hrk-202;Hrk-201,Hrk;Hrk,0;-2213,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,4,12123,ENSMUSG00000046607,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
345,cg18026227,-0.0000201,0.00000831,-2.420332528,0.016080866,loss,ns,0.00000321,0.0000141,0.227327988,0.820318559,pos,ns,-0.010632433,0.004137345,-2.569868444,0.010640766,neg,ns,1.973027113,0.000267894,0.000142283,1.882827008,0.060660054,pos,ns,0.1554553,Zfhx4,Zfhx4_fiveUTR,3,5218543,5218592,5218543,5218544,50,+,CGGGAATAGACACACAAAGACATGCGCACTCAACTTAATCAGCCATTTTT,Promoter (<=1kb),3,5218546,5331246,112701,1,Zfhx4-202,0,Zfhx4-203;Zfhx4-202;Zfhx4-201;Zfhx4-204,Zfhx4;Zfhx4;Zfhx4;Zfhx4,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,10,77,80892,ENSMUSG00000025255,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
20009,cg07296993,0.0000224,0.0000051,4.39513468,0.0000152,gain,ns,0.00000197,0.00000867,0.227289604,0.820348378,pos,ns,-0.003296329,0.002539682,-1.297929835,0.195276326,neg,ns,0.709350405,0.000179766,0.0000873,2.05824379,0.040402325,pos,ns,0.878511213,Spryd3,Spryd3_Exon,15,102133518,102133567,102133518,102133519,50,+,CGGTAGTGCAGGTTGAGGTCATCCATCTTGTTCATGAGAACAAACCTGCC,"Exon (Spryd3-202/Spryd3, exon 2 of 10)",15,102116528,102136192,19665,2,Spryd3-202,2625,Spryd3-202;Spryd3-203;Spryd3-201;Spryd3-204,Spryd3;Spryd3;Spryd3;Spryd3,0;0;-4634;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,223918,ENSMUSG00000036966,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23593,cg24580312,-0.0000151,0.0000087,-1.737640315,0.083267311,loss,ns,0.00000336,0.0000148,0.227171604,0.820440047,pos,ns,0.01157347,0.004328042,2.674066155,0.007891051,pos,ns,2.102865151,-0.000405303,0.000148841,-2.723059425,0.006834437,neg,ns,0.815922804,Cand1,Cand1_Exon,10,119213683,119213732,119213683,119213684,50,+,CGCTCTTTAAATCTGGATATTAGTGCAGGAGAGACGGTCTTGTAGAATTC,"Exon (Cand1-201/Cand1, exon 8 of 15)",10,119199255,119240055,40801,2,Cand1-201,26323,Cand1-201;Cand1-204;Cand1-202,Cand1;Cand1;Cand1,0;-1074;25571,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,71902,ENSMUSG00000020114,conserved gene and region,10,119213683,119213832,150,*,150,11,0.52,1.111111111,0.073333333,0.000000279,CpGisland,TRUE,U10,Tr-S
3379,cg01392682,0.00000164,0.00000195,0.8378242,0.402774928,gain,ns,0.000000754,0.00000332,0.227113605,0.820485105,pos,ns,0.00256973,0.000972677,2.641915084,0.008662124,pos,ns,2.062375624,-0.0000357,0.0000335,-1.065841552,0.287324683,neg,ns,0.958333416,Bcl6,Bcl6_Exon,16,23969965,23970014,23969965,23969966,50,+,CGGTCACACTTGTAGGGTTTGTCACTGTGGGTCTGCAGCGTGTGCCTCTT,"Exon (Bcl6-201/Bcl6, exon 7 of 10)",16,23965052,23988852,23801,2,Bcl6-201,18838,Bcl6-201;Bcl6-202,Bcl6;Bcl6,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,18,12053,ENSMUSG00000022508,mapped to different genes,16,23969870,23970051,182,*,182,12,0.593406593,0.758333333,0.065934066,0.000000213,CpGisland,TRUE,U11,Tr-P
24622,cg23225714,0.0000683,0.0000143,4.780971036,0.0000027,gain,ns,-0.00000551,0.0000243,-0.227040151,0.820542171,neg,ns,0.026403844,0.007114326,3.711362778,0.000244311,pos,ns,3.612057113,-0.000639853,0.000244661,-2.615261769,0.009351935,neg,ns,0.510358285,Sephs2,Sephs2_Exon,7,127272757,127272806,127272757,127272758,50,-,CGAGCCGCCTGTTCTCTTGGCAGACAAATCAGTAATCCCCCAGAGGTTTC,"Exon (Sephs2-201/Sephs2, exon 1 of 1)",7,127271879,127274055,2177,2,Sephs2-201,1249,Sephs2-201,Sephs2,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,20768,ENSMUSG00000049091,conserved gene and region,7,127272628,127272763,136,*,136,11,0.529411765,1.157894737,0.080882353,0.000000102,CpGisland,TRUE,NA,NRS
19530,cg05742632,0.000000901,0.0000161,0.055912816,0.95544728,gain,ns,0.00000622,0.0000274,0.226988462,0.820582327,pos,ns,0.018908633,0.008022397,2.356980463,0.019045797,pos,ns,1.720200857,-0.000240426,0.00027589,-0.871458566,0.384178213,neg,ns,0.519197233,Gm12687,Gm12687_Intergenic_downstream,4,99574289,99574338,99574337,99574338,50,+,TATCAAAGAGTAATAGAATTCCATCAATCCTGCATCATCCCCGAGGGTCG,Distal Intergenic,4,99615817,99616522,706,2,Gm12687-201,42184,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,7,100417847,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13083,cg04813883,0.000000358,0.000000429,0.834183319,0.404820023,gain,ns,-0.000000166,0.000000729,-0.226923365,0.820632902,neg,ns,0.00046639,0.000213707,2.182376024,0.029832111,pos,ns,1.52531602,-0.0000171,0.00000735,-2.33043324,0.020424636,neg,ns,0.01079894,Arf6,Arf6_Exon,12,69373087,69373136,69373135,69373136,50,+,GGCTCGCCAGGAGCTGCACCGCATTATCAATGACCGGGAGATGAGGGACG,Promoter (<=1kb),12,69372150,69373783,1634,1,Arf6-201,937,Arf6-201;Gm18113-201,Arf6;Gm18113,0;-3064,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,8,11845,ENSMUSG00000044147,conserved gene and region,12,69371680,69373175,1496,*,1496,186,0.703877005,1.010385046,0.124331551,4.87E-160,CpGisland,TRUE,NA,NRS
4633,cg21121975,-0.00000378,0.00000149,-2.539718386,0.011582314,loss,ns,-0.000000573,0.00000253,-0.226794273,0.820733197,neg,ns,-0.000704374,0.000740628,-0.951049781,0.342319997,neg,ns,0.46556773,0.0000184,0.0000255,0.723231938,0.47008273,pos,ns,0.962098843,Sptan1,Sptan1_Exon,2,30001073,30001122,30001121,30001122,50,-,TGCTTTTGCTGTGCCCCCTCTGTGCAGGACACGCATAACTAAGGAGGCCG,"Exon (Sptan1-203/Sptan1, exon 23 of 57)",2,29965560,30031448,65889,1,Sptan1-205,35513,Sptan1-205;Sptan1-204;Sptan1-203;Sptan1-202;Sptan1-201;Sptan1-208;Sptan1-211;Sptan1-216,Sptan1;Sptan1;Sptan1;Sptan1;Sptan1;Sptan1;Sptan1;Sptan1,0;0;0;0;0;0;-762;-2966,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,7,20740,ENSMUSG00000057738,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25354,cg14676415,-0.0000255,0.00000826,-3.091685348,0.002171059,loss,ns,-0.00000318,0.000014,-0.226697696,0.820808232,neg,ns,0.014337164,0.004108939,3.489261797,0.000554521,pos,ns,3.256081987,-0.000398175,0.000141306,-2.817822698,0.005145627,neg,ns,0.804855638,Mki67,Mki67_Intron,7,135757580,135757629,135757628,135757629,50,+,TTCATAGCAGTAATTTGCATAACTAAATCAGTTTTCACTGATGAGAGACG,"Intron (Gm36431-202/Gm36431-202, intron 1 of 3)",7,135689784,135716361,26578,2,Mki67-201,-41219,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,17345,ENSMUSG00000031004,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16392,cg21137565,0.00000148,0.00000253,0.585084602,0.558916454,gain,ns,-0.000000973,0.00000429,-0.226626534,0.820863521,neg,ns,-0.000281121,0.001257995,-0.223467826,0.823318609,neg,ns,0.084432068,-0.0000113,0.0000433,-0.261869032,0.793596328,neg,ns,0.937372434,Trip12,Trip12_Exon,1,84814857,84814906,84814857,84814858,50,+,CGGCAGTGTTCCTCTGTGAACGTCGCAGTGACCCCCCTGGATTGTTATTA,"Exon (Trip12-201/Trip12, exon 2 of 41)",1,84721189,84839304,118116,2,Trip12-201,24398,Trip12-201;Trip12-206;Trip12-207;Trip12-205;Trip12-208;Trip12-211;Trip12-214;Trip12-210,Trip12;Trip12;Trip12;Trip12;Trip12;Trip12;Trip12;Trip12,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,11,14897,ENSMUSG00000026219,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1205,cg07847209,0.00000281,0.00000986,0.284670504,0.776086662,gain,ns,0.0000038,0.0000168,0.226514803,0.820950334,pos,ns,0.002529853,0.004909508,0.515296645,0.606712999,pos,ns,0.2170167,-0.00000286,0.000168838,-0.016939931,0.986495434,neg,ns,0.747299469,Bcor,Bcor_fiveUTR,X,12061562,12061611,12061610,12061611,50,-,TCATCCAGCTGTGAACGTTCCCATACAGGGGGGTTGCTGAGAGCATGTCG,5' UTR,20,12036740,12080553,43814,2,Bcor-202,18942,Bcor-202;Bcor-203;Bcor-204;Bcor-206;Bcor-201;Bcor-207;Bcor-205,Bcor;Bcor;Bcor;Bcor;Bcor;Bcor;Bcor,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,74,71458,ENSMUSG00000040363,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19789,cg21608448,0.0000119,0.00000414,2.885229374,0.00418551,gain,ns,0.00000159,0.00000703,0.226475069,0.820981207,pos,ns,-0.000762564,0.002060145,-0.370150512,0.711523111,neg,ns,0.147810989,-0.000150672,0.0000708,-2.126685515,0.034235819,neg,ns,0.851109059,Msl2,Msl2_Exon,9,101101809,101101858,101101857,101101858,50,-,GGGTGTAAATGTGGGCGTGCTACTCAAAATCCAAGTGTTCTTACATGCCG,"Exon (Msl2-201/Msl2, exon 2 of 2)",9,101074762,101104800,30039,1,Msl2-201,27047,Msl2-202;Msl2-201;Ppp2r3a-202;Ppp2r3a-201,Msl2;Msl2;Ppp2r3a;Ppp2r3a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,Exon,12,19,77853,ENSMUSG00000066415,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19922,cg22174647,-0.00000073,0.00000291,-0.25106506,0.801930142,loss,ns,-0.00000112,0.00000494,-0.226397515,0.821041467,neg,ns,0.002396534,0.00144715,1.656036844,0.098726192,pos,ns,1.005567614,-0.0000998,0.0000498,-2.006122036,0.045711657,neg,ns,0.943000793,Ogt,Ogt_Exon,X,101654356,101654405,101654404,101654405,50,+,CTTTTTTCTTCTTTGTTTGGATTGCAGCATTCTGCTCTTCTGATGATGCG,"Exon (Ogt-204/Ogt, exon 4 of 4)",20,101640060,101682940,42881,1,Ogt-202,14296,Ogt-202;Ogt-206;Ogt-201;Ogt-205;Ogt-204;Ogt-207;Ogt-203,Ogt;Ogt;Ogt;Ogt;Ogt;Ogt;Ogt,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,32,33,108155,ENSMUSG00000034160,conserved gene and region,X,101654404,101654477,74,*,74,8,0.608108108,1.174603175,0.108108108,0.0000012,CpGisland,TRUE,U10,Tr-S
11639,cg23087015,0.000283312,0.00000765,37.04453264,7.01E-116,gain,yes,-0.00000294,0.000013,-0.226316943,0.821104072,neg,ns,0.010861166,0.003806421,2.853380194,0.004616728,pos,ns,2.335665712,0.000373077,0.000130902,2.850040759,0.004664208,pos,ns,0.234166889,Celf6,Celf6_Exon,9,59578626,59578675,59578626,59578627,50,-,CGGCCTCCACAAAGGTGCGCGGGGTCAGCCCAGCCCAGCCCAGCCCCAAT,Promoter (<=1kb),9,59577917,59607292,29376,1,Celf6-207,709,Celf6-207;Celf6-203;Celf6-205;Celf6-201,Celf6;Celf6;Celf6;Celf6,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,8,76183,ENSMUSG00000032297,conserved gene but different region,9,59577836,59578646,811,*,811,79,0.700369914,0.79687811,0.097410604,4.77E-59,CpGisland,TRUE,NA,NRS
13474,cg12211843,-0.0000212,0.00000569,-3.723499742,0.000233336,loss,ns,0.00000219,0.00000966,0.226254614,0.821152503,pos,ns,-0.002175746,0.002829947,-0.768829061,0.442580128,neg,ns,0.35400809,-0.0000373,0.0000973,-0.383563081,0.701565225,neg,ns,0.854993333,Camta2,Camta2_fiveUTR,11,70686373,70686422,70686421,70686422,50,+,TTCATGGTGAGGGCTCCAGGGGGCAAGGTCACCCCCGGCCTGAGGGGCCG,Promoter (<=1kb),11,70669463,70686389,16927,2,Camta2-208,0,Camta2-208;Camta2-204;Camta2-206;Camta2-201;Camta2-202;Camta2-203;Camta2-205;Camta2-207;Camta2-209;Inca1-201;Inca1-202;Inca1-203;Inca1-205;Inca1-204,Camta2;Camta2;Camta2;Camta2;Camta2;Camta2;Camta2;Camta2;Camta2;Inca1;Inca1;Inca1;Inca1;Inca1,0;0;0;0;0;0;0;0;0;13733;13733;13733;13733;13687,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,4,216874,ENSMUSG00000040712,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8233,cg25743059,-0.0000399,0.0000062,-6.43393296,4.71E-10,loss,yes,-0.00000238,0.0000105,-0.226241302,0.821162847,neg,ns,-0.004282689,0.003087532,-1.387091416,0.166410361,neg,ns,0.778819638,-0.0000309,0.00010618,-0.290868685,0.771346256,neg,ns,0.93540537,Ebf1,Ebf1_Exon,11,44883913,44883962,44883961,44883962,50,+,AGGCTTGACCCCTCGGAAGGTACGCCCTCTTATCTGGAACATGGTAGGCG,"Exon (Ebf1-203/Ebf1, exon 8 of 16)",11,44617317,45004995,387679,1,Ebf1-203,266596,Ebf1-203;Ebf1-202;Ebf1-201,Ebf1;Ebf1;Ebf1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,15,80,13591,ENSMUSG00000057098,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7493,cg12353189,0.000000951,0.000000553,1.720901763,0.086266422,gain,ns,0.000000212,0.000000939,0.226240337,0.821163597,pos,ns,-0.000477871,0.000274987,-1.737793277,0.0832403,neg,ns,1.079666362,0.0000281,0.00000946,2.972281888,0.003187495,pos,ns,0.990616455,Mrps9,Mrps9_Intron,1,42888851,42888900,42888851,42888852,50,+,CGCTAGGCCTGTCAACTTGTTACACGGATGGGTTGCACGCAGCGAAGCTG,"Intron (Mrps9-201/Mrps9, intron 5 of 10)",1,42851233,42905682,54450,1,Mrps9-201,37618,Mrps9-201;Mrps9-202;Mrps9-203;Mrps9-204;Mrps9-206,Mrps9;Mrps9;Mrps9;Mrps9;Mrps9,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,12,69527,ENSMUSG00000060679,conserved gene and region,1,42888767,42888894,128,*,128,10,0.5703125,0.992248062,0.078125,0.000000662,CpGisland,TRUE,U10,Tr-S
20890,cg21767196,0.0000861,0.00000922,9.34473852,1.88E-18,gain,yes,0.00000354,0.0000157,0.22622876,0.821172592,pos,ns,0.00782285,0.004588301,1.704955705,0.089204516,pos,ns,1.04961316,0.0000282,0.000157791,0.178892291,0.858139135,pos,ns,0.132850912,Pax6,Pax6_Exon,2,105683820,105683869,105683868,105683869,50,+,TTCCTCAGGTCACAGCGGAGTGAATCAGCTCGGTGGTGTCTTTGTCAACG,"Exon (Pax6-206/Pax6, exon 4 of 13)",2,105668900,105697364,28465,1,Pax6-206,14920,Pax6-206;Pax6-207;Pax6-210;Pax6-214;Pax6-208;Pax6-202;Pax6-205;Pax6-225;Pax6-204;Pax6-201;Pax6-203;Pax6-224;Pax6-219;Pax6-221;Pax6-213;Pax6-211;Pax6-222;Pax6-212;Pax6-215;Pax6-223;Pax6-209;Pax6-216,Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,31,78,18508,ENSMUSG00000027168,conserved gene but different region,2,105683814,105684069,256,*,256,19,0.62109375,0.818855219,0.07421875,2.40E-12,CpGisland,TRUE,U13,Hc-P
22385,cg09185777,0.000106115,0.0000111,9.590680473,3.03E-19,gain,yes,-0.00000425,0.0000188,-0.226211468,0.821186029,neg,ns,0.021090189,0.005506882,3.829787651,0.000155216,pos,ns,3.80906401,-0.000603468,0.000189381,-3.186522436,0.001586699,neg,ns,0.197621082,Arl15,Arl15_Intron,13,113880280,113880329,113880280,113880281,50,-,CGTTTGTCAGATTTATGGTAATGGTTCACCAAAGCCTTCCTGTCATTGAC,"Intron (Arl15-201/Arl15, intron 1 of 4)",13,113794505,114157461,362957,1,Arl15-201,85775,Arl15-201;Arl15-203;Arl15-202,Arl15;Arl15;Arl15,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,6,218639,ENSMUSG00000042348,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3638,cg11533598,-0.00000356,0.00000171,-2.084984473,0.037888677,loss,ns,0.000000657,0.0000029,0.22620952,0.821187543,pos,ns,-0.001606772,0.000850594,-1.889000677,0.059824964,neg,ns,1.223117555,0.0000281,0.0000293,0.962239295,0.336679373,pos,ns,0.968143809,Amd-ps6,Amd-ps6_Intergenic_upstream,9,24888448,24888497,24888448,24888449,50,+,CGCCACATTATCACAGAAAGGTGGATTAGAAGTTATCTCCGCTCTGCTTT,Distal Intergenic,9,24826343,24827345,1003,2,Amd-ps6-201,-61103,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,666251,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26137,cg10210458,0.0000124,0.00001,1.24052217,0.215720367,gain,ns,0.00000385,0.000017,0.22614243,0.821239675,pos,ns,-0.008964003,0.004993529,-1.795124001,0.073607912,neg,ns,1.133075502,0.000279746,0.000171727,1.629017758,0.104324994,pos,ns,0.740367072,Shank2,Shank2_fiveUTR,7,144175898,144175947,144175898,144175899,50,-,CGCTGCCAAAGTCAGAGGGAAAATGAAGTCTTTGTTAAATGCCTTCACCA,5' UTR,7,144001928,144424494,422567,1,Shank2-203,173970,Shank2-203;Shank2-206;Shank2-202,Shank2;Shank2;Shank2,0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,5,210274,ENSMUSG00000037541,conserved gene and region,7,144175748,144175899,152,*,152,19,0.736842105,0.922094508,0.125,8.97E-17,CpGisland,TRUE,U11,Tr-P
11822,cg12299488,0.0000297,0.00000635,4.671827819,0.00000446,gain,ns,-0.00000244,0.0000108,-0.226001253,0.821349378,neg,ns,0.008020446,0.003161948,2.536552302,0.011685375,pos,ns,1.932357351,-0.000155479,0.000108739,-1.429836348,0.153771029,neg,ns,0.062743903,Rbms1,Rbms1_Intron,2,60962066,60962115,60962066,60962067,50,-,CGTAAAAGTAGAAATCAGTAACCAGGTGAAGTGCCACACCGCACAAAGAT,"Intron (Rbms1-201/Rbms1, intron 1 of 13)",2,60750193,60963192,213000,2,Rbms1-201,1077,Rbms1-201,Rbms1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,4,56878,ENSMUSG00000026970,conserved gene but different region,2,60962066,60962679,614,*,614,66,0.731270358,0.806544065,0.107491857,1.67E-52,CpGisland,TRUE,NA,NRS
20569,cg26616840,0.0000207,0.0000036,5.744933004,0.000000022,gain,yes,0.00000138,0.00000612,0.225958778,0.821382385,pos,ns,0.007338648,0.001792146,4.094894198,0.0000539,pos,ns,4.26804834,-0.000031,0.0000616,-0.502905158,0.615388053,neg,ns,0.091233898,Slain1,Slain1_Exon,14,103650445,103650494,103650493,103650494,50,+,AAGCTGCAGGAGCTGGTGCGCAAGCTGGAGAAGCAGAACGAGCAGCTGCG,Promoter (<=1kb),14,103650228,103704907,54680,1,Slain1-201,217,Slain1-201;Slain1-203,Slain1;Slain1,0;-152,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,105439,ENSMUSG00000055717,mapped to different genes,14,103650105,103650973,869,*,869,104,0.758342923,0.833819242,0.119677791,8.27E-88,CpGisland,TRUE,NA,NRS
22499,cg23789062,0.00000141,0.00000498,0.283362976,0.777087746,gain,ns,0.00000191,0.00000846,0.225818211,0.821491619,pos,ns,0.002220287,0.002477169,0.896300126,0.37078797,pos,ns,0.430874365,-0.0000813,0.0000852,-0.954069232,0.340791945,neg,ns,0.54941691,Gm13975,Gm13975_Intron,2,114872302,114872351,114872350,114872351,50,-,TGGGAGACTTTCTGGACAGAGCCTCTGGTAAACAAATTAGATATAAACCG,"Intron (Gm13974-201/Gm13974-201, intron 2 of 8)",2,114708112,114708893,782,1,Gm13975-201,164239,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,9,100043219,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22954,cg23488433,-0.00000918,0.00000393,-2.33562904,0.020148081,loss,ns,0.00000151,0.00000668,0.225623774,0.821642721,pos,ns,-0.000784473,0.001956224,-0.401013941,0.688686121,neg,ns,0.161978669,-0.0000346,0.0000673,-0.514171838,0.607498186,neg,ns,0.893840359,Gm13991,Gm13991_Intergenic_downstream,2,116324435,116324484,116324435,116324436,50,+,CGGGGCCATGAAAGTGGTTTATGTTTGAAATGTATCAGCTGGAAAGTACT,Distal Intergenic,2,116527843,116528490,648,2,Gm13991-201,204006,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,14,20,433464,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2983,cg20049845,0.00000128,0.00000388,0.330601434,0.741168892,gain,ns,0.00000149,0.00000659,0.225597564,0.82166309,pos,ns,-0.000435876,0.001929838,-0.22586156,0.821457933,neg,ns,0.085414672,-0.0000331,0.0000664,-0.499104661,0.618059651,neg,ns,0.950514457,Lrmda,Lrmda_Intron,14,22255557,22255606,22255557,22255558,50,+,CGCTCTGACAGGGATTATTATTTATTTGTCATCTTGGATGTAATAAGCTG,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,235845,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206,Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10015,cg12938158,-0.00000762,0.00000143,-5.332582664,0.000000187,loss,yes,0.000000547,0.00000243,0.225594656,0.82166535,pos,ns,0.00088851,0.00071079,1.250031637,0.212230817,pos,ns,0.673191554,-0.0000152,0.0000244,-0.621737314,0.534571571,neg,ns,0.046566477,Jade2,Jade2_Promoter,11,51858174,51858223,51858222,51858223,50,-,TTTTGGCGCCATATTAATGACGTACTTAAAATTTGCCATTTCTCCCTGCG,Promoter (<=1kb),11,51813455,51857653,44199,2,Jade2-201,-570,Jade2-201;Jade2-202;Jade2-203;Jade2-204,Jade2;Jade2;Jade2;Jade2,0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,4,6,76901,ENSMUSG00000020387,conserved gene and region,11,51858180,51858418,239,*,239,21,0.527196653,1.276125095,0.087866109,4.12E-15,CpGisland,TRUE,NA,NRS
20532,cg23753616,0.00000743,0.0000199,0.372729214,0.7096047,gain,ns,0.00000764,0.0000339,0.2255933,0.821666404,pos,ns,0.011062614,0.009920194,1.115161056,0.265645157,pos,ns,0.575698098,-0.000002,0.000341155,-0.005870865,0.995319531,neg,ns,0.524198186,Gpr84,Gpr84_Exon,15,103309074,103309123,103309122,103309123,50,-,CTGAGCCCAAGCACAAAGTAGATGCCCATGAGGATGGTGGTGTAAGGCCG,"Exon (Gm49482-201/Gm49482-201, exon 2 of 2)",15,103308235,103310612,2378,2,Gpr84-201,1489,Gpr84-201;Zfp385a-202;Zfp385a-201;Zfp385a-203,Gpr84;Zfp385a;Zfp385a;Zfp385a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,5,80910,ENSMUSG00000063234,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U4,Pr-F
16631,cg27315265,-0.0000142,0.00000628,-2.253704994,0.024913092,loss,ns,-0.00000241,0.0000107,-0.225565974,0.82168764,neg,ns,0.000979909,0.003125092,0.313561677,0.754064847,pos,ns,0.122591304,-0.000133342,0.000107472,-1.240716396,0.215648682,neg,ns,0.929832807,Gm49059,Gm49059_Intergenic_downstream,14,85671090,85671139,85671138,85671139,50,+,TATGAGTGAACTTGACCATTGCAATAGTTTCCATAATCGCTTCCCTACCG,Distal Intergenic,14,85655204,85655897,694,1,Gm49059-201,15886,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2489,cg16882525,0.00000396,0.000006,0.660497199,0.50942531,gain,ns,0.0000023,0.0000102,0.225459614,0.821770299,pos,ns,0.003938471,0.002983864,1.319923345,0.187834454,pos,ns,0.726224744,-0.000194991,0.000102615,-1.900221112,0.058331748,neg,ns,0.877611687,Anxa1,Anxa1_Intergenic_downstream,19,19942802,19942851,19942802,19942803,50,-,CGAAGGACACAAAAAGGCCCATAAAACATCAGAAAGGTTATAGAGGTCTA,Distal Intergenic,19,20373556,20375587,2032,2,Anxa1-202,432785,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,8,16952,ENSMUSG00000024659,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15431,cg06068923,-0.0000127,0.00000838,-1.518414335,0.129929136,loss,ns,0.00000321,0.0000142,0.225447251,0.821779907,pos,ns,-0.00737396,0.004169366,-1.768604795,0.077943226,neg,ns,1.108221626,0.000211123,0.000143384,1.472429777,0.141919376,pos,ns,0.115398715,Arrdc3,Arrdc3_Exon,13,80884740,80884789,80884788,80884789,50,+,TAGGAGACTCTAGGCTTGTTTTTCTAAGTTTCCACCCTTTGTTAGAAGCG,"Exon (1700023H06Rik-201/1700023H06Rik-201, exon 2 of 2)",13,80883384,80889643,6260,1,Arrdc3-202,1356,Arrdc3-202;Arrdc3-203;Arrdc3-201;Arrdc3-205,Arrdc3;Arrdc3;Arrdc3;Arrdc3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,8,105171,ENSMUSG00000074794,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
1432,cg15277613,-0.0000109,0.00000512,-2.131819031,0.033807764,loss,ns,-0.00000196,0.00000871,-0.225403243,0.821814109,neg,ns,-0.006641917,0.002550403,-2.604261264,0.009650713,neg,ns,2.015440581,0.00016083,0.0000877,1.833693048,0.067658152,pos,ns,0.891941027,Drosha,Drosha_Exon,15,12867601,12867650,12867649,12867650,50,-,TTGTTTGAAGACAGCCCTCCCTGCTGCCCAAGATTTCATTTCATGCCACG,"Exon (Drosha-207/Drosha, exon 15 of 35)",15,12824815,12935290,110476,1,Drosha-207,42786,Drosha-207;Drosha-201;Drosha-205,Drosha;Drosha;Drosha,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,14000,ENSMUSG00000022191,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11086,cg23493031,0.0000163,0.00000327,4.965268887,0.00000114,gain,yes,-0.00000125,0.00000556,-0.225397509,0.821818566,neg,ns,0.002446925,0.001629774,1.501389134,0.134272799,pos,ns,0.872011957,-0.0000672,0.000056,-1.198725262,0.231550333,neg,ns,0.042044441,Nkx2-1,Nkx2-1_Exon,12,56535354,56535403,56535354,56535355,50,+,CGAGATAATTAGCTTACATGCTGATGACAAGGTAAACACCTTTAAGTTTC,"Exon (Gm26973-202/Gm26973-202, exon 1 of 3)",12,56531958,56536908,4951,2,Nkx2-1-201,1505,Nkx2-1-202;Nkx2-1-201,Nkx2-1;Nkx2-1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,29,21869,ENSMUSG00000001496,mapped to different genes,12,56535178,56535355,178,*,178,14,0.573033708,0.967391304,0.078651685,1.48E-09,CpGisland,TRUE,U13,Hc-P
20092,cg01903440,-0.0000275,0.00000913,-3.014540462,0.002786257,loss,ns,-0.00000349,0.0000155,-0.225306708,0.821889135,neg,ns,-0.008481968,0.004542517,-1.867239688,0.062811768,neg,ns,1.20195898,0.00027972,0.000156217,1.790590979,0.074334599,pos,ns,0.682219526,Kctd12,Kctd12_Intergenic_downstream,14,102516713,102516762,102516761,102516762,50,-,CAAATGCAAGATGCCCTTTCATCTTCTACAAATGATTTTCTCTTAATCCG,Distal Intergenic,14,102977537,102981551,4015,2,Kctd12-201,464838,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,5,239217,ENSMUSG00000098557,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9513,cg10988052,-0.0000662,0.0000103,-6.426958815,4.91E-10,loss,yes,-0.00000394,0.0000175,-0.225285315,0.821905763,neg,ns,-0.013553287,0.005123546,-2.645294423,0.008578009,neg,ns,2.066613487,0.000307699,0.000176198,1.74632186,0.081745553,pos,ns,0.696270861,Wnk2,Wnk2_Exon,13,49050560,49050609,49050560,49050561,50,-,CGTTGGGTGGTAAACCGTCCAGCCTGCAAATGAATATAAAGGGAAGAAAA,"Exon (Wnk2-205/Wnk2, exon 26 of 30)",13,49036303,49148012,111710,2,Wnk2-211,97403,Wnk2-211;Wnk2-201;Wnk2-202;Wnk2-205;Wnk2-210;Wnk2-207;Wnk2-206;Wnk2-209;Wnk2-204;Wnk2-203,Wnk2;Wnk2;Wnk2;Wnk2;Wnk2;Wnk2;Wnk2;Wnk2;Wnk2;Wnk2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,2,75607,ENSMUSG00000037989,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1593,cg21797039,-0.0000656,0.0000113,-5.801042211,1.63E-08,loss,yes,-0.00000432,0.0000192,-0.225267838,0.821919345,neg,ns,-0.0140133,0.005624468,-2.491489047,0.013243445,neg,ns,1.877999012,0.000189017,0.000193425,0.977208907,0.329227698,pos,ns,0.834562914,Zfp521,Zfp521_Intron,18,13810064,13810113,13810112,13810113,50,-,CTTCCTGTCAAGTTAACTCCAATTTGTTGGCTTTTGAAGGCAACAAAACG,"Intron (Zfp521-201/Zfp521, intron 5 of 7)",18,13687013,13972787,285775,2,Zfp521-201,162674,Zfp521-201;Zfp521-205;Zfp521-204,Zfp521;Zfp521;Zfp521,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,81,225207,ENSMUSG00000024420,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10893,cg07693105,-0.0000236,0.00000582,-4.058491311,0.0000626,loss,ns,-0.00000223,0.00000989,-0.225114132,0.822038809,neg,ns,-0.006047384,0.002896816,-2.087596783,0.037650443,neg,ns,1.424229912,0.000144815,0.0000996,1.453659672,0.147052282,pos,ns,0.913320547,Nbea,Nbea_Intron,3,55750780,55750829,55750828,55750829,50,-,TTTATCCCTGTTATTCTCGTGAAATTGCTTAATAATATGTTACAGATTCG,"Intron (Nbea-201/Nbea, intron 41 of 57)",3,55625195,56183701,558507,2,Nbea-201,432872,Nbea-201;Nbea-208,Nbea;Nbea,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,14,26422,ENSMUSG00000027799,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22900,cg22694153,-0.00000164,0.0000014,-1.171349833,0.242357717,loss,ns,0.000000535,0.00000238,0.225075731,0.822068655,pos,ns,0.00063206,0.000696825,0.907057252,0.365081046,pos,ns,0.437610714,-0.0000315,0.000024,-1.314914663,0.18951045,neg,ns,0.027504397,Lrrc41,Lrrc41_Exon,4,116075442,116075491,116075490,116075491,50,-,TGCTGGTTCTGTGAGGTAGCGGCGGCAACGACCATGGAGGCCACGTCCCG,Promoter (<=1kb),4,116075463,116083056,7594,1,Lrrc41-206,0,Lrrc41-201;Lrrc41-206;Lrrc41-202;Lrrc41-204;Lrrc41-205;Uqcrh-201;Uqcrh-204;Uqcrh-202;Uqcrh-203,Lrrc41;Lrrc41;Lrrc41;Lrrc41;Lrrc41;Uqcrh;Uqcrh;Uqcrh;Uqcrh,0;0;0;-1394;-3925;-411;-408;-371;-383,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,9,230654,ENSMUSG00000028703,conserved gene and region,4,116075337,116076722,1386,*,1386,139,0.714285714,0.81376508,0.1002886,3.09E-105,CpGisland,TRUE,U1,Pr-A
19885,cg03212517,-0.00000951,0.00000428,-2.220408682,0.027113831,loss,ns,0.00000164,0.00000728,0.224941723,0.822172813,pos,ns,0.00362474,0.002132303,1.69991785,0.090149411,pos,ns,1.045037107,0.0000456,0.0000733,0.622516416,0.534059983,pos,ns,0.912329139,Gm45837,Gm45837_Exon,7,101475376,101475425,101475424,101475425,50,-,GTGTATTCTACAGTGCACGTGTCTCCAGTGTGGCTCGGAGGCTGGAGACG,"Exon (Mir139-201/Mir139-201, exon 1 of 1)",7,101410886,101512819,101934,1,Gm45837-201,64490,Gm45837-201;Pde2a-201;Pde2a-212;Pde2a-202;Pde2a-209;Pde2a-204;Pde2a-206;Pde2a-205;Pde2a-211;Pde2a-207;Pde2a-210,Gm45837;Pde2a;Pde2a;Pde2a;Pde2a;Pde2a;Pde2a;Pde2a;Pde2a;Pde2a;Pde2a,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,6,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
15929,cg20609321,-0.00000747,0.00000824,-0.906592577,0.365326423,loss,ns,-0.00000315,0.000014,-0.224938558,0.822175273,neg,ns,-0.00438802,0.004102554,-1.069582696,0.285639289,neg,ns,0.544182057,-0.0000837,0.000141086,-0.593075813,0.553562835,neg,ns,0.708263987,Gm5452,Gm5452_Intergenic_downstream,13,83885198,83885247,83885246,83885247,50,+,TTAAAAGTTTGCCAGCCGCTCTTATCCAACTTTCCCAGCTCTCTGATTCG,Distal Intergenic,13,83832340,83833336,997,1,Gm5452-201,52858,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,16,432789,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1425,cg24147496,0.00000194,0.00000259,0.748540714,0.454701615,gain,ns,0.000000989,0.0000044,0.224596051,0.822441502,pos,ns,0.00193384,0.001289581,1.499587816,0.134738896,pos,ns,0.870507015,-0.000139372,0.0000443,-3.142650882,0.001836106,neg,ns,0.949750346,Sulf1,Sulf1_Exon,1,12805242,12805291,12805290,12805291,50,+,TGGCTTGGATTAATCAAGAATTCTCGCTTCTATAATTACACTGTTTGTCG,"Exon (Sulf1-202/Sulf1, exon 6 of 22)",1,12692277,12861192,168916,1,Sulf1-202,112965,Sulf1-202;Sulf1-203;Sulf1-205;Sulf1-208;Sulf1-201,Sulf1;Sulf1;Sulf1;Sulf1;Sulf1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,5,240725,ENSMUSG00000016918,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9145,cg01835139,0.0000217,0.00000969,2.237294891,0.025977507,gain,ns,0.00000369,0.0000165,0.224362024,0.822623421,pos,ns,0.018309615,0.004823998,3.795526975,0.000177192,pos,ns,3.751557103,-0.000547879,0.000165897,-3.302528898,0.001070202,neg,ns,0.603235874,Gm4791,Gm4791_Intron,9,47108164,47108213,47108164,47108165,50,+,CGGGGTCCAGAATGGAACTCATTACATCAAACCTGCTGGTAGCCAGCAGC,"Intron (Gm31698-201/Gm31698-201, intron 2 of 2)",9,46998741,47003860,5120,1,Gm4791-201,109423,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,18,215467,ENSMUSG00000094893,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22108,cg24214468,-0.00000138,0.00000296,-0.468006579,0.640108746,loss,ns,-0.00000113,0.00000503,-0.224173203,0.822770207,neg,ns,0.001718513,0.001472236,1.167280837,0.243994041,pos,ns,0.61262078,-0.0000186,0.0000506,-0.366545355,0.714208224,neg,ns,0.938337249,Ctr9,Ctr9_Exon,7,111050946,111050995,111050994,111050995,50,+,CAGTGTTCTGACTTACTGAGCCAGGCCCAGTACCATGTGGCCCGGGCACG,Promoter (<=1kb),7,111050993,111052370,1378,1,Ctr9-202,0,Ctr9-201;Ctr9-207;Ctr9-205;Ctr9-208;Ctr9-202;Ctr9-209,Ctr9;Ctr9;Ctr9;Ctr9;Ctr9;Ctr9,0;0;4636;4636;0;-2795,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,22083,ENSMUSG00000005609,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1444,cg08851617,0.0000225,0.00000573,3.932825685,0.000103629,gain,ns,0.00000218,0.00000973,0.224157248,0.82278261,pos,ns,-0.002493561,0.002850541,-0.874767654,0.382377556,neg,ns,0.417507606,0.000073,0.000098,0.744567566,0.457097233,pos,ns,0.766433946,Mcf2l,Mcf2l_Exon,8,12973037,12973086,12973037,12973038,50,+,CGAGATTCCGGACAAGGAGTTCCAGAATGTCATGACCTACCTCACCAGCA,"Exon (Mcf2l-201/Mcf2l, exon 4 of 30)",8,12873827,13019053,145227,1,Mcf2l-201,99210,Gm15349-201;Mcf2l-201;Mcf2l-222;Mcf2l-207;Mcf2l-219;Mcf2l-208;Mcf2l-202;Mcf2l-223;Mcf2l-212;Mcf2l-205;Mcf2l-204;Mcf2l-203,Gm15349;Mcf2l;Mcf2l;Mcf2l;Mcf2l;Mcf2l;Mcf2l;Mcf2l;Mcf2l;Mcf2l;Mcf2l;Mcf2l,-1008;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,17207,ENSMUSG00000031442,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8399,cg03273505,-0.00000278,0.000001,-2.769242064,0.00595721,loss,ns,0.000000382,0.0000017,0.224017703,0.822891095,pos,ns,0.000479638,0.000499208,0.960799051,0.337402012,pos,ns,0.471852332,-0.000029,0.0000172,-1.689941357,0.092044472,neg,ns,0.971114995,Zeb2,Zeb2_Intron,2,45092919,45092968,45092919,45092920,50,-,CGCCCTGTAGATGTGAAAAAGAAGCAATTATAATGTAGATGAATGATGAT,"Intron (Zeb2-212/Zeb2, intron 3 of 10)",2,44983632,45117395,133764,2,Zeb2-212,24427,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219;Zeb2-211,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8644,cg23329157,0.0000648,0.0000143,4.533781879,0.00000829,gain,ns,-0.00000544,0.0000243,-0.22401329,0.822894525,neg,ns,0.024607601,0.007117861,3.457162311,0.000622158,pos,ns,3.206099517,-0.000383086,0.000244783,-1.565005507,0.118601824,neg,ns,0.560604875,Btrc,Btrc_Intron,19,45476361,45476410,45476409,45476410,50,+,TCCGCATAATGTAACAATTTCCCAATAAACTCTGACTTGTAATAACGTCG,"Intron (Btrc-204/Btrc, intron 1 of 2)",19,45363734,45507736,144003,1,Btrc-204,112627,Btrc-204;Btrc-201;Btrc-210;Btrc-202;Btrc-203;Btrc-209,Btrc;Btrc;Btrc;Btrc;Btrc;Btrc,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,63,98,12234,ENSMUSG00000025217,conserved gene and region,19,45476406,45476490,85,*,85,8,0.623529412,1.011904762,0.094117647,0.00000348,CpGisland,TRUE,NA,NRS
13816,cg04862438,-0.00000476,0.00000422,-1.12780143,0.26027591,loss,ns,-0.00000161,0.00000718,-0.224010038,0.822897053,neg,ns,-0.001364144,0.00210235,-0.648866295,0.516905197,neg,ns,0.286589101,-0.0000212,0.0000723,-0.292972542,0.769739152,neg,ns,0.931226037,Zfp185,Zfp185_Exon,X,73028899,73028948,73028899,73028900,50,-,CGTGACACCATTCACTGTGGGAAATGCTATGAGAAGCTCTTCTAGGTGGG,"Exon (Zfp185-203/Zfp185, exon 18 of 19)",20,72987339,73031543,44205,1,Zfp185-203,41560,Zfp185-203;Zfp185-201,Zfp185;Zfp185,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,2,22673,ENSMUSG00000031351,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17184,cg20569804,-0.0000174,0.00000659,-2.649083252,0.008484576,loss,ns,0.00000251,0.0000112,0.223997912,0.82290648,pos,ns,-0.007205607,0.003277691,-2.198378849,0.028660915,neg,ns,1.542709955,-0.0000873,0.00011272,-0.774708644,0.439102329,neg,ns,0.817461283,Ano4,Ano4_threeUTR,10,89068179,89068228,89068227,89068228,50,-,TCATTGGCTTCTTAGGTAACCATCTCCGAAACCTGCTTATTTGTTTATCG,3' UTR,10,88948994,89257790,308797,2,Ano4-206,189562,Ano4-206;Ano4-204;Ano4-208;Ano4-210;Ano4-203;Ano4-205;Ano4-212;Ano4-202,Ano4;Ano4;Ano4;Ano4;Ano4;Ano4;Ano4;Ano4,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,8,9,320091,ENSMUSG00000035189,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6926,cg14388852,0.00000252,0.00000552,0.457447022,0.6476702,gain,ns,0.0000021,0.00000937,0.223894418,0.82298694,pos,ns,0.000445014,0.002745191,0.162106705,0.871327435,pos,ns,0.059818612,0.0000836,0.0000944,0.885776605,0.376424496,pos,ns,0.582239149,Braf,Braf_Exon,6,39615695,39615744,39615743,39615744,50,+,TTGAGGCACTCTGCCATTAATCTCTTCATGGCTTTTGGACAGTTACTCCG,"Exon (Braf-201/Braf, exon 20 of 22)",6,39603237,39725463,122227,2,Braf-201,109719,Braf-201;Braf-202,Braf;Braf,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,109880,ENSMUSG00000002413,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16187,cg21057587,0.0000664,0.00000583,11.39328868,2.36E-25,gain,yes,-0.00000222,0.00000991,-0.223881787,0.82299676,neg,ns,0.009315205,0.002901956,3.209974945,0.001466605,pos,ns,2.833686767,-0.0000252,0.0000998,-0.252049922,0.8011695,neg,ns,0.148694178,Vsx2,Vsx2_fiveUTR,12,84569738,84569787,84569738,84569739,50,+,CGCTCCTGGCCCCGGTGATTGGCTGCTCAGCTCTGACCCCACTTGGGCTG,Promoter (<=1kb),12,84569762,84595457,25696,1,Vsx2-201,0,Vsx2-201;Vsx2-202,Vsx2;Vsx2,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,20,12677,ENSMUSG00000021239,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
18579,cg03008783,-0.00000261,0.00000881,-0.296143251,0.767318973,loss,ns,-0.00000335,0.000015,-0.223750127,0.823099121,neg,ns,-0.014141674,0.004387212,-3.22338531,0.001401774,neg,ns,2.853321948,0.000350031,0.000150876,2.319994481,0.020990329,pos,ns,0.135893968,Hoxb5,Hoxb5_Exon,11,96303334,96303383,96303334,96303335,50,+,CGCATTGAATCGGCCCTAACGATTCTCGGATCGTCATTATTTGTAACCAT,Promoter (<=1kb),11,96303336,96306121,2786,1,Hoxb5-202,0,Hoxb5-202;Hoxb5-201;Hoxb6-202;Hoxb6-201,Hoxb5;Hoxb5;Hoxb6;Hoxb6,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,22,34,15413,ENSMUSG00000038700,mapped to different genes,11,96303326,96303366,41,*,41,6,0.585365854,1.72027972,0.146341463,0.00000875,CpGisland,TRUE,U3,Pr-B
4030,cg11975481,-0.0000152,0.00000905,-1.676499255,0.094648547,loss,ns,-0.00000344,0.0000154,-0.22368926,0.823146443,neg,ns,-0.019053382,0.004503563,-4.230734752,0.0000307,neg,ns,4.51275895,0.000220376,0.000154877,1.422905595,0.155769053,pos,ns,0.746169688,Gm45647,Gm45647_Intron,8,26562864,26562913,26562864,26562865,50,-,CGTGTCCTCTGCATAAATGCAATTTCCCCAAATGTCAGGAGAAAAGCATT,"Intron (Gm39149-201/Gm39149-201, intron 1 of 1)",8,26780315,26780509,195,1,Gm45647-201,-217451,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,62,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8227,cg21227186,0.0000335,0.00000398,8.40857939,1.53E-15,gain,yes,-0.00000151,0.00000676,-0.223517496,0.823279989,neg,ns,0.004603837,0.001981203,2.323757965,0.020784818,pos,ns,1.682253778,-0.0000126,0.0000681,-0.184955024,0.853385257,neg,ns,0.087818408,Gm5246,Gm5246_Intergenic_downstream,19,44882725,44882774,44882725,44882726,50,+,CGGGCTGCCTGTTCCAATATTAGATATAAACAAGTAAACTGTGTAATGGA,Distal Intergenic,19,44851009,44851979,971,1,Gm5246-201,31716,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,20,383450,NA,mapped to different genes,19,44882499,44882726,228,*,228,27,0.671052632,1.080758427,0.118421053,5.25E-23,CpGisland,TRUE,U3,Pr-B
4878,cg26208213,-0.0000042,0.0000031,-1.354342594,0.176613447,loss,ns,0.00000118,0.00000526,0.223499405,0.823294055,pos,ns,-0.001006186,0.001542183,-0.652442465,0.514599275,neg,ns,0.28853083,0.0000476,0.000053,0.897587332,0.370102159,pos,ns,0.911535841,Pbrm1,Pbrm1_threeUTR,14,31113867,31113916,31113867,31113868,50,+,CGCCAGGCCTTCCACCTTTGCAGGGCCCAGTTGATGGCCTTGTTAGCATG,3' UTR,14,31019138,31120041,100904,1,Pbrm1-208,94729,Pbrm1-208;Pbrm1-207;Pbrm1-206;Pbrm1-203;Pbrm1-217;Pbrm1-212;Pbrm1-202;Pbrm1-205;Pbrm1-210;Pbrm1-201;Pbrm1-204;Smim4-204;Smim4-202,Pbrm1;Pbrm1;Pbrm1;Pbrm1;Pbrm1;Pbrm1;Pbrm1;Pbrm1;Pbrm1;Pbrm1;Pbrm1;Smim4;Smim4,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,5,66923,ENSMUSG00000042323,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19840,cg23729738,0.000022,0.00000784,2.806444192,0.005326152,gain,ns,0.00000298,0.0000133,0.223429765,0.823348202,pos,ns,-0.003478887,0.003903403,-0.89124465,0.373489144,neg,ns,0.427722018,0.0000863,0.000134238,0.642542451,0.520995952,pos,ns,0.754557873,Nlgn3,Nlgn3_Intron,X,101302471,101302520,101302471,101302472,50,+,CGCCTGCCCTGCTGTGTTTGTGGCTTGCATGTGGTTGTGTGCCCTGCAGC,"Intron (Gm21986-201/Gm21986-201, intron 5 of 10)",20,101299168,101325963,26796,1,Nlgn3-202,3303,Nlgn3-202;Nlgn3-203;Nlgn3-206;Nlgn3-201;Nlgn3-205,Nlgn3;Nlgn3;Nlgn3;Nlgn3;Nlgn3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,16,245537,ENSMUSG00000031302,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5006,cg25572043,-0.0000774,0.000012,-6.473648867,3.74E-10,loss,yes,0.00000454,0.0000203,0.223364078,0.823399275,pos,ns,-0.007776202,0.005952116,-1.306460093,0.192364586,neg,ns,0.715874879,-0.0000528,0.000204693,-0.257863723,0.79668318,neg,ns,0.846374381,Ankrd28,Ankrd28_fiveUTR,14,31781852,31781901,31781852,31781853,50,+,CGCTTTTAACATTTTCCACTAAAAGCCACAAGGAAATCTGGTGTACTGCC,5' UTR,14,31698768,31830651,131884,2,Ankrd28-201,48750,Ankrd28-207;Ankrd28-201;Ankrd28-204;Ankrd28-210;Ankrd28-209,Ankrd28;Ankrd28;Ankrd28;Ankrd28;Ankrd28,0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,5,105522,ENSMUSG00000014496,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6946,cg05453278,-0.00000331,0.00000155,-2.129628429,0.03398986,loss,ns,0.000000589,0.00000264,0.22330572,0.823444652,pos,ns,-0.000757015,0.000773269,-0.978980947,0.328352763,neg,ns,0.483659325,0.0000508,0.0000266,1.910899049,0.056939746,pos,ns,0.960986354,Map4k4,Map4k4_Exon,1,39999936,39999985,39999984,39999985,50,+,CTTCAGCAGCAGCTGCTCCAGGAGCAGGCCATGTTACTGGTAAAGCCCCG,"Exon (Map4k4-201/Map4k4, exon 14 of 31)",1,39900913,40026310,125398,1,Map4k4-201,99023,Map4k4-201;Map4k4-202;Map4k4-213;Map4k4-218;Map4k4-215;Map4k4-217;Map4k4-209;Map4k4-216;Map4k4-208;Map4k4-206;Map4k4-205,Map4k4;Map4k4;Map4k4;Map4k4;Map4k4;Map4k4;Map4k4;Map4k4;Map4k4;Map4k4;Map4k4,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,12,26921,ENSMUSG00000026074,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9434,cg07267717,-0.0000146,0.0000148,-0.984398443,0.32568731,loss,ns,-0.00000562,0.0000252,-0.223233344,0.823500928,neg,ns,0.012399528,0.007380222,1.680102141,0.093944825,pos,ns,1.02712714,-0.000740922,0.000253805,-2.919255857,0.003765646,neg,ns,0.148235941,Zbtb16,Zbtb16_Intron,9,48737574,48737623,48737622,48737623,50,-,GTCAAGCCTGCATTAATTTCTGCTTTGGGTACAGTGTGTTCTTGGAGGCG,"Intron (Zbtb16-201/Zbtb16, intron 3 of 6)",9,48654297,48835945,181649,2,Zbtb16-201,98322,Zbtb16-201;Zbtb16-202,Zbtb16;Zbtb16,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,37,235320,ENSMUSG00000066687,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
15093,cg00228489,-0.00000271,0.00000206,-1.31733111,0.188700486,loss,ns,0.000000781,0.0000035,0.223150113,0.823565646,pos,ns,0.000716101,0.001025664,0.698183055,0.485586102,pos,ns,0.313733752,-0.0000556,0.0000353,-1.577472746,0.115706656,neg,ns,0.969213388,Zfp827,Zfp827_Exon,8,79076423,79076472,79076423,79076424,50,-,CGCCAACCACACAAAGCTGAAAGACCCCTCCGAGTATGTGGCCAACAGTG,"Exon (Zfp827-202/Zfp827, exon 4 of 15)",8,79028437,79193743,165307,1,Zfp827-202,47986,Zfp827-201;Zfp827-202;Zfp827-203;Zfp827-209,Zfp827;Zfp827;Zfp827;Zfp827,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,28,622675,ENSMUSG00000071064,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11860,cg19097042,-0.00000278,0.00000235,-1.18554496,0.236710003,loss,ns,0.000000889,0.00000399,0.223011148,0.823673703,pos,ns,0.001239709,0.001167582,1.061774708,0.289164441,pos,ns,0.538855114,-0.0000363,0.0000402,-0.905250588,0.366035656,neg,ns,0.935319167,Ppargc1b,Ppargc1b_threeUTR,18,61298617,61298666,61298665,61298666,50,-,AACGTAAACATATTGGAAGGGCCTTGTCTGAGGTATTGAGGTATTCCTCG,3' UTR,18,61298136,61400431,102296,2,Ppargc1b-202,101765,Ppargc1b-202;Ppargc1b-201,Ppargc1b;Ppargc1b,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,2,170826,ENSMUSG00000033871,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27328,cg11802297,0.00000922,0.00000819,1.125519467,0.261239595,gain,ns,0.0000031,0.0000139,0.22298367,0.82369507,pos,ns,0.005889266,0.004075356,1.445092473,0.14944198,pos,ns,0.825527388,-0.000228184,0.000140151,-1.628124986,0.104514229,neg,ns,0.833800954,Slc12a5,Slc12a5_Exon,2,164980178,164980227,164980178,164980179,50,-,CGCTGTCTCGCCATGGCTTTGATGTCTGTGCCAAGCTGGCTTGGGAAGGA,"Exon (Slc12a5-209/Slc12a5, exon 8 of 26)",2,164960824,164997569,36746,1,Slc12a5-209,19354,Slc12a5-209;Slc12a5-207;Slc12a5-201;Slc12a5-208;Slc12a5-206;Slc12a5-204,Slc12a5;Slc12a5;Slc12a5;Slc12a5;Slc12a5;Slc12a5,0;0;0;0;0;-2210,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,9,57138,ENSMUSG00000017740,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11593,cg01213047,0.000000053,0.00000146,0.036204128,0.971142896,gain,ns,0.000000555,0.00000249,0.222934225,0.823733519,pos,ns,0.000886996,0.000729097,1.216566788,0.224694528,pos,ns,0.648407503,-0.0000339,0.0000251,-1.352099275,0.177329146,neg,ns,0.964675617,P4ha1,P4ha1_Exon,10,59350567,59350616,59350567,59350568,50,+,CGAAATGCTGTGCCGTGGGGAGGGTATCAAAATGGTAAAGTGGAAAAGCC,"Exon (P4ha1-201/P4ha1, exon 7 of 15)",10,59323296,59373304,50009,1,P4ha1-201,27271,P4ha1-201;P4ha1-202;P4ha1-203,P4ha1;P4ha1;P4ha1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,18451,ENSMUSG00000019916,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1730,cg10932638,0.000017,0.00000367,4.636771688,0.00000522,gain,ns,0.00000139,0.00000623,0.22274644,0.823879546,pos,ns,0.003905544,0.001824299,2.140846208,0.033066188,pos,ns,1.480615875,-0.0000355,0.0000627,-0.565144283,0.572384387,neg,ns,0.066404307,Gm5513,Gm5513_Intergenic_downstream,19,14890895,14890944,14890943,14890944,50,-,AAGCCGCATAATGGTGTTCAATGAAGTGTGAGACTTTTAGTTCAGTCTCG,Distal Intergenic,19,14959549,14960766,1218,2,Gm5513-201,69871,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,22,433225,NA,mapped to different genes,19,14890943,14890964,22,*,22,5,0.863636364,1.25,0.227272727,0.00000782,CpGisland,TRUE,U13,Hc-P
17426,cg24065099,7.90E-09,0.00000618,0.001278628,0.998980625,gain,ns,-0.00000234,0.0000105,-0.222737567,0.823886446,neg,ns,0.005782849,0.003076692,1.879567061,0.061104917,pos,ns,1.213923842,-0.000333656,0.000105807,-3.153429784,0.001771679,neg,ns,0.875028283,Scaf4,Scaf4_Exon,16,90242626,90242675,90242626,90242627,50,-,CGGCGTTTCCTCTAGCCCCAGACACCACTGTTGGAATGGGATTTCCAATA,"Exon (Scaf4-202/Scaf4, exon 19 of 20)",16,90228951,90284308,55358,2,Scaf4-202,41633,Scaf4-202;Scaf4-208;Scaf4-201;Scaf4-205;Scaf4-203,Scaf4;Scaf4;Scaf4;Scaf4;Scaf4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,224432,ENSMUSG00000022983,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8498,cg04671066,0.0000537,0.00000603,8.89698305,4.88E-17,gain,yes,0.00000228,0.0000102,0.22242403,0.824130276,pos,ns,0.005963508,0.003001611,1.98676912,0.047828041,pos,ns,1.320317404,-0.0000791,0.000103225,-0.766405902,0.444018032,neg,ns,0.130737023,Lbx1,Lbx1_Intergenic_downstream,19,45231293,45231342,45231293,45231294,50,+,CGCGGGGACCTAATCCATCAAATTGTCTACAAATTGTGAAGAAAATTCAA,Downstream (1-2kb),19,45232684,45235812,3129,2,Lbx1-201,4470,Lbx1-201,Lbx1,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,30,50,16814,ENSMUSG00000025216,mapped to different genes,19,45230944,45231296,353,*,353,46,0.776203966,0.880346978,0.130311615,4.39E-41,CpGisland,TRUE,NA,NRS
2043,cg15076225,0.0000147,0.00000588,2.507236336,0.012679166,gain,ns,-0.00000222,0.00000998,-0.222388202,0.82415814,neg,ns,0.000628952,0.002924911,0.215032881,0.829883077,pos,ns,0.080983091,-0.000125167,0.000100587,-1.244360068,0.214307065,neg,ns,0.919086284,Gm12016,Gm12016_Intergenic_upstream,11,17678727,17678776,17678775,17678776,50,-,CCCAGTTTTGAAATCAATTTGTAAAAATCGGCTTATAAAACAATTTTCCG,Distal Intergenic,11,17638503,17639183,681,2,Gm12016-201,-39593,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,4,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8942,cg19152246,-0.0000102,0.00000524,-1.945471613,0.05262195,loss,ns,0.00000198,0.00000889,0.222348739,0.82418883,pos,ns,-0.005018686,0.002605868,-1.925917464,0.055028997,neg,ns,1.259408405,0.000153513,0.0000896,1.713011284,0.087710291,pos,ns,0.818687481,Mfsd13a,Mfsd13a_Exon,19,46367829,46367878,46367877,46367878,50,-,CCTGCAGTTCTTGCTGTGCCTGTGCCTCTATGATGGCTTCCTGACGCTCG,"Exon (Mfsd13a-202/Mfsd13a, exon 4 of 9)",19,46341121,46375252,34132,1,Mfsd13a-202,26708,Mfsd13a-202;Mfsd13a-201;Mfsd13a-205;Mfsd13a-203;Mfsd13a-204,Mfsd13a;Mfsd13a;Mfsd13a;Mfsd13a;Mfsd13a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,75146,ENSMUSG00000025227,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25698,cg11902726,0.000028,0.0000161,1.74103963,0.082668732,gain,ns,0.00000607,0.0000273,0.222327603,0.824205268,pos,ns,0.010804127,0.007993999,1.351529722,0.177511198,pos,ns,0.750774244,-0.000503654,0.000274913,-1.832049734,0.067903287,neg,ns,0.485156651,Lmo3,Lmo3_Exon,6,138427406,138427455,138427406,138427407,50,-,CGGTGAGAAGAAAAAAATTACACAGCACACCTGGGACAGATGAAGCCAAA,"Exon (A830011K09Rik-201/A830011K09Rik-201, exon 3 of 4)",6,138362918,138581968,219051,2,Lmo3-204,154513,Lmo3-204;Lmo3-201;Lmo3-206;Lmo3-202;Lmo3-208;Lmo3-203;Lmo3-205,Lmo3;Lmo3;Lmo3;Lmo3;Lmo3;Lmo3;Lmo3,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,38,109593,ENSMUSG00000030226,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25217,cg23801792,-0.000000935,0.00000127,-0.738388553,0.460836997,loss,ns,0.000000478,0.00000215,0.222283239,0.824239772,pos,ns,0.000180225,0.000630155,0.286000795,0.775068534,pos,ns,0.110659894,0.00000871,0.0000217,0.401833268,0.688083628,pos,ns,0.033148707,Arid1a,Arid1a_fiveUTR,4,133756761,133756810,133756809,133756810,50,-,GGCCAACAGCCTGATGGCAAATATGGACTGAATCGTTGACATGGAAACCG,Promoter (<=1kb),4,133679941,133756769,76829,2,Arid1a-201,0,Arid1a-202;Arid1a-205;Arid1a-201;Arid1a-203,Arid1a;Arid1a;Arid1a;Arid1a,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,31,93760,ENSMUSG00000007880,mapped to different genes,4,133756709,133756989,281,*,281,24,0.629893238,0.867283951,0.085409253,6.62E-17,CpGisland,TRUE,U1,Pr-A
14579,cg06103302,0.00000686,0.00000357,1.922944476,0.055402918,gain,ns,0.00000135,0.00000606,0.221947525,0.824500875,pos,ns,-0.001999713,0.001775928,-1.126010463,0.261032036,neg,ns,0.58330619,0.00000789,0.0000611,0.129221693,0.897266031,pos,ns,0.890723185,Sptb,Sptb_Exon,12,76621262,76621311,76621262,76621263,50,-,CGGAGCTCATCCTCAAAGGCCTTGTGCTTGCGCTGTAAGATGAGCACACT,"Exon (Sptb-201/Sptb, exon 14 of 36)",12,76580488,76710547,130060,2,Sptb-201,89236,Sptb-201;Sptb-202,Sptb;Sptb,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,6,20741,ENSMUSG00000021061,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2874,cg26260350,0.0000618,0.00000412,15.00693726,1.21E-38,gain,yes,-0.00000155,0.00000699,-0.221902212,0.824536118,neg,ns,0.003045361,0.002048357,1.486733713,0.1381015,pos,ns,0.859801605,0.0000718,0.0000704,1.019329306,0.308841494,pos,ns,0.053675004,Otx1,Otx1_fiveUTR,11,22001599,22001648,22001647,22001648,50,-,CCTGATGAAGATTGATCACCTTTCTACTGCCCTCCCCGGGTATGTGAACG,Promoter (<=1kb),11,21994764,22001615,6852,2,Otx1-201,0,Ehbp1-201;Ehbp1-202;Ehbp1-207;Otx1-201;Otx1-203;Otx1-202,Ehbp1;Ehbp1;Ehbp1;Otx1;Otx1;Otx1,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,13,18423,ENSMUSG00000005917,conserved gene but different region,11,22001635,22002065,431,*,431,50,0.728538283,0.874416717,0.116009281,9.57E-42,CpGisland,TRUE,U3,Pr-B
9722,cg03597059,-0.00000751,0.00000368,-2.038019379,0.042396576,loss,ns,0.00000139,0.00000626,0.221809284,0.824608398,pos,ns,0.001936841,0.001833778,1.05620283,0.291697967,pos,ns,0.535066598,-0.000186485,0.0000631,-2.957098096,0.003344133,neg,ns,0.924930781,Prkd1,Prkd1_Intergenic_downstream,12,50295286,50295335,50295286,50295287,50,-,CGATTAGGTTTATAATGGTTGTAATTTAACAAAACTGTTGTATGAAATAT,Distal Intergenic,12,50341231,50649098,307868,2,Prkd1-201,353812,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,8,18760,ENSMUSG00000002688,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6399,cg09816912,0.0000032,0.00000109,2.932599745,0.003611768,gain,ns,0.000000411,0.00000185,0.221789155,0.824624055,pos,ns,0.000698396,0.000542948,1.286304448,0.199296673,pos,ns,0.700499951,-0.0000132,0.0000187,-0.708078379,0.47942863,neg,ns,0.03279868,Marcks,Marcks_fiveUTR,10,37138894,37138943,37138942,37138943,50,-,GCTAATAAGATGCGGGGTCCAACGCCCAAGTGCACAGATGAATGGGCTCG,Promoter (<=1kb),10,37133375,37138920,5546,2,Marcks-201,0,Marcks-201,Marcks,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,8,17118,ENSMUSG00000069662,conserved gene but different region,10,37138906,37139051,146,*,146,22,0.726027397,1.143874644,0.150684932,1.99E-21,CpGisland,TRUE,NA,NRS
21037,cg01428630,-0.0000127,0.00000592,-2.141729305,0.032994399,loss,ns,0.00000223,0.0000101,0.221784421,0.824627736,pos,ns,-0.0000921,0.002946229,-0.031266134,0.975077418,neg,ns,0.010960901,0.0000355,0.000101321,0.350113212,0.726491492,pos,ns,0.908757135,Dcdc5,Dcdc5_Intron,2,106133698,106133747,106133698,106133699,50,-,CGAAATTACGCATTGACTCCCCGTTTGATTTCTCCCAGTGTTTAGTGCTA,"Intron (Dcdc5-203/Dcdc5, intron 8 of 8)",2,106003336,106157718,154383,1,Dcdc5-203,130362,Dcdc5-203;Dcdc5-202,Dcdc5;Dcdc5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,22,329482,ENSMUSG00000074981,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19572,cg12030043,0.0000706,0.00000781,9.041322713,1.72E-17,gain,yes,0.00000294,0.0000133,0.221663712,0.824721627,pos,ns,0.009649266,0.003886227,2.482939126,0.013559071,pos,ns,1.867770067,-0.0000737,0.000133647,-0.551404559,0.581753596,neg,ns,0.25127702,Sox14,Sox14_Exon,9,99874976,99875025,99874976,99874977,50,+,CGTGGGCTGACGAATAAGGGTCTATGCCAGTCTTGGTCATGCCTGGGAAG,"Exon (Sox14-201/Sox14, exon 1 of 1)",9,99874106,99876170,2065,2,Sox14-201,1145,Sox14-201;Sox14-202,Sox14;Sox14,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,18,20669,ENSMUSG00000053747,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
8782,cg18055433,0.000120483,0.00000852,14.13504948,2.35E-35,gain,yes,-0.00000321,0.0000145,-0.221617068,0.824757908,neg,ns,0.014258689,0.004242326,3.361054801,0.000873628,pos,ns,3.058673471,-0.0000422,0.000145893,-0.289033656,0.772748812,neg,ns,0.355552936,Fgf8,Fgf8_fiveUTR,19,45741606,45741655,45741606,45741607,50,+,CGGCTGAGCTGATCCGTCACCAGGCTCTGCTCCCTCACATGCTGTGTAAA,5' UTR,19,45736798,45742874,6077,2,Fgf8-201,1219,Fgf8-201;Fgf8-206;Fgf8-202;Fgf8-205;Fgf8-203;Fgf8-204,Fgf8;Fgf8;Fgf8;Fgf8;Fgf8;Fgf8,0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,6,18,14179,ENSMUSG00000025219,conserved gene and region,19,45741448,45741621,174,*,174,14,0.643678161,0.780769231,0.08045977,1.09E-09,CpGisland,TRUE,U13,Hc-P
4489,cg12462816,0.0000813,0.00000694,11.70931322,1.81E-26,gain,yes,0.00000261,0.0000118,0.221573963,0.824791438,pos,ns,0.010876737,0.0034561,3.147112458,0.001809181,pos,ns,2.742517997,-0.000066,0.000118855,-0.554888651,0.579370964,neg,ns,0.163789186,Soga3,Soga3_Exon,10,29148269,29148318,29148269,29148270,50,+,CGCCACGAGTTGGAGAGAGCCAACAAAAACTGCCGGATCCTGCAGTACCG,"Exon (Soga3-201/Soga3, exon 3 of 7)",10,29143839,29199630,55792,1,Soga3-201,4430,Soga3-201;Soga3-205;Soga3-202;Soga3-203;Soga3-204,Soga3;Soga3;Soga3;Soga3;Soga3,0;4210;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,67412,ENSMUSG00000038916,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
17915,cg08869330,0.0000052,0.00000353,1.471572005,0.142150888,gain,ns,-0.00000133,0.000006,-0.221529777,0.824825808,neg,ns,-0.001850403,0.001757212,-1.053033136,0.293145893,neg,ns,0.532916186,0.00011642,0.0000604,1.926514302,0.054954186,pos,ns,0.925506536,Irx5,Irx5_Intergenic_downstream,8,92449760,92449809,92449808,92449809,50,+,TTTAAACCAATATGATCTCAATTCTTTTGTGGGCTTTGAAAGTCCGTGCG,Distal Intergenic,8,92357749,92361456,3708,1,Irx5-201,92011,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,11,30,54352,ENSMUSG00000031737,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4872,cg22177193,0.00000115,0.00000246,0.468918947,0.639457164,gain,ns,-0.000000927,0.00000418,-0.221514982,0.824837316,neg,ns,-0.001112891,0.001225667,-0.90798844,0.364589634,neg,ns,0.438195683,-0.0000154,0.0000422,-0.364615695,0.715646896,neg,ns,0.955558203,Acap2,Acap2_Exon,16,31107533,31107582,31107533,31107534,50,-,CGCAGTTTTGAAGAAGTATCAAAGTAGGAGAAGAGTGAATCTAGCTCATC,"Exon (Acap2-202/Acap2, exon 18 of 24)",16,31092412,31201245,108834,2,Acap2-204,93663,Acap2-204;Acap2-201;Acap2-203;Acap2-202;Acap2-206;Acap2-207,Acap2;Acap2;Acap2;Acap2;Acap2;Acap2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,4,78618,ENSMUSG00000049076,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7304,cg07399477,-0.0000333,0.00000612,-5.451034608,0.000000102,loss,yes,0.0000023,0.0000104,0.221305393,0.825000351,pos,ns,-0.006387259,0.003043873,-2.098398652,0.036678897,neg,ns,1.435583734,0.000113177,0.000104679,1.08118987,0.280453029,pos,ns,0.808170737,Gm8176,Gm8176_Intergenic_upstream,1,42242833,42242882,42242881,42242882,50,+,GGCCCTGGCTGCCTGTGCCCATAAATTTGCCTATGCAATGCCTGTTTACG,Distal Intergenic,1,42179290,42180388,1099,2,Gm8176-201,-62445,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,13,17,666582,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27183,cg09038439,0.0000265,0.00000623,4.245422891,0.0000289,gain,ns,0.00000234,0.0000106,0.221277438,0.825022097,pos,ns,0.0065773,0.003102348,2.120103978,0.034791418,pos,ns,1.458527875,-0.00020995,0.000106689,-1.967855658,0.049975736,neg,ns,0.072481987,Mafb,Mafb_Exon,2,160365809,160365858,160365809,160365810,50,-,CGCGGGCCAGCCGGGACACCTCCTGCTTAAGCTGCTCCACCTGCTGAATG,"Exon (Mafb-201/Mafb, exon 1 of 1)",2,160363703,160367065,3363,2,Mafb-201,1207,Mafb-201,Mafb,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,14,22,16658,ENSMUSG00000074622,conserved gene and region,2,160365737,160365821,85,*,85,9,0.670588235,0.942118227,0.105882353,0.000000223,CpGisland,TRUE,U3,Pr-B
2736,cg27256262,0.0000396,0.00000416,9.522960698,5.01E-19,gain,yes,-0.00000156,0.00000707,-0.221192236,0.825088376,neg,ns,0.007523479,0.002070908,3.6329381,0.000327836,pos,ns,3.484342819,-0.000132292,0.0000712,-1.857560524,0.064179546,neg,ns,0.08594124,Klhl14,Klhl14_Exon,18,21651786,21651835,21651786,21651787,50,+,CGATCTTGCACACCTGCTTGTAGTTCTGCACCGAGATCTGGTCGTTGAGG,Promoter (<=1kb),18,21550377,21652368,101992,2,Klhl14-201,533,Klhl14-201;Klhl14-202,Klhl14;Klhl14,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,38,225266,ENSMUSG00000042514,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
13580,cg24721437,-0.00000216,0.00000123,-1.760595693,0.079292881,loss,ns,-0.000000461,0.00000209,-0.221009322,0.825230671,neg,ns,0.0000717,0.000611669,0.11716037,0.906808839,pos,ns,0.042484255,-0.00000895,0.000021,-0.425590386,0.670701652,neg,ns,0.959836067,Hat1,Hat1_Exon,2,71421240,71421289,71421240,71421241,50,+,CGCTCTTTGCGACCGTAGGCTACATGACAGTCTATAATTACTATGTGTAC,"Exon (Hat1-202/Hat1, exon 7 of 11)",2,71388958,71441622,52665,1,Hat1-202,32282,Hat1-202;Hat1-201;Hat1-204,Hat1;Hat1;Hat1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,11,12,107435,ENSMUSG00000027018,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10962,cg18198034,-0.00000266,0.00000155,-1.715820847,0.087193943,loss,ns,-0.000000583,0.00000264,-0.220967225,0.82526342,neg,ns,-0.001468101,0.000772361,-1.900796073,0.058256077,neg,ns,1.234658761,0.0000507,0.0000266,1.908956177,0.057190936,pos,ns,0.985194857,Tcf7l2,Tcf7l2_Exon,19,55926000,55926049,55926000,55926001,50,+,CGAGCGCGCTTTGGCCTTGATCAACAGAATAACTGGTGCGGCCCTTGCAG,"Exon (Tcf7l2-213/Tcf7l2, exon 12 of 14)",19,55741820,55933229,191410,1,Tcf7l2-213,184180,Tcf7l2-213;Tcf7l2-201;Tcf7l2-208;Tcf7l2-211;Tcf7l2-212;Tcf7l2-222;Tcf7l2-215;Tcf7l2-207;Tcf7l2-202;Tcf7l2-209;Tcf7l2-210;Tcf7l2-203,Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,88,21416,ENSMUSG00000024985,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13729,cg22407807,0.00000193,0.00000615,0.313334486,0.754237265,gain,ns,-0.00000231,0.0000104,-0.220943989,0.825281496,neg,ns,0.00000861,0.003060029,0.002814356,0.997756282,pos,ns,0.000975529,-0.0000218,0.000105234,-0.207375143,0.835853051,neg,ns,0.558815165,Gm49290,Gm49290_Intergenic_upstream,14,72295279,72295328,72295327,72295328,50,+,CCAACACAACTAATAAAAATGCACTTTATCTTCTTGGATTTATGGGATCG,Distal Intergenic,14,72195317,72195696,380,2,Gm49290-201,-99583,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18194,cg19096389,0.0000186,0.00000724,2.573973694,0.010518001,gain,ns,-0.00000272,0.0000123,-0.220887414,0.82532551,neg,ns,-0.001519001,0.003603095,-0.421582159,0.67362221,neg,ns,0.171583602,-0.0000694,0.00012391,-0.559688335,0.576096207,neg,ns,0.849383595,Cacna1g,Cacna1g_Exon,11,94430138,94430187,94430186,94430187,50,-,TGCCCAGGATCTTGGTGCCGCTGTCAGAGACCATGGACACCAGAATGTCG,"Exon (Cacna1g-202/Cacna1g, exon 21 of 36)",11,94408391,94474100,65710,2,Cacna1g-202,43913,Cacna1g-202;Cacna1g-203;Cacna1g-205;Cacna1g-206;Cacna1g-207;Cacna1g-208;Cacna1g-209;Cacna1g-210;Cacna1g-211;Cacna1g-201;Cacna1g-204;Cacna1g-212;Cacna1g-216,Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g,0;0;0;0;0;0;0;0;0;0;0;-3676;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,14,18,12291,ENSMUSG00000020866,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27599,cg21527341,-0.0000446,0.00000933,-4.781438326,0.00000269,loss,ns,-0.0000035,0.0000158,-0.220876968,0.825333636,neg,ns,-0.004426426,0.004642151,-0.95352914,0.341064946,neg,ns,0.467162914,-0.000156477,0.000159643,-0.980169627,0.327766708,neg,ns,0.875162465,Usp21,Usp21_Exon,1,171284695,171284744,171284695,171284696,50,-,CGCTCCATGAGGAGCTTCAGGAACTCTTGGGCATCCTGCTGGCTACAGCC,"Exon (Usp21-201/Usp21, exon 6 of 13)",1,171281945,171287991,6047,2,Usp21-201,3247,Ppox-207;Ppox-201;Ppox-206;Ppox-208;Ppox-202;Ppox-204;Ppox-205;Ppox-203;Ufc1-201;Ufc1-203;Ufc1-204;Ufc1-202;Ufc1-205;Usp21-201;Usp21-202;Usp21-208;Usp21-210;Usp21-203;Usp21-207;Usp21-205;Usp21-204;Usp21-209;Usp21-206;Usp21-211;Usp21-212,Ppox;Ppox;Ppox;Ppox;Ppox;Ppox;Ppox;Ppox;Ufc1;Ufc1;Ufc1;Ufc1;Ufc1;Usp21;Usp21;Usp21;Usp21;Usp21;Usp21;Usp21;Usp21;Usp21;Usp21;Usp21;Usp21,-3509;-3509;-3509;-3935;-4868;-4173;-3509;-3576;10280;5696;10197;10243;10196;0;0;-1789;0;0;-1528;0;0;0;0;0;2062,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,30941,ENSMUSG00000053483,conserved gene and region,1,171284614,171284696,83,*,83,8,0.662650602,0.902173913,0.096385542,0.00000291,CpGisland,TRUE,NA,NRS
6179,cg17309014,0.00000093,0.00000228,0.407377249,0.684012098,gain,ns,0.000000856,0.00000388,0.220799756,0.825393706,pos,ns,0.002033197,0.001135997,1.789791003,0.074463453,pos,ns,1.128056829,-0.000055,0.0000391,-1.40728071,0.160346006,neg,ns,0.951516974,Trim39,Trim39_threeUTR,17,36260375,36260424,36260423,36260424,50,-,CACTCCCAATCTGTTGGGGGCCTGATGGTAAGTGGTGCAGCATTCTTCCG,3' UTR,17,36258873,36268752,9880,2,Trim39-206,8328,Rpp21-202;Rpp21-205;Rpp21-201;Rpp21-204;Rpp21-203;Rpp21-206;Trim39-206;Trim39-203;Trim39-201;Trim39-205;Trim39-207;Trim39-202;Trim39-204,Rpp21;Rpp21;Rpp21;Rpp21;Rpp21;Rpp21;Trim39;Trim39;Trim39;Trim39;Trim39;Trim39;Trim39,-2519;-2532;-2306;-4025;-2765;-2520;0;0;0;0;0;10959;11823,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,2,79263,ENSMUSG00000045409,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16309,cg26576573,-0.0000176,0.00000295,-5.98364148,6.02E-09,loss,yes,-0.0000011,0.000005,-0.220642406,0.825516123,neg,ns,-0.001176246,0.001465958,-0.802373531,0.422951599,neg,ns,0.373709329,-0.0000345,0.0000504,-0.684649054,0.49407695,neg,ns,0.930424188,Nfix,Nfix_Exon,8,84727927,84727976,84727927,84727928,50,-,CGCATCTCCTTGCTGGTTTGAACTATCTGATTGTCCGGATTCTGCAGGAG,"Exon (Nfix-204/Nfix, exon 3 of 11)",8,84704712,84773396,68685,2,Nfix-204,45420,G430095P16Rik-201;Nfix-204;Nfix-201;Nfix-202;Nfix-203;Nfix-205,G430095P16Rik;Nfix;Nfix;Nfix;Nfix;Nfix,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,20,49,18032,ENSMUSG00000001911,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4623,cg26775450,-0.00000072,0.00000174,-0.413511915,0.679517503,loss,ns,0.000000652,0.00000296,0.220501525,0.825625732,pos,ns,-0.0000671,0.000866707,-0.07741242,0.938345401,neg,ns,0.02763727,0.0000502,0.0000298,1.684372285,0.093116238,pos,ns,0.94866696,Mecom,Mecom_threeUTR,3,29980864,29980913,29980912,29980913,50,+,TCTTTGCACTTGATTTGGGTTCTGCAATCAGCATGCATGCGCTTATGACG,3' UTR,3,29951296,30013156,61861,2,Mecom-206,32243,Mecom-206;Mecom-212;Mecom-202;Mecom-203;Mecom-210;Mecom-215;Mecom-204;Mecom-213;Mecom-207;Mecom-208;Mecom-205;Mecom-216,Mecom;Mecom;Mecom;Mecom;Mecom;Mecom;Mecom;Mecom;Mecom;Mecom;Mecom;Mecom,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,10,80,14013,ENSMUSG00000027684,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4122,cg05222658,-0.0000488,0.0000096,-5.081910193,0.000000647,loss,yes,0.00000359,0.0000163,0.220430014,0.82568137,pos,ns,-0.013014295,0.00477671,-2.724531196,0.006804772,neg,ns,2.167186431,0.000494779,0.000164271,3.011976671,0.002809212,pos,ns,0.764846167,Zfp703,Zfp703_Intergenic_upstream,8,26914416,26914465,26914464,26914465,50,-,CATCCATCATCAAGACAATAAAGAAAACCGCACTTACTTTTTTCCTGTCG,Distal Intergenic,8,26977325,26978733,1409,1,Zfp703-201,-62909,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,11,353310,ENSMUSG00000085795,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4214,cg16629624,-0.0000127,0.00000831,-1.523081595,0.128757719,loss,ns,-0.00000311,0.0000141,-0.220415094,0.825692979,neg,ns,0.008088919,0.004136862,1.95532726,0.051442667,pos,ns,1.288676524,-0.000452849,0.000142266,-3.183107787,0.001604924,neg,ns,0.491202823,Ttc9b,Ttc9b_Exon,7,27655910,27655959,27655958,27655959,50,+,GACACCAATGTGCTCCGCTACATCCAGCTGACTCAGCTGAAGATGAATCG,"Exon (Ttc9b-201/Ttc9b, exon 3 of 3)",7,27653915,27657346,3432,1,Ttc9b-201,1995,Map3k10-201;Map3k10-202;Ttc9b-201,Map3k10;Map3k10;Ttc9b,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,73032,ENSMUSG00000007944,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
10136,cg08143349,0.0000847,0.0000119,7.121799238,7.47E-12,gain,yes,-0.00000445,0.0000202,-0.220342708,0.825749299,neg,ns,0.020051101,0.005917843,3.38824509,0.000794248,pos,ns,3.100043867,-0.000429967,0.000203514,-2.112715678,0.035424323,neg,ns,0.437410278,Gm28308,Gm28308_threeUTR,6,52201947,52201996,52201995,52201996,50,+,CTTATAAGAGCCACTTCCAGAGTTCGTGCAAAGGGTCCTATAAAGGCACG,3' UTR,6,52163359,52213339,49981,2,Gm28308-201,11343,Gm28308-201;Hoxa3-201;Hoxa3-203;Hoxa5-201;Hoxa6-201,Gm28308;Hoxa3;Hoxa3;Hoxa5;Hoxa6,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,103,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
25525,cg22535670,-0.0000112,0.00000495,-2.255575432,0.024794212,loss,ns,0.00000185,0.00000841,0.220231992,0.825835444,pos,ns,-0.0000473,0.002462515,-0.019221747,0.984676575,neg,ns,0.006706394,-0.000131524,0.0000847,-1.553079123,0.121424518,neg,ns,0.903835093,Gm45499,Gm45499_Intergenic_upstream,7,137147535,137147584,137147583,137147584,50,+,CGCTATGCAATAATGGGTCAAAAATTCATTCAAGTTTTACTGCTGTTCCG,Distal Intergenic,7,137167820,137168099,280,1,Gm45499-201,-20236,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,4,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26490,cg03009890,0.00000167,0.0000115,0.146117171,0.88392386,gain,ns,-0.00000428,0.0000195,-0.22011188,0.825928902,neg,ns,0.033784271,0.005699873,5.927197316,8.20E-09,pos,ns,8.086051599,-0.001306441,0.000196018,-6.664898923,1.21E-10,neg,yes,0.151126655,Casz1,Casz1_Promoter,4,148795013,148795062,148795061,148795062,50,+,GCATTTTTAATCACCAATCATTTCTCTTTGTTTGTTGTGAATGAACAGCG,Promoter (9-10kb),4,148804429,148945129,140701,1,Casz1-201,-9367,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24022,cg07347114,0.00000058,0.0000039,0.148802256,0.881806421,gain,ns,-0.00000146,0.00000662,-0.21998784,0.826025419,neg,ns,-0.003062745,0.001940082,-1.578667978,0.115432055,neg,ns,0.937673571,0.0000835,0.0000667,1.252238617,0.211426845,pos,ns,0.935789184,Gask1a,Gask1a_Exon,9,121976366,121976415,121976366,121976367,50,+,CGCTACTGCTGTGGCTTCGAGCCTGAGCCCTCAGACCCCTGTGTGGAAGA,"Exon (Gask1a-201/Gask1a, exon 3 of 5)",9,121950988,121980209,29222,1,Gask1a-201,25378,Gask1a-201;Gask1a-203;Gask1a-204;Gask1a-202,Gask1a;Gask1a;Gask1a;Gask1a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,245050,ENSMUSG00000038233,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25282,cg18297990,-0.0000514,0.00000873,-5.888527636,1.01E-08,loss,yes,0.00000326,0.0000148,0.219981655,0.826030232,pos,ns,-0.009287034,0.004346884,-2.136480867,0.033423032,neg,ns,1.475954157,-0.0000446,0.000149489,-0.298139824,0.765796173,neg,ns,0.914549408,Ppfia4,Ppfia4_Exon,1,134304334,134304383,134304334,134304335,50,-,CGGTCATAATTCAGCCTCTTCAGACACATGATGCCATACTGAAGACTGGT,"Exon (Ppfia4-201/Ppfia4, exon 24 of 29)",1,134296783,134332928,36146,2,Ppfia4-201,28545,Ppfia4-201;Ppfia4-203;Ppfia4-204;Ppfia4-206;Ppfia4-205;Ppfia4-202,Ppfia4;Ppfia4;Ppfia4;Ppfia4;Ppfia4;Ppfia4,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,68507,ENSMUSG00000026458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17781,cg16237991,0.000000639,0.00000183,0.348851493,0.727437621,gain,ns,0.000000683,0.00000311,0.21974424,0.826214975,pos,ns,0.002012096,0.000911064,2.208512525,0.027940018,pos,ns,1.553773313,-0.000112616,0.0000313,-3.594335893,0.000378193,neg,ns,0.955237356,Son,Son_threeUTR,16,91662734,91662783,91662782,91662783,50,-,AACATTTCGGGTTTTGGCTGTTTGGTACCAGCCATTGGCGATAATGGCCG,3' UTR,16,91647506,91679207,31702,1,Son-203,15228,Son-203;Son-204;Son-202;Son-208;Son-201;Son-205;Son-212;Son-207,Son;Son;Son;Son;Son;Son;Son;Son,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,14,31,20658,ENSMUSG00000022961,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13263,cg04498823,-0.0000112,0.00000837,-1.332692362,0.183611479,loss,ns,0.00000312,0.0000142,0.219677773,0.826266698,pos,ns,-0.001621216,0.004166087,-0.389146008,0.697435311,neg,ns,0.156496068,0.0000665,0.000143271,0.464282579,0.642771184,pos,ns,0.510165587,Pebp4,Pebp4_Intron,14,69934145,69934194,69934193,69934194,50,+,GGCTGGTGACTGACACAAATGGAATTCATCTTTAATCATCTGTTAACTCG,"Intron (Pebp4-201/Pebp4, intron 3 of 6)",14,69840420,70059918,219499,1,Pebp4-201,93725,Pebp4-201,Pebp4,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,14,14,73523,ENSMUSG00000022085,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4057,cg00873201,0.00000745,0.00000483,1.542963639,0.123859764,gain,ns,0.0000018,0.00000821,0.219598785,0.826328164,pos,ns,-0.003540294,0.002404726,-1.472223683,0.141974974,neg,ns,0.847788201,0.000157127,0.0000827,1.900000489,0.058360806,pos,ns,0.855178011,Gm45647,Gm45647_Intergenic_upstream,8,26677589,26677638,26677637,26677638,50,+,TCCCAAATGCCGAGTCGGTGGTTTGTCATAACAGTCATCAGTAACTGTCG,Distal Intergenic,8,26780315,26780509,195,1,Gm45647-201,-102677,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,46,62,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15157,cg18089077,0.0000363,0.00000576,6.301565638,1.01E-09,gain,yes,-0.00000215,0.00000978,-0.219517212,0.826391645,neg,ns,0.004218349,0.002865926,1.471897018,0.142063133,pos,ns,0.84751861,-0.0000345,0.0000986,-0.349971764,0.72659754,neg,ns,0.052987177,Cerkl,Cerkl_Promoter,2,79456973,79457022,79457021,79457022,50,+,AGTGGCCCATCTGTCGCCAGTTAGAGACTCCGCGGACCTGTTTTTACCCG,Promoter (<=1kb),2,79338569,79456785,118217,2,Cerkl-210,-188,Cerkl-210;Neurod1-201,Cerkl;Neurod1,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,13,15,228094,ENSMUSG00000075256,mapped to different genes,2,79456843,79457022,180,*,180,14,0.622222222,0.830039526,0.077777778,1.72E-09,CpGisland,TRUE,U13,Hc-P
12243,cg16626387,-0.00000138,0.000000851,-1.621258539,0.105978839,loss,ns,0.000000317,0.00000145,0.219431116,0.826458645,pos,ns,0.000186832,0.000423507,0.441154127,0.659408938,pos,ns,0.18084517,-0.0000137,0.0000146,-0.943884871,0.345963528,neg,ns,0.030704116,Ptch1,Ptch1_fiveUTR,13,63563722,63563771,63563722,63563723,50,+,CGCAGTTTTTTTGAATGTAACAACCCAGTTTAAATAAGAGTCTCTGAAAC,5' UTR,13,63508328,63565735,57408,2,Ptch1-201,1964,Ptch1-201;Ptch1-204;Ptch1-206;Ptch1-202;Ptch1-207;Ptch1-203;Ptch1-205,Ptch1;Ptch1;Ptch1;Ptch1;Ptch1;Ptch1;Ptch1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,9,36,19206,ENSMUSG00000021466,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
20328,cg11690941,-0.0000129,0.00000579,-2.232875191,0.026270852,loss,ns,0.00000216,0.00000984,0.2193233,0.826542551,pos,ns,-0.002483081,0.002882465,-0.861443576,0.389659609,neg,ns,0.409314609,-0.0000437,0.0000991,-0.44090115,0.659591879,neg,ns,0.892038985,Unc79,Unc79_Exon,12,102998639,102998688,102998687,102998688,50,-,TGATGCTCAGTTGTCAGACTACCCTTCTTTGGACTACCAAGGCCTCTACG,"Exon (Unc79-202/Unc79, exon 3 of 49)",12,102948859,103184001,235143,1,Unc79-202,49780,Unc79-202;Unc79-208;Unc79-209;Unc79-204;Unc79-201;Unc79-205,Unc79;Unc79;Unc79;Unc79;Unc79;Unc79,0;0;-2379;-3150;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,24,217843,ENSMUSG00000021198,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2357,cg04087693,0.0000278,0.0000043,6.471941704,3.78E-10,gain,yes,-0.0000016,0.0000073,-0.219296473,0.826563428,neg,ns,0.002752195,0.002139051,1.286642657,0.19917886,pos,ns,0.700756758,-0.0000843,0.0000736,-1.146123039,0.252628177,neg,ns,0.057657809,Tfap2d,Tfap2d_Intron,1,19107490,19107539,19107490,19107491,50,-,CGACTCTCTCCGCATTTACTTAACTCTTCACGGGCTGTTGGGTAGGTTAA,"Intron (Tfap2d-201/Tfap2d, intron 2 of 7)",1,19103022,19166346,63325,1,Tfap2d-201,4468,Tfap2d-201;Tfap2d-202,Tfap2d;Tfap2d,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,23,226896,ENSMUSG00000042596,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24433,cg11109664,0.000049,0.0000101,4.848267852,0.00000197,gain,ns,-0.00000377,0.0000172,-0.219266507,0.826586749,neg,ns,0.006204598,0.005032889,1.232810338,0.218580611,pos,ns,0.660388365,-0.000275273,0.000173081,-1.590432725,0.11275654,neg,ns,0.470261187,Csf3r,Csf3r_Intergenic_upstream,4,125949832,125949881,125949880,125949881,50,-,CCCCGAATCAATAGTCCATTCCATTTAACAGGGTGGCTGTCACCATAACG,Distal Intergenic,4,126024550,126044440,19891,1,Csf3r-202,-74718,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,7,12986,ENSMUSG00000028859,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21114,cg04250847,0.0000244,0.00000421,5.789503988,1.73E-08,gain,yes,-0.00000157,0.00000716,-0.219169595,0.826662171,neg,ns,0.005783305,0.002097187,2.75764895,0.00616727,pos,ns,2.209907027,-0.000134814,0.0000721,-1.869251479,0.06253054,neg,ns,0.042837051,Ppfia2,Ppfia2_fiveUTR,10,106470299,106470348,106470347,106470348,50,+,GAACCGAGCTTTGCTTCCCAAAGCAAAATTTGTAATATGCCATTTTTCCG,Promoter (<=1kb),10,106470339,106932492,462154,1,Ppfia2-201,0,Ppfia2-201;Ppfia2-202;Ppfia2-203,Ppfia2;Ppfia2;Ppfia2,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,9,327814,ENSMUSG00000053825,conserved gene and region,10,106470347,106470479,133,*,133,10,0.593984962,0.852564103,0.07518797,0.000000942,CpGisland,TRUE,U3,Pr-B
21994,cg19851197,0.000000163,0.00000737,0.022171697,0.982325259,gain,ns,0.00000274,0.0000125,0.21893468,0.826845002,pos,ns,0.002351488,0.003668971,0.640912013,0.522053356,pos,ns,0.282285108,-0.000134327,0.000126176,-1.064603025,0.287884125,neg,ns,0.826964653,Dmrta2,Dmrta2_Intergenic_downstream,4,110033131,110033180,110033131,110033132,50,-,CGCCAGTGACATTTAGCTGACACACAAGGAGGAGGCTGGCATTTTTAGAC,Distal Intergenic,4,109978053,109983687,5635,1,Dmrta2-201,55127,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,13,242620,ENSMUSG00000047143,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12338,cg15613974,-0.00000754,0.0000019,-3.974030145,0.000088,loss,ns,0.000000706,0.00000322,0.218914335,0.826860836,pos,ns,0.000243392,0.000944434,0.257711735,0.79680038,pos,ns,0.098650468,-0.0000628,0.0000325,-1.934133976,0.054006564,neg,ns,0.953097051,Fign,Fign_threeUTR,2,63978707,63978756,63978755,63978756,50,+,TGCTAGGCTGAATCTTGCAGAAAGCATTTTCAAAGTCTTGATATGTAACG,3' UTR,2,63971507,64098012,126506,2,Fign-203,119256,Fign-203;Fign-201;Fign-202;Fign-204,Fign;Fign;Fign;Fign,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,14,84,60344,ENSMUSG00000075324,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20158,cg09660031,-0.0000101,0.00000421,-2.397457731,0.017100761,loss,ns,-0.00000156,0.00000715,-0.218869568,0.826895679,neg,ns,0.0000523,0.002094288,0.024976005,0.980090172,pos,ns,0.008733966,0.0000194,0.000072,0.269619092,0.787632691,pos,ns,0.955290335,Mast4,Mast4_Exon,13,102754217,102754266,102754217,102754218,50,+,CGTCCATTTATCTGATCCAAGTGCTCTGAAAAACTGCCAACTGTACAAAG,"Exon (Mast4-220/Mast4, exon 23 of 28)",13,102732486,103334192,601707,2,Mast4-205,579926,Mast4-205;Mast4-220;Mast4-207;Mast4-218;Mast4-212;Mast4-201;Mast4-208;Mast4-213,Mast4;Mast4;Mast4;Mast4;Mast4;Mast4;Mast4;Mast4,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,8,328329,ENSMUSG00000034751,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6074,cg26573821,0.0000341,0.00000912,3.736264908,0.000222296,gain,ns,0.00000339,0.0000155,0.218819691,0.826934499,pos,ns,0.00302156,0.004541604,0.665306844,0.506348933,pos,ns,0.295550101,0.0000424,0.000156185,0.271635978,0.78608274,pos,ns,0.292827666,Psd2,Psd2_Intergenic_upstream,18,35933747,35933796,35933795,35933796,50,-,AAATCATAATTTGACAATAATCATCTGCCCTAATCACTCCAATTCTTCCG,Distal Intergenic,18,35964830,36014712,49883,1,Psd2-201,-31083,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,24,29,74002,ENSMUSG00000024347,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
17140,cg21930209,0.00000282,0.00000161,1.759260418,0.079519742,gain,ns,0.000000597,0.00000273,0.218789132,0.826958284,pos,ns,0.00018853,0.000799198,0.235898292,0.813667367,pos,ns,0.089553101,-0.0000284,0.0000275,-1.031549947,0.303087108,neg,ns,0.00789633,Arl4c,Arl4c_Exon,1,88701522,88701571,88701570,88701571,50,+,TTGAAGCCGATGGTGGGCACCGTGTTCACGAACTCGTTGAACTTGAGCCG,Promoter (<=1kb),1,88673125,88701876,28752,2,Arl4c-201,305,Arl4c-201;Arl4c-203;Arl4c-202,Arl4c;Arl4c;Arl4c,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,320982,ENSMUSG00000049866,conserved gene and region,1,88700885,88702514,1630,*,1630,169,0.66196319,0.948725367,0.103680982,1.91E-130,CpGisland,TRUE,U3,Pr-B
24656,cg00666549,0.0000769,0.0000408,1.887695718,0.060000678,gain,ns,0.0000151,0.0000693,0.218395319,0.827264813,pos,ns,-0.025539772,0.020287988,-1.25886177,0.209027411,neg,ns,0.679796758,0.000724166,0.000697702,1.037929839,0.300111619,pos,ns,0.359085571,Stac3,Stac3_Intergenic_downstream,10,127510332,127510381,127510332,127510333,50,+,CGGCAGCTGTCCCTAATTAGAGCGGCGGTTTAATTGGATTTATCAGCAGT,Distal Intergenic,10,127507225,127507992,768,1,Stac3-205,3107,Ndufa4l2-203;Ndufa4l2-202;Ndufa4l2-201;Stac3-202;Stac3-201;Stac3-204;Stac3-205,Ndufa4l2;Ndufa4l2;Ndufa4l2;Stac3;Stac3;Stac3;Stac3,-4586;-4586;0;0;0;5841;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,4,237611,ENSMUSG00000040287,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
1834,cg14707997,-0.0000254,0.00000913,-2.7812425,0.005746613,loss,ns,0.00000339,0.0000155,0.2183902,0.827268797,pos,ns,0.001718491,0.004541662,0.378383785,0.705404498,pos,ns,0.151561776,-0.000171305,0.000156187,-1.096794281,0.27358259,neg,ns,0.631734347,Gli3,Gli3_Intron,13,15486600,15486649,15486600,15486601,50,+,CGAAAAGTAATTTACAGATAGGCTGTCCCCAGCCATCTTTGTAGCCCCTG,"Intron (Gli3-202/Gli3, intron 2 of 11)",13,15463235,15715091,251857,1,Gli3-202,23365,Gli3-202;Gli3-204;Gli3-203;Gli3-201,Gli3;Gli3;Gli3;Gli3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,19,21,14634,ENSMUSG00000021318,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11735,cg24514797,-0.0000204,0.00000502,-4.058701199,0.0000625,loss,ns,-0.00000186,0.00000852,-0.218293049,0.82734442,neg,ns,-0.008150902,0.002496685,-3.264689827,0.0012184,neg,ns,2.914210216,0.000182039,0.0000859,2.120166485,0.034786105,pos,ns,0.903239653,Fam204a,Fam204a_Intergenic_upstream,19,60292747,60292796,60292795,60292796,50,+,ACTGCAGAAAGTGTATATTCTTATCAACACGCCTGTTGCCTGGAGGAGCG,Distal Intergenic,19,60199435,60226701,27267,2,Fam204a-205,-66046,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,14,76539,ENSMUSG00000057858,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21607,cg06227152,0.00000267,0.0000028,0.95525468,0.340193228,gain,ns,-0.00000104,0.00000475,-0.218175785,0.827435701,neg,ns,0.001511723,0.001392613,1.085530154,0.278530337,pos,ns,0.555127495,-0.0000469,0.0000479,-0.979091649,0.328298155,neg,ns,0.481940193,Zfhx3,Zfhx3_Intron,8,108537612,108537661,108537612,108537613,50,-,CGACTCACTCACAATGAATAATCAATACGGATATTGATCTGGGGAAAATG,"Intron (Zfhx3-204/Zfhx3, intron 4 of 15)",8,107942644,108961630,1018987,1,Zfhx3-204,594968,Zfhx3-204,Zfhx3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,114,177,11906,ENSMUSG00000038872,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23851,cg20804050,0.0000402,0.0000037,10.85780573,1.72E-23,gain,yes,-0.00000137,0.00000629,-0.218167824,0.827441898,neg,ns,0.005793317,0.001842225,3.144738314,0.001823463,pos,ns,2.739103033,-0.0000643,0.0000634,-1.015557026,0.310632329,neg,ns,0.021185775,En1,En1_Promoter,1,120602314,120602363,120602314,120602315,50,-,CGTGCGGCCCTGACTCACGTGCTTCCGGTTTGAAGGCAAAAAGTGTGCCT,Promoter (<=1kb),1,120602418,120607992,5575,1,En1-201,-104,En1-201,En1,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,23,36,13798,ENSMUSG00000058665,conserved gene and region,1,120602094,120602340,247,*,247,23,0.668016194,0.838400236,0.093117409,4.24E-17,CpGisland,TRUE,U3,Pr-B
9796,cg08321639,0.0000165,0.00000557,2.966303521,0.003248349,gain,ns,-0.00000206,0.00000946,-0.218059864,0.827525939,neg,ns,0.001800873,0.002770221,0.650082775,0.516120205,pos,ns,0.287249139,-0.000038,0.0000953,-0.39870855,0.690382457,neg,ns,0.031668802,Trps1,Trps1_Promoter,15,50890050,50890099,50890050,50890051,50,+,CGTCAGTTTCAAGACACCAACACTATTAATATCAAAGGAGCCTTCGCGGA,Promoter (<=1kb),15,50846176,50890463,44288,2,Trps1-208,364,Trps1-202;Trps1-206;Trps1-204;Trps1-205;Trps1-201;Trps1-208,Trps1;Trps1;Trps1;Trps1;Trps1;Trps1,0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,9,36,83925,ENSMUSG00000038679,conserved gene but different region,15,50889915,50890051,137,*,137,13,0.554744526,1.255109232,0.094890511,6.21E-10,CpGisland,TRUE,U2,Pr-W
20397,cg03721347,0.0000981,0.0000193,5.092688038,0.000000614,gain,yes,0.00000713,0.0000327,0.217939444,0.827619682,pos,ns,0.024709928,0.009590647,2.576460915,0.010444239,pos,ns,1.981123204,-0.000854663,0.000329822,-2.591289463,0.010014,neg,ns,0.467538737,Hoxc4,Hoxc4_Intron,15,103029283,103029332,103029283,103029284,50,+,CGAAGAGACAAATTTCAATGGAGTTTCCCCATCAATAACCCCATGGCAGT,"Intron (Hoxc4-202/Hoxc4, intron 1 of 3)",15,103018934,103036405,17472,1,Hoxc4-202,10349,Hoxc4-202,Hoxc4,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,91,15423,ENSMUSG00000075394,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
15759,cg17042387,-0.0000032,0.00000445,-0.720178728,0.471957612,loss,ns,-0.00000165,0.00000756,-0.217816819,0.827715143,neg,ns,-0.003297674,0.002214352,-1.489227244,0.137444167,neg,ns,0.861873687,0.0000266,0.0000762,0.349127088,0.727230924,pos,ns,0.868946782,Dctn1,Dctn1_fiveUTR,6,83186262,83186311,83186310,83186311,50,-,GAGGCTGAGACTGCATTGTTGGGATTTGATGCACTAATCTCCTGTCTCCG,5' UTR,6,83165920,83200116,34197,1,Dctn1-201,20342,Dctn1-201;Dctn1-203;Dctn1-208;Dctn1-205;Dctn1-204;Dctn1-210;Dctn1-202;Dctn1-206,Dctn1;Dctn1;Dctn1;Dctn1;Dctn1;Dctn1;Dctn1;Dctn1,0;0;0;0;0;0;0;-2300,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,2,13191,ENSMUSG00000031865,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21852,cg22155118,0.00000483,0.00000316,1.526497229,0.12790568,gain,ns,-0.00000117,0.00000537,-0.217796006,0.827731346,neg,ns,0.002808637,0.001574524,1.783801334,0.075434056,pos,ns,1.122432541,-0.000103819,0.0000541,-1.917333651,0.056114404,neg,ns,0.964566676,Gm1943,Gm1943_Exon,8,109251634,109251683,109251634,109251635,50,+,CGAAGAATTACAGTTAACTTTTCCCACAGGGTACAGACGCCAGCCGCTTG,"Exon (D030068K23Rik-202/D030068K23Rik-202, exon 10 of 10)",8,109340691,109340864,174,2,Gm1943-201,89181,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,28,384864,NA,mapped to different genes,8,109251360,109251796,437,*,437,24,0.544622426,0.749571184,0.054919909,1.62E-12,CpGisland,TRUE,U15,NS
15212,cg15541477,-0.0000349,0.00000613,-5.689704542,2.95E-08,loss,yes,0.00000227,0.0000104,0.217777365,0.827745858,pos,ns,-0.001330303,0.003052414,-0.435819923,0.663270707,neg,ns,0.178309183,0.00000897,0.000104972,0.085433803,0.93197167,pos,ns,0.864394748,Gtpbp1,Gtpbp1_Exon,15,79694233,79694282,79694233,79694234,50,-,CGGAGAGACCATATATGTCATTGGGCAGGGATCAGGTGAGCATAGTTTTC,"Exon (Gtpbp1-201/Gtpbp1, exon 2 of 12)",15,79690845,79721479,30635,1,Gtpbp1-201,3388,Gtpbp1-201;Gtpbp1-208;Gtpbp1-203;Gtpbp1-206,Gtpbp1;Gtpbp1;Gtpbp1;Gtpbp1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,4,14904,ENSMUSG00000042535,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22510,cg11851489,-0.00000526,0.00000321,-1.640336329,0.1019495,loss,ns,-0.00000119,0.00000545,-0.217680017,0.827821644,neg,ns,-0.000772404,0.001596424,-0.483833567,0.628845589,neg,ns,0.201455981,0.000100103,0.0000549,1.823341425,0.069214598,pos,ns,0.932838558,Rps4l-ps,Rps4l-ps_Intergenic_downstream,7,114897056,114897105,114897056,114897057,50,-,CGACGATGTTAATTGCACTGATGGCTCGTTATTTGGGGAATTGCCATGCA,Distal Intergenic,7,114926959,114927726,768,2,Rps4l-ps-201,30670,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,13,19,627967,NA,mapped to different genes,7,114896968,114897083,116,*,116,9,0.50862069,1.202764977,0.077586207,0.00000318,CpGisland,TRUE,U15,NS
24991,cg10603790,0.0000565,0.00000891,6.340786764,8.07E-10,gain,yes,0.00000329,0.0000151,0.21767556,0.827825114,pos,ns,0.007981765,0.004433637,1.800274841,0.072789278,pos,ns,1.13793259,0.000183045,0.000152472,1.200514635,0.230856086,pos,ns,0.524514462,Lef1,Lef1_Intron,3,131137293,131137342,131137341,131137342,50,-,CTTCAAAGGCTGCTGCCTCCTCCTAGATGGAGAGACTTGGCTGCCACTCG,"Intron (Lef1-201/Lef1, intron 3 of 11)",3,131110471,131224356,113886,1,Lef1-201,26822,Lef1-201;Lef1-202;Lef1-204;Lef1-203;Lef1-205;Lef1-208;Lef1-207,Lef1;Lef1;Lef1;Lef1;Lef1;Lef1;Lef1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,9,16842,ENSMUSG00000027985,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17628,cg08917841,0.00000864,0.0000108,0.801702764,0.423339011,gain,ns,0.00000399,0.0000183,0.217641008,0.827852013,pos,ns,0.014827944,0.005366697,2.762955151,0.006070307,pos,ns,2.216789342,-0.000563553,0.00018456,-3.053488018,0.002458055,neg,ns,0.827014582,Olig1,Olig1_Intron,16,91301717,91301766,91301717,91301718,50,-,CGTGGGCGTTTCCAACATAAAAAGGGGGATTCTGTTATTGTTTGGGTGTA,"Intron (Gm15966-209/Gm15966-209, intron 1 of 2)",16,91269772,91271933,2162,1,Olig1-201,31994,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,9,50914,ENSMUSG00000046160,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19312,cg26741666,0.000000402,0.00000137,0.294345101,0.76869121,gain,ns,0.000000505,0.00000232,0.217425936,0.828019456,pos,ns,0.002036504,0.00067993,2.995165351,0.002964088,pos,ns,2.528108855,-0.0000448,0.0000234,-1.91596854,0.05628866,neg,ns,0.963257976,Foxp1,Foxp1_Intron,6,98968861,98968910,98968909,98968910,50,-,TATCACATCTTCAGTGACCATGTAGGTCACTGTCACTAGGCATGCTTCCG,"Intron (Foxp1-206/Foxp1, intron 9 of 17)",6,98925338,99266515,341178,2,Foxp1-206,297605,Foxp1-206;Foxp1-204;Foxp1-220;Foxp1-230;Foxp1-225;Foxp1-201;Foxp1-205;Foxp1-207;Foxp1-208;Foxp1-226;Foxp1-228;Foxp1-221;Foxp1-222;Foxp1-210;Foxp1-213,Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,87,108655,ENSMUSG00000030067,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12952,cg16769396,-0.000011,0.00000464,-2.382170704,0.017813745,loss,ns,0.00000171,0.00000787,0.217287481,0.828127253,pos,ns,0.001731094,0.0023069,0.750398458,0.453583928,pos,ns,0.343342343,-0.0000611,0.0000793,-0.770578507,0.441543672,neg,ns,0.909995071,Fmr1,Fmr1_Exon,X,68710712,68710761,68710760,68710761,50,+,AATGGGTCGAGGTAGTAGACCTTACAGAAATAGGGGGCACGGCAGACGCG,"Exon (Fmr1-201/Fmr1, exon 14 of 17)",20,68678541,68717963,39423,1,Fmr1-201,32171,Fmr1-201;Fmr1-212;Fmr1-213;Fmr1-205;Fmr1-203;Fmr1-204;Fmr1-206;Fmr1-202;Fmr1-211;Fmr1-208,Fmr1;Fmr1;Fmr1;Fmr1;Fmr1;Fmr1;Fmr1;Fmr1;Fmr1;Fmr1,0;32130;32130;0;0;0;0;0;15914;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,8,14265,ENSMUSG00000000838,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14989,cg06015753,-0.00000627,0.00000319,-1.963987789,0.050424812,loss,ns,0.00000118,0.00000542,0.217172061,0.828217118,pos,ns,0.00092963,0.00158831,0.585295379,0.558774922,pos,ns,0.252763093,-0.00010651,0.0000546,-1.949954737,0.052082733,neg,ns,0.938378357,Slc14a2,Slc14a2_Intron,18,78378157,78378206,78378157,78378158,50,+,CGACCAATTATTATTCAGAAAAATCCTGCTGTTTAGCCAAAGAGCGTACA,"Intron (Slc14a2-206/Slc14a2, intron 2 of 21)",18,78146148,78596942,450795,2,Slc14a2-206,218736,Slc14a2-206;Slc14a2-203,Slc14a2;Slc14a2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,12,27411,ENSMUSG00000024552,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7382,cg09272819,-0.0000172,0.00000433,-3.973788352,0.000088,loss,ns,0.0000016,0.00000736,0.216954965,0.828386153,pos,ns,-0.003496666,0.00215624,-1.621649926,0.105894919,neg,ns,0.975124879,0.0000858,0.0000742,1.157065289,0.24813648,pos,ns,0.934142652,R3hcc1l,R3hcc1l_Intergenic_upstream,19,42483969,42484018,42483969,42483970,50,-,CGATTAACTGTGAGAGGGGCCACTTGACTCGCAGTTCATGTTTTAAGTAT,Distal Intergenic,19,42518759,42592343,73585,1,R3hcc1l-201,-34790,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,13,52013,ENSMUSG00000025184,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10809,cg24118289,0.00000265,0.0000137,0.193761438,0.846489582,gain,ns,-0.00000504,0.0000233,-0.216868185,0.828453724,neg,ns,-0.020084807,0.006812955,-2.948031695,0.00344099,neg,ns,2.463316651,0.000642827,0.000234297,2.743643129,0.006429974,pos,ns,0.796502694,Adcyap1r1,Adcyap1r1_Exon,6,55491278,55491327,55491326,55491327,50,-,TTGCAAGATGTCAGAACTGTCCACCATTACTCTGTAAGTGTGCGTGGCCG,"Exon (Adcyap1r1-201/Adcyap1r1, exon 14 of 17)",6,55451978,55498905,46928,1,Adcyap1r1-201,39300,Adcyap1r1-201;Adcyap1r1-202;Adcyap1r1-204;Adcyap1r1-206;Adcyap1r1-208;Adcyap1r1-203,Adcyap1r1;Adcyap1r1;Adcyap1r1;Adcyap1r1;Adcyap1r1;Adcyap1r1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,11517,ENSMUSG00000029778,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23463,cg08701183,0.0000527,0.00000754,6.998831617,1.60E-11,gain,yes,-0.00000278,0.0000128,-0.216810684,0.828498498,neg,ns,0.010776863,0.003750829,2.873194919,0.004343937,pos,ns,2.362116437,-0.000196978,0.000128991,-1.527074551,0.127762102,neg,ns,0.303969612,Gm9267,Gm9267_Intron,12,118529812,118529861,118529860,118529861,50,+,CATGTAAGGTAAATGCTTCAAAGGCCCCCCTTTCAAATTACAGCTCTCCG,"Intron (D230030E09Rik-201/D230030E09Rik-201, intron 1 of 3)",12,118602677,118603080,404,1,Gm9267-201,-72816,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,20,668611,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
12281,cg00010977,-0.00000667,0.00000258,-2.585235858,0.010187687,loss,ns,0.000000951,0.00000439,0.216764163,0.828534723,pos,ns,0.002860657,0.00128506,2.226087827,0.026726944,pos,ns,1.573050696,-0.000117384,0.0000442,-2.656160327,0.008312499,neg,ns,0.963642128,Fign,Fign_Intergenic_downstream,2,63820096,63820145,63820144,63820145,50,-,CCAGTCACAGATATTAAAATGAATTATATCTAATCTGAATTTTAGTCACG,Distal Intergenic,2,63980447,64097988,117542,2,Fign-202,277892,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,28,84,60344,ENSMUSG00000075324,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4886,cg20502082,-0.00000126,0.000000627,-2.005534507,0.045774721,loss,ns,-0.000000231,0.00000106,-0.216704847,0.828580911,neg,ns,0.000360362,0.000311823,1.155660868,0.248709821,pos,ns,0.604307065,-0.0000257,0.0000107,-2.400596684,0.016957514,neg,ns,0.013178766,Gm29609,Gm29609_fiveUTR,5,31179891,31179940,31179939,31179940,50,+,AAAGTCCTTCCGGAAGTCTAAGTTCGAAGATGGCGCCGCCTGTCTGGTCG,Promoter (<=1kb),5,31151142,31179911,28770,2,Gm29609-201,0,Gm29609-201;Gtf3c2-208;Gtf3c2-201;Gtf3c2-210;Gtf3c2-211;Gtf3c2-207;Gtf3c2-206;Gtf3c2-205,Gm29609;Gtf3c2;Gtf3c2;Gtf3c2;Gtf3c2;Gtf3c2;Gtf3c2;Gtf3c2,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,2,115482680,NA,mapped to different genes,5,31179712,31180191,480,*,480,52,0.616666667,1.142072752,0.108333333,1.11E-41,CpGisland,TRUE,U1,Pr-A
14161,cg08505456,0.0000153,0.0000042,3.637572096,0.000322234,gain,ns,0.00000154,0.00000713,0.216695913,0.828587867,pos,ns,-0.000594355,0.00208812,-0.28463625,0.776112883,neg,ns,0.110075107,0.0000665,0.0000718,0.926261046,0.355030865,pos,ns,0.087041863,Hoxd3,Hoxd3_Promoter,2,74711832,74711881,74711880,74711881,50,-,TGACCTATTTGCGGTCGTCATTGGCTGCGGCTGGTCATGTGCAGGCGCCG,Promoter (<=1kb),2,74711927,74748271,36345,1,Hoxd3-203,-95,Hoxd3-203;Hoxd4-203;Hoxd8-201;Hoxd8-202,Hoxd3;Hoxd4;Hoxd8;Hoxd8,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,7,24,15434,ENSMUSG00000079277,mapped to different genes,2,74711843,74711929,87,*,87,9,0.632183908,1.044,0.103448276,0.000000274,CpGisland,TRUE,U3,Pr-B
25115,cg27414236,0.0000173,0.0000156,1.107043173,0.269133535,gain,ns,-0.00000575,0.0000265,-0.216640735,0.828630834,neg,ns,0.022510858,0.007770101,2.897112801,0.004034256,pos,ns,2.394236574,-0.000462321,0.000267213,-1.730159406,0.084597037,neg,ns,0.199834164,Ahdc1,Ahdc1_Intron,4,133013739,133013788,133013787,133013788,50,-,CCCCAGCTCCCTGGGCAGAGCTCAGGGTGTGAGGACAAGCTTTGCCTCCG,"Intron (Ahdc1-210/Ahdc1, intron 2 of 3)",4,133011260,133060820,49561,1,Ahdc1-210,2479,Ahdc1-210;Ahdc1-203;Ahdc1-204;Ahdc1-205;Ahdc1-207;Ahdc1-211;Ahdc1-209;Ahdc1-206;Ahdc1-201,Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,35,49,230793,ENSMUSG00000037692,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U4,Pr-F
11205,cg26508479,0.00000268,0.00000332,0.807769587,0.419842621,gain,ns,0.00000122,0.00000563,0.21656186,0.828692254,pos,ns,0.003564177,0.001650195,2.159851276,0.031550556,pos,ns,1.50099298,-0.000127395,0.0000568,-2.244845012,0.02548297,neg,ns,0.095324738,Satb2,Satb2_fiveUTR,1,56971991,56972040,56971991,56971992,50,+,CGGGGGGAGGGGGGCCCCGCCTGGCAGGAAATTAAACATCAATCAATCAA,Promoter (<=1kb),1,56793981,56972502,178522,2,Satb2-201,462,Satb2-201;Satb2-202;Satb2-205;Satb2-203;Satb2-204,Satb2;Satb2;Satb2;Satb2;Satb2,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,9,33,212712,ENSMUSG00000038331,mapped to different genes,1,56971892,56972098,207,*,207,12,0.657004831,0.621155289,0.057971015,0.00000084,CpGisland,TRUE,U3,Pr-B
16541,cg02448802,0.00000877,0.00000341,2.570077586,0.010634481,gain,ns,-0.00000126,0.0000058,-0.216545072,0.828705327,neg,ns,0.01093173,0.001698689,6.435392926,4.67E-10,pos,ns,9.33056359,-0.000383434,0.0000584,-6.563653982,2.21E-10,neg,yes,0.885906684,Camkmt,Camkmt_Intron,17,85393705,85393754,85393753,85393754,50,+,ATTTTACCTCAGTGTAGTCAATATTGCTTGTTGTGACATTCCAGGCCTCG,"Intron (Camkmt-201/Camkmt, intron 5 of 10)",17,85090552,85458588,368037,1,Camkmt-201,303153,Camkmt-201,Camkmt,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,41,44,73582,ENSMUSG00000071037,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25836,cg09709213,0.0000125,0.00000697,1.797986159,0.073152094,gain,ns,0.00000257,0.0000118,0.216527257,0.828719199,pos,ns,0.007303204,0.003471513,2.103752309,0.036205383,pos,ns,1.441226851,-0.000112794,0.000119385,-0.944792324,0.345500697,neg,ns,0.148412607,Uncx,Uncx_Intergenic_downstream,5,139599958,139600007,139600006,139600007,50,+,CTCGATTGCTGTGTTATAAACATTTACACTGTGCTAACAGATCATCTCCG,Distal Intergenic,5,139543898,139545268,1371,1,Uncx-202,56060,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,59,88,22255,ENSMUSG00000029546,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
25421,cg12543498,-0.00000612,0.00000248,-2.470906047,0.014014589,loss,ns,-0.00000091,0.00000421,-0.216454014,0.828776235,neg,ns,-0.0007775,0.001231956,-0.631110541,0.528433286,neg,ns,0.277009834,-0.0000433,0.0000424,-1.021749085,0.307696357,neg,ns,0.956243318,Gm5904,Gm5904_Intergenic_upstream,7,136360526,136360575,136360574,136360575,50,-,ACCTGGCAGAGTGCTGATATTTGTTAGACCCTGTCATATGGTTGATGGCG,Distal Intergenic,7,136657209,136658073,865,1,Gm5904-201,-296683,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,14,17,546009,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27939,cg16248254,-0.0000067,0.00000964,-0.694836919,0.48767796,loss,ns,0.00000354,0.0000164,0.216435764,0.828790447,pos,ns,0.006417629,0.004797253,1.337771572,0.181951471,pos,ns,0.74004443,-0.000402368,0.000164977,-2.438932866,0.015291549,neg,ns,0.826531025,Rps6kc1,Rps6kc1_Intron,1,190713993,190714042,190714041,190714042,50,+,GCATTATTAAATGCTCTTTGCATCATTCTTCTGACTTCTTGTAATTCACG,"Intron (Rps6kc1-204/Rps6kc1, intron 11 of 12)",1,190700202,190911747,211546,2,Rps6kc1-204,197705,Rps6kc1-204,Rps6kc1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,29,320119,ENSMUSG00000089872,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16906,cg02572873,0.00000438,0.0000015,2.915371573,0.003811551,gain,ns,0.000000553,0.00000256,0.216379994,0.828833877,pos,ns,0.001064998,0.000748541,1.422766079,0.155809475,pos,ns,0.807406135,-0.0000298,0.0000257,-1.156476561,0.248376709,neg,ns,0.960844598,Eif4e2,Eif4e2_Exon,1,87232391,87232440,87232439,87232440,50,-,CTGGTTTGCCAGGGCCTGGGAGGAGTTTCATGGCCTGGTGAACAGCAGCG,"Exon (Eif4e2-207/Eif4e2, exon 7 of 8)",1,87213914,87234711,20798,1,Eif4e2-201,18477,Eif4e2-206;Eif4e2-201;Eif4e2-202;Eif4e2-207;Eif4e2-204,Eif4e2;Eif4e2;Eif4e2;Eif4e2;Eif4e2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,6,26987,ENSMUSG00000026254,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24284,cg12220993,0.0000082,0.00000235,3.496871286,0.000539529,gain,ns,-0.000000862,0.00000398,-0.21633946,0.828865442,neg,ns,0.00306513,0.001167266,2.625904408,0.009070795,pos,ns,2.042354637,-0.000120661,0.0000401,-3.005831133,0.002864946,neg,ns,0.03762719,Pou3f1,Pou3f1_Intron,4,124478168,124478217,124478216,124478217,50,-,TGAGACGGAAAGCCACTTTGAGGACAGCTTGTTTGGAAATCCCATTAACG,"Intron (1700057H15Rik-202/1700057H15Rik-202, intron 2 of 3)",4,124656807,124660655,3849,1,Pou3f1-201,-178639,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,43,85,18991,ENSMUSG00000090125,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
20564,cg10283177,-0.0000111,0.00000792,-1.404866071,0.16106234,loss,ns,-0.00000291,0.0000135,-0.216304989,0.828892287,neg,ns,-0.003386685,0.003943241,-0.858858214,0.391082352,neg,ns,0.407731782,-0.0000143,0.000135608,-0.10544141,0.916093752,neg,ns,0.840781569,Ptpn13,Ptpn13_Exon,5,103540981,103541030,103540981,103540982,50,+,CGTTTAGGAGCCTGAATCTCCAAGCAGAGTCTGTTAGAGGATTTAATATG,"Exon (Ptpn13-204/Ptpn13, exon 18 of 18)",5,103425192,103541434,116243,1,Ptpn13-204,115789,Ptpn13-204;Ptpn13-201;Ptpn13-205,Ptpn13;Ptpn13;Ptpn13,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,19249,ENSMUSG00000034573,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11925,cg08923259,0.0000128,0.00000546,2.337524232,0.020048027,gain,ns,-0.000002,0.00000927,-0.21624264,0.828940841,neg,ns,0.000721181,0.002716123,0.265518599,0.790786468,pos,ns,0.101940771,0.00000649,0.0000934,0.069459353,0.944668769,pos,ns,0.929525231,Gm13626,Gm13626_Intergenic_downstream,2,61686061,61686110,61686061,61686062,50,-,CGTGTACACGAGCACTCGCTCTGTGTGCACTGAATAGGATCACGATCCGG,Distal Intergenic,2,61706893,61707591,699,2,Gm13626-201,21530,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,8,,NA,mapped to different genes,2,61686048,61686109,62,*,62,9,0.629032258,1.468421053,0.14516129,1.18E-08,CpGisland,TRUE,U15,NS
23141,cg24178941,0.0000551,0.0000147,3.744836486,0.000215161,gain,ns,0.0000054,0.000025,0.216202129,0.82897239,pos,ns,0.018001885,0.007323222,2.458191691,0.014510596,pos,ns,1.83831475,-0.000434185,0.000251845,-1.724017677,0.085701585,neg,ns,0.733064452,Rnf220,Rnf220_Intron,4,117322284,117322333,117322332,117322333,50,+,CGTCCTGAGCCCCTAAATCAGGAACCAAGATGGGCTATTGTCACTTACCG,"Intron (Rnf220-201/Rnf220, intron 2 of 14)",4,117271463,117497052,225590,2,Rnf220-201,174719,Rnf220-201;Rnf220-202;Rnf220-207,Rnf220;Rnf220;Rnf220,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13259,cg27351554,-0.0000183,0.00000632,-2.896836123,0.00403772,loss,ns,-0.00000232,0.0000107,-0.216115505,0.829039851,neg,ns,-0.003718695,0.003147535,-1.181462634,0.238324546,neg,ns,0.622831225,-0.0000837,0.000108243,-0.773642604,0.439731723,neg,ns,0.049648503,Eif5a,Eif5a_fiveUTR,11,69921298,69921347,69921298,69921299,50,-,CGCAGGCGCCGACTCCCCACTGACCAACCAAGCAGCCCTATGACAGCCGC,Promoter (<=1kb),11,69916720,69921386,4667,2,Eif5a-201,39,Eif5a-213;Eif5a-207;Eif5a-208;Eif5a-209;Eif5a-201;Eif5a-202;Eif5a-210;Eif5a-203;Eif5a-206;Eif5a-205;Eif5a-204;Eif5a-212;Eif5a-211;Gps2-202;Gps2-203;Gps2-201;Gps2-205,Eif5a;Eif5a;Eif5a;Eif5a;Eif5a;Eif5a;Eif5a;Eif5a;Eif5a;Eif5a;Eif5a;Eif5a;Eif5a;Gps2;Gps2;Gps2;Gps2,0;0;0;0;0;0;0;0;0;0;0;-2994;0;7410;7248;7106;5257,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,5,276770,ENSMUSG00000078812,conserved gene and region,11,69920805,69921519,715,*,715,93,0.721678322,1.102315866,0.13006993,1.81E-82,CpGisland,TRUE,U1,Pr-A
21388,cg02551260,-0.0000186,0.0000108,-1.710780498,0.088122033,loss,ns,-0.00000398,0.0000184,-0.216086058,0.829062783,neg,ns,-0.00544309,0.005399721,-1.008031764,0.31422537,neg,ns,0.502758754,-0.000213204,0.000185696,-1.148137446,0.251797033,neg,ns,0.16377954,Psmd7,Psmd7_Intergenic_upstream,8,107603376,107603425,107603376,107603377,50,+,CGGATATTTTAAATGCCATTACCTAATAGAAGGAATGTTTTAAGCACCTT,Distal Intergenic,8,107580381,107588464,8084,2,Psmd7-201,-14912,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,3,17463,ENSMUSG00000039067,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6721,cg23792737,-0.00000422,0.00000133,-3.187159479,0.00158332,loss,ns,0.000000486,0.00000225,0.216054359,0.82908747,pos,ns,0.0000518,0.000659653,0.078531565,0.937455889,pos,ns,0.028049159,-0.0000195,0.0000227,-0.860891333,0.389963246,neg,ns,0.04042623,Pcdh1,Pcdh1_threeUTR,18,38185941,38185990,38185989,38185990,50,-,CTCGGGAATAATTACACGGGTCTTTCATTGACAGCTCAGCAAACAAACCG,3' UTR,18,38185914,38212053,26140,2,Pcdh1-203,26063,Pcdh1-203;Pcdh1-204,Pcdh1;Pcdh1,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,10,17,75599,ENSMUSG00000051375,conserved gene but different region,18,38185887,38186045,159,*,159,14,0.566037736,1.156363636,0.088050315,3.20E-10,CpGisland,TRUE,U1,Pr-A
2452,cg10570203,-0.0000738,0.0000123,-5.9860074,5.94E-09,loss,yes,-0.00000452,0.0000209,-0.216028059,0.829107952,neg,ns,-0.013011893,0.006136092,-2.120550633,0.034753469,neg,ns,1.459001842,-0.000120752,0.00021102,-0.57223234,0.567579316,neg,ns,0.804784411,Gm12026,Gm12026_Intergenic_downstream,11,19530710,19530759,19530758,19530759,50,-,TATCAATCAGAGCACAAGACAGAAAATTACTTTATTACAGCTACAGCTCG,Distal Intergenic,11,19383685,19384708,1024,1,Gm12026-201,147074,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,4,635455,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12708,cg11700371,-0.00000906,0.00000511,-1.774223255,0.077007693,loss,ns,-0.00000187,0.00000868,-0.216024878,0.82911043,neg,ns,-0.008690986,0.002542728,-3.417977441,0.000715174,neg,ns,3.145588105,0.00010266,0.0000874,1.174001831,0.241295415,pos,ns,0.827610719,Gm43516,Gm43516_Intergenic_upstream,3,66935342,66935391,66935390,66935391,50,+,CAGGCTCCTAATCAGGTCTTGAGACCTAGCCTGCCCTCTCTTTAAACCCG,Distal Intergenic,3,66953541,66953862,322,1,Gm43516-201,-18150,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,11,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18030,cg04304345,-0.00000633,0.00000536,-1.181673369,0.238241011,loss,ns,0.00000197,0.0000091,0.215920929,0.829191386,pos,ns,-0.00343492,0.00266626,-1.288291641,0.198605179,neg,ns,0.70200943,-0.0000104,0.0000917,-0.113573013,0.909649797,neg,ns,0.889033405,Pola1,Pola1_Intron,X,93345904,93345953,93345952,93345953,50,+,CTTTAATATATTCCATTTCAATTTCAAATCACCGTAAGCCAAGAGTGACG,"Intron (Pola1-201/Pola1, intron 36 of 36)",20,93304767,93632155,327389,2,Pola1-201,286202,Pola1-201,Pola1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,59,62,18968,ENSMUSG00000006678,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4164,cg27038395,-0.0000105,0.0000039,-2.688131209,0.007573598,loss,ns,-0.00000143,0.00000663,-0.215916066,0.829195173,neg,ns,-0.006436118,0.001943419,-3.311750336,0.001036719,neg,ns,2.984339033,0.000278678,0.0000668,4.169710132,0.0000396,pos,ns,0.63735075,Itpr3,Itpr3_Exon,17,27107648,27107697,27107648,27107649,50,-,CGTGGACACGGAGGTGGAGATGAAGGAGATCTACACCAGCAACCACATCT,"Exon (Itpr3-201/Itpr3, exon 32 of 58)",17,27057304,27122223,64920,1,Itpr3-201,50344,Itpr3-201;Itpr3-202,Itpr3;Itpr3,0;1471,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,Exon,5,5,16440,ENSMUSG00000042644,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14289,cg18640545,0.000000987,0.0000042,0.235059745,0.814317555,gain,ns,-0.00000154,0.00000714,-0.215740815,0.829331664,neg,ns,-0.001332284,0.002090591,-0.637276143,0.52441535,neg,ns,0.280324605,0.0000247,0.0000719,0.342946579,0.731871085,pos,ns,0.916487153,Rps6-ps4,Rps6-ps4_Intergenic_downstream,2,75073959,75074008,75073959,75073960,50,+,CGACAAGCTAATGCAATAAGGCCAATAATAAAAGGTTGTGTATTAGGCCT,Distal Intergenic,2,75191073,75191822,750,2,Rps6-ps4-201,117814,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,4,105244208,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26986,cg13349948,0.0000582,0.0000139,4.179828933,0.000038,gain,ns,-0.0000051,0.0000236,-0.215651787,0.829401003,neg,ns,-0.005066388,0.006928266,-0.731263454,0.465170625,neg,ns,0.332387718,-0.000149946,0.000238262,-0.629330963,0.529595906,neg,ns,0.712597991,Lhx4,Lhx4_Promoter,1,155751800,155751849,155751800,155751801,50,-,CGCCTCAGAGAAAATTAAATTGCACTTGAGGGCAAATTCTATTAGGGAAT,Promoter (<=1kb),1,155704625,155751684,47060,2,Lhx4-202,-165,Lhx4-202,Lhx4,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,7,16872,ENSMUSG00000026468,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
12165,cg00965692,0.00000653,0.00000197,3.313019024,0.001032189,gain,ns,-0.000000722,0.00000335,-0.215639656,0.829410452,neg,ns,-0.001713315,0.000981288,-1.745986023,0.081803996,neg,ns,1.087225482,0.0000826,0.0000337,2.447276982,0.014948739,pos,ns,0.956594148,Map2k5,Map2k5_Intron,9,63182403,63182452,63182451,63182452,50,-,TACTTCTAATCCTCAACAGGTTTTGGGGGCTCTTAAAATTATTGAAACCG,"Intron (Map2k5-201/Map2k5, intron 21 of 21)",9,63163768,63377902,214135,2,Map2k5-201,195450,Map2k5-201,Map2k5,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,34,37,23938,ENSMUSG00000058444,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14199,cg23009891,0.0000649,0.00000552,11.77405295,1.06E-26,gain,yes,-0.00000202,0.00000937,-0.215615184,0.829429512,neg,ns,0.007593335,0.002745232,2.766008806,0.006015134,pos,ns,2.220754729,0.0000385,0.0000944,0.408121683,0.683466081,pos,ns,0.099288834,Hoxd3,Hoxd3_Exon,2,74753160,74753209,74753208,74753209,50,-,AGAGGTTAGTTCTATTAAGAGTTCATCAATCACCCGGTGTGCACTTTTCG,"Exon (Haglr-203/Haglr-203, exon 1 of 4)",2,74745722,74748442,2721,1,Hoxd3-206,7487,Hoxd3-203;Hoxd3-206,Hoxd3;Hoxd3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,24,15434,ENSMUSG00000079277,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
3652,cg22499924,0.00000876,0.00000399,2.195461562,0.028871408,gain,ns,0.00000146,0.00000678,0.215564879,0.829468694,pos,ns,-0.001905724,0.001985288,-0.959923374,0.33784187,neg,ns,0.471286528,0.0000815,0.0000683,1.193803492,0.23346758,pos,ns,0.062512998,Erfl,Erfl_Promoter,7,24949033,24949082,24949033,24949034,50,+,CGGCCTTCAGCTTCGATTAGGGGAGATGGGACATGACAGGTGCGATCAAT,Promoter (4-5kb),7,24927445,24944494,17050,2,Erfl-201,-4539,Erfl-201,Erfl,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,29,36,,NA,mapped to different genes,7,24948874,24949205,332,*,332,30,0.545180723,1.304006284,0.090361446,9.36E-22,CpGisland,TRUE,U13,Hc-P
18379,cg20250885,0.00000126,0.00000214,0.590510252,0.555278849,gain,ns,0.000000783,0.00000363,0.215564695,0.829468836,pos,ns,-0.0000514,0.001064348,-0.048322239,0.961490548,neg,ns,0.017054981,0.0000516,0.0000366,1.40983025,0.159592281,pos,ns,0.942153444,Pi4kb,Pi4kb_Exon,3,94984647,94984696,94984695,94984696,50,+,GCCCTGTTGCTTGGGGCCTATTCTTCAGACATGCACATTTCCACTCAACG,"Exon (Pi4kb-201/Pi4kb, exon 2 of 11)",3,94974731,95006843,32113,1,Pi4kb-201,9916,Pi4kb-201;Pi4kb-207;Pi4kb-202;Pi4kb-203;Pi4kb-206,Pi4kb;Pi4kb;Pi4kb;Pi4kb;Pi4kb,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,107650,ENSMUSG00000038861,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14082,cg20612908,0.000026,0.0000104,2.492882711,0.013192621,gain,ns,0.00000381,0.0000177,0.215472144,0.829540923,pos,ns,-0.011424337,0.005185743,-2.20302801,0.028328205,neg,ns,1.547780943,0.000529167,0.000178337,2.967223282,0.003238918,pos,ns,0.413413889,Evx2,Evx2_Intergenic_downstream,2,74651853,74651902,74651901,74651902,50,-,ACCGAAAACCAGGGTGATACATCACCAGTCCAAATGTGCTGCTATAATCG,Distal Intergenic,2,74655616,74659419,3804,2,Evx2-202,7566,Evx2-201;Evx2-202,Evx2;Evx2,0;7517,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,35,14029,ENSMUSG00000001815,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
2317,cg15978039,0.000132189,0.0000158,8.36874993,2.02E-15,gain,yes,0.00000578,0.0000268,0.215314808,0.829663472,pos,ns,-0.014088179,0.00786162,-1.792019925,0.074104892,neg,ns,1.13015312,0.001126156,0.00027036,4.165389006,0.0000403,pos,ns,0.785809168,Meis1,Meis1_Exon,11,19014252,19014301,19014300,19014301,50,+,GTTTGGCGAACACGGCTATATCTTCATTGAATGACTCTGACGAGCAGACG,"Exon (Meis1-206/Meis1, exon 3 of 10)",11,18879817,19018985,139169,2,Meis1-206,4684,Meis1-206;Meis1-202;Meis1-209;Meis1-201;Meis1-203;Meis1-208;Meis1-207;Meis1-204;Meis1-205,Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,21,88,17268,ENSMUSG00000020160,mapped to different genes,11,19014258,19014327,70,*,70,9,0.628571429,1.448275862,0.128571429,3.78E-08,CpGisland,TRUE,NA,NRS
2599,cg26203162,0.0000377,0.00000934,4.033590115,0.0000692,gain,ns,-0.00000341,0.0000159,-0.215295277,0.829678686,neg,ns,-0.004079155,0.004646154,-0.877963815,0.380643295,neg,ns,0.419481816,0.0000836,0.000159781,0.522943592,0.601387065,pos,ns,0.778172282,Il17a,Il17a_Exon,1,20682807,20682856,20682807,20682808,50,-,CGGAACCAAGTCCGTCTTCCTGAGAGGTTTGGTCCCCTTCAACCAGCTAC,"Exon (Gm28653-202/Gm28653-202, exon 3 of 3)",1,20730905,20734496,3592,1,Il17a-201,-48098,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,16171,ENSMUSG00000025929,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8819,cg16819745,0.0000023,0.00000112,2.053119728,0.040899875,gain,ns,-0.00000041,0.00000191,-0.215237604,0.829723609,neg,ns,0.002016552,0.000558509,3.610599372,0.00035615,pos,ns,3.448366683,-0.0000544,0.0000192,-2.831758879,0.004932102,neg,ns,0.971136034,Clint1,Clint1_Exon,11,45886512,45886561,45886512,45886513,50,+,CGATCCCTGGAAAATTACCACTTTGTAGGTAAGCAATAGAAAAACCTTAT,"Exon (Clint1-201/Clint1, exon 4 of 12)",11,45851964,45910625,58662,1,Clint1-201,34548,Clint1-201;Clint1-202;Clint1-203,Clint1;Clint1;Clint1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,7,216705,ENSMUSG00000006169,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13110,cg20052563,-0.0000558,0.0000104,-5.3745195,0.000000151,loss,yes,-0.00000379,0.0000176,-0.215185716,0.829764026,neg,ns,-0.013418489,0.005164805,-2.598063002,0.009822802,neg,ns,2.007764621,0.00022561,0.000177617,1.270201359,0.204965442,pos,ns,0.792612157,Tcf4,Tcf4_Intron,18,69500246,69500295,69500246,69500247,50,-,CGGCTCCTGGCATTCTGATGGCTAATTATGCATCGGAGAGCTTCGACAGC,"Intron (Tcf4-259/Tcf4, intron 5 of 6)",18,69343356,69564082,220727,1,Tcf4-259,156890,Tcf4-259;Tcf4-201;Tcf4-207;Tcf4-210;Tcf4-240;Tcf4-254;Tcf4-246;Tcf4-206;Tcf4-202;Tcf4-257;Tcf4-232;Tcf4-248;Tcf4-231;Tcf4-205;Tcf4-253;Tcf4-233;Tcf4-238;Tcf4-245;Tcf4-249;Tcf4-219;Tcf4-235;Tcf4-227;Tcf4-250;Tcf4-229;Tcf4-260;Tcf4-226;Tcf4-216;Tcf4-256,Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,42,66,21413,ENSMUSG00000053477,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26427,cg18065257,0.0000478,0.0000166,2.8712966,0.004369421,gain,ns,0.00000608,0.0000283,0.215174228,0.829772974,pos,ns,0.040827626,0.008277611,4.93229566,0.00000133,pos,ns,5.876896782,-0.001234025,0.000284666,-4.334985479,0.0000197,neg,ns,0.716821337,Mfn2,Mfn2_Exon,4,147890225,147890274,147890273,147890274,50,+,AACTTTGTCCCAGAGCATGGCATTGATCACGGTGCTCTTCCCATTGCTCG,"Exon (Mfn2-204/Mfn2, exon 5 of 19)",4,147873599,147904687,31089,2,Mfn2-204,14413,Gm13156-201;Mfn2-204;Mfn2-201;Mfn2-203;Mfn2-202;Mfn2-205;Mfn2-206;Mfn2-207,Gm13156;Mfn2;Mfn2;Mfn2;Mfn2;Mfn2;Mfn2;Mfn2,-3399;0;0;0;0;-2702;0;14384,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,170731,ENSMUSG00000029020,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20637,cg05199187,-0.0000121,0.00000374,-3.223999891,0.001398868,loss,ns,-0.00000137,0.00000636,-0.214857438,0.830019743,neg,ns,-0.002898646,0.001862234,-1.556542552,0.120599419,neg,ns,0.918654784,0.0000116,0.000064,0.180507905,0.856871795,pos,ns,0.896630302,Pou4f1,Pou4f1_Intergenic_downstream,14,104208544,104208593,104208544,104208545,50,-,CGCAGCTGGCTGGAGCCAGTTTATGTATCCAGTCTCTCAAGACTACTTCC,Distal Intergenic,14,104463973,104465365,1393,2,Pou4f1-202,256821,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,31,18996,ENSMUSG00000048349,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5588,cg16403776,0.00001,0.00000673,1.484967868,0.138568475,gain,ns,-0.00000246,0.0000114,-0.214854079,0.83002236,neg,ns,0.006133505,0.003352044,1.82978088,0.068242941,pos,ns,1.165942264,-0.000104538,0.000115276,-0.906842015,0.365194692,neg,ns,0.841967942,Pbx3,Pbx3_Exon,2,34287732,34287781,34287732,34287733,50,-,CGACCTTAAGAAAAGTTCAGCCTTTGATCAAGGTTTAGTGTTCCTGGAGT,"Exon (C79798-201/C79798-201, exon 1 of 2)",2,34171457,34372038,200582,2,Pbx3-202,84257,Pbx3-202;Pbx3-201;Pbx3-210;Pbx3-206;Pbx3-207;Pbx3-209;Pbx3-204;Pbx3-205;Pbx3-203,Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,82,18516,ENSMUSG00000038718,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16413,cg24537323,-0.0000353,0.00000678,-5.197016124,0.000000368,loss,yes,0.00000247,0.0000115,0.214723854,0.830123806,pos,ns,-0.0112069,0.003376498,-3.31908979,0.001010768,neg,ns,2.995348619,0.000347461,0.000116117,2.99232432,0.002991022,pos,ns,0.874793598,Arel1,Arel1_Exon,12,84941753,84941802,84941801,84941802,50,-,TGGCCCACCTCATAGGGGTCCTTCCAATCCCAGGAGACTTTGCAAGACCG,"Exon (Arel1-202/Arel1, exon 4 of 19)",12,84918148,84970824,52677,2,Arel1-202,29022,Arel1-202;Arel1-201;Arel1-203;Arel1-208;Arel1-204;Arel1-206;Arel1-205,Arel1;Arel1;Arel1;Arel1;Arel1;Arel1;Arel1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,68497,ENSMUSG00000042350,conserved gene and region,12,84941801,84941896,96,*,96,9,0.552083333,1.24137931,0.09375,0.000000648,CpGisland,TRUE,U10,Tr-S
3056,cg13406210,0.000022,0.00000556,3.953570045,0.0000954,gain,ns,0.00000203,0.00000945,0.21471373,0.830131693,pos,ns,0.004391546,0.002767313,1.586934757,0.11354686,pos,ns,0.94482487,-0.0000418,0.0000952,-0.439344646,0.660717921,neg,ns,0.038813312,Pou3f2,Pou3f2_Exon,4,22487816,22487865,22487864,22487865,50,+,AGGGCTTGATGTCCGGCTGGCCCAGGGGGCTGGTGGACCACGGGGAGCCG,Promoter (<=1kb),4,22482780,22488366,5587,2,Pou3f2-201,501,Pou3f2-201,Pou3f2,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,18,18992,ENSMUSG00000095139,conserved gene and region,4,22487763,22488174,412,*,412,49,0.735436893,0.881726066,0.118932039,1.63E-41,CpGisland,TRUE,U3,Pr-B
15741,cg03764859,-0.000000234,0.000000225,-1.039084767,0.299575076,loss,ns,8.22E-08,0.000000383,0.214683167,0.830155502,pos,ns,0.000235053,0.000112134,2.096174313,0.036877186,pos,ns,1.433242228,-0.00000959,0.00000386,-2.487186207,0.013401462,neg,ns,0.006374524,Pcgf1,Pcgf1_fiveUTR,6,83078414,83078463,83078414,83078415,50,+,CGATCGCGATGAGGCTTCGGAACCAGCTCCAGTCAGTGTACAAGATGGAC,Promoter (<=1kb),6,83077869,83078995,1127,1,Pcgf1-205,545,Pcgf1-205;Pcgf1-202;Pcgf1-201;Pcgf1-203;Pcgf1-207;Pcgf1-204;Pcgf1-208;Pcgf1-206,Pcgf1;Pcgf1;Pcgf1;Pcgf1;Pcgf1;Pcgf1;Pcgf1;Pcgf1,0;0;0;-167;-167;-228;-255;-1557,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,2,69837,ENSMUSG00000069678,conserved gene but different region,6,83077792,83078793,1002,*,1002,93,0.661676647,0.8567252,0.092814371,2.66E-67,CpGisland,TRUE,U1,Pr-A
26916,cg23252695,0.0000697,0.0000112,6.240762347,1.43E-09,gain,yes,-0.00000407,0.000019,-0.214539419,0.830267487,neg,ns,0.005976969,0.005558661,1.075253441,0.283097431,pos,ns,0.548064072,-0.000244893,0.000191162,-1.281074278,0.201125086,neg,ns,0.073844219,Prdm16,Prdm16_fiveUTR,4,154636711,154636760,154636711,154636712,50,-,CGGGAGACTTACTTTTGGCTAGCTTCCTCGCCCTCGCCTTGGATCGCATG,Promoter (<=1kb),4,154316125,154636866,320742,2,Prdm16-201,106,Prdm16-201;Prdm16-202;Prdm16-203;Prdm16-204;Prdm16-205;Prdm16-206;Prdm16-210;Prdm16-207;Prdm16-212,Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16,0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,32,70673,ENSMUSG00000039410,conserved gene but different region,4,154635135,154636773,1639,*,1639,193,0.718730934,0.913086651,0.117754729,8.49E-161,CpGisland,TRUE,U3,Pr-B
12141,cg26929453,-0.00000408,0.00000389,-1.04838004,0.295280209,loss,ns,0.00000142,0.00000661,0.214372694,0.830397375,pos,ns,-0.000397819,0.001935231,-0.205566585,0.837264405,neg,ns,0.077137372,-0.0000316,0.0000666,-0.474330477,0.635598197,neg,ns,0.92368358,Ino80d,Ino80d_fiveUTR,1,63093417,63093466,63093417,63093418,50,+,CGCCTCTGCTTGCACAGTTTGGGGCTATATGAGCACAAGGGCTTATTGTC,5' UTR,1,63047801,63114267,66467,2,Ino80d-205,20801,Ino80d-202;Ino80d-205;Ino80d-206;Ino80d-201;Ino80d-203;Ino80d-204,Ino80d;Ino80d;Ino80d;Ino80d;Ino80d;Ino80d,0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,9,12,227195,ENSMUSG00000040865,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2476,cg07396115,-0.0000166,0.00000835,-1.986228022,0.047888384,loss,ns,0.00000304,0.0000142,0.214139976,0.830578685,pos,ns,-0.000180428,0.004153601,-0.043438874,0.965379656,neg,ns,0.015301858,-0.0000429,0.000142842,-0.300167421,0.764250639,neg,ns,0.131690344,Slc35d3,Slc35d3_Exon,10,19850649,19850698,19850697,19850698,50,+,TTCTTGAGCACCAGGACGCCGATGAGCATGGTGACCAGGGGCAGGCAGCG,Promoter (<=1kb),10,19847916,19851459,3544,2,Slc35d3-201,761,Pex7-201;Slc35d3-201,Pex7;Slc35d3,56991;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,76157,ENSMUSG00000050473,conserved gene and region,10,19850510,19850870,361,*,361,34,0.689750693,0.806015235,0.094182826,3.19E-25,CpGisland,TRUE,U3,Pr-B
4353,cg10089663,-0.0000827,0.0000112,-7.355865741,1.71E-12,loss,yes,-0.00000409,0.0000191,-0.21408248,0.830623481,neg,ns,-0.011506242,0.005596248,-2.056063807,0.040613369,neg,ns,1.391330979,0.000163083,0.000192454,0.847386084,0.397433697,pos,ns,0.804004819,Shh,Shh_Promoter,5,28477056,28477105,28477056,28477057,50,+,CGTAATTAGGCAAATCAAATAAGGCACGGCAACAGCTTTCAAATATTTAG,Promoter (9-10kb),5,28456815,28467256,10442,2,Shh-201,-9800,NA,NA,NA,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,1,2,20423,ENSMUSG00000002633,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2522,cg20683133,-0.00000772,0.00000777,-0.993675494,0.321155852,loss,ns,0.00000283,0.0000132,0.214070357,0.830632927,pos,ns,0.003561285,0.003868488,0.920588359,0.357981205,pos,ns,0.446139774,-0.000215774,0.000133037,-1.62190735,0.105839752,neg,ns,0.787140214,Map7,Map7_Exon,10,20250333,20250382,20250381,20250382,50,+,GTTGGCTGTCAATTAGCATTATCTCCATTTGTTTTAGATCCAGACAGGCG,"Exon (Map7-201/Map7, exon 6 of 18)",10,20148471,20281522,133052,1,Map7-201,101862,Map7-201;Map7-202;Map7-206;Map7-208;Map7-209;Map7-204;Map7-203,Map7;Map7;Map7;Map7;Map7;Map7;Map7,0;0;0;79311;78627;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,17761,ENSMUSG00000019996,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10372,cg25184464,0.0000411,0.0000191,2.150647343,0.032276915,gain,ns,0.00000694,0.0000325,0.213932588,0.830740267,pos,ns,0.002682051,0.0095087,0.282062879,0.778083509,pos,ns,0.108973789,0.000328367,0.000327003,1.004170419,0.316079643,pos,ns,0.598202412,Npas3,Npas3_Intron,12,53255134,53255183,53255134,53255135,50,+,CGTTCTTTATCACCTGTCTCCATTTGGCATTCGAAGAAGGTAAATCAAAG,"Intron (Npas3-204/Npas3, intron 1 of 10)",12,53248157,54069532,821376,1,Npas3-204,6977,Npas3-204;Npas3-201;Npas3-202;Npas3-203,Npas3;Npas3;Npas3;Npas3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,83,103,27386,ENSMUSG00000021010,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
1165,cg16734287,0.0000149,0.00000382,3.905002711,0.000115672,gain,ns,-0.00000139,0.00000649,-0.213847767,0.830806356,neg,ns,0.003953502,0.001901316,2.079350217,0.038406892,pos,ns,1.415590834,-0.0000397,0.0000654,-0.606844806,0.544398088,neg,ns,0.064874563,Shisa9,Shisa9_Exon,16,11984855,11984904,11984855,11984856,50,+,CGGGCGACTTCATCTTCTGCTGCGGGACTTGTGGCTTCCGGTTCTGCTGC,Promoter (<=1kb),16,11984113,11995390,11278,1,Shisa9-204,742,Shisa9-204;Shisa9-206;Shisa9-202;Shisa9-201;Shisa9-203;Shisa9-205,Shisa9;Shisa9;Shisa9;Shisa9;Shisa9;Shisa9,0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,72555,ENSMUSG00000022494,conserved gene and region,16,11984126,11985055,930,*,930,108,0.701075269,0.95067723,0.116129032,1.48E-89,CpGisland,TRUE,U3,Pr-B
23738,cg08606767,0.00010687,0.0000126,8.503906549,7.89E-16,gain,yes,0.00000457,0.0000213,0.213835536,0.830815886,pos,ns,0.010158917,0.006254818,1.624174796,0.105354817,pos,ns,0.977345604,-0.000178594,0.000215103,-0.830271262,0.407024377,neg,ns,0.547052762,Foxo6,Foxo6_Intergenic_downstream,4,120253900,120253949,120253900,120253901,50,+,CGACTGTTACAATCAAATTGTCCACAGACAATTAGCAGAGTGGGAGAAAT,Distal Intergenic,4,120267079,120287349,20271,2,Foxo6-201,33400,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,42,329934,ENSMUSG00000052135,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14717,cg17149006,0.0000129,0.00000899,1.43340441,0.152750078,gain,ns,-0.00000326,0.0000153,-0.213775956,0.830862309,neg,ns,0.007593052,0.004474174,1.69708447,0.090684383,pos,ns,1.042467499,-0.000324529,0.000153866,-2.109162416,0.035732206,neg,ns,0.778688647,Rnf165,Rnf165_threeUTR,18,77458271,77458320,77458271,77458272,50,-,CGTATGGAATGTATCCAAAGAGGCCAGCACCACGGTAGGACAGCTTGCAA,3' UTR,18,77456110,77565136,109027,2,Rnf165-201,106816,Rnf165-201;Rnf165-202;Rnf165-207,Rnf165;Rnf165;Rnf165,0;0;8828,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,10,21,225743,ENSMUSG00000025427,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20262,cg19298599,0.0000627,0.00000574,10.94011112,8.97E-24,gain,yes,0.00000208,0.00000974,0.213694249,0.830925973,pos,ns,0.008400168,0.002854578,2.942700769,0.003499131,pos,ns,2.45603977,-0.000202237,0.0000982,-2.060093775,0.040223962,neg,ns,0.087574284,Hoxc5,Hoxc5_Exon,15,102973393,102973442,102973441,102973442,50,+,TTTTGAACTCGGCAACAAGAAACTGCCTGAGTTACATCAGTCGGTTTTCG,"Exon (Mir196a-2-201/Mir196a-2-201, exon 1 of 1)",15,102967443,103015676,48234,1,Hoxc5-202,5950,Hoxc10-201;Hoxc5-202;Hoxc9-202;Hoxc9-201,Hoxc10;Hoxc5;Hoxc9;Hoxc9,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,72,134,15424,ENSMUSG00000022485,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
1568,cg23835585,0.000117892,0.000013,9.089382036,1.22E-17,gain,yes,0.00000471,0.000022,0.21364154,0.830967044,pos,ns,0.01297475,0.006455471,2.009884205,0.045309576,pos,ns,1.34381,-0.00021307,0.000222003,-0.959762554,0.337922691,neg,ns,0.100562653,Runx1t1,Runx1t1_Promoter,4,13743329,13743378,13743329,13743330,50,+,CGCCTGTGACAGTGGCAATTCCCTGCGCCCCACATCACATTTGTCTGCCA,Promoter (<=1kb),4,13743436,13893649,150214,1,Runx1t1-201,-58,Runx1t1-201,Runx1t1,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,24,12395,ENSMUSG00000006586,conserved gene but different region,4,13742963,13743355,393,*,393,51,0.737913486,0.971781818,0.129770992,2.14E-45,CpGisland,TRUE,U3,Pr-B
12143,cg25961603,-0.00000362,0.00000124,-2.91294006,0.003840546,loss,ns,-0.000000451,0.00000211,-0.213587931,0.831008816,neg,ns,-0.000706953,0.000619073,-1.141953477,0.254354637,neg,ns,0.594560341,0.00000613,0.0000213,0.288073331,0.773483109,pos,ns,0.035582979,Ino80d,Ino80d_fiveUTR,1,63114592,63114641,63114592,63114593,50,+,CGGTGATTATTAAGGGGAAATCCCTGAATATACTCTCCAGCCAAGAAGGC,Promoter (<=1kb),1,63047801,63114667,66867,2,Ino80d-201,26,Ino80d-205;Ino80d-206;Ino80d-201;Ino80d-203;Ino80d-204,Ino80d;Ino80d;Ino80d;Ino80d;Ino80d,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,9,12,227195,ENSMUSG00000040865,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
16719,cg06563630,-0.00000123,0.00000876,-0.140270343,0.888537491,loss,ns,-0.00000318,0.0000149,-0.213575776,0.831018288,neg,ns,-0.003162204,0.004362229,-0.724905578,0.469056757,neg,ns,0.328774604,0.0000281,0.000150017,0.187459623,0.851422914,pos,ns,0.832601094,Adamtsl1,Adamtsl1_Exon,4,86247946,86247995,86247994,86247995,50,-,CTGATGACTCCCCTTGCTTCTGTAGGTGGGAGGCCACCCCATGGACCGCG,"Exon (Adamtsl1-203/Adamtsl1, exon 10 of 28)",4,86053915,86428382,374468,1,Adamtsl1-203,194031,Adamtsl1-203;Adamtsl1-201;Adamtsl1-209;Adamtsl1-207,Adamtsl1;Adamtsl1;Adamtsl1;Adamtsl1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,10,77739,ENSMUSG00000066113,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27086,cg23269439,-0.0000139,0.00000877,-1.581262942,0.114837643,loss,ns,-0.00000318,0.0000149,-0.213460312,0.831108259,neg,ns,-0.003453021,0.004367352,-0.790644079,0.429756152,neg,ns,0.366777898,-0.0000653,0.000150193,-0.434757395,0.664041017,neg,ns,0.865925171,Cnksr2,Cnksr2_Exon,X,157919797,157919846,157919845,157919846,50,+,GGTAAGCATGCTCTGAGGTCGCTTTTTCAAAGTTAAGATAACACCACTCG,"Exon (Cnksr2-201/Cnksr2, exon 9 of 22)",20,157821436,158043294,221859,2,Cnksr2-201,123448,Cnksr2-201;Cnksr2-202,Cnksr2;Cnksr2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,11,245684,ENSMUSG00000025658,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25762,cg21089557,-0.00000261,0.00000184,-1.413422593,0.158534844,loss,ns,-0.000000669,0.00000313,-0.213455251,0.831112203,neg,ns,-0.002017568,0.000918241,-2.197208639,0.028745189,neg,ns,1.541434824,0.0000569,0.0000316,1.803397678,0.072296615,pos,ns,0.052098676,Uncx,Uncx_Promoter,5,139536526,139536575,139536574,139536575,50,-,TAATTAGCCACAGATCCTACAAACAGGATAACAGATTTAATTAAGCAGCG,Promoter (6-7kb),5,139543494,139548179,4686,1,Uncx-201,-6968,NA,NA,NA,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,22,88,22255,ENSMUSG00000029546,conserved gene and region,5,139536349,139536575,227,*,227,17,0.537444934,1.039601293,0.074889868,3.67E-11,CpGisland,TRUE,U13,Hc-P
12343,cg10901415,-0.00000173,0.00000157,-1.098649013,0.272773726,loss,ns,-0.00000057,0.00000267,-0.213418825,0.831140587,neg,ns,0.000530563,0.00078241,0.678114366,0.498205023,pos,ns,0.302591898,-0.00000203,0.0000269,-0.075462632,0.939895302,neg,ns,0.966607927,Fign,Fign_threeUTR,2,63979534,63979583,63979582,63979583,50,-,GTATTCTTCAGTTGCTCGTCCACAGAGTGGTTGGATGAGGTAGCTGCACG,3' UTR,2,63971507,64098012,126506,2,Fign-203,118429,Fign-203;Fign-201;Fign-202;Fign-204,Fign;Fign;Fign;Fign,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,14,84,60344,ENSMUSG00000075324,conserved gene but different region,2,63979550,63979657,108,*,108,9,0.601851852,0.958579882,0.083333333,0.00000176,CpGisland,TRUE,U10,Tr-S
17847,cg05540907,0.0000452,0.00000822,5.502622141,7.85E-08,gain,yes,-0.00000298,0.000014,-0.213350631,0.831193727,neg,ns,0.033994925,0.004091473,8.308725073,3.06E-15,pos,yes,14.51454309,-0.001090565,0.000140705,-7.750696028,1.32E-13,neg,yes,0.858511892,G3bp2,G3bp2_Exon,5,92073183,92073232,92073231,92073232,50,+,ATTCAGCAAAGTATAATATTGCCTCACAAACTCCCGCCCTACAAGCAGCG,"Exon (G3bp2-203/G3bp2, exon 2 of 11)",5,92052146,92083557,31412,2,G3bp2-203,10325,G3bp2-203;G3bp2-201;G3bp2-202;G3bp2-204;G3bp2-209;G3bp2-207;G3bp2-205;G3bp2-208,G3bp2;G3bp2;G3bp2;G3bp2;G3bp2;G3bp2;G3bp2;G3bp2,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,5,23881,ENSMUSG00000029405,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4388,cg00369613,0.00000146,0.00000233,0.627485346,0.530803049,gain,ns,0.000000845,0.00000396,0.21334955,0.831194569,pos,ns,-0.000655923,0.001160011,-0.565445139,0.57218004,neg,ns,0.242467297,-0.00000886,0.0000399,-0.222111955,0.824372986,neg,ns,0.898041164,Trappc12,Trappc12_Exon,12,28691446,28691495,28691446,28691447,50,+,CGCTCTCGTGCAGGTAGTGCCTGGGGTCCTGCTGGACCATGGCCTCCAGC,"Exon (Trappc12-202/Trappc12, exon 12 of 12)",12,28690628,28750472,59845,2,Trappc12-202,58977,Trappc12-202;Trappc12-201,Trappc12;Trappc12,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,217449,ENSMUSG00000020628,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12132,cg05533667,-0.000032,0.00000449,-7.124279107,7.36E-12,loss,yes,0.00000163,0.00000763,0.213344293,0.831198665,pos,ns,-0.004813193,0.002235308,-2.153256595,0.032069549,neg,ns,1.493907147,0.0000209,0.0000769,0.272501021,0.785418226,pos,ns,0.953471416,Zfp618,Zfp618_Intron,4,63075748,63075797,63075748,63075749,50,+,CGTGCTGAGAATATCCAAGGGCTCCACTGTACATTTAAATGGATATAATT,"Intron (Zfp618-201/Zfp618, intron 3 of 11)",4,62965573,63115748,150176,1,Zfp618-201,110175,Zfp618-201;Zfp618-203;Zfp618-202,Zfp618;Zfp618;Zfp618,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,12,72701,ENSMUSG00000028358,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15423,cg26358194,-0.00000406,0.00000404,-1.004474209,0.315933497,loss,ns,0.00000146,0.00000686,0.213308005,0.831226943,pos,ns,-0.001410371,0.002010828,-0.701387896,0.483587159,neg,ns,0.31552524,0.0000422,0.0000692,0.610469596,0.541998061,pos,ns,0.924496433,Tnrc6b,Tnrc6b_Exon,15,80878873,80878922,80878921,80878922,50,+,CCCTTGGAGGTGCTGCTGCTTCAAATTATGCAAATTCCACTTGGGGCTCG,"Exon (Tnrc6b-201/Tnrc6b, exon 8 of 25)",15,80711313,80941085,229773,1,Tnrc6b-201,167560,Tnrc6b-201;Tnrc6b-204;Tnrc6b-207;Tnrc6b-208;Tnrc6b-206,Tnrc6b;Tnrc6b;Tnrc6b;Tnrc6b;Tnrc6b,0;0;0;0;-3751,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,20,24,213988,ENSMUSG00000047888,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21208,cg09207838,0.0000124,0.00000264,4.710441724,0.00000374,gain,ns,0.000000956,0.00000448,0.213289435,0.831241414,pos,ns,-0.000550506,0.00131312,-0.419235363,0.675334482,neg,ns,0.170481075,0.0000137,0.0000452,0.302385342,0.762561111,pos,ns,0.861345693,Rad54l2,Rad54l2_fiveUTR,9,106754068,106754117,106754116,106754117,50,-,AGGCAGATTCGTCTGACATGGCTCCCAGAGGTCCTCAGTGGGCATTACCG,5' UTR,9,106688082,106789194,101113,2,Rad54l2-201,35077,Rad54l2-201,Rad54l2,0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,5,81000,ENSMUSG00000040661,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15136,cg20359134,-0.0000249,0.00000764,-3.266185501,0.001212197,loss,ns,0.00000277,0.000013,0.213252429,0.831270251,pos,ns,-0.00574693,0.003800912,-1.51198733,0.131555809,neg,ns,0.880889972,-0.0000662,0.000130713,-0.506169369,0.613097524,neg,ns,0.828016048,Gm48470,Gm48470_Intergenic_downstream,13,79346147,79346196,79346195,79346196,50,+,AAAATACAACAGTTCATCTGGCAGAAAGCAAATTAGCTTTGACCATAGCG,Distal Intergenic,13,79441143,79441407,265,2,Gm48470-201,95211,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,20,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11017,cg02537346,0.00000449,0.00000261,1.720867113,0.08627272,gain,ns,-0.000000945,0.00000444,-0.213107017,0.831383567,neg,ns,0.004095662,0.001299415,3.151926825,0.001780536,pos,ns,2.749449287,-0.000150781,0.0000447,-3.374169962,0.000834459,neg,ns,0.03370642,Cxcl14,Cxcl14_fiveUTR,13,56296445,56296494,56296445,56296446,50,-,CGAGCTCATTAATATGCAGAACCACTCGGTGACTCACTGAGATTTCTCAA,Promoter (<=1kb),13,56288643,56296551,7909,2,Cxcl14-201,57,Cxcl14-202;Cxcl14-201,Cxcl14;Cxcl14,-140;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,1,57266,ENSMUSG00000021508,mapped to different genes,13,56296071,56296472,402,*,402,45,0.7039801,0.903596404,0.111940299,7.60E-37,CpGisland,TRUE,NA,NRS
24316,cg16545804,-0.00000833,0.00000716,-1.163530989,0.245508911,loss,ns,-0.00000259,0.0000122,-0.213056992,0.831422551,neg,ns,-0.001694355,0.003561896,-0.475688988,0.634630996,neg,ns,0.19747872,0.0000379,0.000122493,0.309293981,0.757305689,pos,ns,0.901514149,Pou3f1,Pou3f1_Intron,4,124615830,124615879,124615830,124615831,50,+,CGCCATAAATTCACTGCACATTTTATTGTGTTGCTGGAAATTGTGCCTTC,"Intron (Gm2164-201/Gm2164-201, intron 1 of 1)",4,124656807,124660655,3849,1,Pou3f1-201,-40928,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,43,85,18991,ENSMUSG00000090125,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1330,cg05852043,0.00000249,0.00000241,1.033182723,0.302323735,gain,ns,-0.000000872,0.00000409,-0.213041342,0.831434746,neg,ns,0.000806183,0.001198885,0.67244402,0.501801962,pos,ns,0.299467645,-0.000022,0.0000412,-0.532958721,0.594444001,neg,ns,0.051312367,Fezf2,Fezf2_fiveUTR,14,12346793,12346842,12346793,12346794,50,-,CGGGTTTTGTGTTTTTCTAAAATAAAGAGAAGGATTATCAGAGAGGAGAG,5' UTR,14,12343388,12348189,4802,2,Fezf2-202,1347,Fezf2-203;Fezf2-201;Fezf2-202,Fezf2;Fezf2;Fezf2,0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,13,45,54713,ENSMUSG00000021743,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6573,cg18852579,0.0000299,0.00000496,6.020101502,4.92E-09,gain,yes,0.0000018,0.00000843,0.212945951,0.831509085,pos,ns,0.002930894,0.002471114,1.186061641,0.236506213,pos,ns,0.626157446,0.00000277,0.000085,0.032618885,0.973999501,pos,ns,0.05732152,Zfp536,Zfp536_Exon,7,37772985,37773034,37773033,37773034,50,+,CTCGGCCTCCCCCTATCTGGTAGGTGAAATGCATTGTACCATTAAAAACG,Promoter (<=1kb),7,37569629,37773641,204013,2,Zfp536-208,607,Zfp536-202;Zfp536-201;Zfp536-203;Zfp536-206;Zfp536-209;Zfp536-208;Zfp536-205;Zfp536-207;Zfp536-210,Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536,0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,13,112,243937,ENSMUSG00000043456,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
7285,cg10792727,-0.00000134,0.00000104,-1.285741082,0.199493031,loss,ns,-0.000000377,0.00000177,-0.212942606,0.831511692,neg,ns,0.0000684,0.000518843,0.131752547,0.895265489,pos,ns,0.048048156,-0.000000914,0.0000178,-0.051205487,0.959194758,neg,ns,0.03060239,Hivep1,Hivep1_Promoter,13,42052894,42052943,42052894,42052895,50,-,CGCTTTGTTCAGTGCAGCGTTGCAGAGGGGTTTTCCCAGGCTCCGCCCTC,Promoter (<=1kb),13,42052021,42185026,133006,1,Hivep1-201,873,Hivep1-201;Hivep1-202,Hivep1;Hivep1,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,4,6,110521,ENSMUSG00000021366,conserved gene but different region,13,42051650,42052938,1289,*,1289,159,0.759503491,0.855359587,0.123351435,2.78E-136,CpGisland,TRUE,U1,Pr-A
21289,cg07703497,-0.0000183,0.00000674,-2.709923237,0.007104425,loss,ns,-0.00000244,0.0000114,-0.212934226,0.831518223,neg,ns,-0.007079737,0.003352236,-2.111944254,0.035490971,neg,ns,1.449882118,-0.00000771,0.000115283,-0.066868078,0.946729831,neg,ns,0.844291428,Kcna2,Kcna2_Exon,3,107105211,107105260,107105211,107105212,50,-,CGTCTCCATGACAACTGTAGGCTATGGAGACATGGTTCCGACTACCATTG,"Exon (Kcna2-203/Kcna2, exon 3 of 3)",3,107101146,107107737,6592,1,Kcna2-203,4065,Kcna2-203;Kcna2-201;Kcna2-202,Kcna2;Kcna2;Kcna2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,4,16490,ENSMUSG00000040724,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
534,cg19043942,0.00000255,0.0000033,0.773043059,0.440085925,gain,ns,0.00000119,0.0000056,0.212799793,0.83162299,pos,ns,0.003224933,0.001640558,1.965754334,0.050219289,pos,ns,1.299129442,-0.000207841,0.0000564,-3.683908517,0.000270958,neg,ns,0.927869257,Celf2,Celf2_Intron,2,6855044,6855093,6855044,6855045,50,-,CGATCATCATTGGAAACCCAGCATTTTGACAAAGTGTTCAAACATCAGAG,"Intron (Celf2-201/Celf2, intron 3 of 15)",2,6539694,7396000,856307,2,Celf2-201,540907,Celf2-201;Celf2-204;Celf2-214;Celf2-206;Celf2-226;Celf2-223;Celf2-221;Celf2-225;Celf2-228;Celf2-217;Celf2-210;Celf2-209;Celf2-219;Celf2-207;Celf2-218;Celf2-203,Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,24,14007,ENSMUSG00000002107,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21580,cg09014464,0.0000861,0.0000139,6.211516852,1.69E-09,gain,yes,-0.00000501,0.0000235,-0.212757658,0.831655827,neg,ns,0.02803504,0.006896011,4.065399812,0.0000608,pos,ns,4.215764509,-0.000650074,0.000237153,-2.741155446,0.006477679,neg,ns,0.393627904,Zfhx3,Zfhx3_Intron,8,108436545,108436594,108436545,108436546,50,-,CGGATTGGGGTTGACACTTGAACGAAGGCGTTTGTCCAGTTAAAGGACAG,"Intron (Zfhx3-204/Zfhx3, intron 3 of 15)",8,107942644,108961630,1018987,1,Zfhx3-204,493901,Zfhx3-204,Zfhx3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,114,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23713,cg11276577,0.000044,0.00000657,6.705997341,9.48E-11,gain,yes,0.00000237,0.0000112,0.212694199,0.831705284,pos,ns,-0.001150571,0.003267826,-0.352090558,0.725009578,neg,ns,0.139656256,0.000179382,0.00011238,1.596207771,0.111461286,pos,ns,0.874690644,Hivep3,Hivep3_Exon,4,120122915,120122964,120122915,120122916,50,-,CGAGGGAAATATGTTTGTGAGGAGTGTGGAATTCGCTGCAAGAAGCCCAG,"Exon (Hivep3-202/Hivep3, exon 6 of 9)",4,119814495,120138045,323551,1,Hivep3-202,308420,Hivep3-202;Hivep3-209,Hivep3;Hivep3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,8,16656,ENSMUSG00000028634,conserved gene and region,4,120122884,120123003,120,*,120,9,0.533333333,1.071428571,0.075,0.0000042,CpGisland,TRUE,NA,NRS
25492,cg16961544,-0.00000851,0.00000892,-0.9536252,0.34101638,loss,ns,0.00000322,0.0000152,0.212511471,0.831847697,pos,ns,-0.000684937,0.004441761,-0.154203919,0.877549293,neg,ns,0.056728479,0.000104638,0.000152752,0.685017549,0.493844715,pos,ns,0.380831752,Nr5a2,Nr5a2_Intron,1,136915712,136915761,136915712,136915713,50,+,CGTTGAGGTTTTATTATTGGAACACAGGAAAACTTTATCATCATGCTGGG,"Intron (Nr5a2-201/Nr5a2, intron 6 of 8)",1,136842571,136960448,117878,2,Nr5a2-201,44687,Nr5a2-201;Nr5a2-202;Nr5a2-203;Nr5a2-205;Nr5a2-204,Nr5a2;Nr5a2;Nr5a2;Nr5a2;Nr5a2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,5,26424,ENSMUSG00000026398,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
25681,cg04196288,-0.0000126,0.00000325,-3.88309203,0.000126077,loss,ns,-0.00000117,0.00000551,-0.212399292,0.831935129,neg,ns,-0.001324812,0.001615573,-0.820026027,0.412831323,neg,ns,0.384227359,-0.0000274,0.0000556,-0.493177847,0.622236102,neg,ns,0.959503947,Lmo3,Lmo3_Intergenic_downstream,6,138323446,138323495,138323494,138323495,50,+,TTGTAAAGTATTGATCGCAATTTAATTTTGCAGTCCCAACATGAGAGGCG,Distal Intergenic,6,138364196,138421452,57257,2,Lmo3-207,97957,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,38,109593,ENSMUSG00000030226,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16445,cg13810425,0.000000586,0.0000017,0.34373338,0.731279824,gain,ns,0.000000615,0.00000289,0.212393955,0.831939288,pos,ns,-0.000442467,0.000848132,-0.521695818,0.602254664,neg,ns,0.220219828,0.0000294,0.0000292,1.00695024,0.314744007,pos,ns,0.951297797,Ric8b,Ric8b_Exon,10,85008772,85008821,85008772,85008773,50,+,CGGGAAGCTGAAACTCGTATAGGTAAATTCGAAGGGACTCTTGGGAGATC,"Exon (Ric8b-204/Ric8b, exon 1 of 3)",10,84917616,85016447,98832,1,Ric8b-201,91156,Ric8b-201;Ric8b-202;Ric8b-205;Ric8b-204,Ric8b;Ric8b;Ric8b;Ric8b,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,14,237422,ENSMUSG00000035620,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
3209,cg24580106,-0.00000116,0.000000762,-1.527537247,0.127647122,loss,ns,-0.000000275,0.0000013,-0.212357244,0.831967902,neg,ns,0.000379374,0.000379432,0.999845531,0.318165068,pos,ns,0.497347504,-0.0000388,0.000013,-2.973795066,0.003172259,neg,ns,0.010789854,Xpo1,Xpo1_Promoter,11,23255943,23255992,23255943,23255944,50,+,CGCTCCGCGGCGCCATGGGCTGAAAACTCAACCGAGATGGAATCTCCCAG,Promoter (<=1kb),11,23256041,23297597,41557,1,Xpo1-201,-49,Xpo1-201;Xpo1-204;Xpo1-203;Xpo1-206;Xpo1-202;Xpo1-205,Xpo1;Xpo1;Xpo1;Xpo1;Xpo1;Xpo1,0;0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,7,14,103573,ENSMUSG00000020290,conserved gene but different region,11,23255743,23256076,334,*,334,31,0.676646707,0.821746032,0.092814371,7.76E-23,CpGisland,TRUE,U2,Pr-W
2006,cg24975558,-0.000027,0.0000129,-2.083553911,0.038019685,loss,ns,-0.00000467,0.000022,-0.212298261,0.832013874,neg,ns,-0.007950968,0.00643834,-1.234940591,0.217787798,neg,ns,0.661966457,-0.00025427,0.000221414,-1.148393576,0.251691492,neg,ns,0.865154423,Prune2,Prune2_Intron,19,17039707,17039756,17039707,17039708,50,-,CGTGCATATTTTTGCAAAGATAAGGAGAGGCCATTAGGGATTTAATATAA,"Intron (Prune2-205/Prune2, intron 6 of 6)",19,16956118,17055782,99665,1,Prune2-205,83589,Prune2-205;Prune2-201,Prune2;Prune2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,8,353211,ENSMUSG00000039126,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1650,cg17542851,0.000120461,0.0000194,6.197628731,1.82E-09,gain,yes,0.000007,0.000033,0.212100262,0.832168202,pos,ns,-0.009561691,0.00967378,-0.988413028,0.323721247,neg,ns,0.489828795,0.000789815,0.000332681,2.374093834,0.018200915,pos,ns,0.784470174,Hivep2,Hivep2_Intron,10,14017891,14017940,14017939,14017940,50,-,TTTTTATGCCTGGATATGCGTCATCAGTGGGTATTTTCTCTGGTGACTCG,"Intron (Hivep2-204/Hivep2, intron 2 of 12)",10,13966075,14150589,184515,1,Hivep2-204,51816,Hivep2-204;Hivep2-201;Hivep2-205;Hivep2-203;Hivep2-206,Hivep2;Hivep2;Hivep2;Hivep2;Hivep2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,9,15273,ENSMUSG00000015501,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21999,cg19550465,-0.00000379,0.00000158,-2.396513813,0.017144045,loss,ns,0.00000057,0.00000269,0.212086151,0.8321792,pos,ns,0.000543037,0.000787936,0.689189391,0.491219605,pos,ns,0.308724308,-0.0000577,0.0000271,-2.1305982,0.033909143,neg,ns,0.016943965,Zfp143,Zfp143_Promoter,7,110061779,110061828,110061779,110061780,50,+,CGTATATAAATGTGTTTTTACCCAGTGTGCATTATTCTCCGCCTGGCCGC,Promoter (<=1kb),7,110061217,110094808,33592,1,Zfp143-204,562,Zfp143-204;Zfp143-205;Zfp143-201;Zfp143-202,Zfp143;Zfp143;Zfp143;Zfp143,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,3,7,20841,ENSMUSG00000061079,conserved gene and region,7,110061325,110061866,542,*,542,40,0.590405904,0.850196078,0.073800738,2.91E-25,CpGisland,TRUE,U1,Pr-A
18148,cg20675580,0.0000273,0.00000937,2.909469814,0.003882277,gain,ns,-0.00000337,0.0000159,-0.212057656,0.832201411,neg,ns,-0.016619106,0.004662251,-3.564609574,0.000421829,neg,ns,3.37486398,0.000532661,0.000160334,3.322188694,0.000999993,pos,ns,0.169957705,Hsd17b12,Hsd17b12_Intron,2,94241929,94241978,94241929,94241930,50,-,CGTAAAGAGAAAAACTCCCCCAGAGCACTAAATAAATACAGACGAGGCCG,"Intron (Mir670hg-205/Mir670hg-205, intron 2 of 5)",2,94032689,94157964,125276,2,Hsd17b12-201,-84014,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,14,19,56348,ENSMUSG00000027195,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1621,cg09227751,-0.00000446,0.0000037,-1.2063555,0.228600275,loss,ns,-0.00000133,0.00000628,-0.211986649,0.832256758,neg,ns,-0.003133419,0.00183972,-1.703204604,0.089532038,neg,ns,1.048021532,0.0000367,0.0000633,0.580319398,0.562120827,pos,ns,0.905677074,Zfp521,Zfp521_Intron,18,13896528,13896577,13896576,13896577,50,+,TTTCCAGCTTCTCCGAATTCAGGTATTAGTAAAGACCGCTTGGGGACACG,"Intron (Zfp521-201/Zfp521, intron 3 of 7)",18,13687013,13972787,285775,2,Zfp521-201,76210,Zfp521-201;Zfp521-204;Zfp521-203;Zfp521-202,Zfp521;Zfp521;Zfp521;Zfp521,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,81,225207,ENSMUSG00000024420,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20757,cg01938019,-0.0000261,0.00000737,-3.541046456,0.000459729,loss,ns,-0.00000265,0.0000125,-0.211762157,0.832431748,neg,ns,-0.002146528,0.003668298,-0.58515618,0.558868389,neg,ns,0.252690455,-0.0000645,0.000126152,-0.511574813,0.609312815,neg,ns,0.906243565,Prkaa2,Prkaa2_Exon,4,105039988,105040037,105039988,105039989,50,-,CGAGGTAGAACTCACTGGCTTGGTTCATTATTCTCCGATTGTCAATGATA,"Exon (Prkaa2-201/Prkaa2, exon 7 of 9)",4,105029874,105109890,80017,2,Prkaa2-201,69853,Prkaa2-201,Prkaa2,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,108079,ENSMUSG00000028518,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3319,cg09611201,-0.0000189,0.00000682,-2.779962712,0.005768747,loss,ns,0.00000245,0.0000116,0.21172325,0.832462077,pos,ns,0.000316042,0.003392148,0.093168804,0.925829641,pos,ns,0.033468919,-0.000210566,0.000116656,-1.805018227,0.072042038,neg,ns,0.895734713,Kcnma1,Kcnma1_Exon,14,23591617,23591666,23591617,23591618,50,-,CGTTGAAAGCCATGTCGATCTGTAATGTGAAATCTTTGTAGAAATTCTGG,"Exon (Kcnma1-207/Kcnma1, exon 3 of 28)",14,23289431,23803304,513874,2,Kcnma1-207,211638,Kcnma1-207;Kcnma1-210;Kcnma1-205;Kcnma1-201;Kcnma1-208;Kcnma1-209;Kcnma1-212;Kcnma1-204;Kcnma1-202;Kcnma1-211;Kcnma1-229;Kcnma1-234;Kcnma1-223;Kcnma1-214;Kcnma1-216;Kcnma1-219;Kcnma1-220;Kcnma1-224;Kcnma1-233;Kcnma1-236;Kcnma1-237;Kcnma1-213;Kcnma1-228;Kcnma1-203;Kcnma1-206;Kcnma1-221;Kcnma1-225;Kcnma1-226;Kcnma1-230;Kcnma1-235;Kcnma1-238;Kcnma1-231;Kcnma1-232;Kcnma1-227,Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,16,41,16531,ENSMUSG00000063142,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2644,cg11051793,-0.00000383,0.00000301,-1.270537856,0.204845792,loss,ns,0.00000108,0.00000512,0.211533361,0.832610101,pos,ns,0.00028798,0.001498662,0.192157821,0.847744397,pos,ns,0.071735072,-0.0000549,0.0000515,-1.06557933,0.287443066,neg,ns,0.932056556,Arhgap21,Arhgap21_Exon,2,20854182,20854231,20854230,20854231,50,-,TCACAGAATCCACTAGTGACATTACCGTGTGATAGACTCCTCCCACTTCG,"Exon (Arhgap21-217/Arhgap21, exon 18 of 20)",2,20847919,20967721,119803,2,Arhgap21-210,113490,Arhgap21-210;Arhgap21-201;Arhgap21-213;Arhgap21-208;Arhgap21-205;Arhgap21-217;Arhgap21-203;Arhgap21-209;Arhgap21-206;Arhgap21-218;Arhgap21-216,Arhgap21;Arhgap21;Arhgap21;Arhgap21;Arhgap21;Arhgap21;Arhgap21;Arhgap21;Arhgap21;Arhgap21;Arhgap21,0;0;0;0;-935;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,4,71435,ENSMUSG00000036591,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25782,cg15528897,0.000107154,0.0000136,7.887571534,5.32E-14,gain,yes,0.00000488,0.0000231,0.211438296,0.83268421,pos,ns,0.019867912,0.006761478,2.938397666,0.003546717,pos,ns,2.450173501,-0.00043645,0.000232527,-1.876987549,0.061458847,neg,ns,0.199202449,Uncx,Uncx_Promoter,5,139541421,139541470,139541421,139541422,50,+,CGAGCGAAATTTCAACTCAAATTAACATTCTGTCAGCTCCAGAAAATGGG,Promoter (2-3kb),5,139543494,139548179,4686,1,Uncx-201,-2024,Uncx-201;Uncx-202,Uncx;Uncx,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,22,88,22255,ENSMUSG00000029546,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
13705,cg11720786,0.0000892,0.0000159,5.592825688,4.91E-08,gain,yes,0.00000572,0.0000271,0.211367861,0.832739119,pos,ns,0.046485769,0.007933809,5.859199278,1.19E-08,pos,ns,7.92529847,-0.001294524,0.000272843,-4.744574924,0.00000319,neg,ns,0.296495747,Tle1,Tle1_Intron,4,72185518,72185567,72185566,72185567,50,-,TTTTATTGCTTAAAATTTAATTTGTTCCAACTCGTGTCTCCATGACAACG,"Intron (Tle1-203/Tle1, intron 4 of 19)",4,72117142,72200919,83778,2,Tle1-203,15352,Tle1-203;Tle1-202;Tle1-204;Tle1-207;Tle1-201;Tle1-205;Tle1-209;Tle1-208,Tle1;Tle1;Tle1;Tle1;Tle1;Tle1;Tle1;Tle1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,20,21885,ENSMUSG00000008305,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18089,cg26672959,0.0000566,0.0000128,4.437105693,0.0000127,gain,ns,0.00000458,0.0000217,0.211302249,0.832790269,pos,ns,-0.018730003,0.006351455,-2.948930932,0.00343127,neg,ns,2.464545166,0.000726576,0.000218426,3.326416489,0.000985466,pos,ns,0.609877691,Magi1,Magi1_Intron,6,93717386,93717435,93717434,93717435,50,-,GTTATGTCAGATTTCTCCCCAGCATCGGAGTTACCAGGCTGTTCATATCG,"Intron (Magi1-201/Magi1, intron 11 of 21)",6,93675455,94283322,607868,2,Magi1-201,565887,Magi1-201;Magi1-202;Magi1-208;Magi1-203;Magi1-206;Magi1-209;Magi1-205,Magi1;Magi1;Magi1;Magi1;Magi1;Magi1;Magi1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,18,14924,ENSMUSG00000045095,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
18810,cg01416924,0.00000142,0.00000745,0.19080943,0.8487998,gain,ns,-0.00000267,0.0000126,-0.211268321,0.832816718,neg,ns,-0.01278174,0.003705518,-3.449380038,0.000639679,neg,ns,3.194037606,0.000364552,0.000127432,2.860745452,0.00451356,pos,ns,0.708669812,Clstn2,Clstn2_Intron,9,97560905,97560954,97560953,97560954,50,-,ATTTGCTGCACCTTAATGATCAGCTATGTCAGTGATGTCAAAACAGGTCG,"Intron (Clstn2-201/Clstn2, intron 5 of 17)",9,97444395,98033181,588787,2,Clstn2-201,472227,Clstn2-201;Clstn2-202,Clstn2;Clstn2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,2,64085,ENSMUSG00000032452,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14886,cg11644882,-0.000000492,0.000000269,-1.82983183,0.068235298,loss,ns,9.64E-08,0.000000456,0.211204097,0.832866787,pos,ns,-0.000382186,0.000133701,-2.858511227,0.004544632,neg,ns,2.342501301,0.00000816,0.0000046,1.773746928,0.077086648,pos,ns,0.993943654,Flot2,Flot2_threeUTR,11,78054821,78054870,78054869,78054870,50,+,CGAGGACGTAGAGACGGCCGAGGGGGTAGCTTTAACTGTGACGGGTGTCG,3' UTR,11,78037931,78060434,22504,1,Flot2-201,16890,Flot2-201;Flot2-205;Flot2-203;Flot2-202;Flot2-204,Flot2;Flot2;Flot2;Flot2;Flot2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,13,14252,ENSMUSG00000061981,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1048,cg03671849,-0.00000963,0.00000584,-1.648300104,0.100304174,loss,ns,0.00000209,0.00000992,0.211173115,0.832890941,pos,ns,-0.000467944,0.002906449,-0.161002081,0.872196632,neg,ns,0.059385594,0.0000192,0.0001,0.192215964,0.847698893,pos,ns,0.890198053,Shprh,Shprh_Exon,10,11205213,11205262,11205261,11205262,50,-,CAGAACTCTGATGAAAATACAGCTTAGAGATCCAGGGGCCAAAGCACTCG,"Exon (Shprh-201/Shprh, exon 26 of 30)",10,11149430,11217595,68166,1,Shprh-201,55783,Shprh-201;Shprh-202;Shprh-203;Shprh-204;Shprh-208,Shprh;Shprh;Shprh;Shprh;Shprh,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,268281,ENSMUSG00000090112,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14502,cg15105417,-0.00000117,0.00000294,-0.398133596,0.690805759,loss,ns,-0.00000106,0.000005,-0.210980801,0.833040873,neg,ns,0.0000976,0.001465756,0.066590759,0.946950428,pos,ns,0.023672755,-0.0000452,0.0000504,-0.897547328,0.37012346,neg,ns,0.884443963,Puf60,Puf60_Exon,15,76074379,76074428,76074427,76074428,50,-,ATTAGTTTTAAGGTGGGCCCTCAGAGCAGATGGAGGCCTCCCCAGGGGCG,"Exon (Puf60-211/Puf60, exon 5 of 5)",15,76070182,76080913,10732,2,Puf60-202,6485,Puf60-202;Puf60-204;Puf60-201;Puf60-203;Puf60-207;Puf60-210;Puf60-211;Puf60-208;Puf60-206;Puf60-209;Scrib-201;Scrib-202;Scrib-203,Puf60;Puf60;Puf60;Puf60;Puf60;Puf60;Puf60;Puf60;Puf60;Puf60;Scrib;Scrib;Scrib,0;0;0;-2982;0;0;0;0;3274;2525;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,6,67959,ENSMUSG00000002524,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9458,cg17413263,-0.0000278,0.00000486,-5.707397803,2.68E-08,loss,yes,-0.00000174,0.00000826,-0.210970406,0.833048978,neg,ns,-0.002570344,0.002419974,-1.062137046,0.289000203,neg,ns,0.539101852,0.0000715,0.0000832,0.858701138,0.391168894,pos,ns,0.890070792,Gm46453,Gm46453_Intron,14,48799797,48799846,48799845,48799846,50,+,TTGAAATCCTCAGCTGTGATAAATTAAGCTACTTATTAATCTAATTATCG,"Intron (Otx2os1-206/Otx2os1-206, intron 2 of 4)",14,48834168,48834534,367,2,Gm46453-201,34688,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,9,108168159,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
639,cg01090774,-0.0000247,0.0000113,-2.191535333,0.02915681,loss,ns,0.00000403,0.0000191,0.210854058,0.833139689,pos,ns,-0.005817621,0.005600116,-1.038839413,0.299689006,neg,ns,0.523329189,-0.000223744,0.000192588,-1.161777613,0.246219513,neg,ns,0.819032197,Rbfox1,Rbfox1_Exon,16,7409702,7409751,7409750,7409751,50,+,ACCTTTGACTGATGCCAAGACTAGGAGCCATGCTGATGATGTGGGTCTCG,"Exon (Rbfox1-201/Rbfox1, exon 15 of 15)",16,6349138,7411526,1062389,1,Rbfox1-201,1060564,Rbfox1-201;Rbfox1-202;Rbfox1-203;Rbfox1-208;Rbfox1-207;Rbfox1-206,Rbfox1;Rbfox1;Rbfox1;Rbfox1;Rbfox1;Rbfox1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,35,268859,ENSMUSG00000008658,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5207,cg08987443,-0.00000777,0.00000257,-3.019833961,0.002739403,loss,ns,0.000000921,0.00000437,0.210812203,0.833172321,pos,ns,0.0000474,0.001280481,0.03702033,0.970492624,pos,ns,0.013007761,-0.0000511,0.000044,-1.159908475,0.246978624,neg,ns,0.953058757,Tmem273,Tmem273_Intron,14,32796651,32796700,32796699,32796700,50,-,TGAATATTGCATGAATAATAATAACCCCACCACTTAGCGGTTATGCAACG,"Intron (Tmem273-201/Tmem273, intron 1 of 4)",14,32785963,32817984,32022,1,Tmem273-201,10688,Tmem273-201;Tmem273-202;Tmem273-203;Tmem273-204,Tmem273;Tmem273;Tmem273;Tmem273,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,69069,ENSMUSG00000041707,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8269,cg26226211,-0.0000102,0.00000871,-1.175195518,0.24081834,loss,ns,-0.00000312,0.0000148,-0.210784812,0.833193677,neg,ns,0.001604477,0.004335025,0.370119376,0.711546286,pos,ns,0.147796844,-0.000228778,0.000149081,-1.534588699,0.125904825,neg,ns,0.786277892,Ebf1,Ebf1_Exon,11,44908013,44908062,44908013,44908014,50,-,CGGTACCATGCTGGTCTGGAGTGAGGTAGGTGTTGTCTGAACATTAATAT,"Exon (Ebf1-203/Ebf1, exon 9 of 16)",11,44617317,45004995,387679,1,Ebf1-203,290696,Ebf1-203;Ebf1-202;Ebf1-201;Ebf1-206,Ebf1;Ebf1;Ebf1;Ebf1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,15,80,13591,ENSMUSG00000057098,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22675,cg27121936,-0.00000906,0.00000259,-3.500036998,0.000533404,loss,ns,-0.000000926,0.0000044,-0.210633529,0.83331163,neg,ns,0.001840845,0.001288505,1.428666923,0.154106776,pos,ns,0.812178266,-0.0000977,0.0000443,-2.204269324,0.02823994,neg,ns,0.952873861,Sox6,Sox6_Intron,7,115661175,115661224,115661223,115661224,50,-,TTTTCATTTTGAAATATAATTACAAAGTGTTCACTGTAAGATATCACTCG,"Intron (Sox6-210/Sox6, intron 6 of 15)",7,115470872,116031047,560176,2,Sox6-210,369823,Sox6-210;Sox6-201;Sox6-202;Sox6-204;Sox6-205;Sox6-203;Sox6-212;Sox6-206;Sox6-209;Sox6-214;Sox6-207;Sox6-213,Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,37,57,20679,ENSMUSG00000051910,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11477,cg07060238,-0.000000426,0.00000217,-0.196239377,0.844551388,loss,ns,-0.000000776,0.00000369,-0.210582439,0.833351465,neg,ns,0.003118829,0.001079827,2.888267546,0.004146355,pos,ns,2.382333502,-0.0000304,0.0000371,-0.817568902,0.414231308,neg,ns,0.946897206,Tsc22d2,Tsc22d2_threeUTR,3,58437367,58437416,58437367,58437368,50,+,CGAAAGCCGAAAGTTTAAAAGTTGTGATGCCCTCACATGGTTGGAGGGTT,3' UTR,3,58414715,58466783,52069,1,Tsc22d2-201,22652,Tsc22d2-201;Tsc22d2-203;Tsc22d2-202,Tsc22d2;Tsc22d2;Tsc22d2,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,7,72033,ENSMUSG00000027806,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9737,cg22490381,0.0000329,0.00000709,4.635231692,0.00000526,gain,ns,0.00000254,0.000012,0.210480135,0.833431232,pos,ns,0.00832132,0.003528528,2.35829775,0.01897956,pos,ns,1.721713865,-0.000144328,0.000121346,-1.189394447,0.235194678,neg,ns,0.060043983,Bbx,Bbx_Intron,16,50429620,50429669,50429668,50429669,50,-,CGGCTTTGTTGCTGGTCACCATCAAGTTTGCATCTTAGTACAAAATGTCG,"Intron (Bbx-208/Bbx, intron 1 of 16)",16,50191844,50432390,240547,2,Bbx-208,2721,Bbx-208;Bbx-201;Bbx-203;Bbx-202;Bbx-204;Bbx-207;Bbx-209;Bbx-206,Bbx;Bbx;Bbx;Bbx;Bbx;Bbx;Bbx;Bbx,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,10,70508,ENSMUSG00000022641,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
198,cg26220938,-0.00000768,0.00000229,-3.347565258,0.000915697,loss,ns,0.00000082,0.0000039,0.210305092,0.83356772,pos,ns,-0.0000186,0.00114195,-0.016291559,0.987012271,neg,ns,0.005677448,-0.0000514,0.0000393,-1.307585977,0.191982682,neg,ns,0.957569137,Fzd1,Fzd1_Intergenic_downstream,5,4731749,4731798,4731749,4731750,50,+,CGTATTAGCTTAACCTGTTATAGAATATAAATGAGCCCATATGGCACAGA,Distal Intergenic,5,4753839,4758035,4197,2,Fzd1-201,26237,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,5,14362,ENSMUSG00000044674,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14960,cg14336003,0.0000134,0.0000121,1.103226584,0.270784453,gain,ns,-0.00000432,0.0000206,-0.210132944,0.833701954,neg,ns,-0.001161379,0.006026327,-0.192717607,0.847306325,neg,ns,0.071959551,0.00029349,0.000207245,1.416150797,0.157735342,pos,ns,0.263367522,Pvalb,Pvalb_fiveUTR,15,78204178,78204227,78204226,78204227,50,+,GAAAAGATTAAAAAGTGCTTTTCTCATCATTTCTGCTCATATGACCAGCG,Promoter (<=1kb),15,78191114,78204237,13124,2,Pvalb-201,10,Pvalb-201;Pvalb-202,Pvalb;Pvalb,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,4,19293,ENSMUSG00000005716,conserved gene but different region,15,78204226,78204393,168,*,168,21,0.767857143,0.856726566,0.125,1.64E-18,CpGisland,TRUE,NA,NRS
15641,cg00167853,0.0000366,0.0000158,2.321007884,0.020934816,gain,ns,-0.00000562,0.0000268,-0.21000585,0.833801062,neg,ns,0.034399151,0.007845419,4.384616283,0.0000159,pos,ns,4.797678626,-0.000998972,0.000269803,-3.702593149,0.000252542,neg,ns,0.337325968,Nfib,Nfib_Exon,4,82498250,82498299,82498250,82498251,50,-,CGTAGTATGCCAAAAACAAATCAAGCTCCTTAACTGATACTGTGATATGA,"Exon (Nfib-201/Nfib, exon 2 of 12)",4,82290173,82505308,215136,2,Nfib-201,7009,Nfib-201;Nfib-203;Nfib-202;Nfib-205;Nfib-206;Nfib-204;Nfib-207;Nfib-209;Nfib-210;Nfib-208;Nfib-212;Nfib-211,Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,14,66,18028,ENSMUSG00000008575,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13986,cg08722366,0.00000154,0.00000544,0.28223314,0.777953082,gain,ns,-0.00000194,0.00000925,-0.209810952,0.833953046,neg,ns,-0.005837496,0.002709844,-2.154181133,0.031996349,neg,ns,1.494899578,0.000127579,0.0000932,1.368998053,0.171990975,pos,ns,0.940970799,Mecp2,Mecp2_threeUTR,X,74035355,74035404,74035403,74035404,50,+,GAGAAGAGACAACAGCTGCCTTTATTCTTGTTGGTTTGCTTTGCAATCCG,3' UTR,20,74026592,74085669,59078,2,Mecp2-202,50265,Mecp2-202;Mecp2-205;Mecp2-201;Mecp2-203;Mecp2-204,Mecp2;Mecp2;Mecp2;Mecp2;Mecp2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,10,17257,ENSMUSG00000031393,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4852,cg22253535,-0.00000747,0.00000593,-1.259469918,0.208808089,loss,ns,-0.00000211,0.0000101,-0.209787328,0.833971468,neg,ns,-0.006572444,0.002950792,-2.22734893,0.026641685,neg,ns,1.574438305,0.00011535,0.000101478,1.13670881,0.256537947,pos,ns,0.855937086,Ctnnd2,Ctnnd2_Exon,15,31004945,31004994,31004993,31004994,50,+,GCAGGATGGATGGTCACAATACCACTTTGTAGCCTCGTCTTCAACCATCG,"Exon (Ctnnd2-201/Ctnnd2, exon 20 of 23)",15,30172593,31029341,856749,1,Ctnnd2-201,832352,Ctnnd2-201;Ctnnd2-203;Ctnnd2-206,Ctnnd2;Ctnnd2;Ctnnd2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,10,18163,ENSMUSG00000022240,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7182,cg19560272,-0.00000701,0.00000175,-3.999289242,0.0000795,loss,ns,-0.000000624,0.00000298,-0.209784787,0.83397345,neg,ns,0.000360635,0.000871833,0.413650996,0.679415737,pos,ns,0.167864398,0.000000875,0.00003,0.029179315,0.976740355,pos,ns,0.054797832,Jade1,Jade1_Intron,3,41565378,41565427,41565378,41565379,50,+,CGCCGGATGGCTTCCTGTGACAGAGGTGATACACAGTTTCCAGAACTGTC,"Intron (Jade1-201/Jade1, intron 1 of 10)",3,41555731,41616864,61134,1,Jade1-201,9647,Jade1-201;Jade1-210;Jade1-214;Jade1-202;Jade1-209;Jade1-204;Jade1-203;Jade1-211;Jade1-206,Jade1;Jade1;Jade1;Jade1;Jade1;Jade1;Jade1;Jade1;Jade1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,16,269424,ENSMUSG00000025764,conserved gene and region,3,41565120,41565382,263,*,263,47,0.790874525,1.143795688,0.178707224,7.54E-50,CpGisland,TRUE,U1,Pr-A
4940,cg12798596,-7.32E-08,0.00000053,-0.138127414,0.890229398,loss,ns,-0.000000189,0.000000901,-0.209782613,0.833975145,neg,ns,0.000421465,0.000263931,1.596878987,0.111311511,pos,ns,0.953459922,-0.0000149,0.00000908,-1.645688078,0.100841462,neg,ns,0.013997107,Cbll1,Cbll1_fiveUTR,12,31499512,31499561,31499512,31499513,50,-,CGCCTCCTTACCAGTGTGATCCATGATTCGGCTCGCAGAGCACAGTGGGA,Promoter (<=1kb),12,31484829,31499555,14727,2,Cbll1-201,0,Cbll1-201;Cbll1-204;Cbll1-203;Cbll1-205;Cbll1-202,Cbll1;Cbll1;Cbll1;Cbll1;Cbll1,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,3,104836,ENSMUSG00000020659,mapped to different genes,12,31499269,31499749,481,*,481,44,0.669438669,0.817269076,0.091476092,6.78E-32,CpGisland,TRUE,U1,Pr-A
14181,cg25708328,0.0000387,0.00000413,9.363918575,1.63E-18,gain,yes,0.00000147,0.00000702,0.209708608,0.834032858,pos,ns,0.012233552,0.002055214,5.952446379,7.14E-09,pos,ns,8.146095061,-0.000257346,0.0000707,-3.641066927,0.000318069,neg,ns,0.116779157,Hoxd3,Hoxd3_fiveUTR,2,74732887,74732936,74732935,74732936,50,+,TAATTCAGCACGTCCCTTAAGAAACACGGAGTCGTCATTAATCTGCCACG,Promoter (<=1kb),2,74732913,74744214,11302,1,Hoxd3-205,0,Gm28230-201;Hoxd3-203;Hoxd3-205;Hoxd3-202;Hoxd4-203;Hoxd4-201;Hoxd4-202,Gm28230;Hoxd3;Hoxd3;Hoxd3;Hoxd4;Hoxd4;Hoxd4,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,8,24,15434,ENSMUSG00000079277,conserved gene but different region,2,74732626,74733055,430,*,430,35,0.590697674,0.938923202,0.081395349,1.14E-23,CpGisland,TRUE,U13,Hc-P
9380,cg19248807,-0.00000104,0.00000363,-0.286790804,0.774464091,loss,ns,-0.00000129,0.00000617,-0.20952809,0.834173637,neg,ns,-0.000878532,0.001807749,-0.485981018,0.62732396,neg,ns,0.202508125,-0.0000149,0.0000622,-0.239103093,0.811183641,neg,ns,0.922971008,Tenm3,Tenm3_Intron,8,48508701,48508750,48508749,48508750,50,+,ACTGTGAACTTGAAGCATTTCAGCAAATGAAGGCCAATACACATAAAACG,"Intron (Tenm3-201/Tenm3, intron 2 of 28)",8,48227682,48674690,447009,2,Tenm3-201,165940,Tenm3-201;Tenm3-206;Tenm3-204;Tenm3-208;Tenm3-203;Tenm3-202,Tenm3;Tenm3;Tenm3;Tenm3;Tenm3;Tenm3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,39,23965,ENSMUSG00000031561,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10516,cg12830284,0.000000212,0.00000376,0.056422891,0.95504127,gain,ns,0.00000134,0.0000064,0.209526064,0.834175217,pos,ns,-0.001257631,0.001873809,-0.671162612,0.502616722,neg,ns,0.298763067,-0.0000177,0.0000644,-0.275363455,0.783220467,neg,ns,0.93407236,Npas3,Npas3_Intron,12,53948176,53948225,53948176,53948177,50,-,CGAAGGATTTATTCTTTGCTGATTGGGGCTTTAAATTAATTGAAGTTCCA,"Intron (Npas3-204/Npas3, intron 5 of 10)",12,53248157,54069532,821376,1,Npas3-204,700019,Npas3-204;Npas3-201;Npas3-203,Npas3;Npas3;Npas3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,83,103,27386,ENSMUSG00000021010,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26320,cg23651523,0.00000882,0.00000587,1.504595904,0.133446139,gain,ns,0.00000209,0.00000996,0.209300662,0.834351007,pos,ns,-0.005796504,0.002919082,-1.985728455,0.047944153,neg,ns,1.319264352,0.000139245,0.000100387,1.387086387,0.166411892,pos,ns,0.75117643,Gm14111,Gm14111_Intergenic_downstream,2,146723498,146723547,146723498,146723499,50,-,CGGAAGGAAAATGATGTGGAAGGCATAATAAGCGAGCTGCTCAGAATTAA,Distal Intergenic,2,146754707,146755705,999,2,Gm14111-201,32207,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,15,17,668918,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1058,cg27656592,0.00000135,0.00000155,0.873099236,0.383284784,gain,ns,0.00000055,0.00000263,0.209287131,0.83436156,pos,ns,-0.00029089,0.000770402,-0.377582368,0.705999244,neg,ns,0.151195764,-0.0000082,0.0000265,-0.309441326,0.757193725,neg,ns,0.962836369,Vsnl1,Vsnl1_Exon,12,11332083,11332132,11332131,11332132,50,-,TGCTCAAAGCTGCCCCTGGAGGTGATGGACAGAGCGCAGATGAACTCTCG,"Exon (Vsnl1-202/Vsnl1, exon 3 of 4)",12,11325242,11435640,110399,2,Vsnl1-202,103508,Vsnl1-202;Vsnl1-201,Vsnl1;Vsnl1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,6,26950,ENSMUSG00000054459,conserved gene and region,12,11332131,11332187,57,*,57,8,0.614035088,1.551020408,0.140350877,0.000000143,CpGisland,TRUE,U15,NS
19077,cg12832612,0.00000154,0.000000815,1.889032289,0.059820713,gain,ns,-0.00000029,0.00000138,-0.209226649,0.834408732,neg,ns,0.000160454,0.000405604,0.39559233,0.692677895,pos,ns,0.159468671,-0.0000103,0.0000139,-0.741996225,0.458651418,neg,ns,0.022818336,Neurod2,Neurod2_Exon,11,98327235,98327284,98327283,98327284,50,+,GGTGAAGGTGCATATCGTAAGACAAGAGATTCTCCGAGTGGACGCCCCCG,"Exon (Neurod2-201/Neurod2, exon 2 of 2)",11,98325415,98329648,4234,2,Neurod2-201,2364,Neurod2-201,Neurod2,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,22,18013,ENSMUSG00000038255,conserved gene and region,11,98326920,98328611,1692,*,1692,170,0.684397163,0.858173443,0.100472813,1.13E-128,CpGisland,TRUE,NA,NRS
22837,cg24505061,-0.00000376,0.00000147,-2.563076459,0.01084669,loss,ns,0.000000521,0.00000249,0.209135404,0.834479896,pos,ns,0.001595629,0.000730446,2.184459307,0.029677338,pos,ns,1.527575062,-0.0000822,0.0000251,-3.270644547,0.00119388,neg,ns,0.047244191,Slc30a7,Slc30a7_Exon,3,116006850,116006899,116006850,116006851,50,-,CGTAGAGTAGTTCCACAAAAGCGAAAGAGAGGTTCAGGCACAGGAAGAAA,Promoter (<=1kb),3,115938973,116007406,68434,2,Slc30a7-201,507,Extl2-201;Extl2-202;Extl2-204;Extl2-205;Extl2-206;Extl2-203;Slc30a7-201,Extl2;Extl2;Extl2;Extl2;Extl2;Extl2;Slc30a7,-563;-579;-586;-624;-929;-1321;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,66500,ENSMUSG00000054414,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
2668,cg12126471,-0.000000809,0.00000214,-0.377942012,0.705732323,loss,ns,0.000000761,0.00000364,0.209070203,0.83453075,pos,ns,0.000561967,0.001065844,0.527250532,0.598396738,pos,ns,0.223010782,-0.0000365,0.0000367,-0.997026235,0.319529375,neg,ns,0.939157234,Peli1,Peli1_Exon,11,21148199,21148248,21148199,21148200,50,+,CGGCCATGTACATGGCTATCATAACTGGGGAAACAAAGAAGAACGTGATG,"Exon (Peli1-201/Peli1, exon 7 of 7)",11,21091291,21150323,59033,1,Peli1-201,56908,Peli1-201;Peli1-203;Peli1-202,Peli1;Peli1;Peli1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,67245,ENSMUSG00000020134,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6184,cg16559240,-0.00000481,0.00000188,-2.554911138,0.011098959,loss,ns,0.000000668,0.0000032,0.209039529,0.834554675,pos,ns,0.001555837,0.000936779,1.660836422,0.097757323,pos,ns,1.009850698,-0.0000177,0.0000322,-0.549865759,0.582807384,neg,ns,0.059671803,Pura,Pura_Intron,18,36286979,36287028,36287027,36287028,50,+,CTGGGGAGTCAGTGCCCTGTTACCGGGTCTCGTCTGTCTCGTCTCTCCCG,"Intron (Pura-201/Pura, intron 1 of 1)",18,36281097,36292535,11439,1,Pura-201,5882,Pura-201,Pura,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,19,19290,ENSMUSG00000043991,conserved gene but different region,18,36286687,36288029,1343,*,1343,129,0.68652271,0.823041768,0.096053611,4.14E-95,CpGisland,TRUE,U1,Pr-A
2870,cg10442424,-0.0000131,0.00000763,-1.721416587,0.08617289,loss,ns,0.00000271,0.000013,0.209032324,0.834560294,pos,ns,0.006764787,0.003799047,1.780653355,0.07594832,pos,ns,1.119481831,-0.00034326,0.000130649,-2.627350182,0.009033194,neg,ns,0.940904265,Ccdc178,Ccdc178_Intron,18,21996490,21996539,21996538,21996539,50,+,GCAGGTTTTCCAATTTAAATGAGCCCCTTTAACTATAAAAAATTGGCACG,"Intron (Ccdc178-204/Ccdc178, intron 21 of 23)",18,21810893,22171442,360550,2,Ccdc178-204,174903,Ccdc178-204;Ccdc178-201;Ccdc178-202,Ccdc178;Ccdc178;Ccdc178,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,19,21,70950,ENSMUSG00000024306,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26771,cg00207040,0.00000536,0.00000939,0.570621889,0.568669353,gain,ns,0.00000333,0.000016,0.208942955,0.834629999,pos,ns,0.001819936,0.004673457,0.389419545,0.697233195,pos,ns,0.156621945,-0.000125742,0.00016072,-0.782364877,0.434597361,neg,ns,0.799411381,Iqsec2,Iqsec2_Exon,X,152222246,152222295,152222294,152222295,50,+,GCTGCTCTGACGCTGGGCTCCTTGCTTGTGGGTGCAGGGAAGCGGGGGCG,"Exon (Iqsec2-207/Iqsec2, exon 14 of 15)",20,152144268,152225235,80968,1,Iqsec2-207,77978,Iqsec2-207;Iqsec2-202;Iqsec2-203;Iqsec2-201,Iqsec2;Iqsec2;Iqsec2;Iqsec2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,16,245666,ENSMUSG00000041115,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23909,cg10443069,-0.00000967,0.00000813,-1.188959957,0.235365366,loss,ns,0.00000289,0.0000138,0.208883067,0.834676711,pos,ns,-0.005348623,0.00404632,-1.321848842,0.187193081,neg,ns,0.727710209,-0.000108678,0.000139153,-0.780997612,0.435399894,neg,ns,0.781334406,Rwdd3,Rwdd3_Intergenic_downstream,3,121059643,121059692,121059691,121059692,50,-,TTTTCTATATTTCATAACCTGCAATTTTGAAGCCATGCTTGGTACACACG,Distal Intergenic,3,121155400,121156820,1421,2,Rwdd3-208,97177,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,4,66568,ENSMUSG00000028133,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13325,cg23718844,0.0000331,0.00000793,4.171950374,0.0000393,gain,ns,-0.00000281,0.0000135,-0.208858018,0.834696248,neg,ns,0.003974093,0.003944887,1.007403415,0.314526621,pos,ns,0.502342591,-0.000265188,0.000135664,-1.954739662,0.051512348,neg,ns,0.53876449,Gm44690,Gm44690_Intergenic_upstream,7,70104589,70104638,70104637,70104638,50,-,TATAATTGCTTTTATTTGCATACGACAATTAGGCAGGATGGCTCACAGCG,Distal Intergenic,7,69883979,69884360,382,2,Gm44690-201,-220278,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,15,24,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18937,cg27061549,-0.0000353,0.0000115,-3.062415453,0.002388016,loss,ns,0.00000409,0.0000196,0.20881935,0.834726409,pos,ns,0.00350131,0.005737397,0.610261161,0.542135925,pos,ns,0.265891813,-0.000483241,0.000197309,-2.449164517,0.014872141,neg,ns,0.710894663,Dach1,Dach1_Intron,14,97975622,97975671,97975622,97975623,50,+,CGAACATGTGGCATTAATACGCAGTCCTGGTTCCTAACCATCTGATAGGC,"Intron (Dach1-201/Dach1, intron 2 of 10)",14,97786853,98169543,382691,2,Dach1-201,193872,Dach1-201;Dach1-202;Dach1-203,Dach1;Dach1;Dach1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,76,13134,ENSMUSG00000055639,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3236,cg04836428,0.0000394,0.00000644,6.115519464,2.89E-09,gain,yes,-0.00000228,0.0000109,-0.208815287,0.834729578,neg,ns,0.010183009,0.00320536,3.17686948,0.001638722,pos,ns,2.785494781,-0.000130074,0.000110232,-1.18000531,0.2389028,neg,ns,0.151111301,Gm7788,Gm7788_Intergenic_downstream,18,23310038,23310087,23310038,23310039,50,+,CGGATGAGGAGGATGAGATCATAGTTTCAGGATCCTCAGGAAACCCTGGT,Distal Intergenic,18,23216669,23217611,943,1,Gm7788-201,93369,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,665797,NA,mapped to different genes,18,23310007,23310039,33,*,33,6,0.787878788,1.488721805,0.181818182,0.00000219,CpGisland,TRUE,U13,Hc-P
3564,cg27487401,0.0000312,0.00000386,8.095381475,1.32E-14,gain,yes,0.00000137,0.00000655,0.208778674,0.834758136,pos,ns,-0.000789691,0.001919698,-0.411362026,0.681091338,neg,ns,0.166794643,0.000152068,0.000066,2.303426719,0.02191634,pos,ns,0.068912412,Gm13418,Gm13418_Intergenic_downstream,2,24521706,24521755,24521706,24521707,50,+,CGCTCACGGAGCTCTTTAAGATAAATGAGCAAAATTAAGAGACTCACTGG,Distal Intergenic,2,24494068,24495011,944,1,Gm13418-201,27638,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,433410,NA,mapped to different genes,2,24521623,24521713,91,*,91,12,0.747252747,0.952048823,0.131868132,5.70E-11,CpGisland,TRUE,U3,Pr-B
24308,cg08935648,-0.000107966,0.00000798,-13.52943354,4.29E-33,loss,yes,0.00000283,0.0000136,0.208428553,0.83503124,pos,ns,0.009648182,0.003971779,2.429183765,0.015700878,pos,ns,1.804076066,-0.000564502,0.000136589,-4.132848816,0.0000462,neg,ns,0.187191272,Pou3f1,Pou3f1_Intron,4,124595004,124595053,124595004,124595005,50,+,CGCCCTCAGGAAAGTCTGGCTGGTACAGATTGCCTGAGTCATGAATATTC,"Intron (Gm2164-201/Gm2164-201, intron 1 of 1)",4,124656807,124660655,3849,1,Pou3f1-201,-61754,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,43,85,18991,ENSMUSG00000090125,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
15931,cg06876600,-0.0000267,0.00000573,-4.659970985,0.0000047,loss,ns,-0.00000203,0.00000974,-0.208388801,0.83506225,neg,ns,-0.004737425,0.002853801,-1.660040431,0.097917476,neg,ns,1.009139789,0.000168016,0.0000981,1.711971819,0.087901953,pos,ns,0.901193705,Haao,Haao_Intergenic_upstream,17,83890060,83890109,83890108,83890109,50,+,TTTCCTCAATGTTCTGACAGGCCCTGCATCTGTAACTAATGTGTCACTCG,Distal Intergenic,17,83837173,83847963,10791,2,Haao-205,-42097,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,6,107766,ENSMUSG00000000673,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4664,cg16145518,-0.00000273,0.00000128,-2.129671169,0.033986299,loss,ns,0.000000454,0.00000218,0.208372062,0.835075307,pos,ns,-0.00028907,0.00063784,-0.453201254,0.65072088,neg,ns,0.186605258,0.0000314,0.0000219,1.429583831,0.15384348,pos,ns,0.040466758,Hes1,Hes1_Intergenic_downstream,16,30070281,30070330,30070281,30070282,50,+,CGCTTAGCAGGCCCGGCTGCTTTCTGGCAGGAAATGAATAGCTCCCAGAT,Distal Intergenic,16,30066338,30067319,982,1,Hes1-204,3943,Hes1-202;Hes1-201;Hes1-203;Hes1-204,Hes1;Hes1;Hes1;Hes1,0;0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,20,15205,ENSMUSG00000022528,conserved gene and region,16,30070092,30070295,204,*,204,26,0.789215686,0.818518519,0.12745098,4.29E-23,CpGisland,TRUE,U1,Pr-A
19526,cg11910916,0.0000404,0.00000888,4.549674745,0.00000772,gain,ns,0.00000314,0.0000151,0.208364871,0.835080916,pos,ns,0.002600077,0.004418486,0.588454243,0.556655923,pos,ns,0.254413165,0.000248295,0.000151951,1.634041718,0.103265189,pos,ns,0.685879526,Gm12687,Gm12687_Intergenic_downstream,4,99574162,99574211,99574210,99574211,50,-,TCATCCTCCCCTAACCTTGTCTTTGTCAAAGGGATACAAAAGCCTGCCCG,Distal Intergenic,4,99615817,99616522,706,2,Gm12687-201,42360,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,7,100417847,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17029,cg10274145,0.000000286,0.000001,0.28551679,0.775438919,gain,ns,0.000000354,0.0000017,0.208183936,0.83522206,pos,ns,-0.000436092,0.000497696,-0.876222881,0.381587336,neg,ns,0.418406047,0.0000071,0.0000171,0.415089792,0.678363304,pos,ns,0.969746598,Fbxo11,Fbxo11_Exon,17,87999528,87999577,87999576,87999577,50,+,CTTACCACATAAATCCCACCATGCTGGCCATCATGAATTTTGTTATGCCG,"Exon (Fbxo11-203/Fbxo11, exon 14 of 23)",17,87990859,88065028,74170,2,Fbxo11-203,65451,Fbxo11-203;Fbxo11-201;Fbxo11-204;Fbxo11-206;Fbxo11-202,Fbxo11;Fbxo11;Fbxo11;Fbxo11;Fbxo11,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,3,225055,ENSMUSG00000005371,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1707,cg20318511,-0.00000252,0.00000479,-0.525780395,0.599416698,loss,ns,0.00000169,0.00000813,0.208150075,0.835248476,pos,ns,0.000948342,0.002382731,0.398006393,0.690899424,pos,ns,0.160585169,-0.0000746,0.0000819,-0.910432935,0.363301587,neg,ns,0.870067042,Ss18,Ss18_threeUTR,18,14637448,14637497,14637496,14637497,50,-,GGATACGACGGTTGCTGATAACCGTAATCATTATGACCTACATCAATTCG,3' UTR,18,14624198,14682766,58569,2,Ss18-202,45269,Ss18-202;Ss18-201;Ss18-210;Ss18-203;Ss18-206;Ss18-205;Ss18-212;Ss18-204;Ss18-209;Ss18-211,Ss18;Ss18;Ss18;Ss18;Ss18;Ss18;Ss18;Ss18;Ss18;Ss18,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,5,10,268996,ENSMUSG00000037013,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10109,cg04812054,-0.00000275,0.00000231,-1.189309008,0.235228236,loss,ns,-0.000000817,0.00000393,-0.208075843,0.835306385,neg,ns,0.000603084,0.001150598,0.524148169,0.60055004,pos,ns,0.2214508,0.00000328,0.0000396,0.082829234,0.93404078,pos,ns,0.955767955,Neb,Neb_Exon,2,52186040,52186089,52186088,52186089,50,+,GCCAGCAGATGTCTAGGCTCATCGACTACCAGGTGGTATTTATCTTTCCG,"Exon (Neb-202/Neb, exon 123 of 157)",2,52136647,52338798,202152,2,Neb-202,152709,Neb-202;Neb-201;Neb-203;Neb-213;Neb-214;Neb-209,Neb;Neb;Neb;Neb;Neb;Neb,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,8,17996,ENSMUSG00000026950,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16935,cg16590288,0.0000213,0.00000342,6.228166712,1.53E-09,gain,yes,-0.00000121,0.00000582,-0.208031853,0.835340702,neg,ns,0.003493481,0.001703825,2.050375392,0.041168491,pos,ns,1.385435046,-0.000115531,0.0000586,-1.971705926,0.049532056,neg,ns,0.062710639,Ascl1,Ascl1_Intergenic_downstream,10,87489011,87489060,87489011,87489012,50,+,CGGCTTTGTGTTGCTAAGCGATTAGAGCAGATGTAATGAGATTTTGCCCA,Downstream (1-2kb),10,87490819,87493660,2842,2,Ascl1-201,4600,Ascl1-201,Ascl1,4600,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,11,11,17172,ENSMUSG00000020052,mapped to different genes,10,87488843,87489030,188,*,188,13,0.579787234,0.826233942,0.069148936,3.19E-08,CpGisland,TRUE,U13,Hc-P
14230,cg08275605,-0.0000611,0.0000144,-4.236903357,0.0000299,loss,ns,0.0000051,0.0000245,0.208003666,0.835362691,pos,ns,-0.022186868,0.007180986,-3.089668829,0.002185403,neg,ns,2.660468477,0.000545704,0.000246954,2.209745226,0.027853406,pos,ns,0.823773265,Onecut1,Onecut1_Exon,9,74855073,74855122,74855073,74855074,50,+,CGCCTAATTAATAATAAGTTAGAAACGAAGGAAGGCACCAGCGAATAAAT,Promoter (6-7kb),9,74861921,74891781,29861,1,Onecut1-201,-6799,NA,NA,NA,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,16,28,15379,ENSMUSG00000043013,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
1482,cg15169943,-0.0000213,0.00000847,-2.513684227,0.012454356,loss,ns,0.00000299,0.0000144,0.207993952,0.83537027,pos,ns,0.004728549,0.004214541,1.121960697,0.262747425,pos,ns,0.580461532,-0.000384948,0.000144938,-2.655953564,0.008317481,neg,ns,0.72785044,Ncoa2,Ncoa2_Exon,1,13174188,13174237,13174236,13174237,50,+,ATTTCTGGTAAACCAATATCTTTAGTATCATCTTTATCTAGCAAATAGCG,"Exon (Ncoa2-203/Ncoa2, exon 11 of 22)",1,13139105,13372439,233335,2,Ncoa2-203,198202,Ncoa2-203;Ncoa2-202;Ncoa2-201;Ncoa2-210;Ncoa2-207,Ncoa2;Ncoa2;Ncoa2;Ncoa2;Ncoa2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,6,17978,ENSMUSG00000005886,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26093,cg21659209,-0.00000426,0.00000375,-1.136863528,0.256473353,loss,ns,-0.00000132,0.00000637,-0.207895589,0.835447006,neg,ns,0.003278067,0.001865238,1.757452675,0.079827719,pos,ns,1.097846282,-0.000155931,0.0000641,-2.430901883,0.015628045,neg,ns,0.903883856,Sox5,Sox5_Exon,6,143861481,143861530,143861481,143861482,50,-,CGAGCTTCTTGGATTGCCTTGGTGACAGCATCATGGTCATTTAAGTAACC,"Exon (Sox5-201/Sox5, exon 11 of 15)",6,143828425,144209480,381056,2,Sox5-201,347950,Sox5-201;Sox5-214;Sox5-205;Sox5-204;Sox5-202;Sox5-203;Sox5-209;Sox5-211;Sox5-206,Sox5;Sox5;Sox5;Sox5;Sox5;Sox5;Sox5;Sox5;Sox5,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,71,20678,ENSMUSG00000041540,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10385,cg25923093,-0.00000285,0.000000937,-3.045534353,0.00252204,loss,ns,0.000000331,0.00000159,0.207859889,0.835474857,pos,ns,-0.00000207,0.000466279,-0.004430232,0.996468047,neg,ns,0.001536623,0.000013,0.000016,0.809671524,0.418750031,pos,ns,0.026850072,Mxi1,Mxi1_Exon,19,53310867,53310916,53310915,53310916,50,+,CACCAGCGAGAACTCGATGGAGAAGCACATCAACACTTTTCTGCAGAACG,Promoter (<=1kb),19,53310518,53373293,62776,1,Mxi1-201,349,Mxi1-201;Mxi1-208,Mxi1;Mxi1,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,10,17859,ENSMUSG00000025025,conserved gene and region,19,53310521,53311073,553,*,553,59,0.692585895,0.901049434,0.106690778,8.68E-47,CpGisland,TRUE,U1,Pr-A
24827,cg12513264,0.0000122,0.0000077,1.589798125,0.112899596,gain,ns,-0.00000272,0.0000131,-0.207822663,0.835503899,neg,ns,0.002633438,0.003832269,0.687174631,0.492486441,pos,ns,0.307605722,-0.0000767,0.000131791,-0.58164329,0.561229679,neg,ns,0.832119859,Phc2,Phc2_Exon,4,128745008,128745057,128745008,128745009,50,-,CGCTCGTCCCTGCTGGTGGGGAATCTCAAGAAGAAGTATGCACAGGGGTT,"Exon (Phc2-201/Phc2, exon 11 of 15)",4,128654702,128752881,98180,1,Phc2-201,90306,Phc2-201;Phc2-203;Phc2-209;Phc2-202;Phc2-208;Phc2-205;Phc2-210;Phc2-204;Phc2-206,Phc2;Phc2;Phc2;Phc2;Phc2;Phc2;Phc2;Phc2;Phc2,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,13,54383,ENSMUSG00000028796,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8804,cg27290305,-0.00000583,0.00000498,-1.171323481,0.242368289,loss,ns,0.00000176,0.00000845,0.207775963,0.835540333,pos,ns,0.00586542,0.002476356,2.368569146,0.01846999,pos,ns,1.733533333,-0.00027306,0.0000852,-3.206372095,0.00148449,neg,ns,0.914946494,Oga,Oga_Intron,19,45763827,45763876,45763827,45763828,50,+,CGCTGTGAACATCTGCCGCTGTCCATCCAATAGTAGTAGACACTTGTGCT,"Intron (Oga-201/Oga, intron 10 of 15)",19,45750259,45783551,33293,2,Oga-201,19675,Oga-201;Oga-204;Oga-203;Oga-206;Oga-205,Oga;Oga;Oga;Oga;Oga,0;0;0;0;19900,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,21,76055,ENSMUSG00000025220,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1581,cg24241736,0.00000753,0.0000051,1.475712134,0.141036156,gain,ns,-0.0000018,0.00000867,-0.207707331,0.835593878,neg,ns,-0.002091883,0.002538898,-0.823933544,0.410610766,neg,ns,0.386569667,-0.0000746,0.0000873,-0.854629039,0.39341652,neg,ns,0.827336638,Zfp521,Zfp521_Intron,18,13790571,13790620,13790619,13790620,50,-,CACCTCAGTGCCTGCCTGGTTCCCTTCGGAAACTGTTGGCTCCACATACG,"Intron (Zfp521-201/Zfp521, intron 5 of 7)",18,13687013,13972787,285775,2,Zfp521-201,182167,Zfp521-201;Zfp521-205;Zfp521-204,Zfp521;Zfp521;Zfp521,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,81,225207,ENSMUSG00000024420,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19049,cg06282831,0.000017,0.00000515,3.303645914,0.001066094,gain,ns,-0.00000182,0.00000876,-0.207611573,0.835668586,neg,ns,-0.00400287,0.002565604,-1.560206023,0.119731469,neg,ns,0.921791688,0.000235246,0.0000882,2.666250136,0.008072592,pos,ns,0.471390637,Cdk12,Cdk12_Intergenic_downstream,11,98284405,98284454,98284453,98284454,50,-,GAGCAATCTCAGAGAGCAGTAAGGTGTGACGCGAGGCTCTGCCGGCTTCG,Distal Intergenic,11,98263502,98268011,4510,1,Cdk12-204,20952,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,25,69131,ENSMUSG00000003119,conserved gene but different region,11,98284434,98284521,88,*,88,9,0.647727273,1.012787724,0.102272727,0.000000303,CpGisland,TRUE,U11,Tr-P
19471,cg21858607,-0.0000685,0.0000116,-5.890251748,0.00000001,loss,yes,0.0000041,0.0000197,0.207598199,0.83567902,pos,ns,-0.008867589,0.005785713,-1.532670199,0.126377001,neg,ns,0.898331954,0.000138643,0.00019897,0.696803722,0.486447809,pos,ns,0.795108115,Foxp1,Foxp1_Intron,6,99389192,99389241,99389192,99389193,50,+,CGTCAACTGTCAGGGCCCTGGCTCCAATCGCCTTTCAAGTCCAAACAGGA,"Intron (Foxp1-204/Foxp1, intron 1 of 18)",6,98925342,99435345,510004,2,Foxp1-204,46104,Foxp1-204;Foxp1-220;Foxp1-221;Foxp1-222;Foxp1-224;Foxp1-227;Foxp1-219;Gm20696-201,Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Gm20696,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,87,108655,ENSMUSG00000030067,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U5,En-Sd
21589,cg24133132,0.00000235,0.0000047,0.49919185,0.617998303,gain,ns,-0.00000165,0.00000798,-0.207253793,0.835947733,neg,ns,-0.003067921,0.002339185,-1.311534421,0.190647784,neg,ns,0.719768239,0.0000231,0.0000804,0.286565276,0.77463663,pos,ns,0.924526725,Zfhx3,Zfhx3_Intron,8,108468017,108468066,108468065,108468066,50,-,TAAACTGTGACACAAAGATATTATACCGTTAGTTTACTAATGACACCGCG,"Intron (Zfhx3-204/Zfhx3, intron 3 of 15)",8,107942644,108961630,1018987,1,Zfhx3-204,525373,Zfhx3-204,Zfhx3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,114,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25671,cg15257945,-0.000000633,0.00000193,-0.32761077,0.743427112,loss,ns,-0.00000068,0.00000328,-0.20709765,0.836069565,neg,ns,0.000983918,0.00096167,1.023135434,0.307041556,pos,ns,0.512802842,-0.000041,0.0000331,-1.239487231,0.216102634,neg,ns,0.957150441,Eif4g3,Eif4g3_threeUTR,4,138206203,138206252,138206251,138206252,50,+,TAAAAAGTTTCACGTCTTCGCCAATCACAGTGCAGCAAGGCCAATTCTCG,3' UTR,4,137993022,138208508,215487,1,Eif4g3-203,213181,Eif4g3-203;Eif4g3-202;Eif4g3-205;Eif4g3-215;Eif4g3-212;Eif4g3-208;Eif4g3-213,Eif4g3;Eif4g3;Eif4g3;Eif4g3;Eif4g3;Eif4g3;Eif4g3,0;0;0;0;0;0;4614,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,10,230861,ENSMUSG00000028760,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3651,cg02762509,0.0000154,0.00000383,4.028470389,0.0000707,gain,ns,0.00000135,0.00000651,0.207092876,0.836073291,pos,ns,0.00352951,0.001907595,1.850241089,0.065230197,pos,ns,1.185551309,-0.0000266,0.0000656,-0.405434129,0.685438093,neg,ns,0.077407679,Erfl,Erfl_Promoter,7,24948999,24949048,24948999,24949000,50,+,CGGTGGAATTATGAAAAATAGCAGGCATCGGAGCCGGCCTTCAGCTTCGA,Promoter (4-5kb),7,24927445,24944494,17050,2,Erfl-201,-4505,Erfl-201,Erfl,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,29,36,,NA,mapped to different genes,7,24948874,24949205,332,*,332,30,0.545180723,1.304006284,0.090361446,9.36E-22,CpGisland,TRUE,U13,Hc-P
91,cg00750099,0.0000796,0.00000895,8.895180578,4.94E-17,gain,yes,-0.00000315,0.0000152,-0.207091502,0.836074362,neg,ns,0.004178492,0.004455825,0.9377594,0.34909809,pos,ns,0.457052527,0.000436417,0.000153235,2.848013753,0.004693244,pos,ns,0.103574935,Pomc,Pomc_Exon,12,3960115,3960164,3960115,3960116,50,+,CGCGAGGGCAAGCGCTCCTACTCCATGGAGCACTTCCGCTGGGGCAAGCC,"Exon (Pomc-204/Pomc, exon 4 of 4)",12,3954951,3960573,5623,1,Pomc-204,5164,Efr3b-201;Efr3b-203;Pomc-204;Pomc-202;Pomc-201;Pomc-203;Pomc-205,Efr3b;Efr3b;Pomc;Pomc;Pomc;Pomc;Pomc,78751;32756;0;0;0;5146;5145,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,18976,ENSMUSG00000020660,conserved gene and region,12,3959827,3960450,624,*,624,52,0.637820513,0.822884967,0.083333333,2.11E-35,CpGisland,TRUE,U4,Pr-F
9662,cg25594894,-0.0000197,0.00000749,-2.630601905,0.008949135,loss,ns,-0.00000263,0.0000127,-0.207062006,0.836097378,neg,ns,-0.006092858,0.003727297,-1.634658491,0.103135676,neg,ns,0.986591081,-0.000169085,0.000128181,-1.319103238,0.188108121,neg,ns,0.841574485,Grin3a,Grin3a_Exon,4,49770744,49770793,49770792,49770793,50,-,GTCCAGTGGAGTGGCCACATGAAGGCTCCAATGGGAGCTGCTGTATCTCG,"Exon (Grin3a-201/Grin3a, exon 3 of 9)",4,49661611,49845549,183939,2,Grin3a-201,74756,Grin3a-201;Grin3a-202;Grin3a-203,Grin3a;Grin3a;Grin3a,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,242443,ENSMUSG00000039579,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16251,cg15966286,0.0000536,0.0000112,4.788670535,0.00000261,gain,ns,-0.00000394,0.000019,-0.207035477,0.836118078,neg,ns,0.010152841,0.005568847,1.823149579,0.06924372,pos,ns,1.159619606,-0.000175652,0.000191512,-0.917183446,0.359759508,neg,ns,0.361733986,Bnc2,Bnc2_Intron,4,84672335,84672384,84672335,84672336,50,-,CGTGTGGAGAACTAAGCAGACCTGTTCTTCATTAACTGCGGCTCTCTGGG,"Intron (Bnc2-201/Bnc2, intron 1 of 7)",4,84275095,84675034,399940,2,Bnc2-201,2650,Bnc2-201;Bnc2-202;Bnc2-214;Bnc2-215;Bnc2-206;Bnc2-211;Bnc2-217;Bnc2-207;Bnc2-203;Bnc2-209;Bnc2-204;Bnc2-210,Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,91,242509,ENSMUSG00000028487,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
14017,cg15195246,-0.000000219,0.000000339,-0.647960302,0.517490237,loss,ns,0.000000119,0.000000575,0.206980282,0.836161146,pos,ns,0.000428703,0.000168498,2.544260769,0.011435868,pos,ns,1.941730848,-0.0000137,0.00000579,-2.367442397,0.018525295,neg,ns,0.008829901,Arpc2,Arpc2_fiveUTR,1,74236819,74236868,74236819,74236820,50,+,CGCCGCCATGATCCTGCTGGAGGTGAACAACCGCATCATCGAGGAGACGC,Promoter (<=1kb),1,74236084,74236888,805,1,Arpc2-204,735,Arpc2-204;Arpc2-203;Arpc2-201;Arpc2-202,Arpc2;Arpc2;Arpc2;Arpc2,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,6,76709,ENSMUSG00000006304,conserved gene and region,1,74236248,74237193,946,*,946,100,0.695560254,0.886431784,0.105708245,2.03E-78,CpGisland,TRUE,U1,Pr-A
25465,cg13267043,0.00000514,0.00000564,0.910742495,0.363138679,gain,ns,0.00000198,0.00000958,0.206928859,0.836201271,pos,ns,0.00369721,0.002806554,1.317348836,0.188694553,pos,ns,0.724240635,-0.000153451,0.0000965,-1.589880229,0.112881079,neg,ns,0.919347849,Glra4,Glra4_Exon,X,136772719,136772768,136772767,136772768,50,-,TTACCTGTGTTGTAGTGCTTGGTACAACAGCCTAGATCCTTCTCATCCCG,"Exon (Glra4-201/Glra4, exon 6 of 9)",20,136757674,136780141,22468,2,Glra4-201,7373,Glra4-201;Glra4-202,Glra4;Glra4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,14657,ENSMUSG00000018595,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24478,cg14941905,0.0000244,0.00000481,5.074172896,0.000000672,gain,yes,-0.00000169,0.00000817,-0.20691752,0.836210119,neg,ns,0.00313205,0.002392536,1.309091981,0.191472716,pos,ns,0.717893101,-0.0000848,0.0000823,-1.030116697,0.303758258,neg,ns,0.887012917,Atxn2l,Atxn2l_threeUTR,7,126492581,126492630,126492629,126492630,50,-,CGACTGTGGCTTCTGCCCACCCTACATACTTCACAGACAGGTGCAGGTCG,3' UTR,7,126491708,126503437,11730,2,Atxn2l-201,10807,Atxn2l-201;Atxn2l-203;Atxn2l-206;Atxn2l-205;Atxn2l-202;Tufm-201;Tufm-202;Tufm-203;Tufm-204;Tufm-205;Tufm-206,Atxn2l;Atxn2l;Atxn2l;Atxn2l;Atxn2l;Tufm;Tufm;Tufm;Tufm;Tufm;Tufm,0;0;0;0;0;5220;5203;4952;3967;3895;3210,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,8,13,233871,ENSMUSG00000032637,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9445,cg00806006,0.0000225,0.0000108,2.094645581,0.037013996,gain,ns,-0.00000378,0.0000183,-0.206809403,0.836294484,neg,ns,0.002803873,0.00535216,0.523876834,0.600738536,pos,ns,0.221314508,0.000140235,0.00018406,0.76189801,0.446700135,pos,ns,0.923516153,Zbtb16,Zbtb16_Intron,9,48758090,48758139,48758138,48758139,50,+,ATTTATGTCAACAGCGCATATGTTGAACACCTCATTTCTGAGCTAAAGCG,"Intron (Zbtb16-201/Zbtb16, intron 2 of 6)",9,48654297,48835945,181649,2,Zbtb16-201,77806,Zbtb16-201;Zbtb16-202,Zbtb16;Zbtb16,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,37,235320,ENSMUSG00000066687,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2132,cg09357380,0.00000408,0.00000198,2.065380478,0.039717947,gain,ns,0.000000695,0.00000336,0.206741978,0.836347098,pos,ns,0.000929556,0.000984251,0.944430059,0.345685417,pos,ns,0.461318941,-0.000000386,0.0000338,-0.011409092,0.990904398,neg,ns,0.02104822,Bhlhe22,Bhlhe22_fiveUTR,3,18054395,18054444,18054443,18054444,50,+,ATGATGTAAAAGACTCCCCCGTCTGTGGCGGCGGCTGTTTGATGGGTCCG,Promoter (<=1kb),3,18054174,18057517,3344,1,Bhlhe22-201,221,Bhlhe22-201,Bhlhe22,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,9,22,59058,ENSMUSG00000025128,conserved gene and region,3,18054414,18055574,1161,*,1161,142,0.711455642,0.972379014,0.122308355,3.49E-121,CpGisland,TRUE,U3,Pr-B
3628,cg19438817,-0.00000559,0.00000192,-2.902734487,0.003964454,loss,ns,-0.000000675,0.00000327,-0.206583881,0.836470468,neg,ns,-0.00038249,0.000957715,-0.399378178,0.689889574,neg,ns,0.161220418,-0.000015,0.0000329,-0.455341714,0.649182172,neg,ns,0.958836986,Gm12067,Gm12067_Intergenic_upstream,11,24829952,24830001,24829952,24829953,50,+,CGTAATTATTTGCCATCAAAGCACATTCATATTGTGGCACAAAAGAAGGG,Distal Intergenic,11,24552438,24553962,1525,2,Gm12067-201,-275990,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,26,58,100417843,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1378,cg07775532,0.00000191,0.00000702,0.2722483,0.785612346,gain,ns,-0.00000246,0.0000119,-0.206475674,0.836554908,neg,ns,0.001965917,0.003491951,0.562985408,0.57385176,pos,ns,0.241200282,0.0000971,0.000120088,0.808354166,0.419506624,pos,ns,0.669114455,Cadps,Cadps_threeUTR,14,12486524,12486573,12486524,12486525,50,-,CGAATGGTTAAATCCATCACTTGGGAGGCCAAGCAGAAGACAGGATGCTC,3' UTR,14,12372563,12823053,450491,2,Cadps-210,336480,Cadps-210;Cadps-202;Cadps-203;Cadps-204;Cadps-201;Cadps-208;Cadps-206,Cadps;Cadps;Cadps;Cadps;Cadps;Cadps;Cadps,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,8,34,27062,ENSMUSG00000054423,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27526,cg09715291,-0.00000136,0.00000487,-0.278660766,0.780690965,loss,ns,-0.00000171,0.00000827,-0.206347296,0.836655093,neg,ns,-0.000374987,0.002423575,-0.154724722,0.877139027,neg,ns,0.056931565,-0.0000504,0.0000833,-0.604496005,0.545956092,neg,ns,0.91890814,Zfp64,Zfp64_Intergenic_upstream,2,169078340,169078389,169078340,169078341,50,-,CGTGACTGCACCATTAGGTTTGATGAATCCATATAATTGCTGCACAAATA,Distal Intergenic,2,168893331,168955587,62257,2,Zfp64-203,-122802,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,11,22722,ENSMUSG00000027551,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16335,cg25872155,0.000148162,0.00000934,15.85551918,7.13E-42,gain,yes,-0.00000328,0.0000159,-0.206345671,0.836656361,neg,ns,0.000487699,0.004650865,0.104861918,0.916553191,pos,ns,0.037842326,0.000000463,0.000159943,0.002895843,0.997691317,pos,ns,0.239078031,Rfx4,Rfx4_Promoter,10,84756001,84756050,84756049,84756050,50,+,GGCTTTTCTTATTCAAAACAGGCCCACAATGGGCTTCACAGTGCGCCTCG,Promoter (<=1kb),10,84756062,84906144,150083,1,Rfx4-202,-12,Rfx4-202,Rfx4,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,13,71137,ENSMUSG00000020037,mapped to different genes,10,84756044,84756276,233,*,233,17,0.557939914,1.02510352,0.072961373,5.60E-11,CpGisland,TRUE,U13,Hc-P
16885,cg12201163,0.00000261,0.00000346,0.754838993,0.450918659,gain,ns,0.00000121,0.00000588,0.206250519,0.836730618,pos,ns,0.000347662,0.001721256,0.201981347,0.840063788,pos,ns,0.075687736,0.0000655,0.0000592,1.106290815,0.269458427,pos,ns,0.932072662,Diaph3,Diaph3_Exon,14,86985992,86986041,86986040,86986041,50,-,TAAGGAGACTGCAGGGCACTTACTGGCAATATCTCTTTCAATCCACAACG,"Exon (Diaph3-201/Diaph3, exon 10 of 28)",14,86655367,87141224,485858,2,Diaph3-201,155183,Diaph3-201;Diaph3-202;Diaph3-208;Diaph3-205;Diaph3-209,Diaph3;Diaph3;Diaph3;Diaph3;Diaph3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,11,56419,ENSMUSG00000022021,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23878,cg07857147,0.00000548,0.00000556,0.985541995,0.325126485,gain,ns,-0.00000195,0.00000944,-0.2062342,0.836743353,neg,ns,0.009424247,0.002765979,3.407201515,0.000742943,pos,ns,3.129044543,-0.000289049,0.0000951,-3.038724178,0.002578039,neg,ns,0.89428729,Nfyc,Nfyc_Exon,4,120772630,120772679,120772630,120772631,50,-,CGACTGAAAGCTCCTCTGAACACCTTACAGCTTCCAGTCAAGGATGTTTA,"Exon (Mir30f-201/Mir30f-201, exon 1 of 1)",4,120757438,120815712,58275,2,Nfyc-204,43033,Nfyc-204;Nfyc-201;Nfyc-203;Nfyc-202;Nfyc-210;Nfyc-206;Nfyc-207,Nfyc;Nfyc;Nfyc;Nfyc;Nfyc;Nfyc;Nfyc,0;0;0;0;-4413;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,4,18046,ENSMUSG00000032897,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21334,cg00153046,-0.000071,0.00000494,-14.35663633,3.46E-36,loss,yes,-0.00000173,0.0000084,-0.206168596,0.836794552,neg,ns,-0.001462228,0.002460461,-0.59429028,0.552751432,neg,ns,0.257470124,-0.000279024,0.0000846,-3.297564948,0.00108864,neg,ns,0.890969214,Nfat5,Nfat5_threeUTR,8,107372970,107373019,107372970,107372971,50,-,CGTTCAAGTTTTGGATGGTTTATATCTAATGTGTGTTTCATTTTTTTGGA,3' UTR,8,107293470,107379516,86047,1,Nfat5-214,79500,Nfat5-213;Nfat5-214;Nfat5-206;Nfat5-211;Nfat5-203;Nfat5-201;Nfat5-202;Nfat5-207;Nfat5-208,Nfat5;Nfat5;Nfat5;Nfat5;Nfat5;Nfat5;Nfat5;Nfat5;Nfat5,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,13,17,54446,ENSMUSG00000003847,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3656,cg11447156,0.0000167,0.00000936,1.78113279,0.075869813,gain,ns,0.00000328,0.0000159,0.206134225,0.836821376,pos,ns,0.003905485,0.004657339,0.838565782,0.402359144,pos,ns,0.395386125,0.0000927,0.000160165,0.578637878,0.563253695,pos,ns,0.137652878,Erfl,Erfl_Promoter,7,24949204,24949253,24949204,24949205,50,-,CGGCAATTTGACATCAGGGGTAGTTAATTCCACTCAGAATAAAATTGAAA,Promoter (4-5kb),7,24927445,24944494,17050,2,Erfl-201,-4759,Erfl-201,Erfl,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,29,36,,NA,mapped to different genes,7,24948874,24949205,332,*,332,30,0.545180723,1.304006284,0.090361446,9.36E-22,CpGisland,TRUE,U13,Hc-P
366,cg14070880,0.00000118,0.00000218,0.542738994,0.587699503,gain,ns,-0.000000764,0.00000371,-0.206060403,0.83687899,neg,ns,0.001039284,0.001085832,0.957131684,0.339246623,pos,ns,0.469484467,-0.0000547,0.0000373,-1.46531362,0.143848854,neg,ns,0.957958567,Zfhx4,Zfhx4_Exon,3,5242568,5242617,5242616,5242617,50,-,TCTTTTGGTTATATCAGGTCATTTGTAACCCATGCTGTGCATGATCATCG,"Exon (Zfhx4-203/Zfhx4, exon 2 of 11)",3,5218526,5413165,194640,1,Zfhx4-203,24042,Zfhx4-203;Zfhx4-202;Zfhx4-201;Zfhx4-204;Zfhx4-205,Zfhx4;Zfhx4;Zfhx4;Zfhx4;Zfhx4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,23,77,80892,ENSMUSG00000025255,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19755,cg23693668,-0.0000307,0.0000095,-3.235409542,0.001345912,loss,ns,0.00000333,0.0000161,0.206055449,0.836882856,pos,ns,-0.004381699,0.004727468,-0.926859513,0.354720508,neg,ns,0.450113703,-0.000225476,0.000162577,-1.386884104,0.166473518,neg,ns,0.633922614,Gpat3,Gpat3_Intergenic_downstream,5,101032666,101032715,101032666,101032667,50,-,CGCCAGGGAGGCCAGGAATATGCTAGAAGTGTACAGTTATTTCCCCATAA,Distal Intergenic,5,100846417,100846850,434,1,Gpat3-205,186298,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,15,15,231510,ENSMUSG00000029314,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14357,cg13967780,-0.00000286,0.00000137,-2.091438129,0.037302451,loss,ns,0.000000479,0.00000232,0.205952168,0.836963461,pos,ns,0.000639942,0.000680684,0.940146006,0.347874653,pos,ns,0.458577214,-0.00000734,0.0000234,-0.313465457,0.754137868,neg,ns,0.043344192,Smad7,Smad7_fiveUTR,18,75368879,75368928,75368927,75368928,50,-,GACTTCTTCATGGTGTGCGGAGGTCATGTTCGCTCCTTAGCAGGCAAACG,Promoter (<=1kb),18,75368883,75395479,26597,1,Smad7-202,0,Smad7-201;Smad7-202;Smad7-205;Smad7-204,Smad7;Smad7;Smad7;Smad7,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,19,17131,ENSMUSG00000025880,conserved gene and region,18,75368486,75369554,1069,*,1069,115,0.705332086,0.865343329,0.107577175,4.83E-91,CpGisland,TRUE,U1,Pr-A
17505,cg15201218,-0.0000267,0.0000167,-1.602341383,0.11009856,loss,ns,0.00000584,0.0000283,0.205935102,0.836976781,pos,ns,-0.002517457,0.00830167,-0.303247111,0.761904955,neg,ns,0.118099202,-0.000319817,0.000285494,-1.120225861,0.263484649,neg,ns,0.346923067,Anks1b,Anks1b_fiveUTR,10,90576960,90577009,90576960,90576961,50,-,CGGGCTCCTTTGATAGCAACTTTCCCAGGGGCATGATGTGGCAATGCCAC,Promoter (<=1kb),10,90576965,90970219,393255,1,Anks1b-217,0,Anks1b-233;Anks1b-222;Anks1b-203;Anks1b-214;Anks1b-215;Anks1b-208;Anks1b-210;Anks1b-221;Anks1b-219;Anks1b-213;Anks1b-216;Anks1b-224;Anks1b-206;Anks1b-207;Anks1b-209;Anks1b-231;Anks1b-218;Anks1b-217;Anks1b-201,Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,9,14,77531,ENSMUSG00000058589,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7726,cg23085204,-0.00000387,0.00000481,-0.805534693,0.421128632,loss,ns,0.00000168,0.00000816,0.205840529,0.837050592,pos,ns,0.0000581,0.002391572,0.024281341,0.980643819,pos,ns,0.008488705,-0.0000771,0.0000822,-0.937353041,0.349306673,neg,ns,0.907807532,Tpp2,Tpp2_Exon,1,43985386,43985435,43985434,43985435,50,+,TTTCTTACAGAATGTCGTTCTAACTCCCAGGGGCAGTCTGCAGCAAAACG,"Exon (Tpp2-201/Tpp2, exon 24 of 30)",1,43934007,44002971,68965,1,Tpp2-201,51379,Tpp2-201;Tpp2-207;Tpp2-206;Tpp2-208;Tpp2-209,Tpp2;Tpp2;Tpp2;Tpp2;Tpp2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,22019,ENSMUSG00000041763,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3645,cg24203137,0.0000865,0.0000107,8.051946511,1.76E-14,gain,yes,-0.00000376,0.0000183,-0.205824871,0.837062813,neg,ns,0.023271773,0.00534769,4.351743356,0.0000184,pos,ns,4.736128724,-0.000634685,0.000183907,-3.451129103,0.000635702,neg,ns,0.160605596,Erfl,Erfl_Intron,7,24943242,24943291,24943290,24943291,50,-,TTCCCTTTGTTGCCAGAAAATTCGATCCTGGGCCTGGAATTAGGTCCCCG,"Intron (Erfl-201/Erfl, intron 1 of 5)",7,24927445,24944494,17050,2,Erfl-201,1203,Erfl-201,Erfl,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,36,,NA,mapped to different genes,7,24943025,24943315,291,*,291,30,0.656357388,0.97129506,0.103092784,1.48E-23,CpGisland,TRUE,U13,Hc-P
23403,cg18448622,-0.0000219,0.00000549,-3.998206583,0.0000798,loss,ns,-0.00000192,0.00000932,-0.205805628,0.837077831,neg,ns,-0.001375538,0.002730178,-0.503827237,0.614740638,neg,ns,0.211308076,-0.000077,0.0000939,-0.820027177,0.412830668,neg,ns,0.918818223,Ptprf,Ptprf_Intron,4,118256556,118256605,118256604,118256605,50,+,TTTAATTAAATTAAATGAGCTAACACTTCGTGGGCTGTCTCAGGCGGCCG,"Intron (Ptprf-201/Ptprf, intron 6 of 32)",4,118208213,118291405,83193,2,Ptprf-201,34800,Ptprf-201;Ptprf-207,Ptprf;Ptprf,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,9,19268,ENSMUSG00000033295,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19664,cg14867020,-0.00000366,0.00000857,-0.426413959,0.67010218,loss,ns,-0.000003,0.0000146,-0.205790909,0.837089319,neg,ns,0.000572344,0.004267726,0.134109813,0.893402764,pos,ns,0.048952708,-0.000136219,0.000146767,-0.928135005,0.354059626,neg,ns,0.87386218,Eda,Eda_Exon,X,100395095,100395144,100395095,100395096,50,+,CGGGGAGCTGGAGGTACTGGTGGACGGCACCTACTTCATCTATAGTCAGG,"Exon (Eda-208/Eda, exon 6 of 7)",20,99975606,100400759,425154,1,Eda-208,419489,Eda-208;Eda-209;Eda-202;Eda-203;Eda-206;Eda-205;Eda-207;Eda-204;Eda-201;Eda-212;Eda-210,Eda;Eda;Eda;Eda;Eda;Eda;Eda;Eda;Eda;Eda;Eda,0;0;0;0;0;0;0;0;0;9952;7840,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,9,13607,ENSMUSG00000059327,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23151,cg14146864,-0.0000552,0.00000743,-7.432574385,1.05E-12,loss,yes,0.00000259,0.0000126,0.205558722,0.837270542,pos,ns,-0.015601497,0.003697474,-4.219501426,0.0000322,neg,ns,4.492279716,0.000223106,0.000127156,1.754590289,0.080317362,pos,ns,0.691946629,Rnf220,Rnf220_Intron,4,117359980,117360029,117360028,117360029,50,-,GCCGAGCACAGCTTTTTCCACTTAATAAGCAGAGTGCTGACTTCATTGCG,"Intron (Rnf220-201/Rnf220, intron 2 of 14)",4,117271463,117497052,225590,2,Rnf220-201,137023,Rnf220-201;Rnf220-202;Rnf220-207,Rnf220;Rnf220;Rnf220,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8278,cg14140197,-0.000000426,0.00000026,-1.637850648,0.102467442,loss,ns,-9.07E-08,0.000000442,-0.20546744,0.837341791,neg,ns,0.000199466,0.000129382,1.541679684,0.124171589,pos,ns,0.905977762,-0.00000656,0.00000445,-1.474143116,0.141457818,neg,ns,0.006655195,Slf2,Slf2_fiveUTR,19,44931301,44931350,44931301,44931302,50,-,CGGCGCCGACATGACAAGGCGCTGCATGCCCGCTAGGCCAGGTTTCCCCT,Promoter (<=1kb),19,44931151,44983188,52038,1,Slf2-201,150,Slf2-201;Slf2-204;Slf2-203,Slf2;Slf2;Slf2,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,17,226151,ENSMUSG00000036097,conserved gene and region,19,44931025,44931421,397,*,397,34,0.672544081,0.793533216,0.085642317,9.01E-24,CpGisland,TRUE,U1,Pr-A
27856,cg04864747,-0.0000138,0.0000052,-2.659197571,0.008239616,loss,ns,0.00000181,0.00000883,0.205413902,0.837383579,pos,ns,0.00000471,0.002586851,0.001821138,0.998548114,pos,ns,0.000631004,0.0000265,0.000089,0.298009662,0.76589542,pos,ns,0.560537193,Ush2a,Ush2a_Intron,1,188656431,188656480,188656479,188656480,50,+,TCAGAACCCATTTACCGAACAGCCCTTGTAGAAAATGTATTCTGTTCTCG,"Intron (Ush2a-201/Ush2a, intron 36 of 70)",1,188263034,188965041,702008,1,Ush2a-201,393397,Ush2a-201;Ush2a-204,Ush2a;Ush2a,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,33,36,22283,ENSMUSG00000026609,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3375,cg05370805,-0.00000392,0.00000143,-2.746030736,0.006384487,loss,ns,-0.000000497,0.00000242,-0.205373546,0.837415079,neg,ns,0.000475137,0.00070966,0.669526904,0.503657778,pos,ns,0.297864455,-0.0000354,0.0000244,-1.448634577,0.148450375,neg,ns,0.054782012,Smap1,Smap1_Exon,1,23922088,23922137,23922136,23922137,50,+,TTGGATAGGATGAGCTGGTGCTGCTCGTTCAGCTTCTGAGCCTTCTCCCG,Promoter (<=1kb),1,23845625,23922317,76693,2,Smap1-201,180,Smap1-201,Smap1,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,98366,ENSMUSG00000026155,conserved gene and region,1,23922113,23922554,442,*,442,72,0.7760181,1.092107069,0.162895928,1.74E-72,CpGisland,TRUE,U1,Pr-A
877,cg08493888,-0.0000102,0.00000317,-3.229257256,0.001374231,loss,ns,0.0000011,0.00000538,0.205347806,0.837435171,pos,ns,-0.002495789,0.001575318,-1.584308154,0.114143184,neg,ns,0.942550018,0.00000447,0.0000542,0.082427039,0.934360331,pos,ns,0.931176307,Clvs1,Clvs1_Exon,4,9281798,9281847,9281798,9281799,50,+,CGAGCCAGGAAGTTTCACCAAGCGGATGCCTTTAGACTCCTGGCTCAGTA,"Exon (Clvs1-208/Clvs1, exon 2 of 2)",4,9269293,9282272,12980,1,Clvs1-208,12505,Clvs1-208;Clvs1-203;Clvs1-201;Clvs1-207;Clvs1-206;Clvs1-202,Clvs1;Clvs1;Clvs1;Clvs1;Clvs1;Clvs1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,74438,ENSMUSG00000041216,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3595,cg17657744,-0.00000539,0.00000341,-1.578440476,0.115484284,loss,ns,0.00000119,0.0000058,0.205262815,0.837501511,pos,ns,-0.0000546,0.001698775,-0.032143819,0.974378045,neg,ns,0.01127251,-0.000115342,0.0000584,-1.974333518,0.049231178,neg,ns,0.914387133,Klhl32,Klhl32_Exon,4,24649731,24649780,24649731,24649732,50,+,CGGCAGTTTTTCATGGGTGCTATCTCTGCCCAGGAATTACTGCGGGGGTC,"Exon (Klhl32-204/Klhl32, exon 7 of 11)",4,24612554,24800890,188337,2,Klhl32-203,151110,Klhl32-203;Klhl32-204;Klhl32-207;Klhl32-205;Klhl32-201;Klhl32-202;Klhl32-206,Klhl32;Klhl32;Klhl32;Klhl32;Klhl32;Klhl32;Klhl32,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,10,212390,ENSMUSG00000040387,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17839,cg24303809,-0.00000211,0.00000319,-0.661886972,0.508535365,loss,ns,0.00000111,0.00000541,0.205237645,0.837521158,pos,ns,-0.00043395,0.001586191,-0.273580075,0.784589532,neg,ns,0.105357491,-0.0000176,0.0000545,-0.32177606,0.747839216,neg,ns,0.901250288,Hdac4,Hdac4_Exon,1,92012764,92012813,92012764,92012765,50,+,CGCTGGTGTTCCAGCAGCTCCTGCTGGTGCTTCATGGCCAGCATCTCCTG,"Exon (Hdac4-202/Hdac4, exon 5 of 27)",1,91928779,92180341,251563,2,Hdac4-202,167528,Hdac4-202;Hdac4-201,Hdac4;Hdac4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,3,208727,ENSMUSG00000026313,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25886,cg23751724,0.000018,0.00000495,3.631974164,0.000329013,gain,ns,0.00000173,0.00000841,0.2052019,0.83754906,pos,ns,0.008109797,0.00246477,3.29028577,0.001116212,pos,ns,2.95225315,-0.000280436,0.0000848,-3.308461204,0.001048548,neg,ns,0.084034616,Macrod2,Macrod2_fiveUTR,2,140395669,140395718,140395669,140395670,50,-,CGGCAACATGTACCCCAGCAACAAGAAGAAAAAGGTGTGGAGAGAGGAGA,Promoter (<=1kb),2,140395309,142392966,1997658,1,Macrod2-207,360,Macrod2-207;Macrod2-205;Macrod2-206;Macrod2-204;Macrod2-209;Macrod2-201;Macrod2-202;Macrod2-212;Macrod2-213;Macrod2-208;Macrod2-203,Macrod2;Macrod2;Macrod2;Macrod2;Macrod2;Macrod2;Macrod2;Macrod2;Macrod2;Macrod2;Macrod2,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,5,72899,ENSMUSG00000068205,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
24194,cg24635672,-0.0000029,0.00000172,-1.683955721,0.093196809,loss,ns,0.0000006,0.00000292,0.205199669,0.837550802,pos,ns,0.002311462,0.00085595,2.700462296,0.007304796,pos,ns,2.136391902,-0.000048,0.0000294,-1.631897965,0.103716357,neg,ns,0.087998299,Tmem158,Tmem158_Exon,9,123259862,123259911,123259862,123259863,50,-,CGGCCAGATGAGGGCGGCCACGCTCCACACCACGATGACCAGGGTCATGA,Promoter (<=1kb),9,123259053,123260764,1712,2,Tmem158-201,853,Tmem158-201,Tmem158,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,72309,ENSMUSG00000054871,conserved gene and region,9,123259568,123259967,400,*,400,46,0.71,0.919080919,0.115,2.99E-38,CpGisland,TRUE,U3,Pr-B
24729,cg11062704,0.000019,0.00000404,4.703623376,0.00000385,gain,ns,-0.00000141,0.00000686,-0.205180492,0.837565771,neg,ns,0.003802217,0.002009804,1.891834498,0.059444864,pos,ns,1.225885664,-0.0000312,0.0000691,-0.45086457,0.652402356,neg,ns,0.065965978,Csmd2,Csmd2_Exon,4,127987869,127987918,127987869,127987870,50,-,CGCCTCTCCCCGGCCGGGCGGACACTTGGTTCATTCCAGCCGCAGAAGCT,Promoter (<=1kb),4,127987857,128339657,351801,1,Csmd2-201,12,Csmd2-201;Csmd2-203;Csmd2-205,Csmd2;Csmd2;Csmd2,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,9,329942,ENSMUSG00000028804,conserved gene but different region,4,127987731,127987958,228,*,228,26,0.679824561,1.009193054,0.114035088,1.06E-21,CpGisland,TRUE,U13,Hc-P
27495,cg15074930,0.00000506,0.00000211,2.400518563,0.016961066,gain,ns,-0.000000735,0.00000358,-0.205154461,0.83758609,neg,ns,0.000961369,0.001049363,0.916145186,0.360302874,pos,ns,0.443332274,-0.0000647,0.0000361,-1.791835532,0.074134501,neg,ns,0.028111011,Pbx1,Pbx1_fiveUTR,1,168432103,168432152,168432103,168432104,50,-,CGTGTCTCTGCAAACTCCAGCAGCCCCGTCAGCCTCCTGCTTTTGTTTAG,Promoter (<=1kb),1,168119364,168432270,312907,2,Pbx1-208,118,Pbx1-208;Pbx1-205;Pbx1-206;Pbx1-201;Pbx1-202;Pbx1-204;Pbx1-207,Pbx1;Pbx1;Pbx1;Pbx1;Pbx1;Pbx1;Pbx1,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,84,18514,ENSMUSG00000052534,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
14454,cg16701420,-0.00000232,0.000000822,-2.823655386,0.005055259,loss,ns,-0.000000287,0.0000014,-0.205099748,0.837628799,neg,ns,-0.000261048,0.00040929,-0.637808393,0.524069237,neg,ns,0.280611333,-0.0000233,0.0000141,-1.652259085,0.099494197,neg,ns,0.016072419,Ywhae,Ywhae_fiveUTR,11,75733011,75733060,75733059,75733060,50,-,CCGGAGCCGCTGCCGCTATGGATGATCGAGAGGATCTGGTGTACCAGGCG,Promoter (<=1kb),11,75732869,75765845,32977,1,Ywhae-201,142,Ywhae-201;Ywhae-203;Ywhae-204;Ywhae-202,Ywhae;Ywhae;Ywhae;Ywhae,0;0;0;-88,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,9,9,22627,ENSMUSG00000020849,conserved gene and region,11,75732561,75733672,1112,*,1112,119,0.701438849,0.881745794,0.107014389,6.96E-94,CpGisland,TRUE,U1,Pr-A
16259,cg01061575,0.0000921,0.00000733,12.56082189,1.57E-29,gain,yes,0.00000255,0.0000125,0.205017266,0.837693184,pos,ns,0.019611946,0.003649925,5.373245678,0.000000152,pos,ns,6.817576475,-0.000291608,0.000125521,-2.323191618,0.020815631,neg,ns,0.113733501,Prr5,Prr5_fiveUTR,15,84681195,84681244,84681195,84681196,50,+,CGCAGGTTGAAGTTCATGAGTTCGCCCAGCCTCAGTGACCTGGGCAAGAG,5' UTR,15,84669620,84703673,34054,1,Prr5-202,11575,Prr5-202;Prr5-201,Prr5;Prr5,0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,2,109270,ENSMUSG00000036106,mapped to different genes,15,84680905,84681714,810,*,810,95,0.745679012,0.845279288,0.117283951,2.56E-79,CpGisland,TRUE,U1,Pr-A
12712,cg21598510,-0.0000167,0.00000461,-3.626390434,0.000335908,loss,ns,-0.00000161,0.00000784,-0.204990049,0.83771443,neg,ns,-0.001444252,0.002295583,-0.629143933,0.529718171,neg,ns,0.275955129,-0.0000324,0.0000789,-0.410648358,0.681614091,neg,ns,0.906393862,Gm43516,Gm43516_Intergenic_upstream,3,66935610,66935659,66935610,66935611,50,+,CGCTGCTTCAGGGAGACAAATTGCTCGTCTGGACATGGGTAACAAGCCAA,Distal Intergenic,3,66953541,66953862,322,1,Gm43516-201,-17882,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,11,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1666,cg05324472,0.00023257,0.0000238,9.778830798,7.36E-20,gain,yes,-0.00000828,0.0000404,-0.204988543,0.837715606,neg,ns,0.035393661,0.011837026,2.990080547,0.003012452,pos,ns,2.52107986,-0.00013611,0.000407074,-0.334360445,0.738333679,neg,ns,0.223932312,Lratd1,Lratd1_Exon,12,14150226,14150275,14150274,14150275,50,-,ACAGGCTGTCCTGGCGGATCTCGCCTTGGTGCAGGTGGATGATCTGCCCG,"Exon (Lratd1-201/Lratd1, exon 2 of 2)",12,14146830,14152054,5225,2,Lratd1-201,1779,Lratd1-201;Lratd1-202,Lratd1;Lratd1,0;1074,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,105005,ENSMUSG00000020607,conserved gene and region,12,14150008,14150517,510,*,510,49,0.674509804,0.844970414,0.096078431,1.49E-36,CpGisland,TRUE,U3,Pr-B
21263,cg22848871,-0.00000133,0.000000667,-1.997911924,0.04659961,loss,ns,0.000000232,0.00000113,0.204983994,0.837719157,pos,ns,0.000697369,0.000332127,2.099706999,0.036562691,pos,ns,1.436961847,-0.0000181,0.0000114,-1.588831423,0.113117791,neg,ns,0.976114901,Ssbp3,Ssbp3_Intron,4,107025562,107025611,107025562,107025563,50,-,CGCTAAACAAATGCTTGCAAAATTGCTAAATGGCTAATTAATGTCTGTTA,"Intron (Ssbp3-216/Ssbp3, intron 5 of 8)",4,106910701,107031069,120369,1,Ssbp3-216,114861,Ssbp3-216;Ssbp3-201;Ssbp3-215;Ssbp3-202;Ssbp3-203;Ssbp3-213;Ssbp3-214;Ssbp3-211;Ssbp3-212;Ssbp3-204;Ssbp3-206;Ssbp3-210,Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,18,72475,ENSMUSG00000061887,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24523,cg11948733,-0.0000674,0.0000118,-5.704965674,2.72E-08,loss,yes,-0.00000411,0.0000201,-0.204918773,0.83777007,neg,ns,0.012501672,0.00588039,2.12599369,0.03429386,pos,ns,1.464783625,-0.0011606,0.000202226,-5.739118629,2.27E-08,neg,yes,0.848320594,Ypel3,Ypel3_fiveUTR,7,126777833,126777882,126777833,126777834,50,+,CGCCATGGTGCGGATTTCAAAGCCCAAGACGTTTCAGGCCTACTTGGATG,Promoter (<=1kb),7,126776955,126780514,3560,1,Ypel3-201,878,Gdpd3-201;Gdpd3-203;Tbx6-202;Tbx6-201;Ypel3-201;Ypel3-210;Ypel3-204;Ypel3-209;Ypel3-211;Ypel3-203;Ypel3-207;Ypel3-205;Ypel3-202;Ypel3-208;Ypel3-206,Gdpd3;Gdpd3;Tbx6;Tbx6;Ypel3;Ypel3;Ypel3;Ypel3;Ypel3;Ypel3;Ypel3;Ypel3;Ypel3;Ypel3;Ypel3,11499;9313;-3601;-3601;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,4,66090,ENSMUSG00000042675,conserved gene and region,7,126777793,126777939,147,*,147,11,0.653061225,0.70952172,0.074829932,0.000000227,CpGisland,TRUE,U4,Pr-F
13195,cg07165689,0.00000637,0.00000969,0.65671743,0.511849835,gain,ns,-0.00000337,0.0000165,-0.20480735,0.837857051,neg,ns,0.00187305,0.00482447,0.388239486,0.698105293,pos,ns,0.156079069,0.0000476,0.000165913,0.286677188,0.774551011,pos,ns,0.30896574,Foxb1,Foxb1_Intergenic_downstream,9,69716549,69716598,69716597,69716598,50,+,TGGCAGCATGAATCAAATGTTGACATTCTAATTTCATGCACACATGGGCG,Distal Intergenic,9,69757710,69760940,3231,2,Foxb1-201,44342,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,21,64290,ENSMUSG00000059246,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
8434,cg12309991,0.0000204,0.00000242,8.42814458,1.34E-15,gain,yes,-0.00000084,0.00000411,-0.204645364,0.837983506,neg,ns,-0.0000917,0.001203102,-0.076188106,0.939318591,neg,ns,0.027187082,0.000147792,0.0000414,3.572048792,0.000410485,pos,ns,0.046665624,Zeb2,Zeb2_fiveUTR,2,45113194,45113243,45113194,45113195,50,+,CGCCAAGTTTCTCTCTGGGAAAGGATCTGGGATAGATTATACCTTGAAGT,Promoter (<=1kb),2,45104038,45113216,9179,2,Zeb2-205,0,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219;Zeb2-211;Zeb2-210;Zeb2-205;Zeb2-223;Zeb2-217;Zeb2-225;Zeb2-204;Zeb2-206;Zeb2-230,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;-3118;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,15,158,24136,ENSMUSG00000026872,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
25199,cg03610236,-0.00000441,0.00000312,-1.415694702,0.157868787,loss,ns,0.00000108,0.0000053,0.204556469,0.838052904,pos,ns,-0.002158656,0.001552094,-1.390802079,0.165282961,neg,ns,0.781771916,0.0000453,0.0000534,0.848133358,0.397018089,pos,ns,0.922924926,Arid1a,Arid1a_Exon,4,133685485,133685534,133685533,133685534,50,-,CGGCCAAACTGGAATGGAAATTGGTTCTGGGGGCCGCCTGCTGGTCGGCG,"Exon (Arid1a-202/Arid1a, exon 18 of 20)",4,133679008,133753611,74604,2,Arid1a-202,68077,Arid1a-202;Arid1a-205;Arid1a-201;Arid1a-203,Arid1a;Arid1a;Arid1a;Arid1a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,13,31,93760,ENSMUSG00000007880,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5403,cg24948559,-0.00000197,0.00000184,-1.072299384,0.284419631,loss,ns,0.000000639,0.00000312,0.204525018,0.838077458,pos,ns,0.00085876,0.000914975,0.938560359,0.348687191,pos,ns,0.457564006,-0.0000439,0.0000315,-1.395285124,0.163928607,neg,ns,0.944198273,Zfp451,Zfp451_Exon,1,33803174,33803223,33803222,33803223,50,-,GAATGATGAAATCTAAAACAGCTCCTGGACTGCAGATCACGTATCACTCG,"Exon (Zfp451-202/Zfp451, exon 4 of 4)",1,33761545,33814385,52841,2,Zfp451-206,11162,Zfp451-206;Zfp451-201;Zfp451-203;Zfp451-209;Zfp451-205;Zfp451-207;Zfp451-202,Zfp451;Zfp451;Zfp451;Zfp451;Zfp451;Zfp451;Zfp451,0;0;0;0;0;-2407;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,98403,ENSMUSG00000042197,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1949,cg01334355,-0.0000143,0.0000046,-3.100197146,0.002111464,loss,ns,-0.0000016,0.00000782,-0.204520494,0.838080989,neg,ns,-0.001246343,0.002291718,-0.543846537,0.586937986,neg,ns,0.231407783,-0.0000477,0.0000788,-0.605313335,0.54541369,neg,ns,0.924958172,Hgf,Hgf_Exon,5,16572598,16572647,16572598,16572599,50,-,CGCTACGAAGTCTGTGACATTCCTCAGTGTTCAGAAGGTAAATAAACCTG,"Exon (Hgf-202/Hgf, exon 6 of 6)",5,16553495,16573434,19940,1,Hgf-202,19103,Hgf-202;Hgf-204;Hgf-206;Hgf-205;Hgf-201;Hgf-203,Hgf;Hgf;Hgf;Hgf;Hgf;Hgf,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,8,15234,ENSMUSG00000028864,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27755,cg25242181,0.00000185,0.0000036,0.512723227,0.608510081,gain,ns,-0.00000125,0.00000612,-0.204375534,0.83819416,neg,ns,-0.000907939,0.001792454,-0.506534218,0.612841741,neg,ns,0.212651662,-0.000026,0.0000616,-0.422227662,0.673151535,neg,ns,0.954457149,Myt1,Myt1_Exon,2,181805056,181805105,181805056,181805057,50,+,CGCAAGTTTCGATGCTCAGGTTTTTGGCAAACGCATGCTTGCCCCAAAGA,"Exon (Myt1-201/Myt1, exon 11 of 23)",2,181763332,181827797,64466,1,Myt1-201,41724,Myt1-201;Myt1-202;Myt1-211;Myt1-203;Myt1-205;Myt1-206;Myt1-204;Myt1-208,Myt1;Myt1;Myt1;Myt1;Myt1;Myt1;Myt1;Myt1,0;0;37753;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,2,17932,ENSMUSG00000010505,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16058,cg22058025,-0.00000629,0.00000451,-1.39374112,0.164394108,loss,ns,-0.00000157,0.00000767,-0.204369438,0.838198919,neg,ns,-0.00485971,0.002246858,-2.162890924,0.031313787,neg,ns,1.5042644,0.0000802,0.0000773,1.037938774,0.300107466,pos,ns,0.793724816,Zfp407,Zfp407_Intron,18,84329418,84329467,84329418,84329419,50,+,CGACTCCTGCGAGCCCTTGTTCTGTGTGATAAGGCAATCTCCTCCGGGAT,"Intron (Zfp407-201/Zfp407, intron 2 of 2)",18,84128027,84558425,430399,2,Zfp407-201,228958,Zfp407-201;Zfp407-202;Zfp407-203,Zfp407;Zfp407;Zfp407,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,32,240476,ENSMUSG00000048410,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25783,cg16606195,0.000102607,0.0000106,9.647220567,1.98E-19,gain,yes,-0.00000369,0.0000181,-0.204296759,0.83825566,neg,ns,0.023194362,0.005293581,4.381601538,0.0000161,pos,ns,4.792018518,-0.000700056,0.000182046,-3.845491617,0.000146029,neg,ns,0.157812815,Uncx,Uncx_Promoter,5,139541425,139541474,139541425,139541426,50,+,CGAAATTTCAACTCAAATTAACATTCTGTCAGCTCCAGAAAATGGGATAA,Promoter (2-3kb),5,139543494,139548179,4686,1,Uncx-201,-2020,Uncx-201;Uncx-202,Uncx;Uncx,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,22,88,22255,ENSMUSG00000029546,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
22906,cg09166340,-0.00000118,0.00000236,-0.499734617,0.617616465,loss,ns,0.000000818,0.00000401,0.204110375,0.838401178,pos,ns,-0.001775533,0.001173761,-1.51268731,0.131377878,neg,ns,0.881477757,0.000085,0.0000404,2.106498045,0.03596457,pos,ns,0.933242544,Lrrc41,Lrrc41_Exon,4,116088690,116088739,116088690,116088691,50,-,CGCCACCTGCTGTTCTCTGATGTGGCTGCTCAGCAGTCACTTCGGCAGCT,"Exon (Lrrc41-201/Lrrc41, exon 4 of 10)",4,116075269,116097043,21775,1,Lrrc41-201,13421,Lrrc41-201;Lrrc41-202;Lrrc41-204;Lrrc41-203,Lrrc41;Lrrc41;Lrrc41;Lrrc41,0;0;11805;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,Exon,9,9,230654,ENSMUSG00000028703,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18811,cg27235635,-0.00000336,0.0000184,-0.182174219,0.855565074,loss,ns,0.00000639,0.0000313,0.204038031,0.838457662,pos,ns,-0.005992221,0.009179881,-0.652755907,0.514397423,neg,ns,0.288701215,-0.000401257,0.000315695,-1.271026234,0.204672228,neg,ns,0.732207539,Gk2,Gk2_Intron,5,97564021,97564070,97564021,97564022,50,-,CGTCCATCTGTGTGTAATCATCGATTCCATTAAGCCTTATGGCCTTGTCA,"Intron (4930467D21Rik-202/4930467D21Rik-202, intron 4 of 4)",5,97455142,97457021,1880,2,Gk2-201,-107049,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,13,14626,ENSMUSG00000050553,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23220,cg22428014,0.0000156,0.00000562,2.778453939,0.005794939,gain,ns,-0.00000195,0.00000955,-0.204025185,0.838467691,neg,ns,-0.001072038,0.00279654,-0.383344625,0.701727007,neg,ns,0.153831809,0.00000971,0.0000962,0.100979343,0.919632136,pos,ns,0.896848027,Xylt1,Xylt1_Intron,7,117501874,117501923,117501922,117501923,50,+,ACCGCATTGTTCTTTAATTAGCTGTTGTAATTGTTTTAGTCTAATCTCCG,"Intron (Xylt1-202/Xylt1, intron 2 of 6)",7,117380979,117635185,254207,1,Xylt1-202,120895,Xylt1-202;Xylt1-201;Xylt1-203,Xylt1;Xylt1;Xylt1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,6,233781,ENSMUSG00000030657,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12272,cg08456212,0.0000253,0.00000371,6.817898808,4.83E-11,gain,yes,-0.00000129,0.00000631,-0.203977128,0.838505213,neg,ns,0.004581218,0.001847645,2.479490663,0.013688251,pos,ns,1.86365203,-0.0000408,0.0000635,-0.641660828,0.521567583,neg,ns,0.073574005,Otud7a,Otud7a_threeUTR,7,63758824,63758873,63758824,63758825,50,+,CGTGTTTGGTCAAACGTTCCTAATGGTGCCTGAACCTACACTGACGCCAC,3' UTR,7,63444751,63759028,314278,1,Otud7a-201,314073,Otud7a-201;Otud7a-204;Otud7a-203,Otud7a;Otud7a;Otud7a,0;108009;4112,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,4,170711,ENSMUSG00000033510,conserved gene and region,7,63758789,63758839,51,*,51,7,0.647058824,1.322222222,0.137254902,0.00000149,CpGisland,TRUE,NA,NRS
6900,cg17303577,-0.0000138,0.00000685,-2.007195495,0.045596625,loss,ns,-0.00000237,0.0000116,-0.203879314,0.838581585,neg,ns,0.006081145,0.003409808,1.78342721,0.075495024,pos,ns,1.122081672,-0.000294461,0.000117263,-2.511119654,0.012543343,neg,ns,0.843131668,Rims2,Rims2_fiveUTR,15,39391914,39391963,39391914,39391915,50,-,CGGGTACTGAATCTTCTACGACTGAATTAGAAGAATAATGACTGTACAAT,5' UTR,15,39198332,39681940,483609,1,Rims2-202,193582,Rims2-202;Rims2-205;Rims2-201;Rims2-211,Rims2;Rims2;Rims2;Rims2,0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,19,116838,ENSMUSG00000037386,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10772,cg00471170,-0.00000011,0.000000979,-0.111976239,0.910914716,loss,ns,0.000000339,0.00000166,0.203809735,0.838635912,pos,ns,0.001635514,0.000487102,3.357645209,0.000884088,pos,ns,3.053504612,-0.0000159,0.0000168,-0.950587725,0.342554217,neg,ns,0.969954825,Vti1a,Vti1a_Intron,19,55376892,55376941,55376940,55376941,50,-,ATTAAATTCCCAGGTGAGGCAATTTAAGCAATTGCTTTGCCATGTGCACG,"Intron (Vti1a-206/Vti1a, intron 3 of 7)",19,55316295,55577001,260707,1,Vti1a-206,60597,Vti1a-206;Vti1a-205;Vti1a-202;Vti1a-201;Vti1a-203,Vti1a;Vti1a;Vti1a;Vti1a;Vti1a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,32,53611,ENSMUSG00000024983,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13614,cg11473209,0.00000238,0.0000078,0.30464446,0.76084137,gain,ns,-0.0000027,0.0000132,-0.203761228,0.838673786,neg,ns,-0.01138375,0.003881552,-2.932782903,0.003609697,neg,ns,2.442529305,0.000327253,0.000133486,2.451585823,0.014774391,pos,ns,0.141744229,Dlx1,Dlx1_Intron,2,71530661,71530710,71530661,71530662,50,+,CGCTATAAACAATGTATGCAATTAAGGGTAATTAAACCTCAACTACCGCC,"Intron (Dlx1-201/Dlx1, intron 1 of 2)",2,71528113,71533980,5868,1,Dlx1-201,2548,Dlx1-201;Dlx1-202;Dlx1-205;Dlx1-204;Dlx1-203;Dlx1-206,Dlx1;Dlx1;Dlx1;Dlx1;Dlx1;Dlx1,0;0;0;0;0;-70,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,36,13390,ENSMUSG00000041911,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
10646,cg16121540,0.0000125,0.00000271,4.60823934,0.00000594,gain,ns,-0.000000937,0.0000046,-0.203702914,0.838719318,neg,ns,0.002683484,0.001347717,1.991132304,0.047343805,pos,ns,1.324736841,0.0000858,0.0000463,1.8515454,0.065041936,pos,ns,0.042011709,Tspan17,Tspan17_Exon,13,54789639,54789688,54789687,54789688,50,+,CTGCGGGAAATACTTCCTGTTTGGCTTCAACATTGTCTTCTGGGTGAGCG,Promoter (<=1kb),13,54789645,54795148,5504,1,Tspan17-209,0,Eif4e1b-209;Eif4e1b-207;Eif4e1b-205;Eif4e1b-204;Eif4e1b-203;Eif4e1b-202;Eif4e1b-208;Eif4e1b-206;Eif4e1b-201;Eif4e1b-210;Tspan17-201;Tspan17-204;Tspan17-207;Tspan17-208;Tspan17-202;Tspan17-209;Tspan17-203;Tspan17-206,Eif4e1b;Eif4e1b;Eif4e1b;Eif4e1b;Eif4e1b;Eif4e1b;Eif4e1b;Eif4e1b;Eif4e1b;Eif4e1b;Tspan17;Tspan17;Tspan17;Tspan17;Tspan17;Tspan17;Tspan17;Tspan17,5641;5638;5638;5638;5638;5636;5636;5636;5626;5619;0;0;0;0;0;0;-3052;-3183,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,74257,ENSMUSG00000025875,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23657,cg07374022,-0.0000196,0.00000652,-3.009152102,0.002834704,loss,ns,-0.00000226,0.0000111,-0.20369923,0.838722196,neg,ns,-0.003876954,0.003243909,-1.195148906,0.232942362,neg,ns,0.632751525,0.0000101,0.000111558,0.090854567,0.927666827,pos,ns,0.865662171,Scn5a,Scn5a_Exon,9,119543323,119543372,119543371,119543372,50,+,CCTGGGATAACTGAAATAGTTTTTAGAGCTCTCAGGACTCTGAAAGTTCG,"Exon (Scn5a-202/Scn5a, exon 6 of 28)",9,119483408,119562678,79271,2,Scn5a-201,19306,Scn5a-201;Scn5a-202;Scn5a-203,Scn5a;Scn5a;Scn5a,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,6,20271,ENSMUSG00000032511,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17217,cg06518080,-0.000000796,0.00000141,-0.562932355,0.573887842,loss,ns,0.000000489,0.0000024,0.203592044,0.838805889,pos,ns,0.000862413,0.000704199,1.224672107,0.221628585,pos,ns,0.654374226,-0.0000266,0.0000242,-1.097426394,0.273306735,neg,ns,0.966430624,Trim46,Trim46_Exon,3,89242382,89242431,89242430,89242431,50,-,GCCTGGTAGGCACTGAGCACTGGTGTGATCTTGTGCCCGCTGTGGGTGCG,"Exon (Trim46-203/Trim46, exon 4 of 10)",3,89234177,89245013,10837,2,Trim46-203,2582,Krtcap2-202;Krtcap2-201;Krtcap2-204;Trim46-203;Trim46-202;Trim46-201;Trim46-205;Trim46-206;Trim46-204,Krtcap2;Krtcap2;Krtcap2;Trim46;Trim46;Trim46;Trim46;Trim46;Trim46,-3535;-3535;-4003;0;0;0;0;0;3878,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,360213,ENSMUSG00000042766,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
9023,cg08354308,-0.000000255,0.000000192,-1.331135613,0.184122513,loss,ns,6.62E-08,0.000000325,0.203505062,0.838873809,pos,ns,0.000125983,0.0000954,1.321210912,0.187405392,pos,ns,0.727217919,-0.00000248,0.00000328,-0.755582309,0.450473383,neg,ns,0.005179293,Srf,Srf_Exon,17,46555326,46555375,46555374,46555375,50,-,ACCTTCTTCATGATGCCCGTCTTCCTCTTGCTGAAGGTCGTGTAGCGCCG,Promoter (<=1kb),17,46548329,46556175,7847,2,Srf-201,800,Srf-201;Srf-202;Srf-204,Srf;Srf;Srf,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,11,20807,ENSMUSG00000015605,conserved gene and region,17,46555216,46556165,950,*,950,125,0.753684211,0.946516818,0.131578947,2.27E-111,CpGisland,TRUE,NA,NRS
8486,cg25001128,0.0000446,0.00000475,9.37746052,1.48E-18,gain,yes,-0.00000164,0.00000807,-0.20343766,0.83892644,neg,ns,0.007928504,0.002365081,3.352318184,0.000900664,pos,ns,3.045437398,-0.000125224,0.0000813,-1.539611235,0.124675232,neg,ns,0.093070143,Lbx1,Lbx1_Intergenic_downstream,19,45226158,45226207,45226206,45226207,50,+,TTTCATCTCAAATCATACACTTTACTGACACGCCATCTAGCAAACAGTCG,Distal Intergenic,19,45232684,45235812,3129,2,Lbx1-201,9605,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,30,50,16814,ENSMUSG00000025216,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
14990,cg11102471,-0.0000122,0.00000373,-3.258229332,0.00124553,loss,ns,0.00000129,0.00000634,0.203326976,0.83901287,pos,ns,-0.000814402,0.001858187,-0.438277538,0.661490358,neg,ns,0.179476482,-0.0000678,0.0000639,-1.060341645,0.289814625,neg,ns,0.917205795,Slc14a2,Slc14a2_Intron,18,78378153,78378202,78378201,78378202,50,+,GCCACGACCAATTATTATTCAGAAAAATCCTGCTGTTTAGCCAAAGAGCG,"Intron (Slc14a2-206/Slc14a2, intron 2 of 21)",18,78146148,78596942,450795,2,Slc14a2-206,218740,Slc14a2-206;Slc14a2-203,Slc14a2;Slc14a2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,12,27411,ENSMUSG00000024552,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16171,cg09445259,-0.000221268,0.0000233,-9.480408245,6.88E-19,loss,yes,0.00000806,0.0000397,0.203316202,0.839021283,pos,ns,0.029646449,0.011616299,2.552142348,0.011185683,pos,ns,1.951337509,-0.001330826,0.000399484,-3.331367281,0.000968703,neg,ns,0.716810985,Bnc2,Bnc2_Intron,4,84551505,84551554,84551505,84551506,50,+,CGCTGGTATTCATCTAATGGCTTGTCAAGACAAAACTGTCCCTGTTCTTG,"Intron (Bnc2-201/Bnc2, intron 2 of 7)",4,84275095,84675034,399940,2,Bnc2-201,123480,Bnc2-201;Bnc2-202;Bnc2-214;Bnc2-215;Bnc2-206;Bnc2-211;Bnc2-217;Bnc2-207;Bnc2-203;Bnc2-209;Bnc2-221;Bnc2-204;Bnc2-210,Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,91,242509,ENSMUSG00000028487,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16037,cg18752282,0.0000253,0.0000115,2.201815677,0.02841464,gain,ns,-0.00000396,0.0000195,-0.203255043,0.839069041,neg,ns,0.002080992,0.005711088,0.364377481,0.715824568,pos,ns,0.1451934,-0.000211003,0.000196404,-1.074331496,0.283509632,neg,ns,0.621555735,Bnc2,Bnc2_threeUTR,4,84277898,84277947,84277946,84277947,50,+,GAGCTTACCTTGTGACAATAAGATCAGCTTTCTAATCTTTTGCTAAATCG,3' UTR,4,84275095,84675034,399940,2,Bnc2-201,397087,Bnc2-201;Bnc2-202;Bnc2-214;Bnc2-218;Bnc2-215;Bnc2-222;Bnc2-216;Bnc2-213;Bnc2-219,Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,91,242509,ENSMUSG00000028487,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27048,cg08869534,-0.0000127,0.00000232,-5.472669903,9.16E-08,loss,yes,-0.000000802,0.00000395,-0.203231802,0.83908719,neg,ns,-0.003399927,0.001156671,-2.939406161,0.003535512,neg,ns,2.451547737,0.0000844,0.0000398,2.121117902,0.034705323,pos,ns,0.967297024,Rasal2,Rasal2_Exon,1,157176054,157176103,157176102,157176103,50,-,AAATGTTCGCCCCAGAAAATATTGTCTGCTTTGGTCTTGCTGGTTGTACG,"Exon (Rasal2-201/Rasal2, exon 8 of 18)",1,157135182,157412595,277414,2,Rasal2-201,236492,Rasal2-201;Rasal2-204;Rasal2-203;Rasal2-205;Rasal2-202;Rasal2-207,Rasal2;Rasal2;Rasal2;Rasal2;Rasal2;Rasal2,0;0;0;0;5338;55088,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,10,226525,ENSMUSG00000070565,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
981,cg14272342,-0.0000171,0.0000119,-1.432382865,0.153041848,loss,ns,-0.00000411,0.0000202,-0.203177161,0.839129859,neg,ns,0.018043448,0.005926529,3.044522074,0.002530293,pos,ns,2.596829244,-0.000234412,0.000203813,-1.150132931,0.250975588,neg,ns,0.917748505,Qk,Qk_Exon,17,10216311,10216360,10216359,10216360,50,+,AGCGGTCTGTATTTGTCTGATCAAAGGCATTATGGTAGGGCCAGCTGGCG,"Exon (Qk-204/Qk, exon 6 of 8)",17,10202601,10319380,116780,2,Qk-204,103020,Qk-204;Qk-202;Qk-203;Qk-201;Qk-206;Qk-205,Qk;Qk;Qk;Qk;Qk;Qk,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,17,19317,ENSMUSG00000062078,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26439,cg08308796,0.0000781,0.0000111,7.024623814,1.37E-11,gain,yes,0.00000383,0.0000189,0.203025947,0.839247945,pos,ns,0.020706837,0.00553088,3.743859129,0.000215963,pos,ns,3.665620286,-0.000614261,0.000190207,-3.229442834,0.001373369,neg,ns,0.140525374,Foxa2,Foxa2_Intron,2,148023550,148023599,148023550,148023551,50,+,CGGAGAACTAGCATTTTTATTTCGGCTCCAAGCTGTCAAAGATCTGGAGA,"Intron (9030622O22Rik-203/9030622O22Rik-203, intron 1 of 2)",2,148044240,148045464,1225,2,Foxa2-203,21865,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,25,15376,ENSMUSG00000037025,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10863,cg10120553,0.00000263,0.00000357,0.735394335,0.462655372,gain,ns,-0.00000123,0.00000607,-0.203008997,0.839261182,neg,ns,-0.002074086,0.00177863,-1.166114196,0.244464634,neg,ns,0.61178396,0.0000147,0.0000612,0.240243922,0.810299956,pos,ns,0.842754581,Neurod6,Neurod6_Exon,6,55678689,55678738,55678689,55678690,50,+,CGCAGATGTAAGTCGTAAGGGAAGTGGCTGTCGGTGGGCAACCTGAACAT,"Exon (Neurod6-201/Neurod6, exon 2 of 2)",6,55677822,55681263,3442,2,Neurod6-201,2525,Neurod6-201,Neurod6,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,16,11922,ENSMUSG00000037984,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20771,cg05801062,-0.00000109,0.0000131,-0.083007726,0.933898969,loss,ns,0.00000453,0.0000223,0.20294883,0.839308168,pos,ns,0.021249631,0.006535992,3.251171608,0.001275809,pos,ns,2.894214305,-0.000779026,0.000224772,-3.465847031,0.000603134,neg,ns,0.733435787,Rbm26,Rbm26_Exon,14,105113492,105113541,105113492,105113493,50,+,CGTGAGCCTCTGCCAATTTGGCACCTTTCACGACTACTAAAAAGAAAAGA,"Exon (Gm17066-202/Gm17066-202, exon 2 of 4)",14,105106751,105130337,23587,2,Rbm26-205,16796,Rbm26-205;Rbm26-204;Rbm26-202;Rbm26-201;Rbm26-203,Rbm26;Rbm26;Rbm26;Rbm26;Rbm26,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,3,74213,ENSMUSG00000022119,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22084,cg27214343,0.00000454,0.0000028,1.624237146,0.105341507,gain,ns,-0.000000964,0.00000475,-0.202895207,0.839350045,neg,ns,0.004208139,0.00139199,3.023110109,0.00271077,pos,ns,2.566907402,-0.000136272,0.0000479,-2.84669412,0.004712236,neg,ns,0.052807538,Myl3,Myl3_Intergenic_downstream,9,110781888,110781937,110781888,110781889,50,+,CGGGGGCCTGACCACCGCCTGTTTTTAATAAGGAGCTGGTATTTCCCCGA,Distal Intergenic,9,110768435,110769794,1360,1,Myl3-204,13453,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,17897,ENSMUSG00000059741,conserved gene but different region,9,110781363,110782089,727,*,727,60,0.679504814,0.716962525,0.082530949,1.75E-40,CpGisland,TRUE,U1,Pr-A
14269,cg15167046,-0.0000723,0.00000982,-7.365948934,1.60E-12,loss,yes,0.00000338,0.0000167,0.202838751,0.839394134,pos,ns,-0.013121576,0.004887855,-2.684526567,0.00765384,neg,ns,2.116120616,0.000292236,0.000168093,1.738540812,0.083108401,pos,ns,0.87177868,Smg6,Smg6_Intron,11,75013404,75013453,75013452,75013453,50,+,TCTCTGCGTCTTGGCTGACTTTTTTACCTCTCGAAGAATTTGGAAGGCCG,"Intron (Smg6-201/Smg6, intron 10 of 18)",11,74925823,75164448,238626,1,Smg6-201,87581,Smg6-201;Smg6-202;Smg6-204,Smg6;Smg6;Smg6,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,34,103677,ENSMUSG00000038290,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9115,cg12969847,-0.0000171,0.0000032,-5.350835442,0.000000171,loss,yes,0.0000011,0.00000544,0.202759043,0.839456383,pos,ns,-0.001855453,0.001593269,-1.164557416,0.245093596,neg,ns,0.610668035,0.000055,0.0000548,1.003126167,0.316582345,pos,ns,0.934746428,Nt5c2,Nt5c2_fiveUTR,19,46924273,46924322,46924321,46924322,50,+,TAATCCATATCAAAACCAAAACACTTTATCTTTTCCATTGCTAAACTTCG,5' UTR,19,46883317,46969568,86252,2,Nt5c2-205,45246,Nt5c2-205;Nt5c2-202;Nt5c2-201;Nt5c2-210;Nt5c2-209;Nt5c2-207;Nt5c2-203;Nt5c2-208;Nt5c2-211;Nt5c2-213;Nt5c2-212;Nt5c2-206;Nt5c2-215,Nt5c2;Nt5c2;Nt5c2;Nt5c2;Nt5c2;Nt5c2;Nt5c2;Nt5c2;Nt5c2;Nt5c2;Nt5c2;Nt5c2;Nt5c2,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,2,76952,ENSMUSG00000025041,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1829,cg03279079,-0.0000217,0.00000608,-3.574473743,0.00040685,loss,ns,-0.00000209,0.0000103,-0.202670298,0.839525691,neg,ns,-0.004380546,0.003025586,-1.447833785,0.148674112,neg,ns,0.827764647,0.0000275,0.00010405,0.264519802,0.791555188,pos,ns,0.928907659,Foxp2,Foxp2_Intron,6,15435431,15435480,15435479,15435480,50,+,ATAAAGAATGACAATACACCTTATTTCATTACAATACCCTGCTAATGACG,"Intron (Foxp2-207/Foxp2, intron 18 of 18)",6,14901349,15441977,540629,1,Foxp2-207,534082,Foxp2-207;Foxp2-205;Foxp2-204;Foxp2-201;Foxp2-206,Foxp2;Foxp2;Foxp2;Foxp2;Foxp2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,38,65,114142,ENSMUSG00000029563,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22015,cg18200760,0.0000107,0.0000025,4.273747992,0.0000256,gain,ns,0.000000859,0.00000424,0.202316783,0.83980179,pos,ns,0.001806575,0.001243345,1.452995544,0.147236475,pos,ns,0.831984589,-0.0000486,0.0000428,-1.135598457,0.25700185,neg,ns,0.039149634,Ntng1,Ntng1_fiveUTR,3,110142987,110143036,110142987,110142988,50,-,CGTCCTCTTCCGAAATGCAAAAGATCAGTGACTTTGACAGGTAGATGAGG,Promoter (<=1kb),3,109780040,110143004,362965,2,Ntng1-211,0,Ntng1-211;Ntng1-208;Ntng1-206;Ntng1-201,Ntng1;Ntng1;Ntng1;Ntng1,0;0;0;975,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,7,80883,ENSMUSG00000059857,conserved gene and region,3,110142575,110142988,414,*,414,46,0.748792271,0.792707293,0.111111111,1.73E-37,CpGisland,TRUE,U3,Pr-B
5489,cg07224818,-0.00000597,0.0000081,-0.737482266,0.461386957,loss,ns,0.00000278,0.0000138,0.202241901,0.839860276,pos,ns,0.004794422,0.004029349,1.189875038,0.235005982,pos,ns,0.628921082,-0.000228253,0.000138569,-1.647219262,0.100526222,neg,ns,0.640060016,Pbx3,Pbx3_Intron,2,34106602,34106651,34106602,34106603,50,+,CGGCTCTGCGCTCAATTTAATTGCACTCTAGTGAAAGTGCTCCTCTTGTA,"Intron (C230014O12Rik-201/C230014O12Rik-201, intron 1 of 3)",2,34172873,34288852,115980,2,Pbx3-210,182201,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,82,18516,ENSMUSG00000038718,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2546,cg23912792,-0.0000145,0.0000133,-1.090165427,0.276486943,loss,ns,0.00000458,0.0000226,0.202184358,0.839905221,pos,ns,0.00020475,0.006630313,0.030880837,0.975384444,pos,ns,0.010824175,-0.000485068,0.000228016,-2.12734302,0.034180734,neg,ns,0.726470663,Jade3,Jade3_threeUTR,X,20494210,20494259,20494210,20494211,50,-,CGCCATTGCCATGAAAATATGAACCATGCTATTGAGACAGAGGAAGGGCT,3' UTR,20,20425688,20519939,94252,1,Jade3-202,68522,Jade3-202;Jade3-204;Jade3-203;Jade3-201,Jade3;Jade3;Jade3;Jade3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,2,382207,ENSMUSG00000037315,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15340,cg14102777,-0.00000606,0.00000181,-3.34932044,0.000910118,loss,ns,0.000000621,0.00000308,0.202046501,0.840012897,pos,ns,-0.00000984,0.000901007,-0.010923193,0.991291753,neg,ns,0.003798507,-0.0000303,0.000031,-0.976570012,0.329543521,neg,ns,0.034435261,Mbd3,Mbd3_Exon,10,80399109,80399158,80399109,80399110,50,+,CGCGCTCATTCACCTATAGTAAAAGACATCCCTGTGGCCGGCCGACAGCC,Promoter (<=1kb),10,80392539,80399550,7012,2,Mbd3-201,392,Mbd3-206;Mbd3-201;Mbd3-204;Mbd3-203;Mbd3-202;Mbd3-205;Uqcr11-202;Uqcr11-201;Uqcr11-203,Mbd3;Mbd3;Mbd3;Mbd3;Mbd3;Mbd3;Uqcr11;Uqcr11;Uqcr11,-3939;0;0;0;-3390;-3783;7608;7672;7637,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,17192,ENSMUSG00000035478,conserved gene but different region,10,80398667,80399604,938,*,938,123,0.73347548,1.001510417,0.131130064,2.20E-109,CpGisland,TRUE,U1,Pr-A
15778,cg09567280,-0.00000407,0.00000202,-2.015969513,0.044665553,loss,ns,0.000000693,0.00000343,0.20202186,0.840032144,pos,ns,-0.00052068,0.001004968,-0.518106421,0.604753589,neg,ns,0.218421546,-0.0000275,0.0000346,-0.795715271,0.426806415,neg,ns,0.962206595,Tet3,Tet3_Exon,6,83368312,83368361,83368360,83368361,50,+,CAGCCCGTGGTTGGGCTGGTTGAGGTTCTTGTGCTGGTAGAAGACCAGCG,"Exon (Tet3-202/Tet3, exon 11 of 11)",6,83362373,83441675,79303,2,Tet3-202,73314,Tet3-202;Tet3-203,Tet3;Tet3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,8,194388,ENSMUSG00000034832,conserved gene and region,6,83368360,83368528,169,*,169,11,0.621301775,0.692622951,0.065088757,0.000000917,CpGisland,TRUE,U10,Tr-S
8518,cg16770694,-0.000072,0.0000124,-5.824750448,1.43E-08,loss,yes,0.00000424,0.000021,0.201965887,0.840075864,pos,ns,-0.013438864,0.006152621,-2.184250427,0.029692825,neg,ns,1.527348487,0.000269875,0.000211588,1.27547433,0.20309637,pos,ns,0.876849022,Gm13475,Gm13475_Intergenic_upstream,2,45279781,45279830,45279829,45279830,50,+,CAGTTAACAGATATCAGTAAAATACCCATGTTACATAATTAAGGATAACG,Distal Intergenic,2,45329232,45329465,234,1,Gm13475-201,-49402,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,12,21,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
3871,cg23016142,-0.0000457,0.0000126,-3.6391613,0.000320334,loss,ns,0.00000431,0.0000213,0.201965253,0.840076359,pos,ns,0.013702296,0.006250771,2.192096842,0.029115844,pos,ns,1.535870616,-0.00076367,0.000214964,-3.552555659,0.000440834,neg,ns,0.683313868,5730522E02Rik,5730522E02Rik_Intron,11,25674907,25674956,25674955,25674956,50,-,ACAGATGTCAAGAGGTTCAGATTAAGCTTGTTAAAGATCTGCTTCACTCG,"Intron (5730522E02Rik-202/5730522E02Rik, intron 2 of 5)",11,25617668,26210569,592902,2,5730522E02Rik-202,535613,5730522E02Rik-202;5730522E02Rik-201;5730522E02Rik-208,5730522E02Rik;5730522E02Rik;5730522E02Rik,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,90,70626,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7787,cg00823568,0.0000302,0.000012,2.522748476,0.012144324,gain,ns,0.00000411,0.0000203,0.201888126,0.840136603,pos,ns,0.001927734,0.005958773,0.323511907,0.746525723,pos,ns,0.126955223,-0.000257789,0.000204922,-1.257987052,0.209343163,neg,ns,0.848132408,Arhgap15,Arhgap15_Intron,2,44310312,44310361,44310360,44310361,50,-,AATGAAGTGTCTGCAGTGCACAGAGCTTCTGGATGGCATCTTAACGCACG,"Intron (Arhgap15-203/Arhgap15, intron 12 of 14)",2,43748824,44395953,647130,1,Arhgap15-203,561488,Arhgap15-203;Arhgap15-202;Arhgap15-201,Arhgap15;Arhgap15;Arhgap15,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,72,78,76117,ENSMUSG00000049744,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1175,cg26002895,-0.0000132,0.00000683,-1.934770647,0.053928008,loss,ns,-0.00000234,0.0000116,-0.201857329,0.840160659,neg,ns,0.000467672,0.003398821,0.137598162,0.890647336,pos,ns,0.050294227,-0.000196586,0.000116885,-1.681869937,0.09360108,neg,ns,0.938426386,Prkn,Prkn_Intron,17,11990614,11990663,11990662,11990663,50,-,AAATTGGGCTCAAATTGCCATATGGCTTGGATTTCACATTTTTACTGGCG,"Intron (Prkn-209/Prkn, intron 9 of 11)",17,10840384,12063361,1222978,1,Prkn-209,1150230,Prkn-209;Prkn-211;Prkn-212;Prkn-213;Prkn-214;Prkn-215,Prkn;Prkn;Prkn;Prkn;Prkn;Prkn,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,4,50873,ENSMUSG00000023826,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18075,cg20375151,0.0000323,0.00000811,3.987474712,0.0000834,gain,ns,0.00000278,0.0000138,0.201689917,0.840291429,pos,ns,0.008020131,0.004034539,1.98786808,0.047705684,pos,ns,1.321429875,-0.000248309,0.000138747,-1.789649097,0.074486329,neg,ns,0.841643933,Prickle1,Prickle1_threeUTR,15,93499852,93499901,93499900,93499901,50,+,ATCAGCTTTAAAATCTGAACTGTACAGTATATACATTAATATTTGCACCG,3' UTR,15,93499114,93519523,20410,2,Prickle1-202,19622,Prickle1-202;Prickle1-201,Prickle1;Prickle1,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,106042,ENSMUSG00000036158,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13056,cg12705120,-0.000000754,0.000000437,-1.72420966,0.085666881,loss,ns,-0.00000015,0.000000743,-0.20167638,0.840302003,neg,ns,-0.000201797,0.000217566,-0.927522149,0.354377073,neg,ns,0.450534384,-0.00000182,0.00000748,-0.243781262,0.807561484,neg,ns,0.989311308,Chd3,Chd3_Exon,11,69346691,69346740,69346739,69346740,50,+,CAGGCACTCGGCCTCGGCGAAGCGGGCGTGGAGGGCCATGGCGGGGTGCG,"Exon (Chd3-203/Chd3, exon 4 of 7)",11,69343273,69348610,5338,2,Chd3-203,1870,Chd3-205;Chd3-203;Chd3-202;Chd3-211;Chd3-201;Chd3-204;Chd3-208;Rnf227-201;Rnf227-203,Chd3;Chd3;Chd3;Chd3;Chd3;Chd3;Chd3;Rnf227;Rnf227,0;0;0;0;0;0;0;6230;5920,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,22,26,216848,ENSMUSG00000018474,conserved gene but different region,11,69346504,69346858,355,*,355,27,0.676056338,0.691010021,0.076056338,1.34E-17,CpGisland,TRUE,U10,Tr-S
5357,cg15471499,0.00000697,0.00000209,3.335704192,0.000954238,gain,ns,0.000000716,0.00000355,0.201667967,0.840308575,pos,ns,0.002205148,0.001039854,2.120631927,0.034746566,pos,ns,1.459088116,-0.0000333,0.0000358,-0.931932547,0.352096607,neg,ns,0.049688394,Lmx1b,Lmx1b_Intron,2,33616619,33616668,33616619,33616620,50,+,CGCTATTGTGTGAGGAATATCAATGGAGTAATTACAGTTACATCGGGCGC,"Intron (Lmx1b-201/Lmx1b, intron 2 of 7)",2,33560965,33640608,79644,2,Lmx1b-201,23940,Lmx1b-201;Lmx1b-203;Lmx1b-204;Lmx1b-202,Lmx1b;Lmx1b;Lmx1b;Lmx1b,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,26,16917,ENSMUSG00000038765,conserved gene and region,2,33616493,33616620,128,*,128,9,0.5703125,0.864864865,0.0703125,0.00000707,CpGisland,TRUE,NA,NRS
9155,cg01593645,-0.0000236,0.00000704,-3.356910688,0.000886356,loss,ns,-0.00000241,0.000012,-0.201614369,0.840350443,neg,ns,-0.007631444,0.00350549,-2.176997888,0.030234895,neg,ns,1.519491539,-0.0000239,0.000120554,-0.197999655,0.843175109,neg,ns,0.909088083,Cadm1,Cadm1_Intron,9,47268611,47268660,47268611,47268612,50,+,CGTTCATAAATTAATCTCCTGGGATTAGATTCTGTGTTTTAGTAACACTC,"Intron (Gm31816-206/Gm31816-206, intron 1 of 3)",9,47530173,47853385,323213,1,Cadm1-204,-261513,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,77,54725,ENSMUSG00000032076,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27279,cg16143923,0.000000675,0.00000478,0.141420615,0.887629526,gain,ns,-0.00000163,0.00000811,-0.201432052,0.840492863,neg,ns,0.003340178,0.002377165,1.405110253,0.16098979,pos,ns,0.793201666,-0.0000866,0.0000818,-1.059089523,0.290383525,neg,ns,0.890628011,Gtsf1l,Gtsf1l_Intergenic_upstream,2,163111814,163111863,163111862,163111863,50,-,AATAATGTAAAAATAATGAGCTCCTATTCCCCTTTGATGTGCAGCGCACG,Distal Intergenic,2,163087034,163087855,822,2,Gtsf1l-201,-24008,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,5,68236,ENSMUSG00000070708,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27354,cg10051496,0.000014,0.00000446,3.140476343,0.001849363,gain,ns,0.00000153,0.00000759,0.20140431,0.840514534,pos,ns,0.004259403,0.002222247,1.916709998,0.056193957,pos,ns,1.250310385,0.0000166,0.0000764,0.216559999,0.828693703,pos,ns,0.116036953,Cdh22,Cdh22_Intron,2,165215401,165215450,165215449,165215450,50,-,GGGAGTGAAGTTCCAGGATCATTATTAATAGCTTTTCATTTCAGTGGCCG,"Intron (Cdh22-201/Cdh22, intron 1 of 11)",2,165111507,165234853,123347,2,Cdh22-201,19403,Cdh22-201,Cdh22,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,23,104010,ENSMUSG00000053166,conserved gene and region,2,165215254,165215521,268,*,268,22,0.593283582,0.956521739,0.082089552,3.69E-15,CpGisland,TRUE,U13,Hc-P
19330,cg25135002,0.00000421,0.00000561,0.75041251,0.45357548,gain,ns,0.00000192,0.00000953,0.201365274,0.840545029,pos,ns,0.002406866,0.002790881,0.862403673,0.389132067,pos,ns,0.409902979,-0.0000304,0.000096,-0.316766894,0.751633696,neg,ns,0.929439345,Foxp1,Foxp1_Intron,6,99017340,99017389,99017388,99017389,50,-,ATGAACTTGATAGCATTTCATATTTGCAACTGTTAACACGTTTCTGCACG,"Intron (Foxp1-206/Foxp1, intron 4 of 17)",6,98925338,99266515,341178,2,Foxp1-206,249126,Foxp1-206;Foxp1-204;Foxp1-220;Foxp1-230;Foxp1-225;Foxp1-201;Foxp1-205;Foxp1-207;Foxp1-208;Foxp1-226;Foxp1-228;Foxp1-221;Foxp1-222;Foxp1-210;Foxp1-214;Foxp1-209;Foxp1-203;Foxp1-218;Foxp1-231;Foxp1-215,Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,87,108655,ENSMUSG00000030067,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9707,cg07636089,-0.0000272,0.00000697,-3.897372444,0.0001192,loss,ns,0.00000238,0.0000118,0.201150985,0.840712433,pos,ns,-0.004802065,0.003468098,-1.384639542,0.167158488,neg,ns,0.776871566,0.0000103,0.000119268,0.086407354,0.931198384,pos,ns,0.884140037,Gm7481,Gm7481_Intron,12,50122580,50122629,50122580,50122581,50,+,CGAAGATTGACAAGAAATAGCTTTGACCTCACAGATTTGACCTTCAACCC,"Intron (Gm40418-201/Gm40418-201, intron 1 of 2)",12,49840757,49841751,995,2,Gm7481-201,-280829,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,37,665077,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16731,cg01923973,-0.00000174,0.00000881,-0.197916194,0.843240352,loss,ns,-0.00000301,0.000015,-0.200994603,0.840834605,neg,ns,0.001736876,0.004387224,0.395894052,0.69245552,pos,ns,0.159608118,-0.00023457,0.000150876,-1.554720712,0.121032888,neg,ns,0.602632678,Gm48101,Gm48101_Intergenic_upstream,12,86331204,86331253,86331204,86331205,50,-,CGCGGAGATTAATAGAAACGACACAATATTTACGTCGGCGCTACGAACAA,Distal Intergenic,12,86347977,86348097,121,1,Gm48101-201,-16773,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,4,,NA,mapped to different genes,12,86331199,86331261,63,*,63,8,0.412698413,3,0.126984127,0.00000033,CpGisland,TRUE,U11,Tr-P
9488,cg19174847,-0.0000191,0.00000372,-5.125102615,0.000000524,loss,yes,0.00000127,0.00000633,0.200606613,0.841137733,pos,ns,-0.002467555,0.001853591,-1.331229842,0.18409155,neg,ns,0.734966145,0.0000446,0.0000637,0.699224973,0.484935738,pos,ns,0.933969955,Fam120a,Fam120a_threeUTR,13,48879982,48880031,48880030,48880031,50,-,GAACCATGCAGAAGTTTAGCTCAAGTAGTAGTACTAATGGTCTACATCCG,3' UTR,13,48879219,48968017,88799,2,Fam120a-201,87986,Fam120a-201,Fam120a,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,8,218236,ENSMUSG00000038014,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2858,cg02571413,0.000183601,0.0000177,10.38629165,7.00E-22,gain,yes,0.00000602,0.00003,0.200524216,0.841202111,pos,ns,0.030038702,0.008798156,3.414204173,0.000724786,pos,ns,3.139790484,-0.000484857,0.000302568,-1.602475019,0.110069017,neg,ns,0.456173602,Zfp503,Zfp503_Promoter,14,21991419,21991468,21991467,21991468,50,-,ATTATTATTGCAGCCCGCCTCCCCTATTAATCTCCCTCGAAGATAATCCG,Promoter (1-2kb),14,21983959,21989601,5643,2,Zfp503-201,-1867,Zfp503-201,Zfp503,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,18,27,218820,ENSMUSG00000039081,mapped to different genes,14,21991208,21991513,306,*,306,17,0.513071895,0.84502924,0.055555556,3.96E-09,CpGisland,TRUE,U3,Pr-B
11548,cg05013986,0.0000189,0.00000806,2.348643805,0.019469716,gain,ns,-0.00000274,0.0000137,-0.200451036,0.841259289,neg,ns,0.004879782,0.004009266,1.217126061,0.224482003,pos,ns,0.648818472,-0.000151684,0.000137878,-1.100127358,0.272130187,neg,ns,0.799847701,Vax1,Vax1_Intergenic_downstream,19,59133261,59133310,59133309,59133310,50,+,CCTTGGCCTTCTCCGTTTTACATGGGAAAACATTAATGACGCTGACATCG,Distal Intergenic,19,59166598,59166980,383,2,Vax1-202,33670,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,18,22326,ENSMUSG00000006270,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22003,cg25343690,-0.0000304,0.000011,-2.772071503,0.005906936,loss,ns,-0.00000374,0.0000186,-0.200413944,0.84128827,neg,ns,-0.001826205,0.0054622,-0.334335093,0.738352788,neg,ns,0.131736081,-0.000181675,0.000187845,-0.967155451,0.334220245,neg,ns,0.779289525,Gm4991,Gm4991_Intergenic_downstream,X,110076539,110076588,110076539,110076540,50,+,CGCTTTCTCTGCAAAAACATCAGGCTGGCAGTAGTGACAGATGAACAGCT,Distal Intergenic,20,109910221,109911772,1552,1,Gm4991-201,166318,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,245573,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6279,cg23733711,0.00000104,0.00000456,0.22764825,0.820069775,gain,ns,-0.00000155,0.00000775,-0.200321431,0.841360555,neg,ns,0.00528453,0.002269591,2.328405669,0.020533456,pos,ns,1.687537944,-0.000308553,0.0000781,-3.953223095,0.0000956,neg,ns,0.893202329,Tenm2,Tenm2_Intron,11,36714596,36714645,36714644,36714645,50,+,CCCATGAGCGATTAATCTTCTAACACTAATTAGATATTTGCTAATTAGCG,"Intron (Tenm2-202/Tenm2, intron 4 of 30)",11,36006656,37235882,1229227,2,Tenm2-202,521237,Tenm2-202;Tenm2-208;Tenm2-201;Tenm2-204,Tenm2;Tenm2;Tenm2;Tenm2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,47,84,23964,ENSMUSG00000049336,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20259,cg00773909,0.0000442,0.00000943,4.691263224,0.00000408,gain,ns,-0.00000321,0.000016,-0.200239718,0.841424403,neg,ns,0.008922488,0.004691582,1.901807979,0.0581231,pos,ns,1.23565123,-0.000255337,0.000161343,-1.582569224,0.114539338,neg,ns,0.140932326,Hoxc5,Hoxc5_Intron,15,102972097,102972146,102972145,102972146,50,-,CAATAAGTCAAGGTCATAAAACAGTAATGTCAGGACGGTCTTGGTGCGCG,"Intron (Hoxc5-202/Hoxc5, intron 1 of 1)",15,102967443,103015676,48234,1,Hoxc5-202,4654,Hoxc10-201;Hoxc5-202;Hoxc9-202;Hoxc9-201,Hoxc10;Hoxc5;Hoxc9;Hoxc9,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,Intron,46,134,15424,ENSMUSG00000022485,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
24887,cg05030588,0.000072,0.00000582,12.35639182,8.64E-29,gain,yes,0.00000198,0.00000989,0.200222894,0.841437548,pos,ns,0.00975057,0.002898816,3.363638969,0.000865777,pos,ns,3.06259381,-0.0000238,0.0000997,-0.238754835,0.81145345,neg,ns,0.099699968,Pitx2,Pitx2_Exon,3,129213915,129213964,129213963,129213964,50,-,AGCCCGCCTCTGGTTTTAAGATGTTAGGCCAACAGGGAAGCGCGGAGCCG,Promoter (<=1kb),3,129213932,129216774,2843,1,Pitx2-208,0,Pitx2-207;Pitx2-201;Pitx2-203;Pitx2-204;Pitx2-208;Pitx2-202;Pitx2-206,Pitx2;Pitx2;Pitx2;Pitx2;Pitx2;Pitx2;Pitx2,0;0;0;0;0;0;-311,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,24,18741,ENSMUSG00000028023,mapped to different genes,3,129213666,129214125,460,*,460,39,0.67173913,0.776152981,0.084782609,5.23E-27,CpGisland,TRUE,U3,Pr-B
4173,cg20276480,0.0000161,0.00000839,1.912695573,0.056708298,gain,ns,-0.00000285,0.0000143,-0.200187989,0.841464822,neg,ns,0.006375687,0.004177505,1.526194828,0.127980937,pos,ns,0.892854715,-0.000159506,0.000143664,-1.110271066,0.267742694,neg,ns,0.564027534,Egln2,Egln2_Exon,7,27160293,27160342,27160341,27160342,50,-,CGTCCCAGTTCTGATTCAGGTAATAGATACAGGTGATGCAGCGCCCATCG,"Exon (Egln2-201/Egln2, exon 3 of 6)",7,27158658,27166802,8145,2,Egln2-201,6460,Cyp2t4-202;Cyp2t4-201;Egln2-201;Egln2-204;Egln2-202,Cyp2t4;Cyp2t4;Egln2;Egln2;Egln2,6579;5211;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,112406,ENSMUSG00000058709,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4542,cg25087729,0.0000054,0.00000423,1.274387492,0.203480589,gain,ns,0.00000144,0.00000719,0.200102713,0.841531455,pos,ns,0.003755087,0.002107629,1.781663993,0.075782906,pos,ns,1.120428744,-0.0000993,0.0000725,-1.369667383,0.171782055,neg,ns,0.073613175,Myt1l,Myt1l_fiveUTR,12,29535012,29535061,29535012,29535013,50,+,CGACTTCAGGCCTGTTAGTTTCCTGTCTGAAAGCATTATTACTTTTGTCC,5' UTR,12,29528384,29920539,392156,1,Myt1l-205,6628,Myt1l-205;Myt1l-202;Myt1l-206;Myt1l-210;Myt1l-207;Myt1l-201;Myt1l-208,Myt1l;Myt1l;Myt1l;Myt1l;Myt1l;Myt1l;Myt1l,0;0;6611;0;0;0;-161,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,4,17933,ENSMUSG00000061911,conserved gene and region,12,29534754,29535013,260,*,260,16,0.607692308,0.666987334,0.061538462,2.90E-09,CpGisland,TRUE,NA,NRS
13316,cg11373055,0.000124067,0.000015,8.278975957,3.75E-15,gain,yes,-0.00000509,0.0000255,-0.199983506,0.841624603,neg,ns,0.021266198,0.007458597,2.851233106,0.004647204,pos,ns,2.332808222,-0.0000304,0.000256501,-0.118690484,0.905597449,neg,ns,0.116014076,Egr3,Egr3_Intron,14,70078543,70078592,70078543,70078544,50,+,CGGGTCTGAAACTACCTGTAGCTGCAGCTACCTGCCCGCCCCACCTCGGG,"Intron (Egr3-201/Egr3, intron 2 of 2)",14,70077203,70079955,2753,1,Egr3-201,1340,Egr3-201;Egr3-204;Egr3-203;Egr3-202,Egr3;Egr3;Egr3;Egr3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,19,13655,ENSMUSG00000033730,conserved gene and region,14,70078306,70079015,710,*,710,70,0.654929578,0.919416901,0.098591549,8.62E-53,CpGisland,TRUE,U3,Pr-B
20810,cg07784746,-0.0000264,0.00000385,-6.860692094,3.73E-11,loss,yes,0.0000013,0.00000653,0.19942353,0.842062198,pos,ns,-0.002357436,0.00191452,-1.231345694,0.219126913,neg,ns,0.65930428,0.0000119,0.0000658,0.18014035,0.857160084,pos,ns,0.931613298,Rcn1,Rcn1_Intergenic_upstream,2,105447810,105447859,105447858,105447859,50,+,GGTCTGATATGGTAATTACTCCACTGTTCAGTGGTGACCACATTGAACCG,Distal Intergenic,2,105386291,105399319,13029,2,Rcn1-201,-48491,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,19672,ENSMUSG00000005973,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16758,cg20239387,-0.00000344,0.00000429,-0.802346925,0.422966962,loss,ns,0.00000145,0.00000728,0.199405309,0.842076437,pos,ns,0.001846057,0.002133457,0.865289317,0.387549132,pos,ns,0.411673232,-0.0000877,0.0000734,-1.195481899,0.2328125,neg,ns,0.911506654,Tia1,Tia1_threeUTR,6,86424989,86425038,86425037,86425038,50,+,GGTGGCCAGTGGCTTGGTGGAAGACAAATCAGAACTAACTGGGCAACCCG,Promoter (<=1kb),6,86425001,86425700,700,1,Tia1-220,0,Gm44790-201;Tia1-203;Tia1-202;Tia1-218;Tia1-212;Tia1-201;Tia1-211;Tia1-221;Tia1-223;Tia1-205;Tia1-206;Tia1-204;Tia1-213;Tia1-217;Tia1-209;Tia1-226;Tia1-207;Tia1-210;Tia1-225;Tia1-228;Tia1-220;Tia1-208,Gm44790;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1;Tia1,-1620;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;-438,TRUE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,7,21841,ENSMUSG00000071337,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13240,cg20737275,0.0000218,0.0000055,3.973026891,0.0000883,gain,ns,0.00000186,0.00000934,0.199394648,0.842084769,pos,ns,0.002525818,0.002735533,0.92333641,0.356550025,pos,ns,0.447879529,0.0000168,0.0000941,0.178143961,0.858726273,pos,ns,0.61151102,Nlgn2,Nlgn2_Exon,11,69833997,69834046,69833997,69833998,50,+,CGTAGAGGTTGAGGTACAGGCAGTCCTCGCTCTGGTTCTGCACGTAGGTG,Promoter (<=1kb),11,69823122,69834849,11728,2,Nlgn2-201,803,Nlgn2-201;Nlgn2-202;Nlgn2-203;Tmem256-203;Tmem256-201;Tmem256-205;Tmem256-204;Tmem256-202,Nlgn2;Nlgn2;Nlgn2;Tmem256;Tmem256;Tmem256;Tmem256;Tmem256,0;0;0;-4468;-4478;-4509;-4517;-4592,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,17,216856,ENSMUSG00000051790,conserved gene and region,11,69833903,69834425,523,*,523,51,0.709369025,0.77609986,0.09751434,2.27E-38,CpGisland,TRUE,NA,NRS
3270,cg05275734,-0.0000233,0.00000873,-2.672216147,0.007933686,loss,ns,-0.00000296,0.0000148,-0.199391853,0.842086954,neg,ns,-0.008899682,0.00434554,-2.048003787,0.041401833,neg,ns,1.382980434,0.000257009,0.000149443,1.719781754,0.086470189,pos,ns,0.113084844,Kmt2e,Kmt2e_Intron,5,23435890,23435939,23435938,23435939,50,-,TTCTAAAAATGGCGGCCCCAGGCTGATGTTGTGGTAATCTAATCAGCTCG,"Intron (Kmt2e-207/Kmt2e, intron 1 of 12)",5,23434441,23486400,51960,1,Kmt2e-207,1449,Kmt2e-207;Kmt2e-201;Kmt2e-202,Kmt2e;Kmt2e;Kmt2e,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,8,69188,ENSMUSG00000029004,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
27946,cg19573972,0.000000109,0.00000369,0.029473135,0.97650621,gain,ns,0.00000125,0.00000626,0.199383872,0.84209319,pos,ns,-0.001304255,0.001835209,-0.710684832,0.47781389,neg,ns,0.32074123,0.00000837,0.0000631,0.132602419,0.894593848,pos,ns,0.912181109,Rps6kc1,Rps6kc1_threeUTR,1,190808915,190808964,190808963,190808964,50,-,TCCTCAGAGATGATGTACTTATGCAGACACACCATGTTGGGCACACAGCG,3' UTR,1,190700202,190911747,211546,2,Rps6kc1-204,102783,Rps6kc1-204;Rps6kc1-206;Rps6kc1-203;Rps6kc1-201;Rps6kc1-205;Rps6kc1-208;Rps6kc1-207,Rps6kc1;Rps6kc1;Rps6kc1;Rps6kc1;Rps6kc1;Rps6kc1;Rps6kc1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,29,320119,ENSMUSG00000089872,conserved gene but different region,1,190808850,190808998,149,*,149,12,0.597315436,0.908536585,0.080536913,0.000000023,CpGisland,TRUE,NA,NRS
16897,cg27216196,-0.0000435,0.000014,-3.103341151,0.002089835,loss,ns,-0.00000474,0.0000238,-0.199225779,0.842216742,neg,ns,-0.015175297,0.006974466,-2.175836423,0.030322494,neg,ns,1.51823508,0.000302345,0.000239851,1.26055261,0.208418043,pos,ns,0.723105438,Kirrel,Kirrel_Exon,3,87161026,87161075,87161026,87161027,50,-,CGTGCCCAGGAGACTGTAATTATCTGCTAAGTGTGAAAGCCAGAATGATT,"Exon (Gm37855-201/Gm37855-201, exon 2 of 2)",3,87078593,87174700,96108,2,Kirrel-203,13625,Kirrel-203;Kirrel-202;Kirrel-201,Kirrel;Kirrel;Kirrel,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,170643,ENSMUSG00000041734,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4473,cg13138199,-0.00000747,0.00000528,-1.413076555,0.158636471,loss,ns,-0.00000179,0.00000898,-0.199045306,0.84235779,neg,ns,-0.002012103,0.002629686,-0.765149306,0.444764751,neg,ns,0.35186964,-0.00000061,0.0000904,-0.006750114,0.994618571,neg,ns,0.860932739,Cfap77,Cfap77_Intron,2,28997644,28997693,28997692,28997693,50,+,AGGTCCTTCATTTGCATTTACATGATCTCGCTGTGCAGCTTATGAGATCG,"Intron (Cfap77-203/Cfap77, intron 1 of 6)",2,28926949,29055024,128076,2,Cfap77-203,57331,Cfap77-203;Cfap77-204;Cfap77-205;Cfap77-202,Cfap77;Cfap77;Cfap77;Cfap77,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,6,329375,ENSMUSG00000079502,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8293,cg23043074,0.00000158,0.00000192,0.819138336,0.413336773,gain,ns,0.00000065,0.00000327,0.198824397,0.842530446,pos,ns,0.002181106,0.000957928,2.276899293,0.023473444,pos,ns,1.62942318,-0.000097,0.0000329,-2.944884629,0.003475205,neg,ns,0.947130771,Ebf1,Ebf1_Intron,11,44963709,44963758,44963757,44963758,50,-,AATCCAAGCATGATTGAAAACAAGATGTGTTAAATCAATGCGGTTTATCG,"Intron (Ebf1-203/Ebf1, intron 10 of 15)",11,44617317,45004995,387679,1,Ebf1-203,346392,Ebf1-203;Ebf1-202;Ebf1-201;Ebf1-206,Ebf1;Ebf1;Ebf1;Ebf1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,80,13591,ENSMUSG00000057098,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2665,cg02756192,-0.00000474,0.00000192,-2.467731827,0.014136991,loss,ns,-0.000000648,0.00000327,-0.198535299,0.842756408,neg,ns,-0.001157615,0.000956738,-1.209960877,0.227215733,neg,ns,0.643561601,0.0000275,0.0000329,0.836485816,0.403525979,pos,ns,0.041253796,Peli1,Peli1_Promoter,11,21092049,21092098,21092097,21092098,50,-,TCAAGTTAGTCATTCTTTTTATTGTTATGATTGTTGTCATCATCTCTGCG,Promoter (<=1kb),11,21091291,21143005,51715,1,Peli1-204,758,Peli1-204;Peli1-201;Peli1-203,Peli1;Peli1;Peli1,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,1,3,67245,ENSMUSG00000020134,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
21731,cg18981866,-0.00000788,0.00000246,-3.205620137,0.001488248,loss,ns,-0.000000828,0.00000417,-0.198405923,0.842857535,neg,ns,0.000209251,0.00122286,0.171116232,0.864244009,pos,ns,0.063363622,-0.00000808,0.0000421,-0.192073469,0.847810412,neg,ns,0.94626546,Zfhx3,Zfhx3_Intron,8,108926706,108926755,108926706,108926707,50,-,CGATGAGAACCTCTGGCTTACGGAAAGTAGCATGAATTAATAATCATTTA,"Intron (Zfhx3-204/Zfhx3, intron 11 of 15)",8,107942644,108961630,1018987,1,Zfhx3-204,984062,Zfhx3-204;Zfhx3-201,Zfhx3;Zfhx3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,114,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18251,cg26161880,0.0000306,0.00000425,7.203866764,4.47E-12,gain,yes,-0.00000143,0.00000722,-0.198375874,0.842881022,neg,ns,0.004543246,0.002114089,2.149032834,0.032405802,pos,ns,1.489377223,-0.000108056,0.0000727,-1.486263183,0.138225812,neg,ns,0.110555484,Ap3b1,Ap3b1_Intergenic_downstream,13,94596519,94596568,94596519,94596520,50,+,CGCAGTGCCAGGGGCCTCTTAGCGGAAGAGCGCTTCTCCAAATTGAAATA,Distal Intergenic,13,94542303,94547867,5565,1,Ap3b1-202,54216,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,33,55,11774,ENSMUSG00000021686,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27197,cg09784334,0.00000187,0.00000151,1.236618309,0.217164868,gain,ns,-0.00000051,0.00000257,-0.198294221,0.842944847,neg,ns,0.001069731,0.000752934,1.420750431,0.15639437,pos,ns,0.805778885,-0.0000495,0.0000259,-1.911370636,0.056878914,neg,ns,0.963935997,Mafb,Mafb_Intergenic_upstream,2,160396144,160396193,160396192,160396193,50,-,GGTGCTAGCAATTTGTTGCGGGTGACATAACATTGCAAATTGATTAATCG,Distal Intergenic,2,160363703,160367065,3363,2,Mafb-201,-29128,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,22,16658,ENSMUSG00000074622,conserved gene but different region,2,160396144,160396305,162,*,162,11,0.432098765,1.485,0.067901235,0.000000604,CpGisland,TRUE,NA,NRS
437,cg11437639,-0.0000362,0.0000102,-3.542394404,0.000457477,loss,ns,-0.00000344,0.0000174,-0.198293897,0.842945101,neg,ns,-0.001545697,0.005089192,-0.30372148,0.761543841,neg,ns,0.11830509,-0.000277388,0.000175017,-1.584919858,0.114004086,neg,ns,0.76189452,Gm8797,Gm8797_Intergenic_downstream,3,5864317,5864366,5864365,5864366,50,+,GCAATGTACTTCAGAAATAGGGTCCTGTTCATTCTTTGCTTTACAAATCG,Distal Intergenic,3,5750806,5751295,490,1,Gm8797-201,113511,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,4,667759,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10469,cg21215094,-0.00000948,0.00000405,-2.34289395,0.019766902,loss,ns,-0.00000136,0.00000687,-0.19821104,0.843009868,neg,ns,-0.001492508,0.002013315,-0.741318577,0.459061501,neg,ns,0.338129128,0.00000531,0.0000692,0.07674322,0.938877327,pos,ns,0.911551168,Npas3,Npas3_Intron,12,53723298,53723347,53723298,53723299,50,+,CGACGTGTTATGATTGGAGCAATAGCATTTAAGAGTCCAGAGGCAAGTCA,"Intron (Npas3-204/Npas3, intron 3 of 10)",12,53248157,54069532,821376,1,Npas3-204,475141,Npas3-204;Npas3-201;Npas3-203,Npas3;Npas3;Npas3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,83,103,27386,ENSMUSG00000021010,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18851,cg13645387,-0.0000344,0.00000641,-5.364072567,0.00000016,loss,yes,0.00000216,0.0000109,0.19811016,0.843088726,pos,ns,-0.005638492,0.00318947,-1.767845739,0.078070326,neg,ns,1.107514005,-0.000000179,0.000109686,-0.001627617,0.998702397,neg,ns,0.867488535,Ppip5k2,Ppip5k2_Exon,1,97716547,97716596,97716595,97716596,50,-,GTTGGGTGTCGAGCAAATGAGATAGAAAACCTTTTAACAGCAGAACCGCG,"Exon (Ppip5k2-202/Ppip5k2, exon 28 of 31)",1,97706048,97770411,64364,2,Ppip5k2-201,53815,Ppip5k2-203;Ppip5k2-201;Ppip5k2-202;Ppip5k2-205;Ppip5k2-207;Ppip5k2-206,Ppip5k2;Ppip5k2;Ppip5k2;Ppip5k2;Ppip5k2;Ppip5k2,-1398;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,10,227399,ENSMUSG00000040648,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24377,cg24382107,-0.0000189,0.000011,-1.720613981,0.086318742,loss,ns,-0.00000369,0.0000186,-0.198070413,0.843119796,neg,ns,-0.014091926,0.00545736,-2.582187263,0.010276172,neg,ns,1.988168632,0.000220013,0.000187678,1.172291362,0.241980194,pos,ns,0.124977376,Chd4,Chd4_Promoter,6,125089195,125089244,125089243,125089244,50,-,AGGCCTCCTGCGACCAGAGGCAAGAGTATTATGGGCTGGCAAGGCCTTCG,Promoter (6-7kb),6,125095981,125130591,34611,1,Chd4-201,-6786,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,4,15,107932,ENSMUSG00000063870,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
24928,cg12658254,-0.00000183,0.00000135,-1.363643385,0.173669228,loss,ns,-0.000000453,0.00000229,-0.19802138,0.843158126,neg,ns,0.000192376,0.000669569,0.287313439,0.774064293,pos,ns,0.111222966,-0.0000165,0.000023,-0.715981953,0.474541465,neg,ns,0.960363955,Stk35,Stk35_Exon,2,129811031,129811080,129811031,129811032,50,+,CGCTGCTAGAAAACCCAAAGATGGAGTTGCACATCCCCCAAAAACGCAGG,"Exon (Stk35-201/Stk35, exon 3 of 4)",2,129800517,129828974,28458,1,Stk35-201,10514,Stk35-201;Stk35-202,Stk35;Stk35,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,67333,ENSMUSG00000037885,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5098,cg16332226,-0.000031,0.00000596,-5.195142464,0.000000372,loss,yes,-0.00000201,0.0000101,-0.19794856,0.843215051,neg,ns,-0.001348428,0.002968215,-0.454289241,0.649938574,neg,ns,0.187127687,-0.000129777,0.000102077,-1.271364402,0.20455211,neg,ns,0.85849007,Dnm1,Dnm1_threeUTR,2,32310453,32310502,32310501,32310502,50,-,TGGCTGACGCTCCTCAGGGGTCACTGATAGTGATTCTGAAAGACAGCACG,3' UTR,2,32308471,32353263,44793,2,Dnm1-204,42761,Dnm1-204;Dnm1-209;Dnm1-202;Dnm1-201;Dnm1-203;Dnm1-205;Dnm1-214;Dnm1-206;Dnm1-216;Dnm1-211;Dnm1-212;Dnm1-217;Dnm1-208;Dnm1-215;Dnm1-213;Dnm1-210;Golga2-203;Golga2-212;Golga2-213;Golga2-202;Golga2-201;Golga2-204,Dnm1;Dnm1;Dnm1;Dnm1;Dnm1;Dnm1;Dnm1;Dnm1;Dnm1;Dnm1;Dnm1;Dnm1;Dnm1;Dnm1;Dnm1;Dnm1;Golga2;Golga2;Golga2;Golga2;Golga2;Golga2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;6829;2575;22200;22200;22200;22140;22107;13373,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,16,13429,ENSMUSG00000026825,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24782,cg00735249,-0.00000115,0.00000387,-0.297124523,0.766570437,loss,ns,-0.0000013,0.00000658,-0.197874379,0.84327304,neg,ns,-0.000505999,0.001927333,-0.262538634,0.793080589,neg,ns,0.10068268,-0.0000135,0.0000663,-0.204060596,0.838440043,neg,ns,0.903459222,Csmd2,Csmd2_Exon,4,128452463,128452512,128452511,128452512,50,-,TTACCCAGAACCCTACCCGCCAGGCAAGGAGTGTGACTGGAAAGTGACCG,"Exon (Csmd2-205/Csmd2, exon 28 of 71)",4,127988044,128567656,579613,1,Csmd2-205,464419,Csmd2-205,Csmd2,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,9,329942,ENSMUSG00000028804,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19444,cg05688812,-0.0000396,0.0000177,-2.236207293,0.026049428,loss,ns,-0.00000595,0.00003,-0.197863117,0.843281844,neg,ns,-0.010995537,0.008802629,-1.249119623,0.212563698,neg,ns,0.672510903,0.0000944,0.000302722,0.311866863,0.755351354,pos,ns,0.680110881,Gm12689,Gm12689_Intergenic_downstream,4,99318985,99319034,99319033,99319034,50,-,AAATTAGGTTGAAGACCACATACATTTCTTAAAATGAGGCTGGCTGGTCG,Distal Intergenic,4,99295900,99297258,1359,1,Gm12689-201,23134,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,12,26,100137011,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18230,cg11393829,-0.00000491,0.00000215,-2.282485972,0.023137725,loss,ns,-0.000000722,0.00000365,-0.197819413,0.843316009,neg,ns,0.000603471,0.001069573,0.564216199,0.57301498,pos,ns,0.241834024,0.0000127,0.0000368,0.344106823,0.730999247,pos,ns,0.931146678,Ap3b1,Ap3b1_Intron,13,94546243,94546292,94546291,94546292,50,-,TTGACAAAAGTACTGGCTTTGTACAACATTTCCTTTAATTACATGCTGCG,"Intron (Ap3b1-201/Ap3b1, intron 25 of 26)",13,94358960,94566317,207358,1,Ap3b1-201,187283,Ap3b1-201;Ap3b1-205;Ap3b1-204;Ap3b1-203;Ap3b1-202,Ap3b1;Ap3b1;Ap3b1;Ap3b1;Ap3b1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,55,11774,ENSMUSG00000021686,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16737,cg07493901,-0.00000192,0.00000159,-1.212905536,0.226089385,loss,ns,0.000000532,0.00000269,0.197728323,0.843387219,pos,ns,0.000558999,0.000788926,0.708557468,0.479131603,pos,ns,0.319545183,-0.00000122,0.0000271,-0.044945267,0.964179873,neg,ns,0.063086343,Med13,Med13_Exon,11,86357453,86357502,86357501,86357502,50,-,CACTCACCAGGCAGAAGAGGTTACAGTGACAATCTTCCAGGCTGGCCCCG,Promoter (<=1kb),11,86267033,86357602,90570,2,Med13-201,100,Med13-201,Med13,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,12,327987,ENSMUSG00000034297,conserved gene and region,11,86357501,86357801,301,*,301,49,0.803986711,1.017382907,0.162790698,1.99E-49,CpGisland,TRUE,U1,Pr-A
9592,cg18289644,-0.00000213,0.000000749,-2.849255563,0.004675436,loss,ns,0.000000252,0.00000127,0.197708248,0.843402913,pos,ns,0.000143101,0.000372818,0.383835622,0.701363409,pos,ns,0.154056896,-0.0000255,0.0000128,-1.991704372,0.047280624,neg,ns,0.011486516,Epc2,Epc2_fiveUTR,2,49451786,49451835,49451834,49451835,50,-,TCCTGTAAGGCGGGGAGACAATGAGTAAACTCTCCTTCCGAGCGCGGGCG,Promoter (<=1kb),2,49451486,49551948,100463,1,Epc2-201,300,Epc2-201,Epc2,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,14,227867,ENSMUSG00000069495,conserved gene and region,2,49451467,49451969,503,*,503,63,0.731610338,0.950850662,0.125248509,7.63E-55,CpGisland,TRUE,U1,Pr-A
14147,cg02581097,0.0000106,0.00000204,5.210007734,0.000000345,gain,yes,0.000000683,0.00000346,0.197604863,0.843483736,pos,ns,0.001867707,0.001012874,1.843966801,0.066142134,pos,ns,1.179521795,-0.0000255,0.0000348,-0.732251625,0.464568243,neg,ns,0.056684315,Hoxd9,Hoxd9_Intron,2,74698884,74698933,74698932,74698933,50,-,TCGAATGTGCAAAACTGATAGTTTTACTAACCTATAAAAACGTCTAGACG,"Intron (Hoxd9-201/Hoxd9, intron 1 of 1)",2,74697727,74700208,2482,1,Hoxd9-201,1157,Hoxd10-201;Hoxd9-201,Hoxd10;Hoxd9,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,8,15438,ENSMUSG00000043342,mapped to different genes,2,74698885,74699026,142,*,142,11,0.478873239,1.381078691,0.077464789,0.00000016,CpGisland,TRUE,U13,Hc-P
2455,cg20565386,-0.00000972,0.00000253,-3.845989778,0.000145746,loss,ns,-0.000000847,0.00000429,-0.197476985,0.84358371,neg,ns,0.000175468,0.001257283,0.139560918,0.889097547,pos,ns,0.051050588,-0.0000748,0.0000432,-1.73075293,0.084490912,neg,ns,0.945250143,Clasrp,Clasrp_threeUTR,7,19584747,19584796,19584747,19584748,50,-,CGGGAATTAGACGGGCGAGTTCCAAATTCTTACTGACTTTGGCAGCTCCT,3' UTR,7,19581035,19604486,23452,2,Clasrp-201,19690,Clasrp-201;Clasrp-210;Clasrp-211;Clasrp-212;Clasrp-202;Clasrp-208;Clasrp-207;Clasrp-209;Clasrp-205;Clasrp-206;Clasrp-203;Clasrp-213;Zfp296-201,Clasrp;Clasrp;Clasrp;Clasrp;Clasrp;Clasrp;Clasrp;Clasrp;Clasrp;Clasrp;Clasrp;Clasrp;Zfp296,0;-1761;0;-3065;0;0;0;0;0;0;1895;1062;7460,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,3,53609,ENSMUSG00000061028,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26394,cg25769211,0.000048,0.00000564,8.510347717,7.55E-16,gain,yes,-0.00000189,0.00000958,-0.197411488,0.843634915,neg,ns,0.009047805,0.002807049,3.223244349,0.001402442,pos,ns,2.853115215,-0.000158078,0.0000965,-1.637531909,0.10253401,neg,ns,0.144362387,Nkx2-2,Nkx2-2_Intron,2,147188495,147188544,147188543,147188544,50,+,TCATTCATTTCTGAATCCGTCCACAATATTAAGGAAACCCCTTCATGTCG,"Intron (Nkx2-2os-201/Nkx2-2os-201, intron 1 of 5)",2,147186305,147194243,7939,2,Nkx2-2-202,5699,Nkx2-2-203;Nkx2-2-201;Nkx2-2-202;Nkx2-2-204,Nkx2-2;Nkx2-2;Nkx2-2;Nkx2-2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,30,18088,ENSMUSG00000027434,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
22527,cg04925631,0.0000535,0.00000984,5.436489666,0.00000011,gain,yes,-0.0000033,0.0000167,-0.197399261,0.843644475,neg,ns,0.008727064,0.004899324,1.781279196,0.075845852,pos,ns,1.120068166,-0.000235874,0.000168487,-1.399952014,0.162527657,neg,ns,0.400024897,Foxe3,Foxe3_Promoter,4,114929378,114929427,114929426,114929427,50,-,AGTGGCTGGGCTGGGCAGTCCTTTGTCTGACCACACTGGGTGGATATTCG,Promoter (3-4kb),4,114925147,114926013,867,2,Foxe3-201,-3414,Foxe3-201,Foxe3,-3365,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,4,4,30923,ENSMUSG00000044518,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
3465,cg00504554,-0.00000433,0.00000203,-2.132880334,0.033719844,loss,ns,0.000000681,0.00000345,0.197215189,0.843788387,pos,ns,-0.001141234,0.001011147,-1.128652456,0.259917151,neg,ns,0.585165062,0.0000387,0.0000348,1.11172575,0.267117523,pos,ns,0.950897747,Bcl11a,Bcl11a_Exon,11,24163219,24163268,24163267,24163268,50,+,ACACGCACAGAACACTCATGGATTAAGAATCTACTTAGAAAGCGAACACG,"Exon (Bcl11a-201/Bcl11a, exon 4 of 5)",11,24078056,24173194,95139,1,Bcl11a-201,85163,Bcl11a-201;Bcl11a-203;Bcl11a-202;Bcl11a-204;Bcl11a-206,Bcl11a;Bcl11a;Bcl11a;Bcl11a;Bcl11a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,51,98,14025,ENSMUSG00000000861,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6447,cg00311846,0.0000501,0.0000054,9.262943788,3.43E-18,gain,yes,0.00000181,0.00000918,0.197211171,0.843791528,pos,ns,0.001875257,0.002689733,0.697190995,0.486205785,pos,ns,0.313179878,0.000112287,0.0000925,1.213922364,0.225701375,pos,ns,0.107329695,Dgki,Dgki_fiveUTR,6,37299901,37299950,37299901,37299902,50,+,CGCCGCTGGCAGGGGCAGCAAATGGCAGCCCCTTCCCGCAGCATCCATCC,Promoter (<=1kb),6,36846022,37299974,453953,2,Dgki-203,24,Dgki-203;Dgki-202;Dgki-205;Dgki-208;Dgki-201;Dgki-204,Dgki;Dgki;Dgki;Dgki;Dgki;Dgki,0;0;0;0;0;-157,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,7,320127,ENSMUSG00000038665,conserved gene but different region,6,37299523,37299987,465,*,465,52,0.724731183,0.859886202,0.111827957,1.80E-42,CpGisland,TRUE,U3,Pr-B
8888,cg26286303,-0.0000131,0.00000506,-2.586957687,0.010138013,loss,ns,0.00000169,0.0000086,0.196991044,0.843963636,pos,ns,-0.002413316,0.002519009,-0.958042045,0.338788124,neg,ns,0.470071822,-0.000182793,0.0000866,-2.110077277,0.035652716,neg,ns,0.852567951,Cyfip2,Cyfip2_Exon,11,46258695,46258744,46258695,46258696,50,+,CGGCCCTGTGTGCCACCAGTGGGGTGAAACAAAGCCCTCGGGGACCACTG,"Exon (Cyfip2-204/Cyfip2, exon 6 of 22)",11,46193850,46312358,118509,2,Cyfip2-205,53614,Cyfip2-205;Cyfip2-201;Cyfip2-202;Cyfip2-204,Cyfip2;Cyfip2;Cyfip2;Cyfip2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,8,76884,ENSMUSG00000020340,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20565,cg11642252,0.0000134,0.00000483,2.777972725,0.005803316,gain,ns,-0.00000161,0.0000082,-0.196868281,0.844059623,neg,ns,-0.004995913,0.00240166,-2.080191631,0.03832912,neg,ns,1.416471152,0.0000352,0.0000826,0.426614079,0.669956546,pos,ns,0.852444527,Syt6,Syt6_threeUTR,3,103587552,103587601,103587552,103587553,50,-,CGCAAATGCAAGCTGCAGACCCGGGTGCACCGCAAGACCCTGAACCCCAC,3' UTR,3,103575231,103630946,55716,1,Syt6-205,12321,Syt6-205;Syt6-201;Syt6-206;Syt6-207;Syt6-208;Syt6-210;Syt6-209;Syt6-202;Syt6-203;Syt6-204,Syt6;Syt6;Syt6;Syt6;Syt6;Syt6;Syt6;Syt6;Syt6;Syt6,0;0;0;0;0;0;11471;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,4,54524,ENSMUSG00000027849,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20906,cg22568695,-0.0000663,0.0000116,-5.704046841,2.73E-08,loss,yes,0.00000388,0.0000197,0.196756108,0.844147331,pos,ns,-0.012611051,0.005783477,-2.180531155,0.029969753,neg,ns,1.52331684,-0.0000314,0.000198893,-0.157745194,0.874760285,neg,ns,0.865865042,Relch,Relch_Intron,1,105686751,105686800,105686799,105686800,50,-,CTATGGAAAACATTCACCAGTTTGCTTGCAAATCAACTCTGCTGCATGCG,"Intron (Relch-208/Relch, intron 3 of 4)",1,105663861,105687141,23281,1,Relch-208,22890,Relch-208;Relch-205;Relch-201;Relch-202;Relch-210;Relch-212,Relch;Relch;Relch;Relch;Relch;Relch,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,6,227446,ENSMUSG00000026319,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14612,cg25732341,0.0000128,0.00000621,2.063775729,0.039870968,gain,ns,-0.00000208,0.0000106,-0.196712545,0.844181393,neg,ns,0.003961613,0.003093024,1.28082211,0.201213552,pos,ns,0.696342773,0.0000516,0.000106369,0.484890055,0.62809679,pos,ns,0.162730792,Skor2,Skor2_Intergenic_upstream,18,76845799,76845848,76845847,76845848,50,+,AGGGCTATGGCTTTTTGTTTTTTAAGCAGCCGCCTTCCTTCTCTGTGTCG,Distal Intergenic,18,76856405,76900342,43938,1,Skor2-201,-10557,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,7,664805,ENSMUSG00000091519,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
5484,cg22666763,-0.00000977,0.00000405,-2.411419979,0.016471671,loss,ns,0.00000135,0.00000688,0.196636523,0.844240836,pos,ns,-0.00162741,0.002016287,-0.807131998,0.420209268,neg,ns,0.376534373,0.000145561,0.0000693,2.099243069,0.036603861,pos,ns,0.898222531,Mvb12b,Mvb12b_Intron,2,34065834,34065883,34065834,34065835,50,-,CGCGCAAATTGCAAAGTTGTGAATATGTTCTCAGATAATGAGCCTTCCCA,"Intron (C230014O12Rik-201/C230014O12Rik-201, intron 1 of 3)",2,33729953,33887946,157994,2,Mvb12b-201,-177937,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,28,47,72543,ENSMUSG00000038740,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15190,cg16024200,-0.0000106,0.00000252,-4.21373731,0.000033,loss,ns,-0.000000842,0.00000428,-0.196572254,0.844291091,neg,ns,-0.002449247,0.00125484,-1.951839797,0.051857395,neg,ns,1.285189306,0.0000427,0.0000432,0.989971147,0.322960287,pos,ns,0.939159599,Ddx17,Ddx17_threeUTR,15,79533144,79533193,79533144,79533145,50,+,CGCTCGCTCTGTGAACTGGCTTAGATGCTTCTCTGTAGCCCCATTTGGTT,3' UTR,15,79527736,79546741,19006,2,Ddx17-201,13548,Ddx17-201;Ddx17-203;Ddx17-204;Ddx17-202,Ddx17;Ddx17;Ddx17;Ddx17,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,9,14,67040,ENSMUSG00000055065,conserved gene and region,15,79532980,79533149,170,*,170,13,0.594117647,0.886126704,0.076470588,9.43E-09,CpGisland,TRUE,U10,Tr-S
4876,cg06992077,-0.00000261,0.00000143,-1.82487088,0.068982789,loss,ns,0.000000477,0.00000243,0.196480794,0.844362607,pos,ns,-0.000818679,0.000711768,-1.15020551,0.250945746,neg,ns,0.600420163,0.0000451,0.0000245,1.840658875,0.066627159,pos,ns,0.958025608,Pbrm1,Pbrm1_Exon,14,31110453,31110502,31110453,31110454,50,+,CGAGCAGCACAGCAACAGCAGCCGAGTGCTTCTCCCCGAGCAGGCACCCC,"Exon (Pbrm1-208/Pbrm1, exon 29 of 33)",14,31019138,31120041,100904,1,Pbrm1-208,91315,Pbrm1-208;Pbrm1-207;Pbrm1-206;Pbrm1-203;Pbrm1-217;Pbrm1-212;Pbrm1-202;Pbrm1-205;Pbrm1-210;Pbrm1-201;Pbrm1-204;Smim4-204;Smim4-202,Pbrm1;Pbrm1;Pbrm1;Pbrm1;Pbrm1;Pbrm1;Pbrm1;Pbrm1;Pbrm1;Pbrm1;Pbrm1;Smim4;Smim4,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,5,66923,ENSMUSG00000042323,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3596,cg00115173,-2.27E-08,0.00000327,-0.006941757,0.994465789,loss,ns,-0.00000109,0.00000556,-0.196368225,0.844450632,neg,ns,0.000501179,0.001627806,0.307886372,0.758375557,pos,ns,0.120115673,-0.0000884,0.000056,-1.579102883,0.115332265,neg,ns,0.936199322,Klhl32,Klhl32_Exon,4,24649737,24649786,24649785,24649786,50,-,TTTTTCATGGGTGCTATCTCTGCCCAGGAATTACTGCGGGGGTCATAGCG,"Exon (Klhl32-204/Klhl32, exon 7 of 11)",4,24612554,24800890,188337,2,Klhl32-203,151104,Klhl32-203;Klhl32-204;Klhl32-207;Klhl32-205;Klhl32-201;Klhl32-202;Klhl32-206,Klhl32;Klhl32;Klhl32;Klhl32;Klhl32;Klhl32;Klhl32,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,10,212390,ENSMUSG00000040387,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9012,cg13191957,0.000101204,0.0000143,7.078326172,9.79E-12,gain,yes,-0.00000477,0.0000243,-0.196324152,0.844485096,neg,ns,-0.002012918,0.007116143,-0.282866427,0.777468016,neg,ns,0.109317468,0.000289127,0.000244724,1.181443776,0.238332022,pos,ns,0.688950037,Arl3,Arl3_Intergenic_downstream,19,46530572,46530621,46530572,46530573,50,-,CGATGTGAGAGCTTTTTAAGGACCTTGTAATTTTTCTGGAATTAAACCTC,Distal Intergenic,19,46531135,46542813,11679,2,Arl3-203,12241,Arl3-201;Arl3-205;Arl3-204;Arl3-203,Arl3;Arl3;Arl3;Arl3,42472;42577;27771;12192,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,56350,ENSMUSG00000025035,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
16423,cg18522689,-0.000000412,0.00000111,-0.372765274,0.709577886,loss,ns,-0.000000369,0.00000188,-0.196273531,0.844524681,neg,ns,0.001114973,0.00055065,2.024831264,0.04374158,pos,ns,1.359105537,-0.0000275,0.0000189,-1.453162842,0.147190059,neg,ns,0.970568393,Ric8b,Ric8b_Exon,10,84970738,84970787,84970786,84970787,50,-,TATAGAGAGGGTCTAACTCCAGTTCTCAGCTTATTAACCGAATGTTCCCG,"Exon (Ric8b-201/Ric8b, exon 6 of 10)",10,84917616,85016447,98832,1,Ric8b-201,53122,Ric8b-201;Ric8b-203;Ric8b-202;Ric8b-205,Ric8b;Ric8b;Ric8b;Ric8b,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,11,14,237422,ENSMUSG00000035620,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2709,cg11128436,3.74E-08,0.000000809,0.04616464,0.96320875,gain,ns,-0.00000027,0.00000137,-0.196264591,0.844531671,neg,ns,-0.000507237,0.000402779,-1.259342723,0.208853947,neg,ns,0.680157313,0.0000105,0.0000139,0.759251154,0.448279266,pos,ns,0.013957287,Kat6b,Kat6b_fiveUTR,14,21500899,21500948,21500899,21500900,50,+,CGGATTCATGTCAACGACAACAACAGGGGGACACAAAATGGCGGCGGCTT,5' UTR,14,21481434,21517111,35678,1,Kat6b-209,19465,Kat6b-209;Kat6b-211;Kat6b-206;Kat6b-204;Kat6b-201;Kat6b-207;Kat6b-202;Kat6b-208;Kat6b-212;Kat6b-210,Kat6b;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,7,21,54169,ENSMUSG00000021767,conserved gene and region,14,21500899,21501345,447,*,447,45,0.727069351,0.780983072,0.100671141,1.37E-34,CpGisland,TRUE,U1,Pr-A
19836,cg19350036,-8.73E-08,0.00000585,-0.014908323,0.98811491,loss,ns,0.00000195,0.00000995,0.196259689,0.844535505,pos,ns,-0.000622537,0.002914064,-0.213632059,0.830974432,neg,ns,0.080412339,0.0000848,0.000100214,0.846080962,0.398160194,pos,ns,0.911153234,Med12,Med12_Exon,X,101293601,101293650,101293601,101293602,50,+,CGCCTTCGCCAACAGCTCCAGGCAAAGATAGTGAGAGGGGCAGTAGGGAG,"Exon (Med12-204/Med12, exon 39 of 46)",20,101274030,101297465,23436,1,Med12-204,19571,Med12-204;Med12-203;Med12-201;Med12-202;Med12-208;Med12-205;Med12-206,Med12;Med12;Med12;Med12;Med12;Med12;Med12,0;0;0;0;0;0;-2919,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,15,15,59024,ENSMUSG00000079487,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1307,cg23683971,0.0000268,0.000006,4.468523852,0.0000111,gain,ns,-0.000002,0.0000102,-0.196110782,0.84465195,neg,ns,0.000459575,0.002985721,0.15392427,0.877769602,pos,ns,0.056619463,0.00000635,0.000102679,0.061798849,0.950762844,pos,ns,0.057806381,Fezf2,Fezf2_Intergenic_downstream,14,12340373,12340422,12340421,12340422,50,-,AAAAAAACGAGGACGCTCTCCTTTCAGGAAATGGAATTCTAATGTACGCG,Distal Intergenic,14,12342094,12345844,3751,2,Fezf2-203,5471,Fezf2-203;Fezf2-201;Fezf2-202,Fezf2;Fezf2;Fezf2,0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,21,45,54713,ENSMUSG00000021743,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
25045,cg14113273,-0.0000145,0.00000804,-1.806556773,0.071801026,loss,ns,-0.00000268,0.0000137,-0.196048969,0.844700288,neg,ns,-0.010446552,0.004001482,-2.610670762,0.009475605,neg,ns,2.023393032,0.0000744,0.000137611,0.540986009,0.588905746,pos,ns,0.771474248,Fgfr2,Fgfr2_Intron,7,131793602,131793651,131793602,131793603,50,-,CGATTCTGGTAGCAGTTTGCAGTGATTGACGGGTCTCCAAAGAATCATTA,"Intron (Fgfr2-217/Fgfr2, intron 2 of 6)",7,130162451,133123350,2960900,2,Fgfr2-217,1329699,Fgfr2-217,Fgfr2,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,58,79,14183,ENSMUSG00000030849,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16933,cg27150827,0.000017,0.0000115,1.487088083,0.138007935,gain,ns,0.00000381,0.0000195,0.196037555,0.844709214,pos,ns,0.006630625,0.005699323,1.163405812,0.245559595,pos,ns,0.609843092,-0.000059,0.000195999,-0.301134586,0.76351375,neg,ns,0.387114416,Cbln1,Cbln1_Exon,8,87471726,87471775,87471774,87471775,50,-,TGGAAGTTAAAACTGTAGATCCCTTTGCGCGGGGCGATGAAAGTGCTGCG,Promoter (<=1kb),8,87468405,87472609,4205,2,Cbln1-201,834,Cbln1-201;Cbln1-203;Cbln1-202,Cbln1;Cbln1;Cbln1,0;-658;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,4,12404,ENSMUSG00000031654,conserved gene but different region,8,87471724,87471907,184,*,184,14,0.543478261,1.040808081,0.076086957,2.30E-09,CpGisland,TRUE,U13,Hc-P
21455,cg09840840,0.0000227,0.00000369,6.144635746,2.46E-09,gain,yes,-0.00000123,0.00000627,-0.196023231,0.844720416,neg,ns,0.004195384,0.001837809,2.282818184,0.023117894,pos,ns,1.636051739,-0.000169692,0.0000632,-2.684913419,0.007645192,neg,ns,0.057441646,Cacng4,Cacng4_Exon,11,107794326,107794375,107794374,107794375,50,+,TCAGGTTGGTGCCGTTGCAGATGTGCGCGCTGGAGTACAGCCAGTAGTCG,Promoter (<=1kb),11,107732357,107794557,62201,2,Cacng4-201,182,Cacng4-201,Cacng4,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,8,54377,ENSMUSG00000020723,conserved gene and region,11,107793647,107794919,1273,*,1273,155,0.743912019,0.885336743,0.121759623,7.27E-132,CpGisland,TRUE,U3,Pr-B
12219,cg03098138,-0.0000036,0.00000272,-1.325065222,0.186125348,loss,ns,0.000000905,0.00000462,0.195940272,0.844785293,pos,ns,-0.001389483,0.001353218,-1.026799279,0.30531551,neg,ns,0.515251133,0.000055,0.0000465,1.182516039,0.237907183,pos,ns,0.953248457,Iqch,Iqch_Intron,9,63523364,63523413,63523412,63523413,50,-,TCAACTTCTTAATTATTCTTGTTCACACAGCATTTCCTTTTGCTCAGGCG,"Intron (Gm16759-201/Gm16759-201, intron 3 of 4)",9,63421455,63602493,181039,2,Iqch-201,79080,Iqch-201;Iqch-203;Iqch-204;Iqch-202;Iqch-206,Iqch;Iqch;Iqch;Iqch;Iqch,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,22,78250,ENSMUSG00000037801,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3269,cg12685265,-0.00000242,0.00000123,-1.965846945,0.050208534,loss,ns,0.00000041,0.00000209,0.195932148,0.844791645,pos,ns,-0.000636916,0.000613407,-1.038325283,0.299927836,neg,ns,0.522983226,0.0000151,0.0000211,0.716476901,0.474236331,pos,ns,0.033616327,Kmt2e,Kmt2e_Intron,5,23435902,23435951,23435902,23435903,50,-,CGGCCCCAGGCTGATGTTGTGGTAATCTAATCAGCTCGGGTCCTCCACAC,"Intron (Kmt2e-207/Kmt2e, intron 1 of 12)",5,23434441,23486400,51960,1,Kmt2e-207,1461,Kmt2e-207;Kmt2e-201;Kmt2e-202,Kmt2e;Kmt2e;Kmt2e,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,8,69188,ENSMUSG00000029004,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
17316,cg06747919,-0.00000454,0.00000133,-3.402779266,0.000754627,loss,ns,0.000000444,0.00000227,0.195845066,0.844859747,pos,ns,-0.000513173,0.000664328,-0.772469429,0.440424971,neg,ns,0.356128065,0.00000151,0.0000228,0.06627304,0.947203167,pos,ns,0.972023499,Agap1,Agap1_Intron,1,89671663,89671712,89671663,89671664,50,+,CGGACATCTGAACACTGTTTCAGGCTGGTTTGTAACAACGAGGCAATTAG,"Intron (Agap1-201/Agap1, intron 9 of 17)",1,89454806,89897617,442812,1,Agap1-201,216857,Agap1-201;Agap1-204;Agap1-202,Agap1;Agap1;Agap1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,29,347722,ENSMUSG00000055013,conserved gene and region,1,89671548,89671746,199,*,199,12,0.537688442,0.840253343,0.060301508,0.000000554,CpGisland,TRUE,U10,Tr-S
21110,cg14334315,0.0000419,0.0000079,5.306058857,0.000000214,gain,yes,-0.00000263,0.0000134,-0.19573537,0.844945536,neg,ns,0.010867312,0.003932279,2.763616803,0.006058314,pos,ns,2.217648252,-0.000149478,0.000135231,-1.105352696,0.269863915,neg,ns,0.093963341,Ppfia2,Ppfia2_Promoter,10,106469415,106469464,106469415,106469416,50,+,CGTGTGCGTGAGGAGGAGAGCAAAGACGTGATTACTTCAGAATTTATTTA,Promoter (<=1kb),10,106470339,106932492,462154,1,Ppfia2-201,-875,Ppfia2-201;Ppfia2-202;Ppfia2-203,Ppfia2;Ppfia2;Ppfia2,0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,9,327814,ENSMUSG00000053825,conserved gene but different region,10,106469372,106469489,118,*,118,9,0.525423729,1.299877601,0.076271186,0.00000366,CpGisland,TRUE,U13,Hc-P
23958,cg03962396,-0.000000799,0.000000312,-2.556169257,0.011059751,loss,ns,-0.000000104,0.000000531,-0.195701847,0.844971754,neg,ns,0.000100637,0.000155499,0.647189643,0.517988156,pos,ns,0.285680171,-0.0000108,0.00000535,-2.022517892,0.043981206,neg,ns,0.008048448,Naa25,Naa25_fiveUTR,5,121397989,121398038,121398037,121398038,50,-,TTCTGCGCTTGTCATCATGGCGACGCGGGGCCATGTGCAGGACCCTAACG,Promoter (<=1kb),5,121397994,121438820,40827,1,Naa25-205,0,Naa25-201;Naa25-205;Naa25-202;Naa25-203,Naa25;Naa25;Naa25;Naa25,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,3,231713,ENSMUSG00000042719,conserved gene but different region,5,121397842,121398427,586,*,586,79,0.699658703,1.101818355,0.134812287,1.40E-71,CpGisland,TRUE,U1,Pr-A
6633,cg16597409,0.000000306,0.00000138,0.221353174,0.824963182,gain,ns,-0.00000046,0.00000235,-0.19564596,0.845015462,neg,ns,0.000767882,0.000689041,1.114420801,0.265961953,pos,ns,0.575180487,-0.00000255,0.0000237,-0.107439446,0.914509862,neg,ns,0.965794966,Dennd1a,Dennd1a_Intron,2,37852260,37852309,37852260,37852261,50,+,CGGACAGCTGGTAATGCATTTTGAAGTGTGTTAACAACACTGTATCAAAC,"Intron (Dennd1a-201/Dennd1a, intron 18 of 21)",2,37798991,38287375,488385,2,Dennd1a-201,435066,Dennd1a-201;Dennd1a-206;Dennd1a-207,Dennd1a;Dennd1a;Dennd1a,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,46,227801,ENSMUSG00000035392,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19552,cg15936060,0.00000097,0.00000349,0.277610988,0.781496041,gain,ns,-0.00000116,0.00000594,-0.195620546,0.845035337,neg,ns,-0.002249686,0.001739365,-1.29339547,0.196837255,neg,ns,0.7058927,0.000112598,0.0000598,1.882395048,0.060718845,pos,ns,0.904485753,Efcab11,Efcab11_Intron,12,99737438,99737487,99737486,99737487,50,+,CCATTATCTAGTTTCTCCTGCCTCCAGGCAGGGCCACATCATTGATTACG,"Intron (Efcab11-205/Efcab11, intron 5 of 5)",12,99693045,99883423,190379,2,Efcab11-205,145936,Efcab11-205;Efcab11-201;Efcab11-207;Efcab11-202,Efcab11;Efcab11;Efcab11;Efcab11,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,78767,ENSMUSG00000021176,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20234,cg09816441,0.000107057,0.0000103,10.37844302,7.44E-22,gain,yes,-0.00000343,0.0000175,-0.195483872,0.84514223,neg,ns,0.017703246,0.005134053,3.448200957,0.000642374,pos,ns,3.192212029,-0.000492766,0.00017656,-2.790930381,0.005581547,neg,ns,0.437418168,C1ql1,C1ql1_Intron,11,102963183,102963232,102963231,102963232,50,+,AGCCTTAATATCTTACTTTGCAAATATAGTTTATTCCTTCAATAAAGCCG,"Intron (2410004I01Rik-201/2410004I01Rik-201, intron 1 of 2)",11,102939264,102946688,7425,2,C1ql1-201,-16495,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,4,23829,ENSMUSG00000045532,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
9160,cg16761699,0.00000102,0.0000018,0.568900397,0.569835658,gain,ns,-0.000000596,0.00000305,-0.195362836,0.845236894,neg,ns,-0.000619875,0.000894368,-0.693087008,0.488773871,neg,ns,0.310892018,0.0000409,0.0000308,1.329092388,0.184794847,pos,ns,0.965488723,Socs4,Socs4_Exon,14,47289961,47290010,47290009,47290010,50,-,AAAATTCATATCAGTGAACTCATGTTAGATAAGTGTCCTTTCCCACCTCG,"Exon (Socs4-201/Socs4, exon 2 of 2)",14,47276931,47296102,19172,1,Socs4-201,13030,Socs4-201;Socs4-202,Socs4;Socs4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,67296,ENSMUSG00000048379,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11875,cg16554811,-0.0000122,0.00000361,-3.379962223,0.000817687,loss,ns,0.0000012,0.00000614,0.195334173,0.845259312,pos,ns,0.000440417,0.001798751,0.244845812,0.806737812,pos,ns,0.093267587,-0.000111732,0.0000619,-1.806240198,0.071850563,neg,ns,0.035756673,Tle3,Tle3_fiveUTR,9,61372357,61372406,61372405,61372406,50,+,TTACTTTTCAGTCCCTATTTGGAACTGCTCTCGCGGCAGTTCAGACCTCG,Promoter (<=1kb),9,61372366,61418497,46132,1,Tle3-218,0,Tle3-218;Tle3-204;Tle3-201;Tle3-215;Tle3-212;Tle3-208;Tle3-207;Tle3-217;Tle3-202;Tle3-206;Tle3-210;Tle3-205;Tle3-211;Tle3-209;Tle3-213,Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,30,21887,ENSMUSG00000032280,conserved gene and region,9,61372388,61373461,1074,*,1074,110,0.683426443,0.879489012,0.102420857,1.55E-84,CpGisland,TRUE,U6,En-Sp
15424,cg08621485,0.00000105,0.00000183,0.574831777,0.565822006,gain,ns,-0.000000608,0.00000312,-0.195308962,0.84527903,neg,ns,0.000457501,0.000912739,0.501239443,0.616558356,pos,ns,0.210025812,-0.0000351,0.0000314,-1.118677563,0.264143814,neg,ns,0.937107685,Tnrc6b,Tnrc6b_Exon,15,80879610,80879659,80879658,80879659,50,+,GGGAACACCTCCAGGAGCACTGATGCCCCTTCACAAAGCACTGGAGATCG,"Exon (Tnrc6b-201/Tnrc6b, exon 8 of 25)",15,80711313,80941085,229773,1,Tnrc6b-201,168297,Tnrc6b-201;Tnrc6b-204;Tnrc6b-207;Tnrc6b-208;Tnrc6b-206;Tnrc6b-209,Tnrc6b;Tnrc6b;Tnrc6b;Tnrc6b;Tnrc6b;Tnrc6b,0;0;0;0;-3014;-4691,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,20,24,213988,ENSMUSG00000047888,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2821,cg13563028,0.0000317,0.00000747,4.236503615,0.00003,gain,ns,0.00000248,0.0000127,0.195090846,0.845449629,pos,ns,0.013877902,0.003718941,3.731681272,0.000226202,pos,ns,3.645503668,-0.000279362,0.000127894,-2.184322546,0.029687477,neg,ns,0.479640153,Comtd1,Comtd1_Intergenic_upstream,14,21903892,21903941,21903892,21903893,50,-,CGGCGCAGGAATGTTTAATGTTCTCATTATTGGTTACGCTGTTGTGTATA,Distal Intergenic,14,21845855,21848977,3123,2,Comtd1-202,-54964,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,13,69156,ENSMUSG00000021773,mapped to different genes,14,21903863,21904078,216,*,216,12,0.532407407,0.786885246,0.055555556,0.00000131,CpGisland,TRUE,U9,En-Pp
19543,cg14191120,0.0000494,0.00000714,6.912372373,2.72E-11,gain,yes,0.00000237,0.0000121,0.195065555,0.845469411,pos,ns,0.008380319,0.003555261,2.357160088,0.019036753,pos,ns,1.720407132,-0.00032809,0.000122265,-2.68342771,0.007678453,neg,ns,0.140334364,Slco2b1,Slco2b1_Intergenic_downstream,7,99648711,99648760,99648711,99648712,50,-,CGGAGTTAATTATGTTCATCAGGAAGGGAGAAGAGAAAGGAACAAGGCGC,Distal Intergenic,7,99659857,99664932,5076,2,Slco2b1-206,16221,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,101488,ENSMUSG00000030737,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2236,cg06463042,-0.00000124,0.000000861,-1.443248765,0.149960128,loss,ns,-0.000000285,0.00000146,-0.194929035,0.845576194,neg,ns,0.000428703,0.000428512,1.000445523,0.317875217,pos,ns,0.49774333,-0.0000129,0.0000147,-0.876050313,0.381680992,neg,ns,0.977211574,Gm30341,Gm30341_Intergenic_upstream,3,18715162,18715211,18715210,18715211,50,-,ATTGCAGCCTTCACATGGTTTGGCTCTGCGATCTCATAAACAGTGTGACG,Distal Intergenic,3,18753077,18753365,289,1,Gm30341-201,-37915,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,17,23,102632201,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9425,cg20510807,0.0000189,0.00000534,3.535444258,0.000469198,gain,ns,-0.00000177,0.00000908,-0.194743521,0.845721305,neg,ns,0.008306859,0.002659576,3.123376445,0.001956732,pos,ns,2.708468657,-0.00024632,0.0000915,-2.693117356,0.007463851,neg,ns,0.866093851,Zbtb16,Zbtb16_Intron,9,48704285,48704334,48704333,48704334,50,+,ATGTTTAACAGACATGTTATCTAAGTGAGTCGGATTGAGATTCCATCCCG,"Intron (Zbtb16-201/Zbtb16, intron 4 of 6)",9,48654297,48835945,181649,2,Zbtb16-201,131611,Zbtb16-201;Zbtb16-202,Zbtb16;Zbtb16,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,37,235320,ENSMUSG00000066687,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18824,cg10852426,0.0000184,0.0000044,4.190092649,0.0000364,gain,ns,-0.00000146,0.00000748,-0.194703853,0.845752333,neg,ns,0.002263619,0.002191317,1.032994678,0.302411587,pos,ns,0.519401573,0.00000786,0.0000754,0.104328945,0.916975775,pos,ns,0.871209205,E130114P18Rik,E130114P18Rik_Intron,4,97581997,97582046,97582045,97582046,50,+,AATGGCAGGGAAAGCTTCCGACGGCTCCATCAAATGGCAGCTCTGCTACG,"Intron (E130114P18Rik-207/E130114P18Rik, intron 1 of 4)",4,97568133,97584596,16464,2,E130114P18Rik-207,2550,E130114P18Rik-207;E130114P18Rik-201;E130114P18Rik-203;E130114P18Rik-202;E130114P18Rik-206;E130114P18Rik-204;E130114P18Rik-209;E130114P18Rik-208,E130114P18Rik;E130114P18Rik;E130114P18Rik;E130114P18Rik;E130114P18Rik;E130114P18Rik;E130114P18Rik;E130114P18Rik,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,24,319865,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25414,cg22536132,0.00000196,0.00000279,0.703379526,0.482347191,gain,ns,-0.000000924,0.00000475,-0.194614397,0.845822309,neg,ns,0.000861351,0.001390363,0.619514942,0.53603223,pos,ns,0.270809096,0.00000506,0.0000478,0.105747328,0.915851222,pos,ns,0.937016225,Cux1,Cux1_Exon,5,136313175,136313224,136313175,136313176,50,-,CGCTGGTGAGAACTGGTGTGTACCATTAGTATTGGAAGCCTGCTCCCCCG,"Exon (Cux1-204/Cux1, exon 15 of 23)",5,136248135,136360018,111884,2,Cux1-205,46794,Cux1-205;Cux1-207;Cux1-211;Cux1-203;Cux1-213;Cux1-201;Cux1-204;Cux1-209;Cux1-212;Cux1-206;Cux1-208,Cux1;Cux1;Cux1;Cux1;Cux1;Cux1;Cux1;Cux1;Cux1;Cux1;Cux1,0;0;0;0;0;0;0;0;0;0;50071,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,21,13047,ENSMUSG00000029705,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3781,cg03807462,-0.000033,0.00000847,-3.893867046,0.000120854,loss,ns,0.0000028,0.0000144,0.194610128,0.845825648,pos,ns,-0.007306548,0.004215891,-1.733096963,0.084072844,neg,ns,1.075344259,0.0000663,0.000144984,0.457315354,0.647764718,pos,ns,0.776996058,Cacna1h,Cacna1h_Intron,17,25419137,25419186,25419185,25419186,50,+,GTAACAGGAAACCCCAGAGATTCATTAGCAACAGGTTCCCATGGCAACCG,"Intron (Cacna1h-205/Cacna1h, intron 2 of 34)",17,25374285,25433783,59499,2,Cacna1h-205,14597,Cacna1h-205;Cacna1h-202;Cacna1h-201;Cacna1h-208;Cacna1h-206,Cacna1h;Cacna1h;Cacna1h;Cacna1h;Cacna1h,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,58226,ENSMUSG00000024112,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9339,cg19526944,-4.05E-08,0.000000241,-0.1683996,0.866378739,loss,ns,-7.95E-08,0.000000409,-0.194571523,0.845855847,neg,ns,-0.000264977,0.000119761,-2.212551755,0.027657081,neg,ns,1.558193652,0.00000557,0.00000412,1.352838129,0.177093185,pos,ns,0.993831961,Tenm3,Tenm3_Exon,8,48228975,48229024,48229023,48229024,50,+,ACCTTGATGCAGTCCTCGTTGGCGATGTTGAGCACGTTGGTCTGCACGCG,"Exon (Tenm3-201/Tenm3, exon 29 of 29)",8,48227682,48674690,447009,2,Tenm3-201,445666,Tenm3-201;Tenm3-206,Tenm3;Tenm3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,39,23965,ENSMUSG00000031561,conserved gene and region,8,48228922,48229133,212,*,212,21,0.632075472,0.99197861,0.099056604,3.13E-16,CpGisland,TRUE,U10,Tr-S
18845,cg14548148,-0.0000382,0.00000744,-5.142575622,0.000000481,loss,yes,0.00000246,0.0000126,0.19455862,0.84586594,pos,ns,-0.004917541,0.003701253,-1.328615122,0.184952156,neg,ns,0.732940602,0.0000461,0.000127286,0.361977032,0.717615812,pos,ns,0.846358293,Mllt6,Mllt6_Exon,11,97667126,97667175,97667126,97667127,50,-,CGTCAAGTACTGCGGCTACTGCAAATACCACTTCAGCAAGATGGTGAGTC,"Exon (Mllt6-201/Mllt6, exon 6 of 20)",11,97663414,97685463,22050,1,Mllt6-201,3712,Mllt6-201;Mllt6-206;Mllt6-202;Mllt6-203,Mllt6;Mllt6;Mllt6;Mllt6,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,4,246198,ENSMUSG00000038437,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23377,cg27633952,-0.00000403,0.0000016,-2.512313036,0.012501864,loss,ns,-0.00000053,0.00000273,-0.194483223,0.84592492,neg,ns,-0.000494258,0.000798767,-0.618776924,0.53651774,neg,ns,0.270415913,-0.0000322,0.0000275,-1.172020833,0.242088625,neg,ns,0.940947392,Smg1,Smg1_threeUTR,7,118195958,118196007,118196006,118196007,50,+,ATTAGCAGCTGTCAACACAGCCTCAGAAAAAAACACCTGGTTTGCAGCCG,3' UTR,7,118131308,118243637,112330,2,Smg1-201,47630,Smg1-201;Smg1-204;Smg1-210;Smg1-209;Smg1-206;Smg1-203,Smg1;Smg1;Smg1;Smg1;Smg1;Smg1,0;0;-3667;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,7,9,233789,ENSMUSG00000030655,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13213,cg17997082,-0.00000131,0.0000059,-0.222484613,0.824083161,loss,ns,0.00000195,0.00001,0.194381186,0.84600474,pos,ns,0.001559566,0.002935402,0.53129553,0.595594469,pos,ns,0.225049344,0.0000793,0.000100948,0.785818941,0.432573783,pos,ns,0.434258896,Foxb1,Foxb1_Promoter,9,69768845,69768894,69768845,69768846,50,-,CGCGCTGTCTGGAGGCAATGTAGATTTTCTAAAGATCTAATGAATAAACA,Promoter (7-8kb),9,69757710,69760940,3231,2,Foxb1-201,-7954,NA,NA,NA,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,8,21,64290,ENSMUSG00000059246,conserved gene and region,9,69768754,69768846,93,*,93,9,0.537634409,1.374384237,0.096774194,0.000000492,CpGisland,TRUE,U13,Hc-P
5124,cg01136382,-0.00000311,0.0000013,-2.386276152,0.017619742,loss,ns,0.00000043,0.00000221,0.194368908,0.846014344,pos,ns,-0.000331501,0.000648029,-0.511553435,0.609327762,neg,ns,0.215149034,0.0000312,0.0000223,1.401568315,0.162044583,pos,ns,0.044391615,Pik3ca,Pik3ca_Promoter,3,32397126,32397175,32397126,32397127,50,-,CGTTGTTTGTTTACACGATGTGAGCGGAAAAAGAGACCAATAAAGTTTAT,Promoter (<=1kb),3,32397671,32466107,68437,1,Pik3ca-203,-545,Pik3ca-203,Pik3ca,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,4,18706,ENSMUSG00000027665,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
7412,cg04196926,-0.00000252,0.00000126,-1.994989528,0.046919177,loss,ns,-0.000000417,0.00000214,-0.194365396,0.846017092,neg,ns,0.000323355,0.000628366,0.514595712,0.607202242,pos,ns,0.216666634,-0.000032,0.0000216,-1.480883231,0.139653332,neg,ns,0.969379086,Tcerg1,Tcerg1_Exon,18,42574326,42574375,42574374,42574375,50,+,GTAATTCAGCTTCTGAGGCCCTTTCACTCCTTGGAGTCTTTGCTGAGGCG,"Exon (Gm27457-201/Gm27457-201, exon 1 of 1)",18,42511487,42575793,64307,1,Tcerg1-209,62839,Gpr151-201;Tcerg1-209;Tcerg1-201;Tcerg1-202;Tcerg1-207,Gpr151;Tcerg1;Tcerg1;Tcerg1;Tcerg1,5277;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,12,56070,ENSMUSG00000024498,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5696,cg11841820,-0.0000247,0.0000094,-2.633385398,0.008877738,loss,ns,0.0000031,0.000016,0.194016141,0.846290315,pos,ns,-0.00251875,0.004676774,-0.53856567,0.590573086,neg,ns,0.228726349,-0.000256624,0.000160834,-1.595582666,0.111600916,neg,ns,0.790167604,Kirrel3,Kirrel3_Intron,9,34584828,34584877,34584828,34584829,50,+,CGGCATATTATACTTTAAAGTTTGACTTTAAAAGATGCCTGGGCTTTGCT,"Intron (Kirrel3-202/Kirrel3, intron 2 of 16)",9,34486126,35035280,549155,1,Kirrel3-202,98702,Kirrel3-202;Kirrel3-206;Kirrel3-209;Kirrel3-201;Kirrel3-208;Kirrel3-205,Kirrel3;Kirrel3;Kirrel3;Kirrel3;Kirrel3;Kirrel3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,21,67703,ENSMUSG00000032036,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2209,cg08547583,-0.0000346,0.00000764,-4.530685346,0.0000084,loss,ns,-0.00000252,0.000013,-0.19400025,0.846302747,neg,ns,-0.013217959,0.003804693,-3.474119809,0.00058552,neg,ns,3.232457952,0.000528426,0.000130843,4.038625468,0.0000678,pos,ns,0.889241574,Vps41,Vps41_Intergenic_upstream,13,18613372,18613421,18613420,18613421,50,+,ACTCCATACCTGACCAATTACAGCTTGCATGGTCCCCGTGTCCTGCTGCG,Distal Intergenic,13,18717286,18748999,31714,1,Vps41-204,-103865,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,4,218035,ENSMUSG00000041236,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12558,cg00711678,-0.00000174,0.00000185,-0.942714709,0.346560933,loss,ns,0.00000061,0.00000314,0.193964021,0.84633109,pos,ns,-0.000324539,0.000920718,-0.352484863,0.724714191,neg,ns,0.139833234,0.00000208,0.0000317,0.065834066,0.94755237,pos,ns,0.954511618,Nedd4l,Nedd4l_Exon,18,65172991,65173040,65172991,65172992,50,-,CGTAGCCTCAGCTCGCCAACAGTAACTTTATCTGCCCCGCTGGAGGTGAG,"Exon (Nedd4l-215/Nedd4l, exon 15 of 31)",18,64887705,65213404,325700,1,Nedd4l-215,285286,Nedd4l-215;Nedd4l-221;Nedd4l-223;Nedd4l-218;Nedd4l-202;Nedd4l-228;Nedd4l-225;Nedd4l-229;Nedd4l-201;Nedd4l-233;Nedd4l-208;Nedd4l-211;Nedd4l-220;Nedd4l-204;Nedd4l-207;Nedd4l-217;Nedd4l-231,Nedd4l;Nedd4l;Nedd4l;Nedd4l;Nedd4l;Nedd4l;Nedd4l;Nedd4l;Nedd4l;Nedd4l;Nedd4l;Nedd4l;Nedd4l;Nedd4l;Nedd4l;Nedd4l;Nedd4l,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;-1027,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,4,83814,ENSMUSG00000024589,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17384,cg22534522,0.000009,0.0000032,2.810136236,0.005266956,gain,ns,-0.00000105,0.00000544,-0.193787557,0.846469147,neg,ns,0.001820921,0.001593615,1.142635109,0.254071836,pos,ns,0.595043474,0.0000312,0.0000548,0.56935579,0.56952702,pos,ns,0.946192553,Ubap2l,Ubap2l_Exon,3,90003239,90003288,90003287,90003288,50,-,ACCTACCTGGGTTTTGGAGTACACAGAACCCGAGATATCTGGCACGCCCG,"Exon (Ubap2l-215/Ubap2l, exon 25 of 27)",3,90000140,90052455,52316,2,Ubap2l-215,49167,Hax1-201;Hax1-205;Hax1-206;Hax1-209;Hax1-204;Hax1-207;Hax1-210;Hax1-211;Hax1-212;Ubap2l-215;Ubap2l-201;Ubap2l-202;Ubap2l-208;Ubap2l-217;Ubap2l-223;Ubap2l-203;Ubap2l-211;Ubap2l-204;Ubap2l-220,Hax1;Hax1;Hax1;Hax1;Hax1;Hax1;Hax1;Hax1;Hax1;Ubap2l;Ubap2l;Ubap2l;Ubap2l;Ubap2l;Ubap2l;Ubap2l;Ubap2l;Ubap2l;Ubap2l,-4542;-4573;-4562;-4553;-4619;-4850;-4559;-4459;-4877;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,15,74383,ENSMUSG00000042520,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16633,cg05136263,0.0000544,0.00000695,7.828106677,7.90E-14,gain,yes,-0.00000229,0.0000118,-0.193759932,0.84649076,neg,ns,0.007265152,0.003460399,2.099512743,0.036579925,pos,ns,1.436757194,-0.000150998,0.000119003,-1.268857533,0.205443781,neg,ns,0.098398743,Six2,Six2_Exon,17,85687674,85687723,85687722,85687723,50,-,GATGTAGTGTGCCTTGAGCCACAGCTGCTGCAGCTTGGCGTGGTTGTGCG,Promoter (<=1kb),17,85684277,85688274,3998,2,Six2-202,551,Six2-202;Six2-201,Six2;Six2,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,4,20472,ENSMUSG00000024134,conserved gene and region,17,85687133,85688729,1597,*,1597,179,0.686912962,0.951379829,0.11208516,7.54E-145,CpGisland,TRUE,U3,Pr-B
776,cg11644849,-0.00000571,0.00000173,-3.306628227,0.001055195,loss,ns,-0.000000568,0.00000293,-0.193709779,0.846529998,neg,ns,0.002303481,0.000859347,2.680502103,0.007744332,pos,ns,2.111016032,-0.0000965,0.0000296,-3.265843393,0.001213613,neg,ns,0.954501987,Usp7,Usp7_Exon,16,8712051,8712100,8712099,8712100,50,-,CTGTCTGGATAAAAGCGTGGCATCACCATAATCTTCCATGGCAGATTTCG,"Exon (Usp7-207/Usp7, exon 4 of 32)",16,8689595,8792308,102714,2,Usp7-207,80208,Usp7-207;Usp7-206;Usp7-208;Usp7-210,Usp7;Usp7;Usp7;Usp7,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,10,252870,ENSMUSG00000022710,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12813,cg05463929,0.000127713,0.0000151,8.453683915,1.12E-15,gain,yes,-0.00000497,0.0000257,-0.193456057,0.84672851,neg,ns,0.005583873,0.007519075,0.742627629,0.458269505,pos,ns,0.338879041,0.000274612,0.00025858,1.061997947,0.289063245,pos,ns,0.154114206,Tmem33,Tmem33_Intergenic_upstream,5,67228748,67228797,67228748,67228749,50,-,CGGCGCCACTCGATTCCGGGATAATTTTTAATATATATGCAATAAATGTT,Distal Intergenic,5,67260565,67291461,30897,1,Tmem33-201,-31817,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,22,22,67878,ENSMUSG00000037720,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
6162,cg24312350,0.00005,0.0000112,4.459228279,0.0000115,gain,ns,-0.00000369,0.0000191,-0.193445422,0.84673683,neg,ns,0.014131867,0.005584158,2.530706805,0.011877804,pos,ns,1.925263838,-0.00028421,0.000192039,-1.479963755,0.139898444,neg,ns,0.017818363,Nrg2,Nrg2_Exon,18,36196599,36196648,36196599,36196600,50,+,CGCGCTGCAGCCCCCCGCTCCGGAGCGGCCACTTGTCCAGCACCTTTACC,Promoter (<=1kb),18,36017652,36197380,179729,2,Nrg2-203,732,Nrg2-203;Nrg2-201,Nrg2;Nrg2,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,20,100042150,ENSMUSG00000060275,conserved gene and region,18,36196476,36196996,521,*,521,55,0.700575816,0.861804511,0.105566219,2.23E-43,CpGisland,TRUE,U3,Pr-B
16094,cg27091814,-0.000000196,0.0000026,-0.075176774,0.940122553,loss,ns,-0.000000855,0.00000442,-0.193380881,0.846787329,neg,ns,0.000920873,0.001295923,0.710592558,0.477871004,pos,ns,0.32068932,-0.0000741,0.0000446,-1.662629938,0.09739724,neg,ns,0.932809022,Acaca,Acaca_Intron,11,84384062,84384111,84384062,84384063,50,-,CGCAGTTCATGCTGACTCTAGCAGAAGCAGAGAGAGCTCCATTTATCTTA,"Intron (Acaca-202/Acaca, intron 52 of 55)",11,84173122,84401651,228530,1,Acaca-202,210940,Acaca-202;Acaca-201,Acaca;Acaca,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,28,28,107476,ENSMUSG00000020532,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7583,cg10757510,-0.0000122,0.00000443,-2.761862089,0.006090168,loss,ns,-0.00000145,0.00000752,-0.193352118,0.846809834,neg,ns,-0.002579289,0.002204335,-1.170098503,0.242860105,neg,ns,0.614643822,0.000151311,0.0000758,1.996001175,0.046808343,pos,ns,0.920408887,Pdss2,Pdss2_Intron,10,43332415,43332464,43332415,43332416,50,+,CGTCACTTGAGTTAGAGGCAGCTTTATGTGCTCATCACTAGGGATTCCCA,"Intron (Pdss2-204/Pdss2, intron 2 of 7)",10,43221486,43405395,183910,1,Pdss2-204,110929,Pdss2-204;Pdss2-201;Pdss2-203;Pdss2-202;Pdss2-206,Pdss2;Pdss2;Pdss2;Pdss2;Pdss2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,6,71365,ENSMUSG00000038240,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
213,cg15935759,0.000000183,0.000000499,0.36655664,0.714199814,gain,ns,-0.000000164,0.000000848,-0.193239064,0.846898292,neg,ns,-0.000573818,0.000248308,-2.310915223,0.021493456,neg,ns,1.667693751,0.0000138,0.00000854,1.615021763,0.107323271,pos,ns,0.992520293,Gm21992,Gm21992_Exon,19,4787761,4787810,4787809,4787810,50,+,CATAGGACCGGGCAGCACGGCAGCGCTTGTAGTAGGCATCGAGCGCTCCG,"Exon (Rbm4-206/Rbm4, exon 3 of 4)",19,4742913,4811612,68700,2,Gm21992-203,23802,Gm21992-203;Gm21992-206;Gm21992-204;Gm21992-201;Gm21992-205;Gm21992-202;Rbm4-206;Rbm4-203;Rbm4-207;Rbm4-201;Rbm4-204;Rbm4-202;Rbm4-205,Gm21992;Gm21992;Gm21992;Gm21992;Gm21992;Gm21992;Rbm4;Rbm4;Rbm4;Rbm4;Rbm4;Rbm4;Rbm4,0;0;0;0;0;0;0;0;0;0;0;0;6073,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,27,48,102902673,ENSMUSG00000096370,mapped to different genes,19,4787732,4787814,83,*,83,8,0.662650602,0.878306878,0.096385542,0.00000291,CpGisland,TRUE,U10,Tr-S
18761,cg04870569,-0.0000105,0.00000591,-1.77018283,0.077679532,loss,ns,-0.00000194,0.00001,-0.193199612,0.846929161,neg,ns,0.005340829,0.002940451,1.816329624,0.070285574,pos,ns,1.153133804,-0.000296388,0.000101122,-2.931002137,0.003629884,neg,ns,0.840010804,Gm5560,Gm5560_Intergenic_upstream,5,97209205,97209254,97209205,97209206,50,-,CGGAGACAGATCATTTCTGTACAGAAATTGAGGATGACCTTTACTGATAA,Distal Intergenic,5,97264828,97265719,892,1,Gm5560-201,-55623,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,9,433923,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7865,cg10004859,-0.0000536,0.0000105,-5.095888574,0.000000605,loss,yes,0.00000345,0.0000179,0.19311548,0.846994991,pos,ns,-0.004902414,0.005233959,-0.936654965,0.349665181,neg,ns,0.456347612,0.00000647,0.000179995,0.035964789,0.971333583,pos,ns,0.812148763,Hif1an,Hif1an_threeUTR,19,44573971,44574020,44574019,44574020,50,+,CCAGCTTCCCCTACAAATCAGAGCTCTAAATTACAAGGTTTTTACCAACG,3' UTR,19,44562850,44576274,13425,1,Hif1an-201,11121,Hif1an-201,Hif1an,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,31,319594,ENSMUSG00000036450,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15037,cg26232187,0.0000129,0.00000198,6.513749509,2.96E-10,gain,yes,-0.00000065,0.00000337,-0.193016254,0.847072633,neg,ns,0.002544783,0.000986192,2.580413488,0.010327971,pos,ns,1.98598497,-0.0000406,0.0000339,-1.198034354,0.231818792,neg,ns,0.045116579,Ntrk3,Ntrk3_Exon,7,78577699,78577748,78577699,78577700,50,-,CGGAGCCCACATAGTCCAGCCAGACGCTTCCCAGCAAGAAAATCCGCCAG,Promoter (<=1kb),7,78175959,78578408,402450,2,Ntrk3-201,660,Ntrk3-201;Ntrk3-206;Ntrk3-205;Ntrk3-202;Ntrk3-204;Ntrk3-210;Ntrk3-214;Ntrk3-212;Ntrk3-220;Ntrk3-218,Ntrk3;Ntrk3;Ntrk3;Ntrk3;Ntrk3;Ntrk3;Ntrk3;Ntrk3;Ntrk3;Ntrk3,0;0;0;0;0;0;0;0;950;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,15,18213,ENSMUSG00000059146,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24221,cg14980868,0.00000658,0.00000266,2.47423203,0.013887344,gain,ns,-0.000000872,0.00000452,-0.192867126,0.847189325,neg,ns,0.002260794,0.001324087,1.707436208,0.088742229,pos,ns,1.051869666,-0.0000958,0.0000455,-2.103971274,0.036186128,neg,ns,0.072000774,Gm12902,Gm12902_Intergenic_downstream,4,123991008,123991057,123991056,123991057,50,+,TCCATCTGCTGCTCTGACGCCTAGGAGCAGTTATTCCACAACTGTCTGCG,Distal Intergenic,4,123926234,123926555,322,1,Gm12902-201,64774,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,34,34,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2871,cg10964828,-0.00000372,0.00000634,-0.587256861,0.557458676,loss,ns,-0.00000208,0.0000108,-0.192861479,0.847193743,neg,ns,0.003932641,0.003153916,1.246907198,0.213372798,pos,ns,0.670860948,-0.000188042,0.000108463,-1.733698013,0.083965916,neg,ns,0.883720958,Ccdc178,Ccdc178_Intron,18,21996617,21996666,21996617,21996618,50,+,CGTAAATACAGAAAACATTAACTGGTCACTGAGGGGATCCAATTTACAAC,"Intron (Ccdc178-204/Ccdc178, intron 21 of 23)",18,21810893,22171442,360550,2,Ccdc178-204,174776,Ccdc178-204;Ccdc178-201;Ccdc178-202,Ccdc178;Ccdc178;Ccdc178,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,19,21,70950,ENSMUSG00000024306,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16880,cg27553275,-0.0000122,0.0000036,-3.386096219,0.000800268,loss,ns,-0.00000118,0.00000611,-0.192853935,0.847199647,neg,ns,-0.001270058,0.001791305,-0.709012985,0.478849283,neg,ns,0.319801159,-0.0000407,0.0000616,-0.659877779,0.509822221,neg,ns,0.054401771,Irf2bpl,Irf2bpl_Promoter,12,86894346,86894395,86894394,86894395,50,-,CAGTCTGCACTGGTGACACAGGACATGTGGAAAATTTTGAGAGCACTGCG,Promoter (9-10kb),12,86880701,86884798,4098,2,Irf2bpl-201,-9597,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,5,6,238330,ENSMUSG00000034168,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12110,cg05552134,-0.0000024,0.00000111,-2.163137733,0.03129463,loss,ns,0.000000364,0.00000189,0.192799447,0.847242284,pos,ns,0.0000133,0.00055252,0.024138355,0.980757779,pos,ns,0.008438238,-0.0000374,0.000019,-1.96691856,0.050084227,neg,ns,0.021714942,Pias1,Pias1_fiveUTR,9,62980833,62980882,62980833,62980834,50,+,CGAGCTGCGCTTTACCTTTAGTTCCGCACTGTCCGCCATCTTGCGTCTGT,Promoter (<=1kb),9,62878368,62980879,102512,2,Pias1-201,0,Pias1-201;Pias1-202;Pias1-205,Pias1;Pias1;Pias1,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,12,56469,ENSMUSG00000032405,conserved gene but different region,9,62980517,62981139,623,*,623,66,0.706260032,0.90840403,0.105939005,4.79E-52,CpGisland,TRUE,NA,NRS
633,cg00054831,-0.00000383,0.00000228,-1.675147094,0.094913747,loss,ns,0.000000748,0.00000388,0.192772065,0.847263711,pos,ns,0.001208098,0.001136535,1.062966035,0.288624685,pos,ns,0.539666529,-0.0000602,0.0000391,-1.541239274,0.12427869,neg,ns,0.925504135,Usp27x,Usp27x_Exon,X,7373667,7373716,7373667,7373668,50,+,CGGCATCATCACACTTGAACCACTGGTCCTTGTGGTGCCGGATGAAGCTG,"Exon (Usp27x-202/Usp27x, exon 1 of 2)",20,7371274,7375826,4553,2,Usp27x-202,2110,Usp27x-202;Usp27x-203;Usp27x-201,Usp27x;Usp27x;Usp27x,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,6,54651,ENSMUSG00000046269,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
347,cg17782924,-0.00000941,0.00000399,-2.36005054,0.018891738,loss,ns,0.00000131,0.00000678,0.192674587,0.84733999,pos,ns,-0.003579842,0.001985516,-1.802978062,0.072362654,neg,ns,1.140485514,0.000065,0.0000683,0.952324076,0.341674579,pos,ns,0.06443182,Zfhx4,Zfhx4_fiveUTR,3,5218838,5218887,5218838,5218839,50,-,CGTTTTACTTGGATGTGATCAGCTGTAAGTAAAATAAAAGCAAAACAAAA,Promoter (<=1kb),3,5218526,5413165,194640,1,Zfhx4-203,312,Zfhx4-203;Zfhx4-202;Zfhx4-201;Zfhx4-204,Zfhx4;Zfhx4;Zfhx4;Zfhx4,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,10,77,80892,ENSMUSG00000025255,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
11858,cg22519171,0.00000124,0.00000345,0.360779725,0.718509842,gain,ns,-0.00000113,0.00000586,-0.19258071,0.847413453,neg,ns,0.00319534,0.001715845,1.862253751,0.063513284,pos,ns,1.197135433,-0.000102766,0.000059,-1.741569121,0.082575811,neg,ns,0.798133451,Adamts14,Adamts14_Exon,10,61229721,61229770,61229769,61229770,50,-,TCCTGGCGCTGCTGGGAGTGTGCCCAGCGACACACCTGCTCCAGGCTGCG,"Exon (Adamts14-201/Adamts14, exon 6 of 22)",10,61197112,61273438,76327,2,Adamts14-201,43668,Adamts14-201;Adamts14-202,Adamts14;Adamts14,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,237360,ENSMUSG00000059901,conserved gene and region,10,61229600,61229785,186,*,186,13,0.629032258,0.709090909,0.069892473,2.81E-08,CpGisland,TRUE,NA,NRS
15268,cg11924467,-0.00000979,0.00000273,-3.588441424,0.000386493,loss,ns,0.000000892,0.00000463,0.19250634,0.847471651,pos,ns,-0.001019066,0.001357827,-0.750512344,0.453515461,neg,ns,0.343407903,0.0000251,0.0000467,0.538421858,0.590672224,pos,ns,0.935770017,Zfp710,Zfp710_Exon,7,80086014,80086063,80086014,80086015,50,+,CGGCACATGCTGATCCACACCAGCGTCCGGCCCTACCAGTGCCACATCTG,"Exon (Zfp710-202/Zfp710, exon 3 of 5)",7,80024814,80094173,69360,1,Zfp710-202,61200,Zfp710-202;Zfp710-203;Zfp710-201;Zfp710-204;Zfp710-205,Zfp710;Zfp710;Zfp710;Zfp710;Zfp710,0;0;0;0;58200,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,209225,ENSMUSG00000048897,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1445,cg05328327,-0.00000158,0.00000102,-1.554004779,0.121203564,loss,ns,0.000000333,0.00000173,0.192502407,0.847474729,pos,ns,0.001014977,0.000506971,2.002041151,0.046151212,pos,ns,1.335816885,-0.0000389,0.0000174,-2.233858061,0.026205369,neg,ns,0.02795815,Sod2,Sod2_Exon,17,13008291,13008340,13008291,13008292,50,+,CGCAGATCATGCAGCTGCACCACAGCAAGCACCACGCGGCCTACGTGAAC,"Exon (Sod2-205/Sod2, exon 3 of 3)",17,13006846,13008310,1465,1,Sod2-205,1445,Sod2-205;Sod2-201;Sod2-206;Sod2-204;Sod2-202;Sod2-207;Sod2-203,Sod2;Sod2;Sod2;Sod2;Sod2;Sod2;Sod2,0;0;0;0;0;0;-2000,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,20656,ENSMUSG00000006818,conserved gene but different region,17,13007718,13008557,840,*,840,89,0.671428571,0.941798942,0.105952381,5.75E-70,CpGisland,TRUE,U1,Pr-A
23619,cg18454251,0.000000484,0.00000056,0.863922688,0.388298311,gain,ns,0.000000183,0.000000952,0.192471299,0.847499073,pos,ns,0.00005,0.000278818,0.17938841,0.857749924,pos,ns,0.066639312,-0.00000954,0.00000959,-0.994499296,0.320755469,neg,ns,0.013775013,Dll4,Dll4_Intron,2,119327307,119327356,119327355,119327356,50,+,CAATTGCGTTTCCTGCGGGTTATTTTTGGCGTGGGAACGCGGGGAGTACG,"Intron (Dll4-201/Dll4, intron 3 of 10)",2,119325784,119335962,10179,1,Dll4-201,1523,Dll4-201;Dll4-202,Dll4;Dll4,0;-1182,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,20,54485,ENSMUSG00000027314,conserved gene but different region,2,119327100,119327430,331,*,331,31,0.637462236,0.947985957,0.093655589,5.80E-23,CpGisland,TRUE,U3,Pr-B
8342,cg03303633,-0.00000437,0.00000326,-1.339925802,0.181250804,loss,ns,0.00000107,0.00000555,0.192457789,0.847509645,pos,ns,0.002536189,0.001624721,1.560999683,0.119544085,pos,ns,0.922471909,-0.0000833,0.0000559,-1.490741807,0.13704609,neg,ns,0.927588486,Zeb2,Zeb2_Intron,2,45032333,45032382,45032333,45032334,50,+,CGACACGCGTCAAGTAAAAGAAAGGTTAAAATTAGAAAATTCAATTTATT,"Intron (Zeb2-212/Zeb2, intron 3 of 10)",2,44983632,45117395,133764,2,Zeb2-212,85013,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-218;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4566,cg17715428,-0.0000944,0.0000136,-6.951096673,2.15E-11,loss,yes,-0.00000444,0.0000231,-0.192415782,0.847542519,neg,ns,-0.012591185,0.006758578,-1.862993233,0.06340883,neg,ns,1.197850257,0.0000789,0.000232427,0.339303046,0.734611189,pos,ns,0.828336479,Eml6,Eml6_threeUTR,11,29809324,29809373,29809372,29809373,50,+,CTATCTTTTCTCCCTTTTTCCAGTCCCAAAATACAATACTGTGAAAATCG,3' UTR,11,29743048,30026033,282986,2,Eml6-201,216660,Eml6-201;Eml6-202,Eml6;Eml6,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,2,237711,ENSMUSG00000044072,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26736,cg13919588,-0.00000523,0.00000671,-0.779057105,0.436540372,loss,ns,-0.00000219,0.0000114,-0.192396942,0.847557263,neg,ns,-0.003682251,0.003339805,-1.102534773,0.271084451,neg,ns,0.566895392,0.000115555,0.000114856,1.006092775,0.3151556,pos,ns,0.576606864,Huwe1,Huwe1_Exon,X,151922859,151922908,151922859,151922860,50,-,CGCCGGGCTAACAAGAAAGCCAAGCAGACAGGCAGGCTAGGTATGGAACT,"Exon (Huwe1-201/Huwe1, exon 71 of 83)",20,151803327,151935417,132091,1,Huwe1-201,119532,Huwe1-201;Huwe1-202;Huwe1-209;Huwe1-205;Huwe1-213,Huwe1;Huwe1;Huwe1;Huwe1;Huwe1,0;0;1577;0;-1350,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,Exon,22,28,59026,ENSMUSG00000025261,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8455,cg06999458,0.0000891,0.000017,5.255431749,0.000000275,gain,yes,0.00000554,0.0000288,0.192199579,0.847711716,pos,ns,0.009537096,0.008440034,1.129983151,0.259356872,pos,ns,0.58610224,0.000101899,0.000290252,0.351071851,0.725772915,pos,ns,0.454951654,Zeb2,Zeb2_Intron,2,45158504,45158553,45158552,45158553,50,-,AGAGCCCTAGAGTGGAGCACTTAAAGGGTAATTTACATGTCAGTTTGTCG,"Intron (Gm28643-201/Gm28643-201, intron 1 of 1)",2,44983632,45117395,133764,2,Zeb2-212,-41158,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24655,cg25636704,0.0000994,0.0000141,7.073275114,1.01E-11,gain,yes,-0.00000459,0.0000239,-0.192121723,0.847772648,neg,ns,-0.010735515,0.006997094,-1.534281985,0.12598022,neg,ns,0.899697637,0.000351164,0.000240629,1.459354827,0.14548002,pos,ns,0.405812359,Stac3,Stac3_Exon,10,127507722,127507771,127507770,127507771,50,-,GTCTCATTACTTTGTGGCTCTCTATCGGTTCAAAGCCCTGGAGAAGGACG,"Exon (Stac3-202/Stac3, exon 9 of 12)",10,127501686,127508823,7138,1,Stac3-202,6036,Stac3-202;Stac3-203;Stac3-201;Stac3-204;Stac3-205,Stac3;Stac3;Stac3;Stac3;Stac3,0;6028;0;3231;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,Exon,1,4,237611,ENSMUSG00000040287,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
27536,cg09460860,0.0000022,0.00000409,0.537801264,0.591100128,gain,ns,0.00000133,0.00000694,0.191939954,0.847914906,pos,ns,-0.003769247,0.002033203,-1.853846783,0.064710858,neg,ns,1.189022839,0.000176503,0.0000699,2.524301886,0.012091887,pos,ns,0.901243477,Gm5265,Gm5265_Intergenic_downstream,1,169313340,169313389,169313340,169313341,50,-,CGGCAAATTCACTGACAGTTCAAATGCGACATTTTTAGAAGCCATCAGTA,Distal Intergenic,1,169453528,169453869,342,2,Gm5265-201,140529,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,13,13,383613,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19214,cg19478000,-0.00000255,0.00000153,-1.671078391,0.095715352,loss,ns,-0.000000497,0.00000259,-0.191730921,0.848078507,neg,ns,-0.000180805,0.00075909,-0.238187032,0.811893397,neg,ns,0.090500991,0.0000109,0.0000261,0.41722887,0.676799803,pos,ns,0.056673942,Msl1,Msl1_Exon,11,98796493,98796542,98796493,98796494,50,-,CGCCTGCCTCAAACAGATCCTTCTGCTGCAATTGGACCTCATCGAACAGC,Promoter (<=1kb),11,98795516,98807859,12344,1,Msl1-201,977,Msl1-201;Msl1-203;Msl1-204;Msl1-202;Msl1-205,Msl1;Msl1;Msl1;Msl1;Msl1,0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,11,13,74026,ENSMUSG00000052915,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
26105,cg04514736,0.000000311,0.000000897,0.347074915,0.728770536,gain,ns,0.000000292,0.00000152,0.191641676,0.848148358,pos,ns,0.000324776,0.000446677,0.727092659,0.467717913,pos,ns,0.330015997,-0.0000135,0.0000154,-0.880570208,0.379232646,neg,ns,0.983972798,Dcx,Dcx_Exon,X,143931094,143931143,143931094,143931095,50,-,CGTACACAATCCCCTTGAAGTAGCGGTCCCCATTGCGGTAGAAACGTACC,"Exon (Dcx-201/Dcx, exon 2 of 7)",20,143855842,143933311,77470,2,Dcx-201,2168,Dcx-201;Dcx-203;Dcx-202;Dcx-204;Dcx-206;Dcx-205,Dcx;Dcx;Dcx;Dcx;Dcx;Dcx,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,8,13193,ENSMUSG00000031285,conserved gene and region,X,143930980,143931139,160,*,160,10,0.49375,1.025641026,0.0625,0.00000493,CpGisland,TRUE,NA,NRS
1210,cg11831387,-0.0000228,0.0000108,-2.110298012,0.03563356,loss,ns,-0.00000351,0.0000183,-0.191621968,0.848163783,neg,ns,0.027104971,0.005367225,5.050090241,0.000000755,pos,ns,6.122035694,-0.000698476,0.000184578,-3.784166557,0.000185106,neg,ns,0.478508362,Bcor,Bcor_Intron,X,12062510,12062559,12062510,12062511,50,-,CGTTTCTTTTGACTGCGCTTCAGCCCATATCCTGCTGTTAAATGCTGGGT,"Intron (Bcor-202/Bcor, intron 1 of 14)",20,12036740,12080553,43814,2,Bcor-202,17994,Bcor-202;Bcor-203;Bcor-204;Bcor-206;Bcor-201;Bcor-207;Bcor-205,Bcor;Bcor;Bcor;Bcor;Bcor;Bcor;Bcor,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,56,74,71458,ENSMUSG00000040363,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13124,cg15193680,-0.0000297,0.0000132,-2.245117089,0.025465302,loss,ns,-0.00000431,0.0000225,-0.191597459,0.848182966,neg,ns,0.022425299,0.00658518,3.405419451,0.000747631,pos,ns,3.126312703,-0.00104148,0.000226464,-4.598882232,0.0000062,neg,ns,0.610794175,Tcf4,Tcf4_Intron,18,69535291,69535340,69535339,69535340,50,+,AACACTGGAAAAATGTTGTCTCTGAAGGTTGCCAAAGTGACAGAATCCCG,"Intron (Tcf4-259/Tcf4, intron 6 of 6)",18,69343356,69564082,220727,1,Tcf4-259,191935,Tcf4-259;Tcf4-201;Tcf4-207;Tcf4-210;Tcf4-240;Tcf4-254;Tcf4-246;Tcf4-206;Tcf4-202;Tcf4-257;Tcf4-232;Tcf4-248;Tcf4-231;Tcf4-205;Tcf4-253;Tcf4-233;Tcf4-238;Tcf4-245;Tcf4-249;Tcf4-219;Tcf4-235;Tcf4-227;Tcf4-250;Tcf4-229;Tcf4-260;Tcf4-226;Tcf4-216;Tcf4-256;Tcf4-230;Tcf4-221;Tcf4-234;Tcf4-258;Tcf4-217;Tcf4-247;Tcf4-252;Tcf4-218;Tcf4-208;Tcf4-243;Tcf4-237;Tcf4-239;Tcf4-262,Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,42,66,21413,ENSMUSG00000053477,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19644,cg01193706,0.0000301,0.0000119,2.534828793,0.011741821,gain,ns,-0.00000387,0.0000202,-0.191527453,0.84823776,neg,ns,0.011730174,0.005916186,1.982725856,0.0482805,pos,ns,1.316228242,-0.000361868,0.000203457,-1.778597962,0.076285643,neg,ns,0.875277235,Gm28267,Gm28267_Intergenic_upstream,9,100266924,100266973,100266972,100266973,50,-,GGCTTTACAGCTCCAAGACAGCTTGCACAGGCCCCGATAAATGCCTATCG,Distal Intergenic,9,100404495,100404759,265,1,Gm28267-201,-137571,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,29,29,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10906,cg15425194,0.0000312,0.00000392,7.960299524,3.27E-14,gain,yes,-0.00000127,0.00000665,-0.191426504,0.848316774,neg,ns,0.003863731,0.001949048,1.982367804,0.048320741,pos,ns,1.315866414,-0.000014,0.000067,-0.20897261,0.834606869,neg,ns,0.03322577,Nbea,Nbea_Exon,3,55787862,55787911,55787862,55787863,50,-,CGAATCTCTTGTACGATTACAAGTGGATTTGGGTTTCTATTCCCCAGGCC,"Exon (Nbea-207/Nbea, exon 1 of 2)",3,55625195,56183701,558507,2,Nbea-201,395790,Mab21l1-201;Nbea-201;Nbea-208;Nbea-207;Nbea-203,Mab21l1;Nbea;Nbea;Nbea;Nbea,5352;0;0;0;-4372,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,14,26422,ENSMUSG00000027799,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
2955,cg05555567,0.0000154,0.00000395,3.893588141,0.000120987,gain,ns,-0.00000128,0.00000671,-0.191413018,0.848327331,neg,ns,0.001568336,0.001966688,0.797450304,0.425799936,pos,ns,0.370794408,0.0000592,0.0000676,0.875239167,0.382121404,pos,ns,0.918882955,Lrmda,Lrmda_Intron,14,22155795,22155844,22155795,22155796,50,-,CGATTTCATTCATGTGATTTGTTATTGAATGACCTTTTGAGGATTTTACA,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,136083,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206,Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15738,cg26932230,0.0000622,0.00000694,8.952137881,3.28E-17,gain,yes,-0.00000226,0.0000118,-0.191343107,0.848382052,neg,ns,-0.010703842,0.003456157,-3.097036185,0.002133417,neg,ns,2.670924269,0.000462247,0.000118857,3.889100983,0.000123139,pos,ns,0.116308851,Htra2,Htra2_Exon,6,83053428,83053477,83053428,83053429,50,-,CGTGTTCTGCAGTGCAAAGGGACTTCCCATGGCAACAACAAACTCCCCTT,Promoter (<=1kb),6,83051266,83054442,3177,2,Htra2-202,965,Aup1-201;Aup1-215;Aup1-217;Aup1-210;Aup1-209;Aup1-206;Aup1-212;Aup1-214;Aup1-208;Aup1-203;Aup1-207;Aup1-216;Aup1-204;Aup1-211;Aup1-202;Aup1-205;Aup1-213;Dqx1-201;Dqx1-202;Htra2-202;Htra2-201;Htra2-203;Htra2-204;Htra2-209;Htra2-205;Htra2-206;Htra2-207;Htra2-208;Htra2-211;Htra2-210;Loxl3-201;Loxl3-202;Loxl3-204,Aup1;Aup1;Aup1;Aup1;Aup1;Aup1;Aup1;Aup1;Aup1;Aup1;Aup1;Aup1;Aup1;Aup1;Aup1;Aup1;Aup1;Dqx1;Dqx1;Htra2;Htra2;Htra2;Htra2;Htra2;Htra2;Htra2;Htra2;Htra2;Htra2;Htra2;Loxl3;Loxl3;Loxl3,-1044;-1169;-1237;-1252;-1254;-1254;-1259;-1261;-1271;-1278;-1914;-2237;-2933;-3035;-3371;-3376;-3744;-4367;-4620;0;0;0;0;0;0;0;0;0;0;0;0;0;3560,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,64704,ENSMUSG00000068329,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2456,cg17088750,-0.0000171,0.00000368,-4.655249473,0.0000048,loss,ns,0.0000012,0.00000625,0.191302951,0.848413484,pos,ns,0.001580595,0.001831921,0.862807577,0.388910266,pos,ns,0.410150593,-0.000139987,0.000063,-2.222026699,0.027003113,neg,ns,0.877033672,Clasrp,Clasrp_threeUTR,7,19584762,19584811,19584810,19584811,50,+,CGAGTTCCAAATTCTTACTGACTTTGGCAGCTCCTGTCTCTTTACCAGCG,3' UTR,7,19581035,19604486,23452,2,Clasrp-201,19675,Clasrp-201;Clasrp-210;Clasrp-211;Clasrp-212;Clasrp-202;Clasrp-208;Clasrp-207;Clasrp-209;Clasrp-205;Clasrp-206;Clasrp-203;Clasrp-213;Zfp296-201,Clasrp;Clasrp;Clasrp;Clasrp;Clasrp;Clasrp;Clasrp;Clasrp;Clasrp;Clasrp;Clasrp;Clasrp;Zfp296,0;-1776;0;-3080;0;0;0;0;0;0;1880;1047;7475,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,3,53609,ENSMUSG00000061028,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23961,cg00477261,0.0000156,0.0000126,1.237556978,0.216816906,gain,ns,0.00000409,0.0000214,0.191047466,0.848613466,pos,ns,0.007580431,0.006264575,1.21004718,0.227182664,pos,ns,0.643624812,0.0000589,0.000215438,0.27356358,0.784602198,pos,ns,0.404767132,Iqsec3,Iqsec3_Exon,6,121428524,121428573,121428524,121428525,50,+,CGGAGTCCTCCATGCCCCCACCGGCCTGGGTGCAGGAGCCATCACTGTGA,"Exon (Iqsec3-201/Iqsec3, exon 3 of 14)",6,121372933,121473623,100691,2,Iqsec3-202,45050,Iqsec3-202;Iqsec3-204;Iqsec3-201;Iqsec3-203,Iqsec3;Iqsec3;Iqsec3;Iqsec3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,3,243621,ENSMUSG00000040797,conserved gene and region,6,121428326,121428615,290,*,290,20,0.717241379,0.541246734,0.068965517,2.32E-12,CpGisland,TRUE,NA,NRS
6876,cg08657377,-0.0000279,0.00000991,-2.816003708,0.005174108,loss,ns,0.00000322,0.0000168,0.191041408,0.848618209,pos,ns,-0.009713167,0.004931238,-1.969721629,0.049760297,neg,ns,1.303117034,0.000158005,0.000169585,0.931717644,0.352207509,pos,ns,0.139845374,Kdm7a,Kdm7a_Intron,6,39205225,39205274,39205225,39205226,50,-,CGGAGGCTGTATTTAAATGTCCTGCTGTCAATCAAAAGACACTTCCTACA,"Intron (Kdm7a-201/Kdm7a, intron 1 of 19)",6,39136623,39206789,70167,2,Kdm7a-201,1515,Kdm7a-201,Kdm7a,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,8,338523,ENSMUSG00000042599,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
1863,cg11015411,0.0000252,0.00000933,2.703851414,0.00723244,gain,ns,0.00000303,0.0000158,0.190939581,0.848697918,pos,ns,0.021713322,0.004641675,4.677906505,0.00000433,pos,ns,5.363100833,-0.000781403,0.000159627,-4.895188077,0.00000158,neg,yes,0.365400479,Psat1,Psat1_Intergenic_downstream,19,15674778,15674827,15674826,15674827,50,+,ACCTAACTATCTCATTACCCCATCACACTGTGTGCAAACAGAACTGCCCG,Distal Intergenic,19,15905130,15909712,4583,2,Psat1-204,234885,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,14,17,107272,ENSMUSG00000024640,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1758,cg18881373,0.00000169,0.00000196,0.860787926,0.390020118,gain,ns,0.000000636,0.00000333,0.190849663,0.848768306,pos,ns,0.000824217,0.000976467,0.844081013,0.399275025,pos,ns,0.398727854,-0.0000112,0.0000336,-0.332291726,0.739893559,neg,ns,0.067856783,Kctd1,Kctd1_fiveUTR,18,15063609,15063658,15063657,15063658,50,+,ATTGGACCGCAGCGCTGAGAGCTTTTGTGTTTAATGACCTTCAGCTACCG,Promoter (<=1kb),18,14969400,15063618,94219,2,Kctd1-202,0,Kctd1-201;Kctd1-202;Kctd1-206;Kctd1-205,Kctd1;Kctd1;Kctd1;Kctd1,0;0;0;-1720,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,9,24,106931,ENSMUSG00000036225,conserved gene but different region,18,15063315,15063752,438,*,438,43,0.673515982,0.892352885,0.098173516,1.42E-32,CpGisland,TRUE,U3,Pr-B
1429,cg11230083,-0.0000529,0.0000169,-3.129127895,0.001919993,loss,ns,0.00000548,0.0000287,0.190744598,0.848850552,pos,ns,-0.007479499,0.00840984,-0.88937471,0.374491358,neg,ns,0.4265582,-0.0000103,0.000289214,-0.035641192,0.971591401,neg,ns,0.797321379,Atp11a,Atp11a_threeUTR,8,12828472,12828521,12828520,12828521,50,+,CCTGGCCTTCATGGTCCTCTTTAACTACATCATCCCTGTGTCCATGTACG,3' UTR,8,12757014,12868728,111715,1,Atp11a-201,71458,Atp11a-201;Atp11a-202;Atp11a-207;Atp11a-204,Atp11a;Atp11a;Atp11a;Atp11a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,50770,ENSMUSG00000031441,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
3118,cg07045585,-0.00000919,0.0000025,-3.671656354,0.000283713,loss,ns,0.000000811,0.00000425,0.190725374,0.848865601,pos,ns,-0.000465214,0.001245668,-0.373465418,0.709057344,neg,ns,0.149318641,0.0000431,0.0000428,1.005211294,0.315579091,pos,ns,0.948041371,Lrmda,Lrmda_Intron,14,22814533,22814582,22814581,22814582,50,-,AATGCCAGCTCATTATTTTCTGGCGTTCAGTAGTCCAAAAATAATGTCCG,"Intron (Lrmda-201/Lrmda, intron 5 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,794821,Lrmda-201;Lrmda-204;Lrmda-206,Lrmda;Lrmda;Lrmda,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22762,cg17230508,0.0000604,0.0000116,5.220171175,0.000000328,gain,yes,0.00000375,0.0000197,0.190617337,0.848950176,pos,ns,-0.013242678,0.0057604,-2.298916653,0.022174522,neg,ns,1.654145726,0.000567561,0.0001981,2.865026671,0.00445456,pos,ns,0.688057504,Dmbx1,Dmbx1_Intron,4,115931922,115931971,115931970,115931971,50,+,AAACAGAATCAATTATATATTTAAAAGGTGCCGCCCCGCAATTCCTGGCG,"Intron (Dmbx1-203/Dmbx1, intron 1 of 4)",4,115915119,115939926,24808,2,Dmbx1-203,7955,Dmbx1-203;Dmbx1-202,Dmbx1;Dmbx1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,42,140477,ENSMUSG00000028707,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
559,cg25430192,0.0000491,0.0000119,4.12261334,0.0000481,gain,ns,-0.00000385,0.0000202,-0.190523183,0.849023885,neg,ns,-0.005567085,0.005921783,-0.940102742,0.347896807,neg,ns,0.458549557,0.000385096,0.00020365,1.890973423,0.059560146,pos,ns,0.298450114,Dlx6,Dlx6_Intergenic_downstream,6,6871767,6871816,6871767,6871768,50,-,CGCATCTTTGCAAATTACAGATAATTGTAAACGTCCAGATTATGATAATA,Distal Intergenic,6,6863798,6865430,1633,1,Dlx6-204,8018,Dlx6-203;Dlx6-202;Dlx6-201,Dlx6;Dlx6;Dlx6,0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,36,13396,ENSMUSG00000029754,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
23631,cg15403104,-0.0000376,0.00000642,-5.858660249,1.19E-08,loss,yes,0.00000208,0.0000109,0.190502668,0.849039945,pos,ns,-0.005411934,0.003194444,-1.694170974,0.091237154,neg,ns,1.039828269,-0.0000126,0.000109857,-0.114744164,0.908722191,neg,ns,0.925481933,Dpyd,Dpyd_Intron,3,119362181,119362230,119362181,119362182,50,-,CGAACTTGGAATGAATTATTATACAACAAAGAGGCTGCTGTCATGCAGAA,"Intron (Dpyd-201/Dpyd, intron 20 of 22)",3,118562129,119432924,870796,1,Dpyd-201,800052,Dpyd-201,Dpyd,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,14,29,99586,ENSMUSG00000033308,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1745,cg03966402,0.00000672,0.0000038,1.767766806,0.078083553,gain,ns,-0.00000123,0.00000646,-0.190456771,0.849075877,neg,ns,0.007832897,0.001891231,4.141693034,0.0000445,pos,ns,4.351630008,-0.00034061,0.000065,-5.236990266,0.000000302,neg,yes,0.08982654,Gm49536,Gm49536_Intergenic_downstream,16,15053035,15053084,15053035,15053036,50,-,CGTGTGGGAGGTCAGGGCCCGGGAGTGCTGCTTCATGCCAAGTTTATAAA,Distal Intergenic,16,15000322,15000489,168,1,Gm49536-201,52762,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12496,cg00080164,-0.00000261,0.00000716,-0.364725754,0.715564813,loss,ns,0.00000232,0.0000122,0.190413526,0.849109731,pos,ns,0.002530081,0.00356343,0.710012736,0.478229978,pos,ns,0.320363203,-0.000243998,0.000122546,-1.991067839,0.047350929,neg,ns,0.567176129,Grid2,Grid2_Intron,6,64694917,64694966,64694917,64694918,50,-,CGTGCCCTGAAACACATCAAAAGAACCAAGTTCTACAAAAGAAAAAAGAA,"Intron (Grid2-207/Grid2, intron 1 of 1)",6,64663188,64704323,41136,1,Grid2-207,31729,Grid2-207,Grid2,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,10,14804,ENSMUSG00000071424,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27905,cg00001364,-0.00000964,0.00000405,-2.379043243,0.017962793,loss,ns,-0.00000131,0.00000688,-0.190361963,0.849150099,neg,ns,0.000266003,0.002016397,0.131919774,0.895133327,pos,ns,0.048112273,-0.0000477,0.0000693,-0.687494074,0.492285465,neg,ns,0.915730412,Prox1,Prox1_Exon,1,190161748,190161797,190161748,190161749,50,+,CGCGCTTTGCTCTCAGGTGCTCATCACATAAGCGATCCATATCAAACTGG,"Exon (Prox1-202/Prox1, exon 2 of 5)",1,190118035,190170714,52680,2,Prox1-202,8917,Prox1-202;Prox1-201;Prox1-203,Prox1;Prox1;Prox1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,19,59,19130,ENSMUSG00000010175,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20979,cg03798232,0.0000374,0.00000852,4.393182448,0.0000154,gain,ns,-0.00000275,0.0000145,-0.190244622,0.849241964,neg,ns,0.003161259,0.004238626,0.745821735,0.45634026,pos,ns,0.340711214,-0.0000858,0.000145766,-0.58835081,0.556725245,neg,ns,0.015969716,Spry2,Spry2_Promoter,14,105897334,105897383,105897382,105897383,50,-,ATCCGAGGCGGAACAGAGCAGTTGTTGTCCCAGAGGATATATCGCATCCG,Promoter (<=1kb),14,105891947,105896819,4873,2,Spry2-201,-564,Spry2-201,Spry2,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,8,12,24064,ENSMUSG00000022114,conserved gene and region,14,105896882,105897547,666,*,666,86,0.741741742,0.95483871,0.129129129,5.47E-76,CpGisland,TRUE,U1,Pr-A
23034,cg22638407,-0.00000588,0.00000594,-0.989917536,0.32298645,loss,ns,0.00000192,0.0000101,0.190219181,0.849261882,pos,ns,0.005374323,0.002956571,1.817755489,0.070066689,pos,ns,1.154488404,-0.00013707,0.000101676,-1.348100165,0.178610385,neg,ns,0.867678623,Hectd3,Hectd3_Exon,4,116996565,116996614,116996565,116996566,50,-,CGAGGACCTGATCCACTTCTTGTATGACCACCTGGGCAAGGAGGATGAGA,"Exon (Hectd3-201/Hectd3, exon 4 of 21)",4,116995317,117005277,9961,1,Hectd3-201,1248,Hectd3-201;Hectd3-203;Urod-201;Urod-205;Urod-209;Urod-206;Urod-204;Urod-202;Urod-203;Urod-210;Urod-207;Urod-208,Hectd3;Hectd3;Urod;Urod;Urod;Urod;Urod;Urod;Urod;Urod;Urod;Urod,0;-1923;-2152;-4900;-4679;-2201;-2208;-2219;-2220;-2968;-2225;-2185,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,76608,ENSMUSG00000046861,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17817,cg00508255,-0.0000349,0.0000108,-3.220935954,0.001413413,loss,ns,-0.0000035,0.0000184,-0.190139403,0.849324341,neg,ns,-0.011934041,0.005392486,-2.213086972,0.027619778,neg,ns,1.558779819,0.000245122,0.000185447,1.321790309,0.187212554,pos,ns,0.829519904,Ambra1,Ambra1_Intron,2,91859641,91859690,91859641,91859642,50,-,CGACAGATGAGGAAAGCTGCCAGTCAAACCCACGTTCAGCACATTTCCAT,"Intron (Ambra1-203/Ambra1, intron 12 of 18)",2,91730134,91918849,188716,1,Ambra1-203,129507,Ambra1-203;Ambra1-205;Ambra1-204;Ambra1-202;Ambra1-201,Ambra1;Ambra1;Ambra1;Ambra1;Ambra1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,12,228361,ENSMUSG00000040506,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
232,cg26279488,3.31E-09,0.000000191,0.017336521,0.986179303,gain,ns,-6.16E-08,0.000000324,-0.190080101,0.84937077,neg,ns,-0.000199914,0.000095,-2.104082403,0.03617636,neg,ns,1.441575138,0.00000408,0.00000327,1.247952569,0.21299022,pos,ns,0.995556489,Gm21992,Gm21992_threeUTR,19,4801764,4801813,4801764,4801765,50,-,CGGTAATCAGAGAGCTCGGCTAAACGCCGGTCGGAACCATACCTAGTCGA,3' UTR,19,4742913,4811612,68700,2,Gm21992-203,9799,Gm21992-203;Gm21992-206;Gm21992-204;Gm21992-201;Gm21992-205;Gm21992-202;Rbm14-201;Rbm14-202;Rbm14-203,Gm21992;Gm21992;Gm21992;Gm21992;Gm21992;Gm21992;Rbm14;Rbm14;Rbm14,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,21,48,102902673,ENSMUSG00000096370,mapped to different genes,19,4801605,4801812,208,*,208,24,0.586538462,1.371428571,0.115384615,3.42E-20,CpGisland,TRUE,U10,Tr-S
9351,cg23728998,-0.00000291,0.0000023,-1.263591796,0.207325994,loss,ns,-0.000000743,0.00000391,-0.190067328,0.84938077,neg,ns,0.000244976,0.00114509,0.213935948,0.830737649,pos,ns,0.080536107,-0.0000571,0.0000394,-1.450276142,0.147992538,neg,ns,0.947528703,Tenm3,Tenm3_Intron,8,48311559,48311608,48311607,48311608,50,-,AAGGACCACAATAAAACATTGATAGACTGAACAAAAACACGGTAGTGACG,"Intron (Tenm3-201/Tenm3, intron 12 of 28)",8,48227682,48674690,447009,2,Tenm3-201,363082,Tenm3-201;Tenm3-206,Tenm3;Tenm3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,39,23965,ENSMUSG00000031561,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16526,cg24499728,0.0000227,0.00000612,3.701420247,0.000253662,gain,ns,-0.00000198,0.0000104,-0.18998503,0.849445203,neg,ns,0.001634683,0.003048057,0.536303375,0.592133522,pos,ns,0.227580352,-0.000128101,0.000104822,-1.222077866,0.222606596,neg,ns,0.074302177,Btbd11,Btbd11_Exon,10,85387472,85387521,85387472,85387473,50,+,CGGGAGCTGCTGGCCGCCTCTAGCTGACTCCATGCACAGCCGGCACAACA,Promoter (<=1kb),10,85386814,85660292,273479,1,Btbd11-203,658,Btbd11-203;Btbd11-201,Btbd11;Btbd11,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,13,13,74007,ENSMUSG00000020042,conserved gene and region,10,85387046,85387614,569,*,569,49,0.65202109,0.810258646,0.086115993,4.08E-34,CpGisland,TRUE,U3,Pr-B
15018,cg10788097,0.00000153,0.00000417,0.367364732,0.71359764,gain,ns,-0.00000135,0.00000709,-0.189965852,0.849460219,neg,ns,0.00015727,0.002077178,0.075713202,0.93969611,pos,ns,0.027012571,-0.000101514,0.0000714,-1.421082496,0.156297897,neg,ns,0.927953591,Slc14a2,Slc14a2_Intron,18,78500063,78500112,78500111,78500112,50,-,TCAGCCTTGCCTGCACAATAGCACAAATTAAATTCTGCACTAACCAGACG,"Intron (Slc14a2-206/Slc14a2, intron 2 of 21)",18,78146148,78596942,450795,2,Slc14a2-206,96830,Slc14a2-206;Slc14a2-203,Slc14a2;Slc14a2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,12,27411,ENSMUSG00000024552,conserved gene and region,18,78500100,78500170,71,*,71,8,0.605633803,1.229437229,0.112676056,0.000000866,CpGisland,TRUE,U15,NS
20109,cg00740694,0.0000229,0.00000272,8.432088217,1.30E-15,gain,yes,-0.000000877,0.00000462,-0.1898571,0.849545366,neg,ns,0.003782682,0.001353763,2.794196971,0.005526866,pos,ns,2.257521076,-0.0000815,0.0000466,-1.751562156,0.080838024,neg,ns,0.072541125,Fzd2,Fzd2_Exon,11,102604824,102604873,102604824,102604825,50,+,CGGGGAGAAGGGCATCTCCATCCCGGACCACGGCTTCTGCCAGCCCATCT,Promoter (<=1kb),11,102604396,102608058,3663,1,Fzd2-201,428,Fzd2-201,Fzd2,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,57265,ENSMUSG00000050288,conserved gene and region,11,102604502,102604897,396,*,396,47,0.762626263,0.816853193,0.118686869,8.59E-40,CpGisland,TRUE,U3,Pr-B
25932,cg21610467,0.000042,0.00000715,5.876196372,1.08E-08,gain,yes,0.00000231,0.0000122,0.189817633,0.849576267,pos,ns,0.010208975,0.003560276,2.867466967,0.004421246,pos,ns,2.354455358,-0.000224115,0.000122438,-1.830446379,0.068143169,neg,ns,0.381208882,Drd4,Drd4_Exon,7,141293760,141293809,141293808,141293809,50,+,CATGGCCATGGACGTCATGCTGTGCACCGCCTCCATCTTCAACCTGTGCG,"Exon (Drd4-201/Drd4, exon 2 of 4)",7,141292006,141296464,4459,1,Drd4-201,1754,Deaf1-201;Deaf1-203;Deaf1-205;Deaf1-208;Drd4-201;Drd4-202,Deaf1;Deaf1;Deaf1;Deaf1;Drd4;Drd4,33863;19455;33684;17111;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,13491,ENSMUSG00000025496,conserved gene and region,7,141293704,141294246,543,*,543,51,0.679558011,0.825818572,0.093922652,1.73E-37,CpGisland,TRUE,U3,Pr-B
10531,cg19011483,-0.0000126,0.00000722,-1.743060561,0.082314534,loss,ns,0.00000233,0.0000123,0.189709708,0.849660769,pos,ns,-0.002223542,0.003595619,-0.618403032,0.536763793,neg,ns,0.270216787,-0.0000932,0.000123653,-0.753945841,0.451454024,neg,ns,0.737368139,Npas3,Npas3_Exon,12,54044685,54044734,54044685,54044686,50,+,CGAGTAAATATGGACCTCAATATCATTTACTGTGAAAATAGGTACTTTGT,"Exon (Npas3-204/Npas3, exon 7 of 11)",12,53248157,54069532,821376,1,Npas3-204,796528,Npas3-204;Npas3-201;Npas3-203,Npas3;Npas3;Npas3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,13,103,27386,ENSMUSG00000021010,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4064,cg14890920,-0.00000463,0.0000046,-1.007123333,0.314660963,loss,ns,-0.00000148,0.00000781,-0.189643656,0.849712486,neg,ns,-0.002992558,0.002288447,-1.307680774,0.191950552,neg,ns,0.716810635,0.000228245,0.0000787,2.900208404,0.003995682,pos,ns,0.814457142,Gm45647,Gm45647_Intergenic_upstream,8,26677886,26677935,26677886,26677887,50,-,CGCTGAAACCGCATGAATTTAATATGTGATGGGATCTGGAAGCTATTAGT,Distal Intergenic,8,26780315,26780509,195,1,Gm45647-201,-102429,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,46,62,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16296,cg21900509,-0.00000284,0.00000232,-1.220822644,0.223080919,loss,ns,0.000000748,0.00000395,0.1896351,0.849719186,pos,ns,0.000522438,0.001156183,0.451864164,0.651682832,pos,ns,0.18596372,-0.0000659,0.0000398,-1.656480579,0.098636295,neg,ns,0.950196214,Lrpprc,Lrpprc_Intron,17,84716841,84716890,84716841,84716842,50,-,CGACCTGGAGACAGCTTTTGTGTTATCCTGTCAATGGTTATAGAAGGATA,"Intron (Lrpprc-201/Lrpprc, intron 30 of 37)",17,84705247,84790558,85312,2,Lrpprc-201,73668,Lrpprc-201;Lrpprc-207,Lrpprc;Lrpprc,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,15,72416,ENSMUSG00000024120,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11202,cg17247426,0.000011,0.00000311,3.537907012,0.000465013,gain,ns,-0.000001,0.00000528,-0.189612019,0.849737258,neg,ns,0.002622163,0.001545615,1.696517523,0.090791736,pos,ns,1.041953682,-0.0000761,0.0000532,-1.431057212,0.153421111,neg,ns,0.035235698,Satb2,Satb2_fiveUTR,1,56971746,56971795,56971794,56971795,50,-,TTAGTTGCGTTGAGTCATCAGGCAAAGTGAGTCCTTTTGGGTTGTCCTCG,Promoter (<=1kb),1,56793981,56972502,178522,2,Satb2-201,707,Satb2-201;Satb2-202;Satb2-205;Satb2-203;Satb2-204,Satb2;Satb2;Satb2;Satb2;Satb2,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,9,33,212712,ENSMUSG00000038331,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
26542,cg04693958,-0.00000192,0.0000015,-1.28172181,0.200898051,loss,ns,-0.000000482,0.00000254,-0.189589263,0.849755076,neg,ns,-0.000232131,0.000745507,-0.31137319,0.755726221,neg,ns,0.121635509,0.0000181,0.0000256,0.707865742,0.479560494,pos,ns,0.054115496,Casz1,Casz1_fiveUTR,4,148901225,148901274,148901225,148901226,50,-,CGGGGAGTAATCAGTTGCAATTAGGCATTAATTAAGTATTATGAAAGTTG,5' UTR,4,148804429,148945129,140701,1,Casz1-201,96796,Casz1-201;Casz1-202;Casz1-206,Casz1;Casz1;Casz1,0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
4357,cg25889693,0.0000211,0.0000068,3.100080871,0.002112267,gain,ns,-0.00000219,0.0000115,-0.189529407,0.849801943,neg,ns,0.00551727,0.003382608,1.63106983,0.103891065,pos,ns,0.983421801,-0.000151782,0.000116328,-1.304782805,0.192934568,neg,ns,0.013217828,Wnt5a,Wnt5a_fiveUTR,14,28505713,28505762,28505761,28505762,50,+,GCCCACATTTGGGGTTGGAAAGCCCTAATTACCGCCGTCGCTGATGGACG,Promoter (<=1kb),14,28504750,28527448,22699,1,Wnt5a-201,963,Wnt5a-201;Wnt5a-204;Wnt5a-206,Wnt5a;Wnt5a;Wnt5a,0;-138;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,8,22418,ENSMUSG00000021994,conserved gene and region,14,28505712,28506138,427,*,427,53,0.683840749,1.093760572,0.12412178,5.59E-46,CpGisland,TRUE,U3,Pr-B
26512,cg03437435,0.0000404,0.00000943,4.281648073,0.0000248,gain,ns,0.00000303,0.000016,0.189399807,0.849903422,pos,ns,0.007345046,0.004693624,1.56489871,0.118626869,pos,ns,0.925816933,0.000178654,0.000161413,1.106812848,0.269232968,pos,ns,0.495422773,Casz1,Casz1_Intron,4,148860159,148860208,148860207,148860208,50,+,TAATTAACCCGTCGCCATGACAACTAATTTTGTGATGCCGTAAATTACCG,"Intron (Casz1-201/Casz1, intron 2 of 15)",4,148804429,148945129,140701,1,Casz1-201,55730,Casz1-201;Casz1-202,Casz1;Casz1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,94,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
3974,cg02870149,-0.00000806,0.000004,-2.015100655,0.044757029,loss,ns,0.00000129,0.0000068,0.189292799,0.849987213,pos,ns,0.0000753,0.001991021,0.037797493,0.969873471,pos,ns,0.01328492,0.00000833,0.0000685,0.121727161,0.903193969,pos,ns,0.955585753,Hook3,Hook3_Intron,8,26083777,26083826,26083825,26083826,50,+,TTAGTTAAGAAGCGGTGTTGCCACGTCAAGGCCCTTCCCCGCGAACACCG,"Intron (1700047A11Rik-202/1700047A11Rik-202, intron 1 of 4)",8,26021421,26119224,97804,2,Hook3-201,35398,Hook3-201;Hook3-208;Hook3-204,Hook3;Hook3;Hook3,0;-4400;8456,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,4,320191,ENSMUSG00000037234,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8437,cg15377518,0.0000445,0.00000413,10.76357816,3.64E-23,gain,yes,-0.00000133,0.00000702,-0.189291932,0.849987892,neg,ns,0.005966539,0.002057693,2.899625131,0.004002924,pos,ns,2.397622658,-0.000046,0.0000708,-0.649842971,0.516274901,neg,ns,0.089567911,Zeb2,Zeb2_Exon,2,45113406,45113455,45113406,45113407,50,+,CGGTGCACACCATTCACAGAACTGGAGAACTCCAAGGGGCGAAAGTTAAA,"Exon (Zeb2os-201/Zeb2os-201, exon 3 of 3)",2,44983632,45117395,133764,2,Zeb2-212,3940,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219;Zeb2-211;Zeb2-210;Zeb2-205;Zeb2-223;Zeb2-217;Zeb2-225;Zeb2-204;Zeb2-206;Zeb2-230,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;-3330;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,21,158,24136,ENSMUSG00000026872,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22270,cg03917138,-0.0000581,0.000013,-4.463026035,0.0000113,loss,ns,0.00000418,0.0000221,0.189232338,0.850034557,pos,ns,-0.01273346,0.006477257,-1.965872401,0.050205578,neg,ns,1.29924803,0.000424348,0.000222752,1.905023785,0.057702184,pos,ns,0.861748138,Sox9,Sox9_Exon,11,112785164,112785213,112785164,112785165,50,+,CGCACATCAAGACGGAGCAGCTGAGCCCCAGCCACTACAGCGAGCAGCAG,"Exon (Sox9-201/Sox9, exon 3 of 3)",11,112782224,112787760,5537,1,Sox9-201,2940,Sox9-201,Sox9,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,7,20682,ENSMUSG00000000567,mapped to different genes,11,112784687,112785225,539,*,539,42,0.667903525,0.727816358,0.077922078,1.77E-27,CpGisland,TRUE,U3,Pr-B
26874,cg01982830,-0.0000433,0.00000914,-4.73567256,0.00000333,loss,ns,-0.00000294,0.0000155,-0.189210731,0.850051476,neg,ns,-0.012154313,0.004549404,-2.671627585,0.007947293,neg,ns,2.099780783,0.00010698,0.000156454,0.68377783,0.494626253,pos,ns,0.651873776,Cacna1e,Cacna1e_Exon,1,154416093,154416142,154416093,154416094,50,-,CGAGGCCTAGCGGAGGTGACATGAGAGTCAGCATTTCATACATCTCAGTG,"Exon (Cacna1e-203/Cacna1e, exon 39 of 47)",1,154390731,154726356,335626,2,Cacna1e-203,310214,Cacna1e-203;Cacna1e-201;Cacna1e-207;Cacna1e-208,Cacna1e;Cacna1e;Cacna1e;Cacna1e,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,19,12290,ENSMUSG00000004110,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18180,cg05868882,-0.0000173,0.00000763,-2.26802542,0.024015435,loss,ns,-0.00000245,0.000013,-0.189188533,0.850068858,neg,ns,-0.006965819,0.003797227,-1.834448933,0.067545641,neg,ns,1.170402671,0.000335522,0.000130586,2.569348887,0.010656394,pos,ns,0.83312939,Cacna1g,Cacna1g_threeUTR,11,94408542,94408591,94408542,94408543,50,-,CGAGGTTAAAGGAAAAAATAAGTTACATTACAGTTTCCAAAATGGTTCTC,3' UTR,11,94408391,94474100,65710,2,Cacna1g-202,65509,Cacna1g-202;Cacna1g-203;Cacna1g-205;Cacna1g-206;Cacna1g-207;Cacna1g-208;Cacna1g-209;Cacna1g-210;Cacna1g-211;Cacna1g-201;Cacna1g-204;Cacna1g-213;Cacna1g-215,Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g,0;0;0;0;0;0;0;0;0;0;0;3088;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,18,12291,ENSMUSG00000020866,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11935,cg06203183,-0.000015,0.00000714,-2.104793281,0.036113923,loss,ns,-0.0000023,0.0000121,-0.189124964,0.850118637,neg,ns,-0.00591243,0.003556031,-1.662648704,0.097393478,neg,ns,1.011470126,0.000166232,0.000122292,1.359308829,0.175036739,pos,ns,0.701669115,Aifm2,Aifm2_Exon,10,61732387,61732436,61732435,61732436,50,+,AAGTGAAGGAGATCCTCCTCCGGAAGGGCGTGCAGCTGCTGCTGAGTACG,"Exon (Aifm2-204/Aifm2, exon 6 of 10)",10,61715263,61738653,23391,1,Aifm2-204,17124,Aifm2-204;Aifm2-206;Aifm2-201;Aifm2-203;Aifm2-202;Aifm2-207,Aifm2;Aifm2;Aifm2;Aifm2;Aifm2;Aifm2,0;17100;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,71361,ENSMUSG00000020085,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13159,cg03284649,-0.00000371,0.00000117,-3.163387088,0.001714025,loss,ns,0.000000377,0.00000199,0.189117639,0.850124373,pos,ns,0.000735304,0.000583784,1.259549811,0.208779289,pos,ns,0.680312585,-0.0000175,0.0000201,-0.87231241,0.383713091,neg,ns,0.039174488,Tcf4,Tcf4_fiveUTR,18,69593399,69593448,69593399,69593400,50,+,CGCTTGGCCCGGCCATATGGGAAAATGCAACTGAAGGAATTGTTGTGAAA,Promoter (<=1kb),18,69593413,69675730,82318,1,Tcf4-222,0,Tcf4-201;Tcf4-207;Tcf4-240;Tcf4-254;Tcf4-246;Tcf4-206;Tcf4-202;Tcf4-257;Tcf4-232;Tcf4-248;Tcf4-231;Tcf4-205;Tcf4-253;Tcf4-238;Tcf4-249;Tcf4-219;Tcf4-227;Tcf4-250;Tcf4-229;Tcf4-260;Tcf4-226;Tcf4-216;Tcf4-256;Tcf4-230;Tcf4-221;Tcf4-234;Tcf4-258;Tcf4-217;Tcf4-247;Tcf4-252;Tcf4-218;Tcf4-243;Tcf4-237;Tcf4-239;Tcf4-262;Tcf4-223;Tcf4-212;Tcf4-204;Tcf4-225;Tcf4-222;Tcf4-261;Tcf4-255;Tcf4-203;Tcf4-241;Tcf4-236;Tcf4-228;Tcf4-220;Tcf4-242,Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,12,66,21413,ENSMUSG00000053477,conserved gene and region,18,69593178,69593409,232,*,232,20,0.599137931,0.96305521,0.086206897,3.01E-14,CpGisland,TRUE,NA,NRS
11187,cg13385744,-0.00000151,0.00000238,-0.633095102,0.52713829,loss,ns,-0.000000766,0.00000405,-0.189081462,0.850152702,neg,ns,0.001088444,0.00118686,0.917078421,0.359814449,pos,ns,0.443921401,-0.0000543,0.0000408,-1.331013458,0.184162657,neg,ns,0.95923114,Satb2,Satb2_Exon,1,56897994,56898043,56898042,56898043,50,+,GAGCAGTTCCTTTAAGGCATTGCGGACTGTGGCATGGTTCCACTGCTCCG,"Exon (Satb2-201/Satb2, exon 4 of 10)",1,56793981,56972502,178522,2,Satb2-201,74459,Satb2-201;Satb2-202;Satb2-205,Satb2;Satb2;Satb2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,33,212712,ENSMUSG00000038331,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3070,cg10070910,-0.00000185,0.00000497,-0.37274742,0.709591162,loss,ns,-0.0000016,0.00000844,-0.189066751,0.850164221,neg,ns,0.001009789,0.002474075,0.408148308,0.683446555,pos,ns,0.165295441,-0.0000903,0.0000851,-1.061267816,0.289394306,neg,ns,0.907887867,Lrmda,Lrmda_Intron,14,22534894,22534943,22534894,22534895,50,+,CGCAGCAACTCAACATACAGCTGTCTGGCATTTTGACAGTACAATAACCC,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,515182,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206;Lrmda-202,Lrmda;Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8045,cg17264678,0.00000173,0.00000909,0.189944339,0.849477062,gain,ns,-0.00000292,0.0000154,-0.189045391,0.850180948,neg,ns,-0.001919771,0.004523326,-0.424415713,0.671557051,neg,ns,0.172917086,0.0000219,0.000155557,0.14108597,0.887893662,pos,ns,0.841690592,Phldb1,Phldb1_Exon,9,44701026,44701075,44701026,44701027,50,-,CGGCCATCAGCTCCTGGTACCACTGCTCTAAGTCTACAGCAGGGAGCAGC,"Exon (Phldb1-214/Phldb1, exon 12 of 22)",9,44686304,44728100,41797,2,Phldb1-214,27025,Phldb1-214;Phldb1-213;Phldb1-218;Phldb1-207;Phldb1-212;Phldb1-201;Phldb1-211;Phldb1-215;Phldb1-210;Phldb1-208;Phldb1-209;Phldb1-204;Phldb1-217;Phldb1-203,Phldb1;Phldb1;Phldb1;Phldb1;Phldb1;Phldb1;Phldb1;Phldb1;Phldb1;Phldb1;Phldb1;Phldb1;Phldb1;Phldb1,0;0;0;0;0;0;0;0;0;0;-4595;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,102693,ENSMUSG00000048537,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11531,cg10717922,0.0000412,0.000008,5.154152504,0.000000455,gain,yes,0.00000257,0.0000136,0.189023931,0.850197753,pos,ns,0.010700898,0.00398297,2.686662686,0.007606196,pos,ns,2.11883247,-0.00028553,0.000136974,-2.084552265,0.037928217,neg,ns,0.048376523,Med12l,Med12l_fiveUTR,3,59006991,59007040,59007039,59007040,50,+,CATGAGAGATCATGGCCGCCTTCGGGCTTCTCAGCTATGAGCAGAGACCG,5' UTR,3,59005825,59094888,89064,1,Med12l-203,1166,Med12l-203;Med12l-206;Med12l-201;Med12l-202;Med12l-204,Med12l;Med12l;Med12l;Med12l;Med12l,0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,9,329650,ENSMUSG00000056476,conserved gene but different region,3,59006944,59007530,587,*,587,59,0.63713799,0.990646453,0.100511073,3.98E-45,CpGisland,TRUE,U3,Pr-B
22578,cg12134769,0.000000285,0.00000296,0.09650009,0.923185758,gain,ns,0.000000949,0.00000502,0.188931561,0.850270087,pos,ns,0.000540793,0.001471354,0.367547612,0.713461386,pos,ns,0.146629527,-0.0000352,0.0000506,-0.695289765,0.487394575,neg,ns,0.942762786,Syn2,Syn2_Exon,6,115274241,115274290,115274241,115274242,50,+,CGGCCACCCCCTCAAGGTTGTTTACAGTATATTCTCGACTGTAATGGCAT,"Exon (Syn2-205/Syn2, exon 11 of 11)",6,115134902,115275091,140190,1,Syn2-205,139339,Syn2-205;Syn2-202;Syn2-201;Syn2-203;Syn2-206;Syn2-207,Syn2;Syn2;Syn2;Syn2;Syn2;Syn2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,3,20965,ENSMUSG00000009394,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21875,cg14649051,-0.0000203,0.0000132,-1.535131784,0.125771414,loss,ns,0.00000425,0.0000225,0.188915819,0.850282414,pos,ns,0.001664644,0.006584455,0.252814194,0.800579356,pos,ns,0.096595613,-0.000361986,0.000226439,-1.598605054,0.11092709,neg,ns,0.708232561,Pmfbp1,Pmfbp1_Intergenic_upstream,8,109436842,109436891,109436842,109436843,50,-,CGTCTGCTTTCTAATTTTCACAGTCAGGATAAAACAAATAGGTTGGAGTT,Distal Intergenic,8,109494027,109542640,48614,1,Pmfbp1-201,-57185,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,4,56523,ENSMUSG00000031727,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
509,cg12292083,-0.0000272,0.00000697,-3.902930353,0.00011662,loss,ns,-0.00000224,0.0000118,-0.188906343,0.850289835,neg,ns,-0.007527121,0.003469064,-2.169784096,0.030782524,neg,ns,1.511695777,-0.0000171,0.000119301,-0.143663818,0.885859286,neg,ns,0.811164122,Gm5873,Gm5873_Intergenic_downstream,6,6697762,6697811,6697810,6697811,50,-,CAGATGACAAATAACCCCTGAATGATAGCCAGGGTTCATCCAGCTGGTCG,Distal Intergenic,6,6735427,6736492,1066,2,Gm5873-201,38730,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,545826,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19568,cg19802184,0.0000131,0.00000431,3.045632172,0.002521244,gain,ns,-0.00000138,0.00000732,-0.188626545,0.85050895,neg,ns,-0.000272667,0.002143054,-0.127232735,0.898838686,neg,ns,0.046318244,0.000000806,0.0000737,0.010939967,0.99127838,pos,ns,0.088674375,Sox14,Sox14_Intergenic_downstream,9,99869316,99869365,99869316,99869317,50,+,CGACATATGTTTCCCGCAGATAAGTAAACAATCTGGACGTGAAATGGAAA,Distal Intergenic,9,99874220,99875655,1436,2,Sox14-202,6290,Sox14-201;Sox14-202,Sox14;Sox14,0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,12,18,20669,ENSMUSG00000053747,mapped to different genes,9,99869255,99869839,585,*,585,42,0.608547009,0.785385501,0.071794872,5.36E-26,CpGisland,TRUE,U3,Pr-B
11718,cg16425669,-0.0000064,0.00000203,-3.143335911,0.001831948,loss,ns,-0.000000652,0.00000346,-0.188558677,0.8505621,neg,ns,0.00308138,0.001012765,3.042541199,0.002546513,pos,ns,2.594054056,-0.0000724,0.0000348,-2.077728616,0.038557158,neg,ns,0.942176607,Nbeal1,Nbeal1_Exon,1,60206335,60206384,60206335,60206336,50,+,CGAATCCTTAGTACTGTGGAAAAGAGCAGACAGAAATATAAACCAGCTTC,"Exon (Nbeal1-203/Nbeal1, exon 7 of 55)",1,60180599,60338328,157730,1,Nbeal1-203,25736,Nbeal1-203,Nbeal1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,269198,ENSMUSG00000073664,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10895,cg05605723,-0.00000571,0.00000189,-3.025543926,0.002689676,loss,ns,0.000000604,0.0000032,0.188505127,0.850604038,pos,ns,0.000839463,0.00093852,0.894453649,0.371773138,pos,ns,0.429721992,-0.0000221,0.0000323,-0.683245368,0.494962129,neg,ns,0.949900195,Nbea,Nbea_Intron,3,55751522,55751571,55751522,55751523,50,+,CGTGCAGTAATTTGACTAATTATACCGGATTAGAGCATATTAATGCAAGC,"Intron (Nbea-201/Nbea, intron 41 of 57)",3,55625195,56183701,558507,2,Nbea-201,432130,Nbea-201;Nbea-208,Nbea;Nbea,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,14,26422,ENSMUSG00000027799,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9046,cg19534149,-0.00000814,0.00000721,-1.130042941,0.259331718,loss,ns,-0.00000231,0.0000122,-0.188397879,0.850688032,neg,ns,-0.005949231,0.003586092,-1.658973241,0.098132525,neg,ns,1.008187028,-0.000179605,0.000123325,-1.456353766,0.146306903,neg,ns,0.813841062,Nova1,Nova1_threeUTR,12,46698842,46698891,46698890,46698891,50,+,ACTGTCTGGTTGGTGACATAAAAATGCTCCACAAAACATGCAAATTACCG,3' UTR,12,46694517,46818929,124413,2,Nova1-201,120038,Nova1-201;Nova1-204,Nova1;Nova1,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,10,24,664883,ENSMUSG00000021047,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20973,cg01088303,-0.000011,0.00000536,-2.047650164,0.041436722,loss,ns,-0.00000171,0.0000091,-0.188395129,0.850690185,neg,ns,-0.001021036,0.002666434,-0.382922087,0.702039964,neg,ns,0.153638165,-0.0000647,0.0000917,-0.705317449,0.48114233,neg,ns,0.899474391,Zfp326,Zfp326_Exon,5,105888780,105888829,105888828,105888829,50,-,GGAAGCAGAAACTATGATGCTTTTGGAGGACCATCAACAGGCAGAGGCCG,"Exon (Zfp326-209/Zfp326, exon 5 of 12)",5,105876565,105914780,38216,1,Zfp326-209,12215,Zfp326-209;Zfp326-208;Zfp326-201;Zfp326-205;Zfp326-206;Zfp326-202;Zfp326-203;Zfp326-204,Zfp326;Zfp326;Zfp326;Zfp326;Zfp326;Zfp326;Zfp326;Zfp326,0;0;0;0;0;11839;0;-2115,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,11,54367,ENSMUSG00000029290,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25456,cg24855524,-0.000000894,0.00000198,-0.451994397,0.651589111,loss,ns,-0.000000633,0.00000336,-0.188374244,0.850706542,neg,ns,-0.0005092,0.000984584,-0.517172726,0.605404389,neg,ns,0.217954435,0.0000127,0.0000339,0.37474315,0.708107728,pos,ns,0.971784787,Gm9347,Gm9347_Intergenic_upstream,7,136738326,136738375,136738374,136738375,50,-,GTCAGCAGAACAGCAGGTTTATAAAAATCATCTCCTATGATTGTTAAACG,Distal Intergenic,7,136810909,136812515,1607,1,Gm9347-201,-72583,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,4,668771,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2130,cg21008602,0.0000297,0.00000394,7.536225696,5.36E-13,gain,yes,-0.00000126,0.00000669,-0.188355239,0.850721426,neg,ns,0.002461987,0.00196073,1.255648466,0.210189039,pos,ns,0.677389935,-0.0000573,0.0000674,-0.850179852,0.395881247,neg,ns,0.057319374,Bhlhe22,Bhlhe22_fiveUTR,3,18054366,18054415,18054414,18054415,50,-,TCTTCTTCATAATAACCTACTCAGAGATAATGATGTAAAAGACTCCCCCG,Promoter (<=1kb),3,18054174,18057517,3344,1,Bhlhe22-201,192,Bhlhe22-201,Bhlhe22,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,9,22,59058,ENSMUSG00000025128,conserved gene and region,3,18054414,18055574,1161,*,1161,142,0.711455642,0.972379014,0.122308355,3.49E-121,CpGisland,TRUE,U3,Pr-B
2853,cg11812236,0.000177264,0.0000176,10.05156276,9.26E-21,gain,yes,-0.00000563,0.00003,-0.18796354,0.851028208,neg,ns,0.033399378,0.00877734,3.80518228,0.000170718,pos,ns,3.767721503,-0.000746298,0.000301852,-2.472398223,0.013957374,neg,ns,0.357804637,Zfp503,Zfp503_Promoter,14,21991270,21991319,21991318,21991319,50,-,GGCTAATCAGTATTGAGGCCGGAGGGCAGGCGGGCCGCCTTTCACCGCCG,Promoter (1-2kb),14,21983959,21989601,5643,2,Zfp503-201,-1718,Zfp503-201,Zfp503,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,18,27,218820,ENSMUSG00000039081,mapped to different genes,14,21991208,21991513,306,*,306,17,0.513071895,0.84502924,0.055555556,3.96E-09,CpGisland,TRUE,NA,NRS
315,cg02657478,-0.00000443,0.00000292,-1.519377465,0.129686725,loss,ns,0.000000931,0.00000495,0.18792781,0.851056193,pos,ns,-0.001415504,0.001450946,-0.975573484,0.330036525,neg,ns,0.481437994,-0.0000271,0.0000499,-0.542438436,0.587906238,neg,ns,0.93790506,Cnih2,Cnih2_threeUTR,19,5093722,5093771,5093770,5093771,50,-,GGACTCCTTCTGGCAGTAGTTGAGAATGTCAGCATTCATGATGGAGACCG,3' UTR,19,5092868,5098521,5654,2,Cnih2-201,4750,Cnih2-201;Cnih2-202;Yif1a-205;Yif1a-206;Yif1a-201;Yif1a-202;Yif1a-204;Yif1a-203,Cnih2;Cnih2;Yif1a;Yif1a;Yif1a;Yif1a;Yif1a;Yif1a,0;0;5184;5177;5177;5167;5162;4794,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,4,12794,ENSMUSG00000024873,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24391,cg07165216,-0.00000242,0.00000336,-0.720202358,0.471943085,loss,ns,0.00000107,0.0000057,0.187842247,0.85112321,pos,ns,-0.00000764,0.001669973,-0.00457686,0.996351151,neg,ns,0.001587573,-0.00000115,0.0000574,-0.020034277,0.984028918,neg,ns,0.921773984,Chd4,Chd4_Exon,6,125120355,125120404,125120403,125120404,50,+,AACTACAATGATGGCTCCCAGGAGGACCGAGGTGTGTGTGGCCGGCCCCG,"Exon (Chd4-203/Chd4, exon 26 of 39)",6,125095981,125130585,34605,1,Chd4-203,24374,Chd4-203;Chd4-201;Chd4-202;Chd4-204;Chd4-205,Chd4;Chd4;Chd4;Chd4;Chd4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,15,107932,ENSMUSG00000063870,conserved gene but different region,6,125120280,125120502,223,*,223,12,0.596412556,0.612918003,0.053811659,0.00000182,CpGisland,TRUE,U10,Tr-S
12867,cg24805170,-0.0000154,0.0000137,-1.129279178,0.25965317,loss,ns,0.00000436,0.0000232,0.187780807,0.851171334,pos,ns,0.00660315,0.006803429,0.970562076,0.332523048,pos,ns,0.478178247,-0.000368521,0.000233969,-1.575081729,0.116257534,neg,ns,0.699809394,Lrrc28,Lrrc28_Exon,7,67560016,67560065,67560016,67560017,50,+,CGATTGGTAGAAATGTCTAGTGTCTGCAGCTCCTTCAAATCGCCAACCTC,"Exon (Lrrc28-202/Lrrc28, exon 6 of 10)",7,67513410,67645231,131822,2,Lrrc28-202,85166,Lrrc28-202;Lrrc28-204;Lrrc28-207;Lrrc28-210;Lrrc28-209;Lrrc28-211;Lrrc28-205;Lrrc28-208,Lrrc28;Lrrc28;Lrrc28;Lrrc28;Lrrc28;Lrrc28;Lrrc28;Lrrc28,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,2,67867,ENSMUSG00000030556,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1890,cg12501356,-0.0000265,0.0000088,-3.017206897,0.002762565,loss,ns,0.0000028,0.0000149,0.187657537,0.851267888,pos,ns,-0.007631736,0.004378382,-1.743049246,0.082316514,neg,ns,1.08451303,0.000119111,0.000150572,0.791057536,0.429515213,pos,ns,0.818602247,Fat3,Fat3_Intron,9,16029297,16029346,16029345,16029346,50,-,GTTGAACAGTTCTGCCCACAAGCTGTCTGTAGAATATAGAACATCTCTCG,"Intron (Fat3-205/Fat3, intron 6 of 25)",9,15910189,16501285,591097,2,Fat3-205,471939,Fat3-205;Fat3-201,Fat3;Fat3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,4,270120,ENSMUSG00000074505,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8291,cg08049977,-0.00000156,0.00000446,-0.350104687,0.726497884,loss,ns,0.00000142,0.00000758,0.187644171,0.851278358,pos,ns,0.000711792,0.002220973,0.320486532,0.74881546,pos,ns,0.125625198,0.00000602,0.0000764,0.078867322,0.937189039,pos,ns,0.91521728,Ebf1,Ebf1_Intron,11,44963698,44963747,44963698,44963699,50,-,CGTGCTCAGAAAATCCAAGCATGATTGAAAACAAGATGTGTTAAATCAAT,"Intron (Ebf1-203/Ebf1, intron 10 of 15)",11,44617317,45004995,387679,1,Ebf1-203,346381,Ebf1-203;Ebf1-202;Ebf1-201;Ebf1-206,Ebf1;Ebf1;Ebf1;Ebf1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,80,13591,ENSMUSG00000057098,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19947,cg09201044,-0.00000173,0.00000502,-0.344417716,0.730765694,loss,ns,0.0000016,0.00000852,0.187637459,0.851283615,pos,ns,-0.001937184,0.002497459,-0.775661791,0.438540028,neg,ns,0.35799076,-0.0000642,0.0000859,-0.747769012,0.455166357,neg,ns,0.910050772,Gm47932,Gm47932_Intergenic_downstream,9,101733879,101733928,101733879,101733880,50,-,CGCTCTGACAAGCCATGAATCAAAACCAGGTGAAATTGCTCTGGGGTCTC,Distal Intergenic,9,101754915,101757705,2791,2,Gm47932-201,23826,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26499,cg08005367,0.000000849,0.00000113,0.754248102,0.451272805,gain,ns,-0.000000359,0.00000191,-0.187574082,0.851333257,neg,ns,0.000506606,0.000560409,0.903993264,0.366700926,pos,ns,0.435687993,-0.0000285,0.0000193,-1.47837154,0.140323679,neg,ns,0.968424692,Adgrl2,Adgrl2_Exon,3,148820389,148820438,148820389,148820390,50,-,CGTTAAAAATCATGCTGAAAAAATTTACATTTGATAGGCAAAGTTAAGTT,"Exon (Adgrl2-219/Adgrl2, exon 5 of 7)",3,148815583,148828548,12966,2,Adgrl2-210,8110,Adgrl2-210;Adgrl2-202;Adgrl2-218;Adgrl2-203;Adgrl2-208;Adgrl2-205;Adgrl2-217;Adgrl2-220;Adgrl2-215;Adgrl2-204;Adgrl2-212;Adgrl2-213;Adgrl2-214;Adgrl2-206;Adgrl2-209;Adgrl2-219;Adgrl2-216,Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,10,99633,ENSMUSG00000028184,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4383,cg22199683,0.00000664,0.00000485,1.368756216,0.172066507,gain,ns,0.00000154,0.00000824,0.187415413,0.851457544,pos,ns,0.005562174,0.002415041,2.303138885,0.021932738,pos,ns,1.65890715,-0.000254853,0.0000831,-3.068557041,0.002340904,neg,ns,0.921858534,Tnik,Tnik_threeUTR,3,28667865,28667914,28667913,28667914,50,+,GCAGTTGAACTAACTTCTTTTTAATTTCAAACAGGTATTTTTTGCATCCG,3' UTR,3,28263214,28670585,407372,1,Tnik-207,404651,Tnik-207;Tnik-201;Tnik-212;Tnik-203;Tnik-205;Tnik-202;Tnik-206;Tnik-211;Tnik-214;Tnik-215;Tnik-204;Tnik-216,Tnik;Tnik;Tnik;Tnik;Tnik;Tnik;Tnik;Tnik;Tnik;Tnik;Tnik;Tnik,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,8,15,665113,ENSMUSG00000027692,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13738,cg16825439,-0.0000151,0.00000281,-5.388702001,0.000000141,loss,yes,0.000000893,0.00000477,0.187392212,0.851475718,pos,ns,-0.002546858,0.001396253,-1.824066766,0.069104583,neg,ns,1.160493149,-0.0000203,0.000048,-0.42333754,0.672342556,neg,ns,0.950787751,Gm4052,Gm4052_Intergenic_upstream,13,72303011,72303060,72303059,72303060,50,-,TAAGTCTGTATCCAACACTGTACTGAGATGTCTACCGCTAATGACCAACG,Distal Intergenic,13,72350221,72350671,451,1,Gm4052-201,-47210,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,16,16,100042828,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8409,cg14587384,-0.0000249,0.0000119,-2.093607938,0.037107105,loss,ns,-0.00000378,0.0000202,-0.187375558,0.851488763,neg,ns,-0.010833939,0.005912175,-1.832479313,0.067839136,neg,ns,1.168519694,0.000121281,0.000203319,0.596503126,0.551274506,pos,ns,0.567389924,Zeb2,Zeb2_Intron,2,45100889,45100938,45100889,45100890,50,+,CGCTGTCAAATCACCAGGAGGCTGTGACAAAGGGAGCTTGCAGCCTGACA,"Intron (Zeb2-212/Zeb2, intron 3 of 10)",2,44983632,45117395,133764,2,Zeb2-212,16457,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219;Zeb2-211;Zeb2-210;Zeb2-205;Zeb2-223;Zeb2-217,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;9138,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27574,cg08463914,-0.0000481,0.0000213,-2.264382544,0.02424107,loss,ns,-0.00000676,0.0000361,-0.187286749,0.85155833,neg,ns,0.009308497,0.01058175,0.879674628,0.379716993,pos,ns,0.420539967,-0.000526077,0.000363905,-1.445640803,0.149288145,neg,ns,0.71540379,Tshz2,Tshz2_Intron,2,169999148,169999197,169999196,169999197,50,+,TGCAGGTTGTCAAGGGCGACACTTCTGATTTAGTATAAACGAATGCCCCG,"Intron (Tshz2-203/Tshz2, intron 1 of 1)",2,169884893,170071816,186924,1,Tshz2-203,114255,Tshz2-203;Tshz2-205,Tshz2;Tshz2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,21,30,228911,ENSMUSG00000047907,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21639,cg13273551,-0.000000239,0.00000146,-0.163932867,0.869890821,loss,ns,0.000000463,0.00000247,0.187262656,0.851577203,pos,ns,0.000510461,0.000724632,0.704441174,0.481686931,pos,ns,0.317235137,-0.0000148,0.0000249,-0.595668693,0.551831205,neg,ns,0.043420413,Zfhx3,Zfhx3_fiveUTR,8,108703729,108703778,108703777,108703778,50,-,ATCCAAAGACTTTTTTTTCTTTTCACTCATCAGCTCCCACTTCCAGCGCG,5' UTR,8,107942644,108961630,1018987,1,Zfhx3-204,761085,Zfhx3-204;Zfhx3-202,Zfhx3;Zfhx3,0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,11,177,11906,ENSMUSG00000038872,conserved gene and region,8,108703775,108704236,462,*,462,77,0.798701299,1.122633173,0.166666667,1.84E-78,CpGisland,TRUE,U2,Pr-W
13423,cg04895159,-0.00000212,0.00000175,-1.206633684,0.228493232,loss,ns,-0.000000558,0.00000298,-0.187234561,0.851599211,neg,ns,0.000301986,0.000872445,0.346138096,0.729473737,pos,ns,0.136990339,-0.00000431,0.00003,-0.143611381,0.885900661,neg,ns,0.0470675,Sp5,Sp5_Promoter,2,70472355,70472404,70472355,70472356,50,+,CGCGGGGCTTTGTGTAATGGAACTGACATTTGGCCTTGATACCTGTATCT,Promoter (2-3kb),2,70474923,70477729,2807,1,Sp5-201,-2519,Sp5-201,Sp5,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,4,11,64406,ENSMUSG00000075304,mapped to different genes,2,70472181,70472373,193,*,193,20,0.668393782,0.970336853,0.103626943,6.92E-16,CpGisland,TRUE,U3,Pr-B
556,cg09388140,0.00000746,0.00000738,1.0098819,0.313339461,gain,ns,0.00000235,0.0000125,0.187209648,0.851618727,pos,ns,-0.005206751,0.003674288,-1.41707743,0.15746449,neg,ns,0.802817368,0.000137482,0.000126358,1.088028589,0.277427658,pos,ns,0.115163855,Dlx6,Dlx6_Exon,6,6869601,6869650,6869649,6869650,50,-,ATAATTAGAGTAATTTTTCATGTAGCCCGCTGATTACAGCGTTTTTACCG,"Exon (Dlx6os1-201/Dlx6os1-201, exon 2 of 3)",6,6863798,6865430,1633,1,Dlx6-204,5852,Dlx6-203;Dlx6-202;Dlx6-201;Dlx6-204,Dlx6;Dlx6;Dlx6;Dlx6,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,36,13396,ENSMUSG00000029754,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
18605,cg00545236,0.0000258,0.00000697,3.710753233,0.000244875,gain,ns,-0.00000221,0.0000118,-0.187103388,0.851701966,neg,ns,0.004572294,0.003466633,1.318943683,0.188161399,pos,ns,0.725469467,-0.000157099,0.000119217,-1.317751859,0.188559718,neg,ns,0.394503668,Hoxb5,Hoxb5_Intergenic_downstream,11,96306995,96307044,96306995,96306996,50,+,CGAGAAAGTCACGTGAGGTCCATAAAGTTAGTTTTATGGTTTTGGGGAGT,Distal Intergenic,11,96303512,96306120,2609,1,Hoxb5-201,3483,Hoxb5-202;Hoxb5-201,Hoxb5;Hoxb5,0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,34,15413,ENSMUSG00000038700,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
18495,cg03972619,0.0000116,0.00000675,1.725909548,0.085360103,gain,ns,0.00000214,0.0000115,0.187025554,0.851762939,pos,ns,-0.005970012,0.003357963,-1.777866891,0.07640592,neg,ns,1.116872993,0.0000989,0.00011548,0.856522459,0.392370456,pos,ns,0.846303337,Gm8637,Gm8637_Intergenic_downstream,8,96078190,96078239,96078238,96078239,50,-,TTGATTAGATAACATTTGTCAGCTGCATCAGCCGCAGGTAACTCCTGACG,Distal Intergenic,8,95921529,95922613,1085,1,Gm8637-201,156710,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,4,667445,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13424,cg14015282,0.00000306,0.0000013,2.35685353,0.01905219,gain,ns,0.000000413,0.00000221,0.186950758,0.851821533,pos,ns,0.00000587,0.000646594,0.009081911,0.992759625,pos,ns,0.003155894,-0.00000882,0.0000222,-0.396457216,0.692040527,neg,ns,0.038924641,Sp5,Sp5_Promoter,2,70474793,70474842,70474793,70474794,50,-,CGCGGGTCTCCAGGCGGCAAGGCCCCCTTTGATCAGGAAAATCCAATTAT,Promoter (<=1kb),2,70474923,70477729,2807,1,Sp5-201,-130,Sp5-201,Sp5,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,4,11,64406,ENSMUSG00000075304,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
4827,cg08573412,-0.00000101,0.00000317,-0.317219062,0.751290926,loss,ns,-0.00000101,0.00000539,-0.186834217,0.851912831,neg,ns,-0.00174549,0.001578838,-1.105553472,0.269777098,neg,ns,0.568994922,0.0000239,0.0000543,0.440121511,0.660155807,pos,ns,0.962254251,Mapre3,Mapre3_Exon,5,30863290,30863339,30863338,30863339,50,-,CTATGATGGAAAGGATTACAACCCTCTGCTGGCGCGGCAGGGCCAGGACG,"Exon (Mapre3-201/Mapre3, exon 4 of 7)",5,30814641,30866106,51466,1,Mapre3-201,48649,Mapre3-201;Mapre3-203;Mapre3-202;Mapre3-205;Mapre3-206;Mapre3-204;Tmem214-202,Mapre3;Mapre3;Mapre3;Mapre3;Mapre3;Mapre3;Tmem214,0;0;0;0;0;-1183;-4673,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,6,100732,ENSMUSG00000029166,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21780,cg12741673,-0.00000214,0.00000194,-1.100493639,0.271970903,loss,ns,0.000000616,0.0000033,0.186809425,0.851932253,pos,ns,0.000466792,0.000965731,0.483355527,0.629184532,pos,ns,0.201221963,-0.0000139,0.0000332,-0.417882948,0.676322002,neg,ns,0.943551897,Gm1943,Gm1943_Intron,8,109124067,109124116,109124115,109124116,50,-,AGCATTGCTTGGGGATGTGTTTGTATCTTTTGTCTAAAAATACCCAGCCG,"Intron (D030068K23Rik-202/D030068K23Rik-202, intron 2 of 9)",8,109340691,109340864,174,2,Gm1943-201,216797,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,28,384864,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25739,cg03519456,-0.00000102,0.000000876,-1.163394794,0.245564056,loss,ns,0.000000278,0.00000149,0.186776574,0.851957989,pos,ns,-0.000348483,0.000435837,-0.799570709,0.424571797,neg,ns,0.372048858,0.0000061,0.000015,0.407212166,0.684133203,pos,ns,0.97047656,Rap1gds1,Rap1gds1_threeUTR,3,138983734,138983783,138983782,138983783,50,+,TATAGTTCATCAGCATGCCACAAAAGACAGTCAAGAGCTTCTCATTGGCG,3' UTR,3,138925902,139075201,149300,2,Rap1gds1-202,91418,Rap1gds1-202;Rap1gds1-205;Rap1gds1-201;Rap1gds1-204;Rap1gds1-209;Rap1gds1-208,Rap1gds1;Rap1gds1;Rap1gds1;Rap1gds1;Rap1gds1;Rap1gds1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,2,229877,ENSMUSG00000028149,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
676,cg10630507,-0.0000068,0.0000065,-1.046498671,0.296146131,loss,ns,-0.00000206,0.000011,-0.186661749,0.852047945,neg,ns,0.00480072,0.003234565,1.484193388,0.138773669,pos,ns,0.857692928,-0.000329273,0.000111236,-2.960121708,0.00331239,neg,ns,0.890239492,Otud5,Otud5_Exon,X,7874269,7874318,7874269,7874270,50,-,CGGTGCTGGCAGTGTCCCAACAGGAATACCTAGACAGTATGAAGAAAAAC,"Exon (Otud5-201/Otud5, exon 9 of 9)",20,7841831,7876626,34796,1,Otud5-201,32438,Otud5-201;Otud5-203;Otud5-204;Otud5-205;Otud5-202;Otud5-208;Pim2-202;Pim2-201;Pim2-203,Otud5;Otud5;Otud5;Otud5;Otud5;Otud5;Pim2;Pim2;Pim2,0;0;0;0;0;0;-3944;-3984;-4300,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,54644,ENSMUSG00000031154,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
626,cg15712548,0.000142027,0.0000113,12.52620584,2.09E-29,gain,yes,-0.0000036,0.0000193,-0.186661386,0.852048229,neg,ns,0.014667455,0.005643222,2.599127594,0.00979305,pos,ns,2.009082009,-0.000196722,0.00019407,-1.013666749,0.311532296,neg,ns,0.717009343,Rbfox1,Rbfox1_Exon,16,7292247,7292296,7292247,7292248,50,+,CGGCACCGTGGTAGAGGGCCGTAAAATCGAGGTGCATGTTCAAAATATTT,"Exon (Rbfox1-205/Rbfox1, exon 8 of 12)",16,5885355,7353045,1467691,1,Rbfox1-205,1406892,Rbfox1-205;Rbfox1-201;Rbfox1-202;Rbfox1-203;Rbfox1-208;Rbfox1-207,Rbfox1;Rbfox1;Rbfox1;Rbfox1;Rbfox1;Rbfox1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,35,268859,ENSMUSG00000008658,conserved gene and region,16,7292196,7292275,80,*,80,9,0.5375,1.773399015,0.1125,0.00000013,CpGisland,TRUE,U15,NS
20786,cg19097257,-0.0000016,0.00000286,-0.559516431,0.576213343,loss,ns,-0.000000905,0.00000485,-0.186450168,0.852213707,neg,ns,0.006941401,0.001421795,4.882140364,0.00000168,pos,ns,5.773900767,-0.000233561,0.0000489,-4.776740844,0.00000275,neg,ns,0.900438198,Tlk2,Tlk2_Exon,11,105210554,105210603,105210602,105210603,50,+,GGAAGCGGGCCAGGAACCAGCCCTGGCAGAAGTGTTCCACCAGTTGCACG,"Exon (Tlk2-204/Tlk2, exon 6 of 22)",11,105178807,105283959,105153,1,Tlk2-203,31747,Tlk2-203;Tlk2-206;Tlk2-204;Tlk2-202;Tlk2-201;Tlk2-209;Tlk2-207;Tlk2-211;Tlk2-205;Tlk2-212,Tlk2;Tlk2;Tlk2;Tlk2;Tlk2;Tlk2;Tlk2;Tlk2;Tlk2;Tlk2,0;29808;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,5,24086,ENSMUSG00000020694,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9362,cg00833037,-0.0000141,0.00000464,-3.045804951,0.002519838,loss,ns,0.00000147,0.00000789,0.186393375,0.852258203,pos,ns,-0.002790826,0.002311492,-1.207370001,0.228210076,neg,ns,0.641665184,-0.0000417,0.0000795,-0.524330524,0.600423372,neg,ns,0.907481147,Tenm3,Tenm3_fiveUTR,8,48417018,48417067,48417066,48417067,50,+,GTGGTACATTACTGCCAAGGACCCAGCTGTCCTGCAGCTGGACGGACTCG,5' UTR,8,48227682,48674690,447009,2,Tenm3-201,257623,Tenm3-201;Tenm3-206;Tenm3-204;Tenm3-208;Tenm3-203;Tenm3-202,Tenm3;Tenm3;Tenm3;Tenm3;Tenm3;Tenm3,0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,7,39,23965,ENSMUSG00000031561,conserved gene but different region,8,48417060,48417110,51,*,51,7,0.745098039,1.0625,0.137254902,0.00000149,CpGisland,TRUE,U15,NS
2449,cg19595598,0.0000959,0.0000192,5.007267078,0.000000928,gain,yes,0.00000607,0.0000325,0.186368946,0.852277342,pos,ns,0.028105426,0.009534717,2.947693714,0.003444649,pos,ns,2.462854987,-0.000356227,0.000327898,-1.086396455,0.278147658,neg,ns,0.311916132,Gm12026,Gm12026_Intergenic_downstream,11,19475540,19475589,19475588,19475589,50,-,TCCAAAAGGCATTACCCTGAGCTCCAAGGTGGAGCTGTTTACCAATACCG,Distal Intergenic,11,19383685,19384708,1024,1,Gm12026-201,91904,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,4,635455,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14356,cg14106853,-0.000038,0.00000767,-4.955507742,0.00000119,loss,yes,0.00000243,0.000013,0.186295215,0.852335108,pos,ns,-0.006947344,0.003816177,-1.820498275,0.069647224,neg,ns,1.157096191,0.0000334,0.000131238,0.254568027,0.799225542,pos,ns,0.76688064,Des,Des_Exon,1,75362947,75362996,75362995,75362996,50,+,CAAGCAGGAGATGATGGAATACCGACACCAGATCCAGTCCTACACCTGCG,"Exon (Des-201/Des, exon 5 of 9)",1,75360329,75368579,8251,1,Des-201,2618,Des-201;Des-203;Des-202,Des;Des;Des,0;1421;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,13346,ENSMUSG00000026208,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26494,cg18689191,-0.000000741,0.00000186,-0.399054587,0.690127738,loss,ns,-0.000000588,0.00000316,-0.186232375,0.852384343,neg,ns,-0.001947629,0.00092439,-2.106934525,0.035926415,neg,ns,1.444586117,0.0000169,0.0000318,0.53120779,0.595655189,pos,ns,0.055741667,Casz1,Casz1_Intron,4,148805907,148805956,148805955,148805956,50,-,CCGGTTTATTTTTACTCGGTGGCATTTGCAGAATGTGCAGCTGATGGCCG,"Intron (Casz1-201/Casz1, intron 1 of 15)",4,148804429,148945129,140701,1,Casz1-201,1478,Casz1-201;Casz1-202;Casz1-203,Casz1;Casz1;Casz1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,94,124,69743,ENSMUSG00000028977,mapped to different genes,4,148805744,148806251,508,*,508,44,0.657480315,0.845225941,0.086614173,8.22E-31,CpGisland,TRUE,U3,Pr-B
16816,cg25662803,-0.000000664,0.00000361,-0.183962587,0.854163079,loss,ns,-0.00000114,0.00000614,-0.186210205,0.852401712,neg,ns,0.000540513,0.00179779,0.300654312,0.763879647,pos,ns,0.116975061,0.0000301,0.0000618,0.486726228,0.626796295,pos,ns,0.911412293,Lrba,Lrba_Exon,3,86605936,86605985,86605936,86605937,50,+,CGTCGTTATCTTTTGCAAAATACAGCCCTGGAGATCTTTATGGCAAACAG,"Exon (Lrba-202/Lrba, exon 41 of 51)",3,86224680,86746712,522033,1,Lrba-202,381256,Lrba-202;Lrba-204;Lrba-201;Lrba-203;Lrba-205;Lrba-206,Lrba;Lrba;Lrba;Lrba;Lrba;Lrba,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,17,45,80877,ENSMUSG00000028080,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20193,cg17020935,-0.00000504,0.000012,-0.420990051,0.674054065,loss,ns,-0.00000378,0.0000203,-0.186192973,0.852415214,neg,ns,-0.010476404,0.005954401,-1.75943889,0.079489389,neg,ns,1.099690841,0.000539221,0.000204771,2.633284863,0.008880308,pos,ns,0.649368338,Sgip1,Sgip1_Exon,4,102934565,102934614,102934565,102934566,50,-,CGTTTGGTTTGACAGAGGAAAGTTTTATTTGACTTTTGAAGGTAAGTAGT,"Exon (Sgip1-201/Sgip1, exon 17 of 24)",4,102760135,102971983,211849,1,Sgip1-201,174430,Sgip1-201;Sgip1-202;Sgip1-203;Sgip1-205;Sgip1-213,Sgip1;Sgip1;Sgip1;Sgip1;Sgip1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,6,73094,ENSMUSG00000028524,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15879,cg14562454,0.0000697,0.00000527,13.21875492,6.07E-32,gain,yes,0.00000167,0.00000896,0.186187075,0.852419835,pos,ns,0.013404404,0.002623995,5.108395715,0.000000569,pos,ns,6.245045853,-0.000269362,0.0000902,-2.984984593,0.003061646,neg,ns,0.1067172,Gm6411,Gm6411_Exon,13,83739744,83739793,83739792,83739793,50,+,GGGGGTGGGGAATCTGAGGGTCTGTCTTGCCTAATTGATTCCGCTAAACG,"Exon (C130071C03Rik-201/C130071C03Rik-201, exon 4 of 4)",13,83761132,83762335,1204,2,Gm6411-201,22542,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,36,623241,NA,mapped to different genes,13,83739785,83739863,79,*,79,8,0.620253165,1.074829932,0.101265823,0.00000199,CpGisland,TRUE,U3,Pr-B
24018,cg23477051,-0.00000201,0.000000966,-2.080072014,0.038340168,loss,ns,-0.000000305,0.00000164,-0.186113548,0.852477444,neg,ns,-0.000397213,0.00048061,-0.826477693,0.409168822,neg,ns,0.388097466,-0.0000145,0.0000165,-0.876632574,0.381365046,neg,ns,0.011192388,Banp,Banp_fiveUTR,8,121950615,121950664,121950615,121950616,50,-,CGACAAACACCACGAGAATTCCGCAGCCCACACGGTAATTGCAGCTCCCG,Promoter (<=1kb),8,121949750,121997183,47434,1,Banp-207,865,Banp-207;Banp-202;Banp-204;Banp-208;Banp-201;Banp-216;Banp-215;Banp-205;Galnt2l-201,Banp;Banp;Banp;Banp;Banp;Banp;Banp;Banp;Galnt2l,0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,4,53325,ENSMUSG00000025316,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
26533,cg17879293,0.0000129,0.00000653,1.973475745,0.049329229,gain,ns,0.00000206,0.0000111,0.18594169,0.852612098,pos,ns,-0.005569592,0.003250578,-1.713416129,0.087635735,neg,ns,1.057318765,0.000380036,0.000111787,3.399636856,0.000763034,pos,ns,0.82897793,Casz1,Casz1_Intron,4,148888378,148888427,148888426,148888427,50,-,TAATGAAGTGCAACTGCTGAGGGATTTGGGTTCAGCGCTCCGGTCTCCCG,"Intron (Casz1-201/Casz1, intron 2 of 15)",4,148804429,148945129,140701,1,Casz1-201,83949,Casz1-201;Casz1-202;Casz1-205,Casz1;Casz1;Casz1,0;0;-954,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,94,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22429,cg06383637,-0.00000359,0.00000575,-0.623807884,0.533212504,loss,ns,-0.00000182,0.00000977,-0.185907341,0.852639012,neg,ns,-0.001639623,0.002863584,-0.572576997,0.567346165,neg,ns,0.246151876,-0.0000275,0.0000985,-0.279118478,0.780340019,neg,ns,0.830357668,Mvk,Mvk_Intergenic_downstream,5,114507462,114507511,114507462,114507463,50,-,CGGGAATGTCGCCTAATGCATTCATATCAAACAATAGCGCCTCATACATC,Distal Intergenic,5,114452420,114460572,8153,1,Mvk-207,55091,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,7,17855,ENSMUSG00000041939,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4001,cg18335469,0.00000547,0.00000272,2.010658777,0.045227167,gain,ns,0.000000858,0.00000462,0.185901554,0.852643546,pos,ns,0.002268099,0.00135285,1.676533614,0.094641816,pos,ns,1.023916935,-0.0000786,0.0000465,-1.690345143,0.091967152,neg,ns,0.062813142,L3mbtl3,L3mbtl3_Exon,10,26375929,26375978,26375977,26375978,50,+,TTTTTTTTCTCCGTCTCACGAGTAGTCCTGACAAATGGTCCAGGGCTGCG,Promoter (<=1kb),10,26333858,26375971,42114,2,L3mbtl3-204,0,L3mbtl3-202;L3mbtl3-201;L3mbtl3-203;L3mbtl3-204,L3mbtl3;L3mbtl3;L3mbtl3;L3mbtl3,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,6,237339,ENSMUSG00000039089,conserved gene but different region,10,26375901,26376243,343,*,343,34,0.629737609,1.005344828,0.099125364,5.12E-26,CpGisland,TRUE,NA,NRS
15878,cg16376499,0.00000328,0.00000171,1.915524738,0.056345409,gain,ns,0.00000054,0.00000291,0.185828097,0.852701103,pos,ns,0.00090251,0.000851136,1.060359721,0.289806418,pos,ns,0.537892001,-0.00002,0.0000293,-0.683532032,0.494781286,neg,ns,0.033812467,Gm6411,Gm6411_Exon,13,83739669,83739718,83739717,83739718,50,+,GGTCTATCCAGGAAACAGCTCTGGCATCCCAAACTGAAATAATTAGGACG,"Exon (C130071C03Rik-201/C130071C03Rik-201, exon 4 of 4)",13,83761132,83762335,1204,2,Gm6411-201,22617,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,36,623241,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
21503,cg25242626,0.0000274,0.00000416,6.592682764,1.86E-10,gain,yes,-0.00000131,0.00000707,-0.185627446,0.852858326,neg,ns,0.007675021,0.002070492,3.706859138,0.000248506,pos,ns,3.604663529,-0.000186018,0.0000712,-2.61246222,0.009427174,neg,ns,0.058561266,Bcl11b,Bcl11b_Promoter,12,108004172,108004221,108004172,108004173,50,-,CGACTAGCGGTGGCTTTTTAACATTGTACCCTGTAAGAGAACAAGAAAGC,Promoter (<=1kb),12,107910403,108003602,93200,2,Bcl11b-201,-619,Bcl11b-201;Bcl11b-202;Bcl11b-203,Bcl11b;Bcl11b;Bcl11b,0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,8,39,58208,ENSMUSG00000048251,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
1679,cg01839446,-0.0000139,0.00000596,-2.33624209,0.020115668,loss,ns,-0.00000188,0.0000101,-0.185461604,0.852988279,neg,ns,-0.008747531,0.002964347,-2.950913537,0.003409928,neg,ns,2.467254796,0.000375421,0.000101944,3.682631982,0.000272261,pos,ns,0.902806522,Eya1,Eya1_fiveUTR,1,14302859,14302908,14302859,14302860,50,+,CGGCTATGCGGGCTGGTTAGATCCTGCATTTCCATAGACCTAAAGACAAG,5' UTR,1,14168954,14310200,141247,2,Eya1-201,7292,Eya1-201;Eya1-203;Eya1-202;Eya1-209;Eya1-207;Eya1-205;Eya1-206;Eya1-204,Eya1;Eya1;Eya1;Eya1;Eya1;Eya1;Eya1;Eya1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,4,14048,ENSMUSG00000025932,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11854,cg00039469,0.0000135,0.00000934,1.448404259,0.148514698,gain,ns,-0.00000294,0.0000159,-0.185432713,0.853010918,neg,ns,0.001697227,0.004648395,0.365121046,0.71527003,pos,ns,0.145529972,-0.000378962,0.000159858,-2.370618411,0.018369777,neg,ns,0.762920453,Gm11591,Gm11591_Promoter,1,61198136,61198185,61198136,61198137,50,+,CGATGAGGCTATCTGTGTGGCTATCAGCAACATTAGTCCTCTGGTGAATC,Promoter (<=1kb),1,61196541,61197242,702,2,Gm11591-201,-894,Gm11591-201,Gm11591,-894,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,3,100042566,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10608,cg09295275,0.00000112,0.00000404,0.277924008,0.781255961,gain,ns,0.00000127,0.00000686,0.185378615,0.85305331,pos,ns,-0.001485868,0.002008309,-0.739860116,0.459944798,neg,ns,0.337294289,0.0000942,0.0000691,1.363813703,0.173615658,pos,ns,0.896182624,Gm12477,Gm12477_Intron,4,54652695,54652744,54652743,54652744,50,-,TTTTCTTTCAGACGCTCTGAAAAGGTCAGCCTGTTCGTTTCTTAGACGCG,"Intron (Gm12478-201/Gm12478-201, intron 1 of 1)",4,54669622,54670192,571,2,Gm12477-201,17497,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,6,100416401,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25353,cg00877739,0.0000206,0.00000701,2.937533244,0.003556347,gain,ns,0.00000221,0.0000119,0.185278901,0.853131449,pos,ns,-0.000971584,0.003486986,-0.278631484,0.780713418,neg,ns,0.107508356,0.0000391,0.000119917,0.326198259,0.744494457,pos,ns,0.778476564,Grin2b,Grin2b_Exon,6,135732323,135732372,135732323,135732324,50,-,CGTGGGCTGCCTGAAGAAGTAGGATTTGCTGCCATGGAGCAAGCACTGGT,"Exon (Grin2b-201/Grin2b, exon 14 of 14)",6,135713233,136173125,459893,2,Grin2b-201,440753,Grin2b-201;Grin2b-202,Grin2b;Grin2b,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,5,14812,ENSMUSG00000030209,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11873,cg19935481,-0.0000149,0.00000505,-2.952445454,0.003393521,loss,ns,-0.00000159,0.00000859,-0.185049526,0.853311198,neg,ns,-0.00096403,0.002515517,-0.383233447,0.701809348,neg,ns,0.153780852,-0.000143287,0.0000865,-1.656331328,0.098666525,neg,ns,0.043368059,Tle3,Tle3_Promoter,9,61372208,61372257,61372256,61372257,50,-,TTGCTACTTTTCATGCATAGTTTTAGACACAAGAGGGCATTGTGACGTCG,Promoter (<=1kb),9,61372366,61418497,46132,1,Tle3-218,-158,Tle3-218;Tle3-204;Tle3-201;Tle3-215;Tle3-212;Tle3-208;Tle3-207;Tle3-217;Tle3-202;Tle3-206;Tle3-210;Tle3-205;Tle3-211;Tle3-209;Tle3-213,Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,11,30,21887,ENSMUSG00000032280,conserved gene but different region,9,61372253,61372343,91,*,91,13,0.736263736,1.065765766,0.142857143,2.25E-12,CpGisland,TRUE,U6,En-Sp
14538,cg05618548,-0.000000394,0.00000384,-0.102570795,0.91836994,loss,ns,0.00000121,0.00000653,0.185049506,0.853311213,pos,ns,0.000840462,0.001912141,0.439539732,0.660576745,pos,ns,0.180076719,-0.0000999,0.0000658,-1.519600465,0.129630649,neg,ns,0.044314736,Nrip1,Nrip1_fiveUTR,16,76373016,76373065,76373016,76373017,50,+,CGCCTCCCGAGTTCGGGGCTCTGCTGCAATGTCTGCGAGGCTGACTTTGA,Promoter (<=1kb),16,76290862,76373049,82188,2,Nrip1-201,0,Nrip1-202;Nrip1-201;Nrip1-208;Nrip1-207;Nrip1-205;Nrip1-203;Nrip1-206,Nrip1;Nrip1;Nrip1;Nrip1;Nrip1;Nrip1;Nrip1,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,8,268903,ENSMUSG00000048490,conserved gene and region,16,76372209,76373156,948,*,948,139,0.778481013,0.969367938,0.146624473,1.33E-131,CpGisland,TRUE,U1,Pr-A
25032,cg17860762,-0.00000638,0.0000025,-2.554682522,0.011106097,loss,ns,-0.000000785,0.00000424,-0.185042133,0.853316992,neg,ns,-0.002201499,0.001243301,-1.77068811,0.077595253,neg,ns,1.110164849,0.0000198,0.0000428,0.463827751,0.643096676,pos,ns,0.938703993,Fgfr2,Fgfr2_Intron,7,131712966,131713015,131713014,131713015,50,-,AATTACCACTTCCATCCATCGGCAAAGTCCCTATTTTATTTTAATCTGCG,"Intron (Fgfr2-217/Fgfr2, intron 2 of 6)",7,130162451,133123350,2960900,2,Fgfr2-217,1410335,Fgfr2-217,Fgfr2,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,58,79,14183,ENSMUSG00000030849,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17962,cg03769983,0.00000652,0.00000441,1.477787008,0.14048004,gain,ns,-0.00000139,0.0000075,-0.185025801,0.853329791,neg,ns,-0.000672416,0.002196248,-0.306165968,0.759683798,neg,ns,0.119367136,-0.00012337,0.0000755,-1.633417341,0.103396432,neg,ns,0.894094777,Mageb18,Mageb18_Intergenic_upstream,X,92880954,92881003,92880954,92880955,50,+,CGCCTGCTGACTGATGAAAATGACTGACGCTGGGGCGCCAGCTGAAAAAT,Distal Intergenic,20,92118879,92599572,480694,2,Mageb18-202,-281382,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,215641,ENSMUSG00000067649,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22792,cg16273620,0.0000356,0.00000396,8.978949031,2.71E-17,gain,yes,0.00000124,0.00000673,0.184968672,0.853374561,pos,ns,0.008428841,0.001970859,4.276734112,0.0000253,pos,ns,4.597074471,-0.000177892,0.0000678,-2.624633126,0.009103974,neg,ns,0.111196333,Dmbx1,Dmbx1_Intergenic_upstream,4,115955271,115955320,115955319,115955320,50,-,GACCAGGCATCAGATTGGAGTCAAGATTCCGAGAGTGTCATTTGCCGCCG,Distal Intergenic,4,115915119,115939926,24808,2,Dmbx1-203,-15394,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,15,42,140477,ENSMUSG00000028707,mapped to different genes,4,115955251,115955377,127,*,127,13,0.661417323,0.971176471,0.102362205,2.30E-10,CpGisland,TRUE,U13,Hc-P
24559,cg24797698,-0.00000179,0.00000237,-0.756367392,0.450003358,loss,ns,0.000000744,0.00000402,0.18494891,0.853390048,pos,ns,0.001425419,0.00117814,1.209888885,0.22724332,pos,ns,0.643508874,-0.0000337,0.0000405,-0.831883465,0.406115068,neg,ns,0.946543668,Ank2,Ank2_Exon,3,127013267,127013316,127013267,127013268,50,-,CGTTGCAAGAGAAGTTTTGCCACATCCAGGCTTCCATACTTGGCTGCTAC,"Exon (Ank2-208/Ank2, exon 17 of 46)",3,126921614,127409059,487446,2,Ank2-208,395743,Ank2-208;Ank2-207;Ank2-218;Ank2-220;Ank2-224,Ank2;Ank2;Ank2;Ank2;Ank2,0;0;0;0;10932,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,7,109676,ENSMUSG00000032826,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17454,cg20657145,0.00000888,0.00000541,1.641016816,0.101808072,gain,ns,0.0000017,0.00000919,0.184697065,0.853587418,pos,ns,-0.000968884,0.002692544,-0.359839462,0.719212207,neg,ns,0.14314295,-0.0000488,0.0000926,-0.526732988,0.598755713,neg,ns,0.857297785,Nrxn3,Nrxn3_threeUTR,12,90331608,90331657,90331656,90331657,50,-,CCAAAGATTCCCTGTCCATGACCTCTGAGGCGGGGTTACCTTGCTTGTCG,3' UTR,12,88722986,90332878,1609893,1,Nrxn3-213,1608622,Nrxn3-213;Nrxn3-208;Nrxn3-205;Nrxn3-201;Nrxn3-210;Nrxn3-214;Nrxn3-203;Nrxn3-202,Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,14,39,18191,ENSMUSG00000066392,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19438,cg12425327,-0.0000269,0.00000664,-4.06060998,0.000062,loss,ns,0.00000208,0.0000113,0.184664253,0.853613134,pos,ns,0.000195248,0.003302889,0.059114289,0.952899166,pos,ns,0.020953053,-0.000206842,0.000113586,-1.821012837,0.069568761,neg,ns,0.909060996,Gm12689,Gm12689_Intergenic_downstream,4,99313580,99313629,99313628,99313629,50,+,TGGCATTTATTCTTTATGTAGGAATATTTGTTCCTCAAAGTCAGACTACG,Distal Intergenic,4,99295900,99297258,1359,1,Gm12689-201,17680,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,12,26,100137011,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16464,cg13246416,-0.00000103,0.00000243,-0.423654058,0.672111919,loss,ns,0.000000761,0.00000412,0.184631497,0.853638805,pos,ns,0.002332589,0.001207478,1.931786103,0.054297086,pos,ns,1.265223479,-0.0000832,0.0000415,-2.00430406,0.045907033,neg,ns,0.952132152,Tnpo2,Tnpo2_Exon,8,85055188,85055237,85055236,85055237,50,-,TTCTTCTGCGATGCTGTAGCCTCCTGGGTGAGCCCGAAGGATGACCTTCG,"Exon (Tnpo2-201/Tnpo2, exon 23 of 25)",8,85036915,85057580,20666,1,Tnpo2-201,18273,Fbxw9-201;Fbxw9-203;Fbxw9-207;Tnpo2-201;Tnpo2-207;Tnpo2-202;Tnpo2-205;Tnpo2-204,Fbxw9;Fbxw9;Fbxw9;Tnpo2;Tnpo2;Tnpo2;Tnpo2;Tnpo2,-4818;-4819;-4860;0;0;0;0;4980,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,212999,ENSMUSG00000031691,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22895,cg03173324,-0.0000167,0.00000372,-4.494734072,0.00000985,loss,ns,-0.00000117,0.00000632,-0.18457148,0.853685842,neg,ns,-0.004145486,0.001851849,-2.238566691,0.025893624,neg,ns,1.586807161,-0.0000081,0.0000637,-0.127188988,0.898873282,neg,ns,0.912708922,Unc13d,Unc13d_Exon,11,116070479,116070528,116070527,116070528,50,-,ATGGGGTGCAGGAGGCAGCTGCTGGGGAACTCCAGGCTCTGGTAGAGGCG,"Exon (Unc13d-202/Unc13d, exon 13 of 32)",11,116062095,116077750,15656,2,Unc13d-202,7222,Unc13d-202;Unc13d-201;Unc13d-203;Unc13d-207;Unc13d-209;Unc13d-208;Unc13d-205,Unc13d;Unc13d;Unc13d;Unc13d;Unc13d;Unc13d;Unc13d,0;0;0;0;0;-124;7433,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,70450,ENSMUSG00000057948,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19296,cg22142552,0.0000306,0.00000289,10.56616275,1.72E-22,gain,yes,-0.000000907,0.00000491,-0.184517944,0.853727801,neg,ns,0.00444251,0.00143957,3.085997759,0.00221174,pos,ns,2.655265877,0.0000415,0.0000495,0.838877421,0.402184493,pos,ns,0.94291499,Foxp1,Foxp1_Exon,6,98944641,98944690,98944641,98944642,50,+,CGGAAGTAAGCAAACATTCGTGTGAACCAGTTATAGATCTCATTTAGTGT,"Exon (Foxp1-206/Foxp1, exon 14 of 18)",6,98925338,99266515,341178,2,Foxp1-206,321825,Foxp1-206;Foxp1-204;Foxp1-220;Foxp1-230;Foxp1-225;Foxp1-201;Foxp1-205;Foxp1-207;Foxp1-208;Foxp1-226;Foxp1-228;Foxp1-221;Foxp1-222;Foxp1-210,Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,87,108655,ENSMUSG00000030067,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2617,cg03125191,-0.00000891,0.00000319,-2.790031599,0.005596678,loss,ns,-0.000001,0.00000543,-0.184396326,0.853823119,neg,ns,-0.000466985,0.001589484,-0.29379671,0.769109853,neg,ns,0.114011625,0.0000121,0.0000547,0.22065247,0.825508294,pos,ns,0.911977045,Zswim8,Zswim8_Exon,14,20722646,20722695,20722694,20722695,50,-,TCCTAGCTCTTGCTCAGAGTTGAGGCCTTGGTCGGGTATGTGTGCGTGCG,"Exon (Zswim8-209/Zswim8, exon 12 of 13)",14,20707552,20723619,16068,1,Zswim8-201,15094,Ndst2-202;Ndst2-205;Ndst2-201;Ndst2-204;Ndst2-207;Zswim8-201;Zswim8-208;Zswim8-204;Zswim8-203;Zswim8-209;Zswim8-207;Zswim8-202;Zswim8-210;Zswim8-214,Ndst2;Ndst2;Ndst2;Ndst2;Ndst2;Zswim8;Zswim8;Zswim8;Zswim8;Zswim8;Zswim8;Zswim8;Zswim8;Zswim8,0;0;0;0;0;0;0;0;0;0;4045;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,13,14,268721,ENSMUSG00000021819,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22768,cg22616024,0.0000533,0.0000146,3.637316365,0.000322541,gain,ns,0.00000458,0.0000249,0.184285059,0.853910327,pos,ns,-0.010959379,0.007286603,-1.504044923,0.133587892,neg,ns,0.874232904,0.000559288,0.000250586,2.231923732,0.026334377,pos,ns,0.750299696,Dmbx1,Dmbx1_Intron,4,115932038,115932087,115932086,115932087,50,+,TTAAAAGAATCTTTATATTTCATTAAGCAAGCAGATCGGCGGATCTCCCG,"Intron (Dmbx1-203/Dmbx1, intron 1 of 4)",4,115915119,115939926,24808,2,Dmbx1-203,7839,Dmbx1-203;Dmbx1-202,Dmbx1;Dmbx1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,42,140477,ENSMUSG00000028707,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
4765,cg18890240,-0.0000027,0.00000921,-0.293502654,0.769334363,loss,ns,0.00000288,0.0000157,0.184273436,0.853919436,pos,ns,-0.004490279,0.004585483,-0.979237903,0.328226018,neg,ns,0.483826996,0.0000183,0.000157694,0.11598194,0.90774195,pos,ns,0.780814328,Ctnnd2,Ctnnd2_fiveUTR,15,30480776,30480825,30480824,30480825,50,-,TTTCAGGAATTACAGTTTGAAAGGCTGACCCGAGAGCTGGAGGCTGAACG,5' UTR,15,30172593,31029341,856749,1,Ctnnd2-201,308183,Ctnnd2-201;Ctnnd2-202;Ctnnd2-203;Ctnnd2-204;Ctnnd2-210;Ctnnd2-209;Ctnnd2-205,Ctnnd2;Ctnnd2;Ctnnd2;Ctnnd2;Ctnnd2;Ctnnd2;Ctnnd2,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,10,18163,ENSMUSG00000022240,conserved gene and region,15,30480806,30480944,139,*,139,10,0.597122302,0.816686252,0.071942446,0.00000141,CpGisland,TRUE,U15,NS
3823,cg25097115,-0.0000468,0.0000117,-3.982845563,0.0000849,loss,ns,-0.00000367,0.0000199,-0.184177153,0.853994902,neg,ns,-0.011079973,0.005843442,-1.896138135,0.05887147,neg,ns,1.230095122,-0.0000706,0.000200955,-0.351431563,0.725503345,neg,ns,0.798082879,5730522E02Rik,5730522E02Rik_Intergenic_downstream,11,25531368,25531417,25531416,25531417,50,+,ATTATGCACCTCTGACATGGAAAAATTGTGTTAGTTCTACAGAGAAAACG,Distal Intergenic,11,25602816,25620098,17283,2,5730522E02Rik-205,88681,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,21,90,70626,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26116,cg19325836,-0.0000287,0.00000821,-3.493025111,0.000547059,loss,ns,-0.00000257,0.000014,-0.184159666,0.854008607,neg,ns,-0.000189705,0.004087463,-0.046411464,0.963012183,neg,ns,0.016368218,-0.000301906,0.000140568,-2.147768094,0.032507077,neg,ns,0.886839809,Gm2505,Gm2505_Intergenic_downstream,3,143985785,143985834,143985785,143985786,50,+,CGTACTAATTAGAATTAGTTGTCCTTCTGTAGTCCAGCTCCTGACACAAA,Distal Intergenic,3,143872995,143873819,825,1,Gm2505-201,112790,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,37,100039938,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8863,cg07291145,0.0000439,0.0000167,2.625078503,0.009092338,gain,ns,0.00000523,0.0000284,0.184081235,0.854070081,pos,ns,0.030888764,0.008322855,3.71131836,0.000244352,pos,ns,3.611984157,-0.001027454,0.000286222,-3.58970698,0.000384697,neg,ns,0.675160079,Sik3,Sik3_Exon,9,46127025,46127074,46127025,46127026,50,+,CGGATGATTTATCTGGTGACAGAATATGCTAGTGGAGGGGAAATATTTGG,"Exon (Sik3-204/Sik3, exon 3 of 25)",9,46012820,46224194,211375,1,Sik3-204,114205,Sik3-204;Sik3-202;Sik3-201;Sik3-207;Sik3-203,Sik3;Sik3;Sik3;Sik3;Sik3,0;0;0;3895;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,5,70661,ENSMUSG00000034135,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
5460,cg01258963,0.00000283,0.00000408,0.693745839,0.488361111,gain,ns,0.00000127,0.00000693,0.183846169,0.854254332,pos,ns,0.004759276,0.002031461,2.342785247,0.019772559,pos,ns,1.70393713,-0.000162617,0.0000699,-2.327699961,0.020571451,neg,ns,0.879980504,Kalrn,Kalrn_Exon,16,34014097,34014146,34014097,34014098,50,-,CGGCGAGGACCTGGACCACCTCACCTTGGCTCACACAGATTTCATTCTCC,"Exon (Kalrn-212/Kalrn, exon 16 of 27)",16,33969073,34095987,126915,2,Kalrn-212,81841,Kalrn-212;Kalrn-201;Kalrn-220;Kalrn-209;Kalrn-211;Kalrn-217;Kalrn-210;Kalrn-221,Kalrn;Kalrn;Kalrn;Kalrn;Kalrn;Kalrn;Kalrn;Kalrn,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,18,22,545156,ENSMUSG00000061751,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18752,cg16095149,0.0000314,0.00000528,5.951357845,7.19E-09,gain,yes,-0.00000165,0.00000897,-0.183776585,0.854308875,neg,ns,0.005969188,0.002627513,2.271801324,0.023783495,pos,ns,1.623724324,-0.000133766,0.0000904,-1.480373517,0.139789169,neg,ns,0.03975346,Dscam,Dscam_fiveUTR,16,97170238,97170287,97170238,97170239,50,+,CGCGAAGCTCTGGAACAAGGAGAGAGCCAGTATCCACATGCCCCTGCCGC,Promoter (<=1kb),16,96590840,97170752,579913,2,Dscam-201,465,Dscam-201,Dscam,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,12,13508,ENSMUSG00000050272,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
13223,cg05524242,-0.00000219,0.00000198,-1.106314681,0.269448117,loss,ns,0.000000618,0.00000336,0.183752415,0.85432782,pos,ns,-0.001037983,0.0009848,-1.05400418,0.292701803,neg,ns,0.533574602,0.0000563,0.0000339,1.663426057,0.097237745,pos,ns,0.966510483,Atp13a1,Atp13a1_threeUTR,8,69799794,69799843,69799842,69799843,50,-,CAGGGGCTGAAAATTCACCAGCGCTTTCATTTTGCCAGTGCCCTGAAGCG,3' UTR,8,69791163,69807749,16587,1,Atp13a1-201,8631,Atp13a1-201;Atp13a1-206;Atp13a1-207;Atp13a1-211;Atp13a1-202;Atp13a1-204;Atp13a1-205;Atp13a1-203;Atp13a1-209,Atp13a1;Atp13a1;Atp13a1;Atp13a1;Atp13a1;Atp13a1;Atp13a1;Atp13a1;Atp13a1,0;0;0;2841;2824;2705;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,3,170759,ENSMUSG00000031862,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13182,cg20244288,-0.0000256,0.00000506,-5.0628276,0.00000071,loss,yes,-0.00000158,0.00000859,-0.18373181,0.854343971,neg,ns,-0.006068528,0.002516014,-2.411960668,0.016447726,neg,ns,1.783894142,-0.000100832,0.0000865,-1.165342842,0.24477613,neg,ns,0.829794624,Tcf4,Tcf4_Intron,18,69675317,69675366,69675317,69675318,50,+,CGGACATGATAGAAGACAGATGGGTACGAATCAGTGCGCTCCACTGCAGC,"Intron (Tcf4-201/Tcf4, intron 16 of 20)",18,69344146,69684343,340198,1,Tcf4-201,331171,Tcf4-201;Tcf4-207;Tcf4-240;Tcf4-254;Tcf4-246;Tcf4-206;Tcf4-202;Tcf4-257;Tcf4-248;Tcf4-205;Tcf4-253;Tcf4-238;Tcf4-249;Tcf4-250;Tcf4-226;Tcf4-230;Tcf4-234;Tcf4-258;Tcf4-252;Tcf4-243;Tcf4-204;Tcf4-222;Tcf4-255;Tcf4-203;Tcf4-251;Tcf4-214,Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,42,66,21413,ENSMUSG00000053477,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2745,cg16342115,0.0000926,0.00000942,9.832960383,4.89E-20,gain,yes,-0.00000294,0.000016,-0.18370489,0.854365073,neg,ns,0.018339261,0.004687318,3.91252767,0.00011229,pos,ns,3.949657516,-0.000447929,0.000161196,-2.778779437,0.00578928,neg,ns,0.143733259,Klhl14,Klhl14_Promoter,18,21654817,21654866,21654817,21654818,50,-,CGCAAAATTATGGCTCAAGGCTATTGTAAAAATTGTCGAGCGTAAATGAC,Promoter (<=1kb),18,21550379,21654718,104340,2,Klhl14-202,-148,Klhl14-201;Klhl14-202,Klhl14;Klhl14,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,3,38,225266,ENSMUSG00000042514,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
16651,cg10930156,0.000051,0.00000326,15.63556617,4.92E-41,gain,yes,-0.00000102,0.00000554,-0.183666679,0.854395026,neg,ns,0.001639,0.001622026,1.010464801,0.31306069,pos,ns,0.504371462,0.0000802,0.0000558,1.437109241,0.151695485,pos,ns,0.084709378,Tbx2,Tbx2_fiveUTR,11,85832710,85832759,85832710,85832711,50,+,CGGAGACCCACAATTGGTCCAAAAAGCGTAAAATCAGCAATCAAGGGGGG,Promoter (<=1kb),11,85832551,85841948,9398,1,Tbx2-201,159,Tbx2-201,Tbx2,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,12,14,21385,ENSMUSG00000000093,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
5728,cg04780462,-0.0000182,0.0000101,-1.812760788,0.070835899,loss,ns,-0.00000314,0.0000171,-0.183644127,0.854412703,neg,ns,-0.011980336,0.005008401,-2.392048311,0.017350127,neg,ns,1.760697351,0.000161557,0.000172238,0.937983296,0.348983199,pos,ns,0.762724259,Cdc23,Cdc23_Exon,18,34634427,34634476,34634475,34634476,50,-,GAAGCTTCATCCCACAGTTTGCACTTAAAATAGTACTGGGCCAGATAGCG,"Exon (Cdc23-201/Cdc23, exon 15 of 17)",18,34630951,34651735,20785,2,Cdc23-201,17259,Cdc23-201;Cdc23-203;Cdc23-206;Cdc23-202;Cdc23-208;Kif20a-202;Kif20a-205;Kif20a-206;Kif20a-201;Kif20a-204,Cdc23;Cdc23;Cdc23;Cdc23;Cdc23;Kif20a;Kif20a;Kif20a;Kif20a;Kif20a,0;0;0;0;3395;9814;9692;9420;9394;5504,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,52563,ENSMUSG00000024370,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23936,cg07509309,0.0000507,0.0000198,2.555310889,0.011086488,gain,ns,-0.00000618,0.0000337,-0.183585335,0.854458788,neg,ns,0.053934441,0.009868049,5.46556245,0.000000095,pos,ns,7.022375312,-0.001418709,0.000339361,-4.18052489,0.0000379,neg,ns,0.412189542,Insig2,Insig2_Exon,1,121227249,121227298,121227249,121227250,50,+,CGGCAATACCCAACAAATGACTTTGGCCCCTAACAGCAGGTCTTGGCCAG,"Exon (Gm29359-201/Gm29359-201, exon 2 of 2)",1,121305893,121307318,1426,2,Insig2-206,80020,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,17,72999,ENSMUSG00000003721,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11612,cg25317101,0.0000182,0.00000452,4.034567236,0.000069,gain,ns,-0.00000141,0.00000768,-0.183482733,0.854539217,neg,ns,0.005418475,0.002249833,2.408389723,0.016606441,pos,ns,1.779723426,-0.0000718,0.0000774,-0.9275819,0.354346115,neg,ns,0.109234377,Emx2,Emx2_Intergenic_downstream,19,59466036,59466085,59466084,59466085,50,+,CCTGATAGGCTGCATTAATCAGTTTTATTTCCATTGATAGAGAAACCTCG,Distal Intergenic,19,59462802,59464215,1414,1,Emx2-203,3234,Emx2-201;Emx2-202;Emx2-203,Emx2;Emx2;Emx2,0;6517;3234,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,15,23,13797,ENSMUSG00000043969,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
26992,cg17046667,0.00000369,0.0000051,0.723089447,0.470170138,gain,ns,0.00000159,0.00000866,0.183468361,0.854550483,pos,ns,0.0000606,0.002537727,0.023869892,0.980971747,pos,ns,0.0083435,-0.0000275,0.0000873,-0.314746846,0.753165612,neg,ns,0.900085003,Gdf5,Gdf5_Exon,2,155942096,155942145,155942096,155942097,50,-,CGTTCCCAGGCCTCCAGCTCCAGGCACAGCTGGGCCGAGTTCTTAAAGTT,"Exon (Gm15557-201/Gm15557, exon 2 of 2)",2,155941023,155945367,4345,2,Gdf5-201,3222,Gdf5-201;Gm15557-201,Gdf5;Gm15557,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,6,14563,ENSMUSG00000038259,mapped to different genes,2,155941967,155942331,365,*,365,24,0.616438356,0.697119211,0.065753425,3.01E-14,CpGisland,TRUE,U11,Tr-P
17133,cg21500489,-0.00000219,0.00000205,-1.065068337,0.287673857,loss,ns,-0.00000064,0.00000349,-0.183465859,0.854552444,neg,ns,-0.002419167,0.001021882,-2.367364961,0.018529101,neg,ns,1.732145644,0.0000821,0.0000351,2.337419728,0.020053533,pos,ns,0.969667531,Msi2,Msi2_threeUTR,11,88685933,88685982,88685981,88685982,50,-,ATTTACCACCACACAAGGCTATTCATCTTCTCTGGGTTATTTATTGCTCG,3' UTR,11,88339382,88718229,378848,2,Msi2-203,32247,Msi2-203;Msi2-201;Msi2-205;Msi2-206;Msi2-202,Msi2;Msi2;Msi2;Msi2;Msi2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,36,76626,ENSMUSG00000069769,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16380,cg13057862,0.0000272,0.0000117,2.325862354,0.020670674,gain,ns,-0.00000365,0.0000199,-0.18341303,0.854593856,neg,ns,0.033762711,0.005824765,5.796407372,1.67E-08,pos,ns,7.778089479,-0.000818499,0.000200313,-4.086098406,0.0000559,neg,ns,0.828015998,Nfix,Nfix_Intron,8,84787728,84787777,84787776,84787777,50,-,ACAGGTTGTGTGTGAGACTGTGCGTGGACGACAGATTGTGCCGGTGTGCG,"Intron (Nfix-201/Nfix, intron 1 of 8)",8,84708614,84800140,91527,2,Nfix-201,12363,Nfix-201;Nfix-202;Nfix-205,Nfix;Nfix;Nfix,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,49,18032,ENSMUSG00000001911,conserved gene and region,8,84787750,84787833,84,*,84,10,0.678571429,1.111111111,0.119047619,1.08E-08,CpGisland,TRUE,U13,Hc-P
19439,cg02044556,-0.0000304,0.00000553,-5.497463697,8.06E-08,loss,yes,-0.00000172,0.0000094,-0.183392948,0.854609599,neg,ns,-0.006231003,0.002753079,-2.263285393,0.024309386,neg,ns,1.614226004,0.0000519,0.0000947,0.54786511,0.584178787,pos,ns,0.922370819,Prpf40b,Prpf40b_Exon,15,99314628,99314677,99314628,99314629,50,+,CGTCATAAGCTTTGACAAGAGGGCTGCCGCACTGGACGCAGGCAACATCA,"Exon (Prpf40b-214/Prpf40b, exon 17 of 24)",15,99295239,99317018,21780,1,Prpf40b-214,19389,Fmnl3-201;Fmnl3-203;Fmnl3-202;Prpf40b-214;Prpf40b-206;Prpf40b-209;Prpf40b-212;Prpf40b-208;Prpf40b-201;Prpf40b-202;Prpf40b-210;Prpf40b-215;Prpf40b-203;Prpf40b-207;Prpf40b-213;Prpf40b-204,Fmnl3;Fmnl3;Fmnl3;Prpf40b;Prpf40b;Prpf40b;Prpf40b;Prpf40b;Prpf40b;Prpf40b;Prpf40b;Prpf40b;Prpf40b;Prpf40b;Prpf40b;Prpf40b,55772;55772;55805;0;0;0;0;0;0;0;0;0;0;0;0;-863,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,10,54614,ENSMUSG00000023007,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12618,cg17948625,0.0000228,0.00000378,6.015096983,5.06E-09,gain,yes,-0.00000118,0.00000643,-0.183351257,0.854642281,neg,ns,0.006495759,0.001882958,3.449763562,0.000638805,pos,ns,3.194631527,-0.000134104,0.0000648,-2.070956855,0.039190099,neg,ns,0.912757363,Ccnl1,Ccnl1_threeUTR,3,65946628,65946677,65946628,65946629,50,+,CGACTGCCACCATGGTGCTTGCTTTTATGGGACCTCTCAAAGGAGCGAGA,3' UTR,3,65946151,65958162,12012,2,Ccnl1-203,11485,Ccnl1-203;Ccnl1-214;Ccnl1-202;Ccnl1-201;Ccnl1-205;Ccnl1-206;Ccnl1-212;Ccnl1-207;Ccnl1-213;Ccnl1-211;Ccnl1-208;Ccnl1-204;Ccnl1-209;Ccnl1-210,Ccnl1;Ccnl1;Ccnl1;Ccnl1;Ccnl1;Ccnl1;Ccnl1;Ccnl1;Ccnl1;Ccnl1;Ccnl1;Ccnl1;Ccnl1;Ccnl1,0;0;0;0;0;0;0;0;0;0;0;5191;6316;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,7,7,56706,ENSMUSG00000027829,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12512,cg08163149,-0.0000182,0.00000712,-2.553671323,0.011137718,loss,ns,0.00000222,0.0000121,0.183328859,0.854659839,pos,ns,0.003131841,0.003542631,0.884043904,0.37735762,pos,ns,0.423246876,-0.000229313,0.000121831,-1.882226294,0.060741826,neg,ns,0.832774131,Klf3,Klf3_Exon,5,64822963,64823012,64823011,64823012,50,+,ATTATCCTGAAGAAATGTCACCCCCCTTAATGAACTCAGTGTCCCCCCCG,"Exon (Klf3-201/Klf3, exon 4 of 6)",5,64803388,64832901,29514,1,Klf3-201,19575,Klf3-201;Klf3-208;Klf3-209;Klf3-202;Klf3-204;Klf3-205;Klf3-203;Klf3-207;Klf3-206,Klf3;Klf3;Klf3;Klf3;Klf3;Klf3;Klf3;Klf3;Klf3,0;0;0;0;10623;10579;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,4,16599,ENSMUSG00000029178,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4192,cg10133742,0.0000142,0.0000148,0.954483874,0.340582451,gain,ns,0.00000462,0.0000252,0.183239004,0.854730278,pos,ns,-0.005863969,0.007379454,-0.794634551,0.427434036,neg,ns,0.369130898,0.000244489,0.000253779,0.963393361,0.336101046,pos,ns,0.73188597,Grm4,Grm4_threeUTR,17,27431464,27431513,27431464,27431465,50,+,CGTTCTGCTCCGGGTGGAAGAGGATGATGTAGACTTTGGGCATGTAGAGC,3' UTR,17,27422387,27503304,80918,2,Grm4-202,71791,Grm4-202;Grm4-201;Grm4-206;Grm4-207;Grm4-205;Grm4-208,Grm4;Grm4;Grm4;Grm4;Grm4;Grm4,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,5,268934,ENSMUSG00000063239,conserved gene and region,17,27431422,27431475,54,*,54,7,0.666666667,1.18125,0.12962963,0.00000224,CpGisland,TRUE,U15,NS
10508,cg03265769,0.00000131,0.00000235,0.557144838,0.577830506,gain,ns,-0.00000073,0.00000399,-0.183235467,0.854733051,neg,ns,0.000760389,0.001167853,0.651099494,0.515464596,pos,ns,0.287801158,-0.000025,0.0000402,-0.623290625,0.533551854,neg,ns,0.932026006,Npas3,Npas3_Intron,12,53926650,53926699,53926698,53926699,50,+,ACGCTGGGAACAGCTTTTGTGATCTCATATTAAATTTTCCCCTGAATCCG,"Intron (Npas3-204/Npas3, intron 4 of 10)",12,53248157,54069532,821376,1,Npas3-204,678493,Npas3-204;Npas3-201;Npas3-203,Npas3;Npas3;Npas3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,83,103,27386,ENSMUSG00000021010,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21026,cg16401170,-0.00000528,0.00000245,-2.159824587,0.031552642,loss,ns,0.000000761,0.00000415,0.183213671,0.854750137,pos,ns,-0.00227104,0.001217061,-1.866003313,0.062985122,neg,ns,1.200762027,0.0000391,0.0000419,0.935027433,0.350501934,pos,ns,0.947042967,Vrk1,Vrk1_Intergenic_downstream,12,106129222,106129271,106129270,106129271,50,+,CTGGTGCCTGTGATCTTTCTGAAGATTCAGGGCACGCGCTCTTCATTACG,Distal Intergenic,12,106030717,106075409,44693,1,Vrk1-204,98505,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,29,37,22367,ENSMUSG00000021115,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24580,cg18577594,-0.0000134,0.00000298,-4.505421783,0.0000094,loss,ns,0.000000928,0.00000506,0.183157787,0.854793947,pos,ns,-0.001879448,0.001483732,-1.266703515,0.206212211,neg,ns,0.685685621,0.0000159,0.000051,0.311019652,0.755994713,pos,ns,0.933147127,Ank2,Ank2_Exon,3,127029273,127029322,127029321,127029322,50,-,CAAGTGGCCCATGAAGGCAGCCACATGTATTGGTGTGAGGCCAGACTGCG,"Exon (Ank2-208/Ank2, exon 14 of 46)",3,126921614,127409059,487446,2,Ank2-208,379737,Ank2-208;Ank2-207;Ank2-218;Ank2-220;Ank2-203;Ank2-214;Ank2-221;Ank2-217,Ank2;Ank2;Ank2;Ank2;Ank2;Ank2;Ank2;Ank2,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,7,109676,ENSMUSG00000032826,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2827,cg22518437,-0.0000563,0.0000129,-4.372192087,0.0000168,loss,ns,-0.000004,0.0000219,-0.183024536,0.854898408,neg,ns,-0.019190912,0.006407567,-2.995038776,0.002965284,neg,ns,2.527933769,0.000582758,0.000220356,2.644622043,0.008594687,pos,ns,0.702602607,Comtd1,Comtd1_Intergenic_upstream,14,21904563,21904612,21904611,21904612,50,-,GTGAAACCCCACTCCTTAGACCTAATCATGAGTTGTAGATTATTCTGTCG,Distal Intergenic,14,21845855,21848977,3123,2,Comtd1-202,-55635,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,13,69156,ENSMUSG00000021773,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15143,cg08134077,-0.00000191,0.00000369,-0.518287637,0.604627315,loss,ns,-0.00000115,0.00000627,-0.183007989,0.854911381,neg,ns,-0.003846357,0.001836952,-2.093880196,0.037082655,neg,ns,1.430829176,0.0000725,0.0000632,1.147808788,0.251932506,pos,ns,0.863081852,Tmem184b,Tmem184b_Exon,15,79365351,79365400,79365399,79365400,50,-,CAAAGAACATCTCCACACAGATGATGAAGTCCTGGTAGCCGGCAGCCACG,"Exon (Tmem184b-201/Tmem184b, exon 8 of 9)",15,79360684,79403569,42886,2,Tmem184b-201,38169,Tmem184b-201;Tmem184b-202;Tmem184b-204;Tmem184b-208;Tmem184b-203;Tmem184b-205,Tmem184b;Tmem184b;Tmem184b;Tmem184b;Tmem184b;Tmem184b,0;0;0;0;4593;31456,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,223693,ENSMUSG00000009035,conserved gene but different region,15,79365291,79365451,161,*,161,10,0.608695652,0.670833333,0.062111801,0.00000521,CpGisland,TRUE,NA,NRS
3106,cg05074697,0.0000112,0.00000484,2.314134816,0.021313848,gain,ns,-0.00000151,0.00000823,-0.182991007,0.854924694,neg,ns,-0.001728451,0.002410731,-0.716982115,0.473924982,neg,ns,0.324290398,0.000117067,0.0000829,1.412060368,0.158935198,pos,ns,0.901534577,Nol4,Nol4_Exon,18,22769835,22769884,22769835,22769836,50,-,CGCCTGCATGAGTCAATGATAGCCTGGATCTTTTCTTTGGGCTGCTTAGA,"Exon (Nol4-202/Nol4, exon 8 of 11)",18,22693181,22850754,157574,2,Nol4-203,80870,Nol4-203;Nol4-202;Nol4-204;Nol4-201;Nol4-208;Nol4-206,Nol4;Nol4;Nol4;Nol4;Nol4;Nol4,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,16,21,319211,ENSMUSG00000041923,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23126,cg17872109,-0.0000144,0.00000443,-3.242030068,0.001316043,loss,ns,-0.00000138,0.00000753,-0.18297851,0.854934491,neg,ns,-0.000029,0.002204856,-0.013174697,0.989496892,neg,ns,0.004585566,-0.0000448,0.0000758,-0.591358783,0.554711008,neg,ns,0.899879291,Rnf220,Rnf220_Intron,4,117315055,117315104,117315103,117315104,50,-,TACATTATCCGTGTAATACACTTGTCTGGCTGGGGCCTCCCGCTGGGGCG,"Intron (Rnf220-201/Rnf220, intron 2 of 14)",4,117271463,117497052,225590,2,Rnf220-201,181948,Rnf220-201;Rnf220-202;Rnf220-207,Rnf220;Rnf220;Rnf220,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,4,117314991,117315152,162,*,162,10,0.5,0.995085995,0.061728395,0.0000055,CpGisland,TRUE,U13,Hc-P
9134,cg01664258,-0.0000173,0.00000444,-3.900971806,0.000117523,loss,ns,-0.00000138,0.00000755,-0.182851351,0.855034181,neg,ns,-0.006324076,0.002210769,-2.860576937,0.004515897,neg,ns,2.345255981,0.000136641,0.000076,1.797245271,0.073269862,pos,ns,0.890737721,Ptpn5,Ptpn5_threeUTR,7,47077792,47077841,47077840,47077841,50,+,GGTTAGTTTTGCTCAAAATGCTCCGTTTATTGCTCTATTCAATGACCACG,3' UTR,7,47077795,47133684,55890,2,Ptpn5-202,55843,LOC102637012-201;Ptpn5-202;Ptpn5-209;Ptpn5-201;Ptpn5-205;Ptpn5-207;Ptpn5-203,LOC102637012;Ptpn5;Ptpn5;Ptpn5;Ptpn5;Ptpn5;Ptpn5,-3105;0;0;0;13495;10727;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,4,19259,ENSMUSG00000030854,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25179,cg01874861,-0.0000105,0.00000354,-2.960825641,0.00330504,loss,ns,-0.0000011,0.00000601,-0.182849888,0.855035328,neg,ns,-0.002243863,0.001762016,-1.273463192,0.203807767,neg,ns,0.690779269,0.0000385,0.0000606,0.634686335,0.526101131,pos,ns,0.92367981,Gm10051,Gm10051_Intergenic_downstream,5,133479365,133479414,133479365,133479366,50,-,CGCCAATCTGAAATGGATTTCAGAGGAAGGGATCACAATGTTAGGAGAAG,Distal Intergenic,5,133475123,133475536,414,1,Gm10051-201,4291,Gm10051-201,Gm10051,4242,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,3,100039731,ENSMUSG00000058905,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3350,cg18654962,-0.0000356,0.00000672,-5.297309315,0.000000223,loss,yes,0.00000209,0.0000114,0.182819931,0.855058814,pos,ns,0.007719345,0.003345311,2.30751186,0.021684754,pos,ns,1.663845496,-0.00026893,0.000115045,-2.337603779,0.020043837,neg,ns,0.566602346,Srrm2,Srrm2_Exon,17,23806986,23807035,23806986,23806987,50,+,CGCCCCGGGGCAGCGGCACCAACGGCTACGTCCAGCGCAACCTGTCCCTG,"Exon (Srrm2-206/Srrm2, exon 3 of 5)",17,23790662,23808518,17857,1,Srrm2-206,16324,Srrm2-206;Srrm2-210;Srrm2-201;Srrm2-212;Srrm2-211;Srrm2-208;Srrm2-203;Srrm2-207,Srrm2;Srrm2;Srrm2;Srrm2;Srrm2;Srrm2;Srrm2;Srrm2,0;0;0;0;0;0;0;-4865,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,13,75956,ENSMUSG00000039218,conserved gene and region,17,23806919,23807174,256,*,256,25,0.6953125,0.810536981,0.09765625,4.40E-19,CpGisland,TRUE,U12,Tr-I
10855,cg26357520,-0.0000121,0.00000747,-1.622137143,0.105790525,loss,ns,0.00000232,0.0000127,0.182653885,0.855188993,pos,ns,-0.007144522,0.00371994,-1.92060131,0.055699121,neg,ns,1.254151657,0.00020932,0.000127928,1.636229612,0.10280635,pos,ns,0.838311671,Neurod6,Neurod6_Intergenic_downstream,6,55646901,55646950,55646949,55646950,50,+,CAAAATGACTTAATTCTTGTGTCAAAGATTAGTTATTAGATATTACCCCG,Distal Intergenic,6,55677822,55681263,3442,2,Neurod6-201,34313,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,16,11922,ENSMUSG00000037984,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7734,cg01846532,0.0000126,0.00000566,2.229648866,0.026486802,gain,ns,0.00000176,0.00000962,0.182623326,0.855212952,pos,ns,0.004620268,0.002817817,1.639662362,0.102089727,pos,ns,0.991017957,-0.000352568,0.0000969,-3.638300679,0.000321362,neg,ns,0.864145787,Arhgap15,Arhgap15_Intron,2,44017425,44017474,44017425,44017426,50,+,CGTTACATGGCTGGTTGCAGCCTCAGATTAATGCGAAGACCCTGGCGATT,"Intron (Arhgap15-203/Arhgap15, intron 6 of 14)",2,43748824,44395953,647130,1,Arhgap15-203,268601,Arhgap15-203;Arhgap15-202;Arhgap15-201,Arhgap15;Arhgap15;Arhgap15,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,72,78,76117,ENSMUSG00000049744,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10270,cg00032807,0.0000129,0.0000172,0.748787826,0.454552853,gain,ns,0.00000532,0.0000292,0.182495043,0.855313529,pos,ns,-0.00022293,0.008543803,-0.026092542,0.979200314,neg,ns,0.009128456,0.0001058,0.000293821,0.360084119,0.719029428,pos,ns,0.263193588,Evx1,Evx1_Intergenic_downstream,6,52319403,52319452,52319451,52319452,50,+,GGAATTACTCATTACTTCATAATGAAATTTCCCTTTTGCCAAGGTTTGCG,Distal Intergenic,6,52313552,52316644,3093,1,Evx1-202,5851,Evx1-201;Evx1-202,Evx1;Evx1,0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,19,14028,ENSMUSG00000005503,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
23983,cg03898602,0.00000426,0.00000164,2.590503368,0.010036403,gain,ns,0.00000051,0.00000279,0.182462154,0.855339315,pos,ns,0.000609809,0.00081854,0.744996102,0.456838504,pos,ns,0.340237299,-0.0000304,0.0000281,-1.081080114,0.280501767,neg,ns,0.027978056,Galnt2l,Galnt2l_Exon,8,121730866,121730915,121730914,121730915,50,+,GTGTACAAGGGCGAGTGGACGCACGGATTCAAGGGGCGCTACGGGGTGCG,"Exon (Jph3-201/Jph3, exon 1 of 5)",8,119910841,124345722,4434882,1,Galnt2l-201,1820025,Galnt2l-201;Jph3-203;Jph3-201;Jph3-202,Galnt2l;Jph3;Jph3;Jph3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,28,,NA,mapped to different genes,8,121730591,121731098,508,*,508,45,0.645669291,0.890499007,0.088582677,5.95E-32,CpGisland,TRUE,U13,Hc-P
7206,cg25248596,-0.0000361,0.0000123,-2.942414757,0.003502276,loss,ns,0.0000038,0.0000208,0.182461196,0.855340066,pos,ns,-0.006135229,0.006106848,-1.004647497,0.315850153,neg,ns,0.500518909,0.000105409,0.000210014,0.501915848,0.616083008,pos,ns,0.722919354,Gria3,Gria3_Exon,X,41654231,41654280,41654279,41654280,50,+,ACCCCTAAAGGCTCAGCATTAAGGTGGGTGGAATAATATAACAATATCCG,"Exon (Gria3-202/Gria3, exon 14 of 17)",20,41401128,41676585,275458,1,Gria3-202,253103,Gria3-202;Gria3-201;Gria3-208;Gria3-206;Gria3-209,Gria3;Gria3;Gria3;Gria3;Gria3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,26,53623,ENSMUSG00000001986,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15154,cg17745360,0.0000233,0.00000394,5.925878795,8.26E-09,gain,yes,-0.00000122,0.00000669,-0.182378825,0.855404649,neg,ns,0.002260339,0.001959803,1.153350422,0.249655062,pos,ns,0.602659623,-0.0000491,0.0000674,-0.728272267,0.466996688,neg,ns,0.051186092,Cerkl,Cerkl_Promoter,2,79456987,79457036,79456987,79456988,50,-,CGCCAGTTAGAGACTCCGCGGACCTGTTTTTACCCGCAGGAGAGATTAAC,Promoter (<=1kb),2,79338569,79456785,118217,2,Cerkl-210,-251,Cerkl-210;Neurod1-201,Cerkl;Neurod1,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,13,15,228094,ENSMUSG00000075256,mapped to different genes,2,79456843,79457022,180,*,180,14,0.622222222,0.830039526,0.077777778,1.72E-09,CpGisland,TRUE,NA,NRS
15838,cg24787670,-0.00000904,0.00000555,-1.62776326,0.10459098,loss,ns,-0.00000172,0.00000944,-0.182378192,0.855405146,neg,ns,-0.000478808,0.002764756,-0.173182871,0.862620709,neg,ns,0.06418012,-0.0000888,0.0000951,-0.934309729,0.350871328,neg,ns,0.828855755,Scube1,Scube1_Exon,15,83651672,83651721,83651720,83651721,50,-,TTCACCCGCTTGTCCACATCAGCTACTGACGTGGCATTGAACTGAGAGCG,"Exon (Scube1-201/Scube1, exon 7 of 23)",15,83604999,83725021,120023,2,Scube1-204,73300,Scube1-204;Scube1-202;Scube1-201;Scube1-203;Scube1-205;Scube1-206,Scube1;Scube1;Scube1;Scube1;Scube1;Scube1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,8,64706,ENSMUSG00000016763,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13774,cg17834752,-0.0000256,0.0000131,-1.955886299,0.051376446,loss,ns,0.00000405,0.0000223,0.182129932,0.855599798,pos,ns,-0.000790049,0.00651974,-0.121177924,0.903628616,neg,ns,0.044010025,-0.0000218,0.000224213,-0.097363242,0.922500853,neg,ns,0.220440398,Kcnk9,Kcnk9_fiveUTR,15,72546235,72546284,72546283,72546284,50,-,GGTGCAGACGATGAGGGACAGAGTCCGCACGTTCTGCCTCTTCATGGCCG,Promoter (<=1kb),15,72501089,72546340,45252,2,Kcnk9-201,56,Kcnk9-201,Kcnk9,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,1,223604,ENSMUSG00000036760,conserved gene and region,15,72546111,72547179,1069,*,1069,114,0.670720299,0.953031156,0.106641721,8.87E-90,CpGisland,TRUE,U13,Hc-P
24483,cg15274505,-0.0000114,0.00000387,-2.945598333,0.003467418,loss,ns,-0.0000012,0.00000657,-0.182082068,0.855637328,neg,ns,-0.00243749,0.001925654,-1.265798441,0.206535715,neg,ns,0.685004839,-0.0000769,0.0000662,-1.160675678,0.246666841,neg,ns,0.927217805,Atxn2l,Atxn2l_Exon,7,126492894,126492943,126492942,126492943,50,+,GGGGGGCCCCCCATGACTCTGGGGTGGGTGCAGCAGCATCACCTGGGGCG,"Exon (Atxn2l-201/Atxn2l, exon 22 of 23)",7,126491708,126503437,11730,2,Atxn2l-201,10494,Atxn2l-201;Atxn2l-203;Atxn2l-206;Atxn2l-205;Atxn2l-202;Tufm-201;Tufm-202;Tufm-203;Tufm-204;Tufm-205;Tufm-206,Atxn2l;Atxn2l;Atxn2l;Atxn2l;Atxn2l;Tufm;Tufm;Tufm;Tufm;Tufm;Tufm,0;0;0;0;0;5533;5516;5265;4280;4208;3523,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,13,233871,ENSMUSG00000032637,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3108,cg12013003,0.0000328,0.0000132,2.47801211,0.013743972,gain,ns,0.00000409,0.0000225,0.18207043,0.855646453,pos,ns,0.022599342,0.006578612,3.435275017,0.000672618,pos,ns,3.17223163,-0.000223683,0.000226238,-0.988708196,0.323577001,neg,ns,0.300115871,Lrmda,Lrmda_Intron,14,22783276,22783325,22783276,22783277,50,-,CGTTTCTGTTGACAAGAAATTTATGTGGTAATAATTTGCTCGAAATAGAT,"Intron (Lrmda-201/Lrmda, intron 5 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,763564,Lrmda-201;Lrmda-204;Lrmda-206,Lrmda;Lrmda;Lrmda,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10172,cg06791297,0.0000859,0.00000764,11.23747999,8.30E-25,gain,yes,-0.00000236,0.000013,-0.181969363,0.8557257,neg,ns,0.015308944,0.003803545,4.024915112,0.0000717,pos,ns,4.144493787,-0.00023766,0.000130804,-1.816922899,0.070194432,neg,ns,0.131106389,Gm28308,Gm28308_fiveUTR,6,52208576,52208625,52208576,52208577,50,-,CGCTGGGAAGGCTCCCGGGGAAAGTGGGATTCACAAAATAGGAACTCATT,5' UTR,6,52163359,52213339,49981,2,Gm28308-201,4714,Gm28308-201;Hoxa3-201;Hoxa3-203;Hoxa5-201;Hoxa6-201,Gm28308;Hoxa3;Hoxa3;Hoxa5;Hoxa6,0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,21,103,,NA,mapped to different genes,6,52208481,52208577,97,*,97,10,0.701030928,0.857648099,0.103092784,4.63E-08,CpGisland,TRUE,U3,Pr-B
15060,cg12529140,-0.000000357,0.00000241,-0.148006986,0.882433477,loss,ns,-0.000000744,0.00000409,-0.181820429,0.855842482,neg,ns,0.001126534,0.00119914,0.939451636,0.348230322,pos,ns,0.458133415,-0.0000366,0.0000412,-0.887001081,0.375765934,neg,ns,0.955234404,Nlk,Nlk_Exon,11,78696177,78696226,78696225,78696226,50,-,GTGGTGGTGGTGACCTGCTGCTGCTGCAGATGTACCGCCATTGTAAGCCG,"Exon (Nlk-201/Nlk, exon 1 of 11)",11,78567168,78697373,130206,2,Nlk-201,1147,Nlk-201;Nlk-202,Nlk;Nlk,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,6,18099,ENSMUSG00000017376,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3440,cg27615436,0.0000005,0.000000604,0.828422493,0.408068614,gain,ns,-0.000000186,0.00000103,-0.1817446,0.855901942,neg,ns,0.000108192,0.000300388,0.360175263,0.718961341,pos,ns,0.143294461,-0.00000404,0.0000103,-0.391495893,0.695699689,neg,ns,0.016748026,Bcl11a,Bcl11a_Intron,11,24079683,24079732,24079683,24079684,50,+,CGTGTCTGAATGTTTACAAGCACCGCGTGTGCGGGAGCCTCCTGCCAACA,"Intron (Bcl11a-201/Bcl11a, intron 1 of 4)",11,24078056,24173194,95139,1,Bcl11a-201,1627,A830031A19Rik-201;Bcl11a-201;Bcl11a-203;Bcl11a-205;Bcl11a-202;Bcl11a-204,A830031A19Rik;Bcl11a;Bcl11a;Bcl11a;Bcl11a;Bcl11a,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,98,14025,ENSMUSG00000000861,conserved gene and region,11,24079683,24079984,302,*,302,31,0.682119205,0.896743295,0.102649007,2.90E-24,CpGisland,TRUE,U1,Pr-A
14014,cg11813165,-0.00000601,0.00000247,-2.437151187,0.015365643,loss,ns,-0.000000761,0.00000419,-0.181700687,0.855936376,neg,ns,-0.00108856,0.001227121,-0.887084615,0.375721032,neg,ns,0.425134493,-0.0000168,0.0000422,-0.397674303,0.691143977,neg,ns,0.948009517,Memo1,Memo1_Exon,17,74225456,74225505,74225504,74225505,50,+,CCACAAAGAGATTACTAGGATCCGCTAGATATTTACTGAAGAGTTTTCCG,"Exon (Memo1-210/Memo1, exon 6 of 9)",17,74199036,74294863,95828,2,Memo1-210,69358,Memo1-210;Memo1-208;Memo1-201;Memo1-204;Memo1-206;Memo1-203;Memo1-209,Memo1;Memo1;Memo1;Memo1;Memo1;Memo1;Memo1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,76890,ENSMUSG00000058704,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6356,cg00458823,-0.0000156,0.00000673,-2.323902017,0.020776987,loss,ns,-0.00000208,0.0000114,-0.181676919,0.855955014,neg,ns,-0.001577662,0.003350564,-0.470864522,0.638068637,neg,ns,0.195132602,0.000194284,0.000115226,1.686117529,0.092779289,pos,ns,0.62111375,Pknox2,Pknox2_Intron,9,36975833,36975882,36975881,36975882,50,-,CAATTTAATTCCCCCTGATAGCGGCAATTGTCCATTAGATCTTCCTACCG,"Intron (Pknox2-207/Pknox2, intron 1 of 10)",9,36890982,37083309,192328,2,Pknox2-207,107427,Pknox2-207;Pknox2-201;Pknox2-202;Pknox2-203;Pknox2-206;Pknox2-204;Pknox2-205;Pknox2-208;Pknox2-210;Pknox2-209;Pknox2-212,Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,47,208076,ENSMUSG00000035934,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19511,cg09449128,-0.00000659,0.00000254,-2.591143469,0.010018157,loss,ns,0.000000785,0.00000432,0.181671919,0.855958935,pos,ns,-0.002840121,0.001266073,-2.24325241,0.0255866,neg,ns,1.591987427,0.0000821,0.0000435,1.885214762,0.060335927,pos,ns,0.951637652,Gm12683,Gm12683_Intergenic_downstream,4,99502577,99502626,99502625,99502626,50,-,CCTTTATTTTAATTCAAAAAACAAAAGCCAAATAGCAAAACTTATGTACG,Distal Intergenic,4,99520052,99520466,415,2,Gm12683-201,17889,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,3,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17437,cg17014614,-0.00000407,0.00000305,-1.332193097,0.183775258,loss,ns,-0.000000942,0.00000519,-0.181627129,0.855994057,neg,ns,-0.000743843,0.001519271,-0.489605303,0.624759495,neg,ns,0.204287135,0.0000984,0.0000522,1.883199005,0.060609462,pos,ns,0.925982906,Tox3,Tox3_Intron,8,90273272,90273321,90273272,90273273,50,+,CGGTGAATTATCACAGCTGGAATTAAATTGTCTCTGAACAGCTGCTGGCA,"Intron (Tox3-201/Tox3, intron 2 of 6)",8,90247040,90348343,101304,2,Tox3-201,75022,Tox3-201;Tox3-203;Tox3-202,Tox3;Tox3;Tox3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,19,244579,ENSMUSG00000043668,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7447,cg02536838,0.0000859,0.0000193,4.457397033,0.0000116,gain,ns,0.00000594,0.0000327,0.181609572,0.856007825,pos,ns,-0.014907248,0.009588419,-1.554713809,0.121034533,neg,ns,0.917090702,0.000324642,0.000329745,0.984524065,0.325625671,pos,ns,0.363557778,Angpt1,Angpt1_fiveUTR,15,42676968,42677017,42677016,42677017,50,-,CTTACAAATTGGCTAGATGCGCATGACCTCGATCATGTATGGCCCTCCCG,Promoter (<=1kb),15,42424723,42676977,252255,2,Angpt1-201,0,Angpt1-201;Angpt1-202,Angpt1;Angpt1,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,3,11600,ENSMUSG00000022309,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
26977,cg15144104,-0.00000026,0.00000083,-0.313441073,0.754156374,loss,ns,-0.000000256,0.00000141,-0.181525394,0.856073834,neg,ns,0.000556864,0.000413101,1.348007584,0.178640127,pos,ns,0.74802098,-0.00000953,0.0000142,-0.670610151,0.502968211,neg,ns,0.978788244,Acbd6,Acbd6_Intron,1,155655152,155655201,155655152,155655153,50,-,CGGATCAAACTGCAGATTGTTTAAGAGCACAGTGCTGTCCTCATGTCAGG,"Intron (Acbd6-201/Acbd6, intron 6 of 7)",1,155558122,155691330,133209,1,Acbd6-201,97030,Acbd6-201;Acbd6-206,Acbd6;Acbd6,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,7,72482,ENSMUSG00000033701,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26801,cg21841644,0.0000518,0.00000368,14.06240034,4.40E-35,gain,yes,0.00000114,0.00000626,0.181502802,0.856091551,pos,ns,0.005209917,0.001833878,2.840928921,0.004796028,pos,ns,2.319118286,-0.0000596,0.0000631,-0.94439926,0.345701124,neg,ns,0.065431186,Sox12,Sox12_threeUTR,2,152396692,152396741,152396740,152396741,50,-,ATACCTGATTCCTGTATGTAAACAGCTGGTTTGGGGGCGTGCGCGCCCCG,3' UTR,2,152393611,152398063,4453,2,Sox12-202,1322,Sox12-202;Sox12-201,Sox12;Sox12,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,7,7,20667,ENSMUSG00000051817,mapped to different genes,2,152396729,152396923,195,*,195,21,0.666666667,0.980603448,0.107692308,4.93E-17,CpGisland,TRUE,U1,Pr-A
5001,cg10036193,-0.000103424,0.0000123,-8.401134465,1.61E-15,loss,yes,-0.00000379,0.0000209,-0.181281122,0.85626539,neg,ns,0.021661869,0.006127184,3.535371176,0.000469322,pos,ns,3.32852874,-0.000420918,0.000210713,-1.997587527,0.046634992,neg,ns,0.813728363,Dlg1,Dlg1_Exon,16,31754946,31754995,31754994,31754995,50,+,AGATAGTTGCATTTTTCACTCGAAGACACAGCTTTATTGACTGCATCTCG,"Exon (Dlg1-204/Dlg1, exon 1 of 23)",16,31663443,31875129,211687,1,Dlg1-206,91503,Dlg1-206;Dlg1-205;Dlg1-203;Dlg1-209;Dlg1-202;Dlg1-201;Dlg1-215;Dlg1-204,Dlg1;Dlg1;Dlg1;Dlg1;Dlg1;Dlg1;Dlg1;Dlg1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,8,13383,ENSMUSG00000022770,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8132,cg14783231,-0.0000384,0.0000116,-3.296282052,0.001093453,loss,ns,-0.00000359,0.0000198,-0.181245177,0.856293579,neg,ns,-0.016077624,0.005797297,-2.773296634,0.005885287,neg,ns,2.230232357,0.000257843,0.000199369,1.293295876,0.196871642,pos,ns,0.834033227,Pax2,Pax2_Intron,19,44772577,44772626,44772577,44772578,50,-,CGAGTACTCTGGGCCTTTGTTTATGTGGAAAATTAAAATGCAAATACAAT,"Intron (Pax2-203/Pax2, intron 3 of 9)",19,44756045,44837851,81807,1,Pax2-203,16532,Pax2-203;Pax2-201;Pax2-202,Pax2;Pax2;Pax2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,35,166,18504,ENSMUSG00000004231,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22532,cg06849858,-0.00000908,0.00000668,-1.35989659,0.174850834,loss,ns,-0.00000206,0.0000113,-0.181166641,0.856355168,neg,ns,-0.007823492,0.003324929,-2.35298032,0.019248181,neg,ns,1.715610296,0.000164647,0.000114344,1.439922225,0.150898488,pos,ns,0.895464862,Rps4l-ps,Rps4l-ps_Intron,7,114963435,114963484,114963483,114963484,50,+,CTCATCTAAATGTCAAACAACTTAGCTTAAATAAAGCCCAGCATTCTTCG,"Intron (A730082K24Rik-203/A730082K24Rik-203, intron 2 of 3)",7,114926959,114927726,768,2,Rps4l-ps-201,-35709,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,19,627967,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6527,cg26045379,-0.00000107,0.000000912,-1.175319209,0.240768943,loss,ns,0.000000281,0.00000155,0.18110684,0.856402066,pos,ns,0.000105495,0.000453939,0.232399948,0.816380741,pos,ns,0.088107249,0.00000105,0.0000156,0.067444796,0.946271087,pos,ns,0.969458557,Strbp,Strbp_Exon,2,37626480,37626529,37626528,37626529,50,-,ACCCATCCTTTCAATGGTGCCCATGTGGGGACTCTGTTGCACAAATCACG,"Exon (Strbp-207/Strbp, exon 6 of 19)",2,37483228,37647219,163992,2,Strbp-207,20690,Strbp-207;Strbp-201;Strbp-202,Strbp;Strbp;Strbp,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,7,20744,ENSMUSG00000026915,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7547,cg05375765,0.00000188,0.00000743,0.252455361,0.800856419,gain,ns,-0.00000229,0.0000126,-0.181073502,0.85642821,neg,ns,0.008562952,0.003699565,2.314583483,0.021288923,pos,ns,1.671846312,-0.000380866,0.000127228,-2.993578148,0.002979108,neg,ns,0.7419928,Sobp,Sobp_Intron,10,43106335,43106384,43106383,43106384,50,+,TCCTAAGTGCTGATGGGCAATTGTGTTAAATGTAGCTTGGAATCTGCACG,"Intron (Sobp-201/Sobp, intron 4 of 6)",10,43002500,43174530,172031,2,Sobp-201,68146,Sobp-201,Sobp,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,19,109205,ENSMUSG00000038248,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2893,cg16778775,0.0000151,0.00000213,7.076205771,9.92E-12,gain,yes,0.000000654,0.00000362,0.180843846,0.856608319,pos,ns,0.00087561,0.001060273,0.825834228,0.409533232,pos,ns,0.387710852,0.0000254,0.0000365,0.697326693,0.486120997,pos,ns,0.94958104,Ehbp1,Ehbp1_Intron,11,22034580,22034629,22034628,22034629,50,-,GTTCATACCCAACCCCCTGTTGTACTCTTTTAAGTTGAGAATATTCAACG,"Intron (Ehbp1-201/Ehbp1, intron 20 of 23)",11,22005828,22285838,280011,2,Ehbp1-201,251209,Ehbp1-201;Ehbp1-202;Ehbp1-207,Ehbp1;Ehbp1;Ehbp1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,34,45,216565,ENSMUSG00000042302,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15986,cg18963985,-0.0000025,0.00000153,-1.63059615,0.103991101,loss,ns,-0.000000471,0.0000026,-0.180828437,0.856620404,neg,ns,0.001278817,0.000762603,1.676910565,0.094567995,pos,ns,1.024255818,-0.0000414,0.0000262,-1.577643655,0.115667359,neg,ns,0.056387486,Tshz1,Tshz1_fiveUTR,18,84086433,84086482,84086481,84086482,50,-,TTCGGATCGCAGAGCTTTCAGACAGTCTCAACTGATAGACAGACACATCG,Promoter (<=1kb),18,84012082,84086451,74370,2,Tshz1-202,0,Tshz1-201;Tshz1-202;Tshz1-203;Tshz1-204;Zadh2-201;Zadh2-202,Tshz1;Tshz1;Tshz1;Tshz1;Zadh2;Zadh2,0;0;0;0;0;-2189,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,18,110796,ENSMUSG00000046982,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
20306,cg14162013,0.0000205,0.0000042,4.89321451,0.0000016,gain,yes,-0.00000129,0.00000713,-0.180771573,0.856665001,neg,ns,0.004297562,0.00208945,2.056790644,0.0405429,pos,ns,1.392085188,-0.000109942,0.0000719,-1.53003504,0.127027816,neg,ns,0.062310721,Hoxc5,Hoxc5_threeUTR,15,102992909,102992958,102992909,102992910,50,+,CGTTTTATGGTAGCAGATAAATTGAGAAGTTTACGACTGTCATTTGCTTT,3' UTR,15,102967443,103015676,48234,1,Hoxc5-202,25466,Hoxc5-202;Hoxc8-201;Hoxc8-202,Hoxc5;Hoxc8;Hoxc8,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,134,15424,ENSMUSG00000022485,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
10131,cg06188746,0.0000869,0.0000115,7.54333391,5.12E-13,gain,yes,-0.00000354,0.0000196,-0.180710932,0.856712561,neg,ns,0.018863819,0.005730955,3.291566241,0.001111316,pos,ns,2.954162547,-0.000207146,0.000197087,-1.051035623,0.294060849,neg,ns,0.461176855,Gm28308,Gm28308_fiveUTR,6,52200933,52200982,52200933,52200934,50,+,CGTAGCCTGCAAAAGAGTCAAATGGAGTCCAGCGTTAGTGAGATTATATG,5' UTR,6,52163359,52213339,49981,2,Gm28308-201,12357,Gm28308-201;Hoxa3-201;Hoxa3-203;Hoxa5-201,Gm28308;Hoxa3;Hoxa3;Hoxa5,0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,21,103,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
8103,cg13399673,-0.000000126,0.00000374,-0.033617717,0.973203629,loss,ns,0.00000115,0.00000636,0.180416844,0.856943217,pos,ns,0.004373392,0.001863521,2.346843802,0.019562326,pos,ns,1.708579506,-0.000225301,0.0000641,-3.515587127,0.000504254,neg,ns,0.9220126,Ebf1,Ebf1_Intron,11,44745875,44745924,44745875,44745876,50,-,CGATTGATCATGACAGCGCCTTAAAGAGCCATTATTGCCTATCAGGGAGA,"Intron (Ebf1-203/Ebf1, intron 6 of 15)",11,44617317,45004995,387679,1,Ebf1-203,128558,Ebf1-203;Ebf1-202;Ebf1-201,Ebf1;Ebf1;Ebf1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,80,13591,ENSMUSG00000057098,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2284,cg04723117,-0.0000085,0.00000235,-3.612392574,0.000353795,loss,ns,-0.000000721,0.000004,-0.180330735,0.857010755,neg,ns,0.003470555,0.001171702,2.9619775,0.003293044,pos,ns,2.482402404,-0.00013739,0.0000403,-3.409634403,0.000736587,neg,ns,0.941502916,Meis1,Meis1_Exon,11,18941684,18941733,18941732,18941733,50,+,CTCATGATATTTGTGGCTACTTTGGGAAAGATGCCACGCTTTTTGTGACG,"Exon (Meis1-206/Meis1, exon 8 of 10)",11,18879817,19018985,139169,2,Meis1-206,77252,Meis1-206;Meis1-202;Meis1-209;Meis1-201;Meis1-203;Meis1-208;Meis1-207,Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,21,88,17268,ENSMUSG00000020160,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1902,cg12035862,0.00000965,0.0000045,2.143991435,0.032811117,gain,ns,-0.00000138,0.00000765,-0.180318071,0.857020688,neg,ns,-0.000359222,0.002240029,-0.160364977,0.872698023,neg,ns,0.059136008,0.00000991,0.000077,0.128706767,0.897673141,pos,ns,0.930988917,Meis3,Meis3_Exon,7,16178956,16179005,16178956,16178957,50,-,CGACCTGTGCGACAACTTCTGTCACCGCTACATCACCTGCCTCAAGGGAA,"Exon (Meis3-205/Meis3, exon 6 of 13)",7,16175275,16186504,11230,1,Meis3-205,3681,Meis3-203;Meis3-208;Meis3-205;Meis3-202;Meis3-201;Meis3-207;Meis3-209;Meis3-204,Meis3;Meis3;Meis3;Meis3;Meis3;Meis3;Meis3;Meis3,3866;3817;0;0;0;0;1210;-37,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,Exon,3,3,17537,ENSMUSG00000041420,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12327,cg16699226,-0.0000384,0.00000734,-5.224604818,0.000000321,loss,yes,0.00000225,0.0000125,0.180290903,0.857041998,pos,ns,-0.005359086,0.003655669,-1.465965938,0.143671147,neg,ns,0.842630441,0.000198344,0.000125718,1.577686826,0.115657434,pos,ns,0.840084125,Fign,Fign_Intergenic_downstream,2,63963421,63963470,63963421,63963422,50,-,CGGAGGTTATGATGCAAATGAGGAGGAATTAAAAGTGGCCAGGGGTTTGT,Distal Intergenic,2,63980447,64097988,117542,2,Fign-202,134567,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,28,84,60344,ENSMUSG00000075324,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23818,cg11102343,0.0000148,0.0000135,1.098261345,0.272942656,gain,ns,-0.00000414,0.000023,-0.180140838,0.857159702,neg,ns,0.009965447,0.006726181,1.481590751,0.13946495,pos,ns,0.855534925,-0.000406294,0.000231313,-1.756468782,0.079995749,neg,ns,0.550322969,Sdsl,Sdsl_Intergenic_downstream,5,120454632,120454681,120454680,120454681,50,+,TGCCTGTGGCGCTCCCAGGAAACACCTTTTTACATAAGATATTGCCCACG,Distal Intergenic,5,120460688,120467360,6673,2,Sdsl-203,12679,Sdsl-202;Sdsl-201,Sdsl;Sdsl,18082;18129,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,257635,ENSMUSG00000029596,conserved gene and region,5,120454521,120454684,164,*,164,10,0.506097561,0.963572268,0.06097561,0.00000612,CpGisland,TRUE,U13,Hc-P
17815,cg14765612,-0.0000212,0.00000294,-7.195001147,4.73E-12,loss,yes,-0.000000901,0.000005,-0.18012821,0.857169607,neg,ns,-0.001547027,0.001465687,-1.055496711,0.292020105,neg,ns,0.534587247,0.00000745,0.0000504,0.147848265,0.882558635,pos,ns,0.957412265,Atp5o,Atp5o_Exon,16,91858231,91858280,91858231,91858232,50,+,CGAGAGTTCTGAGCAAGGAGATTTAACCTTTCAGCAAGGGGATGTGATTT,"Exon (Itsn1-207/Itsn1, exon 24 of 29)",16,91684398,91926982,242585,2,Atp5o-207,68702,Atp5o-207;Itsn1-207;Itsn1-206;Itsn1-202;Itsn1-208;Itsn1-201;Itsn1-205;Itsn1-204;Itsn1-224;Itsn1-221;Itsn1-211;Itsn1-217,Atp5o;Itsn1;Itsn1;Itsn1;Itsn1;Itsn1;Itsn1;Itsn1;Itsn1;Itsn1;Itsn1;Itsn1,0;0;0;0;0;0;0;0;18443;15603;0;-3746,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,28080,ENSMUSG00000022956,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13910,cg20318153,0.00000369,0.00000681,0.541687574,0.588422856,gain,ns,0.00000208,0.0000116,0.180078323,0.857208737,pos,ns,-0.002985105,0.003390534,-0.880423165,0.379312143,neg,ns,0.421003254,-0.000098,0.0001166,-0.840797537,0.401109421,neg,ns,0.75949145,Trpv3,Trpv3_Exon,11,73291596,73291645,73291644,73291645,50,-,GTCTGTCTTCTTGTACTTGTTTGCCTACAAAGAGTACCTCGCCTGCCTCG,"Exon (Trpv3-201/Trpv3, exon 13 of 18)",11,73267388,73300363,32976,1,Trpv3-201,24208,Trpv3-201,Trpv3,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,246788,ENSMUSG00000043029,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9642,cg14953793,-0.00000145,0.000000927,-1.568311682,0.117828552,loss,ns,0.000000284,0.00000158,0.18003631,0.857241692,pos,ns,0.000187258,0.000461452,0.405801525,0.685168386,pos,ns,0.164202684,-0.00000866,0.0000159,-0.545774407,0.585613531,neg,ns,0.973880492,Rnf20,Rnf20_Exon,4,49655912,49655961,49655912,49655913,50,+,CGCAAATGTCCCAAGTGTAATGCTGCTTTTGGTGCCAATGATTTTCATCG,"Exon (Rnf20-210/Rnf20, exon 20 of 20)",4,49632060,49656886,24827,1,Rnf20-210,23852,Rnf20-210;Rnf20-201;Rnf20-203;Rnf20-205,Rnf20;Rnf20;Rnf20;Rnf20,0;0;5649;4944,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,109331,ENSMUSG00000028309,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13622,cg01272490,0.0000102,0.00000757,1.344722865,0.179697787,gain,ns,0.00000231,0.0000129,0.180022532,0.857252498,pos,ns,-0.001266017,0.003766724,-0.336105604,0.737018614,neg,ns,0.132521544,-0.0000252,0.000129537,-0.194397997,0.845991589,neg,ns,0.158162458,Dlx1,Dlx1_Intergenic_downstream,2,71537914,71537963,71537914,71537915,50,-,CGGCTATATAGCCTCTGTCTTTATAGCTGATGAAAAAAATTGCAGATTAT,Distal Intergenic,2,71530780,71532689,1910,1,Dlx1-206,7183,Dlx1-201;Dlx1-203,Dlx1;Dlx1,0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,36,13390,ENSMUSG00000041911,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
3750,cg13492190,0.0000159,0.00000458,3.471108659,0.000591875,gain,ns,-0.0000014,0.00000779,-0.18002063,0.857253991,neg,ns,-0.00522954,0.002281636,-2.292012789,0.022574889,neg,ns,1.646374379,0.000190631,0.0000785,2.429495393,0.015687645,pos,ns,0.875049005,Baiap3,Baiap3_Exon,17,25252079,25252128,25252079,25252080,50,-,CGGGCACACCTGCACCTGCCTGAGCACGCTGCTCTTAATGTCCAGCAAGG,"Exon (Baiap3-202/Baiap3, exon 2 of 34)",17,25242659,25256364,13706,2,Baiap3-202,4236,Baiap3-202;Baiap3-206;Baiap3-204;Baiap3-201;Baiap3-207;Baiap3-209,Baiap3;Baiap3;Baiap3;Baiap3;Baiap3;Baiap3,0;0;0;0;-3952;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,545192,ENSMUSG00000047507,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8172,cg19341494,-0.00000245,0.00000112,-2.184167714,0.029698959,loss,ns,0.000000343,0.00000191,0.179974796,0.857289942,pos,ns,0.0000682,0.000558581,0.122149418,0.90285983,pos,ns,0.044379669,-0.0000238,0.0000192,-1.237766469,0.216739303,neg,ns,0.976788447,Pax2,Pax2_Intron,19,44817683,44817732,44817683,44817684,50,-,CGAAAGAGCAGGAAATCAGTTTTAATTTAACGTAATATTAATCAGAGCAA,"Intron (Pax2-203/Pax2, intron 6 of 9)",19,44756045,44837851,81807,1,Pax2-203,61638,Pax2-203;Pax2-201;Pax2-202,Pax2;Pax2;Pax2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,35,166,18504,ENSMUSG00000004231,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7145,cg21431865,-0.0000635,0.0000149,-4.262821869,0.0000268,loss,ns,-0.00000455,0.0000253,-0.179931437,0.857323953,neg,ns,-0.023900399,0.007409959,-3.225442694,0.001392066,neg,ns,2.856340117,0.000277639,0.000254828,1.089515345,0.276772901,pos,ns,0.576597213,Lrp1b,Lrp1b_Exon,2,41468833,41468882,41468833,41468834,50,+,CGTGGATCATAAATCTGAAGCCCAAATAGGGGTGGTCTTTCATGCCTCAG,"Exon (Lrp1b-201/Lrp1b, exon 14 of 91)",2,40595248,42653624,2058377,2,Lrp1b-201,1184742,Lrp1b-201;Lrp1b-208;Lrp1b-211,Lrp1b;Lrp1b;Lrp1b,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,7,94217,ENSMUSG00000049252,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14061,cg08404227,0.0000515,0.00000824,6.241430417,1.42E-09,gain,yes,-0.00000252,0.000014,-0.179822553,0.857409363,neg,ns,0.007759355,0.004102945,1.891167157,0.059534192,pos,ns,1.225233533,-0.0000824,0.0001411,-0.583990202,0.559651597,neg,ns,0.105025842,Slco3a1,Slco3a1_Exon,7,74554449,74554498,74554449,74554450,50,-,CGCACTCGGACACCAGGAAGATCTTGATGTTGGAAAAGCAGGACACCTTC,Promoter (<=1kb),7,74346786,74554474,207689,2,Slco3a1-205,0,Slco3a1-202;Slco3a1-201;Slco3a1-203;Slco3a1-205;Slco3a1-207,Slco3a1;Slco3a1;Slco3a1;Slco3a1;Slco3a1,0;0;0;0;-1855,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,108116,ENSMUSG00000025790,conserved gene and region,7,74554151,74554450,300,*,300,35,0.756666667,0.837320574,0.116666667,1.86E-29,CpGisland,TRUE,U3,Pr-B
26912,cg05170536,0.00000212,0.000013,0.163447997,0.870272219,gain,ns,0.00000396,0.0000221,0.179699247,0.857506087,pos,ns,0.008068173,0.006461394,1.248673847,0.212726542,pos,ns,0.672178319,-0.000496472,0.000222207,-2.234277468,0.02617747,neg,ns,0.269429747,Prdm16,Prdm16_Intron,4,154581737,154581786,154581737,154581738,50,-,CGCAGAAGAGTGCAAAGATTTGTCTTTAGAAAGCACAGTGCTGAAATCTA,"Intron (Prdm16-201/Prdm16, intron 1 of 16)",4,154316125,154636866,320742,2,Prdm16-201,55080,Prdm16-201;Prdm16-202;Prdm16-203;Prdm16-204;Prdm16-205;Prdm16-206;Prdm16-210;Prdm16-207;Prdm16-212,Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,32,70673,ENSMUSG00000039410,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13113,cg25609640,-0.0000189,0.00000546,-3.469078673,0.000596196,loss,ns,0.00000166,0.00000927,0.179349564,0.857780398,pos,ns,0.00099522,0.002716937,0.366302194,0.714389458,pos,ns,0.146064963,-0.0000425,0.0000934,-0.454943094,0.649468613,neg,ns,0.923630749,Tcf4,Tcf4_Intron,18,69500434,69500483,69500434,69500435,50,+,CGCAGTCAGGAGATTGGATCGGTTTCATTCCGCTCACAATTCCCAAATGC,"Intron (Tcf4-259/Tcf4, intron 5 of 6)",18,69343356,69564082,220727,1,Tcf4-259,157078,Tcf4-259;Tcf4-201;Tcf4-207;Tcf4-210;Tcf4-240;Tcf4-254;Tcf4-246;Tcf4-206;Tcf4-202;Tcf4-257;Tcf4-232;Tcf4-248;Tcf4-231;Tcf4-205;Tcf4-253;Tcf4-233;Tcf4-238;Tcf4-245;Tcf4-249;Tcf4-219;Tcf4-235;Tcf4-227;Tcf4-250;Tcf4-229;Tcf4-260;Tcf4-226;Tcf4-216;Tcf4-256,Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,42,66,21413,ENSMUSG00000053477,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3344,cg26439200,0.0000194,0.00000649,2.988741882,0.003025304,gain,ns,0.00000198,0.000011,0.179317826,0.857805296,pos,ns,0.001231417,0.003231064,0.381118212,0.703376594,pos,ns,0.152812087,0.000166491,0.000111116,1.498350402,0.135059809,pos,ns,0.905570095,Gm11890,Gm11890_Intergenic_upstream,4,23753960,23754009,23754008,23754009,50,+,ATATATCTCGATACCTTGATAGATTGTCCGCTTCCCCTCTGTGACAGCCG,Distal Intergenic,4,23659928,23660344,417,2,Gm11890-201,-93616,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,15,32,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11607,cg24974225,0.000033,0.00000374,8.83148059,7.80E-17,gain,yes,0.00000114,0.00000635,0.179222785,0.857879855,pos,ns,0.004481808,0.001859256,2.410538636,0.016510769,pos,ns,1.782232704,-0.0000287,0.0000639,-0.449230968,0.653578951,neg,ns,0.077091835,Emx2,Emx2_fiveUTR,19,59458696,59458745,59458696,59458697,50,+,CGGAGGAAGCTGTTTATGTGATCCCCGCACTAATTAGGCTCATGAACTAA,Promoter (<=1kb),19,59458372,59465357,6986,1,Emx2-201,324,Emx2-201;Emx2-202;Emx2-203,Emx2;Emx2;Emx2,0;-774;-4057,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,23,13797,ENSMUSG00000043969,mapped to different genes,19,59458392,59458858,467,*,467,34,0.597430407,0.819721218,0.072805139,2.25E-21,CpGisland,TRUE,U13,Hc-P
8376,cg18784090,0.0000797,0.0000124,6.448724657,4.32E-10,gain,yes,-0.00000376,0.000021,-0.179203574,0.857894926,neg,ns,0.028880605,0.006147697,4.697792827,0.00000396,pos,ns,5.402489747,-0.000811206,0.000211419,-3.836962608,0.000150952,neg,ns,0.457861811,Kazald1,Kazald1_Promoter,19,45067404,45067453,45067404,45067405,50,+,CGGGCTCCCCCGGCCTTAATGAGATAATCAATACTTGTTCTCGGCTTAAT,Promoter (7-8kb),19,45075241,45079289,4049,1,Kazald1-202,-7788,NA,NA,NA,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,3,8,107250,ENSMUSG00000025213,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
22886,cg10752869,-0.0000085,0.000013,-0.652163939,0.514778676,loss,ns,-0.00000396,0.0000221,-0.178994134,0.858059235,neg,ns,-0.017403283,0.006488341,-2.682239232,0.007705154,neg,ns,2.113218655,0.000420166,0.000223134,1.88302683,0.060632873,pos,ns,0.254259436,Meis2,Meis2_fiveUTR,2,116065202,116065251,116065202,116065203,50,-,CGGCCCGTCAGCAGCCCACATGTAACCGAACTGTCGTGTTTCATGGCTTT,Promoter (<=1kb),2,115863064,116065839,202776,2,Meis2-205,588,Meis2-201;Meis2-203;Meis2-205;Meis2-206;Meis2-204;Meis2-202;Meis2-213;Meis2-210;Meis2-209,Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2,0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,11,97,17536,ENSMUSG00000027210,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13818,cg09509779,0.0000811,0.00000624,13.00658122,3.67E-31,gain,yes,0.0000019,0.0000106,0.178910311,0.858124998,pos,ns,0.012110976,0.003104157,3.901535202,0.000117263,pos,ns,3.930839562,-0.000160158,0.000106752,-1.500281974,0.134559132,neg,ns,0.174406355,Six1,Six1_Intergenic_downstream,12,73035699,73035748,73035699,73035700,50,-,CGCGTTACAACTTTCATTTCCTGAAATGTTTGAGGGAACATCCAGGGTTT,Distal Intergenic,12,73040015,73042815,2801,2,Six1-204,7116,Six1-204,Six1,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,18,20471,ENSMUSG00000051367,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
14049,cg11609132,0.0000595,0.0000113,5.26445744,0.000000263,gain,yes,0.00000343,0.0000192,0.178696996,0.858292356,pos,ns,0.032206175,0.005628384,5.722100198,2.48E-08,pos,ns,7.605428745,-0.00060036,0.00019356,-3.101677894,0.002101251,neg,ns,0.569456606,Gm27189,Gm27189_Intergenic_upstream,9,74479439,74479488,74479487,74479488,50,-,AGAATTACACAGCTCGCCATGGCTGCAGCCAGATAATTATTATTGATTCG,Distal Intergenic,9,74568238,74568427,190,1,Gm27189-201,-88799,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,5,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23825,cg19313517,-0.00000363,0.00000201,-1.804668513,0.072096913,loss,ns,0.000000611,0.00000342,0.178688242,0.858299223,pos,ns,-0.00235911,0.00100229,-2.353719041,0.019210665,neg,ns,1.716457608,0.0000547,0.0000345,1.587183644,0.113490483,pos,ns,0.036866157,Galnt2l,Galnt2l_fiveUTR,8,120488455,120488504,120488455,120488456,50,-,CGTGAAACCCTGTTGGAAACAGGTCTCTTGACCCTCGCCCTTGACATTCA,5' UTR,8,119910841,124345722,4434882,1,Galnt2l-201,577614,Galnt2l-201;Gse1-206;Gse1-201,Galnt2l;Gse1;Gse1,0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,28,,NA,mapped to different genes,8,120488316,120488539,224,*,224,13,0.589285714,0.736097068,0.058035714,0.000000248,CpGisland,TRUE,U1,Pr-A
24643,cg18916435,0.0000164,0.00000734,2.240162958,0.025788674,gain,ns,0.00000223,0.0000125,0.178535376,0.85841916,pos,ns,-0.000617916,0.003652512,-0.169175591,0.865768864,neg,ns,0.062598037,-0.00023866,0.00012561,-1.900018028,0.058358495,neg,ns,0.861296241,Gm34091,Gm34091_Intergenic_downstream,6,127417931,127417980,127417931,127417932,50,+,CGGTAGTTAACACAAGCAAAAACCATGTTTAAAACAAAGCCCAAGGAACA,Distal Intergenic,6,127411130,127411733,604,1,Gm34091-201,6801,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,5,102637222,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1617,cg19595637,0.0000274,0.00000856,3.198098427,0.001526328,gain,ns,0.0000026,0.0000145,0.178528165,0.858424818,pos,ns,0.003940915,0.004260556,0.924976643,0.355697523,pos,ns,0.448919159,-0.0000683,0.00014652,-0.465969667,0.641564442,neg,ns,0.601685153,Zfp521,Zfp521_Intron,18,13861590,13861639,13861638,13861639,50,-,GGCATTAAAGACACGAAAACCTGCCACTTATCAGAATTGTATTTGAATCG,"Intron (Zfp521-201/Zfp521, intron 3 of 7)",18,13687013,13972787,285775,2,Zfp521-201,111148,Zfp521-201;Zfp521-204;Zfp521-203;Zfp521-207;Zfp521-202,Zfp521;Zfp521;Zfp521;Zfp521;Zfp521,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,81,225207,ENSMUSG00000024420,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4390,cg10239342,-0.00000615,0.00000737,-0.835509561,0.404074348,loss,ns,0.00000223,0.0000125,0.178302146,0.858602156,pos,ns,0.002266638,0.003666476,0.618206138,0.536893388,pos,ns,0.270111944,-0.000286189,0.00012609,-2.269723864,0.023910863,neg,ns,0.871965882,Unc5d,Unc5d_Exon,8,28724214,28724263,28724214,28724215,50,-,CGCTGACCTTGACGGACTGTTTTGAAGTTGAAGGTCTGGAAGCCACCTGT,"Exon (Unc5d-201/Unc5d, exon 10 of 18)",8,28646717,29219636,572920,2,Unc5d-201,495373,Unc5d-201;Unc5d-204;Unc5d-202;Unc5d-203;Unc5d-205,Unc5d;Unc5d;Unc5d;Unc5d;Unc5d,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,11,210801,ENSMUSG00000063626,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11003,cg05390084,0.000106216,0.0000149,7.134464064,6.90E-12,gain,yes,0.0000045,0.0000253,0.178117122,0.858747333,pos,ns,0.014135426,0.007409754,1.907678155,0.057356674,pos,ns,1.24141604,-0.00000764,0.000254821,-0.029966174,0.976113313,neg,ns,0.792179404,Gm47104,Gm47104_Promoter,13,56208544,56208593,56208592,56208593,50,-,TCTTTTTTCCTTTTTCTACTCAATGGATTGTGGTCAAGGCCATTGTAACG,Promoter (5-6kb),13,56202231,56202937,707,2,Gm47104-201,-5656,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,6,6,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
4915,cg07003579,-0.00000715,0.00000235,-3.04255958,0.002546362,loss,ns,0.000000711,0.00000399,0.178024032,0.858820377,pos,ns,-0.000817484,0.001170255,-0.698551972,0.48535577,neg,ns,0.313939803,-0.0000215,0.0000402,-0.534212477,0.593577425,neg,ns,0.03580027,Prdm10,Prdm10_Exon,9,31280715,31280764,31280763,31280764,50,-,CATAGACTGGGAGGGTGTTTCGTCTTTGCTTAGTCCCACCCAAAATGGCG,Promoter (<=1kb),9,31280538,31330618,50081,1,Prdm10-202,177,Prdm10-202;Prdm10-204,Prdm10;Prdm10,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,2,382066,ENSMUSG00000042496,conserved gene but different region,9,31280622,31280818,197,*,197,17,0.614213198,0.929245283,0.086294416,3.50E-12,CpGisland,TRUE,U1,Pr-A
22174,cg14672557,-0.0000534,0.0000154,-3.470988988,0.000592129,loss,ns,-0.00000465,0.0000262,-0.177899966,0.858917729,neg,ns,-0.030437452,0.007661425,-3.9728189,0.0000884,neg,ns,4.053627029,0.000614785,0.000263476,2.333363661,0.020268254,pos,ns,0.751614327,Mark3,Mark3_Exon,12,111592684,111592733,111592684,111592685,50,+,CGGAAACTACAGACTGTTGAAAACAATCGGCAAGGGGAATTTTGCAAAAG,"Exon (Mark3-201/Mark3, exon 2 of 16)",12,111574523,111656218,81696,1,Mark3-201,18161,Mark3-201;Mark3-202;Mark3-211;Mark3-205;Mark3-208;Mark3-206;Mark3-207,Mark3;Mark3;Mark3;Mark3;Mark3;Mark3;Mark3,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,17169,ENSMUSG00000007411,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
13633,cg05584230,0.0000136,0.00000212,6.448051738,4.34E-10,gain,yes,-0.000000639,0.00000359,-0.177865058,0.858945121,neg,ns,0.000835774,0.001052947,0.793747661,0.427949495,pos,ns,0.368607482,0.000035,0.0000362,0.96769921,0.333948966,pos,ns,0.071372446,Dlx2,Dlx2_fiveUTR,2,71546351,71546400,71546351,71546352,50,+,CGAGTGCATATCAGCCACTAGACTGTCAAAGACTCCAGTCATCCTGGCCC,Promoter (<=1kb),2,71543408,71546754,3347,2,Dlx2-201,354,Dlx2-201;Dlx2-202,Dlx2;Dlx2,0;-401,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,8,13392,ENSMUSG00000023391,conserved gene but different region,2,71546278,71546352,75,*,75,9,0.76,0.876623377,0.12,7.18E-08,CpGisland,TRUE,U3,Pr-B
10076,cg14490946,0.0000552,0.0000116,4.775827874,0.00000277,gain,ns,0.00000349,0.0000196,0.177830628,0.858972137,pos,ns,0.018520257,0.005755813,3.21766152,0.001429113,pos,ns,2.844933285,-0.000690117,0.000197942,-3.486462078,0.000560134,neg,ns,0.201818248,Hoxa1,Hoxa1_Exon,6,52161090,52161139,52161138,52161139,50,+,AATTATGACTAAACGCCTTCTAACTTAATGCTTTCGGACGGGGATCCCCG,Promoter (2-3kb),6,52155595,52158317,2723,2,Hoxa1-202,-2773,Gm28308-201;Hoxa1-201;Hoxa1-202;Hoxa2-201,Gm28308;Hoxa1;Hoxa1;Hoxa2,0;-2773;-2773;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,6,15394,ENSMUSG00000029844,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
22494,cg17822267,-0.0000116,0.00000863,-1.348791476,0.178388408,loss,ns,0.00000261,0.0000147,0.177801293,0.858995157,pos,ns,0.003862152,0.004297468,0.898704158,0.369507766,pos,ns,0.43237643,-0.00019608,0.00014779,-1.326750435,0.185567721,neg,ns,0.790270459,Wwox,Wwox_Intron,8,114847301,114847350,114847301,114847302,50,-,CGCTTCATGAATTAAGCATGAAGATTTTAGTCAATGTGCTTTCAAAGACC,"Intron (Wwox-201/Wwox, intron 8 of 8)",8,114439655,115352708,913054,1,Wwox-201,407646,Wwox-201;Wwox-203;Wwox-204;Wwox-209,Wwox;Wwox;Wwox;Wwox,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,32,32,80707,ENSMUSG00000004637,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5205,cg25558063,-0.00000472,0.00000138,-3.426895574,0.000692929,loss,ns,-0.000000416,0.00000234,-0.177727681,0.85905292,neg,ns,0.00061072,0.000685169,0.891341422,0.373437323,pos,ns,0.427782279,-0.0000284,0.0000236,-1.203351307,0.229758552,neg,ns,0.044967733,Pten,Pten_Exon,19,32758489,32758538,32758537,32758538,50,+,ATATCAAGAGGATGGATTCGACTTAGACTTGACCTGTATCCATTTCTGCG,Promoter (<=1kb),19,32757497,32826160,68664,1,Pten-201,992,Pten-201;Pten-202,Pten;Pten,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,6,19211,ENSMUSG00000013663,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
7232,cg23696633,-0.00000508,0.00000478,-1.062847214,0.288678488,loss,ns,0.00000144,0.00000812,0.177610102,0.859145187,pos,ns,-0.000148878,0.002379679,-0.062562183,0.950155462,neg,ns,0.022205331,-0.0000833,0.0000818,-1.01734277,0.309783717,neg,ns,0.906319547,Gm5267,Gm5267_Intergenic_upstream,1,41677095,41677144,41677095,41677096,50,+,CGAAAAATCCCATACGAAGCTAGTGAGATGTTAAATTCTAATTAGAAGTG,Distal Intergenic,1,42103289,42104333,1045,1,Gm5267-201,-426145,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,15,383634,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1100,cg08958348,-0.0000208,0.00000538,-3.870174072,0.000132621,loss,ns,-0.00000162,0.00000913,-0.177593918,0.859157887,neg,ns,-0.001955117,0.002675512,-0.730745159,0.465486748,neg,ns,0.332092678,-0.0000303,0.000092,-0.329308786,0.742144684,neg,ns,0.880513187,Gm14515,Gm14515_Intergenic_upstream,X,11561330,11561379,11561330,11561331,50,+,CGTGGCAGGGAAAGGATGCTACGCTATATTTTTCAGGGACACTCAATTCA,Distal Intergenic,20,11601354,11601569,216,1,Gm14515-201,-39975,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,21,28,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2066,cg01066008,0.00000115,0.00000291,0.395612915,0.692662723,gain,ns,-0.000000879,0.00000495,-0.177577488,0.85917078,neg,ns,0.003758181,0.001449998,2.591851884,0.009997998,pos,ns,2.00008695,-0.000150041,0.0000499,-3.008928301,0.002836732,neg,ns,0.926386601,Etaa1,Etaa1_Intergenic_downstream,11,17812087,17812136,17812087,17812088,50,-,CGTACAGTAAATCAGGGGGACTTCAATGGAAAAACGAAACCTCCCGGAGG,Distal Intergenic,11,17938756,17953875,15120,2,Etaa1-201,141788,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,3,68145,ENSMUSG00000016984,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15823,cg11974222,-0.00000178,0.0000032,-0.554887241,0.579371927,loss,ns,0.000000966,0.00000544,0.177477796,0.859249012,pos,ns,0.002317375,0.001594377,1.453467667,0.147105516,pos,ns,0.832371043,-0.000086,0.0000548,-1.56916389,0.117629878,neg,ns,0.927502062,Ttll12,Ttll12_Exon,15,83586888,83586937,83586936,83586937,50,+,CTGAGGTCCAGCATGTCGGTGGGGGCCCAGGGCAGCAGCATGCACTTCCG,Promoter (<=1kb),15,83581767,83586892,5126,2,Ttll12-202,0,Ttll12-201;Ttll12-203;Ttll12-202,Ttll12;Ttll12;Ttll12,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,223723,ENSMUSG00000016757,conserved gene and region,15,83586838,83587109,272,*,272,13,0.643382353,0.461980664,0.047794118,0.00000217,CpGisland,TRUE,U10,Tr-S
15114,cg10543626,-0.000004,0.00000375,-1.066201549,0.287162211,loss,ns,-0.00000113,0.00000638,-0.177435979,0.859281828,neg,ns,-0.004907527,0.001868751,-2.626100055,0.009065699,neg,ns,2.042598718,-0.00000933,0.0000643,-0.145209278,0.884640008,neg,ns,0.917149722,Zfp827,Zfp827_threeUTR,8,79189896,79189945,79189944,79189945,50,-,ACCGGGGAGCGGCCCTTCCACTGTGACCAGTGCAGCTACAGCTGCAAGCG,3' UTR,8,79028437,79193743,165307,1,Zfp827-202,161459,Zfp827-202;Zfp827-203;Zfp827-209;Zfp827-206;Zfp827-205;Zfp827-207;Zfp827-204,Zfp827;Zfp827;Zfp827;Zfp827;Zfp827;Zfp827;Zfp827,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,threeUTR,12,28,622675,ENSMUSG00000071064,conserved gene and region,8,79189795,79190007,213,*,213,16,0.61971831,0.797192983,0.075117371,1.49E-10,CpGisland,TRUE,U11,Tr-P
2052,cg14073813,-0.000000788,0.00000171,-0.461744438,0.644588453,loss,ns,0.000000514,0.0000029,0.177296138,0.85939157,pos,ns,0.000000822,0.000849633,0.000967835,0.999228402,pos,ns,0.00033523,-0.00000756,0.0000292,-0.258760119,0.795992058,neg,ns,0.036618301,Cited2,Cited2_fiveUTR,10,17723931,17723980,17723979,17723980,50,+,CTTCCAGGACTGGAAATGGCAGACCATATGATGGCCATGAACCACGGGCG,Promoter (<=1kb),10,17723218,17725674,2457,1,Cited2-201,713,Cited2-201;Cited2-203;Cited2-202,Cited2;Cited2;Cited2,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,11,17684,ENSMUSG00000039910,conserved gene but different region,10,17723975,17724278,304,*,304,25,0.700657895,0.681003584,0.082236842,3.54E-17,CpGisland,TRUE,U1,Pr-A
16473,cg26547482,-0.0000109,0.00000793,-1.372916363,0.170770651,loss,ns,0.00000239,0.0000135,0.177287319,0.859398491,pos,ns,-0.006139674,0.003946657,-1.555664362,0.120808213,neg,ns,0.917903538,0.000153542,0.000135725,1.131272297,0.258814889,pos,ns,0.814051826,Dmd,Dmd_Exon,X,85107584,85107633,85107584,85107585,50,+,CGAACAGGGAGGATCCGTGTCCTGTCTTTTAAAACTGGCATCATTTCCCT,"Exon (Dmd-203/Dmd, exon 66 of 79)",20,82948903,85206141,2257239,1,Dmd-203,2158681,Dmd-203;Dmd-215;Dmd-210;Dmd-207;Dmd-214;Dmd-212;Dmd-202;Dmd-201,Dmd;Dmd;Dmd;Dmd;Dmd;Dmd;Dmd;Dmd,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,20,28,13405,ENSMUSG00000045103,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5236,cg12935257,-0.00000199,0.00000124,-1.606928008,0.109088204,loss,ns,-0.000000372,0.0000021,-0.177179231,0.859483316,neg,ns,0.000512309,0.00061581,0.831926855,0.406090612,pos,ns,0.391377051,-0.0000185,0.0000212,-0.871521505,0.384143915,neg,ns,0.025735445,Atxn7l1,Atxn7l1_fiveUTR,12,33147747,33147796,33147747,33147748,50,-,CGTTCTCGAATCCCGTGTCTCTCGGCTGCTGCTGCCGAAGGAACAGGGAA,Promoter (<=1kb),12,33147754,33373030,225277,1,Atxn7l1-212,0,Atxn7l1-201;Atxn7l1-203;Atxn7l1-212;Atxn7l1-206;Atxn7l1-204;Atxn7l1-208,Atxn7l1;Atxn7l1;Atxn7l1;Atxn7l1;Atxn7l1;Atxn7l1,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,24,380753,ENSMUSG00000020564,conserved gene but different region,12,33147399,33147783,385,*,385,47,0.711688312,0.979166667,0.122077922,1.93E-40,CpGisland,TRUE,U2,Pr-W
2984,cg07086730,-0.000000314,0.000000633,-0.496480501,0.6199073,loss,ns,-0.00000019,0.00000108,-0.177080965,0.859560434,neg,ns,0.0000434,0.000315161,0.137644795,0.89061051,pos,ns,0.050312184,-0.00000344,0.0000108,-0.3172702,0.751252163,neg,ns,0.985131463,Lrmda,Lrmda_Intron,14,22255591,22255640,22255639,22255640,50,+,TGGATGTAATAAGCTGTAGGTACAGCTTCGAGAGCCCTTGATTTATTGCG,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,235879,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206,Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,14,22255619,22255720,102,*,102,9,0.588235294,1.0625,0.088235294,0.00000109,CpGisland,TRUE,U15,NS
22080,cg27410676,-0.0000133,0.00000379,-3.513317771,0.000508413,loss,ns,-0.00000114,0.00000645,-0.177018019,0.859609834,neg,ns,-0.001384874,0.001888317,-0.73339053,0.463874516,neg,ns,0.333599486,-0.00010207,0.0000649,-1.57177463,0.117022882,neg,ns,0.126553686,Wdr20,Wdr20_Exon,12,110738234,110738283,110738282,110738283,50,+,TGGGCCGGGAGCTGTACTTCTATATCTACAAGGGGGTCCGCAAGGTACCG,Promoter (<=1kb),12,110737944,110804238,66295,1,Wdr20-205,290,Wdr20-205;Wdr20-204;Wdr20-203;Wdr20-201;Wdr20-202;Wdr20-207,Wdr20;Wdr20;Wdr20;Wdr20;Wdr20;Wdr20,0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,8,69641,ENSMUSG00000037957,conserved gene but different region,12,110737489,110738785,1297,*,1297,129,0.68080185,0.867167335,0.099460293,3.23E-97,CpGisland,TRUE,U1,Pr-A
18497,cg23815914,-0.0000425,0.0000105,-4.056205455,0.0000632,loss,ns,0.00000315,0.0000178,0.1769153,0.85969045,pos,ns,-0.007895001,0.005216064,-1.513593502,0.131147808,neg,ns,0.882238964,-0.0000363,0.00017938,-0.202626029,0.839560264,neg,ns,0.854864603,Cnot6l,Cnot6l_threeUTR,5,96094260,96094309,96094308,96094309,50,-,TAGCTGCCGGGTAGCGTATTTATCACATAACACATTGTAACACATAACCG,3' UTR,5,96070333,96161990,91658,2,Cnot6l-210,67681,Cnot6l-210;Cnot6l-201;Cnot6l-202;Cnot6l-203,Cnot6l;Cnot6l;Cnot6l;Cnot6l,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,11,13,231464,ENSMUSG00000034724,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13602,cg19317509,0.0000223,0.00000429,5.185077184,0.00000039,gain,yes,0.00000129,0.00000729,0.176914562,0.859691029,pos,ns,0.001576099,0.002136524,0.737693193,0.461258928,pos,ns,0.336055215,0.0000702,0.0000735,0.955430546,0.340104463,pos,ns,0.065217155,Dlx1,Dlx1_fiveUTR,2,71528327,71528376,71528327,71528328,50,+,CGGATCTGAGCACTTGAGACTACCATTTAATCAAATGAATCAGTAACTAA,Promoter (<=1kb),2,71528113,71533980,5868,1,Dlx1-201,214,Dlx1-201;Dlx1-202;Dlx1-205;Dlx1-204;Dlx1-203;Dlx1-206;Metap1d-201;Metap1d-205;Metap1d-203,Dlx1;Dlx1;Dlx1;Dlx1;Dlx1;Dlx1;Metap1d;Metap1d;Metap1d,0;0;0;0;0;-2404;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,12,36,13390,ENSMUSG00000041911,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
19573,cg22610366,0.000088,0.0000084,10.47493399,3.51E-22,gain,yes,-0.00000252,0.0000143,-0.176752707,0.859818059,neg,ns,0.007567203,0.004182143,1.809407988,0.071356141,pos,ns,1.146568643,0.000059,0.000143824,0.410571744,0.681670218,pos,ns,0.288250066,Sox14,Sox14_Exon,9,99874986,99875035,99874986,99874987,50,-,CGAATAAGGGTCTATGCCAGTCTTGGTCATGCCTGGGAAGAGGATGTAGG,"Exon (Sox14-201/Sox14, exon 1 of 1)",9,99874106,99876170,2065,2,Sox14-201,1135,Sox14-201;Sox14-202,Sox14;Sox14,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,18,20669,ENSMUSG00000053747,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
25866,cg08427503,0.0000593,0.0000113,5.233832011,0.000000307,gain,yes,0.0000034,0.0000193,0.176740369,0.859827742,pos,ns,0.012360832,0.005642031,2.190847806,0.029207037,pos,ns,1.534512499,-0.000353765,0.000194029,-1.823259213,0.069227077,neg,ns,0.205313566,Pax7,Pax7_Intron,4,139825962,139826011,139826010,139826011,50,-,AGTTTTCATTACCAGCTCTAATAAGTCTTAACATTATTAAATGCCAAGCG,"Intron (Pax7-201/Pax7, intron 4 of 8)",4,139737062,139833528,96467,2,Pax7-201,7517,Pax7-201;Pax7-202,Pax7;Pax7,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,27,18509,ENSMUSG00000028736,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
11135,cg02514623,-0.000112635,0.0000151,-7.463301927,8.58E-13,loss,yes,0.00000453,0.0000256,0.176627446,0.85991637,pos,ns,-0.021510046,0.00751136,-2.863668749,0.004473197,neg,ns,2.349381927,0.000407787,0.000258315,1.578640507,0.115438361,pos,ns,0.641007741,Lingo1,Lingo1_Intron,9,56706784,56706833,56706784,56706785,50,-,CGAAAGCATTAAGCGTCTTCAAAGAGCAGAGGCATTAAAAATTGAAATCA,"Intron (Lingo1-206/Lingo1, intron 3 of 6)",9,56618475,56796138,177664,2,Lingo1-206,89305,Lingo1-206;Lingo1-205;Lingo1-207;Lingo1-204;Lingo1-208,Lingo1;Lingo1;Lingo1;Lingo1;Lingo1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,25,235402,ENSMUSG00000049556,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13895,cg00315292,0.00000945,0.00000394,2.397073379,0.017118374,gain,ns,-0.00000118,0.0000067,-0.176574594,0.859957852,neg,ns,0.000733901,0.00196193,0.374071005,0.708607212,pos,ns,0.149594432,0.000183928,0.0000675,2.726043913,0.006774403,pos,ns,0.098307603,Irx4,Irx4_Intergenic_downstream,13,73272093,73272142,73272141,73272142,50,-,ATTAAGCGAGTCTGACAGCAGCATATTCAGGCTCGACAAGGGAACAGGCG,Downstream (2-3kb),13,73260497,73269608,9112,1,Irx4-201,11645,Irx4-202;Irx4-201,Irx4;Irx4,0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,6,7,50916,ENSMUSG00000021604,conserved gene and region,13,73271779,73272166,388,*,388,36,0.615979381,0.992750533,0.092783505,1.98E-26,CpGisland,TRUE,U3,Pr-B
23939,cg13154210,-0.000054,0.0000114,-4.729019636,0.00000343,loss,ns,-0.00000342,0.0000194,-0.176514511,0.860005009,neg,ns,-0.016114366,0.005682876,-2.835600569,0.004874674,neg,ns,2.31205445,0.000314714,0.000195434,1.610337789,0.108341872,pos,ns,0.552704579,Insig2,Insig2_Exon,1,121227479,121227528,121227479,121227480,50,-,CGTTGTGATTCATTTTGTCAGACCATTAAACAAGATTCTGTCCAGTTCCT,"Exon (Gm29359-201/Gm29359-201, exon 2 of 2)",1,121305893,121307318,1426,2,Insig2-206,79839,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,17,72999,ENSMUSG00000003721,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5157,cg16734905,-0.0000264,0.00000889,-2.973660981,0.003173607,loss,ns,-0.00000266,0.0000151,-0.176463882,0.860044748,neg,ns,-0.002395321,0.004422831,-0.541580917,0.588496256,neg,ns,0.230256296,0.000093,0.000152101,0.611634049,0.541228187,pos,ns,0.864332757,Fli1,Fli1_Intergenic_upstream,9,32567688,32567737,32567736,32567737,50,-,AACTCAGTAAAACAGGGTTACAAGAACATCTGGCTTTGCACAGTTCCACG,Distal Intergenic,9,32428059,32542861,114803,2,Fli1-202,-24876,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,15,14247,ENSMUSG00000016087,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2942,cg01302905,-0.000046,0.00000943,-4.872910938,0.00000176,loss,yes,0.00000283,0.000016,0.17641973,0.860079401,pos,ns,-0.008507899,0.004693304,-1.812773803,0.070833886,neg,ns,1.149758931,-0.0000717,0.000161402,-0.444302584,0.657133836,neg,ns,0.719264608,Gm11880,Gm11880_Intergenic_downstream,4,22103108,22103157,22103108,22103109,50,+,CGGGCCCAAGGGCAGAGGTTCTGTATATCATTCAAAGACCATCTGTCGTG,Distal Intergenic,4,22117134,22117532,399,2,Gm11880-201,14375,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,11,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7149,cg21316446,0.00000929,0.00000248,3.746116939,0.000214114,gain,ns,-0.000000743,0.00000421,-0.176302893,0.860171107,neg,ns,0.0031591,0.001234015,2.560017458,0.010940592,pos,ns,1.960959167,-0.000124787,0.0000424,-2.940468361,0.003523745,neg,ns,0.059067705,Lcor,Lcor_Intron,19,41483897,41483946,41483945,41483946,50,+,TTTCGTTGGAAGGAATTATGCAAATCCTGCTTTCTGGTGTCCATTCAGCG,"Intron (Lcor-201/Lcor, intron 2 of 7)",19,41482637,41562261,79625,1,Lcor-201,1260,Lcor-201;Lcor-204;Lcor-206,Lcor;Lcor;Lcor,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,25,212391,ENSMUSG00000025019,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
7669,cg23200277,-0.00000239,0.00000213,-1.119192081,0.263924639,loss,ns,0.000000638,0.00000362,0.176238156,0.86022192,pos,ns,0.000122356,0.001060815,0.115341793,0.908248889,pos,ns,0.041795125,-0.0000541,0.0000365,-1.482947196,0.139104336,neg,ns,0.965040814,Zbtb20,Zbtb20_Exon,16,43618672,43618721,43618672,43618673,50,+,CGTCTGCCCAGCAAAGTTTGACCAAATCGAGCAGTTCAACGACCACATGA,"Exon (Zbtb20-204/Zbtb20, exon 15 of 15)",16,42907652,43642602,734951,1,Zbtb20-204,711020,Zbtb20-204;Zbtb20-201;Zbtb20-203;Zbtb20-202;Zbtb20-205,Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,17,98,56490,ENSMUSG00000022708,conserved gene and region,16,43618553,43618783,231,*,231,17,0.597402597,0.833404075,0.073593074,4.87E-11,CpGisland,TRUE,U11,Tr-P
17434,cg03968445,-0.0000105,0.00000406,-2.596287435,0.009872602,loss,ns,0.00000121,0.00000689,0.176156551,0.860285973,pos,ns,0.002974021,0.00201988,1.472374659,0.141934244,pos,ns,0.847912812,-0.000107224,0.0000695,-1.543606679,0.123703824,neg,ns,0.778367533,Crtc2,Crtc2_Exon,3,90261061,90261110,90261109,90261110,50,+,GTTTTCGCCAACAATGTCACCCACCTTGTCTTCCATCACTCAGGTATGCG,"Exon (Crtc2-201/Crtc2, exon 11 of 14)",3,90254163,90264125,9963,1,Crtc2-201,6898,Crtc2-201;Crtc2-203;Crtc2-206;Crtc2-202;Crtc2-205;Crtc2-208;Crtc2-204;Crtc2-207;Dennd4b-202,Crtc2;Crtc2;Crtc2;Crtc2;Crtc2;Crtc2;Crtc2;Crtc2;Dennd4b,0;0;0;6737;0;0;3010;2096;-4075,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,5,74343,ENSMUSG00000027936,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1880,cg16241714,-0.000000688,0.000000323,-2.133682027,0.03365356,loss,ns,9.65E-08,0.000000548,0.176154358,0.860287695,pos,ns,0.00033776,0.000160546,2.103817766,0.036199626,pos,ns,1.441295913,-0.0000113,0.00000552,-2.05211784,0.040997767,neg,ns,0.007782349,Cebpd,Cebpd_Exon,16,15887495,15887544,15887495,15887496,50,+,CGCCATCGACTTCAGCGCCTACATCGACTCCATGGCCGCCGTGCCCACCC,Promoter (<=1kb),16,15887286,15891031,3746,1,Cebpd-201,209,Cebpd-201;Cebpd-202;Spidr-201,Cebpd;Cebpd;Spidr,0;-872;259307,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,12609,ENSMUSG00000071637,conserved gene and region,16,15886711,15888267,1557,*,1557,159,0.676300578,0.893368025,0.102119461,1.26E-121,CpGisland,TRUE,U1,Pr-A
27212,cg19142001,0.000000945,0.00000191,0.495506309,0.620593836,gain,ns,0.00000057,0.00000324,0.176153789,0.860288142,pos,ns,0.0000685,0.000948788,0.072163693,0.942518174,pos,ns,0.025710267,0.00000327,0.0000326,0.100286501,0.920181699,pos,ns,0.947867139,Plcg1,Plcg1_Exon,2,160751160,160751209,160751160,160751161,50,-,CGGGGACATCACCTACGGGCAGTTTGCTCAGCTGTACCGCAGCCTCATGT,"Exon (Plcg1-208/Plcg1, exon 7 of 33)",2,160731300,160762502,31203,1,Plcg1-208,19860,Plcg1-208;Plcg1-202;Plcg1-212;Plcg1-203;Plcg1-201;Plcg1-211;Plcg1-210;Plcg1-209;Plcg1-205;Plcg1-204;Plcg1-207;Zhx3-205,Plcg1;Plcg1;Plcg1;Plcg1;Plcg1;Plcg1;Plcg1;Plcg1;Plcg1;Plcg1;Plcg1;Zhx3,0;0;0;0;0;-1278;-1343;-2858;-3338;-3363;-3697;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,18803,ENSMUSG00000016933,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11924,cg24602575,-0.00000681,0.00000601,-1.133343173,0.257945903,loss,ns,0.0000018,0.0000102,0.175921591,0.860470404,pos,ns,0.004332873,0.002991173,1.448553035,0.148473145,pos,ns,0.828352091,-0.000141159,0.000102866,-1.372261671,0.170974094,neg,ns,0.867963813,Gm13626,Gm13626_Intergenic_downstream,2,61686011,61686060,61686059,61686060,50,+,AAATACCAGCTTGTGTTTACAGTTTCAGTCCTCCTGATGGCGGATGGGCG,Distal Intergenic,2,61706893,61707591,699,2,Gm13626-201,21531,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,8,,NA,mapped to different genes,2,61686048,61686109,62,*,62,9,0.629032258,1.468421053,0.14516129,1.18E-08,CpGisland,TRUE,U15,NS
25851,cg24798812,-0.0000177,0.00000571,-3.102900539,0.002092854,loss,ns,0.00000171,0.0000097,0.175797292,0.860567975,pos,ns,-0.00261623,0.002842547,-0.920382338,0.358088647,neg,ns,0.446009448,-0.0000267,0.0000978,-0.273511697,0.784642038,neg,ns,0.884062431,Pax7,Pax7_Intron,4,139760864,139760913,139760864,139760865,50,+,CGGGGGCACTGAGCGAGTGAAAAATGTCAGAGCAAATTGCTCTTGACAGC,"Intron (Pax7-201/Pax7, intron 7 of 8)",4,139737062,139833528,96467,2,Pax7-201,72615,Pax7-201;Pax7-202,Pax7;Pax7,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,27,18509,ENSMUSG00000028736,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18925,cg26521800,0.00000619,0.0000109,0.568393803,0.570179093,gain,ns,-0.00000325,0.0000185,-0.175786543,0.860576413,neg,ns,-0.001074399,0.005422517,-0.198136623,0.84306804,neg,ns,0.074137374,-0.000102662,0.00018648,-0.550523646,0.582356745,neg,ns,0.739724685,Dach1,Dach1_Intron,14,97944816,97944865,97944864,97944865,50,-,TATACCATGAACCCAGCAACAAAAAGACAGAGCAGATGTTACTTCAGACG,"Intron (Dach1-201/Dach1, intron 3 of 10)",14,97786853,98169543,382691,2,Dach1-201,224678,Dach1-201;Dach1-202;Dach1-203,Dach1;Dach1;Dach1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,76,13134,ENSMUSG00000055639,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15810,cg18287975,0.0000011,0.00000105,1.05158606,0.293808531,gain,ns,-0.000000314,0.00000178,-0.175769355,0.860589905,neg,ns,0.000404952,0.000522928,0.774393513,0.439288329,pos,ns,0.357250335,0.0000119,0.000018,0.662275358,0.508286808,pos,ns,0.031529122,Mef2c,Mef2c_fiveUTR,13,83524877,83524926,83524877,83524878,50,+,CGCGTACACCCAGACATCTTCGGGCTGCTATTGGATTGACTTTGAAGGTT,Promoter (<=1kb),13,83524891,83652910,128020,1,Mef2c-215,0,Mef2c-218;Mef2c-228;Mef2c-221;Mef2c-229;Mef2c-201;Mef2c-202;Mef2c-207;Mef2c-231;Mef2c-222;Mef2c-223;Mef2c-209;Mef2c-227;Mef2c-217;Mef2c-213;Mef2c-214;Mef2c-215;Mef2c-226,Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,9,41,17260,ENSMUSG00000005583,conserved gene and region,13,83524744,83524941,198,*,198,25,0.651515152,1.236263736,0.126262626,4.20E-22,CpGisland,TRUE,NA,NRS
10803,cg08390738,0.00000337,0.00000205,1.640348045,0.101947063,gain,ns,-0.000000613,0.00000349,-0.175760713,0.860596689,neg,ns,0.000675766,0.001022524,0.660879754,0.509180258,pos,ns,0.293128443,-0.0000479,0.0000352,-1.363486223,0.17371867,neg,ns,0.950819264,Vti1a,Vti1a_Intron,19,55477182,55477231,55477182,55477183,50,+,CGGTGGACTCCCTGAGGTCCTGACTAATTGTGTAGATTGCTTTTAAGCTT,"Intron (Vti1a-206/Vti1a, intron 5 of 7)",19,55316295,55577001,260707,1,Vti1a-206,160887,Vti1a-206;Vti1a-202;Vti1a-201,Vti1a;Vti1a;Vti1a,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,32,53611,ENSMUSG00000024983,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12869,cg01932632,-0.000000298,0.00000144,-0.20611732,0.836834569,loss,ns,-0.000000431,0.00000245,-0.175627442,0.860701306,neg,ns,0.001114212,0.000719064,1.549530312,0.122274553,pos,ns,0.912663915,-0.0000756,0.0000247,-3.057434989,0.00242686,neg,ns,0.060825275,Spire1,Spire1_Exon,18,67610574,67610623,67610574,67610575,50,+,CGCCTGCTCCTCGTTGATGGGCTGGTTGTACAGCCGCAGGATCTCCTCCA,Promoter (<=1kb),18,67488209,67610790,122582,2,Spire1-203,167,Spire1-203,Spire1,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,68166,ENSMUSG00000024533,conserved gene and region,18,67610213,67611300,1088,*,1088,156,0.752757353,1.0137978,0.143382353,8.84E-146,CpGisland,TRUE,U1,Pr-A
24641,cg04676354,-0.00000956,0.00000307,-3.115496263,0.002008122,loss,ns,-0.000000915,0.00000521,-0.17559214,0.860729018,neg,ns,-0.002960119,0.001527369,-1.938050965,0.053524784,neg,ns,1.271445073,0.0000133,0.0000525,0.253614531,0.799961487,pos,ns,0.956538562,Pard3,Pard3_Exon,8,127409680,127409729,127409680,127409681,50,-,CGAAAATCAAAAAGCATGGATTTAGGTAGTGAGTACAATCTCCATGAATC,"Exon (Pard3-219/Pard3, exon 17 of 25)",8,127063893,127611970,548078,1,Pard3-219,345787,Pard3-219;Pard3-202;Pard3-209;Pard3-211;Pard3-222;Pard3-201;Pard3-224;Pard3-210;Pard3-216;Pard3-223;Pard3-221;Pard3-213;Pard3-206;Pard3-214;Pard3-220;Pard3-215;Pard3-227,Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3;Pard3,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,8,93742,ENSMUSG00000025812,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4478,cg18487756,-0.00000834,0.0000115,-0.726000289,0.468386352,loss,ns,0.00000343,0.0000195,0.175519713,0.860785874,pos,ns,0.021506328,0.005720891,3.759261797,0.000203639,pos,ns,3.691139564,-0.000204942,0.000196741,-1.041684649,0.298369608,neg,ns,0.812751161,Srsf3,Srsf3_threeUTR,17,29039815,29039864,29039815,29039816,50,-,CGCAACATCTGGCAAAACCTTTTCAGCAAATTCTTCCTGGCCGTCAGTCC,3' UTR,17,29032628,29043373,10746,1,Srsf3-202,7187,Srsf3-202;Srsf3-201;Srsf3-204;Srsf3-210;Srsf3-209;Srsf3-208;Srsf3-203;Srsf3-206;Srsf3-205;Srsf3-207,Srsf3;Srsf3;Srsf3;Srsf3;Srsf3;Srsf3;Srsf3;Srsf3;Srsf3;Srsf3,0;0;0;7142;7126;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,7,20383,ENSMUSG00000071172,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21400,cg01510883,0.0000145,0.00000337,4.296545388,0.0000233,gain,ns,-0.000001,0.00000572,-0.175327373,0.860936866,neg,ns,-0.001048836,0.001675186,-0.626101291,0.531709223,neg,ns,0.274325806,0.000118123,0.0000576,2.050404212,0.041165663,pos,ns,0.061295321,Gnai2,Gnai2_Intron,9,107633406,107633455,107633406,107633407,50,-,CGCACTCACAGCAGAGACAGGAAGAGGCAAGCGCCCAACGCAAAGCAGCC,"Intron (Gnai2-202/Gnai2, intron 1 of 8)",9,107614125,107635312,21188,2,Gnai2-202,1857,Gnai2-202;Gnai2-201;Gnai2-207;Gnai2-203;Gnai2-208,Gnai2;Gnai2;Gnai2;Gnai2;Gnai2,0;0;0;0;1888,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,14678,ENSMUSG00000032562,conserved gene but different region,9,107633292,107633610,319,*,319,29,0.677115988,0.803038194,0.090909091,3.99E-21,CpGisland,TRUE,U1,Pr-A
24383,cg27362207,-0.0000198,0.00000426,-4.635764022,0.00000525,loss,ns,0.00000127,0.00000724,0.175227842,0.861015003,pos,ns,-0.001154036,0.002121955,-0.543854875,0.586932255,neg,ns,0.231412023,-0.0000573,0.000073,-0.784644075,0.433261467,neg,ns,0.743545386,Chd4,Chd4_Exon,6,125102433,125102482,125102433,125102434,50,+,CGAGGAGGAGGTGACTGCTGTGGATGGTTATGAGACAGACCACCAGGACT,"Exon (Chd4-203/Chd4, exon 9 of 39)",6,125095981,125130585,34605,1,Chd4-203,6452,Chd4-203;Chd4-201;Chd4-202;Chd4-207,Chd4;Chd4;Chd4;Chd4,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,15,107932,ENSMUSG00000063870,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22724,cg22121570,0.0000156,0.0000086,1.809736602,0.071305013,gain,ns,-0.00000256,0.0000146,-0.175221697,0.861019827,neg,ns,-0.000419496,0.004280247,-0.098007354,0.921989792,neg,ns,0.035273887,0.0000796,0.000147197,0.540855516,0.588995585,pos,ns,0.283330872,Meis2,Meis2_Intergenic_downstream,2,115856847,115856896,115856847,115856848,50,-,CGGGCAGAAAAAGCCCTCAACATTACCCTGCTAGTTATTAATCAGAAAGG,Distal Intergenic,2,115864227,115868867,4641,2,Meis2-219,12020,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,97,17536,ENSMUSG00000027210,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
12321,cg09152553,-0.000000502,0.00000332,-0.151433294,0.879732426,loss,ns,0.000000987,0.00000563,0.175120849,0.861099,pos,ns,-0.000696106,0.00165069,-0.42170597,0.673531922,neg,ns,0.171641816,0.00000735,0.0000568,0.129497949,0.897047629,pos,ns,0.905891835,Smad6,Smad6_Exon,9,63953882,63953931,63953882,63953883,50,+,CGCTGCTCCAGGTTGAGCTGGCCCAGGCAGAAGCCGCTGCCCTGAGGTAG,"Exon (Smad6-201/Smad6, exon 4 of 4)",9,63953076,64022059,68984,2,Smad6-201,68128,Smad6-201;Smad6-202,Smad6;Smad6,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,19,17130,ENSMUSG00000036867,conserved gene but different region,9,63953582,63954064,483,*,483,46,0.658385093,0.879398377,0.095238095,3.65E-34,CpGisland,TRUE,NA,NRS
13162,cg20294993,0.00000709,0.00000204,3.477253483,0.000578975,gain,ns,-0.000000607,0.00000347,-0.175056073,0.861149854,neg,ns,0.003174379,0.001015498,3.125932429,0.001940326,pos,ns,2.712125341,-0.0000751,0.0000349,-2.151197879,0.032233066,neg,ns,0.033186705,Tcf4,Tcf4_Exon,18,69593524,69593573,69593524,69593525,50,-,CGCATACACAATCCCGGGCATGGGCGGCAACTCTTTGATGTACTACTATA,"Exon (Tcf4-204/Tcf4, exon 1 of 13)",18,69344146,69684343,340198,1,Tcf4-201,249378,Tcf4-201;Tcf4-207;Tcf4-240;Tcf4-254;Tcf4-246;Tcf4-206;Tcf4-202;Tcf4-257;Tcf4-232;Tcf4-248;Tcf4-231;Tcf4-205;Tcf4-253;Tcf4-238;Tcf4-249;Tcf4-219;Tcf4-227;Tcf4-250;Tcf4-229;Tcf4-260;Tcf4-226;Tcf4-216;Tcf4-256;Tcf4-230;Tcf4-221;Tcf4-234;Tcf4-258;Tcf4-217;Tcf4-247;Tcf4-252;Tcf4-218;Tcf4-243;Tcf4-237;Tcf4-239;Tcf4-262;Tcf4-223;Tcf4-212;Tcf4-204;Tcf4-225;Tcf4-222;Tcf4-261;Tcf4-255;Tcf4-203;Tcf4-241;Tcf4-236;Tcf4-228;Tcf4-220;Tcf4-242,Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,66,21413,ENSMUSG00000053477,conserved gene and region,18,69593509,69593604,96,*,96,8,0.5625,1.059310345,0.083333333,0.00000859,CpGisland,TRUE,U1,Pr-A
18554,cg06856188,0.00000415,0.00000302,1.377462138,0.169363088,gain,ns,0.000000896,0.00000512,0.174952034,0.861231534,pos,ns,0.003616035,0.001500775,2.409445029,0.016559397,pos,ns,1.78095549,-0.0000879,0.0000516,-1.702207233,0.089719018,neg,ns,0.059165361,Hoxb7,Hoxb7_fiveUTR,11,96286638,96286687,96286686,96286687,50,-,GTAAATCTGGACTCTAATTCTGTAATATATCAAGGAATCTCGTAAAACCG,Promoter (<=1kb),11,96286623,96290162,3540,1,Hoxb7-201,15,Hoxb7-201;Hoxb7-202;Hoxb8-201;Hoxb8-202;Hoxb8-203,Hoxb7;Hoxb7;Hoxb8;Hoxb8;Hoxb8,0;-2028;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,8,15415,ENSMUSG00000038721,conserved gene and region,11,96286678,96287286,609,*,609,56,0.622331691,0.952625698,0.091954023,1.47E-40,CpGisland,TRUE,U3,Pr-B
22415,cg04691337,-0.0000269,0.0000103,-2.615165598,0.00935451,loss,ns,0.00000306,0.0000175,0.174891105,0.861279369,pos,ns,-0.001231552,0.005128387,-0.240144186,0.810377201,neg,ns,0.091312786,-0.000142792,0.000176365,-0.809638648,0.418768903,neg,ns,0.81868237,Dph6,Dph6_Intergenic_downstream,2,114441203,114441252,114441203,114441204,50,-,CGAGTCCTTCCAATGTCCTCAGTGGTACATGCTAATACCAGCCTTAACAA,Distal Intergenic,2,114518145,114545891,27747,2,Dph6-204,104688,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,10,66632,ENSMUSG00000057147,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1130,cg08728262,0.00000359,0.00000409,0.877446568,0.380923627,gain,ns,0.00000121,0.00000694,0.174876121,0.861291133,pos,ns,-0.00067858,0.002033977,-0.333621995,0.73889037,neg,ns,0.131419994,-0.0000503,0.0000699,-0.719159888,0.47258417,neg,ns,0.871522656,Gm14513,Gm14513_Intergenic_upstream,X,11747315,11747364,11747315,11747316,50,+,CGAGTGATAATGGAATCCAGGAGGTGGAAATTACAAGTTGAAAAGTAAAA,Distal Intergenic,20,11684002,11684124,123,2,Gm14513-201,-63191,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,9,668984,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2401,cg07719417,0.0000666,0.0000126,5.291058933,0.00000023,gain,yes,-0.00000373,0.0000214,-0.174671741,0.861451596,neg,ns,0.008375153,0.006263758,1.337081204,0.182176441,pos,ns,0.739507787,-0.000152352,0.00021541,-0.707265184,0.47993303,neg,ns,0.424493699,Gm12025,Gm12025_Intergenic_downstream,11,19265522,19265571,19265522,19265523,50,+,CGGCAAATGAAGATAACAACATGAGAGGGAAATCATTCACTCTAATGGGC,Distal Intergenic,11,19360926,19361069,144,2,Gm12025-201,95498,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,4,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
415,cg09010998,-0.00000549,0.00000221,-2.486469368,0.013427949,loss,ns,0.000000655,0.00000375,0.17465766,0.861462651,pos,ns,-0.000856589,0.001098744,-0.779607397,0.436216778,neg,ns,0.360297634,-0.0000364,0.0000378,-0.963689932,0.335952532,neg,ns,0.050114899,Zeb1,Zeb1_fiveUTR,18,5591905,5591954,5591953,5591954,50,+,GGATCATGGCGGATGGCCCCAGGTGTAAGCGCAGAAAGCAGGCGAACCCG,Promoter (<=1kb),18,5591912,5766570,174659,1,Zeb1-206,0,Zeb1-212;Zeb1-201;Zeb1-204;Zeb1-202;Zeb1-209;Zeb1-206;Zeb1-208;Zeb1-205;Zeb1-211;Zeb1-207,Zeb1;Zeb1;Zeb1;Zeb1;Zeb1;Zeb1;Zeb1;Zeb1;Zeb1;Zeb1,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,7,21417,ENSMUSG00000024238,mapped to different genes,18,5591882,5592967,1086,*,1086,159,0.745856354,1.076353436,0.14640884,2.52E-150,CpGisland,TRUE,U1,Pr-A
1559,cg01751178,0.00000128,0.00000722,0.177179479,0.859483121,gain,ns,-0.00000214,0.0000123,-0.174551126,0.861546296,neg,ns,0.004304367,0.003594801,1.197386741,0.232070631,pos,ns,0.634379818,-0.000195208,0.000123625,-1.57903689,0.115347403,neg,ns,0.875155361,Runx1t1,Runx1t1_Intergenic_upstream,4,13716582,13716631,13716582,13716583,50,-,CGGATTGGACAGACATTCATTGGATAAGGTCCCACAGCACTTGGAAAAGA,Distal Intergenic,4,13743436,13893649,150214,1,Runx1t1-201,-26854,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,24,12395,ENSMUSG00000006586,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7535,cg01201498,-0.00000217,0.00000435,-0.498165408,0.618720693,loss,ns,0.00000129,0.00000739,0.174388165,0.861674246,pos,ns,-0.005303296,0.002166201,-2.448201076,0.014911195,neg,ns,1.826487564,0.0000804,0.0000745,1.079891892,0.281029773,pos,ns,0.776077398,Fam214b,Fam214b_Exon,4,43036604,43036653,43036604,43036605,50,+,CGCCCCCCCTGCTGGGCTGTAGCCCATGAGCAGGCCACCCTGGAGGGCCC,"Exon (Fam214b-204/Fam214b, exon 3 of 9)",4,43032414,43040288,7875,2,Fam214b-204,3635,Fam214b-204;Fam214b-205;Fam214b-202;Fam214b-203;Fam214b-201;Fam214b-207;Fam214b-210;Fam214b-206;Fam214b-209;Fam214b-208;Stoml2-201,Fam214b;Fam214b;Fam214b;Fam214b;Fam214b;Fam214b;Fam214b;Fam214b;Fam214b;Fam214b;Stoml2,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,5,230088,ENSMUSG00000036002,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
19508,cg26715242,-0.0000973,0.0000101,-9.671262213,1.65E-19,loss,yes,0.00000298,0.0000171,0.174313682,0.861732729,pos,ns,-0.015698817,0.00500484,-3.13672739,0.001872426,neg,ns,2.727595308,0.000314299,0.000172116,1.826087008,0.068798926,pos,ns,0.833427934,Foxp1,Foxp1_Intron,6,99485715,99485764,99485715,99485716,50,+,CGGCTCTGTAACCAAGTGGGCGGCATGCGAATACCATCTGGGTACCACTT,"Intron (Foxp1-220/Foxp1, intron 1 of 19)",6,98929189,99520997,591809,2,Foxp1-220,35233,Foxp1-220;Foxp1-224;Foxp1-227;Foxp1-216;Gm20696-201;Gm20696-203,Foxp1;Foxp1;Foxp1;Foxp1;Gm20696;Gm20696,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,87,108655,ENSMUSG00000030067,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21249,cg05051981,0.00000354,0.00000205,1.726373395,0.085276548,gain,ns,-0.000000607,0.00000348,-0.174227987,0.861800015,neg,ns,0.0000937,0.0010199,0.091847308,0.92687868,pos,ns,0.032977107,-0.0000185,0.0000351,-0.526965924,0.598594133,neg,ns,0.945148012,Dock3,Dock3_Exon,9,106985995,106986044,106985995,106985996,50,-,CGCATAGCTTCTTGAATGTGGTCCTGTCGAATCAGTTCTGCTGAGCAGTC,"Exon (Dock3-201/Dock3, exon 22 of 53)",9,106892825,107231909,339085,2,Dock3-201,245865,Dock3-201,Dock3,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,9,208869,ENSMUSG00000039716,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8078,cg07290414,0.00000425,0.00000616,0.690462667,0.490419905,gain,ns,-0.00000182,0.0000105,-0.174134629,0.86187332,neg,ns,0.00649293,0.003063758,2.119269574,0.034862406,pos,ns,1.457642646,-0.000189541,0.000105362,-1.798945884,0.072999772,neg,ns,0.879686448,Runx2,Runx2_threeUTR,17,44724775,44724824,44724775,44724776,50,+,CGTTGAACCTTGCTACTTGGTTTTTCATAACAGCAGAGGCATTCCGGAGC,3' UTR,17,44495987,44736176,240190,2,Runx2-212,11352,Runx2-212;Runx2-214;Runx2-203;Runx2-202;Runx2-213;Runx2-204;Runx2-210;Runx2-211;Runx2-207;Runx2-201;Runx2-209;Runx2-205;Runx2-206,Runx2;Runx2;Runx2;Runx2;Runx2;Runx2;Runx2;Runx2;Runx2;Runx2;Runx2;Runx2;Runx2,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,10,20,12393,ENSMUSG00000039153,conserved gene and region,17,44724704,44724890,187,*,187,14,0.534759358,1.074712644,0.07486631,2.85E-09,CpGisland,TRUE,U11,Tr-P
22070,cg18886630,-0.000000279,0.00000793,-0.035179145,0.971959533,loss,ns,0.00000235,0.0000135,0.174106095,0.861895725,pos,ns,0.022844705,0.003947388,5.787296695,1.75E-08,pos,ns,7.75682956,-0.000734485,0.00013575,-5.410558051,0.000000126,neg,yes,0.444202569,Gm18907,Gm18907_Intergenic_downstream,7,110706922,110706971,110706922,110706923,50,-,CGGGTAGATGCGTATTATTGCAATGTGTTTATCTAGGAAACCAGAGCCCA,Distal Intergenic,7,110712041,110713397,1357,2,Gm18907-201,6475,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,100417932,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24730,cg21102477,0.000027,0.0000045,6.005082444,5.35E-09,gain,yes,-0.00000133,0.00000764,-0.174090172,0.861908229,neg,ns,0.002852849,0.002238598,1.274391077,0.203479321,pos,ns,0.69147972,0.00000934,0.000077,0.121372928,0.903474293,pos,ns,0.074275375,Csmd2,Csmd2_Exon,4,127987887,127987936,127987887,127987888,50,-,CGGACACTTGGTTCATTCCAGCCGCAGAAGCTCAGGGCTCCCGCGTACCG,Promoter (<=1kb),4,127987857,128339657,351801,1,Csmd2-201,30,Csmd2-201;Csmd2-203;Csmd2-205,Csmd2;Csmd2;Csmd2,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,9,329942,ENSMUSG00000028804,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
13674,cg17076630,0.0000609,0.0000118,5.153003341,0.000000457,gain,yes,0.00000349,0.0000201,0.174076532,0.861918939,pos,ns,0.025859359,0.005880492,4.397482154,0.0000151,pos,ns,4.821868947,0.00000833,0.00020223,0.041177302,0.967181056,pos,ns,0.343225122,Tcf12,Tcf12_Intron,9,71976297,71976346,71976297,71976298,50,-,CGGAGGGGGCAGGCTCTCTGGAGTCTTACTGGTCCATGCCTGATGACTTC,"Intron (Tcf12-202/Tcf12, intron 5 of 20)",9,71842688,72111847,269160,2,Tcf12-202,135501,Tcf12-202;Tcf12-201;Tcf12-220;Tcf12-221;Tcf12-218;Tcf12-216;Tcf12-208;Tcf12-210;Tcf12-214;Tcf12-205;Tcf12-203;Tcf12-211;Tcf12-204;Tcf12-212,Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,12,21406,ENSMUSG00000032228,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1895,cg08086221,0.000000231,0.00000187,0.123797356,0.901555954,gain,ns,-0.000000551,0.00000317,-0.173869677,0.862081367,neg,ns,0.001297097,0.000929167,1.39597866,0.163719838,pos,ns,0.785898693,-0.0000178,0.000032,-0.556105408,0.578539957,neg,ns,0.068887472,Bicra,Bicra_Promoter,7,16047838,16047887,16047838,16047839,50,-,CGCAGGTAGAGAGAGTTAAGAGATTTAAAGAGAAATTGCTACATTGTGAG,Promoter (<=1kb),7,15970672,16047921,77250,2,Bicra-204,34,Bicra-204,Bicra,0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,3,6,243842,ENSMUSG00000070808,conserved gene but different region,7,16047784,16047839,56,*,56,7,0.75,1.149560117,0.125,0.00000289,CpGisland,TRUE,U1,Pr-A
1681,cg18927470,-0.00000945,0.00000623,-1.517596538,0.130135245,loss,ns,-0.00000184,0.0000106,-0.173821885,0.862118896,neg,ns,-0.000113463,0.003098609,-0.036617247,0.970813759,neg,ns,0.012864077,0.0000447,0.000106561,0.419684736,0.67500648,pos,ns,0.870253928,Tle4,Tle4_Intergenic_downstream,19,14390359,14390408,14390359,14390360,50,+,CGAGCCAAGTTTTCATGTACTTGGATGGCTGACCTCCAACTTCTGACATA,Distal Intergenic,19,14543726,14595539,51814,2,Tle4-203,205131,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,29,21888,ENSMUSG00000024642,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4037,cg20402650,-0.0000829,0.000012,-6.92606879,2.50E-11,loss,yes,-0.00000353,0.0000203,-0.173723226,0.862196368,neg,ns,-0.013921524,0.005955893,-2.337437053,0.02005262,neg,ns,1.697828877,0.000146769,0.000204823,0.716565523,0.474181708,pos,ns,0.824315367,Gm45647,Gm45647_Intergenic_upstream,8,26622665,26622714,26622665,26622666,50,+,CGTAGGAAATTGGGTAATGAAAGCCGAGTCATACATTTCTGCTTTATGTT,Distal Intergenic,8,26780315,26780509,195,1,Gm45647-201,-157601,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,46,62,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9440,cg08823201,-0.0000334,0.00000896,-3.730524382,0.000227198,loss,ns,-0.00000264,0.0000152,-0.173571289,0.862315681,neg,ns,-0.005257219,0.004457806,-1.179328753,0.239171589,neg,ns,0.62129041,0.0000109,0.000153304,0.071303629,0.943202085,pos,ns,0.840820203,Gm48909,Gm48909_Intron,14,48750623,48750672,48750623,48750624,50,-,CGTGTCACCTGCAGACACAAAAATGTAGGCCTCACCACAGAAAATACAAT,"Intron (Otx2os1-206/Otx2os1-206, intron 2 of 4)",14,48695601,48695981,381,2,Gm48909-201,-54691,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,8,105245868,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26613,cg00857016,-0.000000419,0.00000104,-0.401447644,0.688367172,loss,ns,0.000000308,0.00000177,0.173549486,0.862332803,pos,ns,0.000292251,0.000519882,0.562148127,0.574421335,pos,ns,0.240769438,-0.0000198,0.0000179,-1.105558981,0.269774716,neg,ns,0.974757214,Pex14,Pex14_Intron,4,148988832,148988881,148988880,148988881,50,-,CTAACAGTAATGGAAAGCTGTGCTGTATTTCATTAGCCTGTATTATTCCG,"Intron (Pex14-201/Pex14, intron 3 of 8)",4,148960535,149099876,139342,2,Pex14-201,110995,Pex14-201;Pex14-202;Pex14-205;Pex14-203,Pex14;Pex14;Pex14;Pex14,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,41,48,56273,ENSMUSG00000028975,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7077,cg12797828,0.0000374,0.00000795,4.706375484,0.00000381,gain,ns,-0.00000234,0.0000135,-0.173278414,0.862545677,neg,ns,0.015970588,0.003958838,4.034159949,0.0000691,pos,ns,4.160718176,-0.000639522,0.000136144,-4.69739147,0.00000397,neg,ns,0.155855259,Zfpm2,Zfpm2_Intron,15,40825433,40825482,40825433,40825434,50,-,CGGGGCTCTTCGGCTTCATTTCATGCTTGATTTACTTTAATTTGTCTGAT,"Intron (Zfpm2-202/Zfpm2, intron 3 of 3)",15,40655035,40872723,217689,1,Zfpm2-202,170398,Zfpm2-202;Zfpm2-201;Zfpm2-203,Zfpm2;Zfpm2;Zfpm2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,41,22762,ENSMUSG00000022306,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19111,cg16103085,0.0000428,0.000017,2.513951682,0.012445108,gain,ns,-0.00000501,0.0000289,-0.173260047,0.862560101,neg,ns,0.030627756,0.008466919,3.617343635,0.000347369,pos,ns,3.459209372,-0.000827958,0.000291177,-2.843490621,0.00475863,neg,ns,0.360098382,Gm49017,Gm49017_Intergenic_downstream,14,98472095,98472144,98472095,98472096,50,+,CGATGATACAGATTTGATTAGCTCTTAAGCAAAACAAGTTCAGCCAGGCT,Distal Intergenic,14,98519416,98519700,285,2,Gm49017-201,47556,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,11,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2099,cg10972783,0.0000705,0.00000907,7.777608075,1.10E-13,gain,yes,-0.00000267,0.0000154,-0.173233034,0.862581315,neg,ns,0.002377073,0.004513676,0.526637857,0.598821707,pos,ns,0.222702465,0.000112709,0.000155225,0.726097983,0.46832655,pos,ns,0.123197302,Skida1,Skida1_fiveUTR,2,18048432,18048481,18048432,18048433,50,-,CGTGTGTCTCAAGGCATCCTGCTAATAAAATAACAAAGACTGTTATTCCC,Promoter (<=1kb),2,18045253,18048449,3197,2,Skida1-201,0,Skida1-205;Skida1-202;Skida1-201;Skida1-203;Skida1-204,Skida1;Skida1;Skida1;Skida1;Skida1,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,8,31,72668,ENSMUSG00000054074,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
18069,cg02971933,-0.00000541,0.00000956,-0.566531841,0.57144222,loss,ns,-0.00000281,0.0000162,-0.173208941,0.862600236,neg,ns,-0.013940528,0.004757111,-2.930460997,0.003636038,neg,ns,2.439371537,0.000266246,0.000163597,1.627455265,0.104656366,pos,ns,0.788663941,Pola1,Pola1_Intron,X,93497614,93497663,93497662,93497663,50,-,ATTAGCAAATCTATCCAGTAATTCAACACCTATTATATAAAATGCCTTCG,"Intron (Pola1-201/Pola1, intron 26 of 36)",20,93304767,93632155,327389,2,Pola1-201,134492,Pola1-201,Pola1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,59,62,18968,ENSMUSG00000006678,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14415,cg14037076,-0.00000498,0.00000143,-3.47622801,0.000581109,loss,ns,-0.000000422,0.00000243,-0.173149455,0.862646953,neg,ns,-0.001573542,0.000713179,-2.206377387,0.028090589,neg,ns,1.551439148,0.000047,0.0000245,1.917162879,0.056136178,pos,ns,0.959303058,Rasgrp3,Rasgrp3_Exon,17,75503120,75503169,75503168,75503169,50,+,AATGAAATGACAGAGTTGGTCTCCTCCAACGGCAATTACTGCAATTACCG,"Exon (Rasgrp3-202/Rasgrp3, exon 9 of 17)",17,75435926,75529054,93129,1,Rasgrp3-202,67194,Rasgrp3-202;Rasgrp3-201,Rasgrp3;Rasgrp3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,240168,ENSMUSG00000071042,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12253,cg17946107,-0.0000078,0.00000848,-0.919469754,0.358564811,loss,ns,-0.00000249,0.0000144,-0.172962086,0.862794104,neg,ns,-0.008003432,0.004220125,-1.896491772,0.058824559,neg,ns,1.230441322,0.0000736,0.00014513,0.507105619,0.612441247,pos,ns,0.768779772,Ptch1,Ptch1_Intron,13,63571238,63571287,63571286,63571287,50,+,GTAAAACAATTCCAGCTTATTGTGTGTCTTTCTTTCATACTGCTAATCCG,"Intron (Ptch1-204/Ptch1, intron 1 of 23)",13,63508329,63573460,65132,2,Ptch1-204,2173,Ptch1-204;Ptch1-205,Ptch1;Ptch1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,36,19206,ENSMUSG00000021466,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
8190,cg26343215,0.00000183,0.000000904,2.01790343,0.044462513,gain,ns,-0.000000265,0.00000154,-0.172695757,0.863003275,neg,ns,-0.001053752,0.000450177,-2.340749942,0.019878731,neg,ns,1.701611334,0.0000246,0.0000155,1.586978765,0.11353689,pos,ns,0.021557279,Pax2,Pax2_threeUTR,19,44837743,44837792,44837743,44837744,50,+,CGATGCGCCCTGCATGTCTCCTCACCCGTGGATCGTGACGACTCGAAATA,3' UTR,19,44756045,44837851,81807,1,Pax2-203,81698,Pax2-203;Pax2-201,Pax2;Pax2,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,166,18504,ENSMUSG00000004231,conserved gene and region,19,44837734,44837787,54,*,54,7,0.648148148,1.243421053,0.12962963,0.00000224,CpGisland,TRUE,U3,Pr-B
16378,cg05019226,-0.0000329,0.00000572,-5.746257642,2.18E-08,loss,yes,0.00000168,0.00000972,0.172682687,0.86301354,pos,ns,-0.000559096,0.002848317,-0.196290031,0.844511777,neg,ns,0.073394289,0.000115838,0.000098,1.182585889,0.237879527,pos,ns,0.92483644,Nfix,Nfix_Intron,8,84780149,84780198,84780149,84780150,50,-,CGCTCTGTTGAATCACGGTTCACTAGTCCTTTCAGTTTGCTGTGGGTGGA,"Intron (Nfix-201/Nfix, intron 1 of 8)",8,84708614,84800140,91527,2,Nfix-201,19942,Nfix-201;Nfix-202;Nfix-205,Nfix;Nfix;Nfix,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,49,18032,ENSMUSG00000001911,conserved gene and region,8,84779926,84780165,240,*,240,13,0.554166667,0.771895101,0.054166667,0.000000544,CpGisland,TRUE,U13,Hc-P
26818,cg01847946,-0.00000947,0.00000725,-1.304808142,0.192925948,loss,ns,0.00000213,0.0000123,0.172485036,0.863168779,pos,ns,0.000502449,0.003610527,0.139162104,0.889412416,pos,ns,0.050896812,-0.0000992,0.000124166,-0.798596545,0.425135775,neg,ns,0.477464285,H13,H13_Exon,2,152703998,152704047,152703998,152703999,50,+,CGAGTCCTCGGCGGAAATCCTGCCTCATACCCCGAGGCTCACCCACTTCC,"Exon (H13-202/H13, exon 12 of 13)",2,152669461,152708670,39210,1,H13-204,34537,H13-204;H13-202;H13-201,H13;H13;H13,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,4,14950,ENSMUSG00000019188,mapped to different genes,2,152703968,152704170,203,*,203,15,0.650246305,0.755208333,0.073891626,8.05E-10,CpGisland,TRUE,U10,Tr-S
13172,cg24857706,-0.0000316,0.0000105,-3.006269872,0.002860934,loss,ns,0.00000308,0.0000179,0.17236927,0.863259706,pos,ns,-0.008120391,0.005234675,-1.551269275,0.121857443,neg,ns,0.914147938,-0.0000385,0.00018002,-0.2136393,0.830968789,neg,ns,0.852949887,Gm11221,Gm11221_Intergenic_upstream,4,69632723,69632772,69632723,69632724,50,-,CGACTCAGGGAAATTAGGGCCTCCCTACCTTGGAGGCATCGAGAGACAGT,Distal Intergenic,4,69691978,69692574,597,1,Gm11221-201,-59255,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,4,622491,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26179,cg06684308,0.00000187,0.000002,0.934993192,0.350519552,gain,ns,0.000000586,0.0000034,0.172203675,0.863389775,pos,ns,0.000877364,0.00099738,0.879668518,0.379720298,pos,ns,0.420536187,-0.00000485,0.0000343,-0.141352591,0.887683216,neg,ns,0.946020161,Lmo4,Lmo4_Intergenic_upstream,3,144227829,144227878,144227877,144227878,50,-,GAGGTCATCAAAATGAACACACTCGTTGTGTTTATTTGAATCTCACATCG,Distal Intergenic,3,144188530,144205220,16691,2,Lmo4-201,-22658,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,54,16911,ENSMUSG00000028266,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12400,cg18760313,0.0000186,0.00000374,4.973804372,0.00000109,gain,yes,-0.00000109,0.00000635,-0.171952369,0.863587172,neg,ns,0.005755428,0.001859374,3.095358515,0.002145154,pos,ns,2.668541567,-0.000136538,0.0000639,-2.135289262,0.033521013,neg,ns,0.057335557,Fign,Fign_Promoter,2,64097227,64097276,64097275,64097276,50,+,TAGGATCAGTGGATTGTATATACCATTAAATTATACATCTTTCTCTCCCG,Promoter (<=1kb),2,63971507,64098012,126506,2,Fign-203,736,Fign-203;Fign-201;Fign-202;Fign-204,Fign;Fign;Fign;Fign,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,12,84,60344,ENSMUSG00000075324,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
2923,cg12205204,-0.00000734,0.00000659,-1.113632256,0.266299703,loss,ns,0.00000193,0.0000112,0.171924079,0.863609395,pos,ns,-0.004012031,0.003281828,-1.222498974,0.22244763,neg,ns,0.652772216,0.000137617,0.000112862,1.219338108,0.223642832,pos,ns,0.899413764,Ehbp1,Ehbp1_Intron,11,22058422,22058471,22058470,22058471,50,+,AGGCCAGCTTCATTCTGCATTAAATCCACTGCAGAAAGCTAAATTGAACG,"Intron (Ehbp1-201/Ehbp1, intron 17 of 23)",11,22005828,22285838,280011,2,Ehbp1-201,227367,Ehbp1-201;Ehbp1-202;Ehbp1-207,Ehbp1;Ehbp1;Ehbp1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,34,45,216565,ENSMUSG00000042302,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20930,cg06121619,0.00000547,0.00000278,1.970939647,0.049620091,gain,ns,-0.000000811,0.00000472,-0.171810903,0.863698295,neg,ns,-0.001134293,0.001382215,-0.820634443,0.412485104,neg,ns,0.38459173,0.0000751,0.0000475,1.579898214,0.11514995,pos,ns,0.928086206,Elp4,Elp4_Intron,2,105719983,105720032,105719983,105719984,50,-,CGATTTAAGCTGTGTAATTAAATTTCACACAATATGAAGCAGCAAATGAC,"Intron (Elp4-202/Elp4, intron 9 of 9)",2,105701027,105904564,203538,2,Elp4-202,184532,Elp4-202,Elp4,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,16,77766,ENSMUSG00000027167,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13561,cg15905834,-0.0000114,0.00000635,-1.801551602,0.072587522,loss,ns,0.00000185,0.0000108,0.171797437,0.863708874,pos,ns,-0.001785356,0.003162529,-0.564534105,0.572798939,neg,ns,0.241997795,0.00000385,0.000108759,0.035390275,0.971791317,pos,ns,0.87639337,Gm10172,Gm10172_Intron,7,71349248,71349297,71349248,71349249,50,+,CGGAGCAAATTACAAGTCTGAACAGATATATAGCTTTTGCTAAAAGGGAC,"Intron (Gm29328-206/Gm29328-206, intron 1 of 3)",7,71332363,71332921,559,2,Gm10172-201,-16327,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,31,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25274,cg02379339,-0.0000198,0.00000678,-2.925506117,0.00369284,loss,ns,0.00000198,0.0000115,0.171788377,0.86371599,pos,ns,-0.001541122,0.003373041,-0.456893959,0.648067253,neg,ns,0.188379923,0.0000104,0.000115999,0.08951381,0.928731383,pos,ns,0.775844956,Myog,Myog_Promoter,1,134289934,134289983,134289934,134289935,50,+,CGTTGGCTATATTTATCTCTGGTTCCATGCCAGCGGGGAGGGTTTAAATG,Promoter (<=1kb),1,134289989,134292548,2560,1,Myog-201,-6,Myog-201,Myog,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,2,17928,ENSMUSG00000026459,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2246,cg03883083,-0.0000428,0.00000812,-5.268995236,0.000000257,loss,yes,-0.00000237,0.0000138,-0.171765292,0.863734125,neg,ns,-0.005519304,0.004041233,-1.365747504,0.173008297,neg,ns,0.761933068,-0.000233627,0.000138978,-1.681042092,0.093761927,neg,ns,0.689513629,Gm12024,Gm12024_Exon,11,18752608,18752657,18752608,18752609,50,+,CGTCCCCCTGATGGCTTCTCCTCTGATAATAAGAAGTGCAGGGCCTCTGA,"Exon (Gm28401-202/Gm28401-202, exon 3 of 3)",11,18577227,18578479,1253,2,Gm12024-201,-174129,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,12,100417654,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15435,cg11138976,-0.0000349,0.00000802,-4.343094524,0.0000191,loss,ns,-0.00000234,0.0000136,-0.171629565,0.863840744,neg,ns,-0.00474637,0.003993904,-1.18840343,0.235584124,neg,ns,0.627853979,0.0000676,0.00013735,0.492485975,0.622724444,pos,ns,0.779054422,Gm43901,Gm43901_Intergenic_downstream,6,80885610,80885659,80885610,80885611,50,-,CGTGGCTGTGTCCTGCCGGAAAGCCATTGCATGTGTTATCACTGCCAGAA,Distal Intergenic,6,81420806,81421258,453,2,Gm43901-201,535648,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18291,cg01311296,0.00000253,0.00000431,0.585925156,0.558352147,gain,ns,-0.00000126,0.00000733,-0.171622052,0.863846645,neg,ns,0.004017903,0.002146548,1.871797674,0.062176109,pos,ns,1.206376459,-0.000159516,0.0000738,-2.16088486,0.031469874,neg,ns,0.918012251,Dyrk1a,Dyrk1a_threeUTR,16,94694735,94694784,94694783,94694784,50,-,TGTGTTCAGATTGTAAGATCTAGTCCGGACTTGCTGTGTATATTGTAACG,3' UTR,16,94570010,94695067,125058,1,Dyrk1a-202,124725,Dyrk1a-202;Dyrk1a-203;Dyrk1a-201,Dyrk1a;Dyrk1a;Dyrk1a,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,14,13548,ENSMUSG00000022897,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
6564,cg27166817,-0.0000425,0.00000977,-4.354013747,0.0000182,loss,ns,0.00000285,0.0000166,0.17154146,0.863909955,pos,ns,-0.006798753,0.004862148,-1.398302484,0.163021787,neg,ns,0.78775435,-0.000105962,0.000167209,-0.63371097,0.526736746,neg,ns,0.701292578,Zfp536,Zfp536_Intron,7,37743630,37743679,37743630,37743631,50,-,CGCCAGGAGTGTCTCAAGGAGCAGATGGGTGCTACTTTGTTTATAAAAGA,"Intron (Zfp536-202/Zfp536, intron 1 of 6)",7,37479104,37769624,290521,2,Zfp536-202,25945,Zfp536-202;Zfp536-201;Zfp536-203;Zfp536-206;Zfp536-209;Zfp536-208;Zfp536-205;Zfp536-207,Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,73,112,243937,ENSMUSG00000043456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13750,cg12647038,-0.00000987,0.00000235,-4.205019668,0.0000342,loss,ns,0.000000684,0.00000399,0.171528873,0.863919843,pos,ns,0.000387635,0.001167769,0.331945111,0.740155023,pos,ns,0.130677309,0.0000405,0.0000402,1.009317045,0.313609758,pos,ns,0.964279666,Map3k20,Map3k20_Intron,2,72379019,72379068,72379019,72379020,50,+,CGTCCAAGGTAGGGGAACAGTTTAACTCCATCTCCTGCGTTTAGGACATC,"Intron (Map3k20-201/Map3k20, intron 8 of 19)",2,72285637,72442610,156974,1,Map3k20-201,93382,Map3k20-201;Map3k20-204;Map3k20-202;Map3k20-206,Map3k20;Map3k20;Map3k20;Map3k20,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,14,18,65964,ENSMUSG00000004085,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23446,cg16384076,-0.000000915,0.000000798,-1.146393765,0.252516364,loss,ns,-0.000000232,0.00000136,-0.171515967,0.863929981,neg,ns,-0.000992386,0.000397048,-2.499406611,0.012957002,neg,ns,1.887495468,0.0000336,0.0000137,2.464104952,0.014278008,pos,ns,0.987801542,Eomes,Eomes_Exon,9,118484313,118484362,118484361,118484362,50,+,TCCCACGGATTCTCCTAGATCCCATCAGATTGTCCCTGGAGGTCGGTACG,"Exon (Eomes-202/Eomes, exon 6 of 6)",9,118478212,118485366,7155,1,Eomes-202,6101,Eomes-202;Eomes-201;Eomes-203,Eomes;Eomes;Eomes,0;0;5452,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,8,13813,ENSMUSG00000032446,conserved gene and region,9,118484282,118484551,270,*,270,14,0.555555556,0.704041721,0.051851852,0.000000295,CpGisland,TRUE,U13,Hc-P
23911,cg08592844,0.0000187,0.00000466,4.013085028,0.0000752,gain,ns,0.00000136,0.00000791,0.171448583,0.863982916,pos,ns,0.006403817,0.002318645,2.761879427,0.006089852,pos,ns,2.215393256,-0.000140637,0.0000797,-1.763744201,0.078760049,neg,ns,0.073979764,Insig2,Insig2_Intron,1,121097230,121097279,121097230,121097231,50,+,CGGGCCCGATTTGCATTTTAATGGAAGTAGTTTATAGACTTCTCCGCTGC,"Intron (Celrr-202/Celrr-202, intron 1 of 4)",1,121305893,121307318,1426,2,Insig2-206,210039,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,17,72999,ENSMUSG00000003721,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
8934,cg14558239,-0.000000364,0.00000314,-0.115854894,0.907842556,loss,ns,-0.000000914,0.00000533,-0.171439495,0.863990055,neg,ns,0.00000287,0.001562435,0.001839587,0.998533406,pos,ns,0.000637401,-0.0000831,0.0000537,-1.546416722,0.123024184,neg,ns,0.917498791,Cuedc2,Cuedc2_Exon,19,46330713,46330762,46330761,46330762,50,-,GGCTTGAGGTTGATGTATGTGGCCTTCATCTCCTCGGCCTCAGGGTTCCG,"Exon (Cuedc2-203/Cuedc2, exon 9 of 9)",19,46329812,46338620,8809,2,Cuedc2-203,7858,Cuedc2-203;Cuedc2-201;Cuedc2-202;Cuedc2-204;Cuedc2-205;Cuedc2-206;Cuedc2-211;Cuedc2-213;Cuedc2-208;Cuedc2-214;Cuedc2-212;Cuedc2-210;Cuedc2-207;Cuedc2-209;Fbxl15-201;Fbxl15-202;Psd-201;Psd-202;Psd-207;Psd-213;Psd-203;Psd-204;Psd-206;Psd-209,Cuedc2;Cuedc2;Cuedc2;Cuedc2;Cuedc2;Cuedc2;Cuedc2;Cuedc2;Cuedc2;Cuedc2;Cuedc2;Cuedc2;Cuedc2;Cuedc2;Fbxl15;Fbxl15;Psd;Psd;Psd;Psd;Psd;Psd;Psd;Psd,0;0;0;0;0;0;0;1294;7864;2017;2079;7865;7940;7868;2529;2526;0;0;0;-4207;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,Exon,2,2,67116,ENSMUSG00000036748,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17095,cg18750950,0.00000811,0.0000022,3.681092771,0.000273841,gain,ns,0.000000642,0.00000374,0.171320257,0.864083726,pos,ns,0.000379923,0.001097066,0.346308322,0.729345944,pos,ns,0.137066428,-0.0000253,0.0000377,-0.670350668,0.503133345,neg,ns,0.965645872,Msi2,Msi2_Exon,11,88363553,88363602,88363553,88363554,50,+,CGCAGCCCCAACCAAGCAAGAGAAAAGACAACAGAAATATGACTGCTCAC,"Exon (Gm15893-201/Gm15893-201, exon 3 of 3)",11,88339382,88718229,378848,2,Msi2-203,354627,Msi2-203;Msi2-201;Msi2-207,Msi2;Msi2;Msi2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,36,76626,ENSMUSG00000069769,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4608,cg16034763,-0.000005,0.00000372,-1.343926623,0.179954875,loss,ns,-0.00000108,0.00000632,-0.171275809,0.864118645,neg,ns,-0.001232335,0.001850889,-0.665807235,0.506029434,neg,ns,0.295824221,-0.0000176,0.0000637,-0.275912024,0.782799477,neg,ns,0.935963972,Ntm,Ntm_Intron,9,29939634,29939683,29939634,29939635,50,-,CGGCCTTATTAATGGAATTGTACATCTAGGATTAATCGGCTTGCATTGGC,"Intron (Ntm-201/Ntm, intron 1 of 7)",9,28994750,29963129,968380,2,Ntm-201,23446,Ntm-201;Ntm-204;Ntm-210;Ntm-207;Ntm-209,Ntm;Ntm;Ntm;Ntm;Ntm,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,27,32,235106,ENSMUSG00000059974,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2233,cg06765617,-0.000000942,0.00000216,-0.436747239,0.662598714,loss,ns,0.000000627,0.00000366,0.171227124,0.864156892,pos,ns,-0.0000456,0.001073262,-0.042470556,0.966150925,neg,ns,0.014955026,-0.00000936,0.0000369,-0.253723229,0.799877581,neg,ns,0.952853563,Gm30341,Gm30341_Intergenic_upstream,3,18714383,18714432,18714383,18714384,50,-,CGAATTGCTCGGGTCTGCTTACTTTATTATCTAGATCACAAACGTAATGA,Distal Intergenic,3,18753077,18753365,289,1,Gm30341-201,-38694,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,17,23,102632201,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17929,cg21075112,-0.0000147,0.0000112,-1.312328577,0.190380125,loss,ns,0.00000327,0.0000191,0.17106427,0.864284832,pos,ns,-0.000981273,0.005593354,-0.17543559,0.860851912,neg,ns,0.065071551,-0.00014028,0.000192355,-0.729279075,0.466381605,neg,ns,0.345796656,Irx6,Irx6_Intergenic_upstream,8,92618348,92618397,92618348,92618349,50,+,CGTCATGAAGCTTTCAAAACAATTTATGCAAACAAACCTCAAGTGGGGCT,Distal Intergenic,8,92674288,92680956,6669,1,Irx6-201,-55891,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,5,64379,ENSMUSG00000031738,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18091,cg03198237,-0.0000698,0.0000116,-6.039219494,4.43E-09,loss,yes,0.00000336,0.0000196,0.171042693,0.864301783,pos,ns,-0.004628874,0.005754701,-0.804363906,0.421803256,neg,ns,0.374890072,0.0000616,0.000197904,0.311282577,0.755795034,pos,ns,0.647423795,Ext2,Ext2_Intron,2,93779853,93779902,93779853,93779854,50,+,CGCCTGCCTGAGCTCCTGGACTCAGCAGAAAGGCCCATATAGCTGTCAGC,"Intron (Ext2-212/Ext2, intron 8 of 11)",2,93661028,93822549,161522,2,Ext2-212,42647,Ext2-212;Ext2-201;Ext2-205;Ext2-203;Ext2-210,Ext2;Ext2;Ext2;Ext2;Ext2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,14043,ENSMUSG00000027198,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13070,cg01670963,-0.000013,0.0000154,-0.847770646,0.397219784,loss,ns,-0.00000446,0.0000261,-0.171004595,0.864331714,neg,ns,0.04355024,0.007645022,5.696549032,2.84E-08,pos,ns,7.546446846,-0.001473663,0.000262912,-5.605164121,0.000000046,neg,yes,0.533479592,Chd3,Chd3_Exon,11,69361142,69361191,69361190,69361191,50,-,AATAATTTCCCCACCCTGCTGGCACACCTCACAGTAATCCTGGTGATCCG,"Exon (Chd3-202/Chd3, exon 8 of 40)",11,69343273,69369406,26134,2,Chd3-202,8215,Chd3-202;Chd3-201;Chd3-204;Chd3-209;Chd3-210;Chd3-207,Chd3;Chd3;Chd3;Chd3;Chd3;Chd3,0;0;0;-4532;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,22,26,216848,ENSMUSG00000018474,conserved gene and region,11,69361083,69361220,138,*,138,10,0.608695652,0.784090909,0.072463768,0.00000132,CpGisland,TRUE,U10,Tr-S
14642,cg11033865,-0.0000467,0.00000761,-6.130111133,2.67E-09,loss,yes,-0.00000221,0.0000129,-0.170986656,0.864345807,neg,ns,-0.004139032,0.003789406,-1.09226395,0.275565224,neg,ns,0.559775591,0.0000245,0.000130317,0.187965012,0.851027055,pos,ns,0.88892336,Rbfox2,Rbfox2_threeUTR,15,77079300,77079349,77079348,77079349,50,-,GATGCTTCTCTGGAGTTAGCAGGGAAACAGGACCCTGGGCAAGCAGCTCG,3' UTR,15,77078990,77306928,227939,2,Rbfox2-204,227579,Rbfox2-204;Rbfox2-203;Rbfox2-202;Rbfox2-206;Rbfox2-208;Rbfox2-209;Rbfox2-201;Rbfox2-211;Rbfox2-215;Rbfox2-207,Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2;Rbfox2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,20,93686,ENSMUSG00000033565,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
324,cg23079556,-0.000005,0.00000487,-1.026994549,0.3052237,loss,ns,-0.00000141,0.00000827,-0.170896536,0.86441661,neg,ns,-0.006079393,0.002423625,-2.508388725,0.012638724,neg,ns,1.89829676,0.00013436,0.0000833,1.612029003,0.107973208,pos,ns,0.913481712,Klhl29,Klhl29_Intron,12,5119111,5119160,5119111,5119112,50,+,CGTTCCGATGGGAGGTGATTAACTCTATTAAGTGGCATTACGGATCTTCC,"Intron (Klhl29-201/Klhl29, intron 5 of 13)",12,5077472,5375682,298211,2,Klhl29-201,256522,Klhl29-201;Klhl29-202,Klhl29;Klhl29,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,23,208439,ENSMUSG00000020627,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6158,cg01469140,0.0000236,0.00000644,3.660951326,0.000295318,gain,ns,0.00000187,0.0000109,0.170775685,0.864511557,pos,ns,0.008746517,0.003203586,2.730227378,0.006691053,pos,ns,2.174505528,-0.000172044,0.000110171,-1.561604076,0.119401542,neg,ns,0.111447497,Nrg2,Nrg2_Intron,18,36195933,36195982,36195933,36195934,50,+,CGACCATTCCCTAGGAGAACTTGTAAGCGGAGGCCTTCACAGCCTGGGAG,"Intron (Nrg2-203/Nrg2, intron 1 of 9)",18,36017652,36197380,179729,2,Nrg2-203,1398,Nrg2-203;Nrg2-201,Nrg2;Nrg2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,20,100042150,ENSMUSG00000060275,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
592,cg04796803,0.000227128,0.0000134,16.92376049,5.82E-46,gain,yes,0.00000389,0.0000228,0.170680295,0.864586502,pos,ns,0.016299561,0.006679588,2.440204724,0.015238851,pos,ns,1.817047778,-0.0000776,0.00022971,-0.337626365,0.735873274,neg,ns,0.420782773,Macrod1,Macrod1_Intron,19,7143782,7143831,7143782,7143783,50,+,CGTGATCGCCAGATTACTCCAAATGCATTTATTACAGGGGTTAGAAGCGG,"Intron (Macrod1-201/Macrod1, intron 3 of 10)",19,7056810,7198057,141248,1,Macrod1-201,86972,Macrod1-201,Macrod1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,11,107227,ENSMUSG00000036278,conserved gene and region,19,7143705,7143789,85,*,85,8,0.611764706,1.011904762,0.094117647,0.00000348,CpGisland,TRUE,NA,NRS
7193,cg03920533,0.0000395,0.00000767,5.148104808,0.000000468,gain,yes,-0.00000222,0.000013,-0.170644511,0.864614617,neg,ns,0.003100036,0.003815387,0.812508956,0.417123164,pos,ns,0.379735692,0.000241941,0.000131211,1.843908254,0.066150693,pos,ns,0.487675864,Gm8707,Gm8707_Intron,9,41583982,41584031,41584030,41584031,50,+,ACATAATTGGTGGTTGGTTCAATCACTACCAGTCTAGACTAGCCCAGACG,"Intron (Mir100hg-214/Mir100hg-214, intron 4 of 4)",9,41651893,41654554,2662,1,Gm8707-202,-67862,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,12,667566,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
18245,cg23496355,0.0000289,0.00000385,7.495580561,6.97E-13,gain,yes,-0.00000112,0.00000655,-0.170578511,0.864666472,neg,ns,0.007749942,0.001917977,4.040684984,0.0000673,pos,ns,4.172187422,-0.000214433,0.000066,-3.251001881,0.001276546,neg,ns,0.1085585,Ap3b1,Ap3b1_Intergenic_downstream,13,94595837,94595886,94595837,94595838,50,-,CGGAGCATGCCGTTTGGTTCAGAAAGGAGTCATTTTGCACACTCGCCTCA,Distal Intergenic,13,94542303,94547867,5565,1,Ap3b1-202,53583,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,33,55,11774,ENSMUSG00000021686,mapped to different genes,13,94595837,94596306,470,*,470,35,0.640425532,0.726333451,0.074468085,2.54E-22,CpGisland,TRUE,U13,Hc-P
15243,cg10989210,-0.000031,0.00000873,-3.545622325,0.000452127,loss,ns,-0.00000253,0.0000148,-0.170541351,0.864695669,neg,ns,-0.005352899,0.004345561,-1.231808679,0.218954116,neg,ns,0.659646886,-0.00000269,0.000149443,-0.017988824,0.985659342,neg,ns,0.843094827,Pde1a,Pde1a_Intron,2,79910498,79910547,79910498,79910499,50,+,CGGAAGGAGAGGTCATGGGATTTTGACTCTTACAATCATATGTCAGTGAA,"Intron (Pde1a-206/Pde1a, intron 2 of 14)",2,79834453,80128939,294487,2,Pde1a-206,218392,Pde1a-206;Pde1a-205;Pde1a-210;Pde1a-204;Pde1a-201;Pde1a-202;Pde1a-203;Pde1a-208;Pde1a-209;Pde1a-207,Pde1a;Pde1a;Pde1a;Pde1a;Pde1a;Pde1a;Pde1a;Pde1a;Pde1a;Pde1a,0;0;0;0;-2099;-2065;-2065;0;0;218911,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,18573,ENSMUSG00000059173,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10514,cg05495985,0.0000115,0.00000392,2.924864013,0.003700259,gain,ns,-0.00000114,0.00000666,-0.170512598,0.864718259,neg,ns,-0.00136249,0.001950687,-0.698467029,0.485408799,neg,ns,0.313892356,0.0000717,0.0000671,1.068993177,0.285904422,pos,ns,0.907817184,Npas3,Npas3_Intron,12,53948152,53948201,53948152,53948153,50,-,CGAGAGCGCTGGTAATTAGATCTGCGAAGGATTTATTCTTTGCTGATTGG,"Intron (Npas3-204/Npas3, intron 5 of 10)",12,53248157,54069532,821376,1,Npas3-204,699995,Npas3-204;Npas3-201;Npas3-203,Npas3;Npas3;Npas3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,83,103,27386,ENSMUSG00000021010,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13217,cg20083419,0.0000251,0.0000043,5.84101184,1.31E-08,gain,yes,-0.00000124,0.0000073,-0.170397322,0.864808833,neg,ns,-0.000719733,0.002139302,-0.336433677,0.73677148,neg,ns,0.132667194,0.000133305,0.0000736,1.811936439,0.07096352,pos,ns,0.081517006,Foxb1,Foxb1_Promoter,9,69769799,69769848,69769847,69769848,50,-,ATGGCGATTTACTTTCCTCTGAGATCTATTCCACGGTGCAATTAGGAACG,Promoter (8-9kb),9,69757710,69760940,3231,2,Foxb1-201,-8908,NA,NA,NA,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,8,21,64290,ENSMUSG00000059246,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
564,cg15751165,0.0000245,0.00000432,5.688714088,2.96E-08,gain,yes,-0.00000125,0.00000733,-0.170329048,0.864862477,neg,ns,0.008829967,0.002147689,4.11138068,0.0000504,pos,ns,4.297405743,-0.000320028,0.0000739,-4.332974232,0.0000199,neg,ns,0.080662036,Dlx5,Dlx5_Exon,6,6879579,6879628,6879579,6879580,50,+,CGAGGTACTGAGTCTTCTGAAACCTTCTCTGTAATGCGGCCAGCTGAAAG,"Exon (Dlx5-202/Dlx5, exon 2 of 3)",6,6877805,6882068,4264,2,Dlx5-202,2440,Dlx5-202;Dlx5-201;Dlx5-203,Dlx5;Dlx5;Dlx5,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,6,13395,ENSMUSG00000029755,conserved gene and region,6,6879439,6879654,216,*,216,18,0.611111111,0.905871389,0.083333333,1.33E-12,CpGisland,TRUE,U13,Hc-P
18697,cg04041705,0.0000274,0.00000791,3.46076759,0.000614193,gain,ns,-0.00000229,0.0000134,-0.170316701,0.864872178,neg,ns,-0.005696296,0.00393446,-1.44779617,0.148684628,neg,ns,0.82773393,0.000402554,0.000135306,2.97514012,0.003158772,pos,ns,0.644107531,Skap1,Skap1_Intron,11,96743205,96743254,96743205,96743206,50,+,CGTCACATTGTTTCCAAATTGTGTTGTGGTGCCTGAGGCTGGTACTGCGG,"Intron (Skap1-204/Skap1, intron 11 of 12)",11,96464593,96758941,294349,1,Skap1-204,278612,Skap1-204;Skap1-203;Skap1-201,Skap1;Skap1;Skap1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,40,46,78473,ENSMUSG00000057058,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
16773,cg09341324,-0.0000164,0.00000441,-3.715144681,0.00024084,loss,ns,-0.00000127,0.00000749,-0.170260897,0.864916025,neg,ns,0.000496926,0.00219295,0.22660175,0.820882778,pos,ns,0.085718856,-0.000138836,0.0000754,-1.840952365,0.066584008,neg,ns,0.957180336,Rps6kb1,Rps6kb1_Exon,11,86519942,86519991,86519990,86519991,50,-,TAAATTAAATCCACGATGAAGGGATGCTTTACTTCCTCCAGAATATTCCG,"Exon (Rps6kb1-207/Rps6kb1, exon 5 of 15)",11,86498871,86544805,45935,2,Rps6kb1-207,24814,Rps6kb1-207;Rps6kb1-201;Rps6kb1-203;Rps6kb1-202;Rps6kb1-206,Rps6kb1;Rps6kb1;Rps6kb1;Rps6kb1;Rps6kb1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,4,72508,ENSMUSG00000020516,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12597,cg11461549,0.000000753,0.00000285,0.263711152,0.792177711,gain,ns,-0.000000825,0.00000485,-0.170222427,0.864946252,neg,ns,0.001218715,0.001420445,0.857980681,0.391565984,pos,ns,0.407195043,-0.0000558,0.0000488,-1.142289181,0.25421533,neg,ns,0.89014124,Zfp609,Zfp609_Exon,9,65704289,65704338,65704289,65704290,50,-,CGGACACGCTTGCTCCCTTTGGAGTCCTCTGAGCTAGAATTCAGCTCCAT,"Exon (Zfp609-201/Zfp609, exon 5 of 10)",9,65692391,65827564,135174,2,Zfp609-201,123226,Zfp609-201;Zfp609-202,Zfp609;Zfp609,0;-3145,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,10,214812,ENSMUSG00000040524,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15729,cg13793953,0.0000203,0.00000242,8.357717508,2.18E-15,gain,yes,-0.000000701,0.00000412,-0.170151509,0.865001976,neg,ns,0.002195953,0.001206147,1.820634998,0.069626368,pos,ns,1.157226256,0.0000351,0.0000415,0.846489636,0.397932619,pos,ns,0.101418449,Chst11,Chst11_Exon,10,82985910,82985959,82985910,82985911,50,+,CGGATGGTGCTGGCCACTTGCTTGGGATCCTTTATCCTGGTCATCTTCTA,Promoter (<=1kb),10,82985498,83195900,210403,1,Chst11-201,412,Chst11-201,Chst11,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,6,58250,ENSMUSG00000034612,conserved gene and region,10,82985505,82985934,430,*,430,47,0.706976744,0.874740305,0.109302326,6.34E-38,CpGisland,TRUE,NA,NRS
27546,cg03990706,-0.0000191,0.00000639,-2.991713955,0.002996838,loss,ns,-0.00000185,0.0000109,-0.170096112,0.865045504,neg,ns,-0.00903048,0.003182653,-2.837406311,0.004847891,neg,ns,2.314447168,0.0000973,0.000109451,0.88896462,0.374711373,pos,ns,0.750227678,Tshz2,Tshz2_Intron,2,169783111,169783160,169783111,169783112,50,-,CGTGTTAATGTGCACTTAATGAGAAATTCTTGTCTTGCTTGTAAATCCTG,"Intron (Tshz2-202/Tshz2, intron 1 of 2)",2,169633013,169913093,280081,1,Tshz2-202,150098,Tshz2-202;Tshz2-201,Tshz2;Tshz2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,21,30,228911,ENSMUSG00000047907,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9379,cg22100382,-0.0000297,0.00000854,-3.472136198,0.000589699,loss,ns,0.00000247,0.0000145,0.170093668,0.865047424,pos,ns,-0.010602315,0.004252789,-2.493026535,0.013187386,neg,ns,1.879841292,0.000276389,0.000146253,1.889797618,0.059717866,pos,ns,0.819441576,Gm13472,Gm13472_Intergenic_downstream,2,48481517,48481566,48481565,48481566,50,+,TTAAGCACATTTACATTTGGTTCTTAAAATCCAAAATAGCCCATTTCACG,Distal Intergenic,2,48388037,48388350,314,1,Gm13472-201,93480,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,4,108168751,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15819,cg02064459,-0.0000042,0.0000128,-0.327709482,0.74335254,loss,ns,-0.00000371,0.0000218,-0.170086988,0.865052673,neg,ns,-0.000550771,0.006386081,-0.086245526,0.931326919,neg,ns,0.030897844,-0.00019294,0.000219617,-0.87853244,0.380335264,neg,ns,0.598390715,Mef2c,Mef2c_fiveUTR,13,83575541,83575590,83575541,83575542,50,-,CGAATGCAGGAATTTGGGAACTGAGCTGTGCAAGTGCTGAAGAAGGAGAT,5' UTR,13,83504034,83663343,159310,1,Mef2c-218,71507,Mef2c-218;Mef2c-228;Mef2c-221;Mef2c-229;Mef2c-201;Mef2c-202;Mef2c-207;Mef2c-231;Mef2c-222;Mef2c-223;Mef2c-227;Mef2c-217;Mef2c-213;Mef2c-214;Mef2c-215;Mef2c-226;Mef2c-216;Mef2c-208;Mef2c-206;Mef2c-212;Mef2c-210;Mef2c-203;Mef2c-205;Mef2c-224;Mef2c-204;Mef2c-219;Mef2c-225,Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,9,41,17260,ENSMUSG00000005583,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25868,cg22871837,-0.0000155,0.0000104,-1.496610583,0.135512018,loss,ns,0.000003,0.0000176,0.170056575,0.86507657,pos,ns,-0.001444449,0.005167898,-0.279504176,0.780044324,neg,ns,0.107880719,0.00000572,0.000177724,0.032191044,0.974340414,pos,ns,0.209446813,Pax7,Pax7_Intron,4,139826027,139826076,139826027,139826028,50,+,CGGACTCAGGGAGGGATCTCTCTTTAGTGCTTAAAGAGGAGAGCTCTTAA,"Intron (Pax7-201/Pax7, intron 4 of 8)",4,139737062,139833528,96467,2,Pax7-201,7452,Pax7-201;Pax7-202,Pax7;Pax7,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,27,18509,ENSMUSG00000028736,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
22100,cg21360809,-0.0000317,0.0000117,-2.71657659,0.006966499,loss,ns,-0.00000337,0.0000198,-0.169934807,0.865172252,neg,ns,-0.008165439,0.00580542,-1.406519909,0.160571446,neg,ns,0.794331682,-0.00028403,0.000199648,-1.422654137,0.155841915,neg,ns,0.47769693,Agbl4,Agbl4_Intron,4,110916644,110916693,110916692,110916693,50,-,AGAGGCTGGCTCAGGATGCCAGGTTAGGCTAGCAAATTCAAAGGCAGACG,"Intron (Agbl4-204/Agbl4, intron 2 of 2)",4,110397661,110955596,557936,1,Agbl4-204,518983,Agbl4-204;Agbl4-205;Agbl4-206;Agbl4-201;Agbl4-202,Agbl4;Agbl4;Agbl4;Agbl4;Agbl4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,16,78933,ENSMUSG00000061298,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15704,cg13915967,-0.00000205,0.00000123,-1.664084586,0.097105974,loss,ns,0.000000356,0.0000021,0.169913296,0.865189155,pos,ns,0.000524183,0.000614244,0.853379295,0.394107899,pos,ns,0.404384861,0.0000057,0.0000211,0.269785314,0.787504919,pos,ns,0.961575636,Phip,Phip_Exon,9,82916262,82916311,82916310,82916311,50,-,ATCGGAACACACACACATTATCAGGTAAGAAATACCTCCTTTCTGTTCCG,"Exon (Phip-203/Phip, exon 1 of 1)",9,82866159,82975516,109358,2,Phip-201,59205,Phip-201;Phip-207;Phip-202;Phip-204;Phip-214;Phip-203,Phip;Phip;Phip;Phip;Phip;Phip,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,13,83946,ENSMUSG00000032253,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
728,cg24798730,0.00000202,0.00000245,0.825107661,0.409944937,gain,ns,-0.000000706,0.00000416,-0.169783649,0.86529103,neg,ns,0.002655561,0.001218085,2.180112047,0.030001098,pos,ns,1.522862852,-0.0000608,0.0000419,-1.45137329,0.147687145,neg,ns,0.94764804,Nipbl,Nipbl_Exon,15,8323695,8323744,8323743,8323744,50,-,CACTTCATGGCTTTTGTTCGAACAGCAATTGCATTTTCACCAAGAACTCG,"Exon (Nipbl-201/Nipbl, exon 28 of 47)",15,8290617,8444463,153847,2,Nipbl-201,120719,Nipbl-201,Nipbl,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,19,36,71175,ENSMUSG00000022141,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16219,cg26448677,-0.0000154,0.00000447,-3.441313717,0.000658327,loss,ns,0.00000129,0.00000759,0.169723958,0.865337935,pos,ns,-0.002274259,0.002224756,-1.022251133,0.307459122,neg,ns,0.512212617,0.0000337,0.0000765,0.440910974,0.659584775,pos,ns,0.907110447,Lhx1,Lhx1_Intergenic_upstream,11,84610961,84611010,84610961,84610962,50,-,CGCAGTGCCATTGTCTTCAGAAGGAATTAAAAACAAATTGCTGAGGGCCA,Distal Intergenic,11,84518284,84525535,7252,2,Lhx1-201,-85475,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,20,23,16869,ENSMUSG00000018698,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11382,cg08748925,-0.0000224,0.00000419,-5.348589587,0.000000173,loss,yes,-0.00000121,0.00000712,-0.169624179,0.865416343,neg,ns,-0.004435546,0.002086025,-2.126314824,0.034266908,neg,ns,1.465125084,-0.0000369,0.0000717,-0.514897519,0.606991562,neg,ns,0.856310099,Pakap,Pakap_threeUTR,4,57883133,57883182,57883181,57883182,50,-,GATGCAGACCCTCATGGAAGACTATGAGACACACAAATCTAAAAGGCGCG,3' UTR,4,57568179,57896982,328804,1,Pakap-211,314954,Pakap-211;Pakap-213;Pakap-207;Pakap-205;Pakap-206;Pakap-201;Pakap-202;Pakap-204,Pakap;Pakap;Pakap;Pakap;Pakap;Pakap;Pakap;Pakap,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,4,677884,ENSMUSG00000038729,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2691,cg14212421,-0.00000104,0.000000671,-1.54454842,0.123475726,loss,ns,0.000000193,0.00000114,0.169602924,0.865433045,pos,ns,-0.000668486,0.000334069,-2.001044026,0.046259156,neg,ns,1.334802299,0.0000175,0.0000115,1.526274697,0.127961057,pos,ns,0.982712874,Ilf3,Ilf3_Exon,9,21393774,21393823,21393774,21393775,50,-,CGTCCCTCCGACACGCCAAGTGGTTCCAGGTTTGCATTTTGTTCTTCTAT,"Exon (Ilf3-201/Ilf3, exon 6 of 20)",9,21367871,21405360,37490,1,Ilf3-201,25903,Ilf3-201;Ilf3-203;Ilf3-206;Ilf3-213;Ilf3-210;Ilf3-202;Ilf3-204;Ilf3-208;Ilf3-209;Ilf3-216;Ilf3-211,Ilf3;Ilf3;Ilf3;Ilf3;Ilf3;Ilf3;Ilf3;Ilf3;Ilf3;Ilf3;Ilf3,0;0;0;0;25771;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,11,16201,ENSMUSG00000032178,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13097,cg12906435,-0.0000759,0.00000989,-7.673166746,2.20E-13,loss,yes,-0.00000285,0.0000168,-0.169526559,0.865493054,neg,ns,-0.016438982,0.004923752,-3.338710174,0.00094433,neg,ns,3.024876182,0.000167024,0.000169327,0.986397618,0.32470728,pos,ns,0.858080509,Tcf4,Tcf4_Intron,18,69425294,69425343,69425342,69425343,50,+,ACATATTCAGACAGAAAATCATCCTGGCTGAATGACTCATTAAATAGTCG,"Intron (Tcf4-259/Tcf4, intron 3 of 6)",18,69343356,69564082,220727,1,Tcf4-259,81938,Tcf4-259;Tcf4-201;Tcf4-207;Tcf4-210;Tcf4-240;Tcf4-254;Tcf4-246;Tcf4-206;Tcf4-202;Tcf4-257;Tcf4-232;Tcf4-215;Tcf4-248;Tcf4-231;Tcf4-205;Tcf4-253;Tcf4-233;Tcf4-238;Tcf4-245;Tcf4-249;Tcf4-219;Tcf4-235;Tcf4-227;Tcf4-250,Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,42,66,21413,ENSMUSG00000053477,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19534,cg18202122,-0.0000371,0.0000129,-2.877539854,0.004286119,loss,ns,0.00000371,0.0000219,0.169389361,0.865600871,pos,ns,0.024179617,0.006411912,3.771046355,0.000194661,pos,ns,3.710721301,-0.000859393,0.000220505,-3.897381839,0.000119195,neg,ns,0.157798272,Gm9298,Gm9298_Intergenic_downstream,14,99579445,99579494,99579445,99579446,50,-,CGTGAGAAGCTTGTAGATACCCTGAGGTGACTTCATATAATTCTAAAATA,Distal Intergenic,14,99629756,99630666,911,2,Gm9298-201,51221,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,3,668672,NA,mapped to different genes,14,99579408,99579446,39,*,39,6,0.820512821,1.063636364,0.153846154,0.00000642,CpGisland,TRUE,U15,NS
17364,cg25508226,-0.0000302,0.0000124,-2.432056936,0.015579249,loss,ns,-0.00000357,0.0000211,-0.169315663,0.865658786,neg,ns,-0.004838178,0.006176563,-0.783312355,0.434041731,neg,ns,0.362468513,-0.00016549,0.000212411,-0.779098759,0.436515873,neg,ns,0.567665095,Me3,Me3_Exon,7,89849597,89849646,89849597,89849598,50,-,CGAGGGATTTTTGCCAGTGGAAGTCCTTTTAAGAGTGTGACTCTGGAAGA,"Exon (Me3-202/Me3, exon 12 of 14)",7,89632703,89854359,221657,1,Me3-202,216894,Me3-202;Me3-203;Me3-201,Me3;Me3;Me3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,109264,ENSMUSG00000030621,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21812,cg19998594,0.0000338,0.0000161,2.092222897,0.037231698,gain,ns,-0.00000464,0.0000274,-0.169302796,0.865668898,neg,ns,0.00220278,0.008031452,0.274269222,0.784060408,pos,ns,0.105650476,-0.000110938,0.000276201,-0.401655997,0.688213967,neg,ns,0.681274931,Lmo1,Lmo1_Intergenic_upstream,7,109191548,109191597,109191548,109191549,50,+,CGGAAACACAAGGGAACCAATTAGTTTAATTATCAAAACAGCTAATTAAA,Distal Intergenic,7,109138675,109175207,36533,2,Lmo1-202,-16341,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,34,66,109594,ENSMUSG00000036111,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15254,cg25210850,0.0000112,0.0000118,0.950825552,0.342433648,gain,ns,0.00000339,0.00002,0.169211646,0.86574053,pos,ns,0.001727602,0.005870335,0.294293638,0.768730494,pos,ns,0.114225891,0.000153968,0.00020188,0.762671959,0.446238993,pos,ns,0.232143531,Lrrtm4,Lrrtm4_fiveUTR,6,80018906,80018955,80018906,80018907,50,-,CGGAGGGCACTCAGTGTATCACAAACTCAAGCATTAGCACCAACAAGCTC,Promoter (<=1kb),6,80018918,80024924,6007,1,Lrrtm4-202,0,Lrrtm4-208;Lrrtm4-204;Lrrtm4-202;Lrrtm4-205;Lrrtm4-203;Lrrtm4-206;Lrrtm4-207;Lrrtm4-201,Lrrtm4;Lrrtm4;Lrrtm4;Lrrtm4;Lrrtm4;Lrrtm4;Lrrtm4;Lrrtm4,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,4,243499,ENSMUSG00000052581,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25812,cg09397298,0.0000201,0.00000315,6.399906571,5.74E-10,gain,yes,0.000000904,0.00000535,0.16911486,0.865816592,pos,ns,0.0007563,0.001566234,0.482878174,0.629523066,pos,ns,0.200988352,0.0000143,0.0000539,0.266365353,0.790134927,pos,ns,0.077064402,Uncx,Uncx_Intergenic_downstream,5,139550590,139550639,139550638,139550639,50,+,CATCATACATTCATTTTCCCATTTGATAAATCTGCTATCTAGACGGCTCG,Distal Intergenic,5,139543898,139545268,1371,1,Uncx-202,6692,Uncx-201,Uncx,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,59,88,22255,ENSMUSG00000029546,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
12493,cg22356487,0.0000422,0.00000655,6.440007623,4.55E-10,gain,yes,-0.00000188,0.0000111,-0.169096645,0.865830907,neg,ns,0.010482707,0.003258554,3.216981135,0.001432396,pos,ns,2.843936921,-0.000431214,0.000112061,-3.848013926,0.000144602,neg,ns,0.591369996,Grid2,Grid2_Exon,6,64665944,64665993,64665992,64665993,50,+,ACCTCGTCAATTGATTTGACCCCTCTGGACATTGACACTTTGCCAACACG,"Exon (Grid2-201/Grid2, exon 16 of 16)",6,63256027,64668285,1412259,1,Grid2-201,1409917,Grid2-201;Grid2-207,Grid2;Grid2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,10,14804,ENSMUSG00000071424,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20273,cg00407148,0.00000867,0.00000117,7.386318926,1.41E-12,gain,yes,0.000000337,0.00000199,0.168754731,0.866099621,pos,ns,0.000196383,0.000584339,0.33607773,0.737039612,pos,ns,0.132509171,0.0000303,0.0000201,1.507977802,0.132578626,pos,ns,0.015479963,Hoxc5,Hoxc5_Exon,15,102981706,102981755,102981706,102981707,50,+,CGACAATGAAGACCTCCTAGCGTCCAGGTTTCCGGCCACCGGGGCTCATC,"Exon (Hoxc9-201/Hoxc9, exon 2 of 3)",15,102967443,103015676,48234,1,Hoxc5-202,14263,Hoxc5-202;Hoxc9-202;Hoxc9-201,Hoxc5;Hoxc9;Hoxc9,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,72,134,15424,ENSMUSG00000022485,conserved gene and region,15,102981651,102982178,528,*,528,70,0.696969697,1.109010712,0.132575758,6.92E-63,CpGisland,TRUE,U3,Pr-B
17502,cg09830675,0.00000268,0.00000776,0.345469932,0.729975418,gain,ns,0.00000222,0.0000132,0.168645365,0.866185577,pos,ns,0.004457481,0.003861506,1.154337345,0.249250988,pos,ns,0.603363112,-0.000310669,0.000132797,-2.339426652,0.01994803,neg,ns,0.847225443,Gm12636,Gm12636_Intergenic_upstream,4,90566089,90566138,90566137,90566138,50,+,CTCTGTCAGATAATTGGTAACATTGCACACCAATAAGGCATTTCCCTACG,Distal Intergenic,4,90543747,90544370,624,2,Gm12636-201,-21719,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,100417387,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24430,cg21192182,0.00000615,0.00000599,1.026970396,0.305235055,gain,ns,0.00000172,0.0000102,0.168575826,0.866240231,pos,ns,-0.001108239,0.002981605,-0.371692051,0.71037607,neg,ns,0.148511677,0.0000158,0.000102537,0.154165803,0.877579321,pos,ns,0.690330888,Csf3r,Csf3r_Intergenic_upstream,4,125882280,125882329,125882280,125882281,50,+,CGGTGAAATTGCTTCCACCTGAGGTTGTCACGGGCTAGGAAGAAATACCA,Distal Intergenic,4,126024550,126044440,19891,1,Csf3r-202,-142221,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,7,12986,ENSMUSG00000028859,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16671,cg00179765,-0.00000495,0.00000439,-1.129211695,0.259681585,loss,ns,-0.00000126,0.00000745,-0.168463439,0.866328563,neg,ns,-0.002033128,0.002182536,-0.931543903,0.352297185,neg,ns,0.453090827,0.000142267,0.0000751,1.895440899,0.058964051,pos,ns,0.855285686,Tbx4,Tbx4_Intergenic_downstream,11,85917538,85917587,85917586,85917587,50,+,TCGCAGTGTCTTATCTTACAACATAAAATTAAAACCCACTTAAAAGGCCG,Distal Intergenic,11,85896765,85916095,19331,1,Tbx4-202,20773,Tbx4-203;Tbx4-201;Tbx4-202,Tbx4;Tbx4;Tbx4,0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,9,21387,ENSMUSG00000000094,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
2371,cg18954869,0.00000928,0.0000017,5.470189065,9.27E-08,gain,yes,-0.000000485,0.00000288,-0.168434028,0.866351679,neg,ns,0.001983022,0.000844409,2.348412945,0.019481572,pos,ns,1.710375998,-0.0000145,0.000029,-0.499211582,0.61798442,neg,ns,0.041344403,Tfap2b,Tfap2b_Intron,1,19211930,19211979,19211978,19211979,50,-,TTCTCCACTGAATGAACGTCATTTACAATAGTAGGGGAGCTCTGCGCTCG,"Intron (Tfap2b-201/Tfap2b, intron 1 of 6)",1,19208914,19238576,29663,1,Tfap2b-201,3016,Tfap2b-201;Tfap2b-204;Tfap2b-202;Tfap2b-205;Tfap2b-203,Tfap2b;Tfap2b;Tfap2b;Tfap2b;Tfap2b,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,40,21419,ENSMUSG00000025927,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
5222,cg13550191,0.0000396,0.00000625,6.330395584,8.56E-10,gain,yes,-0.00000179,0.0000106,-0.168382119,0.866392479,neg,ns,-0.000594685,0.003109771,-0.191231201,0.848469645,neg,ns,0.07136369,0.000101782,0.000106945,0.951724343,0.34197824,pos,ns,0.756780703,Ets1,Ets1_Intergenic_downstream,9,32936627,32936676,32936675,32936676,50,-,GAAACGGGATTTGTAATGTAACACTAACAATAACACACTAGAGACAGCCG,Distal Intergenic,9,32696384,32754428,58045,1,Ets1-205,240292,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,8,23871,ENSMUSG00000032035,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6329,cg01143372,-0.00000108,0.0000055,-0.19643612,0.844397541,loss,ns,-0.00000157,0.00000935,-0.168378179,0.866395576,neg,ns,0.001601403,0.002738656,0.584740612,0.559147472,pos,ns,0.252473635,-0.000207036,0.0000942,-2.198251689,0.028670062,neg,ns,0.920842466,Pknox2,Pknox2_threeUTR,9,36894430,36894479,36894478,36894479,50,-,TTGGGGGCAGGATCTGGGTTGCTGGCATCAAGCATGGGCTGCAGGATGCG,3' UTR,9,36890982,37083309,192328,2,Pknox2-207,188830,Pknox2-207;Pknox2-201;Pknox2-202;Pknox2-203;Pknox2-206,Pknox2;Pknox2;Pknox2;Pknox2;Pknox2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,47,208076,ENSMUSG00000035934,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23735,cg21688891,-0.0000055,0.00000433,-1.270437084,0.204881619,loss,ns,-0.00000124,0.00000736,-0.168211514,0.866526574,neg,ns,-0.003919861,0.002155902,-1.818200234,0.069998531,neg,ns,1.154911072,0.0000174,0.0000741,0.234201296,0.814983307,pos,ns,0.915676129,Llph,Llph_Intergenic_downstream,10,120245799,120245848,120245799,120245800,50,-,CGACACGAAGTTCAGATGTATTGGCAGATCCCCATGCTTGCATTTATTAT,Distal Intergenic,10,120227186,120232071,4886,1,Llph-202,18662,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,66225,ENSMUSG00000020224,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19600,cg06107587,-0.00000194,0.00000145,-1.337524051,0.182032106,loss,ns,-0.000000415,0.00000247,-0.167952832,0.866729904,neg,ns,0.000832261,0.00072315,1.150884208,0.25066681,pos,ns,0.600903165,-0.000013,0.0000249,-0.522188168,0.601912257,neg,ns,0.953759633,Hnrnpdl,Hnrnpdl_threeUTR,5,100035604,100035653,100035604,100035605,50,-,CGCTGGTACATGAAGTTGGAAGAGACCATACCACAGGACAGCGTTTTCTG,Promoter (<=1kb),5,100033577,100036068,2492,2,Hnrnpdl-203,415,Enoph1-202;Enoph1-201;Enoph1-203;Hnrnpdl-203;Hnrnpdl-202;Hnrnpdl-207;Hnrnpdl-201;Hnrnpdl-204;Hnrnpdl-205;Hnrnpdl-206,Enoph1;Enoph1;Enoph1;Hnrnpdl;Hnrnpdl;Hnrnpdl;Hnrnpdl;Hnrnpdl;Hnrnpdl;Hnrnpdl,0;0;0;0;0;0;0;0;0;1470,TRUE,FALSE,TRUE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,8,8,50926,ENSMUSG00000029328,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
14799,cg18375032,0.0000345,0.0000082,4.215381223,0.0000328,gain,ns,0.00000234,0.0000139,0.16794042,0.86673966,pos,ns,0.00540083,0.004079184,1.323997762,0.186479207,pos,ns,0.729369587,-0.000194022,0.000140283,-1.383079628,0.167635776,neg,ns,0.557936514,Gm11146,Gm11146_Intergenic_upstream,16,77789790,77789839,77789838,77789839,50,-,GCTGAACATTGAAATGAGACGAGCCTTTATCACCTTTGTGTCTGGTCACG,Distal Intergenic,16,77588578,77602094,13517,2,Gm11146-201,-187745,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,21,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2460,cg23560020,0.0000133,0.0000142,0.93398264,0.35103976,gain,ns,0.00000405,0.0000241,0.167857757,0.866804637,pos,ns,0.044121402,0.007066492,6.243749086,1.40E-09,pos,ns,8.85244657,-0.001411839,0.000243016,-5.809651691,1.55E-08,neg,yes,0.665025789,Gm12353,Gm12353_Exon,4,19621923,19621972,19621971,19621972,50,-,AATACCTGCCAAAACCAAATGATTTGCTTGCTGTTTCTTGTATAATGTCG,"Exon (Wwp1-202/Wwp1, exon 22 of 25)",4,19605451,19651130,45680,1,Gm12353-201,16472,Gm12353-201;Wwp1-202;Wwp1-201,Gm12353;Wwp1;Wwp1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27199,cg06345626,-0.00000597,0.00000222,-2.69027031,0.007526339,loss,ns,0.000000633,0.00000377,0.167853624,0.866807886,pos,ns,-0.001636066,0.001104888,-1.480753208,0.139687973,neg,ns,0.854840984,-0.0000161,0.000038,-0.42388754,0.671941808,neg,ns,0.954188451,Mafb,Mafb_Intergenic_upstream,2,160485612,160485661,160485612,160485613,50,-,CGCTGCCTATTAAAGGCAGTCAAGCTGAAGGGAATCGGTGCACATTACAG,Distal Intergenic,2,160363703,160367065,3363,2,Mafb-201,-118596,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,22,16658,ENSMUSG00000074622,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
496,cg23867108,0.00000192,0.00000325,0.588573279,0.55657615,gain,ns,-0.000000927,0.00000553,-0.167711413,0.866919672,neg,ns,-0.000983645,0.001619451,-0.607393737,0.544034292,neg,ns,0.264373725,0.000031,0.0000557,0.555747629,0.57878425,pos,ns,0.954838574,Ccm2,Ccm2_Exon,11,6569977,6570026,6569977,6569978,50,-,CGCCATTTAAACGAGTATTCCTAAAAGGTGAAAAGAGTAGAGATAAGAAA,"Exon (Ccm2-201/Ccm2, exon 2 of 10)",11,6546887,6596744,49858,1,Ccm2-201,23090,Ccm2-201;Ccm2-205;Ccm2-203;Ccm2-207;Ccm2-206;Ccm2-202,Ccm2;Ccm2;Ccm2;Ccm2;Ccm2;Ccm2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,216527,ENSMUSG00000000378,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22690,cg09084199,0.000000772,0.00000135,0.57366239,0.566612227,gain,ns,0.000000383,0.00000229,0.167578889,0.867023847,pos,ns,-0.000183881,0.00066985,-0.274509949,0.783875602,neg,ns,0.105752853,-0.00000276,0.000023,-0.119624806,0.904857855,neg,ns,0.027655621,Maf,Maf_Exon,8,115706785,115706834,115706833,115706834,50,+,GATCGAAGTCATTAACATATTCCATGGCCAGGGGACTGGTGGGCAGGTCG,Promoter (<=1kb),8,115682942,115707096,24155,2,Maf-201,262,Maf-201;Maf-202,Maf;Maf,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,23,17132,ENSMUSG00000055435,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
27252,cg22328993,-0.0000309,0.0000106,-2.930543211,0.003635103,loss,ns,-0.000003,0.0000179,-0.167466894,0.867111887,neg,ns,-0.006746498,0.005256052,-1.283567706,0.200251882,neg,ns,0.698423395,0.00000799,0.000180755,0.044189053,0.964782158,pos,ns,0.446517032,Nhs,Nhs_Promoter,X,162167192,162167241,162167192,162167193,50,-,CGTGTTTCCTTTGGGTTCAGAGACACCGCAATTACAGGGCTTAAGGGTAG,Promoter (7-8kb),20,161833296,162159730,326435,2,Nhs-202,-7511,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,12,195727,ENSMUSG00000059493,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10288,cg26422022,0.00000348,0.00000164,2.126817699,0.034224738,gain,ns,-0.000000466,0.00000278,-0.16744843,0.867126401,neg,ns,0.003004454,0.000815434,3.684483344,0.000270373,pos,ns,3.568036663,-0.0000379,0.000028,-1.351290786,0.177587614,neg,ns,0.042198909,Lox,Lox_fiveUTR,18,52529786,52529835,52529786,52529787,50,-,CGTTGCACAGGGAGCGTTAAGGGGAAAGAACAAAACGGAACACACATCCT,Promoter (<=1kb),18,52516069,52529867,13799,2,Lox-202,32,Lox-201;Lox-202,Lox;Lox,-112;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,1,16948,ENSMUSG00000024529,conserved gene but different region,18,52529662,52529896,235,*,235,13,0.574468085,0.713118581,0.055319149,0.000000429,CpGisland,TRUE,NA,NRS
10548,cg22928316,0.0000161,0.00000574,2.7988209,0.005450294,gain,ns,-0.00000163,0.00000975,-0.16741713,0.867151006,neg,ns,-0.001060364,0.002856638,-0.371193003,0.710747334,neg,ns,0.148284761,0.0000589,0.0000982,0.599650629,0.549177124,pos,ns,0.840370238,Trpc4,Trpc4_Exon,3,54266341,54266390,54266389,54266390,50,-,GCACATCGACAGGTCAGACTTGAACAGGCAAGGTCCACCACCAACCATCG,"Exon (Trpc4-201/Trpc4, exon 4 of 11)",3,54156057,54318471,162415,1,Trpc4-201,110284,Trpc4-201;Trpc4-204;Trpc4-205;Trpc4-206,Trpc4;Trpc4;Trpc4;Trpc4,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,22066,ENSMUSG00000027748,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18846,cg18058895,-0.0000413,0.00000572,-7.212081282,4.25E-12,loss,yes,-0.00000163,0.00000972,-0.167398862,0.867165367,neg,ns,-0.010256502,0.002848988,-3.600050637,0.000370305,neg,ns,3.431440257,0.000258474,0.000098,2.638127322,0.008757284,pos,ns,0.900435784,Mllt6,Mllt6_Exon,11,97670256,97670305,97670256,97670257,50,-,CGAAAGGACAAAGAACGCCTTAAGCAGAAGCACAAGAAGCGGCCTGAGTC,"Exon (Mllt6-201/Mllt6, exon 8 of 20)",11,97663414,97685463,22050,1,Mllt6-201,6842,Mllt6-201;Mllt6-206;Mllt6-202;Mllt6-203,Mllt6;Mllt6;Mllt6;Mllt6,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,4,246198,ENSMUSG00000038437,conserved gene and region,11,97670242,97670333,92,*,92,8,0.641304348,0.904176904,0.086956522,0.00000628,CpGisland,TRUE,NA,NRS
4341,cg24516128,0.00000831,0.00000201,4.129884279,0.0000467,gain,ns,-0.000000572,0.00000342,-0.167396293,0.867167386,neg,ns,0.004113005,0.001001555,4.106620615,0.0000514,pos,ns,4.288919783,-0.0000771,0.0000344,-2.237999415,0.02593101,neg,ns,0.040032986,Arf5,Arf5_Exon,6,28424302,28424351,28424302,28424303,50,+,CGGCTGGCAAGACCACAATCCTGTACAAACTGAAGTTGGGGGAGATTGTC,Promoter (<=1kb),6,28423560,28426602,3043,1,Arf5-201,742,Arf5-201;Arf5-202;Arf5-203;Fscn3-201;Gcc1-202;Gcc1-201;Gcc1-203;Gcc1-204,Arf5;Arf5;Arf5;Fscn3;Gcc1;Gcc1;Gcc1;Gcc1,0;0;0;0;0;0;-3444;-149,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,11844,ENSMUSG00000020440,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
25772,cg07116727,0.0000845,0.00000708,11.94472127,2.62E-27,gain,yes,-0.00000201,0.000012,-0.167180615,0.867336937,neg,ns,0.002923665,0.003522711,0.8299473,0.407207244,pos,ns,0.390184505,0.000247134,0.000121146,2.039968889,0.042200766,pos,ns,0.156848317,Uncx,Uncx_Promoter,5,139539347,139539396,139539347,139539348,50,-,CGATTTCCTGATTACAATTAGACTCCTGATTTGGGCTCCTTCAAGCATTG,Promoter (4-5kb),5,139543494,139548179,4686,1,Uncx-201,-4147,Uncx-201;Uncx-202,Uncx;Uncx,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,22,88,22255,ENSMUSG00000029546,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
9295,cg14390750,-0.0000205,0.00000824,-2.485093323,0.013478924,loss,ns,-0.00000234,0.000014,-0.167051868,0.867438152,neg,ns,0.00398115,0.004101846,0.970575326,0.332516458,pos,ns,0.478186854,-0.000230712,0.000141062,-1.63553273,0.102952321,neg,ns,0.661525704,Slit2,Slit2_Exon,5,48000310,48000359,48000310,48000311,50,+,CGTTTAAACAGAAATCACCTTCAGCTGTTTCCTGAGTTGCTGTTTCTTGG,"Exon (Slit2-208/Slit2, exon 4 of 36)",5,47983138,48307733,324596,1,Slit2-208,17172,Slit2-208;Slit2-207;Slit2-201;Slit2-202;Slit2-216;Slit2-217;Slit2-221;Slit2-214;Slit2-219,Slit2;Slit2;Slit2;Slit2;Slit2;Slit2;Slit2;Slit2;Slit2,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,11,20563,ENSMUSG00000031558,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14005,cg08787394,0.00000913,0.00001,0.910758861,0.363130067,gain,ns,0.00000284,0.000017,0.166988521,0.867487952,pos,ns,-0.004557313,0.004988728,-0.913522105,0.361677947,neg,ns,0.441677971,0.000233452,0.000171562,1.36074252,0.174583532,pos,ns,0.700803926,Gm13668,Gm13668_Intergenic_upstream,2,74169029,74169078,74169077,74169078,50,-,ACCGGCCTGTCATTGTGACATGGCATAAAATGCCTACATCTTTCAACTCG,Distal Intergenic,2,73959669,73960669,1001,2,Gm13668-201,-208409,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,18,20,667729,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14852,cg11208313,-0.00000391,0.00000141,-2.772264421,0.005903522,loss,ns,0.0000004,0.0000024,0.166926722,0.867536537,pos,ns,-0.000595275,0.000702216,-0.847709193,0.397253963,neg,ns,0.400931762,0.00000744,0.0000241,0.308116493,0.758200619,pos,ns,0.033293888,Phf12,Phf12_Intron,11,77984745,77984794,77984793,77984794,50,-,TATATTTTTATTCTCAGCGCCATTTTGGCTGCATATATGATTTGCAAACG,"Intron (Phf12-202/Phf12, intron 2 of 10)",11,77982754,78026214,43461,1,Phf12-202,1991,Phf12-202;Phf12-201,Phf12;Phf12,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,27,268448,ENSMUSG00000037791,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
27232,cg21545849,-0.0000563,0.0000167,-3.361389966,0.000872606,loss,ns,0.00000475,0.0000284,0.166911973,0.867548133,pos,ns,-0.012218848,0.008334715,-1.466018623,0.143656802,neg,ns,0.842673807,-0.00037731,0.00028663,-1.316365781,0.189023744,neg,ns,0.118731731,Chd6,Chd6_Promoter,2,161109171,161109220,161109219,161109220,50,-,TTTCAAGCTTGCTTGCAGGGGCGAGTGATGGGCTCGCTCCATTGTGCTCG,Promoter (<=1kb),2,161008034,161109075,101042,2,Chd6-207,-145,Chd6-201;Chd6-204;Chd6-207;Chd6-202,Chd6;Chd6;Chd6;Chd6,0;0;0;-167,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,8,71389,ENSMUSG00000057133,conserved gene and region,2,161109086,161109789,704,*,704,56,0.65625,0.744973545,0.079545455,6.42E-37,CpGisland,TRUE,U2,Pr-W
3206,cg18253710,0.000044,0.00000993,4.427784521,0.0000132,gain,ns,0.00000281,0.0000169,0.166832106,0.867610923,pos,ns,0.001868541,0.004940908,0.378177703,0.705557418,pos,ns,0.151467638,0.0000459,0.000169917,0.270283648,0.787121895,pos,ns,0.073203162,Fezf1,Fezf1_fiveUTR,6,23248345,23248394,23248345,23248346,50,-,CGCCAATCGTTAACTTCCAAGAGGAGAAGGTAAACTAGATAATTGCTCAA,Promoter (<=1kb),6,23245044,23248362,3319,2,Fezf1-201,0,Fezf1-201,Fezf1,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,7,73191,ENSMUSG00000029697,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7345,cg07555170,-0.0000152,0.00000941,-1.618812525,0.106504506,loss,ns,-0.00000267,0.000016,-0.16679811,0.86763765,neg,ns,-0.000125129,0.004684499,-0.026711247,0.978707229,neg,ns,0.009347204,-0.000358869,0.0001611,-2.2276255,0.026623019,neg,ns,0.745495749,Ptchd4,Ptchd4_Exon,17,42377195,42377244,42377195,42377196,50,+,CGGGGTAGTGGAAGTGCCAAACAGCAAAGATCAGCGGGTCAAGTCAGCCA,"Exon (Ptchd4-201/Ptchd4, exon 3 of 4)",17,42315947,42505077,189131,1,Ptchd4-201,61248,Ptchd4-201;Ptchd4-202,Ptchd4;Ptchd4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,9,627626,ENSMUSG00000042256,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21479,cg09450240,0.000073,0.00000455,16.04982175,1.29E-42,gain,yes,-0.00000129,0.00000773,-0.166641804,0.867760538,neg,ns,0.00310543,0.002263528,1.371942732,0.17107327,pos,ns,0.766817843,0.000189657,0.0000778,2.436416072,0.015396306,pos,ns,0.109105725,Camkv,Camkv_Promoter,9,107936455,107936504,107936503,107936504,50,+,CAGTCACTAATTTCCATGACAACGGAGAGTTCTTTATGGGCGACAACCCG,Promoter (<=1kb),9,107935674,107949691,14018,1,Camkv-201,781,Actl11-201;Camkv-201;Camkv-202;Camkv-203;Camkv-205,Actl11;Camkv;Camkv;Camkv;Camkv,0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,1,3,235604,ENSMUSG00000032936,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
27780,cg17193033,-0.0000189,0.00000517,-3.652234218,0.000305097,loss,ns,-0.00000146,0.00000879,-0.166566194,0.867819984,neg,ns,0.000993385,0.002573748,0.385968416,0.699784808,pos,ns,0.15503549,-0.0000746,0.0000885,-0.842338629,0.400247819,neg,ns,0.955220769,Gm3809,Gm3809_Intergenic_upstream,1,186909226,186909275,186909274,186909275,50,-,CCTCTTTCAATGTGGGCCTCAAACCATTATTTATTGGCTGAAATTAATCG,Distal Intergenic,1,186960508,186961513,1006,1,Gm3809-201,-51282,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,8,100042375,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2921,cg27601924,-0.0000006,0.0000016,-0.376163502,0.707052652,loss,ns,0.000000451,0.00000271,0.166508341,0.86786547,pos,ns,-0.000309337,0.000793924,-0.389629809,0.697077846,neg,ns,0.156718719,-0.0000148,0.0000273,-0.5433083,0.587308006,neg,ns,0.961856809,Ehbp1,Ehbp1_Intron,11,22056046,22056095,22056094,22056095,50,-,TTACCATATATATTATATTAATGCAAACATCATTCAGCTAGTAATTCACG,"Intron (Ehbp1-201/Ehbp1, intron 19 of 23)",11,22005828,22285838,280011,2,Ehbp1-201,229743,Ehbp1-201;Ehbp1-202;Ehbp1-207,Ehbp1;Ehbp1;Ehbp1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,34,45,216565,ENSMUSG00000042302,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12129,cg09164432,0.000000672,0.00000359,0.187400878,0.851468929,gain,ns,-0.00000101,0.00000609,-0.166497129,0.867874286,neg,ns,0.0004884,0.001785479,0.273540141,0.784620196,pos,ns,0.105340517,-0.0000656,0.0000614,-1.068421362,0.286161752,neg,ns,0.937871407,Ino80d,Ino80d_Exon,1,63058732,63058781,63058780,63058781,50,+,TCTCCCCAAGTGCACTCTGGCTGATCAGAGTGGCAGAAGTAAGGCCAACG,"Exon (Ino80d-202/Ino80d, exon 9 of 13)",1,62958418,63091929,133512,2,Ino80d-202,33148,Ino80d-202;Ino80d-205;Ino80d-206;Ino80d-201;Ino80d-207;Ino80d-203;Ino80d-204,Ino80d;Ino80d;Ino80d;Ino80d;Ino80d;Ino80d;Ino80d,0;0;0;0;4780;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,12,227195,ENSMUSG00000040865,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3825,cg19090034,0.000099,0.0000157,6.315878577,9.31E-10,gain,yes,0.00000443,0.0000266,0.166447162,0.867913571,pos,ns,0.010121963,0.007803048,1.297180625,0.195533606,pos,ns,0.70877859,-0.0000413,0.000268346,-0.153964062,0.877738254,neg,ns,0.700623216,5730522E02Rik,5730522E02Rik_Intergenic_downstream,11,25536236,25536285,25536284,25536285,50,-,GCCCATTTGCTTGTCCTAATGTGTACACAGTGATAATGTAGCCATTTACG,Distal Intergenic,11,25602816,25620098,17283,2,5730522E02Rik-205,83862,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,21,90,70626,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18658,cg25373484,0.0000482,0.0000155,3.109636478,0.002047139,gain,ns,0.00000438,0.0000263,0.166400411,0.867950328,pos,ns,0.013782437,0.007707464,1.788193504,0.074721313,pos,ns,1.126555503,-0.000129556,0.000265059,-0.488782762,0.625341108,neg,ns,0.350768165,Skap1,Skap1_Intron,11,96596218,96596267,96596266,96596267,50,+,TATAGGACTTTACTCCATTAGATTAATGAAATTTCAATGAGAGCCTGGCG,"Intron (Skap1-204/Skap1, intron 4 of 12)",11,96464593,96758941,294349,1,Skap1-204,131625,Skap1-204;Skap1-203;Skap1-209;Skap1-201;Skap1-206;Skap1-208,Skap1;Skap1;Skap1;Skap1;Skap1;Skap1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,40,46,78473,ENSMUSG00000057058,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
3177,cg13862983,0.00000348,0.00000249,1.396826819,0.163464799,gain,ns,0.000000705,0.00000424,0.166375694,0.867969763,pos,ns,0.00281081,0.001240895,2.265146512,0.024193598,pos,ns,1.616299536,-0.0000777,0.0000427,-1.819978345,0.069726579,neg,ns,0.06225344,Klf9,Klf9_Exon,19,23141903,23141952,23141903,23141904,50,+,CGGGGGACACCTGGAAGGATTACTGCACACTGGTCACCATCGCCAAGAGC,Promoter (<=1kb),19,23141226,23168134,26909,1,Klf9-201,677,Klf9-201;Klf9-202,Klf9;Klf9,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,13,16601,ENSMUSG00000033863,conserved gene and region,19,23141183,23142172,990,*,990,120,0.684848485,1.033789605,0.121212121,5.63E-102,CpGisland,TRUE,U1,Pr-A
7394,cg20823348,-0.00000203,0.00000323,-0.628991028,0.529818139,loss,ns,0.000000913,0.00000549,0.166276181,0.868048005,pos,ns,-0.001132214,0.001607949,-0.704135356,0.481877075,neg,ns,0.317063735,0.000101552,0.0000553,1.836471461,0.067245356,pos,ns,0.934265183,Pou3f3,Pou3f3_Intergenic_upstream,1,42540248,42540297,42540248,42540249,50,+,CGTCATGCTGAGTTTTTATAGCTCCTGGCTTTCAAAAAGCCTGTTTCAAA,Distal Intergenic,1,42694925,42703176,8252,1,Pou3f3-202,-154628,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,37,18993,ENSMUSG00000045515,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6235,cg14272076,0.00000545,0.00000431,1.265357495,0.206693457,gain,ns,0.00000122,0.00000732,0.166208025,0.868101594,pos,ns,0.001384327,0.002144009,0.645672399,0.518969167,pos,ns,0.284858444,-0.0000636,0.0000737,-0.862602165,0.389023057,neg,ns,0.783117314,Casr,Casr_Exon,16,36495258,36495307,36495258,36495259,50,-,CGATGAAGAAGATGAGCATGCTGAAGGTGATGAACTTGGCTTCATTGAAG,"Exon (Casr-201/Casr, exon 7 of 7)",16,36493696,36562134,68439,2,Casr-201,66827,Casr-201;Casr-202;Casr-203,Casr;Casr;Casr,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,12374,ENSMUSG00000051980,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2783,cg26294925,0.000000754,0.00000679,0.111111774,0.911599616,gain,ns,0.00000192,0.0000115,0.166200026,0.868107883,pos,ns,-0.003889113,0.003377255,-1.151560411,0.250389117,neg,ns,0.601384552,0.0000069,0.000116144,0.059392209,0.952677987,pos,ns,0.841764007,Wdpcp,Wdpcp_Intron,11,21694307,21694356,21694355,21694356,50,-,GTCTGGTCCAGTAGGCTTAGCCATGCGCTTAATCCCCAGAAAGTGGTTCG,"Intron (Wdpcp-201/Wdpcp, intron 8 of 17)",11,21572235,21898989,326755,1,Wdpcp-201,122072,Wdpcp-201;Wdpcp-205;Wdpcp-204;Wdpcp-206,Wdpcp;Wdpcp;Wdpcp;Wdpcp,0;0;0;-773,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,7,216560,ENSMUSG00000020319,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18657,cg13173809,0.0000248,0.0000169,1.465827137,0.143708945,gain,ns,-0.00000478,0.0000288,-0.166055566,0.868221469,neg,ns,0.015813409,0.008435618,1.874600046,0.06178795,pos,ns,1.209096213,-0.000469274,0.0002901,-1.617628912,0.106759618,neg,ns,0.339442745,Skap1,Skap1_Intron,11,96596144,96596193,96596192,96596193,50,+,TCCGAGTCTGAGAGTTCAAACAGAGGTTATCTTTCCCAGGTAGCATCTCG,"Intron (Skap1-204/Skap1, intron 4 of 12)",11,96464593,96758941,294349,1,Skap1-204,131551,Skap1-204;Skap1-203;Skap1-209;Skap1-201;Skap1-206;Skap1-208,Skap1;Skap1;Skap1;Skap1;Skap1;Skap1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,40,46,78473,ENSMUSG00000057058,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
10799,cg03225070,-0.0000618,0.00000848,-7.291041581,2.58E-12,loss,yes,-0.00000239,0.0000144,-0.166027261,0.868243725,neg,ns,-0.007971613,0.004218536,-1.88966318,0.059735921,neg,ns,1.223764433,0.000123811,0.000145075,0.853427844,0.394081027,pos,ns,0.87781159,Dbn1,Dbn1_threeUTR,13,55473733,55473782,55473733,55473734,50,-,CGAGCCATTTATTGCCATGTTTTAAAATTCGTGCAAAATATCTGAAGCCC,3' UTR,13,55473429,55488111,14683,2,Dbn1-201,14329,Dbn1-201;Dbn1-203;Dbn1-202;Dbn1-206;Prr7-201,Dbn1;Dbn1;Dbn1;Dbn1;Prr7,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,4,56320,ENSMUSG00000034675,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
4547,cg04313551,-0.0000102,0.00000532,-1.922306788,0.055483398,loss,ns,-0.0000015,0.00000903,-0.165995918,0.86826837,neg,ns,-0.003967079,0.002646759,-1.498844196,0.134931676,neg,ns,0.869886084,-0.0000579,0.000091,-0.635608565,0.525500506,neg,ns,0.915952985,Cacna2d3,Cacna2d3_Intron,14,29599632,29599681,29599632,29599633,50,+,CGCTTGTCATCCTGGCCTCAATAGTAAGTTGATTTGAATCAGATATTTGC,"Intron (Cacna2d3-201/Cacna2d3, intron 2 of 37)",14,28904943,29721864,816922,2,Cacna2d3-201,122183,Cacna2d3-201,Cacna2d3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,4,12294,ENSMUSG00000021991,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4662,cg22305268,0.00000259,0.0000141,0.183602751,0.854445136,gain,ns,-0.00000398,0.000024,-0.165957111,0.868298884,neg,ns,0.012496104,0.007024174,1.779013872,0.076217287,pos,ns,1.117946515,-0.000129223,0.000241561,-0.534951413,0.593066956,neg,ns,0.273118585,Hes1,Hes1_Intergenic_downstream,16,30068811,30068860,30068811,30068812,50,-,CGGGAGAGATCAATCTTTGAAGCTTTCCTAACAAAGATAAAGCCAACGAT,Downstream (1-2kb),16,30066338,30067319,982,1,Hes1-204,2522,Hes1-202;Hes1-201;Hes1-203;Hes1-204,Hes1;Hes1;Hes1;Hes1,0;0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,6,20,15205,ENSMUSG00000022528,conserved gene and region,16,30068642,30068812,171,*,171,15,0.719298246,0.730769231,0.087719298,6.69E-11,CpGisland,TRUE,NA,NRS
7789,cg24824840,0.00000725,0.0000113,0.640213779,0.522506528,gain,ns,-0.00000319,0.0000192,-0.165906642,0.868338568,neg,ns,0.001437307,0.005637926,0.254935429,0.798942015,pos,ns,0.09748474,-0.0000174,0.000193888,-0.089593425,0.928668166,neg,ns,0.764900663,Shank1,Shank1_Exon,7,44312907,44312956,44312907,44312908,50,+,CGCCCACTTCAGCATGATGGTCTTCAGGATTGGCATCCCGGACCTGCACC,"Exon (Shank1-203/Shank1, exon 2 of 25)",7,44310253,44360572,50320,1,Shank1-203,2654,Shank1-203;Shank1-202;Shank1-201,Shank1;Shank1;Shank1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,243961,ENSMUSG00000038738,conserved gene and region,7,44312687,44312908,222,*,222,19,0.693693694,0.711898734,0.085585586,1.69E-13,CpGisland,TRUE,NA,NRS
9034,cg04534032,-0.0000135,0.00000398,-3.394255431,0.000777634,loss,ns,0.00000112,0.00000675,0.165879022,0.868360286,pos,ns,-0.003885305,0.001978712,-1.963552854,0.050475521,neg,ns,1.296919188,0.0000944,0.000068,1.387859688,0.166176463,pos,ns,0.911736332,Gm18761,Gm18761_Intron,14,46670427,46670476,46670427,46670428,50,+,CGAAAGGAAATTAATTTTGTTTTTCAAGGTCTTGGCAATAAGTCGGTTCT,"Intron (D330046F09Rik-201/D330046F09Rik-201, intron 1 of 3)",14,46607552,46608952,1401,1,Gm18761-201,62875,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,6,100417681,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23774,cg27572735,-0.0000258,0.000015,-1.712079288,0.087882122,loss,ns,0.00000424,0.0000256,0.165878682,0.868360553,pos,ns,-0.013491062,0.007489734,-1.801273851,0.072631373,neg,ns,1.138875745,0.000416578,0.000257571,1.617332399,0.106823604,pos,ns,0.606586749,Foxo6,Foxo6_Intergenic_upstream,4,120332869,120332918,120332917,120332918,50,+,TTTTAATCAGAAACAGAGCAGCTGTTAGTCTGAATAGACACTGCACAACG,Distal Intergenic,4,120267079,120287349,20271,2,Foxo6-201,-45520,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,9,42,329934,ENSMUSG00000052135,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7312,cg23118330,-0.0000145,0.00000635,-2.281663446,0.023186888,loss,ns,-0.00000179,0.0000108,-0.165799394,0.868422899,neg,ns,-0.003276286,0.003158576,-1.037267043,0.300419823,neg,ns,0.522271414,0.0000283,0.000108623,0.260147904,0.79492239,pos,ns,0.867394612,Gm8176,Gm8176_Intergenic_upstream,1,42259596,42259645,42259596,42259597,50,+,CGTAGTACATTACACTGTGATTTGTCATACATGGCTTGTTAAATAGGAAA,Distal Intergenic,1,42179290,42180388,1099,2,Gm8176-201,-79208,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,13,17,666582,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16849,cg08044881,-0.00000262,0.00000185,-1.415796484,0.157839,loss,ns,-0.000000521,0.00000314,-0.165741155,0.868468694,neg,ns,-0.000421312,0.000921372,-0.457265737,0.647800337,neg,ns,0.188558831,0.000026,0.0000317,0.819296866,0.413246479,pos,ns,0.077352069,Cltc,Cltc_fiveUTR,11,86757250,86757299,86757298,86757299,50,-,GGAGATGCTCCTGAAAACGAATTGGCAGAATCTGGGCCATGGCGCTGTCG,Promoter (<=1kb),11,86694351,86757565,63215,2,Cltc-202,266,Cltc-202;Cltc-201,Cltc;Cltc,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,10,67300,ENSMUSG00000047126,conserved gene and region,11,86757142,86757299,158,*,158,11,0.620253165,0.788208617,0.069620253,0.000000471,CpGisland,TRUE,U1,Pr-A
22859,cg24375257,0.00000511,0.000002,2.559300488,0.010962706,gain,ns,0.000000562,0.00000339,0.165636937,0.868550645,pos,ns,0.003042565,0.000993745,3.061715834,0.002393438,pos,ns,2.620977841,-0.0000795,0.0000342,-2.325999427,0.020663258,neg,ns,0.040556381,Sox6,Sox6_Exon,7,116034469,116034518,116034517,116034518,50,-,GCAATCAGTGTGAGCGGCCATGTCGTAAGTATTCAAAGCATTTCCCGTCG,Promoter (<=1kb),7,115801599,116034513,232915,2,Sox6-208,0,1110004F10Rik-205;Sox6-210;Sox6-202;Sox6-204;Sox6-209;Sox6-214;Sox6-208,1110004F10Rik;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6,-4879;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,57,20679,ENSMUSG00000051910,conserved gene but different region,7,116034285,116034518,234,*,234,19,0.636752137,0.811610077,0.081196581,4.56E-13,CpGisland,TRUE,U3,Pr-B
12045,cg04702586,-0.0000215,0.00000432,-4.979849386,0.00000106,loss,yes,0.00000121,0.00000733,0.165560153,0.868611024,pos,ns,-0.002958332,0.002148104,-1.377182674,0.169449369,neg,ns,0.770960045,-0.000039,0.0000739,-0.527324663,0.598345328,neg,ns,0.939285575,Fap,Fap_Intron,2,62526639,62526688,62526687,62526688,50,-,GCTTCCCACACAGTATATTTTTTGCTAAATGGGAAATTACCATACTGCCG,"Intron (Fap-202/Fap, intron 16 of 25)",2,62500943,62574075,73133,2,Fap-202,47387,Fap-202;Fap-205;Fap-201;Fap-208;Fap-209;Fap-206,Fap;Fap;Fap;Fap;Fap;Fap,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,8,14089,ENSMUSG00000000392,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11647,cg24332215,-0.00000492,0.00000118,-4.1795142,0.000038,loss,ns,-0.000000331,0.000002,-0.165468273,0.868683275,neg,ns,-0.00024539,0.000585353,-0.419216647,0.675348145,neg,ns,0.170472289,0.0000119,0.0000201,0.589027307,0.556271928,pos,ns,0.045075637,E130308A19Rik,E130308A19Rik_fiveUTR,4,59626459,59626508,59626459,59626460,50,+,CGTTCCTATGGACAGACGCACAGACACCTGCAGGTGGGTGAGAGCCCGCG,Promoter (<=1kb),4,59626211,59761439,135229,1,E130308A19Rik-202,248,E130308A19Rik-202;E130308A19Rik-201,E130308A19Rik;E130308A19Rik,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,1,230259,ENSMUSG00000045071,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
23307,cg20654273,6.45E-08,0.00000139,0.046447778,0.962983264,gain,ns,0.00000039,0.00000236,0.165355664,0.868771828,pos,ns,0.001978654,0.000691432,2.861676756,0.004500666,pos,ns,2.346723259,-0.000071,0.0000238,-2.985480843,0.003056824,neg,ns,0.960612533,Eri3,Eri3_Intron,4,117666125,117666174,117666125,117666126,50,-,CGCTTATTACGGTGAGAGAAATCGCCTGCTAATCAAGATGAAATTGCCTT,"Intron (Eri3-201/Eri3, intron 8 of 8)",4,117550365,117674297,123933,1,Eri3-201,115760,Eri3-201;Eri3-206;Eri3-203,Eri3;Eri3;Eri3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,82,97,140546,ENSMUSG00000033423,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20404,cg27130692,0.0000634,0.00000839,7.553459486,4.79E-13,gain,yes,0.00000236,0.0000143,0.165215548,0.868882014,pos,ns,0.004390547,0.004176056,1.051362129,0.293911162,pos,ns,0.53178392,-0.000150397,0.000143614,-1.047227959,0.295810265,neg,ns,0.121119838,Hoxc4,Hoxc4_Intron,15,103032885,103032934,103032885,103032886,50,+,CGATTCCGCGAGACTGATTTATGACGTTTTACAGCCCTATAAAAGCTGTA,"Intron (Hoxc4-202/Hoxc4, intron 1 of 3)",15,103018934,103036405,17472,1,Hoxc4-202,13951,Hoxc4-202;Hoxc4-201,Hoxc4;Hoxc4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,91,15423,ENSMUSG00000075394,conserved gene and region,15,103032736,103032961,226,*,226,19,0.517699115,1.262198707,0.084070797,2.37E-13,CpGisland,TRUE,U13,Hc-P
16535,cg00782708,-0.0000298,0.0000102,-2.937163659,0.003560472,loss,ns,-0.00000285,0.0000173,-0.165149518,0.86893394,neg,ns,-0.016269575,0.005057598,-3.216857994,0.001432991,neg,ns,2.84375661,0.000156815,0.00017393,0.901594261,0.367972377,pos,ns,0.87997322,Camkmt,Camkmt_Intron,17,85393263,85393312,85393311,85393312,50,-,GCCTGCTTTGTGACTTTTCTATTTCATAATTATTTTTAAAACGCAAAACG,"Intron (Camkmt-201/Camkmt, intron 4 of 10)",17,85090552,85458588,368037,1,Camkmt-201,302711,Camkmt-201,Camkmt,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,41,44,73582,ENSMUSG00000071037,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22711,cg10563944,-0.00000381,0.00000304,-1.253306063,0.211038784,loss,ns,-0.000000852,0.00000516,-0.165107129,0.868967275,neg,ns,0.001380536,0.001512545,0.912723689,0.362097149,pos,ns,0.441174895,-0.0000923,0.000052,-1.774153132,0.077019312,neg,ns,0.902701853,Tmem94,Tmem94_Exon,11,115794057,115794106,115794057,115794058,50,+,CGGCCAGATCTTCATGGGCATGGTGTCCTCCCAGTACCAGGCCCGGCTGG,"Exon (Tmem94-201/Tmem94, exon 19 of 32)",11,115765433,115799366,33934,1,Tmem94-201,28624,Tmem94-201;Tmem94-202;Tmem94-208;Tmem94-204,Tmem94;Tmem94;Tmem94;Tmem94,0;0;0;5103,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,71947,ENSMUSG00000020747,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25560,cg06311779,0.000000219,0.00000385,0.056804916,0.954737193,gain,ns,0.00000108,0.00000654,0.164957487,0.869084957,pos,ns,-0.002341569,0.001914865,-1.22283758,0.222319868,neg,ns,0.653021724,-0.00000958,0.0000659,-0.145520866,0.884394215,neg,ns,0.870326285,Ebf3,Ebf3_Exon,7,137231211,137231260,137231211,137231212,50,-,CGGGCCCGCCTCCCGTGTTTGGAATTGTTGTGCACAAACATGTTGTCTGA,"Exon (Ebf3-204/Ebf3, exon 8 of 16)",7,137193673,137314445,120773,2,Ebf3-204,83185,Ebf3-204;Ebf3-201;Ebf3-202;Ebf3-203;Ebf3-208;Ebf3-205;Ebf3-207,Ebf3;Ebf3;Ebf3;Ebf3;Ebf3;Ebf3;Ebf3,0;0;0;0;0;0;-4409,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,84,13593,ENSMUSG00000010476,conserved gene and region,7,137231186,137231371,186,*,186,15,0.569892473,1.010869565,0.080645161,2.30E-10,CpGisland,TRUE,U11,Tr-P
357,cg06685199,-0.00000163,0.00000371,-0.438731316,0.661161842,loss,ns,-0.00000104,0.00000631,-0.164938523,0.869099871,neg,ns,-0.00116368,0.001848929,-0.629380262,0.529563681,neg,ns,0.276081808,0.000114116,0.0000636,1.794707053,0.073674508,pos,ns,0.918074619,Klhl29,Klhl29_Intron,12,5239902,5239951,5239902,5239903,50,+,CGGGTTGTGCAGTGTGAACAATTCACTTTCGTTAAGTACCATATGGCCGC,"Intron (Klhl29-201/Klhl29, intron 2 of 13)",12,5077472,5375682,298211,2,Klhl29-201,135731,Klhl29-201;Klhl29-202,Klhl29;Klhl29,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,23,208439,ENSMUSG00000020627,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17715,cg10759483,0.0000292,0.0000079,3.690765738,0.000264057,gain,ns,-0.00000221,0.0000134,-0.164820527,0.869192668,neg,ns,-0.002092359,0.003932635,-0.53205006,0.595072417,neg,ns,0.22543018,0.000175338,0.000135243,1.296467819,0.195778617,pos,ns,0.865147241,1110051M20Rik,1110051M20Rik_Intron,2,91430591,91430640,91430639,91430640,50,-,CATGCAAATAACAGAAGCAAATCAAAAGACATCCCGCTGCTGTGCTGGCG,"Intron (1110051M20Rik-201/1110051M20Rik, intron 1 of 8)",2,91275068,91444622,169555,2,1110051M20Rik-201,13982,1110051M20Rik-201;1110051M20Rik-203;1110051M20Rik-202;1110051M20Rik-208;1110051M20Rik-206;1110051M20Rik-205;1110051M20Rik-207,1110051M20Rik;1110051M20Rik;1110051M20Rik;1110051M20Rik;1110051M20Rik;1110051M20Rik;1110051M20Rik,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,4,228356,ENSMUSG00000040591,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9060,cg07891322,-0.0000184,0.00000492,-3.737461252,0.000221287,loss,ns,-0.00000138,0.00000836,-0.16482044,0.869192737,neg,ns,-0.008856133,0.002449299,-3.615783464,0.000349382,neg,ns,3.456699651,0.000302372,0.0000842,3.589787056,0.000384583,pos,ns,0.89024773,Gabbr2,Gabbr2_Exon,4,46749518,46749567,46749566,46749567,50,+,CTACCTTGAAATTGAGTAAATTTAATGGTCCCCATTCTCTCCCCATTCCG,"Exon (Gabbr2-201/Gabbr2, exon 8 of 19)",4,46662305,46991873,329569,2,Gabbr2-201,242306,Gabbr2-201,Gabbr2,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,242425,ENSMUSG00000039809,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9009,cg08759703,-0.0000902,0.000014,-6.438465163,4.59E-10,loss,yes,-0.00000392,0.0000238,-0.164817201,0.869195285,neg,ns,-0.021033206,0.006973582,-3.016126355,0.002772143,neg,ns,2.557184345,-0.0000138,0.000239821,-0.057536513,0.954154889,neg,ns,0.82875761,Trim8,Trim8_Exon,19,46515408,46515457,46515408,46515409,50,+,CGTCTGTTCTGTGGACAACTGTTACTGTTCTTCCGTGGCCAACCATGGCG,"Exon (Trim8-201/Trim8, exon 6 of 6)",19,46501702,46516848,15147,1,Trim8-201,13706,Trim8-201;Trim8-202,Trim8;Trim8,0;748,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,15,21,93679,ENSMUSG00000025034,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4517,cg21559622,-0.00000434,0.00000132,-3.283569308,0.001142227,loss,ns,0.00000037,0.00000225,0.164812155,0.869199253,pos,ns,0.001306402,0.000658466,1.984009579,0.048136456,pos,ns,1.317525888,-0.0000193,0.0000226,-0.852849449,0.394401241,neg,ns,0.962933735,Calu,Calu_threeUTR,6,29366096,29366145,29366096,29366097,50,+,CGGAGGTTTAAAATGGCAGACAAGGATGGAGACCTCATTGCCACCAAGGA,3' UTR,6,29348069,29374503,26435,1,Calu-207,18027,Calu-207;Calu-208;Calu-206;Calu-201;Calu-202;Calu-209;Calu-204,Calu;Calu;Calu;Calu;Calu;Calu;Calu,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,9,12321,ENSMUSG00000029767,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18749,cg13870753,0.0000104,0.00000647,1.613552357,0.107641992,gain,ns,-0.00000181,0.000011,-0.16469036,0.86929504,neg,ns,0.000442942,0.00321827,0.137633536,0.890619401,pos,ns,0.050307849,0.0000226,0.000110676,0.204584008,0.838031405,pos,ns,0.79354413,Paqr3,Paqr3_Intergenic_upstream,5,97167836,97167885,97167884,97167885,50,-,GTAAATAACCATCAGTGGGTGGGTCTGGGGGACAGGTCATTAGCCCCACG,Distal Intergenic,5,97082329,97111596,29268,2,Paqr3-201,-56289,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,3,231474,ENSMUSG00000055725,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20399,cg17456953,0.000092,0.0000172,5.359129163,0.000000164,gain,yes,-0.0000048,0.0000292,-0.164687627,0.869297189,neg,ns,0.009184455,0.008547489,1.074520872,0.283424929,pos,ns,0.547561953,-0.000451304,0.000293947,-1.53532219,0.125724666,neg,ns,0.543763183,Hoxc4,Hoxc4_Intron,15,103029353,103029402,103029401,103029402,50,-,ACACCCGAGGTGAAATGCAGGTCACTCTGTCTAACCAATATTAAAATGCG,"Intron (Hoxc4-202/Hoxc4, intron 1 of 3)",15,103018934,103036405,17472,1,Hoxc4-202,10419,Hoxc4-202;Hoxc4-201,Hoxc4;Hoxc4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,91,15423,ENSMUSG00000075394,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
6601,cg18321148,0.000116989,0.0000111,10.53766168,2.15E-22,gain,yes,-0.0000031,0.0000189,-0.164549825,0.869405567,neg,ns,0.000343733,0.005525565,0.062207672,0.950437541,pos,ns,0.022076418,0.000370938,0.000190024,1.952062211,0.051830862,pos,ns,0.260564922,Msx1,Msx1_Promoter,5,37825848,37825897,37825896,37825897,50,+,TCTCCAGGAAACACAAGGGGCTGCCGTGGCCATTTAGGGGTAATTATCCG,Promoter (1-2kb),5,37820485,37824583,4099,2,Msx1-201,-1265,Msx1-201;Msx1-202,Msx1;Msx1,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,8,14,17701,ENSMUSG00000048450,conserved gene and region,5,37825774,37826054,281,*,281,18,0.569395018,0.848800134,0.06405694,1.22E-10,CpGisland,TRUE,U13,Hc-P
6908,cg04529370,0.0000996,0.00001,9.922848374,2.47E-20,gain,yes,-0.00000281,0.0000171,-0.164505716,0.869440258,neg,ns,0.015779103,0.004997394,3.157466028,0.001748097,pos,ns,2.757434588,-0.000379927,0.00017186,-2.210676849,0.027788103,neg,ns,0.101282361,Nrg3,Nrg3_Exon,14,39472548,39472597,39472596,39472597,50,+,GCATGAGGCTGAGCCCCAGGCCGATGAAGCCGATGAACAGAGGTACCACG,Promoter (<=1kb),14,38368952,39473088,1104137,2,Nrg3-201,491,Nrg3-201;Nrg3-202;Nrg3-203;Nrg3-204,Nrg3;Nrg3;Nrg3;Nrg3,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,18183,ENSMUSG00000041014,conserved gene and region,14,39472501,39473171,671,*,671,94,0.767511177,0.951543312,0.140089419,6.22E-87,CpGisland,TRUE,U13,Hc-P
8668,cg03625898,-0.00000817,0.00000491,-1.662794158,0.097364323,loss,ns,-0.00000137,0.00000834,-0.164323077,0.869583905,neg,ns,0.001898147,0.002444259,0.776573596,0.438002505,pos,ns,0.358523405,0.000000855,0.0000841,0.010172916,0.991889871,pos,ns,0.442458569,Gm13478,Gm13478_Intergenic_upstream,2,45515026,45515075,45515026,45515027,50,-,CGTGAAAATGACATTCCAAAGCTGTTTCACTTTCTGACAGGAAATGGAGC,Distal Intergenic,2,45647191,45647603,413,1,Gm13478-201,-132165,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,10,100042661,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23919,cg16166604,0.0000402,0.00000874,4.596868869,0.00000625,gain,ns,-0.00000244,0.0000149,-0.164318536,0.869587477,neg,ns,0.010643441,0.004350658,2.446397775,0.014984536,pos,ns,1.824356687,-0.0000216,0.000149619,-0.14465691,0.885075762,neg,ns,0.123266123,Galnt2l,Galnt2l_Intron,8,121127526,121127575,121127526,121127527,50,+,CGTTTATATATTGGGTGCCCGGAAATTTTTCCAAATAAACACAGCTTGAT,"Intron (Galnt2l-201/Galnt2l, intron 1 of 15)",8,119910841,124345722,4434882,1,Galnt2l-201,1216685,Foxl1-201;Galnt2l-201,Foxl1;Galnt2l,-365;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,28,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
215,cg05676622,-0.000000605,0.00000047,-1.288269056,0.198613028,loss,ns,-0.000000131,0.000000798,-0.164195064,0.86968459,neg,ns,-0.000187272,0.000233894,-0.800673287,0.423934007,neg,ns,0.372701744,0.00000105,0.00000804,0.130880934,0.89595439,pos,ns,0.989532131,Gm21992,Gm21992_Exon,19,4787964,4788013,4787964,4787965,50,-,CGATAGCAGCCGCTCTGGTCTCCCATCCCGGGCGCAGTCCTAAGCCGGCT,"Exon (Rbm4-206/Rbm4, exon 3 of 4)",19,4742913,4811612,68700,2,Gm21992-203,23599,Gm21992-203;Gm21992-206;Gm21992-204;Gm21992-201;Gm21992-205;Gm21992-202;Rbm4-206;Rbm4-203;Rbm4-207;Rbm4-201;Rbm4-204;Rbm4-202;Rbm4-205,Gm21992;Gm21992;Gm21992;Gm21992;Gm21992;Gm21992;Rbm4;Rbm4;Rbm4;Rbm4;Rbm4;Rbm4;Rbm4,0;0;0;0;0;0;0;0;0;0;0;0;5870,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,27,48,102902673,ENSMUSG00000096370,mapped to different genes,19,4787858,4788058,201,*,201,17,0.577114428,1.040816327,0.084577114,4.91E-12,CpGisland,TRUE,U10,Tr-S
3192,cg00120227,0.000002,0.00000214,0.936440718,0.349775257,gain,ns,-0.000000596,0.00000363,-0.164122931,0.869741326,neg,ns,-0.003648947,0.001063107,-3.432343855,0.000679659,neg,ns,3.167709148,0.000161142,0.0000366,4.407598415,0.0000144,pos,ns,0.947605769,Gpat4,Gpat4_Intergenic_downstream,8,23168900,23168949,23168948,23168949,50,+,AATTTTAAAGTGATTAAGTAGTTTAACACCTGTCTCCCGTCACGTCAGCG,Downstream (2-3kb),8,23178797,23180227,1431,2,Gpat4-203,11278,Gpat4-201,Gpat4,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,3,4,102247,ENSMUSG00000031545,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24148,cg08063724,-0.00000158,0.00000351,-0.448756393,0.653920925,loss,ns,-0.000000979,0.00000596,-0.164071028,0.869782149,neg,ns,0.002940086,0.001747376,1.682572142,0.09346482,pos,ns,1.029351827,-0.0000981,0.0000601,-1.632426837,0.103604907,neg,ns,0.040354823,Mycl,Mycl_Exon,4,122996531,122996580,122996531,122996532,50,+,CGACTCGTACCAGCACTATTTCTACGACTATGACTGCGGGGAGGATTTCT,Promoter (<=1kb),4,122995652,122996739,1088,1,Mycl-204,879,Mycl-204;Mycl-202;Mycl-201;Mycl-203;Mycl-205,Mycl;Mycl;Mycl;Mycl;Mycl,0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,4,16918,ENSMUSG00000028654,conserved gene and region,4,122996386,122997032,647,*,647,60,0.678516229,0.806063123,0.092735703,1.21E-43,CpGisland,TRUE,U3,Pr-B
6187,cg01915599,-0.00000302,0.00000181,-1.668592304,0.09620783,loss,ns,-0.000000505,0.00000308,-0.164068194,0.869784379,neg,ns,0.000472977,0.000901554,0.524624199,0.600219406,pos,ns,0.221689967,-0.0000106,0.000031,-0.342192056,0.732438241,neg,ns,0.073229181,Pura,Pura_Exon,18,36287600,36287649,36287648,36287649,50,-,CTGGTGCGCGAGAACCGCAAGTACTACATGGATCTCAAGGAGAACCAGCG,"Exon (Pura-201/Pura, exon 2 of 2)",18,36281097,36292535,11439,1,Pura-201,6503,Pura-201,Pura,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,13,19,19290,ENSMUSG00000043991,conserved gene and region,18,36286687,36288029,1343,*,1343,129,0.68652271,0.823041768,0.096053611,4.14E-95,CpGisland,TRUE,U1,Pr-A
10659,cg17676262,-0.00000545,0.00000229,-2.375610374,0.018127659,loss,ns,-0.000000639,0.00000389,-0.164052382,0.869796816,neg,ns,0.000646912,0.001141005,0.56696652,0.571147221,pos,ns,0.243251932,-0.0000315,0.0000392,-0.803211598,0.422467854,neg,ns,0.937316977,Zfp608,Zfp608_threeUTR,18,54888138,54888187,54888186,54888187,50,-,ACATAAAATAAACTAGATTACAGCATAAAACAAGTAACCAGGCAATGGCG,3' UTR,18,54888048,54990166,102119,2,Zfp608-201,101979,Zfp608-201;Zfp608-204;Zfp608-203;Zfp608-202,Zfp608;Zfp608;Zfp608;Zfp608,0;0;0;7375,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,32,269023,ENSMUSG00000052713,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21317,cg00001209,-0.00000402,0.00000476,-0.844301114,0.399152242,loss,ns,-0.00000133,0.00000809,-0.163880978,0.869931636,neg,ns,-0.001658466,0.002370303,-0.69968519,0.484648622,neg,ns,0.314573018,-0.0000259,0.0000815,-0.317376712,0.75117143,neg,ns,0.911527656,Gm2736,Gm2736_Intergenic_upstream,13,107337144,107337193,107337192,107337193,50,+,CTTAACATTATAAGCAGAACAAAGTGGTACAAAATGTATTCAGCCTCACG,Distal Intergenic,13,107348204,107348516,313,1,Gm2736-201,-11011,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,2,100040366,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20759,cg18388380,0.0000664,0.0000115,5.787916005,1.75E-08,gain,yes,0.00000319,0.0000195,0.163870737,0.869939691,pos,ns,0.014575906,0.005706339,2.554335704,0.011116933,pos,ns,1.954015012,-0.000337302,0.000196241,-1.718821069,0.08664528,neg,ns,0.030561235,Rgs7bp,Rgs7bp_fiveUTR,13,105054174,105054223,105054174,105054175,50,-,CGGCTGGGGCGCTTTTTGCGCCCATTCGGTGCAGAACTCATGCATACACA,Promoter (<=1kb),13,104945904,105054930,109027,2,Rgs7bp-201,707,Rgs7bp-201,Rgs7bp,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,7,52882,ENSMUSG00000021719,conserved gene but different region,13,105054061,105054769,709,*,709,77,0.682651622,0.937379808,0.108603667,1.56E-61,CpGisland,TRUE,U3,Pr-B
2781,cg17363349,0.000000623,0.000000649,0.959458121,0.33807572,gain,ns,0.000000181,0.0000011,0.163868543,0.869941417,pos,ns,0.000666863,0.000323124,2.063799658,0.039868683,pos,ns,1.399368114,-0.0000179,0.0000111,-1.611768548,0.108029919,neg,ns,0.022721277,2510009E07Rik,2510009E07Rik_Exon,16,21694203,21694252,21694203,21694204,50,+,CGGCTCGACTTACAGTGACACCATCCTAGGTGACAGCACCAGTGCAGCTT,Promoter (<=1kb),16,21649045,21694665,45621,2,2510009E07Rik-201,413,2510009E07Rik-201;2510009E07Rik-203;2510009E07Rik-202;2510009E07Rik-204,2510009E07Rik;2510009E07Rik;2510009E07Rik;2510009E07Rik,0;-972;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,72190,ENSMUSG00000043391,conserved gene but different region,16,21694142,21694204,63,*,63,11,0.761904762,1.203125,0.174603175,1.39E-11,CpGisland,TRUE,U1,Pr-A
409,cg19024026,-0.0000121,0.0000104,-1.154349156,0.249246155,loss,ns,-0.00000291,0.0000177,-0.163829933,0.869971786,neg,ns,-0.002073078,0.005199294,-0.398722985,0.690371831,neg,ns,0.160916937,-0.000275488,0.000178803,-1.540731427,0.12440228,neg,ns,0.652538256,Gm5652,Gm5652_Intergenic_downstream,12,5552866,5552915,5552866,5552867,50,+,CGAGACTTGCAGACTGATTGCTTTCATTAACTTTAATTGGATTCTTTCGC,Distal Intergenic,12,5589617,5590624,1008,2,Gm5652-201,37709,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,435292,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22855,cg04435546,0.0000121,0.00000257,4.706884023,0.0000038,gain,ns,-0.000000716,0.00000437,-0.163815856,0.869982859,neg,ns,0.004760507,0.001280102,3.71884891,0.000237485,pos,ns,3.624363023,-0.000101519,0.000044,-2.306066059,0.02176647,neg,ns,0.082684763,Sox6,Sox6_Exon,7,116034445,116034494,116034445,116034446,50,-,CGATGGTTAGTGCTGTCAATCTTGGCAATCAGTGTGAGCGGCCATGTCGT,"Exon (Sox6-208/Sox6, exon 1 of 3)",7,115471344,116038744,567401,2,Sox6-204,4250,1110004F10Rik-205;Sox6-210;Sox6-202;Sox6-204;Sox6-209;Sox6-214;Sox6-208,1110004F10Rik;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6,-4903;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,57,20679,ENSMUSG00000051910,conserved gene and region,7,116034285,116034518,234,*,234,19,0.636752137,0.811610077,0.081196581,4.56E-13,CpGisland,TRUE,U3,Pr-B
15577,cg25201652,-0.0000204,0.00000754,-2.701270249,0.007287488,loss,ns,-0.0000021,0.0000128,-0.163800934,0.869994596,neg,ns,-0.003161158,0.003754184,-0.842036067,0.400416888,neg,ns,0.397487614,-0.000229885,0.000129106,-1.780591146,0.075958511,neg,ns,0.852501141,Gm50297,Gm50297_Intergenic_downstream,18,81897933,81897982,81897933,81897934,50,-,CGGATTGGTAATACAGTAATTGAGCAGATTTATTGCCATCTCCTTGAGCT,Distal Intergenic,18,82261062,82261262,201,2,Gm50297-201,363329,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,17,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U14,Hc-H
10334,cg22624386,0.00000425,0.00000328,1.294731791,0.196376283,gain,ns,0.000000913,0.00000558,0.163693539,0.870079072,pos,ns,0.000233716,0.001634804,0.14296237,0.886412778,pos,ns,0.052363992,0.0000372,0.0000562,0.660807578,0.509226487,pos,ns,0.949190303,Ext1,Ext1_threeUTR,15,53068755,53068804,53068803,53068804,50,+,AGCGGCATGTAGCCAAACCAGCTGGCAAACGTATTCATGCAGCTCTGTCG,3' UTR,15,53064038,53346159,282122,2,Ext1-201,277355,Ext1-201;Ext1-203,Ext1;Ext1,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,16,14042,ENSMUSG00000061731,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21057,cg17848875,0.0000201,0.0000072,2.791665142,0.005569205,gain,ns,0.000002,0.0000122,0.16364456,0.870117599,pos,ns,0.002216652,0.003585669,0.618197473,0.536899092,pos,ns,0.270107331,0.0000231,0.000123311,0.187022868,0.851765044,pos,ns,0.865571735,Strada,Strada_threeUTR,11,106184570,106184619,106184618,106184619,50,+,AGTTCCAAATCTCTTAAGCCCTCAACAATGAACTTTTCCGAGACCCACCG,3' UTR,11,106163330,106202168,38839,2,Strada-204,17549,Strada-204;Strada-201;Strada-202;Strada-205;Strada-203,Strada;Strada;Strada;Strada;Strada,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,2,72149,ENSMUSG00000069631,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22846,cg25335753,-0.0000812,0.000014,-5.799142634,1.64E-08,loss,yes,-0.00000389,0.0000238,-0.163582855,0.870166137,neg,ns,0.025865763,0.006966438,3.71291105,0.000242884,pos,ns,3.614600566,-0.001412764,0.000239575,-5.896953743,9.67E-09,neg,yes,0.741429528,Prkab1,Prkab1_Exon,5,116020013,116020062,116020013,116020014,50,-,CGGAGCACTTTTGGGAATCCACCATTAAAGCATCAAATACTTCAAAGTCA,"Exon (Prkab1-201/Prkab1, exon 4 of 7)",5,116013586,116024462,10877,2,Prkab1-201,4400,Prkab1-201;Prkab1-202;Prkab1-205;Prkab1-206;Prkab1-203;Prkab1-208;Prkab1-207;Prkab1-204;Prkab1-209,Prkab1;Prkab1;Prkab1;Prkab1;Prkab1;Prkab1;Prkab1;Prkab1;Prkab1,0;0;-4852;-1802;0;0;0;0;4397,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,19079,ENSMUSG00000029513,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22407,cg09428433,0.0000282,0.00000523,5.395960081,0.000000136,gain,yes,0.00000145,0.00000888,0.163573403,0.870173572,pos,ns,0.006955787,0.002602181,2.673060899,0.007914192,pos,ns,2.101593411,-0.000246801,0.0000895,-2.757904196,0.006162574,neg,ns,0.066063515,Trabd2b,Trabd2b_Promoter,4,114405934,114405983,114405982,114405983,50,+,GGAAGTTTGGAAAGTTGGGAAGTGGCTGCTGCGGGCTTCGCCTCCCTCCG,Promoter (<=1kb),4,114406724,114615098,208375,1,Trabd2b-201,-741,Trabd2b-201,Trabd2b,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,5,666048,ENSMUSG00000070867,conserved gene and region,4,114405900,114406950,1051,*,1051,125,0.773549001,0.820427153,0.118934348,5.09E-105,CpGisland,TRUE,U3,Pr-B
2589,cg04867482,-0.00000156,0.000000631,-2.472857165,0.013939819,loss,ns,0.000000175,0.00000107,0.163565289,0.870179955,pos,ns,0.000071,0.000314267,0.225977216,0.821368057,pos,ns,0.085462191,-0.0000204,0.0000108,-1.884145579,0.060480885,neg,ns,0.011065138,Eif4g1,Eif4g1_fiveUTR,16,20672801,20672850,20672849,20672850,50,-,GGGAGCCGGAAATGGTTGTGGACTACGTCTGTGCGGCTGCGTGGGGCTCG,Promoter (<=1kb),16,20672820,20678639,5820,1,Eif4g1-225,0,Eif4g1-220;Eif4g1-208;Eif4g1-201;Eif4g1-206;Eif4g1-216;Eif4g1-202;Eif4g1-217;Eif4g1-207;Eif4g1-218;Eif4g1-225;Eif4g1-214;Eif4g1-203;Eif4g1-222;Eif4g1-221;Eif4g1-205;Eif4g1-212;Eif4g1-204;Eif4g1-215;Eif4g1-219,Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,7,10,208643,ENSMUSG00000045983,conserved gene and region,16,20672514,20673561,1048,*,1048,121,0.738549618,0.847148736,0.115458015,6.53E-100,CpGisland,TRUE,U1,Pr-A
3311,cg15720084,-0.00000156,0.000000475,-3.284123037,0.001140061,loss,ns,-0.000000132,0.000000807,-0.163538245,0.870201228,neg,ns,-0.000605541,0.000236312,-2.562459632,0.010865567,neg,ns,1.963947615,0.00000711,0.00000813,0.874528199,0.382507682,pos,ns,0.990747006,Kcnma1,Kcnma1_threeUTR,14,23526566,23526615,23526614,23526615,50,+,CCGAATTTATTCCGACTCAGGATGAGAGCAGCAATTTCGGGCACGTAGCG,3' UTR,14,23289431,23803304,513874,2,Kcnma1-207,276689,Kcnma1-207;Kcnma1-210;Kcnma1-205;Kcnma1-201;Kcnma1-208;Kcnma1-209;Kcnma1-212;Kcnma1-204;Kcnma1-202;Kcnma1-211;Kcnma1-229;Kcnma1-234;Kcnma1-223;Kcnma1-214;Kcnma1-216;Kcnma1-219;Kcnma1-220;Kcnma1-224;Kcnma1-233;Kcnma1-236;Kcnma1-237;Kcnma1-213;Kcnma1-228;Kcnma1-203;Kcnma1-206;Kcnma1-221;Kcnma1-225;Kcnma1-226;Kcnma1-230;Kcnma1-235;Kcnma1-217;Kcnma1-238;Kcnma1-231;Kcnma1-218;Kcnma1-222;Kcnma1-232,Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,13,41,16531,ENSMUSG00000063142,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12372,cg01635585,-0.0000114,0.00000775,-1.471924823,0.142055628,loss,ns,-0.00000215,0.0000132,-0.163443831,0.870275496,neg,ns,-0.00044629,0.003855696,-0.115748232,0.907927022,neg,ns,0.041949058,-0.000131025,0.000132597,-0.988146612,0.323851478,neg,ns,0.923329692,Gm49627,Gm49627_Intergenic_upstream,16,64062808,64062857,64062856,64062857,50,-,AGAGGGTTATCCATTCAGGCAAAGCTGAATGACACTGACAGAACCCTGCG,Distal Intergenic,16,63954086,63955130,1045,2,Gm49627-201,-107727,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27299,cg24084358,0.0000528,0.0000133,3.985311843,0.0000841,gain,ns,0.00000368,0.0000225,0.163434249,0.870283034,pos,ns,0.022195532,0.006594905,3.36555762,0.000859991,pos,ns,3.065506085,-0.000672458,0.000226798,-2.965005831,0.003261698,neg,ns,0.395565736,Hnf4a,Hnf4a_fiveUTR,2,163506768,163506817,163506768,163506769,50,+,CGTATCCACCCACCTTGGGTGATTAGAAGAATCAATAAGATAACCGGGCG,Promoter (<=1kb),2,163506808,163552635,45828,1,Hnf4a-205,0,Hnf4a-205;R3hdml-201,Hnf4a;R3hdml,0;14450,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,6,15378,ENSMUSG00000017950,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4643,cg01794939,-0.00000894,0.00000802,-1.114977706,0.265723598,loss,ns,0.00000223,0.0000136,0.163431712,0.87028503,pos,ns,-0.004510365,0.003992084,-1.12982719,0.259422495,neg,ns,0.585992368,-0.000121011,0.000137287,-0.881445008,0.378759906,neg,ns,0.769011264,Pik3c3,Pik3c3_Intergenic_upstream,18,30027575,30027624,30027623,30027624,50,+,ACACTGACACCATGATGACTGACGTTGGTTTTGATTTGACATTTTAGCCG,Distal Intergenic,18,30272747,30348126,75380,1,Pik3c3-203,-245123,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,5,225326,ENSMUSG00000033628,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19710,cg22108362,-0.00000581,0.00000317,-1.833581568,0.067674758,loss,ns,-0.000000879,0.00000538,-0.163372527,0.870331586,neg,ns,0.00076312,0.001576922,0.483930307,0.628777007,pos,ns,0.201503348,-0.0000261,0.0000542,-0.48088206,0.630939538,neg,ns,0.918649589,Dlg3,Dlg3_Exon,X,100808083,100808132,100808083,100808084,50,+,CGCCTCTCTCGAAAGTTTCCATTTTACAAGAGCAAAGAAAACATGGCCCA,"Exon (Dlg3-206/Dlg3, exon 12 of 19)",20,100767722,100818406,50685,1,Dlg3-201,40361,Dlg3-201;Dlg3-204;Dlg3-202;Dlg3-206;Dlg3-203;Dlg3-208;Dlg3-207;Dlg3-205,Dlg3;Dlg3;Dlg3;Dlg3;Dlg3;Dlg3;Dlg3;Dlg3,0;0;0;0;0;0;11506;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,11,53310,ENSMUSG00000000881,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8971,cg12288032,0.0000249,0.00000898,2.776944982,0.005821243,gain,ns,0.00000249,0.0000153,0.163124884,0.870526396,pos,ns,0.006104272,0.004471723,1.365082894,0.173216855,pos,ns,0.761409851,-0.0000898,0.000153782,-0.583871751,0.559731192,neg,ns,0.242224391,4931429L15Rik,4931429L15Rik_Intergenic_upstream,9,46442913,46442962,46442913,46442914,50,-,CGGGGCTAATGATAATTAACACTTGGGGCGCGTTTTGTCTTCCAAGTGCT,Distal Intergenic,9,46303361,46319986,16626,2,4931429L15Rik-201,-122976,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,12,22,74361,ENSMUSG00000056617,mapped to different genes,9,46442854,46443089,236,*,236,16,0.533898305,0.955223881,0.06779661,6.99E-10,CpGisland,TRUE,U13,Hc-P
23584,cg04413953,0.00000178,0.00000178,0.99558824,0.320226725,gain,ns,0.000000494,0.00000303,0.162956808,0.870658618,pos,ns,0.00225383,0.000887865,2.538481783,0.011622471,pos,ns,1.934701544,-0.0000377,0.0000305,-1.235362212,0.21763113,neg,ns,0.9686478,Slc2a1,Slc2a1_Exon,4,119132518,119132567,119132566,119132567,50,-,GTCCTTTGAGATGCTGATCCTGGGCCGCTTCATCATCGGTGTGTACTGCG,"Exon (Slc2a1-201/Slc2a1, exon 4 of 10)",4,119108711,119137983,29273,1,Slc2a1-201,23807,Slc2a1-201;Slc2a1-202;Slc2a1-203;Slc2a1-205;Slc2a1-204,Slc2a1;Slc2a1;Slc2a1;Slc2a1;Slc2a1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,20525,ENSMUSG00000028645,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
573,cg05309481,-0.0000261,0.000023,-1.134266052,0.257559298,loss,ns,-0.00000637,0.0000391,-0.162816732,0.870768817,neg,ns,0.037931012,0.011457128,3.310691125,0.001040515,pos,ns,2.982751771,-0.001420871,0.00039401,-3.606182413,0.000362014,neg,ns,0.392581766,Tox,Tox_Intron,4,6913797,6913846,6913797,6913798,50,-,CGTTTGAGGATAATTAACATGGTATTTTTATAATACTGATACATCAAATG,"Intron (Tox-201/Tox, intron 1 of 8)",4,6686353,6990799,304447,2,Tox-201,76953,Tox-201;Tox-203;Tox-204,Tox;Tox;Tox,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,15,252838,ENSMUSG00000041272,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
21897,cg21620558,-0.0000119,0.0000039,-3.042714356,0.002545092,loss,ns,-0.00000108,0.00000662,-0.162796651,0.870784614,neg,ns,-0.003266637,0.00194087,-1.683078954,0.093366574,neg,ns,1.029808577,-0.0000304,0.0000667,-0.45511255,0.649346839,neg,ns,0.059986547,Cdkn2c,Cdkn2c_fiveUTR,4,109666695,109666744,109666695,109666696,50,-,CGCTTTTTGAGTTGAAAAACCCGCCCCCATTTTAACGGCAGAGTTTTAAG,Promoter (<=1kb),4,109660876,109667189,6314,2,Cdkn2c-202,445,Cdkn2c-201;Cdkn2c-202,Cdkn2c;Cdkn2c,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,8,13,12580,ENSMUSG00000028551,conserved gene and region,4,109666592,109666961,370,*,370,38,0.645945946,0.99378004,0.102702703,1.21E-29,CpGisland,TRUE,U1,Pr-A
1694,cg10392682,-0.000000645,0.00000147,-0.438499666,0.661329539,loss,ns,0.000000407,0.0000025,0.162732008,0.87083547,pos,ns,0.001087313,0.000732296,1.484799801,0.138612983,pos,ns,0.85819609,-0.0000179,0.0000252,-0.709768679,0.478381121,neg,ns,0.959768268,Tle4,Tle4_Intron,19,14590457,14590506,14590457,14590458,50,-,CGGCAGTTTTGCTTTATTTGCTCCATGATGGGCAGCAGTCGGCCTCTTCA,"Intron (Tle4-201/Tle4, intron 4 of 19)",19,14448150,14598051,149902,2,Tle4-201,7545,Tle4-201;Tle4-202;Tle4-203,Tle4;Tle4;Tle4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,29,21888,ENSMUSG00000024642,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7016,cg16125047,-0.00000216,0.00000455,-0.474905198,0.635188945,loss,ns,-0.00000126,0.00000773,-0.162718023,0.870846473,neg,ns,-0.000737015,0.002263948,-0.325544135,0.744988905,neg,ns,0.127850195,-0.00008,0.0000779,-1.027056008,0.305194807,neg,ns,0.944432461,Lsamp,Lsamp_Intron,16,40643097,40643146,40643097,40643098,50,+,CGAAACGTTTGGGCCTTTGAAATTGAAATGGATTTCAGTCTTCTTTATAT,"Intron (Lsamp-207/Lsamp, intron 1 of 2)",16,39984361,40979709,995349,1,Lsamp-207,658736,Lsamp-207;Lsamp-206;Lsamp-208;Lsamp-210;Lsamp-209,Lsamp;Lsamp;Lsamp;Lsamp;Lsamp,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,23,268890,ENSMUSG00000061080,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21294,cg00247972,-0.0000483,0.0000115,-4.181369663,0.0000377,loss,ns,-0.00000319,0.0000196,-0.162639938,0.870907904,neg,ns,-0.016122568,0.005746345,-2.805708482,0.00533802,neg,ns,2.272619812,0.00027693,0.000197616,1.401350637,0.162109578,pos,ns,0.735511699,Tceanc2,Tceanc2_Intron,4,107139973,107140022,107140021,107140022,50,-,GAACAAGGCCATGTGCTTTGTGACAGGGACCTCATTCACAACCCCTGCCG,"Intron (Tceanc2-202/Tceanc2, intron 4 of 4)",4,107134155,107178547,44393,2,Tceanc2-202,38525,Tceanc2-202;Tceanc2-204;Tceanc2-205;Tceanc2-201;Tceanc2-203;Tceanc2-208,Tceanc2;Tceanc2;Tceanc2;Tceanc2;Tceanc2;Tceanc2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,2,66526,ENSMUSG00000028619,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2448,cg00519301,-0.0000282,0.00000754,-3.739444058,0.000219624,loss,ns,-0.00000208,0.0000128,-0.162520511,0.871001862,neg,ns,-0.003455455,0.003751465,-0.921094942,0.357717105,neg,ns,0.446460293,-0.0000639,0.000129013,-0.495267996,0.620761831,neg,ns,0.874985619,Olig3,Olig3_Intergenic_downstream,10,19471822,19471871,19471822,19471823,50,-,CGTGACTCATTAAAACAAGCATTGGTCGCCAACATTGTGGAGTGTGTGAA,Distal Intergenic,10,19356533,19358604,2072,1,Olig3-201,115338,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,9,94222,ENSMUSG00000045591,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7001,cg04832088,-0.0000142,0.00000946,-1.500255525,0.134565978,loss,ns,-0.00000261,0.0000161,-0.162495818,0.87102129,neg,ns,-0.008683753,0.004707675,-1.84459472,0.066050397,neg,ns,1.18012457,0.0000234,0.000161897,0.144483288,0.885212738,pos,ns,0.812508846,Gm7382,Gm7382_Promoter,15,40529278,40529327,40529326,40529327,50,-,CATGAAACCCATCAGCTGATGAGTGAAAATCCCTGGTTTCTAATTAATCG,Promoter (8-9kb),15,40537321,40538425,1105,1,Gm7382-201,-8043,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,17,22,664872,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5494,cg02791084,-0.00000353,0.00000434,-0.812184271,0.417309135,loss,ns,-0.0000012,0.00000738,-0.162435349,0.871068864,neg,ns,-0.002783835,0.002161642,-1.287833467,0.198764456,neg,ns,0.701661276,0.0000195,0.0000743,0.262061773,0.793447866,pos,ns,0.922855716,Pbx3,Pbx3_Intron,2,34107794,34107843,34107794,34107795,50,-,CGAGGTGTTTTGAATAGGAGCAGCTGTGAAGGAGATGGGACGTTATAAAC,"Intron (Gm38389-201/Gm38389-201, intron 1 of 1)",2,34172873,34288852,115980,2,Pbx3-210,181058,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,82,18516,ENSMUSG00000038718,conserved gene but different region,2,34107707,34107835,129,*,129,11,0.519379845,1.351428571,0.085271318,5.89E-08,CpGisland,TRUE,U15,NS
25459,cg13772153,-0.0000159,0.00000621,-2.566482369,0.010742987,loss,ns,-0.00000171,0.0000106,-0.16236819,0.871121702,neg,ns,-0.001518792,0.003092963,-0.491047772,0.623740102,neg,ns,0.204996333,-0.000111197,0.000106367,-1.045415912,0.296645256,neg,ns,0.825891631,Glra4,Glra4_Exon,X,136767257,136767306,136767257,136767258,50,-,CGGGCAGGGGCAGCATCCATGTTGATCCAGAAGGAGACCCAGGACAGGAT,"Exon (Glra4-201/Glra4, exon 7 of 9)",20,136757674,136780141,22468,2,Glra4-201,12835,Glra4-201;Glra4-202,Glra4;Glra4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,14657,ENSMUSG00000018595,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7309,cg26305616,-0.0000171,0.00000952,-1.795740147,0.07350959,loss,ns,-0.00000262,0.0000162,-0.162213999,0.871243016,neg,ns,-0.006828381,0.004736704,-1.441589372,0.150427654,neg,ns,0.822672318,0.0000829,0.000162895,0.509150445,0.611008985,pos,ns,0.668497217,Gm8176,Gm8176_Intergenic_upstream,1,42258056,42258105,42258104,42258105,50,-,AAGCATAAATAAGCAGTTTGTAATCAGAAAGCTGACATCATCGCAGCTCG,Distal Intergenic,1,42179290,42180388,1099,2,Gm8176-201,-77717,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,13,17,666582,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18653,cg18757062,0.000109969,0.000015,7.333347043,1.97E-12,gain,yes,0.00000413,0.0000255,0.162191855,0.871260439,pos,ns,0.028657498,0.007463537,3.839666996,0.000149374,pos,ns,3.825723884,-0.000269085,0.00025667,-1.048366044,0.295286644,neg,ns,0.399730868,Skap1,Skap1_Intron,11,96579223,96579272,96579271,96579272,50,-,TAAAAAATGGCAATCGGATAGTACCAGCGGCAGGTCAAGTTTACCATCCG,"Intron (Skap1-204/Skap1, intron 4 of 12)",11,96464593,96758941,294349,1,Skap1-204,114630,Skap1-204;Skap1-203;Skap1-209;Skap1-201;Skap1-205;Skap1-206;Skap1-208,Skap1;Skap1;Skap1;Skap1;Skap1;Skap1;Skap1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,40,46,78473,ENSMUSG00000057058,conserved gene and region,11,96578991,96579282,292,*,292,18,0.547945206,0.829545455,0.061643836,2.30E-10,CpGisland,TRUE,U9,En-Pp
10028,cg05215308,-0.000000378,0.00000306,-0.123650909,0.901671814,loss,ns,0.000000843,0.0000052,0.162165949,0.871280821,pos,ns,0.000837412,0.001523185,0.549777325,0.582867971,pos,ns,0.234429809,-0.0000578,0.0000524,-1.102858216,0.270944164,neg,ns,0.922391923,Skap2,Skap2_Exon,6,51993405,51993454,51993405,51993406,50,-,CGAAGCATCACTGAAGTGTGCTTGAATTTCATTAGAAGATATAACTTATG,"Exon (Skap2-202/Skap2, exon 4 of 4)",6,51857422,52012549,155128,2,Skap2-205,19095,Skap2-205;Skap2-201;Skap2-202,Skap2;Skap2;Skap2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,19,54353,ENSMUSG00000059182,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9788,cg14219212,0.00000515,0.00000285,1.808801521,0.07145058,gain,ns,0.000000784,0.00000483,0.162150672,0.871292841,pos,ns,-0.003879005,0.001416134,-2.739151531,0.006516339,neg,ns,2.185996307,0.0000766,0.0000487,1.57321218,0.116689709,pos,ns,0.923556243,Gm48777,Gm48777_Intron,12,50873857,50873906,50873905,50873906,50,+,AGTCCGTAAATGAGCCGGCAATTATTGCTGTATTACCACTACCAGCTCCG,"Intron (Gm48779-201/Gm48779-201, intron 6 of 8)",12,50895099,50895471,373,2,Gm48777-201,21565,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,10,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11576,cg12012631,-0.00000741,0.0000149,-0.497465349,0.619213593,loss,ns,0.0000041,0.0000253,0.162109308,0.871325387,pos,ns,-0.009368834,0.007418335,-1.262929469,0.207563627,neg,ns,0.682848748,0.000148546,0.000255116,0.582267348,0.560809846,pos,ns,0.777190106,Fgf13,Fgf13_Exon,X,59250839,59250888,59250839,59250840,50,+,CGGGCAGCAGAAGATTTCGTGACACTTAGCACGAAAGGGGGACTCTTTTT,"Exon (Fgf13-205/Fgf13, exon 2 of 3)",20,59062145,59568071,505927,2,Fgf13-203,317183,Fgf13-203;Fgf13-205;Fgf13-206;Fgf13-208,Fgf13;Fgf13;Fgf13;Fgf13,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,9,14168,ENSMUSG00000031137,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24682,cg19904709,0.00000597,0.00000168,3.56168336,0.00042637,gain,ns,-0.000000462,0.00000285,-0.162095804,0.871336012,neg,ns,0.002874747,0.000834557,3.44463693,0.000650584,pos,ns,3.186696878,-0.0000633,0.0000287,-2.205963974,0.028119825,neg,ns,0.060745274,Zfp629,Zfp629_fiveUTR,7,127615248,127615297,127615248,127615249,50,-,CGGAGCAGGAAGTGACCCCAGCTTCCCGGGCCCCTCTAGCCTGGAGTCAG,Promoter (<=1kb),7,127607031,127615272,8242,2,Zfp629-202,0,Zfp629-201;Zfp629-203;Zfp629-202;Zfp629-208;Zfp629-207;Zfp629-206;Zfp629-205;Zfp629-204;Zfp629-209,Zfp629;Zfp629;Zfp629;Zfp629;Zfp629;Zfp629;Zfp629;Zfp629;Zfp629,0;0;0;0;0;0;-888;-48;-883,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,4,320683,ENSMUSG00000045639,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
9701,cg17494980,0.0000249,0.00000465,5.369597643,0.000000155,gain,yes,-0.00000128,0.00000789,-0.162024252,0.871392309,neg,ns,0.004300271,0.002311989,1.859987173,0.063834332,pos,ns,1.19494568,-0.0000842,0.0000795,-1.058950788,0.290446606,neg,ns,0.057928297,Gm7481,Gm7481_Exon,12,50120547,50120596,50120547,50120548,50,+,CGAGGGTCCTTAGTGAAGGTGTTTGTTGTTAAATAGAACAATTCAGCTGT,"Exon (Gm40418-201/Gm40418-201, exon 1 of 3)",12,49840757,49841751,995,2,Gm7481-201,-278796,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,37,665077,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
535,cg06817822,0.00000761,0.0000103,0.739175556,0.460359722,gain,ns,0.00000283,0.0000175,0.161988564,0.871420389,pos,ns,0.001146702,0.00512636,0.223687403,0.823147887,pos,ns,0.084522132,0.000124333,0.000176295,0.705256881,0.481179962,pos,ns,0.22385838,Dlx6,Dlx6_Promoter,6,6856388,6856437,6856388,6856389,50,-,CGAGCAACACATTGAATTAATCTGACTGTACGGTTTTAATTACAGTGAGG,Promoter (6-7kb),6,6863334,6868568,5235,1,Dlx6-202,-6946,NA,NA,NA,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,9,36,13396,ENSMUSG00000029754,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
19100,cg08807198,0.000102282,0.0000141,7.229994592,3.79E-12,gain,yes,0.00000389,0.000024,0.161978128,0.871428601,pos,ns,0.012096512,0.007041045,1.717999624,0.086795222,pos,ns,1.061504182,0.000304614,0.000242141,1.258001568,0.20933792,pos,ns,0.492074811,Foxd1,Foxd1_threeUTR,13,98356584,98356633,98356584,98356585,50,-,CGTATTCTTTACAAGGAGTATTGTAAATTTTACTGGCAATTATTATTGTA,3' UTR,13,98354242,98359305,5064,1,Foxd1-201,2342,Foxd1-201,Foxd1,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,4,15229,ENSMUSG00000078302,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
23453,cg14002443,-0.0000429,0.0000101,-4.244290051,0.000029,loss,ns,0.00000278,0.0000172,0.161858905,0.871522408,pos,ns,0.003935249,0.005034215,0.781700586,0.434987167,pos,ns,0.361523555,-0.00024166,0.000173126,-1.395857632,0.163756256,neg,ns,0.595999242,Rbfox3,Rbfox3_Exon,11,118496477,118496526,118496477,118496478,50,+,CGGTGCCAGCCCCGCCCATGGGACTGGCATTTTAACAAGCGTTTGCTCCA,"Exon (Rbfox3-205/Rbfox3, exon 11 of 14)",11,118489762,118909550,419789,2,Rbfox3-205,413024,Rbfox3-205;Rbfox3-203;Rbfox3-201;Rbfox3-202;Rbfox3-204;Rbfox3-206;Rbfox3-210,Rbfox3;Rbfox3;Rbfox3;Rbfox3;Rbfox3;Rbfox3;Rbfox3,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,13,52897,ENSMUSG00000025576,conserved gene and region,11,118496386,118496517,132,*,132,9,0.659090909,0.675,0.068181818,0.00000904,CpGisland,TRUE,U11,Tr-P
12693,cg04470013,0.0000139,0.0000123,1.124922068,0.261492289,gain,ns,0.00000338,0.0000209,0.161676919,0.871665603,pos,ns,-0.011962058,0.006129362,-1.951599133,0.051886118,neg,ns,1.284948824,0.000403831,0.000210788,1.915812676,0.056308585,pos,ns,0.551607295,Gm11220,Gm11220_Intergenic_downstream,4,66691821,66691870,66691821,66691822,50,-,CGATTCTGTATCAGCAGGAGAAGAAAGGTGGAGAAACCACCTCAAGCCAA,Distal Intergenic,4,66725070,66725544,475,2,Gm11220-201,33723,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,667499,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9999,cg04531442,-0.00000283,0.00000649,-0.435516368,0.663490741,loss,ns,0.00000178,0.000011,0.16167281,0.871668836,pos,ns,0.001880403,0.003230857,0.582013675,0.560980485,pos,ns,0.251052246,-0.0000647,0.000111109,-0.582000634,0.560989258,neg,ns,0.848648493,Satb1,Satb1_Exon,17,51807808,51807857,51807856,51807857,50,-,AGCTGAAATCTCCTATTTAGGAATTTATGGAACTTACATGTTTGCAGGCG,"Exon (Satb1-209/Satb1, exon 1 of 1)",17,51736187,51832672,96486,2,Satb1-208,24815,Satb1-208;Satb1-213;Satb1-204;Satb1-214;Satb1-203;Satb1-211;Satb1-207;Satb1-206;Satb1-202;Satb1-201;Satb1-209;Satb1-210,Satb1;Satb1;Satb1;Satb1;Satb1;Satb1;Satb1;Satb1;Satb1;Satb1;Satb1;Satb1,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,36,20230,ENSMUSG00000023927,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4708,cg27188357,-0.000000376,0.0000031,-0.121534974,0.903346056,loss,ns,0.000000851,0.00000526,0.161648267,0.871688148,pos,ns,0.001906331,0.001541762,1.236462652,0.217222608,pos,ns,0.663094976,-0.00003,0.000053,-0.5662259,0.571649893,neg,ns,0.927528104,Pik3c3,Pik3c3_Intergenic_upstream,18,30197786,30197835,30197834,30197835,50,-,TTGCAAATCTGCATTAACTCACTCTGTCTCGCAAATAATCAGGGCCTACG,Distal Intergenic,18,30272747,30348126,75380,1,Pik3c3-203,-74961,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,5,225326,ENSMUSG00000033628,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26028,cg14628884,-0.00000953,0.00000197,-4.839750704,0.00000205,loss,ns,-0.000000541,0.00000335,-0.161644846,0.87169084,neg,ns,-0.001271603,0.00097998,-1.297580748,0.195396172,neg,ns,0.709083949,0.00000389,0.0000337,0.115406363,0.908197753,pos,ns,0.950984868,Kcnq1,Kcnq1_Exon,7,143251607,143251656,143251607,143251608,50,+,CGCGATGTTGTGATGAAGGTGAAAAGATCGCTCTTAATTAGATTAAAAAC,"Exon (Gm27395-201/Gm27395-201, exon 1 of 1)",7,143107254,143427042,319789,1,Kcnq1-201,144353,Kcnq1-201;Kcnq1-202,Kcnq1;Kcnq1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,9,16535,ENSMUSG00000009545,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U14,Hc-H
6208,cg25039439,-0.000033,0.00000631,-5.230866315,0.000000311,loss,yes,-0.00000173,0.0000107,-0.161579574,0.8717422,neg,ns,-0.007640003,0.003140095,-2.433048206,0.01553748,neg,ns,1.808619426,-0.0000407,0.000107988,-0.376979306,0.706446906,neg,ns,0.876717534,Gm9211,Gm9211_Intergenic_downstream,7,36329321,36329370,36329321,36329322,50,-,CGAAGCTGCTGTGTCTTTGCCCCTGGATTTTAATTGCTAAAGTAGCCAGT,Distal Intergenic,7,36234292,36235266,975,1,Gm9211-201,95078,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,12,15,668507,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7596,cg09349516,-0.00000834,0.00000369,-2.258875046,0.024585702,loss,ns,0.00000101,0.00000627,0.161502495,0.871802852,pos,ns,0.010598666,0.001836837,5.770061942,1.92E-08,pos,ns,7.716680869,-0.0000797,0.0000632,-1.261244376,0.208169108,neg,ns,0.934687508,Zbtb20,Zbtb20_Intron,16,43371482,43371531,43371482,43371483,50,-,CGAGTCATTAGATGTGTTATCCAGTGAATAACAGCATAATGATATTTTAG,"Intron (Zbtb20-209/Zbtb20, intron 7 of 7)",16,42875881,43463175,587295,1,Zbtb20-209,495601,Zbtb20-209;Zbtb20-211;Zbtb20-217;Zbtb20-218;Zbtb20-204;Zbtb20-215;Zbtb20-201;Zbtb20-203;Zbtb20-214;Zbtb20-213;Zbtb20-219;Zbtb20-216,Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,98,56490,ENSMUSG00000022708,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14291,cg00036788,0.0000357,0.00000372,9.600688202,2.81E-19,gain,yes,-0.00000102,0.00000632,-0.161481996,0.871818982,neg,ns,0.008676671,0.001851059,4.687410222,0.00000415,pos,ns,5.381908357,-0.0000639,0.0000637,-1.004554868,0.315894702,neg,ns,0.077450112,Gsx2,Gsx2_Intergenic_downstream,5,75084389,75084438,75084389,75084390,50,+,CGTTTAGTCACTGTTTCATTAGGCACTATTTGAACCTTGCAACATGTGGT,Distal Intergenic,5,75075602,75077625,2024,1,Gsx2-202,8787,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,10,14843,ENSMUSG00000035946,mapped to different genes,5,75084317,75084390,74,*,74,9,0.716216216,1.009090909,0.121621622,6.35E-08,CpGisland,TRUE,NA,NRS
4697,cg04448582,0.0000114,0.00000327,3.47623161,0.000581102,gain,ns,0.000000896,0.00000555,0.161417488,0.871869742,pos,ns,-0.001582484,0.001626534,-0.972918171,0.331352508,neg,ns,0.479709738,0.0000734,0.0000559,1.311550032,0.190642519,pos,ns,0.892443593,Sptbn1,Sptbn1_Exon,11,30138433,30138482,30138433,30138434,50,-,CGTGCAATCTGGTTCACCACTGCAACCCGGGAAGCCTGGTTGTTCATTTC,"Exon (Sptbn1-201/Sptbn1, exon 15 of 36)",11,30099395,30268169,168775,2,Sptbn1-201,129687,Sptbn1-201;Sptbn1-202;Sptbn1-203;Sptbn1-204,Sptbn1;Sptbn1;Sptbn1;Sptbn1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,20742,ENSMUSG00000020315,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8997,cg23859291,-0.000000707,0.00000034,-2.077003532,0.03862451,loss,ns,9.33E-08,0.000000578,0.161343803,0.871927725,pos,ns,0.000245474,0.000169423,1.448884063,0.148380722,pos,ns,0.828622519,-0.0000101,0.00000583,-1.726104711,0.08532494,neg,ns,0.008022949,Trim8,Trim8_Exon,19,46502768,46502817,46502768,46502769,50,+,CGCTGCGAGGCGCCCTGCTGCCAGTCCCACGTGCAGACGCACCTGCAGCA,"Exon (Trim8-201/Trim8, exon 1 of 6)",19,46501702,46516848,15147,1,Trim8-201,1066,Trim8-201,Trim8,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,15,21,93679,ENSMUSG00000025034,conserved gene and region,19,46502503,46503142,640,*,640,53,0.6359375,0.821705426,0.0828125,6.38E-36,CpGisland,TRUE,U1,Pr-A
15181,cg12322817,-0.0000365,0.0000119,-3.059653407,0.002409487,loss,ns,-0.00000327,0.0000203,-0.161340468,0.871930349,neg,ns,-0.010944491,0.005943034,-1.84156615,0.066493838,neg,ns,1.1772186,0.000212485,0.00020438,1.039655657,0.299310096,pos,ns,0.493460694,Polg,Polg_Intron,7,79518178,79518227,79518178,79518179,50,-,CGAATTTAGCAAATCAGATCATGGTTTAAATGCACTATTTAAAGCAGTCC,"Intron (Mir9-3hg-205/Mir9-3hg-205, intron 1 of 1)",7,79446231,79466362,20132,2,Polg-201,-51865,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,16,18975,ENSMUSG00000039176,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
26246,cg11241317,0.000000257,0.000006,0.042916764,0.965795515,gain,ns,-0.00000164,0.0000102,-0.161251968,0.87199999,neg,ns,-0.003191428,0.002984499,-1.069334822,0.285750748,neg,ns,0.544012623,0.0000962,0.000102637,0.937345519,0.349310535,pos,ns,0.926457873,Bud31,Bud31_Exon,5,145144928,145144977,145144976,145144977,50,+,AAAGTGGAATCTCTGTGGCCCATCTTCAGGATCCACCACCAGAAAACCCG,"Exon (Bud31-207/Bud31, exon 4 of 6)",5,145140362,145148078,7717,1,Bud31-207,4566,Bud31-207;Bud31-202;Bud31-206;Bud31-201;Bud31-203;Bud31-205;Bud31-204;Pdap1-201;Pdap1-204;Ptcd1-201,Bud31;Bud31;Bud31;Bud31;Bud31;Bud31;Bud31;Pdap1;Pdap1;Ptcd1,0;4532;0;0;0;0;0;-4690;-4930;22131,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,231889,ENSMUSG00000038722,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9359,cg20092403,-0.0000162,0.00000713,-2.272321208,0.023751714,loss,ns,0.00000195,0.0000121,0.161229797,0.872017437,pos,ns,-0.001878239,0.003547948,-0.52938747,0.596915574,neg,ns,0.22408709,-0.0000846,0.000122014,-0.693293902,0.488644231,neg,ns,0.909564618,Gm18962,Gm18962_Promoter,14,48393336,48393385,48393336,48393337,50,+,CGTCACATTGTAGTTGTTTGGAAATAATTATATCCATATCACAGACAGTA,Promoter (5-6kb),14,48387114,48388005,892,2,Gm18962-201,-5331,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,1,100418040,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18134,cg18998723,0.000118395,0.0000137,8.642595085,2.98E-16,gain,yes,0.00000375,0.0000233,0.161219729,0.87202536,pos,ns,-0.007084726,0.006818123,-1.039102177,0.299566993,neg,ns,0.52350604,0.000244637,0.000234475,1.043341138,0.297603256,pos,ns,0.607142576,Hlcs,Hlcs_Intron,16,94179616,94179665,94179616,94179617,50,-,CGAATTAATTTCAGAAAGGGAATATGAGATCAGCCTAGGATCATACAAAA,"Intron (Hlcs-209/Hlcs, intron 2 of 6)",16,94128882,94246085,117204,2,Hlcs-209,66420,Hlcs-209;Hlcs-202;Hlcs-201;Hlcs-205;Hlcs-206;Hlcs-207;Hlcs-208,Hlcs;Hlcs;Hlcs;Hlcs;Hlcs;Hlcs;Hlcs,0;0;0;0;0;-4616;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,3,110948,ENSMUSG00000040820,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21023,cg12885130,-0.0000439,0.00000791,-5.556207813,5.94E-08,loss,yes,0.00000216,0.0000134,0.161142449,0.872086172,pos,ns,-0.011600663,0.003935536,-2.947670542,0.0034449,neg,ns,2.462823336,0.000171603,0.000135343,1.267916446,0.205779249,pos,ns,0.86544594,Gm5987,Gm5987_Intergenic_upstream,5,106108933,106108982,106108981,106108982,50,-,GTGGTCTATTTAATCTCCTGTCGTGTGGGAAATTATGTTCAAAATCTCCG,Distal Intergenic,5,106215651,106216801,1151,1,Gm5987-201,-106718,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,4,546882,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26011,cg11252518,-0.0000512,0.0000113,-4.53534729,0.00000823,loss,ns,-0.00000309,0.0000192,-0.161118336,0.872105147,neg,ns,-0.014921416,0.0056214,-2.654395102,0.008355123,neg,ns,2.078047131,0.0000519,0.000193319,0.268707636,0.788333411,pos,ns,0.669356616,C2cd5,C2cd5_threeUTR,6,143050176,143050225,143050224,143050225,50,+,TTAGCATGTGATTTTATTTCTTGTCTGATTTCTGCCCACCATGCATCTCG,Promoter (<=1kb),6,143046844,143050188,3345,2,C2cd5-211,0,C2cd5-201;C2cd5-203;C2cd5-217;C2cd5-202;C2cd5-213;C2cd5-204;C2cd5-207;C2cd5-205;C2cd5-208;C2cd5-211,C2cd5;C2cd5;C2cd5;C2cd5;C2cd5;C2cd5;C2cd5;C2cd5;C2cd5;C2cd5,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,8,74741,ENSMUSG00000030279,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26772,cg09834085,0.00000948,0.00000467,2.030539137,0.043155076,gain,ns,0.00000128,0.00000793,0.161093872,0.872124399,pos,ns,-0.002989985,0.002323579,-1.286801444,0.199123565,neg,ns,0.700877341,0.0000251,0.0000799,0.314490198,0.753360312,pos,ns,0.819290636,Iqsec2,Iqsec2_Exon,X,152222249,152222298,152222297,152222298,50,-,GCTCTGACGCTGGGCTCCTTGCTTGTGGGTGCAGGGAAGCGGGGGCGGCG,"Exon (Iqsec2-207/Iqsec2, exon 14 of 15)",20,152144268,152225235,80968,1,Iqsec2-207,77981,Iqsec2-207;Iqsec2-202;Iqsec2-203;Iqsec2-201,Iqsec2;Iqsec2;Iqsec2;Iqsec2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,16,245666,ENSMUSG00000041115,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1430,cg02650321,-0.00000407,0.0000019,-2.141114059,0.033044399,loss,ns,0.00000052,0.00000323,0.160995319,0.872201954,pos,ns,0.000304133,0.000946462,0.321336207,0.748172163,pos,ns,0.125998455,-0.0000418,0.0000325,-1.284787503,0.19982572,neg,ns,0.959788159,Rpl36-ps3,Rpl36-ps3_Intergenic_upstream,12,12842457,12842506,12842457,12842458,50,-,CGCTCTGGCCTCTTGAAATTGCATCTGTTTTGAAATGTGACTCGACTTCA,Distal Intergenic,12,12912022,12912336,315,1,Rpl36-ps3-201,-69565,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,19,20,100043215,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23334,cg19409450,-0.00000617,0.00000292,-2.113612849,0.035346945,loss,ns,-0.000000798,0.00000496,-0.160906064,0.872272193,neg,ns,0.00056182,0.001453228,0.386601523,0.69931646,pos,ns,0.155326249,-0.0000354,0.00005,-0.708270564,0.479309467,neg,ns,0.899968504,Ipo13,Ipo13_Exon,4,117895571,117895620,117895619,117895620,50,-,AACACAGCTTTGACATCCAATCGTTCACACAGGAACAAATCTGGCTTCCG,"Exon (Ipo13-202/Ipo13, exon 3 of 7)",4,117894486,117900662,6177,2,Ipo13-202,5042,Dph2-201;Dph2-203;Dph2-204;Dph2-202;Ipo13-202;Ipo13-201;Ipo13-206;Ipo13-204;Ipo13-203,Dph2;Dph2;Dph2;Dph2;Ipo13;Ipo13;Ipo13;Ipo13;Ipo13,-3539;-3551;-3548;-3585;0;0;-457;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,230673,ENSMUSG00000033365,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11931,cg19424122,0.00000845,0.0000047,1.798379564,0.073089623,gain,ns,0.00000128,0.00000798,0.160887929,0.872286464,pos,ns,0.006784807,0.002337318,2.902817826,0.003963428,pos,ns,2.401929072,-0.000066,0.0000804,-0.821105903,0.412216939,neg,ns,0.14056735,Il17b,Il17b_threeUTR,18,61692252,61692301,61692252,61692253,50,+,CGGTGCCTGTGTCTGGGCTGTGTGAACCCCTTCACCATGCAGGAGGACCG,3' UTR,18,61684887,61692538,7652,1,Il17b-203,7365,Il17b-203;Il17b-202;Il17b-201;Pcyox1l-201,Il17b;Il17b;Il17b;Pcyox1l,0;0;0;15334,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,3,56069,ENSMUSG00000024578,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
8303,cg18585875,0.0000801,0.0000108,7.427813179,1.08E-12,gain,yes,-0.00000294,0.0000183,-0.160795597,0.872359126,neg,ns,0.021303384,0.005364355,3.971285033,0.0000889,pos,ns,4.050966087,-0.00033385,0.00018448,-1.809684255,0.071313155,neg,ns,0.523561943,Zeb2,Zeb2_Exon,2,44989091,44989140,44989091,44989092,50,-,CGATAAGGTGGTGCTTGTGTTTAAACGCTTTCTTACAAATCTGACACTGA,"Exon (Zeb2-212/Zeb2, exon 11 of 11)",2,44983632,45117395,133764,2,Zeb2-212,128255,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,21,158,24136,ENSMUSG00000026872,conserved gene but different region,2,44988892,44989117,226,*,226,18,0.592920354,0.906215193,0.079646018,2.95E-12,CpGisland,TRUE,U12,Tr-I
24080,cg02292529,0.0000105,0.00000284,3.712906688,0.000242888,gain,ns,0.000000774,0.00000482,0.16056923,0.872537273,pos,ns,0.006416223,0.001412443,4.542641271,0.00000797,pos,ns,5.098707874,-0.000132473,0.0000486,-2.727244945,0.006750379,neg,ns,0.0720336,Zic5,Zic5_Intergenic_downstream,14,122453792,122453841,122453792,122453793,50,+,CGTCTGCGAGTCTGAGCTGCAAAGTTACTGATTTGCAGGCTGCATGTTAA,Downstream (2-3kb),14,122459193,122460021,829,2,Zic5-202,6180,Zic5-201,Zic5,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,14,26,65100,ENSMUSG00000041703,mapped to different genes,14,122453676,122453930,255,*,255,17,0.564705882,0.840279124,0.066666667,2.37E-10,CpGisland,TRUE,U3,Pr-B
14034,cg21420992,0.000000781,0.00000679,0.114947358,0.908561264,gain,ns,-0.00000185,0.0000115,-0.160554176,0.872549121,neg,ns,0.004124761,0.003381775,1.219703173,0.223504557,pos,ns,0.650713618,-0.000185381,0.000116299,-1.594002221,0.111954558,neg,ns,0.830436306,AC119183.1,AC119183.1_Intergenic_downstream,15,74329233,74329282,74329281,74329282,50,+,AATTATAGATTAATTAATTCTCACCGAGCAATATTTGACCTACATCAGCG,Distal Intergenic,15,74400755,74440444,39690,2,AC119183.1-201,111162,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,,NA,mapped to different genes,15,74329281,74329484,204,*,204,11,0.485294118,0.920426579,0.053921569,0.00000558,CpGisland,TRUE,U15,NS
21937,cg27528346,0.00000313,0.00000258,1.214744654,0.225387947,gain,ns,-0.000000702,0.00000438,-0.160543537,0.872557494,neg,ns,0.000246588,0.001281786,0.192378643,0.847571582,pos,ns,0.071823613,-0.0000475,0.0000441,-1.077927492,0.281904172,neg,ns,0.96016578,Faf1,Faf1_Intron,4,109763279,109763328,109763279,109763280,50,-,CGCTATTTAAGCACCATGAATATAGGCGCAAGAGCAACAGTTGACTGAGT,"Intron (Faf1-201/Faf1, intron 7 of 18)",4,109676588,109963960,287373,1,Faf1-201,86691,Faf1-201,Faf1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,24,14084,ENSMUSG00000010517,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6045,cg24995571,-0.0000244,0.00000637,-3.835183612,0.000151999,loss,ns,-0.00000174,0.0000108,-0.160531632,0.872566863,neg,ns,-0.002693483,0.00317244,-0.849025409,0.396522305,neg,ns,0.401732378,-0.000192405,0.0001091,-1.763563337,0.078790578,neg,ns,0.870072507,Zfp507,Zfp507_Intergenic_upstream,7,35892547,35892596,35892595,35892596,50,-,TTCAAAATATTTCAAACATTGTTGACCTTTGTTATATAATCCCAGGCTCG,Distal Intergenic,7,35802017,35803003,987,2,Zfp507-205,-89593,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,4,668501,ENSMUSG00000044452,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25649,cg23992472,-0.0000012,0.00000072,-1.668696921,0.096187065,loss,ns,0.000000196,0.00000122,0.160192917,0.87283344,pos,ns,0.000523599,0.000358265,1.461484667,0.144895368,pos,ns,0.838945497,-0.0000223,0.0000123,-1.811948702,0.07096162,neg,ns,0.019730958,Eif4g3,Eif4g3_fiveUTR,4,137993477,137993526,137993477,137993478,50,-,CGGCCACAGCGCCATGTTGGATGCTCTGCTCGTTGAGTGAAGAAAATCCA,Promoter (<=1kb),4,137993484,138058035,64552,1,Eif4g3-207,0,Eif4g3-210;Eif4g3-201;Eif4g3-204;Eif4g3-203;Eif4g3-202;Eif4g3-205;Eif4g3-206;Eif4g3-207;Eif4g3-215,Eif4g3;Eif4g3;Eif4g3;Eif4g3;Eif4g3;Eif4g3;Eif4g3;Eif4g3;Eif4g3,0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,10,230861,ENSMUSG00000028760,conserved gene and region,4,137992842,137994345,1504,*,1504,165,0.691489362,0.925973604,0.109707447,7.33E-132,CpGisland,TRUE,U1,Pr-A
4770,cg00279054,0.00000528,0.00000144,3.665533879,0.000290297,gain,ns,-0.000000392,0.00000245,-0.160115938,0.872894026,neg,ns,-0.000628122,0.000717515,-0.875413438,0.382026757,neg,ns,0.417906218,0.0000258,0.0000247,1.044572173,0.297034592,pos,ns,0.043175406,Mecom,Mecom_fiveUTR,3,30509759,30509808,30509759,30509760,50,-,CGCCGCCAAAAAAAGTTTGGAGCGATTTATCACTTTGATTTGGAGATCTT,Promoter (<=1kb),3,29965456,30509822,544367,2,Mecom-207,14,Mecom-212;Mecom-213;Mecom-207;Mecom-208;Mecom-211;Mecom-209,Mecom;Mecom;Mecom;Mecom;Mecom;Mecom,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,13,80,14013,ENSMUSG00000027684,conserved gene and region,3,30509690,30509782,93,*,93,8,0.537634409,1.24,0.086021505,0.00000681,CpGisland,TRUE,U3,Pr-B
21271,cg15726426,-0.00000353,0.00000566,-0.623613034,0.533340323,loss,ns,0.00000154,0.00000962,0.160078414,0.87292356,pos,ns,0.001029327,0.002818898,0.365152147,0.715246838,pos,ns,0.145544053,0.00012666,0.0000969,1.306556225,0.192331955,pos,ns,0.095558416,Kcna3,Kcna3_Exon,3,107036825,107036874,107036873,107036874,50,+,GAGGAGATCCGCTTCTACCAGCTGGGCGAGGAGGCCATGGAGAAGTTCCG,Promoter (<=1kb),3,107036169,107038070,1902,1,Kcna3-201,656,Kcna3-201,Kcna3,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,3,16491,ENSMUSG00000047959,conserved gene and region,3,107035790,107036982,1193,*,1193,133,0.706621961,0.899841207,0.111483655,1.79E-107,CpGisland,TRUE,U3,Pr-B
19210,cg22376688,0.000057,0.00000485,11.74193013,1.38E-26,gain,yes,-0.00000132,0.00000824,-0.159903701,0.873061072,neg,ns,0.006915291,0.002414734,2.863790676,0.004471521,pos,ns,2.349544707,0.0000574,0.000083,0.691102739,0.490018165,pos,ns,0.121906275,Wnt1,Wnt1_Exon,15,98792821,98792870,98792821,98792822,50,-,CGCTGCAACTGCACCTTCCACTGGTGCTGCCACGTCAGCTGCCGCAACTG,"Exon (Wnt1-201/Wnt1, exon 4 of 4)",15,98789857,98793837,3981,1,Wnt1-201,2964,Wnt1-201,Wnt1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,12,22408,ENSMUSG00000022997,conserved gene and region,15,98792311,98793016,706,*,706,73,0.662889518,0.946832745,0.103399433,1.17E-56,CpGisland,TRUE,U13,Hc-P
4981,cg15700165,-0.00000241,0.00000229,-1.053377691,0.292988265,loss,ns,0.000000622,0.00000389,0.159878501,0.873080906,pos,ns,0.003662439,0.001140594,3.210993396,0.001461586,pos,ns,2.835175665,-0.000138373,0.0000392,-3.527687868,0.00048261,neg,ns,0.085978479,Prdm12,Prdm12_Intron,2,31641261,31641310,31641261,31641262,50,+,CGGGTATTTTCCCAGGTAGCTTAGAGGGGAACCTTGTAAGACATGGAGGC,"Intron (Prdm12-201/Prdm12, intron 1 of 4)",2,31640037,31655795,15759,1,Prdm12-201,1224,Prdm12-201,Prdm12,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,10,381359,ENSMUSG00000079466,conserved gene and region,2,31641159,31641262,104,*,104,12,0.586538462,1.386666667,0.115384615,3.14E-10,CpGisland,TRUE,U13,Hc-P
15176,cg19648853,0.00000363,0.000000629,5.768587006,1.94E-08,gain,yes,-0.000000171,0.00000107,-0.159786573,0.873153261,neg,ns,0.000629719,0.000313002,2.011868778,0.045098685,pos,ns,1.345836121,-0.0000138,0.0000108,-1.283949262,0.200118505,neg,ns,0.007781045,Polg,Polg_Intron,7,79508707,79508756,79508707,79508708,50,+,CGAGCGTTACTAATCCGAAGTTACAGCGCTAATTCCCTGATCCGGCCGCT,"Intron (Mir9-3hg-205/Mir9-3hg-205, intron 1 of 1)",7,79446231,79466362,20132,2,Polg-201,-42345,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,16,18975,ENSMUSG00000039176,mapped to different genes,7,79508346,79509151,806,*,806,76,0.643920596,0.91290611,0.094292804,1.10E-55,CpGisland,TRUE,U13,Hc-P
8286,cg05516423,-0.0000177,0.00000505,-3.502898632,0.000527924,loss,ns,-0.00000137,0.00000857,-0.159728549,0.873198932,neg,ns,-0.004824556,0.002512068,-1.920551487,0.055705434,neg,ns,1.25410244,0.0000855,0.0000864,0.990270979,0.322813988,pos,ns,0.916748594,Fat1,Fat1_Exon,8,44952676,44952725,44952676,44952677,50,-,CGAGTTTTTACAGGAGAGCTATTTTGTGGAAGTGAGTGAAGACAAGGAGG,"Exon (Fat1-205/Fat1, exon 2 of 27)",8,44935447,45052257,116811,1,Fat1-205,17229,Fat1-205;Fat1-203;Fat1-201;Fat1-206,Fat1;Fat1;Fat1;Fat1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,14107,ENSMUSG00000070047,conserved gene and region,8,44952517,44952677,161,*,161,11,0.546583851,0.915245478,0.068322981,0.000000568,CpGisland,TRUE,U10,Tr-S
13817,cg23684458,0.0000516,0.00000867,5.950569777,7.22E-09,gain,yes,-0.00000235,0.0000147,-0.159605175,0.873296042,neg,ns,-0.001636126,0.004313405,-0.379311999,0.70471588,neg,ns,0.151985942,0.000081,0.000148338,0.546344476,0.585222158,pos,ns,0.391188201,Six1,Six1_Intergenic_downstream,12,73035687,73035736,73035687,73035688,50,-,CGCAGGAGGGATCGCGTTACAACTTTCATTTCCTGAAATGTTTGAGGGAA,Distal Intergenic,12,73040015,73042815,2801,2,Six1-204,7128,Six1-204,Six1,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,18,20471,ENSMUSG00000051367,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
14368,cg19983424,0.00000636,0.00000147,4.325945355,0.0000205,gain,ns,-0.000000399,0.0000025,-0.159567586,0.873325629,neg,ns,0.001666971,0.00073218,2.276722093,0.023484162,pos,ns,1.629224934,0.00000223,0.0000252,0.088475164,0.929556151,pos,ns,0.042426592,Speg,Speg_fiveUTR,1,75382137,75382186,75382185,75382186,50,+,CCGCCATGAAGAAGCTGTGGGTGAAGAAGCGTTTCCAGGTGAGGGCTCCG,Promoter (<=1kb),1,75382138,75387895,5758,1,Speg-208,0,Speg-201;Speg-214;Speg-205;Speg-215;Speg-208;Speg-213;Speg-207;Speg-210;Speg-209;Speg-211,Speg;Speg;Speg;Speg;Speg;Speg;Speg;Speg;Speg;Speg,0;0;0;0;0;0;0;0;-3326;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,9,11790,ENSMUSG00000026207,conserved gene but different region,1,75381925,75382387,463,*,463,49,0.779697624,0.696775184,0.105831534,9.16E-39,CpGisland,TRUE,U3,Pr-B
598,cg11647274,-0.0000307,0.0000101,-3.058035276,0.002422148,loss,ns,0.00000273,0.0000171,0.159560912,0.873330881,pos,ns,-0.008399347,0.005004445,-1.678377304,0.094281195,neg,ns,1.025574921,0.0000481,0.000172102,0.279632363,0.779946057,pos,ns,0.848293739,Rbfox1,Rbfox1_Intron,16,7149410,7149459,7149458,7149459,50,+,CTGCCAACATTACCTGCATTATTTCGGTTGCCTTTTTCATTATAGGTTCG,"Intron (Rbfox1-205/Rbfox1, intron 4 of 11)",16,5885355,7353045,1467691,1,Rbfox1-205,1264055,Rbfox1-205;Rbfox1-201;Rbfox1-202;Rbfox1-203,Rbfox1;Rbfox1;Rbfox1;Rbfox1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,35,268859,ENSMUSG00000008658,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2527,cg05744273,-0.00000491,0.00000362,-1.357389382,0.17564488,loss,ns,0.00000098,0.00000614,0.159551287,0.873338458,pos,ns,-0.000813347,0.001799261,-0.452044762,0.651552869,neg,ns,0.186050339,-0.0000542,0.0000619,-0.875853744,0.38178769,neg,ns,0.93837956,Pkhd1,Pkhd1_Intron,1,20302939,20302988,20302987,20302988,50,+,CATGCTCATTATCTCTGCCCCATTTAATGATTTTTGATTGAAGGGTGGCG,"Intron (Pkhd1-201/Pkhd1, intron 50 of 66)",1,20057779,20618064,560286,2,Pkhd1-201,315076,Pkhd1-201,Pkhd1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,25,241035,ENSMUSG00000043760,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5265,cg05331950,0.0000359,0.00000529,6.79701945,5.49E-11,gain,yes,-0.00000143,0.00000898,-0.159522751,0.873360919,neg,ns,0.004445562,0.002630569,1.689962273,0.092040465,pos,ns,1.036021195,0.00000688,0.0000905,0.075999389,0.939468607,pos,ns,0.057172898,Tlx3,Tlx3_Promoter,11,33203722,33203771,33203770,33203771,50,+,GGAAATAGGAGCTTAGGGACTGTTCCAAGGTGACATCATTTTAACAAACG,Promoter (<=1kb),11,33200752,33203589,2838,2,Tlx3-201,-133,Tlx3-201,Tlx3,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,4,20,27140,ENSMUSG00000040610,conserved gene and region,11,33203770,33203989,220,*,220,24,0.568181818,1.355932203,0.109090909,1.47E-19,CpGisland,TRUE,NA,NRS
23328,cg11765450,-0.0000373,0.00000603,-6.17918906,2.02E-09,loss,yes,0.00000163,0.0000102,0.159491264,0.873385703,pos,ns,-0.006796457,0.003002109,-2.263893834,0.02427148,neg,ns,1.614903747,-0.000089,0.000103242,-0.862292478,0.389193143,neg,ns,0.861601045,Slc6a9,Slc6a9_fiveUTR,4,117855892,117855941,117855892,117855893,50,-,CGAGGCCACCAAGAGGGACCAGAACCTCAAACGGGGCAACTGGGGCAACC,5' UTR,4,117834506,117869296,34791,1,Slc6a9-202,21386,Slc6a9-202;Slc6a9-201;Slc6a9-207;Slc6a9-210;Slc6a9-206;Slc6a9-204;Slc6a9-211;Slc6a9-209;Slc6a9-203;Slc6a9-205,Slc6a9;Slc6a9;Slc6a9;Slc6a9;Slc6a9;Slc6a9;Slc6a9;Slc6a9;Slc6a9;Slc6a9,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,8,14664,ENSMUSG00000028542,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4203,cg12811630,-0.0000212,0.00000574,-3.687255486,0.000267569,loss,ns,-0.00000156,0.00000976,-0.159467709,0.873404245,neg,ns,-0.000487107,0.002858077,-0.170431663,0.86478185,neg,ns,0.063093434,-0.000145558,0.0000983,-1.480914746,0.139644937,neg,ns,0.905890748,Gm7729,Gm7729_Intergenic_upstream,18,27497710,27497759,27497758,27497759,50,-,CATCTTATTCCCTGTTTTCACCAGCCATCAATAATATTTCTGCCTGCCCG,Distal Intergenic,18,27598644,27599756,1113,1,Gm7729-201,-100934,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,22,665646,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27801,cg02470096,-0.0000342,0.00000951,-3.591891867,0.000381614,loss,ns,-0.00000258,0.0000162,-0.159451174,0.87341726,neg,ns,-0.004252758,0.00473327,-0.898481951,0.36962598,neg,ns,0.432237511,-0.000053,0.000162777,-0.325397109,0.745100055,neg,ns,0.815754048,Esrrg,Esrrg_Intergenic_upstream,1,187542512,187542561,187542512,187542513,50,+,CGAAGAAGTTCAAATTGTTTATTGATTTTCATTTCTGTGTTCAAAGGAAG,Distal Intergenic,1,187608791,188043502,434712,1,Esrrg-204,-66230,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,60,26381,ENSMUSG00000026610,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22540,cg10945667,-0.00000983,0.00000156,-6.281492665,1.13E-09,loss,yes,0.000000424,0.00000266,0.15941504,0.873445702,pos,ns,-0.0000511,0.000778726,-0.065597601,0.947740481,neg,ns,0.023310569,-0.00000251,0.0000268,-0.09362936,0.92546407,neg,ns,0.072690524,Gpc5,Gpc5_Intergenic_upstream,14,115040890,115040939,115040890,115040891,50,+,CGGAAGTACTTTGTTTTTTATGCTAATGAGGGAGTGGGGCTTGTCCGTAT,Distal Intergenic,14,115092215,115134210,41996,1,Gpc5-204,-51276,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,3,103978,ENSMUSG00000022112,mapped to different genes,14,115040330,115040891,562,*,562,83,0.768683274,1.025186813,0.147686833,4.06E-79,CpGisland,TRUE,NA,NRS
3528,cg14306812,-0.00000125,0.000000935,-1.340385515,0.181101543,loss,ns,0.000000253,0.00000159,0.15937163,0.873479873,pos,ns,0.000269187,0.000465461,0.578322414,0.563466351,pos,ns,0.249132014,-0.0000177,0.000016,-1.107235764,0.269050411,neg,ns,0.02484877,Lpp,Lpp_Promoter,16,24393341,24393390,24393341,24393342,50,+,CGCCTTCCCATACCTTACATGGACAAATGCGTGCAGGCAAAGTCAGGAAT,Promoter (<=1kb),16,24393507,24685183,291677,1,Lpp-205,-117,Lpp-205;Lpp-201;Lpp-204,Lpp;Lpp;Lpp,0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,7,210126,ENSMUSG00000033306,mapped to different genes,16,24393279,24393443,165,*,165,19,0.715151515,0.933035714,0.115151515,4.92E-16,CpGisland,TRUE,U1,Pr-A
1209,cg06644235,0.00000249,0.0000092,0.270854417,0.786683258,gain,ns,-0.00000249,0.0000156,-0.15922613,0.873594404,neg,ns,0.020170768,0.004577043,4.406943019,0.0000145,pos,ns,4.839693336,-0.000384279,0.000157404,-2.441349573,0.015191553,neg,ns,0.401962459,Bcor,Bcor_Intron,X,12062475,12062524,12062475,12062476,50,+,CGTGCAGGATTTTAATTGCTCTTTGGAGGTTGAGCCGTTTCTTTTGACTG,"Intron (Bcor-202/Bcor, intron 1 of 14)",20,12036740,12080553,43814,2,Bcor-202,18029,Bcor-202;Bcor-203;Bcor-204;Bcor-206;Bcor-201;Bcor-207;Bcor-205,Bcor;Bcor;Bcor;Bcor;Bcor;Bcor;Bcor,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,56,74,71458,ENSMUSG00000040363,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11166,cg00794775,-0.00000015,0.00000203,-0.073657796,0.941330186,loss,ns,0.00000055,0.00000346,0.159127328,0.873672178,pos,ns,0.001445454,0.00101283,1.427142834,0.154545187,pos,ns,0.810944515,-0.000026,0.0000348,-0.746027949,0.456215865,neg,ns,0.957141036,Marchf3,Marchf3_Exon,18,56811850,56811899,56811850,56811851,50,+,CGCACTACTGTTGACAGCAGCTGCCCGTCCTTGGCTGAAACTTGCATGAC,"Exon (Marchf3-202/Marchf3, exon 2 of 5)",18,56761716,56925548,163833,2,Marchf3-202,113649,Marchf3-202;Marchf3-201;Marchf3-203,Marchf3;Marchf3;Marchf3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,7,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6406,cg10197212,-0.00000254,0.00000177,-1.43172664,0.153229501,loss,ns,0.000000479,0.00000301,0.159069113,0.873718004,pos,ns,-0.001056063,0.000882297,-1.196947562,0.232241525,neg,ns,0.634060125,-0.00000939,0.0000303,-0.30947449,0.757168526,neg,ns,0.053530104,Pknox2,Pknox2_Exon,9,37147107,37147156,37147107,37147108,50,+,CGCAATGAATAATACTCTGGCTTGGGGACTGGAATAAAACACACGCGCTC,Promoter (<=1kb),9,36890982,37147407,256426,2,Pknox2-201,251,Pknox2-201;Pknox2-202;Pknox2-209;Pknox2-212;Pknox2-211;Pknox2-213;Pknox2-214,Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2,0;0;0;0;0;0;-1292,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,47,208076,ENSMUSG00000035934,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
18703,cg26747497,-0.000000974,0.00000279,-0.349079213,0.727266829,loss,ns,-0.000000754,0.00000474,-0.15903045,0.87374844,neg,ns,0.000858762,0.001388178,0.618624953,0.536617743,pos,ns,0.270334972,-0.0000277,0.0000477,-0.579560668,0.562631859,neg,ns,0.94310141,Dscam,Dscam_Exon,16,96772435,96772484,96772435,96772436,50,+,CGTCTGCGCCCACATCGTTGCTGACCTTGCAGAGGTAGTAGCCACTGTCT,"Exon (Gm32509-201/Gm32509-201, exon 5 of 5)",16,96590840,97170752,579913,2,Dscam-201,398268,Dscam-201,Dscam,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,12,13508,ENSMUSG00000050272,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15477,cg13890364,-0.00000962,0.00000439,-2.188413404,0.029385484,loss,ns,-0.00000119,0.00000746,-0.15893104,0.873826695,neg,ns,-0.002699668,0.002186802,-1.2345278,0.217941263,neg,ns,0.661660536,-0.0000484,0.0000752,-0.644190488,0.519928262,neg,ns,0.872001285,Gm7503,Gm7503_Intergenic_upstream,18,81013178,81013227,81013226,81013227,50,-,CACAGCAAAAAATCAATGTGGCAGGGCCCAACTGCTGTGGCCTGATAACG,Distal Intergenic,18,80997003,80997383,381,2,Gm7503-201,-15844,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,17,21,665124,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
830,cg03626038,-0.00000265,0.00000115,-2.3084343,0.021632759,loss,ns,0.00000031,0.00000195,0.158811415,0.873920865,pos,ns,0.000889096,0.000571959,1.554476877,0.121090996,pos,ns,0.916888147,-0.0000384,0.0000197,-1.952873169,0.051734214,neg,ns,0.973841585,1810013L24Rik,1810013L24Rik_Exon,16,8855906,8855955,8855906,8855907,50,+,CGATTTGAACACTTTCATATCAGAAGAAATGGCACTCCACTTGGACAATG,"Exon (1810013L24Rik-201/1810013L24Rik, exon 4 of 4)",16,8830100,8858922,28823,1,1810013L24Rik-201,25806,1810013L24Rik-201,1810013L24Rik,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,18,19,69053,ENSMUSG00000022507,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15390,cg00141625,-0.0000114,0.00000471,-2.423375325,0.015949331,loss,ns,-0.00000127,0.00000799,-0.158803127,0.873927389,neg,ns,-0.002969161,0.002342117,-1.267725653,0.20584731,neg,ns,0.686454804,-0.0000193,0.0000805,-0.239934504,0.810539607,neg,ns,0.850701705,Gria2,Gria2_threeUTR,3,80689186,80689235,80689234,80689235,50,+,ATGGGTTAATATTCTGTGCATTCTTTGCCACCTTCATTCGTTTCGCCTCG,3' UTR,3,80681450,80802835,121386,2,Gria2-201,113600,Gria2-201;Gria2-202;Gria2-203;Gria2-206,Gria2;Gria2;Gria2;Gria2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,12,19,14800,ENSMUSG00000033981,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13427,cg06272543,0.0000138,0.0000032,4.319674431,0.0000211,gain,ns,0.000000861,0.00000544,0.158368476,0.874269568,pos,ns,0.003227665,0.001593642,2.025338378,0.0436892,pos,ns,1.359625911,-0.0000555,0.0000548,-1.011940208,0.312355815,neg,ns,0.028942894,Sp5,Sp5_fiveUTR,2,70474942,70474991,70474990,70474991,50,-,ACCAACAAACACACCATAGGAGCTTTGTGGATTCAAAGGATTTGCTTTCG,Promoter (<=1kb),2,70474923,70477729,2807,1,Sp5-201,19,Sp5-201,Sp5,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,7,11,64406,ENSMUSG00000075304,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
6952,cg09374907,-0.0000209,0.00000577,-3.623371446,0.000339693,loss,ns,0.00000155,0.0000098,0.158173358,0.874423181,pos,ns,-0.005154809,0.002871154,-1.795378471,0.073567292,neg,ns,1.133315233,0.0000185,0.0000987,0.187265284,0.851575145,pos,ns,0.781805787,Map4k4,Map4k4_Exon,1,40011656,40011705,40011704,40011705,50,+,GTTGACCAAAAGCGTGCCAGCCATCATGAGAGCAATGGCTTTGCCGGTCG,"Exon (Map4k4-213/Map4k4, exon 22 of 31)",1,39900913,40026310,125398,1,Map4k4-201,110743,Map4k4-201;Map4k4-202;Map4k4-213;Map4k4-218;Map4k4-215;Map4k4-217;Map4k4-209;Map4k4-208;Map4k4-205;Map4k4-207;Map4k4-210,Map4k4;Map4k4;Map4k4;Map4k4;Map4k4;Map4k4;Map4k4;Map4k4;Map4k4;Map4k4;Map4k4,0;0;0;0;0;0;0;0;0;4263;-2147,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,12,26921,ENSMUSG00000026074,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13801,cg07601212,0.0000133,0.00000201,6.612121497,1.66E-10,gain,yes,0.00000054,0.00000342,0.158118574,0.874466313,pos,ns,0.002318503,0.00100116,2.315816954,0.021220531,pos,ns,1.673243747,0.0000133,0.0000344,0.386219613,0.699598969,pos,ns,0.046043059,4930447C04Rik,4930447C04Rik_Intergenic_downstream,12,72854560,72854609,72854560,72854561,50,+,CGTTTTGTCAGGAGAACAGCCCGCCATCCTGAGCAGATTTGCTGAATTAA,Distal Intergenic,12,72892924,72906271,13348,2,4930447C04Rik-205,51662,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,75801,ENSMUSG00000021098,mapped to different genes,12,72854505,72854677,173,*,173,11,0.560693642,0.816037736,0.063583815,0.00000115,CpGisland,TRUE,NA,NRS
10821,cg24864887,0.0000702,0.00000529,13.27664412,3.71E-32,gain,yes,0.00000142,0.00000898,0.158025249,0.874539789,pos,ns,0.009173309,0.002630725,3.486988822,0.000559074,pos,ns,3.252530496,-0.0000192,0.0000905,-0.211901779,0.832322913,neg,ns,0.124813957,Isl2,Isl2_Intergenic_downstream,9,55546826,55546875,55546826,55546827,50,-,CGTGCCCAGGTCACTTGGTGTGACATTTCAAACCCCTGCGACTTGTTTTC,Downstream (<1kb),9,55542336,55544280,1945,1,Isl2-204,4539,Isl2-205;Isl2-201;Isl2-203;Isl2-202;Isl2-204;Scaper-202;Scaper-201;Scaper-204;Scaper-205,Isl2;Isl2;Isl2;Isl2;Isl2;Scaper;Scaper;Scaper;Scaper,8154;5678;5619;5619;4490;0;0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,4,4,104360,ENSMUSG00000032318,conserved gene and region,9,55546070,55546898,829,*,829,68,0.58986731,0.951779564,0.082026538,1.34E-45,CpGisland,TRUE,NA,NRS
23036,cg03153971,-0.00000539,0.00000264,-2.040476757,0.042149882,loss,ns,0.000000708,0.00000448,0.157979118,0.874576109,pos,ns,-0.001431828,0.001313634,-1.089975369,0.276570524,neg,ns,0.558194107,0.000015,0.0000452,0.33154706,0.740455325,pos,ns,0.928743007,Frs2,Frs2_Exon,10,117077598,117077647,117077646,117077647,50,+,CTATTATTTTGCATAATCTCTTGCAACATGTTAAATAATTCTTCTGCACG,"Exon (Frs2-201/Frs2, exon 8 of 10)",10,117069427,117148510,79084,2,Frs2-201,70863,Frs2-201,Frs2,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,327826,ENSMUSG00000020170,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26536,cg17295628,0.0000128,0.00000597,2.15215743,0.032156763,gain,ns,-0.0000016,0.0000101,-0.157965143,0.874587111,neg,ns,-0.001430098,0.0029698,-0.481546798,0.630467678,neg,ns,0.200337173,0.000172349,0.000102131,1.687521539,0.092508935,pos,ns,0.737151894,Casz1,Casz1_Intron,4,148893534,148893583,148893582,148893583,50,+,TTGTCACCCTAATTGATTGCATTAACCTTTCAGCGTATTGGATTTCCCCG,"Intron (Casz1-201/Casz1, intron 3 of 15)",4,148804429,148945129,140701,1,Casz1-201,89105,Casz1-201;Casz1-202;Casz1-205,Casz1;Casz1;Casz1,0;0;4153,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,94,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
5865,cg18556021,0.00000757,0.00000489,1.547772896,0.122697228,gain,ns,-0.00000131,0.00000831,-0.157829849,0.874693633,neg,ns,-0.001249676,0.002435784,-0.513048646,0.608282701,neg,ns,0.215894534,0.0000393,0.0000838,0.469006285,0.639394805,pos,ns,0.89854692,Cnot4,Cnot4_Exon,6,35070245,35070294,35070293,35070294,50,+,TTGATGACAACTTTATGTATTTTACCAAACTTCCCAAAATATTCTGGTCG,"Exon (Cnot4-206/Cnot4, exon 4 of 11)",6,35022065,35133625,111561,2,Cnot4-206,63331,Cnot4-206;Cnot4-202;Cnot4-203;Cnot4-201;Cnot4-207;Cnot4-208,Cnot4;Cnot4;Cnot4;Cnot4;Cnot4;Cnot4,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,10,53621,ENSMUSG00000038784,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27368,cg18851565,-0.00000211,0.00000289,-0.729024644,0.466537,loss,ns,-0.000000774,0.00000491,-0.157634379,0.874847537,neg,ns,-0.000691466,0.001439285,-0.480423289,0.631265281,neg,ns,0.199788096,-0.0000526,0.0000495,-1.062281872,0.288934575,neg,ns,0.914289004,Zmynd8,Zmynd8_Exon,2,165807626,165807675,165807626,165807627,50,+,CGCTGCATCTTCTGCATGTGCCACTTTTGGGAGGACGTTTGAAACTTACT,"Exon (Zmynd8-205/Zmynd8, exon 14 of 22)",2,165784152,165858173,74022,2,Zmynd8-205,50498,Zmynd8-205;Zmynd8-221;Zmynd8-203;Zmynd8-220;Zmynd8-201;Zmynd8-206;Zmynd8-218;Zmynd8-202,Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,12,228880,ENSMUSG00000039671,conserved gene and region,2,165807626,165807917,292,*,292,27,0.640410959,0.921028037,0.092465753,6.59E-20,CpGisland,TRUE,U10,Tr-S
19750,cg20075843,0.0000133,0.00000416,3.188826548,0.001574509,gain,ns,-0.00000111,0.00000706,-0.15755772,0.874907896,neg,ns,0.003571777,0.002069083,1.726260809,0.085296823,pos,ns,1.069067144,-0.000220127,0.0000712,-3.093596111,0.002157548,neg,ns,0.896991501,Scn8a,Scn8a_Exon,15,101031710,101031759,101031758,101031759,50,-,GCAACCTTCAAAGGCTGGATGGACATCATGTATGCAGCTGTAGATTCCCG,"Exon (Scn8a-201/Scn8a, exon 23 of 27)",15,100870683,101045929,175247,1,Scn8a-201,161027,Scn8a-201;Scn8a-204;Scn8a-213;Scn8a-203;Scn8a-205;Scn8a-208;Scn8a-209,Scn8a;Scn8a;Scn8a;Scn8a;Scn8a;Scn8a;Scn8a,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,18,24,20273,ENSMUSG00000023033,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10885,cg08894682,0.00000289,0.00000139,2.07816864,0.038516333,gain,ns,-0.000000372,0.00000236,-0.15752594,0.874932919,neg,ns,0.001535461,0.000691604,2.220143895,0.027131988,pos,ns,1.566518389,-0.00000142,0.0000238,-0.059760281,0.952385066,neg,ns,0.958879604,Ralgapa1,Ralgapa1_Exon,12,55735134,55735183,55735134,55735135,50,-,CGATGGCAGAGCACATTCACCAATGGATCGGCTTCTCATGGCTTTAAAAA,"Exon (Ralgapa1-204/Ralgapa1, exon 17 of 42)",12,55602896,55820767,217872,2,Ralgapa1-211,85584,Ralgapa1-211;Ralgapa1-212;Ralgapa1-201;Ralgapa1-202;Ralgapa1-204;Ralgapa1-207;Ralgapa1-208,Ralgapa1;Ralgapa1;Ralgapa1;Ralgapa1;Ralgapa1;Ralgapa1;Ralgapa1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,15,56784,ENSMUSG00000021027,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13399,cg06997801,0.0000759,0.00000917,8.277859397,3.78E-15,gain,yes,-0.00000245,0.0000156,-0.157520655,0.87493708,neg,ns,0.009399374,0.004565395,2.058830515,0.040345684,pos,ns,1.394202915,-0.000210326,0.000157004,-1.339625922,0.18134822,neg,ns,0.106231246,Nr2f2,Nr2f2_Intron,7,70360923,70360972,70360923,70360924,50,-,CGGGGGCCAAGTCCAGGGCAGCCCACAGTCAGCCATTCAGGAAAGCCATC,"Intron (Nr2f2-202/Nr2f2, intron 1 of 2)",7,70354439,70366735,12297,2,Nr2f2-202,5763,Nr2f2-201;Nr2f2-202;Nr2f2-205;Nr2f2-204;Nr2f2-206,Nr2f2;Nr2f2;Nr2f2;Nr2f2;Nr2f2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,69,11819,ENSMUSG00000030551,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
9346,cg23687194,0.0000542,0.00000502,10.80019478,2.72E-23,gain,yes,-0.00000134,0.00000852,-0.157491723,0.87495986,neg,ns,0.007161048,0.002496384,2.868568511,0.004406282,pos,ns,2.355927726,0.000084,0.0000859,0.978057634,0.328808454,pos,ns,0.114791124,Id4,Id4_Intron,13,48262886,48262935,48262886,48262887,50,+,CGGTGGCGCCAGTTAGTCTGCAGCGAGAAGGTTCACACACCCCCTCTATT,"Intron (Id4-201/Id4, intron 2 of 2)",13,48261228,48266026,4799,1,Id4-201,1658,Id4-201,Id4,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,9,15904,ENSMUSG00000021379,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
22386,cg21277199,-0.0000362,0.00000532,-6.802978761,5.29E-11,loss,yes,-0.00000142,0.00000904,-0.157488567,0.874962345,neg,ns,-0.004329622,0.002648901,-1.634497253,0.103169521,neg,ns,0.986448585,0.0001089,0.0000911,1.195448899,0.232825367,pos,ns,0.870515145,Sdk2,Sdk2_Intron,11,113886634,113886683,113886634,113886635,50,+,CGATGGGCCTGAGACAGCTGTTAAACATCCTTAATGTTAGTTTAACAAGG,"Intron (Sdk2-201/Sdk2, intron 4 of 44)",11,113776374,114066218,289845,2,Sdk2-201,179535,Sdk2-201;Sdk2-203;Sdk2-205,Sdk2;Sdk2;Sdk2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,11,237979,ENSMUSG00000041592,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17387,cg00379717,-0.0000064,0.00000316,-2.022192468,0.044015003,loss,ns,-0.000000847,0.00000538,-0.157455139,0.874988667,neg,ns,-0.001539173,0.001575128,-0.977173132,0.329245377,neg,ns,0.482480314,0.0000342,0.0000542,0.631794612,0.527986722,pos,ns,0.886467894,Ubap2l,Ubap2l_Exon,3,90009104,90009153,90009152,90009153,50,-,ACTCACAGGGAACACAGCAGGCCCATACTGGAAGGTGCTGGGGAGGCCCG,"Exon (Ubap2l-215/Ubap2l, exon 23 of 27)",3,90000140,90052455,52316,2,Ubap2l-215,43302,Ubap2l-215;Ubap2l-201;Ubap2l-202;Ubap2l-208;Ubap2l-203;Ubap2l-211;Ubap2l-204;Ubap2l-220,Ubap2l;Ubap2l;Ubap2l;Ubap2l;Ubap2l;Ubap2l;Ubap2l;Ubap2l,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,15,74383,ENSMUSG00000042520,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17224,cg03231024,0.0000151,0.00000396,3.813872768,0.000165083,gain,ns,-0.00000106,0.00000673,-0.157448666,0.874993763,neg,ns,0.004727917,0.001972152,2.397339475,0.017106179,pos,ns,1.766846994,-0.00010799,0.0000678,-1.592258439,0.112345778,neg,ns,0.055115267,Efna1,Efna1_fiveUTR,3,89279494,89279543,89279494,89279495,50,-,CGGCCAGACTGCAGCACAGACCCAAGAGAGGGGCCCAGAGGAACTCCATA,Promoter (<=1kb),3,89271733,89279645,7913,2,Efna1-201,102,Efna1-201;Efna1-202;Efna1-203,Efna1;Efna1;Efna1,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,3,13636,ENSMUSG00000027954,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
9045,cg11875079,0.00000374,0.00000701,0.533680054,0.593945356,gain,ns,-0.00000187,0.0000119,-0.157401761,0.875030696,neg,ns,-0.003683697,0.003488635,-1.055913776,0.291829807,neg,ns,0.534870352,-0.000181463,0.000119974,-1.512519886,0.131420419,neg,ns,0.690880043,Nova1,Nova1_threeUTR,12,46698473,46698522,46698473,46698474,50,+,CGTAATCAATGGGTTGAAGTTGAGATGGAAGTAATTCTCTTTTGTAATTC,3' UTR,12,46694517,46818929,124413,2,Nova1-201,120407,Nova1-201;Nova1-204,Nova1;Nova1,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,10,24,664883,ENSMUSG00000021047,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9050,cg03121178,-0.0000422,0.00000658,-6.41168386,5.36E-10,loss,yes,-0.00000176,0.0000112,-0.157355922,0.87506679,neg,ns,-0.00454302,0.003274106,-1.38756065,0.166267474,neg,ns,0.7791927,-0.000111184,0.000112596,-0.987454885,0.324189771,neg,ns,0.815592524,Nova1,Nova1_Exon,12,46700055,46700104,46700103,46700104,50,+,CAGCTGGTGTTCCAGTAATGGTTACCTTCCGATTCCTTGTGCCAGGTACG,"Exon (Nova1-201/Nova1, exon 5 of 5)",12,46694517,46818929,124413,2,Nova1-201,118825,Nova1-201;Nova1-204,Nova1;Nova1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,24,664883,ENSMUSG00000021047,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21520,cg09572558,0.0000898,0.0000124,7.23683083,3.63E-12,gain,yes,-0.00000332,0.0000211,-0.15731051,0.875102547,neg,ns,0.022459763,0.006177219,3.635901866,0.000324243,pos,ns,3.489129336,-0.000547011,0.000212434,-2.57496745,0.010488474,neg,ns,0.51883956,Zfhx3,Zfhx3_Intron,8,108098789,108098838,108098789,108098790,50,-,CGGTGAGGCATCTCTGTACCTATTATGGCAAAAATCGATAATGCTTTCTG,"Intron (Zfhx3-204/Zfhx3, intron 1 of 15)",8,107942644,108961630,1018987,1,Zfhx3-204,156145,Zfhx3-204;Zfhx3-207,Zfhx3;Zfhx3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,114,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5980,cg00563045,-0.00000248,0.00000402,-0.616329976,0.53812907,loss,ns,-0.00000107,0.00000682,-0.157229866,0.875166047,neg,ns,-0.006108511,0.001998733,-3.05619138,0.002436649,neg,ns,2.613206969,0.000151354,0.0000687,2.201953782,0.028404782,pos,ns,0.877777694,Gtf2h4,Gtf2h4_Exon,17,35670909,35670958,35670909,35670910,50,-,CGGGCATGCTTGTCTGGTCCCAGCTGACTTGTGTCATCAGACCAGGCCTT,"Exon (Gtf2h4-201/Gtf2h4, exon 5 of 14)",17,35667730,35673739,6010,2,Gtf2h4-201,2781,Gtf2h4-201;Gtf2h4-212;Gtf2h4-205;Gtf2h4-207;Gtf2h4-208;Gtf2h4-211;Gtf2h4-204;Gtf2h4-209;Gtf2h4-202;Gtf2h4-210;Gtf2h4-206;Gtf2h4-203;Vars2-201;Vars2-206;Vars2-204;Vars2-211;Vars2-205,Gtf2h4;Gtf2h4;Gtf2h4;Gtf2h4;Gtf2h4;Gtf2h4;Gtf2h4;Gtf2h4;Gtf2h4;Gtf2h4;Gtf2h4;Gtf2h4;Vars2;Vars2;Vars2;Vars2;Vars2,0;0;0;0;0;0;0;0;0;0;0;0;-3317;-4646;-4176;-3369;-3360,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,14885,ENSMUSG00000001524,conserved gene and region,17,35670753,35670910,158,*,158,10,0.658227848,0.586270872,0.063291139,0.00000442,CpGisland,TRUE,U11,Tr-P
9524,cg15069444,0.0000107,0.00000817,1.304979091,0.192867801,gain,ns,0.00000218,0.0000139,0.157070147,0.875291814,pos,ns,0.005321511,0.004066329,1.308677067,0.191613115,pos,ns,0.717574769,-0.000172662,0.000139841,-1.234701568,0.217876651,neg,ns,0.758033923,Wnk2,Wnk2_Intron,13,49130018,49130067,49130018,49130019,50,-,CGGGCGCCAGCTTCCACAGCAGCAACTGTTGCTATGGAGACCAGGCTCCA,"Intron (Wnk2-211/Wnk2, intron 2 of 27)",13,49036303,49148012,111710,2,Wnk2-211,17945,Wnk2-211;Wnk2-201;Wnk2-202;Wnk2-205;Wnk2-210;Wnk2-207;Wnk2-204;Wnk2-203,Wnk2;Wnk2;Wnk2;Wnk2;Wnk2;Wnk2;Wnk2;Wnk2,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,2,75607,ENSMUSG00000037989,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27088,cg07792031,0.0000804,0.00000743,10.82944546,2.16E-23,gain,yes,0.00000198,0.0000126,0.156881817,0.875440114,pos,ns,0.011792942,0.003696559,3.190248614,0.001567029,pos,ns,2.804922866,-0.000245317,0.000127124,-1.92974199,0.054551087,neg,ns,0.233790632,Vstm2l,Vstm2l_Intron,2,157941432,157941481,157941432,157941433,50,-,CGCCTTGTAGGGTTGACAAATGAAGGATAATTAATATCCGTGAGGGAAGC,"Intron (Vstm2l-201/Vstm2l, intron 3 of 3)",2,157914653,157944719,30067,1,Vstm2l-201,26779,Vstm2l-201,Vstm2l,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,5,277432,ENSMUSG00000037843,conserved gene and region,2,157941357,157941597,241,*,241,17,0.576763486,0.864345992,0.070539419,9.64E-11,CpGisland,TRUE,U13,Hc-P
22747,cg06757051,0.0000036,0.00000205,1.753010172,0.080588707,gain,ns,-0.000000547,0.00000349,-0.156784598,0.875516671,neg,ns,0.00128042,0.001022169,1.25264994,0.211277251,pos,ns,0.675147262,-0.00011585,0.0000352,-3.295668653,0.001095762,neg,ns,0.943266317,Sox6,Sox6_Intron,7,115904884,115904933,115904884,115904885,50,+,CGTTCACACTGGAATAATTAGAACATGTCAGGAAGAATTAATTTCCTCAT,"Intron (Sox6-210/Sox6, intron 2 of 15)",7,115470872,116031047,560176,2,Sox6-210,126114,Sox6-210;Sox6-201;Sox6-202;Sox6-204;Sox6-206;Sox6-209;Sox6-214;Sox6-208,Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,37,57,20679,ENSMUSG00000051910,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10061,cg24580589,0.00000122,0.000000389,3.138690966,0.001860314,gain,ns,0.000000104,0.00000066,0.156782243,0.875518525,pos,ns,0.000267948,0.000193456,1.385059708,0.167030105,pos,ns,0.777205247,-0.0000125,0.00000665,-1.875468056,0.061668131,neg,ns,0.005753166,Maml3,Maml3_fiveUTR,3,52104794,52104843,52104842,52104843,50,-,CCGAGGCGACTGCAAAAGTAGATCGGTGAAGTCCTTTGCAAAACGCCGCG,Promoter (<=1kb),3,51685907,52105076,419170,2,Maml3-202,233,Maml3-202,Maml3,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,14,32,433586,ENSMUSG00000061143,conserved gene and region,3,52104757,52105132,376,*,376,44,0.686170213,1.011741683,0.117021277,5.57E-37,CpGisland,TRUE,U1,Pr-A
8176,cg17040904,-0.00000168,0.00000157,-1.072844764,0.28417521,loss,ns,0.000000418,0.00000267,0.15670044,0.875582943,pos,ns,-0.000241716,0.000781235,-0.309402033,0.757223583,neg,ns,0.120775869,0.0000262,0.0000269,0.973574566,0.331026879,pos,ns,0.957757284,Kmt2a,Kmt2a_threeUTR,9,44829203,44829252,44829203,44829204,50,+,CGCTCCTGCCACTGAGCATAATTATGGTCAAGTGAAGGTGGAAGCACTGC,3' UTR,9,44803355,44881296,77942,2,Kmt2a-201,52044,Kmt2a-201;Kmt2a-202;Kmt2a-205,Kmt2a;Kmt2a;Kmt2a,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,10,214162,ENSMUSG00000002028,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6543,cg27306452,-0.00001,0.0000101,-0.99609584,0.319980452,loss,ns,-0.00000268,0.0000171,-0.156635716,0.875633913,neg,ns,-0.00506074,0.005009747,-1.010178874,0.313197413,neg,ns,0.504181833,-0.000246756,0.000172285,-1.432257071,0.153077806,neg,ns,0.584711951,Zfp536,Zfp536_Intron,7,37651183,37651232,37651231,37651232,50,+,TCCACAGGGCACAGACCACCCCGCATATGATAATGTATTAATGCCCCACG,"Intron (Zfp536-202/Zfp536, intron 3 of 6)",7,37479104,37769624,290521,2,Zfp536-202,118392,Zfp536-202;Zfp536-201;Zfp536-203;Zfp536-206;Zfp536-209;Zfp536-208,Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,73,112,243937,ENSMUSG00000043456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21557,cg14023941,-0.000000849,0.00000132,-0.643445708,0.520410631,loss,ns,0.000000351,0.00000224,0.156595929,0.875665244,pos,ns,0.000283409,0.000656343,0.431799833,0.666187065,pos,ns,0.176403804,-0.0000357,0.0000226,-1.580923573,0.114915242,neg,ns,0.968786964,Zfhx3,Zfhx3_Intron,8,108281792,108281841,108281792,108281793,50,-,CGGTAACCATGGCAATAGGGTCAGCAGATATGATACTTAATTTAATCTTC,"Intron (Zfhx3-204/Zfhx3, intron 2 of 15)",8,107942644,108961630,1018987,1,Zfhx3-204,339148,Zfhx3-204;Zfhx3-207,Zfhx3;Zfhx3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,114,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16192,cg01848338,0.0000501,0.0000125,4.011314874,0.0000757,gain,ns,0.00000332,0.0000212,0.156528072,0.875718682,pos,ns,0.01685518,0.006212675,2.713031112,0.007039694,pos,ns,2.152446235,-0.000554426,0.000213653,-2.594977561,0.009909486,neg,ns,0.509047259,Gm26913,Gm26913_Intergenic_downstream,13,84571537,84571586,84571537,84571538,50,-,CGGGCTGGAAAATTACCACATGCTGTCACAGTTAGCTCAGCCAGGTCTTG,Distal Intergenic,13,84690210,84690941,732,2,Gm26913-201,119404,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,9,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8590,cg08225840,0.00000567,0.00000557,1.018268888,0.309344218,gain,ns,0.00000148,0.00000946,0.156515083,0.875728911,pos,ns,-0.004793851,0.002771178,-1.729896194,0.084644136,neg,ns,1.072403126,0.000240772,0.0000953,2.526446698,0.012019817,pos,ns,0.816645541,Gm13475,Gm13475_Intergenic_downstream,2,45409088,45409137,45409136,45409137,50,+,TCCTTTTAATGTGCCTCCAGGTTTCTGTGCTTTCTCTCACACCACCAACG,Distal Intergenic,2,45329232,45329465,234,1,Gm13475-201,79856,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,21,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3888,cg02211077,-0.00000484,0.00000353,-1.37138843,0.171245735,loss,ns,0.000000938,0.00000599,0.156487401,0.875750711,pos,ns,0.001254033,0.001755986,0.714147599,0.475673279,pos,ns,0.322691244,0.0000339,0.0000604,0.561265109,0.575022316,pos,ns,0.959712139,Nsd3,Nsd3_Exon,8,25691084,25691133,25691132,25691133,50,+,ATGAATCAAATCGTGCTGAGTTGATGAAATTACCTATGATTCCTTCTTCG,"Exon (Nsd3-206/Nsd3, exon 15 of 24)",8,25602284,25714970,112687,1,Nsd3-204,88800,Nsd3-204;Nsd3-206;Nsd3-201;Nsd3-210,Nsd3;Nsd3;Nsd3;Nsd3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,14,234135,ENSMUSG00000054823,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1668,cg17737088,-0.00000467,0.00000175,-2.672820144,0.007919743,loss,ns,0.000000464,0.00000297,0.156413649,0.875808792,pos,ns,-0.000130716,0.000869308,-0.150367376,0.880572569,neg,ns,0.055234848,-0.0000125,0.0000299,-0.418727093,0.67570555,neg,ns,0.028658806,Marf1,Marf1_Exon,16,14159604,14159653,14159604,14159605,50,+,CGGGGCCTCGCGGCCCTGCAGCCTCGTCAGGCTCAGTCCCCTCCCGATAA,"Exon (Mir484-201/Mir484-201, exon 1 of 1)",16,14140967,14163351,22385,2,Marf1-202,3698,Marf1-201;Marf1-202;Nde1-201;Nde1-203;Nde1-205;Nde1-206;Nde1-202;Nde1-204,Marf1;Marf1;Nde1;Nde1;Nde1;Nde1;Nde1;Nde1,0;0;-3622;-3634;-3645;-3651;-3692;-3696,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,223989,ENSMUSG00000060657,mapped to different genes,16,14159528,14159690,163,*,163,16,0.680981595,0.850065189,0.098159509,2.18E-12,CpGisland,TRUE,U1,Pr-A
17263,cg10499452,-0.0000041,0.000000944,-4.347769939,0.0000187,loss,ns,0.000000251,0.0000016,0.156349833,0.875859048,pos,ns,0.000317057,0.000469832,0.674831363,0.500285888,pos,ns,0.300781747,-0.000017,0.0000162,-1.049827286,0.294615258,neg,ns,0.027903371,Tmem135,Tmem135_Exon,7,89338535,89338584,89338583,89338584,50,-,AGTGTGGCCGATCTCATAGCAGTTATGAGGGATGGACTTGCTGAGGGCCG,Promoter (<=1kb),7,89139714,89338787,199074,2,Tmem135-201,203,Tmem135-201;Tmem135-202;Tmem135-203;Tmem135-207;Tmem135-205,Tmem135;Tmem135;Tmem135;Tmem135;Tmem135,0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,3,72759,ENSMUSG00000039428,conserved gene but different region,7,89338543,89338936,394,*,394,50,0.700507614,1.101296959,0.126903553,5.91E-44,CpGisland,TRUE,U1,Pr-A
12022,cg16309161,-0.0000173,0.00000832,-2.084389684,0.0379431,loss,ns,0.00000221,0.0000141,0.156347278,0.87586106,pos,ns,0.001251584,0.004139501,0.302351311,0.762587027,pos,ns,0.117710587,-0.000329919,0.000142357,-2.317547227,0.021124918,neg,ns,0.842791376,CT010569.1,CT010569.1_Intergenic_downstream,16,62371622,62371671,62371622,62371623,50,+,CGAAACATGGTAAAGGAAGCATAAATCCCCAAGATACCATTGCTAACAAT,Distal Intergenic,16,62483808,62483949,142,2,CT010569.1-201,112278,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19685,cg17913249,-0.00000135,0.00000128,-1.054849224,0.292315706,loss,ns,0.00000034,0.00000217,0.156335354,0.875870451,pos,ns,0.00031542,0.000636427,0.495610143,0.620520646,pos,ns,0.207243764,0.0000131,0.0000219,0.599559295,0.54923793,pos,ns,0.960959182,Rab6a,Rab6a_Exon,7,100629708,100629757,100629708,100629709,50,+,CGTAGCCTCATTCCCAGTTACATCCGTGATTCTGCTGCAGCTGTAGTAGT,"Exon (Rab6a-203/Rab6a, exon 4 of 8)",7,100607410,100641268,33859,1,Rab6a-203,22298,Gm14382-201;Rab6a-203;Rab6a-201;Rab6a-202;Rab6a-204,Gm14382;Rab6a;Rab6a;Rab6a;Rab6a,5190;0;0;0;-4591,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,19346,ENSMUSG00000030704,conserved gene and region,7,100629656,100629905,250,*,250,12,0.488,0.809716599,0.048,0.0000058,CpGisland,TRUE,NA,NRS
16348,cg07479793,0.00000644,0.0000039,1.650475345,0.099858485,gain,ns,0.00000103,0.00000662,0.156126382,0.876035024,pos,ns,0.004437713,0.001940705,2.286650518,0.022890198,pos,ns,1.640350452,-0.000108436,0.0000667,-1.624734596,0.105235366,neg,ns,0.910780888,Mrm1,Mrm1_Intron,11,84766109,84766158,84766109,84766110,50,-,CGGTGGCAAGGAGTTAAATGTATTAAGCAATTTACAATTAATATAGAAGT,"Intron (Gm11431-201/Gm11431-201, intron 2 of 2)",11,84814743,84815390,648,2,Mrm1-203,49281,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,42,217038,ENSMUSG00000018405,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7957,cg16391501,0.0000475,0.0000041,11.59732751,4.50E-26,gain,yes,-0.00000109,0.00000696,-0.156107266,0.876050079,neg,ns,0.009988947,0.002038459,4.900245144,0.00000155,pos,ns,5.810984189,-0.000131655,0.0000701,-1.878039189,0.061314348,neg,ns,0.074802489,Pax2,Pax2_Intergenic_upstream,19,44670382,44670431,44670430,44670431,50,-,GAGTGCTTAATGGTGCATAAGATTAAGCCGAGGCTCTCAGCTGCGCAGCG,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-85663,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,19,44670410,44670516,107,*,107,13,0.672897196,1.074131274,0.121495327,2.26E-11,CpGisland,TRUE,U13,Hc-P
20971,cg08561252,0.00000106,0.00000179,0.594093823,0.552882648,gain,ns,-0.000000475,0.00000304,-0.155942979,0.876179466,neg,ns,0.000527016,0.000891585,0.591100556,0.554883784,pos,ns,0.255797967,-0.0000392,0.0000307,-1.278642169,0.201979504,neg,ns,0.954320055,Zfp326,Zfp326_Exon,5,105888693,105888742,105888741,105888742,50,+,TACAGCAGTTTTTCTTCACCCCATATGAAGCCTGCACCTGTAGGCTCTCG,"Exon (Zfp326-209/Zfp326, exon 5 of 12)",5,105876565,105914780,38216,1,Zfp326-209,12128,Zfp326-209;Zfp326-208;Zfp326-201;Zfp326-205;Zfp326-206;Zfp326-202;Zfp326-203;Zfp326-204,Zfp326;Zfp326;Zfp326;Zfp326;Zfp326;Zfp326;Zfp326;Zfp326,0;0;0;0;0;11752;0;-2202,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,11,54367,ENSMUSG00000029290,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24459,cg03728138,-0.0000144,0.00000706,-2.035267728,0.042674266,loss,ns,-0.00000187,0.000012,-0.155888207,0.876222603,neg,ns,-0.00548743,0.003515399,-1.560969485,0.11955121,neg,ns,0.922446023,-0.000162612,0.000120894,-1.345079097,0.179582857,neg,ns,0.810617414,Ago1,Ago1_threeUTR,4,126438785,126438834,126438785,126438786,50,-,CGGAAGGAAGACAGGGTCGTGTCACTTCAAAGCTAAGTGCCATAGTGCCT,3' UTR,4,126435012,126468421,33410,2,Ago1-207,29587,Ago1-207;Ago1-201;Ago1-206;Ago1-202;Ago1-205;Ago1-204,Ago1;Ago1;Ago1;Ago1;Ago1;Ago1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,11,13,236511,ENSMUSG00000041530,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14240,cg15925255,0.0000216,0.00000392,5.520167262,7.17E-08,gain,yes,-0.00000104,0.00000665,-0.155886195,0.876224188,neg,ns,0.006465535,0.001948885,3.317556019,0.00101614,pos,ns,2.993046264,0.000274438,0.000067,4.094746722,0.000054,pos,ns,0.04077685,Onecut1,Onecut1_Intron,9,74868863,74868912,74868863,74868864,50,+,CGTTCAATTCAGTCCCTTTGATCCGCGCTGGGGAAAATCTATAGTCATCT,"Intron (Gm20649-201/Gm20649-201, intron 2 of 2)",9,74861921,74891781,29861,1,Onecut1-201,6942,Onecut1-201;Onecut1-202,Onecut1;Onecut1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,28,15379,ENSMUSG00000043013,conserved gene and region,9,74868659,74869003,345,*,345,19,0.457971015,1.056406124,0.055072464,4.57E-10,CpGisland,TRUE,NA,NRS
25589,cg15700171,-0.0000255,0.0000104,-2.445538652,0.01501959,loss,ns,0.00000276,0.0000177,0.155780887,0.876307127,pos,ns,0.00653243,0.005198188,1.256674377,0.209817657,pos,ns,0.678157966,-0.000660299,0.000178765,-3.693667363,0.000261187,neg,ns,0.363803713,Ache,Ache_Exon,5,137294137,137294186,137294137,137294138,50,+,CGCCAGTGGAAGGCCGAGTTCCACCGCTGGAGCTCCTACATGGTGCACTG,"Exon (Ache-201/Ache, exon 5 of 5)",5,137288277,137294466,6190,1,Ache-201,5860,Ache-204;Ache-206;Ache-207;Ache-201;Ache-209;Ache-202;Ache-208;Ache-203;Ache-205;Srrt-201;Srrt-212;Srrt-209;Srrt-211;Srrt-202;Srrt-216;Srrt-205;Srrt-206;Srrt-208;Srrt-217;Srrt-207;Srrt-213;Srrt-215;Srrt-204;Ufsp1-201;Ufsp1-202,Ache;Ache;Ache;Ache;Ache;Ache;Ache;Ache;Ache;Srrt;Srrt;Srrt;Srrt;Srrt;Srrt;Srrt;Srrt;Srrt;Srrt;Srrt;Srrt;Srrt;Srrt;Ufsp1;Ufsp1,6618;6371;6371;0;0;0;5852;5049;4890;0;0;0;0;5459;3239;2748;3031;2667;3381;4361;5823;6132;5700;-443;-856,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,11423,ENSMUSG00000023328,conserved gene but different region,5,137293983,137294222,240,*,240,20,0.625,0.868778281,0.083333333,5.92E-14,CpGisland,TRUE,NA,NRS
20307,cg07351749,0.0000759,0.00000809,9.379126136,1.46E-18,gain,yes,-0.00000214,0.0000137,-0.155734238,0.876343868,neg,ns,0.007764461,0.004025827,1.928662454,0.054685631,pos,ns,1.262126772,-0.000343169,0.000138448,-2.478685353,0.013718575,neg,ns,0.17553145,Hoxc5,Hoxc5_threeUTR,15,102992942,102992991,102992942,102992943,50,-,CGACTGTCATTTGCTTTTATAGAGAATAGAATGACACTCACAACTCTAAC,3' UTR,15,102967443,103015676,48234,1,Hoxc5-202,25499,Hoxc5-202;Hoxc8-201;Hoxc8-202,Hoxc5;Hoxc8;Hoxc8,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,134,15424,ENSMUSG00000022485,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
3342,cg21814894,0.000000115,0.0000039,0.029446389,0.976527524,gain,ns,0.00000103,0.00000662,0.155620832,0.876433187,pos,ns,0.001684829,0.001940466,0.86826003,0.385923658,pos,ns,0.413498597,-0.0000414,0.0000667,-0.619756134,0.535873609,neg,ns,0.927618864,Gm11890,Gm11890_Intergenic_upstream,4,23753277,23753326,23753277,23753278,50,-,CGCCAGCCTCCCCTGAGTTTACAGCAAATTACTGAAAGCAGGGCTCGCAT,Distal Intergenic,4,23659928,23660344,417,2,Gm11890-201,-92982,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,15,32,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18670,cg15982050,-0.00000173,0.00000193,-0.892909446,0.372598283,loss,ns,0.000000511,0.00000328,0.15554085,0.876496183,pos,ns,0.001583317,0.000962034,1.645800932,0.1008182,pos,ns,0.996461059,-0.0000725,0.0000331,-2.19279437,0.029065024,neg,ns,0.954991144,Skap1,Skap1_Intron,11,96644635,96644684,96644683,96644684,50,-,TTGTTCCCTTTTATAAACTCATAGTTTTTGGTTGACATTGCTTTTATGCG,"Intron (Skap1-204/Skap1, intron 4 of 12)",11,96464593,96758941,294349,1,Skap1-204,180042,Skap1-204;Skap1-203;Skap1-209;Skap1-201;Skap1-206;Skap1-208,Skap1;Skap1;Skap1;Skap1;Skap1;Skap1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,40,46,78473,ENSMUSG00000057058,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
12768,cg24688511,0.00003,0.00000503,5.960438721,6.84E-09,gain,yes,-0.00000133,0.00000855,-0.155445115,0.876571587,neg,ns,0.007981558,0.002505398,3.185744864,0.001590832,pos,ns,2.798375607,-0.000155567,0.0000862,-1.805546992,0.071959133,neg,ns,0.106617306,Phox2b,Phox2b_fiveUTR,5,67099272,67099321,67099320,67099321,50,-,TTGATTCCTGCATCTCTAATTAGAATTTAATACCACACCATTACGCACCG,Promoter (<=1kb),5,67094399,67099301,4903,2,Phox2b-201,0,Phox2b-201;Phox2b-202,Phox2b;Phox2b,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,28,18935,ENSMUSG00000012520,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
2169,cg14303975,-0.000000401,0.0000014,-0.2863024,0.774837757,loss,ns,-0.00000037,0.00000238,-0.155437056,0.876577934,neg,ns,-0.000544294,0.000697505,-0.780343175,0.435784328,neg,ns,0.360728393,0.000011,0.000024,0.458730699,0.646749015,pos,ns,0.966531784,Cyp7b1,Cyp7b1_Intron,3,18186522,18186571,18186570,18186571,50,+,GTTATCAACCATAAGGGCCCATACACTTCATCAACCTCTAACAATAGCCG,"Intron (Cyp7b1-201/Cyp7b1, intron 1 of 5)",3,18071950,18243338,171389,2,Cyp7b1-201,56767,Cyp7b1-201,Cyp7b1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,17,13123,ENSMUSG00000039519,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8544,cg27113320,0.00000693,0.00000714,0.970500881,0.332553486,gain,ns,-0.00000188,0.0000121,-0.155410679,0.87659871,neg,ns,0.013758645,0.003552025,3.873465544,0.000130924,pos,ns,3.882980795,-0.000493138,0.000122154,-4.037021576,0.0000683,neg,ns,0.777495236,Btrc,Btrc_Intron,19,45324768,45324817,45324768,45324769,50,+,CGGGCCCTGTTCTGACATTTTAAACCCCATAAATGACAGTAGTGCTCTAA,"Intron (Gm28578-208/Gm28578-208, intron 3 of 6)",19,45363734,45507736,144003,1,Btrc-204,-38917,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,63,98,12234,ENSMUSG00000025217,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20659,cg00976203,-0.00000034,0.00000274,-0.124035916,0.901367223,loss,ns,0.000000722,0.00000465,0.155213093,0.876754339,pos,ns,0.004531428,0.001363673,3.32295653,0.00099734,pos,ns,3.001156802,-0.0000661,0.0000469,-1.408795005,0.159898007,neg,ns,0.952287674,Adamts6,Adamts6_threeUTR,13,104369699,104369748,104369747,104369748,50,+,GAAGCCGTCCTGATTAAATAATAAAGAACCCATTTCCGTTAAAATGGACG,3' UTR,13,104287835,104496695,208861,1,Adamts6-207,81864,Adamts6-207;Adamts6-202;Adamts6-201;Adamts6-206;Adamts6-203;Adamts6-204;Adamts6-205,Adamts6;Adamts6;Adamts6;Adamts6;Adamts6;Adamts6;Adamts6,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,19,31,108154,ENSMUSG00000046169,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27501,cg22440415,0.0000149,0.0000121,1.229523617,0.219807909,gain,ns,-0.0000032,0.0000206,-0.155161112,0.876795283,neg,ns,-0.0069151,0.006033857,-1.146049611,0.25265851,neg,ns,0.59746607,0.000254643,0.000207504,1.227171924,0.220689101,pos,ns,0.545738248,Pbx1,Pbx1_Intergenic_upstream,1,168662686,168662735,168662686,168662687,50,-,CGATAATCAACACCTCTAATTAGCACTTAGAAATGTCTGGCTCCCAAGGC,Distal Intergenic,1,168119364,168432270,312907,2,Pbx1-208,-230465,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,17,84,18514,ENSMUSG00000052534,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
692,cg01901100,-0.0000229,0.00000902,-2.542921201,0.011478883,loss,ns,0.00000238,0.0000153,0.155134885,0.876815942,pos,ns,-0.013780135,0.004487502,-3.070780577,0.002324059,neg,ns,2.633752776,0.000211573,0.000154325,1.370956418,0.171380242,pos,ns,0.799291868,Apob,Apob_Intron,12,8108697,8108746,8108745,8108746,50,-,TAAACTCAGGAAATACTTAACATTATAATCATTTTTCTTGTTTGAACACG,"Intron (Gm33037-201/Gm33037-201, intron 2 of 3)",12,8012359,8016835,4477,1,Apob-203,96387,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,4,238055,ENSMUSG00000020609,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26485,cg13475927,-0.00000507,0.0000166,-0.304803218,0.76072056,loss,ns,0.00000438,0.0000282,0.155126356,0.876822659,pos,ns,0.005482824,0.008272004,0.662816872,0.507940358,pos,ns,0.294187279,-0.000426092,0.000284474,-1.497826665,0.135195814,neg,ns,0.307332452,Casz1,Casz1_Intergenic_upstream,4,148771921,148771970,148771969,148771970,50,-,CTGTGATATCCTGAGAGATGCGACAATTAATTTTCTTTTAATCAAGGTCG,Distal Intergenic,4,148804429,148954889,150461,1,Casz1-202,-32508,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,14,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
6433,cg26643631,0.0000943,0.00000844,11.16624196,1.47E-24,gain,yes,-0.00000222,0.0000143,-0.155108476,0.876836743,neg,ns,0.001574745,0.004201446,0.374810325,0.708057816,pos,ns,0.149931279,0.000187397,0.000144487,1.29697882,0.195602949,pos,ns,0.187429504,Grhl2,Grhl2_fiveUTR,15,37233244,37233293,37233292,37233293,50,-,GGGACGGAAAAGCAGAATTACCTGTAGCTCTTGTTCTGCCATCTCGGGCG,Promoter (<=1kb),15,37233036,37333647,100612,1,Grhl2-203,208,Grhl2-203;Grhl2-201;Grhl2-204,Grhl2;Grhl2;Grhl2,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,6,8,252973,ENSMUSG00000022286,conserved gene and region,15,37233199,37233293,95,*,95,10,0.642105263,1.158536585,0.105263158,3.77E-08,CpGisland,TRUE,U3,Pr-B
20159,cg03879673,0.000105063,0.000008,13.13792062,1.21E-31,gain,yes,-0.0000021,0.0000136,-0.154880271,0.877016498,neg,ns,0.003466909,0.003980153,0.871049238,0.384401312,pos,ns,0.415215138,0.000175305,0.000136877,1.280746779,0.201239985,pos,ns,0.143818017,Sgip1,Sgip1_fiveUTR,4,102760219,102760268,102760267,102760268,50,-,GCTCTCCGGGGGTATTGTGTCAGGAGATGCAGGCTGGCTACCATGTGACG,5' UTR,4,102741297,102870826,129530,1,Sgip1-204,18922,Sgip1-204;Sgip1-212;Sgip1-201;Sgip1-208;Sgip1-202;Sgip1-214;Sgip1-207;Sgip1-203;Sgip1-209;Sgip1-215;Sgip1-205,Sgip1;Sgip1;Sgip1;Sgip1;Sgip1;Sgip1;Sgip1;Sgip1;Sgip1;Sgip1;Sgip1,0;0;0;-60;0;-84;-87;0;-107;-197;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,6,73094,ENSMUSG00000028524,conserved gene but different region,4,102760267,102760321,55,*,55,7,0.727272727,1.002604167,0.127272727,0.00000255,CpGisland,TRUE,NA,NRS
26672,cg18886838,-0.0000127,0.00000512,-2.472643291,0.013947998,loss,ns,0.00000135,0.0000087,0.154827813,0.87705782,pos,ns,0.000684098,0.002548417,0.26844031,0.788538961,pos,ns,0.103176844,-0.0000839,0.0000876,-0.95726496,0.339179474,neg,ns,0.880779124,Rere,Rere_Intron,4,150439696,150439745,150439744,150439745,50,+,AGAGAGCATGCTGGGCTGCTGCAAGGAGCAGGAGCTGGCAATCAGCAGCG,"Intron (Rere-202/Rere, intron 4 of 22)",4,150281646,150621966,340321,1,Rere-202,158050,Rere-202;Rere-204,Rere;Rere,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,7,68703,ENSMUSG00000039852,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11212,cg05805769,0.00000226,0.00000208,1.09040995,0.276379434,gain,ns,-0.000000546,0.00000353,-0.154812652,0.877069762,neg,ns,0.000966847,0.001033654,0.935368115,0.350326676,pos,ns,0.455526792,0.000041,0.0000355,1.154064843,0.249362512,pos,ns,0.955189815,Ablim1,Ablim1_Exon,19,57049488,57049537,57049488,57049489,50,-,CGGTAAATGTTGATTCCTTGATCTGTGGAAATGAAAAGCAAAGGTGTGTG,"Exon (Ablim1-201/Ablim1, exon 17 of 26)",19,57032733,57216032,183300,2,Ablim1-201,166495,Ablim1-201;Ablim1-207;Ablim1-203;Ablim1-202;Ablim1-213;Ablim1-206;Ablim1-205;Ablim1-210;Ablim1-212;Ablim1-211;Ablim1-209;Ablim1-208;Ablim1-221;Ablim1-219;Ablim1-214,Ablim1;Ablim1;Ablim1;Ablim1;Ablim1;Ablim1;Ablim1;Ablim1;Ablim1;Ablim1;Ablim1;Ablim1;Ablim1;Ablim1;Ablim1,0;0;0;0;0;0;0;0;0;0;0;0;0;-2250;-4546,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,4,226251,ENSMUSG00000025085,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15189,cg11630337,0.00000337,0.00000416,0.80909002,0.419083904,gain,ns,0.00000109,0.00000707,0.154731267,0.877133871,pos,ns,0.002277237,0.002070097,1.100062908,0.272158221,pos,ns,0.565178542,-0.0000513,0.0000712,-0.721151358,0.471359901,neg,ns,0.908638046,Ddx17,Ddx17_threeUTR,15,79533119,79533168,79533119,79533120,50,+,CGTGGCAGTGAGAAGTCCCCACACACGCTCGCTCTGTGAACTGGCTTAGA,3' UTR,15,79527736,79546741,19006,2,Ddx17-201,13573,Ddx17-201;Ddx17-203;Ddx17-204;Ddx17-202,Ddx17;Ddx17;Ddx17;Ddx17,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,9,14,67040,ENSMUSG00000055065,conserved gene and region,15,79532980,79533149,170,*,170,13,0.594117647,0.886126704,0.076470588,9.43E-09,CpGisland,TRUE,U10,Tr-S
6394,cg12933827,-0.0000138,0.00000907,-1.527619059,0.1276268,loss,ns,0.00000238,0.0000154,0.154620435,0.877221177,pos,ns,0.00023111,0.004512204,0.051218895,0.959184082,pos,ns,0.018098037,-0.000245321,0.000155174,-1.580938844,0.114911749,neg,ns,0.65081934,Gm1043,Gm1043_fiveUTR,5,37124972,37125021,37124972,37124973,50,-,CGAAGTAAGAGACTCTATCTGTTGTAAACTCTCAAACGGAGCAGACATTC,5' UTR,5,37085370,37229342,143973,1,Gm1043-205,39602,Gm1043-205;Jakmip1-201;Jakmip1-202;Jakmip1-212;Jakmip1-215;Jakmip1-203,Gm1043;Jakmip1;Jakmip1;Jakmip1;Jakmip1;Jakmip1,0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,3,381634,ENSMUSG00000117286,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26163,cg09584851,-0.0000132,0.00000516,-2.566366813,0.01074649,loss,ns,-0.00000136,0.00000877,-0.154601729,0.877235912,neg,ns,-0.005449267,0.002568545,-2.121538562,0.034669658,neg,ns,1.460050441,0.0000945,0.0000883,1.070299228,0.285317257,pos,ns,0.063702883,Lmo4,Lmo4_Intron,3,144203512,144203561,144203512,144203513,50,+,CGAAAGAGTCCCGGAACGTGTGTCCAGTGACCGCACAATAAACCAGAATA,"Intron (Lmo4-201/Lmo4, intron 1 of 4)",3,144188530,144205220,16691,2,Lmo4-201,1659,Lmo4-203;Lmo4-201;Lmo4-202;Lmo4-207;Lmo4-208;Lmo4-205;Lmo4-204,Lmo4;Lmo4;Lmo4;Lmo4;Lmo4;Lmo4;Lmo4,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,54,16911,ENSMUSG00000028266,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
1090,cg12149905,0.0000407,0.00000917,4.440519799,0.0000125,gain,ns,-0.00000241,0.0000156,-0.15455221,0.87727492,neg,ns,0.006070678,0.004565096,1.329803057,0.18456079,pos,ns,0.733860559,-0.000157923,0.000156993,-1.005921712,0.315237754,neg,ns,0.070792459,Ptprg,Ptprg_fiveUTR,14,11553495,11553544,11553495,11553496,50,-,CGCCGGCTTTAAAGTCTCTGCCAGGATCCATGCTCACATGTTACTTCCTG,Promoter (<=1kb),14,11553532,12242041,688510,1,Ptprg-201,0,Ptprg-201;Ptprg-204;Ptprg-205,Ptprg;Ptprg;Ptprg,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,8,23,19270,ENSMUSG00000021745,conserved gene but different region,14,11553308,11553499,192,*,192,31,0.755208333,1.152148664,0.161458333,3.11E-31,CpGisland,TRUE,NA,NRS
754,cg16673096,-0.00000312,0.000000968,-3.220529876,0.001415352,loss,ns,0.000000254,0.00000164,0.154471851,0.877338224,pos,ns,0.000279331,0.000481609,0.579994826,0.562339411,pos,ns,0.250001479,0.0000113,0.0000166,0.685246697,0.493700329,pos,ns,0.969442225,Rundc3b,Rundc3b_Exon,5,8579044,8579093,8579092,8579093,50,-,ACATTTTCCATATTTTCAATGCTGCAGATACAATTCTGTGAAACTTTCCG,"Exon (Rundc3b-201/Rundc3b, exon 3 of 10)",5,8490334,8622952,132619,2,Rundc3b-201,43859,Rundc3b-201;Rundc3b-202,Rundc3b;Rundc3b,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,242819,ENSMUSG00000040570,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6694,cg17564494,-0.00000281,0.00000125,-2.253157507,0.024947982,loss,ns,0.000000327,0.00000212,0.154470189,0.877339533,pos,ns,0.000419242,0.00062079,0.675335519,0.499966038,pos,ns,0.301059495,-0.0000245,0.0000213,-1.147804422,0.251934306,neg,ns,0.058825369,Ubr5,Ubr5_Promoter,15,38078076,38078125,38078124,38078125,50,-,CCATCCGCATTGTCTGTCTCAATTCAACTTTGACTAATATGGATTCCTCG,Promoter (<=1kb),15,37967859,38078854,110996,2,Ubr5-201,729,Ubr5-201;Ubr5-204,Ubr5;Ubr5,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,1,6,70790,ENSMUSG00000037487,conserved gene and region,15,38078124,38079244,1121,*,1121,160,0.748438894,1.019728239,0.142729706,4.06E-149,CpGisland,TRUE,U1,Pr-A
21573,cg20489411,-0.00000149,0.00000326,-0.456145714,0.64860459,loss,ns,0.000000856,0.00000554,0.154406241,0.877389909,pos,ns,-0.001064779,0.001623776,-0.65574271,0.512476047,neg,ns,0.290326429,-0.00000687,0.0000558,-0.122976465,0.902205424,neg,ns,0.894826162,Celsr2,Celsr2_Exon,3,108399878,108399927,108399926,108399927,50,+,CCACCTTCACAGCCATTGGTGGTGACCTCAGCAAAAGGGTTGTCACAGCG,"Exon (Celsr2-201/Celsr2, exon 14 of 34)",3,108390851,108415552,24702,2,Celsr2-201,15625,Celsr2-201;Celsr2-206;Celsr2-202;Celsr2-207,Celsr2;Celsr2;Celsr2;Celsr2,0;0;-3385;2662,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,4,53883,ENSMUSG00000068740,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11168,cg07944287,-0.0000364,0.0000121,-3.010022681,0.002826824,loss,ns,0.00000317,0.0000205,0.154396155,0.877397854,pos,ns,-0.003850999,0.006020307,-0.63966819,0.52286077,neg,ns,0.281613942,-0.000129792,0.000207038,-0.626899943,0.53118623,neg,ns,0.199450738,Rfx2,Rfx2_fiveUTR,17,56830934,56830983,56830934,56830935,50,+,CGTGTTGGTCCCCGTTGGTAAGTAACAGTCTCCACGGCTACAGTCTCTAT,Promoter (<=1kb),17,56786611,56830971,44361,2,Rfx2-203,0,Rfx2-202;Rfx2-201;Rfx2-203;Rfx2-205,Rfx2;Rfx2;Rfx2;Rfx2,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,1,19725,ENSMUSG00000024206,conserved gene and region,17,56830746,56831229,484,*,484,66,0.762396694,0.966594045,0.136363636,2.85E-60,CpGisland,TRUE,NA,NRS
21154,cg19769850,0.000162034,0.00000915,17.70897425,5.67E-49,gain,yes,-0.0000024,0.0000155,-0.154295408,0.87747722,neg,ns,0.022012291,0.004553967,4.833651782,0.00000211,pos,ns,5.675116118,-0.000277992,0.000156611,-1.77505184,0.076870506,neg,ns,0.160099112,Gm17304,Gm17304_Exon,5,106574944,106574993,106574944,106574945,50,+,CGTGGAAACCCTTCCACCAAAATGAGCTGTGATATCCTTTTGATGGCTAT,"Exon (Gm29464-201/Gm29464-201, exon 1 of 1)",5,106609098,106609201,104,1,Gm17304-201,-34105,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,35,,NA,mapped to different genes,5,106574318,106574945,628,*,628,82,0.75477707,0.925521208,0.130573248,6.09E-73,CpGisland,TRUE,NA,NRS
3578,cg03749550,-0.00000663,0.00000716,-0.926255092,0.355033954,loss,ns,0.00000187,0.0000122,0.154105833,0.877626565,pos,ns,-0.009559057,0.003562401,-2.683319046,0.007680891,neg,ns,2.114588385,0.000261861,0.000122511,2.137454285,0.033343174,pos,ns,0.207365541,Ccn2,Ccn2_Exon,10,24595322,24595371,24595370,24595371,50,+,GCTTTTTCAGACGGAGGAATGCTGAGTGTCAAGGGGTCAGGATCAATCCG,Promoter (<=1kb),10,24595442,24598678,3237,1,Ccn2-201,-71,Ccn2-201;Ccn2-203;Ccn2-202,Ccn2;Ccn2;Ccn2,0;-355;-409,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,3,14219,ENSMUSG00000019997,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
6392,cg19282146,-0.0000598,0.00000784,-7.627910403,2.95E-13,loss,yes,-0.00000205,0.0000133,-0.154074667,0.877651117,neg,ns,-0.009967356,0.003903214,-2.553627715,0.011139083,neg,ns,1.953150552,0.000144395,0.000134231,1.075716354,0.282890617,pos,ns,0.762604546,Pknox2,Pknox2_Intron,9,37121933,37121982,37121981,37121982,50,+,GCACATAAATTAAAGCGGCCAACTTGTATGCACACATGCACACTGGCACG,"Intron (Pknox2-201/Pknox2, intron 1 of 12)",9,36890982,37147407,256426,2,Pknox2-201,25425,Pknox2-201;Pknox2-202;Pknox2-210;Pknox2-209;Pknox2-212;Pknox2-211,Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,47,208076,ENSMUSG00000035934,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17902,cg01636866,0.00000635,0.00000413,1.539021347,0.124819156,gain,ns,0.00000108,0.00000701,0.154068041,0.877656337,pos,ns,-0.002224056,0.002053188,-1.083220618,0.279552308,neg,ns,0.553536917,-0.000122168,0.0000706,-1.730198661,0.084590015,neg,ns,0.794111455,Dlg2,Dlg2_Exon,7,92418108,92418157,92418108,92418109,50,-,CGACGGTTATGGAACAAAGACTCTGAGTAAGTTTCCAGGAATGGTCACTG,"Exon (Dlg2-217/Dlg2, exon 22 of 28)",7,90477231,92449247,1972017,1,Dlg2-217,1940877,Dlg2-217;Dlg2-204;Dlg2-201;Dlg2-220;Dlg2-218;Dlg2-219;Dlg2-203;Dlg2-202;Dlg2-212;Dlg2-208;Dlg2-207;Dlg2-214,Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2;Dlg2,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,21,23859,ENSMUSG00000052572,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14483,cg27353147,-0.00000749,0.00000153,-4.910932782,0.00000147,loss,yes,0.000000399,0.00000259,0.153911368,0.877779767,pos,ns,-0.000326291,0.00075928,-0.429737642,0.667685047,neg,ns,0.17542835,-0.00000896,0.0000261,-0.343194388,0.731684846,neg,ns,0.971491559,Ptprd,Ptprd_threeUTR,4,75941291,75941340,75941339,75941340,50,-,TCAGCAAAGAACTGATTTTCATACAGACTTCTTTCGCCACCAATGTAACG,3' UTR,4,75941238,76449980,508743,2,Ptprd-206,508640,Ptprd-206;Ptprd-204;Ptprd-213;Ptprd-220;Ptprd-203;Ptprd-217;Ptprd-218;Ptprd-219;Ptprd-201,Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,8,32,19266,ENSMUSG00000028399,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5644,cg11514716,0.000000653,0.00000111,0.590198107,0.55548781,gain,ns,-0.000000289,0.00000188,-0.15387231,0.877810537,neg,ns,0.000386717,0.000550555,0.702412536,0.482949012,pos,ns,0.316098718,0.00002,0.0000189,1.053901346,0.292748811,pos,ns,0.967468028,Mapkap1,Mapkap1_Intron,2,34462689,34462738,34462689,34462690,50,-,CGATATGGATAAAGAAACCCAGCATTTTAAACTGTCAGAGCTGGGAGCAA,"Intron (Mapkap1-210/Mapkap1, intron 4 of 4)",2,34406771,34497716,90946,1,Mapkap1-210,55918,Mapkap1-210;Mapkap1-204;Mapkap1-211;Mapkap1-202;Mapkap1-201;Mapkap1-209;Mapkap1-203;Mapkap1-207;Mapkap1-206,Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,59,227743,ENSMUSG00000038696,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4847,cg01960173,-0.00000252,0.00000161,-1.563912382,0.118858369,loss,ns,0.000000421,0.00000273,0.153798354,0.877868803,pos,ns,0.000132274,0.000801022,0.165132196,0.868947562,pos,ns,0.061006431,0.0000479,0.0000275,1.740553706,0.082754082,pos,ns,0.047856806,Usf2,Usf2_Exon,7,30955963,30956012,30956011,30956012,50,-,AGCTGACCATCAGTCACCTGGACTACGCGGTATGTCACCTGCAGGGGGCG,Promoter (<=1kb),7,30945248,30956803,11556,2,Usf2-201,791,Lsr-202;Lsr-201;Lsr-203;Lsr-205;Lsr-204;Usf2-201;Usf2-205;Usf2-208;Usf2-203;Usf2-209;Usf2-210;Usf2-211;Usf2-202;Usf2-207;Usf2-204;Usf2-206,Lsr;Lsr;Lsr;Lsr;Lsr;Usf2;Usf2;Usf2;Usf2;Usf2;Usf2;Usf2;Usf2;Usf2;Usf2;Usf2,17414;17452;17415;17310;17403;0;0;0;0;0;0;0;0;-513;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,22282,ENSMUSG00000058239,conserved gene and region,7,30955786,30957106,1321,*,1321,161,0.774413323,0.813311664,0.121877366,5.10E-137,CpGisland,TRUE,U1,Pr-A
4398,cg26313355,-0.0000137,0.00000605,-2.256493371,0.024736052,loss,ns,-0.00000158,0.0000103,-0.153768563,0.877892273,neg,ns,-0.000299713,0.003012686,-0.099483758,0.920818485,neg,ns,0.035825971,-0.0000774,0.000103606,-0.747296413,0.455451104,neg,ns,0.922652613,Unc5d,Unc5d_Exon,8,28760820,28760869,28760820,28760821,50,+,CGTTTCTGCCATCCTCTACCACAGCGAACATTGCAGGCTGACCACTCTGT,"Exon (Unc5d-201/Unc5d, exon 6 of 18)",8,28646717,29219636,572920,2,Unc5d-201,458767,Unc5d-201;Unc5d-204;Unc5d-202;Unc5d-203;Unc5d-205,Unc5d;Unc5d;Unc5d;Unc5d;Unc5d,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,11,210801,ENSMUSG00000063626,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10626,cg22661680,-0.0000206,0.00000227,-9.089696579,1.21E-17,loss,yes,-0.000000593,0.00000386,-0.153708153,0.877939867,neg,ns,0.003691948,0.001130118,3.266870153,0.001209368,pos,ns,2.917441536,-0.000238022,0.0000389,-6.12437205,2.75E-09,neg,yes,0.946037452,Gm12477,Gm12477_Intron,4,54689168,54689217,54689216,54689217,50,-,GTGACTATTGAGGCTGATCCAATTTTCTAAAGTTCTCCAATTGGTTCACG,"Intron (Gm12478-201/Gm12478-201, intron 1 of 1)",4,54669622,54670192,571,2,Gm12477-201,-19025,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,6,100416401,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18911,cg14703363,0.00000504,0.00000916,0.550766334,0.582190551,gain,ns,-0.00000239,0.0000156,-0.153679501,0.87796244,neg,ns,-0.004458075,0.004558349,-0.97800213,0.328835861,neg,ns,0.483020827,0.000234112,0.000156761,1.493429922,0.136341766,pos,ns,0.758242039,Dach1,Dach1_Intron,14,97868692,97868741,97868740,97868741,50,+,TAAATCCTTAACTGCCTGAGATCGTTGAGAGCAAAACAAAGTAACACTCG,"Intron (Dach1-201/Dach1, intron 6 of 10)",14,97786853,98169543,382691,2,Dach1-201,300802,Dach1-201;Dach1-202;Dach1-203,Dach1;Dach1;Dach1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,76,13134,ENSMUSG00000055639,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23462,cg10193349,-0.000000806,0.00000829,-0.097231114,0.922605692,loss,ns,0.00000216,0.0000141,0.153642367,0.877991697,pos,ns,0.002138231,0.004127469,0.518048998,0.604793605,pos,ns,0.21839281,-0.0000946,0.000141943,-0.66614483,0.505813941,neg,ns,0.277125639,Gm9267,Gm9267_Intron,12,118529759,118529808,118529807,118529808,50,-,ATCATTAAGTAAATTATTTTAAGATCAAACACCCTGCAGGGACAATGGCG,"Intron (D230030E09Rik-201/D230030E09Rik-201, intron 1 of 3)",12,118602677,118603080,404,1,Gm9267-201,-72918,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,20,668611,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
18933,cg07249227,-0.00000314,0.00000108,-2.894115049,0.004071934,loss,ns,0.000000283,0.00000184,0.15345088,0.878142563,pos,ns,0.001014884,0.000539734,1.880340774,0.060999089,pos,ns,1.214676654,-0.0000532,0.0000186,-2.864508742,0.00446166,neg,ns,0.028474296,Zbtb21,Zbtb21_fiveUTR,16,97962607,97962656,97962655,97962656,50,-,CTTGAATTTGACGTCATCCCACACCAGGGATGAGGTCATCGCAGGCATCG,Promoter (<=1kb),16,97943357,97962615,19259,2,Zbtb21-207,0,C2cd2-207;Zbtb21-207;Zbtb21-203;Zbtb21-202;Zbtb21-201;Zbtb21-208;Zbtb21-205;Zbtb21-206,C2cd2;Zbtb21;Zbtb21;Zbtb21;Zbtb21;Zbtb21;Zbtb21;Zbtb21,-9;0;0;0;0;-14;-6;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,1,114565,ENSMUSG00000046962,mapped to different genes,16,97962424,97962859,436,*,436,52,0.688073395,1.011285071,0.119266055,4.25E-44,CpGisland,TRUE,NA,NRS
77,cg18278083,0.000014,0.00000324,4.327403778,0.0000204,gain,ns,0.000000845,0.00000551,0.1533171,0.878247967,pos,ns,-0.000097,0.001615023,-0.060040334,0.952162198,neg,ns,0.021289065,0.0000868,0.0000555,1.563197924,0.119026282,pos,ns,0.054429178,Plag1,Plag1_Intron,4,3937195,3937244,3937243,3937244,50,-,TTTCACGTTTTCTCATTGTCGGTTGAGTTATAAAAGGCTTTTGCCCTTCG,"Intron (Plag1-201/Plag1, intron 1 of 5)",4,3900996,3938382,37387,2,Plag1-201,1138,Chchd7-202;Chchd7-206;Chchd7-213;Chchd7-207;Chchd7-208;Chchd7-201;Chchd7-205;Chchd7-214;Chchd7-203;Chchd7-209;Chchd7-210;Chchd7-211;Chchd7-204;Plag1-201;Plag1-202;Plag1-204;Plag1-203,Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Plag1;Plag1;Plag1;Plag1,-1644;-1644;-1646;-1670;-1670;-1670;-1670;-1670;-1676;-1799;-2178;-2256;-3610;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,22,56711,ENSMUSG00000003282,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
16044,cg22215220,0.0000554,0.0000088,6.297220095,1.04E-09,gain,yes,-0.00000229,0.000015,-0.153303202,0.878258917,neg,ns,0.010320632,0.004381559,2.355470255,0.019121984,pos,ns,1.71846705,-0.000343934,0.000150681,-2.282523097,0.023135508,neg,ns,0.417004095,Bnc2,Bnc2_Intron,4,84282490,84282539,84282538,84282539,50,+,AATGTGGCAGGCAGACAAAATTGACAGTCTCATCTTGTCAACAAGGGGCG,"Intron (Bnc2-201/Bnc2, intron 7 of 7)",4,84275095,84675034,399940,2,Bnc2-201,392495,Bnc2-201;Bnc2-202;Bnc2-214;Bnc2-218;Bnc2-215;Bnc2-222;Bnc2-216;Bnc2-213;Bnc2-219,Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,91,242509,ENSMUSG00000028487,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18310,cg20334331,0.0000696,0.0000111,6.28004827,1.14E-09,gain,yes,0.00000288,0.0000188,0.153274412,0.878281601,pos,ns,0.013655693,0.005513338,2.476846577,0.013788038,pos,ns,1.860497525,-0.000227911,0.000189603,-1.202039241,0.230265738,neg,ns,0.170104671,Gm48316,Gm48316_Intergenic_upstream,13,94707120,94707169,94707168,94707169,50,-,TCACCTCGCCTAATCTAGCAGCTAATATTTATTAGAGCCAATTTATACCG,Distal Intergenic,13,94752270,94752593,324,1,Gm48316-201,-45150,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,36,42,,NA,mapped to different genes,13,94707063,94707220,158,*,158,11,0.5,1.114102564,0.069620253,0.000000471,CpGisland,TRUE,U13,Hc-P
12634,cg17824274,-0.00000668,0.00000243,-2.756088593,0.006196049,loss,ns,0.000000631,0.00000412,0.153127766,0.878397145,pos,ns,0.00021556,0.001207061,0.178582377,0.858382284,pos,ns,0.066319254,-0.000135058,0.0000415,-3.253563166,0.001265473,neg,ns,0.934334945,Galnt3,Galnt3_Exon,2,66093562,66093611,66093610,66093611,50,+,CTCCTATAAAATATTTCCTTGTATTCATCCATCCAGACTTCTGCAAGGCG,"Exon (Galnt3-201/Galnt3, exon 7 of 11)",2,66082766,66124994,42229,2,Galnt3-201,31383,Galnt3-201;Galnt3-204;Galnt3-202;Galnt3-203,Galnt3;Galnt3;Galnt3;Galnt3,0;0;0;8872,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,14425,ENSMUSG00000026994,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15583,cg14254659,-0.0000127,0.00000332,-3.80945483,0.000167925,loss,ns,-0.000000865,0.00000565,-0.153121047,0.878402439,neg,ns,-0.001165133,0.001654636,-0.704163017,0.481859875,neg,ns,0.317079237,0.0000202,0.0000569,0.354534341,0.723179524,pos,ns,0.953732369,Gm11411,Gm11411_Intergenic_downstream,4,81937545,81937594,81937593,81937594,50,+,GAGATTCACTGCCAGGTGGACAGCTTTGATGGCAAGGAGGTGGCGTTCCG,Distal Intergenic,4,81696441,81697159,719,1,Gm11411-201,241104,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,6,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1334,cg05983909,0.0000342,0.0000131,2.610622859,0.009476904,gain,ns,-0.00000341,0.0000222,-0.153111848,0.878409687,neg,ns,0.00284864,0.006515393,0.437216872,0.662258492,pos,ns,0.178972464,0.000256167,0.000224064,1.143278706,0.253805017,pos,ns,0.274645553,Fezf2,Fezf2_Promoter,14,12348558,12348607,12348606,12348607,50,+,CTCACCCACACAATAAACACTGATCCTACTTTTATACATATTACTTCACG,Promoter (<=1kb),14,12343388,12348189,4802,2,Fezf2-202,-369,Fezf2-203;Fezf2-201;Fezf2-202,Fezf2;Fezf2;Fezf2,0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,45,54713,ENSMUSG00000021743,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
9567,cg13169490,0.0000476,0.00000496,9.589343742,3.06E-19,gain,yes,-0.00000129,0.00000843,-0.153002747,0.878495651,neg,ns,0.007120026,0.002469101,2.883651514,0.004205977,pos,ns,2.376133108,-0.000178648,0.0000849,-2.103920831,0.036190563,neg,ns,0.040796917,Foxg1,Foxg1_Promoter,12,49381744,49381793,49381792,49381793,50,-,TACGTAACCTGTCCTTTCCCAAGAATCCGGTTACACCGAATCATTTCACG,Promoter (<=1kb),12,49382660,49384364,1705,1,Foxg1-202,-916,Foxg1-202;Foxg1-203;Foxg1-204;Foxg1-201;Gm43517-201,Foxg1;Foxg1;Foxg1;Foxg1;Gm43517,0;-1007;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,11,27,15228,ENSMUSG00000020950,mapped to different genes,12,49381746,49381860,115,*,115,11,0.556521739,1.280364373,0.095652174,1.73E-08,CpGisland,TRUE,U13,Hc-P
14106,cg21821214,0.0000466,0.00000484,9.62352011,2.37E-19,gain,yes,-0.00000126,0.00000822,-0.15286307,0.878605709,neg,ns,0.010437938,0.002408946,4.332989837,0.0000199,pos,ns,4.701181501,-0.000147454,0.0000828,-1.779908824,0.076070368,neg,ns,0.08138819,Hoxd11,Hoxd11_Exon,2,74679630,74679679,74679678,74679679,50,-,TTAAGGTCAAGTTAGTGTCTTATCTTGGGTGACTCAAAATCACCGCATCG,Promoter (<=1kb),2,74679557,74687016,7460,1,Hoxd11-201,73,Hoxd11-201;Hoxd11-202;Hoxd12-201,Hoxd11;Hoxd11;Hoxd12,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,14,15431,ENSMUSG00000042499,conserved gene and region,2,74679673,74679866,194,*,194,20,0.587628866,1.2125,0.103092784,7.72E-16,CpGisland,TRUE,NA,NRS
4315,cg23837952,-0.0000144,0.00000327,-4.402005009,0.0000148,loss,ns,0.000000848,0.00000555,0.152834712,0.878628053,pos,ns,-0.000742344,0.001625553,-0.45667167,0.648226866,neg,ns,0.188272973,-0.0000297,0.0000559,-0.531680614,0.595328007,neg,ns,0.919885647,Tead3,Tead3_Exon,17,28336533,28336582,28336533,28336534,50,-,CGCACCTTCTTCCGAGCTAGAACCTGTATGTGGCTGGACACCTAGGGGCC,"Exon (Tead3-205/Tead3, exon 4 of 13)",17,28331671,28350346,18676,2,Tead3-205,13764,Tead3-205;Tead3-201;Tead3-206;Tead3-202;Tead3-207;Tead3-203;Tead3-204;Tead3-208,Tead3;Tead3;Tead3;Tead3;Tead3;Tead3;Tead3;Tead3,0;0;0;0;0;-1118;-189;-17,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,Exon,2,2,21678,ENSMUSG00000002249,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
199,cg05172686,3.77E-08,0.00000045,0.08377042,0.933293035,gain,ns,-0.000000117,0.000000764,-0.152829092,0.878632481,neg,ns,-0.000392158,0.000223943,-1.751149476,0.080909193,neg,ns,1.09200213,0.00000974,0.0000077,1.26521151,0.206745701,pos,ns,0.989800747,Cabp7,Cabp7_Exon,11,4738835,4738884,4738883,4738884,50,-,TGCGCAGCACCTGGTTGGCCGCAATGAGCATGACACTGATGATGAAGGCG,"Exon (Cabp7-201/Cabp7, exon 5 of 5)",11,4736892,4746778,9887,2,Cabp7-201,7894,Cabp7-201;Zmat5-201;Zmat5-203,Cabp7;Zmat5;Zmat5,0;34157;34127,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,192650,ENSMUSG00000009075,conserved gene and region,11,4738813,4738957,145,*,145,13,0.627586207,0.919512195,0.089655172,1.29E-09,CpGisland,TRUE,U11,Tr-P
4958,cg21235947,0.0000433,0.00000902,4.800418794,0.00000247,gain,ns,0.00000234,0.0000153,0.15275353,0.878692021,pos,ns,0.006982904,0.004487264,1.556160715,0.120690168,pos,ns,0.918328108,-0.00020499,0.000154317,-1.328372909,0.185032029,neg,ns,0.078143301,Foxq1,Foxq1_Exon,13,31559468,31559517,31559516,31559517,50,-,GGGCAAGGACAACTACTGGATGCTCAACCCCAACAGCGAGTACACCTTCG,"Exon (Foxq1-201/Foxq1, exon 1 of 1)",13,31556134,31560976,4843,1,Foxq1-201,3334,A530084C06Rik-201;Foxq1-201,A530084C06Rik;Foxq1,-135;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,15220,ENSMUSG00000038415,conserved gene and region,13,31559504,31560098,595,*,595,85,0.749579832,1.05259324,0.142857143,1.58E-79,CpGisland,TRUE,NA,NRS
22461,cg15774023,-0.0000416,0.00000737,-5.647814532,3.68E-08,loss,yes,-0.00000191,0.0000125,-0.152523345,0.878873402,neg,ns,-0.00611151,0.003666683,-1.66676821,0.096570465,neg,ns,1.015155678,-0.00000904,0.000126097,-0.071701367,0.942885804,neg,ns,0.704334563,Gm12830,Gm12830_Intergenic_upstream,4,114712337,114712386,114712337,114712338,50,-,CGTCGTAAAAATGAGATTAATTTTAATAAGGGCTTTCACCAAGCAGCAGA,Distal Intergenic,4,114821722,114856166,34445,1,Gm12830-201,-109385,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,12,26,433746,ENSMUSG00000055198,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2585,cg13339340,0.0000013,0.00000262,0.497224994,0.619382863,gain,ns,-0.00000068,0.00000446,-0.152499575,0.878892132,neg,ns,0.00385175,0.001305769,2.949793984,0.003421964,pos,ns,2.465724524,-0.00010298,0.0000449,-2.293281333,0.022500854,neg,ns,0.946538258,Rbm10,Rbm10_Intron,X,20641310,20641359,20641310,20641311,50,-,CGAGCGCTCCCCATCGCCTGATTCTTATGGACACAGTTCCCTGCCCTGTG,"Intron (Rbm10-205/Rbm10, intron 6 of 23)",20,20617503,20650888,33386,1,Rbm10-205,23807,Rbm10-205;Rbm10-204;Rbm10-203;Rbm10-206;Rbm10-201;Rbm10-202;Rbm10-207,Rbm10;Rbm10;Rbm10;Rbm10;Rbm10;Rbm10;Rbm10,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,14,236732,ENSMUSG00000031060,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7609,cg10895049,0.0000031,0.00000184,1.68589525,0.092822149,gain,ns,-0.000000476,0.00000312,-0.152387339,0.878980575,neg,ns,0.001072029,0.000915109,1.171476707,0.24230682,pos,ns,0.615634361,-0.0000143,0.0000315,-0.454735962,0.649617476,neg,ns,0.956996372,Pdss2,Pdss2_Intron,10,43421040,43421089,43421088,43421089,50,+,GGCAGATGGTATTTTTACCACTTCAGGCAAAACATGGCACCTATGGTTCG,"Intron (Pdss2-201/Pdss2, intron 7 of 7)",10,43221486,43440602,219117,1,Pdss2-201,199554,Pdss2-201;Pdss2-202;Pdss2-205,Pdss2;Pdss2;Pdss2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,6,71365,ENSMUSG00000038240,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9709,cg20986125,-0.0000609,0.0000129,-4.732984404,0.00000337,loss,ns,-0.00000333,0.0000219,-0.152348706,0.879011019,neg,ns,0.000745798,0.006405696,0.116427387,0.907389219,pos,ns,0.042206385,-0.000626923,0.000220291,-2.845880559,0.004723979,neg,ns,0.697310765,Sorcs1,Sorcs1_threeUTR,19,50151003,50151052,50151003,50151004,50,+,CGTCCTCCATTCAAACATTTACATAGGTAGGGATTTCTTTTGTGCTTTGA,3' UTR,19,50143299,50678646,535348,2,Sorcs1-205,527594,Sorcs1-205;Sorcs1-201;Sorcs1-208;Sorcs1-203;Sorcs1-204;Sorcs1-202;Sorcs1-207;Sorcs1-206,Sorcs1;Sorcs1;Sorcs1;Sorcs1;Sorcs1;Sorcs1;Sorcs1;Sorcs1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,5,8,58178,ENSMUSG00000043531,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14764,cg06115225,0.0000534,0.00000769,6.944850507,2.23E-11,gain,yes,0.00000199,0.0000131,0.152320392,0.87903333,pos,ns,0.006563803,0.003827593,1.714864341,0.087369455,pos,ns,1.058640375,-0.000126362,0.000131631,-0.959971791,0.33781754,neg,ns,0.054555539,Rnf165,Rnf165_fiveUTR,18,77565036,77565085,77565036,77565037,50,+,CGATACCTCTGTTTCGCACAGAGCCAAACACTGGAAGCACGAGATAGCCG,Promoter (<=1kb),18,77456110,77565136,109027,2,Rnf165-201,51,Rnf165-201;Rnf165-202;Rnf165-204;Rnf165-205;Rnf165-203,Rnf165;Rnf165;Rnf165;Rnf165;Rnf165,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,21,225743,ENSMUSG00000025427,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25463,cg02743560,-0.00000336,0.00000427,-0.786266582,0.432311932,loss,ns,0.00000111,0.00000726,0.152308493,0.879042707,pos,ns,-0.004836776,0.002126911,-2.274084873,0.023644174,neg,ns,1.626275846,0.0000349,0.0000731,0.477326493,0.633465996,pos,ns,0.839443147,Snap25,Snap25_Exon,2,136770148,136770197,136770148,136770149,50,-,CGGGCTTTGTGTGTGTCCCTGTAACAAGTAGGTGCTGCCTGCCTGCCTGA,"Exon (Snap25-201/Snap25, exon 5 of 8)",2,136713453,136782428,68976,1,Snap25-201,56695,Snap25-201;Snap25-202,Snap25;Snap25,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,9,20614,ENSMUSG00000027273,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22948,cg22249391,-0.0000243,0.0000104,-2.333504929,0.020260741,loss,ns,0.0000027,0.0000177,0.152177289,0.879146099,pos,ns,-0.001602529,0.005189511,-0.308801601,0.757679875,neg,ns,0.120514248,-0.0000888,0.000178467,-0.497407543,0.619254301,neg,ns,0.734387613,Gm13991,Gm13991_Intergenic_downstream,2,116322476,116322525,116322476,116322477,50,-,CGTCAGGAGCTGTGAATTTTAGTGCGAATTAAAGTAAGGCTAATTCTGCA,Distal Intergenic,2,116527843,116528490,648,2,Gm13991-201,206014,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,14,20,433464,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5424,cg17636542,0.0000236,0.0000132,1.785635553,0.075135731,gain,ns,-0.00000341,0.0000224,-0.152144836,0.879171673,neg,ns,0.006537805,0.006569203,0.995220375,0.320405281,pos,ns,0.494300335,-0.000422138,0.000225914,-1.868576349,0.0626248,neg,ns,0.748806625,Mvb12b,Mvb12b_Intergenic_upstream,2,33920227,33920276,33920227,33920228,50,+,CGCTCTAACAGCTGTCTGTAAAACCCGTTTATGGAGCCTCCATAAATTTC,Distal Intergenic,2,33729953,33887946,157994,2,Mvb12b-201,-32281,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,16,47,72543,ENSMUSG00000038740,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27590,cg02848871,0.0000067,0.0000064,1.045884896,0.296428996,gain,ns,-0.00000165,0.0000109,-0.152055055,0.879242424,neg,ns,-0.007577417,0.003186999,-2.377602625,0.018031819,neg,ns,1.743960472,0.000139336,0.000109601,1.271304967,0.204573218,pos,ns,0.821642801,Nos1ap,Nos1ap_Exon,1,170375244,170375293,170375292,170375293,50,-,TTACCTGTAGATGGGGTCCTGCATCACCAGCATCTTGCTCTCATCCCACG,"Exon (Nos1ap-202/Nos1ap, exon 4 of 10)",1,170317459,170589861,272403,2,Nos1ap-202,214568,Nos1ap-202;Nos1ap-203;Nos1ap-207;Nos1ap-206;Nos1ap-204;Nos1ap-201,Nos1ap;Nos1ap;Nos1ap;Nos1ap;Nos1ap;Nos1ap,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,70729,ENSMUSG00000038473,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27953,cg13448899,0.0000471,0.00000753,6.251414376,1.35E-09,gain,yes,-0.00000195,0.0000128,-0.152038717,0.879255299,neg,ns,0.01316525,0.003749084,3.511590649,0.0005116,pos,ns,3.291069397,-0.000369958,0.000128931,-2.869434871,0.004394545,neg,ns,0.482693396,Kcnh1,Kcnh1_Exon,1,192277081,192277130,192277081,192277082,50,+,CGTGGATGAGGTTAGTGCCTTTATGGGTGATCCAGGGAAGATTGGTTTTG,"Exon (Kcnh1-201/Kcnh1, exon 6 of 11)",1,192190774,192510159,319386,1,Kcnh1-201,86307,Kcnh1-201;Kcnh1-202,Kcnh1;Kcnh1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,16510,ENSMUSG00000058248,conserved gene and region,1,192276961,192277082,122,*,122,9,0.516393443,1.106854839,0.073770492,0.0000048,CpGisland,TRUE,NA,NRS
24480,cg25642165,-0.00000011,0.00000334,-0.033044732,0.973660182,loss,ns,-0.000000863,0.00000568,-0.151937832,0.879334803,neg,ns,0.001376915,0.001664183,0.827382304,0.408656847,pos,ns,0.38864122,-0.0000703,0.0000572,-1.22794415,0.220399464,neg,ns,0.883806474,Atxn2l,Atxn2l_Exon,7,126492770,126492819,126492770,126492771,50,+,CGGCTCCTCCTGGAAATCCAGGCGCCTGGCCAGGCTGCTCACCTTGGGGG,"Exon (Atxn2l-201/Atxn2l, exon 22 of 23)",7,126491708,126503437,11730,2,Atxn2l-201,10618,Atxn2l-201;Atxn2l-203;Atxn2l-206;Atxn2l-205;Atxn2l-202;Tufm-201;Tufm-202;Tufm-203;Tufm-204;Tufm-205;Tufm-206,Atxn2l;Atxn2l;Atxn2l;Atxn2l;Atxn2l;Tufm;Tufm;Tufm;Tufm;Tufm;Tufm,0;0;0;0;0;5409;5392;5141;4156;4084;3399,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,13,233871,ENSMUSG00000032637,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23288,cg16537155,-0.00000102,0.00000207,-0.492893397,0.622436854,loss,ns,-0.000000533,0.00000351,-0.151899177,0.879365265,neg,ns,0.001025321,0.001028752,0.996664937,0.319704491,pos,ns,0.495251262,-0.00000747,0.0000354,-0.211075893,0.832966736,neg,ns,0.96779189,Eri3,Eri3_Intron,4,117648501,117648550,117648549,117648550,50,-,TCCTTCCCCAACCCCAGGAAAACAATTAAGTACAGATCGATGGGTGGCCG,"Intron (Eri3-201/Eri3, intron 7 of 8)",4,117550365,117674297,123933,1,Eri3-201,98136,Eri3-201;Eri3-206;Eri3-203,Eri3;Eri3;Eri3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,82,97,140546,ENSMUSG00000033423,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1853,cg14944271,-0.00000295,0.00000199,-1.487339181,0.137941666,loss,ns,-0.000000512,0.00000337,-0.151894529,0.879368928,neg,ns,-0.00097647,0.0009883,-0.98803088,0.323908061,neg,ns,0.489578244,0.0000147,0.000034,0.433182565,0.665183392,pos,ns,0.958962577,Psat1,Psat1_Intergenic_downstream,19,15611428,15611477,15611428,15611429,50,+,CGATAATGACCATGTCATGATTGTGCAGTGATAGTTCCAAATGCCCCAAC,Distal Intergenic,19,15905130,15909712,4583,2,Psat1-204,298235,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,14,17,107272,ENSMUSG00000024640,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22211,cg00350004,-0.000026,0.0000112,-2.324000225,0.020771649,loss,ns,-0.00000288,0.000019,-0.15181653,0.879430397,neg,ns,-0.004843098,0.005562968,-0.870595919,0.384648482,neg,ns,0.414935977,-0.000178604,0.00019131,-0.933585217,0.351244478,neg,ns,0.814791895,Gm26897,Gm26897_Intergenic_downstream,5,111836785,111836834,111836833,111836834,50,-,TTTGCATATTAATAGTTTGCATATTAACCAGCGACTTCAGAGGGTGGGCG,Distal Intergenic,5,111733924,111734574,651,1,Gm26897-201,102910,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,11,23,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17588,cg24657259,0.0000189,0.0000424,0.444645989,0.656885881,gain,ns,-0.0000109,0.0000721,-0.151705524,0.879517879,neg,ns,0.035351706,0.021112573,1.674438602,0.095052942,pos,ns,1.022034436,-0.001932892,0.00072606,-2.662166891,0.008168919,neg,ns,0.618197253,Gm49612,Gm49612_Promoter,16,91140602,91140651,91140650,91140651,50,+,CGACAGGTGGCCTACTAGACAGCTCAATTAAGCTGCTCATTAAACACACG,Promoter (5-6kb),16,91135275,91135476,202,2,Gm49612-201,-5126,NA,NA,NA,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,5,5,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
6498,cg05600721,-0.0000032,0.00000288,-1.111464417,0.26722976,loss,ns,0.00000074,0.00000489,0.151352896,0.87979579,pos,ns,-0.000232205,0.001432153,-0.162136945,0.871303642,neg,ns,0.059830471,-0.0000427,0.0000493,-0.867471545,0.386354682,neg,ns,0.923589041,Zfp536,Zfp536_Intron,7,37515791,37515840,37515791,37515792,50,+,CGACATTTTAAGGCAGGTGTTCCGCAGTCCCCTAATAAAACAATTTTGCA,"Intron (Zfp536-211/Zfp536, intron 1 of 3)",7,37318024,37568390,250367,2,Zfp536-211,52550,Zfp536-211;Zfp536-202;Zfp536-201;Zfp536-203;Zfp536-206,Zfp536;Zfp536;Zfp536;Zfp536;Zfp536,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,73,112,243937,ENSMUSG00000043456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2041,cg14172598,0.0000936,0.0000143,6.525398629,2.76E-10,gain,yes,-0.00000368,0.0000244,-0.151164095,0.879944592,neg,ns,0.013507565,0.007138506,1.89221161,0.059394434,pos,ns,1.226254253,-0.000504828,0.000245493,-2.056387504,0.040581973,neg,ns,0.448805417,Gm38154,Gm38154_Intergenic_upstream,3,17620178,17620227,17620178,17620179,50,+,CGTAAAGGGGAAGTCACCTAGATAATGTCACTCACAAACATATGTTCCAC,Distal Intergenic,3,17670688,17671027,340,1,Gm38154-201,-50461,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,15,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7062,cg25113022,0.0000222,0.00000272,8.166668306,8.10E-15,gain,yes,-0.000000698,0.00000462,-0.150970105,0.880097489,neg,ns,0.002845089,0.001354895,2.099859148,0.036549198,pos,ns,1.437122151,-0.0000263,0.0000466,-0.564422963,0.572874464,neg,ns,0.068810993,Tfap2a,Tfap2a_Intron,13,40730617,40730666,40730617,40730618,50,-,CGCTGGGCAGCGTTCCTGGAGCCTCCTAATAGCAGATATTCATGACTATT,"Intron (Gm26688-201/Gm26688-201, intron 1 of 2)",13,40715675,40733823,18149,2,Tfap2a-202,3157,Tfap2a-201;Tfap2a-202;Tfap2a-205;Tfap2a-203;Tfap2a-209;Tfap2a-208;Tfap2a-206;Tfap2a-204;Tfap2a-207,Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,57,21418,ENSMUSG00000021359,mapped to different genes,13,40730503,40730628,126,*,126,13,0.571428571,1.267801858,0.103174603,2.07E-10,CpGisland,TRUE,U3,Pr-B
4340,cg24525396,-0.00000282,0.0000029,-0.970660667,0.332474013,loss,ns,-0.000000744,0.00000493,-0.150927112,0.880131375,neg,ns,0.001229004,0.001443964,0.851131947,0.395353026,pos,ns,0.403014933,-0.0000309,0.0000497,-0.621913468,0.534455881,neg,ns,0.931469255,Samd4b,Samd4b_Exon,7,28423434,28423483,28423482,28423483,50,-,ACCAGCACTGTTGGCCTCCGACTCCAGCAGGTGGATGTCATTGCAGTCCG,"Exon (Samd4b-204/Samd4b, exon 2 of 13)",7,28399522,28436191,36670,2,Samd4b-204,12708,Samd4b-204;Samd4b-201;Samd4b-202,Samd4b;Samd4b;Samd4b,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,11,233033,ENSMUSG00000109336,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
745,cg21144428,0.0000106,0.00000802,1.323723799,0.186570105,gain,ns,-0.00000206,0.0000136,-0.150900291,0.880152515,neg,ns,-0.002358667,0.003991021,-0.590993481,0.554955434,neg,ns,0.255741891,0.000171131,0.000137251,1.24684812,0.213394433,pos,ns,0.068466216,Rhob,Rhob_Exon,12,8499268,8499317,8499268,8499269,50,-,CGCAGGTCTTTTTTGTTGGCCACCAGGATGATGGGCACATTGGGACAGAA,Promoter (<=1kb),12,8497661,8500009,2349,2,Rhob-201,692,Rhob-201,Rhob,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,11852,ENSMUSG00000054364,conserved gene and region,12,8499083,8499269,187,*,187,26,0.679144385,1.209452736,0.139037433,3.22E-24,CpGisland,TRUE,U1,Pr-A
12858,cg03513784,-0.00000051,0.00000471,-0.108455551,0.913704502,loss,ns,0.00000121,0.000008,0.15079346,0.880236719,pos,ns,-0.001227346,0.00234271,-0.523900081,0.600722385,neg,ns,0.221326184,0.0000505,0.0000806,0.627034302,0.531098272,pos,ns,0.935154544,Ebf2,Ebf2_Intron,14,67370756,67370805,67370756,67370757,50,+,CGGTAAAATTTCGTTGTCATAGTAACAGAAAGGGAAATAGGCCTAGCTCA,"Intron (Ebf2-201/Ebf2, intron 7 of 16)",14,67233292,67429777,196486,1,Ebf2-201,137464,Ebf2-201;Ebf2-203;Ebf2-202,Ebf2;Ebf2;Ebf2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,21,13592,ENSMUSG00000022053,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2970,cg26499216,0.00000219,0.00000463,0.473025754,0.636527692,gain,ns,0.00000119,0.00000787,0.150730042,0.880286705,pos,ns,-0.002505976,0.00230491,-1.087233794,0.277778114,neg,ns,0.556301974,0.000130992,0.0000793,1.652570714,0.099430663,pos,ns,0.837441103,Lrmda,Lrmda_Intron,14,22198594,22198643,22198594,22198595,50,-,CGTGGACTGACAGTTATTAATGATTGTTATGATAAACAGACGAGTGCGAA,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,178882,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206,Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1505,cg20099485,0.00000146,0.0000014,1.048285442,0.295323708,gain,ns,0.000000358,0.00000237,0.15072398,0.880291483,pos,ns,0.000937431,0.000695222,1.3483894,0.178517488,pos,ns,0.748319234,0.0000255,0.0000239,1.068171977,0.286274031,pos,ns,0.053578376,Maml2,Maml2_Promoter,9,13297059,13297108,13297059,13297060,50,+,CGGTGCAATTTGCTGGAAGTTTGTAAGTTTGACCATCGTTTGTAAATTAC,Promoter (<=1kb),9,13297957,13709388,411432,1,Maml2-202,-849,Ccdc82-206;Ccdc82-201;Maml2-202,Ccdc82;Ccdc82;Maml2,50091;50080;-849,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,3,270118,ENSMUSG00000031925,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9591,cg18496079,-0.00000132,0.000000696,-1.898833379,0.058514725,loss,ns,0.000000178,0.00000118,0.150663382,0.880339247,pos,ns,-0.000196508,0.000346447,-0.567208019,0.570983356,neg,ns,0.243376551,-0.0000189,0.0000119,-1.588787897,0.113127623,neg,ns,0.013208178,Epc2,Epc2_fiveUTR,2,49451780,49451829,49451828,49451829,50,-,GGCTGTTCCTGTAAGGCGGGGAGACAATGAGTAAACTCTCCTTCCGAGCG,Promoter (<=1kb),2,49451486,49551948,100463,1,Epc2-201,294,Epc2-201,Epc2,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,14,227867,ENSMUSG00000069495,conserved gene and region,2,49451467,49451969,503,*,503,63,0.731610338,0.950850662,0.125248509,7.63E-55,CpGisland,TRUE,U1,Pr-A
11066,cg07639569,-0.0000355,0.00000772,-4.598509214,0.00000621,loss,ns,0.00000197,0.0000131,0.150605177,0.880385125,pos,ns,-0.000341675,0.003841812,-0.088935966,0.929190228,neg,ns,0.031895366,-0.000230943,0.00013212,-1.747987475,0.081456201,neg,ns,0.87503359,Gm12518,Gm12518_Intergenic_downstream,4,56483898,56483947,56483946,56483947,50,-,TTTATTAACCCAGCCTTAATTATATTCCATTTTGAGATTCAATAGTTTCG,Distal Intergenic,4,56387802,56388580,779,1,Gm12518-201,96145,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,100416258,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26717,cg02387898,-0.000000895,0.00000117,-0.766221119,0.444127792,loss,ns,-0.000000299,0.00000198,-0.150581117,0.88040409,neg,ns,-0.000566533,0.000581365,-0.974487375,0.330574394,neg,ns,0.48073079,0.0000317,0.00002,1.586783741,0.113581079,pos,ns,0.972200985,Camta1,Camta1_Exon,4,151830442,151830491,151830490,151830491,50,+,CTCTTTTGGTAAACTTGAACATTTCGGCAGACATTCAAGCAGCTTTTTCG,"Exon (Camta1-211/Camta1, exon 3 of 25)",4,150917322,151861669,944348,2,Camta1-211,31178,Camta1-211;Camta1-202;Camta1-201;Camta1-210;Camta1-209;Camta1-212;Camta1-206,Camta1;Camta1;Camta1;Camta1;Camta1;Camta1;Camta1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,22,100072,ENSMUSG00000014592,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23551,cg18059764,-0.00000454,0.00000542,-0.837670954,0.402860882,loss,ns,-0.00000138,0.0000092,-0.150505592,0.880463621,neg,ns,-0.007848046,0.002695428,-2.911613825,0.003856446,neg,ns,2.413812766,0.000242134,0.0000927,2.612139904,0.009435872,pos,ns,0.101827059,Sp8,Sp8_Promoter,12,118844037,118844086,118844037,118844038,50,+,CGTTTTAATTAACTTTTTGCTGTCCTGTAATGATCAAACTGGTCACCAGA,Promoter (2-3kb),12,118846329,118852576,6248,1,Sp8-201,-2243,Sp8-201;Sp8-202,Sp8;Sp8,0;-3500,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,27,29,320145,ENSMUSG00000048562,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
14099,cg18022224,0.0000292,0.00000344,8.498073414,8.22E-16,gain,yes,-0.000000878,0.00000584,-0.150347509,0.880588229,neg,ns,0.005833119,0.001711824,3.407545834,0.00074204,pos,ns,3.129572503,-0.0000805,0.0000589,-1.366848825,0.172663112,neg,ns,0.097113184,Hoxd12,Hoxd12_Promoter,2,74674961,74675010,74674961,74674962,50,+,CGGTGCTGAAATGACCGGCTTTGAAGAACCTGCAGGCAAAGTTTCGTCCA,Promoter (<=1kb),2,74675013,74677705,2693,1,Hoxd12-201,-3,Hoxd11-201;Hoxd12-201;Hoxd13-201,Hoxd11;Hoxd12;Hoxd13,0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,4,15432,ENSMUSG00000001823,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
6667,cg14977462,0.0000742,0.0000075,9.893951735,3.08E-20,gain,yes,-0.00000191,0.0000127,-0.150198294,0.880705849,neg,ns,0.020436057,0.003734463,5.472288637,9.17E-08,pos,ns,7.037401532,-0.000534357,0.000128428,-4.16075899,0.0000411,neg,ns,0.886554539,Uri1,Uri1_Intron,7,37970773,37970822,37970821,37970822,50,+,ATGAAAATTACGGTGTAAACAGTTCATAAAATCTCACAGCCCTGATGTCG,"Intron (Uri1-201/Uri1, intron 4 of 10)",7,37959992,38019542,59551,2,Uri1-201,48720,Uri1-201;Uri1-204;Uri1-206;Uri1-207;Uri1-202;Uri1-205,Uri1;Uri1;Uri1;Uri1;Uri1;Uri1,0;-1145;0;0;-4996;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,27,19777,ENSMUSG00000030421,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25309,cg00900734,-0.000000482,0.000000365,-1.320586954,0.187613225,loss,ns,-9.32E-08,0.00000062,-0.150189524,0.880712763,neg,ns,-0.00024278,0.000181763,-1.335692063,0.182629747,neg,ns,0.738428482,0.00000263,0.00000625,0.420856061,0.674151806,pos,ns,0.990047465,Dock1,Dock1_Exon,7,134756829,134756878,134756829,134756830,50,+,CGCCATTCGACACAAGCCGCTGAACATGTCATCCCGTTTTTCACCCAGGG,"Exon (Dock1-205/Dock1, exon 12 of 27)",7,134670654,134876943,206290,1,Dock1-205,86175,Dock1-205;Dock1-206;Dock1-201;Dock1-204;Dock1-203,Dock1;Dock1;Dock1;Dock1;Dock1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,5,330662,ENSMUSG00000058325,conserved gene and region,7,134756817,134756864,48,*,48,7,0.604166667,1.647058824,0.145833333,0.000000957,CpGisland,TRUE,U10,Tr-S
11986,cg15240455,0.0000494,0.0000111,4.448888057,0.0000121,gain,ns,-0.00000283,0.0000189,-0.15017854,0.880721421,neg,ns,0.011192685,0.005526587,2.025243552,0.04369899,pos,ns,1.359528598,-0.000412893,0.000190059,-2.17245019,0.030579141,neg,ns,0.179243643,Slc4a10,Slc4a10_fiveUTR,2,62046435,62046484,62046435,62046436,50,+,CGGCCCAGGGATCCAAGGCATTCAGTGCAAAACCTGGCCAGCAGCCCGAG,Promoter (<=1kb),2,62046462,62326730,280269,1,Slc4a10-202,0,Slc4a10-202;Slc4a10-206;Slc4a10-201;Slc4a10-203,Slc4a10;Slc4a10;Slc4a10;Slc4a10,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,12,94229,ENSMUSG00000026904,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27429,cg15713630,0.0000752,0.00000705,10.66536856,7.89E-23,gain,yes,-0.0000018,0.000012,-0.150068234,0.880808373,neg,ns,0.01114176,0.003508075,3.17603277,0.001643305,pos,ns,2.784281946,-0.00024264,0.000120642,-2.011229056,0.045166574,neg,ns,0.065109738,Lmx1a,Lmx1a_Intron,1,167802943,167802992,167802991,167802992,50,+,AATTAGAGCCTCCCCTGAGTTCTAATGCCCAATCCTGAGTAAACAAGCCG,"Intron (Lmx1a-202/Lmx1a, intron 4 of 8)",1,167689237,167848741,159505,1,Lmx1a-202,113706,Lmx1a-202;Lmx1a-201,Lmx1a;Lmx1a,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,6,110648,ENSMUSG00000026686,conserved gene and region,1,167802691,167803010,320,*,320,17,0.559375,0.679151061,0.053125,7.75E-09,CpGisland,TRUE,NA,NRS
22393,cg06489126,-0.00000124,0.00000207,-0.600214311,0.548801925,loss,ns,0.000000527,0.00000352,0.149754327,0.881055828,pos,ns,0.001220523,0.001030106,1.184851538,0.236983699,pos,ns,0.625281525,-0.0000877,0.0000354,-2.475444152,0.013841227,neg,ns,0.947415595,Arl15,Arl15_Intron,13,114004347,114004396,114004395,114004396,50,+,CTTAGCTATGTTTCTTGCCAAAAGTAATCCAGATGTGCATAATTTATCCG,"Intron (Arl15-201/Arl15, intron 4 of 4)",13,113794505,114157461,362957,1,Arl15-201,209842,Arl15-201;Arl15-203;Arl15-202,Arl15;Arl15;Arl15,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,6,218639,ENSMUSG00000042348,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4301,cg11121987,-0.000012,0.00000732,-1.646794832,0.100613525,loss,ns,0.00000186,0.0000124,0.149544842,0.881220972,pos,ns,-0.004767992,0.003641041,-1.309513461,0.191330174,neg,ns,0.718216534,0.0000874,0.000125215,0.698232816,0.48555503,pos,ns,0.869357157,Opcml,Opcml_Intron,9,28255816,28255865,28255816,28255817,50,-,CGTTAACATAGCTGTAATGAGAGGTAAATTTGTAATGCAGATGCCCGAGG,"Intron (Opcml-202/Opcml, intron 1 of 7)",9,27790947,28925410,1134464,1,Opcml-202,464869,Opcml-202,Opcml,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,12,330908,ENSMUSG00000062257,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13912,cg24986953,-0.00000992,0.00000415,-2.392957322,0.017308,loss,ns,-0.00000105,0.00000705,-0.14950757,0.881250355,neg,ns,-0.004101644,0.002064277,-1.986963793,0.047806347,neg,ns,1.320514437,0.000105822,0.000071,1.490654237,0.137069082,pos,ns,0.953448603,Ptk2,Ptk2_fiveUTR,15,73330939,73330988,73330939,73330940,50,-,CGCAGGTGACTGAGGCGGAATCCATAGCAGGCCACATGCTTTACTTTGTG,5' UTR,15,73205102,73423128,218027,2,Ptk2-208,92140,Ptk2-208;Ptk2-201;Ptk2-216;Ptk2-211;Ptk2-215;Ptk2-204;Ptk2-205;Ptk2-213;Ptk2-203,Ptk2;Ptk2;Ptk2;Ptk2;Ptk2;Ptk2;Ptk2;Ptk2;Ptk2,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,5,14083,ENSMUSG00000022607,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4365,cg09782624,0.0000538,0.0000134,4.013906775,0.000075,gain,ns,-0.0000034,0.0000228,-0.149446147,0.881298778,neg,ns,-0.004323803,0.006666837,-0.648553874,0.517106903,neg,ns,0.286419665,0.000135744,0.000229272,0.592064202,0.554239154,pos,ns,0.797775826,Tnik,Tnik_Exon,3,28539450,28539499,28539450,28539451,50,+,CGAGATATTAAAGGGCAAAATGTCTTGCTGACTGAAAATGCAGAAGTTAA,"Exon (Tnik-207/Tnik, exon 6 of 32)",3,28263214,28670585,407372,1,Tnik-207,276236,Tnik-207;Tnik-201;Tnik-212;Tnik-203;Tnik-205;Tnik-202;Tnik-206;Tnik-211;Tnik-214;Tnik-215;Tnik-210;Tnik-217,Tnik;Tnik;Tnik;Tnik;Tnik;Tnik;Tnik;Tnik;Tnik;Tnik;Tnik;Tnik,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,15,665113,ENSMUSG00000027692,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6867,cg26872866,-0.00000455,0.00000375,-1.211286554,0.226708158,loss,ns,-0.000000952,0.00000638,-0.149320969,0.881397464,neg,ns,0.004089222,0.001868058,2.189022748,0.02934073,pos,ns,1.532529087,-0.000199309,0.0000642,-3.10245265,0.002095926,neg,ns,0.93477367,Slc35b3,Slc35b3_Intergenic_upstream,13,39047541,39047590,39047589,39047590,50,-,CATTAAGGCACTCCCGGGTACATTTTATTGGTCCATTAATATAGGGCCCG,Distal Intergenic,13,38932136,38960875,28740,2,Slc35b3-201,-86715,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,9,11,108652,ENSMUSG00000021432,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
587,cg17757974,0.00000116,0.0000034,0.341702441,0.73280635,gain,ns,0.000000862,0.00000578,0.149069129,0.881596013,pos,ns,-0.00121604,0.001694052,-0.717828838,0.473403421,neg,ns,0.324768608,-0.00000833,0.0000583,-0.142990082,0.88639091,neg,ns,0.949231091,Rbfox1,Rbfox1_Intron,16,7106675,7106724,7106675,7106676,50,+,CGCATGGAACCAAGATGAATAATAATGAGGTTTTTAATAACTCCCTGCAT,"Intron (Rbfox1-205/Rbfox1, intron 4 of 11)",16,5885355,7353045,1467691,1,Rbfox1-205,1221320,Rbfox1-205;Rbfox1-201;Rbfox1-202;Rbfox1-203,Rbfox1;Rbfox1;Rbfox1;Rbfox1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,35,268859,ENSMUSG00000008658,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19129,cg07617635,0.0000746,0.00000648,11.51442103,8.84E-26,gain,yes,0.00000164,0.000011,0.148953153,0.881687449,pos,ns,0.008195496,0.003226294,2.540220067,0.011566058,pos,ns,1.936814621,-0.0000197,0.000110952,-0.177695415,0.85907824,neg,ns,0.092515518,Gm48049,Gm48049_Intergenic_downstream,13,98572868,98572917,98572916,98572917,50,+,AATGAAAGAGACACCCCCTGTTTTGACAGCTGGACCAGCGGCCTGGATCG,Distal Intergenic,13,98557761,98558031,271,1,Gm48049-201,15107,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,4,,NA,mapped to different genes,13,98572906,98573233,328,*,328,34,0.670731707,0.924403183,0.103658537,1.01E-26,CpGisland,TRUE,U3,Pr-B
11660,cg10481534,-0.0000015,0.00000153,-0.983801387,0.325980371,loss,ns,0.000000386,0.00000259,0.148932088,0.881704058,pos,ns,0.000160383,0.000759156,0.211264734,0.832819514,pos,ns,0.079449107,-0.00000413,0.0000261,-0.15830968,0.874315856,neg,ns,0.95343842,Parp6,Parp6_threeUTR,9,59649994,59650043,59650042,59650043,50,-,CGTGTGATCGGAACTCAGGTTTACACAAACTGAGGGGGCCCCAGCCCTCG,3' UTR,9,59617284,59650285,33002,1,Parp6-201,32710,Parp6-201;Parp6-202;Parp6-208;Parp6-203;Parp6-210;Parp6-205;Parp6-212,Parp6;Parp6;Parp6;Parp6;Parp6;Parp6;Parp6,0;0;0;0;0;0;1797,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,5,67287,ENSMUSG00000025237,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4964,cg14204791,-0.00000417,0.00000233,-1.788889391,0.074608897,loss,ns,0.000000589,0.00000396,0.148786541,0.881818811,pos,ns,0.000469243,0.001160376,0.404388698,0.686205768,pos,ns,0.163545636,0.0000118,0.0000399,0.295040463,0.768160466,pos,ns,0.083927432,Pknox1,Pknox1_fiveUTR,17,31564863,31564912,31564911,31564912,50,-,TCAGTGTGATGAAGATTGGCACCCAGGTAAGCTGTCACTCAACCGCTCCG,Promoter (<=1kb),17,31564865,31605166,40302,1,Pknox1-208,0,Pknox1-201;Pknox1-206;Pknox1-212;Pknox1-209;Pknox1-202;Pknox1-208,Pknox1;Pknox1;Pknox1;Pknox1;Pknox1;Pknox1,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,8,8,18771,ENSMUSG00000006705,conserved gene but different region,17,31564906,31565621,716,*,716,118,0.791899441,1.06992883,0.164804469,2.89E-119,CpGisland,TRUE,U1,Pr-A
9365,cg11664765,-0.000000968,0.00000177,-0.546057516,0.585419151,loss,ns,-0.000000448,0.00000301,-0.148782896,0.881821685,neg,ns,-0.001707763,0.000882122,-1.935972475,0.053779982,neg,ns,1.269379346,0.0000476,0.0000303,1.570647169,0.117284712,pos,ns,0.975912968,Tenm3,Tenm3_fiveUTR,8,48417052,48417101,48417100,48417101,50,-,CAGCTGGACGGACTCGGGTGTGGTTTGCAGCTCGGCGGGCAAAGCAGCCG,5' UTR,8,48227682,48674690,447009,2,Tenm3-201,257589,Tenm3-201;Tenm3-206;Tenm3-204;Tenm3-208;Tenm3-203;Tenm3-202,Tenm3;Tenm3;Tenm3;Tenm3;Tenm3;Tenm3,0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,7,39,23965,ENSMUSG00000031561,conserved gene but different region,8,48417060,48417110,51,*,51,7,0.745098039,1.0625,0.137254902,0.00000149,CpGisland,TRUE,U15,NS
2045,cg04561747,-0.000000866,0.000000386,-2.241203646,0.02572045,loss,ns,-9.75E-08,0.000000656,-0.148558837,0.881998345,neg,ns,0.000196407,0.000192218,1.021792075,0.307676039,pos,ns,0.511906325,-0.0000133,0.00000661,-2.014279521,0.044843626,neg,ns,0.010333794,Cited2,Cited2_Promoter,10,17722311,17722360,17722311,17722312,50,-,CGAGGATCGCTGAGTTTGTTTACAGAGCAGAGACGCCTCAGCTCGGATGC,Promoter (<=1kb),10,17723218,17725674,2457,1,Cited2-201,-907,Cited2-201;Cited2-203;Cited2-202,Cited2;Cited2;Cited2,0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,4,11,17684,ENSMUSG00000039910,conserved gene and region,10,17722311,17722562,252,*,252,22,0.638888889,0.855555556,0.087301587,9.52E-16,CpGisland,TRUE,U1,Pr-A
9459,cg13604683,-0.0000613,0.0000107,-5.730028055,2.38E-08,loss,yes,0.0000027,0.0000182,0.148468266,0.882069757,pos,ns,-0.008826414,0.005320256,-1.659020648,0.098122964,neg,ns,1.008229344,0.000200415,0.000182963,1.095383086,0.274199125,pos,ns,0.888001837,Tenm3,Tenm3_Intron,8,48800259,48800308,48800307,48800308,50,-,CAAGCTGTAGACACTTAAAAATACTGTTTAATTTTCTTTAATCCATTTCG,"Intron (Tenm3-207/Tenm3, intron 1 of 2)",8,48646261,48843951,197691,2,Tenm3-207,43643,Tenm3-207,Tenm3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,39,23965,ENSMUSG00000031561,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21821,cg09844922,-0.000000903,0.00000325,-0.278130835,0.78109734,loss,ns,0.000000819,0.00000552,0.148463242,0.882073719,pos,ns,0.001031291,0.001615798,0.638254757,0.523779065,pos,ns,0.280851864,-0.0000863,0.0000556,-1.552952079,0.121454868,neg,ns,0.931964807,Lmo1,Lmo1_Exon,7,109208266,109208315,109208266,109208267,50,-,CGCCATATGTGCAGTAATTAGCAAACCACGGGCACATTTTATAAATCATA,"Exon (Gm45024-201/Gm45024-201, exon 3 of 3)",7,109138675,109175207,36533,2,Lmo1-202,-33108,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,66,109594,ENSMUSG00000036111,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5324,cg09827139,0.0000242,0.00000471,5.144688993,0.000000476,gain,yes,-0.00000119,0.000008,-0.148310509,0.882194146,neg,ns,0.002634321,0.002344358,1.123685398,0.262015927,pos,ns,0.581672309,-0.0000778,0.0000806,-0.965325499,0.335134249,neg,ns,0.10294345,Nkx1-1,Nkx1-1_Promoter,5,33435517,33435566,33435517,33435518,50,+,CGGTCCTTTGCAATTACCGCGGGCAATGATCCTTTGGAAGCAGAAATTAA,Promoter (1-2kb),5,33430734,33433976,3243,2,Nkx1-1-201,-1541,Nkx1-1-201,Nkx1-1,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,8,13,672284,ENSMUSG00000029112,conserved gene and region,5,33435207,33435618,412,*,412,29,0.580097087,0.839162804,0.07038835,6.57E-18,CpGisland,TRUE,U13,Hc-P
4748,cg19054310,-0.0000093,0.00000418,-2.222993694,0.026937131,loss,ns,-0.00000105,0.00000711,-0.148296313,0.882205339,neg,ns,-0.001592329,0.002081664,-0.76493078,0.444894681,neg,ns,0.351742787,0.0000039,0.0000716,0.054492146,0.956578167,pos,ns,0.944996715,Mecom,Mecom_Intron,3,30416691,30416740,30416739,30416740,50,-,TTATCCATTCAACAGACAATACCGCTTTCTCTGCATTAATCTAGGAGGCG,"Intron (Mecom-212/Mecom, intron 1 of 15)",3,29951299,30509733,558435,2,Mecom-212,92993,Mecom-212;Mecom-213;Mecom-207;Mecom-208;Mecom-211;Mecom-209,Mecom;Mecom;Mecom;Mecom;Mecom;Mecom,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,80,14013,ENSMUSG00000027684,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5690,cg08714699,0.0000178,0.0000072,2.46837157,0.014112246,gain,ns,-0.00000181,0.0000122,-0.148256022,0.882237109,neg,ns,0.016048068,0.003583834,4.477904635,0.0000106,pos,ns,4.974360098,-0.00035821,0.000123248,-2.906421654,0.003919273,neg,ns,0.354057135,Ldb3,Ldb3_Exon,14,34561849,34561898,34561849,34561850,50,+,CGTGGGCTGTTACGTTCCGTTTCAAACCTTTCCCTGTGGCACAGAGAGAG,"Exon (Ldb3-207/Ldb3, exon 10 of 10)",14,34526603,34588664,62062,2,Ldb3-201,26766,Ldb3-201;Ldb3-205;Ldb3-202;Ldb3-204;Ldb3-208;Ldb3-207;Ldb3-203,Ldb3;Ldb3;Ldb3;Ldb3;Ldb3;Ldb3;Ldb3,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,24131,ENSMUSG00000021798,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4694,cg15425233,0.0000252,0.00000372,6.769645643,6.47E-11,gain,yes,0.000000938,0.00000633,0.148206699,0.882276,pos,ns,0.001542098,0.001853874,0.831824559,0.40614827,pos,ns,0.391315392,0.0000422,0.0000638,0.661664284,0.508677909,pos,ns,0.101855632,Garem2,Garem2_Exon,5,30114400,30114449,30114448,30114449,50,+,AAGCTGGTTAGCATCATCTCCAAGACGGTGGTGCTGGGGCTGGCGCTGCG,"Exon (Garem2-201/Garem2, exon 4 of 6)",5,30105161,30118378,13218,1,Garem2-201,9239,Garem2-201;Hadha-205;Hadha-201,Garem2;Hadha;Hadha,0;40713;40527,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,242915,ENSMUSG00000044576,conserved gene and region,5,30114425,30114938,514,*,514,80,0.750972763,1.106328024,0.155642023,1.63E-78,CpGisland,TRUE,U3,Pr-B
13606,cg05194810,0.0000434,0.00000381,11.38428803,2.54E-25,gain,yes,-0.000000958,0.00000647,-0.148040121,0.88240735,neg,ns,0.004896372,0.001895479,2.583185056,0.010247136,pos,ns,1.989397507,-0.0000301,0.0000652,-0.462458137,0.644077239,neg,ns,0.093837022,Dlx1,Dlx1_fiveUTR,2,71529985,71530034,71529985,71529986,50,+,CGAGAAGAGATGACCATGACCACCATGCCAGAAAGTCTCAACAGCCCCGT,5' UTR,2,71528113,71533980,5868,1,Dlx1-201,1872,Dlx1-201;Dlx1-202;Dlx1-205;Dlx1-204;Dlx1-203;Dlx1-206;Metap1d-201;Metap1d-205,Dlx1;Dlx1;Dlx1;Dlx1;Dlx1;Dlx1;Metap1d;Metap1d,0;0;0;0;0;-746;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,12,36,13390,ENSMUSG00000041911,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
25256,cg22543942,0.000000711,0.00000153,0.464834104,0.642376584,gain,ns,0.000000384,0.0000026,0.147789099,0.88260529,pos,ns,0.002142448,0.000761082,2.815002698,0.005189842,pos,ns,2.284845857,-0.0000195,0.0000262,-0.743821739,0.457547723,neg,ns,0.043484329,Cxxc4,Cxxc4_Exon,3,134240364,134240413,134240412,134240413,50,-,TTCCGCTATCCCGGCTTTAGGGGGCATCTCATTACCTCCAGGGGTCATCG,"Exon (Cxxc4-203/Cxxc4, exon 3 of 4)",3,134236484,134259620,23137,1,Cxxc4-204,3880,Cxxc4-204;Cxxc4-203;Cxxc4-202;Cxxc4-201;Cxxc4-205,Cxxc4;Cxxc4;Cxxc4;Cxxc4;Cxxc4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,18,20,319478,ENSMUSG00000044365,mapped to different genes,3,134240265,134240649,385,*,385,21,0.587012987,0.63362069,0.054545455,5.57E-11,CpGisland,TRUE,U3,Pr-B
14090,cg27025406,0.0000626,0.0000166,3.761189268,0.000202144,gain,ns,0.00000417,0.0000283,0.147749256,0.882636709,pos,ns,0.02192325,0.008277251,2.648615004,0.008496073,pos,ns,2.070781764,-0.000824234,0.000284654,-2.895564955,0.00405367,neg,ns,0.437820158,Gm27233,Gm27233_Intergenic_upstream,9,74656634,74656683,74656682,74656683,50,-,AATCAATAACCCCAATCGATGGGAAAATATTTTTAGTCTCTAACTGAACG,Distal Intergenic,9,74709262,74709568,307,1,Gm27233-201,-52628,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,4,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
234,cg10201667,0.000000384,0.000000492,0.779829391,0.436086276,gain,ns,-0.000000124,0.000000836,-0.147735838,0.88264729,neg,ns,-0.0000728,0.000244906,-0.297189551,0.76652084,neg,ns,0.115476033,0.00000273,0.00000842,0.323759586,0.746338368,pos,ns,0.98669218,Gm21992,Gm21992_threeUTR,19,4801740,4801789,4801788,4801789,50,-,GAAAGCTGCGACTCTGATAAACGGCGGTAATCAGAGAGCTCGGCTAAACG,3' UTR,19,4742913,4811612,68700,2,Gm21992-203,9823,Gm21992-203;Gm21992-206;Gm21992-204;Gm21992-201;Gm21992-205;Gm21992-202;Rbm14-201;Rbm14-202;Rbm14-203,Gm21992;Gm21992;Gm21992;Gm21992;Gm21992;Gm21992;Rbm14;Rbm14;Rbm14,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,21,48,102902673,ENSMUSG00000096370,mapped to different genes,19,4801605,4801812,208,*,208,24,0.586538462,1.371428571,0.115384615,3.42E-20,CpGisland,TRUE,U10,Tr-S
5365,cg26618239,0.0000231,0.0000053,4.365789311,0.0000173,gain,ns,0.00000133,0.000009,0.14771959,0.882660102,pos,ns,0.005190279,0.002637311,1.968019274,0.049956814,pos,ns,1.301405264,-0.0000518,0.0000907,-0.570622052,0.568669243,neg,ns,0.126234859,Lmx1b,Lmx1b_Intron,2,33616837,33616886,33616885,33616886,50,-,AACAGAGATAAAATGATTAAAAACTGCCAAGCGGGCCTGGCAATCACTCG,"Intron (Lmx1b-201/Lmx1b, intron 2 of 7)",2,33560965,33640608,79644,2,Lmx1b-201,23722,Lmx1b-201;Lmx1b-203;Lmx1b-204;Lmx1b-202,Lmx1b;Lmx1b;Lmx1b;Lmx1b,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,26,16917,ENSMUSG00000038765,conserved gene and region,2,33616825,33617025,201,*,201,14,0.606965174,0.75624832,0.069651741,7.35E-09,CpGisland,TRUE,NA,NRS
21488,cg17961335,-0.00000362,0.00000627,-0.577486625,0.56402995,loss,ns,0.00000157,0.0000107,0.147595221,0.882758176,pos,ns,-0.004103346,0.003122581,-1.314087724,0.189788221,neg,ns,0.721730745,0.000324142,0.000107385,3.018497284,0.002751166,pos,ns,0.87716076,Bcl11b,Bcl11b_Intron,12,107952421,107952470,107952421,107952422,50,-,CGGCTGGCCGTGAAAAGAATTCTAAATAAAACACAAACATGGAATTTGGC,"Intron (Bcl11b-201/Bcl11b, intron 3 of 3)",12,107910403,108003602,93200,2,Bcl11b-201,51132,Bcl11b-201;Bcl11b-202;Bcl11b-203,Bcl11b;Bcl11b;Bcl11b,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,39,58208,ENSMUSG00000048251,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23685,cg05570491,0.0000411,0.00000933,4.406066902,0.0000145,gain,ns,-0.00000234,0.0000159,-0.147538224,0.882803123,neg,ns,0.007848256,0.004645283,1.689510921,0.092126952,pos,ns,1.035613296,-0.00019387,0.000159751,-1.213578631,0.225832486,neg,ns,0.099072939,Hivep3,Hivep3_Exon,4,119814435,119814484,119814435,119814436,50,-,CGTGATTTATATTTATTCAGAGGAATAACAGAGGGTGGATCTGTTCCCGG,"Exon (Hivep3-207/Hivep3, exon 1 of 2)",4,119733784,119814748,80965,1,Hivep3-208,80651,Hivep3-208;Hivep3-206;Hivep3-203;Hivep3-204;Hivep3-207;Hivep3-205;Hivep3-202,Hivep3;Hivep3;Hivep3;Hivep3;Hivep3;Hivep3;Hivep3,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,8,16656,ENSMUSG00000028634,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
248,cg05311959,-0.00000364,0.00000256,-1.421358131,0.156217854,loss,ns,-0.000000641,0.00000435,-0.14753658,0.882804419,neg,ns,0.003582668,0.001273102,2.814125496,0.005203666,pos,ns,2.283690587,-0.0000152,0.0000438,-0.347068825,0.728775107,neg,ns,0.939616191,Gm21992,Gm21992_Exon,19,4803883,4803932,4803931,4803932,50,+,AGGCCAGGCCCCTTCTTCTGACCCTTGGTGGAGAGTTCCACGTTGATGCG,"Exon (Rbm14-201/Rbm14, exon 2 of 3)",19,4742913,4811612,68700,2,Gm21992-203,7680,Gm21992-203;Gm21992-206;Gm21992-204;Gm21992-201;Gm21992-205;Gm21992-202;Rbm14-201;Rbm14-202;Rbm14-203,Gm21992;Gm21992;Gm21992;Gm21992;Gm21992;Gm21992;Rbm14;Rbm14;Rbm14,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,27,48,102902673,ENSMUSG00000096370,mapped to different genes,19,4803923,4804011,89,*,89,8,0.561797753,1.146537842,0.08988764,0.00000491,CpGisland,TRUE,U10,Tr-S
3489,cg05701280,0.0000134,0.00000537,2.501793194,0.012871747,gain,ns,-0.00000135,0.00000913,-0.147498507,0.882834443,neg,ns,0.001724862,0.002674232,0.64499336,0.519408528,pos,ns,0.284490924,-0.000165635,0.000092,-1.801028963,0.072670054,neg,ns,0.786676445,Bcl11a,Bcl11a_Exon,11,24164847,24164896,24164847,24164848,50,-,CGGGCAGGCCCAGCTCAAAAGAGGGCAGACGCAGCGACACTTGTGAGTAC,"Exon (Bcl11a-201/Bcl11a, exon 4 of 5)",11,24078056,24173194,95139,1,Bcl11a-201,86791,Bcl11a-201;Bcl11a-203;Bcl11a-202;Bcl11a-204;Bcl11a-206,Bcl11a;Bcl11a;Bcl11a;Bcl11a;Bcl11a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,51,98,14025,ENSMUSG00000000861,conserved gene but different region,11,24164541,24164882,342,*,342,25,0.628654971,0.74025974,0.073099415,6.44E-16,CpGisland,TRUE,NA,NRS
966,cg19579860,-0.00000171,0.0000012,-1.417535244,0.157330804,loss,ns,-0.000000301,0.00000204,-0.147380557,0.882927457,neg,ns,0.000509742,0.000598783,0.85129651,0.39526177,pos,ns,0.403115189,-0.0000319,0.0000206,-1.551403228,0.121825359,neg,ns,0.048098842,Rock1,Rock1_Exon,18,10181264,10181313,10181312,10181313,50,+,CAGCAGGTTGTCCATTTTTTCAAATCGAGTCTCAAAACTGTCCCCAGTCG,Promoter (<=1kb),18,10064401,10182045,117645,2,Rock1-201,732,Rock1-201;Rock1-205,Rock1;Rock1,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,19877,ENSMUSG00000024290,conserved gene and region,18,10181249,10181454,206,*,206,16,0.582524272,0.917850181,0.077669903,8.92E-11,CpGisland,TRUE,U1,Pr-A
13260,cg12396418,-0.0000619,0.0000175,-3.534166408,0.000471383,loss,ns,0.00000438,0.0000298,0.147376014,0.88293104,pos,ns,-0.010203758,0.008716122,-1.17067627,0.24262805,neg,ns,0.615058992,-0.000358762,0.000299747,-1.19688289,0.232266699,neg,ns,0.104151428,Eif5a,Eif5a_fiveUTR,11,69921304,69921353,69921304,69921305,50,-,CGCCGACTCCCCACTGACCAACCAAGCAGCCCTATGACAGCCGCGCAAGC,Promoter (<=1kb),11,69916720,69921386,4667,2,Eif5a-201,33,Eif5a-213;Eif5a-207;Eif5a-208;Eif5a-209;Eif5a-201;Eif5a-202;Eif5a-210;Eif5a-203;Eif5a-206;Eif5a-205;Eif5a-204;Eif5a-212;Eif5a-211;Gps2-202;Gps2-203;Gps2-201;Gps2-205,Eif5a;Eif5a;Eif5a;Eif5a;Eif5a;Eif5a;Eif5a;Eif5a;Eif5a;Eif5a;Eif5a;Eif5a;Eif5a;Gps2;Gps2;Gps2;Gps2,0;0;0;0;0;0;0;0;0;0;0;-3000;0;7416;7254;7112;5263,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,5,276770,ENSMUSG00000078812,conserved gene and region,11,69920805,69921519,715,*,715,93,0.721678322,1.102315866,0.13006993,1.81E-82,CpGisland,TRUE,U1,Pr-A
15080,cg26234638,0.00000828,0.0000015,5.508613449,7.61E-08,gain,yes,0.000000376,0.00000255,0.147174746,0.883089763,pos,ns,0.00178856,0.000747909,2.391413843,0.017379584,pos,ns,1.759960635,-0.00000862,0.0000257,-0.335254869,0.737659589,neg,ns,0.069145762,Zfp827,Zfp827_Promoter,8,79028385,79028434,79028433,79028434,50,+,GATCCGTTTCCATTGAAGAATATTACGCTCGGGGACAAGCCAGGTGCACG,Promoter (<=1kb),8,79028437,79071837,43401,1,Zfp827-201,-3,Zfp827-201;Zfp827-202;Zfp827-203;Zfp827-209,Zfp827;Zfp827;Zfp827;Zfp827,0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,10,28,622675,ENSMUSG00000071064,conserved gene but different region,8,79028199,79028434,236,*,236,23,0.588983051,1.130833333,0.097457627,1.44E-17,CpGisland,TRUE,U1,Pr-A
20199,cg05706365,0.0000326,0.00000371,8.783903977,1.10E-16,gain,yes,-0.000000927,0.0000063,-0.147112094,0.883139172,neg,ns,0.003262258,0.001846124,1.767085241,0.078197839,pos,ns,1.10680525,-0.0000687,0.0000635,-1.082455199,0.279891571,neg,ns,0.071824232,Unc79,Unc79_fiveUTR,12,102949115,102949164,102949163,102949164,50,-,ATGGTCGGGGACTCCGGCGCTTTAAGAGGCTTTTCTCTGGGAAACACCCG,Promoter (<=1kb),12,102948859,103184001,235143,1,Unc79-202,256,Unc79-202;Unc79-208,Unc79;Unc79,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,12,24,217843,ENSMUSG00000021198,conserved gene and region,12,102948810,102949512,703,*,703,59,0.644381223,0.809149434,0.083926031,2.91E-40,CpGisland,TRUE,NA,NRS
9809,cg16181889,0.0000294,0.00000232,12.64818358,7.53E-30,gain,yes,-0.00000058,0.00000395,-0.147062045,0.883178643,neg,ns,0.002804669,0.001156261,2.425635745,0.015852232,pos,ns,1.799909568,0.000076,0.0000398,1.91052498,0.056988037,pos,ns,0.053342081,Sim1,Sim1_Intron,10,50902430,50902479,50902478,50902479,50,-,TTTCCTCCTCATTTTAAACAGACAATCAAAGGATTTGCGAATTTTCTGCG,"Intron (Sim1-201/Sim1, intron 1 of 10)",10,50895651,50989152,93502,1,Sim1-201,6779,Sim1-202;Sim1-201,Sim1;Sim1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,8,20464,ENSMUSG00000019913,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
6862,cg11551674,-0.00000459,0.00000474,-0.968167972,0.333715217,loss,ns,-0.00000118,0.00000805,-0.146940515,0.883274487,neg,ns,-0.000985511,0.002358784,-0.417804542,0.67637927,neg,ns,0.169809711,-0.0000418,0.0000811,-0.51576579,0.606385641,neg,ns,0.869673878,Slc35b3,Slc35b3_Intergenic_upstream,13,38976800,38976849,38976848,38976849,50,+,TTTCTTTCACACACAAGGTTAATTCACTTCTTGATCACATTATTTCCTCG,Distal Intergenic,13,38932136,38960875,28740,2,Slc35b3-201,-15925,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,9,11,108652,ENSMUSG00000021432,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3805,cg12694663,-0.0000066,0.00000331,-1.997364635,0.046659316,loss,ns,0.000000823,0.00000562,0.146621482,0.8835261,pos,ns,-0.000219208,0.001645155,-0.133244545,0.894086436,neg,ns,0.048620494,-0.0000585,0.0000566,-1.034275369,0.301813608,neg,ns,0.916721168,Celf4,Celf4_threeUTR,18,25481781,25481830,25481829,25481830,50,+,TTTTCTCCACTCTCATGTGATTACGTGAACTTTATTCCTAGCTCAGCGCG,3' UTR,18,25477632,25753983,276352,2,Celf4-202,272153,Celf4-202;Celf4-201;Celf4-203;Celf4-207;Celf4-206;Celf4-208;Celf4-204,Celf4;Celf4;Celf4;Celf4;Celf4;Celf4;Celf4,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,59,108013,ENSMUSG00000024268,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18176,cg27357573,-0.00000109,0.00000198,-0.553459003,0.580348087,loss,ns,0.000000492,0.00000336,0.146617746,0.883529046,pos,ns,0.000778784,0.000983845,0.79157195,0.429215553,pos,ns,0.367324549,-0.0000472,0.0000338,-1.394405122,0.164193796,neg,ns,0.958446009,Ttc17,Ttc17_fiveUTR,2,94364261,94364310,94364309,94364310,50,+,CTTACTTTTCGTGCATGGTCATCTGGCATTTTGGCTTTCAGATCCATGCG,5' UTR,2,94300767,94366597,65831,2,Ttc17-201,2287,Ttc17-201;Ttc17-203;Ttc17-204;Ttc17-202;Ttc17-205,Ttc17;Ttc17;Ttc17;Ttc17;Ttc17,0;0;0;0;-1444,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,5,74569,ENSMUSG00000027194,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26079,cg00010926,-0.00000335,0.0000093,-0.360103741,0.71901477,loss,ns,0.00000232,0.0000158,0.146593657,0.883548045,pos,ns,-0.003732983,0.004626988,-0.806784699,0.420409063,neg,ns,0.37632793,0.000181572,0.000159122,1.141090276,0.254713084,pos,ns,0.87775415,Pak3,Pak3_Exon,X,143712313,143712362,143712313,143712314,50,-,CGCTTCAAGTCAATCAGAGGGAAAAATGGTATGAGTGATATAAATTATCA,"Exon (Pak3-207/Pak3, exon 5 of 13)",20,143518591,143797792,279202,1,Pak3-201,193722,Pak3-201;Pak3-207;Pak3-205;Pak3-209;Pak3-208;Pak3-204;Pak3-202;Pak3-203;Pak3-210,Pak3;Pak3;Pak3;Pak3;Pak3;Pak3;Pak3;Pak3;Pak3,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,9,18481,ENSMUSG00000031284,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23977,cg11015311,-0.000047,0.0000078,-6.023155142,4.84E-09,loss,yes,-0.00000194,0.0000132,-0.146513211,0.883611493,neg,ns,-0.013514501,0.003880092,-3.483036033,0.000567076,neg,ns,3.246358752,0.000315592,0.000133436,2.365114745,0.018640006,pos,ns,0.868013257,Dock9,Dock9_threeUTR,14,121591865,121591914,121591913,121591914,50,-,TGCATCATTCCTGTTCTGTTACGGGAAACAGGCAATGTCTGAGACTTTCG,3' UTR,14,121542046,121738861,196816,2,Dock9-208,146947,Dock9-208;Dock9-203;Dock9-201;Dock9-206;Dock9-209;Dock9-212;Dock9-202;Dock9-207;Dock9-205,Dock9;Dock9;Dock9;Dock9;Dock9;Dock9;Dock9;Dock9;Dock9,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,4,105445,ENSMUSG00000025558,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20912,cg20556027,0.0000274,0.0000142,1.929906247,0.05453064,gain,ns,-0.00000353,0.0000241,-0.146421238,0.883684032,neg,ns,0.049350827,0.00705871,6.991479933,1.68E-11,pos,yes,10.77582702,-0.001365275,0.000242748,-5.624238633,4.16E-08,neg,yes,0.812889565,Relch,Relch_Exon,1,105686948,105686997,105686996,105686997,50,-,GTCCTGGAGTTTGAACTACGGAAAGCCAAGGAGACCATTCAGGCCCTCCG,"Exon (Relch-208/Relch, exon 4 of 5)",1,105663861,105687141,23281,1,Relch-208,23087,Relch-208;Relch-205;Relch-201;Relch-202;Relch-210;Relch-212,Relch;Relch;Relch;Relch;Relch;Relch,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,6,227446,ENSMUSG00000026319,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3083,cg11816942,-0.00000405,0.00000153,-2.650050735,0.008460864,loss,ns,-0.00000038,0.00000259,-0.146413462,0.883690166,neg,ns,0.000167008,0.000760051,0.219732756,0.826223912,pos,ns,0.08290224,-0.00000463,0.0000261,-0.176991738,0.85963046,neg,ns,0.953144027,Lrmda,Lrmda_Intron,14,22609721,22609770,22609769,22609770,50,-,TAACCTTTTCCACAACTCCAAAATGCTAACCAATAAGGGAGTCATACACG,"Intron (Lrmda-201/Lrmda, intron 5 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,590009,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206,Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25799,cg24707416,0.0000254,0.00000424,5.989845445,5.82E-09,gain,yes,-0.00000105,0.0000072,-0.146284872,0.883791587,neg,ns,0.002526384,0.002109555,1.197591286,0.231991068,pos,ns,0.634528736,0.0000188,0.0000725,0.258564647,0.796142753,pos,ns,0.07485296,Uncx,Uncx_Intergenic_downstream,5,139549025,139549074,139549073,139549074,50,+,ATCAGCCTATTGATCATGTGTCGCCTGTAATAGGACAGGCGCCGCCAACG,Distal Intergenic,5,139543898,139545268,1371,1,Uncx-202,5127,Uncx-201;Uncx-202,Uncx;Uncx,0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,59,88,22255,ENSMUSG00000029546,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
14278,cg05366673,-0.0000186,0.00000716,-2.60247118,0.009700134,loss,ns,0.00000178,0.0000122,0.146129126,0.883914431,pos,ns,-0.004715396,0.003565348,-1.322562594,0.186955747,neg,ns,0.72826118,0.0000763,0.000122612,0.622072094,0.534351712,pos,ns,0.750940032,Smg6,Smg6_Intron,11,75033989,75034038,75034037,75034038,50,-,CTAATTAGAAATACATAACATCCGGCCACATGGCAGCCTTCTCCCGGCCG,"Intron (Smg6-201/Smg6, intron 10 of 18)",11,74925823,75164448,238626,1,Smg6-201,108166,Smg6-201;Smg6-202;Smg6-204,Smg6;Smg6;Smg6,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,34,103677,ENSMUSG00000038290,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23701,cg09382811,-0.0000128,0.00000874,-1.465041896,0.143922928,loss,ns,0.00000217,0.0000149,0.146017584,0.88400241,pos,ns,-0.002847088,0.004352267,-0.654162192,0.513492307,neg,ns,0.289466058,0.0000418,0.000149674,0.279381251,0.780138561,pos,ns,0.850944199,Mga,Mga_Exon,2,119941227,119941276,119941227,119941228,50,+,CGACCCTCTCCTGGTGGTGTGTTCACACAGTTTGTGATGAGTAAAGTTGG,Promoter (<=1kb),2,119941251,119947202,5952,1,Mga-209,0,Mga-201;Mga-202;Mga-203;Mga-204;Mga-215;Mga-208;Mga-214;Mga-213;Mga-209;Mga-212,Mga;Mga;Mga;Mga;Mga;Mga;Mga;Mga;Mga;Mga,0;0;0;0;0;0;0;0;0;-479,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,9,29808,ENSMUSG00000033943,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26802,cg22369908,0.0000437,0.00000406,10.77228896,3.39E-23,gain,yes,-0.00000101,0.00000689,-0.145871127,0.88411793,neg,ns,0.004211305,0.002019573,2.085245048,0.037864856,pos,ns,1.421763694,0.00000694,0.0000695,0.099918165,0.92047388,pos,ns,0.046830512,Sox12,Sox12_threeUTR,2,152396743,152396792,152396791,152396792,50,-,TGACGGTGGGCTCAGTAGGTGAAAACCAGGTCTGCGATGCTAGACGGGCG,3' UTR,2,152393611,152398063,4453,2,Sox12-202,1271,Sox12-202;Sox12-201,Sox12;Sox12,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,7,7,20667,ENSMUSG00000051817,mapped to different genes,2,152396729,152396923,195,*,195,21,0.666666667,0.980603448,0.107692308,4.93E-17,CpGisland,TRUE,U1,Pr-A
1752,cg25669297,0.00000319,0.00000142,2.251226465,0.025071384,gain,ns,-0.000000352,0.00000241,-0.145864378,0.884123254,neg,ns,0.001754218,0.00070602,2.4846571,0.01349512,pos,ns,1.86982325,-0.0000531,0.0000243,-2.188764121,0.029359718,neg,ns,0.010969886,Kctd1,Kctd1_fiveUTR,18,15063543,15063592,15063543,15063544,50,+,CGCTGCCAGGCATTCTCGCCATATTGCCGTCTCTCTGCCAGTCCTCGGGC,5' UTR,18,14968685,15151446,182762,2,Kctd1-201,87854,Kctd1-201;Kctd1-202;Kctd1-206;Kctd1-205,Kctd1;Kctd1;Kctd1;Kctd1,0;0;0;-1654,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,9,24,106931,ENSMUSG00000036225,conserved gene but different region,18,15063315,15063752,438,*,438,43,0.673515982,0.892352885,0.098173516,1.42E-32,CpGisland,TRUE,U3,Pr-B
9259,cg23867085,-0.00000445,0.00000394,-1.130165022,0.259280362,loss,ns,0.000000977,0.0000067,0.145832896,0.884148086,pos,ns,0.003087101,0.001961724,1.573667926,0.116584239,pos,ns,0.933360157,-0.000125866,0.0000675,-1.865685812,0.063029703,neg,ns,0.923863995,Foxp4,Foxp4_Intron,17,47872392,47872441,47872440,47872441,50,+,TTCATTACCAATTTTAATTTGCCTCTAATTAAATCCTGTGTATTTTTCCG,"Intron (Foxp4-204/Foxp4, intron 13 of 16)",17,47867133,47924645,57513,2,Foxp4-204,52204,Foxp4-204;Foxp4-203;Foxp4-201;Foxp4-202,Foxp4;Foxp4;Foxp4;Foxp4,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,25,74123,ENSMUSG00000023991,conserved gene and region,17,47872440,47872721,282,*,282,26,0.563829787,1.163809524,0.092198582,3.73E-19,CpGisland,TRUE,U10,Tr-S
26943,cg27192328,-0.0000404,0.00000728,-5.547273634,6.23E-08,loss,yes,0.0000018,0.0000124,0.145782841,0.884187569,pos,ns,-0.000519867,0.003625409,-0.143395287,0.886071169,neg,ns,0.052531394,-0.000206419,0.000124678,-1.655623283,0.098810035,neg,ns,0.878715958,Sat1,Sat1_threeUTR,X,155215164,155215213,155215212,155215213,50,-,TAGTTACCTCCCCGCCCATCCATGTACACGGAAGGGCCATGTACATGGCG,3' UTR,20,155213132,155216449,3318,2,Sat1-201,1236,Sat1-201;Sat1-207;Sat1-204;Sat1-205;Sat1-206;Sat1-202;Sat1-203,Sat1;Sat1;Sat1;Sat1;Sat1;Sat1;Sat1,0;0;-1105;-260;0;0;1114,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,3,20229,ENSMUSG00000025283,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
3478,cg10147375,0.000000702,0.00000153,0.457740805,0.647459329,gain,ns,-0.00000038,0.00000261,-0.145767487,0.88419968,neg,ns,0.000644031,0.000763773,0.843223535,0.399753587,pos,ns,0.398207631,-0.0000498,0.0000263,-1.896805536,0.058782963,neg,ns,0.963183479,Bcl11a,Bcl11a_Exon,11,24163661,24163710,24163661,24163662,50,+,CGGCCCAGCCCTATGCAAAGGTTACTGCAACCATTCCAGCCAGGTAGCAA,"Exon (Bcl11a-201/Bcl11a, exon 4 of 5)",11,24078056,24173194,95139,1,Bcl11a-201,85605,Bcl11a-201;Bcl11a-203;Bcl11a-202;Bcl11a-204;Bcl11a-206,Bcl11a;Bcl11a;Bcl11a;Bcl11a;Bcl11a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,51,98,14025,ENSMUSG00000000861,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6317,cg05578628,-0.00000107,0.000000809,-1.320780021,0.187548899,loss,ns,0.0000002,0.00000137,0.145747888,0.884215139,pos,ns,0.000480651,0.000402646,1.193730287,0.233496182,pos,ns,0.631720217,-0.0000156,0.0000138,-1.129528361,0.259548263,neg,ns,0.976239457,Ccser2,Ccser2_Exon,14,36885753,36885802,36885753,36885754,50,-,CGCTTTGTCAGAGAAGTAATGGACTAACTTCTCAACTCCTTGCCAATGGC,"Exon (Ccser2-210/Ccser2, exon 6 of 7)",14,36874936,36968687,93752,2,Ccser2-201,82885,Ccser2-201;Ccser2-202;Ccser2-208;Ccser2-209;Ccser2-210;Ccser2-207;Ccser2-203;Ccser2-205;Ccser2-204,Ccser2;Ccser2;Ccser2;Ccser2;Ccser2;Ccser2;Ccser2;Ccser2;Ccser2,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,72972,ENSMUSG00000058690,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17558,cg14032310,0.00000496,0.00000567,0.874043959,0.382770914,gain,ns,0.0000014,0.00000964,0.14573253,0.884227253,pos,ns,0.005023143,0.002824187,1.778615414,0.076282774,pos,ns,1.117573523,-0.000190041,0.0000971,-1.9566912,0.051281228,neg,ns,0.90511624,Atg10,Atg10_Intron,13,90974320,90974369,90974368,90974369,50,+,TTTTAATCACACCATTAACACTCCTGACATTTCAGAAATAATGTTTATCG,"Intron (Atg10-201/Atg10, intron 5 of 7)",13,90935356,91223968,288613,2,Atg10-201,249599,Atg10-201;Atg10-203;Atg10-202,Atg10;Atg10;Atg10,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,66795,ENSMUSG00000021619,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
439,cg21154038,-0.00000356,0.00000153,-2.324503624,0.02074431,loss,ns,-0.000000379,0.0000026,-0.145730197,0.884229094,neg,ns,-0.000738109,0.000762789,-0.967643983,0.333976512,neg,ns,0.476284075,0.00000551,0.0000262,0.210116864,0.833714494,pos,ns,0.958518557,Dhtkd1,Dhtkd1_Exon,2,5919578,5919627,5919578,5919579,50,-,CGGACCACTTCCTCTGGGCTGTCTCCATTGACATGGATGATGGCACAGCC,"Exon (Dhtkd1-202/Dhtkd1, exon 7 of 17)",2,5896115,5942792,46678,2,Dhtkd1-202,23165,Dhtkd1-202;Dhtkd1-201;Dhtkd1-203,Dhtkd1;Dhtkd1;Dhtkd1,0;0;5149,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,209692,ENSMUSG00000025815,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
195,cg26666685,-0.00000783,0.00000509,-1.539600404,0.124677874,loss,ns,0.00000126,0.00000865,0.145728464,0.884230461,pos,ns,-0.00269973,0.002532812,-1.065902067,0.287297367,neg,ns,0.541668354,0.00000327,0.0000871,0.037550027,0.970070622,pos,ns,0.866899407,Itsn2,Itsn2_threeUTR,12,4676275,4676324,4676275,4676276,50,-,CGTGGAGGCAGGGCAGGCAGCCCTGATCAAATATCTCCTACACAATTCGT,3' UTR,12,4593008,4713950,120943,1,Itsn2-201,83267,Itsn2-201;Itsn2-215;Itsn2-211;Itsn2-214;Itsn2-202;Itsn2-210,Itsn2;Itsn2;Itsn2;Itsn2;Itsn2;Itsn2,0;0;0;0;0;11740,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,2,20403,ENSMUSG00000020640,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12721,cg04794444,0.0000877,0.00000666,13.16407361,9.65E-32,gain,yes,-0.00000165,0.0000113,-0.145618104,0.884317513,neg,ns,0.011727861,0.003316616,3.536092081,0.000468093,pos,ns,3.329667493,-0.0000522,0.000114058,-0.457761114,0.647444753,neg,ns,0.06821535,Shox2,Shox2_Exon,3,66973880,66973929,66973880,66973881,50,+,CGCTGTCCAGCTGCAGCTGCGCCTGAACCTGAAAGGACAAGGGCGTCACG,"Exon (Shox2-203/Shox2, exon 5 of 5)",3,66971727,66981318,9592,2,Shox2-203,7389,Shox2-203;Shox2-201;Shox2-202;Shox2-204;Shox2-205,Shox2;Shox2;Shox2;Shox2;Shox2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,7,20429,ENSMUSG00000027833,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
17215,cg06262174,-0.00000316,0.00000441,-0.717297079,0.473730934,loss,ns,0.00000109,0.00000749,0.145578265,0.884348938,pos,ns,-0.001473058,0.002195133,-0.671056377,0.502684302,neg,ns,0.298704677,0.0000374,0.0000755,0.495883617,0.620327898,pos,ns,0.939374467,Trim46,Trim46_threeUTR,3,89234976,89235025,89234976,89234977,50,-,CGCCACCCCCGATGAAGCAAAAGGCAGGGCACACAGGCCCTGAGCAGTCC,3' UTR,3,89234177,89245013,10837,2,Trim46-203,9988,Muc1-201;Muc1-203;Muc1-202;Trim46-203;Trim46-202;Trim46-201;Trim46-205;Trim46-206,Muc1;Muc1;Muc1;Trim46;Trim46;Trim46;Trim46;Trim46,5919;3737;3505;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,2,360213,ENSMUSG00000042766,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3844,cg21835206,-0.0000143,0.00000576,-2.47347799,0.013916102,loss,ns,-0.00000142,0.00000979,-0.145528878,0.884387896,neg,ns,-0.009810029,0.002867701,-3.420868868,0.00070789,neg,ns,3.15003426,0.000201776,0.0000986,2.045995691,0.041600287,pos,ns,0.887022809,Dmrt1,Dmrt1_Intron,19,25568511,25568560,25568511,25568512,50,+,CGGCCCTTTATAGTAAATCCAGATTGCGATGTGACATTACAGTATATCAT,"Intron (Dmrt1-201/Dmrt1, intron 4 of 4)",19,25505618,25604329,98712,1,Dmrt1-201,62893,Dmrt1-201;Dmrt1-202,Dmrt1;Dmrt1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,9,50796,ENSMUSG00000024837,conserved gene and region,19,25568478,25568596,119,*,119,10,0.529411765,1.202020202,0.084033613,0.000000335,CpGisland,TRUE,U11,Tr-P
26604,cg17485181,0.00000339,0.00000123,2.754596169,0.006223688,gain,ns,-0.000000304,0.00000209,-0.145471125,0.884433452,neg,ns,0.003428139,0.000612687,5.595249397,4.85E-08,pos,ns,7.31458071,-0.000100557,0.0000211,-4.772460646,0.00000281,neg,ns,0.963176063,Pex14,Pex14_Exon,4,148984341,148984390,148984341,148984342,50,+,CGACAGAATATTAGCCTCAACACTGCTTCCAAATGTGGCTCATTCAATTT,"Exon (Gm17029-202/Gm17029-202, exon 3 of 3)",4,148960535,149099876,139342,2,Pex14-201,115486,Pex14-201;Pex14-202;Pex14-205;Pex14-203,Pex14;Pex14;Pex14;Pex14,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,48,56273,ENSMUSG00000028975,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7854,cg04522339,0.000118608,0.0000113,10.46156578,3.89E-22,gain,yes,-0.0000028,0.0000193,-0.145403792,0.884486567,neg,ns,0.022046321,0.005642787,3.90699125,0.000114769,pos,ns,3.940174415,-0.000487104,0.000194055,-2.510135976,0.012577625,neg,ns,0.241970929,Pax5,Pax5_Intron,4,44558548,44558597,44558548,44558549,50,-,CGAAGGAACAATGCTTGACTGATCTAGCTGCGTTAACGAGCAAATTATGG,"Intron (Pax5-201/Pax5, intron 8 of 9)",4,44524757,44710487,185731,2,Pax5-201,151890,Pax5-201;Pax5-202;Pax5-203;Pax5-204;Pax5-205;Pax5-207;Pax5-206;Pax5-209;Pax5-210;Pax5-212;Pax5-213;Pax5-214;Pax5-215;Pax5-220,Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,19,45,18507,ENSMUSG00000014030,conserved gene and region,4,44558357,44558585,229,*,229,14,0.628820961,0.624342746,0.061135371,3.89E-08,CpGisland,TRUE,U11,Tr-P
14465,cg08819519,-0.00000709,0.00000274,-2.584699204,0.010203214,loss,ns,0.000000677,0.00000466,0.145326304,0.884547692,pos,ns,0.002437645,0.001365451,1.785230083,0.075201595,pos,ns,1.123772947,0.00000698,0.000047,0.14864033,0.88193409,pos,ns,0.931748766,Zc3h3,Zc3h3_Intron,15,75795768,75795817,75795768,75795769,50,-,CGGTGGAGGCTCCCACGCTGTTAAATCAAGCGCCTTGCCAATTAAGTGCT,"Intron (Zc3h3-201/Zc3h3, intron 4 of 11)",15,75754430,75841915,87486,2,Zc3h3-201,46098,Zc3h3-201;Zc3h3-203;Zc3h3-202,Zc3h3;Zc3h3;Zc3h3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,18,223642,ENSMUSG00000075600,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19665,cg02997156,-0.0000708,0.00000662,-10.7041861,5.81E-23,loss,yes,-0.00000163,0.0000112,-0.14523634,0.884618659,neg,ns,0.001648424,0.003293895,0.500448173,0.617114633,pos,ns,0.209634156,-0.000709832,0.000113277,-6.266350967,1.24E-09,neg,yes,0.768503407,Eda,Eda_Exon,X,100395119,100395168,100395119,100395120,50,+,CGGCACCTACTTCATCTATAGTCAGGTAGAAGTGAGTACGGTCTTAGGCC,"Exon (Eda-208/Eda, exon 6 of 7)",20,99975606,100400759,425154,1,Eda-208,419513,Eda-208;Eda-209;Eda-202;Eda-203;Eda-206;Eda-205;Eda-207;Eda-204;Eda-201;Eda-212;Eda-210,Eda;Eda;Eda;Eda;Eda;Eda;Eda;Eda;Eda;Eda;Eda,0;0;0;0;0;0;0;0;0;9976;7864,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,9,13607,ENSMUSG00000059327,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10820,cg00687713,-0.00000975,0.00000317,-3.071958897,0.002315178,loss,ns,0.000000782,0.00000539,0.145101237,0.884725237,pos,ns,-0.000440778,0.001579741,-0.279019358,0.780416015,neg,ns,0.107673827,0.0000284,0.0000543,0.522667386,0.601579066,pos,ns,0.918682668,Pck2,Pck2_Exon,14,55544486,55544535,55544534,55544535,50,+,CTATGGTGGCAACTCCCTGCTGGGCAAGAAGTGCTTTGCCCTACGCATCG,"Exon (Pck2-201/Pck2, exon 5 of 10)",14,55540266,55550017,9752,1,Pck2-201,4220,Pck2-201;Pck2-207;Pck2-205;Pck2-206;Pck2-210;Pck2-209;Pck2-203;Pck2-211;Pck2-213;Pck2-208;Pck2-212;Pck2-202;Pck2-204,Pck2;Pck2;Pck2;Pck2;Pck2;Pck2;Pck2;Pck2;Pck2;Pck2;Pck2;Pck2;Pck2,0;0;0;4096;0;0;4019;0;2081;0;916;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,74551,ENSMUSG00000040618,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
568,cg10715730,-0.000000759,0.00000135,-0.561097901,0.575136151,loss,ns,0.000000333,0.0000023,0.145097071,0.884728523,pos,ns,-0.00089515,0.00067329,-1.329517338,0.184654864,neg,ns,0.733639248,0.00000361,0.0000232,0.155807665,0.876286037,pos,ns,0.97201341,Rbfox1,Rbfox1_Intron,16,6882459,6882508,6882459,6882460,50,+,CGGCATTCAATTCTAAGCCTTGCAATATTTGAAGTGTGATACTGTGCTTC,"Intron (Rbfox1-205/Rbfox1, intron 4 of 11)",16,5885355,7353045,1467691,1,Rbfox1-205,997104,Rbfox1-205;Rbfox1-201;Rbfox1-202,Rbfox1;Rbfox1;Rbfox1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,35,268859,ENSMUSG00000008658,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23969,cg08959275,0.0000593,0.00000705,8.412662715,1.49E-15,gain,yes,-0.00000173,0.000012,-0.144913608,0.884873252,neg,ns,0.004998694,0.003507321,1.425216897,0.155100554,pos,ns,0.809386652,-0.000226977,0.000120616,-1.881811329,0.060798367,neg,ns,0.728817214,Serinc4,Serinc4_fiveUTR,2,121453723,121453772,121453723,121453724,50,+,CGGCTGGACAGTGCAGAGAAAGTCAGATACATGATATAGCAGCTGATGAC,Promoter (<=1kb),2,121452154,121453753,1600,2,Serinc4-203,0,Hypk-202;Hypk-203;Hypk-204;Hypk-205;Hypk-201;Serf2-204;Serf2-203;Serf2-202;Serf2-201;Serf2-206;Serf2-205;Serinc4-206;Serinc4-202;Serinc4-201;Serinc4-204;Serinc4-205;Serinc4-203,Hypk;Hypk;Hypk;Hypk;Hypk;Serf2;Serf2;Serf2;Serf2;Serf2;Serf2;Serinc4;Serinc4;Serinc4;Serinc4;Serinc4;Serinc4,0;-2921;-3191;-3352;-3362;4528;4355;4345;4340;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,TRUE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,1,574418,ENSMUSG00000046110,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8561,cg10652715,0.00000325,0.00000184,1.76861863,0.07794091,gain,ns,0.000000451,0.00000312,0.144707055,0.885036202,pos,ns,0.000428857,0.000913727,0.469349036,0.639150107,pos,ns,0.194397134,-0.0000454,0.0000314,-1.444154185,0.149705501,neg,ns,0.944762073,Btrc,Btrc_Exon,19,45337755,45337804,45337755,45337756,50,+,CGAAACAAATTGGAATTGCCTTCTGGAGGCCGTTGTTATAAATTACAGAC,"Exon (Gm28578-208/Gm28578-208, exon 3 of 7)",19,45363734,45507736,144003,1,Btrc-204,-25930,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,30,98,12234,ENSMUSG00000025217,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1062,cg24295666,-0.0000157,0.00000433,-3.629419537,0.000332151,loss,ns,0.00000106,0.00000735,0.144595443,0.885124255,pos,ns,-0.001043886,0.002153204,-0.48480584,0.628156464,neg,ns,0.201932167,-0.000117339,0.000074,-1.584625096,0.114071096,neg,ns,0.88489457,Esrp1,Esrp1_Exon,4,11357447,11357496,11357495,11357496,50,+,AAGAAAAACTTACATGGTAACTTACATGGCGGTGGGGATAAGCCATTTCG,"Exon (Esrp1-201/Esrp1, exon 12 of 15)",4,11331933,11386679,54747,2,Esrp1-201,29183,Esrp1-201;Esrp1-204;Esrp1-203;Esrp1-206;Esrp1-202;Esrp1-207,Esrp1;Esrp1;Esrp1;Esrp1;Esrp1;Esrp1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,207920,ENSMUSG00000040728,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24167,cg24207957,-0.00000362,0.00000139,-2.600016935,0.009768259,loss,ns,0.000000342,0.00000237,0.144527866,0.885177568,pos,ns,-0.000299698,0.000692955,-0.432492308,0.665684348,neg,ns,0.176731654,0.0000021,0.0000238,0.087957251,0.929967444,pos,ns,0.95299841,Bmp8b,Bmp8b_Exon,4,123130491,123130540,123130491,123130492,50,-,CGGTGGAAGCTGCTTCCCTTAAAGCCAAAGCCCTTTTCATGAGTGCACAG,"Exon (Bmp8b-202/Bmp8b, exon 5 of 6)",4,123119324,123132099,12776,1,Bmp8b-202,11167,Bmp8b-201;Bmp8b-202;Ppie-201;Ppie-203;Ppie-202,Bmp8b;Bmp8b;Ppie;Ppie;Ppie,25326;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,12164,ENSMUSG00000002384,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21625,cg14689448,-0.0000177,0.00000549,-3.21906079,0.001422385,loss,ns,-0.00000135,0.00000932,-0.144434433,0.885251281,neg,ns,-0.002059391,0.002731395,-0.753970591,0.451439183,neg,ns,0.345400748,0.0000707,0.0000939,0.752696801,0.452203318,pos,ns,0.90543537,Cep112,Cep112_Intron,11,108621297,108621346,108621297,108621298,50,+,CGTTTTCAGCCACCCAGCTGCGGTTTGAATAAATTGATGTGGAACCAAAG,"Intron (Cep112-213/Cep112, intron 20 of 26)",11,108425192,108860615,435424,1,Cep112-213,196105,Cep112-213;Cep112-201;Cep112-206;Cep112-216;Cep112-208;Cep112-211;Cep112-218,Cep112;Cep112;Cep112;Cep112;Cep112;Cep112;Cep112,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,9,76380,ENSMUSG00000020728,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1861,cg01196619,-0.0000192,0.00000852,-2.258473071,0.024611022,loss,ns,0.00000209,0.0000145,0.144412022,0.885268962,pos,ns,0.001083278,0.004241708,0.255387323,0.798593321,pos,ns,0.097674326,-0.000197366,0.000145872,-1.353005418,0.177039793,neg,ns,0.767796893,Gli3,Gli3_Intron,13,15670561,15670610,15670561,15670562,50,+,CGATTGACAACTCAAAGAGAAAGTATGATTTATTAGCCTATAATGGCTAA,"Intron (Gli3-202/Gli3, intron 10 of 11)",13,15463235,15715091,251857,1,Gli3-202,207326,Gli3-202;Gli3-201,Gli3;Gli3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,19,21,14634,ENSMUSG00000021318,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2379,cg18442187,0.0000237,0.00000508,4.657895327,0.00000475,gain,ns,0.00000125,0.00000863,0.144389698,0.885286574,pos,ns,0.005464901,0.002529524,2.16044626,0.03150409,pos,ns,1.501633063,-0.000022,0.000087,-0.252356742,0.80093257,neg,ns,0.135607092,Tfap2b,Tfap2b_Intron,1,19217442,19217491,19217490,19217491,50,+,TTAAGCGCCAGCATGCTGCGTGAATATCCTGTACAAAAACCCAGCAGGCG,"Intron (Tfap2b-201/Tfap2b, intron 2 of 6)",1,19208914,19238576,29663,1,Tfap2b-201,8528,Tfap2b-201;Tfap2b-204;Tfap2b-202;Tfap2b-205;Tfap2b-203,Tfap2b;Tfap2b;Tfap2b;Tfap2b;Tfap2b,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,40,21419,ENSMUSG00000025927,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
15820,cg11145593,-0.00000849,0.00000802,-1.05811164,0.29082835,loss,ns,-0.00000197,0.0000136,-0.144334084,0.885330451,neg,ns,-0.000383922,0.003993504,-0.096136539,0.92347425,neg,ns,0.03457521,-0.000164175,0.000137336,-1.195424365,0.232834933,neg,ns,0.675940693,Mef2c,Mef2c_fiveUTR,13,83575651,83575700,83575651,83575652,50,+,CGAGAGAGAGAAGAAAAACGGGGACTATGGGGAGAAAAAAGATTCAGATT,Promoter (<=1kb),13,83575677,83662631,86955,1,Mef2c-219,0,Mef2c-218;Mef2c-228;Mef2c-221;Mef2c-229;Mef2c-201;Mef2c-202;Mef2c-207;Mef2c-231;Mef2c-222;Mef2c-223;Mef2c-227;Mef2c-217;Mef2c-213;Mef2c-214;Mef2c-215;Mef2c-226;Mef2c-216;Mef2c-208;Mef2c-206;Mef2c-212;Mef2c-210;Mef2c-203;Mef2c-205;Mef2c-224;Mef2c-204;Mef2c-219;Mef2c-225,Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,9,41,17260,ENSMUSG00000005583,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26913,cg15185648,-0.0000291,0.00000933,-3.123214282,0.001957777,loss,ns,-0.00000229,0.0000159,-0.144294486,0.885361693,neg,ns,-0.006581577,0.004644083,-1.417196226,0.157429793,neg,ns,0.802913077,0.0000196,0.00015971,0.122728718,0.902401448,pos,ns,0.683019841,Prdm16,Prdm16_Intron,4,154604205,154604254,154604205,154604206,50,-,CGAAGATTTATCCCCTGGCCAGACAATACGGCCCTGGGGCTTTAATCTCC,"Intron (Prdm16-201/Prdm16, intron 1 of 16)",4,154316125,154636866,320742,2,Prdm16-201,32612,Prdm16-201;Prdm16-202;Prdm16-203;Prdm16-204;Prdm16-205;Prdm16-206;Prdm16-210;Prdm16-207;Prdm16-212,Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,32,70673,ENSMUSG00000039410,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14216,cg19756357,-0.0000216,0.00000636,-3.397378386,0.00076913,loss,ns,0.00000156,0.0000108,0.144172783,0.885457712,pos,ns,-0.00254778,0.00316474,-0.805052043,0.421406665,neg,ns,0.3752986,-0.000109842,0.000108835,-1.009248493,0.313642572,neg,ns,0.070028336,Mnt,Mnt_Intron,11,74831995,74832044,74832043,74832044,50,-,CTTTGCAGAATGAAATGACATCGCGTGTCTTATGATCCTGGCCAGCCCCG,"Intron (Mnt-201/Mnt, intron 1 of 5)",11,74830920,74845725,14806,1,Mnt-201,1075,Mettl16-205;Mnt-201;Mnt-203,Mettl16;Mnt;Mnt,61165;0;-4282,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,17,17428,ENSMUSG00000000282,conserved gene and region,11,74831764,74832137,374,*,374,30,0.628342246,0.846536895,0.080213904,3.52E-20,CpGisland,TRUE,U1,Pr-A
6563,cg24766227,0.0000019,0.00000402,0.473235699,0.636378088,gain,ns,0.000000983,0.00000683,0.144079825,0.885531053,pos,ns,0.002007056,0.001999729,1.003664242,0.31632325,pos,ns,0.499868886,-0.000127556,0.0000688,-1.854806457,0.064573213,neg,ns,0.924359242,Zfp536,Zfp536_Intron,7,37734794,37734843,37734842,37734843,50,-,TGCATTTCCAAATAGCTTTCTGCATATTTGCACCTCTATAACGGATTCCG,"Intron (Zfp536-202/Zfp536, intron 1 of 6)",7,37479104,37769624,290521,2,Zfp536-202,34781,Zfp536-202;Zfp536-201;Zfp536-203;Zfp536-206;Zfp536-209;Zfp536-208;Zfp536-205;Zfp536-207,Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,73,112,243937,ENSMUSG00000043456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4540,cg23806260,-0.00000155,0.000000585,-2.653070265,0.008387243,loss,ns,0.000000143,0.000000994,0.143956005,0.885628746,pos,ns,0.000365901,0.000291157,1.256713303,0.209803575,pos,ns,0.678187115,-0.0000213,0.00001,-2.129639601,0.033988929,neg,ns,0.012264645,Sipa1l3,Sipa1l3_fiveUTR,7,29518536,29518585,29518536,29518537,50,-,CGCCGCCAGCTCCGGTGGCCCGAGTGACTTCCAGGCTGCCCACTTCCAAG,Promoter (<=1kb),7,29494553,29518560,24008,2,Sipa1l3-213,0,Sipa1l3-202;Sipa1l3-209;Sipa1l3-206;Sipa1l3-213;Sipa1l3-214,Sipa1l3;Sipa1l3;Sipa1l3;Sipa1l3;Sipa1l3,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,1,74206,ENSMUSG00000030583,conserved gene and region,7,29518460,29519470,1011,*,1011,107,0.678536103,0.920812053,0.105835806,6.39E-84,CpGisland,TRUE,U2,Pr-W
8267,cg05782759,-0.0000133,0.0000111,-1.190022137,0.234948248,loss,ns,0.00000273,0.0000189,0.143933889,0.885646196,pos,ns,0.000966394,0.005548701,0.174165893,0.861848771,pos,ns,0.064568933,-0.0000751,0.000190819,-0.393331461,0.694345053,neg,ns,0.767241658,Ebf1,Ebf1_Exon,11,44907904,44907953,44907952,44907953,50,+,CAGCTACTCCCTGTATCAAAGCCATCAGCCCGAGTGAAGGATGGACGACG,"Exon (Ebf1-203/Ebf1, exon 9 of 16)",11,44617317,45004995,387679,1,Ebf1-203,290587,Ebf1-203;Ebf1-202;Ebf1-201;Ebf1-206,Ebf1;Ebf1;Ebf1;Ebf1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,15,80,13591,ENSMUSG00000057098,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13338,cg06679494,-0.0000512,0.00000736,-6.95157599,2.14E-11,loss,yes,0.0000018,0.0000125,0.143882546,0.885686706,pos,ns,-0.006270774,0.003665277,-1.71085947,0.08810743,neg,ns,1.054987466,0.000214277,0.000126049,1.699955628,0.090142295,pos,ns,0.902872118,0610010K14Rik,0610010K14Rik_Exon,11,70234752,70234801,70234752,70234753,50,-,CGGCACTGTGGCCACGTCCAAACCACACTGTGGTGTTAGAGCGAGGGTGG,"Exon (Mir497-201/Mir497-201, exon 1 of 1)",11,70235206,70236196,991,2,0610010K14Rik-211,1444,0610010K14Rik-211;0610010K14Rik-210;0610010K14Rik-205;0610010K14Rik-209;0610010K14Rik-202;0610010K14Rik-204;0610010K14Rik-208;0610010K14Rik-207;0610010K14Rik-203;0610010K14Rik-213;0610010K14Rik-212;0610010K14Rik-206;0610010K14Rik-201;0610010K14Rik-214;Bcl6b-202;Gm21988-201;Gm21988-202;Rnasek-202;Rnasek-201;Rnasek-203,0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;0610010K14Rik;Bcl6b;Gm21988;Gm21988;Rnasek;Rnasek;Rnasek,1395;0;0;0;0;0;0;0;0;0;0;0;0;0;-4954;0;0;4979;5041;4257,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,9,104457,ENSMUSG00000020831,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5183,cg09440407,-0.0000706,0.00000986,-7.163368157,5.76E-12,loss,yes,-0.00000241,0.0000167,-0.143783334,0.885764985,neg,ns,-0.007771273,0.004905775,-1.584107195,0.11418891,neg,ns,0.942376074,-0.0000151,0.000168709,-0.089733528,0.928556919,neg,ns,0.754371071,Prrxl1,Prrxl1_Intron,14,32606643,32606692,32606643,32606644,50,+,CGAAGCTGATGTTGTCAAACAATAACTAAATAGGGAAATAAACGACTCCA,"Intron (Prrxl1-203/Prrxl1, intron 4 of 7)",14,32599407,32649204,49798,1,Prrxl1-203,7236,Prrxl1-203;Prrxl1-204;Prrxl1-202;Prrxl1-201;Prrxl1-205,Prrxl1;Prrxl1;Prrxl1;Prrxl1;Prrxl1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,23,107751,ENSMUSG00000041730,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26759,cg08611794,-0.000000161,0.00000575,-0.027927073,0.977738285,loss,ns,-0.0000014,0.00000977,-0.143670292,0.885854178,neg,ns,-0.003024602,0.002863467,-1.056272785,0.291666066,neg,ns,0.535114096,-0.000000808,0.0000985,-0.008204312,0.993459257,neg,ns,0.607801876,Scrt2,Scrt2_Intron,2,152084448,152084497,152084448,152084449,50,-,CGGAAATAACCTTGCTGAGCATTTGAGGGAAGTGTGAAAAATTGCTGAGC,"Intron (Scrt2-201/Scrt2, intron 1 of 1)",2,152081529,152095802,14274,1,Scrt2-201,2919,Scrt2-201,Scrt2,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,10,545474,ENSMUSG00000060257,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14593,cg09853372,0.0000173,0.0000046,3.758017502,0.000204609,gain,ns,-0.00000112,0.00000782,-0.143660566,0.885861852,neg,ns,-0.001953906,0.002290226,-0.853149757,0.394234963,neg,ns,0.404244862,0.0000263,0.0000788,0.334114903,0.738518769,pos,ns,0.899239418,Pcbp3,Pcbp3_Exon,10,76785121,76785170,76785121,76785122,50,-,CGAGCGGATCGGCTCTTACCTGACCACCTGCAAAAATGACAGGGGTGGAG,"Exon (Pcbp3-201/Pcbp3, exon 10 of 16)",10,76761857,76961788,199932,2,Pcbp3-201,176618,Pcbp3-201;Pcbp3-207;Pcbp3-206;Pcbp3-203;Pcbp3-205;Pcbp3-209;Pcbp3-202;Pcbp3-208,Pcbp3;Pcbp3;Pcbp3;Pcbp3;Pcbp3;Pcbp3;Pcbp3;Pcbp3,0;0;0;0;0;0;0;120692,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,59093,ENSMUSG00000001120,conserved gene and region,10,76784969,76785131,163,*,163,14,0.656441718,0.823232323,0.085889571,4.50E-10,CpGisland,TRUE,U15,NS
3614,cg14472440,-0.00000619,0.00000149,-4.163782414,0.0000406,loss,ns,-0.000000362,0.00000253,-0.143561705,0.885939857,neg,ns,-0.000548325,0.000739741,-0.741239536,0.459109346,neg,ns,0.338083866,-0.0000225,0.0000254,-0.883149184,0.377840021,neg,ns,0.051775446,Rps24,Rps24_Intron,14,24779251,24779300,24779299,24779300,50,-,GCCTTGGCAGCAGAAGGTGACATCTGGTGACTAATGGCCGCGGCTGCGCG,"Intron (4930428N03Rik-205/4930428N03Rik-205, intron 3 of 5)",14,24491149,24491989,841,1,Rps24-209,288151,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,12,20088,ENSMUSG00000025290,mapped to different genes,14,24779188,24779323,136,*,136,14,0.720588235,0.801346801,0.102941177,3.56E-11,CpGisland,TRUE,NA,NRS
13305,cg18387014,0.000012,0.00000223,5.353658063,0.000000168,gain,yes,0.000000544,0.00000379,0.143413025,0.886057173,pos,ns,-0.00202352,0.001110962,-1.821412596,0.069507854,neg,ns,1.157966118,0.0000376,0.0000382,0.984988324,0.325397939,pos,ns,0.062728641,Egr3,Egr3_Promoter,14,70076767,70076816,70076815,70076816,50,+,GCTTCCTGCTTTCTAATGTTCCATTGTGAGGAGCTTCCATTGTGACGTCG,Promoter (<=1kb),14,70077203,70079955,2753,1,Egr3-201,-387,Egr3-201;Egr3-204;Egr3-203;Egr3-202,Egr3;Egr3;Egr3;Egr3,0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,10,19,13655,ENSMUSG00000033730,conserved gene and region,14,70076812,70076877,66,*,66,7,0.621212121,1.105263158,0.106060606,0.00000889,CpGisland,TRUE,U3,Pr-B
9422,cg01690057,0.000036,0.00000527,6.819138851,4.80E-11,gain,yes,0.00000128,0.00000896,0.143391407,0.886074231,pos,ns,-0.002694264,0.002624898,-1.026426123,0.305491009,neg,ns,0.515001568,0.0000862,0.0000903,0.954527816,0.340560254,pos,ns,0.822586186,Barx1,Barx1_Intergenic_downstream,13,48687273,48687322,48687321,48687322,50,-,TTACAGTGTCTCCCCACTGCCCCACTCCTGAAATTTGAAATTGCTGAACG,Distal Intergenic,13,48662998,48666507,3510,1,Barx1-201,24324,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,3,12022,ENSMUSG00000021381,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12845,cg03985370,-0.00000479,0.00000395,-1.213160998,0.225991858,loss,ns,-0.00000096,0.0000067,-0.143235714,0.886197083,neg,ns,-0.001383875,0.001964152,-0.704566281,0.481609157,neg,ns,0.317305264,-0.0000323,0.0000675,-0.478358522,0.632732229,neg,ns,0.930082177,Ebf2,Ebf2_Intron,14,67300610,67300659,67300658,67300659,50,-,TTATTGCCTCTCTCCCCAGCAAGGTCTATGGTGCCACTGGGATCCATTCG,"Intron (Ebf2-201/Ebf2, intron 7 of 16)",14,67233292,67429777,196486,1,Ebf2-201,67318,Ebf2-201;Ebf2-203;Ebf2-202,Ebf2;Ebf2;Ebf2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,21,13592,ENSMUSG00000022053,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15860,cg08005019,0.00000221,0.00000322,0.685819596,0.493339446,gain,ns,0.000000784,0.00000547,0.143163968,0.886253697,pos,ns,0.000280155,0.00160351,0.174713598,0.861418732,pos,ns,0.064785688,0.0000435,0.0000551,0.788772335,0.43084788,pos,ns,0.049932601,Gm6411,Gm6411_Intron,13,83729704,83729753,83729752,83729753,50,+,TATTTTTTTAATGCCCTAATTTCCTTGATGTATGTAAATGTAGCCGGACG,"Intron (C130071C03Rik-201/C130071C03Rik-201, intron 1 of 3)",13,83761132,83762335,1204,2,Gm6411-201,32582,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,36,623241,NA,mapped to different genes,13,83729748,83729900,153,*,153,14,0.620915033,0.998136067,0.091503268,1.88E-10,CpGisland,TRUE,U3,Pr-B
10837,cg27520780,-0.000000837,0.0000124,-0.067769555,0.946012769,loss,ns,0.000003,0.000021,0.143060434,0.886335395,pos,ns,-0.009757563,0.006148171,-1.587067744,0.113516734,neg,ns,0.944940114,0.0002966,0.000211435,1.402796117,0.16167835,pos,ns,0.434049359,Neurod6,Neurod6_Intergenic_downstream,6,55580134,55580183,55580182,55580183,50,-,TCTCCTGGGTAAATCTTGGCACCAGTTCTGACTTCAAATCTCTTGGGTCG,Distal Intergenic,6,55677822,55681263,3442,2,Neurod6-201,101129,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,16,11922,ENSMUSG00000037984,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17180,cg08310432,-0.0000109,0.00000491,-2.214356772,0.02753145,loss,ns,-0.00000119,0.00000833,-0.143053518,0.886340852,neg,ns,0.001356775,0.002441437,0.555727867,0.578797745,pos,ns,0.237473169,-0.00013209,0.000084,-1.573236347,0.116684114,neg,ns,0.920059942,Mov10l1,Mov10l1_Exon,15,89054230,89054279,89054230,89054231,50,+,CGGTCAAATGAAGATAGATTTGAAGATGATCGATATTTTTTGGGTTTCTT,"Exon (Mov10l1-203/Mov10l1, exon 25 of 27)",15,88982909,89055148,72240,1,Mov10l1-203,71321,Mov10l1-203;Mov10l1-201;Mov10l1-202,Mov10l1;Mov10l1;Mov10l1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,83456,ENSMUSG00000015365,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23972,cg21213241,0.0000127,0.00000326,3.88945531,0.000122968,gain,ns,-0.000000792,0.00000554,-0.143009093,0.886375908,neg,ns,0.002064364,0.001622773,1.272121291,0.204283448,pos,ns,0.689766821,0.00000197,0.0000558,0.035289402,0.971871686,pos,ns,0.948064868,Frmd5,Frmd5_threeUTR,2,121548686,121548735,121548686,121548687,50,+,CGGATTTTGCAGGCAAACCATCGCCTGAGGGGACAAAAGTATTGATAGTG,3' UTR,2,121545529,121586433,40905,2,Frmd5-206,37698,Frmd5-206;Frmd5-202;Frmd5-207;Frmd5-205;Frmd5-203;Frmd5-212;Frmd5-204;Frmd5-201;Frmd5-213;Frmd5-211;Wdr76-203,Frmd5;Frmd5;Frmd5;Frmd5;Frmd5;Frmd5;Frmd5;Frmd5;Frmd5;Frmd5;Wdr76,0;0;0;0;0;0;0;0;0;9822;41903,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,4,228564,ENSMUSG00000027238,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19346,cg16862391,-0.0000179,0.0000053,-3.372018365,0.000840771,loss,ns,-0.00000128,0.000009,-0.142726545,0.886598872,neg,ns,0.000190233,0.00263706,0.072138258,0.942538399,pos,ns,0.025700948,-0.000285727,0.0000907,-3.150646921,0.00178811,neg,ns,0.878522705,Stard8,Stard8_Exon,X,99073087,99073136,99073087,99073088,50,+,CGTTCTCCTGACTGGTACAACAAAGTCTTTGGACACCTGTGTGCCATGGA,"Exon (Stard8-201/Stard8, exon 14 of 14)",20,99042581,99074728,32148,1,Stard8-201,30506,Stard8-201;Stard8-202,Stard8;Stard8,0;4479,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,236920,ENSMUSG00000031216,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12150,cg11923198,0.0000401,0.00000624,6.421265944,5.07E-10,gain,yes,0.00000151,0.0000106,0.142676972,0.886637993,pos,ns,0.010583264,0.00310627,3.407064774,0.000743302,pos,ns,3.128834883,-0.000323813,0.000106824,-3.031267412,0.002640664,neg,ns,0.185312822,Skor1,Skor1_Intron,9,63139748,63139797,63139796,63139797,50,-,CTAACCAAAATTAAAGCAAACTTAGGCATTACTTCCCAGGTAATTTTACG,"Intron (Skor1-203/Skor1, intron 7 of 8)",9,63138170,63147011,8842,2,Skor1-203,7214,Skor1-203;Skor1-202;Skor1-201,Skor1;Skor1;Skor1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,15,207667,ENSMUSG00000022245,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
2310,cg11851593,-0.0000345,0.00000504,-6.836814141,4.31E-11,loss,yes,0.00000122,0.00000856,0.142613123,0.886688379,pos,ns,-0.005014317,0.002509132,-1.998426636,0.046543516,neg,ns,1.332140811,0.000188818,0.0000863,2.188208845,0.029400522,pos,ns,0.932069362,Meis1,Meis1_Exon,11,19010708,19010757,19010756,19010757,50,-,GTCTAGAAGCGTTCGGCCGAGGAAAACTGACAAGACAGGCTAATGAACCG,"Exon (Gm16140-201/Gm16140-201, exon 2 of 2)",11,18879817,19018985,139169,2,Meis1-206,8228,Meis1-206;Meis1-202;Meis1-209;Meis1-201;Meis1-203;Meis1-208;Meis1-207;Meis1-204;Meis1-205,Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,21,88,17268,ENSMUSG00000020160,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23748,cg24596898,0.00003,0.0000166,1.806021698,0.07188477,gain,ns,0.00000403,0.0000283,0.142510845,0.886769092,pos,ns,0.004503928,0.008276412,0.544188511,0.586702946,pos,ns,0.231581731,-0.0000775,0.000284625,-0.272230798,0.785625791,neg,ns,0.601170641,Foxo6,Foxo6_threeUTR,4,120267103,120267152,120267151,120267152,50,-,GAAAATATGCTGTACAATGCACTCTACACAGCCTCGACACGGCACACACG,3' UTR,4,120267079,120287349,20271,2,Foxo6-201,20197,Foxo6-201,Foxo6,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,42,329934,ENSMUSG00000052135,conserved gene but different region,4,120267131,120267236,106,*,106,19,0.745283019,1.388965517,0.179245283,2.86E-20,CpGisland,TRUE,U13,Hc-P
11865,cg02938338,0.0000727,0.000012,6.058239901,3.98E-09,gain,yes,0.0000029,0.0000204,0.14236867,0.886881292,pos,ns,0.022693301,0.00596878,3.80199999,0.000172826,pos,ns,3.762390226,-0.00050637,0.000205266,-2.466900861,0.01416919,neg,ns,0.298511072,Tle3,Tle3_Promoter,9,61366172,61366221,61366220,61366221,50,+,CACAAATCTCTTAATTAGAATGCCCAATCACTTCGATAAATATTTACCCG,Promoter (6-7kb),9,61372366,61418497,46132,1,Tle3-218,-6145,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,11,30,21887,ENSMUSG00000032280,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21820,cg16299341,-0.00000138,0.00000111,-1.24503097,0.214060696,loss,ns,0.000000268,0.00000188,0.142367768,0.886882004,pos,ns,-0.000338674,0.000551251,-0.614374313,0.539418638,neg,ns,0.268074052,0.0000149,0.000019,0.78458782,0.433294411,pos,ns,0.029459647,Osbpl9,Osbpl9_fiveUTR,4,109202173,109202222,109202173,109202174,50,+,CGTTAGTCCATTTGCTCAGCGGCCCTTCCATGATGGACGCCATCTTGGGA,Promoter (<=1kb),4,109061655,109202217,140563,2,Osbpl9-214,0,Osbpl9-219;Osbpl9-214;Osbpl9-211;Osbpl9-201;Osbpl9-218;Osbpl9-206;Osbpl9-212,Osbpl9;Osbpl9;Osbpl9;Osbpl9;Osbpl9;Osbpl9;Osbpl9,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,2,100273,ENSMUSG00000028559,conserved gene but different region,4,109201907,109202368,462,*,462,41,0.658008658,0.827920801,0.088744589,3.37E-29,CpGisland,TRUE,U1,Pr-A
11582,cg16437032,-0.00000216,0.00000327,-0.66077797,0.509245451,loss,ns,-0.000000789,0.00000555,-0.142236535,0.886985571,neg,ns,-0.000473559,0.001626134,-0.291217799,0.771079504,neg,ns,0.112900841,0.0000206,0.0000559,0.367700253,0.71334767,pos,ns,0.922850606,Pkp4,Pkp4_fiveUTR,2,59266412,59266461,59266412,59266413,50,+,CGAGAACTGGAAGTGGAAAGGCAGATTGTTGCCAGTCAGCTAGAAAGATG,5' UTR,2,59160850,59355204,194355,1,Pkp4-210,105562,Pkp4-210;Pkp4-202;Pkp4-211;Pkp4-205;Pkp4-201;Pkp4-212;Pkp4-213;Pkp4-214;Pkp4-203;Pkp4-207,Pkp4;Pkp4;Pkp4;Pkp4;Pkp4;Pkp4;Pkp4;Pkp4;Pkp4;Pkp4,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,7,227937,ENSMUSG00000026991,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19883,cg06485758,0.00000294,0.00000675,0.436502656,0.662775928,gain,ns,-0.00000163,0.0000115,-0.142157057,0.887048295,neg,ns,-0.003605249,0.003357914,-1.073657217,0.283811361,neg,ns,0.546970224,0.000130274,0.000115478,1.128126723,0.260138739,pos,ns,0.796240914,Itgb1bp2,Itgb1bp2_Exon,X,101452810,101452859,101452858,101452859,50,-,GTAATTCTTTTCTCTCAGCTTCATGTCCACATTGTCTTTGATGGTAACCG,"Exon (Itgb1bp2-201/Itgb1bp2, exon 10 of 11)",20,101449088,101453541,4454,1,Itgb1bp2-201,3722,Itgb1bp2-201;Itgb1bp2-202;Nono-201;Nono-204;Nono-203,Itgb1bp2;Itgb1bp2;Nono;Nono;Nono,0;0;0;0;6987,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,2,26549,ENSMUSG00000031312,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24287,cg15426639,0.00000256,0.00000176,1.450297494,0.14798659,gain,ns,-0.000000425,0.000003,-0.142031258,0.887147577,neg,ns,0.001583887,0.000877497,1.805004524,0.072044187,pos,ns,1.142401053,-0.0000825,0.0000302,-2.735082822,0.006595477,neg,ns,0.03497808,Pou3f1,Pou3f1_Intron,4,124478243,124478292,124478291,124478292,50,+,GTGACCCTTGCCCTTGTTTTGTTAAACATGAACCAGACATGAATCAGACG,"Intron (1700057H15Rik-202/1700057H15Rik-202, intron 2 of 3)",4,124656807,124660655,3849,1,Pou3f1-201,-178515,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,43,85,18991,ENSMUSG00000090125,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
19555,cg12560193,-0.00000566,0.00000658,-0.860717956,0.390058603,loss,ns,0.00000159,0.0000112,0.141937603,0.887221491,pos,ns,0.003706225,0.003273904,1.132050636,0.258488042,pos,ns,0.587559544,-0.0000701,0.000112589,-0.622865328,0.533830955,neg,ns,0.875176471,Cldn18,Cldn18_Intergenic_upstream,9,99774058,99774107,99774106,99774107,50,+,GGACTTACTTTCACACTGAAATATGTCCCTTGTAGGAACTGCTATAAACG,Distal Intergenic,9,99692722,99717267,24546,2,Cldn18-203,-56791,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,3,56492,ENSMUSG00000032473,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1676,cg23180092,-0.000000147,0.00000113,-0.129927763,0.896707844,loss,ns,0.000000272,0.00000192,0.141926572,0.887230197,pos,ns,0.000768659,0.000561974,1.367785434,0.17236996,pos,ns,0.763538418,-0.0000187,0.0000193,-0.968098374,0.333749916,neg,ns,0.039512025,Sesn3,Sesn3_Intron,9,14277173,14277222,14277221,14277222,50,-,ATAGAAAGTTTACTCCAGTATTGTTTAGCTTACTTGGCTTAATCGCCCCG,"Intron (Sesn3-207/Sesn3, intron 1 of 8)",9,14275067,14325817,50751,1,Sesn3-207,2106,Sesn3-207;Sesn3-201;Sesn3-205;Sesn3-204,Sesn3;Sesn3;Sesn3;Sesn3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,75747,ENSMUSG00000032009,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15824,cg25668722,-0.0000612,0.0000108,-5.690003867,2.94E-08,loss,yes,0.00000259,0.0000183,0.1419203,0.887235147,pos,ns,-0.012142619,0.005350597,-2.26939516,0.02393107,neg,ns,1.621037878,0.000115215,0.000184007,0.626144574,0.531680872,pos,ns,0.853721117,Kcng3,Kcng3_Exon,17,83588168,83588217,83588216,83588217,50,+,TTCTAAGTACCCTCAAGGTGACTCCAGCCCTCTGGAGTTGAGAGTTCTCG,"Exon (Kcng3-201/Kcng3, exon 2 of 2)",17,83585957,83631895,45939,2,Kcng3-201,43678,Kcng3-201;Kcng3-202,Kcng3;Kcng3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,225030,ENSMUSG00000045053,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13595,cg05535461,-0.00000736,0.00000264,-2.792780515,0.005550517,loss,ns,0.000000635,0.00000448,0.141856463,0.887285529,pos,ns,0.000711269,0.001312202,0.542042722,0.588178476,pos,ns,0.230490873,-0.000106188,0.0000451,-2.353122253,0.019240968,neg,ns,0.935856402,Metap1d,Metap1d_Intron,2,71517174,71517223,71517174,71517175,50,+,CGGAACAACAAATGATAGCTAACTACAGAGGCACATTTGCAGTAGTCACA,"Intron (Metap1d-201/Metap1d, intron 6 of 9)",2,71453276,71525191,71916,1,Metap1d-201,63898,Metap1d-201;Metap1d-202;Metap1d-205;Metap1d-203;Metap1d-204;Metap1d-206,Metap1d;Metap1d;Metap1d;Metap1d;Metap1d;Metap1d,0;0;0;0;0;1762,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,5,66559,ENSMUSG00000041921,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26091,cg09921638,-0.0000468,0.00000711,-6.578890727,2.02E-10,loss,yes,0.00000171,0.0000121,0.141800156,0.887329969,pos,ns,-0.009674733,0.003539113,-2.733660272,0.00662335,neg,ns,2.178922267,-0.0000656,0.00012171,-0.53906548,0.590228594,neg,ns,0.87070958,Sox5,Sox5_Intron,6,143854129,143854178,143854177,143854178,50,+,CTTTAAAAAGCTCCTTAAAAACTCACACCATAATTGCTCCCCACCAAGCG,"Intron (Sox5-201/Sox5, intron 11 of 14)",6,143828425,144209480,381056,2,Sox5-201,355302,Sox5-201;Sox5-214;Sox5-205;Sox5-204;Sox5-202;Sox5-203;Sox5-209;Sox5-211,Sox5;Sox5;Sox5;Sox5;Sox5;Sox5;Sox5;Sox5,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,71,20678,ENSMUSG00000041540,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5305,cg13542562,0.00000093,0.00000177,0.526164391,0.599150211,gain,ns,-0.000000426,0.000003,-0.141778641,0.887346949,neg,ns,0.00028588,0.000879892,0.324903501,0.745473258,pos,ns,0.127567931,-0.0000119,0.0000303,-0.391726029,0.695529796,neg,ns,0.969784958,Atxn7l1,Atxn7l1_Exon,12,33367780,33367829,33367780,33367781,50,+,CGTAAGAACTCGAGTTCTAGTAGCAAAGCCTGTAAAATCACTAAAATGCC,"Exon (Atxn7l1-212/Atxn7l1, exon 11 of 13)",12,33147754,33373030,225277,1,Atxn7l1-212,220026,Atxn7l1-212;Atxn7l1-204;Atxn7l1-202;Atxn7l1-213;Atxn7l1-205;Atxn7l1-209,Atxn7l1;Atxn7l1;Atxn7l1;Atxn7l1;Atxn7l1;Atxn7l1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,24,380753,ENSMUSG00000020564,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
570,cg26382551,0.0000198,0.0000336,0.587960397,0.556986941,gain,ns,-0.00000809,0.0000571,-0.141692586,0.887414868,neg,ns,0.009865305,0.016733416,0.589557168,0.555916998,pos,ns,0.254990046,-0.000993834,0.000575461,-1.727022249,0.085159779,neg,ns,0.65713446,Celf2,Celf2_fiveUTR,2,6884923,6884972,6884971,6884972,50,+,CTCAACAAAAGCCAGTTCAGAAGTATGCTCAAACATCAATGCCACAGTCG,Promoter (<=1kb),2,6544807,6884947,340141,2,Celf2-223,0,Celf2-201;Celf2-204;Celf2-214;Celf2-206;Celf2-226;Celf2-223;Celf2-221;Celf2-225;Celf2-217;Celf2-210;Celf2-209;Celf2-219;Celf2-218;Celf2-203,Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,24,14007,ENSMUSG00000002107,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21899,cg21168562,0.0000492,0.0000112,4.406441093,0.0000145,gain,ns,-0.00000269,0.000019,-0.141664001,0.887437429,neg,ns,0.011766835,0.00555942,2.116558079,0.035093949,pos,ns,1.454767757,0.000179846,0.000191188,0.940678511,0.347602051,pos,ns,0.280726846,Bdnf,Bdnf_fiveUTR,2,109675167,109675216,109675167,109675168,50,-,CGGATATTGCAAAGGGTTATTAGATTCATAAGTCACACCAAGTGGTGGGC,Promoter (<=1kb),2,109674700,109727007,52308,1,Bdnf-201,467,Bdnf-201;Bdnf-207;Bdnf-208;Bdnf-210;Bdnf-206,Bdnf;Bdnf;Bdnf;Bdnf;Bdnf,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,8,18,12064,ENSMUSG00000048482,conserved gene and region,2,109674953,109675235,283,*,283,14,0.462897527,0.943333333,0.049469965,0.000000519,CpGisland,TRUE,U13,Hc-P
14217,cg10081375,0.0000057,0.00000178,3.199289014,0.001520241,gain,ns,0.000000428,0.00000303,0.141591683,0.887494506,pos,ns,0.002114934,0.00088655,2.385578104,0.017652597,pos,ns,1.753191403,-0.0000725,0.0000305,-2.378242008,0.018001155,neg,ns,0.957666315,Mnt,Mnt_threeUTR,11,74845483,74845532,74845483,74845484,50,-,CGACCCCAGACTGTAGAGATTTTTATGTGTTTGGATACATCTGCTGTGTG,3' UTR,11,74830920,74845725,14806,1,Mnt-201,14563,Mnt-201;Mnt-202;Sgsm2-201;Sgsm2-202,Mnt;Mnt;Sgsm2;Sgsm2,0;8015;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,17,17428,ENSMUSG00000000282,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2590,cg14030336,-0.00000159,0.000000505,-3.14144101,0.001843471,loss,ns,0.000000122,0.000000858,0.141587087,0.887498134,pos,ns,-0.0000094,0.000251419,-0.037406834,0.9701847,neg,ns,0.013145578,-0.0000146,0.00000865,-1.691301165,0.091784295,neg,ns,0.008816108,Eif4g1,Eif4g1_fiveUTR,16,20672807,20672856,20672855,20672856,50,+,CGGAAATGGTTGTGGACTACGTCTGTGCGGCTGCGTGGGGCTCGGCCGCG,Promoter (<=1kb),16,20672820,20678639,5820,1,Eif4g1-225,0,Eif4g1-220;Eif4g1-208;Eif4g1-201;Eif4g1-206;Eif4g1-216;Eif4g1-202;Eif4g1-217;Eif4g1-207;Eif4g1-218;Eif4g1-225;Eif4g1-214;Eif4g1-203;Eif4g1-222;Eif4g1-221;Eif4g1-205;Eif4g1-212;Eif4g1-204;Eif4g1-215;Eif4g1-219,Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1;Eif4g1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,7,10,208643,ENSMUSG00000045983,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
701,cg06338978,-0.000000142,0.00000145,-0.097941798,0.922041805,loss,ns,-0.000000348,0.00000246,-0.141449577,0.887606667,neg,ns,0.000540689,0.000720944,0.749974357,0.453838946,pos,ns,0.343098239,-0.0000136,0.0000248,-0.548823066,0.58352194,neg,ns,0.964451755,Pxk,Pxk_Exon,14,8146224,8146273,8146272,8146273,50,-,AAGCCTGTAAAAATGGCATGCCTACCATCTCCCGGCTCTTACAGATGCCG,"Exon (Pxk-201/Pxk, exon 12 of 18)",14,8098211,8165117,66907,1,Pxk-201,48013,Pxk-201;Pxk-202;Pxk-204;Pxk-205,Pxk;Pxk;Pxk;Pxk,0;0;47972;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,218699,ENSMUSG00000033885,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27437,cg19865442,-0.00000187,0.00000121,-1.549337568,0.122320854,loss,ns,-0.00000029,0.00000205,-0.141366006,0.887672628,neg,ns,0.000369715,0.000601001,0.615165463,0.538896765,pos,ns,0.268494423,-0.0000171,0.0000207,-0.827465372,0.408609853,neg,ns,0.97214746,Pbx1,Pbx1_Intron,1,168182930,168182979,168182978,168182979,50,+,TCTCCTTGTGTCTGTCTGATCGATTTCACTCTGTGCGACATAGCTTGTCG,"Intron (Pbx1-208/Pbx1, intron 7 of 7)",1,168119364,168432270,312907,2,Pbx1-208,249291,Pbx1-208;Pbx1-205;Pbx1-206;Pbx1-201;Pbx1-202,Pbx1;Pbx1;Pbx1;Pbx1;Pbx1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,84,18514,ENSMUSG00000052534,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6530,cg18722124,-0.0000148,0.0000073,-2.031706535,0.043035947,loss,ns,-0.00000175,0.0000124,-0.141362593,0.887675322,neg,ns,0.001719817,0.003634697,0.473166429,0.636427447,pos,ns,0.196251099,-0.000281363,0.000124997,-2.250956928,0.025088651,neg,ns,0.873558188,Zfp536,Zfp536_Intron,7,37628522,37628571,37628570,37628571,50,+,CATTTTTGTGTCAGTCTCAAACTGCAGAACTGTTAAGCTGTTCTGGTTCG,"Intron (Zfp536-202/Zfp536, intron 4 of 6)",7,37479104,37769624,290521,2,Zfp536-202,141053,Zfp536-202;Zfp536-201;Zfp536-203;Zfp536-206;Zfp536-209;Zfp536-208,Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,73,112,243937,ENSMUSG00000043456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25743,cg22059812,0.0000375,0.00000552,6.796290291,5.51E-11,gain,yes,0.00000132,0.00000937,0.141277256,0.887742678,pos,ns,0.005687707,0.0027449,2.072099723,0.03908266,pos,ns,1.408015886,0.0000289,0.0000944,0.306117902,0.759720358,pos,ns,0.120916911,Htr6,Htr6_Exon,4,139074395,139074444,139074443,139074444,50,-,CCAGGCTGATGAGGCAGAGGTTGAGGATGGAGGCGCTGCAGCACATCACG,"Exon (Htr6-202/Htr6, exon 2 of 4)",4,139061108,139075570,14463,2,Htr6-202,1126,Htr6-202;Htr6-201,Htr6;Htr6,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,15565,ENSMUSG00000028747,conserved gene and region,4,139074297,139074504,208,*,208,20,0.668269231,0.881355932,0.096153846,3.28E-15,CpGisland,TRUE,U13,Hc-P
27904,cg01838477,-0.00000114,0.00000288,-0.397233569,0.691468588,loss,ns,-0.00000069,0.00000489,-0.141207208,0.887797967,neg,ns,-0.002301696,0.001431832,-1.607518476,0.10895867,neg,ns,0.962738205,0.00000228,0.0000492,0.046372041,0.963043579,pos,ns,0.96102843,Prox1,Prox1_Exon,1,190161678,190161727,190161726,190161727,50,-,TCATTTTCATTGCCCCTTAATGCCACACTGGGGGAATGGCTCATACCCCG,"Exon (Prox1-202/Prox1, exon 2 of 5)",1,190118035,190170714,52680,2,Prox1-202,8987,Prox1-202;Prox1-201;Prox1-203,Prox1;Prox1;Prox1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,19,59,19130,ENSMUSG00000010175,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13178,cg00859590,0.0000324,0.00000734,4.420378238,0.0000136,gain,ns,0.00000176,0.0000125,0.141118241,0.88786819,pos,ns,0.00237648,0.003652415,0.650660002,0.51574794,pos,ns,0.287562498,0.0000297,0.000125606,0.236466893,0.813226563,pos,ns,0.105112106,Gm47203,Gm47203_Intergenic_upstream,9,69670263,69670312,69670263,69670264,50,-,CGGCAAAGCACATTATAATTGTTTAAGCAGGCCCCACAAGTCATGCATTT,Distal Intergenic,9,69599307,69599754,448,2,Gm47203-201,-70558,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
9245,cg24740737,0.0000158,0.00000988,1.603081958,0.109934923,gain,ns,-0.00000237,0.0000168,-0.141014327,0.887950212,neg,ns,0.010376493,0.004917438,2.11014224,0.035647078,pos,ns,1.447976068,-0.000117816,0.00016911,-0.696682514,0.48652357,neg,ns,0.931266581,Cadm1,Cadm1_Intron,9,47838873,47838922,47838921,47838922,50,-,GCCTAGAGACTGAATTCAATTATAATACAAGACAAACCGGTTAACACCCG,"Intron (Cadm1-204/Cadm1, intron 8 of 9)",9,47530173,47853385,323213,1,Cadm1-204,308700,Cadm1-204;Cadm1-209;Cadm1-206;Cadm1-202;Cadm1-203;Cadm1-211;Cadm1-201,Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,77,54725,ENSMUSG00000032076,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15517,cg19917700,0.00000225,0.00000524,0.429736679,0.667685746,gain,ns,0.00000125,0.0000089,0.141005218,0.887957402,pos,ns,0.00468808,0.002606684,1.798484169,0.07307302,pos,ns,1.136242943,-0.000162299,0.0000896,-1.810487611,0.071188278,neg,ns,0.920179917,Gm7503,Gm7503_Intron,18,81510247,81510296,81510247,81510248,50,+,CGGAACAGTTTGAGCTTAACTTTCAGCCATTAAACATATTGAAATTGTTT,"Intron (Gm50412-201/Gm50412-201, intron 2 of 2)",18,80997003,80997383,381,2,Gm7503-201,-512864,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,21,665124,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23125,cg22597801,-0.0000152,0.00000563,-2.690966789,0.007511009,loss,ns,-0.00000135,0.00000957,-0.14100332,0.8879589,neg,ns,-0.000918256,0.002803552,-0.327532981,0.743485879,neg,ns,0.128727275,0.0000455,0.0000964,0.472045355,0.637226516,pos,ns,0.873673248,Rnf220,Rnf220_Intron,4,117315047,117315096,117315095,117315096,50,-,ACGTCAAATACATTATCCGTGTAATACACTTGTCTGGCTGGGGCCTCCCG,"Intron (Rnf220-201/Rnf220, intron 2 of 14)",4,117271463,117497052,225590,2,Rnf220-201,181956,Rnf220-201;Rnf220-202;Rnf220-207,Rnf220;Rnf220;Rnf220,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,4,117314991,117315152,162,*,162,10,0.5,0.995085995,0.061728395,0.0000055,CpGisland,TRUE,U13,Hc-P
5987,cg17445358,-0.00000484,0.0000023,-2.101447014,0.036408633,loss,ns,-0.000000552,0.00000391,-0.140955499,0.887996647,neg,ns,-0.002459922,0.001146957,-2.144738753,0.03275076,neg,ns,1.484778611,0.0000258,0.0000394,0.653461001,0.513943506,pos,ns,0.957636477,Dab2ip,Dab2ip_threeUTR,2,35719876,35719925,35719876,35719877,50,+,CGTCTCCAACCCCCGAAAACAAGGACTTGTTTTTTGTCACAAGGTCCTCC,3' UTR,2,35558266,35730994,172729,1,Dab2ip-205,161610,Dab2ip-205;Dab2ip-206;Dab2ip-209;Dab2ip-211;Dab2ip-202;Dab2ip-207;Dab2ip-203;Dab2ip-201;Dab2ip-208;Dab2ip-204;Dab2ip-213,Dab2ip;Dab2ip;Dab2ip;Dab2ip;Dab2ip;Dab2ip;Dab2ip;Dab2ip;Dab2ip;Dab2ip;Dab2ip,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,9,12,69601,ENSMUSG00000026883,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10775,cg18977583,0.00000346,0.0000019,1.822975279,0.069270188,gain,ns,0.000000454,0.00000322,0.140914876,0.888028712,pos,ns,0.000396392,0.000944513,0.419678503,0.675011028,pos,ns,0.170689132,0.0000327,0.0000325,1.007873107,0.314301417,pos,ns,0.95561573,Vti1a,Vti1a_Exon,19,55380975,55381024,55380975,55380976,50,-,CGGAATGAGCTCCTGGGGGATGATGGGAATTCCTCAGAGAACCAGGTAGA,Promoter (<=1kb),19,55381014,55446979,65966,1,Vti1a-203,0,Vti1a-206;Vti1a-205;Vti1a-202;Vti1a-201;Vti1a-203,Vti1a;Vti1a;Vti1a;Vti1a;Vti1a,0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,32,53611,ENSMUSG00000024983,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8213,cg11356333,-0.0000218,0.00001,-2.175429898,0.030353207,loss,ns,0.0000024,0.0000171,0.140900009,0.888040447,pos,ns,0.008555942,0.004995298,1.71279914,0.08774938,pos,ns,1.056755944,-0.000291052,0.000171788,-1.694251351,0.091221868,neg,ns,0.376247772,Gm5246,Gm5246_Intergenic_downstream,19,44867704,44867753,44867752,44867753,50,-,AAAGTGAAGCTTGTGCATCATCATTAATGGGCTAAACAGCAGGGTCAGCG,Distal Intergenic,19,44851009,44851979,971,1,Gm5246-201,16744,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,20,383450,NA,mapped to different genes,19,44867743,44867851,109,*,109,11,0.651376147,0.984400657,0.100917431,9.65E-09,CpGisland,TRUE,U11,Tr-P
22081,cg04877519,-0.000001,0.000000818,-1.226754558,0.220845756,loss,ns,-0.000000196,0.00000139,-0.140820651,0.888103088,neg,ns,0.000613483,0.00040718,1.506662629,0.132915467,pos,ns,0.876424479,-0.000033,0.000014,-2.357488547,0.019020225,neg,ns,0.01916624,Wdr20,Wdr20_Exon,12,110738243,110738292,110738291,110738292,50,-,AGCTGTACTTCTATATCTACAAGGGGGTCCGCAAGGTACCGACCCGGGCG,Promoter (<=1kb),12,110737944,110804238,66295,1,Wdr20-205,299,Wdr20-205;Wdr20-204;Wdr20-203;Wdr20-201;Wdr20-202;Wdr20-207,Wdr20;Wdr20;Wdr20;Wdr20;Wdr20;Wdr20,0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,8,69641,ENSMUSG00000037957,conserved gene but different region,12,110737489,110738785,1297,*,1297,129,0.68080185,0.867167335,0.099460293,3.23E-97,CpGisland,TRUE,U1,Pr-A
4137,cg05478738,0.00000445,0.00000335,1.327807158,0.185218692,gain,ns,-0.000000802,0.0000057,-0.140804554,0.888115794,neg,ns,-0.001803927,0.001669706,-1.080386485,0.28080991,neg,ns,0.55158757,0.0000449,0.0000574,0.782368731,0.4345951,pos,ns,0.872840929,Syngap1,Syngap1_Exon,17,26958175,26958224,26958175,26958176,50,+,CGAATGTGCTGTGAGTTGGCCCTGTGCAAGGTGGTCAACTCCCACTGGTG,"Exon (Syngap1-204/Syngap1, exon 10 of 19)",17,26941253,26972434,31182,1,Syngap1-204,16922,Syngap1-204;Syngap1-213;Syngap1-208;Syngap1-202;Syngap1-207;Syngap1-203;Syngap1-201;Syngap1-212;Syngap1-214;Syngap1-211;Syngap1-205;Syngap1-206;Syngap1-209;Syngap1-210,Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1,0;0;0;0;0;0;0;0;0;0;-1614;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,18,240057,ENSMUSG00000067629,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21277,cg23961204,-0.0000183,0.00000592,-3.093555849,0.002157831,loss,ns,-0.00000142,0.0000101,-0.140803344,0.888116749,neg,ns,0.005300713,0.002948336,1.797866368,0.073171125,pos,ns,1.135660269,-0.000289718,0.000101393,-2.8573747,0.004560512,neg,ns,0.851528869,Bptf,Bptf_Exon,11,107062111,107062160,107062159,107062160,50,+,GGTAATTACTTTTCCTGCCATAGTGACTGGATTGCCTGTAATTTGGAACG,"Exon (Bptf-207/Bptf, exon 5 of 7)",11,107033081,107131922,98842,2,Bptf-201,69762,Bptf-201;Bptf-202;Bptf-203;Bptf-207,Bptf;Bptf;Bptf;Bptf,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,4,207165,ENSMUSG00000040481,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9426,cg07704742,0.0000284,0.00000577,4.921813895,0.0000014,gain,yes,0.00000138,0.0000098,0.140800117,0.888119297,pos,ns,0.000867687,0.002871472,0.302175014,0.762721283,pos,ns,0.117634135,0.000140831,0.0000987,1.426136062,0.154835312,pos,ns,0.723825057,Rpl17-ps6,Rpl17-ps6_Intergenic_downstream,13,48717260,48717309,48717260,48717261,50,-,CGCTGTTTACGTTATGTGATTGAGGGGAGAATTTGCCAAGACCAAAGGTT,Distal Intergenic,13,48763050,48763581,532,2,Rpl17-ps6-201,46321,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,4,100416501,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7003,cg07733153,-0.00000488,0.00000638,-0.763867057,0.445527454,loss,ns,-0.00000153,0.0000108,-0.140720973,0.888181769,neg,ns,-0.005522892,0.00317659,-1.73862289,0.083093929,neg,ns,1.080430703,0.00010071,0.000109243,0.921894225,0.35730066,pos,ns,0.81647655,Gm7382,Gm7382_Promoter,15,40533714,40533763,40533714,40533715,50,+,CGGGCTCCTTTGCTAGCCGATGATAAGCAGAATTTCCATGTTCTCTGCAT,Promoter (3-4kb),15,40537321,40538425,1105,1,Gm7382-201,-3558,Gm7382-201,Gm7382,-3558,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,17,22,664872,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14763,cg20455118,0.0000348,0.00000518,6.716634051,8.89E-11,gain,yes,0.00000124,0.00000881,0.140456668,0.888390405,pos,ns,0.004036159,0.00257989,1.564469091,0.118727661,pos,ns,0.925448089,-0.0000206,0.0000887,-0.232083074,0.816626623,neg,ns,0.056713246,Rnf165,Rnf165_fiveUTR,18,77565023,77565072,77565023,77565024,50,+,CGAAAGGAAAAAGCGATACCTCTGTTTCGCACAGAGCCAAACACTGGAAG,Promoter (<=1kb),18,77456110,77565136,109027,2,Rnf165-201,64,Rnf165-201;Rnf165-202;Rnf165-204;Rnf165-205;Rnf165-203,Rnf165;Rnf165;Rnf165;Rnf165;Rnf165,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,21,225743,ENSMUSG00000025427,conserved gene but different region,18,77564847,77565740,894,*,894,124,0.755033557,0.97880907,0.138702461,7.48E-114,CpGisland,TRUE,NA,NRS
6036,cg13280558,0.0000189,0.00000582,3.253442292,0.001265994,gain,ns,0.00000139,0.00000989,0.140362209,0.888464971,pos,ns,0.00748411,0.002897838,2.582653161,0.010262605,pos,ns,1.988742383,0.0000396,0.0000997,0.397677138,0.69114189,pos,ns,0.072299286,Cxxc5,Cxxc5_Intergenic_downstream,18,35887735,35887784,35887783,35887784,50,-,CAGGTGGAGCTGCGTCCTCATCTTTGTTCCCATCTGGAGCGCGTTTGGCG,Distal Intergenic,18,35854738,35858619,3882,1,Cxxc5-205,33046,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,49,67393,ENSMUSG00000046668,conserved gene but different region,18,35887596,35887837,242,*,242,21,0.702479339,0.70378064,0.08677686,5.36E-15,CpGisland,TRUE,U3,Pr-B
8742,cg08949650,-0.00000151,0.00000178,-0.851275399,0.395273476,loss,ns,-0.000000423,0.00000302,-0.140248771,0.88855452,neg,ns,-0.001223078,0.00088428,-1.383133922,0.167619147,neg,ns,0.775676375,0.00000278,0.0000304,0.091575774,0.927094247,pos,ns,0.961668553,Tmem63b,Tmem63b_Exon,17,45662884,45662933,45662932,45662933,50,-,AGGTGATACTGTAGGTCATGACCACCGTGAAGACGCACATCATCCAGGCG,"Exon (Tmem63b-201/Tmem63b, exon 20 of 24)",17,45660171,45686259,26089,2,Tmem63b-201,23326,Capn11-201;Capn11-202;Tmem63b-201;Tmem63b-208;Tmem63b-203;Tmem63b-207,Capn11;Capn11;Tmem63b;Tmem63b;Tmem63b;Tmem63b,-3559;-3587;0;0;3521;23040,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,12,224807,ENSMUSG00000036026,conserved gene and region,17,45662805,45662957,153,*,153,13,0.647058824,0.81583265,0.08496732,2.55E-09,CpGisland,TRUE,NA,NRS
24202,cg10888582,-0.00000186,0.00000104,-1.793805006,0.073818755,loss,ns,0.000000247,0.00000176,0.140155754,0.888627949,pos,ns,0.00033126,0.000515607,0.642465231,0.521046008,pos,ns,0.283123927,-0.00001,0.0000177,-0.566413541,0.571522518,neg,ns,0.972105219,Macf1,Macf1_Exon,4,123384757,123384806,123384805,123384806,50,-,TACCAGAACTTCTCTGCTAATTCAAGGACATCAAGAAATTTGATTTCTCG,"Exon (Macf1-203/Macf1, exon 70 of 98)",4,123349633,123684360,334728,2,Macf1-203,299554,Macf1-203;Macf1-209;Macf1-215;Macf1-218;Macf1-217;Macf1-201;Macf1-205;Macf1-202;Macf1-206;Macf1-210,Macf1;Macf1;Macf1;Macf1;Macf1;Macf1;Macf1;Macf1;Macf1;Macf1,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,16,11426,ENSMUSG00000028649,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6853,cg17940081,-0.0000265,0.00000608,-4.364785482,0.0000174,loss,ns,-0.00000145,0.0000103,-0.140145631,0.88863594,neg,ns,-0.001507868,0.00302574,-0.498346681,0.61859309,neg,ns,0.208594936,-0.000155459,0.000104055,-1.494007559,0.136190784,neg,ns,0.878694455,Gm6200,Gm6200_Intron,13,38798714,38798763,38798762,38798763,50,+,CACAAATCACATTTCATTTATCAGGCCCTACAGATGACAGGATATCATCG,"Intron (Gm46392-201/Gm46392-201, intron 3 of 3)",13,38674133,38674566,434,2,Gm6200-201,-124148,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,102634259,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20959,cg13156049,-0.00000243,0.00000174,-1.393990316,0.16431891,loss,ns,0.000000415,0.00000296,0.140103121,0.8886695,pos,ns,-0.00089539,0.000868128,-1.031402228,0.303156235,neg,ns,0.518333495,0.0000153,0.0000299,0.511192562,0.609580111,pos,ns,0.952244144,Tanc2,Tanc2_Exon,11,105867644,105867693,105867692,105867693,50,-,AGAATGGAGAACCTCTCCATGTTCCTAATCAAGCGCAGAGACATGACTCG,"Exon (Tanc2-202/Tanc2, exon 13 of 26)",11,105589991,105929304,339314,1,Tanc2-202,277653,Tanc2-202,Tanc2,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,15,20,77097,ENSMUSG00000053580,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4452,cg07786703,0.0000171,0.00000794,2.159282137,0.03159506,gain,ns,-0.00000189,0.0000135,-0.140099923,0.888672024,neg,ns,0.009718271,0.00395135,2.45948109,0.014459595,pos,ns,1.839843861,-0.000355175,0.000135887,-2.613762124,0.009392171,neg,ns,0.649884174,Cfap77,Cfap77_Intron,2,28944214,28944263,28944214,28944215,50,+,CGTGGGCCCAAAATGATCGCCCACTTGTCAGTGTAAAAGACCATTAAAAA,"Intron (Cfap77-203/Cfap77, intron 6 of 6)",2,28926949,29055024,128076,2,Cfap77-203,110761,Cfap77-203;Cfap77-204;Cfap77-205,Cfap77;Cfap77;Cfap77,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,6,329375,ENSMUSG00000079502,conserved gene and region,2,28943926,28944386,461,*,461,27,0.57483731,0.710688592,0.05856833,1.10E-14,CpGisland,TRUE,NA,NRS
5032,cg02811585,-0.00000305,0.00000122,-2.498760223,0.012980179,loss,ns,0.00000029,0.00000207,0.140091182,0.888678924,pos,ns,0.0015017,0.000607328,2.472633188,0.013948384,pos,ns,1.855476103,-0.0000335,0.0000209,-1.60208288,0.110155724,neg,ns,0.966432376,A1cf,A1cf_fiveUTR,19,31893087,31893136,31893135,31893136,50,+,ATAATCACTCTCAATGGAATCAAATCACAAATCCGGGGATGGATTGAGCG,5' UTR,19,31868764,31932848,64085,1,A1cf-204,24323,A1cf-204;A1cf-202;A1cf-201;A1cf-203;A1cf-205,A1cf;A1cf;A1cf;A1cf;A1cf,0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,2,69865,ENSMUSG00000052595,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23408,cg01301138,0.0000339,0.00000407,8.319245177,2.84E-15,gain,yes,0.000000969,0.00000691,0.140084564,0.888684149,pos,ns,0.006622276,0.002025502,3.269449773,0.001198762,pos,ns,2.921266853,-0.000157174,0.0000697,-2.256407351,0.024741497,neg,ns,0.081361544,Cdh13,Cdh13_fiveUTR,8,118283735,118283784,118283783,118283784,50,-,AGTTGGCTGGCTGGCGAGGCAGAGCCTCTCCTCAAAGCCTGGCTCCCACG,Promoter (<=1kb),8,118283755,118852758,569004,1,Cdh13-205,0,Cdh13-201;Cdh13-205;Cdh13-204;Cdh13-203;Cdh13-206,Cdh13;Cdh13;Cdh13;Cdh13;Cdh13,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,4,12554,ENSMUSG00000031841,conserved gene and region,8,118283569,118284088,520,*,520,36,0.607692308,0.75036075,0.069230769,7.96E-22,CpGisland,TRUE,NA,NRS
6582,cg13868888,0.00000725,0.00000539,1.344937786,0.179628441,gain,ns,0.00000128,0.00000916,0.140074634,0.888691988,pos,ns,-0.002072932,0.002683733,-0.772406247,0.440462324,neg,ns,0.356091234,0.0000928,0.0000923,1.005966547,0.31521622,pos,ns,0.098780784,Zfp536,Zfp536_Promoter,7,37773689,37773738,37773689,37773690,50,-,CGCGCCTGCCATTAGAGGCGACTTTATTTACAGACACTATTTAGGAGATC,Promoter (<=1kb),7,37569629,37773641,204013,2,Zfp536-208,-97,Zfp536-202;Zfp536-201;Zfp536-203;Zfp536-206;Zfp536-209;Zfp536-208;Zfp536-205;Zfp536-207;Zfp536-210,Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536,0;0;0;0;0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,4,112,243937,ENSMUSG00000043456,conserved gene and region,7,37773505,37773708,204,*,204,20,0.558823529,1.259259259,0.098039216,2.20E-15,CpGisland,TRUE,U13,Hc-P
2708,cg11348552,-0.0000353,0.0000154,-2.283947362,0.0230506,loss,ns,0.00000367,0.0000262,0.13993479,0.888802386,pos,ns,0.008388569,0.007684892,1.091566315,0.275871407,pos,ns,0.559293311,-0.00090692,0.000264283,-3.431628676,0.000681387,neg,ns,0.356197823,Kat6b,Kat6b_fiveUTR,14,21500852,21500901,21500852,21500853,50,+,CGACTCGGGTTTAATGAGACTCCATTGGGCTGTAATCAGTGTCATGTCGG,Promoter (<=1kb),14,21500853,21621401,120549,1,Kat6b-202,0,Kat6b-209;Kat6b-211;Kat6b-206;Kat6b-204;Kat6b-201;Kat6b-207;Kat6b-202;Kat6b-208;Kat6b-212;Kat6b-210,Kat6b;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,7,21,54169,ENSMUSG00000021767,conserved gene and region,14,21500601,21500853,253,*,253,23,0.660079051,0.913214062,0.090909091,7.47E-17,CpGisland,TRUE,U1,Pr-A
11698,cg23745624,0.0000243,0.00000354,6.868833642,3.55E-11,gain,yes,0.000000842,0.00000602,0.139925422,0.888809782,pos,ns,0.002938063,0.001762412,1.667069311,0.09651053,pos,ns,1.015425301,-0.0000565,0.0000606,-0.931436217,0.352352775,neg,ns,0.079232081,Spock2,Spock2_Exon,10,60106556,60106605,60106604,60106605,50,-,AGGAGGGCGAGACCCCCGGCAATTTCATGGAGGACGAGCAATGGCTGTCG,Promoter (<=1kb),10,60106219,60127338,21120,1,Spock2-202,337,Spock2-202;Spock2-201;Spock2-203,Spock2;Spock2;Spock2,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,94214,ENSMUSG00000058297,conserved gene and region,10,60106466,60107061,596,*,596,60,0.708053691,0.803667745,0.100671141,6.32E-46,CpGisland,TRUE,U3,Pr-B
13590,cg12203266,-0.0000134,0.00000646,-2.070576924,0.039225872,loss,ns,-0.00000154,0.000011,-0.139912196,0.888820223,neg,ns,-0.007432051,0.003217546,-2.309851039,0.021553113,neg,ns,1.666489996,0.0000814,0.000110651,0.735541539,0.462565882,pos,ns,0.721741387,Rps18-ps1,Rps18-ps1_Intergenic_upstream,4,71484499,71484548,71484499,71484500,50,-,CGAGGTGTAATCATTCTGGTTGAGAGAGAAAAAGATTAAGAGGGTGCAAC,Distal Intergenic,4,71370738,71371196,459,2,Rps18-ps1-201,-113352,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,5,100039979,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1185,cg17072671,0.0000129,0.00000623,2.069129133,0.039362444,gain,ns,-0.00000148,0.0000106,-0.139858999,0.88886222,neg,ns,0.014683473,0.003103099,4.731873284,0.00000339,pos,ns,5.470300688,-0.000511641,0.000106715,-4.794448356,0.00000254,neg,ns,0.564788831,Gm14512,Gm14512_Intergenic_downstream,X,12000594,12000643,12000594,12000595,50,+,CGAATGTGATAATATTGGCATCTAACCTTCTAGTGTTTGAGTAATTCGTT,Distal Intergenic,20,11984468,11984697,230,1,Gm14512-201,16126,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,22,22,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16243,cg06458329,0.00000957,0.00000526,1.819315427,0.069827867,gain,ns,-0.00000125,0.00000894,-0.139748639,0.888949345,neg,ns,-0.002155534,0.002618493,-0.823196387,0.411029131,neg,ns,0.386127398,-0.0000351,0.00009,-0.390267983,0.696606423,neg,ns,0.779669099,Gm26913,Gm26913_Intergenic_downstream,13,84639546,84639595,84639594,84639595,50,+,GAAGACAGAAAATTGCCCCCTTTGTAAATGCTAATCTCACCACTCCTTCG,Distal Intergenic,13,84690210,84690941,732,2,Gm26913-201,51346,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,9,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6994,cg08757431,-0.0000421,0.0000125,-3.371036025,0.000843667,loss,ns,0.00000297,0.0000212,0.139718578,0.888973078,pos,ns,-0.015310128,0.006221918,-2.460676713,0.014412446,neg,ns,1.841262311,0.0000962,0.000213971,0.449796534,0.653171507,pos,ns,0.664058844,Gm12134,Gm12134_Intergenic_downstream,11,40453174,40453223,40453174,40453175,50,-,CGTTTTATGCTTGGAAAGTTGTGTTATATATACATGTATTTTAGTCCAAA,Distal Intergenic,11,40429537,40430056,520,1,Gm12134-201,23686,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,100039241,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15565,cg06761799,0.00000233,0.00000191,1.219883268,0.223436365,gain,ns,-0.000000452,0.00000324,-0.139711003,0.888979058,neg,ns,0.001016383,0.000948789,1.071242421,0.284893733,pos,ns,0.545317104,-0.0000424,0.0000326,-1.298952393,0.19492558,neg,ns,0.966542138,Zc3h7b,Zc3h7b_threeUTR,15,81795463,81795512,81795511,81795512,50,+,TATATATGTCGCCCCCGTGATGCATATATACACAGGTATTAAATATATCG,3' UTR,15,81745057,81796260,51204,1,Zc3h7b-201,50406,Zc3h7b-201,Zc3h7b,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,5,20286,ENSMUSG00000022390,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10248,cg16776319,0.0000517,0.00000676,7.646024623,2.62E-13,gain,yes,-0.0000016,0.0000115,-0.139708171,0.888981293,neg,ns,0.009657563,0.003365014,2.869991742,0.004387016,pos,ns,2.357830734,-0.000231532,0.000115723,-2.000754739,0.046290512,neg,ns,0.088358774,Hoxa13,Hoxa13_Intergenic_upstream,6,52270977,52271026,52271025,52271026,50,+,GTCTGAGCACACACCTCGGATTAAACTTTAATCGGCTGCAGTCAAGGTCG,Distal Intergenic,6,52258853,52260880,2028,2,Hoxa13-201,-10097,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,12,15398,ENSMUSG00000038203,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
22463,cg11527177,0.0000717,0.0000162,4.424434951,0.0000134,gain,ns,0.00000384,0.0000275,0.139651737,0.889025847,pos,ns,0.043321699,0.008063626,5.372483707,0.000000153,pos,ns,6.815897263,-0.000414283,0.000277307,-1.493948,0.136206346,neg,ns,0.724886128,Wwox,Wwox_Intron,8,114731719,114731768,114731767,114731768,50,-,GTGATTGATCTTTTATTCAGTAGCTAACGAGGGCTGTGATTCTATTAGCG,"Intron (Wwox-201/Wwox, intron 8 of 8)",8,114439655,115352708,913054,1,Wwox-201,292064,Wwox-201;Wwox-203;Wwox-204;Wwox-209,Wwox;Wwox;Wwox;Wwox,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,32,32,80707,ENSMUSG00000004637,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20760,cg05722263,0.0000275,0.00000595,4.619809536,0.00000564,gain,ns,-0.00000141,0.0000101,-0.139585656,0.889078017,neg,ns,0.007988074,0.002961408,2.697390682,0.007370936,pos,ns,2.132477331,-0.000204458,0.000101843,-2.00758981,0.045554431,neg,ns,0.026536464,Rgs7bp,Rgs7bp_fiveUTR,13,105054183,105054232,105054183,105054184,50,+,CGCTTTTTGCGCCCATTCGGTGCAGAACTCATGCATACACATCCACCAAG,Promoter (<=1kb),13,104945904,105054930,109027,2,Rgs7bp-201,698,Rgs7bp-201,Rgs7bp,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,7,52882,ENSMUSG00000021719,conserved gene but different region,13,105054061,105054769,709,*,709,77,0.682651622,0.937379808,0.108603667,1.56E-61,CpGisland,TRUE,U3,Pr-B
4987,cg09019938.2,0.0000219,0.00000941,2.326358015,0.020643869,gain,ns,0.00000223,0.000016,0.139453543,0.88918232,pos,ns,0.012959271,0.004682104,2.767830824,0.00598243,pos,ns,2.223122383,-0.000245516,0.000161017,-1.524781646,0.128333085,neg,ns,0.140568545,Prkg1,Prkg1_Exon,19,31664133,31664182,31664133,31664134,50,-,CGGTACTTGTCCAGCTCGTTCTGCAGCTTCTGGATCAGTTCGTCCTTCTG,"Exon (Prkg1-202/Prkg1, exon 1 of 18)",19,30564489,31765033,1200545,2,Prkg1-201,100851,Prkg1-201;Prkg1-202,Prkg1;Prkg1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,13,19091,ENSMUSG00000052920,conserved gene and region,19,31664002,31664401,400,*,400,33,0.635,0.825774163,0.0825,1.52E-22,CpGisland,TRUE,U3,Pr-B
20267,cg06368141,-0.000000519,0.000000859,-0.604437917,0.545994651,loss,ns,-0.000000203,0.00000146,-0.139323702,0.88928483,neg,ns,-0.000793619,0.00042761,-1.855942457,0.064410591,neg,ns,1.191042718,0.0000147,0.0000147,1.00102507,0.317595408,pos,ns,0.020099289,Hoxc5,Hoxc5_fiveUTR,15,102981470,102981519,102981518,102981519,50,+,AAGCCCCTGCGCATTGATCCGCGCCGTATTTTTGGGTAAATACGATCACG,5' UTR,15,102967443,103015676,48234,1,Hoxc5-202,14027,Hoxc5-202;Hoxc9-202;Hoxc9-201,Hoxc5;Hoxc9;Hoxc9,0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,13,134,15424,ENSMUSG00000022485,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16246,cg15428228,0.0000986,0.0000146,6.754513496,7.09E-11,gain,yes,-0.00000345,0.0000248,-0.13920921,0.889375224,neg,ns,0.029462829,0.007261762,4.057256053,0.0000629,pos,ns,4.201381861,-0.000550128,0.000249731,-2.202880523,0.028338708,neg,ns,0.399185093,Lhx1,Lhx1_Intergenic_upstream,11,84653875,84653924,84653875,84653876,50,+,CGAATGATGTCAAGGATTTGTCACCATGGCTTATGAATGACAAAAACGCT,Distal Intergenic,11,84518284,84525535,7252,2,Lhx1-201,-128340,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,20,23,16869,ENSMUSG00000018698,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7060,cg25140607,0.0000563,0.00000486,11.58258903,5.08E-26,gain,yes,0.00000115,0.00000826,0.13916622,0.889409166,pos,ns,0.010658117,0.002421129,4.402127208,0.0000148,pos,ns,4.830616463,-0.000166511,0.0000833,-1.999834714,0.046390355,neg,ns,0.071649529,Tfap2a,Tfap2a_Exon,13,40728704,40728753,40728752,40728753,50,-,TGTAGGGAGATTGACCTACAGTGCCCAGCTGGGGCAACCGTGCCGTCCCG,"Exon (Tfap2a-201/Tfap2a, exon 2 of 7)",13,40715302,40730443,15142,2,Tfap2a-201,1690,Tfap2a-201;Tfap2a-202;Tfap2a-205;Tfap2a-203;Tfap2a-209;Tfap2a-208;Tfap2a-206;Tfap2a-204;Tfap2a-207,Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,13,57,21418,ENSMUSG00000021359,mapped to different genes,13,40728742,40728818,77,*,77,8,0.61038961,1.241935484,0.103896104,0.00000163,CpGisland,TRUE,U13,Hc-P
11439,cg13896583,-0.0000115,0.0000108,-1.069629031,0.285618457,loss,ns,-0.00000255,0.0000183,-0.139105529,0.889457084,neg,ns,-0.008749284,0.005367568,-1.630027626,0.104111268,neg,ns,0.982502264,0.0000769,0.00018459,0.416779131,0.677128412,pos,ns,0.712279053,Islr,Islr_Exon,9,58157267,58157316,58157315,58157316,50,-,TTGCCAAAGTCGGGGATAAGCAGGCTGCCATTGGCAAAGGCCTGGAAGCG,"Exon (Islr-201/Islr, exon 2 of 2)",9,58156268,58159221,2954,2,Islr-201,1905,Islr-201;Islr-202;Islr-203;Stra6-202;Stra6-201;Stra6-214;Stra6-213,Islr;Islr;Islr;Stra6;Stra6;Stra6;Stra6,0;0;0;28179;27918;23192;22602,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,26968,ENSMUSG00000037206,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5156,cg01575688,-0.00000598,0.00000266,-2.246258996,0.025391269,loss,ns,-0.000000629,0.00000452,-0.139039014,0.889509601,neg,ns,0.000992778,0.001324522,0.749537077,0.454101973,pos,ns,0.342846611,-0.0000753,0.0000456,-1.652452102,0.099454841,neg,ns,0.931462581,Bach2,Bach2_Exon,4,32563174,32563223,32563174,32563175,50,-,CGCCCTGTTCCCAGGGAGCCAGATTCCTTGCCACAGAACATCAGGAACCA,"Exon (Bach2-202/Bach2, exon 5 of 7)",4,32238804,32586104,347301,1,Bach2-202,324370,Bach2-202;Bach2-201;Bach2-207,Bach2;Bach2;Bach2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,14,12014,ENSMUSG00000040270,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27182,cg05902128,0.0000196,0.00000593,3.298991946,0.00108331,gain,ns,0.0000014,0.0000101,0.139014967,0.889528586,pos,ns,0.007160141,0.002950161,2.427033913,0.015792435,pos,ns,1.801550905,-0.00024649,0.000101456,-2.429527024,0.015686303,neg,ns,0.057053761,Mafb,Mafb_Exon,2,160365800,160365849,160365800,160365801,50,+,CGTCTCTCTCGCGGGCCAGCCGGGACACCTCCTGCTTAAGCTGCTCCACC,"Exon (Mafb-201/Mafb, exon 1 of 1)",2,160363703,160367065,3363,2,Mafb-201,1216,Mafb-201,Mafb,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,14,22,16658,ENSMUSG00000074622,conserved gene and region,2,160365737,160365821,85,*,85,9,0.670588235,0.942118227,0.105882353,0.000000223,CpGisland,TRUE,U3,Pr-B
21338,cg09978183,-0.0000616,0.0000109,-5.668857667,3.29E-08,loss,yes,-0.00000256,0.0000185,-0.138860469,0.889650572,neg,ns,-0.010415587,0.005408782,-1.925680818,0.055058683,neg,ns,1.259174184,0.0000783,0.000186008,0.420934,0.674094952,pos,ns,0.895072988,Lin7a,Lin7a_fiveUTR,10,107380234,107380283,107380234,107380235,50,-,CGTGTGTACACTGTAAGAGAATTTAGACATCAGTGGCAGCCCAGAGTCTA,5' UTR,10,107271686,107421474,149789,1,Lin7a-201,108548,Lin7a-201;Lin7a-202;Lin7a-203,Lin7a;Lin7a;Lin7a,0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,4,108030,ENSMUSG00000019906,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11188,cg06782921,-0.00000239,0.00000478,-0.499561757,0.617738061,loss,ns,-0.00000113,0.00000812,-0.13882851,0.889675806,neg,ns,-0.002559722,0.002379881,-1.075567162,0.28295726,neg,ns,0.548279159,0.00000799,0.0000818,0.09767294,0.922255123,pos,ns,0.910937564,Gm13527,Gm13527_Intergenic_upstream,2,56912702,56912751,56912750,56912751,50,+,AGAGCACCCACTTCAATTCAAGAAGATTCCAGCTGACTATCCAGTTATCG,Distal Intergenic,2,57079748,57080438,691,1,Gm13527-201,-166997,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,13,13,227920,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2174,cg22523886,0.0000138,0.00000726,1.897472408,0.058694638,gain,ns,-0.00000171,0.0000123,-0.138767599,0.889723899,neg,ns,-0.009088889,0.003614449,-2.514598827,0.012422757,neg,ns,1.905782017,0.0000687,0.000124301,0.552482222,0.581016133,pos,ns,0.80207222,Ccdc28a,Ccdc28a_Exon,10,18219534,18219583,18219582,18219583,50,-,TTATCCTCAGGAAGTTCCTCTAACTCCCCATAGAGCTCCAAATTCAAGCG,"Exon (Ccdc28a-202/Ccdc28a, exon 4 of 6)",10,18213676,18234996,21321,2,Ccdc28a-202,15413,Ccdc28a-202;Ccdc28a-205;Ccdc28a-206;Ccdc28a-204;Ccdc28a-203;Ccdc28a-201,Ccdc28a;Ccdc28a;Ccdc28a;Ccdc28a;Ccdc28a;Ccdc28a,0;0;-3199;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,215814,ENSMUSG00000059554,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6380,cg24318948,-0.0000134,0.0000026,-5.162290461,0.000000437,loss,yes,0.000000614,0.00000442,0.138725895,0.889756828,pos,ns,-0.001147433,0.001296135,-0.885272411,0.376695875,neg,ns,0.424009135,0.0000411,0.0000446,0.922708868,0.356876528,pos,ns,0.958946416,Pknox2,Pknox2_Intron,9,37067663,37067712,37067663,37067664,50,+,CGCAATTGTTTCAGAGCCATTACAGAAAGACAATTACAAGGAAGCGGGGA,"Intron (Pknox2-207/Pknox2, intron 1 of 10)",9,36890982,37083309,192328,2,Pknox2-207,15597,Pknox2-207;Pknox2-201;Pknox2-202;Pknox2-206;Pknox2-204;Pknox2-205;Pknox2-208;Pknox2-210;Pknox2-209;Pknox2-212;Pknox2-211,Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,47,208076,ENSMUSG00000035934,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
836,cg01241756,-0.0000349,0.00000928,-3.756189878,0.000206042,loss,ns,-0.00000219,0.0000158,-0.138620807,0.889839805,neg,ns,-0.012372795,0.004621175,-2.677413132,0.007814441,neg,ns,2.107102065,0.000240548,0.000158922,1.513624544,0.131139932,pos,ns,0.83604338,Nxph1,Nxph1_Intergenic_upstream,6,8904415,8904464,8904415,8904416,50,+,CGGAAGCCTGACAGAATGGCTAAAAGGATGATCAATTTCAAGTGTCACTC,Distal Intergenic,6,8948431,8952430,4000,1,Nxph1-203,-43967,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,12,18231,ENSMUSG00000046178,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14137,cg07517669,0.0000605,0.00000428,14.13048376,2.45E-35,gain,yes,0.00000101,0.00000728,0.13855387,0.889892658,pos,ns,0.008271469,0.002132005,3.879666265,0.000127782,pos,ns,3.893529074,0.000000649,0.0000733,0.008854398,0.992941,pos,ns,0.114264106,Hoxd10,Hoxd10_Exon,2,74694263,74694312,74694263,74694264,50,+,CGACAGGCAGGTCAAGATTTGGTTTCAAAACCGCCGAATGAAACTCAAGA,"Exon (Hoxd10-201/Hoxd10, exon 2 of 2)",2,74691924,74695105,3182,1,Hoxd10-201,2339,Hoxd10-201;Hoxd9-201,Hoxd10;Hoxd9,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,21,24,15430,ENSMUSG00000050368,conserved gene and region,2,74694222,74694348,127,*,127,12,0.519685039,1.400735294,0.094488189,3.59E-09,CpGisland,TRUE,U13,Hc-P
362,cg07456629,-0.00000763,0.00000207,-3.678753569,0.000276257,loss,ns,0.000000488,0.00000352,0.138516904,0.889921846,pos,ns,-0.002062095,0.001032484,-1.997216098,0.046675532,neg,ns,1.330910727,0.0000282,0.0000355,0.793600823,0.428034872,pos,ns,0.949594925,Zfhx4,Zfhx4_Exon,3,5242333,5242382,5242333,5242334,50,+,CGATCAGGCTTTCCCAAATACCTCAGCATTAGCAGGAGTTGGTCCTGTGT,"Exon (Zfhx4-203/Zfhx4, exon 2 of 11)",3,5218526,5413165,194640,1,Zfhx4-203,23807,Zfhx4-203;Zfhx4-202;Zfhx4-201;Zfhx4-204;Zfhx4-205,Zfhx4;Zfhx4;Zfhx4;Zfhx4;Zfhx4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,23,77,80892,ENSMUSG00000025255,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13551,cg20352439,-0.00000437,0.00000123,-3.548056927,0.000448131,loss,ns,0.00000029,0.00000209,0.138501026,0.889934384,pos,ns,-0.000212483,0.000613556,-0.346313218,0.729342269,neg,ns,0.137068616,0.0000164,0.0000211,0.776701098,0.437927371,pos,ns,0.969105675,Dync1i2,Dync1i2_Intron,2,71245276,71245325,71245276,71245277,50,-,CGTCATTATCATTTTGATTAAGTTGGAGGTTGTATCATTGTGTGCATTAT,"Intron (Dync1i2-207/Dync1i2, intron 6 of 16)",2,71211706,71263298,51593,1,Dync1i2-207,33570,Dync1i2-207;Dync1i2-205;Dync1i2-206;Dync1i2-204;Dync1i2-211;Dync1i2-201;Dync1i2-208;Dync1i2-202;Dync1i2-203;Dync1i2-209,Dync1i2;Dync1i2;Dync1i2;Dync1i2;Dync1i2;Dync1i2;Dync1i2;Dync1i2;Dync1i2;Dync1i2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,6,13427,ENSMUSG00000027012,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12124,cg25321313,0.0000354,0.00000664,5.327249941,0.000000192,gain,yes,-0.00000156,0.0000113,-0.138451434,0.889973542,neg,ns,0.000424614,0.003304586,0.128492435,0.897842604,pos,ns,0.046799791,-0.00000474,0.000113644,-0.041712693,0.966754588,neg,ns,0.834493633,Aopep,Aopep_Exon,13,63033089,63033138,63033089,63033090,50,+,CGTTGCCATGTCAACATGGCAGGCTACAGTTCGAGCAGCTGCATCTTTTG,"Exon (Aopep-202/Aopep, exon 2 of 15)",13,63014934,63299656,284723,1,Aopep-202,18155,Aopep-202;Aopep-201;Aopep-208,Aopep;Aopep;Aopep,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,7,72061,ENSMUSG00000021458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18467,cg08073580,0.000000212,0.00000407,0.052081379,0.958497394,gain,ns,-0.000000958,0.00000692,-0.138437351,0.889984662,neg,ns,0.000461751,0.002027259,0.227771143,0.819974315,pos,ns,0.086199751,-0.000062,0.0000697,-0.889856077,0.374233204,neg,ns,0.949078182,Cnot1,Cnot1_fiveUTR,8,95788719,95788768,95788767,95788768,50,+,AGTCAAGATTCATTGCTGGTTGGGGCGGAAGCAGGCGGCCGAGCCCGGCG,5' UTR,8,95719451,95807462,88012,2,Cnot1-202,18694,Cnot1-202;Cnot1-201;Cnot1-203;Cnot1-216;Cnot1-217;Cnot1-207;Cnot1-209,Cnot1;Cnot1;Cnot1;Cnot1;Cnot1;Cnot1;Cnot1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,24,234594,ENSMUSG00000036550,conserved gene and region,8,95788711,95788768,58,*,58,7,0.672413793,1.16,0.120689655,0.00000369,CpGisland,TRUE,U10,Tr-S
14696,cg20123148,0.0000103,0.00000583,1.774564485,0.076951172,gain,ns,0.00000137,0.0000099,0.138436915,0.889985006,pos,ns,-0.003764337,0.002900491,-1.29782743,0.195311477,neg,ns,0.709272235,0.000110674,0.0000997,1.109540091,0.268057223,pos,ns,0.763630925,2210408I21Rik,2210408I21Rik_Intron,13,77328045,77328094,77328045,77328046,50,+,CGAGCAATTAGGTGTGTACTGGCCTGAGGCAGCGTCTGCTGGCAGCTAAG,"Intron (2210408I21Rik-201/2210408I21Rik, intron 17 of 19)",13,77135540,77613784,478245,1,2210408I21Rik-201,192505,2210408I21Rik-201,2210408I21Rik,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,19,20,72371,ENSMUSG00000071252,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8261,cg17148169,-0.000034,0.00000911,-3.734403948,0.000223874,loss,ns,0.00000214,0.0000155,0.138428654,0.88999153,pos,ns,0.000769905,0.004532835,0.169850699,0.865238342,pos,ns,0.062864244,-0.000184864,0.000155884,-1.185911154,0.236565555,neg,ns,0.394788559,Zcchc7,Zcchc7_Intron,4,44905872,44905921,44905872,44905873,50,+,CGATCTAGGTCATGGCCTTCACTGTCTGTGATTGTGAACATATTTCCTGA,"Intron (Zcchc7-203/Zcchc7, intron 5 of 8)",4,44756568,44932203,175636,1,Zcchc7-203,149304,Zcchc7-203;Zcchc7-207;Zcchc7-205;Zcchc7-201;Zcchc7-202,Zcchc7;Zcchc7;Zcchc7;Zcchc7;Zcchc7,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,27,27,319885,ENSMUSG00000035649,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
4150,cg13545326,0.0000129,0.00000661,1.957100642,0.051232849,gain,ns,-0.00000155,0.0000112,-0.138373301,0.890035237,neg,ns,-0.006239707,0.003289877,-1.896638192,0.058805145,neg,ns,1.230584676,0.000207973,0.000113139,1.838217973,0.066986941,pos,ns,0.864078959,Syngap1,Syngap1_threeUTR,17,26971972,26972021,26971972,26971973,50,+,CGGGGCCAAATTTATACTTATATAAAAGTTGTAAATATGTGAAATTTTAT,3' UTR,17,26941253,26972434,31182,1,Syngap1-204,30719,Gm50253-201;Syngap1-204;Syngap1-213;Syngap1-208;Syngap1-202;Syngap1-207;Syngap1-203;Syngap1-201;Syngap1-212;Syngap1-214;Syngap1-206;Syngap1-209;Syngap1-210;Zbtb9-201;Zbtb9-202,Gm50253;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Zbtb9;Zbtb9,-1196;0;0;0;0;0;0;0;0;0;0;0;0;-1146;-1196,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,18,240057,ENSMUSG00000067629,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27436,cg15679520,0.000000352,0.00000144,0.245449357,0.806270929,gain,ns,0.000000337,0.00000244,0.138342305,0.890059712,pos,ns,-0.000241208,0.000714345,-0.337663398,0.73584539,neg,ns,0.133213426,-0.00000551,0.0000246,-0.224411034,0.822585323,neg,ns,0.965399772,Pbx1,Pbx1_Intron,1,168182950,168182999,168182950,168182951,50,+,CGATTTCACTCTGTGCGACATAGCTTGTCGCTATGAATTTTCATGCTAGT,"Intron (Pbx1-208/Pbx1, intron 7 of 7)",1,168119364,168432270,312907,2,Pbx1-208,249271,Pbx1-208;Pbx1-205;Pbx1-206;Pbx1-201;Pbx1-202,Pbx1;Pbx1;Pbx1;Pbx1;Pbx1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,84,18514,ENSMUSG00000052534,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5525,cg16446865,-0.0000045,0.00000193,-2.328435067,0.020531875,loss,ns,0.000000454,0.00000328,0.138335942,0.890064737,pos,ns,-0.000199187,0.000961977,-0.207060366,0.836098658,neg,ns,0.077742474,0.0000448,0.0000331,1.354372401,0.176603952,pos,ns,0.956598626,Pbx3,Pbx3_Intron,2,34181872,34181921,34181920,34181921,50,-,CCAGCAGCCTGGGGAAGCTTTAGCAAGTGGATTTGCTTGACATCAGATCG,"Intron (Pbx3-202/Pbx3, intron 5 of 7)",2,34171457,34372038,200582,2,Pbx3-202,190117,Pbx3-202;Pbx3-201;Pbx3-210;Pbx3-206;Pbx3-207;Pbx3-209,Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,82,18516,ENSMUSG00000038718,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19870,cg21627130,0.0000709,0.00000922,7.684437026,2.04E-13,gain,yes,0.00000217,0.0000157,0.138295795,0.890096438,pos,ns,0.026174301,0.004589668,5.702874959,2.75E-08,pos,ns,7.561030914,-0.000455162,0.000157838,-2.883720916,0.004205075,neg,ns,0.701149764,Gjb1,Gjb1_Exon,X,101384872,101384921,101384872,101384873,50,+,CGGCCACCGCCTCTCACCTGAATACAAGCAGAATGAGATCAACAAGCTGC,"Exon (Gjb1-202/Gjb1, exon 2 of 2)",20,101376378,101385629,9252,1,Gjb1-202,8494,Gjb1-202;Gjb1-201;Gjb1-203,Gjb1;Gjb1;Gjb1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,14618,ENSMUSG00000047797,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23471,cg18301087,-0.00000257,0.00000173,-1.48587021,0.138329699,loss,ns,-0.000000405,0.00000294,-0.137955586,0.890365083,neg,ns,-0.002013962,0.000860544,-2.340334963,0.01990044,neg,ns,1.701137314,0.0000396,0.0000296,1.339016614,0.181546273,pos,ns,0.958569912,Clasp1,Clasp1_threeUTR,1,118543189,118543238,118543189,118543190,50,+,CGCTCATATGGCTCCAGGAATGGTGGCATTCCCCATTATCTGCGGCAGAC,3' UTR,1,118389058,118609432,220375,1,Clasp1-201,154131,Clasp1-201;Clasp1-202;Clasp1-204;Clasp1-218;Clasp1-219;Clasp1-208;Clasp1-216;Clasp1-203;Clasp1-214;Clasp1-220;Clasp1-212;Clasp1-206;Clasp1-205;Clasp1-210;Clasp1-224;Clasp1-221;Clasp1-230;Clasp1-226;Clasp1-209;Clasp1-222,Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1;Clasp1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;-3973;-4739,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,8,76707,ENSMUSG00000064302,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14208,cg05533095,-0.000000365,0.000000451,-0.809363852,0.418926663,loss,ns,-0.000000106,0.000000766,-0.137891105,0.890416002,neg,ns,0.000464844,0.000224336,2.072085636,0.039083983,pos,ns,1.408001187,-0.0000172,0.00000771,-2.231823666,0.026341066,neg,ns,0.00904423,Mnt,Mnt_Exon,11,74831342,74831391,74831342,74831343,50,-,CGCTACTGGAGGCGGCCCGCTTCCTGGAATGGCAAGCGCAGCAACAACAG,Promoter (<=1kb),11,74830920,74845725,14806,1,Mnt-201,422,Mettl16-205;Mnt-201;Mnt-203,Mettl16;Mnt;Mnt,60512;0;-4935,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,17,17428,ENSMUSG00000000282,conserved gene and region,11,74831171,74831413,243,*,243,27,0.720164609,0.867168914,0.111111111,3.45E-22,CpGisland,TRUE,U1,Pr-A
1295,cg13917460,-0.00000289,0.00000184,-1.570285316,0.117368843,loss,ns,-0.000000432,0.00000313,-0.137863825,0.890437544,neg,ns,0.00058609,0.000917398,0.638860903,0.523385156,pos,ns,0.281178599,-0.0000127,0.0000315,-0.40118837,0.688557838,neg,ns,0.964285906,Fezf2,Fezf2_Intergenic_downstream,14,12331846,12331895,12331894,12331895,50,-,CCAATATAACTGTTAAACAGTCACATTTAAGTCAAGGATGTGTTGCTTCG,Distal Intergenic,14,12342094,12345844,3751,2,Fezf2-203,13998,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,21,45,54713,ENSMUSG00000021743,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4962,cg19300725,-0.000000369,0.00000236,-0.156198353,0.875978343,loss,ns,0.000000552,0.00000402,0.137450352,0.890764064,pos,ns,0.00020605,0.001176368,0.175157685,0.861070081,pos,ns,0.064961501,0.000029,0.0000405,0.71610469,0.474465788,pos,ns,0.056979201,Pknox1,Pknox1_fiveUTR,17,31564857,31564906,31564857,31564858,50,-,CGCTTGTCAGTGTGATGAAGATTGGCACCCAGGTAAGCTGTCACTCAACC,Promoter (<=1kb),17,31564862,31605492,40631,1,Pknox1-202,0,Pknox1-201;Pknox1-206;Pknox1-212;Pknox1-209;Pknox1-202;Pknox1-208,Pknox1;Pknox1;Pknox1;Pknox1;Pknox1;Pknox1,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,8,8,18771,ENSMUSG00000006705,conserved gene and region,17,31564426,31564858,433,*,433,56,0.769053118,0.874873719,0.129330254,1.05E-49,CpGisland,TRUE,U1,Pr-A
5786,cg27005643,0.000000695,0.00000132,0.525081868,0.599901603,gain,ns,0.000000309,0.00000225,0.137324269,0.890863635,pos,ns,0.000267399,0.000658986,0.405772833,0.685189447,pos,ns,0.164189334,0.00000937,0.0000227,0.413608154,0.679447084,pos,ns,0.958493088,Fam53c,Fam53c_threeUTR,18,34768498,34768547,34768498,34768499,50,+,CGCAGGTGCCTCACCAGAGCCCCCCAAAGCGGGTCTCCAGCCTCAGGTTC,3' UTR,18,34758906,34773760,14855,1,Fam53c-201,9592,Fam53c-201;Fam53c-202;Fam53c-203,Fam53c;Fam53c;Fam53c,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,2,66306,ENSMUSG00000034300,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7148,cg18256112,0.0000134,0.00000258,5.193955256,0.000000374,gain,yes,0.000000602,0.00000438,0.137238293,0.890931534,pos,ns,0.007062785,0.001284141,5.500009415,7.95E-08,pos,ns,7.099478757,-0.000200716,0.0000442,-4.545055544,0.00000788,neg,ns,0.090100251,Lcor,Lcor_Intron,19,41483900,41483949,41483900,41483901,50,+,CGTTGGAAGGAATTATGCAAATCCTGCTTTCTGGTGTCCATTCAGCGGCA,"Intron (Lcor-201/Lcor, intron 2 of 7)",19,41482637,41562261,79625,1,Lcor-201,1263,Lcor-201;Lcor-204;Lcor-206,Lcor;Lcor;Lcor,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,25,212391,ENSMUSG00000025019,mapped to different genes,19,41483696,41483901,206,*,206,16,0.645631068,0.745701358,0.077669903,8.92E-11,CpGisland,TRUE,U1,Pr-A
21874,cg00153387,-0.0000134,0.00000591,-2.271342021,0.023811604,loss,ns,0.00000138,0.00001,0.137209229,0.890954487,pos,ns,-0.004933022,0.002943113,-1.676124007,0.094722085,neg,ns,1.023548752,0.0000412,0.000101213,0.407258779,0.684099007,pos,ns,0.859455089,Pmfbp1,Pmfbp1_Intergenic_upstream,8,109436763,109436812,109436811,109436812,50,+,TGTTTTCCTGGTTTCCATTTTGTATCCTAAAATATTCACTCCAAGTTCCG,Distal Intergenic,8,109494027,109542640,48614,1,Pmfbp1-201,-57215,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,4,56523,ENSMUSG00000031727,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7581,cg27171419,0.000028,0.00000697,4.015066516,0.0000746,gain,ns,-0.00000162,0.0000118,-0.137064423,0.891068849,neg,ns,-0.007687145,0.003470488,-2.21500388,0.027486531,neg,ns,1.560880071,-0.0000263,0.00011935,-0.220142811,0.825904835,neg,ns,0.840068247,Zbtb20,Zbtb20_Intron,16,43323298,43323347,43323346,43323347,50,-,CCTTGGCAGCCTAAATCTTCTGGCTAATTCACTGATCAGTTAAATAGTCG,"Intron (Zbtb20-209/Zbtb20, intron 7 of 7)",16,42875881,43463175,587295,1,Zbtb20-209,447417,Zbtb20-209;Zbtb20-211;Zbtb20-217;Zbtb20-218;Zbtb20-204;Zbtb20-215;Zbtb20-201;Zbtb20-203,Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,98,56490,ENSMUSG00000022708,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1,cg05247547,0.0000899,0.0000122,7.361736532,1.65E-12,gain,yes,-0.00000284,0.0000208,-0.13704562,0.891083699,neg,ns,0.055797231,0.006079351,9.178155098,6.37E-18,pos,yes,17.19554041,-0.001033757,0.000209068,-4.944587916,0.00000125,neg,yes,0.840776006,Uty,Uty_threeUTR,Y,1129864,1129913,1129912,1129913,50,-,ACTTACTTAATCATTTCAAAAAGCTTTGGATCTGAGACTTTGATATTTCG,3' UTR,21,1096861,1245691,148831,2,Uty-205,115778,Uty-205;Uty-210;Uty-201;Uty-204;Uty-208;Uty-212,Uty;Uty;Uty;Uty;Uty;Uty,0;0;0;0;0;7268,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,1,22290,ENSMUSG00000068457,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11372,cg26686378,0.00000259,0.000000988,2.625158213,0.009090257,gain,ns,-0.00000023,0.00000168,-0.137042283,0.891086334,neg,ns,0.000783273,0.000491625,1.593232105,0.112127201,pos,ns,0.950289018,-0.00000869,0.0000169,-0.513710408,0.607820426,neg,ns,0.011537015,Hand1,Hand1_Promoter,11,57837151,57837200,57837199,57837200,50,-,ATATTAGCGCGGTGTAAAATATTCTCGCTGTCTTGGGGAATCGCGTCGCG,Promoter (4-5kb),11,57828705,57832818,4114,2,Hand1-203,-4382,Hand1-203;Hand1-202,Hand1;Hand1,-4333;-4333,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,4,4,15110,ENSMUSG00000037335,conserved gene and region,11,57837102,57837281,180,*,180,18,0.533333333,1.408695652,0.1,4.82E-14,CpGisland,TRUE,U13,Hc-P
26337,cg01088131,-0.000000868,0.00000372,-0.233689338,0.81538041,loss,ns,0.000000865,0.00000631,0.137039065,0.891088875,pos,ns,0.001277228,0.001849653,0.690523128,0.49038195,pos,ns,0.309465524,-0.0000256,0.0000636,-0.402517192,0.687580856,neg,ns,0.929761124,Kiz,Kiz_Intergenic_upstream,2,146824159,146824208,146824207,146824208,50,-,ATGCATGACTACACTCATTTGGCTGTGACCCGCCAATTATGTGTTATCCG,Distal Intergenic,2,146855864,146970097,114234,1,Kiz-201,-31705,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,29,228730,ENSMUSG00000074749,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18840,cg22294661,-0.000174541,0.0000217,-8.054202296,1.74E-14,loss,yes,-0.00000504,0.0000368,-0.136908997,0.891191599,neg,ns,0.05924696,0.010785774,5.49306538,8.24E-08,pos,ns,7.083905911,-0.001247908,0.000370922,-3.364341507,0.000863654,neg,ns,0.689127134,Rsf1,Rsf1_Exon,7,97653057,97653106,97653057,97653058,50,+,CGAAACGAGTTGGCTGAGACTCTTGCACTCCTGAAAGCACAAATTGATCC,"Exon (Rsf1-206/Rsf1, exon 5 of 15)",7,97579897,97686420,106524,1,Rsf1-206,73160,Gm45186-201;Rsf1-206;Rsf1-201;Rsf1-208,Gm45186;Rsf1;Rsf1;Rsf1,1647;0;0;-4174,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,6,233532,ENSMUSG00000035623,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13448,cg24007325,0.00000186,0.00000128,1.451931769,0.147531877,gain,ns,0.000000297,0.00000217,0.136833568,0.891251172,pos,ns,-0.000813532,0.000636825,-1.277480716,0.202388467,neg,ns,0.69381424,0.0000326,0.0000219,1.488225591,0.137707926,pos,ns,0.973057786,Sltm,Sltm_Exon,9,70584080,70584129,70584080,70584081,50,-,CGCTTGGAAAGGGAACGCATTCGTATTGAACAGGTGCAGTCAGAAAATCT,"Exon (Sltm-206/Sltm, exon 15 of 21)",9,70542754,70592234,49481,1,Sltm-206,41326,Sltm-206;Sltm-203;Sltm-201;Sltm-208;Sltm-204;Sltm-207,Sltm;Sltm;Sltm;Sltm;Sltm;Sltm,0;0;0;0;8672;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,11,66660,ENSMUSG00000032212,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1125,cg22015587,0.00000693,0.00000643,1.07874064,0.281541997,gain,ns,-0.00000149,0.0000109,-0.136775057,0.891297384,neg,ns,0.007049593,0.003199066,2.203640999,0.028284588,pos,ns,1.548450143,-0.000219062,0.000110016,-1.99119463,0.047336918,neg,ns,0.806949944,Npr3,Npr3_Intron,15,11699815,11699864,11699815,11699816,50,-,CGTTTTGGTTAACCACAATGGCAAACTTAGTCAAGACATTTATGTCAACA,"Intron (Gm41271-201/Gm41271-201, intron 2 of 2)",15,11842260,11890988,48729,2,Npr3-202,191173,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,18162,ENSMUSG00000022206,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21782,cg17321243,-0.00000255,0.00000351,-0.72623395,0.468243326,loss,ns,-0.000000815,0.00000597,-0.136657867,0.891389941,neg,ns,-0.0001299,0.001747726,-0.074325137,0.940799613,neg,ns,0.02650287,0.0000153,0.0000601,0.255315241,0.798648939,pos,ns,0.921309049,Gm29781,Gm29781_Intergenic_downstream,6,109138818,109138867,109138818,109138819,50,-,CGAATGAGAGTAATAGCTGGTAACCAATATTAGATCATGATGACAAGGAA,Distal Intergenic,6,109125685,109126162,478,1,Gm29781-201,13182,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,101056113,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25842,cg06836771,-0.0000529,0.00000696,-7.589962033,3.78E-13,loss,yes,-0.00000162,0.0000118,-0.136638342,0.891405362,neg,ns,-0.004276789,0.003465651,-1.234050529,0.218118798,neg,ns,0.661306904,-0.000113567,0.000119183,-0.952871648,0.34139748,neg,ns,0.863299075,Gm42424,Gm42424_Intergenic_upstream,5,139676969,139677018,139677017,139677018,50,+,TAAATCCATTTATTGCAAAATTACTTTTCAATAATTACATCACCGTGCCG,Distal Intergenic,5,139701647,139702022,376,1,Gm42424-201,-24629,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,5,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9660,cg20150793,-0.0000333,0.0000101,-3.287755414,0.001125948,loss,ns,0.00000235,0.0000172,0.136594427,0.891440047,pos,ns,-0.00602489,0.00503916,-1.195613817,0.232761068,neg,ns,0.633089659,-0.000111903,0.000173296,-0.645730315,0.518931702,neg,ns,0.7655677,Tenm3,Tenm3_Intergenic_upstream,8,49738314,49738363,49738362,49738363,50,-,TCATACAAGTTTAAAACAACTTGGCATTTCAAAATGTTTCTAGGTAGGCG,Distal Intergenic,8,48646261,48843951,197691,2,Tenm3-207,-894412,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,39,23965,ENSMUSG00000031561,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11092,cg06177598,0.0000244,0.00000945,2.579944706,0.0103417,gain,ns,0.00000219,0.0000161,0.136493939,0.891519414,pos,ns,0.022422959,0.004703578,4.767213595,0.00000288,pos,ns,5.541027828,-0.000666592,0.000161756,-4.120980801,0.0000485,neg,ns,0.130409828,Gm28900,Gm28900_Intergenic_downstream,1,56539768,56539817,56539816,56539817,50,-,AAAATGCATCTTGTTTCTTTCAACCCTTGACTGTTTTGACATTTTCTTCG,Distal Intergenic,1,56451407,56451562,156,1,Gm28900-201,88410,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,12,102635907,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24554,cg12699480,-0.00000558,0.00000369,-1.512553559,0.131411862,loss,ns,0.000000855,0.00000627,0.136383784,0.891606418,pos,ns,-0.001378618,0.001837164,-0.750405812,0.453579506,neg,ns,0.343346576,0.0000496,0.0000632,0.785626847,0.432686177,pos,ns,0.960949087,Ank2,Ank2_Exon,3,126947683,126947732,126947731,126947732,50,-,CATTTTGATCAAATCTTGTTTCATCTCAGAAACTTCAGAGAGCAAGTCCG,"Exon (Ank2-208/Ank2, exon 37 of 46)",3,126921612,126998462,76851,2,Ank2-201,50730,Ank2-201;Ank2-208;Ank2-207;Ank2-206;Ank2-204;Ank2-222,Ank2;Ank2;Ank2;Ank2;Ank2;Ank2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,7,109676,ENSMUSG00000032826,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8675,cg17603248,-0.0000134,0.00000401,-3.348134975,0.000913883,loss,ns,-0.000000929,0.00000681,-0.136325305,0.891652607,neg,ns,-0.003376313,0.001996043,-1.69150334,0.091745663,neg,ns,1.037414456,0.0000341,0.0000686,0.497042635,0.619511303,pos,ns,0.917262491,Poll,Poll_Intergenic_downstream,19,45535479,45535528,45535479,45535480,50,-,CGGCCCGGGCTCCAGACACTAAATTAGATTTTTGACAATTAGAGAGACTA,Distal Intergenic,19,45552275,45560531,8257,2,Poll-201,25052,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,16,56626,ENSMUSG00000025218,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19215,cg14947020,-0.00000301,0.0000015,-2.0122048,0.04506306,loss,ns,0.000000346,0.00000254,0.136245935,0.891715297,pos,ns,0.001421262,0.000745046,1.907615905,0.057364757,pos,ns,1.241354841,-0.0000533,0.0000256,-2.081179894,0.038237946,neg,ns,0.060122984,Msl1,Msl1_Exon,11,98796487,98796536,98796535,98796536,50,+,TCAGGCCGCCTGCCTCAAACAGATCCTTCTGCTGCAATTGGACCTCATCG,Promoter (<=1kb),11,98795516,98807859,12344,1,Msl1-201,971,Msl1-201;Msl1-203;Msl1-204;Msl1-202;Msl1-205,Msl1;Msl1;Msl1;Msl1;Msl1,0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,11,13,74026,ENSMUSG00000052915,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
6395,cg03928893,0.0000292,0.0000077,3.792675364,0.000179147,gain,ns,-0.00000178,0.0000131,-0.136223839,0.89173275,neg,ns,-0.001690824,0.003833834,-0.441026953,0.659500902,neg,ns,0.180784606,0.0000675,0.000131845,0.512335986,0.608780707,pos,ns,0.757771255,Gm1043,Gm1043_fiveUTR,5,37124960,37125009,37125008,37125009,50,-,AGTGCTAGAACTCGAAGTAAGAGACTCTATCTGTTGTAAACTCTCAAACG,5' UTR,5,37085370,37229342,143973,1,Gm1043-205,39590,Gm1043-205;Jakmip1-201;Jakmip1-202;Jakmip1-212;Jakmip1-215;Jakmip1-203,Gm1043;Jakmip1;Jakmip1;Jakmip1;Jakmip1;Jakmip1,0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,3,381634,ENSMUSG00000117286,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7387,cg14452952,-0.0000012,0.00000343,-0.349014195,0.727315592,loss,ns,-0.000000794,0.00000583,-0.136188284,0.891760833,neg,ns,0.007150954,0.001708267,4.18608781,0.000037,pos,ns,4.431622454,-0.000236176,0.0000587,-4.02020739,0.0000731,neg,ns,0.905716218,Snx3,Snx3_Intron,10,42523636,42523685,42523636,42523637,50,-,CGGAAGGGTGAACTTGGTTAAAAAGCCAATAGGTGAAATTAGAGAGAAAT,"Intron (Snx3-203/Snx3, intron 1 of 3)",10,42502030,42534787,32758,1,Snx3-203,21606,Snx3-203;Snx3-201;Snx3-202,Snx3;Snx3;Snx3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,54198,ENSMUSG00000019804,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9018,cg04227740,-0.0000142,0.00000478,-2.96885691,0.003222229,loss,ns,-0.00000111,0.00000813,-0.136135249,0.891802724,neg,ns,-0.004626922,0.002381205,-1.943100893,0.052908983,neg,ns,1.276470586,0.000201453,0.0000819,2.460062178,0.014436663,pos,ns,0.937737577,Srf,Srf_Exon,17,46553612,46553661,46553660,46553661,50,-,TCTTCAAAGCCAGTGGCACTCATTCTCTGGTCTGTTGTGGGGTCTGAACG,"Exon (Srf-201/Srf, exon 2 of 7)",17,46548329,46556175,7847,2,Srf-201,2514,Srf-201;Srf-203;Srf-202;Srf-204,Srf;Srf;Srf;Srf,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,11,20807,ENSMUSG00000015605,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
289,cg12507329,0.00000567,0.00000166,3.41941363,0.000711547,gain,ns,-0.000000384,0.00000282,-0.13613176,0.891805479,neg,ns,0.00041476,0.000825668,0.502332897,0.615790004,pos,ns,0.210567365,-0.0000102,0.0000284,-0.360395148,0.718797087,neg,ns,0.954613,Atad2b,Atad2b_threeUTR,12,5013983,5014032,5013983,5013984,50,-,CGGTGGATATTGAAGAGGTCTTGTTTCAGTAGTGTGCAAACAGTGAAGTT,3' UTR,12,4917404,5047394,129991,1,Atad2b-201,96579,Atad2b-201;Atad2b-203,Atad2b;Atad2b,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,7,320817,ENSMUSG00000052812,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27022,cg04422517,0.00000999,0.0000097,1.029618432,0.303991813,gain,ns,0.00000224,0.0000165,0.136109321,0.891823203,pos,ns,-0.005605396,0.004828397,-1.160922707,0.246566511,neg,ns,0.60806591,-0.000419182,0.000166048,-2.52445951,0.012086577,neg,ns,0.721784398,Epb41l1,Epb41l1_fiveUTR,2,156493905,156493954,156493905,156493906,50,+,CGTGCTGGTCACCATGACAACAGAGACAGGCCCCGACTCTGAGGTGAAGA,5' UTR,2,156420909,156543214,122306,1,Epb41l1-203,72996,Epb41l1-203;Epb41l1-204;Epb41l1-208;Epb41l1-206;Epb41l1-202;Epb41l1-205;Epb41l1-201,Epb41l1;Epb41l1;Epb41l1;Epb41l1;Epb41l1;Epb41l1;Epb41l1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,4,13821,ENSMUSG00000027624,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7722,cg01468874,0.00000821,0.00000416,1.972367934,0.049456106,gain,ns,-0.000000962,0.00000707,-0.13606935,0.891854775,neg,ns,0.001250745,0.002071633,0.603747995,0.546452727,pos,ns,0.262447402,-0.0000672,0.0000712,-0.942973523,0.346428744,neg,ns,0.923290075,Arhgap15,Arhgap15_Intron,2,43978941,43978990,43978941,43978942,50,+,CGCACTTAATGATATCTGATGATATCATTAGGCAAAGTGTTCATAAACAG,"Intron (Arhgap15-203/Arhgap15, intron 6 of 14)",2,43748824,44395953,647130,1,Arhgap15-203,230117,Arhgap15-203;Arhgap15-202;Arhgap15-201,Arhgap15;Arhgap15;Arhgap15,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,72,78,76117,ENSMUSG00000049744,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11095,cg23827201,0.0000041,0.00000508,0.807552796,0.419967266,gain,ns,-0.00000117,0.00000863,-0.135940965,0.891956184,neg,ns,-0.00074381,0.002527802,-0.29425168,0.768762522,neg,ns,0.114207797,0.0000939,0.0000869,1.079702279,0.281114093,pos,ns,0.806796804,Gm47178,Gm47178_Intergenic_downstream,9,56573131,56573180,56573179,56573180,50,+,TACCCAAGTCACAGAAACACCCGGGTAATAGCTGTAAAATTACACACTCG,Distal Intergenic,9,56543756,56544097,342,1,Gm47178-201,29375,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,5,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19434,cg26792236,0.0000015,0.00000299,0.502678058,0.615547552,gain,ns,0.000000691,0.00000508,0.135939323,0.89195748,pos,ns,0.001241939,0.001488369,0.834429419,0.404681592,pos,ns,0.392886551,-0.0000842,0.0000512,-1.644172617,0.101154243,neg,ns,0.8166472,Prpf40b,Prpf40b_Exon,15,99305179,99305228,99305179,99305180,50,-,CGGACACCGCCAGCTGTGAGTCTTCTGGGGGCCTGCTCCCCCCAGGCTCG,"Exon (Prpf40b-205/Prpf40b, exon 5 of 8)",15,99295087,99305965,10879,1,Prpf40b-205,10092,Prpf40b-205;Prpf40b-214;Prpf40b-206;Prpf40b-209;Prpf40b-211;Prpf40b-212;Prpf40b-208;Prpf40b-201;Prpf40b-202;Prpf40b-210;Prpf40b-215,Prpf40b;Prpf40b;Prpf40b;Prpf40b;Prpf40b;Prpf40b;Prpf40b;Prpf40b;Prpf40b;Prpf40b;Prpf40b,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,10,54614,ENSMUSG00000023007,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18204,cg14618517,-0.00000466,0.00000469,-0.995225343,0.320402869,loss,ns,-0.00000108,0.00000796,-0.135925103,0.891968712,neg,ns,0.000564254,0.00233287,0.241871201,0.809039887,pos,ns,0.092030066,-0.00011001,0.0000802,-1.371229808,0.171295113,neg,ns,0.535310007,Ap3b1,Ap3b1_Exon,13,94472858,94472907,94472906,94472907,50,-,TACCTGGAATTATCTAATTGGCCAGAGGTGGCGCCCGACCCATCAGTTCG,Promoter (<=1kb),13,94472863,94566313,93451,1,Ap3b1-205,0,Ap3b1-201;Ap3b1-205,Ap3b1;Ap3b1,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,55,11774,ENSMUSG00000021686,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23206,cg04584489,-0.0000182,0.00000908,-2.00284151,0.046064724,loss,ns,-0.0000021,0.0000154,-0.13589438,0.89199298,neg,ns,-0.007727394,0.004521396,-1.709072687,0.088438305,neg,ns,1.05335959,0.00042452,0.00015549,2.730202911,0.006691538,pos,ns,0.828489084,Rnf220,Rnf220_Intron,4,117486979,117487028,117486979,117486980,50,-,CGATTATCTGAGAAATATTACTTATTTCAAAACGGTTCTGTAGGGAGGAC,"Intron (Rnf220-201/Rnf220, intron 2 of 14)",4,117271463,117497052,225590,2,Rnf220-201,10024,Rnf220-201;Rnf220-207;Rnf220-204,Rnf220;Rnf220;Rnf220,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
879,cg21444333,0.000000679,0.0000049,0.138729585,0.889753915,gain,ns,0.00000113,0.00000832,0.135718406,0.892131982,pos,ns,0.005801312,0.002436557,2.380946827,0.017871943,pos,ns,1.747828241,-0.000214614,0.0000838,-2.561235866,0.010903104,neg,ns,0.901960297,Gm35736,Gm35736_Intergenic_downstream,6,9332202,9332251,9332250,9332251,50,+,GTCTCCTTAATAGCACTCTGGTCTTAATAGAGTGTGTCTCTCAGGGTCCG,Distal Intergenic,6,9146766,9147078,313,1,Gm35736-201,185436,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,102639414,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15977,cg07202778,0.00000321,0.00000282,1.136599079,0.256583766,gain,ns,-0.000000651,0.0000048,-0.135686574,0.892157127,neg,ns,-0.003019549,0.001405223,-2.14880376,0.032424125,neg,ns,1.489131732,0.000109545,0.0000483,2.266814467,0.024090236,pos,ns,0.957902067,Tshz1,Tshz1_Intron,18,84078996,84079045,84079044,84079045,50,+,TGTTCCCCTTCATAAATCAATGTGCAAAATTGCTAATACACTAGTTATCG,"Intron (Tshz1-201/Tshz1, intron 1 of 1)",18,84011627,84086404,74778,2,Tshz1-201,7359,Tshz1-201;Tshz1-202;Tshz1-203;Tshz1-204,Tshz1;Tshz1;Tshz1;Tshz1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,18,110796,ENSMUSG00000046982,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14685,cg04556945,0.0000217,0.00000395,5.507690177,7.64E-08,gain,yes,0.000000908,0.0000067,0.135484843,0.892316479,pos,ns,0.006278401,0.001963664,3.197288078,0.001530484,pos,ns,2.815171181,-0.000127805,0.0000675,-1.892555927,0.059348421,neg,ns,0.013206582,Ctnna2,Ctnna2_Exon,6,77243802,77243851,77243802,77243803,50,+,CGCGCCGGCCAGTTCACGGGGTTAATGCAGCTCACGTGGCTCTATCTGGA,"Exon (Lrrtm1-201/Lrrtm1, exon 2 of 3)",6,76881637,77979699,1098063,2,Ctnna2-204,735848,Ctnna2-204;Ctnna2-205;Ctnna2-202;Ctnna2-201;Lrrtm1-201;Lrrtm1-202;Lrrtm1-203;Lrrtm1-204,Ctnna2;Ctnna2;Ctnna2;Ctnna2;Lrrtm1;Lrrtm1;Lrrtm1;Lrrtm1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,16,24,12386,ENSMUSG00000063063,conserved gene and region,6,77243660,77243918,259,*,259,23,0.633204633,0.885930994,0.088803089,1.29E-16,CpGisland,TRUE,U13,Hc-P
6576,cg10989700,0.0000206,0.00000421,4.888695371,0.00000163,gain,yes,0.000000968,0.00000714,0.135454488,0.892340457,pos,ns,0.006983906,0.002093146,3.336559093,0.00095141,pos,ns,3.021632116,-0.0000806,0.000072,-1.119551255,0.263771713,neg,ns,0.083980621,Zfp536,Zfp536_Exon,7,37773152,37773201,37773200,37773201,50,-,CGTCCATTTTTTCTCTCTGTCTAGCAACTAAGAAACCATTTAACACAGCG,Promoter (<=1kb),7,37569629,37773641,204013,2,Zfp536-208,440,Zfp536-202;Zfp536-201;Zfp536-203;Zfp536-206;Zfp536-209;Zfp536-208;Zfp536-205;Zfp536-207;Zfp536-210,Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536,0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,13,112,243937,ENSMUSG00000043456,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
18819,cg12982463,0.0000266,0.00000645,4.117434405,0.0000492,gain,ns,-0.00000148,0.000011,-0.135358216,0.892416507,neg,ns,-0.002965921,0.003210262,-0.923887663,0.35626337,neg,ns,0.448228828,0.0000366,0.000110401,0.331946492,0.740153981,pos,ns,0.727089729,E130114P18Rik,E130114P18Rik_Intron,4,97581900,97581949,97581900,97581901,50,+,CGGACTACATGTTGCCCCACATGCCACTGCAAATGTTTTCTCAATTAGGT,"Intron (E130114P18Rik-207/E130114P18Rik, intron 1 of 4)",4,97568133,97584596,16464,2,E130114P18Rik-207,2647,E130114P18Rik-207;E130114P18Rik-201;E130114P18Rik-203;E130114P18Rik-202;E130114P18Rik-206;E130114P18Rik-204;E130114P18Rik-209;E130114P18Rik-208,E130114P18Rik;E130114P18Rik;E130114P18Rik;E130114P18Rik;E130114P18Rik;E130114P18Rik;E130114P18Rik;E130114P18Rik,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,24,319865,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21651,cg12775210,-0.000032,0.00000782,-4.087449178,0.0000556,loss,ns,-0.0000018,0.0000133,-0.135251594,0.892500733,neg,ns,0.014482357,0.003893497,3.719627228,0.000236786,pos,ns,3.625643591,-0.000929092,0.000133897,-6.93885212,2.31E-11,neg,yes,0.874616358,Cep112,Cep112_Intron,11,108780641,108780690,108780689,108780690,50,+,TCTCACCCTTGTTTAACTTTAAATCTCAAGCAATTAATAAATTAGACTCG,"Intron (Cep112-213/Cep112, intron 23 of 26)",11,108425192,108860615,435424,1,Cep112-213,355449,Cep112-213;Cep112-201;Cep112-206;Cep112-216;Cep112-208;Cep112-205;Cep112-217;Cep112-203;Cep112-202;Cep112-204;Cep112-214;Cep112-207,Cep112;Cep112;Cep112;Cep112;Cep112;Cep112;Cep112;Cep112;Cep112;Cep112;Cep112;Cep112,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,9,76380,ENSMUSG00000020728,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19422,cg08260233,-0.0000107,0.00000753,-1.416113325,0.157746302,loss,ns,0.00000173,0.0000128,0.135247958,0.892503605,pos,ns,-0.008552305,0.003748403,-2.281586583,0.023191487,neg,ns,1.634671406,0.00016486,0.000128907,1.278905544,0.20188685,pos,ns,0.756397176,Efnb1,Efnb1_Intergenic_downstream,X,99291692,99291741,99291740,99291741,50,-,ACAGGACAGTGATTAGTCTTCAGGGAGCAAAGGCGAAGACTCTGCCGGCG,Distal Intergenic,20,99138131,99147230,9100,1,Efnb1-202,153610,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,14,13641,ENSMUSG00000031217,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24855,cg18358466,0.0000292,0.00000972,3.000166346,0.002917217,gain,ns,0.00000223,0.0000165,0.135219596,0.892526011,pos,ns,0.019203448,0.004839481,3.968080024,0.0000901,pos,ns,4.045408725,-0.001585681,0.000166429,-9.527650788,4.84E-19,neg,yes,0.847481257,Rdh5,Rdh5_Exon,10,128913783,128913832,128913831,128913832,50,-,TAGGAGGCAGGCAGCCAGAGCAGCTTGGCATCCCAACCTGGGCTGTAGCG,"Exon (Rdh5-201/Rdh5, exon 5 of 5)",10,128913593,128919297,5705,2,Rdh5-201,5465,Bloc1s1-205;Cd63-204;Cd63-202;Cd63-206;Cd63-201;Cd63-205;Cd63-203;Rdh5-201;Rdh5-203;Rdh5-204;Rdh5-206;Rdh5-207;Rdh5-205;Rdh5-202,Bloc1s1;Cd63;Cd63;Cd63;Cd63;Cd63;Cd63;Rdh5;Rdh5;Rdh5;Rdh5;Rdh5;Rdh5;Rdh5,9692;12794;4963;4438;4084;3861;3161;0;0;791;5440;5465;4873;9056,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,19682,ENSMUSG00000025350,mapped to different genes,10,128913831,128913996,166,*,166,10,0.578313253,0.725524476,0.060240964,0.0000068,CpGisland,TRUE,NA,NRS
6575,cg16062897,0.00000401,0.000002,2.007978727,0.045512848,gain,ns,0.000000458,0.00000339,0.135196312,0.892544404,pos,ns,0.001170708,0.000993005,1.178955122,0.239320121,pos,ns,0.621020785,-0.0000144,0.0000341,-0.421487733,0.673691073,neg,ns,0.036015738,Zfp536,Zfp536_Exon,7,37773104,37773153,37773152,37773153,50,-,CAGAGACTGAACCCTTGATATAATAATCTACAAAGAATGGTGTGTGATCG,Promoter (<=1kb),7,37569629,37773641,204013,2,Zfp536-208,488,Zfp536-202;Zfp536-201;Zfp536-203;Zfp536-206;Zfp536-209;Zfp536-208;Zfp536-205;Zfp536-207;Zfp536-210,Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536,0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,13,112,243937,ENSMUSG00000043456,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
16518,cg09564832,-0.0000231,0.0000205,-1.128150367,0.26012877,loss,ns,0.0000047,0.0000348,0.135140097,0.892588812,pos,ns,-0.017597326,0.010199708,-1.725277388,0.085474085,neg,ns,1.068165541,0.000707385,0.000350767,2.016678831,0.044590991,pos,ns,0.124539341,Tent5a,Tent5a_Exon,9,85326300,85326349,85326300,85326301,50,+,CGGGTAAGAAGTCCAACAGGCAGTCCAGCACGACGTCCTTCACAGTCTGA,Promoter (<=1kb),9,85320439,85327124,6686,2,Tent5a-201,775,Tent5a-201;Tent5a-202,Tent5a;Tent5a,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,6,212943,ENSMUSG00000032265,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
1011,cg04318901,-0.0000586,0.0000103,-5.670757654,3.26E-08,loss,yes,0.00000237,0.0000176,0.135126906,0.892599233,pos,ns,-0.003409353,0.005145022,-0.662650819,0.508046583,neg,ns,0.294096465,-0.000127192,0.000176937,-0.718853433,0.472772721,neg,ns,0.634695886,Gm12920,Gm12920_Intron,4,10707373,10707422,10707421,10707422,50,+,CAACCAGCTTTCATGTCAAGTAAAACAAAACTTGTTGGCTGGTCCAATCG,"Intron (1700123O12Rik-203/1700123O12Rik-203, intron 1 of 3)",4,10813543,10814728,1186,1,Gm12920-201,-106121,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,383991,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17471,cg18407212,-0.00000579,0.00000648,-0.893172378,0.372457705,loss,ns,-0.00000149,0.000011,-0.135086144,0.892631434,neg,ns,-0.005673449,0.003223677,-1.759930738,0.07940579,neg,ns,1.100147831,0.0000969,0.000110862,0.873751503,0.382929946,pos,ns,0.887800071,Gm12635,Gm12635_Intergenic_upstream,4,90437810,90437859,90437858,90437859,50,+,GTTCAGGCAGCTCTGTGGTTTGCGCTGCATATTAATTTCTGTCCGACACG,Distal Intergenic,4,90452874,90453625,752,1,Gm12635-201,-15015,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,5,100417247,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11063,cg10190963,0.00000819,0.00000524,1.563230249,0.11901868,gain,ns,-0.0000012,0.0000089,-0.135041439,0.89266675,neg,ns,-0.003888184,0.002606053,-1.491981719,0.136720866,neg,ns,0.864165199,0.0000669,0.0000896,0.746086574,0.456180504,pos,ns,0.893400438,Nkx2-1,Nkx2-1_Intergenic_downstream,12,56482815,56482864,56482863,56482864,50,-,TGTATTACGCTTTGCATGCTAAGTATTTCACTTCACAAATTGACCCTCCG,Distal Intergenic,12,56531958,56535106,3149,2,Nkx2-1-202,52291,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,29,21869,ENSMUSG00000001496,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14275,cg20109907,-0.0000509,0.00000728,-6.98957963,1.70E-11,loss,yes,-0.00000167,0.0000124,-0.135035401,0.89267152,neg,ns,-0.005401297,0.003624767,-1.49010897,0.137212312,neg,ns,0.862606919,-0.00000205,0.000124655,-0.016430852,0.986901237,neg,ns,0.894581039,Smg6,Smg6_Intron,11,75031280,75031329,75031328,75031329,50,+,TTATGATGTCATGAGGGATTCCTTAATTTTGCAGCTGCTTCCTGATTACG,"Intron (Smg6-201/Smg6, intron 10 of 18)",11,74925823,75164448,238626,1,Smg6-201,105457,Smg6-201;Smg6-202;Smg6-204,Smg6;Smg6;Smg6,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,34,103677,ENSMUSG00000038290,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17068,cg00775910,0.0000826,0.000012,6.904311871,2.86E-11,gain,yes,-0.00000274,0.0000203,-0.134793429,0.892862676,neg,ns,0.013629714,0.005952152,2.289880068,0.022699839,pos,ns,1.643977229,-0.000339148,0.000204694,-1.656852288,0.098561041,neg,ns,0.140566734,Gata2,Gata2_Promoter,6,88190783,88190832,88190783,88190784,50,-,CGATAATCTGGAAGGCAGAGATAAGGAACACCATTTATTCCGCGGCACTT,Promoter (3-4kb),6,88193891,88207032,13142,1,Gata2-202,-3108,Gata2-202,Gata2,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,7,12,14461,ENSMUSG00000015053,mapped to different genes,6,88190415,88190826,412,*,412,35,0.609223301,0.933695934,0.084951456,2.50E-24,CpGisland,TRUE,U13,Hc-P
785,cg09432451,0.0000665,0.0000111,6.013547863,5.10E-09,gain,yes,0.00000253,0.0000188,0.134665837,0.892963476,pos,ns,0.016705144,0.00550597,3.034005323,0.002617509,pos,ns,2.582111796,-0.000301721,0.00018935,-1.593456557,0.112076862,neg,ns,0.236307816,Gm13255,Gm13255_Intergenic_downstream,2,8728099,8728148,8728099,8728100,50,+,CGGGTGATGTGTGTATTCAACTCCAGGCTGACTCCTCTTATGCTAATACA,Distal Intergenic,2,8633937,8634483,547,1,Gm13255-201,94162,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,7,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15993,cg01171786,0.0000274,0.00001,2.731398817,0.00666788,gain,ns,0.0000023,0.0000171,0.1346305,0.892991393,pos,ns,0.019234564,0.00499906,3.84763598,0.000144815,pos,ns,3.839187436,-0.0000235,0.000171917,-0.136742847,0.891322823,neg,ns,0.355476446,Dysf,Dysf_Intron,6,84105648,84105697,84105696,84105697,50,+,CGGCACCCTCGGGGCAGTAAATATTATATTACTACAGGGTGTGCAGTACG,"Intron (Dysf-204/Dysf, intron 22 of 54)",6,84008590,84211060,202471,1,Dysf-204,97058,Dysf-204;Dysf-205;Dysf-213;Dysf-215;Dysf-210;Dysf-211;Dysf-212;Dysf-214;Dysf-216;Dysf-202;Dysf-203;Dysf-201;Dysf-206;Dysf-209,Dysf;Dysf;Dysf;Dysf;Dysf;Dysf;Dysf;Dysf;Dysf;Dysf;Dysf;Dysf;Dysf;Dysf,0;0;0;0;0;0;0;0;0;0;0;0;0;-854,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,15,26903,ENSMUSG00000033788,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5793,cg23668389,-1.42E-08,0.000000705,-0.020177215,0.983914984,loss,ns,-0.000000161,0.0000012,-0.134618727,0.893000694,neg,ns,0.000200516,0.000351127,0.571064615,0.568369593,pos,ns,0.245369164,-0.00000154,0.0000121,-0.127739749,0.898437756,neg,ns,0.981199119,Kdm3b,Kdm3b_Exon,18,34803723,34803772,34803723,34803724,50,-,CGCAACATTCGCTTTGCCACTTACACCAAAGAAAACGGCAGGACTCTGGT,"Exon (Kdm3b-201/Kdm3b, exon 7 of 24)",18,34777047,34838660,61614,1,Kdm3b-201,26676,Kdm3b-201;Kdm3b-206;Kdm3b-204;Kdm3b-205;Kdm3b-207,Kdm3b;Kdm3b;Kdm3b;Kdm3b;Kdm3b,0;0;0;26618;6828,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,Exon,5,6,277250,ENSMUSG00000038773,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9899,cg18940298,-0.0000148,0.00000492,-2.998030662,0.00293715,loss,ns,-0.00000113,0.00000837,-0.134554802,0.893051197,neg,ns,-0.002709989,0.002450919,-1.105703401,0.269712279,neg,ns,0.569099281,0.00000577,0.0000843,0.068449359,0.94547206,pos,ns,0.922576529,Ppargc1a,Ppargc1a_threeUTR,5,51463167,51463216,51463215,51463216,50,+,GTCAGCTTCTAAACAAGAAATAATCTTGAAGATTCTCACCCATCATCCCG,3' UTR,5,51454250,51553922,99673,2,Ppargc1a-203,90706,Ppargc1a-203;Ppargc1a-201;Ppargc1a-205;Ppargc1a-204,Ppargc1a;Ppargc1a;Ppargc1a;Ppargc1a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,5,13,19017,ENSMUSG00000029167,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7674,cg23842566,-0.0000226,0.00000426,-5.298319988,0.000000222,loss,yes,-0.000000974,0.00000724,-0.134514146,0.893083317,neg,ns,-0.003115175,0.002122054,-1.468000056,0.143118091,neg,ns,0.844305465,0.0000705,0.000073,0.965473585,0.335060224,pos,ns,0.954811216,Zbtb20,Zbtb20_threeUTR,16,43618897,43618946,43618945,43618946,50,+,TTGTACTACATGAAGAACTGTTTTTTGCCTGCTGGTACATTACATTTCCG,3' UTR,16,42907652,43642602,734951,1,Zbtb20-204,711245,Zbtb20-204;Zbtb20-201;Zbtb20-203;Zbtb20-202;Zbtb20-205,Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,9,98,56490,ENSMUSG00000022708,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5888,cg16983152,-0.00000731,0.00000515,-1.420421228,0.156490056,loss,ns,0.00000117,0.00000874,0.134392075,0.893179758,pos,ns,-0.007212613,0.002561155,-2.816156319,0.005171713,neg,ns,2.2863656,-0.0000128,0.0000881,-0.144897707,0.884885797,neg,ns,0.930462505,Prrc2a,Prrc2a_Exon,17,35161845,35161894,35161893,35161894,50,-,AGGCAGGCGTCTGTGAAGCCGGCAGTGGCTGCGATTCCGGCGGCTGAGCG,"Exon (Prrc2a-201/Prrc2a, exon 4 of 31)",17,35149076,35164897,15822,2,Prrc2a-201,3003,Prrc2a-201;Prrc2a-206;Prrc2a-203,Prrc2a;Prrc2a;Prrc2a,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,13,53761,ENSMUSG00000024393,conserved gene and region,17,35161763,35161934,172,*,172,13,0.622093023,0.8263119,0.075581395,1.09E-08,CpGisland,TRUE,NA,NRS
2330,cg18483460,-0.000000349,0.0000013,-0.269667356,0.787595591,loss,ns,0.000000296,0.0000022,0.134349203,0.893213629,pos,ns,0.000954093,0.000644907,1.479427592,0.140041526,pos,ns,0.853743166,-0.0000414,0.0000222,-1.868545249,0.062629145,neg,ns,0.026760184,Meis1,Meis1_fiveUTR,11,19018928,19018977,19018976,19018977,50,-,GTGTGTTGCACAGGCGGAGAGGTGGATTCCGACCAGAATGCTAGAACCCG,Promoter (<=1kb),11,18880428,19018969,138542,2,Meis1-209,0,Meis1-206;Meis1-202;Meis1-209;Meis1-201;Meis1-208;Meis1-207;Meis1-204;Meis1-205,Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,7,88,17268,ENSMUSG00000020160,conserved gene but different region,11,19018885,19019116,232,*,232,18,0.590517241,0.911392405,0.077586207,4.67E-12,CpGisland,TRUE,U1,Pr-A
12111,cg26124817,-0.00000247,0.00000163,-1.511859387,0.131588351,loss,ns,-0.000000372,0.00000277,-0.134267767,0.893277969,neg,ns,-0.000940983,0.000812114,-1.158683092,0.247477181,neg,ns,0.606464841,-0.0000364,0.0000279,-1.302468405,0.193723101,neg,ns,0.032629045,Pias1,Pias1_fiveUTR,9,62980840,62980889,62980840,62980841,50,-,CGCTTTACCTTTAGTTCCGCACTGTCCGCCATCTTGCGTCTGTCAGCGCA,Promoter (<=1kb),9,62878368,62980879,102512,2,Pias1-201,0,Pias1-201;Pias1-202;Pias1-205,Pias1;Pias1;Pias1,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,12,56469,ENSMUSG00000032405,conserved gene but different region,9,62980517,62981139,623,*,623,66,0.706260032,0.90840403,0.105939005,4.79E-52,CpGisland,TRUE,NA,NRS
27596,cg23582869,-0.000107931,0.0000103,-10.49833183,2.92E-22,loss,yes,-0.00000234,0.0000175,-0.134224473,0.893312173,neg,ns,-0.011268904,0.005116843,-2.202315514,0.028378976,neg,ns,1.547003284,-0.000220038,0.000175968,-1.250443283,0.212080692,neg,ns,0.75884667,Usp21,Usp21_Exon,1,171283625,171283674,171283673,171283674,50,-,TCTGGAATCCCACCTTGGGGATGGGCAGGGACAGGTCACAAAAAACCTCG,"Exon (Usp21-201/Usp21, exon 8 of 13)",1,171281945,171287991,6047,2,Usp21-201,4317,Ppox-207;Ppox-201;Ppox-206;Ppox-208;Ppox-202;Ppox-204;Ppox-205;Ppox-203;Ufc1-201;Ufc1-203;Usp21-201;Usp21-202;Usp21-208;Usp21-210;Usp21-203;Usp21-207;Usp21-205;Usp21-204;Usp21-209;Usp21-206;Usp21-211;Usp21-212,Ppox;Ppox;Ppox;Ppox;Ppox;Ppox;Ppox;Ppox;Ufc1;Ufc1;Usp21;Usp21;Usp21;Usp21;Usp21;Usp21;Usp21;Usp21;Usp21;Usp21;Usp21;Usp21,-2439;-2439;-2439;-2865;-3798;-3103;-2439;-2506;11350;6766;0;0;-719;0;0;-458;0;0;0;0;0;3132,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,30941,ENSMUSG00000053483,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21193,cg01758782,0.000000457,0.000000342,1.333158134,0.183458786,gain,ns,0.000000078,0.000000582,0.134033208,0.893463288,pos,ns,0.00043543,0.000170463,2.554401085,0.011114889,pos,ns,1.954094852,-0.0000145,0.00000586,-2.475202324,0.013850417,neg,ns,0.008450635,Zfp644,Zfp644_fiveUTR,5,106696532,106696581,106696580,106696581,50,-,AGTTTGGTGCCGTGTGCGTCAAACCGGGGCGACGTTGGGAGCACGCGGCG,Promoter (<=1kb),5,106637818,106696564,58747,2,Zfp644-213,0,Zfp644-204;Zfp644-201;Zfp644-205;Zfp644-203;Zfp644-208;Zfp644-209;Zfp644-213;Zfp644-216;Zfp644-207;Zfp644-212;Zfp644-218;Zfp644-214;Zfp644-210;Zfp644-215;Zfp644-211;Zfp644-217,Zfp644;Zfp644;Zfp644;Zfp644;Zfp644;Zfp644;Zfp644;Zfp644;Zfp644;Zfp644;Zfp644;Zfp644;Zfp644;Zfp644;Zfp644;Zfp644,0;0;0;0;0;0;0;0;0;0;-1509;-366;0;0;0;-520,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,10,52397,ENSMUSG00000049606,conserved gene and region,5,106695921,106696912,992,*,992,127,0.724798387,1.009341601,0.128024194,2.26E-111,CpGisland,TRUE,U1,Pr-A
24119,cg16531363,-0.0000015,0.00000249,-0.601468947,0.547967268,loss,ns,-0.000000567,0.00000423,-0.134030725,0.89346525,neg,ns,0.000347,0.001239562,0.279937459,0.779712187,pos,ns,0.108065678,0.0000103,0.0000426,0.241620731,0.809233804,pos,ns,0.95631552,Galnt2l,Galnt2l_Exon,8,122738001,122738050,122738001,122738002,50,-,CGTACCGGCAAGAAGTAATTTACTTAGAAGAAATTAAAAGTTCATGTTAA,"Exon (C230057M02Rik-201/C230057M02Rik-201, exon 1 of 7)",8,119910841,124345722,4434882,1,Galnt2l-201,2827160,Galnt2l-201,Galnt2l,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,28,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11530,cg23160683,0.0000193,0.00000528,3.655820009,0.000301038,gain,ns,-0.0000012,0.00000897,-0.133921523,0.89355153,neg,ns,0.004888061,0.002627744,1.860173497,0.06380789,pos,ns,1.195125618,-0.000187772,0.0000904,-2.077856993,0.038545243,neg,ns,0.013058252,Med12l,Med12l_fiveUTR,3,59006965,59007014,59007013,59007014,50,-,CAACTCTCATTCATTTCGCCGGTTAACATGAGAGATCATGGCCGCCTTCG,Promoter (<=1kb),3,59006978,59093788,86811,1,Med12l-201,0,Med12l-203;Med12l-206;Med12l-201;Med12l-202;Med12l-204,Med12l;Med12l;Med12l;Med12l;Med12l,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,9,329650,ENSMUSG00000056476,conserved gene but different region,3,59006944,59007530,587,*,587,59,0.63713799,0.990646453,0.100511073,3.98E-45,CpGisland,TRUE,U3,Pr-B
2133,cg12175065,0.00000849,0.000002,4.248399715,0.0000285,gain,ns,0.000000454,0.00000339,0.13390522,0.893564411,pos,ns,0.001206872,0.000994328,1.213756412,0.225764667,pos,ns,0.646344025,0.00000167,0.0000342,0.048959838,0.960982831,pos,ns,0.014852208,Bhlhe22,Bhlhe22_fiveUTR,3,18054436,18054485,18054484,18054485,50,+,ATGGGTCCGGAAATCTCTTGAAGGTGAATCCAAGCAAGATAAACGGTGCG,Promoter (<=1kb),3,18054174,18057517,3344,1,Bhlhe22-201,262,Bhlhe22-201,Bhlhe22,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,9,22,59058,ENSMUSG00000025128,conserved gene and region,3,18054414,18055574,1161,*,1161,142,0.711455642,0.972379014,0.122308355,3.49E-121,CpGisland,TRUE,U3,Pr-B
7867,cg25905100,0.00000899,0.00000572,1.572508071,0.116852802,gain,ns,0.0000013,0.00000972,0.133862698,0.893598008,pos,ns,-0.001059957,0.002846884,-0.372321996,0.709907525,neg,ns,0.148798221,0.0000784,0.0000979,0.800641582,0.423952339,pos,ns,0.847904668,Gtdc1,Gtdc1_Intron,2,44575698,44575747,44575698,44575699,50,+,CGAACTTCTTGGAGTTGTTTGCTTTTATAATCAAGGCACAGAAGCAGAAC,"Intron (Gtdc1-203/Gtdc1, intron 7 of 10)",2,44564412,44861622,297211,2,Gtdc1-203,285875,Gtdc1-203;Gtdc1-201;Gtdc1-207;Gtdc1-208;Gtdc1-205,Gtdc1;Gtdc1;Gtdc1;Gtdc1;Gtdc1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,43,227835,ENSMUSG00000036890,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17753,cg07349222,0.00000178,0.00000201,0.887432931,0.375533841,gain,ns,0.000000457,0.00000341,0.133856223,0.893603123,pos,ns,0.000341624,0.001000271,0.341531647,0.732934773,pos,ns,0.134934673,-0.0000312,0.0000344,-0.905926837,0.365678154,neg,ns,0.961594556,Fto,Fto_Intron,8,91625887,91625936,91625887,91625888,50,-,CGCTGGCTTGACACACAGGATGAATCCATAAAGACAGATAAGTAACTGTG,"Intron (Fto-201/Fto, intron 8 of 8)",8,91313525,91668439,354915,1,Fto-201,312362,Fto-201;Fto-205,Fto;Fto,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,26,26383,ENSMUSG00000055932,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26481,cg18663956,-0.0000355,0.00000604,-5.879100554,1.07E-08,loss,yes,-0.00000137,0.0000103,-0.133699566,0.893726901,neg,ns,0.0000536,0.003004239,0.017846241,0.985772996,pos,ns,0.006223083,-0.000027,0.000103316,-0.26163721,0.793774903,neg,ns,0.896394948,Casz1,Casz1_Intergenic_upstream,4,148748300,148748349,148748300,148748301,50,+,CGATCTACTGTATATTTGAAATGGATTTAATTTTAGATCACGCACTATGG,Distal Intergenic,4,148804429,148945129,140701,1,Casz1-201,-56080,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,14,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18821,cg25173429,0.0000106,0.00000396,2.676703905,0.007830619,gain,ns,-0.0000009,0.00000674,-0.133600448,0.893805217,neg,ns,0.000887122,0.001973234,0.449577616,0.653329207,pos,ns,0.184867926,-0.000046,0.0000679,-0.677147327,0.498817481,neg,ns,0.919210959,E130114P18Rik,E130114P18Rik_Intron,4,97581946,97581995,97581994,97581995,50,-,AGGTGTCTTATCTCCCGTGAGTTAGCATCAGATGAAGCTTGCTGACAGCG,"Intron (E130114P18Rik-207/E130114P18Rik, intron 1 of 4)",4,97568133,97584596,16464,2,E130114P18Rik-207,2601,E130114P18Rik-207;E130114P18Rik-201;E130114P18Rik-203;E130114P18Rik-202;E130114P18Rik-206;E130114P18Rik-204;E130114P18Rik-209;E130114P18Rik-208,E130114P18Rik;E130114P18Rik;E130114P18Rik;E130114P18Rik;E130114P18Rik;E130114P18Rik;E130114P18Rik;E130114P18Rik,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,24,319865,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4835,cg07290866,0.00000457,0.00000469,0.973002587,0.331310619,gain,ns,0.00000106,0.00000797,0.13357023,0.893829094,pos,ns,-0.003427316,0.002335343,-1.467585494,0.143230673,neg,ns,0.843963968,0.0000427,0.0000803,0.531646259,0.595351777,pos,ns,0.74089648,Ctnnd2,Ctnnd2_Exon,15,30905733,30905782,30905781,30905782,50,+,TAGTCAAACCCTACCTCACACTGCTCTCTGAGTGCTCAAATCCAGACACG,"Exon (Ctnnd2-201/Ctnnd2, exon 15 of 23)",15,30172593,31029341,856749,1,Ctnnd2-201,733140,Ctnnd2-201;Ctnnd2-203,Ctnnd2;Ctnnd2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,10,18163,ENSMUSG00000022240,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23621,cg17942031,0.00000189,0.00000179,1.055472508,0.292031152,gain,ns,-0.000000406,0.00000304,-0.133556716,0.893839772,neg,ns,0.000640735,0.000890386,0.719614168,0.472304744,pos,ns,0.325777693,0.0000188,0.0000306,0.613479695,0.540009069,pos,ns,0.03513841,Dll4,Dll4_Intron,2,119327422,119327471,119327422,119327423,50,-,CGAATTCCGCTCCTTTGGAAAGGGAATAATGGCTTTGGGATGTTGTTCTG,"Intron (Dll4-201/Dll4, intron 3 of 10)",2,119325784,119335962,10179,1,Dll4-201,1638,Dll4-201;Dll4-202,Dll4;Dll4,0;-1067,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,20,54485,ENSMUSG00000027314,conserved gene but different region,2,119327100,119327430,331,*,331,31,0.637462236,0.947985957,0.093655589,5.80E-23,CpGisland,TRUE,U3,Pr-B
16903,cg25776155,0.0000155,0.00000428,3.618641799,0.000345702,gain,ns,-0.000000971,0.00000727,-0.133462282,0.893914388,neg,ns,0.004694539,0.002130518,2.203473508,0.0282965,pos,ns,1.548267279,-0.000131198,0.0000733,-1.790655638,0.074324193,neg,ns,0.83898948,Eif4e2,Eif4e2_Exon,1,87227806,87227855,87227854,87227855,50,-,CAGGCAGGCTGGGCCCCCAAAGGCTCCTTTTTCAAAACCTCTGGAAGCCG,"Exon (Eif4e2-206/Eif4e2, exon 7 of 7)",1,87213914,87228856,14943,1,Eif4e2-206,13892,Eif4e2-205;Eif4e2-206;Eif4e2-201;Eif4e2-202;Eif4e2-207;Eif4e2-203;Eif4e2-208;Eif4e2-204,Eif4e2;Eif4e2;Eif4e2;Eif4e2;Eif4e2;Eif4e2;Eif4e2;Eif4e2,0;0;0;0;0;0;13827;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,6,26987,ENSMUSG00000026254,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14384,cg12749937,-0.0000243,0.00000474,-5.123577827,0.000000528,loss,yes,0.00000107,0.00000806,0.13336491,0.893991327,pos,ns,-0.002578987,0.002360042,-1.092771836,0.275342466,neg,ns,0.560126803,-0.0000369,0.0000812,-0.454325793,0.649912298,neg,ns,0.932439071,Gm18494,Gm18494_Intergenic_upstream,2,75425279,75425328,75425327,75425328,50,+,GACAATAAAAAATTCAATGGCTTGGTAATTACCAATCACTTTGGACATCG,Distal Intergenic,2,75302072,75303225,1154,2,Gm18494-201,-122054,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,6,100417269,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23276,cg02449289,0.0000507,0.00000686,7.392534156,1.35E-12,gain,yes,-0.00000155,0.0000117,-0.133335557,0.894014521,neg,ns,-0.001128696,0.003413329,-0.330672982,0.741114895,neg,ns,0.130114458,0.0000531,0.000117384,0.452696984,0.651083602,pos,ns,0.802961689,Eri3,Eri3_Intron,4,117645208,117645257,117645256,117645257,50,-,TTAAAGGCGCTAATGGCAAAGCTCCCTGTTACACAGGGGGCCACCCGCCG,"Intron (Eri3-201/Eri3, intron 7 of 8)",4,117550365,117674297,123933,1,Eri3-201,94843,Eri3-201;Eri3-206;Eri3-203,Eri3;Eri3;Eri3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,82,97,140546,ENSMUSG00000033423,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23352,cg11345132,-0.0000183,0.00000543,-3.379054904,0.000820293,loss,ns,-0.00000123,0.00000922,-0.133322627,0.894024738,neg,ns,-0.007035148,0.002700652,-2.604980841,0.009630911,neg,ns,2.016332626,0.00012643,0.0000929,1.361291535,0.174410215,pos,ns,0.865638898,Gm4321,Gm4321_Intergenic_upstream,3,118126842,118126891,118126842,118126843,50,+,CGGATGTGTTGTTAAAGCACAGTGGGTTGTTTGAAGTTTACAAGTTTGTT,Distal Intergenic,3,117888573,117889014,442,2,Gm4321-201,-237828,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,4,100043260,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11659,cg19987205,-0.00000177,0.00000144,-1.23534667,0.217636904,loss,ns,0.000000325,0.00000244,0.133268873,0.894067212,pos,ns,0.000834318,0.000714872,1.167086133,0.244072536,pos,ns,0.612481087,-0.0000197,0.0000246,-0.802029084,0.423150514,neg,ns,0.968270289,Parp6,Parp6_threeUTR,9,59650002,59650051,59650002,59650003,50,-,CGGAACTCAGGTTTACACAAACTGAGGGGGCCCCAGCCCTCGTACCACCC,3' UTR,9,59617284,59650285,33002,1,Parp6-201,32718,Parp6-201;Parp6-202;Parp6-208;Parp6-203;Parp6-210;Parp6-205;Parp6-212,Parp6;Parp6;Parp6;Parp6;Parp6;Parp6;Parp6,0;0;0;0;0;0;1805,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,5,67287,ENSMUSG00000025237,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6038,cg11355925,0.0000196,0.00000589,3.329597607,0.000974664,gain,ns,0.00000133,0.00001,0.133231857,0.894096461,pos,ns,0.003694844,0.002933901,1.25936184,0.208847054,pos,ns,0.680171646,-0.000000758,0.000100897,-0.00751688,0.994007289,neg,ns,0.014945878,Cxxc5,Cxxc5_Intergenic_downstream,18,35887836,35887885,35887836,35887837,50,-,CGCCCGCTTATCTGATCTGCGGCTAATTGAAACTCCCTGCTCGCGAAGGT,Distal Intergenic,18,35854738,35858619,3882,1,Cxxc5-205,33147,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,49,67393,ENSMUSG00000046668,conserved gene but different region,18,35887596,35887837,242,*,242,21,0.702479339,0.70378064,0.08677686,5.36E-15,CpGisland,TRUE,U3,Pr-B
14383,cg03219317,-0.000000875,0.00000184,-0.476870554,0.633790281,loss,ns,0.000000415,0.00000312,0.1330979,0.894202312,pos,ns,-0.000439796,0.000913645,-0.481363871,0.630597513,neg,ns,0.200247747,0.00000023,0.0000314,0.007316374,0.994167136,pos,ns,0.964853866,Gm18494,Gm18494_Intergenic_upstream,2,75425265,75425314,75425265,75425266,50,-,CGCAATGATAAATTGACAATAAAAAATTCAATGGCTTGGTAATTACCAAT,Distal Intergenic,2,75302072,75303225,1154,2,Gm18494-201,-122089,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,6,100417269,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
177,cg15709925,-0.000000915,0.00000188,-0.486754282,0.626776434,loss,ns,0.000000425,0.00000319,0.133012109,0.894270103,pos,ns,0.001734117,0.000935095,1.854481474,0.064619798,pos,ns,1.189634406,-0.0000498,0.0000322,-1.549738589,0.122224537,neg,ns,0.065167027,Tfap4,Tfap4_fiveUTR,16,4559839,4559888,4559839,4559840,50,+,CGGAGTAAGGAATTGCATGTAAACAAAGGACTATTTGCAGCGCCCCCCGG,Promoter (<=1kb),16,4544661,4559854,15194,2,Tfap4-201,0,Tfap4-201;Tfap4-203,Tfap4;Tfap4,0;-1056,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,9,83383,ENSMUSG00000005718,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
23806,cg03388263,0.0000013,0.00000199,0.653694652,0.513793134,gain,ns,0.000000449,0.00000337,0.132956896,0.894313732,pos,ns,0.000279629,0.000988647,0.282839976,0.777488275,pos,ns,0.109306152,0.0000331,0.000034,0.974996657,0.330322113,pos,ns,0.031743064,Lhx5,Lhx5_Promoter,5,120427789,120427838,120427837,120427838,50,-,TCTTTGCGGCAAAACAGTTTCTCAGTGGTACACCAGTATAATTTTTCACG,Promoter (3-4kb),5,120431699,120441223,9525,1,Lhx5-201,-3910,Lhx5-201,Lhx5,0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,7,14,16873,ENSMUSG00000029595,mapped to different genes,5,120427837,120427983,147,*,147,15,0.544217687,1.381578947,0.102040816,6.81E-12,CpGisland,TRUE,U13,Hc-P
24649,cg06346608,-0.0000299,0.00000618,-4.839868176,0.00000205,loss,ns,-0.0000014,0.0000105,-0.132941244,0.894326101,neg,ns,-0.006166885,0.003077234,-2.004035323,0.045935974,neg,ns,1.337847072,0.000262978,0.000105826,2.4850045,0.013482221,pos,ns,0.928249894,Parp11,Parp11_Exon,6,127471541,127471590,127471589,127471590,50,-,CTTAAAGCCGGATACCAACAGTCAGTGTTCAGTTAGCAGTGAAGATATCG,"Exon (Parp11-204/Parp11, exon 4 of 7)",6,127446840,127494240,47401,1,Parp11-202,24701,Parp11-202;Parp11-204;Parp11-206;Parp11-209;Parp11-205;Parp11-203;Parp11-201;Parp11-210;Parp11-208,Parp11;Parp11;Parp11;Parp11;Parp11;Parp11;Parp11;Parp11;Parp11,0;0;0;0;17875;0;0;0;-2556,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,101187,ENSMUSG00000037997,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16383,cg11278996,0.0000608,0.0000179,3.4043747,0.000750392,gain,ns,0.00000403,0.0000304,0.132869187,0.894383041,pos,ns,0.021931099,0.008892735,2.466181674,0.014197111,pos,ns,1.847800028,-0.000551196,0.00030582,-1.802352474,0.072461201,neg,ns,0.306106177,Nfix,Nfix_Intron,8,84789084,84789133,84789084,84789085,50,-,CGTCCTCAAATAACATTTGAAGTTACTTAGCAAACTTTGTTTAGTGCCGA,"Intron (Nfix-201/Nfix, intron 1 of 8)",8,84708614,84800140,91527,2,Nfix-201,11007,Nfix-201;Nfix-202;Nfix-205,Nfix;Nfix;Nfix,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,49,18032,ENSMUSG00000001911,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13224,cg25162272,-0.000000779,0.000000986,-0.790471283,0.42985687,loss,ns,-0.000000223,0.00000168,-0.132864685,0.894386599,neg,ns,0.000387828,0.00049076,0.790258279,0.429981044,pos,ns,0.36655069,-0.0000256,0.0000169,-1.518162288,0.129992632,neg,ns,0.974518288,Rhobtb2,Rhobtb2_Exon,14,69800758,69800807,69800758,69800759,50,+,CGCACTTGATGGTCTCTACGTTTGGCCTTTCATAATCCATGTCAGAATCC,"Exon (Rhobtb2-201/Rhobtb2, exon 2 of 10)",14,69784990,69805636,20647,2,Rhobtb2-201,4829,Rhobtb2-201;Rhobtb2-203;Rhobtb2-202;Rhobtb2-204,Rhobtb2;Rhobtb2;Rhobtb2;Rhobtb2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,246710,ENSMUSG00000022075,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26072,cg14641268,0.0000426,0.00000484,8.815669714,8.73E-17,gain,yes,-0.00000109,0.00000822,-0.132847685,0.894400032,neg,ns,0.006506671,0.002407906,2.702210807,0.007267385,pos,ns,2.138621816,-0.000155073,0.0000828,-1.872682352,0.062053353,neg,ns,0.133109082,Pak3,Pak3_Intron,X,143664237,143664286,143664237,143664238,50,+,CGCTTCCTGCCTGGAAACAAAAGATTGGTCCCCAGTAGCCCACTCAGGGC,"Intron (Pak3-201/Pak3, intron 1 of 15)",20,143518591,143797792,279202,1,Pak3-201,145646,Pak3-201;Pak3-207;Pak3-205;Pak3-206;Pak3-209;Pak3-208;Pak3-204;Pak3-202;Pak3-203,Pak3;Pak3;Pak3;Pak3;Pak3;Pak3;Pak3;Pak3;Pak3,0;0;0;-87;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,9,18481,ENSMUSG00000031284,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21618,cg02524112,-0.0000117,0.00000437,-2.667984001,0.008031999,loss,ns,0.000000986,0.00000743,0.132777939,0.894455147,pos,ns,-0.003410577,0.002176063,-1.567315282,0.118061178,neg,ns,0.927892888,0.000163198,0.0000748,2.180779801,0.02995117,pos,ns,0.912894584,Zfhx3,Zfhx3_Intron,8,108594097,108594146,108594145,108594146,50,-,TTGCTTATAGCTGGTCCAAGCTAATGATATGTGTTTTGGCCGGGATCCCG,"Intron (Zfhx3-204/Zfhx3, intron 4 of 15)",8,107942644,108961630,1018987,1,Zfhx3-204,651453,Zfhx3-204,Zfhx3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,114,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16289,cg08715005,-0.00000288,0.00000113,-2.559768874,0.010948255,loss,ns,-0.000000254,0.00000191,-0.132696544,0.894519467,neg,ns,0.000176552,0.000560521,0.314978897,0.752989585,pos,ns,0.123211031,-0.0000136,0.0000193,-0.703370918,0.482352547,neg,ns,0.968375666,Lrpprc,Lrpprc_Intron,17,84716511,84716560,84716559,84716560,50,-,TCTTGATAAGCAGGTAATTTGCTAAATGGACTCCTTTATCCAAGTATTCG,"Intron (Lrpprc-201/Lrpprc, intron 31 of 37)",17,84705247,84790558,85312,2,Lrpprc-201,73998,Lrpprc-201;Lrpprc-207,Lrpprc;Lrpprc,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,15,72416,ENSMUSG00000024120,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7147,cg07456914,0.000000393,0.00000188,0.209450902,0.834233835,gain,ns,0.000000423,0.00000319,0.132629873,0.894572153,pos,ns,0.002153176,0.00093428,2.304638062,0.021847444,pos,ns,1.660599357,-0.0000597,0.0000321,-1.857063122,0.064250497,neg,ns,0.089588271,Lcor,Lcor_fiveUTR,19,41483497,41483546,41483545,41483546,50,-,TGTGTGTTTTGTCTGTTTTTCTCTCCCAAGGTCCCGTTTCCCTCTGTGCG,Promoter (<=1kb),19,41482637,41562261,79625,1,Lcor-201,860,Lcor-201;Lcor-204;Lcor-206,Lcor;Lcor;Lcor,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,6,25,212391,ENSMUSG00000025019,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
7767,cg02471195,0.00000715,0.00000649,1.102649366,0.271034742,gain,ns,0.00000146,0.000011,0.132505989,0.894670051,pos,ns,0.003464114,0.003228132,1.073101617,0.284060147,pos,ns,0.546589693,-0.000363885,0.000111015,-3.277792341,0.001165052,neg,ns,0.864158921,Arhgap15,Arhgap15_Intron,2,44208337,44208386,44208337,44208338,50,+,CGGCCTATTTGGTATGGTCTTTTTATTGGAAAATGACAAAGGGGTTATAG,"Intron (Arhgap15-203/Arhgap15, intron 11 of 14)",2,43748824,44395953,647130,1,Arhgap15-203,459513,Arhgap15-203;Arhgap15-202;Arhgap15-201,Arhgap15;Arhgap15;Arhgap15,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,72,78,76117,ENSMUSG00000049744,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9270,cg08286633,-0.0000036,0.00000164,-2.191276525,0.029175708,loss,ns,0.00000037,0.00000279,0.132471902,0.894696989,pos,ns,0.001127037,0.000818285,1.377316716,0.169407981,pos,ns,0.771066134,-0.0000515,0.0000281,-1.828806127,0.068389295,neg,ns,0.965983206,Foxp4,Foxp4_Intron,17,47872575,47872624,47872575,47872576,50,-,CGCTTTGCAAATGAGAATGACCCCAATTTCCGAGGATGGCCTCACCGGGG,"Intron (Foxp4-204/Foxp4, intron 13 of 16)",17,47867133,47924645,57513,2,Foxp4-204,52021,Foxp4-204;Foxp4-203;Foxp4-201;Foxp4-202,Foxp4;Foxp4;Foxp4;Foxp4,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,25,74123,ENSMUSG00000023991,conserved gene and region,17,47872440,47872721,282,*,282,26,0.563829787,1.163809524,0.092198582,3.73E-19,CpGisland,TRUE,U10,Tr-S
8210,cg26957181,-0.0000141,0.00000386,-3.64329099,0.000315445,loss,ns,-0.000000867,0.00000656,-0.132247342,0.894874451,neg,ns,0.000292499,0.001920958,0.152267031,0.87907538,pos,ns,0.055973883,0.0000795,0.0000661,1.203017419,0.229887543,pos,ns,0.878169839,Zcchc7,Zcchc7_Intron,4,44852075,44852124,44852075,44852076,50,-,CGGGCCCACAGGCAGGCTGGCCTTTTATGCTTGCCGACGCAGATGGTCCC,"Intron (Zcchc7-203/Zcchc7, intron 2 of 8)",4,44756568,44932203,175636,1,Zcchc7-203,95507,Zcchc7-203;Zcchc7-207;Zcchc7-205;Zcchc7-201,Zcchc7;Zcchc7;Zcchc7;Zcchc7,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,27,27,319885,ENSMUSG00000035649,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23558,cg14332252,0.00000425,0.00000297,1.429000742,0.154010878,gain,ns,-0.000000667,0.00000505,-0.132192666,0.894917661,neg,ns,-0.001908129,0.001479156,-1.290011852,0.198008014,neg,ns,0.703317233,0.0000745,0.0000509,1.46518843,0.143882978,pos,ns,0.933284191,Dyrk2,Dyrk2_Exon,10,118860616,118860665,118860616,118860617,50,-,CGTGCTGGTGGACTTTGTGATCGTAGGCCTTGACCACCTGCCCAAAGCTC,"Exon (Dyrk2-201/Dyrk2, exon 3 of 3)",10,118855603,118869149,13547,2,Dyrk2-201,8484,Dyrk2-201;Dyrk2-202;Dyrk2-203,Dyrk2;Dyrk2;Dyrk2,0;9544;7634,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,69181,ENSMUSG00000028630,conserved gene and region,10,118860454,118860617,164,*,164,12,0.567073171,0.91026827,0.073170732,6.78E-08,CpGisland,TRUE,U10,Tr-S
7904,cg15881757,-0.0000405,0.00000712,-5.687761107,2.98E-08,loss,yes,0.0000016,0.0000121,0.132177114,0.894929951,pos,ns,-0.005667531,0.003544603,-1.598918633,0.110857364,neg,ns,0.955235453,-0.0000266,0.000121899,-0.217846587,0.827691969,neg,ns,0.775838976,Ebf1,Ebf1_Intron,11,44626960,44627009,44626960,44626961,50,-,CGGGCCTGCTTAGCTGCTGAGCTGAAATTACATCTTTGTAATTTGTTCAC,"Intron (Ebf1-203/Ebf1, intron 4 of 15)",11,44617317,45004995,387679,1,Ebf1-203,9643,Ebf1-203;Ebf1-202;Ebf1-201;Ebf1-207;Ebf1-204;Ebf1-205,Ebf1;Ebf1;Ebf1;Ebf1;Ebf1;Ebf1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,80,13591,ENSMUSG00000057098,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19348,cg10049548,0.0000535,0.00000786,6.809220662,5.10E-11,gain,yes,-0.00000176,0.0000133,-0.131938965,0.895118159,neg,ns,0.000996204,0.003910656,0.254740915,0.799092119,pos,ns,0.097403152,-0.000156935,0.000134487,-1.166917391,0.244140578,neg,ns,0.70153338,C1ql4,C1ql4_Promoter,15,99089190,99089239,99089190,99089191,50,+,CGCGCTGCAGAGAGACACCCAGGTCCGTGTTTGGACTCCAATGTGACATA,Promoter (1-2kb),15,99084086,99087817,3732,2,C1ql4-201,-1373,C1ql4-201;Dnajc22-202,C1ql4;Dnajc22,-1373;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,2,239659,ENSMUSG00000001076,conserved gene and region,15,99089170,99089287,118,*,118,10,0.584745763,1.040564374,0.084745763,0.000000309,CpGisland,TRUE,U3,Pr-B
26650,cg16002577,-0.0000378,0.00000832,-4.538409643,0.00000812,loss,ns,-0.00000186,0.0000141,-0.131859266,0.895181146,neg,ns,-0.000943627,0.00414245,-0.227794473,0.819956193,neg,ns,0.086209349,-0.000351943,0.000142459,-2.470495593,0.014030364,neg,ns,0.812180925,Gm42647,Gm42647_Intron,3,149349849,149349898,149349897,149349898,50,-,ATGCCAAACAGTGCCATTTTATTACTGTGGGAAGCTGGAAGTCATTTCCG,"Intron (Gm30382-202/Gm30382-202, intron 2 of 3)",3,149210271,149210729,459,1,Gm42647-201,139627,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,5,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22282,cg19568989,-0.0000306,0.00000984,-3.112663444,0.002026898,loss,ns,-0.0000022,0.0000167,-0.131815459,0.895215769,neg,ns,-0.014344142,0.004898797,-2.928094972,0.003663061,neg,ns,2.4361558,0.000186736,0.000168469,1.108425146,0.268537459,pos,ns,0.747555322,Arpp21,Arpp21_Intergenic_upstream,9,112861338,112861387,112861338,112861339,50,-,CGTGGGAGAATTAGATTTAAGTGAAAAAGGATGTTTCCTAGGAAACTACA,Distal Intergenic,9,112187629,112235938,48310,2,Arpp21-219,-625449,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,4,74100,ENSMUSG00000032503,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4421,cg16040140,-0.0000104,0.00000416,-2.502274245,0.012854623,loss,ns,0.000000932,0.00000707,0.131810494,0.895219692,pos,ns,-0.000594394,0.002072084,-0.286858244,0.774412498,neg,ns,0.111027647,-0.0000785,0.0000713,-1.101275035,0.271631312,neg,ns,0.92283559,Themis,Themis_Intron,10,28870790,28870839,28870838,28870839,50,-,AAAAAAGTCCCATAGAGCTTTTCTTATTACCTTTTCATTGACTCTCTCCG,"Intron (Themis-201/Themis, intron 5 of 5)",10,28668360,28883815,215456,1,Themis-201,202430,Themis-201;Themis-204,Themis;Themis,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,210757,ENSMUSG00000049109,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7451,cg20302975,0.00000575,0.00000815,0.705217272,0.481204573,gain,ns,0.00000182,0.0000138,0.131779325,0.895244326,pos,ns,-0.009809789,0.004056303,-2.418406075,0.016164638,neg,ns,1.791434019,0.000242447,0.000139496,1.738021207,0.083200065,pos,ns,0.146998458,Pou3f3,Pou3f3_Exon,1,42693472,42693521,42693472,42693473,50,+,CGCTATCACGTTTCATCAGGCCACCTGAGACTGCTTTTGAAAGCGTGTAC,Promoter (1-2kb),1,42694925,42703176,8252,1,Pou3f3-202,-1404,Pou3f3-202;Pou3f3-201,Pou3f3;Pou3f3,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,37,18993,ENSMUSG00000045515,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
3737,cg01290613,0.0000251,0.00000281,8.936554018,3.67E-17,gain,yes,-0.00000063,0.00000478,-0.131771458,0.895250543,neg,ns,0.001562001,0.001399688,1.115963772,0.265301925,pos,ns,0.576259598,0.0000946,0.0000481,1.964599608,0.050353551,pos,ns,0.065685704,Pou2f2,Pou2f2_Promoter,7,25179921,25179970,25179921,25179922,50,-,CGGCTCCCACCTTGTCCCCATGGCAACCCCGGGCCCAAGGATGCTCAGAG,Promoter (<=1kb),7,25120618,25179726,59109,2,Pou2f2-208,-244,Pou2f2-208,Pou2f2,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,11,29,18987,ENSMUSG00000008496,conserved gene but different region,7,25179573,25180057,485,*,485,61,0.771134021,0.853947179,0.125773196,3.02E-53,CpGisland,TRUE,U3,Pr-B
23979,cg15378021,-0.00000286,0.00000813,-0.351743198,0.725269831,loss,ns,0.00000182,0.0000138,0.131692526,0.895312926,pos,ns,-0.004800502,0.004044605,-1.186890269,0.236179645,neg,ns,0.626757535,-0.0000186,0.000139094,-0.133724709,0.893707035,neg,ns,0.762562504,Vipr1,Vipr1_Exon,9,121664622,121664671,121664670,121664671,50,+,CGTCTCCTTCTTCTCTGAGCGGAAGTACTTCTGGGGGTACATACTCATCG,"Exon (Vipr1-201/Vipr1, exon 7 of 13)",9,121642716,121672954,30239,1,Vipr1-201,21906,Vipr1-201;Vipr1-203;Vipr1-202;Vipr1-204,Vipr1;Vipr1;Vipr1;Vipr1,0;21571;0;-4042,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,22354,ENSMUSG00000032528,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14113,cg00296428,0.0000367,0.00000545,6.739621009,7.75E-11,gain,yes,0.00000122,0.00000926,0.131677357,0.895324914,pos,ns,0.008113041,0.002713493,2.989887943,0.003014298,pos,ns,2.5208138,-0.000183077,0.0000933,-1.961887369,0.050670099,neg,ns,0.124524882,Hoxd11,Hoxd11_Exon,2,74684022,74684071,74684070,74684071,50,+,CGGATGCTCAACCTCACTGACCGGCAAGTCAAAATCTGGTTCCAGAATCG,"Exon (Hoxd11-201/Hoxd11, exon 2 of 2)",2,74679557,74687016,7460,1,Hoxd11-201,4465,Hoxd11-201;Hoxd11-202,Hoxd11;Hoxd11,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,14,15431,ENSMUSG00000042499,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
21422,cg26058379,0.000000114,0.00000197,0.057710657,0.954016285,gain,ns,-0.000000441,0.00000335,-0.131484062,0.895477685,neg,ns,0.000105544,0.000982665,0.107405786,0.914536542,pos,ns,0.038798937,-0.0000258,0.0000338,-0.76266199,0.446244931,neg,ns,0.970594344,Zswim6,Zswim6_Exon,13,107730333,107730382,107730381,107730382,50,+,GAGGAGTGAATGTTTTTCTGGATGGATTCTAATACTGTTTCCAGCCTCCG,"Exon (Zswim6-204/Zswim6, exon 11 of 13)",13,107724617,107890064,165448,2,Zswim6-204,159682,Zswim6-204;Zswim6-201;Zswim6-203;Zswim6-202,Zswim6;Zswim6;Zswim6;Zswim6,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,14,26,67263,ENSMUSG00000032846,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2240,cg11403860,0.0000791,0.0000202,3.91533066,0.000111055,gain,ns,-0.00000451,0.0000343,-0.131338236,0.89559294,neg,ns,0.024379239,0.010056057,2.424333896,0.01590809,pos,ns,1.798381949,-0.000386252,0.000345827,-1.116894685,0.264904262,neg,ns,0.470218038,Vps41,Vps41_Intron,13,18744096,18744145,18744096,18744097,50,+,CGTCATACCTAGTTATGTCTGCACACCTGATGTTTTATTAACCAGTATTG,"Intron (Vps41-204/Vps41, intron 3 of 4)",13,18717286,18748999,31714,1,Vps41-204,26810,Vps41-204;Vps41-201,Vps41;Vps41,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,4,218035,ENSMUSG00000041236,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16320,cg18057032,-0.0000154,0.00000503,-3.06289129,0.002384335,loss,ns,-0.00000112,0.00000854,-0.131258516,0.895655949,neg,ns,-0.00407824,0.00250244,-1.629705691,0.104179364,neg,ns,0.9822183,0.0000152,0.0000861,0.176761976,0.859810784,pos,ns,0.826855351,Mrm1,Mrm1_Intergenic_downstream,11,84744769,84744818,84744817,84744818,50,+,TAGTTTTCATTTTCCGCTCCCCATGCATCAAAAAACTTACAACGGGCTCG,Distal Intergenic,11,84814743,84815390,648,2,Mrm1-203,70572,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,37,42,217038,ENSMUSG00000018405,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8578,cg26192895,0.0000818,0.0000118,6.91607401,2.66E-11,gain,yes,0.00000264,0.0000201,0.131224978,0.895682458,pos,ns,0.012262765,0.005883354,2.084315185,0.037949921,pos,ns,1.420789125,0.000004,0.000202328,0.019759998,0.98424754,pos,ns,0.073985279,Pcdh10,Pcdh10_Exon,3,45381862,45381911,45381862,45381863,50,-,CGGAAGCATTTTGTCCAACGAGGTAAGGCTGAAGCGAAAGGACCACCATC,"Exon (Pcdh10-204/Pcdh10, exon 1 of 1)",3,45378398,45383035,4638,1,Pcdh10-204,3464,Pcdh10-204;Pcdh10-203;Pcdh10-201;Pcdh10-202;Pcdh10-205,Pcdh10;Pcdh10;Pcdh10;Pcdh10;Pcdh10,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,5,18526,ENSMUSG00000049100,conserved gene and region,3,45381732,45381881,150,*,150,10,0.58,0.816993464,0.066666667,0.00000279,CpGisland,TRUE,U13,Hc-P
978,cg07169519,-0.0000012,0.0000016,-0.745406034,0.456591084,loss,ns,0.000000357,0.00000272,0.131132781,0.895755329,pos,ns,0.000433864,0.000798027,0.543670757,0.587058817,pos,ns,0.231318385,-0.0000154,0.0000274,-0.560730494,0.575386318,neg,ns,0.955524529,Qk,Qk_threeUTR,17,10213381,10213430,10213429,10213430,50,+,TTGGTAAGGATGGACACGCATATCGTGCCTTCGAACTTTAGTAGCCACCG,3' UTR,17,10202601,10319380,116780,2,Qk-204,105950,Qk-204;Qk-202;Qk-203;Qk-201;Qk-206;Qk-205,Qk;Qk;Qk;Qk;Qk;Qk,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,12,17,19317,ENSMUSG00000062078,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7200,cg14621603,-0.0000337,0.00000623,-5.407108455,0.000000128,loss,yes,0.00000139,0.0000106,0.131018151,0.895845933,pos,ns,-0.002319288,0.003098583,-0.748499389,0.454726496,neg,ns,0.34224974,0.0001646,0.00010656,1.544665462,0.1234474,pos,ns,0.902643843,Jade1,Jade1_Exon,3,41604918,41604967,41604966,41604967,50,-,TAGCCAAGCGGGAGCAGGATGTCTTATTTAGGAGGCTGCAGCTGTTCACG,"Exon (Jade1-201/Jade1, exon 9 of 11)",3,41555731,41616864,61134,1,Jade1-201,49187,Jade1-201;Jade1-202;Jade1-204;Jade1-203;Jade1-206;Jade1-213;Jade1-205;Jade1-208;Jade1-207,Jade1;Jade1;Jade1;Jade1;Jade1;Jade1;Jade1;Jade1;Jade1,0;0;0;0;0;13245;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,Exon,6,16,269424,ENSMUSG00000025764,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16527,cg23081193,0.0000363,0.00000568,6.391620258,6.02E-10,gain,yes,-0.00000126,0.00000965,-0.130986843,0.895870678,neg,ns,0.001544907,0.002826353,0.546608038,0.585041255,pos,ns,0.232813508,-0.0000293,0.0000972,-0.301539802,0.763205078,neg,ns,0.05168416,Btbd11,Btbd11_Exon,10,85387486,85387535,85387486,85387487,50,+,CGCCTCTAGCTGACTCCATGCACAGCCGGCACAACAGCTTTGACACTGTC,Promoter (<=1kb),10,85386814,85660292,273479,1,Btbd11-203,672,Btbd11-203;Btbd11-201,Btbd11;Btbd11,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,13,13,74007,ENSMUSG00000020042,conserved gene and region,10,85387046,85387614,569,*,569,49,0.65202109,0.810258646,0.086115993,4.08E-34,CpGisland,TRUE,U3,Pr-B
23931,cg19635507,0.00000248,0.00000231,1.07338283,0.283934207,gain,ns,-0.000000514,0.00000392,-0.130952481,0.895897839,neg,ns,0.000590736,0.001149244,0.514021585,0.607603107,pos,ns,0.216380014,0.00000461,0.0000395,0.116528917,0.907308824,pos,ns,0.89978722,Trp53bp1,Trp53bp1_threeUTR,2,121208343,121208392,121208391,121208392,50,-,CTACCCAGGTACCTGGTTCCAGTGGTCCGAGAAGGTGGGCGGCCCCTTCG,3' UTR,2,121193281,121211975,18695,2,Trp53bp1-211,3583,Trp53bp1-211;Trp53bp1-201;Trp53bp1-202;Trp53bp1-216;Trp53bp1-217;Trp53bp1-218;Trp53bp1-210;Trp53bp1-206;Trp53bp1-205;Trp53bp1-214,Trp53bp1;Trp53bp1;Trp53bp1;Trp53bp1;Trp53bp1;Trp53bp1;Trp53bp1;Trp53bp1;Trp53bp1;Trp53bp1,0;0;0;0;0;-581;0;12849;12840;10044,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,5,5,27223,ENSMUSG00000043909,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13026,cg06860536,-0.00001,0.00000864,-1.161869555,0.246182215,loss,ns,0.00000192,0.0000147,0.13094924,0.895900401,pos,ns,-0.000242432,0.004300709,-0.05637029,0.955083139,neg,ns,0.019958822,-0.0000762,0.000147901,-0.515254246,0.606742588,neg,ns,0.796152995,Gm5342,Gm5342_Intergenic_downstream,7,69226496,69226545,69226496,69226497,50,-,CGCCTGTACAATTTCAGCTCAAGTGTTATTACTGACAAGTCAAACAATGG,Distal Intergenic,7,69209884,69210886,1003,1,Gm5342-201,16661,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,7,384741,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13508,cg21079728,-0.000000787,0.000000823,-0.95628753,0.339672134,loss,ns,-0.000000183,0.0000014,-0.130804587,0.896014737,neg,ns,0.000417933,0.00040981,1.019822684,0.308607779,pos,ns,0.510593131,-0.00000828,0.0000141,-0.587469603,0.557316008,neg,ns,0.976176024,Dhx33,Dhx33_threeUTR,11,70995217,70995266,70995217,70995218,50,-,CGATGTTGGTTGAAATGATCACTTTGCGATAGCCCTAAAAGGAGGAAGAA,3' UTR,11,70984091,71004437,20347,2,Dhx33-202,9171,Dhx33-202;Dhx33-205;Dhx33-201;Dhx33-204;Dhx33-209;Dhx33-206;Dhx33-207;Dhx33-203;Dhx33-208,Dhx33;Dhx33;Dhx33;Dhx33;Dhx33;Dhx33;Dhx33;Dhx33;Dhx33,0;-1237;0;0;0;0;-1200;0;9171,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,2,216877,ENSMUSG00000040620,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
721,cg18809749,-0.0000077,0.00000568,-1.355587189,0.176217311,loss,ns,-0.00000126,0.00000965,-0.130750884,0.896057186,neg,ns,-0.00228856,0.002825767,-0.809889737,0.418624784,neg,ns,0.378175064,-0.000189481,0.0000972,-1.949832898,0.052097326,neg,ns,0.941905313,Nipbl,Nipbl_Exon,15,8292201,8292250,8292249,8292250,50,+,TTATTTTTAGGGCTGCCTCCTCCAAGCAGTGAGGTAATTGCTTTGTTCCG,"Exon (Nipbl-201/Nipbl, exon 46 of 47)",15,8290617,8444463,153847,2,Nipbl-201,152213,Nipbl-201,Nipbl,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,19,36,71175,ENSMUSG00000022141,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18154,cg10439174,0.0000333,0.00000663,5.025157277,0.000000852,gain,yes,0.00000147,0.0000113,0.130735646,0.896069231,pos,ns,0.002226984,0.003300732,0.67469409,0.500372997,pos,ns,0.300706135,0.000174701,0.000113512,1.539058892,0.124809992,pos,ns,0.086834299,Hsd17b12,Hsd17b12_Intron,2,94243781,94243830,94243829,94243830,50,+,AGTCACGATTCCTTCTCAGTTCGGAATGAACTGTGACTAGAGCCATGACG,"Intron (Mir670hg-205/Mir670hg-205, intron 2 of 5)",2,94032689,94157964,125276,2,Hsd17b12-201,-85817,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,14,19,56348,ENSMUSG00000027195,conserved gene but different region,2,94243768,94243904,137,*,137,10,0.525547445,1.064491065,0.072992701,0.00000123,CpGisland,TRUE,U13,Hc-P
3145,cg21041762,-0.0000759,0.0000127,-5.979614751,6.15E-09,loss,yes,0.00000281,0.0000216,0.130274153,0.896434022,pos,ns,-0.008443161,0.006314827,-1.337037545,0.182190675,neg,ns,0.739473856,-0.000132857,0.000217166,-0.611777458,0.541133411,neg,ns,0.817673932,Gm11879,Gm11879_Intergenic_downstream,4,22981659,22981708,22981707,22981708,50,-,GAACAAGGATAATCTGCTTAAAAATCTAAATCTCTAATAAATGGCTGACG,Distal Intergenic,4,22704057,22704758,702,1,Gm11879-201,277651,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,19,19,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21737,cg03160987,0.00000335,0.00000364,0.920039386,0.358267544,gain,ns,-0.000000805,0.00000618,-0.130175412,0.896512076,neg,ns,0.001646874,0.001811667,0.909038027,0.364036237,pos,ns,0.438855383,-0.0000913,0.0000623,-1.46486992,0.143969825,neg,ns,0.953318796,Zfhx3,Zfhx3_Intron,8,108942833,108942882,108942881,108942882,50,+,AGCCATCTGAGTTTTTCTAATTAAAGTGTATGAAAACAATTACTGATCCG,"Intron (Zfhx3-204/Zfhx3, intron 13 of 15)",8,107942644,108961630,1018987,1,Zfhx3-204,1000189,Zfhx3-204;Zfhx3-201,Zfhx3;Zfhx3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,114,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6650,cg27665352,-0.00000112,0.00000134,-0.83723326,0.403106438,loss,ns,-0.000000295,0.00000227,-0.130138113,0.89654156,neg,ns,-0.000469643,0.000664749,-0.706497077,0.48040973,neg,ns,0.318388205,0.00000326,0.0000229,0.142802341,0.88653906,pos,ns,0.960200707,Uri1,Uri1_Intergenic_downstream,7,37921922,37921971,37921970,37921971,50,+,AAGAGGATTCAATCACCATAATGAATCTGAGGCCAGGCAGCAATCTTCCG,Distal Intergenic,7,37961301,37962528,1228,2,Uri1-203,40557,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,19,27,19777,ENSMUSG00000030421,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8576,cg20717900,-0.000000251,0.00000907,-0.027640951,0.977966305,loss,ns,0.000002,0.0000154,0.129985448,0.896662243,pos,ns,-0.000881524,0.004513165,-0.195322743,0.845268251,neg,ns,0.073005443,-0.00000486,0.000155207,-0.031283208,0.975063813,neg,ns,0.650420746,Cdc5l,Cdc5l_Intergenic_downstream,17,45371268,45371317,45371316,45371317,50,+,CTCTTTATTGGATTATAACTAGGAGCAAAACACCCCAAACCACACAATCG,Distal Intergenic,17,45408372,45415684,7313,2,Cdc5l-202,44367,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,71702,ENSMUSG00000023932,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14738,cg15228986,0.000055,0.0000201,2.742702462,0.006447975,gain,ns,-0.00000443,0.0000341,-0.129975022,0.896670485,neg,ns,0.01928284,0.009987457,1.930705756,0.054431206,pos,ns,1.264152046,-0.000469147,0.000343468,-1.365911311,0.172956923,neg,ns,0.29090783,Gm21816,Gm21816_Intron,16,77500111,77500160,77500111,77500112,50,-,CGCACGGCTTCAGGGGAGATTGGCAGCTGGGTCAAACAAAGTCCTTCCAT,"Intron (Mir99ahg-207/Mir99ahg-207, intron 5 of 7)",16,77400847,77401208,362,1,Gm21816-201,99313,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,8,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4306,cg00386839,0.0000243,0.00000614,3.960668371,0.0000928,gain,ns,0.00000135,0.0000104,0.129871458,0.896752354,pos,ns,0.004882081,0.003053691,1.598747381,0.110895438,pos,ns,0.955086318,-0.000171575,0.000105016,-1.633800471,0.103315883,neg,ns,0.07300578,Tnik,Tnik_fiveUTR,3,28263325,28263374,28263373,28263374,50,-,CACAAGCAAAGAAGCATGTCCCATTTAAATACACCCACGCAGCCCCAGCG,Promoter (<=1kb),3,28263214,28670585,407372,1,Tnik-207,111,Tnik-207;Tnik-201;Tnik-208;Tnik-209;Tnik-212;Tnik-203;Tnik-205;Tnik-218;Tnik-202;Tnik-206;Tnik-211;Tnik-214;Tnik-215,Tnik;Tnik;Tnik;Tnik;Tnik;Tnik;Tnik;Tnik;Tnik;Tnik;Tnik;Tnik;Tnik,0;0;0;0;0;0;0;-208;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,15,665113,ENSMUSG00000027692,conserved gene and region,3,28263314,28263711,398,*,398,42,0.655778895,0.982254084,0.105527638,3.03E-33,CpGisland,TRUE,NA,NRS
16419,cg05970344,0.000147859,0.0000143,10.33361255,1.05E-21,gain,yes,0.00000316,0.0000243,0.129830253,0.896784928,pos,ns,0.001027753,0.007121505,0.144316752,0.885344126,pos,ns,0.05288789,0.000300739,0.000244908,1.227967272,0.220390796,pos,ns,0.630238218,Fbxw7,Fbxw7_Exon,3,84952473,84952522,84952473,84952474,50,-,CGTGCCTGAGCATGTCCACATTAGAATCTGTGACATACCTACCTGAAAAA,"Exon (Fbxw7-201/Fbxw7, exon 1 of 11)",3,84815268,84979198,163931,1,Fbxw7-204,137205,Fbxw7-204;Fbxw7-205;Fbxw7-203;Fbxw7-202;Fbxw7-201;Gm37240-203,Fbxw7;Fbxw7;Fbxw7;Fbxw7;Fbxw7;Gm37240,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,10,50754,ENSMUSG00000028086,conserved gene and region,3,84952336,84952492,157,*,157,11,0.592356688,0.79879741,0.070063694,0.000000442,CpGisland,TRUE,NA,NRS
25327,cg27261136,-0.00000101,0.00000156,-0.646076954,0.518707498,loss,ns,-0.000000344,0.00000265,-0.129812544,0.896798928,neg,ns,0.000866897,0.000775961,1.117191163,0.264777701,pos,ns,0.577118593,-0.0000291,0.0000267,-1.090831103,0.276194334,neg,ns,0.06839893,Arl8a,Arl8a_fiveUTR,1,135146973,135147022,135146973,135146974,50,-,CGACCATGATCGCTTTGTTCAACAAGCTGCTGGACTGGTTCAAGGCCCTA,Promoter (<=1kb),1,135146824,135156269,9446,1,Arl8a-201,149,Arl8a-201;Arl8a-203;Ptpn7-203;Ptpn7-201;Ptpn7-202,Arl8a;Arl8a;Ptpn7;Ptpn7;Ptpn7,0;-647;14273;14248;13664,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,1,68724,ENSMUSG00000026426,conserved gene and region,1,135146472,135146984,513,*,513,77,0.734892788,1.111889884,0.150097466,4.29E-74,CpGisland,TRUE,U1,Pr-A
714,cg24119802,-0.0000664,0.0000242,-2.746790022,0.006370082,loss,ns,-0.00000533,0.0000411,-0.129748008,0.896849945,neg,ns,0.009356979,0.012039257,0.777205667,0.437630113,pos,ns,0.358892802,-0.001439717,0.000414029,-3.477332876,0.00057881,neg,ns,0.67525719,Nipbl,Nipbl_Exon,15,8291255,8291304,8291303,8291304,50,-,CAGGGATCGTAAAGTCTGAACAACTTTATTAGTCAGCTTATTAGCACTCG,"Exon (Nipbl-201/Nipbl, exon 47 of 47)",15,8290617,8444463,153847,2,Nipbl-201,153159,Nipbl-201,Nipbl,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,19,36,71175,ENSMUSG00000022141,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3986,cg26710381,-0.00000848,0.00000769,-1.10274567,0.270992973,loss,ns,0.00000169,0.0000131,0.129733649,0.896861296,pos,ns,0.000895477,0.003826198,0.234038394,0.815109658,pos,ns,0.088783961,-0.000300163,0.000131583,-2.281172127,0.023216298,neg,ns,0.752237329,Gm50479,Gm50479_Intergenic_upstream,8,26205861,26205910,26205861,26205862,50,+,CGGATTGGCAGCTTGATAAATACGTCTATTGGCGATGATTTGGATTGCTC,Distal Intergenic,8,26237222,26237407,186,1,Gm50479-201,-31312,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,21,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15814,cg23620775,0.0000127,0.0000118,1.076665173,0.282467037,gain,ns,-0.00000259,0.00002,-0.129729749,0.896864379,neg,ns,0.003049417,0.005848371,0.521412953,0.602451424,pos,ns,0.220077965,-0.000308332,0.000201125,-1.533036142,0.12628683,neg,ns,0.578670162,Mef2c,Mef2c_Intron,13,83536417,83536466,83536465,83536466,50,-,TCCCTATGGTAAAACAGCATGGACAGCTCCCAACACTGCAATCAAGGACG,"Intron (Mef2c-218/Mef2c, intron 2 of 10)",13,83504034,83663343,159310,1,Mef2c-218,32383,Mef2c-218;Mef2c-228;Mef2c-221;Mef2c-229;Mef2c-201;Mef2c-202;Mef2c-207;Mef2c-231;Mef2c-222;Mef2c-223;Mef2c-227;Mef2c-217;Mef2c-213;Mef2c-214;Mef2c-215;Mef2c-226;Mef2c-216,Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,41,17260,ENSMUSG00000005583,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10547,cg06710083,0.00000633,0.00000601,1.053485868,0.292938787,gain,ns,0.00000132,0.0000102,0.129577709,0.896984574,pos,ns,-0.005841805,0.002991682,-1.952682473,0.051756927,neg,ns,1.286031514,-0.0000755,0.000102884,-0.734129288,0.463424836,neg,ns,0.822661519,Trpc4,Trpc4_Exon,3,54266347,54266396,54266347,54266348,50,+,CGACAGGTCAGACTTGAACAGGCAAGGTCCACCACCAACCATCGTCGAGT,"Exon (Trpc4-201/Trpc4, exon 4 of 11)",3,54156057,54318471,162415,1,Trpc4-201,110290,Trpc4-201;Trpc4-204;Trpc4-205;Trpc4-206,Trpc4;Trpc4;Trpc4;Trpc4,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,22066,ENSMUSG00000027748,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9952,cg26529854,0.000000125,0.00000371,0.03373333,0.97311151,gain,ns,-0.000000816,0.0000063,-0.129481857,0.897060351,neg,ns,-0.001007034,0.001846495,-0.545375734,0.585887307,neg,ns,0.232185911,-0.00000334,0.0000635,-0.05260119,0.958083548,neg,ns,0.91015935,Satb1,Satb1_Exon,17,51742779,51742828,51742827,51742828,50,+,AGGTTCTCCCACAGGGTTCTGTTTTCTGGAGAAGGATCTTCTTTCCAGCG,"Exon (Satb1-208/Satb1, exon 10 of 11)",17,51736187,51832672,96486,2,Satb1-208,89844,Satb1-208;Satb1-213;Satb1-204;Satb1-214;Satb1-203;Satb1-211;Satb1-207;Satb1-205,Satb1;Satb1;Satb1;Satb1;Satb1;Satb1;Satb1;Satb1,0;0;0;0;0;0;0;-513,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,36,20230,ENSMUSG00000023927,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20451,cg23852343,-0.0000107,0.00000198,-5.382766601,0.000000145,loss,yes,0.000000436,0.00000337,0.129397965,0.897126674,pos,ns,0.000779924,0.000987832,0.789531153,0.43040509,pos,ns,0.366122601,-0.00012971,0.000034,-3.818215326,0.000162333,neg,ns,0.944331354,Csde1,Csde1_threeUTR,3,103044599,103044648,103044647,103044648,50,+,CCAGCTAAAATCGTTTTTCCTTCTCATCAGAATGACCCATTGCCAGGACG,3' UTR,3,103020426,103058186,37761,1,Csde1-201,24173,Csde1-201;Csde1-211;Csde1-207;Csde1-214;Csde1-215;Csde1-216;Csde1-206;Csde1-212;Csde1-213;Csde1-205;Csde1-217;Csde1-202;Csde1-210;Csde1-209,Csde1;Csde1;Csde1;Csde1;Csde1;Csde1;Csde1;Csde1;Csde1;Csde1;Csde1;Csde1;Csde1;Csde1,0;0;0;0;0;0;0;0;0;0;0;0;0;1057,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,10,229663,ENSMUSG00000068823,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9257,cg11209880,-0.0000411,0.0000113,-3.622905371,0.00034028,loss,ns,0.00000249,0.0000193,0.12935176,0.897163202,pos,ns,-0.000584018,0.005645421,-0.103449778,0.917672899,neg,ns,0.037312094,-0.000309031,0.000194146,-1.591747015,0.112460722,neg,ns,0.757229081,Gm47213,Gm47213_Intergenic_downstream,9,47862590,47862639,47862590,47862591,50,-,CGATTGGCGAGAGCTGGTCAGTTATCACCAGAAGGTCCTGACAACACACT,Distal Intergenic,9,47947880,47948161,282,2,Gm47213-201,85571,Cadm1-206,Cadm1,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,7,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21993,cg04153971,0.00000446,0.00000302,1.479912181,0.139912202,gain,ns,0.000000663,0.00000512,0.129315585,0.897191801,pos,ns,0.00060831,0.001501045,0.405257912,0.685567469,pos,ns,0.163949798,-0.000069,0.0000516,-1.337599203,0.182007621,neg,ns,0.946049559,Ccdc34,Ccdc34_Exon,2,110032374,110032423,110032374,110032375,50,-,CGTGAAAAAAGAAAGATAATTGCTGAAGAAAAGCACAAGGAATGGGTTCA,"Exon (Ccdc34-201/Ccdc34, exon 3 of 6)",2,110017817,110045316,27500,1,Ccdc34-201,14557,Ccdc34-201;Ccdc34-205;Ccdc34-204;Ccdc34-203;Ccdc34-202,Ccdc34;Ccdc34;Ccdc34;Ccdc34;Ccdc34,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,2,68201,ENSMUSG00000027160,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23207,cg16481126,0.00000473,0.0000124,0.380686623,0.703696529,gain,ns,0.00000273,0.0000211,0.129304163,0.897200831,pos,ns,0.005712509,0.006179708,0.924397911,0.355998169,pos,ns,0.448552236,-0.0000941,0.00021252,-0.442914914,0.658136187,neg,ns,0.705344309,Rnf220,Rnf220_Intron,4,117488331,117488380,117488331,117488332,50,-,CGCTGGGTTTAGGCAGATGCCTTTTAGCGCAGGGAAGTTAACACAGTGCC,"Intron (Rnf220-201/Rnf220, intron 2 of 14)",4,117271463,117497052,225590,2,Rnf220-201,8672,Rnf220-201;Rnf220-207;Rnf220-204,Rnf220;Rnf220;Rnf220,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27041,cg03403280,0.00000291,0.0000032,0.91063926,0.363193002,gain,ns,0.000000702,0.00000543,0.129282483,0.897217971,pos,ns,-0.000437516,0.001590903,-0.275011117,0.783490896,neg,ns,0.105966046,-0.0000259,0.0000547,-0.473489557,0.63619721,neg,ns,0.91234898,Dlgap4,Dlgap4_threeUTR,2,156761950,156761999,156761998,156761999,50,+,GGGGAAGTCCAGGGACAAATTCCTGGTCGGCAATAACGCTGCCCACATCG,3' UTR,2,156613705,156764361,150657,1,Dlgap4-205,148245,Dlgap4-205;Dlgap4-212;Dlgap4-206;Dlgap4-202;Dlgap4-209;Dlgap4-204;Dlgap4-208;Dlgap4-213;Dlgap4-201;Dlgap4-203;Dlgap4-207,Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,17,228836,ENSMUSG00000061689,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18325,cg26885340,0.00000152,0.00000134,1.133194399,0.258008264,gain,ns,-0.000000294,0.00000228,-0.129244051,0.897248356,neg,ns,0.001125353,0.000667244,1.686568347,0.092692411,pos,ns,1.032955823,-0.0000413,0.0000229,-1.801629674,0.072575199,neg,ns,0.966959727,Kcnj6,Kcnj6_Exon,16,94762542,94762591,94762590,94762591,50,+,ATGGGGTGCTGGTCTCATAGGTCTCATGGAAGCTGTTGTAGTCAACTTCG,"Exon (Kcnj6-201/Kcnj6, exon 4 of 5)",16,94748636,94997655,249020,2,Kcnj6-201,235064,Kcnj6-201;Kcnj6-202;Kcnj6-207,Kcnj6;Kcnj6;Kcnj6,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,16522,ENSMUSG00000043301,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3885,cg21024270,-0.0000194,0.0000102,-1.906020076,0.057572297,loss,ns,0.00000224,0.0000173,0.129217321,0.897269488,pos,ns,0.000586665,0.005075515,0.115587225,0.908054524,pos,ns,0.041888073,-0.0000995,0.000174547,-0.570033886,0.569067594,neg,ns,0.83033985,5730522E02Rik,5730522E02Rik_Intron,11,25682647,25682696,25682647,25682648,50,-,CGAGTGAAATAAAATCTATAAGGCATTAAAATGACAGATTAGGCGAGAGC,"Intron (5730522E02Rik-202/5730522E02Rik, intron 2 of 5)",11,25617668,26210569,592902,2,5730522E02Rik-202,527873,5730522E02Rik-202;5730522E02Rik-201;5730522E02Rik-208,5730522E02Rik;5730522E02Rik;5730522E02Rik,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,90,70626,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12414,cg15474859,-0.00000214,0.00000143,-1.490935139,0.13699534,loss,ns,-0.000000314,0.00000243,-0.129092713,0.897368002,neg,ns,0.000749375,0.000712715,1.051436524,0.293877063,pos,ns,0.531834309,-0.0000483,0.0000245,-1.969716958,0.049760836,neg,ns,0.071501193,Klf7,Klf7_fiveUTR,1,64120965,64121014,64121013,64121014,50,+,GCTCCTGGAATATACTATAACTAGCCAACACGTCCATGCTGCTGCTGCCG,Promoter (<=1kb),1,64029447,64121491,92045,2,Klf7-202,477,Klf7-202;Klf7-201;Klf7-203,Klf7;Klf7;Klf7,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,21,93691,ENSMUSG00000025959,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
21240,cg18291784,-0.00000711,0.0000258,-0.27566443,0.78298948,loss,ns,0.00000565,0.0000438,0.128933104,0.897494191,pos,ns,0.012376267,0.012840772,0.963825798,0.335884508,pos,ns,0.473810026,-0.000691206,0.000441593,-1.565254559,0.118543435,neg,ns,0.847652684,Gm9599,Gm9599_Intergenic_upstream,12,106929354,106929403,106929402,106929403,50,-,CATTCAACCGCAAATTGATTTACTTTTGGGGAAACTCCTTGAGTTTCACG,Distal Intergenic,12,106886446,106886926,481,2,Gm9599-201,-42477,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,4,673604,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13821,cg05230847,-0.0000154,0.0000111,-1.390345871,0.165421257,loss,ns,-0.00000242,0.0000188,-0.128874839,0.897540257,neg,ns,-0.003690015,0.005504734,-0.670334843,0.503143418,neg,ns,0.298308204,-0.000130909,0.000189307,-0.691515669,0.489759084,neg,ns,0.274384194,Rpl31-ps2,Rpl31-ps2_Intergenic_upstream,13,73041844,73041893,73041844,73041845,50,+,CGTTTTCCTATCAAAGGGTTGTGCTCAGGAGAAATAAAACCTTTGTTCCC,Distal Intergenic,13,73233395,73233737,343,1,Rpl31-ps2-201,-191502,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,8,621486,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13147,cg17470778,-0.00000562,0.00000252,-2.23357182,0.026224425,loss,ns,0.000000551,0.00000427,0.128843724,0.897564858,pos,ns,-0.001573639,0.001252182,-1.256716926,0.209802265,neg,ns,0.678189828,0.0000573,0.0000431,1.330738935,0.184252899,pos,ns,0.937036323,Tcf4,Tcf4_Intron,18,69562875,69562924,69562875,69562876,50,+,CGGGTTAACCAGGGAACAGGGGCAGAGTCATAATTGGCCTATTTAGAGTA,"Intron (Tcf4-259/Tcf4, intron 6 of 6)",18,69343356,69564082,220727,1,Tcf4-259,219519,Tcf4-259;Tcf4-201;Tcf4-207;Tcf4-210;Tcf4-240;Tcf4-254;Tcf4-246;Tcf4-206;Tcf4-202;Tcf4-257;Tcf4-232;Tcf4-248;Tcf4-231;Tcf4-205;Tcf4-253;Tcf4-233;Tcf4-238;Tcf4-245;Tcf4-249;Tcf4-219;Tcf4-235;Tcf4-227;Tcf4-250;Tcf4-229;Tcf4-260;Tcf4-226;Tcf4-216;Tcf4-256;Tcf4-230;Tcf4-221;Tcf4-234;Tcf4-258;Tcf4-217;Tcf4-247;Tcf4-252;Tcf4-218;Tcf4-208;Tcf4-243;Tcf4-237;Tcf4-239;Tcf4-262;Tcf4-223;Tcf4-212,Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,42,66,21413,ENSMUSG00000053477,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10306,cg25410778,-0.00000193,0.00000111,-1.742355093,0.082438037,loss,ns,-0.000000242,0.00000188,-0.128827364,0.897577792,neg,ns,0.00024625,0.000551194,0.446758072,0.655361691,pos,ns,0.183518949,-0.0000101,0.000019,-0.530993159,0.595803736,neg,ns,0.965158597,Sepsecs,Sepsecs_Exon,5,52666033,52666082,52666081,52666082,50,-,TCAAAAGGCTAGAGCCTGCAGCTTTTGGTTGCACAGCAGAAATATCACCG,"Exon (Sepsecs-201/Sepsecs, exon 3 of 11)",5,52640087,52669708,29622,2,Sepsecs-201,3626,Sepsecs-201;Sepsecs-204;Sepsecs-203;Sepsecs-202,Sepsecs;Sepsecs;Sepsecs;Sepsecs,0;0;-33;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,211006,ENSMUSG00000029173,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25169,cg07687359,-0.0000318,0.00000909,-3.503399787,0.00052697,loss,ns,0.00000199,0.0000154,0.128802222,0.89759767,pos,ns,-0.008382724,0.00452266,-1.853494249,0.064761483,neg,ns,1.188683213,0.000138888,0.000155534,0.892973012,0.372564295,pos,ns,0.760600529,Plekha6,Plekha6_Exon,1,133294539,133294588,133294587,133294588,50,+,TTCTGTGTGTCTGTGCCTCTTCAGTATGCAGAACGTGGTGCCCATCGGCG,"Exon (Plekha6-204/Plekha6, exon 21 of 23)",1,133181321,133301219,119899,1,Plekha6-204,113218,Plekha6-204;Plekha6-202;Plekha6-201;Plekha6-203;Plekha6-207;Plekha6-210;Plekha6-208,Plekha6;Plekha6;Plekha6;Plekha6;Plekha6;Plekha6;Plekha6,0;0;0;0;0;2789;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,7,240753,ENSMUSG00000041757,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15182,cg15302534,0.0000105,0.00000488,2.161569576,0.031416523,gain,ns,0.00000107,0.00000828,0.128674554,0.89769861,pos,ns,-0.003603146,0.002426383,-1.484986437,0.138563558,neg,ns,0.858350975,0.0000656,0.0000834,0.786229972,0.432333344,pos,ns,0.782029541,Polg,Polg_Intron,7,79519028,79519077,79519076,79519077,50,-,CTTACAGGCCCTGATATAGTGTCTTTGTCAATGCTGCCACTATTGACGCG,"Intron (Mir9-3hg-205/Mir9-3hg-205, intron 1 of 1)",7,79446231,79466362,20132,2,Polg-201,-52715,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,16,18975,ENSMUSG00000039176,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
5245,cg14097115,-2.92E-08,0.00000166,-0.017565658,0.985996653,loss,ns,0.000000363,0.00000282,0.128626403,0.897736681,pos,ns,0.000902738,0.000826683,1.092000038,0.275681024,pos,ns,0.559593127,0.00000259,0.0000284,0.091159827,0.927424471,pos,ns,0.06918548,Atxn7l1,Atxn7l1_Exon,12,33147842,33147891,33147890,33147891,50,-,GCCCAGTCCGGAGGCGTTTCTGGGCAAACCCTGGTCCTCCTGGATCGACG,Promoter (<=1kb),12,33147693,33251146,103454,1,Atxn7l1-201,149,Atxn7l1-201;Atxn7l1-203;Atxn7l1-212;Atxn7l1-206;Atxn7l1-204;Atxn7l1-208,Atxn7l1;Atxn7l1;Atxn7l1;Atxn7l1;Atxn7l1;Atxn7l1,0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,24,380753,ENSMUSG00000020564,conserved gene and region,12,33147823,33147930,108,*,108,9,0.611111111,0.934615385,0.083333333,0.00000176,CpGisland,TRUE,U1,Pr-A
25540,cg14118069,-0.0000102,0.00000497,-2.052178169,0.040991867,loss,ns,0.00000108,0.00000844,0.128562434,0.897787258,pos,ns,0.000459324,0.00247222,0.185794125,0.852727722,pos,ns,0.069189618,-0.0000902,0.000085,-1.060539692,0.289724712,neg,ns,0.938243893,Ebf3,Ebf3_Intron,7,137203248,137203297,137203296,137203297,50,-,ACAGACTTCAAGTTAAATGGAAACTATTAAAGCTCAAATGATTTCTGCCG,"Intron (Ebf3-204/Ebf3, intron 11 of 15)",7,137193673,137314445,120773,2,Ebf3-204,111148,Ebf3-204;Ebf3-201;Ebf3-202;Ebf3-203;Ebf3-208;Ebf3-205,Ebf3;Ebf3;Ebf3;Ebf3;Ebf3;Ebf3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,62,84,13593,ENSMUSG00000010476,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13245,cg05347535,0.0000916,0.0000145,6.298953323,1.03E-09,gain,yes,-0.00000317,0.0000247,-0.128472869,0.897858074,neg,ns,0.035459137,0.007235637,4.900623976,0.00000154,pos,ns,5.811761291,-0.001104198,0.000248833,-4.437508027,0.0000127,neg,ns,0.295541481,Nlgn2,Nlgn2_Intron,11,69836094,69836143,69836094,69836095,50,-,CGCGGGTGGCTCTCTGCAGGTGTCAATTTATTCCAGAGATGAGGACACAG,"Intron (Nlgn2-202/Nlgn2, intron 1 of 7)",11,69823122,69837784,14663,2,Nlgn2-202,1641,Nlgn2-201;Nlgn2-202;Nlgn2-203;Tmem256-203;Tmem256-201;Tmem256-205;Tmem256-204;Tmem256-202,Nlgn2;Nlgn2;Nlgn2;Tmem256;Tmem256;Tmem256;Tmem256;Tmem256,0;0;0;-2371;-2381;-2412;-2420;-2495,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,17,216856,ENSMUSG00000051790,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
20338,cg16707529,0.0000896,0.00000639,14.01540314,6.60E-35,gain,yes,0.00000139,0.0000109,0.128395064,0.897919592,pos,ns,0.009065762,0.003181009,2.849964139,0.004665303,pos,ns,2.33112019,-0.000143122,0.000109395,-1.30830676,0.191738484,neg,ns,0.140055819,Hoxc5,Hoxc5_fiveUTR,15,103009599,103009648,103009647,103009648,50,+,CAAAGGGATGAATTCCTACTTCACTAACCCTTCCTTATCCTGCCACCTCG,5' UTR,15,102967443,103015676,48234,1,Hoxc5-202,42156,Hoxc5-202;Hoxc5-201;Hoxc6-202;Hoxc6-203;Hoxc6-201,Hoxc5;Hoxc5;Hoxc6;Hoxc6;Hoxc6,0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,13,134,15424,ENSMUSG00000022485,mapped to different genes,15,103009647,103009812,166,*,166,14,0.602409639,0.948184415,0.084337349,5.77E-10,CpGisland,TRUE,U13,Hc-P
21046,cg09122150,0.0000654,0.0000274,2.38918685,0.017483327,gain,ns,-0.00000597,0.0000465,-0.128279678,0.898010826,neg,ns,0.054159207,0.013627337,3.974306032,0.0000879,pos,ns,4.056207687,-0.001167377,0.000468643,-2.490973334,0.013262297,neg,ns,0.62351774,Glyctk,Glyctk_threeUTR,9,106154151,106154200,106154199,106154200,50,-,ATTCCTATGTGATTCTACTGCTCACTCATATAGGGATTGGAGCCGTGGCG,3' UTR,9,106152857,106158118,5262,2,Glyctk-201,3918,Glyctk-201;Glyctk-202;Glyctk-205;Glyctk-204;Glyctk-203,Glyctk;Glyctk;Glyctk;Glyctk;Glyctk,0;0;3050;3917;3910,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,6,235582,ENSMUSG00000020258,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15452,cg10659172,0.0000681,0.0000116,5.883049666,1.04E-08,gain,yes,-0.00000252,0.0000197,-0.127923338,0.898292586,neg,ns,0.025770757,0.005764681,4.470457181,0.000011,pos,ns,4.960146152,-0.000701924,0.000198247,-3.540657801,0.00046038,neg,ns,0.371587606,Srsf5,Srsf5_Exon,12,80948140,80948189,80948140,80948141,50,-,CGTTGGCCTTATGACGAGGAGTGCCTGTGGGTTATCCTAATCGTTGTCTT,"Exon (Srsf5-207/Srsf5, exon 5 of 7)",12,80945504,80950507,5004,1,Srsf5-201,2636,Slc10a1-202;Slc10a1-201;Srsf5-201;Srsf5-204;Srsf5-207;Srsf5-202;Srsf5-203;Srsf5-212;Srsf5-211;Srsf5-206;Srsf5-208;Srsf5-210;Srsf5-205;Srsf5-209,Slc10a1;Slc10a1;Srsf5;Srsf5;Srsf5;Srsf5;Srsf5;Srsf5;Srsf5;Srsf5;Srsf5;Srsf5;Srsf5;Srsf5,20516;19890;0;0;0;0;0;0;2606;0;2570;2561;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,10,20384,ENSMUSG00000021134,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19931,cg10798734,0.00000208,0.00000282,0.737989293,0.461079234,gain,ns,0.000000611,0.00000478,0.127822993,0.898371932,pos,ns,0.000904382,0.001401118,0.645471145,0.519099364,pos,ns,0.284749503,0.0000333,0.0000482,0.691457302,0.489795701,pos,ns,0.960733244,Ogt,Ogt_Exon,X,101655445,101655494,101655445,101655446,50,-,CGCATTAGTTTTGGCGCAAGCGAGCCTATGCTGCAGGGTCACTTTTGGCT,"Exon (Ogt-203/Ogt, exon 1 of 17)",20,101640060,101682940,42881,1,Ogt-202,15385,Ogt-202;Ogt-206;Ogt-201;Ogt-205;Ogt-204;Ogt-207;Ogt-203,Ogt;Ogt;Ogt;Ogt;Ogt;Ogt;Ogt,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,32,33,108155,ENSMUSG00000034160,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23518,cg20042833,-0.00000418,0.00000479,-0.871959726,0.38390517,loss,ns,0.00000104,0.00000814,0.127781228,0.898404957,pos,ns,0.002988128,0.002383839,1.253493671,0.210970635,pos,ns,0.675777991,-0.000071,0.000082,-0.865474917,0.387447455,neg,ns,0.932434825,Med13l,Med13l_Exon,5,118745772,118745821,118745820,118745821,50,+,CCGTGATGTTGCCTATATTGTGGTGTGTCCAGAAAATGAGGCCTTGCTCG,"Exon (Med13l-201/Med13l, exon 19 of 31)",5,118560719,118765438,204720,1,Med13l-201,185053,Med13l-201;Med13l-202;Med13l-205;Med13l-206,Med13l;Med13l;Med13l;Med13l,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,16,76199,ENSMUSG00000018076,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13878,cg17642235,-0.00000904,0.00000507,-1.784523338,0.075316511,loss,ns,0.0000011,0.00000861,0.12759187,0.898554692,pos,ns,-0.002370477,0.002521539,-0.940091341,0.347902645,neg,ns,0.458542269,0.00016537,0.0000867,1.907041829,0.057439344,pos,ns,0.920415154,Ptk2,Ptk2_Intron,15,73212003,73212052,73212003,73212004,50,-,CGAACGGAAGGTGAGGAAAAGTTAAAGGAATTTATCAGAGAAAGGGAAAA,"Intron (Ptk2-208/Ptk2, intron 30 of 33)",15,73205102,73423128,218027,2,Ptk2-208,211076,Ptk2-208;Ptk2-201;Ptk2-216;Ptk2-202;Ptk2-211;Ptk2-215;Ptk2-204;Ptk2-214,Ptk2;Ptk2;Ptk2;Ptk2;Ptk2;Ptk2;Ptk2;Ptk2,0;0;0;-2512;0;0;0;4188,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,5,14083,ENSMUSG00000022607,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1393,cg22472903,-0.0000313,0.00000675,-4.633792935,0.00000529,loss,ns,0.00000146,0.0000115,0.127581332,0.898563024,pos,ns,-0.005202078,0.003357113,-1.549569008,0.122265259,neg,ns,0.912696926,0.0000449,0.000115451,0.388580847,0.697852976,pos,ns,0.905764713,Rpl36-ps3,Rpl36-ps3_Intergenic_upstream,12,12655680,12655729,12655728,12655729,50,+,GAAATACCAGCATTTCCAAGGGGAAATCCAATCCGTTCAAATTGCCCCCG,Distal Intergenic,12,12912022,12912336,315,1,Rpl36-ps3-201,-256293,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,19,20,100043215,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8363,cg20093263,-0.0000405,0.00000603,-6.721352131,8.65E-11,loss,yes,0.0000013,0.0000102,0.127435904,0.898678024,pos,ns,-0.004127694,0.002999378,-1.376183213,0.16975821,neg,ns,0.770169213,-0.0000193,0.000103148,-0.187223773,0.851607662,neg,ns,0.90007749,Zeb2,Zeb2_Intron,2,45047843,45047892,45047843,45047844,50,+,CGTTCTGTTCCAATAACCTGAGAAAAGTTTATGGACATGCCTTGCTGCCT,"Intron (Zeb2-212/Zeb2, intron 3 of 10)",2,44983632,45117395,133764,2,Zeb2-212,69503,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-218;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10575,cg00654772,-0.00000694,0.00000308,-2.257186728,0.024692199,loss,ns,-0.000000666,0.00000523,-0.127418866,0.898691497,neg,ns,-0.002113062,0.001531129,-1.380068173,0.168560102,neg,ns,0.773245214,0.0000403,0.0000527,0.765597079,0.444498584,pos,ns,0.941716793,Gm7557,Gm7557_Exon,12,54512586,54512635,54512634,54512635,50,+,CAAATTAAATCTTCATTTATCTATATGCTCCAAATAGTACCTATCCATCG,"Exon (Gm10465-201/Gm10465-201, exon 2 of 2)",12,54429534,54430398,865,2,Gm7557-201,-82188,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,665256,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18347,cg24352905,0.0000529,0.00000365,14.47899934,1.20E-36,gain,yes,-0.00000079,0.00000621,-0.127296439,0.89878831,neg,ns,0.002519395,0.001818522,1.385407943,0.166923757,pos,ns,0.777481849,0.000154698,0.0000625,2.473625134,0.013910486,pos,ns,0.05866328,Otp,Otp_Promoter,13,94868966,94869015,94869014,94869015,50,+,GACCCCTTTACTCCGTGACGTGCAACCGCTCCATCTCATTAAGGAAATCG,Promoter (6-7kb),13,94875602,94885130,9529,1,Otp-201,-6587,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,27,34,18420,ENSMUSG00000021685,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
13436,cg02384111,-0.0000121,0.00000639,-1.887253737,0.060060289,loss,ns,-0.00000138,0.0000108,-0.127220941,0.898848013,neg,ns,0.014977901,0.003178113,4.712828724,0.0000037,pos,ns,5.432359283,-0.000686788,0.000109295,-6.283801824,1.12E-09,neg,yes,0.860857719,Pld2,Pld2_Exon,11,70551181,70551230,70551229,70551230,50,+,TTTGTGAATGGGGCAGGTTACTTTGCTGCTGTGGCAGATGCCATCCTTCG,"Exon (Pld2-201/Pld2, exon 11 of 25)",11,70540306,70558110,17805,1,Pld2-201,10875,Pld2-201;Pld2-203;Pld2-202;Pld2-207;Pld2-204;Pld2-205,Pld2;Pld2;Pld2;Pld2;Pld2;Pld2,0;0;10825;-2730;-4408;-4573,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,18806,ENSMUSG00000020828,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27846,cg18511247,-0.00000731,0.00000892,-0.81975434,0.412985982,loss,ns,-0.00000193,0.0000151,-0.127108141,0.898937215,neg,ns,-0.00601205,0.0044382,-1.354614438,0.176526866,neg,ns,0.753189189,0.000102687,0.000152629,0.672786276,0.501584464,pos,ns,0.900934931,Esrrg,Esrrg_threeUTR,1,188212282,188212331,188212282,188212283,50,-,CGGATGCAATTTATGTTGTGTGCCAGTCTGGTCCCAAACATCAATTTCTT,3' UTR,1,187609029,188214386,605358,1,Esrrg-203,603253,Esrrg-203;Esrrg-201;Esrrg-202,Esrrg;Esrrg;Esrrg,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,60,26381,ENSMUSG00000026610,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25765,cg01198287,0.0000955,0.0000097,9.851980613,4.23E-20,gain,yes,-0.00000209,0.0000165,-0.126939742,0.899070388,neg,ns,0.023008817,0.00482626,4.767422118,0.00000287,pos,ns,5.541446383,-0.00050714,0.000165975,-3.055526948,0.002441894,neg,ns,0.500632548,Uncx,Uncx_Promoter,5,139536999,139537048,139536999,139537000,50,+,CGACAGGCGGATGTGCTACTAAAACTCTTGGTTAGTTAATTAGTGTCTGA,Promoter (6-7kb),5,139543494,139548179,4686,1,Uncx-201,-6446,NA,NA,NA,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,22,88,22255,ENSMUSG00000029546,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
18187,cg18877719,-0.0000468,0.0000162,-2.897793562,0.004025744,loss,ns,-0.00000348,0.0000275,-0.126878615,0.899118729,neg,ns,-0.022237366,0.008045346,-2.764003834,0.006051308,neg,ns,2.218150745,0.000542928,0.000276679,1.962306022,0.050621129,pos,ns,0.68335663,Cacna1g,Cacna1g_Intron,11,94420613,94420662,94420613,94420614,50,+,CGATCCCATTATGCTAAAATATGAATGGAGAATTAACTAAAATGTTTGAA,"Intron (Cacna1g-202/Cacna1g, intron 26 of 35)",11,94408391,94474100,65710,2,Cacna1g-202,53438,Cacna1g-202;Cacna1g-203;Cacna1g-205;Cacna1g-206;Cacna1g-207;Cacna1g-208;Cacna1g-209;Cacna1g-210;Cacna1g-211;Cacna1g-201;Cacna1g-204;Cacna1g-215;Cacna1g-214;Cacna1g-212,Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g,0;0;0;0;0;0;0;0;0;0;0;0;0;5800,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,18,12291,ENSMUSG00000020866,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5322,cg10353262,0.000018,0.0000144,1.245566131,0.213864321,gain,ns,-0.00000311,0.0000245,-0.126827186,0.899159401,neg,ns,-0.018768171,0.007188574,-2.610833681,0.009471192,neg,ns,2.023595367,0.000547731,0.000247214,2.215612072,0.027444371,pos,ns,0.631909642,Zfp148,Zfp148_Exon,16,33434686,33434735,33434686,33434687,50,-,CGGCATAGACGAAATGCAGTCTTCCAGGACAATGGTTGTAATGGGTGGAG,"Exon (Zfp148-202/Zfp148, exon 4 of 9)",16,33380836,33504363,123528,1,Zfp148-202,53850,Zfp148-202;Zfp148-205;Zfp148-204;Zfp148-201,Zfp148;Zfp148;Zfp148;Zfp148,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,7,22661,ENSMUSG00000022811,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2748,cg01472737,0.000133176,0.0000118,11.26968807,6.40E-25,gain,yes,-0.00000254,0.0000201,-0.126711119,0.899251191,neg,ns,0.02278172,0.005881527,3.873436313,0.000130939,pos,ns,3.882931102,-0.000497106,0.000202265,-2.457694353,0.01453031,neg,ns,0.262452448,Klhl14,Klhl14_Exon,18,21654985,21655034,21655033,21655034,50,-,GCATTGCTAATTAGTCAATTTCTCTCTGCCTTCACAGGCTGGCGACTTCG,Promoter (<=1kb),18,21550379,21654718,104340,2,Klhl14-202,-316,Klhl14-201;Klhl14-202,Klhl14;Klhl14,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,38,225266,ENSMUSG00000042514,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
1647,cg09676524,0.00006,0.00000998,6.009838202,5.21E-09,gain,yes,0.00000215,0.000017,0.126588652,0.899348044,pos,ns,0.007786942,0.004965823,1.568107041,0.1178763,pos,ns,0.928573506,-0.000247464,0.000170774,-1.449073006,0.148327989,neg,ns,0.060918282,Zfp521,Zfp521_fiveUTR,18,13972655,13972704,13972703,13972704,50,+,CTGCCTGCACTCACACACAGACAGAGGGGCATGATTAAAAGGCGAGAGCG,Promoter (<=1kb),18,13687013,13972787,285775,2,Zfp521-201,83,Zfp521-201;Zfp521-204;Zfp521-203;Zfp521-202,Zfp521;Zfp521;Zfp521;Zfp521,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,81,225207,ENSMUSG00000024420,conserved gene but different region,18,13972697,13972999,303,*,303,56,0.808580858,1.154285714,0.184818482,2.05E-60,CpGisland,TRUE,U2,Pr-W
20498,cg01903435,-0.000017,0.0000135,-1.254874727,0.21046945,loss,ns,-0.00000291,0.000023,-0.12650687,0.899412723,neg,ns,-0.021995476,0.006734882,-3.265903536,0.001213364,neg,ns,2.916008763,0.000617965,0.000231612,2.668103812,0.008029201,pos,ns,0.708645193,Smug1,Smug1_Intron,15,103135777,103135826,103135777,103135778,50,+,CGGCGCGCAAAGCTATAAATAATGGCACAGATCATTAAACCCCGAGAGCA,"Intron (D930007P13Rik-201/D930007P13Rik-201, intron 3 of 6)",15,103153307,103158002,4696,2,Smug1-201,22176,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,12,71726,ENSMUSG00000036061,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
18369,cg21097283,0.0000335,0.00000606,5.53100058,6.77E-08,gain,yes,0.0000013,0.0000103,0.126459156,0.899450458,pos,ns,0.002192718,0.003017803,0.726594218,0.468022851,pos,ns,0.329732942,0.0000399,0.000103782,0.38424122,0.701063103,pos,ns,0.119635575,Otp,Otp_fiveUTR,13,94875634,94875683,94875682,94875683,50,+,CCACAAACCGAATTTTCTTTCATTTAGGTGATCTATATATATCTATATCG,Promoter (<=1kb),13,94875602,94885130,9529,1,Otp-201,32,Otp-201,Otp,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,34,18420,ENSMUSG00000021685,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
13257,cg26712987,-0.0000318,0.00000781,-4.067167528,0.0000604,loss,ns,-0.00000168,0.0000133,-0.126383262,0.899510481,neg,ns,0.008465139,0.003886365,2.17816356,0.030147198,pos,ns,1.520753049,-0.000414601,0.000133652,-3.102098271,0.00209836,neg,ns,0.698106614,Eif5a,Eif5a_Exon,11,69919178,69919227,69919178,69919179,50,-,CGAAGTAGACATCTCGACGATCTTACATGGCCGGCCTTTGAGCACCACAA,"Exon (Eif5a-213/Eif5a, exon 3 of 7)",11,69916714,69921085,4372,2,Eif5a-213,1858,Eif5a-213;Eif5a-207;Eif5a-208;Eif5a-209;Eif5a-201;Eif5a-202;Eif5a-210;Eif5a-203;Eif5a-206;Eif5a-205;Eif5a-204;Eif5a-212;Eif5a-211;Gps2-202;Gps2-203;Gps2-201;Gps2-204;Gps2-205,Eif5a;Eif5a;Eif5a;Eif5a;Eif5a;Eif5a;Eif5a;Eif5a;Eif5a;Eif5a;Eif5a;Eif5a;Eif5a;Gps2;Gps2;Gps2;Gps2;Gps2,0;0;0;0;0;0;0;0;0;0;0;-874;0;5290;5128;4986;4333;3137,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,5,276770,ENSMUSG00000078812,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1943,cg17092321,-0.00000236,0.00000223,-1.059809125,0.290056483,loss,ns,0.000000478,0.00000379,0.126382017,0.899511465,pos,ns,0.003395615,0.001109068,3.061683528,0.002393688,pos,ns,2.620932367,-0.000136102,0.0000381,-3.568425186,0.000415974,neg,ns,0.954500131,Arhgap35,Arhgap35_Exon,7,16564468,16564517,16564516,16564517,50,-,TGGAGGTTCTTTTTGCTTAAGGCAAAAGTATGTGCATCTCTAATGTACCG,"Exon (Arhgap35-201/Arhgap35, exon 2 of 7)",7,16493719,16614993,121275,2,Arhgap35-201,50476,Arhgap35-201;Arhgap35-202,Arhgap35;Arhgap35,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,5,232906,ENSMUSG00000058230,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22258,cg08305550,-0.0000609,0.00000903,-6.747522439,7.39E-11,loss,yes,0.00000194,0.0000153,0.126361933,0.89952735,pos,ns,-0.012092143,0.004493626,-2.690954146,0.007511287,neg,ns,2.124285659,0.000309181,0.000154535,2.000713481,0.046294986,pos,ns,0.88364857,Parva,Parva_Exon,7,112572906,112572955,112572954,112572955,50,+,AGAGGAAATAACTGGTAACACAGAGTATGTCAACACCATTGTTGCCAGCG,"Exon (Parva-203/Parva, exon 8 of 14)",7,112427505,112589629,162125,1,Parva-203,145401,Parva-203;Parva-201;Parva-202;Parva-204,Parva;Parva;Parva;Parva,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,6,57342,ENSMUSG00000030770,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15554,cg05109573,-0.0000218,0.00000726,-2.99584101,0.002957716,loss,ns,0.00000156,0.0000123,0.126316613,0.899563193,pos,ns,0.006697945,0.003615793,1.852413604,0.064916871,pos,ns,1.187642419,-0.000287281,0.000124347,-2.310320994,0.02152675,neg,ns,0.822476489,Zc3h7b,Zc3h7b_Exon,15,81780384,81780433,81780432,81780433,50,+,GTCCTGTTGCCTCTTTGCAGACATGATTAACAAGCAGGACTGTAAGTACG,"Exon (Zc3h7b-202/Zc3h7b, exon 13 of 15)",15,81745057,81784444,39388,1,Zc3h7b-202,35327,Zc3h7b-202;Zc3h7b-201;Zc3h7b-203;Zc3h7b-206;Zc3h7b-204,Zc3h7b;Zc3h7b;Zc3h7b;Zc3h7b;Zc3h7b,0;0;0;0;1717,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,5,20286,ENSMUSG00000022390,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12484,cg00849038,0.0000504,0.0000123,4.096926498,0.0000535,gain,ns,-0.00000264,0.0000209,-0.126286574,0.89958695,neg,ns,-0.016997857,0.006119086,-2.777842689,0.005805581,neg,ns,2.23615428,0.000770633,0.000210435,3.66209698,0.000294055,pos,ns,0.759445186,Hs3st3a1,Hs3st3a1_Intergenic_downstream,11,64549527,64549576,64549575,64549576,50,-,GCTGCTATTCATGGTCATCTGAAACAGCTTTTCCTCCCGGATGAAATTCG,Distal Intergenic,11,64435332,64522841,87510,1,Hs3st3a1-201,114244,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,2,15478,ENSMUSG00000047759,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24349,cg16034392,-0.0000437,0.0000126,-3.478309342,0.000576785,loss,ns,-0.00000269,0.0000213,-0.126172199,0.899677408,neg,ns,-0.020198408,0.006247543,-3.233016046,0.001356865,neg,ns,2.867463448,0.000299945,0.000214852,1.396049874,0.163698413,pos,ns,0.672508058,Ptpn6,Ptpn6_Intron,6,124730021,124730070,124730021,124730022,50,+,CGTGATGGAAAAAACACAAAACTCCTTCTGGGGAGAGAGTGAGAAGTGAG,"Intron (Ptpn6-202/Ptpn6, intron 3 of 15)",6,124720707,124733154,12448,2,Ptpn6-202,3084,Ptpn6-202;Ptpn6-201;Ptpn6-203;Ptpn6-210;Ptpn6-205;Ptpn6-211;Ptpn6-204;Ptpn6-207;Ptpn6-209;Ptpn6-206,Ptpn6;Ptpn6;Ptpn6;Ptpn6;Ptpn6;Ptpn6;Ptpn6;Ptpn6;Ptpn6;Ptpn6,0;0;0;0;-2560;-2610;-1313;0;3012;3040,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,15170,ENSMUSG00000004266,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
20059,cg07866391,-0.00000214,0.000000864,-2.473314816,0.013922332,loss,ns,-0.000000185,0.00000147,-0.126100931,0.899733774,neg,ns,0.000285623,0.000429851,0.664469829,0.506883603,pos,ns,0.295091757,-0.0000108,0.0000148,-0.731138178,0.465247023,neg,ns,0.026470779,Sp7,Sp7_Promoter,15,102376930,102376979,102376978,102376979,50,+,AGGAGGCAGCTGCATATCTGCGGTCCCGACCACAATTGCTGGGAGTCGCG,Promoter (9-10kb),15,102366902,102367182,281,2,Sp7-203,-9748,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,5,10,170574,ENSMUSG00000060284,conserved gene and region,15,102376804,102377083,280,*,280,32,0.757142857,0.816029144,0.114285714,1.19E-26,CpGisland,TRUE,NA,NRS
13231,cg23536305,-0.00000897,0.00000941,-0.953775062,0.340940622,loss,ns,0.00000201,0.000016,0.126025792,0.899793203,pos,ns,-0.007667618,0.004682358,-1.637555098,0.102529166,neg,ns,0.989152577,0.000120083,0.000161026,0.745738601,0.456390415,pos,ns,0.160363522,Aff2,Aff2_Intron,X,69818438,69818487,69818438,69818439,50,+,CGACCTGAATACCTCTGATTGCTTCTGTAAATAAGGTTAGAGAGCAAATG,"Intron (Aff2-201/Aff2, intron 8 of 19)",20,69360294,69868037,507744,1,Aff2-201,458144,Aff2-201,Aff2,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,5,14266,ENSMUSG00000031189,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1904,cg24967047,0.00000554,0.00000403,1.374186968,0.170376334,gain,ns,-0.000000863,0.00000685,-0.125971585,0.899836076,neg,ns,0.004309444,0.002007651,2.1465103,0.032608065,pos,ns,1.486674972,-0.000122727,0.000069,-1.777541556,0.076459494,neg,ns,0.926165303,Meis3,Meis3_Exon,7,16178981,16179030,16178981,16178982,50,-,CGCTACATCACCTGCCTCAAGGGAAAGATGCCCATCGACCTGGTCATCGA,"Exon (Meis3-205/Meis3, exon 6 of 13)",7,16175275,16186504,11230,1,Meis3-205,3706,Meis3-203;Meis3-208;Meis3-205;Meis3-202;Meis3-201;Meis3-207;Meis3-209;Meis3-204,Meis3;Meis3;Meis3;Meis3;Meis3;Meis3;Meis3;Meis3,3891;3842;0;0;0;0;1235;-12,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,Exon,3,3,17537,ENSMUSG00000041420,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27430,cg24837274,0.0000415,0.0000177,2.342885122,0.019767361,gain,ns,0.00000379,0.0000301,0.125926632,0.899871631,pos,ns,0.003762677,0.008818542,0.426677877,0.669910121,pos,ns,0.173983461,-0.000139902,0.000303269,-0.461311709,0.644898493,neg,ns,0.680852577,Pbx1,Pbx1_Intron,1,168094725,168094774,168094773,168094774,50,+,TCTCAGACTGGCACCTTTCACCATTGTTAAATTCACTTAAGATAAAAGCG,"Intron (Gm20711-201/Gm20711-201, intron 1 of 2)",1,168158370,168164662,6293,2,Pbx1-203,69888,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,84,18514,ENSMUSG00000052534,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19894,cg02972618,-0.0000496,0.0000137,-3.612234901,0.000354002,loss,ns,0.00000294,0.0000233,0.125925779,0.899872305,pos,ns,0.004903627,0.006830889,0.717860663,0.473383824,pos,ns,0.324786586,-0.0000243,0.000234914,-0.103372331,0.917734312,neg,ns,0.751653015,Gm43103,Gm43103_Intergenic_upstream,5,101523997,101524046,101523997,101523998,50,+,CGTGTATGTGTGTGTTAAACAATTTCATGGACATCTGTCATGCACAGTTA,Distal Intergenic,5,101505528,101506329,802,2,Gm43103-201,-17668,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,10,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24042,cg18117590,-0.00000949,0.00000712,-1.3320702,0.183815589,loss,ns,0.00000152,0.0000121,0.125913375,0.899882116,pos,ns,0.000148695,0.003544516,0.041950747,0.966564968,pos,ns,0.014768949,-0.000426071,0.000121896,-3.49537911,0.000542439,neg,ns,0.81916358,Clybl,Clybl_Intron,14,122233255,122233304,122233303,122233304,50,+,CACCCTGACCAGCGAGCCCAGATGGCGCTTAAATCTGTCACTCTTTAACG,"Intron (Clybl-201/Clybl, intron 1 of 7)",14,122181704,122402234,220531,1,Clybl-201,51551,Clybl-201,Clybl,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,13,69634,ENSMUSG00000025545,conserved gene and region,14,122233179,122233304,126,*,126,10,0.523809524,1.157024793,0.079365079,0.000000572,CpGisland,TRUE,NA,NRS
7514,cg00481760,0.0000491,0.0000112,4.376334509,0.0000165,gain,ns,0.0000024,0.0000191,0.125864551,0.899920733,pos,ns,-0.000668723,0.005585909,-0.119716123,0.904785574,neg,ns,0.043454332,0.000261779,0.000192099,1.362731944,0.173956111,pos,ns,0.473987143,Grik4,Grik4_Intron,9,42943219,42943268,42943219,42943220,50,-,CGCGTGGCATCACCAGACAACAGCACCAAGAGGAAGATGGCAGCATCAAG,"Intron (Grik4-202/Grik4, intron 1 of 20)",9,42518135,42944493,426359,2,Grik4-202,1225,Grik4-202,Grik4,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,8,110637,ENSMUSG00000032017,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
22244,cg07921189,-0.0000168,0.000004,-4.209054298,0.0000336,loss,ns,0.000000854,0.00000679,0.125716131,0.900038124,pos,ns,-0.000653967,0.001989959,-0.32863337,0.742654706,neg,ns,0.129213062,-0.0000446,0.0000684,-0.651954834,0.514913384,neg,ns,0.93037265,Lmcd1,Lmcd1_Exon,6,112328783,112328832,112328831,112328832,50,+,CTGGTGGACCTCATCTACTTCTGGAAGGATGGTGCACCCTGGTGCGGCCG,"Exon (Lmcd1-201/Lmcd1, exon 5 of 6)",6,112273758,112330425,56668,1,Lmcd1-201,55025,Lmcd1-201,Lmcd1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,30937,ENSMUSG00000057604,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18366,cg10485227,0.0000538,0.0000137,3.931182278,0.000104306,gain,ns,0.00000291,0.0000232,0.12546541,0.900236433,pos,ns,-0.002081317,0.006805188,-0.305842694,0.759929702,neg,ns,0.119226581,0.000545326,0.00023403,2.33015613,0.020439479,pos,ns,0.403282712,Otp,Otp_Promoter,13,94874633,94874682,94874681,94874682,50,-,AACTTTGTTGTTGGCTGGCTCTGAAAAATCAGAACATTAGAAATGGTTCG,Promoter (<=1kb),13,94875602,94885130,9529,1,Otp-201,-969,Otp-201,Otp,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,27,34,18420,ENSMUSG00000021685,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
13591,cg20983335,-0.00000558,0.00000132,-4.231475259,0.0000306,loss,ns,-0.000000281,0.00000224,-0.125460483,0.900240331,neg,ns,0.000200543,0.000655796,0.305800096,0.759962106,pos,ns,0.119208062,-0.0000219,0.0000226,-0.968888087,0.333356338,neg,ns,0.959907007,Rps18-ps1,Rps18-ps1_Intergenic_upstream,4,71484576,71484625,71484576,71484577,50,-,CGCAAGCCATTACTTGTTCTTGGTCAAATAGGCATTATAATGACTATTAC,Distal Intergenic,4,71370738,71371196,459,2,Rps18-ps1-201,-113429,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,5,100039979,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6407,cg25272488,-0.00000186,0.000002,-0.931108674,0.352521893,loss,ns,-0.000000426,0.00000339,-0.125451189,0.900247682,neg,ns,0.000757329,0.000994095,0.761827629,0.446742083,pos,ns,0.349943135,-0.0000542,0.0000342,-1.583983858,0.114216981,neg,ns,0.059952808,Pknox2,Pknox2_Exon,9,37147102,37147151,37147150,37147151,50,+,CCTGTCGCAATGAATAATACTCTGGCTTGGGGACTGGAATAAAACACACG,Promoter (<=1kb),9,36890982,37147407,256426,2,Pknox2-201,256,Pknox2-201;Pknox2-202;Pknox2-209;Pknox2-212;Pknox2-211;Pknox2-213;Pknox2-214,Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2,0;0;0;0;0;0;-1287,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,47,208076,ENSMUSG00000035934,conserved gene but different region,9,37147150,37147210,61,*,61,11,0.803278689,1.156896552,0.180327869,9.04E-12,CpGisland,TRUE,U3,Pr-B
7749,cg00973592,0.0000349,0.00000559,6.247264735,1.38E-09,gain,yes,-0.00000119,0.00000949,-0.125408697,0.900281292,neg,ns,-0.003689256,0.002780111,-1.327017405,0.185479497,neg,ns,0.731704091,0.000234718,0.0000956,2.455006419,0.014637269,pos,ns,0.870168374,Cd83,Cd83_Intergenic_downstream,13,44100734,44100783,44100734,44100735,50,-,CGCTCTGTGAAAAATCTCATTAATTCAGTCTGGCTCTTCAGATCAGCCGC,Distal Intergenic,13,43785185,43803128,17944,1,Cd83-202,315598,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,3,12522,ENSMUSG00000015396,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11148,cg13007617,0.000138874,0.0000151,9.225879617,4.50E-18,gain,yes,-0.0000032,0.0000256,-0.125255613,0.900402379,neg,ns,0.016140498,0.007491881,2.154398614,0.031979151,pos,ns,1.495133074,-0.000405114,0.000257645,-1.57237091,0.116884594,neg,ns,0.71765532,Gm45623,Gm45623_Promoter,13,56757203,56757252,56757203,56757204,50,+,CGGGCAGGAAATTAAACAAGGCTGGTACTGAGTAAATGCAGAGATGAAGT,Promoter (3-4kb),13,56752371,56753827,1457,2,Gm45623-201,-3376,Gm45623-201,Gm45623,-3376,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14088,cg02139507,0.0000225,0.00000787,2.865460264,0.004448624,gain,ns,-0.00000167,0.0000134,-0.125254592,0.900403187,neg,ns,-0.000537753,0.003914689,-0.137367982,0.890829113,neg,ns,0.050205598,0.000156558,0.000134626,1.162911796,0.24575969,pos,ns,0.112921679,Evx2,Evx2_threeUTR,2,74654291,74654340,74654339,74654340,50,-,GATTGGCAATTTTCGTCATAATCTGCACATTATTAGCATCAAACTTGACG,3' UTR,2,74652991,74659557,6567,2,Evx2-201,5217,Evx2-201;Evx2-202,Evx2;Evx2,0;5079,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,8,35,14029,ENSMUSG00000001815,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
25628,cg13171587,-0.00000814,0.00000395,-2.061115114,0.040125779,loss,ns,-0.00000084,0.00000671,-0.125128045,0.900503285,neg,ns,-0.004209431,0.001966231,-2.14086236,0.033064873,neg,ns,1.480633136,6.05E-08,0.0000676,0.000895061,0.99928642,pos,ns,0.871085085,Epo,Epo_Exon,5,137529113,137529162,137529113,137529114,50,+,CGGCCATCGGGGGCCAGGGACAGGGACATCACATCCCCACTGTGTCCAGC,"Exon (Gnb2-201/Gnb2, exon 8 of 10)",5,137483020,137533242,50223,2,Epo-202,4080,Epo-202;Gigyf1-201;Gnb2-201;Gnb2-213;Gnb2-209;Gnb2-203;Gnb2-204;Gnb2-202;Gnb2-212;Gnb2-214;Gnb2-215;Gnb2-208;Gnb2-205;Gnb2-210;Gnb2-211;Gnb2-206;Gnb2-207,Epo;Gigyf1;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2;Gnb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,9,13856,ENSMUSG00000029711,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17626,cg20001880,0.0000417,0.0000138,3.017484162,0.002760112,gain,ns,-0.00000293,0.0000235,-0.124923916,0.900664754,neg,ns,0.028462818,0.006874191,4.140533451,0.0000447,pos,ns,4.349549801,-0.000999846,0.000236403,-4.229414947,0.0000309,neg,ns,0.222507845,Olig1,Olig1_Intron,16,91301630,91301679,91301630,91301631,50,+,CGTTTTCTTTTGCTTAATTAAGTTGTTCAGTAGAAGGCTGGTCAAACAGT,"Intron (Gm15966-209/Gm15966-209, intron 1 of 2)",16,91269772,91271933,2162,1,Olig1-201,31858,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,9,50914,ENSMUSG00000046160,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22691,cg06018531,0.00000438,0.00000257,1.704962672,0.089203215,gain,ns,-0.000000545,0.00000436,-0.124873862,0.900704348,neg,ns,0.000585154,0.001278504,0.457686909,0.647498012,pos,ns,0.18876156,-0.0000292,0.000044,-0.663218515,0.507683476,neg,ns,0.063488804,Maf,Maf_fiveUTR,8,115706917,115706966,115706965,115706966,50,+,GAGGGGCCAGCGGGCTGTGCTGGGTGGCCAGCGGGTGAGCCAGCTTGCCG,Promoter (<=1kb),8,115682942,115707096,24155,2,Maf-201,130,Maf-201;Maf-202,Maf;Maf,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,23,17132,ENSMUSG00000055435,conserved gene and region,8,115706875,115707446,572,*,572,67,0.737762238,0.863600514,0.117132867,4.50E-56,CpGisland,TRUE,U1,Pr-A
4461,cg03227556,0.0000348,0.0000085,4.09922884,0.000053,gain,ns,0.0000018,0.0000144,0.124873038,0.900705,pos,ns,0.003049866,0.004228174,0.721319984,0.471256318,pos,ns,0.326742814,0.000275337,0.000145407,1.893569553,0.059213136,pos,ns,0.109632741,Sox4,Sox4_threeUTR,13,28950549,28950598,28950597,28950598,50,+,GATAACATGCTATATTAACCCCACCATTGAAATAATCCAACACCATCACG,3' UTR,13,28948919,28953713,4795,2,Sox4-201,3115,Sox4-201,Sox4,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,8,12,20677,ENSMUSG00000076431,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8328,cg04421688,-0.0000429,0.00000719,-5.957357822,6.95E-09,loss,yes,0.00000153,0.0000122,0.124808395,0.900756135,pos,ns,-0.001064578,0.003580162,-0.297354822,0.766394791,neg,ns,0.115547455,0.000158304,0.000123121,1.285758122,0.19948709,pos,ns,0.821884098,Zeb2,Zeb2_Intron,2,45024037,45024086,45024085,45024086,50,+,TAGAGTAATAAACACGGGGCATTAGCTCAGCTAGAGAAACACACCAGCCG,"Intron (Zeb2-212/Zeb2, intron 3 of 10)",2,44983632,45117395,133764,2,Zeb2-212,93309,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-227;Zeb2-216;Zeb2-229;Zeb2-218;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1141,cg07006187,0.0000986,0.0000116,8.488243846,8.81E-16,gain,yes,0.00000246,0.0000197,0.124777153,0.900780848,pos,ns,0.023943094,0.005783319,4.140026805,0.0000448,pos,ns,4.348641064,-0.000685067,0.000198888,-3.444487213,0.000650931,neg,ns,0.332965655,Rpl23a-ps13,Rpl23a-ps13_Intergenic_upstream,X,11798027,11798076,11798027,11798028,50,+,CGCCTGCTGGTGGCTTAAAAAACAATTGATGACTTTTAATCAGCTGAATG,Distal Intergenic,20,11867265,11867705,441,1,Rpl23a-ps13-201,-69189,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,13,14,628338,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
22868,cg00183899,-0.0000302,0.00000557,-5.423440951,0.000000118,loss,yes,0.00000118,0.00000946,0.124756773,0.90079697,pos,ns,-0.0000122,0.002771738,-0.004383996,0.996504909,neg,ns,0.001520558,-0.0000628,0.0000953,-0.65929202,0.510197713,neg,ns,0.901916916,Meis2,Meis2_Intron,2,116044131,116044180,116044131,116044132,50,-,CGTGGCTGGTTTATTGTTTATCTTTTGTTTATGAGGCAGTATTCAAGTTT,"Intron (Meis2-201/Meis2, intron 7 of 11)",2,115863064,116065047,201984,2,Meis2-201,20867,Meis2-201;Meis2-203;Meis2-205;Meis2-206;Meis2-204;Meis2-202;Meis2-216;Meis2-217;Meis2-213;Meis2-211;Meis2-210;Meis2-209;Meis2-212,Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2,0;0;0;0;0;0;0;0;0;0;0;0;14662,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,45,97,17536,ENSMUSG00000027210,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21559,cg15905994,-0.00000741,0.00000291,-2.541751101,0.011516574,loss,ns,0.000000618,0.00000495,0.124742182,0.900808512,pos,ns,0.000915564,0.00145066,0.631136302,0.528416465,pos,ns,0.277023658,-0.0000514,0.0000499,-1.029785763,0.303913365,neg,ns,0.96173378,Zfhx3,Zfhx3_Intron,8,108290924,108290973,108290924,108290925,50,+,CGAATTGACTAACTGGTTTCAGATCCAATACACATAACTTGATCAGACAC,"Intron (Zfhx3-204/Zfhx3, intron 2 of 15)",8,107942644,108961630,1018987,1,Zfhx3-204,348280,Zfhx3-204;Zfhx3-207,Zfhx3;Zfhx3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,114,177,11906,ENSMUSG00000038872,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12690,cg04706178,-0.0000493,0.0000104,-4.737402175,0.0000033,loss,ns,-0.0000022,0.0000177,-0.124575135,0.900940655,neg,ns,-0.005631531,0.005175985,-1.088011499,0.27743519,neg,ns,0.556838453,0.000156693,0.000178002,0.880288999,0.379384688,pos,ns,0.877479709,Unc80,Unc80_Exon,1,66683220,66683269,66683220,66683221,50,+,CGATTCTCCAGCCATGTCTCCAGCATGTCTGTACCTCAGGCTGAGGTGGG,"Exon (Unc80-201/Unc80, exon 60 of 65)",1,66468367,66699148,230782,1,Unc80-201,214853,Unc80-201;Unc80-206;Unc80-204,Unc80;Unc80;Unc80,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,9,329178,ENSMUSG00000055567,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2999,cg07866534,0.00000112,0.00000158,0.708994741,0.478860588,gain,ns,0.000000334,0.00000268,0.124478461,0.90101713,pos,ns,-0.001771602,0.000785345,-2.255824594,0.024778414,neg,ns,1.6059265,0.0000417,0.000027,1.543138301,0.123817392,pos,ns,0.969959964,Lrmda,Lrmda_Intron,14,22281518,22281567,22281518,22281519,50,-,CGTAATAGTTTGCAGTTATAGCTATAGTGAGAACAGCAGGCAAGACTATA,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,261806,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206,Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15082,cg01443426,0.0000019,0.00000126,1.51144814,0.131692996,gain,ns,-0.000000266,0.00000213,-0.124477041,0.901018254,neg,ns,0.001409643,0.00062548,2.253697852,0.024913547,pos,ns,1.603564439,-0.0000402,0.0000215,-1.870192297,0.062399383,neg,ns,0.029806542,H1f0,H1f0_Exon,15,79028764,79028813,79028764,79028765,50,-,CGGGCCAAGGCCTCCAAGAAGTCCACAGACCACCCCAAGTATTCAGACAT,Promoter (<=1kb),15,79028450,79030504,2055,1,H1f0-201,314,Gcat-201;Gcat-203;Gcat-202;H1f0-201,Gcat;Gcat;Gcat;H1f0,-2061;-2088;-4685;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,14958,ENSMUSG00000096210,conserved gene and region,15,79027893,79028861,969,*,969,104,0.720330237,0.830388926,0.107327141,2.76E-82,CpGisland,TRUE,U1,Pr-A
10620,cg25047480,-0.00000206,0.00000114,-1.814255482,0.070604983,loss,ns,-0.00000024,0.00000193,-0.124440707,0.901046996,neg,ns,0.000358241,0.00056552,0.633471055,0.526893151,pos,ns,0.278277447,-0.0000366,0.0000194,-1.882367868,0.060722546,neg,ns,0.017040351,1700123O20Rik,1700123O20Rik_fiveUTR,14,54686546,54686595,54686546,54686547,50,-,CGGTCACCCGCAGCGCCTGAAGAGGCTTCCCGTCCAGAGTCACCTCCTCC,Promoter (<=1kb),14,54686216,54690741,4526,1,1700123O20Rik-201,330,1700123O20Rik-201;1700123O20Rik-202;1700123O20Rik-204;1700123O20Rik-203;Acin1-201;Acin1-218;Acin1-203;Acin1-206;Acin1-212;Acin1-210,1700123O20Rik;1700123O20Rik;1700123O20Rik;1700123O20Rik;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1,0;0;0;-449;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,5,58248,ENSMUSG00000040822,mapped to different genes,14,54686230,54687055,826,*,826,78,0.633171913,0.949845201,0.094430993,3.48E-57,CpGisland,TRUE,U1,Pr-A
27339,cg03960643,-0.0000113,0.00000616,-1.832470988,0.067840378,loss,ns,0.0000013,0.0000105,0.124423363,0.901060716,pos,ns,-0.003121428,0.003067591,-1.017550117,0.309685282,neg,ns,0.509079434,0.000194748,0.000105494,1.846049343,0.065838284,pos,ns,0.724579442,Cdh22,Cdh22_Intron,2,165114857,165114906,165114857,165114858,50,+,CGTCACCTTTAGAGCACTGATGTGCACTTTCTTCGTTTGTGGGCAATTAG,"Intron (Cdh22-201/Cdh22, intron 11 of 11)",2,165111507,165234853,123347,2,Cdh22-201,119947,Cdh22-201;Cdh22-202,Cdh22;Cdh22,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,23,104010,ENSMUSG00000053166,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
22514,cg22217682,0.00000166,0.00000243,0.681674443,0.495953779,gain,ns,0.000000513,0.00000413,0.124311993,0.901148819,pos,ns,0.00091429,0.00120889,0.75630505,0.450040672,pos,ns,0.346748235,-0.0000923,0.0000416,-2.219888124,0.027149536,neg,ns,0.951083273,Gm13973,Gm13973_Intron,2,114899820,114899869,114899868,114899869,50,-,TAAGCGTGCTTAGCTGCTTGCCATTAAAATTGATCTGTACTATCCTTCCG,"Intron (Gm13974-201/Gm13974-201, intron 3 of 8)",2,115036419,115037312,894,2,Gm13973-201,137492,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,13,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25935,cg09122412,-0.0000164,0.0000107,-1.531045327,0.126777993,loss,ns,-0.00000226,0.0000182,-0.12425869,0.901190986,neg,ns,0.003092773,0.005334188,0.579802047,0.562469257,pos,ns,0.24990121,-0.00026418,0.000183442,-1.440126975,0.150840602,neg,ns,0.244960832,Col4a5,Col4a5_Exon,X,141475766,141475815,141475814,141475815,50,+,GCTTGTTCTTACTGGCCCTGAGTCTTTGGGGGCAGCCTGCAGAGGCTGCG,Promoter (<=1kb),20,141475385,141689234,213850,1,Col4a5-202,381,Col4a5-202;Col4a5-201;Col4a6-201,Col4a5;Col4a5;Col4a6,0;0;-1690,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,12830,ENSMUSG00000031274,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
9175,cg13082504,0.0000612,0.0000186,3.292825179,0.001106521,gain,ns,0.00000392,0.0000316,0.124182278,0.901251435,pos,ns,0.024847732,0.009249123,2.686496075,0.007609903,pos,ns,2.118620893,-0.000722964,0.000318077,-2.272923585,0.023714936,neg,ns,0.496446729,Cadm1,Cadm1_Intron,9,47367822,47367871,47367822,47367823,50,-,CGCAGCAGCTGTAACTTAAAAGACAGCCCCATTACTGCAAGCCTTATAAT,"Intron (Gm31816-201/Gm31816-201, intron 1 of 5)",9,47530173,47853385,323213,1,Cadm1-204,-162351,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,77,54725,ENSMUSG00000032076,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12798,cg17136488,0.0000071,0.00000666,1.066794967,0.286894528,gain,ns,-0.0000014,0.0000113,-0.123972949,0.901417037,neg,ns,-0.002111271,0.003313572,-0.637158597,0.524491803,neg,ns,0.280261295,-0.000135665,0.000113953,-1.190527774,0.234749869,neg,ns,0.656172083,Tmem33,Tmem33_Intergenic_upstream,5,67207313,67207362,67207313,67207314,50,+,CGTGGCTGTTAAATTTTGCCTGCTGGCTTCTGGCTGGAGGCCGGCCTGCC,Distal Intergenic,5,67260565,67291461,30897,1,Tmem33-201,-53203,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,22,22,67878,ENSMUSG00000037720,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4244,cg14302366,0.000000285,0.000000873,0.325928198,0.744698582,gain,ns,-0.000000184,0.00000148,-0.123854189,0.901510991,neg,ns,-0.000185469,0.000434653,-0.426705759,0.669889832,neg,ns,0.173996614,0.00000388,0.0000149,0.259411376,0.795490038,pos,ns,0.985979271,Erc2,Erc2_Exon,14,27876548,27876597,27876596,27876597,50,+,ATGAACCGTCAGGCTTATTTCTATCGTGTTCCTCCCCAGGAATTGCACCG,"Exon (Erc2-205/Erc2, exon 5 of 20)",14,27622428,28478535,856108,1,Erc2-205,254120,Erc2-205;Erc2-201;Erc2-203;Erc2-210;Erc2-211;Erc2-212;Erc2-202;Erc2-213;Erc2-208;Erc2-207,Erc2;Erc2;Erc2;Erc2;Erc2;Erc2;Erc2;Erc2;Erc2;Erc2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,17,238988,ENSMUSG00000040640,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26482,cg14988489,-0.000000195,0.00000405,-0.048136006,0.961638847,loss,ns,0.000000851,0.00000688,0.12358973,0.901720217,pos,ns,-0.00449769,0.002016671,-2.230254659,0.026446137,neg,ns,1.577637752,0.00014845,0.0000694,2.140496637,0.033094642,pos,ns,0.911801211,Casz1,Casz1_Intergenic_upstream,4,148753368,148753417,148753368,148753369,50,-,CGCCTCAGATGGCTTGTTAATTTCATCGTTTAGCCCGTTTATGGTGTTCC,Distal Intergenic,4,148804429,148954889,150461,1,Casz1-202,-51061,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,14,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4817,cg03012773,-0.0000128,0.00000456,-2.806214553,0.005329854,loss,ns,-0.000000956,0.00000775,-0.123388976,0.901879047,neg,ns,-0.000686227,0.002270975,-0.302172766,0.762722995,neg,ns,0.11763316,-0.0000799,0.0000781,-1.023698786,0.306775738,neg,ns,0.798594445,Dpysl5,Dpysl5_threeUTR,5,30797013,30797062,30797013,30797014,50,-,CGTGTAAATGGTTTTGTTTTGCACGTTTGGTTTGCGCAGTAGTTTGGTTT,3' UTR,5,30711564,30799375,87812,1,Dpysl5-203,85449,Dpysl5-203;Dpysl5-201;Dpysl5-207;Dpysl5-205;Dpysl5-206,Dpysl5;Dpysl5;Dpysl5;Dpysl5;Dpysl5,0;0;8823;5014;3293,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,2,65254,ENSMUSG00000029168,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22769,cg00017571,0.0000401,0.0000148,2.713487392,0.007030235,gain,ns,-0.0000031,0.0000251,-0.123381977,0.901884584,neg,ns,-0.012441984,0.007357552,-1.691049296,0.091832441,neg,ns,1.037003871,0.000542054,0.000253026,2.142289293,0.032948946,pos,ns,0.841577685,Dmbx1,Dmbx1_Intron,4,115932095,115932144,115932095,115932096,50,+,CGCCATATAGATGGCTTTAATTTTCCAAATCTGCAAATGCATCCGTTATG,"Intron (Dmbx1-203/Dmbx1, intron 1 of 4)",4,115915119,115939926,24808,2,Dmbx1-203,7782,Dmbx1-203;Dmbx1-202,Dmbx1;Dmbx1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,42,140477,ENSMUSG00000028707,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
15922,cg12284575,-0.0000178,0.0000141,-1.266930505,0.206131135,loss,ns,-0.00000295,0.0000239,-0.123345788,0.901913216,neg,ns,-0.00709093,0.007008315,-1.011788191,0.312428392,neg,ns,0.505249506,-0.000256221,0.000241015,-1.063089336,0.288568859,neg,ns,0.689694602,Gm5452,Gm5452_Intron,13,83880345,83880394,83880393,83880394,50,+,TGTCACTTAAGTGCTTGGAATCTGAACACAGAAAATGACAGGCAATGCCG,"Intron (C130071C03Rik-205/C130071C03Rik-205, intron 2 of 2)",13,83832340,83833336,997,1,Gm5452-201,48005,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,16,432789,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24262,cg22477063,-0.0000459,0.00000893,-5.145045441,0.000000475,loss,yes,0.00000187,0.0000152,0.123303699,0.901946516,pos,ns,-0.010076621,0.004444406,-2.267259501,0.024062723,neg,ns,1.618655234,-0.0000275,0.000152843,-0.17960125,0.857582959,neg,ns,0.880382024,Sbno1,Sbno1_threeUTR,5,124400751,124400800,124400799,124400800,50,+,AGAAGAACTTCCTCAATTTTGAAGGTCACTCCAGTAAAGCTCAGTTGTCG,3' UTR,5,124368702,124425914,57213,2,Sbno1-201,25114,Sbno1-201;Sbno1-216;Sbno1-202;Sbno1-217;Sbno1-212;Sbno1-204;Sbno1-205;Sbno1-203;Sbno1-214;Sbno1-218,Sbno1;Sbno1;Sbno1;Sbno1;Sbno1;Sbno1;Sbno1;Sbno1;Sbno1;Sbno1,0;0;0;0;-4494;0;-3629;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,2,243272,ENSMUSG00000038095,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3394,cg02650385,0.000000248,0.00000186,0.133475299,0.893904103,gain,ns,-0.000000389,0.00000315,-0.123292456,0.901955411,neg,ns,0.00052661,0.000923269,0.570375853,0.568835972,pos,ns,0.245012948,-0.0000196,0.0000318,-0.616418343,0.538070838,neg,ns,0.061500614,Bcl6,Bcl6_Promoter,16,23988935,23988984,23988935,23988936,50,+,CGCTGTAGCAAAGCTCGGCCTCTGGAATTCTGAGAACTAATTTGCTATTC,Promoter (<=1kb),16,23965052,23988852,23801,2,Bcl6-201,-83,Bcl6-201;Gm37419-201,Bcl6;Gm37419,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,7,18,12053,ENSMUSG00000022508,conserved gene but different region,16,23988657,23989142,486,*,486,53,0.639917696,1.065348664,0.109053498,1.22E-42,CpGisland,TRUE,U1,Pr-A
21435,cg09573108,-0.0000033,0.0000014,-2.352998344,0.019247265,loss,ns,0.000000294,0.00000238,0.123265118,0.901977041,pos,ns,0.000328526,0.000698655,0.470227112,0.638523407,pos,ns,0.194823178,0.00000695,0.000024,0.289361844,0.772497916,pos,ns,0.961524998,Rbm5,Rbm5_Exon,9,107757058,107757107,107757106,107757107,50,-,GAGCACACTTCGGAAAAATCAGTGCTCTGGAATTAAATGGACAACATACG,"Exon (Rbm5-219/Rbm5, exon 5 of 23)",9,107740371,107770996,30626,2,Rbm5-214,13889,Rbm5-214;Rbm5-219;Rbm5-224;Rbm5-210;Rbm5-201;Rbm5-211;Rbm5-217;Rbm5-212;Rbm5-221;Rbm5-220;Rbm5-223;Rbm5-208;Rbm5-203;Rbm5-204;Rbm5-218,Rbm5;Rbm5;Rbm5;Rbm5;Rbm5;Rbm5;Rbm5;Rbm5;Rbm5;Rbm5;Rbm5;Rbm5;Rbm5;Rbm5;Rbm5,0;0;0;0;0;0;-2968;-2456;0;0;0;0;0;13852;13838,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,11,83486,ENSMUSG00000032580,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10851,cg23145319,-0.00000388,0.00000173,-2.234434498,0.026167031,loss,ns,-0.000000363,0.00000295,-0.123223058,0.902010318,neg,ns,-0.000551824,0.000863267,-0.639227392,0.523147063,neg,ns,0.281376208,0.0000342,0.0000297,1.150964808,0.250633699,pos,ns,0.9550523,Tcf7l2,Tcf7l2_Intergenic_upstream,19,55627416,55627465,55627416,55627417,50,+,CGAGCTCTGGGTACTGTTGGAATATGAAATAGATTATTCATTACTCTCCT,Distal Intergenic,19,55741820,55933229,191410,1,Tcf7l2-213,-114355,Vti1a-202;Vti1a-201,Vti1a;Vti1a,0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,88,21416,ENSMUSG00000024985,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6126,cg18954922,0.0000323,0.0000102,3.179158614,0.001626244,gain,ns,-0.00000212,0.0000173,-0.122935873,0.90223754,neg,ns,0.009561661,0.005058147,1.890348623,0.059643912,pos,ns,1.224433878,-0.000360842,0.000173949,-2.074412203,0.038866036,neg,ns,0.495426037,Tenm2,Tenm2_Exon,11,36106788,36106837,36106836,36106837,50,+,CGGTCTGGCAGACACACTGCCAGCTGTTCTGACCCAGTGTGCATCTCCCG,"Exon (Tenm2-202/Tenm2, exon 15 of 31)",11,36006656,37235882,1229227,2,Tenm2-202,1129045,Tenm2-202;Tenm2-208;Tenm2-201,Tenm2;Tenm2;Tenm2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,21,84,23964,ENSMUSG00000049336,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6217,cg16705480,0.00000782,0.00000353,2.219160751,0.027199494,gain,ns,0.000000735,0.00000599,0.122779514,0.902361256,pos,ns,-0.000613013,0.001754559,-0.349382779,0.727039173,neg,ns,0.138442189,0.0000154,0.0000603,0.254472659,0.799299143,pos,ns,0.936070723,Tenm2,Tenm2_Intron,11,36350570,36350619,36350618,36350619,50,-,AGTTTTTCCTTTTTTTAAAAAACACTAATTATGCTTAATGTTCCCTGTCG,"Intron (Tenm2-202/Tenm2, intron 5 of 30)",11,36006656,37235882,1229227,2,Tenm2-202,885263,Tenm2-202;Tenm2-208;Tenm2-201;Tenm2-204;Tenm2-205;Tenm2-206,Tenm2;Tenm2;Tenm2;Tenm2;Tenm2;Tenm2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,47,84,23964,ENSMUSG00000049336,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11550,cg22402892,-0.00000613,0.00000429,-1.429006752,0.154009152,loss,ns,0.000000893,0.00000729,0.122606203,0.902498388,pos,ns,-0.001216271,0.002135,-0.569682023,0.569305967,neg,ns,0.244654264,0.0000117,0.0000734,0.158827839,0.873907935,pos,ns,0.041747374,Vax1,Vax1_Promoter,19,59170453,59170502,59170453,59170454,50,+,CGCAGCCCCCACGTTTCGGTTACCTCATGAATACACTAAATTGTTTGGAT,Promoter (<=1kb),19,59166187,59170056,3870,2,Vax1-201,-397,Vax1-201;Vax1-202,Vax1;Vax1,0;-3473,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,12,18,22326,ENSMUSG00000006270,conserved gene and region,19,59170133,59170516,384,*,384,41,0.619791667,1.113043478,0.106770833,1.08E-32,CpGisland,TRUE,NA,NRS
12392,cg02238028,-0.00000257,0.00000909,-0.282874076,0.777462158,loss,ns,-0.00000189,0.0000155,-0.122594714,0.902507479,neg,ns,0.02425172,0.004526621,5.35757684,0.000000165,pos,ns,6.783082806,-0.000654725,0.00015567,-4.205848256,0.0000341,neg,ns,0.492872999,Fign,Fign_Intron,2,64095255,64095304,64095303,64095304,50,+,ATACGGTGAACAGTCAAACCATCCAATTTCTGCTCTCAGCACATTGTCCG,"Intron (Fign-203/Fign, intron 2 of 2)",2,63971507,64098012,126506,2,Fign-203,2708,Fign-203;Fign-201;Fign-202;Fign-204,Fign;Fign;Fign;Fign,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,84,60344,ENSMUSG00000075324,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25955,cg09699229,-0.0000407,0.00000907,-4.491634751,0.00000999,loss,ns,-0.00000189,0.0000154,-0.122545331,0.902546553,neg,ns,-0.008379409,0.004512163,-1.857071388,0.064249317,neg,ns,1.192131482,0.000033,0.000155173,0.212353982,0.831970444,pos,ns,0.862461275,Slco1c1,Slco1c1_threeUTR,6,141559718,141559767,141559766,141559767,50,+,TATATTGTTATATTTCTTTTCAGAACCAAACCTGTCTCTTATCATGAACG,3' UTR,6,141524368,141569704,45337,1,Slco1c1-205,35350,Slco1c1-205;Slco1c1-202;Slco1c1-201;Slco1c1-206;Slco1c1-203,Slco1c1;Slco1c1;Slco1c1;Slco1c1;Slco1c1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,2,58807,ENSMUSG00000030235,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1392,cg16873794,-0.00000118,0.00000303,-0.387590369,0.698585181,loss,ns,-0.000000632,0.00000515,-0.122514561,0.9025709,neg,ns,0.000375074,0.001510153,0.248367934,0.80401419,pos,ns,0.094736286,0.0000425,0.0000519,0.817713512,0.414148836,pos,ns,0.933506396,Rpl36-ps3,Rpl36-ps3_Intergenic_upstream,12,12655665,12655714,12655713,12655714,50,+,ACTTTTCAAATCATGGAAATACCAGCATTTCCAAGGGGAAATCCAATCCG,Distal Intergenic,12,12912022,12912336,315,1,Rpl36-ps3-201,-256308,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,19,20,100043215,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14307,cg00827935,-0.00000899,0.00000537,-1.674987462,0.094945095,loss,ns,0.00000112,0.00000912,0.122310559,0.902732321,pos,ns,-0.000528935,0.002672202,-0.197939756,0.843221933,neg,ns,0.074058106,-0.0000751,0.0000919,-0.817331462,0.414366742,neg,ns,0.865652665,Retreg2,Retreg2_Exon,1,75144322,75144371,75144322,75144323,50,-,CGCCCGGCCGCACCTGCTGAGTGTGCCCGAGTTGTGCAGATACCTGGCTG,"Exon (Retreg2-201/Retreg2, exon 4 of 9)",1,75142778,75147909,5132,1,Retreg2-204,1544,Cnppd1-202;Cnppd1-208;Cnppd1-201;Cnppd1-206;Cnppd1-207;Retreg2-204;Retreg2-201;Retreg2-208;Retreg2-207;Retreg2-202;Retreg2-203;Retreg2-205;Retreg2-206,Cnppd1;Cnppd1;Cnppd1;Cnppd1;Cnppd1;Retreg2;Retreg2;Retreg2;Retreg2;Retreg2;Retreg2;Retreg2;Retreg2,0;0;0;-2519;-1611;0;0;0;0;0;0;944;-933,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,Exon,3,3,227298,ENSMUSG00000049339,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U4,Pr-F
23074,cg13589011,-0.00000157,0.0000019,-0.823948652,0.410602195,loss,ns,-0.000000395,0.00000323,-0.122211663,0.902810576,neg,ns,-0.001644577,0.000946448,-1.737631006,0.083268955,neg,ns,1.079516888,-0.0000053,0.0000325,-0.162853726,0.870739713,neg,ns,0.95623419,Rnf220,Rnf220_Exon,4,117277569,117277618,117277617,117277618,50,+,GGGCAGGACTTACCATCACTGGCCCATTTAGAGAACTCAGGTGTGATGCG,"Exon (Rnf220-201/Rnf220, exon 11 of 15)",4,117271463,117497052,225590,2,Rnf220-201,219434,Rnf220-201;Rnf220-203;Rnf220-212;Rnf220-202;Rnf220-205;Rnf220-214;Rnf220-211;Rnf220-209;Rnf220-213,Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,15,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7655,cg04048321,-0.0000432,0.0000129,-3.338329042,0.000945581,loss,ns,0.00000268,0.000022,0.122169962,0.902843574,pos,ns,0.007180352,0.006438216,1.115270538,0.265598325,pos,ns,0.575774667,-0.000105223,0.00022141,-0.475243379,0.634948181,neg,ns,0.406809809,Zbtb20,Zbtb20_fiveUTR,16,43577641,43577690,43577641,43577642,50,-,CGGGCCTTCCCTGCCTGAACTTTGAAGCTGTTTTGTCTCCAGACCCAGCC,5' UTR,16,42907645,43577725,670081,1,Zbtb20-217,669996,Zbtb20-217;Zbtb20-204;Zbtb20-215;Zbtb20-201;Zbtb20-203;Zbtb20-213;Zbtb20-219;Zbtb20-216;Zbtb20-208;Zbtb20-220;Zbtb20-206;Zbtb20-202;Zbtb20-205,Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,8,98,56490,ENSMUSG00000022708,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24439,cg22891175,0.0000293,0.00000881,3.324767441,0.000991108,gain,ns,0.00000183,0.000015,0.121995151,0.902981903,pos,ns,0.015474892,0.004384297,3.529617403,0.00047924,pos,ns,3.319446684,-0.000553039,0.000150776,-3.667959731,0.000287671,neg,ns,0.130481479,Ntf3,Ntf3_Intron,6,126159859,126159908,126159907,126159908,50,-,AGACCCATCAGCAGTGACCTCTTCCAATCAACTTAATTGGCCCAATCTCG,"Intron (Ntf3-203/Ntf3, intron 1 of 1)",6,126101412,126164960,63549,2,Ntf3-203,5052,Ntf3-203;Ntf3-202;Ntf3-201,Ntf3;Ntf3;Ntf3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,5,18205,ENSMUSG00000049107,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19857,cg19565468,0.0000175,0.0000133,1.317436101,0.188665352,gain,ns,-0.00000275,0.0000225,-0.121937911,0.903027197,neg,ns,-0.012690229,0.006597213,-1.923574222,0.055323536,neg,ns,1.257090073,0.000193278,0.000226878,0.851902827,0.394925657,pos,ns,0.245571779,Cycs-ps2,Cycs-ps2_Intergenic_downstream,5,101323361,101323410,101323361,101323362,50,+,CGATGAATTGGTTAGTACAGGCATGTTTATAGACTGCCTCGGGAACCTCG,Distal Intergenic,5,101305578,101305869,292,1,Cycs-ps2-201,17783,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,10,13065,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6015,cg03809296,0.00000149,0.00000396,0.375463807,0.707572334,gain,ns,-0.00000082,0.00000672,-0.121918336,0.903042687,neg,ns,-0.003977949,0.001969627,-2.019645468,0.044280289,neg,ns,1.353789549,0.0000883,0.0000677,1.302901696,0.193575295,pos,ns,0.904530154,Cxxc5,Cxxc5_Intron,18,35855652,35855701,35855652,35855653,50,-,CGCTGGCTCCGCATTGCTGATGAAACGGAGCCCTTTGTTGTCCCTCCTCA,"Intron (Gm50371-201/Gm50371-201, intron 4 of 4)",18,35829397,35859002,29606,1,Cxxc5-202,26255,Cxxc5-202;Cxxc5-201;Cxxc5-206;Cxxc5-203;Cxxc5-204;Cxxc5-205,Cxxc5;Cxxc5;Cxxc5;Cxxc5;Cxxc5;Cxxc5,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,49,67393,ENSMUSG00000046668,conserved gene and region,18,35855560,35855824,265,*,265,22,0.671698113,0.73685541,0.083018868,2.89E-15,CpGisland,TRUE,U8,En-Pd
13796,cg23324048,0.0000292,0.00000551,5.28856906,0.000000233,gain,yes,0.00000114,0.00000937,0.121762005,0.903166396,pos,ns,0.002306629,0.002743958,0.840621251,0.401208051,pos,ns,0.396630361,0.000140708,0.0000944,1.491107397,0.136950135,pos,ns,0.107496809,Ppm1a,Ppm1a_Intergenic_downstream,12,72831986,72832035,72832034,72832035,50,-,TGGTGTTACTAAACATAACAGATGGCAGCTGTCTGCGGCTATATAGGGCG,Distal Intergenic,12,72791125,72793010,1886,1,Ppm1a-206,40910,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,19042,ENSMUSG00000021096,mapped to different genes,12,72832034,72832216,183,*,183,23,0.732240437,0.947972973,0.12568306,2.62E-20,CpGisland,TRUE,U3,Pr-B
7282,cg16350775,-0.00000151,0.00000215,-0.702124936,0.483128083,loss,ns,-0.000000444,0.00000365,-0.121576517,0.903313181,neg,ns,0.000445797,0.001069619,0.416781407,0.677126749,pos,ns,0.16933003,-0.0000184,0.0000368,-0.500468175,0.617100569,neg,ns,0.949700343,Gm5267,Gm5267_Intergenic_upstream,1,41982040,41982089,41982040,41982041,50,+,CGGGCAGAACAGGTGTTTGAATTAAGAAATACTAATATGTTTAGCAGCAC,Distal Intergenic,1,42103289,42104333,1045,1,Gm5267-201,-121200,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,15,383634,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3754,cg09552879,-0.000007,0.00000632,-1.107879802,0.268772569,loss,ns,-0.0000013,0.0000107,-0.121548414,0.90333542,neg,ns,0.001499053,0.003144328,0.476748315,0.633877236,pos,ns,0.197994845,-0.0000144,0.000108133,-0.133393249,0.893968935,neg,ns,0.942167729,5730522E02Rik,5730522E02Rik_Intron,11,25287551,25287600,25287599,25287600,50,+,ATATCTTTCATTTCCAGTTGCTATCTGCTGACTGTGGGATGTCATGTACG,"Intron (4933427E13Rik-204/4933427E13Rik-204, intron 1 of 1)",11,25602816,25620098,17283,2,5730522E02Rik-205,332498,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,90,70626,NA,mapped to different genes,11,25287599,25287683,85,*,85,8,0.505882353,1.574074074,0.094117647,0.00000348,CpGisland,TRUE,U15,NS
591,cg08476599,0.000230411,0.000013,17.68225653,7.18E-49,gain,yes,-0.00000269,0.0000221,-0.121455844,0.903408676,neg,ns,0.014362205,0.006485479,2.214517207,0.027520307,pos,ns,1.560346721,-0.0000283,0.000223035,-0.126884137,0.899114362,neg,ns,0.463178488,Macrod1,Macrod1_Intron,19,7143780,7143829,7143780,7143781,50,+,CGCGTGATCGCCAGATTACTCCAAATGCATTTATTACAGGGGTTAGAAGC,"Intron (Macrod1-201/Macrod1, intron 3 of 10)",19,7056810,7198057,141248,1,Macrod1-201,86970,Macrod1-201,Macrod1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,11,107227,ENSMUSG00000036278,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5580,cg18858291,0.00000019,0.00000226,0.083843398,0.933235059,gain,ns,-0.000000466,0.00000384,-0.121454505,0.903409736,neg,ns,0.001907128,0.001124974,1.695264166,0.091029427,pos,ns,1.040818191,-0.0000949,0.0000387,-2.452153606,0.014751552,neg,ns,0.948948879,4931406P16Rik,4931406P16Rik_fiveUTR,7,34285153,34285202,34285153,34285154,50,+,CGCTTGTAGTCCATTTTACTGTCCTGGGCACTGCAGCAATACATGCGGGA,5' UTR,7,34236707,34313551,76845,2,4931406P16Rik-202,28349,4931406P16Rik-202;4931406P16Rik-201;4931406P16Rik-210;4931406P16Rik-208;4931406P16Rik-203;4931406P16Rik-204,4931406P16Rik;4931406P16Rik;4931406P16Rik;4931406P16Rik;4931406P16Rik;4931406P16Rik,0;0;0;0;28343;20310,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,8,233103,ENSMUSG00000066571,conserved gene and region,7,34285022,34285154,133,*,133,9,0.69924812,0.561444653,0.067669173,0.00000959,CpGisland,TRUE,U10,Tr-S
23360,cg16283554,-0.00000228,0.00000194,-1.172582719,0.241863453,loss,ns,-0.0000004,0.0000033,-0.121316474,0.903518969,neg,ns,-0.00040668,0.000966328,-0.420850829,0.674155622,neg,ns,0.171239839,0.0000107,0.0000332,0.322041787,0.747638096,pos,ns,0.938383947,Kdm4a,Kdm4a_Exon,4,118164908,118164957,118164908,118164909,50,-,CGGAGAAATGCCTCACAGCTTTGAGCACTTCCTGGGAAAAAGCCTATTTA,"Exon (Kdm4a-204/Kdm4a, exon 7 of 22)",4,118136957,118180043,43087,2,Kdm4a-204,15086,Kdm4a-204;Kdm4a-202;Kdm4a-203;Kdm4a-201;Kdm4a-206,Kdm4a;Kdm4a;Kdm4a;Kdm4a;Kdm4a,0;0;0;0;-3251,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,230674,ENSMUSG00000033326,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23925,cg20272159,0.00000225,0.00000492,0.458103726,0.647198872,gain,ns,0.00000101,0.00000835,0.12128922,0.903540538,pos,ns,0.005740931,0.002447302,2.345820272,0.019615159,pos,ns,1.707408168,-0.000188617,0.0000842,-2.241110173,0.025726572,neg,ns,0.915591274,Rlf,Rlf_Exon,4,121149767,121149816,121149815,121149816,50,+,CCCAAGTCACTGAAAACAATATTACAGCCATTTAATTCACATTTGTAACG,"Exon (Rlf-203/Rlf, exon 6 of 6)",4,121145373,121188534,43162,2,Rlf-203,38718,Rlf-203;Rlf-201,Rlf;Rlf,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,109263,ENSMUSG00000049878,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7048,cg03112636,0.00000459,0.0000183,0.250979948,0.801995886,gain,ns,-0.00000376,0.0000311,-0.121057567,0.903723866,neg,ns,0.055555245,0.009108799,6.099074796,3.17E-09,pos,ns,8.498526127,-0.001618665,0.000313251,-5.167312928,0.000000426,neg,yes,0.343698922,Tfap2a,Tfap2a_Exon,13,40719190,40719239,40719238,40719239,50,+,ACTTTGTAGCCAGGAGCATGTTTTTTCTTGTCACTTGCTCATTGGGATCG,"Exon (Tfap2a-201/Tfap2a, exon 6 of 7)",13,40715302,40730443,15142,2,Tfap2a-201,11204,Tfap2a-201;Tfap2a-202;Tfap2a-205;Tfap2a-203;Tfap2a-209;Tfap2a-208;Tfap2a-206;Tfap2a-204,Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,13,57,21418,ENSMUSG00000021359,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
14179,cg24774179,0.0000417,0.00000472,8.835686329,7.57E-17,gain,yes,0.000000971,0.00000802,0.121043629,0.903734896,pos,ns,0.007174377,0.002350443,3.052351569,0.002467105,pos,ns,2.607812344,-0.000191402,0.0000808,-2.367915704,0.018502046,neg,ns,0.060235313,Hoxd3,Hoxd3_fiveUTR,2,74732865,74732914,74732913,74732914,50,-,ACCACGTGATTGGCGAAATAATTAATTCAGCACGTCCCTTAAGAAACACG,Promoter (<=1kb),2,74732913,74744214,11302,1,Hoxd3-205,0,Gm28230-201;Hoxd3-203;Hoxd3-205;Hoxd3-202;Hoxd4-203;Hoxd4-201;Hoxd4-202,Gm28230;Hoxd3;Hoxd3;Hoxd3;Hoxd4;Hoxd4;Hoxd4,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,8,24,15434,ENSMUSG00000079277,conserved gene but different region,2,74732626,74733055,430,*,430,35,0.590697674,0.938923202,0.081395349,1.14E-23,CpGisland,TRUE,U13,Hc-P
1511,cg10784341,0.0000412,0.00000869,4.744554199,0.00000319,gain,ns,0.00000178,0.0000148,0.120861719,0.903878862,pos,ns,0.002249021,0.004325665,0.519924985,0.603486927,pos,ns,0.219332133,0.0000511,0.000148759,0.343608442,0.731373702,pos,ns,0.10486237,Phactr2,Phactr2_fiveUTR,10,13388852,13388901,13388852,13388853,50,-,CGCCAGGAAATTTATATCTCCAAGGATGACAAACAGCCATTAGCTCCATT,5' UTR,10,13207717,13474412,266696,2,Phactr2-203,85511,Phactr2-203;Phactr2-204;Phactr2-201;Phactr2-205,Phactr2;Phactr2;Phactr2;Phactr2,0;0;0;-121,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,5,215789,ENSMUSG00000062866,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
1123,cg04388093,-0.0000167,0.00000373,-4.470440778,0.000011,loss,ns,0.000000766,0.00000634,0.120738492,0.903976387,pos,ns,-0.001461882,0.001857459,-0.787033451,0.431863561,neg,ns,0.364653438,0.0000927,0.0000639,1.450666364,0.147883863,pos,ns,0.932031929,Ikzf1,Ikzf1_Intron,11,11699709,11699758,11699709,11699710,50,+,CGTGTCACCAAGCTGACTCAAGGTTCATCGATGCATGCTCAGTAAATTAG,"Intron (Ikzf1-206/Ikzf1, intron 1 of 2)",11,11685003,11707800,22798,1,Ikzf1-206,14706,Ikzf1-206;Ikzf1-205;Ikzf1-203;Ikzf1-204;Ikzf1-202;Ikzf1-201,Ikzf1;Ikzf1;Ikzf1;Ikzf1;Ikzf1;Ikzf1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,15,22778,ENSMUSG00000018654,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27769,cg03830199,0.00000871,0.00000186,4.681073599,0.00000427,gain,ns,0.000000382,0.00000316,0.12073129,0.903982087,pos,ns,0.003098044,0.000926246,3.344731254,0.000924772,pos,ns,3.033965543,-0.0000697,0.0000319,-2.187403084,0.029459819,neg,ns,0.050960001,Tgfb2,Tgfb2_Exon,1,186704603,186704652,186704651,186704652,50,-,GATAGTCTTCTGGGGGACTGGTGAGCTTCAGCTTGCTCAGGATCTGCCCG,"Exon (Tgfb2-201/Tgfb2, exon 1 of 7)",1,186622792,186705989,83198,2,Tgfb2-201,1337,Tgfb2-201;Tgfb2-206;Tgfb2-203,Tgfb2;Tgfb2;Tgfb2,0;0;-270,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,4,21808,ENSMUSG00000039239,conserved gene and region,1,186704580,186704728,149,*,149,11,0.630872483,0.745,0.073825503,0.000000261,CpGisland,TRUE,U3,Pr-B
10629,cg15468631,0.0000103,0.0000023,4.473204165,0.0000108,gain,ns,0.000000471,0.0000039,0.120697109,0.90400914,pos,ns,0.001943635,0.001143834,1.699229113,0.090279216,pos,ns,1.04441222,-0.0000116,0.0000393,-0.296117252,0.767338809,neg,ns,0.051449931,Dnaja4,Dnaja4_fiveUTR,9,54699728,54699777,54699776,54699777,50,+,GATGGTGAAGGAGACCCAGTACTATGACATCCTGGGCGTGAAGCCCAGCG,Promoter (<=1kb),9,54698873,54714761,15889,1,Dnaja4-202,855,Dnaja4-202;Dnaja4-203;Dnaja4-201,Dnaja4;Dnaja4;Dnaja4,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,4,58233,ENSMUSG00000032285,conserved gene but different region,9,54699776,54700105,330,*,330,31,0.675757576,0.835102041,0.093939394,5.26E-23,CpGisland,TRUE,NA,NRS
12302,cg04712261,-0.0000385,0.0000096,-4.012608623,0.0000753,loss,ns,-0.00000197,0.0000163,-0.120679196,0.904023317,neg,ns,-0.01150733,0.004778543,-2.408125326,0.016618246,neg,ns,1.779414808,0.000212766,0.000164334,1.294720239,0.196380264,pos,ns,0.863579286,Fign,Fign_Intergenic_downstream,2,63878454,63878503,63878454,63878455,50,-,CGAGACAGATGATTAGTTACCCTAAACGATCCTCATCATGCAGAAATTGA,Distal Intergenic,2,63980447,64097988,117542,2,Fign-202,219534,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,28,84,60344,ENSMUSG00000075324,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14327,cg20728253,0.0000768,0.0000127,6.057860183,3.99E-09,gain,yes,-0.0000026,0.0000216,-0.120666099,0.904033682,neg,ns,0.031005042,0.006313455,4.910946732,0.00000147,pos,ns,5.832954665,-0.000772106,0.000217119,-3.556139869,0.000435101,neg,ns,0.361198826,Hic1,Hic1_Exon,11,75167354,75167403,75167402,75167403,50,+,CACCAGGGACTTGAGGTAGGCGCTGCTGGCCGCCAGCACGTTCTTGTGCG,"Exon (Hic1-201/Hic1, exon 2 of 2)",11,75164565,75169519,4955,2,Hic1-201,2116,Hic1-201;Hic1-202;Smg6-201;Smg6-202;Smg6-206,Hic1;Hic1;Smg6;Smg6;Smg6,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,10,15248,ENSMUSG00000043099,conserved gene and region,11,75167374,75167629,256,*,256,19,0.62890625,0.757160648,0.07421875,2.40E-12,CpGisland,TRUE,U3,Pr-B
9263,cg11257011,-0.00000729,0.00000277,-2.634906278,0.008838943,loss,ns,-0.000000567,0.0000047,-0.12060858,0.904079205,neg,ns,-0.000802717,0.001376201,-0.583284986,0.560125562,neg,ns,0.251714607,-0.0000213,0.0000473,-0.449719706,0.653226849,neg,ns,0.922411237,Foxp4,Foxp4_Intron,17,47872472,47872521,47872472,47872473,50,+,CGGCTGGAGTGGAATCTCTTGGAGCGATAATTACAAAGGGCCTAATCACG,"Intron (Foxp4-204/Foxp4, intron 13 of 16)",17,47867133,47924645,57513,2,Foxp4-204,52124,Foxp4-204;Foxp4-203;Foxp4-201;Foxp4-202,Foxp4;Foxp4;Foxp4;Foxp4,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,25,74123,ENSMUSG00000023991,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3739,cg23893313,0.0000873,0.00000638,13.68061753,1.18E-33,gain,yes,-0.00000131,0.0000108,-0.120565166,0.904113565,neg,ns,0.006310651,0.003175455,1.987321934,0.047766458,pos,ns,1.320876959,0.0000411,0.000109204,0.376151969,0.707061216,pos,ns,0.166256907,Nrarp,Nrarp_Exon,2,25181177,25181226,25181177,25181178,50,+,CGCAAGGGCAACACGCAGGAGCTGCAGTCGCTGCTGCAGAACATGACCAA,Promoter (<=1kb),2,25180758,25183339,2582,1,Nrarp-201,419,AL732309.1-201;Nrarp-201,AL732309.1;Nrarp,64896;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,67122,ENSMUSG00000078202,conserved gene and region,2,25180598,25182061,1464,*,1464,152,0.651639344,0.980105266,0.103825137,1.66E-117,CpGisland,TRUE,U3,Pr-B
20945,cg04413152,-0.00000555,0.00000383,-1.450473376,0.147937601,loss,ns,0.000000783,0.0000065,0.120477249,0.904183147,pos,ns,0.013024468,0.001905051,6.836806665,4.31E-11,pos,yes,10.36538718,-0.000355219,0.0000655,-5.421985423,0.000000119,neg,yes,0.907609458,Elp4,Elp4_Intron,2,105787722,105787771,105787722,105787723,50,-,CGCATGATTGTGTCGTGTAAGCTTGTTTTGTGTGAGAGCTGCTGTGGTTT,"Intron (Elp4-202/Elp4, intron 9 of 9)",2,105701027,105904564,203538,2,Elp4-202,116793,Elp4-202;Elp4-201;Elp4-204,Elp4;Elp4;Elp4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,16,77766,ENSMUSG00000027167,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3203,cg04931708,0.000131227,0.0000097,13.52256298,4.55E-33,gain,yes,0.00000199,0.0000165,0.120403079,0.90424185,pos,ns,0.017271107,0.004829937,3.575845393,0.000404807,pos,ns,3.392751477,-0.000447936,0.000166101,-2.696765328,0.007384468,neg,ns,0.083477648,Fezf1,Fezf1_fiveUTR,6,23248254,23248303,23248254,23248255,50,+,CGCAGAGTTCTTGGCGCACCAATGACTCGGGGACAATCACTACTTATTTC,Promoter (<=1kb),6,23245044,23248362,3319,2,Fezf1-201,59,Fezf1-201,Fezf1,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,7,73191,ENSMUSG00000029697,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22700,cg04105396,-0.0000266,0.00000757,-3.508868521,0.000516661,loss,ns,-0.00000155,0.0000129,-0.120364589,0.904272313,neg,ns,-0.000526955,0.003766184,-0.13991756,0.888815989,neg,ns,0.051188142,-0.000124841,0.000129519,-0.963881743,0.335856501,neg,ns,0.907610019,Sox6,Sox6_Intron,7,115746027,115746076,115746075,115746076,50,-,GGCACTGCTACTTGAAATGTGTCAGTACATTGTGGAGCACCTGCACCTCG,"Intron (Sox6-210/Sox6, intron 4 of 15)",7,115470872,116031047,560176,2,Sox6-210,284971,Sox6-210;Sox6-201;Sox6-202;Sox6-204;Sox6-205;Sox6-203;Sox6-212;Sox6-206;Sox6-209;Sox6-214,Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,37,57,20679,ENSMUSG00000051910,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10663,cg26348137,-0.0000022,0.00000219,-1.005976015,0.315211673,loss,ns,0.000000448,0.00000372,0.120313116,0.904313053,pos,ns,-0.002000691,0.001090654,-1.834395872,0.067553534,neg,ns,1.170351925,0.0000276,0.0000375,0.735729003,0.462451931,pos,ns,0.949377039,Gm20521,Gm20521_threeUTR,14,54898031,54898080,54898031,54898032,50,-,CGACATCATGGTATTCCCCTTACTAAAAAAAGTGTGTATTAGGAGGAGAG,3' UTR,14,54883441,54898137,14697,1,Gm20521-201,14590,Gm20521-201;Pabpn1-204;Pabpn1-202;Pabpn1-201;Pabpn1-207;Pabpn1-209;Pabpn1-205;Pabpn1-203;Pabpn1-208;Pabpn1-206,Gm20521;Pabpn1;Pabpn1;Pabpn1;Pabpn1;Pabpn1;Pabpn1;Pabpn1;Pabpn1;Pabpn1,0;5531;0;0;0;0;3458;3429;0;3198,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13060,cg21513672,-0.0000444,0.00000893,-4.967323673,0.00000112,loss,yes,-0.00000182,0.0000152,-0.120228791,0.904379794,neg,ns,-0.012025197,0.004446594,-2.704361346,0.00722161,neg,ns,2.141365991,0.000366764,0.000152918,2.398437138,0.017055952,pos,ns,0.810659988,Tcf4,Tcf4_fiveUTR,18,69347258,69347307,69347258,69347259,50,+,CGGTTATTTCCATGTTTCTAGGTTTGTGTGATTTTGCTAAAATGCATCAC,Promoter (<=1kb),18,69347299,69683198,335900,1,Tcf4-253,0,Tcf4-259;Tcf4-201;Tcf4-207;Tcf4-210;Tcf4-240;Tcf4-254;Tcf4-246;Tcf4-206;Tcf4-202;Tcf4-257;Tcf4-232;Tcf4-215;Tcf4-248;Tcf4-231;Tcf4-205;Tcf4-253;Tcf4-244;Tcf4-233;Tcf4-238;Tcf4-245;Tcf4-249;Tcf4-219;Tcf4-235;Tcf4-227,Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,12,66,21413,ENSMUSG00000053477,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
7104,cg24867198,0.0000209,0.000012,1.745330038,0.08191825,gain,ns,-0.00000244,0.0000203,-0.120213551,0.904391856,neg,ns,0.023655239,0.005948206,3.976869189,0.000087,pos,ns,4.060657421,-0.00045694,0.000204558,-2.233787801,0.026210046,neg,ns,0.416113576,Zfpm2,Zfpm2_Intron,15,40978774,40978823,40978774,40978775,50,+,CGCTGCAAGGTAGGTGATGTCTAGGTTTTTAATCTTCCACTCCGGAGAGG,"Intron (Zfpm2-201/Zfpm2, intron 5 of 7)",15,40655035,41104592,449558,1,Zfpm2-201,323739,Zfpm2-201;Zfpm2-203,Zfpm2;Zfpm2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,41,22762,ENSMUSG00000022306,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12921,cg15831769,-0.0000175,0.00000749,-2.336987004,0.020076345,loss,ns,-0.00000153,0.0000127,-0.120155077,0.904438138,neg,ns,-0.007004257,0.003730243,-1.877694579,0.061361668,neg,ns,1.212102847,0.000175913,0.000128283,1.3712874,0.171277184,pos,ns,0.103617154,Arid5b,Arid5b_Promoter,10,68279181,68279230,68279229,68279230,50,-,GCTTGTATATGTCTAATATAAAGAACATTTCCTGCAGAGATTCCGGGGCG,Promoter (<=1kb),10,68092520,68278740,186221,2,Arid5b-204,-490,Arid5b-204;Arid5b-201;Arid5b-202,Arid5b;Arid5b;Arid5b,0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,16,33,71371,ENSMUSG00000019947,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13562,cg23254987,-0.0000156,0.00000511,-3.045901357,0.002519054,loss,ns,-0.00000104,0.00000868,-0.120014923,0.904549069,neg,ns,-0.000213435,0.002542002,-0.08396334,0.933139773,neg,ns,0.030053299,-0.0000936,0.0000874,-1.070448187,0.285250342,neg,ns,0.938533198,Gm10172,Gm10172_Intron,7,71353777,71353826,71353777,71353778,50,-,CGTGTTTTGAACATAGTATTAATATCCATTACTTGAATTTATGGTATTGG,"Intron (Gm29328-206/Gm29328-206, intron 1 of 3)",7,71332363,71332921,559,2,Gm10172-201,-20905,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,31,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
952,cg17792758,0.000113504,0.00000943,12.03368852,1.26E-27,gain,yes,0.00000192,0.000016,0.119996808,0.904563408,pos,ns,0.020203974,0.004694517,4.303739008,0.0000225,pos,ns,4.646913837,-0.000441421,0.000161444,-2.734206449,0.006612636,neg,ns,0.184250803,Tcf24,Tcf24_Exon,1,9967194,9967243,9967194,9967195,50,+,CGATGTAGGTGGTGGCCAGCAGCAGCACGTCCAGCTTGGACAGCTTGGTG,Promoter (<=1kb),1,9960163,9967932,7770,2,Tcf24-202,689,Ppp1r42-204;Ppp1r42-202;Ppp1r42-201;Ppp1r42-203;Tcf24-202;Tcf24-201,Ppp1r42;Ppp1r42;Ppp1r42;Ppp1r42;Tcf24;Tcf24,18449;36210;41893;41887;0;-4385,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,100039596,ENSMUSG00000099032,conserved gene and region,1,9967005,9968105,1101,*,1101,128,0.722070845,0.89242382,0.116257947,4.38E-106,CpGisland,TRUE,U3,Pr-B
18961,cg12196332,0.0000893,0.0000236,3.783153243,0.000185827,gain,ns,0.00000481,0.0000401,0.119894548,0.904644347,pos,ns,0.048750154,0.011754725,4.147281517,0.0000435,pos,ns,4.36166189,-0.00153413,0.000404244,-3.79505907,0.000177511,neg,ns,0.578679324,Dach1,Dach1_Intron,14,98073381,98073430,98073381,98073382,50,+,CGTCTATCATGCTGCCATGGGAAAGCGAGAGGCGAATGATTCTCAGTGGC,"Intron (Dach1-201/Dach1, intron 1 of 10)",14,97786853,98169543,382691,2,Dach1-201,96113,Dach1-201;Dach1-202;Dach1-203,Dach1;Dach1;Dach1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,76,13134,ENSMUSG00000055639,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5447,cg27350570,0.000058,0.0000108,5.387560543,0.000000142,gain,yes,0.00000219,0.0000183,0.119721902,0.904781,pos,ns,0.020261283,0.005360142,3.779989753,0.000188098,pos,ns,3.725614988,-0.000648452,0.000184335,-3.517796407,0.000500236,neg,ns,0.519929361,Mvb12b,Mvb12b_Intergenic_upstream,2,33966729,33966778,33966729,33966730,50,+,CGCTCGTTACAGAGCACAGGTACTGGCTAAATGTGTCCGATCATTCATCA,Distal Intergenic,2,33729953,33887946,157994,2,Mvb12b-201,-78783,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,16,47,72543,ENSMUSG00000038740,mapped to different genes,2,33966422,33966984,563,*,563,36,0.555950266,0.830587657,0.063943162,1.24E-20,CpGisland,TRUE,NA,NRS
14898,cg02684102,-0.0000171,0.00000595,-2.865014255,0.00445473,loss,ns,0.00000121,0.0000101,0.119721561,0.90478127,pos,ns,-0.005450403,0.002962253,-1.839951724,0.066731226,neg,ns,1.175670894,0.000124857,0.000101872,1.22562733,0.221269253,pos,ns,0.849091238,Gm45288,Gm45288_Intergenic_downstream,8,78120426,78120475,78120426,78120427,50,+,CGGTTCCTGTCCTCTGTGATAGTGAGTTTTAAAAGGGAAATCTCCAAAGA,Distal Intergenic,8,78107960,78108110,151,1,Gm45288-201,12466,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,7,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1515,cg13071028,0.0000356,0.00000397,8.97697138,2.74E-17,gain,yes,0.000000806,0.00000674,0.119687424,0.90480829,pos,ns,0.005026839,0.00197368,2.54693705,0.011350361,pos,ns,1.944990332,-0.0000807,0.0000679,-1.189686641,0.23507994,neg,ns,0.066465591,Sema3a,Sema3a_fiveUTR,5,13399855,13399904,13399903,13399904,50,-,TAAATCACCTGTTACCTCCAGTTTCCAGATTGTTTGAACTTCTCTGGCCG,5' UTR,5,13125593,13524707,399115,1,Sema3a-206,274262,Sema3a-206;Sema3a-202;Sema3a-203;Sema3a-204;Sema3a-201;Sema3a-205;Sema3a-209,Sema3a;Sema3a;Sema3a;Sema3a;Sema3a;Sema3a;Sema3a,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,9,20346,ENSMUSG00000028883,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
22251,cg24407185,-0.0000172,0.00000752,-2.280678469,0.023245881,loss,ns,-0.00000153,0.0000128,-0.119666112,0.904825159,neg,ns,-0.006122929,0.003743414,-1.635653917,0.102926925,neg,ns,0.987471003,-0.0000743,0.000128736,-0.577290285,0.564162388,neg,ns,0.817255222,Kcnc2,Kcnc2_Exon,10,112458475,112458524,112458523,112458524,50,-,TGGTGCTGTGACCAGTGTTATCAGGTGACGACAGTACAGGAAGTGAGCCG,"Exon (Kcnc2-204/Kcnc2, exon 4 of 5)",10,112271121,112463050,191930,1,Kcnc2-204,187354,Kcnc2-204;Kcnc2-201;Kcnc2-202;Kcnc2-205;Kcnc2-203,Kcnc2;Kcnc2;Kcnc2;Kcnc2;Kcnc2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,2,268345,ENSMUSG00000035681,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8898,cg04215507,-0.0000039,0.00000221,-1.764827884,0.078577332,loss,ns,0.00000045,0.00000376,0.119601588,0.904876233,pos,ns,-0.0000588,0.001101246,-0.053353386,0.95748471,neg,ns,0.018868153,0.0000127,0.0000379,0.336245621,0.736913137,pos,ns,0.948812422,Gbf1,Gbf1_Exon,19,46280695,46280744,46280743,46280744,50,+,AGGCGTGCCTGCCAGCTACCATACGGTGTCTTTACAGGTCAGTCAGGACG,"Exon (Gbf1-201/Gbf1, exon 33 of 40)",19,46152509,46286510,134002,1,Gbf1-201,128186,Gbf1-201;Gbf1-213;Gbf1-211;Gbf1-203;Gbf1-202;Gbf1-209;Gbf1-205;Gbf1-206,Gbf1;Gbf1;Gbf1;Gbf1;Gbf1;Gbf1;Gbf1;Gbf1,0;0;0;0;0;-2099;-2257;-3819,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,18,107338,ENSMUSG00000025224,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4772,cg13243219,0.00000028,0.00000108,0.257980594,0.796593063,gain,ns,-0.00000022,0.00000184,-0.119584863,0.904889472,neg,ns,-0.000126862,0.00053986,-0.234989753,0.814371831,neg,ns,0.089177257,0.000000871,0.0000186,0.046930435,0.96259889,pos,ns,0.034515591,Mecom,Mecom_fiveUTR,3,30509781,30509830,30509781,30509782,50,+,CGATTTATCACTTTGATTTGGAGATCTTGTCAGATGGCAATCGCCGAGGA,Promoter (<=1kb),3,29965456,30509822,544367,2,Mecom-207,0,Mecom-212;Mecom-213;Mecom-207;Mecom-208;Mecom-211;Mecom-209,Mecom;Mecom;Mecom;Mecom;Mecom;Mecom,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,13,80,14013,ENSMUSG00000027684,conserved gene and region,3,30509690,30509782,93,*,93,8,0.537634409,1.24,0.086021505,0.00000681,CpGisland,TRUE,U3,Pr-B
13929,cg20197483,-0.00000517,0.00000126,-4.115540212,0.0000496,loss,ns,0.000000255,0.00000213,0.119320355,0.905098844,pos,ns,0.001010274,0.00062524,1.615818895,0.107150684,pos,ns,0.970005051,-0.0000491,0.0000215,-2.282230697,0.023152973,neg,ns,0.038571388,Chd2,Chd2_Exon,7,73538027,73538076,73538027,73538028,50,+,CGAGTACACAGTGCAATGCAGTATGTCTGTCAGCGCTGCGGCACAAAGGA,"Exon (Gm44686-201/Gm44686-201, exon 1 of 4)",7,73426638,73541746,115109,2,Chd2-203,3670,Chd2-203;Chd2-201;Chd2-204;Chd2-207;Chd2-208;Chd2-216;Chd2-214,Chd2;Chd2;Chd2;Chd2;Chd2;Chd2;Chd2,0;0;-406;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,16,244059,ENSMUSG00000078671,conserved gene but different region,7,73537674,73538066,393,*,393,37,0.638676845,0.941530692,0.094147583,2.15E-27,CpGisland,TRUE,U1,Pr-A
27718,cg17088924,-0.00000126,0.00000313,-0.400985158,0.68870729,loss,ns,-0.000000634,0.00000532,-0.119215827,0.905181586,neg,ns,-0.000279415,0.001557956,-0.179346859,0.85778252,neg,ns,0.066622808,0.0000773,0.0000536,1.443419055,0.149912213,pos,ns,0.944648787,Gm14294,Gm14294_Intergenic_downstream,2,179371420,179371469,179371468,179371469,50,+,TAATGTGTCTGCTGAAAGAATGTCTAATTACCCTGTCATTGAACAAAGCG,Distal Intergenic,2,179364293,179365043,751,1,Gm14294-201,7127,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,100039413,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6666,cg00608221,0.000101636,0.0000144,7.074873346,1.00E-11,gain,yes,0.00000291,0.0000244,0.119050309,0.905312608,pos,ns,0.028141377,0.007149977,3.935869774,0.000102386,pos,ns,3.98975806,-0.000887368,0.000245887,-3.608843733,0.00035847,neg,ns,0.696002538,Uri1,Uri1_Intron,7,37970783,37970832,37970783,37970784,50,-,CGGTGTAAACAGTTCATAAAATCTCACAGCCCTGATGTCGCTCTAGATCA,"Intron (Uri1-201/Uri1, intron 4 of 10)",7,37959992,38019542,59551,2,Uri1-201,48710,Uri1-201;Uri1-204;Uri1-206;Uri1-207;Uri1-205,Uri1;Uri1;Uri1;Uri1;Uri1,0;-1155;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,27,19777,ENSMUSG00000030421,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12492,cg15181287,-0.00000307,0.00000804,-0.381984191,0.702734809,loss,ns,-0.00000162,0.0000137,-0.118979538,0.90536863,neg,ns,0.019512937,0.00400063,4.877466005,0.00000172,pos,ns,5.764343985,-0.000604798,0.000137581,-4.395930275,0.0000152,neg,ns,0.645955255,Grid2,Grid2_Exon,6,64665900,64665949,64665948,64665949,50,-,ATAGCTTGTGCACAGATGACGACAGCCCCCATAAACAGTTTTCCACCTCG,"Exon (Grid2-201/Grid2, exon 16 of 16)",6,63256027,64668285,1412259,1,Grid2-201,1409873,Grid2-201;Grid2-207,Grid2;Grid2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,10,14804,ENSMUSG00000071424,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8979,cg05990001,0.0000338,0.00000544,6.215331946,1.65E-09,gain,yes,-0.0000011,0.00000925,-0.118871771,0.905453939,neg,ns,0.006147669,0.00270969,2.268772168,0.02396941,pos,ns,1.620342664,-0.000176611,0.0000932,-1.895254176,0.058988866,neg,ns,0.073840213,Ttbk1,Ttbk1_threeUTR,17,46454133,46454182,46454181,46454182,50,-,GTTCCTGGAAGGCGTCTTTAATCAGGATTTGGTAGTACACAAGCTCTCCG,3' UTR,17,46442448,46487675,45228,2,Ttbk1-201,33493,Ttbk1-201;Ttbk1-203,Ttbk1;Ttbk1,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,7,106763,ENSMUSG00000015599,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
21831,cg25869701,0.0000106,0.00000443,2.403713311,0.016816334,gain,ns,-0.000000894,0.00000752,-0.118846631,0.90547384,neg,ns,0.00070765,0.002203671,0.321123351,0.748333301,pos,ns,0.125904928,-0.0000583,0.0000758,-0.768836708,0.442575595,neg,ns,0.913586197,Lmo1,Lmo1_Intron,7,109221762,109221811,109221762,109221763,50,+,CGCTTGCATTTGAGACATATTGTGACACTTCATAACTGTGTGCAAATAAG,"Intron (Gm45024-201/Gm45024-201, intron 1 of 2)",7,109138675,109175207,36533,2,Lmo1-202,-46555,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,66,109594,ENSMUSG00000036111,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25413,cg02588333,-0.00000967,0.00000467,-2.073486562,0.038952623,loss,ns,-0.000000942,0.00000793,-0.118810878,0.905502142,neg,ns,-0.009463344,0.002322181,-4.075197162,0.0000585,neg,ns,4.233098279,0.000168941,0.0000799,2.115477555,0.035186586,pos,ns,0.902762091,Cux1,Cux1_Exon,5,136311512,136311561,136311512,136311513,50,+,CGTTTCGGTACTTCCTGAAATAGTCTGTTCAGGCTCTGGCCTGGATTCTC,"Exon (Cux1-201/Cux1, exon 16 of 24)",5,136248135,136360018,111884,2,Cux1-205,48457,Cux1-205;Cux1-207;Cux1-211;Cux1-203;Cux1-213;Cux1-201;Cux1-204;Cux1-209;Cux1-212;Cux1-206;Cux1-208,Cux1;Cux1;Cux1;Cux1;Cux1;Cux1;Cux1;Cux1;Cux1;Cux1;Cux1,0;0;0;0;0;0;0;0;0;0;51734,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,21,13047,ENSMUSG00000029705,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21121,cg16616888,0.0000149,0.00000303,4.909428432,0.00000148,gain,yes,0.000000612,0.00000515,0.11866533,0.905617361,pos,ns,0.004856422,0.001510209,3.21572858,0.001438457,pos,ns,2.842103104,-0.000143677,0.0000519,-2.7664301,0.006007557,neg,ns,0.057802405,Gm3191,Gm3191_Intergenic_downstream,12,106479489,106479538,106479537,106479538,50,-,AAGTGTCCAGGCCATAAATTCTTCTCAATTCCCTCTCTCTCTCCTTGTCG,Distal Intergenic,12,106459150,106459495,346,1,Gm3191-201,20388,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,11,13,100041191,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16126,cg20341609,0.00000285,0.0000108,0.263641807,0.792231102,gain,ns,-0.00000218,0.0000184,-0.118432861,0.905801394,neg,ns,0.0136876,0.00538398,2.542283051,0.011499426,pos,ns,1.939323853,-0.000237164,0.000185155,-1.280896377,0.201187495,neg,ns,0.403154204,Pcdh17,Pcdh17_Exon,14,84477523,84477572,84477523,84477524,50,-,CGTTTAAGGACCCAGAAAGAGCCAGCCTGAGAGACAGTGGGCACGGGGAC,"Exon (Pcdh17-201/Pcdh17, exon 3 of 4)",14,84443563,84539002,95440,1,Pcdh17-201,33960,Pcdh17-201;Pcdh17-202,Pcdh17;Pcdh17,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,13,219228,ENSMUSG00000035566,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20285,cg22202865,0.00000242,0.00000572,0.423578264,0.672167145,gain,ns,0.00000115,0.00000972,0.118412229,0.905817726,pos,ns,-0.002487731,0.002848482,-0.873352996,0.383146712,neg,ns,0.416634897,-0.000131612,0.000098,-1.34354523,0.180078115,neg,ns,0.20316146,Gm8730,Gm8730_Intergenic_upstream,8,102983936,102983985,102983984,102983985,50,+,TGATTAAAGCCCTCAGAACAAGCAAAGTGTAATTGAAGCAGTGCCTGGCG,Distal Intergenic,8,102864845,102865798,954,2,Gm8730-201,-118138,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,4,667618,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7664,cg03232860,0.000033,0.00000406,8.12341455,1.09E-14,gain,yes,-0.000000817,0.0000069,-0.118387627,0.905837203,neg,ns,0.007244494,0.002022422,3.582087471,0.000395632,pos,ns,3.40270848,-0.000134122,0.0000696,-1.928400972,0.054718262,neg,ns,0.118471904,Nkx2-3,Nkx2-3_Intergenic_downstream,19,43616585,43616634,43616585,43616586,50,-,CGGGAAGGTGCGGAAAGAATGGCTTTTTATTGGAGTCCCGAACAAAAGGT,Downstream (<1kb),19,43612325,43615892,3568,1,Nkx2-3-201,4309,Nkx2-3-201,Nkx2-3,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,5,6,18089,ENSMUSG00000044220,conserved gene and region,19,43616270,43616905,636,*,636,57,0.682389937,0.781074268,0.089622642,1.32E-40,CpGisland,TRUE,U13,Hc-P
25690,cg01428642,0.0000152,0.0000119,1.279435187,0.201700619,gain,ns,-0.00000239,0.0000202,-0.118277289,0.905924554,neg,ns,-0.0000334,0.005928391,-0.005636555,0.995506329,neg,ns,0.001955974,0.000191692,0.000203877,0.940233457,0.347829876,pos,ns,0.781676392,Lmo3,Lmo3_Exon,6,138416553,138416602,138416553,138416554,50,+,CGGTCCTTGATCTTTCGGTTGCAGCCAGCACAACCTTTCGGCTTGGTGTC,"Exon (Lmo3-204/Lmo3, exon 3 of 5)",6,138362918,138581968,219051,2,Lmo3-204,165366,Lmo3-204;Lmo3-207;Lmo3-201;Lmo3-206;Lmo3-202;Lmo3-208;Lmo3-203;Lmo3-205,Lmo3;Lmo3;Lmo3;Lmo3;Lmo3;Lmo3;Lmo3;Lmo3,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,38,109593,ENSMUSG00000030226,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6581,cg24059119,0.0000043,0.00000274,1.569344037,0.117587914,gain,ns,0.00000055,0.00000465,0.118248799,0.905947108,pos,ns,-0.002049865,0.001362482,-1.504507274,0.133468933,neg,ns,0.874619811,0.0000713,0.0000469,1.522487576,0.12890635,pos,ns,0.051749257,Zfp536,Zfp536_Promoter,7,37773682,37773731,37773682,37773683,50,+,CGCCTCCCGCGCCTGCCATTAGAGGCGACTTTATTTACAGACACTATTTA,Promoter (<=1kb),7,37569629,37773641,204013,2,Zfp536-208,-41,Zfp536-202;Zfp536-201;Zfp536-203;Zfp536-206;Zfp536-209;Zfp536-208;Zfp536-205;Zfp536-207;Zfp536-210,Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536,0;0;0;0;0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,4,112,243937,ENSMUSG00000043456,conserved gene and region,7,37773505,37773708,204,*,204,20,0.558823529,1.259259259,0.098039216,2.20E-15,CpGisland,TRUE,U13,Hc-P
1662,cg14589387,-0.00000445,0.00000706,-0.630007297,0.529153895,loss,ns,-0.00000142,0.000012,-0.118247712,0.905947969,neg,ns,0.002805244,0.003514535,0.79818353,0.425375016,pos,ns,0.371228022,-0.0000595,0.000120865,-0.492311361,0.622847719,neg,ns,0.810823574,Zfp521,Zfp521_Intergenic_upstream,18,14119766,14119815,14119766,14119767,50,+,CGGGAGAAAGAAATTGTGTCCAGACGCAGCCATGGGAATGGAATTTCCCA,Distal Intergenic,18,13687013,13972787,285775,2,Zfp521-201,-146979,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,81,225207,ENSMUSG00000024420,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
481,cg26376143,-0.00000106,0.00000295,-0.359203653,0.719687284,loss,ns,0.000000593,0.00000501,0.118228617,0.905963086,pos,ns,0.001416495,0.001468893,0.964327957,0.335633171,pos,ns,0.474135124,-0.0000869,0.0000505,-1.720702637,0.086302621,neg,ns,0.950804831,Epc1,Epc1_threeUTR,18,6436021,6436070,6436069,6436070,50,+,TAAAAACCTTAAGGATAATGTATGCCATTGGACTGGGCATTCAGACTTCG,3' UTR,18,6435951,6516108,80158,2,Epc1-203,80038,Epc1-203;Epc1-201;Epc1-204,Epc1;Epc1;Epc1,0;0;5824,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,8,13831,ENSMUSG00000024240,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9157,cg26594414,-0.00000811,0.00000334,-2.43079463,0.015632583,loss,ns,-0.00000067,0.00000567,-0.118152782,0.906023122,neg,ns,-0.002009951,0.001660732,-1.210280271,0.227093369,neg,ns,0.643795547,0.0000909,0.0000571,1.590887602,0.112654088,pos,ns,0.97376958,Sh3pxd2a,Sh3pxd2a_Exon,19,47283023,47283072,47283023,47283024,50,+,CGGCTGTGCTGCCTGTTGACCATCCCGCCCAGGGTCCACCGGCGATCCAG,"Exon (Sh3pxd2a-201/Sh3pxd2a, exon 10 of 15)",19,47260174,47464401,204228,2,Sh3pxd2a-201,181329,Sh3pxd2a-201;Sh3pxd2a-203;Sh3pxd2a-202,Sh3pxd2a;Sh3pxd2a;Sh3pxd2a,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,6,14218,ENSMUSG00000053617,conserved gene and region,19,47282992,47283153,162,*,162,14,0.679012346,0.749752066,0.086419753,4.14E-10,CpGisland,TRUE,U11,Tr-P
6321,cg26205390,-0.0000178,0.0000134,-1.32376949,0.186554943,loss,ns,-0.0000027,0.0000228,-0.118138967,0.90603406,neg,ns,0.020695143,0.006686386,3.095116393,0.002146853,pos,ns,2.668197779,-0.000775714,0.000229944,-3.373486962,0.000836458,neg,ns,0.825310371,4932438A13Rik,4932438A13Rik_Exon,3,36887819,36887868,36887819,36887820,50,+,CGAGTCATGCTTGTTCCTAGTCCAAGATATGTTGGTCTTCAAAATGATGA,"Exon (4932438A13Rik-221/4932438A13Rik, exon 9 of 9)",3,36863104,36890341,27238,1,4932438A13Rik-221,24715,4932438A13Rik-221;4932438A13Rik-201;4932438A13Rik-207;4932438A13Rik-203;4932438A13Rik-218;4932438A13Rik-202;4932438A13Rik-217;4932438A13Rik-205;4932438A13Rik-223;4932438A13Rik-206,4932438A13Rik;4932438A13Rik;4932438A13Rik;4932438A13Rik;4932438A13Rik;4932438A13Rik;4932438A13Rik;4932438A13Rik;4932438A13Rik;4932438A13Rik,0;0;0;0;0;0;0;0;0;-2951,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,229227,ENSMUSG00000037270,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20685,cg13739934,0.0000658,0.00000422,15.58295663,7.80E-41,gain,yes,-0.000000846,0.00000717,-0.118066185,0.90609168,neg,ns,0.007263782,0.002100175,3.458654968,0.000618849,pos,ns,3.208415515,-0.0000049,0.0000722,-0.067840269,0.945956522,neg,ns,0.103799339,Pou4f1,Pou4f1_Exon,14,104466836,104466885,104466836,104466837,50,+,CGTCTCGTCCAGGCTGGCGAAGAGGTTGCTCTGCAGCTGCAGGCGACACA,"Exon (Pou4f1-201/Pou4f1, exon 2 of 3)",14,104461676,104467999,6324,2,Pou4f1-201,1114,Pou4f1-201;Pou4f1-202,Pou4f1;Pou4f1,0;-1471,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,31,18996,ENSMUSG00000048349,mapped to different genes,14,104465680,104466880,1201,*,1201,169,0.729392173,1.061175942,0.14071607,3.29E-156,CpGisland,TRUE,U3,Pr-B
16336,cg19239233,0.0000734,0.00000478,15.33454542,6.89E-40,gain,yes,0.000000959,0.00000813,0.118004657,0.90614039,pos,ns,0.001536533,0.002380814,0.645381253,0.519157524,pos,ns,0.284700847,0.0000282,0.0000819,0.344740186,0.73052347,pos,ns,0.124216611,Rfx4,Rfx4_Promoter,10,84756006,84756055,84756054,84756055,50,+,TTCTTATTCAAAACAGGCCCACAATGGGCTTCACAGTGCGCCTCGCCACG,Promoter (<=1kb),10,84756062,84906144,150083,1,Rfx4-202,-7,Rfx4-202,Rfx4,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,13,71137,ENSMUSG00000020037,mapped to different genes,10,84756044,84756276,233,*,233,17,0.557939914,1.02510352,0.072961373,5.60E-11,CpGisland,TRUE,U13,Hc-P
953,cg23284252,-0.000159347,0.0000182,-8.758581769,1.31E-16,loss,yes,-0.00000365,0.0000309,-0.117994382,0.906148525,neg,ns,-0.031949308,0.009054978,-3.528369499,0.000481417,neg,ns,3.317478498,0.000581696,0.0003114,1.868002369,0.06270503,pos,ns,0.564949892,Gm5182,Gm5182_Intergenic_upstream,12,9997347,9997396,9997347,9997348,50,-,CGAAGCAAAATGGGCTTGAAGAGGCTTATAAAAAAGACTCAAAAGGTTTC,Distal Intergenic,12,10152142,10158233,6092,1,Gm5182-201,-154795,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,4,382567,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15732,cg05963512,0.00000746,0.00000378,1.971309058,0.049577634,gain,ns,-0.000000758,0.00000643,-0.117929023,0.90620027,neg,ns,-0.001136183,0.00188303,-0.603380052,0.546697103,neg,ns,0.262253228,-0.00000425,0.0000648,-0.065584598,0.947750826,neg,ns,0.901992587,Rnf150,Rnf150_Exon,8,83003578,83003627,83003578,83003579,50,-,CGACTGGGGGATGCAGCAAAGAAAGCCATCAGCAAACTCCAGATCAGGAC,"Exon (Rnf150-201/Rnf150, exon 3 of 7)",8,82863356,83091268,227913,1,Rnf150-201,140222,Rnf150-201,Rnf150,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,330812,ENSMUSG00000047747,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5601,cg25915235,-0.0000313,0.00000576,-5.442320442,0.000000107,loss,yes,-0.00000115,0.00000978,-0.117914142,0.906212051,neg,ns,-0.003786418,0.002865157,-1.32153926,0.187296091,neg,ns,0.727471286,0.000032,0.0000985,0.324277186,0.745946882,pos,ns,0.89541067,Pbx3,Pbx3_Exon,2,34302755,34302804,34302803,34302804,50,-,TCACTTTTAATCAAGCTTCCTGTTGTAAGAGCTCAGCAGACAGTGACGCG,"Exon (C79798-201/C79798-201, exon 2 of 2)",2,34171457,34372038,200582,2,Pbx3-202,69234,Pbx3-202;Pbx3-201;Pbx3-206;Pbx3-207;Pbx3-209;Pbx3-204;Pbx3-205;Pbx3-203,Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,82,18516,ENSMUSG00000038718,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10399,cg00273046,-0.0000562,0.00000778,-7.230884258,3.77E-12,loss,yes,-0.00000156,0.0000132,-0.11789441,0.906227673,neg,ns,-0.006091072,0.003870344,-1.573780534,0.116558191,neg,ns,0.933457202,-0.00000117,0.000133101,-0.008794886,0.992988444,neg,ns,0.900090675,Npas3,Npas3_Intron,12,53351563,53351612,53351563,53351564,50,-,CGTGAAATGTGACTTCCTAAGCTTGTCATGCATCAAACTGTTATGGCTGG,"Intron (Npas3-204/Npas3, intron 1 of 10)",12,53248157,54069532,821376,1,Npas3-204,103406,Npas3-204;Npas3-201;Npas3-202;Npas3-203,Npas3;Npas3;Npas3;Npas3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,83,103,27386,ENSMUSG00000021010,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13835,cg21660871,0.0000452,0.00000478,9.453958954,8.37E-19,gain,yes,0.000000957,0.00000812,0.117894242,0.906227806,pos,ns,0.010383873,0.002378895,4.364997759,0.0000173,pos,ns,4.760901143,-0.000125245,0.0000818,-1.530921918,0.126808489,neg,ns,0.100459599,Six1,Six1_Intron,12,73052059,73052108,73052107,73052108,50,+,CTCTTTCCGGGTCATTACGGTACTGCTGGTCTCTAATCAATCCTAATGCG,"Intron (Six1-203/Six1, intron 1 of 1)",12,73043531,73053887,10357,2,Six1-203,1779,Six1-201;Six1-203,Six1;Six1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,18,20471,ENSMUSG00000051367,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
21822,cg18517878,0.0000265,0.00000625,4.242819057,0.0000292,gain,ns,0.00000125,0.0000106,0.117800794,0.906301789,pos,ns,-0.008177249,0.00311215,-2.627523819,0.009028688,neg,ns,2.044375378,0.000399819,0.000107027,3.735700011,0.000222774,pos,ns,0.729133991,Rgs9,Rgs9_Intergenic_downstream,11,109210498,109210547,109210498,109210499,50,-,CGACATTATCAGAGCAGAGAAAGGCCGCTGTGAGTTTTGCCTTTCAGCCT,Distal Intergenic,11,109239511,109246965,7455,2,Rgs9-205,36467,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,3,19739,ENSMUSG00000020599,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9747,cg01848382,0.000000833,0.000000677,1.230717878,0.219361385,gain,ns,0.000000135,0.00000115,0.117774011,0.906322994,pos,ns,0.000356978,0.000336778,1.059981927,0.289977985,pos,ns,0.537634972,-0.0000031,0.0000116,-0.26753127,0.789238046,neg,ns,0.023844407,Nkapd1,Nkapd1_fiveUTR,9,50616699,50616748,50616699,50616700,50,-,CGAAGAACCACTCCATTACAAGATCTCCTCCGACCCAGGAAGCCAAGGAG,Promoter (<=1kb),9,50605240,50617464,12225,2,Nkapd1-201,716,Nkapd1-201;Nkapd1-205;Nkapd1-202;Nkapd1-204;Nkapd1-203;Pih1d2-201;Pih1d2-202;Pih1d2-206;Pih1d2-204;Pih1d2-207;Pih1d2-205;Pih1d2-203,Nkapd1;Nkapd1;Nkapd1;Nkapd1;Nkapd1;Pih1d2;Pih1d2;Pih1d2;Pih1d2;Pih1d2;Pih1d2;Pih1d2,0;0;0;0;0;-573;-585;-589;-635;-773;-802;-1259,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,3,270156,ENSMUSG00000059820,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
23547,cg04912914,0.0000374,0.00000335,11.14468263,1.75E-24,gain,yes,-0.000000671,0.00000569,-0.117766086,0.906329268,neg,ns,0.007938784,0.001668393,4.758341816,0.000003,pos,ns,5.523233465,-0.0000721,0.0000574,-1.255956427,0.210077506,neg,ns,0.105258967,Sp8,Sp8_Promoter,12,118841767,118841816,118841815,118841816,50,-,TCCCAGAGTAACATTTATCTTCCCAAAACTGCGATTGCAATTGTCAACCG,Promoter (4-5kb),12,118846329,118852576,6248,1,Sp8-201,-4562,Sp8-201,Sp8,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,27,29,320145,ENSMUSG00000048562,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
19003,cg15498889,0.00000127,0.00000266,0.478212391,0.632836105,gain,ns,-0.000000532,0.00000452,-0.117670965,0.906404577,neg,ns,-0.002158639,0.001325248,-1.628856952,0.104359059,neg,ns,0.981469847,0.0000455,0.0000456,0.998491395,0.318819879,pos,ns,0.855035298,Med1,Med1_Exon,11,98158103,98158152,98158103,98158104,50,-,CGGACTCGAGCCAATGGTAGACCCCCCGTTCCCTGTGATTTGCAACAAAC,"Exon (Med1-203/Med1, exon 17 of 17)",11,98152154,98193260,41107,2,Med1-202,35108,Med1-202;Med1-203;Med1-204;Med1-201;Med1-207,Med1;Med1;Med1;Med1;Med1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,13,19014,ENSMUSG00000018160,conserved gene but different region,11,98158040,98158130,91,*,91,8,0.648351648,0.912280702,0.087912088,0.0000058,CpGisland,TRUE,U10,Tr-S
12789,cg03953623,0.0000035,0.00000451,0.77598686,0.438348351,gain,ns,0.0000009,0.00000766,0.117533889,0.906513104,pos,ns,0.0000476,0.002244502,0.021186104,0.983110829,pos,ns,0.00739752,0.0000282,0.0000772,0.36519276,0.715216554,pos,ns,0.936009036,Rsrc1,Rsrc1_Intron,3,67191716,67191765,67191716,67191717,50,+,CGGAAAGTGCAGATAGACCTAAGAAGACATTATCTCTTGATGATTGCAGT,"Intron (Rsrc1-206/Rsrc1, intron 5 of 9)",3,66981390,67356559,375170,1,Rsrc1-206,210326,Rsrc1-206;Rsrc1-203;Rsrc1-202;Rsrc1-201;Rsrc1-209;Rsrc1-205,Rsrc1;Rsrc1;Rsrc1;Rsrc1;Rsrc1;Rsrc1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,37,66880,ENSMUSG00000034544,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9548,cg04514601,-0.0000017,0.00000474,-0.359369244,0.719563544,loss,ns,0.000000946,0.00000805,0.117530715,0.906515617,pos,ns,-0.004788321,0.002359261,-2.029585312,0.043252617,neg,ns,1.363987609,0.0000635,0.0000811,0.782258489,0.434659776,pos,ns,0.903497841,Mbd5,Mbd5_Exon,2,49256374,49256423,49256422,49256423,50,+,CCCCGACAGAGATTGGGCAGCAGTGAACATGGACAGAAATCTCCATTCCG,"Exon (Mbd5-202/Mbd5, exon 11 of 11)",2,48949508,49260558,311051,1,Mbd5-202,306866,Mbd5-202;Mbd5-203;Mbd5-201;Mbd5-215;Mbd5-204,Mbd5;Mbd5;Mbd5;Mbd5;Mbd5,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,10,109241,ENSMUSG00000036792,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1800,cg06035086,0.0000886,0.0000145,6.105221785,3.07E-09,gain,yes,0.0000029,0.0000247,0.117439848,0.906587561,pos,ns,0.047337286,0.007222813,6.553857193,2.34E-10,pos,ns,9.631317117,-0.001610175,0.000248392,-6.482394619,3.55E-10,neg,yes,0.45209773,Foxp2,Foxp2_Intron,6,15370530,15370579,15370530,15370531,50,-,CGATCAAGACTGCTAATGCATAATGATTTATAAAATGAAAAATGTGTAGT,"Intron (Foxp2-207/Foxp2, intron 5 of 18)",6,14901349,15441977,540629,1,Foxp2-207,469181,Foxp2-207;Foxp2-213;Foxp2-205;Foxp2-204;Foxp2-201;Foxp2-210;Foxp2-214;Foxp2-212;Foxp2-209;Foxp2-202,Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,38,65,114142,ENSMUSG00000029563,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24757,cg15286080,0.00000114,0.00000069,1.655487105,0.098837656,gain,ns,-0.000000138,0.00000117,-0.117431245,0.906594371,neg,ns,0.000451032,0.000343524,1.312957001,0.190168521,pos,ns,0.72086137,-0.000012,0.0000118,-1.019924557,0.308559535,neg,ns,0.015019087,Ankrd52,Ankrd52_Exon,10,128377570,128377619,128377570,128377571,50,-,CGCCCCTGGTCCAGGCCATCTTTAGCCGAGATGTGGAGGAAGTGCGTTCC,Promoter (<=1kb),10,128377115,128385496,8382,1,Ankrd52-203,455,Ankrd52-203;Ankrd52-201,Ankrd52;Ankrd52,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,12,237615,ENSMUSG00000014498,conserved gene and region,10,128377291,128377628,338,*,338,34,0.733727811,0.754464286,0.100591716,3.01E-26,CpGisland,TRUE,U1,Pr-A
8594,cg00615662,0.000000431,0.000000525,0.822227305,0.411579507,gain,ns,0.000000105,0.000000891,0.117365456,0.90664646,pos,ns,-0.000228492,0.000261179,-0.874850098,0.382332761,neg,ns,0.417558487,0.00000736,0.00000898,0.819910308,0.412897193,pos,ns,0.988014401,Btrc,Btrc_Exon,19,45423174,45423223,45423222,45423223,50,-,GGCGGACAGCATGCCTTCGCTGCGATGCCTGTATAACCCAGGGACTGGCG,"Exon (Btrc-201/Btrc, exon 2 of 15)",19,45363734,45507736,144003,1,Btrc-204,59440,Btrc-204;Btrc-201;Btrc-210;Btrc-206;Btrc-202;Btrc-207;Btrc-203,Btrc;Btrc;Btrc;Btrc;Btrc;Btrc;Btrc,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,30,98,12234,ENSMUSG00000025217,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4895,cg26294963,0.0000126,0.0000105,1.20559589,0.22889275,gain,ns,-0.00000208,0.0000178,-0.117249395,0.906738352,neg,ns,-0.005727264,0.005209295,-1.099431767,0.272432855,neg,ns,0.564740518,-0.0000482,0.000179147,-0.26912983,0.78800881,neg,ns,0.845147815,Zfp513,Zfp513_Exon,5,31200366,31200415,31200414,31200415,50,+,CGCCTCAGGTTGCCCAGGCTGCTGCAGGCAAAGGGGCAGTGGGGACAGCG,"Exon (Zfp513-202/Zfp513, exon 3 of 4)",5,31198981,31202303,3323,2,Zfp513-202,1888,Ppm1g-205;Ppm1g-201;Ppm1g-206;Ppm1g-203;Ppm1g-204;Snx17-201;Snx17-205;Snx17-202;Snx17-204;Snx17-210;Snx17-208;Snx17-207;Snx17-211;Snx17-209;Snx17-206;Snx17-203;Zfp513-202;Zfp513-201;Zfp513-205;Zfp513-207;Zfp513-203;Zfp513-204;Zfp513-208;Zfp513-206,Ppm1g;Ppm1g;Ppm1g;Ppm1g;Ppm1g;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Snx17;Zfp513;Zfp513;Zfp513;Zfp513;Zfp513;Zfp513;Zfp513;Zfp513,0;0;4668;0;0;0;0;0;0;0;0;0;5523;0;0;0;0;0;0;-80;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,15,15,101023,ENSMUSG00000043059,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
118,cg21536129,-0.00000496,0.00000174,-2.855109165,0.004592319,loss,ns,0.000000346,0.00000295,0.117248095,0.906739381,pos,ns,0.000967397,0.000864366,1.119199068,0.263921664,pos,ns,0.57852496,-0.0000165,0.0000297,-0.553626413,0.580233626,neg,ns,0.952310828,Elavl1,Elavl1_threeUTR,8,4289596,4289645,4289596,4289597,50,-,CGAGTTATTTGTGGGACTTGTTGGTTTTGAAGGAAACCTGTAAGATTTTG,3' UTR,8,4285382,4325413,40032,2,Elavl1-201,35768,Elavl1-201;Elavl1-204,Elavl1;Elavl1,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,5,15568,ENSMUSG00000040028,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6950,cg24643424,-0.0000246,0.00000408,-6.035617712,4.52E-09,loss,yes,-0.000000812,0.00000693,-0.117247813,0.906739605,neg,ns,-0.0000975,0.002029142,-0.048068993,0.961692211,neg,ns,0.016963901,-0.0000487,0.0000698,-0.697318144,0.486126338,neg,ns,0.913432858,Map4k4,Map4k4_Exon,1,40011621,40011670,40011621,40011622,50,+,CGAGACAAGTGTGCCTGTTTTTTCTACAGAGTACAGTTGACCAAAAGCGT,"Exon (Map4k4-213/Map4k4, exon 22 of 31)",1,39900913,40026310,125398,1,Map4k4-201,110708,Map4k4-201;Map4k4-202;Map4k4-213;Map4k4-218;Map4k4-215;Map4k4-217;Map4k4-209;Map4k4-208;Map4k4-205;Map4k4-207;Map4k4-210,Map4k4;Map4k4;Map4k4;Map4k4;Map4k4;Map4k4;Map4k4;Map4k4;Map4k4;Map4k4;Map4k4,0;0;0;0;0;0;0;0;0;4228;-2182,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,12,26921,ENSMUSG00000026074,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15964,cg03932150,0.0000249,0.0000134,1.858017957,0.064114354,gain,ns,-0.00000267,0.0000228,-0.117243512,0.90674301,neg,ns,0.000536316,0.006672005,0.080383079,0.935984453,pos,ns,0.028731365,-0.0000567,0.00022945,-0.24700422,0.805068455,neg,ns,0.326116439,Gm8447,Gm8447_Intron,13,84059646,84059695,84059694,84059695,50,+,AGGCATATTGAAAACTATATTAAATTACCCTGATTAACAATTTAGCCACG,"Intron (Gm17750-201/Gm17750-201, intron 1 of 1)",13,83997547,83998439,893,2,Gm8447-201,-61207,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,9,667081,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2702,cg18839351,-0.0000385,0.0000104,-3.698747561,0.000256233,loss,ns,0.00000207,0.0000177,0.117200171,0.906777326,pos,ns,-0.008799034,0.00518041,-1.6985207,0.090412887,neg,ns,1.043769661,-0.0000728,0.000178154,-0.408532253,0.683165012,neg,ns,0.803116146,Gm4837,Gm4837_Intergenic_downstream,18,21428947,21428996,21428995,21428996,50,-,TCTGGAGAAGTTTAAGTGCCATGAATCACCCAAACCTCATCTAAGTCTCG,Distal Intergenic,18,21492516,21494099,1584,2,Gm4837-201,65152,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,225264,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26459,cg05632694,-0.00000702,0.00000226,-3.098098359,0.002126017,loss,ns,-0.000000451,0.00000385,-0.117148985,0.906817853,neg,ns,-0.001321575,0.001127,-1.172649044,0.241836884,neg,ns,0.616477461,-0.00000103,0.0000388,-0.026646379,0.978758926,neg,ns,0.942296416,Mtor,Mtor_Exon,4,148454615,148454664,148454663,148454664,50,-,TTCTTTGACAACATTTTTGTGGCCGTGTGGGACCCCAAACAGGCCATCCG,"Exon (Mtor-203/Mtor, exon 3 of 3)",4,148448611,148454969,6359,1,Mtor-203,6004,Mtor-203;Mtor-202;Mtor-201,Mtor;Mtor;Mtor,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,5,56717,ENSMUSG00000028991,conserved gene and region,4,148454663,148454782,120,*,120,9,0.616666667,0.794117647,0.075,0.0000042,CpGisland,TRUE,U10,Tr-S
1147,cg25253213,0.0000391,0.0000105,3.737524278,0.000221233,gain,ns,0.00000208,0.0000178,0.117056881,0.906890779,pos,ns,0.023009763,0.005205379,4.420381657,0.0000136,pos,ns,4.865064502,-0.00067343,0.000179013,-3.76191494,0.000201584,neg,ns,0.679153018,Rpl23a-ps13,Rpl23a-ps13_Intergenic_upstream,X,11822000,11822049,11822000,11822001,50,-,CGGCTGCTCCCCATGCCAGGTGCAGCTGCCAGGATTCTCAATGCGGTTTG,Distal Intergenic,20,11867265,11867705,441,1,Rpl23a-ps13-201,-45265,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,13,14,628338,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
408,cg18782333,0.0000475,0.0000152,3.1199331,0.001979036,gain,ns,0.00000303,0.0000259,0.116934816,0.906987428,pos,ns,0.034824278,0.007581069,4.59358421,0.00000635,pos,ns,5.197558375,0.000215012,0.000260712,0.824709395,0.410170717,pos,ns,0.677608891,Xbp1,Xbp1_Exon,11,5524277,5524326,5524277,5524278,50,+,CGCAGCACTCAGACTACGTGCACCTCTGCAGCAGGTGCAGGCCCAGTTGT,"Exon (Xbp1-201/Xbp1, exon 4 of 5)",11,5520659,5525893,5235,1,Xbp1-201,3618,Ccdc117-201;Xbp1-201;Xbp1-205;Xbp1-202;Xbp1-204;Xbp1-203,Ccdc117;Xbp1;Xbp1;Xbp1;Xbp1;Xbp1,17861;0;0;3272;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,22433,ENSMUSG00000020484,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
23348,cg01456011,-0.0000641,0.0000108,-5.913464967,8.84E-09,loss,yes,-0.00000215,0.0000184,-0.116918781,0.907000125,neg,ns,-0.015492217,0.005395,-2.871587969,0.004365501,neg,ns,2.359965941,0.000301874,0.000185534,1.62706026,0.104740271,pos,ns,0.732520666,Pgs1,Pgs1_Exon,11,118014616,118014665,118014616,118014617,50,+,CGCTGATTGGCTCTCCTAATTTTGGGTACAGGTCAGTTCACCGGGACCTG,"Exon (Pgs1-203/Pgs1, exon 8 of 10)",11,117986292,118024011,37720,1,Pgs1-203,28324,Pgs1-203;Pgs1-201;Pgs1-202;Pgs1-204,Pgs1;Pgs1;Pgs1;Pgs1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,74451,ENSMUSG00000017715,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5223,cg21421628,-0.0000846,0.00000982,-8.614866502,3.62E-16,loss,yes,0.00000195,0.0000167,0.116854456,0.907051057,pos,ns,-0.020363519,0.004887232,-4.166677644,0.0000401,neg,ns,4.396564121,0.000417502,0.000168071,2.484072848,0.013516838,pos,ns,0.782662208,Lrrc18,Lrrc18_Intergenic_upstream,14,32950798,32950847,32950846,32950847,50,-,GAACGGCTCACTAGAGTGGAAAATAGTCCTCATATATCTAGCTGAAGACG,Distal Intergenic,14,32991382,33015291,23910,1,Lrrc18-201,-40584,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,67580,ENSMUSG00000041673,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19772,cg17571329,0.00000303,0.00000403,0.752713481,0.452193307,gain,ns,-0.000000799,0.00000685,-0.116746446,0.90713658,neg,ns,0.001488142,0.002005744,0.741939946,0.458685467,pos,ns,0.33848502,-0.0000732,0.000069,-1.061236585,0.289408473,neg,ns,0.908609302,Atp6v0a1,Atp6v0a1_Exon,11,101048453,101048502,101048453,101048454,50,-,CGGACCGACAGAGGAGGATGCTGAGATTATTCAGCATGACCAGCTCTCCA,"Exon (Atp6v0a1-203/Atp6v0a1, exon 18 of 21)",11,101009452,101062424,52973,1,Atp6v0a1-203,39001,Atp6v0a1-209;Atp6v0a1-203;Atp6v0a1-201;Atp6v0a1-210;Atp6v0a1-202;Atp6v0a1-207;Atp6v0a1-204,Atp6v0a1;Atp6v0a1;Atp6v0a1;Atp6v0a1;Atp6v0a1;Atp6v0a1;Atp6v0a1,39001;0;0;0;0;0;4638,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,11975,ENSMUSG00000019302,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3530,cg21007009,0.00000129,0.00000234,0.552562137,0.580961464,gain,ns,-0.000000463,0.00000397,-0.116577478,0.907270372,neg,ns,-0.002715749,0.001163011,-2.335102048,0.020175981,neg,ns,1.69516534,0.00007,0.00004,1.749847541,0.081134056,pos,ns,0.923426962,Abca3,Abca3_Exon,17,24397298,24397347,24397346,24397347,50,+,TGCCAGCAATTCTGGGCCATGTTCCTGAAGAAGGCCGCATACAGCTGGCG,"Exon (Abca3-204/Abca3, exon 20 of 20)",17,24351950,24397783,45834,1,Abca3-204,45348,Abca3-204;Abca3-201;Abca3-202;Abca3-206;Abca3-203,Abca3;Abca3;Abca3;Abca3;Abca3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,27410,ENSMUSG00000024130,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26605,cg09311277,0.00000263,0.00000115,2.293748006,0.022473671,gain,ns,-0.000000227,0.00000195,-0.11652739,0.907310033,neg,ns,0.000299391,0.000571522,0.523848296,0.600758363,pos,ns,0.221300175,0.00000853,0.0000197,0.433985874,0.664600578,pos,ns,0.975855315,Pex14,Pex14_Exon,4,148984381,148984430,148984429,148984430,50,+,CATTCAATTTCCTTAATTTATCCTTGAGTTTATTGCTGCTTTTGAAGTCG,"Exon (Gm17029-202/Gm17029-202, exon 3 of 3)",4,148960535,149099876,139342,2,Pex14-201,115446,Pex14-201;Pex14-202;Pex14-205;Pex14-203,Pex14;Pex14;Pex14;Pex14,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,48,56273,ENSMUSG00000028975,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25748,cg06431538,-0.000018,0.00000633,-2.848562219,0.004685371,loss,ns,-0.00000125,0.0000108,-0.116385572,0.90742233,neg,ns,0.002058382,0.003150572,0.653335979,0.514023975,pos,ns,0.289016624,-0.000219753,0.000108348,-2.028219427,0.043392624,neg,ns,0.924847715,Rergl,Rergl_Intergenic_downstream,6,139293923,139293972,139293971,139293972,50,-,TTATACAGACACCTTGACGATGGGCAAAGTTGTCATTTTGCCCTTTATCG,Distal Intergenic,6,139492973,139501976,9004,2,Rergl-201,208053,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,5,632971,ENSMUSG00000092164,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25086,cg24420398,0.00000125,0.00000255,0.489266995,0.624998682,gain,ns,-0.000000504,0.00000434,-0.116229014,0.9075463,neg,ns,-0.000806791,0.001270937,-0.634800448,0.526026793,neg,ns,0.278992134,0.0000637,0.0000437,1.457313419,0.146042098,pos,ns,0.943604375,Nfasc,Nfasc_Exon,1,132620951,132621000,132620951,132620952,50,-,CGGATGCTGCCCATCTTGTTGGAGGCCAGGCAGAAATACTCCCCGGAGTC,"Exon (Nfasc-202/Nfasc, exon 10 of 30)",1,132564690,132741757,177068,2,Nfasc-202,120757,Nfasc-202;Nfasc-201;Nfasc-207;Nfasc-203;Nfasc-205;Nfasc-208;Nfasc-210,Nfasc;Nfasc;Nfasc;Nfasc;Nfasc;Nfasc;Nfasc,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,10,269116,ENSMUSG00000026442,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21552,cg04440476,-0.0000196,0.00000734,-2.672713783,0.007922197,loss,ns,-0.00000145,0.0000125,-0.116197508,0.907571248,neg,ns,-0.006865354,0.00365168,-1.880053666,0.061038341,neg,ns,1.214397277,-0.000173176,0.000125581,-1.37899765,0.168889609,neg,ns,0.58945272,Zfhx3,Zfhx3_Intron,8,108264841,108264890,108264841,108264842,50,+,CGACCCTTCTAGCCTTGGGTAATGACCTTGAAAGAATATATCAGCCCATG,"Intron (Zfhx3-204/Zfhx3, intron 2 of 15)",8,107942644,108961630,1018987,1,Zfhx3-204,322197,Zfhx3-204;Zfhx3-207,Zfhx3;Zfhx3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,114,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23635,cg26743515,-0.0000605,0.00000888,-6.816047143,4.89E-11,loss,yes,0.00000175,0.0000151,0.116176277,0.90758806,pos,ns,-0.015011449,0.004418764,-3.397205185,0.000769599,neg,ns,3.113735366,0.000276274,0.000151961,1.818061325,0.070019813,pos,ns,0.796437193,Tbx3,Tbx3_Intergenic_upstream,5,119411168,119411217,119411168,119411169,50,-,CGTATTAATTGGGACATCAAGTCGGATTTCATTCCAGGCACTTCCTTCCG,Distal Intergenic,5,119670669,119684561,13893,1,Tbx3-202,-259501,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,7,21386,ENSMUSG00000018604,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11512,cg12795533,-0.00000083,0.00000057,-1.454965995,0.146690496,loss,ns,0.000000112,0.000000969,0.115988573,0.907736698,pos,ns,0.00059933,0.00028383,2.111578694,0.035522592,pos,ns,1.449495356,-0.0000175,0.00000976,-1.792632947,0.074006526,neg,ns,0.014757161,Siah2,Siah2_Exon,3,58691464,58691513,58691464,58691465,50,+,CGCCCCTGCACGTCGGGCAGCAGCTCAACTTCTGGCGGCATTGGTTACAC,Promoter (<=1kb),3,58674938,58692400,17463,2,Siah2-201,887,Siah2-201,Siah2,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,20439,ENSMUSG00000036432,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
11738,cg02973372,-0.000000765,0.00000227,-0.337705935,0.735813363,loss,ns,0.000000446,0.00000385,0.115943736,0.907772203,pos,ns,-0.001555186,0.001127778,-1.378982357,0.16889432,neg,ns,0.772384956,0.0000413,0.0000388,1.066072042,0.287220652,pos,ns,0.952155925,Cdh23,Cdh23_Exon,10,60317801,60317850,60317849,60317850,50,-,CCAGCAGGGTGTAGGTGACCAGCCCATTAAGGCCCTTGTCAGGGTCCACG,"Exon (Cdh23-201/Cdh23, exon 47 of 67)",10,60302748,60657333,354586,2,Cdh23-201,339483,Cdh23-201;Cdh23-203;Cdh23-202;Cdh23-204;Cdh23-205;Cdh23-212;Cdh23-214;Cdh23-209;Cdh23-210,Cdh23;Cdh23;Cdh23;Cdh23;Cdh23;Cdh23;Cdh23;Cdh23;Cdh23,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,14,22295,ENSMUSG00000012819,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22277,cg01434508,-0.0000546,0.0000114,-4.806457248,0.0000024,loss,ns,0.00000224,0.0000193,0.115845799,0.907849758,pos,ns,-0.017855039,0.005657446,-3.156024901,0.001756483,neg,ns,2.755355985,0.000569565,0.000194559,2.927464465,0.003670293,pos,ns,0.825948712,Tead1,Tead1_Exon,7,112841954,112842003,112841954,112841955,50,+,CGTCTGGCTTGCCCACTTGTAGGGGGCTTTTCATCTCCATGGTTACAGGC,"Exon (Tead1-209/Tead1, exon 3 of 3)",7,112679318,112899459,220142,1,Tead1-203,162636,Tead1-203;Tead1-216;Tead1-217;Tead1-201;Tead1-204;Tead1-214;Tead1-206;Tead1-202;Tead1-211;Tead1-207;Tead1-210;Tead1-212;Tead1-208;Tead1-209;Tead1-215,Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,16,21676,ENSMUSG00000055320,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10213,cg20516274,0.000023,0.00000315,7.300786103,2.42E-12,gain,yes,0.000000619,0.00000535,0.115833157,0.90785977,pos,ns,0.0016319,0.00156638,1.041829355,0.298302609,pos,ns,0.525342948,0.0000268,0.0000539,0.497193174,0.619405274,pos,ns,0.017571964,Hoxa11,Hoxa11_Exon,6,52245353,52245402,52245401,52245402,50,+,CTGCGGGGGTGGGGTGGTGGTAGACGTTGGCCGAGCTCTTGGCCAGCACG,Promoter (<=1kb),6,52242106,52245810,3705,2,Hoxa11-201,408,Hoxa10-201;Hoxa10-204;Hoxa11-201;Hoxa11-202,Hoxa10;Hoxa10;Hoxa11;Hoxa11,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,15,18,15396,ENSMUSG00000038210,mapped to different genes,6,52244948,52245549,602,*,602,70,0.674418605,1.022616968,0.11627907,2.62E-58,CpGisland,TRUE,NA,NRS
15808,cg07332354,0.00000497,0.00000364,1.364081484,0.173531459,gain,ns,-0.000000716,0.00000619,-0.115769455,0.907910215,neg,ns,-0.000821429,0.00181267,-0.45315963,0.650750818,neg,ns,0.186585278,0.0000749,0.0000623,1.201556091,0.230452703,pos,ns,0.040454931,Mef2c,Mef2c_Intron,13,83524027,83524076,83524027,83524028,50,+,CGTAAAACTAAAATTAGCAAAATGTCAGGAATGGAAAGATTGATTCACCA,"Intron (Mef2c-218/Mef2c, intron 2 of 10)",13,83504034,83663343,159310,1,Mef2c-218,19993,Mef2c-218;Mef2c-228;Mef2c-221;Mef2c-229;Mef2c-201;Mef2c-202;Mef2c-207;Mef2c-231;Mef2c-222;Mef2c-223;Mef2c-209;Mef2c-227;Mef2c-217;Mef2c-213;Mef2c-214;Mef2c-215;Mef2c-226,Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,41,17260,ENSMUSG00000005583,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6061,cg15012573,-0.0000708,0.00000713,-9.93632709,2.23E-20,loss,yes,0.0000014,0.0000121,0.115721093,0.907948513,pos,ns,-0.003474686,0.003546997,-0.979613406,0.328040857,neg,ns,0.484072062,0.000160625,0.000121981,1.31680324,0.188877202,pos,ns,0.914282158,Dcun1d1,Dcun1d1_fiveUTR,3,35921122,35921171,35921170,35921171,50,+,TTCACTAGATTGTGTGAAGATCATAAACTGACGAACTTTATCCTTCTGCG,5' UTR,3,35892105,35932334,40230,2,Dcun1d1-203,11163,Dcun1d1-203;Dcun1d1-201;Dcun1d1-212;Dcun1d1-209;Dcun1d1-210;Dcun1d1-214;Dcun1d1-202;Dcun1d1-207;Dcun1d1-204;Dcun1d1-211;Dcun1d1-208;Dcun1d1-213,Dcun1d1;Dcun1d1;Dcun1d1;Dcun1d1;Dcun1d1;Dcun1d1;Dcun1d1;Dcun1d1;Dcun1d1;Dcun1d1;Dcun1d1;Dcun1d1,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,3,114893,ENSMUSG00000027708,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8536,cg14877465,-0.0000199,0.00000659,-3.018304097,0.00275287,loss,ns,0.0000013,0.0000112,0.115700874,0.907964524,pos,ns,0.006372034,0.003281665,1.941707735,0.053078271,pos,ns,1.275083231,-0.000737362,0.000112856,-6.533643508,2.63E-10,neg,yes,0.166089735,Btrc,Btrc_Intron,19,45311278,45311327,45311326,45311327,50,-,TCTTCCTTAGCTGTGATCTCCAAATTGTTCCTTTTATTGCATTTGTCACG,"Intron (Gm28578-208/Gm28578-208, intron 4 of 6)",19,45363734,45507736,144003,1,Btrc-204,-52456,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,63,98,12234,ENSMUSG00000025217,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
11603,cg04987336,-0.0000134,0.0000126,-1.066422527,0.287062511,loss,ns,-0.00000247,0.0000214,-0.115634897,0.908016773,neg,ns,0.008036417,0.006259479,1.283879601,0.200142851,pos,ns,0.698659917,-0.000491458,0.000215263,-2.2830596,0.023103492,neg,ns,0.715383172,Mcu,Mcu_Exon,10,59451204,59451253,59451252,59451253,50,+,ACCTGAGCAATTGCATCCTTGAGTTGATTGTATTTCTCTAGGTCAAAACG,"Exon (Mcu-202/Mcu, exon 7 of 8)",10,59446984,59616692,169709,2,Mcu-202,165439,Mcu-202;Mcu-201,Mcu;Mcu,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,3,215999,ENSMUSG00000009647,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13318,cg22750057,0.000131583,0.0000186,7.063699403,1.07E-11,gain,yes,-0.00000365,0.0000316,-0.115393635,0.908207833,neg,ns,0.029162305,0.009271372,3.14541421,0.001819387,pos,ns,2.740075032,-0.000612208,0.000318842,-1.920100406,0.055762613,neg,ns,0.244190714,Egr3,Egr3_Exon,14,70079611,70079660,70079611,70079612,50,-,CGAGCTGACCCGGCACCTGCGCATCCACACGGGCCACAAGCCCTTCCAGT,"Exon (Egr3-201/Egr3, exon 3 of 3)",14,70077203,70079955,2753,1,Egr3-201,2408,Egr3-201;Egr3-204;Egr3-203;Egr3-202,Egr3;Egr3;Egr3;Egr3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,19,13655,ENSMUSG00000033730,conserved gene but different region,14,70079463,70079912,450,*,450,43,0.666666667,0.886638563,0.095555556,4.86E-32,CpGisland,TRUE,U13,Hc-P
10880,cg11015424,0.0000018,0.00000184,0.975915827,0.329867106,gain,ns,-0.000000361,0.00000313,-0.115324769,0.908262371,neg,ns,0.000441575,0.000917073,0.481504822,0.63049747,pos,ns,0.200316652,-0.000027,0.0000315,-0.857539328,0.391809364,neg,ns,0.957003219,Ralgapa1,Ralgapa1_Exon,12,55721496,55721545,55721544,55721545,50,-,AAACATTTGCCTTCGGCTTCGAAAGAGCATGTACAACAGTTTTATAAACG,"Exon (Ralgapa1-212/Ralgapa1, exon 17 of 40)",12,55602896,55820767,217872,2,Ralgapa1-211,99222,Ralgapa1-211;Ralgapa1-212;Ralgapa1-201;Ralgapa1-202;Ralgapa1-204;Ralgapa1-207;Ralgapa1-208,Ralgapa1;Ralgapa1;Ralgapa1;Ralgapa1;Ralgapa1;Ralgapa1;Ralgapa1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,15,56784,ENSMUSG00000021027,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9393,cg02431759,-0.0000251,0.00000706,-3.558556686,0.000431274,loss,ns,0.00000138,0.000012,0.115198074,0.908362707,pos,ns,-0.008021229,0.003512019,-2.283936868,0.023051224,neg,ns,1.637306003,0.000244234,0.000120778,2.022171424,0.04401719,pos,ns,0.87791075,Otx2,Otx2_Intergenic_downstream,14,48607195,48607244,48607243,48607244,50,+,GTTACCCATCTCCCAACAGCTACCAAATGGACTAGTAATTGTAAGGCTCG,Distal Intergenic,14,48658916,48661932,3017,2,Otx2-206,54688,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,15,18424,ENSMUSG00000021848,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6834,cg12764921,0.0000219,0.00000385,5.693836437,2.88E-08,gain,yes,-0.000000754,0.00000655,-0.115135257,0.908412455,neg,ns,0.002809215,0.001917923,1.464716958,0.144011547,pos,ns,0.841602684,-0.0000358,0.000066,-0.543060735,0.587478235,neg,ns,0.057270206,Arhgap31,Arhgap31_fiveUTR,16,38712653,38712702,38712701,38712702,50,+,CTTAGCACCCTTGTTCTTCATGAGTTAGTCCCAAAGAGGCTGCCCCTCCG,Promoter (<=1kb),16,38598340,38713274,114935,2,Arhgap31-201,572,Arhgap31-201;Arhgap31-202;Arhgap31-203,Arhgap31;Arhgap31;Arhgap31,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,1,12549,ENSMUSG00000022799,conserved gene and region,16,38712701,38713097,397,*,397,46,0.712846348,0.912096694,0.115869018,2.03E-38,CpGisland,TRUE,U1,Pr-A
8982,cg05781984,0.0000485,0.00000834,5.814463564,1.51E-08,gain,yes,0.00000163,0.0000142,0.115100603,0.908439899,pos,ns,0.010199211,0.004150153,2.457550611,0.014536012,pos,ns,1.837554715,0.000223906,0.000142723,1.568810443,0.117712245,pos,ns,0.068364251,Ttbk1,Ttbk1_threeUTR,17,46460722,46460771,46460770,46460771,50,+,GCCTAGGTCTTGTGGGTGAACCGGGCCCACACCTGCTGCAGCTGGGACCG,3' UTR,17,46442448,46487675,45228,2,Ttbk1-201,26904,Ttbk1-201;Ttbk1-203,Ttbk1;Ttbk1,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,7,106763,ENSMUSG00000015599,conserved gene but different region,17,46460743,46461013,271,*,271,31,0.726937269,0.897542735,0.114391144,7.63E-26,CpGisland,TRUE,U13,Hc-P
18322,cg21827311,0.0000135,0.00000267,5.059328819,0.000000722,gain,yes,-0.000000522,0.00000453,-0.115020559,0.908503291,neg,ns,0.003327229,0.001328369,2.504747706,0.012766895,pos,ns,1.893914727,-0.0000887,0.0000457,-1.940645638,0.053207636,neg,ns,0.08668363,Gm48316,Gm48316_Intergenic_upstream,13,94710261,94710310,94710309,94710310,50,+,TTACAAACGCTGATTAAACTGCAAATTATCCAGCAGCGGCCCTGTTCCCG,Distal Intergenic,13,94752270,94752593,324,1,Gm48316-201,-41960,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,36,42,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
16012,cg12330538,-0.00000315,0.00000165,-1.907670945,0.05735761,loss,ns,0.000000323,0.00000281,0.115010395,0.908511341,pos,ns,0.000477401,0.000822652,0.580319613,0.562120682,pos,ns,0.250170435,-0.00000194,0.0000283,-0.068527677,0.945409768,neg,ns,0.060161471,Elmsan1,Elmsan1_fiveUTR,12,84193813,84193862,84193861,84193862,50,+,ACCCCCAGTCCTGCGATGCAGTGTCAGGATTGCACGGCTCTGACTCATCG,5' UTR,12,84149176,84218881,69706,2,Elmsan1-201,25019,Elmsan1-201;Elmsan1-202;Elmsan1-205,Elmsan1;Elmsan1;Elmsan1,0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,4,238317,ENSMUSG00000042507,conserved gene and region,12,84192979,84193862,884,*,884,106,0.714932127,0.950046132,0.119909502,1.38E-89,CpGisland,TRUE,U1,Pr-A
2569,cg14234063,-0.0000193,0.00000937,-2.055484832,0.040669577,loss,ns,-0.00000183,0.0000159,-0.114907484,0.908592844,neg,ns,0.002407793,0.004665409,0.516094641,0.606156223,pos,ns,0.217415432,-0.000264044,0.000160443,-1.645720164,0.100834848,neg,ns,0.617568245,Usp54,Usp54_Exon,14,20576976,20577025,20577024,20577025,50,+,TGCTTCCTTTTGTCCTTACTAAAGATACTGTCAATATTCAGAGATTCTCG,"Exon (Usp54-202/Usp54, exon 12 of 21)",14,20548912,20618354,69443,2,Usp54-202,41329,Usp54-202;Usp54-201;Usp54-203;Usp54-205,Usp54;Usp54;Usp54;Usp54,0;0;9035;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,9,78787,ENSMUSG00000034235,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
111,cg04752582,-0.000026,0.00000787,-3.31000635,0.001042976,loss,ns,-0.00000153,0.0000134,-0.114757724,0.908711452,neg,ns,-0.010564316,0.003916694,-2.697253334,0.007373907,neg,ns,2.132302371,0.000484285,0.000134695,3.595425404,0.000376677,pos,ns,0.797499507,Ncoa1,Ncoa1_threeUTR,12,4249858,4249907,4249906,4249907,50,+,CACCACAGAGAAGAACTCTTCTGTCTTCTTGTCCTACAAAAAGAAAATCG,3' UTR,12,4247362,4477182,229821,2,Ncoa1-201,227275,Ncoa1-201;Ncoa1-209;Ncoa1-207;Ncoa1-203;Ncoa1-205,Ncoa1;Ncoa1;Ncoa1;Ncoa1;Ncoa1,0;0;0;0;25040,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,3,17977,ENSMUSG00000020647,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24116,cg06687107,0.00000917,0.00000494,1.856467634,0.064335525,gain,ns,0.000000963,0.00000839,0.114721938,0.908739794,pos,ns,-0.000276427,0.002458286,-0.112447038,0.910541739,neg,ns,0.040700141,-0.0000525,0.0000845,-0.621547936,0.534695962,neg,ns,0.074671254,Ppm1h,Ppm1h_fiveUTR,10,122679174,122679223,122679174,122679175,50,+,CGCCGGAGTAATATGCTCACTCGAGTGAAATCTGCCGTGGCCAATTTCAT,Promoter (<=1kb),10,122678762,122880333,201572,1,Ppm1h-207,412,Ppm1h-207;Ppm1h-206;Ppm1h-201,Ppm1h;Ppm1h;Ppm1h,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,2,319468,ENSMUSG00000034613,conserved gene and region,10,122678630,122679561,932,*,932,103,0.728540773,0.83796854,0.110515022,5.92E-83,CpGisland,TRUE,U1,Pr-A
13239,cg01553943,0.00000533,0.00000369,1.443336228,0.149935517,gain,ns,-0.000000719,0.00000627,-0.114611758,0.908827057,neg,ns,0.000435144,0.001837591,0.236801467,0.812967214,pos,ns,0.089926969,-0.0000231,0.0000632,-0.365035348,0.715333934,neg,ns,0.889458898,Nlgn2,Nlgn2_Intron,11,69830621,69830670,69830621,69830622,50,-,CGGGAACACAAAACAGAGAAAAAAGGACAATTTTGTGGGGAAAGATGGGG,"Intron (Nlgn2-201/Nlgn2, intron 1 of 6)",11,69823122,69834849,11728,2,Nlgn2-201,4179,Nlgn2-201;Nlgn2-202;Nlgn2-203;Nlgn2-204,Nlgn2;Nlgn2;Nlgn2;Nlgn2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,17,216856,ENSMUSG00000051790,conserved gene and region,11,69830545,69830622,78,*,78,8,0.512820513,1.575757576,0.102564103,0.00000181,CpGisland,TRUE,U11,Tr-P
22507,cg11443263,-0.00000218,0.00000206,-1.059616411,0.290144043,loss,ns,-0.000000401,0.0000035,-0.114603016,0.90883398,neg,ns,-0.000544134,0.001025431,-0.530639575,0.596048489,neg,ns,0.224718409,0.0000419,0.0000353,1.187912694,0.235777142,pos,ns,0.944862865,Rps4l-ps,Rps4l-ps_Intergenic_downstream,7,114896974,114897023,114897022,114897023,50,+,GTTGCTCTGAAAAATCAAGCCCTCACAGTTCTCGCTGGGGAGGCAGCGCG,Distal Intergenic,7,114926959,114927726,768,2,Rps4l-ps-201,30703,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,13,19,627967,NA,mapped to different genes,7,114896968,114897083,116,*,116,9,0.50862069,1.202764977,0.077586207,0.00000318,CpGisland,TRUE,U15,NS
3887,cg24529117,-0.0000477,0.0000115,-4.153809735,0.0000423,loss,ns,0.00000223,0.0000195,0.114578893,0.908853086,pos,ns,-0.00249412,0.005710384,-0.436769199,0.662582804,neg,ns,0.17875984,0.0000258,0.00019638,0.131464541,0.895493114,pos,ns,0.482683199,Celf4,Celf4_Intron,18,25685171,25685220,25685171,25685172,50,+,CGGGATAAAAGGCCCTTGTCATTGTGAAGTGAAGGAAGTACAATTTCCTG,"Intron (Celf4-202/Celf4, intron 1 of 12)",18,25477632,25753983,276352,2,Celf4-202,68763,Celf4-202;Celf4-201;Celf4-203;Celf4-207;Celf4-206;Celf4-209;Celf4-205,Celf4;Celf4;Celf4;Celf4;Celf4;Celf4;Celf4,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,59,108013,ENSMUSG00000024268,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7429,cg12089282,0.000136159,0.0000128,10.63633958,9.91E-23,gain,yes,-0.00000249,0.0000217,-0.114539804,0.908884044,neg,ns,0.013668512,0.00637134,2.145311931,0.032704533,pos,ns,1.485392046,0.00000668,0.00021911,0.030474891,0.975707928,pos,ns,0.322727128,Ostm1,Ostm1_Intron,10,42631119,42631168,42631119,42631120,50,+,CGGCCCATTACATTTACAGCACGTCGCCCTTTAATTGGTGTAACACGCTG,"Intron (Ostm1-202/Ostm1, intron 2 of 5)",10,42583835,42698323,114489,1,Ostm1-202,47284,Ostm1-202;Ostm1-203,Ostm1;Ostm1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,21,22,14628,ENSMUSG00000038280,conserved gene and region,10,42631039,42631215,177,*,177,12,0.559322034,0.867647059,0.06779661,0.000000157,CpGisland,TRUE,U13,Hc-P
14448,cg26089573,-0.00000108,0.000000448,-2.410790729,0.016499577,loss,ns,-8.71E-08,0.000000761,-0.114433798,0.908968003,neg,ns,0.0000283,0.000223035,0.126981602,0.899037284,pos,ns,0.046222297,-0.0000162,0.00000767,-2.115850943,0.03515455,neg,ns,0.008987407,Ywhae,Ywhae_fiveUTR,11,75732848,75732897,75732896,75732897,50,+,CGCGCCAGTTGCCAGGGAGCGGTTGCCATAGAGCTGAGCAGTTGTCCGCG,Promoter (<=1kb),11,75732869,75765845,32977,1,Ywhae-201,0,Ywhae-201;Ywhae-203;Ywhae-204;Ywhae-202,Ywhae;Ywhae;Ywhae;Ywhae,0;0;0;-251,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,9,9,22627,ENSMUSG00000020849,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19316,cg27596044,-0.0000885,0.0000069,-12.8334685,1.58E-30,loss,yes,-0.00000134,0.0000117,-0.114430257,0.908970808,neg,ns,0.021407675,0.003434068,6.233910389,1.49E-09,pos,ns,8.828185181,-0.000379426,0.000118097,-3.212826085,0.001452594,neg,ns,0.605188831,Rara,Rara_Intron,11,98969290,98969339,98969338,98969339,50,+,AGCTGAGCAGCTGCCATTTCAATAGAATTAAAGCTTCCGAATGATAAACG,"Intron (Rara-203/Rara, intron 4 of 8)",11,98927818,98974162,46345,1,Rara-203,41472,Rara-203;Rara-204;Rara-201;Rara-207;Rara-202,Rara;Rara;Rara;Rara;Rara,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,12,19401,ENSMUSG00000037992,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
27459,cg15690175,0.0000576,0.0000162,3.563441617,0.000423636,gain,ns,-0.00000314,0.0000275,-0.114408749,0.908987843,neg,ns,0.043218506,0.008043373,5.373181754,0.000000152,pos,ns,6.817435594,-0.000884253,0.000276611,-3.196740929,0.001533296,neg,ns,0.271125408,Pbx1,Pbx1_Intron,1,168288455,168288504,168288455,168288456,50,-,CGAACAGAATAATCCGGACAGTATCAGCTCAGAAACATATGGGCCACACA,"Intron (Pbx1-208/Pbx1, intron 2 of 7)",1,168119364,168432270,312907,2,Pbx1-208,143766,Pbx1-208;Pbx1-205;Pbx1-206;Pbx1-201;Pbx1-202;Pbx1-204,Pbx1;Pbx1;Pbx1;Pbx1;Pbx1;Pbx1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,84,18514,ENSMUSG00000052534,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
22290,cg15056231,0.00000911,0.00000475,1.915534377,0.056344176,gain,ns,0.000000924,0.00000808,0.114404523,0.908991189,pos,ns,0.000602272,0.002366597,0.254488811,0.799286677,pos,ns,0.097297426,0.0000431,0.0000814,0.529963831,0.596516371,pos,ns,0.864337354,Ryr3,Ryr3_Exon,2,113028578,113028627,113028626,113028627,50,-,TGGCTTCTGAAGTGGGTTCCAAGAAGCACAGGCGATTCCCAAGTCCCTCG,"Exon (Ryr3-210/Ryr3, exon 2 of 102)",2,112631355,113217087,585733,2,Ryr3-210,188460,Ryr3-210;Ryr3-211;Ryr3-201;Ryr3-202;Ryr3-204;Ryr3-207;Ryr3-208;Ryr3-203;Ryr3-209,Ryr3;Ryr3;Ryr3;Ryr3;Ryr3;Ryr3;Ryr3;Ryr3;Ryr3,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,5,20192,ENSMUSG00000057378,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7525,cg22652643,-0.00000543,0.00000534,-1.016419125,0.310222454,loss,ns,-0.00000104,0.00000907,-0.114169066,0.90917768,neg,ns,-0.006565712,0.002658503,-2.469702396,0.014060892,neg,ns,1.851987115,0.000195617,0.0000914,2.139628729,0.033165379,pos,ns,0.832963364,Scml4,Scml4_Intergenic_downstream,10,42995877,42995926,42995877,42995878,50,-,CGGGGTTGCTATGCAGATATACAATTTCTGAAAAGTTACACCCGGAAAAC,Distal Intergenic,10,42939881,42958721,18841,1,Scml4-205,56045,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,4,268297,ENSMUSG00000044770,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8122,cg15416233,0.0000237,0.00000319,7.421954688,1.12E-12,gain,yes,-0.000000618,0.00000542,-0.114161698,0.909183515,neg,ns,0.001862322,0.001587158,1.173368637,0.241548751,pos,ns,0.616995203,0.0000115,0.0000546,0.211571448,0.832580411,pos,ns,0.077363836,Pax2,Pax2_fiveUTR,19,44756587,44756636,44756635,44756636,50,-,GAGTGGTGGAATCTATTGCCTTTGTCTGACAAGTCATCCATCTCCCGGCG,Promoter (<=1kb),19,44756045,44837851,81807,1,Pax2-203,542,Pax2-203;Pax2-201;Pax2-202,Pax2;Pax2;Pax2,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,166,18504,ENSMUSG00000004231,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
18890,cg01961215,0.0000173,0.0000182,0.950156701,0.3427728,gain,ns,0.00000353,0.0000309,0.114027931,0.909289466,pos,ns,0.051002821,0.009059289,5.629892519,4.04E-08,pos,ns,7.393520313,-0.001616718,0.000311548,-5.189301987,0.000000382,neg,yes,0.398277215,Nfia,Nfia_Intron,4,97840374,97840423,97840422,97840423,50,-,TTTATTCTCTCCTCCTATCAGCTATTAGTGCCTAATCATATGGTCTATCG,"Intron (Nfia-208/Nfia, intron 2 of 3)",4,97772734,98000466,227733,1,Nfia-208,67640,Nfia-208;Nfia-202;Nfia-203;Nfia-205;Nfia-201;Nfia-204,Nfia;Nfia;Nfia;Nfia;Nfia;Nfia,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,44,18027,ENSMUSG00000028565,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18028,cg01080993,0.00000443,0.00000703,0.631134885,0.528417391,gain,ns,0.00000136,0.0000119,0.113933677,0.909364122,pos,ns,-0.0001969,0.003496669,-0.056310724,0.955130552,neg,ns,0.019937263,-0.000212704,0.00012025,-1.768848409,0.077902469,neg,ns,0.737794334,Pola1,Pola1_Intron,X,93317714,93317763,93317762,93317763,50,-,GCCCACTTTAAAAGCAATTCGCTGCTCATCACTGAAATCTGGCAGACACG,"Intron (Pola1-201/Pola1, intron 36 of 36)",20,93304767,93632155,327389,2,Pola1-201,314392,Pola1-201,Pola1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,59,62,18968,ENSMUSG00000006678,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12184,cg00595237,0.0000313,0.00000605,5.169530037,0.000000422,gain,yes,0.00000117,0.0000103,0.113759796,0.909501848,pos,ns,0.005154477,0.003008943,1.713052527,0.087702693,pos,ns,1.056987069,-0.000111477,0.000103477,-1.077305892,0.282181247,neg,ns,0.069901239,Gata4,Gata4_Intron,14,63246140,63246189,63246188,63246189,50,-,GTTAATAGAGCAATCACAGGGCCCTATTACCGCGTAAAAATAACCCATCG,"Intron (Gata4-204/Gata4, intron 1 of 1)",14,63241102,63271692,30591,2,Gata4-204,25503,Gata4-202;Gata4-201;Gata4-204;Gata4-205;Gata4-206,Gata4;Gata4;Gata4;Gata4;Gata4,-892;-869;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,14463,ENSMUSG00000021944,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
15056,cg03386560,0.000000922,0.00000401,0.229703442,0.818473708,gain,ns,0.000000775,0.00000682,0.113659538,0.909581261,pos,ns,0.001686359,0.001997998,0.844024593,0.399306503,pos,ns,0.398693617,-0.0000796,0.0000687,-1.158247805,0.247654451,neg,ns,0.929706814,Gm8345,Gm8345_Intergenic_downstream,13,78678268,78678317,78678268,78678269,50,-,CGATTAGAAAATGCACAAGTGGAGGCGTCAGCCGAGCATGCATTATTTAA,Distal Intergenic,13,78953088,78954792,1705,2,Gm8345-201,276524,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,13,666883,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18768,cg16044855,0.0000741,0.0000141,5.25811917,0.000000272,gain,yes,-0.00000272,0.0000239,-0.113605079,0.909624398,neg,ns,0.019797761,0.007009645,2.824360052,0.00504444,pos,ns,2.297187045,-0.000632474,0.000241061,-2.62370933,0.009128153,neg,ns,0.400456448,Npepps,Npepps_threeUTR,11,97242604,97242653,97242652,97242653,50,-,TCTAACGCAAATTTTCCTTGCTCTGCTTTGCCAACAGGAGTGTAAACACG,3' UTR,11,97205842,97280486,74645,2,Npepps-215,37833,Npepps-215;Npepps-219;Npepps-201;Npepps-214;Npepps-213;Npepps-208;Npepps-211;Npepps-209;Npepps-205;Npepps-216;Npepps-210,Npepps;Npepps;Npepps;Npepps;Npepps;Npepps;Npepps;Npepps;Npepps;Npepps;Npepps,0;0;0;0;0;0;0;0;0;0;37817,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,5,19155,ENSMUSG00000001441,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11443,cg11216567,0.00000243,0.00000545,0.446588563,0.655483964,gain,ns,-0.00000105,0.00000926,-0.113414255,0.909775551,neg,ns,0.00027274,0.002711442,0.100588374,0.919942249,pos,ns,0.036239435,-0.000158165,0.0000932,-1.696209227,0.090850156,neg,ns,0.881205386,Loxl1,Loxl1_Exon,9,58290788,58290837,58290788,58290789,50,-,CGACCTGTGTAGTGAATGTTGCATCTCACCACGTTGTTGGTGAAGTCAGA,"Exon (Loxl1-201/Loxl1, exon 6 of 7)",9,58287738,58313186,25449,2,Loxl1-201,22349,Loxl1-201,Loxl1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,16949,ENSMUSG00000032334,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4735,cg25567445,-0.00000173,0.00000472,-0.367747644,0.713312364,loss,ns,-0.000000908,0.00000801,-0.113257284,0.909899891,neg,ns,-0.002474939,0.002347937,-1.054090583,0.29266231,neg,ns,0.533633204,0.00000648,0.0000807,0.080234452,0.936102562,pos,ns,0.918842501,Mecom,Mecom_Intron,3,30349574,30349623,30349622,30349623,50,+,GTTAATTGCTCTCTCGTGGTGGCTCACTTTTAATTAAAAAGAACAGCTCG,"Intron (Mecom-212/Mecom, intron 1 of 15)",3,29951299,30509733,558435,2,Mecom-212,160110,Mecom-212;Mecom-213;Mecom-207;Mecom-208;Mecom-211;Mecom-209,Mecom;Mecom;Mecom;Mecom;Mecom;Mecom,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,80,14013,ENSMUSG00000027684,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
372,cg04414191,-0.00000106,0.00000827,-0.128003304,0.898229355,loss,ns,0.00000159,0.000014,0.113252391,0.909903767,pos,ns,0.005918785,0.004115802,1.438063816,0.151424667,pos,ns,0.819803373,-0.000188415,0.000141542,-1.331159913,0.184114528,neg,ns,0.828148581,Zfhx4,Zfhx4_Exon,3,5245286,5245335,5245334,5245335,50,+,TTCACCTCTGACAGCCTGGAGGCCCTAAGTGTGCATGTGAGCAGTGAGCG,"Exon (Zfhx4-203/Zfhx4, exon 3 of 11)",3,5218526,5413165,194640,1,Zfhx4-203,26760,Zfhx4-203;Zfhx4-202;Zfhx4-201;Zfhx4-204;Zfhx4-205,Zfhx4;Zfhx4;Zfhx4;Zfhx4;Zfhx4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,23,77,80892,ENSMUSG00000025255,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1784,cg19175169,-0.00000839,0.00000275,-3.054753104,0.002448016,loss,ns,-0.000000528,0.00000467,-0.113173219,0.909966481,neg,ns,-0.002086391,0.001367413,-1.525794343,0.128080656,neg,ns,0.892516456,0.0000376,0.000047,0.798614477,0.425125389,pos,ns,0.943685318,Foxp2,Foxp2_Intron,6,15193523,15193572,15193571,15193572,50,+,GAAACATGTCAAACACATGGCTAATGCCTCATGCTTCACTCATTCTTGCG,"Intron (Foxp2-207/Foxp2, intron 3 of 18)",6,14901349,15441977,540629,1,Foxp2-207,292174,Foxp2-207;Foxp2-213;Foxp2-208;Foxp2-211;Foxp2-217;Foxp2-203;Foxp2-216;Foxp2-205;Foxp2-204;Foxp2-201;Foxp2-210;Foxp2-214;Foxp2-212;Foxp2-209;Foxp2-202,Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,38,65,114142,ENSMUSG00000029563,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20339,cg27441225,0.0000268,0.00000296,9.043524204,1.70E-17,gain,yes,0.00000057,0.00000504,0.113108861,0.910017462,pos,ns,0.003435047,0.00147543,2.328167565,0.020546269,pos,ns,1.68726704,-0.0000572,0.0000507,-1.126879524,0.260664938,neg,ns,0.047719508,Hoxc5,Hoxc5_Exon,15,103009650,103009699,103009650,103009651,50,+,CGGGGGCCAGGACGTCCTCCCCAACGTCGCCCTCAATTCCACCGCCTATG,"Exon (Hoxc6-202/Hoxc6, exon 2 of 3)",15,102967443,103015676,48234,1,Hoxc5-202,42207,Hoxc5-202;Hoxc5-201;Hoxc6-202;Hoxc6-203;Hoxc6-201,Hoxc5;Hoxc5;Hoxc6;Hoxc6;Hoxc6,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,72,134,15424,ENSMUSG00000022485,mapped to different genes,15,103009647,103009812,166,*,166,14,0.602409639,0.948184415,0.084337349,5.77E-10,CpGisland,TRUE,U13,Hc-P
5005,cg16146904,-0.0000688,0.0000107,-6.448197011,4.34E-10,loss,yes,-0.00000205,0.0000181,-0.112945523,0.91014685,neg,ns,-0.015563019,0.00531371,-2.928842561,0.003654503,neg,ns,2.437171649,0.000419566,0.000182738,2.295998878,0.022342966,pos,ns,0.735814328,Ankrd28,Ankrd28_Exon,14,31780226,31780275,31780274,31780275,50,-,AATGCAGGAGATTCATCTTCTACCTCCTCCAAAACAACAATACACACTCG,Promoter (<=1kb),14,31698768,31780393,81626,2,Ankrd28-207,118,Ankrd28-207;Ankrd28-201;Ankrd28-204;Ankrd28-210;Ankrd28-209,Ankrd28;Ankrd28;Ankrd28;Ankrd28;Ankrd28,0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,5,105522,ENSMUSG00000014496,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1472,cg12881209,0.0000417,0.0000106,3.915909424,0.000110801,gain,ns,0.00000204,0.0000181,0.112875715,0.910202149,pos,ns,0.014436964,0.005294269,2.726903973,0.006757191,pos,ns,2.170233791,-0.000578725,0.000182069,-3.178594152,0.001629313,neg,ns,0.636238507,Sema3a,Sema3a_Exon,5,13125478,13125527,13125526,13125527,50,+,TAAACCACAGAGTCAAATAGCTCTAATAGAGATGAAGCCTGATAGATCCG,Promoter (<=1kb),5,13125492,13293728,168237,1,Sema3a-208,0,Gm10108-201;Sema3a-207;Sema3a-208;Sema3a-206,Gm10108;Sema3a;Sema3a;Sema3a,-3712;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,9,20346,ENSMUSG00000028883,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17373,cg11900069,0.0000745,0.0000122,6.099093748,3.17E-09,gain,yes,-0.00000234,0.0000208,-0.112746291,0.910304674,neg,ns,0.02035999,0.006082368,3.347379019,0.000916291,pos,ns,3.037966742,-0.000600629,0.000209172,-2.871457785,0.004367252,neg,ns,0.512931267,Gbx2,Gbx2_Intergenic_downstream,1,89925805,89925854,89925805,89925806,50,+,CGTGGGTCTCATTAATCAGCCAGCTGAGACGGCCTGGCTTGATTACAATT,Downstream (2-3kb),1,89927966,89929185,1220,2,Gbx2-202,3331,Gbx2-201;Gbx2-202,Gbx2;Gbx2,0;3331,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,5,13,14472,ENSMUSG00000034486,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
8692,cg26055520,-0.00000354,0.00000583,-0.608045488,0.543602511,loss,ns,0.00000112,0.0000099,0.11274273,0.910307495,pos,ns,0.002868213,0.002901591,0.988496739,0.323680334,pos,ns,0.489883686,-0.0000923,0.0000998,-0.925239682,0.355560931,neg,ns,0.884066793,Gm12163,Gm12163_Intergenic_upstream,11,45550530,45550579,45550578,45550579,50,-,CTTGGAGCTTTGTAAAACAAACACACACACCAGTTAATTGGGTTATTGCG,Distal Intergenic,11,45813604,45813992,389,1,Gm12163-201,-263074,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,3,100504338,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23004,cg21510683,0.00000282,0.00000836,0.336685269,0.736581977,gain,ns,0.0000016,0.0000142,0.112738693,0.910310694,pos,ns,-0.008097291,0.004161559,-1.945734948,0.052590147,neg,ns,1.279095612,0.000280695,0.000143116,1.96131652,0.050736936,pos,ns,0.830543958,Tmco5,Tmco5_Intergenic_upstream,2,116768729,116768778,116768729,116768730,50,-,CGAAAAGTGATGATTAGGAGAGAGAAAAGCAAAACGGAATGCTGTATGAA,Distal Intergenic,2,116878691,116892181,13491,1,Tmco5-202,-109962,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,14,67356,ENSMUSG00000027355,conserved gene and region,2,116768729,116768996,268,*,268,13,0.462686567,0.912280702,0.048507463,0.00000185,CpGisland,TRUE,U15,NS
12072,cg15197087,-0.00000198,0.0000015,-1.322187107,0.187080574,loss,ns,-0.000000286,0.00000254,-0.112689188,0.91034991,neg,ns,0.000292338,0.00074473,0.392542372,0.694927275,pos,ns,0.158060643,-0.0000019,0.0000256,-0.074149632,0.940939146,neg,ns,0.087714224,Ints6,Ints6_Exon,14,62760153,62760202,62760153,62760154,50,-,CGAGGGCTGTTACCTTGATAGCATAGGGCGGCTCTTCGAAAGTGACCAGC,Promoter (<=1kb),14,62676330,62761112,84783,2,Ints6-201,910,Ints6-201;Ints6-202;Ints6-206;Ints6-205;Ints6-204,Ints6;Ints6;Ints6;Ints6;Ints6,0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,6,18130,ENSMUSG00000035161,conserved gene but different region,14,62759906,62760190,285,*,285,26,0.70877193,0.819237148,0.09122807,4.95E-19,CpGisland,TRUE,U1,Pr-A
1335,cg03674256,-0.0000561,0.0000138,-4.068896383,0.00006,loss,ns,0.00000264,0.0000234,0.112558364,0.910453547,pos,ns,-0.008011109,0.006864869,-1.166971837,0.244118622,neg,ns,0.612399091,-0.000343204,0.000236082,-1.453746537,0.147028203,neg,ns,0.661965496,Cadps,Cadps_Intergenic_downstream,14,12372262,12372311,12372310,12372311,50,+,TAAAAACAGTTTGTTGGCCTTCTCTTCGTACAGGAGAAACATTTCTCTCG,Downstream (<1kb),14,12373653,12376943,3291,2,Cadps-205,4632,Cadps-210;Cadps-202;Cadps-203;Cadps-204;Cadps-201;Cadps-212;Cadps-205;Cadps-207;Cadps-208,Cadps;Cadps;Cadps;Cadps;Cadps;Cadps;Cadps;Cadps;Cadps,0;0;0;0;0;0;4632;4968;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,1,34,27062,ENSMUSG00000054423,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12697,cg04083403,-0.00000227,0.00000235,-0.96589159,0.334851331,loss,ns,-0.00000045,0.000004,-0.112454187,0.910536075,neg,ns,-0.000222513,0.001171078,-0.190007273,0.849427788,neg,ns,0.070873536,-0.0000732,0.0000403,-1.818519916,0.069949573,neg,ns,0.941176846,Gm6555,Gm6555_Intergenic_upstream,3,66746592,66746641,66746640,66746641,50,-,TTTCATTAGCTCGAACCTGTTGAGAGTATTCAGATTTCCATAGCAGGACG,Distal Intergenic,3,66882350,66883138,789,1,Gm6555-201,-135758,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,10,625115,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17760,cg10985916,0.00000133,0.00000111,1.191807583,0.234248289,gain,ns,-0.000000212,0.00000189,-0.112261962,0.910688358,neg,ns,0.000844533,0.00055422,1.523820793,0.128572949,pos,ns,0.890850394,-0.00000547,0.0000191,-0.287196778,0.774153529,neg,ns,0.969892591,Son,Son_Exon,16,91656288,91656337,91656336,91656337,50,+,TGGCAACTGTGGCGCTGGAGATCTCTGTTCAGTCTGTGGTGACAACATCG,"Exon (Son-203/Son, exon 3 of 12)",16,91647506,91679207,31702,1,Son-203,8782,Son-203;Son-204;Son-202;Son-208;Son-201;Son-205;Son-212,Son;Son;Son;Son;Son;Son;Son,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,31,20658,ENSMUSG00000022961,conserved gene and region,16,91656231,91656409,179,*,179,11,0.603351955,0.686780607,0.061452514,0.00000161,CpGisland,TRUE,U10,Tr-S
6624,cg16764258,0.00000659,0.0000023,2.862180256,0.004493708,gain,ns,-0.000000439,0.00000391,-0.112241533,0.910704542,neg,ns,-0.000228464,0.001145789,-0.199394776,0.842084669,neg,ns,0.074644239,0.0000562,0.0000394,1.425857081,0.15491578,pos,ns,0.951436022,Dennd1a,Dennd1a_Intron,2,37832389,37832438,37832437,37832438,50,-,ATGGTGGCGTACGCCCTTGTAATGATCAGCTCTGGTCGATGTGCTTACCG,"Intron (Dennd1a-201/Dennd1a, intron 19 of 21)",2,37798991,38287375,488385,2,Dennd1a-201,454937,Dennd1a-201;Dennd1a-206;Dennd1a-207,Dennd1a;Dennd1a;Dennd1a,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,46,227801,ENSMUSG00000035392,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20878,cg18467593,0.00000546,0.000000966,5.651205475,3.61E-08,gain,yes,-0.000000184,0.00000164,-0.112231996,0.910712097,neg,ns,0.000881585,0.000480594,1.834365528,0.067558048,pos,ns,1.170322906,0.00000757,0.0000165,0.457732035,0.647465624,pos,ns,0.016852067,Pax6,Pax6_Exon,2,105682241,105682290,105682241,105682242,50,+,CGGAAAGGGTCGTTTTATCACGGTCCCGTTTGTCGTGACGATGCAATTTC,"Exon (Pax6-221/Pax6, exon 1 of 2)",2,105668900,105697364,28465,1,Pax6-206,13341,Pax6-206;Pax6-207;Pax6-210;Pax6-214;Pax6-208;Pax6-202;Pax6-205;Pax6-225;Pax6-204;Pax6-201;Pax6-203;Pax6-224;Pax6-219;Pax6-221;Pax6-213;Pax6-211;Pax6-222;Pax6-212;Pax6-215;Pax6-223;Pax6-209;Pax6-216,Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,31,78,18508,ENSMUSG00000027168,conserved gene and region,2,105682176,105682419,244,*,244,18,0.524590164,1.074626866,0.073770492,1.12E-11,CpGisland,TRUE,NA,NRS
1384,cg17319890,-0.000000569,0.00000508,-0.112097811,0.910818403,loss,ns,-0.000000968,0.00000863,-0.112211103,0.910728649,neg,ns,-0.005210763,0.002527404,-2.061705411,0.040069126,neg,ns,1.397190132,-0.0000531,0.0000869,-0.611459476,0.54134357,neg,ns,0.878174868,Gm11847,Gm11847_Intergenic_downstream,4,12522654,12522703,12522654,12522655,50,-,CGCAAAGTTGATTAGGATGGATGGGAGCCTTCTAATGCCCTAAAAACATT,Distal Intergenic,4,12232833,12233951,1119,1,Gm11847-201,289870,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,8,545592,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15907,cg16064114,0.00000426,0.0000011,3.858061362,0.000139048,gain,ns,-0.00000021,0.00000188,-0.112124854,0.910796978,neg,ns,-0.000586091,0.000549969,-1.065680061,0.287397586,neg,ns,0.541516884,0.000032,0.0000189,1.694029908,0.091263987,pos,ns,0.980621083,Hnf1b,Hnf1b_Exon,11,83861874,83861923,83861874,83861875,50,+,CGGTTCAAATGGGGGCCCGCGTCCCAGCAAATCTTGTACCAGGCCTACGA,"Exon (Hnf1b-201/Hnf1b, exon 3 of 9)",11,83850855,83905819,54965,1,Hnf1b-201,11019,Hnf1b-201;Hnf1b-203;Hnf1b-205;Hnf1b-202,Hnf1b;Hnf1b;Hnf1b;Hnf1b,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,4,21410,ENSMUSG00000020679,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20544,cg12962778,-0.0000255,0.00000801,-3.180495612,0.001618997,loss,ns,-0.00000152,0.0000136,-0.112008255,0.910889352,neg,ns,-0.004419752,0.003987461,-1.108412479,0.268542919,neg,ns,0.570986295,-0.0000109,0.000137128,-0.079456587,0.936720727,neg,ns,0.588983275,Zfp385a,Zfp385a_fiveUTR,15,103333117,103333166,103333165,103333166,50,+,GGCAGGATCTGCTTGAGGTCCAGTGGGGGCTGCATGATCGGGGGCTGCCG,5' UTR,15,103313895,103334327,20433,2,Zfp385a-202,1161,Zfp385a-202;Zfp385a-201,Zfp385a;Zfp385a,0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,3,29813,ENSMUSG00000000552,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8351,cg15053735,0.00010821,0.0000121,8.931596603,3.81E-17,gain,yes,0.00000231,0.0000206,0.112004812,0.910892079,pos,ns,0.018155827,0.00602994,3.010946804,0.002818482,pos,ns,2.549984705,-0.00020303,0.000207369,-0.979074344,0.328306691,neg,ns,0.702731945,Zeb2,Zeb2_Intron,2,45038583,45038632,45038583,45038584,50,-,CGGGATAATTGATGTGTAGATTGCAGCATGAACAAATGCTTTGACTTGTT,"Intron (Zeb2-212/Zeb2, intron 3 of 10)",2,44983632,45117395,133764,2,Zeb2-212,78763,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-218;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21619,cg05391884,-0.0000133,0.00000749,-1.781873095,0.075748719,loss,ns,0.00000142,0.0000127,0.111951603,0.910934234,pos,ns,0.000456389,0.003727611,0.122434789,0.90263402,pos,ns,0.044488302,-0.0000436,0.000128192,-0.340205536,0.733932157,neg,ns,0.825212526,Zfhx3,Zfhx3_Intron,8,108594114,108594163,108594162,108594163,50,-,AAGCTAATGATATGTGTTTTGGCCGGGATCCCGTGCTTGGCATACAGCCG,"Intron (Zfhx3-204/Zfhx3, intron 4 of 15)",8,107942644,108961630,1018987,1,Zfhx3-204,651470,Zfhx3-204,Zfhx3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,114,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21043,cg05030744,0.0000287,0.00000359,7.99033153,2.67E-14,gain,yes,0.000000682,0.0000061,0.111813148,0.911043925,pos,ns,0.002666532,0.00178662,1.492500523,0.136584964,pos,ns,0.864597109,-0.0000292,0.0000614,-0.475533421,0.634741722,neg,ns,0.103153489,Glyctk,Glyctk_Exon,9,106148688,106148737,106148736,106148737,50,-,GCTCCTCGGGACAGTTCCCACACTGCAGTGCCTCTGGTGAGGAGACAGCG,"Exon (D030055H07Rik-201/D030055H07Rik-201, exon 1 of 7)",9,106155548,106157250,1703,2,Glyctk-205,8562,Glyctk-201;Glyctk-202,Glyctk;Glyctk,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,6,235582,ENSMUSG00000020258,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
12524,cg18600075,-0.0000364,0.00000646,-5.633190064,3.97E-08,loss,yes,-0.00000123,0.000011,-0.111746168,0.911096991,neg,ns,-0.000425748,0.00321424,-0.132456778,0.894708941,neg,ns,0.048318223,-0.000159919,0.000110537,-1.446743439,0.148979165,neg,ns,0.899246669,Gm13578,Gm13578_Intergenic_downstream,2,64863701,64863750,64863701,64863702,50,+,CGCCCATTTAACCGGAGGGGCCAAAACAGCTCTAAAATGGAGCATGTGAT,Distal Intergenic,2,64867999,64868588,590,2,Gm13578-201,4838,Gm13578-201,Gm13578,4838,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,10,667291,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27547,cg19766752,-0.0000175,0.00000648,-2.706976944,0.007166285,loss,ns,-0.00000123,0.000011,-0.111586154,0.911223765,neg,ns,-0.007921537,0.003223086,-2.457749185,0.014528135,neg,ns,1.837790119,-0.00000524,0.000110842,-0.047254739,0.962340629,neg,ns,0.851942051,Tshz2,Tshz2_Intron,2,169783165,169783214,169783165,169783166,50,+,CGGCATTCAATTTATTGACAGATGTTTGCTTGGATCTCTTTAAAATTACT,"Intron (Tshz2-202/Tshz2, intron 1 of 2)",2,169633013,169913093,280081,1,Tshz2-202,150152,Tshz2-202;Tshz2-201,Tshz2;Tshz2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,21,30,228911,ENSMUSG00000047907,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6547,cg12411019,-0.0000155,0.00000608,-2.550652415,0.0112326,loss,ns,0.00000115,0.0000103,0.111520262,0.91127597,pos,ns,-0.005484488,0.003025305,-1.812871143,0.070818829,neg,ns,1.149851256,0.000170672,0.00010404,1.640449789,0.101925908,pos,ns,0.808434384,Zfp536,Zfp536_Intron,7,37661027,37661076,37661027,37661028,50,-,CGGCTGCTGTGTGCCAGTTCACTGAACCATGGCTTGCTAAAGAGATTGCT,"Intron (Zfp536-202/Zfp536, intron 3 of 6)",7,37479104,37769624,290521,2,Zfp536-202,108548,Zfp536-202;Zfp536-201;Zfp536-203;Zfp536-206;Zfp536-209;Zfp536-208,Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,73,112,243937,ENSMUSG00000043456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12057,cg08309749,-0.0000175,0.00000469,-3.729319908,0.00022824,loss,ns,-0.000000888,0.00000797,-0.111486013,0.911303105,neg,ns,-0.003450049,0.002333961,-1.478194648,0.140370983,neg,ns,0.852722659,0.0000519,0.0000803,0.646570264,0.518388514,pos,ns,0.898378572,Efna5,Efna5_Exon,17,62613315,62613364,62613363,62613364,50,-,CCTGCTGGTTCTAATGAATTTTCTACTTTGTCGTTAACATCGAAAACACG,"Exon (Efna5-201/Efna5, exon 4 of 5)",17,62604184,62881317,277134,2,Efna5-201,267953,Efna5-201;Efna5-202,Efna5;Efna5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,21,13640,ENSMUSG00000048915,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7476,cg00036705,0.0000017,0.00000257,0.662678276,0.508029017,gain,ns,0.000000486,0.00000437,0.11142656,0.911350209,pos,ns,0.00403621,0.001278966,3.155839138,0.001757567,pos,ns,2.755088106,-0.000249257,0.000044,-5.667051875,3.32E-08,neg,yes,0.94468475,Pou3f3,Pou3f3_Intron,1,42741683,42741732,42741731,42741732,50,+,AATGTTAATCAGTCCAATATCAATATAATAAATTCCTGCAAATTGGAGCG,"Intron (Gm20646-201/Gm20646-201, intron 1 of 1)",1,42695768,42703176,7409,1,Pou3f3-201,45915,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,37,18993,ENSMUSG00000045515,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5537,cg08970491,-0.000045,0.0000177,-2.539725436,0.011582086,loss,ns,0.00000335,0.0000301,0.111422749,0.911353228,pos,ns,-0.005865715,0.008817943,-0.665202204,0.506415758,neg,ns,0.295492789,0.000300425,0.000303248,0.990689305,0.322609945,pos,ns,0.51527515,Hdac9,Hdac9_Intron,12,34220645,34220694,34220693,34220694,50,+,TCTGCGCCTTCTTCTCATTAAATTGCAGTTAACACCATGAAAGTGAAACG,"Intron (Hdac9-205/Hdac9, intron 18 of 24)",12,34047580,34528328,480749,2,Hdac9-205,307634,Hdac9-205;Hdac9-204;Hdac9-206;Hdac9-210;Hdac9-207,Hdac9;Hdac9;Hdac9;Hdac9;Hdac9,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,19,31,79221,ENSMUSG00000004698,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
963,cg11017075,0.00000612,0.00000342,1.79041164,0.07436347,gain,ns,0.000000646,0.00000581,0.111189121,0.911538332,pos,ns,0.002967648,0.001702646,1.742962197,0.082331745,pos,ns,1.084432678,-0.000164936,0.0000586,-2.816819254,0.005161321,neg,ns,0.919359035,Arfgef1,Arfgef1_Exon,1,10157895,10157944,10157943,10157944,50,-,TATACCTGAGGTCTATCAGACACATATTTTGCACAATGGCGAATAAGTCG,"Exon (Arfgef1-201/Arfgef1, exon 27 of 38)",1,10137571,10232670,95100,2,Arfgef1-201,74726,Arfgef1-201;Arfgef1-204;Arfgef1-205;Arfgef1-202,Arfgef1;Arfgef1;Arfgef1;Arfgef1,0;-3365;0;3362,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,211673,ENSMUSG00000067851,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15788,cg23558985,-0.000000761,0.00000663,-0.114794501,0.908682324,loss,ns,-0.00000125,0.0000113,-0.111171154,0.911552568,neg,ns,0.007879434,0.003299967,2.387731382,0.017551423,pos,ns,1.755687661,-0.000321816,0.000113486,-2.835744974,0.004872527,neg,ns,0.859885826,Mef2c,Mef2c_Intergenic_upstream,13,83461543,83461592,83461543,83461544,50,-,CGGTTTGAGAGGGAGTGCTATAAACACAAAGTAAATTAAATGGGATCTAC,Distal Intergenic,13,83504034,83663343,159310,1,Mef2c-218,-42491,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,41,17260,ENSMUSG00000005583,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3165,cg14415958,0.0000377,0.0000044,8.557422837,5.43E-16,gain,yes,-0.000000831,0.00000748,-0.111089254,0.911617459,neg,ns,0.004537609,0.002190942,2.07107668,0.039178823,pos,ns,1.406948618,-0.000021,0.0000753,-0.278723255,0.78064305,neg,ns,0.082214005,Nol4,Nol4_Promoter,18,23041781,23041830,23041829,23041830,50,-,CTGACGTCACGGGCAGAATTGTCCCATTTAGGGATCCCGGGGGCAGTGCG,Promoter (<=1kb),18,22693634,23041653,348020,2,Nol4-204,-177,Nol4-202;Nol4-204;Nol4-208;Nol4-206;Nol4-209,Nol4;Nol4;Nol4;Nol4;Nol4,0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,5,21,319211,ENSMUSG00000041923,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
22462,cg08605853,-0.0000298,0.00000665,-4.484357357,0.0000103,loss,ns,0.00000125,0.0000113,0.110866833,0.91179369,pos,ns,-0.001994656,0.003308751,-0.602842802,0.547054024,neg,ns,0.261969783,-0.000120204,0.000113788,-1.056385551,0.291614647,neg,ns,0.747857618,Gm12830,Gm12830_Intergenic_upstream,4,114712340,114712389,114712340,114712341,50,-,CGTAAAAATGAGATTAATTTTAATAAGGGCTTTCACCAAGCAGCAGACCC,Distal Intergenic,4,114821722,114856166,34445,1,Gm12830-201,-109382,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,12,26,433746,ENSMUSG00000055198,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5689,cg16957078,-0.000071,0.000013,-5.469237377,9.32E-08,loss,yes,-0.00000244,0.0000221,-0.110715512,0.911913589,neg,ns,0.031433623,0.006460068,4.86583473,0.00000182,pos,ns,5.740594996,-0.00253359,0.000222161,-11.40428623,2.16E-25,neg,yes,0.607953644,Ldb3,Ldb3_Exon,14,34561834,34561883,34561834,34561835,50,+,CGCAATTTGGCAAAACGTGGGCTGTTACGTTCCGTTTCAAACCTTTCCCT,"Exon (Ldb3-207/Ldb3, exon 10 of 10)",14,34526603,34588664,62062,2,Ldb3-201,26781,Ldb3-201;Ldb3-205;Ldb3-202;Ldb3-204;Ldb3-208;Ldb3-207;Ldb3-203,Ldb3;Ldb3;Ldb3;Ldb3;Ldb3;Ldb3;Ldb3,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,24131,ENSMUSG00000021798,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16888,cg06006726,0.0000184,0.00000613,3.006082854,0.002862644,gain,ns,-0.00000115,0.0000104,-0.110593726,0.912010087,neg,ns,-0.002886313,0.003051317,-0.945923862,0.344924133,neg,ns,0.462276419,0.00017414,0.000104935,1.659514784,0.098023352,pos,ns,0.877681253,Slc24a2,Slc24a2_Exon,4,87073194,87073243,87073194,87073195,50,+,CGAGTGGGTCAAGGGTGTGTATCATGAGTTGGAAGATGCTATTCCTCATG,"Exon (Slc24a2-203/Slc24a2, exon 4 of 11)",4,86983124,87230477,247354,2,Slc24a2-203,157234,Slc24a2-203;Slc24a2-204;Slc24a2-201;Slc24a2-202;Slc24a2-208;Slc24a2-205;Slc24a2-206,Slc24a2;Slc24a2;Slc24a2;Slc24a2;Slc24a2;Slc24a2;Slc24a2,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,76376,ENSMUSG00000037996,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8968,cg19325516,-0.0000117,0.00000411,-2.839765994,0.004813094,loss,ns,-0.000000771,0.00000698,-0.110463778,0.912113054,neg,ns,-0.005375707,0.002044073,-2.629899567,0.008967231,neg,ns,2.047341644,0.0000684,0.0000703,0.973406372,0.331110298,pos,ns,0.931932727,Kcnc1,Kcnc1_threeUTR,7,46438448,46438497,46438448,46438449,50,+,CGAATAAATATAGTATTTTCCCAACAGAAACAGAGGACAGTAGCTTGGCT,3' UTR,7,46397648,46438704,41057,1,Kcnc1-203,40800,Kcnc1-203;Sergef-201;Sergef-206;Sergef-205,Kcnc1;Sergef;Sergef;Sergef,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,14,16502,ENSMUSG00000058975,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13236,cg24094043,-0.00000136,0.000000948,-1.43838379,0.151333971,loss,ns,-0.000000178,0.00000161,-0.110389481,0.912171925,neg,ns,-0.000773449,0.000471913,-1.638965258,0.102234931,neg,ns,0.990400693,0.0000247,0.0000162,1.519690346,0.129608052,pos,ns,0.984877549,Nlgn2,Nlgn2_Exon,11,69830590,69830639,69830590,69830591,50,+,CGTCACGTTTTTTTGTGAGCGGACCTAAGACCGGGAACACAAAACAGAGA,"Exon (Nlgn2-201/Nlgn2, exon 2 of 7)",11,69823122,69834849,11728,2,Nlgn2-201,4210,Nlgn2-201;Nlgn2-202;Nlgn2-203;Nlgn2-204,Nlgn2;Nlgn2;Nlgn2;Nlgn2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,17,216856,ENSMUSG00000051790,conserved gene and region,11,69830545,69830622,78,*,78,8,0.512820513,1.575757576,0.102564103,0.00000181,CpGisland,TRUE,U11,Tr-P
12833,cg19941852,-0.00000166,0.00000144,-1.153159501,0.249733283,loss,ns,0.000000269,0.00000244,0.1102346,0.912294652,pos,ns,0.002374253,0.000715386,3.318839576,0.001011642,pos,ns,2.994972963,-0.0000752,0.0000246,-3.057498432,0.002426361,neg,ns,0.960364887,Lysmd4,Lysmd4_threeUTR,7,67268304,67268353,67268352,67268353,50,+,TTAGTTTGCTGAATCTGTCCTCCGAGAGTGGACTGTGCTCAAAGTAATCG,3' UTR,7,67222544,67307330,84787,1,Lysmd4-206,45760,Lysmd4-206;Mef2a-208;Mef2a-204;Mef2a-206;Mef2a-211;Mef2a-203;Mef2a-202;Mef2a-201;Mef2a-210;Mef2a-205;Mef2a-209,Lysmd4;Mef2a;Mef2a;Mef2a;Mef2a;Mef2a;Mef2a;Mef2a;Mef2a;Mef2a;Mef2a,0;0;0;0;0;0;0;0;-2142;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,3,75099,ENSMUSG00000043831,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13393,cg09738906,0.0000567,0.000012,4.708221192,0.00000377,gain,ns,0.00000225,0.0000205,0.110162582,0.912351719,pos,ns,0.012596445,0.005992431,2.102059278,0.036354557,pos,ns,1.439441142,-0.000136035,0.000206079,-0.660110506,0.509673076,neg,ns,0.029547561,Nr2f2,Nr2f2_fiveUTR,7,70359912,70359961,70359960,70359961,50,-,GGCACTTTTTGAGGCGGCAGTACTGGCACTGGTTGCGATGGTGCTGGTCG,Promoter (<=1kb),7,70357763,70359921,2159,2,Nr2f2-204,0,Nr2f2-201;Nr2f2-203;Nr2f2-202;Nr2f2-205;Nr2f2-204;Nr2f2-206,Nr2f2;Nr2f2;Nr2f2;Nr2f2;Nr2f2;Nr2f2,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,69,11819,ENSMUSG00000030551,conserved gene but different region,7,70359750,70360467,718,*,718,76,0.703342618,0.857367313,0.105849582,8.30E-60,CpGisland,TRUE,U1,Pr-A
12029,cg18917189,-0.00000723,0.00000569,-1.270595145,0.204825427,loss,ns,-0.00000106,0.00000966,-0.110154342,0.912358248,neg,ns,-0.002864008,0.002831201,-1.011587725,0.312524118,neg,ns,0.505116462,0.00000724,0.0000974,0.074324935,0.940799774,pos,ns,0.877958151,Htr4,Htr4_Exon,18,62428029,62428078,62428029,62428030,50,+,CGCCATCTGCTGCCAGCCTTTGGTCTATAGGAACAAGATGACCCCTCTGC,"Exon (Htr4-201/Htr4, exon 5 of 7)",18,62324204,62467806,143603,1,Htr4-201,103825,Htr4-201;Htr4-203;Htr4-204;Htr4-202,Htr4;Htr4;Htr4;Htr4,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,15562,ENSMUSG00000026322,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7735,cg07413388,0.000000822,0.000000637,1.28910322,0.198323278,gain,ns,0.000000119,0.00000108,0.110075251,0.912420921,pos,ns,0.000590428,0.000317208,1.861325424,0.063644614,pos,ns,1.196238344,-0.0000198,0.0000109,-1.814981898,0.070492982,neg,ns,0.978723992,Arhgap15,Arhgap15_Intron,2,44017410,44017459,44017458,44017459,50,+,TTGCTCTGACATAAACGTTACATGGCTGGTTGCAGCCTCAGATTAATGCG,"Intron (Arhgap15-203/Arhgap15, intron 6 of 14)",2,43748824,44395953,647130,1,Arhgap15-203,268586,Arhgap15-203;Arhgap15-202;Arhgap15-201,Arhgap15;Arhgap15;Arhgap15,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,72,78,76117,ENSMUSG00000049744,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10551,cg25369173,-0.0000238,0.0000138,-1.734116341,0.08389156,loss,ns,0.00000257,0.0000234,0.109981896,0.912494896,pos,ns,-0.007657063,0.006843698,-1.118848714,0.264070893,neg,ns,0.578279466,-0.000192455,0.000235354,-0.817725546,0.414141973,neg,ns,0.783703144,Gm12469,Gm12469_Intergenic_upstream,4,54283026,54283075,54283074,54283075,50,+,TGAGCTGTTTGTTTTCCAGCTTACAGTCATGTTTTCCAATTCAGGTTACG,Distal Intergenic,4,54235670,54235876,207,2,Gm12469-201,-47150,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,9,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25929,cg15258250,0.00000514,0.00000314,1.639683737,0.102085277,gain,ns,0.000000586,0.00000533,0.109871546,0.91258234,pos,ns,0.000402299,0.00156171,0.257601613,0.796885298,pos,ns,0.098604185,-0.00000726,0.0000537,-0.135130756,0.892596191,neg,ns,0.735164407,Fbxo42,Fbxo42_Exon,4,141199632,141199681,141199680,141199681,50,-,TGGGGAACACTGAGACCCAGGGCTCAAAGGCAGACTCCTTCAGGTTCCCG,"Exon (Fbxo42-201/Fbxo42, exon 10 of 10)",4,141147913,141204062,56150,1,Fbxo42-201,51719,Fbxo42-201;Fbxo42-202,Fbxo42;Fbxo42,0;51710,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,213499,ENSMUSG00000028920,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16302,cg00452125,0.00000746,0.00000628,1.187714916,0.235854964,gain,ns,-0.00000117,0.0000107,-0.109871286,0.912582546,neg,ns,0.004339158,0.003125464,1.388324565,0.166035054,pos,ns,0.779800213,-0.000151431,0.000107484,-1.408867696,0.159876525,neg,ns,0.919077835,Mrm1,Mrm1_Intergenic_downstream,11,84726065,84726114,84726113,84726114,50,-,GATATTTTCATGGGACATTAAACCAGGAGTCAGGTGATGGGTTCCTTCCG,Distal Intergenic,11,84814743,84815390,648,2,Mrm1-203,89325,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,37,42,217038,ENSMUSG00000018405,conserved gene and region,11,84726113,84726148,36,*,36,6,0.722222222,1.411764706,0.166666667,0.00000387,CpGisland,TRUE,U11,Tr-P
21371,cg08008899,-0.0000148,0.00000783,-1.892797503,0.059316155,loss,ns,0.00000146,0.0000133,0.109857695,0.912593316,pos,ns,-0.001815666,0.00389783,-0.465814685,0.641675258,neg,ns,0.192684706,0.0000346,0.000134046,0.257938619,0.796625429,pos,ns,0.702517013,Cacna2d2,Cacna2d2_Exon,9,107513478,107513527,107513478,107513479,50,-,CGAGAAGGCACAGCCTGTGTCATGCTTCACACACCTGGTGCAGGCCAATG,"Exon (Cacna2d2-201/Cacna2d2, exon 11 of 38)",9,107399612,107529343,129732,1,Cacna2d2-201,113866,Cacna2d2-201;Cacna2d2-205;Cacna2d2-202;Cacna2d2-203;Cacna2d2-204;Cacna2d2-208;Cacna2d2-207;Cacna2d2-209,Cacna2d2;Cacna2d2;Cacna2d2;Cacna2d2;Cacna2d2;Cacna2d2;Cacna2d2;Cacna2d2,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,18,56808,ENSMUSG00000010066,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7930,cg13748038,0.0000235,0.00000488,4.820293479,0.00000225,gain,ns,0.000000909,0.00000829,0.109638254,0.912767209,pos,ns,-0.006684839,0.002429789,-2.751202055,0.006286962,neg,ns,2.201559139,0.000199717,0.0000836,2.390092674,0.017441064,pos,ns,0.858696599,Hif1an,Hif1an_Intron,19,44634034,44634083,44634082,44634083,50,-,ATCCTGATCGCCTTAGATATTGTTTCGAGTCAATCATCTGTCATGGTGCG,"Intron (Gm35460-201/Gm35460-201, intron 3 of 6)",19,44562850,44563952,1103,1,Hif1an-202,71233,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,31,319594,ENSMUSG00000036450,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6416,cg13585349,0.0000299,0.00000643,4.652904553,0.00000486,gain,ns,-0.0000012,0.0000109,-0.109361701,0.912986367,neg,ns,0.006121484,0.003202195,1.911652176,0.056842624,pos,ns,1.245325884,-0.000214644,0.000110123,-1.949122762,0.052182448,neg,ns,0.08277792,Gm37013,Gm37013_Intron,18,37178583,37178632,37178631,37178632,50,+,GAGTGGGCGGTAGGCAGGCTCCAGAGTGCTGTCTGGCAAGATAGTCCCCG,"Intron (Pcdha1-202/Pcdha1, intron 3 of 4)",18,36969916,37833296,863381,1,Gm37013-201,208667,Gm37013-201;Gm37388-201;Gm42416-201;Pcdha1-202;Pcdha1-201;Pcdha11-201;Pcdha11-202;Pcdha11-203;Pcdha11-204;Pcdha12-201;Pcdha2-201;Pcdha2-202;Pcdha3-201;Pcdha4-202;Pcdha4-201;Pcdha5-201;Pcdha6-202;Pcdha6-201;Pcdha6-203;Pcdha7-201;Pcdha8-201;Pcdha9-201;Pcdhac1-201;Pcdhac2-201,Gm37013;Gm37388;Gm42416;Pcdha1;Pcdha1;Pcdha11;Pcdha11;Pcdha11;Pcdha11;Pcdha12;Pcdha2;Pcdha2;Pcdha3;Pcdha4;Pcdha4;Pcdha5;Pcdha6;Pcdha6;Pcdha6;Pcdha7;Pcdha8;Pcdha9;Pcdhac1;Pcdhac2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,14,100384868,ENSMUSG00000103458,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3659,cg15967225,0.000104632,0.0000233,4.499564562,0.00000964,gain,ns,0.00000432,0.0000395,0.109359304,0.912988266,pos,ns,0.025800034,0.011573634,2.229207635,0.026516455,pos,ns,1.576484534,-0.000589548,0.000398016,-1.481215365,0.139564875,neg,ns,0.303337277,Erfl,Erfl_Promoter,7,24951315,24951364,24951315,24951316,50,-,CGCATTACGCACTTAATCCGCCTGATTGAATGTTTTGCTTTCGCCCAAAT,Promoter (6-7kb),7,24927445,24944494,17050,2,Erfl-201,-6870,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,29,36,,NA,mapped to different genes,7,24951274,24951467,194,*,194,18,0.567010309,1.164,0.092783505,1.92E-13,CpGisland,TRUE,U13,Hc-P
16534,cg24140007,-0.00000628,0.00000881,-0.712877656,0.476457717,loss,ns,0.00000164,0.000015,0.109331423,0.913010362,pos,ns,-0.009499663,0.00438624,-2.165787431,0.031089595,neg,ns,1.50738493,0.000122871,0.000150842,0.814567171,0.415945414,pos,ns,0.899506711,Camkmt,Camkmt_Intron,17,85393256,85393305,85393304,85393305,50,+,CTGATTTGCCTGCTTTGTGACTTTTCTATTTCATAATTATTTTTAAAACG,"Intron (Camkmt-201/Camkmt, intron 4 of 10)",17,85090552,85458588,368037,1,Camkmt-201,302704,Camkmt-201,Camkmt,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,41,44,73582,ENSMUSG00000071037,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13401,cg08370996,0.000149763,0.0000165,9.069905225,1.40E-17,gain,yes,-0.00000306,0.0000281,-0.109158654,0.913147278,neg,ns,0.013310541,0.008218246,1.619632853,0.10632798,pos,ns,0.973352436,-0.000330153,0.000282625,-1.168167149,0.243636954,neg,ns,0.083540671,Nr2f2,Nr2f2_Intron,7,70361638,70361687,70361638,70361639,50,-,CGGAGAGAAAAGAACAGAGAATCAAAGTGATCAAATATGCTAAAAAGGGG,"Intron (Nr2f2-202/Nr2f2, intron 1 of 2)",7,70354439,70366735,12297,2,Nr2f2-202,5048,Nr2f2-201;Nr2f2-202;Nr2f2-205;Nr2f2-204;Nr2f2-206,Nr2f2;Nr2f2;Nr2f2;Nr2f2;Nr2f2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,69,11819,ENSMUSG00000030551,conserved gene but different region,7,70361495,70361641,147,*,147,15,0.619047619,1.113636364,0.102040816,6.81E-12,CpGisland,TRUE,U1,Pr-A
9816,cg22595863,0.00000963,0.00000885,1.087600146,0.277616538,gain,ns,-0.00000164,0.000015,-0.109122318,0.913176074,neg,ns,0.004163189,0.004405637,0.944968739,0.345410766,pos,ns,0.46166413,-0.000297699,0.000151509,-1.964886734,0.050320138,neg,ns,0.810441502,Trps1,Trps1_Intron,15,50929596,50929645,50929644,50929645,50,+,GTGGATTGAACCTCAAAGACTCCTTTGACGCAAGTGTTATTTTGACCACG,"Intron (Gm48913-201/Gm48913-201, intron 3 of 3)",15,50846176,50890463,44288,2,Trps1-208,-39133,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,36,83925,ENSMUSG00000038679,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6786,cg00597118,0.00000117,0.00000311,0.374912419,0.707981961,gain,ns,0.000000577,0.00000529,0.109099085,0.913194486,pos,ns,0.004586971,0.001550166,2.959018532,0.003323939,pos,ns,2.478346902,-0.00015595,0.0000533,-2.925328515,0.00369489,neg,ns,0.930160417,Azin1,Azin1_fiveUTR,15,38514558,38514607,38514606,38514607,50,+,GCACTTCTCCTAGGCCCTCTGGGTAGTTGTATACTTGGTCAGAAAGTTCG,5' UTR,15,38487427,38519266,31840,2,Azin1-201,4659,Azin1-201;Azin1-203;Azin1-205;Azin1-207;Azin1-204;Azin1-208,Azin1;Azin1;Azin1;Azin1;Azin1;Azin1,0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,9,54375,ENSMUSG00000037458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13722,cg05634634,0.00000325,0.0000016,2.030734107,0.04313516,gain,ns,0.000000296,0.00000272,0.108937944,0.913322191,pos,ns,0.000812994,0.000795553,1.021923272,0.307614034,pos,ns,0.511993855,-0.00000712,0.0000274,-0.260249582,0.794844034,neg,ns,0.962915415,Rapgef4,Rapgef4_Exon,2,72256290,72256339,72256290,72256291,50,-,CGGAGTTATGTACGGCAATTAAATGTGATTGACAACCAGAGAACTTTATC,"Exon (Rapgef4-202/Rapgef4, exon 31 of 31)",2,71981240,72257474,276235,1,Rapgef4-202,275050,Rapgef4-202;Rapgef4-203;Rapgef4-201;Rapgef4-210;Rapgef4-206,Rapgef4;Rapgef4;Rapgef4;Rapgef4;Rapgef4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,11,56508,ENSMUSG00000049044,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21702,cg22798915,0.00000484,0.00000236,2.046269303,0.0415732,gain,ns,0.000000437,0.00000402,0.108883436,0.913365389,pos,ns,-0.000514015,0.001176451,-0.436920122,0.662473462,neg,ns,0.178831514,0.0000623,0.0000405,1.539716159,0.124649646,pos,ns,0.947331633,Zfhx3,Zfhx3_Intron,8,108908722,108908771,108908770,108908771,50,+,TTCATGACAGCTAATGTTTCTCAGCTCTTGAGCCTGCCGACAGGCAAACG,"Intron (Zfhx3-204/Zfhx3, intron 10 of 15)",8,107942644,108961630,1018987,1,Zfhx3-204,966078,Zfhx3-204;Zfhx3-201,Zfhx3;Zfhx3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,114,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4052,cg19000923,0.00000174,0.00000565,0.308154502,0.758171726,gain,ns,0.00000104,0.0000096,0.108846722,0.913394485,pos,ns,0.006453901,0.00281238,2.294818262,0.02241144,pos,ns,1.649530245,-0.000230227,0.0000967,-2.380406535,0.017897687,neg,ns,0.896206734,Il1rap,Il1rap_Intron,16,26662938,26662987,26662986,26662987,50,+,TAGTTAAAACGTATACCCTGCTATATAAATGCTAATTGCTGTCAGGAGCG,"Intron (Il1rap-202/Il1rap, intron 2 of 10)",16,26581704,26725264,143561,1,Il1rap-202,81234,Il1rap-202;Il1rap-203;Il1rap-206;Il1rap-201;Il1rap-205,Il1rap;Il1rap;Il1rap;Il1rap;Il1rap,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,3,16180,ENSMUSG00000022514,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4145,cg08731429,0.00000535,0.00000317,1.687983351,0.092420149,gain,ns,-0.000000586,0.00000539,-0.108669212,0.913535166,neg,ns,-0.001071145,0.001578509,-0.678579873,0.497910346,neg,ns,0.30284885,-0.0000211,0.0000543,-0.387938865,0.698327525,neg,ns,0.949081946,Syngap1,Syngap1_Exon,17,26966850,26966899,26966850,26966851,50,+,CGCCACTAACCCCACTGAAGCCCGTCCCTTCAGGCTGATGCTGGTGGAGG,"Exon (Syngap1-204/Syngap1, exon 18 of 19)",17,26941253,26972434,31182,1,Syngap1-204,25597,Syngap1-204;Syngap1-213;Syngap1-208;Syngap1-202;Syngap1-207;Syngap1-203;Syngap1-201;Syngap1-212;Syngap1-214;Syngap1-206;Syngap1-209;Syngap1-210,Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,18,240057,ENSMUSG00000067629,conserved gene and region,17,26966844,26967077,234,*,234,16,0.641025641,0.701649175,0.068376068,6.16E-10,CpGisland,TRUE,U11,Tr-P
13019,cg02574621,-0.0000118,0.00000396,-2.97016043,0.003208969,loss,ns,0.000000731,0.00000673,0.108620257,0.913573965,pos,ns,-0.002321717,0.001971831,-1.177442368,0.239922164,neg,ns,0.61992963,0.0000197,0.0000678,0.291174419,0.771112649,pos,ns,0.91383506,Rora,Rora_Exon,9,69197503,69197552,69197503,69197504,50,+,CGCAGGGCAGGCATGGTACAGAGCGCTTCCTTGCACAGCCTTGCCCATGA,"Exon (Rora-206/Rora, exon 3 of 6)",9,68653786,69388246,734461,1,Rora-201,543717,Rora-201;Rora-206;Rora-203,Rora;Rora;Rora,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,19,19883,ENSMUSG00000032238,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7136,cg14272146,-0.00000108,0.00000551,-0.196326386,0.844483349,loss,ns,-0.00000102,0.00000936,-0.108619186,0.913574815,neg,ns,-0.003768504,0.0027424,-1.374162854,0.170383812,neg,ns,0.768571671,-0.0000192,0.0000943,-0.203595721,0.838803018,neg,ns,0.9033101,Gm5973,Gm5973_Intergenic_upstream,1,41350555,41350604,41350603,41350604,50,+,TGGAGGCCAAATGTTTAATTACACATGACAGCTGGAGCTGTAGGAGTCCG,Distal Intergenic,1,40863737,40864232,496,2,Gm5973-201,-486323,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,18,18,546733,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
322,cg08809534,-0.00000419,0.00000394,-1.063289848,0.288478092,loss,ns,-0.000000726,0.00000669,-0.108522505,0.913651438,neg,ns,-0.003789448,0.001959727,-1.933661729,0.054064894,neg,ns,1.267084644,0.000082,0.0000674,1.216677797,0.224652333,pos,ns,0.928815682,Klhl29,Klhl29_Exon,12,5102752,5102801,5102800,5102801,50,+,TCTCTGCCTTCAACAACAATTTTCAGGTCTGTAAACGCTTTCGCTCTGCG,"Exon (Klhl29-201/Klhl29, exon 6 of 14)",12,5077472,5375682,298211,2,Klhl29-201,272881,Klhl29-201;Klhl29-202,Klhl29;Klhl29,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,23,208439,ENSMUSG00000020627,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10623,cg16735021,-0.00000349,0.00000181,-1.927983611,0.054770379,loss,ns,-0.000000334,0.00000308,-0.108490295,0.913676966,neg,ns,0.000334266,0.000901311,0.370866749,0.710990085,pos,ns,0.148136456,-0.0000716,0.000031,-2.308679161,0.021618975,neg,ns,0.018903625,Acin1,Acin1_fiveUTR,14,54686628,54686677,54686628,54686629,50,-,CGTCCCGACGGCTTCGGGCATCTTCGGTAATTTCCGCCAACGCCCTTCGA,Promoter (<=1kb),14,54673754,54686633,12880,2,Acin1-212,0,1700123O20Rik-201;1700123O20Rik-202;1700123O20Rik-204;1700123O20Rik-203;Acin1-201;Acin1-218;Acin1-203;Acin1-206;Acin1-212;Acin1-210,1700123O20Rik;1700123O20Rik;1700123O20Rik;1700123O20Rik;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1,0;0;0;-367;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,7,22,56215,ENSMUSG00000022185,conserved gene and region,14,54686230,54687055,826,*,826,78,0.633171913,0.949845201,0.094430993,3.48E-57,CpGisland,TRUE,U1,Pr-A
16304,cg09357573,0.00000036,0.0000039,0.092340209,0.926487387,gain,ns,0.000000718,0.00000662,0.108462057,0.913699346,pos,ns,0.000493046,0.001940621,0.25406599,0.799613012,pos,ns,0.097120148,0.000000652,0.0000667,0.009772879,0.992208781,pos,ns,0.939578741,Mrm1,Mrm1_Intergenic_downstream,11,84726079,84726128,84726127,84726128,50,+,ACATTAAACCAGGAGTCAGGTGATGGGTTCCTTCCGTCTACGCCTATCCG,Distal Intergenic,11,84814743,84815390,648,2,Mrm1-203,89262,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,37,42,217038,ENSMUSG00000018405,conserved gene and region,11,84726113,84726148,36,*,36,6,0.722222222,1.411764706,0.166666667,0.00000387,CpGisland,TRUE,U11,Tr-P
5048,cg11563967,-0.0000568,0.00000787,-7.209207038,4.32E-12,loss,yes,-0.00000145,0.0000134,-0.108444446,0.913713303,neg,ns,-0.001868551,0.003919461,-0.476736903,0.633885354,neg,ns,0.197989283,-0.000014,0.00013479,-0.103929201,0.917292738,neg,ns,0.838592536,Nup214,Nup214_Exon,2,32047434,32047483,32047482,32047483,50,-,CCCTCCTACTTTTGGGGGATCCCCTGGGTTTGGAGGGGTGCCAGCATTCG,"Exon (Nup214-201/Nup214, exon 33 of 36)",2,31974436,32052371,77936,1,Nup214-201,72998,Fam78a-203;Nup214-201;Nup214-208;Nup214-210;Nup214-209;Nup214-203,Fam78a;Nup214;Nup214;Nup214;Nup214;Nup214,0;0;0;0;-3512;-4209,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,227720,ENSMUSG00000001855,conserved gene and region,2,32047482,32047573,92,*,92,8,0.652173913,0.826038159,0.086956522,0.00000628,CpGisland,TRUE,U10,Tr-S
26870,cg10090737,-0.0000381,0.0000105,-3.608876541,0.000358427,loss,ns,0.00000194,0.0000179,0.108365619,0.913775778,pos,ns,0.00562982,0.005249197,1.072510794,0.284324867,pos,ns,0.546185155,-0.000246176,0.000180519,-1.363711587,0.173647775,neg,ns,0.593945767,Nol4l,Nol4l_Intergenic_upstream,2,153560910,153560959,153560958,153560959,50,+,GAAGCTGCAGCTGGGTAATTATTGCGAACATCCATCCTGCCTCCAGCCCG,Distal Intergenic,2,153407462,153529971,122510,2,Nol4l-201,-30939,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,14,329540,ENSMUSG00000061411,mapped to different genes,2,153560820,153560959,140,*,140,10,0.678571429,0.646352724,0.071428571,0.0000015,CpGisland,TRUE,NA,NRS
2482,cg24044043,-0.00000645,0.00000137,-4.701868736,0.00000389,loss,ns,0.000000253,0.00000233,0.108316531,0.913814684,pos,ns,-0.000683672,0.000683228,-1.000649561,0.317776688,neg,ns,0.497877966,-0.0000181,0.0000235,-0.769894439,0.441948781,neg,ns,0.032644947,Spred2,Spred2_fiveUTR,11,19924332,19924381,19924380,19924381,50,+,TTTTTTCGGTCGCAAGTAGGAAGCTTTTTGCACTCCACCACCTCTGGCCG,Promoter (<=1kb),11,19924375,20024026,99652,1,Spred2-202,0,Spred2-202;Spred2-201,Spred2;Spred2,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,8,13,114716,ENSMUSG00000045671,conserved gene and region,11,19924342,19924793,452,*,452,44,0.703539823,0.817763158,0.097345133,3.79E-33,CpGisland,TRUE,U1,Pr-A
27325,cg14172937,0.0000189,0.00000318,5.943982377,7.48E-09,gain,yes,0.000000584,0.0000054,0.108259402,0.913859962,pos,ns,0.003515388,0.001580984,2.223544936,0.02689958,pos,ns,1.570254497,-0.000028,0.0000544,-0.514559727,0.607227364,neg,ns,0.026388306,Slc12a5,Slc12a5_fiveUTR,2,164968219,164968268,164968267,164968268,50,+,GCGGGTGTGAGCGTGTGTCCGTGTGCGAGTGTGTGTGCGCCGGGCGGGCG,Promoter (<=1kb),2,164968239,164999727,31489,1,Slc12a5-208,0,Slc12a5-202;Slc12a5-209;Slc12a5-207;Slc12a5-201;Slc12a5-208;Slc12a5-210;Slc12a5-206,Slc12a5;Slc12a5;Slc12a5;Slc12a5;Slc12a5;Slc12a5;Slc12a5,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,9,57138,ENSMUSG00000017740,conserved gene and region,2,164967855,164968493,639,*,639,68,0.719874804,0.821958232,0.106416275,9.46E-54,CpGisland,TRUE,NA,NRS
1347,cg00663972,0.0000671,0.00000848,7.913516292,4.47E-14,gain,yes,0.00000156,0.0000144,0.108238469,0.913876553,pos,ns,0.011889532,0.00422262,2.81567645,0.005179247,pos,ns,2.285733376,-0.000227036,0.000145216,-1.563439085,0.118969583,neg,ns,0.079825189,Sox1,Sox1_fiveUTR,8,12396090,12396139,12396090,12396091,50,-,CGGCCTCTTTGGCAAGTGGTTTGTGCATCAGGAGAAACTTTCCACCTGCG,Promoter (<=1kb),8,12395295,12400126,4832,1,Sox1-201,795,Sox1-201,Sox1,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,15,20664,ENSMUSG00000096014,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
6034,cg02886823,0.0000212,0.00000533,3.980867989,0.0000856,gain,ns,-0.00000098,0.00000906,-0.108230367,0.913882974,neg,ns,0.004698628,0.002652888,1.771136872,0.077520463,pos,ns,1.11058364,0.0000823,0.0000912,0.902120278,0.367693357,pos,ns,0.026696393,Cxxc5,Cxxc5_Intergenic_downstream,18,35887726,35887775,35887774,35887775,50,+,CCGGGGAGGCAGGTGGAGCTGCGTCCTCATCTTTGTTCCCATCTGGAGCG,Distal Intergenic,18,35854738,35858619,3882,1,Cxxc5-205,32988,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,49,67393,ENSMUSG00000046668,conserved gene but different region,18,35887596,35887837,242,*,242,21,0.702479339,0.70378064,0.08677686,5.36E-15,CpGisland,TRUE,U3,Pr-B
18285,cg15129763,-0.00000827,0.00000379,-2.183727255,0.029731645,loss,ns,0.000000696,0.00000643,0.108175936,0.913926115,pos,ns,-0.001273137,0.001884093,-0.675729408,0.499716221,neg,ns,0.301276553,0.0000601,0.0000648,0.927714223,0.354277563,pos,ns,0.911589209,Gm48316,Gm48316_Intergenic_upstream,13,94681199,94681248,94681247,94681248,50,-,CAAAATACCCTAAATTATGACCTTTCTAAAACCTATCAGAAGGGCGAGCG,Distal Intergenic,13,94752270,94752593,324,1,Gm48316-201,-71071,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,36,42,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24457,cg06753201,-0.000000707,0.00000138,-0.510858104,0.60981403,loss,ns,-0.000000254,0.00000235,-0.108166248,0.913933793,neg,ns,-0.000402182,0.000688867,-0.583831378,0.559758323,neg,ns,0.25199944,0.00000405,0.0000237,0.171126182,0.864236192,pos,ns,0.95568913,Ago3,Ago3_Intron,4,126375436,126375485,126375436,126375437,50,+,CGGGCAGCAGTTGAATCCTTGTTCTGTACATCTTGTATTTTCTGTGATAG,"Intron (Ago3-201/Ago3, intron 6 of 18)",4,126332732,126429556,96825,2,Ago3-201,54071,Ago3-201;Ago3-205,Ago3;Ago3,0;28809,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,8,214150,ENSMUSG00000028842,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15110,cg26610667,0.00000245,0.00000151,1.620331473,0.106177828,gain,ns,0.000000278,0.00000257,0.108068255,0.91401146,pos,ns,-0.000565947,0.000753498,-0.751092852,0.453166555,neg,ns,0.34374215,0.0000088,0.0000259,0.339749167,0.734275502,pos,ns,0.971402151,Zfp827,Zfp827_threeUTR,8,79189887,79189936,79189887,79189888,50,-,CGCGTCCACACCGGGGAGCGGCCCTTCCACTGTGACCAGTGCAGCTACAG,3' UTR,8,79028437,79193743,165307,1,Zfp827-202,161450,Zfp827-202;Zfp827-203;Zfp827-209;Zfp827-206;Zfp827-205;Zfp827-207;Zfp827-204,Zfp827;Zfp827;Zfp827;Zfp827;Zfp827;Zfp827;Zfp827,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,threeUTR,12,28,622675,ENSMUSG00000071064,conserved gene and region,8,79189795,79190007,213,*,213,16,0.61971831,0.797192983,0.075117371,1.49E-10,CpGisland,TRUE,U11,Tr-P
25015,cg02683277,0.0000905,0.00000674,13.42488251,1.05E-32,gain,yes,-0.00000124,0.0000115,-0.108018398,0.914050976,neg,ns,0.011095532,0.003356049,3.3061293,0.001057011,pos,ns,2.97592038,0.00000929,0.000115414,0.080488112,0.935900987,pos,ns,0.146096778,Fgfr2,Fgfr2_Intron,7,131542589,131542638,131542637,131542638,50,+,CGCATTTAACTTGGATGACATTTTGATTTCATCATTAGCATCCGGCGCCG,"Intron (Fgfr2-217/Fgfr2, intron 2 of 6)",7,130162451,133123350,2960900,2,Fgfr2-217,1580712,Fgfr2-217;Hmx3-201,Fgfr2;Hmx3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,58,79,14183,ENSMUSG00000030849,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
6674,cg02135089,-0.00000586,0.00000432,-1.357174972,0.175712909,loss,ns,0.000000793,0.00000734,0.107982424,0.914079489,pos,ns,-0.005313716,0.002150515,-2.470904281,0.014014657,neg,ns,1.853417527,0.000120635,0.000074,1.631178281,0.103868172,pos,ns,0.8977369,Dennd1a,Dennd1a_Intron,2,37985931,37985980,37985931,37985932,50,+,CGACAGCTTCAATGTCAAAAATACAAAGTCTGAACCCTGGCAGGAAGTCT,"Intron (Dennd1a-201/Dennd1a, intron 10 of 21)",2,37798991,38287375,488385,2,Dennd1a-201,301395,Dennd1a-201;Dennd1a-207;Dennd1a-210;Dennd1a-204,Dennd1a;Dennd1a;Dennd1a;Dennd1a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,46,227801,ENSMUSG00000035392,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8513,cg05268271,-0.0000414,0.00000708,-5.850354011,1.25E-08,loss,yes,-0.0000013,0.000012,-0.107898775,0.914145789,neg,ns,-0.005781615,0.00352622,-1.639607186,0.102101214,neg,ns,0.990969094,0.000097,0.000121266,0.800188727,0.424214233,pos,ns,0.501166145,Qdpr,Qdpr_Intron,5,45267123,45267172,45267171,45267172,50,+,CATATTCTTAGATGTGACGTTGCCTTGGTAACCACAACTTGGTGACCTCG,"Intron (D5Ertd615e-202/D5Ertd615e-202, intron 4 of 5)",5,45434145,45443596,9452,2,Qdpr-210,176424,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,110391,ENSMUSG00000015806,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9978,cg05892496,-0.0000272,0.00000543,-5.002532881,0.00000095,loss,yes,0.000000995,0.00000923,0.107870688,0.914168051,pos,ns,0.006355455,0.002703113,2.351161581,0.019340822,pos,ns,1.713525065,-0.000379038,0.000093,-4.077442401,0.0000579,neg,ns,0.814466725,Hectd1,Hectd1_Exon,12,51769085,51769134,51769085,51769086,50,-,CGAACCCAAGCTGATGTCGCTGCTACTGGCCACGCTACACACAGAACTGC,"Exon (Hectd1-201/Hectd1, exon 25 of 43)",12,51743722,51829536,85815,2,Hectd1-201,60402,Hectd1-201;Hectd1-202;Hectd1-204,Hectd1;Hectd1;Hectd1,0;0;-3854,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,19,19,207304,ENSMUSG00000035247,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16820,cg14367547,-0.00000554,0.00000459,-1.20740595,0.228196258,loss,ns,0.000000841,0.0000078,0.107836511,0.914195139,pos,ns,-0.005523962,0.002285653,-2.416798385,0.016234843,neg,ns,1.789551899,0.000180717,0.0000786,2.299100961,0.02216392,pos,ns,0.919037569,Gm8504,Gm8504_Intergenic_upstream,12,86636023,86636072,86636023,86636024,50,+,CGGCGTAATGTCTTTTGTTAATTAGTTTGTCAGCACTGTTTTAATATCCC,Distal Intergenic,12,86650573,86651662,1090,1,Gm8504-201,-14501,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,8,667191,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5363,cg11499481,0.0000121,0.00000219,5.548898916,6.17E-08,gain,yes,0.000000401,0.00000372,0.107807947,0.91421778,pos,ns,0.005357735,0.001089494,4.917633811,0.00000142,pos,ns,5.846702443,-0.0000974,0.0000375,-2.59961032,0.009779587,neg,ns,0.045177526,Lmx1b,Lmx1b_Intron,2,33616783,33616832,33616783,33616784,50,-,CGAGGTCTTTCTGAGCAGACTGCTAAGCACTGGCTGTCTCCCCCGAGAGC,"Intron (Lmx1b-201/Lmx1b, intron 2 of 7)",2,33560965,33640608,79644,2,Lmx1b-201,23776,Lmx1b-201;Lmx1b-203;Lmx1b-204;Lmx1b-202,Lmx1b;Lmx1b;Lmx1b;Lmx1b,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,26,16917,ENSMUSG00000038765,conserved gene and region,2,33616662,33616784,123,*,123,19,0.707317073,1.243085106,0.154471545,9.00E-19,CpGisland,TRUE,NA,NRS
11371,cg24653257,0.0000147,0.00000292,5.033354347,0.000000819,gain,yes,-0.000000535,0.00000496,-0.107773116,0.914245387,neg,ns,0.004000508,0.001453918,2.751535332,0.006280724,pos,ns,2.201990314,-0.0000617,0.00005,-1.23300807,0.218506934,neg,ns,0.036224613,Hand1,Hand1_Promoter,11,57837144,57837193,57837192,57837193,50,-,CCTGTTTATATTAGCGCGGTGTAAAATATTCTCGCTGTCTTGGGGAATCG,Promoter (4-5kb),11,57828705,57832818,4114,2,Hand1-203,-4375,Hand1-203;Hand1-201;Hand1-202,Hand1;Hand1;Hand1,-4326;-4997;-4326,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,4,4,15110,ENSMUSG00000037335,conserved gene and region,11,57837102,57837281,180,*,180,18,0.533333333,1.408695652,0.1,4.82E-14,CpGisland,TRUE,U13,Hc-P
3347,cg00944045,-0.0000309,0.00000646,-4.77954838,0.00000272,loss,ns,-0.00000118,0.000011,-0.107752055,0.91426208,neg,ns,-0.007140042,0.003216697,-2.219681037,0.027163751,neg,ns,1.566010261,-0.00011622,0.000110622,-1.050602785,0.294259363,neg,ns,0.832164267,Zmat4,Zmat4_fiveUTR,8,23797372,23797421,23797420,23797421,50,-,TATTACATGCTTCACCCCAGGGATGGAGGGTGTCCTGCCAAGAGGCTCCG,5' UTR,8,23636019,23902111,266093,1,Zmat4-203,161353,Zmat4-203;Zmat4-201;Zmat4-202;Zmat4-206;Zmat4-204,Zmat4;Zmat4;Zmat4;Zmat4;Zmat4,0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,1,320158,ENSMUSG00000037492,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24738,cg13588645,-0.0000107,0.0000042,-2.546179211,0.011374516,loss,ns,0.000000768,0.00000713,0.107741538,0.914270416,pos,ns,0.002482178,0.002088835,1.188307533,0.235621834,pos,ns,0.627784468,-0.000193194,0.0000718,-2.689416116,0.007545178,neg,ns,0.057496186,R3hdm1,R3hdm1_fiveUTR,1,128103344,128103393,128103392,128103393,50,+,CTGCCGCTGGAGCCGGTGTCCGGGCTGGTGATGGGGTTAATTCCCTTTCG,Promoter (<=1kb),1,128103301,128183131,79831,1,R3hdm1-215,43,R3hdm1-215;R3hdm1-209;R3hdm1-208;R3hdm1-201;R3hdm1-202;Zranb3-201;Zranb3-203;Zranb3-202;Zranb3-205;Zranb3-204,R3hdm1;R3hdm1;R3hdm1;R3hdm1;R3hdm1;Zranb3;Zranb3;Zranb3;Zranb3;Zranb3,0;0;0;0;0;-882;-343;-297;-881;-890,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,7,226412,ENSMUSG00000056211,conserved gene and region,1,128103259,128103823,565,*,565,61,0.709734513,0.857594307,0.107964602,1.06E-48,CpGisland,TRUE,NA,NRS
14377,cg02184281,-0.000054,0.00000741,-7.284365871,2.69E-12,loss,yes,0.00000136,0.0000126,0.107627017,0.914361187,pos,ns,0.008964358,0.003688756,2.430184326,0.015658427,pos,ns,1.805251881,-0.000367571,0.000126856,-2.897543088,0.004028874,neg,ns,0.781895992,Smad7,Smad7_Exon,18,75394309,75394358,75394309,75394310,50,-,CGCCAGTTCATCAGCAGCTGCCCGTGCTGGCTAGAGGTCATCTTCAACAG,"Exon (Smad7-201/Smad7, exon 4 of 4)",18,75367529,75395935,28407,1,Smad7-201,26780,Smad7-201;Smad7-202;Smad7-205;Smad7-204;Smad7-203,Smad7;Smad7;Smad7;Smad7;Smad7,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,19,17131,ENSMUSG00000025880,conserved gene and region,18,75394309,75394451,143,*,143,10,0.608391608,0.760638298,0.06993007,0.00000182,CpGisland,TRUE,U10,Tr-S
19248,cg13610315,-0.00000228,0.00000309,-0.738054058,0.461039935,loss,ns,0.000000564,0.00000525,0.107567019,0.914408743,pos,ns,0.004048106,0.001536737,2.634221971,0.00885638,pos,ns,2.052743768,-0.000148389,0.0000528,-2.807839348,0.005303712,neg,ns,0.880497666,Kmt2d,Kmt2d_Exon,15,98844394,98844443,98844394,98844395,50,+,CGTACTGCCTGACTCTGCTGCAGCTGCCGCTGCATGAGGAGTGCCTGTAG,"Exon (Kmt2d-202/Kmt2d, exon 40 of 55)",15,98831669,98871183,39515,2,Kmt2d-202,26740,Kmt2d-202;Kmt2d-201;Kmt2d-205,Kmt2d;Kmt2d;Kmt2d,0;0;4794,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,16,381022,ENSMUSG00000048154,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14252,cg13078464,0.0000294,0.00000776,3.787533205,0.000182726,gain,ns,0.00000142,0.0000132,0.107451454,0.914500344,pos,ns,-0.003092124,0.003862086,-0.800635726,0.423955725,neg,ns,0.372679496,0.000154495,0.000132817,1.163215907,0.2456365,pos,ns,0.793773657,Ihh,Ihh_Intergenic_upstream,1,74964856,74964905,74964856,74964857,50,+,CGGGTAGGCGGGGAGGTGGGCCACTGCTTTATTAAACACAGGGAAAACTA,Downstream (2-3kb),1,74945315,74951672,6358,2,Ihh-201,-13184,Nhej1-201,Nhej1,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_upstream,2,3,16147,ENSMUSG00000006538,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9456,cg09129254,0.0000396,0.00000586,6.752890194,7.16E-11,gain,yes,-0.00000107,0.00000996,-0.107449532,0.914501868,neg,ns,-0.001268876,0.002918079,-0.434832518,0.663986543,neg,ns,0.177840722,0.000279079,0.000100352,2.780986072,0.005751042,pos,ns,0.120955628,Csmd3,Csmd3_fiveUTR,15,48791976,48792025,48792024,48792025,50,+,TCACAGCTCGGAGTGAATGGTGTTTCTGGGATACCACAGCAACCTTGACG,Promoter (<=1kb),15,47580638,48791989,1211352,2,Csmd3-201,0,Csmd3-204;Csmd3-201;Csmd3-209;Csmd3-205;Csmd3-203,Csmd3;Csmd3;Csmd3;Csmd3;Csmd3,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,16,239420,ENSMUSG00000022311,conserved gene but different region,15,48791819,48792094,276,*,276,17,0.550724638,0.814583333,0.061594203,8.17E-10,CpGisland,TRUE,U13,Hc-P
22050,cg04228573,-0.00000512,0.00000158,-3.248351378,0.001288098,loss,ns,-0.000000288,0.00000268,-0.107436283,0.914512369,neg,ns,-0.001867889,0.000785119,-2.379114751,0.017959373,neg,ns,1.745708825,0.0000489,0.000027,1.810535798,0.071180793,pos,ns,0.041588219,Map2k6,Map2k6_fiveUTR,11,110399083,110399132,110399083,110399084,50,+,CGCCCTTCGCAGGAAGGACGTCTGCGCACTAAGATACTCAGTTCCAAGTT,Promoter (<=1kb),11,110399122,110513641,114520,1,Map2k6-201,0,Map2k6-201;Map2k6-202;Map2k6-204,Map2k6;Map2k6;Map2k6,0;0;-127,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,5,26399,ENSMUSG00000020623,conserved gene but different region,11,110398916,110399108,193,*,193,14,0.533678757,1.03051106,0.07253886,4.33E-09,CpGisland,TRUE,U2,Pr-W
1328,cg25082847,0.0000324,0.00000562,5.765103593,1.97E-08,gain,yes,-0.00000103,0.00000955,-0.107408305,0.914534546,neg,ns,0.007876748,0.002797828,2.815308118,0.005185037,pos,ns,2.285248159,-0.000160049,0.0000962,-1.66341891,0.097239176,neg,ns,0.088080364,Fezf2,Fezf2_fiveUTR,14,12346783,12346832,12346783,12346784,50,-,CGCGTGGAACCGGGTTTTGTGTTTTTCTAAAATAAAGAGAAGGATTATCA,5' UTR,14,12343388,12348189,4802,2,Fezf2-202,1357,Fezf2-203;Fezf2-201;Fezf2-202,Fezf2;Fezf2;Fezf2,0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,13,45,54713,ENSMUSG00000021743,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7775,cg01755266,-0.0000021,0.0000016,-1.312466519,0.190333662,loss,ns,-0.000000292,0.00000272,-0.107323059,0.914602116,neg,ns,-0.000676086,0.000796049,-0.849302603,0.396368323,neg,ns,0.401901061,0.0000119,0.0000274,0.433034317,0.665290971,pos,ns,0.960933607,Nlrx1,Nlrx1_Exon,9,44262941,44262990,44262989,44262990,50,-,TAGAGCTTCTGCAGGTTGGTATCAGAGAAACCGCAGATCTCACCATAGCG,"Exon (Nlrx1-201/Nlrx1, exon 6 of 10)",9,44252717,44268491,15775,2,Nlrx1-201,5501,Nlrx1-201;Nlrx1-203;Nlrx1-202;Nlrx1-204;Nlrx1-206;Nlrx1-205,Nlrx1;Nlrx1;Nlrx1;Nlrx1;Nlrx1;Nlrx1,0;0;0;0;3541;5245,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,270151,ENSMUSG00000032109,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12019,cg03595990,-0.0000343,0.00000844,-4.061936721,0.0000617,loss,ns,0.00000154,0.0000143,0.107253591,0.914657179,pos,ns,-0.002183632,0.00420095,-0.519794755,0.603577595,neg,ns,0.21926689,-0.000513422,0.00014447,-3.553825515,0.000438795,neg,ns,0.642541524,Dpp4,Dpp4_Intron,2,62361813,62361862,62361813,62361814,50,-,CGTGAGGAAGTGTAGCGTGTCTCTTGCCATGGAGGAAACCACTTTTCATG,"Intron (Gm13561-201/Gm13561-201, intron 1 of 4)",2,62330073,62412231,82159,2,Dpp4-201,50369,Dpp4-201;Dpp4-202;Dpp4-204,Dpp4;Dpp4;Dpp4,0;-4106;16386,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,6,13482,ENSMUSG00000035000,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24428,cg13250432,0.00000517,0.00000819,0.630933292,0.528549026,gain,ns,-0.00000149,0.0000139,-0.10722868,0.914676925,neg,ns,-0.001930328,0.004076818,-0.473488785,0.63619776,neg,ns,0.196407865,0.00017369,0.000140201,1.23886155,0.216333975,pos,ns,0.656951657,Ano2,Ano2_Intron,6,125803570,125803619,125803570,125803571,50,-,CGTCAAGACAATTTGGTGATGGGTAAATATAGTCTCTGTTAAATGCACCG,"Intron (Ano2-201/Ano2, intron 7 of 15)",6,125690419,125957021,266603,1,Ano2-201,113151,Ano2-201;Ano2-204;Ano2-206,Ano2;Ano2;Ano2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,243634,ENSMUSG00000038115,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7586,cg26729237,-0.00000709,0.0000141,-0.502864055,0.615416919,loss,ns,-0.00000257,0.0000239,-0.107189544,0.914707947,neg,ns,0.026576825,0.007015086,3.788524568,0.000182031,pos,ns,3.739854746,-0.000689806,0.000241248,-2.859319413,0.00453337,neg,ns,0.256635884,Zbtb20,Zbtb20_Intron,16,43335476,43335525,43335476,43335477,50,-,CGGAAAGTTAGAATTAGAATATTCTTCAAGCTGTTGCTGAATAATGAAGG,"Intron (Zbtb20-209/Zbtb20, intron 7 of 7)",16,42875881,43463175,587295,1,Zbtb20-209,459595,Zbtb20-209;Zbtb20-211;Zbtb20-217;Zbtb20-218;Zbtb20-204;Zbtb20-215;Zbtb20-201;Zbtb20-203,Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,98,56490,ENSMUSG00000022708,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26664,cg15148708,-0.0000106,0.00000328,-3.231984986,0.001361608,loss,ns,0.000000596,0.00000557,0.107071056,0.914801868,pos,ns,-0.001342985,0.001630503,-0.823662981,0.410764292,neg,ns,0.386407317,-0.0000031,0.0000561,-0.055265317,0.955962694,neg,ns,0.94163206,Rpsa-ps10,Rpsa-ps10_Intergenic_upstream,3,150279225,150279274,150279225,150279226,50,+,CGAAGGGCCCAATTAGCCAACATGTGAATGTAATTATAACTCTTGATTTT,Distal Intergenic,3,150072658,150073542,885,2,Rpsa-ps10-201,-205683,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,2,100040633,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
37,cg08665685,0.0000173,0.00000482,3.591805655,0.000381735,gain,ns,-0.000000876,0.0000082,-0.1068755,0.914956881,neg,ns,0.003489886,0.002401057,1.45347871,0.147102454,pos,ns,0.832380084,-0.0000361,0.0000826,-0.436842332,0.662529819,neg,ns,0.112785156,Smtn,Smtn_threeUTR,11,3517731,3517780,3517731,3517732,50,+,CGACTGCACATAGGTGAAGACACACTTGGGGTCAGGCTTCTTGCCCATGA,3' UTR,11,3517523,3527937,10415,2,Smtn-201,10157,Selenom-202;Selenom-203;Selenom-201;Smtn-201;Smtn-204;Smtn-203;Smtn-208;Smtn-202;Smtn-210;Smtn-206,Selenom;Selenom;Selenom;Smtn;Smtn;Smtn;Smtn;Smtn;Smtn;Smtn,3047;3029;2864;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,6,29856,ENSMUSG00000020439,conserved gene and region,11,3517523,3517764,242,*,242,18,0.599173554,0.893355209,0.074380165,9.71E-12,CpGisland,TRUE,U3,Pr-B
18836,cg17115246,-0.0000171,0.00000935,-1.833649115,0.067664696,loss,ns,-0.0000017,0.0000159,-0.106850193,0.914976942,neg,ns,-0.00489646,0.004654574,-1.051967398,0.293633813,neg,ns,0.532193936,-0.000186117,0.00016007,-1.162722092,0.245836558,neg,ns,0.805237662,Lrrc4c,Lrrc4c_Exon,2,97629610,97629659,97629658,97629659,50,+,GAAGGTCTGTCCAACTTGAGGTATTTGAACCTTGCCATGTGCAACCTTCG,"Exon (Lrrc4c-202/Lrrc4c, exon 7 of 7)",2,96318169,97631666,1313498,1,Lrrc4c-202,1311441,Lrrc4c-202;Lrrc4c-203;Lrrc4c-201;Lrrc4c-204,Lrrc4c;Lrrc4c;Lrrc4c;Lrrc4c,0;0;0;161521,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,241568,ENSMUSG00000050587,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1869,cg04130555,0.00000106,0.00000153,0.696461141,0.486661957,gain,ns,-0.000000277,0.00000259,-0.106740847,0.915063619,neg,ns,0.003328721,0.000759914,4.380390412,0.0000162,pos,ns,4.789745537,-0.000052,0.0000261,-1.990961569,0.047362675,neg,ns,0.964448017,Chd1,Chd1_threeUTR,17,15770767,15770816,15770815,15770816,50,+,TTCATTTCCAAAGCTACTTGTTTACATTGTACACTGCGACCACCTTGCCG,3' UTR,17,15704967,15772610,67644,1,Chd1-201,65800,Chd1-201,Chd1,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,2,12648,ENSMUSG00000023852,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
599,cg02034167,-0.0000646,0.0000106,-6.085144406,3.43E-09,loss,yes,0.00000192,0.000018,0.106666173,0.915122813,pos,ns,-0.012782208,0.005282245,-2.419843802,0.016102082,neg,ns,1.793117971,0.000129694,0.000181656,0.713952625,0.475793668,pos,ns,0.805938105,Rbfox1,Rbfox1_Intron,16,7149429,7149478,7149477,7149478,50,-,TATTTCGGTTGCCTTTTTCATTATAGGTTCGGGAAATAGGCAGCAATTCG,"Intron (Rbfox1-205/Rbfox1, intron 4 of 11)",16,5885355,7353045,1467691,1,Rbfox1-205,1264074,Rbfox1-205;Rbfox1-201;Rbfox1-202;Rbfox1-203,Rbfox1;Rbfox1;Rbfox1;Rbfox1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,35,268859,ENSMUSG00000008658,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6099,cg18742227,0.0000191,0.00000525,3.63223242,0.000328697,gain,ns,-0.000000951,0.00000892,-0.106588581,0.915184321,neg,ns,-0.000444427,0.002612999,-0.170083024,0.865055788,neg,ns,0.062955884,0.0000256,0.0000899,0.285326309,0.775584698,pos,ns,0.718576112,Nrg2,Nrg2_Exon,18,36032345,36032394,36032393,36032394,50,+,GATCTGGCATGTACAATCGCAAAGGCAGTTTCTCCAAACATCTCTGTCCG,"Exon (Nrg2-203/Nrg2, exon 5 of 10)",18,36017652,36197380,179729,2,Nrg2-203,164986,Nrg2-203;Nrg2-206;Nrg2-202;Nrg2-205;Nrg2-204;Nrg2-201,Nrg2;Nrg2;Nrg2;Nrg2;Nrg2;Nrg2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,20,100042150,ENSMUSG00000060275,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3396,cg09217748,-0.00000272,0.00000135,-2.013984382,0.044874786,loss,ns,0.000000244,0.00000229,0.106561719,0.915205615,pos,ns,-0.000164014,0.000671896,-0.244106593,0.807309744,neg,ns,0.092959806,0.0000278,0.0000231,1.201180818,0.230597998,pos,ns,0.035260714,Bcl6,Bcl6_Promoter,16,23988936,23988985,23988984,23988985,50,+,GCTGTAGCAAAGCTCGGCCTCTGGAATTCTGAGAACTAATTTGCTATTCG,Promoter (<=1kb),16,23965052,23988852,23801,2,Bcl6-201,-84,Bcl6-201;Gm37419-201,Bcl6;Gm37419,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,7,18,12053,ENSMUSG00000022508,conserved gene but different region,16,23988657,23989142,486,*,486,53,0.639917696,1.065348664,0.109053498,1.22E-42,CpGisland,TRUE,U1,Pr-A
19718,cg16004720,-0.0000553,0.00000701,-7.891916349,5.17E-14,loss,yes,0.00000127,0.0000119,0.106556782,0.915209528,pos,ns,-0.008641473,0.003488649,-2.477025733,0.013781256,neg,ns,1.860711184,0.000121338,0.000119974,1.011368671,0.312628742,pos,ns,0.869267297,Dglucy,Dglucy_Exon,12,100878571,100878620,100878619,100878620,50,-,AGGAAGATGACCACGGTGCTGAGCACCAGCCGCTGGATCTGGTCCTTGCG,"Exon (Gpr68-203/Gpr68, exon 3 of 3)",12,100779086,100896981,117896,1,Dglucy-203,99485,Dglucy-203;Dglucy-205;Gpr68-203;Gpr68-201;Gpr68-202;Gpr68-206,Dglucy;Dglucy;Gpr68;Gpr68;Gpr68;Gpr68,0;11382;0;0;0;20878,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,217830,ENSMUSG00000021185,mapped to different genes,12,100878532,100878656,125,*,125,9,0.632,0.723938224,0.072,0.00000584,CpGisland,TRUE,U15,NS
15146,cg27495216,0.00000764,0.00000685,1.115165738,0.265643154,gain,ns,0.00000124,0.0000116,0.106504263,0.915251161,pos,ns,-0.003806526,0.003407951,-1.116954634,0.264878668,neg,ns,0.576953017,0.000166323,0.000117199,1.419145916,0.156861158,pos,ns,0.095831837,Cerkl,Cerkl_Exon,2,79453978,79454027,79454026,79454027,50,-,TGGCATTGAGCTGGGCACTCATGACTCGCTCATGATGTGAATGGCTATCG,"Exon (Neurod1-201/Neurod1, exon 2 of 2)",2,79338569,79456785,118217,2,Cerkl-210,2758,Cerkl-210;Neurod1-201,Cerkl;Neurod1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,15,228094,ENSMUSG00000075256,conserved gene and region,2,79453919,79454121,203,*,203,15,0.541871921,1.034307065,0.073891626,8.05E-10,CpGisland,TRUE,U3,Pr-B
854,cg06321508,-0.0000184,0.00000757,-2.436303697,0.015400998,loss,ns,0.00000137,0.0000129,0.1064768,0.915272932,pos,ns,0.001728707,0.00376828,0.458752232,0.646733567,pos,ns,0.189274597,-0.000354859,0.000129591,-2.738304051,0.006532752,neg,ns,0.76099943,Ttc32,Ttc32_Intergenic_downstream,12,9128585,9128634,9128633,9128634,50,+,ATAGGTTGACTCAAAACAGATTTCACAATCACTTTATCCAATTTTGGACG,Distal Intergenic,12,9030028,9036397,6370,1,Ttc32-202,98557,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,4,75516,ENSMUSG00000066637,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27920,cg16148983,-0.00000537,0.00000641,-0.837767518,0.402806719,loss,ns,-0.00000116,0.0000109,-0.106465523,0.915281871,neg,ns,-0.002945527,0.003189609,-0.923475936,0.356477457,neg,ns,0.447967929,-0.000019,0.00010969,-0.173574079,0.862313489,neg,ns,0.814780833,Prox1,Prox1_Intergenic_upstream,1,190354314,190354363,190354314,190354315,50,-,CGGTACCAGACACAGAAACCAAAGTAGGTTGTCTTGTCTTCAGCGAATCT,Distal Intergenic,1,190118035,190170714,52680,2,Prox1-202,-183649,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,13,59,19130,ENSMUSG00000010175,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17521,cg20427496,-0.0000152,0.000009,-1.687101546,0.092589742,loss,ns,0.00000163,0.0000153,0.10637409,0.915354352,pos,ns,-0.001882877,0.00447945,-0.420336649,0.67453075,neg,ns,0.170998247,-0.0000733,0.000154048,-0.475654744,0.634655369,neg,ns,0.890335979,Nrxn1,Nrxn1_Exon,17,90700734,90700783,90700734,90700735,50,+,CGATATTTACCTCTTTGAGACAGCCCATAAAGTTGTTACTGACTGGTGAC,Promoter (<=1kb),17,90590194,90700774,110581,2,Nrxn1-224,0,Nrxn1-202;Nrxn1-207;Nrxn1-216;Nrxn1-209;Nrxn1-201;Nrxn1-206;Nrxn1-208;Nrxn1-210;Nrxn1-224;Nrxn1-205;Nrxn1-203,Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,22,27,18189,ENSMUSG00000024109,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17262,cg23309030,-0.0000471,0.0000124,-3.798090519,0.00017545,loss,ns,0.00000224,0.0000211,0.106322641,0.915395138,pos,ns,-0.015074509,0.006174529,-2.441402494,0.015189369,neg,ns,1.818460257,0.000310702,0.000212342,1.463219309,0.144420539,pos,ns,0.695930857,Nog,Nog_Intergenic_upstream,11,89327573,89327622,89327621,89327622,50,-,TAATGTGCTTAATGGGCACTCAAGGCAGTTTAAAGATCTTAGCCTTTGCG,Distal Intergenic,11,89300638,89302332,1695,2,Nog-201,-25290,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,36,18121,ENSMUSG00000048616,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24435,cg26869371,-0.0000112,0.00000527,-2.124050959,0.034457301,loss,ns,0.000000952,0.00000895,0.106321043,0.915396405,pos,ns,0.002732717,0.002623109,1.04178549,0.298322917,pos,ns,0.525313382,-0.0000383,0.0000902,-0.424139463,0.67175828,neg,ns,0.552842728,Fam227b,Fam227b_fiveUTR,2,126035698,126035747,126035698,126035699,50,-,CGGAGCACTACACTATAATGCACAAATGGATACTGACATGGATCCTGCCA,5' UTR,2,125983483,126152004,168522,2,Fam227b-201,116257,Fam227b-201;Fam227b-204;Fam227b-202;Fam227b-203;Fgf7-203;Fgf7-201;Fgf7-202,Fam227b;Fam227b;Fam227b;Fam227b;Fgf7;Fgf7;Fgf7,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,1,75823,ENSMUSG00000027209,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15392,cg10743840,-0.0000272,0.00000882,-3.080561774,0.002251277,loss,ns,0.00000159,0.000015,0.10629657,0.915415805,pos,ns,-0.003402246,0.004391785,-0.774683912,0.439116925,neg,ns,0.357419823,0.000144338,0.000151033,0.955673162,0.339982033,pos,ns,0.830239589,Gria2,Gria2_threeUTR,3,80690475,80690524,80690475,80690476,50,+,CGCCTTGCTCACTGAGTTTCAATACTGCAAGATTTACTGGGGTTCTTCAC,3' UTR,3,80681450,80802835,121386,2,Gria2-201,112311,Gria2-201;Gria2-202;Gria2-203;Gria2-206,Gria2;Gria2;Gria2;Gria2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,12,19,14800,ENSMUSG00000033981,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12575,cg08651129,-0.0000153,0.00000208,-7.388449537,1.39E-12,loss,yes,0.000000375,0.00000353,0.106209805,0.915484587,pos,ns,0.001481209,0.001033641,1.433001517,0.1528651,pos,ns,0.815691655,-0.0000619,0.0000355,-1.742476929,0.082416697,neg,ns,0.955878769,Tjp1,Tjp1_Exon,7,65314959,65315008,65315007,65315008,50,-,GGACAGACGATCATCATGCAAATCAAGGTCATCACTTGTAGCACCATCCG,"Exon (Tjp1-202/Tjp1, exon 19 of 28)",7,65296165,65371239,75075,2,Tjp1-202,56231,Tjp1-202;Tjp1-201;Tjp1-207,Tjp1;Tjp1;Tjp1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,13,21872,ENSMUSG00000030516,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14917,cg26632416,-6.08E-08,0.00000335,-0.018161389,0.985521788,loss,ns,0.000000604,0.00000569,0.106167729,0.915517943,pos,ns,0.00022502,0.001666174,0.135052148,0.89265829,pos,ns,0.049314758,-0.0000872,0.0000573,-1.522528414,0.128896127,neg,ns,0.943230067,Fam222b,Fam222b_Exon,11,78154546,78154595,78154546,78154547,50,+,CGACCCACAGCGTCCCCACACCAATGCCTTCATGTGTGGTCAATCCCATG,"Exon (Fam222b-201/Fam222b, exon 3 of 3)",11,78094660,78156700,62041,1,Fam222b-201,59886,Fam222b-201;Fam222b-202;Fam222b-203;Traf4-203;Traf4-201,Fam222b;Fam222b;Fam222b;Traf4;Traf4,0;0;0;10994;10994,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,21,216971,ENSMUSG00000037750,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22449,cg25728325,-0.00000361,0.00000344,-1.049705915,0.294670984,loss,ns,-0.00000062,0.00000584,-0.106079255,0.915588081,neg,ns,-0.0006004,0.001711572,-0.350788651,0.725985171,neg,ns,0.13907225,0.0000789,0.0000589,1.339706999,0.181321879,pos,ns,0.92382824,Dph6,Dph6_Intron,2,114580691,114580740,114580739,114580740,50,-,TTTCCCAAGCTACTGCTCCTTAAGATAACCCTCTCCCTATGGTCCTTCCG,"Intron (Dph6-201/Dph6, intron 3 of 7)",2,114516416,114654953,138538,2,Dph6-201,74213,Dph6-201;Dph6-203;Dph6-202;Dph6-206,Dph6;Dph6;Dph6;Dph6,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,10,66632,ENSMUSG00000057147,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13670,cg15534660,0.0000359,0.00000721,4.979327531,0.00000106,gain,yes,-0.0000013,0.0000122,-0.106032394,0.91562523,neg,ns,0.017731597,0.003588735,4.940904232,0.00000127,pos,ns,5.894658018,-0.0000724,0.000123416,-0.586787375,0.557773585,neg,ns,0.3362746,Tcf12,Tcf12_Intron,9,71976149,71976198,71976197,71976198,50,+,TGCAGACCAGATGGGAACATTCCACATGACCAAACCAATCAATCACCTCG,"Intron (Tcf12-202/Tcf12, intron 5 of 20)",9,71842688,72111847,269160,2,Tcf12-202,135649,Tcf12-202;Tcf12-201;Tcf12-220;Tcf12-221;Tcf12-218;Tcf12-216;Tcf12-208;Tcf12-210;Tcf12-214;Tcf12-205;Tcf12-203;Tcf12-211;Tcf12-204;Tcf12-212,Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,12,21406,ENSMUSG00000032228,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13599,cg09269677,0.0000198,0.00000404,4.915024009,0.00000144,gain,yes,0.000000727,0.00000686,0.105980709,0.915666203,pos,ns,0.003073202,0.002009664,1.529212037,0.127231612,pos,ns,0.895404969,0.000047,0.0000691,0.680343379,0.496794849,pos,ns,0.075737355,Dlx1,Dlx1_fiveUTR,2,71528069,71528118,71528069,71528070,50,-,CGATGTAATTTGTTTTGAATGTTCATTTTTATTGGTGTTCCCTCTGCCAA,Promoter (<=1kb),2,71528113,71533980,5868,1,Dlx1-201,0,Dlx1-201;Dlx1-202;Dlx1-205;Dlx1-204;Dlx1-203;Dlx1-206;Metap1d-201;Metap1d-205;Metap1d-203,Dlx1;Dlx1;Dlx1;Dlx1;Dlx1;Dlx1;Metap1d;Metap1d;Metap1d,0;0;0;0;0;-2662;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,12,36,13390,ENSMUSG00000041911,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
2329,cg02569533,0.0000069,0.00000259,2.658759526,0.008250092,gain,ns,0.000000467,0.00000441,0.105940661,0.915697952,pos,ns,0.001970518,0.001291474,1.525790259,0.128081673,pos,ns,0.892513007,-0.0000757,0.0000444,-1.703548159,0.089467703,neg,ns,0.055688218,Meis1,Meis1_fiveUTR,11,19018957,19019006,19018957,19018958,50,-,CGACCAGAATGCTAGAACCCGGAAGTAGTGGTGGCCATAACAGGTCGCGT,Promoter (<=1kb),11,18879817,19018985,139169,2,Meis1-206,0,Meis1-206;Meis1-202;Meis1-209;Meis1-201;Meis1-208;Meis1-207;Meis1-204;Meis1-205,Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,7,88,17268,ENSMUSG00000020160,conserved gene and region,11,19018885,19019116,232,*,232,18,0.590517241,0.911392405,0.077586207,4.67E-12,CpGisland,TRUE,U1,Pr-A
20643,cg04483487,0.00000698,0.00000253,2.757285176,0.006173969,gain,ns,-0.000000455,0.0000043,-0.105687698,0.915898495,neg,ns,0.00593672,0.001260663,4.709202891,0.00000376,pos,ns,5.425149473,-0.000221481,0.0000434,-5.108639987,0.000000568,neg,yes,0.040722954,Adamts6,Adamts6_Promoter,13,104288624,104288673,104288624,104288625,50,-,CGTTTGGGCCAGATGCCAACTGTCTGGGTCACACGCGTTTTATCCAAATA,Promoter (<=1kb),13,104287835,104496695,208861,1,Adamts6-207,789,Adamts6-207;Adamts6-202;Adamts6-201;Adamts6-206,Adamts6;Adamts6;Adamts6;Adamts6,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,6,31,108154,ENSMUSG00000046169,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
9373,cg01509444,0.00000295,0.00000336,0.877482506,0.380904146,gain,ns,0.000000602,0.00000571,0.105548036,0.916009218,pos,ns,0.002134605,0.001671941,1.276722448,0.20265579,pos,ns,0.693240983,-0.000109,0.0000575,-1.895723404,0.058926525,neg,ns,0.941311654,Tmem260,Tmem260_fiveUTR,14,48451159,48451208,48451159,48451160,50,-,CGCACATGAGCTTGGAGTAAGTATTAGTTTTATTGTTTAATCAATGCTCT,5' UTR,14,48446124,48520368,74245,1,Tmem260-210,5035,Tmem260-210;Tmem260-202;Tmem260-209;Tmem260-208;Tmem260-203;Tmem260-201;Tmem260-204;Tmem260-205;Tmem260-211,Tmem260;Tmem260;Tmem260;Tmem260;Tmem260;Tmem260;Tmem260;Tmem260;Tmem260,0;0;0;4862;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,11,218989,ENSMUSG00000036339,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1615,cg21608575,-0.0000506,0.00000897,-5.635114294,3.93E-08,loss,yes,0.00000161,0.0000152,0.105443729,0.916091913,pos,ns,-0.008932855,0.004465056,-2.00061432,0.046305739,neg,ns,1.334365182,-0.000256193,0.000153553,-1.66843654,0.096238753,neg,ns,0.797414944,Runx1t1,Runx1t1_Exon,4,13859818,13859867,13859866,13859867,50,-,GAAAATGGCTTTGACAGAGAGCCTTTGCACTCAGAACATCCAAGCAAGCG,"Exon (Runx1t1-201/Runx1t1, exon 6 of 11)",4,13743436,13893649,150214,1,Runx1t1-201,116382,Runx1t1-201;Runx1t1-204;Runx1t1-203;Runx1t1-202,Runx1t1;Runx1t1;Runx1t1;Runx1t1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,24,12395,ENSMUSG00000006586,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21712,cg08844333,-0.00000169,0.00000104,-1.616311855,0.107044064,loss,ns,0.000000187,0.00000177,0.10544172,0.916093506,pos,ns,-0.0000209,0.000519329,-0.040295302,0.967883638,neg,ns,0.014176852,0.0000108,0.0000179,0.604012156,0.546277314,pos,ns,0.031174645,Prpf38b,Prpf38b_Exon,3,108911178,108911227,108911178,108911179,50,+,CGTCCACCACCTCGTGGTAGGTCTTGAGCTCGTAGAGCTGTACTTTGAAG,Promoter (<=1kb),3,108902805,108911696,8892,2,Prpf38b-204,469,Prpf38b-204;Prpf38b-201;Prpf38b-208;Prpf38b-206;Prpf38b-205;Prpf38b-207,Prpf38b;Prpf38b;Prpf38b;Prpf38b;Prpf38b;Prpf38b,0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,13,66921,ENSMUSG00000027881,conserved gene but different region,3,108910989,108911237,249,*,249,19,0.614457831,0.838532435,0.076305221,1.44E-12,CpGisland,TRUE,U1,Pr-A
5264,cg05190315,0.0000366,0.0000046,7.949152763,3.52E-14,gain,yes,0.000000823,0.00000781,0.105320097,0.91618993,pos,ns,0.003022678,0.002288767,1.320657404,0.187589751,pos,ns,0.726790894,0.0000174,0.0000787,0.221616522,0.824758334,pos,ns,0.067431771,Tlx3,Tlx3_Promoter,11,33203696,33203745,33203696,33203697,50,-,CGGCTTTCAATAAAGGCCTAATTCATGGAAATAGGAGCTTAGGGACTGTT,Promoter (<=1kb),11,33200752,33203589,2838,2,Tlx3-201,-156,Tlx3-201,Tlx3,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,4,20,27140,ENSMUSG00000040610,conserved gene and region,11,33202715,33203697,983,*,983,96,0.695829095,0.806819251,0.097660224,1.02E-71,CpGisland,TRUE,NA,NRS
7191,cg07328516,0.0000214,0.0000176,1.212514029,0.226238907,gain,ns,0.00000315,0.00003,0.105156555,0.916319591,pos,ns,-0.005646043,0.008779167,-0.643118374,0.520622709,neg,ns,0.283476893,0.000747596,0.000301915,2.476182241,0.013813211,pos,ns,0.432286753,Gm48736,Gm48736_Exon,9,41581955,41582004,41582003,41582004,50,+,CTTGTGATGTTTACCGTTTAAATCCACGGGTTAGGCTCTTGGGAGCTGCG,"Exon (Gm28119-201/Gm28119-201, exon 1 of 2)",9,41513525,41513780,256,2,Gm48736-201,-68175,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
2521,cg09068198,-0.00000377,0.00000181,-2.082987914,0.038071624,loss,ns,0.000000323,0.00000307,0.105099919,0.916364493,pos,ns,0.000329486,0.000900707,0.365807635,0.714758116,pos,ns,0.145840905,-0.000022,0.000031,-0.709828159,0.478344283,neg,ns,0.113401548,Rab1a,Rab1a_fiveUTR,11,20201614,20201663,20201614,20201615,50,+,CGGCAGCTGCAGTGACATGTCCAGCATGAATCCCGAATAGTGAGTTCAGG,Promoter (<=1kb),11,20201432,20226856,25425,1,Rab1a-201,182,Rab1a-201;Rab1a-203;Rab1a-204;Rab1a-202;Rab1a-206;Rab1a-205,Rab1a;Rab1a;Rab1a;Rab1a;Rab1a;Rab1a,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,3,19324,ENSMUSG00000020149,conserved gene and region,11,20201557,20201939,383,*,383,46,0.751958225,0.93712766,0.120104439,3.19E-39,CpGisland,TRUE,U1,Pr-A
3982,cg16118197,0.0000033,0.00000359,0.920306372,0.358128269,gain,ns,-0.00000064,0.00000609,-0.105056176,0.916399174,neg,ns,0.002625492,0.001785042,1.470829552,0.142351512,pos,ns,0.846637917,-0.000116057,0.0000614,-1.890572525,0.059613883,neg,ns,0.838360847,Axin1,Axin1_Promoter,17,26131192,26131241,26131192,26131193,50,+,CGGTGTCTAAAGGGGCTGGTTGCCATGGCTACCATAGGGTTCTGAGGCCC,Promoter (7-8kb),17,26138688,26195811,57124,1,Axin1-201,-7447,Mrpl28-201;Mrpl28-205;Mrpl28-204;Mrpl28-206;Mrpl28-203,Mrpl28;Mrpl28;Mrpl28;Mrpl28;Mrpl28,7692;7692;7672;7672;7648,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,1,12005,ENSMUSG00000024182,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22483,cg02486904,0.0000388,0.00000575,6.740015513,7.73E-11,gain,yes,0.00000103,0.00000977,0.104974513,0.916463921,pos,ns,0.008947878,0.002862596,3.125790965,0.00194123,pos,ns,2.711922896,-0.000155758,0.0000984,-1.582195629,0.11462459,neg,ns,0.140956588,Gm12830,Gm12830_Exon,4,114821860,114821909,114821908,114821909,50,+,AGAAAGTAAAAACACAGCTGACTCCCATTAGGGCCCTCTCACAGGCTCCG,Promoter (<=1kb),4,114821722,114856166,34445,1,Gm12830-201,138,Gm12830-201,Gm12830,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,26,433746,ENSMUSG00000055198,mapped to different genes,4,114821908,114822167,260,*,260,26,0.676923077,0.936936937,0.1,4.14E-20,CpGisland,TRUE,U3,Pr-B
7069,cg09486418,0.0000921,0.00000769,11.97162275,2.10E-27,gain,yes,-0.00000137,0.0000131,-0.10481966,0.916586696,neg,ns,0.007380534,0.003827965,1.928056961,0.054761216,pos,ns,1.261526914,0.000130462,0.000131643,0.991025635,0.322445957,pos,ns,0.16818341,Tfap2a,Tfap2a_fiveUTR,13,40738277,40738326,40738325,40738326,50,-,TCACCAACATCTCACCTGGTCATAAAGAGCTGGGTTGCTACCTGCCGACG,Promoter (<=1kb),13,40716605,40738376,21772,2,Tfap2a-203,50,Tfap2a-202;Tfap2a-203;Tfap2a-208;Tfap2a-206;Tfap2a-204,Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,6,57,21418,ENSMUSG00000021359,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
9859,cg09734589,-0.00000334,0.00000197,-1.692118835,0.091628134,loss,ns,-0.000000351,0.00000335,-0.104783351,0.916615484,neg,ns,-0.000154732,0.00098231,-0.157518726,0.874938599,neg,ns,0.058022424,-0.0000543,0.0000338,-1.607185585,0.109031683,neg,ns,0.953213926,Gm40319,Gm40319_Intergenic_downstream,5,51228050,51228099,51228050,51228051,50,-,CGGAATTGTCATCAATGATGACTTTGACAAAATGAGCAATACATAATTTG,Distal Intergenic,5,51052381,51052861,481,1,Gm40319-201,175718,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,105244767,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22202,cg01556209,0.0000151,0.00000399,3.786310248,0.000183587,gain,ns,0.000000711,0.00000678,0.104725017,0.916661735,pos,ns,0.001501133,0.001987622,0.755240735,0.450677968,pos,ns,0.346133672,-0.0000707,0.0000684,-1.033705567,0.302079562,neg,ns,0.076371552,Gm26897,Gm26897_Intergenic_downstream,5,111762097,111762146,111762097,111762098,50,+,CGCTAATTATTCCCTTACTGCCACTGCTGTTCTGGCTTTGGACGCATTGC,Distal Intergenic,5,111733924,111734574,651,1,Gm26897-201,28173,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,11,23,,NA,mapped to different genes,5,111762139,111762211,73,*,73,10,0.671232877,1.280701754,0.136986301,2.44E-09,CpGisland,TRUE,NA,NRS
7352,cg16021982,-0.00000903,0.00000355,-2.544395504,0.01143155,loss,ns,0.000000631,0.00000603,0.104685627,0.916692966,pos,ns,-0.003594331,0.001767104,-2.034023162,0.042800372,neg,ns,1.368552455,0.000128041,0.0000608,2.106964479,0.035923798,pos,ns,0.928109444,Afg1l,Afg1l_Intron,10,42383324,42383373,42383372,42383373,50,+,TTATTACTGTCAGCTCTTATCTTGATCAGCATTTTAATAAAGATGGTTCG,"Intron (Afg1l-204/Afg1l, intron 5 of 10)",10,42312585,42478280,165696,2,Afg1l-204,94907,Afg1l-204;Afg1l-201;Afg1l-202;Afg1l-203,Afg1l;Afg1l;Afg1l;Afg1l,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,6,215951,ENSMUSG00000038302,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13616,cg11381542,0.000101764,0.0000142,7.174022206,5.39E-12,gain,yes,-0.00000252,0.0000241,-0.104577196,0.916778939,neg,ns,0.019581339,0.007060057,2.773538513,0.005881021,pos,ns,2.230547249,0.0000142,0.000242795,0.05868004,0.953244765,pos,ns,0.523690403,Dlx1,Dlx1_Intron,2,71536049,71536098,71536049,71536050,50,-,CGTACAGCTGCAAACCCAAGAGGGTCAGCATCATTTCACTGTATTCTCTT,"Intron (Dlx1as-204/Dlx1as-204, intron 1 of 1)",2,71530780,71532689,1910,1,Dlx1-206,5318,Dlx1-201;Dlx1-204;Dlx1-203;Dlx1-206,Dlx1;Dlx1;Dlx1;Dlx1,0;0;0;5269,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,36,13390,ENSMUSG00000041911,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
15652,cg15187227,0.0000243,0.00000374,6.489894288,3.40E-10,gain,yes,0.000000663,0.00000636,0.104285789,0.917009992,pos,ns,0.005545965,0.00186232,2.977987031,0.003130398,pos,ns,2.504400408,-0.000148409,0.000064,-2.317266274,0.021140418,neg,ns,0.067787257,Nfib,Nfib_fiveUTR,4,82504902,82504951,82504950,82504951,50,-,TCACAACAAACCCAGTCCTCCTTAAATAGCCAAAGATTCAAGTTCACTCG,Promoter (<=1kb),4,82290173,82505308,215136,2,Nfib-201,357,Nfib-201;Nfib-203;Nfib-202;Nfib-205;Nfib-206;Nfib-204;Nfib-207;Nfib-209;Nfib-210;Nfib-208;Nfib-212,Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib;Nfib,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,66,18028,ENSMUSG00000008575,conserved gene and region,4,82504950,82505063,114,*,114,14,0.649122807,1.166666667,0.122807018,2.66E-12,CpGisland,TRUE,U1,Pr-A
23768,cg18434381,0.00000189,0.000000455,4.146595908,0.0000436,gain,ns,-8.06E-08,0.000000773,-0.1042781,0.91701609,neg,ns,0.000397575,0.000226362,1.756363675,0.080013716,pos,ns,1.096835559,-0.00000787,0.00000778,-1.011268481,0.312676602,neg,ns,0.009306995,Foxo6,Foxo6_Exon,4,120286875,120286924,120286923,120286924,50,-,CTTGAAGTAGGGCACGTAACGGACCATCCAGTCGTAGATCTGCGAGAGCG,Promoter (<=1kb),4,120267079,120287349,20271,2,Foxo6-201,425,Foxo6-201,Foxo6,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,42,329934,ENSMUSG00000052135,conserved gene and region,4,120286820,120288190,1371,*,1371,160,0.728665208,0.879452187,0.116703136,1.00E-132,CpGisland,TRUE,U3,Pr-B
21151,cg18407591,-0.0000115,0.00000818,-1.408776303,0.159903534,loss,ns,-0.00000145,0.0000139,-0.104255458,0.917034042,neg,ns,-0.005945347,0.004071593,-1.460201735,0.145247322,neg,ns,0.837891866,-0.000190475,0.000140022,-1.360323713,0.174715831,neg,ns,0.825870164,Gm17304,Gm17304_Intron,5,106565546,106565595,106565594,106565595,50,+,AGAATTAATCCTCTTGGTCTAAACTGGCTTCAACTTTGAAGCTTGCTCCG,"Intron (Gm28050-202/Gm28050-202, intron 1 of 2)",5,106609098,106609201,104,1,Gm17304-201,-43503,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,35,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14295,cg07145843,0.0000164,0.00000815,2.01376432,0.044898032,gain,ns,-0.00000144,0.0000138,-0.104224054,0.917058943,neg,ns,0.012449389,0.004056044,3.069342309,0.002334942,pos,ns,2.631723821,-0.000507167,0.000139487,-3.635941849,0.000324195,neg,ns,0.072889209,Pcsk1,Pcsk1_fiveUTR,13,75089782,75089831,75089782,75089783,50,+,CGTCAAGAGATGGCTTTCGTCGATTTGACGTGTAAACACTCATTTCCATT,Promoter (<=1kb),13,75089826,75134861,45036,1,Pcsk1-201,0,Pcsk1-201;Pcsk1-202,Pcsk1;Pcsk1,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,3,18548,ENSMUSG00000021587,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21250,cg13656045,-0.00000977,0.0000062,-1.57583542,0.116083664,loss,ns,-0.0000011,0.0000105,-0.104182571,0.917091835,neg,ns,0.000917154,0.003085362,0.297259902,0.766467184,pos,ns,0.115506435,-0.000266516,0.000106105,-2.511804027,0.012519541,neg,ns,0.903289693,Dock3,Dock3_Exon,9,106986022,106986071,106986022,106986023,50,-,CGAATCAGTTCTGCTGAGCAGTCCATATACCACTTCAAACAGCGGATGAG,"Exon (Dock3-201/Dock3, exon 22 of 53)",9,106892825,107231909,339085,2,Dock3-201,245838,Dock3-201,Dock3,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,9,208869,ENSMUSG00000039716,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22036,cg14115130,0.000033,0.00000621,5.320973381,0.000000198,gain,yes,-0.0000011,0.0000106,-0.104153221,0.917115107,neg,ns,0.012651893,0.003090969,4.093179675,0.0000543,pos,ns,4.265000739,-0.000279559,0.000106298,-2.629949371,0.008965947,neg,ns,0.100483416,Elavl4,Elavl4_Intron,4,110285556,110285605,110285604,110285605,50,+,ACCTTTCATTGGGTTTTCCTCCCAGCTATCGCTTTCAGTTGGGCTGCTCG,"Intron (Elavl4-204/Elavl4, intron 1 of 6)",4,110203722,110287527,83806,2,Elavl4-204,1922,Elavl4-204;Elavl4-201;Elavl4-203;Elavl4-202;Elavl4-205;Elavl4-206;Elavl4-207;Elavl4-208;Elavl4-212;Elavl4-209,Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4;Elavl4,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,36,15572,ENSMUSG00000028546,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14235,cg17500265,0.0000198,0.00000281,7.057610302,1.11E-11,gain,yes,0.000000497,0.00000477,0.104148021,0.917119231,pos,ns,0.006475852,0.001396875,4.63595792,0.00000524,pos,ns,5.280448062,-0.000212859,0.000048,-4.431020257,0.000013,neg,ns,0.077394006,Onecut1,Onecut1_Exon,9,74863129,74863178,74863129,74863130,50,+,CGCAGGTCAGCAATGGAAGTAATTCAGGGCAGATGGAAGAGATCAATACC,"Exon (Onecut1-201/Onecut1, exon 1 of 2)",9,74861921,74891781,29861,1,Onecut1-201,1208,Onecut1-201;Onecut1-202,Onecut1;Onecut1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,16,28,15379,ENSMUSG00000043013,conserved gene and region,9,74862974,74863130,157,*,157,14,0.700636943,0.769607843,0.089171975,2.69E-10,CpGisland,TRUE,U3,Pr-B
5283,cg23717232,0.00000257,0.00000405,0.635524132,0.52555548,gain,ns,-0.000000716,0.00000688,-0.104041074,0.917204031,neg,ns,-0.002852838,0.002015876,-1.415185496,0.158017873,neg,ns,0.80129379,0.0000257,0.0000693,0.37074776,0.711078627,pos,ns,0.918130156,Ranbp17,Ranbp17_Intron,11,33301035,33301084,33301083,33301084,50,+,GAGACACGATCAGCAATAAAGAGCATCTAACTCCATTTTCCTGCAGGGCG,"Intron (Ranbp17-202/Ranbp17, intron 19 of 27)",11,33211795,33513746,301952,2,Ranbp17-202,212662,Ranbp17-202;Ranbp17-206;Ranbp17-203;Ranbp17-205,Ranbp17;Ranbp17;Ranbp17;Ranbp17,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,31,66011,ENSMUSG00000040594,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10711,cg22856020,-0.0000234,0.00000795,-2.947612358,0.003445531,loss,ns,0.0000014,0.0000135,0.104009435,0.917229118,pos,ns,-0.001595745,0.003955646,-0.40340933,0.686925229,neg,ns,0.163090533,-0.000118586,0.000136034,-0.871733656,0.384028323,neg,ns,0.903856911,Zfp608,Zfp608_Promoter,18,54997567,54997616,54997615,54997616,50,-,AGATTTAGGTAATAGCCCTGATTTTTCAAATCGACCTCTGTTTAGACACG,Promoter (5-6kb),18,54888723,54992555,103833,2,Zfp608-203,-5061,NA,NA,NA,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,3,32,269023,ENSMUSG00000052713,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9001,cg26621745,-0.000000551,0.00000053,-1.039675503,0.299300888,loss,ns,9.35E-08,0.0000009,0.103971591,0.917259125,pos,ns,0.000407013,0.000263545,1.544378828,0.123516778,pos,ns,0.908274045,-0.0000148,0.00000906,-1.634914069,0.103082046,neg,ns,0.010518936,Trim8,Trim8_Exon,19,46502860,46502909,46502860,46502861,50,-,CGTGCGGGCCTGGAGCTGCCCGCAGCACAACGCCTACCGCCTCTACCACT,"Exon (Trim8-201/Trim8, exon 1 of 6)",19,46501702,46516848,15147,1,Trim8-201,1158,Trim8-201,Trim8,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,15,21,93679,ENSMUSG00000025034,conserved gene and region,19,46502503,46503142,640,*,640,53,0.6359375,0.821705426,0.0828125,6.38E-36,CpGisland,TRUE,U1,Pr-A
2321,cg22982573,0.000284167,0.000031,9.167828115,6.87E-18,gain,yes,-0.00000547,0.0000527,-0.103888168,0.917325275,neg,ns,-0.006324678,0.015427061,-0.409972948,0.682108961,neg,ns,0.166146245,0.000774413,0.000530535,1.459682857,0.145389856,pos,ns,0.512089932,Meis1,Meis1_Exon,11,19016152,19016201,19016200,19016201,50,-,CTCTCTTTAAAGCGTCATTGACAGAGGAGCCCATGCTGGGGGCCATGGCG,"Exon (Meis1-206/Meis1, exon 2 of 10)",11,18879817,19018985,139169,2,Meis1-206,2784,Meis1-206;Meis1-202;Meis1-209;Meis1-201;Meis1-203;Meis1-208;Meis1-207;Meis1-204;Meis1-205,Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,21,88,17268,ENSMUSG00000020160,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14344,cg09402408,-0.00000786,0.00000382,-2.056734999,0.040548291,loss,ns,-0.000000674,0.00000649,-0.103827033,0.917373751,neg,ns,0.000547334,0.001902814,0.28764422,0.773811288,pos,ns,0.111364939,-0.0000252,0.0000654,-0.385504229,0.700128268,neg,ns,0.891346369,Atg9a,Atg9a_threeUTR,1,75185932,75185981,75185980,75185981,50,-,TAACTCCAACTCCACTCACTGCCTTGTACTGGAAGAGCTGGGCAAACTCG,3' UTR,1,75180860,75191926,11067,2,Atg9a-208,5945,Atg9a-208;Atg9a-209;Atg9a-207;Atg9a-210;Atg9a-205;Atg9a-201;Atg9a-204;Atg9a-206;Atg9a-203;Atg9a-202,Atg9a;Atg9a;Atg9a;Atg9a;Atg9a;Atg9a;Atg9a;Atg9a;Atg9a;Atg9a,0;0;0;0;0;0;0;5744;5981;5733,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,4,245860,ENSMUSG00000033124,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8164,cg15513476,0.000112255,0.0000126,8.892380264,5.04E-17,gain,yes,-0.00000223,0.0000214,-0.103783846,0.917407996,neg,ns,0.020646987,0.006282987,3.286173817,0.001132073,pos,ns,2.946125564,-0.000280924,0.000216071,-1.30014526,0.194517004,neg,ns,0.422333618,Pax2,Pax2_Intron,19,44813585,44813634,44813585,44813586,50,+,CGGCCTCTGCCACCAGATCAGGCAATCAATAGGGGCAGCAGATATCATAT,"Intron (Pax2-203/Pax2, intron 5 of 9)",19,44756045,44837851,81807,1,Pax2-203,57540,Pax2-203;Pax2-201;Pax2-202,Pax2;Pax2;Pax2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,35,166,18504,ENSMUSG00000004231,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8954,cg00238638,0.0000153,0.0000038,4.012829614,0.0000753,gain,ns,-0.00000067,0.00000646,-0.103721499,0.917457434,neg,ns,0.002061625,0.001893223,1.088949771,0.277021851,pos,ns,0.557485973,-0.0000211,0.0000651,-0.324050676,0.746118195,neg,ns,0.835770726,4931429L15Rik,4931429L15Rik_Intergenic_upstream,9,46411818,46411867,46411818,46411819,50,+,CGACAAGTGGCAGTTCATTAAAAAGTGGGAGCAGATGGGGAATGGATTGT,Distal Intergenic,9,46303361,46319986,16626,2,4931429L15Rik-201,-91832,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,12,22,74361,ENSMUSG00000056617,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4281,cg10294836,-0.0000148,0.00000438,-3.384740185,0.000804089,loss,ns,0.00000077,0.00000743,0.103569001,0.917578359,pos,ns,-0.001036417,0.002177732,-0.475915669,0.63446967,neg,ns,0.197589134,-0.0001038,0.0000749,-1.385989138,0.166746379,neg,ns,0.049630408,Dyrk1b,Dyrk1b_fiveUTR,7,28179508,28179557,28179556,28179557,50,+,TCGCCATTTTGCTGGTTGCATTACTGGGTAATCGGGGCCCTGGCTTGCCG,Promoter (<=1kb),7,28179469,28187294,7826,1,Dyrk1b-201,39,Dyrk1b-201;Dyrk1b-203;Dyrk1b-202;Fbl-201;Fbl-206;Fbl-203;Fbl-202;Fbl-205,Dyrk1b;Dyrk1b;Dyrk1b;Fbl;Fbl;Fbl;Fbl;Fbl,0;0;0;9798;9741;9738;4636;4514,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,8,13549,ENSMUSG00000002409,conserved gene and region,7,28179302,28179897,596,*,596,47,0.66442953,0.726094507,0.07885906,6.45E-31,CpGisland,TRUE,U1,Pr-A
5000,cg11205660,-0.000196047,0.0000153,-12.83376046,1.58E-30,loss,yes,-0.00000269,0.000026,-0.103503961,0.917629933,neg,ns,0.045180778,0.007602958,5.942526317,7.54E-09,pos,ns,8.122481982,-0.001433939,0.000261465,-5.484247449,8.63E-08,neg,yes,0.515772873,Dlg1,Dlg1_Exon,16,31754966,31755015,31754966,31754967,50,-,CGAAGACACAGCTTTATTGACTGCATCTCGGTAGCCACCAGCTCCACCCA,"Exon (Dlg1-204/Dlg1, exon 1 of 23)",16,31663443,31875129,211687,1,Dlg1-206,91523,Dlg1-206;Dlg1-205;Dlg1-203;Dlg1-209;Dlg1-202;Dlg1-201;Dlg1-215;Dlg1-204,Dlg1;Dlg1;Dlg1;Dlg1;Dlg1;Dlg1;Dlg1;Dlg1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,8,13383,ENSMUSG00000022770,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22222,cg16722379,-0.0000135,0.00000366,-3.682283104,0.000272618,loss,ns,-0.000000643,0.00000622,-0.103431519,0.917687377,neg,ns,-0.000436728,0.001821216,-0.23980042,0.810643463,neg,ns,0.091170115,-0.0000415,0.0000626,-0.662001948,0.508461777,neg,ns,0.917533518,Gm11679,Gm11679_Intergenic_downstream,11,111961933,111961982,111961933,111961934,50,+,CGTTAAGCAGTGGGTTCCATTTTAGGTGTTGACAGTGTATAATAAATCCA,Distal Intergenic,11,112042800,112043578,779,2,Gm11679-201,81596,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,7,100504331,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17465,cg15756032,-0.0000397,0.00000702,-5.661912388,3.41E-08,loss,yes,0.00000123,0.0000119,0.103398548,0.917713522,pos,ns,-0.005680518,0.003492128,-1.62666374,0.104824552,neg,ns,0.979536986,-0.000071,0.000120094,-0.591463677,0.554640832,neg,ns,0.867503461,Uroc1,Uroc1_Exon,6,90355271,90355320,90355319,90355320,50,-,CAGGTGGTGGGCTCCCAGGCAAGGATCCTGTACTCAGACCAGAAGGGCCG,"Exon (Uroc1-201/Uroc1, exon 16 of 20)",6,90333284,90364551,31268,1,Uroc1-201,21987,Uroc1-201;Uroc1-202,Uroc1;Uroc1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,243537,ENSMUSG00000034456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7361,cg00987824,0.0000333,0.00000784,4.251204982,0.0000282,gain,ns,0.00000138,0.0000133,0.103379927,0.917728289,pos,ns,0.000984746,0.003902189,0.252357449,0.800932025,pos,ns,0.096404341,0.0000631,0.000134196,0.470526644,0.638309684,pos,ns,0.055047695,Pou4f3,Pou4f3_fiveUTR,18,42395040,42395089,42395088,42395089,50,+,TGCTTGAAAATGTGTTTTAATCCTGTGTTGACAGTATTCCCTACTGACCG,Promoter (<=1kb),18,42395075,42397249,2175,1,Pou4f3-202,0,Pou4f3-201;Pou4f3-202,Pou4f3;Pou4f3,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,7,17,18998,ENSMUSG00000024497,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
16877,cg13868955,-0.0000016,0.00000351,-0.457260171,0.647804332,loss,ns,0.000000616,0.00000596,0.103314553,0.917780129,pos,ns,-0.003708878,0.001745656,-2.124632933,0.03440827,neg,ns,1.463337165,0.000187048,0.00006,3.115753434,0.002006425,pos,ns,0.925116334,Diaph3,Diaph3_Exon,14,86866572,86866621,86866620,86866621,50,+,ACCTGCTCTTCAAACTGAAGCTTAAAGAGAATAGCACTGAGCCGTGGCCG,"Exon (Diaph3-201/Diaph3, exon 21 of 28)",14,86655367,87141224,485858,2,Diaph3-201,274603,Diaph3-201;Diaph3-202;Diaph3-208;Diaph3-205,Diaph3;Diaph3;Diaph3;Diaph3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,11,56419,ENSMUSG00000022021,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3276,cg07931161,0.0000112,0.00000352,3.189939698,0.001568651,gain,ns,-0.000000617,0.00000597,-0.103296844,0.917794172,neg,ns,-0.002031179,0.001750087,-1.160615856,0.246691143,neg,ns,0.607846443,0.000073,0.0000602,1.212422394,0.226273914,pos,ns,0.912158578,Cadps2,Cadps2_Intron,6,23451540,23451589,23451588,23451589,50,-,TCGGTTAACATGTGGCAGAAGTAATCATCCACTTGTGAAAATGATTTTCG,"Intron (Cadps2-213/Cadps2, intron 9 of 29)",6,23262773,23839137,576365,2,Cadps2-213,387548,Cadps2-213;Cadps2-205;Cadps2-212;Cadps2-201;Cadps2-209;Cadps2-206;Cadps2-207;Cadps2-202;Cadps2-204,Cadps2;Cadps2;Cadps2;Cadps2;Cadps2;Cadps2;Cadps2;Cadps2;Cadps2,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,15,320405,ENSMUSG00000017978,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19380,cg11036290,0.0000039,0.00000409,0.955215884,0.340212812,gain,ns,-0.000000717,0.00000694,-0.103267259,0.917817633,neg,ns,-0.000211328,0.002034331,-0.103880743,0.917331162,neg,ns,0.037473853,-0.0000619,0.00007,-0.884083175,0.377336456,neg,ns,0.929867957,Efnb1,Efnb1_Exon,X,99147405,99147454,99147405,99147406,50,+,CGGACTACAGAGAACAACTACTGCCCCCACTATGAGAAGGTGAGTGGGGA,"Exon (Efnb1-201/Efnb1, exon 5 of 5)",20,99136130,99148991,12862,1,Efnb1-201,11275,Efnb1-201;Efnb1-202,Efnb1;Efnb1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,14,13641,ENSMUSG00000031217,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
866,cg03827266,-0.0000188,0.00000527,-3.556103058,0.000435159,loss,ns,0.000000925,0.00000896,0.103263153,0.917820889,pos,ns,-0.001086497,0.00262506,-0.413894216,0.679237785,neg,ns,0.167978163,-0.0000853,0.0000903,-0.944374783,0.345713608,neg,ns,0.911515831,Gm48750,Gm48750_Intergenic_upstream,10,9229310,9229359,9229358,9229359,50,-,ATAACAACTCACTTTTGAACCAGACATGGTGATAGAAAGCCTTGGCTTCG,Distal Intergenic,10,9356155,9356532,378,1,Gm48750-201,-126845,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,3,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20283,cg23115029,0.0000826,0.0000104,7.922343234,4.22E-14,gain,yes,0.00000183,0.0000177,0.103213849,0.917859986,pos,ns,0.015040854,0.005190184,2.897942486,0.004023884,pos,ns,2.395354555,-0.00047962,0.00017849,-2.687097958,0.007596521,neg,ns,0.189310092,Hoxc5,Hoxc5_Exon,15,102983942,102983991,102983942,102983943,50,+,CGCTGCCCCTACACCAAGTACCAGACGCTGGAACTGGAGAAGGAGTTTCT,"Exon (Hoxc9-201/Hoxc9, exon 3 of 3)",15,102967443,103015676,48234,1,Hoxc5-202,16499,Hoxc5-202;Hoxc9-202;Hoxc9-201,Hoxc5;Hoxc9;Hoxc9,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,72,134,15424,ENSMUSG00000022485,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
20227,cg20026415,0.00000236,0.000000956,2.465184247,0.014235914,gain,ns,-0.000000168,0.00000162,-0.103209471,0.917863458,neg,ns,-0.000691229,0.000476015,-1.452115782,0.147480746,neg,ns,0.831264675,0.0000258,0.0000164,1.577773919,0.115637414,pos,ns,0.025157037,Hoxc11,Hoxc11_Exon,15,102956470,102956519,102956470,102956471,50,+,CGCCCCCCGCACCCGCAAGAAGCGCTGCCCTTATTCGAAATTCCAGATCC,"Exon (Hoxc11-201/Hoxc11, exon 2 of 2)",15,102954427,102957708,3282,1,Hoxc11-201,2043,Hoxc11-201,Hoxc11,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,24,109663,ENSMUSG00000001656,conserved gene and region,15,102956280,102956607,328,*,328,23,0.625,0.718476191,0.070121951,2.74E-14,CpGisland,TRUE,U13,Hc-P
6465,cg05682600,0.0000118,0.00000199,5.943593802,7.50E-09,gain,yes,0.000000349,0.00000338,0.103130676,0.917925942,pos,ns,0.002122933,0.000990882,2.142469145,0.032934359,pos,ns,1.482350787,0.0000322,0.0000341,0.945061425,0.345363524,pos,ns,0.951649807,Rc3h2,Rc3h2_threeUTR,2,37370520,37370569,37370568,37370569,50,-,TTTTACATGATGGGTGTACACCATCTTTAATTTCATTTACATTTCAATCG,3' UTR,2,37370069,37422903,52835,2,Rc3h2-202,52334,Rc3h2-202;Rc3h2-201;Rc3h2-203;Rc3h2-205,Rc3h2;Rc3h2;Rc3h2;Rc3h2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,7,10,319817,ENSMUSG00000075376,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19744,cg25019495,0.00000633,0.00000366,1.729141324,0.084779328,gain,ns,-0.000000641,0.00000622,-0.102964387,0.91805781,neg,ns,0.002386192,0.001823243,1.308761973,0.191584378,pos,ns,0.717639906,-0.0000999,0.0000627,-1.59325504,0.112122057,neg,ns,0.922333307,Gpat3,Gpat3_Intergenic_downstream,5,101013790,101013839,101013790,101013791,50,+,CGAACACCTAAACATACAAATTATTAAAAGGAGGGGGAGCAGCCATTGGC,Distal Intergenic,5,100846417,100846850,434,1,Gpat3-205,167373,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,15,15,231510,ENSMUSG00000029314,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6784,cg20355078,0.00000924,0.00000285,3.237566546,0.001336112,gain,ns,0.000000499,0.00000485,0.10281858,0.918173438,pos,ns,0.010660216,0.001420558,7.504246926,6.59E-13,pos,yes,12.18100596,-0.000215526,0.0000489,-4.411734155,0.0000142,neg,ns,0.943206868,Azin1,Azin1_fiveUTR,15,38501512,38501561,38501512,38501513,50,-,CGTATTCCACAAAGCCGAAAGTCATAAACCAGGAAAGACAAGAGACGGGC,5' UTR,15,38487427,38519266,31840,2,Azin1-201,17705,Azin1-201;Azin1-203;Azin1-205;Azin1-206;Azin1-202;Azin1-207;Azin1-204,Azin1;Azin1;Azin1;Azin1;Azin1;Azin1;Azin1,0;0;0;-4124;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,9,54375,ENSMUSG00000037458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5370,cg21126885,0.0000162,0.00000556,2.909155852,0.003886073,gain,ns,0.00000097,0.00000945,0.102629528,0.918323362,pos,ns,0.001994804,0.002769476,0.720282289,0.47189395,pos,ns,0.326155591,0.000209419,0.0000952,2.198805035,0.028630275,pos,ns,0.133012361,Lmx1b,Lmx1b_Exon,2,33639475,33639524,33639475,33639476,50,-,CGAGAAGCGCTTACTGTTGGTAGTCTTGTTTGCAGTACAGTTTCCGATCC,"Exon (Lmx1b-201/Lmx1b, exon 2 of 8)",2,33560965,33640608,79644,2,Lmx1b-201,1084,Lmx1b-201;Lmx1b-203;Lmx1b-204,Lmx1b;Lmx1b;Lmx1b,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,26,16917,ENSMUSG00000038765,conserved gene but different region,2,33639200,33640032,833,*,833,76,0.673469388,0.805752832,0.091236495,1.56E-54,CpGisland,TRUE,U3,Pr-B
21354,cg19912994,0.0000249,0.00000352,7.088927528,9.17E-12,gain,yes,0.000000612,0.00000598,0.10246675,0.918452453,pos,ns,0.001265947,0.001751147,0.722924727,0.470271192,pos,ns,0.327651625,-0.0000131,0.0000602,-0.216946412,0.828392814,neg,ns,0.017019567,Kcnc4,Kcnc4_Exon,3,107458756,107458805,107458756,107458757,50,+,CGTGCCGCCCACGTTGATGATGATCTTCTCCGACGCCTCGCCCTTGGCCA,Promoter (<=1kb),3,107438303,107459552,21250,2,Kcnc4-201,747,Kcnc4-201;Kcnc4-202,Kcnc4;Kcnc4,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,12,99738,ENSMUSG00000027895,conserved gene and region,3,107458518,107458984,467,*,467,47,0.665952891,0.908861284,0.100642398,4.28E-36,CpGisland,TRUE,NA,NRS
12548,cg14329189,0.0000139,0.00000249,5.596699523,4.81E-08,gain,yes,0.000000433,0.00000423,0.102457644,0.918459674,pos,ns,0.003110638,0.001238085,2.512458154,0.012496829,pos,ns,1.903200181,-0.0000515,0.0000426,-1.21042489,0.227037979,neg,ns,0.042868981,Pappa,Pappa_Promoter,4,65123939,65123988,65123939,65123940,50,-,CGGCCTCTCCAAACTGATTGATTAGTCATGATCCCCGCAGTTTTAACAGG,Promoter (<=1kb),4,65124174,65357509,233336,1,Pappa-201,-235,Pappa-201,Pappa,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,5,18491,ENSMUSG00000028370,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
18205,cg05032451,0.0000613,0.00000891,6.883352787,3.25E-11,gain,yes,-0.00000155,0.0000151,-0.102420088,0.918489458,neg,ns,0.009178871,0.004435512,2.069404955,0.039336394,pos,ns,1.405205453,0.0000611,0.000152537,0.400801805,0.688842148,pos,ns,0.168305267,Celf3,Celf3_fiveUTR,3,94478519,94478568,94478519,94478520,50,+,CGCCATCAGAGATCAAGCATCTGGCATCAGGGATCTTCGGACCCAGCAGA,Promoter (<=1kb),3,94478295,94485318,7024,1,Celf3-214,224,Celf3-214;Celf3-208;Celf3-204;Celf3-215;Celf3-201;Celf3-213;Celf3-212;Celf3-207;Celf3-206;Riiad1-201;Riiad1-202,Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Riiad1;Riiad1,0;0;0;0;0;0;0;0;0;-4928;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,12,78784,ENSMUSG00000028137,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9101,cg05166408,-0.00000489,0.00000188,-2.608910705,0.009523404,loss,ns,0.000000326,0.00000319,0.102419361,0.918490035,pos,ns,-0.000363334,0.000933627,-0.389163797,0.697422166,neg,ns,0.156504254,-0.0000297,0.0000321,-0.924840747,0.355768106,neg,ns,0.049555604,Samd4,Samd4_fiveUTR,14,46882889,46882938,46882889,46882890,50,-,CGCTCGGGCGCTCCCTGCCAAGCCCATGATGTAATGGTGTATGTTAATCA,Promoter (<=1kb),14,46882854,47103150,220297,1,Samd4-201,35,Samd4-201;Samd4-211;Samd4-202;Samd4-208;Samd4-206,Samd4;Samd4;Samd4;Samd4;Samd4,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,16,74480,ENSMUSG00000021838,conserved gene but different region,14,46882545,46882898,354,*,354,34,0.700564972,0.854829546,0.096045198,1.59E-25,CpGisland,TRUE,U3,Pr-B
15905,cg05611300,0.0000473,0.00000567,8.337055015,2.52E-15,gain,yes,0.000000986,0.00000963,0.102407015,0.918499826,pos,ns,0.01270513,0.002822025,4.502132379,0.00000953,pos,ns,5.020730784,-0.000240001,0.000097,-2.472982653,0.013935022,neg,ns,0.092925882,Hnf1b,Hnf1b_fiveUTR,11,83850846,83850895,83850894,83850895,50,+,GGCCTAATGGTGGCGATCATGGCAAGTTAGAAGTTTTCTGACTCCTTTCG,Promoter (<=1kb),11,83850855,83905819,54965,1,Hnf1b-201,0,Hnf1b-204;Hnf1b-201;Hnf1b-203;Hnf1b-205;Hnf1b-202,Hnf1b;Hnf1b;Hnf1b;Hnf1b;Hnf1b,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,4,21410,ENSMUSG00000020679,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
1629,cg16870887,-0.0000266,0.0000124,-2.15584821,0.031864722,loss,ns,0.00000215,0.000021,0.102387035,0.918515671,pos,ns,-0.008174925,0.006150576,-1.329131502,0.184781959,neg,ns,0.733340434,0.000092,0.000211518,0.434835231,0.663984576,pos,ns,0.589129552,Zfp521,Zfp521_Intron,18,13898980,13899029,13899028,13899029,50,-,GAGTGTACTTATTACAGGACTGTCAGAGGAGTTTTTGTTTCAACAACACG,"Intron (Zfp521-201/Zfp521, intron 3 of 7)",18,13687013,13972787,285775,2,Zfp521-201,73758,Zfp521-201;Zfp521-204;Zfp521-203;Zfp521-202,Zfp521;Zfp521;Zfp521;Zfp521,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,81,225207,ENSMUSG00000024420,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13823,cg06695854,0.0000351,0.00000363,9.664960846,1.73E-19,gain,yes,-0.000000631,0.00000617,-0.102287951,0.918594251,neg,ns,0.005690338,0.001808326,3.14674369,0.001811393,pos,ns,2.741987428,-0.0000552,0.0000622,-0.888168953,0.375138481,neg,ns,0.091284675,Six1,Six1_Exon,12,73045904,73045953,73045952,73045953,50,+,GGTTCTTAAACCAGTTGCTGACCTGGGTGGTGGTGAGGCCGGTGGCCTCG,"Exon (Six1-201/Six1, exon 1 of 2)",12,73041827,73047179,5353,2,Six1-201,1226,Six1-204;Six1-201;Six1-203;Six1-202,Six1;Six1;Six1;Six1,0;0;0;-613,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,18,20471,ENSMUSG00000051367,conserved gene and region,12,73045722,73046158,437,*,437,46,0.679633867,0.912400145,0.105263158,2.63E-36,CpGisland,TRUE,U3,Pr-B
12701,cg27323708,0.0000138,0.00000837,1.652629405,0.099418701,gain,ns,0.00000145,0.0000142,0.102171057,0.918686956,pos,ns,-0.001685838,0.004167366,-0.404533187,0.686099649,neg,ns,0.163612803,0.0000845,0.000143315,0.589393311,0.556026746,pos,ns,0.454471146,Gm6555,Gm6555_Intergenic_upstream,3,66797957,66798006,66797957,66797958,50,-,CGAGTGAGAAAATGAAGATAGATCCTCTGACACTGTCAGATTAGGGGCAG,Distal Intergenic,3,66882350,66883138,789,1,Gm6555-201,-84393,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,10,625115,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26166,cg19458915,-0.0000373,0.00000737,-5.061065443,0.000000716,loss,yes,-0.00000128,0.0000125,-0.10210222,0.91874155,neg,ns,-0.001518257,0.003666795,-0.414055515,0.679119781,neg,ns,0.168053619,0.000155241,0.000126101,1.231090557,0.219222178,pos,ns,0.111046729,Lmo4,Lmo4_Intron,3,144203990,144204039,144204038,144204039,50,-,ATGAATCAAGAAGACTGACCAGAAACTGACTCCCCTGATAACTAAGGACG,"Intron (Lmo4-201/Lmo4, intron 1 of 4)",3,144188530,144205220,16691,2,Lmo4-201,1181,Lmo4-203;Lmo4-201;Lmo4-202;Lmo4-207;Lmo4-208;Lmo4-205;Lmo4-204,Lmo4;Lmo4;Lmo4;Lmo4;Lmo4;Lmo4;Lmo4,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,54,16911,ENSMUSG00000028266,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9963,cg06900751,-0.00000631,0.00000423,-1.489737166,0.137310043,loss,ns,-0.000000734,0.00000719,-0.102039209,0.918791523,neg,ns,-0.006820811,0.002106963,-3.237271469,0.001337449,neg,ns,2.873722739,0.000304697,0.0000725,4.205138928,0.0000342,pos,ns,0.912587325,Satb1,Satb1_Intron,17,51760663,51760712,51760663,51760664,50,-,CGGAGAAACTCCCAAGGGGGAGACCTAATGGAATATTTTCCCTCAGTCTA,"Intron (Satb1-208/Satb1, intron 9 of 10)",17,51736187,51832672,96486,2,Satb1-208,71960,Satb1-208;Satb1-213;Satb1-204;Satb1-214;Satb1-203;Satb1-211;Satb1-207,Satb1;Satb1;Satb1;Satb1;Satb1;Satb1;Satb1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,28,36,20230,ENSMUSG00000023927,conserved gene and region,17,51760544,51760676,133,*,133,9,0.541353384,0.93515625,0.067669173,0.00000959,CpGisland,TRUE,U15,NS
3924,cg00879119,-0.0000077,0.00000275,-2.803896085,0.005367358,loss,ns,0.000000476,0.00000467,0.101940647,0.918869692,pos,ns,0.000384395,0.001367353,0.281123293,0.778803379,pos,ns,0.108572173,-0.0000635,0.000047,-1.351367197,0.177563174,neg,ns,0.936182861,Gm7847,Gm7847_Intergenic_downstream,18,25791996,25792045,25791996,25791997,50,+,CGAGAAAATGCATGCCAAATTTTATTGCTTCTAAATCTGAATAATTGTAT,Distal Intergenic,18,25823581,25824357,777,2,Gm7847-201,32312,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,22,665916,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12360,cg15224658,-0.000000308,0.000002,-0.154068939,0.87765563,loss,ns,0.000000346,0.0000034,0.101888106,0.918911362,pos,ns,0.000281108,0.000995851,0.28227875,0.777918144,pos,ns,0.109066099,-0.0000185,0.0000342,-0.539105098,0.590201292,neg,ns,0.056819423,Smad6,Smad6_fiveUTR,9,64022023,64022072,64022071,64022072,50,+,GCGGAGTCATTGGCTGCCTCCCATCATATGCCAGTCTAGACACTTTGGCG,Promoter (<=1kb),9,63953076,64022059,68984,2,Smad6-201,0,Smad6-201;Smad6-203,Smad6;Smad6,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,9,19,17130,ENSMUSG00000036867,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3268,cg20496813,-0.0000154,0.00000763,-2.015911465,0.044671659,loss,ns,-0.00000132,0.000013,-0.101829668,0.91895771,neg,ns,0.000401258,0.003795266,0.105725936,0.915868181,pos,ns,0.038167029,-0.000176965,0.000130519,-1.355855742,0.176131922,neg,ns,0.052450218,Kmt2e,Kmt2e_Exon,5,23433088,23433137,23433088,23433089,50,-,CGCCCCAAAGAGACCCAGCGCCATCTTGCCCTGACGCAGTTACAAAAGTC,Promoter (1-2kb),5,23434441,23504235,69795,1,Kmt2e-201,-1353,Kmt2e-207;Kmt2e-201;Kmt2e-202,Kmt2e;Kmt2e;Kmt2e,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,8,69188,ENSMUSG00000029004,conserved gene but different region,5,23432945,23433306,362,*,362,34,0.67679558,0.848827586,0.093922652,3.52E-25,CpGisland,TRUE,U1,Pr-A
9107,cg19104850,0.0000077,0.00000238,3.23242736,0.001359571,gain,ns,-0.000000412,0.00000405,-0.101824048,0.918962167,neg,ns,0.004078203,0.001185247,3.440803974,0.000659522,pos,ns,3.18077069,-0.0000983,0.0000408,-2.412290984,0.016433112,neg,ns,0.058616143,Samd4,Samd4_Exon,14,46884855,46884904,46884903,46884904,50,-,GCTGGTTTAAGGGCTGGAACGAGTGCGAGCAGACTGTTGCGCTGCTGTCG,"Exon (Samd4-201/Samd4, exon 2 of 13)",14,46882854,47103150,220297,1,Samd4-201,2001,Samd4-201;Samd4-211;Samd4-202;Samd4-208;Samd4-206,Samd4;Samd4;Samd4;Samd4;Samd4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,Exon,11,16,74480,ENSMUSG00000021838,conserved gene but different region,14,46884695,46885193,499,*,499,47,0.703406814,0.76473849,0.094188377,1.18E-34,CpGisland,TRUE,U3,Pr-B
20375,cg00576279,0.0000479,0.0000052,9.223004527,4.59E-18,gain,yes,-0.000000896,0.00000883,-0.101549112,0.919180223,neg,ns,0.005854757,0.002586359,2.263706203,0.024283164,pos,ns,1.61469473,-0.000174735,0.0000889,-1.964539446,0.050360555,neg,ns,0.128260407,Hoxc5,Hoxc5_Exon,15,103014468,103014517,103014468,103014469,50,-,CGGACTGAGCCAGCCACCGGCCCCGCCACAGATTTACCCGTGGATGACCA,"Exon (Hoxc5-201/Hoxc5, exon 1 of 2)",15,102967443,103015676,48234,1,Hoxc5-202,47025,Hoxc4-202;Hoxc5-202;Hoxc5-201;Hoxc6-202;Hoxc6-203;Hoxc6-201,Hoxc4;Hoxc5;Hoxc5;Hoxc6;Hoxc6;Hoxc6,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,72,134,15424,ENSMUSG00000022485,mapped to different genes,15,103014167,103014734,568,*,568,41,0.588028169,0.835773758,0.072183099,1.73E-25,CpGisland,TRUE,U13,Hc-P
4321,cg24491182,0.000000132,0.0000024,0.054844619,0.956297582,gain,ns,0.000000414,0.00000408,0.101418862,0.919283528,pos,ns,0.001479576,0.0011953,1.23782828,0.21671641,pos,ns,0.664108202,-0.0000398,0.0000411,-0.969284214,0.333159029,neg,ns,0.935973497,Glis3,Glis3_Intron,19,28395442,28395491,28395442,28395443,50,+,CGGCTTAAAGCAGCCACATCAATAATGGCAGAATGACGGCTTAGTTCAAA,"Intron (Glis3-209/Glis3, intron 4 of 10)",19,28258851,28680077,421227,2,Glis3-209,284586,Glis3-209;Glis3-201;Glis3-207;Glis3-202,Glis3;Glis3;Glis3;Glis3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,8,226075,ENSMUSG00000052942,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26997,cg17937820,0.00000952,0.00000488,1.949571243,0.052128676,gain,ns,-0.000000841,0.0000083,-0.101296357,0.919380693,neg,ns,-0.002461895,0.002431057,-1.012685184,0.312000302,neg,ns,0.505844986,0.0000279,0.0000836,0.334112563,0.738520533,pos,ns,0.879014076,Gdf5,Gdf5_Promoter,2,155949494,155949543,155949542,155949543,50,+,GGTGACTAATCACTTTGGTTCCCTCTGGTAATTGCAACCAGATGCTGCCG,Promoter (4-5kb),2,155941023,155945367,4345,2,Gdf5-201,-4127,Gdf5-201,Gdf5,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,6,14563,ENSMUSG00000038259,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23139,cg08909763,0.0000909,0.0000114,7.999714517,2.51E-14,gain,yes,-0.00000195,0.0000193,-0.101183923,0.91946987,neg,ns,0.007448897,0.005652717,1.317755016,0.188558662,pos,ns,0.724553512,-0.000099,0.000194396,-0.509259383,0.610932723,neg,ns,0.564956326,Rnf220,Rnf220_Intron,4,117322257,117322306,117322257,117322258,50,+,CGTCTTCACTCCCAGGAGCCCAGCTTCCGTCCTGAGCCCCTAAATCAGGA,"Intron (Rnf220-201/Rnf220, intron 2 of 14)",4,117271463,117497052,225590,2,Rnf220-201,174746,Rnf220-201;Rnf220-202;Rnf220-207,Rnf220;Rnf220;Rnf220,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27171,cg06591696,-0.0000772,0.0000137,-5.658214398,3.48E-08,loss,yes,-0.00000234,0.0000232,-0.101008378,0.919609106,neg,ns,-0.018702238,0.006794153,-2.752695988,0.006259041,neg,ns,2.203492225,0.000454112,0.00023365,1.943551492,0.052854326,pos,ns,0.684252621,Gm14220,Gm14220_Intergenic_downstream,2,160066473,160066522,160066521,160066522,50,-,TGTGTTCAGTGAAGCTGAAAATGCTATTTTGATAATGGGCCCACAGAACG,Distal Intergenic,2,159978274,159978722,449,1,Gm14220-201,88248,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,3,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6069,cg16022461,0.000151356,0.0000155,9.794783799,6.53E-20,gain,yes,-0.00000265,0.0000263,-0.100982454,0.919629669,neg,ns,0.021311234,0.007690984,2.77093739,0.005927041,pos,ns,2.227162083,-0.000332518,0.000264492,-1.25719325,0.209630006,neg,ns,0.410346743,Psd2,Psd2_Intergenic_upstream,18,35933645,35933694,35933693,35933694,50,+,GTGGCTGGAGGTGACCTTCTGGAGACGGCGATTAATCACGGGCCGTGGCG,Distal Intergenic,18,35964830,36014712,49883,1,Psd2-201,-31136,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,24,29,74002,ENSMUSG00000024347,mapped to different genes,18,35933670,35933711,42,*,42,10,0.761904762,1.647058824,0.238095238,3.06E-12,CpGisland,TRUE,U13,Hc-P
20527,cg18745931,0.0000433,0.0000136,3.177199645,0.001636917,gain,ns,0.00000234,0.0000232,0.100982357,0.919629745,pos,ns,0.031380178,0.006786711,4.623768072,0.00000554,pos,ns,5.256540844,-0.000626043,0.000233394,-2.682337398,0.007702946,neg,ns,0.216774708,Ehf,Ehf_Intron,2,103293451,103293500,103293451,103293452,50,-,CGTAAACAGAGCTGTTAATTCAGTTGCTGGCAGGGGCTTCTGTTATCTTC,"Intron (Ehf-201/Ehf, intron 1 of 8)",2,103263433,103303278,39846,2,Ehf-201,9778,Ehf-201;Ehf-203;Ehf-204;Ehf-207;Ehf-208;Ehf-205,Ehf;Ehf;Ehf;Ehf;Ehf;Ehf,0;0;0;-2514;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,13661,ENSMUSG00000012350,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10849,cg05779610,0.0000163,0.00000554,2.944377072,0.003480753,gain,ns,0.000000949,0.00000941,0.10087625,0.919713907,pos,ns,-0.000737456,0.002757478,-0.267438683,0.789309259,neg,ns,0.102752803,-0.000151023,0.0000948,-1.592578477,0.112273896,neg,ns,0.925071587,Vti1a,Vti1a_threeUTR,19,55627184,55627233,55627232,55627233,50,+,TGACAAGGAAATAATTGCGCATTGCCAGCAACTTGGCGCCTGTTTAGACG,3' UTR,19,55316350,55627309,310960,1,Vti1a-202,310834,Vti1a-202;Vti1a-201,Vti1a;Vti1a,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,8,32,53611,ENSMUSG00000024983,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
200,cg16168543,-0.00000184,0.00000233,-0.792745017,0.428532668,loss,ns,-0.000000398,0.00000395,-0.100782308,0.919788421,neg,ns,-0.000748066,0.001158211,-0.645880762,0.518834387,neg,ns,0.284971248,-0.0000119,0.0000398,-0.298593096,0.765450584,neg,ns,0.938708586,Cabp7,Cabp7_Exon,11,4738841,4738890,4738889,4738890,50,-,GCACCTGGTTGGCCGCAATGAGCATGACACTGATGATGAAGGCGATGGCG,"Exon (Cabp7-201/Cabp7, exon 5 of 5)",11,4736892,4746778,9887,2,Cabp7-201,7888,Cabp7-201;Zmat5-201;Zmat5-203,Cabp7;Zmat5;Zmat5,0;34163;34133,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,192650,ENSMUSG00000009075,conserved gene and region,11,4738813,4738957,145,*,145,13,0.627586207,0.919512195,0.089655172,1.29E-09,CpGisland,TRUE,U11,Tr-P
9305,cg14945523,-0.00000128,0.0000015,-0.84984885,0.396064987,loss,ns,0.000000257,0.00000255,0.10074887,0.919814944,pos,ns,-0.000751911,0.000747724,-1.005599455,0.31539256,neg,ns,0.501148556,0.000011,0.0000257,0.429614021,0.667774888,pos,ns,0.030280009,Nr4a3,Nr4a3_Promoter,4,48046003,48046052,48046051,48046052,50,+,TAATTCAGGGTATTTCGGCTCTAGTTGTCATGGTAATGATGCTCTCGGCG,Promoter (<=1kb),4,48045153,48086445,41293,1,Nr4a3-201,850,Nr4a3-201;Nr4a3-204;Nr4a3-203,Nr4a3;Nr4a3;Nr4a3,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,6,20,18124,ENSMUSG00000028341,mapped to different genes,4,48045998,48046112,115,*,115,14,0.634782609,1.277777778,0.12173913,3.03E-12,CpGisland,TRUE,U3,Pr-B
12211,cg01427985,0.00000887,0.00000557,1.59177609,0.112454185,gain,ns,0.000000953,0.00000946,0.100672473,0.919875541,pos,ns,0.000885997,0.002771993,0.319624721,0.749468125,pos,ns,0.125246833,-0.000111431,0.0000953,-1.168912491,0.243336947,neg,ns,0.889057991,Iqch,Iqch_Exon,9,63482611,63482660,63482611,63482612,50,-,CGTTTCTCATTGACTGGCTGTGCGTGCTGTGCTAAAATGCCCGCCAGCTC,"Exon (Iqch-201/Iqch, exon 16 of 22)",9,63421455,63602493,181039,2,Iqch-201,119833,Iqch-201;Iqch-203;Iqch-204;Iqch-202;Iqch-206,Iqch;Iqch;Iqch;Iqch;Iqch,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,22,78250,ENSMUSG00000037801,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7261,cg06131655,-0.00000193,0.000000819,-2.357915371,0.018998766,loss,ns,-0.00000014,0.00000139,-0.100537343,0.919982727,neg,ns,0.000281668,0.000407609,0.691025182,0.490066834,pos,ns,0.309744688,-0.0000194,0.000014,-1.380649283,0.16838144,neg,ns,0.978260146,Thoc2,Thoc2_Exon,X,41814321,41814370,41814369,41814370,50,+,TGGATGGCTCCTTCTCTCTTTCCCTTTCTTGAGTTGATTTTGATTCTGCG,Promoter (<=1kb),20,41812004,41814322,2319,2,Thoc2-206,0,Thoc2-203;Thoc2-201;Thoc2-212;Thoc2-208;Thoc2-206;Thoc2-202;Thoc2-211,Thoc2;Thoc2;Thoc2;Thoc2;Thoc2;Thoc2;Thoc2,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,7,331401,ENSMUSG00000037475,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19358,cg26393176,0.0000579,0.00000887,6.523164918,2.80E-10,gain,yes,-0.00000151,0.0000151,-0.100427956,0.920069494,neg,ns,0.00778471,0.004415682,1.762969029,0.078890961,pos,ns,1.102972751,-0.000123542,0.000151855,-0.813552374,0.416525853,neg,ns,0.07476626,Dnajc22,Dnajc22_Intron,15,99096652,99096701,99096700,99096701,50,+,CTGGAAAAGGCAAATTTGACATTTTTAAATCCCGAGCCTTAGAGGGATCG,"Intron (Dnajc22-202/Dnajc22, intron 1 of 2)",15,99093170,99100917,7748,1,Dnajc22-202,3482,Dnajc22-202;Dnajc22-201,Dnajc22;Dnajc22,0;-2711,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,8,72778,ENSMUSG00000038009,conserved gene but different region,15,99096546,99097272,727,*,727,67,0.676753783,0.806226827,0.09215956,1.82E-48,CpGisland,TRUE,U3,Pr-B
25490,cg16197368,-0.0000614,0.0000205,-2.989617365,0.003016893,loss,ns,-0.0000035,0.0000349,-0.100419927,0.920075863,neg,ns,0.086524431,0.01021898,8.467032159,1.02E-15,pos,yes,14.99101172,-0.003097607,0.00035143,-8.814297324,8.81E-17,neg,yes,0.39173697,Nr5a2,Nr5a2_Intron,1,136912257,136912306,136912257,136912258,50,+,CGACAGAGTGTAAATGTAAAGCAGCGGGCCTGTGAAATAATTCAAAGGCA,"Intron (Nr5a2-201/Nr5a2, intron 6 of 8)",1,136842571,136960448,117878,2,Nr5a2-201,48142,Nr5a2-201;Nr5a2-202;Nr5a2-203;Nr5a2-205;Nr5a2-204,Nr5a2;Nr5a2;Nr5a2;Nr5a2;Nr5a2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,5,26424,ENSMUSG00000026398,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
18345,cg05317739,0.00000983,0.00000287,3.426105689,0.000694873,gain,ns,0.000000489,0.00000488,0.100329563,0.920147542,pos,ns,-0.000480769,0.001428468,-0.336562649,0.736674335,neg,ns,0.13272446,0.0000345,0.0000491,0.703015711,0.482573569,pos,ns,0.011514574,Otp,Otp_Promoter,13,94868979,94869028,94868979,94868980,50,+,CGTGACGTGCAACCGCTCCATCTCATTAAGGAAATCGCTCTTCAATGCTG,Promoter (6-7kb),13,94875602,94885130,9529,1,Otp-201,-6574,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,27,34,18420,ENSMUSG00000021685,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
15003,cg09086349,0.0000294,0.00000672,4.371614832,0.0000169,gain,ns,-0.00000114,0.0000114,-0.100323913,0.920152023,neg,ns,0.01059399,0.003342195,3.169770426,0.001677982,pos,ns,2.775212603,-0.000254095,0.000114938,-2.21071728,0.027785272,neg,ns,0.168357032,Pou4f2,Pou4f2_Exon,8,78435666,78435715,78435666,78435667,50,-,CGAATATATTGCTCTGCAATTGTAAGTAGAAGGCACACATTACGCTCAGC,Promoter (<=1kb),8,78433010,78436645,3636,2,Pou4f2-201,930,Pou4f2-201,Pou4f2,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,23,18997,ENSMUSG00000031688,conserved gene and region,8,78435471,78435667,197,*,197,16,0.659898477,0.807997949,0.081218274,4.47E-11,CpGisland,TRUE,U13,Hc-P
4062,cg10004186,0.0000056,0.00000614,0.912495217,0.362217162,gain,ns,-0.00000105,0.0000104,-0.100276383,0.920189725,neg,ns,-0.008864719,0.003055994,-2.900764138,0.003988792,neg,ns,2.399158559,0.000243759,0.000105095,2.319402419,0.021022821,pos,ns,0.817837706,Gm45647,Gm45647_Intergenic_upstream,8,26677732,26677781,26677780,26677781,50,-,AGCCAATTACTGCATCCAAATGGAACCACATTAATCAAATCTTTAGTACG,Distal Intergenic,8,26780315,26780509,195,1,Gm45647-201,-102583,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,46,62,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17538,cg00005271,-0.00000177,0.000000793,-2.227668362,0.026620127,loss,ns,-0.000000135,0.00000135,-0.100250165,0.920210523,neg,ns,0.00010703,0.000394802,0.271096873,0.786496952,pos,ns,0.104302956,-0.0000022,0.0000136,-0.161954582,0.871447127,neg,ns,0.974540848,Fnbp4,Fnbp4_Exon,2,90767843,90767892,90767843,90767844,50,-,CGCTTTACAGGACCTCTGGAAGCAACTACTCCTGATTAACCTCGGTGAAG,"Exon (Fnbp4-202/Fnbp4, exon 11 of 14)",2,90745370,90781021,35652,1,Fnbp4-201,22473,Fnbp4-201;Fnbp4-210;Fnbp4-202;Fnbp4-209;Fnbp4-208;Fnbp4-207;Fnbp4-206;Fnbp4-205,Fnbp4;Fnbp4;Fnbp4;Fnbp4;Fnbp4;Fnbp4;Fnbp4;Fnbp4,0;0;0;0;0;0;-213;-770,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,6,55935,ENSMUSG00000008200,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6772,cg26632234,-0.00000207,0.00000802,-0.258308953,0.796339888,loss,ns,0.00000136,0.0000136,0.099893284,0.920493617,pos,ns,0.004141783,0.003992291,1.037445116,0.300336998,pos,ns,0.522391165,-0.000100234,0.000137295,-0.730064154,0.465902295,neg,ns,0.550373267,Lhx2,Lhx2_Intergenic_downstream,2,38395351,38395400,38395399,38395400,50,+,TCAGGGCCGAGGTGGCATTTCCCTCAGTGATGCTGACAGCAGCTGTCCCG,Distal Intergenic,2,38353802,38360089,6288,1,Lhx2-206,41549,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,33,16870,ENSMUSG00000000247,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17921,cg27245728,0.00000249,0.00000264,0.946017612,0.344876391,gain,ns,-0.000000446,0.00000448,-0.099551526,0.920764725,neg,ns,0.000377908,0.001312623,0.287903145,0.77361326,pos,ns,0.111476095,-0.0000569,0.0000451,-1.261205089,0.20818324,neg,ns,0.954440847,Prickle2,Prickle2_Intron,6,92545101,92545150,92545149,92545150,50,+,AAGTAGGTCAAAGCCATTTTATACTTGCAATATGATTACCATAGTAATCG,"Intron (Prickle2-204/Prickle2, intron 1 of 7)",6,92370908,92567366,196459,2,Prickle2-204,22216,Prickle2-204;Prickle2-201,Prickle2;Prickle2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,243548,ENSMUSG00000030020,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6941,cg15867942,0.00000233,0.00000235,0.987722333,0.324058946,gain,ns,-0.000000398,0.000004,-0.099460198,0.920837175,neg,ns,0.00283232,0.001171948,2.416763504,0.016236369,pos,ns,1.789511074,-0.0000801,0.0000403,-1.987958335,0.047695647,neg,ns,0.04805217,Tmem178b,Tmem178b_fiveUTR,6,39871414,39871463,39871462,39871463,50,+,GAGATGAGGCTCACGTTGCACGGATGACATCACTAGCTTTTGGCTGCGCG,Promoter (<=1kb),6,39871461,40245772,374312,1,Tmem178b-204,0,Tmem178b-204;Tmem178b-203,Tmem178b;Tmem178b,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,7,434008,ENSMUSG00000057716,conserved gene but different region,6,39871427,39871987,561,*,561,47,0.663101604,0.766482558,0.083778966,3.58E-32,CpGisland,TRUE,U3,Pr-B
24938,cg08877390,0.0000273,0.00000549,4.977897713,0.00000107,gain,yes,-0.000000927,0.00000932,-0.099424047,0.920865853,neg,ns,0.013319351,0.002730101,4.878702913,0.00000171,pos,ns,5.766872156,-0.000407339,0.0000939,-4.338561439,0.0000194,neg,ns,0.114592144,Tgm3,Tgm3_Promoter,2,130012232,130012281,130012232,130012233,50,+,CGTTTACAGGCACTACAGGAATGACCTGGTGCCTCGCCCACTTCATTAGA,Promoter (<=1kb),2,130012349,130050399,38051,1,Tgm3-201,-68,Tgm3-201,Tgm3,-68,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,2,21818,ENSMUSG00000027401,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26975,cg13367380,0.0000575,0.000012,4.791258227,0.00000257,gain,ns,-0.00000203,0.0000204,-0.099288326,0.920973521,neg,ns,0.02124848,0.005975563,3.55589562,0.000435489,pos,ns,3.361022513,-0.00052086,0.000205499,-2.534610902,0.011748974,neg,ns,0.463516512,Trpc4ap,Trpc4ap_Exon,2,155639501,155639550,155639549,155639550,50,+,ATCTGGTCTGCATAGGAGGTGGTCCCTCGGAGGAAACTCTCCACAGCCCG,"Exon (Trpc4ap-201/Trpc4ap, exon 14 of 19)",2,155634271,155692384,58114,2,Trpc4ap-201,52834,Trpc4ap-201;Trpc4ap-202;Trpc4ap-210;Trpc4ap-206;Trpc4ap-209;Trpc4ap-207;Trpc4ap-205,Trpc4ap;Trpc4ap;Trpc4ap;Trpc4ap;Trpc4ap;Trpc4ap;Trpc4ap,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,56407,ENSMUSG00000038324,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11219,cg26334638,-0.0000141,0.00000313,-4.496524431,0.00000977,loss,ns,-0.000000528,0.00000532,-0.099240386,0.921011553,neg,ns,-0.004018277,0.001558217,-2.578766844,0.010376267,neg,ns,1.983958855,0.000072,0.0000536,1.343995625,0.179932585,pos,ns,0.955447715,Epb41l4b,Epb41l4b_Exon,4,57076916,57076965,57076964,57076965,50,-,AAAGAATAAGCCTATTTTGTTAGCTCCTTCAAAGATTAATATGCCTGTCG,"Exon (Epb41l4b-203/Epb41l4b, exon 9 of 26)",4,56991972,57143437,151466,2,Epb41l4b-203,66472,Epb41l4b-203;Epb41l4b-201;Epb41l4b-206;Epb41l4b-205,Epb41l4b;Epb41l4b;Epb41l4b;Epb41l4b,0;0;0;61227,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,54357,ENSMUSG00000028434,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23928,cg02680430,0.0000358,0.00000858,4.177041327,0.0000384,gain,ns,0.00000145,0.0000146,0.099237927,0.921013503,pos,ns,0.005604943,0.004270832,1.312377206,0.190363744,pos,ns,0.720415761,-0.000145775,0.000146874,-0.992520229,0.321717885,neg,ns,0.094533392,Insig2,Insig2_Intron,1,121177277,121177326,121177325,121177326,50,-,CCTGGAGCTCGAGAGAGATACCAGCCTGTCATGTCCCTGTTGCTGTGACG,"Intron (Celrr-203/Celrr-203, intron 2 of 2)",1,121305893,121307318,1426,2,Insig2-206,130041,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,17,72999,ENSMUSG00000003721,mapped to different genes,1,121177286,121177544,259,*,259,12,0.548262548,0.626612903,0.046332046,0.00000825,CpGisland,TRUE,U13,Hc-P
18595,cg25830578,0.0000538,0.00000825,6.527639017,2.73E-10,gain,yes,0.00000139,0.000014,0.099209326,0.921036193,pos,ns,0.006103539,0.004104132,1.487169205,0.137986523,pos,ns,0.86016333,0.000041,0.000141141,0.290802284,0.771396994,pos,ns,0.074253036,Hoxb5,Hoxb5_Exon,11,96303739,96303788,96303739,96303740,50,+,CGGCTCTTACGGCTACAATTACAATGGGATGGACCTCAGCGTCAACCGCT,Promoter (<=1kb),11,96303336,96306121,2786,1,Hoxb5-202,403,Hoxb5-202;Hoxb5-201;Hoxb6-202;Hoxb6-201,Hoxb5;Hoxb5;Hoxb6;Hoxb6,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,22,34,15413,ENSMUSG00000038700,conserved gene and region,11,96303706,96304121,416,*,416,40,0.675480769,0.879120879,0.096153846,5.87E-30,CpGisland,TRUE,U3,Pr-B
18507,cg25965355,0.0000361,0.00000976,3.695830981,0.000259066,gain,ns,-0.00000164,0.0000166,-0.099098678,0.921123972,neg,ns,-0.002199849,0.004857279,-0.452897459,0.65093939,neg,ns,0.186459447,0.000261395,0.000167041,1.564852459,0.118637716,pos,ns,0.134951594,Tenm4,Tenm4_Intron,7,96210023,96210072,96210023,96210024,50,-,CGAGCAGGCAGGGAGGGGAAGAAGAGAAGGGAAGCTATTAAACACACACA,"Intron (Tenm4-201/Tenm4, intron 1 of 32)",7,96171246,96908569,737324,1,Tenm4-201,38777,Tenm4-201;Tenm4-211;Tenm4-208;Tenm4-204;Tenm4-209;Tenm4-203;Tenm4-202,Tenm4;Tenm4;Tenm4;Tenm4;Tenm4;Tenm4;Tenm4,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,26,23966,ENSMUSG00000048078,conserved gene but different region,7,96209790,96210024,235,*,235,24,0.680851064,0.901534527,0.10212766,7.94E-19,CpGisland,TRUE,U3,Pr-B
10216,cg25473942,0.000117969,0.00000935,12.61590265,9.87E-30,gain,yes,-0.00000157,0.0000159,-0.099066545,0.921149464,neg,ns,0.016117893,0.00465401,3.463227064,0.000608815,pos,ns,3.215514552,-0.000142656,0.000160051,-0.891314414,0.373451785,neg,ns,0.170389602,Hoxa11,Hoxa11_Exon,6,52245494,52245543,52245542,52245543,50,+,GGTGCCATTTAGTGGCGGGCTCAATGGCGTACTCTCTGAAGGTCACTTCG,Promoter (<=1kb),6,52242106,52245810,3705,2,Hoxa11-201,267,Hoxa10-201;Hoxa10-204;Hoxa11-201;Hoxa11-202,Hoxa10;Hoxa10;Hoxa11;Hoxa11,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,15,18,15396,ENSMUSG00000038210,mapped to different genes,6,52244948,52245549,602,*,602,70,0.674418605,1.022616968,0.11627907,2.62E-58,CpGisland,TRUE,NA,NRS
4957,cg19899882,0.0000214,0.00000399,5.357437636,0.000000165,gain,yes,0.000000671,0.00000678,0.098923044,0.921263308,pos,ns,0.00579697,0.001986295,2.918484177,0.003774726,pos,ns,2.423114597,-0.000142127,0.0000683,-2.080662698,0.038285638,neg,ns,0.029689812,Foxq1,Foxq1_Exon,13,31559460,31559509,31559460,31559461,50,-,CGGCCCTGGGGCAAGGACAACTACTGGATGCTCAACCCCAACAGCGAGTA,"Exon (Foxq1-201/Foxq1, exon 1 of 1)",13,31556134,31560976,4843,1,Foxq1-201,3326,A530084C06Rik-201;Foxq1-201,A530084C06Rik;Foxq1,-127;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,15220,ENSMUSG00000038415,conserved gene and region,13,31558747,31559461,715,*,715,84,0.676923077,1.026175506,0.117482518,2.82E-70,CpGisland,TRUE,NA,NRS
27661,cg13514846,-0.0000339,0.0000104,-3.260053429,0.001237814,loss,ns,-0.00000175,0.0000177,-0.098895621,0.921285064,neg,ns,-0.011970361,0.005182218,-2.309891254,0.021550856,neg,ns,1.666535478,0.000127443,0.000178216,0.715103792,0.475083113,pos,ns,0.736914722,Sdccag8,Sdccag8_Intron,1,176933468,176933517,176933468,176933469,50,+,CGGTAAACAAAGTTCACTTCTGACAGATGGATTGAATGACAGAAAGGTTG,"Intron (Sdccag8-204/Sdccag8, intron 14 of 16)",1,176814660,176956360,141701,1,Sdccag8-204,118808,Sdccag8-204;Sdccag8-201;Sdccag8-203,Sdccag8;Sdccag8;Sdccag8,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,20,76816,ENSMUSG00000026504,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13862,cg26399816,0.0000065,0.0000042,1.548036659,0.122633718,gain,ns,-0.000000705,0.00000713,-0.098810774,0.921352376,neg,ns,-0.0000123,0.00208906,-0.005877978,0.99531386,neg,ns,0.002039948,-0.0000661,0.0000718,-0.919977838,0.358299656,neg,ns,0.948584927,Rpl31-ps2,Rpl31-ps2_Intergenic_upstream,13,73117434,73117483,73117482,73117483,50,+,TGATCTATTTCAGTAAAATGTACAAACGAGCCATCCATTTTATGATTCCG,Distal Intergenic,13,73233395,73233737,343,1,Rpl31-ps2-201,-115912,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,8,621486,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11855,cg14980485,-0.000017,0.00000397,-4.292362012,0.0000237,loss,ns,0.000000666,0.00000675,0.098744581,0.92140489,pos,ns,-0.006250518,0.001976823,-3.161901313,0.001722517,neg,ns,2.763836548,0.000163254,0.000068,2.401402251,0.016920923,pos,ns,0.900585384,Gm13581,Gm13581_Intergenic_upstream,2,61199559,61199608,61199607,61199608,50,+,TGAGATAATGTACATAAAGCAGAGACCCTGCCATCTGACTAATTAACTCG,Distal Intergenic,2,61224792,61225082,291,1,Gm13581-201,-25184,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,3,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17111,cg05767157,0.000000111,0.00000154,0.072039837,0.94261666,gain,ns,0.000000259,0.00000262,0.098696556,0.921442992,pos,ns,0.000108267,0.000768941,0.140800346,0.888119116,pos,ns,0.051528782,0.0000107,0.0000264,0.405934644,0.685070672,pos,ns,0.968386381,Msi2,Msi2_Intron,11,88443751,88443800,88443799,88443800,50,+,ACAAAAGGAGCGACTGAATTGACTTCATACTAATTAGATTACTCCCTGCG,"Intron (Msi2-203/Msi2, intron 7 of 13)",11,88339382,88718229,378848,2,Msi2-203,274429,Msi2-203;Msi2-201;Msi2-207,Msi2;Msi2;Msi2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,21,36,76626,ENSMUSG00000069769,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5879,cg11163932,-0.00000807,0.00000241,-3.343392645,0.000929087,loss,ns,-0.000000404,0.0000041,-0.098608523,0.921512833,neg,ns,-0.000710619,0.001201691,-0.591348982,0.554717565,neg,ns,0.255928082,-0.0000283,0.0000413,-0.685851892,0.493319106,neg,ns,0.933821503,Bag6,Bag6_Exon,17,35142544,35142593,35142544,35142545,50,+,CGCCGTCGCCCACCAGATCACTCATCAGGCCATGGTGGCAGCTGTTGCCT,"Exon (Bag6-210/Bag6, exon 12 of 12)",17,35135178,35147305,12128,1,Bag6-202,7366,Bag6-202;Bag6-201;Bag6-203;Bag6-209;Bag6-210;Bag6-212;Bag6-214;Bag6-213;Bag6-211;Bag6-205;Bag6-206;Bag6-208;Bag6-216;Bag6-215;Bag6-207;Bag6-204,Bag6;Bag6;Bag6;Bag6;Bag6;Bag6;Bag6;Bag6;Bag6;Bag6;Bag6;Bag6;Bag6;Bag6;Bag6;Bag6,0;0;0;7316;0;7034;6826;0;0;6421;3971;2313;1385;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,224727,ENSMUSG00000024392,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21041,cg19526894,0.00000483,0.00000433,1.116986248,0.264865171,gain,ns,-0.000000724,0.00000735,-0.098560735,0.921550746,neg,ns,-0.003050562,0.002152951,-1.416921126,0.157510153,neg,ns,0.802691447,0.000107559,0.000074,1.452713427,0.147314772,pos,ns,0.893275768,Glyctk,Glyctk_Intergenic_downstream,9,106144391,106144440,106144391,106144392,50,-,CGCTGACAGCTCCTAATTGCATGTTGAAGCCATGTGATGGAGCCCGAGTT,Distal Intergenic,9,106155548,106157250,1703,2,Glyctk-205,12859,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,6,235582,ENSMUSG00000020258,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16141,cg21498538,-0.00000095,0.00000242,-0.3919241,0.695383587,loss,ns,-0.000000406,0.00000412,-0.098542335,0.921565344,neg,ns,0.001392051,0.001205834,1.154429994,0.249213078,pos,ns,0.603429171,0.0000123,0.0000415,0.297179414,0.766528571,pos,ns,0.941592038,Lin52,Lin52_Intron,12,84520827,84520876,84520827,84520828,50,-,CGTTATTCGAATAGACAGGAGTGAGAGAAATTAATCAATCCAAATGCAAT,"Intron (Lin52-201/Lin52, intron 5 of 5)",12,84451422,84531573,80152,1,Lin52-201,69405,Lin52-201;Lin52-202;Lin52-203,Lin52;Lin52;Lin52,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,6,217708,ENSMUSG00000085793,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8533,cg10561550,0.0000521,0.0000064,8.134565093,1.01E-14,gain,yes,-0.00000107,0.0000109,-0.098534947,0.921571206,neg,ns,0.0007143,0.003186161,0.224188334,0.822758444,pos,ns,0.084727652,0.000178828,0.000109572,1.632060745,0.103682044,pos,ns,0.144042432,Btrc,Btrc_Intron,19,45302416,45302465,45302464,45302465,50,+,GCATCACTGACATTTATATTAGAGGATATTGATGGCAGGAGCTGTGACCG,"Intron (Gm28578-211/Gm28578-211, intron 1 of 1)",19,45363734,45507736,144003,1,Btrc-204,-61269,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,63,98,12234,ENSMUSG00000025217,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
21898,cg05211590,-0.0000475,0.0000132,-3.60632459,0.000361824,loss,ns,0.0000022,0.0000224,0.098249023,0.921798052,pos,ns,-0.009381618,0.006559042,-1.430333573,0.153628444,neg,ns,0.813528369,-0.0000865,0.000225565,-0.383685897,0.701474277,neg,ns,0.733198798,Nav3,Nav3_Intergenic_downstream,10,109667450,109667499,109667498,109667499,50,-,ATTTATTTTTTATGACAGATTCCATTTTCTGCTGCTGGCATGATTACACG,Distal Intergenic,10,109714302,109723801,9500,2,Nav3-203,56351,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,4,260315,ENSMUSG00000020181,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3686,cg24853943,-0.00000617,0.00000252,-2.452256776,0.014747405,loss,ns,0.000000419,0.00000428,0.098073567,0.921937258,pos,ns,0.003004288,0.00125265,2.398345731,0.017060129,pos,ns,1.768017682,-0.000140315,0.0000431,-3.257192803,0.001249935,neg,ns,0.945338199,Kidins220,Kidins220_Exon,12,25040522,25040571,25040522,25040523,50,+,CGTCCATCAGTAAAAACGAGTTTGCCCAGAGATCAGAACAATGGCCTAGT,"Exon (Kidins220-201/Kidins220, exon 25 of 32)",12,24974925,25059697,84773,1,Kidins220-201,65597,Kidins220-201;Kidins220-202;Kidins220-210;Kidins220-208;Kidins220-206;Kidins220-203,Kidins220;Kidins220;Kidins220;Kidins220;Kidins220;Kidins220,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,77480,ENSMUSG00000036333,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20194,cg10810799,0.0000279,0.00000469,5.954599882,7.06E-09,gain,yes,-0.00000078,0.00000796,-0.098010431,0.92198735,neg,ns,0.004487271,0.002332354,1.92392338,0.055279564,pos,ns,1.257435392,-0.000201542,0.0000802,-2.512692922,0.012488686,neg,ns,0.055059432,Hoxc12,Hoxc12_fiveUTR,15,102936798,102936847,102936846,102936847,50,-,TATGTTTAATGTCAGATAGCAATAAAGTAGAAGCTGCCGGTCGGGCCCCG,Promoter (<=1kb),15,102936757,102938609,1853,1,Hoxc12-201,41,Hoxc12-201,Hoxc12,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,6,15421,ENSMUSG00000050328,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
6792,cg16290725,-0.0000062,0.0000139,-0.445867281,0.656004357,loss,ns,-0.00000232,0.0000236,-0.098009063,0.921988436,neg,ns,-0.01107051,0.006923713,-1.598926694,0.110855572,neg,ns,0.955242473,0.000165594,0.000238106,0.695463244,0.487286038,pos,ns,0.571338874,Gm48198,Gm48198_Intergenic_upstream,10,38553718,38553767,38553718,38553719,50,-,CGACCCTTTACTTTGCAGGGATACAATAGCCTTTGATATGAGATGGTGGG,Distal Intergenic,10,38433979,38434135,157,2,Gm48198-201,-119632,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,3,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10330,cg21795232,-0.00000357,0.00000408,-0.873999059,0.382795327,loss,ns,-0.000000679,0.00000693,-0.097943592,0.922040382,neg,ns,-0.0045839,0.002030622,-2.257387553,0.02467951,neg,ns,1.60766346,0.000100833,0.0000698,1.443919422,0.14977149,pos,ns,0.918132907,Slc35f1,Slc35f1_Exon,10,53062492,53062541,53062540,53062541,50,-,CTGGTTCTTCCTGCTGATCCGGTACAAGGCTGTGCATTTCATCGGCATCG,"Exon (Slc35f1-201/Slc35f1, exon 4 of 8)",10,52690533,53111622,421090,1,Slc35f1-201,371959,Slc35f1-201,Slc35f1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,215085,ENSMUSG00000038602,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6626,cg11923212,-0.00000246,0.00000294,-0.836214883,0.403678118,loss,ns,0.000000488,0.00000499,0.097808014,0.922147952,pos,ns,0.003181191,0.001461678,2.176396663,0.030280213,pos,ns,1.518841078,-0.000110727,0.0000503,-2.202774392,0.028346268,neg,ns,0.927611382,Zfp536,Zfp536_Intergenic_upstream,7,37832817,37832866,37832817,37832818,50,-,CGAAGACACAGAATTTAAACATGATTAATTTTTAGGCTTTTTTGTGAATA,Distal Intergenic,7,37569629,37773641,204013,2,Zfp536-208,-59225,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,112,243937,ENSMUSG00000043456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7212,cg15825447,-0.000000258,0.00000585,-0.044073825,0.964873933,loss,ns,0.000000972,0.00000994,0.097806471,0.922149176,pos,ns,-0.001173446,0.002911615,-0.403022278,0.687209641,neg,ns,0.162910756,0.000164902,0.00010013,1.646876261,0.10059677,pos,ns,0.932856315,Gria3,Gria3_Exon,X,41654912,41654961,41654912,41654913,50,-,CGGTGACTCCAAGGTCAGCCTCAATGTCACCACAACCGGGTACCCTTAGT,"Exon (Gria3-202/Gria3, exon 15 of 17)",20,41401128,41676585,275458,1,Gria3-202,253784,Gria3-202;Gria3-201;Gria3-208;Gria3-206;Gria3-209,Gria3;Gria3;Gria3;Gria3;Gria3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,26,53623,ENSMUSG00000001986,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12168,cg26659890,0.0000813,0.0000202,4.028373337,0.0000707,gain,ns,0.00000335,0.0000343,0.097721141,0.922216879,pos,ns,0.044459437,0.010045695,4.42572029,0.0000133,pos,ns,4.875160576,-0.000366008,0.000345471,-1.05944878,0.29022022,neg,ns,0.297094989,Map2k5,Map2k5_Intron,9,63187180,63187229,63187228,63187229,50,-,ATAATAAAGTGGCCTAGATAAAGTATTAGCCAGCGATTGATCTCAAACCG,"Intron (Map2k5-201/Map2k5, intron 21 of 21)",9,63163768,63377902,214135,2,Map2k5-201,190673,Map2k5-201,Map2k5,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,34,37,23938,ENSMUSG00000058444,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8499,cg00409684,0.0000716,0.00000729,9.830780923,4.97E-20,gain,yes,-0.00000121,0.0000124,-0.097539555,0.922360957,neg,ns,0.012457828,0.003627258,3.434503044,0.000674466,pos,ns,3.171040254,-0.000139894,0.000124741,-1.121475424,0.262953499,neg,ns,0.17218435,Lbx1,Lbx1_Intergenic_downstream,19,45231295,45231344,45231295,45231296,50,-,CGGGGACCTAATCCATCAAATTGTCTACAAATTGTGAAGAAAATTCAAAA,Distal Intergenic,19,45232684,45235812,3129,2,Lbx1-201,4517,Lbx1-201,Lbx1,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,30,50,16814,ENSMUSG00000025216,mapped to different genes,19,45230944,45231296,353,*,353,46,0.776203966,0.880346978,0.130311615,4.39E-41,CpGisland,TRUE,NA,NRS
19431,cg16667475,-0.0000261,0.000005,-5.220440525,0.000000328,loss,yes,-0.000000827,0.00000849,-0.097328124,0.922528718,neg,ns,-0.005901329,0.00248814,-2.371782879,0.018313046,neg,ns,1.737239422,0.000131636,0.0000856,1.53839588,0.124971903,pos,ns,0.901363438,Prpf40b,Prpf40b_fiveUTR,15,99303236,99303285,99303284,99303285,50,-,ATCTCTGTGCCCATCCTGGGTCCTATGACTTTTCTCTCCCTCAACAGTCG,Promoter (<=1kb),15,99303283,99316499,13217,1,Prpf40b-201,0,Prpf40b-205;Prpf40b-214;Prpf40b-206;Prpf40b-209;Prpf40b-211;Prpf40b-212;Prpf40b-208;Prpf40b-201;Prpf40b-202;Prpf40b-210,Prpf40b;Prpf40b;Prpf40b;Prpf40b;Prpf40b;Prpf40b;Prpf40b;Prpf40b;Prpf40b;Prpf40b,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,10,54614,ENSMUSG00000023007,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12127,cg09062632,-0.0000065,0.00000422,-1.538838112,0.12486389,loss,ns,0.000000698,0.00000717,0.097290348,0.922558691,pos,ns,-0.000286996,0.002101932,-0.136539206,0.891483661,neg,ns,0.049886612,-0.0000642,0.0000723,-0.888402142,0.375013276,neg,ns,0.90743365,Zfp618,Zfp618_Intron,4,63058078,63058127,63058078,63058079,50,+,CGAATTGCCTGTTTCTGCCATTTGCACAAAATGTGAAATGCAGCTAATGT,"Intron (Zfp618-201/Zfp618, intron 2 of 11)",4,62965573,63115748,150176,1,Zfp618-201,92505,Zfp618-201;Zfp618-203;Zfp618-202,Zfp618;Zfp618;Zfp618,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,12,72701,ENSMUSG00000028358,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5432,cg26365036,-0.000000394,0.000000442,-0.890786348,0.373734621,loss,ns,0.000000073,0.000000751,0.097236195,0.92260166,pos,ns,-0.000325498,0.000219879,-1.480352926,0.139794659,neg,ns,0.85450942,0.00000957,0.00000756,1.265306667,0.206711646,pos,ns,0.988741964,Mvb12b,Mvb12b_Intron,2,33941579,33941628,33941579,33941580,50,+,CGATTACTATGAATGCCACCATCTGGTACGCCACGTGGACATCATAATCT,"Intron (Gm13403-201/Gm13403-201, intron 1 of 1)",2,33729953,33887946,157994,2,Mvb12b-201,-53633,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,28,47,72543,ENSMUSG00000038740,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20724,cg07028964,-0.00000642,0.00000798,-0.804782305,0.421562095,loss,ns,-0.00000132,0.0000136,-0.097228489,0.922607774,neg,ns,0.005549371,0.003972942,1.396791439,0.163475432,pos,ns,0.786547507,-0.000154672,0.000136629,-1.132060209,0.258484023,neg,ns,0.878523514,Slc16a1,Slc16a1_Exon,3,104652759,104652808,104652807,104652808,50,+,AACTTGAATCCAGCTCTGACCATGATTGGCAAGTATTTCTACAAGAGGCG,"Exon (Slc16a1-201/Slc16a1, exon 4 of 5)",3,104638668,104658462,19795,1,Slc16a1-201,14091,Slc16a1-201,Slc16a1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,20501,ENSMUSG00000032902,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2584,cg13455248,0.0000281,0.00000673,4.178995715,0.0000381,gain,ns,0.00000111,0.0000114,0.097223149,0.922612012,pos,ns,0.016146881,0.003347206,4.823988336,0.00000221,pos,ns,5.65552194,-0.00059239,0.00011511,-5.146287421,0.000000473,neg,yes,0.722306801,Rbm10,Rbm10_Exon,X,20641219,20641268,20641267,20641268,50,+,ACTTGCAGGACGCTACACGATGGATGGAAGCCAATCAGGTTGCTTTGCCG,"Exon (Rbm10-205/Rbm10, exon 6 of 24)",20,20617503,20650888,33386,1,Rbm10-205,23716,Rbm10-205;Rbm10-204;Rbm10-203;Rbm10-206;Rbm10-201;Rbm10-202;Rbm10-207,Rbm10;Rbm10;Rbm10;Rbm10;Rbm10;Rbm10;Rbm10,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,14,236732,ENSMUSG00000031060,conserved gene but different region,X,20641104,20641268,165,*,165,11,0.56969697,0.821638751,0.066666667,0.000000724,CpGisland,TRUE,U10,Tr-S
22166,cg00100281,-0.000106253,0.0000117,-9.07065546,1.39E-17,loss,yes,0.00000193,0.0000199,0.097114336,0.922698352,pos,ns,0.010941293,0.005830141,1.876677299,0.061501531,pos,ns,1.211114076,-0.000658036,0.000200498,-3.282006633,0.00114836,neg,ns,0.460517949,Mn1,Mn1_Intergenic_downstream,5,111536158,111536207,111536206,111536207,50,-,GGTGTCTGCTAAGTGAGGTAATAGGCAATTGAGTGGGTTCCGCTTTGCCG,Distal Intergenic,5,111417442,111457033,39592,1,Mn1-201,118765,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,12,433938,ENSMUSG00000070576,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13395,cg15221004,0.0000584,0.0000122,4.772200886,0.00000281,gain,ns,0.00000202,0.0000208,0.097112657,0.922699684,pos,ns,0.012407002,0.00609344,2.036124606,0.042587627,pos,ns,1.370716559,-0.000178989,0.000209553,-0.854146638,0.393683304,neg,ns,0.021853567,Nr2f2,Nr2f2_Exon,7,70359935,70359984,70359983,70359984,50,-,TGGCACTGGTTGCGATGGTGCTGGTCGATGGGACAGTTCCGGTTGGCGCG,Promoter (<=1kb),7,70351944,70360593,8650,2,Nr2f2-201,609,Nr2f2-201;Nr2f2-203;Nr2f2-202;Nr2f2-205;Nr2f2-204;Nr2f2-206,Nr2f2;Nr2f2;Nr2f2;Nr2f2;Nr2f2;Nr2f2,0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,24,69,11819,ENSMUSG00000030551,conserved gene and region,7,70359750,70360467,718,*,718,76,0.703342618,0.857367313,0.105849582,8.30E-60,CpGisland,TRUE,U1,Pr-A
26160,cg05765137,0.00000912,0.0000022,4.137825722,0.0000452,gain,ns,0.000000363,0.00000375,0.097047376,0.922751483,pos,ns,0.003653467,0.001097328,3.329420389,0.000975263,pos,ns,3.010878189,-0.000101481,0.0000377,-2.689151423,0.007551025,neg,ns,0.034548136,Lmo4,Lmo4_Exon,3,144201908,144201957,144201956,144201957,50,-,GCACCGGCTGTGCCAATAGCTGTCCATGGCATAGAGCAGAAAGCGGTCCG,Promoter (<=1kb),3,144188530,144202396,13867,2,Lmo4-203,439,Lmo4-203;Lmo4-201;Lmo4-202;Lmo4-207;Lmo4-208;Lmo4-205;Lmo4-204,Lmo4;Lmo4;Lmo4;Lmo4;Lmo4;Lmo4;Lmo4,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,18,54,16911,ENSMUSG00000028266,conserved gene and region,3,144201781,144202038,258,*,258,19,0.635658915,0.729138777,0.073643411,2.76E-12,CpGisland,TRUE,U1,Pr-A
23038,cg05818379,-0.000017,0.00000694,-2.449944219,0.014840601,loss,ns,0.00000114,0.0000118,0.09685455,0.922904489,pos,ns,-0.008553901,0.003452564,-2.477550495,0.01376141,neg,ns,1.861337077,0.000233688,0.000118733,1.968172299,0.049939123,pos,ns,0.088636334,Spred1,Spred1_Intron,2,117123112,117123161,117123160,117123161,50,+,TACCCCTGTTCTGAGAATGTTGACACAGTTATGTGGGAAATATCAGTTCG,"Intron (Spred1-201/Spred1, intron 1 of 6)",2,117121374,117182279,60906,1,Spred1-201,1738,Spred1-201;Spred1-202,Spred1;Spred1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,6,114715,ENSMUSG00000027351,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
6393,cg08056859,0.00000716,0.00000465,1.539157067,0.124786031,gain,ns,-0.000000765,0.0000079,-0.09683117,0.922923041,neg,ns,-0.001340506,0.002314245,-0.57924115,0.562847133,neg,ns,0.249609541,-0.0000319,0.0000796,-0.400837027,0.688816241,neg,ns,0.920873844,Gm1043,Gm1043_fiveUTR,5,37124927,37124976,37124927,37124928,50,+,CGCCAAGGATCAGAACGAGCTGTTAGAATTCAGAGTGCTAGAACTCGAAG,5' UTR,5,37085370,37229342,143973,1,Gm1043-205,39557,Gm1043-205;Jakmip1-201;Jakmip1-202;Jakmip1-212;Jakmip1-215;Jakmip1-203,Gm1043;Jakmip1;Jakmip1;Jakmip1;Jakmip1;Jakmip1,0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,3,381634,ENSMUSG00000117286,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2528,cg11735942,-0.0000513,0.0000093,-5.518368213,7.23E-08,loss,yes,-0.00000153,0.0000158,-0.096814034,0.922936639,neg,ns,-0.010025691,0.004626427,-2.167048411,0.030992428,neg,ns,1.508744402,0.0000611,0.000159102,0.383913445,0.701305785,pos,ns,0.778537579,Pkhd1,Pkhd1_Intron,1,20303123,20303172,20303123,20303124,50,-,CGTGAAATTCTTAATTAAGCAATAAATAGAGAGTGGGGTGTCAGCAGATG,"Intron (Pkhd1-201/Pkhd1, intron 50 of 66)",1,20057779,20618064,560286,2,Pkhd1-201,314892,Pkhd1-201,Pkhd1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,25,241035,ENSMUSG00000043760,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5969,cg17971303,0.0000242,0.000005,4.835553454,0.00000209,gain,ns,0.000000821,0.00000849,0.096781993,0.922962063,pos,ns,-0.002173318,0.002486292,-0.874120459,0.382729321,neg,ns,0.417108265,-0.000102864,0.0000855,-1.203043295,0.229877544,neg,ns,0.763456652,Slit3,Slit3_Exon,11,35616829,35616878,35616877,35616878,50,+,GGGGCTTTCCTTTGTGCTTGATCTAACCATGTGGTGGAACGATGGAAACG,"Exon (Mir218-2-201/Mir218-2-201, exon 1 of 1)",11,35121224,35708507,587284,1,Slit3-201,495605,Slit3-201;Slit3-202,Slit3;Slit3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,21,20564,ENSMUSG00000056427,mapped to different genes,11,35616700,35617001,302,*,302,18,0.602649007,0.686363636,0.059602649,4.00E-10,CpGisland,TRUE,U15,NS
11215,cg10483776,-0.00000123,0.00000142,-0.867529191,0.38632316,loss,ns,-0.000000234,0.00000242,-0.09671615,0.92301431,neg,ns,-0.000374066,0.00070765,-0.528603239,0.597458949,neg,ns,0.223691929,0.0000128,0.0000243,0.525632015,0.599519686,pos,ns,0.036613496,Sin3a,Sin3a_fiveUTR,9,57072049,57072098,57072049,57072050,50,+,CGCCTGGCTCGGAAGGTATGTTAAACAGCTGCTTTTAATTTGGTCCCCCC,Promoter (<=1kb),9,57072040,57089496,17457,1,Sin3a-209,9,Sin3a-209;Sin3a-204;Sin3a-208;Sin3a-206;Sin3a-202,Sin3a;Sin3a;Sin3a;Sin3a;Sin3a,0;0;0;0;-4530,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,4,20466,ENSMUSG00000042557,conserved gene and region,9,57071743,57072060,318,*,318,17,0.531446541,0.774054983,0.05345912,7.06E-09,CpGisland,TRUE,U1,Pr-A
18065,cg23212057,-0.0000074,0.00000352,-2.103527266,0.036225182,loss,ns,-0.000000578,0.00000598,-0.096670948,0.923050178,neg,ns,-0.003915525,0.001750572,-2.236712316,0.02601601,neg,ns,1.584759303,0.0000389,0.0000602,0.64617402,0.518644725,pos,ns,0.936284777,Pola1,Pola1_Intron,X,93458053,93458102,93458101,93458102,50,+,AAAACGATTAACACAAATGCTTTGTCAGATCAAAGATAAAACCTGCACCG,"Intron (Pola1-201/Pola1, intron 34 of 36)",20,93304767,93632155,327389,2,Pola1-201,174053,Pola1-201,Pola1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,59,62,18968,ENSMUSG00000006678,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13098,cg26234132,-0.0000296,0.00000811,-3.655060837,0.000301893,loss,ns,-0.00000133,0.0000138,-0.096574119,0.923127014,neg,ns,-0.008796262,0.004037232,-2.178785215,0.030100519,neg,ns,1.521426019,0.000191111,0.00013884,1.37647969,0.169666552,pos,ns,0.734412012,Lrp2,Lrp2_Exon,2,69432997,69433046,69433045,69433046,50,+,CTTACTTGCATTTGGGGAGGTCAGTCTCATCAAAATAGCAATTTCCTCCG,"Exon (Lrp2-201/Lrp2, exon 72 of 79)",2,69424340,69586065,161726,2,Lrp2-201,153019,Lrp2-201,Lrp2,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,2,14725,ENSMUSG00000027070,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25409,cg10825669,-0.000000239,0.00000105,-0.227647418,0.820070421,loss,ns,0.000000172,0.00000178,0.096548185,0.923147593,pos,ns,-0.000108742,0.000522134,-0.208264788,0.835158988,neg,ns,0.07823084,-0.00000924,0.000018,-0.514562694,0.607225292,neg,ns,0.970784252,Cux1,Cux1_threeUTR,5,136274567,136274616,136274615,136274616,50,+,ACCTTGGCCTATGGCGATTTTGCCCTGTGGCCCGCAGGGCGGTAAGTGCG,3' UTR,5,136248135,136360018,111884,2,Cux1-205,85402,Cux1-205;Cux1-207;Cux1-211;Cux1-203;Cux1-213;Cux1-201;Cux1-204;Cux1-209;Cux1-212;Cux1-206;Cux1-202,Cux1;Cux1;Cux1;Cux1;Cux1;Cux1;Cux1;Cux1;Cux1;Cux1;Cux1,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,8,21,13047,ENSMUSG00000029705,conserved gene and region,5,136274581,136275256,676,*,676,67,0.721893491,0.760800914,0.099112426,1.01E-50,CpGisland,TRUE,U10,Tr-S
15791,cg12961259,0.00000376,0.00000425,0.886518488,0.376025402,gain,ns,0.000000696,0.00000721,0.096469879,0.923209731,pos,ns,0.00039712,0.002113277,0.187916509,0.851065045,pos,ns,0.070037247,-0.000129778,0.0000727,-1.785720952,0.075121865,neg,ns,0.552701291,Mef2c,Mef2c_Intergenic_upstream,13,83481465,83481514,83481465,83481466,50,-,CGGAAAACTTGGCTCAGATATAGCGTGGACAAGCTTGCCTTAATCACATT,Distal Intergenic,13,83504034,83663343,159310,1,Mef2c-218,-22569,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,41,17260,ENSMUSG00000005583,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17646,cg10710448,0.0000359,0.0000038,9.453074019,8.43E-19,gain,yes,0.000000623,0.00000645,0.096457692,0.923219402,pos,ns,0.005002139,0.001890929,2.645334155,0.008577025,pos,ns,2.066663338,-0.0000311,0.000065,-0.478859759,0.632375983,neg,ns,0.070056704,Zic1,Zic1_Exon,9,91364137,91364186,91364185,91364186,50,-,CGGATGTGGTTAACCAGTTTGTATTTGGCTTTGAAGGGCTTGCCCTCGCG,"Exon (Zic1-201/Zic1, exon 1 of 3)",9,91358058,91365768,7711,2,Zic1-201,1582,Zic1-201;Zic1-202;Zic1-203;Zic4-208;Zic4-206;Zic4-207;Zic4-211;Zic4-204,Zic1;Zic1;Zic1;Zic4;Zic4;Zic4;Zic4;Zic4,0;0;-1083;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,10,22771,ENSMUSG00000032368,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
9475,cg25516236,-0.00000906,0.00000729,-1.242752465,0.214898244,loss,ns,-0.00000119,0.0000124,-0.096369611,0.923289297,neg,ns,-0.00194209,0.003629008,-0.535157306,0.592924757,neg,ns,0.227000416,-0.000108134,0.000124801,-0.866447531,0.386914898,neg,ns,0.859982173,AC124542.1,AC124542.1_Intergenic_downstream,12,48826473,48826522,48826473,48826474,50,+,CGAGATAGATCAATCAGATTGTTTTTATTGGTCTACTGCGTACCATAGAC,Distal Intergenic,12,48903821,48906044,2224,2,AC124542.1-201,79522,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14712,cg18380508,0.0000881,0.0000188,4.683544425,0.00000422,gain,ns,0.00000308,0.000032,0.096326367,0.923323613,pos,ns,0.02783939,0.009361932,2.973680105,0.003173414,pos,ns,2.498473209,-0.000699401,0.000321956,-2.17234825,0.030586896,neg,ns,0.455446973,Gm21816,Gm21816_Intron,16,77421580,77421629,77421580,77421581,50,+,CGATGAGTGAAAAGGCACAATGGCAAAATCAGACAGACTTCTTTTCAAAT,"Intron (Mir99ahg-207/Mir99ahg-207, intron 4 of 7)",16,77400847,77401208,362,1,Gm21816-201,20733,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,8,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
19659,cg07797757,-0.0000185,0.00000497,-3.727586298,0.000229747,loss,ns,0.000000812,0.00000845,0.096187773,0.923433593,pos,ns,-0.005218984,0.002474453,-2.109146511,0.035733589,neg,ns,1.446923365,0.0000349,0.0000851,0.40995492,0.682122172,pos,ns,0.905174744,Gm28267,Gm28267_Intergenic_upstream,9,100325351,100325400,100325399,100325400,50,+,GATTCACACGATGTCTGCTAAGAAACCCAATTTCCATGATGAATTGCCCG,Distal Intergenic,9,100404495,100404759,265,1,Gm28267-201,-79095,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,29,29,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17862,cg20206504,-0.0000134,0.00000537,-2.490901955,0.013264908,loss,ns,0.000000875,0.00000913,0.095932401,0.923636246,pos,ns,-0.005665866,0.002673506,-2.119264426,0.034862844,neg,ns,1.457637186,0.000121195,0.0000919,1.318172943,0.188418916,pos,ns,0.086496736,Phf21a,Phf21a_Intron,2,92182810,92182859,92182810,92182811,50,-,CGCCGGATTATACGTGGCCGATTCCCAGTGATTGCCCTGCTACACAAAGC,"Intron (Phf21a-201/Phf21a, intron 1 of 15)",2,92093117,92364666,271550,1,Phf21a-201,89693,Phf21a-201;Phf21a-202;Phf21a-204;Phf21a-209;Phf21a-208;Phf21a-207;Phf21a-212;Phf21a-219;Phf21a-206;Phf21a-216;Phf21a-221;Phf21a-220;Phf21a-210;Phf21a-205;Phf21a-211,Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a;Phf21a,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,21,192285,ENSMUSG00000058318,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
256,cg23757896,-0.00000464,0.0000056,-0.828747039,0.407885186,loss,ns,-0.000000912,0.00000952,-0.095818028,0.92372701,neg,ns,-0.007282694,0.002788773,-2.61143256,0.009454984,neg,ns,2.024339224,0.0000766,0.0000959,0.798444404,0.425223894,pos,ns,0.839293347,Mfsd2b,Mfsd2b_fiveUTR,12,4871437,4871486,4871485,4871486,50,-,TTGGGGACCCCACCAATGCCATAGCACACCTTTGTACAGAATGAGAGGCG,5' UTR,12,4862440,4874355,11916,2,Mfsd2b-207,2869,Mfsd2b-207;Mfsd2b-202;Mfsd2b-203;Mfsd2b-201;Mfsd2b-204;Mfsd2b-205;Mfsd2b-208;Mfsd2b-206,Mfsd2b;Mfsd2b;Mfsd2b;Mfsd2b;Mfsd2b;Mfsd2b;Mfsd2b;Mfsd2b,0;0;0;0;0;0;-2176;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,1,432628,ENSMUSG00000037336,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
21150,cg03391245,-0.0000021,0.00000141,-1.483107029,0.139061892,loss,ns,-0.00000023,0.0000024,-0.095785975,0.923752446,neg,ns,0.000853441,0.000704014,1.212249116,0.226340122,pos,ns,0.645238455,-0.0000449,0.0000242,-1.853144011,0.064811811,neg,ns,0.965111252,Gm17304,Gm17304_Intron,5,106565538,106565587,106565538,106565539,50,+,CGGGAGAAAGAATTAATCCTCTTGGTCTAAACTGGCTTCAACTTTGAAGC,"Intron (Gm28050-202/Gm28050-202, intron 1 of 2)",5,106609098,106609201,104,1,Gm17304-201,-43511,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,35,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7603,cg20595744,-0.000128033,0.0000599,-2.138503451,0.033257286,loss,ns,0.00000973,0.000101711,0.09569689,0.923823142,pos,ns,0.096294556,0.029798023,3.231575315,0.001363497,pos,ns,2.865345773,-0.002540392,0.001024752,-2.47903236,0.013705501,neg,ns,0.695000707,Zbtb20,Zbtb20_Exon,16,43410500,43410549,43410500,43410501,50,+,CGACAATCGGGTAATTATGGTTTATGAATTTCAGCTTTAATCTGTAGTTC,"Exon (Gm15713-201/Gm15713-201, exon 5 of 5)",16,42875881,43463175,587295,1,Zbtb20-209,534619,Zbtb20-209;Zbtb20-211;Zbtb20-217;Zbtb20-218;Zbtb20-204;Zbtb20-215;Zbtb20-201;Zbtb20-203;Zbtb20-214;Zbtb20-213;Zbtb20-219;Zbtb20-216,Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,17,98,56490,ENSMUSG00000022708,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4666,cg04272551,-0.000000516,0.000000597,-0.86358792,0.388481964,loss,ns,9.71E-08,0.00000101,0.095695233,0.923824458,pos,ns,0.000236421,0.000297335,0.795131907,0.427145133,pos,ns,0.369424538,-0.0000175,0.0000102,-1.710195517,0.088230263,neg,ns,0.019655101,Hes1,Hes1_Intergenic_downstream,16,30070305,30070354,30070353,30070354,50,+,TGGCAGGAAATGAATAGCTCCCAGATGAGCTCAGGCAACCTGAGAGGTCG,Distal Intergenic,16,30066338,30067319,982,1,Hes1-204,3967,Hes1-202;Hes1-201;Hes1-203;Hes1-204,Hes1;Hes1;Hes1;Hes1,0;0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,20,15205,ENSMUSG00000022528,conserved gene and region,16,30070353,30070881,529,*,529,54,0.75047259,0.72631579,0.102079395,9.59E-42,CpGisland,TRUE,U1,Pr-A
7219,cg09184654,-0.0000251,0.00000632,-3.976581344,0.0000871,loss,ns,-0.00000103,0.0000107,-0.095608,0.923893685,neg,ns,-0.008854656,0.003144577,-2.815849735,0.005176525,neg,ns,2.285961668,0.000114237,0.000108142,1.056363498,0.291624702,pos,ns,0.909589919,Cntfr,Cntfr_Intron,4,41665683,41665732,41665731,41665732,50,+,AAAGGAGTGACTTGCTGCAGCTGGAGCCCAGCTGAGGGGCCGGGTGGGCG,"Intron (Cntfr-203/Cntfr, intron 4 of 9)",4,41657498,41695442,37945,2,Cntfr-203,29710,Cntfr-203;Cntfr-204;Cntfr-206;Cntfr-201;Cntfr-202,Cntfr;Cntfr;Cntfr;Cntfr;Cntfr,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,12,12804,ENSMUSG00000028444,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26348,cg12237679,0.0000577,0.00000836,6.898556368,2.96E-11,gain,yes,0.00000136,0.0000142,0.095406765,0.924053385,pos,ns,0.004295111,0.004161958,1.031992889,0.302879893,pos,ns,0.518729558,0.0000925,0.000143129,0.646126235,0.518675627,pos,ns,0.248115401,Kiz,Kiz_Intron,2,146836843,146836892,146836843,146836844,50,-,CGGTTTTTAAGAAGCTGGCAATTTGAACCGGCTGGGTGTTATTTAGTGCA,"Intron (Gm14114-201/Gm14114-201, intron 1 of 1)",2,146855864,146970097,114234,1,Kiz-201,-19021,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,29,228730,ENSMUSG00000074749,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
1203,cg07576998,-0.0000486,0.0000153,-3.183565248,0.001602472,loss,ns,-0.00000247,0.0000259,-0.095338535,0.924107533,neg,ns,0.015565928,0.007597687,2.048771971,0.041326129,pos,ns,1.383775278,-0.000961486,0.000261284,-3.679851873,0.00027512,neg,ns,0.839321888,Bcor,Bcor_Intron,X,12061268,12061317,12061268,12061269,50,+,CGAAAGTGCACTGAAAGGCCGCTTTAGGGGCTAATCTTTTAAAGGGCGGC,"Intron (Bcor-202/Bcor, intron 2 of 14)",20,12036740,12080553,43814,2,Bcor-202,19236,Bcor-202;Bcor-203;Bcor-204;Bcor-206;Bcor-201;Bcor-207;Bcor-205,Bcor;Bcor;Bcor;Bcor;Bcor;Bcor;Bcor,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,56,74,71458,ENSMUSG00000040363,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18843,cg24720651,-0.0000582,0.00000927,-6.274670811,1.18E-09,loss,yes,-0.0000015,0.0000157,-0.095199295,0.924218037,neg,ns,-0.007467185,0.00461295,-1.618744069,0.106519247,neg,ns,0.97257191,-0.00000836,0.000158639,-0.052704693,0.958001146,neg,ns,0.854965831,Gk2,Gk2_Intergenic_upstream,5,97655516,97655565,97655564,97655565,50,+,AAAAATTGAACTACTGAAATTCAGTCATATGCTTTCTTCCCAGGGAGTCG,Distal Intergenic,5,97455142,97457021,1880,2,Gk2-201,-198495,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,13,14626,ENSMUSG00000050553,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23480,cg11690772,-0.0000337,0.0000101,-3.338118213,0.000946274,loss,ns,0.00000163,0.0000171,0.095171583,0.92424003,pos,ns,-0.000960399,0.005024263,-0.191152152,0.848531521,neg,ns,0.07133202,-0.000214256,0.000172784,-1.240023939,0.215904333,neg,ns,0.339928729,Gm9267,Gm9267_Intergenic_upstream,12,118564552,118564601,118564600,118564601,50,+,TACTGGAGCCAGAAAATTGTTGTTTCAAATGTTACAGTACAGGAAAATCG,Distal Intergenic,12,118602677,118603080,404,1,Gm9267-201,-38076,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,20,668611,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18971,cg06950738,-0.0000349,0.0000138,-2.532220035,0.011827721,loss,ns,0.00000222,0.0000234,0.094898663,0.92445663,pos,ns,-0.000450235,0.006864417,-0.06558973,0.947746743,neg,ns,0.023307699,-0.000500401,0.000236067,-2.119745892,0.034821867,neg,ns,0.548692218,Dach1,Dach1_Intron,14,98083605,98083654,98083653,98083654,50,+,TGCCCTTTTCTTCTCTCACTTATCATTAGCATCACTTTAATCTCCTAGCG,"Intron (Dach1-201/Dach1, intron 1 of 10)",14,97786853,98169543,382691,2,Dach1-201,85889,Dach1-201;Dach1-202;Dach1-203,Dach1;Dach1;Dach1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,76,13134,ENSMUSG00000055639,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11307,cg13181002,-0.0000258,0.0000073,-3.533596238,0.000472361,loss,ns,-0.00000118,0.0000124,-0.09489044,0.924463156,neg,ns,0.002686278,0.003634052,0.739196517,0.460347013,pos,ns,0.33691467,-0.00028576,0.000124975,-2.286542758,0.022896574,neg,ns,0.860053014,Gm13531,Gm13531_Intergenic_upstream,2,57523118,57523167,57523118,57523119,50,-,CGTGAAATGATGTATGTAATAAGCATCAGGCTCACTTTTTACTTGGGGAA,Distal Intergenic,2,57425167,57425709,543,2,Gm13531-201,-97458,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,10,271788,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15234,cg09581674,0.000000385,0.00000128,0.299978581,0.764394542,gain,ns,0.000000207,0.00000218,0.094801126,0.92453404,pos,ns,-0.000254696,0.000639197,-0.398461923,0.690564021,neg,ns,0.160796053,0.0000189,0.000022,0.861565277,0.389592714,pos,ns,0.965899707,Atl2,Atl2_threeUTR,17,79852781,79852830,79852829,79852830,50,-,AAATTTGCATAGGTTTCTTCAATTTCAGCTTCAAGCTGGTCCTGATAACG,3' UTR,17,79848390,79896123,47734,2,Atl2-201,43293,Atl2-201;Atl2-208;Atl2-202;Atl2-203;Atl2-205;Atl2-207;Atl2-204,Atl2;Atl2;Atl2;Atl2;Atl2;Atl2;Atl2,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,7,56298,ENSMUSG00000059811,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19213,cg22956015,-0.000007,0.0000016,-4.382208603,0.0000161,loss,ns,0.000000256,0.00000271,0.094503926,0.924769918,pos,ns,-0.000174367,0.000795118,-0.219296726,0.826563232,neg,ns,0.082723917,-0.0000174,0.0000273,-0.63599748,0.525247321,neg,ns,0.068862134,Msl1,Msl1_Exon,11,98796474,98796523,98796474,98796475,50,+,CGGGAGCCTCCAGTCAGGCCGCCTGCCTCAAACAGATCCTTCTGCTGCAA,Promoter (<=1kb),11,98795516,98807859,12344,1,Msl1-201,958,Msl1-201;Msl1-203;Msl1-204;Msl1-202;Msl1-205,Msl1;Msl1;Msl1;Msl1;Msl1,0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,11,13,74026,ENSMUSG00000052915,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
17119,cg09855500,0.000003,0.00000334,0.895975173,0.370961227,gain,ns,-0.000000537,0.00000568,-0.094496572,0.924775754,neg,ns,0.004616743,0.001663812,2.774798518,0.005858846,pos,ns,2.232187947,-0.0000211,0.0000572,-0.368957246,0.712411457,neg,ns,0.937619124,Msi2,Msi2_Intron,11,88489223,88489272,88489223,88489224,50,-,CGAACCAGGGAAGGGTTTATAATTACCAAGTGTGAAAATGCACAGCCTGT,"Intron (Msi2-203/Msi2, intron 6 of 13)",11,88339382,88718229,378848,2,Msi2-203,228957,Msi2-203;Msi2-201;Msi2-207;Msi2-205,Msi2;Msi2;Msi2;Msi2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,21,36,76626,ENSMUSG00000069769,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6423,cg02095204,0.0000155,0.00000566,2.733151995,0.006633335,gain,ns,-0.000000909,0.00000962,-0.094476133,0.924791977,neg,ns,0.001216226,0.002818587,0.431502136,0.66640323,pos,ns,0.176262906,-0.0000323,0.0000969,-0.333152205,0.739244599,neg,ns,0.888804594,Stxbp5l,Stxbp5l_Exon,16,37186671,37186720,37186671,37186672,50,+,CGTTTCGTTAAATCAGGATAAAAGTTAGACAGGCCACGCATGCAAAAGTT,"Exon (Stxbp5l-206/Stxbp5l, exon 20 of 28)",16,37114942,37384923,269982,2,Stxbp5l-206,198203,Stxbp5l-206;Stxbp5l-205;Stxbp5l-204;Stxbp5l-203;Stxbp5l-201;Stxbp5l-209,Stxbp5l;Stxbp5l;Stxbp5l;Stxbp5l;Stxbp5l;Stxbp5l,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,207227,ENSMUSG00000022829,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7540,cg09336062,-0.00000544,0.0000032,-1.698737079,0.090372042,loss,ns,-0.000000514,0.00000544,-0.094459573,0.92480512,neg,ns,-0.000748239,0.001593637,-0.469516726,0.639030403,neg,ns,0.194478479,0.0000467,0.0000548,0.851244953,0.395290359,pos,ns,0.937249016,Phactr1,Phactr1_Exon,13,43077662,43077711,43077662,43077663,50,-,CGCCCCTGTGAAATTGCCTTGTCTGCCAGTGAAACTGTCGCCTCCGCTAC,"Exon (Phactr1-205/Phactr1, exon 7 of 14)",13,42680623,43138524,457902,1,Phactr1-205,397039,Phactr1-205;Phactr1-214;Phactr1-202;Phactr1-201;Phactr1-213;Phactr1-206;Phactr1-217,Phactr1;Phactr1;Phactr1;Phactr1;Phactr1;Phactr1;Phactr1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,218194,ENSMUSG00000054728,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7646,cg05409322,0.000002,0.00000739,0.270711236,0.786793287,gain,ns,0.00000119,0.0000126,0.09442107,0.924835679,pos,ns,-0.009439252,0.003678372,-2.566149662,0.010753078,neg,ns,1.968467216,0.000212436,0.000126499,1.679349291,0.094091523,pos,ns,0.719518859,Gm5364,Gm5364_Intergenic_upstream,9,43549304,43549353,43549352,43549353,50,+,CCCTCTATAATGACTTAATCTTGCCGACAGGGTGACAAGCGGATGAATCG,Distal Intergenic,9,43683053,43683941,889,1,Gm5364-201,-133700,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,4,384931,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2070,cg05037737,0.00000373,0.00000286,1.30588354,0.192560371,gain,ns,0.000000458,0.00000485,0.094380368,0.924867984,pos,ns,-0.002676024,0.001421075,-1.883098752,0.060623093,neg,ns,1.21736191,0.0000519,0.0000489,1.062973334,0.28862138,pos,ns,0.925509617,Spaca6,Spaca6_Exon,17,17830393,17830442,17830441,17830442,50,-,GGACACCCAAGGAGATCACTATACGGCCTCCTAGCTTTCCCCAGGCTGCG,"Exon (Mirlet7e-201/Mirlet7e-201, exon 1 of 1)",17,17827158,17839071,11914,1,Spaca6-215,3235,Spaca6-215;Spaca6-216;Spaca6-203;Spaca6-212;Spaca6-209;Spaca6-205;Spaca6-201;Spaca6-210;Spaca6-206;Spaca6-204;Spaca6-211,Spaca6;Spaca6;Spaca6;Spaca6;Spaca6;Spaca6;Spaca6;Spaca6;Spaca6;Spaca6;Spaca6,0;0;0;-451;-562;-622;-738;-738;-1002;-1593;-2510,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,75202,ENSMUSG00000080316,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17757,cg09525637,0.000130701,0.0000133,9.795993107,6.47E-20,gain,yes,-0.00000214,0.0000227,-0.094377982,0.924869878,neg,ns,0.026681563,0.006640605,4.017941525,0.0000737,pos,ns,4.132275185,-0.000194869,0.00022837,-0.853302632,0.394150334,neg,ns,0.852256103,Fto,Fto_Intron,8,91631677,91631726,91631725,91631726,50,+,CGGCTGATAGTTATTTGACCTCCCTTTGTGCATGGCTGTGGAGTGCTTCG,"Intron (Fto-201/Fto, intron 8 of 8)",8,91313525,91668439,354915,1,Fto-201,318152,Fto-201;Fto-205,Fto;Fto,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,26,26383,ENSMUSG00000055932,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8648,cg06860230,-0.0000193,0.00000494,-3.914015658,0.000111633,loss,ns,-0.000000792,0.00000839,-0.094350263,0.924891878,neg,ns,-0.001883083,0.002458102,-0.766071975,0.444216395,neg,ns,0.352405417,0.000142583,0.0000845,1.686695879,0.092667846,pos,ns,0.927422409,Btrc,Btrc_Intron,19,45476478,45476527,45476478,45476479,50,+,CGCCATCAGCACGTTTTGCGGAGTGCAGTATGGTGCAGTCTTTTAGTGCA,"Intron (Btrc-204/Btrc, intron 1 of 2)",19,45363734,45507736,144003,1,Btrc-204,112744,Btrc-204;Btrc-201;Btrc-210;Btrc-202;Btrc-203;Btrc-209,Btrc;Btrc;Btrc;Btrc;Btrc;Btrc,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,63,98,12234,ENSMUSG00000025217,conserved gene and region,19,45476406,45476490,85,*,85,8,0.623529412,1.011904762,0.094117647,0.00000348,CpGisland,TRUE,NA,NRS
10370,cg13623216,0.0000932,0.00000983,9.478172617,7.00E-19,gain,yes,-0.00000158,0.0000167,-0.094311842,0.924922372,neg,ns,0.005687419,0.004893658,1.162201859,0.246047443,pos,ns,0.608981143,-0.000175422,0.000168292,-1.042363709,0.29805529,neg,ns,0.099028421,Npas3,Npas3_fiveUTR,12,53253040,53253089,53253088,53253089,50,+,AGGAAGATGGCGCCCACCAAGCCCAGCTTTCAGCAGGATCCTTCCAGGCG,Promoter (<=1kb),12,53253046,54069074,816029,1,Npas3-203,0,Npas3-204;Npas3-201;Npas3-202;Npas3-203,Npas3;Npas3;Npas3;Npas3,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,103,27386,ENSMUSG00000021010,conserved gene but different region,12,53253050,53253346,297,*,297,40,0.747474748,0.967032967,0.134680135,1.92E-36,CpGisland,TRUE,NA,NRS
5415,cg18921175,-0.000015,0.00000624,-2.399082442,0.017026484,loss,ns,0.000000999,0.0000106,0.094251381,0.924970359,pos,ns,-0.000733477,0.00310577,-0.236165892,0.813459905,neg,ns,0.089663848,-0.000128262,0.000106807,-1.200873243,0.230717131,neg,ns,0.891083891,Ccdc39,Ccdc39_Intron,3,33882859,33882908,33882859,33882860,50,+,CGCTGACTCTAGCTGTCACAGCCCTGCCTTGGCTAAATCCAGTGGAGAGA,"Intron (4930431L21Rik-202/4930431L21Rik-202, intron 1 of 2)",3,33837994,33844310,6317,2,Ccdc39-202,-38549,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,5,51938,ENSMUSG00000027676,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17764,cg06699148,9.42E-08,0.000000268,0.350814985,0.725965433,gain,ns,0.000000043,0.000000456,0.094205285,0.925006946,pos,ns,-0.000305511,0.000133632,-2.286205782,0.022916521,neg,ns,1.639851317,0.00000829,0.0000046,1.803813632,0.072231201,pos,ns,0.993050876,Son,Son_Exon,16,91656381,91656430,91656381,91656382,50,-,CGACGACAGCGCTGGAATCCTATAATACGGTAGCACAGGAGCTGCCTACT,"Exon (Son-203/Son, exon 3 of 12)",16,91647506,91679207,31702,1,Son-203,8875,Son-203;Son-204;Son-202;Son-208;Son-201;Son-205;Son-212,Son;Son;Son;Son;Son;Son;Son,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,31,20658,ENSMUSG00000022961,conserved gene and region,16,91656231,91656409,179,*,179,11,0.603351955,0.686780607,0.061452514,0.00000161,CpGisland,TRUE,U10,Tr-S
15605,cg16097670,0.00000451,0.00000248,1.81496136,0.070496146,gain,ns,0.000000397,0.00000422,0.094133288,0.92506409,pos,ns,0.003040848,0.001235489,2.46125092,0.01438985,pos,ns,1.84194372,-0.0000913,0.0000425,-2.14796119,0.032491597,neg,ns,0.090781622,Irs1,Irs1_Exon,1,82290228,82290277,82290228,82290229,50,-,CGGGTGTAGAGAGCCACCAGGTGCTTGTTCTTGGAGTCAGCCCGCTTGTT,"Exon (Irs1-201/Irs1, exon 1 of 2)",1,82233101,82291416,58316,2,Irs1-201,1139,Irs1-201,Irs1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,16367,ENSMUSG00000055980,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
1503,cg26864094,-0.000000536,0.00000112,-0.480044297,0.631534433,loss,ns,0.000000178,0.0000019,0.094079798,0.925106545,pos,ns,0.001070202,0.000555716,1.92580711,0.055042838,pos,ns,1.259299179,-0.0000333,0.0000191,-1.741187379,0.082642795,neg,ns,0.965408362,Ddx3x,Ddx3x_threeUTR,X,13292553,13292602,13292553,13292554,50,+,CGATTCACATTACTCTGTTCAAGCTGCGTTGAGATGTTAAACTGGCTTAC,3' UTR,20,13280970,13294052,13083,1,Ddx3x-201,11583,Ddx3x-201;Ddx3x-205;Ddx3x-204;Ddx3x-202;Ddx3x-203,Ddx3x;Ddx3x;Ddx3x;Ddx3x;Ddx3x,0;0;0;0;4768,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,6,13205,ENSMUSG00000000787,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
926,cg22300823,-0.000093,0.0000142,-6.55468162,2.33E-10,loss,yes,0.00000227,0.0000241,0.094051418,0.925129071,pos,ns,-0.01062,0.007060658,-1.504109069,0.133571383,neg,ns,0.874286578,0.000308202,0.000242815,1.269283469,0.20529208,pos,ns,0.75922351,Gata3,Gata3_Intron,2,9873022,9873071,9873022,9873023,50,-,CGTGCAGCAGTCTGAAAATAATTGGATTAGCTAAAACATATCAACTAAAT,"Intron (Gata3-201/Gata3, intron 3 of 5)",2,9857078,9878600,21523,2,Gata3-201,5529,Gata3-201;Gata3-205;Gata3-206;Gata3-202;Gata3-204;Gata3-203,Gata3;Gata3;Gata3;Gata3;Gata3;Gata3,0;0;2328;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,21,14462,ENSMUSG00000015619,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24755,cg10289385,-0.00000136,0.00000255,-0.534582806,0.59332157,loss,ns,0.000000407,0.00000433,0.094039615,0.925138439,pos,ns,0.000250562,0.001268079,0.197591449,0.843494223,pos,ns,0.073917888,0.00000609,0.0000436,0.139738811,0.888957104,pos,ns,0.947032123,Pan2,Pan2_Exon,10,128315547,128315596,128315595,128315596,50,-,GTCTATGTGTATGACCTGATGGCTACTGTGGTACACATCCTGGACTCACG,"Exon (Pan2-201/Pan2, exon 18 of 26)",10,128303335,128321353,18019,1,Pan2-201,12212,Pan2-201;Pan2-204;Pan2-203;Pan2-206;Pan2-205,Pan2;Pan2;Pan2;Pan2;Pan2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,4,103135,ENSMUSG00000005682,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22159,cg07306283,0.000000426,0.00000121,0.352360241,0.724807545,gain,ns,-0.000000193,0.00000205,-0.094000472,0.925169508,neg,ns,-0.001104171,0.000601903,-1.83446838,0.067542749,neg,ns,1.17042127,0.0000281,0.0000207,1.358433447,0.175313891,pos,ns,0.978601867,Wdr59,Wdr59_Exon,8,111472590,111472639,111472638,111472639,50,+,CAGGATTAGTTAAGGAGAGCATTTGCACAGCGCACAGTACCGGGAAGTCG,"Exon (Wdr59-201/Wdr59, exon 19 of 27)",8,111448797,111522092,73296,2,Wdr59-202,49453,Wdr59-202;Wdr59-201;Wdr59-203,Wdr59;Wdr59;Wdr59,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,319481,ENSMUSG00000031959,conserved gene and region,8,111472620,111472701,82,*,82,9,0.56097561,1.438596491,0.109756098,0.000000162,CpGisland,TRUE,U11,Tr-P
26702,cg04661107,0.000000687,0.000005,0.13758247,0.890659728,gain,ns,-0.000000798,0.00000849,-0.093980416,0.925185427,neg,ns,0.003836426,0.002486963,1.542614696,0.123944448,pos,ns,0.906772922,-0.000189209,0.0000855,-2.212284723,0.027675709,neg,ns,0.780081576,Nsfl1c,Nsfl1c_Exon,2,151503141,151503190,151503141,151503142,50,+,CGAGTGACCAAGAGCCCTGGAGAGACCAGTAAACCGAGAGTGAGTATAAG,"Exon (Nsfl1c-202/Nsfl1c, exon 5 of 10)",2,151494182,151511310,17129,1,Nsfl1c-202,8959,Nsfl1c-202;Nsfl1c-209;Nsfl1c-204;Nsfl1c-201;Nsfl1c-203;Nsfl1c-205;Nsfl1c-210;Nsfl1c-208;Nsfl1c-206,Nsfl1c;Nsfl1c;Nsfl1c;Nsfl1c;Nsfl1c;Nsfl1c;Nsfl1c;Nsfl1c;Nsfl1c,0;0;8851;0;0;0;0;0;-547,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,386649,ENSMUSG00000027455,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9640,cg15685440,-0.00000448,0.000012,-0.371804232,0.710292623,loss,ns,0.00000192,0.0000205,0.093958261,0.925203011,pos,ns,0.026859684,0.005993349,4.481582194,0.0000104,pos,ns,4.981385916,-0.000819438,0.000206111,-3.975714688,0.0000874,neg,ns,0.290130944,Dbx1,Dbx1_Promoter,7,49640657,49640706,49640657,49640658,50,+,CGTTTGTTTTGCTCTTACAAAATAGCCCCCAAAACAGCTGGCAAGGGTGA,Promoter (3-4kb),7,49631499,49636849,5351,2,Dbx1-201,-3808,Dbx1-201,Dbx1,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,8,18,13172,ENSMUSG00000030507,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
27740,cg18772588,0.0000224,0.0000033,6.779724136,6.09E-11,gain,yes,0.000000527,0.00000561,0.09393918,0.925218156,pos,ns,0.002442816,0.00164307,1.486739323,0.138100018,pos,ns,0.859806264,-0.0000835,0.0000565,-1.47804255,0.140411667,neg,ns,0.057398778,Ythdf1,Ythdf1_Exon,2,180894063,180894112,180894111,180894112,50,-,TGATTTAATGTCTATACAATTAAGGCACGCGGTGAATGCCAAGAGAGGCG,"Exon (Mir124a-3-201/Mir124a-3-201, exon 1 of 1)",2,180911768,180920387,8620,2,Ythdf1-203,26324,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,228994,ENSMUSG00000038848,mapped to different genes,2,180892700,180894599,1900,*,1900,214,0.697368421,0.934712644,0.112631579,1.61E-173,CpGisland,TRUE,U3,Pr-B
22272,cg12686535,0.0000422,0.0000103,4.110351192,0.0000506,gain,ns,-0.00000164,0.0000175,-0.093759402,0.92536085,neg,ns,0.024211907,0.005115794,4.732776371,0.00000337,pos,ns,5.472102865,-0.000543507,0.000175932,-3.089307278,0.002187984,neg,ns,0.299580812,Tead1,Tead1_Intron,7,112812310,112812359,112812358,112812359,50,+,TTGACTTTTCATTTACACATCCTGCCAATTGCTAACAAGTTTCCATCTCG,"Intron (Tead1-203/Tead1, intron 2 of 11)",7,112679318,112899459,220142,1,Tead1-203,132992,Tead1-203;Tead1-216;Tead1-217;Tead1-201;Tead1-204;Tead1-214;Tead1-206;Tead1-202;Tead1-211;Tead1-207;Tead1-210;Tead1-212;Tead1-208;Tead1-209,Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,16,21676,ENSMUSG00000055320,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27821,cg04964266,0.0000021,0.00000574,0.365395391,0.715065465,gain,ns,0.000000915,0.00000976,0.093753761,0.925365328,pos,ns,0.00405568,0.002858588,1.418770356,0.15697057,pos,ns,0.804181765,-0.000143702,0.0000983,-1.461771305,0.144816823,neg,ns,0.87699915,Esrrg,Esrrg_Intron,1,188151192,188151241,188151240,188151241,50,+,ACCAATTTATTGGTCATGATACGCCAGCTATGTTGCTAACAGTCGTAACG,"Intron (Esrrg-203/Esrrg, intron 6 of 7)",1,187609029,188214386,605358,1,Esrrg-203,542163,Esrrg-203;Esrrg-201;Esrrg-202,Esrrg;Esrrg;Esrrg,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,60,26381,ENSMUSG00000026610,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1424,cg05928030,-0.0000384,0.0000141,-2.713620194,0.007027484,loss,ns,-0.00000225,0.000024,-0.093715491,0.925395704,neg,ns,-0.00119654,0.007041839,-0.169918686,0.865184919,neg,ns,0.062891059,-0.000344754,0.000242168,-1.423613018,0.155564212,neg,ns,0.782918009,Sulf1,Sulf1_Exon,1,12805218,12805267,12805266,12805267,50,+,TACATCCCCCCTGGGTGGCGAGAATGGCTTGGATTAATCAAGAATTCTCG,"Exon (Sulf1-202/Sulf1, exon 6 of 22)",1,12692277,12861192,168916,1,Sulf1-202,112941,Sulf1-202;Sulf1-203;Sulf1-205;Sulf1-208;Sulf1-201,Sulf1;Sulf1;Sulf1;Sulf1;Sulf1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,5,240725,ENSMUSG00000016918,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6857,cg17318899,0.000012,0.0000118,1.015710284,0.310559438,gain,ns,-0.00000188,0.0000201,-0.093679058,0.925424623,neg,ns,-0.008025662,0.005891573,-1.362227353,0.174115087,neg,ns,0.759163595,0.00015757,0.000202611,0.777699338,0.437339389,pos,ns,0.196059558,Nr6a1,Nr6a1_Intron,2,38825210,38825259,38825210,38825211,50,-,CGATTCGAAAAGTCCATTCATATATCTCGCTACCTGGATTTGAATAGAAA,"Intron (Nr6a1os-201/Nr6a1os-201, intron 1 of 1)",2,38723370,38927688,204319,2,Nr6a1-202,102429,Nr6a1-202;Nr6a1-201;Nr6a1-208,Nr6a1;Nr6a1;Nr6a1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,12,14536,ENSMUSG00000063972,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11751,cg25999777,-0.0000411,0.0000079,-5.202936451,0.000000357,loss,yes,0.00000126,0.0000134,0.093663036,0.92543734,pos,ns,-0.010729141,0.003929692,-2.73027506,0.006690108,neg,ns,2.174566846,0.00000252,0.000135142,0.018681191,0.985107451,pos,ns,0.831246041,Abi2,Abi2_Exon,1,60447272,60447321,60447320,60447321,50,+,CTATCGCACACTGGAGCCAGTGCGTCCTCCAGTGGTACCAAATGATTACG,"Exon (Abi2-201/Abi2, exon 5 of 9)",1,60409619,60481158,71540,1,Abi2-201,37653,Abi2-201;Abi2-206;Abi2-207;Abi2-210;Abi2-212;Abi2-208;Abi2-205;Abi2-202;Abi2-204;Abi2-203;Abi2-211,Abi2;Abi2;Abi2;Abi2;Abi2;Abi2;Abi2;Abi2;Abi2;Abi2;Abi2,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,9,329165,ENSMUSG00000026782,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24995,cg10668448,0.0000195,0.0000066,2.959649468,0.00331733,gain,ns,-0.00000105,0.0000112,-0.093623792,0.92546849,neg,ns,0.001347159,0.003283378,0.410296693,0.681871737,pos,ns,0.16629731,-0.000107933,0.000112915,-0.955877681,0.33987885,neg,ns,0.601312284,Lef1,Lef1_Exon,3,131191001,131191050,131191049,131191050,50,+,TTCCTTTCTTCTGTGACCTCAGGCAAGGTCAGCCTGTATATCCCATCACG,"Exon (Lef1-201/Lef1, exon 6 of 12)",3,131110471,131224356,113886,1,Lef1-201,80530,Lef1-201;Lef1-202;Lef1-204;Lef1-203;Lef1-205;Lef1-207,Lef1;Lef1;Lef1;Lef1;Lef1;Lef1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,9,16842,ENSMUSG00000027985,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8281,cg11415699,-0.0000068,0.0000079,-0.860267703,0.390306307,loss,ns,0.00000126,0.0000134,0.093598359,0.925488677,pos,ns,0.006162536,0.003932069,1.567250117,0.118076404,pos,ns,0.927836881,-0.000396524,0.000135224,-2.932356378,0.003614522,neg,ns,0.838354537,Ebf1,Ebf1_Intron,11,44941914,44941963,44941914,44941915,50,-,CGGAATTCCCAGTTTAAAGTAATCACAAAATTTATGGAGAAGCGGATAAA,"Intron (Ebf1-203/Ebf1, intron 10 of 15)",11,44617317,45004995,387679,1,Ebf1-203,324597,Ebf1-203;Ebf1-202;Ebf1-201;Ebf1-206,Ebf1;Ebf1;Ebf1;Ebf1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,80,13591,ENSMUSG00000057098,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2142,cg05256399,-0.00001,0.00000789,-1.270503551,0.204857988,loss,ns,-0.00000125,0.0000134,-0.093588257,0.925496695,neg,ns,-0.006163463,0.003927019,-1.569501749,0.117551186,neg,ns,0.929772985,-0.0000148,0.00013505,-0.109942448,0.912526155,neg,ns,0.825483962,Gm12017,Gm12017_Intergenic_upstream,11,18069460,18069509,18069460,18069461,50,+,CGTGATACCCGCTGCTTTGTTTATGGATTTGATGCTATTCATATAGTCTT,Distal Intergenic,11,17973788,17974790,1003,2,Gm12017-201,-94670,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,3,327871,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18581,cg10153335,0.00000833,0.00000419,1.987198355,0.047780219,gain,ns,-0.000000666,0.00000712,-0.093547241,0.925529252,neg,ns,-0.005890182,0.002086167,-2.823447457,0.005058456,neg,ns,2.295982029,0.000172216,0.0000717,2.400451238,0.016964128,pos,ns,0.068764506,Hoxb5,Hoxb5_Exon,11,96303365,96303414,96303365,96303366,50,+,CGTCATTATTTGTAACCATAGAGCATGAATTACCTCTTGAGGTCATCAGC,Promoter (<=1kb),11,96303336,96306121,2786,1,Hoxb5-202,29,Hoxb5-202;Hoxb5-201;Hoxb6-202;Hoxb6-201,Hoxb5;Hoxb5;Hoxb6;Hoxb6,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,22,34,15413,ENSMUSG00000038700,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
15671,cg05013596,0.0000205,0.00000949,2.162492872,0.031344706,gain,ns,0.00000151,0.0000161,0.093524281,0.925547476,pos,ns,-0.004785983,0.00472368,-1.013189351,0.311759859,neg,ns,0.506179804,0.000202596,0.000162447,1.247151431,0.21328337,pos,ns,0.81093624,Col4a3,Col4a3_Exon,1,82716095,82716144,82716095,82716096,50,-,CGAAATGATTATTCATACTGGCTGTCAACACCAGCTCTGATGCCAATGAA,"Exon (Col4a3-201/Col4a3, exon 49 of 52)",1,82586976,82722059,135084,1,Col4a3-201,129119,Col4a3-201;Col4a3-202;Col4a3-204,Col4a3;Col4a3;Col4a3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,12828,ENSMUSG00000079465,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2418,cg06789893,-0.0000357,0.0000113,-3.163882947,0.0017112,loss,ns,-0.00000179,0.0000192,-0.093515396,0.925554529,neg,ns,-0.012670025,0.005610456,-2.258287973,0.024622688,neg,ns,1.60866453,0.0000114,0.000192943,0.059327092,0.952729808,pos,ns,0.50747978,Gm12025,Gm12025_Intergenic_downstream,11,19350609,19350658,19350657,19350658,50,-,ACTTCTGAGACATTAAAAGAATTTTCTGTGATTAATGTGACCCACACACG,Distal Intergenic,11,19360926,19361069,144,2,Gm12025-201,10460,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,4,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9646,cg01751715,0.0000236,0.0000109,2.1698566,0.030776977,gain,ns,0.00000173,0.0000185,0.093438493,0.925615571,pos,ns,0.005086097,0.005416256,0.939042841,0.348439823,pos,ns,0.457872215,-0.000179877,0.000186265,-0.965709057,0.33494254,neg,ns,0.193227722,Dbx1,Dbx1_Intergenic_upstream,7,49678275,49678324,49678323,49678324,50,+,ATTTGTAACAGTGACCAGAACAGACCGCATTACACTCTCCAAATGGTGCG,Distal Intergenic,7,49631499,49636849,5351,2,Dbx1-201,-41426,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,18,13172,ENSMUSG00000030507,conserved gene and region,7,49678151,49678426,276,*,276,14,0.452898551,1.007824726,0.050724638,0.000000385,CpGisland,TRUE,U13,Hc-P
15980,cg00797540,-0.0000226,0.00000905,-2.502862793,0.0128337,loss,ns,0.00000144,0.0000154,0.093419044,0.925631009,pos,ns,0.005730156,0.004502926,1.272540557,0.204134738,pos,ns,0.690083084,-0.000278003,0.000154855,-1.795247062,0.073588266,neg,ns,0.801116899,Tshz1,Tshz1_Intron,18,84082615,84082664,84082663,84082664,50,-,TTAATGAAGCTGGCTAAACAACCTTACCTTTTTTGATAATTAAGAAGCCG,"Intron (Tshz1-201/Tshz1, intron 1 of 1)",18,84011627,84086404,74778,2,Tshz1-201,3740,Tshz1-201;Tshz1-202;Tshz1-203;Tshz1-204,Tshz1;Tshz1;Tshz1;Tshz1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,18,110796,ENSMUSG00000046982,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1654,cg22834563,0.0000272,0.00000981,2.769998344,0.005943735,gain,ns,0.00000155,0.0000167,0.093240129,0.925773026,pos,ns,-0.001535937,0.004883324,-0.314526868,0.753332493,neg,ns,0.1230133,0.0000386,0.000167937,0.229744134,0.818442113,pos,ns,0.686311381,Zfp521,Zfp521_Intergenic_upstream,18,14064097,14064146,14064097,14064098,50,+,CGCATGATTAGCCAAGATGAAGGGACCAGCTGCAAACTTTAATTTCCTGA,Distal Intergenic,18,13687013,13972787,285775,2,Zfp521-201,-91310,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,81,225207,ENSMUSG00000024420,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15301,cg09811006,0.000251464,0.0000157,16.01130861,1.81E-42,gain,yes,0.00000249,0.0000267,0.093216122,0.925792082,pos,ns,-0.02562024,0.007816739,-3.277612147,0.001165771,neg,ns,2.933386761,0.000606195,0.000268817,2.255046243,0.024827796,pos,ns,0.453781775,Actn1,Actn1_Intron,12,80258821,80258870,80258869,80258870,50,-,TGTTACCATTTTTGGACATGAGCGTTCTCCCTCAAGCCCAGCCCTAACCG,"Intron (Actn1-201/Actn1, intron 1 of 20)",12,80167547,80260371,92825,2,Actn1-201,1501,Actn1-201;Actn1-202;Actn1-204;Actn1-207,Actn1;Actn1;Actn1;Actn1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,10,109711,ENSMUSG00000015143,conserved gene and region,12,80258869,80259021,153,*,153,10,0.666666667,0.593944099,0.065359477,0.00000333,CpGisland,TRUE,NA,NRS
24903,cg07354656,-0.000000229,0.000000336,-0.680291217,0.496827825,loss,ns,5.32E-08,0.000000571,0.093209592,0.925797265,pos,ns,0.000358951,0.00016737,2.144663584,0.032756827,pos,ns,1.484698172,-0.0000129,0.00000576,-2.245955653,0.025410917,neg,ns,0.00829921,Zbtb8a,Zbtb8a_fiveUTR,4,129377919,129377968,129377919,129377920,50,-,CGCCCGAGGGCTGGGGACACAATTAAAGGGGCAACGCACAGATTTCAGGC,Promoter (<=1kb),4,129353628,129378116,24489,2,Zbtb8a-201,148,Gm12980-201;Zbtb8a-201,Gm12980;Zbtb8a,-1876;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,5,73680,ENSMUSG00000028807,conserved gene but different region,4,129377047,129378041,995,*,995,129,0.712562814,1.024152624,0.129648241,6.09E-114,CpGisland,TRUE,NA,NRS
26190,cg06837923,-0.00000383,0.00000543,-0.706053574,0.480685092,loss,ns,0.000000859,0.00000922,0.093160902,0.925835914,pos,ns,-0.004791477,0.002702552,-1.77294524,0.077219684,neg,ns,1.112271981,0.0000474,0.0000929,0.510344532,0.610173298,pos,ns,0.877865562,Gm5857,Gm5857_Intergenic_downstream,3,144327575,144327624,144327575,144327576,50,+,CGTTGCTGATGAGGACCTTGAGCCAAATGAAAAGTGTTCATTTGTCAGCA,Distal Intergenic,3,144427180,144427672,493,2,Gm5857-201,100048,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,9,545572,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10941,cg08034977,-0.00000516,0.00000213,-2.426505371,0.015815016,loss,ns,0.000000337,0.00000362,0.093102582,0.925882207,pos,ns,-0.000482346,0.001059335,-0.45532895,0.649191344,neg,ns,0.18762728,0.00000994,0.0000364,0.272841953,0.78515637,pos,ns,0.9453708,Tcf7l2,Tcf7l2_Intron,19,55894482,55894531,55894482,55894483,50,+,CGGCCAAAGCATCAGAGCTGCGCAAGGTGGCAAGATAATTTGTGCTGGTT,"Intron (Tcf7l2-213/Tcf7l2, intron 4 of 13)",19,55741820,55933229,191410,1,Tcf7l2-213,152662,Tcf7l2-213;Tcf7l2-201;Tcf7l2-208;Tcf7l2-211;Tcf7l2-212;Tcf7l2-206;Tcf7l2-204;Tcf7l2-205;Tcf7l2-222;Tcf7l2-215;Tcf7l2-214;Tcf7l2-207;Tcf7l2-202;Tcf7l2-209;Tcf7l2-210;Tcf7l2-217;Tcf7l2-220;Tcf7l2-218;Tcf7l2-203;Tcf7l2-216;Tcf7l2-219;Tcf7l2-221,Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,55,88,21416,ENSMUSG00000024985,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10322,cg16908172,-0.0000297,0.0000108,-2.745167875,0.006400892,loss,ns,0.00000171,0.0000184,0.093102278,0.925882448,pos,ns,-0.008105099,0.005381864,-1.506002272,0.133084847,neg,ns,0.875871389,0.0000103,0.000185082,0.055822564,0.95551912,pos,ns,0.624112047,Akap6,Akap6_Exon,12,53025751,53025800,53025799,53025800,50,+,GCTCTGGGATTGGCTGATTGACATGGAGTCCCTTGTGATGGACAGCCACG,"Exon (Akap6-201/Akap6, exon 9 of 14)",12,52699383,53155599,456217,1,Akap6-201,326368,Akap6-201;Akap6-202,Akap6;Akap6,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,13,238161,ENSMUSG00000061603,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9062,cg26811401,0.00000257,0.0000116,0.222165869,0.824331055,gain,ns,0.00000183,0.0000197,0.093069864,0.925908178,pos,ns,0.002213922,0.005758902,0.384434785,0.700919803,pos,ns,0.15433167,0.000144875,0.000198048,0.731515323,0.465017046,pos,ns,0.502104884,Gm8863,Gm8863_Intergenic_upstream,9,46751221,46751270,46751269,46751270,50,+,AGTCCGATCAGCAAACAGATTAGTTTTAAGTGAAAAGACACTGGCAGACG,Distal Intergenic,9,46713233,46714158,926,2,Gm8863-201,-37063,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,20,667890,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26380,cg18184892,0.000000608,0.00000107,0.570160137,0.568982076,gain,ns,-0.000000168,0.00000181,-0.093004129,0.925960357,neg,ns,-0.000016,0.000530387,-0.030240548,0.97589467,neg,ns,0.010597054,-0.0000149,0.0000182,-0.815058573,0.415664516,neg,ns,0.02998829,Gsx1,Gsx1_Promoter,5,147186521,147186570,147186569,147186570,50,-,TCCTATTACTTAATTCAATCATAGCGAAGAGACTTGGTAAAAAGCCCACG,Promoter (2-3kb),5,147188696,147190947,2252,1,Gsx1-201,-2175,Gsx1-201,Gsx1,-2126,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,6,20,14842,ENSMUSG00000053129,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
3749,cg12738294,0.0000009,0.00000284,0.316391028,0.751918662,gain,ns,-0.000000449,0.00000483,-0.092967393,0.925989518,neg,ns,-0.001825695,0.001415441,-1.289841565,0.198067069,neg,ns,0.703187724,0.0000725,0.0000487,1.490069474,0.137222691,pos,ns,0.805128466,Baiap3,Baiap3_Exon,17,25252071,25252120,25252071,25252072,50,-,CGGAAGGACGGGCACACCTGCACCTGCCTGAGCACGCTGCTCTTAATGTC,"Exon (Baiap3-202/Baiap3, exon 2 of 34)",17,25242659,25256364,13706,2,Baiap3-202,4244,Baiap3-202;Baiap3-206;Baiap3-204;Baiap3-201;Baiap3-207;Baiap3-209,Baiap3;Baiap3;Baiap3;Baiap3;Baiap3;Baiap3,0;0;0;0;-3944;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,545192,ENSMUSG00000047507,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16533,cg05132365,-0.0000352,0.0000108,-3.250114114,0.001280404,loss,ns,-0.00000171,0.0000184,-0.092858637,0.926075848,neg,ns,-0.016249194,0.005383097,-3.018558654,0.002750625,neg,ns,2.560568661,0.000196896,0.000185124,1.063585816,0.288344149,pos,ns,0.876333263,Camkmt,Camkmt_Intron,17,85393215,85393264,85393215,85393216,50,+,CGGTGGTAATGTTGCAGTGAACACTAATGAGGGAACCCCCACTGATTTGC,"Intron (Camkmt-201/Camkmt, intron 4 of 10)",17,85090552,85458588,368037,1,Camkmt-201,302663,Camkmt-201,Camkmt,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,41,44,73582,ENSMUSG00000071037,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27658,cg25362948,-0.00000144,0.00000228,-0.631046874,0.528474858,loss,ns,0.00000036,0.00000388,0.092818983,0.926107326,pos,ns,0.0000656,0.001136226,0.057706863,0.954019305,pos,ns,0.020442837,0.0000297,0.0000391,0.759407163,0.448186102,pos,ns,0.951279118,Cep170,Cep170_threeUTR,1,176750064,176750113,176750064,176750065,50,-,CGTAGACGGGTATGTTTAGGGGAATTACGGTTTGATCCAAATTCATCTTC,3' UTR,1,176733653,176807124,73472,2,Cep170-201,57011,Cep170-201;Cep170-203;Cep170-215;Cep170-212;Cep170-211;Cep170-204;Cep170-214;Cep170-206;Cep170-213,Cep170;Cep170;Cep170;Cep170;Cep170;Cep170;Cep170;Cep170;Cep170,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,4,545389,ENSMUSG00000057335,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19242,cg25583823,-0.00000124,0.00000465,-0.26742968,0.789316183,loss,ns,-0.000000732,0.00000789,-0.092668926,0.926226443,neg,ns,0.000253763,0.002312807,0.109720692,0.912701883,pos,ns,0.039671054,-0.000142089,0.0000795,-1.786449783,0.075003613,neg,ns,0.847955392,Kmt2d,Kmt2d_threeUTR,15,98833823,98833872,98833871,98833872,50,-,AAATCCAACACTTAAATGAGGTAGGTGTGGGTGCGGGGTCTCCTTGCCCG,3' UTR,15,98831669,98871183,39515,2,Kmt2d-202,37311,Kmt2d-202;Kmt2d-201;Kmt2d-204;Prkag1-201;Prkag1-206;Prkag1-203;Prkag1-205,Kmt2d;Kmt2d;Kmt2d;Prkag1;Prkag1;Prkag1;Prkag1,0;0;0;-2302;-2852;-2369;-2335,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,16,381022,ENSMUSG00000048154,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4505,cg23452552,0.00000581,0.0000038,1.526967364,0.12778875,gain,ns,-0.000000598,0.00000646,-0.092480079,0.926376353,neg,ns,-0.003281755,0.001893034,-1.73359525,0.08398419,neg,ns,1.075802462,-0.00000804,0.0000651,-0.123458247,0.901824241,neg,ns,0.820207675,Dpf1,Dpf1_Exon,7,29316203,29316252,29316203,29316204,50,-,CGTGCCCCCAGGGTGCCAGCTGGGCGGGTCTCACCCCCCAGGACCAGCTG,"Exon (Dpf1-204/Dpf1, exon 11 of 12)",7,29303951,29317264,13314,1,Dpf1-204,12252,Dpf1-204;Dpf1-201;Dpf1-203;Dpf1-208;Dpf1-202;Dpf1-210;Dpf1-207;Dpf1-205;Dpf1-209;Dpf1-206;Dpf1-211;Sipa1l3-218;Sipa1l3-205;Sipa1l3-201;Sipa1l3-215,Dpf1;Dpf1;Dpf1;Dpf1;Dpf1;Dpf1;Dpf1;Dpf1;Dpf1;Dpf1;Dpf1;Sipa1l3;Sipa1l3;Sipa1l3;Sipa1l3,0;0;0;0;0;0;0;0;0;0;0;61353;38045;189208;189208,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,4,29861,ENSMUSG00000030584,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12574,cg09618013,-0.00000619,0.00000203,-3.054687834,0.002448533,loss,ns,-0.000000318,0.00000344,-0.092388716,0.92644888,neg,ns,0.000983708,0.001007871,0.976025332,0.329812927,pos,ns,0.481732327,-0.0000507,0.0000347,-1.462437412,0.144634422,neg,ns,0.951816041,Tjp1,Tjp1_Exon,7,65314764,65314813,65314812,65314813,50,-,AGAGGAGTCCTCTCTTACAGGCTCAGAGGACCGTGTAATGGCAGACTCCG,"Exon (Tjp1-202/Tjp1, exon 19 of 28)",7,65296165,65371239,75075,2,Tjp1-202,56426,Tjp1-202;Tjp1-201;Tjp1-207,Tjp1;Tjp1;Tjp1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,13,21872,ENSMUSG00000030516,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21052,cg13219590,0.0000123,0.00000332,3.717271265,0.000238909,gain,ns,0.00000052,0.00000564,0.092270286,0.926542895,pos,ns,0.005219126,0.001650917,3.161349205,0.001725682,pos,ns,2.763039236,-0.000128037,0.0000568,-2.255173876,0.024819692,neg,ns,0.086399485,Vrk1,Vrk1_Intergenic_downstream,12,106175304,106175353,106175352,106175353,50,+,CCTGCAATATGCTCTCGATCAATCAGATTTGCATAACTAAACTGTCTGCG,Distal Intergenic,12,106030717,106075409,44693,1,Vrk1-204,144587,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,29,37,22367,ENSMUSG00000021115,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
21335,cg15597107,0.0000228,0.00000307,7.405359813,1.25E-12,gain,yes,-0.000000481,0.00000522,-0.092194653,0.926602936,neg,ns,0.005123297,0.001529798,3.34900286,0.000911125,pos,ns,3.040421882,-0.0000605,0.0000526,-1.149556151,0.251212827,neg,ns,0.052152278,Cacna2d2,Cacna2d2_Intergenic_upstream,9,107378185,107378234,107378185,107378186,50,-,CGTATTGGTTTCTGCTCTATTAGAGGGGCAGGAGGGGGGAAATCAATGTT,Distal Intergenic,9,107399612,107529343,129732,1,Cacna2d2-205,-21427,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,18,56808,ENSMUSG00000010066,conserved gene and region,9,107377971,107378212,242,*,242,21,0.652892562,0.820736434,0.08677686,5.36E-15,CpGisland,TRUE,NA,NRS
21745,cg06239389,-0.000000209,0.00000356,-0.058797745,0.953151088,loss,ns,0.000000556,0.00000604,0.092023219,0.926739029,pos,ns,0.001103055,0.001770793,0.622915756,0.533797858,pos,ns,0.272623174,-0.000104333,0.0000609,-1.713265224,0.08766352,neg,ns,0.888780166,Zfhx3,Zfhx3_Exon,8,108956356,108956405,108956404,108956405,50,+,CTCTACGACCCCTTCATTGTTCCAAAGGTGCAGTACAAGTTGGTCTGCCG,"Exon (Zfhx3-204/Zfhx3, exon 16 of 16)",8,107942644,108961630,1018987,1,Zfhx3-204,1013712,Zfhx3-204;Zfhx3-201,Zfhx3;Zfhx3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,46,177,11906,ENSMUSG00000038872,conserved gene and region,8,108956404,108956473,70,*,70,8,0.7,0.942760943,0.114285714,0.000000774,CpGisland,TRUE,U10,Tr-S
5435,cg22154099,0.000000615,0.0000034,0.180929611,0.856541057,gain,ns,0.000000531,0.00000577,0.091968618,0.926782375,pos,ns,-0.0000118,0.0016918,-0.006982909,0.994432982,neg,ns,0.00242448,-0.000122279,0.0000582,-2.101698959,0.036386373,neg,ns,0.929706082,Mvb12b,Mvb12b_Intron,2,33941678,33941727,33941678,33941679,50,-,CGATGAGCTTTTAAATCTTGGTGGAAATCATAAATAATTGCACTAAGTAC,"Intron (Gm13403-201/Gm13403-201, intron 1 of 1)",2,33729953,33887946,157994,2,Mvb12b-201,-53781,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,28,47,72543,ENSMUSG00000038740,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9752,cg06214816,-0.0000306,0.00000913,-3.352921532,0.000898772,loss,ns,-0.00000142,0.0000155,-0.091758301,0.926949341,neg,ns,0.005277016,0.004544593,1.161163602,0.246468699,pos,ns,0.608238227,-0.000441849,0.000156288,-2.827145466,0.005001878,neg,ns,0.803250694,Trps1,Trps1_threeUTR,15,50659336,50659385,50659384,50659385,50,-,ATTAAAGTCAGTCCTTGTACATACATCCTTGTAGCAAGCATTGAGGCTCG,3' UTR,15,50654752,50889691,234940,2,Trps1-202,230306,Trps1-202;Trps1-206;Trps1-204;Trps1-205;Trps1-207;Trps1-201,Trps1;Trps1;Trps1;Trps1;Trps1;Trps1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,36,83925,ENSMUSG00000038679,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13779,cg14507657,-0.00000297,0.00000311,-0.955504377,0.340067204,loss,ns,-0.000000484,0.00000528,-0.091674132,0.927016161,neg,ns,0.001368197,0.001546876,0.884490534,0.377116956,pos,ns,0.42352394,-0.000091,0.0000532,-1.71038798,0.088194643,neg,ns,0.940650527,Eif1-ps3,Eif1-ps3_Intergenic_upstream,2,72598239,72598288,72598287,72598288,50,+,AATTAGACTAATTCCCTTCATCATGAATTATTTATTTCCATTGGTAACCG,Distal Intergenic,2,72570481,72570822,342,2,Eif1-ps3-201,-27417,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,383712,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10928,cg04148867,-0.0000109,0.000003,-3.622677059,0.000340569,loss,ns,-0.000000467,0.0000051,-0.091638571,0.927044393,neg,ns,0.000777933,0.001494291,0.520603572,0.603014586,pos,ns,0.219672183,-0.0000483,0.0000514,-0.940751591,0.34756465,neg,ns,0.919300444,Tcf7l2,Tcf7l2_Intron,19,55888923,55888972,55888971,55888972,50,+,AATGAATATTTTCTCATTGGTCTGTGTCCCTCGGCTAAGCTGTTGCCGCG,"Intron (Tcf7l2-213/Tcf7l2, intron 4 of 13)",19,55741820,55933229,191410,1,Tcf7l2-213,147103,Tcf7l2-213;Tcf7l2-201;Tcf7l2-208;Tcf7l2-211;Tcf7l2-212;Tcf7l2-206;Tcf7l2-204;Tcf7l2-205;Tcf7l2-222;Tcf7l2-215;Tcf7l2-214;Tcf7l2-207;Tcf7l2-202;Tcf7l2-209;Tcf7l2-210;Tcf7l2-217;Tcf7l2-220,Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,55,88,21416,ENSMUSG00000024985,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26504,cg16698315,-0.00000152,0.00000112,-1.359053769,0.175117459,loss,ns,0.000000174,0.0000019,0.091592744,0.927080774,pos,ns,0.000612134,0.000556842,1.099295192,0.27249231,pos,ns,0.56464575,-0.000025,0.0000191,-1.305287248,0.192763015,neg,ns,0.970919399,Adgrl2,Adgrl2_Exon,3,148835255,148835304,148835303,148835304,50,-,TAAAAAATTATTCACTTGAAAAACACTCAGGTCGCTTGCAATTACTTACG,"Exon (Adgrl2-202/Adgrl2, exon 14 of 23)",3,148815586,148954635,139050,2,Adgrl2-202,119331,Adgrl2-202;Adgrl2-208;Adgrl2-205;Adgrl2-217;Adgrl2-220;Adgrl2-215;Adgrl2-204;Adgrl2-212;Adgrl2-213;Adgrl2-214;Adgrl2-206;Adgrl2-209;Adgrl2-207,Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,10,99633,ENSMUSG00000028184,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13845,cg02817165,-0.00000417,0.00000546,-0.763660972,0.445650107,loss,ns,0.000000849,0.00000928,0.09155453,0.927111112,pos,ns,-0.003782987,0.002717676,-1.391993471,0.164922212,neg,ns,0.78272085,0.000121255,0.0000935,1.297389927,0.195461706,pos,ns,0.858416633,Rpl31-ps2,Rpl31-ps2_Intergenic_upstream,13,73097560,73097609,73097608,73097609,50,-,TTGTAGTAACAACGCTGTTAAATCAGAAAATTACTCCCCCTTTCTGCACG,Distal Intergenic,13,73233395,73233737,343,1,Rpl31-ps2-201,-135835,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,8,621486,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18141,cg01752243,0.0000263,0.00000265,9.945981533,2.07E-20,gain,yes,-0.000000412,0.0000045,-0.091549734,0.92711492,neg,ns,0.00418077,0.001317314,3.17370733,0.001656104,pos,ns,2.780912495,-0.0000299,0.0000453,-0.660389217,0.509494491,neg,ns,0.047890031,Hsd17b12,Hsd17b12_Exon,2,94241364,94241413,94241364,94241365,50,-,CGCCCTCCGCAAATGCTTTTTGGGGTAAGGGCTTCCGGCTATTGAGTTAT,"Exon (Mir129b-201/Mir129b-201, exon 1 of 1)",2,94032689,94157964,125276,2,Hsd17b12-201,-83449,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,19,56348,ENSMUSG00000027195,mapped to different genes,2,94241115,94241769,655,*,655,63,0.630534351,0.978307255,0.096183206,7.48E-47,CpGisland,TRUE,U3,Pr-B
12733,cg07010694,-0.00000484,0.00000221,-2.186340752,0.029538157,loss,ns,-0.000000344,0.00000376,-0.091431599,0.927208707,neg,ns,-0.000641628,0.001102283,-0.582089471,0.560929497,neg,ns,0.251091722,-0.00000174,0.0000379,-0.045805044,0.963495131,neg,ns,0.945413081,Lancl1,Lancl1_Exon,1,67009270,67009319,67009318,67009319,50,+,CCCTACATAATATTCCTGGTACCATTCATACATCAGTGGAGACTTTGCCG,"Exon (Lancl1-201/Lancl1, exon 6 of 10)",1,67000517,67038865,38349,2,Lancl1-201,29546,Lancl1-201;Lancl1-202;Lancl1-203;Lancl1-204;Lancl1-205,Lancl1;Lancl1;Lancl1;Lancl1;Lancl1,0;0;0;0;29515,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,14768,ENSMUSG00000026000,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20250,cg13349882,-0.00000833,0.00000794,-1.049993357,0.29453902,loss,ns,-0.00000123,0.0000135,-0.091418131,0.927219399,neg,ns,-0.008414103,0.003950246,-2.130020039,0.033957245,neg,ns,1.46906755,0.000326943,0.000135849,2.406671315,0.016683299,pos,ns,0.136230909,Hoxc10,Hoxc10_Exon,15,102970929,102970978,102970929,102970930,50,+,CGAGAGCGCCGCCTGGAGATTAGCAAGACCATTAACCTTACAGACAGACA,"Exon (Hoxc10-201/Hoxc10, exon 2 of 2)",15,102966796,102971893,5098,1,Hoxc10-201,4133,Hoxc10-201;Hoxc5-202,Hoxc10;Hoxc5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,21,209448,ENSMUSG00000022484,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
24727,cg00954841,-0.000000913,0.00000282,-0.323583719,0.746471401,loss,ns,-0.000000438,0.00000479,-0.09133042,0.927289034,neg,ns,0.001150096,0.001404771,0.818706842,0.413582598,pos,ns,0.383437742,-0.0000216,0.0000483,-0.446269834,0.655713901,neg,ns,0.96034126,Tspan9,Tspan9_Intron,6,127979210,127979259,127979258,127979259,50,+,CTGTGCTCTGGACCGTAAAACAAGTTTTCATCAATAAATTAAGATAAGCG,"Intron (Tspan9-203/Tspan9, intron 2 of 7)",6,127961396,128143563,182168,2,Tspan9-203,164304,Tspan9-203;Tspan9-202;Tspan9-201;Tspan9-204;Tspan9-211;Tspan9-209;Tspan9-208;Tspan9-207;Tspan9-206,Tspan9;Tspan9;Tspan9;Tspan9;Tspan9;Tspan9;Tspan9;Tspan9;Tspan9,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,8,109246,ENSMUSG00000030352,conserved gene and region,6,127979148,127979310,163,*,163,13,0.576687117,0.995770677,0.079754601,5.62E-09,CpGisland,TRUE,U11,Tr-P
15806,cg05512265,0.00000699,0.00000511,1.367611071,0.172424506,gain,ns,-0.000000792,0.00000868,-0.091254061,0.927349656,neg,ns,0.002985838,0.002544008,1.173674719,0.241426267,pos,ns,0.617215482,-0.000180563,0.0000875,-2.063849746,0.039863899,neg,ns,0.89543897,Mef2c,Mef2c_fiveUTR,13,83504232,83504281,83504232,83504233,50,-,CGCAGCCCAAACTGGGGGGTTTCTCTTCAAAGCCAGCTGGTCTGGCTTTA,Promoter (<=1kb),13,83504240,83592810,88571,1,Mef2c-221,0,Mef2c-218;Mef2c-228;Mef2c-221;Mef2c-229;Mef2c-201;Mef2c-202,Mef2c;Mef2c;Mef2c;Mef2c;Mef2c;Mef2c,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,9,41,17260,ENSMUSG00000005583,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7692,cg16335529,-0.0000038,0.00000349,-1.090300574,0.276427519,loss,ns,-0.00000054,0.00000592,-0.091206363,0.927387525,neg,ns,0.003869956,0.001735595,2.229757072,0.026479535,pos,ns,1.577089648,-0.000158118,0.0000597,-2.649113604,0.008483831,neg,ns,0.899610477,Entpd7,Entpd7_Exon,19,43725491,43725540,43725491,43725492,50,+,CGCATTGGTGGCCGCTACCATGGGCCAACATTTGCCAAGGCTGCTCAGGT,"Exon (Entpd7-201/Entpd7, exon 10 of 13)",19,43689672,43733697,44026,1,Entpd7-201,35819,Entpd7-201;Entpd7-204;Entpd7-202,Entpd7;Entpd7;Entpd7,0;35651;-827,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,93685,ENSMUSG00000025192,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24292,cg15403305,-0.00000197,0.00000337,-0.585391341,0.558710492,loss,ns,0.000000522,0.00000572,0.091134064,0.927444925,pos,ns,-0.002443496,0.001676624,-1.457390393,0.146020873,neg,ns,0.835585058,0.0000836,0.0000577,1.450262977,0.147996205,pos,ns,0.95255479,Pou3f1,Pou3f1_Intergenic_upstream,4,124511970,124512019,124511970,124511971,50,+,CGGAGCCTGCCTCCAGACTGTTGGCGTTCACGGCTCTGCCTCGCAGCCTC,Distal Intergenic,4,124656807,124660655,3849,1,Pou3f1-201,-144788,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,24,85,18991,ENSMUSG00000090125,mapped to different genes,4,124511867,124512053,187,*,187,13,0.657754011,0.65,0.069518717,0.00000003,CpGisland,TRUE,U15,NS
19260,cg04530845,0.000000655,0.00000289,0.226829802,0.820705593,gain,ns,0.000000447,0.00000491,0.091044728,0.927515851,pos,ns,0.001598119,0.001437336,1.111861639,0.267059175,pos,ns,0.573392498,-0.0000511,0.0000494,-1.032855295,0.302476715,neg,ns,0.948251707,Tnpo1,Tnpo1_Exon,13,98859877,98859926,98859877,98859878,50,-,CGGCTAAGAGTCCAGCATGTTATGGAACGCACAAGAGCCTTTTTATCAGA,"Exon (Tnpo1-201/Tnpo1, exon 13 of 24)",13,98839019,98891040,52022,2,Tnpo1-201,31114,Tnpo1-201;Tnpo1-202;Tnpo1-206;Tnpo1-204,Tnpo1;Tnpo1;Tnpo1;Tnpo1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,9,238799,ENSMUSG00000009470,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1313,cg12988424,0.00000606,0.00000304,1.995024565,0.046915335,gain,ns,0.00000047,0.00000516,0.091027435,0.927529581,pos,ns,-0.001831997,0.001511604,-1.211956083,0.226452117,neg,ns,0.645023614,0.0000922,0.000052,1.77379156,0.077079247,pos,ns,0.055148346,Fezf2,Fezf2_Exon,14,12342577,12342626,12342625,12342626,50,-,TTTCTTTAAGTCAAAGTTTCTGCAAAACCCTTTGCCGCAAGTGGCGCACG,"Exon (Fezf2-203/Fezf2, exon 4 of 4)",14,12342094,12345844,3751,2,Fezf2-203,3218,Fezf2-203;Fezf2-201;Fezf2-202,Fezf2;Fezf2;Fezf2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,45,54713,ENSMUSG00000021743,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
6082,cg18013921,-0.0000652,0.00000914,-7.133879455,6.93E-12,loss,yes,-0.00000141,0.0000155,-0.091027315,0.927529676,neg,ns,-0.007465865,0.004550699,-1.640597437,0.101895214,neg,ns,0.991846213,-0.000361798,0.000156498,-2.311836221,0.021441942,neg,ns,0.754883358,Tenm2,Tenm2_threeUTR,11,36006925,36006974,36006925,36006926,50,+,CGTGGTGACTGTCATGTGATTGTCTCAGTTTCTGGACCAAACAAACACAC,3' UTR,11,36006656,37235882,1229227,2,Tenm2-202,1228908,Tenm2-202;Tenm2-208;Tenm2-201,Tenm2;Tenm2;Tenm2,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,84,23964,ENSMUSG00000049336,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22955,cg05866404,-0.00000921,0.00000353,-2.606860441,0.009579357,loss,ns,0.000000546,0.000006,0.091011746,0.927542037,pos,ns,-0.003310459,0.001758124,-1.882950169,0.0606433,neg,ns,1.217217174,0.000146681,0.0000605,2.426017985,0.015835865,pos,ns,0.913241233,Gm13991,Gm13991_Intergenic_downstream,2,116324595,116324644,116324595,116324596,50,-,CGCGTGCTGAGCCTTTAATTGGGTTTTTAATTTTCCAGGCCATCTGACAA,Distal Intergenic,2,116527843,116528490,648,2,Gm13991-201,203895,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,14,20,433464,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17857,cg08536905,-0.00000271,0.00000146,-1.863253694,0.063372074,loss,ns,-0.000000225,0.00000248,-0.090982323,0.927565397,neg,ns,0.000856667,0.000725093,1.181457577,0.238326551,pos,ns,0.622827572,0.0000157,0.0000249,0.631057155,0.528468144,pos,ns,0.962597764,Nr2c2,Nr2c2_Exon,6,92163196,92163245,92163196,92163197,50,+,CGAAGCTGGATATAGATGGCTATGAGTATGCATACCTTAAAGCTATAGTT,"Exon (Nr2c2-201/Nr2c2, exon 13 of 15)",6,92091390,92173057,81668,1,Nr2c2-201,71806,Nr2c2-201;Nr2c2-202;Nr2c2-205;Nr2c2-207;Nr2c2-206,Nr2c2;Nr2c2;Nr2c2;Nr2c2;Nr2c2,0;0;0;6215;-932,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,22026,ENSMUSG00000005893,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16481,cg02606236,-0.0000297,0.00000893,-3.321393331,0.001002748,loss,ns,-0.00000138,0.0000152,-0.090924748,0.927611108,neg,ns,0.003013084,0.004443386,0.678105306,0.49821076,pos,ns,0.302586898,-0.000259478,0.000152808,-1.698067733,0.090498442,neg,ns,0.5501737,Dmd,Dmd_Exon,X,85144117,85144166,85144165,85144166,50,-,TGGGCTACCTGCCAGTGCAGACTGTCTTAGAGGGGGACAACATGGAAACG,"Exon (Dmd-203/Dmd, exon 70 of 79)",20,82948903,85206141,2257239,1,Dmd-203,2195214,Dmd-203;Dmd-215;Dmd-210;Dmd-207;Dmd-214;Dmd-212;Dmd-202;Dmd-201,Dmd;Dmd;Dmd;Dmd;Dmd;Dmd;Dmd;Dmd,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,20,28,13405,ENSMUSG00000045103,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18764,cg27109284,-0.0000623,0.0000206,-3.02920178,0.002658257,loss,ns,-0.00000317,0.0000349,-0.090835556,0.927681922,neg,ns,0.073975283,0.010233802,7.228523921,3.83E-12,pos,yes,11.41706425,-0.002212287,0.00035194,-6.285983895,1.10E-09,neg,yes,0.58929528,Npepps,Npepps_Exon,11,97224690,97224739,97224690,97224691,50,-,CGATCCACAGGGGGCAGAGAAAGGTCACGAATGCCTGGTAATAAACTTTC,"Exon (Npepps-215/Npepps, exon 16 of 18)",11,97205842,97280486,74645,2,Npepps-215,55747,Npepps-215;Npepps-219;Npepps-201;Npepps-214;Npepps-213;Npepps-217;Npepps-204;Npepps-203;Npepps-206,Npepps;Npepps;Npepps;Npepps;Npepps;Npepps;Npepps;Npepps;Npepps,0;0;0;0;0;0;0;0;10343,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,5,19155,ENSMUSG00000001441,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25616,cg03421587,-0.0000036,0.0000076,-0.473688741,0.636055304,loss,ns,-0.00000117,0.0000129,-0.090735522,0.927761344,neg,ns,-0.003487791,0.003780547,-0.922562425,0.356952748,neg,ns,0.44738927,0.00011621,0.000130013,0.89383945,0.372101199,pos,ns,0.112284181,Ebf3,Ebf3_Promoter,7,137320038,137320087,137320038,137320039,50,-,CGTTCTAATTAACTCTGAAATTTTAGCATGCTTTGGGACACTGGTGTCTG,Promoter (5-6kb),7,137193673,137314445,120773,2,Ebf3-204,-5642,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,9,84,13593,ENSMUSG00000010476,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
49,cg03225524,-0.00000356,0.00000306,-1.162600528,0.245885825,loss,ns,-0.000000471,0.0000052,-0.090709977,0.927781626,neg,ns,0.000804849,0.001522727,0.528557745,0.597490478,pos,ns,0.223669011,-0.0000751,0.0000524,-1.43414116,0.152539914,neg,ns,0.932206225,Cnot3,Cnot3_Exon,7,3651285,3651334,3651285,3651286,50,-,CGCGAACCAGAAAGAAAAGTATGAGGCTGACCTAAAGAAGGAGATTAAGA,Promoter (<=1kb),7,3651309,3655827,4519,1,Cnot3-203,0,Cnot3-208;Cnot3-205;Cnot3-207;Cnot3-201;Cnot3-203;Cnot3-204,Cnot3;Cnot3;Cnot3;Cnot3;Cnot3;Cnot3,6017;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,4,232791,ENSMUSG00000035632,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25580,cg24822857,-0.0000217,0.00000628,-3.446921361,0.00064531,loss,ns,-0.000000967,0.0000107,-0.090590108,0.927876797,neg,ns,0.000273989,0.003127985,0.087592785,0.930256891,pos,ns,0.031397104,-0.0000445,0.000107571,-0.413801166,0.679305863,neg,ns,0.884851552,Ebf3,Ebf3_Intron,7,137258292,137258341,137258292,137258293,50,+,CGCCTAAACTTACCCTGTTTATTTGCAGGCCAGAGGAATGCATGATTGTT,"Intron (Ebf3-204/Ebf3, intron 6 of 15)",7,137193673,137314445,120773,2,Ebf3-204,56104,Ebf3-204;Ebf3-201;Ebf3-202;Ebf3-203;Ebf3-208;Ebf3-205,Ebf3;Ebf3;Ebf3;Ebf3;Ebf3;Ebf3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,62,84,13593,ENSMUSG00000010476,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4693,cg22893791,0.000011,0.00000271,4.049059724,0.000065,gain,ns,0.000000416,0.0000046,0.090576994,0.927887209,pos,ns,-0.001861042,0.001346779,-1.381846913,0.168013678,neg,ns,0.774655361,0.0000619,0.0000463,1.33648928,0.182369495,pos,ns,0.076211465,Garem2,Garem2_Exon,5,30114395,30114444,30114443,30114444,50,+,GCTACAAGCTGGTTAGCATCATCTCCAAGACGGTGGTGCTGGGGCTGGCG,"Exon (Garem2-201/Garem2, exon 4 of 6)",5,30105161,30118378,13218,1,Garem2-201,9234,Garem2-201;Hadha-205;Hadha-201,Garem2;Hadha;Hadha,0;40718;40532,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,242915,ENSMUSG00000044576,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
1538,cg13364785,-0.000022,0.0000085,-2.590676582,0.010031463,loss,ns,-0.00000131,0.0000144,-0.090515669,0.927935899,neg,ns,-0.001773948,0.00422979,-0.419393761,0.675218859,neg,ns,0.170555436,-0.000272471,0.000145462,-1.873140382,0.061989877,neg,ns,0.626248604,Gm11826,Gm11826_Intergenic_downstream,4,13480654,13480703,13480702,13480703,50,-,ACAAACAGCAGCTGTGTGTTTGCTCACGCAAATTATTAATTCTGGCCTCG,Distal Intergenic,4,13482755,13483192,438,2,Gm11826-201,2538,Gm11826-201,Gm11826,2489,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,6,100039988,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2009,cg24895764,-0.0000571,0.0000119,-4.789781804,0.00000259,loss,ns,0.00000183,0.0000203,0.090490686,0.927955735,pos,ns,-0.010302172,0.005938283,-1.734873721,0.083757075,neg,ns,1.0769785,0.0000619,0.000204217,0.303321702,0.761848169,pos,ns,0.866430366,Sugct,Sugct_Intron,13,17086556,17086605,17086604,17086605,50,+,GAAACCACTGTTTAAGGTAGAAAATCATTTTTCAATCTCAGGAAACATCG,"Intron (Sugct-201/Sugct, intron 12 of 13)",13,16857472,17694739,837268,2,Sugct-201,608134,Sugct-201,Sugct,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,192136,ENSMUSG00000055137,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25819,cg27155698,0.00000852,0.00000425,2.005919228,0.045733418,gain,ns,-0.000000653,0.00000722,-0.090453831,0.927984997,neg,ns,-0.000373059,0.002114321,-0.176443658,0.860060621,neg,ns,0.065470937,0.0000519,0.0000727,0.713135217,0.476298565,pos,ns,0.063654701,Uncx,Uncx_Intergenic_downstream,5,139553090,139553139,139553138,139553139,50,-,CGCAGGAGCCTGCTTTGTAAATCCTATTTGGGGACTTTCAATAACTATCG,Distal Intergenic,5,139543898,139545268,1371,1,Uncx-202,9241,Uncx-201,Uncx,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,59,88,22255,ENSMUSG00000029546,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
27262,cg11452595,-0.00000474,0.00000289,-1.641037431,0.10180379,loss,ns,0.000000443,0.0000049,0.090437757,0.927997759,pos,ns,0.001384444,0.001436272,0.963914871,0.335839917,pos,ns,0.473867686,-0.000066,0.0000494,-1.335453554,0.182707662,neg,ns,0.928894695,Eef1aknmt,Eef1aknmt_Exon,1,162546217,162546266,162546217,162546218,50,+,CGACCGCCCACCTGCAGGACACGGCCAACCTCAGCCAGCATCCTGTCCAC,"Exon (Eef1aknmt-201/Eef1aknmt, exon 2 of 8)",1,162532127,162548551,16425,2,Eef1aknmt-201,2285,Eef1aknmt-201;Eef1aknmt-204;Eef1aknmt-206;Eef1aknmt-207;Eef1aknmt-203;Eef1aknmt-202;Eef1aknmt-205;Eef1aknmt-208,Eef1aknmt;Eef1aknmt;Eef1aknmt;Eef1aknmt;Eef1aknmt;Eef1aknmt;Eef1aknmt;Eef1aknmt,0;0;-1855;0;0;0;0;2263,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,71449,ENSMUSG00000026694,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27827,cg07483210,-0.0000144,0.0000172,-0.836548164,0.403490973,loss,ns,-0.00000265,0.0000293,-0.090414911,0.928015898,neg,ns,0.058732487,0.008583434,6.842539462,4.16E-11,pos,yes,10.38048547,-0.001067129,0.000295184,-3.615135865,0.000350221,neg,ns,0.802643442,Esrrg,Esrrg_Intron,1,188162553,188162602,188162601,188162602,50,+,CCCTAAGCTCCTTTTAGCAAATCAAATTTTCACTTTTAGCAAGGATTTCG,"Intron (Esrrg-203/Esrrg, intron 6 of 7)",1,187609029,188214386,605358,1,Esrrg-203,553524,Esrrg-203;Esrrg-201;Esrrg-202,Esrrg;Esrrg;Esrrg,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,60,26381,ENSMUSG00000026610,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24587,cg08392389,-0.00000146,0.00000149,-0.98452047,0.325627435,loss,ns,0.000000228,0.00000252,0.090401029,0.928026921,pos,ns,-0.000216499,0.00073931,-0.292839711,0.76984059,neg,ns,0.113599194,0.0000102,0.0000254,0.401118335,0.688609344,pos,ns,0.954924153,Sfpq,Sfpq_Intron,4,127032613,127032662,127032613,127032614,50,-,CGGAATGTTTTCTGGTGTTCTTGGACTGCAATTATGCACTATTAAAGTAG,"Intron (Sfpq-206/Sfpq, intron 7 of 9)",4,127023527,127037013,13487,1,Sfpq-206,9086,Sfpq-201;Sfpq-206;Sfpq-204,Sfpq;Sfpq;Sfpq,0;0;6657,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,12,71514,ENSMUSG00000028820,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26500,cg22399544,-0.00000758,0.00000278,-2.727825423,0.006738795,loss,ns,0.000000426,0.00000472,0.09013947,0.928234595,pos,ns,-0.000403052,0.001383752,-0.291274545,0.771036149,neg,ns,0.11292526,-0.0000153,0.0000476,-0.321019996,0.748411549,neg,ns,0.931813077,Adgrl2,Adgrl2_Exon,3,148821361,148821410,148821361,148821362,50,+,CGTGGGGTCGAAGAAGAGGGTTTGTTAGTAGGTAATTGCCAGTCATTCCT,"Exon (Adgrl2-210/Adgrl2, exon 6 of 8)",3,148815583,148828548,12966,2,Adgrl2-210,7138,Adgrl2-210;Adgrl2-202;Adgrl2-218;Adgrl2-203;Adgrl2-208;Adgrl2-205;Adgrl2-217;Adgrl2-220;Adgrl2-215;Adgrl2-204;Adgrl2-212;Adgrl2-213;Adgrl2-214;Adgrl2-206;Adgrl2-209;Adgrl2-219;Adgrl2-216,Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2;Adgrl2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,10,99633,ENSMUSG00000028184,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3719,cg23541245,0.0000501,0.0000171,2.931980555,0.003618779,gain,ns,-0.00000262,0.000029,-0.090127453,0.928244137,neg,ns,0.017407435,0.008505447,2.046622153,0.041538289,pos,ns,1.381551394,-0.000242013,0.000292502,-0.82739173,0.408651515,neg,ns,0.611753401,Pou2f2,Pou2f2_Intron,7,25134830,25134879,25134878,25134879,50,+,CATATTTCTCGCCGGATCGATACGTTTGACTCCCGACAAGACAATAATCG,"Intron (Pou2f2-208/Pou2f2, intron 2 of 4)",7,25120618,25179726,59109,2,Pou2f2-208,44847,Pou2f2-203;Pou2f2-209;Pou2f2-201;Pou2f2-206;Pou2f2-204;Pou2f2-205;Pou2f2-202;Pou2f2-210;Pou2f2-208,Pou2f2;Pou2f2;Pou2f2;Pou2f2;Pou2f2;Pou2f2;Pou2f2;Pou2f2;Pou2f2,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,29,18987,ENSMUSG00000008496,mapped to different genes,7,25134752,25134975,224,*,224,23,0.629464286,1.037872683,0.102678571,4.08E-18,CpGisland,TRUE,U13,Hc-P
10384,cg07412048,-0.00000514,0.00000167,-3.078950206,0.002263122,loss,ns,-0.000000255,0.00000283,-0.090123499,0.928247277,neg,ns,-0.001458441,0.000830333,-1.756452752,0.079998489,neg,ns,1.096918217,0.00000254,0.0000286,0.088901214,0.929217824,pos,ns,0.052480095,Mxi1,Mxi1_Promoter,19,53310441,53310490,53310441,53310442,50,+,CGCACTAGGACCCAGGCGCCAGAGTGCCTCCGTCTGTCCTGTAGGTTCAT,Promoter (<=1kb),19,53310518,53373293,62776,1,Mxi1-201,-28,Mxi1-201;Mxi1-208,Mxi1;Mxi1,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,10,17859,ENSMUSG00000025025,conserved gene and region,19,53310332,53310476,145,*,145,12,0.668965517,0.743589744,0.082758621,1.69E-08,CpGisland,TRUE,U1,Pr-A
6091,cg01675972,-0.000000323,0.00000264,-0.122303376,0.902738005,loss,ns,0.000000404,0.00000449,0.09008568,0.928277305,pos,ns,0.00253454,0.001315217,1.927089213,0.054882205,pos,ns,1.260568452,-0.0000934,0.0000452,-2.064660791,0.039786511,neg,ns,0.933442943,Kpna1,Kpna1_threeUTR,16,36015922,36015971,36015922,36015923,50,-,CGGCAAAGTGGCCAGCAACAGAGTCCTGATCCAAATGGAGAAAGGGAACC,3' UTR,16,35983315,36037131,53817,1,Kpna1-201,32607,Kpna1-201;Kpna1-209;Kpna1-205;Kpna1-207;Kpna1-210;Kpna1-202;Kpna1-206,Kpna1;Kpna1;Kpna1;Kpna1;Kpna1;Kpna1;Kpna1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,5,16646,ENSMUSG00000022905,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19361,cg20668148,-0.000021,0.00000459,-4.582086661,0.00000668,loss,ns,0.000000701,0.0000078,0.089899496,0.928425137,pos,ns,-0.002952717,0.002285905,-1.291705875,0.19742123,neg,ns,0.704606146,0.000111504,0.0000786,1.418406643,0.157076585,pos,ns,0.919575022,Foxp1,Foxp1_Intron,6,99097437,99097486,99097437,99097438,50,+,CGCCTGAGTATTACAATAGCAGAAATCAAGAGACATATTAGGTGGAACTG,"Intron (Foxp1-206/Foxp1, intron 3 of 17)",6,98925338,99266515,341178,2,Foxp1-206,169029,Foxp1-206;Foxp1-204;Foxp1-220;Foxp1-201;Foxp1-205;Foxp1-207;Foxp1-208;Foxp1-226;Foxp1-228;Foxp1-221;Foxp1-222;Foxp1-218;Foxp1-223,Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,87,108655,ENSMUSG00000030067,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
27042,cg23300110,-0.0000363,0.00000458,-7.921886899,4.23E-14,loss,yes,-0.0000007,0.00000778,-0.089889499,0.928433075,neg,ns,-0.006195518,0.002280212,-2.71707991,0.006956164,neg,ns,2.157630215,0.0000385,0.0000784,0.490840678,0.623886411,pos,ns,0.948135285,Dlgap4,Dlgap4_threeUTR,2,156764309,156764358,156764357,156764358,50,+,CCTGCCCCTCCCTACCTCACAGGCATGTTGTGAGAATAAATGAGGTAACG,3' UTR,2,156613705,156764361,150657,1,Dlgap4-205,150604,Dlgap4-205;Dlgap4-212;Dlgap4-206;Dlgap4-202;Dlgap4-209;Dlgap4-204;Dlgap4-208;Dlgap4-213;Dlgap4-201;Dlgap4-203;Dlgap4-207,Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4;Dlgap4,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,17,228836,ENSMUSG00000061689,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27606,cg06928484,-0.0000151,0.00000418,-3.620598263,0.000343204,loss,ns,-0.000000638,0.0000071,-0.089862638,0.928454403,neg,ns,-0.00578671,0.002078803,-2.783673861,0.005704776,neg,ns,2.243761391,0.000121436,0.0000715,1.698646412,0.090389155,pos,ns,0.909064926,Vangl2,Vangl2_Exon,1,172008507,172008556,172008555,172008556,50,-,CCTCTCCGAGGGAATACACCTTGAAGCCAGACACTTTCTTGGCCAGGACG,"Exon (Vangl2-201/Vangl2, exon 5 of 8)",1,172000960,172027295,26336,2,Vangl2-201,18739,Vangl2-201;Vangl2-202;Vangl2-203;Vangl2-205;Vangl2-206;Vangl2-204,Vangl2;Vangl2;Vangl2;Vangl2;Vangl2;Vangl2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,6,93840,ENSMUSG00000026556,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27539,cg09461213,-0.000000408,0.00000244,-0.167411258,0.867155622,loss,ns,0.000000372,0.00000414,0.08981309,0.928493745,pos,ns,-0.0000626,0.001213497,-0.0515494,0.958920939,neg,ns,0.018217198,-0.00000537,0.0000417,-0.128678358,0.897695603,neg,ns,0.932628904,Gm5265,Gm5265_Intergenic_downstream,1,169385868,169385917,169385916,169385917,50,-,GACAGACAGGCACTGAAAAGTAACAACCGTTATCATCTTAAAGCAAAGCG,Distal Intergenic,1,169453528,169453869,342,2,Gm5265-201,68001,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,13,13,383613,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15101,cg07975023,-0.0000406,0.0000119,-3.422666757,0.000703396,loss,ns,0.00000181,0.0000202,0.089787805,0.928513822,pos,ns,-0.020544574,0.005908254,-3.477266362,0.000578948,neg,ns,3.237360302,0.000231848,0.000203184,1.141073413,0.25472009,pos,ns,0.760040495,Rapgef2,Rapgef2_Exon,3,79174990,79175039,79175038,79175039,50,-,GGCTCTAAAACAATGCATTCACAGCCACGCCTAAAACTTCCTGCAGAACG,"Exon (Rapgef2-206/Rapgef2, exon 5 of 30)",3,79062531,79286517,223987,2,Rapgef2-206,111478,Rapgef2-206;Rapgef2-205;Rapgef2-203;Rapgef2-204,Rapgef2;Rapgef2;Rapgef2;Rapgef2,0;-1792;-1690;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,76089,ENSMUSG00000062232,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15497,cg05044267,-0.00000215,0.00000142,-1.510131047,0.132028574,loss,ns,-0.000000217,0.00000242,-0.089715657,0.928571109,neg,ns,0.002505001,0.000708226,3.537009055,0.000466535,pos,ns,3.33111623,-0.000072,0.0000244,-2.956603715,0.003349349,neg,ns,0.963388036,Slc8a3,Slc8a3_Exon,12,81315247,81315296,81315247,81315248,50,+,CGGTACTTTTTGTGCATGTATTTGTAGAAGAGCAGTCGTTTATCTGCCAC,"Exon (Slc8a3-202/Slc8a3, exon 2 of 7)",12,81197915,81333164,135250,2,Slc8a3-202,17868,Slc8a3-202;Slc8a3-201;Slc8a3-203;Slc8a3-205,Slc8a3;Slc8a3;Slc8a3;Slc8a3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,110893,ENSMUSG00000079055,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22689,cg07504616,0.0000197,0.0000058,3.389612393,0.00079044,gain,ns,-0.000000883,0.00000985,-0.089660794,0.928614672,neg,ns,0.002701606,0.002886357,0.935991795,0.350005979,pos,ns,0.455924537,-0.0000688,0.0000993,-0.69280373,0.488951404,neg,ns,0.051996787,Maf,Maf_Exon,8,115706558,115706607,115706606,115706607,50,-,GTTCAGCTGCTGCGGGTAGCCGGTCATCCAGTAGTAGTCTTCCAGGTGCG,Promoter (<=1kb),8,115682942,115707096,24155,2,Maf-201,489,Maf-201;Maf-202,Maf;Maf,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,23,17132,ENSMUSG00000055435,conserved gene and region,8,115705919,115706789,871,*,871,113,0.732491389,0.967968135,0.129735936,6.29E-100,CpGisland,TRUE,U1,Pr-A
19594,cg14395491,0.0000369,0.00000484,7.626539084,2.98E-13,gain,yes,-0.000000735,0.00000822,-0.089462327,0.928772262,neg,ns,0.010070276,0.002408027,4.181961985,0.0000377,pos,ns,4.424159509,-0.00025104,0.0000828,-3.031448515,0.002639126,neg,ns,0.068268513,Gm8641,Gm8641_Intergenic_upstream,9,99994965,99995014,99994965,99994966,50,-,CGGGCTTTTGAGGCGGTGGAAATTGATAAGGTTCATCTGCATACAAAAGG,Distal Intergenic,9,99946564,99947389,826,2,Gm8641-201,-47625,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,15,667456,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
22409,cg12472290,-0.0000355,0.0000144,-2.468722085,0.014098704,loss,ns,0.00000218,0.0000244,0.089454555,0.928778434,pos,ns,-0.024580109,0.007150907,-3.437341334,0.000667695,neg,ns,3.175421612,0.000758425,0.000245919,3.084042932,0.002225884,pos,ns,0.581644651,Ndufs4,Ndufs4_Intergenic_upstream,13,114406705,114406754,114406705,114406706,50,+,CGTGACAGTAATTCCCTGTCAGATAAAACTGAGGTATTGTTTTGGATTCC,Distal Intergenic,13,114287795,114388258,100464,2,Ndufs4-201,-18447,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,17993,ENSMUSG00000021764,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2296,cg07169730,-0.000022,0.00000655,-3.356585411,0.000887363,loss,ns,0.000000995,0.0000111,0.089438698,0.928791026,pos,ns,-0.003591493,0.003258325,-1.102251319,0.271207434,neg,ns,0.56669841,-0.000114147,0.000112054,-1.018685691,0.309146555,neg,ns,0.902869766,Cdh10,Cdh10_Exon,15,18964135,18964184,18964135,18964136,50,-,CGCGCACAAGCTATTAACAGAAGAACTCTGAGGCCAGTAGAGCCAGAGTC,"Exon (Cdh10-202/Cdh10, exon 3 of 12)",15,18818947,19014236,195290,1,Cdh10-202,145188,Cdh10-202;Cdh10-205;Cdh10-201;Cdh10-203,Cdh10;Cdh10;Cdh10;Cdh10,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,320873,ENSMUSG00000022321,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17383,cg09635905,-0.0000037,0.00000351,-1.053581722,0.292894951,loss,ns,0.000000533,0.00000597,0.089301783,0.928899743,pos,ns,-0.001354155,0.001747591,-0.774869204,0.439007579,neg,ns,0.357527982,0.000100679,0.0000601,1.675209932,0.094901409,pos,ns,0.964661588,Ubap2l,Ubap2l_Exon,3,90000941,90000990,90000989,90000990,50,-,CTGGGGCTTCTGCGGGATGGAGCTGGTCTGGCTACGTTGCCCGCTGCCCG,"Exon (Ubap2l-202/Ubap2l, exon 28 of 28)",3,90000140,90052455,52316,2,Ubap2l-215,51465,Hax1-201;Hax1-205;Hax1-203;Hax1-202;Hax1-206;Hax1-209;Hax1-204;Hax1-207;Hax1-208;Hax1-210;Hax1-211;Hax1-212;Ubap2l-215;Ubap2l-201;Ubap2l-202;Ubap2l-208;Ubap2l-217;Ubap2l-223,Hax1;Hax1;Hax1;Hax1;Hax1;Hax1;Hax1;Hax1;Hax1;Hax1;Hax1;Hax1;Ubap2l;Ubap2l;Ubap2l;Ubap2l;Ubap2l;Ubap2l,-2244;-2275;-4988;-4671;-2264;-2255;-2321;-2552;-4605;-2261;-2161;-2579;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,15,74383,ENSMUSG00000042520,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20402,cg15482199,0.0000612,0.0000108,5.64322235,3.77E-08,gain,yes,-0.00000165,0.0000184,-0.089282701,0.928914895,neg,ns,0.005082699,0.00539867,0.941472539,0.347195824,pos,ns,0.459425508,-0.00016334,0.00018566,-0.879781293,0.379659286,neg,ns,0.143486627,Hoxc4,Hoxc4_Intron,15,103032739,103032788,103032739,103032740,50,-,CGAATTAAAGGTAGATTGACTAATCACGGCGGCGATCATAATAATAAAAT,"Intron (Hoxc4-202/Hoxc4, intron 1 of 3)",15,103018934,103036405,17472,1,Hoxc4-202,13805,Hoxc4-202;Hoxc4-201,Hoxc4;Hoxc4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,91,15423,ENSMUSG00000075394,conserved gene and region,15,103032736,103032961,226,*,226,19,0.517699115,1.262198707,0.084070797,2.37E-13,CpGisland,TRUE,U13,Hc-P
13101,cg02400954,-0.00000555,0.00000228,-2.430111651,0.015661507,loss,ns,-0.000000346,0.00000388,-0.089176562,0.928999177,neg,ns,0.000589,0.001135703,0.518621646,0.604394604,pos,ns,0.218679422,-0.0000122,0.0000391,-0.312846798,0.754607418,neg,ns,0.94764205,Dnah2,Dnah2_Exon,11,69451056,69451105,69451056,69451057,50,+,CGCAGTTCCAACAGCATCTTCTGGGAATACTGAGCTACTGACCAGTGCAT,"Exon (Dnah2-201/Dnah2, exon 57 of 85)",11,69420809,69544556,123748,2,Dnah2-201,93451,Dnah2-201;Dnah2-202,Dnah2;Dnah2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,10,327954,ENSMUSG00000005237,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5918,cg06276678,-0.00000714,0.00000932,-0.766667236,0.443862827,loss,ns,0.00000141,0.0000158,0.089155284,0.929016073,pos,ns,-0.003240543,0.004636333,-0.698945279,0.485110276,neg,ns,0.314159526,0.000158166,0.000159443,0.991991057,0.321975541,pos,ns,0.861680019,Ddx39b,Ddx39b_Exon,17,35251284,35251333,35251284,35251285,50,+,CGCTGCATGGGTTGCAGCAGTACTACGTGAAACTGAAGGACAACGAGAAG,"Exon (Ddx39b-201/Ddx39b, exon 7 of 11)",17,35241746,35253707,11962,1,Ddx39b-201,9538,Ddx39b-201;Ddx39b-205;Ddx39b-204;Ddx39b-203;Ddx39b-202,Ddx39b;Ddx39b;Ddx39b;Ddx39b;Ddx39b,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,53817,ENSMUSG00000019432,mapped to different genes,17,35251261,35251404,144,*,144,11,0.527777778,1.125,0.076388889,0.000000184,CpGisland,TRUE,U10,Tr-S
13744,cg19613722,0.0000442,0.00000566,7.817054347,8.50E-14,gain,yes,0.000000857,0.00000962,0.08909973,0.929060186,pos,ns,0.008384247,0.002817242,2.976048183,0.003149696,pos,ns,2.501731321,-0.00019679,0.0000969,-2.031176989,0.043089951,neg,ns,0.085249089,Dcc,Dcc_Promoter,18,72351243,72351292,72351243,72351244,50,-,CGCAGGGATGCCCTCTGTGGGCAAAGCGTGGGAAGTCACTTTTGTCAATG,Promoter (<=1kb),18,71253634,72351069,1097436,2,Dcc-202,-223,Dcc-202;Dcc-201;Dcc-203,Dcc;Dcc;Dcc,0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,4,13176,ENSMUSG00000060534,conserved gene and region,18,72351074,72351270,197,*,197,12,0.598984772,0.777631579,0.060913706,0.000000498,CpGisland,TRUE,NA,NRS
126,cg13719093,-0.00000353,0.0000014,-2.519566792,0.012252358,loss,ns,0.000000212,0.00000238,0.089087639,0.929069788,pos,ns,0.000268172,0.000698124,0.384132384,0.701143681,pos,ns,0.154192976,-0.0000272,0.000024,-1.131833219,0.258579313,neg,ns,0.971191277,Kdm2a,Kdm2a_Exon,19,4324361,4324410,4324361,4324362,50,+,CGCATACATTCACAAAGTTCTCTGCGGCTGAGGTAGCGGAAGACAGACAT,"Exon (Kdm2a-201/Kdm2a, exon 17 of 21)",19,4314419,4398285,83867,2,Kdm2a-201,73875,Kdm2a-201;Kdm2a-202;Kdm2a-213;Kdm2a-211;Kdm2a-207;Kdm2a-214;Kdm2a-212;Kdm2a-210,Kdm2a;Kdm2a;Kdm2a;Kdm2a;Kdm2a;Kdm2a;Kdm2a;Kdm2a,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,21,30,225876,ENSMUSG00000054611,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8914,cg18888015,0.00000733,0.00000348,2.106766963,0.035941058,gain,ns,-0.000000526,0.00000591,-0.089027551,0.929117502,neg,ns,0.003036075,0.001731447,1.753489443,0.080506325,pos,ns,1.094169996,-0.0000654,0.0000595,-1.098312057,0.272920553,neg,ns,0.044474431,Helt,Helt_Promoter,8,46295433,46295482,46295433,46295434,50,-,CGCCAAAGCGCACGGCTCACAAAGGGAGCAAGTAGCTGCCACAGGGAACT,Promoter (<=1kb),8,46292039,46294671,2633,2,Helt-201,-811,Helt-201;Helt-202;Helt-203,Helt;Helt;Helt,0;-1444;-2098,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,15,22,234219,ENSMUSG00000047171,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
8209,cg12433841,0.00000127,0.00000369,0.343946768,0.731119497,gain,ns,0.000000557,0.00000627,0.088860891,0.929249844,pos,ns,0.000763606,0.001837136,0.415650132,0.677953604,pos,ns,0.168800026,-0.000034,0.0000632,-0.537626287,0.591220802,neg,ns,0.954629478,Kmt2a,Kmt2a_Exon,9,44850039,44850088,44850039,44850040,50,+,CGAGGACTAGTTTTAACTGTGTATAGAAATTAAACAATGAAGAGCATATA,"Exon (Kmt2a-201/Kmt2a, exon 3 of 36)",9,44803355,44881296,77942,2,Kmt2a-201,31208,Kmt2a-201;Kmt2a-202;Kmt2a-205;Kmt2a-203;Kmt2a-206,Kmt2a;Kmt2a;Kmt2a;Kmt2a;Kmt2a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,10,214162,ENSMUSG00000002028,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13400,cg01153166,0.0000886,0.0000112,7.907360896,4.66E-14,gain,yes,-0.00000169,0.000019,-0.088849496,0.929258893,neg,ns,0.010819962,0.005577009,1.940101443,0.053274022,pos,ns,1.273484512,-0.000255269,0.000191793,-1.330964066,0.184178891,neg,ns,0.082925742,Nr2f2,Nr2f2_Intron,7,70360924,70360973,70360972,70360973,50,-,GGGGGCCAAGTCCAGGGCAGCCCACAGTCAGCCATTCAGGAAAGCCATCG,"Intron (Nr2f2-202/Nr2f2, intron 1 of 2)",7,70354439,70366735,12297,2,Nr2f2-202,5762,Nr2f2-201;Nr2f2-202;Nr2f2-205;Nr2f2-204;Nr2f2-206,Nr2f2;Nr2f2;Nr2f2;Nr2f2;Nr2f2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,69,11819,ENSMUSG00000030551,conserved gene but different region,7,70360972,70361447,476,*,476,81,0.798319328,1.068062827,0.170168067,1.89E-83,CpGisland,TRUE,U1,Pr-A
7998,cg13111832,0.0000855,0.00000669,12.78509925,2.38E-30,gain,yes,0.00000101,0.0000114,0.088767281,0.92932418,pos,ns,0.011401343,0.003329913,3.423915902,0.000700289,pos,ns,3.15472296,-0.000140207,0.000114515,-1.224354538,0.22174814,neg,ns,0.048799966,Pax2,Pax2_Intergenic_upstream,19,44675025,44675074,44675073,44675074,50,-,CAAATTCCTGGCATCTTTACTAGTTGCAGCCAATTTCGGCGATTTCGGCG,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-81020,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,19,44675061,44675159,99,*,99,13,0.696969697,1.086993243,0.131313131,7.58E-12,CpGisland,TRUE,U13,Hc-P
9093,cg00500681,-0.00000729,0.00000232,-3.1427037,0.001835785,loss,ns,-0.000000349,0.00000394,-0.088707089,0.929371977,neg,ns,-0.00286094,0.001154105,-2.478925404,0.01370953,neg,ns,1.862977436,0.0000102,0.0000397,0.255998048,0.798122133,pos,ns,0.045745982,Bicral,Bicral_fiveUTR,17,46858415,46858464,46858463,46858464,50,-,TACACTCAAAGGGAAACTCACCGTCATGAAAAAGCAGTGCCTTGTCAACG,Promoter (<=1kb),17,46825795,46858482,32688,2,Bicral-203,18,Bicral-203,Bicral,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,4,210982,ENSMUSG00000036568,conserved gene and region,17,46858436,46858691,256,*,256,44,0.76953125,1.164598842,0.171875,1.00E-45,CpGisland,TRUE,U1,Pr-A
7610,cg01634979,0.0000721,0.000016,4.516188845,0.00000896,gain,ns,0.00000241,0.0000271,0.08867584,0.929396793,pos,ns,0.021520633,0.007948634,2.707462875,0.007156049,pos,ns,2.145326666,-0.000566071,0.000273353,-2.070842676,0.039200847,neg,ns,0.318177548,Pdss2,Pdss2_Exon,10,43439802,43439851,43439802,43439803,50,+,CGAGAAAGAATCAAAGCTGGCAAAGGTGTGACTTCAGCTATTGACCTGTG,"Exon (Pdss2-201/Pdss2, exon 8 of 8)",10,43221486,43440602,219117,1,Pdss2-201,218316,Pdss2-201;Pdss2-202;Pdss2-205,Pdss2;Pdss2;Pdss2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,6,71365,ENSMUSG00000038240,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2604,cg13106750,0.00000992,0.00000243,4.082333288,0.0000568,gain,ns,-0.000000366,0.00000413,-0.088609983,0.92944909,neg,ns,-0.003695099,0.001209338,-3.055471313,0.002442334,neg,ns,2.612194922,0.0000789,0.0000416,1.897752935,0.058657516,pos,ns,0.933176552,Cdk16,Cdk16_fiveUTR,X,20693327,20693376,20693375,20693376,50,-,GCCATGGATCGGATGAAGAAGATCAAACGGCAGCTGTCAATGACACTCCG,5' UTR,20,20687954,20699880,11927,1,Cdk16-202,5373,Cdk16-202;Cdk16-206;Cdk16-201;Cdk16-207;Cdk16-203;Cdk16-204;Cdk16-208;Cdk16-205,Cdk16;Cdk16;Cdk16;Cdk16;Cdk16;Cdk16;Cdk16;Cdk16,0;0;0;0;0;0;-3029;-3069,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,6,18555,ENSMUSG00000031065,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23873,cg17571666,0.000257584,0.0000104,24.85492525,8.94E-76,gain,yes,0.00000156,0.0000176,0.088559607,0.929489094,pos,ns,0.003482459,0.005158014,0.675155099,0.50008049,pos,ns,0.300960089,0.000277409,0.000177384,1.563892717,0.118862988,pos,ns,0.339887922,Cdan1,Cdan1_threeUTR,2,120730421,120730470,120730469,120730470,50,+,TGAGGTGAAGCAGGTCTTGGGCTTGGAGAGTGACCGCTCTTCGCTCACCG,3' UTR,2,120716154,120731517,15364,2,Cdan1-202,1047,Cdan1-202;Cdan1-201;Cdan1-207;Cdan1-204;Cdan1-209;Cdan1-208;Cdan1-206;Stard9-205;Stard9-202;Ttbk2-202;Ttbk2-203;Ttbk2-201,Cdan1;Cdan1;Cdan1;Cdan1;Cdan1;Cdan1;Cdan1;Stard9;Stard9;Ttbk2;Ttbk2;Ttbk2,0;0;0;-2444;-1783;0;0;0;15153;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,3,68968,ENSMUSG00000027284,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U4,Pr-F
16861,cg27231389,0.000000667,0.00000433,0.154319238,0.877458447,gain,ns,0.00000065,0.00000735,0.088497958,0.92953805,pos,ns,0.002536851,0.002152811,1.178389964,0.239544916,pos,ns,0.620613041,-0.000102449,0.000074,-1.383792734,0.167417459,neg,ns,0.893322848,Ythdc1,Ythdc1_Exon,5,86828096,86828145,86828096,86828097,50,-,CGAGAACCAGTCCGGGATGTGGGAAGGTTAGAAACGTTCTTTGGACTGAT,"Exon (Ythdc1-202/Ythdc1, exon 10 of 16)",5,86804221,86836654,32434,1,Ythdc1-202,23875,Ythdc1-202;Ythdc1-203;Ythdc1-208;Ythdc1-201;Ythdc1-207;Ythdc1-206;Ythdc1-205;Ythdc1-204,Ythdc1;Ythdc1;Ythdc1;Ythdc1;Ythdc1;Ythdc1;Ythdc1;Ythdc1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,17,231386,ENSMUSG00000035851,conserved gene and region,5,86828042,86828208,167,*,167,10,0.479041916,1.076724694,0.05988024,0.00000716,CpGisland,TRUE,U10,Tr-S
6324,cg11924156,-0.0000025,0.00000323,-0.773242879,0.439967857,loss,ns,0.000000486,0.00000549,0.088483411,0.929549602,pos,ns,-0.000685952,0.001608683,-0.426405786,0.670108128,neg,ns,0.173855114,-0.0000255,0.0000553,-0.461420638,0.644820442,neg,ns,0.949004658,Nkrf,Nkrf_Exon,X,36890486,36890535,36890486,36890487,50,+,CGGCTTGCTTTTTAGGAGGATTTTGACCTATAGAATGAGTGAAATTTACA,"Exon (Nkrf-202/Nkrf, exon 3 of 3)",20,36887540,36903513,15974,2,Nkrf-202,12978,Nkrf-202;Nkrf-201,Nkrf;Nkrf,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,77286,ENSMUSG00000044149,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13825,cg13237033,0.0000032,0.00000225,1.423279115,0.155660871,gain,ns,-0.000000338,0.00000382,-0.088477291,0.929554462,neg,ns,-0.0000337,0.001117804,-0.030184114,0.975939641,neg,ns,0.010577041,0.00000592,0.0000384,0.153880557,0.87780404,pos,ns,0.041010782,Six1,Six1_fiveUTR,12,73046685,73046734,73046733,73046734,50,-,GTGGATGCTGCTAGTTGCCGGGGAACTTGGTTTCTGTTCTCCCCGCAGCG,Promoter (<=1kb),12,73041827,73047179,5353,2,Six1-201,445,Six1-204;Six1-201;Six1-203;Six1-202,Six1;Six1;Six1;Six1,0;0;0;-1394,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,18,20471,ENSMUSG00000051367,conserved gene but different region,12,73046199,73046874,676,*,676,70,0.680473373,0.895601484,0.103550296,2.09E-54,CpGisland,TRUE,U3,Pr-B
24142,cg17634564,-0.00000714,0.00000151,-4.718245724,0.00000361,loss,ns,0.000000227,0.00000257,0.088420528,0.929599538,pos,ns,-0.000928316,0.000752645,-1.233404751,0.21835918,neg,ns,0.660828545,0.00000984,0.0000259,0.380331168,0.703960065,pos,ns,0.043104672,D630033A02Rik,D630033A02Rik_Exon,10,122985622,122985671,122985622,122985623,50,-,CGCTGAGCATCACCAGCACTAGCAAGGCAGTAGCTTGCGCAGTTATCTCC,Promoter (<=1kb),10,122985074,122985831,758,2,D630033A02Rik-202,160,D630033A02Rik-202;D630033A02Rik-201,D630033A02Rik;D630033A02Rik,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,402753,NA,mapped to different genes,10,122985225,122985694,470,*,470,59,0.644680851,1.224498808,0.125531915,1.84E-51,CpGisland,TRUE,U1,Pr-A
10933,cg13046396,0.0000415,0.0000229,1.814493769,0.070568227,gain,ns,0.00000343,0.0000388,0.088401529,0.929614626,pos,ns,0.100498616,0.011381109,8.830301119,7.86E-17,pos,yes,16.10441587,-0.002414933,0.000391395,-6.170059105,2.13E-09,neg,yes,0.535215775,Tcf7l2,Tcf7l2_Intron,19,55890245,55890294,55890293,55890294,50,+,TCATGACAACATGCCATTAGAAATTGCCGTCCTGTTGATCAATCCTCTCG,"Intron (Tcf7l2-213/Tcf7l2, intron 4 of 13)",19,55741820,55933229,191410,1,Tcf7l2-213,148425,Tcf7l2-213;Tcf7l2-201;Tcf7l2-208;Tcf7l2-211;Tcf7l2-212;Tcf7l2-206;Tcf7l2-204;Tcf7l2-205;Tcf7l2-222;Tcf7l2-215;Tcf7l2-214;Tcf7l2-207;Tcf7l2-202;Tcf7l2-209;Tcf7l2-210;Tcf7l2-217;Tcf7l2-220;Tcf7l2-218,Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,55,88,21416,ENSMUSG00000024985,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10649,cg12617967,-0.00000417,0.00000157,-2.660816812,0.008200996,loss,ns,0.000000235,0.00000266,0.08838219,0.929629983,pos,ns,0.000518573,0.000780452,0.664453137,0.506894269,pos,ns,0.295082619,-0.0000134,0.0000268,-0.497407851,0.619254084,neg,ns,0.963422412,Rnf212b,Rnf212b_Exon,14,54816517,54816566,54816517,54816518,50,-,CGAAAAGATGGGGCCCATTTCTTTGTCACCAGCTGTGGCCATATTTTCTG,"Exon (Rnf212b-201/Rnf212b, exon 2 of 15)",14,54814141,54854095,39955,1,Rnf212b-201,2376,Rnf212b-201;Rnf212b-202;Rnf212b-207;Rnf212b-205;Rnf212b-206;Rnf212b-204,Rnf212b;Rnf212b;Rnf212b;Rnf212b;Rnf212b;Rnf212b,0;0;0;0;0;-3572,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,102632837,ENSMUSG00000112858,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4930,cg09596855,0.00000148,0.00000287,0.518035814,0.604802792,gain,ns,-0.00000043,0.00000487,-0.088358218,0.929649021,neg,ns,0.001109429,0.001426465,0.777747172,0.437311225,pos,ns,0.359209375,0.00000791,0.0000491,0.161224583,0.87202154,pos,ns,0.957455082,Mkln1,Mkln1_Exon,6,31468203,31468252,31468203,31468204,50,+,CGTTACTTGGATTCCTCTGTGAGGAACAGCAAATCTCTGAAAAGTGACTT,"Exon (Mkln1-201/Mkln1, exon 10 of 18)",6,31398735,31516811,118077,1,Mkln1-201,69468,Mkln1-201;Mkln1-204;Mkln1-210;Mkln1-208;Mkln1-207,Mkln1;Mkln1;Mkln1;Mkln1;Mkln1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,27418,ENSMUSG00000025609,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20116,cg23543309,0.0000296,0.00000667,4.445972654,0.0000122,gain,ns,0.000001,0.0000113,0.08835394,0.929652418,pos,ns,0.006722812,0.003317974,2.026179782,0.043602408,pos,ns,1.360489527,-0.000141631,0.000114105,-1.24123651,0.215456802,neg,ns,0.0142519,Atp5g2,Atp5g2_fiveUTR,15,102672349,102672398,102672349,102672350,50,+,CGAGCGACGCCATTACAGGAATGTAATTTTGCCCGGATGAGGCCCCGAGT,Promoter (<=1kb),15,102665801,102672352,6552,2,Atp5g2-203,0,Atp5g2-202;Atp5g2-201;Atp5g2-204;Atp5g2-203,Atp5g2;Atp5g2;Atp5g2;Atp5g2,-1222;-4600;-4606;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,8,18,67942,ENSMUSG00000062683,mapped to different genes,15,102672078,102672489,412,*,412,37,0.621359223,0.940117176,0.089805825,1.33E-26,CpGisland,TRUE,U1,Pr-A
25614,cg03092673,0.0000817,0.00000607,13.45442728,8.14E-33,gain,yes,-0.000000911,0.0000103,-0.088312927,0.929684987,neg,ns,0.007577732,0.003023377,2.506380202,0.012709286,pos,ns,1.895878861,0.0000217,0.000103974,0.20849796,0.834977099,pos,ns,0.163404779,Ebf3,Ebf3_Promoter,7,137316819,137316868,137316867,137316868,50,-,AGCTCATTTTCTAGATCATCTGGTCCCGCACCCAAAGCGTGGAAAATACG,Promoter (2-3kb),7,137193673,137314445,120773,2,Ebf3-204,-2423,Ebf3-204;Ebf3-201;Ebf3-202;Ebf3-203;Ebf3-208;Ebf3-206,Ebf3;Ebf3;Ebf3;Ebf3;Ebf3;Ebf3,0;0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,9,84,13593,ENSMUSG00000010476,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
25675,cg19445230,-0.0000278,0.00000965,-2.881164408,0.004238424,loss,ns,-0.00000145,0.0000164,-0.088280969,0.929710366,neg,ns,-0.000210274,0.004803751,-0.043772966,0.965113558,neg,ns,0.015421583,-0.000288165,0.000165201,-1.74433608,0.082091618,neg,ns,0.435102209,Gal3st4,Gal3st4_fiveUTR,5,138271544,138271593,138271592,138271593,50,+,TCTTGGTTGAGTCTGCCCCCTGAGTTAGCAGATTTTTGCCTCTGTCAGCG,5' UTR,5,138264921,138272840,7920,2,Gal3st4-203,1247,Gal3st4-203;Gal3st4-201;Gal3st4-202;Gal3st4-205;Gal3st4-204;Gm43720-201;Gpc2-205;Gpc2-203;Gpc2-206;Gpc2-207;Gpc2-201;Gpc2-204,Gal3st4;Gal3st4;Gal3st4;Gal3st4;Gal3st4;Gm43720;Gpc2;Gpc2;Gpc2;Gpc2;Gpc2;Gpc2,0;0;0;0;0;0;8412;8369;8389;8392;8372;6644,TRUE,FALSE,FALSE,TRUE,TRUE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,1,330217,ENSMUSG00000075593,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
15151,cg02317025,0.000072,0.00000533,13.51912113,4.68E-33,gain,yes,-0.000000798,0.00000905,-0.088225328,0.929754553,neg,ns,0.013428216,0.002650597,5.066110405,0.000000699,pos,ns,6.155724372,-0.000174768,0.0000912,-1.917287204,0.056120326,neg,ns,0.1068496,Cerkl,Cerkl_Promoter,2,79456935,79456984,79456935,79456936,50,-,CGGAGCGCTCCATTCCGGCCCCTTTGTGGCCAGAAGAAAGTGGCCCATCT,Promoter (<=1kb),2,79338569,79456785,118217,2,Cerkl-210,-199,Cerkl-210;Neurod1-201,Cerkl;Neurod1,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,13,15,228094,ENSMUSG00000075256,mapped to different genes,2,79456843,79457022,180,*,180,14,0.622222222,0.830039526,0.077777778,1.72E-09,CpGisland,TRUE,NA,NRS
18589,cg02524816,0.0000607,0.00000935,6.494834409,3.30E-10,gain,yes,0.0000014,0.0000159,0.088037404,0.929903791,pos,ns,-0.00458703,0.004652223,-0.985986828,0.324908499,neg,ns,0.488238928,0.000275372,0.00015999,1.721190102,0.086214027,pos,ns,0.167680086,Hoxb5,Hoxb5_Exon,11,96303621,96303670,96303621,96303622,50,+,CGTACTTTGTAAACTCCTTCTCGGGGCGTTATCCAAATGGCCCGGACTAT,Promoter (<=1kb),11,96303336,96306121,2786,1,Hoxb5-202,285,Hoxb5-202;Hoxb5-201;Hoxb6-202;Hoxb6-201,Hoxb5;Hoxb5;Hoxb6;Hoxb6,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,22,34,15413,ENSMUSG00000038700,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
3476,cg09771800,-0.00000305,0.00000335,-0.912318377,0.362310072,loss,ns,-0.000000499,0.00000568,-0.087731321,0.930146869,neg,ns,0.002280317,0.001665083,1.369491659,0.171836886,pos,ns,0.764883606,-0.000113675,0.0000573,-1.985172826,0.048006244,neg,ns,0.932256223,Bcl11a,Bcl11a_Exon,11,24163635,24163684,24163635,24163636,50,+,CGTCTAGCCCACCGCTGTCCCCAGGCCGGCCCAGCCCTATGCAAAGGTTA,"Exon (Bcl11a-201/Bcl11a, exon 4 of 5)",11,24078056,24173194,95139,1,Bcl11a-201,85579,Bcl11a-201;Bcl11a-203;Bcl11a-202;Bcl11a-204;Bcl11a-206,Bcl11a;Bcl11a;Bcl11a;Bcl11a;Bcl11a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,51,98,14025,ENSMUSG00000000861,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27653,cg22879626,0.0000083,0.00000391,2.12239617,0.034597044,gain,ns,0.000000582,0.00000664,0.087612671,0.930241097,pos,ns,0.002755532,0.001945427,1.416414678,0.157658174,pos,ns,0.802283507,-0.0000688,0.0000669,-1.02861395,0.304463014,neg,ns,0.868698512,Grem2,Grem2_Exon,1,174837092,174837141,174837092,174837093,50,+,CGGTGACCACCAGGGCCTCCTGGCTGGAGGCCAGCACCTCCTTGATCTGG,"Exon (Grem2-201/Grem2, exon 2 of 2)",1,174833785,174921819,88035,2,Grem2-201,84678,Grem2-201,Grem2,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,23893,ENSMUSG00000050069,conserved gene and region,1,174836786,174837093,308,*,308,21,0.581168831,0.813175761,0.068181818,7.48E-13,CpGisland,TRUE,NA,NRS
7454,cg20260587,0.00000306,0.00000197,1.555460895,0.120856629,gain,ns,0.000000293,0.00000335,0.087601224,0.930250189,pos,ns,-0.00059894,0.000980437,-0.610890543,0.54171969,neg,ns,0.266225379,0.00000337,0.0000337,0.100035553,0.920380761,pos,ns,0.043159899,Pou3f3,Pou3f3_Exon,1,42693529,42693578,42693577,42693578,50,+,TTCATAGCAGTAATTTAGACAAAATCCTCACTGTATATTAATGAAAGGCG,Promoter (1-2kb),1,42694925,42703176,8252,1,Pou3f3-202,-1347,Pou3f3-202;Pou3f3-201,Pou3f3;Pou3f3,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,37,18993,ENSMUSG00000045515,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
15673,cg10635588,-0.000000348,0.00000168,-0.206830387,0.83627811,loss,ns,0.00000025,0.00000286,0.08756672,0.930277591,pos,ns,0.000736628,0.000836966,0.880116625,0.379477904,pos,ns,0.420813506,-0.0000133,0.0000288,-0.462135422,0.644308374,neg,ns,0.035845311,Nfyb,Nfyb_fiveUTR,10,82763987,82764036,82763987,82763988,50,+,CGAAGCGAGACACAAACCTCCAATGCAGCCCTGGTTGGCTCCCGTCTCCA,Promoter (<=1kb),10,82748701,82764144,15444,2,Nfyb-204,108,Nfyb-204;Nfyb-206;Nfyb-201;Nfyb-205,Nfyb;Nfyb;Nfyb;Nfyb,0;0;-324;-341,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,3,18045,ENSMUSG00000020248,conserved gene but different region,10,82763363,82764321,959,*,959,132,0.740354536,1.016110001,0.137643379,1.24E-120,CpGisland,TRUE,U1,Pr-A
22729,cg06437093,-0.0000132,0.0000144,-0.912530299,0.362198733,loss,ns,-0.00000214,0.0000245,-0.087543361,0.930296142,neg,ns,0.006014155,0.007174615,0.838254703,0.402533526,pos,ns,0.395197942,-0.000454419,0.000246734,-1.841733436,0.06646928,neg,ns,0.706079336,Meis2,Meis2_threeUTR,2,115863311,115863360,115863359,115863360,50,+,AACACATAGAATATCTAACATGAAACAATTAATAGACCGAACTCTGTACG,3' UTR,2,115863064,116065047,201984,2,Meis2-201,201687,Meis2-201;Meis2-203;Meis2-205;Meis2-206;Meis2-204;Meis2-202;Meis2-208;Meis2-219;Meis2-216;Meis2-218;Meis2-214;Meis2-207;Meis2-215,Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,97,17536,ENSMUSG00000027210,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19240,cg04297442,-0.0000179,0.00000653,-2.74837401,0.006340127,loss,ns,0.00000097,0.0000111,0.087519834,0.930314827,pos,ns,-0.00984752,0.00324843,-3.031470181,0.002638942,neg,ns,2.578570098,0.000270054,0.000111713,2.417388001,0.016209064,pos,ns,0.816403725,Gm18148,Gm18148_Intergenic_upstream,14,98833615,98833664,98833615,98833616,50,-,CGAGAAAATATCTGCTATGCCGATCTTTAGGTTAATAGGAACAGAAATGG,Distal Intergenic,14,98922654,98923527,874,1,Gm18148-201,-89039,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,9,100416529,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11028,cg03283286,-0.0000224,0.00000844,-2.655195255,0.008335778,loss,ns,-0.00000125,0.0000143,-0.087498948,0.930331415,neg,ns,-0.002084711,0.004198386,-0.496550426,0.619858035,neg,ns,0.207707765,-0.0000622,0.000144382,-0.431084856,0.666706275,neg,ns,0.848334205,Gm13518,Gm13518_Intergenic_downstream,2,56316339,56316388,56316339,56316340,50,+,CGACCTGCTCAGTCTCTCGTGGCAACTATTGAATTCTGACTGAGGCCACT,Distal Intergenic,2,56039853,56040085,233,1,Gm13518-201,276486,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,37,37,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20325,cg13765319,-0.00000629,0.00000349,-1.800247458,0.07279361,loss,ns,-0.000000519,0.00000593,-0.08747267,0.930352284,neg,ns,-0.004137293,0.001737606,-2.381030211,0.017867972,neg,ns,1.747924733,0.0000815,0.0000598,1.363949759,0.173572874,pos,ns,0.926840589,Unc79,Unc79_Exon,12,102998448,102998497,102998448,102998449,50,+,CGCACAGGGAAGAAGGAAAACCAAGATGCCTCCAATTTGACAGTGCCCAT,"Exon (Unc79-202/Unc79, exon 3 of 49)",12,102948859,103184001,235143,1,Unc79-202,49589,Unc79-202;Unc79-208;Unc79-209;Unc79-204;Unc79-201;Unc79-205,Unc79;Unc79;Unc79;Unc79;Unc79;Unc79,0;0;-2570;-3341;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,24,217843,ENSMUSG00000021198,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11559,cg23374964,-0.00000828,0.0000136,-0.611026719,0.541629653,loss,ns,0.00000201,0.000023,0.087354052,0.930446489,pos,ns,-0.010321068,0.006747827,-1.52953944,0.127150509,neg,ns,0.895681898,0.000197743,0.000232057,0.852129948,0.394799796,pos,ns,0.234795047,Vax1,Vax1_Promoter,19,59171556,59171605,59171604,59171605,50,-,AGGTTTGGCTGAGAATTTTTCCACACAATTCCAAGAATGGGGCGGAGGCG,Promoter (1-2kb),19,59166187,59170056,3870,2,Vax1-201,-1549,Vax1-201;Vax1-202,Vax1;Vax1,0;-4576,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,12,18,22326,ENSMUSG00000006270,conserved gene and region,19,59171598,59171841,244,*,244,23,0.717213115,0.750869682,0.094262295,3.18E-17,CpGisland,TRUE,U13,Hc-P
13998,cg07298772,0.0000213,0.00000854,2.498667341,0.012983513,gain,ns,0.00000127,0.0000145,0.087321442,0.930472388,pos,ns,0.006367502,0.004251041,1.497868881,0.135184847,pos,ns,0.869071986,0.0000418,0.000146193,0.28613657,0.774964641,pos,ns,0.187129276,Gm13668,Gm13668_Intergenic_upstream,2,74129437,74129486,74129485,74129486,50,-,TAGTGCATCTGTGTGAGTTAGACTTCTCTGATGAAAGCATAAGGCAGACG,Distal Intergenic,2,73959669,73960669,1001,2,Gm13668-201,-168817,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,18,20,667729,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24679,cg20231144,-0.00000874,0.00000417,-2.098426888,0.036676386,loss,ns,-0.000000618,0.00000708,-0.087255696,0.930524604,neg,ns,0.001369513,0.002073431,0.660505615,0.509419918,pos,ns,0.292924078,-0.0000746,0.0000713,-1.046058955,0.296348761,neg,ns,0.938074394,Lrp1,Lrp1_Exon,10,127589643,127589692,127589691,127589692,50,-,CTTAGCCCATTGGGCCAAAGCACTGTCTTGGAGGTGACAAAGATGTCTCG,"Exon (Lrp1-201/Lrp1, exon 13 of 89)",10,127538161,127621148,82988,2,Lrp1-201,31456,Lrp1-201;Lrp1-204;Lrp1-203,Lrp1;Lrp1;Lrp1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,8,16971,ENSMUSG00000040249,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14869,cg13835023,0.00000403,0.00000216,1.861628333,0.063601737,gain,ns,0.000000321,0.00000368,0.087228926,0.930545865,pos,ns,-0.001461695,0.001076857,-1.35737144,0.175650572,neg,ns,0.755350433,0.000072,0.000037,1.943304446,0.052884286,pos,ns,0.915646283,Phf12,Phf12_threeUTR,11,78028255,78028304,78028303,78028304,50,-,CTATGGTCACTGTAACTACGTGTCCGGGAAACATGCCTGCATATTCTACG,3' UTR,11,77982802,78030539,47738,1,Phf12-201,45453,Dhrs13-201;Dhrs13-204;Dhrs13-203;Dhrs13-202;Phf12-202;Phf12-201;Phf12-207;Phf12-206;Phf12-208;Phf12-205;Phf12-203;Phf12-204,Dhrs13;Dhrs13;Dhrs13;Dhrs13;Phf12;Phf12;Phf12;Phf12;Phf12;Phf12;Phf12;Phf12,-3976;-4045;-4048;-4055;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,11,27,268448,ENSMUSG00000037791,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3655,cg03604970,-0.000023,0.0000165,-1.390431231,0.165395374,loss,ns,-0.00000245,0.0000281,-0.087226209,0.930548023,neg,ns,-0.006521388,0.008234884,-0.791922225,0.429011579,neg,ns,0.367530986,0.000263761,0.000283197,0.931368181,0.352387899,pos,ns,0.309304345,Erfl,Erfl_Promoter,7,24949102,24949151,24949150,24949151,50,-,TGTCAAGTAATGAATCAATTTCGACTAAATTTTCCATTTTTCAGAGGCCG,Promoter (4-5kb),7,24927445,24944494,17050,2,Erfl-201,-4657,Erfl-201,Erfl,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,29,36,,NA,mapped to different genes,7,24948874,24949205,332,*,332,30,0.545180723,1.304006284,0.090361446,9.36E-22,CpGisland,TRUE,U13,Hc-P
9468,cg22464182,-0.00000495,0.00000125,-3.962404626,0.0000921,loss,ns,-0.000000185,0.00000212,-0.087166754,0.930595242,neg,ns,0.000348494,0.000622246,0.560058263,0.575844175,pos,ns,0.239695022,-0.00000717,0.0000214,-0.335068025,0.737800388,neg,ns,0.046560817,Acvr2a,Acvr2a_fiveUTR,2,48814675,48814724,48814675,48814676,50,+,CGGTTGATTTTACACCAGGAGGTTTGTCTCCGAGGAAGACCCAGGGAACT,Promoter (<=1kb),2,48814109,48903269,89161,1,Acvr2a-201,566,Acvr2a-201;Gm13489-201,Acvr2a;Gm13489,0;-4120,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,7,10,11480,ENSMUSG00000052155,conserved gene and region,2,48814621,48814980,360,*,360,29,0.588888889,0.929901131,0.080555556,1.40E-19,CpGisland,TRUE,U1,Pr-A
5307,cg10709021,-0.0000172,0.0000112,-1.537894192,0.125094528,loss,ns,-0.00000166,0.000019,-0.087125771,0.930627791,neg,ns,0.013444744,0.005568188,2.414563438,0.016332887,pos,ns,1.786937033,-0.000506783,0.00019149,-2.646532395,0.008547379,neg,ns,0.334645386,Purg,Purg_Exon,8,33386534,33386583,33386534,33386535,50,-,CGAGTGGACATCCAGAAAAAGAGGTTTTACCTAGACGTGAAGCAAAGCTC,Promoter (<=1kb),8,33386325,33387388,1064,1,Purg-201,209,Purg-201;Purg-202;Wrn-202;Wrn-201;Wrn-203,Purg;Purg;Wrn;Wrn;Wrn,0;0;-1007;-1062;-1026,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,75029,ENSMUSG00000049184,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
687,cg26966072,-0.00000692,0.00000421,-1.646301704,0.100715034,loss,ns,0.000000622,0.00000715,0.086995982,0.930730871,pos,ns,-0.004615609,0.002093536,-2.204695221,0.028209711,neg,ns,1.549601362,-0.00000214,0.000072,-0.029745569,0.97628911,neg,ns,0.828598481,Gm49535,Gm49535_Intergenic_downstream,16,8048487,8048536,8048535,8048536,50,-,CCTCAGTTTGGGGAGTACCAGATGAAATCAATCACACCTCCCACTTATCG,Distal Intergenic,16,8103374,8103788,415,2,Gm49535-201,55301,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,5,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19866,cg12752586,-0.00000197,0.00000155,-1.266647784,0.206232121,loss,ns,0.00000023,0.00000264,0.086946744,0.930769978,pos,ns,-0.000697568,0.000773915,-0.901349189,0.368102419,neg,ns,0.434031329,0.0000327,0.0000266,1.230405346,0.219478175,pos,ns,0.041065916,Gm12795,Gm12795_Intron,4,101356818,101356867,101356818,101356819,50,-,CGGGTCTCATGACCGGGAAGGGAGAAAAACAAAAGGGAGACGAGACACAA,"Intron (0610043K17Rik-201/0610043K17Rik-201, intron 1 of 3)",4,101362177,101362890,714,2,Gm12795-201,6072,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,100416255,NA,mapped to different genes,4,101356818,101356931,114,*,114,14,0.649122807,1.197299325,0.122807018,2.66E-12,CpGisland,TRUE,U1,Pr-A
25078,cg06573397,0.00000298,0.00000515,0.579182261,0.562886814,gain,ns,0.00000076,0.00000875,0.086911722,0.930797793,pos,ns,0.000282929,0.002562105,0.110428394,0.912141091,pos,ns,0.039937979,-0.0000542,0.0000881,-0.615600834,0.538609686,neg,ns,0.91242084,Nfasc,Nfasc_Exon,1,132582989,132583038,132583037,132583038,50,+,TCTCACCTGTACTGGTCATAAAGGTGATGACGGTACTGCTGATGCCCTCG,"Exon (Nfasc-202/Nfasc, exon 27 of 30)",1,132564690,132741757,177068,2,Nfasc-202,158719,Nfasc-202;Nfasc-201;Nfasc-207;Nfasc-203;Nfasc-205;Nfasc-204,Nfasc;Nfasc;Nfasc;Nfasc;Nfasc;Nfasc,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,10,269116,ENSMUSG00000026442,conserved gene and region,1,132583019,132583077,59,*,59,7,0.610169492,1.311111111,0.118644068,0.00000415,CpGisland,TRUE,U11,Tr-P
4454,cg20785169,-0.0000396,0.00000805,-4.92206418,0.00000139,loss,yes,0.00000119,0.0000137,0.086892634,0.930812953,pos,ns,0.00037894,0.004007171,0.094565532,0.924721023,pos,ns,0.033989269,-0.000341387,0.000137806,-2.477296644,0.013771007,neg,ns,0.889124626,Epha7,Epha7_Exon,4,28947590,28947639,28947638,28947639,50,+,GTCCATCAATTCGCCAAGGAGCTAGATGCCTCCTGTATTAAAATTGAGCG,"Exon (Epha7-201/Epha7, exon 10 of 17)",4,28813131,28967499,154369,1,Epha7-201,134459,Epha7-202;Epha7-201;Epha7-204;Epha7-203;Epha7-205;Epha7-206,Epha7;Epha7;Epha7;Epha7;Epha7;Epha7,0;0;0;0;75749;75666,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,5,13841,ENSMUSG00000028289,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27393,cg21673805,-0.000000666,0.00000183,-0.364009442,0.716099102,loss,ns,-0.00000027,0.00000311,-0.086864834,0.930835032,neg,ns,0.000187989,0.000910796,0.206400778,0.836613356,pos,ns,0.077475207,0.0000262,0.0000313,0.835115906,0.404295592,pos,ns,0.054743203,Pou2f1,Pou2f1_fiveUTR,1,166002554,166002603,166002602,166002603,50,-,ATGATTACCTGCTGCTGCTGCCGCCGCGGCTGAACTCTCATCTTGACTCG,Promoter (<=1kb),1,165865154,166002678,137525,2,Pou2f1-208,75,Pou2f1-208;Pou2f1-206;Pou2f1-216;Pou2f1-209;Pou2f1-201;Pou2f1-215;Pou2f1-214;Pou2f1-211;Pou2f1-212,Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1;Pou2f1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,18,18986,ENSMUSG00000026565,conserved gene and region,1,166002575,166002857,283,*,283,35,0.71024735,1.103252395,0.123674912,1.89E-30,CpGisland,TRUE,NA,NRS
20644,cg14858768,0.00000496,0.00000142,3.496949562,0.000539377,gain,ns,0.000000209,0.00000241,0.086859307,0.930839422,pos,ns,0.002645553,0.000706442,3.744898572,0.00021511,pos,ns,3.667339788,-0.0000727,0.0000243,-2.993096469,0.00298368,neg,ns,0.026747693,Adamts6,Adamts6_Promoter,13,104288657,104288706,104288657,104288658,50,-,CGCGTTTTATCCAAATAGATTTAGCGCTGCTGTCTGGAAATGGGCTGCTG,Promoter (<=1kb),13,104287835,104496695,208861,1,Adamts6-207,822,Adamts6-207;Adamts6-202;Adamts6-201;Adamts6-206,Adamts6;Adamts6;Adamts6;Adamts6,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,6,31,108154,ENSMUSG00000046169,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
20481,cg13382372,0.0000415,0.00000618,6.712048588,9.14E-11,gain,yes,-0.000000912,0.0000105,-0.086815714,0.930874046,neg,ns,0.006807602,0.003077861,2.211796777,0.027709776,pos,ns,1.557366983,-0.000094,0.000105847,-0.888296894,0.375069783,neg,ns,0.138431832,Hoxc4,Hoxc4_Intergenic_downstream,15,103061740,103061789,103061740,103061741,50,+,CGCTGCTGTTGAAGGTTAAAAGATGGTCTTCGCTTGACAAGTGGGACTAT,Distal Intergenic,15,103034395,103036852,2458,1,Hoxc4-201,27345,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,32,91,15423,ENSMUSG00000075394,mapped to different genes,15,103061537,103061809,273,*,273,19,0.586080586,0.8125,0.06959707,7.69E-12,CpGisland,TRUE,U13,Hc-P
25292,cg08802662,0.0000599,0.0000314,1.909114626,0.057170416,gain,ns,-0.00000462,0.0000533,-0.086701312,0.930964908,neg,ns,0.105367246,0.015607324,6.751141081,7.23E-11,pos,yes,10.14083013,-0.003158048,0.000536735,-5.883816405,1.04E-08,neg,yes,0.345646547,Lrp6,Lrp6_Exon,6,134479703,134479752,134479703,134479704,50,+,CGGTTTTGGCCACTGGTTTTGTTGGCACGCTCAATGCTGCGTCGGCTCCA,"Exon (Lrp6-201/Lrp6, exon 12 of 23)",6,134446476,134566913,120438,2,Lrp6-201,87161,Lrp6-201,Lrp6,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,11,16974,ENSMUSG00000030201,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12148,cg19962725,-0.0000179,0.00000578,-3.092001061,0.002168821,loss,ns,0.000000849,0.00000981,0.086510444,0.931116504,pos,ns,-0.005440259,0.002874736,-1.892437457,0.059364249,neg,ns,1.22647502,0.000165756,0.0000989,1.676644192,0.094620156,pos,ns,0.072773044,Skor1,Skor1_Intergenic_downstream,9,63136134,63136183,63136182,63136183,50,-,TTTAACTTAATTAGAATCTGGTAAACTAATTAAAGTAGCTACGAGCCCCG,Distal Intergenic,9,63138176,63146980,8805,2,Skor1-201,10846,Skor1-203;Skor1-202;Skor1-201,Skor1;Skor1;Skor1,0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,15,207667,ENSMUSG00000022245,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
13208,cg16697952,0.0000223,0.00000269,8.287045414,3.55E-15,gain,yes,0.000000395,0.00000457,0.086374168,0.931224743,pos,ns,0.002720264,0.001339028,2.031520822,0.04305488,pos,ns,1.365977618,0.0000301,0.000046,0.654032335,0.513575852,pos,ns,0.049974903,Foxb1,Foxb1_fiveUTR,9,69760917,69760966,69760917,69760918,50,-,CGCTTCATTAATGTGCCACTTCTTAGCTATCATATGACAATCGCCTTGGG,Promoter (<=1kb),9,69757710,69760940,3231,2,Foxb1-201,0,Foxb1-201,Foxb1,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,21,64290,ENSMUSG00000059246,conserved gene but different region,9,69760569,69760991,423,*,423,38,0.643026005,0.879754803,0.089834515,2.59E-27,CpGisland,TRUE,U13,Hc-P
26661,cg04191885,-0.00000372,0.00000522,-0.713044705,0.476354491,loss,ns,-0.000000765,0.00000886,-0.086322498,0.931265783,neg,ns,-0.004139255,0.002596697,-1.594046391,0.111944662,neg,ns,0.95099661,-0.000174888,0.0000893,-1.958433585,0.051075617,neg,ns,0.724860182,Pik3cd,Pik3cd_Exon,4,149653838,149653887,149653838,149653839,50,-,CGTCCATGAGCTGGATCATCTGCAGGGTCAGCATGTCCTGCCGGAGGTCT,"Exon (Pik3cd-201/Pik3cd, exon 19 of 24)",4,149649168,149698698,49531,2,Pik3cd-201,44811,Clstn1-202;Pik3cd-201;Pik3cd-204;Pik3cd-214;Pik3cd-206;Pik3cd-205;Pik3cd-202;Pik3cd-203,Clstn1;Pik3cd;Pik3cd;Pik3cd;Pik3cd;Pik3cd;Pik3cd;Pik3cd,67370;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,18707,ENSMUSG00000039936,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8471,cg10268587,0.0000199,0.000006,3.315645977,0.001022868,gain,ns,0.00000088,0.0000102,0.08626817,0.931308933,pos,ns,0.004142635,0.00298832,1.386275914,0.166658909,pos,ns,0.778171466,-0.000154623,0.000102768,-1.504584938,0.133448959,neg,ns,0.139915566,Lbx1,Lbx1_Intergenic_downstream,19,45222760,45222809,45222760,45222761,50,-,CGAAAATGGAAACATATCCAGGGTCCTTAATAAAGTGAATGACGAGGCTT,Distal Intergenic,19,45232684,45235812,3129,2,Lbx1-201,13052,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,30,50,16814,ENSMUSG00000025216,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
8219,cg06097682,0.0000127,0.00000878,1.447672173,0.148719297,gain,ns,-0.00000129,0.0000149,-0.086214175,0.93135182,neg,ns,-0.001346335,0.004370831,-0.308027143,0.758268541,neg,ns,0.120176961,0.0000515,0.000150313,0.342511843,0.732197848,pos,ns,0.790182775,Zcchc7,Zcchc7_Intron,4,44880358,44880407,44880406,44880407,50,+,AGGTTAACTGAAATTTCCTCTGTTGTGTACCTGAACGAATCAGCAGTTCG,"Intron (Zcchc7-203/Zcchc7, intron 2 of 8)",4,44756568,44932203,175636,1,Zcchc7-203,123790,Zcchc7-203;Zcchc7-207;Zcchc7-205;Zcchc7-201,Zcchc7;Zcchc7;Zcchc7;Zcchc7,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,27,27,319885,ENSMUSG00000035649,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12885,cg08550496,-0.00000176,0.000000967,-1.817253497,0.070143686,loss,ns,0.000000142,0.00000164,0.086204349,0.931359625,pos,ns,0.0000683,0.000481416,0.141801051,0.887329262,pos,ns,0.051915196,-0.00000292,0.0000166,-0.176244209,0.860217169,neg,ns,0.02908329,Vps13c,Vps13c_Exon,9,67840484,67840533,67840532,67840533,50,-,GAGAACCTGAACAAGTCCCAGCTGAAGCTGGGCATCTGGGGCGGTAAGCG,Promoter (<=1kb),9,67840396,67995638,155243,1,Vps13c-201,88,Vps13c-201;Vps13c-205,Vps13c;Vps13c,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,320528,ENSMUSG00000035284,conserved gene but different region,9,67840525,67840647,123,*,123,13,0.707317073,0.858754028,0.105691057,1.50E-10,CpGisland,TRUE,U1,Pr-A
58,cg24360837,0.0000144,0.0000111,1.297419363,0.195451596,gain,ns,-0.00000162,0.0000188,-0.086176586,0.931381676,neg,ns,0.01343227,0.005505865,2.439629525,0.015262664,pos,ns,1.816369658,-0.000473452,0.000189346,-2.500454079,0.012919522,neg,ns,0.727601858,Nox3,Nox3_Intergenic_upstream,17,3733157,3733206,3733205,3733206,50,-,CATTATTTACATTTTATCCAAAAACATTTACCTGAGAAAAGGTCATGACG,Distal Intergenic,17,3635240,3696261,61022,2,Nox3-201,-36945,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,6,224480,ENSMUSG00000023802,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
231,cg23752210,-0.000000157,0.000000289,-0.543609698,0.587100791,loss,ns,-4.23E-08,0.000000491,-0.086094138,0.931447162,neg,ns,-0.000367152,0.000143874,-2.551899806,0.011193308,neg,ns,1.951041539,0.00000851,0.00000495,1.719636962,0.08649656,pos,ns,0.993478573,Gm21992,Gm21992_threeUTR,19,4801713,4801762,4801761,4801762,50,-,GAGGACTTTGTCGGCGAGCGGCGGAACGAAAGCTGCGACTCTGATAAACG,3' UTR,19,4742913,4811612,68700,2,Gm21992-203,9850,Gm21992-203;Gm21992-206;Gm21992-204;Gm21992-201;Gm21992-205;Gm21992-202;Rbm14-201;Rbm14-202;Rbm14-203,Gm21992;Gm21992;Gm21992;Gm21992;Gm21992;Gm21992;Rbm14;Rbm14;Rbm14,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,21,48,102902673,ENSMUSG00000096370,mapped to different genes,19,4801605,4801812,208,*,208,24,0.586538462,1.371428571,0.115384615,3.42E-20,CpGisland,TRUE,U10,Tr-S
7553,cg13685290,0.00000257,0.00000166,1.546506366,0.123002551,gain,ns,0.000000243,0.00000282,0.086012252,0.931512204,pos,ns,-0.001012075,0.000826745,-1.224168435,0.221818223,neg,ns,0.654002777,0.0000427,0.0000284,1.500569295,0.13448478,pos,ns,0.055152777,Sobp,Sobp_fiveUTR,10,43174065,43174114,43174113,43174114,50,-,CTGCCATGTTTTTGTGTCTGGTTTCTGTGGAGATGAAATGGCTGCTGCCG,Promoter (<=1kb),10,43002500,43174530,172031,2,Sobp-201,416,Sobp-201;Sobp-202,Sobp;Sobp,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,19,109205,ENSMUSG00000038248,conserved gene and region,10,43174113,43174627,515,*,515,69,0.761165049,0.951991856,0.133980583,2.29E-62,CpGisland,TRUE,U3,Pr-B
19746,cg01890074,0.0000141,0.00000868,1.61818387,0.106639944,gain,ns,0.00000127,0.0000148,0.085775419,0.931700319,pos,ns,-0.00296298,0.004322396,-0.685494835,0.493544003,neg,ns,0.306674121,0.0000931,0.000148647,0.626200761,0.531644071,pos,ns,0.755992936,Scn8a,Scn8a_Exon,15,101018473,101018522,101018473,101018474,50,+,CGTCAAGTTCTTCACCAATGCCTGGTGTTGGCTGGACTTCCTCATTGTGG,"Exon (Scn8a-201/Scn8a, exon 20 of 27)",15,100870683,101045929,175247,1,Scn8a-201,147790,Scn8a-201;Scn8a-204;Scn8a-213;Scn8a-203;Scn8a-205;Scn8a-208;Scn8a-209,Scn8a;Scn8a;Scn8a;Scn8a;Scn8a;Scn8a;Scn8a,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,18,24,20273,ENSMUSG00000023033,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13985,cg14484647,-0.00001,0.00000407,-2.462763302,0.014330487,loss,ns,0.000000593,0.00000692,0.085690393,0.931767856,pos,ns,-0.004473715,0.002026058,-2.208087767,0.027969917,neg,ns,1.553308827,0.0000603,0.0000697,0.865886839,0.387221851,pos,ns,0.914677717,Mecp2,Mecp2_threeUTR,X,74035324,74035373,74035324,74035325,50,-,CGGGAAGCTTTGTCAGAGCCCTACCCATAAGGAGAAGAGACAACAGCTGC,3' UTR,20,74026592,74085669,59078,2,Mecp2-202,50296,Mecp2-202;Mecp2-205;Mecp2-201;Mecp2-203;Mecp2-204,Mecp2;Mecp2;Mecp2;Mecp2;Mecp2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,10,17257,ENSMUSG00000031393,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20553,cg02069735,-0.0000443,0.0000102,-4.347080922,0.0000187,loss,ns,0.00000148,0.0000173,0.085631531,0.931814611,pos,ns,-0.010977992,0.005075066,-2.163123044,0.03129577,neg,ns,1.504514358,0.000111537,0.000174531,0.639067727,0.523250784,pos,ns,0.756917,Gm8730,Gm8730_Intergenic_upstream,8,103439443,103439492,103439491,103439492,50,+,AAATATCCTTCCTGAGCTGGTACCAGGAGGTTTCATTAAAATAGCAGTCG,Distal Intergenic,8,102864845,102865798,954,2,Gm8730-201,-573645,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,4,667618,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15404,cg18055461,-0.00000919,0.00000386,-2.382056824,0.017819153,loss,ns,0.000000559,0.00000656,0.085335744,0.932049562,pos,ns,-0.002547604,0.001920546,-1.326499745,0.185650595,neg,ns,0.731303656,0.00012278,0.000066,1.858968857,0.063979009,pos,ns,0.922986676,Iqgap1,Iqgap1_Exon,7,80725618,80725667,80725666,80725667,50,+,TCAGTCAAGGTCTCTCCTGGCTGGAACCGGATGACATCCACAATTAAACG,"Exon (Iqgap1-201/Iqgap1, exon 33 of 38)",7,80711583,80803416,91834,2,Iqgap1-201,77749,Iqgap1-201;Iqgap1-205,Iqgap1;Iqgap1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,29875,ENSMUSG00000030536,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8839,cg00257941,-0.0000206,0.00000497,-4.141551518,0.0000445,loss,ns,0.000000721,0.00000845,0.085298202,0.932079383,pos,ns,-0.002949073,0.00247565,-1.191231716,0.234473888,neg,ns,0.629905516,-0.000103015,0.0000851,-1.209986269,0.227206003,neg,ns,0.914457224,Gm18112,Gm18112_Intergenic_downstream,12,46020935,46020984,46020983,46020984,50,-,TGCAGATTACATGATGACCCATCAGTGGCTTTGTTGTTTCTGAATTACCG,Distal Intergenic,12,46269750,46273884,4135,2,Gm18112-201,252949,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,5,100416440,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7828,cg06467707,-0.00000185,0.00000126,-1.466404906,0.143551657,loss,ns,0.000000182,0.00000214,0.085017886,0.932302051,pos,ns,0.0000838,0.000627177,0.133654366,0.893762615,pos,ns,0.048777815,-0.0000295,0.0000216,-1.369047982,0.171975384,neg,ns,0.981594571,Ldb2,Ldb2_threeUTR,5,44473413,44473462,44473461,44473462,50,+,CCGCATCATATTGCGTGTTTTCTAATCTAGTGATTAGCCTTTCGTCCTCG,3' UTR,5,44472132,44799619,327488,2,Ldb2-207,326157,Ldb2-207;Ldb2-201;Ldb2-204;Ldb2-205,Ldb2;Ldb2;Ldb2;Ldb2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,9,16826,ENSMUSG00000039706,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10631,cg11675295,0.0000267,0.00000355,7.507448318,6.46E-13,gain,yes,0.000000513,0.00000604,0.084988336,0.932325524,pos,ns,0.001286036,0.001768643,0.727131362,0.46769424,pos,ns,0.330037979,0.0000547,0.0000608,0.899929594,0.368856256,pos,ns,0.078567264,Dnaja4,Dnaja4_Exon,9,54699784,54699833,54699832,54699833,50,-,CGGAGGAGATCAAGAAGGCCTATCGGAAGCTGGCGCTCAAGTACCACCCG,Promoter (<=1kb),9,54698873,54714761,15889,1,Dnaja4-202,911,Dnaja4-202;Dnaja4-203;Dnaja4-201,Dnaja4;Dnaja4;Dnaja4,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,4,58233,ENSMUSG00000032285,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22872,cg12291157,-0.0000522,0.0000114,-4.574894401,0.0000069,loss,ns,-0.00000165,0.0000194,-0.084936886,0.932366394,neg,ns,-0.00252546,0.005684282,-0.444288202,0.657144221,neg,ns,0.182339307,-0.0000361,0.000195482,-0.184635097,0.853635984,neg,ns,0.825556202,Meis2,Meis2_Intron,2,116060227,116060276,116060275,116060276,50,+,ATTGAAATCGTGCAAATTAGCAAAAGAATCGCACCTAAAAGTGGCCTGCG,"Intron (Meis2-201/Meis2, intron 4 of 11)",2,115863064,116065047,201984,2,Meis2-201,4771,Meis2-201;Meis2-203;Meis2-205;Meis2-206;Meis2-204;Meis2-202;Meis2-213;Meis2-210;Meis2-209;Meis2-212,Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2,0;0;0;0;0;0;0;0;0;-1385,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,45,97,17536,ENSMUSG00000027210,conserved gene and region,2,116060275,116060536,262,*,262,18,0.664122137,0.661616162,0.06870229,3.77E-11,CpGisland,TRUE,U13,Hc-P
26889,cg07275387,-0.0000219,0.0000101,-2.164438869,0.031193802,loss,ns,0.00000145,0.0000172,0.084703739,0.932551599,pos,ns,-0.002227635,0.00502727,-0.443110318,0.657995003,neg,ns,0.181777404,-0.000108717,0.000172887,-0.628833222,0.52992132,neg,ns,0.716483492,Prdm16,Prdm16_Intron,4,154456747,154456796,154456795,154456796,50,+,TCAAGCAGAGACCTTTCATTAGAAATATGTTACTTTATGAAATCTGGTCG,"Intron (Prdm16-201/Prdm16, intron 3 of 16)",4,154316125,154636866,320742,2,Prdm16-201,180070,Prdm16-201;Prdm16-202;Prdm16-203;Prdm16-204;Prdm16-205;Prdm16-206;Prdm16-210;Prdm16-207,Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,32,70673,ENSMUSG00000039410,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9077,cg21894467,-0.0000112,0.00000696,-1.615588537,0.107200536,loss,ns,0.000000999,0.0000118,0.084483308,0.932726706,pos,ns,-0.004295095,0.003462902,-1.240316705,0.215796219,neg,ns,0.665956169,-0.00019385,0.000119089,-1.627777979,0.104587856,neg,ns,0.83087762,Gm13469,Gm13469_Intergenic_upstream,2,46801791,46801840,46801839,46801840,50,+,TACAAGCATTGGTTGGTTCCCCACAAAATTTCCATATGCCCTTATTTACG,Distal Intergenic,2,46406220,46406569,350,2,Gm13469-201,-395222,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,20,27,383690,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14854,cg17145823.1,-0.0000265,0.0000102,-2.606620979,0.009585911,loss,ns,-0.00000145,0.0000173,-0.084300795,0.932871694,neg,ns,-0.003934327,0.005054199,-0.778427336,0.436910873,neg,ns,0.359607148,-0.000190295,0.000173813,-1.09482117,0.274444886,neg,ns,0.84719222,Ptprd,Ptprd_Intron,4,77993622,77993671,77993622,77993623,50,+,CGTGGCCAAAGATTTTCAAATAATTGTGTAAAATTGCTCCTGTTATGTAA,"Intron (Ptprd-205/Ptprd, intron 1 of 14)",4,76139382,78211895,2072514,2,Ptprd-205,218224,Ptprd-205;Ptprd-211;Ptprd-209;Ptprd-215;Ptprd-210;Ptprd-207;Ptprd-208,Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,32,19266,ENSMUSG00000028399,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3546,cg19307160,0.00000755,0.00000308,2.455939684,0.014600054,gain,ns,-0.00000044,0.00000522,-0.084272236,0.932894381,neg,ns,-0.001761942,0.001530617,-1.151131676,0.250565158,neg,ns,0.601079319,-0.0000341,0.0000526,-0.647676051,0.517673861,neg,ns,0.940101587,Gm12067,Gm12067_Intron,11,24484102,24484151,24484150,24484151,50,+,ATGGAAAAATCACACAGCAGTAAGTCTATAATCAGGGCTTACAGCATGCG,"Intron (Gm12068-201/Gm12068-201, intron 2 of 3)",11,24552438,24553962,1525,2,Gm12067-201,69811,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,58,100417843,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15290,cg07269134,-0.0000168,0.00000567,-2.962521511,0.003287393,loss,ns,0.000000812,0.00000964,0.084262785,0.932901889,pos,ns,-0.003199423,0.002823806,-1.133018117,0.258082169,neg,ns,0.588242,0.0000301,0.0000971,0.309507965,0.75714309,pos,ns,0.941117341,Srsf7,Srsf7_threeUTR,17,80204693,80204742,80204741,80204742,50,-,GAAGTATCTATAGCCGATCGCTGCATCTAGATGTTTTCTTCAATCTAACG,3' UTR,17,80200080,80207305,7226,2,Srsf7-201,2563,Srsf7-201;Srsf7-202;Srsf7-203;Srsf7-205;Srsf7-206;Srsf7-207;Srsf7-208;Srsf7-204;Ttc39d-202,Srsf7;Srsf7;Srsf7;Srsf7;Srsf7;Srsf7;Srsf7;Srsf7;Ttc39d,0;0;0;0;0;0;0;0;-2718,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,7,8,225027,ENSMUSG00000024097,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20711,cg18604204,-0.0000287,0.00001,-2.860705811,0.00451411,loss,ns,0.00000143,0.000017,0.08420235,0.932949899,pos,ns,-0.001214699,0.004985207,-0.243660713,0.80765477,neg,ns,0.092774238,-0.000391502,0.000171441,-2.283598398,0.023071378,neg,ns,0.783794807,Rnf219,Rnf219_Intergenic_upstream,14,104567822,104567871,104567870,104567871,50,+,ATTATGGTAATATTGGAGGCTGTTGTCCTCTCCCTCCCACAGCTGGGCCG,Distal Intergenic,14,104502386,104522645,20260,2,Rnf219-202,-45177,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,7,72486,ENSMUSG00000022120,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22556,cg06087606,-0.00011521,0.0000143,-8.045144432,1.85E-14,loss,yes,0.00000205,0.0000243,0.084180566,0.932967205,pos,ns,-0.005637149,0.0071274,-0.790912326,0.429599824,neg,ns,0.366935905,-0.000394919,0.000245111,-1.611187941,0.108156424,neg,ns,0.482276827,Rpl19-ps10,Rpl19-ps10_Intergenic_upstream,7,115131921,115131970,115131969,115131970,50,+,CAGAACCTTGTCACTTCAGTAATAATTAAGCTGATGGCCTATTATGTTCG,Distal Intergenic,7,115172056,115172385,330,1,Rpl19-ps10-201,-40086,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,29,668472,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11565,cg22048239,-0.00000204,0.00000146,-1.402053351,0.16189983,loss,ns,0.000000208,0.00000247,0.0841459,0.932994744,pos,ns,0.001815225,0.000725081,2.503480048,0.012811789,pos,ns,1.892390225,-0.0000801,0.0000249,-3.211419671,0.00145949,neg,ns,0.957130836,Fbxo33,Fbxo33_threeUTR,12,59201124,59201173,59201172,59201173,50,+,ACTTAAAACTGGGGTCAGGTGGAAGTCTCACAGAGACCACGTCTGTACCG,3' UTR,12,59200655,59219725,19071,2,Fbxo33-201,18552,Fbxo33-201;Fbxo33-204;Fbxo33-202;Fbxo33-203,Fbxo33;Fbxo33;Fbxo33;Fbxo33,0;0;0;17628,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,7,11,70611,ENSMUSG00000035329,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15395,cg11997548,-0.00000275,0.00000131,-2.089044787,0.037518942,loss,ns,0.000000188,0.00000223,0.084143502,0.932996648,pos,ns,0.0000354,0.000654046,0.054158149,0.956844049,pos,ns,0.01915884,0.0000148,0.0000225,0.65642505,0.512037633,pos,ns,0.968021641,Gria2,Gria2_Intron,3,80690622,80690671,80690622,80690623,50,-,CGCCATTTGGCCTAAGCAAACGGTAAGATTTGCAGAGCCAAATGAGCATT,"Intron (Gria2-201/Gria2, intron 14 of 15)",3,80681450,80802835,121386,2,Gria2-201,112164,Gria2-201;Gria2-202;Gria2-203;Gria2-206,Gria2;Gria2;Gria2;Gria2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,19,14800,ENSMUSG00000033981,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24779,cg16109596,-0.00000882,0.0000051,-1.728631983,0.084870647,loss,ns,-0.000000729,0.00000867,-0.08412157,0.933014072,neg,ns,0.000859511,0.00253862,0.338574061,0.735159828,pos,ns,0.133618232,-0.000228281,0.0000873,-2.614816804,0.009363857,neg,ns,0.936264735,Gm43656,Gm43656_Intergenic_upstream,3,128450646,128450695,128450646,128450647,50,-,CGATTATGAGCATACATGATCTTCCCCTGGAAGACAATAATATTGGCATT,Distal Intergenic,3,128280658,128281091,434,2,Gm43656-201,-169604,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,8,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10465,cg00103762,0.000000576,0.00000104,0.556598735,0.578203191,gain,ns,0.000000148,0.00000176,0.084107503,0.933025247,pos,ns,0.0000728,0.000515302,0.141263413,0.887753604,pos,ns,0.051707556,-0.00000543,0.0000177,-0.30637198,0.759527105,neg,ns,0.966924295,Npas3,Npas3_Intron,12,53692436,53692485,53692484,53692485,50,+,AATAACACATGAGGACAGTCAGACAAAATGAAGACAAATGCTGCTTGTCG,"Intron (Npas3-204/Npas3, intron 3 of 10)",12,53248157,54069532,821376,1,Npas3-204,444279,Npas3-204;Npas3-201;Npas3-203,Npas3;Npas3;Npas3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,83,103,27386,ENSMUSG00000021010,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12819,cg15264681,-0.00000388,0.00000155,-2.500964597,0.01290129,loss,ns,0.000000221,0.00000264,0.083950138,0.933150262,pos,ns,-0.000647115,0.000772159,-0.838058277,0.40264366,neg,ns,0.395079135,0.0000335,0.0000266,1.260030459,0.208606085,pos,ns,0.050257895,Tmem33,Tmem33_Intergenic_upstream,5,67231717,67231766,67231765,67231766,50,+,CATGATGAGCCGTCAGTAATAGGATTATTAAACAAAAACCGTCTCAGGCG,Distal Intergenic,5,67260565,67291461,30897,1,Tmem33-201,-28799,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,22,22,67878,ENSMUSG00000037720,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
1219,cg09643152,-0.0000584,0.0000123,-4.75246171,0.00000308,loss,ns,-0.00000175,0.0000209,-0.083905294,0.933185887,neg,ns,0.010520961,0.006116273,1.720158832,0.086401542,pos,ns,1.063478505,0.000113119,0.000210338,0.537794022,0.591105123,pos,ns,0.584014006,Bcor,Bcor_Intron,X,12069461,12069510,12069461,12069462,50,+,CGCCAACAGCTGTCACATTATTTGCACTCGCTGTAAACAGCCTTCACATT,"Intron (Bcor-202/Bcor, intron 1 of 14)",20,12036740,12080553,43814,2,Bcor-202,11043,Bcor-202;Bcor-203;Bcor-204;Bcor-206;Bcor-201;Bcor-207;Bcor-205,Bcor;Bcor;Bcor;Bcor;Bcor;Bcor;Bcor,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,56,74,71458,ENSMUSG00000040363,conserved gene and region,X,12069326,12069490,165,*,165,13,0.624242424,0.810657596,0.078787879,6.53E-09,CpGisland,TRUE,NA,NRS
10719,cg13546349,-0.00000319,0.0000139,-0.229304569,0.818783414,loss,ns,0.00000198,0.0000236,0.083900068,0.933190039,pos,ns,-0.00449148,0.00692864,-0.648248385,0.517304172,neg,ns,0.286254019,0.00000038,0.000238275,0.001596103,0.998727521,pos,ns,0.835206507,Zfp462,Zfp462_Exon,4,55009862,55009911,55009910,55009911,50,+,AGTCCATCAGCAGCATAAACATTCATTCTGTGACAACTTGCCAAAATTCG,"Exon (Zfp462-203/Zfp462, exon 3 of 13)",4,54947976,55083563,135588,1,Zfp462-203,61886,Zfp462-204;Zfp462-203;Zfp462-201;Zfp462-202,Zfp462;Zfp462;Zfp462;Zfp462,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,23,242466,ENSMUSG00000060206,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6260,cg22938305,0.00000823,0.00000772,1.066747447,0.286915957,gain,ns,0.0000011,0.0000131,0.083834456,0.933242162,pos,ns,-0.004947824,0.0038419,-1.287858722,0.198755674,neg,ns,0.701680464,4.55E-08,0.000132123,0.000344111,0.99972566,pos,ns,0.765881795,Tenm2,Tenm2_Intron,11,36644368,36644417,36644368,36644369,50,+,CGATTTAATGTGAACGATTTGTCAAACGTGCTGTGATAGCAATGCTGTCA,"Intron (Tenm2-202/Tenm2, intron 4 of 30)",11,36006656,37235882,1229227,2,Tenm2-202,591465,Tenm2-202;Tenm2-208;Tenm2-201;Tenm2-204;Tenm2-205,Tenm2;Tenm2;Tenm2;Tenm2;Tenm2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,47,84,23964,ENSMUSG00000049336,conserved gene and region,11,36644308,36644496,189,*,189,13,0.566137566,0.875623664,0.068783069,0.000000034,CpGisland,TRUE,U15,NS
15662,cg00379872,-0.00000379,0.00000154,-2.463100114,0.014317297,loss,ns,-0.000000219,0.00000262,-0.083781831,0.93328397,neg,ns,0.000156676,0.000766657,0.204363105,0.838203863,pos,ns,0.076650342,-0.0000129,0.0000264,-0.487576693,0.626194336,neg,ns,0.963488295,Nfib,Nfib_Intron,4,82604998,82605047,82605046,82605047,50,+,GCTGGGAACACTTCCAAATTTAGGCTTGCACAATTATTTTTATTGGTGCG,"Intron (Nfib-212/Nfib, intron 1 of 1)",4,82498321,82705750,207430,2,Nfib-212,100703,Nfib-212,Nfib,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,66,18028,ENSMUSG00000008575,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8861,cg11440934.1,-0.00000348,0.00000592,-0.588465489,0.556648386,loss,ns,0.000000842,0.0000101,0.083751257,0.93330826,pos,ns,-0.000934844,0.002944386,-0.317500377,0.751077698,neg,ns,0.124315134,-0.0000759,0.000101257,-0.749680643,0.454015607,neg,ns,0.891086727,Gm18112,Gm18112_Intergenic_downstream,12,46075957,46076006,46076005,46076006,50,-,TATTTTCAATGAGCTCCATCAGGAGGTTTCAATGGGCCTGCTATCACTCG,Distal Intergenic,12,46269750,46273884,4135,2,Gm18112-201,197927,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,5,100416440,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25561,cg07209386,0.00000652,0.00000401,1.624431187,0.105300094,gain,ns,-0.000000571,0.00000682,-0.083702606,0.93334691,neg,ns,-0.001066003,0.00199687,-0.533836779,0.59383704,neg,ns,0.226332717,-0.000113574,0.0000687,-1.653850676,0.09917005,neg,ns,0.925739334,Ebf3,Ebf3_Exon,7,137231217,137231266,137231217,137231218,50,+,CGCCTCCCGTGTTTGGAATTGTTGTGCACAAACATGTTGTCTGACACGGC,"Exon (Ebf3-204/Ebf3, exon 8 of 16)",7,137193673,137314445,120773,2,Ebf3-204,83179,Ebf3-204;Ebf3-201;Ebf3-202;Ebf3-203;Ebf3-208;Ebf3-205;Ebf3-207,Ebf3;Ebf3;Ebf3;Ebf3;Ebf3;Ebf3;Ebf3,0;0;0;0;0;0;-4415,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,84,13593,ENSMUSG00000010476,conserved gene and region,7,137231186,137231371,186,*,186,15,0.569892473,1.010869565,0.080645161,2.30E-10,CpGisland,TRUE,U11,Tr-P
18339,cg03336857,-0.000016,0.00000643,-2.482099063,0.01359044,loss,ns,-0.000000915,0.0000109,-0.083679983,0.933364882,neg,ns,-0.003147685,0.00320206,-0.983018829,0.326364746,neg,ns,0.48629676,-0.000192677,0.000110119,-1.749725455,0.081155168,neg,ns,0.763222545,Kcnj6,Kcnj6_Exon,16,94833108,94833157,94833108,94833109,50,+,CGGCTGATGTGTCTTGGCAGGTCATCCCTGGCCTGCTTAGGCAACTTTGG,"Exon (Kcnj6-201/Kcnj6, exon 3 of 5)",16,94748636,94997655,249020,2,Kcnj6-201,164498,Kcnj6-201;Kcnj6-202;Kcnj6-207;Kcnj6-203;Kcnj6-206;Kcnj6-205,Kcnj6;Kcnj6;Kcnj6;Kcnj6;Kcnj6;Kcnj6,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,16522,ENSMUSG00000043301,conserved gene and region,16,94833011,94833131,121,*,121,10,0.561983471,1.061403509,0.082644628,0.000000392,CpGisland,TRUE,U15,NS
27902,cg22506418,0.000000631,0.00000268,0.235478803,0.813992613,gain,ns,0.000000381,0.00000456,0.083657363,0.933382853,pos,ns,-0.002244129,0.001334497,-1.681628574,0.093647953,neg,ns,1.028501711,0.0000391,0.0000459,0.852408903,0.394645245,pos,ns,0.980674526,Prox1,Prox1_Exon,1,190161501,190161550,190161549,190161550,50,+,TGTTTCTGCATGTCCTCCAGCTGCTGTTTCAGCTGTCGGCGCTCCTCTCG,"Exon (Prox1-202/Prox1, exon 2 of 5)",1,190118035,190170714,52680,2,Prox1-202,9164,Prox1-202;Prox1-201;Prox1-203,Prox1;Prox1;Prox1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,19,59,19130,ENSMUSG00000010175,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6035,cg22696118,0.0000134,0.00000384,3.491436323,0.000550197,gain,ns,-0.000000545,0.00000652,-0.083656093,0.933383862,neg,ns,0.00367702,0.001909046,1.926103155,0.055005712,pos,ns,1.259592209,-0.000073,0.0000657,-1.11227484,0.266881806,neg,ns,0.007051592,Cxxc5,Cxxc5_Intergenic_downstream,18,35887728,35887777,35887776,35887777,50,+,GGGGAGGCAGGTGGAGCTGCGTCCTCATCTTTGTTCCCATCTGGAGCGCG,Distal Intergenic,18,35854738,35858619,3882,1,Cxxc5-205,32990,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,49,67393,ENSMUSG00000046668,conserved gene but different region,18,35887596,35887837,242,*,242,21,0.702479339,0.70378064,0.08677686,5.36E-15,CpGisland,TRUE,U3,Pr-B
7030,cg12807557,0.0000398,0.00000738,5.39393132,0.000000137,gain,yes,0.00000105,0.0000125,0.083608609,0.933421585,pos,ns,0.012544615,0.003674433,3.414027645,0.000725238,pos,ns,3.139519375,-0.000192585,0.000126363,-1.524056927,0.128513969,neg,ns,0.102287736,Tfap2a,Tfap2a_Intergenic_downstream,13,40709025,40709074,40709025,40709026,50,+,CGTTCGCAGGGGCTGGGACTTGATAAAAGGAGACAGTTTTCTGAAAAGAT,Distal Intergenic,13,40716724,40728944,12221,2,Tfap2a-209,19870,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,15,57,21418,ENSMUSG00000021359,mapped to different genes,13,40708957,40709041,85,*,85,9,0.658823529,0.977011494,0.105882353,0.000000223,CpGisland,TRUE,U13,Hc-P
21254,cg14809220,-0.0000315,0.00000815,-3.870175249,0.000132621,loss,ns,0.00000116,0.0000138,0.083554357,0.933464686,pos,ns,-0.009022285,0.004055402,-2.224757391,0.026817147,neg,ns,1.571587432,0.0000845,0.000139465,0.606006725,0.544953748,pos,ns,0.863209635,Acss3,Acss3_Exon,10,107004664,107004713,107004712,107004713,50,-,CTTGTCAGAGAGTACTGCTTCCCCAAAGCTGCCCCAGGGTCCTGTTGACG,"Exon (Acss3-203/Acss3, exon 8 of 16)",10,106933517,107123583,190067,2,Acss3-203,118870,Acss3-203;Acss3-201,Acss3;Acss3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,380660,ENSMUSG00000035948,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7582,cg10724261,-0.00000894,0.00000249,-3.585439983,0.000390785,loss,ns,0.000000354,0.00000423,0.083537518,0.933478064,pos,ns,-0.002641327,0.001240381,-2.129448446,0.034004858,neg,ns,1.468459028,0.000037,0.0000427,0.86735936,0.386416032,pos,ns,0.941003528,Dpysl3,Dpysl3_threeUTR,18,43328386,43328435,43328386,43328387,50,+,CGGCCAGCCCCCTGGGTCACGTGCAGGTTGCCATCTTCCAGCATGATCTT,3' UTR,18,43320984,43438286,117303,2,Dpysl3-204,109851,Dpysl3-204;Dpysl3-206;Dpysl3-202;Dpysl3-201;Dpysl3-205,Dpysl3;Dpysl3;Dpysl3;Dpysl3;Dpysl3,0;0;0;0;17529,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,2,22240,ENSMUSG00000024501,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3760,cg12934306,0.0000255,0.00000761,3.351901603,0.000901972,gain,ns,-0.00000108,0.0000129,-0.083441796,0.933554111,neg,ns,0.012397778,0.003786296,3.274381399,0.001178727,pos,ns,2.928586688,-0.000293432,0.00013021,-2.253517988,0.024925005,neg,ns,0.197187669,Grin1,Grin1_threeUTR,2,25291970,25292019,25291970,25291971,50,+,CGGGTGGGCTTCCCTCAGGCCTTCCCGAGCAGCAGGACCCATCAGTGTCC,3' UTR,2,25291181,25319095,27915,2,Grin1-203,27076,Grin1-203;Grin1-204;Grin1-207;Grin1-208;Grin1-201;Grin1-202;Grin1-206;Grin1-205;Grin1-209;Grin1-210;Lrrc26-201;Tmem210-201;Tmem210-202,Grin1;Grin1;Grin1;Grin1;Grin1;Grin1;Grin1;Grin1;Grin1;Grin1;Lrrc26;Tmem210;Tmem210,0;0;0;0;0;0;0;0;0;0;2055;3825;3769,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,7,14810,ENSMUSG00000026959,conserved gene and region,2,25291829,25292106,278,*,278,16,0.715827338,0.450658561,0.057553957,7.61E-09,CpGisland,TRUE,U13,Hc-P
21535,cg11167025,-0.00000785,0.00000172,-4.578327585,0.00000679,loss,ns,0.000000243,0.00000291,0.083375279,0.933606957,pos,ns,-0.001248687,0.000853799,-1.46250763,0.144615204,neg,ns,0.839786045,0.00000546,0.0000294,0.186039127,0.852535754,pos,ns,0.96641081,Zfhx3,Zfhx3_Intron,8,108113693,108113742,108113693,108113694,50,-,CGTTTTCTCAATGAAAAATTTGGTGCTGCCAAGAGATCCTAAGAGGAACT,"Intron (Zfhx3-204/Zfhx3, intron 1 of 15)",8,107942644,108961630,1018987,1,Zfhx3-204,171049,Zfhx3-204;Zfhx3-207,Zfhx3;Zfhx3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,114,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15389,cg03214411,-0.00000269,0.00000188,-1.429619298,0.153833303,loss,ns,0.000000265,0.00000319,0.083192083,0.933752501,pos,ns,0.00052088,0.000934787,0.55721749,0.577780933,pos,ns,0.238236794,-0.0000358,0.0000321,-1.114294055,0.266016221,neg,ns,0.963242098,Gria2,Gria2_threeUTR,3,80689181,80689230,80689229,80689230,50,+,GGAAGATGGGTTAATATTCTGTGCATTCTTTGCCACCTTCATTCGTTTCG,3' UTR,3,80681450,80802835,121386,2,Gria2-201,113605,Gria2-201;Gria2-202;Gria2-203;Gria2-206,Gria2;Gria2;Gria2;Gria2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,12,19,14800,ENSMUSG00000033981,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6408,cg09258317,0.0000125,0.00000385,3.251298844,0.001275257,gain,ns,-0.000000544,0.00000654,-0.0831663,0.933772985,neg,ns,0.00447145,0.001915338,2.334548148,0.020205342,pos,ns,1.694533803,-0.000135366,0.0000659,-2.055103884,0.040706597,neg,ns,0.081375451,Pknox2,Pknox2_Exon,9,37147118,37147167,37147166,37147167,50,-,ATACTCTGGCTTGGGGACTGGAATAAAACACACGCGCTCTGAGGCAGCCG,Promoter (<=1kb),9,36890982,37147407,256426,2,Pknox2-201,240,Pknox2-201;Pknox2-202;Pknox2-209;Pknox2-212;Pknox2-211;Pknox2-213;Pknox2-214,Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2,0;0;0;0;0;0;-1303,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,47,208076,ENSMUSG00000035934,conserved gene but different region,9,37147150,37147210,61,*,61,11,0.803278689,1.156896552,0.180327869,9.04E-12,CpGisland,TRUE,U3,Pr-B
21378,cg07691419,-0.0000159,0.00000458,-3.473976239,0.000585822,loss,ns,-0.000000647,0.00000778,-0.083127249,0.93380401,neg,ns,-0.001479688,0.00228018,-0.648934712,0.516861032,neg,ns,0.28662621,0.0000214,0.0000784,0.273030027,0.785011928,pos,ns,0.924811508,Apoo-ps,Apoo-ps_Intron,13,107540718,107540767,107540766,107540767,50,+,CAAATATTCAAGCCCTCTGTGCATATATTTGTGTTTTGAAGCATTCAGCG,"Intron (Gm32004-204/Gm32004-204, intron 1 of 3)",13,107414144,107414729,586,2,Apoo-ps-201,-125989,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,5,621156,ENSMUSG00000049233,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22942,cg05730868,0.00000274,0.00000283,0.968092756,0.333752717,gain,ns,0.000000399,0.0000048,0.083075006,0.933845516,pos,ns,0.002255245,0.00140685,1.603045446,0.109942986,pos,ns,0.958832473,-0.0000101,0.0000484,-0.209535223,0.834168074,neg,ns,0.828470747,Mast2,Mast2_Exon,4,116309865,116309914,116309865,116309866,50,+,CGAATGGCCCGCAGGGTGAAGCCATACTTCTTGCCAGCTCGGTGGATGAT,"Exon (Mast2-217/Mast2, exon 22 of 26)",4,116306762,116371732,64971,2,Mast2-217,61818,Mast2-217;Mast2-216;Mast2-202;Mast2-201;Mast2-203;Mast2-204;Mast2-208;Mast2-209;Mast2-213;Mast2-206;Mast2-215,Mast2;Mast2;Mast2;Mast2;Mast2;Mast2;Mast2;Mast2;Mast2;Mast2;Mast2,0;0;0;0;0;0;-660;0;0;6162;7846,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,17776,ENSMUSG00000003810,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3988,cg19417761,-0.0000148,0.00000616,-2.400795328,0.016948485,loss,ns,-0.000000868,0.0000105,-0.082956866,0.933939377,neg,ns,-0.001613401,0.003066206,-0.526188204,0.599133687,neg,ns,0.222476261,-0.0000561,0.000105447,-0.53158766,0.595392322,neg,ns,0.912082818,Gm47750,Gm47750_Intron,12,26227692,26227741,26227692,26227693,50,+,CGAGGATGACAACTAGACAATGATTCTAATATGAAGAAATTTGCATACAT,"Intron (4930480M12Rik-201/4930480M12Rik-201, intron 2 of 2)",12,26150316,26150513,198,1,Gm47750-201,77376,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,2,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23259,cg22567787,-0.000000104,0.000000363,-0.28653831,0.774657261,loss,ns,-5.11E-08,0.000000617,-0.082836083,0.934035339,neg,ns,-0.000281481,0.000180779,-1.557044542,0.120480196,neg,ns,0.919084335,0.0000109,0.00000622,1.759684926,0.079447561,pos,ns,0.991628487,Eri3,Eri3_Intron,4,117634227,117634276,117634227,117634228,50,-,CGGAGCTTCATTGCCTATGCACGCGCCGTCCAGCCTGGCGGCATGATTAC,"Intron (Eri3-201/Eri3, intron 7 of 8)",4,117550365,117674297,123933,1,Eri3-201,83862,Eri3-201;Eri3-206;Eri3-203,Eri3;Eri3;Eri3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,82,97,140546,ENSMUSG00000033423,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16729,cg14024120,-0.00000895,0.00000608,-1.473231758,0.141703185,loss,ns,-0.000000855,0.0000103,-0.082770207,0.934087678,neg,ns,0.004121412,0.003024789,1.362545587,0.174014812,pos,ns,0.759413784,-0.000146081,0.000104022,-1.404320389,0.16122456,neg,ns,0.914231703,Lrba,Lrba_Exon,3,86327617,86327666,86327617,86327618,50,+,CGACCCTACTTCGAAATTCTCCCCAGTGCCCAGAGAGCATGGAGGTTCGC,"Exon (Lrba-202/Lrba, exon 21 of 51)",3,86224680,86746712,522033,1,Lrba-202,102937,Lrba-202;Lrba-204;Lrba-201;Lrba-208,Lrba;Lrba;Lrba;Lrba,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,17,45,80877,ENSMUSG00000028080,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15974,cg21563501,0.0000107,0.0000113,0.946424785,0.344669089,gain,ns,0.0000016,0.0000193,0.082759664,0.934096054,pos,ns,-0.006354396,0.005648118,-1.125046652,0.261439577,neg,ns,0.582628668,0.00015715,0.000194238,0.809058916,0.419101768,pos,ns,0.679621545,Gm12416,Gm12416_Intergenic_upstream,4,84078561,84078610,84078561,84078562,50,+,CGAATTGATTGCTGTAAGTGTTTTGACTGCACTTGCCTGCTTTGCATAAA,Distal Intergenic,4,84104895,84105902,1008,1,Gm12416-201,-26285,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,11,668010,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26039,cg09076315,-0.0000301,0.00000516,-5.837686731,1.33E-08,loss,yes,0.000000725,0.00000876,0.082746241,0.934106719,pos,ns,-0.005441967,0.002565992,-2.120804555,0.034731911,neg,ns,1.459271324,0.000119729,0.0000882,1.35678619,0.175836316,pos,ns,0.898669502,Kcnq1,Kcnq1_Intron,7,143340791,143340840,143340839,143340840,50,-,GCCTGGCCCATGGTGGAAATGCAAATCTAATTAGTCTGGCATTGAGCCCG,"Intron (Kcnq1-201/Kcnq1, intron 11 of 15)",7,143107254,143427042,319789,1,Kcnq1-201,233537,Kcnq1-201;Kcnq1-202,Kcnq1;Kcnq1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,9,16535,ENSMUSG00000009545,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18185,cg08974380,-0.0000168,0.00000479,-3.513875407,0.000507388,loss,ns,-0.000000673,0.00000814,-0.082713627,0.934132631,neg,ns,-0.002340254,0.002383868,-0.981704615,0.327010924,neg,ns,0.48543774,-0.000102337,0.000082,-1.24830005,0.212863162,neg,ns,0.945329748,Cacna1g,Cacna1g_Exon,11,94416647,94416696,94416647,94416648,50,+,CGCCCAGAGCTGCAAAGATGAAAAACAACAACATGAAGAGAAGTCCCAGG,"Exon (Cacna1g-202/Cacna1g, exon 31 of 36)",11,94408391,94474100,65710,2,Cacna1g-202,57404,Cacna1g-202;Cacna1g-203;Cacna1g-205;Cacna1g-206;Cacna1g-207;Cacna1g-208;Cacna1g-209;Cacna1g-210;Cacna1g-211;Cacna1g-201;Cacna1g-204;Cacna1g-213;Cacna1g-215;Cacna1g-214,Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g,0;0;0;0;0;0;0;0;0;0;0;-4968;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,18,12291,ENSMUSG00000020866,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
26238,cg05200606,0.00000504,0.00000301,1.676263758,0.094694692,gain,ns,-0.000000423,0.00000511,-0.082712787,0.934133299,neg,ns,0.002574905,0.001496758,1.720321436,0.086371954,pos,ns,1.063627254,-0.0000328,0.0000515,-0.637165667,0.524487205,neg,ns,0.085654208,Ccnd1,Ccnd1_Exon,7,144938033,144938082,144938081,144938082,50,+,ACAGGAAGCGGTCCAGGTAGTTCATGGCCAGCGGGAAGACCTCCTCCTCG,"Exon (Ccnd1-201/Ccnd1, exon 2 of 5)",7,144929931,144939869,9939,2,Ccnd1-201,1787,Ccnd1-201;Ccnd1-203;Ccnd1-202,Ccnd1;Ccnd1;Ccnd1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,12443,ENSMUSG00000070348,conserved gene and region,7,144937865,144938157,293,*,293,18,0.610921502,0.660902256,0.061433447,2.44E-10,CpGisland,TRUE,U3,Pr-B
13168,cg01765142,-0.00000596,0.00000279,-2.136621329,0.033411499,loss,ns,0.000000392,0.00000474,0.082707095,0.934137821,pos,ns,-0.001138486,0.001388777,-0.81977601,0.412973645,neg,ns,0.384077663,0.0000442,0.0000478,0.926189624,0.355067916,pos,ns,0.949259587,Gm11221,Gm11221_Intergenic_upstream,4,69618336,69618385,69618336,69618337,50,+,CGCTTGGGCTTAATGAGGTAAACCAGACCTCCGGTAATATCGCCTGTATA,Distal Intergenic,4,69691978,69692574,597,1,Gm11221-201,-73593,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,4,622491,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7601,cg11125461,-0.000158817,0.0000843,-1.884070594,0.060491062,loss,ns,0.0000118,0.000143205,0.082660498,0.934174843,pos,ns,0.171400968,0.041954353,4.085415627,0.0000561,pos,ns,4.251212827,-0.005056315,0.001442807,-3.50449944,0.000524882,neg,ns,0.504910807,Zbtb20,Zbtb20_Intron,16,43410464,43410513,43410464,43410465,50,+,CGCCCAGACGGAAGGAGAATGTGGACCAAAAGATTGCGACAATCGGGTAA,"Intron (Zbtb20-209/Zbtb20, intron 7 of 7)",16,42875881,43463175,587295,1,Zbtb20-209,534583,Zbtb20-209;Zbtb20-211;Zbtb20-217;Zbtb20-218;Zbtb20-204;Zbtb20-215;Zbtb20-201;Zbtb20-203;Zbtb20-214;Zbtb20-213;Zbtb20-219;Zbtb20-216,Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,98,56490,ENSMUSG00000022708,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17911,cg01757860,-0.000000273,0.00000139,-0.196013517,0.844728013,loss,ns,-0.000000195,0.00000237,-0.08233919,0.93443013,neg,ns,0.000859503,0.000693927,1.238606973,0.216428154,pos,ns,0.664686245,-0.0000275,0.0000239,-1.152860653,0.249855758,neg,ns,0.029623581,Nup54,Nup54_Exon,5,92434324,92434373,92434324,92434325,50,+,CGAAACCCCCAAAATTAAACCCACTGGCGGTGGAGTTGGCAGTCTCAAGC,Promoter (<=1kb),5,92415540,92435219,19680,2,Nup54-201,846,Nup54-201;Nup54-206;Nup54-202;Nup54-207;Nup54-205;Nup54-204,Nup54;Nup54;Nup54;Nup54;Nup54;Nup54,0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,269113,ENSMUSG00000034826,conserved gene and region,5,92434164,92434352,189,*,189,11,0.492063492,1.024137931,0.058201058,0.00000271,CpGisland,TRUE,NA,NRS
1646,cg14440112,0.0000581,0.00000827,7.028497907,1.33E-11,gain,yes,-0.00000116,0.000014,-0.082282133,0.934475463,neg,ns,0.007148812,0.004114846,1.737321866,0.083323566,pos,ns,1.079232152,-0.000196541,0.000141509,-1.388892737,0.165862347,neg,ns,0.055536251,Zfp521,Zfp521_fiveUTR,18,13972649,13972698,13972697,13972698,50,-,GTCAGCCTGCCTGCACTCACACACAGACAGAGGGGCATGATTAAAAGGCG,Promoter (<=1kb),18,13687013,13972787,285775,2,Zfp521-201,89,Zfp521-201;Zfp521-204;Zfp521-203;Zfp521-202,Zfp521;Zfp521;Zfp521;Zfp521,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,81,225207,ENSMUSG00000024420,conserved gene but different region,18,13972697,13972999,303,*,303,56,0.808580858,1.154285714,0.184818482,2.05E-60,CpGisland,TRUE,U2,Pr-W
16400,cg10810311,-0.00000569,0.00000265,-2.150348339,0.032300751,loss,ns,0.000000369,0.00000449,0.082179431,0.934557065,pos,ns,0.002378918,0.00131655,1.80693349,0.071742115,pos,ns,1.144225822,-0.00011293,0.0000453,-2.494256683,0.013142684,neg,ns,0.928277225,Ggnbp2,Ggnbp2_Exon,11,84833107,84833156,84833107,84833108,50,-,CGGTATTGTTCTCTATTGCTGTAGAAAGACTGGTTATTAGCCATAAATGA,"Exon (Ggnbp2-213/Ggnbp2, exon 14 of 14)",11,84832361,84870738,38378,2,Ggnbp2-213,37582,Dhrs11-201;Dhrs11-202;Ggnbp2-213;Ggnbp2-203;Ggnbp2-211;Ggnbp2-206;Ggnbp2-201;Ggnbp2-202;Ggnbp2-204;Ggnbp2-212;Ggnbp2-210,Dhrs11;Dhrs11;Ggnbp2;Ggnbp2;Ggnbp2;Ggnbp2;Ggnbp2;Ggnbp2;Ggnbp2;Ggnbp2;Ggnbp2,-4143;-4113;0;0;0;0;0;0;3312;0;4828,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,217039,ENSMUSG00000020530,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11270,cg25632522,0.00000647,0.00000533,1.215480636,0.225107682,gain,ns,0.000000741,0.00000905,0.081933805,0.934752227,pos,ns,0.019926712,0.002650706,7.517510335,6.05E-13,pos,yes,12.21823322,-0.000476154,0.0000912,-5.223419659,0.000000323,neg,yes,0.864625088,Mipol1,Mipol1_Intron,12,57292092,57292141,57292140,57292141,50,+,TTGTTGAGTCTGCTGACGAATACTAATAAATGCCTGCAACAATCCAGACG,"Intron (Mipol1-210/Mipol1, intron 1 of 3)",12,57230427,57308695,78269,1,Mipol1-210,61665,Mipol1-210;Mipol1-207;Mipol1-206;Mipol1-205;Mipol1-201;Mipol1-209;Mipol1-208;Mipol1-203,Mipol1;Mipol1;Mipol1;Mipol1;Mipol1;Mipol1;Mipol1;Mipol1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,7,73490,ENSMUSG00000047022,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16901,cg06129152,-0.0000127,0.00000995,-1.281018132,0.201144781,loss,ns,-0.00000138,0.0000169,-0.081738937,0.934907063,neg,ns,-0.010215141,0.004950729,-2.063360929,0.039910603,neg,ns,1.398911709,0.000277184,0.000170255,1.628049804,0.104530178,pos,ns,0.759415397,Gm18602,Gm18602_Intron,8,87214989,87215038,87215037,87215038,50,+,TGTACACGCAAAATTAACACAAATCAAAACTGCTGCTGTTCTTTGATCCG,"Intron (Gm27169-201/Gm27169-201, intron 1 of 4)",8,87051397,87052247,851,2,Gm18602-201,-162742,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,100417420,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21211,cg14199786,0.00000163,0.000003,0.543415094,0.58723458,gain,ns,-0.000000417,0.0000051,-0.08169765,0.934939869,neg,ns,0.000441595,0.001494731,0.295434359,0.767859869,pos,ns,0.11471803,-0.0000482,0.0000514,-0.93693888,0.349519344,neg,ns,0.916715315,Acot11,Acot11_Exon,4,106771411,106771460,106771459,106771460,50,+,GTGTGGCAGGGCAGCACCAGCTGGCTCATCTGCACCTCCGTGGGGTTCCG,"Exon (Acot11-202/Acot11, exon 2 of 16)",4,106744555,106799846,55292,2,Acot11-202,28386,Acot11-202;Acot11-201;Acot11-203;Acot11-207;Acot11-205;Acot11-206;Gm12745-201,Acot11;Acot11;Acot11;Acot11;Acot11;Acot11;Gm12745,0;0;0;0;0;0;-3356,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,3,329910,ENSMUSG00000034853,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27017,cg11741181,-0.00000912,0.00000569,-1.603922534,0.109749423,loss,ns,0.000000789,0.00000966,0.081665919,0.934965082,pos,ns,-0.003161008,0.002830716,-1.116681334,0.264995364,neg,ns,0.576761723,0.000164235,0.0000973,1.687085106,0.092592906,pos,ns,0.098794479,Rbm39,Rbm39_threeUTR,2,156178850,156178899,156178850,156178851,50,+,CGGTACAGCGATAAGTCACTCAATTACTACCTTATGATTGACAGTTCACA,3' UTR,2,156147239,156180238,33000,2,Rbm39-203,1339,Rbm39-203;Rbm39-217;Rbm39-215;Rbm39-201;Rbm39-225;Rbm39-223;Rbm39-204;Rbm39-216;Rbm39-213;Rbm39-214;Rbm39-218;Rbm39-219;Rbm39-210;Rbm39-224;Rbm39-212;Rbm39-202;Rbm39-208;Rbm39-222;Rbm39-205;Rbm39-211,Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,11,13,170791,ENSMUSG00000027620,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
6985,cg07679454,0.00000247,0.00000254,0.972441708,0.331589005,gain,ns,0.000000351,0.00000431,0.081490973,0.935104091,pos,ns,0.003864579,0.001262424,3.061238083,0.002397147,pos,ns,2.620305382,-0.000112584,0.0000434,-2.593226527,0.009958984,neg,ns,0.039342535,Cdk19,Cdk19_fiveUTR,10,40349588,40349637,40349636,40349637,50,+,CAGACAATGGATTATGATTTCAAGGCGAAGCTGGCGGCGGAGCGGGAGCG,5' UTR,10,40339564,40480868,141305,1,Cdk19-205,10024,Cdk19-205;Cdk19-201;Cdk19-202;Cdk19-204;Cdk19-203,Cdk19;Cdk19;Cdk19;Cdk19;Cdk19,0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,4,78334,ENSMUSG00000038481,conserved gene and region,10,40349613,40350160,548,*,548,66,0.708029197,1.003663004,0.120437956,3.79E-56,CpGisland,TRUE,U1,Pr-A
1669,cg07359023,-0.00000159,0.00000199,-0.80074907,0.423890191,loss,ns,-0.000000275,0.00000337,-0.081459725,0.935128921,neg,ns,-0.00076228,0.000988373,-0.771246775,0.441148127,neg,ns,0.35541556,0.0000516,0.000034,1.519245892,0.12971982,pos,ns,0.958188928,Arid4b,Arid4b_Exon,13,14170070,14170119,14170070,14170071,50,+,CGGTATGGACGAGGGAAAAATCAAAAAATGTATGAAGCTAGTATTAAAGA,"Exon (Arid4b-203/Arid4b, exon 17 of 24)",13,14063785,14199367,135583,1,Arid4b-204,106285,Arid4b-205;Arid4b-204;Arid4b-203;Arid4b-201;Arid4b-202;Arid4b-207,Arid4b;Arid4b;Arid4b;Arid4b;Arid4b;Arid4b,106286;0;0;0;106271;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,94246,ENSMUSG00000039219,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1242,cg09736035,0.000122632,0.0000102,12.05601156,1.04E-27,gain,yes,-0.00000141,0.0000173,-0.08143723,0.935146795,neg,ns,0.015665148,0.005062619,3.094277222,0.00215275,pos,ns,2.667006411,-0.000368342,0.000174103,-2.115654993,0.035171359,neg,ns,0.455449756,Bcor,Bcor_Intron,X,12126716,12126765,12126764,12126765,50,-,AATTTGAAACATCTGCCGAGCTGCTTTGGTCTGATTGCTAAAATATGCCG,"Intron (Bcor-201/Bcor, intron 1 of 13)",20,12036743,12160355,123613,2,Bcor-201,33590,Bcor-201;Bcor-207;Bcor-205;Bcor-208,Bcor;Bcor;Bcor;Bcor,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,56,74,71458,ENSMUSG00000040363,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
24512,cg07087324,-0.00000126,0.000000681,-1.845053508,0.065983435,loss,ns,9.42E-08,0.00000116,0.08135526,0.935211928,pos,ns,0.000512393,0.000339177,1.510695575,0.131884658,pos,ns,0.879805723,-0.0000254,0.0000117,-2.176292391,0.030288078,neg,ns,0.013427213,Gabpb1,Gabpb1_fiveUTR,2,126675326,126675375,126675374,126675375,50,+,TAACAGGGCCCTACACAGACCCGCACTGACCTGGAAAAGCTTCGGGAGCG,Promoter (<=1kb),2,126652326,126675339,23014,2,Gabpb1-208,0,Gabpb1-206;Gabpb1-205;Gabpb1-204;Gabpb1-201;Gabpb1-203;Gabpb1-202;Gabpb1-208;Gabpb1-207,Gabpb1;Gabpb1;Gabpb1;Gabpb1;Gabpb1;Gabpb1;Gabpb1;Gabpb1,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,7,12,14391,ENSMUSG00000027361,mapped to different genes,2,126674561,126675949,1389,*,1389,168,0.699064075,0.9905509,0.120950324,2.65E-142,CpGisland,TRUE,U1,Pr-A
6566,cg17901010,-0.00000681,0.0000042,-1.619814954,0.106288825,loss,ns,-0.000000581,0.00000714,-0.08132814,0.935233477,neg,ns,0.001746898,0.00209144,0.835260753,0.404214176,pos,ns,0.39338846,-0.000137321,0.0000719,-1.909244135,0.057153649,neg,ns,0.923905671,Zfp536,Zfp536_Intron,7,37743744,37743793,37743744,37743745,50,+,CGAACATTTCAAAGCTAATTGTAATGGTCTTTTAAGATCTGAATTCCTCA,"Intron (Zfp536-202/Zfp536, intron 1 of 6)",7,37479104,37769624,290521,2,Zfp536-202,25831,Zfp536-202;Zfp536-201;Zfp536-203;Zfp536-206;Zfp536-209;Zfp536-208;Zfp536-205;Zfp536-207,Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,73,112,243937,ENSMUSG00000043456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17801,cg22556822,-0.00000307,0.00000351,-0.875992083,0.381712597,loss,ns,0.000000485,0.00000596,0.081317926,0.935241594,pos,ns,-0.000739641,0.00174578,-0.423673623,0.672097664,neg,ns,0.172567614,-0.0000925,0.00006,-1.54078456,0.124389345,neg,ns,0.934312133,Gm48943,Gm48943_Intergenic_downstream,14,91776293,91776342,91776341,91776342,50,+,AATTGGTATTATGCACTCCCTGTGGCTTGTATCATTTAGTTGCTGAGCCG,Distal Intergenic,14,91676448,91730881,54434,1,Gm48943-201,99845,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15598,cg24971738,0.0000334,0.00000459,7.268328731,2.98E-12,gain,yes,0.000000634,0.0000078,0.08130494,0.935251912,pos,ns,0.007365075,0.002284082,3.224522483,0.001396401,pos,ns,2.854989983,-0.000137787,0.0000785,-1.754140065,0.0803946,neg,ns,0.030238022,Zfp804a,Zfp804a_Exon,2,82053838,82053887,82053886,82053887,50,-,ACACTTTCGCAACATCAAGGGAGTTTTCCGGGGCCCTCTCAGCAAGAACG,Promoter (<=1kb),2,82053222,82259879,206658,1,Zfp804a-201,616,Zfp804a-201,Zfp804a,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,9,241514,ENSMUSG00000070866,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
13832,cg01640606,0.00000858,0.00000101,8.452613265,1.13E-15,gain,yes,0.00000014,0.00000172,0.081270059,0.935279629,pos,ns,0.001213414,0.000505152,2.402073908,0.016890467,pos,ns,1.772358332,-0.0000045,0.0000174,-0.258883449,0.795896982,neg,ns,0.022051214,Six1,Six1_Intron,12,73050251,73050300,73050299,73050300,50,+,ATCACGTTTCGTTATCTTTAGTGGGAATCTGCAACGTGACACCGGATCCG,"Intron (Six1-203/Six1, intron 1 of 1)",12,73043531,73053887,10357,2,Six1-203,3587,Six1-201;Six1-203;Six1-202,Six1;Six1;Six1,0;0;-4960,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,18,20471,ENSMUSG00000051367,conserved gene and region,12,73050255,73050304,50,*,50,8,0.56,2.040816327,0.16,4.61E-08,CpGisland,TRUE,U13,Hc-P
4484,cg03896419,0.00000288,0.00000466,0.618334692,0.536808772,gain,ns,-0.000000643,0.00000791,-0.081217516,0.93532138,neg,ns,0.001087273,0.002318275,0.469000685,0.639398803,pos,ns,0.194228181,-0.000122179,0.0000797,-1.532496215,0.12641989,neg,ns,0.891632982,Ryr1,Ryr1_Exon,7,29074851,29074900,29074851,29074852,50,+,CGGATGGCCTCTTCGATGGCAGCCAGCAGCCCTGAGCCACCCTCACCCCG,"Exon (Ryr1-208/Ryr1, exon 45 of 109)",7,29003344,29125015,121672,2,Ryr1-208,50115,Ryr1-208;Ryr1-201;Ryr1-202;Ryr1-203,Ryr1;Ryr1;Ryr1;Ryr1,0;0;0;-2774,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,20190,ENSMUSG00000030592,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12969,cg13324763,-0.00000448,0.00000447,-1.00167261,0.317282963,loss,ns,0.000000616,0.0000076,0.081062315,0.935444705,pos,ns,-0.003749196,0.00222571,-1.684494587,0.093092594,neg,ns,1.03108487,0.0000815,0.0000765,1.064858266,0.287768772,pos,ns,0.920585036,Erbb4,Erbb4_Intron,1,68865465,68865514,68865465,68865466,50,+,CGGCAACCTTAGCATAATTAAGACAAGCCTGAGTGCTTGCCATGGTGCCA,"Intron (Erbb4-201/Erbb4, intron 1 of 27)",1,68032186,69107756,1075571,2,Erbb4-201,242242,Erbb4-201;Erbb4-202;Erbb4-205,Erbb4;Erbb4;Erbb4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,13,13869,ENSMUSG00000062209,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24297,cg11293950,0.00000236,0.00000433,0.544322508,0.586610862,gain,ns,-0.000000596,0.00000735,-0.081021644,0.935477023,neg,ns,-0.003506921,0.002154407,-1.627789179,0.104585479,neg,ns,0.980528609,0.000183223,0.0000741,2.472976899,0.013935242,pos,ns,0.907278535,Pou3f1,Pou3f1_Intergenic_upstream,4,124526783,124526832,124526783,124526784,50,+,CGGCGGGTTGATAGGTAAGTTTTAATCTGACAAGGCCAAAAAGTCTATTA,Distal Intergenic,4,124656807,124660655,3849,1,Pou3f1-201,-129975,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,24,85,18991,ENSMUSG00000090125,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11122,cg17911320,-0.000128853,0.000016,-8.072962457,1.53E-14,loss,yes,0.0000022,0.0000271,0.081010241,0.935486084,pos,ns,-0.003643667,0.007943958,-0.458671496,0.646791488,neg,ns,0.189235704,-0.000928983,0.000273192,-3.400477529,0.000760776,neg,ns,0.831847656,Gm13527,Gm13527_Intergenic_upstream,2,56662869,56662918,56662869,56662870,50,-,CGGTGTGAAAAGTACTGCCAAACGTGATCCTTAATTAAACTTTAATTAAG,Distal Intergenic,2,57079748,57080438,691,1,Gm13527-201,-416879,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,13,13,227920,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23639,cg18296442,0.0000165,0.0000117,1.405421805,0.160897259,gain,ns,0.00000161,0.0000199,0.08097134,0.935516995,pos,ns,0.006795606,0.005841635,1.163305411,0.245600252,pos,ns,0.609771192,-0.000556916,0.000200893,-2.772198023,0.005904697,neg,ns,0.279787741,Inhbb,Inhbb_Intron,1,119419150,119419199,119419150,119419151,50,+,CGGACCAGAAATATAACAGCCCCCGCTGTCATTTTGTGCCACCGGGACCA,"Intron (Inhbb-201/Inhbb, intron 1 of 1)",1,119415465,119422248,6784,2,Inhbb-201,3049,Inhbb-201,Inhbb,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,2,16324,ENSMUSG00000037035,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10366,cg23480730,0.0000163,0.00000443,3.691690049,0.00026314,gain,ns,-0.000000609,0.00000752,-0.08094933,0.935534485,neg,ns,0.001032248,0.002203676,0.468420833,0.639812865,pos,ns,0.193947031,-0.0000773,0.0000758,-1.019839602,0.308599766,neg,ns,0.080402511,Npas3,Npas3_Promoter,12,53246545,53246594,53246545,53246546,50,+,CGAAGCAGTTTCATATCTCCTGGTATTATCTGCCGTCCAAAGCATTTTCT,Promoter (1-2kb),12,53248157,54069532,821376,1,Npas3-204,-1563,Npas3-204;Npas3-201,Npas3;Npas3,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,103,27386,ENSMUSG00000021010,conserved gene and region,12,53246436,53246640,205,*,205,13,0.517073171,0.950089127,0.063414634,0.000000089,CpGisland,TRUE,U13,Hc-P
20584,cg20453574,0.000000622,0.00000136,0.455917725,0.648768353,gain,ns,0.000000187,0.00000232,0.080942534,0.935539885,pos,ns,0.002058552,0.000678586,3.033590959,0.002621001,pos,ns,2.581532751,-0.0000345,0.0000233,-1.479857959,0.139926668,neg,ns,0.962691935,Srek1,Srek1_Exon,13,103766959,103767008,103766959,103766960,50,+,CGGCAGGTTTAGTGGCATGGCAAACAATGCCTAACTCAGGCAAGTGTAAC,"Exon (Srek1-208/Srek1, exon 3 of 3)",13,103741612,103774608,32997,2,Srek1-201,7600,Srek1-204;Srek1-201;Srek1-210;Srek1-205;Srek1-209;Srek1-206;Srek1-202;Srek1-208,Srek1;Srek1;Srek1;Srek1;Srek1;Srek1;Srek1;Srek1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,10,218543,ENSMUSG00000032621,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20183,cg05568710,-0.00000913,0.00000465,-1.964112806,0.050410244,loss,ns,-0.000000639,0.00000789,-0.080923481,0.935555025,neg,ns,-0.001352488,0.002312829,-0.584776379,0.559123449,neg,ns,0.252492294,-0.000129788,0.0000795,-1.631776096,0.103742053,neg,ns,0.829328798,Olfr571,Olfr571_Exon,7,102909465,102909514,102909465,102909466,50,-,CGAGCAAGACAGAGGACTCCATGACAGAAAAGACATGGATAAAAACCATC,"Exon (Olfr571-203/Olfr571, exon 2 of 2)",7,102905090,102917536,12447,2,Olfr571-203,8022,Olfr571-203;Olfr571-202;Olfr571-201,Olfr571;Olfr571;Olfr571,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,259089,ENSMUSG00000043310,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10256,cg03664125,0.00000392,0.00000431,0.909628305,0.363725244,gain,ns,0.000000592,0.00000732,0.080916053,0.935560928,pos,ns,0.00057829,0.002143925,0.269734391,0.787544062,pos,ns,0.103725139,-0.0000983,0.0000737,-1.333638814,0.183301305,neg,ns,0.937134029,Kcnh8,Kcnh8_Intron,17,52308541,52308590,52308541,52308542,50,+,CGATGACTCAAGTGTGTTTTTACAGTGTCAGTAATTTTTATGTTTAAAAA,"Intron (Gm41600-201/Gm41600-201, intron 1 of 2)",17,52602709,52979194,376486,1,Kcnh8-201,-294119,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,8,211468,ENSMUSG00000035580,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23867,cg18358068,-0.0000399,0.00000937,-4.257400283,0.0000274,loss,ns,-0.00000129,0.0000159,-0.080907658,0.935567598,neg,ns,-0.012646304,0.004662856,-2.712136915,0.007058263,neg,ns,2.151302143,0.000167835,0.000160355,1.046642673,0.296079792,pos,ns,0.79266409,En1,En1_Intergenic_downstream,1,120692987,120693036,120693035,120693036,50,-,AAGTCAAATTTCTATACCACTTTTGTATTATCTCCCATCAGAAGAGAACG,Distal Intergenic,1,120602418,120607992,5575,1,En1-201,90618,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,36,13798,ENSMUSG00000058665,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26040,cg21183610,-0.0000396,0.00000629,-6.297196336,1.04E-09,loss,yes,0.000000864,0.0000107,0.080876942,0.935592006,pos,ns,-0.005251572,0.003131152,-1.677201396,0.094511072,neg,ns,1.024517312,0.0000185,0.00010768,0.171662734,0.863814688,pos,ns,0.91585529,Kcnq1,Kcnq1_Intron,7,143340955,143341004,143341003,143341004,50,+,GGGACTGTGCAAAGGACATTAATTACTTTAATGGGACTTATTTTGCTTCG,"Intron (Kcnq1-201/Kcnq1, intron 11 of 15)",7,143107254,143427042,319789,1,Kcnq1-201,233701,Kcnq1-201;Kcnq1-202,Kcnq1;Kcnq1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,9,16535,ENSMUSG00000009545,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22658,cg19756039,-0.0000619,0.0000129,-4.818723615,0.00000227,loss,ns,-0.00000176,0.0000218,-0.080784324,0.935665604,neg,ns,-0.015705709,0.0063964,-2.455398119,0.01462164,neg,ns,1.835003928,-0.0000484,0.000219972,-0.220037502,0.825986776,neg,ns,0.778913184,Maf,Maf_Intergenic_downstream,8,115632807,115632856,115632855,115632856,50,-,ATATGCCATTAGTGGCCACAGCACGATTCTGAAAATATACCTTCCTTACG,Distal Intergenic,8,115682942,115707096,24155,2,Maf-201,74289,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,23,17132,ENSMUSG00000055435,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3029,cg06222302,0.0000711,0.00000868,8.190802672,6.87E-15,gain,yes,0.00000119,0.0000148,0.080474403,0.935911881,pos,ns,0.018951729,0.004321969,4.384975197,0.0000159,pos,ns,4.798352685,-0.000243734,0.000148632,-1.639846119,0.102051479,neg,ns,0.182224489,Lrmda,Lrmda_Intron,14,22440664,22440713,22440664,22440665,50,-,CGATTATTAGTGACAGCTTGTAAGTGAGAGGAGCCTTATCTCTCCAGAGA,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,420952,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206;Lrmda-202,Lrmda;Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3574,cg18586192,-0.0000022,0.00000693,-0.318054559,0.7506577,loss,ns,-0.000000946,0.0000118,-0.080362422,0.936000868,neg,ns,0.000495413,0.003449871,0.143603242,0.885907082,pos,ns,0.052611826,-0.0000174,0.000118641,-0.146356504,0.883735089,neg,ns,0.85250829,Grhl1,Grhl1_Exon,12,24582898,24582947,24582898,24582899,50,+,CGGATCTCAGTCTGCGGATGCCTGGCATGAATTCAGAGGACTATGTTTTT,"Exon (Grhl1-202/Grhl1, exon 5 of 16)",12,24572283,24617388,45106,1,Grhl1-202,10615,Grhl1-202;Grhl1-203;Grhl1-204;Grhl1-201,Grhl1;Grhl1;Grhl1;Grhl1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,195733,ENSMUSG00000020656,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12369,cg23136264,0.0000457,0.0000058,7.887967098,5.31E-14,gain,yes,-0.000000789,0.00000985,-0.080160673,0.936161192,neg,ns,-0.005621805,0.002884313,-1.949096375,0.052185613,neg,ns,1.282449208,0.0000823,0.0000992,0.82924024,0.40760653,pos,ns,0.843832309,Klf7,Klf7_Exon,1,64042338,64042387,64042386,64042387,50,+,GGCTTTGCACCTGTGTGTTTCCTGTAGTGCCTCGTGAGCTCATCGCTTCG,"Exon (Klf7-202/Klf7, exon 3 of 4)",1,64029447,64121491,92045,2,Klf7-202,79104,Klf7-202;Klf7-201,Klf7;Klf7,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,21,93691,ENSMUSG00000025959,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10969,cg22183370,-0.0000042,0.00000156,-2.688961834,0.007555215,loss,ns,-0.000000212,0.00000265,-0.080032732,0.936262863,neg,ns,0.000250913,0.000776671,0.323062645,0.746865603,pos,ns,0.126757542,-0.00000378,0.0000267,-0.141533105,0.88754074,neg,ns,0.960945789,Tcf7l2,Tcf7l2_threeUTR,19,55931449,55931498,55931449,55931450,50,-,CGTTCGCTACATACAAGGTGAAGGCAGCTGCCTCAGCCCACCCTCTTCAG,3' UTR,19,55741820,55933229,191410,1,Tcf7l2-213,189629,Tcf7l2-213;Tcf7l2-201;Tcf7l2-211;Tcf7l2-212;Tcf7l2-222;Tcf7l2-215;Tcf7l2-202;Tcf7l2-209;Tcf7l2-210;Tcf7l2-203,Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2;Tcf7l2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,7,88,21416,ENSMUSG00000024985,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22654,cg14860886,-0.000077,0.0000107,-7.184615953,5.04E-12,loss,yes,-0.00000146,0.0000182,-0.080003036,0.936286463,neg,ns,-0.000543309,0.005334265,-0.101852585,0.918939534,neg,ns,0.036713064,-0.000334943,0.000183445,-1.825850119,0.068834709,neg,ns,0.763486342,Sox6,Sox6_Intron,7,115625003,115625052,115625003,115625004,50,-,CGCTCAAATGTCATGTGCACACCCAATGACGGGCAAGAATAATTATGAAA,"Intron (Sox6-210/Sox6, intron 7 of 15)",7,115470872,116031047,560176,2,Sox6-210,405995,Sox6-210;Sox6-201;Sox6-202;Sox6-204;Sox6-205;Sox6-203;Sox6-212;Sox6-206;Sox6-209;Sox6-214;Sox6-207;Sox6-213,Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,37,57,20679,ENSMUSG00000051910,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23903,cg26252870,-0.0000109,0.00000213,-5.123639124,0.000000528,loss,yes,0.000000289,0.00000362,0.079853143,0.936405582,pos,ns,-0.00074885,0.001060792,-0.705934876,0.480758805,neg,ns,0.318072753,0.0000146,0.0000365,0.400467978,0.689087706,pos,ns,0.964718998,Mical3,Mical3_Exon,6,121009812,121009861,121009860,121009861,50,-,CTTTCCTTTGAAGCTGATTGGCTATCTGCTCAGCCAATGAGCTCACTCCG,"Exon (Mical3-219/Mical3, exon 9 of 11)",6,120931722,121081609,149888,2,Mical3-216,71748,Mical3-216;Mical3-221;Mical3-222;Mical3-223;Mical3-211;Mical3-219;Mical3-209;Mical3-201;Mical3-215,Mical3;Mical3;Mical3;Mical3;Mical3;Mical3;Mical3;Mical3;Mical3,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,5,194401,ENSMUSG00000051586,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9334,cg17696987,-0.0000354,0.000011,-3.226587108,0.001386693,loss,ns,0.00000148,0.0000186,0.07958902,0.936615481,pos,ns,-0.006162374,0.005456708,-1.12932091,0.259635598,neg,ns,0.585635762,-0.000288636,0.000187656,-1.538112738,0.125041098,neg,ns,0.610900912,Slit2,Slit2_Exon,5,48223954,48224003,48223954,48223955,50,-,CGAGATTTTCTGTTGTGCTTGATCTAACCATGTGGTTGCGAGGTATGAGT,"Exon (Mir218-1-201/Mir218-1-201, exon 1 of 1)",5,47983138,48307733,324596,1,Slit2-208,240816,Slit2-208;Slit2-201;Slit2-202;Slit2-216;Slit2-217;Slit2-209;Slit2-218;Slit2-206,Slit2;Slit2;Slit2;Slit2;Slit2;Slit2;Slit2;Slit2,0;0;0;0;0;41852;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,11,20563,ENSMUSG00000031558,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9577,cg21274598,0.000046,0.00000736,6.245355917,1.39E-09,gain,yes,-0.000000994,0.0000125,-0.079470638,0.936709561,neg,ns,0.011266706,0.003662838,3.075949925,0.002285328,pos,ns,2.641051385,-0.000167424,0.000125965,-1.329131503,0.184781958,neg,ns,0.027753542,Foxg1,Foxg1_Exon,12,49385419,49385468,49385419,49385420,50,-,CGCGCCAGCAGCACTTTGAGTTACAACGGCACCACGTCGGCCTACCCCAG,"Exon (Foxg1-204/Foxg1, exon 1 of 1)",12,49382883,49386855,3973,1,Foxg1-204,2536,Foxg1-202;Foxg1-203;Foxg1-204;Foxg1-201;Gm43517-201,Foxg1;Foxg1;Foxg1;Foxg1;Gm43517,0;2619;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,27,15228,ENSMUSG00000020950,conserved gene and region,12,49385116,49385808,693,*,693,72,0.670995671,0.980968858,0.103896104,4.68E-56,CpGisland,TRUE,U13,Hc-P
13371,cg00154486,-0.0000406,0.0000164,-2.477065102,0.013779767,loss,ns,-0.00000221,0.0000278,-0.079458179,0.936719462,neg,ns,-0.023043322,0.008158581,-2.824427862,0.0050434,neg,ns,2.297276595,0.000590872,0.000280573,2.105948905,0.036012622,pos,ns,0.688668014,Nr2f2,Nr2f2_Intergenic_downstream,7,70348846,70348895,70348846,70348847,50,-,CGTGGCTGCAATTGAAAAGAGGAGGGCCCGCAACACTCCTGAAATAACAC,Distal Intergenic,7,70353074,70355237,2164,2,Nr2f2-203,6391,Nr2f2-201;Nr2f2-203,Nr2f2;Nr2f2,0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,19,69,11819,ENSMUSG00000030551,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10778,cg03498321,-0.00000477,0.00000171,-2.787674754,0.005636532,loss,ns,0.000000231,0.00000291,0.079304998,0.936841199,pos,ns,-0.001263636,0.000852174,-1.482838386,0.139133237,neg,ns,0.856569111,0.0000772,0.0000293,2.634546237,0.008848114,pos,ns,0.958992227,Vti1a,Vti1a_Intron,19,55384521,55384570,55384521,55384522,50,+,CGGTATCATTTCATATAGCCCTGGCAGAGCAGATCATTACCAGGCACAAA,"Intron (Vti1a-206/Vti1a, intron 4 of 7)",19,55316295,55577001,260707,1,Vti1a-206,68226,Vti1a-206;Vti1a-205;Vti1a-202;Vti1a-201;Vti1a-203,Vti1a;Vti1a;Vti1a;Vti1a;Vti1a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,32,53611,ENSMUSG00000024983,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17244,cg26249364,0.0000291,0.00000451,6.46202294,4.00E-10,gain,yes,-0.000000607,0.00000765,-0.079252186,0.936883171,neg,ns,0.000867853,0.002242583,0.386988071,0.699030564,pos,ns,0.155503835,0.0000936,0.0000771,1.21409619,0.225635092,pos,ns,0.050429142,Nog,Nog_Exon,11,89301476,89301525,89301476,89301477,50,+,CGCTTACTGAAGCAGCTGCCCACCTTCACGTAGCGCGGCCAAAAGCGGCT,Promoter (<=1kb),11,89300638,89302332,1695,2,Nog-201,807,Nog-201,Nog,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,36,18121,ENSMUSG00000048616,conserved gene and region,11,89301459,89301554,96,*,96,8,0.635416667,0.827586207,0.083333333,0.00000859,CpGisland,TRUE,NA,NRS
20655,cg14437289,0.0000878,0.0000205,4.280418031,0.0000249,gain,ns,0.00000276,0.0000349,0.079228923,0.936901658,pos,ns,0.080396804,0.010210564,7.873885015,5.83E-14,pos,yes,13.23445556,-0.001419141,0.00035114,-4.041518381,0.000067,neg,ns,0.70808201,Adamts6,Adamts6_threeUTR,13,104369618,104369667,104369666,104369667,50,-,AGATGGTGTTTACCAACTCCCAATATTTTTTTTCAGATTTCTTAAACTCG,3' UTR,13,104287835,104496695,208861,1,Adamts6-207,81783,Adamts6-207;Adamts6-202;Adamts6-201;Adamts6-206;Adamts6-203;Adamts6-204;Adamts6-205,Adamts6;Adamts6;Adamts6;Adamts6;Adamts6;Adamts6;Adamts6,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,19,31,108154,ENSMUSG00000046169,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15342,cg20118823,-0.0000166,0.0000052,-3.197944643,0.001527116,loss,ns,0.000000699,0.00000883,0.079175777,0.936943896,pos,ns,-0.002069678,0.002587807,-0.799780673,0.424450299,neg,ns,0.372173156,-0.000121106,0.000089,-1.360825101,0.174557454,neg,ns,0.853042535,Tcf3,Tcf3_Exon,10,80410400,80410449,80410400,80410401,50,-,CGCACCTGCTGCTCCAGCCCCAGGATGACCTGCACGGCCTGCTGCAGGAT,"Exon (Tcf3-208/Tcf3, exon 18 of 19)",10,80409514,80433637,24124,2,Tcf3-208,23188,Tcf3-208;Tcf3-209;Tcf3-206;Tcf3-207;Tcf3-201;Tcf3-210;Tcf3-205;Tcf3-202;Tcf3-204;Tcf3-214;Tcf3-203;Tcf3-212;Tcf3-211;Uqcr11-202;Uqcr11-201;Uqcr11-203,Tcf3;Tcf3;Tcf3;Tcf3;Tcf3;Tcf3;Tcf3;Tcf3;Tcf3;Tcf3;Tcf3;Tcf3;Tcf3;Uqcr11;Uqcr11;Uqcr11,0;0;0;0;0;0;0;0;0;0;0;0;5839;-3634;-3570;-3605,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,21423,ENSMUSG00000020167,conserved gene but different region,10,80410043,80410578,536,*,536,33,0.664179105,0.559127549,0.061567164,1.85E-18,CpGisland,TRUE,U10,Tr-S
14938,cg02864264,0.0000354,0.00000721,4.916892118,0.00000143,gain,yes,-0.000000969,0.0000122,-0.079113777,0.936993169,neg,ns,0.008371097,0.0035882,2.332951788,0.02029017,pos,ns,1.692714321,-0.0000669,0.000123398,-0.54181546,0.588334851,neg,ns,0.166260052,Nr2f1,Nr2f1_Intergenic_downstream,13,78185584,78185633,78185584,78185585,50,-,CGACAGAGGTAAATGGGTCTTTAACTCATTTAGGGATACAACTCTTTGGC,Distal Intergenic,13,78189872,78190443,572,2,Nr2f1-204,4859,Nr2f1-201;Nr2f1-205;Nr2f1-203;Nr2f1-202;Nr2f1-204,Nr2f1;Nr2f1;Nr2f1;Nr2f1;Nr2f1,0;0;0;0;4810,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,55,13865,ENSMUSG00000069171,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
15904,cg04278944,-0.0000237,0.00000563,-4.202423433,0.0000346,loss,ns,-0.000000757,0.00000957,-0.079083952,0.937016873,neg,ns,-0.008159246,0.0028043,-2.909548625,0.003881324,neg,ns,2.411020059,0.0000353,0.0000964,0.366289015,0.714399281,pos,ns,0.881078376,Gm11434,Gm11434_Intergenic_downstream,11,83817314,83817363,83817314,83817315,50,-,CGGCTCGTTCTAATCAGAAGGAAGCCATGCAGATAATTGCCTGAATTTTT,Distal Intergenic,11,83800464,83801092,629,1,Gm11434-201,16899,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,676191,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16532,cg07895731,0.0000167,0.00000326,5.131669752,0.000000508,gain,yes,-0.000000438,0.00000554,-0.079082777,0.937017807,neg,ns,0.000233955,0.00162162,0.144272188,0.885379285,pos,ns,0.052870643,-0.0000463,0.0000558,-0.829861006,0.407255963,neg,ns,0.919498564,Bcas3,Bcas3_Intron,11,85392592,85392641,85392640,85392641,50,+,AACAAATCATTCTTTGTTCTCCTTATTGTGCCTCCAAACTGGTACGTCCG,"Intron (Bcas3-204/Bcas3, intron 6 of 15)",11,85353167,85510991,157825,1,Bcas3-204,39425,Bcas3-204;Bcas3-205;Bcas3-206;Bcas3-201;Bcas3-202,Bcas3;Bcas3;Bcas3;Bcas3;Bcas3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,24,192197,ENSMUSG00000059439,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13834,cg18633980,0.0000424,0.00000483,8.782799616,1.10E-16,gain,yes,0.000000649,0.00000821,0.079041905,0.937050289,pos,ns,0.008886896,0.002404639,3.695729584,0.000259165,pos,ns,3.586423269,-0.000205961,0.0000827,-2.490603746,0.013275821,neg,ns,0.131550062,Six1,Six1_Intron,12,73052076,73052125,73052076,73052077,50,+,CGGTACTGCTGGTCTCTAATCAATCCTAATGCGATGGCAATTGGAGTCCC,"Intron (Six1-203/Six1, intron 1 of 1)",12,73043531,73053887,10357,2,Six1-203,1762,Six1-201;Six1-203,Six1;Six1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,18,20471,ENSMUSG00000051367,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
1121,cg24067003,-0.0000206,0.00000773,-2.65950722,0.008232218,loss,ns,0.00000104,0.0000131,0.079025128,0.937063623,pos,ns,-0.005860739,0.003849165,-1.522600188,0.128878162,neg,ns,0.889820665,0.0000538,0.000132372,0.406546153,0.684621875,pos,ns,0.61233221,Ikzf1,Ikzf1_Intron,11,11699685,11699734,11699685,11699686,50,+,CGTTTTTTGATTGCTGATTGTACGCGTGTCACCAAGCTGACTCAAGGTTC,"Intron (Ikzf1-206/Ikzf1, intron 1 of 2)",11,11685003,11707800,22798,1,Ikzf1-206,14682,Ikzf1-206;Ikzf1-205;Ikzf1-203;Ikzf1-204;Ikzf1-202;Ikzf1-201,Ikzf1;Ikzf1;Ikzf1;Ikzf1;Ikzf1;Ikzf1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,15,22778,ENSMUSG00000018654,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26799,cg14778330,0.0000267,0.00000188,14.1928698,1.43E-35,gain,yes,-0.000000252,0.00000319,-0.079020814,0.937067051,neg,ns,-0.000624919,0.000935011,-0.66835406,0.504404944,neg,ns,0.297220665,0.0000554,0.0000322,1.723190955,0.085851155,pos,ns,0.060302588,Sox12,Sox12_threeUTR,2,152396680,152396729,152396680,152396681,50,+,CGAGGGGCCCCAATACCTGATTCCTGTATGTAAACAGCTGGTTTGGGGGC,3' UTR,2,152393611,152398063,4453,2,Sox12-202,1334,Sox12-202;Sox12-201,Sox12;Sox12,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,7,7,20667,ENSMUSG00000051817,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
26756,cg07219448,-0.00000023,0.0000013,-0.177122598,0.85952776,loss,ns,-0.000000174,0.00000221,-0.079015787,0.937071046,neg,ns,0.000946161,0.000646414,1.463708498,0.144286849,pos,ns,0.840773252,-0.000025,0.0000222,-1.12323801,0.262205541,neg,ns,0.036935269,Scrt2,Scrt2_Promoter,2,152080865,152080914,152080913,152080914,50,-,ATGTGTCAAAACCACCACCCCCCGGCAGCAGGAAAATTAATTACTGGACG,Promoter (<=1kb),2,152081529,152095802,14274,1,Scrt2-201,-664,Scrt2-201,Scrt2,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,10,545474,ENSMUSG00000060257,conserved gene and region,2,152080778,152081001,224,*,224,15,0.611607143,0.749665328,0.066964286,3.20E-09,CpGisland,TRUE,U13,Hc-P
6827,cg09171355,0.00000785,0.00000181,4.341320677,0.0000192,gain,ns,0.000000242,0.00000307,0.078917677,0.93714902,pos,ns,-0.002670227,0.000900065,-2.966703168,0.003244248,neg,ns,2.488885968,0.000135958,0.000031,4.392372206,0.0000154,pos,ns,0.045068313,Spry4,Spry4_Intron,18,38631677,38631726,38631677,38631678,50,+,CGGAGCCTCACAAAAGAACAGGATGTTGTTGATTTGTCACCAAACCACAG,"Intron (9630014M24Rik-203/9630014M24Rik-203, intron 2 of 2)",18,38586247,38601415,15169,2,Spry4-201,-30262,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,4,24066,ENSMUSG00000024427,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
4054,cg12958745,0.0000883,0.0000111,7.925848503,4.12E-14,gain,yes,-0.00000149,0.0000189,-0.078846899,0.937205271,neg,ns,0.018704865,0.005544545,3.373561616,0.000836239,pos,ns,3.077669531,-0.000153721,0.000190676,-0.806188834,0.420751983,neg,ns,0.563697816,Gm45647,Gm45647_Intergenic_upstream,8,26672935,26672984,26672983,26672984,50,+,AGTCCACATTTGACAGGAAAATTAAGCCTATCAATCACTTAACGAGCTCG,Distal Intergenic,8,26780315,26780509,195,1,Gm45647-201,-107331,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,46,62,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21367,cg27368398,-0.0000265,0.00000986,-2.687249561,0.007593154,loss,ns,-0.00000132,0.0000167,-0.078838832,0.937211682,neg,ns,-0.013697714,0.004905287,-2.792438913,0.005556234,neg,ns,2.25521946,0.000565527,0.000168692,3.352415218,0.000900359,pos,ns,0.823427321,Glis1,Glis1_Intron,4,107502490,107502539,107502490,107502491,50,-,CGGAAGGTTTAATTGTTGCAAATGGAATCCGTGTTCTACAGAAGTCCAAT,"Intron (Glis1-205/Glis1, intron 2 of 2)",4,107434617,107563900,129284,1,Glis1-205,67873,Glis1-205;Glis1-201;Glis1-202,Glis1;Glis1;Glis1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,11,230587,ENSMUSG00000034762,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25701,cg04750593,-0.00000201,0.000000884,-2.270127445,0.023886073,loss,ns,-0.000000118,0.0000015,-0.078762197,0.937272589,neg,ns,-0.000155107,0.000440221,-0.352337847,0.724824321,neg,ns,0.139767243,0.0000111,0.0000151,0.735739145,0.462445766,pos,ns,0.02494346,Metap1,Metap1_Exon,3,138489273,138489322,138489273,138489274,50,-,CGAGCCCTGGATGCCCAGCTTGATGCAAGTGGGACACTGGAGCTTGGCCT,Promoter (<=1kb),3,138458956,138489515,30560,2,Metap1-201,193,Metap1-201;Metap1-203;Metap1-204,Metap1;Metap1;Metap1,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,75624,ENSMUSG00000005813,conserved gene and region,3,138488909,138489274,366,*,366,49,0.770491803,0.902112676,0.133879781,2.10E-44,CpGisland,TRUE,U1,Pr-A
569,cg11172629,0.00000916,0.0000179,0.510527115,0.610045561,gain,ns,0.0000024,0.0000305,0.078732177,0.937296448,pos,ns,0.001503036,0.008929932,0.16831437,0.866445729,pos,ns,0.062258635,-0.000327261,0.0003071,-1.065651963,0.287410272,neg,ns,0.865352512,Celf2,Celf2_Exon,2,6884852,6884901,6884900,6884901,50,+,CTTAAAAGCAGCTCTTCATTTCTCATAGTAACAGCGGATTTGGGACAGCG,Promoter (<=1kb),2,6620239,6884892,264654,2,Celf2-219,0,Celf2-201;Celf2-204;Celf2-214;Celf2-206;Celf2-226;Celf2-223;Celf2-221;Celf2-225;Celf2-217;Celf2-210;Celf2-209;Celf2-219;Celf2-218;Celf2-203,Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,24,14007,ENSMUSG00000002107,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7118,cg22930716,0.00000243,0.00000314,0.771095918,0.441237401,gain,ns,0.00000042,0.00000534,0.07867452,0.937342271,pos,ns,0.003613029,0.001565299,2.308204067,0.021645726,pos,ns,1.664627843,-0.000101771,0.0000538,-1.890589833,0.059611562,neg,ns,0.930740273,Zfpm2,Zfpm2_Intron,15,41064283,41064332,41064331,41064332,50,+,TGCTAAACCCGTGTGATCAATAGAGAGACAGATGTCGGGTGCAGATGGCG,"Intron (Zfpm2-201/Zfpm2, intron 5 of 7)",15,40655035,41104592,449558,1,Zfpm2-201,409248,Zfpm2-201;Zfpm2-203,Zfpm2;Zfpm2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,41,22762,ENSMUSG00000022306,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22388,cg13111173,-0.0000169,0.00000414,-4.090307263,0.000055,loss,ns,0.000000553,0.00000704,0.078622646,0.9373835,pos,ns,-0.0024705,0.002061287,-1.198522704,0.231629016,neg,ns,0.635207037,-0.0000818,0.0000709,-1.154585346,0.249149521,neg,ns,0.916039697,Sdk2,Sdk2_Intron,11,113956968,113957017,113956968,113956969,50,-,CGTGTAACAAAGACTGCCGAGCAGAAAATTGGAGTTCAATTTGCCGTCCA,"Intron (Sdk2-201/Sdk2, intron 1 of 44)",11,113776374,114066218,289845,2,Sdk2-201,109201,Sdk2-201;Sdk2-203;Sdk2-205;Sdk2-204,Sdk2;Sdk2;Sdk2;Sdk2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,11,237979,ENSMUSG00000041592,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13658,cg04510523,0.0000701,0.0000109,6.432942019,4.74E-10,gain,yes,0.00000145,0.0000185,0.078605612,0.937397038,pos,ns,0.016429867,0.005420704,3.03094694,0.002643386,pos,ns,2.577839402,-0.000200317,0.000186418,-1.074561599,0.283406715,neg,ns,0.487666311,Gm47812,Gm47812_Exon,13,71785248,71785297,71785296,71785297,50,-,TGTTTAAAGTTGCACAGTGATCTTTAAATCTCAAAAAGAACACCTTGTCG,"Exon (Gm40999-202/Gm40999-202, exon 1 of 1)",13,71625028,71625143,116,1,Gm47812-201,160269,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,5,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6669,cg23856718,0.0000344,0.00000452,7.612005181,3.28E-13,gain,yes,0.000000602,0.00000767,0.078538336,0.937450507,pos,ns,0.009760703,0.002247315,4.343272495,0.000019,pos,ns,4.7203283,-0.000347329,0.0000773,-4.49413758,0.00000988,neg,ns,0.914102662,Uri1,Uri1_Intron,7,37970881,37970930,37970881,37970882,50,+,CGGTTGCCATGGCAAATCTGAGCCCTTAAGTCATATATCTTTGATTGCAG,"Intron (Uri1-201/Uri1, intron 4 of 10)",7,37959992,38019542,59551,2,Uri1-201,48612,Uri1-201;Uri1-204;Uri1-206;Uri1-207;Uri1-205,Uri1;Uri1;Uri1;Uri1;Uri1,0;-1253;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,27,19777,ENSMUSG00000030421,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4905,cg09784081,-0.00000595,0.00000156,-3.814051992,0.000164968,loss,ns,0.000000208,0.00000265,0.078537469,0.937451196,pos,ns,0.001098861,0.000777059,1.414127947,0.158327845,pos,ns,0.8004427,-0.0000383,0.0000267,-1.433432826,0.152741968,neg,ns,0.037518848,Gm13835,Gm13835_Intron,6,31217592,31217641,31217640,31217641,50,-,TCCTCCTCCTCCTCTTCTTCTGTTTACCTCAAGTTTGAATTTTATCTGCG,"Intron (Lncpint-204/Lncpint-204, intron 1 of 3)",6,31141979,31142663,685,2,Gm13835-201,-74978,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,4,100038973,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
17282,cg16739697,-0.0000179,0.00000894,-2.004559771,0.045879509,loss,ns,-0.00000119,0.0000152,-0.078266161,0.937666829,neg,ns,0.015231142,0.004450311,3.42248933,0.000703838,pos,ns,3.15252737,-0.000596929,0.000153046,-3.90032514,0.000117823,neg,ns,0.768785725,Fzd4,Fzd4_Exon,7,89407049,89407098,89407097,89407098,50,+,TTATGTGCCAATGTGCACAGAGAAGATCAACATCCCCATTGGCCCATGCG,"Exon (Fzd4-201/Fzd4, exon 2 of 2)",7,89404355,89413134,8780,1,Fzd4-201,2694,Fzd4-201;Tmem135-203,Fzd4;Tmem135,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,14366,ENSMUSG00000049791,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14212,cg04255022,-0.00000191,0.000000813,-2.353102058,0.019241994,loss,ns,-0.000000108,0.00000138,-0.078100939,0.937798147,neg,ns,0.000888515,0.000404846,2.19469725,0.028926776,pos,ns,1.538699966,-0.0000352,0.0000139,-2.529189248,0.01192822,neg,ns,0.016984966,Mnt,Mnt_Exon,11,74831359,74831408,74831407,74831408,50,+,CGCTTCCTGGAATGGCAAGCGCAGCAACAACAGAGAGCACGTGGTGAGCG,Promoter (<=1kb),11,74830920,74845725,14806,1,Mnt-201,439,Mettl16-205;Mnt-201;Mnt-203,Mettl16;Mnt;Mnt,60529;0;-4918,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,17,17428,ENSMUSG00000000282,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
19770,cg02112674,0.0000211,0.000007,3.013242777,0.002797854,gain,ns,0.000000928,0.0000119,0.077997761,0.937880154,pos,ns,-0.003006107,0.003483891,-0.862859159,0.388881945,neg,ns,0.410182219,0.000155839,0.000119811,1.300712704,0.194322866,pos,ns,0.844819157,Scn8a,Scn8a_threeUTR,15,101045784,101045833,101045784,101045785,50,-,CGGAAATGGCAGAAATGCTTGAGAAATGAGAATGTGTAAGTGGATTGGAA,3' UTR,15,100870683,101045929,175247,1,Scn8a-201,175101,Fignl2-201;Fignl2-202;Scn8a-201;Scn8a-204;Scn8a-213;Scn8a-203;Scn8a-205;Tmdd1-201,Fignl2;Fignl2;Scn8a;Scn8a;Scn8a;Scn8a;Scn8a;Tmdd1,0;0;0;0;0;0;0;1564,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,24,20273,ENSMUSG00000023033,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
14073,cg11422969,0.0000639,0.000013,4.931788518,0.00000133,gain,yes,-0.00000172,0.000022,-0.077991328,0.937885266,neg,ns,-0.005357652,0.006453707,-0.830166684,0.407083403,neg,ns,0.390316603,0.000312997,0.000221942,1.410264056,0.159464302,pos,ns,0.298823443,Evx2,Evx2_Intergenic_downstream,2,74649231,74649280,74649279,74649280,50,-,GAGGCGCTGACCCGCTATTCAAAATGTTATTTGAGAACCATCACAATGCG,Distal Intergenic,2,74655616,74659419,3804,2,Evx2-202,10188,Evx2-201,Evx2,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,35,14029,ENSMUSG00000001815,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
18980,cg21290622,-0.0000128,0.0000045,-2.850085004,0.004663576,loss,ns,0.000000596,0.00000764,0.077958351,0.937911477,pos,ns,-0.000190612,0.002238566,-0.085149385,0.932197594,neg,ns,0.030492022,-0.0000714,0.000077,-0.927967821,0.354146206,neg,ns,0.915775591,Dach1,Dach1_Intron,14,98104593,98104642,98104641,98104642,50,-,TCCGAGATATTTATTTCCCTAAAGGCTCTGCAAGGATATGAACAGACCCG,"Intron (Dach1-201/Dach1, intron 1 of 10)",14,97786853,98169543,382691,2,Dach1-201,64901,Dach1-201;Dach1-202;Dach1-203,Dach1;Dach1;Dach1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,76,13134,ENSMUSG00000055639,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24368,cg15516023,-0.0000015,0.00000384,-0.390861783,0.696167884,loss,ns,-0.000000508,0.00000652,-0.07795113,0.937917217,neg,ns,0.001610279,0.001909466,0.84331404,0.399703059,pos,ns,0.398262528,-0.0000955,0.0000657,-1.454389096,0.146850184,neg,ns,0.846900247,Zfp384,Zfp384_Exon,6,125031670,125031719,125031718,125031719,50,+,GGATCCACTCCAAGATGCACACGGAGACCATCAAGCCCCACAAGTGCCCG,"Exon (Zfp384-214/Zfp384, exon 9 of 12)",6,125009145,125036180,27036,1,Zfp384-210,22525,Zfp384-210;Zfp384-202;Zfp384-214;Zfp384-208;Zfp384-213;Zfp384-207;Zfp384-201;Zfp384-204;Zfp384-206;Zfp384-212;Zfp384-203;Zfp384-205;Zfp384-215;Zfp384-211,Zfp384;Zfp384;Zfp384;Zfp384;Zfp384;Zfp384;Zfp384;Zfp384;Zfp384;Zfp384;Zfp384;Zfp384;Zfp384;Zfp384,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,6,269800,ENSMUSG00000038346,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5632,cg16797413,-0.0000125,0.00000613,-2.044034584,0.041794879,loss,ns,0.000000811,0.0000104,0.07792758,0.937935934,pos,ns,-0.00165087,0.003050031,-0.541263531,0.588714705,neg,ns,0.230095116,0.00000881,0.00010489,0.083959126,0.933143121,pos,ns,0.913782018,Hdac9,Hdac9_Exon,12,34431891,34431940,34431891,34431892,50,+,CGGAATGATTTTTTCCATTAGTTGGAGTGTCTTTCGTTGCTGATTTACTC,"Exon (Hdac9-205/Hdac9, exon 4 of 25)",12,34047580,34528328,480749,2,Hdac9-205,96388,Hdac9-205;Hdac9-204;Hdac9-206;Hdac9-210;Hdac9-207;Hdac9-212;Hdac9-201;Hdac9-211;Hdac9-208;Hdac9-203;Hdac9-202;Hdac9-209,Hdac9;Hdac9;Hdac9;Hdac9;Hdac9;Hdac9;Hdac9;Hdac9;Hdac9;Hdac9;Hdac9;Hdac9,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,31,79221,ENSMUSG00000004698,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4760,cg08058169,0.00000339,0.000000761,4.458243166,0.0000116,gain,ns,0.000000101,0.00000129,0.07786802,0.937983274,pos,ns,-0.000392697,0.000378623,-1.037171976,0.300464048,neg,ns,0.522207487,0.00000249,0.000013,0.19150009,0.848259178,pos,ns,0.011159918,Ier5l,Ier5l_threeUTR,2,30472788,30472837,30472836,30472837,50,-,TCCCTAGAAGGCGACAATGGCTCGAGTCCAGGCGCCGAGGCTGGCGAGCG,3' UTR,2,30471537,30474219,2683,2,Ier5l-201,1382,Ier5l-201,Ier5l,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,13,72500,ENSMUSG00000089762,conserved gene but different region,2,30472675,30473617,943,*,943,114,0.735949099,0.895782816,0.120890774,9.25E-97,CpGisland,TRUE,U3,Pr-B
20523,cg05602977,0.0000168,0.0000082,2.053158053,0.040896135,gain,ns,-0.00000108,0.0000139,-0.077815194,0.938025261,neg,ns,0.027844521,0.004081518,6.822099469,4.71E-11,pos,yes,10.32669377,-0.000424377,0.000140363,-3.023426609,0.002708018,neg,ns,0.847148776,Copz1,Copz1_Intron,15,103278351,103278400,103278399,103278400,50,+,GCTGGAAGCAGACCTCGGCTTGAACTAAAACCCCCAAAGAGCAATTGACG,"Intron (Copz1-202/Copz1, intron 1 of 6)",15,103272714,103296850,24137,1,Copz1-202,5637,Copz1-202;Copz1-203;Copz1-201;Copz1-204,Copz1;Copz1;Copz1;Copz1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,6,56447,ENSMUSG00000060992,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19849,cg25467897,-0.000000297,0.00000207,-0.143312452,0.886136532,loss,ns,-0.000000274,0.00000352,-0.077812262,0.938027592,neg,ns,-0.001368655,0.001029881,-1.328944915,0.184843444,neg,ns,0.733195949,0.0000689,0.0000354,1.9453838,0.052632558,pos,ns,0.978406313,Nlgn3,Nlgn3_Exon,X,101307060,101307109,101307108,101307109,50,-,GTGTCTGGTCCCCAGGATCCGGCGCTAAGAAACAGGGCGAGGACTTAGCG,"Exon (Gm21986-201/Gm21986-201, exon 7 of 11)",20,101299168,101325963,26796,1,Nlgn3-202,7892,Nlgn3-202;Nlgn3-203;Nlgn3-206;Nlgn3-201,Nlgn3;Nlgn3;Nlgn3;Nlgn3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,16,245537,ENSMUSG00000031302,conserved gene and region,X,101307059,101307160,102,*,102,9,0.607843137,1.092857143,0.088235294,0.00000109,CpGisland,TRUE,U11,Tr-P
10343,cg14984405,-0.00000152,0.00000167,-0.911629243,0.362672275,loss,ns,0.000000221,0.00000284,0.077795384,0.938041006,pos,ns,0.000982457,0.000831055,1.182179706,0.238040383,pos,ns,0.62334936,-0.0000445,0.0000286,-1.558085966,0.120233152,neg,ns,0.955025292,Ext1,Ext1_Exon,15,53107512,53107561,53107560,53107561,50,+,CTGCGACCACGAGGAACCAGACAGAAAGTGGCATTGTGCAGCATTTCCCG,"Exon (Ext1-201/Ext1, exon 2 of 11)",15,53064038,53346159,282122,2,Ext1-201,238598,Ext1-201;Ext1-203;Ext1-202;Ext1-204,Ext1;Ext1;Ext1;Ext1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,16,14042,ENSMUSG00000061731,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16725,cg09364984,-0.00000608,0.00000399,-1.523665085,0.128611853,loss,ns,-0.000000527,0.00000677,-0.077785469,0.938048887,neg,ns,0.000721492,0.001984821,0.363504629,0.71647572,pos,ns,0.144798523,0.0000347,0.0000683,0.507722979,0.612008671,pos,ns,0.897730404,Med13,Med13_Exon,11,86272497,86272546,86272545,86272546,50,-,GGTGGGAGTGTTTACTGTGAAGCAGCTCGTCAGATTGCACTGAAGGCACG,"Exon (Med13-201/Med13, exon 29 of 30)",11,86267033,86357602,90570,2,Med13-201,85056,Med13-201;Med13-202;Med13-203,Med13;Med13;Med13,0;6054;6446,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,12,327987,ENSMUSG00000034297,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21663,cg08481613,-0.00000242,0.00000236,-1.02573648,0.30581553,loss,ns,0.000000311,0.00000401,0.077748733,0.938078086,pos,ns,-0.001149046,0.001173697,-0.978997743,0.328344477,neg,ns,0.483670284,0.0000162,0.0000404,0.400641926,0.688959748,pos,ns,0.895875841,Zfhx3,Zfhx3_Exon,8,108793279,108793328,108793327,108793328,50,-,CAAAAACTTTCAACACCCTTTAGTTTCCACAGCTAACCTCATAGGCCCCG,"Exon (Zfhx3-204/Zfhx3, exon 8 of 16)",8,107942644,108961630,1018987,1,Zfhx3-204,850635,Zfhx3-204;Zfhx3-202;Zfhx3-201,Zfhx3;Zfhx3;Zfhx3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,46,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3205,cg07604651,0.0000253,0.00000495,5.11501391,0.000000551,gain,yes,0.000000653,0.0000084,0.077682979,0.938130349,pos,ns,0.000439487,0.00246145,0.178548016,0.858409243,pos,ns,0.066305615,0.0000523,0.0000846,0.617433407,0.537402152,pos,ns,0.061169396,Fezf1,Fezf1_fiveUTR,6,23248331,23248380,23248331,23248332,50,-,CGCAGCCAAGATCTCGCCAATCGTTAACTTCCAAGAGGAGAAGGTAAACT,Promoter (<=1kb),6,23245044,23248362,3319,2,Fezf1-201,0,Fezf1-201,Fezf1,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,7,73191,ENSMUSG00000029697,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17206,cg06469398,-0.00000508,0.00000381,-1.333362412,0.183391848,loss,ns,-0.000000502,0.00000647,-0.077637568,0.938166444,neg,ns,-0.003569357,0.001895836,-1.882734716,0.060672611,neg,ns,1.217007314,0.0000155,0.0000652,0.237237593,0.812629176,pos,ns,0.916607817,Nrxn3,Nrxn3_fiveUTR,12,89187205,89187254,89187205,89187206,50,+,CGGTCTCCTTGGTCATTAACCTGGGGTCCGGGGCCTTTGAGGCCATTGTG,5' UTR,12,88722876,89261571,538696,1,Nrxn3-209,464329,Nrxn3-209;Nrxn3-213;Nrxn3-208;Nrxn3-205;Nrxn3-211;Nrxn3-201,Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3,0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,39,18191,ENSMUSG00000066392,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8075,cg07515696,0.000013,0.00000306,4.244280698,0.000029,gain,ns,-0.000000403,0.00000519,-0.077582938,0.938209865,neg,ns,0.007924127,0.001521517,5.208044856,0.000000348,pos,ns,6.45782433,-0.000175419,0.0000523,-3.352504862,0.000900078,neg,ns,0.070065327,Pax2,Pax2_Intergenic_upstream,19,44724189,44724238,44724237,44724238,50,+,AAAGCCGAGATTTTAATCTTTAATCCATGAGCAATCAGCGAGCAGCGGCG,Distal Intergenic,19,44756045,44837851,81807,1,Pax2-203,-31807,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,101,166,18504,ENSMUSG00000004231,conserved gene and region,19,44723992,44724314,323,*,323,27,0.616099071,0.905795596,0.083591331,1.06E-18,CpGisland,TRUE,U13,Hc-P
7912,cg17888556,-0.0000348,0.00000951,-3.663571761,0.000292437,loss,ns,0.00000125,0.0000162,0.077440148,0.938323361,pos,ns,-0.00668342,0.004732132,-1.412348615,0.158850419,neg,ns,0.799011636,0.0000763,0.000162738,0.468710738,0.639605835,pos,ns,0.837363179,Hif1an,Hif1an_Intron,19,44632659,44632708,44632707,44632708,50,+,TAACCATGGAGTAATTTTATCCTTGTTTCCCTAATGATGCCATAATGGCG,"Intron (Gm35460-201/Gm35460-201, intron 3 of 6)",19,44562850,44576274,13425,1,Hif1an-201,69809,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,31,319594,ENSMUSG00000036450,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26990,cg07039889,-0.00000386,0.00000296,-1.305412604,0.192720401,loss,ns,0.000000389,0.00000502,0.077427115,0.93833372,pos,ns,0.003033239,0.00147174,2.060987649,0.040138021,pos,ns,1.396444044,-0.000103046,0.0000506,-2.035954498,0.042604815,neg,ns,0.939322259,Ccnl2,Ccnl2_Exon,4,155817911,155817960,155817959,155817960,50,-,CGTATCTTCCAGATAATCGTTATGTACCTTCAGGTGTTAGAGTGTGAGCG,"Exon (Ccnl2-201/Ccnl2, exon 5 of 11)",4,155812489,155824543,12055,1,Ccnl2-201,5422,Ccnl2-201;Ccnl2-205;Ccnl2-203;Ccnl2-204;Ccnl2-202,Ccnl2;Ccnl2;Ccnl2;Ccnl2;Ccnl2,0;0;0;5133;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,3,56036,ENSMUSG00000029068,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18734,cg23045602,0.00000045,0.00000205,0.219642491,0.826294154,gain,ns,-0.000000269,0.00000348,-0.077373697,0.938376179,neg,ns,0.000792512,0.001019728,0.77717942,0.437645573,pos,ns,0.35887746,-0.0000617,0.0000351,-1.758806433,0.079596994,neg,ns,0.065166975,Spsb4,Spsb4_fiveUTR,9,97018816,97018865,97018816,97018817,50,+,CGGAGGCTGCAGCTGAAAGCCGATCTGGCTGAGCTCATCCCTGAAGGCCA,Promoter (<=1kb),9,96943482,97018843,75362,2,Spsb4-201,0,Spsb4-201;Spsb4-202,Spsb4;Spsb4,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,3,211949,ENSMUSG00000046997,conserved gene and region,9,97018208,97019241,1034,*,1034,100,0.691489362,0.811706153,0.096711799,3.21E-74,CpGisland,TRUE,U3,Pr-B
15017,cg10876821,-0.0000145,0.00000816,-1.775258458,0.076836328,loss,ns,-0.00000107,0.0000139,-0.077281255,0.938449657,neg,ns,0.005242299,0.004059431,1.291387595,0.19753138,pos,ns,0.704363903,-0.000348229,0.000139604,-2.494417676,0.013136844,neg,ns,0.868299099,Slc14a2,Slc14a2_Intron,18,78500010,78500059,78500058,78500059,50,+,GGCTAAGTAGACTGGAAAACGTGAAATTAACACACATTGTTTATTTCACG,"Intron (Slc14a2-206/Slc14a2, intron 2 of 21)",18,78146148,78596942,450795,2,Slc14a2-206,96883,Slc14a2-206;Slc14a2-203,Slc14a2;Slc14a2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,12,27411,ENSMUSG00000024552,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14628,cg08946655,0.00000811,0.00000437,1.854632596,0.064598132,gain,ns,0.000000573,0.00000743,0.077114577,0.938582143,pos,ns,-0.001708439,0.002177441,-0.784608683,0.433282193,neg,ns,0.363229159,0.0000441,0.0000749,0.589255169,0.55611928,pos,ns,0.079184365,Max,Max_Exon,12,76961227,76961276,76961227,76961228,50,-,CGGAAATAAAAATGAAATGGAGAGTAGGAGACGTACCGCAGATTGAAACC,Promoter (<=1kb),12,76937269,76962185,24917,2,Max-202,909,Max-202;Max-201;Max-205;Max-204,Max;Max;Max;Max,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,5,17187,ENSMUSG00000059436,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
246,cg12188650,-0.0000201,0.00000699,-2.871419935,0.004367761,loss,ns,-0.000000915,0.0000119,-0.077096818,0.938596259,neg,ns,0.013334021,0.003477914,3.833912954,0.000152751,pos,ns,3.816016445,-0.00062099,0.000119605,-5.1919961,0.000000377,neg,yes,0.631912622,Gm21992,Gm21992_Exon,19,4803749,4803798,4803797,4803798,50,-,CTTGCCCATCAAAGCCACCAGTGCTGTTGCCAAAAGCCTGCTGGTAGTCG,"Exon (Rbm14-201/Rbm14, exon 2 of 3)",19,4742913,4811612,68700,2,Gm21992-203,7814,Gm21992-203;Gm21992-206;Gm21992-204;Gm21992-201;Gm21992-205;Gm21992-202;Rbm14-201;Rbm14-202;Rbm14-203,Gm21992;Gm21992;Gm21992;Gm21992;Gm21992;Gm21992;Rbm14;Rbm14;Rbm14,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,27,48,102902673,ENSMUSG00000096370,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27500,cg20738012,0.0000392,0.00000518,7.563055206,4.50E-13,gain,yes,-0.000000678,0.0000088,-0.077002781,0.938671006,neg,ns,0.00781418,0.002578126,3.030954077,0.002643325,pos,ns,2.577849368,-0.000342366,0.0000887,-3.861499686,0.000137194,neg,ns,0.107669196,Nfatc2,Nfatc2_Promoter,2,168601799,168601848,168601847,168601848,50,+,TGCAGTAAAATAACGGGATTCCCTCACTGTTTCCTCCTGTTTATCCAGCG,Promoter (<=1kb),2,168519098,168601657,82560,2,Nfatc2-205,-142,Nfatc2-203;Nfatc2-209;Nfatc2-205,Nfatc2;Nfatc2;Nfatc2,-167;-144;-142,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,4,4,18019,ENSMUSG00000027544,conserved gene and region,2,168601147,168601870,724,*,724,65,0.662983425,0.81707063,0.089779006,2.91E-46,CpGisland,TRUE,NA,NRS
3943,cg08987848,0.0000289,0.00000836,3.458722402,0.0006187,gain,ns,-0.00000109,0.0000142,-0.076992663,0.938679049,neg,ns,-0.001268433,0.004162654,-0.304717503,0.760785786,neg,ns,0.11873761,0.0000741,0.000143153,0.517900586,0.604897032,pos,ns,0.869931865,5730522E02Rik,5730522E02Rik_Intron,11,25855557,25855606,25855557,25855558,50,+,CGTCAGTCAGGGAGCGAAACTGGTGCTAATAAAGCCCACTATATTCTTCG,"Intron (5730522E02Rik-202/5730522E02Rik, intron 2 of 5)",11,25617668,26210569,592902,2,5730522E02Rik-202,354963,5730522E02Rik-202;5730522E02Rik-201;5730522E02Rik-204,5730522E02Rik;5730522E02Rik;5730522E02Rik,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,90,70626,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23230,cg25854386,-0.00000543,0.00000263,-2.06178514,0.040061479,loss,ns,0.000000344,0.00000447,0.076902168,0.938750981,pos,ns,0.001100093,0.001309969,0.839786086,0.401675516,pos,ns,0.39612464,-0.0000814,0.000045,-1.805844242,0.071912561,neg,ns,0.948317988,Eri3,Eri3_Intron,4,117570029,117570078,117570029,117570030,50,+,CGACGTTAATGTAACATTATGGTTGAGATTAAATGCACCAAAATCAGGAA,"Intron (Eri3-201/Eri3, intron 3 of 8)",4,117550365,117674297,123933,1,Eri3-201,19664,Eri3-201;Eri3-205;Eri3-206,Eri3;Eri3;Eri3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,82,97,140546,ENSMUSG00000033423,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2414,cg05173571,-0.0000668,0.0000113,-5.923832096,8.36E-09,loss,yes,-0.00000147,0.0000191,-0.076901391,0.938751599,neg,ns,-0.013211689,0.005608583,-2.35562002,0.019114417,neg,ns,1.718638952,-0.0000381,0.000192879,-0.197741922,0.843376587,neg,ns,0.627755141,Gm4849,Gm4849_Intergenic_downstream,1,19337327,19337376,19337375,19337376,50,+,CTTTGGCTTACAGCCCAATGCCATCAGAACTAATTAAAAACAGAGCCACG,Distal Intergenic,1,19330939,19333184,2246,1,Gm4849-201,6388,Gm4849-201,Gm4849,6388,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,10,226901,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27676,cg17504468,-0.0000141,0.00000909,-1.551998418,0.121682883,loss,ns,0.00000118,0.0000154,0.076627606,0.938969227,pos,ns,-0.009897722,0.004525229,-2.18723103,0.029472495,neg,ns,1.530583102,0.00032761,0.000155622,2.105161322,0.036081634,pos,ns,0.859090089,Sdccag8,Sdccag8_Intron,1,176999216,176999265,176999264,176999265,50,-,TTTATTTCTGAGTCACTCTGTTCAGCTCAATTGGTCGCCTTCAGTTACCG,"Intron (Sdccag8-201/Sdccag8, intron 16 of 17)",1,176814660,177020437,205778,1,Sdccag8-201,184556,Sdccag8-201;Sdccag8-203;Sdccag8-205,Sdccag8;Sdccag8;Sdccag8,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,20,76816,ENSMUSG00000026504,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14692,cg25908356,0.00000893,0.0000092,0.970531428,0.332538292,gain,ns,-0.0000012,0.0000156,-0.07650403,0.939067458,neg,ns,-0.009888291,0.004580998,-2.158545223,0.031652762,neg,ns,1.499588385,0.000413678,0.00015754,2.625857815,0.009072009,pos,ns,0.720665055,Epha4,Epha4_Intergenic_downstream,1,77254549,77254598,77254597,77254598,50,-,ATAGAACACTAATCTCCGAGAATCTCAAAGTATCAGCTTACCTGTGAACG,Distal Intergenic,1,77373613,77377607,3995,2,Epha4-203,123058,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,9,13838,ENSMUSG00000026235,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4611,cg11139892,0.0000463,0.00000727,6.364956321,7.02E-10,gain,yes,-0.000000942,0.0000123,-0.076346677,0.939192539,neg,ns,0.009542028,0.003616646,2.638363967,0.008751311,pos,ns,2.057926878,-0.000292747,0.000124376,-2.353720243,0.019210604,neg,ns,0.133150848,Ntm,Ntm_Intron,9,29943494,29943543,29943542,29943543,50,-,ATCTCCTTTGATTACTCACTCTCTGTTGAAACAGACAACCTGTTGCCACG,"Intron (Ntm-201/Ntm, intron 1 of 7)",9,28994750,29963129,968380,2,Ntm-201,19586,Ntm-201;Ntm-204;Ntm-210;Ntm-207;Ntm-209,Ntm;Ntm;Ntm;Ntm;Ntm,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,27,32,235106,ENSMUSG00000059974,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25291,cg00350220,-1.18E-08,0.00000505,-0.002339752,0.998134655,loss,ns,-0.000000654,0.00000858,-0.076187043,0.939319435,neg,ns,0.00119493,0.002514599,0.475196923,0.634981253,pos,ns,0.197239096,-0.0000551,0.0000865,-0.636930734,0.524640026,neg,ns,0.901528312,Drp2,Drp2_Exon,X,134446221,134446270,134446269,134446270,50,+,TCCAGTGAGAACATGAGGGACTTTGCCACAACCTTAAAGAACAAATTCCG,"Exon (Drp2-204/Drp2, exon 18 of 24)",20,134404551,134452700,48150,1,Drp2-204,41670,Drp2-204;Drp2-206;Drp2-202;Drp2-203;Drp2-201,Drp2;Drp2;Drp2;Drp2;Drp2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,13497,ENSMUSG00000000223,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15315,cg04590323,0.0000179,0.00000345,5.20190378,0.000000359,gain,yes,-0.000000445,0.00000585,-0.076052384,0.93942648,neg,ns,0.002300493,0.00171513,1.341293483,0.18080701,pos,ns,0.742784735,0.000000376,0.000059,0.006381561,0.99491239,pos,ns,0.099476963,Cacna1i,Cacna1i_fiveUTR,15,80287217,80287266,80287265,80287266,50,-,CAGCTTTCCCCGAAGACATTTGGTGTCAGTATAAGGACGGCTTTTCCTCG,Promoter (<=1kb),15,80287238,80398279,111042,1,Cacna1i-202,0,Cacna1i-202;Cacna1i-205,Cacna1i;Cacna1i,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,11,239556,ENSMUSG00000022416,conserved gene but different region,15,80287087,80287795,709,*,709,110,0.784203103,1.042870133,0.155148096,1.38E-107,CpGisland,TRUE,NA,NRS
6295,cg19716020,-0.0000279,0.00000985,-2.827973801,0.004989284,loss,ns,-0.00000127,0.0000167,-0.075872837,0.939569208,neg,ns,-0.006134053,0.004903623,-1.250922667,0.211905961,neg,ns,0.673856827,-0.000293905,0.000168635,-1.742844427,0.082352356,neg,ns,0.844989428,Tshz3,Tshz3_Intron,7,36739549,36739598,36739549,36739550,50,-,CGCCTAAGGAAGGCAGGCTGCTTGACACATTGGCCGAACACCTAAATCAG,"Intron (Tshz3-201/Tshz3, intron 1 of 1)",7,36698118,36773553,75436,1,Tshz3-201,41431,Tshz3-201,Tshz3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,58,243931,ENSMUSG00000021217,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14417,cg04279210,-0.0000321,0.00000721,-4.448470086,0.0000121,loss,ns,0.000000929,0.0000122,0.075863799,0.939576393,pos,ns,-0.010214084,0.003586798,-2.847688382,0.00469792,neg,ns,2.328094369,0.000107126,0.00012335,0.868471889,0.385807896,pos,ns,0.836692639,Gm13655,Gm13655_Intergenic_downstream,2,75516209,75516258,75516257,75516258,50,+,TAAATTGAGTCAATTGACTTATCCTTATATCCTGTTTCCTGAACTTAACG,Distal Intergenic,2,75632638,75633382,745,2,Gm13655-201,117124,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,667828,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9777,cg26959972,0.000023,0.000012,1.909999922,0.057055878,gain,ns,-0.00000155,0.0000204,-0.07579455,0.939631442,neg,ns,-0.006467395,0.005989978,-1.079702658,0.281113924,neg,ns,0.551117642,0.000123812,0.000205995,0.601043033,0.54825054,pos,ns,0.551173907,Nell1,Nell1_Exon,7,50826336,50826385,50826384,50826385,50,-,CTGTGAGTGCAGAAGCGGTTTCCATGACGATGGGACCTATTCACTGTCCG,"Exon (Nell1-201/Nell1, exon 16 of 20)",7,49974864,50866608,891745,1,Nell1-201,851472,Nell1-201;Nell1-202,Nell1;Nell1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,6,338352,ENSMUSG00000055409,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5719,cg25477526,-0.000000557,0.00000165,-0.338530875,0.735192335,loss,ns,0.000000212,0.0000028,0.075705371,0.939702335,pos,ns,-0.000210896,0.000819437,-0.257366922,0.797066284,neg,ns,0.098505561,0.00000223,0.0000282,0.079193227,0.936930027,pos,ns,0.966123083,Add1,Add1_Exon,5,34616822,34616871,34616822,34616823,50,+,CGAACATTACACACGATCACGTGAAACCCTTGCTGCAGTCTCTCTCGTCC,"Exon (Add1-201/Add1, exon 10 of 16)",5,34573664,34632308,58645,1,Add1-204,43158,Add1-204;Add1-201;Add1-205;Add1-203;Add1-202;Add1-206;Add1-209;Add1-215;Add1-213;Add1-207;Add1-208,Add1;Add1;Add1;Add1;Add1;Add1;Add1;Add1;Add1;Add1;Add1,0;0;0;0;0;0;0;0;-2483;-2978;-3100,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,6,11518,ENSMUSG00000029106,conserved gene and region,5,34616676,34616881,206,*,206,15,0.572815534,0.894097222,0.072815534,9.91E-10,CpGisland,TRUE,U10,Tr-S
589,cg04605217,-0.00000933,0.00000291,-3.21014521,0.001465765,loss,ns,0.000000374,0.00000494,0.075701897,0.939705097,pos,ns,0.001430126,0.001446197,0.988886933,0.323489675,pos,ns,0.490139576,0.0000121,0.0000497,0.243182615,0.808024768,pos,ns,0.92810567,Macrod1,Macrod1_Intron,19,7138345,7138394,7138345,7138346,50,-,CGGCTCCGGTTTGAGAATCATTTTAATGTATTTATCTGTGAGGCAATTTG,"Intron (Macrod1-201/Macrod1, intron 3 of 10)",19,7056810,7198057,141248,1,Macrod1-201,81535,Macrod1-201,Macrod1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,11,107227,ENSMUSG00000036278,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
6948,cg07861304,0.000000393,0.00000146,0.269401536,0.78779993,gain,ns,0.000000187,0.00000248,0.075557649,0.939819768,pos,ns,-0.00150777,0.000726067,-2.076627463,0.038659482,neg,ns,1.412743974,0.0000363,0.000025,1.452508324,0.147371716,pos,ns,0.96071678,Map4k4,Map4k4_Exon,1,40003722,40003771,40003722,40003723,50,-,CGCATTGAATGTTTTGTGTTTTGTTTTCTTGTAAGGTACAGTGGTCCCAC,"Exon (Map4k4-201/Map4k4, exon 17 of 31)",1,39900913,40026310,125398,1,Map4k4-201,102809,Map4k4-201;Map4k4-202;Map4k4-213;Map4k4-218;Map4k4-215;Map4k4-217;Map4k4-209;Map4k4-216;Map4k4-208;Map4k4-206;Map4k4-205;Map4k4-207,Map4k4;Map4k4;Map4k4;Map4k4;Map4k4;Map4k4;Map4k4;Map4k4;Map4k4;Map4k4;Map4k4;Map4k4,0;0;0;0;0;0;0;0;0;0;0;-3622,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,12,26921,ENSMUSG00000026074,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
7324,cg08291302,-0.00000177,0.000000851,-2.078903813,0.038448208,loss,ns,-0.000000109,0.00000145,-0.075549453,0.939826283,neg,ns,0.000310146,0.000423726,0.731948399,0.464753041,pos,ns,0.33277776,0.00000479,0.0000146,0.328864821,0.74247992,pos,ns,0.027404848,Edn1,Edn1_Promoter,13,42301385,42301434,42301433,42301434,50,-,CTCTAATGGGTATTTTCTTTTTCTTAGCCCTGCCCCCGAATTGTCAGACG,Promoter (<=1kb),13,42301476,42307990,6515,1,Edn1-201,-91,Edn1-201,Edn1,-42,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,1,13614,ENSMUSG00000021367,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6341,cg13296708,0.0000167,0.00000717,2.332480257,0.020315286,gain,ns,0.000000916,0.0000122,0.075155695,0.94013931,pos,ns,0.006313154,0.003570812,1.76798825,0.07804645,pos,ns,1.107646844,-0.0000303,0.0001228,-0.246943734,0.805115225,neg,ns,0.846110387,Tshz3,Tshz3_Intergenic_downstream,7,36940889,36940938,36940937,36940938,50,-,CTCATAACACACCAGTAAAACTTTAACTCAGAAGATTTAGTGCGAGAGCG,Distal Intergenic,7,36698217,36702113,3897,1,Tshz3-202,242721,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,21,58,243931,ENSMUSG00000021217,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22962,cg17682856,-0.000004,0.00000764,-0.523252299,0.601172503,loss,ns,-0.000000975,0.000013,-0.075140892,0.940151079,neg,ns,0.002891317,0.003802221,0.760428363,0.447576542,pos,ns,0.349132683,-0.000365676,0.000130758,-2.796581055,0.005487265,neg,ns,0.746594927,Alox5,Alox5_Exon,6,116415472,116415521,116415520,116415521,50,-,GGACGTGGAAGTCACTGGAACGCACCCAGATTTTGGCCAAAAGCCAGTCG,"Exon (Alox5-201/Alox5, exon 8 of 14)",6,116410077,116461178,51102,2,Alox5-201,45657,Alox5-201;Alox5-204;Alox5-206;Alox5-208;Alox5-202;Alox5-207;Alox5-205;Alox5-203,Alox5;Alox5;Alox5;Alox5;Alox5;Alox5;Alox5;Alox5,0;0;-2680;0;0;0;-1452;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,11689,ENSMUSG00000025701,conserved gene but different region,6,116415405,116415534,130,*,130,9,0.530769231,0.988175676,0.069230769,0.000008,CpGisland,TRUE,U11,Tr-P
13137,cg19604048,0.0000575,0.00000939,6.120164404,2.82E-09,gain,yes,0.0000012,0.000016,0.075117906,0.940169353,pos,ns,0.018917495,0.004673833,4.047533104,0.0000654,pos,ns,4.184240595,-0.000371259,0.000160733,-2.30979347,0.021556344,neg,ns,0.177262788,Dnah2,Dnah2_Promoter,11,69553137,69553186,69553185,69553186,50,+,CAAGTCCCTGAGGCTGATAGCCAGCGATGGGGCTGTCGGCTCCATCCACG,Promoter (4-5kb),11,69510666,69549110,38445,2,Dnah2-203,-4027,Dnah2-202;Dnah2-203;Efnb3-201,Dnah2;Dnah2;Efnb3,0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,7,10,327954,ENSMUSG00000005237,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11653,cg24797493,-0.00000201,0.00000101,-1.986162133,0.047895737,loss,ns,0.000000129,0.00000172,0.075088923,0.940192393,pos,ns,-0.000422013,0.000502454,-0.839903058,0.401610023,neg,ns,0.396195457,-0.00000176,0.0000173,-0.10173872,0.919029841,neg,ns,0.028573883,Trib1,Trib1_Promoter,15,59647769,59647818,59647817,59647818,50,-,CCAGTGTTTGCTTTTATTTCCTCCAACAGAAGGTTCTATTTGTGGAAGCG,Promoter (<=1kb),15,59648350,59657099,8750,1,Trib1-201,-581,Trib1-201;Trib1-202,Trib1;Trib1,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,5,211770,ENSMUSG00000032501,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
4165,cg07904661,0.000000624,0.00000384,0.162416604,0.871083612,gain,ns,0.00000049,0.00000652,0.075077621,0.940201379,pos,ns,-0.005213648,0.001911369,-2.727703406,0.006741228,neg,ns,2.17126097,0.000177656,0.0000657,2.702744675,0.007255997,pos,ns,0.839019759,Itpr3,Itpr3_Exon,17,27107656,27107705,27107656,27107657,50,+,CGGAGGTGGAGATGAAGGAGATCTACACCAGCAACCACATCTGGACGCTC,"Exon (Itpr3-201/Itpr3, exon 32 of 58)",17,27057304,27122223,64920,1,Itpr3-201,50352,Itpr3-201;Itpr3-202,Itpr3;Itpr3,0;1479,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,16440,ENSMUSG00000042644,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13238,cg24479261,-0.00000287,0.00000225,-1.277490831,0.202384902,loss,ns,0.000000286,0.00000382,0.075065711,0.940210847,pos,ns,-0.001211149,0.001117944,-1.083371164,0.279485614,neg,ns,0.553640542,0.00000992,0.0000384,0.257969096,0.79660193,pos,ns,0.934882467,Nlgn2,Nlgn2_Exon,11,69830609,69830658,69830609,69830610,50,-,CGGACCTAAGACCGGGAACACAAAACAGAGAAAAAAGGACAATTTTGTGG,"Exon (Nlgn2-201/Nlgn2, exon 2 of 7)",11,69823122,69834849,11728,2,Nlgn2-201,4191,Nlgn2-201;Nlgn2-202;Nlgn2-203;Nlgn2-204,Nlgn2;Nlgn2;Nlgn2;Nlgn2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,17,216856,ENSMUSG00000051790,conserved gene and region,11,69830545,69830622,78,*,78,8,0.512820513,1.575757576,0.102564103,0.00000181,CpGisland,TRUE,U11,Tr-P
25348,cg16326776,-0.00000167,0.00000106,-1.569668577,0.117512345,loss,ns,0.000000136,0.00000181,0.074985756,0.940274411,pos,ns,-0.0000221,0.000529637,-0.041776804,0.966703521,neg,ns,0.0147067,-0.0000155,0.0000182,-0.851022425,0.395413767,neg,ns,0.969448586,Nav1,Nav1_Exon,1,135469761,135469810,135469809,135469810,50,-,TGGAGGGACTCCATGCTCCTGTGCAGGCCTGAGAGTTTGGGGTACATGCG,"Exon (Nav1-201/Nav1, exon 7 of 30)",1,135434580,135585355,150776,2,Nav1-201,115545,Nav1-201;Nav1-202;Nav1-208;Nav1-205;Nav1-206;Nav1-207,Nav1;Nav1;Nav1;Nav1;Nav1;Nav1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,11,12,215690,ENSMUSG00000009418,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5903,cg04709427,-0.00000182,0.00000522,-0.348007879,0.728070458,loss,ns,-0.000000664,0.00000886,-0.074964983,0.940290925,neg,ns,0.001400894,0.002596824,0.539464513,0.58995363,pos,ns,0.229182122,-0.0000228,0.0000893,-0.255203393,0.798735241,neg,ns,0.918119406,Ctnna1,Ctnna1_fiveUTR,18,35213619,35213668,35213667,35213668,50,-,AGCTCTCTCAGTTTAATTAATCCTGCAAATCCATTGCGAGCCAAACTTCG,5' UTR,18,35118859,35254779,135921,1,Ctnna1-201,94760,Ctnna1-201;Ctnna1-204;Ctnna1-210;Ctnna1-203;Ctnna1-202;Lrrtm2-201;Lrrtm2-202;Lrrtm2-203,Ctnna1;Ctnna1;Ctnna1;Ctnna1;Ctnna1;Lrrtm2;Lrrtm2;Lrrtm2,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,6,13,12385,ENSMUSG00000037815,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15632,cg09176370,-0.0000027,0.00000161,-1.672072975,0.095518901,loss,ns,0.000000205,0.00000274,0.07494282,0.940308545,pos,ns,0.000817047,0.000802567,1.018042356,0.309451682,pos,ns,0.509407152,-0.0000148,0.0000276,-0.537744151,0.591139515,neg,ns,0.950852666,Sipa1l1,Sipa1l1_threeUTR,12,82449989,82450038,82449989,82449990,50,-,CGGACAAGCTGAAGAAGTTCACAGAATGGGTCTTCAACACCATAGACATG,3' UTR,12,82169420,82451786,282367,1,Sipa1l1-202,280569,Sipa1l1-202;Sipa1l1-205;Sipa1l1-208;Sipa1l1-210;Sipa1l1-201,Sipa1l1;Sipa1l1;Sipa1l1;Sipa1l1;Sipa1l1,0;280543;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,217692,ENSMUSG00000042700,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12551,cg01852109,-0.0000226,0.00000694,-3.260599163,0.001235514,loss,ns,-0.000000882,0.0000118,-0.074825259,0.940402005,neg,ns,-0.006536771,0.003454167,-1.89243041,0.059365191,neg,ns,1.226468132,0.0000841,0.000118789,0.707701266,0.479662506,pos,ns,0.883665904,Igdcc4,Igdcc4_Exon,9,65124671,65124720,65124671,65124672,50,-,CGGGACCTGGAACCCAACACAGATTATGAGTTCTACGTGGTGGCCTACTC,"Exon (Igdcc4-201/Igdcc4, exon 8 of 20)",9,65101486,65137940,36455,1,Igdcc4-201,23185,Igdcc4-201;Igdcc4-202;Igdcc4-205;Igdcc4-204;Igdcc4-206;Igdcc4-203,Igdcc4;Igdcc4;Igdcc4;Igdcc4;Igdcc4;Igdcc4,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,56741,ENSMUSG00000032816,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25419,cg21095072,-0.00000255,0.000012,-0.212661013,0.831731148,loss,ns,-0.00000152,0.0000204,-0.074803069,0.940419647,neg,ns,-0.000333875,0.005964261,-0.055979243,0.955394405,neg,ns,0.019817306,-0.000344097,0.00020511,-1.677620561,0.094429078,neg,ns,0.731986581,Gm5904,Gm5904_Intron,7,136341765,136341814,136341813,136341814,50,+,AATCATAAATGGTACAAATTGGGCCCATGTGCAAACAGAAACCCGAGCCG,"Intron (C230079O03Rik-201/C230079O03Rik-201, intron 4 of 4)",7,136657209,136658073,865,1,Gm5904-201,-315395,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,17,546009,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17928,cg24336374,0.000136607,0.000015,9.12186909,9.61E-18,gain,yes,-0.0000019,0.0000254,-0.074742025,0.940468178,neg,ns,0.02602043,0.007453576,3.490999304,0.000551064,pos,ns,3.25879807,-0.000829648,0.000256328,-3.23666528,0.001340199,neg,ns,0.434503437,Runx1,Runx1_threeUTR,16,92605516,92605565,92605564,92605565,50,+,CTTTTTATTCACAGCATTGCTAAATCAGAAGCATTCACAGTTTCCCTCCG,3' UTR,16,92601466,92826149,224684,2,Runx1-201,220584,Runx1-201;Runx1-202;Runx1-203,Runx1;Runx1;Runx1,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,10,12394,ENSMUSG00000022952,conserved gene and region,16,92605564,92606133,570,*,570,57,0.696491228,0.870298939,0.1,1.76E-43,CpGisland,TRUE,U11,Tr-P
8759,cg17096775,0.0000609,0.00000921,6.612138707,1.66E-10,gain,yes,0.00000117,0.0000156,0.074593139,0.940586544,pos,ns,0.013926845,0.00458344,3.038513538,0.002579789,pos,ns,2.588415768,-0.000249404,0.000157624,-1.582270782,0.114607437,neg,ns,0.350075303,Fgf8,Fgf8_Intergenic_downstream,19,45718134,45718183,45718182,45718183,50,-,TTTAACTCTTTCATCAGCATTAAGTTTCCAACCCCACAGCTGTTATCACG,Distal Intergenic,19,45736990,45742684,5695,2,Fgf8-204,24550,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,18,14179,ENSMUSG00000025219,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24604,cg16747460,0.0000831,0.00000847,9.813857997,5.65E-20,gain,yes,0.00000107,0.0000144,0.074566577,0.940607661,pos,ns,0.011474368,0.004216107,2.721555003,0.00686488,pos,ns,2.163367035,-0.0000737,0.000144992,-0.508354111,0.611566585,neg,ns,0.052682025,Dlgap3,Dlgap3_Intron,4,127179635,127179684,127179635,127179636,50,-,CGCCAGAGCCGCCCACCTGCCCGCGGTGTCATGGCAACGACTCTGCCCAC,"Intron (Dlgap3-201/Dlgap3, intron 1 of 11)",4,127169204,127237022,67819,1,Dlgap3-201,10431,Dlgap3-201;Dlgap3-203,Dlgap3;Dlgap3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,7,242667,ENSMUSG00000042388,conserved gene and region,4,127179626,127179728,103,*,103,11,0.660194175,0.993859649,0.106796117,5.16E-09,CpGisland,TRUE,NA,NRS
10018,cg04416060,-0.00000046,0.000000427,-1.078214111,0.281776476,loss,ns,-0.000000054,0.000000725,-0.074530227,0.94063656,neg,ns,0.00019269,0.000212275,0.907735508,0.364723072,pos,ns,0.438036763,-0.000016,0.0000073,-2.198103075,0.028680756,neg,ns,0.010449967,Jade2,Jade2_Promoter,11,51858222,51858271,51858270,51858271,50,+,CGTCAAAAAGACGTTTCTTTGCAAATAACAGCCTGGAGGCGACACTCGCG,Promoter (<=1kb),11,51813455,51857653,44199,2,Jade2-202,-569,Jade2-201;Jade2-202;Jade2-203;Jade2-204,Jade2;Jade2;Jade2;Jade2,0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,4,6,76901,ENSMUSG00000020387,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12130,cg24827343,-0.00000167,0.00000201,-0.831169443,0.406517638,loss,ns,-0.000000254,0.00000341,-0.074504001,0.940657411,neg,ns,-0.000852353,0.000998595,-0.853551895,0.39401237,neg,ns,0.404490144,0.0000125,0.0000343,0.364954813,0.71539399,pos,ns,0.949333264,Ino80d,Ino80d_Exon,1,63074451,63074500,63074451,63074452,50,-,CGCTCCAGGCGGCAGAGGTGCTTATATTTCTGCTGAAAGTAAGTGCAAAG,"Exon (Ino80d-202/Ino80d, exon 4 of 13)",1,62958418,63091929,133512,2,Ino80d-202,17429,Ino80d-202;Ino80d-205;Ino80d-206;Ino80d-201;Ino80d-203;Ino80d-204;Rps27-ps1-201,Ino80d;Ino80d;Ino80d;Ino80d;Ino80d;Ino80d;Rps27-ps1,0;0;0;0;0;0;677,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,12,227195,ENSMUSG00000040865,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9341,cg17853439,0.000000388,0.00000483,0.080436767,0.935941789,gain,ns,-0.000000611,0.00000821,-0.074424145,0.940720898,neg,ns,0.004081872,0.002403832,1.698068778,0.090498245,pos,ns,1.043359843,-0.0000999,0.0000827,-1.208291431,0.227856087,neg,ns,0.913408085,Gm13482,Gm13482_Intron,2,48250431,48250480,48250479,48250480,50,+,TGCAAATGACCAGGCTCAGTTACTGTTATTTTTAAAAACATTACTTATCG,"Intron (Gm13481-201/Gm13481-201, intron 2 of 5)",2,48298908,48299161,254,1,Gm13482-201,-48428,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,100416622,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17473,cg26934752,-0.0000154,0.00000553,-2.788428051,0.005623766,loss,ns,0.000000698,0.0000094,0.074216057,0.940886336,pos,ns,-0.005753006,0.00275394,-2.089009206,0.037522169,neg,ns,1.425712069,0.00011746,0.0000947,1.240233262,0.215827029,pos,ns,0.915434325,Gm12635,Gm12635_Intergenic_upstream,4,90438079,90438128,90438127,90438128,50,+,CCAGTATGGCATCACCACAGGGAGTGCAGCTTGTGATTTTTGTATGCTCG,Distal Intergenic,4,90452874,90453625,752,1,Gm12635-201,-14746,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,5,100417247,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13665,cg26148191,0.0000151,0.00000303,5.00649663,0.000000932,gain,yes,-0.000000381,0.00000514,-0.074206262,0.940894123,neg,ns,0.00374903,0.001505882,2.489590996,0.013312944,pos,ns,1.875725895,-0.0000984,0.0000518,-1.899300014,0.058453144,neg,ns,0.071469763,Irx1,Irx1_Promoter,13,71963743,71963792,71963791,71963792,50,-,ACAATTTGAAGTTGATGCTTTGATTGGCATCCCCTTGAGCGCAGGCCCCG,Promoter (<=1kb),13,71957921,71963723,5803,2,Irx1-201,-69,Irx1-201;Irx1-202;Irx1-203,Irx1;Irx1;Irx1,-20;-4310;-3027,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,8,16371,ENSMUSG00000060969,conserved gene and region,13,71963791,71964081,291,*,291,28,0.701030928,0.837582237,0.096219931,3.94E-21,CpGisland,TRUE,U3,Pr-B
7795,cg19843721,0.00000106,0.00000713,0.148344502,0.882167343,gain,ns,0.000000898,0.0000121,0.074136643,0.940949474,pos,ns,-0.00309817,0.003549731,-0.872790119,0.383453016,neg,ns,0.416287842,-0.0000747,0.000122075,-0.612185241,0.540863959,neg,ns,0.838827115,Myot,Myot_Intron,18,44323208,44323257,44323256,44323257,50,-,TTCTCTTTACAAAGAGCTAGGGTTACACTCAGCAAAGGTTACCATTTACG,"Intron (Gm41717-201/Gm41717-201, intron 2 of 2)",18,44334074,44355724,21651,1,Myot-202,-10866,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,58916,ENSMUSG00000024471,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4233,cg08899075,0.00000316,0.00000472,0.670391039,0.503107652,gain,ns,-0.000000593,0.00000801,-0.074019908,0.941042284,neg,ns,-0.005550475,0.002346936,-2.364988232,0.018646259,neg,ns,1.729408298,-0.0000259,0.0000807,-0.321308688,0.748192995,neg,ns,0.830223996,Trio,Trio_threeUTR,15,27744152,27744201,27744152,27744153,50,+,CGTGTGTCACCAACATGGTGGAGATGTTGCTACTGCTGCTGCTTTCACTC,Promoter (<=1kb),15,27742266,27744164,1899,2,Trio-214,0,Trio-212;Trio-201;Trio-208;Trio-206;Trio-214;Trio-211;Trio-205,Trio;Trio;Trio;Trio;Trio;Trio;Trio,-1829;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,8,11,223435,ENSMUSG00000022263,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17485,cg03295083,0.0000172,0.00000304,5.645716194,3.72E-08,gain,yes,-0.000000383,0.00000517,-0.07398284,0.941071755,neg,ns,0.00661935,0.001514789,4.36981625,0.000017,pos,ns,4.769921812,-0.000178258,0.0000521,-3.421892296,0.000705328,neg,ns,0.058899426,Nrxn1,Nrxn1_fiveUTR,17,90455928,90455977,90455928,90455929,50,-,CGCTGGTGAAGCAAGGGGCTCTATGCAAATCTGCAGTCTCCAAACAGCAA,Promoter (<=1kb),17,90036896,90455950,419055,2,Nrxn1-213,0,Gm10493-201;Nrxn1-202;Nrxn1-207;Nrxn1-216;Nrxn1-204;Nrxn1-217;Nrxn1-209;Nrxn1-201;Nrxn1-213;Nrxn1-206;Nrxn1-221;Nrxn1-208;Nrxn1-222;Nrxn1-218;Nrxn1-226,Gm10493;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,27,18189,ENSMUSG00000024109,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17382,cg19539374,-0.00000292,0.00000165,-1.768253696,0.078001995,loss,ns,-0.000000207,0.00000281,-0.073916073,0.941124838,neg,ns,-0.000875634,0.000821802,-1.065504689,0.28747677,neg,ns,0.541397243,0.0000559,0.0000283,1.976321297,0.049004589,pos,ns,0.950254148,Ubap2l,Ubap2l_Exon,3,90000934,90000983,90000982,90000983,50,-,TGTTGGTCTGGGGCTTCTGCGGGATGGAGCTGGTCTGGCTACGTTGCCCG,"Exon (Ubap2l-202/Ubap2l, exon 28 of 28)",3,90000140,90052455,52316,2,Ubap2l-215,51472,Hax1-201;Hax1-205;Hax1-203;Hax1-202;Hax1-206;Hax1-209;Hax1-204;Hax1-207;Hax1-208;Hax1-210;Hax1-211;Hax1-212;Ubap2l-215;Ubap2l-201;Ubap2l-202;Ubap2l-208;Ubap2l-217;Ubap2l-223,Hax1;Hax1;Hax1;Hax1;Hax1;Hax1;Hax1;Hax1;Hax1;Hax1;Hax1;Hax1;Ubap2l;Ubap2l;Ubap2l;Ubap2l;Ubap2l;Ubap2l,-2237;-2268;-4981;-4664;-2257;-2248;-2314;-2545;-4598;-2254;-2154;-2572;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,15,74383,ENSMUSG00000042520,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1924,cg23612720,0.0000342,0.0000128,2.675864318,0.007849809,gain,ns,0.00000161,0.0000217,0.073834459,0.941189726,pos,ns,0.009351968,0.006370363,1.468043302,0.143106351,pos,ns,0.844341093,-0.000366518,0.000219076,-1.673014598,0.095333209,neg,ns,0.221319494,Gm3148,Gm3148_Intergenic_downstream,6,16333849,16333898,16333849,16333850,50,-,CGTTCAGGCACATCTGACTTTGATTAATTAGAGAGCTGCTTTTCTATTTC,Distal Intergenic,6,16237627,16238238,612,1,Gm3148-201,96271,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,6,100041116,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1405,cg00613562,0.00000368,0.00000185,1.986669884,0.047839103,gain,ns,-0.000000232,0.00000315,-0.073695228,0.941300424,neg,ns,0.00144527,0.000922122,1.567331292,0.118057437,pos,ns,0.927906649,-0.0000246,0.0000317,-0.776504276,0.438043357,neg,ns,0.037364589,Sulf1,Sulf1_fiveUTR,1,12692446,12692495,12692494,12692495,50,+,GGATTGGGCAGCCCGTCTTGACACACCACTGTGCTGAGTGCTTGAGGACG,Promoter (<=1kb),1,12692277,12861192,168916,1,Sulf1-202,169,Sulf1-202;Sulf1-203;Sulf1-205,Sulf1;Sulf1;Sulf1,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,5,240725,ENSMUSG00000016918,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
7094,cg23446961,0.00000931,0.0000116,0.803792704,0.422132622,gain,ns,-0.00000145,0.0000197,-0.073548898,0.941416768,neg,ns,-0.003956274,0.005766963,-0.686023843,0.49321082,neg,ns,0.306967405,-0.0000512,0.000198325,-0.258000288,0.796577878,neg,ns,0.67591393,Zfpm2,Zfpm2_Intron,15,40924140,40924189,40924188,40924189,50,-,TATCATTAGCTCGTTGTGTACATGAAATCCAGGGGTTAGAGCACCAAGCG,"Intron (Zfpm2-201/Zfpm2, intron 4 of 7)",15,40655035,41104592,449558,1,Zfpm2-201,269105,Zfpm2-201;Zfpm2-203,Zfpm2;Zfpm2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,41,22762,ENSMUSG00000022306,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3543,cg15664975,-0.0000012,0.000000421,-2.841476973,0.004788005,loss,ns,-5.25E-08,0.000000715,-0.073490852,0.941462919,neg,ns,0.0000889,0.000209395,0.424599796,0.671422974,pos,ns,0.173003803,-0.0000103,0.0000072,-1.423872885,0.155489016,neg,ns,0.00790555,E4f1,E4f1_fiveUTR,17,24455299,24455348,24455347,24455348,50,-,GCCGCAGGAAGATGGCGGATTTACGACCATGTCGTCATAACAACGGGCCG,Promoter (<=1kb),17,24443779,24455311,11533,2,E4f1-201,0,E4f1-207;E4f1-201;E4f1-202;E4f1-208;E4f1-204;E4f1-205,E4f1;E4f1;E4f1;E4f1;E4f1;E4f1,-13;0;0;-3820;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,1,13560,ENSMUSG00000024137,conserved gene but different region,17,24455044,24455508,465,*,465,54,0.67311828,1.025232729,0.116129032,4.52E-45,CpGisland,TRUE,U1,Pr-A
24646,cg17649419,0.00000643,0.0000025,2.573987063,0.010517603,gain,ns,0.000000311,0.00000424,0.073371975,0.941557437,pos,ns,0.001506436,0.001242518,1.212406375,0.226280034,pos,ns,0.645353764,0.0000137,0.0000427,0.32106898,0.748374464,pos,ns,0.939513181,R3hdm2,R3hdm2_Exon,10,127462180,127462229,127462180,127462181,50,+,CGATCTAGATCAGAGTTCCATTGCAGGATGGAAGGAGGAGCAAGTCAATA,"Exon (R3hdm2-212/R3hdm2, exon 12 of 27)",10,127380662,127499360,118699,1,R3hdm2-212,81518,R3hdm2-212;R3hdm2-202;R3hdm2-204;R3hdm2-201;R3hdm2-218;R3hdm2-208;R3hdm2-210;R3hdm2-205;R3hdm2-203;R3hdm2-211;R3hdm2-207;R3hdm2-216;R3hdm2-221,R3hdm2;R3hdm2;R3hdm2;R3hdm2;R3hdm2;R3hdm2;R3hdm2;R3hdm2;R3hdm2;R3hdm2;R3hdm2;R3hdm2;R3hdm2,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,8,71750,ENSMUSG00000025404,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22917,cg13889636,0.00000206,0.00000578,0.356997347,0.721336682,gain,ns,-0.00000072,0.00000982,-0.073267102,0.941640821,neg,ns,-0.004568348,0.002877488,-1.587616392,0.113392511,neg,ns,0.945415628,0.0000406,0.000099,0.410450483,0.681759059,pos,ns,0.86075464,Plekha7,Plekha7_Exon,7,116148258,116148307,116148306,116148307,50,+,TCCTGGGCCGACAGCCCCGTGCTGACTTCTTCAGCACTTTGTAAAGCACG,"Exon (Plekha7-219/Plekha7, exon 15 of 19)",7,116123485,116237812,114328,2,Plekha7-210,89505,Plekha7-210;Plekha7-203;Plekha7-201;Plekha7-205;Plekha7-202;Plekha7-207;Plekha7-206;Plekha7-219;Plekha7-213,Plekha7;Plekha7;Plekha7;Plekha7;Plekha7;Plekha7;Plekha7;Plekha7;Plekha7,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,233765,ENSMUSG00000045659,conserved gene and region,7,116148129,116148307,179,*,179,12,0.586592179,0.779956427,0.067039106,0.000000178,CpGisland,TRUE,U11,Tr-P
22269,cg23311255,-0.0000403,0.0000129,-3.125303408,0.001944351,loss,ns,0.0000016,0.0000219,0.073140066,0.941741827,pos,ns,-0.013414665,0.006410556,-2.092589914,0.037198648,neg,ns,1.42947285,0.000563604,0.000220458,2.556507738,0.011049224,pos,ns,0.767604006,Sox9,Sox9_Exon,11,112785160,112785209,112785160,112785161,50,-,CGAACGCACATCAAGACGGAGCAGCTGAGCCCCAGCCACTACAGCGAGCA,"Exon (Sox9-201/Sox9, exon 3 of 3)",11,112782224,112787760,5537,1,Sox9-201,2936,Sox9-201,Sox9,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,7,20682,ENSMUSG00000000567,mapped to different genes,11,112784687,112785225,539,*,539,42,0.667903525,0.727816358,0.077922078,1.77E-27,CpGisland,TRUE,U3,Pr-B
5682,cg16602826,-0.00000686,0.00000371,-1.850825723,0.065145757,loss,ns,0.00000046,0.0000063,0.073097001,0.941776069,pos,ns,0.00100569,0.001844665,0.54518841,0.586015966,pos,ns,0.232090551,0.0000539,0.0000634,0.849489322,0.39626462,pos,ns,0.960481078,Mapkap1,Mapkap1_Intron,2,34535396,34535445,34535444,34535445,50,-,ATCTCAGCATGAGAAGTCTTTATCCATCATCACTCATAATGAACAAGTCG,"Intron (Mapkap1-204/Mapkap1, intron 6 of 10)",2,34406862,34623475,216614,1,Mapkap1-204,128534,Mapkap1-204;Mapkap1-202;Mapkap1-201;Mapkap1-209;Mapkap1-203;Mapkap1-207,Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1;Mapkap1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,59,227743,ENSMUSG00000038696,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27602,cg15539292,-0.000000445,0.00000165,-0.269284731,0.787889725,loss,ns,0.000000205,0.00000281,0.073043926,0.941818269,pos,ns,0.00136334,0.000822244,1.658072132,0.098314401,pos,ns,1.007382862,-0.0000392,0.0000283,-1.385092099,0.167020211,neg,ns,0.96249351,Dedd,Dedd_threeUTR,1,171340917,171340966,171340917,171340918,50,+,CGCCAGTTTGAGCGCTTTAACCAGGCCAACACCATCCTCAAGTCCCGGGA,3' UTR,1,171329145,171342331,13187,1,Dedd-204,11772,Dedd-204;Dedd-203;Dedd-201;Dedd-209;Dedd-206;Dedd-208;Dedd-210;Dedd-202;Dedd-207;Dedd-205;Nit1-206;Nit1-203;Nit1-201;Nit1-205;Nit1-202;Nit1-208;Nit1-204;Nit1-207;Pfdn2-202;Pfdn2-201,Dedd;Dedd;Dedd;Dedd;Dedd;Dedd;Dedd;Dedd;Dedd;Dedd;Nit1;Nit1;Nit1;Nit1;Nit1;Nit1;Nit1;Nit1;Pfdn2;Pfdn2,0;0;0;0;0;10831;10562;0;0;0;0;0;0;0;0;0;0;4679;-4704;-4764,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,4,21945,ENSMUSG00000013973,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12339,cg13959016,-0.00000355,0.00000382,-0.930058747,0.353064342,loss,ns,-0.000000474,0.00000649,-0.072985435,0.941864776,neg,ns,-0.005476343,0.001901956,-2.879321171,0.004262618,neg,ns,2.370323576,0.00012572,0.0000654,1.922085637,0.055511331,pos,ns,0.89484824,Fign,Fign_threeUTR,2,63978874,63978923,63978874,63978875,50,-,CGCTGGACGAGCAGTGCAAACTCCTTGTCATTGAGACAGTAATTGTGCTG,3' UTR,2,63971507,64098012,126506,2,Fign-203,119089,Fign-203;Fign-201;Fign-202;Fign-204,Fign;Fign;Fign;Fign,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,14,84,60344,ENSMUSG00000075324,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24899,cg24129080,-0.000000345,0.000000617,-0.559653928,0.576119651,loss,ns,7.64E-08,0.00000105,0.072911956,0.941923201,pos,ns,-0.000810243,0.000307021,-2.639049429,0.008734032,neg,ns,2.058785245,0.0000193,0.0000106,1.829292381,0.068316254,pos,ns,0.98844189,Plpp4,Plpp4_Exon,7,129323372,129323421,129323372,129323373,50,-,CGATTTCTTTTACCGCTGCTTTCCAGATGGAGTGATGAACTCGGAAATGC,"Exon (Plpp4-201/Plpp4, exon 5 of 7)",7,129257031,129391412,134382,1,Plpp4-201,66341,Plpp4-201;Plpp4-204;Plpp4-202;Plpp4-203,Plpp4;Plpp4;Plpp4;Plpp4,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,6,381925,ENSMUSG00000070366,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2327,cg20239566,0.0000075,0.00000633,1.185671482,0.236660088,gain,ns,0.000000784,0.0000108,0.072911476,0.941923582,pos,ns,0.00000117,0.003149801,0.000371554,0.999703781,pos,ns,0.000128665,0.000130608,0.000108321,1.205743444,0.228835916,pos,ns,0.369585761,Meis1,Meis1_fiveUTR,11,19018618,19018667,19018666,19018667,50,-,GCTGTCAATCACAGGCGAGGTTGTCAACGTGGTGAATGAATGATCATCCG,Promoter (<=1kb),11,18879817,19018985,139169,2,Meis1-206,318,Meis1-206;Meis1-202;Meis1-209;Meis1-201;Meis1-208;Meis1-207;Meis1-204;Meis1-205,Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,7,88,17268,ENSMUSG00000020160,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
13958,cg18420597,-0.00000694,0.00000379,-1.830052054,0.068202272,loss,ns,-0.000000469,0.00000644,-0.072867849,0.941958271,neg,ns,-0.001456229,0.001887443,-0.771535121,0.440977519,neg,ns,0.35558355,0.00000963,0.0000649,0.148337851,0.882172587,pos,ns,0.92034777,Robo2,Robo2_Intergenic_downstream,16,73785011,73785060,73785059,73785060,50,-,GTATTACTAGATGCTTCCTTTAATTAATGCAACACTACTGCATTAGTCCG,Distal Intergenic,16,73894664,73899885,5222,2,Robo2-208,114874,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,11,268902,ENSMUSG00000052516,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22850,cg22825729,-0.0000032,0.00000155,-2.060312708,0.040202898,loss,ns,0.000000192,0.00000264,0.072867056,0.941958901,pos,ns,0.000493622,0.000772535,0.638963993,0.523318177,pos,ns,0.28123418,0.0000107,0.0000266,0.403269748,0.687027791,pos,ns,0.049655102,Unk,Unk_Exon,11,116030441,116030490,116030441,116030442,50,-,CGCTACCGCTCAGGTGCTGCAGGCACAGCCCGAGAAACCGCAGCACTACA,Promoter (<=1kb),11,116030322,116061214,30893,1,Unk-201,119,H3f3b-202;Unk-201;Unk-202;Unk-207,H3f3b;Unk;Unk;Unk,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,217331,ENSMUSG00000020770,mapped to different genes,11,116030277,116031081,805,*,805,67,0.626086957,0.849651066,0.083229814,2.24E-45,CpGisland,TRUE,U1,Pr-A
8200,cg05839622,0.00000672,0.00000321,2.091118851,0.03733127,gain,ns,-0.000000397,0.00000546,-0.072780674,0.942027586,neg,ns,0.003444433,0.001598342,2.155004283,0.031931297,pos,ns,1.495783439,-0.000124414,0.000055,-2.263432788,0.024300199,neg,ns,0.920619158,Kmt2a,Kmt2a_Exon,9,44846885,44846934,44846885,44846886,50,+,CGTTCTTCCCATGGTAAGGCACTCAGGGTGGGCATGTCATCAGGAAACAC,"Exon (Kmt2a-201/Kmt2a, exon 4 of 36)",9,44803355,44881296,77942,2,Kmt2a-201,34362,Kmt2a-201;Kmt2a-202;Kmt2a-205;Kmt2a-203;Kmt2a-206,Kmt2a;Kmt2a;Kmt2a;Kmt2a;Kmt2a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,10,214162,ENSMUSG00000002028,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21892,cg17833437,-0.00000329,0.00000106,-3.112274993,0.002029485,loss,ns,0.000000131,0.0000018,0.072772069,0.942034428,pos,ns,0.00050094,0.000526314,0.95179005,0.341944963,pos,ns,0.46604379,-0.0000198,0.0000181,-1.096492345,0.273714422,neg,ns,0.02674428,Cdkn2c,Cdkn2c_fiveUTR,4,109665236,109665285,109665236,109665237,50,-,CGGAGACTGACAGAAGGACTGGGATGGTTAATCTGGAGTAGAGCTTGGTA,Promoter (<=1kb),4,109660876,109665372,4497,2,Cdkn2c-201,87,Cdkn2c-201;Cdkn2c-202,Cdkn2c;Cdkn2c,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,8,13,12580,ENSMUSG00000028551,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
10103,cg17172351,-0.0000105,0.00000344,-3.046586273,0.002513491,loss,ns,0.000000424,0.00000585,0.072511956,0.942241252,pos,ns,0.000696465,0.001712888,0.406602684,0.684580392,pos,ns,0.164575544,-0.000112337,0.0000589,-1.90705059,0.057438205,neg,ns,0.927871058,Gm19197,Gm19197_Intergenic_downstream,17,52176717,52176766,52176765,52176766,50,+,TATTCATCTGCATGCCTCACAACGGTTGCTTAATTGCCTAAATCTTCCCG,Distal Intergenic,17,52008967,52009569,603,1,Gm19197-201,167750,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,11,100418416,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16955,cg00067701,0.0000575,0.0000106,5.447528645,0.000000104,gain,yes,-0.0000013,0.0000179,-0.072470392,0.942274302,neg,ns,0.015945419,0.00525505,3.034303903,0.002614995,pos,ns,2.582529079,-0.0000739,0.000180721,-0.409125203,0.682730295,neg,ns,0.329496427,Zfp423,Zfp423_threeUTR,8,87662295,87662344,87662343,87662344,50,-,TTTTAATCTCTGCCATTAATATTCATTTCCAGCTGCTTATAATAGCAGCG,3' UTR,8,87661810,87804439,142630,2,Zfp423-203,142095,Zfp423-203;Zfp423-202;Zfp423-201,Zfp423;Zfp423;Zfp423,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,53,94187,ENSMUSG00000045333,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17780,cg20196606,-0.00000236,0.00000121,-1.954703641,0.051516622,loss,ns,0.000000148,0.00000205,0.072467655,0.942276478,pos,ns,0.000353439,0.000599844,0.589217626,0.556144429,pos,ns,0.254812408,-0.00000894,0.0000206,-0.433455721,0.66498519,neg,ns,0.974665591,Son,Son_threeUTR,16,91662724,91662773,91662772,91662773,50,-,CTTTCGCATCAACATTTCGGGTTTTGGCTGTTTGGTACCAGCCATTGGCG,3' UTR,16,91647506,91679207,31702,1,Son-203,15218,Son-203;Son-204;Son-202;Son-208;Son-201;Son-205;Son-212;Son-207,Son;Son;Son;Son;Son;Son;Son;Son,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,14,31,20658,ENSMUSG00000022961,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25052,cg22075177,-0.00000143,0.00000167,-0.857758487,0.391688499,loss,ns,0.000000205,0.00000283,0.072426512,0.942309193,pos,ns,0.000834247,0.000828743,1.00664243,0.314891718,pos,ns,0.501838762,-0.00000153,0.0000285,-0.053858429,0.957082649,neg,ns,0.066764414,Srsf4,Srsf4_Exon,4,131873821,131873870,131873821,131873822,50,+,CGCTTCTTTAAGGGCTACGGGAAGATCCTGGAGGTGGATCTGAAGAACGG,Promoter (<=1kb),4,131873617,131901706,28090,1,Srsf4-202,204,Srsf4-202;Srsf4-203,Srsf4;Srsf4,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,57317,ENSMUSG00000028911,conserved gene and region,4,131873392,131874484,1093,*,1093,132,0.705397987,0.975101379,0.120768527,7.27E-112,CpGisland,TRUE,U1,Pr-A
22451,cg05822075,0.00000938,0.00000338,2.780100057,0.005766368,gain,ns,-0.000000414,0.00000573,-0.072244705,0.942453757,neg,ns,0.003168603,0.001679851,1.886240093,0.060197186,pos,ns,1.220423807,-0.000118493,0.0000578,-2.051120948,0.041095368,neg,ns,0.498769585,Wwox,Wwox_Intron,8,114592074,114592123,114592122,114592123,50,+,ATCTAGTGTAATGTGAAGTGACAGTCAAAATTACAGCTTTTCTCTTGCCG,"Intron (Wwox-201/Wwox, intron 5 of 8)",8,114439655,115352708,913054,1,Wwox-201,152419,Wwox-201;Wwox-207;Wwox-203,Wwox;Wwox;Wwox,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,32,32,80707,ENSMUSG00000004637,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10022,cg27239140,0.0000659,0.000012,5.491894373,8.29E-08,gain,yes,-0.00000147,0.0000204,-0.072222245,0.942471616,neg,ns,0.021018833,0.005973591,3.518625994,0.000498735,pos,ns,3.302130361,-0.000322228,0.000205431,-1.568541454,0.11777496,neg,ns,0.33019036,Maml3,Maml3_Intron,3,51889156,51889205,51889156,51889157,50,+,CGAACAACTAAAAGGAAAATCTGATTCGGCTCAGCATCACGTGGAGGACA,"Intron (Maml3-202/Maml3, intron 1 of 4)",3,51685907,52105076,419170,2,Maml3-202,215871,Maml3-202,Maml3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,32,433586,ENSMUSG00000061143,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16678,cg00116234,0.0000317,0.00000694,4.564321632,0.00000723,gain,ns,0.000000849,0.0000118,0.07205982,0.94260077,pos,ns,0.009477924,0.00345271,2.745067957,0.006402794,pos,ns,2.193630486,-0.00015477,0.000118738,-1.303454854,0.19338672,neg,ns,0.057321886,Adamtsl1,Adamtsl1_fiveUTR,4,86054022,86054071,86054070,86054071,50,-,TCAGTGTCCGATTCTGATTCCGGCAAGGATCCAAGCATGGAATGCTGCCG,5' UTR,4,85514172,86110862,596691,1,Adamtsl1-212,539850,Adamtsl1-212;Adamtsl1-206;Adamtsl1-203;Adamtsl1-201;Adamtsl1-209;Adamtsl1-204;Adamtsl1-211,Adamtsl1;Adamtsl1;Adamtsl1;Adamtsl1;Adamtsl1;Adamtsl1;Adamtsl1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,10,77739,ENSMUSG00000066113,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10218,cg09019552,0.000019,0.00000229,8.297635456,3.30E-15,gain,yes,-0.00000028,0.00000389,-0.072015556,0.942635967,neg,ns,0.003015632,0.001139377,2.646737407,0.008542316,pos,ns,2.068424344,-0.0000671,0.0000392,-1.71290619,0.087729654,neg,ns,0.015342799,Hoxa11,Hoxa11_Exon,6,52245500,52245549,52245548,52245549,50,-,ATTTAGTGGCGGGCTCAATGGCGTACTCTCTGAAGGTCACTTCGCGCACG,Promoter (<=1kb),6,52242106,52245810,3705,2,Hoxa11-201,261,Hoxa10-201;Hoxa10-204;Hoxa11-201;Hoxa11-202,Hoxa10;Hoxa10;Hoxa11;Hoxa11,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,15,18,15396,ENSMUSG00000038210,mapped to different genes,6,52244948,52245549,602,*,602,70,0.674418605,1.022616968,0.11627907,2.62E-58,CpGisland,TRUE,NA,NRS
25311,cg04641831,-0.00000494,0.00000188,-2.62825713,0.009009678,loss,ns,-0.00000023,0.00000319,-0.07189303,0.942733398,neg,ns,-0.0000249,0.000935289,-0.026589016,0.978804642,neg,ns,0.00930398,-0.0000286,0.0000322,-0.889090264,0.374643956,neg,ns,0.953924752,Dock1,Dock1_Exon,7,134756863,134756912,134756863,134756864,50,+,CGTTTTTCACCCAGGGTGGCAGGGGAGAATGACTTCCTTCAGACTGTTAT,"Exon (Dock1-205/Dock1, exon 12 of 27)",7,134670654,134876943,206290,1,Dock1-205,86209,Dock1-205;Dock1-206;Dock1-201;Dock1-204;Dock1-203,Dock1;Dock1;Dock1;Dock1;Dock1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,5,330662,ENSMUSG00000058325,conserved gene and region,7,134756817,134756864,48,*,48,7,0.604166667,1.647058824,0.145833333,0.000000957,CpGisland,TRUE,U10,Tr-S
5913,cg01206394,-0.000117744,0.0000166,-7.084020229,9.45E-12,loss,yes,-0.00000203,0.0000282,-0.071870321,0.942751455,neg,ns,-0.024027583,0.008272472,-2.904522693,0.003942483,neg,ns,2.404230187,0.000546089,0.00028449,1.919539497,0.055833783,pos,ns,0.650335141,Gm7733,Gm7733_Intergenic_downstream,3,35225436,35225485,35225436,35225437,50,+,CGGAAATTCAGTTGAATAGAGCCCTAAATGTTTTTTTGTTTGACATTCAT,Distal Intergenic,3,35536882,35537800,919,2,Gm7733-201,312315,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,14,15,665655,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24195,cg14833518,-0.00000681,0.00000195,-3.49351388,0.000546096,loss,ns,0.000000238,0.00000331,0.071840563,0.942775118,pos,ns,0.001601395,0.000969656,1.651508425,0.099647372,pos,ns,1.001534152,-0.0000402,0.0000333,-1.205455693,0.22894676,neg,ns,0.043613234,Tmem158,Tmem158_Exon,9,123259876,123259925,123259876,123259877,50,+,CGGCCACGCTCCACACCACGATGACCAGGGTCATGAAGCAGGCCACCAGC,Promoter (<=1kb),9,123259053,123260764,1712,2,Tmem158-201,839,Tmem158-201,Tmem158,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,72309,ENSMUSG00000054871,conserved gene and region,9,123259568,123259967,400,*,400,46,0.71,0.919080919,0.115,2.99E-38,CpGisland,TRUE,U3,Pr-B
10664,cg01403803,0.0000319,0.0000178,1.790130538,0.074408741,gain,ns,-0.00000217,0.0000302,-0.071697095,0.942889201,neg,ns,-0.009980946,0.008861739,-1.126296482,0.26091118,neg,ns,0.583507312,0.000201284,0.000304754,0.660480629,0.509435925,pos,ns,0.418209943,Zfp608,Zfp608_Intron,18,54902146,54902195,54902146,54902147,50,-,CGTTCCAGAGTCCCTGATGTAGCACAAATATATAATTAAAATTGCTTGAA,"Intron (Zfp608-201/Zfp608, intron 3 of 9)",18,54888048,54990166,102119,2,Zfp608-201,87971,Zfp608-201;Zfp608-204;Zfp608-203,Zfp608;Zfp608;Zfp608,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,32,269023,ENSMUSG00000052713,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
22075,cg01173053,-0.0000039,0.00000279,-1.395463701,0.163874833,loss,ns,-0.00000034,0.00000475,-0.071600697,0.942965856,neg,ns,0.000229086,0.00139056,0.164743879,0.869252949,pos,ns,0.060853827,-0.0000705,0.0000478,-1.473884727,0.141527351,neg,ns,0.025245528,Wdr20,Wdr20_Exon,12,110738175,110738224,110738175,110738176,50,+,CGTCTCCTTCGTAAACCTCAACGACCAGTCTGGCAACGGCGACCGCCTCT,Promoter (<=1kb),12,110738209,110793316,55108,1,Wdr20-207,0,Wdr20-205;Wdr20-204;Wdr20-203;Wdr20-201;Wdr20-202;Wdr20-207,Wdr20;Wdr20;Wdr20;Wdr20;Wdr20;Wdr20,0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,8,69641,ENSMUSG00000037957,conserved gene and region,12,110737489,110738785,1297,*,1297,129,0.68080185,0.867167335,0.099460293,3.23E-97,CpGisland,TRUE,U1,Pr-A
8807,cg02925207,0.000000529,0.0000027,0.195959922,0.844769925,gain,ns,-0.000000328,0.00000458,-0.071530298,0.943021837,neg,ns,0.0000754,0.00134291,0.056160519,0.955250112,pos,ns,0.019882903,-0.0000551,0.0000462,-1.192876496,0.233829948,neg,ns,0.959240344,Sorbs2,Sorbs2_Exon,8,45783549,45783598,45783549,45783550,50,-,CGCATAAATCCAGATGACATAGATTTAGAAAATGAGCCCTGGTATAAATT,"Exon (Sorbs2-201/Sorbs2, exon 14 of 26)",8,45507788,45827906,320119,1,Sorbs2-201,275761,Sorbs2-201;Sorbs2-218;Sorbs2-209;Sorbs2-202;Sorbs2-231;Sorbs2-215;Sorbs2-228;Sorbs2-220;Sorbs2-234;Sorbs2-207;Sorbs2-204;Sorbs2-211;Sorbs2-221;Sorbs2-229;Sorbs2-225;Sorbs2-236,Sorbs2;Sorbs2;Sorbs2;Sorbs2;Sorbs2;Sorbs2;Sorbs2;Sorbs2;Sorbs2;Sorbs2;Sorbs2;Sorbs2;Sorbs2;Sorbs2;Sorbs2;Sorbs2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;-1144,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,4,234214,ENSMUSG00000031626,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16271,cg06233958,-0.0000195,0.0000146,-1.332739095,0.183596155,loss,ns,0.00000178,0.0000248,0.071487781,0.943055646,pos,ns,-0.009387584,0.007275419,-1.290315229,0.197902835,neg,ns,0.703547985,0.000378292,0.000250201,1.511952014,0.131564791,pos,ns,0.810207507,Abcg8,Abcg8_Intergenic_downstream,17,84703221,84703270,84703269,84703270,50,+,TGGAAACACTCCCATGCATGATTGTACAACAGGAAAGCGATAAATTACCG,Downstream (1-2kb),17,84683131,84698963,15833,1,Abcg8-203,20090,Abcg8-202;Abcg8-201;Abcg8-203;Lrpprc-201,Abcg8;Abcg8;Abcg8;Lrpprc,26919;20100;20090;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,2,2,67470,ENSMUSG00000024254,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16621,cg26553785,0.0000116,0.0000126,0.91670427,0.360010217,gain,ns,-0.00000153,0.0000214,-0.071414212,0.943114149,neg,ns,0.001982106,0.00628267,0.315487888,0.752603525,pos,ns,0.123433752,-0.0000935,0.00021606,-0.432621617,0.66559049,neg,ns,0.896214822,Bcas3,Bcas3_Intron,11,85641062,85641111,85641062,85641063,50,+,CGCTGGCCACAAACGGACACTGTTTCTCCTAAACAACTCCCTTGGTGCAG,"Intron (Bcas3-205/Bcas3, intron 24 of 27)",11,85353167,85826058,472892,1,Bcas3-205,287895,Bcas3-205;Bcas3-206;Bcas3-201;Bcas3-202;Bcas3-216;Bcas3-212;Bcas3-203;Bcas3-207,Bcas3;Bcas3;Bcas3;Bcas3;Bcas3;Bcas3;Bcas3;Bcas3,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,24,192197,ENSMUSG00000059439,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21368,cg07320797,-0.0000408,0.00000993,-4.11350043,0.00005,loss,ns,-0.0000012,0.0000169,-0.071400159,0.943125324,neg,ns,-0.010698145,0.004942474,-2.164532322,0.031186571,neg,ns,1.506032369,0.000232958,0.000169971,1.370574817,0.17149912,pos,ns,0.676470013,Glis1,Glis1_Intron,4,107502519,107502568,107502519,107502520,50,+,CGTGTTCTACAGAAGTCCAATAAATCTGCAGTCTGTCTTCCTGGTAATCC,"Intron (Glis1-205/Glis1, intron 2 of 2)",4,107434617,107563900,129284,1,Glis1-205,67902,Glis1-205;Glis1-201;Glis1-202,Glis1;Glis1;Glis1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,11,230587,ENSMUSG00000034762,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17731,cg00306239,0.00000577,0.00000399,1.446928563,0.148927338,gain,ns,0.000000483,0.00000678,0.071275622,0.943224357,pos,ns,-0.002463465,0.00198588,-1.240490521,0.21573205,neg,ns,0.666085331,0.0000659,0.0000683,0.965223388,0.335185298,pos,ns,0.906975768,Zic4,Zic4_Intron,9,91531459,91531508,91531459,91531460,50,-,CGAGTAATGGAAAAAGAAGCAGATGGAGCATGAGTGTACATTAAACAGTA,"Intron (Gm29478-201/Gm29478-201, intron 1 of 2)",9,91382410,91388044,5635,1,Zic4-202,149098,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,55,22774,ENSMUSG00000036972,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25162,cg27443693,-0.0000061,0.00000601,-1.014866363,0.310960956,loss,ns,0.000000728,0.0000102,0.071217682,0.943270431,pos,ns,0.002442505,0.002993523,0.815929853,0.415166748,pos,ns,0.381777438,-0.000101951,0.000102947,-0.990325481,0.322787399,neg,ns,0.829216874,Gpr3,Gpr3_Intergenic_downstream,4,133204634,133204683,133204634,133204635,50,-,CGGAAGCTGTGAGCCCGTGAACTCATCTTATATTAATAGCTACTGTCTCC,Distal Intergenic,4,133209340,133211857,2518,2,Gpr3-202,7223,Gpr3-202;Wasf2-201,Gpr3;Wasf2,0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,3,14748,ENSMUSG00000049649,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
334,cg19291759,0.0000248,0.00000514,4.834898173,0.0000021,gain,ns,-0.000000621,0.00000873,-0.071190905,0.943291725,neg,ns,0.007371021,0.002557302,2.882342489,0.004223026,pos,ns,2.374376211,-0.000303617,0.0000879,-3.452335671,0.000632971,neg,ns,0.1023843,Zfhx4,Zfhx4_Promoter,3,5210382,5210431,5210382,5210383,50,+,CGGTGATTTGATAGGCTTGTCGGGTTGCCATGGTGTTGACTTCTTGCCTC,Promoter (8-9kb),3,5218526,5413165,194640,1,Zfhx4-203,-8095,NA,NA,NA,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,10,77,80892,ENSMUSG00000025255,mapped to different genes,3,5210231,5210403,173,*,173,10,0.554913295,0.752173913,0.057803468,0.00000971,CpGisland,TRUE,NA,NRS
26431,cg03335775,0.00016006,0.0000229,6.99064279,1.68E-11,gain,yes,0.00000277,0.0000389,0.071141683,0.943330867,pos,ns,0.026440183,0.011395699,2.320189633,0.020979629,pos,ns,1.6782022,-0.00066493,0.000391897,-1.696693972,0.090758314,neg,ns,0.614474182,Foxa2,Foxa2_Intergenic_downstream,2,147932284,147932333,147932332,147932333,50,-,AAGTTTACTGAATGTCCCATGGCCAAATATAATAAAACCTTAAGTAAGCG,Distal Intergenic,2,148044240,148045464,1225,2,Foxa2-203,113180,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,25,15376,ENSMUSG00000037025,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19251,cg15359095,0.0000219,0.00000772,2.841544138,0.004787022,gain,ns,-0.000000932,0.0000131,-0.071030221,0.943419505,neg,ns,0.00840168,0.003842688,2.186406946,0.02953327,pos,ns,1.529688461,-0.000244602,0.00013215,-1.850942305,0.065128929,neg,ns,0.818361969,Wnt11,Wnt11_threeUTR,7,98847370,98847419,98847370,98847371,50,+,CGATGCTCCTATGAAGGTGAAAAAAACAGGATCCCAAGCCAATAAACTGA,3' UTR,7,98835112,98853811,18700,1,Wnt11-202,12258,Wnt11-203;Wnt11-202;Wnt11-201;Wnt11-205;Wnt11-204;Wnt11-206,Wnt11;Wnt11;Wnt11;Wnt11;Wnt11;Wnt11,12258;0;0;0;0;-387,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,6,22411,ENSMUSG00000015957,conserved gene but different region,7,98847156,98847371,216,*,216,17,0.689814815,0.675,0.078703704,1.63E-11,CpGisland,TRUE,U11,Tr-P
11551,cg26212180,0.0000248,0.00000797,3.105041946,0.00207822,gain,ns,-0.00000096,0.0000135,-0.070827977,0.943580335,neg,ns,-0.00542335,0.003968809,-1.366492966,0.172774592,neg,ns,0.762520124,0.000271595,0.000136487,1.989893903,0.047480823,pos,ns,0.131066128,Vax1,Vax1_Promoter,19,59170467,59170516,59170515,59170516,50,-,TTCGGTTACCTCATGAATACACTAAATTGTTTGGATAATATATCAGATCG,Promoter (<=1kb),19,59166187,59170056,3870,2,Vax1-201,-460,Vax1-201;Vax1-202,Vax1;Vax1,0;-3487,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,12,18,22326,ENSMUSG00000006270,conserved gene and region,19,59170133,59170516,384,*,384,41,0.619791667,1.113043478,0.106770833,1.08E-32,CpGisland,TRUE,NA,NRS
23716,cg04963221,0.0000371,0.00000548,6.767474954,6.55E-11,gain,yes,-0.00000066,0.00000931,-0.070817897,0.943588351,neg,ns,-0.003602558,0.002728757,-1.320219253,0.187735782,neg,ns,0.726452943,0.0000244,0.0000938,0.26033697,0.794776693,pos,ns,0.911684949,Hivep3,Hivep3_Exon,4,120122998,120123047,120122998,120122999,50,+,CGTCCGGCCCTATGTGTGCAAGCACTGTCACTTTGCTTTTAAAACCAAAG,"Exon (Hivep3-202/Hivep3, exon 6 of 9)",4,119814495,120138045,323551,1,Hivep3-202,308503,Hivep3-202;Hivep3-209,Hivep3;Hivep3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,8,16656,ENSMUSG00000028634,conserved gene and region,4,120122884,120123003,120,*,120,9,0.533333333,1.071428571,0.075,0.0000042,CpGisland,TRUE,NA,NRS
40,cg27369572,-0.0000099,0.0000024,-4.125954415,0.0000475,loss,ns,0.000000289,0.00000408,0.070810763,0.943594024,pos,ns,-0.000806369,0.001194798,-0.674899506,0.50024265,neg,ns,0.300819283,0.000041,0.0000411,0.997837142,0.31913657,pos,ns,0.926259371,Smtn,Smtn_Exon,11,3520795,3520844,3520843,3520844,50,+,GCCCCTTCTGGACCAGACAGCGGTAGAATTCCTGGATGTACGTGTACACG,"Exon (Smtn-201/Smtn, exon 8 of 9)",11,3517523,3527937,10415,2,Smtn-201,7093,Selenom-202;Selenom-203;Selenom-201;Smtn-201;Smtn-204;Smtn-203;Smtn-208;Smtn-202;Smtn-210;Smtn-206,Selenom;Selenom;Selenom;Smtn;Smtn;Smtn;Smtn;Smtn;Smtn;Smtn,6111;6093;5928;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,6,29856,ENSMUSG00000020439,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19192,cg19568514,-0.00000923,0.00000269,-3.436223505,0.000670354,loss,ns,-0.000000323,0.00000456,-0.070730891,0.943657542,neg,ns,-0.001292244,0.001337,-0.966525448,0.334534729,neg,ns,0.47555879,0.0000394,0.000046,0.856593148,0.392331435,pos,ns,0.936477488,Gm32308,Gm32308_Intergenic_downstream,6,98768285,98768334,98768285,98768286,50,-,CGGGCTGTATTACTGCAATTCAATATATGTAAATAAGATAACTGGCTAAT,Distal Intergenic,6,98757749,98758028,280,1,Gm32308-201,10585,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,10,102634810,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10699,cg16997290,0.0000223,0.0000175,1.275811093,0.202977425,gain,ns,0.0000021,0.0000297,0.070704668,0.943678396,pos,ns,0.020920315,0.008698812,2.404962381,0.016760044,pos,ns,1.775724856,-0.000587695,0.000299151,-1.964541575,0.050360307,neg,ns,0.15778852,Zfp608,Zfp608_Intron,18,54990447,54990496,54990495,54990496,50,+,GAAAATCTGGGCTGGATTCCGCCTGTTAGTCGGGAAGTGGCATTTTTCCG,"Intron (Gm4221-203/Gm4221-203, intron 1 of 1)",18,54888723,54992555,103833,2,Zfp608-203,2059,Zfp608-201;Zfp608-203,Zfp608;Zfp608,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,32,269023,ENSMUSG00000052713,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
22214,cg04795810,-0.0000242,0.00000774,-3.127608847,0.001929634,loss,ns,0.000000925,0.0000131,0.070416638,0.943907453,pos,ns,0.001221339,0.003849987,0.317232101,0.751281042,pos,ns,0.12419757,-0.000484767,0.000132401,-3.661361019,0.000294866,neg,ns,0.807966686,Gm11679,Gm11679_Intergenic_downstream,11,111914062,111914111,111914062,111914063,50,+,CGGCTCTGAAATTTGATTCAGGCACCAGATTATGAATAGATTTAACTAGT,Distal Intergenic,11,112042800,112043578,779,2,Gm11679-201,129467,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,7,100504331,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18954,cg11352219,-0.000056,0.0000139,-4.033755978,0.0000692,loss,ns,0.00000166,0.0000236,0.070412291,0.943910909,pos,ns,0.008716775,0.00690565,1.262267164,0.207801451,pos,ns,0.682351425,-0.000867232,0.000237485,-3.651736138,0.000305664,neg,ns,0.611957073,Dach1,Dach1_Intron,14,98019216,98019265,98019264,98019265,50,-,CGTTACCTGCTTCTTCATATTAATATCTATACACAGTTTGAATTGCCTCG,"Intron (Dach1-201/Dach1, intron 1 of 10)",14,97786853,98169543,382691,2,Dach1-201,150278,Dach1-201;Dach1-202;Dach1-203,Dach1;Dach1;Dach1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,76,13134,ENSMUSG00000055639,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17894,cg03097155,0.0000805,0.00000781,10.31168175,1.25E-21,gain,yes,-0.000000934,0.0000133,-0.070402071,0.943919037,neg,ns,0.008972779,0.003887083,2.308357641,0.021637076,pos,ns,1.664801439,-0.0000291,0.000133676,-0.217816075,0.827715722,neg,ns,0.197707714,Irx5,Irx5_Intron,8,92366754,92366803,92366754,92366755,50,+,CGCTAAACTGAAATTACTGTCTTTTCAGGGGCTAATTTGTGTAACTCCCA,"Intron (Irx5-202/Irx5, intron 4 of 4)",8,92357625,92376286,18662,1,Irx5-202,9129,Irx5-202,Irx5,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,30,54352,ENSMUSG00000031737,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
156,cg19414994,0.0000104,0.00000515,2.024961366,0.043728136,gain,ns,0.000000616,0.00000876,0.070338025,0.94396997,pos,ns,-0.001127991,0.002565025,-0.439758307,0.660418585,neg,ns,0.180180713,-0.0000848,0.0000882,-0.961603972,0.336998022,neg,ns,0.797261653,Gria4,Gria4_Exon,9,4424398,4424447,4424446,4424447,50,-,AACCAGAATGTAGAAGACGCCTGCTACATTGCTCAGGCTCAAGGCACTCG,"Exon (Gria4-202/Gria4, exon 16 of 17)",9,4417896,4796142,378247,2,Gria4-202,371695,Gria4-202;Gria4-204;Gria4-201,Gria4;Gria4;Gria4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,16,18,14802,ENSMUSG00000025892,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20441,cg15648389,0.000103951,0.00000557,18.64948695,1.41E-52,gain,yes,-0.000000666,0.00000947,-0.070302531,0.943998197,neg,ns,0.011914508,0.002774196,4.294760177,0.0000234,pos,ns,4.630314908,-0.0000885,0.0000954,-0.92739237,0.354444319,neg,ns,0.107852799,Hoxc4,Hoxc4_threeUTR,15,103035772,103035821,103035772,103035773,50,+,CGCTGTGCCTCTCTGAGAGGCAGATCAAAATCTGGTTCCAAAACCGTCGC,3' UTR,15,103018934,103036405,17472,1,Hoxc4-202,16838,Hoxc4-202;Hoxc4-201,Hoxc4;Hoxc4,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,17,91,15423,ENSMUSG00000075394,conserved gene but different region,15,103035816,103035967,152,*,152,15,0.677631579,0.904761905,0.098684211,1.14E-11,CpGisland,TRUE,U13,Hc-P
9967,cg22569813,-0.00000365,0.00000153,-2.390124091,0.0174396,loss,ns,-0.000000182,0.00000259,-0.070212043,0.94407016,neg,ns,0.001990974,0.000759479,2.621499349,0.009186228,pos,ns,2.036862784,-0.0000959,0.0000261,-3.669831656,0.00028566,neg,ns,0.95712482,Satb1,Satb1_Intron,17,51761478,51761527,51761478,51761479,50,+,CGATACTCGACAGTTCAGCACAAGATCAGTGACATTCTGTCTCATTAGAA,"Intron (Satb1-208/Satb1, intron 9 of 10)",17,51736187,51832672,96486,2,Satb1-208,71145,Satb1-208;Satb1-213;Satb1-204;Satb1-214;Satb1-203;Satb1-211;Satb1-207,Satb1;Satb1;Satb1;Satb1;Satb1;Satb1;Satb1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,28,36,20230,ENSMUSG00000023927,conserved gene and region,17,51761281,51761486,206,*,206,11,0.509708738,0.825801749,0.053398058,0.00000611,CpGisland,TRUE,U15,NS
2097,cg10440012,0.00010237,0.00000821,12.46913989,3.37E-29,gain,yes,0.000000979,0.0000139,0.070189064,0.944088435,pos,ns,0.013668123,0.004086132,3.345002763,0.000923899,pos,ns,3.034375721,-0.000260296,0.000140522,-1.852351533,0.064925806,neg,ns,0.098345741,Skida1,Skida1_Exon,2,18048252,18048301,18048300,18048301,50,-,AGAGGGCAAACATTTGCTTCCCTTTAATGATGAGGTAGCCGAGCCTCACG,Promoter (<=1kb),2,18044083,18049051,4969,2,Skida1-202,750,Skida1-205;Skida1-202;Skida1-201;Skida1-203;Skida1-204,Skida1;Skida1;Skida1;Skida1;Skida1,0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,31,72668,ENSMUSG00000054074,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
652,cg06803118,-0.0000109,0.00000761,-1.427932932,0.154317793,loss,ns,0.000000906,0.0000129,0.070079086,0.944175898,pos,ns,0.014677701,0.003788709,3.874063488,0.000130618,pos,ns,3.883997389,-0.000624555,0.000130293,-4.793449334,0.00000255,neg,ns,0.828133779,Zc2hc1a,Zc2hc1a_Intron,3,7535901,7535950,7535949,7535950,50,-,ACCTTTATATATTTTAATAGTAATATGGACAAGTTAGGCCCTCCACTTCG,"Intron (Zc2hc1a-201/Zc2hc1a, intron 7 of 8)",3,7503483,7553836,50354,1,Zc2hc1a-201,32418,Zc2hc1a-201;Zc2hc1a-203;Zc2hc1a-202,Zc2hc1a;Zc2hc1a;Zc2hc1a,0;0;-2910,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,67306,ENSMUSG00000043542,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27234,cg16930816,-0.00000218,0.00000253,-0.864256198,0.388115401,loss,ns,0.000000301,0.00000429,0.069977753,0.944256486,pos,ns,-0.000194074,0.001258276,-0.15423833,0.877522185,neg,ns,0.056741895,-0.000021,0.0000433,-0.485776553,0.62746877,neg,ns,0.948951491,Klhl20,Klhl20_Exon,1,161109733,161109782,161109781,161109782,50,+,TCTCCAAGGGTGCAGCGGCTTGTTACATCCATTCCAGTCTCTCCTGGTCG,"Exon (Klhl20-201/Klhl20, exon 3 of 12)",1,161088375,161131511,43137,2,Klhl20-201,21729,Klhl20-201;Klhl20-203;Klhl20-202;Klhl20-205;Klhl20-204,Klhl20;Klhl20;Klhl20;Klhl20;Klhl20,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,226541,ENSMUSG00000026705,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24945,cg18063694.1,0.0000105,0.00000629,1.664068471,0.097109197,gain,ns,0.000000747,0.0000107,0.06991295,0.944308023,pos,ns,-0.007133168,0.00313187,-2.277606967,0.023430684,neg,ns,1.630215025,0.000137412,0.000107705,1.27582264,0.202973348,pos,ns,0.804007128,Hcrtr1,Hcrtr1_Exon,4,130135818,130135867,130135866,130135867,50,+,TGCTCTTGAACAATAGTGGGTGGCAGATGGCATACCAGCGGTCCAGGGCG,"Exon (Hcrtr1-203/Hcrtr1, exon 5 of 9)",4,130130217,130138551,8335,2,Hcrtr1-203,2684,Hcrtr1-203;Hcrtr1-201;Hcrtr1-202;Hcrtr1-204,Hcrtr1;Hcrtr1;Hcrtr1;Hcrtr1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,230777,ENSMUSG00000028778,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16559,cg23195996,0.0000692,0.0000083,8.339527139,2.47E-15,gain,yes,0.000000985,0.0000141,0.069902671,0.944316198,pos,ns,0.010120791,0.004130021,2.450542304,0.014816449,pos,ns,1.829255876,-0.000169203,0.000142031,-1.191306744,0.234444486,neg,ns,0.241816876,Camkmt,Camkmt_Intron,17,85454787,85454836,85454835,85454836,50,-,CGTAACCAGCTGGAGGACTGTAAGACGCCTGATAATGCCGCTCTTTTCCG,"Intron (Camkmt-201/Camkmt, intron 10 of 10)",17,85090552,85458588,368037,1,Camkmt-201,364235,Camkmt-201,Camkmt,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,41,44,73582,ENSMUSG00000071037,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
16692,cg10929615,-0.00000408,0.00000184,-2.21294158,0.027629907,loss,ns,0.000000219,0.00000313,0.069878304,0.944335576,pos,ns,0.000244828,0.00091697,0.266996998,0.789649,pos,ns,0.102565911,-0.0000316,0.0000315,-1.00321027,0.316541838,neg,ns,0.965051929,Ift43,Ift43_Intron,12,86115992,86116041,86116040,86116041,50,-,TCTATCACTCCTAATTGACACTAAATGATCTGTCAGTTTATTGATGAACG,"Intron (Ift43-201/Ift43, intron 3 of 7)",12,86082563,86162458,79896,1,Ift43-201,33429,Ift43-201;Ift43-205;Ift43-206;Ift43-207;Ift43-203,Ift43;Ift43;Ift43;Ift43;Ift43,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,5,76411,ENSMUSG00000007867,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11386,cg00325217,0.0000047,0.00000355,1.3247213,0.186239302,gain,ns,-0.000000421,0.00000603,-0.069721312,0.944460432,neg,ns,-0.00353526,0.00176733,-2.000339307,0.046335573,neg,ns,1.33408546,-0.0000179,0.0000608,-0.293838465,0.769077974,neg,ns,0.857673155,Galnt5,Galnt5_Intergenic_upstream,2,57907021,57907070,57907069,57907070,50,+,CTTCCCACAACAAACACATTTGATGCTCATACATGGTCCCTTTCTTGCCG,Distal Intergenic,2,57997884,58039878,41995,1,Galnt5-201,-90814,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,8,241391,ENSMUSG00000026828,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7740,cg01676132,-0.00000138,0.0000022,-0.624451668,0.532790299,loss,ns,0.000000261,0.00000375,0.069655047,0.944513132,pos,ns,0.001941213,0.001097251,1.7691614,0.077850132,pos,ns,1.108740647,-0.000057,0.0000377,-1.509847891,0.132100805,neg,ns,0.950789561,Clta,Clta_Exon,4,44030200,44030249,44030248,44030249,50,+,CCTCTTGCTGTCTAGGGTGGCAGATGAAGCTTTCTACAAACAACCCTTCG,"Exon (Clta-204/Clta, exon 5 of 6)",4,44004452,44032846,28395,1,Clta-202,25748,Clta-202;Clta-203;Clta-206;Clta-204;Clta-205;Clta-201;Gne-201,Clta;Clta;Clta;Clta;Clta;Clta;Gne,0;0;0;0;0;0;53928,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,6,12757,ENSMUSG00000028478,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13991,cg16487351,-0.00000168,0.00000143,-1.177650918,0.239839102,loss,ns,-0.000000169,0.00000243,-0.069568766,0.944581752,neg,ns,-0.000904935,0.00071198,-1.27101195,0.204677303,neg,ns,0.688930315,0.0000321,0.0000245,1.310509444,0.190993648,pos,ns,0.041966242,Usp46,Usp46_fiveUTR,5,74068255,74068304,74068303,74068304,50,-,TACAGATGGAGGCGATGTTTCGGACAGTCATTAGTCTAAAGGTTGCAGCG,Promoter (<=1kb),5,73998453,74068420,69968,2,Usp46-202,116,Usp46-202;Usp46-201;Usp46-204,Usp46;Usp46;Usp46,0;0;-2507,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,2,69727,ENSMUSG00000054814,conserved gene and region,5,74067928,74068797,870,*,870,95,0.726436782,0.827824519,0.109195402,5.17E-76,CpGisland,TRUE,U1,Pr-A
20691,cg11960934,0.0000347,0.00000445,7.789270951,1.02E-13,gain,yes,0.000000525,0.00000756,0.069430477,0.944691735,pos,ns,0.007314214,0.00221408,3.303499962,0.00106663,pos,ns,2.971986343,-0.0000931,0.0000761,-1.223152579,0.22220106,neg,ns,0.072828296,Pou4f1,Pou4f1_Promoter,14,104473449,104473498,104473449,104473450,50,-,CGCACAAATCAAAGCCCCTTGCGAGGGACTGGGAAATAGTTGCCTTGTCA,Promoter (5-6kb),14,104461676,104467999,6324,2,Pou4f1-201,-5499,Rnf219-201,Rnf219,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,6,31,18996,ENSMUSG00000048349,mapped to different genes,14,104472961,104473471,511,*,511,41,0.632093934,0.808918919,0.080234834,2.30E-27,CpGisland,TRUE,U3,Pr-B
10295,cg14590156,0.00000259,0.00000117,2.209559497,0.027866441,gain,ns,-0.000000138,0.00000199,-0.069276984,0.944813811,neg,ns,0.001345248,0.000583571,2.305197939,0.021815665,pos,ns,1.661231536,-0.0000286,0.0000201,-1.422922927,0.155764032,neg,ns,0.966026398,Hibadh,Hibadh_Intron,6,52567519,52567568,52567519,52567520,50,+,CGACAGCTGGGACAGAAAGCTGCTACTCAACGAACAATATAATCCCGTGA,"Intron (Hibadh-201/Hibadh, intron 4 of 7)",6,52546228,52640389,94162,2,Hibadh-201,72821,Hibadh-201;Hibadh-203,Hibadh;Hibadh,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,13,58875,ENSMUSG00000029776,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14922,cg26155008,0.0000742,0.0000143,5.195290957,0.000000371,gain,yes,-0.00000168,0.0000243,-0.069239809,0.944843377,neg,ns,0.016505649,0.007113061,2.320470713,0.020964226,pos,ns,1.678521175,-0.000309868,0.000244618,-1.266743105,0.206198069,neg,ns,0.293136269,Pax3,Pax3_Intron,1,78168167,78168216,78168215,78168216,50,+,AAGGGGCTTTAATGAAGCAAAGAGCTGCCATTCATTTGCAGATAAGCACG,"Intron (Pax3-201/Pax3, intron 4 of 8)",1,78101267,78196838,95572,2,Pax3-201,28622,Pax3-201;Pax3-202,Pax3;Pax3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,17,18505,ENSMUSG00000004872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17799,cg16371518,-0.00000312,0.00000234,-1.329700049,0.184594702,loss,ns,-0.000000275,0.00000398,-0.069145635,0.944918277,neg,ns,-0.000355683,0.00116697,-0.304791857,0.760729206,neg,ns,0.11876991,-0.000051,0.0000401,-1.270463735,0.204872143,neg,ns,0.93858988,Ambra1,Ambra1_Exon,2,91772748,91772797,91772748,91772749,50,+,CGCAGCAGGACCAGGGCCTCCTGAACCGGCCGTCTGCCTTCAGTACAGTC,"Exon (Ambra1-203/Ambra1, exon 8 of 19)",2,91730134,91918849,188716,1,Ambra1-203,42614,Ambra1-203;Ambra1-205;Ambra1-206;Ambra1-209;Ambra1-204;Ambra1-202;Ambra1-201;Ambra1-207,Ambra1;Ambra1;Ambra1;Ambra1;Ambra1;Ambra1;Ambra1;Ambra1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,12,228361,ENSMUSG00000040506,conserved gene and region,2,91772713,91772853,141,*,141,10,0.659574468,0.680501931,0.070921986,0.0000016,CpGisland,TRUE,U10,Tr-S
13161,cg05767211,0.00000107,0.000000355,3.017739171,0.002757857,gain,ns,-4.16E-08,0.000000602,-0.069126815,0.944933245,neg,ns,0.000423423,0.000176442,2.399784257,0.016994488,pos,ns,1.769691924,-0.00000686,0.00000607,-1.130205259,0.259263437,neg,ns,0.007234365,Tcf4,Tcf4_fiveUTR,18,69593509,69593558,69593509,69593510,50,-,CGAGACCATGTACTGCGCATACACAATCCCGGGCATGGGCGGCAACTCTT,5' UTR,18,69344146,69684343,340198,1,Tcf4-201,249363,Tcf4-201;Tcf4-207;Tcf4-240;Tcf4-254;Tcf4-246;Tcf4-206;Tcf4-202;Tcf4-257;Tcf4-232;Tcf4-248;Tcf4-231;Tcf4-205;Tcf4-253;Tcf4-238;Tcf4-249;Tcf4-219;Tcf4-227;Tcf4-250;Tcf4-229;Tcf4-260;Tcf4-226;Tcf4-216;Tcf4-256;Tcf4-230;Tcf4-221;Tcf4-234;Tcf4-258;Tcf4-217;Tcf4-247;Tcf4-252;Tcf4-218;Tcf4-243;Tcf4-237;Tcf4-239;Tcf4-262;Tcf4-223;Tcf4-212;Tcf4-204;Tcf4-225;Tcf4-222;Tcf4-261;Tcf4-255;Tcf4-203;Tcf4-241;Tcf4-236;Tcf4-228;Tcf4-220;Tcf4-242,Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,12,66,21413,ENSMUSG00000053477,conserved gene and region,18,69593509,69593604,96,*,96,8,0.5625,1.059310345,0.083333333,0.00000859,CpGisland,TRUE,U1,Pr-A
9342,cg02606720,-0.00000822,0.00000527,-1.559509598,0.119896087,loss,ns,0.000000618,0.00000895,0.068984098,0.945046753,pos,ns,0.001382767,0.002622875,0.527195008,0.598435245,pos,ns,0.222982836,-0.0000731,0.0000902,-0.810615235,0.41820853,neg,ns,0.886458437,Peli2,Peli2_threeUTR,14,48256312,48256361,48256312,48256313,50,+,CGAGAGGGAGTGTCCCATGTGCAGGACTGTGGGCCCCTATGTGCCTCTCT,3' UTR,14,48120823,48260888,140066,1,Peli2-201,135489,Peli2-201;Peli2-205;Peli2-206;Peli2-208,Peli2;Peli2;Peli2;Peli2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,2,93834,ENSMUSG00000021846,conserved gene but different region,14,48256258,48256525,268,*,268,22,0.638059702,0.80989011,0.082089552,3.69E-15,CpGisland,TRUE,U11,Tr-P
11878,cg23662313,-0.000091,0.0000173,-5.262799458,0.000000265,loss,yes,-0.00000203,0.0000294,-0.068971971,0.945056398,neg,ns,0.077053722,0.008608783,8.950594317,3.32E-17,pos,yes,16.47905427,-0.002182444,0.000296055,-7.371743597,1.54E-12,neg,yes,0.736592874,Tle3,Tle3_Intron,9,61376546,61376595,61376546,61376547,50,+,CGGTTGTTCTTTTTAACAATTGGTGTTCATGAAATCTCAGAAGGCTGTTG,"Intron (Tle3-218/Tle3, intron 4 of 19)",9,61372366,61418497,46132,1,Tle3-218,4180,Tle3-218;Tle3-204;Tle3-201;Tle3-215;Tle3-212;Tle3-208;Tle3-207;Tle3-217;Tle3-202;Tle3-206;Tle3-210;Tle3-205;Tle3-211;Tle3-209;Tle3-213,Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,30,21887,ENSMUSG00000032280,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
24735,cg17037818,0.0000701,0.0000171,4.089932875,0.0000551,gain,ns,-0.00000201,0.0000291,-0.068964902,0.94506202,neg,ns,0.007505303,0.008535355,0.879319445,0.379909188,pos,ns,0.420320203,0.00047659,0.00029353,1.623647831,0.105467359,pos,ns,0.275138782,Tspan9,Tspan9_Exon,6,128034424,128034473,128034472,128034473,50,-,CTTGGCAAAGTCCGAGTCCTTGCTGTCCAAAGATGGACTCCGATGGATCG,"Exon (Tspan9-204/Tspan9, exon 1 of 5)",6,127961396,128143563,182168,2,Tspan9-203,109090,Tspan9-203;Tspan9-202;Tspan9-201;Tspan9-204;Tspan9-211;Tspan9-209;Tspan9-208;Tspan9-207;Tspan9-206,Tspan9;Tspan9;Tspan9;Tspan9;Tspan9;Tspan9;Tspan9;Tspan9;Tspan9,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,8,109246,ENSMUSG00000030352,conserved gene and region,6,128034330,128034771,442,*,442,46,0.692307692,0.869148891,0.104072398,4.63E-36,CpGisland,TRUE,U3,Pr-B
16577,cg25332718,0.00000295,0.00000467,0.631463265,0.528203002,gain,ns,-0.000000546,0.00000794,-0.068845104,0.945157301,neg,ns,-0.00524109,0.002324884,-2.254344869,0.024872368,neg,ns,1.604282871,0.000280997,0.00008,3.514552083,0.000506147,pos,ns,0.812294882,Gm5231,Gm5231_Intergenic_downstream,17,85527417,85527466,85527417,85527418,50,-,CGATAAGGGGAAAACCGGCCCTTAAGCGTCCATTCTGTTCTGTATATTAA,Distal Intergenic,17,85541625,85542703,1079,2,Gm5231-201,15286,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,11,383282,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12711,cg05186043,-0.00000712,0.00000261,-2.727183391,0.006751608,loss,ns,-0.000000305,0.00000443,-0.068750467,0.945232571,neg,ns,-0.001784598,0.001298575,-1.374273577,0.170349481,neg,ns,0.768659184,0.0000655,0.0000447,1.466258185,0.143591587,pos,ns,0.935513422,Gm43516,Gm43516_Intergenic_upstream,3,66935458,66935507,66935506,66935507,50,-,AAGTGGATCGATATCTTGCCGAGCACAATAAATCAGCCTTCTGCTCTGCG,Distal Intergenic,3,66953541,66953862,322,1,Gm43516-201,-18083,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,11,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19011,cg07751402,0.0000352,0.00000548,6.428112085,4.87E-10,gain,yes,0.000000639,0.0000093,0.068693685,0.945277732,pos,ns,0.008067835,0.002725732,2.959878131,0.003314937,pos,ns,2.47952472,-0.000117272,0.0000937,-1.251064128,0.211854419,neg,ns,0.0810193,Dach1,Dach1_Exon,14,98168487,98168536,98168487,98168488,50,-,CGTTGGTGCAGTCATTGTAGAGGGTCTCGAAGTCCTTCCTGGAGATGAGT,"Exon (Dach1-201/Dach1, exon 1 of 11)",14,97786853,98169543,382691,2,Dach1-201,1007,Dach1-201;Dach1-202;Dach1-203,Dach1;Dach1;Dach1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,76,13134,ENSMUSG00000055639,conserved gene and region,14,98168225,98168726,502,*,502,39,0.655378486,0.727698484,0.077689243,1.64E-25,CpGisland,TRUE,U3,Pr-B
11139,cg19673529,-0.0000191,0.0000773,-0.247577135,0.804625501,loss,ns,-0.00000901,0.000131326,-0.068623073,0.945333894,neg,ns,-0.000128457,0.038474002,-0.003338788,0.997338185,neg,ns,0.001157553,0.000373986,0.001323118,0.282655458,0.777629598,pos,ns,0.438743483,Smad5,Smad5_Exon,13,56727467,56727516,56727515,56727516,50,+,AGTTTAGGAACCTGAGCCACAATGAACCACACATGCCACAAAATGCCACG,"Exon (Smad5-201/Smad5, exon 3 of 7)",13,56703010,56742377,39368,1,Smad5-201,24457,Smad5-201;Smad5-206;Smad5-203;Smad5-204;Smad5-202,Smad5;Smad5;Smad5;Smad5;Smad5,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,17129,ENSMUSG00000021540,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5591,cg23495507,0.000000145,0.0000028,0.05173948,0.958769602,gain,ns,-0.000000325,0.00000476,-0.068417241,0.945497606,neg,ns,-0.001192248,0.001393709,-0.855450171,0.392962658,neg,ns,0.405648717,0.000170541,0.0000479,3.558167675,0.000431888,pos,ns,0.884977056,Pbx3,Pbx3_Exon,2,34288778,34288827,34288826,34288827,50,+,GCATCATTTCATGTTCTGGCTCCCTTCACTGAGCTCAGCTTATGACCTCG,"Exon (Pbx3-210/Pbx3, exon 1 of 7)",2,34171457,34372038,200582,2,Pbx3-202,83211,Pbx3-202;Pbx3-201;Pbx3-210;Pbx3-206;Pbx3-207;Pbx3-209;Pbx3-204;Pbx3-205;Pbx3-203,Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3;Pbx3,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,82,18516,ENSMUSG00000038718,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8947,cg07685795,0.000123613,0.00000984,12.56175242,1.55E-29,gain,yes,0.00000114,0.0000167,0.068338875,0.945559936,pos,ns,0.014910486,0.004897687,3.04439336,0.002531344,pos,ns,2.596648874,-0.000456073,0.000168431,-2.707775302,0.007149475,neg,ns,0.137023584,Bmp4,Bmp4_Exon,14,46386027,46386076,46386027,46386028,50,-,CGCCTCCTAGCAGGACTTGGCATAATAAAACGACCATCAGCATTCGGTTA,"Exon (Bmp4-201/Bmp4, exon 3 of 4)",14,46383520,46390669,7150,2,Bmp4-201,4593,Bmp4-201;Bmp4-202;Bmp4-204;Bmp4-203;Gm15217-202;Gm15217-201;Gm15217-203,Bmp4;Bmp4;Bmp4;Bmp4;Gm15217;Gm15217;Gm15217,0;0;0;4459;6613;6560;4900,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,8,12159,ENSMUSG00000021835,conserved gene but different region,14,46385825,46386072,248,*,248,22,0.580645161,1.05982906,0.088709677,6.67E-16,CpGisland,TRUE,U3,Pr-B
24444,cg22357843,-0.000000465,0.00000111,-0.419565919,0.675093199,loss,ns,0.000000129,0.00000188,0.068316174,0.945577992,pos,ns,-0.0000178,0.000551915,-0.03225226,0.974291636,neg,ns,0.011311026,0.00000316,0.000019,0.166385767,0.867961843,pos,ns,0.982296749,Map7d1,Map7d1_Exon,4,126238562,126238611,126238610,126238611,50,-,GAGCCGCTTGTTGATTATAGAGTCCACGTGTTTGGGCAGGTTAACTGCCG,"Exon (Map7d1-203/Map7d1, exon 6 of 18)",4,126232167,126240111,7945,2,Map7d1-204,1500,Map7d1-204;Map7d1-203;Map7d1-201;Map7d1-202;Map7d1-205,Map7d1;Map7d1;Map7d1;Map7d1;Map7d1,0;0;0;0;-3786,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,245877,ENSMUSG00000028849,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18179,cg15436482,-0.0000569,0.00000823,-6.917337686,2.64E-11,loss,yes,-0.000000952,0.000014,-0.068045627,0.945793181,neg,ns,0.015533359,0.00409686,3.791528085,0.00017994,pos,ns,3.744872064,-0.000697633,0.000140891,-4.951590403,0.00000121,neg,yes,0.864022224,Herpud1,Herpud1_threeUTR,8,94395141,94395190,94395141,94395142,50,+,CGATTTGATTCCTGTTGGAATGTTTAAATTACACTAAGTGTACTACTTTA,3' UTR,8,94386438,94395377,8940,1,Herpud1-205,8703,Herpud1-205;Herpud1-201;Herpud1-204;Herpud1-202;Herpud1-206;Herpud1-203,Herpud1;Herpud1;Herpud1;Herpud1;Herpud1;Herpud1,0;0;0;0;0;1610,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,2,64209,ENSMUSG00000031770,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27764,cg16029138,-0.0000159,0.0000031,-5.122205776,0.000000532,loss,yes,0.000000358,0.00000527,0.067993666,0.94583451,pos,ns,-0.00245388,0.001544199,-1.589096194,0.113057996,neg,ns,0.946698716,0.000065,0.0000531,1.224930629,0.221531293,pos,ns,0.931769264,Mtarc1,Mtarc1_Intergenic_downstream,1,184782006,184782055,184782006,184782007,50,-,CGAGATCTGTTTGACCAATACATTTATATTTATGATGACTGAGGGCAGAT,Distal Intergenic,1,184787289,184808853,21565,2,Mtarc1-203,26847,Mtarc1-201;Mtarc1-202,Mtarc1;Mtarc1,29142;29258,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1248,cg15472612,0.00008,0.0000134,5.95095939,7.20E-09,gain,yes,0.00000155,0.0000228,0.067901328,0.945907955,pos,ns,0.036601139,0.006687731,5.472878462,9.15E-08,pos,ns,7.03871987,-0.000887309,0.000229991,-3.858023832,0.000139068,neg,ns,0.265585699,Bcor,Bcor_Intron,X,12133310,12133359,12133358,12133359,50,-,AGGCAGCCACGACTGAACGGTTGCGATCTAGAAAATTCAACAAGAGGCCG,"Intron (Bcor-201/Bcor, intron 1 of 13)",20,12036743,12160355,123613,2,Bcor-201,26996,Bcor-201;Bcor-207;Bcor-205;Bcor-208,Bcor;Bcor;Bcor;Bcor,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,56,74,71458,ENSMUSG00000040363,conserved gene and region,X,12133307,12133373,67,*,67,7,0.597014925,1.175438597,0.104477612,0.00000982,CpGisland,TRUE,U3,Pr-B
6311,cg08172555,-0.00000904,0.00000305,-2.963077157,0.00328163,loss,ns,0.00000035,0.00000518,0.067555925,0.946182692,pos,ns,-0.002840149,0.001518562,-1.870287901,0.062386068,neg,ns,1.204912387,0.00000629,0.0000522,0.120425079,0.904224437,pos,ns,0.945422857,Hs3st5,Hs3st5_Exon,10,36833395,36833444,36833443,36833444,50,+,AAGGGGCGCATTCATCCAGAGGTGGACCCCTCTGTCATTACTAAATTGCG,"Exon (Hs3st5-202/Hs3st5, exon 5 of 5)",10,36506814,36833773,326960,1,Hs3st5-202,326581,Hs3st5-202;Hs3st5-201;Hs3st5-203,Hs3st5;Hs3st5;Hs3st5,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,319415,ENSMUSG00000044499,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2754,cg13149200,-0.0000203,0.00000635,-3.192701086,0.001554207,loss,ns,0.000000728,0.0000108,0.067478005,0.946244671,pos,ns,-0.006719393,0.003160182,-2.126267792,0.034270854,neg,ns,1.465075073,0.0000647,0.000108678,0.595710051,0.551803606,pos,ns,0.830222385,Smarca4,Smarca4_Exon,9,21678027,21678076,21678027,21678028,50,+,CGACTTGGAGGAGCCACCTCTAAAGGTGAGAGGGGTAGTTCAGTCTCCAT,"Exon (Smarca4-203/Smarca4, exon 24 of 27)",9,21616169,21704217,88049,1,Smarca4-201,61858,Smarca4-201;Smarca4-202;Smarca4-204;Smarca4-203,Smarca4;Smarca4;Smarca4;Smarca4,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,6,20586,ENSMUSG00000032187,conserved gene but different region,9,21677969,21678028,60,*,60,7,0.766666667,0.833333333,0.116666667,0.00000466,CpGisland,TRUE,U10,Tr-S
12432,cg22070406,0.000177428,0.000013,13.68438928,1.14E-33,gain,yes,0.00000148,0.000022,0.067373965,0.946327428,pos,ns,0.009541974,0.006453179,1.478646895,0.140250068,pos,ns,0.853096921,0.000274097,0.000221924,1.235092079,0.217731498,pos,ns,0.334022047,St8sia3,St8sia3_fiveUTR,18,64265046,64265095,64265094,64265095,50,+,TGCTTAGATCGAACTGTAACATTATTCCAATCACATTTATCTTGCAGGCG,5' UTR,18,64254359,64279611,25253,1,St8sia3-201,10687,St8sia3-201;St8sia3-206;St8sia3-207;St8sia3-204;St8sia3-203;St8sia3-205;St8sia3-202,St8sia3;St8sia3;St8sia3;St8sia3;St8sia3;St8sia3;St8sia3,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,4,20451,ENSMUSG00000056812,conserved gene but different region,18,64265055,64265562,508,*,508,41,0.643700787,0.803549383,0.080708661,1.80E-27,CpGisland,TRUE,NA,NRS
24506,cg08388688,-0.0000035,0.00000117,-2.983858231,0.003072619,loss,ns,-0.000000134,0.00000199,-0.067340608,0.946353961,neg,ns,0.000213755,0.000583812,0.366137153,0.714512477,pos,ns,0.145990183,-0.0000366,0.0000201,-1.821957417,0.069424917,neg,ns,0.021287874,Gabpb1,Gabpb1_Promoter,2,126675202,126675251,126675250,126675251,50,+,GGCCAGGAGCCCCGGAAACCCGGCGCCTTAATGCAATAAACAGGAAATCG,Promoter (<=1kb),2,126627442,126675568,48127,2,Gabpb1-206,317,Gabpb1-206;Gabpb1-205;Gabpb1-204;Gabpb1-201;Gabpb1-203;Gabpb1-202;Gabpb1-208;Gabpb1-207,Gabpb1;Gabpb1;Gabpb1;Gabpb1;Gabpb1;Gabpb1;Gabpb1;Gabpb1,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,4,12,14391,ENSMUSG00000027361,conserved gene and region,2,126674561,126675949,1389,*,1389,168,0.699064075,0.9905509,0.120950324,2.65E-142,CpGisland,TRUE,U1,Pr-A
4919,cg15477904,-0.00000605,0.00000213,-2.845210246,0.004733674,loss,ns,0.000000243,0.00000361,0.06730416,0.946382953,pos,ns,-0.000130962,0.001058429,-0.123732311,0.901607414,neg,ns,0.044982526,-0.000026,0.0000364,-0.71306391,0.476342625,neg,ns,0.941907913,Hddc2,Hddc2_Exon,10,31316300,31316349,31316300,31316301,50,+,CGCCTAGCCCTGGTTCATGATATGGCAGAATGCATCGTTGGGGACATAGC,"Exon (Hddc2-201/Hddc2, exon 3 of 6)",10,31313383,31328204,14822,1,Hddc2-201,2917,Hddc2-201;Hddc2-205;Hddc2-204;Hddc2-202;Hddc2-203,Hddc2;Hddc2;Hddc2;Hddc2;Hddc2,0;0;0;0;-3818,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,69692,ENSMUSG00000000295,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26673,cg09635768,-0.00000955,0.00000437,-2.183490709,0.029749211,loss,ns,0.0000005,0.00000743,0.067289797,0.946394377,pos,ns,0.005866255,0.002175875,2.696044028,0.007400104,pos,ns,2.130762205,-0.000257186,0.0000748,-3.437022862,0.000668452,neg,ns,0.933889759,Rere,Rere_Exon,4,150477374,150477423,150477422,150477423,50,+,AACATCTCCCATTTTTCTGACATATTTGCTGCTAGAGAGTTTAAAGCCCG,"Exon (Rere-202/Rere, exon 7 of 23)",4,150281646,150621966,340321,1,Rere-202,195728,Rere-202,Rere,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,7,68703,ENSMUSG00000039852,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18517,cg03697136,0.0000228,0.00000734,3.108366187,0.002055689,gain,ns,0.000000838,0.0000125,0.067151731,0.9465042,pos,ns,0.001356554,0.003654744,0.371176274,0.71075978,pos,ns,0.148277156,0.000149231,0.000125686,1.187326537,0.236007837,pos,ns,0.12540232,Hoxb9,Hoxb9_Promoter,11,96271289,96271338,96271289,96271290,50,-,CGGAGCTGACGCTTTATCAGGCAGTCGGAAAAACTTTGACCAATCATTTT,Promoter (<=1kb),11,96271457,96276595,5139,1,Hoxb9-201,-168,Hoxb9-201;Hoxb9-202,Hoxb9;Hoxb9,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,7,22,15417,ENSMUSG00000020875,mapped to different genes,11,96271235,96271356,122,*,122,12,0.573770492,1.195102041,0.098360656,2.23E-09,CpGisland,TRUE,U13,Hc-P
26270,cg15444788,0.0000194,0.00000454,4.26621182,0.0000264,gain,ns,-0.000000516,0.00000771,-0.066931836,0.946679115,neg,ns,0.005241693,0.002259056,2.320301898,0.020973476,pos,ns,1.678329596,-0.000128864,0.0000777,-1.658717512,0.098184113,neg,ns,0.043571145,Syde2,Syde2_fiveUTR,3,145988428,145988477,145988428,145988429,50,-,CGAGAGGCCTATTATCTGCTGATCCAGGCCATGCACGACCTGCCCCCTGA,Promoter (<=1kb),3,145987870,146021720,33851,1,Syde2-201,558,Syde2-201;Syde2-204;Syde2-203,Syde2;Syde2;Syde2,0;0;-176,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,1,214804,ENSMUSG00000036863,conserved gene but different region,3,145987646,145988894,1249,*,1249,173,0.767814251,0.939816627,0.138510809,1.83E-158,CpGisland,TRUE,NA,NRS
8626,cg10266308,0.0000493,0.00000871,5.653573016,3.57E-08,gain,yes,-0.00000099,0.0000148,-0.066851921,0.946742683,neg,ns,-0.000761993,0.004336366,-0.175721676,0.860627333,neg,ns,0.065184865,-0.0000233,0.000149127,-0.156494166,0.875745383,neg,ns,0.481448419,Dscaml1,Dscaml1_Intron,9,45470989,45471038,45471037,45471038,50,+,GGGGTGAGAAACTGTCTGAAATAATTCCATCCTTCCCTGGAGACTTGGCG,"Intron (Dscaml1-208/Dscaml1, intron 5 of 5)",9,45426628,45571224,144597,1,Dscaml1-208,44361,Dscaml1-208;Dscaml1-209;Dscaml1-202;Dscaml1-211;Dscaml1-201;Dscaml1-210,Dscaml1;Dscaml1;Dscaml1;Dscaml1;Dscaml1;Dscaml1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,32,114873,ENSMUSG00000032087,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19060,cg05791494,0.0000204,0.000013,1.571402593,0.117109229,gain,ns,-0.00000148,0.0000221,-0.066828656,0.94676119,neg,ns,0.000360636,0.006472304,0.055719838,0.95560089,pos,ns,0.019723454,0.000622716,0.000222582,2.797694864,0.005468852,pos,ns,0.793520129,Gm765,Gm765_Intron,6,98311786,98311835,98311786,98311787,50,-,CGAACAGACCGCTTTTATTGGCTTTTAGTGCTATTACTGCTGTCATAAGT,"Intron (Gm765-201/Gm765, intron 2 of 3)",6,98235708,98342754,107047,2,Gm765-201,30919,Gm765-201,Gm765,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,10,330390,ENSMUSG00000090667,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6044,cg07859114,0.0000061,0.00000246,2.480770119,0.013640196,gain,ns,-0.000000279,0.00000417,-0.066810431,0.946775687,neg,ns,-0.000219244,0.001223049,-0.179260003,0.857850657,neg,ns,0.066588312,0.0000381,0.0000421,0.906164023,0.365552817,pos,ns,0.095062745,Cxxc5,Cxxc5_Exon,18,35889930,35889979,35889978,35889979,50,-,CCGCTGTGGTGAGAACAGAGTTGACACTTCTTTCCTTTCCACTTACTGCG,"Exon (Gm36315-201/Gm36315-201, exon 1 of 2)",18,35854738,35858619,3882,1,Cxxc5-205,35241,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,49,67393,ENSMUSG00000046668,conserved gene but different region,18,35889630,35890054,425,*,425,43,0.656470588,0.954108802,0.101176471,3.55E-33,CpGisland,TRUE,U3,Pr-B
26627,cg07881279,9.46E-08,0.00000189,0.050079686,0.960091139,gain,ns,-0.000000214,0.00000321,-0.066808047,0.946777583,neg,ns,0.001389242,0.000940328,1.477401374,0.140583271,pos,ns,0.852066355,-0.0000571,0.0000323,-1.764928763,0.078560341,neg,ns,0.953922449,Pex14,Pex14_Intron,4,149044341,149044390,149044389,149044390,50,+,GCATCTCTTATTTCTTTAAATACATTAATCAGCCTAGTGTAGGCAAAACG,"Intron (Pex14-201/Pex14, intron 2 of 8)",4,148960535,149099876,139342,2,Pex14-201,55486,Pex14-201;Pex14-202;Pex14-205;Pex14-203;Pex14-204,Pex14;Pex14;Pex14;Pex14;Pex14,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,41,48,56273,ENSMUSG00000028975,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9118,cg24678565,-0.00000107,0.000000714,-1.500322359,0.134548679,loss,ns,8.09E-08,0.00000121,0.066679803,0.946879597,pos,ns,-0.000374403,0.000355409,-1.053442154,0.292958781,neg,ns,0.533193481,0.00000185,0.0000122,0.151703377,0.879519571,pos,ns,0.982016787,Ubr2,Ubr2_threeUTR,17,46980358,46980407,46980358,46980359,50,-,CGACTGAAAACTCTCTGTCGTGGTCATCTGTCACATAATCACTCTGCAAA,3' UTR,17,46928295,47010520,82226,2,Ubr2-202,30113,Ubr2-202;Ubr2-205;Ubr2-201;Ubr2-206,Ubr2;Ubr2;Ubr2;Ubr2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,4,224826,ENSMUSG00000023977,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23719,cg02439040,0.0000782,0.0000134,5.845532927,1.28E-08,gain,yes,-0.00000151,0.0000227,-0.066665553,0.946890931,neg,ns,0.019108498,0.006657107,2.870390777,0.004381629,pos,ns,2.35836442,-0.000731456,0.000228937,-3.195005411,0.001542247,neg,ns,0.289892502,Slc38a10,Slc38a10_Exon,11,120186407,120186456,120186455,120186456,50,-,ACATCCAATTTGGCTTGGCGTAATAAAATCAGCCGGAGCTCCCTTAAACG,"Exon (2810410L24Rik-202/2810410L24Rik-202, exon 2 of 2)",11,120103960,120151346,47387,2,Slc38a10-201,-35110,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,72055,ENSMUSG00000061306,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
21432,cg19322552,-0.00000282,0.00000159,-1.773402169,0.077143836,loss,ns,0.00000018,0.0000027,0.066589043,0.946951793,pos,ns,-0.000796229,0.0007921,-1.005212721,0.315578405,neg,ns,0.500892724,0.0000301,0.0000272,1.104877561,0.270069446,pos,ns,0.960315365,Zswim6,Zswim6_Intron,13,107744741,107744790,107744789,107744790,50,-,TATTTAACATTTCACAAAGCCACACAACATAGCTACAAAACAAACCAGCG,"Intron (Zswim6-204/Zswim6, intron 5 of 12)",13,107724617,107890064,165448,2,Zswim6-204,145274,Zswim6-204;Zswim6-201;Zswim6-203,Zswim6;Zswim6;Zswim6,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,26,67263,ENSMUSG00000032846,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9666,cg13692433,0.0000239,0.00000314,7.626579877,2.98E-13,gain,yes,-0.000000354,0.00000533,-0.06648327,0.947035933,neg,ns,0.004693074,0.001560759,3.006918693,0.00285501,pos,ns,2.544392371,-0.000047,0.0000537,-0.876459345,0.381459026,neg,ns,0.081577923,Ncam1,Ncam1_fiveUTR,9,49798904,49798953,49798904,49798905,50,-,CGCTGATCGGAGAATGAGTGACAGTCCCAGCCTCAGCACACTCGCAACTC,Promoter (<=1kb),9,49502136,49798925,296790,2,Ncam1-204,0,Ncam1-204;Ncam1-202;Ncam1-201;Ncam1-203;Ncam1-207,Ncam1;Ncam1;Ncam1;Ncam1;Ncam1,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,16,17967,ENSMUSG00000039542,conserved gene and region,9,49798889,49799056,168,*,168,16,0.660714286,0.881311475,0.095238095,3.56E-12,CpGisland,TRUE,U3,Pr-B
13146,cg13003121,0.0000015,0.00000424,0.3541505,0.723466862,gain,ns,-0.000000478,0.0000072,-0.066439165,0.947071017,neg,ns,0.000153011,0.002109275,0.072542035,0.942217335,pos,ns,0.02584891,0.0000312,0.0000725,0.430133859,0.66739713,pos,ns,0.951983561,Tcf4,Tcf4_Intron,18,69559344,69559393,69559392,69559393,50,-,AGCAATGGCCCTTCTGTGGTCAGAATGGCACATTCAGCAGCAACTATTCG,"Intron (Tcf4-259/Tcf4, intron 6 of 6)",18,69343356,69564082,220727,1,Tcf4-259,215988,Tcf4-259;Tcf4-201;Tcf4-207;Tcf4-210;Tcf4-240;Tcf4-254;Tcf4-246;Tcf4-206;Tcf4-202;Tcf4-257;Tcf4-232;Tcf4-248;Tcf4-231;Tcf4-205;Tcf4-253;Tcf4-233;Tcf4-238;Tcf4-245;Tcf4-249;Tcf4-219;Tcf4-235;Tcf4-227;Tcf4-250;Tcf4-229;Tcf4-260;Tcf4-226;Tcf4-216;Tcf4-256;Tcf4-230;Tcf4-221;Tcf4-234;Tcf4-258;Tcf4-217;Tcf4-247;Tcf4-252;Tcf4-218;Tcf4-208;Tcf4-243;Tcf4-237;Tcf4-239;Tcf4-262;Tcf4-223;Tcf4-212,Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,42,66,21413,ENSMUSG00000053477,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7765,cg19438533,0.00000483,0.00000685,0.705670873,0.480922774,gain,ns,-0.000000772,0.0000116,-0.066340039,0.94714987,neg,ns,0.007795128,0.003409194,2.286501799,0.022898997,pos,ns,1.640183535,-0.000208343,0.000117242,-1.77703869,0.076542364,neg,ns,0.819246532,Arhgap15,Arhgap15_Intron,2,44208231,44208280,44208279,44208280,50,+,TTAACATGTACAGCATCATTTGTCAACAAAGCAACAATGTAAGCAAATCG,"Intron (Arhgap15-203/Arhgap15, intron 11 of 14)",2,43748824,44395953,647130,1,Arhgap15-203,459407,Arhgap15-203;Arhgap15-202;Arhgap15-201,Arhgap15;Arhgap15;Arhgap15,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,72,78,76117,ENSMUSG00000049744,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5647,cg02628039,0.0000919,0.0000173,5.298492122,0.000000222,gain,yes,-0.00000195,0.0000295,-0.066313404,0.947171058,neg,ns,0.034498571,0.008635176,3.995120662,0.0000808,pos,ns,4.092409382,-0.00083584,0.000296963,-2.81462751,0.005195751,neg,ns,0.342287531,Sox2,Sox2_Exon,3,34482110,34482159,34482110,34482111,50,+,CGTGGGGTTTGGAGGCCTCAGTAAATTGAAAATTGCAAATGAAATCCACT,"Exon (Gm29135-201/Gm29135-201, exon 1 of 2)",3,34650405,34652461,2057,1,Sox2-201,-168246,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,62,20674,ENSMUSG00000074637,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16013,cg06606386,-0.0000713,0.00000894,-7.981920375,2.83E-14,loss,yes,-0.00000101,0.0000152,-0.066241525,0.947228237,neg,ns,-0.007363815,0.00444783,-1.655597137,0.098815338,neg,ns,1.005175641,-0.000102141,0.000152961,-0.667758447,0.504784608,neg,ns,0.841610343,Nanos3,Nanos3_Exon,8,84208522,84208571,84208522,84208523,50,+,CGGCTGGGGTTCCTGGGGATGGGATTTGCTTCCTGTCACAAATCACATTG,"Exon (Mir23a-201/Mir23a-201, exon 1 of 1)",8,84173731,84185217,11487,2,Nanos3-203,-23305,Zswim4-201,Zswim4,28484,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,244551,ENSMUSG00000056155,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4153,cg07830314,-0.0000042,0.00000681,-0.617309416,0.53748381,loss,ns,0.000000766,0.0000116,0.066236437,0.947232284,pos,ns,-0.001107927,0.00338961,-0.326859702,0.743994585,neg,ns,0.128430226,-0.00012173,0.000116568,-1.044281453,0.297168821,neg,ns,0.71167991,Gm12074,Gm12074_Intergenic_upstream,11,26981397,26981446,26981397,26981398,50,+,CGGCTCCCCTGGCATCTTTGGCACGGCTTGGCTTTACACTGCGGACTAAA,Distal Intergenic,11,27051697,27051915,219,1,Gm12074-201,-70251,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,10,100042367,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4726,cg17292423,0.0000341,0.00000596,5.724243668,2.45E-08,gain,yes,-0.000000671,0.0000101,-0.066218427,0.947246611,neg,ns,0.000174568,0.002967923,0.058818093,0.953134894,pos,ns,0.020845631,0.000173874,0.000102067,1.703536028,0.089469974,pos,ns,0.799823804,Mecom,Mecom_Intron,3,30322063,30322112,30322111,30322112,50,+,AGTACAGTGTAAAGTCATCAATAACGCTTTGATAGATCCCTGTCTGCCCG,"Intron (Mecom-212/Mecom, intron 1 of 15)",3,29951299,30509733,558435,2,Mecom-212,187621,Mecom-212;Mecom-213;Mecom-207;Mecom-208;Mecom-211;Mecom-209,Mecom;Mecom;Mecom;Mecom;Mecom;Mecom,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,80,14013,ENSMUSG00000027684,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23393,cg02927162,0.0000164,0.00000264,6.198878217,1.81E-09,gain,yes,-0.000000297,0.00000449,-0.066135873,0.947312282,neg,ns,0.001409395,0.001316313,1.070714281,0.285130832,pos,ns,0.544955818,0.0000145,0.0000453,0.321114507,0.748339997,pos,ns,0.071212865,Sox21,Sox21_Intergenic_downstream,14,118232086,118232135,118232134,118232135,50,-,AACTAAGATTTAGGGCTGGGGTGATTTCCAGCGAGCCGCAGGAAGTTCCG,Distal Intergenic,14,118233232,118237030,3799,2,Sox21-201,4944,Sox21-201,Sox21,4895,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,26,27,223227,ENSMUSG00000061517,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
1419,cg27706408,0.0000762,0.000007,10.8866434,1.37E-23,gain,yes,0.000000786,0.0000119,0.066125684,0.947320387,pos,ns,-0.000733622,0.003484432,-0.210542857,0.833382327,neg,ns,0.079155713,0.000178839,0.000119829,1.492446102,0.136599214,pos,ns,0.675358901,Rpl36-ps3,Rpl36-ps3_Intergenic_upstream,12,12753948,12753997,12753996,12753997,50,+,CAATGAGAACTTTTAATCCCTCAGGTAAATGCAAAGTCGCATTGAACACG,Distal Intergenic,12,12912022,12912336,315,1,Rpl36-ps3-201,-158025,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,19,20,100043215,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2281,cg20759301,-0.0000134,0.00000708,-1.892299564,0.059382677,loss,ns,0.000000795,0.000012,0.066103978,0.947337654,pos,ns,-0.00315393,0.003524772,-0.894789813,0.37159366,neg,ns,0.429931704,-0.0000239,0.000121217,-0.197133142,0.843852535,neg,ns,0.884887177,Gm30341,Gm30341_Intergenic_downstream,3,18937794,18937843,18937794,18937795,50,+,CGGGGACCTTTTAATTTTTGCCAGCAATATTTCACTGCCCCAATCAGGGC,Distal Intergenic,3,18753077,18753365,289,1,Gm30341-201,184717,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,23,102632201,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19318,cg25977281,0.0000135,0.00000417,3.229353743,0.001373783,gain,ns,0.000000468,0.00000708,0.066039964,0.947388577,pos,ns,0.000799391,0.002075361,0.385181529,0.700367076,pos,ns,0.154674278,-0.0000392,0.0000714,-0.549097514,0.583333821,neg,ns,0.471316087,Rara,Rara_Exon,11,98970511,98970560,98970511,98970512,50,+,CGTGTCTCTCTGGACATTGACCTCTGGGACAAGTTCAGTGAACTCTCCAC,"Exon (Rara-203/Rara, exon 6 of 9)",11,98927818,98974162,46345,1,Rara-203,42693,Rara-203;Rara-204;Rara-201;Rara-207;Rara-202,Rara;Rara;Rara;Rara;Rara,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,12,19401,ENSMUSG00000037992,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14277,cg24826280,-0.00000482,0.00000503,-0.956585112,0.339522093,loss,ns,0.000000564,0.00000855,0.065989369,0.947428825,pos,ns,-0.002397975,0.002505708,-0.957004857,0.33931053,neg,ns,0.469402662,0.0000669,0.0000862,0.776273677,0.43817927,pos,ns,0.775753941,Smg6,Smg6_Intron,11,75033985,75034034,75034033,75034034,50,-,AGCACTAATTAGAAATACATAACATCCGGCCACATGGCAGCCTTCTCCCG,"Intron (Smg6-201/Smg6, intron 10 of 18)",11,74925823,75164448,238626,1,Smg6-201,108162,Smg6-201;Smg6-202;Smg6-204,Smg6;Smg6;Smg6,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,34,103677,ENSMUSG00000038290,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13264,cg13051310,-0.0000068,0.00000549,-1.238968475,0.216294428,loss,ns,0.000000614,0.00000932,0.06584604,0.947542844,pos,ns,-0.00054858,0.002731386,-0.200843006,0.840953041,neg,ns,0.075228254,0.000131623,0.0000939,1.401251568,0.162139165,pos,ns,0.495607918,Pebp4,Pebp4_Intron,14,69934266,69934315,69934314,69934315,50,-,ATGGACCGACAGACATCACTCACAGTGTGCAGGTAATGAGGCATAAAACG,"Intron (Pebp4-201/Pebp4, intron 3 of 6)",14,69840420,70059918,219499,1,Pebp4-201,93846,Pebp4-201,Pebp4,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,14,14,73523,ENSMUSG00000022085,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27859,cg23760002,-0.00000957,0.00000236,-4.050053804,0.0000648,loss,ns,-0.000000264,0.00000401,-0.065817729,0.947565366,neg,ns,-0.002795045,0.001176122,-2.376491094,0.018085235,neg,ns,1.742675833,0.000149522,0.0000404,3.696772785,0.000258148,pos,ns,0.9433345,Ush2a,Ush2a_Intron,1,188656595,188656644,188656595,188656596,50,+,CGTAATGACCCTCTACATGTTAGTATTGCAGTAAAGCTGGGCTTTTATGT,"Intron (Ush2a-201/Ush2a, intron 36 of 70)",1,188263034,188965041,702008,1,Ush2a-201,393561,Ush2a-201;Ush2a-204,Ush2a;Ush2a,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,33,36,22283,ENSMUSG00000026609,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10059,cg17855565,8.56E-09,0.000000997,0.00859125,0.993150785,gain,ns,-0.000000111,0.00000169,-0.065722693,0.947640968,neg,ns,0.000334853,0.000495988,0.675123506,0.500100532,pos,ns,0.300942683,0.00000192,0.0000171,0.112569707,0.910444561,pos,ns,0.032636446,Maml3,Maml3_fiveUTR,3,52104789,52104838,52104837,52104838,50,-,ACAGTCCGAGGCGACTGCAAAAGTAGATCGGTGAAGTCCTTTGCAAAACG,Promoter (<=1kb),3,51685907,52105076,419170,2,Maml3-202,238,Maml3-202,Maml3,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,14,32,433586,ENSMUSG00000061143,conserved gene and region,3,52104757,52105132,376,*,376,44,0.686170213,1.011741683,0.117021277,5.57E-37,CpGisland,TRUE,U1,Pr-A
3959,cg17676600,-0.00000149,0.00000525,-0.283534028,0.776956762,loss,ns,0.000000585,0.00000892,0.065607782,0.947732382,pos,ns,-0.00425555,0.002613215,-1.628473006,0.104440429,neg,ns,0.981131352,-0.0000399,0.0000899,-0.444307334,0.657130406,neg,ns,0.896649937,Nlgn1,Nlgn1_Exon,3,25920193,25920242,25920193,25920194,50,-,CGTCATTATCACCTAAATCATCTGTCTGTTTCTTTGTAAGGGGACCTAGG,"Exon (Nlgn1-205/Nlgn1, exon 4 of 8)",3,25426215,26332460,906246,2,Nlgn1-205,412218,Nlgn1-205;Nlgn1-201;Nlgn1-202;Nlgn1-203,Nlgn1;Nlgn1;Nlgn1;Nlgn1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,7,192167,ENSMUSG00000063887,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3156,cg27122431,0.000052,0.0000106,4.924502334,0.00000138,gain,yes,-0.00000118,0.0000179,-0.06558774,0.947748327,neg,ns,0.015357904,0.005256704,2.921584246,0.003738372,pos,ns,2.42731748,0.000107679,0.000180778,0.595643256,0.55184818,pos,ns,0.100389139,Cdh18,Cdh18_Intron,15,23035897,23035946,23035945,23035946,50,-,TGGATCACTGATGAATGAGCCAGCAGTTGAATGTTTAGCAGGCTGTGACG,"Intron (Cdh18-202/Cdh18, intron 1 of 6)",15,22549022,23400567,851546,1,Cdh18-202,486875,Cdh18-202;Cdh18-206;Cdh18-201;Cdh18-203,Cdh18;Cdh18;Cdh18;Cdh18,0;-509;-517;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,4,320865,ENSMUSG00000040420,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18587,cg05085809,0.0000567,0.00000938,6.039177655,4.43E-09,gain,yes,0.00000105,0.0000159,0.065586862,0.947749024,pos,ns,-0.001876141,0.004668906,-0.401837451,0.688080552,neg,ns,0.162360717,0.000176316,0.000160563,1.098109539,0.273008826,pos,ns,0.055058324,Hoxb5,Hoxb5_fiveUTR,11,96303526,96303575,96303574,96303575,50,+,CGCTATAATTCATTAATACATCATAAATCGTGAAGCACAGGGTTATAACG,Promoter (<=1kb),11,96303336,96306121,2786,1,Hoxb5-202,190,Hoxb5-202;Hoxb5-201;Hoxb6-202;Hoxb6-201,Hoxb5;Hoxb5;Hoxb6;Hoxb6,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,34,15413,ENSMUSG00000038700,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
5351,cg08515724,-0.00000161,0.00000498,-0.324034983,0.746130064,loss,ns,0.000000554,0.00000846,0.065494277,0.947822678,pos,ns,0.001793189,0.002477554,0.723773609,0.469750539,pos,ns,0.328132713,-0.000097,0.0000852,-1.13846778,0.25580425,neg,ns,0.874987581,Lmx1b,Lmx1b_Exon,2,33565073,33565122,33565121,33565122,50,+,TGTGGTCACCTGGCATTTGGGGCGGCGTGAGGCCCTGCTGGAAGGGGTCG,"Exon (Lmx1b-201/Lmx1b, exon 7 of 8)",2,33560965,33640608,79644,2,Lmx1b-201,75486,Lmx1b-201;Lmx1b-203;Lmx1b-204;Lmx1b-202,Lmx1b;Lmx1b;Lmx1b;Lmx1b,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,26,16917,ENSMUSG00000038765,conserved gene and region,2,33565095,33565211,117,*,117,9,0.675213675,0.683766234,0.076923077,0.00000341,CpGisland,TRUE,U11,Tr-P
16612,cg05273495,-0.0000244,0.00000758,-3.226068858,0.001389124,loss,ns,0.000000842,0.0000129,0.065421622,0.947880478,pos,ns,-0.00562117,0.003770397,-1.490869475,0.137012575,neg,ns,0.86323957,-0.0000676,0.000129664,-0.521590144,0.602328167,neg,ns,0.861586504,Bcas3,Bcas3_Intron,11,85628652,85628701,85628700,85628701,50,+,TTCCTTGTGAAATGATTTCCACCAGTCTTGAATCTTTCTTGTTTCTGCCG,"Intron (Bcas3-205/Bcas3, intron 24 of 27)",11,85353167,85826058,472892,1,Bcas3-205,275485,Bcas3-205;Bcas3-206;Bcas3-201;Bcas3-202;Bcas3-216;Bcas3-212;Bcas3-203,Bcas3;Bcas3;Bcas3;Bcas3;Bcas3;Bcas3;Bcas3,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,24,192197,ENSMUSG00000059439,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4249,cg08333447,-0.00000175,0.00000213,-0.825303,0.409834225,loss,ns,-0.000000235,0.00000361,-0.064989724,0.948224071,neg,ns,-0.000656115,0.001058001,-0.620146138,0.53561717,neg,ns,0.27114551,0.00000814,0.0000364,0.223701744,0.823136737,pos,ns,0.967743495,Anks1,Anks1_Exon,17,27978459,27978508,27978459,27978460,50,+,CGGCCCCTTTGACCCTTATATCAATGCCAAGGTGTGTACTTTGCTGCCAG,"Exon (Anks1-203/Anks1, exon 4 of 25)",17,27909306,28062775,153470,1,Anks1-203,69153,Anks1-203;Anks1-202;Anks1-211;Anks1-205;Anks1-201,Anks1;Anks1;Anks1;Anks1;Anks1,0;0;0;69094;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,6,224650,ENSMUSG00000024219,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1238,cg05943754,-0.0000564,0.00000953,-5.911882492,8.92E-09,loss,yes,0.00000105,0.0000162,0.064952585,0.948253617,pos,ns,-0.011744527,0.004744387,-2.475457204,0.013840731,neg,ns,1.858840978,0.000209474,0.000163159,1.28386368,0.200148416,pos,ns,0.879414826,Ptprg,Ptprg_Exon,14,12091408,12091457,12091456,12091457,50,-,CATTTAGGTCAGTCCGAGGGACAATTCTGCACTGGATCCTATTATCCACG,"Exon (Ptprg-201/Ptprg, exon 6 of 30)",14,11553532,12242041,688510,1,Ptprg-201,537876,Ptprg-201;Ptprg-204;Ptprg-206,Ptprg;Ptprg;Ptprg,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,23,19270,ENSMUSG00000021745,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
10133,cg14429861,0.0000521,0.0000115,4.550889206,0.00000768,gain,ns,-0.00000126,0.0000195,-0.064940662,0.948263103,neg,ns,0.016343966,0.005699556,2.867585767,0.00441963,pos,ns,2.35461413,-0.000234504,0.000196007,-1.196403568,0.232453331,neg,ns,0.296282937,Gm28308,Gm28308_Intron,6,52201004,52201053,52201052,52201053,50,-,ATGTCAACTCCCCAAAACCATAAAACTTACTTTAATGGCCCCACGTGACG,"Intron (Hoxaas3-202/Hoxaas3-202, intron 1 of 2)",6,52163359,52213339,49981,2,Gm28308-201,12286,Gm28308-201;Hoxa3-201;Hoxa3-203;Hoxa5-201,Gm28308;Hoxa3;Hoxa3;Hoxa5,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,46,103,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
2410,cg19963681,0.00000471,0.00000732,0.643551029,0.520342404,gain,ns,-0.000000807,0.0000124,-0.064916719,0.948282151,neg,ns,-0.000697986,0.003643096,-0.1915915,0.848187631,neg,ns,0.071508065,0.0000589,0.000125286,0.470462477,0.638355466,pos,ns,0.820146767,Fosb,Fosb_Exon,7,19307553,19307602,19307553,19307554,50,-,CGAGTGTGGATGTGTGTGTCACAGGGAAAAAGCCACAACACCCACCCTTC,"Exon (Fosb-204/Fosb, exon 1 of 1)",7,19302696,19310051,7356,2,Fosb-201,2449,Fosb-201;Fosb-202;Fosb-203;Fosb-205;Fosb-207;Fosb-206;Fosb-204,Fosb;Fosb;Fosb;Fosb;Fosb;Fosb;Fosb,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,13,14282,ENSMUSG00000003545,mapped to different genes,7,19307356,19307554,199,*,199,14,0.592964824,0.806134259,0.070351759,6.46E-09,CpGisland,TRUE,U13,Hc-P
11257,cg16468913,-0.0000264,0.00000638,-4.145601013,0.0000438,loss,ns,0.000000703,0.0000108,0.064875087,0.948315271,pos,ns,0.002077857,0.00317437,0.654572838,0.513228164,pos,ns,0.289689519,0.000142435,0.000109166,1.304754482,0.192944203,pos,ns,0.91710216,Cd40lg,Cd40lg_Promoter,X,57212045,57212094,57212045,57212046,50,+,CGATTGTGCGCTCTTAACTAATCCTGAGTAAGGTGGCCACTTTGACAGTC,Promoter (<=1kb),20,57212143,57224042,11900,1,Cd40lg-201,-49,Cd40lg-201,Cd40lg,-49,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,4,21947,ENSMUSG00000031132,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14719,cg18683425,-0.00000565,0.00000643,-0.878492817,0.380356723,loss,ns,0.000000708,0.0000109,0.064862097,0.948325605,pos,ns,0.013656259,0.003199031,4.268873143,0.0000261,pos,ns,4.582613769,-0.000404561,0.000110014,-3.677349019,0.000277718,neg,ns,0.844529243,Rnf165,Rnf165_threeUTR,18,77458560,77458609,77458560,77458561,50,+,CGATATCTACAAGTTAGTCATAAATTATGATTGTTAAATATAAGGCATTT,3' UTR,18,77456110,77565136,109027,2,Rnf165-201,106527,Rnf165-201;Rnf165-202;Rnf165-207,Rnf165;Rnf165;Rnf165,0;0;8539,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,10,21,225743,ENSMUSG00000025427,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9712,cg17354499,-0.00000672,0.00000295,-2.276253009,0.023512554,loss,ns,-0.000000325,0.00000502,-0.064771986,0.948397294,neg,ns,-0.001126293,0.001470235,-0.766063576,0.444221384,neg,ns,0.352400539,-0.00000534,0.0000506,-0.10562765,0.9159461,neg,ns,0.945846771,Sorcs1,Sorcs1_threeUTR,19,50189994,50190043,50190042,50190043,50,+,CATAAACCAACAACAGTAATAACATACAAGTTACATGTAAGTACAGGACG,3' UTR,19,50143299,50678646,535348,2,Sorcs1-205,488603,Sorcs1-205;Sorcs1-201;Sorcs1-208;Sorcs1-203;Sorcs1-204;Sorcs1-202;Sorcs1-207;Sorcs1-206,Sorcs1;Sorcs1;Sorcs1;Sorcs1;Sorcs1;Sorcs1;Sorcs1;Sorcs1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,5,8,58178,ENSMUSG00000043531,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23514,cg05396320,-0.0000365,0.00000683,-5.341099251,0.000000179,loss,yes,0.00000075,0.0000116,0.064660564,0.948485939,pos,ns,-0.00827094,0.003396973,-2.43479742,0.015464014,neg,ns,1.810677761,-0.00000706,0.000116822,-0.060426526,0.951854869,neg,ns,0.861618362,Cacna1c,Cacna1c_Exon,6,118741914,118741963,118741962,118741963,50,+,CTATGATGATTAGTGTAACAAAATAGATCCAGGGCCAGTCCCTTCCTACG,"Exon (Cacna1c-205/Cacna1c, exon 4 of 42)",6,118587240,119196231,608992,2,Cacna1c-207,454268,Cacna1c-207;Cacna1c-205;Cacna1c-215;Cacna1c-224;Cacna1c-225;Cacna1c-226;Cacna1c-227;Cacna1c-202;Cacna1c-201;Cacna1c-203;Cacna1c-212;Cacna1c-216;Cacna1c-210;Cacna1c-206;Cacna1c-208;Cacna1c-213;Cacna1c-217;Cacna1c-219;Cacna1c-220;Cacna1c-209;Cacna1c-204;Cacna1c-214;Cacna1c-222,Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,13,15,12288,ENSMUSG00000051331,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27520,cg13425116,-0.00000186,0.00000175,-1.064404115,0.287974041,loss,ns,0.000000191,0.00000297,0.064511488,0.948604539,pos,ns,-0.000477481,0.000869272,-0.54928857,0.58320288,neg,ns,0.23418034,0.00000879,0.0000299,0.294045413,0.768919983,pos,ns,0.97049109,Zfp64,Zfp64_Exon,2,168926861,168926910,168926861,168926862,50,-,CGCATGTGCCTTTTCAAGTCCGAGCTGATTTTGAACTTGGCGCTACAGAG,"Exon (Zfp64-201/Zfp64, exon 6 of 6)",2,168893331,168955587,62257,2,Zfp64-203,28677,Zfp64-203;Zfp64-201,Zfp64;Zfp64,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,11,22722,ENSMUSG00000027551,conserved gene and region,2,168926562,168926882,321,*,321,23,0.585669782,0.83792986,0.07165109,1.70E-14,CpGisland,TRUE,U10,Tr-S
7551,cg04612171,0.0000739,0.00000651,11.33788886,3.69E-25,gain,yes,0.000000713,0.0000111,0.064424672,0.948673609,pos,ns,0.00883896,0.003241901,2.726474497,0.006765781,pos,ns,2.169682061,-0.000066,0.000111489,-0.592093666,0.554219451,neg,ns,0.178418831,Sobp,Sobp_Intron,10,43171295,43171344,43171343,43171344,50,-,CCTACCTTCAAGCCTTGATATGTGATCCGAGGTGGGGGCTCAGGTTTCCG,"Intron (Sobp-201/Sobp, intron 1 of 6)",10,43002500,43174530,172031,2,Sobp-201,3186,Sobp-201;Sobp-202,Sobp;Sobp,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,19,109205,ENSMUSG00000038248,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
1899,cg14707052,-0.000000838,0.00000155,-0.541340466,0.588661749,loss,ns,-0.000000169,0.00000263,-0.064379849,0.948709269,neg,ns,0.000377015,0.000770456,0.48934051,0.624946703,pos,ns,0.204157019,0.0000163,0.0000265,0.616113004,0.538272065,pos,ns,0.045472788,Gnaq,Gnaq_fiveUTR,19,16133313,16133362,16133361,16133362,50,+,GCACTTTGGAAGAATGACTCTGGAGTCCATCATGGCGTGCTGCCTGAGCG,Promoter (<=1kb),19,16132831,16387463,254633,1,Gnaq-201,482,Gnaq-201;Gnaq-203,Gnaq;Gnaq,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,1,14682,ENSMUSG00000024639,mapped to different genes,19,16132740,16133781,1042,*,1042,166,0.784069098,1.05464301,0.159309021,1.83E-164,CpGisland,TRUE,U1,Pr-A
22132,cg20457653,-0.00000229,0.00000207,-1.106185172,0.269504069,loss,ns,0.000000225,0.00000351,0.064156734,0.948886777,pos,ns,-0.001497188,0.001029494,-1.454294937,0.14687626,neg,ns,0.833048394,-0.0000296,0.0000354,-0.835625552,0.404009171,neg,ns,0.953688566,Agbl4,Agbl4_Intron,4,111252112,111252161,111252160,111252161,50,+,CTGCTGATGCACTGAGCCACATGGCTAATACATCAGCTAAATGGATGCCG,"Intron (Agbl4-205/Agbl4, intron 5 of 8)",4,110397698,111567010,1169313,1,Agbl4-205,854414,Agbl4-205;Agbl4-206;Agbl4-201;Agbl4-202;Agbl4-207;Agbl4-209,Agbl4;Agbl4;Agbl4;Agbl4;Agbl4;Agbl4,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,16,78933,ENSMUSG00000061298,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4778,cg09129151,0.0000355,0.00000566,6.271625781,1.20E-09,gain,yes,0.000000616,0.00000962,0.064041828,0.948978197,pos,ns,0.008210583,0.002818317,2.913292785,0.003836327,pos,ns,2.416084326,0.0000286,0.0000969,0.295017925,0.768177667,pos,ns,0.12963626,Mecom,Mecom_Intron,3,30514044,30514093,30514044,30514045,50,-,CGTGCCGGAGTAAAAGTGAAAAGGGAGCCTTAGGCAAAAGGAAATTACTG,"Intron (Mecom-208/Mecom, intron 2 of 8)",3,29977344,30548008,570665,2,Mecom-208,33915,Mecom-212;Mecom-213;Mecom-207;Mecom-208;Mecom-211;Mecom-209,Mecom;Mecom;Mecom;Mecom;Mecom;Mecom,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,57,80,14013,ENSMUSG00000027684,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9873,cg24290103,-0.00000131,0.0000018,-0.725848355,0.468479365,loss,ns,0.000000196,0.00000306,0.064032214,0.948985846,pos,ns,-0.000516953,0.00089589,-0.577027638,0.564339576,neg,ns,0.248459493,-0.00000817,0.0000308,-0.26527831,0.790971387,neg,ns,0.060637837,Elf2,Elf2_Intron,3,51277001,51277050,51277001,51277002,50,+,CGAGGCAGGTTACTCTCCAAGGTGATCACTTCCTGATTCGTCGCCTCCAT,"Intron (Elf2-212/Elf2, intron 4 of 9)",3,51252720,51340663,87944,2,Elf2-212,63613,Elf2-212;Elf2-208;Elf2-201;Elf2-202;Elf2-203;Elf2-204;Elf2-206;Elf2-213;Elf2-207;Elf2-209;Elf2-211;Elf2-205,Elf2;Elf2;Elf2;Elf2;Elf2;Elf2;Elf2;Elf2;Elf2;Elf2;Elf2;Elf2,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,3,69257,ENSMUSG00000037174,conserved gene and region,3,51276362,51277002,641,*,641,92,0.761310452,0.99254397,0.143525741,2.94E-86,CpGisland,TRUE,U1,Pr-A
13122,cg12004878,0.000000696,0.00000108,0.641687646,0.521550189,gain,ns,0.000000118,0.00000184,0.064030419,0.948987274,pos,ns,0.000000702,0.000539879,0.001299439,0.998964034,pos,ns,0.000450148,0.00000943,0.0000186,0.508013346,0.611805262,pos,ns,0.027382802,Nsun2,Nsun2_Exon,13,69534095,69534144,69534095,69534096,50,-,CGCCCTGCGAGGTCTCCCAGATCTGCATCCACAGGGCATTGGCCGGCCCC,Promoter (<=1kb),13,69533746,69615468,81723,1,Nsun2-206,349,Nsun2-206;Nsun2-207;Tent4a-202;Tent4a-201;Tent4a-204;Tent4a-203,Nsun2;Nsun2;Tent4a;Tent4a;Tent4a;Tent4a,0;0;0;-231;-1663;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,28114,ENSMUSG00000021595,mapped to different genes,13,69533393,69535240,1848,*,1848,290,0.762445887,1.08430956,0.156926407,1.94E-284,CpGisland,TRUE,U1,Pr-A
20130,cg19262465,0.00000196,0.00000342,0.573986238,0.566393332,gain,ns,-0.000000371,0.0000058,-0.064002755,0.949009284,neg,ns,-0.00162302,0.001699689,-0.954892481,0.340376087,neg,ns,0.468040959,0.0000487,0.0000585,0.833580794,0.405159064,pos,ns,0.05977148,Calcoco1,Calcoco1_Intergenic_downstream,15,102694456,102694505,102694456,102694457,50,+,CGAGTTTGACAGCGAATTCATTCCGAGCGGGGAGGGTGATTTATTCTTCA,Distal Intergenic,15,102706972,102709902,2931,2,Calcoco1-203,15397,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,29,67488,ENSMUSG00000023055,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
5254,cg21674390,-0.0000315,0.00000654,-4.816506006,0.00000229,loss,ns,-0.000000711,0.0000111,-0.063979135,0.949028075,neg,ns,-0.005817282,0.003254214,-1.78761522,0.074814838,neg,ns,1.126012262,-0.00000739,0.000111912,-0.066071801,0.947363251,neg,ns,0.898198966,Trdn,Trdn_Exon,10,33200180,33200229,33200180,33200181,50,-,CGATATATGATTGACATATTTGTCCATGGGGATTTAAAACCAGGTATTCC,"Exon (Trdn-201/Trdn, exon 9 of 38)",10,33083483,33476709,393227,1,Trdn-201,116697,Trdn-208;Trdn-201;Trdn-202;Trdn-206;Trdn-207;Trdn-205;Trdn-204,Trdn;Trdn;Trdn;Trdn;Trdn;Trdn;Trdn,119626;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,76757,ENSMUSG00000019787,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19628,cg24726068,-0.0000189,0.00000602,-3.147462231,0.001807086,loss,ns,-0.000000653,0.0000102,-0.063842178,0.94913704,neg,ns,-0.003688379,0.002995655,-1.231242759,0.219165344,neg,ns,0.659228119,0.0000872,0.00010302,0.845979101,0.398216928,pos,ns,0.948896747,Kcne3,Kcne3_Exon,7,100184439,100184488,100184439,100184440,50,+,CGTAGTGACCCCTATCATGTGTATATCAAGAACCGTGTGTCTATGATCTA,"Exon (Kcne3-203/Kcne3, exon 5 of 5)",7,100176679,100184869,8191,1,Kcne3-203,7760,Kcne3-208;Kcne3-203;Kcne3-205;Kcne3-206;Kcne3-201;Kcne3-202;Kcne3-204;Kcne3-207,Kcne3;Kcne3;Kcne3;Kcne3;Kcne3;Kcne3;Kcne3;Kcne3,7937;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,57442,ENSMUSG00000035165,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6460,cg17919530,0.0000166,0.0000051,3.261686815,0.001230942,gain,ns,0.000000553,0.00000867,0.063816156,0.949157744,pos,ns,0.007648773,0.002539305,3.012152781,0.00280763,pos,ns,2.55166015,-0.000240127,0.0000873,-2.749761828,0.006313987,neg,ns,0.087366268,Zfp536,Zfp536_Intron,7,37346311,37346360,37346359,37346360,50,-,CTGTTTGACTAGAATTGTTGGCACATTTCAGCTAAGCCTCGCGCGCCTCG,"Intron (Zfp536-211/Zfp536, intron 3 of 3)",7,37318024,37568390,250367,2,Zfp536-211,222030,Zfp536-211,Zfp536,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,73,112,243937,ENSMUSG00000043456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
490,cg03378585,0.000000154,0.00000152,0.101092301,0.919542541,gain,ns,0.000000165,0.00000259,0.063728537,0.949227455,pos,ns,0.00055141,0.000758791,0.726695821,0.467960683,pos,ns,0.329790634,-0.0000216,0.0000261,-0.829361759,0.40753789,neg,ns,0.957282648,Celf2,Celf2_threeUTR,2,6541851,6541900,6541851,6541852,50,+,CGCAGAGAGAGAAACAAGTATTAGGAAAATGGTTTAATATTGGAGACAGA,3' UTR,2,6539694,7396000,856307,2,Celf2-201,854100,Celf2-201;Celf2-202;Celf2-204;Celf2-214;Celf2-206;Celf2-226;Celf2-223;Celf2-224;Celf2-221;Celf2-205;Celf2-211;Celf2-213;Celf2-225;Celf2-228;Celf2-216,Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2;Celf2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,24,14007,ENSMUSG00000002107,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10897,cg27503226,-0.0000445,0.00000734,-6.066778077,3.80E-09,loss,yes,0.000000794,0.0000125,0.063672928,0.949271698,pos,ns,-0.011905341,0.00365475,-3.257497776,0.001248638,neg,ns,2.903563593,0.000281232,0.000125687,2.23756663,0.025959564,pos,ns,0.926788963,Pcbd2,Pcbd2_Intron,13,55754534,55754583,55754534,55754535,50,+,CGGGCTCTAATGCACACTGTTTTACACGTTAACGGTTTTGAAGTTCCAGG,"Intron (Pcbd2-201/Pcbd2, intron 2 of 3)",13,55727368,55776828,49461,1,Pcbd2-201,27166,Pcbd2-201;Pcbd2-202,Pcbd2;Pcbd2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,5,72562,ENSMUSG00000021496,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4374,cg01693108,-0.00000189,0.000000969,-1.948043732,0.052312012,loss,ns,0.000000105,0.00000165,0.063621193,0.949312859,pos,ns,0.001117684,0.000482371,2.317064497,0.021151555,pos,ns,1.674657694,-0.0000409,0.0000166,-2.467678525,0.014139055,neg,ns,0.029375431,Srpk1,Srpk1_fiveUTR,17,28621982,28622031,28622030,28622031,50,-,TTGGGCTTTGTCCTTCTTGGCCTTGGTCCTTTTCTTTCGGGCCTGGAGCG,Promoter (<=1kb),17,28587648,28622487,34840,2,Srpk1-212,456,Srpk1-212;Srpk1-204;Srpk1-211;Srpk1-213;Srpk1-210;Srpk1-208;Srpk1-206;Srpk1-202,Srpk1;Srpk1;Srpk1;Srpk1;Srpk1;Srpk1;Srpk1;Srpk1,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,4,20815,ENSMUSG00000004865,conserved gene and region,17,28622019,28622744,726,*,726,91,0.732782369,0.940146858,0.125344353,5.22E-79,CpGisland,TRUE,U1,Pr-A
24019,cg03401594,-0.00000121,0.000000511,-2.375531146,0.01813148,loss,ns,-5.51E-08,0.000000868,-0.063520423,0.949393035,neg,ns,-0.000103022,0.000254285,-0.40514414,0.685651003,neg,ns,0.163896884,-0.0000101,0.00000874,-1.15820778,0.247670755,neg,ns,0.007711256,Banp,Banp_fiveUTR,8,121950627,121950676,121950627,121950628,50,+,CGAGAATTCCGCAGCCCACACGGTAATTGCAGCTCCCGCAGCCGGTCGCG,Promoter (<=1kb),8,121949750,121997183,47434,1,Banp-207,877,Banp-207;Banp-202;Banp-204;Banp-208;Banp-201;Banp-216;Banp-215;Banp-205;Galnt2l-201,Banp;Banp;Banp;Banp;Banp;Banp;Banp;Banp;Galnt2l,0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,4,53325,ENSMUSG00000025316,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
23072,cg02897209,-0.00000765,0.00000478,-1.601354345,0.110316956,loss,ns,-0.000000515,0.00000812,-0.063455186,0.94944494,neg,ns,0.004363143,0.002377601,1.835103611,0.06744832,pos,ns,1.171028863,-0.00048254,0.0000818,-5.901509845,9.44E-09,neg,yes,0.892382778,Rnf220,Rnf220_threeUTR,4,117276493,117276542,117276493,117276494,50,+,CGGCCGAGATAAACTGATCAACCACAACGGGCTGGAATGAATTTATGACA,3' UTR,4,117271463,117497052,225590,2,Rnf220-201,220510,Rnf220-201;Rnf220-203;Rnf220-212;Rnf220-202;Rnf220-205;Rnf220-214;Rnf220-211;Rnf220-209;Rnf220-213,Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220;Rnf220,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,152,66743,ENSMUSG00000028677,conserved gene but different region,4,117276354,117276521,168,*,168,15,0.654761905,0.85106383,0.089285714,5.14E-11,CpGisland,TRUE,U10,Tr-S
6370,cg16116529,-0.000000295,0.00000337,-0.087525427,0.930310386,loss,ns,0.000000363,0.00000573,0.063300455,0.949568049,pos,ns,0.000662882,0.001679686,0.394646508,0.69337516,pos,ns,0.159031721,-0.0000254,0.0000578,-0.439904091,0.660313105,neg,ns,0.91963492,Dgki,Dgki_Exon,6,37050169,37050218,37050169,37050170,50,-,CGCATCTTTTGGCCCTTCCTGAGAAAGATCAAAGACTTGCCGTGGATTCA,"Exon (Dgki-203/Dgki, exon 11 of 34)",6,36846022,37299974,453953,2,Dgki-203,249756,Dgki-203;Dgki-202;Dgki-205;Dgki-208;Dgki-201;Dgki-207,Dgki;Dgki;Dgki;Dgki;Dgki;Dgki,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,7,320127,ENSMUSG00000038665,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14162,cg19133511,0.0000609,0.0000107,5.70347886,2.74E-08,gain,yes,-0.00000115,0.0000181,-0.063274807,0.949588456,neg,ns,0.021150723,0.005314978,3.97945633,0.0000861,pos,ns,4.065151135,-0.000645013,0.000182782,-3.528872995,0.000480538,neg,ns,0.327185017,Gm27233,Gm27233_Intergenic_downstream,9,74711836,74711885,74711884,74711885,50,-,GGTCAATTTTTTCCCCTGCCATTTCCTTTGCTCACACCATGCTGACCACG,Downstream (2-3kb),9,74709262,74709568,307,1,Gm27233-201,2623,Gm27233-201,Gm27233,2574,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,2,4,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22997,cg20836420,0.0000127,0.00000332,3.81975955,0.000161366,gain,ns,0.000000357,0.00000565,0.063151711,0.949686396,pos,ns,-0.000420964,0.001654724,-0.25440155,0.799354023,neg,ns,0.097260835,0.0000515,0.0000569,0.904620982,0.366368696,pos,ns,0.058574748,Cygb,Cygb_fiveUTR,11,116653767,116653816,116653767,116653768,50,+,CGACACCTACCTCACCAGGATGGCCACCCCCACGTCCTCGCAGTTGGCAT,Promoter (<=1kb),11,116645595,116654313,8719,2,Cygb-201,497,Cygb-201;Prcd-203;Prcd-205;Prcd-201;Prcd-202;Prcd-204,Cygb;Prcd;Prcd;Prcd;Prcd;Prcd,0;0;0;0;0;-3340,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,1,114886,ENSMUSG00000020810,conserved gene but different region,11,116653600,116654121,522,*,522,56,0.708812261,0.854212326,0.107279694,1.39E-44,CpGisland,TRUE,U3,Pr-B
12968,cg14033212,-0.0000217,0.00000796,-2.723586643,0.006823797,loss,ns,0.000000853,0.0000135,0.063082139,0.949741751,pos,ns,-0.004351531,0.003961911,-1.098341398,0.272907766,neg,ns,0.563984106,0.000197036,0.00013625,1.44613472,0.149149679,pos,ns,0.83747223,Erbb4,Erbb4_Intron,1,68865457,68865506,68865457,68865458,50,-,CGGTGAACCGGCAACCTTAGCATAATTAAGACAAGCCTGAGTGCTTGCCA,"Intron (Erbb4-201/Erbb4, intron 1 of 27)",1,68032186,69107756,1075571,2,Erbb4-201,242250,Erbb4-201;Erbb4-202;Erbb4-205,Erbb4;Erbb4;Erbb4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,13,13869,ENSMUSG00000062209,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23580,cg09925014,-0.00000767,0.00000753,-1.019235112,0.308886128,loss,ns,0.000000806,0.0000128,0.063030698,0.949782681,pos,ns,-0.001767084,0.003746495,-0.471663245,0.637498969,neg,ns,0.195520513,0.00012433,0.000128842,0.964986205,0.335303893,pos,ns,0.387114269,Gli2,Gli2_Intron,1,119051867,119051916,119051915,119051916,50,+,TTTACAACTGCTCCCTTTATCTGAAGCTGTCGGGATTAAACCTTCACACG,"Intron (Gli2-201/Gli2, intron 1 of 13)",1,118834132,119053619,219488,2,Gli2-201,1703,Gli2-201;Gli2-203;Gli2-204;Gli2-205;Gli2-206;Gli2-208;Gli2-207;Gli2-209,Gli2;Gli2;Gli2;Gli2;Gli2;Gli2;Gli2;Gli2,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,4,14633,ENSMUSG00000048402,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
20861,cg10750445,0.00000137,0.0000014,0.980837637,0.327437659,gain,ns,0.00000015,0.00000238,0.062972299,0.949829146,pos,ns,0.001131381,0.000696762,1.623769028,0.105441467,pos,ns,0.976988559,-0.0000442,0.000024,-1.842944836,0.066291667,neg,ns,0.963022528,Ctcf,Ctcf_Exon,8,105670277,105670326,105670277,105670278,50,+,CGTTTCAGTGCAGTTTGTGCAGTTATGCCAGCAGGGACACATACAAGCTG,"Exon (Ctcf-204/Ctcf, exon 4 of 10)",8,105636568,105681647,45080,1,Ctcf-204,33709,Ctcf-204;Ctcf-201,Ctcf;Ctcf,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,8,13018,ENSMUSG00000005698,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16031,cg06053159,-0.00000167,0.00000162,-1.033573966,0.302141008,loss,ns,-0.000000173,0.00000275,-0.062859787,0.949918667,neg,ns,-0.000204961,0.000804653,-0.254719628,0.799108547,neg,ns,0.097394224,-0.00000302,0.0000277,-0.109162869,0.913143938,neg,ns,0.959243995,Acaca,Acaca_Intron,11,84271979,84272028,84271979,84271980,50,-,CGGAGTGATTGTAAGTAACGCTTGCCTTAAGAATCTCATTATTGGAACAC,"Intron (Acaca-202/Acaca, intron 25 of 55)",11,84173122,84401651,228530,1,Acaca-202,98857,Acaca-202;Acaca-201,Acaca;Acaca,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,28,28,107476,ENSMUSG00000020532,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19114,cg16318223,0.0000373,0.000006,6.212838285,1.67E-09,gain,yes,0.000000641,0.0000102,0.062851962,0.949924893,pos,ns,-0.002037524,0.002987595,-0.681994589,0.4957516,neg,ns,0.304735876,0.000122144,0.000102743,1.188827885,0.235417267,pos,ns,0.094257808,Gm10320,Gm10320_Intergenic_upstream,13,98503537,98503586,98503537,98503538,50,-,CGGCAGACCCCCGCTCTGGCATTATTTTCTAGTGATGTAATAATTTCCCT,Distal Intergenic,13,98489348,98492001,2654,2,Gm10320-201,-11585,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,7,101055909,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
10440,cg12006795,-0.0000198,0.00000628,-3.150987274,0.001786093,loss,ns,-0.00000067,0.0000107,-0.062775347,0.949985853,neg,ns,-0.007736003,0.003125072,-2.475464022,0.013840472,neg,ns,1.858849105,0.0000839,0.000107471,0.780966255,0.435418309,pos,ns,0.878364282,Septin8,Septin8_Exon,11,53548389,53548438,53548437,53548438,50,+,GCTGGTGGCCCGCCATACAGTGCTGCAGCTGCCTGGTCAGGGATGCGACG,"Exon (Septin8-204/Septin8, exon 10 of 10)",11,53519770,53549565,29796,1,Septin8-204,28619,Septin8-201;Septin8-204;Septin8-202,Septin8;Septin8;Septin8,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,9,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15280,cg18406453,0.00000245,0.00000418,0.585905402,0.558365406,gain,ns,-0.000000446,0.00000711,-0.062735988,0.95001717,neg,ns,-0.002799675,0.002082382,-1.344458017,0.17978327,neg,ns,0.745250725,0.0000124,0.0000716,0.172592423,0.863084434,pos,ns,0.808949166,Actn1,Actn1_Exon,12,80170694,80170743,80170694,80170695,50,+,CGTTGCCAATATCATAACCCAAGCTGATGAGGCAGGCTTTGAACTCCTCG,"Exon (Actn1-201/Actn1, exon 19 of 21)",12,80167547,80260371,92825,2,Actn1-201,89628,Actn1-201;Actn1-206;Actn1-202;Actn1-205,Actn1;Actn1;Actn1;Actn1,0;0;0;-543,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,10,109711,ENSMUSG00000015143,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26847,cg25597674,-0.0000102,0.00000272,-3.748300336,0.000212339,loss,ns,0.000000289,0.00000462,0.062568298,0.950150597,pos,ns,-0.000127792,0.00135332,-0.09442858,0.924829719,neg,ns,0.033938223,-0.0000123,0.0000465,-0.264366013,0.79167357,neg,ns,0.950960792,Asxl1,Asxl1_Exon,2,153397914,153397963,153397914,153397915,50,-,CGTCAGTCCTTTCGTAACACAATTGAAAGTGTTCACACCGAAAAGCCACA,"Exon (Asxl1-205/Asxl1, exon 11 of 12)",2,153345829,153404007,58179,1,Asxl1-205,52085,Asxl1-205;Asxl1-201;Asxl1-203,Asxl1;Asxl1;Asxl1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,8,228790,ENSMUSG00000042548,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16566,cg11182832,-0.00000231,0.000000985,-2.341209941,0.019854692,loss,ns,0.000000105,0.00000167,0.062551087,0.950164291,pos,ns,-0.000308272,0.000490111,-0.628983196,0.529823259,neg,ns,0.27586898,-0.00000975,0.0000169,-0.578296148,0.563484059,neg,ns,0.034335582,Fos,Fos_Promoter,12,85474582,85474631,85474630,85474631,50,+,TGTGTAAGGCAGTTTCATTGATAAAAAGCGAGTTCATTCTGGAGACTCCG,Promoter (<=1kb),12,85473890,85477273,3384,1,Fos-201,692,Fos-201;Fos-203;Fos-204;Fos-202,Fos;Fos;Fos;Fos,0;-60;-60;-280,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,3,5,14281,ENSMUSG00000021250,conserved gene and region,12,85474574,85474857,284,*,284,18,0.528169014,0.941609873,0.063380282,1.46E-10,CpGisland,TRUE,NA,NRS
16156,cg02211939,-0.00000155,0.00000323,-0.481711802,0.630350575,loss,ns,-0.000000343,0.00000548,-0.062540405,0.950172791,neg,ns,-0.004057817,0.001605594,-2.52729913,0.01199128,neg,ns,1.921134438,0.00000784,0.0000552,0.142055155,0.887128716,pos,ns,0.908977987,Bnc2,Bnc2_Intron,4,84536772,84536821,84536772,84536773,50,+,CGGGATGCAGGATATGGGATGTGCTTCCTATCAACAGATTAACACTTCAT,"Intron (Bnc2-201/Bnc2, intron 3 of 7)",4,84275095,84675034,399940,2,Bnc2-201,138213,Bnc2-201;Bnc2-202;Bnc2-214;Bnc2-215;Bnc2-206;Bnc2-211;Bnc2-217;Bnc2-207;Bnc2-212;Bnc2-203;Bnc2-209;Bnc2-221;Bnc2-204;Bnc2-220,Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,91,242509,ENSMUSG00000028487,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24398,cg24744369,0.00000994,0.00000514,1.935203869,0.05387461,gain,ns,-0.000000545,0.00000872,-0.062417415,0.950270651,neg,ns,0.005037979,0.002556113,1.970953015,0.049618554,pos,ns,1.304355894,-0.000219375,0.0000879,-2.495601671,0.013093963,neg,ns,0.919168148,Slc12a1,Slc12a1_Exon,2,125166164,125166213,125166212,125166213,50,+,TCTATTACTGGGTTGTCAACTTCTGCGATAGCAACTAACGGGTTTGTTCG,"Exon (Slc12a1-204/Slc12a1, exon 5 of 5)",2,125152505,125230002,77498,1,Slc12a1-202,13659,Slc12a1-202;Slc12a1-204;Slc12a1-203;Slc12a1-201,Slc12a1;Slc12a1;Slc12a1;Slc12a1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,20495,ENSMUSG00000027202,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13261,cg11988982,-0.0000377,0.0000125,-3.024313459,0.002700321,loss,ns,0.00000132,0.0000212,0.062342943,0.950329907,pos,ns,-0.005898571,0.006206581,-0.950373648,0.34266277,neg,ns,0.465133079,-0.000246993,0.000213444,-1.157180829,0.248089353,neg,ns,0.066183843,Eif5a,Eif5a_fiveUTR,11,69921307,69921356,69921307,69921308,50,-,CGACTCCCCACTGACCAACCAAGCAGCCCTATGACAGCCGCGCAAGCGTG,Promoter (<=1kb),11,69916720,69921386,4667,2,Eif5a-201,30,Eif5a-213;Eif5a-207;Eif5a-208;Eif5a-209;Eif5a-201;Eif5a-202;Eif5a-210;Eif5a-203;Eif5a-206;Eif5a-205;Eif5a-204;Eif5a-212;Eif5a-211;Gps2-202;Gps2-203;Gps2-201;Gps2-205,Eif5a;Eif5a;Eif5a;Eif5a;Eif5a;Eif5a;Eif5a;Eif5a;Eif5a;Eif5a;Eif5a;Eif5a;Eif5a;Gps2;Gps2;Gps2;Gps2,0;0;0;0;0;0;0;0;0;0;0;-3003;0;7419;7257;7115;5266,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,5,276770,ENSMUSG00000078812,conserved gene and region,11,69920805,69921519,715,*,715,93,0.721678322,1.102315866,0.13006993,1.81E-82,CpGisland,TRUE,U1,Pr-A
5057,cg02850837,0.00000394,0.00000171,2.300963752,0.022057007,gain,ns,0.000000181,0.00000291,0.062181679,0.950458225,pos,ns,0.001126689,0.000852938,1.320950199,0.187492212,pos,ns,0.727016768,6.85E-08,0.0000293,0.002334138,0.99813913,pos,ns,0.955803004,Iws1,Iws1_threeUTR,18,32093623,32093672,32093623,32093624,50,-,CGTGCTGTCAAGTTCAGCATTGAAGGCAACAGGATGCCCCTATAGGCCTG,3' UTR,18,32067741,32104328,36588,1,Iws1-201,25882,Iws1-201;Iws1-206;Iws1-203;Iws1-207;Iws1-205,Iws1;Iws1;Iws1;Iws1;Iws1,0;0;0;10357;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,1,73473,ENSMUSG00000024384,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20587,cg26575738,0.00000662,0.00000199,3.324377531,0.000992447,gain,ns,-0.00000021,0.00000338,-0.062165665,0.950470967,neg,ns,0.001814645,0.000991206,1.830744888,0.068098455,pos,ns,1.166862739,-0.0000236,0.0000341,-0.691072316,0.490037256,neg,ns,0.064943755,Wnt3,Wnt3_Promoter,11,103774015,103774064,103774063,103774064,50,-,GGCGCGTGATTGACAGGCTGAACTACAGACTCATCTCTTACCTTAGGCCG,Promoter (<=1kb),11,103774150,103817957,43808,1,Wnt3-201,-135,Wnt3-201,Wnt3,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,9,22415,ENSMUSG00000000125,conserved gene but different region,11,103774063,103774167,105,*,105,12,0.733333333,0.861833105,0.114285714,3.54E-10,CpGisland,TRUE,U3,Pr-B
24338,cg16317038,0.0000262,0.00000546,4.803130817,0.00000244,gain,ns,0.000000576,0.00000928,0.062100131,0.950523112,pos,ns,0.011377751,0.002719265,4.184127342,0.0000373,pos,ns,4.428075551,-0.000318011,0.0000935,-3.400626764,0.000760376,neg,ns,0.143963585,Pou3f1,Pou3f1_Intergenic_downstream,4,124672563,124672612,124672563,124672564,50,-,CGCAGGGACGCAGTTCACTGATGCTGATGAGGCAGCCAAAACAGACCCCA,Distal Intergenic,4,124656807,124660655,3849,1,Pou3f1-201,15805,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,11,85,18991,ENSMUSG00000090125,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
3955,cg21917735,-0.0000576,0.0000104,-5.557709233,0.000000059,loss,yes,-0.00000109,0.0000176,-0.062063176,0.950552517,neg,ns,-0.015564823,0.005159937,-3.016475558,0.002769044,neg,ns,2.557670095,0.000181045,0.00017745,1.020260456,0.308400502,pos,ns,0.830774449,Gm7847,Gm7847_Intergenic_upstream,18,25905027,25905076,25905027,25905028,50,-,CGCAAATGAAAGCGGCCGGCAAAGACAGATACTTCCCAGATTCTTATTAA,Distal Intergenic,18,25823581,25824357,777,2,Gm7847-201,-80719,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,22,665916,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4086,cg02423021,-0.00000112,0.00000103,-1.094042921,0.274785511,loss,ns,0.000000108,0.00000174,0.062013894,0.950591731,pos,ns,0.000429493,0.000510717,0.840961236,0.401017846,pos,ns,0.3968363,-0.0000202,0.0000176,-1.148610237,0.251602238,neg,ns,0.036072783,Smarca2,Smarca2_fiveUTR,19,26748482,26748531,26748482,26748483,50,-,CGTCACCAGTCGGAAACTGGGGGTTTGCTTCTGTGATTTATTTCATTATT,Promoter (<=1kb),19,26748514,26752024,3511,1,Smarca2-243,0,Smarca2-216;Smarca2-201;Smarca2-209;Smarca2-202;Smarca2-206;Smarca2-239;Smarca2-215;Smarca2-223;Smarca2-214;Smarca2-211;Smarca2-229;Smarca2-225;Smarca2-240;Smarca2-242;Smarca2-227;Smarca2-204;Smarca2-221;Smarca2-246;Smarca2-244;Smarca2-203;Smarca2-237;Smarca2-220;Smarca2-238;Smarca2-210;Smarca2-213;Smarca2-228;Smarca2-218;Smarca2-241;Smarca2-233;Smarca2-243;Smarca2-230;Smarca2-205;Smarca2-234;Smarca2-224;Smarca2-231;Smarca2-207;Smarca2-226,Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;-1758;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,6,8,67155,ENSMUSG00000024921,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16395,cg05884116,0.0000011,0.00000186,0.591736075,0.554458613,gain,ns,-0.000000196,0.00000317,-0.061982697,0.950616555,neg,ns,0.001679063,0.000928183,1.808978538,0.071423005,pos,ns,1.146161885,-0.0000555,0.0000319,-1.740073118,0.082838565,neg,ns,0.953496141,Trip12,Trip12_Exon,1,84814862,84814911,84814910,84814911,50,-,GTGTTCCTCTGTGAACGTCGCAGTGACCCCCCTGGATTGTTATTAGGCCG,"Exon (Trip12-201/Trip12, exon 2 of 41)",1,84721189,84839304,118116,2,Trip12-201,24393,Trip12-201;Trip12-206;Trip12-207;Trip12-205;Trip12-208;Trip12-211;Trip12-214;Trip12-210,Trip12;Trip12;Trip12;Trip12;Trip12;Trip12;Trip12;Trip12,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,11,14897,ENSMUSG00000026219,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17484,cg05441248,0.0000469,0.00000544,8.632024902,3.21E-16,gain,yes,-0.000000572,0.00000924,-0.061941738,0.950649146,neg,ns,0.009311336,0.002705875,3.44115482,0.000658699,pos,ns,3.181312918,-0.0000849,0.0000931,-0.912181431,0.362382031,neg,ns,0.119046225,Gm10493,Gm10493_Exon,17,90454849,90454898,90454897,90454898,50,+,AGGCACTGAATGATGCTTGCTGCTGCCATGGAAATGGTGGATGTGGTGCG,Promoter (<=1kb),17,90454889,90455498,610,1,Gm10493-201,0,Gm10493-201;Nrxn1-202;Nrxn1-207;Nrxn1-216;Nrxn1-204;Nrxn1-217;Nrxn1-209;Nrxn1-201;Nrxn1-213;Nrxn1-206;Nrxn1-221;Nrxn1-208;Nrxn1-222;Nrxn1-218;Nrxn1-226,Gm10493;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1;Nrxn1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,623954,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
4162,cg01816418,-0.00000212,0.00000227,-0.93435895,0.350845987,loss,ns,0.000000239,0.00000386,0.061894158,0.950687006,pos,ns,-0.000467006,0.001130934,-0.412938505,0.679937134,neg,ns,0.16753124,-0.0000359,0.0000389,-0.922540698,0.356964057,neg,ns,0.948681261,Itpr3,Itpr3_Exon,17,27091863,27091912,27091911,27091912,50,+,CCCAACAATGGGCAGAATGTCCTGGACATCATGGTCACTAAGCCCAACCG,"Exon (Itpr3-201/Itpr3, exon 14 of 58)",17,27057304,27122223,64920,1,Itpr3-201,34559,Itpr3-201,Itpr3,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,16440,ENSMUSG00000042644,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24187,cg14099956,-0.0000223,0.00000525,-4.258555541,0.0000273,loss,ns,-0.000000551,0.00000891,-0.061889398,0.950690793,neg,ns,-0.00487728,0.002610626,-1.868242059,0.062671516,neg,ns,1.2029298,-0.000035,0.0000898,-0.389663658,0.697052838,neg,ns,0.897138821,Tnrc6a,Tnrc6a_Exon,7,123188812,123188861,123188812,123188813,50,+,CGCTGCCTTCAACTAGTGCCTGGTCATCCATTCGTGCCTCCAACTACAAC,"Exon (Tnrc6a-201/Tnrc6a, exon 20 of 24)",7,123124177,123193987,69811,1,Tnrc6a-203,64635,Tnrc6a-203;Tnrc6a-201;Tnrc6a-205;Tnrc6a-208,Tnrc6a;Tnrc6a;Tnrc6a;Tnrc6a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,17,24,233833,ENSMUSG00000052707,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27932,cg11914037,-0.000031,0.00000622,-4.986651249,0.00000103,loss,yes,0.000000652,0.0000106,0.061741651,0.950808358,pos,ns,-0.009777394,0.003093329,-3.1607994,0.001728839,neg,ns,2.762245361,0.0000759,0.000106379,0.713080909,0.476332121,pos,ns,0.877185067,Rps6kc1,Rps6kc1_Intergenic_downstream,1,190654245,190654294,190654245,190654246,50,+,CGAAGCTAATAGTCTGATTGAGAGAAATCAGATGCAGTGGTTTGCCCAAT,Distal Intergenic,1,190808888,190810463,1576,2,Rps6kc1-207,156169,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,14,29,320119,ENSMUSG00000089872,conserved gene and region,1,190654118,190654246,129,*,129,9,0.558139535,0.895833333,0.069767442,0.00000752,CpGisland,TRUE,U15,NS
14164,cg11375458,0.0000864,0.00000723,11.94152385,2.69E-27,gain,yes,-0.000000757,0.0000123,-0.061647488,0.950883285,neg,ns,0.009913617,0.003599475,2.754184339,0.006231335,pos,ns,2.205418906,0.000105482,0.000123786,0.852136189,0.394796338,pos,ns,0.405152927,Hoxd3,Hoxd3_Intron,2,74714553,74714602,74714601,74714602,50,-,AAGACAGTATTTCACCCTGGGCTGGCAGGCAGCTGTTAGAGGTATTTACG,"Intron (Hoxd3-203/Hoxd3, intron 1 of 2)",2,74711927,74748271,36345,1,Hoxd3-203,2626,Hoxd3-203;Hoxd4-203,Hoxd3;Hoxd4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,24,15434,ENSMUSG00000079277,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
27638,cg05114194,-0.00000235,0.000000925,-2.537625951,0.011650335,loss,ns,9.69E-08,0.00000157,0.061639822,0.950889386,pos,ns,0.000250762,0.000460456,0.544594054,0.586424273,pos,ns,0.231788062,-0.000005,0.0000158,-0.315845805,0.752332088,neg,ns,0.024057184,Stx16,Stx16_fiveUTR,2,174077081,174077130,174077081,174077082,50,-,CGCTTTCTTGTTGTTGCGGAATAATTCCATCCAAAACCGGCAGCTGTTAG,Promoter (<=1kb),2,174076308,174092433,16126,1,Stx16-205,773,Stx16-205;Stx16-203;Stx16-204;Stx16-202;Stx16-201;Stx16-206,Stx16;Stx16;Stx16;Stx16;Stx16;Stx16,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,6,6,228960,ENSMUSG00000027522,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
1850,cg03126084,-0.000017,0.00000648,-2.62681455,0.009047108,loss,ns,0.000000678,0.000011,0.061611044,0.950912285,pos,ns,-0.002946753,0.003222897,-0.914318026,0.36126036,neg,ns,0.44217969,-0.0000612,0.000110835,-0.552616338,0.580924386,neg,ns,0.892666805,Psat1,Psat1_Intergenic_downstream,19,15584779,15584828,15584779,15584780,50,-,CGGATGGCATTTCATTACCGGGAAGATAATATTTTTGAATATGTTTCCTG,Distal Intergenic,19,15905130,15909712,4583,2,Psat1-204,324933,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,14,17,107272,ENSMUSG00000024640,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3630,cg24596806,0.0000214,0.00000297,7.199082066,4.61E-12,gain,yes,0.000000311,0.00000505,0.061599327,0.950921608,pos,ns,0.002091486,0.001478555,1.414546935,0.158204982,pos,ns,0.800779843,-0.0000291,0.0000508,-0.571321233,0.568195877,neg,ns,0.056627368,Mboat2,Mboat2_fiveUTR,12,24831688,24831737,24831688,24831689,50,+,CGAGGCCCGGCCATGGCCACCACCAGCACCACGGGCTCCACCCTGCTGCA,Promoter (<=1kb),12,24830879,24939302,108424,1,Mboat2-205,809,Mboat2-205;Mboat2-204;Mboat2-203;Mboat2-201;Mboat2-202;Mboat2-206,Mboat2;Mboat2;Mboat2;Mboat2;Mboat2;Mboat2,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,3,67216,ENSMUSG00000020646,conserved gene and region,12,24831110,24832174,1065,*,1065,127,0.74741784,0.856244817,0.119248826,7.44E-107,CpGisland,TRUE,NA,NRS
14689,cg17927488,0.0000297,0.0000038,7.816824472,8.52E-14,gain,yes,-0.000000397,0.00000645,-0.061517911,0.950986393,neg,ns,0.006150127,0.001890124,3.25382241,0.001264358,pos,ns,2.898130089,-0.000103353,0.000065,-1.590017713,0.112850079,neg,ns,0.083396913,Ctnna2,Ctnna2_Exon,6,77244958,77245007,77244958,77244959,50,+,CGCAGCGCAGGAAGCAAAAGCAGAAACAGACCATGCATCAGATGGCTGCC,"Exon (Lrrtm1-201/Lrrtm1, exon 2 of 3)",6,76881637,77979699,1098063,2,Ctnna2-204,734692,Ctnna2-204;Ctnna2-205;Ctnna2-202;Ctnna2-201;Lrrtm1-201;Lrrtm1-202;Lrrtm1-203;Lrrtm1-204,Ctnna2;Ctnna2;Ctnna2;Ctnna2;Lrrtm1;Lrrtm1;Lrrtm1;Lrrtm1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,16,24,12386,ENSMUSG00000063063,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
2223,cg09610735,-0.00000451,0.00000129,-3.486144765,0.000560774,loss,ns,-0.000000135,0.0000022,-0.061513693,0.950989749,neg,ns,-0.000477455,0.000644459,-0.740860963,0.459338546,neg,ns,0.337867109,0.0000129,0.0000222,0.581522212,0.561311151,pos,ns,0.047302171,Bmi1,Bmi1_Promoter,2,18676763,18676812,18676763,18676764,50,+,CGACACTAATTCCCAGGCCGCCCTTAAGGAATGAGGGGAGCACGTGACCC,Promoter (<=1kb),2,18677018,18686629,9612,1,Bmi1-201,-206,Bmi1-201;Bmi1-203;Bmi1-206;Bmi1-202;Bmi1-207;Bmi1-204;Bmi1-205;Commd3-212;Commd3-201;Commd3-210;Commd3-205;Commd3-211;Commd3-206;Commd3-203;Commd3-204;Commd3-207;Commd3-202;Commd3-208;Commd3-209,Bmi1;Bmi1;Bmi1;Bmi1;Bmi1;Bmi1;Bmi1;Commd3;Commd3;Commd3;Commd3;Commd3;Commd3;Commd3;Commd3;Commd3;Commd3;Commd3;Commd3,0;-468;-995;0;-3562;-4182;-4295;4379;4340;4330;4328;4327;4240;3105;2802;2678;2416;2339;2114,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,6,12151,ENSMUSG00000026739,conserved gene but different region,2,18676145,18676890,746,*,746,96,0.719839142,1.004713805,0.128686327,1.37E-84,CpGisland,TRUE,U1,Pr-A
20172,cg11094940,-0.0000181,0.0000109,-1.651393096,0.099670922,loss,ns,-0.00000114,0.0000186,-0.061467723,0.95102633,neg,ns,-0.00475535,0.005446902,-0.873037548,0.383318352,neg,ns,0.416440387,-0.000287413,0.000187318,-1.534354793,0.12596232,neg,ns,0.649466116,Gm49473,Gm49473_Intron,15,102806034,102806083,102806082,102806083,50,-,AATTTTCTTTCAAAGATTGTTTTTTCTGGAGCCTGTGATTTCTACTCTCG,"Intron (Gm36560-201/Gm36560-201, intron 1 of 1)",15,102795121,102795371,251,2,Gm49473-201,-10712,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,12,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3561,cg23713764,0.000003,0.00000365,0.822108096,0.41164724,gain,ns,-0.000000381,0.0000062,-0.061411723,0.951070891,neg,ns,-0.002256955,0.001815583,-1.243101992,0.214769609,neg,ns,0.668027174,0.0000645,0.0000624,1.032446633,0.302667721,pos,ns,0.923475415,Rprd1a,Rprd1a_Exon,18,24506829,24506878,24506877,24506878,50,+,CGCACTTCCAATTTATGCTCTTTCTCTGCAAGGGCTTCCTTTTGACAACG,"Exon (Rprd1a-201/Rprd1a, exon 6 of 7)",18,24484960,24530204,45245,2,Rprd1a-201,23326,Rprd1a-201;Rprd1a-203;Rprd1a-202,Rprd1a;Rprd1a;Rprd1a,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,225283,ENSMUSG00000040446,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18797,cg24984507,0.000000805,0.00000371,0.216787049,0.828516902,gain,ns,0.000000387,0.00000631,0.061389932,0.95108823,pos,ns,-0.004531641,0.001848745,-2.45119901,0.014789969,neg,ns,1.830032741,0.000128787,0.0000636,2.02564862,0.043657181,pos,ns,0.938036482,Arhgap23,Arhgap23_Exon,11,97463569,97463618,97463569,97463570,50,-,CGAGACCAAGAGGAGGCACGTGTTCCGGCTGACCACCGCTGACTTCTGTG,"Exon (Arhgap23-203/Arhgap23, exon 12 of 24)",11,97415533,97502402,86870,1,Arhgap23-203,48036,Arhgap23-203;Arhgap23-202;Arhgap23-204,Arhgap23;Arhgap23;Arhgap23,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,8,58996,ENSMUSG00000049807,mapped to different genes,11,97463388,97463699,312,*,312,36,0.692307692,0.98457223,0.115384615,4.29E-30,CpGisland,TRUE,U10,Tr-S
23630,cg24989443,-0.0000179,0.00000496,-3.607355635,0.000360448,loss,ns,-0.000000517,0.00000842,-0.061384018,0.951092936,neg,ns,-0.003669852,0.002466357,-1.48796452,0.137776737,neg,ns,0.860824105,-0.00000293,0.0000848,-0.034495046,0.972504593,neg,ns,0.928573569,Dpyd,Dpyd_Intron,3,119362120,119362169,119362168,119362169,50,+,TGCATACCACCAATACTTCTCATTAAAATGGCCACAGTTCACCAGTTTCG,"Intron (Dpyd-201/Dpyd, intron 20 of 22)",3,118562129,119432924,870796,1,Dpyd-201,799991,Dpyd-201,Dpyd,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,14,29,99586,ENSMUSG00000033308,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20548,cg00308441,-0.00000155,0.000000878,-1.770615256,0.0776074,loss,ns,-9.15E-08,0.00000149,-0.061340965,0.951127195,neg,ns,0.000217054,0.000437057,0.496626947,0.619804125,pos,ns,0.207745538,-0.00000931,0.000015,-0.619109197,0.536299125,neg,ns,0.027202831,Itga5,Itga5_fiveUTR,15,103366568,103366617,103366568,103366569,50,+,CGCTTCCTAAACCTCCCAGAGGCGAATGACTCAACGCGGGGAGGAGTTTG,Promoter (<=1kb),15,103344286,103366748,22463,2,Itga5-202,131,Itga5-202;Itga5-201,Itga5;Itga5,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,2,16402,ENSMUSG00000000555,mapped to different genes,15,103366201,103366823,623,*,623,58,0.722311397,0.716944444,0.093097913,2.59E-42,CpGisland,TRUE,U1,Pr-A
27673,cg12058720,-0.0000148,0.00000604,-2.456436309,0.014580284,loss,ns,0.000000628,0.0000103,0.061257588,0.951193541,pos,ns,-0.001368155,0.003005515,-0.455214923,0.649273276,neg,ns,0.187572472,-0.000117459,0.000103359,-1.136411573,0.256662075,neg,ns,0.857647168,Sdccag8,Sdccag8_Intron,1,176985912,176985961,176985912,176985913,50,-,CGTAAAGCTGTAGGCAGTATAGCAGAAGTACAGAAGCAGTTCAGCGCTAT,"Intron (Sdccag8-201/Sdccag8, intron 16 of 17)",1,176814660,177020437,205778,1,Sdccag8-201,171252,Sdccag8-201;Sdccag8-203,Sdccag8;Sdccag8,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,20,76816,ENSMUSG00000026504,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
433,cg00820579,-0.0000336,0.0000109,-3.097268317,0.002131798,loss,ns,0.00000113,0.0000184,0.061244839,0.951203687,pos,ns,-0.002806678,0.005402239,-0.519539681,0.603755198,neg,ns,0.219139117,-0.000337543,0.000185783,-1.816870885,0.070202419,neg,ns,0.791778029,Dync1i1,Dync1i1_Exon,6,5769677,5769726,5769725,5769726,50,+,ATACCTGTTATTTTCATTATTTAGTCCCAACCCCTATGTCTCCCTCCTCG,"Exon (Dync1i1-202/Dync1i1, exon 4 of 17)",6,5725639,6028039,302401,1,Dync1i1-203,44038,Dync1i1-203;Dync1i1-202;Dync1i1-204;Dync1i1-201;Dync1i1-205;Dync1i1-207,Dync1i1;Dync1i1;Dync1i1;Dync1i1;Dync1i1;Dync1i1,0;0;0;0;43859;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,9,13426,ENSMUSG00000029757,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1914,cg24221992,-0.00000289,0.00000465,-0.620576211,0.535334457,loss,ns,-0.000000484,0.0000079,-0.061237445,0.95120957,neg,ns,-0.004426957,0.002315577,-1.911815659,0.05682156,neg,ns,1.24548685,0.0000864,0.0000796,1.085010557,0.278760036,pos,ns,0.93824515,Vstm2a,Vstm2a_threeUTR,11,16281836,16281885,16281836,16281837,50,+,CGCAGGTGCGAGGATAGCTACAAGCCATGGACTTTCTGTCCTGCTTCTTG,3' UTR,11,16257724,16284186,26463,1,Vstm2a-201,24112,Vstm2a-201;Vstm2a-202;Vstm2a-205;Vstm2a-204;Vstm2a-203,Vstm2a;Vstm2a;Vstm2a;Vstm2a;Vstm2a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,7,211739,ENSMUSG00000048834,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10797,cg12064749,0.0000244,0.00000383,6.39193067,6.01E-10,gain,yes,0.000000397,0.0000065,0.061052752,0.951356539,pos,ns,-0.000286316,0.001903777,-0.150393658,0.880551852,neg,ns,0.055245065,0.000105263,0.0000655,1.607786805,0.108899846,pos,ns,0.110004863,Prr7,Prr7_Exon,13,55472936,55472985,55472984,55472985,50,+,AGCTTGGCGTCTGCCGGTCTCCATCCCCTTGTTCGGGAGGACTACAGCCG,"Exon (Prr7-201/Prr7, exon 3 of 3)",13,55464267,55473154,8888,1,Prr7-201,8669,Dbn1-201;Dbn1-203;Dbn1-202;Dbn1-206;Prr7-201,Dbn1;Dbn1;Dbn1;Dbn1;Prr7,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,6,432763,ENSMUSG00000034686,conserved gene and region,13,55471446,55473041,1596,*,1596,178,0.713032582,0.884290343,0.111528822,1.30E-143,CpGisland,TRUE,U3,Pr-B
12931,cg13695149,0.0000316,0.00000343,9.202784673,5.33E-18,gain,yes,0.000000356,0.00000583,0.061041506,0.951365488,pos,ns,0.003602522,0.001707486,2.109839783,0.035673337,pos,ns,1.447656267,0.0000398,0.0000587,0.677045544,0.498881966,pos,ns,0.09216234,Ntn1,Ntn1_Exon,11,68385731,68385780,68385779,68385780,50,+,GTGCGGGAACTGCAGGTAGTTCTCGGACTGCCAGCACGTCAGGTTGTGCG,"Exon (Ntn1-201/Ntn1, exon 2 of 7)",11,68209364,68386826,177463,2,Ntn1-201,1046,Ntn1-201;Ntn1-202;Ntn1-203,Ntn1;Ntn1;Ntn1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,6,18208,ENSMUSG00000020902,conserved gene and region,11,68385706,68386519,814,*,814,88,0.705159705,0.879913522,0.108108108,4.89E-70,CpGisland,TRUE,U3,Pr-B
6888,cg19323953,-0.000002,0.0000055,-0.364210261,0.715949299,loss,ns,-0.00000057,0.00000934,-0.060963615,0.95142747,neg,ns,0.006693532,0.002737164,2.445426035,0.01502419,pos,ns,1.823208923,-0.00030476,0.0000941,-3.237619265,0.001335874,neg,ns,0.890629355,Slc35b3,Slc35b3_Intergenic_upstream,13,39297197,39297246,39297245,39297246,50,-,ATGGATGGGATTTCATTTAGTCTGTCTTCTCCCTTTCCAGTTCAGATGCG,Distal Intergenic,13,38932136,38960875,28740,2,Slc35b3-201,-336371,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,9,11,108652,ENSMUSG00000021432,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13206,cg22562422,0.0000579,0.00000592,9.778561236,7.38E-20,gain,yes,-0.000000613,0.0000101,-0.060912275,0.951468325,neg,ns,0.010546456,0.002948228,3.577218822,0.000402772,pos,ns,3.394941092,-0.000128228,0.000101389,-1.264711963,0.206924547,neg,ns,0.097234635,Foxb1,Foxb1_fiveUTR,9,69760884,69760933,69760884,69760885,50,+,CGGTGACAGGAGCAGAAAAGACCCCTGTAGCGGCGCTTCATTAATGTGCC,Promoter (<=1kb),9,69757710,69760940,3231,2,Foxb1-201,7,Foxb1-201,Foxb1,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,21,64290,ENSMUSG00000059246,conserved gene but different region,9,69760569,69760991,423,*,423,38,0.643026005,0.879754803,0.089834515,2.59E-27,CpGisland,TRUE,U13,Hc-P
11762,cg23602865,-0.00000227,0.000000974,-2.334680282,0.020198334,loss,ns,-0.000000101,0.00000166,-0.06083853,0.951527007,neg,ns,0.000162519,0.000484946,0.335128231,0.737755018,pos,ns,0.132087828,-0.00000383,0.0000167,-0.229402019,0.818707746,neg,ns,0.028421636,Mbnl1,Mbnl1_Intron,3,60528027,60528076,60528075,60528076,50,+,GGTCAGGAGAATGTACCATTTGTAAACACCCCTTTCCTTTTTTATTCACG,"Intron (Mbnl1-222/Mbnl1, intron 2 of 2)",3,60472830,60595764,122935,1,Mbnl1-222,55197,Mbnl1-222;Mbnl1-221;Mbnl1-216;Mbnl1-220;Mbnl1-211;Mbnl1-204;Mbnl1-201;Mbnl1-209;Mbnl1-202;Mbnl1-225;Mbnl1-217;Mbnl1-203;Mbnl1-218;Mbnl1-208;Mbnl1-219;Mbnl1-214;Mbnl1-207;Mbnl1-205;Mbnl1-212,Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1;Mbnl1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,36,56758,ENSMUSG00000027763,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23124,cg09773516,0.0000032,0.00000486,0.658484159,0.510715818,gain,ns,0.000000502,0.00000825,0.060823215,0.951539195,pos,ns,-0.002869656,0.002416643,-1.187455461,0.235957083,neg,ns,0.627166982,0.0000975,0.0000831,1.173674761,0.24142625,pos,ns,0.895697892,Rnf220,Rnf220_Intron,4,117315016,117315065,117315064,117315065,50,-,GGGCCAGAGCAATGCGGCTGGTTTTATTAATACGTCAAATACATTATCCG,"Intron (Rnf220-201/Rnf220, intron 2 of 14)",4,117271463,117497052,225590,2,Rnf220-201,181987,Rnf220-201;Rnf220-202;Rnf220-207,Rnf220;Rnf220;Rnf220,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,4,117314991,117315152,162,*,162,10,0.5,0.995085995,0.061728395,0.0000055,CpGisland,TRUE,U13,Hc-P
20857,cg24913251,0.00000353,0.00000493,0.716380552,0.474295722,gain,ns,0.000000509,0.00000837,0.060811183,0.951548769,pos,ns,0.004035835,0.002452401,1.645667048,0.100845797,pos,ns,0.996342198,-0.000179154,0.0000843,-2.124238012,0.034441535,neg,ns,0.902746642,Kcnd3,Kcnd3_Exon,3,105666953,105667002,105667001,105667002,50,-,GTCCTGTAGGGGTTGTCCTATCTTGTGGATGATCCCCTGTTATCTGTACG,"Exon (Kcnd3-204/Kcnd3, exon 5 of 5)",3,105452330,105674002,221673,1,Kcnd3-202,214623,Kcnd3-202;Kcnd3-204;Kcnd3-203;Kcnd3-201;Kcnd3-205,Kcnd3;Kcnd3;Kcnd3;Kcnd3;Kcnd3,0;0;0;0;-2003,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,9,56543,ENSMUSG00000040896,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14328,cg26667628,0.0000727,0.0000153,4.754291872,0.00000305,gain,ns,-0.00000158,0.000026,-0.06079624,0.95156066,neg,ns,0.033782661,0.007606944,4.441029233,0.0000125,pos,ns,4.904165795,-0.000576812,0.000261602,-2.204922225,0.02819361,neg,ns,0.403909644,Hic1,Hic1_Exon,11,75167428,75167477,75167428,75167429,50,-,CGATGATCACGTCGCACAAGAAGCCCTTGGTGCGCTGGTTGTTGAGCTGC,"Exon (Hic1-201/Hic1, exon 2 of 2)",11,75164565,75169519,4955,2,Hic1-201,2042,Hic1-201;Hic1-202;Smg6-201;Smg6-202;Smg6-206,Hic1;Hic1;Smg6;Smg6;Smg6,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,10,15248,ENSMUSG00000043099,conserved gene and region,11,75167374,75167629,256,*,256,19,0.62890625,0.757160648,0.07421875,2.40E-12,CpGisland,TRUE,U3,Pr-B
17725,cg24391217,0.0000284,0.0000275,1.033782212,0.302043779,gain,ns,0.00000283,0.0000467,0.06049619,0.951799432,pos,ns,0.023364202,0.013694892,1.706052226,0.088999919,pos,ns,1.050610387,-0.000760787,0.000470966,-1.615375677,0.107246618,neg,ns,0.711713998,Lrp4,Lrp4_Exon,2,91485803,91485852,91485851,91485852,50,+,CAGCTTTGACACAGAGGACCTGTCTGATGATGTCATCCCACTGGCTGACG,"Exon (Lrp4-201/Lrp4, exon 17 of 38)",2,91457511,91513779,56269,1,Lrp4-201,28292,Lrp4-201;Lrp4-202,Lrp4;Lrp4,0;9547,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,7,228357,ENSMUSG00000027253,conserved gene and region,2,91485740,91485897,158,*,158,11,0.588607595,0.803885291,0.069620253,0.000000471,CpGisland,TRUE,NA,NRS
15498,cg08956225,-0.0000348,0.00000951,-3.657583921,0.00029906,loss,ns,-0.000000976,0.0000162,-0.060412784,0.951865805,neg,ns,0.015841493,0.004732608,3.347307254,0.00091652,pos,ns,3.03785826,-0.000959825,0.000162754,-5.897397475,9.65E-09,neg,yes,0.841623548,Nyap2,Nyap2_threeUTR,1,81336698,81336747,81336698,81336699,50,+,CGTATTCTAAACAGCAAACGGTATTCTGGGATACTGCCATATGAGTGTGT,3' UTR,1,81077583,81341764,264182,1,Nyap2-203,259115,Nyap2-203,Nyap2,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,2,241134,ENSMUSG00000054976,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2302,cg11885593,-0.00000211,0.00000109,-1.931512091,0.054331077,loss,ns,0.000000112,0.00000185,0.060272039,0.951977808,pos,ns,-0.000127958,0.000543164,-0.235579396,0.813914616,neg,ns,0.089421152,0.00000803,0.0000187,0.429733198,0.667688276,pos,ns,0.975460356,Meis1,Meis1_Intron,11,18990525,18990574,18990573,18990574,50,-,CCACTTAATTCACCATGAAAAGATTTTCCTTGCTGGAAATTCTGATTCCG,"Intron (Meis1-206/Meis1, intron 6 of 9)",11,18879817,19018985,139169,2,Meis1-206,28411,Meis1-206;Meis1-202;Meis1-209;Meis1-201;Meis1-203;Meis1-208;Meis1-207;Meis1-204,Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,88,17268,ENSMUSG00000020160,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15719,cg00422730,-0.00000551,0.00000789,-0.698097049,0.485639808,loss,ns,0.000000807,0.0000134,0.060232276,0.952009451,pos,ns,-0.007028474,0.003925676,-1.790385536,0.074367673,neg,ns,1.128615808,0.00000685,0.000135004,0.050769134,0.959542183,pos,ns,0.753404125,Gm48156,Gm48156_Intergenic_downstream,13,82971908,82971957,82971956,82971957,50,+,CATCAGTGTCAAACTCCTTGCTGGTTTCCACACGCACACGCACAGAAACG,Distal Intergenic,13,83189565,83189709,145,2,Gm48156-201,217752,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,16,,NA,mapped to different genes,13,82971940,82971998,59,*,59,7,0.542372881,1.995169082,0.118644068,0.00000415,CpGisland,TRUE,U15,NS
7210,cg22521808,0.00000219,0.00000799,0.273740404,0.784466423,gain,ns,0.000000817,0.0000136,0.060200483,0.952034752,pos,ns,-0.005284947,0.003975107,-1.329510411,0.184657145,neg,ns,0.733633882,0.000160089,0.000136704,1.171064876,0.242472058,pos,ns,0.825717501,Gria3,Gria3_Exon,X,41654900,41654949,41654900,41654901,50,-,CGGCAGCGGGGGCGGTGACTCCAAGGTCAGCCTCAATGTCACCACAACCG,"Exon (Gria3-202/Gria3, exon 15 of 17)",20,41401128,41676585,275458,1,Gria3-202,253772,Gria3-202;Gria3-201;Gria3-208;Gria3-206;Gria3-209,Gria3;Gria3;Gria3;Gria3;Gria3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,26,53623,ENSMUSG00000001986,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22280,cg15009537,-0.0000116,0.00000358,-3.248270464,0.001288452,loss,ns,-0.000000366,0.00000609,-0.060117378,0.952100886,neg,ns,-0.00322254,0.001782751,-1.807621585,0.071634614,neg,ns,1.144877077,-0.0000336,0.0000613,-0.548855274,0.583499861,neg,ns,0.943519381,Plpp1,Plpp1_Exon,13,112851402,112851451,112851450,112851451,50,-,GCTGGATTGCCTTTTGCAATTCTTACTTCAAGGCATACCCCCTTCCAACG,"Exon (Plpp1-202/Plpp1, exon 2 of 6)",13,112800792,112867894,67103,1,Plpp1-201,50610,Plpp1-201;Plpp1-202,Plpp1;Plpp1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,19012,ENSMUSG00000021759,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26144,cg13684852,-0.0000908,0.00000884,-10.26640667,1.77E-21,loss,yes,0.000000897,0.000015,0.059728484,0.952410371,pos,ns,-0.006259796,0.004401688,-1.422135197,0.155992363,neg,ns,0.806896663,0.000140259,0.000151374,0.926577405,0.354866784,pos,ns,0.792609802,Lmo4,Lmo4_Intron,3,144195271,144195320,144195319,144195320,50,+,ACAATTTAGATTACTTCATCTCTGCTAGCAACAAACTGAATGAAATTTCG,"Intron (Lmo4-203/Lmo4, intron 2 of 4)",3,144188530,144202396,13867,2,Lmo4-203,7076,Lmo4-203;Lmo4-201;Lmo4-202;Lmo4-207;Lmo4-206;Lmo4-208,Lmo4;Lmo4;Lmo4;Lmo4;Lmo4;Lmo4,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,54,16911,ENSMUSG00000028266,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19264,cg16735596,-0.00000474,0.00000138,-3.438801511,0.000664237,loss,ns,-0.00000014,0.00000234,-0.059629419,0.952489208,neg,ns,0.000160945,0.000686176,0.234553362,0.814710254,pos,ns,0.088996818,-0.0000204,0.0000236,-0.862637872,0.389003449,neg,ns,0.054564094,Kmt2d,Kmt2d_fiveUTR,15,98871016,98871065,98871064,98871065,50,-,CTTCACAGGGCGATCCAGAAATCCTCATCCGAGAACATGGCCAGAGCCCG,Promoter (<=1kb),15,98831669,98871183,39515,2,Kmt2d-202,118,Kmt2d-202;Kmt2d-201,Kmt2d;Kmt2d,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,16,381022,ENSMUSG00000048154,conserved gene and region,15,98870996,98871176,181,*,181,14,0.657458564,0.734492754,0.077348066,1.85E-09,CpGisland,TRUE,U1,Pr-A
4184,cg21944491,0.0000397,0.00000933,4.253730858,0.0000279,gain,ns,-0.000000945,0.0000159,-0.059620647,0.95249619,neg,ns,-0.001404493,0.004644773,-0.302381464,0.762564065,neg,ns,0.117723664,0.0000107,0.000159733,0.066830211,0.946759953,pos,ns,0.736039447,Ltbp4,Ltbp4_Exon,7,27322355,27322404,27322403,27322404,50,-,CGGTGTTGGTACAGATGCCGCTCTGGCAAAGGTCCTCCTCGCTGCACTCG,"Exon (Ltbp4-201/Ltbp4, exon 21 of 33)",7,27305136,27337692,32557,2,Ltbp4-201,15288,Ltbp4-201;Ltbp4-204;Ltbp4-202;Ltbp4-203;Ltbp4-209,Ltbp4;Ltbp4;Ltbp4;Ltbp4;Ltbp4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,108075,ENSMUSG00000040488,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8985,cg23146472,0.00000791,0.00000271,2.918422088,0.003775457,gain,ns,0.000000274,0.00000461,0.059545956,0.95255563,pos,ns,0.001984026,0.001349245,1.470470709,0.142448555,pos,ns,0.846341951,-0.000039,0.0000464,-0.841333947,0.400809395,neg,ns,0.026646764,Ttbk1,Ttbk1_Exon,17,46484160,46484209,46484160,46484161,50,+,CGATCCTTGACCACGTAGTTGGCCGGCAGGATGTCGGCCTGCTCCCCTCC,Promoter (<=1kb),17,46480118,46484209,4092,2,Ttbk1-202,0,Ttbk1-201;Ttbk1-203;Ttbk1-202,Ttbk1;Ttbk1;Ttbk1,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,7,106763,ENSMUSG00000015599,conserved gene and region,17,46484135,46484283,149,*,149,10,0.637583893,0.669362085,0.067114094,0.00000263,CpGisland,TRUE,U3,Pr-B
25695,cg11094341,0.00000427,0.0000139,0.306618052,0.759339954,gain,ns,-0.00000141,0.0000236,-0.059462808,0.952621801,neg,ns,0.001733727,0.006923124,0.250425552,0.802424158,pos,ns,0.095596005,-0.00030072,0.000238086,-1.263074905,0.20751143,neg,ns,0.872781217,Lmo3,Lmo3_Exon,6,138425753,138425802,138425753,138425754,50,+,CGACAATGAAATATACAAGTGCACACAAAGTGATCTGGTGAACAAGAGGT,"Exon (A830011K09Rik-201/A830011K09Rik-201, exon 2 of 4)",6,138362918,138581968,219051,2,Lmo3-204,156166,Lmo3-204;Lmo3-207;Lmo3-201;Lmo3-206;Lmo3-202;Lmo3-208;Lmo3-203;Lmo3-205,Lmo3;Lmo3;Lmo3;Lmo3;Lmo3;Lmo3;Lmo3;Lmo3,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,38,109593,ENSMUSG00000030226,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10024,cg08836912,-0.000000215,0.00000852,-0.025289172,0.979840582,loss,ns,0.000000859,0.0000145,0.059376755,0.952690285,pos,ns,-0.007926887,0.004238608,-1.870162584,0.062403522,neg,ns,1.2047909,-0.0000745,0.000145765,-0.51084648,0.60982216,neg,ns,0.713437947,Heatr5a,Heatr5a_Exon,12,51952506,51952555,51952554,51952555,50,-,ACATCCCTACTGACTGAACTGGTTCCTTTCAGCATATCTCCACTGGCTCG,"Exon (Heatr5a-201/Heatr5a, exon 7 of 36)",12,51875871,51971321,95451,2,Heatr5a-201,18766,Heatr5a-201;Heatr5a-204,Heatr5a;Heatr5a,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,320487,ENSMUSG00000035181,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17507,cg11109931,-0.00002,0.00000754,-2.659456849,0.008233421,loss,ns,0.00000076,0.0000128,0.05934806,0.952713122,pos,ns,-0.00573438,0.003751408,-1.528594317,0.127384743,neg,ns,0.894882583,0.000143957,0.000129011,1.115854847,0.265348482,pos,ns,0.484912043,Anks1b,Anks1b_fiveUTR,10,90576991,90577040,90577039,90577040,50,+,CATGATGTGGCAATGCCACCTCTCAGCCCAGGACTACCGCTATTACCCCG,Promoter (<=1kb),10,90576992,90969820,392829,1,Anks1b-201,0,Anks1b-233;Anks1b-222;Anks1b-203;Anks1b-214;Anks1b-215;Anks1b-208;Anks1b-210;Anks1b-221;Anks1b-219;Anks1b-213;Anks1b-216;Anks1b-224;Anks1b-206;Anks1b-207;Anks1b-209;Anks1b-231;Anks1b-218;Anks1b-217;Anks1b-201,Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,9,14,77531,ENSMUSG00000058589,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15239,cg26421270,-0.0000275,0.0000126,-2.181780028,0.029876517,loss,ns,0.00000127,0.0000214,0.059340839,0.952718868,pos,ns,-0.013124552,0.006262801,-2.095636069,0.036925305,neg,ns,1.432675906,0.00000962,0.000215377,0.044651866,0.964413549,pos,ns,0.567221231,Gm18605,Gm18605_Intron,14,79880480,79880529,79880528,79880529,50,+,TCAATAAAATCTCTACTTTCAGCTGGAGTGTCTAATAGTAATTCTTCTCG,"Intron (Gm6999-201/Gm6999-201, intron 1 of 4)",14,79947657,79948279,623,1,Gm18605-201,-67128,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,6,100417424,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8758,cg27115769,0.0000332,0.0000111,3.007947903,0.002845636,gain,ns,0.00000111,0.0000188,0.059332392,0.952725591,pos,ns,0.003835559,0.005500217,0.697346789,0.486108441,pos,ns,0.313266838,0.000179026,0.000189152,0.946467606,0.344647292,pos,ns,0.672273022,Fgf8,Fgf8_Intergenic_downstream,19,45717949,45717998,45717997,45717998,50,+,GTGATTGTAAGAAATTCAGCTAGTCGGTGGCAACCATTGTTCCCCAAGCG,Distal Intergenic,19,45736971,45742684,5714,2,Fgf8-203,24686,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,18,14179,ENSMUSG00000025219,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11140,cg07505322,-0.00000426,0.00000905,-0.471487021,0.637624638,loss,ns,0.000000911,0.0000154,0.059300174,0.952751231,pos,ns,0.003553274,0.004502073,0.789252805,0.430567483,pos,ns,0.365958772,-0.000182604,0.000154826,-1.179413105,0.239138065,neg,ns,0.689023847,Lingo1,Lingo1_Intron,9,56728101,56728150,56728101,56728102,50,-,CGGAGGAGATAACTCGATATAATGAACTCCACGGTCCCTCTTGCTGTTTG,"Intron (Lingo1-206/Lingo1, intron 2 of 6)",9,56618475,56796138,177664,2,Lingo1-206,67988,Lingo1-206;Lingo1-205;Lingo1-207;Lingo1-204;Lingo1-208,Lingo1;Lingo1;Lingo1;Lingo1;Lingo1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,25,235402,ENSMUSG00000049556,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21523,cg16322968,0.000113273,0.0000132,8.610802472,3.73E-16,gain,yes,0.00000133,0.0000223,0.059294368,0.952755852,pos,ns,0.024269333,0.006547242,3.706802617,0.000248559,pos,ns,3.604570785,-0.000612822,0.000225159,-2.721726791,0.006861398,neg,ns,0.412458241,Zfhx3,Zfhx3_Intron,8,108101724,108101773,108101724,108101725,50,+,CGCATTGACAGATTGGGAAAGCAGTTTGTTCTACCAAATTTAACAATGAT,"Intron (Zfhx3-204/Zfhx3, intron 1 of 15)",8,107942644,108961630,1018987,1,Zfhx3-204,159080,Zfhx3-204;Zfhx3-207,Zfhx3;Zfhx3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,114,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21475,cg09580239,-0.0000342,0.00000445,-7.685432835,2.03E-13,loss,yes,-0.000000448,0.00000757,-0.05924758,0.952793087,neg,ns,-0.004403616,0.00221655,-1.986698078,0.04783596,neg,ns,1.320245503,0.0000662,0.0000762,0.868788916,0.385634709,pos,ns,0.956100475,Bcl11b,Bcl11b_Intron,12,107928470,107928519,107928518,107928519,50,-,TTTTACTCTCAATAAGAACTCGAGCTGAGTTTATTCAGAATATTTTAGCG,"Intron (Bcl11b-201/Bcl11b, intron 3 of 3)",12,107910403,108003602,93200,2,Bcl11b-201,75083,Bcl11b-201;Bcl11b-202;Bcl11b-203,Bcl11b;Bcl11b;Bcl11b,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,39,58208,ENSMUSG00000048251,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14556,cg15696611,0.0000787,0.0000123,6.41440301,5.28E-10,gain,yes,-0.00000123,0.0000208,-0.059234946,0.952803142,neg,ns,0.012759134,0.006103534,2.090450024,0.037391701,pos,ns,1.427224779,0.000135101,0.0002099,0.643644331,0.520281968,pos,ns,0.525689101,Tsc22d1,Tsc22d1_Exon,14,76416385,76416434,76416385,76416386,50,-,CGGAACTCAAATGAAAAAGAAAAGTGGCTTCCAGATAACTAGCGTTACTC,"Exon (Tsc22d1-204/Tsc22d1, exon 2 of 5)",14,76414961,76507762,92802,1,Tsc22d1-204,1424,Tsc22d1-204;Tsc22d1-202;Tsc22d1-215;Tsc22d1-213;Tsc22d1-212;Tsc22d1-211;Tsc22d1-216,Tsc22d1;Tsc22d1;Tsc22d1;Tsc22d1;Tsc22d1;Tsc22d1;Tsc22d1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,10,21807,ENSMUSG00000022010,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
1957,cg07066261,-0.0000022,0.00000594,-0.370531636,0.71123946,loss,ns,-0.000000597,0.0000101,-0.059192568,0.952836868,neg,ns,-0.006735981,0.002955824,-2.278884714,0.023353651,neg,ns,1.631645212,0.000264764,0.000101651,2.604646957,0.009640095,pos,ns,0.698414501,Ube2w,Ube2w_threeUTR,1,16581923,16581972,16581971,16581972,50,+,TTACCATGATACCACCATTTTGTTTTCTTTGGATTCTTGTTACATGTTCG,3' UTR,1,16540790,16619312,78523,2,Ube2w-206,37340,Ube2w-206;Ube2w-205;Ube2w-201;Ube2w-203;Ube2w-204,Ube2w;Ube2w;Ube2w;Ube2w;Ube2w,0;0;0;0;37312,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,1,66799,ENSMUSG00000025939,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
668,cg06460049,-0.0000133,0.00000326,-4.071307421,0.0000594,loss,ns,-0.000000328,0.00000554,-0.059163557,0.952859956,neg,ns,-0.00198299,0.001622782,-1.221969463,0.222647531,neg,ns,0.652382117,-0.0000478,0.0000558,-0.85661945,0.392316917,neg,ns,0.938499042,Mmp20,Mmp20_Exon,9,7642778,7642827,7642778,7642779,50,-,CGACAATGCTGAGAAGTGGACTATGGGAACGAATGGTATATATGCACAAT,"Exon (Mmp20-201/Mmp20, exon 4 of 10)",9,7628231,7674979,46749,1,Mmp20-201,14547,Mmp20-201,Mmp20,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,2,30800,ENSMUSG00000018620,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24396,cg21056089,-0.0000191,0.0000072,-2.648011253,0.008510918,loss,ns,-0.000000723,0.0000122,-0.059140792,0.952878074,neg,ns,-0.000247471,0.003581704,-0.069093021,0.944960122,neg,ns,0.024586519,-0.0000845,0.000123175,-0.685778593,0.49336527,neg,ns,0.845648333,Iffo1,Iffo1_threeUTR,6,125160518,125160567,125160566,125160567,50,+,GGTGTTTTTTTCTAGAAAGTCTCCTGCTTTCACTGCGGTCCCGCTTAGCG,3' UTR,6,125145241,125161782,16542,1,Iffo1-202,15277,Gapdh-213;Gapdh-206;Gapdh-202;Gapdh-203;Gapdh-201;Gapdh-212;Gapdh-210;Gapdh-204;Gapdh-208;Gapdh-207;Gapdh-209;Gapdh-211;Gapdh-205;Iffo1-202;Iffo1-204;Iffo1-206;Iffo1-201;Iffo1-205;Iffo1-207;Iffo1-203;Iffo1-209,Gapdh;Gapdh;Gapdh;Gapdh;Gapdh;Gapdh;Gapdh;Gapdh;Gapdh;Gapdh;Gapdh;Gapdh;Gapdh;Iffo1;Iffo1;Iffo1;Iffo1;Iffo1;Iffo1;Iffo1;Iffo1,4436;1960;5900;5206;5900;5009;2772;4349;5023;5036;5036;5036;5038;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,3,320678,ENSMUSG00000038271,conserved gene and region,6,125160553,125160612,60,*,60,10,0.7,1.372997712,0.166666667,2.73E-10,CpGisland,TRUE,NA,NRS
16159,cg02234211,-0.00000292,0.00000182,-1.607942804,0.108865659,loss,ns,-0.000000182,0.00000309,-0.059104185,0.952907207,neg,ns,0.000996034,0.000904285,1.101460192,0.271550886,pos,ns,0.566148775,0.0000111,0.0000311,0.35826494,0.720388891,pos,ns,0.962385046,Zfp407,Zfp407_Intron,18,84542394,84542443,84542442,84542443,50,+,CTTAAACATGAGTTACAACCTTCACGCAGGCATCTACAGGCAAATTATCG,"Intron (Zfp407-201/Zfp407, intron 2 of 2)",18,84128027,84558425,430399,2,Zfp407-201,15982,Zfp407-201;Zfp407-202;Zfp407-204,Zfp407;Zfp407;Zfp407,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,31,32,240476,ENSMUSG00000048410,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8933,cg23188031,-0.00000159,0.00000185,-0.859439426,0.390762231,loss,ns,0.000000185,0.00000314,0.059102423,0.952908609,pos,ns,0.001623592,0.000919095,1.766511136,0.078294211,pos,ns,1.106270346,-0.0000378,0.0000316,-1.194365903,0.233247926,neg,ns,0.954587748,Cuedc2,Cuedc2_Exon,19,46330699,46330748,46330747,46330748,50,+,GGTACTTTCTGGCTGGCTTGAGGTTGATGTATGTGGCCTTCATCTCCTCG,"Exon (Cuedc2-203/Cuedc2, exon 9 of 9)",19,46329812,46338620,8809,2,Cuedc2-203,7872,Cuedc2-203;Cuedc2-201;Cuedc2-202;Cuedc2-204;Cuedc2-205;Cuedc2-206;Cuedc2-211;Cuedc2-213;Cuedc2-208;Cuedc2-214;Cuedc2-212;Cuedc2-210;Cuedc2-207;Cuedc2-209;Fbxl15-201;Fbxl15-202;Psd-201;Psd-202;Psd-207;Psd-213;Psd-203;Psd-204;Psd-206;Psd-209,Cuedc2;Cuedc2;Cuedc2;Cuedc2;Cuedc2;Cuedc2;Cuedc2;Cuedc2;Cuedc2;Cuedc2;Cuedc2;Cuedc2;Cuedc2;Cuedc2;Fbxl15;Fbxl15;Psd;Psd;Psd;Psd;Psd;Psd;Psd;Psd,0;0;0;0;0;0;0;1308;7878;2031;2093;7879;7954;7882;2515;2512;0;0;0;-4193;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,67116,ENSMUSG00000036748,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22360,cg13226074,-0.0000139,0.00000309,-4.520773848,0.00000878,loss,ns,-0.00000031,0.00000524,-0.059077635,0.952928337,neg,ns,-0.00112353,0.001535521,-0.731693194,0.464908605,neg,ns,0.332632415,0.0000141,0.0000528,0.266424099,0.79008973,pos,ns,0.931076776,Fmn1,Fmn1_Intron,2,113605912,113605961,113605912,113605913,50,-,CGTAGCTGCTGGCAAAATCCCAGAAAATGTCTAAAGCTAAACCAGATGTG,"Intron (Fmn1-202/Fmn1, intron 14 of 18)",2,113327736,113716767,389032,1,Fmn1-202,278176,Fmn1-202;Fmn1-203;Fmn1-210;Fmn1-211;Fmn1-201,Fmn1;Fmn1;Fmn1;Fmn1;Fmn1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,4,14260,ENSMUSG00000044042,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22777,cg17541339,-0.00000206,0.00000248,-0.830664038,0.406802733,loss,ns,0.000000248,0.00000421,0.059052249,0.95294854,pos,ns,-0.001635563,0.001231947,-1.327624296,0.185279056,neg,ns,0.732173672,0.0000199,0.0000424,0.469724144,0.638882353,pos,ns,0.938859774,Cit,Cit_Exon,5,115938682,115938731,115938682,115938683,50,+,CGCCGCCATTCTCTGGAGAACAAGGTAAAGAGACTAGAGACCATGGAGCG,"Exon (Cit-201/Cit, exon 17 of 47)",5,115845644,116006353,160710,1,Cit-212,93038,Cit-212;Cit-201;Cit-202;Cit-203;Cit-213;Cit-216;Cit-211,Cit;Cit;Cit;Cit;Cit;Cit;Cit,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,9,12704,ENSMUSG00000029516,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3660,cg08564522,0.0000621,0.0000154,4.04010042,0.0000674,gain,ns,0.00000153,0.0000261,0.058725552,0.953208544,pos,ns,0.016566638,0.007644186,2.167220598,0.03097918,pos,ns,1.508930084,-0.00037624,0.000262883,-1.431206508,0.153378362,neg,ns,0.519108816,Erfl,Erfl_Promoter,7,24951322,24951371,24951322,24951323,50,-,CGCACTTAATCCGCCTGATTGAATGTTTTGCTTTCGCCCAAATTGAAACA,Promoter (6-7kb),7,24927445,24944494,17050,2,Erfl-201,-6877,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,29,36,,NA,mapped to different genes,7,24951274,24951467,194,*,194,18,0.567010309,1.164,0.092783505,1.92E-13,CpGisland,TRUE,U13,Hc-P
14674,cg21621248,0.0000466,0.0000478,0.975718872,0.329964569,gain,ns,-0.00000475,0.0000811,-0.058578695,0.953325422,neg,ns,-0.024065768,0.023768777,-1.012495024,0.312091024,neg,ns,0.505718722,0.000226769,0.000817406,0.277424939,0.781638747,pos,ns,0.196307995,Ctnna2,Ctnna2_Intron,6,77242638,77242687,77242686,77242687,50,-,CGTGAGCAGCTTACGACACTCAGTGAGCAGTAGGTGCCTGTGCAAGCTCG,"Intron (Ctnna2-204/Ctnna2, intron 8 of 19)",6,76881637,77979699,1098063,2,Ctnna2-204,737012,Ctnna2-204;Ctnna2-205;Ctnna2-202;Ctnna2-201;Lrrtm1-201;Lrrtm1-202;Lrrtm1-203;Lrrtm1-204,Ctnna2;Ctnna2;Ctnna2;Ctnna2;Lrrtm1;Lrrtm1;Lrrtm1;Lrrtm1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,24,12386,ENSMUSG00000063063,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
15590,cg07142461,0.0000605,0.0000091,6.644986282,1.36E-10,gain,yes,-0.000000904,0.0000155,-0.058494675,0.953392292,neg,ns,0.009405078,0.004528683,2.076780183,0.038645276,pos,ns,1.412903583,-0.000292669,0.000155741,-1.879202933,0.061154775,neg,ns,0.127332069,Asic2,Asic2_Promoter,11,81968498,81968547,81968546,81968547,50,-,AGTCCTCCCCCCTACACACGCCACTAGAGACAAGATTAAAAGCGAGAGCG,Promoter (<=1kb),11,80880169,81968457,1088289,2,Asic2-202,-90,Asic2-202,Asic2,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,10,11418,ENSMUSG00000020704,conserved gene but different region,11,81968478,81968941,464,*,464,31,0.586206897,0.777849881,0.066810345,2.00E-18,CpGisland,TRUE,U13,Hc-P
3368,cg24860713,0.000135514,0.0000197,6.878303516,3.35E-11,gain,yes,-0.00000195,0.0000335,-0.058328493,0.953524552,neg,ns,0.014773992,0.009805703,1.506673483,0.132912684,pos,ns,0.876433572,0.00000328,0.000337217,0.009719059,0.992251687,pos,ns,0.246949529,Apba1,Apba1_Exon,19,23893249,23893298,23893249,23893250,50,+,CGCGCTGCCCAACCACCTGCACTTCCACTCGCTGGAGCACGAGGAAGCCA,"Exon (Apba1-201/Apba1, exon 2 of 13)",19,23758887,23949596,190710,1,Apba1-201,134362,Apba1-201,Apba1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,319924,ENSMUSG00000024897,conserved gene and region,19,23892739,23893861,1123,*,1123,151,0.715939448,1.050410382,0.134461265,4.45E-136,CpGisland,TRUE,NA,NRS
390,cg13828336,-0.0000374,0.0000076,-4.926583529,0.00000136,loss,yes,-0.000000753,0.0000129,-0.058296259,0.953550207,neg,ns,-0.005276173,0.003783,-1.394706165,0.16410304,neg,ns,0.784883374,0.0000285,0.000130097,0.218986347,0.826804789,pos,ns,0.910811621,Zfhx4,Zfhx4_Intron,3,5351301,5351350,5351301,5351302,50,-,CGAAATGGTACTCTTCAGGAAGCAGGAAAAAGTATGAAAGCGTAATAGGC,"Intron (Zfhx4-203/Zfhx4, intron 4 of 10)",3,5218526,5413165,194640,1,Zfhx4-203,132775,Zfhx4-203;Zfhx4-201;Zfhx4-205,Zfhx4;Zfhx4;Zfhx4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,27,77,80892,ENSMUSG00000025255,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6960,cg02793450,-0.0000129,0.00000554,-2.329127603,0.020494652,loss,ns,-0.000000548,0.00000941,-0.05825456,0.953583394,neg,ns,-0.002420003,0.00275603,-0.878075547,0.380582756,neg,ns,0.419550893,0.0000107,0.0000948,0.113363728,0.909815574,pos,ns,0.87120008,Zfp202,Zfp202_Exon,9,40207641,40207690,40207689,40207690,50,-,GCAGTGACGCTGGTGGAGGGTTTGCAGAAACAACCCAGGAGACCAAGGCG,"Exon (Zfp202-202/Zfp202, exon 2 of 7)",9,40192316,40213604,21289,1,Zfp202-202,15325,Zfp202-202;Zfp202-201;Zfp202-203,Zfp202;Zfp202;Zfp202,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,80902,ENSMUSG00000025602,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8339,cg13764029,0.00000563,0.00000313,1.799061689,0.072981409,gain,ns,0.000000309,0.00000531,0.058139141,0.953675255,pos,ns,0.0000299,0.001556978,0.019217837,0.984679691,pos,ns,0.006705019,-0.0000251,0.0000535,-0.469633494,0.638947055,neg,ns,0.930093447,Lzts2,Lzts2_Exon,19,45026303,45026352,45026351,45026352,50,+,GTGATCCGCTACCAGAAGCAGCTGCAGCACAACTACATCCAGATGTACCG,"Exon (Lzts2-201/Lzts2, exon 5 of 5)",19,45014865,45027030,12166,1,Lzts2-201,11438,Lzts2-207;Lzts2-205;Lzts2-201;Lzts2-203;Lzts2-204;Lzts2-208;Lzts2-206;Lzts2-202;Pdzd7-201;Pdzd7-203;Pdzd7-202;Pdzd7-204;Pdzd7-205;Pdzd7-206;Pdzd7-207;Pdzd7-208,Lzts2;Lzts2;Lzts2;Lzts2;Lzts2;Lzts2;Lzts2;Lzts2;Pdzd7;Pdzd7;Pdzd7;Pdzd7;Pdzd7;Pdzd7;Pdzd7;Pdzd7,11889;0;0;0;0;9806;0;0;3663;19365;19291;19291;19291;19291;19291;19291,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,226154,ENSMUSG00000035342,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13844,cg11522513,-0.00000304,0.00000703,-0.432450502,0.665714694,loss,ns,0.000000694,0.0000119,0.058094136,0.953711074,pos,ns,0.003949657,0.003497572,1.129256721,0.259662625,pos,ns,0.585590556,-0.0001062,0.000120281,-0.882929172,0.377958702,neg,ns,0.889340295,Fryl,Fryl_Exon,5,73093132,73093181,73093180,73093181,50,+,ATGACACCAGCATCTGCCAGCAGTTCAAATATTCGTACCAGTTGTACTCG,"Exon (Fryl-202/Fryl, exon 27 of 63)",5,73020322,73256619,236298,2,Fryl-202,163438,Fryl-202;Fryl-201;Fryl-217;Fryl-215,Fryl;Fryl;Fryl;Fryl,0;0;0;5198,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,7,72313,ENSMUSG00000070733,conserved gene and region,5,73093119,73093205,87,*,87,8,0.551724138,1.288888889,0.091954023,0.00000415,CpGisland,TRUE,U10,Tr-S
15054,cg04463703,-0.00000577,0.00000339,-1.701732251,0.089808175,loss,ns,0.000000334,0.00000576,0.058074804,0.95372646,pos,ns,0.000646659,0.001686971,0.383325537,0.701741144,pos,ns,0.15382306,-0.0000714,0.000058,-1.231000945,0.219255645,neg,ns,0.945259027,Slc14a2,Slc14a2_Intergenic_upstream,18,78671413,78671462,78671461,78671462,50,-,CAACAACATCAATGTGCTGTCACTATCCAATTCCACCAAATTAGTGTCCG,Distal Intergenic,18,78146148,78596942,450795,2,Slc14a2-206,-74520,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,12,27411,ENSMUSG00000024552,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
142,cg15842967,-0.00000629,0.00000221,-2.846703355,0.004712102,loss,ns,-0.000000218,0.00000375,-0.058053876,0.953743116,neg,ns,-0.000928395,0.001099834,-0.844122509,0.399251875,neg,ns,0.398753036,-0.0000549,0.0000378,-1.451889643,0.147543585,neg,ns,0.03774647,Kdm2a,Kdm2a_fiveUTR,19,4333893,4333942,4333893,4333894,50,-,CGGCTTCCTGTGCCTGCGAACAATGCTGCTGCGTCACCCACATGCAGCTC,Promoter (<=1kb),19,4329191,4333919,4729,2,Kdm2a-210,0,Kdm2a-201;Kdm2a-202;Kdm2a-212;Kdm2a-210,Kdm2a;Kdm2a;Kdm2a;Kdm2a,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,30,225876,ENSMUSG00000054611,conserved gene and region,19,4333891,4334071,181,*,181,11,0.651933702,0.572620075,0.060773481,0.00000179,CpGisland,TRUE,NA,NRS
23871,cg06930747,-0.0000572,0.00000819,-6.984073276,1.75E-11,loss,yes,0.000000807,0.0000139,0.058019025,0.953770855,pos,ns,-0.010353085,0.004074338,-2.541047399,0.011539295,neg,ns,1.937820727,0.0000404,0.000140116,0.288068111,0.773487101,pos,ns,0.857014539,Mosmo,Mosmo_threeUTR,7,120726263,120726312,120726311,120726312,50,-,GGTTTGCTGGTGGCTTCCCACTGGCGAAGAGAAGCTACAAAATATGCTCG,3' UTR,7,120677618,120730638,53021,1,Mosmo-202,48645,Mosmo-202;Mosmo-205;Mosmo-201;Mosmo-207;Mosmo-204;Mosmo-203;Mosmo-208;Mosmo-206,Mosmo;Mosmo;Mosmo;Mosmo;Mosmo;Mosmo;Mosmo;Mosmo,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,6,233812,ENSMUSG00000046096,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20031,cg23083092,-0.0000032,0.00000387,-0.827624089,0.408520072,loss,ns,0.000000381,0.00000658,0.057890516,0.953873135,pos,ns,-0.002293538,0.001926459,-1.19054574,0.234742823,neg,ns,0.629407677,-0.0000476,0.0000663,-0.718581416,0.472940119,neg,ns,0.809075846,Rarg,Rarg_Exon,15,102252415,102252464,102252463,102252464,50,-,TCACACAGAGAGGCCATCTCCTTGGGGAGGTCAGGCTGGCCCAGGCCCCG,"Exon (Rarg-201/Rarg, exon 3 of 10)",15,102234938,102257517,22580,2,Rarg-201,5053,Rarg-201;Rarg-205;Rarg-206;Rarg-207,Rarg;Rarg;Rarg;Rarg,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,3,19411,ENSMUSG00000001288,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
27674,cg02592763,-0.00000317,0.00000144,-2.196557547,0.028792172,loss,ns,0.000000142,0.00000245,0.05774974,0.953985179,pos,ns,0.001042559,0.000719184,1.44964145,0.148169426,pos,ns,0.829241402,-0.0000463,0.0000247,-1.8737887,0.061900123,neg,ns,0.972012108,Sdccag8,Sdccag8_Intron,1,176986002,176986051,176986002,176986003,50,+,CGATGCACACATTTTGTTTTACTGCTGTAAAGAGAGCTGTCAAAATACAA,"Intron (Sdccag8-201/Sdccag8, intron 16 of 17)",1,176814660,177020437,205778,1,Sdccag8-201,171342,Sdccag8-201;Sdccag8-203,Sdccag8;Sdccag8,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,20,76816,ENSMUSG00000026504,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19966,cg21640725,0.0000253,0.000005,5.049937929,0.000000756,gain,yes,-0.00000049,0.0000085,-0.057703816,0.95402173,neg,ns,0.011327648,0.002488898,4.551271284,0.00000767,pos,ns,5.11539196,-0.000350289,0.0000856,-4.092502352,0.0000545,neg,ns,0.098221967,Etv4,Etv4_Intergenic_upstream,11,101809531,101809580,101809531,101809532,50,-,CGTCAATGGGAAAAATCTATTAAAGAGAGTGAGATATCAGGAGACCTCTG,Distal Intergenic,11,101769747,101785371,15625,2,Etv4-201,-24209,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,5,18612,ENSMUSG00000017724,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3169,cg12882185,-0.000000983,0.00000187,-0.525645941,0.59951002,loss,ns,-0.000000183,0.00000318,-0.057601917,0.954102833,neg,ns,0.000213482,0.000931106,0.229277426,0.818804491,pos,ns,0.086819784,0.0000115,0.000032,0.359850133,0.719204235,pos,ns,0.944739257,Gm46443,Gm46443_Intergenic_upstream,14,23095047,23095096,23095095,23095096,50,-,CTAAGAAAGATGGACTAACTGCCAGGGCCACTGACAGGCAGTCGATAGCG,Distal Intergenic,14,23321144,23321507,364,1,Gm46443-201,-226097,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,12,12,108168141,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16596,cg04759874,0.00000609,0.00000242,2.511411687,0.012533182,gain,ns,0.000000237,0.00000412,0.057558905,0.954137067,pos,ns,0.00309606,0.001206293,2.566590412,0.010739711,pos,ns,1.969007388,0.0000104,0.0000415,0.250280355,0.802536333,pos,ns,0.051527681,Six3,Six3_Intron,17,85620686,85620735,85620734,85620735,50,-,TGGCAGGGCTGACAGTGATTGGCAGTGGTTGCCGTGGCAACGCCACAACG,"Intron (Six3-202/Six3, intron 1 of 2)",17,85613608,85625222,11615,1,Six3-202,7078,Six3-202;Six3-203;Six3-201,Six3;Six3;Six3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,24,20473,ENSMUSG00000038805,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8385,cg00029755,-0.00000644,0.00000419,-1.53793183,0.125085325,loss,ns,0.000000409,0.00000711,0.057439001,0.954232501,pos,ns,-0.000804499,0.002083841,-0.386065125,0.699713259,neg,ns,0.155079896,0.0000865,0.0000717,1.206746786,0.228449721,pos,ns,0.89555949,Zeb2,Zeb2_Intron,2,45083123,45083172,45083123,45083124,50,-,CGGATGTTGGAACGGTGTAATTATGTTCTAGTAGGGTAGCCATCCGTTTC,"Intron (Zeb2-212/Zeb2, intron 3 of 10)",2,44983632,45117395,133764,2,Zeb2-212,34223,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8847,cg09103418,0.00000819,0.00000517,1.584711535,0.114051443,gain,ns,0.000000504,0.00000878,0.057398204,0.954264972,pos,ns,0.0000769,0.002572159,0.029889118,0.976174718,pos,ns,0.010472445,0.000304259,0.0000885,3.439653874,0.000662226,pos,ns,0.881211196,Ldb1,Ldb1_Exon,19,46033176,46033225,46033224,46033225,50,-,TCCAGGGGCTGTTGGCGCCCAGTGCAGGGGAGTTGTTAAAGCTGTCCTCG,"Exon (Ldb1-207/Ldb1, exon 11 of 11)",19,46031570,46045210,13641,2,Ldb1-207,11985,Ldb1-207;Ldb1-206;Ldb1-202;Ldb1-208;Ldb1-201;Ldb1-205;Ldb1-203;Ldb1-204,Ldb1;Ldb1;Ldb1;Ldb1;Ldb1;Ldb1;Ldb1;Ldb1,0;0;0;0;0;0;1653;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,9,16825,ENSMUSG00000025223,conserved gene and region,19,46033191,46033306,116,*,116,12,0.637931035,1.01978022,0.103448276,1.21E-09,CpGisland,TRUE,U10,Tr-S
6361,cg11322904,-0.0000031,0.00000515,-0.601919376,0.54766777,loss,ns,0.000000502,0.00000876,0.05737011,0.954287333,pos,ns,0.000343088,0.002564972,0.133758767,0.893680125,pos,ns,0.0488179,0.0000113,0.0000882,0.128415362,0.897903543,pos,ns,0.768914468,Dgki,Dgki_Exon,6,36994852,36994901,36994900,36994901,50,+,TACTCACATGGTGAAGGAGCCGGGGGGAGCAGACACTCGCCGCAGGTCCG,"Exon (Dgki-203/Dgki, exon 21 of 34)",6,36846022,37299974,453953,2,Dgki-203,305073,Dgki-203;Dgki-202;Dgki-205;Dgki-208;Dgki-201;Dgki-206,Dgki;Dgki;Dgki;Dgki;Dgki;Dgki,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,7,320127,ENSMUSG00000038665,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23387,cg23401809,0.0000708,0.00000961,7.361665962,1.65E-12,gain,yes,0.000000935,0.0000163,0.057271448,0.954365861,pos,ns,0.012658546,0.004784518,2.645730312,0.008567213,pos,ns,2.06716042,-0.0000152,0.000164539,-0.092494596,0.926364829,neg,ns,0.268889028,Sox21,Sox21_Intergenic_downstream,14,118230346,118230395,118230394,118230395,50,+,TTCTAATGCTAATCTAGCGTGTTAAATATCTTTTTGTTCCCCTTTCACCG,Downstream (2-3kb),14,118233232,118237030,3799,2,Sox21-201,6635,Sox21-201,Sox21,6635,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,26,27,223227,ENSMUSG00000061517,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
9587,cg24961380,-0.00000582,0.00000577,-1.008315154,0.314089565,loss,ns,-0.000000558,0.0000098,-0.05694417,0.954626354,neg,ns,0.000816307,0.002872156,0.284214062,0.776436086,pos,ns,0.109894288,-0.000199201,0.0000988,-2.016747919,0.044583735,neg,ns,0.801998002,Ankk1,Ankk1_Exon,9,49416406,49416455,49416406,49416407,50,-,CGGGAGACCAGAAGCCGTGCCACATTCTCAAAGTTATTCTGTGCAGCCAG,"Exon (Ankk1-201/Ankk1, exon 8 of 8)",9,49415194,49427021,11828,2,Ankk1-201,10566,Ankk1-201;Ankk1-202,Ankk1;Ankk1,0;2981,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,244859,ENSMUSG00000032257,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22346,cg23442072,-0.00000201,0.00000295,-0.681582134,0.496012082,loss,ns,0.000000285,0.00000502,0.056860343,0.954693076,pos,ns,-0.000183686,0.001469655,-0.1249855,0.90061604,neg,ns,0.045460323,-0.0000201,0.0000505,-0.396730653,0.691839065,neg,ns,0.918354797,Brpf1,Brpf1_Exon,6,113321799,113321848,113321847,113321848,50,-,GAGGATACCTCAGGCACTGAGAATGAGGCCTACTCCGTGGGCACTGGCCG,"Exon (Brpf1-204/Brpf1, exon 11 of 14)",6,113307137,113324857,17721,1,Brpf1-204,14662,Brpf1-204;Brpf1-209;Brpf1-203;Brpf1-202;Brpf1-201;Brpf1-210;Brpf1-208;Brpf1-205;Brpf1-207;Brpf1-206,Brpf1;Brpf1;Brpf1;Brpf1;Brpf1;Brpf1;Brpf1;Brpf1;Brpf1;Brpf1,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,16,78783,ENSMUSG00000001632,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14575,cg27224928,0.000033,0.0000079,4.176800093,0.0000385,gain,ns,-0.000000761,0.0000134,-0.056747781,0.95478267,neg,ns,0.00188364,0.003931005,0.479175148,0.63215187,pos,ns,0.199178573,-0.00002,0.000135187,-0.147679305,0.88269187,neg,ns,0.048033264,Serp2,Serp2_Exon,14,76556450,76556499,76556498,76556499,50,-,CCCCTCTGGGTGATGTTTTTGCTGTGCTTCTCGTTAGCCATCCGGATCCG,Promoter (<=1kb),14,76539570,76556492,16923,2,Serp2-203,0,Serp2-201;Serp2-204;Serp2-202;Serp2-203;Serp2-205,Serp2;Serp2;Serp2;Serp2;Serp2,0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,72661,ENSMUSG00000052584,conserved gene and region,14,76556253,76556942,690,*,690,76,0.727536232,0.83460657,0.110144928,2.95E-61,CpGisland,TRUE,U3,Pr-B
11315,cg01784688,0.0000229,0.0000105,2.188278956,0.029395367,gain,ns,-0.000001,0.0000178,-0.05652205,0.954962343,neg,ns,0.005309809,0.005209097,1.019333815,0.308839358,pos,ns,0.510267359,0.000162261,0.00017914,0.905777773,0.365756939,pos,ns,0.613365294,Foxa1,Foxa1_Intergenic_downstream,12,57536117,57536166,57536165,57536166,50,-,GTTATCCGCCCCATTAATATATTAGCCAGGCATGACACAAAGGAAGCGCG,Distal Intergenic,12,57540628,57546121,5494,2,Foxa1-201,10004,Foxa1-201,Foxa1,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,7,15375,ENSMUSG00000035451,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
20541,cg22712872,-0.0000014,0.00000596,-0.23450617,0.814746853,loss,ns,-0.000000572,0.0000101,-0.056493506,0.954985063,neg,ns,-0.008248492,0.002964352,-2.78256188,0.005723876,neg,ns,2.242309781,0.0000798,0.000101944,0.782485802,0.434526423,pos,ns,0.810323587,Zfp385a,Zfp385a_threeUTR,15,103314472,103314521,103314520,103314521,50,+,GAGGTTGCAGGCGGTAAAACCAAAGTGCTTATGAGGGACCCAGGATCCCG,3' UTR,15,103313895,103334327,20433,2,Zfp385a-202,19806,Gpr84-201;Zfp385a-202;Zfp385a-201;Zfp385a-203,Gpr84;Zfp385a;Zfp385a;Zfp385a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,3,29813,ENSMUSG00000000552,mapped to different genes,15,103314420,103314666,247,*,247,16,0.639676113,0.63979278,0.064777328,1.37E-09,CpGisland,TRUE,NA,NRS
20894,cg05399218,0.0000239,0.0000112,2.126051753,0.034288986,gain,ns,0.00000108,0.0000191,0.056429174,0.955036269,pos,ns,-0.014842416,0.005595511,-2.652557914,0.008399694,neg,ns,2.075736519,0.000669238,0.000192429,3.477839612,0.000577758,pos,ns,0.265418651,Pax6,Pax6_Exon,2,105684744,105684793,105684792,105684793,50,-,GTTATAGACCCATGCAGATGCAAAAGTCCAAGTGCTGGACAATCAAAACG,"Exon (Pax6-206/Pax6, exon 5 of 13)",2,105668900,105697364,28465,1,Pax6-206,15844,Pax6-206;Pax6-207;Pax6-210;Pax6-214;Pax6-208;Pax6-202;Pax6-205;Pax6-225;Pax6-204;Pax6-201;Pax6-203;Pax6-224;Pax6-219;Pax6-221;Pax6-213;Pax6-211;Pax6-222;Pax6-212;Pax6-215;Pax6-223;Pax6-209;Pax6-216,Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6;Pax6,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,31,78,18508,ENSMUSG00000027168,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
3406,cg04688368,0.000117476,0.0000113,10.35958083,8.61E-22,gain,yes,-0.00000109,0.0000193,-0.056334197,0.955111868,neg,ns,0.01064861,0.005643944,1.886732202,0.060130692,pos,ns,1.220903798,-0.000081,0.000194095,-0.417321184,0.676732361,neg,ns,0.190375725,Kcnma1,Kcnma1_Exon,14,24004020,24004069,24004068,24004069,50,-,TGAGATGGTTCGCGTGGATATTGCTACTCATTCTAAGACTGCTGCCTCCG,Promoter (<=1kb),14,23292291,24004859,712569,2,Kcnma1-205,790,Kcnma1-205;Kcnma1-212;Kcnma1-211;Kcnma1-229;Kcnma1-234;Kcnma1-223;Kcnma1-214;Kcnma1-216;Kcnma1-219;Kcnma1-220;Kcnma1-224;Kcnma1-233;Kcnma1-236;Kcnma1-237;Kcnma1-213;Kcnma1-228;Kcnma1-221;Kcnma1-225;Kcnma1-226;Kcnma1-230;Kcnma1-235;Kcnma1-238;Kcnma1-215,Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1;Kcnma1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,16,41,16531,ENSMUSG00000063142,conserved gene and region,14,24004009,24005040,1032,*,1032,138,0.754844961,0.943439723,0.13372093,5.00E-124,CpGisland,TRUE,U3,Pr-B
21265,cg13705955,-0.00000394,0.00000212,-1.859410486,0.063916232,loss,ns,0.000000202,0.0000036,0.056260043,0.955170892,pos,ns,-0.001688144,0.001053545,-1.602346065,0.110097525,neg,ns,0.958222445,0.0000392,0.0000362,1.082848373,0.279717266,pos,ns,0.953979545,Ssbp3,Ssbp3_Intron,4,107027164,107027213,107027164,107027165,50,-,CGCTTCTCCATGTGCTGTGATCTATAACCTGCCTCTACTGTCTGGCCTCA,"Intron (Ssbp3-216/Ssbp3, intron 5 of 8)",4,106910701,107031069,120369,1,Ssbp3-216,116463,Ssbp3-216;Ssbp3-201;Ssbp3-215;Ssbp3-202;Ssbp3-203;Ssbp3-213;Ssbp3-214;Ssbp3-211;Ssbp3-212;Ssbp3-204;Ssbp3-206;Ssbp3-210;Ssbp3-205,Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3,0;0;0;0;0;0;0;0;0;0;0;0;-3619,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,18,72475,ENSMUSG00000061887,conserved gene and region,4,107027026,107027165,140,*,140,12,0.607142857,1.052631579,0.085714286,1.13E-08,CpGisland,TRUE,U11,Tr-P
23000,cg07045998,0.000000162,0.00000171,0.094848275,0.92449662,gain,ns,0.000000163,0.0000029,0.056103312,0.955295647,pos,ns,0.00000936,0.000849449,0.011020264,0.991214368,pos,ns,0.003832411,-0.0000182,0.0000292,-0.621841395,0.534503213,neg,ns,0.969729515,Rbms3,Rbms3_Exon,9,116681192,116681241,116681192,116681193,50,-,CGGTTGGTTGCAATACTGTACGGTGAAGAATAAAATCTGCAAACAGAAAA,"Exon (Rbms3-206/Rbms3, exon 9 of 15)",9,116572746,117252463,679718,2,Rbms3-206,571222,Rbms3-206;Rbms3-202;Rbms3-210;Rbms3-212;Rbms3-207;Rbms3-214;Rbms3-205;Rbms3-201;Rbms3-208;Rbms3-203,Rbms3;Rbms3;Rbms3;Rbms3;Rbms3;Rbms3;Rbms3;Rbms3;Rbms3;Rbms3,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,207181,ENSMUSG00000039607,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7442,cg15301611,0.000145232,0.0000127,11.4678883,1.29E-25,gain,yes,0.00000121,0.0000215,0.056065065,0.955326091,pos,ns,0.005153503,0.006303137,0.817609183,0.414208334,pos,ns,0.382781167,0.000374537,0.000216764,1.727854194,0.085010249,pos,ns,0.6279039,Ostm1,Ostm1_Intron,10,42636444,42636493,42636444,42636445,50,-,CGGCGTGATTGAAGGGTTTTTAACAATTAACATAATCAGAAAATGAGCTG,"Intron (Ostm1-202/Ostm1, intron 2 of 5)",10,42583835,42698323,114489,1,Ostm1-202,52609,Ostm1-202;Ostm1-203,Ostm1;Ostm1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,21,22,14628,ENSMUSG00000038280,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23987,cg04830409,-0.00000129,0.00000166,-0.773996592,0.439522669,loss,ns,-0.000000158,0.00000282,-0.056003192,0.955375342,neg,ns,-0.0000613,0.000827256,-0.074148651,0.940939927,neg,ns,0.026438103,0.0000106,0.0000284,0.371771911,0.710316665,pos,ns,0.07203171,BC048403,BC048403_fiveUTR,10,121740017,121740066,121740065,121740066,50,+,ACAGGCGGTGCTGGAGACGTTCTTCTCTCACCTGGGTATCTTCTCTTACG,Promoter (<=1kb),10,121739937,121752865,12929,1,BC048403-201,80,BC048403-201;BC048403-202,BC048403;BC048403,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,5,270802,ENSMUSG00000053684,conserved gene but different region,10,121739820,121740164,345,*,345,42,0.713043478,0.957826547,0.12173913,3.95E-36,CpGisland,TRUE,U1,Pr-A
9337,cg11286097,-0.0000119,0.00000836,-1.41740316,0.157369365,loss,ns,-0.000000792,0.0000142,-0.055722675,0.955598632,neg,ns,-0.003415547,0.004163172,-0.820419472,0.412607414,neg,ns,0.384462973,0.00000846,0.000143171,0.059083007,0.952924061,pos,ns,0.636094225,Tenm3,Tenm3_Exon,8,48228923,48228972,48228971,48228972,50,+,GATGGTGAAGTGCAGGTTCTCCAGGTAGAAGGCGTTGTTGAGCACGGCCG,"Exon (Tenm3-201/Tenm3, exon 29 of 29)",8,48227682,48674690,447009,2,Tenm3-201,445718,Tenm3-201;Tenm3-206,Tenm3;Tenm3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,39,23965,ENSMUSG00000031561,conserved gene and region,8,48228922,48229133,212,*,212,21,0.632075472,0.99197861,0.099056604,3.13E-16,CpGisland,TRUE,U10,Tr-S
23745,cg18958337,0.0000229,0.0000129,1.783890008,0.075419611,gain,ns,0.00000122,0.0000219,0.055698891,0.955617564,pos,ns,0.006711487,0.006401366,1.04844597,0.295249895,pos,ns,0.529810248,-0.000132192,0.000220142,-0.60048367,0.548622679,neg,ns,0.338777368,Foxo6,Foxo6_threeUTR,4,120267074,120267123,120267074,120267075,50,-,CGGGAAATATTTAAAACAATTTTATTCATGAAAATATGCTGTACAATGCA,3' UTR,4,120267079,120287349,20271,2,Foxo6-201,20226,Foxo6-201,Foxo6,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,42,329934,ENSMUSG00000052135,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
17336,cg16711881,-0.00000229,0.000000971,-2.355424526,0.019124295,loss,ns,-9.18E-08,0.00000165,-0.055676262,0.955635576,neg,ns,-0.000452526,0.000483235,-0.936450506,0.349770228,neg,ns,0.45621716,0.00000455,0.0000166,0.274052138,0.784227073,pos,ns,0.969445791,Agap1,Agap1_Intron,1,89751257,89751306,89751305,89751306,50,-,GTTGTGTGGCCCGCAGAGGCTGTTTATCAAAACTGCTCACACTGCAGACG,"Intron (Agap1-201/Agap1, intron 11 of 17)",1,89454806,89897617,442812,1,Agap1-201,296451,Agap1-201;Agap1-204;Agap1-202,Agap1;Agap1;Agap1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,29,347722,ENSMUSG00000055013,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8577,cg11422102,0.000000573,0.000000974,0.588256437,0.556788498,gain,ns,-9.21E-08,0.00000165,-0.055647126,0.955658769,neg,ns,-0.000750717,0.000484623,-1.549074908,0.122383972,neg,ns,0.912275455,0.0000337,0.0000167,2.023916585,0.043836192,pos,ns,0.985839977,Snrnp70,Snrnp70_Exon,7,45381808,45381857,45381856,45381857,50,-,AAAAAGGTGCCATTTACCGATGCCGGCCTTGCGGGTGTCCAAACCGAGCG,"Exon (Snrnp70-216/Snrnp70, exon 8 of 10)",7,45376453,45395742,19290,2,Snrnp70-201,13885,Snrnp70-201;Snrnp70-207;Snrnp70-216;Snrnp70-215;Snrnp70-214;Snrnp70-204;Snrnp70-209;Snrnp70-213;Snrnp70-206;Snrnp70-205;Snrnp70-217;Snrnp70-203,Snrnp70;Snrnp70;Snrnp70;Snrnp70;Snrnp70;Snrnp70;Snrnp70;Snrnp70;Snrnp70;Snrnp70;Snrnp70;Snrnp70,0;0;0;0;0;0;-491;0;12942;5913;13315;13337,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,8,20637,ENSMUSG00000063511,conserved gene but different region,7,45381825,45381935,111,*,111,10,0.756756757,0.721247563,0.09009009,0.000000173,CpGisland,TRUE,U10,Tr-S
13372,cg17454263,-0.0000345,0.00000951,-3.629886036,0.000331576,loss,ns,0.000000898,0.0000162,0.055579599,0.955712521,pos,ns,-0.00566624,0.004734621,-1.196767318,0.232311689,neg,ns,0.633928938,0.0000714,0.000162823,0.438808634,0.661105874,pos,ns,0.852753819,Nr2f2,Nr2f2_Intergenic_downstream,7,70348927,70348976,70348927,70348928,50,+,CGGCCCTTTGTTCAGCTAATTAACGAAGGCCCAACTCCGAAAGCAGATGT,Downstream (2-3kb),7,70353074,70355237,2164,2,Nr2f2-203,6261,Nr2f2-201;Nr2f2-203,Nr2f2;Nr2f2,0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,19,69,11819,ENSMUSG00000030551,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22536,cg03366802,0.00000178,0.00000212,0.839560006,0.401802115,gain,ns,-0.0000002,0.0000036,-0.055560537,0.955727694,neg,ns,0.002069042,0.001053395,1.964165625,0.05040409,pos,ns,1.297534224,-0.0000395,0.0000362,-1.089640629,0.276717775,neg,ns,0.05934805,Osbpl10,Osbpl10_Exon,9,114978907,114978956,114978907,114978908,50,+,CGGCGCTCGAGGGCGTGCTCAGCAAATACACCAACCTCCTCCAGGGCTGG,Promoter (<=1kb),9,114978569,115232223,253655,1,Osbpl10-207,338,Osbpl10-207;Rps27rt-201,Osbpl10;Rps27rt,0;3783,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,4,74486,ENSMUSG00000040875,conserved gene and region,9,114978532,114978921,390,*,390,55,0.797435897,0.913621263,0.141025641,2.97E-51,CpGisland,TRUE,U3,Pr-B
10819,cg19252313,0.00000109,0.00000327,0.332765958,0.739535877,gain,ns,0.000000308,0.00000555,0.055450468,0.95581531,pos,ns,0.001498539,0.001625355,0.921976459,0.357257832,pos,ns,0.447018242,-0.0000758,0.0000559,-1.355956699,0.176099829,neg,ns,0.913374303,Pck2,Pck2_Exon,14,55544481,55544530,55544529,55544530,50,+,AGCGGCTATGGTGGCAACTCCCTGCTGGGCAAGAAGTGCTTTGCCCTACG,"Exon (Pck2-201/Pck2, exon 5 of 10)",14,55540266,55550017,9752,1,Pck2-201,4215,Pck2-201;Pck2-207;Pck2-205;Pck2-206;Pck2-210;Pck2-209;Pck2-203;Pck2-211;Pck2-213;Pck2-208;Pck2-212;Pck2-202;Pck2-204,Pck2;Pck2;Pck2;Pck2;Pck2;Pck2;Pck2;Pck2;Pck2;Pck2;Pck2;Pck2;Pck2,0;0;0;4091;0;0;4014;0;2076;0;911;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,74551,ENSMUSG00000040618,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19184,cg21872209,0.0000489,0.000015,3.271885829,0.001188827,gain,ns,-0.00000141,0.0000254,-0.055382266,0.955869599,neg,ns,0.061883687,0.007440965,8.316621619,2.90E-15,pos,yes,14.53818081,-0.000454386,0.000255894,-1.775677547,0.076767042,neg,ns,0.370756706,Thra,Thra_Intron,11,98767645,98767694,98767645,98767646,50,+,CGTTGTGTTTTGGGTCAGGATTTTAAAGAAAGATATTTTTATGGTAATTG,"Intron (Thra-201/Thra, intron 9 of 9)",11,98741811,98769006,27196,1,Thra-201,25834,Nr1d1-201;Nr1d1-202;Thra-201;Thra-202;Thra-203,Nr1d1;Nr1d1;Thra;Thra;Thra,0;2732;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,18,21833,ENSMUSG00000058756,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3303,cg20185523,-0.000000067,0.00000231,-0.029062204,0.97683368,loss,ns,-0.000000217,0.00000392,-0.055339065,0.955903988,neg,ns,0.000380836,0.001148081,0.331715369,0.740328342,pos,ns,0.130575624,-0.00000672,0.0000395,-0.170090007,0.865050301,neg,ns,0.96067641,Spopl,Spopl_threeUTR,2,23514996,23515045,23515044,23515045,50,+,TCATCTTACTTGCTGTTCCAGTTTTTCCCATCTTTACACCCAAGTTGTCG,3' UTR,2,23506220,23572104,65885,2,Spopl-203,57059,Spopl-203;Spopl-201;Spopl-204;Spopl-206;Spopl-205,Spopl;Spopl;Spopl;Spopl;Spopl,0;0;0;0;22455,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,3,76857,ENSMUSG00000026771,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1870,cg23223379,0.000278762,0.0000242,11.53527521,7.46E-26,gain,yes,0.00000227,0.0000411,0.055326443,0.955914036,pos,ns,0.07541487,0.012027702,6.27009777,1.21E-09,pos,ns,8.917557832,-0.000542866,0.000413632,-1.312437053,0.190343586,neg,ns,0.577985673,Trib2,Trib2_threeUTR,12,15791738,15791787,15791738,15791739,50,-,CGCACAATTTTATTGATTGAAGAGATTAGGACAAAAACATTAAACCAAAT,3' UTR,12,15791727,15816785,25059,2,Trib2-201,24998,Trib2-201;Trib2-204,Trib2;Trib2,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,2,217410,ENSMUSG00000020601,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12318,cg04330548,-0.00000889,0.00000592,-1.500732552,0.134442547,loss,ns,0.000000556,0.0000101,0.055305256,0.955930901,pos,ns,0.001565829,0.002947005,0.531329093,0.595571243,pos,ns,0.22506628,-0.000207254,0.000101347,-2.044985998,0.041700378,neg,ns,0.886591112,Ctnna3,Ctnna3_Exon,10,63930115,63930164,63930163,63930164,50,-,GTCCAGCTCAGTCTCTAGGTGTGTTTCCATCGTATCTTCCTGTGCATTCG,"Exon (Lrrtm3-201/Lrrtm3, exon 3 of 3)",10,63430098,65002965,1572868,1,Ctnna3-203,500017,Ctnna3-203;Ctnna3-202;Ctnna3-201;Ctnna3-205;Lrrtm3-201;Lrrtm3-202,Ctnna3;Ctnna3;Ctnna3;Ctnna3;Lrrtm3;Lrrtm3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,11,216033,ENSMUSG00000060843,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18889,cg21335694,-0.0000373,0.0000117,-3.181938358,0.00161121,loss,ns,-0.0000011,0.0000199,-0.055192238,0.956020866,neg,ns,-0.007412487,0.005830402,-1.271351035,0.204556857,neg,ns,0.689185958,-0.000246315,0.000200507,-1.228461135,0.220205712,neg,ns,0.85918829,Dach1,Dach1_Intron,14,97840277,97840326,97840277,97840278,50,+,CGCTTGTCTGTTTTTATTAGACCTCAGTAATGGCTTCCCTAGTGGTTTCC,"Intron (Dach1-201/Dach1, intron 6 of 10)",14,97786853,98169543,382691,2,Dach1-201,329217,Dach1-201;Dach1-202;Dach1-203,Dach1;Dach1;Dach1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,76,13134,ENSMUSG00000055639,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13389,cg02027042,0.0000165,0.00000286,5.791098808,1.72E-08,gain,yes,0.000000268,0.00000485,0.055160946,0.956045775,pos,ns,0.002756381,0.001421882,1.93854402,0.053464396,pos,ns,1.271935333,-0.0000798,0.0000489,-1.631377883,0.103826049,neg,ns,0.039453903,Nr2f2,Nr2f2_Exon,7,70359346,70359395,70359346,70359347,50,-,CGTTAATACGGCGAAGTGCATAAAATTGCCATTTGTAATTTGAACCTCCT,"Exon (Nr2f2-206/Nr2f2, exon 1 of 1)",7,70351944,70360593,8650,2,Nr2f2-201,1198,Nr2f2-201;Nr2f2-203;Nr2f2-202;Nr2f2-205;Nr2f2-204;Nr2f2-206,Nr2f2;Nr2f2;Nr2f2;Nr2f2;Nr2f2;Nr2f2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,24,69,11819,ENSMUSG00000030551,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22370,cg11336271,-0.00000122,0.000000964,-1.260506326,0.208434706,loss,ns,-8.99E-08,0.00000164,-0.054872807,0.956275143,neg,ns,0.000479903,0.000479793,1.000230709,0.317978972,pos,ns,0.497601599,-0.0000161,0.0000165,-0.977900429,0.328886083,neg,ns,0.975864854,Atp2b2,Atp2b2_threeUTR,6,113746709,113746758,113746709,113746710,50,-,CGATCATGGTATTCAAAATGTCTTTTGCACTGTACAAGTTTATGGAAAAA,3' UTR,6,113743831,114042026,298196,2,Atp2b2-203,295268,Atp2b2-203;Atp2b2-201;Atp2b2-206;Atp2b2-208;Atp2b2-202,Atp2b2;Atp2b2;Atp2b2;Atp2b2;Atp2b2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,8,11941,ENSMUSG00000030302,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18978,cg23003419,-0.0000177,0.00000499,-3.541740899,0.000458567,loss,ns,0.000000465,0.00000849,0.054856204,0.95628836,pos,ns,-0.003576168,0.002485822,-1.438625945,0.151265361,neg,ns,0.820260512,-0.0000981,0.0000855,-1.148035043,0.251839239,neg,ns,0.897590786,Nfia,Nfia_Intron,4,98103202,98103251,98103250,98103251,50,-,GAGCTGTTGATCAAGCATAAAATACTCTTTAAGCTGACAGAATAGCAGCG,"Intron (Nfia-202/Nfia, intron 10 of 10)",4,97777608,98118871,341264,1,Nfia-202,325594,Nfia-202;Nfia-203;Nfia-205;Nfia-201;Nfia-204,Nfia;Nfia;Nfia;Nfia;Nfia,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,44,18027,ENSMUSG00000028565,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
24125,cg25073742,0.0000827,0.0000182,4.531790667,0.00000836,gain,ns,0.0000017,0.000031,0.054795325,0.956336822,pos,ns,0.026977031,0.009079882,2.971077284,0.003199672,pos,ns,2.4948945,-0.000777865,0.000312256,-2.491110341,0.013257286,neg,ns,0.457602372,Anapc5,Anapc5_threeUTR,5,122802138,122802187,122802186,122802187,50,-,CAAAATGTACTGCCTTCTTCACAGAATGCTCCAGCAGAACATAGCTATCG,3' UTR,5,122787459,122821339,33881,2,Anapc5-201,19152,Anapc5-201;Anapc5-202;Anapc5-203;Anapc5-208;Anapc5-205;Anapc5-212;Anapc5-218;Anapc5-209;Anapc5-204;Anapc5-215;Anapc5-217;Anapc5-216;Anapc5-207;Anapc5-214,Anapc5;Anapc5;Anapc5;Anapc5;Anapc5;Anapc5;Anapc5;Anapc5;Anapc5;Anapc5;Anapc5;Anapc5;Anapc5;Anapc5,0;0;0;0;0;0;0;-2408;0;0;0;0;0;18831,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,6,59008,ENSMUSG00000029472,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4874,cg21094153,-0.0000016,0.00000202,-0.795161605,0.427127886,loss,ns,0.000000188,0.00000343,0.054773745,0.956354,pos,ns,0.000695281,0.001004084,0.692452345,0.489171669,pos,ns,0.310538704,-0.0000333,0.0000345,-0.965401453,0.33509628,neg,ns,0.949513512,Acap2,Acap2_Exon,16,31107564,31107613,31107612,31107613,50,-,AGAGTGAATCTAGCTCATCAGGACAAAACAGAGACTCCCGCCTGGCCTCG,"Exon (Acap2-202/Acap2, exon 18 of 24)",16,31092412,31201245,108834,2,Acap2-204,93632,Acap2-204;Acap2-201;Acap2-203;Acap2-202;Acap2-206;Acap2-207,Acap2;Acap2;Acap2;Acap2;Acap2;Acap2,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,4,78618,ENSMUSG00000049076,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24169,cg18928988,-0.0000557,0.0000126,-4.408129444,0.0000144,loss,ns,-0.00000118,0.0000215,-0.054717709,0.956398607,neg,ns,-0.011333359,0.006291253,-1.801446849,0.072604057,neg,ns,1.139039108,-0.000255617,0.000216356,-1.1814672,0.238322736,neg,ns,0.185060732,Setd1b,Setd1b_Exon,5,123141141,123141190,123141141,123141142,50,-,CGCTGATTGGCTGCCGCGCCCTGCCGCCCTGCTCCAGCCAATTACCTACC,Promoter (1-2kb),5,123142193,123168629,26437,1,Setd1b-204,-1052,Setd1b-202;Setd1b-206;Setd1b-204;Setd1b-201,Setd1b;Setd1b;Setd1b;Setd1b,0;0;0;-1767,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,9,208043,ENSMUSG00000038384,mapped to different genes,5,123141109,123141393,285,*,285,26,0.603508772,1.033328685,0.09122807,4.95E-19,CpGisland,TRUE,U1,Pr-A
20838,cg25399166,-0.0000161,0.00000471,-3.411199162,0.000732526,loss,ns,0.000000435,0.000008,0.054414115,0.956640284,pos,ns,-0.003031684,0.002342511,-1.294202433,0.196558793,neg,ns,0.706507523,0.0000931,0.0000806,1.155681455,0.24870141,pos,ns,0.885448163,Agrp,Agrp_Exon,8,105616904,105616953,105616952,105616953,50,+,CCATGTGGTTGTGGGCAGTGTCTCCTGTGAGACCAAGGACCTGTTTGCCG,"Exon (Ripor1-201/Ripor1, exon 11 of 22)",8,105566698,105637393,70696,2,Agrp-202,20440,Agrp-202;Ripor1-201,Agrp;Ripor1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,11604,ENSMUSG00000005705,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8479,cg27200805,0.00000884,0.00000228,3.877853657,0.000128693,gain,ns,-0.00000021,0.00000387,-0.054187148,0.956820964,neg,ns,0.00341812,0.001134623,3.012559176,0.002803981,pos,ns,2.552224869,-0.0000592,0.000039,-1.517504499,0.130158457,neg,ns,0.059348373,Lbx1,Lbx1_Intergenic_downstream,19,45223790,45223839,45223838,45223839,50,+,GCATGCAGATTTACTTCGCTCATTGCCACATAACTCATCCCTAAAAGCCG,Distal Intergenic,19,45232684,45235812,3129,2,Lbx1-201,11973,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,30,50,16814,ENSMUSG00000025216,mapped to different genes,19,45223712,45223906,195,*,195,15,0.564102564,0.969827586,0.076923077,4.54E-10,CpGisland,TRUE,U13,Hc-P
9312,cg27473928,0.0000141,0.00000513,2.739214252,0.006515126,gain,ns,-0.000000472,0.00000872,-0.054131105,0.956865578,neg,ns,-0.000592482,0.002553408,-0.23203565,0.816663424,neg,ns,0.087956895,0.0000069,0.0000878,0.078571954,0.937423788,pos,ns,0.809903434,Nr4a3,Nr4a3_Exon,4,48070994,48071043,48071042,48071043,50,-,AACACTGCTGAAGATAAGTTTGTGTTCTGCAATGGACTTGTCCTGCATCG,"Exon (Nr4a3-201/Nr4a3, exon 7 of 8)",4,48045153,48086445,41293,1,Nr4a3-201,25841,Nr4a3-201;Nr4a3-203,Nr4a3;Nr4a3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,20,18124,ENSMUSG00000028341,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3795,cg18633287,-0.00000211,0.00000104,-2.029586974,0.043252447,loss,ns,9.54E-08,0.00000176,0.054068373,0.956915517,pos,ns,0.000499299,0.000516779,0.966175627,0.334709435,pos,ns,0.475332045,-0.000000606,0.0000178,-0.03410283,0.972817099,neg,ns,0.027915551,Zmiz1,Zmiz1_fiveUTR,14,25459191,25459240,25459239,25459240,50,+,AATAGAATAGCCAATGTAATCTGACACTTCAACTTGCTCGGCTCCGGGCG,Promoter (<=1kb),14,25459224,25666743,207520,1,Zmiz1-208,0,Zmiz1-206;Zmiz1-208;Zmiz1-201;Zmiz1-202,Zmiz1;Zmiz1;Zmiz1;Zmiz1,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,5,15,328365,ENSMUSG00000007817,conserved gene but different region,14,25459229,25459638,410,*,410,55,0.704878049,1.080084299,0.134146342,7.65E-50,CpGisland,TRUE,U1,Pr-A
12222,cg18724689,0.00000115,0.00000193,0.596491,0.551282594,gain,ns,0.000000177,0.00000328,0.054038694,0.956939144,pos,ns,0.000860328,0.000961956,0.894352296,0.371827262,pos,ns,0.429658772,-0.000067,0.0000331,-2.023816736,0.043846531,neg,ns,0.94961087,Iqch,Iqch_Intron,9,63523692,63523741,63523740,63523741,50,+,GCAGCCCCCACATAATGACTTTATTTGCTTAATCCCCAAATTAAACGCCG,"Intron (Gm16759-201/Gm16759-201, intron 3 of 4)",9,63421455,63602493,181039,2,Iqch-201,78752,Iqch-201;Iqch-203;Iqch-204;Iqch-202;Iqch-206,Iqch;Iqch;Iqch;Iqch;Iqch,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,22,78250,ENSMUSG00000037801,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12534,cg26544327,-0.0000225,0.00000856,-2.626937563,0.009043911,loss,ns,-0.000000785,0.0000146,-0.05398296,0.956983513,neg,ns,0.001540651,0.004262876,0.361411091,0.718038352,pos,ns,0.143852358,-0.000152497,0.0001466,-1.040223333,0.299046765,neg,ns,0.842166924,Grb14,Grb14_Exon,2,64929973,64930022,64929973,64929974,50,+,CGGGGCCCTCCCGCTTTGTTAGGCTAGAAGGCCACAGCACATTGTTTATC,"Exon (Grb14-201/Grb14, exon 8 of 14)",2,64912476,65022782,110307,2,Grb14-201,92760,Grb14-201;Grb14-203;Grb14-208,Grb14;Grb14;Grb14,0;0;45747,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,50915,ENSMUSG00000026888,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8859,cg10096778,-0.0000022,0.00000498,-0.442209858,0.658645703,loss,ns,-0.000000456,0.00000846,-0.0538162,0.957116267,neg,ns,0.001498875,0.00247995,0.604397501,0.54602148,pos,ns,0.262790272,-0.0000753,0.0000853,-0.883457696,0.377673639,neg,ns,0.889597171,Pprc1,Pprc1_Exon,19,46069130,46069179,46069130,46069131,50,-,CGCCCAGGAGGGAACCCTGAAGCCTGAAGGAGTTACGGAGGCCAAACATC,"Exon (Pprc1-203/Pprc1, exon 9 of 14)",19,46056539,46072911,16373,1,Pprc1-203,12591,Pprc1-203;Pprc1-202;Pprc1-201;Pprc1-206;Pprc1-209,Pprc1;Pprc1;Pprc1;Pprc1;Pprc1,0;0;0;0;-2575,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,Exon,4,4,226169,ENSMUSG00000055491,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19112,cg11604092,-0.0000168,0.0000076,-2.21262582,0.027651917,loss,ns,-0.000000695,0.0000129,-0.053788898,0.957138001,neg,ns,-0.004322915,0.003784952,-1.142132144,0.254280489,neg,ns,0.594686963,0.00025821,0.000130164,1.983727565,0.048168069,pos,ns,0.855962267,Kcnk10,Kcnk10_Exon,12,98489998,98490047,98490046,98490047,50,+,TCCAAAGATGGCATATAAAATACAAAAGATTTTGCCTCCTTCAGTGCTCG,"Exon (Kcnk10-202/Kcnk10, exon 4 of 7)",12,98429437,98578310,148874,2,Kcnk10-202,88263,Kcnk10-202;Kcnk10-201;Kcnk10-203;Kcnk10-204,Kcnk10;Kcnk10;Kcnk10;Kcnk10,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,72258,ENSMUSG00000033854,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8163,cg19535466,0.000107761,0.0000114,9.447057811,8.81E-19,gain,yes,-0.00000104,0.0000194,-0.053767817,0.957154784,neg,ns,0.011860352,0.0056773,2.089083141,0.037515464,pos,ns,1.425789674,-0.0000198,0.000195242,-0.101628655,0.919117135,neg,ns,0.580675415,Pax2,Pax2_Intron,19,44813582,44813631,44813582,44813583,50,+,CGCCGGCCTCTGCCACCAGATCAGGCAATCAATAGGGGCAGCAGATATCA,"Intron (Pax2-203/Pax2, intron 5 of 9)",19,44756045,44837851,81807,1,Pax2-203,57537,Pax2-203;Pax2-201;Pax2-202,Pax2;Pax2;Pax2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,35,166,18504,ENSMUSG00000004231,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16236,cg05247990,-0.00000494,0.00000587,-0.841775016,0.400562797,loss,ns,0.000000535,0.00000997,0.053710979,0.957200032,pos,ns,-0.005816336,0.002920733,-1.991396284,0.047314641,neg,ns,1.325004449,0.000183222,0.000100444,1.824123383,0.069096002,pos,ns,0.84276797,Bnc2,Bnc2_Intron,4,84634769,84634818,84634817,84634818,50,-,ACGAGGGACACAAATCCCCTGATGGAACTGAATGCATTCCAAGCTCCCCG,"Intron (Bnc2-201/Bnc2, intron 1 of 7)",4,84275095,84675034,399940,2,Bnc2-201,40216,Bnc2-201;Bnc2-202;Bnc2-214;Bnc2-215;Bnc2-206;Bnc2-211;Bnc2-217;Bnc2-207;Bnc2-203;Bnc2-209;Bnc2-204;Bnc2-210,Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,91,242509,ENSMUSG00000028487,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20540,cg22729108,-0.00000902,0.00000495,-1.822014112,0.069416291,loss,ns,0.00000045,0.00000841,0.053476116,0.957387004,pos,ns,-0.00496159,0.002462653,-2.014733573,0.044795724,neg,ns,1.348763442,0.000191436,0.0000847,2.260423379,0.024488386,pos,ns,0.885329777,Fam181a,Fam181a_Intron,12,103314164,103314213,103314212,103314213,50,+,GATTTAAGTCCCTAACTGTTTGACTACAAATGCAAGGGGACCGTGCAACG,"Intron (Fam181a-203/Fam181a, intron 1 of 1)",12,103310975,103317065,6091,1,Fam181a-203,3189,Fam181a-203;Fam181a-202;Fam181a-201,Fam181a;Fam181a;Fam181a,0;-740;-746,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,9,100504156,ENSMUSG00000096753,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
934,cg21528412,-0.0000688,0.0000108,-6.367150252,6.93E-10,loss,yes,-0.000000982,0.0000184,-0.053475074,0.957387834,neg,ns,-0.006174749,0.005378827,-1.147973051,0.251864791,neg,ns,0.59883254,0.000195044,0.000184977,1.054421355,0.292511155,pos,ns,0.895535568,Sgk3,Sgk3_threeUTR,1,9881593,9881642,9881593,9881594,50,+,CGGAAACTGGATGGAAAATTTTATGCTGTCAAAGTGTTACAGAAAAAAAT,3' UTR,1,9798107,9900843,102737,1,Sgk3-202,83486,Sgk3-202;Sgk3-209;Sgk3-203;Sgk3-208;Sgk3-205;Sgk3-204;Sgk3-201;Sgk3-212,Sgk3;Sgk3;Sgk3;Sgk3;Sgk3;Sgk3;Sgk3;Sgk3,0;0;0;0;0;0;0;-1825,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,170755,ENSMUSG00000025915,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16001,cg06878819,0.0000157,0.00000539,2.921116244,0.00374384,gain,ns,0.000000489,0.00000916,0.053366156,0.957474544,pos,ns,0.000220832,0.002682923,0.082310114,0.934453232,pos,ns,0.02944243,-0.0000582,0.0000923,-0.630612427,0.528758578,neg,ns,0.682178868,Dysf,Dysf_Intron,6,84120055,84120104,84120103,84120104,50,+,CTAATATCCTGGCATTTCCAAAGACACCGGGTTTCATAATCTTCCTGGCG,"Intron (Dysf-204/Dysf, intron 30 of 54)",6,84008590,84211060,202471,1,Dysf-204,111465,Dysf-204;Dysf-205;Dysf-213;Dysf-215;Dysf-210;Dysf-211;Dysf-212;Dysf-214;Dysf-216;Dysf-202;Dysf-203;Dysf-201;Dysf-209,Dysf;Dysf;Dysf;Dysf;Dysf;Dysf;Dysf;Dysf;Dysf;Dysf;Dysf;Dysf;Dysf,0;0;0;0;0;0;0;0;0;0;0;0;13504,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,15,26903,ENSMUSG00000033788,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2079,cg20007005,-0.0000127,0.00000356,-3.562875292,0.000424515,loss,ns,-0.000000322,0.00000604,-0.053348756,0.957488396,neg,ns,-0.000175941,0.001770612,-0.099367166,0.920910977,neg,ns,0.03578235,-0.000134858,0.0000609,-2.214743292,0.027504612,neg,ns,0.939936238,Wnt2,Wnt2_Exon,6,18008592,18008641,18008592,18008593,50,-,CGGTCCCTGATACAGTAGTCTGGAGAATTCTCAAAATACACGAGGTCATT,"Exon (Wnt2-201/Wnt2, exon 4 of 5)",6,17988940,18030585,41646,2,Wnt2-201,21944,Wnt2-201,Wnt2,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,22413,ENSMUSG00000010797,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19689,cg09387535,-0.00000159,0.00000211,-0.755247177,0.450674109,loss,ns,-0.000000191,0.00000358,-0.053338072,0.957496901,neg,ns,0.001231166,0.001047762,1.17504318,0.240879187,pos,ns,0.618200724,-0.0000122,0.000036,-0.337740185,0.735787576,neg,ns,0.053112538,Stag1,Stag1_fiveUTR,9,100643609,100643658,100643609,100643610,50,+,CGCCATTGGCGTGTGGAAAATGCCACCAGATGGCGGGTTAGGATTGCAGC,Promoter (<=1kb),9,100643613,100712690,69078,1,Stag1-204,0,Stag1-205;Stag1-213;Stag1-206;Stag1-210;Stag1-204;Stag1-212;Stag1-201;Stag1-208;Stag1-216;Stag1-203;Stag1-207,Stag1;Stag1;Stag1;Stag1;Stag1;Stag1;Stag1;Stag1;Stag1;Stag1;Stag1,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,6,15,20842,ENSMUSG00000037286,conserved gene and region,9,100642808,100644342,1535,*,1535,206,0.725732899,1.021439208,0.134201954,3.49E-185,CpGisland,TRUE,U1,Pr-A
18802,cg11203143,-0.0000176,0.00000486,-3.620163138,0.000343758,loss,ns,0.00000044,0.00000826,0.053303446,0.957524468,pos,ns,0.009863053,0.002420693,4.074474338,0.0000586,pos,ns,4.23181829,-0.000974698,0.0000832,-11.70843879,1.82E-26,neg,yes,0.937077394,Arhgap23,Arhgap23_Exon,11,97463622,97463671,97463670,97463671,50,+,ATCTCTTTCAGGCTGAGGACCGGGATGACATGCTGGGCTGGATCAGAGCG,"Exon (Arhgap23-203/Arhgap23, exon 12 of 24)",11,97415533,97502402,86870,1,Arhgap23-203,48089,Arhgap23-203;Arhgap23-202;Arhgap23-204,Arhgap23;Arhgap23;Arhgap23,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,8,58996,ENSMUSG00000049807,conserved gene but different region,11,97463388,97463699,312,*,312,36,0.692307692,0.98457223,0.115384615,4.29E-30,CpGisland,TRUE,U10,Tr-S
22168,cg07793308,0.0000297,0.00000985,3.010963338,0.002818333,gain,ns,-0.000000891,0.0000167,-0.053258832,0.957559985,neg,ns,0.01802422,0.004902663,3.676414028,0.000278694,pos,ns,3.554871863,0.000193458,0.000168602,1.147424451,0.252090996,pos,ns,0.099068966,Znrf1,Znrf1_Exon,8,111537479,111537528,111537479,111537480,50,+,CGGGATGCTGTACCTGGGCTCCCGAGCCTCGCTGGCGGATGCTCTACCTC,Promoter (<=1kb),8,111537487,111622501,85015,1,Znrf1-214,0,Znrf1-205;Znrf1-203;Znrf1-204;Znrf1-201;Znrf1-207;Znrf1-209;Znrf1-214;Znrf1-215;Znrf1-213;Znrf1-202;Znrf1-206;Znrf1-210,Znrf1;Znrf1;Znrf1;Znrf1;Znrf1;Znrf1;Znrf1;Znrf1;Znrf1;Znrf1;Znrf1;Znrf1,0;0;0;0;0;0;0;-50;-815;-815;-937;-3731,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,170737,ENSMUSG00000033545,mapped to different genes,8,111537011,111537629,619,*,619,63,0.709208401,0.809603886,0.10177706,1.63E-48,CpGisland,TRUE,NA,NRS
4425,cg05062755,0.00000337,0.00000113,2.988696403,0.003025742,gain,ns,-0.000000102,0.00000192,-0.053242491,0.957572995,neg,ns,0.001072652,0.000561334,1.910898881,0.056939768,pos,ns,1.24458431,-0.0000135,0.0000193,-0.700427419,0.484185762,neg,ns,0.972064262,Ddx31,Ddx31_Intron,2,28885168,28885217,28885216,28885217,50,-,TATTTAACACTCTAGAGGGATTTTTGTGCTTATTCGGTCCTGGCTGCCCG,"Intron (Ddx31-201/Ddx31, intron 17 of 19)",2,28840459,28905571,65113,1,Ddx31-201,44709,Ddx31-201,Ddx31,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,5,227674,ENSMUSG00000026806,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11597,cg25069122,-0.00000207,0.000000855,-2.421810956,0.016016837,loss,ns,7.73E-08,0.00000145,0.053208107,0.957600368,pos,ns,-0.0000172,0.000425531,-0.040338007,0.96784962,neg,ns,0.014192116,0.000025,0.0000146,1.710353463,0.08820103,pos,ns,0.974339961,Arih1,Arih1_threeUTR,9,59396392,59396441,59396392,59396393,50,-,CGAAGACATAAGTGTACATGAGTGTGGCACGACACTGGCAGAGGACATCA,3' UTR,9,59388258,59486614,98357,2,Arih1-207,90173,Arih1-207;Arih1-201;Arih1-202;Arih1-206;Arih1-203,Arih1;Arih1;Arih1;Arih1;Arih1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,13,23806,ENSMUSG00000025234,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3540,cg13962734,-0.00000345,0.00000462,-0.746750611,0.455780081,loss,ns,0.000000417,0.00000784,0.053203483,0.957604049,pos,ns,0.003611469,0.00229731,1.572042573,0.116960725,pos,ns,0.931959947,-0.000178051,0.000079,-2.253693996,0.024913792,neg,ns,0.900008082,Gm12067,Gm12067_Intron,11,24448261,24448310,24448309,24448310,50,-,AAACAAATAGTAATCAACTAAACCTGTTACCTCTGAGTAGAGATGTCACG,"Intron (Gm12068-201/Gm12068-201, intron 1 of 3)",11,24552438,24553962,1525,2,Gm12067-201,105701,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,58,100417843,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10501,cg21045012,-0.0000322,0.00000532,-6.048242777,4.21E-09,loss,yes,0.00000048,0.00000904,0.053156382,0.957641547,pos,ns,-0.009512806,0.002648227,-3.592142032,0.000381262,neg,ns,3.418776322,0.000129388,0.0000911,1.420721609,0.156402746,pos,ns,0.914043143,Hecw2,Hecw2_Exon,1,53913243,53913292,53913291,53913292,50,+,GGTTAGAATGCAGCACGGTGAAGAACTCTGGGCTGATGAGGAACTTCACG,"Exon (Hecw2-203/Hecw2, exon 13 of 29)",1,53806876,54194048,387173,2,Hecw2-203,280756,Hecw2-203;Hecw2-201,Hecw2;Hecw2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,6,329152,ENSMUSG00000042807,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11114,cg20352599,-0.0000118,0.00000355,-3.321910529,0.001000956,loss,ns,-0.000000321,0.00000604,-0.053121882,0.957669013,neg,ns,-0.002192203,0.001768714,-1.239433539,0.21612248,neg,ns,0.665300058,0.0000645,0.0000608,1.060879364,0.289570545,pos,ns,0.92713214,Fbxo8,Fbxo8_Intergenic_downstream,8,56639479,56639528,56639527,56639528,50,-,TTAATGCATCTGTCCAGAACACGTAATTACTCGGTCATAACATTCCCCCG,Distal Intergenic,8,56587920,56591473,3554,1,Fbxo8-205,51608,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,50753,ENSMUSG00000038206,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23477,cg14040266,0.00000499,0.0000032,1.558627366,0.12010488,gain,ns,0.000000287,0.00000544,0.052790446,0.957932876,pos,ns,-0.000230391,0.001592463,-0.144675993,0.885060708,neg,ns,0.053026939,-0.0000336,0.0000548,-0.614269187,0.539488003,neg,ns,0.063711263,Rbfox3,Rbfox3_Intron,11,118551225,118551274,118551273,118551274,50,+,CCTAAGGACTAATCAGACATTTGAACTGAGCTGTGCTAACAAAGCCCTCG,"Intron (Rbfox3-205/Rbfox3, intron 3 of 13)",11,118489762,118909550,419789,2,Rbfox3-205,358276,Rbfox3-205;Rbfox3-203;Rbfox3-201;Rbfox3-202;Rbfox3-204;Rbfox3-206;Rbfox3-209,Rbfox3;Rbfox3;Rbfox3;Rbfox3;Rbfox3;Rbfox3;Rbfox3,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,13,52897,ENSMUSG00000025576,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
15162,cg14056866,-0.00000332,0.00000107,-3.09613332,0.002139726,loss,ns,-9.62E-08,0.00000182,-0.05274297,0.957970672,neg,ns,-0.000176986,0.000534327,-0.331230857,0.740693906,neg,ns,0.130361228,-0.0000292,0.0000184,-1.591652793,0.112481909,neg,ns,0.014890283,Polg,Polg_Promoter,7,79466438,79466487,79466486,79466487,50,+,TAAGGCGTCTGACTTCGGATCAGAAGATTGCAGGTTCGAGTCCTGCCGCG,Promoter (<=1kb),7,79446231,79466362,20132,2,Polg-201,-76,Polg-201;Polg-203;Polg-213;Polg-205;Polg-210;Polg-216;Polg-202,Polg;Polg;Polg;Polg;Polg;Polg;Polg,0;0;0;0;-4634;0;-368,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,16,18975,ENSMUSG00000039176,conserved gene but different region,7,79465738,79466491,754,*,754,94,0.716180371,0.976576279,0.124668435,2.44E-81,CpGisland,TRUE,U1,Pr-A
10624,cg24549868,-0.00000325,0.00000102,-3.19787869,0.001527454,loss,ns,-9.09E-08,0.00000173,-0.052655115,0.958040617,neg,ns,-0.000104223,0.000505743,-0.206078138,0.836865148,neg,ns,0.077344518,-0.0000304,0.0000174,-1.746681743,0.081682962,neg,ns,0.013023284,Acin1,Acin1_fiveUTR,14,54686633,54686682,54686633,54686634,50,-,CGACGGCTTCGGGCATCTTCGGTAATTTCCGCCAACGCCCTTCGAACGTA,Promoter (<=1kb),14,54673754,54686633,12880,2,Acin1-212,0,1700123O20Rik-201;1700123O20Rik-202;1700123O20Rik-204;1700123O20Rik-203;Acin1-201;Acin1-218;Acin1-203;Acin1-206;Acin1-212;Acin1-210,1700123O20Rik;1700123O20Rik;1700123O20Rik;1700123O20Rik;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1,0;0;0;-362;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,7,22,56215,ENSMUSG00000022185,conserved gene and region,14,54686230,54687055,826,*,826,78,0.633171913,0.949845201,0.094430993,3.48E-57,CpGisland,TRUE,U1,Pr-A
4271,cg06363348,0.000014,0.00000571,2.447675551,0.014932535,gain,ns,0.000000509,0.0000097,0.052463451,0.958193207,pos,ns,-0.001345689,0.0028413,-0.47361745,0.636106093,neg,ns,0.196470445,0.000141855,0.0000977,1.451769951,0.147576853,pos,ns,0.934022161,Grm8,Grm8_Exon,6,28125645,28125694,28125693,28125694,50,-,TGATGGACACGGAGCTTGCTGCAGCACCTATGACGCCAGAAATCTTGTCG,"Exon (Grm8-202/Grm8, exon 2 of 11)",6,27275119,28134545,859427,2,Grm8-202,8851,Grm8-202;Grm8-203;Grm8-201;Grm8-204;Grm8-206;Grm8-205,Grm8;Grm8;Grm8;Grm8;Grm8;Grm8,0;0;0;0;0;7435,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,14823,ENSMUSG00000024211,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16045,cg04697817,-0.00000507,0.00000573,-0.885352017,0.37665302,loss,ns,0.000000511,0.00000974,0.052435015,0.958215847,pos,ns,-0.001266542,0.002852325,-0.44403866,0.657324427,neg,ns,0.182220228,-0.0000328,0.0000981,-0.334583219,0.738165764,neg,ns,0.898940417,Bnc2,Bnc2_Intron,4,84282676,84282725,84282676,84282677,50,-,CGTAATATGCTAATAAGAAAGCATGACATATATGGAAAAGCCAAACAGAT,"Intron (Bnc2-201/Bnc2, intron 7 of 7)",4,84275095,84675034,399940,2,Bnc2-201,392309,Bnc2-201;Bnc2-202;Bnc2-214;Bnc2-218;Bnc2-215;Bnc2-222;Bnc2-216;Bnc2-213;Bnc2-219,Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,91,242509,ENSMUSG00000028487,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25588,cg17525319,0.0000211,0.00000377,5.581141223,5.22E-08,gain,yes,0.000000336,0.00000641,0.052385425,0.958255327,pos,ns,0.002420058,0.001878767,1.288109923,0.198668339,pos,ns,0.701871339,0.00000389,0.0000646,0.060134569,0.952087205,pos,ns,0.916947361,Ebf3,Ebf3_Intron,7,137269427,137269476,137269475,137269476,50,-,ATATCAATATTTGAATAAATTGTGGATTTTAAACTTCTCACTCTGATGCG,"Intron (Ebf3-204/Ebf3, intron 6 of 15)",7,137193673,137314445,120773,2,Ebf3-204,44969,Ebf3-204;Ebf3-201;Ebf3-202;Ebf3-203;Ebf3-208;Ebf3-205,Ebf3;Ebf3;Ebf3;Ebf3;Ebf3;Ebf3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,62,84,13593,ENSMUSG00000010476,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14170,cg18750960,0.0000569,0.00000688,8.272918251,3.91E-15,gain,yes,0.000000612,0.0000117,0.052317413,0.958309475,pos,ns,0.013410821,0.003424816,3.915778701,0.000110858,pos,ns,3.955231107,-0.000111048,0.000117779,-0.94284845,0.346492621,neg,ns,0.083121786,Gm28230,Gm28230_Exon,2,74727286,74727335,74727334,74727335,50,+,TGAGTTCGTATATGGTGAACTCCAAGTATGTGGACCCCAAGTTCCCTCCG,Promoter (<=1kb),2,74726728,74747918,21191,1,Gm28230-201,558,Gm28230-201;Hoxd3-203;Hoxd4-203;Hoxd4-201;Hoxd4-202,Gm28230;Hoxd3;Hoxd4;Hoxd4;Hoxd4,0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,23,,NA,mapped to different genes,2,74727292,74727741,450,*,450,42,0.691111111,0.78183172,0.093333333,7.43E-31,CpGisland,TRUE,NA,NRS
25861,cg20954249,0.0000182,0.0000039,4.664986305,0.0000046,gain,ns,-0.000000346,0.00000663,-0.052240208,0.958370941,neg,ns,0.003753368,0.001941729,1.933002919,0.054146356,pos,ns,1.266430767,-0.0000205,0.0000668,-0.306335271,0.759555025,neg,ns,0.080346929,Pax7,Pax7_Intron,4,139824733,139824782,139824733,139824734,50,-,CGCTCCCCCGGAGCCTAATTAAATTTGGCAGGTCCTTGTACACACAATCA,"Intron (Pax7-201/Pax7, intron 4 of 8)",4,139737062,139833528,96467,2,Pax7-201,8746,Pax7-201;Pax7-202,Pax7;Pax7,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,27,18509,ENSMUSG00000028736,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
7851,cg06691921,-0.0000244,0.00001,-2.440107177,0.015242887,loss,ns,-0.000000887,0.000017,-0.052192137,0.958409214,neg,ns,-0.003231467,0.004977156,-0.649259654,0.516651296,neg,ns,0.286802477,-0.000170919,0.000171164,-0.998567497,0.318783055,neg,ns,0.732816407,Ldb2,Ldb2_Intron,5,44538084,44538133,44538084,44538085,50,-,CGTACTGTGAGCTCTGACATTTTGTTTCTGTGGTAACCAAAATCAGCTGA,"Intron (Ldb2-207/Ldb2, intron 3 of 8)",5,44472132,44799619,327488,2,Ldb2-207,261486,Ldb2-207;Ldb2-201;Ldb2-204;Ldb2-205;Ldb2-206;Ldb2-202;Ldb2-203,Ldb2;Ldb2;Ldb2;Ldb2;Ldb2;Ldb2;Ldb2,0;0;0;0;0;-2987;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,9,16826,ENSMUSG00000039706,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12466,cg14561405,-0.0000595,0.00000743,-8.009312641,2.35E-14,loss,yes,-0.000000658,0.0000126,-0.052124146,0.958463345,neg,ns,0.005785038,0.003695748,1.565322608,0.118527485,pos,ns,0.926180931,-0.000286985,0.000127096,-2.258010027,0.024640216,neg,ns,0.698915222,Onecut2,Onecut2_threeUTR,18,64396070,64396119,64396118,64396119,50,+,AAAGTGTGACATAACCACGGGACGAGTGCCTTGCTTGAACCAAAGCAACG,3' UTR,18,64340020,64400987,60968,1,Onecut2-201,56050,Onecut2-201,Onecut2,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,19,225631,ENSMUSG00000045991,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21799,cg00286916,0.0000327,0.00000635,5.15556848,0.000000452,gain,yes,0.000000562,0.0000108,0.052079723,0.958498713,pos,ns,0.001617847,0.003160575,0.511883887,0.609096728,pos,ns,0.215313734,0.0000702,0.000108692,0.645427705,0.51912747,pos,ns,0.049176289,Lmo1,Lmo1_fiveUTR,7,109170121,109170170,109170121,109170122,50,+,CGCTTGTCCGGCTCTTAACCTAGATTGCACTCAGCTAGAATTACATTCAG,Promoter (<=1kb),7,109138572,109170519,31948,2,Lmo1-201,349,Lmo1-201;Lmo1-202;Lmo1-203,Lmo1;Lmo1;Lmo1,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,66,109594,ENSMUSG00000036111,conserved gene and region,7,109169630,109170130,501,*,501,61,0.724550898,0.930262998,0.121756487,2.91E-52,CpGisland,TRUE,U3,Pr-B
1344,cg26713169,-0.0000409,0.0000121,-3.375199902,0.000831453,loss,ns,0.00000107,0.0000206,0.052036713,0.958532955,pos,ns,-0.005143744,0.00603035,-0.852976065,0.39433113,neg,ns,0.404138937,0.000171905,0.000207383,0.828924912,0.407784675,pos,ns,0.710513169,Cadps,Cadps_Intron,14,12393585,12393634,12393585,12393586,50,-,CGAAAGAGTGAATGAAATTGAATAAGCTCTCAGTACTTGAGGCGCACAGC,"Intron (Cadps-210/Cadps, intron 27 of 28)",14,12372563,12823053,450491,2,Cadps-210,429419,Cadps-210;Cadps-202;Cadps-203;Cadps-204;Cadps-201;Cadps-212;Cadps-208,Cadps;Cadps;Cadps;Cadps;Cadps;Cadps;Cadps,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,34,27062,ENSMUSG00000054423,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25250,cg26741673,0.0000307,0.00000301,10.1915575,3.16E-21,gain,yes,-0.000000266,0.00000511,-0.051968138,0.958587552,neg,ns,0.00359123,0.001498192,2.397042265,0.017119801,pos,ns,1.766501289,0.0000518,0.0000515,1.005466654,0.315456369,pos,ns,0.090434359,Cxxc4,Cxxc4_Exon,3,134240265,134240314,134240313,134240314,50,+,TGAACACTGCAGACCTTTGGCGGGGGAATGCATGAACAAGCTCAAATGCG,"Exon (Cxxc4-203/Cxxc4, exon 3 of 4)",3,134236484,134259620,23137,1,Cxxc4-204,3781,Cxxc4-204;Cxxc4-203;Cxxc4-202;Cxxc4-201;Cxxc4-205,Cxxc4;Cxxc4;Cxxc4;Cxxc4;Cxxc4,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,18,20,319478,ENSMUSG00000044365,mapped to different genes,3,134240265,134240649,385,*,385,21,0.587012987,0.63362069,0.054545455,5.57E-11,CpGisland,TRUE,U3,Pr-B
1383,cg14568069,-0.00000885,0.00000734,-1.205111637,0.229079343,loss,ns,0.000000647,0.0000125,0.05189839,0.958643083,pos,ns,-0.006352467,0.003653597,-1.738688663,0.083082334,neg,ns,1.080491312,0.000258964,0.000125647,2.061049607,0.04013207,pos,ns,0.799521714,Gm11847,Gm11847_Intergenic_downstream,4,12516646,12516695,12516646,12516647,50,+,CGGAAATCTTCCAAGTTGGCAGCTTTAGTGTCTACTGCCATTAATCTTCA,Distal Intergenic,4,12232833,12233951,1119,1,Gm11847-201,283813,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,8,545592,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26157,cg09595108,0.00000215,0.0000123,0.175290827,0.860965557,gain,ns,0.00000108,0.0000208,0.051822474,0.958703525,pos,ns,0.037922183,0.006103254,6.213436851,1.67E-09,pos,ns,8.777788955,-0.001500416,0.00020989,-7.148567941,6.32E-12,neg,yes,0.212768298,Lmo4,Lmo4_Exon,3,144199088,144199137,144199088,144199089,50,+,CGGACACGTCATTCGGAGCAGATCTAAGCCAGAGACCAGATCTCATTAGA,"Exon (Gm43445-201/Gm43445-201, exon 1 of 1)",3,144188530,144202396,13867,2,Lmo4-203,3259,Lmo4-203;Lmo4-201;Lmo4-202;Lmo4-207;Lmo4-206;Lmo4-208;Lmo4-205;Lmo4-204,Lmo4;Lmo4;Lmo4;Lmo4;Lmo4;Lmo4;Lmo4;Lmo4,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,18,54,16911,ENSMUSG00000028266,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24031,cg01826959,0.0000287,0.00000297,9.684006642,1.50E-19,gain,yes,0.000000261,0.00000504,0.051775467,0.95874095,pos,ns,0.004522771,0.001477205,3.061708697,0.002393493,pos,ns,2.620967795,-0.0000803,0.0000508,-1.580476245,0.115017591,neg,ns,0.061650606,Srgap1,Srgap1_Exon,10,122047134,122047183,122047182,122047183,50,-,TTGACTTTCATACTCGGCTATGATCTCTTTGTCCTTCTTGAATCGGCTCG,Promoter (<=1kb),10,121780991,122047308,266318,2,Srgap1-201,125,Srgap1-201;Srgap1-202;Srgap1-205,Srgap1;Srgap1;Srgap1,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,117600,ENSMUSG00000020121,conserved gene but different region,10,122047103,122047922,820,*,820,107,0.731707317,0.975767079,0.130487805,5.73E-95,CpGisland,TRUE,NA,NRS
8183,cg08701899,0.0000128,0.00000333,3.850268553,0.000143338,gain,ns,0.000000292,0.00000566,0.051677904,0.958818627,pos,ns,0.007177729,0.00165724,4.331133688,0.0000201,pos,ns,4.697729133,-0.000177819,0.000057,-3.120048898,0.001978282,neg,ns,0.062757803,Pax2,Pax2_Intron,19,44834658,44834707,44834658,44834659,50,+,CGGTTAGGGATCACTGTAAACAGTCTGGGGTCATCACACAGGAGAAAGGG,"Intron (Pax2-203/Pax2, intron 8 of 9)",19,44756045,44837851,81807,1,Pax2-203,78613,Pax2-203;Pax2-201,Pax2;Pax2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,35,166,18504,ENSMUSG00000004231,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
14369,cg10062065,-0.0000129,0.00000398,-3.231546754,0.001363629,loss,ns,-0.000000349,0.00000677,-0.051591773,0.958887202,neg,ns,0.000523125,0.001982841,0.263825811,0.792089436,pos,ns,0.101225779,-0.0000565,0.0000682,-0.828745768,0.407885904,neg,ns,0.946939631,Speg,Speg_Exon,1,75384034,75384083,75384034,75384035,50,-,CGAAGTTTTCCGCTCCTGCAGAAAGCAAAGTTACGGTAGGAAACTGGCTC,"Exon (Speg-214/Speg, exon 3 of 6)",1,75375297,75432320,57024,1,Speg-201,8737,Speg-201;Speg-214;Speg-205;Speg-215;Speg-208;Speg-213;Speg-207;Speg-210;Speg-209;Speg-211,Speg;Speg;Speg;Speg;Speg;Speg;Speg;Speg;Speg;Speg,0;0;0;0;0;0;0;0;-1429;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,9,11790,ENSMUSG00000026207,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
27375,cg09011860,-0.00000559,0.00000277,-2.019259351,0.044320624,loss,ns,-0.000000242,0.0000047,-0.051496962,0.958962689,neg,ns,-0.001033144,0.001377974,-0.749755811,0.453970392,neg,ns,0.342972471,-0.0000217,0.0000474,-0.458454377,0.646947262,neg,ns,0.94342048,Zmynd8,Zmynd8_Exon,2,165846171,165846220,165846219,165846220,50,+,TACAACATCAACAGGGTCTGTGGTGAGTGGCTGCTTCATATAGTAAAACG,"Exon (Zmynd8-205/Zmynd8, exon 3 of 22)",2,165784152,165858173,74022,2,Zmynd8-205,11953,Zmynd8-205;Zmynd8-221;Zmynd8-203;Zmynd8-220;Zmynd8-201;Zmynd8-206;Zmynd8-218;Zmynd8-202;Zmynd8-219;Zmynd8-204;Zmynd8-215;Zmynd8-209;Zmynd8-211;Zmynd8-210,Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8;Zmynd8,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,12,228880,ENSMUSG00000039671,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16641,cg03050127,0.0000285,0.0000175,1.629287237,0.104267928,gain,ns,0.00000153,0.0000298,0.051474679,0.958980431,pos,ns,0.012504558,0.008719941,1.434018723,0.152574825,pos,ns,0.816517119,-0.000397901,0.000299878,-1.326877466,0.185525738,neg,ns,0.152271556,Bcas3,Bcas3_Intron,11,85775810,85775859,85775858,85775859,50,-,GCTGATTACAGTCCCAGATGTCATTGCATACATTACCCTGCTCTATAACG,"Intron (Bcas3-205/Bcas3, intron 24 of 27)",11,85353167,85826058,472892,1,Bcas3-205,422643,Bcas3-205;Bcas3-206;Bcas3-201;Bcas3-202;Bcas3-216;Bcas3-212;Bcas3-203;Bcas3-207,Bcas3;Bcas3;Bcas3;Bcas3;Bcas3;Bcas3;Bcas3;Bcas3,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,24,192197,ENSMUSG00000059439,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
24288,cg04197789,-0.0000197,0.0000095,-2.070002131,0.039280044,loss,ns,0.000000827,0.0000161,0.051222209,0.959181444,pos,ns,0.000445351,0.0047287,0.094180511,0.925026609,pos,ns,0.033845774,-0.000217955,0.00016262,-1.340274287,0.181137649,neg,ns,0.916514352,Pou3f1,Pou3f1_Intron,4,124480613,124480662,124480613,124480614,50,+,CGCTGCATTCTCTGCTTTAAAATGTGAAATTACCTCATTGTGTCTCTGAA,"Intron (1700057H15Rik-202/1700057H15Rik-202, intron 2 of 3)",4,124656807,124660655,3849,1,Pou3f1-201,-176145,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,43,85,18991,ENSMUSG00000090125,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4806,cg15013603,-0.0000275,0.00000475,-5.793054882,0.000000017,loss,yes,0.000000413,0.00000807,0.051221981,0.959181625,pos,ns,-0.002922261,0.002362881,-1.236736527,0.217121023,neg,ns,0.663298124,-0.0000552,0.0000813,-0.679350602,0.497422661,neg,ns,0.946226751,Prkg1,Prkg1_Exon,19,30624705,30624754,30624753,30624754,50,-,CAACTCCAAGGGTATCAATGATGTTGAAATCAGACAGCTTCAGGTTGGCG,"Exon (Prkg1-201/Prkg1, exon 10 of 18)",19,30564489,31765033,1200545,2,Prkg1-201,1140279,Prkg1-201;Prkg1-208;Prkg1-202;Prkg1-205,Prkg1;Prkg1;Prkg1;Prkg1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,13,19091,ENSMUSG00000052920,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26385,cg13342658,0.0000614,0.00000648,9.473110473,7.26E-19,gain,yes,0.000000562,0.000011,0.05103896,0.959327346,pos,ns,0.00841971,0.003224925,2.610823137,0.009471477,pos,ns,2.023582272,-0.0000699,0.000110905,-0.629943453,0.529195611,neg,ns,0.095845783,Nkx2-2,Nkx2-2_Exon,2,147188286,147188335,147188286,147188287,50,-,CGATTGCTAAGCTGCGGACAATGAGCGAAATGTAGACAAATGTCCCGCTC,"Exon (6430503K07Rik-201/6430503K07Rik-201, exon 3 of 3)",2,147186305,147194243,7939,2,Nkx2-2-202,5908,Nkx2-2-203;Nkx2-2-201;Nkx2-2-202;Nkx2-2-204,Nkx2-2;Nkx2-2;Nkx2-2;Nkx2-2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,15,30,18088,ENSMUSG00000027434,conserved gene but different region,2,147188041,147188404,364,*,364,26,0.585164835,0.836633663,0.071428571,2.81E-16,CpGisland,TRUE,U13,Hc-P
24426,cg24383718,-0.000000163,0.00000323,-0.050549321,0.959717202,loss,ns,-0.00000028,0.00000549,-0.050952168,0.95939645,neg,ns,-0.004506551,0.001607097,-2.804155796,0.005363145,neg,ns,2.270580433,0.0000541,0.0000553,0.978793713,0.328445137,pos,ns,0.92374484,D430042O09Rik,D430042O09Rik_Intron,7,125766743,125766792,125766791,125766792,50,+,TCCTCAGCCTTGTAATACTTGGGTGGACAGCGGCCTAATCAACAGAGCCG,"Intron (D430042O09Rik-203/D430042O09Rik, intron 4 of 26)",7,125707888,125874548,166661,1,D430042O09Rik-203,58855,D430042O09Rik-203;D430042O09Rik-201;D430042O09Rik-205,D430042O09Rik;D430042O09Rik;D430042O09Rik,0;0;58752,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,233865,ENSMUSG00000032743,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21339,cg19245122,-0.0000362,0.00000754,-4.807692975,0.00000239,loss,ns,-0.000000652,0.0000128,-0.050925055,0.959418037,neg,ns,-0.003546841,0.003751667,-0.945403936,0.34518898,neg,ns,0.461943078,-0.000210849,0.00012902,-1.634243564,0.10322279,neg,ns,0.837106474,Gm17052,Gm17052_Intergenic_downstream,12,107421477,107421526,107421477,107421478,50,-,CGAGCTAAAAATATTTGAGAGGCAATAATTTGCCTTAATGGCATCCACAC,Downstream (2-3kb),12,107419141,107419429,289,1,Gm17052-201,2385,Gm17052-201,Gm17052,2336,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,1,1,100417962,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5272,cg04437312,-0.00000121,0.00000184,-0.659496261,0.510066771,loss,ns,0.000000158,0.00000312,0.050801763,0.959516203,pos,ns,0.001304008,0.000913364,1.427697521,0.154385519,pos,ns,0.811393438,-0.0000292,0.0000314,-0.928995767,0.353614074,neg,ns,0.966345431,Ralgps1,Ralgps1_Exon,2,33276168,33276217,33276216,33276217,50,+,CTGAGGATTTCTGCCCTTATTTTTAAAGTCTGTGCTGTTAGAATTTCTCG,"Exon (Ralgps1-205/Ralgps1, exon 6 of 18)",2,33133417,33371429,238013,2,Ralgps1-205,95212,Ralgps1-205;Ralgps1-201;Ralgps1-204;Ralgps1-202;Ralgps1-203,Ralgps1;Ralgps1;Ralgps1;Ralgps1;Ralgps1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,241308,ENSMUSG00000038831,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6577,cg16309013,0.0000114,0.00000227,5.012560712,0.000000905,gain,yes,-0.000000195,0.00000385,-0.050702112,0.959595547,neg,ns,0.002832647,0.001129376,2.508151773,0.01264703,pos,ns,1.898011436,-0.000047,0.0000388,-1.208975786,0.227593431,neg,ns,0.031804038,Zfp536,Zfp536_Exon,7,37773239,37773288,37773287,37773288,50,-,TATTAAAATCTATCTATTCTCCAAGAGCTACATTCTGATTGTCAGACTCG,Promoter (<=1kb),7,37569629,37773641,204013,2,Zfp536-208,353,Zfp536-202;Zfp536-201;Zfp536-203;Zfp536-206;Zfp536-209;Zfp536-208;Zfp536-205;Zfp536-207;Zfp536-210,Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536,0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,13,112,243937,ENSMUSG00000043456,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
16733,cg05587638,0.0000247,0.00000886,2.783239023,0.005712238,gain,ns,0.00000076,0.0000151,0.050453599,0.959793418,pos,ns,0.002465973,0.004411575,0.558978015,0.576580295,pos,ns,0.239140204,-0.0000508,0.000151714,-0.33489738,0.737928989,neg,ns,0.779174757,Gm48101,Gm48101_Intergenic_upstream,12,86331258,86331307,86331306,86331307,50,+,CCTGCCATCTATCTCTGAGATTATCTTCCTGATTGAAAACTACTCATCCG,Distal Intergenic,12,86347977,86348097,121,1,Gm48101-201,-16670,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,4,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13197,cg15048337,-0.000000917,0.00000163,-0.56372987,0.573345551,loss,ns,-0.000000139,0.00000276,-0.050278806,0.959932593,neg,ns,0.001027464,0.000809671,1.268990118,0.205396551,pos,ns,0.687406853,-0.0000611,0.0000278,-2.192960603,0.029052924,neg,ns,0.960779622,Foxb1,Foxb1_Intergenic_downstream,9,69735124,69735173,69735124,69735125,50,+,CGCATACTAATTACCCTGGATGGGGCACCACTTTAATGAATTCTTTTAAT,Distal Intergenic,9,69757710,69760940,3231,2,Foxb1-201,25767,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,21,64290,ENSMUSG00000059246,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26429,cg01673863,-0.0000938,0.0000138,-6.795239746,5.54E-11,loss,yes,-0.00000118,0.0000234,-0.050152502,0.96003316,neg,ns,-0.02245726,0.006866912,-3.270357789,0.00119505,neg,ns,2.922613925,0.000499375,0.000236153,2.114628694,0.035259508,pos,ns,0.818982395,Gm43575,Gm43575_Intergenic_upstream,3,147930744,147930793,147930744,147930745,50,+,CGATAACAGGACAGTTTTGTAAACCACTTAAGGCTGTGATAAAATCCTAC,Distal Intergenic,3,148653060,148653575,516,1,Gm43575-201,-722267,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,3,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6409,cg20879576,0.00000869,0.000004,2.175542629,0.030344687,gain,ns,0.00000034,0.00000679,0.050138246,0.960044511,pos,ns,0.004381693,0.001989172,2.202772424,0.028346408,pos,ns,1.54750196,-0.000155723,0.0000684,-2.27640806,0.023503166,neg,ns,0.082364186,Pknox2,Pknox2_Exon,9,37147122,37147171,37147170,37147171,50,+,TCTGGCTTGGGGACTGGAATAAAACACACGCGCTCTGAGGCAGCCGCCCG,Promoter (<=1kb),9,36890982,37147407,256426,2,Pknox2-201,236,Pknox2-201;Pknox2-202;Pknox2-209;Pknox2-212;Pknox2-211;Pknox2-213;Pknox2-214,Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2,0;0;0;0;0;0;-1307,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,47,208076,ENSMUSG00000035934,conserved gene but different region,9,37147150,37147210,61,*,61,11,0.803278689,1.156896552,0.180327869,9.04E-12,CpGisland,TRUE,U3,Pr-B
22054,cg23595173,-0.0000229,0.00000684,-3.35022194,0.000907265,loss,ns,0.000000582,0.0000116,0.050071836,0.96009739,pos,ns,-0.004258506,0.003403575,-1.251186128,0.211809976,neg,ns,0.67405359,0.0000563,0.000117049,0.480722702,0.63105268,pos,ns,0.837076437,Plk2,Plk2_Exon,13,110399463,110399512,110399463,110399464,50,+,CGGTGCTGAAATACTTTTCTCATTACATGGAGGAGAACCTCATGGATGTA,"Exon (Plk2-201/Plk2, exon 12 of 14)",13,110395046,110400844,5799,1,Plk2-201,4417,Plk2-201;Plk2-203;Plk2-202;Plk2-205;Plk2-204,Plk2;Plk2;Plk2;Plk2;Plk2,0;4415;4415;3451;1666,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,2,20620,ENSMUSG00000021701,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9304,cg10497415,-0.00000409,0.00000218,-1.881642175,0.060821427,loss,ns,0.000000185,0.0000037,0.049931578,0.960209069,pos,ns,-0.001594743,0.001083126,-1.47235255,0.141940208,neg,ns,0.847894563,0.000000692,0.0000372,0.018573987,0.985192904,pos,ns,0.040825894,Nr4a3,Nr4a3_fiveUTR,4,48045118,48045167,48045166,48045167,50,+,GCACTCTATGGAGAGGCCGCTAGGGCTCCTGTGGCATAAATGACGTGCCG,Promoter (<=1kb),4,48045153,48086445,41293,1,Nr4a3-201,0,Nr4a3-201;Nr4a3-204;Nr4a3-203,Nr4a3;Nr4a3;Nr4a3,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,20,18124,ENSMUSG00000028341,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
6290,cg16356803,0.0000432,0.00000567,7.615671554,3.20E-13,gain,yes,-0.000000481,0.00000963,-0.049903695,0.96023127,neg,ns,0.002754462,0.002822455,0.975909979,0.329870001,pos,ns,0.481657179,0.0000148,0.0000971,0.152765423,0.87868265,pos,ns,0.030496784,Nrn1,Nrn1_fiveUTR,13,36734270,36734319,36734318,36734319,50,+,GCCGTTCAACTTAAGTCCCATCCTACGTTTAGTCAAACCATTTGCGACCG,Promoter (<=1kb),13,36725625,36734477,8853,2,Nrn1-201,158,Nrn1-204;Nrn1-201;Nrn1-203;Nrn1-202;Nrn1-205,Nrn1;Nrn1;Nrn1;Nrn1;Nrn1,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,8,9,68404,ENSMUSG00000039114,conserved gene and region,13,36734112,36734395,284,*,284,18,0.538732394,0.874444064,0.063380282,1.46E-10,CpGisland,TRUE,U1,Pr-A
8211,cg11475056,-0.0000088,0.00000336,-2.619259652,0.009245422,loss,ns,0.000000284,0.00000571,0.049848962,0.960274851,pos,ns,-0.001322013,0.001671688,-0.790824959,0.429650735,neg,ns,0.36688444,0.000117341,0.0000575,2.041090943,0.042088416,pos,ns,0.95092401,Zcchc7,Zcchc7_Intron,4,44852064,44852113,44852112,44852113,50,-,GTTCAGAGTGACGGGCCCACAGGCAGGCTGGCCTTTTATGCTTGCCGACG,"Intron (Zcchc7-203/Zcchc7, intron 2 of 8)",4,44756568,44932203,175636,1,Zcchc7-203,95496,Zcchc7-203;Zcchc7-207;Zcchc7-205;Zcchc7-201,Zcchc7;Zcchc7;Zcchc7;Zcchc7,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,27,27,319885,ENSMUSG00000035649,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
17676,cg13093341,0.0000652,0.00000629,10.36185811,8.46E-22,gain,yes,-0.000000533,0.0000107,-0.049835796,0.960285335,neg,ns,0.010239505,0.003132107,3.26920682,0.001199758,pos,ns,2.920906475,-0.000135332,0.000107713,-1.256410762,0.209913041,neg,ns,0.105969137,Elavl2,Elavl2_Intron,4,91375158,91375207,91375206,91375207,50,-,CTCCAAGGATCTTATTTACGCTTTTCTGAACAAAGGGAATCTCATATCCG,"Intron (Elavl2-208/Elavl2, intron 1 of 7)",4,91250763,91376463,125701,2,Elavl2-208,1256,Elavl2-204;Elavl2-201;Elavl2-207;Elavl2-208;Elavl2-202;Elavl2-209;Elavl2-203;Elavl2-205;Elavl2-215;Elavl2-212;Elavl2-214,Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2;Elavl2,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,31,15569,ENSMUSG00000008489,conserved gene and region,4,91374599,91375226,628,*,628,45,0.590764331,0.848954578,0.071656051,9.10E-28,CpGisland,TRUE,NA,NRS
25702,cg05186581,-0.00000428,0.00000156,-2.745674441,0.006391256,loss,ns,-0.000000132,0.00000265,-0.049717034,0.9603799,neg,ns,0.001460377,0.000776701,1.880230586,0.061014151,pos,ns,1.214569429,-0.0000455,0.0000267,-1.70364251,0.089450042,neg,ns,0.049822805,Metap1,Metap1_Exon,3,138489287,138489336,138489335,138489336,50,-,CCAGCTTGATGCAAGTGGGACACTGGAGCTTGGCCTCACTGCTGCAGCCG,Promoter (<=1kb),3,138458956,138489515,30560,2,Metap1-201,179,Metap1-201;Metap1-203;Metap1-204,Metap1;Metap1;Metap1,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,75624,ENSMUSG00000005813,conserved gene and region,3,138489323,138489866,544,*,544,61,0.716911765,0.882928906,0.112132353,8.28E-50,CpGisland,TRUE,U1,Pr-A
20662,cg00197325,0.00000181,0.00000191,0.944658241,0.345569059,gain,ns,0.000000162,0.00000325,0.049681186,0.960408443,pos,ns,-0.000232562,0.000953046,-0.24402007,0.807376693,neg,ns,0.092923792,0.000000914,0.0000328,0.027880504,0.977775398,pos,ns,0.94330896,Pou4f1,Pou4f1_Intron,14,104389696,104389745,104389744,104389745,50,-,TATGAGTTGCCATTTCTGCATAGTAGCAGATTAAATTTATTCACCTTACG,"Intron (D130079A08Rik-202/D130079A08Rik-202, intron 1 of 4)",14,104463973,104465365,1393,2,Pou4f1-202,75669,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,31,18996,ENSMUSG00000048349,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18157,cg08675446,0.0000258,0.0000034,7.590717119,3.76E-13,gain,yes,-0.000000286,0.00000578,-0.049569119,0.960497677,neg,ns,0.005552512,0.001692708,3.280254048,0.001155275,pos,ns,2.937314773,-0.000073,0.0000582,-1.25440203,0.210640894,neg,ns,0.085336445,Hsd17b12,Hsd17b12_Intron,2,94243816,94243865,94243864,94243865,50,+,ACTAGAGCCATGACGCAGCCAGCGCGCATTACTCACTTTTTGCAGTCACG,"Intron (Mir670hg-205/Mir670hg-205, intron 2 of 5)",2,94032689,94157964,125276,2,Hsd17b12-201,-85852,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,14,19,56348,ENSMUSG00000027195,conserved gene but different region,2,94243768,94243904,137,*,137,10,0.525547445,1.064491065,0.072992701,0.00000123,CpGisland,TRUE,U13,Hc-P
24416,cg12302691,-0.000000689,0.0000142,-0.048717093,0.961176126,loss,ns,0.00000119,0.000024,0.049547814,0.960514642,pos,ns,-0.002902804,0.007043338,-0.412134721,0.680525523,neg,ns,0.167155582,0.0000221,0.00024222,0.091300295,0.927312951,pos,ns,0.39849946,Grik3,Grik3_Intron,4,125535290,125535339,125535338,125535339,50,-,AAAGCGCGGGTGTTTCATTCAGCTTAACTGAAAAGGCCTTTAAATCACCG,"Intron (Grik3-201/Grik3, intron 1 of 15)",4,125490700,125714173,223474,1,Grik3-201,44590,Grik3-201,Grik3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,14,18,14807,ENSMUSG00000001985,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7059,cg24670086,0.000102626,0.00000694,14.79104882,7.94E-38,gain,yes,-0.000000584,0.0000118,-0.04950787,0.960546448,neg,ns,0.011414514,0.0034533,3.305393143,0.001059696,pos,ns,2.974818683,0.000103357,0.000118759,0.870307073,0.384806024,pos,ns,0.133243267,Tfap2a,Tfap2a_Exon,13,40728694,40728743,40728742,40728743,50,+,GGGGCGCTCGTGTAGGGAGATTGACCTACAGTGCCCAGCTGGGGCAACCG,"Exon (Tfap2a-201/Tfap2a, exon 2 of 7)",13,40715302,40730443,15142,2,Tfap2a-201,1700,Tfap2a-201;Tfap2a-202;Tfap2a-205;Tfap2a-203;Tfap2a-209;Tfap2a-208;Tfap2a-206;Tfap2a-204;Tfap2a-207,Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a;Tfap2a,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,13,57,21418,ENSMUSG00000021359,mapped to different genes,13,40728742,40728818,77,*,77,8,0.61038961,1.241935484,0.103896104,0.00000163,CpGisland,TRUE,U13,Hc-P
7341,cg25128794,-0.000012,0.00000345,-3.468089293,0.000598312,loss,ns,0.00000029,0.00000586,0.04948393,0.96056551,pos,ns,-0.001347982,0.001717346,-0.784921162,0.433099222,neg,ns,0.363412596,-0.00000844,0.0000591,-0.142846295,0.886504375,neg,ns,0.927366224,Rbm27,Rbm27_threeUTR,18,42340319,42340368,42340319,42340320,50,-,CGTGATAGAGGGAACAAAGGATTTATATATTTTTTGTACAAAGTTTTTTC,3' UTR,18,42275353,42341542,66190,1,Rbm27-201,64966,Rbm27-201;Rbm27-202;Rbm27-203;Rbm27-205,Rbm27;Rbm27;Rbm27;Rbm27,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,10,225432,ENSMUSG00000024491,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2710,cg15912797,-0.0000249,0.000011,-2.2667119,0.024096581,loss,ns,-0.000000923,0.0000187,-0.049370459,0.960655863,neg,ns,-0.005265088,0.00547558,-0.961557964,0.337021104,neg,ns,0.472342902,-0.000233528,0.000188305,-1.240160666,0.215853837,neg,ns,0.053933157,Kat6b,Kat6b_fiveUTR,14,21500865,21500914,21500913,21500914,50,-,ATGAGACTCCATTGGGCTGTAATCAGTGTCATGTCGGATTCATGTCAACG,Promoter (<=1kb),14,21500885,21520304,19420,1,Kat6b-212,0,Kat6b-209;Kat6b-211;Kat6b-206;Kat6b-204;Kat6b-201;Kat6b-207;Kat6b-202;Kat6b-208;Kat6b-212;Kat6b-210,Kat6b;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b;Kat6b,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,7,21,54169,ENSMUSG00000021767,conserved gene and region,14,21500899,21501345,447,*,447,45,0.727069351,0.780983072,0.100671141,1.37E-34,CpGisland,TRUE,U1,Pr-A
17959,cg06283779,0.000000106,0.00000411,0.025739569,0.979481624,gain,ns,0.000000345,0.00000698,0.049368519,0.960657408,pos,ns,0.000480774,0.00204516,0.235078848,0.814302742,pos,ns,0.089214103,-0.000172202,0.0000703,-2.448380171,0.014903928,neg,ns,0.915840396,Mmp2,Mmp2_Exon,8,92836946,92836995,92836994,92836995,50,-,TGTCTTCCCCTTCACTTTCCTGGGCAACAAATATGAGAGCTGCACCAGCG,"Exon (Mmp2-201/Mmp2, exon 7 of 13)",8,92827291,92853420,26130,1,Mmp2-201,9655,Mmp2-201;Mmp2-204,Mmp2;Mmp2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,4,17390,ENSMUSG00000031740,conserved gene and region,8,92836994,92837053,60,*,60,7,0.616666667,1.228070175,0.116666667,0.00000466,CpGisland,TRUE,U11,Tr-P
6412,cg14096331,0.000000326,0.00000189,0.172301236,0.863313144,gain,ns,0.000000159,0.00000321,0.049361954,0.960662636,pos,ns,-0.000901322,0.000941735,-0.957086813,0.339269233,neg,ns,0.469455524,0.0000197,0.0000324,0.609281587,0.542784074,pos,ns,0.038323146,Pknox2,Pknox2_fiveUTR,9,37147209,37147258,37147209,37147210,50,+,CGTCTCTGACATGGAAATGAATGACAGCTTACCTGATGCCAATCTTCATC,Promoter (<=1kb),9,36890982,37147407,256426,2,Pknox2-201,149,Pknox2-201;Pknox2-202;Pknox2-209;Pknox2-212;Pknox2-211;Pknox2-213;Pknox2-214,Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2;Pknox2,0;0;0;0;0;0;-1394,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,47,208076,ENSMUSG00000035934,conserved gene but different region,9,37147150,37147210,61,*,61,11,0.803278689,1.156896552,0.180327869,9.04E-12,CpGisland,TRUE,U3,Pr-B
19472,cg18272316,-0.00000858,0.00000947,-0.905896709,0.365694077,loss,ns,0.000000794,0.0000161,0.049336704,0.960682741,pos,ns,-0.014970853,0.004714889,-3.175229303,0.001647716,neg,ns,2.783117538,0.000384323,0.000162145,2.370245615,0.018387972,pos,ns,0.514222395,Foxp1,Foxp1_Intron,6,99389220,99389269,99389220,99389221,50,+,CGCCTTTCAAGTCCAAACAGGAAAGGGGAGAAAAGAGAGTGAGATGGCAG,"Intron (Foxp1-204/Foxp1, intron 1 of 18)",6,98925342,99435345,510004,2,Foxp1-204,46076,Foxp1-204;Foxp1-220;Foxp1-221;Foxp1-222;Foxp1-224;Foxp1-227;Foxp1-219;Gm20696-201,Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Foxp1;Gm20696,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,64,87,108655,ENSMUSG00000030067,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U5,En-Sd
631,cg24191230,-0.00000106,0.000000832,-1.272198159,0.204256178,loss,ns,6.96E-08,0.00000141,0.049245428,0.960755422,pos,ns,-0.000291804,0.000414256,-0.704403954,0.48171007,neg,ns,0.317214274,-0.00000894,0.0000142,-0.627679167,0.530676213,neg,ns,0.01794596,Mark2,Mark2_fiveUTR,19,7341176,7341225,7341224,7341225,50,+,TGTCCCTCTCGTTCAGCGTGGGTAGGGGGGTCCGAGCGCTGGACATGGCG,Promoter (<=1kb),19,7276759,7341192,64434,2,Mark2-221,0,Mark2-202;Mark2-206;Mark2-221;Mark2-209;Mark2-203;Mark2-207;Mark2-215;Mark2-220;Mark2-216;Mark2-210;Mark2-213,Mark2;Mark2;Mark2;Mark2;Mark2;Mark2;Mark2;Mark2;Mark2;Mark2;Mark2,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,10,13728,ENSMUSG00000024969,conserved gene and region,19,7341174,7341228,55,*,55,7,0.690909091,1.115942029,0.127272727,0.00000255,CpGisland,TRUE,U1,Pr-A
25536,cg15933611,0.00000999,0.00000254,3.933499752,0.000103353,gain,ns,-0.000000212,0.00000432,-0.049175018,0.960811487,neg,ns,-0.001763374,0.001264294,-1.394749865,0.164089869,neg,ns,0.784918232,0.0000225,0.0000435,0.516856868,0.605624618,pos,ns,0.913530326,Ebf3,Ebf3_Exon,7,137199208,137199257,137199256,137199257,50,+,AATTGGACTGCTGGGGAGTACTGCTGGGGACGTAGCCTCGCGGGGACACG,"Exon (Ebf3-204/Ebf3, exon 14 of 16)",7,137193673,137314445,120773,2,Ebf3-204,115188,Ebf3-204;Ebf3-201;Ebf3-202;Ebf3-203;Ebf3-208;Ebf3-205,Ebf3;Ebf3;Ebf3;Ebf3;Ebf3;Ebf3,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,84,13593,ENSMUSG00000010476,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22336,cg04270283,0.00000847,0.00000735,1.152182648,0.250133776,gain,ns,0.000000614,0.0000125,0.049158829,0.960824378,pos,ns,0.010025122,0.00365923,2.739680515,0.006506114,pos,ns,2.186678349,-0.000393318,0.000125841,-3.125527127,0.001942919,neg,ns,0.617860823,Brpf1,Brpf1_Exon,6,113317655,113317704,113317655,113317656,50,-,CGAGCCGGTCCCTCTGTCTGAGGTAACCGAATTGGACGAAGTAAGAATCC,"Exon (Brpf1-204/Brpf1, exon 6 of 14)",6,113307137,113324857,17721,1,Brpf1-204,10518,Brpf1-204;Brpf1-209;Brpf1-203;Brpf1-202;Brpf1-201;Brpf1-210;Brpf1-208;Brpf1-205;Brpf1-207;Brpf1-206,Brpf1;Brpf1;Brpf1;Brpf1;Brpf1;Brpf1;Brpf1;Brpf1;Brpf1;Brpf1,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,16,78783,ENSMUSG00000001632,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19602,cg26604061,-0.000000221,0.000001,-0.221198902,0.82508319,loss,ns,8.36E-08,0.0000017,0.049143138,0.960836872,pos,ns,0.000810166,0.000498146,1.626361997,0.104888724,pos,ns,0.979271198,-0.0000239,0.0000171,-1.39547126,0.163872556,neg,ns,0.972414356,Hnrnpdl,Hnrnpdl_threeUTR,5,100035618,100035667,100035666,100035667,50,+,GTTGGAAGAGACCATACCACAGGACAGCGTTTTCTGGTGTATGCCTTGCG,Promoter (<=1kb),5,100033577,100036068,2492,2,Hnrnpdl-203,401,Enoph1-202;Enoph1-201;Enoph1-203;Hnrnpdl-203;Hnrnpdl-202;Hnrnpdl-207;Hnrnpdl-201;Hnrnpdl-204;Hnrnpdl-205;Hnrnpdl-206,Enoph1;Enoph1;Enoph1;Hnrnpdl;Hnrnpdl;Hnrnpdl;Hnrnpdl;Hnrnpdl;Hnrnpdl;Hnrnpdl,0;0;0;0;0;0;0;0;0;1456,TRUE,FALSE,TRUE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,8,8,50926,ENSMUSG00000029328,conserved gene and region,5,100035645,100035745,101,*,101,9,0.613861386,0.945889698,0.089108911,0.000001,CpGisland,TRUE,U12,Tr-I
8441,cg07258523,0.000000849,0.00000148,0.573960982,0.566410402,gain,ns,-0.000000123,0.00000251,-0.04907641,0.960890007,neg,ns,-0.001124444,0.000736013,-1.527750226,0.127594224,neg,ns,0.894168984,0.0000388,0.0000253,1.533379182,0.126202347,pos,ns,0.044723264,Zeb2,Zeb2_Exon,2,45116665,45116714,45116665,45116666,50,-,CGTGCAGACTCGCAATCCAATCCATTCGGAGTTGAGCCTAGGATAGGAGG,Promoter (<=1kb),2,44983632,45117395,133764,2,Zeb2-212,681,Zeb2-212;Zeb2-213;Zeb2-202;Zeb2-215;Zeb2-203;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-207;Zeb2-205;Zeb2-223;Zeb2-204;Zeb2-206;Zeb2-230,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,21,158,24136,ENSMUSG00000026872,mapped to different genes,2,45116550,45116692,143,*,143,10,0.538461539,0.968834688,0.06993007,0.00000182,CpGisland,TRUE,NA,NRS
15115,cg02804413,-0.00000322,0.00000363,-0.886086798,0.376257596,loss,ns,-0.000000302,0.00000617,-0.048995181,0.960954688,neg,ns,-0.002890575,0.001806699,-1.599920437,0.110634842,neg,ns,0.956108082,-0.0000377,0.0000621,-0.606560253,0.544586719,neg,ns,0.936111587,Zfp827,Zfp827_threeUTR,8,79189934,79189983,79189982,79189983,50,+,CAGCTGCAAGCGCAAGGACAATCTCAACCTGCACAAGAAGCTGAAGCACG,3' UTR,8,79028437,79193743,165307,1,Zfp827-202,161497,Zfp827-202;Zfp827-203;Zfp827-209;Zfp827-206;Zfp827-205;Zfp827-207;Zfp827-204,Zfp827;Zfp827;Zfp827;Zfp827;Zfp827;Zfp827;Zfp827,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,12,28,622675,ENSMUSG00000071064,conserved gene and region,8,79189795,79190007,213,*,213,16,0.61971831,0.797192983,0.075117371,1.49E-10,CpGisland,TRUE,U11,Tr-P
14398,cg25658983,0.0000126,0.00000973,1.295638056,0.196064114,gain,ns,0.000000808,0.0000165,0.04892455,0.96101093,pos,ns,0.000503398,0.00484068,0.103993131,0.917242046,pos,ns,0.037516046,0.000263754,0.000166471,1.584385976,0.11412548,pos,ns,0.806792555,Siah3,Siah3_Promoter,14,75455745,75455794,75455793,75455794,50,-,GATAAATGCAATGTGCTGATCTATGGTAATGTTCAATAATACATTCTCCG,Promoter (<=1kb),14,75455982,75529708,73727,1,Siah3-201,-237,Siah3-201,Siah3,-188,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,4,4,380918,ENSMUSG00000091722,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
21747,cg17521119,0.0000738,0.00000824,8.950999261,3.31E-17,gain,yes,0.000000684,0.000014,0.048836616,0.96108095,pos,ns,0.008320449,0.004101638,2.028567578,0.043356901,pos,ns,1.362941769,-0.000307567,0.000141055,-2.18047717,0.029973789,neg,ns,0.604985712,Zfhx3,Zfhx3_Exon,8,108956379,108956428,108956427,108956428,50,-,AAAGGTGCAGTACAAGTTGGTCTGCCGCAAGTGCCAGGCGGGCTTCAGCG,"Exon (Zfhx3-204/Zfhx3, exon 16 of 16)",8,107942644,108961630,1018987,1,Zfhx3-204,1013735,Zfhx3-204;Zfhx3-201,Zfhx3;Zfhx3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,46,177,11906,ENSMUSG00000038872,conserved gene and region,8,108956404,108956473,70,*,70,8,0.7,0.942760943,0.114285714,0.000000774,CpGisland,TRUE,U10,Tr-S
13630,cg05219494,0.0000369,0.0000148,2.49633874,0.013067332,gain,ns,-0.00000122,0.0000251,-0.048816503,0.961096966,neg,ns,-0.001180022,0.007350149,-0.160543968,0.872557155,neg,ns,0.059206116,0.000200756,0.000252771,0.79422002,0.427674916,pos,ns,0.331885712,Dlx1,Dlx1_Intergenic_downstream,2,71538220,71538269,71538268,71538269,50,+,AATTGTCTTGCGCAAAAATTACAGTCCATATTAGGACATCTGAAATTGCG,Distal Intergenic,2,71530780,71532689,1910,1,Dlx1-206,7440,Dlx1-201;Dlx1-203,Dlx1;Dlx1,0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,9,36,13390,ENSMUSG00000041911,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
711,cg06718658,-0.0000353,0.00000729,-4.842479475,0.00000203,loss,ns,0.000000604,0.0000124,0.048768276,0.961135369,pos,ns,0.00063916,0.003630018,0.176076226,0.860349024,pos,ns,0.06532533,-0.0000992,0.000124836,-0.794974055,0.427236813,neg,ns,0.93621933,Car8,Car8_Exon,4,8221545,8221594,8221593,8221594,50,-,CTTACCTCCATGGGAAAAGCTTTGAAATTAACCGTGTGCTCAGAACCACG,"Exon (Car8-201/Car8, exon 3 of 9)",4,8143362,8239041,95680,2,Car8-201,17447,Car8-201,Car8,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,12319,ENSMUSG00000041261,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18511,cg05473648,-0.00000996,0.00000595,-1.673016253,0.095332883,loss,ns,-0.000000493,0.0000101,-0.04873851,0.961159071,neg,ns,-0.002857974,0.002963157,-0.964502914,0.335545631,neg,ns,0.474248411,-0.000116967,0.000101903,-1.147834379,0.251921956,neg,ns,0.908327588,Tenm4,Tenm4_Exon,7,96249414,96249463,96249414,96249415,50,-,CGAGGGACTGCTGTGTGTGAAATGGTAACTGCCCTCAAGGAGCTTACAAT,"Exon (Mir708-201/Mir708-201, exon 1 of 1)",7,96171246,96908569,737324,1,Tenm4-201,78168,Tenm4-201;Tenm4-211;Tenm4-208;Tenm4-204;Tenm4-209;Tenm4-203;Tenm4-202,Tenm4;Tenm4;Tenm4;Tenm4;Tenm4;Tenm4;Tenm4,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,17,26,23966,ENSMUSG00000048078,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19142,cg06001099,-0.0000073,0.00000337,-2.165039883,0.031147323,loss,ns,-0.000000279,0.00000573,-0.048633855,0.961242408,neg,ns,0.001040021,0.001679297,0.619319141,0.536161017,pos,ns,0.270704765,-0.000145899,0.0000578,-2.526348986,0.012023092,neg,ns,0.940827464,Cacnb3,Cacnb3_Exon,15,98643383,98643432,98643383,98643384,50,+,CGCCACCTGGAGGAGGACTATGCAGATGCCTACCAGGACCTGTACCAGCC,"Exon (Cacnb3-202/Cacnb3, exon 13 of 13)",15,98632376,98644529,12154,1,Cacnb3-202,11007,Cacnb3-203;Cacnb3-207;Cacnb3-202;Cacnb3-201;Cacnb3-206;Cacnb3-205;Ddx23-201;Ddx23-204;Ddx23-203,Cacnb3;Cacnb3;Cacnb3;Cacnb3;Cacnb3;Cacnb3;Ddx23;Ddx23;Ddx23,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,3,12297,ENSMUSG00000003352,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22644,cg15298634,-0.0000235,0.00000709,-3.316084515,0.00102132,loss,ns,-0.000000586,0.000012,-0.04859642,0.961272217,neg,ns,-0.004316953,0.003530158,-1.222878168,0.222304557,neg,ns,0.653051635,0.000149763,0.000121402,1.233613483,0.218281461,pos,ns,0.910677079,Sox6,Sox6_Exon,7,115550099,115550148,115550147,115550148,50,-,TTGATGGCATCTTTGCTCCAGGTGACACCTGCATGCTGGCCAGCTGAGCG,"Exon (Sox6-210/Sox6, exon 10 of 16)",7,115470872,116031047,560176,2,Sox6-210,480899,Sox6-210;Sox6-201;Sox6-202;Sox6-204;Sox6-205;Sox6-203;Sox6-212;Sox6-206;Sox6-209;Sox6-215;Sox6-214,Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,57,20679,ENSMUSG00000051910,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2945,cg15367924,-0.0000036,0.0000025,-1.440240108,0.150808625,loss,ns,0.000000206,0.00000425,0.048558944,0.961302059,pos,ns,0.000259605,0.001244552,0.208593486,0.834902585,pos,ns,0.078364194,0.0000297,0.0000428,0.693931264,0.488244975,pos,ns,0.939307221,Lrmda,Lrmda_Intron,14,22115057,22115106,22115105,22115106,50,+,TTCTTACTGTTACAAAACAGAAGACACTGGGAAATTGACAAGTCCAAGCG,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,95345,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206,Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24365,cg21731594,-0.00000124,0.0000022,-0.561420061,0.574916834,loss,ns,-0.000000182,0.00000374,-0.048536203,0.961320167,neg,ns,0.0000111,0.001095911,0.01009089,0.991955262,pos,ns,0.003507915,-0.0000237,0.0000377,-0.628261413,0.530295284,neg,ns,0.901316023,Zfp384,Zfp384_Exon,6,125025851,125025900,125025851,125025852,50,-,CGAAGGGAACTGCGGCACAGGAAATGGACAGAGCCTTGGGCTCATGGATT,"Exon (Zfp384-214/Zfp384, exon 7 of 12)",6,125009145,125036180,27036,1,Zfp384-210,16706,Zfp384-210;Zfp384-202;Zfp384-214;Zfp384-208;Zfp384-213;Zfp384-207;Zfp384-201;Zfp384-209;Zfp384-216;Zfp384-204;Zfp384-206;Zfp384-212;Zfp384-203;Zfp384-205;Zfp384-215;Zfp384-211,Zfp384;Zfp384;Zfp384;Zfp384;Zfp384;Zfp384;Zfp384;Zfp384;Zfp384;Zfp384;Zfp384;Zfp384;Zfp384;Zfp384;Zfp384;Zfp384,0;0;0;0;0;0;0;16138;16136;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,6,269800,ENSMUSG00000038346,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23522,cg26773072,0.00000234,0.00000176,1.329171029,0.184768935,gain,ns,0.000000144,0.00000298,0.048336383,0.961479285,pos,ns,0.002159758,0.000874407,2.469967822,0.01405067,pos,ns,1.852302963,-0.0000484,0.0000301,-1.609273336,0.108574422,neg,ns,0.960054855,Med13l,Med13l_Exon,5,118750900,118750949,118750948,118750949,50,-,ATTCAATACTTGAAGTCCATGGCATTTTCAGTGTACTGCCAGTGCAGGCG,"Exon (Med13l-201/Med13l, exon 23 of 31)",5,118560719,118765438,204720,1,Med13l-201,190181,Med13l-201;Med13l-202;Med13l-205;Med13l-206,Med13l;Med13l;Med13l;Med13l,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,16,76199,ENSMUSG00000018076,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10512,cg09789765,0.0000235,0.0000116,2.027541351,0.043462271,gain,ns,-0.000000947,0.0000197,-0.048056467,0.961702186,neg,ns,0.002429257,0.005773907,0.420730231,0.674243599,pos,ns,0.171183168,-0.000333599,0.000198564,-1.680053923,0.093954215,neg,ns,0.771405988,Npas3,Npas3_Intron,12,53948072,53948121,53948120,53948121,50,-,AATGACTTGATATCCATCAGTCCCCTAGTTCATCAAGCTGTTCAAACACG,"Intron (Npas3-204/Npas3, intron 5 of 10)",12,53248157,54069532,821376,1,Npas3-204,699915,Npas3-204;Npas3-201;Npas3-203,Npas3;Npas3;Npas3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,83,103,27386,ENSMUSG00000021010,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11665,cg16501079,0.0000491,0.00000931,5.273731357,0.000000251,gain,yes,0.000000759,0.0000158,0.047980215,0.961762907,pos,ns,0.000108334,0.004634514,0.023375541,0.981365754,pos,ns,0.008169101,-0.0000208,0.000159381,-0.130550048,0.896215935,neg,ns,0.394867611,Gm18161,Gm18161_Intergenic_downstream,19,59717925,59717974,59717925,59717926,50,-,CGGCGTGTCTGCTGCTGGTTAACAAGGAAATCCTATGTCAATTATCGCCA,Distal Intergenic,19,59540451,59540978,528,1,Gm18161-201,177523,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,8,100416590,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20940,cg13766913,-0.00000187,0.00000299,-0.625602467,0.532036008,loss,ns,0.000000244,0.00000509,0.04791168,0.961817483,pos,ns,-0.000566754,0.00149009,-0.380348805,0.703946987,neg,ns,0.152460045,0.0000117,0.0000512,0.227981057,0.819811265,pos,ns,0.934373524,Elp4,Elp4_Intron,2,105770011,105770060,105770059,105770060,50,-,CATTACTGATAATTAAGACAAGTAATATTTTCTTGACAGTAATGTGTCCG,"Intron (Elp4-202/Elp4, intron 9 of 9)",2,105701027,105904564,203538,2,Elp4-202,134504,Elp4-202;Elp4-201,Elp4;Elp4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,16,77766,ENSMUSG00000027167,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9748,cg16705409,-0.00000417,0.00000158,-2.649637357,0.008470988,loss,ns,-0.000000128,0.00000268,-0.047812355,0.961896578,neg,ns,-0.000630929,0.000783963,-0.80479388,0.421555425,neg,ns,0.375145317,0.0000207,0.000027,0.76788926,0.443137489,pos,ns,0.051112672,Nkapd1,Nkapd1_fiveUTR,9,50616729,50616778,50616729,50616730,50,+,CGACCCAGGAAGCCAAGGAGTCAGGGCTCAAAGGCAGCTCTGCAGCTTCA,Promoter (<=1kb),9,50605240,50617464,12225,2,Nkapd1-201,686,Nkapd1-201;Nkapd1-205;Nkapd1-202;Nkapd1-204;Nkapd1-203;Pih1d2-201;Pih1d2-202;Pih1d2-206;Pih1d2-204;Pih1d2-207;Pih1d2-205;Pih1d2-203,Nkapd1;Nkapd1;Nkapd1;Nkapd1;Nkapd1;Pih1d2;Pih1d2;Pih1d2;Pih1d2;Pih1d2;Pih1d2;Pih1d2,0;0;0;0;0;-543;-555;-559;-605;-743;-772;-1229,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,3,270156,ENSMUSG00000059820,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
10892,cg13574034,-0.00000658,0.00000531,-1.240423329,0.215756854,loss,ns,0.00000043,0.00000901,0.047676361,0.962004874,pos,ns,0.006320682,0.002640908,2.393374314,0.017288705,pos,ns,1.762237525,-0.000191466,0.0000908,-2.10818137,0.035817614,neg,ns,0.884138311,Pcbd2,Pcbd2_Intron,13,55750471,55750520,55750471,55750472,50,-,CGGAAACCAACCCATTTGTGACAAATTTAGTCCTTTCGTGTGAATCTTCT,"Intron (Pcbd2-201/Pcbd2, intron 2 of 3)",13,55727368,55776828,49461,1,Pcbd2-201,23103,Pcbd2-201;Pcbd2-202,Pcbd2;Pcbd2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,5,72562,ENSMUSG00000021496,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4352,cg15214658,-0.0000456,0.00000968,-4.708813118,0.00000376,loss,ns,0.000000783,0.0000164,0.047612989,0.962055339,pos,ns,-0.003969506,0.004817669,-0.823947478,0.410602861,neg,ns,0.386578029,-0.000173447,0.000165679,-1.046881517,0.295969783,neg,ns,0.893340927,Erc2,Erc2_threeUTR,14,28476273,28476322,28476273,28476274,50,-,CGCCTTATGAGAACATGGTGTGTGTCTCTGACAATGCGTGGCACATCTAA,3' UTR,14,27622428,28478535,856108,1,Erc2-205,853845,Erc2-205;Erc2-201;Erc2-208;Erc2-204;Erc2-214,Erc2;Erc2;Erc2;Erc2;Erc2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,threeUTR,1,17,238988,ENSMUSG00000040640,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8117,cg23698708,-0.0000104,0.0000034,-3.047502221,0.002506068,loss,ns,-0.000000275,0.00000578,-0.047577737,0.962083411,neg,ns,-0.001647737,0.00169385,-0.972776462,0.331422835,neg,ns,0.479617572,-0.000102437,0.0000583,-1.758528583,0.079644304,neg,ns,0.944390335,Ebf1,Ebf1_Intron,11,44753656,44753705,44753656,44753657,50,+,CGGGAATAGGAAATATTACTCATAACATAAAGTAGGGATTAATTATGCTA,"Intron (Ebf1-203/Ebf1, intron 6 of 15)",11,44617317,45004995,387679,1,Ebf1-203,136339,Ebf1-203;Ebf1-202;Ebf1-201,Ebf1;Ebf1;Ebf1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,80,13591,ENSMUSG00000057098,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
27229,cg16905926,-0.00000215,0.00000114,-1.887073315,0.060084636,loss,ns,9.22E-08,0.00000194,0.047558305,0.962098886,pos,ns,0.0000774,0.000567672,0.136383151,0.891606918,pos,ns,0.049826571,0.00000146,0.0000195,0.074667239,0.940527633,pos,ns,0.035169088,Zbtb37,Zbtb37_fiveUTR,1,161034760,161034809,161034808,161034809,50,-,TCAAGGAGCAGCACCTACCTCCGGGGGTGGAAATGGGCCGGAATGGGCCG,Promoter (<=1kb),1,161002922,161034849,31928,2,Zbtb37-203,40,Zbtb37-203;Zbtb37-204;Zbtb37-202;Zbtb37-206;Zbtb37-201;Zbtb37-205;Zbtb37-207,Zbtb37;Zbtb37;Zbtb37;Zbtb37;Zbtb37;Zbtb37;Zbtb37,0;0;0;-501;0;-476;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,2,240869,ENSMUSG00000043467,mapped to different genes,1,161034385,161034907,523,*,523,58,0.738049713,0.843712625,0.110898662,4.46E-47,CpGisland,TRUE,U1,Pr-A
27181,cg08406045,0.00001,0.00000337,2.963240566,0.003279937,gain,ns,-0.000000272,0.00000573,-0.047449542,0.962185498,neg,ns,0.001732024,0.001679304,1.031393993,0.303160089,pos,ns,0.518327974,-0.0000692,0.0000578,-1.197670219,0.23196037,neg,ns,0.014534912,Mafb,Mafb_Exon,2,160365734,160365783,160365782,160365783,50,-,TGTCGCTGGTGGAGCCCGCCTCCCTGAAGCCGGAGTTGGCGAGTTTCTCG,"Exon (Mafb-201/Mafb, exon 1 of 1)",2,160363703,160367065,3363,2,Mafb-201,1282,Mafb-201,Mafb,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,14,22,16658,ENSMUSG00000074622,conserved gene and region,2,160365737,160365821,85,*,85,9,0.670588235,0.942118227,0.105882353,0.000000223,CpGisland,TRUE,U3,Pr-B
25650,cg21384965,-0.00000124,0.00000114,-1.093974847,0.27481532,loss,ns,9.15E-08,0.00000193,0.047373416,0.96224612,pos,ns,-0.001001634,0.000566056,-1.769494575,0.077794451,neg,ns,1.109051379,0.000011,0.0000195,0.563871639,0.573249177,pos,ns,0.039234551,Eif4g3,Eif4g3_fiveUTR,4,137993939,137993988,137993939,137993940,50,-,CGCTTTGCCATGAGTTTACCGCAGAAACCGGCTCTGAAATCAGGCACAGC,Promoter (<=1kb),4,137993022,138105419,112398,1,Eif4g3-210,917,Eif4g3-210;Eif4g3-201;Eif4g3-204;Eif4g3-203;Eif4g3-202;Eif4g3-205;Eif4g3-206;Eif4g3-207;Eif4g3-215,Eif4g3;Eif4g3;Eif4g3;Eif4g3;Eif4g3;Eif4g3;Eif4g3;Eif4g3;Eif4g3,0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,10,230861,ENSMUSG00000028760,conserved gene but different region,4,137992842,137994345,1504,*,1504,165,0.691489362,0.925973604,0.109707447,7.33E-132,CpGisland,TRUE,U1,Pr-A
16699,cg20709200,0.0000294,0.00000532,5.524217158,7.02E-08,gain,yes,0.000000428,0.00000904,0.047356809,0.962259345,pos,ns,0.008999488,0.002648018,3.398574886,0.000765895,pos,ns,3.115830899,-0.0000833,0.0000911,-0.914365774,0.361235318,neg,ns,0.066803013,Prkce,Prkce_Exon,17,86168615,86168664,86168663,86168664,50,-,TTAAGATCAAAATCTGCGAGGCCGTGAGCTTGAAGCCCACAGCCTGGTCG,Promoter (<=1kb),17,86167785,86657919,490135,1,Prkce-202,830,Prkce-202;Prkce-204;Prkce-201,Prkce;Prkce;Prkce,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,7,18754,ENSMUSG00000045038,conserved gene and region,17,86168631,86168971,341,*,341,31,0.618768328,0.951485149,0.090909091,1.51E-22,CpGisland,TRUE,U3,Pr-B
8086,cg15109221,-0.0000146,0.00000464,-3.148752054,0.001799378,loss,ns,-0.000000372,0.00000789,-0.04712711,0.962442266,neg,ns,-0.002772837,0.002311431,-1.199619259,0.231203291,neg,ns,0.636005988,-0.0000888,0.0000795,-1.116981722,0.264867103,neg,ns,0.049619962,Jarid2,Jarid2_fiveUTR,13,44730774,44730823,44730822,44730823,50,-,GGGGGACTACAACTTCCAGAAGATCAAGGGGACCATTCTAAGGTGCCCCG,Promoter (<=1kb),13,44730774,44920108,189335,1,Jarid2-210,0,Jarid2-214;Jarid2-212;Jarid2-204;Jarid2-210;Jarid2-201;Jarid2-209;Jarid2-203;Jarid2-208;Jarid2-213;Jarid2-215;Jarid2-216;Jarid2-206;Jarid2-205;Jarid2-202,Jarid2;Jarid2;Jarid2;Jarid2;Jarid2;Jarid2;Jarid2;Jarid2;Jarid2;Jarid2;Jarid2;Jarid2;Jarid2;Jarid2,0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,8,21,16468,ENSMUSG00000038518,conserved gene but different region,13,44730822,44731224,403,*,403,37,0.70471464,0.814141414,0.091811414,5.67E-27,CpGisland,TRUE,U1,Pr-A
13099,cg00562438,0.00000194,0.00000387,0.502692534,0.615537384,gain,ns,0.000000309,0.00000657,0.047037554,0.962513585,pos,ns,-0.00217337,0.00192372,-1.129774882,0.259444506,neg,ns,0.585955521,-0.0000226,0.0000662,-0.341423709,0.733015938,neg,ns,0.867167882,Dnah2,Dnah2_Exon,11,69435246,69435295,69435246,69435247,50,+,CGGTCCTCCAGCTTATTGCTGCGGTGGCTTTTGTCAATGCTGAGAATAAA,"Exon (Dnah2-201/Dnah2, exon 71 of 85)",11,69420809,69544556,123748,2,Dnah2-201,109261,Dnah2-201;Dnah2-202,Dnah2;Dnah2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,10,327954,ENSMUSG00000005237,conserved gene and region,11,69435241,69435397,157,*,157,10,0.585987261,0.754807692,0.063694268,0.00000418,CpGisland,TRUE,U11,Tr-P
12636,cg22675399,-0.0000469,0.00000869,-5.40352944,0.000000131,loss,yes,0.000000693,0.0000148,0.046987241,0.962553651,pos,ns,-0.007858331,0.004323435,-1.817612684,0.070088586,neg,ns,1.154352703,0.000128353,0.000148683,0.86326942,0.388656742,pos,ns,0.87605156,Astn2,Astn2_Intron,4,66102251,66102300,66102299,66102300,50,-,TATCCAGTAACAAAGTTGGATACAAACTCCATCAGCAGAACTGTCAGGCG,"Intron (Astn2-202/Astn2, intron 3 of 21)",4,65380803,66404483,1023681,2,Astn2-202,302183,Astn2-202;Astn2-201,Astn2;Astn2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,7,56079,ENSMUSG00000028373,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22403,cg05879032,0.000023,0.00000462,4.967696922,0.00000112,gain,yes,0.000000369,0.00000785,0.046946412,0.962586166,pos,ns,0.003067645,0.00230045,1.333497423,0.183347617,pos,ns,0.736724731,0.000033,0.0000791,0.416779617,0.677128057,pos,ns,0.912928615,Copb1,Copb1_Exon,7,114234979,114235028,114235027,114235028,50,+,ATGTCTTCCTTGGTACTACAGTATTCTCCCAGGATCCATAATGCTCCTCG,"Exon (Copb1-201/Copb1, exon 12 of 22)",7,114215559,114254711,39153,2,Copb1-201,19683,Copb1-201,Copb1,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,70349,ENSMUSG00000030754,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13716,cg15105994,-0.00000605,0.00000166,-3.653139465,0.000304067,loss,ns,-0.000000132,0.00000281,-0.046906954,0.962617589,neg,ns,-0.000331513,0.000823845,-0.402397689,0.687668696,neg,ns,0.162620745,-0.0000198,0.0000283,-0.700389031,0.484209695,neg,ns,0.969007343,Rapgef4,Rapgef4_Exon,2,72229017,72229066,72229065,72229066,50,+,CTCAAACCTAATGATGTTTCAGTATTTACGACGCTCACCATTAATGGACG,"Exon (Rapgef4-202/Rapgef4, exon 23 of 31)",2,71981240,72257474,276235,1,Rapgef4-202,247777,Rapgef4-202;Rapgef4-203;Rapgef4-201;Rapgef4-210,Rapgef4;Rapgef4;Rapgef4;Rapgef4,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,11,56508,ENSMUSG00000049044,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23659,cg07853606,-0.0000151,0.00000269,-5.612740386,4.42E-08,loss,yes,-0.000000214,0.00000457,-0.04686533,0.962650737,neg,ns,-0.002251163,0.001337551,-1.683048762,0.093372424,neg,ns,1.029781365,0.00000632,0.000046,0.137477871,0.890742331,pos,ns,0.962860137,Mbtps1,Mbtps1_Exon,8,119546088,119546137,119546136,119546137,50,+,ATCTGAATCACCTCAAAATCACTAGGGTAGTCACTGGATGGATTGTTTCG,"Exon (Mbtps1-206/Mbtps1, exon 3 of 22)",8,119508156,119558705,50550,2,Mbtps1-206,12568,Mbtps1-206;Mbtps1-202;Mbtps1-201;Mbtps1-207;Mbtps1-209,Mbtps1;Mbtps1;Mbtps1;Mbtps1;Mbtps1,0;0;0;0;12304,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,56453,ENSMUSG00000031835,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27420,cg26337676,0.0000015,0.0000038,0.3937931,0.69400452,gain,ns,-0.000000302,0.00000645,-0.046854386,0.962659452,neg,ns,0.002236563,0.001890813,1.182858076,0.237771778,pos,ns,0.623839694,-0.000143622,0.000065,-2.208719211,0.02792548,neg,ns,0.907710686,Frmpd4,Frmpd4_threeUTR,X,167474193,167474242,167474193,167474194,50,-,CGCATGCAAGCTTCTGTTAGGCAACAGAGCACTTGAAAGCTGGAAGTCAT,3' UTR,20,167471309,167855077,383769,2,Frmpd4-205,380835,Frmpd4-205;Frmpd4-203;Frmpd4-201;Frmpd4-204;Frmpd4-202;Frmpd4-206;Frmpd4-207,Frmpd4;Frmpd4;Frmpd4;Frmpd4;Frmpd4;Frmpd4;Frmpd4,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,3,333605,ENSMUSG00000049176,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6931,cg21056459,-0.000063,0.00000779,-8.084692618,1.41E-14,loss,yes,-0.00000062,0.0000132,-0.046814698,0.962691059,neg,ns,-0.012819974,0.003877122,-3.306569638,0.001055408,neg,ns,2.976579463,0.000254779,0.000133334,1.910831181,0.056948505,pos,ns,0.903206981,Hs3st1,Hs3st1_Intron,5,39716272,39716321,39716272,39716273,50,-,CGTCATAGATGCTGCCGATAATAGTTGGCTTAGGCTAAATGTTTCCTTGT,"Intron (Hs3st1-202/Hs3st1, intron 2 of 2)",5,39613935,39755475,141541,2,Hs3st1-202,39154,Hs3st1-202,Hs3st1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,15476,ENSMUSG00000051022,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24356,cg06090310,-0.00000485,0.00000295,-1.64221661,0.101559098,loss,ns,0.000000235,0.00000501,0.046791583,0.962709467,pos,ns,0.00590705,0.001468732,4.02186927,0.0000726,pos,ns,4.139154993,-0.000163554,0.0000505,-3.238076329,0.001333806,neg,ns,0.932011498,1110065P20Rik,1110065P20Rik_threeUTR,4,124849125,124849174,124849125,124849126,50,-,CGGACTTCCACTGAGCGATGTGAAAACGTTACAGGTTCAGTACTTCCAAA,3' UTR,4,124849080,124850330,1251,2,1110065P20Rik-205,1156,1110065P20Rik-205;1110065P20Rik-204;1110065P20Rik-201;1110065P20Rik-202;1110065P20Rik-206;1110065P20Rik-203;Mtf1-202;Mtf1-201;Yrdc-201;Yrdc-202;Yrdc-203,1110065P20Rik;1110065P20Rik;1110065P20Rik;1110065P20Rik;1110065P20Rik;1110065P20Rik;Mtf1;Mtf1;Yrdc;Yrdc;Yrdc,0;1556;1635;1487;2022;1299;0;0;-1505;-2177;-2721,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,3,68920,ENSMUSG00000078570,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22615,cg25350245,-0.0000109,0.00000295,-3.68946641,0.000265352,loss,ns,0.000000234,0.00000501,0.046710922,0.962773702,pos,ns,0.0000525,0.00146739,0.035767854,0.971490486,pos,ns,0.012561448,-0.0000959,0.0000505,-1.899991042,0.05836205,neg,ns,0.935415968,Msi1,Msi1_Intron,5,115434945,115434994,115434945,115434946,50,-,CGCTCCTGGGGTAATTAGGACCATGTGTTCTTCCTAAAACAGGGCTGGGG,"Intron (Msi1-208/Msi1, intron 5 of 14)",5,115429599,115455698,26100,1,Msi1-208,5346,Msi1-208;Msi1-209;Msi1-201;Msi1-203;Msi1-206;Msi1-205;Msi1-207;Msi1-204;Msi1-202,Msi1;Msi1;Msi1;Msi1;Msi1;Msi1;Msi1;Msi1;Msi1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,14,17690,ENSMUSG00000054256,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
21983,cg21084401,0.0000101,0.0000039,2.58428312,0.010215267,gain,ns,0.000000309,0.00000663,0.04661387,0.962850992,pos,ns,0.004911931,0.00194221,2.529042707,0.011933099,pos,ns,1.92324676,-0.0000892,0.0000668,-1.335344561,0.182743276,neg,ns,0.089194592,Dmrta2,Dmrta2_Promoter,4,109974674,109974723,109974722,109974723,50,+,CTTTTAATGTCAGAAAGATTTAGTTTAATATCATCTCTATTAGGCTGCCG,Promoter (3-4kb),4,109978053,109983687,5635,1,Dmrta2-201,-3330,Dmrta2-201,Dmrta2,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,7,13,242620,ENSMUSG00000047143,conserved gene and region,4,109974722,109974905,184,*,184,15,0.60326087,0.917553192,0.081521739,1.96E-10,CpGisland,TRUE,U13,Hc-P
18271,cg04908419,-0.00000015,0.0000024,-0.062409099,0.950277268,loss,ns,-0.00000019,0.00000408,-0.046550747,0.962901261,neg,ns,-0.00209891,0.001194581,-1.757026029,0.079900546,neg,ns,1.097450252,0.0000496,0.0000411,1.207106368,0.228311429,pos,ns,0.935873423,Xylt2,Xylt2_Exon,11,94667213,94667262,94667213,94667214,50,-,CGCCTGCGTCACCAGGTAGCCCTGGAAATGGTCGTCATAGAAATACAGGT,"Exon (Xylt2-201/Xylt2, exon 9 of 11)",11,94663851,94677515,13665,2,Xylt2-201,10253,Xylt2-201;Xylt2-204;Xylt2-203;Xylt2-205;Xylt2-202,Xylt2;Xylt2;Xylt2;Xylt2;Xylt2,0;0;0;0;10145,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,217119,ENSMUSG00000020868,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27895,cg27118468,0.0000527,0.0000288,1.830497335,0.068135535,gain,ns,0.00000226,0.0000489,0.046233788,0.963153681,pos,ns,0.089415942,0.014318549,6.244762678,1.40E-09,pos,ns,8.854947592,-0.000414954,0.000492414,-0.842694106,0.400049236,neg,ns,0.572217202,Prox1,Prox1_Intron,1,190149393,190149442,190149393,190149394,50,-,CGGGACATCTCAGCCTCAATATGGGCTGAAGAAACTTCCTAAATATTCAA,"Intron (Prox1-202/Prox1, intron 3 of 4)",1,190118035,190170714,52680,2,Prox1-202,21272,Prox1-202;Prox1-201;Prox1-203,Prox1;Prox1;Prox1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,18,59,19130,ENSMUSG00000010175,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6014,cg25547423,0.00000468,0.0000024,1.953085427,0.051708943,gain,ns,-0.000000188,0.00000407,-0.046203329,0.963177938,neg,ns,-0.000958671,0.00119205,-0.804219929,0.421886261,neg,ns,0.374804617,0.0000462,0.000041,1.126294336,0.260912086,pos,ns,0.970342327,Cxxc5,Cxxc5_Intron,18,35855647,35855696,35855647,35855648,50,-,CGGGGCGCTGGCTCCGCATTGCTGATGAAACGGAGCCCTTTGTTGTCCCT,"Intron (Gm50371-201/Gm50371-201, intron 4 of 4)",18,35829397,35859002,29606,1,Cxxc5-202,26250,Cxxc5-202;Cxxc5-201;Cxxc5-206;Cxxc5-203;Cxxc5-204;Cxxc5-205,Cxxc5;Cxxc5;Cxxc5;Cxxc5;Cxxc5;Cxxc5,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,49,67393,ENSMUSG00000046668,conserved gene and region,18,35855560,35855824,265,*,265,22,0.671698113,0.73685541,0.083018868,2.89E-15,CpGisland,TRUE,U8,En-Pd
20480,cg10586111,0.0000376,0.00000584,6.440169713,4.54E-10,gain,yes,0.000000458,0.00000992,0.046201223,0.963179616,pos,ns,0.006186273,0.002906414,2.128489732,0.034084848,pos,ns,1.467438643,-0.0000897,0.0001,-0.897315203,0.37024708,neg,ns,0.138421129,Hoxc4,Hoxc4_Intergenic_downstream,15,103061740,103061789,103061740,103061741,50,-,CGCTGCTGTTGAAGGTTAAAAGATGGTCTTCCCTTGACAAGTGGGACTAT,Distal Intergenic,15,103034395,103036852,2458,1,Hoxc4-201,27394,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,32,91,15423,ENSMUSG00000075394,mapped to different genes,15,103061537,103061809,273,*,273,19,0.586080586,0.8125,0.06959707,7.69E-12,CpGisland,TRUE,U13,Hc-P
27080,cg25392006,-0.0000506,0.0000124,-4.068520804,0.0000601,loss,ns,-0.000000974,0.0000211,-0.046089773,0.963268373,neg,ns,-0.020772705,0.006193015,-3.354215294,0.000894728,neg,ns,3.048309192,0.000409523,0.000212977,1.922847179,0.055415191,pos,ns,0.781538999,Ctnnbl1,Ctnnbl1_Intron,2,157887720,157887769,157887768,157887769,50,-,TTTGCTGGCAGGATGACAGCTGATGTATCCCTTGAGGTCTCAGGAAAACG,"Intron (Ctnnbl1-201/Ctnnbl1, intron 15 of 15)",2,157737401,157891614,154214,1,Ctnnbl1-201,150319,Ctnnbl1-201,Ctnnbl1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,8,66642,ENSMUSG00000027649,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13502,cg06998540,0.0000245,0.00000947,2.585263774,0.01018688,gain,ns,0.000000741,0.0000161,0.046044487,0.963304439,pos,ns,0.004722338,0.004713546,1.001865349,0.317190004,pos,ns,0.498680508,-0.000296917,0.000162098,-1.83170962,0.067954114,neg,ns,0.53005767,Gm6062,Gm6062_Intergenic_upstream,X,70946154,70946203,70946154,70946155,50,-,CGTTATCTGACCTTGATTGGTGTTTGGGGAGCCGGTTAAATAGATTACAT,Distal Intergenic,20,70978281,70978911,631,1,Gm6062-201,-32127,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,606531,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5927,cg09082380,0.0000421,0.0000179,2.355169041,0.019137212,gain,ns,0.0000014,0.0000304,0.04602511,0.963319871,pos,ns,0.013510837,0.008892565,1.51934071,0.12969597,pos,ns,0.88707352,-0.00024723,0.000305815,-0.808430673,0.419462662,neg,ns,0.273843828,Osr2,Osr2_threeUTR,15,35302881,35302930,35302881,35302882,50,-,CGGCACAGCCTGACTCACACCCCGCGGCAGGACTTCTAGAGAAGCCCAGG,3' UTR,15,35296098,35303304,7207,1,Osr2-203,6783,Osr2-203;Osr2-201;Osr2-205;Osr2-204,Osr2;Osr2;Osr2;Osr2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,6,107587,ENSMUSG00000022330,conserved gene but different region,15,35302838,35302979,142,*,142,12,0.654929578,0.815311005,0.084507042,1.33E-08,CpGisland,TRUE,NA,NRS
15193,cg05022221,0.00000867,0.00000269,3.225151896,0.001393435,gain,ns,-0.00000021,0.00000457,-0.046019659,0.963324212,neg,ns,0.000263286,0.001338176,0.196749787,0.844152273,pos,ns,0.073579206,-0.0000127,0.000046,-0.275494118,0.783120186,neg,ns,0.947859489,Ddx17,Ddx17_Exon,15,79533195,79533244,79533243,79533244,50,-,CCAAGCGCCGGAGAACCTGGGTTCGGGTAAAAATTTCAGGTCCTCCAACG,"Exon (Ddx17-204/Ddx17, exon 12 of 12)",15,79527736,79546741,19006,2,Ddx17-201,13497,Ddx17-201;Ddx17-203;Ddx17-204;Ddx17-202,Ddx17;Ddx17;Ddx17;Ddx17,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,14,67040,ENSMUSG00000055065,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15950,cg11074487,-0.000000018,0.00000202,-0.008892319,0.992910769,loss,ns,0.000000158,0.00000343,0.045996442,0.963342702,pos,ns,0.000122229,0.001006056,0.121492794,0.903379435,pos,ns,0.0441298,0.0000254,0.0000346,0.73432382,0.463306466,pos,ns,0.954614869,Gm50420,Gm50420_Intergenic_downstream,18,83944733,83944782,83944733,83944734,50,+,CGATTGATAACTCATAAATGCAAGCAGGAATGACAAATGCGGATGGAAAC,Distal Intergenic,18,83905796,83905942,147,1,Gm50420-201,38937,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,9,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20197,cg05895882,0.0000471,0.00000526,8.94541037,3.45E-17,gain,yes,0.000000411,0.00000894,0.045982376,0.963353904,pos,ns,0.007772426,0.002619405,2.967248636,0.003238658,pos,ns,2.48963487,-0.000115432,0.0000901,-1.281426438,0.20100159,neg,ns,0.108811521,Hoxc12,Hoxc12_Exon,15,102938398,102938447,102938398,102938399,50,+,CGGAGGGAACTCTCAGACCGCTTGAATCTTAGTGACCAGCAGGTCAAGAT,"Exon (Hoxc12-201/Hoxc12, exon 2 of 2)",15,102936757,102938609,1853,1,Hoxc12-201,1641,Hoxc12-201,Hoxc12,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,6,15421,ENSMUSG00000050328,conserved gene and region,15,102938261,102938417,157,*,157,17,0.624203822,1.112083333,0.108280255,6.80E-14,CpGisland,TRUE,U13,Hc-P
3377,cg16549948,-0.0000121,0.00000534,-2.256196575,0.024754844,loss,ns,-0.000000417,0.00000908,-0.045976441,0.963358631,neg,ns,0.000500145,0.002659685,0.188046925,0.850962898,pos,ns,0.070089375,-0.000225688,0.0000915,-2.467444715,0.014148109,neg,ns,0.913370791,Rtp2,Rtp2_Exon,16,23930579,23930628,23930627,23930628,50,+,CAGCTCACTGGGCTTGAGGTTGGGGTCTATGATGAGCTCCCAGCTGTCCG,Promoter (<=1kb),16,23925548,23930794,5247,2,Rtp2-201,166,Rtp2-201;Rtp2-202,Rtp2;Rtp2,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,224055,ENSMUSG00000047531,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8030,cg08542913,0.00000853,0.00000403,2.116015722,0.035140421,gain,ns,0.000000315,0.00000685,0.045942898,0.963385344,pos,ns,-0.003748375,0.00200664,-1.867985641,0.062707369,neg,ns,1.202681418,0.000140249,0.000069,2.032351938,0.042970207,pos,ns,0.816989699,Pax5,Pax5_Exon,4,44697573,44697622,44697621,44697622,50,-,ATGTCGCAGGGCCTGACACCTTGATGAGCAAGTTCCACTATCCTCTGGCG,"Exon (Pax5-201/Pax5, exon 2 of 10)",4,44524757,44710487,185731,2,Pax5-201,12865,Pax5-201;Pax5-202;Pax5-203;Pax5-204;Pax5-205;Pax5-207;Pax5-206;Pax5-209;Pax5-210;Pax5-212;Pax5-213;Pax5-214;Pax5-215;Pax5-208;Pax5-216;Pax5-217;Pax5-218;Pax5-219,Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,45,18507,ENSMUSG00000014030,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1304,cg25831888,5.97E-09,0.0000103,0.000577559,0.999539546,gain,ns,-0.000000806,0.0000176,-0.045847152,0.963461596,neg,ns,0.004006039,0.005148826,0.778048999,0.43713354,pos,ns,0.35938587,0.000042,0.000177068,0.237420212,0.812487641,pos,ns,0.691873076,Sox1,Sox1_Intergenic_upstream,8,12339861,12339910,12339909,12339910,50,-,CTTTAAGTGATCTGGCTGTGAACTGTTCAAATCTCTAATTACATTATACG,Distal Intergenic,8,12395295,12400126,4832,1,Sox1-201,-55434,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,15,20664,ENSMUSG00000096014,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26167,cg11453286,-0.00000294,0.00000155,-1.899358631,0.058445412,loss,ns,-0.00000012,0.00000263,-0.045830605,0.963474774,neg,ns,-0.000187304,0.000770257,-0.243170813,0.808033902,neg,ns,0.092570417,0.0000311,0.0000265,1.17231975,0.241968818,pos,ns,0.044567535,Lmo4,Lmo4_Promoter,3,144204251,144204300,144204251,144204252,50,-,CGTAACGCTGGCAATTTGTAGTACAAAAATGGATGCTTAATTCATGTCTT,Promoter (<=1kb),3,144188530,144205220,16691,2,Lmo4-201,920,Lmo4-203;Lmo4-201;Lmo4-202;Lmo4-207;Lmo4-208;Lmo4-205;Lmo4-204,Lmo4;Lmo4;Lmo4;Lmo4;Lmo4;Lmo4;Lmo4,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,5,54,16911,ENSMUSG00000028266,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
10204,cg03582041,0.0000802,0.0000069,11.61732968,3.83E-26,gain,yes,-0.000000537,0.0000117,-0.045804826,0.963495304,neg,ns,0.005592528,0.003436526,1.627378247,0.104672721,pos,ns,0.980166484,0.000124218,0.000118182,1.051074652,0.294042953,pos,ns,0.294450374,Hoxa10,Hoxa10_Exon,6,52234872,52234921,52234872,52234873,50,+,CGAGCATGACATTGTTGTGGGATAATTTGGCGAAGGGAGCAGATAGCCCT,Promoter (<=1kb),6,52231197,52234939,3743,2,Hoxa10-202,18,Hoxa10-202;Hoxa10-203;Hoxa10-201;Hoxa10-204;Hoxa9-203;Hoxa9-204;Hoxa9-205,Hoxa10;Hoxa10;Hoxa10;Hoxa10;Hoxa9;Hoxa9;Hoxa9,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,7,15395,ENSMUSG00000000938,mapped to different genes,6,52234023,52234903,881,*,881,97,0.707150965,0.884172081,0.110102157,5.50E-78,CpGisland,TRUE,U13,Hc-P
7034,cg13480742,0.0000669,0.00000758,8.828530994,7.96E-17,gain,yes,-0.000000589,0.0000129,-0.045734599,0.963551233,neg,ns,0.005985762,0.003771908,1.586932149,0.113547451,pos,ns,0.94482261,0.0000113,0.000129716,0.087422915,0.930391799,pos,ns,0.127891248,Tfap2a,Tfap2a_Intergenic_downstream,13,40709184,40709233,40709184,40709185,50,+,CGCTGGAAAGAAGCATATGTTTGGCCCGGGGCGACACTTCCCCCCGGCTG,Distal Intergenic,13,40716724,40728944,12221,2,Tfap2a-209,19711,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,15,57,21418,ENSMUSG00000021359,mapped to different genes,13,40709088,40709361,274,*,274,22,0.653284672,0.763037975,0.080291971,5.99E-15,CpGisland,TRUE,U13,Hc-P
698,cg13392324,-0.00000543,0.00000154,-3.526137136,0.000485334,loss,ns,0.00000012,0.00000262,0.045701771,0.963577378,pos,ns,0.0000737,0.000766246,0.096230073,0.923400026,pos,ns,0.034610118,-0.0000101,0.0000264,-0.38290457,0.70205294,neg,ns,0.953444169,Pxk,Pxk_Exon,14,8146198,8146247,8146198,8146199,50,-,CGTGTTGGAGTCTACGCTGTCTTGTGAAGCCTGTAAAAATGGCATGCCTA,"Exon (Pxk-201/Pxk, exon 12 of 18)",14,8098211,8165117,66907,1,Pxk-201,47987,Pxk-201;Pxk-202;Pxk-204;Pxk-205,Pxk;Pxk;Pxk;Pxk,0;0;47946;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,218699,ENSMUSG00000033885,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20557,cg15762979,0.00000537,0.0000026,2.062690685,0.039974717,gain,ns,-0.000000201,0.00000442,-0.045563485,0.96368751,neg,ns,0.002443353,0.001294861,1.886961153,0.060099777,pos,ns,1.221127141,-0.0000632,0.0000445,-1.419427255,0.156779234,neg,ns,0.934939723,Nckap1l,Nckap1l_threeUTR,15,103472777,103472826,103472825,103472826,50,+,GCTTTCATGGCCCTGTCCTTCATTCGTGATGAGGTCACCTGGCTGGTTCG,3' UTR,15,103453794,103498801,45008,1,Nckap1l-203,18983,Nckap1l-203;Nckap1l-202;Nckap1l-201,Nckap1l;Nckap1l;Nckap1l,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,2,105855,ENSMUSG00000022488,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14936,cg09530766,0.000037,0.00000747,4.951920269,0.00000121,gain,yes,-0.000000577,0.0000127,-0.045493427,0.963743305,neg,ns,0.005307158,0.00371728,1.427699447,0.154384965,pos,ns,0.811394997,0.0000125,0.000127837,0.097882822,0.922088597,pos,ns,0.282978771,Nr2f1,Nr2f1_Intergenic_downstream,13,78185476,78185525,78185476,78185477,50,-,CGCTTTCAGATAGATATCTCAGACGTGAAATTGCGCCCAGCTGGTTGTGT,Distal Intergenic,13,78189872,78190443,572,2,Nr2f1-204,4967,Nr2f1-201;Nr2f1-205;Nr2f1-203;Nr2f1-202;Nr2f1-204,Nr2f1;Nr2f1;Nr2f1;Nr2f1;Nr2f1,0;0;0;0;4918,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,55,13865,ENSMUSG00000069171,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
22639,cg26665388,0.0000691,0.0000161,4.282136964,0.0000247,gain,ns,-0.00000125,0.0000274,-0.045451138,0.963776985,neg,ns,0.020642278,0.008029805,2.570707175,0.01061558,pos,ns,1.974056252,-0.000507654,0.000276144,-1.838364076,0.066965361,neg,ns,0.350160504,BC052040,BC052040_Intron,2,115520700,115520749,115520748,115520749,50,-,TTACCTTCATGTCCCTCAAATGACTTGTGTAGGTAGTTTCAACAAAAGCG,"Intron (3110099E03Rik-203/3110099E03Rik-203, intron 1 of 3)",2,115581716,115778768,197053,1,BC052040-203,-61016,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,37,49,399568,ENSMUSG00000040282,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
25618,cg23019935,-0.0000399,0.00000832,-4.795270031,0.00000253,loss,ns,0.000000641,0.0000141,0.045367052,0.963843953,pos,ns,-0.008071837,0.004140418,-1.949522164,0.052134558,neg,ns,1.282874301,0.000111951,0.000142389,0.786236654,0.432329436,pos,ns,0.693404865,Cdc42,Cdc42_Exon,4,137322566,137322615,137322566,137322567,50,+,CGGAGGCTCGAGGGCAGCTAGGATAGCCTCATCAAACACATTCTTCAGAC,"Exon (Cdc42-201/Cdc42, exon 6 of 6)",4,137319696,137357720,38025,2,Cdc42-202,35105,Cdc42-202;Cdc42-201,Cdc42;Cdc42,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,2,12540,ENSMUSG00000006699,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11370,cg25452665,0.0000105,0.00000286,3.671787572,0.000283573,gain,ns,-0.000000219,0.00000486,-0.045096268,0.964059612,neg,ns,0.000126597,0.001422978,0.088966323,0.929166122,pos,ns,0.031906633,-0.000000595,0.0000489,-0.012155028,0.990309748,neg,ns,0.019547384,Hand1,Hand1_Promoter,11,57837128,57837177,57837176,57837177,50,-,AGGACCCGGCCGGCCGCCTGTTTATATTAGCGCGGTGTAAAATATTCTCG,Promoter (4-5kb),11,57828705,57832818,4114,2,Hand1-203,-4359,Hand1-203;Hand1-201;Hand1-202,Hand1;Hand1;Hand1,-4310;-4981;-4310,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,4,4,15110,ENSMUSG00000037335,conserved gene and region,11,57837102,57837281,180,*,180,18,0.533333333,1.408695652,0.1,4.82E-14,CpGisland,TRUE,U13,Hc-P
10371,cg26541201,0.0000932,0.0000103,9.041019952,1.73E-17,gain,yes,0.000000788,0.0000175,0.045027109,0.964114691,pos,ns,0.006026758,0.005129948,1.17481864,0.240968892,pos,ns,0.618039018,-0.000228496,0.000176418,-1.29519237,0.196217588,neg,ns,0.107734782,Npas3,Npas3_Exon,12,53253076,53253125,53253124,53253125,50,+,GATCCTTCCAGGCGAGAACGGTAACACTTTTCTGTTTATTGAACCTGCCG,"Exon (Npas3-202/Npas3, exon 1 of 2)",12,53248157,54069532,821376,1,Npas3-204,4919,Npas3-204;Npas3-201;Npas3-202;Npas3-203,Npas3;Npas3;Npas3;Npas3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,13,103,27386,ENSMUSG00000021010,conserved gene but different region,12,53253050,53253346,297,*,297,40,0.747474748,0.967032967,0.134680135,1.92E-36,CpGisland,TRUE,NA,NRS
20247,cg13543501,0.000021,0.00000656,3.204661422,0.001493052,gain,ns,0.000000502,0.0000111,0.045019196,0.964120994,pos,ns,0.002353164,0.003265576,0.720596825,0.471700627,pos,ns,0.326333547,-0.0000425,0.000112303,-0.378117045,0.705602431,neg,ns,0.158645428,Hoxc10,Hoxc10_Exon,15,102970847,102970896,102970847,102970848,50,+,CGGAAGGAAGAAGAGGTGCCCCTATACTAAACACCAGACGCTGGAATTGG,"Exon (Hoxc10-201/Hoxc10, exon 2 of 2)",15,102966796,102971893,5098,1,Hoxc10-201,4051,Hoxc10-201;Hoxc5-202,Hoxc10;Hoxc5,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,21,209448,ENSMUSG00000022484,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
21770,cg04835100,-0.00000381,0.00000159,-2.394106976,0.01725485,loss,ns,0.000000122,0.00000271,0.045006972,0.964130729,pos,ns,0.000988336,0.000792795,1.246647325,0.213467982,pos,ns,0.670667256,-0.0000352,0.0000273,-1.291354097,0.197542975,neg,ns,0.072886051,Fam102b,Fam102b_fiveUTR,3,109027274,109027323,109027322,109027323,50,+,CTCGAGCTCGAAGTCCACCTTAAACTTAAACTTCTTCTTCTTCATCATCG,Promoter (<=1kb),3,108970997,109027607,56611,2,Fam102b-202,284,Fam102b-201;Fam102b-202,Fam102b;Fam102b,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,3,329739,ENSMUSG00000040339,conserved gene and region,3,109026973,109027932,960,*,960,114,0.703125,0.960960961,0.11875,9.47E-96,CpGisland,TRUE,U1,Pr-A
6223,cg11948201,-0.000000965,0.00000181,-0.532370846,0.594850532,loss,ns,0.000000138,0.00000308,0.044883328,0.964229204,pos,ns,-0.001190469,0.000902402,-1.319222816,0.1880682,neg,ns,0.725684632,0.0000196,0.000031,0.630111989,0.529085491,pos,ns,0.952802658,Lman2l,Lman2l_threeUTR,1,36428400,36428449,36428400,36428401,50,-,CGCTCATGATCATAGCTGAGGGAGCCGTTGTTCACCATGGCTGAGATGTA,3' UTR,1,36419871,36439668,19798,2,Lman2l-207,11219,Lman2l-207;Lman2l-204;Lman2l-205;Lman2l-201;Lman2l-202;Lman2l-206;Lman2l-203,Lman2l;Lman2l;Lman2l;Lman2l;Lman2l;Lman2l;Lman2l,0;0;0;0;0;-34;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,3,214895,ENSMUSG00000001143,conserved gene and region,1,36428300,36428461,162,*,162,10,0.555555556,0.801583375,0.061728395,0.0000055,CpGisland,TRUE,U10,Tr-S
13258,cg01418441,-0.0000189,0.00000668,-2.829760894,0.004962211,loss,ns,-0.000000509,0.0000114,-0.044801825,0.964294116,neg,ns,-0.002971397,0.003326373,-0.893284373,0.372397837,neg,ns,0.428992851,-0.000109492,0.000114394,-0.957154689,0.339235032,neg,ns,0.04436023,Eif5a,Eif5a_fiveUTR,11,69921286,69921335,69921286,69921287,50,-,CGGGTCTTAGTACGCAGGCGCCGACTCCCCACTGACCAACCAAGCAGCCC,Promoter (<=1kb),11,69916720,69921386,4667,2,Eif5a-201,51,Eif5a-213;Eif5a-207;Eif5a-208;Eif5a-209;Eif5a-201;Eif5a-202;Eif5a-210;Eif5a-203;Eif5a-206;Eif5a-205;Eif5a-204;Eif5a-212;Eif5a-211;Gps2-202;Gps2-203;Gps2-201;Gps2-205,Eif5a;Eif5a;Eif5a;Eif5a;Eif5a;Eif5a;Eif5a;Eif5a;Eif5a;Eif5a;Eif5a;Eif5a;Eif5a;Gps2;Gps2;Gps2;Gps2,0;0;0;0;0;0;0;0;0;0;0;-2982;0;7398;7236;7094;5245,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,5,276770,ENSMUSG00000078812,conserved gene and region,11,69920805,69921519,715,*,715,93,0.721678322,1.102315866,0.13006993,1.81E-82,CpGisland,TRUE,U1,Pr-A
10795,cg02307175,0.0000219,0.00000336,6.534285095,2.62E-10,gain,yes,-0.000000255,0.0000057,-0.044723534,0.96435647,neg,ns,0.000685753,0.001670395,0.410533284,0.681698395,pos,ns,0.166407729,-0.00000328,0.0000574,-0.057147813,0.954464266,neg,ns,0.14109339,Prr7,Prr7_Exon,13,55472079,55472128,55472127,55472128,50,+,CTCATCTGGGGTCTCATCGTCCTGCTCTGCTGCTTCTGCAGCTTCCTGCG,"Exon (Prr7-201/Prr7, exon 2 of 3)",13,55464267,55473154,8888,1,Prr7-201,7812,Dbn1-201;Dbn1-203;Dbn1-202;Dbn1-206;Prr7-201,Dbn1;Dbn1;Dbn1;Dbn1;Prr7,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,6,432763,ENSMUSG00000034686,conserved gene and region,13,55471446,55473041,1596,*,1596,178,0.713032582,0.884290343,0.111528822,1.30E-143,CpGisland,TRUE,U3,Pr-B
21247,cg23405931,0.00000197,0.00000467,0.422003265,0.673315142,gain,ns,-0.000000354,0.00000793,-0.044716799,0.964361834,neg,ns,0.002099058,0.002322141,0.903932002,0.36673336,pos,ns,0.435649582,-0.0000691,0.0000799,-0.865362485,0.387509046,neg,ns,0.938501771,Cdc7,Cdc7_Exon,5,106974628,106974677,106974628,106974629,50,-,CGCTCTGTTTTTGGAGAAAGAAATTTCAATATACACAGCTCCATTTCACA,"Exon (Cdc7-201/Cdc7, exon 8 of 12)",5,106964322,106984431,20110,1,Cdc7-203,10306,Cdc7-203;Cdc7-201;Cdc7-202;Cdc7-207;Cdc7-204;Cdc7-206;Cdc7-208;Cdc7-205,Cdc7;Cdc7;Cdc7;Cdc7;Cdc7;Cdc7;Cdc7;Cdc7,0;0;0;0;0;0;0;-561,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,12545,ENSMUSG00000029283,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26470,cg10567956,-0.00000153,0.00000614,-0.24878374,0.803692809,loss,ns,0.000000466,0.0000104,0.04470754,0.964369208,pos,ns,-0.004555642,0.003055023,-1.491197451,0.136926507,neg,ns,0.863512472,0.000159777,0.000105062,1.520786686,0.129332674,pos,ns,0.86955932,Gm572,Gm572_Intergenic_downstream,4,148706796,148706845,148706844,148706845,50,+,TGCTAATACAGACAGACTAATGTTTCCATCGCCCGCCTCTTTTTTTTGCG,Distal Intergenic,4,148643317,148671572,28256,1,Gm572-201,63479,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,11,230909,ENSMUSG00000070577,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25719,cg02001174,0.0000463,0.0000149,3.117887848,0.001992395,gain,ns,-0.00000113,0.0000252,-0.044692871,0.964380891,neg,ns,0.019391449,0.007391813,2.623368342,0.009137092,pos,ns,2.039192012,-0.000833874,0.000254204,-3.28033555,0.001154952,neg,ns,0.192576987,Igbp1b,Igbp1b_Intergenic_upstream,6,138708954,138709003,138709002,138709003,50,-,TTGGGTGTGTGCTGCCTTCTCACTGAACGGTTAACTATCCGAGTAGGCCG,Distal Intergenic,6,138657089,138658544,1456,2,Igbp1b-201,-50459,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,5,50540,ENSMUSG00000046717,mapped to different genes,6,138708974,138709033,60,*,60,7,0.633333333,1.217391304,0.116666667,0.00000466,CpGisland,TRUE,U15,NS
1260,cg25161175,-0.00000176,0.0000075,-0.23452454,0.814732606,loss,ns,-0.000000569,0.0000127,-0.044624776,0.964435125,neg,ns,0.012764395,0.003732778,3.419543077,0.000711221,pos,ns,3.147995214,-0.000305933,0.00012837,-2.383211073,0.017764406,neg,ns,0.557597664,Bcor,Bcor_Exon,X,12137435,12137484,12137435,12137436,50,-,CGCCGCTAGAAGTCGTCCATCAGCAACCAGTCCAACCTGCCAGTGATAAT,"Exon (Bcor-208/Bcor, exon 2 of 5)",20,12036743,12160355,123613,2,Bcor-201,22871,Bcor-201;Bcor-208,Bcor;Bcor,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,74,71458,ENSMUSG00000040363,conserved gene but different region,X,12137394,12137618,225,*,225,20,0.635555556,0.882352941,0.088888889,1.63E-14,CpGisland,TRUE,U3,Pr-B
10273,cg07107529,0.0000252,0.00000566,4.459419491,0.0000115,gain,ns,-0.000000428,0.00000961,-0.044572167,0.964477025,neg,ns,0.004940463,0.002814755,1.755202167,0.080212488,pos,ns,1.095758015,-0.000136611,0.0000968,-1.411285087,0.159163393,neg,ns,0.064231724,Evx1,Evx1_Intergenic_downstream,6,52323040,52323089,52323088,52323089,50,+,GCGACTTTGATGTATTGCTGTCCAATTAGTGCCTTTAATTGGTGTCCTCG,Distal Intergenic,6,52313552,52316644,3093,1,Evx1-202,9488,Evx1-201,Evx1,0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,19,14028,ENSMUSG00000005503,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
22279,cg04098553,-0.0000215,0.00000795,-2.707035144,0.007165059,loss,ns,-0.000000602,0.0000135,-0.044561592,0.964485447,neg,ns,-0.008896634,0.0039587,-2.247362486,0.025319903,neg,ns,1.596537956,0.000458064,0.000136139,3.364672811,0.000862655,pos,ns,0.914584803,Tead1,Tead1_Exon,7,112842060,112842109,112842108,112842109,50,-,TCTTGCCAGAAGGAAATCTCGTGATTTTCATTCCAAGCTAAAGGTATGCG,"Exon (Tead1-203/Tead1, exon 4 of 12)",7,112679318,112899459,220142,1,Tead1-203,162742,Tead1-203;Tead1-216;Tead1-217;Tead1-201;Tead1-204;Tead1-214;Tead1-206;Tead1-202;Tead1-211;Tead1-207;Tead1-210;Tead1-212;Tead1-208;Tead1-209;Tead1-215,Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1;Tead1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,16,21676,ENSMUSG00000055320,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
8672,cg25542419,0.0000171,0.00000308,5.539412436,6.48E-08,gain,yes,-0.000000233,0.00000524,-0.044537281,0.96450481,neg,ns,0.001497518,0.001534838,0.975684577,0.329981542,pos,ns,0.481510353,-0.000028,0.0000528,-0.530208167,0.596347175,neg,ns,0.047288742,Fermt2,Fermt2_fiveUTR,14,45529542,45529591,45529542,45529543,50,+,CGTAGCAGCCATCTGGCATCCTTATCCCGTCCAGAGCCATGGCTCCTTCC,Promoter (<=1kb),14,45458795,45530118,71324,2,Fermt2-201,527,Fermt2-201;Fermt2-204;Fermt2-203,Fermt2;Fermt2;Fermt2,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,3,218952,ENSMUSG00000037712,conserved gene but different region,14,45529410,45530505,1096,*,1096,142,0.73540146,0.962592776,0.129562044,2.61E-125,CpGisland,TRUE,U1,Pr-A
26819,cg21722714,0.00000158,0.00000133,1.190389903,0.234803949,gain,ns,-0.0000001,0.00000225,-0.044478595,0.96455155,neg,ns,0.001065797,0.000660427,1.613800142,0.107588193,pos,ns,0.968235386,-0.0000297,0.0000227,-1.305945858,0.192539202,neg,ns,0.030274463,Id1,Id1_Intergenic_downstream,2,152739406,152739455,152739406,152739407,50,+,CGTTTCCATCAGCTGGGCCCGAGGAATGCGGAGCTATTTAACCTGAGCAT,Distal Intergenic,2,152736251,152737410,1160,1,Id1-202,3155,Id1-201;Id1-202,Id1;Id1,3155;3155,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,5,15901,ENSMUSG00000042745,mapped to different genes,2,152739337,152739589,253,*,253,25,0.707509881,0.795197385,0.098814229,3.23E-19,CpGisland,TRUE,U6,En-Sp
9325,cg19417528,0.0000141,0.0000103,1.361104733,0.174469172,gain,ns,-0.000000779,0.0000176,-0.044382335,0.964628217,neg,ns,-0.011003321,0.005144104,-2.139016141,0.033215385,neg,ns,1.478660705,0.000230636,0.000176905,1.303726984,0.193293999,pos,ns,0.761493814,Slit2,Slit2_Intron,5,48181924,48181973,48181924,48181925,50,-,CGCTGAAAGCTCTTAATGGATAGCTTTTCTTGATCTAATGAAATTGCATT,"Intron (Slit2-208/Slit2, intron 5 of 35)",5,47983138,48307733,324596,1,Slit2-208,198786,Slit2-208;Slit2-207;Slit2-201;Slit2-202;Slit2-216;Slit2-217;Slit2-219;Slit2-213;Slit2-222;Slit2-209,Slit2;Slit2;Slit2;Slit2;Slit2;Slit2;Slit2;Slit2;Slit2;Slit2,0;0;0;0;0;0;0;0;7690;-129,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,11,20563,ENSMUSG00000031558,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9674,cg12101354,1.28E-08,0.00000867,0.001473191,0.998825512,gain,ns,-0.000000653,0.0000147,-0.04428311,0.964707245,neg,ns,-0.003009823,0.004317414,-0.697135552,0.48624043,neg,ns,0.313148933,0.000103741,0.000148476,0.698709713,0.485257303,pos,ns,0.126034609,Slc6a5,Slc6a5_fiveUTR,7,49911678,49911727,49911678,49911679,50,+,CGAACTTGACATTGTGTTTGCAGGATTGCAGTGCTCCCAAGGAAATGAAT,Promoter (<=1kb),7,49911700,49959493,47794,1,Slc6a5-202,0,Slc6a5-201;Slc6a5-204;Slc6a5-203;Slc6a5-202,Slc6a5;Slc6a5;Slc6a5;Slc6a5,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,5,104245,ENSMUSG00000039728,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
3202,cg14627743,0.0000423,0.00000625,6.76511854,6.65E-11,gain,yes,0.00000047,0.0000106,0.044238225,0.964742995,pos,ns,0.008547453,0.003110176,2.748221601,0.006343004,pos,ns,2.197705011,-0.000132864,0.000106959,-1.242202367,0.215100808,neg,ns,0.04463492,Fezf1,Fezf1_fiveUTR,6,23248213,23248262,23248213,23248214,50,-,CGAACCTGCCTGCCCAGCCCAATGGACTCCTGCCAGCCCATCGCAGAGTT,Promoter (<=1kb),6,23245044,23248362,3319,2,Fezf1-201,100,Fezf1-201,Fezf1,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,7,73191,ENSMUSG00000029697,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6041,cg14902107,-0.000000209,0.000000336,-0.62019061,0.535587933,loss,ns,2.52E-08,0.000000572,0.044118644,0.964838236,pos,ns,0.000278096,0.000167458,1.660694581,0.097785846,pos,ns,1.009724002,-0.00000786,0.00000576,-1.36512374,0.173204032,neg,ns,0.007562743,Cxxc5,Cxxc5_Intron,18,35889787,35889836,35889787,35889788,50,+,CGCGTCTGGCATCCGGAGTCTCCCGGGATCGAAAATAATTTGGGCAAAGC,"Intron (Gm36315-201/Gm36315-201, intron 1 of 1)",18,35854738,35858619,3882,1,Cxxc5-205,35049,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,49,67393,ENSMUSG00000046668,conserved gene and region,18,35889630,35890054,425,*,425,43,0.656470588,0.954108802,0.101176471,3.55E-33,CpGisland,TRUE,U3,Pr-B
21048,cg18861907,-0.0000429,0.00000794,-5.397586799,0.000000135,loss,yes,-0.000000595,0.0000135,-0.044110949,0.964844365,neg,ns,-0.010919484,0.003953386,-2.76205891,0.006086587,neg,ns,2.215626161,0.000197196,0.000135957,1.45043243,0.147949005,pos,ns,0.938848749,Map3k3,Map3k3_Intergenic_downstream,11,106155550,106155599,106155598,106155599,50,+,AGCCTTCGTTGTATGTTGACGATGCACTTTTATGAATGTAGTTTCTATCG,Downstream (<1kb),11,106152064,106154140,2077,1,Map3k3-202,3486,Limd2-201;Limd2-204;Limd2-202;Limd2-203;Map3k3-201;Map3k3-203;Map3k3-202,Limd2;Limd2;Limd2;Limd2;Map3k3;Map3k3;Map3k3,4543;3810;4328;5261;0;4338;3486,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,2,4,26406,ENSMUSG00000020700,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22163,cg09252678,-6.88E-08,0.00000921,-0.007470895,0.994043949,loss,ns,-0.00000069,0.0000157,-0.044103846,0.964850022,neg,ns,-0.01145443,0.004586075,-2.497654612,0.013019908,neg,ns,1.8853921,0.000341909,0.000157715,2.167895098,0.030927332,pos,ns,0.832763892,Grm7,Grm7_threeUTR,6,111495728,111495777,111495776,111495777,50,+,CCGAAAGTGTACATCATCATTTTCCACCCTGAACTCAATGTCCAGAAACG,Promoter (<=1kb),6,111495744,111502284,6541,1,Grm7-205,0,Grm7-204;Grm7-201;Grm7-202;Grm7-203;Grm7-205,Grm7;Grm7;Grm7;Grm7;Grm7,0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,6,108073,ENSMUSG00000056755,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6390,cg02469990,0.0000198,0.00000352,5.612282581,4.43E-08,gain,yes,0.000000264,0.00000598,0.044070339,0.964876709,pos,ns,0.004170552,0.001752975,2.379127659,0.017958756,pos,ns,1.745723753,-0.0000888,0.0000603,-1.473402293,0.141657247,neg,ns,0.038669521,Meox2,Meox2_Exon,12,37108982,37109031,37108982,37108983,50,-,CGGGATACCCCAACGAAGAGGGCATGTTTGCCAGCCAGCATCACAGGGGG,Promoter (<=1kb),12,37108540,37179534,70995,1,Meox2-201,442,Meox2-201,Meox2,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,3,17286,ENSMUSG00000036144,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
5097,cg27558880,-0.000001,0.000000706,-1.418013474,0.157191248,loss,ns,-5.29E-08,0.0000012,-0.04406635,0.964879887,neg,ns,-0.0000482,0.000351426,-0.137266912,0.890908932,neg,ns,0.050166687,0.000005,0.0000121,0.414122598,0.679070706,pos,ns,0.985597569,Dnm1,Dnm1_threeUTR,2,32309014,32309063,32309062,32309063,50,+,AAGGGGGGCCTGGGGCTCTCAGGACGGGATGGACTTGCCTGACCCGATCG,3' UTR,2,32308471,32353263,44793,2,Dnm1-204,44200,Dnm1-204;Dnm1-209;Dnm1-202;Dnm1-201;Dnm1-203;Dnm1-205;Dnm1-214;Dnm1-206;Dnm1-216;Dnm1-211;Dnm1-212;Dnm1-217;Dnm1-208;Dnm1-215;Dnm1-213;Dnm1-210;Golga2-203;Golga2-212;Golga2-213;Golga2-202;Golga2-201;Golga2-204,Dnm1;Dnm1;Dnm1;Dnm1;Dnm1;Dnm1;Dnm1;Dnm1;Dnm1;Dnm1;Dnm1;Dnm1;Dnm1;Dnm1;Dnm1;Dnm1;Golga2;Golga2;Golga2;Golga2;Golga2;Golga2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;8268;4014;20761;20761;20761;20701;20668;11934,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,16,13429,ENSMUSG00000026825,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10994,cg04083183,-0.00002,0.00000337,-5.933100773,7.94E-09,loss,yes,-0.000000252,0.00000573,-0.044038925,0.964901729,neg,ns,-0.003266711,0.001677612,-1.947238156,0.052408918,neg,ns,1.280594807,0.0000153,0.0000577,0.264997146,0.791187777,pos,ns,0.947636116,Gm50135,Gm50135_Intergenic_downstream,19,56099973,56100022,56099973,56099974,50,+,CGTGGGACAGGTGAAAACTTAAATGACATTTGCAAACCTTGATTTATTTC,Distal Intergenic,19,56012529,56012925,397,1,Gm50135-201,87444,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,7,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U14,Hc-H
20384,cg03705387,0.0000416,0.00000408,10.19753794,3.02E-21,gain,yes,-0.000000305,0.00000694,-0.043913463,0.965001656,neg,ns,0.006020616,0.002032066,2.962804999,0.003284452,pos,ns,2.483537132,-0.000186955,0.0000699,-2.675279299,0.007863205,neg,ns,0.112541283,Hoxc5,Hoxc5_Intron,15,103014654,103014703,103014654,103014655,50,-,CGTAAAACTGTCCACTAAAAGGCTTAGAGGCTGTGTGCGCCCAAATTTAC,"Intron (Hoxc5-202/Hoxc5, intron 1 of 1)",15,102967443,103015676,48234,1,Hoxc5-202,47211,Hoxc4-202;Hoxc5-202;Hoxc5-201;Hoxc6-202;Hoxc6-203;Hoxc6-201,Hoxc4;Hoxc5;Hoxc5;Hoxc6;Hoxc6;Hoxc6,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,46,134,15424,ENSMUSG00000022485,mapped to different genes,15,103014167,103014734,568,*,568,41,0.588028169,0.835773758,0.072183099,1.73E-25,CpGisland,TRUE,U13,Hc-P
16558,cg26986270,0.0000266,0.0000109,2.441597531,0.015181326,gain,ns,-0.000000811,0.0000185,-0.043809932,0.965084115,neg,ns,0.007584966,0.005421181,1.399135235,0.162772188,pos,ns,0.788419799,-0.000102062,0.000186434,-0.547444322,0.58446742,neg,ns,0.356638563,Camkmt,Camkmt_Intron,17,85454777,85454826,85454825,85454826,50,-,TGGAATAGAGCGTAACCAGCTGGAGGACTGTAAGACGCCTGATAATGCCG,"Intron (Camkmt-201/Camkmt, intron 10 of 10)",17,85090552,85458588,368037,1,Camkmt-201,364225,Camkmt-201,Camkmt,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,41,44,73582,ENSMUSG00000071037,conserved gene and region,17,85454695,85454844,150,*,150,11,0.6,0.818452381,0.073333333,0.000000279,CpGisland,TRUE,U13,Hc-P
6066,cg03678173,0.0000991,0.00000876,11.31963347,4.28E-25,gain,yes,-0.000000651,0.0000149,-0.043728361,0.965149085,neg,ns,0.013210408,0.00435904,3.030577242,0.00264653,pos,ns,2.577323186,-0.000329086,0.000149907,-2.195264417,0.02888568,neg,ns,0.229841283,Psd2,Psd2_Intergenic_upstream,18,35933625,35933674,35933673,35933674,50,-,CCCCACTGAGTTAATCTGCAGTGGCTGGAGGTGACCTTCTGGAGACGGCG,Distal Intergenic,18,35964830,36014712,49883,1,Psd2-201,-31205,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,24,29,74002,ENSMUSG00000024347,mapped to different genes,18,35933670,35933711,42,*,42,10,0.761904762,1.647058824,0.238095238,3.06E-12,CpGisland,TRUE,U13,Hc-P
16291,cg12818872,0.00000264,0.00000226,1.167406862,0.243943244,gain,ns,-0.000000168,0.00000384,-0.043713441,0.965160968,neg,ns,0.001330616,0.001125492,1.182253031,0.238011339,pos,ns,0.623402352,-0.000045,0.0000387,-1.163116908,0.245676598,neg,ns,0.959418113,Lrpprc,Lrpprc_Exon,17,84716601,84716650,84716601,84716602,50,+,CGTAAAGGTCAAGCATTGTGACATACCTTTCAAATAATCCCGCCTAACTT,"Exon (Lrpprc-201/Lrpprc, exon 31 of 38)",17,84705247,84790558,85312,2,Lrpprc-201,73908,Lrpprc-201;Lrpprc-207,Lrpprc;Lrpprc,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,15,72416,ENSMUSG00000024120,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5971,cg05664895,0.0000112,0.00000456,2.462914736,0.014324555,gain,ns,0.000000339,0.00000776,0.043649519,0.965211881,pos,ns,-0.003668207,0.002271975,-1.614545644,0.107426461,neg,ns,0.968888731,-0.0000234,0.0000781,-0.299863196,0.764482474,neg,ns,0.937535064,Slit3,Slit3_Exon,11,35616854,35616903,35616902,35616903,50,-,ACCATGTGGTGGAACGATGGAAACGGAACATGGTTCTGTCAAGCACCGCG,"Exon (Mir218-2-201/Mir218-2-201, exon 1 of 1)",11,35121224,35708507,587284,1,Slit3-201,495630,Slit3-201;Slit3-202,Slit3;Slit3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,21,20564,ENSMUSG00000056427,mapped to different genes,11,35616700,35617001,302,*,302,18,0.602649007,0.686363636,0.059602649,4.00E-10,CpGisland,TRUE,U15,NS
9294,cg24350090,0.000000571,0.00000685,0.083345768,0.933630402,gain,ns,-0.000000508,0.0000116,-0.043622276,0.965233579,neg,ns,0.000323045,0.003409031,0.094761629,0.924565387,pos,ns,0.034062369,-0.0000274,0.000117236,-0.233606985,0.815444292,neg,ns,0.830096878,Gm47213,Gm47213_Intergenic_upstream,9,47973193,47973242,47973241,47973242,50,-,TGGGATGTGACAGGTATTAATAACCCTATTAGCTGCAATCCCATCCGGCG,Distal Intergenic,9,47947880,47948161,282,2,Gm47213-201,-25081,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,7,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23149,cg01316934,-0.0000297,0.00000688,-4.311502448,0.0000218,loss,ns,-0.00000051,0.0000117,-0.043603677,0.965248393,neg,ns,-0.001405732,0.00342458,-0.410482966,0.68173526,neg,ns,0.166384243,0.0000284,0.000117771,0.241378442,0.809421399,pos,ns,0.872729592,Rnf220,Rnf220_Intron,4,117357170,117357219,117357218,117357219,50,+,CTCCTATATCTTTGCTCAGGAAATGGCCTCATAAAAGTGACAGGGAGACG,"Intron (Rnf220-201/Rnf220, intron 2 of 14)",4,117271463,117497052,225590,2,Rnf220-201,139833,Rnf220-201;Rnf220-202;Rnf220-207,Rnf220;Rnf220;Rnf220,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17906,cg05615329,0.00000128,0.00000532,0.239963619,0.810517056,gain,ns,0.000000394,0.00000903,0.043575443,0.965270881,pos,ns,-0.002167517,0.002645681,-0.819266421,0.413263819,neg,ns,0.383772615,0.0000529,0.000091,0.581726372,0.561173777,pos,ns,0.864794666,Irx5,Irx5_Intergenic_downstream,8,92418613,92418662,92418613,92418614,50,-,CGACTGTACCATTTGATCATTAATTTATCACAGTTCTAGCAGTTTGTCTG,Distal Intergenic,8,92357749,92361456,3708,1,Irx5-201,60913,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,11,30,54352,ENSMUSG00000031737,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13131,cg12581465,0.0000134,0.00000872,1.538498258,0.124946891,gain,ns,0.000000646,0.0000148,0.043558186,0.965284626,pos,ns,0.009078724,0.004342495,2.090670168,0.037371801,pos,ns,1.427455974,-0.000252753,0.000149338,-1.69248977,0.091557362,neg,ns,0.748310691,Dnah2,Dnah2_Promoter,11,69548199,69548248,69548247,69548248,50,+,TGCTAAATAGGTAATCAAACATCTCGCTTTGCTAATTACTGCTCAATCCG,Promoter (<=1kb),11,69420809,69549108,128300,2,Dnah2-202,860,Dnah2-201;Dnah2-202;Dnah2-203,Dnah2;Dnah2;Dnah2,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,7,10,327954,ENSMUSG00000005237,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
21989,cg14064625,0.000108341,0.00000814,13.30259715,2.97E-32,gain,yes,0.000000602,0.0000138,0.043484868,0.965343022,pos,ns,0.013718299,0.004053512,3.384299996,0.000805333,pos,ns,3.094024761,0.00000524,0.0001394,0.037591885,0.970037274,pos,ns,0.144324051,Dmrta2,Dmrta2_threeUTR,4,109983202,109983251,109983202,109983203,50,-,CGCTCTCTTTGTTGCTTATGCCGATAAGCATGGGTTTCCTTGGTGCAGTG,3' UTR,4,109978053,109983687,5635,1,Dmrta2-201,5149,Dmrta2-201,Dmrta2,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,13,242620,ENSMUSG00000047143,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
24835,cg01053921,-0.0000109,0.0000077,-1.416279364,0.157697741,loss,ns,0.000000569,0.0000131,0.043469109,0.965355575,pos,ns,0.003696881,0.003833138,0.964452753,0.335570728,pos,ns,0.47421593,-0.0000819,0.000131821,-0.620970883,0.535075082,neg,ns,0.792937051,Zfp362,Zfp362_Exon,4,128777385,128777434,128777433,128777434,50,+,GAGTGAAAGCCTTCTCGCAGCCAGGATGTGGGCACTTGTAGGGTCTGTCG,"Exon (Zfp362-202/Zfp362, exon 7 of 9)",4,128773088,128806045,32958,2,Zfp362-202,28611,Zfp362-202;Zfp362-201;Zfp362-204,Zfp362;Zfp362;Zfp362,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,7,230761,ENSMUSG00000028799,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4402,cg22363783,0.000106022,0.0000116,9.173539968,6.59E-18,gain,yes,-0.000000853,0.0000196,-0.043457601,0.96536474,neg,ns,0.01458352,0.005752203,2.53529306,0.011726592,pos,ns,1.930828196,-0.000293199,0.000197818,-1.48216631,0.139311848,neg,ns,0.068084081,Epha7,Epha7_fiveUTR,4,28813145,28813194,28813193,28813194,50,-,GTGGAGCAAGCGGCCGGTCTGCAGTCGGAGACTTGCAGGCAGCAAACACG,Promoter (<=1kb),4,28813152,28966815,153664,1,Epha7-204,0,Epha7-202;Epha7-201;Epha7-204;Epha7-203;Epha7-208;Epha7-207,Epha7;Epha7;Epha7;Epha7;Epha7;Epha7,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,5,13841,ENSMUSG00000028289,conserved gene and region,4,28813155,28813342,188,*,188,14,0.558510638,0.980625931,0.074468085,3.06E-09,CpGisland,TRUE,U3,Pr-B
12412,cg10067218,0.0000988,0.0000243,4.057952898,0.0000627,gain,ns,-0.0000018,0.0000414,-0.043430848,0.965386049,neg,ns,-0.021699746,0.012115362,-1.791093397,0.074253768,neg,ns,1.129281505,-0.002715954,0.000416646,-6.518607208,2.87E-10,neg,yes,0.85025199,Pgm2,Pgm2_Exon,5,64116321,64116370,64116369,64116370,50,+,AGCCAAATGATCACCTTCACCTTTGCTAATGGAGGCGTGGCCACCATGCG,"Exon (Pgm2-201/Pgm2, exon 13 of 14)",5,64092950,64128351,35402,1,Pgm2-201,23371,Pgm2-201;Pgm2-203,Pgm2;Pgm2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,72157,ENSMUSG00000025791,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9711,cg09792140,-0.00000435,0.00000559,-0.778837312,0.436669658,loss,ns,0.000000412,0.00000949,0.043377774,0.965428321,pos,ns,-0.003696365,0.002780375,-1.329448524,0.184677527,neg,ns,0.73358595,-0.0000581,0.0000956,-0.607550745,0.543930259,neg,ns,0.878532354,Gm7481,Gm7481_Intergenic_upstream,12,50172308,50172357,50172356,50172357,50,+,CTCTTTCTCACACATCCTGCTGAGATTAACCTATAATATTTCTCTGCACG,Distal Intergenic,12,49840757,49841751,995,2,Gm7481-201,-330557,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,27,37,665077,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1186,cg04595822,0.0000161,0.00000916,1.761351483,0.079164708,gain,ns,0.000000672,0.0000156,0.043195869,0.965573207,pos,ns,0.004863159,0.004557072,1.067167478,0.28672658,pos,ns,0.542532045,0.0000226,0.000156717,0.144514872,0.88518782,pos,ns,0.750172659,Gm14512,Gm14512_Intergenic_downstream,X,12000672,12000721,12000720,12000721,50,-,TTGCAAACTGGAAACATTTGCAAGTGGTGATATTTTGCTCTTGCCTGACG,Distal Intergenic,20,11984468,11984697,230,1,Gm14512-201,16253,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,22,22,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9149,cg07814211,-0.0000309,0.00000785,-3.941034913,0.00010031,loss,ns,-0.000000575,0.0000133,-0.04312097,0.965632864,neg,ns,-0.004602505,0.003908308,-1.177620967,0.23985103,neg,ns,0.620058412,-0.0000563,0.000134406,-0.418562729,0.675825563,neg,ns,0.854874277,Gm13469,Gm13469_Intergenic_upstream,2,47223622,47223671,47223670,47223671,50,+,TTGCTTTAGACCACCAAAGAGGCCTAATATGAGTCATTAGCAGAAAACCG,Distal Intergenic,2,46406220,46406569,350,2,Gm13469-201,-817053,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,20,27,383690,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
547,cg14214402,0.0000834,0.0000102,8.180641148,7.36E-15,gain,yes,-0.000000744,0.0000173,-0.042929816,0.965785119,neg,ns,0.006841574,0.005074334,1.348270229,0.178555759,pos,ns,0.748226138,0.000116182,0.000174506,0.665775108,0.506049944,pos,ns,0.418938204,Dlx6,Dlx6_Exon,6,6865146,6865195,6865194,6865195,50,+,AAGCCTCGGACCATTTATTCCAGCCTGCAGCTCCAGGCTTTAAACCATCG,"Exon (Dlx6-203/Dlx6, exon 2 of 4)",6,6863334,6867970,4637,1,Dlx6-203,1812,Dlx6-203;Dlx6-202;Dlx6-201;Dlx6-204,Dlx6;Dlx6;Dlx6;Dlx6,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,36,13396,ENSMUSG00000029754,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
12490,cg13006563,-0.0000275,0.00000887,-3.100286649,0.002110845,loss,ns,-0.000000646,0.0000151,-0.042835027,0.965860618,neg,ns,-0.003259437,0.004414856,-0.738288523,0.46089768,neg,ns,0.336395478,-0.0000776,0.000151827,-0.510946908,0.609751917,neg,ns,0.6800309,Grid2,Grid2_Exon,6,64665893,64665942,64665893,64665894,50,+,CGTGTAAATAGCTTGTGCACAGATGACGACAGCCCCCATAAACAGTTTTC,"Exon (Grid2-201/Grid2, exon 16 of 16)",6,63256027,64668285,1412259,1,Grid2-201,1409866,Grid2-201;Grid2-207,Grid2;Grid2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,10,14804,ENSMUSG00000071424,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26928,cg12255447,-0.00000916,0.00000378,-2.422044636,0.016006737,loss,ns,-0.000000275,0.00000642,-0.042781314,0.965903402,neg,ns,-0.005042566,0.001882052,-2.679292066,0.007771728,neg,ns,2.109482402,0.000193904,0.0000647,2.995870289,0.00295744,pos,ns,0.893960493,Ttc34,Ttc34_Intergenic_upstream,4,154771696,154771745,154771696,154771697,50,+,CGGGCTGAGCTGGGGTTTAATGAAATGCACATTCGTATTCCAAACAAATT,Distal Intergenic,4,154837459,154867125,29667,1,Ttc34-203,-65714,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,6,242800,ENSMUSG00000046637,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7259,cg00298301,-0.00000124,0.00000786,-0.158270518,0.874346688,loss,ns,-0.000000571,0.0000134,-0.042770563,0.965911964,neg,ns,-0.009059341,0.003912931,-2.315231196,0.021252985,neg,ns,1.672580055,0.000192484,0.000134565,1.430413669,0.153605484,pos,ns,0.773451826,Thoc2,Thoc2_threeUTR,X,41812482,41812531,41812482,41812483,50,-,CGATGAGACTGTCCTGTAGAAAATGAATGGAGATGACAGGTGAGCTGGCA,3' UTR,20,41794991,41814246,19256,2,Thoc2-203,1715,Thoc2-203;Thoc2-201;Thoc2-212;Thoc2-208;Thoc2-206;Thoc2-202;Thoc2-211,Thoc2;Thoc2;Thoc2;Thoc2;Thoc2;Thoc2;Thoc2,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,7,331401,ENSMUSG00000037475,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22558,cg02791457,0.0000113,0.00000644,1.74663238,0.081691545,gain,ns,0.000000468,0.0000109,0.042752156,0.965926626,pos,ns,0.001006788,0.003206797,0.313954418,0.753766822,pos,ns,0.122762983,-0.0000119,0.000110281,-0.107724463,0.91428395,neg,ns,0.674018107,Rpl19-ps10,Rpl19-ps10_Intergenic_upstream,7,115132083,115132132,115132083,115132084,50,-,CGTTCCCATTCAGGAAGAATAGGCGGGTAACAATGGTGACCAGCCTCCCT,Distal Intergenic,7,115172056,115172385,330,1,Rpl19-ps10-201,-39973,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,29,668472,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
360,cg26363439,0.00000161,0.00000328,0.490223149,0.624322775,gain,ns,0.000000238,0.00000558,0.042697562,0.965970111,pos,ns,-0.002200562,0.001633832,-1.346871373,0.179005453,neg,ns,0.74713374,0.0000785,0.0000562,1.396930315,0.163433699,pos,ns,0.961497096,Klhl29,Klhl29_Intron,12,5239963,5240012,5239963,5239964,50,+,CGCTAACATGTTTCAACAGTACAGCTGGGGGAGGGCTCCTTTATTCACCG,"Intron (Klhl29-201/Klhl29, intron 2 of 13)",12,5077472,5375682,298211,2,Klhl29-201,135670,Klhl29-201;Klhl29-202,Klhl29;Klhl29,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,23,208439,ENSMUSG00000020627,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21887,cg22354333,0.00000361,0.00000239,1.509891571,0.13208966,gain,ns,-0.000000173,0.00000406,-0.042606872,0.966042346,neg,ns,0.002873294,0.001189943,2.414648109,0.016329163,pos,ns,1.787036065,-0.000105951,0.0000409,-2.589088384,0.010076843,neg,ns,0.029297535,Cdkn2c,Cdkn2c_Intergenic_downstream,4,109657858,109657907,109657858,109657859,50,-,CGCGGAAATTTGAAATATTTGGACAGGAAGAGAAAAGAAAAGAAACCTTA,Distal Intergenic,4,109660876,109665372,4497,2,Cdkn2c-201,7514,Cdkn2c-201;Cdkn2c-202,Cdkn2c;Cdkn2c,0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,13,12580,ENSMUSG00000028551,conserved gene and region,4,109657608,109657861,254,*,254,17,0.661417323,0.652758881,0.066929134,2.23E-10,CpGisland,TRUE,U3,Pr-B
14213,cg18310068,-0.00000132,0.000000534,-2.465102784,0.014239087,loss,ns,3.87E-08,0.000000907,0.042602017,0.966046214,pos,ns,0.000291026,0.000265841,1.09473868,0.274480976,pos,ns,0.561487751,-0.00002,0.00000914,-2.18231581,0.029836594,neg,ns,0.010150735,Mnt,Mnt_Intron,11,74831985,74832034,74831985,74831986,50,+,CGGAGGCGGCCTTTGCAGAATGAAATGACATCGCGTGTCTTATGATCCTG,"Intron (Mnt-201/Mnt, intron 1 of 5)",11,74830920,74845725,14806,1,Mnt-201,1065,Mettl16-205;Mnt-201;Mnt-203,Mettl16;Mnt;Mnt,61155;0;-4292,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,17,17428,ENSMUSG00000000282,conserved gene and region,11,74831764,74832137,374,*,374,30,0.628342246,0.846536895,0.080213904,3.52E-20,CpGisland,TRUE,U1,Pr-A
16366,cg06744585,-0.0000378,0.00000809,-4.66949223,0.0000045,loss,ns,-0.000000584,0.0000137,-0.04249324,0.966132856,neg,ns,-0.008865865,0.004027985,-2.201066897,0.028468139,neg,ns,1.545640924,0.000476254,0.000138522,3.438106469,0.000665881,pos,ns,0.91876102,Nfix,Nfix_Exon,8,84772293,84772342,84772341,84772342,50,-,TCGATGAACGGGTGGAACTCATCCTGCAGGCGGCAAGCCGGGAGCATGCG,"Exon (Nfix-204/Nfix, exon 2 of 11)",8,84704712,84773396,68685,2,Nfix-204,1054,Nfix-204;Nfix-201;Nfix-202;Nfix-203;Nfix-205,Nfix;Nfix;Nfix;Nfix;Nfix,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,20,49,18032,ENSMUSG00000001911,conserved gene but different region,8,84771960,84772433,474,*,474,36,0.61814346,0.805285512,0.075949367,3.03E-23,CpGisland,TRUE,U13,Hc-P
1361,cg15440561,0.0000279,0.00000493,5.659943425,3.45E-08,gain,yes,0.000000354,0.00000838,0.042217096,0.966352812,pos,ns,0.008751414,0.00245607,3.563177997,0.000424045,pos,ns,3.372588154,-0.000306276,0.0000845,-3.626110569,0.000336257,neg,ns,0.06738762,Sox1,Sox1_Intron,8,12431346,12431395,12431346,12431347,50,+,CGACGCTCTTTTGTCTGATAACTAATTTGAGTTAATGCGATCTTTATGTA,"Intron (Sox1ot-201/Sox1ot-201, intron 7 of 8)",8,12395295,12400126,4832,1,Sox1-201,36051,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,15,20664,ENSMUSG00000096014,mapped to different genes,8,12431094,12431559,466,*,466,37,0.603004292,0.882846902,0.079399142,1.38E-24,CpGisland,TRUE,U13,Hc-P
1218,cg00853576,0.0000535,0.00000967,5.529784676,6.82E-08,gain,yes,0.000000694,0.0000164,0.042214261,0.96635507,pos,ns,0.022349069,0.004814202,4.642320375,0.00000509,pos,ns,5.292946211,-0.00039956,0.00016556,-2.413387239,0.016384695,neg,ns,0.248202272,Bcor,Bcor_Intron,X,12068321,12068370,12068369,12068370,50,+,AGAAAATGGCACACGTCATAAAAAGAGACCAATTTATAGAACTGGCACCG,"Intron (Bcor-202/Bcor, intron 1 of 14)",20,12036740,12080553,43814,2,Bcor-202,12183,Bcor-202;Bcor-203;Bcor-204;Bcor-206;Bcor-201;Bcor-207;Bcor-205,Bcor;Bcor;Bcor;Bcor;Bcor;Bcor;Bcor,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,56,74,71458,ENSMUSG00000040363,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10874,cg24633967,-0.00000515,0.00000502,-1.025319991,0.306011626,loss,ns,0.000000359,0.00000853,0.042120555,0.96642971,pos,ns,0.000823704,0.002497553,0.329804316,0.74177057,pos,ns,0.129730402,-0.000175912,0.0000859,-2.048090511,0.04139328,neg,ns,0.872589687,B230219D22Rik,B230219D22Rik_threeUTR,13,55703331,55703380,55703331,55703332,50,+,CGCTGTCCTCTGCTGTAAAAAGTCTGAATAGATACTGTGTATGTTTTTAT,3' UTR,13,55693124,55703500,10377,1,B230219D22Rik-201,10207,B230219D22Rik-201,B230219D22Rik,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,2,78521,ENSMUSG00000045767,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6907,cg02690638,0.000224532,0.0000164,13.65688368,1.44E-33,gain,yes,-0.00000118,0.0000279,-0.042109074,0.966438855,neg,ns,0.028997008,0.008182809,3.543649592,0.00045539,pos,ns,3.341616702,-0.000562231,0.000281406,-1.997935765,0.04659701,neg,ns,0.251339762,Nrg3,Nrg3_Exon,14,39472521,39472570,39472521,39472522,50,-,CGGAGCCCACCACGATCCATTTGAGAAGCATGAGGCTGAGCCCCAGGCCG,Promoter (<=1kb),14,38368952,39473088,1104137,2,Nrg3-201,518,Nrg3-201;Nrg3-202;Nrg3-203;Nrg3-204,Nrg3;Nrg3;Nrg3;Nrg3,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,18183,ENSMUSG00000041014,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
18045,cg12843514,0.0000516,0.0000137,3.771844723,0.000194066,gain,ns,0.000000977,0.0000232,0.042095751,0.966449467,pos,ns,0.016893342,0.006802394,2.483440797,0.013540369,pos,ns,1.868369511,-0.000409155,0.000233934,-1.749019271,0.081277376,neg,ns,0.664428461,Pola1,Pola1_Intron,X,93409227,93409276,93409227,93409228,50,+,CGATCTGCATCTCAAGGTTGCATAATAAGTCAATATATGTAAATCTTTAC,"Intron (Pola1-201/Pola1, intron 35 of 36)",20,93304767,93632155,327389,2,Pola1-201,222879,Pola1-201,Pola1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,59,62,18968,ENSMUSG00000006678,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23968,cg10473157,-0.00000454,0.00000219,-2.067801387,0.039488049,loss,ns,-0.000000157,0.00000373,-0.042084093,0.966458753,neg,ns,-0.000283296,0.00109222,-0.259376097,0.79551723,neg,ns,0.099350409,-0.0000157,0.0000376,-0.418446683,0.6759103,neg,ns,0.94565017,Erp29,Erp29_threeUTR,5,121447239,121447288,121447287,121447288,50,-,GTGTCGAACTTCACCAAGACGAACTTGCTTTTGGGAATGACCTGAGGGCG,3' UTR,5,121428590,121452487,23898,2,Erp29-204,5199,Erp29-204;Erp29-203;Erp29-201;Erp29-202;Naa25-201;Naa25-204;Tmem116-204,Erp29;Erp29;Erp29;Erp29;Naa25;Naa25;Tmem116,0;0;0;0;0;7821;-4605,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,11,11,67397,ENSMUSG00000029616,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16105,cg26939395,0.00000215,0.0000115,0.187564198,0.851340999,gain,ns,-0.000000819,0.0000195,-0.042032074,0.966500188,neg,ns,-0.004512571,0.005708454,-0.790506628,0.429836267,neg,ns,0.366696944,0.000102614,0.000196313,0.522706213,0.601552075,pos,ns,0.745513215,Cyp26b1,Cyp26b1_Intergenic_downstream,6,84410321,84410370,84410369,84410370,50,+,CTAAAAAGGCATTGCTCATTCTGACACATATACGACGTGGCCAGGACTCG,Distal Intergenic,6,84571414,84587680,16267,2,Cyp26b1-205,177310,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,9,232174,ENSMUSG00000063415,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13062,cg27593991,-0.0000545,0.0000103,-5.308192171,0.000000211,loss,yes,0.000000733,0.0000174,0.042013922,0.966514646,pos,ns,-0.002899749,0.005109644,-0.567505092,0.570781814,neg,ns,0.243529872,0.000236493,0.00017572,1.345850067,0.179334309,pos,ns,0.78326081,Tcf4,Tcf4_fiveUTR,18,69347285,69347334,69347333,69347334,50,+,GTGATTTTGCTAAAATGCATCACCAACAGCGAATGGCTGCCTTAGGGACG,Promoter (<=1kb),18,69347299,69683198,335900,1,Tcf4-253,0,Tcf4-259;Tcf4-201;Tcf4-207;Tcf4-210;Tcf4-240;Tcf4-254;Tcf4-246;Tcf4-206;Tcf4-202;Tcf4-257;Tcf4-232;Tcf4-215;Tcf4-248;Tcf4-231;Tcf4-205;Tcf4-253;Tcf4-244;Tcf4-233;Tcf4-238;Tcf4-245;Tcf4-249;Tcf4-219;Tcf4-235;Tcf4-227,Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,12,66,21413,ENSMUSG00000053477,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
23996,cg06857737,-0.0000213,0.00000721,-2.953794835,0.003379129,loss,ns,-0.000000513,0.0000123,-0.041895832,0.96660871,neg,ns,-0.002102181,0.003589537,-0.585641241,0.558542722,neg,ns,0.252943602,-0.0000447,0.000123444,-0.362154221,0.717483538,neg,ns,0.88334876,Gm28591,Gm28591_Intergenic_upstream,1,121795460,121795509,121795508,121795509,50,+,GATTAGTTTGCCGAAGATCACATTAAAATCCCATTAAAGAGACAGTTCCG,Distal Intergenic,1,121645667,121645849,183,2,Gm28591-201,-149611,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10731,cg12315430,-0.000084,0.00000862,-9.752028783,9.01E-20,loss,yes,-0.000000611,0.0000146,-0.041741625,0.966731542,neg,ns,-0.011653802,0.004289131,-2.717054583,0.006956683,neg,ns,2.157597767,0.000101496,0.000147503,0.68809449,0.491907836,pos,ns,0.750994243,Sf3b1,Sf3b1_Exon,1,55019334,55019383,55019382,55019383,50,-,CCCACTCCTTGAGCTTCATCAAGAGCTGCCTTCTTGCCTTGAATTTCTCG,"Exon (Sf3b1-201/Sf3b1, exon 2 of 25)",1,54985169,55027481,42313,2,Sf3b1-201,8098,Sf3b1-201;Sf3b1-203;Sf3b1-205;Sf3b1-208;Sf3b1-206;Sf3b1-204,Sf3b1;Sf3b1;Sf3b1;Sf3b1;Sf3b1;Sf3b1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,7,81898,ENSMUSG00000025982,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4465,cg26230100,-0.0000235,0.00000739,-3.183425326,0.001603221,loss,ns,-0.000000521,0.0000126,-0.041521412,0.966906953,neg,ns,-0.003083166,0.003678044,-0.838262475,0.402529168,neg,ns,0.395202644,-0.000225069,0.000126488,-1.779372153,0.076158442,neg,ns,0.918876196,Epha7,Epha7_Exon,4,28961439,28961488,28961439,28961440,50,-,CGAAACCCAAATAGTCTGAAAACTCCCCTGGGAACTTGTAGTAGGTAAGA,"Exon (Epha7-201/Epha7, exon 15 of 17)",4,28813131,28967499,154369,1,Epha7-201,148308,Epha7-201;Epha7-204;Epha7-203,Epha7;Epha7;Epha7,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,5,13841,ENSMUSG00000028289,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4999,cg21318291,-0.0000656,0.0000109,-6.029308804,4.68E-09,loss,yes,0.000000768,0.0000185,0.041512005,0.966914446,pos,ns,-0.002519236,0.005417503,-0.46501795,0.64224507,neg,ns,0.19229922,0.0000604,0.000186307,0.32444617,0.745819085,pos,ns,0.894906681,Dlg1,Dlg1_Exon,16,31754936,31754985,31754936,31754937,50,+,CGCTGGCAGCAGATAGTTGCATTTTTCACTCGAAGACACAGCTTTATTGA,"Exon (Dlg1-204/Dlg1, exon 1 of 23)",16,31663443,31875129,211687,1,Dlg1-206,91493,Dlg1-206;Dlg1-205;Dlg1-203;Dlg1-209;Dlg1-202;Dlg1-201;Dlg1-215;Dlg1-204,Dlg1;Dlg1;Dlg1;Dlg1;Dlg1;Dlg1;Dlg1;Dlg1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,8,13383,ENSMUSG00000022770,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11142,cg14312965,-0.0000057,0.0000047,-1.211269207,0.226714794,loss,ns,0.000000332,0.00000799,0.041501003,0.96692321,pos,ns,-0.00000854,0.002341294,-0.003645722,0.997093486,neg,ns,0.001264121,-0.0000779,0.0000805,-0.967735872,0.33393068,neg,ns,0.886932133,Actl7b,Actl7b_fiveUTR,4,56740150,56740199,56740198,56740199,50,-,TGCTGACCCAGAGCTGTTGGAAGGCCTGCAGGGAGGCCAGGATGGAACCG,5' UTR,4,56740005,56741443,1439,2,Actl7b-201,1244,Actl7a-201;Actl7b-201;Gm26657-201,Actl7a;Actl7b;Gm26657,0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,1,11471,ENSMUSG00000070980,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16422,cg20567607,0.000000452,0.000000751,0.602069386,0.547568044,gain,ns,5.29E-08,0.00000128,0.041448279,0.966965207,pos,ns,-0.000434558,0.000373989,-1.161955981,0.246147159,neg,ns,0.608805173,0.00000251,0.0000129,0.195500444,0.845129268,pos,ns,0.983207968,Ric8b,Ric8b_Exon,10,84958034,84958083,84958034,84958035,50,+,CGTGTAATGGCAGCTGTCCTTCGTCATTGTTTACTAATCGTAGGTCCAAC,"Exon (Ric8b-201/Ric8b, exon 4 of 10)",10,84917616,85016447,98832,1,Ric8b-201,40418,Ric8b-201;Ric8b-203;Ric8b-202;Ric8b-205,Ric8b;Ric8b;Ric8b;Ric8b,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,11,14,237422,ENSMUSG00000035620,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24030,cg10400841,-0.0000228,0.00000777,-2.940468288,0.003523746,loss,ns,0.000000546,0.0000132,0.041380347,0.967019318,pos,ns,-0.009141415,0.003866689,-2.364145346,0.018687964,neg,ns,1.728438022,-0.0000276,0.000132975,-0.207225871,0.83596952,neg,ns,0.909348619,Cux2,Cux2_Intron,5,122033064,122033113,122033064,122033065,50,+,CGTCCCCATTAAGTGACTCTGGGCAGATGACATCAAATTCATTTCAAAAG,"Intron (Cux2-202/Cux2, intron 2 of 22)",5,121856366,122049851,193486,2,Cux2-202,16738,Cux2-202;Cux2-201;Cux2-207;Cux2-203,Cux2;Cux2;Cux2;Cux2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,21,13048,ENSMUSG00000042589,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23275,cg24551262,-0.00000345,0.00000214,-1.612493078,0.107872221,loss,ns,0.00000015,0.00000364,0.041294441,0.967087748,pos,ns,-0.0000885,0.001065526,-0.083101738,0.933824278,neg,ns,0.029734839,0.0000135,0.0000366,0.367221121,0.713704643,pos,ns,0.943438018,Eri3,Eri3_Intron,4,117645205,117645254,117645253,117645254,50,+,ATATTAAAGGCGCTAATGGCAAAGCTCCCTGTTACACAGGGGGCCACCCG,"Intron (Eri3-201/Eri3, intron 7 of 8)",4,117550365,117674297,123933,1,Eri3-201,94840,Eri3-201;Eri3-206;Eri3-203,Eri3;Eri3;Eri3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,82,97,140546,ENSMUSG00000033423,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22076,cg03455420,-0.000000193,0.000000348,-0.553071206,0.580613268,loss,ns,-2.44E-08,0.000000592,-0.04123802,0.967132691,neg,ns,0.000390722,0.000173335,2.254150192,0.024884752,pos,ns,1.604066689,-0.0000123,0.00000596,-2.056601475,0.040561231,neg,ns,0.008696088,Wdr20,Wdr20_Exon,12,110738211,110738260,110738211,110738212,50,-,CGGCGACCGCCTCTGCTTCAATGTGGGCCGGGAGCTGTACTTCTATATCT,Promoter (<=1kb),12,110737944,110804238,66295,1,Wdr20-205,267,Wdr20-205;Wdr20-204;Wdr20-203;Wdr20-201;Wdr20-202;Wdr20-207,Wdr20;Wdr20;Wdr20;Wdr20;Wdr20;Wdr20,0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,8,69641,ENSMUSG00000037957,conserved gene and region,12,110737489,110738785,1297,*,1297,129,0.68080185,0.867167335,0.099460293,3.23E-97,CpGisland,TRUE,U1,Pr-A
4195,cg06088917,-0.00000311,0.00000218,-1.42689836,0.1546156,loss,ns,-0.000000153,0.00000371,-0.041228934,0.967139928,neg,ns,0.002407226,0.001085662,2.217287697,0.027328507,pos,ns,1.563384094,-0.0000762,0.0000373,-2.042112658,0.041986333,neg,ns,0.949846379,Brd3,Brd3_threeUTR,2,27445780,27445829,27445780,27445781,50,-,CGGCACTAAAAAGTTTAAGAAAAGTTACGGTAAACTTGCATGCACATCAT,3' UTR,2,27445579,27475398,29820,2,Brd3-201,29569,Brd3-201;Brd3-202;Brd3-203;Brd3-210;Brd3-206;Brd3-209;Brd3os-202;Brd3os-201,Brd3;Brd3;Brd3;Brd3;Brd3;Brd3;Brd3os;Brd3os,0;0;0;0;0;0;3456;3277,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,2,67382,ENSMUSG00000026918,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24472,cg00175324,-0.0000112,0.00000379,-2.951646594,0.003402068,loss,ns,-0.000000263,0.00000644,-0.040873976,0.967422676,neg,ns,-0.001737108,0.001885718,-0.921191529,0.357666764,neg,ns,0.446521414,-0.000100913,0.0000648,-1.556111073,0.12070197,neg,ns,0.792073854,Atxn2l,Atxn2l_threeUTR,7,126492103,126492152,126492151,126492152,50,+,GAAGAGACATAGATCACTCTTCCCTCCACTCATGGAGGTCTCAGGTCGCG,3' UTR,7,126491708,126503437,11730,2,Atxn2l-201,11285,Atxn2l-201;Atxn2l-203;Atxn2l-206;Atxn2l-205;Atxn2l-202;Tufm-201;Tufm-202;Tufm-203;Tufm-204;Tufm-205;Tufm-206,Atxn2l;Atxn2l;Atxn2l;Atxn2l;Atxn2l;Tufm;Tufm;Tufm;Tufm;Tufm;Tufm,0;0;0;0;0;4742;4725;4474;3489;3417;2732,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,8,13,233871,ENSMUSG00000032637,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
14255,cg17967826,0.00000289,0.0000121,0.238492209,0.811656931,gain,ns,-0.000000841,0.0000206,-0.040862995,0.967431423,neg,ns,0.013300342,0.00602629,2.207053049,0.028042866,pos,ns,1.55217761,-0.000488036,0.000207244,-2.354889698,0.019151343,neg,ns,0.78848403,Gnaz,Gnaz_Exon,10,74991591,74991640,74991591,74991592,50,-,CGGCGGCTTCAACCTGGAGGCCTGCAAGGAGTACAAGCCCCTCATCATCT,"Exon (Gnaz-201/Gnaz, exon 3 of 4)",10,74967177,75016907,49731,1,Gnaz-201,24414,Gnaz-201;Gnaz-203;Gnaz-202;Rsph14-207;Rsph14-201;Rsph14-206;Rsph14-205;Rsph14-204,Gnaz;Gnaz;Gnaz;Rsph14;Rsph14;Rsph14;Rsph14;Rsph14,0;24382;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,Exon,1,1,14687,ENSMUSG00000040009,mapped to different genes,10,74991196,74991727,532,*,532,35,0.620300752,0.687566929,0.065789474,1.72E-20,CpGisland,TRUE,U11,Tr-P
1903,cg25383386,0.0000017,0.0000016,1.062048693,0.289040245,gain,ns,0.000000111,0.00000272,0.040858595,0.967434928,pos,ns,0.000757628,0.000797801,0.949645788,0.343032012,pos,ns,0.464665349,-0.0000395,0.0000274,-1.438126842,0.151406799,neg,ns,0.966551445,Meis3,Meis3_Exon,7,16178965,16179014,16178965,16178966,50,-,CGACAACTTCTGTCACCGCTACATCACCTGCCTCAAGGGAAAGATGCCCA,"Exon (Meis3-205/Meis3, exon 6 of 13)",7,16175275,16186504,11230,1,Meis3-205,3690,Meis3-203;Meis3-208;Meis3-205;Meis3-202;Meis3-201;Meis3-207;Meis3-209;Meis3-204,Meis3;Meis3;Meis3;Meis3;Meis3;Meis3;Meis3;Meis3,3875;3826;0;0;0;0;1219;-28,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,Exon,3,3,17537,ENSMUSG00000041420,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25053,cg15980492,-0.00000543,0.00000192,-2.830254998,0.00495475,loss,ns,0.000000132,0.00000326,0.040563903,0.967669673,pos,ns,0.000104633,0.000954281,0.1096464,0.912760754,pos,ns,0.039643041,-0.00005,0.0000328,-1.524872782,0.128310352,neg,ns,0.03217086,Srsf4,Srsf4_Exon,4,131873820,131873869,131873868,131873869,50,-,GCGCTTCTTTAAGGGCTACGGGAAGATCCTGGAGGTGGATCTGAAGAACG,Promoter (<=1kb),4,131873617,131901706,28090,1,Srsf4-202,203,Srsf4-202;Srsf4-203,Srsf4;Srsf4,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,57317,ENSMUSG00000028911,conserved gene and region,4,131873392,131874484,1093,*,1093,132,0.705397987,0.975101379,0.120768527,7.27E-112,CpGisland,TRUE,U1,Pr-A
1597,cg01602213,-0.0000097,0.00000271,-3.57561131,0.000405155,loss,ns,-0.000000187,0.00000461,-0.040541299,0.967687679,neg,ns,-0.000918873,0.001350885,-0.680200683,0.496885061,neg,ns,0.30374406,-0.0000439,0.0000465,-0.944357495,0.345722425,neg,ns,0.961793999,Zfp521,Zfp521_Intron,18,13810367,13810416,13810367,13810368,50,+,CGCCATCCTGAGAGCTGTGAGATACCTTGCAATCTTGGCAGGTAGCTACT,"Intron (Zfp521-201/Zfp521, intron 5 of 7)",18,13687013,13972787,285775,2,Zfp521-201,162371,Zfp521-201;Zfp521-205;Zfp521-204,Zfp521;Zfp521;Zfp521,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,81,225207,ENSMUSG00000024420,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17042,cg19222351,0.00000735,0.00000582,1.263813385,0.207246536,gain,ns,0.000000401,0.00000989,0.040532046,0.967695051,pos,ns,-0.002240684,0.002896457,-0.773594705,0.439760015,neg,ns,0.356784261,0.0000894,0.0000996,0.897514634,0.37014087,pos,ns,0.794670957,Gm28877,Gm28877_Intergenic_upstream,9,88069084,88069133,88069132,88069133,50,+,TCCATAAGTTCTCCATTAACAGTTTCACAGCAGAAGGCGCCATTGGTCCG,Distal Intergenic,9,88039089,88039692,604,2,Gm28877-201,-29392,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,7,102639108,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20308,cg02873393,0.0000746,0.0000131,5.706463734,0.000000027,gain,yes,-0.0000009,0.0000222,-0.040520224,0.967704468,neg,ns,0.002120309,0.006508362,0.325782275,0.744808884,pos,ns,0.127955152,-0.000198301,0.000223822,-0.885977254,0.376316532,neg,ns,0.221915443,Hoxc5,Hoxc5_Exon,15,102993874,102993923,102993874,102993875,50,-,CGTATTTTATCACTACCTATAGAAAGAAATCCTGCTTTGAGAGTATTTGT,"Exon (Hoxc8-202/Hoxc8, exon 1 of 1)",15,102967443,103015676,48234,1,Hoxc5-202,26431,Hoxc5-202;Hoxc6-202;Hoxc8-201;Hoxc8-202,Hoxc5;Hoxc6;Hoxc8;Hoxc8,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,Exon,72,134,15424,ENSMUSG00000022485,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
23544,cg17800617,0.0000689,0.00000488,14.12512402,2.56E-35,gain,yes,-0.000000336,0.00000828,-0.04050307,0.967718132,neg,ns,0.00548809,0.002427024,2.261242578,0.024437034,pos,ns,1.611951506,0.000038,0.0000835,0.455039466,0.649399358,pos,ns,0.171407818,Sp8,Sp8_Promoter,12,118840937,118840986,118840985,118840986,50,+,TGGCCATTATGGCCTGAAATGGGCCAGGTTTGAAGCGAGCTTCCTGCGCG,Promoter (5-6kb),12,118846329,118852576,6248,1,Sp8-201,-5343,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,27,29,320145,ENSMUSG00000048562,conserved gene and region,12,118840863,118841021,159,*,159,10,0.503144654,0.999371465,0.062893082,0.00000467,CpGisland,TRUE,U13,Hc-P
26730,cg23018843,-0.00000239,0.00000366,-0.652172775,0.514772985,loss,ns,0.000000251,0.00000622,0.040387805,0.967809951,pos,ns,-0.000679705,0.0018221,-0.373033764,0.709378253,neg,ns,0.14912213,-0.0000345,0.0000627,-0.549947348,0.582751488,neg,ns,0.952704436,Huwe1,Huwe1_Exon,X,151907314,151907363,151907314,151907315,50,+,CGACGATGGCTCTGAGATGGAATTGGATGAGGATTATCCTGATATGAACG,"Exon (Huwe1-201/Huwe1, exon 54 of 83)",20,151803327,151935417,132091,1,Huwe1-201,103987,Huwe1-201;Huwe1-202;Huwe1-219;Huwe1-208;Huwe1-215,Huwe1;Huwe1;Huwe1;Huwe1;Huwe1,0;0;0;-1482;-1482,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,22,28,59026,ENSMUSG00000025261,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11973,cg23141317,-0.00000839,0.00000659,-1.27321736,0.203894849,loss,ns,0.000000452,0.0000112,0.040352655,0.967837951,pos,ns,0.002921,0.00327983,0.890594905,0.373837192,pos,ns,0.427317494,-0.000252032,0.000112793,-2.234460326,0.026165314,neg,ns,0.837528674,Ablim3,Ablim3_Exon,18,61819024,61819073,61819072,61819073,50,+,GTTGGAGTGGAGGACCTCACATCTAACTGGCTATGGTATGGAGAGCTCCG,"Exon (Ablim3-202/Ablim3, exon 14 of 24)",18,61799392,61911823,112432,2,Ablim3-202,92750,Ablim3-202;Ablim3-201,Ablim3;Ablim3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,319713,ENSMUSG00000032735,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19408,cg14517089,-0.0000453,0.0000191,-2.370913216,0.0183554,loss,ns,0.00000131,0.0000325,0.040319533,0.967864335,pos,ns,-0.006048125,0.00951187,-0.63585018,0.525343206,neg,ns,0.279556879,0.0000195,0.000327112,0.059517506,0.952578272,pos,ns,0.282063422,Dusp6,Dusp6_Promoter,10,99262923,99262972,99262923,99262924,50,+,CGAAGTGTGAACTCTCAACAGAAGGAAACATGAGACAACTGAAGTGCCCT,Promoter (<=1kb),10,99263231,99267488,4258,1,Dusp6-201,-259,Dusp6-201;Dusp6-204;Dusp6-202;Dusp6-203,Dusp6;Dusp6;Dusp6;Dusp6,0;0;0;-2669,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,6,8,67603,ENSMUSG00000019960,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
24671,cg02933351,0.00000606,0.00000367,1.650396306,0.099874652,gain,ns,-0.000000251,0.00000624,-0.040299778,0.967880072,neg,ns,0.002868946,0.0018283,1.569187876,0.11762429,pos,ns,0.929502985,-0.000199332,0.0000629,-3.170290102,0.001675079,neg,ns,0.930378082,Tmem163,Tmem163_Exon,1,127552781,127552830,127552781,127552782,50,+,CGCTGTACCTCATAACGGAGACAGCTAAAAAGAAAGAAAATATTATTCAG,"Exon (Tmem163-201/Tmem163, exon 3 of 9)",1,127486546,127678096,191551,2,Tmem163-201,125266,Tmem163-201;Tmem163-203;Tmem163-205,Tmem163;Tmem163;Tmem163,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,72160,ENSMUSG00000026347,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20115,cg18291097,0.000023,0.00000516,4.462844972,0.0000113,gain,ns,-0.000000353,0.00000877,-0.040291282,0.96788684,neg,ns,0.005520496,0.00256912,2.148788564,0.032425341,pos,ns,1.489115447,-0.000126499,0.0000884,-1.431764807,0.153218582,neg,ns,0.011220583,Atp5g2,Atp5g2_fiveUTR,15,102672315,102672364,102672315,102672316,50,+,CGCTGAAAGCCCACGGAGCAATTTCCCGGGACCCCGAGCGACGCCATTAC,Promoter (<=1kb),15,102665801,102672352,6552,2,Atp5g2-203,0,Atp5g2-202;Atp5g2-201;Atp5g2-204;Atp5g2-203,Atp5g2;Atp5g2;Atp5g2;Atp5g2,-1188;-4566;-4572;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,8,18,67942,ENSMUSG00000062683,mapped to different genes,15,102672078,102672489,412,*,412,37,0.621359223,0.940117176,0.089805825,1.33E-26,CpGisland,TRUE,U1,Pr-A
27878,cg03587526,0.00000143,0.0000024,0.594214593,0.552801982,gain,ns,-0.000000163,0.00000408,-0.04010148,0.968038036,neg,ns,-0.000284276,0.001193894,-0.238108277,0.811954423,neg,ns,0.090468348,0.0000259,0.0000411,0.63056894,0.528786982,pos,ns,0.95704075,Smyd2,Smyd2_Intergenic_upstream,1,189945416,189945465,189945416,189945417,50,-,CGTTCATGGAAAATCACATGCCGCTCACATGAGGGACCAAGATCTTTTTT,Distal Intergenic,1,189880492,189922363,41872,2,Smyd2-201,-23102,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,7,226830,ENSMUSG00000026603,conserved gene and region,1,189945264,189945438,175,*,175,14,0.542857143,1.088888889,0.08,1.18E-09,CpGisland,TRUE,U15,NS
22835,cg26055832,-0.0000165,0.00000417,-3.958655307,0.0000935,loss,ns,0.000000284,0.00000708,0.040100962,0.968038448,pos,ns,-0.004307331,0.002073951,-2.076872347,0.038636706,neg,ns,1.412999908,0.00000282,0.0000713,0.039531698,0.968491929,pos,ns,0.805228658,Meis2,Meis2_Intron,2,116001824,116001873,116001872,116001873,50,-,AAGAGCTGGCAGATTAATTTTATTGACATTTCCATTTTCACTGCAATGCG,"Intron (Meis2-201/Meis2, intron 7 of 11)",2,115863064,116065047,201984,2,Meis2-201,63174,Meis2-201;Meis2-203;Meis2-205;Meis2-206;Meis2-204;Meis2-202;Meis2-216;Meis2-217;Meis2-213,Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,45,97,17536,ENSMUSG00000027210,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20671,cg19334761,-0.0000684,0.0000101,-6.745263803,7.49E-11,loss,yes,0.000000688,0.0000172,0.039924943,0.968178665,pos,ns,-0.011560064,0.005049672,-2.289270048,0.022735689,neg,ns,1.643291884,0.0000586,0.000173658,0.337451181,0.736005181,pos,ns,0.747831451,Kansl1,Kansl1_fiveUTR,11,104425180,104425229,104425180,104425181,50,-,CGTCAGTGAGAGCGGGCGCCATCGCAGCCATTCAGCACAGAGAGACAGGA,5' UTR,11,104333229,104442291,109063,2,Kansl1-205,17062,Kansl1-205;Kansl1-204;Kansl1-201;Kansl1-203;Kansl1-206,Kansl1;Kansl1;Kansl1;Kansl1;Kansl1,0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,11,76719,ENSMUSG00000018412,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
22787,cg20570891,0.0000934,0.0000186,5.032951262,0.00000082,gain,yes,0.00000126,0.0000315,0.039833345,0.968251633,pos,ns,-0.016370225,0.009236092,-1.772418967,0.077307118,neg,ns,1.111780515,0.000438007,0.000317628,1.378993028,0.168891033,pos,ns,0.650359196,Dmbx1,Dmbx1_Promoter,4,115946142,115946191,115946190,115946191,50,+,CAGGGGCACTGGCTAAGCTTGCAAAGCTATGATTAAGAGTTATGGTGGCG,Promoter (6-7kb),4,115915120,115939926,24807,2,Dmbx1-202,-6216,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,9,42,140477,ENSMUSG00000028707,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
11029,cg13313667,0.00000259,0.00000834,0.310482978,0.756402344,gain,ns,-0.000000559,0.0000142,-0.039432286,0.968571122,neg,ns,0.002310616,0.004151306,0.556599644,0.578202571,pos,ns,0.237919982,-0.000322235,0.000142763,-2.2571312,0.024695709,neg,ns,0.534707989,Gm13518,Gm13518_Intergenic_downstream,2,56316491,56316540,56316539,56316540,50,+,CTGCAGGTCACGAACATCAAATGCCACTAACACTTCCAGCTGTGACCACG,Distal Intergenic,2,56039853,56040085,233,1,Gm13518-201,276638,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,37,37,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16456,cg13136944,-0.000007,0.00000401,-1.744475882,0.082067216,loss,ns,-0.000000268,0.00000682,-0.039321419,0.968659441,neg,ns,0.001289537,0.0019979,0.645445986,0.519115642,pos,ns,0.284735885,-0.0000635,0.0000687,-0.924895687,0.35573957,neg,ns,0.905353243,Trir,Trir_Exon,8,85029556,85029605,85029556,85029557,50,+,CGGGAACAAACTAGCCCTCAAGACGGGAATAGTAGCCAAGAAGCAGAAGA,"Exon (Trir-201/Trir, exon 2 of 3)",8,85026823,85030286,3464,1,Trir-201,2733,Asna1-201;Asna1-202;Asna1-204;Asna1-203;Trir-201,Asna1;Asna1;Asna1;Asna1;Trir,-4275;-4290;-4688;-4293;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,68544,ENSMUSG00000041203,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21641,cg08598431,0.000016,0.00000529,3.035364566,0.002606083,gain,ns,-0.000000353,0.00000898,-0.039248766,0.968717318,neg,ns,0.002982687,0.002631527,1.133443721,0.257903762,pos,ns,0.588542322,-0.000196896,0.0000905,-2.175690302,0.03033353,neg,ns,0.167278295,Zfhx3,Zfhx3_fiveUTR,8,108714813,108714862,108714861,108714862,50,+,TGAGTTTCAAATTAACCTTCCGCTTTGTTGCTGTGTAATGTGGATCCCCG,5' UTR,8,107942644,108961630,1018987,1,Zfhx3-204,772169,Zfhx3-204;Zfhx3-202;Zfhx3-201,Zfhx3;Zfhx3;Zfhx3,0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,11,177,11906,ENSMUSG00000038872,conserved gene but different region,8,108714612,108715434,823,*,823,88,0.725394897,0.812839506,0.106925881,1.42E-69,CpGisland,TRUE,U1,Pr-A
24501,cg10278760,0.0000122,0.00000301,4.046836764,0.0000656,gain,ns,0.0000002,0.00000511,0.039173744,0.968777083,pos,ns,0.002855094,0.001498405,1.905422862,0.057650126,pos,ns,1.239199737,-0.0000465,0.0000515,-0.903059756,0.36719535,neg,ns,0.053470885,Kcna1,Kcna1_fiveUTR,6,126644782,126644831,126644830,126644831,50,+,GCTCGGTCCATTTCTGGGCGCTGCAAGATCAGCAGAAACCTGAGAAAGCG,Promoter (<=1kb),6,126640397,126644796,4400,2,Kcna1-201,0,Kcna1-201;Kcna1-202;Kcna1-203,Kcna1;Kcna1;Kcna1,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,12,16485,ENSMUSG00000047976,conserved gene but different region,6,126644089,126644899,811,*,811,68,0.638717633,0.822711541,0.083847102,2.88E-46,CpGisland,TRUE,U3,Pr-B
6913,cg02521320,-0.00000164,0.00000186,-0.882991457,0.377925101,loss,ns,0.000000124,0.00000315,0.039154585,0.968792345,pos,ns,0.001771821,0.000924191,1.917157739,0.056136834,pos,ns,1.250752086,-0.00007,0.0000318,-2.203841299,0.028270348,neg,ns,0.958119474,Fyn,Fyn_Exon,10,39533836,39533885,39533836,39533837,50,+,CGCATGAATTATATCCATAGAGATCTGCGATCAGCAAACATTCTAGTGGG,"Exon (Fyn-201/Fyn, exon 12 of 14)",10,39369764,39565381,195618,1,Fyn-201,164072,Fyn-201;Fyn-202;Fyn-204;Fyn-205;Fyn-207;Fyn-206;Fyn-203,Fyn;Fyn;Fyn;Fyn;Fyn;Fyn;Fyn,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,6,14360,ENSMUSG00000019843,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20081,cg25963407,-0.0000205,0.0000103,-1.99455319,0.04696705,loss,ns,0.000000685,0.0000175,0.039152922,0.96879367,pos,ns,0.01481,0.005121892,2.891509482,0.004104943,pos,ns,2.386692845,-0.000632079,0.000176141,-3.58847307,0.000386448,neg,ns,0.775003368,Pcbp2,Pcbp2_Exon,15,102485904,102485953,102485904,102485905,50,-,CGGATTGACAGCCCTGGAGACTGAAGTCCTCTATTTATCCACAGAGCAGA,"Exon (Pcbp2-220/Pcbp2, exon 9 of 12)",15,102470539,102488880,18342,1,Pcbp2-220,15365,Pcbp2-220;Pcbp2-201;Pcbp2-205;Pcbp2-212;Pcbp2-231;Pcbp2-214;Pcbp2-216;Pcbp2-203;Pcbp2-208;Pcbp2-217;Pcbp2-202;Pcbp2-218;Pcbp2-206;Pcbp2-227;Pcbp2-219;Pcbp2-213;Pcbp2-221;Pcbp2-223;Pcbp2-207;Pcbp2-224;Pcbp2-228;Pcbp2-211;Pcbp2-226;Pcbp2-230;Pcbp2-210;Pcbp2-204;Pcbp2-215;Pcbp2-222;Pcbp2-229;Pcbp2-225,Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2;Pcbp2,0;0;0;0;0;0;0;0;14836;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,8,18521,ENSMUSG00000056851,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21092,cg03291761,-0.00000418,0.00000948,-0.441164965,0.659401101,loss,ns,-0.00000063,0.0000161,-0.039147552,0.968797948,neg,ns,-0.004601562,0.004715822,-0.975770907,0.329938818,neg,ns,0.481566586,-0.00031395,0.000162177,-1.935850243,0.053795022,neg,ns,0.829165845,Gm3191,Gm3191_Intergenic_upstream,12,106422909,106422958,106422957,106422958,50,+,GTAATGATAATCAACAGCATTTTCAACATAATTTAATTTGTCTTCTCCCG,Distal Intergenic,12,106459150,106459495,346,1,Gm3191-201,-36192,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,13,100041191,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
10841,cg13662918,0.00000213,0.0000016,1.33134871,0.184052497,gain,ns,0.000000106,0.00000271,0.039114529,0.968824255,pos,ns,0.004450599,0.000794692,5.60040923,4.72E-08,pos,ns,7.326314675,-0.000118875,0.0000273,-4.349703705,0.0000185,neg,ns,0.958820268,Ralgapa1,Ralgapa1_Intron,12,55614813,55614862,55614861,55614862,50,+,CTCTATGCATGCTGGCACTGATAGTCTTCCAATTGATCACTCTCTTTTCG,"Intron (Ralgapa1-211/Ralgapa1, intron 38 of 39)",12,55602896,55820767,217872,2,Ralgapa1-211,205905,Ralgapa1-211;Ralgapa1-212;Ralgapa1-201;Ralgapa1-202;Ralgapa1-205;Ralgapa1-206;Ralgapa1-204;Ralgapa1-203,Ralgapa1;Ralgapa1;Ralgapa1;Ralgapa1;Ralgapa1;Ralgapa1;Ralgapa1;Ralgapa1,0;0;0;0;0;-2176;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,15,56784,ENSMUSG00000021027,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11271,cg13588911,0.0000013,0.00000231,0.563664073,0.573390283,gain,ns,0.000000153,0.00000392,0.039084521,0.96884816,pos,ns,-0.00041618,0.001147281,-0.362753559,0.717036187,neg,ns,0.144458926,-0.00000413,0.0000395,-0.104642761,0.916726954,neg,ns,0.936675032,Mipol1,Mipol1_Intron,12,57292119,57292168,57292167,57292168,50,+,AAATGCCTGCAACAATCCAGACGAGAGATGCCTGGCAACAAAGCTATGCG,"Intron (Mipol1-210/Mipol1, intron 1 of 3)",12,57230427,57308695,78269,1,Mipol1-210,61692,Mipol1-210;Mipol1-207;Mipol1-206;Mipol1-205;Mipol1-201;Mipol1-209;Mipol1-208;Mipol1-203,Mipol1;Mipol1;Mipol1;Mipol1;Mipol1;Mipol1;Mipol1;Mipol1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,7,73490,ENSMUSG00000047022,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25949,cg24150369,-0.00000733,0.00000166,-4.408059738,0.0000144,loss,ns,0.00000011,0.00000282,0.039024636,0.968895867,pos,ns,-0.002455388,0.000827102,-2.9686653,0.003224182,neg,ns,2.491580395,0.0000764,0.0000284,2.686978463,0.007599176,pos,ns,0.985541094,Spen,Spen_Exon,4,141522054,141522103,141522102,141522103,50,-,AGAAACCTTGGAACTTACCCATCAAGTCTCCGCTCATAACGTCCTTCTCG,"Exon (Spen-201/Spen, exon 2 of 15)",4,141467890,141538449,70560,2,Spen-201,16346,Spen-201;Spen-202;Spen-205,Spen;Spen;Spen,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,17,19,56381,ENSMUSG00000040761,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11872,cg19630841,-0.00000931,0.00000324,-2.870374849,0.004381844,loss,ns,-0.000000214,0.00000551,-0.038881625,0.969009794,neg,ns,-0.000521254,0.001614618,-0.322834193,0.747038453,neg,ns,0.126657043,-0.0000899,0.0000555,-1.618239561,0.10662794,neg,ns,0.032701579,Tle3,Tle3_Promoter,9,61372205,61372254,61372253,61372254,50,+,TGATTGCTACTTTTCATGCATAGTTTTAGACACAAGAGGGCATTGTGACG,Promoter (<=1kb),9,61372366,61418497,46132,1,Tle3-218,-112,Tle3-218;Tle3-204;Tle3-201;Tle3-215;Tle3-212;Tle3-208;Tle3-207;Tle3-217;Tle3-202;Tle3-206;Tle3-210;Tle3-205;Tle3-211;Tle3-209;Tle3-213,Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3;Tle3,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,11,30,21887,ENSMUSG00000032280,conserved gene but different region,9,61372253,61372343,91,*,91,13,0.736263736,1.065765766,0.142857143,2.25E-12,CpGisland,TRUE,U6,En-Sp
17532,cg02185219,-0.00000683,0.00000322,-2.119047697,0.034881303,loss,ns,0.000000213,0.00000548,0.038825142,0.969054791,pos,ns,0.002414223,0.001604824,1.504353076,0.133508598,pos,ns,0.874490766,-0.0000747,0.0000552,-1.353545023,0.176867652,neg,ns,0.921156462,Dio2,Dio2_Intron,12,90733855,90733904,90733903,90733904,50,-,TGAGACATATTTGCCAAAGAGGCATTCAAAAGGCATTTTTTACTCTTGCG,"Intron (Dio2-201/Dio2, intron 1 of 1)",12,90724552,90738438,13887,2,Dio2-201,4534,Dio2-201,Dio2,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,13371,ENSMUSG00000007682,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
69,cg19346456,-0.00000788,0.00000233,-3.380240695,0.000816888,loss,ns,0.000000154,0.00000396,0.038757929,0.969108335,pos,ns,-0.001140944,0.001160989,-0.982734578,0.326504437,neg,ns,0.486110913,-0.00000284,0.0000399,-0.071235136,0.943256552,neg,ns,0.961028761,Dnmt3a,Dnmt3a_threeUTR,12,3902730,3902779,3902778,3902779,50,+,AGATGATCGCCCCTTCTTCTGGCTCTTTGAGAATGTGGTGGCCATGGGCG,3' UTR,12,3807030,3914443,107414,1,Dnmt3a-201,95700,Dnmt3a-201;Dnmt3a-218;Dnmt3a-215;Dnmt3a-205;Dnmt3a-203;Dnmt3a-214;Dnmt3a-216;Dnmt3a-210,Dnmt3a;Dnmt3a;Dnmt3a;Dnmt3a;Dnmt3a;Dnmt3a;Dnmt3a;Dnmt3a,0;0;0;0;0;5310;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,7,13435,ENSMUSG00000020661,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12477,cg03401071,-0.00000337,0.0000048,-0.703315807,0.482386835,loss,ns,0.000000315,0.00000815,0.038630131,0.969210144,pos,ns,0.000683004,0.002387697,0.286051204,0.775029962,pos,ns,0.110681508,-0.00012282,0.0000821,-1.495754845,0.135734871,neg,ns,0.891566944,Hs3st3a1,Hs3st3a1_Intron,11,64490199,64490248,64490199,64490200,50,-,CGCTTAATGTGTTTGGAGTAAGTATAATTAAATGTCAAGGGAGATATATC,"Intron (Hs3st3a1-201/Hs3st3a1, intron 1 of 1)",11,64435332,64522841,87510,1,Hs3st3a1-201,54867,Hs3st3a1-201,Hs3st3a1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,2,15478,ENSMUSG00000047759,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23784,cg21465087,-0.00000453,0.00000153,-2.956998249,0.003345186,loss,ns,-0.0000001,0.0000026,-0.038539566,0.969282292,neg,ns,-0.000218856,0.000762535,-0.287010779,0.77429581,neg,ns,0.111093091,0.00000188,0.0000262,0.071587174,0.94297661,pos,ns,0.958208808,Kdm5a,Kdm5a_Exon,6,120374883,120374932,120374883,120374884,50,-,CGCTTGGGATATCTGCCAGGAAAAGGAACTGGGTCTCTTTTGAAGTCACA,"Exon (Kdm5a-206/Kdm5a, exon 4 of 21)",6,120364124,120419473,55350,1,Kdm5a-206,10759,Kdm5a-206;Kdm5a-201;Kdm5a-204;Kdm5a-209,Kdm5a;Kdm5a;Kdm5a;Kdm5a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,7,214899,ENSMUSG00000030180,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15220,cg13000827,0.0000066,0.00000498,1.323507486,0.186641899,gain,ns,0.000000326,0.00000847,0.03849707,0.969316147,pos,ns,-0.000342259,0.002480434,-0.137983671,0.890342906,neg,ns,0.050442697,0.0000418,0.0000853,0.489773511,0.624640586,pos,ns,0.883202174,Pcdh8,Pcdh8_Intergenic_downstream,14,79724261,79724310,79724261,79724262,50,+,CGATAAAGAGCTAGCAACACTTATCAATGAAGCCAGCATGTCTTGGGAAG,Distal Intergenic,14,79769032,79771204,2173,2,Pcdh8-202,46894,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,5,18530,ENSMUSG00000036422,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7869,cg20700930,-0.0000139,0.00000643,-2.163360331,0.031277361,loss,ns,0.00000042,0.0000109,0.03844729,0.969355805,pos,ns,-0.000139679,0.003201243,-0.043632666,0.965225303,neg,ns,0.015371302,-0.000141905,0.00011009,-1.288986937,0.19836365,neg,ns,0.814386722,Gtdc1,Gtdc1_Intron,2,44575747,44575796,44575795,44575796,50,-,CCAAATGTTAAGGTGCCAAAAAAAGCTGACAAAAGCAAAGGCCCGCCTCG,"Intron (Gtdc1-203/Gtdc1, intron 7 of 10)",2,44564412,44861622,297211,2,Gtdc1-203,285826,Gtdc1-203;Gtdc1-201;Gtdc1-207;Gtdc1-208;Gtdc1-205,Gtdc1;Gtdc1;Gtdc1;Gtdc1;Gtdc1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,43,227835,ENSMUSG00000036890,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4448,cg19893718,0.00000964,0.00000819,1.177287849,0.23998372,gain,ns,0.000000534,0.0000139,0.038357905,0.969427013,pos,ns,-0.000406377,0.00407736,-0.099666699,0.92067336,neg,ns,0.035894423,-0.0000677,0.00014022,-0.483096855,0.62936797,neg,ns,0.776151402,Cfap77,Cfap77_Intron,2,28943935,28943984,28943935,28943936,50,+,CGAGCAGCTGTCAAACAAGAAAAGAATTTAGCGCCGGAGCCACGAAACTT,"Intron (Cfap77-203/Cfap77, intron 6 of 6)",2,28926949,29055024,128076,2,Cfap77-203,111040,Cfap77-203;Cfap77-204;Cfap77-205,Cfap77;Cfap77;Cfap77,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,6,329375,ENSMUSG00000079502,conserved gene and region,2,28943926,28944386,461,*,461,27,0.57483731,0.710688592,0.05856833,1.10E-14,CpGisland,TRUE,NA,NRS
3839,cg12936791,0.00000158,0.00000204,0.773440016,0.43985139,gain,ns,-0.000000133,0.00000347,-0.038247613,0.969514878,neg,ns,-0.000512064,0.001017593,-0.503211656,0.61517282,neg,ns,0.211002861,0.0000701,0.000035,2.002019147,0.046153592,pos,ns,0.972635426,Fgfr1,Fgfr1_threeUTR,8,25564431,25564480,25564431,25564432,50,+,CGGGTAACTCTATCGGACTCTCCCATCACTCTGCATGGTTGACCGTTCTG,3' UTR,8,25518759,25575718,56960,1,Fgfr1-201,45672,Fgfr1-201;Fgfr1-214;Fgfr1-215;Fgfr1-203;Fgfr1-202;Fgfr1-213;Fgfr1-208;Fgfr1-209;Fgfr1-206;Fgfr1-216;Fgfr1-204;Fgfr1-219,Fgfr1;Fgfr1;Fgfr1;Fgfr1;Fgfr1;Fgfr1;Fgfr1;Fgfr1;Fgfr1;Fgfr1;Fgfr1;Fgfr1,0;0;0;0;0;0;0;0;0;-1520;-2370;-2386,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,7,8,14182,ENSMUSG00000031565,conserved gene and region,8,25564233,25564590,358,*,358,20,0.561452514,0.708910891,0.055865922,1.13E-10,CpGisland,TRUE,U15,NS
18822,cg18434824,0.00000668,0.00000202,3.300370292,0.001078184,gain,ns,0.000000131,0.00000344,0.038201826,0.969551354,pos,ns,0.001950088,0.001007744,1.935102716,0.053887074,pos,ns,1.268515396,-0.0000389,0.0000347,-1.123235981,0.262206402,neg,ns,0.949576124,E130114P18Rik,E130114P18Rik_Intron,4,97581967,97582016,97582015,97582016,50,+,TTAGCATCAGATGAAGCTTGCTGACAGCGTAATGGCAGGGAAAGCTTCCG,"Intron (E130114P18Rik-207/E130114P18Rik, intron 1 of 4)",4,97568133,97584596,16464,2,E130114P18Rik-207,2580,E130114P18Rik-207;E130114P18Rik-201;E130114P18Rik-203;E130114P18Rik-202;E130114P18Rik-206;E130114P18Rik-204;E130114P18Rik-209;E130114P18Rik-208,E130114P18Rik;E130114P18Rik;E130114P18Rik;E130114P18Rik;E130114P18Rik;E130114P18Rik;E130114P18Rik;E130114P18Rik,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,24,319865,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9344,cg02648459,0.0000359,0.00000606,5.931808853,0.000000008,gain,yes,-0.000000392,0.0000103,-0.038119917,0.969616608,neg,ns,0.007635087,0.003015807,2.531689708,0.011845252,pos,ns,1.926455709,-0.000213291,0.000103713,-2.056539906,0.040567198,neg,ns,0.062777055,Id4,Id4_Exon,13,48261743,48261792,48261791,48261792,50,+,CCCGCCCAACAAGAAAGTCAGCAAAGTGGAGATCCTGCAGCACGTTATCG,Promoter (<=1kb),13,48261228,48266026,4799,1,Id4-201,515,Id4-201,Id4,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,9,15904,ENSMUSG00000021379,conserved gene and region,13,48261348,48262602,1255,*,1255,121,0.674103586,0.848693329,0.096414343,1.80E-89,CpGisland,TRUE,NA,NRS
26344,cg03543893,0.0000717,0.00000729,9.843114323,4.53E-20,gain,yes,0.000000471,0.0000124,0.038079044,0.96964917,pos,ns,0.011283759,0.003626654,3.111341516,0.002035715,pos,ns,2.691283101,0.0000251,0.00012472,0.200850546,0.84094715,pos,ns,0.237515271,Kiz,Kiz_Intron,2,146833510,146833559,146833558,146833559,50,+,TTAATTCTTATGCAAATTCTGACCTCCGATGGCGCCTATCAATTACCCCG,"Intron (Gm14114-201/Gm14114-201, intron 1 of 1)",2,146855864,146970097,114234,1,Kiz-201,-22305,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,29,228730,ENSMUSG00000074749,mapped to different genes,2,146833542,146833580,39,*,39,6,0.615384615,1.636363636,0.153846154,0.00000642,CpGisland,TRUE,U13,Hc-P
9290,cg19345073,-0.0000141,0.00000506,-2.791942657,0.00556455,loss,ns,0.000000327,0.0000086,0.03802361,0.969693332,pos,ns,-0.00392389,0.002519691,-1.557289917,0.120421953,neg,ns,0.919294335,-0.0000533,0.0000867,-0.614948668,0.539039746,neg,ns,0.887127764,Csmd3,Csmd3_Exon,15,47947926,47947975,47947974,47947975,50,+,CTCCATGGACAGTGACTACACATACAAGCAAATGAAAGCAGCTGACCACG,"Exon (Csmd3-202/Csmd3, exon 4 of 4)",15,47580637,48791933,1211297,2,Csmd3-204,843958,Csmd3-204;Csmd3-201;Csmd3-209;Csmd3-207;Csmd3-202,Csmd3;Csmd3;Csmd3;Csmd3;Csmd3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,16,239420,ENSMUSG00000022311,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12242,cg17008062,-0.00000774,0.00000409,-1.893115606,0.059273691,loss,ns,0.000000264,0.00000694,0.037964805,0.96974018,pos,ns,0.003836414,0.002034385,1.885785538,0.060258661,pos,ns,1.219980524,-0.000184459,0.00007,-2.636541902,0.008797392,neg,ns,0.934091968,Epha3,Epha3_Intron,16,63556752,63556801,63556752,63556753,50,-,CGCAGTCATTAAAAAGAAATCATGGAAATTACATATTTGCTCAGGGGAAG,"Intron (Epha3-201/Epha3, intron 15 of 16)",16,63543534,63864158,320625,2,Epha3-201,307357,Epha3-201;Epha3-203,Epha3;Epha3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,8,13837,ENSMUSG00000052504,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14607,cg06872549,0.0000527,0.0000113,4.660444648,0.00000469,gain,ns,0.000000729,0.0000192,0.037944922,0.969756019,pos,ns,0.012339805,0.005630744,2.191505311,0.029159001,pos,ns,1.535227354,-0.000477798,0.000193641,-2.467444404,0.014148121,neg,ns,0.448272111,Mctp1,Mctp1_Exon,13,76825172,76825221,76825172,76825173,50,-,CGAGACAGACGGCTGTCATGTCCTTTTCCCGCAGATTCAAAATGGTGAAC,Promoter (<=1kb),13,76825207,76828076,2870,1,Mctp1-208,0,Mctp1-204;Mctp1-201;Mctp1-206;Mctp1-208;Mctp1-203;Mctp1-207,Mctp1;Mctp1;Mctp1;Mctp1;Mctp1;Mctp1,0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,20,78771,ENSMUSG00000021596,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16122,cg25848836,-0.00000665,0.00000251,-2.649916217,0.008464157,loss,ns,-0.000000162,0.00000426,-0.037906255,0.969786825,neg,ns,-0.000970387,0.001248982,-0.776941915,0.437785484,neg,ns,0.358738643,0.00000188,0.000043,0.043661546,0.965202301,pos,ns,0.949075807,Bnc2,Bnc2_Intron,4,84457682,84457731,84457730,84457731,50,+,GAACTGGTGAAAAACATACGGTTCCAACTAATGAATCACATACTTTCCCG,"Intron (Bnc2-201/Bnc2, intron 4 of 7)",4,84275095,84675034,399940,2,Bnc2-201,217303,Bnc2-201;Bnc2-202;Bnc2-214;Bnc2-215;Bnc2-206;Bnc2-211;Bnc2-205;Bnc2-217;Bnc2-207;Bnc2-212;Bnc2-203;Bnc2-209;Bnc2-221;Bnc2-204;Bnc2-220;Bnc2-208,Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,91,242509,ENSMUSG00000028487,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12739,cg25904692,-0.00000674,0.00000584,-1.15372115,0.249503221,loss,ns,-0.000000376,0.00000992,-0.03788486,0.96980387,neg,ns,-0.002629416,0.002907668,-0.904304127,0.366536373,neg,ns,0.435882922,0.0000993,0.0001,0.993118902,0.321426552,pos,ns,0.861468088,Tpm1,Tpm1_Exon,9,67029686,67029735,67029686,67029687,50,-,CGTGGTCCAGCTCCTCGCTGATGGCTTTGTACTTCAGTTTCTGAGCGTAC,"Exon (Tpm1-205/Tpm1, exon 9 of 10)",9,67022590,67043907,21318,2,Tpm1-212,14172,Tpm1-212;Tpm1-215;Tpm1-216;Tpm1-211;Tpm1-209;Tpm1-202;Tpm1-218;Tpm1-214;Tpm1-213;Tpm1-220;Tpm1-210;Tpm1-208;Tpm1-205;Tpm1-203;Tpm1-206;Tpm1-207;Tpm1-204;Tpm1-201;Tpm1-221;Tpm1-217;Tpm1-219,Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1;Tpm1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,10,22003,ENSMUSG00000032366,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16006,cg20592694,-0.0000102,0.00000352,-2.906444178,0.003918998,loss,ns,0.000000226,0.00000598,0.037786193,0.969882474,pos,ns,0.000416004,0.001751144,0.237561413,0.812378209,pos,ns,0.090241734,-0.000105142,0.0000602,-1.745914647,0.081816421,neg,ns,0.956117224,Gm12416,Gm12416_Intergenic_downstream,4,84153903,84153952,84153903,84153904,50,-,CGCACACACATATCTCAAGATTATCCCACAAGTATATTTCTGGTGGAGAG,Distal Intergenic,4,84104895,84105902,1008,1,Gm12416-201,49057,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,11,668010,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3162,cg19910657,0.00000218,0.000000754,2.885589246,0.004180854,gain,ns,-4.82E-08,0.00000128,-0.037619701,0.970015114,neg,ns,0.001058428,0.000375414,2.819361599,0.005121643,pos,ns,2.2905907,-0.0000264,0.0000129,-2.04224664,0.041972962,neg,ns,0.011437046,Nol4,Nol4_Promoter,18,23041737,23041786,23041785,23041786,50,+,TGATTGGCCAATGGGACAAAAGTTTCTGTGGAGACGGCTGGGCGCTGACG,Promoter (<=1kb),18,22693634,23041653,348020,2,Nol4-204,-84,Nol4-202;Nol4-204;Nol4-208;Nol4-206;Nol4-209,Nol4;Nol4;Nol4;Nol4;Nol4,0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,5,21,319211,ENSMUSG00000041923,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
9948,cg12695436,-0.0000832,0.0000103,-8.092308435,1.34E-14,loss,yes,0.000000656,0.0000175,0.037556011,0.970065854,pos,ns,0.029287557,0.005118396,5.722018226,2.48E-08,pos,ns,7.605239203,-0.00019154,0.000176021,-1.088161848,0.277368928,neg,ns,0.855364725,Skap2,Skap2_Intron,6,51709119,51709168,51709167,51709168,50,+,CATATTGAAATACAGTCACTGAGAATTCTTTTATGATGAGTCTAAATTCG,"Intron (Gm38811-201/Gm38811-201, intron 1 of 1)",6,51859104,51871929,12826,2,Skap2-207,162761,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,19,54353,ENSMUSG00000059182,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11952,cg00535482,0.0000131,0.0000031,4.218515987,0.0000323,gain,ns,-0.000000198,0.00000527,-0.0375476,0.970072555,neg,ns,-0.00163453,0.001543645,-1.058876857,0.290480225,neg,ns,0.536883427,0.000111008,0.0000531,2.091100151,0.037332958,pos,ns,0.041767638,Tbr1,Tbr1_Exon,2,61804104,61804153,61804104,61804105,50,+,CGGCTCGCGCTTTGTATACTTTGCACTTGAAATCGTTACATTCAACTGAA,"Exon (Tbr1-204/Tbr1, exon 2 of 2)",2,61802930,61804558,1629,1,Tbr1-204,1174,Psmd14-201;Psmd14-208;Psmd14-202;Tbr1-204;Tbr1-201;Tbr1-202;Tbr1-203,Psmd14;Psmd14;Psmd14;Tbr1;Tbr1;Tbr1;Tbr1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,24,27,21375,ENSMUSG00000035033,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3649,cg25424749,0.00000253,0.00000137,1.846247438,0.065809441,gain,ns,-0.000000087,0.00000232,-0.037410206,0.970182014,neg,ns,0.001420074,0.000680949,2.085434987,0.0378475,pos,ns,1.421962803,-0.0000133,0.0000234,-0.566070097,0.571755667,neg,ns,0.02698679,Erfl,Erfl_Promoter,7,24944932,24944981,24944932,24944933,50,+,CGGAAAATAAAGTTCAGAGCTGATCAAATTTGAAAACAGATGTCGAATCG,Promoter (<=1kb),7,24927445,24944494,17050,2,Erfl-201,-438,Erfl-201,Erfl,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,29,36,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
17966,cg03434240,0.00000471,0.00000387,1.216628063,0.224671237,gain,ns,0.000000245,0.00000658,0.037321489,0.970252693,pos,ns,-0.002065578,0.001926281,-1.072313802,0.284413168,neg,ns,0.546050301,0.0000687,0.0000662,1.036543136,0.300756687,pos,ns,0.90413454,Prdm11,Prdm11_threeUTR,2,92973767,92973816,92973815,92973816,50,-,GGTGTTGAAGAGCAGGGTCATGTTGCGACACATCTCCTCTGTCTTCTCCG,3' UTR,2,92972018,93045571,73554,2,Prdm11-202,71755,Prdm11-202;Prdm11-206;Prdm11-205,Prdm11;Prdm11;Prdm11,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,3,100042784,ENSMUSG00000075028,conserved gene but different region,2,92973694,92973826,133,*,133,9,0.654135338,0.634676564,0.067669173,0.00000959,CpGisland,TRUE,NA,NRS
16131,cg25621225,-0.00002,0.00000319,-6.279579624,1.15E-09,loss,yes,0.000000202,0.00000542,0.037271149,0.970292799,pos,ns,-0.000596325,0.001587621,-0.375609171,0.707464357,neg,ns,0.150295436,0.0000837,0.0000546,1.532280377,0.126473112,pos,ns,0.933817815,Aatf,Aatf_Intron,11,84481752,84481801,84481800,84481801,50,-,TTAAAAAACACCGATTCCACTGTCTTCAACTTTAATCAACTGTATGGCCG,"Intron (Aatf-201/Aatf, intron 5 of 12)",11,84422855,84513522,90668,2,Aatf-201,31721,Aatf-201;Aatf-202;Aatf-204,Aatf;Aatf;Aatf,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,10,56321,ENSMUSG00000018697,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
6037,cg16450419,0.0000136,0.0000043,3.159427997,0.001736738,gain,ns,0.000000271,0.0000073,0.037106688,0.970423823,pos,ns,0.003073837,0.002139807,1.436502256,0.151867883,pos,ns,0.818534062,-0.0000525,0.0000736,-0.713459301,0.47609835,neg,ns,0.011798956,Cxxc5,Cxxc5_Intergenic_downstream,18,35887759,35887808,35887807,35887808,50,-,TGTTCCCATCTGGAGCGCGTTTGGCGCGGCGTGGCGGGGGCGGGGCTGCG,Distal Intergenic,18,35854738,35858619,3882,1,Cxxc5-205,33070,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,49,67393,ENSMUSG00000046668,conserved gene but different region,18,35887596,35887837,242,*,242,21,0.702479339,0.70378064,0.08677686,5.36E-15,CpGisland,TRUE,U3,Pr-B
17451,cg05136138,-0.00000633,0.00000274,-2.312424276,0.021409108,loss,ns,-0.000000172,0.00000465,-0.037086261,0.970440097,neg,ns,-0.002291505,0.001362499,-1.681839735,0.093606945,neg,ns,1.02869193,-0.0000333,0.0000469,-0.710659128,0.477829799,neg,ns,0.968232495,Nrxn3,Nrxn3_Exon,12,90321941,90321990,90321989,90321990,50,+,AGCTCTAATGCAGCTAGATCACTCCGTGCCGCCCTTACATGGACATGGCG,"Exon (Nrxn3-213/Nrxn3, exon 18 of 19)",12,88722986,90332878,1609893,1,Nrxn3-213,1598955,Nrxn3-213;Nrxn3-208;Nrxn3-205;Nrxn3-201;Nrxn3-210;Nrxn3-214;Nrxn3-203;Nrxn3-202,Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3;Nrxn3,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,39,18191,ENSMUSG00000066392,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17735,cg00109303,0.000134157,0.0000184,7.30681676,2.33E-12,gain,yes,-0.00000115,0.0000312,-0.036880204,0.970604261,neg,ns,-0.009737997,0.009138191,-1.065637336,0.287416876,neg,ns,0.541487735,0.000690012,0.000314262,2.195659476,0.028857085,pos,ns,0.772154031,Fto,Fto_Intron,8,91552256,91552305,91552304,91552305,50,-,TGTGACCAGGAGTCTGTTTAGCAGACCATATTGTGAGTGAAGGGCCAGCG,"Intron (Fto-201/Fto, intron 8 of 8)",8,91313525,91668439,354915,1,Fto-201,238731,Fto-201;Fto-205,Fto;Fto,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,26,26383,ENSMUSG00000055932,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11128,cg08698979,0.0000216,0.00000296,7.274978316,2.86E-12,gain,yes,0.000000185,0.00000503,0.036802239,0.970666376,pos,ns,0.003360035,0.001474417,2.278889837,0.023353343,pos,ns,1.631650947,-0.0000372,0.0000507,-0.734378548,0.463273167,neg,ns,0.047949706,Pax9,Pax9_Promoter,12,56691360,56691409,56691360,56691361,50,+,CGATTGTTTTTATTGTAATAGAAGGAGTGAGCAAACAGAAAAACCAACCC,Promoter (<=1kb),12,56691767,56712707,20941,1,Pax9-203,-358,Pax9-203;Pax9-201;Pax9-202,Pax9;Pax9;Pax9,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,3,7,18511,ENSMUSG00000001497,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6759,cg08777872,0.00000339,0.0000016,2.113564854,0.035351081,gain,ns,0.0000001,0.00000273,0.036716122,0.970734985,pos,ns,0.000938613,0.000798369,1.175663297,0.240631567,pos,ns,0.618647401,0.00000958,0.0000275,0.348986426,0.727336418,pos,ns,0.051048288,Lhx2,Lhx2_Intron,2,38348011,38348060,38348059,38348060,50,-,GCTATGAAGACATAAAACCAGCGCGCACAATGAAGTAGTTGCCTGCAGCG,"Intron (Lhx2-203/Lhx2, intron 1 of 4)",2,38339281,38369199,29919,1,Lhx2-203,8730,Lhx2-203;Lhx2-204;Lhx2-202;Lhx2-201;Lhx2-207;Lhx2-205,Lhx2;Lhx2;Lhx2;Lhx2;Lhx2;Lhx2,0;0;0;0;-3708;-4472,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,33,16870,ENSMUSG00000000247,mapped to different genes,2,38347822,38348178,357,*,357,27,0.518207283,1.126841244,0.075630252,1.55E-17,CpGisland,TRUE,U3,Pr-B
7257,cg02165311,-0.0000295,0.00000715,-4.131846025,0.0000463,loss,ns,0.000000445,0.0000121,0.036666767,0.970774307,pos,ns,-0.007414982,0.003559106,-2.083383509,0.038035316,neg,ns,1.419812976,-0.0000552,0.000122397,-0.450801475,0.652447785,neg,ns,0.843207476,Gm5267,Gm5267_Intron,1,41812313,41812362,41812313,41812314,50,+,CGTTCCTTGTTAAGGATCATTTATTAACTGAGATCATCTTTTAGTTCGCC,"Intron (Gm29260-201/Gm29260-201, intron 1 of 5)",1,42103289,42104333,1045,1,Gm5267-201,-290927,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,15,383634,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6454,cg07804445,-0.0000505,0.0000191,-2.641986663,0.008660334,loss,ns,0.00000119,0.0000325,0.036636514,0.970798409,pos,ns,-0.009961387,0.009507565,-1.047732718,0.295577954,neg,ns,0.529327962,0.000285556,0.000326964,0.873354647,0.383145814,pos,ns,0.268517384,Zfp536,Zfp536_Intron,7,37337398,37337447,37337398,37337399,50,-,CGTCTGCCTGCAAAGCCACTCTCCCAGAGACAAGGGAGAAGGGGAAAAAA,"Intron (Zfp536-211/Zfp536, intron 3 of 3)",7,37318024,37568390,250367,2,Zfp536-211,230943,Zfp536-211,Zfp536,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,73,112,243937,ENSMUSG00000043456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
2972,cg23806723,0.00000821,0.00000483,1.700031513,0.090128003,gain,ns,0.0000003,0.0000082,0.036620673,0.97081103,pos,ns,-0.003036985,0.002402312,-1.264192293,0.207110716,neg,ns,0.683797429,0.000213929,0.0000826,2.589459549,0.010066221,pos,ns,0.811656972,Lrmda,Lrmda_Intron,14,22198640,22198689,22198640,22198641,50,-,CGAATTGGGATGAGTTGGGCAAAAGTGACAGTTTAAAAATAACGTATATT,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,178928,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206,Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27134,cg26764986,0.00000862,0.00000725,1.189476623,0.235162406,gain,ns,0.00000045,0.0000123,0.036560575,0.97085891,pos,ns,0.000277279,0.003608484,0.076840846,0.938799725,pos,ns,0.027427046,-0.000174323,0.000124095,-1.404745839,0.161098072,neg,ns,0.925167616,Pappa2,Pappa2_Intergenic_upstream,1,159068608,159068657,159068656,159068657,50,+,AGTGTACCAAAGTCCAAAAATAAAGACCAGATGTCTTCAAATTGCTGACG,Distal Intergenic,1,158958127,158980490,22364,2,Pappa2-203,-88118,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,4,23850,ENSMUSG00000073530,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27452,cg21988568,-0.0000169,0.00000322,-5.240149786,0.000000297,loss,yes,0.0000002,0.00000548,0.036531511,0.970882065,pos,ns,-0.000814624,0.001604585,-0.507685269,0.61203509,neg,ns,0.213223678,-0.0000406,0.0000552,-0.735410774,0.462645378,neg,ns,0.93652056,Pbx1,Pbx1_Intron,1,168265370,168265419,168265370,168265371,50,-,CGCAGCTATTTCTAATAATGGTAATTATAATGATTTGAGGCTTAAGCAGG,"Intron (Pbx1-208/Pbx1, intron 2 of 7)",1,168119364,168432270,312907,2,Pbx1-208,166851,Pbx1-208;Pbx1-205;Pbx1-206;Pbx1-201;Pbx1-202;Pbx1-204,Pbx1;Pbx1;Pbx1;Pbx1;Pbx1;Pbx1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,84,18514,ENSMUSG00000052534,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22167,cg08159005,0.000102902,0.00000841,12.22879277,2.50E-28,gain,yes,-0.000000521,0.0000143,-0.036452891,0.970944703,neg,ns,0.007570349,0.004188095,1.80758758,0.071639923,pos,ns,1.144844889,0.000422697,0.000144028,2.93482353,0.00358669,pos,ns,0.205362179,Znrf1,Znrf1_Exon,8,111537464,111537513,111537464,111537465,50,+,CGGTCACCATAGAGACGGGATGCTGTACCTGGGCTCCCGAGCCTCGCTGG,Promoter (<=1kb),8,111537487,111622501,85015,1,Znrf1-214,0,Znrf1-205;Znrf1-203;Znrf1-204;Znrf1-201;Znrf1-207;Znrf1-209;Znrf1-214;Znrf1-215;Znrf1-213;Znrf1-202;Znrf1-206;Znrf1-210,Znrf1;Znrf1;Znrf1;Znrf1;Znrf1;Znrf1;Znrf1;Znrf1;Znrf1;Znrf1;Znrf1;Znrf1,0;0;0;0;0;0;0;-65;-830;-830;-952;-3746,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,170737,ENSMUSG00000033545,mapped to different genes,8,111537011,111537629,619,*,619,63,0.709208401,0.809603886,0.10177706,1.63E-48,CpGisland,TRUE,NA,NRS
18895,cg12702153,-0.00000984,0.00000521,-1.888626373,0.05987532,loss,ns,-0.000000322,0.00000885,-0.036411616,0.970977587,neg,ns,-0.000323569,0.002593648,-0.12475422,0.900798989,neg,ns,0.04537211,0.0000729,0.0000892,0.81767676,0.414169795,pos,ns,0.868303604,Dach1,Dach1_Intron,14,97858528,97858577,97858576,97858577,50,-,TGTACTAAAATAAAGTCAAGTACAACAGCCGCTCCCTGCCCATCAAAACG,"Intron (Dach1-201/Dach1, intron 6 of 10)",14,97786853,98169543,382691,2,Dach1-201,310966,Dach1-201;Dach1-202;Dach1-203,Dach1;Dach1;Dach1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,76,13134,ENSMUSG00000055639,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24895,cg24473065,-0.0000456,0.00000814,-5.596636027,4.81E-08,loss,yes,0.000000502,0.0000138,0.036282498,0.971080458,pos,ns,-0.00315259,0.004052882,-0.77786373,0.437242603,neg,ns,0.359277529,-0.000199861,0.000139378,-1.433943679,0.152596226,neg,ns,0.782849182,Plpp4,Plpp4_Exon,7,129307673,129307722,129307721,129307722,50,+,ATCTGGCTCTATAAAAATCCTTTGGTGCAATCAGATAACATACCTACCCG,"Exon (Plpp4-201/Plpp4, exon 2 of 7)",7,129257031,129391412,134382,1,Plpp4-201,50642,Plpp4-201;Plpp4-204;Plpp4-205;Plpp4-202;Plpp4-203,Plpp4;Plpp4;Plpp4;Plpp4;Plpp4,0;0;50626;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,6,381925,ENSMUSG00000070366,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20680,cg20306303,0.0000322,0.000012,2.675042369,0.007868637,gain,ns,-0.00000074,0.0000204,-0.036250718,0.971105777,neg,ns,0.00342586,0.00598416,0.572487976,0.567406381,pos,ns,0.246105785,0.000213189,0.000205795,1.035931834,0.301041348,pos,ns,0.760877788,Pou4f1,Pou4f1_Intron,14,104453354,104453403,104453354,104453355,50,-,CGGCTGATGCAAAACCCCCAGTGATTGAATTTTGACGTTAAGTCAACAAC,"Intron (D130079A08Rik-202/D130079A08Rik-202, intron 1 of 4)",14,104463973,104465365,1393,2,Pou4f1-202,12011,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,31,18996,ENSMUSG00000048349,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20627,cg08594840,-0.000000836,0.00000185,-0.451033255,0.652280911,loss,ns,0.000000114,0.00000315,0.036203749,0.971143198,pos,ns,0.001824547,0.000923001,1.976755932,0.048955162,pos,ns,1.310201508,-0.0000879,0.0000317,-2.769579714,0.00595119,neg,ns,0.956625626,Magi3,Magi3_Exon,3,104046855,104046904,104046855,104046856,50,-,CGTTTATCTTCATATAAAGTCTTAGATTTCAGGTAGACCTCAGAAGGATC,"Exon (Magi3-201/Magi3, exon 12 of 22)",3,104013259,104220374,207116,2,Magi3-201,173470,Magi3-201;Magi3-202;Magi3-203,Magi3;Magi3;Magi3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,3,99470,ENSMUSG00000052539,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23402,cg17192341,-0.0000184,0.00000371,-4.969870241,0.00000111,loss,yes,-0.000000227,0.00000631,-0.0359795,0.971321861,neg,ns,-0.001732025,0.001847282,-0.937607549,0.349176026,neg,ns,0.456955582,-0.0000577,0.0000635,-0.908637057,0.364247587,neg,ns,0.952761505,Ptprf,Ptprf_Intron,4,118256552,118256601,118256600,118256601,50,+,GAGTTTTAATTAAATTAAATGAGCTAACACTTCGTGGGCTGTCTCAGGCG,"Intron (Ptprf-201/Ptprf, intron 6 of 32)",4,118208213,118291405,83193,2,Ptprf-201,34804,Ptprf-201;Ptprf-207,Ptprf;Ptprf,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,9,19268,ENSMUSG00000033295,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12128,cg09405431,-0.000000796,0.00000521,-0.152784347,0.878667739,loss,ns,0.000000317,0.00000885,0.035856098,0.971420179,pos,ns,-0.001377426,0.002593226,-0.531163021,0.595686173,neg,ns,0.224982481,-0.000376166,0.0000892,-4.218013825,0.0000324,neg,ns,0.732364432,Ino80d,Ino80d_Exon,1,63058626,63058675,63058626,63058627,50,-,CGTGAGGTGATTAGGTCATCTGCCTTGCTCAGCAGCTGGGCAGGATGTGG,"Exon (Ino80d-202/Ino80d, exon 9 of 13)",1,62958418,63091929,133512,2,Ino80d-202,33254,Ino80d-202;Ino80d-205;Ino80d-206;Ino80d-201;Ino80d-207;Ino80d-203;Ino80d-204,Ino80d;Ino80d;Ino80d;Ino80d;Ino80d;Ino80d;Ino80d,0;0;0;0;4886;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,12,227195,ENSMUSG00000040865,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
27018,cg10974737,-0.0000105,0.00000567,-1.845794182,0.06587545,loss,ns,0.000000342,0.00000963,0.035477204,0.971722057,pos,ns,-0.001838571,0.002822282,-0.65144841,0.515239705,neg,ns,0.287990677,0.0000846,0.0000971,0.871909537,0.383932508,pos,ns,0.097831544,Rbm39,Rbm39_threeUTR,2,156178858,156178907,156178858,156178859,50,-,CGATAAGTCACTCAATTACTACCTTATGATTGACAGTTCACACTGGAATC,3' UTR,2,156147239,156180238,33000,2,Rbm39-203,1331,Rbm39-203;Rbm39-217;Rbm39-215;Rbm39-201;Rbm39-225;Rbm39-223;Rbm39-204;Rbm39-216;Rbm39-213;Rbm39-214;Rbm39-218;Rbm39-219;Rbm39-210;Rbm39-224;Rbm39-212;Rbm39-202;Rbm39-208;Rbm39-222;Rbm39-205;Rbm39-211,Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39;Rbm39,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,11,13,170791,ENSMUSG00000027620,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
3713,cg06358822,0.0000383,0.00000532,7.189418115,4.90E-12,gain,yes,0.000000321,0.00000904,0.035474374,0.971724312,pos,ns,0.003967652,0.002648137,1.498280371,0.135077988,pos,ns,0.869415417,-0.0000619,0.0000911,-0.680140854,0.496922888,neg,ns,0.742649211,Pou2f2,Pou2f2_Exon,7,25116178,25116227,25116178,25116179,50,+,CGGGACCCCAGAATGTTAAGTGGAGGCCAGAGAGAATGCCCACCTGTGAA,"Exon (Pou2f2-201/Pou2f2, exon 5 of 14)",7,25087344,25132488,45145,2,Pou2f2-203,16261,Pou2f2-203;Pou2f2-209;Pou2f2-201;Pou2f2-206;Pou2f2-204;Pou2f2-205;Pou2f2-202;Pou2f2-210;Pou2f2-207;Pou2f2-208,Pou2f2;Pou2f2;Pou2f2;Pou2f2;Pou2f2;Pou2f2;Pou2f2;Pou2f2;Pou2f2;Pou2f2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,29,18987,ENSMUSG00000008496,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20261,cg27638358,0.0000677,0.00000675,10.02308527,1.15E-20,gain,yes,0.000000406,0.0000115,0.035427286,0.971761828,pos,ns,0.008932611,0.003361044,2.657689582,0.00827573,pos,ns,2.082193677,-0.000291762,0.000115586,-2.524199563,0.012095334,neg,ns,0.122081524,Hoxc5,Hoxc5_Exon,15,102973386,102973435,102973434,102973435,50,-,GATTGAGTTTTGAACTCGGCAACAAGAAACTGCCTGAGTTACATCAGTCG,"Exon (Mir196a-2-201/Mir196a-2-201, exon 1 of 1)",15,102967443,103015676,48234,1,Hoxc5-202,5943,Hoxc10-201;Hoxc5-202;Hoxc9-202;Hoxc9-201,Hoxc10;Hoxc5;Hoxc9;Hoxc9,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,72,134,15424,ENSMUSG00000022485,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
25948,cg03174925,0.00000041,0.00000455,0.090044071,0.928310343,gain,ns,-0.000000274,0.00000773,-0.035401313,0.971782522,neg,ns,-0.006058802,0.002263959,-2.676197956,0.007842178,neg,ns,2.105563305,0.00017044,0.0000779,2.189136681,0.029332368,pos,ns,0.913160288,Spen,Spen_Exon,4,141522045,141522094,141522093,141522094,50,-,CCTGCCTACAGAAACCTTGGAACTTACCCATCAAGTCTCCGCTCATAACG,"Exon (Spen-201/Spen, exon 2 of 15)",4,141467890,141538449,70560,2,Spen-201,16355,Spen-201;Spen-202;Spen-205,Spen;Spen;Spen,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,17,19,56381,ENSMUSG00000040761,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11809,cg21730656,-0.000000192,0.00000307,-0.062493554,0.950210068,loss,ns,-0.000000185,0.00000522,-0.03537747,0.971801519,neg,ns,0.00133653,0.001527878,0.874761883,0.382380692,pos,ns,0.417504045,-0.000021,0.0000525,-0.399566868,0.689750712,neg,ns,0.920085223,Tcof1,Tcof1_Intron,18,60817127,60817176,60817127,60817128,50,-,CGCCTCTGCTTGCCTTTGATAATTGTGTGCTGACTACACGTGTAAAAAAA,"Intron (Tcof1-202/Tcof1, intron 22 of 25)",18,60813755,60848929,35175,2,Tcof1-202,31753,Cd74-202;Cd74-201;Cd74-203;Tcof1-202;Tcof1-204;Tcof1-201;Tcof1-205,Cd74;Cd74;Cd74;Tcof1;Tcof1;Tcof1;Tcof1,13279;13279;13271;0;0;0;31742,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,21453,ENSMUSG00000024613,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24605,cg17624211,0.000000707,0.00000489,0.144788381,0.884972043,gain,ns,-0.000000292,0.0000083,-0.03515847,0.971976006,neg,ns,-0.005672719,0.002431603,-2.33291366,0.0202922,neg,ns,1.692670875,0.000031,0.0000836,0.370132382,0.711536605,pos,ns,0.87796637,Dtx3,Dtx3_Exon,10,127191438,127191487,127191438,127191439,50,-,CGCTGGTCAAACGCCTTGCGGAACAGGGTCAGCACCTTGTTGCCCTCAGG,"Exon (Dtx3-201/Dtx3, exon 5 of 6)",10,127190378,127195709,5332,2,Dtx3-201,4222,Arhgef25-210;Arhgef25-205;Arhgef25-201;Arhgef25-202;Arhgef25-212;Arhgef25-206;Arhgef25-203;Arhgef25-204;Arhgef25-207;Dtx3-201;Dtx3-204;Dtx3-202;Dtx3-205;Dtx3-206;Dtx3-203,Arhgef25;Arhgef25;Arhgef25;Arhgef25;Arhgef25;Arhgef25;Arhgef25;Arhgef25;Arhgef25;Dtx3;Dtx3;Dtx3;Dtx3;Dtx3;Dtx3,0;0;0;0;0;-4215;0;0;0;0;0;0;0;0;4232,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,80904,ENSMUSG00000040415,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
914,cg20266585,0.0000186,0.00000328,5.669329505,3.28E-08,gain,yes,-0.000000194,0.00000557,-0.034898035,0.972183507,neg,ns,0.0000658,0.001631916,0.040304219,0.967876535,pos,ns,0.014180039,-0.00000329,0.0000561,-0.058655722,0.953264119,neg,ns,0.088659273,Gdf6,Gdf6_Intron,4,9847181,9847230,9847229,9847230,50,-,GAAAGCCTCACTTTCCCTCTCACTGATTTTGATTTGATGTGTCACCGGCG,"Intron (Gdf6-201/Gdf6, intron 1 of 1)",4,9844372,9862345,17974,1,Gdf6-201,2809,Gdf6-201,Gdf6,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,11,242316,ENSMUSG00000051279,conserved gene and region,4,9847226,9847435,210,*,210,17,0.580952381,0.959419511,0.080952381,1.02E-11,CpGisland,TRUE,NA,NRS
21546,cg03292029,-0.000000737,0.00000406,-0.181601159,0.856014422,loss,ns,-0.00000024,0.00000689,-0.034745966,0.972304669,neg,ns,-0.004303103,0.002019909,-2.130345422,0.033930166,neg,ns,1.469414009,0.0000755,0.0000695,1.087243945,0.277773637,pos,ns,0.86653626,Atxn7l2,Atxn7l2_Exon,3,108208005,108208054,108208053,108208054,50,-,AGTGGTTACACACAACCAAGTAGAAGTCATCATGGGCAGGGCAGTGCCCG,"Exon (Atxn7l2-202/Atxn7l2, exon 3 of 11)",3,108202222,108210486,8265,2,Atxn7l2-202,2432,Atxn7l2-202;Atxn7l2-201;Atxn7l2-206;Atxn7l2-203;Atxn7l2-204;Atxn7l2-205;Atxn7l2-207;Sypl2-201,Atxn7l2;Atxn7l2;Atxn7l2;Atxn7l2;Atxn7l2;Atxn7l2;Atxn7l2;Sypl2,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,72522,ENSMUSG00000048997,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18542,cg07026794,0.0000794,0.00000701,11.3281214,4.00E-25,gain,yes,-0.000000413,0.0000119,-0.034657271,0.972375338,neg,ns,0.009909809,0.003488897,2.840384244,0.004804014,pos,ns,2.318395725,0.0000105,0.000119983,0.087885037,0.930024794,pos,ns,0.223960291,Hoxb8,Hoxb8_fiveUTR,11,96282553,96282602,96282601,96282602,50,+,TCACCGAAAACTGTTTATGAACTGGCATCCCTTCTTCGAAATGTAAAGCG,Promoter (<=1kb),11,96282556,96284315,1760,1,Hoxb8-202,0,Hoxb7-201;Hoxb8-201;Hoxb8-202;Hoxb8-203,Hoxb7;Hoxb8;Hoxb8;Hoxb8,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,11,26,15416,ENSMUSG00000056648,mapped to different genes,11,96282557,96282759,203,*,203,11,0.517241379,0.858846154,0.054187192,0.00000533,CpGisland,TRUE,U13,Hc-P
17327,cg18294366,-0.0000117,0.00000564,-2.080032273,0.038343839,loss,ns,-0.000000331,0.00000958,-0.034596467,0.972423785,neg,ns,-0.006019437,0.002805872,-2.145299716,0.032705518,neg,ns,1.485378972,0.000100962,0.0000965,1.046308868,0.296233584,pos,ns,0.880354373,Ankfn1,Ankfn1_Intron,11,89718488,89718537,89718536,89718537,50,-,TAACTATAAAAGAACCGTGTAAACTTGTTGTCATCTAGACACATTAGCCG,"Intron (Ankfn1-208/Ankfn1, intron 3 of 21)",11,89391238,89841266,450029,2,Ankfn1-208,122729,Ankfn1-208;Ankfn1-204,Ankfn1;Ankfn1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,15,382543,ENSMUSG00000047773,mapped to different genes,11,89718503,89718683,181,*,181,11,0.502762431,0.971219512,0.060773481,0.00000179,CpGisland,TRUE,U15,NS
11754,cg17107784,-0.0000407,0.00000929,-4.383114856,0.000016,loss,ns,-0.000000545,0.0000158,-0.034541835,0.972467313,neg,ns,-0.013642046,0.004624009,-2.950263988,0.003416907,neg,ns,2.466366898,0.000215456,0.000159019,1.354907221,0.176433652,pos,ns,0.743545871,Abi2,Abi2_Exon,1,60447348,60447397,60447396,60447397,50,-,CCCTCGCAGCAGAGCCCTGTGAGGACAGCTTCTGTGAATCAAAGAAATCG,"Exon (Abi2-201/Abi2, exon 5 of 9)",1,60409619,60481158,71540,1,Abi2-201,37729,Abi2-201;Abi2-206;Abi2-207;Abi2-210;Abi2-212;Abi2-208;Abi2-205;Abi2-202;Abi2-204;Abi2-203;Abi2-211,Abi2;Abi2;Abi2;Abi2;Abi2;Abi2;Abi2;Abi2;Abi2;Abi2;Abi2,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,Exon,9,9,329165,ENSMUSG00000026782,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24572,cg12521167,0.00000196,0.0000024,0.816620879,0.414772212,gain,ns,0.00000014,0.00000407,0.034513619,0.972489795,pos,ns,0.00097955,0.001192212,0.821624336,0.411922176,pos,ns,0.385184827,0.00000574,0.000041,0.140092291,0.888678049,pos,ns,0.058553732,Maz,Maz_Exon,7,127025305,127025354,127025353,127025354,50,-,GGGAGAAGCTCTTGCCACAGTGGGAGCAGTTGTAGGGCTTGTGCACAGCG,"Exon (Maz-203/Maz, exon 2 of 6)",7,127022130,127026526,4397,2,Maz-203,1172,Gm42742-201;Gm42742-203;Gm42742-204;Gm42742-202;Kif22-202;Kif22-201;Kif22-205;Kif22-206;Maz-203;Maz-201;Maz-204;Maz-202;Maz-206;Maz-205;Prrt2-201;Prrt2-202;Prrt2-205;Prrt2-206;Prrt2-207,Gm42742;Gm42742;Gm42742;Gm42742;Kif22;Kif22;Kif22;Kif22;Maz;Maz;Maz;Maz;Maz;Maz;Prrt2;Prrt2;Prrt2;Prrt2;Prrt2,0;0;0;0;3603;17117;2762;7350;0;0;0;0;0;0;0;0;-4349;-4168;-4950,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,16,17,17188,ENSMUSG00000030678,conserved gene and region,7,127025353,127025621,269,*,269,30,0.669144981,1.002359955,0.111524164,1.16E-24,CpGisland,TRUE,NA,NRS
26088,cg19329327,-0.0000197,0.00000545,-3.608488683,0.000358941,loss,ns,-0.000000319,0.00000926,-0.034472993,0.972522164,neg,ns,0.005320251,0.002713423,1.960715338,0.050807405,pos,ns,1.294072983,-0.000448277,0.0000933,-4.803943094,0.00000243,neg,ns,0.83571714,Gm2505,Gm2505_Intron,3,143822569,143822618,143822617,143822618,50,+,TAAAAGCCTATAAGTGCTTCTGTTCTTGAACAAAGTGAAATCAGTTTACG,"Intron (Gm42705-201/Gm42705-201, intron 5 of 5)",3,143872995,143873819,825,1,Gm2505-201,-50377,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,37,100039938,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21123,cg03117327,0.000045,0.00000741,6.079754194,3.53E-09,gain,yes,0.000000434,0.0000126,0.034444126,0.972545164,pos,ns,0.008939497,0.003687308,2.424396624,0.015905395,pos,ns,1.798455541,-0.000249985,0.000126806,-1.97139654,0.049567584,neg,ns,0.112990223,Gm3191,Gm3191_Intergenic_downstream,12,106479552,106479601,106479600,106479601,50,-,CAGATCTGATCAGGGCGCTGATGTGTTCAGCGCCAAATCACACAACAGCG,Distal Intergenic,12,106459150,106459495,346,1,Gm3191-201,20451,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,11,13,100041191,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3180,cg04123138,-8.14E-08,0.00000046,-0.176964892,0.859651529,loss,ns,2.68E-08,0.000000781,0.034375641,0.972599731,pos,ns,0.000373677,0.000228818,1.633078395,0.103467733,pos,ns,0.985195065,-0.0000171,0.00000787,-2.173807231,0.030476065,neg,ns,0.010732682,Klf9,Klf9_Exon,19,23142048,23142097,23142048,23142049,50,+,CGTGACCACCGAATCTGGGTCGAGTCCTTCCCACAGCCCGGAGGAGAGAC,Promoter (<=1kb),19,23141226,23168134,26909,1,Klf9-201,822,Klf9-201;Klf9-202,Klf9;Klf9,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,13,16601,ENSMUSG00000033863,conserved gene and region,19,23141183,23142172,990,*,990,120,0.684848485,1.033789605,0.121212121,5.63E-102,CpGisland,TRUE,U1,Pr-A
12026,cg15838326,-0.000000845,0.000000964,-0.876369833,0.381507594,loss,ns,5.62E-08,0.00000164,0.034308202,0.972653464,pos,ns,0.000357132,0.00047977,0.744380379,0.457210273,pos,ns,0.33988402,-0.0000139,0.0000165,-0.840780662,0.401118861,neg,ns,0.969794931,Ncor1,Ncor1_threeUTR,11,62403397,62403446,62403445,62403446,50,-,TCATCACTAGTCTTAAATGAAAAAGCTTCATTATCTTACTTCATCATGCG,3' UTR,11,62316426,62438515,122090,2,Ncor1-204,35069,Ncor1-204;Ncor1-201;Ncor1-205;Ncor1-206;Ncor1-208;Ncor1-212;Ncor1-207;Ncor1-203,Ncor1;Ncor1;Ncor1;Ncor1;Ncor1;Ncor1;Ncor1;Ncor1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,10,20185,ENSMUSG00000018501,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6519,cg01081765,-0.00000161,0.0000027,-0.597549786,0.550576611,loss,ns,0.000000157,0.00000459,0.03425805,0.972693424,pos,ns,0.00267429,0.001344208,1.989492099,0.047525351,pos,ns,1.323074671,-0.0000962,0.0000462,-2.081929305,0.038168932,neg,ns,0.943906811,Strbp,Strbp_threeUTR,2,37580749,37580798,37580749,37580750,50,+,CGAGGAGAACGAGAATAAAGTGAGATAAACGTGCTGAAAACTGCTTAAAA,3' UTR,2,37483228,37647219,163992,2,Strbp-207,66421,Strbp-207;Strbp-201;Strbp-208;Strbp-209;Strbp-202,Strbp;Strbp;Strbp;Strbp;Strbp,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,7,20744,ENSMUSG00000026915,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25461,cg20291654,-0.00000399,0.00000214,-1.866401277,0.062929279,loss,ns,-0.000000124,0.00000363,-0.034194488,0.972744069,neg,ns,0.000370501,0.001062985,0.348547417,0.727665702,pos,ns,0.138068095,-0.0000103,0.0000366,-0.280597589,0.779206234,neg,ns,0.947920313,Snap25,Snap25_Exon,2,136769759,136769808,136769759,136769760,50,+,CGAAGAAGGCATGAACCATATCAACCAAGACATGAAGGAGGCTGAGAAAA,"Exon (Snap25-202/Snap25, exon 5 of 8)",2,136713453,136782428,68976,1,Snap25-201,56306,Snap25-201;Snap25-202,Snap25;Snap25,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,9,20614,ENSMUSG00000027273,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21500,cg06910273,0.0000385,0.00000506,7.603479104,3.46E-13,gain,yes,-0.000000294,0.0000086,-0.034149009,0.972780305,neg,ns,0.001325782,0.002519993,0.526105551,0.599191041,pos,ns,0.222434689,0.000238854,0.0000867,2.756150952,0.006194896,pos,ns,0.088059786,Bcl11b,Bcl11b_Promoter,12,108004067,108004116,108004115,108004116,50,-,CTGGGGCTGCCTCTGTACAATGGGATAAAATTCAAGTTCAAGTGCGGACG,Promoter (<=1kb),12,107910403,108003602,93200,2,Bcl11b-201,-514,Bcl11b-201;Bcl11b-202;Bcl11b-203,Bcl11b;Bcl11b;Bcl11b,0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,8,39,58208,ENSMUSG00000048251,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
4649,cg17289116,-0.00000254,0.00000165,-1.539369838,0.124734114,loss,ns,-9.54E-08,0.0000028,-0.034051497,0.972858,neg,ns,0.000754613,0.000820845,0.919311869,0.358647232,pos,ns,0.445332516,-0.0000521,0.0000282,-1.845030288,0.065986823,neg,ns,0.955251102,Cacna1d,Cacna1d_threeUTR,14,30051594,30051643,30051594,30051595,50,-,CGGTTTCTCAGTATCACTTGCAGGTGGAATTGAAGGCCTTTGGACATGCA,3' UTR,14,30039939,30082758,42820,2,Cacna1d-212,31115,Cacna1d-212;Cacna1d-202;Cacna1d-201;Cacna1d-208;Cacna1d-209;Cacna1d-214;Cacna1d-204;Cacna1d-207;Cacna1d-211;Cacna1d-220,Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d,0;0;0;0;0;0;0;0;-1345;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,13,26,12289,ENSMUSG00000015968,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24936,cg22815632,-0.0000728,0.00000936,-7.77246104,1.14E-13,loss,yes,0.000000541,0.0000159,0.034028474,0.972876344,pos,ns,-0.011222486,0.00466052,-2.407990088,0.016624287,neg,ns,1.779256961,0.000165353,0.000160275,1.031681495,0.303025558,pos,ns,0.898619725,Adgrb2,Adgrb2_Intron,4,129995397,129995446,129995445,129995446,50,+,CTTGTTATTTTTGGTGAGTTGAGCCATAAATTTGTGCCATCTTGCTGCCG,"Intron (Adgrb2-207/Adgrb2, intron 2 of 27)",4,129984870,130022633,37764,1,Adgrb2-207,10527,Adgrb2-207;Adgrb2-205;Adgrb2-208;Adgrb2-204;Adgrb2-201;Adgrb2-202;Adgrb2-206,Adgrb2;Adgrb2;Adgrb2;Adgrb2;Adgrb2;Adgrb2;Adgrb2,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,8,230775,ENSMUSG00000028782,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9738,cg10571743,-0.00000106,0.000000752,-1.411949221,0.158967897,loss,ns,-4.34E-08,0.00000128,-0.033960145,0.972930787,neg,ns,-0.000181651,0.00037418,-0.48546493,0.627689502,neg,ns,0.202255135,-0.0000135,0.0000129,-1.050559935,0.29427902,neg,ns,0.02589859,Bbx,Bbx_Intron,16,50430360,50430409,50430360,50430361,50,-,CGTGTCATTAGCAGGACAGGCAATGGTTTCAAAGCCCCAGGCCAATGACC,"Intron (Bbx-208/Bbx, intron 1 of 16)",16,50191844,50432390,240547,2,Bbx-208,1981,Bbx-208;Bbx-201;Bbx-203;Bbx-202;Bbx-204;Bbx-207;Bbx-209;Bbx-206,Bbx;Bbx;Bbx;Bbx;Bbx;Bbx;Bbx;Bbx,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,10,70508,ENSMUSG00000022641,conserved gene and region,16,50429787,50430361,575,*,575,66,0.72,0.895786616,0.114782609,1.36E-54,CpGisland,TRUE,U2,Pr-W
15502,cg07013496,-0.00000101,0.00000679,-0.148374159,0.882143959,loss,ns,-0.000000391,0.0000115,-0.033921602,0.972961498,neg,ns,-0.004616234,0.003379091,-1.366117251,0.17289235,neg,ns,0.762224222,-0.000102371,0.000116207,-0.880935378,0.379035264,neg,ns,0.777916647,Gm7503,Gm7503_Intergenic_upstream,18,81366498,81366547,81366498,81366499,50,+,CGATTATGATGACTCTCTGTGGTATTTGTGATGAGCTGGGGAATGTTCTG,Distal Intergenic,18,80997003,80997383,381,2,Gm7503-201,-369115,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,17,21,665124,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1809,cg14654599,0.0000312,0.00000916,3.412236803,0.000729844,gain,ns,-0.000000527,0.0000156,-0.033866703,0.97300524,neg,ns,0.017638374,0.004557344,3.870319067,0.000132546,pos,ns,3.877633404,-0.000124395,0.000156727,-0.793709585,0.427971633,neg,ns,0.28602005,Dll1,Dll1_Promoter,17,15381767,15381816,15381815,15381816,50,-,GGCTGTTTAATTTTTCACTAGCAATAACATCTGATCTAATCCTTAAATCG,Promoter (4-5kb),17,15374794,15376872,2079,2,Dll1-205,-4944,Dll1-205,Dll1,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,9,9,13388,ENSMUSG00000014773,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
24237,cg02958663,0.000000611,0.000002,0.306054737,0.759768405,gain,ns,-0.000000114,0.00000339,-0.033735709,0.973109614,neg,ns,-0.000302625,0.000993256,-0.304679617,0.760814616,neg,ns,0.118721153,-0.0000371,0.0000342,-1.085352485,0.278608865,neg,ns,0.957023054,Gm12902,Gm12902_Intergenic_downstream,4,124087186,124087235,124087234,124087235,50,+,ATATACTCCTTGGCGGAGTGACCCCTGAAATTAAACATTATTACAGAGCG,Distal Intergenic,4,123926234,123926555,322,1,Gm12902-201,160952,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,34,34,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23390,cg21431064,0.0000289,0.00001,2.880179165,0.004251341,gain,ns,0.000000574,0.000017,0.033721791,0.973120704,pos,ns,-0.011456134,0.004986811,-2.297286378,0.022268501,neg,ns,1.652309019,0.000483689,0.000171496,2.820411226,0.005105343,pos,ns,0.123477576,Sox21,Sox21_Intergenic_downstream,14,118230572,118230621,118230572,118230573,50,-,CGCTATTCATTCCGGCCAGCTGGATCGGCTGAAAAAAAAACCTTGTGAAA,Distal Intergenic,14,118233232,118237030,3799,2,Sox21-201,6458,Sox21-201,Sox21,6409,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,26,27,223227,ENSMUSG00000061517,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
16852,cg24226879,-0.000000848,0.0000183,-0.046311187,0.963092042,loss,ns,-0.00000104,0.0000311,-0.033551291,0.973256557,neg,ns,0.032919661,0.009113148,3.612326085,0.000353882,pos,ns,3.451141152,-0.000494338,0.0003134,-1.577337743,0.115737705,neg,ns,0.554655824,Dennd4c,Dennd4c_Exon,4,86779846,86779895,86779846,86779847,50,-,CGTGTTTCTGTGTTATAAGAAGTCTGTACCTGCTTCAAATGCAATAGCAT,"Exon (Dennd4c-201/Dennd4c, exon 4 of 26)",4,86748555,86830167,81613,1,Dennd4c-201,31291,Dennd4c-201;Dennd4c-202;Dennd4c-204;Dennd4c-203,Dennd4c;Dennd4c;Dennd4c;Dennd4c,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,329877,ENSMUSG00000038024,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11929,cg16610439,0.0000186,0.00000566,3.290205345,0.001116521,gain,ns,-0.000000322,0.00000961,-0.03350122,0.973296453,neg,ns,-0.001383126,0.002816139,-0.491142756,0.623673002,neg,ns,0.205043055,0.000137678,0.0000968,1.421611257,0.156144374,pos,ns,0.847991672,Gm13626,Gm13626_Intergenic_downstream,2,61686108,61686157,61686108,61686109,50,+,CGGAGAGCTGAAAATGTAAACACAAGCTGGTATTATGGTGTGACTGGCGG,Distal Intergenic,2,61706893,61707591,699,2,Gm13626-201,21434,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,8,,NA,mapped to different genes,2,61686048,61686109,62,*,62,9,0.629032258,1.468421053,0.14516129,1.18E-08,CpGisland,TRUE,U15,NS
5656,cg04641706,-0.0000518,0.000012,-4.309135228,0.000022,loss,ns,0.000000682,0.0000204,0.033400183,0.973376958,pos,ns,-0.015860008,0.00597999,-2.652179666,0.008408897,neg,ns,2.075260955,0.000335478,0.000205651,1.63129483,0.103843575,pos,ns,0.749757587,9230112D13Rik,9230112D13Rik_Exon,14,34512068,34512117,34512068,34512069,50,-,CGGAAACTGAACAATAGTGCTTGTTGCTTATGAGGCCATCAGGAAAAGCC,"Exon (9230112D13Rik-201/9230112D13Rik, exon 3 of 3)",14,34511621,34522801,11181,2,9230112D13Rik-201,10684,9230112D13Rik-201;Gm48953-201,9230112D13Rik;Gm48953,0;-4078,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,78243,ENSMUSG00000021797,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5186,cg20970027,0.00000251,0.00000214,1.170301313,0.24277863,gain,ns,-0.000000121,0.00000364,-0.033318747,0.973441846,neg,ns,0.002492082,0.001066206,2.337336516,0.020057918,pos,ns,1.697714153,-0.0000576,0.0000367,-1.570302534,0.117364839,neg,ns,0.94941856,Prrxl1,Prrxl1_threeUTR,14,32630622,32630671,32630670,32630671,50,+,CTGATTAAATTTTGTGTCCTTGAGGACTTTCAGGAAATTACTTTTGATCG,3' UTR,14,32599407,32649204,49798,1,Prrxl1-203,31215,Prrxl1-203;Prrxl1-204;Prrxl1-202;Prrxl1-201;Prrxl1-205,Prrxl1;Prrxl1;Prrxl1;Prrxl1;Prrxl1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,23,107751,ENSMUSG00000041730,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15661,cg06847460,-0.00000624,0.00000225,-2.771398919,0.005918852,loss,ns,-0.000000127,0.00000382,-0.033314256,0.973445425,neg,ns,-0.002228142,0.00111991,-1.989572361,0.047516453,neg,ns,1.323155984,0.0000905,0.0000385,2.350437111,0.019377833,pos,ns,0.947046347,Zfp236,Zfp236_threeUTR,18,82598964,82599013,82598964,82598965,50,+,CGCTTCATGTGCAGCTTCATGTTGCTCTTCTGCGTGAAGCCCATGACGCA,3' UTR,18,82593593,82692883,99291,2,Zfp236-201,93870,Zfp236-201;Zfp236-206;Zfp236-202;Zfp236-205,Zfp236;Zfp236;Zfp236;Zfp236,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,2,329002,ENSMUSG00000041258,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22188,cg06970764,-0.0000542,0.0000146,-3.705949619,0.000249361,loss,ns,0.000000827,0.0000249,0.033260601,0.973488177,pos,ns,-0.006563396,0.007281747,-0.901349084,0.368102475,neg,ns,0.434031263,0.0000463,0.000250419,0.184973445,0.85337082,pos,ns,0.659432996,Spata6,Spata6_Intergenic_upstream,4,111686362,111686411,111686410,111686411,50,-,ATTTTTATTACCATAAATAACTGAAATAATTATTGCTCTTAAGGGCCACG,Distal Intergenic,4,111719984,111829142,109159,1,Spata6-201,-33622,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,5,67946,ENSMUSG00000034401,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23211,cg14701026,0.0000941,0.00000868,10.83891139,2.00E-23,gain,yes,-0.00000049,0.0000148,-0.033253154,0.97349411,neg,ns,0.01384918,0.004321277,3.204881208,0.00149195,pos,ns,2.826245777,-0.0000644,0.000148608,-0.43333871,0.66507009,neg,ns,0.672231491,Rnf220,Rnf220_Intron,4,117490494,117490543,117490542,117490543,50,-,CAGACCATTTTCATTCAGGAAAATCAATAGACAACTTACTGTGATGTACG,"Intron (Rnf220-201/Rnf220, intron 1 of 14)",4,117271463,117497052,225590,2,Rnf220-201,6509,Rnf220-201;Rnf220-207;Rnf220-204,Rnf220;Rnf220;Rnf220,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
1120,cg24978660,-9.62E-08,0.00000215,-0.044680087,0.964391073,loss,ns,-0.000000121,0.00000366,-0.033134881,0.973588351,neg,ns,0.000152161,0.001071986,0.141942893,0.887217316,pos,ns,0.051969991,-0.0000315,0.0000369,-0.855495419,0.392937658,neg,ns,0.946798953,Gm14513,Gm14513_Promoter,X,11693066,11693115,11693114,11693115,50,-,TTTTCTCCCAATGCCTTAATGAGTGATGATTTCTAGAGACAATCAGATCG,Promoter (8-9kb),20,11684002,11684124,123,2,Gm14513-201,-8991,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,9,668984,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2491,cg09884146,-0.0000448,0.0000112,-4.015770351,0.0000744,loss,ns,0.000000626,0.000019,0.033055679,0.973651459,pos,ns,-0.015799017,0.005551867,-2.845712639,0.004726406,neg,ns,2.325468986,0.0002592,0.000190928,1.357578434,0.175584912,pos,ns,0.702203823,Spred2,Spred2_Intron,11,19979518,19979567,19979518,19979519,50,-,CGGTACAATGCAGTATATTTGTCAAGGAGACTGAATCATATATGGGGGAA,"Intron (Spred2-202/Spred2, intron 1 of 6)",11,19924375,20024026,99652,1,Spred2-202,55143,Spred2-202;Spred2-201;Spred2-203,Spred2;Spred2;Spred2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,13,114716,ENSMUSG00000045671,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1374,cg03844863,0.00000228,0.00000305,0.747583789,0.455277944,gain,ns,-0.000000171,0.00000519,-0.033018368,0.973681189,neg,ns,0.003730872,0.001519455,2.455401699,0.014621497,pos,ns,1.835008169,-0.000139575,0.0000523,-2.671083329,0.007959894,neg,ns,0.91086608,Pdzd2,Pdzd2_fiveUTR,15,12458246,12458295,12458246,12458247,50,-,CGCAGCATGATCAGGTAGATAAAGCCGCCATTCCAGCACTGCTCAGCCAG,5' UTR,15,12359711,12592556,232846,2,Pdzd2-201,134261,Pdzd2-201;Pdzd2-208;Pdzd2-206;Pdzd2-203;Pdzd2-205,Pdzd2;Pdzd2;Pdzd2;Pdzd2;Pdzd2,0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,5,68070,ENSMUSG00000022197,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24969,cg02293439,-0.000002,0.00000519,-0.384689017,0.700731607,loss,ns,-0.000000291,0.00000881,-0.033018011,0.973681473,neg,ns,0.00239576,0.002582117,0.927827635,0.354218815,pos,ns,0.450728375,-0.0000411,0.0000888,-0.462982865,0.643701491,neg,ns,0.108503603,Ebf4,Ebf4_Intron,2,130359038,130359087,130359086,130359087,50,-,AGAGTCCCACTTAAGAAGATGCTAATTGTGACATTTTTACATGATTAACG,"Intron (Ebf4-203/Ebf4, intron 8 of 17)",2,130295169,130370481,75313,1,Ebf4-203,63869,Ebf4-203;Ebf4-201;Ebf4-202;Ebf4-204;Ebf4-205;Ebf4-206,Ebf4;Ebf4;Ebf4;Ebf4;Ebf4;Ebf4,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,3,228598,ENSMUSG00000053552,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
614,cg25072946,-0.0000355,0.00000614,-5.781058937,1.81E-08,loss,yes,0.000000343,0.0000104,0.032889173,0.973784132,pos,ns,-0.006580541,0.003054486,-2.154385419,0.031980194,neg,ns,1.495118907,-0.0000149,0.000105044,-0.141719573,0.887393569,neg,ns,0.851614441,Mark2,Mark2_threeUTR,19,7275905,7275954,7275953,7275954,50,-,AACAGCAGAGAAATAAATTAAGGGATGCAGTGGCCACCACCAGCCAAGCG,3' UTR,19,7275396,7341819,66424,2,Mark2-202,65865,Mark2-202;Mark2-206;Mark2-201;Mark2-221;Mark2-209;Mark2-203;Mark2-211;Mark2-207;Mark2-218;Mark2-215;Mark2-212;Mark2-208;Mark2-219;Mark2-204;Rcor2-201;Rcor2-202;Rcor2-203,Mark2;Mark2;Mark2;Mark2;Mark2;Mark2;Mark2;Mark2;Mark2;Mark2;Mark2;Mark2;Mark2;Mark2;Rcor2;Rcor2;Rcor2,0;0;0;0;0;0;0;0;0;0;0;0;0;5987;0;0;4953,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,10,13728,ENSMUSG00000024969,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
188,cg12378449,0.000000556,0.00000431,0.128782884,0.89761296,gain,ns,0.000000241,0.00000733,0.03287974,0.973791648,pos,ns,-0.000214011,0.002147559,-0.099652962,0.920684257,neg,ns,0.035889283,-0.000107147,0.0000739,-1.450783846,0.147851157,neg,ns,0.81348198,Lrfn4,Lrfn4_Exon,19,4612363,4612412,4612363,4612364,50,+,CGGCCCCGAACCAGCAAGGCCACAGTGAAGACCAGTAAGGCAGCCACCAG,"Exon (Lrfn4-202/Lrfn4, exon 3 of 3)",19,4611785,4615667,3883,2,Lrfn4-202,3255,Lrfn4-202;Lrfn4-201;Pcx-201;Pcx-204;Pcx-202,Lrfn4;Lrfn4;Pcx;Pcx;Pcx,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,225875,ENSMUSG00000045045,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19972,cg16501572,-0.00000253,0.00000129,-1.971605088,0.049543633,loss,ns,-7.18E-08,0.00000218,-0.032876509,0.973794223,neg,ns,0.001274362,0.000639757,1.991948226,0.047253713,pos,ns,1.325564058,-0.0000253,0.000022,-1.147995298,0.251855621,neg,ns,0.034891116,Inppl1,Inppl1_fiveUTR,7,101838024,101838073,101838024,101838025,50,+,CGGCTATTTTTATTATTAATTAAGGAGAAACGAAGGTGACAGCTGTGTAA,Promoter (<=1kb),7,101822632,101838229,15598,2,Inppl1-201,156,Folr2-201;Folr2-203;Folr2-205;Folr2-202;Folr2-204;Inppl1-201;Inppl1-202;Inppl1-203;Inppl1-209;Inppl1-206;Inppl1-205,Folr2;Folr2;Folr2;Folr2;Folr2;Inppl1;Inppl1;Inppl1;Inppl1;Inppl1;Inppl1,7244;19121;3103;7258;7231;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,2,16332,ENSMUSG00000032737,conserved gene but different region,7,101838007,101838176,170,*,170,15,0.541176471,1.205673759,0.088235294,6.13E-11,CpGisland,TRUE,U1,Pr-A
9984,cg05456580,0.00000347,0.00000553,0.628217569,0.530323964,gain,ns,0.000000308,0.00000939,0.032851511,0.973814142,pos,ns,0.007796139,0.002750307,2.834642869,0.004888933,pos,ns,2.310785928,-0.000245783,0.0000946,-2.598595212,0.009807918,neg,ns,0.894801116,Hectd1,Hectd1_Exon,12,51774660,51774709,51774708,51774709,50,+,GTTCCAATCCAGTAAATGATTCCATTTTCATCAAAATCATGCTGGTGCCG,"Exon (Hectd1-201/Hectd1, exon 21 of 43)",12,51743722,51829536,85815,2,Hectd1-201,54827,Hectd1-201;Hectd1-202,Hectd1;Hectd1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,19,19,207304,ENSMUSG00000035247,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8140,cg08933507,-0.0000263,0.00000598,-4.40367216,0.0000147,loss,ns,-0.000000332,0.0000102,-0.032688855,0.973943748,neg,ns,0.001211611,0.002977104,0.406976314,0.684306239,pos,ns,0.1647495,-0.000290007,0.000102382,-2.832589119,0.004919639,neg,ns,0.91344289,Ebf1,Ebf1_Intron,11,44794644,44794693,44794644,44794645,50,-,CGAGTCCTAAAGGGCATTAATTATTTTCAGTGTCAGCTGGTTGTATAACT,"Intron (Ebf1-203/Ebf1, intron 6 of 15)",11,44617317,45004995,387679,1,Ebf1-203,177327,Ebf1-203;Ebf1-202;Ebf1-201,Ebf1;Ebf1;Ebf1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,65,80,13591,ENSMUSG00000057098,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3466,cg02286447,-0.00000304,0.00000458,-0.663857337,0.507275042,loss,ns,0.000000254,0.00000778,0.032685416,0.973946489,pos,ns,-0.000524833,0.002280439,-0.230145571,0.818130447,neg,ns,0.087177444,-0.0000014,0.0000784,-0.017818488,0.985795118,neg,ns,0.908466846,Bcl11a,Bcl11a_Exon,11,24163284,24163333,24163284,24163285,50,-,CGCGGGTTGGTATCCCTTCAGGACTAGGTGCAGAATGTCCTTCCCAGCCA,"Exon (Bcl11a-201/Bcl11a, exon 4 of 5)",11,24078056,24173194,95139,1,Bcl11a-201,85228,Bcl11a-201;Bcl11a-203;Bcl11a-202;Bcl11a-204;Bcl11a-206,Bcl11a;Bcl11a;Bcl11a;Bcl11a;Bcl11a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,51,98,14025,ENSMUSG00000000861,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16687,cg19688333,0.00000657,0.00000243,2.701122725,0.007290645,gain,ns,0.000000135,0.00000413,0.032618436,0.973999859,pos,ns,0.001194593,0.001211235,0.986260173,0.324774596,pos,ns,0.488417948,-0.000019,0.0000417,-0.455632667,0.648973131,neg,ns,0.922742086,Stap1,Stap1_Exon,5,86090964,86091013,86091012,86091013,50,+,ATGATCCTGAGGCCTGGTAGTGACAGTAGAAACTACTCCATCACTATTCG,"Exon (Stap1-206/Stap1, exon 6 of 9)",5,86071746,86106125,34380,1,Stap1-206,19218,Stap1-206;Stap1-202;Stap1-205;Stap1-203;Stap1-201;Stap1-204,Stap1;Stap1;Stap1;Stap1;Stap1;Stap1,0;0;19190;19181;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,56792,ENSMUSG00000029254,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13887,cg09333440,0.0000278,0.00000616,4.513350317,0.00000907,gain,ns,0.000000341,0.0000105,0.03260251,0.974012549,pos,ns,0.006270104,0.003064547,2.046013268,0.041598547,pos,ns,1.380921839,-0.000175989,0.00010539,-1.669889064,0.095950697,neg,ns,0.19353191,Sp9,Sp9_Promoter,2,73268999,73269048,73268999,73269000,50,+,CGTGCTCTCTGTCTGGGTTTGGAAGAAATTGTTTTATATTCACCTCTTTA,Promoter (2-3kb),2,73271925,73277471,5547,1,Sp9-201,-2877,Sp9-201;Sp9-202,Sp9;Sp9,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,6,21,381373,ENSMUSG00000068859,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
8809,cg15112775,-0.00000389,0.00000612,-0.634981224,0.525909039,loss,ns,-0.000000339,0.0000104,-0.032578956,0.974031317,neg,ns,-0.004916947,0.003045855,-1.61430749,0.107478106,neg,ns,0.968679995,0.000142311,0.000104747,1.358615569,0.175256203,pos,ns,0.753842358,Kcnip2,Kcnip2_Exon,19,45797073,45797122,45797121,45797122,50,-,CACATGAGAGGCACTTGCTTTCACTGACTGAGGGCAGGGCTTGGGGCCCG,"Exon (Kcnip2-202/Kcnip2, exon 2 of 9)",19,45792346,45803574,11229,2,Kcnip2-211,6452,Kcnip2-205;Kcnip2-211;Kcnip2-202;Kcnip2-204;Kcnip2-209;Kcnip2-203;Kcnip2-201;Kcnip2-206;Kcnip2-208;Kcnip2-210;Kcnip2-207,Kcnip2;Kcnip2;Kcnip2;Kcnip2;Kcnip2;Kcnip2;Kcnip2;Kcnip2;Kcnip2;Kcnip2;Kcnip2,-2774;0;0;0;0;0;0;-1369;0;0;-29,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,80906,ENSMUSG00000025221,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16550,cg12764461,0.00000342,0.00000509,0.672059467,0.5020464,gain,ns,0.000000281,0.00000864,0.032556568,0.974049156,pos,ns,-0.002875934,0.002530909,-1.136324699,0.256698362,neg,ns,0.590576903,0.000228513,0.000087,2.625445188,0.009082768,pos,ns,0.919739837,Camkmt,Camkmt_Intron,17,85394387,85394436,85394387,85394388,50,+,CGCAAATGGAATGATAAAAGTATTGACTGATTTGATTGAATGATTAAAAT,"Intron (Camkmt-201/Camkmt, intron 5 of 10)",17,85090552,85458588,368037,1,Camkmt-201,303835,Camkmt-201,Camkmt,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,41,44,73582,ENSMUSG00000071037,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6259,cg05149197,0.0000152,0.00000998,1.518449136,0.12992037,gain,ns,-0.000000551,0.000017,-0.032502914,0.974091909,neg,ns,-0.012735008,0.0049666,-2.564129906,0.01081452,neg,ns,1.965992768,0.000284504,0.000170801,1.665704207,0.096782499,pos,ns,0.823312461,Tenm2,Tenm2_Intron,11,36644355,36644404,36644355,36644356,50,-,CGAAAGTGCCCCCCGATTTAATGTGAACGATTTGTCAAACGTGCTGTGAT,"Intron (Tenm2-202/Tenm2, intron 4 of 30)",11,36006656,37235882,1229227,2,Tenm2-202,591478,Tenm2-202;Tenm2-208;Tenm2-201;Tenm2-204;Tenm2-205,Tenm2;Tenm2;Tenm2;Tenm2;Tenm2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,47,84,23964,ENSMUSG00000049336,conserved gene and region,11,36644308,36644496,189,*,189,13,0.566137566,0.875623664,0.068783069,0.000000034,CpGisland,TRUE,U15,NS
21355,cg22652525,0.0000181,0.00000321,5.623835415,4.17E-08,gain,yes,-0.000000177,0.00000546,-0.032441179,0.974141101,neg,ns,0.001974782,0.001598983,1.235024205,0.217756722,pos,ns,0.66202843,-0.0000409,0.000055,-0.743243616,0.457897091,neg,ns,0.094963734,Kcnc4,Kcnc4_Exon,3,107458798,107458847,107458846,107458847,50,-,CTTGGCCATCTCCTCCTTCAGACATGTTTTGGACGGAGGCTTGTTCCCCG,Promoter (<=1kb),3,107438303,107459552,21250,2,Kcnc4-201,705,Kcnc4-201;Kcnc4-202,Kcnc4;Kcnc4,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,12,99738,ENSMUSG00000027895,conserved gene and region,3,107458518,107458984,467,*,467,47,0.665952891,0.908861284,0.100642398,4.28E-36,CpGisland,TRUE,U13,Hc-P
171,cg00724499,0.0000503,0.0000119,4.241119761,0.0000294,gain,ns,0.000000654,0.0000202,0.032429384,0.974150499,pos,ns,0.016377033,0.005905531,2.773168536,0.005887547,pos,ns,2.2300656,-0.000275658,0.000203091,-1.357313756,0.175668873,neg,ns,0.229799454,Col1a2,Col1a2_fiveUTR,6,4505813,4505862,4505861,4505862,50,+,AGGAGTCTGCATGTCTAAGTGCTAGACATGCTCAGCTTTGTGGATACGCG,Promoter (<=1kb),6,4504814,4516419,11606,1,Col1a2-205,999,Col1a2-205;Col1a2-201;Col1a2-204;Col1a2-203,Col1a2;Col1a2;Col1a2;Col1a2,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,1,12843,ENSMUSG00000029661,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25221,cg08803913,-0.00000384,0.00000104,-3.681777166,0.000273137,loss,ns,-5.71E-08,0.00000177,-0.032245929,0.97429668,neg,ns,-0.00023555,0.000518595,-0.454208481,0.649996631,neg,ns,0.187088895,-0.0000221,0.0000178,-1.236638151,0.217157508,neg,ns,0.02710388,Arid1a,Arid1a_Promoter,4,133757450,133757499,133757498,133757499,50,-,TCAGTTGACGGAAGCCAGAAGCAGAGTTCAAAGCCTGGCGTGGATTTCCG,Promoter (<=1kb),4,133679941,133756769,76829,2,Arid1a-201,-730,Arid1a-202;Arid1a-205;Arid1a-201;Arid1a-203,Arid1a;Arid1a;Arid1a;Arid1a,0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,4,31,93760,ENSMUSG00000007880,mapped to different genes,4,133757142,133757554,413,*,413,27,0.595641647,0.7375,0.065375303,6.90E-16,CpGisland,TRUE,U1,Pr-A
25947,cg06570740,-0.00000274,0.00000313,-0.876686736,0.381335664,loss,ns,-0.000000171,0.00000531,-0.032203567,0.974330435,neg,ns,0.002103245,0.001557058,1.350781212,0.177750666,pos,ns,0.750188764,-0.0000456,0.0000535,-0.851995853,0.394874102,neg,ns,0.894301385,Spen,Spen_Exon,4,141522036,141522085,141522084,141522085,50,-,TACAAAATACCTGCCTACAGAAACCTTGGAACTTACCCATCAAGTCTCCG,"Exon (Spen-201/Spen, exon 2 of 15)",4,141467890,141538449,70560,2,Spen-201,16364,Spen-201;Spen-202;Spen-205,Spen;Spen;Spen,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,17,19,56381,ENSMUSG00000040761,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23687,cg15294367,-0.00000321,0.00000179,-1.792389402,0.074045593,loss,ns,-9.78E-08,0.00000304,-0.032171213,0.974356216,neg,ns,-0.000353476,0.000890596,-0.396898953,0.691715077,neg,ns,0.160072758,-0.00000433,0.0000306,-0.141273757,0.88774544,neg,ns,0.942133054,Hs6st3,Hs6st3_Exon,14,119869112,119869161,119869112,119869113,50,+,CGCATGCTGGCTGACCTCAGCCTGGTGGGCTGCTATAACTTGACTTTCAT,"Exon (Hs6st3-201/Hs6st3, exon 2 of 2)",14,119138341,119869815,731475,1,Hs6st3-201,730771,Hs6st3-201,Hs6st3,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,5,50787,ENSMUSG00000053465,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
595,cg02287984,0.000317175,0.0000173,18.29896036,3.10E-51,gain,yes,0.000000946,0.0000294,0.032131856,0.974387577,pos,ns,0.010424406,0.008626785,1.208376721,0.227823341,pos,ns,0.642401784,0.000219751,0.000296674,0.740713691,0.459427726,pos,ns,0.330990133,Macrod1,Macrod1_Intron,19,7143886,7143935,7143934,7143935,50,+,CTGAAAACAGCTCAACTGAAACAAATAATTACCAAAGTCCTTCCAGCGCG,"Intron (Macrod1-201/Macrod1, intron 3 of 10)",19,7056810,7198057,141248,1,Macrod1-201,87076,Macrod1-201,Macrod1,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,11,11,107227,ENSMUSG00000036278,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U4,Pr-F
24789,cg04008656,-5.33E-08,0.000000332,-0.160361093,0.87270108,loss,ns,-1.81E-08,0.000000565,-0.032092741,0.974418745,neg,ns,0.000380573,0.000165482,2.29977875,0.022124966,pos,ns,1.655117382,-0.0000157,0.00000569,-2.752401723,0.006264532,neg,ns,0.0093952,Tial1,Tial1_fiveUTR,7,128461117,128461166,128461165,128461166,50,+,GTACTCACAGAGTCCGGGGCTGCCCGTCGTCTTCCATCATGGTGGGTGCG,Promoter (<=1kb),7,128439777,128461672,21896,2,Tial1-202,506,Tial1-202;Tial1-208;Tial1-203;Tial1-211;Tial1-214;Tial1-201;Tial1-204;Tial1-209,Tial1;Tial1;Tial1;Tial1;Tial1;Tial1;Tial1;Tial1,0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,5,21843,ENSMUSG00000030846,conserved gene and region,7,128461003,128461322,320,*,320,30,0.725,0.714285714,0.09375,2.98E-22,CpGisland,TRUE,U1,Pr-A
15320,cg24089419,0.00000791,0.0000033,2.395375122,0.01719639,gain,ns,0.00000018,0.00000561,0.032067947,0.974438502,pos,ns,-0.001139356,0.001643731,-0.693152187,0.488733028,neg,ns,0.310928311,-0.0000575,0.0000565,-1.016837834,0.310023514,neg,ns,0.877756536,Rhbdl3,Rhbdl3_Exon,11,80331846,80331895,80331894,80331895,50,-,CCTGGAGATGGTGCATGGAGCCACCCGAATTGGGCTTGTCTACGTGGCCG,"Exon (Rhbdl3-201/Rhbdl3, exon 6 of 9)",11,80300912,80355955,55044,1,Rhbdl3-201,30934,Rhbdl3-201,Rhbdl3,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,246104,ENSMUSG00000017692,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1373,cg23845691,-0.0000124,0.00000764,-1.625805015,0.10500726,loss,ns,-0.000000414,0.000013,-0.031877458,0.974590289,neg,ns,-0.001004285,0.003802502,-0.264111662,0.79186937,neg,ns,0.101346455,-0.000247934,0.000130768,-1.895986982,0.05889153,neg,ns,0.817725584,Cadps,Cadps_threeUTR,14,12457718,12457767,12457718,12457719,50,+,CGAAAAAGTAGGCATTTGTGGGATGCCTAGAGGGATGTTAACTGGTAGAT,3' UTR,14,12372563,12823053,450491,2,Cadps-210,365286,Cadps-210;Cadps-202;Cadps-203;Cadps-204;Cadps-201;Cadps-208;Cadps-206,Cadps;Cadps;Cadps;Cadps;Cadps;Cadps;Cadps,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,8,34,27062,ENSMUSG00000054423,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10479,cg11132800,-0.00000727,0.00000524,-1.389305791,0.165736877,loss,ns,0.000000282,0.0000089,0.031723671,0.974712833,pos,ns,-0.00261638,0.002605947,-1.004003371,0.316160024,neg,ns,0.500093044,-0.0000363,0.0000896,-0.40465636,0.686009189,neg,ns,0.844789605,Hecw2,Hecw2_Exon,1,53827895,53827944,53827943,53827944,50,+,CTTAGTCGTTGTTCATTGTTGAATCTTTCCACTGCAGCCCAGAACCACCG,"Exon (Hecw2-203/Hecw2, exon 27 of 29)",1,53806876,54194048,387173,2,Hecw2-203,366104,Hecw2-203;Hecw2-201;Hecw2-205,Hecw2;Hecw2;Hecw2,0;0;13227,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,6,329152,ENSMUSG00000042807,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12582,cg18863048,0.0000152,0.0000079,1.928454549,0.054711575,gain,ns,-0.000000424,0.0000134,-0.03158112,0.974826423,neg,ns,0.009584148,0.00393367,2.43643956,0.015395325,pos,ns,1.812611126,-0.000237085,0.000135279,-1.752570426,0.080664355,neg,ns,0.753880241,Scn3a,Scn3a_Exon,2,65508424,65508473,65508472,65508473,50,+,CCTGGCACCATCCTGGATGACATACTGGCCTGACTAACGTTACTGTTGCG,"Exon (Scn3a-201/Scn3a, exon 12 of 27)",2,65457118,65567492,110375,2,Scn3a-201,59019,Scn3a-201;Scn3a-202;Scn3a-206;Scn3a-208;Scn3a-207,Scn3a;Scn3a;Scn3a;Scn3a;Scn3a,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,20269,ENSMUSG00000057182,conserved gene and region,2,65508461,65508647,187,*,187,12,0.534759358,0.910714286,0.064171123,0.000000285,CpGisland,TRUE,U15,NS
4485,cg24746619,-0.0000122,0.0000093,-1.314154989,0.189765615,loss,ns,0.000000495,0.0000158,0.031357208,0.975004846,pos,ns,-0.000743914,0.004628153,-0.160736595,0.872405559,neg,ns,0.059281576,-0.000055,0.000159162,-0.345250633,0.730140101,neg,ns,0.79886414,Ntm,Ntm_Intron,9,29075177,29075226,29075177,29075178,50,+,CGACAGATAGAACATTTCACGGCGAATTGGACGCACATTCAACTGGAAAT,"Intron (Ntm-201/Ntm, intron 4 of 7)",9,28994750,29963129,968380,2,Ntm-201,887903,Ntm-201;Ntm-203;Ntm-202;Ntm-205;Ntm-208;Ntm-204,Ntm;Ntm;Ntm;Ntm;Ntm;Ntm,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,27,32,235106,ENSMUSG00000059974,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3548,cg09820740,-0.0000219,0.00000964,-2.273562267,0.023675996,loss,ns,-0.000000513,0.0000164,-0.031326709,0.97502915,neg,ns,0.007201633,0.004796021,1.501585089,0.134222171,pos,ns,0.872175741,-0.000467528,0.000164935,-2.834625418,0.004889193,neg,ns,0.767325785,Gm12067,Gm12067_Intron,11,24485171,24485220,24485219,24485220,50,+,CAAACTGTATATAAAAAACATGTAAAACAGCATCAATGAATTTCAAAGCG,"Intron (Gm12068-201/Gm12068-201, intron 2 of 3)",11,24552438,24553962,1525,2,Gm12067-201,68742,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,58,100417843,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2250,cg23280517,-0.00015175,0.0000681,-2.228157979,0.026587113,loss,ns,0.00000362,0.000115702,0.031300519,0.975050018,pos,ns,-0.037933122,0.033896826,-1.119075942,0.263974101,neg,ns,0.57843868,0.002187747,0.001165709,1.876751845,0.061491272,pos,ns,0.741980757,Gm30341,Gm30341_Intergenic_downstream,3,18777557,18777606,18777557,18777558,50,-,CGGTTGAACATTTTAACTAATTAATTATGATTGATTGCTTGTTACTAATC,Distal Intergenic,3,18753077,18753365,289,1,Gm30341-201,24529,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,23,102632201,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16645,cg24183611,0.000000365,0.00000414,0.088097385,0.929856157,gain,ns,0.00000022,0.00000703,0.031252543,0.975088248,pos,ns,-0.003494415,0.002060538,-1.695875152,0.090913495,neg,ns,1.041371648,0.000215133,0.0000709,3.035952411,0.002601156,pos,ns,0.898277216,Bcas3,Bcas3_Intron,11,85814498,85814547,85814498,85814499,50,-,CGACTCCTGGCCACTTGTTGTCTGCGCTTGTCTGTCCATTTATACAACCT,"Intron (Bcas3-205/Bcas3, intron 26 of 27)",11,85353167,85826058,472892,1,Bcas3-205,461331,Bcas3-205;Bcas3-206;Bcas3-201;Bcas3-202;Bcas3-216;Bcas3-212;Bcas3-203;Bcas3-207;Bcas3-215,Bcas3;Bcas3;Bcas3;Bcas3;Bcas3;Bcas3;Bcas3;Bcas3;Bcas3,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,24,192197,ENSMUSG00000059439,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9098,cg25731101,-0.00000192,0.00000122,-1.575156221,0.11624034,loss,ns,6.43E-08,0.00000207,0.031126457,0.975188721,pos,ns,0.00016818,0.00060551,0.277749376,0.781389898,pos,ns,0.107132208,-0.0000214,0.0000208,-1.028511431,0.304511133,neg,ns,0.964350454,Gm4791,Gm4791_Intergenic_upstream,9,46864773,46864822,46864821,46864822,50,+,AAATTATTAGAGTGAGGACATCGCCCGCCTCCTCATAATTTGCTTAACCG,Distal Intergenic,9,46998741,47003860,5120,1,Gm4791-201,-133919,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,9,18,215467,ENSMUSG00000094893,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24468,cg27423587,-0.000000134,0.000000317,-0.423544862,0.672191484,loss,ns,1.67E-08,0.000000538,0.031051265,0.975248637,pos,ns,-0.000415757,0.000157528,-2.639253049,0.008728904,neg,ns,2.05904026,0.0000109,0.00000542,2.019209815,0.044325801,pos,ns,0.99340153,Ago1,Ago1_threeUTR,4,126460421,126460470,126460421,126460422,50,+,CGAACCAGACCTCGCGCCCACCCCCCAGCGGGTGGTAGTAGCCCTCAGGC,3' UTR,4,126435012,126468421,33410,2,Ago1-207,7951,Ago1-207;Ago1-201;Ago1-206;Ago1-202;Ago1-205;Ago1-203,Ago1;Ago1;Ago1;Ago1;Ago1;Ago1,0;0;0;0;0;-296,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,11,13,236511,ENSMUSG00000041530,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15714,cg24530271,-0.0000212,0.00000438,-4.836188808,0.00000209,loss,ns,0.000000231,0.00000745,0.031035257,0.975261393,pos,ns,-0.00733958,0.002181685,-3.364179184,0.000864144,neg,ns,3.063413656,0.000149366,0.000075,1.990797428,0.047380823,pos,ns,0.856954686,Zfp516,Zfp516_Exon,18,82956392,82956441,82956392,82956393,50,-,CGAGGTGTGTGGCCAGGCCTTCAGCCAGACCTGGTTCCTGAAGGCGCACA,"Exon (Zfp516-202/Zfp516, exon 2 of 6)",18,82910879,83005314,94436,1,Zfp516-202,45513,Zfp516-203;Zfp516-202;Zfp516-206;Zfp516-204;Zfp516-201;Zfp516-207,Zfp516;Zfp516;Zfp516;Zfp516;Zfp516;Zfp516,0;0;0;0;0;38638,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,6,329003,ENSMUSG00000058881,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
24399,cg17101462,-0.00000303,0.00000479,-0.632296927,0.527658932,loss,ns,0.000000251,0.00000813,0.030853725,0.975406049,pos,ns,0.001146504,0.002381902,0.481339828,0.630614578,pos,ns,0.200235994,-0.00000614,0.0000819,-0.075002775,0.94026088,neg,ns,0.766405294,Ncapd2,Ncapd2_threeUTR,6,125184500,125184549,125184500,125184501,50,+,CGGTTCTTCTGGTGATTAATGGTGGGATTCTCCAGAAGGCGGTAGCAACA,3' UTR,6,125168007,125191701,23695,2,Ncapd2-201,7152,Ncapd2-201;Ncapd2-210;Ncapd2-203;Ncapd2-212,Ncapd2;Ncapd2;Ncapd2;Ncapd2,0;0;0;6941,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,68298,ENSMUSG00000038252,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19762,cg04748006,0.0000168,0.00000981,1.712106761,0.087877053,gain,ns,-0.000000513,0.0000167,-0.030779559,0.975465149,neg,ns,0.000902982,0.004880791,0.185007369,0.853344235,pos,ns,0.068875741,-0.0000242,0.00016785,-0.1443843,0.885290834,neg,ns,0.831956617,Scn8a,Scn8a_threeUTR,15,101041301,101041350,101041349,101041350,50,+,TCTTCAGGCTGAGGAGGACTTGCTCAGGCCGATTCCAAACATTGTGCTCG,3' UTR,15,100870683,101045929,175247,1,Scn8a-201,170618,Scn8a-201;Scn8a-204;Scn8a-213;Scn8a-203;Scn8a-205;Scn8a-208;Tmdd1-201,Scn8a;Scn8a;Scn8a;Scn8a;Scn8a;Scn8a;Tmdd1,0;0;0;0;0;0;6047,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,6,24,20273,ENSMUSG00000023033,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
13598,cg21679470,-0.00000629,0.00000632,-0.995328132,0.320352971,loss,ns,0.00000033,0.0000107,0.030767419,0.975474823,pos,ns,0.002646021,0.003146119,0.841042782,0.400972233,pos,ns,0.396885701,-0.000112838,0.000108195,-1.042918108,0.297798839,neg,ns,0.90184034,Gm48818,Gm48818_Intron,11,71522432,71522481,71522432,71522433,50,-,CGGGCAGAACAAATATTCCCATTGCTCATGTCAGGTACAGAAATGGAAAT,"Intron (9230020A06Rik-204/9230020A06Rik-204, intron 2 of 4)",11,71696271,71697516,1246,2,Gm48818-201,175084,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,5,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24660,cg19689503,0.0000442,0.0000121,3.660959275,0.000295309,gain,ns,-0.00000063,0.0000205,-0.030713879,0.975517487,neg,ns,0.038646936,0.006012767,6.427479113,4.89E-10,pos,ns,9.310612974,-0.001008131,0.000206779,-4.875411224,0.00000174,neg,yes,0.408865729,Ndufa4l2,Ndufa4l2_threeUTR,10,127517120,127517169,127517120,127517121,50,-,CGTGGGCAAAATACAATTTCATTTAACAAATTGAATTTGCTGCGCCTGCT,3' UTR,10,127514967,127517154,2188,1,Ndufa4l2-201,2153,Ndufa4l2-203;Ndufa4l2-202;Ndufa4l2-201;Shmt2-206;Shmt2-201;Shmt2-207;Shmt2-203;Shmt2-204;Shmt2-205;Shmt2-202,Ndufa4l2;Ndufa4l2;Ndufa4l2;Shmt2;Shmt2;Shmt2;Shmt2;Shmt2;Shmt2;Shmt2,2153;2153;0;0;0;1607;1611;5233;5232;5195,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,threeUTR,3,3,407790,ENSMUSG00000040280,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
3097,cg03862352,0.0000423,0.00000529,7.988772907,2.70E-14,gain,yes,0.000000276,0.00000899,0.030684312,0.975541048,pos,ns,0.005312576,0.002632724,2.017900684,0.044462801,pos,ns,1.352003181,-0.000058,0.0000905,-0.640956252,0.522024651,neg,ns,0.065075552,Lhfpl3,Lhfpl3_Exon,5,22746291,22746340,22746291,22746292,50,+,CGTGCTGTGGGCCATCTTCACCATCTGCTTTGCCATCGTCAACGTGGTGT,Promoter (<=1kb),5,22746059,23275597,529539,1,Lhfpl3-202,232,Lhfpl3-202,Lhfpl3,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,11,269629,ENSMUSG00000106379,conserved gene and region,5,22746271,22746758,488,*,488,33,0.610655738,0.733834587,0.067622951,9.76E-20,CpGisland,TRUE,U3,Pr-B
9369,cg05129162,-0.0000173,0.00000376,-4.606563263,0.00000599,loss,ns,0.000000194,0.00000638,0.030475122,0.975707744,pos,ns,-0.000662085,0.001869167,-0.35421373,0.723419527,neg,ns,0.140609773,-0.000095,0.0000643,-1.477377841,0.140589573,neg,ns,0.925172003,Gm13472,Gm13472_Intron,2,48433538,48433587,48433538,48433539,50,+,CGAGCCATTTGAATTATCTGCTCTAGTTCAAACACATGCTGTTGCCAATA,"Intron (Gm13481-201/Gm13481-201, intron 1 of 5)",2,48388037,48388350,314,1,Gm13472-201,45501,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,4,108168751,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2318,cg23477593,-0.0000179,0.00000788,-2.268474552,0.023987744,loss,ns,0.000000407,0.0000134,0.030371711,0.97579015,pos,ns,-0.012583871,0.003923694,-3.20714863,0.001480618,neg,ns,2.829556887,0.000622117,0.000134936,4.610475556,0.00000588,pos,ns,0.915968797,Meis1,Meis1_Exon,11,19014310,19014359,19014310,19014311,50,-,CGCCACCCCCGGCTCGCGGGGGGTACAAGTAGCTAATTCACATTTCTCAA,"Exon (Meis1-206/Meis1, exon 3 of 10)",11,18879817,19018985,139169,2,Meis1-206,4626,Meis1-206;Meis1-202;Meis1-209;Meis1-201;Meis1-203;Meis1-208;Meis1-207;Meis1-204;Meis1-205,Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,21,88,17268,ENSMUSG00000020160,mapped to different genes,11,19014258,19014327,70,*,70,9,0.628571429,1.448275862,0.128571429,3.78E-08,CpGisland,TRUE,NA,NRS
20164,cg07451598,-0.0000465,0.00000798,-5.821960362,1.45E-08,loss,yes,0.000000411,0.0000136,0.030322191,0.975829611,pos,ns,-0.007627917,0.00397404,-1.919436376,0.055846875,neg,ns,1.253001122,-0.0000961,0.000136667,-0.702815018,0.482698471,neg,ns,0.892437791,Gm49473,Gm49473_Intergenic_downstream,15,102777233,102777282,102777281,102777282,50,+,TAATTGCAATGAGGCCCTCTAGGCCGTGAATTAATGTGTCATAACTCACG,Distal Intergenic,15,102795121,102795371,251,2,Gm49473-201,18089,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,12,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5217,cg20337249,-0.000000635,0.00000208,-0.304894726,0.760650929,loss,ns,-0.000000107,0.00000354,-0.030298045,0.975848852,neg,ns,-0.000661348,0.001036014,-0.638358238,0.523711806,neg,ns,0.280907635,0.0000378,0.0000356,1.062099124,0.289017389,pos,ns,0.94475903,Depdc5,Depdc5_threeUTR,5,32893394,32893443,32893394,32893395,50,+,CGGCTATGGTTTACATATTTATTCAGATGAGCTGTGAAATGTGGGATTTT,3' UTR,5,32863706,32895934,32229,1,Depdc5-203,29688,Depdc5-203;Depdc5-201;Depdc5-202;Depdc5-204;Depdc5-211;Depdc5-216;Depdc5-217;Depdc5-205,Depdc5;Depdc5;Depdc5;Depdc5;Depdc5;Depdc5;Depdc5;Depdc5,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,7,277854,ENSMUSG00000037426,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19035,cg13944639,0.0000454,0.0000064,7.09431141,8.87E-12,gain,yes,-0.000000328,0.0000109,-0.030195266,0.975930754,neg,ns,0.003948412,0.003186476,1.239115814,0.216239941,pos,ns,0.665064085,0.0000162,0.000109583,0.147954255,0.882475058,pos,ns,0.055686435,Fgf5,Fgf5_Exon,5,98254696,98254745,98254696,98254697,50,-,CGGTTTCCATCTGCAGATCTACCCGGATGGCAAAGTCAATGGATCCCACG,Promoter (<=1kb),5,98254184,98277030,22847,1,Fgf5-201,512,Fgf5-201;Fgf5-202,Fgf5;Fgf5,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,14176,ENSMUSG00000029337,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
24965,cg08437267,-0.0000168,0.00000336,-4.989009667,0.00000101,loss,yes,-0.000000172,0.00000571,-0.030115368,0.975994423,neg,ns,-0.00118811,0.001673888,-0.709790677,0.478367497,neg,ns,0.320238337,-0.0000246,0.0000576,-0.428041937,0.66891781,neg,ns,0.958253777,Nop56,Nop56_Exon,2,130276814,130276863,130276862,130276863,50,+,ATGAGCCAAGTAGCCCCCAGCCTGTCAGCCCTAATTGGGGAAGCGGTGCG,"Exon (Nop56-202/Nop56, exon 7 of 12)",2,130274430,130279313,4884,1,Nop56-202,2384,Idh3b-201;Idh3b-204;Idh3b-205;Nop56-202;Nop56-212;Nop56-218;Nop56-204;Nop56-206;Nop56-205;Nop56-215;Nop56-210;Nop56-216;Nop56-219;Nop56-207;Nop56-217;Nop56-209;Nop56-213;Nop56-201;Nop56-211;Nop56-203;Nop56-214;Nop56-208,Idh3b;Idh3b;Idh3b;Nop56;Nop56;Nop56;Nop56;Nop56;Nop56;Nop56;Nop56;Nop56;Nop56;Nop56;Nop56;Nop56;Nop56;Nop56;Nop56;Nop56;Nop56;Nop56,0;0;0;0;0;0;0;2322;1983;1018;0;0;0;0;0;0;-226;-294;-355;-359;-452;-848,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,67134,ENSMUSG00000027405,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21276,cg20084865,-0.00000408,0.00000681,-0.599967462,0.548966218,loss,ns,-0.000000348,0.0000116,-0.030073911,0.976027459,neg,ns,0.002673007,0.003386941,0.789209991,0.430592464,pos,ns,0.365933575,-0.000114566,0.000116477,-0.983597891,0.326080296,neg,ns,0.914309253,Ssbp3,Ssbp3_Exon,4,107039985,107040034,107040033,107040034,50,+,CATCTACACAATGATTAATCCAGTGCCGCCTGGAGGCAGCCGGTCCAACG,"Exon (Ssbp3-201/Ssbp3, exon 14 of 18)",4,106911470,107049694,138225,1,Ssbp3-201,128515,Ssbp3-201;Ssbp3-215;Ssbp3-202;Ssbp3-203;Ssbp3-213;Ssbp3-211;Ssbp3-212;Ssbp3-204;Ssbp3-210;Ssbp3-208;Ssbp3-217,Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,18,72475,ENSMUSG00000061887,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2605,cg19446259,-0.00000695,0.00000363,-1.918385173,0.055980486,loss,ns,0.000000185,0.00000616,0.030070398,0.976030259,pos,ns,-0.001291732,0.001804378,-0.715887742,0.474599558,neg,ns,0.323672671,0.0000156,0.0000621,0.251206818,0.801820646,pos,ns,0.933858236,Cdk16,Cdk16_Exon,X,20694307,20694356,20694307,20694308,50,-,CGGCTGCCTGAGGGCTACCTGGAGAAGCTGACCCTCAATAGCCCCATCTT,"Exon (Cdk16-202/Cdk16, exon 4 of 16)",20,20687954,20699880,11927,1,Cdk16-202,6353,Cdk16-202;Cdk16-206;Cdk16-201;Cdk16-207;Cdk16-203;Cdk16-204;Cdk16-208;Cdk16-205,Cdk16;Cdk16;Cdk16;Cdk16;Cdk16;Cdk16;Cdk16;Cdk16,0;0;0;0;0;0;-2049;-2089,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,6,18555,ENSMUSG00000031065,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5336,cg23889185,-0.0000159,0.00000592,-2.682779379,0.007693009,loss,ns,0.000000301,0.0000101,0.029883636,0.976179086,pos,ns,-0.004473665,0.002947398,-1.517835269,0.130075051,neg,ns,0.885805995,-0.0000266,0.000101361,-0.262917269,0.792788997,neg,ns,0.880604589,Nkx1-1,Nkx1-1_Intergenic_upstream,5,33511916,33511965,33511916,33511917,50,-,CGGGGAATTGTTTTCAAACCTCCTCCAAATGGAACTTATTATTGGGTAAA,Distal Intergenic,5,33430734,33433976,3243,2,Nkx1-1-201,-77989,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,13,672284,ENSMUSG00000029112,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26048,cg02392100,0.000000675,0.0000044,0.153165074,0.87836775,gain,ns,-0.000000223,0.00000748,-0.029861462,0.976196756,neg,ns,0.000015,0.002192122,0.006861571,0.994529714,pos,ns,0.002382237,-0.000114406,0.0000754,-1.517587269,0.130137582,neg,ns,0.920509196,Etnk1,Etnk1_Intergenic_downstream,6,143414780,143414829,143414828,143414829,50,+,CTCACTTTTAAATACTATGCAGATGGCGCTGAACCCCAGCCAAACTGGCG,Distal Intergenic,6,143167254,143232307,65054,1,Etnk1-204,247526,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,10,75320,ENSMUSG00000030275,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13567,cg25412607,-0.0000648,0.0000118,-5.482868999,8.69E-08,loss,yes,0.0000006,0.0000201,0.029843207,0.976211303,pos,ns,-0.012936909,0.005885666,-2.198036683,0.028685534,neg,ns,1.542337058,0.000348152,0.000202408,1.720052961,0.086420812,pos,ns,0.566721734,Gm10172,Gm10172_Intron,7,71374104,71374153,71374104,71374105,50,+,CGATTTGTTATCAAATCAGGCATTGAGAAGCTGATTCATTGCTATTCAGC,"Intron (Gm29328-206/Gm29328-206, intron 2 of 3)",7,71332363,71332921,559,2,Gm10172-201,-41183,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,31,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14488,cg19261941,-0.0000239,0.00000528,-4.535698287,0.00000822,loss,ns,0.000000266,0.00000896,0.029703453,0.976322672,pos,ns,0.000890102,0.002625623,0.339005892,0.734834813,pos,ns,0.133810277,-0.000144671,0.0000903,-1.602199883,0.110129848,neg,ns,0.928759291,Ptprd,Ptprd_Exon,4,75956357,75956406,75956357,75956358,50,+,CGGATAGGCTGCAGGCATACCCTTGTGGATTCATATGGCATAATATTAAC,"Exon (Ptprd-206/Ptprd, exon 31 of 36)",4,75941238,76449980,508743,2,Ptprd-206,493574,Ptprd-206;Ptprd-204;Ptprd-213;Ptprd-220;Ptprd-203;Ptprd-217;Ptprd-218;Ptprd-219;Ptprd-201,Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd;Ptprd,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,13,32,19266,ENSMUSG00000028399,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5309,cg18014720,-0.0000117,0.00000396,-2.946810172,0.003454233,loss,ns,-0.0000002,0.00000673,-0.02969863,0.976326515,neg,ns,0.001712518,0.00197115,0.868791095,0.385633519,pos,ns,0.413825224,-0.000140151,0.0000678,-2.067499808,0.039516626,neg,ns,0.943427323,Ranbp17,Ranbp17_Intron,11,33393064,33393113,33393112,33393113,50,+,AGCCATCAGTCAATTAATCCATCATTTTCTCCAGACACTATTGTTTAACG,"Intron (Ranbp17-202/Ranbp17, intron 14 of 27)",11,33211795,33513746,301952,2,Ranbp17-202,120633,Anp32-ps-201;Ranbp17-202;Ranbp17-206;Ranbp17-203,Anp32-ps;Ranbp17;Ranbp17;Ranbp17,2153;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,31,66011,ENSMUSG00000040594,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26879,cg03073543,0.00000289,0.00000212,1.361586267,0.174317226,gain,ns,-0.000000107,0.00000361,-0.029616275,0.976392143,neg,ns,0.001048623,0.001057128,0.99195428,0.321993453,pos,ns,0.492152959,-0.0000554,0.0000364,-1.52321317,0.128724815,neg,ns,0.955641726,Prdm16,Prdm16_Intron,4,154421031,154421080,154421031,154421032,50,-,CGCTAGCAGCAATGAGCAAATTTGATAATTCGATCTCAAATTAGTTAATG,"Intron (Prdm16-201/Prdm16, intron 3 of 16)",4,154316125,154636866,320742,2,Prdm16-201,215786,Prdm16-201;Prdm16-202;Prdm16-203;Prdm16-204;Prdm16-205;Prdm16-206;Prdm16-210;Prdm16-207,Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,32,70673,ENSMUSG00000039410,conserved gene and region,4,154420922,154421062,141,*,141,12,0.531914894,1.20341394,0.085106383,1.22E-08,CpGisland,TRUE,U11,Tr-P
21829,cg26717771,0.0000133,0.00000411,3.224050632,0.001398628,gain,ns,-0.000000205,0.00000699,-0.029350543,0.976603903,neg,ns,-0.002383424,0.002047433,-1.164103735,0.245277104,neg,ns,0.610342989,0.000196901,0.0000704,2.796452489,0.005489394,pos,ns,0.853237687,Lmo1,Lmo1_Intron,7,109221232,109221281,109221232,109221233,50,+,CGTGCGGACAGATTTAATATCGTTTGTAAATATGATTAGTGGGCTGTCAT,"Intron (Gm45024-201/Gm45024-201, intron 1 of 2)",7,109138675,109175207,36533,2,Lmo1-202,-46025,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,66,109594,ENSMUSG00000036111,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18321,cg03085921,0.0000148,0.00000245,6.069529982,3.74E-09,gain,yes,-0.000000122,0.00000415,-0.029249612,0.976684334,neg,ns,0.001573585,0.001217173,1.292819205,0.197036287,pos,ns,0.705453786,-0.0000565,0.0000419,-1.349312767,0.178221161,neg,ns,0.079181554,Gm48316,Gm48316_Intergenic_upstream,13,94710249,94710298,94710297,94710298,50,+,CAGCCGCTCTCATTACAAACGCTGATTAAACTGCAAATTATCCAGCAGCG,Distal Intergenic,13,94752270,94752593,324,1,Gm48316-201,-41972,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,36,42,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
3932,cg05542681,0.000000932,0.000000778,1.198401772,0.231676001,gain,ns,-3.85E-08,0.00000132,-0.02912154,0.976786395,neg,ns,0.000488228,0.000387142,1.261107395,0.208218384,pos,ns,0.681480928,-0.0000181,0.0000133,-1.356663062,0.175875413,neg,ns,0.018898229,Fbxl16,Fbxl16_Exon,17,25819468,25819517,25819468,25819469,50,+,CGAGCTCTTCAAGTATTTCTCGCAGCACCTGCCCCGCTGCCTCGTCATTG,"Exon (Fbxl16-201/Fbxl16, exon 6 of 6)",17,25809085,25821255,12171,1,Fbxl16-201,10383,Fbxl16-201;Fbxl16-203;Fbxl16-202;Wdr24-201;Wdr24-203,Fbxl16;Fbxl16;Fbxl16;Wdr24;Wdr24,0;0;0;-4110;-4132,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,2,214931,ENSMUSG00000025738,conserved gene and region,17,25819468,25819651,184,*,184,18,0.673913044,0.884615385,0.097826087,7.25E-14,CpGisland,TRUE,U13,Hc-P
24052,cg21519702,0.00000631,0.00000134,4.699948412,0.00000392,gain,ns,6.64E-08,0.00000228,0.029119788,0.976787792,pos,ns,0.000776483,0.000667891,1.162589637,0.245890239,pos,ns,0.60925871,0.0000557,0.000023,2.425642306,0.015851951,pos,ns,0.03394757,Bcar3,Bcar3_Exon,3,122293612,122293661,122293612,122293613,50,-,CGCTCCCCACAGACCCAGAGCCGAATTTCTGAGGTATCCGGGCTCTGGTG,Promoter (<=1kb),3,122294136,122427148,133013,1,Bcar3-202,-524,Bcar3-202,Bcar3,-475,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,8,29815,ENSMUSG00000028121,mapped to different genes,3,122292926,122294040,1115,*,1115,150,0.722869955,1.030721351,0.134529148,3.20E-135,CpGisland,TRUE,U1,Pr-A
4699,cg00533774,-0.000000535,0.0000031,-0.172817502,0.862907657,loss,ns,-0.000000152,0.00000526,-0.028906937,0.976957414,neg,ns,0.000102139,0.00154108,0.066277591,0.947199547,pos,ns,0.023558518,0.0000391,0.000053,0.73718252,0.461568933,pos,ns,0.886682961,Sptbn1,Sptbn1_Exon,11,30159391,30159440,30159439,30159440,50,-,AGGTGGGAATTGACCCACTTGGTGAAGGTCTTCTTCTGCACGGCTTCACG,"Exon (Sptbn1-201/Sptbn1, exon 3 of 36)",11,30099395,30268169,168775,2,Sptbn1-201,108729,Sptbn1-201;Sptbn1-202;Sptbn1-203;Sptbn1-204,Sptbn1;Sptbn1;Sptbn1;Sptbn1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,20742,ENSMUSG00000020315,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5255,cg00046850,0.0000097,0.00000226,4.285174575,0.0000244,gain,ns,-0.000000111,0.00000385,-0.028825405,0.977022387,neg,ns,0.002194562,0.001126743,1.947705056,0.052352735,pos,ns,1.281060628,-0.0000701,0.0000387,-1.809763457,0.071300836,neg,ns,0.017593587,Tlx3,Tlx3_Exon,11,33201409,33201458,33201457,33201458,50,+,TGGAAGGCGTCGTGTTGCAGCTGCAGCATGAGCCGGCTCGCCTGCTGCCG,"Exon (Tlx3-201/Tlx3, exon 3 of 3)",11,33200752,33203589,2838,2,Tlx3-201,2131,Tlx3-201,Tlx3,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,20,27140,ENSMUSG00000040610,conserved gene and region,11,33201354,33201729,376,*,376,35,0.70212766,0.755323423,0.093085106,9.21E-26,CpGisland,TRUE,NA,NRS
13923,cg21863869,-0.00000088,0.00000368,-0.239382137,0.810967472,loss,ns,-0.00000018,0.00000624,-0.028804903,0.977038725,neg,ns,0.00000121,0.001829547,0.000663227,0.999471248,pos,ns,0.000229695,-0.000058,0.0000629,-0.921970913,0.35726072,neg,ns,0.921582091,Chd2,Chd2_Exon,7,73475372,73475421,73475372,73475373,50,-,CGGGCTTGTGCCTGCAAGTCATTCTGGGGGTTCCAGTCAGAGTCAAAGAT,"Exon (Chd2-203/Chd2, exon 21 of 39)",7,73426638,73541746,115109,2,Chd2-203,66325,Chd2-203;Chd2-213;Chd2-215;Chd2-209,Chd2;Chd2;Chd2;Chd2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,11,16,244059,ENSMUSG00000078671,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22567,cg17003896,0.00000319,0.00000746,0.427284302,0.669468894,gain,ns,0.000000364,0.0000127,0.028734269,0.977095014,pos,ns,0.001689715,0.003712045,0.455197849,0.649285545,pos,ns,0.187564266,0.0000905,0.000127657,0.708722405,0.479029367,pos,ns,0.803843361,Rpl19-ps10,Rpl19-ps10_Promoter,7,115170466,115170515,115170466,115170467,50,+,CGTGGAAGATGACGGTCTGATGGAAAATGACAGTAACAGCTTTGTTGATT,Promoter (1-2kb),7,115172056,115172385,330,1,Rpl19-ps10-201,-1541,Rpl19-ps10-201,Rpl19-ps10,-1541,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,29,668472,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19672,cg16030437,0.00000214,0.00000478,0.447224469,0.655025309,gain,ns,0.000000232,0.00000812,0.02859347,0.977207219,pos,ns,0.007232219,0.00237754,3.041891941,0.002551851,pos,ns,2.593144764,-0.000264641,0.0000818,-3.23666488,0.001340201,neg,ns,0.906937994,Lin54,Lin54_Exon,5,100485635,100485684,100485635,100485636,50,-,CGTGGAAATGGGCGTGGCTGTAGAGTCACCAGTAGAATTTATGTTGACAA,"Exon (Lin54-201/Lin54, exon 2 of 13)",5,100441918,100500592,58675,2,Lin54-208,14908,Lin54-208;Lin54-204;Lin54-210;Lin54-201;Lin54-202;Lin54-206;Lin54-205;Lin54-209;Lin54-203;Lin54-207,Lin54;Lin54;Lin54;Lin54;Lin54;Lin54;Lin54;Lin54;Lin54;Lin54,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,5,231506,ENSMUSG00000035310,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22669,cg24937065,-0.000013,0.00000725,-1.78745782,0.07484031,loss,ns,-0.000000351,0.0000123,-0.028502024,0.977280094,neg,ns,0.012922278,0.00360955,3.580025172,0.000398642,pos,ns,3.399417272,-0.000380827,0.000124132,-3.0679194,0.002345755,neg,ns,0.821967218,BC052040,BC052040_Intron,2,115657769,115657818,115657817,115657818,50,-,ATTAATAAACAAATTTGCTCAGGAGCTCATCAGTGTCAAGAGTAATAACG,"Intron (BC052040-203/BC052040, intron 5 of 10)",2,115581716,115778768,197053,1,BC052040-203,76053,BC052040-203;BC052040-201,BC052040;BC052040,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,37,49,399568,ENSMUSG00000040282,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2280,cg09792441,-0.0000425,0.0000116,-3.660800047,0.000295485,loss,ns,0.000000561,0.0000197,0.0284656,0.97730912,pos,ns,-0.004656289,0.005773192,-0.806536329,0.42055198,neg,ns,0.376180318,0.000122555,0.00019854,0.617281594,0.537502134,pos,ns,0.797593766,Gm30341,Gm30341_Intergenic_downstream,3,18933424,18933473,18933472,18933473,50,-,CTGCTTTACATGACAGTATTATCAAGGATTCATCAAGAGGCCATCTGTCG,Distal Intergenic,3,18753077,18753365,289,1,Gm30341-201,180396,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,23,102632201,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22728,cg11907193,-0.00000427,0.00000474,-0.901327449,0.368113956,loss,ns,0.000000229,0.00000805,0.028437619,0.977331419,pos,ns,0.004849795,0.002359344,2.055569059,0.040661396,pos,ns,1.39081771,-0.000241876,0.0000811,-2.981053293,0.0031001,neg,ns,0.855899231,Meis2,Meis2_threeUTR,2,115863300,115863349,115863348,115863349,50,-,CAATTGAGGTAAACACATAGAATATCTAACATGAAACAATTAATAGACCG,3' UTR,2,115863064,116065047,201984,2,Meis2-201,201698,Meis2-201;Meis2-203;Meis2-205;Meis2-206;Meis2-204;Meis2-202;Meis2-208;Meis2-219;Meis2-216;Meis2-218;Meis2-214;Meis2-207;Meis2-215,Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2,0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,97,17536,ENSMUSG00000027210,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21662,cg01449601,-0.0000302,0.00000703,-4.292424223,0.0000237,loss,ns,0.00000034,0.0000119,0.028421939,0.977343915,pos,ns,0.00692159,0.003500215,1.977475568,0.048873417,pos,ns,1.3109273,-0.000269246,0.000120372,-2.236781321,0.026011447,neg,ns,0.765721386,Zfhx3,Zfhx3_Exon,8,108793187,108793236,108793187,108793188,50,+,CGGAAAATTCTTAGCAATAAGAACATCTCCGCTATCATCCAAGGGATCGG,"Exon (Zfhx3-204/Zfhx3, exon 8 of 16)",8,107942644,108961630,1018987,1,Zfhx3-204,850543,Zfhx3-204;Zfhx3-202;Zfhx3-201,Zfhx3;Zfhx3;Zfhx3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,46,177,11906,ENSMUSG00000038872,conserved gene and region,8,108793130,108793217,88,*,88,8,0.522727273,1.333333333,0.090909091,0.00000452,CpGisland,TRUE,U10,Tr-S
26715,cg12617092,0.00000504,0.00000441,1.143714992,0.253624255,gain,ns,-0.000000212,0.00000749,-0.028322949,0.977422802,neg,ns,0.003341835,0.002193099,1.523795683,0.128579222,pos,ns,0.890829205,-0.000172443,0.0000754,-2.286421223,0.022903766,neg,ns,0.930324965,Edem3,Edem3_threeUTR,1,151821824,151821873,151821824,151821825,50,+,CGTATATTTTCTTATGATGTAATTTATGAAAAAGATGTCTGTACTAACAG,3' UTR,1,151755374,151822051,66678,1,Edem3-201,66450,Edem3-203;Edem3-201;Edem3-202;Edem3-204,Edem3;Edem3;Edem3;Edem3,66453;0;66364;66364,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,66967,ENSMUSG00000043019,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
18885,cg15157840,0.0000294,0.00000267,11.0387702,4.08E-24,gain,yes,0.000000128,0.00000453,0.028279828,0.977457166,pos,ns,0.001814438,0.001326522,1.367816026,0.172360392,pos,ns,0.763562528,0.000101807,0.0000456,2.231672745,0.026351157,pos,ns,0.083675298,Hdac7,Hdac7_fiveUTR,15,97831533,97831582,97831533,97831534,50,-,CGGCCGGGTAGGATGACAATGGAAGGAAATGCTTTATCTGAGTCTGAGAG,5' UTR,15,97792666,97844502,51837,2,Hdac7-203,12920,Hdac7-201;Hdac7-203;Hdac7-202;Hdac7-206;Hdac7-204;Hdac7-205;Hdac7-207;Hdac7-213;Hdac7-212,Hdac7;Hdac7;Hdac7;Hdac7;Hdac7;Hdac7;Hdac7;Hdac7;Hdac7,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,6,56233,ENSMUSG00000022475,conserved gene and region,15,97830905,97831538,634,*,634,75,0.791798107,0.760070333,0.11829653,4.59E-63,CpGisland,TRUE,NA,NRS
18780,cg20563498,0.0000086,0.0000037,2.321644683,0.020899999,gain,ns,-0.000000178,0.00000629,-0.028249968,0.977480962,neg,ns,-0.000518638,0.001843767,-0.281292564,0.778673677,neg,ns,0.108644506,0.0000199,0.0000634,0.314626341,0.753257028,pos,ns,0.936880656,Usp35,Usp35_Exon,7,97322075,97322124,97322075,97322076,50,+,CGATCAAGATGCTGAACTTCTTAACAGCAGCCAGGCCCTTCAGCAGTGCA,"Exon (Usp35-202/Usp35, exon 3 of 10)",7,97309380,97325964,16585,2,Usp35-202,3840,Usp35-202;Usp35-201;Usp35-205,Usp35;Usp35;Usp35,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,244144,ENSMUSG00000035713,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3393,cg18776764,-0.0000031,0.000000893,-3.473177909,0.000587501,loss,ns,-4.28E-08,0.00000152,-0.028238017,0.977490486,neg,ns,0.000418097,0.000444502,0.94059691,0.347643816,pos,ns,0.458865491,-0.0000295,0.0000153,-1.930345855,0.054475947,neg,ns,0.028358726,Bcl6,Bcl6_Promoter,16,23988929,23988978,23988929,23988930,50,+,CGCCTTCGCTGTAGCAAAGCTCGGCCTCTGGAATTCTGAGAACTAATTTG,Promoter (<=1kb),16,23965052,23988852,23801,2,Bcl6-201,-77,Bcl6-201;Gm37419-201,Bcl6;Gm37419,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,7,18,12053,ENSMUSG00000022508,conserved gene but different region,16,23988657,23989142,486,*,486,53,0.639917696,1.065348664,0.109053498,1.22E-42,CpGisland,TRUE,U1,Pr-A
22767,cg07821807,0.0000673,0.0000163,4.120987089,0.0000485,gain,ns,0.000000783,0.0000277,0.028212152,0.977511098,pos,ns,-0.010955462,0.008128588,-1.347769371,0.178716674,neg,ns,0.747834927,0.000588532,0.000279541,2.105347434,0.036065316,pos,ns,0.838121268,Dmbx1,Dmbx1_Intron,4,115932077,115932126,115932077,115932078,50,+,CGGATCTCCCGCCACAGGCGCCATATAGATGGCTTTAATTTTCCAAATCT,"Intron (Dmbx1-203/Dmbx1, intron 1 of 4)",4,115915119,115939926,24808,2,Dmbx1-203,7800,Dmbx1-203;Dmbx1-202,Dmbx1;Dmbx1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,42,140477,ENSMUSG00000028707,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
14066,cg07484877,-0.00002,0.00000436,-4.580785271,0.00000672,loss,ns,-0.000000209,0.0000074,-0.02819494,0.977524815,neg,ns,0.0000294,0.002169404,0.01353821,0.98920711,pos,ns,0.004712771,0.00000571,0.0000746,0.076532796,0.939044592,pos,ns,0.93278162,Ccdc92b,Ccdc92b_Exon,11,74630017,74630066,74630017,74630018,50,+,CGTGCAACGCCACATCAGCTTCCTGAAAAAGGAGCAGATGGCCCTGCTGC,"Exon (Ccdc92b-201/Ccdc92b, exon 2 of 4)",11,74619605,74641516,21912,1,Ccdc92b-201,10412,Ccdc92b-201,Ccdc92b,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,4,432582,ENSMUSG00000069814,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1811,cg22980045,-0.0000813,0.00000938,-8.668490953,2.48E-16,loss,yes,-0.000000448,0.0000159,-0.028113491,0.977589723,neg,ns,0.020677016,0.004670098,4.427533679,0.0000132,pos,ns,4.878592152,-0.000773489,0.000160604,-4.816116924,0.00000229,neg,ns,0.740253863,Foxp2,Foxp2_Intron,6,15396642,15396691,15396690,15396691,50,+,GACCTGTTTGTCACTGATCGTAACCTGACAGGCGCTAGCAGCCTGCAACG,"Intron (Foxp2-207/Foxp2, intron 9 of 18)",6,14901349,15441977,540629,1,Foxp2-207,495293,Foxp2-207;Foxp2-213;Foxp2-205;Foxp2-204;Foxp2-201;Foxp2-210;Foxp2-214;Foxp2-209;Foxp2-202;Foxp2-206,Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2;Foxp2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,38,65,114142,ENSMUSG00000029563,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18252,cg14877464,0.0000981,0.00000764,12.83847352,1.52E-30,gain,yes,-0.000000365,0.000013,-0.028097255,0.977602663,neg,ns,0.013169101,0.003803345,3.462504804,0.00061039,pos,ns,3.214392607,-0.000117796,0.000130797,-0.90060333,0.368498367,neg,ns,0.227107408,Ap3b1,Ap3b1_Intergenic_downstream,13,94596541,94596590,94596541,94596542,50,-,CGGAAGAGCGCTTCTCCAAATTGAAATATAGCAGAGTTTACACTCCTGAT,Distal Intergenic,13,94542303,94547867,5565,1,Ap3b1-202,54287,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,33,55,11774,ENSMUSG00000021686,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12028,cg14947554,0.00000291,0.00000117,2.491716049,0.013235155,gain,ns,-5.58E-08,0.00000199,-0.028088175,0.977609898,neg,ns,0.0000625,0.000582043,0.107318524,0.91460571,pos,ns,0.038766092,-0.0000275,0.00002,-1.371884769,0.171091298,neg,ns,0.963564777,Coro2b,Coro2b_Exon,9,62425787,62425836,62425835,62425836,50,+,TTACCTCATTCTCTGTCCTGGGTGGGACATTTTCTAATAAATCTATTCCG,"Exon (Coro2b-201/Coro2b, exon 11 of 12)",9,62419492,62537044,117553,2,Coro2b-201,111208,Coro2b-201;Coro2b-203;Coro2b-205;Coro2b-204;Coro2b-207,Coro2b;Coro2b;Coro2b;Coro2b;Coro2b,0;0;84662;3414;23312,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,235431,ENSMUSG00000041729,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19116,cg26538799,0.0000852,0.00000712,11.96284399,2.25E-27,gain,yes,-0.000000339,0.0000121,-0.028045517,0.977643894,neg,ns,0.007608893,0.003543356,2.147369122,0.032539081,pos,ns,1.487594717,0.000119515,0.000121856,0.980788104,0.327462051,pos,ns,0.187550075,Gm10320,Gm10320_Intergenic_upstream,13,98503751,98503800,98503751,98503752,50,-,CGCAGGCGATGGTAAGCTCTGTTTATATAATCCATTTCTTCACACGAGTT,Distal Intergenic,13,98489348,98492001,2654,2,Gm10320-201,-11799,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,7,101055909,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
466,cg14646676,-0.0000114,0.00000341,-3.343739299,0.000927968,loss,ns,-0.000000162,0.00000579,-0.028026966,0.977658678,neg,ns,-0.001565672,0.001697176,-0.922516114,0.356976854,neg,ns,0.447359943,-0.0000142,0.0000584,-0.243490762,0.807786289,neg,ns,0.936190245,Arhgap12,Arhgap12_Exon,18,6111845,6111894,6111845,6111846,50,+,CGTGTCCTATTCTGGCTGGAAACTTTAGGAGAATGTGAGTCATTGTTAAA,Promoter (<=1kb),18,6024427,6112363,87937,2,Arhgap12-205,469,Arhgap12-205;Arhgap12-202;Arhgap12-208;Arhgap12-212;Arhgap12-201;Arhgap12-211;Arhgap12-215;Arhgap12-214;Arhgap12-204;Arhgap12-203;Arhgap12-207,Arhgap12;Arhgap12;Arhgap12;Arhgap12;Arhgap12;Arhgap12;Arhgap12;Arhgap12;Arhgap12;Arhgap12;Arhgap12,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,75415,ENSMUSG00000041225,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
674,cg03695609,-0.0000099,0.00000551,-1.796138911,0.073446014,loss,ns,-0.000000262,0.00000936,-0.028023045,0.977661802,neg,ns,0.001214288,0.002742469,0.442771757,0.658239628,pos,ns,0.181615976,-0.000121027,0.0000943,-1.283240706,0.200366239,neg,ns,0.570798392,Gdnf,Gdnf_threeUTR,15,7835726,7835775,7835726,7835727,50,-,CGATGCAATGCATCTGTTTCAGATACAGAAATATAGAGAAGATATTTATT,3' UTR,15,7810846,7837575,26730,1,Gdnf-201,24880,Gdnf-201,Gdnf,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,3,14573,ENSMUSG00000022144,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24802,cg18938096,-0.00000596,0.00000257,-2.324531969,0.020742771,loss,ns,-0.000000122,0.00000436,-0.02789949,0.977760267,neg,ns,-0.002096172,0.001276711,-1.641853014,0.101634497,neg,ns,0.992958856,0.0000743,0.0000439,1.692295295,0.091594461,pos,ns,0.940825083,Gm43656,Gm43656_Intergenic_upstream,3,128512077,128512126,128512077,128512078,50,-,CGTAAGGCATTTGTTCATGGCGTGACAATGATTGGCCCTTGGCCACTTAA,Distal Intergenic,3,128280658,128281091,434,2,Gm43656-201,-231035,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,8,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24334,cg18875620,-0.0000247,0.00000538,-4.593635385,0.00000634,loss,ns,0.000000255,0.00000914,0.027899067,0.977760604,pos,ns,0.014800901,0.00267813,5.526579747,6.93E-08,pos,ns,7.159204861,-0.000500678,0.0000921,-5.436198826,0.00000011,neg,yes,0.123481439,Pou3f1,Pou3f1_Intergenic_downstream,4,124672439,124672488,124672439,124672440,50,+,CGTGGCGTTTGGCTGCGGTCCCACACCTTGCAGCTCATTATAAATATGCA,Distal Intergenic,4,124656807,124660655,3849,1,Pou3f1-201,15632,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,11,85,18991,ENSMUSG00000090125,mapped to different genes,4,124672392,124672501,110,*,110,9,0.609090909,0.906593407,0.081818182,0.00000205,CpGisland,TRUE,U13,Hc-P
20547,cg24879007,-0.000000388,0.000000327,-1.186922524,0.236166939,loss,ns,1.55E-08,0.000000556,0.027832052,0.977814011,pos,ns,0.000119347,0.00016276,0.733269731,0.46394807,pos,ns,0.333530628,-0.0000114,0.0000056,-2.042044041,0.041993182,neg,ns,0.00934881,Itga5,Itga5_fiveUTR,15,103366557,103366606,103366557,103366558,50,-,CGACCCGGAGCCGCTTCCTAAACCTCCCAGAGGCGAATGACTCAACGCGG,Promoter (<=1kb),15,103344286,103366748,22463,2,Itga5-202,142,Itga5-202;Itga5-201,Itga5;Itga5,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,2,16402,ENSMUSG00000000555,mapped to different genes,15,103366201,103366823,623,*,623,58,0.722311397,0.716944444,0.093097913,2.59E-42,CpGisland,TRUE,U1,Pr-A
20502,cg05584808,-0.0000116,0.00000818,-1.420306645,0.156523371,loss,ns,0.000000386,0.0000139,0.027756843,0.977873947,pos,ns,-0.010652585,0.004073189,-2.615293799,0.009351077,neg,ns,2.02913837,0.000384329,0.000140077,2.743705042,0.006428791,pos,ns,0.812650584,Smug1,Smug1_Intron,15,103135792,103135841,103135840,103135841,50,-,TAAATAATGGCACAGATCATTAAACCCCGAGAGCAGGCCCAGCCGCCCCG,"Intron (D930007P13Rik-201/D930007P13Rik-201, intron 3 of 6)",15,103153307,103158002,4696,2,Smug1-201,22210,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,12,71726,ENSMUSG00000036061,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
2394,cg26206341,0.0000084,0.00000167,5.021322968,0.000000868,gain,yes,7.86E-08,0.00000284,0.027670462,0.977942787,pos,ns,0.001280478,0.000832403,1.538291291,0.12499746,pos,ns,0.903098814,-0.00000613,0.0000286,-0.214176012,0.830550609,neg,ns,0.036353564,Tfap2b,Tfap2b_Exon,1,19234289,19234338,19234289,19234290,50,+,CGTCTGGGGAAGGCCCAGGTAGTAAAACTGGCGACAAGGAGGAGAAACAC,"Exon (Tfap2b-201/Tfap2b, exon 7 of 7)",1,19208914,19238576,29663,1,Tfap2b-201,25375,Tfap2b-201;Tfap2b-204;Tfap2b-202,Tfap2b;Tfap2b;Tfap2b,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,40,21419,ENSMUSG00000025927,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
13440,cg20718259,-0.000000977,0.00000151,-0.647840941,0.517567339,loss,ns,7.08E-08,0.00000256,0.027620064,0.977982951,pos,ns,0.000565576,0.000750657,0.753440728,0.451756954,pos,ns,0.345095153,-0.00000744,0.0000258,-0.288020448,0.773523551,neg,ns,0.971583515,Sltm,Sltm_threeUTR,9,70573769,70573818,70573769,70573770,50,+,CGAACCATAAAGATGGTAAGAAGGAAGACTGCGTGAAGGGTGACCCTGTC,3' UTR,9,70542754,70592234,49481,1,Sltm-206,31015,Sltm-206;Sltm-203;Sltm-201;Sltm-208;Sltm-204,Sltm;Sltm;Sltm;Sltm;Sltm,0;0;0;0;-1590,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,5,11,66660,ENSMUSG00000032212,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11426,cg04190606,-0.00000886,0.00000757,-1.1712623,0.242392836,loss,ns,0.000000355,0.0000129,0.027605039,0.977994925,pos,ns,-0.011335876,0.003766569,-3.00960239,0.002830626,neg,ns,2.548117558,0.000281285,0.000129532,2.171545208,0.030648047,pos,ns,0.091720582,Fgf9,Fgf9_Intron,14,58072577,58072626,58072625,58072626,50,+,AGTAAAAACAGCGCATGCCTTCCTGGAGTCAGGATCCGTAAATTCTGACG,"Intron (Fgf9-203/Fgf9, intron 1 of 2)",14,58070547,58112720,42174,1,Fgf9-203,2030,Fgf9-203;Fgf9-201;Fgf9-202;Fgf9-204,Fgf9;Fgf9;Fgf9;Fgf9,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,8,14180,ENSMUSG00000021974,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
1297,cg00929516,0.0000347,0.00000546,6.3537834,7.49E-10,gain,yes,0.000000255,0.00000927,0.027465454,0.978106166,pos,ns,0.002527467,0.002715134,0.930880933,0.352639511,pos,ns,0.452669029,-0.00000751,0.0000934,-0.080429513,0.935947554,neg,ns,0.100492649,Fezf2,Fezf2_Intergenic_downstream,14,12337818,12337867,12337866,12337867,50,+,TTTGGCTCTTTCTAGTGTGTCTCCTAAGCTCATTGTGCCAAGAACTAACG,Distal Intergenic,14,12342094,12345844,3751,2,Fezf2-203,7977,Fezf2-203;Fezf2-201,Fezf2;Fezf2,0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,21,45,54713,ENSMUSG00000021743,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
2403,cg08123457,-0.000000788,0.00000143,-0.549996653,0.582717711,loss,ns,6.68E-08,0.00000243,0.027458624,0.978111608,pos,ns,0.000278485,0.000713194,0.390475454,0.696453187,pos,ns,0.15710807,-0.0000209,0.0000245,-0.852461881,0.394615897,neg,ns,0.028213934,Fosb,Fosb_Intergenic_downstream,7,19301277,19301326,19301325,19301326,50,+,CTTCAAACCTGTAGCTGTCTAGCGACAGAGTGGTTCAATTCCACCTTTCG,Downstream (1-2kb),7,19304797,19309600,4804,2,Fosb-206,8274,Fosb-201;Fosb-202;Fosb-203;Fosb-205;Fosb-207;Fosb-206,Fosb;Fosb;Fosb;Fosb;Fosb;Fosb,0;0;0;0;0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,2,13,14282,ENSMUSG00000003545,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21206,cg02268005,-0.0000158,0.0000142,-1.113116662,0.266520702,loss,ns,0.00000066,0.000024,0.02742946,0.978134851,pos,ns,0.006631069,0.007045328,0.941200918,0.347334752,pos,ns,0.459251762,-0.000275932,0.000242288,-1.1388594,0.255641098,neg,ns,0.822091915,Rad54l2,Rad54l2_fiveUTR,9,106754042,106754091,106754042,106754043,50,-,CGGGTCCAGGTCTGGATCGCTCCCTGAGGCAGATTCGTCTGACATGGCTC,5' UTR,9,106688082,106789194,101113,2,Rad54l2-201,35103,Rad54l2-201,Rad54l2,0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,5,81000,ENSMUSG00000040661,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11668,cg18968947,-0.0000323,0.00000933,-3.459933928,0.000616027,loss,ns,0.000000434,0.0000159,0.027391221,0.978165325,pos,ns,-0.003950587,0.004645744,-0.850366907,0.395777436,neg,ns,0.40254897,-0.00022525,0.000159767,-1.409867134,0.159581397,neg,ns,0.74480649,Rab11fip2,Rab11fip2_Intergenic_downstream,19,59755604,59755653,59755652,59755653,50,-,TAACCAGTGTTATAAACAAATAATTGGCTATTATCCTCTCAAAGATCCCG,Distal Intergenic,19,59906916,59943000,36085,2,Rab11fip2-202,187396,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,3,74998,ENSMUSG00000040022,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4592,cg10543936,-0.00000288,0.00000205,-1.400622006,0.16232728,loss,ns,-9.56E-08,0.00000349,-0.027388007,0.978167886,neg,ns,-0.000207208,0.001022773,-0.202594214,0.839585111,neg,ns,0.075935271,0.00000392,0.0000352,0.11147257,0.911313755,pos,ns,0.936390631,Odf2,Odf2_Exon,2,29893498,29893547,29893546,29893547,50,-,CGGGTGAAAACCAAGGTACCTTGGATGCCCCCTGGAAAATCATCTGCCCG,"Exon (Odf2-212/Odf2, exon 4 of 5)",2,29889221,29901107,11887,1,Odf2-212,4277,Odf2-212;Odf2-219;Odf2-211;Odf2-208;Odf2-205;Odf2-204;Odf2-225;Odf2-213;Odf2-217;Odf2-206;Odf2-203;Odf2-224;Odf2-218;Odf2-202;Odf2-201;Odf2-220;Odf2-207;Odf2-210;Odf2-209;Odf2-215,Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2;Odf2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,8,18286,ENSMUSG00000026790,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
17160,cg24057624,-0.0000132,0.00000559,-2.362356961,0.018776722,loss,ns,0.000000259,0.0000095,0.027275008,0.97825794,pos,ns,0.00846639,0.002784216,3.040852866,0.002560414,pos,ns,2.591689851,-0.000437399,0.0000957,-4.568184071,0.00000711,neg,ns,0.903603356,Nrxn3,Nrxn3_Intron,12,88903712,88903761,88903760,88903761,50,-,AACATTGCAGGTGTTTTGTAATAATCTCCATTGTCTAATTAGAACATGCG,"Intron (Nrxn3-209/Nrxn3, intron 4 of 7)",12,88722876,89261571,538696,1,Nrxn3-209,180836,Nrxn3-209;Nrxn3-213;Nrxn3-208;Nrxn3-205,Nrxn3;Nrxn3;Nrxn3;Nrxn3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,13,39,18191,ENSMUSG00000066392,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6947,cg18808650,0.0000136,0.00000484,2.815272127,0.005185603,gain,ns,0.000000224,0.00000823,0.02723877,0.97828682,pos,ns,-0.002881195,0.002410039,-1.19549699,0.232806616,neg,ns,0.633004682,0.0000958,0.0000829,1.15556868,0.248747489,pos,ns,0.824256766,Map4k4,Map4k4_Exon,1,40000592,40000641,40000640,40000641,50,+,AACAAGAACAAGCATATCTCCTGTCTCTACAGCATGACCATAGGAGGCCG,"Exon (Map4k4-201/Map4k4, exon 15 of 31)",1,39900913,40026310,125398,1,Map4k4-201,99679,Map4k4-201;Map4k4-202;Map4k4-213;Map4k4-218;Map4k4-215;Map4k4-217;Map4k4-209;Map4k4-216;Map4k4-208;Map4k4-206;Map4k4-205,Map4k4;Map4k4;Map4k4;Map4k4;Map4k4;Map4k4;Map4k4;Map4k4;Map4k4;Map4k4;Map4k4,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,12,12,26921,ENSMUSG00000026074,conserved gene and region,1,40000626,40000692,67,*,67,7,0.731343284,0.797619048,0.104477612,0.00000982,CpGisland,TRUE,U10,Tr-S
7896,cg07440855,-0.00000248,0.00000299,-0.829950905,0.407205209,loss,ns,0.000000138,0.00000507,0.027212494,0.97830776,pos,ns,0.00145641,0.001486781,0.979572698,0.328060927,pos,ns,0.484045492,-0.0000526,0.0000511,-1.029197614,0.304189159,neg,ns,0.960956984,Pax5,Pax5_Intron,4,44623238,44623287,44623286,44623287,50,-,TATCAATAACAGATGAGGTTTAATCGTCCAACACAAAAATTATTTAGGCG,"Intron (Pax5-201/Pax5, intron 6 of 9)",4,44524757,44710487,185731,2,Pax5-201,87200,Pax5-201;Pax5-202;Pax5-203;Pax5-204;Pax5-205;Pax5-207;Pax5-206;Pax5-209;Pax5-210;Pax5-212;Pax5-213;Pax5-214;Pax5-215;Pax5-220;Pax5-211,Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,19,45,18507,ENSMUSG00000014030,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21376,cg14563628,-0.00000531,0.00000217,-2.448330001,0.014905963,loss,ns,9.92E-08,0.00000368,0.026938824,0.978525861,pos,ns,0.000359065,0.001079179,0.332720544,0.739570128,pos,ns,0.131020639,-0.0000331,0.0000371,-0.89065715,0.37380384,neg,ns,0.958528174,Apoo-ps,Apoo-ps_Intron,13,107540474,107540523,107540522,107540523,50,-,TGCACTTTCTACATTTCTGGCAAATGAGTATAATTATTTTCAGAGCTGCG,"Intron (Gm32004-204/Gm32004-204, intron 1 of 3)",13,107414144,107414729,586,2,Apoo-ps-201,-125794,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,5,621156,ENSMUSG00000049233,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13250,cg19168113,-0.0000177,0.00000455,-3.900217854,0.000117873,loss,ns,0.000000208,0.00000773,0.026904652,0.978553094,pos,ns,0.00343872,0.002263331,1.519318497,0.129701557,pos,ns,0.887054811,-0.000230291,0.0000778,-2.958680424,0.003327486,neg,ns,0.892901182,Gm11222,Gm11222_Promoter,4,69848020,69848069,69848020,69848021,50,-,CGGGAAAGAAATCTGGTGGGTTCAATTGCTGCTGATATGCATTTAAATGG,Promoter (5-6kb),4,69853947,69854684,738,1,Gm11222-201,-5927,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,1,433716,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13848,cg15343541,-0.0000125,0.0000101,-1.240631445,0.215680033,loss,ns,-0.000000459,0.0000171,-0.026857928,0.978590331,neg,ns,0.004167184,0.005003151,0.832911837,0.405535686,pos,ns,0.391970923,-0.000354137,0.000172058,-2.058241041,0.040402591,neg,ns,0.79310511,Ola1,Ola1_Exon,2,73099260,73099309,73099308,73099309,50,-,GGATATAGCTGATGAATAAGTATGAATCTTACCCTGATGGTCCATGCACG,"Exon (Ola1-201/Ola1, exon 9 of 11)",2,73092801,73214447,121647,2,Ola1-201,115138,Ola1-201;Ola1-206;Ola1-203,Ola1;Ola1;Ola1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,19,67059,ENSMUSG00000027108,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7436,cg20295992,0.0000152,0.00000197,7.689846822,1.97E-13,gain,yes,8.99E-08,0.00000335,0.026809341,0.978629053,pos,ns,0.001890405,0.000982329,1.924411289,0.055218167,pos,ns,1.257918011,-0.00000331,0.0000338,-0.097914065,0.922063809,neg,ns,0.054869817,Ostm1,Ostm1_Intron,10,42632631,42632680,42632631,42632632,50,-,CGGGGCCACTTTGACCGCCAATAGTGGGGAAGTCAGAGCTAATCCTCAGA,"Intron (Ostm1-202/Ostm1, intron 2 of 5)",10,42583835,42698323,114489,1,Ostm1-202,48796,Ostm1-202;Ostm1-203,Ostm1;Ostm1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,21,22,14628,ENSMUSG00000038280,conserved gene and region,10,42632523,42632647,125,*,125,9,0.528,1.057330827,0.072,0.00000584,CpGisland,TRUE,U3,Pr-B
19128,cg21166964,0.0000479,0.00000519,9.230321901,4.35E-18,gain,yes,-0.000000236,0.00000882,-0.026763573,0.978665527,neg,ns,0.006413275,0.002583235,2.482652517,0.013569766,pos,ns,1.867427642,-0.000102415,0.0000888,-1.152841413,0.249863645,neg,ns,0.121653046,Gm48049,Gm48049_Intergenic_downstream,13,98572768,98572817,98572768,98572769,50,-,CGGGCAGGCTCAAAAGAAAAAGAATAATTAGGGATAATTGCTTGTGTCCA,Distal Intergenic,13,98557761,98558031,271,1,Gm48049-201,15056,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,4,,NA,mapped to different genes,13,98572576,98572769,194,*,194,17,0.618556701,0.918407129,0.087628866,2.70E-12,CpGisland,TRUE,U3,Pr-B
14800,cg24048075,0.000126267,0.0000216,5.84566833,1.28E-08,gain,yes,-0.000000978,0.0000367,-0.026662611,0.97874599,neg,ns,0.041260102,0.010750565,3.837947198,0.000150376,pos,ns,3.822821244,-0.000999828,0.000369711,-2.70434921,0.007221867,neg,ns,0.489982944,Myo18a,Myo18a_Intron,11,77830742,77830791,77830742,77830743,50,+,CGATCTGTCCCCACGTCTTGATATGGAGTTGGTGTTTATTATTTCAAAAC,"Intron (Myo18a-208/Myo18a, intron 19 of 41)",11,77763246,77865980,102735,1,Myo18a-208,67496,Myo18a-208;Myo18a-209;Myo18a-207;Myo18a-201;Myo18a-203;Myo18a-222;Myo18a-223;Myo18a-211;Myo18a-205;Myo18a-210;Myo18a-224;Myo18a-202;Myo18a-220;Myo18a-221;Myo18a-218,Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a,0;0;0;0;0;0;0;0;0;0;0;0;0;0;6188,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,18,360013,ENSMUSG00000000631,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8632,cg11306047,-0.0000917,0.0000135,-6.777188807,6.18E-11,loss,yes,-0.000000613,0.000023,-0.0266602,0.978747912,neg,ns,-0.014599741,0.006734951,-2.167757436,0.030937907,neg,ns,1.509509064,0.000344752,0.000231614,1.488473513,0.137642606,pos,ns,0.830376271,Btrc,Btrc_Intron,19,45474798,45474847,45474846,45474847,50,-,CTGTACCAGCCATTGTCGGTAATTAAGATCTACAATTCACAATGCAGACG,"Intron (Btrc-204/Btrc, intron 1 of 2)",19,45363734,45507736,144003,1,Btrc-204,111064,Btrc-204;Btrc-201;Btrc-210;Btrc-202;Btrc-203;Btrc-209,Btrc;Btrc;Btrc;Btrc;Btrc;Btrc,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,63,98,12234,ENSMUSG00000025217,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1157,cg20419552,0.0000545,0.0000197,2.75761971,0.006167808,gain,ns,-0.000000893,0.0000335,-0.026612981,0.978785543,neg,ns,0.067925064,0.009828531,6.911008906,2.74E-11,pos,yes,10.56149328,-0.003091294,0.000338002,-9.145777146,8.07E-18,neg,yes,0.718749427,Tex29,Tex29_Intergenic_downstream,8,11912642,11912691,11912690,11912691,50,-,TAGCAGCGCAATAATTTTTTGTCAATGTTTTACTCTAAAAGCTTTCTACG,Distal Intergenic,8,11842061,11855757,13697,1,Tex29-202,70630,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,4,75528,ENSMUSG00000031512,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17622,cg13509896,0.000016,0.000006,2.661240232,0.008190924,gain,ns,0.000000267,0.0000102,0.026147686,0.979156366,pos,ns,0.0028406,0.002987454,0.950842977,0.342424815,pos,ns,0.46543477,0.0000266,0.000102738,0.258489233,0.796200894,pos,ns,0.877251503,Olig1,Olig1_Intron,16,91293036,91293085,91293036,91293037,50,-,CGTTTCTTACTATTAAGTGAGATTAAACGTAATGGCCTGATTTAATCACA,"Intron (Gm15966-209/Gm15966-209, intron 1 of 2)",16,91269772,91271933,2162,1,Olig1-201,23313,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,9,50914,ENSMUSG00000046160,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22885,cg24486434,-0.00000576,0.00000971,-0.592491208,0.553953627,loss,ns,0.000000431,0.0000165,0.026102249,0.979192578,pos,ns,-0.015291807,0.004835252,-3.162566502,0.00171871,neg,ns,2.764797311,0.000332273,0.000166284,1.998228634,0.046565088,pos,ns,0.124132861,Meis2,Meis2_fiveUTR,2,116065198,116065247,116065198,116065199,50,+,CGAGCGGCCCGTCAGCAGCCCACATGTAACCGAACTGTCGTGTTTCATGG,Promoter (<=1kb),2,115863064,116065839,202776,2,Meis2-205,592,Meis2-201;Meis2-203;Meis2-205;Meis2-206;Meis2-204;Meis2-202;Meis2-213;Meis2-210;Meis2-209,Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2,0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,11,97,17536,ENSMUSG00000027210,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
19246,cg08163578,-0.0000155,0.0000138,-1.12709387,0.260574452,loss,ns,-0.000000608,0.0000234,-0.025937422,0.97932394,neg,ns,0.000960183,0.006862764,0.139911947,0.88882042,pos,ns,0.051185977,-0.000241458,0.00023601,-1.023086231,0.307064779,neg,ns,0.745920963,Kmt2d,Kmt2d_Exon,15,98839603,98839652,98839603,98839604,50,+,CGGAAGACAGCAAAAGAGCTCAGCTCTTGCTCACAGGGCCCCTTGATCTT,"Exon (Kmt2d-202/Kmt2d, exon 49 of 55)",15,98831669,98871183,39515,2,Kmt2d-202,31531,Kmt2d-202;Kmt2d-201;Kmt2d-204,Kmt2d;Kmt2d;Kmt2d,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,16,381022,ENSMUSG00000048154,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26822,cg19782364,0.00000187,0.00000172,1.088872985,0.277055662,gain,ns,-7.49E-08,0.00000292,-0.025673538,0.979534249,neg,ns,0.000888751,0.000855209,1.039220192,0.299512204,pos,ns,0.523585477,-0.0000393,0.0000294,-1.336391623,0.182401361,neg,ns,0.040351544,Id1,Id1_Intergenic_downstream,2,152739425,152739474,152739473,152739474,50,+,CGAGGAATGCGGAGCTATTTAACCTGAGCATCCCCAGGTGTACGGAGGCG,Distal Intergenic,2,152736251,152737410,1160,1,Id1-202,3174,Id1-201;Id1-202,Id1;Id1,3174;3174,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,5,5,15901,ENSMUSG00000042745,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U6,En-Sp
26803,cg13406103,0.0000743,0.00000784,9.480889242,6.86E-19,gain,yes,-0.000000341,0.0000133,-0.02559308,0.979598372,neg,ns,0.013243363,0.003902342,3.39369644,0.000779165,pos,ns,3.108370359,-0.000302206,0.000134201,-2.251891154,0.025028848,neg,ns,0.556346073,Zcchc3,Zcchc3_Exon,2,152413751,152413800,152413751,152413752,50,+,CGCTCATGTGGGTCCGGGAACCACATTTAAAGCATGTCTTGGGCTGCCCC,"Exon (Zcchc3-201/Zcchc3, exon 1 of 1)",2,152411955,152415027,3073,2,Zcchc3-201,1227,6820408C15Rik-201;Zcchc3-201,6820408C15Rik;Zcchc3,-1787;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,67917,ENSMUSG00000074682,conserved gene and region,2,152413568,152414048,481,*,481,33,0.62993763,0.699867725,0.068607069,6.17E-20,CpGisland,TRUE,NA,NRS
24689,cg18253120,0.0000046,0.00000171,2.694653713,0.007430325,gain,ns,7.37E-08,0.0000029,0.025424337,0.979732857,pos,ns,0.002038581,0.000848729,2.401923934,0.016897264,pos,ns,1.772183621,-0.00004,0.0000292,-1.369126268,0.17195094,neg,ns,0.046112324,Neurog2,Neurog2_Promoter,3,127626083,127626132,127626083,127626084,50,-,CGACTCGAGCCACCCAGGCCATATGGTTCACTCTGTATTTTCTTAGTTGA,Promoter (7-8kb),3,127633135,127635631,2497,1,Neurog2-201,-7052,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,13,14,11924,ENSMUSG00000027967,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
5491,cg10520899,-0.0000005,0.00000227,-0.220065969,0.825964626,loss,ns,9.77E-08,0.00000386,0.025323416,0.97981329,pos,ns,0.001064889,0.001130483,0.941976823,0.346937987,pos,ns,0.459748145,-0.0000458,0.0000389,-1.176905061,0.240136258,neg,ns,0.95379787,Pbx3,Pbx3_Exon,2,34107663,34107712,34107711,34107712,50,-,AAAACCATTAAGTTAAAATATACAGTTATTGTACCTTTCTGGGCCGGGCG,"Exon (C230014O12Rik-201/C230014O12Rik-201, exon 1 of 4)",2,34172873,34288852,115980,2,Pbx3-210,181189,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,82,18516,ENSMUSG00000038718,conserved gene and region,2,34107707,34107835,129,*,129,11,0.519379845,1.351428571,0.085271318,5.89E-08,CpGisland,TRUE,U15,NS
18814,cg00935474,-0.0000469,0.00000736,-6.379621256,6.45E-10,loss,yes,0.000000315,0.0000125,0.025222437,0.979893769,pos,ns,-0.011989879,0.003661802,-3.274311455,0.001179009,neg,ns,2.928482811,0.000372577,0.000125929,2.95862406,0.003328078,pos,ns,0.879037347,E130114P18Rik,E130114P18Rik_Intron,4,97575621,97575670,97575669,97575670,50,-,TCACTGCACATCTTGGCTCAGCTAGAAATCGGAAACAGATGGTCCTTGCG,"Intron (E130114P18Rik-207/E130114P18Rik, intron 2 of 4)",4,97568133,97584596,16464,2,E130114P18Rik-207,8926,E130114P18Rik-207;E130114P18Rik-201;E130114P18Rik-203;E130114P18Rik-202;E130114P18Rik-206;E130114P18Rik-204;E130114P18Rik-209;E130114P18Rik-208,E130114P18Rik;E130114P18Rik;E130114P18Rik;E130114P18Rik;E130114P18Rik;E130114P18Rik;E130114P18Rik;E130114P18Rik,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,24,24,319865,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21106,cg24970974,0.0000741,0.00000888,8.341898156,2.43E-15,gain,yes,-0.00000038,0.0000151,-0.025212186,0.979901939,neg,ns,0.023691666,0.004418973,5.361351166,0.000000162,pos,ns,6.79138458,-0.000459383,0.000151968,-3.022891286,0.002712673,neg,ns,0.226677739,Barhl2,Barhl2_Exon,5,106466761,106466810,106466761,106466762,50,-,CGGTTATTACTGCGATTGGCTTAGGAACTGACAGGCAGTTTTAGGCGCAA,Promoter (8-9kb),5,106452523,106458166,5644,2,Barhl2-201,-8644,NA,NA,NA,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,27,104382,ENSMUSG00000034384,conserved gene but different region,5,106466605,106466844,240,*,240,13,0.5,0.933014354,0.054166667,0.000000544,CpGisland,TRUE,U13,Hc-P
12207,cg14972951,0.0000481,0.00000466,10.3050024,1.32E-21,gain,yes,-0.000000199,0.00000792,-0.025138572,0.979960608,neg,ns,0.0000969,0.002320972,0.041758421,0.966718163,pos,ns,0.014700122,0.00010928,0.0000798,1.369111047,0.171955692,pos,ns,0.901850275,Iqch,Iqch_Intron,9,63425288,63425337,63425336,63425337,50,-,AATACAGCATGAGGTATTTTCAGCCCTTGTATAGAAATTAACCAGAATCG,"Intron (Gm16759-204/Gm16759-204, intron 1 of 3)",9,63421455,63602493,181039,2,Iqch-201,177156,Iqch-201;Iqch-203;Iqch-204;Iqch-202;Iqch-206,Iqch;Iqch;Iqch;Iqch;Iqch,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,16,22,78250,ENSMUSG00000037801,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20352,cg09368251,0.0000572,0.00000696,8.215026756,5.82E-15,gain,yes,0.000000297,0.0000118,0.025073107,0.980012783,pos,ns,0.005240633,0.003464681,1.512587652,0.131403199,pos,ns,0.881394062,-0.000203744,0.00011915,-1.709974914,0.088271106,neg,ns,0.165592595,Hoxc5,Hoxc5_Exon,15,103009974,103010023,103010022,103010023,50,-,CCCCTGGATGCAGCGAATGAATTCGCACAGTGGTGAGTTTTACAGCTCCG,"Exon (Hoxc6-202/Hoxc6, exon 2 of 3)",15,102967443,103015676,48234,1,Hoxc5-202,42531,Hoxc5-202;Hoxc5-201;Hoxc6-202;Hoxc6-203;Hoxc6-201,Hoxc5;Hoxc5;Hoxc6;Hoxc6;Hoxc6,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,72,134,15424,ENSMUSG00000022485,mapped to different genes,15,103009987,103010218,232,*,232,17,0.556034483,0.969041769,0.073275862,5.22E-11,CpGisland,TRUE,U13,Hc-P
4782,cg12458345,-0.0000181,0.00000908,-1.996485917,0.046755315,loss,ns,-0.000000386,0.0000154,-0.025019969,0.980055133,neg,ns,-0.009787084,0.004520864,-2.164870461,0.031160419,neg,ns,1.506396705,0.00029844,0.000155472,1.919571984,0.055829659,pos,ns,0.822973454,Cpa2,Cpa2_Intron,6,30549920,30549969,30549968,30549969,50,-,GAGCAGAGGAAATCAATCCACATCAGATCATTCAAGCATGTGCAACCACG,"Intron (Cpa2-201/Cpa2, intron 6 of 10)",6,30541582,30564476,22895,1,Cpa2-201,8338,Cpa2-201;Cpa2-204;Cpa2-206;Cpa2-203;Cpa2-208;Cpa2-202;Cpa2-207,Cpa2;Cpa2;Cpa2;Cpa2;Cpa2;Cpa2;Cpa2,0;8250;6712;0;5435;3278;-1934,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,232680,ENSMUSG00000071553,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20840,cg02215945,-0.00000231,0.00000171,-1.348455347,0.178496312,loss,ns,7.29E-08,0.00000291,0.025012965,0.980060715,pos,ns,0.000821749,0.000853511,0.962786701,0.336404976,pos,ns,0.473137589,-0.0000289,0.0000294,-0.985206665,0.325290873,neg,ns,0.074990454,Ctcf,Ctcf_Exon,8,105637410,105637459,105637458,105637459,50,+,GACCCCAGAGCTGCCGAGAGCTCCCTCTGCAAGGCTGGCTGAGCTGCTCG,Promoter (<=1kb),8,105636568,105681647,45080,1,Ctcf-204,842,Agrp-202;Ctcf-204;Ctcf-201;Ctcf-202;Ctcf-203,Agrp;Ctcf;Ctcf;Ctcf;Ctcf,0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,8,13018,ENSMUSG00000005698,conserved gene and region,8,105635931,105637681,1751,*,1751,211,0.711593375,0.957586989,0.12050257,3.87E-178,CpGisland,TRUE,U1,Pr-A
12794,cg09663651,-0.0000252,0.00000561,-4.494507174,0.00000986,loss,ns,-0.000000238,0.00000953,-0.024924341,0.980131348,neg,ns,-0.001889545,0.002792977,-0.676534251,0.499205969,neg,ns,0.30172023,-0.00000333,0.0000961,-0.034662136,0.972371461,neg,ns,0.906275225,Tmem33,Tmem33_Intergenic_upstream,5,67205653,67205702,67205701,67205702,50,+,TTGCACAAATTTGCTTGGAATTCTCATATTTATTTGAGCATCCATTATCG,Distal Intergenic,5,67260565,67291461,30897,1,Tmem33-201,-54863,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,22,22,67878,ENSMUSG00000037720,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1298,cg16208700,0.0000114,0.00000679,1.679071655,0.094145669,gain,ns,0.000000287,0.0000115,0.02490392,0.980147623,pos,ns,0.004744081,0.003381575,1.402920372,0.161641322,pos,ns,0.791447606,-0.000167962,0.000116292,-1.444314763,0.149660377,neg,ns,0.181957764,Fezf2,Fezf2_Intergenic_downstream,14,12337832,12337881,12337880,12337881,50,+,GTGTGTCTCCTAAGCTCATTGTGCCAAGAACTAACGCTTTCTTTTACACG,Distal Intergenic,14,12342094,12345844,3751,2,Fezf2-203,7963,Fezf2-203;Fezf2-201,Fezf2;Fezf2,0;0,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,21,45,54713,ENSMUSG00000021743,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
8173,cg18452899,-0.0000268,0.00000625,-4.291848909,0.0000237,loss,ns,0.000000263,0.0000106,0.024783677,0.980243456,pos,ns,0.005582088,0.003110948,1.794336725,0.073733699,pos,ns,1.132333976,-0.000397278,0.000106985,-3.713395304,0.00024244,neg,ns,0.759938475,Pax2,Pax2_Intron,19,44820311,44820360,44820311,44820312,50,+,CGGCTGATCCATCTGGATCCAAGTGTGAGAAAAGTTCATTTCAGACCCAG,"Intron (Pax2-203/Pax2, intron 7 of 9)",19,44756045,44837851,81807,1,Pax2-203,64266,Pax2-203;Pax2-201;Pax2-202,Pax2;Pax2;Pax2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,35,166,18504,ENSMUSG00000004231,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22256,cg20521676,-0.0000303,0.00000686,-4.424479504,0.0000134,loss,ns,-0.000000285,0.0000116,-0.024452411,0.980507475,neg,ns,-0.00497762,0.003412629,-1.458588138,0.145690923,neg,ns,0.836567505,0.0001815,0.00011736,1.546526267,0.122997748,pos,ns,0.92487387,Parva,Parva_Exon,7,112572874,112572923,112572874,112572875,50,-,CGAGAAGGAATCCTCCAGTCTCGGCAAATCCAAGAGGAAATAACTGGTAA,"Exon (Parva-203/Parva, exon 8 of 14)",7,112427505,112589629,162125,1,Parva-203,145369,Parva-203;Parva-201;Parva-202;Parva-204,Parva;Parva;Parva;Parva,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,6,57342,ENSMUSG00000030770,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9332,cg12078478,-0.00000117,0.00000173,-0.67760724,0.498526153,loss,ns,0.000000072,0.00000295,0.024439555,0.980517721,pos,ns,0.000521409,0.000862954,0.604214451,0.546143002,pos,ns,0.262693627,-0.0000322,0.0000297,-1.085119482,0.278711873,neg,ns,0.964395818,Slit2,Slit2_Exon,5,48220026,48220075,48220026,48220027,50,-,CGCCTGGCAAACAAAAGAATTGGACAGATCAAAAGCAAGAAATTCCGTTG,"Exon (Slit2-208/Slit2, exon 14 of 36)",5,47983138,48307733,324596,1,Slit2-208,236888,Slit2-208;Slit2-201;Slit2-202;Slit2-216;Slit2-217;Slit2-209;Slit2-218;Slit2-206,Slit2;Slit2;Slit2;Slit2;Slit2;Slit2;Slit2;Slit2,0;0;0;0;0;37924;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,11,20563,ENSMUSG00000031558,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
90,cg22146484,-0.00000599,0.00000147,-4.063744159,0.0000613,loss,ns,6.09E-08,0.00000251,0.024295145,0.980632817,pos,ns,0.000529809,0.00073397,0.721839276,0.470937407,pos,ns,0.327036812,-0.000044,0.0000252,-1.744108342,0.082131383,neg,ns,0.074827384,Plag1,Plag1_fiveUTR,4,3938348,3938397,3938396,3938397,50,+,CAGCCATTGTAGTGTATGCGCTGCCCCTGCAGCCCAACTTGCAGCTGCCG,Promoter (<=1kb),4,3900996,3938382,37387,2,Plag1-201,0,Chchd7-202;Chchd7-206;Chchd7-213;Chchd7-207;Chchd7-208;Chchd7-201;Chchd7-205;Chchd7-214;Chchd7-203;Chchd7-209;Chchd7-210;Chchd7-211;Chchd7-204;Plag1-201;Plag1-202;Plag1-204;Plag1-203,Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Chchd7;Plag1;Plag1;Plag1;Plag1,-491;-491;-493;-517;-517;-517;-517;-517;-523;-646;-1025;-1103;-2457;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,22,56711,ENSMUSG00000003282,conserved gene but different region,4,3938107,3939194,1088,*,1088,119,0.706801471,0.896508745,0.109375,3.91E-95,CpGisland,TRUE,U1,Pr-A
22426,cg23591572,-0.00000239,0.00000406,-0.588989308,0.556297387,loss,ns,-0.000000168,0.00000691,-0.024288198,0.980638353,neg,ns,-0.000496082,0.002022971,-0.245224575,0.806444805,neg,ns,0.093425351,-0.00000979,0.0000696,-0.140770316,0.88814282,neg,ns,0.927411569,Mvk,Mvk_Intergenic_downstream,5,114475380,114475429,114475428,114475429,50,-,ACAGCTAGAAAATAGCTCCTAATTACATATTAGGTTCCTCGCGGCCCCCG,Distal Intergenic,5,114452420,114460572,8153,1,Mvk-207,23009,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,7,17855,ENSMUSG00000041939,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
20186,cg09499172,0.0000553,0.00000547,10.10246546,6.27E-21,gain,yes,-0.000000225,0.0000093,-0.024238301,0.980678122,neg,ns,0.009619232,0.002724089,3.531174393,0.000476537,pos,ns,3.321903144,-0.000134103,0.0000937,-1.431482036,0.153299493,neg,ns,0.086762892,Hoxc13,Hoxc13_Exon,15,102921834,102921883,102921882,102921883,50,+,CTCTCTCCAATGGCTGGGACAGTCAGGTGTACTGCTCCAAGGAGCAGTCG,Promoter (<=1kb),15,102921103,102928814,7712,1,Hoxc13-201,731,Hoxc13-201,Hoxc13,0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,15422,ENSMUSG00000001655,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
26041,cg20918588,-0.0000216,0.00000813,-2.659738527,0.008226696,loss,ns,0.000000334,0.0000138,0.024180074,0.980724529,pos,ns,-0.009133558,0.004048619,-2.255968677,0.024769282,neg,ns,1.606086586,0.000274406,0.000139232,1.970860606,0.049629179,pos,ns,0.795053892,Chrdl1,Chrdl1_Intron,X,143354252,143354301,143354300,143354301,50,-,CCTTTGAGAGTTTCATTTGTTTATCAGCAGAAATTCCTGGGCTAATTCCG,"Intron (Chrdl1-201/Chrdl1, intron 3 of 10)",20,143285674,143390099,104426,2,Chrdl1-201,35798,Chrdl1-201;Chrdl1-203;Chrdl1-202;Chrdl1-204;Chrdl1-205,Chrdl1;Chrdl1;Chrdl1;Chrdl1;Chrdl1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,83453,ENSMUSG00000031283,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23960,cg01741060,-0.00000245,0.00000279,-0.879911355,0.379588929,loss,ns,-0.000000114,0.00000474,-0.024166391,0.980735435,neg,ns,0.001496342,0.001387441,1.078490258,0.281653483,pos,ns,0.550284874,-0.0000923,0.0000477,-1.93358721,0.054074103,neg,ns,0.931593204,Naa25,Naa25_threeUTR,5,121417912,121417961,121417960,121417961,50,+,TCAATCTGATTTTAGCTCAGATGACTGGCAGTTCTATCTGACTTATTTCG,3' UTR,5,121397936,121442409,44474,1,Naa25-201,19976,Naa25-201;Naa25-205;Naa25-202;Naa25-203,Naa25;Naa25;Naa25;Naa25,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,1,3,231713,ENSMUSG00000042719,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23164,cg14589076,-0.00000267,0.00000238,-1.123676251,0.262019802,loss,ns,-9.76E-08,0.00000404,-0.024153222,0.980745931,neg,ns,-0.000417711,0.001183746,-0.352872049,0.724424177,neg,ns,0.140007064,0.0000367,0.0000407,0.902422304,0.36753321,pos,ns,0.954011855,Rnf220,Rnf220_Intron,4,117376269,117376318,117376269,117376270,50,-,CGATAATATTTGTTTTTTCTAATGAGTCTCTTGTGATCCATTCCAGGAGC,"Intron (Rnf220-201/Rnf220, intron 2 of 14)",4,117271463,117497052,225590,2,Rnf220-201,120734,Rnf220-201;Rnf220-202;Rnf220-207,Rnf220;Rnf220;Rnf220,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4438,cg10680513,0.0000817,0.00000699,11.69052523,2.11E-26,gain,yes,0.000000286,0.0000119,0.02412049,0.980772018,pos,ns,0.006778872,0.003479054,1.948481279,0.052259442,pos,ns,1.281835236,0.000088,0.000119644,0.735467669,0.462610789,pos,ns,0.155516865,Barhl1,Barhl1_fiveUTR,2,28915807,28915856,28915855,28915856,50,-,GGAGTTCAGCCTTGGGGGAGCCCGGGAGCTCTGGGCCAACCTCCTCTGCG,Promoter (<=1kb),2,28907679,28916412,8734,2,Barhl1-201,556,Barhl1-201;Barhl1-204;Barhl1-203;Barhl1-202;Barhl1-205,Barhl1;Barhl1;Barhl1;Barhl1;Barhl1,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,6,54422,ENSMUSG00000026805,conserved gene and region,2,28915735,28915915,181,*,181,15,0.701657459,0.673363095,0.082872928,1.54E-10,CpGisland,TRUE,U13,Hc-P
5872,cg05431747,-0.0000284,0.00000822,-3.452739259,0.00063206,loss,ns,0.000000337,0.000014,0.024110764,0.98077977,pos,ns,-0.007285309,0.004093197,-1.779857721,0.076078751,neg,ns,1.118736627,-0.0000231,0.000140765,-0.164270067,0.869625598,neg,ns,0.786105458,Gm7733,Gm7733_Intergenic_downstream,3,35105700,35105749,35105748,35105749,50,+,GCCTTTTGAGGGAGTTGTTAGAAGCAGGCTCACCCTGCAATGCAGAACCG,Distal Intergenic,3,35536882,35537800,919,2,Gm7733-201,432051,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,14,15,665655,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12806,cg08569430,0.0000742,0.00000665,11.15377544,1.63E-24,gain,yes,-0.000000271,0.0000113,-0.023993093,0.980873555,neg,ns,0.010161095,0.003310408,3.069438817,0.002334211,pos,ns,2.631859941,-0.00010648,0.000113845,-0.935312812,0.350355122,neg,ns,0.169546626,Tmem33,Tmem33_Intergenic_upstream,5,67223152,67223201,67223152,67223153,50,-,CGCTCTGGACCAGCTGCTCCTAAATACAGACAGGTCCTTGTCAATTAAGG,Distal Intergenic,5,67260565,67291461,30897,1,Tmem33-201,-37413,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,22,22,67878,ENSMUSG00000037720,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
26023,cg09452015,-0.00000378,0.0000115,-0.32763673,0.7434075,loss,ns,-0.000000461,0.0000196,-0.023528595,0.981243767,neg,ns,-0.0048798,0.005744965,-0.849404637,0.396311652,neg,ns,0.401963159,-0.000229363,0.000197569,-1.160927368,0.246564618,neg,ns,0.577868622,Gm2574,Gm2574_Intergenic_downstream,3,143169921,143169970,143169921,143169922,50,-,CGTGTATTTAAAGATTATGAGATTTTACAGTAGTTGGGTTATAAAATATC,Distal Intergenic,3,142962611,142963612,1002,1,Gm2574-201,207359,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,19,100040053,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19247,cg02140478,-0.00000105,0.00000168,-0.626627795,0.531364415,loss,ns,-6.68E-08,0.00000285,-0.023426196,0.981325381,neg,ns,-0.001066405,0.000834972,-1.277173698,0.202496673,neg,ns,0.693582108,0.00000984,0.0000287,0.342716407,0.732044084,pos,ns,0.964090504,Gm18148,Gm18148_Intergenic_upstream,14,98839737,98839786,98839785,98839786,50,+,AAAGAGACCCTGTTGTTGCACATTATTAATTGAGTTCACTAAAAGATGCG,Distal Intergenic,14,98922654,98923527,874,1,Gm18148-201,-82868,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,8,9,100416529,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26479,cg14880855,0.000005,0.00000445,1.124397046,0.261714508,gain,ns,0.000000177,0.00000755,0.023404854,0.981342391,pos,ns,0.003859918,0.00221302,1.744185897,0.082117839,pos,ns,1.085562486,-0.000271971,0.0000761,-3.573605253,0.000408149,neg,ns,0.092975274,Casz1,Casz1_Intergenic_upstream,4,148746077,148746126,148746077,148746078,50,-,CGACCTGTACTTGAACCCGACTGAAAGAGATAAAGCGGAATTTTCAATAG,Distal Intergenic,4,148804429,148954889,150461,1,Casz1-202,-58352,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,14,124,69743,ENSMUSG00000028977,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
9104,cg23939166,0.00000341,0.00000196,1.738883877,0.083047926,gain,ns,7.76E-08,0.00000333,0.023314625,0.981414305,pos,ns,0.001269,0.000975624,1.300705122,0.194325459,pos,ns,0.711470297,-0.0000149,0.0000336,-0.443786914,0.657506245,neg,ns,0.037200053,Samd4,Samd4_fiveUTR,14,46882909,46882958,46882957,46882958,50,-,AGCCCATGATGTAATGGTGTATGTTAATCAGTAGCATGTGGGGAGCTCCG,Promoter (<=1kb),14,46882854,47103150,220297,1,Samd4-201,55,Samd4-201;Samd4-211;Samd4-202;Samd4-208;Samd4-206,Samd4;Samd4;Samd4;Samd4;Samd4,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,5,16,74480,ENSMUSG00000021838,conserved gene but different region,14,46882957,46883237,281,*,281,36,0.747330961,0.927732942,0.128113879,6.19E-32,CpGisland,TRUE,U3,Pr-B
6610,cg24139732,0.0000379,0.00001,3.773563164,0.000192793,gain,ns,-0.000000397,0.000017,-0.023298504,0.981427155,neg,ns,-0.001517206,0.004994137,-0.303797481,0.76148599,neg,ns,0.118338083,0.0000222,0.000171748,0.129327477,0.8971824,pos,ns,0.149289521,Msx1,Msx1_Promoter,5,37828066,37828115,37828066,37828067,50,-,CGGCAATTAGCGAGCCCCAAACAGTCCTCTTTAATAGAATGAATGTGCTA,Promoter (3-4kb),5,37820485,37824583,4099,2,Msx1-201,-3532,Msx1-201;Msx1-202,Msx1;Msx1,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,8,14,17701,ENSMUSG00000048450,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
14573,cg05359706,-0.0000269,0.0000123,-2.188311804,0.029392952,loss,ns,-0.000000484,0.0000209,-0.023163044,0.98153512,neg,ns,-0.008255508,0.006127651,-1.347255027,0.178882034,neg,ns,0.747433275,0.0000235,0.000210729,0.111298878,0.911451371,pos,ns,0.727202994,Osbpl6,Osbpl6_Exon,2,76548319,76548368,76548319,76548320,50,-,CGTTTTTTTGTCCTGGATAATGGAATGTTAAAGTATTCAAAGGCACCACT,Promoter (<=1kb),2,76548340,76596045,47706,1,Osbpl6-208,0,Osbpl6-201;Osbpl6-202;Osbpl6-203;Osbpl6-208,Osbpl6;Osbpl6;Osbpl6;Osbpl6,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,99031,ENSMUSG00000042359,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26878,cg10068143,-0.00000116,0.00000159,-0.730550996,0.465605204,loss,ns,-6.26E-08,0.00000271,-0.023150245,0.981545321,neg,ns,-0.000922639,0.000792746,-1.163852131,0.245378917,neg,ns,0.610162755,0.0000302,0.0000273,1.107403768,0.268977914,pos,ns,0.984747633,Cacna1e,Cacna1e_Exon,1,154417986,154418035,154418034,154418035,50,-,GCCCAGAGGAGGCGAGATCACCCGCACTAATTTGTACATATCCTTATACG,"Exon (Cacna1e-208/Cacna1e, exon 2 of 3)",1,154390731,154726356,335626,2,Cacna1e-203,308321,Cacna1e-203;Cacna1e-201;Cacna1e-207;Cacna1e-208,Cacna1e;Cacna1e;Cacna1e;Cacna1e,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,19,12290,ENSMUSG00000004110,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17025,cg06642440,-0.00000378,0.00000173,-2.186302495,0.029540981,loss,ns,6.79E-08,0.00000294,0.023121295,0.981568394,pos,ns,0.002164405,0.000860587,2.515032963,0.012407783,pos,ns,1.906305828,-0.0000682,0.0000296,-2.303975047,0.02188513,neg,ns,0.950682483,Dynll2,Dynll2_Exon,11,87981524,87981573,87981524,87981525,50,-,CGGCCCACGATACAATGCCAGGTAGGGTTATATTTCTTGTCAAATTCCTA,"Exon (Dynll2-204/Dynll2, exon 2 of 2)",11,87979525,87984012,4488,2,Dynll2-204,2439,Dynll2-204;Dynll2-202;Dynll2-201;Dynll2-203,Dynll2;Dynll2;Dynll2;Dynll2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,5,68097,ENSMUSG00000020483,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16381,cg16365057,0.0000605,0.0000155,3.893054234,0.000121241,gain,ns,-0.00000061,0.0000264,-0.023093621,0.981590452,neg,ns,0.022621621,0.007739287,2.922959478,0.003722348,pos,ns,2.429183063,-0.000535943,0.000266153,-2.013661655,0.04490888,neg,ns,0.319199325,Nfix,Nfix_Intron,8,84789040,84789089,84789040,84789041,50,+,CGAAAAACAAGTTTCCACAGGGCCGCCTTGGGTTGAGGCCAGGCCGTCCT,"Intron (Nfix-201/Nfix, intron 1 of 8)",8,84708614,84800140,91527,2,Nfix-201,11051,Nfix-201;Nfix-202;Nfix-205,Nfix;Nfix;Nfix,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,49,18032,ENSMUSG00000001911,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4784,cg07591994,-0.00000198,0.00000169,-1.175675592,0.240626659,loss,ns,-6.55E-08,0.00000287,-0.022831667,0.981799237,neg,ns,0.000121178,0.000840327,0.144202993,0.885433877,pos,ns,0.052843866,-0.000034,0.0000289,-1.175656679,0.240634208,neg,ns,0.966591976,Prkg1,Prkg1_threeUTR,19,30569077,30569126,30569077,30569078,50,-,CGGTAAGTCCTAATGCCACTGTAGTTACTGGAGCAGCATCGATCAAAGGC,3' UTR,19,30564489,31765033,1200545,2,Prkg1-201,1195907,Prkg1-201;Prkg1-208;Prkg1-202;Prkg1-207;Prkg1-204,Prkg1;Prkg1;Prkg1;Prkg1;Prkg1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,4,13,19091,ENSMUSG00000052920,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26679,cg18105886,-0.0000036,0.00000532,-0.677161399,0.498808565,loss,ns,-0.000000205,0.00000903,-0.022672105,0.981926414,neg,ns,0.009302848,0.002646375,3.515316928,0.000504748,pos,ns,3.296925632,-0.000367971,0.000091,-4.043254551,0.0000666,neg,ns,0.849979735,N4bp2l1,N4bp2l1_threeUTR,5,150574030,150574079,150574030,150574031,50,+,CGAGTGTCAGGTTCTCGGAATATAACTTCATAGTTATTTTCAAGTGCCTG,3' UTR,5,150571644,150594525,22882,2,N4bp2l1-201,20446,Brca2-201;Brca2-210;Brca2-206;Brca2-205;Brca2-204;N4bp2l1-201;N4bp2l1-205;N4bp2l1-206;N4bp2l1-207,Brca2;Brca2;Brca2;Brca2;Brca2;N4bp2l1;N4bp2l1;N4bp2l1;N4bp2l1,51400;51386;7489;7208;5442;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,2,100637,ENSMUSG00000041132,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
21501,cg26091579,0.0000414,0.00000486,8.514443892,7.33E-16,gain,yes,-0.000000186,0.00000826,-0.022584711,0.98199607,neg,ns,0.002501991,0.002418659,1.034453579,0.301730461,pos,ns,0.520380843,0.0000711,0.0000832,0.855058552,0.393179077,pos,ns,0.063643388,Bcl11b,Bcl11b_Promoter,12,108004072,108004121,108004120,108004121,50,-,GCTGCCTCTGTACAATGGGATAAAATTCAAGTTCAAGTGCGGACGTGACG,Promoter (<=1kb),12,107910403,108003602,93200,2,Bcl11b-201,-519,Bcl11b-201;Bcl11b-202;Bcl11b-203,Bcl11b;Bcl11b;Bcl11b,0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,8,39,58208,ENSMUSG00000048251,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
9248,cg19781191,0.0000323,0.00000719,4.488039818,0.0000102,gain,ns,0.000000276,0.0000122,0.022577501,0.982001816,pos,ns,0.005773482,0.003580576,1.612445092,0.107882659,pos,ns,0.967048356,-0.0000411,0.000123136,-0.333515342,0.738970783,neg,ns,0.904445581,Cadm1,Cadm1_Intron,9,47846822,47846871,47846822,47846823,50,-,CGGATCTGTACACTTGATCGATAAACTTCAAATATTATTAGAGGTAGAGG,"Intron (Cadm1-204/Cadm1, intron 8 of 9)",9,47530173,47853385,323213,1,Cadm1-204,316649,Cadm1-204;Cadm1-209;Cadm1-206;Cadm1-202;Cadm1-203;Cadm1-201,Cadm1;Cadm1;Cadm1;Cadm1;Cadm1;Cadm1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,39,77,54725,ENSMUSG00000032076,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13931,cg06794263,-0.0000113,0.00000342,-3.287726778,0.001126058,loss,ns,0.000000131,0.00000582,0.022539501,0.982032104,pos,ns,0.001459101,0.001703804,0.856378229,0.392450079,pos,ns,0.406215579,-0.0000852,0.0000586,-1.454356461,0.146859221,neg,ns,0.048000221,Chd2,Chd2_Exon,7,73538017,73538066,73538065,73538066,50,+,TGCTGTTTGGCGAGTACACAGTGCAATGCAGTATGTCTGTCAGCGCTGCG,"Exon (Gm44686-201/Gm44686-201, exon 1 of 4)",7,73426638,73541746,115109,2,Chd2-203,3680,Chd2-203;Chd2-201;Chd2-204;Chd2-207;Chd2-208;Chd2-216;Chd2-214,Chd2;Chd2;Chd2;Chd2;Chd2;Chd2;Chd2,0;0;-396;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,11,16,244059,ENSMUSG00000078671,conserved gene but different region,7,73537674,73538066,393,*,393,37,0.638676845,0.941530692,0.094147583,2.15E-27,CpGisland,TRUE,U1,Pr-A
24352,cg17553901,-0.0000224,0.00000648,-3.457367104,0.000621703,loss,ns,0.000000248,0.000011,0.022522183,0.982045907,pos,ns,-0.004428452,0.003224518,-1.37336872,0.170630189,neg,ns,0.767944128,-0.0000893,0.000110891,-0.804916126,0.421484979,neg,ns,0.802290162,Usp5,Usp5_Exon,6,124818520,124818569,124818520,124818521,50,+,CGTTGCCATAGAAACCAAGGCTACCTTTGGGCTCATCCGGAGTGACCAGG,"Exon (Usp5-201/Usp5, exon 15 of 20)",6,124815019,124829484,14466,2,Usp5-201,10915,Tpi1-205;Tpi1-204;Tpi1-207;Tpi1-206;Usp5-201;Usp5-202;Usp5-204;Usp5-209;Usp5-203;Usp5-206;Usp5-205;Usp5-207,Tpi1;Tpi1;Tpi1;Tpi1;Usp5;Usp5;Usp5;Usp5;Usp5;Usp5;Usp5;Usp5,-4224;-4362;-4224;-4366;0;0;0;-627;4900;10839;5054;5631,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,22225,ENSMUSG00000038429,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
4226,cg21156605,-0.0000151,0.00000819,-1.844304005,0.066092856,loss,ns,0.000000313,0.0000139,0.02251208,0.982053959,pos,ns,0.003722772,0.004075898,0.913362388,0.361761781,pos,ns,0.441577317,-0.000248218,0.00014017,-1.770835378,0.077570703,neg,ns,0.805160043,Trio,Trio_threeUTR,15,27742433,27742482,27742481,27742482,50,+,CCTTCCCTTTTGCCGTCTTTATCTTTTTTCTCAGATTTTTTCCTTAAACG,3' UTR,15,27730651,28025848,295198,2,Trio-201,283366,Trio-212;Trio-201;Trio-208;Trio-206;Trio-214;Trio-211;Trio-205,Trio;Trio;Trio;Trio;Trio;Trio;Trio,-110;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,8,11,223435,ENSMUSG00000022263,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
8618,cg06581136,0.000033,0.00000884,3.733532099,0.000224617,gain,ns,0.000000337,0.000015,0.02246453,0.982091859,pos,ns,0.01343114,0.004401394,3.051565023,0.002473387,pos,ns,2.606707976,-0.000412801,0.000151364,-2.727213731,0.006751002,neg,ns,0.533450214,Dscaml1,Dscaml1_Exon,9,45450489,45450538,45450537,45450538,50,+,GGAACCCTACACCGTCCGGGTGGAGGATCAAAGGTCAATGCGTGGCAACG,"Exon (Dscaml1-208/Dscaml1, exon 5 of 6)",9,45426628,45571224,144597,1,Dscaml1-208,23861,Dscaml1-208;Dscaml1-209;Dscaml1-202;Dscaml1-206;Dscaml1-211;Dscaml1-201;Dscaml1-210,Dscaml1;Dscaml1;Dscaml1;Dscaml1;Dscaml1;Dscaml1;Dscaml1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,32,114873,ENSMUSG00000032087,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
14784,cg17890364,0.0000551,0.0000158,3.487193984,0.000558662,gain,ns,-0.000000603,0.0000269,-0.022454911,0.982099525,neg,ns,-0.004979683,0.007867501,-0.632943388,0.527237231,neg,ns,0.277993929,0.000620295,0.000270563,2.292610528,0.022539977,pos,ns,0.475992971,Gm11146,Gm11146_Intron,16,77644699,77644748,77644747,77644748,50,+,TTTCCATCTTTGGAGCATCAGATGTATTCCCTAAGGAGGATGGGTCTCCG,"Intron (Mir99ahg-211/Mir99ahg-211, intron 5 of 6)",16,77588578,77602094,13517,2,Gm11146-201,-42605,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,21,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11481,cg02632460,-0.00000627,0.00000187,-3.3480176,0.000914256,loss,ns,-6.95E-08,0.00000318,-0.021834181,0.982594275,neg,ns,0.000331828,0.000932455,0.355864615,0.722184001,pos,ns,0.141352137,-0.0000254,0.0000321,-0.793215779,0.428258798,neg,ns,0.953170396,Acvr1,Acvr1_Exon,2,58468509,58468558,58468557,58468558,50,-,CTTACCTAAGATATTTTCATGCCTCAGCATCACAGTGTTGTACAATTCCG,"Exon (Acvr1-206/Acvr1, exon 6 of 11)",2,58388644,58516272,127629,2,Acvr1-206,47714,Acvr1-206;Acvr1-203;Acvr1-202;Acvr1-204;Acvr1-201,Acvr1;Acvr1;Acvr1;Acvr1;Acvr1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,11477,ENSMUSG00000026836,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13268,cg02612181,-0.00000657,0.00000234,-2.81119641,0.005250068,loss,ns,8.65E-08,0.00000397,0.021781703,0.982636103,pos,ns,0.0000933,0.001163556,0.080168813,0.936154723,pos,ns,0.028652367,-0.0000972,0.00004,-2.427933383,0.015754071,neg,ns,0.960206126,Ank3,Ank3_Exon,10,69956044,69956093,69956044,69956045,50,+,CGTTTGGTAAAGAGACATAAACTGGCCAACCCACCCCCCATGGTGGAAGG,"Exon (Ank3-247/Ank3, exon 28 of 43)",10,69398996,70023957,624962,1,Ank3-247,557048,Ank3-247;Ank3-231;Ank3-210;Ank3-239;Ank3-240;Ank3-220;Ank3-201;Ank3-202;Ank3-203;Ank3-204;Ank3-206;Ank3-233;Ank3-221;Ank3-232;Ank3-226;Ank3-214;Ank3-228;Ank3-205;Ank3-215;Ank3-237;Ank3-242;Ank3-208;Ank3-227;Ank3-207;Ank3-230;Ank3-219,Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3;Ank3,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,13,11735,ENSMUSG00000069601,conserved gene but different region,10,69955895,69956045,151,*,151,14,0.622516556,0.967948718,0.092715232,1.56E-10,CpGisland,TRUE,NA,NRS
14265,cg17299060,4.89E-08,0.00000152,0.032075413,0.974432552,gain,ns,-5.62E-08,0.00000259,-0.021732533,0.982675294,neg,ns,0.004027632,0.000758049,5.31315599,0.000000206,pos,ns,6.685716566,-0.0000843,0.0000261,-3.233322952,0.001355456,neg,ns,0.962299422,Chic2,Chic2_Intron,5,75012972,75013021,75013020,75013021,50,+,TTGCCATCTGAATGCTGAAGGCTGTAGGGAAATCGATTTGATTCTAATCG,"Intron (Chic2-201/Chic2, intron 3 of 5)",5,74997988,75044774,46787,2,Chic2-201,31753,Chic2-201;Chic2-202,Chic2;Chic2,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,10,74277,ENSMUSG00000029229,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3067,cg12464059,0.00000146,0.0000024,0.60750777,0.543958733,gain,ns,8.84E-08,0.00000407,0.021720446,0.982684928,pos,ns,-0.000685941,0.001192377,-0.575271947,0.565524696,neg,ns,0.247548425,0.0000794,0.000041,1.936080251,0.053766724,pos,ns,0.93911087,Lrmda,Lrmda_Intron,14,22505895,22505944,22505895,22505896,50,+,CGGGGATGATTGTGGTGATGAATTGTGTTAATCTGCACAGTATGAAGCCA,"Intron (Lrmda-201/Lrmda, intron 2 of 6)",14,22019712,23056085,1036374,1,Lrmda-201,486183,Lrmda-201;Lrmda-204;Lrmda-203;Lrmda-206;Lrmda-202,Lrmda;Lrmda;Lrmda;Lrmda;Lrmda,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,157,157,76633,ENSMUSG00000063458,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25176,cg20954053,-0.0000158,0.00000758,-2.077561654,0.038572658,loss,ns,-0.000000279,0.0000129,-0.021689873,0.982709296,neg,ns,0.001342459,0.003774635,0.355652577,0.722342649,pos,ns,0.141256742,0.000120071,0.000129809,0.924977173,0.355697249,pos,ns,0.765314661,Gm14094,Gm14094_Intergenic_downstream,2,133346712,133346761,133346712,133346713,50,-,CGTTTGTTGTAAAATGTGGTTTAACAGCTTGTTAGCACATTTATTTTTTT,Distal Intergenic,2,133199611,133200220,610,1,Gm14094-201,147150,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,1,100043785,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16881,cg24574794,-0.00000479,0.00000156,-3.07860159,0.002265692,loss,ns,5.69E-08,0.00000265,0.021511818,0.982851216,pos,ns,-0.000317836,0.00077499,-0.410116094,0.682004067,neg,ns,0.166213036,-0.0000423,0.0000267,-1.586418834,0.113663796,neg,ns,0.03784631,Irf2bpl,Irf2bpl_Promoter,12,86894597,86894646,86894597,86894598,50,-,CGTTCAAAGTGCTCTTTCATTTGAAATGCTGGAAGCCTGCCATGTGCAAT,Promoter (9-10kb),12,86880701,86884798,4098,2,Irf2bpl-201,-9848,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,5,6,238330,ENSMUSG00000034168,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5130,cg19098934,-0.000043,0.00000614,-7.003689796,1.55E-11,loss,yes,-0.000000224,0.0000104,-0.021504497,0.982857051,neg,ns,-0.005612589,0.003057641,-1.835594447,0.067375431,neg,ns,1.171498445,0.000186992,0.000105152,1.778297075,0.076335127,pos,ns,0.93973991,Bach2,Bach2_Intron,4,32425868,32425917,32425868,32425869,50,-,CGGTTAGAATAAGATTTTCCATTTATTGCCCTTTGTGCATGGCTAAAAAT,"Intron (Bach2-202/Bach2, intron 3 of 6)",4,32238804,32586104,347301,1,Bach2-202,187064,Bach2-202;Bach2-201;Bach2-205;Bach2-207,Bach2;Bach2;Bach2;Bach2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,14,12014,ENSMUSG00000040270,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
5263,cg02676375,0.0000616,0.0000066,9.328960778,2.11E-18,gain,yes,-0.000000241,0.0000112,-0.021499909,0.982860708,neg,ns,0.00460907,0.003284932,1.403094501,0.161589442,pos,ns,0.791587018,0.000091,0.000112969,0.805513012,0.421141119,pos,ns,0.087695646,Tlx3,Tlx3_Promoter,11,33203600,33203649,33203648,33203649,50,+,TCTTTCTTGAACCGAACCTGGAGTTTCCGCTGCTAATTCCTCTCCTGCCG,Promoter (<=1kb),11,33200752,33203589,2838,2,Tlx3-201,-11,Tlx3-201,Tlx3,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,4,20,27140,ENSMUSG00000040610,conserved gene and region,11,33202715,33203697,983,*,983,96,0.695829095,0.806819251,0.097660224,1.02E-71,CpGisland,TRUE,NA,NRS
8852,cg01041720,-0.000000703,0.00000379,-0.185357833,0.853069596,loss,ns,-0.000000138,0.00000644,-0.021459512,0.982892907,neg,ns,-0.001933069,0.001887423,-1.024184281,0.306546779,neg,ns,0.513503242,0.0000223,0.0000649,0.343915312,0.73114313,pos,ns,0.863621587,Ldb1,Ldb1_Exon,19,46033337,46033386,46033385,46033386,50,-,ACATCCTGAGAGTGGCGGAGGTCCCCAAACATAATCGGGGCAAGGGCTCG,"Exon (Ldb1-207/Ldb1, exon 11 of 11)",19,46031570,46045210,13641,2,Ldb1-207,11824,Ldb1-207;Ldb1-206;Ldb1-202;Ldb1-208;Ldb1-201;Ldb1-205;Ldb1-203;Ldb1-204,Ldb1;Ldb1;Ldb1;Ldb1;Ldb1;Ldb1;Ldb1;Ldb1,0;0;0;0;0;0;1492;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,9,16825,ENSMUSG00000025223,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16908,cg27512951,-0.00000189,0.00000262,-0.722309497,0.470648737,loss,ns,9.55E-08,0.00000446,0.021424822,0.982920557,pos,ns,0.000101474,0.001305271,0.077741317,0.93808398,pos,ns,0.027758281,0.0000087,0.0000449,0.193733256,0.846511631,pos,ns,0.945572747,Eif4e2,Eif4e2_threeUTR,1,87232402,87232451,87232450,87232451,50,+,GGGCCTGGGAGGAGTTTCATGGCCTGGTGAACAGCAGCGGCCGCTGATCG,3' UTR,1,87213914,87234711,20798,1,Eif4e2-201,18488,Eif4e2-206;Eif4e2-201;Eif4e2-202;Eif4e2-207;Eif4e2-204,Eif4e2;Eif4e2;Eif4e2;Eif4e2;Eif4e2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,6,26987,ENSMUSG00000026254,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18963,cg02052087,-0.00000272,0.00000299,-0.908039451,0.364562726,loss,ns,-0.000000109,0.00000509,-0.021417368,0.982926498,neg,ns,-0.001182062,0.001490224,-0.793210859,0.42826166,neg,ns,0.368290804,0.0000534,0.0000512,1.041737079,0.298345332,pos,ns,0.90636408,Mitf,Mitf_Intergenic_downstream,6,98080274,98080323,98080274,98080275,50,-,CGGAGTCTCTAGTGTGCAGAATTGCTCCTTTTGATATGAAAGGTTAATTC,Distal Intergenic,6,97991921,98018175,26255,1,Mitf-208,88402,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,16,17342,ENSMUSG00000035158,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5232,cg24349098,-0.00000452,0.00000763,-0.591474533,0.554633569,loss,ns,0.000000278,0.000013,0.021402671,0.982938212,pos,ns,-0.004715141,0.003799493,-1.240992262,0.215546894,neg,ns,0.66645823,0.0000492,0.000130664,0.376593812,0.706733118,pos,ns,0.849347559,Chchd3,Chchd3_Intergenic_upstream,6,33137137,33137186,33137137,33137138,50,-,CGAAGCAGATTTTTTAGACAGAATGGTTACCCCAACTGTGTAATTAAGAG,Distal Intergenic,6,32792217,33060260,268044,2,Chchd3-201,-76926,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,5,66075,ENSMUSG00000053768,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5902,cg22787234,-0.0000103,0.00000406,-2.540575527,0.011554553,loss,ns,0.000000148,0.00000691,0.021378605,0.982957394,pos,ns,-0.006752369,0.002023117,-3.33760738,0.000947954,neg,ns,3.023212839,0.000190961,0.0000696,2.744683675,0.006410114,pos,ns,0.884376142,Ctnna1,Ctnna1_Exon,18,35212848,35212897,35212848,35212849,50,+,CGGAGCTGCCTGTGGTTCTGAACCATTGAGCACTGCCTAATTCTTCTTAA,"Exon (Lrrtm2-201/Lrrtm2, exon 2 of 2)",18,35118859,35254779,135921,1,Ctnna1-201,93989,Ctnna1-201;Ctnna1-204;Ctnna1-210;Ctnna1-203;Ctnna1-202;Lrrtm2-201;Lrrtm2-202;Lrrtm2-203,Ctnna1;Ctnna1;Ctnna1;Ctnna1;Ctnna1;Lrrtm2;Lrrtm2;Lrrtm2,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,13,12385,ENSMUSG00000037815,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13256,cg25291768,0.00000457,0.00000792,0.577036757,0.564333424,gain,ns,0.000000288,0.0000135,0.021371473,0.982963079,pos,ns,0.001640601,0.003944198,0.415952893,0.677732276,pos,ns,0.168941831,-0.0000468,0.000135641,-0.344895332,0.73040694,neg,ns,0.702686736,Gm44690,Gm44690_Promoter,7,69891701,69891750,69891749,69891750,50,+,CTCTCATGTCTGTTTTTAAATAAGTACTTGTACGTCCAATGACCTTGTCG,Promoter (7-8kb),7,69883979,69884360,382,2,Gm44690-201,-7341,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,5,24,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8510,cg04675439,0.00000326,0.00000316,1.032374311,0.302701532,gain,ns,-0.000000115,0.00000537,-0.021357288,0.982974385,neg,ns,-0.000203463,0.001572917,-0.129354149,0.897161314,neg,ns,0.047129462,0.0000181,0.0000541,0.334876087,0.737945036,pos,ns,0.919978119,Lbx1,Lbx1_Intergenic_upstream,19,45248925,45248974,45248973,45248974,50,+,TCCAAGCCAGGGAGACTGGTGCCCATTCCGGCTGCAGCCAATCAATCCCG,Distal Intergenic,19,45232684,45235812,3129,2,Lbx1-201,-13113,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,15,50,16814,ENSMUSG00000025216,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24276,cg18702811,-0.00000544,0.00000179,-3.038047332,0.002583667,loss,ns,6.46E-08,0.00000304,0.021240517,0.983067458,pos,ns,0.000850606,0.000890804,0.954874844,0.340384992,pos,ns,0.468029596,-0.0000606,0.0000306,-1.97965777,0.048626238,neg,ns,0.965369426,Pou3f1,Pou3f1_Intron,4,124465471,124465520,124465519,124465520,50,+,TCCATTAAGAATAATTACGGCTGAACAATTTTTGATGCCTGTAACCTTCG,"Intron (1700057H15Rik-202/1700057H15Rik-202, intron 2 of 3)",4,124656807,124660655,3849,1,Pou3f1-201,-191287,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,43,85,18991,ENSMUSG00000090125,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20396,cg23905307,0.000101922,0.0000186,5.486861796,8.51E-08,gain,yes,-0.000000668,0.0000316,-0.021171938,0.98312212,neg,ns,0.004785299,0.009245279,0.517593833,0.605110831,pos,ns,0.218165073,-0.000161905,0.000317944,-0.509224832,0.610956909,neg,ns,0.486453909,Hoxc4,Hoxc4_Intron,15,103029258,103029307,103029258,103029259,50,-,CGCTGGAAGATCTAAAGGCCATTTGCGAAGAGACAAATTTCAATGGAGTT,"Intron (Hoxc4-202/Hoxc4, intron 1 of 3)",15,103018934,103036405,17472,1,Hoxc4-202,10324,Hoxc4-202,Hoxc4,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,91,15423,ENSMUSG00000075394,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
16827,cg06329971,-0.0000315,0.00000838,-3.759967092,0.000203091,loss,ns,0.0000003,0.0000142,0.021081846,0.98319393,pos,ns,-0.00939864,0.004171129,-2.253260401,0.024941422,neg,ns,1.603078791,0.00000687,0.000143445,0.047899321,0.961827324,pos,ns,0.815190274,Gm49465,Gm49465_Intergenic_upstream,15,86688486,86688535,86688486,86688487,50,-,CGTCTCAAGTGTGGTGGAGACATTACTGCTAATTGGCAATAAGAAATGGT,Distal Intergenic,15,86726495,86726759,265,1,Gm49465-201,-38009,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22634,cg00178703,-0.0000335,0.00000719,-4.659924493,0.0000047,loss,ns,0.000000255,0.0000122,0.020894227,0.983343474,pos,ns,-0.006356293,0.00357781,-1.776587867,0.07661672,neg,ns,1.115676447,0.000123752,0.000123041,1.005784817,0.31530351,pos,ns,0.783445726,Tsen2,Tsen2_Intergenic_upstream,6,115503749,115503798,115503749,115503750,50,+,CGTCTCTTTACAGTTGGGCAGAGCCGGCTGGGCCTCCTCAAACTTCCATA,Distal Intergenic,6,115544664,115554272,9609,1,Tsen2-203,-40866,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,381802,ENSMUSG00000042389,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11728,cg16052516,0.000000328,0.00000204,0.161026857,0.872177135,gain,ns,-7.22E-08,0.00000346,-0.020872515,0.983360779,neg,ns,0.00156387,0.001013944,1.542362578,0.124005663,pos,ns,0.906558483,-0.000053,0.0000349,-1.521235794,0.129219999,neg,ns,0.942633892,Marchf7,Marchf7_Exon,2,60247468,60247517,60247468,60247469,50,+,CGGATGCACCAAACATGCAGCGGTAATAAGCCAGATTTTACTCAGGTGTG,"Exon (Marchf7-208/Marchf7, exon 5 of 6)",2,60209887,60249211,39325,1,Marchf7-203,37581,Cd302-201;Cd302-202;Marchf7-203;Marchf7-209;Marchf7-202;Marchf7-201;Marchf7-208;Marchf7-206;Marchf7-204;Marchf7-207,Cd302;Cd302;Marchf7;Marchf7;Marchf7;Marchf7;Marchf7;Marchf7;Marchf7;Marchf7,36901;36971;0;0;0;0;0;10580;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12912,cg05853816,-0.0000197,0.00000928,-2.126230846,0.034273954,loss,ns,-0.000000328,0.0000158,-0.02079019,0.983426398,neg,ns,-0.011372055,0.004620352,-2.461296154,0.014388072,neg,ns,1.841997404,0.000167523,0.000158894,1.054309152,0.292562423,pos,ns,0.124988674,Arid5b,Arid5b_Intron,10,68277300,68277349,68277300,68277301,50,+,CGGGCAGATCTGCAAGTTATTTGAATGTATTATTCCAGTACCTGTCATTT,"Intron (Arid5b-204/Arid5b, intron 2 of 9)",10,68092520,68278740,186221,2,Arid5b-204,1391,Arid5b-204;Arid5b-201;Arid5b-202,Arid5b;Arid5b;Arid5b,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,33,71371,ENSMUSG00000019947,conserved gene and region,10,68277171,68277311,141,*,141,14,0.581560284,1.2,0.09929078,5.96E-11,CpGisland,TRUE,U1,Pr-A
27094,cg19411464,-0.00000541,0.0000015,-3.600142382,0.00037018,loss,ns,0.000000053,0.00000255,0.020761466,0.983449293,pos,ns,0.003408416,0.000747474,4.559909654,0.00000738,pos,ns,5.132117442,-0.000127143,0.0000257,-4.94613639,0.00000124,neg,yes,0.954661263,Srsf11,Srsf11_threeUTR,3,158023344,158023393,158023344,158023345,50,+,CGTGTCGGCTGCTTCACTATAAAGCACACAGAAAAATCAAGATACACAAG,3' UTR,3,158010473,158036639,26167,2,Srsf11-204,13246,Srsf11-204;Srsf11-213;Srsf11-202;Srsf11-207;Srsf11-201;Srsf11-217;Srsf11-218;Srsf11-206;Srsf11-209;Srsf11-210;Srsf11-212;Srsf11-203;Srsf11-208;Srsf11-215,Srsf11;Srsf11;Srsf11;Srsf11;Srsf11;Srsf11;Srsf11;Srsf11;Srsf11;Srsf11;Srsf11;Srsf11;Srsf11;Srsf11,0;0;0;-204;0;-1340;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,6,8,69207,ENSMUSG00000055436,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
26403,cg12606054,0.00000986,0.0000043,2.293004788,0.022516976,gain,ns,0.000000152,0.0000073,0.020751718,0.983457063,pos,ns,-0.002641956,0.002139727,-1.234716182,0.217871218,neg,ns,0.661800139,0.0000762,0.0000736,1.035474085,0.301254623,pos,ns,0.064949955,Gsx1,Gsx1_Intergenic_downstream,5,147223639,147223688,147223639,147223640,50,-,CGAAACAAAATACTTGAATCCTGAAAAAGACCCTTTGTAAGTTTCTTTAG,Distal Intergenic,5,147188696,147190947,2252,1,Gsx1-201,34992,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,12,20,14842,ENSMUSG00000053129,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
95,cg05149797,-0.00000324,0.00000149,-2.170991784,0.030690251,loss,ns,5.21E-08,0.00000253,0.020556545,0.983612629,pos,ns,-0.000492151,0.000741804,-0.66345206,0.507534138,neg,ns,0.294534741,-0.0000214,0.0000255,-0.837472642,0.402972128,neg,ns,0.956458486,Sec14l3,Sec14l3_Exon,11,4067950,4067999,4067998,4067999,50,-,GCCCAGGTGATCCAGAAGTACATGCCTGGGGGCCTGTGTGGCTATGACCG,"Exon (Sec14l3-201/Sec14l3, exon 5 of 12)",11,4064841,4077736,12896,1,Sec14l3-201,3109,Sec14l3-201;Sec14l3-205;Sec14l3-202;Sec14l3-203;Sec14l3-204,Sec14l3;Sec14l3;Sec14l3;Sec14l3;Sec14l3,0;0;0;0;-3410,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,380683,ENSMUSG00000054986,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2312,cg08534858,-0.00000665,0.00000413,-1.61015559,0.108381648,loss,ns,-0.000000144,0.00000702,-0.020553063,0.983615405,neg,ns,-0.002029313,0.002055213,-0.987397856,0.324217672,neg,ns,0.489163318,0.000111626,0.0000707,1.579343571,0.115277068,pos,ns,0.931730394,Meis1,Meis1_Exon,11,19011235,19011284,19011235,19011236,50,+,CGCATACCTGGTCAGTTAGATTTGCTGATCTTGTTATATCTTCACTGTCT,"Exon (Meis1-206/Meis1, exon 6 of 10)",11,18879817,19018985,139169,2,Meis1-206,7701,Meis1-206;Meis1-202;Meis1-209;Meis1-201;Meis1-203;Meis1-208;Meis1-207;Meis1-204;Meis1-205,Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1;Meis1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,21,88,17268,ENSMUSG00000020160,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7849,cg22413784,0.000100757,0.00000987,10.21136056,2.71E-21,gain,yes,-0.000000345,0.0000168,-0.020552669,0.983615719,neg,ns,0.016742502,0.004910967,3.409206989,0.0007377,pos,ns,3.132120235,-0.000446193,0.000168888,-2.641949386,0.008661266,neg,ns,0.188010297,Boc,Boc_Intron,16,44531136,44531185,44531184,44531185,50,-,CTTGCCATATGGGGGCTGTGTTGCCCCGGGAAACACTAACAGGCAGAACG,"Intron (Boc-201/Boc, intron 1 of 18)",16,44485049,44558897,73849,2,Boc-201,27712,Boc-201,Boc,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,117606,ENSMUSG00000022687,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22875,cg05847769,-0.000046,0.0000116,-3.957273323,0.000094,loss,ns,0.000000404,0.0000198,0.02043773,0.983707334,pos,ns,0.001945167,0.00578885,0.336019537,0.737083451,pos,ns,0.132483339,-0.000130944,0.000199078,-0.657752092,0.511185552,neg,ns,0.67425225,Meis2,Meis2_Exon,2,116061541,116061590,116061541,116061542,50,-,CGCCAGCTCGCACTTCTCAAAGACCAGAGCTAACAGAGGAAACAACGGGT,"Exon (Meis2-201/Meis2, exon 3 of 12)",2,115863064,116065047,201984,2,Meis2-201,3457,Meis2-201;Meis2-203;Meis2-205;Meis2-206;Meis2-204;Meis2-202;Meis2-213;Meis2-210;Meis2-209;Meis2-212,Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2;Meis2,0;0;0;0;0;0;0;0;0;-2699,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,15,97,17536,ENSMUSG00000027210,conserved gene but different region,2,116061432,116061626,195,*,195,18,0.615384615,0.976084538,0.092307692,2.11E-13,CpGisland,TRUE,NA,NRS
16746,cg05354872,0.0000481,0.00000818,5.877835928,1.07E-08,gain,yes,0.000000281,0.0000139,0.020219815,0.983881029,pos,ns,0.004329262,0.00407053,1.063562268,0.288354804,pos,ns,0.540072808,-0.000068,0.000139985,-0.48596559,0.627334886,neg,ns,0.500198967,Esrrb,Esrrb_Intron,12,86383950,86383999,86383998,86383999,50,-,GGGGAATATTAATGATTCAATTTTCAACCGGGTTCCACTCCAGGGCCTCG,"Intron (Esrrb-204/Esrrb, intron 1 of 6)",12,86361117,86521628,160512,1,Esrrb-204,22833,Esrrb-204,Esrrb,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,19,26380,ENSMUSG00000021255,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9799,cg16786028,0.0000101,0.00000347,2.922932857,0.003722657,gain,ns,-0.000000119,0.00000589,-0.02017592,0.983916016,neg,ns,0.002056984,0.001725803,1.191899502,0.234212294,pos,ns,0.630390312,-0.0000261,0.0000594,-0.439998466,0.660244825,neg,ns,0.042055589,Trps1,Trps1_Promoter,15,50890058,50890107,50890106,50890107,50,+,TCAAGACACCAACACTATTAATATCAAAGGAGCCTTCGCGGAGGAAAGCG,Promoter (<=1kb),15,50846176,50890463,44288,2,Trps1-208,356,Trps1-202;Trps1-206;Trps1-204;Trps1-205;Trps1-201;Trps1-208,Trps1;Trps1;Trps1;Trps1;Trps1;Trps1,0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,9,36,83925,ENSMUSG00000038679,conserved gene and region,15,50890094,50890382,289,*,289,43,0.806228374,0.917663565,0.148788927,2.36E-41,CpGisland,TRUE,U2,Pr-W
16079,cg23296078,-0.0000996,0.0000172,-5.789453239,1.73E-08,loss,yes,0.000000589,0.0000292,0.020161217,0.983927736,pos,ns,-0.026331623,0.008562758,-3.075133415,0.002291406,neg,ns,2.639897904,0.000746752,0.000294473,2.535897724,0.011706784,pos,ns,0.690797389,Bnc2,Bnc2_Intron,4,84362616,84362665,84362616,84362617,50,-,CGATTGATATAAATTCCATCTGCTCAGCAGCCAAGTGACAGAGAAGAAAT,"Intron (Bnc2-201/Bnc2, intron 6 of 7)",4,84275095,84675034,399940,2,Bnc2-201,312369,Bnc2-201;Bnc2-202;Bnc2-214;Bnc2-215;Bnc2-206;Bnc2-211;Bnc2-205;Bnc2-217;Bnc2-207;Bnc2-212,Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2;Bnc2,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,69,91,242509,ENSMUSG00000028487,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22417,cg04582364,0.0000723,0.00000808,8.947534467,3.39E-17,gain,yes,-0.000000275,0.0000137,-0.020035904,0.984027621,neg,ns,0.023643183,0.004023158,5.876772012,1.08E-08,pos,ns,7.966708869,-0.000799337,0.000138356,-5.777388763,1.85E-08,neg,yes,0.089342641,Fst,Fst_Intron,13,114456886,114456935,114456886,114456887,50,+,CGCCCCAGCCATATCAATGTCAGTTACCAGTGACCCAGACACAACACGTG,"Intron (Fst-202/Fst, intron 1 of 5)",13,114452290,114458951,6662,2,Fst-202,2016,Fst-202;Fst-201;Fst-203;Fst-206;Fst-205;Fst-204,Fst;Fst;Fst;Fst;Fst;Fst,0;0;-2335;-650;0;-1676,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,7,14313,ENSMUSG00000021765,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
22420,cg00806925,3.39E-08,0.000000937,0.036149367,0.971186525,gain,ns,3.18E-08,0.00000159,0.020002371,0.984054349,pos,ns,-0.0000215,0.000466367,-0.046013205,0.963329352,neg,ns,0.016225207,-0.0000195,0.000016,-1.217096168,0.224493359,neg,ns,0.030366393,Fst,Fst_Promoter,13,114460242,114460291,114460290,114460291,50,-,AAAGATCCCATTACAATGGGATCTGTCTGGACAGACTATAATAGATCCCG,Promoter (1-2kb),13,114452290,114458951,6662,2,Fst-202,-1340,Fst-202;Fst-201;Fst-206;Fst-205,Fst;Fst;Fst;Fst,0;0;-4006;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,4,7,14313,ENSMUSG00000021765,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
16791,cg17949899,0.0000222,0.00000362,6.134731107,2.60E-09,gain,yes,0.000000123,0.00000615,0.019932855,0.984109759,pos,ns,0.000529829,0.001801682,0.294074705,0.768897622,pos,ns,0.114131482,0.0000818,0.000062,1.320865388,0.187520461,pos,ns,0.936403933,Lrba,Lrba_Exon,3,86532168,86532217,86532168,86532169,50,+,CGACACATCCTGAAGCGACACTAAAAACAGCCGTGGAACATGGTCAGTGT,"Exon (Lrba-202/Lrba, exon 38 of 51)",3,86224680,86746712,522033,1,Lrba-202,307488,Lrba-202;Lrba-204;Lrba-201;Lrba-208,Lrba;Lrba;Lrba;Lrba,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,17,45,80877,ENSMUSG00000028080,conserved gene but different region,3,86532037,86532200,164,*,164,13,0.506097561,1.239534884,0.079268293,6.06E-09,CpGisland,TRUE,U15,NS
10016,cg12374442,-0.00000226,0.000000575,-3.92430534,0.000107185,loss,ns,1.94E-08,0.000000977,0.019860945,0.984167077,pos,ns,0.0000154,0.000286227,0.053730889,0.957184182,pos,ns,0.019004487,-0.00000447,0.00000984,-0.454107006,0.650069581,neg,ns,0.017934231,Jade2,Jade2_Promoter,11,51858185,51858234,51858233,51858234,50,+,TATTAATGACGTACTTAAAATTTGCCATTTCTCCCTGCGTCAAAAAGACG,Promoter (<=1kb),11,51813455,51857653,44199,2,Jade2-202,-532,Jade2-201;Jade2-202;Jade2-203;Jade2-204,Jade2;Jade2;Jade2;Jade2,0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,4,6,76901,ENSMUSG00000020387,conserved gene and region,11,51858180,51858418,239,*,239,21,0.527196653,1.276125095,0.087866109,4.12E-15,CpGisland,TRUE,NA,NRS
2799,cg04824328,-0.0000022,0.00000263,-0.834837386,0.404452172,loss,ns,8.85E-08,0.00000447,0.019806499,0.984210476,pos,ns,0.001719439,0.001309705,1.312843738,0.190206646,pos,ns,0.720774311,-0.0000948,0.000045,-2.104754494,0.036117327,neg,ns,0.93379576,Slc26a5,Slc26a5_Exon,5,21834312,21834361,21834312,21834313,50,-,CGACGCCTAGGGAACACACGTTGAGGTTTTTAACATTCTGCAACACAGCA,"Exon (Slc26a5-202/Slc26a5, exon 6 of 18)",5,21810655,21861998,51344,2,Slc26a5-202,27637,Slc26a5-202;Slc26a5-201;Slc26a5-204;Slc26a5-203,Slc26a5;Slc26a5;Slc26a5;Slc26a5,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,80979,ENSMUSG00000029015,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
319,cg04986618,-0.0000664,0.0000108,-6.14846641,2.41E-09,loss,yes,0.000000361,0.0000183,0.019708416,0.984288656,pos,ns,-0.013468278,0.005373002,-2.506657959,0.012699507,neg,ns,1.896213142,0.000293689,0.000184777,1.589422526,0.112984333,pos,ns,0.8242832,Klhl29,Klhl29_Intron,12,5102631,5102680,5102631,5102632,50,-,CGACACAAAAGCGTCCTACAAAGGAACAGACCCGACCACAGCTGGAAGGA,"Intron (Klhl29-201/Klhl29, intron 6 of 13)",12,5077472,5375682,298211,2,Klhl29-201,273002,Klhl29-201;Klhl29-202,Klhl29;Klhl29,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,17,23,208439,ENSMUSG00000020627,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25930,cg11846721,-0.00000194,0.00000194,-0.99982782,0.318173627,loss,ns,6.46E-08,0.0000033,0.019612616,0.984365017,pos,ns,0.00073098,0.000965664,0.756971385,0.449641941,pos,ns,0.347133186,-0.0000407,0.0000332,-1.224577414,0.221664229,neg,ns,0.956904577,Sdk1,Sdk1_Intron,5,141245156,141245205,141245156,141245157,50,-,CGTATTGAAAATTCATATTACAGAGGAGATGTCACCATTTGACAAAAGCT,"Intron (Sdk1-202/Sdk1, intron 1 of 44)",5,141241490,142215586,974097,1,Sdk1-202,3666,Sdk1-202;Sdk1-203,Sdk1;Sdk1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,1,330222,ENSMUSG00000039683,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
8394,cg04305771,-0.0000187,0.00000363,-5.149713657,0.000000465,loss,yes,0.000000121,0.00000616,0.019607542,0.984369061,pos,ns,0.001931672,0.001804881,1.070248985,0.28533983,pos,ns,0.544637602,0.0000418,0.0000621,0.672775405,0.501591372,pos,ns,0.935541249,Zeb2,Zeb2_Intron,2,45087874,45087923,45087922,45087923,50,-,CTTCTCCCATTTGCTGCAGTTCCCAGGCGGACAAACTTGCATTATGTACG,"Intron (Zeb2-212/Zeb2, intron 3 of 10)",2,44983632,45117395,133764,2,Zeb2-212,29472,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,103,158,24136,ENSMUSG00000026872,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12938,cg19183840,-0.0000323,0.0000104,-3.114001063,0.002018012,loss,ns,-0.000000343,0.0000176,-0.019441078,0.984501748,neg,ns,0.0000731,0.005169168,0.014133811,0.988732317,pos,ns,0.00492127,-0.000368968,0.000177767,-2.075568175,0.038758134,neg,ns,0.810891591,Gm44887,Gm44887_Intergenic_downstream,7,68510538,68510587,68510586,68510587,50,+,ATGTAATATACAAGCATTGATTCTGATATTTCCCCTGATAACAGTGCTCG,Distal Intergenic,7,68598677,68598854,178,2,Gm44887-201,88267,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,4,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7900,cg27361758,-0.0000243,0.00000768,-3.16816483,0.001686982,loss,ns,-0.000000253,0.000013,-0.019388975,0.984543278,neg,ns,-0.008117617,0.003821348,-2.124281268,0.03443789,neg,ns,1.462963462,-0.00000215,0.000131416,-0.016335589,0.986977174,neg,ns,0.770573732,Pax5,Pax5_Intron,4,44623354,44623403,44623402,44623403,50,+,TAAACAAGGCCTTGGGACCATAAATAATAATAAATCATGACGTCTGCACG,"Intron (Pax5-201/Pax5, intron 6 of 9)",4,44524757,44710487,185731,2,Pax5-201,87084,Pax5-201;Pax5-202;Pax5-203;Pax5-204;Pax5-205;Pax5-207;Pax5-206;Pax5-209;Pax5-210;Pax5-212;Pax5-213;Pax5-214;Pax5-215;Pax5-220;Pax5-211,Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,19,45,18507,ENSMUSG00000014030,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4483,cg07705206,-0.000000765,0.00000343,-0.223150741,0.823565157,loss,ns,0.000000113,0.00000582,0.0193705,0.984558005,pos,ns,0.001029256,0.001705676,0.603430049,0.546663893,pos,ns,0.26227961,-0.000105351,0.0000587,-1.796019666,0.073465021,neg,ns,0.944343019,Cacna2d3,Cacna2d3_Exon,14,29063894,29063943,29063942,29063943,50,-,GTACCCTTGATGTCTGTATAATAGTAGTCATTTGTCATCACCAAAACCCG,"Exon (Cacna2d3-201/Cacna2d3, exon 20 of 38)",14,28904943,29721864,816922,2,Cacna2d3-201,657921,Cacna2d3-201;Cacna2d3-205;Cacna2d3-206,Cacna2d3;Cacna2d3;Cacna2d3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,4,12294,ENSMUSG00000021991,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3352,cg24290583,-0.0000466,0.0000111,-4.196480674,0.0000354,loss,ns,0.000000363,0.0000188,0.019251096,0.984653181,pos,ns,0.013009467,0.005521446,2.356170528,0.019086623,pos,ns,1.7192709,-0.000352608,0.000189882,-1.856986171,0.064261479,neg,ns,0.679024812,Srrm2,Srrm2_Exon,17,23807096,23807145,23807144,23807145,50,-,GAGGCTGCCCTGGTGAAGCGGCCTAATCCTGACATCCTGGACCACGAGCG,"Exon (Srrm2-206/Srrm2, exon 3 of 5)",17,23790662,23808518,17857,1,Srrm2-206,16434,Srrm2-206;Srrm2-210;Srrm2-201;Srrm2-212;Srrm2-211;Srrm2-208;Srrm2-203;Srrm2-207,Srrm2;Srrm2;Srrm2;Srrm2;Srrm2;Srrm2;Srrm2;Srrm2,0;0;0;0;0;0;0;-4755,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,13,75956,ENSMUSG00000039218,conserved gene and region,17,23806919,23807174,256,*,256,25,0.6953125,0.810536981,0.09765625,4.40E-19,CpGisland,TRUE,NA,NRS
7445,cg14811360,-0.000017,0.0000043,-3.959625875,0.0000932,loss,ns,0.00000014,0.0000073,0.019250609,0.984653569,pos,ns,-0.000627093,0.002138198,-0.293280974,0.769503628,neg,ns,0.113789328,-0.000141099,0.0000735,-1.918864927,0.055919475,neg,ns,0.903845588,Grik4,Grik4_Exon,9,42675216,42675265,42675264,42675265,50,-,CTTCTCTCCACAGATGTTGCTGATGATGGAGCTGGAGGCTGGGCTGGACG,"Exon (Grik4-202/Grik4, exon 5 of 21)",9,42518135,42944493,426359,2,Grik4-202,269228,Grik4-202;Grik4-201,Grik4;Grik4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,8,110637,ENSMUSG00000032017,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2237,cg22424741,-0.00000194,0.00000462,-0.420903717,0.674117042,loss,ns,0.000000151,0.00000785,0.019239828,0.984662162,pos,ns,0.004667562,0.002298979,2.030275962,0.04318197,pos,ns,1.364697548,-0.000222532,0.0000791,-2.81466352,0.005195183,neg,ns,0.902022979,Gm30341,Gm30341_Intergenic_upstream,3,18715813,18715862,18715861,18715862,50,+,TTTCCTGCGGTAAGTTCATTACTCGTATTTTGTCCAGAATTAGTGAAGCG,Distal Intergenic,3,18753077,18753365,289,1,Gm30341-201,-37215,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,17,23,102632201,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5964,cg06325045,0.00000358,0.000003,1.195961504,0.232625551,gain,ns,9.79E-08,0.00000509,0.0192351,0.984665932,pos,ns,0.004110173,0.00149096,2.756729302,0.006184217,pos,ns,2.208715267,-0.000202966,0.0000513,-3.958452468,0.0000936,neg,ns,0.924100509,Paip2,Paip2_Exon,18,35610912,35610961,35610912,35610913,50,+,CGCAGCAGTACTAGCCCAAGCATCATCAATGAAGATGTGATTATTAACGG,"Exon (Paip2-201/Paip2, exon 2 of 4)",18,35598617,35617186,18570,1,Paip2-201,12295,Paip2-201;Paip2-208;Paip2-206;Paip2-204;Paip2-209;Paip2-202;Paip2-205;Paip2-207;Paip2-203;Paip2-211;Paip2-210;Slc23a1-201,Paip2;Paip2;Paip2;Paip2;Paip2;Paip2;Paip2;Paip2;Paip2;Paip2;Paip2;Slc23a1,0;0;0;0;0;0;0;0;0;0;0;16283,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,67869,ENSMUSG00000037058,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
11619,cg03493387,0.00000345,0.00000367,0.939588105,0.348160402,gain,ns,-0.000000119,0.00000623,-0.019155425,0.984729439,neg,ns,0.001223618,0.001826027,0.670098614,0.50329378,pos,ns,0.298178437,-0.0000162,0.0000628,-0.257721502,0.796792848,neg,ns,0.045303038,Emx2,Emx2_Intergenic_downstream,19,59467219,59467268,59467267,59467268,50,-,GATTTGATAGCAGCTCTGTTCAAACTAGATAATTATATCTTTTCAAGTCG,Downstream (1-2kb),19,59462802,59464215,1414,1,Emx2-203,4466,Emx2-201;Emx2-202;Emx2-203,Emx2;Emx2;Emx2,0;7700;4417,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,15,23,13797,ENSMUSG00000043969,mapped to different genes,19,59467121,59467392,272,*,272,18,0.525735294,0.993103448,0.066176471,7.09E-11,CpGisland,TRUE,U13,Hc-P
12427,cg23394633,-0.0000319,0.00000627,-5.086379131,0.000000633,loss,yes,-0.000000202,0.0000106,-0.019006021,0.984848529,neg,ns,-0.007361327,0.003119446,-2.359818859,0.018903326,neg,ns,1.723461777,0.000123416,0.000107277,1.15043465,0.250851548,pos,ns,0.583549575,Gm13750,Gm13750_Intron,1,64191798,64191847,64191846,64191847,50,+,TTAAGGGACTTCAGGCCTGTGAATAAATGATGACCCAGTGGTTAGGGGCG,"Intron (Gm28981-201/Gm28981-201, intron 1 of 1)",1,64150201,64150665,465,1,Gm13750-201,41597,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,2,241074,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
25075,cg06022449,-0.00000518,0.00000199,-2.603828744,0.009662634,loss,ns,-0.000000064,0.00000338,-0.018934625,0.984905439,neg,ns,0.000981228,0.000989988,0.991150743,0.322384971,pos,ns,0.491625212,-0.0000376,0.000034,-1.10356604,0.270637335,neg,ns,0.951760559,Gpcpd1,Gpcpd1_fiveUTR,2,132558624,132558673,132558624,132558625,50,-,CGTGGTTGTAGATGAGTCTCCCACTTGTGAACTATCACTTGACATGGACC,5' UTR,2,132529082,132578178,49097,2,Gpcpd1-212,19505,Gpcpd1-212;Gpcpd1-204;Gpcpd1-202;Gpcpd1-213;Gpcpd1-211;Gpcpd1-205;Gpcpd1-201;Gpcpd1-206;Gpcpd1-203;Gpcpd1-210,Gpcpd1;Gpcpd1;Gpcpd1;Gpcpd1;Gpcpd1;Gpcpd1;Gpcpd1;Gpcpd1;Gpcpd1;Gpcpd1,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,3,74182,ENSMUSG00000027346,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13714,cg11681358,-0.0000112,0.0000055,-2.033611347,0.042842169,loss,ns,-0.000000177,0.00000935,-0.018915658,0.984920557,neg,ns,0.004917354,0.002739007,1.795305539,0.073578932,pos,ns,1.133246522,-0.000120409,0.0000942,-1.27830642,0.202097663,neg,ns,0.071066046,Atoh8,Atoh8_Intron,6,72216660,72216709,72216708,72216709,50,+,TCCTGTTATTCATAAGCGAGTTTCCTCTCTCACAAAGAACCTTTTGCACG,"Intron (Atoh8-202/Atoh8, intron 3 of 3)",6,72206177,72234537,28361,2,Atoh8-202,17828,Atoh8-202;Atoh8-201,Atoh8;Atoh8,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,7,71093,ENSMUSG00000037621,conserved gene but different region,6,72216611,72216743,133,*,133,10,0.533834587,1.104651163,0.07518797,0.000000942,CpGisland,TRUE,NA,NRS
24272,cg13837730,-0.0000498,0.0000101,-4.940343414,0.00000128,loss,yes,-0.000000324,0.0000171,-0.018904233,0.984929664,neg,ns,-0.004971665,0.005021331,-0.990108985,0.322893025,neg,ns,0.490941336,0.000154931,0.000172683,0.89719704,0.370310019,pos,ns,0.84772093,Pou3f1,Pou3f1_Intron,4,124460014,124460063,124460062,124460063,50,+,AGCTGCAAAATGCCTCGATATTTTCAGAGGCCTTATTGTGCTTAAACTCG,"Intron (1700057H15Rik-202/1700057H15Rik-202, intron 2 of 3)",4,124656807,124660655,3849,1,Pou3f1-201,-196744,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,43,85,18991,ENSMUSG00000090125,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21332,cg23055029,0.0000239,0.00000636,3.761513163,0.000201894,gain,ns,0.000000204,0.0000108,0.01886996,0.984956983,pos,ns,0.008834578,0.003167756,2.788907467,0.005615655,pos,ns,2.250599596,-0.000272451,0.000108939,-2.500950795,0.012901783,neg,ns,0.012924739,Syt9,Syt9_fiveUTR,7,107370989,107371038,107371037,107371038,50,+,GATGCGGGGGGGCGATGCCCGGGGCCAGGGACGCGCTCTGTCACCAGGCG,Promoter (<=1kb),7,107370728,107436336,65609,1,Syt9-204,261,Gm19033-201;Syt9-204;Syt9-203;Syt9-201,Gm19033;Syt9;Syt9;Syt9,4917;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,1,60510,ENSMUSG00000062542,conserved gene but different region,7,107370489,107371183,695,*,695,100,0.766906475,0.980087996,0.143884892,7.63E-94,CpGisland,TRUE,U3,Pr-B
12823,cg05397631,0.0000188,0.00000291,6.471273036,3.79E-10,gain,yes,9.26E-08,0.00000494,0.018740213,0.985060404,pos,ns,0.003418654,0.001447055,2.362490575,0.018770078,pos,ns,1.726533919,-0.000108801,0.0000498,-2.186326187,0.029539232,neg,ns,0.060578681,Ebf2,Ebf2_fiveUTR,14,67233642,67233691,67233642,67233643,50,-,CGCAGATCAGAATACAAAAGGAGAAGCAAGAAAATGACACCCAGCCAGGA,Promoter (<=1kb),14,67233292,67429777,196486,1,Ebf2-201,350,Ebf2-201;Ebf2-203;Ebf2-204;Ebf2-202,Ebf2;Ebf2;Ebf2;Ebf2,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,21,13592,ENSMUSG00000022053,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
12946,cg23050161,-0.00000464,0.00000403,-1.151418388,0.250447423,loss,ns,-0.000000128,0.00000684,-0.018655092,0.985128255,neg,ns,0.001223927,0.002003531,0.610885056,0.541723318,pos,ns,0.26622247,-0.0000875,0.0000689,-1.26982815,0.205098205,neg,ns,0.93589924,Gm50259,Gm50259_Intergenic_upstream,18,68631113,68631162,68631161,68631162,50,+,TTGAATCCCTGTGTATAGCAATCAAATTGGAAATCCAGGTCTATTACACG,Distal Intergenic,18,68568411,68568744,334,2,Gm50259-201,-62369,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,7,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22060,cg23703604,-0.0000399,0.0000103,-3.867778846,0.000133869,loss,ns,-0.000000326,0.0000175,-0.018597565,0.985174109,neg,ns,-0.010519964,0.005139488,-2.046889472,0.041511858,neg,ns,1.381827831,-0.0000825,0.000176747,-0.466761388,0.640998467,neg,ns,0.420060533,Plk2,Plk2_Intergenic_downstream,13,110558248,110558297,110558248,110558249,50,-,CGTCCCACTTTCCTGAGAGGAAGCAAGATGTGGGGACAGGAAGGCTGTGT,Distal Intergenic,13,110397797,110399035,1239,1,Plk2-204,160500,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,2,20620,ENSMUSG00000021701,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
24266,cg11809636,-0.00000347,0.00000257,-1.349761608,0.178077252,loss,ns,-0.000000081,0.00000437,-0.018546812,0.985214564,neg,ns,-0.001723647,0.001279458,-1.347169238,0.178909626,neg,ns,0.747366291,0.0000219,0.000044,0.497021081,0.619526485,pos,ns,0.938748936,Clstn3,Clstn3_Exon,6,124449538,124449587,124449538,124449539,50,-,CGCAGAGTGTTCATGTAAGCCACATGCTGCAGGGCATGGTTGAAGGTCTC,"Exon (Clstn3-202/Clstn3, exon 12 of 18)",6,124430759,124462744,31986,2,Clstn3-202,13157,Clstn3-202;Clstn3-201;Clstn3-205,Clstn3;Clstn3;Clstn3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,6,232370,ENSMUSG00000008153,conserved gene and region,6,124449444,124449539,96,*,96,8,0.635416667,0.825806452,0.083333333,0.00000859,CpGisland,TRUE,U11,Tr-P
18564,cg04588674,0.00000245,0.0000107,0.228495868,0.819411422,gain,ns,-0.000000338,0.0000182,-0.018529568,0.98522831,neg,ns,0.001689922,0.005344747,0.31618371,0.752075856,pos,ns,0.123738353,0.000110732,0.000183805,0.602440001,0.5473217,pos,ns,0.280701382,Hoxb6,Hoxb6_Promoter,11,96292371,96292420,96292419,96292420,50,+,TTTGTGATAGAAGTTTATGAGTGGTTGAATCCAGCGATTGGCCGGCGCCG,Promoter (<=1kb),11,96292476,96301569,9094,1,Hoxb6-202,-56,Hoxb6-202;Hoxb7-201;Hoxb7-202,Hoxb6;Hoxb7;Hoxb7,0;0;3656,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,5,16,15414,ENSMUSG00000000690,mapped to different genes,11,96292405,96292440,36,*,36,7,0.75,1.431818182,0.194444444,0.000000102,CpGisland,TRUE,U13,Hc-P
12265,cg01703108,-0.00000514,0.00000253,-2.03232091,0.042973365,loss,ns,7.94E-08,0.00000429,0.018482031,0.985266202,pos,ns,-0.000624488,0.001257893,-0.496455302,0.619925055,neg,ns,0.207660811,-0.0000633,0.0000433,-1.463554397,0.144328953,neg,ns,0.939653766,Epha3,Epha3_Exon,16,63653410,63653459,63653458,63653459,50,-,CAAAACTACTCACGGGTACAAGCCATGGATGGAGGGTCTTTGTCTGCCCG,"Exon (Epha3-201/Epha3, exon 4 of 17)",16,63543534,63864158,320625,2,Epha3-201,210699,Epha3-201;Epha3-203;Epha3-206;Epha3-205,Epha3;Epha3;Epha3;Epha3,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,8,13837,ENSMUSG00000052504,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6756,cg16390009,0.000019,0.00000258,7.364969316,1.61E-12,gain,yes,-0.000000081,0.00000439,-0.018453172,0.985289205,neg,ns,0.001624224,0.001285666,1.263333014,0.207418818,pos,ns,0.683151846,0.00000922,0.0000442,0.208451302,0.835013495,pos,ns,0.099744627,Lhx2,Lhx2_Intron,2,38347961,38348010,38348009,38348010,50,-,CCCATGTTTATCACCGAGTGAGATGACTAATTACACCTTGTCAATCACCG,"Intron (Lhx2-203/Lhx2, intron 1 of 4)",2,38339281,38369199,29919,1,Lhx2-203,8680,Lhx2-203;Lhx2-204;Lhx2-202;Lhx2-201;Lhx2-207;Lhx2-205,Lhx2;Lhx2;Lhx2;Lhx2;Lhx2;Lhx2,0;0;0;0;-3758;-4522,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,22,33,16870,ENSMUSG00000000247,mapped to different genes,2,38347822,38348178,357,*,357,27,0.518207283,1.126841244,0.075630252,1.55E-17,CpGisland,TRUE,U3,Pr-B
11125,cg02257143,0.0000288,0.00000919,3.132267202,0.00190021,gain,ns,-0.000000288,0.0000156,-0.018422444,0.985313699,neg,ns,-0.006308074,0.004573444,-1.379283082,0.168801706,neg,ns,0.772623169,0.000280321,0.00015728,1.782302539,0.075678546,pos,ns,0.792942002,Lingo1,Lingo1_Intron,9,56689679,56689728,56689679,56689680,50,+,CGCTTGAAGCCGGAGTACATTACTGCCCTGAATGATCTGTCGGCTTCTAT,"Intron (Lingo1-206/Lingo1, intron 3 of 6)",9,56618475,56796138,177664,2,Lingo1-206,106410,Lingo1-201;Lingo1-206;Lingo1-205;Lingo1-207;Lingo1-204;Lingo1-208,Lingo1;Lingo1;Lingo1;Lingo1;Lingo1;Lingo1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,25,235402,ENSMUSG00000049556,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9987,cg16464310,0.0000645,0.0000152,4.25025962,0.0000283,gain,ns,0.000000474,0.0000258,0.018402999,0.985329198,pos,ns,0.024258837,0.007551058,3.212640894,0.0014535,pos,ns,2.837584982,-0.000582398,0.00025968,-2.242750639,0.025619325,neg,ns,0.576311766,Satb1,Satb1_Intron,17,51791075,51791124,51791075,51791076,50,+,CGATTAAACAGCTGATGGACAAATATTAAACTGGAAAATGTATAGTCATT,"Intron (Satb1-208/Satb1, intron 5 of 10)",17,51736187,51832672,96486,2,Satb1-208,41548,Satb1-208;Satb1-213;Satb1-204;Satb1-214;Satb1-203;Satb1-211;Satb1-207,Satb1;Satb1;Satb1;Satb1;Satb1;Satb1;Satb1,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,28,36,20230,ENSMUSG00000023927,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15231,cg26016354,-0.0000206,0.000011,-1.882909683,0.060648807,loss,ns,-0.000000342,0.0000186,-0.018381839,0.985346066,neg,ns,0.003744406,0.005454887,0.686431457,0.492954176,pos,ns,0.30719345,-0.000362623,0.000187593,-1.933028276,0.054143219,neg,ns,0.769903769,Atl2,Atl2_threeUTR,17,79850678,79850727,79850726,79850727,50,+,AATACTGTCTAATTTTTCTTCTTGTTATTGTTGGATGACAGTCTCTGTCG,3' UTR,17,79848390,79896123,47734,2,Atl2-201,45396,Atl2-201;Atl2-208;Atl2-202;Atl2-203;Atl2-205;Atl2-207;Atl2-204,Atl2;Atl2;Atl2;Atl2;Atl2;Atl2;Atl2,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,5,7,56298,ENSMUSG00000059811,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
18592,cg03784976,0.0000197,0.00000688,2.869094371,0.004399155,gain,ns,-0.000000215,0.0000117,-0.018363732,0.985360499,neg,ns,-0.000493223,0.003423283,-0.144078865,0.885531811,neg,ns,0.052795833,0.0000444,0.000117726,0.377566418,0.706011082,pos,ns,0.067596298,Hoxb5,Hoxb5_Exon,11,96303663,96303712,96303663,96303664,50,-,CGGACTATCAGTTGCTAAATTATGGCAGTGGCAGCTCTCTGAGCGGCTCT,Promoter (<=1kb),11,96303336,96306121,2786,1,Hoxb5-202,327,Hoxb5-202;Hoxb5-201;Hoxb6-202;Hoxb6-201,Hoxb5;Hoxb5;Hoxb6;Hoxb6,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,22,34,15413,ENSMUSG00000038700,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
7468,cg16636772,0.0000489,0.00000784,6.236947349,1.46E-09,gain,yes,-0.000000244,0.0000133,-0.018358062,0.985365018,neg,ns,-0.001244606,0.003900242,-0.319109955,0.749858052,neg,ns,0.125020941,0.000319564,0.000134129,2.382509502,0.017797665,pos,ns,0.123435101,Pou3f3,Pou3f3_Intron,1,42703902,42703951,42703950,42703951,50,+,CATTCTTGATTTCACATCCGTGTTTGTTCCTGTATCCTAAAATGCGGGCG,"Intron (Gm20646-202/Gm20646-202, intron 1 of 1)",1,42695768,42703176,7409,1,Pou3f3-201,8134,Pou3f3-202;Pou3f3-201,Pou3f3;Pou3f3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,37,18993,ENSMUSG00000045515,conserved gene and region,1,42703920,42704001,82,*,82,8,0.609756098,1.077175698,0.097560976,0.00000265,CpGisland,TRUE,U13,Hc-P
6227,cg00194417,0.00000386,0.00000423,0.912913197,0.361997622,gain,ns,-0.000000132,0.00000719,-0.01830741,0.985405394,neg,ns,0.006691554,0.002106787,3.176188721,0.001642449,pos,ns,2.784507982,-0.000216299,0.0000725,-2.985401404,0.003057595,neg,ns,0.894720655,Gm9211,Gm9211_Intergenic_downstream,7,36458294,36458343,36458294,36458295,50,-,CGCCAATAAGCATGGACATCAATTATTTTTTAATTGTATAGGAGTACAGT,Distal Intergenic,7,36234292,36235266,975,1,Gm9211-201,224051,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,12,15,668507,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
24103,cg10932870,0.00000147,0.00000542,0.271028569,0.786549437,gain,ns,-0.000000168,0.00000921,-0.018294769,0.98541547,neg,ns,-0.006074205,0.002697067,-2.252151884,0.02501218,neg,ns,1.601848459,-0.000105144,0.0000928,-1.133606428,0.257835581,neg,ns,0.772801853,Prkcb,Prkcb_Exon,7,122544734,122544783,122544734,122544735,50,+,CGATTTTAACTTCCTAATGGTGCTGGGGAAAGGCAGCTTTGGCAAGGTAT,"Exon (Prkcb-205/Prkcb, exon 9 of 18)",7,122288751,122634399,345649,1,Prkcb-205,255983,Prkcb-205;Prkcb-202;Prkcb-201,Prkcb;Prkcb;Prkcb,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,7,18751,ENSMUSG00000052889,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4912,cg00292639,0.000016,0.00000416,3.852243057,0.000142239,gain,ns,-0.000000129,0.00000706,-0.018268971,0.985436033,neg,ns,0.001498972,0.002068022,0.724833475,0.469100932,pos,ns,0.328733704,-0.0000824,0.0000711,-1.158782007,0.24743691,neg,ns,0.862648721,Dnah1,Dnah1_Exon,14,31265913,31265962,31265961,31265962,50,-,ACACACAGCAGGAAGGCAAACATCAGCTTGTGCTTCTCAAAGAGGCTGCG,"Exon (Dnah1-201/Dnah1, exon 66 of 78)",14,31260375,31323896,63522,2,Dnah1-201,57934,Dnah1-201;Dnah1-202,Dnah1;Dnah1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,110084,ENSMUSG00000019027,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
22333,cg05910942,-0.00000163,0.00000283,-0.577323519,0.56413997,loss,ns,8.63E-08,0.0000048,0.01797592,0.985669627,pos,ns,0.0000254,0.001407035,0.018052593,0.98560851,pos,ns,0.006295555,0.00000314,0.0000484,0.0649132,0.948284951,pos,ns,0.923369295,Brpf1,Brpf1_fiveUTR,6,113309807,113309856,113309855,113309856,50,+,GACAGCATGGGGGTGGACTTTGATGTGAAGACTTTCTGCCACAACTTGCG,5' UTR,6,113307137,113324857,17721,1,Brpf1-204,2670,Brpf1-204;Brpf1-209;Brpf1-203;Brpf1-202;Brpf1-201;Brpf1-210;Brpf1-208;Cpne9-201;Cpne9-205;Cpne9-204;Cpne9-206,Brpf1;Brpf1;Brpf1;Brpf1;Brpf1;Brpf1;Brpf1;Cpne9;Cpne9;Cpne9;Cpne9,0;0;0;0;0;0;0;27500;27500;27497;21303,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,16,78783,ENSMUSG00000001632,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
3810,cg23681938,0.0000402,0.00000699,5.750061605,2.14E-08,gain,yes,-0.000000213,0.0000119,-0.017919667,0.985714467,neg,ns,0.007239425,0.003480787,2.079824229,0.038363063,pos,ns,1.41608673,-0.000284885,0.000119704,-2.379910299,0.017921362,neg,ns,0.559947959,Celf4,Celf4_Exon,18,25491141,25491190,25491141,25491142,50,+,CGAAAGGGAGGAACATCTGCATCAGCTCAGCGTCCCCAAACTCCTGGGGC,"Exon (Celf4-202/Celf4, exon 11 of 13)",18,25477632,25753983,276352,2,Celf4-202,262793,Celf4-202;Celf4-201;Celf4-203;Celf4-207;Celf4-206;Celf4-208;Celf4-210,Celf4;Celf4;Celf4;Celf4;Celf4;Celf4;Celf4,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,31,59,108013,ENSMUSG00000024268,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
21775,cg02427264,0.00000843,0.00000685,1.230507859,0.219439862,gain,ns,0.000000208,0.0000116,0.017875729,0.98574949,pos,ns,-0.001785945,0.003407936,-0.52405476,0.600614928,neg,ns,0.221403878,0.0000676,0.000117199,0.577140877,0.564263179,pos,ns,0.543793308,Ric3,Ric3_Intergenic_upstream,7,109111047,109111096,109111095,109111096,50,+,ATACTAGCCTGTGCCCATTTCAAATTGTTATGCATCAACAGAACTTAACG,Distal Intergenic,7,109034312,109083331,49020,2,Ric3-201,-27716,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,4,320360,ENSMUSG00000048330,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
4338,cg00116110,-0.0000273,0.00000725,-3.771134287,0.000194595,loss,ns,0.000000217,0.0000123,0.017604911,0.985965364,pos,ns,-0.003473015,0.003609188,-0.962270581,0.336663687,neg,ns,0.472803725,0.000471695,0.00012412,3.800326852,0.000173945,pos,ns,0.077515424,Fkbp5,Fkbp5_Intron,17,28420310,28420359,28420358,28420359,50,+,TTGAAGAGCACAGAACACCCTGTTCTGAATGTGGCTGGCACATGAACTCG,"Intron (Fkbp5-201/Fkbp5, intron 5 of 10)",17,28399094,28486149,87056,2,Fkbp5-201,65790,Fkbp5-201;Fkbp5-202;Fkbp5-206;Fkbp5-209;Fkbp5-214;Fkbp5-212;Fkbp5-211;Fkbp5-203;Fkbp5-208;Fkbp5-205,Fkbp5;Fkbp5;Fkbp5;Fkbp5;Fkbp5;Fkbp5;Fkbp5;Fkbp5;Fkbp5;Fkbp5,0;0;0;0;0;-1806;-1783;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,2,14229,ENSMUSG00000024222,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U7,En-W
14008,cg21770786,-0.000013,0.00000946,-1.378891752,0.168922231,loss,ns,-0.000000282,0.0000161,-0.017530284,0.986024851,neg,ns,-0.000589374,0.004710315,-0.125124008,0.900506478,neg,ns,0.045513158,-0.0000638,0.000161987,-0.394045432,0.693818412,neg,ns,0.6080786,Gm15387,Gm15387_Intergenic_upstream,15,74194444,74194493,74194444,74194445,50,+,CGTCTTTCCCAGGGAATCTCATAATGGCCTTTTCATGTGTTGGTGATTTT,Distal Intergenic,15,74093686,74094333,648,2,Gm15387-201,-100111,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,2,100041307,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15506,cg02652690,-0.00000476,0.0000058,-0.82017479,0.412746654,loss,ns,-0.000000169,0.00000985,-0.017188099,0.986297614,neg,ns,-0.001833489,0.002885584,-0.635396067,0.525638869,neg,ns,0.279312527,-0.0000365,0.0000992,-0.367847469,0.713238,neg,ns,0.885607184,Mpdz,Mpdz_Intron,4,81415491,81415540,81415491,81415492,50,-,CGTTAGAACAATACACAATGTGGCAGAGTTAAACAGAGACATCAATTATA,"Intron (Mpdz-203/Mpdz, intron 3 of 46)",4,81278500,81442805,164306,2,Mpdz-203,27265,Mpdz-203;Mpdz-202;Mpdz-201;Mpdz-216;Mpdz-214,Mpdz;Mpdz;Mpdz;Mpdz;Mpdz,0;0;0;0;27275,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,3,17475,ENSMUSG00000028402,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
11805,cg02285327,-0.00000833,0.00000662,-1.257915333,0.209369067,loss,ns,-0.000000193,0.0000112,-0.017175391,0.986307743,neg,ns,0.005828144,0.003294865,1.7688567,0.077901082,pos,ns,1.108456508,-0.000292075,0.00011331,-2.577657645,0.010408913,neg,ns,0.872387622,Gm49856,Gm49856_Intergenic_upstream,17,60725309,60725358,60725357,60725358,50,+,CATTTCGTGCCATCAGTAATAACTATTTCAACAAAGATCTTAGGTTAACG,Distal Intergenic,17,60739233,60739578,346,1,Gm49856-201,-13875,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9706,cg25237345,0.0000652,0.00000987,6.602788808,1.75E-10,gain,yes,-0.000000288,0.0000168,-0.017153992,0.986324801,neg,ns,0.016533296,0.004913025,3.36519668,0.000861077,pos,ns,3.064958121,-0.000484951,0.000168959,-2.870239281,0.004383674,neg,ns,0.165003031,Gm7481,Gm7481_Intron,12,50121044,50121093,50121092,50121093,50,+,AAGCCACTATCACCCACTTGTGTCACCTCCCCAATGAGCAGCAAGAGCCG,"Intron (Gm40418-201/Gm40418-201, intron 1 of 2)",12,49840757,49841751,995,2,Gm7481-201,-279293,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,37,665077,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27813,cg26248120,0.0000472,0.000018,2.630814199,0.008943671,gain,ns,-0.000000523,0.0000305,-0.017141163,0.986335027,neg,ns,-0.029464937,0.008936026,-3.297319775,0.001089559,neg,ns,2.962749375,0.000802815,0.000307309,2.612399791,0.009428858,pos,ns,0.705657076,Esrrg,Esrrg_Intron,1,188030380,188030429,188030380,188030381,50,-,CGGGTATAAATCACAACAATCCTGTCTTGACAGCCAATTTCGAGAATTTG,"Intron (Esrrg-204/Esrrg, intron 3 of 3)",1,187608791,188043502,434712,1,Esrrg-204,421589,Esrrg-204;Esrrg-203;Esrrg-201;Esrrg-202,Esrrg;Esrrg;Esrrg;Esrrg,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,50,60,26381,ENSMUSG00000026610,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17726,cg26258387,0.00000277,0.00000402,0.689825014,0.490820305,gain,ns,0.000000116,0.00000683,0.016998298,0.986448908,pos,ns,0.003989336,0.002000435,1.994234545,0.047002036,pos,ns,1.327883326,-0.0000875,0.0000688,-1.271338429,0.204561334,neg,ns,0.894172609,Lrp4,Lrp4_Exon,2,91500989,91501038,91501037,91501038,50,-,CAAGACAGGTGGATCTACTGGACAGACTGGCAGACCAAGTCAATCCAGCG,"Exon (Lrp4-201/Lrp4, exon 32 of 38)",2,91457511,91513779,56269,1,Lrp4-201,43478,Lrp4-201,Lrp4,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,7,228357,ENSMUSG00000027253,mapped to different genes,2,91500982,91501141,160,*,160,10,0.56875,0.794438928,0.0625,0.00000493,CpGisland,TRUE,U11,Tr-P
4913,cg16980159,0.0000278,0.00000711,3.908746675,0.000113978,gain,ns,-0.000000204,0.0000121,-0.016863506,0.986556355,neg,ns,0.012123597,0.003541148,3.423634797,0.000700987,pos,ns,3.154290262,-0.00050178,0.00012178,-4.120385714,0.0000486,neg,ns,0.523464561,Dnah1,Dnah1_Exon,14,31265920,31265969,31265968,31265969,50,-,GCAGGAAGGCAAACATCAGCTTGTGCTTCTCAAAGAGGCTGCGGCAGACG,"Exon (Dnah1-201/Dnah1, exon 66 of 78)",14,31260375,31323896,63522,2,Dnah1-201,57927,Dnah1-201;Dnah1-202,Dnah1;Dnah1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,5,110084,ENSMUSG00000019027,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1434,cg19038076,-0.0000287,0.00000745,-3.854292561,0.000141107,loss,ns,0.000000213,0.0000127,0.016825159,0.986586922,pos,ns,-0.002636474,0.003709114,-0.710809757,0.477736572,neg,ns,0.320811511,-0.000110392,0.000127556,-0.865436232,0.387468646,neg,ns,0.865350723,Triqk,Triqk_Intergenic_upstream,4,12876057,12876106,12876105,12876106,50,-,TGTTCAATCTACTGACATTAATGGCTACCTCATTAATCATAGCATTCTCG,Distal Intergenic,4,12906838,12980873,74036,1,Triqk-201,-30781,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,11,208820,ENSMUSG00000055963,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8279,cg25805204,-0.00000054,0.000000355,-1.517882273,0.130063202,loss,ns,-1.01E-08,0.000000604,-0.016695431,0.986690332,neg,ns,0.000418781,0.000176915,2.367126187,0.018540842,pos,ns,1.731870547,-0.0000168,0.00000608,-2.754629463,0.00622307,neg,ns,0.009331824,Slf2,Slf2_fiveUTR,19,44931304,44931353,44931304,44931305,50,-,CGCCGACATGACAAGGCGCTGCATGCCCGCTAGGCCAGGTTTCCCCTCAT,Promoter (<=1kb),19,44931151,44983188,52038,1,Slf2-201,153,Slf2-201;Slf2-204;Slf2-203,Slf2;Slf2;Slf2,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,17,226151,ENSMUSG00000036097,conserved gene and region,19,44931025,44931421,397,*,397,34,0.672544081,0.793533216,0.085642317,9.01E-24,CpGisland,TRUE,U1,Pr-A
2795,cg20678942,0.00000113,0.00000184,0.613547043,0.53996461,gain,ns,5.22E-08,0.00000313,0.016689587,0.986694991,pos,ns,0.005274637,0.000916472,5.755372227,2.08E-08,pos,ns,7.682532156,-0.0000775,0.0000315,-2.458715857,0.014489844,neg,ns,0.945849677,Samd8,Samd8_threeUTR,14,21783692,21783741,21783692,21783693,50,-,CGAAGGCTCTGTAGTCTGATGGGAACTGTATTCTTGCTTCGCTGCTTTAC,3' UTR,14,21750531,21793302,42772,1,Samd8-201,33161,Samd8-201;Samd8-204;Samd8-202,Samd8;Samd8;Samd8,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,67630,ENSMUSG00000021770,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4274,cg12357722,-0.000071,0.00000605,-11.7473026,1.32E-26,loss,yes,-0.000000171,0.0000103,-0.016639003,0.986735312,neg,ns,-0.00068751,0.003010034,-0.228406038,0.819481187,neg,ns,0.086461012,-0.000471259,0.000103515,-4.552572908,0.00000762,neg,ns,0.954564574,Scube3,Scube3_Exon,17,28165969,28166018,28165969,28165970,50,+,CGGCCGACTCTCCCTCAGTCAGCTGCCCGCAGGGAACGTATTACCACGGC,"Exon (Scube3-201/Scube3, exon 16 of 22)",17,28142141,28174854,32714,1,Scube3-201,23828,Scube3-201;Scube3-207;Scube3-202;Scube3-203;Scube3-206;Scube3-205;Scube3-204,Scube3;Scube3;Scube3;Scube3;Scube3;Scube3;Scube3,0;0;0;0;7095;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,7,268935,ENSMUSG00000038677,conserved gene but different region,17,28165967,28166085,119,*,119,9,0.672268908,0.669793621,0.075630252,0.00000392,CpGisland,TRUE,U11,Tr-P
14873,cg20444731,0.00000309,0.00000298,1.03617391,0.3009286,gain,ns,-8.42E-08,0.00000507,-0.016603203,0.98676385,neg,ns,0.001832021,0.001484912,1.233757135,0.218227986,pos,ns,0.661089555,-0.0000724,0.0000511,-1.41824838,0.157122733,neg,ns,0.897574537,Phf12,Phf12_Exon,11,78029510,78029559,78029558,78029559,50,-,GCAGTTTGTCTTCAGCATCACTGAGTTTGCGACCAAACAGCCCAAAGGCG,"Exon (Phf12-201/Phf12, exon 15 of 15)",11,77982802,78030539,47738,1,Phf12-201,46708,Dhrs13-201;Dhrs13-204;Dhrs13-203;Dhrs13-202;Phf12-202;Phf12-201;Phf12-207;Phf12-206;Phf12-208;Phf12-205;Phf12-203;Phf12-204,Dhrs13;Dhrs13;Dhrs13;Dhrs13;Phf12;Phf12;Phf12;Phf12;Phf12;Phf12;Phf12;Phf12,-2721;-2790;-2793;-2800;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,14,27,268448,ENSMUSG00000037791,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19459,cg27358967,-0.00000503,0.00000886,-0.568212533,0.570302005,loss,ns,0.000000249,0.000015,0.016550179,0.986806117,pos,ns,0.003979368,0.004408962,0.902563492,0.367458362,pos,ns,0.434791865,-0.000203522,0.000151624,-1.342280896,0.180487112,neg,ns,0.723313603,Gm12685,Gm12685_Intergenic_downstream,4,99373599,99373648,99373599,99373600,50,+,CGTAATGGACAGAGGATAATAACATGTAAAATATTAACCAATGTGTAGCA,Distal Intergenic,4,99418498,99418711,214,2,Gm12685-201,45063,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,13,13,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8306,cg15155687,0.00000214,0.00000932,0.229410269,0.81870134,gain,ns,-0.000000261,0.0000158,-0.016504168,0.986842793,neg,ns,0.003838818,0.004639673,0.827389664,0.408652683,pos,ns,0.388645645,-0.000266409,0.000159558,-1.66966627,0.095994835,neg,ns,0.831236756,Zeb2,Zeb2_Exon,2,44994535,44994584,44994583,44994584,50,+,CATAAGTCACATGCATACATGCCACTCTCTGTCTTCTTGATCTTTTTGCG,"Exon (Zeb2-212/Zeb2, exon 10 of 11)",2,44983632,45117395,133764,2,Zeb2-212,122811,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,21,158,24136,ENSMUSG00000026872,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4555,cg08954309,-0.00000496,0.00000144,-3.441649874,0.00065754,loss,ns,-4.03E-08,0.00000245,-0.016463051,0.98687557,neg,ns,-0.001208131,0.000716807,-1.685432856,0.092911359,neg,ns,1.031931186,-0.000023,0.0000247,-0.931716063,0.352208325,neg,ns,0.966225661,Ntm,Ntm_Intron,9,29733575,29733624,29733623,29733624,50,-,ATTATGAATTTTTCAATAACCTTTTCTATTATTCATCCTGTGTTATTCCG,"Intron (Ntm-201/Ntm, intron 1 of 7)",9,28994750,29963129,968380,2,Ntm-201,229505,Ntm-201;Ntm-204;Ntm-210;Ntm-207,Ntm;Ntm;Ntm;Ntm,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,27,32,235106,ENSMUSG00000059974,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6828,cg05559600,-0.0000148,0.0000035,-4.230581972,0.0000307,loss,ns,-9.75E-08,0.00000594,-0.01640741,0.986919923,neg,ns,-0.001917122,0.001741373,-1.100925232,0.271783299,neg,ns,0.565777235,-0.00000414,0.0000599,-0.069173291,0.944896281,neg,ns,0.911270908,Nrg3,Nrg3_Intron,14,38665168,38665217,38665168,38665169,50,-,CGCAGGTCATTGAGTTTCAGTCAGTGGAATTTAGAGTGATAAATGTCCTG,"Intron (Nrg3-201/Nrg3, intron 3 of 9)",14,38368952,39473088,1104137,2,Nrg3-201,807871,Nrg3-201;Nrg3-202;Nrg3-203,Nrg3;Nrg3;Nrg3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,3,18183,ENSMUSG00000041014,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7180,cg26751600,-0.00000187,0.000000792,-2.366367231,0.018578204,loss,ns,-2.21E-08,0.00000135,-0.016392626,0.986931708,neg,ns,0.000305266,0.000394184,0.774426282,0.439268986,pos,ns,0.357269459,-0.0000138,0.0000136,-1.019210778,0.308897659,neg,ns,0.024723888,Jade1,Jade1_Intron,3,41564289,41564338,41564289,41564290,50,+,CGTCACCACATGTCCAAAATATTCATTGCATCAATTCAAGGGCAGTGAGA,"Intron (Jade1-201/Jade1, intron 1 of 10)",3,41555731,41616864,61134,1,Jade1-201,8558,Jade1-201;Jade1-210;Jade1-214;Jade1-202;Jade1-209;Jade1-204;Jade1-203;Jade1-211;Jade1-206,Jade1;Jade1;Jade1;Jade1;Jade1;Jade1;Jade1;Jade1;Jade1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,16,269424,ENSMUSG00000025764,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
27029,cg22467622,0.00000221,0.00000513,0.430908445,0.666834408,gain,ns,0.000000143,0.00000872,0.016375643,0.986945245,pos,ns,-0.001059403,0.002554323,-0.414749059,0.678612483,neg,ns,0.168378156,0.0000693,0.0000878,0.788807864,0.430827142,pos,ns,0.86969114,Dlgap4,Dlgap4_Intron,2,156673502,156673551,156673502,156673503,50,+,CGTTCCTCCAACCACACGGGCTGACATTTCCAGACAGACGCTGGAATCAG,"Intron (Dlgap4-205/Dlgap4, intron 2 of 12)",2,156613705,156764361,150657,1,Dlgap4-205,59797,Dlgap4-205;Dlgap4-212,Dlgap4;Dlgap4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,17,228836,ENSMUSG00000061689,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14256,cg25929890,-0.0000017,0.00000234,-0.724857109,0.469086452,loss,ns,-6.51E-08,0.00000398,-0.016371754,0.986948345,neg,ns,0.000180042,0.001164835,0.154564404,0.877265315,pos,ns,0.056869041,-0.0000418,0.0000401,-1.044208323,0.297202592,neg,ns,0.933399564,Chic2,Chic2_threeUTR,5,74999235,74999284,74999283,74999284,50,+,TCACTTGAGTGCCCTTCTTTAGTCTCCTTTCAACTGCCCACTTTATATCG,3' UTR,5,74997988,75044774,46787,2,Chic2-201,45490,Chic2-201,Chic2,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,10,74277,ENSMUSG00000029229,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16426,cg23569600,-0.00000695,0.00000362,-1.920438038,0.05571981,loss,ns,-0.000000101,0.00000615,-0.016369794,0.986949908,neg,ns,-0.000476504,0.001801123,-0.264559728,0.791524456,neg,ns,0.101535662,-0.0000544,0.0000619,-0.878997757,0.380083311,neg,ns,0.013949688,Junb,Junb_Promoter,8,84978837,84978886,84978885,84978886,50,+,AGGAGGCGGCTCGCGTCACTGTCAGGAAGCGCGTGTCCTTGTAAACAGCG,Promoter (<=1kb),8,84976910,84978718,1809,2,Junb-201,-119,Junb-201;Prdx2-203;Prdx2-201;Prdx2-202;Prdx2-208;Prdx2-205,Junb;Prdx2;Prdx2;Prdx2;Prdx2;Prdx2,-119;9250;9226;9070;8598;7381,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,1,16477,ENSMUSG00000052837,mapped to different genes,8,84977898,84978911,1014,*,1014,93,0.66765286,0.823051948,0.091715976,8.61E-67,CpGisland,TRUE,U6,En-Sp
21278,cg05983651,-0.000000163,0.0000014,-0.116208755,0.907562343,loss,ns,-3.88E-08,0.00000238,-0.01630376,0.987002546,neg,ns,0.000776805,0.000697623,1.113502686,0.266355229,pos,ns,0.574538773,-0.0000481,0.000024,-2.00500445,0.045831679,neg,ns,0.969210806,Bptf,Bptf_Intron,11,107071464,107071513,107071464,107071465,50,+,CGCTCTCAATGAAGAAAGCAGAAAAGTGCAGAGTAATCCTATAAATCCAT,"Intron (Bptf-201/Bptf, intron 11 of 27)",11,107033081,107131922,98842,2,Bptf-201,60409,Bptf-201;Bptf-202;Bptf-203;Bptf-207,Bptf;Bptf;Bptf;Bptf,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,4,207165,ENSMUSG00000040481,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
1736,cg26691389,-0.00000581,0.000012,-0.48555999,0.627622164,loss,ns,-0.000000331,0.0000203,-0.016291043,0.987012683,neg,ns,-0.006110747,0.005956975,-1.025813731,0.305779167,neg,ns,0.514592107,0.000106408,0.00020486,0.519417872,0.603840019,pos,ns,0.243222979,Gm5513,Gm5513_Intergenic_downstream,19,14891137,14891186,14891185,14891186,50,+,GCTATAAATACAAGCGAAAAGCTTACCGAGTGCAATAAAATACAGACACG,Distal Intergenic,19,14959549,14960766,1218,2,Gm5513-201,69580,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,22,433225,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
13782,cg27070413,-0.00000677,0.00000184,-3.672729295,0.000282574,loss,ns,5.09E-08,0.00000313,0.016259102,0.987038144,pos,ns,-0.001057885,0.000917452,-1.15306764,0.249770926,neg,ns,0.602458116,-0.0000323,0.0000316,-1.022955218,0.307126623,neg,ns,0.039536184,Ube2g1,Ube2g1_Intron,11,72608431,72608480,72608479,72608480,50,-,TTTAGGGGGTTGGCTCCTACTCTGCTAGGACTGTGTGCGCGGAGCATGCG,"Intron (Ube2g1-201/Ube2g1, intron 1 of 5)",11,72607283,72686481,79199,1,Ube2g1-201,1148,Ube2g1-201;Ube2g1-203;Ube2g1-202,Ube2g1;Ube2g1;Ube2g1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,5,67128,ENSMUSG00000020794,conserved gene and region,11,72608470,72608638,169,*,169,13,0.627218935,0.83219697,0.076923077,8.77E-09,CpGisland,TRUE,NA,NRS
16334,cg03960951,0.0000405,0.00000306,13.25555522,4.44E-32,gain,yes,-8.41E-08,0.00000519,-0.016196153,0.987088323,neg,ns,0.001811763,0.001520826,1.191301608,0.234446499,pos,ns,0.629956249,-0.0000398,0.0000523,-0.760617732,0.44746356,neg,ns,0.058774711,Rfx4,Rfx4_Promoter,10,84756000,84756049,84756000,84756001,50,-,CGGCTTTTCTTATTCAAAACAGGCCCACAATGGGCTTCACAGTGCGCCTC,Promoter (<=1kb),10,84756062,84906144,150083,1,Rfx4-202,-62,Rfx4-202,Rfx4,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,3,13,71137,ENSMUSG00000020037,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
16436,cg09190887,-0.00000852,0.00000299,-2.846693921,0.004712238,loss,ns,8.23E-08,0.00000509,0.016186973,0.987095641,pos,ns,0.000190132,0.001489789,0.127623672,0.898529544,pos,ns,0.046467639,-0.00000671,0.0000512,-0.131000647,0.895859768,neg,ns,0.938428802,Cntln,Cntln_Intron,4,84996265,84996314,84996265,84996266,50,+,CGAGTCACAGAGAAACCTTTAGCGGTAGCACTGTGGTAATTCCGCTTGTT,"Intron (Cntln-201/Cntln, intron 9 of 25)",4,84884309,85131921,247613,1,Cntln-201,111956,Cntln-201;Cntln-204,Cntln;Cntln,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,23,25,338349,ENSMUSG00000038070,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16016,cg21742866,0.00000184,0.00000175,1.05170615,0.293753501,gain,ns,-0.000000048,0.00000297,-0.016154192,0.987121771,neg,ns,-0.000515408,0.000869851,-0.592524793,0.553931173,neg,ns,0.256544194,0.0000472,0.0000299,1.578909258,0.115376684,pos,ns,0.95865238,Bnc2,Bnc2_Intergenic_downstream,4,84211563,84211612,84211563,84211564,50,-,CGCCAGCCAGATGTGCTCTTGACTTCTGAACAGGAGAAAGGTTTCTTTGA,Distal Intergenic,4,84275380,84291757,16378,2,Bnc2-218,80194,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,6,91,242509,ENSMUSG00000028487,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8425,cg23267345,0.000000694,0.00000468,0.148363797,0.882152129,gain,ns,-0.000000128,0.00000794,-0.016131585,0.987139792,neg,ns,-0.00633752,0.002327539,-2.722842027,0.006838828,neg,ns,2.165018293,0.000129154,0.00008,1.613544036,0.107643799,pos,ns,0.087732645,Zeb2,Zeb2_fiveUTR,2,45111037,45111086,45111037,45111038,50,+,CGCTGCATTTTTTCAGTTGAAACTGTCAAAACTTGGAGAAGGGGGACCTC,Promoter (<=1kb),2,45008598,45111076,102479,2,Zeb2-208,0,Zeb2-212;Zeb2-213;Zeb2-201;Zeb2-202;Zeb2-215;Zeb2-214;Zeb2-203;Zeb2-221;Zeb2-220;Zeb2-216;Zeb2-222;Zeb2-208;Zeb2-228;Zeb2-226;Zeb2-209;Zeb2-224;Zeb2-207;Zeb2-219;Zeb2-211;Zeb2-210;Zeb2-205;Zeb2-223;Zeb2-217;Zeb2-225;Zeb2-204;Zeb2-206,Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2;Zeb2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;-961;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,15,158,24136,ENSMUSG00000026872,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
21080,cg03956141,-0.0000339,0.00000412,-8.216038803,5.78E-15,loss,yes,-0.000000113,0.000007,-0.016104333,0.987161516,neg,ns,-0.000438682,0.002051665,-0.213817563,0.83082989,neg,ns,0.080487888,-0.00007,0.0000706,-0.991522283,0.322203902,neg,ns,0.938814461,Dusp7,Dusp7_Exon,9,106373792,106373841,106373792,106373793,50,-,CGCCCAACTTCAACTTCATGGGGCAGCTGCTGGACTTTGAGCGGACGCTG,"Exon (Dusp7-201/Dusp7, exon 3 of 3)",9,106368632,106375724,7093,1,Dusp7-201,5160,Dusp7-201;Dusp7-202;Dusp7-203;Dusp7-204,Dusp7;Dusp7;Dusp7;Dusp7,0;0;0;-778,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,4,235584,ENSMUSG00000053716,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
3353,cg23906704,-0.0000466,0.0000139,-3.367430076,0.000854379,loss,ns,-0.000000378,0.0000235,-0.016072597,0.987186814,neg,ns,0.014341187,0.006894261,2.080163116,0.038331753,pos,ns,1.416441314,-0.000401542,0.000237093,-1.693604018,0.091345037,neg,ns,0.651424652,Srrm2,Srrm2_Exon,17,23807105,23807154,23807153,23807154,50,-,CTGGTGAAGCGGCCTAATCCTGACATCCTGGACCACGAGCGCAAGCGGCG,"Exon (Srrm2-206/Srrm2, exon 3 of 5)",17,23790662,23808518,17857,1,Srrm2-206,16443,Srrm2-206;Srrm2-210;Srrm2-201;Srrm2-212;Srrm2-211;Srrm2-208;Srrm2-203;Srrm2-207,Srrm2;Srrm2;Srrm2;Srrm2;Srrm2;Srrm2;Srrm2;Srrm2,0;0;0;0;0;0;0;-4746,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,9,13,75956,ENSMUSG00000039218,conserved gene and region,17,23806919,23807174,256,*,256,25,0.6953125,0.810536981,0.09765625,4.40E-19,CpGisland,TRUE,NA,NRS
22387,cg17332781,-0.00000634,0.00000226,-2.802356455,0.005392396,loss,ns,-6.17E-08,0.00000384,-0.016040038,0.987212768,neg,ns,-0.000919606,0.001126333,-0.816460228,0.414863914,neg,ns,0.382094339,-0.0000183,0.0000387,-0.472401393,0.636972696,neg,ns,0.958189038,Sdk2,Sdk2_Intron,11,113956958,113957007,113956958,113956959,50,+,CGCTTTGTGGCGTGTAACAAAGACTGCCGAGCAGAAAATTGGAGTTCAAT,"Intron (Sdk2-201/Sdk2, intron 1 of 44)",11,113776374,114066218,289845,2,Sdk2-201,109211,Sdk2-201;Sdk2-203;Sdk2-205;Sdk2-204,Sdk2;Sdk2;Sdk2;Sdk2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,11,237979,ENSMUSG00000041592,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10999,cg05597900,-0.00000263,0.00000601,-0.438258474,0.661504162,loss,ns,-0.000000163,0.0000102,-0.015956689,0.987279209,neg,ns,0.003986443,0.002990861,1.332874852,0.183551643,pos,ns,0.736241724,-0.000224732,0.000102855,-2.184928355,0.029642587,neg,ns,0.893644944,Gm28900,Gm28900_Intergenic_upstream,1,56131148,56131197,56131196,56131197,50,-,ACAGCTGTTACTAGTTATTTAGAAGTCTAATTTGAGCAGAATGTGTCACG,Distal Intergenic,1,56451407,56451562,156,1,Gm28900-201,-320259,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,12,102635907,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12326,cg04951768,-0.00000711,0.00000427,-1.664478374,0.097027246,loss,ns,0.000000116,0.00000725,0.015949776,0.98728472,pos,ns,0.00027377,0.002125189,0.128821339,0.897582556,pos,ns,0.046925596,-0.0000275,0.0000731,-0.376526401,0.706783171,neg,ns,0.942418094,Fign,Fign_Intergenic_downstream,2,63963214,63963263,63963214,63963215,50,-,CGCTTGAGAGATAAAACTTTAAGTGTTGCTCCCAATTAGCACAACAGTGA,Distal Intergenic,2,63980447,64097988,117542,2,Fign-202,134774,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,28,84,60344,ENSMUSG00000075324,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18816,cg27000043,-0.0000129,0.00000375,-3.448064233,0.000642687,loss,ns,-0.000000101,0.00000637,-0.015887291,0.987334529,neg,ns,-0.002188217,0.001865692,-1.172872025,0.241747574,neg,ns,0.616637875,0.0000214,0.0000642,0.333114047,0.739273374,pos,ns,0.055960673,Rsf1,Rsf1_Exon,7,97581024,97581073,97581072,97581073,50,-,TCTATTATTGGTGTTCGCAAGTGGTGCTCCTTCCACATAAGGCCACCGCG,"Exon (Rsf1-207/Rsf1, exon 1 of 1)",7,97579889,97582973,3085,1,Rsf1-207,1135,Aamdc-206;Aamdc-202;Aamdc-204;Aamdc-213;Aamdc-208;Aamdc-203;Aamdc-209;Aamdc-207;Aamdc-212;Aamdc-210;Aamdc-205;Aamdc-211;Aamdc-215;Rsf1-207;Rsf1-206;Rsf1-201;Rsf1-203,Aamdc;Aamdc;Aamdc;Aamdc;Aamdc;Aamdc;Aamdc;Aamdc;Aamdc;Aamdc;Aamdc;Aamdc;Aamdc;Rsf1;Rsf1;Rsf1;Rsf1,-1527;-1545;-1626;-1528;-1538;-1527;-1583;-1542;-1582;-1550;-1605;-1642;-2797;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,6,233532,ENSMUSG00000035623,conserved gene but different region,7,97581018,97581232,215,*,215,13,0.572093023,0.747326203,0.060465116,0.000000155,CpGisland,TRUE,U1,Pr-A
3179,cg11206230,-0.000000462,0.000000384,-1.200854614,0.230724348,loss,ns,-1.04E-08,0.000000653,-0.01587925,0.987340939,neg,ns,0.000221074,0.000191365,1.155248979,0.248878147,pos,ns,0.604013236,-0.0000127,0.00000658,-1.934179096,0.054000994,neg,ns,0.008300739,Klf9,Klf9_Exon,19,23142045,23142094,23142045,23142046,50,-,CGACGTGACCACCGAATCTGGGTCGAGTCCTTCCCACAGCCCGGAGGAGA,Promoter (<=1kb),19,23141226,23168134,26909,1,Klf9-201,819,Klf9-201;Klf9-202,Klf9;Klf9,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,13,16601,ENSMUSG00000033863,conserved gene and region,19,23141183,23142172,990,*,990,120,0.684848485,1.033789605,0.121212121,5.63E-102,CpGisland,TRUE,U1,Pr-A
25137,cg02800363,-0.0000354,0.0000077,-4.594084208,0.00000633,loss,ns,-0.000000207,0.0000131,-0.015789764,0.987412272,neg,ns,-0.012291507,0.003831896,-3.207682629,0.001477961,neg,ns,2.830336956,0.000336182,0.000131779,2.551113874,0.01121805,pos,ns,0.643342724,Ahdc1,Ahdc1_Intron,4,133052204,133052253,133052252,133052253,50,+,GAACAAGGAGGCCAGAGCAGCTAATGGGAAACATGTGATTCTGCCTTGCG,"Intron (Ahdc1-210/Ahdc1, intron 2 of 3)",4,133011260,133060820,49561,1,Ahdc1-210,40944,Ahdc1-210;Ahdc1-203;Ahdc1-204;Ahdc1-205;Ahdc1-207;Ahdc1-211;Ahdc1-209;Ahdc1-206;Ahdc1-201;Ahdc1-202,Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,35,49,230793,ENSMUSG00000037692,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
22617,cg06209665,0.0000062,0.0000172,0.360082784,0.719030425,gain,ns,-0.00000046,0.0000293,-0.01572436,0.987464408,neg,ns,0.016481594,0.008573992,1.922277846,0.055487053,pos,ns,1.255808342,-0.000522669,0.000294859,-1.772608838,0.077275564,neg,ns,0.357997061,Msi1,Msi1_Exon,5,115436550,115436599,115436598,115436599,50,+,ACTAATCTGATCCAGCAGCTGTGATTGGAGGCCGCCTGCCCCCGGGGCCG,"Exon (4930430O22Rik-202/4930430O22Rik-202, exon 1 of 1)",5,115429599,115455698,26100,1,Msi1-208,6951,Msi1-208;Msi1-209;Msi1-201;Msi1-203;Msi1-206;Msi1-205;Msi1-207;Msi1-204;Msi1-202,Msi1;Msi1;Msi1;Msi1;Msi1;Msi1;Msi1;Msi1;Msi1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,14,17690,ENSMUSG00000054256,conserved gene but different region,5,115436495,115436692,198,*,198,21,0.666666667,0.956521739,0.106060606,6.93E-17,CpGisland,TRUE,NA,NRS
27728,cg25306428,-0.00000197,0.00000142,-1.381077888,0.168249756,loss,ns,0.000000038,0.00000242,0.015714441,0.987472315,pos,ns,0.000471998,0.000708717,0.665989566,0.505913042,pos,ns,0.295924124,-0.0000255,0.0000244,-1.045110059,0.296786349,neg,ns,0.056889437,Lsm14b,Lsm14b_Exon,2,180025204,180025253,180025252,180025253,50,+,ACCCCGTATCTGGGCAGCAAGATCAGCCTCATCTCCAAGGCGCAGATCCG,Promoter (<=1kb),2,180024987,180035461,10475,1,Lsm14b-201,217,Lsm14b-201;Lsm14b-202;Lsm14b-203,Lsm14b;Lsm14b;Lsm14b,0;-1145;-2656,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,2,241846,ENSMUSG00000039108,conserved gene and region,2,180024595,180025647,1053,*,1053,138,0.743589744,0.949566104,0.131054131,1.33E-122,CpGisland,TRUE,U1,Pr-A
3960,cg16849682,-0.0000133,0.00000445,-2.985599817,0.003055669,loss,ns,-0.000000118,0.00000756,-0.015650926,0.987522945,neg,ns,0.000245384,0.002214136,0.110825921,0.911826106,pos,ns,0.040087978,-0.0000513,0.0000761,-0.674309763,0.500616921,neg,ns,0.93137539,Gm9321,Gm9321_Intergenic_upstream,12,25939031,25939080,25939031,25939032,50,+,CGCTCTGCCCACTCATGCAGAGAACCCAGCTGCTGGGACAGATGTTGCTC,Distal Intergenic,12,25819764,25820541,778,2,Gm9321-201,-118490,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,2,4,668726,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7831,cg08900073,-0.00000385,0.00000126,-3.069451306,0.002334116,loss,ns,3.32E-08,0.00000213,0.015568474,0.987588671,pos,ns,0.000763052,0.000624674,1.221520784,0.222817016,pos,ns,0.652051646,-0.000000847,0.0000215,-0.039441166,0.968564048,neg,ns,0.050870212,Bcl9l,Bcl9l_Promoter,9,44482719,44482768,44482719,44482720,50,-,CGAGATGGGGGAGCTCTTATTTTGACAGGGGCCTCTCCGGGCTCTGGTAT,Promoter (<=1kb),9,44482825,44510422,27598,1,Bcl9l-206,-106,Bcl9l-206;Bcl9l-202;Bcl9l-203,Bcl9l;Bcl9l;Bcl9l,0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,9,80288,ENSMUSG00000063382,mapped to different genes,9,44482610,44482758,149,*,149,11,0.691275168,0.625095347,0.073825503,0.000000261,CpGisland,TRUE,U2,Pr-W
2046,cg00551264,-0.00000332,0.00000119,-2.786826208,0.005650944,loss,ns,3.13E-08,0.00000203,0.015467095,0.987669485,pos,ns,0.000331549,0.000593756,0.55839327,0.576978947,pos,ns,0.238840033,-0.0000306,0.0000204,-1.498679387,0.134974431,neg,ns,0.03251047,Cited2,Cited2_Promoter,10,17722318,17722367,17722318,17722319,50,-,CGCTGAGTTTGTTTACAGAGCAGAGACGCCTCAGCTCGGATGCCAAAGCT,Promoter (<=1kb),10,17723218,17725674,2457,1,Cited2-201,-900,Cited2-201;Cited2-203;Cited2-202,Cited2;Cited2;Cited2,0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,4,11,17684,ENSMUSG00000039910,conserved gene and region,10,17722311,17722562,252,*,252,22,0.638888889,0.855555556,0.087301587,9.52E-16,CpGisland,TRUE,U1,Pr-A
25716,cg17172158,-0.0000097,0.00000395,-2.453764434,0.014686926,loss,ns,-0.000000104,0.00000671,-0.015441788,0.987689659,neg,ns,-0.003791262,0.001966522,-1.927902616,0.054780498,neg,ns,1.261374027,-0.000035,0.0000676,-0.517389932,0.605252964,neg,ns,0.941212656,Igbp1b,Igbp1b_Intergenic_upstream,6,138674437,138674486,138674437,138674438,50,+,CGATTTCTTGATAAGAAATGAAATGAGCCGTTGTCCTTCAGGATATCATA,Distal Intergenic,6,138657089,138658544,1456,2,Igbp1b-201,-15893,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,5,50540,ENSMUSG00000046717,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17299,cg07373516,-0.0000904,0.0000131,-6.912241463,2.72E-11,loss,yes,-0.000000343,0.0000222,-0.015429385,0.987699546,neg,ns,-0.010730599,0.006510861,-1.648107658,0.100343682,neg,ns,0.998509968,-0.0000884,0.000223908,-0.394875984,0.693205966,neg,ns,0.668766305,Ankfn1,Ankfn1_Intron,11,89507082,89507131,89507130,89507131,50,+,CTTGCTGGGAAGGTCCTAAATATAGGCATTGACAGTTTAAAACAAATTCG,"Intron (Ankfn1-208/Ankfn1, intron 7 of 21)",11,89391238,89841266,450029,2,Ankfn1-208,334135,Ankfn1-208;Ankfn1-206;Ankfn1-202;Ankfn1-203,Ankfn1;Ankfn1;Ankfn1;Ankfn1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,15,382543,ENSMUSG00000047773,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20190,cg08522676,0.0000466,0.000007,6.653279612,1.30E-10,gain,yes,0.000000183,0.0000119,0.015411708,0.987713637,pos,ns,0.005629713,0.003482386,1.616625207,0.106976334,pos,ns,0.970712287,-0.0000268,0.000119759,-0.224073501,0.822847716,neg,ns,0.08450877,Hoxc12,Hoxc12_Promoter,15,102931888,102931937,102931936,102931937,50,-,GCCTCTGTTTACACACAGAGGAGGTGTCGTCTCCAGTCTAGACAAGGGCG,Promoter (4-5kb),15,102936757,102938609,1853,1,Hoxc12-201,-4869,Hoxc12-201;Hoxc13-201,Hoxc12;Hoxc13,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,6,15421,ENSMUSG00000050328,conserved gene and region,15,102931859,102932082,224,*,224,16,0.647321429,0.714513557,0.071428571,3.20E-10,CpGisland,TRUE,U13,Hc-P
13641,cg07800749,-0.00000258,0.000000875,-2.947769172,0.003443832,loss,ns,2.29E-08,0.00000149,0.015397653,0.987724841,pos,ns,0.000630567,0.000435704,1.447237203,0.148840962,pos,ns,0.827277532,-0.000035,0.000015,-2.334056688,0.020231424,neg,ns,0.973426267,Fn1,Fn1_Exon,1,71613965,71614014,71613965,71613966,50,-,CGGGGTCCACCTCAGGCCGATGCTTGAATCGGTTATATCAACAAAGCTTA,"Exon (Fn1-201/Fn1, exon 25 of 46)",1,71585520,71653172,67653,2,Fn1-214,39158,Fn1-214;Fn1-211;Fn1-213;Fn1-216;Fn1-217;Fn1-201;Fn1-203;Fn1-202;Fn1-215,Fn1;Fn1;Fn1;Fn1;Fn1;Fn1;Fn1;Fn1;Fn1,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,5,14268,ENSMUSG00000026193,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25143,cg14452141,0.00000996,0.00000411,2.425781655,0.015845983,gain,ns,-0.000000106,0.00000698,-0.015177311,0.987900486,neg,ns,-0.001984023,0.002043934,-0.970688233,0.332460304,neg,ns,0.478260203,-0.0000274,0.0000703,-0.389661092,0.697054734,neg,ns,0.82107715,Ahdc1,Ahdc1_Exon,4,133066007,133066056,133066007,133066008,50,-,CGTGGCCCTGCTGCAGCCGCTGCTGGCTATGGCTGCCCACTCCTTAGTGA,"Exon (Ahdc1-203/Ahdc1, exon 6 of 7)",4,133011506,133077863,66358,1,Ahdc1-203,54501,Ahdc1-203;Ahdc1-204;Ahdc1-205;Ahdc1-211;Ahdc1-206;Ahdc1-201;Ahdc1-202;Ahdc1-208,Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1;Ahdc1,0;0;0;0;0;0;0;-193,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,49,230793,ENSMUSG00000037692,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2825,cg13590730,-0.0000661,0.0000101,-6.516530181,2.91E-10,loss,yes,0.00000026,0.0000172,0.01510877,0.987955123,pos,ns,-0.01974022,0.005047041,-3.911246252,0.00011286,neg,ns,3.947461666,0.000517478,0.000173567,2.981423851,0.003096456,pos,ns,0.815325035,Comtd1,Comtd1_Intergenic_upstream,14,21904520,21904569,21904520,21904521,50,+,CGAACTGCGCAGATGGAAATTTCGAGCAATGAGAAAGATTAAAGTGAAAC,Distal Intergenic,14,21845855,21848977,3123,2,Comtd1-202,-55543,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,13,69156,ENSMUSG00000021773,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
804,cg22678587,-0.0000145,0.00000815,-1.785286648,0.075192404,loss,ns,-0.000000209,0.0000138,-0.015085353,0.98797379,neg,ns,0.00661872,0.004055696,1.631956815,0.103703951,pos,ns,0.984204697,-0.0000919,0.000139475,-0.658928822,0.510430608,neg,ns,0.117362513,Chd7,Chd7_Intron,4,8799639,8799688,8799687,8799688,50,+,CTTTAGTCAGTGGCATCCAGCCAAAAGAGCAGGTGCTGGTCATGTGACCG,"Intron (Chd7-201/Chd7, intron 3 of 37)",4,8690921,8866810,175890,1,Chd7-201,108718,Chd7-201;Chd7-202;Chd7-206,Chd7;Chd7;Chd7,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,16,320790,ENSMUSG00000041235,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4031,cg12646064,-0.00000133,0.00000682,-0.194634452,0.845806621,loss,ns,-0.000000175,0.0000116,-0.015081822,0.987976605,neg,ns,-0.000785139,0.003392455,-0.231436793,0.81712817,neg,ns,0.087709817,-0.0000389,0.000116666,-0.333077846,0.739300672,neg,ns,0.882807894,Gm18089,Gm18089_Intergenic_upstream,18,26572833,26572882,26572833,26572834,50,-,CGAAGAGGGTTAAATATTTAAACAAGCTATGTATTGAAATACATTTTTAA,Distal Intergenic,18,27008674,27009328,655,1,Gm18089-201,-435841,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,5,100416384,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2620,cg03076881,-0.00000767,0.00000603,-1.271213362,0.204605753,loss,ns,-0.000000153,0.0000102,-0.014937573,0.988091593,neg,ns,0.001005502,0.003001091,0.335045432,0.737817414,pos,ns,0.132051099,-0.00000693,0.000103207,-0.067161161,0.946496699,neg,ns,0.930989936,Zswim8,Zswim8_Exon,14,20722864,20722913,20722912,20722913,50,+,CCAAGGGGGTGCTGAGCCCGTTTGTGCTGCAGGAGATCGTCATGGAGACG,"Exon (Zswim8-201/Zswim8, exon 25 of 26)",14,20707552,20723619,16068,1,Zswim8-201,15312,Ndst2-202;Ndst2-205;Ndst2-201;Ndst2-204;Ndst2-207;Zswim8-201;Zswim8-208;Zswim8-204;Zswim8-203;Zswim8-209;Zswim8-207;Zswim8-202;Zswim8-210;Zswim8-214,Ndst2;Ndst2;Ndst2;Ndst2;Ndst2;Zswim8;Zswim8;Zswim8;Zswim8;Zswim8;Zswim8;Zswim8;Zswim8;Zswim8,0;0;0;0;0;0;0;0;0;0;4263;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,13,14,268721,ENSMUSG00000021819,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
12424,cg22822344,-0.0000242,0.00000316,-7.653251171,2.50E-13,loss,yes,8.01E-08,0.00000538,0.01490498,0.988117574,pos,ns,-0.003615233,0.001574791,-2.295691043,0.022360802,neg,ns,1.650512625,0.0000971,0.0000542,1.792858666,0.073970334,pos,ns,0.926285506,Fign,Fign_Intergenic_upstream,2,64172386,64172435,64172386,64172387,50,+,CGCTGTTTGATGATGTGTAGCAAGTCCCTTTATGGACTGAGGCTAACATC,Distal Intergenic,2,63977337,64098038,120702,2,Fign-201,-74348,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,4,84,60344,ENSMUSG00000075324,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7014,cg24534944,0.0000102,0.0000101,1.007543049,0.31445966,gain,ns,0.000000255,0.0000172,0.014797854,0.98820297,pos,ns,-0.001551835,0.005045971,-0.307539398,0.75863935,neg,ns,0.119964635,-0.00027954,0.000173531,-1.610897379,0.108219778,neg,ns,0.778630879,Gm2810,Gm2810_Intergenic_downstream,5,40573068,40573117,40573116,40573117,50,-,TTGTGGAGAAATCTCTCACCTTTATGATCTCCTTCATTTCTGCCTAATCG,Distal Intergenic,5,40328438,40329427,990,1,Gm2810-201,244679,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,2,100040502,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18110,cg17638929,-0.000032,0.00000579,-5.521156458,7.13E-08,loss,yes,0.000000145,0.00000983,0.014751291,0.988240088,pos,ns,-0.006616809,0.002880877,-2.29680399,0.022296375,neg,ns,1.651765738,0.0000457,0.0000991,0.461738632,0.644592612,pos,ns,0.92742406,Mbtd1,Mbtd1_Exon,11,93908894,93908943,93908942,93908943,50,+,ACTCGTCAAACTCCAAGAAGGCAAGCATTTTGGCCAGACTTCAGGTAACG,"Exon (Mbtd1-205/Mbtd1, exon 3 of 16)",11,93885852,93946985,61134,1,Mbtd1-205,23042,Mbtd1-205;Mbtd1-203;Mbtd1-210;Mbtd1-207;Mbtd1-211;Mbtd1-202;Mbtd1-206;Mbtd1-201;Mbtd1-204;Mbtd1-208;Mbtd1-212,Mbtd1;Mbtd1;Mbtd1;Mbtd1;Mbtd1;Mbtd1;Mbtd1;Mbtd1;Mbtd1;Mbtd1;Mbtd1,0;0;0;0;0;0;0;0;0;-1044;-3471,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,7,103537,ENSMUSG00000059474,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
25714,cg24946611,-0.0000417,0.0000175,-2.377325368,0.01804513,loss,ns,-0.000000438,0.0000298,-0.014689484,0.988289358,neg,ns,-0.004907866,0.008734558,-0.56189063,0.574596556,neg,ns,0.240636981,-0.000389164,0.000300381,-1.295568604,0.196088024,neg,ns,0.773813176,Lmo3,Lmo3_Intron,6,138580564,138580613,138580564,138580565,50,+,CGAACAGCAGCCATCTCCAGATGATCCCTGCTGCATCCAATTTCTGCCAA,"Intron (Lmo3-204/Lmo3, intron 1 of 4)",6,138362918,138581968,219051,2,Lmo3-204,1355,Lmo3-204,Lmo3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,38,109593,ENSMUSG00000030226,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14160,cg21235151,0.000054,0.00000572,9.428359869,1.01E-18,gain,yes,-0.000000142,0.00000973,-0.014637767,0.988330585,neg,ns,0.001144467,0.002849244,0.401673791,0.688200884,pos,ns,0.162284774,0.000177852,0.000098,1.81509289,0.070475882,pos,ns,0.123214392,Hoxd3,Hoxd3_Promoter,2,74711829,74711878,74711877,74711878,50,-,TTATGACCTATTTGCGGTCGTCATTGGCTGCGGCTGGTCATGTGCAGGCG,Promoter (<=1kb),2,74711927,74748271,36345,1,Hoxd3-203,-98,Hoxd3-203;Hoxd4-203;Hoxd8-201;Hoxd8-202,Hoxd3;Hoxd4;Hoxd8;Hoxd8,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,7,24,15434,ENSMUSG00000079277,mapped to different genes,2,74711843,74711929,87,*,87,9,0.632183908,1.044,0.103448276,0.000000274,CpGisland,TRUE,U3,Pr-B
14746,cg06559544,-0.0000151,0.00000649,-2.32558286,0.020685803,loss,ns,-0.000000161,0.000011,-0.014576216,0.98837965,neg,ns,0.000489542,0.003231112,0.151508924,0.87967282,pos,ns,0.055678826,-0.000283266,0.000111118,-2.549247273,0.011277008,neg,ns,0.641107698,Pea15b,Pea15b_Promoter,5,77515076,77515125,77515124,77515125,50,-,TACTGGATCTCCTCTGGGCAATGAAGCTGCCTCCTTTTTCTCCTCTCTCG,Promoter (3-4kb),5,77511194,77511748,555,2,Pea15b-202,-3377,Pea15b-201;Pea15b-202,Pea15b;Pea15b,-3512;-3328,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,3,231332,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8987,cg05761355,-0.0000176,0.00000506,-3.478101855,0.000577215,loss,ns,-0.000000125,0.0000086,-0.014555459,0.988396197,neg,ns,-0.000126433,0.002519023,-0.050191422,0.96000217,neg,ns,0.017727785,0.000000908,0.0000866,0.010485996,0.991640284,pos,ns,0.93834412,Nans,Nans_Exon,4,46500082,46500131,46500130,46500131,50,+,CTCCAGTGGGATGCAGTCAATGGACACCATGAAGCAAGTTTATCAGATCG,"Exon (Nans-201/Nans, exon 4 of 6)",4,46489248,46503632,14385,1,Nans-201,10834,Nans-201;Nans-202;Nans-204;Nans-203;Trim14-206;Trim14-203,Nans;Nans;Nans;Nans;Trim14;Trim14,0;10763;10708;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,94181,ENSMUSG00000028334,conserved gene and region,4,46500130,46500248,119,*,119,10,0.62184874,0.923913044,0.084033613,0.000000335,CpGisland,TRUE,U10,Tr-S
19313,cg16820163,-0.0000325,0.00000798,-4.06715248,0.0000604,loss,ns,0.000000195,0.0000136,0.014384398,0.98853256,pos,ns,-0.001487448,0.00397242,-0.374443687,0.708330249,neg,ns,0.149764211,-0.0000364,0.000136611,-0.266281754,0.790199247,neg,ns,0.769357892,Rara,Rara_Intron,11,98969271,98969320,98969271,98969272,50,+,CGGCTGCTCTGTGCCCCGGAGCTGAGCAGCTGCCATTTCAATAGAATTAA,"Intron (Rara-203/Rara, intron 4 of 8)",11,98927818,98974162,46345,1,Rara-203,41453,Rara-203;Rara-204;Rara-201;Rara-207;Rara-202,Rara;Rara;Rara;Rara;Rara,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,12,19401,ENSMUSG00000037992,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U12,Tr-I
1889,cg15188722,-0.00000757,0.00000631,-1.200586572,0.230828207,loss,ns,0.000000154,0.0000107,0.014370199,0.988543878,pos,ns,0.000600569,0.003138742,0.191340717,0.848383922,pos,ns,0.07140757,-0.0000192,0.000107941,-0.17761889,0.859138291,neg,ns,0.862487725,Fat3,Fat3_Intron,9,16024159,16024208,16024159,16024160,50,-,CGCTTAAACAAGGTGTGCTTCCTCAGAGCCAGTAACAGAACATGCAAAGC,"Intron (Fat3-205/Fat3, intron 6 of 25)",9,15910189,16501285,591097,2,Fat3-205,477077,Fat3-205;Fat3-201,Fat3;Fat3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,4,270120,ENSMUSG00000074505,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22326,cg25405123,0.00000674,0.00000191,3.534896383,0.000470133,gain,ns,4.65E-08,0.00000324,0.014366582,0.988546761,pos,ns,0.001483188,0.000948595,1.563561808,0.118940738,pos,ns,0.924669371,-0.0000155,0.0000326,-0.474078897,0.635777381,neg,ns,0.033867704,Ryr3,Ryr3_Promoter,2,113217172,113217221,113217172,113217173,50,+,CGACCATATAGGGAGCTGGGCTAACACTCCACTGCACTGCAGAGCGCCAA,Promoter (<=1kb),2,112996535,113217096,220562,2,Ryr3-203,-76,Ryr3-210;Ryr3-211;Ryr3-201;Ryr3-204;Ryr3-207;Ryr3-208;Ryr3-203;Ryr3-209,Ryr3;Ryr3;Ryr3;Ryr3;Ryr3;Ryr3;Ryr3;Ryr3,0;0;0;0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,1,5,20192,ENSMUSG00000057378,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
10787,cg08629289,-0.00000283,0.00000748,-0.378113504,0.705605058,loss,ns,-0.000000182,0.0000127,-0.014300959,0.988599073,neg,ns,0.007693315,0.003724826,2.065415862,0.039714579,pos,ns,1.401050039,-0.0000059,0.000128096,-0.046089388,0.96326868,neg,ns,0.84927017,Tmem266,Tmem266_Intron,9,55424007,55424056,55424055,55424056,50,+,TAAATCATTAGTTTGCAACTGTCTCCTGATTTTTATTGTTACCAACAACG,"Intron (Tmem266-202/Tmem266, intron 9 of 10)",9,55326913,55438345,111433,1,Tmem266-202,97094,Tmem266-202;Tmem266-201;Tmem266-203,Tmem266;Tmem266;Tmem266,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,2,244886,ENSMUSG00000032313,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4089,cg26275174,0.0000645,0.0000176,3.671735353,0.000283629,gain,ns,0.000000427,0.0000298,0.014297254,0.988602027,pos,ns,0.007615733,0.008742951,0.871071157,0.384389364,pos,ns,0.415228638,0.000510152,0.000300669,1.696721955,0.090753014,pos,ns,0.787372728,Smarca2,Smarca2_fiveUTR,19,26749825,26749874,26749873,26749874,50,-,CCCAGCTCTCTTTTTTTTCCTGATCAGCTGATGAAGAGACTAGCAGCTCG,5' UTR,19,26605050,26778275,173226,1,Smarca2-216,144775,Smarca2-216;Smarca2-201;Smarca2-209;Smarca2-202;Smarca2-206;Smarca2-239;Smarca2-215;Smarca2-223;Smarca2-214;Smarca2-211;Smarca2-229;Smarca2-225;Smarca2-240;Smarca2-242;Smarca2-227;Smarca2-204;Smarca2-221;Smarca2-246;Smarca2-244;Smarca2-203;Smarca2-237;Smarca2-220;Smarca2-238;Smarca2-210;Smarca2-213;Smarca2-228;Smarca2-218;Smarca2-241;Smarca2-233;Smarca2-243;Smarca2-230;Smarca2-205;Smarca2-234;Smarca2-224;Smarca2-231;Smarca2-207;Smarca2-226;Smarca2-217,Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2;Smarca2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;-415;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,6,8,67155,ENSMUSG00000024921,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4313,cg07599101,-0.0000658,0.0000144,-4.559473542,0.00000739,loss,ns,0.000000351,0.0000245,0.014293435,0.988605071,pos,ns,-0.021363381,0.007184054,-2.973722136,0.003172992,neg,ns,2.49853102,0.00050737,0.000247059,2.053638299,0.040849286,pos,ns,0.860253787,Supt5,Supt5_threeUTR,7,28322513,28322562,28322513,28322514,50,-,CGGTTCCCCTCAAAGATGAGGAAGTCACCATCAGAGGCAACATCACCCCC,3' UTR,7,28314891,28338746,23856,2,Supt5-202,16184,Supt5-202;Supt5-203;Supt5-201;Supt5-208;Supt5-207;Supt5-204;Supt5-205;Supt5-206,Supt5;Supt5;Supt5;Supt5;Supt5;Supt5;Supt5;Supt5,0;0;0;0;-3721;6861;6524;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,3,20924,ENSMUSG00000003435,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
5906,cg22894295,0.000000275,0.0000018,0.152327209,0.879027958,gain,ns,4.37E-08,0.00000306,0.014263823,0.988628677,pos,ns,0.001119718,0.000897093,1.248163258,0.212913174,pos,ns,0.671797466,-0.0000321,0.0000309,-1.041986932,0.298229662,neg,ns,0.967348881,Ctnna1,Ctnna1_Exon,18,35214132,35214181,35214132,35214133,50,-,CGGCATTTGGGTGGACACGCCATACCCAGGGCAGGCAGCATTTTTAAAAC,"Exon (Lrrtm2-201/Lrrtm2, exon 2 of 2)",18,35118859,35254779,135921,1,Ctnna1-201,95273,Ctnna1-201;Ctnna1-204;Ctnna1-210;Ctnna1-203;Ctnna1-202;Lrrtm2-201;Lrrtm2-202;Lrrtm2-203,Ctnna1;Ctnna1;Ctnna1;Ctnna1;Ctnna1;Lrrtm2;Lrrtm2;Lrrtm2,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,13,12385,ENSMUSG00000037815,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
3174,cg20959113,-0.0000428,0.00000895,-4.781485462,0.00000269,loss,ns,0.000000216,0.0000152,0.014190421,0.98868719,pos,ns,-0.007990349,0.004452893,-1.794417762,0.073720743,neg,ns,1.132410294,-0.000115499,0.000153135,-0.754231646,0.45128267,neg,ns,0.762041966,Gm46443,Gm46443_Intergenic_upstream,14,23116337,23116386,23116385,23116386,50,-,TTCTGATGATGTATGGCCCCAATACATCATCAAAGCTCCTTGCTCTGCCG,Distal Intergenic,14,23321144,23321507,364,1,Gm46443-201,-204807,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,12,12,108168141,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1316,cg19629292,0.000022,0.00000342,6.417539408,5.18E-10,gain,yes,-8.22E-08,0.00000581,-0.014135813,0.988730721,neg,ns,0.003822317,0.001703188,2.244213791,0.025523999,pos,ns,1.593051276,-0.0000766,0.0000586,-1.308532479,0.191662059,neg,ns,0.038719066,Fezf2,Fezf2_fiveUTR,14,12345613,12345662,12345613,12345614,50,-,CGTTCCGAGCCATGCAGCGTGTCTCTTCTGTCACATTTTGATGGCAAACA,Promoter (<=1kb),14,12342094,12345844,3751,2,Fezf2-203,182,Fezf2-203;Fezf2-201;Fezf2-202,Fezf2;Fezf2;Fezf2,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,13,45,54713,ENSMUSG00000021743,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
24149,cg05081470,0.000148549,0.0000138,10.73691678,4.49E-23,gain,yes,-0.000000332,0.0000235,-0.014126275,0.988738325,neg,ns,0.019808215,0.006886004,2.876590666,0.00429869,pos,ns,2.366663906,-0.0000124,0.000236809,-0.052572256,0.958106584,neg,ns,0.121851967,Mycl,Mycl_Exon,4,122996593,122996642,122996593,122996594,50,-,CGCCCAGCGAGGACATCTGGAAGAAATTCGAGCTGGTGCCATCGCCCCCC,Promoter (<=1kb),4,122995652,122996739,1088,1,Mycl-204,941,Mycl-204;Mycl-202;Mycl-201;Mycl-203;Mycl-205,Mycl;Mycl;Mycl;Mycl;Mycl,0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,4,16918,ENSMUSG00000028654,conserved gene and region,4,122996386,122997032,647,*,647,60,0.678516229,0.806063123,0.092735703,1.21E-43,CpGisland,TRUE,U3,Pr-B
22212,cg16499073,-0.00000303,0.00000701,-0.432004528,0.666038447,loss,ns,0.000000167,0.0000119,0.014044956,0.988803149,pos,ns,0.011594577,0.003489539,3.322666856,0.00099834,pos,ns,3.000721498,-0.000315397,0.000120005,-2.628202297,0.009011098,neg,ns,0.925843134,Tmem170,Tmem170_Exon,8,111869618,111869667,111869618,111869619,50,-,CGATGCCCATCAACAGGATGCTTACAGACATGAACCTACCATATTTGTGA,"Exon (Tmem170-201/Tmem170, exon 2 of 3)",8,111863038,111876750,13713,2,Tmem170-201,7083,Tmem170-201,Tmem170,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,66817,ENSMUSG00000031953,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
4737,cg08589688,0.00000429,0.00000294,1.456283173,0.146326397,gain,ns,6.98E-08,0.000005,0.013962415,0.988868948,pos,ns,0.001197283,0.001465113,0.817195085,0.414444543,pos,ns,0.382533575,-0.0000438,0.0000504,-0.869360153,0.385322771,neg,ns,0.898225127,Cacna1d,Cacna1d_Exon,14,30350752,30350801,30350752,30350753,50,+,CGTATTGCTGACGTTTTCTTTGGGAGAGAGATCCTACAGGTGGGGGTGCA,"Exon (Cacna1d-202/Cacna1d, exon 2 of 47)",14,30039941,30491453,451513,2,Cacna1d-202,140652,Cacna1d-202;Cacna1d-201;Cacna1d-208;Cacna1d-209;Cacna1d-214;Cacna1d-204;Cacna1d-207;Cacna1d-218;Cacna1d-216;Cacna1d-205,Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d;Cacna1d,0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,26,12289,ENSMUSG00000015968,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11015,cg14113335,-0.0000261,0.0000165,-1.584039119,0.114204403,loss,ns,-0.000000385,0.000028,-0.013763597,0.989027439,neg,ns,0.003830447,0.008190677,0.467659389,0.64035677,pos,ns,0.193577995,-0.0000345,0.000281677,-0.122506131,0.902577571,neg,ns,0.877075911,Gm13518,Gm13518_Intergenic_downstream,2,56257869,56257918,56257917,56257918,50,-,CTGTCTCATGATTAATGATTCATGCTACTGAACACAAAAGTGCCGCACCG,Distal Intergenic,2,56039853,56040085,233,1,Gm13518-201,218065,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,37,37,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14806,cg02405742,0.000000506,0.00000171,0.295190234,0.768046166,gain,ns,-3.96E-08,0.00000291,-0.013599313,0.989158401,neg,ns,0.001717347,0.000853288,2.012623188,0.045018736,pos,ns,1.346606705,-0.000061,0.0000293,-2.078104911,0.038522244,neg,ns,0.956328189,Myo18a,Myo18a_Intron,11,77856171,77856220,77856171,77856172,50,+,CGATTTACTTAGAGATACAGTTGTTATTGCCATAACCTTAATGAAAGCAG,"Intron (Myo18a-208/Myo18a, intron 40 of 41)",11,77763246,77865980,102735,1,Myo18a-208,92925,Myo18a-208;Myo18a-209;Myo18a-207;Myo18a-201;Myo18a-203;Myo18a-222;Myo18a-223;Myo18a-211;Myo18a-205;Myo18a-210;Myo18a-224;Myo18a-202;Myo18a-220;Myo18a-221;Myo18a-214;Myo18a-212;Myo18a-215;Myo18a-216,Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a;Myo18a,0;0;0;0;0;0;0;0;0;0;0;0;0;0;6720;5515;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,18,360013,ENSMUSG00000000631,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
5242,cg20918661,-0.000000167,0.000000451,-0.370293071,0.711417006,loss,ns,1.02E-08,0.000000766,0.013364686,0.989345438,pos,ns,0.00062245,0.000224276,2.775370973,0.005848796,pos,ns,2.232933552,-0.0000161,0.00000771,-2.0811547,0.038240268,neg,ns,0.011087158,Atxn7l1,Atxn7l1_Exon,12,33147850,33147899,33147850,33147851,50,+,CGGAGGCGTTTCTGGGCAAACCCTGGTCCTCCTGGATCGACGCCGCCAAA,Promoter (<=1kb),12,33147693,33251146,103454,1,Atxn7l1-201,157,Atxn7l1-201;Atxn7l1-203;Atxn7l1-212;Atxn7l1-206;Atxn7l1-204;Atxn7l1-208,Atxn7l1;Atxn7l1;Atxn7l1;Atxn7l1;Atxn7l1;Atxn7l1,0;0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,24,380753,ENSMUSG00000020564,conserved gene and region,12,33147823,33147930,108,*,108,9,0.611111111,0.934615385,0.083333333,0.00000176,CpGisland,TRUE,U1,Pr-A
15573,cg14884775,0.0000256,0.0000116,2.204438765,0.02822791,gain,ns,0.000000263,0.0000197,0.013322257,0.989379261,pos,ns,0.000114343,0.005785352,0.019764274,0.984244132,pos,ns,0.006897166,0.0000157,0.000198958,0.078961347,0.937114312,pos,ns,0.610403591,Gm50297,Gm50297_Intergenic_downstream,18,81852611,81852660,81852659,81852660,50,-,TTCATTTCAGAAATCAATATTTACAATTTACTTCTTTCAAAGTTCATTCG,Distal Intergenic,18,82261062,82261262,201,2,Gm50297-201,408651,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,17,17,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18026,cg23949524,0.0000155,0.0000026,5.94506865,7.44E-09,gain,yes,-5.89E-08,0.00000442,-0.013318305,0.989382411,neg,ns,0.001028127,0.001295737,0.793468807,0.42811164,pos,ns,0.368442964,0.0000366,0.0000446,0.820931744,0.412315989,pos,ns,0.089797391,Elk3,Elk3_fiveUTR,10,93311009,93311058,93311057,93311058,50,+,ATTATTCCCCAGGCGGTGTGCAGTCTGTGTAAACAGGCTTTTCCGCCCCG,Promoter (<=1kb),10,93247414,93311135,63722,2,Elk3-201,77,Elk3-201;Elk3-202;Elk3-204;Elk3-203,Elk3;Elk3;Elk3;Elk3,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,7,13713,ENSMUSG00000008398,conserved gene and region,10,93310984,93311348,365,*,365,44,0.739726027,0.900981767,0.120547945,1.29E-37,CpGisland,TRUE,NA,NRS
38,cg08477399,-0.00000404,0.00000106,-3.802679851,0.000172374,loss,ns,2.38E-08,0.00000181,0.013194787,0.989480876,pos,ns,-0.000317899,0.000529058,-0.600877802,0.548360453,neg,ns,0.260933873,-0.00000125,0.0000182,-0.068900633,0.945113136,neg,ns,0.977465857,Smtn,Smtn_threeUTR,11,3520767,3520816,3520815,3520816,50,-,AGGGGTTAGGACTTTTTGGTTTTTACCAGCCCCTTCTGGACCAGACAGCG,3' UTR,11,3517523,3527937,10415,2,Smtn-201,7121,Selenom-202;Selenom-203;Selenom-201;Smtn-201;Smtn-204;Smtn-203;Smtn-208;Smtn-202;Smtn-210;Smtn-206,Selenom;Selenom;Selenom;Smtn;Smtn;Smtn;Smtn;Smtn;Smtn;Smtn,6083;6065;5900;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,6,29856,ENSMUSG00000020439,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
15388,cg07240567,0.00000268,0.00000393,0.682772106,0.495260764,gain,ns,0.000000088,0.00000668,0.013174082,0.989497382,pos,ns,-0.000428475,0.001956372,-0.219015359,0.826782209,neg,ns,0.082608877,0.0000352,0.0000673,0.523738192,0.600834861,pos,ns,0.894406726,Gria2,Gria2_threeUTR,3,80689176,80689225,80689224,80689225,50,+,TGCGAGGAAGATGGGTTAATATTCTGTGCATTCTTTGCCACCTTCATTCG,3' UTR,3,80681450,80802835,121386,2,Gria2-201,113610,Gria2-201;Gria2-202;Gria2-203;Gria2-206,Gria2;Gria2;Gria2;Gria2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,12,19,14800,ENSMUSG00000033981,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17331,cg04525496,0.00005,0.00000449,11.14400074,1.76E-24,gain,yes,0.0000001,0.00000763,0.013135431,0.989528193,pos,ns,0.008537064,0.002234959,3.819785141,0.00016135,pos,ns,3.792231672,-0.00010169,0.0000769,-1.323056682,0.186791586,neg,ns,0.093652063,Vcan,Vcan_fiveUTR,13,89742342,89742391,89742390,89742391,50,-,CAAGTTCAAATGCGGGTTGTGACACCCATCATCATTATATCACTGTACCG,Promoter (<=1kb),13,89655312,89742509,87198,2,Vcan-203,118,Vcan-203;Vcan-206;Vcan-202;Vcan-201;Vcan-205;Vcan-209,Vcan;Vcan;Vcan;Vcan;Vcan;Vcan,0;0;0;0;-24;-1945,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,6,13003,ENSMUSG00000021614,conserved gene and region,13,89742082,89742416,335,*,335,23,0.605970149,0.757620452,0.068656716,4.35E-14,CpGisland,TRUE,U3,Pr-B
4614,cg00809033,0.0000143,0.00000312,4.591621309,0.0000064,gain,ns,-6.96E-08,0.0000053,-0.01312796,0.989534149,neg,ns,0.004038439,0.001553554,2.599484746,0.009783087,pos,ns,2.009524064,-0.0000923,0.0000534,-1.727752731,0.085028474,neg,ns,0.066910154,Ntm,Ntm_Promoter,9,29962649,29962698,29962649,29962650,50,-,CGGTAGCAGCCAGAATCAAATCAATATTCTCACAGCCTAGTCGGGAGAAT,Promoter (<=1kb),9,28994750,29963129,968380,2,Ntm-201,431,Ntm-201;Ntm-204;Ntm-210;Ntm-207;Ntm-209,Ntm;Ntm;Ntm;Ntm;Ntm,0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,5,32,235106,ENSMUSG00000059974,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17631,cg24801560,0.00000256,0.00000336,0.762532445,0.4463221,gain,ns,7.43E-08,0.00000571,0.013019511,0.989620601,pos,ns,0.001080129,0.001672513,0.645811641,0.518879096,pos,ns,0.284933825,-0.000039,0.0000575,-0.677826988,0.498386987,neg,ns,0.914530996,Olig1,Olig1_Intron,16,91305578,91305627,91305578,91305579,50,+,CGGACTGCAAGTGGCTGAGCCATCTGGCTCATATCTCCACAGTAAAACAT,"Intron (Gm15966-209/Gm15966-209, intron 1 of 2)",16,91269772,91271933,2162,1,Olig1-201,35806,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,9,50914,ENSMUSG00000046160,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13121,cg18101367,-0.00000266,0.00000129,-2.067606984,0.039506468,loss,ns,2.82E-08,0.00000219,0.012910754,0.9897073,pos,ns,-0.0000478,0.00064099,-0.074509814,0.940652789,neg,ns,0.026570653,0.0000242,0.000022,1.096828302,0.273567738,pos,ns,0.042121315,Nsun2,Nsun2_Exon,13,69534088,69534137,69534088,69534089,50,+,CGGCCCACGCCCTGCGAGGTCTCCCAGATCTGCATCCACAGGGCATTGGC,Promoter (<=1kb),13,69533746,69615468,81723,1,Nsun2-206,342,Nsun2-206;Nsun2-207;Tent4a-202;Tent4a-201;Tent4a-204;Tent4a-203,Nsun2;Nsun2;Tent4a;Tent4a;Tent4a;Tent4a,0;0;0;-224;-1656;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,28114,ENSMUSG00000021595,mapped to different genes,13,69533393,69535240,1848,*,1848,290,0.762445887,1.08430956,0.156926407,1.94E-284,CpGisland,TRUE,U1,Pr-A
23976,cg06956589,-0.000049,0.00000881,-5.560787226,0.000000058,loss,yes,-0.00000019,0.000015,-0.012711831,0.989865877,neg,ns,-0.014591819,0.004387037,-3.326122064,0.000986471,neg,ns,3.005915747,0.00024121,0.00015087,1.598794256,0.110885015,pos,ns,0.818624258,Dock9,Dock9_threeUTR,14,121591838,121591887,121591886,121591887,50,+,AGGCTGCCCAGCTGCTGCAATCTGGCATGCATCATTCCTGTTCTGTTACG,3' UTR,14,121542046,121738861,196816,2,Dock9-208,146974,Dock9-208;Dock9-203;Dock9-201;Dock9-206;Dock9-209;Dock9-212;Dock9-202;Dock9-207;Dock9-205,Dock9;Dock9;Dock9;Dock9;Dock9;Dock9;Dock9;Dock9;Dock9,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,4,105445,ENSMUSG00000025558,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
11686,cg13627734,-0.00000202,0.00000213,-0.948064832,0.343834909,loss,ns,-4.56E-08,0.00000362,-0.012596712,0.989957647,neg,ns,-0.000657895,0.001061583,-0.619730335,0.535890574,neg,ns,0.270923882,-0.0000167,0.0000365,-0.457139506,0.647890958,neg,ns,0.95685328,Rab11fip2,Rab11fip2_Intron,19,59928318,59928367,59928366,59928367,50,+,AGCTCGTTAATTACCTAAACTATATCTCCATAGGTCTTGTTAATTACCCG,"Intron (Rab11fip2-203/Rab11fip2, intron 3 of 4)",19,59902884,59943654,40771,2,Rab11fip2-203,15287,Rab11fip2-203;Rab11fip2-201;Rab11fip2-202,Rab11fip2;Rab11fip2;Rab11fip2,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,3,74998,ENSMUSG00000040022,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
4624,cg26179428,-0.00000508,0.00000183,-2.7834941,0.00570786,loss,ns,-3.89E-08,0.0000031,-0.01255069,0.989994334,neg,ns,-0.0000259,0.000908833,-0.028488592,0.977290798,neg,ns,0.009976191,0.0000123,0.0000313,0.393477309,0.69423746,pos,ns,0.071671817,E2f3,E2f3_Exon,13,29985536,29985585,29985584,29985585,50,+,CGAAGCCGGGGCTGGCTAGCAGTGCCCTTTTGTCCATGGAGGCTGCAGCG,Promoter (<=1kb),13,29906575,29986063,79489,2,E2f3-201,478,E2f3-203;E2f3-204;E2f3-201;E2f3-202,E2f3;E2f3;E2f3;E2f3,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,5,10,13557,ENSMUSG00000016477,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
16153,cg09412027,-0.00000591,0.00000284,-2.084288339,0.037952379,loss,ns,-6.03E-08,0.00000482,-0.012511099,0.990025895,neg,ns,-0.00020776,0.001412226,-0.147115498,0.883136488,neg,ns,0.053972171,-0.000073,0.0000486,-1.503186313,0.133809023,neg,ns,0.951328847,Pcdh17,Pcdh17_Exon,14,84533038,84533087,84533038,84533039,50,+,CGAAACTGTGAATCCCACTGGGAAAAAGACTTTTTGTACATTTGGAAAAG,"Exon (Pcdh17-201/Pcdh17, exon 4 of 4)",14,84443563,84539002,95440,1,Pcdh17-201,89475,Pcdh17-201,Pcdh17,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,9,13,219228,ENSMUSG00000035566,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18319,cg00817637,0.0000016,0.00000288,0.555149092,0.579193044,gain,ns,-6.07E-08,0.00000489,-0.012418921,0.990099378,neg,ns,-0.001330385,0.001432462,-0.928740687,0.353746073,neg,ns,0.451308372,0.0000737,0.0000493,1.495090843,0.135907987,pos,ns,0.057192873,Gm48316,Gm48316_Intergenic_upstream,13,94710253,94710302,94710253,94710254,50,-,CGCTCTCATTACAAACGCTGATTAAACTGCAAATTATCCAGCAGCGGCCC,Distal Intergenic,13,94752270,94752593,324,1,Gm48316-201,-42017,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,36,42,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U3,Pr-B
13356,cg22670250,-0.0000175,0.0000133,-1.323884511,0.186516779,loss,ns,-0.000000278,0.0000225,-0.012354088,0.990151062,neg,ns,0.000610372,0.006596731,0.092526456,0.926339538,pos,ns,0.033229799,0.000193115,0.000226861,0.851247251,0.395289085,pos,ns,0.398342184,Nr2f2,Nr2f2_Intron,7,70329584,70329633,70329584,70329585,50,-,CGAATGGCAAGTCTTTATGGAAAGTGTTTTGCATAATTACATACCAAAGC,"Intron (Gm29683-202/Gm29683-202, intron 1 of 3)",7,70353074,70355237,2164,2,Nr2f2-203,25653,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,20,69,11819,ENSMUSG00000030551,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
17401,cg00463693,-0.0000377,0.00000662,-5.693626435,2.89E-08,loss,yes,-0.000000138,0.0000112,-0.01229953,0.990194554,neg,ns,-0.004310956,0.003294871,-1.308383623,0.191712457,neg,ns,0.717349668,0.0000455,0.00011331,0.401300595,0.688475307,pos,ns,0.923756409,Tpm3,Tpm3_Exon,3,90098377,90098426,90098377,90098378,50,+,CGTCTCTACAGCCAACTTGAGCGAAACCGCCTGCTTTCTAATGAGCTGAA,"Exon (Tpm3-203/Tpm3, exon 8 of 8)",3,90072651,90100902,28252,1,Tpm3-204,25726,Tpm3-204;Tpm3-201;Tpm3-202;Tpm3-203;Tpm3-210,Tpm3;Tpm3;Tpm3;Tpm3;Tpm3,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,6,59069,ENSMUSG00000027940,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22161,cg06937965,-0.0000656,0.00000855,-7.677182627,2.14E-13,loss,yes,0.000000176,0.0000145,0.012135234,0.990325528,pos,ns,0.006647871,0.00425542,1.562212684,0.119258139,pos,ns,0.923511971,-0.000353091,0.000146344,-2.412753869,0.016412653,neg,ns,0.774529637,Nap1l1,Nap1l1_Exon,10,111495051,111495100,111495099,111495100,50,+,GGTTATCAGCTCTTTGAAGAAGTCAAAAGCTGCAGTAAACTTTTCCAACG,"Exon (Nap1l1-207/Nap1l1, exon 14 of 14)",10,111473223,111496884,23662,1,Nap1l1-201,21828,Nap1l1-201;Nap1l1-207;Nap1l1-202;Nap1l1-205;Nap1l1-203;Nap1l1-204;Nap1l1-206,Nap1l1;Nap1l1;Nap1l1;Nap1l1;Nap1l1;Nap1l1;Nap1l1,0;0;0;21770;0;4206;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,53605,ENSMUSG00000058799,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
2473,cg07072204,-0.0000301,0.00000604,-4.983056897,0.00000104,loss,yes,-0.000000124,0.0000103,-0.012131123,0.990328805,neg,ns,-0.002710898,0.003006458,-0.901691649,0.367920709,neg,ns,0.434245767,-0.000170676,0.000103392,-1.650766782,0.099798893,neg,ns,0.921418256,Gm12028,Gm12028_Intergenic_downstream,11,19746732,19746781,19746732,19746733,50,+,CGAGGTGCTATTGATGTTTGGATTAAACCATGCCTCTGTGATCAAGTACT,Downstream (2-3kb),11,19749419,19750066,648,2,Gm12028-201,3285,Gm12028-201,Gm12028,3285,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Intergenic_downstream,1,3,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
283,cg10737780,-0.00000341,0.00000162,-2.10965589,0.03568931,loss,ns,-3.29E-08,0.00000274,-0.011999151,0.990434011,neg,ns,0.000693744,0.000803874,0.863000875,0.388804145,pos,ns,0.410269114,0.0000232,0.0000276,0.838192886,0.402568184,pos,ns,0.048581338,Arid1b,Arid1b_Exon,17,4995685,4995734,4995733,4995734,50,-,TGATCAACATGGCGGACAACAAAGCCCCGGGATGGGGATGATGCACTCCG,"Exon (Arid1b-201/Arid1b, exon 1 of 19)",17,4994332,5097733,103402,1,Arid1b-204,1353,Arid1b-204;Arid1b-201;Arid1b-207;Arid1b-202;Arid1b-203;Arid1b-206,Arid1b;Arid1b;Arid1b;Arid1b;Arid1b;Arid1b,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,11,239985,ENSMUSG00000069729,conserved gene and region,17,4995241,4995884,644,*,644,73,0.723602485,0.866213403,0.113354037,7.08E-60,CpGisland,TRUE,U1,Pr-A
27743,cg24134664,0.000033,0.00000709,4.651736282,0.00000488,gain,ns,-0.000000144,0.000012,-0.011992412,0.990439383,neg,ns,-0.00165326,0.003527019,-0.468741452,0.639583903,neg,ns,0.194102475,0.000151923,0.000121294,1.252522445,0.211323612,pos,ns,0.620969494,Kcnq2,Kcnq2_Exon,2,181085261,181085310,181085309,181085310,50,-,GACTCTCTCGGAGGGGCCGTGGGTCCTTTGGTGGGGTACTTCTTGTGCCG,"Exon (Kcnq2-201/Kcnq2, exon 14 of 17)",2,181075579,181135214,59636,2,Kcnq2-217,49904,Kcnq2-217;Kcnq2-201;Kcnq2-220;Kcnq2-202;Kcnq2-203;Kcnq2-204;Kcnq2-205;Kcnq2-208;Kcnq2-212;Kcnq2-206;Kcnq2-207;Kcnq2-221;Kcnq2-218;Kcnq2-216;Kcnq2-210,Kcnq2;Kcnq2;Kcnq2;Kcnq2;Kcnq2;Kcnq2;Kcnq2;Kcnq2;Kcnq2;Kcnq2;Kcnq2;Kcnq2;Kcnq2;Kcnq2;Kcnq2,0;0;0;0;0;0;0;0;0;0;0;0;0;0;49867,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,16536,ENSMUSG00000016346,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2537,cg23247277,0.00000421,0.00000225,1.867834217,0.06272855,gain,ns,-4.58E-08,0.00000383,-0.011960169,0.990465086,neg,ns,0.002854383,0.001121803,2.544460582,0.011429465,pos,ns,1.941974112,-0.000076,0.0000386,-1.970928444,0.049621379,neg,ns,0.940267884,Pde7b,Pde7b_threeUTR,10,20399613,20399662,20399661,20399662,50,-,AGGTAGCAATCCCATAATACTCATGTATTTTGGCATGGGAATCAGTAGCG,3' UTR,10,20398004,20725078,327075,2,Pde7b-201,325416,Pde7b-201;Pde7b-204;Pde7b-205;Pde7b-206,Pde7b;Pde7b;Pde7b;Pde7b,0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,4,29863,ENSMUSG00000019990,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23755,cg04665204,-0.000221122,0.0000204,-10.82724732,2.20E-23,loss,yes,0.000000414,0.0000347,0.011925666,0.990492592,pos,ns,0.077358655,0.010164619,7.610580881,3.31E-13,pos,yes,12.48067436,-0.003832573,0.00034956,-10.96397854,7.41E-24,neg,yes,0.616742052,Bahcc1,Bahcc1_Intron,11,120280710,120280759,120280758,120280759,50,-,GGCAGGCCCATTTGCATAAATCCTCCGAGCTCCTCCAAACACGATTGGCG,"Intron (Bahcc1-203/Bahcc1, intron 14 of 27)",11,120232947,120292282,59336,1,Bahcc1-203,47763,Bahcc1-203;Bahcc1-201;Bahcc1-202,Bahcc1;Bahcc1;Bahcc1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,11,268515,ENSMUSG00000039741,conserved gene and region,11,120280511,120280767,257,*,257,24,0.595330739,1.070461645,0.093385214,7.46E-18,CpGisland,TRUE,NA,NRS
19737,cg25617425,0.0000034,0.00000568,0.598174404,0.550160334,gain,ns,-0.000000115,0.00000965,-0.011879735,0.990529207,neg,ns,0.004650756,0.002826186,1.645594596,0.100860733,pos,ns,0.996277878,-0.000196688,0.0000972,-2.023694811,0.043859158,neg,ns,0.886454661,Cachd1,Cachd1_Exon,4,100974824,100974873,100974872,100974873,50,+,GAATGGATGACACAAATGGAAATGAGTAGCCTGAACACTTACATTGTCCG,"Exon (Cachd1-201/Cachd1, exon 15 of 27)",4,100776675,101004544,227870,1,Cachd1-201,198149,Cachd1-201;Cachd1-202,Cachd1;Cachd1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,5,320508,ENSMUSG00000028532,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17547,cg01145031,0.0000176,0.00000577,3.055977524,0.002438336,gain,ns,0.000000115,0.0000098,0.011719515,0.990656933,pos,ns,-0.000643928,0.002871793,-0.224225141,0.82272983,neg,ns,0.084742756,-0.0000686,0.0000988,-0.69429596,0.488016603,neg,ns,0.776030366,Anks1b,Anks1b_fiveUTR,10,90897279,90897328,90897327,90897328,50,+,GTCTCCATCACTTAGCCAAAGCACTTACACCACTGGTGGCTCCCTAGACG,5' UTR,10,89873509,90970219,1096711,1,Anks1b-233,1023770,Anks1b-233;Anks1b-222;Anks1b-214;Anks1b-215;Anks1b-208;Anks1b-210;Anks1b-221;Anks1b-219;Anks1b-213;Anks1b-216;Anks1b-224;Anks1b-231;Anks1b-218;Anks1b-217;Anks1b-201;Anks1b-211;Anks1b-229;Anks1b-212;Anks1b-225;Anks1b-205;Anks1b-204;Anks1b-220;Anks1b-232;Anks1b-202;Anks1b-228,Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b;Anks1b,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,9,14,77531,ENSMUSG00000058589,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18659,cg26577015,-0.0000157,0.00000596,-2.635737801,0.008817798,loss,ns,-0.000000118,0.0000101,-0.011646352,0.990715257,neg,ns,-0.004834505,0.002965146,-1.630444203,0.104023207,neg,ns,0.982869763,0.000118524,0.000101971,1.162332961,0.245994287,pos,ns,0.887586521,Tenm4,Tenm4_Intron,7,96609940,96609989,96609988,96609989,50,-,TTCCTGGGGACATTCTCTAATGGGTAACTCCATCACGTTCCAGCTTGGCG,"Intron (Tenm4-201/Tenm4, intron 6 of 32)",7,96171246,96908569,737324,1,Tenm4-201,438694,Tenm4-201;Tenm4-203;Tenm4-202,Tenm4;Tenm4;Tenm4,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,26,23966,ENSMUSG00000048078,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
375,cg21743182.1,0.0000454,0.00000585,7.758070377,1.26E-13,gain,yes,0.000000114,0.00000993,0.011463709,0.990860858,pos,ns,0.002752544,0.00290955,0.946037807,0.344866107,pos,ns,0.462349485,0.0000686,0.000100059,0.685712579,0.493406847,pos,ns,0.703882072,Cdk14,Cdk14_fiveUTR,5,5265671,5265720,5265719,5265720,50,+,GCAACTGAATTCACATCTTTCTGCACTAGCAAGCTGAAATGGTACGGCCG,Promoter (<=1kb),5,4803391,5266068,462678,2,Cdk14-203,348,Cdk14-203;Cdk14-201;Cdk14-202;Cdk14-204;Cdk14-207;Cdk14-208;Cdk14-206;Cdk14-210;Cdk14-205;Cdk14-212;Cdk14-209,Cdk14;Cdk14;Cdk14;Cdk14;Cdk14;Cdk14;Cdk14;Cdk14;Cdk14;Cdk14;Cdk14,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,16,18647,ENSMUSG00000028926,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1485,cg08276846,0.0000613,0.0000104,5.90845533,9.09E-09,gain,yes,0.000000202,0.0000176,0.011442891,0.990877454,pos,ns,0.02482416,0.005164117,4.807047815,0.00000239,pos,ns,5.621247017,-0.0000591,0.000177594,-0.332938092,0.739406062,neg,ns,0.29151183,Gm18083,Gm18083_Intergenic_upstream,18,13221891,13221940,13221939,13221940,50,-,GTGGTCTTGGAGGCCTCTGATGAATTGCAAAAGACACTCACCAGCTGCCG,Distal Intergenic,18,13152052,13152805,754,2,Gm18083-201,-69135,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,100416378,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
383,cg15027745,-0.0000151,0.00000843,-1.792610342,0.074010151,loss,ns,0.000000163,0.0000143,0.011399111,0.990912355,pos,ns,0.001813559,0.004197574,0.432049263,0.666005968,pos,ns,0.176521879,-0.000250058,0.000144354,-1.732250582,0.084223605,neg,ns,0.62235654,Zfhx4,Zfhx4_Exon,3,5330112,5330161,5330160,5330161,50,+,GGTCCATTATACAATAATTCCAATGTTAATGCTACTTTGCAAAATGAGCG,"Exon (Zfhx4-202/Zfhx4, exon 2 of 2)",3,5218526,5413165,194640,1,Zfhx4-203,111586,Zfhx4-203;Zfhx4-202;Zfhx4-201;Zfhx4-205,Zfhx4;Zfhx4;Zfhx4;Zfhx4,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,23,77,80892,ENSMUSG00000025255,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
1939,cg13487071,-0.0000326,0.00000777,-4.199958717,0.0000349,loss,ns,0.00000015,0.0000132,0.011356773,0.990946106,pos,ns,-0.012402907,0.003866027,-3.208178793,0.001475496,neg,ns,2.831061849,0.0003173,0.000132952,2.386567098,0.017606064,pos,ns,0.798646333,Tfec,Tfec_Intron,6,16553819,16553868,16553867,16553868,50,-,TGCACAATTTCCAGCCATTCAAGCTCCCTTCAAAATTAACCTTTCCAGCG,"Intron (Gm36503-201/Gm36503-201, intron 1 of 2)",6,16834692,16835263,572,2,Tfec-204,281444,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,23,21426,ENSMUSG00000029553,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10577,cg27291660,0.000034,0.00000419,8.117744622,1.13E-14,gain,yes,-8.07E-08,0.00000711,-0.011343662,0.990956558,neg,ns,0.001139798,0.002084276,0.5468554,0.584871494,pos,ns,0.232939545,0.0000272,0.0000717,0.379750123,0.704390931,pos,ns,0.062521169,Prmt5,Prmt5_threeUTR,14,54516580,54516629,54516580,54516581,50,-,CGCGGATGGAAGACAGGCATGCAGAGGAAATCAAACCTACAACCGCGACA,Promoter (<=1kb),14,54507187,54517525,10339,2,Prmt5-201,896,Prmt5-201;Prmt5-206;Prmt5-202;Prmt5-207;Prmt5-204;Prmt5-205;Prmt5-203,Prmt5;Prmt5;Prmt5;Prmt5;Prmt5;Prmt5;Prmt5,0;-3124;0;0;0;-922;0,TRUE,FALSE,TRUE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,3,3,27374,ENSMUSG00000023110,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U4,Pr-F
18349,cg16111936,0.0000198,0.00000259,7.628166989,2.95E-13,gain,yes,-4.95E-08,0.00000441,-0.011245904,0.99103449,neg,ns,0.001686972,0.00129082,1.306899326,0.192215529,pos,ns,0.716211528,0.0000299,0.0000444,0.67340535,0.501191179,pos,ns,0.042318535,Otp,Otp_Promoter,13,94869026,94869075,94869074,94869075,50,-,CTGATTATTTTATTTGCAGCCATAATTATATTTCTTTCGGCTAAATCACG,Promoter (6-7kb),13,94875602,94885130,9529,1,Otp-201,-6576,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,27,34,18420,ENSMUSG00000021685,conserved gene and region,13,94869063,94869234,172,*,172,30,0.819767442,1.155913979,0.174418605,1.73E-31,CpGisland,TRUE,U3,Pr-B
12614,cg16316345,0.0000028,0.00000132,2.122475712,0.034590316,gain,ns,-0.000000025,0.00000224,-0.011149972,0.991110966,neg,ns,0.001206891,0.00065617,1.839295024,0.066827989,pos,ns,1.175041608,-0.0000488,0.0000226,-2.163675937,0.03125289,neg,ns,0.964539283,Trip4,Trip4_Exon,9,65864366,65864415,65864414,65864415,50,-,GAATCACTGGCAAAGTAATCTGACTCATCATCAATGACTTGGGTCCTTCG,"Exon (Trip4-210/Trip4, exon 10 of 15)",9,65828930,65908794,79865,2,Trip4-210,44379,Trip4-210;Trip4-203;Trip4-202;Trip4-201,Trip4;Trip4;Trip4;Trip4,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,56404,ENSMUSG00000032386,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19479,cg26921187,-0.00000252,0.000000991,-2.547029206,0.011347427,loss,ns,-1.87E-08,0.00000168,-0.01109455,0.991155148,neg,ns,0.000248924,0.000493348,0.504560045,0.61422633,pos,ns,0.21167157,-0.0000189,0.000017,-1.111621294,0.267162381,neg,ns,0.03034076,Foxn3,Foxn3_fiveUTR,12,99393042,99393091,99393042,99393043,50,+,CGAGAAATTGTTTCCACTGCAAACAAAAAAAGGCGACACATGACCAGGCA,Promoter (<=1kb),12,99195094,99393072,197979,2,Foxn3-209,0,Foxn3-201;Foxn3-209;Foxn3-202;Foxn3-207;Foxn3-208;Foxn3-205;Foxn3-214,Foxn3;Foxn3;Foxn3;Foxn3;Foxn3;Foxn3;Foxn3,0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,17,71375,ENSMUSG00000033713,conserved gene but different region,12,99392262,99393399,1138,*,1138,139,0.70913884,0.973607435,0.122144113,1.52E-118,CpGisland,TRUE,U1,Pr-A
16576,cg23902298,0.00000321,0.00000208,1.54042274,0.12447745,gain,ns,-3.91E-08,0.00000354,-0.011046187,0.991193702,neg,ns,0.000870095,0.001037376,0.838745998,0.402258141,pos,ns,0.395495158,-0.0000351,0.0000357,-0.983911557,0.325926282,neg,ns,0.050550002,Egr4,Egr4_Promoter,6,85513693,85513742,85513741,85513742,50,-,GTGACGTAAATGCCCAAACATGGACACAGGATGTGTGCCGGGGACTCCCG,Promoter (<=1kb),6,85511121,85513589,2469,2,Egr4-201,-153,Egr4-201,Egr4,-104,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,2,2,13656,ENSMUSG00000071341,conserved gene but different region,6,85513623,85513948,326,*,326,38,0.674846626,1.023886272,0.116564417,6.29E-32,CpGisland,TRUE,U3,Pr-B
6486,cg25107566,0.0000286,0.00000862,3.312716306,0.001033268,gain,ns,0.000000162,0.0000147,0.011044808,0.991194802,pos,ns,0.00194971,0.004292053,0.454260594,0.649959167,pos,ns,0.187113927,0.000285315,0.000147603,1.932985199,0.054148548,pos,ns,0.293874771,Zfp536,Zfp536_Exon,7,37473844,37473893,37473844,37473845,50,+,CGACTTACAGACACCATCCATTTGTTTGTTCTGAAATGACGAGTGGACCA,"Exon (Zfp536-204/Zfp536, exon 2 of 2)",7,37318024,37568390,250367,2,Zfp536-211,94497,Zfp536-211;Zfp536-204,Zfp536;Zfp536,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,13,112,243937,ENSMUSG00000043456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14163,cg21319323,0.0000306,0.00000347,8.813948138,8.84E-17,gain,yes,0.000000065,0.0000059,0.011020773,0.991213962,pos,ns,-0.000824768,0.001727836,-0.477341889,0.633455047,neg,ns,0.198284199,0.000142681,0.0000594,2.40121569,0.016929391,pos,ns,0.035614341,Hoxd3,Hoxd3_Promoter,2,74711836,74711885,74711884,74711885,50,-,CTATTTGCGGTCGTCATTGGCTGCGGCTGGTCATGTGCAGGCGCCGCTCG,Promoter (<=1kb),2,74711927,74748271,36345,1,Hoxd3-203,-91,Hoxd3-203;Hoxd4-203;Hoxd8-201;Hoxd8-202,Hoxd3;Hoxd4;Hoxd8;Hoxd8,0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,7,24,15434,ENSMUSG00000079277,mapped to different genes,2,74711843,74711929,87,*,87,9,0.632183908,1.044,0.103448276,0.000000274,CpGisland,TRUE,U3,Pr-B
6734,cg14852275,-0.000000207,0.00000126,-0.164208983,0.869673643,loss,ns,2.36E-08,0.00000215,0.011007431,0.991224598,pos,ns,-0.00022353,0.000628631,-0.355582208,0.722395303,neg,ns,0.141225086,-0.00000323,0.0000216,-0.149529299,0.881233225,neg,ns,0.967358813,Gsk3b,Gsk3b_Exon,16,38220074,38220123,38220122,38220123,50,-,TCATTTTTTGATGAATTACGGGACCCAAATGTCAAACTACCAAATGGGCG,"Exon (Gsk3b-201/Gsk3b, exon 9 of 11)",16,38089001,38246084,157084,1,Gsk3b-201,131073,Gsk3b-201;Gsk3b-202;Gsk3b-205,Gsk3b;Gsk3b;Gsk3b,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,11,56637,ENSMUSG00000022812,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
19651,cg16903788,0.000038,0.00000731,5.201535246,0.00000036,gain,yes,0.000000136,0.0000124,0.010994747,0.99123471,pos,ns,0.006971142,0.00363665,1.916913106,0.056168038,pos,ns,1.250510743,-0.000193262,0.000125064,-1.545302961,0.123293208,neg,ns,0.124175419,Gm28267,Gm28267_Intergenic_upstream,9,100272188,100272237,100272236,100272237,50,+,CTACCCCTTTCAGTCAATAGCTGCCAGCATCGGGCACTTCTGTCAAAACG,Distal Intergenic,9,100404495,100404759,265,1,Gm28267-201,-132258,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,29,29,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
8741,cg12448957,-0.00000567,0.0000022,-2.580297446,0.010331368,loss,ns,-4.09E-08,0.00000373,-0.010955058,0.99126635,neg,ns,0.000407645,0.001093536,0.372777044,0.709569134,pos,ns,0.149005284,-0.00007,0.0000376,-1.860579946,0.063750239,neg,ns,0.937205265,Tmem63b,Tmem63b_Exon,17,45662869,45662918,45662917,45662918,50,-,GCACGATGATGGGGCAGGTGATACTGTAGGTCATGACCACCGTGAAGACG,"Exon (Tmem63b-201/Tmem63b, exon 20 of 24)",17,45660171,45686259,26089,2,Tmem63b-201,23341,Capn11-201;Capn11-202;Tmem63b-201;Tmem63b-208;Tmem63b-203;Tmem63b-207,Capn11;Capn11;Tmem63b;Tmem63b;Tmem63b;Tmem63b,-3544;-3572;0;0;3536;23055,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,12,224807,ENSMUSG00000036026,conserved gene and region,17,45662805,45662957,153,*,153,13,0.647058824,0.81583265,0.08496732,2.55E-09,CpGisland,TRUE,NA,NRS
7508,cg09787305,0.00000355,0.00000105,3.381231363,0.000814054,gain,ns,-1.95E-08,0.00000178,-0.010949397,0.991270863,neg,ns,0.001587143,0.000522731,3.036253994,0.002598632,pos,ns,2.58525525,-0.0000407,0.000018,-2.264328352,0.02424444,neg,ns,0.027310083,Zbtb20,Zbtb20_fiveUTR,16,42907637,42907686,42907685,42907686,50,-,GGGAGGCAGGCAGTCATTACCACTCACACTGTACTTCCAGGGAGACACCG,Promoter (<=1kb),16,42907645,43577725,670081,1,Zbtb20-217,0,Zbtb20-209;Zbtb20-210;Zbtb20-211;Zbtb20-217;Zbtb20-218;Zbtb20-204,Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20;Zbtb20,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,8,98,56490,ENSMUSG00000022708,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
24515,cg04025518,-0.0000351,0.00000922,-3.801762879,0.000172984,loss,ns,0.000000171,0.0000157,0.010938473,0.991279572,pos,ns,-0.002319671,0.004590153,-0.505358089,0.613666454,neg,ns,0.212067617,-0.000321764,0.000157855,-2.038351132,0.0423632,neg,ns,0.872832979,Coro1a,Coro1a_Exon,7,126700773,126700822,126700773,126700774,50,-,CGTTTGGGCATGTAGCCCATGCCCCGCTGGGACTCCTTGGAACTGAACAT,"Exon (Coro1a-202/Coro1a, exon 8 of 11)",7,126699773,126704220,4448,2,Coro1a-202,3398,Bola2-204;Bola2-203;Bola2-201;Bola2-202;Bola2-205;Coro1a-202;Coro1a-201;Coro1a-209;Coro1a-206;Coro1a-211;Coro1a-203;Coro1a-212;Coro1a-208;Coro1a-205;Coro1a-207;Coro1a-210;Coro1a-204;Slx1b-203,Bola2;Bola2;Bola2;Bola2;Bola2;Coro1a;Coro1a;Coro1a;Coro1a;Coro1a;Coro1a;Coro1a;Coro1a;Coro1a;Coro1a;Coro1a;Coro1a;Slx1b,5372;5337;4807;4800;4770;0;0;0;0;0;1273;2352;1650;3932;3725;6965;3931;-4989,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,12721,ENSMUSG00000030707,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
22365,cg05006042,-0.0000036,0.00000372,-0.967223236,0.33418642,loss,ns,0.000000068,0.00000633,0.010752689,0.991427678,pos,ns,-0.003767952,0.001853141,-2.033278429,0.042875983,neg,ns,1.367785906,0.000108,0.0000637,1.694669339,0.091142408,pos,ns,0.933676754,Slc39a11,Slc39a11_Exon,11,113625301,113625350,113625301,113625302,50,+,CGGCTGAATGAGACCACGGAGACCCAGAGGACCCTCCTCAATGGAGACCT,"Exon (Sstr2-203/Sstr2, exon 2 of 2)",11,113369728,113650071,280344,2,Slc39a11-205,24721,Slc39a11-205;Slc39a11-207;Slc39a11-206;Slc39a11-204;Sstr2-203;Sstr2-202;Sstr2-201,Slc39a11;Slc39a11;Slc39a11;Slc39a11;Sstr2;Sstr2;Sstr2,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,69806,ENSMUSG00000041654,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11989,cg27227731,0.000124936,0.0000134,9.307862464,2.46E-18,gain,yes,0.000000245,0.0000228,0.010724803,0.991449908,pos,ns,0.016225206,0.006680585,2.428710487,0.015720993,pos,ns,1.803520019,-0.00025593,0.000229745,-1.113973466,0.266153519,neg,ns,0.442188038,Slc4a10,Slc4a10_fiveUTR,2,62046522,62046571,62046570,62046571,50,-,GCAATTGCCTCCTGCTTCAGAGCTACCTGATCCGAATACTAAGCAGAGCG,Promoter (<=1kb),2,62046462,62326730,280269,1,Slc4a10-202,60,Slc4a10-202;Slc4a10-206;Slc4a10-201;Slc4a10-203,Slc4a10;Slc4a10;Slc4a10;Slc4a10,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,12,94229,ENSMUSG00000026904,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
15103,cg12739070,-0.00000241,0.00000539,-0.447394975,0.654902351,loss,ns,9.79E-08,0.00000915,0.010702139,0.991467976,pos,ns,0.002364486,0.002680732,0.882030059,0.378443949,pos,ns,0.421998434,-0.000125688,0.0000922,-1.363352352,0.173760794,neg,ns,0.899011198,Zfp827,Zfp827_Exon,8,79180153,79180202,79180153,79180154,50,+,CGACTTCGTCACCATGGAGGAAGCAGAGATAAAGACTCACATTGGCACCA,"Exon (Zfp827-202/Zfp827, exon 11 of 15)",8,79028437,79193743,165307,1,Zfp827-202,151716,Zfp827-202;Zfp827-203;Zfp827-209;Zfp827-206;Zfp827-205;Zfp827-208;Zfp827-207;Zfp827-204,Zfp827;Zfp827;Zfp827;Zfp827;Zfp827;Zfp827;Zfp827;Zfp827,0;0;0;0;0;5968;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,28,622675,ENSMUSG00000071064,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20533,cg11841094,-0.00000247,0.0000178,-0.138268887,0.890117685,loss,ns,-0.000000322,0.0000303,-0.010633187,0.991522944,neg,ns,0.008772726,0.008880373,0.987878173,0.323982732,pos,ns,0.489478137,0.0000308,0.000305395,0.100735231,0.919825761,pos,ns,0.560980893,Gpr84,Gpr84_Exon,15,103309080,103309129,103309128,103309129,50,-,CCAAGCACAAAGTAGATGCCCATGAGGATGGTGGTGTAAGGCCGGCCTCG,"Exon (Gpr84-201/Gpr84, exon 2 of 2)",15,103308235,103310612,2378,2,Gpr84-201,1483,Gpr84-201;Zfp385a-202;Zfp385a-201;Zfp385a-203,Gpr84;Zfp385a;Zfp385a;Zfp385a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,5,80910,ENSMUSG00000063234,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U4,Pr-F
10054,cg24083420,-0.00000223,0.00000209,-1.068522916,0.286116039,loss,ns,-3.76E-08,0.00000354,-0.010614069,0.991538184,neg,ns,0.000613911,0.001037731,0.591590044,0.554556296,pos,ns,0.25605436,0.00000808,0.0000357,0.226526183,0.820941492,pos,ns,0.059615765,Maml3,Maml3_fiveUTR,3,52104650,52104699,52104698,52104699,50,+,GCTTGCTTATTGCATTTTCCTTCCACAAAAAAGTTTTGGTGTTTATGCCG,Promoter (<=1kb),3,51685907,52105076,419170,2,Maml3-202,377,Maml3-202,Maml3,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,14,32,433586,ENSMUSG00000061143,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
11699,cg16392817,0.0000955,0.0000098,9.744870495,9.51E-20,gain,yes,0.000000176,0.0000167,0.010570065,0.991573265,pos,ns,-0.001235934,0.00487918,-0.253307772,0.800198293,neg,ns,0.096802379,0.0000449,0.000167795,0.267741573,0.7890763,pos,ns,0.466107535,Gas1,Gas1_Intergenic_downstream,13,60133736,60133785,60133784,60133785,50,+,TTAACATATTTATGACCCCAGCTTTCTCTCTGTTCTCTGAGACTGTACCG,Distal Intergenic,13,60175787,60176941,1155,2,Gas1-202,43156,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,10,14451,ENSMUSG00000052957,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1961,cg22962079,-0.0000383,0.00000601,-6.370646443,6.79E-10,loss,yes,-0.000000108,0.0000102,-0.010568657,0.991574387,neg,ns,-0.001644881,0.002991122,-0.549921244,0.582769371,neg,ns,0.234503282,-0.0000475,0.000102864,-0.461475585,0.644781072,neg,ns,0.902675052,Tfec,Tfec_Intergenic_downstream,6,16607501,16607550,16607501,16607502,50,-,CGGCACAGCTTCCAGGAATGAGCCCGAACTGCCAACTGACAATGACAGAG,Distal Intergenic,6,16834692,16835263,572,2,Tfec-204,227762,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,19,23,21426,ENSMUSG00000029553,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
25214,cg05402195,0.0000168,0.00000497,3.385102031,0.000803067,gain,ns,8.92E-08,0.00000844,0.010561513,0.991580082,pos,ns,0.018656654,0.002473475,7.542690307,5.14E-13,pos,yes,12.28902659,-0.000245437,0.0000851,-2.885374915,0.004183626,neg,ns,0.054024266,Arid1a,Arid1a_Intron,4,133729860,133729909,133729860,133729861,50,-,CGTAATCTCTGGCCATGAAGCTGGCTGCCTGGGAGGACTTGGACTGGCGC,"Intron (Arid1a-202/Arid1a, intron 1 of 19)",4,133679008,133753611,74604,2,Arid1a-202,23702,Arid1a-202;Arid1a-205;Arid1a-201;Arid1a-203,Arid1a;Arid1a;Arid1a;Arid1a,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,31,93760,ENSMUSG00000007880,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U5,En-Sd
1747,cg17630580,-0.00000738,0.00000303,-2.433650173,0.015512163,loss,ns,-5.37E-08,0.00000515,-0.01041797,0.991694514,neg,ns,-0.0000123,0.001510183,-0.008164643,0.993490882,neg,ns,0.002836115,-0.0000471,0.0000519,-0.906577707,0.365334277,neg,ns,0.937938835,Gm5513,Gm5513_Intergenic_upstream,19,15058022,15058071,15058022,15058023,50,-,CGTTACCAGGGCAACAAAATACAGTGAGCCCTATACATCTAACAGGTGAC,Distal Intergenic,19,14959549,14960766,1218,2,Gm5513-201,-97305,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,6,22,433225,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
17301,cg00068326,-0.00000701,0.00000213,-3.281521275,0.001150271,loss,ns,-3.75E-08,0.00000363,-0.010351823,0.991747246,neg,ns,-0.000571169,0.001062502,-0.537569986,0.591259632,neg,ns,0.228221771,0.0000115,0.0000365,0.315902115,0.752289387,pos,ns,0.949662293,Prss23,Prss23_Exon,7,89510139,89510188,89510139,89510140,50,+,CGATGTCATTGGCATTGCCCTTGATCCAACCCTTGGGCACATGGGTGCGT,"Exon (Prss23os-202/Prss23os-202, exon 1 of 1)",7,89507783,89517586,9804,2,Prss23-201,7398,Prss23-201;Prss23-204;Prss23-208;Prss23-205;Prss23-203;Prss23-206;Prss23-202;Prss23-207,Prss23;Prss23;Prss23;Prss23;Prss23;Prss23;Prss23;Prss23,0;0;7682;8005;7993;7328;7733;8360,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,76453,ENSMUSG00000039405,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2890,cg15855923,0.0000017,0.000000634,2.686325294,0.007613704,gain,ns,-1.09E-08,0.00000108,-0.010141679,0.991914773,neg,ns,-0.00011143,0.000315463,-0.353227935,0.724157643,neg,ns,0.140166881,0.00000411,0.0000108,0.379216623,0.704786626,pos,ns,0.988830887,Elavl3,Elavl3_Exon,9,22018822,22018871,22018870,22018871,50,+,ATCGGCGAGAACCTGGCGATGAGCGACAGGGGACTACTTTGGGGGTCACG,"Exon (Elavl3-201/Elavl3, exon 7 of 7)",9,22015005,22052010,37006,2,Elavl3-201,33139,Elavl3-201;Elavl3-202;Elavl3-203;Prkcsh-205;Prkcsh-201;Prkcsh-202,Elavl3;Elavl3;Elavl3;Prkcsh;Prkcsh;Prkcsh,0;0;33152;16016;15804;15756,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,5,15571,ENSMUSG00000003410,conserved gene but different region,9,22018547,22018903,357,*,357,26,0.62464986,0.746621622,0.072829132,1.72E-16,CpGisland,TRUE,U11,Tr-P
9569,cg07301351,0.00000679,0.00000281,2.418858984,0.016144909,gain,ns,-4.83E-08,0.00000477,-0.010128806,0.991925035,neg,ns,0.001882912,0.001397329,1.347507809,0.178800751,pos,ns,0.747630661,-0.0000781,0.0000481,-1.625627283,0.105045108,neg,ns,0.931338404,Bicd2,Bicd2_Exon,13,49383298,49383347,49383298,49383299,50,-,CGGGCTGGCCAACCAGGTGTTCTGCAGCGAGAAGCACAGCATTTACTGTG,"Exon (Bicd2-201/Bicd2, exon 7 of 7)",13,49341585,49387019,45435,1,Bicd2-201,41713,Bicd2-201;Bicd2-202;Bicd2-203;Bicd2-204,Bicd2;Bicd2;Bicd2;Bicd2,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,3,76895,ENSMUSG00000037933,conserved gene and region,13,49383049,49383483,435,*,435,29,0.634482759,0.662413359,0.066666667,2.98E-17,CpGisland,TRUE,U10,Tr-S
11249,cg03829928,-0.00000291,0.00000612,-0.47474409,0.635303657,loss,ns,0.000000103,0.0000104,0.009862467,0.992137361,pos,ns,-0.002010451,0.003047336,-0.65974036,0.509910298,neg,ns,0.292506217,0.000056,0.000104798,0.534738452,0.593214052,pos,ns,0.068493485,Nr4a2,Nr4a2_Promoter,2,57123278,57123327,57123278,57123279,50,+,CGCCATTAACTTGAGACTTAGAGTCTATCTACCAGGACGGATGGAAGCTT,Promoter (<=1kb),2,57106830,57124003,17174,2,Nr4a2-203,676,Nr4a2-203;Nr4a2-206,Nr4a2;Nr4a2,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,2,25,18227,ENSMUSG00000026826,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
23487,cg09216664,2.95E-08,0.00000215,0.013726257,0.989057204,gain,ns,3.58E-08,0.00000366,0.00980432,0.992183716,pos,ns,-0.000397334,0.001070865,-0.371040275,0.710860968,neg,ns,0.148215331,0.0000118,0.0000368,0.320118587,0.749094089,pos,ns,0.962823962,Cacna1c,Cacna1c_Exon,6,118637738,118637787,118637738,118637739,50,+,CGGTGATTGCTATATCAACAATGCTACCCACAACAATCAAGGCGTCAAAT,"Exon (Cacna1c-225/Cacna1c, exon 27 of 43)",6,118587240,119196231,608992,2,Cacna1c-207,558444,Cacna1c-207;Cacna1c-205;Cacna1c-215;Cacna1c-224;Cacna1c-225;Cacna1c-226;Cacna1c-227;Cacna1c-202;Cacna1c-201;Cacna1c-203;Cacna1c-212;Cacna1c-216;Cacna1c-210;Cacna1c-206;Cacna1c-208;Cacna1c-213;Cacna1c-217;Cacna1c-219;Cacna1c-220;Cacna1c-209;Cacna1c-204;Cacna1c-214;Cacna1c-222,Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c;Cacna1c,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,13,15,12288,ENSMUSG00000051331,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9453,cg13308695,0.0000565,0.00000734,7.690031871,1.97E-13,gain,yes,0.00000012,0.0000125,0.009642401,0.992312798,pos,ns,0.005887388,0.003655285,1.610650662,0.108273594,pos,ns,0.965477447,-0.0000419,0.000125705,-0.333601663,0.7389057,neg,ns,0.112348004,Csmd3,Csmd3_Exon,15,48791792,48791841,48791840,48791841,50,-,ATTTTCTTCATCAGGATGAAGTCTAGGCGGCCACATTTAGCGCATCTTCG,Promoter (<=1kb),15,47580637,48791933,1211297,2,Csmd3-204,92,Csmd3-204;Csmd3-201;Csmd3-209;Csmd3-205;Csmd3-203,Csmd3;Csmd3;Csmd3;Csmd3;Csmd3,0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,16,239420,ENSMUSG00000022311,conserved gene and region,15,48791819,48792094,276,*,276,17,0.550724638,0.814583333,0.061594203,8.17E-10,CpGisland,TRUE,U13,Hc-P
4130,cg06472065,-0.0000375,0.00000725,-5.167904947,0.000000425,loss,yes,0.000000119,0.0000123,0.009625203,0.992326509,pos,ns,-0.014002292,0.003608635,-3.880218672,0.000127506,neg,ns,3.894469453,0.000174804,0.000124101,1.40856936,0.159964703,pos,ns,0.873523309,Syngap1,Syngap1_Intron,17,26947403,26947452,26947403,26947404,50,+,CGCTTAAAAGGTTTCCATGGGAACAGTGAGGGGAGATGAAGGCAGAGAAC,"Intron (Syngap1-204/Syngap1, intron 3 of 18)",17,26941253,26972434,31182,1,Syngap1-204,6150,Syngap1-204;Syngap1-213;Syngap1-208;Syngap1-202;Syngap1-207;Syngap1-203;Syngap1-201;Syngap1-212,Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1;Syngap1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,18,240057,ENSMUSG00000067629,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
6501,cg01403858,0.00000636,0.00000364,1.748036653,0.08144767,gain,ns,-5.95E-08,0.00000618,-0.009622619,0.992328569,neg,ns,-0.003555756,0.001810644,-1.963807429,0.050445835,neg,ns,1.297174687,0.000155464,0.0000623,2.496701261,0.013054251,pos,ns,0.801393716,Msantd2,Msantd2_Exon,9,37517238,37517287,37517238,37517239,50,-,CGGGTGAAAGAACATGGTGTTGGGAAAAGAAAGAGCAGTTACACATTTGA,"Exon (Msantd2-209/Msantd2, exon 2 of 4)",9,37489021,37524150,35130,1,Msantd2-209,28217,Msantd2-209;Msantd2-204;Msantd2-210;Msantd2-201;Msantd2-202;Msantd2-208;Msantd2-203;Msantd2-206;Msantd2-207,Msantd2;Msantd2;Msantd2;Msantd2;Msantd2;Msantd2;Msantd2;Msantd2;Msantd2,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,8,235184,ENSMUSG00000042138,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
27104,cg04081978,-0.00000571,0.00000267,-2.135210184,0.033527524,loss,ns,4.36E-08,0.00000454,0.009585685,0.992358013,pos,ns,-0.000789293,0.001331248,-0.592897016,0.553682341,neg,ns,0.256739327,-0.000028,0.0000458,-0.61223042,0.540834111,neg,ns,0.93626414,Lrrc7,Lrrc7_Exon,3,158170605,158170654,158170653,158170654,50,-,TCTTTCACAGTTTGCTCCGTGTTAGCAGTTGGATTTGAATTCTCAACACG,"Exon (Lrrc7-206/Lrrc7, exon 16 of 25)",3,158082891,158353433,270543,2,Lrrc7-206,182779,Lrrc7-206;Lrrc7-205;Lrrc7-204;Lrrc7-207;Lrrc7-201,Lrrc7;Lrrc7;Lrrc7;Lrrc7;Lrrc7,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,10,242274,ENSMUSG00000028176,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21609,cg12220518,-0.00000292,0.00000565,-0.516931084,0.605572869,loss,ns,9.18E-08,0.0000096,0.009564739,0.992374711,pos,ns,-0.004392636,0.0028112,-1.562548414,0.119179092,neg,ns,0.923799929,0.0001471,0.0000967,1.521564806,0.129137504,pos,ns,0.793288803,Zfhx3,Zfhx3_Intron,8,108537967,108538016,108537967,108537968,50,+,CGCTACTTTGCAATTTGCATAAATACAGGGTTATTTTTTATCGTGTCGCC,"Intron (Zfhx3-204/Zfhx3, intron 4 of 15)",8,107942644,108961630,1018987,1,Zfhx3-204,595323,Zfhx3-204,Zfhx3,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,114,177,11906,ENSMUSG00000038872,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14422,cg06489241,-0.000000234,0.000000473,-0.494336121,0.621418933,loss,ns,7.61E-09,0.000000804,0.009472068,0.992448589,pos,ns,0.000512765,0.000235492,2.177421508,0.030202999,pos,ns,1.51994993,-0.0000163,0.0000081,-2.012906522,0.04498874,neg,ns,0.016224392,Fam98a,Fam98a_fiveUTR,17,75551755,75551804,75551755,75551756,50,-,CGACTCCAAGATGTCAGTCTCCATGAGGTCACACTCCATGCTACTGTGGT,Promoter (<=1kb),17,75544467,75551796,7330,2,Fam98a-203,0,Fam98a-201;Fam98a-204;Fam98a-205;Fam98a-203,Fam98a;Fam98a;Fam98a;Fam98a,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,6,72722,ENSMUSG00000002017,conserved gene but different region,17,75551476,75551756,281,*,281,23,0.679715303,0.73326526,0.081850534,8.51E-16,CpGisland,TRUE,U1,Pr-A
7396,cg03738778,-0.0000123,0.00000417,-2.95572148,0.003358677,loss,ns,6.64E-08,0.00000709,0.009372865,0.992527674,pos,ns,-0.002694551,0.002075921,-1.298002659,0.195251331,neg,ns,0.709405996,0.000141245,0.0000714,1.978471195,0.04876051,pos,ns,0.906935629,Pou3f3,Pou3f3_Intergenic_upstream,1,42540345,42540394,42540345,42540346,50,-,CGCTACCGATTTAGTGGAATGCAATTAGGAAGCCTAAATTAAGTGGTAAT,Distal Intergenic,1,42694925,42703176,8252,1,Pou3f3-202,-154580,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,10,37,18993,ENSMUSG00000045515,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
7305,cg04767647,-0.000028,0.00000937,-2.990462236,0.003008797,loss,ns,0.000000148,0.0000159,0.009274872,0.992605795,pos,ns,-0.004592513,0.00466108,-0.985289434,0.325250293,neg,ns,0.487782304,0.000143791,0.000160294,0.897045725,0.370390625,pos,ns,0.615167036,Gm8176,Gm8176_Intergenic_upstream,1,42242857,42242906,42242905,42242906,50,-,ATTTGCCTATGCAATGCCTGTTTACGGGTCGCTGATGGAACATGGAGACG,Distal Intergenic,1,42179290,42180388,1099,2,Gm8176-201,-62518,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,13,17,666582,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21370,cg17922423,-0.0000307,0.0000113,-2.724385444,0.006807704,loss,ns,0.000000177,0.0000191,0.009266495,0.992612473,pos,ns,-0.014864397,0.005602105,-2.653359034,0.008380233,neg,ns,2.076743925,-0.0000475,0.000192656,-0.246346762,0.805576853,neg,ns,0.662761581,Cacna2d2,Cacna2d2_Intron,9,107507127,107507176,107507127,107507128,50,-,CGTGGCTCCCAGAGAAGTTGCTAAAATTAAAGCTGGAATCTGAAATTCAA,"Intron (Cacna2d2-201/Cacna2d2, intron 5 of 37)",9,107399612,107529343,129732,1,Cacna2d2-201,107515,Cacna2d2-201;Cacna2d2-205;Cacna2d2-202;Cacna2d2-203;Cacna2d2-204;Cacna2d2-208;Cacna2d2-207;Cacna2d2-209,Cacna2d2;Cacna2d2;Cacna2d2;Cacna2d2;Cacna2d2;Cacna2d2;Cacna2d2;Cacna2d2,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,10,18,56808,ENSMUSG00000010066,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
12689,cg11632659,0.0000791,0.000013,6.060640562,3.93E-09,gain,yes,0.000000205,0.0000222,0.009244351,0.992630126,pos,ns,0.023705921,0.006495045,3.649846989,0.000307827,pos,ns,3.511693048,-0.000700459,0.000223364,-3.13595358,0.001877219,neg,ns,0.276207317,Unc80,Unc80_Exon,1,66671587,66671636,66671587,66671588,50,-,CGACAGGTTGAGTGGGAGCCTGCCAGCAATTTGATTGAAGGGGTTTGTTT,"Exon (Unc80-201/Unc80, exon 53 of 65)",1,66468367,66699148,230782,1,Unc80-201,203220,Unc80-201;Unc80-206;Unc80-205,Unc80;Unc80;Unc80,0;0;-2094,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,9,329178,ENSMUSG00000055567,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13977,cg20616336,-0.00000159,0.00000493,-0.323263193,0.746713877,loss,ns,-7.53E-08,0.00000837,-0.008991429,0.992831758,neg,ns,0.004584139,0.002452203,1.869396075,0.062510368,pos,ns,1.204047947,-0.000153101,0.0000843,-1.815475084,0.070417025,neg,ns,0.932942618,Gm13668,Gm13668_Intergenic_upstream,2,73977673,73977722,73977673,73977674,50,+,CGCTGCAATAAAAGGTAAATTGAATTTACAAAGATGCATTTGTCACTGAT,Distal Intergenic,2,73959669,73960669,1001,2,Gm13668-201,-17004,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,18,20,667729,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
12627,cg00548719,-0.00000271,0.00000324,-0.837620556,0.402889152,loss,ns,-4.93E-08,0.0000055,-0.008968834,0.992849771,neg,ns,-0.000394233,0.00161186,-0.244582742,0.806941337,neg,ns,0.093158036,-0.0000278,0.0000554,-0.501072976,0.616675367,neg,ns,0.959675845,Kcnq3,Kcnq3_Exon,15,66005951,66006000,66005951,66005952,50,-,CGATCCAAGAGACCCAGCTTTTGGCTACAAAATAAGCAAAAGTGAACAAT,"Exon (Kcnq3-201/Kcnq3, exon 10 of 15)",15,65986387,66286642,300256,2,Kcnq3-201,280642,Kcnq3-201,Kcnq3,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,4,110862,ENSMUSG00000056258,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3297,cg14430223,-0.0000017,0.0000022,-0.771921546,0.44074894,loss,ns,-3.32E-08,0.00000374,-0.008868537,0.992929729,neg,ns,0.0000799,0.001096129,0.072915076,0.94192072,pos,ns,0.02598565,0.0000321,0.0000377,0.851679205,0.395049602,pos,ns,0.957133046,Gm11889,Gm11889_Intergenic_downstream,4,23512146,23512195,23512146,23512147,50,-,CGCTAATTAATCACTCTGGTATTTAGGACCATTCAAGCAGACAAATTAAT,Distal Intergenic,4,23517362,23518440,1079,2,Gm11889-201,6294,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,7,8,383998,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
5646,cg11013575,-0.00000625,0.00000374,-1.670575462,0.095814815,loss,ns,5.59E-08,0.00000636,0.008781478,0.992999133,pos,ns,-0.002068961,0.001863273,-1.110390994,0.267691116,neg,ns,0.572366042,0.00003,0.0000641,0.467823039,0.640239857,pos,ns,0.941110038,Sox2,Sox2_Intron,3,34465481,34465530,34465481,34465482,50,+,CGTGCAGTGTCAGCAGGTGCATGCCACCAAATTACTGCTTTTAATTTGCA,"Intron (Sox2ot-204/Sox2ot-204, intron 2 of 3)",3,34650405,34652461,2057,1,Sox2-201,-184875,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,34,62,20674,ENSMUSG00000074637,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4867,cg25297923,0.00000418,0.00000203,2.056876548,0.040534578,gain,ns,-3.03E-08,0.00000346,-0.008761005,0.993015454,neg,ns,0.000564333,0.001012217,0.557522034,0.577573157,pos,ns,0.238392999,-0.0000428,0.0000348,-1.230933373,0.219280883,neg,ns,0.945141254,Zbtb44,Zbtb44_Exon,9,31066925,31066974,31066973,31066974,50,-,GAAGCATCAGAGCTAGCAAACTACTTCCAGAGCAGGTGAGGTGCACAACG,"Exon (Zbtb44-206/Zbtb44, exon 4 of 5)",9,31030644,31070233,39590,1,Zbtb44-205,36281,Zbtb44-205;Zbtb44-201;Zbtb44-206;Zbtb44-202;Zbtb44-204,Zbtb44;Zbtb44;Zbtb44;Zbtb44;Zbtb44,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,15,235132,ENSMUSG00000047412,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10593,cg00386499,-0.00000469,0.000007,-0.670018189,0.503344977,loss,ns,0.000000103,0.0000119,0.00869683,0.993066615,pos,ns,-0.002005205,0.003484521,-0.575460817,0.565397148,neg,ns,0.247646387,-0.0000445,0.000119832,-0.371242247,0.710710696,neg,ns,0.63752156,Gm12477,Gm12477_Exon,4,54646631,54646680,54646631,54646632,50,+,CGAGGCTGGCAGAAGCTGAAATTGAAGTGGTCTCTGACCTAATTTTCTTC,"Exon (Gm12478-201/Gm12478-201, exon 1 of 2)",4,54669622,54670192,571,2,Gm12477-201,23512,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,6,100416401,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7737,cg06321313,0.00000698,0.0000045,1.549993145,0.122163428,gain,ns,6.52E-08,0.00000765,0.008517491,0.993209587,pos,ns,-0.002099164,0.002241046,-0.936688988,0.349647702,neg,ns,0.456369322,-0.00000571,0.0000771,-0.074100592,0.940978136,neg,ns,0.907781657,Arhgap15,Arhgap15_Intron,2,44017436,44017485,44017484,44017485,50,+,TGGTTGCAGCCTCAGATTAATGCGAAGACCCTGGCGATTCCTTTTAGACG,"Intron (Arhgap15-203/Arhgap15, intron 6 of 14)",2,43748824,44395953,647130,1,Arhgap15-203,268612,Arhgap15-203;Arhgap15-202;Arhgap15-201,Arhgap15;Arhgap15;Arhgap15,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,72,78,76117,ENSMUSG00000049744,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22400,cg14699045,-0.00000537,0.00000483,-1.112987937,0.266575898,loss,ns,-6.91E-08,0.0000082,-0.008422023,0.993285695,neg,ns,-0.001253821,0.002403087,-0.521754337,0.602213962,neg,ns,0.22024918,-0.00012477,0.0000826,-1.509764319,0.13212213,neg,ns,0.921028488,Sdk2,Sdk2_Intergenic_upstream,11,114202945,114202994,114202993,114202994,50,+,GGATTAGCCTGTAATACTTAGGCGGCTTTTTGTAATAAAACCCTGAGCCG,Distal Intergenic,11,113865600,114067046,201447,2,Sdk2-205,-135899,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,11,237979,ENSMUSG00000041592,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
23104,cg25715832,0.0000705,0.0000106,6.62528492,1.53E-10,gain,yes,0.00000015,0.0000181,0.008270975,0.993406112,pos,ns,0.019025105,0.005297279,3.591485944,0.000382185,pos,ns,3.417726745,-0.000322774,0.000182173,-1.771799612,0.077410121,neg,ns,0.552684156,Rnf220,Rnf220_Intron,4,117302488,117302537,117302536,117302537,50,-,ATTTGGGGAATTGTTTATCTAGTTCATTACCCAACCAAACACCGAGGCCG,"Intron (Rnf220-201/Rnf220, intron 3 of 14)",4,117271463,117497052,225590,2,Rnf220-201,194515,Rnf220-201;Rnf220-202;Rnf220-208;Rnf220-207,Rnf220;Rnf220;Rnf220;Rnf220,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27068,cg15201877,0.0000151,0.00000927,1.626538166,0.104851254,gain,ns,-0.00000013,0.0000158,-0.008243106,0.99342833,neg,ns,0.001214703,0.004615189,0.26319682,0.79257373,pos,ns,0.100960327,0.0000914,0.000158716,0.575904976,0.565097253,pos,ns,0.203205899,Ptger3,Ptger3_Exon,3,157567187,157567236,157567235,157567236,50,+,GGGAGAGCAAGCGCAAGAAGTCCTTCCTGCTGTGCATCGGCTGGCTGGCG,Promoter (<=1kb),3,157566892,157645888,78997,1,Ptger3-201,295,Ptger3-201;Ptger3-203;Ptger3-202,Ptger3;Ptger3;Ptger3,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,19218,ENSMUSG00000040016,conserved gene and region,3,157566762,157567651,890,*,890,96,0.694382023,0.895973154,0.107865169,3.07E-76,CpGisland,TRUE,U3,Pr-B
4730,cg00280963,-0.00000985,0.00000196,-5.02596349,0.000000848,loss,yes,2.74E-08,0.00000333,0.008225053,0.993442722,pos,ns,0.002610464,0.000975168,2.676936919,0.0078253,pos,ns,2.106498978,-0.000121336,0.0000335,-3.618100244,0.000346396,neg,ns,0.954806133,Atp13a3,Atp13a3_Exon,16,30341170,30341219,30341170,30341171,50,+,CGAATGTTGGCTTTATGCAAATCTTCAAGTACTGCAGGGGTTTCTTGCTT,"Exon (Atp13a3-201/Atp13a3, exon 21 of 33)",16,30312423,30388530,76108,2,Atp13a3-201,47311,Atp13a3-201;Atp13a3-202,Atp13a3;Atp13a3,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,224088,ENSMUSG00000022533,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
9505,cg07288292,0.0000603,0.0000173,3.478723606,0.000575928,gain,ns,0.000000241,0.0000294,0.008200809,0.993462049,pos,ns,0.021733923,0.008622727,2.520539221,0.012219249,pos,ns,1.912955497,-0.000520512,0.000296535,-1.755314732,0.080193206,neg,ns,0.479201401,Exoc5,Exoc5_Intergenic_downstream,14,48990686,48990735,48990686,48990687,50,+,CGGCATCAATTGCACAGGCTTCCACTTAGTTTTAGTTGAATAAAAGCCCT,Distal Intergenic,14,49015471,49019792,4322,2,Exoc5-205,29057,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,4,105504,ENSMUSG00000061244,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13652,cg04019669,0.0000336,0.00000469,7.16129797,5.84E-12,gain,yes,6.49E-08,0.00000796,0.00814826,0.993503942,pos,ns,0.004817965,0.002333181,2.064976449,0.039756426,pos,ns,1.400592663,-0.0000235,0.0000802,-0.292591316,0.77003029,neg,ns,0.076311722,Gabrb1,Gabrb1_Exon,5,71700316,71700365,71700316,71700317,50,+,CGTGAAAGAGACAGTGGACAGATTGCTCAAAGGATATGACATTCGCTTGC,"Exon (Gabrb1-202/Gabrb1, exon 3 of 8)",5,71658113,72108779,450667,1,Gabrb1-202,42203,Gabrb1-202;Gabrb1-201,Gabrb1;Gabrb1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,4,14400,ENSMUSG00000029212,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
4188,cg08873407,0.0000212,0.00000574,3.698409235,0.00025656,gain,ns,-0.000000079,0.00000974,-0.008112034,0.993532822,neg,ns,-0.00541165,0.002854725,-1.895681431,0.058932099,neg,ns,1.229648091,0.0000715,0.0000982,0.728217556,0.467030125,pos,ns,0.771917994,Gm7729,Gm7729_Intergenic_upstream,18,27388259,27388308,27388259,27388260,50,+,CGTTTGACATTCAGGGCTAGAAGGTTGCCGGTCTGTAATCACTAGTTAAA,Distal Intergenic,18,27598644,27599756,1113,1,Gm7729-201,-210336,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,11,22,665646,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3653,cg21489980,0.00000108,0.0000011,0.986668059,0.324574854,gain,ns,-0.000000015,0.00000187,-0.008064216,0.993570944,neg,ns,-0.000375796,0.000546752,-0.687323721,0.492392637,neg,ns,0.30768845,0.0000101,0.0000188,0.538813301,0.590402396,pos,ns,0.024627398,Erfl,Erfl_Promoter,7,24948998,24949047,24949046,24949047,50,-,GCGGTGGAATTATGAAAAATAGCAGGCATCGGAGCCGGCCTTCAGCTTCG,Promoter (4-5kb),7,24927445,24944494,17050,2,Erfl-201,-4553,Erfl-201,Erfl,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,29,36,,NA,mapped to different genes,7,24948874,24949205,332,*,332,30,0.545180723,1.304006284,0.090361446,9.36E-22,CpGisland,TRUE,U13,Hc-P
4023,cg03223588,-0.0000107,0.00000797,-1.339140754,0.181505909,loss,ns,-0.000000109,0.0000135,-0.008048394,0.993583557,neg,ns,-0.00554295,0.003967317,-1.397153398,0.163366678,neg,ns,0.786836523,0.0000224,0.000136436,0.163937623,0.86988708,pos,ns,0.673738701,Gm50479,Gm50479_Intergenic_downstream,8,26504591,26504640,26504639,26504640,50,+,CAACAGCCGGTGGATACGCACTGACATTGATGATATTGCTGAATTAAACG,Distal Intergenic,8,26237222,26237407,186,1,Gm50479-201,267369,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,10,21,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23298,cg19455444,-0.00000117,0.00000127,-0.922476444,0.356997504,loss,ns,-1.73E-08,0.00000216,-0.008024614,0.993602514,neg,ns,0.000506284,0.000631354,0.801901649,0.42322412,pos,ns,0.373429589,-0.00000939,0.0000217,-0.43247433,0.665697398,neg,ns,0.968286228,Eri3,Eri3_Intron,4,117664383,117664432,117664431,117664432,50,-,ATTTCACTTTTAATTCTGACATATAATGTAATGATCTTTTTTAAGGCCCG,"Intron (Eri3-201/Eri3, intron 8 of 8)",4,117550365,117674297,123933,1,Eri3-201,114018,Eri3-201;Eri3-206;Eri3-203,Eri3;Eri3;Eri3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,82,97,140546,ENSMUSG00000033423,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
16586,cg16134975,0.0000279,0.00000522,5.33660332,0.000000183,gain,yes,7.12E-08,0.00000887,0.008020031,0.993606169,pos,ns,0.006455265,0.002599404,2.483363622,0.013543244,pos,ns,1.868277289,-0.000152587,0.0000894,-1.70692254,0.088837801,neg,ns,0.091974708,Wnt7b,Wnt7b_Promoter,15,85581050,85581099,85581098,85581099,50,+,GAAGGCGCGTCCCACCCCCGGGGCCTGGAGCCCAAACAGGTGAAAGTACG,Promoter (<=1kb),15,85535437,85581582,46146,2,Wnt7b-202,483,Wnt7b-202;Wnt7b-201;Wnt7b-205;Wnt7b-203;Wnt7b-204,Wnt7b;Wnt7b;Wnt7b;Wnt7b;Wnt7b,0;0;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,1,7,22422,ENSMUSG00000022382,conserved gene and region,15,85580412,85582166,1755,*,1755,201,0.724216524,0.873484578,0.114529915,1.12E-164,CpGisland,TRUE,U3,Pr-B
20422,cg21072342,0.0000174,0.00000204,8.512723896,7.42E-16,gain,yes,-2.77E-08,0.00000346,-0.007990353,0.993629828,neg,ns,-0.0000673,0.001014834,-0.066359552,0.947134348,neg,ns,0.023588414,0.00007,0.0000349,2.006058321,0.045718493,pos,ns,0.030730436,Hoxc4,Hoxc4_Exon,15,103034895,103034944,103034895,103034896,50,+,CGCGCCCTAGCTACCCTGAGCGCCAGTATAGCTGCACCAGTCTCCAGGGG,"Exon (Hoxc4-202/Hoxc4, exon 2 of 4)",15,103018934,103036405,17472,1,Hoxc4-202,15961,Hoxc4-202;Hoxc4-201,Hoxc4;Hoxc4,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,12,91,15423,ENSMUSG00000075394,conserved gene and region,15,103034736,103035107,372,*,372,27,0.626344086,0.794494542,0.072580645,4.60E-17,CpGisland,TRUE,NA,NRS
20733,cg16011371,-0.00000508,0.00000262,-1.941551963,0.053097228,loss,ns,-0.000000035,0.00000444,-0.007868129,0.993727267,neg,ns,-0.000764171,0.001301933,-0.586951181,0.557663702,neg,ns,0.253627623,-0.000000908,0.0000448,-0.020272976,0.983838655,neg,ns,0.941267064,Dab1,Dab1_threeUTR,4,104727738,104727787,104727738,104727739,50,+,CGGGCAGTTTCCGCCAGCCGCCTTCATGCCCACACAAACTGTTATGCCTT,3' UTR,4,104367590,104741797,374208,1,Dab1-207,360148,Dab1-207;Dab1-203,Dab1;Dab1,0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,13,13131,ENSMUSG00000028519,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
20649,cg00009248,-0.0000203,0.00000667,-3.04831315,0.002499514,loss,ns,-8.88E-08,0.0000113,-0.007840468,0.993749319,neg,ns,0.003939768,0.003319774,1.186757912,0.236231786,pos,ns,0.626661667,0.000017,0.000114167,0.148910762,0.881720872,pos,ns,0.871303921,Mapt,Mapt_Exon,11,104318144,104318193,104318192,104318193,50,+,CTGGCTACCAAAGGTGCAGATAATTAATAAGAAGCTGGATCTTAGCAACG,"Exon (Mapt-204/Mapt, exon 7 of 10)",11,104231390,104332090,100701,1,Mapt-204,86754,Mapt-204;Mapt-205;Mapt-201;Mapt-202;Mapt-203;Mapt-210;Mapt-206,Mapt;Mapt;Mapt;Mapt;Mapt;Mapt;Mapt,0;0;0;0;0;0;-3756,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,17762,ENSMUSG00000018411,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
16593,cg01079812,0.0000211,0.00000473,4.459453981,0.0000115,gain,ns,6.29E-08,0.00000804,0.007826733,0.993760269,pos,ns,0.004091419,0.002355626,1.736871481,0.083403181,pos,ns,1.078817385,-0.0000679,0.000081,-0.838321337,0.402496169,neg,ns,0.073491562,Six3,Six3_Intron,17,85618562,85618611,85618610,85618611,50,+,GTCACGAGCTGCTTTCAAAAAGTTGAACACAATATTCGGAAACCCACCCG,"Intron (Six3-202/Six3, intron 1 of 2)",17,85613608,85625222,11615,1,Six3-202,4954,Six3-202;Six3-203;Six3-201,Six3;Six3;Six3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,24,20473,ENSMUSG00000038805,mapped to different genes,17,85618467,85618636,170,*,170,15,0.652941177,0.831160365,0.088235294,6.13E-11,CpGisland,TRUE,U13,Hc-P
6571,cg10699917,0.0000536,0.00000861,6.223416081,1.58E-09,gain,yes,0.000000114,0.0000146,0.007784057,0.993794291,pos,ns,0.009234265,0.004284396,2.155324773,0.031906,pos,ns,1.496127633,-0.000221039,0.00014734,-1.50019469,0.134581725,neg,ns,0.052170896,Zfp536,Zfp536_fiveUTR,7,37769843,37769892,37769843,37769844,50,-,CGGTAATGTCCACTTTCCTGGCGACCCTCCGTGCGTGGGTTTACTATTTC,Promoter (<=1kb),7,37479109,37769962,290854,2,Zfp536-201,70,Zfp536-202;Zfp536-201;Zfp536-203;Zfp536-206;Zfp536-209;Zfp536-208;Zfp536-205;Zfp536-207;Zfp536-210,Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536,0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,6,112,243937,ENSMUSG00000043456,conserved gene but different region,7,37769706,37769937,232,*,232,22,0.620689655,0.984757862,0.094827586,1.49E-16,CpGisland,TRUE,U13,Hc-P
20121,cg13477804,0.0000457,0.0000074,6.181092572,0.000000002,gain,yes,-9.69E-08,0.0000126,-0.00771018,0.993853187,neg,ns,0.009798001,0.003682745,2.66051577,0.008208163,pos,ns,2.085754002,-0.00023233,0.000126649,-1.834436468,0.067547495,neg,ns,0.059368359,Atp5g2,Atp5g2_Promoter,15,102672362,102672411,102672410,102672411,50,-,TACAGGAATGTAATTTTGCCCGGATGAGGCCCCGAGTTTAATTATCCTCG,Promoter (<=1kb),15,102665801,102672352,6552,2,Atp5g2-203,-59,Atp5g2-202;Atp5g2-201;Atp5g2-204;Atp5g2-203,Atp5g2;Atp5g2;Atp5g2;Atp5g2,-1235;-4613;-4619;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,10,18,67942,ENSMUSG00000062683,mapped to different genes,15,102672078,102672489,412,*,412,37,0.621359223,0.940117176,0.089805825,1.33E-26,CpGisland,TRUE,U1,Pr-A
12358,cg06562535,-0.0000139,0.00000387,-3.589302469,0.00038527,loss,ns,-5.07E-08,0.00000658,-0.007706477,0.993856139,neg,ns,-0.00126668,0.001927893,-0.657028146,0.511650298,neg,ns,0.291026768,-0.0000749,0.0000663,-1.129591662,0.259521618,neg,ns,0.062144049,Smad6,Smad6_fiveUTR,9,64022019,64022068,64022019,64022020,50,+,CGCCGCGGAGTCATTGGCTGCCTCCCATCATATGCCAGTCTAGACACTTT,Promoter (<=1kb),9,63953076,64022059,68984,2,Smad6-201,0,Smad6-201;Smad6-203,Smad6;Smad6,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,9,19,17130,ENSMUSG00000036867,conserved gene and region,9,64021777,64022025,249,*,249,28,0.710843374,0.91833509,0.112449799,3.74E-23,CpGisland,TRUE,NA,NRS
944,cg12382407,-0.0000181,0.0000145,-1.252429386,0.211357455,loss,ns,-0.00000019,0.0000246,-0.007699145,0.993861984,neg,ns,-0.017424357,0.007210976,-2.416365869,0.016253777,neg,ns,1.789045715,0.000504012,0.000247985,2.032432091,0.042962048,pos,ns,0.559586468,Gata3,Gata3_Promoter,2,9897956,9898005,9898004,9898005,50,+,ACTCATTTCTCTCTTGCTAGATGGGGACTCTGATGGTTACCGAGGCAACG,Promoter (7-8kb),2,9874702,9890034,15333,2,Gata3-202,-7922,NA,NA,NA,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,12,21,14462,ENSMUSG00000015619,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
2023,cg10209320,0.00000625,0.00000413,1.514220574,0.130988787,gain,ns,5.37E-08,0.00000702,0.00765161,0.99389988,pos,ns,0.003559023,0.002055769,1.731236897,0.084404456,pos,ns,1.073634622,-0.000143275,0.0000707,-2.026591033,0.04356004,neg,ns,0.924638408,Pi4ka,Pi4ka_Exon,16,17322996,17323045,17323044,17323045,50,+,TCTTTCTGAATAGCTTTATCCTCAAAGTAGCAGAACATTACCTGGAAGCG,"Exon (Pi4ka-201/Pi4ka, exon 23 of 55)",16,17280351,17406314,125964,2,Pi4ka-201,83269,Pi4ka-201;Pi4ka-209;Pi4ka-204;Pi4ka-210;Pi4ka-208,Pi4ka;Pi4ka;Pi4ka;Pi4ka;Pi4ka,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,224020,ENSMUSG00000041720,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18067,cg24918496,-5.82E-09,0.000000973,-0.005980237,0.995232336,loss,ns,1.26E-08,0.00000165,0.007626085,0.993920229,pos,ns,0.000619783,0.000484464,1.279315155,0.201742813,pos,ns,0.695201928,-0.0000181,0.0000167,-1.086797931,0.277970432,neg,ns,0.973517253,Lta4h,Lta4h_Exon,10,93482277,93482326,93482277,93482278,50,-,CGAATGCAAGAGGTGTACAACTTCAATGCCATTAACAATTCTGAAATACG,"Exon (Lta4h-201/Lta4h, exon 17 of 19)",10,93453411,93484874,31464,1,Lta4h-201,28866,Lta4h-201;Lta4h-202;Lta4h-207;Lta4h-208,Lta4h;Lta4h;Lta4h;Lta4h,0;0;0;-145,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,2,16993,ENSMUSG00000015889,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
22350,cg07758484,0.00000988,0.00000471,2.096357474,0.036860823,gain,ns,-6.05E-08,0.00000801,-0.0075607,0.993972355,neg,ns,-0.00444526,0.002345529,-1.89520604,0.058995264,neg,ns,1.22918285,0.0000314,0.0000807,0.388892746,0.697622465,pos,ns,0.871266152,Dach2,Dach2_Intron,X,113338256,113338305,113338256,113338257,50,+,CGTATGAGTTCCATTTGCCTATAGTAAATAGAATGTCAGACGTGTCAGGG,"Intron (Dach2-204/Dach2, intron 2 of 15)",20,113297510,113836386,538877,1,Dach2-204,40746,Dach2-204;Dach2-203;Dach2-202;Dach2-208;Dach2-205;Dach2-201;Dach2-207,Dach2;Dach2;Dach2;Dach2;Dach2;Dach2;Dach2,0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,4,93837,ENSMUSG00000025592,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
13310,cg16748567,-0.00000019,0.00000104,-0.182998857,0.85491854,loss,ns,1.33E-08,0.00000177,0.007546804,0.993983433,pos,ns,-0.000603251,0.000517213,-1.166349181,0.244369796,neg,ns,0.611952473,0.0000133,0.0000178,0.74755908,0.455292831,pos,ns,0.035724817,Egr3,Egr3_Promoter,14,70076828,70076877,70076876,70076877,50,-,CTGGGCTTTGTCTGTCCATATATGGGCAGCTACGTCACGGAGCTTTCCCG,Promoter (<=1kb),14,70077203,70079955,2753,1,Egr3-201,-375,Egr3-201;Egr3-204;Egr3-203;Egr3-202,Egr3;Egr3;Egr3;Egr3,0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,10,19,13655,ENSMUSG00000033730,conserved gene and region,14,70076812,70076877,66,*,66,7,0.621212121,1.105263158,0.106060606,0.00000889,CpGisland,TRUE,U3,Pr-B
25096,cg14121771,0.0000489,0.00000657,7.431875181,1.05E-12,gain,yes,8.29E-08,0.0000112,0.007424319,0.99408108,pos,ns,0.002660294,0.003272219,0.812993656,0.416845631,pos,ns,0.380024746,0.000473716,0.000112531,4.209639672,0.0000335,pos,ns,0.736097212,Npnt,Npnt_fiveUTR,3,132909929,132909978,132909929,132909930,50,-,CGTTGAGACAGTAGCACTTGTAGCTGCCGTAAGTGTTCATGCACCTGTGC,5' UTR,3,132881745,132950291,68547,2,Npnt-202,40313,Npnt-202;Npnt-206;Npnt-201;Npnt-205;Npnt-203;Npnt-204;Npnt-207,Npnt;Npnt;Npnt;Npnt;Npnt;Npnt;Npnt,0;0;0;0;0;0;-3570,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,2,114249,ENSMUSG00000040998,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13049,cg16911529,-0.000000332,0.000000393,-0.844855827,0.398842897,loss,ns,4.95E-09,0.000000668,0.007410513,0.994092087,pos,ns,-0.000251266,0.000195766,-1.283499156,0.200275851,neg,ns,0.698371415,0.00000794,0.00000673,1.178759518,0.239397907,pos,ns,0.987627941,Chd3,Chd3_Exon,11,69345522,69345571,69345570,69345571,50,+,GCGCTCGGACATCTGAAGGCGGGCTGCGATGGGGGGTATTCGGGACAGCG,Promoter (<=1kb),11,69343273,69346019,2747,2,Chd3-205,448,Chd3-205;Chd3-203;Chd3-202;Chd3-211;Chd3-201;Chd3-204;Chd3-208;Rnf227-201;Rnf227-203;Rnf227-202,Chd3;Chd3;Chd3;Chd3;Chd3;Chd3;Chd3;Rnf227;Rnf227;Rnf227,0;0;0;0;0;0;0;5061;4751;4713,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,22,26,216848,ENSMUSG00000018474,conserved gene but different region,11,69345353,69345644,292,*,292,17,0.609589041,0.656613757,0.058219178,1.94E-09,CpGisland,TRUE,U10,Tr-S
10241,cg01950723,0.0000536,0.00000437,12.24283463,2.22E-28,gain,yes,-5.48E-08,0.00000743,-0.007380416,0.99411608,neg,ns,0.00436798,0.00217718,2.006255367,0.045697356,pos,ns,1.340108926,0.0000778,0.0000749,1.038760816,0.299725509,pos,ns,0.112831718,Hoxa13,Hoxa13_fiveUTR,6,52260784,52260833,52260784,52260785,50,+,CGCATGGAGAAGACCCCAGTGGCGCTGTTTTAAAAAGCCCCCAAGAAGTG,Promoter (<=1kb),6,52257694,52260803,3110,2,Hoxa13-203,0,Hoxa13-203;Hoxa13-201;Hoxa13-202;Hoxa13-204;Hoxa13-205;Hoxa13-206,Hoxa13;Hoxa13;Hoxa13;Hoxa13;Hoxa13;Hoxa13,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,3,12,15398,ENSMUSG00000038203,mapped to different genes,6,52259987,52261198,1212,*,1212,176,0.764026403,1.001121681,0.145214522,1.45E-165,CpGisland,TRUE,U3,Pr-B
9714,cg14629337,-0.0000179,0.00000638,-2.80414098,0.005363386,loss,ns,-7.99E-08,0.0000108,-0.007374434,0.99412085,neg,ns,0.000098,0.003173994,0.030885142,0.975381014,pos,ns,0.010825702,-0.0002063,0.000109153,-1.89000471,0.059690062,neg,ns,0.892426346,Gm7481,Gm7481_Intergenic_upstream,12,50195230,50195279,50195230,50195231,50,+,CGGTAATCAGAGGAAAACAAAATAGATAAAATGTTTTCTGCACAAATCAC,Distal Intergenic,12,49840757,49841751,995,2,Gm7481-201,-353479,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,27,37,665077,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
4804,cg13023398,-0.0000289,0.00000732,-3.944332045,0.000099,loss,ns,9.07E-08,0.0000124,0.007296332,0.994183114,pos,ns,-0.003799708,0.003642834,-1.043063536,0.297731593,neg,ns,0.526175079,0.00000377,0.000125277,0.030072575,0.976028524,pos,ns,0.896246349,Prkg1,Prkg1_Exon,19,30624692,30624741,30624692,30624693,50,-,CGTCCGAAACCTCCAACTCCAAGGGTATCAATGATGTTGAAATCAGACAG,"Exon (Prkg1-201/Prkg1, exon 10 of 18)",19,30564489,31765033,1200545,2,Prkg1-201,1140292,Prkg1-201;Prkg1-208;Prkg1-202;Prkg1-205,Prkg1;Prkg1;Prkg1;Prkg1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,13,19091,ENSMUSG00000052920,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
19517,cg10609096,-0.00000769,0.0000023,-3.349235172,0.000910389,loss,ns,-2.84E-08,0.0000039,-0.007284934,0.994192201,neg,ns,-0.004018891,0.001142754,-3.516846073,0.000501961,neg,ns,3.299330287,0.000111905,0.0000393,2.84750259,0.004700592,pos,ns,0.930427092,Armc8,Armc8_threeUTR,9,99520419,99520468,99520467,99520468,50,-,TTTCAGGTTGACGTCACTCCCTGCCTGCTGGCTGTCAGGACTGGGGGACG,3' UTR,9,99478372,99568899,90528,2,Armc8-201,48431,Armc8-201;Armc8-202;Armc8-203,Armc8;Armc8;Armc8,0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,2,10,74125,ENSMUSG00000032468,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20332,cg25762966,0.0000312,0.00000688,4.540019651,0.00000806,gain,ns,8.32E-08,0.0000117,0.007117295,0.994325846,pos,ns,0.002594225,0.003422964,0.757888441,0.449093511,pos,ns,0.34766322,-0.000188763,0.000117715,-1.603554499,0.109830611,neg,ns,0.11280144,Hoxc5,Hoxc5_Intron,15,103008023,103008072,103008023,103008024,50,+,CGTTTATGGCTTTATTGCTACCCATTGATTACTCCGCTTTGTTACACAGA,"Intron (Hoxc5-202/Hoxc5, intron 1 of 1)",15,102967443,103015676,48234,1,Hoxc5-202,40580,Hoxc5-202;Hoxc6-202;Hoxc6-203;Hoxc6-201,Hoxc5;Hoxc6;Hoxc6;Hoxc6,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,46,134,15424,ENSMUSG00000022485,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
6635,cg14070544,-0.0000276,0.00000853,-3.239923022,0.001325482,loss,ns,0.000000101,0.0000145,0.006971382,0.994442171,pos,ns,-0.004343993,0.004243938,-1.023575892,0.306833712,neg,ns,0.513096926,0.000116881,0.000145949,0.800839074,0.423838156,pos,ns,0.835675074,Uri1,Uri1_Intergenic_downstream,7,37887160,37887209,37887160,37887161,50,-,CGTGGTTTCAAATATATTTTGCAAACTAGGACTCAGACAAATATTAATGG,Distal Intergenic,7,37961301,37962528,1228,2,Uri1-203,75368,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,19,27,19777,ENSMUSG00000030421,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
7125,cg21401000,-0.000000736,0.00000329,-0.223254126,0.823484769,loss,ns,3.87E-08,0.0000056,0.006918458,0.994484363,pos,ns,0.003921595,0.001639928,2.391320718,0.017383911,pos,ns,1.759852515,-0.0000616,0.0000564,-1.093025751,0.275231145,neg,ns,0.937114035,Gm5973,Gm5973_Intergenic_upstream,1,41122051,41122100,41122051,41122052,50,+,CGCTGAACTGAGGTTGTAAAGAATTCATTAATATTAAAATTAGCCCCAAC,Distal Intergenic,1,40863737,40864232,496,2,Gm5973-201,-257819,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,18,18,546733,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
22397,cg06288368,0.00000303,0.00000311,0.974726253,0.330456046,gain,ns,3.64E-08,0.00000529,0.0068795,0.994515422,pos,ns,-0.000973667,0.001549056,-0.628555342,0.530103037,neg,ns,0.275639707,-0.00000117,0.0000533,-0.02200249,0.982460124,neg,ns,0.950836686,Sdk2,Sdk2_Intergenic_upstream,11,114202915,114202964,114202915,114202916,50,-,CGTCACATATTTTACTAGGCTGGGATTTACGGATTAGCCTGTAATACTTA,Distal Intergenic,11,113865600,114067046,201447,2,Sdk2-205,-135918,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,5,11,237979,ENSMUSG00000041592,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1492,cg15451672,-0.0000104,0.00000411,-2.52054193,0.012219157,loss,ns,-4.79E-08,0.00000699,-0.006855056,0.994534909,neg,ns,-0.002197904,0.002047748,-1.073327622,0.283958929,neg,ns,0.546744471,0.000108017,0.0000704,1.533850544,0.126086334,pos,ns,0.937500805,Gm11819,Gm11819_Intergenic_upstream,4,13248602,13248651,13248650,13248651,50,+,GGGACTCAGTGTGGCCACTGCAATATAACCAGTAAGTAACACACGCAGCG,Distal Intergenic,4,13444770,13445141,372,1,Gm11819-201,-196119,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,19,22,,NA,mapped to different genes,4,13248547,13248714,168,*,168,12,0.535714286,0.997525977,0.071428571,8.86E-08,CpGisland,TRUE,U15,NS
376,cg21743182.2,0.0000322,0.00000848,3.799185036,0.000174712,gain,ns,9.84E-08,0.0000144,0.006825635,0.994558364,pos,ns,0.003217492,0.004221438,0.762179242,0.446532537,pos,ns,0.35014689,0.000148601,0.000145175,1.023598968,0.306822825,pos,ns,0.654781215,Cdk14,Cdk14_fiveUTR,5,5265671,5265720,5265719,5265720,50,-,GCAACTGAATTCACATCTTTCTGCACTAGCAAGCTGAAATGGTACGGCCG,Promoter (<=1kb),5,4803391,5266068,462678,2,Cdk14-203,348,Cdk14-203;Cdk14-201;Cdk14-202;Cdk14-204;Cdk14-207;Cdk14-208;Cdk14-206;Cdk14-210;Cdk14-205;Cdk14-212;Cdk14-209,Cdk14;Cdk14;Cdk14;Cdk14;Cdk14;Cdk14;Cdk14;Cdk14;Cdk14;Cdk14;Cdk14,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,3,16,18647,ENSMUSG00000028926,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
13743,cg22364614,-0.00000377,0.0000116,-0.324028448,0.746135007,loss,ns,-0.000000135,0.0000197,-0.00682525,0.994558671,neg,ns,-0.001133074,0.005784725,-0.195873385,0.844837601,neg,ns,0.073226766,0.000093,0.000198936,0.46725574,0.640645177,pos,ns,0.166565023,Dcc,Dcc_fiveUTR,18,72350416,72350465,72350464,72350465,50,+,GTACCCAAACACATCTAAGACTATTCTCCATATTTCAGCCAACACCTTCG,Promoter (<=1kb),18,71253634,72351069,1097436,2,Dcc-202,604,Dcc-202;Dcc-201;Dcc-203,Dcc;Dcc;Dcc,0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,4,13176,ENSMUSG00000060534,conserved gene and region,18,72350464,72350629,166,*,166,10,0.662650602,0.653286108,0.060240964,0.0000068,CpGisland,TRUE,U13,Hc-P
1251,cg27330209,0.0000774,0.0000099,7.811544164,8.82E-14,gain,yes,0.000000114,0.0000168,0.006762726,0.994608516,pos,ns,0.024237045,0.004929795,4.916440855,0.00000143,pos,ns,5.844248801,-0.000791021,0.000169535,-4.665818725,0.00000458,neg,ns,0.13902357,Bcor,Bcor_Intron,X,12135959,12136008,12136007,12136008,50,-,CAAATATTATCCATTCTCCCCATCGATCGCGGAGTGTACAGATGTGAGCG,"Intron (Bcor-201/Bcor, intron 1 of 13)",20,12036743,12160355,123613,2,Bcor-201,24347,Bcor-201;Bcor-208,Bcor;Bcor,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,56,74,71458,ENSMUSG00000040363,conserved gene and region,X,12135982,12136053,72,*,72,10,0.666666667,1.252173913,0.138888889,2.10E-09,CpGisland,TRUE,NA,NRS
12218,cg12585799,-0.00000318,0.0000027,-1.1766458,0.240239612,loss,ns,-3.09E-08,0.00000459,-0.006715443,0.994646211,neg,ns,0.000095,0.001346096,0.070599312,0.943762179,pos,ns,0.025137431,-0.0000134,0.0000463,-0.288734721,0.772977366,neg,ns,0.932129016,Ptch1,Ptch1_threeUTR,13,63511878,63511927,63511926,63511927,50,+,GCTAGGGCCAGAATGCCCTTCAGTAGAAATTTCAAAAGCGTCTCTGCGCG,3' UTR,13,63508328,63565735,57408,2,Ptch1-201,53808,Ptch1-201;Ptch1-204;Ptch1-206;Ptch1-202;Ptch1-209,Ptch1;Ptch1;Ptch1;Ptch1;Ptch1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,2,36,19206,ENSMUSG00000021466,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
975,cg25869627,0.00000793,0.00000919,0.862696115,0.388971467,gain,ns,0.000000104,0.0000156,0.006653461,0.994695625,pos,ns,-0.005487632,0.004575557,-1.199336395,0.231313057,neg,ns,0.635799853,0.00000767,0.000157353,0.048763621,0.961139075,pos,ns,0.66856699,Fhit,Fhit_Intron,14,10213384,10213433,10213384,10213385,50,+,CGGGTCATAAACCCTTCATGGATCTCTCTCAAGTGGGTGGTGATGTCTCC,"Intron (Fhit-204/Fhit, intron 2 of 6)",14,9550092,10453458,903367,2,Fhit-204,240025,Fhit-204;Fhit-206;Fhit-201;Fhit-208;Fhit-205;Fhit-203;Fhit-207;Fhit-202,Fhit;Fhit;Fhit;Fhit;Fhit;Fhit;Fhit;Fhit,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,6,6,14198,ENSMUSG00000060579,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27423,cg01908850,0.0000263,0.00000468,5.625225791,4.14E-08,gain,yes,5.26E-08,0.00000795,0.006612284,0.994728452,pos,ns,0.006033519,0.002330514,2.58892196,0.010081609,pos,ns,1.996470158,-0.00011454,0.0000801,-1.429141325,0.153970506,neg,ns,0.103959071,Lmx1a,Lmx1a_Exon,1,167692081,167692130,167692081,167692082,50,+,CGTGCAGTGCGCCTCCTGCAAAGAGCCCCTGGAGACCACCTGCTTCTACC,"Exon (Lmx1a-202/Lmx1a, exon 3 of 9)",1,167689237,167848741,159505,1,Lmx1a-202,2844,Lmx1a-202;Lmx1a-201,Lmx1a;Lmx1a,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,6,110648,ENSMUSG00000026686,conserved gene and region,1,167691914,167692082,169,*,169,11,0.609467456,0.720542636,0.065088757,0.000000917,CpGisland,TRUE,U3,Pr-B
3193,cg19083998,0.0000652,0.000017,3.827674981,0.000156493,gain,ns,0.00000019,0.0000289,0.006585712,0.994749636,pos,ns,0.033921348,0.008471675,4.004089851,0.000078,pos,ns,4.108055879,-0.001091043,0.00029134,-3.744909797,0.000215101,neg,ns,0.437055033,Gpat4,Gpat4_threeUTR,8,23171517,23171566,23171565,23171566,50,-,AAATGATCAATACTTTTAATCTAGAGCAAAATTTATTAACTTTCCCATCG,3' UTR,8,23171265,23208346,37082,2,Gpat4-201,36780,Gpat4-201,Gpat4,0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,4,102247,ENSMUSG00000031545,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
24780,cg25296099,0.0000251,0.00000629,3.993711757,0.0000813,gain,ns,-7.04E-08,0.0000107,-0.006583126,0.994751698,neg,ns,0.001689527,0.003132578,0.539340788,0.59003888,pos,ns,0.22911937,-0.0000713,0.000107729,-0.661761391,0.508615747,neg,ns,0.82430855,Gm43656,Gm43656_Intergenic_upstream,3,128450839,128450888,128450887,128450888,50,-,AAGAGCAGGCAAGCAAATGTCAGCCAATATAACATATGAAATACTTAACG,Distal Intergenic,3,128280658,128281091,434,2,Gm43656-201,-169797,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,7,8,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23805,cg12493075,0.00000599,0.00000338,1.771911409,0.07739152,gain,ns,3.77E-08,0.00000575,0.006557379,0.994772224,pos,ns,0.004487668,0.001683111,2.666293355,0.008071578,pos,ns,2.093041545,-0.000085,0.0000579,-1.468379477,0.143015112,neg,ns,0.089195393,Lhx5,Lhx5_Promoter,5,120427795,120427844,120427795,120427796,50,-,CGGCAAAACAGTTTCTCAGTGGTACACCAGTATAATTTTTCACGGCTGGC,Promoter (3-4kb),5,120431699,120441223,9525,1,Lhx5-201,-3904,Lhx5-201,Lhx5,0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,7,14,16873,ENSMUSG00000029595,mapped to different genes,5,120427837,120427983,147,*,147,15,0.544217687,1.381578947,0.102040816,6.81E-12,CpGisland,TRUE,U13,Hc-P
22733,cg17284609.1,-0.000001,0.00000949,-0.105504656,0.91604361,loss,ns,0.000000105,0.0000161,0.006520241,0.994801831,pos,ns,-0.006713053,0.004724717,-1.420837168,0.156369166,neg,ns,0.805848879,-0.0000144,0.000162483,-0.088503982,0.929533267,neg,ns,0.759668017,Sox6,Sox6_Intron,7,115866080,115866129,115866128,115866129,50,+,CTCATAAGCTCAAAAGCTGGTAGTCTAACTGGCTGCCCTAATTAGCTACG,"Intron (Sox6-210/Sox6, intron 2 of 15)",7,115470872,116031047,560176,2,Sox6-210,164918,Sox6-210;Sox6-201;Sox6-202;Sox6-204;Sox6-206;Sox6-209;Sox6-214;Sox6-208,Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6;Sox6,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,37,57,20679,ENSMUSG00000051910,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
11075,cg13192313,0.0000421,0.00000388,10.85638472,1.74E-23,gain,yes,-4.24E-08,0.00000659,-0.006424166,0.994878425,neg,ns,0.008380596,0.001931618,4.338639646,0.0000194,pos,ns,4.711697218,-0.000157724,0.0000664,-2.374358887,0.018188093,neg,ns,0.107355475,Nkx2-1,Nkx2-1_Intron,12,56520527,56520576,56520575,56520576,50,-,ACAAGTCATTTTTAACAGTTACAAGCTTCGCACAAAGACCACACAGGGCG,"Intron (Sfta3-ps-201/Sfta3-ps-201, intron 1 of 6)",12,56531958,56535106,3149,2,Nkx2-1-202,14579,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,29,21869,ENSMUSG00000001496,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
24968,cg11723616,0.0000206,0.00000949,2.169199465,0.030827278,gain,ns,0.000000103,0.0000161,0.006408692,0.994890761,pos,ns,0.009913656,0.004722647,2.099173508,0.036610037,pos,ns,1.436399832,-0.000286354,0.000162411,-1.763140249,0.07886203,neg,ns,0.303545014,Ebf4,Ebf4_Intron,2,130351980,130352029,130352028,130352029,50,+,AAGTGCCCTATCAACATGTTAATCAAATTACTTAGGAGCTAAAATTGACG,"Intron (Ebf4-203/Ebf4, intron 7 of 17)",2,130295169,130370481,75313,1,Ebf4-203,56811,Ebf4-203;Ebf4-201;Ebf4-202;Ebf4-204;Ebf4-205;Ebf4-206,Ebf4;Ebf4;Ebf4;Ebf4;Ebf4;Ebf4,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,3,228598,ENSMUSG00000053552,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
282,cg11388911,-0.00000297,0.00000185,-1.602023194,0.110168926,loss,ns,-1.97E-08,0.00000315,-0.006272964,0.994998966,neg,ns,0.001058862,0.000921914,1.148547053,0.251628264,pos,ns,0.599240578,-0.0000331,0.0000317,-1.045388761,0.29665778,neg,ns,0.058712597,Arid1b,Arid1b_Exon,17,4995670,4995719,4995670,4995671,50,+,CGCTGGGCCTTGCTTTGATCAACATGGCGGACAACAAAGCCCCGGGATGG,"Exon (Arid1b-201/Arid1b, exon 1 of 19)",17,4994332,5097733,103402,1,Arid1b-204,1338,Arid1b-204;Arid1b-201;Arid1b-207;Arid1b-202;Arid1b-203;Arid1b-206,Arid1b;Arid1b;Arid1b;Arid1b;Arid1b;Arid1b,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,11,239985,ENSMUSG00000069729,conserved gene and region,17,4995241,4995884,644,*,644,73,0.723602485,0.866213403,0.113354037,7.08E-60,CpGisland,TRUE,U1,Pr-A
18574,cg10242575,0.00000655,0.00000297,2.206408167,0.028088414,gain,ns,3.16E-08,0.00000505,0.006260151,0.995009181,pos,ns,0.0011549,0.001478039,0.781373129,0.435179394,pos,ns,0.361331677,-0.00000361,0.0000508,-0.07101403,0.94343238,neg,ns,0.015387224,Hoxb6,Hoxb6_fiveUTR,11,96299100,96299149,96299100,96299101,50,+,CGCGGCGCTCGGACTATAAAACACAACAAATCATAAACCCGGCGGAGCAG,5' UTR,11,96292476,96301569,9094,1,Hoxb6-202,6624,Hoxb5-202;Hoxb5-201;Hoxb6-202;Hoxb6-201,Hoxb5;Hoxb5;Hoxb6;Hoxb6,0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,6,16,15414,ENSMUSG00000000690,conserved gene and region,11,96299051,96299649,599,*,599,62,0.65442404,0.973218029,0.103505843,3.02E-48,CpGisland,TRUE,U3,Pr-B
20622,cg24545466,-0.00000248,0.00000151,-1.64180906,0.101643615,loss,ns,1.58E-08,0.00000256,0.006173073,0.995078602,pos,ns,0.000268713,0.00075144,0.357597607,0.720887808,pos,ns,0.142132319,-0.0000285,0.0000258,-1.102598123,0.27105697,neg,ns,0.065510735,Lmo2,Lmo2_fiveUTR,2,103970102,103970151,103970102,103970103,50,-,CGTGATCAGGAAAAAGGAAATGAAACCAGAGACAGAGGGAAGCTGAGCGA,Promoter (<=1kb),2,103970129,103981855,11727,1,Lmo2-203,0,4931422A03Rik-202;Lmo2-207;Lmo2-208;Lmo2-204;Lmo2-203;Lmo2-206;Lmo2-202;Lmo2-201;Lmo2-205,4931422A03Rik;Lmo2;Lmo2;Lmo2;Lmo2;Lmo2;Lmo2;Lmo2;Lmo2,0;0;0;0;0;0;-72;-93;-1028,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,1,16909,ENSMUSG00000032698,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
20837,cg24848704,-0.00000326,0.00000228,-1.425088425,0.155137654,loss,ns,-2.36E-08,0.00000388,-0.006078527,0.995153977,neg,ns,-0.0000304,0.001136881,-0.026779738,0.978652645,neg,ns,0.009371426,-0.00000635,0.0000391,-0.162531328,0.870993352,neg,ns,0.947379011,Trim3,Trim3_Exon,7,105613385,105613434,105613385,105613386,50,+,CGGAACTTGAACTGGCCCTCATTGGAGAAAACCTGGAGCAGAGGAGCAAG,Promoter (<=1kb),7,105612308,105613406,1099,2,Trim3-208,0,Trim3-203;Trim3-201;Trim3-202;Trim3-205;Trim3-209;Trim3-208;Trim3-206;Trim3-207,Trim3;Trim3;Trim3;Trim3;Trim3;Trim3;Trim3;Trim3,0;0;0;0;-1529;0;4592;20091,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,2,55992,ENSMUSG00000036989,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
1833,cg23390953,-0.00000577,0.00000388,-1.488924851,0.137523753,loss,ns,3.99E-08,0.00000658,0.006057221,0.995170962,pos,ns,-0.002629724,0.001928632,-1.363518252,0.173708593,neg,ns,0.760178697,0.0000142,0.0000663,0.213967794,0.830712837,pos,ns,0.920703904,Foxp2,Foxp2_Intergenic_downstream,6,15468250,15468299,15468250,15468251,50,+,CGAGCCCCTCTGTCACAGAGCAGACCTTTTGAAGAGTACCTACTTTTCAT,Distal Intergenic,6,15376689,15439048,62360,1,Foxp2-206,91561,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,4,65,114142,ENSMUSG00000029563,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10673,cg09454919,0.00000773,0.00000694,1.113119114,0.266519651,gain,ns,7.06E-08,0.0000118,0.005981889,0.995231019,pos,ns,-0.01524915,0.003455463,-4.413055286,0.0000141,neg,ns,4.851225198,0.000459399,0.000118833,3.865921378,0.000134845,pos,ns,0.808162829,Tnip1,Tnip1_Exon,11,54940719,54940768,54940767,54940768,50,+,TTTATCCCTTGCATTTTTTCCTTCAGCCGGGAATTCTCCTTCACTAGGCG,"Exon (Tnip1-206/Tnip1, exon 2 of 18)",11,54910785,54956122,45338,2,Tnip1-206,15354,Tnip1-206;Tnip1-207;Tnip1-202;Tnip1-201;Tnip1-205;Tnip1-203;Tnip1-204;Tnip1-208;Tnip1-212;Tnip1-211;Tnip1-210,Tnip1;Tnip1;Tnip1;Tnip1;Tnip1;Tnip1;Tnip1;Tnip1;Tnip1;Tnip1;Tnip1,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,57783,ENSMUSG00000020400,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18518,cg03218689,0.0000181,0.0000108,1.671905891,0.095551881,gain,ns,0.000000107,0.0000184,0.005838978,0.995344952,pos,ns,-0.000957212,0.005378592,-0.177966925,0.858865188,neg,ns,0.066075,0.000316281,0.000184969,1.709909203,0.088283275,pos,ns,0.207356121,Hoxb9,Hoxb9_Promoter,11,96271298,96271347,96271298,96271299,50,-,CGCTTTATCAGGCAGTCGGAAAAACTTTGACCAATCATTTTGCAAGGAGA,Promoter (<=1kb),11,96271457,96276595,5139,1,Hoxb9-201,-159,Hoxb9-201;Hoxb9-202,Hoxb9;Hoxb9,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,7,22,15417,ENSMUSG00000020875,mapped to different genes,11,96271235,96271356,122,*,122,12,0.573770492,1.195102041,0.098360656,2.23E-09,CpGisland,TRUE,U13,Hc-P
17356,cg12853958,-0.000033,0.0000046,-7.169459896,5.55E-12,loss,yes,-4.54E-08,0.00000781,-0.005812096,0.995366382,neg,ns,-0.001405046,0.002288871,-0.613860034,0.539758013,neg,ns,0.267800901,0.0000519,0.0000787,0.659055044,0.510349663,pos,ns,0.91145353,Agap1,Agap1_Intron,1,89848349,89848398,89848397,89848398,50,+,CTTTCCTCATTAACAAGCAATTGAATTAATTAAATGCTACTCAGAACACG,"Intron (Agap1-201/Agap1, intron 16 of 17)",1,89454806,89897617,442812,1,Agap1-201,393543,Agap1-201;Agap1-204;Agap1-202,Agap1;Agap1;Agap1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,25,29,347722,ENSMUSG00000055013,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26946,cg15700006,-0.00000368,0.0000018,-2.044555392,0.041743126,loss,ns,1.75E-08,0.00000306,0.005712951,0.995445424,pos,ns,0.001447183,0.000896419,1.614404219,0.107457127,pos,ns,0.968764774,-0.0000231,0.0000308,-0.748968069,0.454444364,neg,ns,0.033718011,Ski,Ski_Exon,4,155222428,155222477,155222428,155222429,50,-,CGAGCTCATGGAGCTCAGGTGGAACTGCTCCAGCGTCTTCTGCAGCCCCG,Promoter (<=1kb),4,155154075,155222535,68461,2,Ski-202,58,Ski-202;Ski-201,Ski;Ski,0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,4,8,20481,ENSMUSG00000029050,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U2,Pr-W
26195,cg04865264,0.000251877,0.0000123,20.4131162,2.67E-59,gain,yes,0.000000119,0.000021,0.00567207,0.995478015,pos,ns,-0.001036098,0.006141243,-0.168711519,0.866133583,neg,ns,0.062415122,0.000664462,0.000211197,3.146172592,0.001814822,pos,ns,0.319469558,Ovol2,Ovol2_fiveUTR,2,144332135,144332184,144332183,144332184,50,+,AACTTGGGACTGAGCATGCGCCCTGCAACATAACGGTGTCAACAAGCTCG,Promoter (<=1kb),2,144305175,144332146,26972,2,Ovol2-201,0,Ovol2-202;Ovol2-201;Ovol2-203,Ovol2;Ovol2;Ovol2,-440;0;-809,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,4,5,107586,ENSMUSG00000037279,conserved gene but different region,2,144332153,144332212,60,*,60,8,0.65,1.304347826,0.133333333,0.000000221,CpGisland,TRUE,U3,Pr-B
18279,cg11152798,0.0000504,0.0000103,4.897685703,0.00000156,gain,yes,-9.91E-08,0.0000175,-0.005668442,0.995480908,neg,ns,0.002360333,0.005124181,0.460626303,0.645389698,pos,ns,0.190177971,-0.000229641,0.00017622,-1.303147835,0.193491368,neg,ns,0.69489208,Gm48316,Gm48316_Intergenic_upstream,13,94680406,94680455,94680406,94680407,50,-,CGACAGGCAGCCTTGCCAGATTCATTTTCTGATCAAAGCTGTTTGATTTG,Distal Intergenic,13,94752270,94752593,324,1,Gm48316-201,-71864,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,36,42,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
24249,cg21176649,-0.00000939,0.00000304,-3.082934286,0.002233942,loss,ns,2.93E-08,0.00000517,0.005664284,0.995484223,pos,ns,-0.000202052,0.001515453,-0.13332798,0.894020508,neg,ns,0.048652519,0.0000551,0.0000521,1.056433702,0.291592693,pos,ns,0.938031549,Gm12902,Gm12902_Intergenic_downstream,4,124219325,124219374,124219373,124219374,50,-,ACTTGTGTGCAATTCAAATCTATTACACTTCAGGGAATGTGTCTATATCG,Distal Intergenic,4,123926234,123926555,322,1,Gm12902-201,293140,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,34,34,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
2780,cg15515803,0.0000054,0.00000276,1.956202365,0.051339039,gain,ns,-2.61E-08,0.00000469,-0.00556909,0.995560114,neg,ns,-0.001226833,0.001374276,-0.892712514,0.372703596,neg,ns,0.428636417,0.0000157,0.0000473,0.332834028,0.739484542,pos,ns,0.925034889,Wdpcp,Wdpcp_Intron,11,21694190,21694239,21694190,21694191,50,+,CGCATTACTGCCATCCTTTGTTGCCTTGCAGACAGGAATATGAAAGCAAT,"Intron (Wdpcp-201/Wdpcp, intron 8 of 17)",11,21572235,21898989,326755,1,Wdpcp-201,121955,Wdpcp-201;Wdpcp-205;Wdpcp-204;Wdpcp-206,Wdpcp;Wdpcp;Wdpcp;Wdpcp,0;0;0;-890,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,7,7,216560,ENSMUSG00000020319,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9111,cg06552054,-0.0000063,0.00000684,-0.920479312,0.358038071,loss,ns,-6.38E-08,0.0000116,-0.005490537,0.995622739,neg,ns,0.000652185,0.003404982,0.191538321,0.848229254,pos,ns,0.071486753,-0.0000537,0.000117097,-0.458881115,0.64664111,neg,ns,0.862338248,Gm4791,Gm4791_Intergenic_upstream,9,46899868,46899917,46899868,46899869,50,-,CGCATTCTGGGGAAATGTCTTTTTACCAAAGGTGCTATAATAATAATGAA,Distal Intergenic,9,46998741,47003860,5120,1,Gm4791-201,-98873,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,9,18,215467,ENSMUSG00000094893,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
16364,cg17558125,-0.0000661,0.0000115,-5.723071863,2.47E-08,loss,yes,0.000000107,0.0000196,0.005456234,0.995650086,pos,ns,-0.010941792,0.005746057,-1.904226071,0.057806358,neg,ns,1.238024392,0.000592482,0.000197606,2.998295334,0.002934673,pos,ns,0.90363638,Nfix,Nfix_Exon,8,84772275,84772324,84772323,84772324,50,-,ACGTGAGGCAGCAGTGCCTCGATGAACGGGTGGAACTCATCCTGCAGGCG,"Exon (Nfix-204/Nfix, exon 2 of 11)",8,84704712,84773396,68685,2,Nfix-204,1072,Nfix-204;Nfix-201;Nfix-202;Nfix-203;Nfix-205,Nfix;Nfix;Nfix;Nfix;Nfix,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,20,49,18032,ENSMUSG00000001911,conserved gene and region,8,84771960,84772433,474,*,474,36,0.61814346,0.805285512,0.075949367,3.03E-23,CpGisland,TRUE,U13,Hc-P
10509,cg17368890,-0.0000159,0.00000343,-4.649083351,0.00000494,loss,ns,3.17E-08,0.00000582,0.005448661,0.995656124,pos,ns,-0.001382993,0.001706103,-0.810614916,0.418208713,neg,ns,0.378606923,-0.0000461,0.0000587,-0.786558407,0.432141277,neg,ns,0.94293614,Npas3,Npas3_Intron,12,53926724,53926773,53926724,53926725,50,-,CGTTAAAAAATATTTAATTAGGCTGTAGTTTATACCCAGCTCACTGGGGA,"Intron (Npas3-204/Npas3, intron 4 of 10)",12,53248157,54069532,821376,1,Npas3-204,678567,Npas3-204;Npas3-201;Npas3-203,Npas3;Npas3;Npas3,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,83,103,27386,ENSMUSG00000021010,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14713,cg07937628,0.0000814,0.0000157,5.194515942,0.000000373,gain,yes,0.000000143,0.0000266,0.005389664,0.995703158,pos,ns,0.022293316,0.007796985,2.859222623,0.004534717,pos,ns,2.343449789,-0.000559576,0.000268138,-2.086897581,0.037714082,neg,ns,0.442088926,Gm21816,Gm21816_Intron,16,77421688,77421737,77421688,77421689,50,+,CGGAGCAAGGGTTACATCAAGGCTATTCTCTGGACCGTGCAAACAGTCTA,"Intron (Mir99ahg-207/Mir99ahg-207, intron 4 of 7)",16,77400847,77401208,362,1,Gm21816-201,20841,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,8,8,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U9,En-Pp
24733,cg02815776,-0.0000411,0.0000129,-3.188425462,0.001576625,loss,ns,-0.000000117,0.0000219,-0.005340746,0.995742157,neg,ns,0.004942036,0.006413039,0.770623082,0.441517282,pos,ns,0.355052292,0.000270405,0.000220544,1.226080551,0.221098909,pos,ns,0.394362316,Tspan9,Tspan9_Exon,6,128034421,128034470,128034421,128034422,50,-,CGGCTTGGCAAAGTCCGAGTCCTTGCTGTCCAAAGATGGACTCCGATGGA,"Exon (Tspan9-204/Tspan9, exon 1 of 5)",6,127961396,128143563,182168,2,Tspan9-203,109093,Tspan9-203;Tspan9-202;Tspan9-201;Tspan9-204;Tspan9-211;Tspan9-209;Tspan9-208;Tspan9-207;Tspan9-206,Tspan9;Tspan9;Tspan9;Tspan9;Tspan9;Tspan9;Tspan9;Tspan9;Tspan9,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,4,8,109246,ENSMUSG00000030352,conserved gene and region,6,128034330,128034771,442,*,442,46,0.692307692,0.869148891,0.104072398,4.63E-36,CpGisland,TRUE,U3,Pr-B
20817,cg18340357,-0.00000208,0.00000176,-1.182221776,0.238023719,loss,ns,-1.57E-08,0.00000298,-0.005261603,0.995805252,neg,ns,-0.001008632,0.000874359,-1.153567985,0.249565946,neg,ns,0.602814676,0.0000463,0.0000301,1.540388177,0.124485869,pos,ns,0.050093642,Atp2c1,Atp2c1_fiveUTR,9,105494558,105494607,105494558,105494559,50,+,CGCGTCCCACGGCTGCTCCCACCACCCCTAGCAGCAGCATCTGCAAGAGA,5' UTR,9,105403539,105521147,117609,2,Atp2c1-212,26540,Atp2c1-212;Atp2c1-216;Atp2c1-204;Atp2c1-201;Atp2c1-202;Atp2c1-205;Atp2c1-214;Atp2c1-208;Atp2c1-217;Atp2c1-209;Atp2c1-207;Atp2c1-221;Atp2c1-219;Atp2c1-213,Atp2c1;Atp2c1;Atp2c1;Atp2c1;Atp2c1;Atp2c1;Atp2c1;Atp2c1;Atp2c1;Atp2c1;Atp2c1;Atp2c1;Atp2c1;Atp2c1,0;-138;0;0;0;0;-96;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,2,235574,ENSMUSG00000032570,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U1,Pr-A
25958,cg12156367,-0.00000021,0.000000264,-0.795108392,0.42715879,loss,ns,-2.36E-09,0.000000449,-0.005259025,0.995807307,neg,ns,0.000288635,0.000131475,2.195360025,0.028878758,pos,ns,1.539421491,-0.00000902,0.00000452,-1.99410426,0.047016348,neg,ns,0.007403659,Ddi2,Ddi2_fiveUTR,4,141723128,141723177,141723128,141723129,50,+,CGTCGACCTGGAGGGAAAAGGTCACCTCGGAGAGGTCCCTCCGCACACAG,Promoter (<=1kb),4,141677549,141723419,45871,2,Ddi2-201,242,Ddi2-201;Ddi2-202,Ddi2;Ddi2,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,2,2,68817,ENSMUSG00000078515,mapped to different genes,4,141722743,141723690,948,*,948,107,0.707805907,0.90174952,0.112869198,3.03E-87,CpGisland,TRUE,U1,Pr-A
16862,cg07905480,-0.00000285,0.00000195,-1.464334127,0.144116009,loss,ns,-0.000000017,0.00000331,-0.005142162,0.995900474,neg,ns,-0.0000377,0.000968447,-0.038905719,0.9689906,neg,ns,0.013680436,-0.00000589,0.0000333,-0.176959577,0.8596557,neg,ns,0.951600374,Ythdc1,Ythdc1_Exon,5,86828108,86828157,86828108,86828109,50,-,CGGGATGTGGGAAGGTTAGAAACGTTCTTTGGACTGATAATAGGCACATG,"Exon (Ythdc1-202/Ythdc1, exon 10 of 16)",5,86804221,86836654,32434,1,Ythdc1-202,23887,Ythdc1-202;Ythdc1-203;Ythdc1-208;Ythdc1-201;Ythdc1-207;Ythdc1-206;Ythdc1-205;Ythdc1-204,Ythdc1;Ythdc1;Ythdc1;Ythdc1;Ythdc1;Ythdc1;Ythdc1;Ythdc1,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,5,17,231386,ENSMUSG00000035851,conserved gene and region,5,86828042,86828208,167,*,167,10,0.479041916,1.076724694,0.05988024,0.00000716,CpGisland,TRUE,U10,Tr-S
12262,cg24664689,0.000026,0.00000644,4.034950064,0.0000688,gain,ns,-5.59E-08,0.0000109,-0.005103207,0.99593153,neg,ns,0.005290575,0.003207576,1.649399812,0.100078654,pos,ns,0.999658542,-0.0000999,0.000110308,-0.905886818,0.365699304,neg,ns,0.046254858,Xkr6,Xkr6_Exon,14,63606681,63606730,63606681,63606682,50,+,CGATGCACATCTGCCACTGCTGCAACACCTCCTCGTGCTACTGGGGCTGC,Promoter (<=1kb),14,63606503,63820809,214307,1,Xkr6-201,178,Xkr6-201;Xkr6-203;Xkr6-205,Xkr6;Xkr6;Xkr6,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,10,11,219149,ENSMUSG00000035067,conserved gene and region,14,63606019,63607249,1231,*,1231,130,0.728675873,0.7956862,0.105605199,1.15E-101,CpGisland,TRUE,NA,NRS
26008,cg05970544,-3.18E-08,0.00000102,-0.03118191,0.975144532,loss,ns,-8.82E-09,0.00000173,-0.00509552,0.995937658,neg,ns,-0.000385278,0.000507013,-0.759899193,0.447892348,neg,ns,0.348826357,0.00000257,0.0000174,0.147448862,0.882873593,pos,ns,0.970916702,C2cd5,C2cd5_Exon,6,143019321,143019370,143019321,143019322,50,-,CGCCTACTTGTCTTAATTGATCCACGCCTTATGGTCTGAGCTTTCAGTTT,"Exon (C2cd5-207/C2cd5, exon 25 of 28)",6,143010920,143100107,89188,2,C2cd5-201,80737,C2cd5-201;C2cd5-203;C2cd5-217;C2cd5-202;C2cd5-213;C2cd5-204;C2cd5-207;C2cd5-216,C2cd5;C2cd5;C2cd5;C2cd5;C2cd5;C2cd5;C2cd5;C2cd5,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,8,74741,ENSMUSG00000030279,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
14758,cg17744986,-0.0000611,0.0000142,-4.316103158,0.0000214,loss,ns,0.00000012,0.0000241,0.004992657,0.996019664,pos,ns,-0.004529492,0.007048816,-0.642589008,0.520965775,neg,ns,0.283190807,-0.000238709,0.000242408,-0.984737972,0.325520731,neg,ns,0.320774851,Rnf165,Rnf165_Exon,18,77563147,77563196,77563195,77563196,50,-,TCCTTCTTAATCATTTTTGAATTTCTGCCTAGTGTAATGTTCCACACCCG,"Exon (Rnf165-205/Rnf165, exon 1 of 1)",18,77456110,77565136,109027,2,Rnf165-201,1940,Rnf165-201;Rnf165-202;Rnf165-204;Rnf165-205;Rnf165-203,Rnf165;Rnf165;Rnf165;Rnf165;Rnf165,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,21,225743,ENSMUSG00000025427,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
5628,cg17064981,0.00000875,0.00000387,2.26478321,0.024216163,gain,ns,-3.24E-08,0.00000657,-0.004933469,0.996066851,neg,ns,-0.002548301,0.001923977,-1.324496449,0.186313832,neg,ns,0.729754902,0.000134972,0.0000662,2.039911332,0.042206536,pos,ns,0.913890529,Kirrel3,Kirrel3_Intergenic_upstream,9,34411954,34412003,34412002,34412003,50,-,ATGGCGTCACCCCTTCTGTTGAGCACAATTTTAGGGCAAGATTCATACCG,Distal Intergenic,9,34485894,34489158,3265,1,Kirrel3-204,-73940,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,3,21,67703,ENSMUSG00000032036,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6291,cg09399982,0.0000156,0.00000433,3.609425695,0.0003577,gain,ns,3.51E-08,0.00000736,0.004775042,0.996193153,pos,ns,0.000640209,0.002154901,0.297094371,0.766593434,pos,ns,0.115434905,0.0000235,0.0000741,0.317336496,0.751201912,pos,ns,0.035850816,Nrn1,Nrn1_fiveUTR,13,36734300,36734349,36734348,36734349,50,+,AGTCAAACCATTTGCGACCGCAGACCTTTAAATAGTTAGTTTAGAGAACG,Promoter (<=1kb),13,36725625,36734477,8853,2,Nrn1-201,128,Nrn1-204;Nrn1-201;Nrn1-203;Nrn1-202;Nrn1-205,Nrn1;Nrn1;Nrn1;Nrn1;Nrn1,0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,8,9,68404,ENSMUSG00000039114,conserved gene and region,13,36734112,36734395,284,*,284,18,0.538732394,0.874444064,0.063380282,1.46E-10,CpGisland,TRUE,U1,Pr-A
3247,cg02389125,0.00000552,0.00000963,0.573506202,0.566717813,gain,ns,0.000000074,0.0000164,0.004523506,0.996393686,pos,ns,-0.001439394,0.004790939,-0.300440878,0.764042268,neg,ns,0.116882615,-0.000115765,0.00016476,-0.702625432,0.482816477,neg,ns,0.754361527,Gm11888,Gm11888_Intron,4,23341401,23341450,23341449,23341450,50,+,CGCAATAAACAGCTAAATGAGGCGCACAGCAATTTCACTTGTCACCAGCG,"Intron (Gm11884-201/Gm11884-201, intron 1 of 4)",4,23484820,23486020,1201,1,Gm11888-201,-143370,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,9,14,625462,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18195,cg25418200,0.0000208,0.00000621,3.349274749,0.000910263,gain,ns,-4.67E-08,0.0000105,-0.004432375,0.996466339,neg,ns,-0.006063104,0.003089919,-1.962220888,0.050631084,neg,ns,1.295582775,0.000164974,0.000106262,1.552524445,0.121557071,pos,ns,0.812040812,Cacna1g,Cacna1g_Exon,11,94439698,94439747,94439698,94439699,50,+,CGCGTACCTACCCCCTGGGAGTCGACAGGCAGCTGAATACAGCTTAACTG,"Exon (Cacna1g-202/Cacna1g, exon 14 of 36)",11,94408391,94474100,65710,2,Cacna1g-202,34353,Cacna1g-202;Cacna1g-203;Cacna1g-205;Cacna1g-206;Cacna1g-207;Cacna1g-208;Cacna1g-209;Cacna1g-210;Cacna1g-211;Cacna1g-201;Cacna1g-204;Cacna1g-216,Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g;Cacna1g,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,14,18,12291,ENSMUSG00000020866,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
1408,cg27473332,-0.00000158,0.00000427,-0.370938561,0.710936651,loss,ns,-3.21E-08,0.00000725,-0.004427447,0.996470268,neg,ns,0.002613564,0.002124144,1.230408167,0.219477121,pos,ns,0.658610746,-0.000109978,0.000073,-1.505535733,0.133204615,neg,ns,0.915313746,Ttc39c,Ttc39c_Exon,18,12695542,12695591,12695590,12695591,50,+,CACTGATGTATGCAAGCGAAAGTAAGGACATGAAGGCCCCTTTAGCTACG,"Exon (Ttc39c-208/Ttc39c, exon 5 of 8)",18,12599896,12725017,125122,1,Ttc39c-208,95646,Ttc39c-208;Ttc39c-205;Ttc39c-204;Ttc39c-207;Ttc39c-201;Ttc39c-206,Ttc39c;Ttc39c;Ttc39c;Ttc39c;Ttc39c;Ttc39c,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,3,3,72747,ENSMUSG00000024424,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6789,cg10444422,-0.0000081,0.00000255,-3.171215865,0.001669919,loss,ns,1.89E-08,0.00000434,0.00436092,0.996523305,pos,ns,-0.000757821,0.001270946,-0.596265524,0.551432996,neg,ns,0.258507251,-0.0000329,0.0000437,-0.752124866,0.452546655,neg,ns,0.037196309,Azin1,Azin1_fiveUTR,15,38518983,38519032,38519031,38519032,50,-,ACCTTGAGCAGAAATACCCAAGGCGGCCTGGGCCATAGGCTGCGGGAACG,Promoter (<=1kb),15,38487427,38519266,31840,2,Azin1-201,234,Azin1-201;Azin1-203;Azin1-205;Azin1-207;Azin1-204;Azin1-208,Azin1;Azin1;Azin1;Azin1;Azin1;Azin1,0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,6,9,54375,ENSMUSG00000037458,conserved gene and region,15,38519006,38519183,178,*,178,19,0.662921348,1.029528158,0.106741573,2.29E-15,CpGisland,TRUE,U1,Pr-A
12386,cg06916059,-0.0000135,0.00000974,-1.383330961,0.167558806,loss,ns,7.06E-08,0.0000165,0.004267271,0.996597966,pos,ns,-0.018807879,0.004848034,-3.879485835,0.000127873,neg,ns,3.893221946,0.000719799,0.000166723,4.317319407,0.0000213,pos,ns,0.750547201,Klf7,Klf7_Intron,1,64087964,64088013,64087964,64087965,50,-,CGAGCGCTTGTGTCAGGCAGGGCCTGATGCTTCAGAAACCTGTAATTATT,"Intron (Gm13748-201/Gm13748-201, intron 3 of 3)",1,64029447,64121491,92045,2,Klf7-202,33478,Klf7-202;Klf7-201;Klf7-203,Klf7;Klf7;Klf7,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,21,93691,ENSMUSG00000025959,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
2193,cg27605062,0.00000875,0.00000511,1.712880819,0.087734328,gain,ns,-3.64E-08,0.00000867,-0.004202213,0.996649832,neg,ns,-0.005282071,0.002541083,-2.0786687,0.038469984,neg,ns,1.414877997,0.0000782,0.0000874,0.894584333,0.37170336,pos,ns,0.891942827,Gm12020,Gm12020_Intergenic_upstream,11,18357417,18357466,18357417,18357418,50,-,CGGCAGCTTATTGGAAATGGCTTGATTTATAACCTGTTCTCCTGCCTCAG,Distal Intergenic,11,18325630,18327671,2042,2,Gm12020-201,-29795,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,1,1,627716,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
23212,cg13651176,0.0000701,0.00000757,9.260111833,3.50E-18,gain,yes,0.000000053,0.0000129,0.004123681,0.996712441,pos,ns,0.008818708,0.00376849,2.340117417,0.019911829,pos,ns,1.700888841,-0.000088,0.000129598,-0.679136797,0.497557922,neg,ns,0.644981221,Rnf220,Rnf220_Intron,4,117490496,117490545,117490544,117490545,50,-,GACCATTTTCATTCAGGAAAATCAATAGACAACTTACTGTGATGTACGCG,"Intron (Rnf220-201/Rnf220, intron 1 of 14)",4,117271463,117497052,225590,2,Rnf220-201,6507,Rnf220-201;Rnf220-207;Rnf220-204,Rnf220;Rnf220;Rnf220,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,132,152,66743,ENSMUSG00000028677,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
3003,cg10643442,0.0000106,0.0000103,1.033715145,0.30207509,gain,ns,7.18E-08,0.0000174,0.004122269,0.996713566,pos,ns,-0.004608883,0.005105077,-0.902803757,0.367331011,neg,ns,0.434942406,0.000200372,0.000175563,1.141310199,0.254621727,pos,ns,0.614428041,Gm11882,Gm11882_Intergenic_downstream,4,22302037,22302086,22302085,22302086,50,-,GTCAGATGCATTTATTACCCTCCTCATTATAGTAAACAAGGCAGGAATCG,Distal Intergenic,4,22275833,22276338,506,1,Gm11882-201,26253,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,1,4,100504111,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
21531,cg00745868,-0.0000121,0.00000481,-2.517002955,0.012340035,loss,ns,-3.36E-08,0.00000817,-0.004109273,0.996723927,neg,ns,-0.004523566,0.002392201,-1.890964229,0.059561378,neg,ns,1.225035263,0.0000147,0.0000823,0.178309687,0.858596239,pos,ns,0.91977395,Bsn,Bsn_Exon,9,108109955,108110004,108110003,108110004,50,-,CTGAGGGGCTTAGGGTCAGACAGGGACCGCTGCAGGGTCTTCATGGGGCG,"Exon (Bsn-201/Bsn, exon 5 of 12)",9,108096022,108190384,94363,2,Bsn-201,80380,Bsn-201;Bsn-202,Bsn;Bsn,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,7,8,12217,ENSMUSG00000032589,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
9536,cg26467841,-0.00000801,0.00000277,-2.886913629,0.004163762,loss,ns,-1.87E-08,0.00000471,-0.003965707,0.996838383,neg,ns,-0.002090788,0.001380486,-1.514530863,0.130910155,neg,ns,0.883026663,0.00000295,0.0000475,0.062067799,0.950548839,pos,ns,0.929435482,Susd3,Susd3_Exon,13,49238844,49238893,49238892,49238893,50,-,GGAAGGCCATGGACATGAGCAGGATGATGGCACAGCTCACAATGGAGGCG,"Exon (Susd3-202/Susd3, exon 3 of 5)",13,49230690,49248294,17605,2,Susd3-202,9401,Susd3-202;Susd3-201;Susd3-205;Susd3-206;Susd3-203;Susd3-204,Susd3;Susd3;Susd3;Susd3;Susd3;Susd3,0;0;0;0;0;4007,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,66329,ENSMUSG00000021384,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
26685,cg13977190,-0.00000122,0.000000918,-1.327851302,0.185204122,loss,ns,6.16E-09,0.00000156,0.003950195,0.996850749,pos,ns,-0.000399588,0.000456933,-0.874500408,0.382522786,neg,ns,0.41734269,0.000000687,0.0000157,0.043746369,0.965134741,pos,ns,0.982618784,Camta1,Camta1_threeUTR,4,151059746,151059795,151059794,151059795,50,-,GGACCCCCCATTGGGCGCCAACTACTGTGTGGAACTGCCATAAGCGACCG,3' UTR,4,150917322,151861669,944348,2,Camta1-211,801874,Camta1-211;Camta1-202;Camta1-207;Camta1-201;Camta1-204;Camta1-203;Vamp3-201;Vamp3-203;Vamp3-202,Camta1;Camta1;Camta1;Camta1;Camta1;Camta1;Vamp3;Vamp3;Vamp3,0;0;0;0;0;0;-1793;-1800;-1783,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,4,22,100072,ENSMUSG00000014592,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
13243,cg07893058,0.0000139,0.00000873,1.589017963,0.113075661,gain,ns,-5.81E-08,0.0000148,-0.003919939,0.996874871,neg,ns,-0.003439682,0.004342735,-0.7920542,0.428934741,neg,ns,0.367608777,0.000161794,0.000149346,1.083346771,0.279496419,pos,ns,0.812769786,Nlgn2,Nlgn2_Exon,11,69834004,69834053,69834052,69834053,50,+,GTTGAGGTACAGGCAGTCCTCGCTCTGGTTCTGCACGTAGGTGGCGGCCG,Promoter (<=1kb),11,69823122,69834849,11728,2,Nlgn2-201,796,Nlgn2-201;Nlgn2-202;Nlgn2-203;Tmem256-203;Tmem256-201;Tmem256-205;Tmem256-204;Tmem256-202,Nlgn2;Nlgn2;Nlgn2;Tmem256;Tmem256;Tmem256;Tmem256;Tmem256,0;0;0;-4461;-4471;-4502;-4510;-4585,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,10,17,216856,ENSMUSG00000051790,conserved gene and region,11,69833903,69834425,523,*,523,51,0.709369025,0.77609986,0.09751434,2.27E-38,CpGisland,TRUE,NA,NRS
11650,cg19405113,-0.0000448,0.00000781,-5.737360482,2.29E-08,loss,yes,-5.11E-08,0.0000133,-0.003849139,0.996931315,neg,ns,-0.01283766,0.003888306,-3.301607651,0.001073602,neg,ns,2.969156605,0.000154214,0.000133719,1.153270339,0.24968787,pos,ns,0.800951827,Gm18161,Gm18161_Intergenic_downstream,19,59630864,59630913,59630864,59630865,50,-,CGCAGCTGGAATGGGAAGGTAGCTGCTGTTTGTAGTTAAATAACTCCTCA,Distal Intergenic,19,59540451,59540978,528,1,Gm18161-201,90462,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,8,8,100416590,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
6141,cg21121559,0.00000412,0.00000437,0.942942851,0.346444408,gain,ns,2.85E-08,0.00000743,0.003835245,0.996942392,pos,ns,-0.003331704,0.002175472,-1.531485757,0.126669204,neg,ns,0.897328959,0.0000858,0.0000748,1.146282314,0.252562391,pos,ns,0.937921301,Tenm2,Tenm2_Exon,11,36139707,36139756,36139707,36139708,50,-,CGGCAGGCTCCCCCGATGCAGACGCCGTGAGTGCCACAGTCTACTGAGCA,"Exon (Tenm2-202/Tenm2, exon 14 of 31)",11,36006656,37235882,1229227,2,Tenm2-202,1096126,Tenm2-202;Tenm2-208;Tenm2-201;Tenm2-204;Tenm2-205,Tenm2;Tenm2;Tenm2;Tenm2;Tenm2,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,21,84,23964,ENSMUSG00000049336,conserved gene and region,11,36139608,36139733,126,*,126,10,0.642857143,0.782608696,0.079365079,0.000000572,CpGisland,TRUE,U15,NS
21009,cg17542246,-0.00000395,0.00000144,-2.737212654,0.006553943,loss,ns,-9.06E-09,0.00000245,-0.003693395,0.99705548,neg,ns,0.000343409,0.000718556,0.477915074,0.633047473,pos,ns,0.19856372,0.0000134,0.0000247,0.54297734,0.587535583,pos,ns,0.964043841,Dcaf7,Dcaf7_Exon,11,106051904,106051953,106051904,106051905,50,+,CGCCTCTGCTGGAACAAGCAGGACCCTAACTACCTGGCCACCATGGCCAT,"Exon (Dcaf7-201/Dcaf7, exon 5 of 7)",11,106036872,106059324,22453,1,Dcaf7-201,15032,Dcaf7-201;Dcaf7-202,Dcaf7;Dcaf7,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,3,3,71833,ENSMUSG00000049354,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
13491,cg14648518,-0.0000585,0.0000125,-4.674805661,0.0000044,loss,ns,-0.000000075,0.0000212,-0.003530446,0.997185388,neg,ns,-0.01702775,0.006224651,-2.735534894,0.006586641,neg,ns,2.181335976,0.000400285,0.000214065,1.869919475,0.062437393,pos,ns,0.828898361,Gm34783,Gm34783_Intergenic_downstream,7,70813445,70813494,70813493,70813494,50,+,ATCAGGCAGTAATTCCACTAATTTTACTGCCCTTCTCCCAGCCCTCAACG,Distal Intergenic,7,70912518,70912820,303,2,Gm34783-201,99326,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,3,5,102638149,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
7788,cg19747727,-0.00000278,0.00000116,-2.394564213,0.017233752,loss,ns,-6.91E-09,0.00000197,-0.003498396,0.99721094,neg,ns,0.000483092,0.000578322,0.835332877,0.404173639,pos,ns,0.393432015,-0.0000154,0.0000199,-0.773255356,0.439960484,neg,ns,0.032934294,Shank1,Shank1_Promoter,7,44311048,44311097,44311048,44311049,50,+,CGATTCCTCAGCCCGTCTCGGTACCAGCTGCGTGCCAGCTATTCTTAGCC,Promoter (<=1kb),7,44310253,44360572,50320,1,Shank1-203,795,Clec11a-201;Shank1-203;Shank1-202;Shank1-201,Clec11a;Shank1;Shank1;Shank1,-4146;0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Promoter,1,2,243961,ENSMUSG00000038738,conserved gene and region,7,44311045,44311207,163,*,163,16,0.699386503,0.802708526,0.098159509,2.18E-12,CpGisland,TRUE,U3,Pr-B
23949,cg25105555,-0.00000103,0.00000141,-0.727397671,0.467531365,loss,ns,7.85E-09,0.0000024,0.003272538,0.997391002,pos,ns,-0.000434089,0.000702652,-0.617786396,0.537169715,neg,ns,0.26988848,0.0000216,0.0000242,0.894363409,0.371821327,pos,ns,0.961370324,Foxk2,Foxk2_Exon,11,121296011,121296060,121296059,121296060,50,+,TTTTTTTATGTTTCATAGAATTCAATTCGCCACAATCTCTCTCTGAATCG,"Exon (Foxk2-201/Foxk2, exon 5 of 9)",11,121259990,121309896,49907,1,Foxk2-201,36021,Foxk2-201;Foxk2-203;Foxk2-202,Foxk2;Foxk2;Foxk2,0;0;-2456,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,1,68837,ENSMUSG00000039275,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6584,cg23567910,0.0000171,0.00000571,2.992209681,0.002992114,gain,ns,3.15E-08,0.00000971,0.003249108,0.997409681,pos,ns,0.00361448,0.002843776,1.271014046,0.204676558,pos,ns,0.688931895,-0.0000687,0.0000978,-0.702884922,0.482654964,neg,ns,0.096030481,Zfp536,Zfp536_Promoter,7,37773800,37773849,37773800,37773801,50,+,CGTAGTAGGCAAGGAAATTAGCATACGGTAATTAAACTTCGAGAAAAACG,Promoter (<=1kb),7,37569629,37773641,204013,2,Zfp536-208,-159,Zfp536-202;Zfp536-201;Zfp536-203;Zfp536-206;Zfp536-209;Zfp536-208;Zfp536-205;Zfp536-207;Zfp536-210,Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536;Zfp536,0;0;0;0;0;0;0;0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,4,112,243937,ENSMUSG00000043456,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
24978,cg07241696,0.00000249,0.0000139,0.178882073,0.858147152,gain,ns,-7.68E-08,0.0000237,-0.003241924,0.997415409,neg,ns,-0.01032303,0.006938895,-1.487705211,0.137845109,neg,ns,0.860608638,0.000467187,0.000238628,1.957803738,0.051149862,pos,ns,0.824378996,Pum1,Pum1_threeUTR,4,130780937,130780986,130780937,130780938,50,+,CGTAGCATATAGTGTTGTATATTGTAAATTGTAATTTCAACCAGAAGTAA,3' UTR,4,130663321,130781564,118244,1,Pum1-201,117616,Pum1-201;Pum1-204;Pum1-205;Pum1-203;Pum1-202,Pum1;Pum1;Pum1;Pum1;Pum1,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,3,8,80912,ENSMUSG00000028580,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
20201,cg07299823,0.0000279,0.00000458,6.105940166,3.05E-09,gain,yes,-2.52E-08,0.00000777,-0.003241155,0.997416022,neg,ns,0.006672625,0.002277353,2.929991155,0.00364139,pos,ns,2.438732797,-0.0001433,0.0000783,-1.829717641,0.068252428,neg,ns,0.092570273,Unc79,Unc79_fiveUTR,12,102949300,102949349,102949300,102949301,50,+,CGGACAGGAAGCCTTTGGCCGCCTATTAAATCCCACCCATTTCTCCGGGG,Promoter (<=1kb),12,102948859,103184001,235143,1,Unc79-202,441,Unc79-202;Unc79-208,Unc79;Unc79,0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,12,24,217843,ENSMUSG00000021198,conserved gene and region,12,102948810,102949512,703,*,703,59,0.644381223,0.809149434,0.083926031,2.91E-40,CpGisland,TRUE,NA,NRS
8761,cg24970822,-0.00000475,0.0000042,-1.132432815,0.258327659,loss,ns,-2.25E-08,0.00000713,-0.003158139,0.997482205,neg,ns,0.000510984,0.002089843,0.244508344,0.806998898,pos,ns,0.093127058,-0.00000199,0.0000719,-0.027701239,0.97791826,neg,ns,0.919772477,Dscaml1,Dscaml1_Intron,9,45720233,45720282,45720233,45720234,50,+,CGAATGGGCGATCTGTATTAGTTTATTACACTGGGTCCCTAATTACATGG,"Intron (Dscaml1-211/Dscaml1, intron 17 of 32)",9,45430291,45753262,322972,1,Dscaml1-211,289942,Dscaml1-211;Dscaml1-201;Dscaml1-210;Dscaml1-207,Dscaml1;Dscaml1;Dscaml1;Dscaml1,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,15,32,114873,ENSMUSG00000032087,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
27869,cg12864786,-0.00000316,0.00000138,-2.292378819,0.022553505,loss,ns,-0.000000007,0.00000234,-0.002987662,0.997618116,neg,ns,-0.001197345,0.000686539,-1.744030198,0.082145031,neg,ns,1.085418704,0.0000622,0.0000236,2.634098518,0.008859529,pos,ns,0.961813261,Ush2a,Ush2a_Intron,1,188884546,188884595,188884546,188884547,50,+,CGCATAGCTCATTATGAAACAGTTATCAAGGATACATGAAAAATTAATTG,"Intron (Ush2a-201/Ush2a, intron 60 of 70)",1,188263034,188965041,702008,1,Ush2a-201,621512,Ush2a-201,Ush2a,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,33,36,22283,ENSMUSG00000026609,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12109,cg10966352,-0.000000951,0.00000066,-1.440506731,0.150733284,loss,ns,3.27E-09,0.00000112,0.002911672,0.997678698,pos,ns,-0.000112652,0.000328622,-0.342801858,0.731979857,neg,ns,0.13550087,-0.0000114,0.0000113,-1.00453313,0.315905157,neg,ns,0.018182652,Pias1,Pias1_Exon,9,62980814,62980863,62980814,62980815,50,-,CGAATATTAGAAGTGAATTCGAGCTGCGCTTTACCTTTAGTTCCGCACTG,Promoter (<=1kb),9,62878368,62980879,102512,2,Pias1-201,16,Pias1-201;Pias1-202;Pias1-205,Pias1;Pias1;Pias1,0;0;0,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,8,12,56469,ENSMUSG00000032405,conserved gene but different region,9,62980517,62981139,623,*,623,66,0.706260032,0.90840403,0.105939005,4.79E-52,CpGisland,TRUE,NA,NRS
7895,cg23783686,9.97E-08,0.00000678,0.014712742,0.988270818,gain,ns,3.32E-08,0.0000115,0.002885811,0.997699316,pos,ns,0.002572212,0.003372391,0.762726529,0.446206489,pos,ns,0.350464118,0.0000125,0.000115976,0.107379512,0.914557368,pos,ns,0.85078991,Pax5,Pax5_Intron,4,44623214,44623263,44623262,44623263,50,-,CTGTAATGGCCCGACTGCAGCCCATATCAATAACAGATGAGGTTTAATCG,"Intron (Pax5-201/Pax5, intron 6 of 9)",4,44524757,44710487,185731,2,Pax5-201,87224,Pax5-201;Pax5-202;Pax5-203;Pax5-204;Pax5-205;Pax5-207;Pax5-206;Pax5-209;Pax5-210;Pax5-212;Pax5-213;Pax5-214;Pax5-215;Pax5-220;Pax5-211,Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5;Pax5,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,19,45,18507,ENSMUSG00000014030,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
20978,cg12854350,0.0000318,0.00000711,4.478077617,0.0000106,gain,ns,-2.91E-08,0.0000121,-0.002411567,0.998077401,neg,ns,0.0027577,0.003539521,0.779116771,0.43650528,pos,ns,0.360010499,-0.0000742,0.000121724,-0.609842936,0.542412603,neg,ns,0.020412456,Spry2,Spry2_Promoter,14,105897328,105897377,105897376,105897377,50,-,ATGTGGATCCGAGGCGGAACAGAGCAGTTGTTGTCCCAGAGGATATATCG,Promoter (<=1kb),14,105891947,105896819,4873,2,Spry2-201,-558,Spry2-201,Spry2,0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,8,12,24064,ENSMUSG00000022114,conserved gene and region,14,105896882,105897547,666,*,666,86,0.741741742,0.95483871,0.129129129,5.47E-76,CpGisland,TRUE,U1,Pr-A
26914,cg01284284,-0.0000807,0.0000109,-7.407615038,1.23E-12,loss,yes,4.15E-08,0.0000185,0.002241087,0.998213315,pos,ns,-0.011563021,0.005424476,-2.131638392,0.033822748,neg,ns,1.470791114,0.000160488,0.000186547,0.860306045,0.39028521,pos,ns,0.810285113,Prdm16,Prdm16_Intron,4,154630625,154630674,154630673,154630674,50,-,TTGTAGTTAATGAAATTAAACACACCAATCGCATTTGTCCCCAGGGGACG,"Intron (Prdm16-201/Prdm16, intron 1 of 16)",4,154316125,154636866,320742,2,Prdm16-201,6192,Prdm16-201;Prdm16-202;Prdm16-203;Prdm16-204;Prdm16-205;Prdm16-206;Prdm16-210;Prdm16-207;Prdm16-212,Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16;Prdm16,0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,26,32,70673,ENSMUSG00000039410,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
8801,cg18219506,-0.000008,0.00000178,-4.499033648,0.00000967,loss,ns,6.40E-09,0.00000302,0.002117895,0.998311527,pos,ns,-0.000716405,0.000885378,-0.809152213,0.419048188,neg,ns,0.377736033,0.0000152,0.0000304,0.499462479,0.617807902,pos,ns,0.941461336,Oga,Oga_fiveUTR,19,45762255,45762304,45762303,45762304,50,-,GAATGACTACGACACCCTGTTGAGATCAGATCCAAGCGGAGAACGTTACG,5' UTR,19,45750259,45783551,33293,2,Oga-201,21247,Oga-201;Oga-204;Oga-203;Oga-206,Oga;Oga;Oga;Oga,0;0;0;0,TRUE,FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,21,76055,ENSMUSG00000025220,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
16441,cg23053149,-0.0000061,0.00000329,-1.852134307,0.064957082,loss,ns,1.16E-08,0.00000559,0.002081325,0.998340683,pos,ns,0.002333811,0.001639021,1.423905255,0.155479651,pos,ns,0.808326442,-0.000124392,0.0000564,-2.206873427,0.028055546,neg,ns,0.953044465,Ric8b,Ric8b_Intron,10,85004782,85004831,85004830,85004831,50,+,AGCAGATGTGAAGGACCTGCACCAGGATGGTGGTTAGCAACAGTGGCCCG,"Intron (Ric8b-201/Ric8b, intron 9 of 9)",10,84917616,85016447,98832,1,Ric8b-201,87166,Ric8b-201;Ric8b-202;Ric8b-205;Ric8b-204,Ric8b;Ric8b;Ric8b;Ric8b,0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,14,237422,ENSMUSG00000035620,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
18993,cg07562874,-0.0000219,0.0000139,-1.576540459,0.115921204,loss,ns,-4.77E-08,0.0000236,-0.002020453,0.998389212,neg,ns,0.00550439,0.006918487,0.79560598,0.42686986,pos,ns,0.369704508,-0.000574552,0.000237926,-2.414831486,0.016321101,neg,ns,0.55987474,Dach1,Dach1_Intron,14,98139410,98139459,98139410,98139411,50,+,CGACCCTGGGGTGATTTATAATCTTGTGAAACCCTGTCCACACTGCTGAC,"Intron (Dach1-201/Dach1, intron 1 of 10)",14,97786853,98169543,382691,2,Dach1-201,30084,Dach1-201;Dach1-202;Dach1-203,Dach1;Dach1;Dach1,0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,61,76,13134,ENSMUSG00000055639,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
2413,cg26045960,-0.00000194,0.00000103,-1.877472277,0.061392209,loss,ns,3.49E-09,0.00000175,0.001986753,0.99841608,pos,ns,-0.0000338,0.000514086,-0.065835228,0.947551445,neg,ns,0.023397202,-0.00000906,0.0000177,-0.512337934,0.608779345,neg,ns,0.031157499,Pde7a,Pde7a_Exon,3,19310909,19310958,19310957,19310958,50,+,GGAGCTGAAGCTGATGGCTCCTCGGCGGCTGAGGACGTGCTGGGGGACCG,Promoter (<=1kb),3,19223108,19311322,88215,2,Pde7a-202,364,Pde7a-202;Pde7a-210;Pde7a-204;Pde7a-207,Pde7a;Pde7a;Pde7a;Pde7a,0;0;0;-6,TRUE,FALSE,TRUE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,1,18583,ENSMUSG00000069094,conserved gene and region,3,19310694,19311848,1155,*,1155,176,0.76017316,1.055336646,0.152380952,4.34E-170,CpGisland,TRUE,U1,Pr-A
20229,cg03107322,0.00000952,0.00000226,4.212223596,0.0000332,gain,ns,-7.45E-09,0.00000384,-0.001939802,0.99845351,neg,ns,0.002240595,0.001125237,1.991219595,0.04733416,pos,ns,1.324825329,-0.0000377,0.0000387,-0.973757807,0.330936013,neg,ns,0.062416587,Hoxc11,Hoxc11_Exon,15,102956585,102956634,102956585,102956586,50,-,CGGATGCTGAACCTGACGGACCGACAAGTGAAAATTTGGTTTCAGAACAG,"Exon (Hoxc11-201/Hoxc11, exon 2 of 2)",15,102954427,102957708,3282,1,Hoxc11-201,2158,Hoxc11-201,Hoxc11,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,8,24,109663,ENSMUSG00000001656,conserved gene and region,15,102956280,102956607,328,*,328,23,0.625,0.718476191,0.070121951,2.74E-14,CpGisland,TRUE,U13,Hc-P
26857,cg07411071,0.00000127,0.00000391,0.324170496,0.746027572,gain,ns,1.29E-08,0.00000664,0.001935995,0.998456545,pos,ns,-0.00056935,0.001945783,-0.292607059,0.770018267,neg,ns,0.113498972,0.0000425,0.0000669,0.635024604,0.525880784,pos,ns,0.913402461,Nol4l,Nol4l_Intron,2,153484238,153484287,153484238,153484239,50,+,CGGCCCCATCAGGAGCTCGCCAATTAGCAGTAACCTTTCACTGTGGGCCT,"Intron (Nol4l-201/Nol4l, intron 1 of 10)",2,153407462,153529971,122510,2,Nol4l-201,45684,Nol4l-201;Nol4l-205;Nol4l-203;Nol4l-206,Nol4l;Nol4l;Nol4l;Nol4l,0;0;0;-4512,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,2,14,329540,ENSMUSG00000061411,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U8,En-Pd
12319,cg25630529,-0.00000368,0.00000223,-1.652073705,0.099532006,loss,ns,-7.17E-09,0.00000378,-0.001894889,0.998489317,neg,ns,0.000461719,0.001107925,0.416742354,0.677155286,pos,ns,0.169311727,-0.000036,0.0000381,-0.945325574,0.345228908,neg,ns,0.932273191,Wdr7,Wdr7_Exon,18,63935901,63935950,63935901,63935902,50,+,CGCCATGGTTCAGTGGCCCTGTACGACATCCGGACTGGAAAATGTCAGGT,"Exon (Wdr7-201/Wdr7, exon 26 of 28)",18,63708685,63989776,281092,1,Wdr7-201,227216,Wdr7-201;Wdr7-204,Wdr7;Wdr7,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,1,11,104082,ENSMUSG00000040560,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
19851,cg20728066,-0.00000309,0.00000126,-2.444738189,0.015052315,loss,ns,-3.88E-09,0.00000214,-0.001811754,0.998555595,neg,ns,-0.0000784,0.000628105,-0.124808539,0.900756021,neg,ns,0.045392826,-0.0000119,0.0000216,-0.550050974,0.582680499,neg,ns,0.040919804,Psme3,Psme3_fiveUTR,11,101316445,101316494,101316493,101316494,50,-,CCATGGCCTCGTTGCTGAAGGTGGATCAGGAAGTGAAGCTCAAGGTAGCG,Promoter (<=1kb),11,101316213,101320008,3796,1,Psme3-204,232,Psme3-204;Psme3-201;Psme3-205;Psme3-202;Psme3-203,Psme3;Psme3;Psme3;Psme3;Psme3,0;0;-483;-529;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,2,3,19192,ENSMUSG00000078652,conserved gene and region,11,101316107,101316653,547,*,547,45,0.685557587,0.700204813,0.08226691,1.82E-30,CpGisland,TRUE,U1,Pr-A
21998,cg14548334,-0.00000442,0.0000015,-2.941837431,0.003508631,loss,ns,-4.56E-09,0.00000255,-0.001786366,0.998575836,neg,ns,-0.000448004,0.000747779,-0.599112078,0.549535715,neg,ns,0.260004077,0.00000809,0.0000257,0.314621089,0.753261013,pos,ns,0.038099918,Zfp143,Zfp143_fiveUTR,7,110061771,110061820,110061771,110061772,50,+,CGGAGGTTCGTATATAAATGTGTTTTTACCCAGTGTGCATTATTCTCCGC,Promoter (<=1kb),7,110061217,110094808,33592,1,Zfp143-204,554,Zfp143-204;Zfp143-205;Zfp143-201;Zfp143-202,Zfp143;Zfp143;Zfp143;Zfp143,0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,4,7,20841,ENSMUSG00000061079,conserved gene and region,7,110061325,110061866,542,*,542,40,0.590405904,0.850196078,0.073800738,2.91E-25,CpGisland,TRUE,U1,Pr-A
13814,cg22940406,-0.0000119,0.00000341,-3.502269964,0.000529124,loss,ns,-9.89E-09,0.00000579,-0.001707794,0.998638477,neg,ns,-0.003639682,0.0016958,-2.146292137,0.032625609,neg,ns,1.486441376,0.0000027,0.0000583,0.046327922,0.963078715,pos,ns,0.914498485,Robo1,Robo1_Exon,16,73004508,73004557,73004556,73004557,50,+,AAAATCAATGAGATGAAAACCTTCAATAGCCCAAATCTGAAGGATGGGCG,"Exon (Robo1-206/Robo1, exon 21 of 29)",16,72563700,73046095,482396,1,Robo1-206,440808,Robo1-206;Robo1-201;Robo1-207;Robo1-208,Robo1;Robo1;Robo1;Robo1,0;0;0;-1864,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,8,19876,ENSMUSG00000022883,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U11,Tr-P
2758,cg25878799,0.0000023,0.0000019,1.210744217,0.226915709,gain,ns,5.46E-09,0.00000323,0.001693375,0.998649972,pos,ns,0.001054758,0.000945445,1.115620567,0.265448638,pos,ns,0.576019499,-0.00000224,0.0000325,-0.068899889,0.945113728,neg,ns,0.051689472,Prdm13,Prdm13_fiveUTR,4,21685899,21685948,21685947,21685948,50,+,CCACCCGAGAGGGTCACATGGAGTGGTTCCCTCAGCCCCCTGCATAATCG,Promoter (<=1kb),4,21677480,21685963,8484,2,Prdm13-205,15,Prdm13-205;Prdm13-201;Prdm13-202;Prdm13-203;Prdm13-206;Prdm13-204,Prdm13;Prdm13;Prdm13;Prdm13;Prdm13;Prdm13,0;0;0;0;0;-54,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,23,230025,ENSMUSG00000040478,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U13,Hc-P
9758,cg25661986,-0.0000851,0.00000914,-9.312082083,2.39E-18,loss,yes,-2.59E-08,0.0000155,-0.001668585,0.998669736,neg,ns,-0.001973055,0.004550554,-0.433585589,0.664890966,neg,ns,0.177249568,-0.000502592,0.000156493,-3.211592699,0.00145864,neg,ns,0.827948344,Trps1,Trps1_Intron,15,50666132,50666181,50666180,50666181,50,+,CCTATAGGGTAATTTTTCCATCCAGATGCAAGTGCTATCAGAGGCTCTCG,"Intron (Trps1-202/Trps1, intron 4 of 5)",15,50654752,50889691,234940,2,Trps1-202,223510,Trps1-202;Trps1-206;Trps1-204;Trps1-205;Trps1-207;Trps1-201,Trps1;Trps1;Trps1;Trps1;Trps1;Trps1,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,36,83925,ENSMUSG00000038679,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21275,cg10450703,-0.00000222,0.0000024,-0.926172126,0.355076993,loss,ns,6.67E-09,0.00000408,0.001633928,0.998697366,pos,ns,0.001375267,0.001195106,1.150749226,0.250722269,pos,ns,0.600807091,-0.0000219,0.0000411,-0.531965621,0.595130829,neg,ns,0.947088788,Ssbp3,Ssbp3_Exon,4,107039977,107040026,107040025,107040026,50,+,AGTGACAACATCTACACAATGATTAATCCAGTGCCGCCTGGAGGCAGCCG,"Exon (Ssbp3-201/Ssbp3, exon 14 of 18)",4,106911470,107049694,138225,1,Ssbp3-201,128507,Ssbp3-201;Ssbp3-215;Ssbp3-202;Ssbp3-203;Ssbp3-213;Ssbp3-211;Ssbp3-212;Ssbp3-204;Ssbp3-210;Ssbp3-208;Ssbp3-217,Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3;Ssbp3,0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,6,18,72475,ENSMUSG00000061887,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
23962,cg21953480,-0.0000046,0.0000035,-1.312709104,0.190251973,loss,ns,9.09E-09,0.00000595,0.001525806,0.998783565,pos,ns,0.001079831,0.001744473,0.619001377,0.536370059,pos,ns,0.270535473,-0.0000238,0.00006,-0.396648321,0.691899723,neg,ns,0.926748993,Erp29,Erp29_threeUTR,5,121429307,121429356,121429355,121429356,50,+,TGTCCGTCCGTCTTTAATTTCTCCAGATACTGCAGGCAAACAGCTCGCCG,3' UTR,5,121428590,121452487,23898,2,Erp29-204,23131,Erp29-204;Naa25-201;Naa25-205;Naa25-202;Naa25-203,Erp29;Naa25;Naa25;Naa25;Naa25,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,TRUE,FALSE,FALSE,threeUTR,11,11,67397,ENSMUSG00000029616,mapped to different genes,5,121429273,121429444,172,*,172,10,0.523255814,0.856147337,0.058139535,0.00000923,CpGisland,TRUE,U10,Tr-S
4422,cg20857215,0.000000211,0.000001,0.209871076,0.83390616,gain,ns,2.47E-09,0.00000171,0.001449785,0.998844172,pos,ns,0.0000244,0.000499957,0.048794312,0.961114636,pos,ns,0.017224809,0.00000701,0.0000172,0.407682954,0.683787853,pos,ns,0.972725246,Ddx31,Ddx31_Exon,2,28875787,28875836,28875787,28875788,50,-,CGGAGGCAGAATATGTCAACTCGTTGGCTTCTCACAAAATCAAGTGAGTC,"Exon (Ddx31-201/Ddx31, exon 16 of 20)",2,28840459,28905571,65113,1,Ddx31-201,35328,Ddx31-201,Ddx31,0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,5,227674,ENSMUSG00000026806,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
10611,cg27400042,0.00000268,0.00000221,1.210392651,0.227050326,gain,ns,5.01E-09,0.00000376,0.001331869,0.998938179,pos,ns,0.000286049,0.001101601,0.259666749,0.795293208,pos,ns,0.099472727,-0.00000486,0.0000379,-0.128319623,0.897979242,neg,ns,0.064178141,Acin1,Acin1_fiveUTR,14,54653646,54653695,54653646,54653647,50,+,CGGAGACATGCAGGGGAGCCATCTTGCCACTTACCCAGCAGCCTGTGTGT,Promoter (<=1kb),14,54642161,54653667,11507,2,Acin1-216,0,Acin1-208;Acin1-216;Acin1-202;Acin1-201;Acin1-219;Acin1-218;Acin1-221;Acin1-224;Acin1-203;Acin1-225;Acin1-204;Acin1-226;Acin1-213;Acin1-214;Acin1-209;Acin1-220,Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1;Acin1,0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,7,22,56215,ENSMUSG00000022185,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21674,cg03919675,-0.00000326,0.00000175,-1.865889832,0.063001053,loss,ns,3.52E-09,0.00000297,0.001185674,0.999054732,pos,ns,0.001692837,0.000870825,1.943945781,0.052806538,pos,ns,1.277312302,-0.0000998,0.0000299,-3.332162526,0.000966036,neg,ns,0.95252868,Yy1,Yy1_Exon,12,108815497,108815546,108815497,108815498,50,+,CGCTTTTCACTGGACTTCAATTTGCGCACACATGTGCGAATCCATACCGG,"Exon (Yy1-201/Yy1, exon 5 of 5)",12,108792973,108820148,27176,1,Yy1-201,22524,Yy1-201;Yy1-202,Yy1;Yy1,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,2,3,22632,ENSMUSG00000021264,mapped to different genes,12,108815481,108815575,95,*,95,8,0.568421053,1.043956044,0.084210526,0.00000796,CpGisland,TRUE,U10,Tr-S
13094,cg22253255,-0.000000529,0.000000352,-1.502436234,0.134002435,loss,ns,7.02E-10,0.000000599,0.001173303,0.999064594,pos,ns,0.00028868,0.000175394,1.645892204,0.100799391,pos,ns,0.996542093,-0.0000155,0.00000603,-2.572042486,0.010575594,neg,ns,0.007628998,Kdm6b,Kdm6b_Intron,11,69409505,69409554,69409553,69409554,50,-,GGGGGATTTCGGGGGTTGCCCGTGACGTGGCTACTTGCGCAGCGGAAGCG,"Intron (Kdm6b-201/Kdm6b, intron 1 of 22)",11,69398508,69413675,15168,2,Kdm6b-201,4121,Kdm6b-201,Kdm6b,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,1,8,216850,ENSMUSG00000018476,conserved gene and region,11,69409391,69409599,209,*,209,18,0.722488038,0.668443497,0.086124402,7.38E-13,CpGisland,TRUE,U1,Pr-A
1269,cg18372786,0.000052,0.00000695,7.480635004,7.68E-13,gain,yes,-1.33E-08,0.0000118,-0.001126821,0.999101651,neg,ns,0.001228161,0.003457611,0.355205202,0.722677419,pos,ns,0.141055515,0.0000711,0.000118907,0.597564351,0.550566902,pos,ns,0.655460086,Bcor,Bcor_Intron,X,12152615,12152664,12152615,12152616,50,-,CGCCTTTCATTACGGGGCCTACGAAAGCAGCAGCCCAGGCAAATATGTAG,"Intron (Bcor-201/Bcor, intron 1 of 13)",20,12036743,12160355,123613,2,Bcor-201,7691,Bcor-201;Bcor-208,Bcor;Bcor,0;0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,56,74,71458,ENSMUSG00000040363,conserved gene and region,X,12152395,12152637,243,*,243,14,0.658436214,0.534569453,0.057613169,8.16E-08,CpGisland,TRUE,NA,NRS
18132,cg20508712,3.37E-08,0.00000613,0.005496804,0.995617743,gain,ns,1.17E-08,0.0000104,0.001119169,0.999107752,pos,ns,0.003836505,0.003051415,1.257287338,0.209595992,pos,ns,0.678617026,-0.000185911,0.000104938,-1.771627416,0.077438778,neg,ns,0.883970366,Gm12647,Gm12647_Intron,4,94145395,94145444,94145395,94145396,50,-,CGAATGGATCCATTTAATAGGCAGAACAAGTTGGATATAAACTCTTTAAT,"Intron (Gm12648-201/Gm12648-201, intron 4 of 5)",4,94061373,94061637,265,1,Gm12647-201,84071,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,3,3,100417559,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
9014,cg17242823,0.000000371,0.0000051,0.072714802,0.942079962,gain,ns,9.59E-09,0.00000867,0.001106006,0.999118246,pos,ns,-0.001092121,0.002540138,-0.429945633,0.6675339,neg,ns,0.175526674,0.00000184,0.0000874,0.021091371,0.983186337,pos,ns,0.709049588,Srf,Srf_threeUTR,17,46549017,46549066,46549017,46549018,50,-,CGTGAAAAGGCAACAATAAATAAGTGGTGCCATCCCTTGGGCCATCTGTC,3' UTR,17,46548329,46556175,7847,2,Srf-201,7109,Cul9-201;Cul9-204;Cul9-202;Srf-201;Srf-203;Srf-202;Srf-204,Cul9;Cul9;Cul9;Srf;Srf;Srf;Srf,-2629;-2629;-2716;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,11,20807,ENSMUSG00000015605,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
4178,cg03536971,-0.0000279,0.00000642,-4.344863392,0.0000189,loss,ns,1.18E-08,0.0000109,0.001080671,0.999138445,pos,ns,-0.008785577,0.003193531,-2.751054529,0.006289726,neg,ns,2.201368291,-0.0000347,0.000109825,-0.316114194,0.752128568,neg,ns,0.858822344,Vldlr,Vldlr_Exon,19,27239925,27239974,27239925,27239926,50,+,CGTGGCTATCAAATGGATCTTGCTACTGGCGTGTGCAAGGCAGTAGGTAA,"Exon (Vldlr-204/Vldlr, exon 9 of 17)",19,27216484,27249755,33272,1,Vldlr-204,23441,Vldlr-204;Vldlr-208;Vldlr-202;Vldlr-207;Vldlr-201;Vldlr-206,Vldlr;Vldlr;Vldlr;Vldlr;Vldlr;Vldlr,0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,2,4,22359,ENSMUSG00000024924,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
25042,cg02809559,-0.00000261,0.0000029,-0.899179975,0.36925471,loss,ns,4.94E-09,0.00000493,0.00100205,0.999201124,pos,ns,-0.002094339,0.001445639,-1.448728981,0.148424016,neg,ns,0.828495822,0.00000239,0.0000497,0.047982115,0.961761394,pos,ns,0.936513957,Fgfr2,Fgfr2_Intron,7,131778491,131778540,131778491,131778492,50,+,CGGAGAATGAAATTAGTTTTCTGTGAGTGAAATGGCCTCTGAAAGAGCTC,"Intron (Fgfr2-217/Fgfr2, intron 2 of 6)",7,130162451,133123350,2960900,2,Fgfr2-217,1344810,Fgfr2-217,Fgfr2,0,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,58,79,14183,ENSMUSG00000030849,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
27108,cg16073238,0.00000432,0.00000811,0.532342672,0.594870018,gain,ns,-1.35E-08,0.0000138,-0.000981246,0.99921771,neg,ns,0.004068105,0.004035399,1.008104696,0.314190416,pos,ns,0.502807066,-0.000285097,0.000138777,-2.054352456,0.040779703,neg,ns,0.585113004,Lrrc7,Lrrc7_Exon,3,158175266,158175315,158175314,158175315,50,+,GGTGTGCAGCAATCGCCAGACAGTCTGGCAGGTTGGAGAGTAATCCCACG,"Exon (Lrrc7-206/Lrrc7, exon 15 of 25)",3,158082891,158353433,270543,2,Lrrc7-206,178118,Lrrc7-206;Lrrc7-205;Lrrc7-204;Lrrc7-207;Lrrc7-201,Lrrc7;Lrrc7;Lrrc7;Lrrc7;Lrrc7,0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,7,10,242274,ENSMUSG00000028176,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
3321,cg07071008,-0.000000965,0.0000121,-0.079663972,0.936555916,loss,ns,-0.00000002,0.0000206,-0.00097024,0.999226485,neg,ns,0.001191855,0.006029604,0.197667178,0.84343502,pos,ns,0.073948371,-0.000364072,0.000207358,-1.755770766,0.080115132,neg,ns,0.729387277,Gm11890,Gm11890_Intergenic_downstream,4,23602439,23602488,23602487,23602488,50,+,AAATAGGCAATAATCTGCATCCCCTAGTGCTGGATAGTGGATTGGCCACG,Distal Intergenic,4,23659928,23660344,417,2,Gm11890-201,57856,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,16,32,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
15920,cg21716973,0.00000479,0.00000347,1.378924757,0.168912064,gain,ns,-5.56E-09,0.0000059,-0.000942429,0.999248656,neg,ns,0.00003,0.001729368,0.017323627,0.986189581,pos,ns,0.00603959,0.0000509,0.0000595,0.856530805,0.392365849,pos,ns,0.942248792,Gm5452,Gm5452_Intron,13,83872239,83872288,83872287,83872288,50,-,ACGTCACATCGGATAACCCTGAAAAATTACCATGAATCTCCATAATTACG,"Intron (C130071C03Rik-204/C130071C03Rik-204, intron 3 of 3)",13,83832340,83833336,997,1,Gm5452-201,39948,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,12,16,432789,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
18785,cg18476018,0.0000222,0.00001,2.213412884,0.027597084,gain,ns,-1.51E-08,0.000017,-0.000884292,0.999295006,neg,ns,-0.002634367,0.004992536,-0.527661023,0.598112087,neg,ns,0.223217421,-0.0000348,0.000171693,-0.202412152,0.839727304,neg,ns,0.36741643,Gm5186,Gm5186_Intergenic_downstream,12,97360724,97360773,97360724,97360725,50,+,CGTAATTAAGTGTGGCAATCTGGTGATAAAACCTTTAAGTAATGACTCAT,Distal Intergenic,12,97564149,97565068,920,2,Gm5186-201,204295,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_downstream,2,2,382626,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
14840,cg08209532,0.0000343,0.0000088,3.894571006,0.00012052,gain,ns,1.15E-08,0.0000149,0.000768813,0.99938707,pos,ns,0.003561701,0.004377551,0.813628662,0.416482202,pos,ns,0.380403553,0.0000677,0.000150544,0.450029349,0.653003812,pos,ns,0.247121276,Sez6,Sez6_Intron,11,77948030,77948079,77948078,77948079,50,+,AGGCATCCTGAATGGCTCATTAGTGCCGATGAAAGCCTTTTTTCATTTCG,"Intron (Sez6-202/Sez6, intron 1 of 16)",11,77930800,77979048,48249,1,Sez6-202,17230,Sez6-202;Sez6-207;Sez6-205;Sez6-201;Sez6-209;Sez6-204,Sez6;Sez6;Sez6;Sez6;Sez6;Sez6,0;0;0;0;0;-3226,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,5,9,20370,ENSMUSG00000000632,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
21965,cg00312241,0.000000613,0.00000232,0.26459886,0.791494334,gain,ns,2.88E-09,0.00000394,0.000730713,0.999417446,pos,ns,-0.001021665,0.001153351,-0.885822976,0.376399543,neg,ns,0.424350912,0.00000819,0.0000397,0.206380552,0.83662914,pos,ns,0.932342003,Nme6,Nme6_threeUTR,9,109842463,109842512,109842511,109842512,50,+,TCAGCCAGCAGAGAGATTGCAGCCTTCTTCCCTGACTTCAGTGAACAGCG,3' UTR,9,109832749,109842529,9781,1,Nme6-211,9714,Camp-201;Nme6-211;Nme6-201;Nme6-205;Nme6-213;Nme6-212;Nme6-207;Nme6-210;Nme6-206;Nme6-214;Nme6-215;Nme6-208;Nme6-202;Nme6-203,Camp;Nme6;Nme6;Nme6;Nme6;Nme6;Nme6;Nme6;Nme6;Nme6;Nme6;Nme6;Nme6;Nme6,7105;0;0;0;9682;0;0;0;0;0;0;9272;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,1,1,54369,ENSMUSG00000032478,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,U10,Tr-S
6307,cg09233844,-0.0000031,0.00000143,-2.170317835,0.030741714,loss,ns,-1.73E-09,0.00000243,-0.000713705,0.999431005,neg,ns,-0.000262517,0.000711152,-0.369143758,0.712272579,neg,ns,0.147353775,-0.0000257,0.0000245,-1.048924816,0.295029788,neg,ns,0.010473085,Ywhaz,Ywhaz_fiveUTR,15,36793657,36793706,36793657,36793658,50,+,CGCACGATGACGTCAAACGCTGCTATGGCAACCGTTGATTGGTGCCCACA,Promoter (<=1kb),15,36770770,36794538,23769,2,Ywhaz-201,832,Ywhaz-201;Ywhaz-203;Ywhaz-204;Ywhaz-207;Ywhaz-208;Ywhaz-205;Ywhaz-206;Ywhaz-202;Ywhaz-209,Ywhaz;Ywhaz;Ywhaz;Ywhaz;Ywhaz;Ywhaz;Ywhaz;Ywhaz;Ywhaz,0;0;0;-138;0;-1243;-447;0;0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,TRUE,FALSE,FALSE,fiveUTR,1,1,22631,ENSMUSG00000022285,conserved gene and region,15,36793600,36794018,419,*,419,56,0.742243437,1.02373473,0.133651551,1.23E-50,CpGisland,TRUE,U1,Pr-A
4379,cg00236075,-0.000016,0.00000446,-3.583942666,0.000392943,loss,ns,-3.41E-09,0.00000757,-0.000450639,0.999640732,neg,ns,0.000322504,0.002217466,0.145438037,0.884459553,pos,ns,0.053322023,-0.000041,0.0000763,-0.537988139,0.590971262,neg,ns,0.926926007,Tnik,Tnik_threeUTR,3,28665788,28665837,28665788,28665789,50,-,CGGATAACTAAGGATGTGGTGCTCCAATGGGGAGAAATGCCCACGTCTGT,3' UTR,3,28263214,28670585,407372,1,Tnik-207,402574,Tnik-207;Tnik-201;Tnik-212;Tnik-203;Tnik-205;Tnik-202;Tnik-206;Tnik-211;Tnik-214;Tnik-215;Tnik-204;Tnik-216,Tnik;Tnik;Tnik;Tnik;Tnik;Tnik;Tnik;Tnik;Tnik;Tnik;Tnik;Tnik,0;0;0;0;0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,threeUTR,8,15,665113,ENSMUSG00000027692,conserved gene but different region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
17323,cg23683065,0.000055,0.00000908,6.057200255,4.01E-09,gain,yes,-4.76E-09,0.0000154,-0.000308615,0.99975396,neg,ns,-0.00320961,0.004520022,-0.710087207,0.478183864,neg,ns,0.320405083,0.000285146,0.000155443,1.834406252,0.06755199,pos,ns,0.71269942,Gm5356,Gm5356_Intergenic_upstream,8,89701965,89702014,89701965,89701966,50,+,CGCAGGGCTGCTATTGATTTTGAAACAATCTCGCACATGATAAATGAGAA,Distal Intergenic,8,89186946,89187560,615,2,Gm5356-201,-514405,NA,NA,NA,FALSE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,Intergenic_upstream,23,23,384862,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
10581,cg20761322,0.00000481,0.00000182,2.64339256,0.008625257,gain,ns,8.49E-10,0.00000309,0.000274833,0.999780892,pos,ns,0.002678414,0.000905443,2.958124375,0.003333327,pos,ns,2.477122019,-0.000133866,0.0000311,-4.299116284,0.000023,neg,ns,0.0371102,Cib2,Cib2_fiveUTR,9,54559977,54560026,54560025,54560026,50,-,GTCTAGCTGCTCTTCGGTGAAGATGGTCTGCTTGTTCCCCATGGTGGCCG,Promoter (<=1kb),9,54544794,54560218,15425,2,Cib2-201,192,Cib2-201,Cib2,0,TRUE,FALSE,TRUE,TRUE,FALSE,TRUE,FALSE,FALSE,FALSE,fiveUTR,1,1,56506,ENSMUSG00000037493,conserved gene and region,9,54560025,54560181,157,*,157,22,0.757961783,0.977362762,0.140127389,1.29E-20,CpGisland,TRUE,U4,Pr-F
9116,cg07853634,0.0000297,0.00000976,3.047340525,0.002507377,gain,ns,3.75E-09,0.0000166,0.000226012,0.999819814,pos,ns,0.00018587,0.004855995,0.038276448,0.969491906,pos,ns,0.013455813,0.0000632,0.000166997,0.378219476,0.70552642,pos,ns,0.831206935,Gm4791,Gm4791_Exon,9,46979037,46979086,46979085,46979086,50,-,ACACAATGGCAGGTTCCTTGACAATGTCATGCGTCTATTCAAAGCAACCG,"Exon (Gm47153-201/Gm47153-201, exon 1 of 2)",9,46998741,47003860,5120,1,Gm4791-201,-19704,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,FALSE,Exon,1,18,215467,ENSMUSG00000094893,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
12363,cg18772668,-0.0000021,0.000002,-1.052311659,0.293476142,loss,ns,5.62E-10,0.0000034,0.000165276,0.999868235,pos,ns,0.00150793,0.000995423,1.514862365,0.130826188,pos,ns,0.883305313,-0.0000578,0.0000342,-1.689820591,0.092067607,neg,ns,0.042164222,Smad6,Smad6_Promoter,9,64022082,64022131,64022082,64022083,50,+,CGCTGATTGTTGCGCAAACAAGGTTTCAAGTTTCTTAACTCTTAAAGGAG,Promoter (<=1kb),9,63953076,64022059,68984,2,Smad6-201,-23,Smad6-201;Smad6-203,Smad6;Smad6,0;0,FALSE,TRUE,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,Promoter,4,19,17130,ENSMUSG00000036867,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS
26648,cg01100740,-0.000000638,0.000000664,-0.961008168,0.337297026,loss,ns,-8.68E-11,0.00000113,-0.000077,0.999938606,neg,ns,0.000342313,0.000330274,1.036454043,0.300798163,pos,ns,0.52172482,-0.0000163,0.0000114,-1.438862101,0.151198473,neg,ns,0.98299735,Gm42647,Gm42647_Intron,3,149304011,149304060,149304059,149304060,50,+,GCTACCAATTAGCCCTCTAGTATTTCTGTAAGCCTTGAATTTTTGATGCG,"Intron (Gm30382-202/Gm30382-202, intron 3 of 3)",3,149210271,149210729,459,1,Gm42647-201,93740,NA,NA,NA,TRUE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,Intron,4,5,,NA,mapped to different genes,NA,,,,NA,,,,,,,NA,TRUE,U15,NS
26010,cg04118365,-0.0000019,0.00000853,-0.222908425,0.823753582,loss,ns,5.74E-10,0.0000145,0.0000396,0.999968449,pos,ns,-0.010308715,0.004246099,-2.427808585,0.015759389,neg,ns,1.802460617,0.00022626,0.000146023,1.549479375,0.122286788,pos,ns,0.785841174,C2cd5,C2cd5_Exon,6,143019377,143019426,143019425,143019426,50,+,CTCTATCCAGCTGCTGCATCTGTCTGCAAAGGAACTGTAATCAACTGACG,"Exon (C2cd5-207/C2cd5, exon 25 of 28)",6,143010920,143100107,89188,2,C2cd5-201,80681,C2cd5-201;C2cd5-203;C2cd5-217;C2cd5-202;C2cd5-213;C2cd5-204;C2cd5-207;C2cd5-216,C2cd5;C2cd5;C2cd5;C2cd5;C2cd5;C2cd5;C2cd5;C2cd5,0;0;0;0;0;0;0;0,TRUE,FALSE,FALSE,FALSE,FALSE,TRUE,TRUE,FALSE,FALSE,Exon,6,8,74741,ENSMUSG00000030279,conserved gene and region,NA,,,,NA,,,,,,,NA,TRUE,NA,NRS